BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|255764472|ref|YP_003064841.2| 2-methylthioadenine synthetase
(miaB-like) protein [Candidatus Liberibacter asiaticus str. psy62]
         (469 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done


Results from round 1


>gi|255764472|ref|YP_003064841.2| 2-methylthioadenine synthetase (miaB-like) protein [Candidatus
           Liberibacter asiaticus str. psy62]
 gi|254547823|gb|ACT56901.2| 2-methylthioadenine synthetase (miaB-like) protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 469

 Score =  962 bits (2488), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 469/469 (100%), Positives = 469/469 (100%)

Query: 1   MGLFIKLIGVAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD 60
           MGLFIKLIGVAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD
Sbjct: 1   MGLFIKLIGVAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD 60

Query: 61  DADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRR 120
           DADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRR
Sbjct: 61  DADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRR 120

Query: 121 SPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFL 180
           SPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFL
Sbjct: 121 SPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFL 180

Query: 181 TIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL 240
           TIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL
Sbjct: 181 TIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL 240

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300
           DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD
Sbjct: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
           RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA
Sbjct: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360

Query: 361 QAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
           QAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK
Sbjct: 361 QAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420

Query: 421 HGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
           HGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELVV
Sbjct: 421 HGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469


>gi|315122124|ref|YP_004062613.1| 2-methylthioadenine synthetase (miaB-like) protein [Candidatus
           Liberibacter solanacearum CLso-ZC1]
 gi|313495526|gb|ADR52125.1| 2-methylthioadenine synthetase (miaB-like) protein [Candidatus
           Liberibacter solanacearum CLso-ZC1]
          Length = 457

 Score =  808 bits (2088), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/457 (84%), Positives = 424/457 (92%)

Query: 13  MVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHI 72
           MV Q V+Q + PQ+FFVKSYGCQMNVYDSLR+ED+FFS+GYER +S+DDADLIVLNTCHI
Sbjct: 1   MVLQAVNQNLSPQKFFVKSYGCQMNVYDSLRIEDIFFSKGYERADSIDDADLIVLNTCHI 60

Query: 73  REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT 132
           REKAAEKVYS LGRIRNLKNSRIKEG + +VVVAGCVAQAEGEEILRRSPIVNVVVGPQT
Sbjct: 61  REKAAEKVYSSLGRIRNLKNSRIKEGRETIVVVAGCVAQAEGEEILRRSPIVNVVVGPQT 120

Query: 133 YYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTF 192
           YYRLPELLERARFGKRVVDTDYS EDKFERLSIVDGGY R+R V AFLTIQEGCDKFCTF
Sbjct: 121 YYRLPELLERARFGKRVVDTDYSAEDKFERLSIVDGGYKRRRSVAAFLTIQEGCDKFCTF 180

Query: 193 CVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLY 252
           CVVPYTRG EISRSLSQ+V+EARKL+ +GV EITLLGQNVNAW GKGL+G+KC FSDLLY
Sbjct: 181 CVVPYTRGAEISRSLSQIVEEARKLVASGVREITLLGQNVNAWCGKGLNGQKCNFSDLLY 240

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
           SL++IK L+RLRYTTSHPRDMSDCLIKAHG+LD+LMPYLHLPVQSGSDRILKSMNRRHT 
Sbjct: 241 SLADIKSLIRLRYTTSHPRDMSDCLIKAHGELDILMPYLHLPVQSGSDRILKSMNRRHTV 300

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
           YEY+QIIDRIRS+RP+IAISSDFIVGFPGE D DF  TM+LV+ IGYAQAFSFKYSPR G
Sbjct: 301 YEYQQIIDRIRSIRPNIAISSDFIVGFPGERDSDFEGTMNLVENIGYAQAFSFKYSPRPG 360

Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS 432
           TPG+NML QV+E+VK ERLLCLQKKLREQQVSFN+ C+GQI+EVLIEK GKE+G+LVGRS
Sbjct: 361 TPGANMLGQVEESVKTERLLCLQKKLREQQVSFNNDCIGQIVEVLIEKEGKERGQLVGRS 420

Query: 433 PWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
           PWLQSVVL+ ++HNIGD++KVRITDVK  TLYGE VV
Sbjct: 421 PWLQSVVLDGRDHNIGDVVKVRITDVKTITLYGEFVV 457


>gi|222084693|ref|YP_002543222.1| 2-methylthioadenine synthetase (miaB-like) protein [Agrobacterium
           radiobacter K84]
 gi|221722141|gb|ACM25297.1| 2-methylthioadenine synthetase (miaB-like) protein [Agrobacterium
           radiobacter K84]
          Length = 470

 Score =  612 bits (1577), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 285/444 (64%), Positives = 354/444 (79%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F+K+YGCQMNVYDS RM D     GYE    M++ADL++LNTCHIREKAAEKVYS L
Sbjct: 27  RKVFIKTYGCQMNVYDSTRMSDALARDGYEPTEDMEEADLVLLNTCHIREKAAEKVYSAL 86

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR+R++K  +  +G ++++ V GCVAQAEGEEILRR+P V+VV+GPQTY+RLP+ L RA+
Sbjct: 87  GRLRDMKKRKAADGREMMIGVTGCVAQAEGEEILRRAPAVDVVIGPQTYHRLPDALRRAK 146

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G+RVVDT+Y++EDKFE L   +    R RGVTAFLT+QEGCDKFCTFCVVPYTRG E+S
Sbjct: 147 EGQRVVDTEYALEDKFEHLPTPERSKIRARGVTAFLTVQEGCDKFCTFCVVPYTRGSEVS 206

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           RS++Q+V+EA KL+D GV EITLLGQNVNAW G G  GE  +  DLLY LSEI GL RLR
Sbjct: 207 RSVAQIVEEAEKLVDGGVREITLLGQNVNAWHGAGPKGEAWSLGDLLYRLSEIPGLARLR 266

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           YTTSHPRDM D LI AH DL  LMPYLHLPVQSGS+RILK+MNRRHTA EY  +I++IR+
Sbjct: 267 YTTSHPRDMDDRLISAHRDLRTLMPYLHLPVQSGSNRILKAMNRRHTAAEYFALIEKIRA 326

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
            RPDIA+S DFIVGFPGET+ DF  T+ LV+++ YAQAFSFKYS R GTPG+ + +QV E
Sbjct: 327 ARPDIALSGDFIVGFPGETEQDFADTLRLVEEVNYAQAFSFKYSTRPGTPGAELKDQVPE 386

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
            +KAERL  LQ  L +QQ +F DACVG++++VL+EK G+  G+L+GRSPWLQSV +++K 
Sbjct: 387 EIKAERLERLQALLLKQQHAFADACVGKVVDVLLEKPGRMPGQLIGRSPWLQSVNIDAKA 446

Query: 445 HNIGDIIKVRITDVKISTLYGELV 468
             IGDII VRIT    ++L+ EL+
Sbjct: 447 SQIGDIINVRITGTSTNSLFAELL 470


>gi|116250164|ref|YP_766002.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Rhizobium
           leguminosarum bv. viciae 3841]
 gi|123082073|sp|Q1MMB6|MIAB_RHIL3 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|115254812|emb|CAK05886.1| putative MiaB protein (methylthiolation of isopentenylated A37
           derivatives in rRNA) [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 473

 Score =  605 bits (1559), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 288/442 (65%), Positives = 353/442 (79%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F+K+YGCQMNVYDS+RM D     GYE    M+ ADL++LNTCHIREKAAEKVYS L
Sbjct: 26  RKVFIKTYGCQMNVYDSMRMSDALARDGYEPTEDMEVADLVLLNTCHIREKAAEKVYSAL 85

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR+R +K  +  +G ++++ VAGCVAQAEGEEILRR+P V+VV+GPQTY+RLPE L RA+
Sbjct: 86  GRLREMKKKKAADGREMMIGVAGCVAQAEGEEILRRAPAVDVVIGPQTYHRLPEALRRAK 145

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G+RVVDT+Y++EDKFE L I +    R RGVTAFLT+QEGCDKFCTFCVVPYTRG E+S
Sbjct: 146 QGQRVVDTEYAIEDKFEHLPIAESRRIRARGVTAFLTVQEGCDKFCTFCVVPYTRGSEVS 205

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           RS+SQ+V+EA KL D+GV EITLLGQNVNAW G G  GE  +  DLLY L+EI GL RLR
Sbjct: 206 RSVSQIVEEAEKLADSGVREITLLGQNVNAWHGAGSQGEAWSLGDLLYRLAEIPGLARLR 265

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           YTTSHPRDM D LI AH DL  LMPYLHLPVQSGSDRILK+MNRRHTA EY  +I+RIR+
Sbjct: 266 YTTSHPRDMDDRLINAHRDLSALMPYLHLPVQSGSDRILKAMNRRHTAAEYLALIERIRT 325

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           VRPDIA+S DFI GFPGETD+DF+ T+ LV+++ YAQAFSFKYS R GTPG+ + +QV E
Sbjct: 326 VRPDIALSGDFITGFPGETDEDFKDTLRLVEEVRYAQAFSFKYSTRPGTPGAELKDQVPE 385

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
            +KAERL  LQ  L +QQ  F ++CVG+ I++L+EK G+   +L+GRSPWLQSV +++K 
Sbjct: 386 EIKAERLERLQMLLLKQQQEFAESCVGKEIDLLLEKPGRMPEQLIGRSPWLQSVNVDAKA 445

Query: 445 HNIGDIIKVRITDVKISTLYGE 466
             IGDIIKVRIT    ++L+ E
Sbjct: 446 SQIGDIIKVRITGTGTNSLFAE 467


>gi|222147351|ref|YP_002548308.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Agrobacterium
           vitis S4]
 gi|221734341|gb|ACM35304.1| miaB protein [Agrobacterium vitis S4]
          Length = 477

 Score =  605 bits (1559), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 288/460 (62%), Positives = 359/460 (78%), Gaps = 4/460 (0%)

Query: 10  VAHMVSQIVDQCIVPQR-FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLN 68
           V H  +Q   Q   PQ+  F+K+YGCQMNVYDS RM D   ++GY+    M++A L++LN
Sbjct: 19  VEHASAQ---QKPAPQKKVFIKTYGCQMNVYDSSRMADALVAEGYQSTEDMEEASLVLLN 75

Query: 69  TCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVV 128
           TCHIREKAA+KVYS LGR+R +K  R   G + ++ VAGCVAQAEGEEI+RR P V+VVV
Sbjct: 76  TCHIREKAADKVYSALGRLREMKKIRAARGEEFMIGVAGCVAQAEGEEIVRREPGVDVVV 135

Query: 129 GPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
           GPQTY+RLP+ L RAR G+RVVDTDY+VEDKFE L        ++R +TAFLT+QEGCDK
Sbjct: 136 GPQTYHRLPQALRRARGGERVVDTDYAVEDKFEHLPDPTKIAGKRRMITAFLTVQEGCDK 195

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS 248
           FCTFCVVPYTRG E+SR L+Q++ EA++L+++GV EITLLGQNVNAW GKG DG +    
Sbjct: 196 FCTFCVVPYTRGSEVSRPLAQLLGEAQRLVESGVREITLLGQNVNAWHGKGPDGREMGLG 255

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
           DLLY L+EI GL RLRYTTSHPRDM + LI+AH DL +LMPYLHLPVQSGSDRILK+MNR
Sbjct: 256 DLLYKLAEIPGLARLRYTTSHPRDMDERLIEAHRDLRMLMPYLHLPVQSGSDRILKAMNR 315

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
           RH A +Y  ++DRIR  RPDIAIS DFIVGFPGETD DF  TM LV++IGYAQAFSFKYS
Sbjct: 316 RHKAADYIALVDRIREARPDIAISGDFIVGFPGETDADFEDTMKLVERIGYAQAFSFKYS 375

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL 428
           PR GTPG++M + V E+VK ERL  LQ+ L +QQ  F  + VGQ +++L+EK G+  G++
Sbjct: 376 PRPGTPGADMPDHVAEDVKTERLARLQELLLKQQHDFARSLVGQTMDLLLEKPGRMPGQI 435

Query: 429 VGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           +GRSPWLQSV +++K   IGDII+VRITD+  ++L+ E+ 
Sbjct: 436 IGRSPWLQSVNVDAKPSQIGDIIQVRITDIGPNSLFAEVA 475


>gi|159184272|ref|NP_353388.2| miaB protein [Agrobacterium tumefaciens str. C58]
 gi|229890693|sp|Q7D1M2|MIAB_AGRT5 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|159139599|gb|AAK86173.2| miaB protein [Agrobacterium tumefaciens str. C58]
          Length = 455

 Score =  604 bits (1557), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 284/444 (63%), Positives = 354/444 (79%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F+K+YGCQMNVYDS+RM D     GY +   M +ADL++LNTCHIREKAAEKVYS L
Sbjct: 10  RKVFIKTYGCQMNVYDSVRMSDALAKDGYVQTEDMGEADLVLLNTCHIREKAAEKVYSAL 69

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR+R++K SR ++G + ++ VAGCVAQAEGEEILRR+P V+VV+GPQTY+RLP+ L+R R
Sbjct: 70  GRLRDMKKSREEQGREFMIGVAGCVAQAEGEEILRRAPAVDVVIGPQTYHRLPDALKRVR 129

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G+RV++T+Y+VEDKFE L + +    R RGVTAFLT+QEGCDKFCTFCVVPYTRG E+S
Sbjct: 130 RGERVIETEYAVEDKFEHLPVAEKATLRSRGVTAFLTVQEGCDKFCTFCVVPYTRGSEVS 189

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R + Q+VDEA KL+D GV EITLLGQNVNAW+G+G  GEK   ++LLY L+EI GL RLR
Sbjct: 190 RPVRQIVDEAMKLVDAGVREITLLGQNVNAWQGEGPKGEKWGLAELLYRLAEIPGLARLR 249

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           YTTSHPRDM D LI AH DL +LMPYLHLPVQSGSDRILK+MNRRHT  EY Q+I++IRS
Sbjct: 250 YTTSHPRDMDDRLIGAHRDLRILMPYLHLPVQSGSDRILKAMNRRHTGEEYIQLIEKIRS 309

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
            RPDIA+S DFIVGFPGETD DF  TM +V+ + YAQAFSFKYS R GTPG+++ +QV E
Sbjct: 310 ARPDIAMSGDFIVGFPGETDRDFEDTMAMVETVKYAQAFSFKYSTRPGTPGADLTDQVAE 369

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
           +VKAERL  LQ  L  QQ  F ++ VG+ ++VL+EK G+   +L+GRSPWLQSV L++K 
Sbjct: 370 DVKAERLERLQALLLRQQKEFAESLVGKTMDVLLEKPGRMPEQLIGRSPWLQSVNLDAKT 429

Query: 445 HNIGDIIKVRITDVKISTLYGELV 468
             IGDI+ VRIT    ++L+ E+ 
Sbjct: 430 LKIGDIVNVRITATGPNSLFAEVA 453


>gi|325291790|ref|YP_004277654.1| miaB protein [Agrobacterium sp. H13-3]
 gi|325059643|gb|ADY63334.1| miaB protein [Agrobacterium sp. H13-3]
          Length = 467

 Score =  603 bits (1554), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 282/444 (63%), Positives = 354/444 (79%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F+K+YGCQMNVYDS+RM D     GY +   M +ADL++LNTCHIREKAAEKVYS L
Sbjct: 22  RKVFIKTYGCQMNVYDSVRMSDALAKDGYVQTEDMGEADLVLLNTCHIREKAAEKVYSAL 81

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR+R++K SR ++G + ++ VAGCVAQAEGEEILRR+P V+VV+GPQTY+RLP+ L+R R
Sbjct: 82  GRLRDMKKSREEQGREFVIGVAGCVAQAEGEEILRRAPAVDVVIGPQTYHRLPDALKRVR 141

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G+RV++T+Y+VEDKFE L + +    R RGVTAFLT+QEGCDKFCTFCVVPYTRG E+S
Sbjct: 142 GGERVIETEYAVEDKFEHLPVAEKATLRTRGVTAFLTVQEGCDKFCTFCVVPYTRGSEVS 201

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R + Q+VDEA KL+D GV EITLLGQNVNAW+G+G  GEK   ++LLY L+EI GL RLR
Sbjct: 202 RPVRQIVDEAMKLVDAGVREITLLGQNVNAWQGEGSKGEKWGLAELLYRLAEIPGLARLR 261

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           YTTSHPRDM D LI AH DL +LMPYLHLPVQSGSDRILK+MNRRHT  EY Q+I++IR+
Sbjct: 262 YTTSHPRDMDDRLIGAHRDLRILMPYLHLPVQSGSDRILKAMNRRHTGEEYIQLIEKIRA 321

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
            RPDIA+S DFIVGFPGETD DF  TM +++++ YAQAFSFKYS R GTPG+++ +QV E
Sbjct: 322 ARPDIAMSGDFIVGFPGETDRDFEDTMAIIEQVKYAQAFSFKYSTRPGTPGADLTDQVAE 381

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
            VKAERL  LQ  L  QQ  F ++ VG+ ++VL+EK G+   +L+GRSPWLQSV L++K 
Sbjct: 382 EVKAERLERLQALLLRQQKEFAESLVGKTMDVLLEKPGRMPEQLIGRSPWLQSVNLDAKT 441

Query: 445 HNIGDIIKVRITDVKISTLYGELV 468
             IGDI+ VRIT    ++L+ E+ 
Sbjct: 442 LKIGDIVNVRITATGPNSLFAEVA 465


>gi|241202785|ref|YP_002973881.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Rhizobium
           leguminosarum bv. trifolii WSM1325]
 gi|240856675|gb|ACS54342.1| RNA modification enzyme, MiaB family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 473

 Score =  602 bits (1552), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 285/442 (64%), Positives = 354/442 (80%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F+K+YGCQMNVYDS+RM D     GYE  + M++ADL++LNTCHIREKAAEKVYS L
Sbjct: 26  RKVFIKTYGCQMNVYDSMRMSDALARDGYEPTDDMEEADLVLLNTCHIREKAAEKVYSAL 85

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR+R++K  +  +G ++++ VAGCVAQAEGEEILRR+P V+VV+GPQTY+RLPE L  A+
Sbjct: 86  GRLRDMKKKKAADGREMMIGVAGCVAQAEGEEILRRAPAVDVVIGPQTYHRLPEALRLAK 145

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G+RVVDT+Y++EDKFE L I +    R RGVTAFLT+QEGCDKFCTFCVVPYTRG E+S
Sbjct: 146 QGQRVVDTEYAIEDKFEHLPIAESRRIRARGVTAFLTVQEGCDKFCTFCVVPYTRGSEVS 205

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R +SQ+V+EA KL D+GV EITLLGQNVNAW G G  GE  +  DLLY L+EI GL RLR
Sbjct: 206 RPVSQIVEEAEKLADSGVREITLLGQNVNAWHGAGPQGEAWSLGDLLYRLAEIPGLARLR 265

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           YTTSHPRDM D LI AH DL  LMPYLHLPVQSGSDRILK+MNRRHTA EY  +I+RIR+
Sbjct: 266 YTTSHPRDMDDRLINAHRDLSALMPYLHLPVQSGSDRILKAMNRRHTAAEYLTLIERIRT 325

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           VRPDIA+S DFI GFPGETD+DF+ T+ LV+++ YAQAFSFKYS R GTPG+ + +QV E
Sbjct: 326 VRPDIALSGDFITGFPGETDEDFKDTLRLVEEVRYAQAFSFKYSTRPGTPGAELKDQVPE 385

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
            +KAERL  LQ  L +QQ  F ++C+G+ I++L+EK G+   +L+GRSPWLQSV +++K 
Sbjct: 386 EIKAERLERLQMLLLKQQQEFAESCIGKEIDLLLEKPGRMPEQLIGRSPWLQSVNVDAKA 445

Query: 445 HNIGDIIKVRITDVKISTLYGE 466
             IGDIIKVRIT    ++L+ E
Sbjct: 446 SQIGDIIKVRITGTGTNSLFAE 467


>gi|327188593|gb|EGE55803.1| putative 2-methylthioadenine synthetase (miaB-like) protein
           [Rhizobium etli CNPAF512]
          Length = 482

 Score =  602 bits (1552), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 286/442 (64%), Positives = 352/442 (79%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F+K+YGCQMNVYDS RM D     GYE    M++ADL++LNTCHIREKAAEKVYS L
Sbjct: 35  RKVFIKTYGCQMNVYDSTRMSDALARDGYEPTEDMEEADLVLLNTCHIREKAAEKVYSAL 94

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR+R +K  +  +G ++++ V GCVAQAEGEEILRR+P V+VV+GPQTY+RLPE L RA+
Sbjct: 95  GRLREMKKKKAADGREMMIGVTGCVAQAEGEEILRRAPAVDVVIGPQTYHRLPEALRRAQ 154

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G+RVVDT+Y++EDKFE L I +    R RGVTAFLT+QEGCDKFCTFCVVPYTRG E+S
Sbjct: 155 QGQRVVDTEYAIEDKFEHLPIAESRKIRARGVTAFLTVQEGCDKFCTFCVVPYTRGSEVS 214

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R +SQ+V+EA KL++ GV EITLLGQNVNAW G G  GE  +  DLLY L+EI GL RLR
Sbjct: 215 RPVSQIVEEAEKLVEAGVREITLLGQNVNAWHGAGPRGEAWSLGDLLYRLAEIPGLARLR 274

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           YTTSHPRDM D LI+AH DL  LMPYLHLPVQSGSDRILK+MNRRHTA EY  +IDRIR+
Sbjct: 275 YTTSHPRDMDDRLIEAHRDLRALMPYLHLPVQSGSDRILKAMNRRHTAAEYLSLIDRIRT 334

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           VRPDIA+S DFI GFPGETD DF  T+ LV+++ YAQAFSFKYS R GTPG+ + +QV E
Sbjct: 335 VRPDIALSGDFITGFPGETDADFEDTLRLVEEVRYAQAFSFKYSTRPGTPGAELKDQVPE 394

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
            +KAERL  LQ  L +QQ  F ++C+G+ I++L+EK G+  G+L+GRSPWLQSV +++K+
Sbjct: 395 EIKAERLERLQALLLKQQQEFAESCIGKEIDLLLEKPGRMPGQLIGRSPWLQSVNVDAKS 454

Query: 445 HNIGDIIKVRITDVKISTLYGE 466
             IGDIIKVRIT    ++L+ E
Sbjct: 455 SQIGDIIKVRITGTGTNSLFAE 476


>gi|86356033|ref|YP_467925.1| putative 2-methylthioadenine synthetase (miaB-like) protein
           [Rhizobium etli CFN 42]
 gi|123724853|sp|Q2KD88|MIAB_RHIEC RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|86280135|gb|ABC89198.1| putative 2-methylthioadenine synthetase (miaB-like) protein
           [Rhizobium etli CFN 42]
          Length = 469

 Score =  601 bits (1550), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 285/442 (64%), Positives = 351/442 (79%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F+K+YGCQMNVYDS RM D     GYE    M++ADL++LNTCHIREKAAEKVYS L
Sbjct: 22  RKVFIKTYGCQMNVYDSTRMSDALARDGYEPTEDMEEADLVLLNTCHIREKAAEKVYSAL 81

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR+R +K  +  +G ++++ VAGCVAQAEGEEILRR+P V+VV+GPQTY+RLPE L RA+
Sbjct: 82  GRLREMKKKKAADGREMMIGVAGCVAQAEGEEILRRAPAVDVVIGPQTYHRLPEALRRAK 141

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G+RVVDT+Y++EDKFE L + +    R RGVTAFLT+QEGCDKFCTFCVVPYTRG E+S
Sbjct: 142 EGQRVVDTEYAIEDKFEHLPVAESRKIRARGVTAFLTVQEGCDKFCTFCVVPYTRGSEVS 201

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R +SQ+V+EA KL++ GV EITLLGQNVNAW G G  GE  +  DLLY L+EI GL RLR
Sbjct: 202 RPVSQIVEEAEKLVEGGVREITLLGQNVNAWHGAGPRGEAWSLGDLLYRLAEIPGLARLR 261

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           YTTSHPRDM D LI AH DL  LMPYLHLPVQSGSDRILK+MNRRHTA EY  +I+RIR+
Sbjct: 262 YTTSHPRDMDDRLIAAHRDLRALMPYLHLPVQSGSDRILKAMNRRHTAAEYLSLIERIRA 321

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           VRPDIA+S DFI GFPGETD DF  T+ LV+++ YAQAFSFKYS R GTPG+ + +QV E
Sbjct: 322 VRPDIALSGDFITGFPGETDKDFEDTLRLVEEVRYAQAFSFKYSTRPGTPGAELKDQVPE 381

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
            +KAERL  LQ  L +QQ  F ++C+G+ I++L+EK G+  G+L+GRSPWLQSV +++K 
Sbjct: 382 EIKAERLERLQALLLKQQQEFAESCIGKEIDLLLEKPGRMPGQLIGRSPWLQSVNVDAKA 441

Query: 445 HNIGDIIKVRITDVKISTLYGE 466
             IGDIIKVRIT    ++L+ E
Sbjct: 442 SQIGDIIKVRITGTGTNSLFAE 463


>gi|190890046|ref|YP_001976588.1| 2-methylthioadenine synthetase (miaB-like) protein [Rhizobium etli
           CIAT 652]
 gi|229890624|sp|B3PZB6|MIAB_RHIE6 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|190695325|gb|ACE89410.1| putative 2-methylthioadenine synthetase (miaB-like) protein
           [Rhizobium etli CIAT 652]
          Length = 469

 Score =  600 bits (1548), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 285/442 (64%), Positives = 351/442 (79%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F+K+YGCQMNVYDS RM D     GYE    M++ADL++LNTCHIREKAAEKVYS L
Sbjct: 22  RKVFIKTYGCQMNVYDSTRMSDALARDGYEPTEDMEEADLVLLNTCHIREKAAEKVYSAL 81

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR+R +K  +  +G ++++ V GCVAQAEGEEILRR+P V+VV+GPQTY+RLPE L RA+
Sbjct: 82  GRLREMKKKKAADGREMMIGVTGCVAQAEGEEILRRAPAVDVVIGPQTYHRLPEALRRAQ 141

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G+RVVDT+Y++EDKFE L I +    R RGVTAFLT+QEGCDKFCTFCVVPYTRG E+S
Sbjct: 142 QGQRVVDTEYAIEDKFEHLPIAESRKIRARGVTAFLTVQEGCDKFCTFCVVPYTRGSEVS 201

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R +SQ+V+EA KL++ GV EITLLGQNVNAW G G  GE  +  DLLY L+EI GL RLR
Sbjct: 202 RPVSQIVEEAEKLVEAGVREITLLGQNVNAWHGAGPRGEAWSLGDLLYRLAEIPGLARLR 261

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           YTTSHPRDM D LI+AH DL  LMPYLHLPVQSGSDRILK+MNRRHTA EY  +I+RIR+
Sbjct: 262 YTTSHPRDMDDRLIEAHRDLRALMPYLHLPVQSGSDRILKAMNRRHTAAEYLSLIERIRT 321

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           VRPDIA+S DFI GFPGETD DF  T+ LV+++ YAQAFSFKYS R GTPG+ + +QV E
Sbjct: 322 VRPDIALSGDFITGFPGETDADFEDTLRLVEEVRYAQAFSFKYSTRPGTPGAELKDQVPE 381

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
            +KAERL  LQ  L +QQ  F ++C+G+ I++L+EK G+  G+L+GRSPWLQSV +++K 
Sbjct: 382 EIKAERLERLQALLLKQQQEFAESCIGKEIDLLLEKPGRMPGQLIGRSPWLQSVNVDAKA 441

Query: 445 HNIGDIIKVRITDVKISTLYGE 466
             IGDIIKVRIT    ++L+ E
Sbjct: 442 SQIGDIIKVRITGTGTNSLFAE 463


>gi|218515353|ref|ZP_03512193.1| putative 2-methylthioadenine synthetase (miaB-like) protein
           [Rhizobium etli 8C-3]
          Length = 452

 Score =  599 bits (1545), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 285/442 (64%), Positives = 351/442 (79%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F+K+YGCQMNVYDS RM D     GYE    M++ADL++LNTCHIREKAAEKVYS L
Sbjct: 5   RKVFIKTYGCQMNVYDSTRMSDALARDGYEPTEDMEEADLVLLNTCHIREKAAEKVYSAL 64

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR+R +K  +  +G ++++ V GCVAQAEGEEILRR+P V+VV+GPQTY+RLPE L RA+
Sbjct: 65  GRLREMKKKKAADGREMMIGVTGCVAQAEGEEILRRAPAVDVVIGPQTYHRLPEALRRAQ 124

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G+RVVDT+Y++EDKFE L I +    R RGVTAFLT+QEGCDKFCTFCVVPYTRG E+S
Sbjct: 125 QGQRVVDTEYAIEDKFEHLPIAESRKIRARGVTAFLTVQEGCDKFCTFCVVPYTRGSEVS 184

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R +SQ+V+EA KL++ GV EITLLGQNVNAW G G  GE  +  DLLY L+EI GL RLR
Sbjct: 185 RPVSQIVEEAEKLVEAGVREITLLGQNVNAWHGAGPRGEAWSLGDLLYRLAEIPGLARLR 244

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           YTTSHPRDM D LI+AH DL  LMPYLHLPVQSGSDRILK+MNRRHTA EY  +I+RIR+
Sbjct: 245 YTTSHPRDMDDRLIEAHRDLRALMPYLHLPVQSGSDRILKAMNRRHTAAEYLSLIERIRT 304

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           VRPDIA+S DFI GFPGETD DF  T+ LV+++ YAQAFSFKYS R GTPG+ + +QV E
Sbjct: 305 VRPDIALSGDFITGFPGETDADFEDTLRLVEEVRYAQAFSFKYSTRPGTPGAELKDQVPE 364

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
            +KAERL  LQ  L +QQ  F ++C+G+ I++L+EK G+  G+L+GRSPWLQSV +++K 
Sbjct: 365 EIKAERLERLQALLLKQQQEFAESCIGKEIDLLLEKPGRMPGQLIGRSPWLQSVNVDAKA 424

Query: 445 HNIGDIIKVRITDVKISTLYGE 466
             IGDIIKVRIT    ++L+ E
Sbjct: 425 SQIGDIIKVRITGTGTNSLFAE 446


>gi|227820628|ref|YP_002824598.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Sinorhizobium
           fredii NGR234]
 gi|227339627|gb|ACP23845.1| putative tRNA-i(6)A37 modification enzyme MiaB [Sinorhizobium
           fredii NGR234]
          Length = 466

 Score =  597 bits (1540), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 282/450 (62%), Positives = 351/450 (78%)

Query: 19  DQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAE 78
           D+ +  ++ FVK+YGCQMNVYDS RM D     GY   + ++DAD ++LNTCHIREKAAE
Sbjct: 16  DEHVPARKVFVKTYGCQMNVYDSDRMSDALSRDGYVATDVLEDADFVLLNTCHIREKAAE 75

Query: 79  KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPE 138
           KVYS LGR+R LK ++  EG ++++ VAGCVAQAEG EILRR+P V++V+GPQTY+RLPE
Sbjct: 76  KVYSELGRLRELKKAKASEGREMVIGVAGCVAQAEGNEILRRAPAVDLVIGPQTYHRLPE 135

Query: 139 LLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
            L+RAR G+RVV+TDY++EDKFE L   D    R RGVTAFLT+QEGCDKFCTFCVVPYT
Sbjct: 136 ALKRARSGERVVETDYAIEDKFEHLPAPDKAKTRSRGVTAFLTVQEGCDKFCTFCVVPYT 195

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258
           RG E+SR ++Q++ EA KL+D GV EITLLGQNVNAW G G +G      DLL  L EI 
Sbjct: 196 RGAEVSRPVAQILAEAEKLVDGGVREITLLGQNVNAWHGAGPNGRDWGLGDLLRRLGEID 255

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           GL RLRYTTSHPRDM + LI+AH  +  LMPYLHLPVQSGSDRILK+MNRRHTA EY  +
Sbjct: 256 GLARLRYTTSHPRDMDESLIEAHRSMAKLMPYLHLPVQSGSDRILKAMNRRHTAAEYLAL 315

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           ++RIR+V+PD+A+S DFIVGFPGET+ DF  TM LV+ +GYAQAFSFKYS R GTPG+++
Sbjct: 316 VERIRAVQPDLALSGDFIVGFPGETEADFEETMRLVEVVGYAQAFSFKYSTRPGTPGADL 375

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSV 438
            +QV E+VKA+RL  LQ  L  QQ  F  ACVG+ I++L+EK G+  G+LVGRSPWLQ V
Sbjct: 376 KDQVPEDVKAKRLERLQSLLVNQQRDFAAACVGREIDLLLEKPGRMPGQLVGRSPWLQPV 435

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            +++K   IGDIIKVRIT    ++L+ E++
Sbjct: 436 NVDAKRSQIGDIIKVRITKAGSNSLFAEMI 465


>gi|150395268|ref|YP_001325735.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Sinorhizobium
           medicae WSM419]
 gi|229890663|sp|A6U5H0|MIAB_SINMW RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|150026783|gb|ABR58900.1| RNA modification enzyme, MiaB family [Sinorhizobium medicae WSM419]
          Length = 472

 Score =  596 bits (1537), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 282/447 (63%), Positives = 351/447 (78%), Gaps = 1/447 (0%)

Query: 23  VPQR-FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           VP R  FVK+YGCQMNVYDS RM D     GY   + +++AD ++LNTCHIREKAAEKVY
Sbjct: 19  VPARKVFVKTYGCQMNVYDSDRMSDALSRDGYVATDVLEEADFVLLNTCHIREKAAEKVY 78

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S LGR+R+LK ++ +EG ++L+ VAGCVAQAEG+EILRR+P V++V+GPQTY+RLPE L 
Sbjct: 79  SELGRLRDLKKAKAREGREMLIGVAGCVAQAEGKEILRRAPAVDLVIGPQTYHRLPEALR 138

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           RAR G+R+V+TDY++EDKF  L   D    R RGVTAFLT+QEGCDKFCTFCVVPYTRG 
Sbjct: 139 RARTGERIVETDYAIEDKFVHLPAPDKAKTRARGVTAFLTVQEGCDKFCTFCVVPYTRGS 198

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E+SR ++Q+V EA KL++ GV EITLLGQNVNAW G G  G +    DLL  L EI+GL 
Sbjct: 199 EVSRPVAQIVAEAEKLVEGGVREITLLGQNVNAWHGAGPHGREWGLGDLLRRLGEIEGLA 258

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           RLRYTTSHPRDM D LI+AH  +  LMPYLHLPVQSGSDRILK+MNRRHTA EY  ++ R
Sbjct: 259 RLRYTTSHPRDMDDSLIEAHRSMAKLMPYLHLPVQSGSDRILKAMNRRHTAAEYLALVAR 318

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           IR+V+PD+A+S DFIVGFPGETD+DF  T+ LVD + YAQAFSFKYS R GTPG+ + +Q
Sbjct: 319 IRAVQPDLALSGDFIVGFPGETDEDFEDTLRLVDAVNYAQAFSFKYSTRPGTPGAELEQQ 378

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           V E+VKA+RL  LQ  L +QQ  F +ACVG+ I++L+EK G+  G+LVGRSPWLQ V ++
Sbjct: 379 VPEDVKAKRLEILQALLIKQQRGFAEACVGREIDLLLEKPGRMPGQLVGRSPWLQPVNVD 438

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
           +K   IGDII+VRIT    ++L+ E++
Sbjct: 439 AKASQIGDIIRVRITKAGPNSLFAEMI 465


>gi|209547631|ref|YP_002279548.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Rhizobium
           leguminosarum bv. trifolii WSM2304]
 gi|229890625|sp|B5ZMY1|MIAB_RHILW RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|209533387|gb|ACI53322.1| RNA modification enzyme, MiaB family [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 469

 Score =  596 bits (1537), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 285/442 (64%), Positives = 350/442 (79%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F+K+YGCQMNVYDS RM D     GYE    M++ADL++LNTCHIREKAAEKVYS L
Sbjct: 22  RKVFIKTYGCQMNVYDSTRMSDALARDGYEPTEDMEEADLVLLNTCHIREKAAEKVYSAL 81

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR+R++K  +  +G ++++ VAGCVAQAEGEEILRR+P V+VV+GPQTY+RLPE L RA+
Sbjct: 82  GRLRDMKKKKAADGREMMIGVAGCVAQAEGEEILRRAPAVDVVIGPQTYHRLPEALRRAK 141

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G+RVVDTDY++EDKFE L I +    R RGVTAFLT+QEGCDKFCTFCVVPYTRG E+S
Sbjct: 142 EGQRVVDTDYAIEDKFEHLPIAESRKIRARGVTAFLTVQEGCDKFCTFCVVPYTRGSEVS 201

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R ++Q+V+EA KL++ GV EITLLGQNVNAW G G  GE  +  DLLY L+EI GL RLR
Sbjct: 202 RPVAQIVEEAEKLVEGGVREITLLGQNVNAWHGAGPRGEAWSLGDLLYRLAEIPGLARLR 261

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           YTTSHPRDM D LI AH DL  LMPYLHLPVQSGSDRILK+MNRRHTA EY  +I RIR+
Sbjct: 262 YTTSHPRDMDDRLIDAHRDLRALMPYLHLPVQSGSDRILKAMNRRHTAAEYLSLIARIRT 321

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           VRPDIA+S DFI GFPGETD DF  T+ LV+++ YAQAFSFKYS R GTPG+ + +QV E
Sbjct: 322 VRPDIALSGDFITGFPGETDADFEDTLRLVEEVRYAQAFSFKYSTRPGTPGAELKDQVPE 381

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
            +KAERL  LQ  L +QQ  F ++C+G+ I++L+EK G+   +L+GRSPWLQSV +++K 
Sbjct: 382 QIKAERLERLQALLLKQQQEFAESCIGKEIDLLLEKPGRMPEQLIGRSPWLQSVNVDAKA 441

Query: 445 HNIGDIIKVRITDVKISTLYGE 466
             IGDIIKVRIT    ++L+ E
Sbjct: 442 SQIGDIIKVRITGTGNNSLFAE 463


>gi|307301303|ref|ZP_07581065.1| RNA modification enzyme, MiaB family [Sinorhizobium meliloti
           BL225C]
 gi|307317974|ref|ZP_07597411.1| RNA modification enzyme, MiaB family [Sinorhizobium meliloti AK83]
 gi|306896376|gb|EFN27125.1| RNA modification enzyme, MiaB family [Sinorhizobium meliloti AK83]
 gi|306903759|gb|EFN34346.1| RNA modification enzyme, MiaB family [Sinorhizobium meliloti
           BL225C]
          Length = 472

 Score =  592 bits (1525), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 280/447 (62%), Positives = 350/447 (78%), Gaps = 1/447 (0%)

Query: 23  VPQR-FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           VP R  FVK+YGCQMNVYDS RM D     GY   + ++DAD ++LNTCHIREKAAEKVY
Sbjct: 19  VPARKVFVKTYGCQMNVYDSDRMSDALSRDGYVATDVLEDADFVLLNTCHIREKAAEKVY 78

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S LGR+R LK ++  EG ++L+ VAGCVAQAEG+EILRR P V++V+GPQTY+RLP+ L+
Sbjct: 79  SELGRLRELKKAKALEGREMLIGVAGCVAQAEGDEILRRVPAVDLVIGPQTYHRLPDALK 138

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           RAR G+R+V+T+Y++EDKF  L   D    R RGVTAFLT+QEGCDKFCTFCVVPYTRG 
Sbjct: 139 RARAGQRIVETEYAIEDKFVHLPAPDKAKTRARGVTAFLTVQEGCDKFCTFCVVPYTRGS 198

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E+SR ++Q+V EA KL++ GV EITLLGQNVNAW G+G  G + +  DLL  L EI GL 
Sbjct: 199 EVSRPVAQIVAEAEKLVEGGVREITLLGQNVNAWHGEGPHGREWSLGDLLRRLGEIDGLA 258

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           RLRYTTSHPRDM D LI+AH  +  LMPYLHLPVQSGSDRILK+MNRRHTA EY  +++R
Sbjct: 259 RLRYTTSHPRDMDDSLIEAHRSMAKLMPYLHLPVQSGSDRILKAMNRRHTAAEYLALVER 318

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           IR+ +PD+A+S DFIVGFPGETD DF  T+ LV+++ YAQAFSFKYS R GTPG+ + EQ
Sbjct: 319 IRAAQPDLALSGDFIVGFPGETDQDFEDTLRLVEEVNYAQAFSFKYSTRPGTPGAELKEQ 378

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           V E+VKA+RL  LQ  L +QQ  F +ACVG+ I++L+EK G+  G+LVGRSPWLQ V ++
Sbjct: 379 VPEDVKAKRLEILQALLVKQQRGFAEACVGREIDLLLEKPGRMPGQLVGRSPWLQPVNVD 438

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
           +K   IGDII+VRIT    ++L+ E++
Sbjct: 439 AKASQIGDIIRVRITKAGPNSLFAEMI 465


>gi|15964158|ref|NP_384511.1| hypothetical protein SMc01115 [Sinorhizobium meliloti 1021]
 gi|81635228|sp|Q92SI7|MIAB_RHIME RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|15073334|emb|CAC41842.1| Probable tRNA-i(6)A37 modification enzyme, 2-methylthioadenine
           synthetase [Sinorhizobium meliloti 1021]
          Length = 472

 Score =  591 bits (1524), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 280/447 (62%), Positives = 350/447 (78%), Gaps = 1/447 (0%)

Query: 23  VPQR-FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           VP R  FVK+YGCQMNVYDS RM D     GY   + ++DAD ++LNTCHIREKAAEKVY
Sbjct: 19  VPARKVFVKTYGCQMNVYDSDRMSDALSRDGYVATDVLEDADFVLLNTCHIREKAAEKVY 78

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S LGR+R LK ++  EG ++L+ VAGCVAQAEG+EILRR P V++V+GPQTY+RLP+ L+
Sbjct: 79  SELGRLRELKKAKALEGREMLIGVAGCVAQAEGDEILRRVPAVDLVIGPQTYHRLPDALK 138

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           RAR G+R+V+T+Y++EDKF  L   D    R RGVTAFLT+QEGCDKFCTFCVVPYTRG 
Sbjct: 139 RARAGQRIVETEYAIEDKFVHLPAPDKAKTRARGVTAFLTVQEGCDKFCTFCVVPYTRGS 198

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E+SR ++Q+V EA KL++ GV EITLLGQNVNAW G+G  G + +  DLL  L EI GL 
Sbjct: 199 EVSRPVAQIVAEAEKLVEGGVREITLLGQNVNAWHGEGPHGREWSLGDLLRRLGEIDGLA 258

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           RLRYTTSHPRDM D LI+AH  +  LMPYLHLPVQSGSDRILK+MNRRHTA EY  +++R
Sbjct: 259 RLRYTTSHPRDMDDSLIEAHRSMAKLMPYLHLPVQSGSDRILKAMNRRHTAAEYLALVER 318

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           IR+ +PD+A+S DFIVGFPGETD DF  T+ LV+++ YAQAFSFKYS R GTPG+ + EQ
Sbjct: 319 IRAAQPDLALSGDFIVGFPGETDQDFEDTLRLVEEVNYAQAFSFKYSTRPGTPGAELKEQ 378

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           V E+VKA+RL  LQ  L +QQ  F +ACVG+ I++L+EK G+  G+LVGRSPWLQ V ++
Sbjct: 379 VPEDVKAKRLEILQALLVKQQRGFAEACVGREIDLLLEKPGRMPGQLVGRSPWLQPVNVD 438

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
           +K   IGDII+VRIT    ++L+ E++
Sbjct: 439 AKASQIGDIIRVRITKAGPNSLFAEMI 465


>gi|319779782|ref|YP_004139258.1| RNA modification enzyme, MiaB family [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317165670|gb|ADV09208.1| RNA modification enzyme, MiaB family [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 469

 Score =  582 bits (1501), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 275/444 (61%), Positives = 342/444 (77%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F+K+YGCQMNVYDS RM D   + GY   +++ +ADL++LNTCHIREKAAEKVYS L
Sbjct: 26  RKVFIKTYGCQMNVYDSQRMADALAADGYSATDAIGEADLVLLNTCHIREKAAEKVYSEL 85

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GRIR++K  R   G ++LV VAGCVAQAEG EI+RRSP V++V+GPQTY+RLP++L R R
Sbjct: 86  GRIRDMKAERALAGREMLVGVAGCVAQAEGAEIIRRSPAVDLVIGPQTYHRLPDVLARVR 145

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G+++V+TDY++EDKFE L         KRGVTAFLT+QEGCDKFCTFCVVPYTRG E+S
Sbjct: 146 GGEKIVETDYAIEDKFEHLPQPKRAEVIKRGVTAFLTVQEGCDKFCTFCVVPYTRGSEVS 205

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R ++Q+V EA +L + GV E+TLLGQNVNAW G+G +G +     LL+ L+EI GL RLR
Sbjct: 206 RPVAQIVAEAERLAEAGVREVTLLGQNVNAWHGQGENGHEWGLGRLLFRLAEIPGLARLR 265

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           YTTSHPRDM D LI AH DL  LMPYLHLPVQSGSDRILK+MNRRHTA +Y  ++DRIR+
Sbjct: 266 YTTSHPRDMDDELIAAHRDLPSLMPYLHLPVQSGSDRILKAMNRRHTARDYLALLDRIRT 325

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
            RPDIA+S DFIVGFPGET+ DF ATM+LV ++ YA AFSFKYSPR GTPG+ M + V E
Sbjct: 326 ARPDIALSGDFIVGFPGETEADFEATMELVRQVNYASAFSFKYSPRPGTPGAEMADHVPE 385

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
            VK ERL  LQ  L +QQ  F  + +G  I+ LIEK G++ G+ VGRSPWLQ V+++ K 
Sbjct: 386 TVKDERLQRLQALLVKQQQDFGLSLIGSTIDTLIEKPGRQTGQKVGRSPWLQPVIVDEKA 445

Query: 445 HNIGDIIKVRITDVKISTLYGELV 468
             IGDII+VRIT    ++L+ EL 
Sbjct: 446 GEIGDIIQVRITKTGYNSLFAELA 469


>gi|163844167|ref|YP_001628572.1| RNA modification protein [Brucella suis ATCC 23445]
 gi|229890454|sp|B0CK00|MIAB_BRUSI RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|163674890|gb|ABY39001.1| RNA modification enzyme, MiaB family [Brucella suis ATCC 23445]
          Length = 467

 Score =  581 bits (1497), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 270/442 (61%), Positives = 345/442 (78%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ FVK+YGCQMNVYDS RM D   ++GY   ++ DDADL++LNTCHIREKA+EK+YS L
Sbjct: 23  RKVFVKTYGCQMNVYDSQRMADSLAAEGYVATDTPDDADLVLLNTCHIREKASEKLYSAL 82

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR+R +K++R  +G +L + VAGCVAQAEG+EILRR+P V++V+GPQTY+RLP  L R R
Sbjct: 83  GRLRKMKDARAADGKELTIGVAGCVAQAEGQEILRRAPNVDLVIGPQTYHRLPNALARVR 142

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G++VV+TDY++EDKFE L        RKRGV+AFLT+QEGCDKFCTFCVVPYTRG E+S
Sbjct: 143 GGEKVVETDYAIEDKFEHLPAPRREETRKRGVSAFLTVQEGCDKFCTFCVVPYTRGSEVS 202

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           RS+ Q+V EA +L D+GV E+TLLGQNVNAW G+G DG +    +LL+ L+ I G+ RLR
Sbjct: 203 RSVKQIVAEAERLADSGVRELTLLGQNVNAWHGEGEDGREWGLGELLFRLARIPGIARLR 262

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           YTTSHPRDM D LI AH DL  LMPYLHLPVQSGSDRILK+MNRRH A EY ++I+RIR+
Sbjct: 263 YTTSHPRDMDDSLIAAHRDLRQLMPYLHLPVQSGSDRILKAMNRRHKADEYLRLIERIRN 322

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           VRPD+A+S DFIVGFPGETD DF  TM LV  + YAQA+SFKYSPRLGTPG+++ + V+E
Sbjct: 323 VRPDMALSGDFIVGFPGETDQDFEDTMQLVRDVNYAQAYSFKYSPRLGTPGADLDDHVEE 382

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
            VK ERL  LQ  L  QQ +F D+ +G+ ++VL+EK G+E G++VGRSPWL  V+++   
Sbjct: 383 AVKDERLQRLQALLSAQQYAFQDSMIGRKMDVLLEKPGREAGQMVGRSPWLLPVIIDDNK 442

Query: 445 HNIGDIIKVRITDVKISTLYGE 466
             +GDII V+I     ++L  +
Sbjct: 443 DRVGDIIHVKIVSTGTNSLIAQ 464


>gi|163757739|ref|ZP_02164828.1| RNA modification enzyme, MiaB family protein [Hoeflea phototrophica
           DFL-43]
 gi|162285241|gb|EDQ35523.1| RNA modification enzyme, MiaB family protein [Hoeflea phototrophica
           DFL-43]
          Length = 480

 Score =  580 bits (1495), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 274/455 (60%), Positives = 342/455 (75%)

Query: 14  VSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIR 73
             Q  D     ++ FVK+YGCQMNVYDS RM D     GY+ V+S++ ADL+++NTCHIR
Sbjct: 12  AGQPADAGTATKKVFVKTYGCQMNVYDSERMGDALSRDGYQPVDSVEAADLVLINTCHIR 71

Query: 74  EKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTY 133
           EKAAEKVYS LGR+  LK  R  EGGDL+V VAGCVAQAEGEE++RR+P+V+VV+GPQTY
Sbjct: 72  EKAAEKVYSQLGRLAQLKKRRNSEGGDLMVAVAGCVAQAEGEEMIRRAPVVDVVIGPQTY 131

Query: 134 YRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC 193
           +RLP  L +AR G+RVV+T++  EDKF+RL     G  R RGVTAFLT+QEGCDKFCTFC
Sbjct: 132 HRLPGALAKARNGERVVETEFPTEDKFDRLPDASAGTIRTRGVTAFLTVQEGCDKFCTFC 191

Query: 194 VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS 253
           VVPYTRG E+SR + +++ EA +L   GV E+TLLGQNVNAW G+G DG +    +L++ 
Sbjct: 192 VVPYTRGAEVSRPVERIMSEAERLAAAGVREVTLLGQNVNAWHGQGSDGREWGLGELVHR 251

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
           L+ I+G+ R+RYTTSHPRDM D LI AH DL  LMPYLHLPVQSGSDRILK+MNRRHTA 
Sbjct: 252 LAAIEGIDRIRYTTSHPRDMDDALINAHRDLPELMPYLHLPVQSGSDRILKAMNRRHTAA 311

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
           EY ++++RIR  RPDIA+S DFIVGFPGETD+DF  TM L+ ++ YA AFSFKYS R GT
Sbjct: 312 EYIRLVERIRMARPDIALSGDFIVGFPGETDEDFEDTMRLIREVNYAAAFSFKYSIRPGT 371

Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSP 433
           PG+ M  QVDE VK+ERL  LQ  + EQ   F   CVG+  ++L+EK G+   +LVGRSP
Sbjct: 372 PGAGMDGQVDEAVKSERLTRLQALINEQTRDFGRQCVGKTADLLLEKPGRNTDQLVGRSP 431

Query: 434 WLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           WLQ V++++K   IGDI+ +RI     + LY E V
Sbjct: 432 WLQPVIVDAKAGKIGDIVNMRIMQTGSNGLYAEPV 466


>gi|23503001|ref|NP_699128.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Brucella suis
           1330]
 gi|161620062|ref|YP_001593949.1| RNA modification protein [Brucella canis ATCC 23365]
 gi|225626520|ref|ZP_03784559.1| RNA modification enzyme, MiaB family protein [Brucella ceti str.
           Cudo]
 gi|254705152|ref|ZP_05166980.1| RNA modification protein [Brucella suis bv. 3 str. 686]
 gi|254707331|ref|ZP_05169159.1| RNA modification protein [Brucella pinnipedialis M163/99/10]
 gi|254709128|ref|ZP_05170939.1| RNA modification protein [Brucella pinnipedialis B2/94]
 gi|254713447|ref|ZP_05175258.1| RNA modification protein [Brucella ceti M644/93/1]
 gi|254716197|ref|ZP_05178008.1| RNA modification protein [Brucella ceti M13/05/1]
 gi|256030653|ref|ZP_05444267.1| RNA modification protein [Brucella pinnipedialis M292/94/1]
 gi|256158655|ref|ZP_05456538.1| RNA modification protein [Brucella ceti M490/95/1]
 gi|256254059|ref|ZP_05459595.1| RNA modification protein [Brucella ceti B1/94]
 gi|260169557|ref|ZP_05756368.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Brucella sp.
           F5/99]
 gi|260567379|ref|ZP_05837849.1| RNA modification protein [Brucella suis bv. 4 str. 40]
 gi|261217971|ref|ZP_05932252.1| RNA modification protein [Brucella ceti M13/05/1]
 gi|261221200|ref|ZP_05935481.1| RNA modification protein [Brucella ceti B1/94]
 gi|261314813|ref|ZP_05954010.1| RNA modification protein [Brucella pinnipedialis M163/99/10]
 gi|261316628|ref|ZP_05955825.1| RNA modification protein [Brucella pinnipedialis B2/94]
 gi|261321179|ref|ZP_05960376.1| RNA modification protein [Brucella ceti M644/93/1]
 gi|261755857|ref|ZP_05999566.1| RNA modification protein [Brucella suis bv. 3 str. 686]
 gi|261759085|ref|ZP_06002794.1| RNA modification protein [Brucella sp. F5/99]
 gi|265987700|ref|ZP_06100257.1| RNA modification protein [Brucella pinnipedialis M292/94/1]
 gi|265997161|ref|ZP_06109718.1| RNA modification protein [Brucella ceti M490/95/1]
 gi|294851378|ref|ZP_06792051.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Brucella sp. NVSL
           07-0026]
 gi|81751814|sp|Q8FXU4|MIAB_BRUSU RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|229890452|sp|A9M9Y3|MIAB_BRUC2 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|23349040|gb|AAN31043.1| conserved hypothetical protein [Brucella suis 1330]
 gi|161336873|gb|ABX63178.1| RNA modification enzyme, MiaB family [Brucella canis ATCC 23365]
 gi|225618177|gb|EEH15220.1| RNA modification enzyme, MiaB family protein [Brucella ceti str.
           Cudo]
 gi|260156897|gb|EEW91977.1| RNA modification protein [Brucella suis bv. 4 str. 40]
 gi|260919784|gb|EEX86437.1| RNA modification protein [Brucella ceti B1/94]
 gi|260923060|gb|EEX89628.1| RNA modification protein [Brucella ceti M13/05/1]
 gi|261293869|gb|EEX97365.1| RNA modification protein [Brucella ceti M644/93/1]
 gi|261295851|gb|EEX99347.1| RNA modification protein [Brucella pinnipedialis B2/94]
 gi|261303839|gb|EEY07336.1| RNA modification protein [Brucella pinnipedialis M163/99/10]
 gi|261739069|gb|EEY27065.1| RNA modification protein [Brucella sp. F5/99]
 gi|261745610|gb|EEY33536.1| RNA modification protein [Brucella suis bv. 3 str. 686]
 gi|262551629|gb|EEZ07619.1| RNA modification protein [Brucella ceti M490/95/1]
 gi|264659897|gb|EEZ30158.1| RNA modification protein [Brucella pinnipedialis M292/94/1]
 gi|294819967|gb|EFG36966.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Brucella sp. NVSL
           07-0026]
          Length = 467

 Score =  578 bits (1490), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 269/442 (60%), Positives = 344/442 (77%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ FVK+YGCQMNVYDS RM D   ++GY   ++ DDADL++LNTCHIREKA+EK+YS L
Sbjct: 23  RKVFVKTYGCQMNVYDSQRMADSLAAEGYVATDTPDDADLVLLNTCHIREKASEKLYSAL 82

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR+R +K++R  +G +L + VAGCVAQAEG+EILRR+P V++V+GPQTY+RLP  L R R
Sbjct: 83  GRLRKMKDARAADGKELTIGVAGCVAQAEGQEILRRAPNVDLVIGPQTYHRLPNALARVR 142

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G++VV+TDY++EDKFE L        RKRGV+AFLT+QEGCDKFCTFCVVPYTRG E+S
Sbjct: 143 GGEKVVETDYAIEDKFEHLPAPRREETRKRGVSAFLTVQEGCDKFCTFCVVPYTRGSEVS 202

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           RS+ Q+V EA +L D+GV E+TLLGQNVNAW G+G DG +    +LL+ L+ I G+ RLR
Sbjct: 203 RSVKQIVAEAERLADSGVRELTLLGQNVNAWHGEGEDGREWGLGELLFRLARIPGIARLR 262

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           YTTSHPRDM D LI AH DL  LMPYLHLPVQSGSDRILK+MNRRH A EY ++I+RIR+
Sbjct: 263 YTTSHPRDMDDSLIAAHRDLRQLMPYLHLPVQSGSDRILKAMNRRHKADEYLRLIERIRN 322

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           VRPD+A+S DFIVGFPGETD DF  TM LV  + YAQA+SFKYSPR GTPG+++ + V+E
Sbjct: 323 VRPDMALSGDFIVGFPGETDQDFEDTMQLVRDVNYAQAYSFKYSPRPGTPGADLDDHVEE 382

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
            VK ERL  LQ  L  QQ +F D+ +G+ ++VL+EK G+E G++VGRSPWL  V+++   
Sbjct: 383 AVKDERLQRLQALLSAQQYAFQDSMIGRKMDVLLEKPGREAGQMVGRSPWLLPVIIDDNK 442

Query: 445 HNIGDIIKVRITDVKISTLYGE 466
             +GDII V+I     ++L  +
Sbjct: 443 DRVGDIIHVKIVSTGTNSLIAQ 464


>gi|254700783|ref|ZP_05162611.1| RNA modification protein [Brucella suis bv. 5 str. 513]
 gi|261751292|ref|ZP_05995001.1| RNA modification protein [Brucella suis bv. 5 str. 513]
 gi|261741045|gb|EEY28971.1| RNA modification protein [Brucella suis bv. 5 str. 513]
          Length = 467

 Score =  578 bits (1490), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 269/442 (60%), Positives = 344/442 (77%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ FVK+YGCQMNVYDS RM D   ++GY   ++ DDADL++LNTCHIREKA+EK+YS L
Sbjct: 23  RKVFVKTYGCQMNVYDSQRMADSLAAEGYVATDTPDDADLVLLNTCHIREKASEKLYSAL 82

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR+R +K++R  +G +L + VAGCVAQAEG+EILRR+P V++V+GPQTY+RLP  L R R
Sbjct: 83  GRLRKMKDARAADGKELTIGVAGCVAQAEGQEILRRAPNVDLVIGPQTYHRLPNALARVR 142

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G++VV+TDY++EDKFE L        RKRGV+AFLT+QEGCDKFCTFCVVPYTRG E+S
Sbjct: 143 GGEKVVETDYAIEDKFEHLPAPRREETRKRGVSAFLTVQEGCDKFCTFCVVPYTRGSEVS 202

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           RS+ Q+V EA +L D+GV E+TLLGQNVNAW G+G DG +    +LL+ L+ I G+ RLR
Sbjct: 203 RSVKQIVAEAERLADSGVRELTLLGQNVNAWHGEGEDGREWGLGELLFRLARIPGIARLR 262

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           YTTSHPRDM D LI AH DL  LMPYLHLPVQSGSDRILK+MNRRH A EY ++I+RIR+
Sbjct: 263 YTTSHPRDMDDSLIAAHRDLRQLMPYLHLPVQSGSDRILKAMNRRHKADEYLRLIERIRN 322

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           VRPD+A+S DFIVGFPGETD DF  TM LV  + YAQA+SFKYSPR GTPG+++ + V+E
Sbjct: 323 VRPDMALSGDFIVGFPGETDQDFEDTMQLVRDVNYAQAYSFKYSPRPGTPGADLDDHVEE 382

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
            VK ERL  LQ  L  QQ +F D+ +G+ ++VL+EK G+E G++VGRSPWL  V+++   
Sbjct: 383 AVKDERLQRLQALLSAQQYAFQDSMIGRKMDVLLEKPGREAGQMVGRSPWLLPVIIDDNK 442

Query: 445 HNIGDIIKVRITDVKISTLYGE 466
             +GDII V+I     ++L  +
Sbjct: 443 DRVGDIIHVKIVSTGTNSLIAQ 464


>gi|110636243|ref|YP_676451.1| RNA modification protein [Mesorhizobium sp. BNC1]
 gi|122965426|sp|Q11BD9|MIAB_MESSB RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|110287227|gb|ABG65286.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Chelativorans sp. BNC1]
          Length = 475

 Score =  578 bits (1489), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 274/442 (61%), Positives = 345/442 (78%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ FVK+YGCQMNVYDS RM D   ++GY   + ++DADL++LNTCHIREKAAEKVYS L
Sbjct: 25  KKVFVKTYGCQMNVYDSQRMADALAAEGYRATDVIEDADLVLLNTCHIREKAAEKVYSEL 84

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GRIR LK  R K+G + +V VAGCVAQAEG EILRR+P V++V+GPQTY+RLP ++ RAR
Sbjct: 85  GRIRVLKEERAKQGRETVVGVAGCVAQAEGREILRRAPAVDLVIGPQTYHRLPSVVTRAR 144

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G+++V+T+Y+VEDKF+ L   +    R RGVTAFLT+QEGCDKFCTFCVVPYTRG E+S
Sbjct: 145 AGEKIVETEYAVEDKFDHLPAPERTAVRSRGVTAFLTVQEGCDKFCTFCVVPYTRGAEVS 204

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R ++Q+V EA +L + GV E+TLLGQNVNAW G+G DG +     LL+ L+EI GL RLR
Sbjct: 205 RPVAQIVAEAERLAEAGVRELTLLGQNVNAWHGEGPDGREWGLGRLLFRLAEIPGLDRLR 264

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           YTTSHPRDM + LI AH DL  LMPYLHLPVQ+GSDRILK+MNR+HTA +Y ++I+RIR+
Sbjct: 265 YTTSHPRDMDEELIAAHRDLIKLMPYLHLPVQAGSDRILKAMNRKHTAADYLRLIERIRA 324

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
            RPDIA+S DFIVGFPGETD DF  TM +V  + YAQAFSFKYSPR GTPG++M +QV +
Sbjct: 325 ARPDIAMSGDFIVGFPGETDRDFEDTMRIVRDVNYAQAFSFKYSPRPGTPGADMHDQVPD 384

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
            VK ERL  LQ  L EQQ +F ++ VG  I++L+EK G++ G+LVGRSPWLQ V++    
Sbjct: 385 AVKDERLQRLQALLAEQQRAFGESLVGTEIDLLLEKPGRQAGQLVGRSPWLQPVIVEENA 444

Query: 445 HNIGDIIKVRITDVKISTLYGE 466
             IGDI++VRIT     +L+ E
Sbjct: 445 GQIGDIVRVRITSSGGHSLFCE 466


>gi|306843571|ref|ZP_07476172.1| RNA modification enzyme, MiaB family [Brucella sp. BO1]
 gi|306276262|gb|EFM57962.1| RNA modification enzyme, MiaB family [Brucella sp. BO1]
          Length = 467

 Score =  577 bits (1488), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 269/442 (60%), Positives = 344/442 (77%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ FVK+YGCQMNVYDS RM D   ++GY   ++ DDADL++LNTCHIREKA+EK+YS L
Sbjct: 23  RKVFVKTYGCQMNVYDSQRMADSLAAEGYVATDTPDDADLVLLNTCHIREKASEKLYSAL 82

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR+R +K++R  +G +L + VAGCVAQAEG+EILRR+P V++V+GPQTY+RLP  L R R
Sbjct: 83  GRLRKMKDARAADGKELTIGVAGCVAQAEGQEILRRAPNVDLVIGPQTYHRLPNALARVR 142

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G++VV+TDY++EDKFE L        RKRGV+AFLT+QEGCDKFCTFCVVPYTRG E+S
Sbjct: 143 GGEKVVETDYAIEDKFEHLPAPRREETRKRGVSAFLTVQEGCDKFCTFCVVPYTRGSEVS 202

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           RS+ Q+V EA +L D+GV E+TLLGQNVNAW G+G DG +    +LL+ L+ I G+ RLR
Sbjct: 203 RSVKQIVAEAERLADSGVRELTLLGQNVNAWHGEGEDGREWGLGELLFRLARIPGIARLR 262

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           YTTSHPRDM D LI AH DL  LMPYLHLPVQSGSDRILK+MNRRH A EY ++I+RIR 
Sbjct: 263 YTTSHPRDMDDSLIAAHRDLRQLMPYLHLPVQSGSDRILKAMNRRHKADEYLRLIERIRD 322

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           VRPD+A+S DFIVGFPGETD DF  TM LV ++ YAQA+SFKYSPR GTPG+++ + V+E
Sbjct: 323 VRPDMALSGDFIVGFPGETDQDFEDTMRLVREVNYAQAYSFKYSPRPGTPGADLDDHVEE 382

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
            VK ERL  LQ  L  QQ +F D+ +G+ ++VL+EK G+E G++VGRSPWL  V+++   
Sbjct: 383 AVKDERLQRLQALLSAQQYAFQDSMIGRKMDVLLEKPGREAGQMVGRSPWLLPVIIDDNK 442

Query: 445 HNIGDIIKVRITDVKISTLYGE 466
             +GDII V+I     ++L  +
Sbjct: 443 DRVGDIIHVKIVSTGTNSLIAQ 464


>gi|306842738|ref|ZP_07475380.1| RNA modification enzyme, MiaB family [Brucella sp. BO2]
 gi|306287082|gb|EFM58587.1| RNA modification enzyme, MiaB family [Brucella sp. BO2]
          Length = 467

 Score =  577 bits (1487), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 269/442 (60%), Positives = 343/442 (77%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ FVK+YGCQMNVYDS RM D   ++GY   ++ DDADL++LNTCHIREKA+EK+YS L
Sbjct: 23  RKVFVKTYGCQMNVYDSQRMADSLAAEGYVATDTPDDADLVLLNTCHIREKASEKLYSAL 82

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR+R +K++R  +G +L + VAGCVAQAEG+EILRR+P V++V+GPQTY+RLP  L R R
Sbjct: 83  GRLRKMKDARAADGKELTIGVAGCVAQAEGQEILRRAPNVDLVIGPQTYHRLPNALARVR 142

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G++VV+TDY++EDKFE L        RKRGV+AFLT+QEGCDKFCTFCVVPYTRG E+S
Sbjct: 143 GGEKVVETDYAIEDKFEHLPAPRREETRKRGVSAFLTVQEGCDKFCTFCVVPYTRGSEVS 202

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           RS+ Q+V EA +L D+GV E+TLLGQNVNAW G+G DG +    +LL+ L+ I G+ RLR
Sbjct: 203 RSVKQIVAEAERLADSGVRELTLLGQNVNAWHGEGEDGREWGLGELLFRLARIPGIARLR 262

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           YTTSHPRDM D LI AH DL  LMPYLHLPVQSGSDRILK+MNRRH A EY ++I+RIR 
Sbjct: 263 YTTSHPRDMDDSLIAAHRDLRQLMPYLHLPVQSGSDRILKAMNRRHKADEYLRLIERIRD 322

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           VRPD+A+S DFIVGFPGETD DF  TM LV ++ YAQA+SFKYSPR GTPG+++ + V+E
Sbjct: 323 VRPDMALSGDFIVGFPGETDQDFEDTMQLVREVNYAQAYSFKYSPRPGTPGADLDDHVEE 382

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
            VK ERL  LQ  L  QQ  F D+ +G+ ++VL+EK G+E G++VGRSPWL  V+++   
Sbjct: 383 AVKDERLQRLQALLSAQQYDFQDSMIGRKMDVLLEKPGREAGQMVGRSPWLLPVIIDDNK 442

Query: 445 HNIGDIIKVRITDVKISTLYGE 466
             +GDII V+I     ++L  +
Sbjct: 443 DRVGDIIHVKIVSTGTNSLIAQ 464


>gi|62290991|ref|YP_222784.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Brucella
           abortus bv. 1 str. 9-941]
 gi|82700900|ref|YP_415474.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Brucella
           melitensis biovar Abortus 2308]
 gi|189025203|ref|YP_001935971.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Brucella
           abortus S19]
 gi|237816493|ref|ZP_04595486.1| RNA modification enzyme, MiaB family [Brucella abortus str. 2308 A]
 gi|254690285|ref|ZP_05153539.1| hypothetical protein Babob68_08952 [Brucella abortus bv. 6 str.
           870]
 gi|254694773|ref|ZP_05156601.1| hypothetical protein Babob3T_08948 [Brucella abortus bv. 3 str.
           Tulya]
 gi|254731314|ref|ZP_05189892.1| hypothetical protein Babob42_08980 [Brucella abortus bv. 4 str.
           292]
 gi|256258538|ref|ZP_05464074.1| hypothetical protein Babob9C_14557 [Brucella abortus bv. 9 str.
           C68]
 gi|260546254|ref|ZP_05821994.1| RNA modification protein [Brucella abortus NCTC 8038]
 gi|260755825|ref|ZP_05868173.1| RNA modification protein [Brucella abortus bv. 6 str. 870]
 gi|260759048|ref|ZP_05871396.1| RNA modification protein [Brucella abortus bv. 4 str. 292]
 gi|260884850|ref|ZP_05896464.1| RNA modification protein [Brucella abortus bv. 9 str. C68]
 gi|261215100|ref|ZP_05929381.1| RNA modification protein [Brucella abortus bv. 3 str. Tulya]
 gi|297247377|ref|ZP_06931095.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Brucella abortus bv. 5
           str. B3196]
 gi|75496027|sp|Q57AB1|MIAB_BRUAB RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|123740938|sp|Q2YQS8|MIAB_BRUA2 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|229890451|sp|B2S9E5|MIAB_BRUA1 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|62197123|gb|AAX75423.1| conserved hypothetical protein [Brucella abortus bv. 1 str. 9-941]
 gi|82617001|emb|CAJ12110.1| Deoxyribonuclease/rho motif-related TRAM:Protein of unknown
           function UPF0004:tRNA-i(6)A37 modification enzyme
           MiaB:Elongator [Brucella melitensis biovar Abortus 2308]
 gi|189020775|gb|ACD73497.1| hypothetical protein BAbS19_I20150 [Brucella abortus S19]
 gi|237788560|gb|EEP62775.1| RNA modification enzyme, MiaB family [Brucella abortus str. 2308 A]
 gi|260096361|gb|EEW80237.1| RNA modification protein [Brucella abortus NCTC 8038]
 gi|260669366|gb|EEX56306.1| RNA modification protein [Brucella abortus bv. 4 str. 292]
 gi|260675933|gb|EEX62754.1| RNA modification protein [Brucella abortus bv. 6 str. 870]
 gi|260874378|gb|EEX81447.1| RNA modification protein [Brucella abortus bv. 9 str. C68]
 gi|260916707|gb|EEX83568.1| RNA modification protein [Brucella abortus bv. 3 str. Tulya]
 gi|297174546|gb|EFH33893.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Brucella abortus bv. 5
           str. B3196]
          Length = 467

 Score =  577 bits (1487), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 268/442 (60%), Positives = 344/442 (77%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ FVK+YGCQMNVYDS RM D   ++GY   ++ DDADL++LNTCHIREKA+EK+YS L
Sbjct: 23  RKVFVKTYGCQMNVYDSQRMADSLAAEGYVATDTPDDADLVLLNTCHIREKASEKLYSAL 82

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR+R ++++R  +G +L + VAGCVAQAEG+EILRR+P V++V+GPQTY+RLP  L R R
Sbjct: 83  GRLRKMRDARAADGKELTIGVAGCVAQAEGQEILRRAPNVDLVIGPQTYHRLPNALARVR 142

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G++VV+TDY++EDKFE L        RKRGV+AFLT+QEGCDKFCTFCVVPYTRG E+S
Sbjct: 143 GGEKVVETDYAIEDKFEHLPAPRREETRKRGVSAFLTVQEGCDKFCTFCVVPYTRGSEVS 202

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           RS+ Q+V EA +L D+GV E+TLLGQNVNAW G+G DG +    +LL+ L+ I G+ RLR
Sbjct: 203 RSVKQIVAEAERLADSGVRELTLLGQNVNAWHGEGEDGREWGLGELLFRLARIPGIARLR 262

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           YTTSHPRDM D LI AH DL  LMPYLHLPVQSGSDRILK+MNRRH A EY ++I+RIR+
Sbjct: 263 YTTSHPRDMDDSLIAAHRDLRQLMPYLHLPVQSGSDRILKAMNRRHKADEYLRLIERIRN 322

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           VRPD+A+S DFIVGFPGETD DF  TM LV  + YAQA+SFKYSPR GTPG+++ + V+E
Sbjct: 323 VRPDMALSGDFIVGFPGETDQDFEDTMQLVRDVNYAQAYSFKYSPRPGTPGADLDDHVEE 382

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
            VK ERL  LQ  L  QQ +F D+ +G+ ++VL+EK G+E G++VGRSPWL  V+++   
Sbjct: 383 AVKDERLQRLQALLSAQQYAFQDSMIGRKMDVLLEKPGREAGQMVGRSPWLLPVIIDDNK 442

Query: 445 HNIGDIIKVRITDVKISTLYGE 466
             +GDII V+I     ++L  +
Sbjct: 443 DRVGDIIHVKIVSTGTNSLIAQ 464


>gi|254718191|ref|ZP_05180002.1| RNA modification protein [Brucella sp. 83/13]
 gi|265983149|ref|ZP_06095884.1| RNA modification protein [Brucella sp. 83/13]
 gi|306837705|ref|ZP_07470574.1| RNA modification enzyme, MiaB family [Brucella sp. NF 2653]
 gi|264661741|gb|EEZ32002.1| RNA modification protein [Brucella sp. 83/13]
 gi|306407263|gb|EFM63473.1| RNA modification enzyme, MiaB family [Brucella sp. NF 2653]
          Length = 467

 Score =  577 bits (1487), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 269/442 (60%), Positives = 344/442 (77%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ FVK+YGCQMNVYDS RM D   ++GY   ++ DDADL++LNTCHIREKA+EK+YS L
Sbjct: 23  RKVFVKTYGCQMNVYDSQRMADSLAAEGYVATDTPDDADLVLLNTCHIREKASEKLYSAL 82

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR+R +K++R  +G +L + VAGCVAQAEG+EILRR+P V++V+GPQTY+RLP  L R R
Sbjct: 83  GRLRKMKDARAADGKELTIGVAGCVAQAEGQEILRRAPNVDLVIGPQTYHRLPNALARVR 142

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G++VV+TDY++EDKFE L        RKRGV+AFLT+QEGCDKFCTFCVVPYTRG E+S
Sbjct: 143 GGEKVVETDYAIEDKFEHLPAPRCEETRKRGVSAFLTVQEGCDKFCTFCVVPYTRGSEVS 202

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           RS+ Q+V EA +L D+GV E+TLLGQNVNAW G+G DG +    +LL+ L+ I G+ RLR
Sbjct: 203 RSVKQIVAEAERLADSGVRELTLLGQNVNAWHGEGEDGREWGLGELLFRLARIPGIARLR 262

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           YTTSHPRDM D LI AH DL  LMPYLHLPVQSGSDRILK+MNRRH A EY ++I+RIR 
Sbjct: 263 YTTSHPRDMDDSLIAAHRDLRQLMPYLHLPVQSGSDRILKAMNRRHKADEYLRLIERIRD 322

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           VRPD+A+S DFIVGFPGETD DF  TM LV ++ YAQA+SFKYSPR GTPG+++ + V+E
Sbjct: 323 VRPDMALSGDFIVGFPGETDQDFEDTMQLVREVNYAQAYSFKYSPRPGTPGADLDDHVEE 382

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
            VK ERL  LQ  L  QQ +F D+ +G+ ++VL+EK G+E G++VGRSPWL  V+++   
Sbjct: 383 AVKDERLQRLQALLSAQQYAFQDSMIGRKMDVLLEKPGREAGQMVGRSPWLLPVIIDDNK 442

Query: 445 HNIGDIIKVRITDVKISTLYGE 466
             +GDII V+I     ++L  +
Sbjct: 443 DRVGDIIHVKIVSTGTNSLIAQ 464


>gi|148559930|ref|YP_001259948.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Brucella ovis
           ATCC 25840]
 gi|229890453|sp|A5VTA1|MIAB_BRUO2 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|148371187|gb|ABQ61166.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Brucella ovis ATCC 25840]
          Length = 467

 Score =  577 bits (1486), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 268/442 (60%), Positives = 343/442 (77%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ FVK+YGCQMNVYDS RM D   ++GY   ++ DDADL++LNTCHIREKA+EK+YS L
Sbjct: 23  RKVFVKTYGCQMNVYDSQRMADSLAAEGYVATDTPDDADLVLLNTCHIREKASEKLYSAL 82

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR+R +K++R  +G +L + VAGCVAQAEG+EILRR+P V++V+GPQTY+RLP  L R R
Sbjct: 83  GRLRKMKDARAADGKELTIGVAGCVAQAEGQEILRRAPNVDLVIGPQTYHRLPNALARVR 142

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G++VV+TDY++EDKFE L        RKRGV+AFL +QEGCDKFCTFCVVPYTRG E+S
Sbjct: 143 GGEKVVETDYAIEDKFEHLPAPRREETRKRGVSAFLAVQEGCDKFCTFCVVPYTRGSEVS 202

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           RS+ Q+V EA +L D+GV E+TLLGQNVNAW G+G DG +    +LL+ L+ I G+ RLR
Sbjct: 203 RSVKQIVAEAERLADSGVRELTLLGQNVNAWHGEGEDGREWGLGELLFRLARIPGIARLR 262

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           YTTSHPRDM D LI AH DL  LMPYLHLPVQSGSDRILK+MNRRH A EY ++I+RIR+
Sbjct: 263 YTTSHPRDMDDSLIAAHRDLRQLMPYLHLPVQSGSDRILKAMNRRHKADEYLRLIERIRN 322

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           VRPD+A+S DFIVGFPGETD DF  TM LV  + YAQA+SFKYSPR GTPG+++ + V+E
Sbjct: 323 VRPDMALSGDFIVGFPGETDQDFEDTMQLVRDVNYAQAYSFKYSPRPGTPGADLDDHVEE 382

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
            VK ERL  LQ  L  QQ +F D+ +G+ ++VL+EK G+E G++VGRSPWL  V+++   
Sbjct: 383 AVKDERLQRLQALLSAQQYAFQDSMIGRKMDVLLEKPGREAGQMVGRSPWLLPVIIDDNK 442

Query: 445 HNIGDIIKVRITDVKISTLYGE 466
             +GDII V+I     ++L  +
Sbjct: 443 DRVGDIIHVKIVSTGTNSLIAQ 464


>gi|17988259|ref|NP_540893.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Brucella
           melitensis bv. 1 str. 16M]
 gi|225853579|ref|YP_002733812.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Brucella
           melitensis ATCC 23457]
 gi|256045757|ref|ZP_05448635.1| RNA modification enzyme, MiaB family protein [Brucella melitensis
           bv. 1 str. Rev.1]
 gi|256112476|ref|ZP_05453397.1| RNA modification enzyme, MiaB family protein [Brucella melitensis
           bv. 3 str. Ether]
 gi|256262937|ref|ZP_05465469.1| RNA modification protein [Brucella melitensis bv. 2 str. 63/9]
 gi|260563053|ref|ZP_05833539.1| RNA modification protein [Brucella melitensis bv. 1 str. 16M]
 gi|265992174|ref|ZP_06104731.1| RNA modification protein [Brucella melitensis bv. 1 str. Rev.1]
 gi|265993912|ref|ZP_06106469.1| RNA modification protein [Brucella melitensis bv. 3 str. Ether]
 gi|81851031|sp|Q8YEA2|MIAB_BRUME RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|17984028|gb|AAL53157.1| miab protein [Brucella melitensis bv. 1 str. 16M]
 gi|225641944|gb|ACO01858.1| RNA modification enzyme, MiaB family protein [Brucella melitensis
           ATCC 23457]
 gi|260153069|gb|EEW88161.1| RNA modification protein [Brucella melitensis bv. 1 str. 16M]
 gi|262764893|gb|EEZ10814.1| RNA modification protein [Brucella melitensis bv. 3 str. Ether]
 gi|263003240|gb|EEZ15533.1| RNA modification protein [Brucella melitensis bv. 1 str. Rev.1]
 gi|263092811|gb|EEZ16986.1| RNA modification protein [Brucella melitensis bv. 2 str. 63/9]
 gi|326410151|gb|ADZ67216.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Brucella
           melitensis M28]
 gi|326539870|gb|ADZ88085.1| RNA modification enzyme, MiaB family protein [Brucella melitensis
           M5-90]
          Length = 467

 Score =  576 bits (1484), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 268/442 (60%), Positives = 343/442 (77%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ FVK+YGCQMNVYDS RM D   ++GY   ++ DDADL++LNTCHIREKA+EK+YS L
Sbjct: 23  RKVFVKTYGCQMNVYDSQRMADSLAAEGYVATDTPDDADLVLLNTCHIREKASEKLYSAL 82

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR+R +K++R  +G +L + VAGCVAQAEG+EILRR+P V++V+GPQTY+RLP  L R R
Sbjct: 83  GRLRKMKDARAADGKELTIGVAGCVAQAEGQEILRRAPNVDLVIGPQTYHRLPNALARVR 142

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G++VV+TDY++EDKFE L        RKRGV+AFLT+QEGCDKFCTFCVVPYTRG E+S
Sbjct: 143 GGEKVVETDYAIEDKFEHLPAPRREETRKRGVSAFLTVQEGCDKFCTFCVVPYTRGSEVS 202

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           RS+ Q+V EA +L D+GV E+TLLGQNVNAW G+G DG +    +LL+ L+ I G+  LR
Sbjct: 203 RSVKQIVAEAERLADSGVRELTLLGQNVNAWHGEGEDGREWGLGELLFRLARIPGIAHLR 262

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           YTTSHPRDM D LI AH DL  LMPYLHLPVQSGSDRILK+MNRRH A EY ++I+RIR+
Sbjct: 263 YTTSHPRDMDDSLIAAHRDLRQLMPYLHLPVQSGSDRILKAMNRRHKADEYLRLIERIRN 322

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           VRPD+A+S DFIVGFPGETD DF  TM LV  + YAQA+SFKYSPR GTPG+++ + V+E
Sbjct: 323 VRPDMALSGDFIVGFPGETDQDFEDTMQLVRDVNYAQAYSFKYSPRPGTPGADLDDHVEE 382

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
            VK ERL  LQ  L  QQ +F D+ +G+ ++VL+EK G+E G++VGRSPWL  V+++   
Sbjct: 383 AVKDERLQRLQALLSAQQYAFQDSMIGRKMDVLLEKPGREAGQMVGRSPWLLPVIIDDNK 442

Query: 445 HNIGDIIKVRITDVKISTLYGE 466
             +GDII V+I     ++L  +
Sbjct: 443 DRVGDIIHVKIVSTGTNSLIAQ 464


>gi|153008094|ref|YP_001369309.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Ochrobactrum
           anthropi ATCC 49188]
 gi|229890580|sp|A6WWX6|MIAB_OCHA4 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|151559982|gb|ABS13480.1| RNA modification enzyme, MiaB family [Ochrobactrum anthropi ATCC
           49188]
          Length = 462

 Score =  575 bits (1482), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 270/442 (61%), Positives = 343/442 (77%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ FVK+YGCQMNVYDS RM D   ++GY   ++ DDADL++LNTCHIREKA+EK+YS L
Sbjct: 18  RKVFVKTYGCQMNVYDSQRMADSLAAEGYVATDTPDDADLVLLNTCHIREKASEKLYSAL 77

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR+R +K++R   G +L + VAGCVAQAEG+EILRR+P V++V+GPQTY+RLP  L R R
Sbjct: 78  GRLRKMKDAREANGKELTIGVAGCVAQAEGQEILRRAPNVDLVIGPQTYHRLPNALARVR 137

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G++VV+T+Y++EDKFE L        RKRGV+AFLT+QEGCDKFCTFCVVPYTRG E+S
Sbjct: 138 SGEKVVETEYALEDKFEHLPSPKREETRKRGVSAFLTVQEGCDKFCTFCVVPYTRGSEVS 197

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           RS+ Q+V EA +L D+GV E+TLLGQNVNAW G G DG +    +LL+ L+ I G+ RLR
Sbjct: 198 RSVKQIVAEAERLADSGVRELTLLGQNVNAWHGAGDDGREWGLGELLFRLARIPGIARLR 257

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           YTTSHPRDM D LI AH DL  LMPYLHLPVQSGSDRILK+MNRRH A EY ++I+RIR 
Sbjct: 258 YTTSHPRDMDDSLIAAHRDLRQLMPYLHLPVQSGSDRILKAMNRRHKADEYVRLIERIRE 317

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           VRPD+A+S DFIVGFPGETD DF  TM LV  + YAQA+SFKYSPR GTPG+++ + V+E
Sbjct: 318 VRPDLALSGDFIVGFPGETDQDFEDTMRLVRDVNYAQAYSFKYSPRPGTPGADLDDHVEE 377

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
            VK ERL  LQ  L EQQ +F D+ +G+ ++VL+EK G+  G++VGRSPWL  V+++  N
Sbjct: 378 AVKDERLQRLQALLSEQQYAFQDSMIGREMDVLLEKPGRVAGQMVGRSPWLLPVIIDDSN 437

Query: 445 HNIGDIIKVRITDVKISTLYGE 466
             +GDII V+IT    ++L  +
Sbjct: 438 DRVGDIIHVKITSTGTNSLIAQ 459


>gi|256060114|ref|ZP_05450296.1| RNA modification protein [Brucella neotomae 5K33]
 gi|261324091|ref|ZP_05963288.1| RNA modification protein [Brucella neotomae 5K33]
 gi|261300071|gb|EEY03568.1| RNA modification protein [Brucella neotomae 5K33]
          Length = 467

 Score =  575 bits (1481), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 268/442 (60%), Positives = 343/442 (77%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ FVK+YGCQMNVYDS RM D   ++GY   ++ DDADL++LNTCHIREKA+EK+YS L
Sbjct: 23  RKVFVKTYGCQMNVYDSQRMADSLAAEGYVATDTPDDADLVLLNTCHIREKASEKLYSAL 82

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR+R +K++R  +G +L + VAGCVAQAEG+EILRR+P V++V+GPQTY+RLP  L R R
Sbjct: 83  GRLRKMKDARAADGKELTIGVAGCVAQAEGQEILRRAPNVDLVIGPQTYHRLPNALARVR 142

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G++VV+TDY++EDKFE L        RKRGV+AFLT+QEGCDKFCTFCVVPYTRG E+S
Sbjct: 143 GGEKVVETDYAIEDKFEHLPAPRREETRKRGVSAFLTVQEGCDKFCTFCVVPYTRGSEVS 202

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           RS+ Q+V EA +L D+GV E+TLLGQNVNAW G+  DG +    +LL+ L+ I G+ RLR
Sbjct: 203 RSVKQIVAEAERLADSGVRELTLLGQNVNAWHGEVEDGREWGLGELLFRLARIPGIARLR 262

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           YTTSHPRDM D LI AH DL  LMPYLHLPVQSGSDRILK+MNRRH A EY ++I+RIR+
Sbjct: 263 YTTSHPRDMDDSLIAAHRDLRQLMPYLHLPVQSGSDRILKAMNRRHKADEYLRLIERIRN 322

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           VRPD+A+S DFIVGFPGETD DF  TM LV  + YAQA+SFKYSPR GTPG+++ + V+E
Sbjct: 323 VRPDMALSGDFIVGFPGETDQDFEDTMQLVRDVNYAQAYSFKYSPRPGTPGADLDDHVEE 382

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
            VK ERL  LQ  L  QQ +F D+ +G+ ++VL+EK G+E G++VGRSPWL  V+++   
Sbjct: 383 AVKDERLQRLQALLSAQQYAFQDSMIGRKMDVLLEKPGREAGQMVGRSPWLLPVIIDDNK 442

Query: 445 HNIGDIIKVRITDVKISTLYGE 466
             +GDII V+I     ++L  +
Sbjct: 443 DRVGDIIHVKIVSTGTNSLIAQ 464


>gi|239833202|ref|ZP_04681531.1| RNA modification enzyme, MiaB family [Ochrobactrum intermedium LMG
           3301]
 gi|239825469|gb|EEQ97037.1| RNA modification enzyme, MiaB family [Ochrobactrum intermedium LMG
           3301]
          Length = 462

 Score =  574 bits (1480), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 270/442 (61%), Positives = 343/442 (77%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ FVK+YGCQMNVYDS RM D   ++GY   ++ DDADL++LNTCHIREKA+EK+YS L
Sbjct: 18  RKVFVKTYGCQMNVYDSQRMADSLAAEGYVATDTPDDADLVLLNTCHIREKASEKLYSAL 77

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR+R +K++R   G +L + VAGCVAQAEG+EILRR+P V++V+GPQTY+RLP  L R R
Sbjct: 78  GRLRKMKDAREANGKELTIGVAGCVAQAEGQEILRRAPNVDLVIGPQTYHRLPNALARVR 137

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G++VV+T+Y++EDKFE L        RKRGV+AFLT+QEGCDKFCTFCVVPYTRG E+S
Sbjct: 138 SGEKVVETEYALEDKFEHLPSPRREETRKRGVSAFLTVQEGCDKFCTFCVVPYTRGSEVS 197

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           RS+ Q+V EA +L D+GV E+TLLGQNVNAW G G DG +    +LL+ L+ I G+ RLR
Sbjct: 198 RSVKQIVAEAERLADSGVRELTLLGQNVNAWHGAGDDGREWGLGELLFRLARIPGIARLR 257

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           YTTSHPRDM D LI AH DL  LMPYLHLPVQSGSDRILK+MNRRH A EY ++I+RIR 
Sbjct: 258 YTTSHPRDMDDSLIAAHRDLRQLMPYLHLPVQSGSDRILKAMNRRHKADEYVRLIERIRE 317

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           VRPD+A+S DFIVGFPGETD DF  TM LV ++ YAQA+SFKYSPR GTPG+++ + V+E
Sbjct: 318 VRPDMALSGDFIVGFPGETDQDFEDTMQLVREVNYAQAYSFKYSPRPGTPGADLDDHVEE 377

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
            VK ERL  LQ  L EQQ +F D+ +G+ ++VL+EK G+  G++VGRSPWL  V+++   
Sbjct: 378 AVKDERLQRLQALLSEQQYAFQDSMIGREMDVLLEKPGRVAGQMVGRSPWLLPVIIDDNQ 437

Query: 445 HNIGDIIKVRITDVKISTLYGE 466
             IGDII V+IT    ++L  +
Sbjct: 438 DRIGDIIHVKITSTGTNSLIAQ 459


>gi|13474614|ref|NP_106183.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Mesorhizobium
           loti MAFF303099]
 gi|81778168|sp|Q98BK3|MIAB_RHILO RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|14025368|dbj|BAB51969.1| mlr5534 [Mesorhizobium loti MAFF303099]
          Length = 450

 Score =  573 bits (1476), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 275/449 (61%), Positives = 345/449 (76%)

Query: 20  QCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEK 79
           +    ++ F+K+YGCQMNVYDS RM D   + GY   +++D+ADL++LNTCHIREKAAEK
Sbjct: 2   RATAAKKVFIKTYGCQMNVYDSQRMGDALAADGYTATDAIDEADLVLLNTCHIREKAAEK 61

Query: 80  VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL 139
           VYS LGRIR++K  R   G +LL+ VAGCVAQAEG EI+RRSP V++V+GPQTY+RLP++
Sbjct: 62  VYSELGRIRDMKAERAIAGRELLIGVAGCVAQAEGAEIIRRSPAVDLVIGPQTYHRLPDV 121

Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           L R R G+++V+TDY++EDKF+ L         KRGVTAFLT+QEGCDKFCTFCVVPYTR
Sbjct: 122 LARVRGGEKIVETDYAIEDKFDHLPQPKRAEVIKRGVTAFLTVQEGCDKFCTFCVVPYTR 181

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G E+SR ++Q+V EA +L + GV E+TLLGQNVNAW G+G +GE+     LL+ L+EI G
Sbjct: 182 GSEVSRPVAQIVAEAERLAEAGVREVTLLGQNVNAWHGQGENGEEWGLGRLLFRLAEIPG 241

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           L RLRYTTSHPRDM D LI AH DL  LMPYLHLPVQSGSDRILK+MNRRHTA +Y  ++
Sbjct: 242 LARLRYTTSHPRDMDDELISAHRDLPSLMPYLHLPVQSGSDRILKAMNRRHTARDYLALL 301

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
           DRIR+ RPDIA+S DFIVGFPGET+ DF ATM+LV ++ YA AFSFKYSPR GTPG+ M 
Sbjct: 302 DRIRAARPDIALSGDFIVGFPGETEADFEATMELVRQVNYASAFSFKYSPRPGTPGAEMP 361

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV 439
           + V E +K ERL  LQ  L +QQ  F  + VG  I+ LIEK G++ G+ VGR+PWLQ V+
Sbjct: 362 DHVPETLKDERLQRLQALLLKQQQGFGSSLVGSTIDTLIEKPGRQAGQKVGRTPWLQPVI 421

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
           ++ K   IGDII+VRIT    ++L+ EL 
Sbjct: 422 VDEKAGEIGDIIQVRITKTGYNSLFAELA 450


>gi|254470768|ref|ZP_05084171.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Pseudovibrio sp. JE062]
 gi|211959910|gb|EEA95107.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Pseudovibrio sp. JE062]
          Length = 470

 Score =  569 bits (1467), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 267/455 (58%), Positives = 342/455 (75%)

Query: 14  VSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIR 73
            ++ +++    ++ F+K+YGCQMNVYDS RM D   + GYE+  + DDADL++LNTCHIR
Sbjct: 16  ATEALEKTEATRKVFIKTYGCQMNVYDSDRMNDALSNDGYEKTENPDDADLVILNTCHIR 75

Query: 74  EKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTY 133
           EKAAEKVYS LGRIR LK  + K+G  ++V VAGCVAQAEG EI RR+P+V++VVGPQ+Y
Sbjct: 76  EKAAEKVYSELGRIRKLKEEKAKDGKQMMVSVAGCVAQAEGAEISRRAPVVDLVVGPQSY 135

Query: 134 YRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC 193
           +RLPELL RA  G +VV+T++ ++DKF+ L+       RKRGVTAF+T+QEGCDKFCTFC
Sbjct: 136 HRLPELLTRASNGSKVVETEFDIQDKFKHLATPSKEAVRKRGVTAFVTVQEGCDKFCTFC 195

Query: 194 VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS 253
           VVPYTRG E+SR + Q+V E  +L   GV E+TLLGQNVNAW G+G DG +    +LL+ 
Sbjct: 196 VVPYTRGAEVSRKVEQIVMETERLAAAGVREVTLLGQNVNAWHGEGPDGREWGLGELLFR 255

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
           L++I G+ RLRYTTSHPRDM D LI AH DLD+LMPYLHLPVQSGSD ILK+MNR+HT  
Sbjct: 256 LAKIDGIERLRYTTSHPRDMEDSLIAAHRDLDILMPYLHLPVQSGSDAILKAMNRKHTRD 315

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
           +Y ++IDRIR  R DIA+S DFIVGFPGETD D + T+DL+ ++ Y  AFSFKYSPR GT
Sbjct: 316 DYFRLIDRIREARDDIALSGDFIVGFPGETDQDHKDTLDLIRRVTYGSAFSFKYSPRPGT 375

Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSP 433
           PG+ + EQ+DE VK+ERL  LQ+ L  QQ  FN + +G+ I+VL EK G+ +G+L GRSP
Sbjct: 376 PGATLEEQIDEQVKSERLAELQELLSTQQKDFNASLIGKTIDVLFEKEGRREGQLAGRSP 435

Query: 434 WLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           WLQ V +N+     G+I  V I     ++L G LV
Sbjct: 436 WLQPVHVNAPLDLYGEIRSVEIVAASANSLEGRLV 470


>gi|260461993|ref|ZP_05810238.1| RNA modification enzyme, MiaB family [Mesorhizobium opportunistum
           WSM2075]
 gi|259032240|gb|EEW33506.1| RNA modification enzyme, MiaB family [Mesorhizobium opportunistum
           WSM2075]
          Length = 473

 Score =  564 bits (1453), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 275/453 (60%), Positives = 341/453 (75%), Gaps = 4/453 (0%)

Query: 20  QCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEK 79
             +  ++ F+K+YGCQMNVYDS RM D   + GY    ++ +ADL++LNTCHIREKAAEK
Sbjct: 21  HAVAAKKVFIKTYGCQMNVYDSQRMADALAADGYTATGAIGEADLVLLNTCHIREKAAEK 80

Query: 80  VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL 139
           VYS LGRIR++K  R   G +LL+ VAGCVAQAEG EI+RRSP V++V+GPQTY+RLP++
Sbjct: 81  VYSELGRIRDMKAERASVGRELLIGVAGCVAQAEGAEIIRRSPAVDLVIGPQTYHRLPDV 140

Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           L R R G+++V+TDY++EDKFE L         KRGVTAFLT+QEGCDKFCTFCVVPYTR
Sbjct: 141 LARVRGGEKIVETDYAIEDKFEHLPQPKRAEVIKRGVTAFLTVQEGCDKFCTFCVVPYTR 200

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG----KGLDGEKCTFSDLLYSLS 255
           G E+SR ++Q+V EA +L + GV E+TLLGQNVNAW G    KG   E+     LL+ L+
Sbjct: 201 GSEVSRPVAQIVAEAERLAEAGVREVTLLGQNVNAWHGQGDTKGGRTEEWGLGRLLHRLA 260

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
           +I GL RLRYTTSHPRDM D LI AH DL  LMPYLHLPVQSGSDRILK+MNRRHTA +Y
Sbjct: 261 QIPGLARLRYTTSHPRDMDDELIAAHRDLPSLMPYLHLPVQSGSDRILKAMNRRHTARDY 320

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
             ++DRIR+ RPDIA+S DFIVGFPGET+ DF ATM+LV ++ YA AFSFKYSPR GTPG
Sbjct: 321 LALLDRIRAARPDIALSGDFIVGFPGETEADFEATMELVRQVNYASAFSFKYSPRPGTPG 380

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWL 435
           + M + V E VK ERL  LQ  L +QQ  F  + +G  I+ LIEK G++ G+ VGRSPWL
Sbjct: 381 AEMADHVPETVKDERLQRLQALLLKQQQDFGLSLIGSTIDTLIEKPGRQSGQKVGRSPWL 440

Query: 436 QSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           Q V+++ K   IGDII+VRIT    ++L+ EL 
Sbjct: 441 QPVIVDEKAGEIGDIIQVRITKTGYNSLFAELA 473


>gi|319405110|emb|CBI78714.1| bifunctional enzyme [Bartonella sp. AR 15-3]
          Length = 460

 Score =  563 bits (1451), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 264/445 (59%), Positives = 343/445 (77%), Gaps = 2/445 (0%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P++ F+K+YGCQMNVYDS RM D   +QGY    + +DADLI++NTCHIREKAAEK+YS 
Sbjct: 15  PKKVFIKTYGCQMNVYDSQRMNDSLSTQGYIATQTPNDADLILINTCHIREKAAEKLYSD 74

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR++ ++  R  +   L++ V GCVAQAEG EILRR+P V+ ++GPQ Y+RLPELL++ 
Sbjct: 75  LGRLQIIRQGRTHDK-PLMIGVTGCVAQAEGNEILRRAPTVDFIIGPQMYHRLPELLKQV 133

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           + GK+VV+TDY+VEDKF +L   +    ++RG++AFLT+QEGCDKFCTFCVVPYTRG EI
Sbjct: 134 KQGKKVVETDYAVEDKFTQLPPHNKRAVQQRGISAFLTVQEGCDKFCTFCVVPYTRGAEI 193

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SRS+ Q+ DEAR+LI+ GV EITLLGQNVNAWRG+ +DG+     DLL+ L++I GL RL
Sbjct: 194 SRSVKQITDEARQLIEAGVKEITLLGQNVNAWRGQSIDGKTWRLGDLLHHLAKIDGLKRL 253

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           RYTTSHPRDM D LI AH DLD+LMPYLHLPVQSGSDRILK+MNR+H +  Y  +ID+IR
Sbjct: 254 RYTTSHPRDMDDSLIAAHRDLDILMPYLHLPVQSGSDRILKAMNRQHKSIHYLHLIDKIR 313

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           + +PDIA S DFIVGFPGETD+DF  T+ L+ ++GY+ A+SFKYSPR GT G+ M   VD
Sbjct: 314 AAKPDIAFSGDFIVGFPGETDEDFEETIKLIKQVGYSSAYSFKYSPRPGTVGATMKNHVD 373

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
           E VK  RL  LQ  L +QQ +F  + +GQ  +VLIEK G+  G++VGRSPWL  VV+N++
Sbjct: 374 ETVKNTRLQHLQTILLDQQHTFLHSKIGQTTDVLIEKIGRYSGQMVGRSPWLLPVVINTQ 433

Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468
             ++G I+K+RI D   ++  GE +
Sbjct: 434 T-SVGTIMKIRIKDASSNSFVGEKI 457


>gi|163867522|ref|YP_001608721.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bartonella
           tribocorum CIP 105476]
 gi|229890428|sp|A9IMW7|MIAB_BART1 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|161017168|emb|CAK00726.1| bifunctional enzyme [Bartonella tribocorum CIP 105476]
          Length = 458

 Score =  559 bits (1441), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 264/447 (59%), Positives = 341/447 (76%), Gaps = 2/447 (0%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + P++ F+K+YGCQMNVYDS RM D   SQGY    + +DADLI++NTCHIREKAAEK+Y
Sbjct: 12  VAPKKVFIKTYGCQMNVYDSQRMTDSLSSQGYVTTQTPNDADLILVNTCHIREKAAEKLY 71

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S LGR+R ++  R  +   L V V GCVAQAEG EILRR+PIV++V+GPQ Y+RLPELLE
Sbjct: 72  SDLGRLRVMRQERTPDK-PLTVGVTGCVAQAEGSEILRRAPIVDLVIGPQMYHRLPELLE 130

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           +A+ GK++++TDY+VEDKF  L   +    RKRGV+AFLT+QEGCDKFCTFCVVPYTRG 
Sbjct: 131 KAKQGKKIIETDYAVEDKFAHLPPHNKRAVRKRGVSAFLTVQEGCDKFCTFCVVPYTRGA 190

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           EISRS+ Q+ +EAR+LI+ GV EITLLGQNVN W G+  DG+     DLLY L+++ GL 
Sbjct: 191 EISRSVEQITEEARQLIEAGVKEITLLGQNVNGWHGQSADGKTWRLGDLLYHLAKLDGLK 250

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           RLRYTTSHPRDM D LI AH DLD+LMPYLHLPVQSGSDRILK+MNR+H +  Y  +I++
Sbjct: 251 RLRYTTSHPRDMDDSLIAAHRDLDMLMPYLHLPVQSGSDRILKAMNRQHKSSYYLHLIEK 310

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           IR+ RPDIA S DFIVGFPGETD+DF  T+ L+ ++ Y+ A+SFKYSPR GT G+ M   
Sbjct: 311 IRAARPDIAFSGDFIVGFPGETDEDFEETIKLIQQVQYSSAYSFKYSPRPGTVGATMKNH 370

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           VDE+VK  RL  LQ  L EQQ +F  + +GQ  +VLIEK G+  G++VGRSPWL  VV++
Sbjct: 371 VDESVKDARLQHLQVLLLEQQNTFLRSKIGQKTDVLIEKPGRHSGQMVGRSPWLLPVVVD 430

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
           +++ + G ++++ I +   ++  GE+ 
Sbjct: 431 TES-STGSVVEIHIKNASSNSFVGEMT 456


>gi|319403640|emb|CBI77225.1| bifunctional enzyme [Bartonella rochalimae ATCC BAA-1498]
          Length = 460

 Score =  559 bits (1440), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 262/443 (59%), Positives = 339/443 (76%), Gaps = 2/443 (0%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P++ F+K+YGCQMNVYDS RM D   +QGY    + +DADLI++NTCHIREKAAEK+YS 
Sbjct: 15  PKKVFIKTYGCQMNVYDSQRMNDSLSAQGYIATQTPNDADLILINTCHIREKAAEKLYSD 74

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR++ ++  R  +   L++ V GCVAQAEG EILRR+P V+ ++GPQ Y+RLPELL++ 
Sbjct: 75  LGRLQIIRQGRTHDK-PLMIGVTGCVAQAEGNEILRRAPTVDFIIGPQMYHRLPELLKQV 133

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           + GK+V++TDY+VEDKF  L   +    R+RG++AFLT+QEGCDKFCTFCVVPYTRG EI
Sbjct: 134 KQGKKVIETDYAVEDKFSHLPPHNKQAVRQRGISAFLTVQEGCDKFCTFCVVPYTRGAEI 193

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SRS+ Q+  EA +LI+ GV EITLLGQNVNAW G+ +DG+     DLL+ L++I GL RL
Sbjct: 194 SRSVKQITAEAYQLIEAGVKEITLLGQNVNAWHGQSIDGKTWRLGDLLHHLAKIDGLKRL 253

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           RYTTSHPRDM D LI AH DLD+LMPYLHLPVQSGSDRILK+MNR+H +  Y  +ID+IR
Sbjct: 254 RYTTSHPRDMDDSLIAAHRDLDILMPYLHLPVQSGSDRILKAMNRQHKSIHYLNLIDKIR 313

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           + RPDIA S DFIVGFPGETD+DF  T+ L+ ++GY+ A+SFKYSPR GT G+ M   VD
Sbjct: 314 AARPDIAFSGDFIVGFPGETDEDFEETIKLIQQVGYSSAYSFKYSPRPGTVGATMKNHVD 373

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
           E VK  RL  LQ  L +QQ +F  + +GQ  +VLIEK G+  G+++GRSPWL  VV+N++
Sbjct: 374 ETVKNARLQHLQAILLDQQHTFLHSKIGQTTDVLIEKIGRHSGQMIGRSPWLLPVVVNTQ 433

Query: 444 NHNIGDIIKVRITDVKISTLYGE 466
             +IG I+K+RIT+   ++  GE
Sbjct: 434 A-SIGTIMKIRITNASSNSFIGE 455


>gi|319406556|emb|CBI80198.1| bifunctional enzyme [Bartonella sp. 1-1C]
          Length = 460

 Score =  556 bits (1434), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 260/443 (58%), Positives = 338/443 (76%), Gaps = 2/443 (0%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P++ F+K+YGCQMNVYDS RM D   +QGY    + +DADLI++NTCHIREKAAEK+YS 
Sbjct: 15  PKKVFIKTYGCQMNVYDSQRMNDSLSAQGYIATQTPNDADLILINTCHIREKAAEKLYSD 74

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR++ ++  R  +   L++ V GCVAQAEG EILRR+P V+ ++GPQ Y+RLPELL++ 
Sbjct: 75  LGRLQIIRQGRTHDK-PLMIGVTGCVAQAEGNEILRRAPTVDFIIGPQMYHRLPELLKQV 133

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           + GK+VV+TDY+VEDKF  L   +    R+RG++AFLT+QEGCDKFCTFCVVPYTRG EI
Sbjct: 134 KQGKKVVETDYAVEDKFSHLPPHNKQAVRQRGISAFLTVQEGCDKFCTFCVVPYTRGAEI 193

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SRS+ Q+  EA +LI+ GV EITLLGQNVNAW G+ +DG+     DLL+ L++I GL RL
Sbjct: 194 SRSVKQITAEAHQLIEAGVKEITLLGQNVNAWHGQSIDGKTWRLGDLLHHLAKIDGLKRL 253

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           RYTT+HPRDM D LI AH DLD+LMPYLHLPVQSGSDRILK+MNR+H +  Y  +ID+IR
Sbjct: 254 RYTTNHPRDMDDSLIAAHRDLDILMPYLHLPVQSGSDRILKAMNRQHKSIHYLNLIDKIR 313

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           + +PDIA S DFIVGFPGETD+DF  T+ L+ ++GY+ A+SFKYSPR GT G+ M   VD
Sbjct: 314 AAKPDIAFSGDFIVGFPGETDEDFEETIKLIKQVGYSSAYSFKYSPRPGTVGATMKNHVD 373

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
           E VK  RL  LQ  L +QQ +F  + +GQ  ++LIEK G+  G+++GRSPWL  VV+N++
Sbjct: 374 ETVKNTRLQHLQAILLDQQHTFLHSKIGQTTDILIEKIGRHSGQMIGRSPWLLPVVINTQ 433

Query: 444 NHNIGDIIKVRITDVKISTLYGE 466
              IG I+K+RIT+   ++  GE
Sbjct: 434 A-PIGTIMKIRITNASSNSFIGE 455


>gi|240849891|ref|YP_002971280.1| RNA modification enzyme, MiaB family [Bartonella grahamii as4aup]
 gi|240267014|gb|ACS50602.1| RNA modification enzyme, MiaB family [Bartonella grahamii as4aup]
          Length = 458

 Score =  556 bits (1433), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 264/447 (59%), Positives = 338/447 (75%), Gaps = 2/447 (0%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + P++ F+K+YGCQMNVYDS RM D   SQGY      +DADLI++NTCHIREKAAEK+Y
Sbjct: 12  VAPKKVFIKTYGCQMNVYDSQRMTDSLSSQGYVTTQIPNDADLILVNTCHIREKAAEKLY 71

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S LGR+R ++  R  +   L+V V GCVAQAEG EILRR+P V++V+GPQ Y+RLPELLE
Sbjct: 72  SDLGRLRVMRQERTPDK-PLMVGVTGCVAQAEGSEILRRAPTVDLVIGPQMYHRLPELLE 130

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           +A+ GK++++TDY+VEDKF  L   +    RKRGV+AFLT+QEGCDKFCTFCVVPYTRG 
Sbjct: 131 KAKQGKKIIETDYAVEDKFAHLPPHNKHAVRKRGVSAFLTVQEGCDKFCTFCVVPYTRGA 190

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           EISRS+ Q+ +EA +LI+ GV EITLLGQNVN W G+  DG+     DLLY L+++ GL 
Sbjct: 191 EISRSVEQITEEALQLIEAGVKEITLLGQNVNGWHGQSADGKTWRLGDLLYHLAKLDGLK 250

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           RLRYTTSHPRDM D LI AH DLD+LMPYLHLPVQSGSDRILK+MNR+H +  Y  +I++
Sbjct: 251 RLRYTTSHPRDMDDSLIAAHRDLDMLMPYLHLPVQSGSDRILKAMNRQHKSSHYLHLIEK 310

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           IR+ RPDIA S DFIVGFPGETD+DF  T+ L+ ++ Y+ A+SFKYSPR GT G+ M   
Sbjct: 311 IRTARPDIAFSGDFIVGFPGETDEDFEETIKLIQQVQYSSAYSFKYSPRPGTVGATMKNH 370

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           VDE+VK  RL  LQ  L EQQ +F  + +GQ   VLIEK G+  G++VGRSPWL  VV++
Sbjct: 371 VDESVKDARLQHLQVLLLEQQNAFLRSKIGQKTNVLIEKPGRHSGQMVGRSPWLLPVVVD 430

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
           ++  +IG +I++ I +   ++  GE+ 
Sbjct: 431 TEA-SIGSVIEIHIKNASSNSFVGEVT 456


>gi|90420542|ref|ZP_01228449.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90335270|gb|EAS49023.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 483

 Score =  555 bits (1431), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 267/439 (60%), Positives = 329/439 (74%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F+K+YGCQMNVYDS RM D     GY+    ++DADL++LNTCHIRE+AAEK+YS L
Sbjct: 18  RKVFIKTYGCQMNVYDSQRMGDALARDGYQPTEVIEDADLVLLNTCHIRERAAEKIYSEL 77

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GRI+ LK  + ++G ++ V VAGCVAQAEG+EI+ R+P+V++V+GPQTY+RLPE L R  
Sbjct: 78  GRIKLLKAEKAEQGVEMRVAVAGCVAQAEGQEIIDRAPVVDLVIGPQTYHRLPEALARVA 137

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G +VV+TDY+VEDKF  L  V     R RGVTAFLT+QEGCDKFCTFCVVPYTRG E+S
Sbjct: 138 RGDKVVETDYAVEDKFRHLPKVTAPQIRTRGVTAFLTVQEGCDKFCTFCVVPYTRGSEVS 197

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R L+Q++ EAR L   GV E+TLLGQNVN W G+   G       LL +L+EI G  RLR
Sbjct: 198 RPLTQIMGEARTLAAAGVREVTLLGQNVNGWSGQDEAGRDIGLGGLLRALAEIPGFARLR 257

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           YTTSHPRDM D LI AH DL  LMPYLHLPVQSGSDRILK+MNRRHT  +Y +++DRIR 
Sbjct: 258 YTTSHPRDMDDDLIAAHRDLPALMPYLHLPVQSGSDRILKAMNRRHTGADYLRLLDRIRQ 317

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
            RPDIA+S DFIVGFPGETD DF  TM+LV ++ YA AFSFKYS R GTPG+ M + VDE
Sbjct: 318 ARPDIALSGDFIVGFPGETDADFEDTMELVSEVRYASAFSFKYSARPGTPGATMDDHVDE 377

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
            VK+ERL  LQ  LRE QV F ++ VG+ I+VL+EK G+   + VGRSP+LQ VVL++  
Sbjct: 378 AVKSERLQRLQTLLREHQVDFAESLVGRDIDVLVEKPGRYPHQRVGRSPFLQPVVLDAAA 437

Query: 445 HNIGDIIKVRITDVKISTL 463
             IGDI+ VRI     ++L
Sbjct: 438 GEIGDIVTVRIESTLPNSL 456


>gi|114706886|ref|ZP_01439786.1| hypothetical protein FP2506_18759 [Fulvimarina pelagi HTCC2506]
 gi|114537834|gb|EAU40958.1| hypothetical protein FP2506_18759 [Fulvimarina pelagi HTCC2506]
          Length = 505

 Score =  553 bits (1426), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 266/442 (60%), Positives = 328/442 (74%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ FVK+YGCQMNVYDS RM D    +GYE  + ++DADL++LNTCHIREKAAEK+YS L
Sbjct: 42  RKVFVKTYGCQMNVYDSQRMGDALSGEGYEPTSIIEDADLVLLNTCHIREKAAEKIYSEL 101

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GRIR+LK  R + G    V VAGCVAQAEG EI+ R+P+V++V+GPQTY+RLP+ L RA 
Sbjct: 102 GRIRDLKAERAERGLKTQVAVAGCVAQAEGREIISRAPVVDLVIGPQTYHRLPQALTRAA 161

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G++VV+TDY+VEDKFE L   +    R RGVTAFLT+QEGCDKFCTFCVVPYTRG E+S
Sbjct: 162 GGEKVVETDYAVEDKFEALPQSERRQIRGRGVTAFLTVQEGCDKFCTFCVVPYTRGAEVS 221

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R  +Q+VDEA+ L D GV E+TLLGQNVNAW G+   G+      LL+ L++I G+ RLR
Sbjct: 222 RPFAQIVDEAKALSDAGVREVTLLGQNVNAWDGEDEAGKPIGLGGLLHRLADIPGIARLR 281

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           YTTSHPRDM   LI AH DL  LMPYLHLPVQSGSD ILK+MNRRHTA +Y +++D IR 
Sbjct: 282 YTTSHPRDMDAELIAAHRDLLSLMPYLHLPVQSGSDSILKAMNRRHTAEDYLRVLDTIRE 341

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
            RPDIA+S DFIVGFPGETD DF ATM LV ++ YA AF+FKYSPR GTPG+ M   ++E
Sbjct: 342 ARPDIALSGDFIVGFPGETDADFEATMRLVREVRYASAFTFKYSPRPGTPGAEMDGHIEE 401

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
            VK  RL  L   LRE Q  F ++ VG+ + VLIEK G+   ++ GRSP+LQ VVL    
Sbjct: 402 AVKDTRLQALNALLREHQAEFAESLVGKSLSVLIEKPGRHPRQIAGRSPYLQPVVLPEGM 461

Query: 445 HNIGDIIKVRITDVKISTLYGE 466
             IGDI++ +IT    ++L  E
Sbjct: 462 GAIGDIVEAKITSTGPNSLLAE 483


>gi|304393798|ref|ZP_07375723.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Ahrensia sp. R2A130]
 gi|303293997|gb|EFL88372.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Ahrensia sp. R2A130]
          Length = 477

 Score =  553 bits (1425), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 268/441 (60%), Positives = 334/441 (75%), Gaps = 1/441 (0%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F+K++GCQMNVYDS RM D   + GY    +M+DADL++LNTCHIREKAAEKVYS L
Sbjct: 15  KKVFIKTWGCQMNVYDSTRMSDALEADGYAPTTTMEDADLVLLNTCHIREKAAEKVYSNL 74

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GRIR LK +R      L + V GCVAQAEG+EI+RR   V++VVGPQTY+RLPE++ R++
Sbjct: 75  GRIRQLKETRAGTDRPLTIGVTGCVAQAEGQEIIRRERAVDLVVGPQTYHRLPEIVTRSK 134

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G +V DT+Y+VEDKFE L++      + RGVTAFLT+QEGCDKFCTFCVVPYTRG E+S
Sbjct: 135 SGPQV-DTEYAVEDKFEHLALPKKRQVQARGVTAFLTVQEGCDKFCTFCVVPYTRGAEVS 193

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R L+Q++DEAR LID GV EITLLGQNVNAW G    G +     LL+ L+ + G+ RLR
Sbjct: 194 RPLAQILDEARALIDAGVREITLLGQNVNAWHGVDGTGRELGLGHLLHHLAALPGIARLR 253

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           Y TSHPRDM+D LI+AH DLD LMPYLHLPVQ+GSD+ILKSMNR HT+ +Y  II+R+R 
Sbjct: 254 YVTSHPRDMADDLIEAHRDLDCLMPYLHLPVQAGSDKILKSMNRGHTSADYLSIINRVRE 313

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
            RPDIAIS D IVGFPGETDDDF ATM++V +  YA  +SFKYS R GTPG+ M +QVDE
Sbjct: 314 ARPDIAISGDMIVGFPGETDDDFEATMEIVRQTNYAACYSFKYSMRPGTPGAEMTDQVDE 373

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
            VK ERL  LQ  L +QQ +FN AC+G+ I+VLIEK G+ + + +GRSPWLQSVV+    
Sbjct: 374 AVKTERLARLQALLSDQQKAFNAACIGKTIDVLIEKPGRTEDQWIGRSPWLQSVVMPRTL 433

Query: 445 HNIGDIIKVRITDVKISTLYG 465
             IGDI+ V +   + ++L G
Sbjct: 434 GAIGDIVSVDVIAAQANSLMG 454


>gi|118590489|ref|ZP_01547891.1| hypothetical protein SIAM614_02901 [Stappia aggregata IAM 12614]
 gi|118436952|gb|EAV43591.1| hypothetical protein SIAM614_02901 [Stappia aggregata IAM 12614]
          Length = 491

 Score =  553 bits (1425), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 268/445 (60%), Positives = 333/445 (74%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ FV++YGCQMNVYDS RM D+   +G+E  + ++DADL++LNTCHIREKAAEKVYS L
Sbjct: 31  RKVFVRTYGCQMNVYDSERMTDVLAPEGFEATDDLEDADLVILNTCHIREKAAEKVYSEL 90

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GRIR +K  R K G D++V VAGCVAQAEGEEI RR+PIV++VVGPQ+Y++LP LLE+AR
Sbjct: 91  GRIRKVKEERAKSGKDMMVGVAGCVAQAEGEEISRRAPIVDLVVGPQSYHQLPSLLEKAR 150

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G +VV+T++ ++ KF  LS        KR  +AFLT+QEGCDKFCTFCVVPYTRG E+S
Sbjct: 151 AGSKVVETEFDIDAKFNHLSERAEKQVLKRPPSAFLTVQEGCDKFCTFCVVPYTRGAEVS 210

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           RS+ Q+V EA ++   GV EITLLGQNVNA+ G   DG       LL  LSEI GL RLR
Sbjct: 211 RSVEQIVSEAERMAAVGVREITLLGQNVNAYHGASPDGAVWGLGRLLRRLSEIDGLDRLR 270

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           YTTSHPRDM D LI AH DL  LMPYLHLPVQSGSD+ILK+MNRRHT  EY ++IDRIR 
Sbjct: 271 YTTSHPRDMDDDLIAAHRDLKSLMPYLHLPVQSGSDKILKAMNRRHTRDEYFRLIDRIRE 330

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             PDIA+S DFIVGFPGE+D DF  TMDL+ ++GY  AFSFKYS R GTPG+ M +QV E
Sbjct: 331 AAPDIALSGDFIVGFPGESDQDFEDTMDLIRQVGYGSAFSFKYSSRPGTPGATMDDQVPE 390

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
           +VK+ RL  LQ  + EQQ +FN + +G   +VL+EK G+  G+LVG+SPWLQ V L++  
Sbjct: 391 DVKSARLAELQALVAEQQKAFNASRLGMTCDVLLEKTGRNPGQLVGKSPWLQPVQLDAPE 450

Query: 445 HNIGDIIKVRITDVKISTLYGELVV 469
             IG I  V I D+  ++L+G L+ 
Sbjct: 451 DLIGSIQAVEIVDIGSNSLFGRLIA 475


>gi|49475038|ref|YP_033079.1| hypothetical protein BH02260 [Bartonella henselae str. Houston-1]
 gi|81648272|sp|Q6G4V6|MIAB_BARHE RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|49237843|emb|CAF27038.1| hypothetical protein BH02260 [Bartonella henselae str. Houston-1]
          Length = 458

 Score =  553 bits (1424), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 261/447 (58%), Positives = 339/447 (75%), Gaps = 2/447 (0%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + P++ F+K+YGCQMNVYDS RM D   S+GY    + +DADLI++NTCHIREKAAEK+Y
Sbjct: 12  LAPKKVFIKTYGCQMNVYDSQRMTDSLSSKGYVATQTPNDADLILVNTCHIREKAAEKLY 71

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S LGR+R ++  R  +   L+V V GCVAQAEG EILRR+PIV++V+GPQ Y+RLP+LLE
Sbjct: 72  SDLGRLRVMRQERTPDK-PLMVGVTGCVAQAEGSEILRRAPIVDLVIGPQMYHRLPDLLE 130

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           + + GK++V T+Y+VEDKF  L   +    RKRGV+AFLT+QEGCDKFCTFCVVPYTRG 
Sbjct: 131 QTKQGKKIVATEYAVEDKFAHLPPHNKRAVRKRGVSAFLTVQEGCDKFCTFCVVPYTRGA 190

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           EISRS+ Q+ +EAR+LI+ GV EITLLGQNVN W G+ ++G+     DLLY L+++ GL 
Sbjct: 191 EISRSVEQITEEARQLIEAGVKEITLLGQNVNGWHGQNVNGKTWRLGDLLYHLAKLDGLK 250

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           RLRYTTSHPRDM D LI AH DLD+LMPYLHLPVQSGSDRILK+MNR+H +  Y Q+I++
Sbjct: 251 RLRYTTSHPRDMDDSLIAAHRDLDILMPYLHLPVQSGSDRILKAMNRQHKSIHYLQLIEK 310

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           IR+ RPDIA S DFIVGFPGETD+DF  T+ L+ ++ Y+ A+SFKYSPR GT G+ M   
Sbjct: 311 IRNARPDIAFSGDFIVGFPGETDEDFEETIKLIKQVEYSSAYSFKYSPRPGTVGATMKNH 370

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           V+E VK  RL  LQ  L EQQ +F  + +GQ  +VLIEK G+  G++VGRSPWL  VV++
Sbjct: 371 VEEAVKDARLQHLQVLLLEQQNAFLRSKIGQTTDVLIEKAGRHSGQMVGRSPWLLPVVVD 430

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
           ++  + G +I + I +   ++  GE+ 
Sbjct: 431 TQA-STGTVIPIHIKNTSSNSFVGEMT 456


>gi|188582640|ref|YP_001926085.1| (dimethylallyl)adenosine tRNA methylthiotransferase
           [Methylobacterium populi BJ001]
 gi|229890615|sp|B1ZJR5|MIAB_METPB RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|179346138|gb|ACB81550.1| RNA modification enzyme, MiaB family [Methylobacterium populi
           BJ001]
          Length = 446

 Score =  552 bits (1422), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 260/444 (58%), Positives = 335/444 (75%), Gaps = 6/444 (1%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ +VKSYGCQMN YD+ RM D+  ++GY    S+++AD++VLNTCHIREKAAEKVYS L
Sbjct: 2   KKAYVKSYGCQMNAYDAGRMADVLAAEGYSATESVEEADVVVLNTCHIREKAAEKVYSEL 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR+R LK  R + G D  +VVAGCVAQAEG EIL R+P V+VVVGPQ+Y+RLP+LL ++R
Sbjct: 62  GRLRVLKGERAESGQDTRIVVAGCVAQAEGREILSRAPAVDVVVGPQSYHRLPDLLRQSR 121

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
              RVVDT++ VEDKF+ L        R RGVT FLT+QEGCDKFC FCVVPYTRG E+S
Sbjct: 122 -ETRVVDTEFPVEDKFDHLPA-----RRNRGVTGFLTVQEGCDKFCAFCVVPYTRGAEVS 175

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           RS++ VV+EAR+L++ GV EITL+GQNVNA+ G G DG   T   L+ +LS + GL+RLR
Sbjct: 176 RSVAAVVEEARRLVEGGVREITLIGQNVNAYHGDGPDGAPATLGHLMDALSAVPGLLRLR 235

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           YTTSHP D +D LI AH    ++MPYLHLPVQSGSDRIL +MNRRHT   YR++I+RIR+
Sbjct: 236 YTTSHPNDFADDLIAAHAGNPLVMPYLHLPVQSGSDRILHAMNRRHTGDAYRRLIERIRT 295

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
            RPDIA+SSDFIVGFPGE+D DF  TM LV +IG+A AFSFKYSPR GTP +   + V E
Sbjct: 296 ARPDIALSSDFIVGFPGESDADFAETMRLVAEIGFAAAFSFKYSPRAGTPAAEREDAVPE 355

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
            VK ERL  LQ+ L +Q+ +FN A VG + E+L+EK G+  G++ G++P LQ+V  ++  
Sbjct: 356 AVKTERLAALQQLLDQQRHAFNAAAVGTVAEILVEKTGRHPGQVAGKTPHLQAVQFDAPA 415

Query: 445 HNIGDIIKVRITDVKISTLYGELV 468
             IG ++ VRIT    ++L+GE++
Sbjct: 416 STIGTLVPVRITRAGSNSLFGEVL 439


>gi|254501345|ref|ZP_05113496.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Labrenzia alexandrii
           DFL-11]
 gi|222437416|gb|EEE44095.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Labrenzia alexandrii
           DFL-11]
          Length = 486

 Score =  551 bits (1419), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 263/445 (59%), Positives = 334/445 (75%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ FV++YGCQMNVYDS RM D+   QGY     M++ADL++LNTCHIREKAAEKVYS L
Sbjct: 26  RKVFVRTYGCQMNVYDSERMTDVLAPQGYSTTADMEEADLVILNTCHIREKAAEKVYSEL 85

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GRIR +K  R K G D++V VAGCVAQAEGEEI RR+PIV++VVGPQ+Y++LP LL++AR
Sbjct: 86  GRIRKVKEERAKAGKDMMVGVAGCVAQAEGEEISRRAPIVDMVVGPQSYHQLPSLLDKAR 145

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G++VV+T++ ++ KF+ LS        KR   AFLT+QEGCDKFCTFCVVPYTRG E+S
Sbjct: 146 QGQKVVETEFDIDAKFDHLSARAEKPIMKRPPAAFLTVQEGCDKFCTFCVVPYTRGAEVS 205

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           RS+ Q+V EA+++  +GV E+TLLGQNVNA+ G+  DG       LL  LSEI GL RLR
Sbjct: 206 RSVEQIVTEAQRMAASGVREVTLLGQNVNAYHGEAADGSTWGLGKLLRRLSEIDGLDRLR 265

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           YTTSHPRDM D LI+AH +L  LMPYLHLPVQSGSD+ILK+MNR+HT  EY ++IDRIR 
Sbjct: 266 YTTSHPRDMDDDLIEAHRELKSLMPYLHLPVQSGSDKILKAMNRKHTRDEYFRLIDRIRV 325

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             PDIA+S DFI+GFPGETD DF  TMDL+ ++ Y  AFSFKYS R GTPG+ M +QV E
Sbjct: 326 AAPDIALSGDFIIGFPGETDQDFEDTMDLIRRVEYGSAFSFKYSQRPGTPGATMEDQVPE 385

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
           +VK+ RL  LQ  L EQQ +FN +  G   +VL+EK G+  G+LVG+SPWLQ V L++  
Sbjct: 386 DVKSVRLQELQALLSEQQKAFNASRKGMTCDVLLEKKGRNPGQLVGKSPWLQPVQLDAPE 445

Query: 445 HNIGDIIKVRITDVKISTLYGELVV 469
             IG +  V I ++  ++L+G L+ 
Sbjct: 446 SMIGSVQAVEIVEIGSNSLFGRLIA 470


>gi|158421632|ref|YP_001522924.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Azorhizobium
           caulinodans ORS 571]
 gi|229890445|sp|A8IG00|MIAB_AZOC5 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|158328521|dbj|BAF86006.1| conserved hypothetical protein [Azorhizobium caulinodans ORS 571]
          Length = 464

 Score =  551 bits (1419), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 261/445 (58%), Positives = 330/445 (74%), Gaps = 3/445 (0%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P++ +VKS+GCQMNVYDS RM D    +GY       DADL++LNTCHIREKAAEKVYS 
Sbjct: 4   PRKLYVKSFGCQMNVYDSQRMADALAKEGYVETQDPADADLVILNTCHIREKAAEKVYSE 63

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR+R  K      G D  + VAGCVAQAEG EI++R+P+V++VVGPQ+Y+RLPE+L R 
Sbjct: 64  LGRLRKAKQD---AGSDTTIAVAGCVAQAEGAEIMKRAPVVDLVVGPQSYHRLPEMLARV 120

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           R GKRVVDT++  EDKF+ L        +KRG TAF+T+QEGCDKFCTFCVVPYTRG E+
Sbjct: 121 RDGKRVVDTEFPAEDKFDHLPAPSAAATKKRGPTAFVTVQEGCDKFCTFCVVPYTRGAEV 180

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SRS+S++V EAR L+D GV EITL+GQNVNA+ G+G DG       LL  L+ I GL RL
Sbjct: 181 SRSVSKIVGEARALVDQGVREITLIGQNVNAFHGEGPDGRTWGLGRLLEELAGINGLARL 240

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           RYTTSHPRDM D LI AH DL  LMPYLHLPVQSGSDRIL +MNR+H    Y +IID++R
Sbjct: 241 RYTTSHPRDMDDGLIAAHRDLPQLMPYLHLPVQSGSDRILAAMNRKHGREIYFEIIDKLR 300

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           + RPDIA+SSDFIVGFPGET+ DF  T+DL  ++G+A A+SFKYS R GTP +    Q+ 
Sbjct: 301 AARPDIALSSDFIVGFPGETEADFEDTLDLARRVGFASAYSFKYSIRPGTPAAEHDHQLS 360

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
           E VK+ERL  L + L   + +F+ AC+G+  ++L+EK G+  G+L+GRSP+LQSVV+ + 
Sbjct: 361 EEVKSERLARLHQVLEASKTAFDRACMGRRFDILLEKPGRLPGQLIGRSPYLQSVVVTAP 420

Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468
              IGD + V ITDV  ++L G++V
Sbjct: 421 GAGIGDFVTVDITDVGPNSLAGQVV 445


>gi|49473881|ref|YP_031923.1| hypothetical protein BQ02140 [Bartonella quintana str. Toulouse]
 gi|81647252|sp|Q6G0N1|MIAB_BARQU RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|49239384|emb|CAF25717.1| hypothetical protein BQ02140 [Bartonella quintana str. Toulouse]
          Length = 458

 Score =  551 bits (1419), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 261/448 (58%), Positives = 339/448 (75%), Gaps = 2/448 (0%)

Query: 21  CIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKV 80
            +VP++ F+K+YGCQMNVYDS RM D   S+GY    + +DADLI+LNTCHIREKAAEK+
Sbjct: 11  SVVPKKVFIKTYGCQMNVYDSQRMTDSLSSKGYVATQTPNDADLILLNTCHIREKAAEKL 70

Query: 81  YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140
           YS LGR+R ++ +R  +   L++ V GCVAQAEG EILRR+P+V++V+GPQ Y+RLP+LL
Sbjct: 71  YSDLGRLRVMRQARTLDK-PLMIGVTGCVAQAEGNEILRRAPMVDLVIGPQMYHRLPDLL 129

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           E+ + GK++V+TDY VEDKF  L   +    RKRGV+AFLT+QEGCDKFCTFCVVPYTRG
Sbjct: 130 EQTKQGKKIVETDYPVEDKFAHLPPHNKRAVRKRGVSAFLTVQEGCDKFCTFCVVPYTRG 189

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            EISRS+ Q+ +EAR+LI+ GV EITLLGQNVN W G+  +G+     DLLY L+++ GL
Sbjct: 190 AEISRSVEQITEEARQLIEAGVKEITLLGQNVNGWHGQIANGKTWRLGDLLYHLAKLDGL 249

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            RLRYTTSHPRDM D LI AH DLD+LMPYLHLPVQSGSDRILK+MNR+H +  Y  +I+
Sbjct: 250 KRLRYTTSHPRDMDDSLIAAHRDLDILMPYLHLPVQSGSDRILKAMNRQHKSIHYLHLIE 309

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           +IR+ RPDIA S DFIVGFPGETD+DF  T+ L+ ++ Y+ A+SFKYSPR GT G+ M  
Sbjct: 310 KIRTARPDIAFSGDFIVGFPGETDEDFEETVKLIKQVQYSSAYSFKYSPRPGTVGATMKN 369

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440
            VDE VK  RL  LQ  L EQQ +F  + +GQ  +VLIEK G+  G++VGRSPWL  VV+
Sbjct: 370 HVDEAVKDARLQHLQVLLLEQQNAFLRSKIGQTTDVLIEKVGRHSGQMVGRSPWLLPVVV 429

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
           +++  + G ++ + I +   ++  GE+ 
Sbjct: 430 DTEA-STGTVMSIHIKNAGSNSFVGEIA 456


>gi|154245754|ref|YP_001416712.1| RNA modification protein [Xanthobacter autotrophicus Py2]
 gi|154159839|gb|ABS67055.1| RNA modification enzyme, MiaB family [Xanthobacter autotrophicus
           Py2]
          Length = 496

 Score =  550 bits (1416), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 252/442 (57%), Positives = 333/442 (75%), Gaps = 3/442 (0%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P++ +VKS+GCQMNVYDS RM D    +G+       +ADL++LNTCHIREKAAEKVYS 
Sbjct: 30  PRKLYVKSFGCQMNVYDSHRMADTLAREGFVETQDPAEADLVILNTCHIREKAAEKVYSE 89

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR+R  K    + G D ++ VAGCVAQAEG EI+RR+P+V++VVGPQ+Y+RLPELL  A
Sbjct: 90  LGRLRKQKQ---EAGSDTMIAVAGCVAQAEGAEIMRRAPVVDLVVGPQSYHRLPELLAEA 146

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           + GKRVVDT++  EDKF+ L        R RG  AF+T+QEGCDKFCTFCVVPYTRG E+
Sbjct: 147 KAGKRVVDTEFPAEDKFDHLPAPTRAATRSRGPAAFVTVQEGCDKFCTFCVVPYTRGAEV 206

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR +++++DEA +L+D GV EI+L+GQNVNA+ G G DG   + + L+  ++ + GL RL
Sbjct: 207 SRPVAKIMDEAARLVDQGVREISLIGQNVNAFHGAGPDGTTWSLARLMEHMARLDGLARL 266

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           RYTTSHPRDM D LI AH DL  LMPYLHLPVQSGSDRIL +MNR+H   ++  II+++R
Sbjct: 267 RYTTSHPRDMDDDLIAAHRDLPQLMPYLHLPVQSGSDRILAAMNRKHGRDDFFAIIEKMR 326

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
             RPD+A+SSDFIVGFPGE++ DF  T+DLV ++G+A A+SFKYSPR GTP ++   QV 
Sbjct: 327 QARPDMALSSDFIVGFPGESEKDFEDTLDLVRRVGFASAYSFKYSPRPGTPAADHDAQVP 386

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
           E VKAERL  LQ+ L   + +F+++C G+  ++L+EK G++ G+L+GRSP+LQSVV+N  
Sbjct: 387 EEVKAERLAELQRLLEASKAAFDESCRGRTFDILLEKPGRQAGQLIGRSPYLQSVVVNDP 446

Query: 444 NHNIGDIIKVRITDVKISTLYG 465
              IGD++ V ITDV  ++L G
Sbjct: 447 PAAIGDLLTVTITDVGPNSLAG 468


>gi|229891225|sp|A7IGB2|MIAB_XANP2 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
          Length = 470

 Score =  549 bits (1415), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 252/442 (57%), Positives = 333/442 (75%), Gaps = 3/442 (0%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P++ +VKS+GCQMNVYDS RM D    +G+       +ADL++LNTCHIREKAAEKVYS 
Sbjct: 4   PRKLYVKSFGCQMNVYDSHRMADTLAREGFVETQDPAEADLVILNTCHIREKAAEKVYSE 63

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR+R  K    + G D ++ VAGCVAQAEG EI+RR+P+V++VVGPQ+Y+RLPELL  A
Sbjct: 64  LGRLRKQKQ---EAGSDTMIAVAGCVAQAEGAEIMRRAPVVDLVVGPQSYHRLPELLAEA 120

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           + GKRVVDT++  EDKF+ L        R RG  AF+T+QEGCDKFCTFCVVPYTRG E+
Sbjct: 121 KAGKRVVDTEFPAEDKFDHLPAPTRAATRSRGPAAFVTVQEGCDKFCTFCVVPYTRGAEV 180

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR +++++DEA +L+D GV EI+L+GQNVNA+ G G DG   + + L+  ++ + GL RL
Sbjct: 181 SRPVAKIMDEAARLVDQGVREISLIGQNVNAFHGAGPDGTTWSLARLMEHMARLDGLARL 240

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           RYTTSHPRDM D LI AH DL  LMPYLHLPVQSGSDRIL +MNR+H   ++  II+++R
Sbjct: 241 RYTTSHPRDMDDDLIAAHRDLPQLMPYLHLPVQSGSDRILAAMNRKHGRDDFFAIIEKMR 300

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
             RPD+A+SSDFIVGFPGE++ DF  T+DLV ++G+A A+SFKYSPR GTP ++   QV 
Sbjct: 301 QARPDMALSSDFIVGFPGESEKDFEDTLDLVRRVGFASAYSFKYSPRPGTPAADHDAQVP 360

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
           E VKAERL  LQ+ L   + +F+++C G+  ++L+EK G++ G+L+GRSP+LQSVV+N  
Sbjct: 361 EEVKAERLAELQRLLEASKAAFDESCRGRTFDILLEKPGRQAGQLIGRSPYLQSVVVNDP 420

Query: 444 NHNIGDIIKVRITDVKISTLYG 465
              IGD++ V ITDV  ++L G
Sbjct: 421 PAAIGDLLTVTITDVGPNSLAG 442


>gi|218510260|ref|ZP_03508138.1| putative 2-methylthioadenine synthetase (miaB-like) protein
           [Rhizobium etli Brasil 5]
          Length = 450

 Score =  548 bits (1412), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 261/399 (65%), Positives = 319/399 (79%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F+K+YGCQMNVYDS RM D     GYE    M++ADL++LNTCHIREKAAEKVYS L
Sbjct: 35  RKVFIKTYGCQMNVYDSTRMSDALARDGYEPTEDMEEADLVLLNTCHIREKAAEKVYSAL 94

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR+R +K  +  +G ++++ V GCVAQAEGEEILRR+P V+VV+GPQTY+RLPE L RA+
Sbjct: 95  GRLREMKKKKAADGREMMIGVTGCVAQAEGEEILRRAPAVDVVIGPQTYHRLPEALRRAQ 154

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G+RVVDT+Y++EDKFE L I +    R RGVTAFLT+QEGCDKFCTFCVVPYTRG E+S
Sbjct: 155 QGQRVVDTEYAIEDKFEHLPIAESRKIRARGVTAFLTVQEGCDKFCTFCVVPYTRGSEVS 214

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R +SQ+V+EA KL++ GV EITLLGQNVNAW G G  GE  +  DLLY L+EI GL RLR
Sbjct: 215 RPVSQIVEEAEKLVEAGVREITLLGQNVNAWHGAGPRGEAWSLGDLLYRLAEIPGLARLR 274

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           YTTSHPRDM D LI+AH DL  LMPYLHLPVQSGSDRILK+MNRRHTA EY  +I+RIR+
Sbjct: 275 YTTSHPRDMDDRLIEAHRDLRALMPYLHLPVQSGSDRILKAMNRRHTAAEYFSLIERIRT 334

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           VRPDIA+S DFI GFPGETD DF  T+ LV+++ YAQAFSFKYS R GTPG+ + +QV E
Sbjct: 335 VRPDIALSGDFITGFPGETDADFEDTLRLVEEVRYAQAFSFKYSTRPGTPGAELKDQVPE 394

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK 423
            +KAERL  LQ  L +QQ  F ++C+G+ I++L+EK G+
Sbjct: 395 EIKAERLERLQALLLKQQQEFAESCIGKEIDLLLEKPGR 433


>gi|163852619|ref|YP_001640662.1| RNA modification protein [Methylobacterium extorquens PA1]
 gi|229890613|sp|A9VYZ9|MIAB_METEP RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|163664224|gb|ABY31591.1| RNA modification enzyme, MiaB family [Methylobacterium extorquens
           PA1]
          Length = 446

 Score =  547 bits (1410), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 258/444 (58%), Positives = 331/444 (74%), Gaps = 6/444 (1%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ +VKSYGCQMN YD+ RM D+  ++GY   +++++AD++VLNTCHIREKAAEKVYS L
Sbjct: 2   KKAYVKSYGCQMNAYDAGRMADVLAAEGYSATDTVEEADVVVLNTCHIREKAAEKVYSEL 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR+R LK  R + G D  +VVAGCVAQAEG EIL R+P V+VVVGPQ+Y+RLP+LL ++R
Sbjct: 62  GRLRVLKGERAESGHDTRIVVAGCVAQAEGREILSRAPAVDVVVGPQSYHRLPDLLRQSR 121

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
              RVVDT++  EDKF+ L        R RGVT FLT+QEGCDKFC FCVVPYTRG E+S
Sbjct: 122 -ETRVVDTEFPAEDKFDHLPA-----RRNRGVTGFLTVQEGCDKFCAFCVVPYTRGAEVS 175

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           RS++ VVDEAR+L++ GV EITL+GQNVNA+ G G DG   T   L+ +LS + GL+RLR
Sbjct: 176 RSVAAVVDEARRLVEGGVREITLIGQNVNAYHGNGPDGAPATLGHLMDALSAVPGLLRLR 235

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           YTTSHP D +D LI AH    ++MPYLHLPVQSGSDRIL +MNRRHT   YR++I+RIR+
Sbjct: 236 YTTSHPNDFADDLIAAHATNPLVMPYLHLPVQSGSDRILHAMNRRHTGDAYRRLIERIRN 295

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
            RPDIA+SSDFIVGFPGETD DF  TM LV  IG++ AFSFKYSPR GTP +   + V E
Sbjct: 296 ARPDIALSSDFIVGFPGETDADFAETMRLVSDIGFSAAFSFKYSPRAGTPAAEREDAVPE 355

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
            VK ERL  LQ  L  Q+ ++N A VG + E+L+EK G+  G++ G++P LQ+V  ++  
Sbjct: 356 AVKTERLAALQDLLDRQRHAYNAASVGTLTEILVEKTGRHPGQVAGKTPHLQAVQFDAPA 415

Query: 445 HNIGDIIKVRITDVKISTLYGELV 468
             IG ++ VRIT    ++L+GE +
Sbjct: 416 STIGTVVPVRITRAGSNSLFGETL 439


>gi|319898348|ref|YP_004158441.1| bifunctional enzyme [Bartonella clarridgeiae 73]
 gi|319402312|emb|CBI75851.1| bifunctional enzyme [Bartonella clarridgeiae 73]
          Length = 460

 Score =  547 bits (1409), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 259/443 (58%), Positives = 335/443 (75%), Gaps = 2/443 (0%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P++ F+K+YGCQMNVYDS RM D   +QGY    + +DADLI++NTCHIREKAAEK+YS 
Sbjct: 15  PKKVFIKTYGCQMNVYDSQRMNDSLSAQGYITTQTPNDADLILINTCHIREKAAEKLYSD 74

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR++ ++  R  +   L++ V GCVAQAEG EILRR+P V+ ++GPQ Y+RLPELL++ 
Sbjct: 75  LGRLQIIRQERTNDK-PLMIGVTGCVAQAEGNEILRRAPTVDFIIGPQMYHRLPELLKQV 133

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             GK+VV+T+Y+VEDKF  L   +    ++RG++AFLT+QEGCDKFCTFCVVPYTRG EI
Sbjct: 134 TQGKKVVETNYAVEDKFTHLPPHNKRAVQQRGISAFLTVQEGCDKFCTFCVVPYTRGAEI 193

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SRS+ Q+ +EA +LI+ GV EITLLGQNVNAW G+ +DG+     DLL+ L++I GL RL
Sbjct: 194 SRSVEQITNEAHQLIEAGVKEITLLGQNVNAWHGQSIDGKTWRLGDLLHHLAKIDGLKRL 253

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           RYTTSHP DM D LI AH DLD+LMPYLHLPVQSGSDRILK+MNR+H +  Y  +ID+IR
Sbjct: 254 RYTTSHPCDMDDSLIAAHRDLDILMPYLHLPVQSGSDRILKAMNRQHKSIHYLHLIDKIR 313

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           + RPDIA S DFIVGFPGETD+DF  T+ L+ ++GY+ A+SFKYS R GT G+ M   VD
Sbjct: 314 AARPDIAFSGDFIVGFPGETDEDFEETIKLIKQVGYSSAYSFKYSSRPGTVGATMKNHVD 373

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
           E VK  RL  LQ  L +QQ  F  + +GQ  +VLIEK G+  G++VGRSPWL  VV+N++
Sbjct: 374 ETVKNARLQHLQTVLLDQQHIFLHSKIGQTTDVLIEKIGRHSGQMVGRSPWLLPVVVNTQ 433

Query: 444 NHNIGDIIKVRITDVKISTLYGE 466
             ++G IIK+RI +   ++  GE
Sbjct: 434 A-SVGTIIKIRIKNASSNSFVGE 455


>gi|154254048|ref|YP_001414872.1| RNA modification protein [Parvibaculum lavamentivorans DS-1]
 gi|229890586|sp|A7HZ82|MIAB_PARL1 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|154157998|gb|ABS65215.1| RNA modification enzyme, MiaB family [Parvibaculum lavamentivorans
           DS-1]
          Length = 467

 Score =  545 bits (1404), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 261/445 (58%), Positives = 335/445 (75%), Gaps = 2/445 (0%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ FVK+YGCQMNVYDS RM D+    GY  V++ +DAD+++LNTCHIREKAAEKVYS L
Sbjct: 15  KKIFVKTYGCQMNVYDSARMVDVMAPSGYTEVDAPEDADIVILNTCHIREKAAEKVYSEL 74

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER-A 143
           GR+R LK  +   G +LL+ VAGCVAQAEGEE+ RR+P+V++V+GPQTY+RLPE + R A
Sbjct: 75  GRLRELKKEKSGRGEELLIGVAGCVAQAEGEEMRRRAPVVDLVLGPQTYHRLPEYVARLA 134

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             G  +V+T++ V+DKF  L + +      RG TAFLTIQEGCDKFCTFCVVPYTRG E 
Sbjct: 135 NGGPGIVETEFPVDDKFASLPMAEKRKTLARGATAFLTIQEGCDKFCTFCVVPYTRGSEF 194

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR +++++DEAR L+D GV EITLLGQNVNAW G+   G   T   L+ +L+EI+GL RL
Sbjct: 195 SRPVARILDEARSLVDAGVREITLLGQNVNAWHGEDQAGRPATLGYLIRALAEIEGLARL 254

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           RYTTSHPRDM + LI AH D+  LMPYLHLPVQSGSDRIL +MNRRH A  Y +II RIR
Sbjct: 255 RYTTSHPRDMDEELIAAHRDVPALMPYLHLPVQSGSDRILAAMNRRHDADSYHRIIGRIR 314

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           + +PDIA+SSDFIVGFPGET+ DF AT+DL+  +G+AQA+SFKYSPR GTP +   +QV 
Sbjct: 315 AAKPDIALSSDFIVGFPGETEADFEATLDLIRTVGFAQAYSFKYSPRPGTPAATEEDQVP 374

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSV-VLNS 442
           E VK+ERL  LQ  L EQQ++FN  C G+ + VL ++ G+ + +LVGRSP+LQSV + ++
Sbjct: 375 EEVKSERLQRLQALLGEQQLAFNAGCAGRTMPVLFDRRGRGESQLVGRSPYLQSVHIDDA 434

Query: 443 KNHNIGDIIKVRITDVKISTLYGEL 467
             H  G ++ V I +   ++L G L
Sbjct: 435 PEHLFGSLVDVVIEEGHRNSLRGRL 459


>gi|121601992|ref|YP_989492.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bartonella bacilliformis
           KC583]
 gi|229890427|sp|A1UU39|MIAB_BARBK RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|120614169|gb|ABM44770.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bartonella bacilliformis
           KC583]
          Length = 458

 Score =  544 bits (1402), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 265/445 (59%), Positives = 342/445 (76%), Gaps = 2/445 (0%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           I  ++ F+K+YGCQMNVYDS RM D   +QGY    + +DADLI++NTCHIREKAAEK+Y
Sbjct: 12  IASKKVFIKTYGCQMNVYDSQRMNDSLSAQGYVTTQTPNDADLILVNTCHIREKAAEKLY 71

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S LGR+R ++  R  E   L++ V GCVAQAEG+EILRRSP V++VVGPQ Y+RLPELL+
Sbjct: 72  SDLGRLRMMRQKRTSEK-PLMIGVTGCVAQAEGDEILRRSPTVDLVVGPQMYHRLPELLQ 130

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           +A+ GK++V+T+Y+VEDKF  L   +    +KRGV+AFLT+QEGCDKFCTFCVVPYTRG 
Sbjct: 131 QAQQGKKIVETNYAVEDKFNHLPPHNKRAVQKRGVSAFLTVQEGCDKFCTFCVVPYTRGA 190

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           EISRS+ Q+ DEAR+LI+  V EITLLGQNVN W G+  DG+     DLLY L+++ GL 
Sbjct: 191 EISRSVEQITDEARQLIEADVKEITLLGQNVNGWHGQSTDGKTWRLGDLLYHLAKLDGLK 250

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           RLRYTTSHPRDM + LI AH +LD+LMPYLHLPVQSGSDRILK+MNR+H A +Y  +I++
Sbjct: 251 RLRYTTSHPRDMDESLIAAHRNLDILMPYLHLPVQSGSDRILKAMNRQHKAIDYLNLIEK 310

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           IR+ RPDIA S DFIVGFPGETDDDF  T+ L++++GY+ A+SFKYSPR GT G+ M  Q
Sbjct: 311 IRTARPDIAFSGDFIVGFPGETDDDFEETIKLIEQVGYSSAYSFKYSPRPGTLGATMKNQ 370

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           VDE VK +RL  LQ  L +QQ  F  + +GQ  +VLIEK G+  G++VGRSPWL  VV++
Sbjct: 371 VDEKVKNDRLQRLQALLLDQQHRFLRSKIGQTTDVLIEKDGRHPGQIVGRSPWLLPVVVD 430

Query: 442 SKNHNIGDIIKVRITDVKISTLYGE 466
           ++   IG ++ ++IT+   ++  GE
Sbjct: 431 TQA-PIGTVMAIQITNASSNSFVGE 454


>gi|240139952|ref|YP_002964429.1| tRNA modification enzyme MiaB, putative isopentenyl-adenosine A37
           tRNA methylthiolase [Methylobacterium extorquens AM1]
 gi|240009926|gb|ACS41152.1| tRNA modification enzyme MiaB, putative isopentenyl-adenosine A37
           tRNA methylthiolase [Methylobacterium extorquens AM1]
          Length = 446

 Score =  544 bits (1401), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 257/444 (57%), Positives = 330/444 (74%), Gaps = 6/444 (1%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ +VKSYGCQMN YD+ RM D+  ++GY   +++++AD++VLNTCHIREKAAEKVYS L
Sbjct: 2   KKAYVKSYGCQMNAYDAGRMADVLAAEGYSATDTVEEADVVVLNTCHIREKAAEKVYSEL 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR+R LK  R + G D  +VVAGCVAQAEG EIL R+P V+VVVGPQ+Y+RLP+LL ++R
Sbjct: 62  GRLRVLKGERAESGHDTRIVVAGCVAQAEGREILSRAPAVDVVVGPQSYHRLPDLLRQSR 121

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
              RVVDT++  EDKF+ L        R RGVT FLT+QEGCDKFC FCVVPYTRG E+S
Sbjct: 122 -ETRVVDTEFPAEDKFDHLPA-----RRNRGVTGFLTVQEGCDKFCAFCVVPYTRGAEVS 175

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           RS++ VVDEAR+L++ GV EITL+GQNVNA+ G G DG   T   L+ +LS + GL+RLR
Sbjct: 176 RSVAAVVDEARRLVEGGVREITLIGQNVNAYHGDGPDGAPATLGHLMDALSAVPGLLRLR 235

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           YTTSHP D +D LI AH    ++MPYLHLPVQSGSD IL +MNRRHT   YR++I+RIR+
Sbjct: 236 YTTSHPNDFADDLIAAHATNPLVMPYLHLPVQSGSDGILHAMNRRHTGDAYRRLIERIRN 295

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
            RPDIA+SSDFIVGFPGETD DF  TM LV  IG++ AFSFKYSPR GTP +   + V E
Sbjct: 296 ARPDIALSSDFIVGFPGETDADFAETMRLVSDIGFSAAFSFKYSPRAGTPAAEREDAVPE 355

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
            VK ERL  LQ  L  Q+ ++N A VG + E+L+EK G+  G++ G++P LQ+V  ++  
Sbjct: 356 AVKTERLAALQDLLDRQRHAYNAASVGTLTEILVEKTGRHPGQVAGKTPHLQAVQFDAPA 415

Query: 445 HNIGDIIKVRITDVKISTLYGELV 468
             IG ++ VRIT    ++L+GE +
Sbjct: 416 STIGTVVPVRITRAGSNSLFGETL 439


>gi|254562377|ref|YP_003069472.1| tRNA modification enzyme MiaB [Methylobacterium extorquens DM4]
 gi|254269655|emb|CAX25627.1| tRNA modification enzyme MiaB, putative isopentenyl-adenosine A37
           tRNA methylthiolase [Methylobacterium extorquens DM4]
          Length = 446

 Score =  542 bits (1396), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 256/440 (58%), Positives = 329/440 (74%), Gaps = 6/440 (1%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ +VKSYGCQMN YD+ RM D+  ++GY   +++++AD++VLNTCHIREKAAEKVYS L
Sbjct: 2   KKAYVKSYGCQMNAYDAGRMADVLAAEGYSATDTVEEADVVVLNTCHIREKAAEKVYSEL 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR+R LK  R + G D  +VVAGCVAQAEG EIL R+P V+VVVGPQ+Y+RLP+LL ++R
Sbjct: 62  GRLRVLKGERAESGQDTRIVVAGCVAQAEGREILSRAPAVDVVVGPQSYHRLPDLLRQSR 121

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
              RVVDT++  EDKF+ L        R RGVT FLT+QEGCDKFC FCVVPYTRG E+S
Sbjct: 122 -ETRVVDTEFPAEDKFDHLPA-----RRNRGVTGFLTVQEGCDKFCAFCVVPYTRGAEVS 175

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           RS++ VVDEAR+L++ GV EITL+GQNVNA+ G G DG   T   L+ +LS + GL+RLR
Sbjct: 176 RSVAAVVDEARRLVEGGVREITLIGQNVNAYHGDGPDGAPATLGHLMDALSAVPGLLRLR 235

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           YTTSHP D +D LI AH    ++MPYLHLPVQSGSDRIL++MNRRHT   YR++I+RIR+
Sbjct: 236 YTTSHPNDFADDLIAAHATNPLVMPYLHLPVQSGSDRILQAMNRRHTGDAYRRLIERIRN 295

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
            RPDIA+SSDFIVGFPGETD DF  TM LV  IG++ AFSFKYSPR GTP +   + V E
Sbjct: 296 ARPDIALSSDFIVGFPGETDADFAETMRLVSDIGFSAAFSFKYSPRAGTPAAEREDAVPE 355

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
            VK ERL  LQ  L  Q+ ++N A VG + E+L+EK G+  G++ G++P LQ+V  ++  
Sbjct: 356 AVKTERLAALQDLLDRQRHAYNAASVGTLTEILVEKTGRHPGQVAGKTPHLQAVQFDAPA 415

Query: 445 HNIGDIIKVRITDVKISTLY 464
             IG ++ VRIT    ++L+
Sbjct: 416 STIGTVVPVRITRAGSNSLF 435


>gi|85714185|ref|ZP_01045174.1| tRNA-i(6)A37 modification enzyme MiaB [Nitrobacter sp. Nb-311A]
 gi|85699311|gb|EAQ37179.1| tRNA-i(6)A37 modification enzyme MiaB [Nitrobacter sp. Nb-311A]
          Length = 478

 Score =  539 bits (1389), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 249/456 (54%), Positives = 335/456 (73%)

Query: 13  MVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHI 72
           M+ ++ +  + P++  +KSYGCQMNVYD+ RM D    +GY    S +DADL++LNTCHI
Sbjct: 1   MLIEMPESRMPPRKLHIKSYGCQMNVYDAQRMADALAPEGYVETASAEDADLVILNTCHI 60

Query: 73  REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT 132
           REKA+EKVYS LGR+R  K+   ++G  + VVVAGCVAQAEGEEI+RR+P+V+VVVGPQ+
Sbjct: 61  REKASEKVYSELGRLRAAKDQAARDGRGMSVVVAGCVAQAEGEEIIRRAPVVDVVVGPQS 120

Query: 133 YYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTF 192
           Y+ LPELL RA+   R ++T++ V DKF  L        R RG++AF+T+QEGCDKFCTF
Sbjct: 121 YHHLPELLARAKAAGRALETEFPVADKFGFLPQPSRQAIRARGISAFVTVQEGCDKFCTF 180

Query: 193 CVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLY 252
           CVVPYTRG E+SR ++++ ++ ++L DNGV EITL+GQNVNA+ G+G DG    F  LLY
Sbjct: 181 CVVPYTRGAEVSRPVAKIAEDVQRLADNGVREITLIGQNVNAYHGEGPDGRPWPFGKLLY 240

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
            L+EI G+VRLRY+TSHPRD+ D LI AH  LD LMP++HLPVQSGSDRIL +MNRRH+A
Sbjct: 241 RLAEIPGIVRLRYSTSHPRDVEDSLIDAHRHLDALMPFVHLPVQSGSDRILAAMNRRHSA 300

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
            +YR++IDR R  R DIA SSDFIVGFPGET++DF AT+ LV +IGYA A+SFKYSPR G
Sbjct: 301 SDYRRVIDRFRHARQDIAFSSDFIVGFPGETEEDFAATLALVGQIGYAAAYSFKYSPRPG 360

Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS 432
           TP + + E V       RL  LQK +  QQ +FN   +G+ I+VL E+ G++ G++ GR+
Sbjct: 361 TPAAELREAVSTADMDARLERLQKLIDSQQSAFNRTALGRTIDVLFERAGRKPGQIAGRT 420

Query: 433 PWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           P+LQ   + + +  IG ++ V +  ++  +L+G L 
Sbjct: 421 PYLQPAHVEASDAIIGQVLPVTVASLERYSLFGTLA 456


>gi|75674213|ref|YP_316634.1| tRNA-i(6)A37 modification enzyme MiaB [Nitrobacter winogradskyi
           Nb-255]
 gi|123745611|sp|Q3SMT7|MIAB_NITWN RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|74419083|gb|ABA03282.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Nitrobacter winogradskyi
           Nb-255]
          Length = 477

 Score =  538 bits (1385), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 250/447 (55%), Positives = 333/447 (74%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + P++  +KSYGCQMNVYD+ RM D    +GY    S +DADL++LNTCHIREKA+EKVY
Sbjct: 6   MPPRKLHIKSYGCQMNVYDAQRMADTLAVEGYVETTSAEDADLVILNTCHIREKASEKVY 65

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S LGR+R  K+   ++G  + +VVAGCVAQAEGEEI+RR+P+V+VVVGPQ+Y+ LP+LL 
Sbjct: 66  SELGRLRAAKDQAARDGRGMNIVVAGCVAQAEGEEIIRRAPMVDVVVGPQSYHHLPQLLA 125

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           RA+   R ++T++ V DKF  L        R RG++AF+T+QEGCDKFCTFCVVPYTRG 
Sbjct: 126 RAKTCGRALETEFPVADKFGFLPQPSRQAIRSRGISAFVTVQEGCDKFCTFCVVPYTRGA 185

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR +++VV++ R+L DNGV EITL+GQNVNA+ G+G DG    F  LLY L+ I G+V
Sbjct: 186 EASRPVAKVVEDVRRLADNGVREITLIGQNVNAYHGEGPDGRPWPFGKLLYRLAGIPGIV 245

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           RLRY+TSHPRD+ D LI AH DLD LMP++HLPVQSGSDRIL +MNRRHTA +YR++IDR
Sbjct: 246 RLRYSTSHPRDVEDTLIDAHRDLDALMPFVHLPVQSGSDRILAAMNRRHTADDYRRVIDR 305

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
            R  RPDIA SSDFIVGFPGET++DF AT+ LV +IGYA A+SFKYSPR GTP ++M E 
Sbjct: 306 FRQARPDIAFSSDFIVGFPGETEEDFAATLALVGQIGYAAAYSFKYSPRPGTPAADMQET 365

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           V      +RL+ LQ  +  QQ +FN   +G+ I+VL ++ G++ G++VGR+ +LQ   + 
Sbjct: 366 VSTADMDQRLVQLQNLIDSQQSAFNRTALGRTIDVLFDRAGRKPGQIVGRTAYLQPAHVE 425

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
           + +  IG ++ V +  ++  +L+G L 
Sbjct: 426 ASDAIIGQVLPVTVASLERYSLFGTLA 452


>gi|170747073|ref|YP_001753333.1| RNA modification protein [Methylobacterium radiotolerans JCM 2831]
 gi|229890617|sp|B1LWE8|MIAB_METRJ RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|170653595|gb|ACB22650.1| RNA modification enzyme, MiaB family [Methylobacterium
           radiotolerans JCM 2831]
          Length = 445

 Score =  537 bits (1384), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 253/444 (56%), Positives = 330/444 (74%), Gaps = 6/444 (1%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ FVKSYGCQMN YD+ RM D+  ++GY   ++++DAD++VLNTCHIREKAAEKVYS L
Sbjct: 2   KKAFVKSYGCQMNAYDAARMADVLGAEGYTATDTVEDADVVVLNTCHIREKAAEKVYSEL 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR+R LK  R  +G D  +VVAGCVAQAEG EI  R P V+VVVGPQ+Y+RLP+LL R+R
Sbjct: 62  GRLRVLKGERKAQGLDTRIVVAGCVAQAEGAEIQARQPAVDVVVGPQSYHRLPDLLARSR 121

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
             +RVVDT++ VEDKF+ L        R  G +AFLT+QEGCDKFC FCVVPYTRG E+S
Sbjct: 122 -ERRVVDTEFPVEDKFDHLP-----RRRTLGASAFLTVQEGCDKFCAFCVVPYTRGAEVS 175

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           RS++ V+ EA KL D GV EITL+GQNVNA+ G G DG     +DL+ ++++I G+ R+R
Sbjct: 176 RSVAAVLAEAEKLADGGVREITLIGQNVNAYHGDGPDGAPAGLADLVRAVAKIPGIARIR 235

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           YTTSHP D  D LI+AH ++  LMPYLHLPVQSGSDRIL +MNR+HT   YR++IDRIR+
Sbjct: 236 YTTSHPNDFDDALIRAHAEVPALMPYLHLPVQSGSDRILAAMNRKHTGDAYRRLIDRIRA 295

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
            RPDIA+SSDFIVGFPGETD DF  T+ LV  +G+  AFSFKYS R GTP ++  +QV E
Sbjct: 296 ARPDIALSSDFIVGFPGETDADFAETLRLVRDVGFESAFSFKYSTRPGTPAADRTDQVPE 355

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
            V A RL  LQ  L  Q+ ++  A  G++ +VL+EK G+  G++ G++P L +V  ++  
Sbjct: 356 AVMAARLAELQALLDSQRHAYQRAAAGRVFDVLVEKRGRHPGQVAGKTPHLLAVQFDAAP 415

Query: 445 HNIGDIIKVRITDVKISTLYGELV 468
           H+IG ++ VRIT+   ++L+GELV
Sbjct: 416 HHIGQVVPVRITEAGSNSLFGELV 439


>gi|229890681|sp|B7KVE0|MIAB_METC4 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
          Length = 446

 Score =  536 bits (1382), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 253/440 (57%), Positives = 328/440 (74%), Gaps = 6/440 (1%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ +VKSYGCQMN YD+ RM D+  ++GY   +++++AD++VLNTCHIREKAAEKVYS L
Sbjct: 2   KKAYVKSYGCQMNAYDAGRMADVLAAEGYSATDTVEEADVVVLNTCHIREKAAEKVYSEL 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR+R LK  R + G +  +VVAGCVAQAEG EIL R+P V+VVVGPQ+Y+RLP+LL ++R
Sbjct: 62  GRLRVLKGDRAESGQETRIVVAGCVAQAEGREILSRAPAVDVVVGPQSYHRLPDLLRQSR 121

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
              RVVDT++  EDKF+ L        R RGVT FLT+QEGCDKFC FCVVPYTRG E+S
Sbjct: 122 -ETRVVDTEFPAEDKFDHLPA-----RRNRGVTGFLTVQEGCDKFCAFCVVPYTRGAEVS 175

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           RS++ VV+EAR+L++ GV EITL+GQNVNA+ G G DG   T   L+ +LS + GL+RLR
Sbjct: 176 RSVAAVVEEARRLVEGGVREITLIGQNVNAYHGDGPDGAPATLGQLMDALSAVPGLLRLR 235

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           YTTSHP D +D LI AH    ++MPYLHLPVQSGSDRIL +MNRRHT   YR++I+RIR+
Sbjct: 236 YTTSHPNDFADDLIAAHATNPLVMPYLHLPVQSGSDRILHAMNRRHTGDAYRRLIERIRN 295

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
            RPDIA+SSDFIVGFPGETD DF  T+ LV  IG++ AFSFKYSPR GTP +   + V E
Sbjct: 296 ARPDIALSSDFIVGFPGETDADFAETLRLVSDIGFSAAFSFKYSPRAGTPAAEREDAVPE 355

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
            VK ERL  LQ  L  Q+ ++N A VG + E+L+EK G+  G++ G++P LQ+V  ++  
Sbjct: 356 AVKTERLAALQDLLDRQRHAYNAASVGTLTEILVEKTGRHPGQVAGKTPHLQAVQFDAPA 415

Query: 445 HNIGDIIKVRITDVKISTLY 464
             IG ++ VRIT    ++L+
Sbjct: 416 STIGTVVPVRITRAGSNSLF 435


>gi|218531460|ref|YP_002422276.1| (dimethylallyl)adenosine tRNA methylthiotransferase
           [Methylobacterium chloromethanicum CM4]
 gi|218523763|gb|ACK84348.1| RNA modification enzyme, MiaB family [Methylobacterium
           chloromethanicum CM4]
          Length = 462

 Score =  536 bits (1381), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 256/457 (56%), Positives = 333/457 (72%), Gaps = 11/457 (2%)

Query: 13  MVSQIVDQCIVP-----QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVL 67
           M   +   C +P     ++ +VKSYGCQMN YD+ RM D+  ++GY   +++++AD++VL
Sbjct: 1   MSGGLSASCRLPRDTILKKAYVKSYGCQMNAYDAGRMADVLAAEGYSATDTVEEADVVVL 60

Query: 68  NTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVV 127
           NTCHIREKAAEKVYS LGR+R LK  R + G +  +VVAGCVAQAEG EIL R+P V+VV
Sbjct: 61  NTCHIREKAAEKVYSELGRLRVLKGDRAESGQETRIVVAGCVAQAEGREILSRAPAVDVV 120

Query: 128 VGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCD 187
           VGPQ+Y+RLP+LL ++R   RVVDT++  EDKF+ L        R RGVT FLT+QEGCD
Sbjct: 121 VGPQSYHRLPDLLRQSR-ETRVVDTEFPAEDKFDHLPA-----RRNRGVTGFLTVQEGCD 174

Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTF 247
           KFC FCVVPYTRG E+SRS++ VV+EAR+L++ GV EITL+GQNVNA+ G G DG   T 
Sbjct: 175 KFCAFCVVPYTRGAEVSRSVAAVVEEARRLVEGGVREITLIGQNVNAYHGDGPDGAPATL 234

Query: 248 SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307
             L+ +LS + GL+RLRYTTSHP D +D LI AH    ++MPYLHLPVQSGSDRIL +MN
Sbjct: 235 GQLMDALSAVPGLLRLRYTTSHPNDFADDLIAAHATNPLVMPYLHLPVQSGSDRILHAMN 294

Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           RRHT   YR++I+RIR+ RPDIA+SSDFIVGFPGETD DF  T+ LV  IG++ AFSFKY
Sbjct: 295 RRHTGDAYRRLIERIRNARPDIALSSDFIVGFPGETDADFAETLRLVSDIGFSAAFSFKY 354

Query: 368 SPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK 427
           SPR GTP +   + V E VK ERL  LQ  L  Q+ ++N A VG + E+L+EK G+  G+
Sbjct: 355 SPRAGTPAAEREDAVPEAVKTERLAALQDLLDRQRHAYNAASVGTLTEILVEKTGRHPGQ 414

Query: 428 LVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLY 464
           + G++P LQ+V  ++    IG ++ VRIT    ++L+
Sbjct: 415 VAGKTPHLQAVQFDAPASTIGTVVPVRITRAGSNSLF 451


>gi|328545928|ref|YP_004306037.1| 2-methylthioadenine synthetase (MiaB-like) protein [polymorphum
           gilvum SL003B-26A1]
 gi|326415668|gb|ADZ72731.1| 2-methylthioadenine synthetase (MiaB-like) protein [Polymorphum
           gilvum SL003B-26A1]
          Length = 485

 Score =  535 bits (1379), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 254/444 (57%), Positives = 328/444 (73%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ FV++YGCQMNVYDS RM ++   QGY +  +++DADL++LNTCHIREKAAEKVYS L
Sbjct: 23  RKVFVRTYGCQMNVYDSGRMAEVLAPQGYSQTETLEDADLVILNTCHIREKAAEKVYSEL 82

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR+R +K+ R + G   L+ VAGCVAQAEGEEI RR+P+V++V GPQ+Y+RLP+LL RA 
Sbjct: 83  GRLRKIKDERARAGKPTLIGVAGCVAQAEGEEISRRAPVVDLVFGPQSYHRLPDLLVRAA 142

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G +VV+T++ +++KFE L+         R  +AFLT+QEGCDKFCTFCVVPYTRG E+S
Sbjct: 143 GGAKVVETEFDIDEKFEHLAEQSKRMPLARAASAFLTVQEGCDKFCTFCVVPYTRGAEVS 202

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R L Q++ EA  L   GV EITLLGQNVNAW G+G DG       LL  L+E+ GL RLR
Sbjct: 203 RPLGQILQEAEGLAAAGVREITLLGQNVNAWHGEGPDGRPWGLGRLLRRLAEVDGLDRLR 262

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           YTTSHPRDM D LI AH D+  LMPYLHLPVQSGSDRIL +MNR+H   +Y +++DRIR 
Sbjct: 263 YTTSHPRDMDDELIAAHRDMPELMPYLHLPVQSGSDRILAAMNRKHGRDDYFRLVDRIRE 322

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             P +A+S DFIVGFPGETD DF  TMDLV ++GYA  FSFKYS R GTPG+ M +Q+ E
Sbjct: 323 ASPGLALSGDFIVGFPGETDADFADTMDLVRRVGYASCFSFKYSQRPGTPGAAMADQLPE 382

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
            VK+ RL  LQ  L +QQ +FN + +G   +VL+EK G++ G+L G+SPWLQ+V +++ +
Sbjct: 383 AVKSTRLAELQTLLSDQQRAFNASRLGITCDVLLEKKGRQAGQLTGKSPWLQAVQVDAPD 442

Query: 445 HNIGDIIKVRITDVKISTLYGELV 468
             IG I  V I D+  ++L+G L 
Sbjct: 443 ALIGTIQPVEIVDIGANSLFGRLA 466


>gi|218682221|ref|ZP_03529822.1| putative 2-methylthioadenine synthetase (miaB-like) protein
           [Rhizobium etli CIAT 894]
          Length = 394

 Score =  535 bits (1377), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 250/371 (67%), Positives = 298/371 (80%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F+K+YGCQMNVYDS RM D     GYE    M++ADL++LNTCHIREKAAEKVYS L
Sbjct: 22  RKVFIKTYGCQMNVYDSTRMSDALARDGYEPTEDMEEADLVLLNTCHIREKAAEKVYSAL 81

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR+R +K  +  +G ++++ VAGCVAQAEGEEILRR+P V+VV+GPQTY+RLPE L +A+
Sbjct: 82  GRLREMKKKKAADGREMMIGVAGCVAQAEGEEILRRAPAVDVVIGPQTYHRLPEALRQAK 141

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G+RVVDT+Y++EDKFE L I +    R RGVTAFLT+QEGCDKFCTFCVVPYTRG E+S
Sbjct: 142 QGRRVVDTEYAIEDKFEHLPIAESRKIRARGVTAFLTVQEGCDKFCTFCVVPYTRGSEVS 201

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R +SQ+V+EA KL++ GV EITLLGQNVNAW G G  GE  +  DLLY L+EI GL RLR
Sbjct: 202 RPVSQIVEEAEKLVEGGVREITLLGQNVNAWHGAGSGGEAWSLGDLLYRLAEIPGLARLR 261

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           YTTSHPRDM D LI+AH DL  LMPYLHLPVQSGSDRILK+MNRRHTA EY  +I RIR+
Sbjct: 262 YTTSHPRDMDDRLIEAHRDLRALMPYLHLPVQSGSDRILKAMNRRHTAAEYLSLIARIRA 321

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           VRPDIA+S DFI GFPGETD DF  T+ LV ++ YAQAFSFKYS R GTPG+ + +QV E
Sbjct: 322 VRPDIALSGDFITGFPGETDADFEDTLRLVAEVRYAQAFSFKYSTRPGTPGAELKDQVPE 381

Query: 385 NVKAERLLCLQ 395
            +KAERL  LQ
Sbjct: 382 EIKAERLERLQ 392


>gi|319408022|emb|CBI81676.1| bifunctional enzyme [Bartonella schoenbuchensis R1]
          Length = 458

 Score =  534 bits (1375), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 259/448 (57%), Positives = 337/448 (75%), Gaps = 2/448 (0%)

Query: 21  CIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKV 80
            I PQ+ F+K+YGCQMN YDS RM D   ++GY    + +DADLI++NTCHIREKAAEK+
Sbjct: 11  SISPQKVFIKTYGCQMNTYDSQRMNDSLSAEGYVTTQTPNDADLILVNTCHIREKAAEKL 70

Query: 81  YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140
           YS LGR+R ++  R  +   L++ V GCVAQAEG+EILRR+P V++VVGPQ Y+RLPELL
Sbjct: 71  YSDLGRLRMIRQKRAPDK-PLIIGVTGCVAQAEGDEILRRAPTVDLVVGPQMYHRLPELL 129

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           ++A+ GK++V+T+Y+VEDKF  L   +    +KRGV+AFLTIQEGCDKFCTFCVVPYTRG
Sbjct: 130 KQAKQGKKIVETNYAVEDKFTHLPPHNKHAVQKRGVSAFLTIQEGCDKFCTFCVVPYTRG 189

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E SR + Q+  EA +LI+ GV EITLLGQNVN W G+  +G+     DLLY L+++ GL
Sbjct: 190 AETSRPVEQITHEAIQLIEAGVKEITLLGQNVNGWHGQSANGKTWRLGDLLYHLAKLDGL 249

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            RLRYTTSHPRDM D LI AH DLD+LMPYLHLPVQSGSDRILK+MNR+H +  Y ++I+
Sbjct: 250 KRLRYTTSHPRDMDDSLIAAHRDLDMLMPYLHLPVQSGSDRILKAMNRQHKSIHYLKLIE 309

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           +IR+ RPDIA S DFIVGFPGETD+DF  T+ L+ ++GY+ A+SFKYSPR GTPG+ M  
Sbjct: 310 KIRTARPDIAFSGDFIVGFPGETDEDFEETIKLIKQVGYSSAYSFKYSPRPGTPGATMKN 369

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440
            VDE VK  RL  LQ  L +QQ +F  + +GQ   +LIEK G+  G++VGRSPWL  VV+
Sbjct: 370 HVDETVKNSRLQRLQALLLDQQHTFLRSKIGQKTNILIEKSGRHLGQMVGRSPWLLPVVV 429

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
           +++  + G I+++ I +   ++  GE V
Sbjct: 430 DAQV-STGTIMEIHIKNASPNSFVGEKV 456


>gi|170741367|ref|YP_001770022.1| (dimethylallyl)adenosine tRNA methylthiotransferase
           [Methylobacterium sp. 4-46]
 gi|229890618|sp|B0UNY0|MIAB_METS4 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|168195641|gb|ACA17588.1| RNA modification enzyme, MiaB family [Methylobacterium sp. 4-46]
          Length = 447

 Score =  531 bits (1368), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 253/442 (57%), Positives = 328/442 (74%), Gaps = 6/442 (1%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ FVKSYGCQMNVYD+ RM D+   +G+    +M++AD+++LNTCHIREKAAEKVYS L
Sbjct: 2   KKAFVKSYGCQMNVYDAARMVDLLGREGFAETEAMEEADVVILNTCHIREKAAEKVYSEL 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR+R+LK  R   G +  +VVAGCVAQAEG EI+ R+P V+VVVGPQ+Y+RLPELL RAR
Sbjct: 62  GRVRDLKGERAGAGRETTIVVAGCVAQAEGREIIHRAPAVDVVVGPQSYHRLPELLARAR 121

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            GK VVDT++ ++DKF+ L        R  G +AFLT+QEGCDKFC FCVVPYTRG E+S
Sbjct: 122 DGK-VVDTEFPLDDKFDHLPP-----RRVAGPSAFLTVQEGCDKFCAFCVVPYTRGAEVS 175

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R +++++ EA +L   G  E+TL+GQNVNA+ G+G DG   +   L+  L+E+ G+ RLR
Sbjct: 176 RPVAKILAEAERLAAGGARELTLIGQNVNAFHGEGPDGRPWSLGRLMRRLAEVPGIARLR 235

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           YTTSHPRDM D LI AH D   +MPYLHLPVQSGSDRIL +MNRRH A  YR++IDRIR+
Sbjct: 236 YTTSHPRDMDDDLIAAHRDCPAVMPYLHLPVQSGSDRILAAMNRRHDADTYRRLIDRIRA 295

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
            RPDIA++SDFIVGFPGETD D   TM LV +IG++ AFSFKYSPR GTP +   + V E
Sbjct: 296 ARPDIALTSDFIVGFPGETDADHAETMRLVAEIGFSGAFSFKYSPRPGTPAAESADAVPE 355

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
            VK ERL  LQ  +  Q  +FN A +G+ +EVLIEK G+  G++ G+SP+LQ+V + ++ 
Sbjct: 356 AVKRERLAALQALIDGQARAFNLASLGRTVEVLIEKPGRHPGQVAGKSPYLQAVQIEAEP 415

Query: 445 HNIGDIIKVRITDVKISTLYGE 466
             IG I+ VR+T    ++L+GE
Sbjct: 416 AVIGTILPVRLTRAGSNSLFGE 437


>gi|220920281|ref|YP_002495582.1| (dimethylallyl)adenosine tRNA methylthiotransferase
           [Methylobacterium nodulans ORS 2060]
 gi|219944887|gb|ACL55279.1| RNA modification enzyme, MiaB family [Methylobacterium nodulans ORS
           2060]
          Length = 447

 Score =  531 bits (1368), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 252/442 (57%), Positives = 328/442 (74%), Gaps = 6/442 (1%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ FVKSYGCQMNVYD+ RM D+   +G+     +++AD++VLNTCHIREKAAEKVYS L
Sbjct: 2   KKAFVKSYGCQMNVYDAARMVDLLGREGFTETAVIEEADVVVLNTCHIREKAAEKVYSEL 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR+R+LK  R + G +  +VVAGCVAQAEG EI+ R+P V+VVVGPQ+Y+RLP+LL RAR
Sbjct: 62  GRVRDLKGERAEAGRETTIVVAGCVAQAEGREIIHRAPAVDVVVGPQSYHRLPDLLRRAR 121

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
             ++VVDT++ ++DKF+ L        R  GV++FLT+QEGCDKFC FCVVPYTRG E+S
Sbjct: 122 -AEKVVDTEFPIDDKFDHLPP-----RRIAGVSSFLTVQEGCDKFCAFCVVPYTRGAEVS 175

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R +++V+ EA +L   G  E+TL+GQNVNA+ G+G DG   +   LL  L+E+ G+ RLR
Sbjct: 176 RPVAKVLAEAERLAAGGARELTLIGQNVNAYHGEGPDGATWSLGRLLRRLAEVPGIARLR 235

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           YTTSHPRDM D LI AH D   LMPYLHLPVQSGSDR+L +MNR+H A  Y ++IDRIR+
Sbjct: 236 YTTSHPRDMDDDLIAAHRDCPALMPYLHLPVQSGSDRVLAAMNRKHDAETYLRLIDRIRT 295

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
            RPDIA+SSDFIVGFPGETD D  ATM LV ++G+A AFSFKYSPR GTP +   + V E
Sbjct: 296 ARPDIALSSDFIVGFPGETDADHAATMRLVAEVGFASAFSFKYSPRPGTPAAESADAVPE 355

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
            VK ERL  LQ  L EQ  +FN A +G+ +EVL EK G+  G++ G+SP+LQ+V + +  
Sbjct: 356 AVKRERLAELQALLEEQNRAFNRATIGRTVEVLFEKPGRHPGQVAGKSPYLQAVQIEADP 415

Query: 445 HNIGDIIKVRITDVKISTLYGE 466
             IG ++ VR+T    ++L+GE
Sbjct: 416 AVIGTVLPVRLTRPGSNSLFGE 437


>gi|323138528|ref|ZP_08073596.1| RNA modification enzyme, MiaB family [Methylocystis sp. ATCC 49242]
 gi|322396162|gb|EFX98695.1| RNA modification enzyme, MiaB family [Methylocystis sp. ATCC 49242]
          Length = 482

 Score =  527 bits (1357), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 252/459 (54%), Positives = 332/459 (72%)

Query: 10  VAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNT 69
           V++ V  I D      +  VKSYGCQMNVYD+ RM D+   +GY    + +DADL++LNT
Sbjct: 18  VSNAVETIEDVTAKGGKVLVKSYGCQMNVYDATRMADLLGREGYAETANEEDADLVILNT 77

Query: 70  CHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG 129
           CHIREKAAEK+YS LG++   K  R  +G ++ +VVAGCVAQAEGEE+L+R   V++VVG
Sbjct: 78  CHIREKAAEKIYSELGKLALTKRERDAQGREMKIVVAGCVAQAEGEEVLKRQRAVDLVVG 137

Query: 130 PQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKF 189
           PQ+Y+RLP+LL +A+ G+RV DT+++VEDKF  L        R RGV+AF+T+QEGCDKF
Sbjct: 138 PQSYHRLPDLLRQAKDGRRVTDTEFAVEDKFHALPDPSRAQIRARGVSAFVTVQEGCDKF 197

Query: 190 CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSD 249
           C+FCVVPYTRG E+SR ++ +V E R+LID GV EITL+GQNVNA+RG    G +   + 
Sbjct: 198 CSFCVVPYTRGAEVSRPVADIVAETRRLIDAGVREITLIGQNVNAYRGADDKGREWGLAR 257

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
           LL  L+++ G+ RLRYTTSHP DM+  LI AH  +  LMPY+HLPVQSGSDRILK+MNRR
Sbjct: 258 LLSHLADMDGVERLRYTTSHPVDMAQDLIDAHESIGKLMPYVHLPVQSGSDRILKTMNRR 317

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369
           HT  +Y  II R+R  RPD+A+SSDFIVGFPGETD DF  TM LV ++G+A +FSFKYSP
Sbjct: 318 HTGADYLDIITRLRKARPDVAMSSDFIVGFPGETDADFEETMALVREVGFASSFSFKYSP 377

Query: 370 RLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV 429
           R GTPG+   +Q+DE  K ERL  LQ  L EQ+ +FN A VG+ I+VL EK G+ +G++ 
Sbjct: 378 RPGTPGAERDDQIDEEAKRERLAALQALLEEQRQAFNTATVGREIDVLFEKPGRHEGQIA 437

Query: 430 GRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           G+SP++Q+V +      IG + +V I     ++L G L+
Sbjct: 438 GKSPYMQAVHVEGDPEMIGKVARVAIVAAGSNSLAGRLL 476


>gi|92115654|ref|YP_575383.1| tRNA-i(6)A37 modification enzyme MiaB [Nitrobacter hamburgensis
           X14]
 gi|123083888|sp|Q1QS74|MIAB_NITHX RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|91798548|gb|ABE60923.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Nitrobacter hamburgensis
           X14]
          Length = 473

 Score =  526 bits (1354), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 246/442 (55%), Positives = 330/442 (74%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P++  +KSYGCQMNVYD+ RM D   ++G+    S ++ADL++LNTCHIREKA+EKVYS 
Sbjct: 4   PRKLHIKSYGCQMNVYDAQRMVDTLAAEGFVETASAEEADLVILNTCHIREKASEKVYSE 63

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR+R  K+   ++G ++ VVVAGCVAQAEG+EI+RR+P+V+VVVGPQ+Y+ LP+LL RA
Sbjct: 64  LGRLRAAKDQAARDGREMSVVVAGCVAQAEGDEIIRRAPVVDVVVGPQSYHHLPQLLARA 123

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           +   R ++T++ VEDKF  L        R RG++AF+T+QEGCDKFCTFCVVPYTRG E+
Sbjct: 124 KADGRALETEFPVEDKFGFLPQPSRQAIRARGISAFVTVQEGCDKFCTFCVVPYTRGAEV 183

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR ++++V++ ++L DNGV EITL+GQNVNA+ G G DG    F  LL+ L++I G+VRL
Sbjct: 184 SRPVAKIVEDVQRLADNGVREITLIGQNVNAYHGDGPDGRPWPFGKLLHRLADIPGIVRL 243

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           RY+TSHPRD+ D LI+AH DL  LMP++HLPVQSGSDRIL++MNRRHTA +YR+++DR R
Sbjct: 244 RYSTSHPRDVEDSLIEAHRDLGALMPFVHLPVQSGSDRILEAMNRRHTADDYRRVVDRFR 303

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
            VR DIA SSDFIVGFPGET+ DF AT+ LV +IGYA A+SFKYSPR GTP + M E V 
Sbjct: 304 HVRQDIAFSSDFIVGFPGETEQDFTATLALVTQIGYAGAYSFKYSPRPGTPAAEMKETVS 363

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
                ERL+ LQ  +  QQ +FN A VG  ++VL E+  +  G++VGR+ +LQ   + + 
Sbjct: 364 TADMDERLVRLQNLIDSQQSAFNRAAVGTTVDVLFERAARNPGQIVGRTAYLQPAHVVAS 423

Query: 444 NHNIGDIIKVRITDVKISTLYG 465
              IG I+ V +  ++  +L G
Sbjct: 424 ADIIGQILPVTVASLERYSLLG 445


>gi|209966243|ref|YP_002299158.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Rhodospirillum
           centenum SW]
 gi|229890626|sp|B6IVM2|MIAB_RHOCS RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|209959709|gb|ACJ00346.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Rhodospirillum centenum
           SW]
          Length = 466

 Score =  525 bits (1352), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 249/447 (55%), Positives = 335/447 (74%), Gaps = 5/447 (1%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ ++K+YGCQMNVYDS RM D+    GYE  ++ D AD+++LNTCHIREKAAEKVYS L
Sbjct: 3   KKLYIKTYGCQMNVYDSGRMADVLAPLGYEPTDAPDGADMVILNTCHIREKAAEKVYSDL 62

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA- 143
           GR+R L+ +R   GG ++V V GCVAQAEG EI+ R+P V++V GPQTY++LPE++ RA 
Sbjct: 63  GRLRPLQAARAATGGRMIVAVGGCVAQAEGAEIMMRAPHVDMVFGPQTYHQLPEMVARAV 122

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           R    VV+TD+ VE KF+  S+ + G +   G +AFL++QEGCDKFCT+CVVPYTRG E 
Sbjct: 123 RGTGGVVNTDFPVESKFD--SLPEEGAS-PAGPSAFLSVQEGCDKFCTYCVVPYTRGAEF 179

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR  ++V+ EA +L+ +GV EITLLGQNVNA+ G G DG       L+ +L+EI GL R+
Sbjct: 180 SRPAARVLAEAARLVADGVAEITLLGQNVNAYHGDGPDGTTWGLGRLVRNLAEIDGLARI 239

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           RYTTSHP DM   LI AH ++  LMP++HLPVQSG+DRIL++MNR+HTA +YR++++R+R
Sbjct: 240 RYTTSHPNDMDAELIAAHAEVPQLMPFVHLPVQSGNDRILQAMNRKHTADDYRRVVERMR 299

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM-LEQV 382
           + RPD+A+SSDFIVGFPGETD +F  T+ LV +IGYAQA+SFKYS R GTP + M   QV
Sbjct: 300 AARPDLALSSDFIVGFPGETDQEFADTLRLVTEIGYAQAYSFKYSARPGTPAAAMDGRQV 359

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
            E+VKAERL  LQ+ L  QQ +FN ACVG++  VL ++ GK+ G+L+GR PW+Q+V   +
Sbjct: 360 PESVKAERLEALQQLLTAQQTAFNTACVGRVQPVLFDRRGKKPGQLLGRGPWMQAVHAEA 419

Query: 443 KNHNIGDIIKVRITDVKISTLYGELVV 469
               +G I++VRI D   ++L G +VV
Sbjct: 420 PERLLGRIVEVRIADAHANSLSGTVVV 446


>gi|146337215|ref|YP_001202263.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bradyrhizobium
           sp. ORS278]
 gi|229890450|sp|A4YJD7|MIAB_BRASO RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|146190021|emb|CAL74013.1| Conserved hypothetical protein; putative MiaB-like tRNA modifying
           enzyme [Bradyrhizobium sp. ORS278]
          Length = 467

 Score =  523 bits (1348), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 242/446 (54%), Positives = 327/446 (73%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P++  +KSYGCQMNVYD+ RM D   ++G+       DADL++LNTCHIREKA+EKVYS 
Sbjct: 4   PRKLHIKSYGCQMNVYDAQRMVDTLGAEGFVETADAGDADLVILNTCHIREKASEKVYSE 63

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR+R  K    + G  + + VAGCVAQAEG EI+ R+P V+VVVGPQ+Y+ LP+LL +A
Sbjct: 64  LGRLRVAKEEAARSGRAMQIAVAGCVAQAEGVEIISRAPTVDVVVGPQSYHHLPQLLAQA 123

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             G+R ++T++  EDKF  L+       R RGV+AF+T+QEGCDKFCTFCVVPYTRG E+
Sbjct: 124 SRGERAIETEFPAEDKFGFLAKPSREAIRARGVSAFVTVQEGCDKFCTFCVVPYTRGAEM 183

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR ++++VD+  +L D+GV EITL+GQNVNA+ G+G DG   T   LLY ++EI G+ R+
Sbjct: 184 SRPVARIVDDVMQLTDSGVREITLIGQNVNAYHGEGPDGRTWTLGRLLYRIAEIPGVARI 243

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           RY+TSHP D+ D LI AH DL  +MP++HLPVQSGSDRIL +MNR+H+A +YR+++DR R
Sbjct: 244 RYSTSHPNDVDDGLIAAHRDLTAVMPFVHLPVQSGSDRILAAMNRKHSAADYRRVVDRFR 303

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
             R DIA SSDFIVGFPGET++DFRAT+ L+D+IGYA A+SFKYSPR GTP ++M E V 
Sbjct: 304 GARDDIAFSSDFIVGFPGETEEDFRATLALIDQIGYAAAYSFKYSPRPGTPAADMQEMVS 363

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
                ERL  LQ  +  QQ +FN A +G +++VL E+  ++ G+LVGR+ +LQ   + + 
Sbjct: 364 ATEMDERLERLQSLIDSQQAAFNKAAIGSVVDVLFEREARKPGQLVGRTAYLQPAHVMAS 423

Query: 444 NHNIGDIIKVRITDVKISTLYGELVV 469
           +  IG ++ VRI  ++  +L GELV 
Sbjct: 424 SDIIGQVLPVRIDSLERYSLLGELVA 449


>gi|91974724|ref|YP_567383.1| tRNA-i(6)A37 modification enzyme MiaB [Rhodopseudomonas palustris
           BisB5]
 gi|123763150|sp|Q13EK7|MIAB_RHOPS RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|91681180|gb|ABE37482.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Rhodopseudomonas
           palustris BisB5]
          Length = 473

 Score =  523 bits (1347), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 247/456 (54%), Positives = 331/456 (72%), Gaps = 10/456 (2%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P++  +KSYGCQMNVYD+ RM D+   +G+    ++DDADL++LNTCHIREKA+EKVYS 
Sbjct: 4   PRKLHIKSYGCQMNVYDAQRMVDVLAPEGFVETATVDDADLVILNTCHIREKASEKVYSE 63

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR+R  ++     G  + + VAGCVAQAEGEEI+RR+P+V+VVVGPQ+Y+ LP+LL RA
Sbjct: 64  LGRLRLARDEAASSGRRMQIAVAGCVAQAEGEEIVRRAPVVDVVVGPQSYHHLPQLLARA 123

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
               R ++T++ VEDKF  L        R RG++AF+T+QEGCDKFCTFCVVPYTRG E+
Sbjct: 124 DQAGRALETEFPVEDKFGFLPQPRPETIRARGISAFVTVQEGCDKFCTFCVVPYTRGAEV 183

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR +S ++D+ ++L DNGV EITL+GQNVNA+ G+G D    T   LL  L+ + G+VRL
Sbjct: 184 SRPVSAIIDDVKRLADNGVREITLIGQNVNAYHGEGPDSRAWTLGRLLRRLAAVPGIVRL 243

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           RY+TSHP D+ D LI+AH DLD LMP++HLPVQSGSD IL +MNR+HTA +YR++IDR R
Sbjct: 244 RYSTSHPNDVDDELIEAHRDLDALMPFVHLPVQSGSDPILAAMNRKHTAADYRRVIDRFR 303

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           +VRP IA SSDFIVGFPGET+ DF AT+ LV +IGYA A+SFKYSPR GTP ++M E V 
Sbjct: 304 AVRPQIAFSSDFIVGFPGETEADFAATLALVTQIGYAGAYSFKYSPRPGTPAADMQEMVP 363

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL--- 440
             V  ERL  LQ+ +  QQ +FN A +GQ ++VL E+ G++ G++VGR+ +LQ   +   
Sbjct: 364 AAVMDERLERLQQLIDSQQSAFNKAAIGQTVDVLFERAGRKPGQIVGRTAYLQPAHVFPG 423

Query: 441 -------NSKNHNIGDIIKVRITDVKISTLYGELVV 469
                   + +  +G I+ VR+  ++  +L GEL  
Sbjct: 424 PMFLGPGMAPDSLVGQILPVRVDSLERYSLLGELAA 459


>gi|148251670|ref|YP_001236255.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bradyrhizobium
           sp. BTAi1]
 gi|229890449|sp|A5E855|MIAB_BRASB RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|146403843|gb|ABQ32349.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bradyrhizobium sp. BTAi1]
          Length = 466

 Score =  520 bits (1338), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 241/444 (54%), Positives = 325/444 (73%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P++  +KSYGCQMNVYD+ RM D   ++G+       DADL++LNTCHIREKA+EKVYS 
Sbjct: 4   PRKLHIKSYGCQMNVYDAQRMVDTLGAEGFVETAEAGDADLVILNTCHIREKASEKVYSE 63

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR+R  K    ++G  + + VAGCVAQAEG EI+ R+P V+VVVGPQ+Y+ LPELL RA
Sbjct: 64  LGRLRVAKEEAARQGRAMQIAVAGCVAQAEGAEIVTRAPTVDVVVGPQSYHHLPELLARA 123

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             G+  ++T++  EDKF  L+       R RGV+AF+T+QEGCDKFCTFCVVPYTRG E+
Sbjct: 124 GRGEPAIETEFPAEDKFGFLARPSREAIRARGVSAFVTVQEGCDKFCTFCVVPYTRGSEM 183

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR +++++DE  +L +NGV EITL+GQNVNA+ G+  DG   T   LLY ++EI G+ R+
Sbjct: 184 SRPVARILDEVTRLTENGVREITLIGQNVNAYHGEAPDGSTWTLGRLLYGIAEIPGVARI 243

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           RY+TSHP D+ D LI AH DL  +MP++HLPVQSGSDRIL  MNR+H A +YR+++DR R
Sbjct: 244 RYSTSHPNDVDDSLIAAHRDLASVMPFVHLPVQSGSDRILGLMNRKHGASDYRKVVDRFR 303

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           + RPDIA SSDFIVGFPGET++DFRAT+ L+ +IGYA A+SFKYSPR GTP ++M E V 
Sbjct: 304 AARPDIAFSSDFIVGFPGETEEDFRATLALIAQIGYAAAYSFKYSPRPGTPAADMQEMVS 363

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
                ERL  LQ  +  QQ +FN A +G +++VL E+  ++ G+LVGR+ +LQ   + + 
Sbjct: 364 ATEMDERLERLQSLIDSQQAAFNKAAIGTVVDVLFERAARKPGQLVGRTAYLQPAHVMAP 423

Query: 444 NHNIGDIIKVRITDVKISTLYGEL 467
           ++ IG ++ VRI  ++  +L GEL
Sbjct: 424 DNIIGQVLPVRIDSLERYSLLGEL 447


>gi|114326782|ref|YP_743939.1| tRNA 2-methylthioadenosine synthase [Granulibacter bethesdensis
           CGDNIH1]
 gi|122328233|sp|Q0BVY6|MIAB_GRABC RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|114314956|gb|ABI61016.1| tRNA 2-methylthioadenosine synthase [Granulibacter bethesdensis
           CGDNIH1]
          Length = 493

 Score =  517 bits (1332), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 250/446 (56%), Positives = 324/446 (72%), Gaps = 3/446 (0%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +R  V ++GCQMNVYDS RM D+    GY      + AD+IVLNTCHIR+KA EKV+S L
Sbjct: 35  KRLHVITWGCQMNVYDSARMTDVLSPLGYTAHAEPEGADMIVLNTCHIRDKATEKVFSEL 94

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR+R LK +R +EG  +L+ VAGCVAQAEGE+IL R+P V++V+GPQTY+RL  ++ RA 
Sbjct: 95  GRLRLLKEARAREGQPMLLAVAGCVAQAEGEQILARAPYVDIVLGPQTYHRLGGMVRRAM 154

Query: 145 FGKRVVDTDYSVEDKFERL---SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
            G+RV++TD+  EDKF+ L   +    G     G TAFLTIQEGCDKFC+FCVVPYTRG 
Sbjct: 155 NGERVIETDFPPEDKFDYLPEAAAPQHGPGLAGGRTAFLTIQEGCDKFCSFCVVPYTRGA 214

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E+SR  S V+ EAR+++  G  EITLLGQNVNA+ G G DGE  T + L+ +L++I  L+
Sbjct: 215 EVSRPASSVLAEARRMVRGGAREITLLGQNVNAYHGLGEDGEVWTLARLIRALADIPDLL 274

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+RYTTSHPRD+SD LI AH D+  LMP+LHLPVQSGSDRIL +MNRRHTA +Y +++DR
Sbjct: 275 RIRYTTSHPRDVSDDLIAAHRDIPQLMPFLHLPVQSGSDRILAAMNRRHTAEDYFRVVDR 334

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R  RPD+A+SSDFIVG PGETD+DF  TM L++++G+AQA+SFKYSPR GTP +     
Sbjct: 335 LREARPDLALSSDFIVGHPGETDEDFEDTMRLIERVGFAQAYSFKYSPRPGTPAAERDNH 394

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           V E V  ERL  LQ  LR QQ +FN AC+G+ + VL+   G+  G++ GRSPWLQ+V L+
Sbjct: 395 VPEPVMDERLQRLQALLRTQQEAFNTACIGKTVNVLLVTPGRHPGQIGGRSPWLQAVHLD 454

Query: 442 SKNHNIGDIIKVRITDVKISTLYGEL 467
           +    IG  + V IT    ++L   L
Sbjct: 455 APATLIGQEVPVTITAAHTNSLSATL 480


>gi|90421992|ref|YP_530362.1| tRNA-i(6)A37 modification enzyme MiaB [Rhodopseudomonas palustris
           BisB18]
 gi|123395291|sp|Q21C43|MIAB_RHOPB RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|90104006|gb|ABD86043.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Rhodopseudomonas
           palustris BisB18]
          Length = 473

 Score =  515 bits (1327), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 241/446 (54%), Positives = 321/446 (71%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P++  +KS+GCQMNVYD+ RM D    +G+    + D+ADL++LNTCHIREKA+EKVYS 
Sbjct: 4   PRKLHIKSFGCQMNVYDAQRMVDALAPEGFVETANADEADLVILNTCHIREKASEKVYSE 63

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR+R  K+    +G  + + VAGCVAQAEG EI+RR P V+VVVGPQ+Y+ LP+LL  A
Sbjct: 64  LGRLRVAKDEAALQGRRMNIAVAGCVAQAEGAEIIRRQPAVDVVVGPQSYHHLPQLLAEA 123

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             G R ++T++ V+DKF  L        R RG++AF+T+QEGCDKFCTFCVVPYTRG E+
Sbjct: 124 ARGGRALETEFPVDDKFGFLPPPQPDAIRARGISAFVTVQEGCDKFCTFCVVPYTRGAEV 183

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR + ++V++ R+L DNGV EITL+GQNVNA+ G G DG       LL+ L++I G+VRL
Sbjct: 184 SRPVDKIVEDVRRLADNGVREITLIGQNVNAYHGDGPDGRPWPLGALLHHLAKIPGIVRL 243

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           RY+TSHPRD+   LI AH DL  LMP++HLPVQSGSD IL +MNR+H+A +YR+++DR R
Sbjct: 244 RYSTSHPRDVDQSLIDAHRDLPALMPFVHLPVQSGSDAILAAMNRKHSADDYRRLVDRFR 303

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           S  P IA SSDFIVGFPGETD+DF AT+ LV +IGYA A+SFKYSPR GTP + + E V 
Sbjct: 304 SANPAIAFSSDFIVGFPGETDEDFAATLALVTQIGYAGAYSFKYSPRPGTPAAELQETVS 363

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
             V  ERL+ LQ+ +  QQ +FN A +G  +EVL E+  +  G++VGR+ +LQ   + + 
Sbjct: 364 AAVMDERLVRLQELIDSQQAAFNAAVIGTTVEVLFERAARNPGQIVGRTAYLQPAHVMAA 423

Query: 444 NHNIGDIIKVRITDVKISTLYGELVV 469
              IG ++ VRI  ++  +L GEL  
Sbjct: 424 PDIIGQVLPVRIDSLERYSLIGELAA 449


>gi|27375906|ref|NP_767435.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bradyrhizobium
           japonicum USDA 110]
 gi|81740085|sp|Q89W97|MIAB_BRAJA RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|27349044|dbj|BAC46060.1| bll0795 [Bradyrhizobium japonicum USDA 110]
          Length = 465

 Score =  514 bits (1323), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 243/446 (54%), Positives = 324/446 (72%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P++  +KSYGCQMNVYD+ RM D    +G+    S +DADL++LNTCHIREKA+EKVYS 
Sbjct: 4   PRKLHIKSYGCQMNVYDAQRMVDTLAPEGFVETASAEDADLVILNTCHIREKASEKVYSE 63

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR+R  K+   + G  + + VAGCVAQAEGEEI+RR+P+V+VVVGPQ+Y+ LPELL+RA
Sbjct: 64  LGRLRVAKDEAARGGRAMQIAVAGCVAQAEGEEIVRRAPVVDVVVGPQSYHHLPELLKRA 123

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
               R V+T++   DKF  L+       R RG++AF+T+QEGCDKFCTFCVVPYTRG E+
Sbjct: 124 GNEGRAVETEFPAADKFGFLAQPKPDAIRARGISAFVTVQEGCDKFCTFCVVPYTRGAEV 183

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR ++++VD+ ++L DNGV E+TL+GQNVNA+ G G DG+      LL  L+ I G+ RL
Sbjct: 184 SRPVARIVDDVKRLADNGVRELTLIGQNVNAYHGDGPDGKSWPLGRLLEHLAGIPGIARL 243

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           RY+TSHPRD+ D LI AH DL  LMP++HLPVQSGSDRIL +MNR+HTA +YR++IDR R
Sbjct: 244 RYSTSHPRDVDDSLIAAHRDLAALMPFVHLPVQSGSDRILAAMNRKHTADDYRRVIDRFR 303

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           + R DIA SSDFIVGFPGE++ DF AT+ LV +IGYA A+SFKYS R GTP ++M E V 
Sbjct: 304 AARQDIAFSSDFIVGFPGESEQDFLATLALVTQIGYAAAYSFKYSARPGTPAADMQETVS 363

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
                +RL  LQ+ +  QQ +FN A +G  ++VL E+  ++ G++VGR+ +LQ   + + 
Sbjct: 364 PAEMDQRLERLQELIDSQQSAFNKAAIGSTVDVLFERPARKDGQIVGRTAFLQPAHVMAS 423

Query: 444 NHNIGDIIKVRITDVKISTLYGELVV 469
              IG I+ VRI  ++  +  GELV 
Sbjct: 424 PGIIGQILPVRIDSLERYSFLGELVT 449


>gi|86747716|ref|YP_484212.1| tRNA-i(6)A37 modification enzyme MiaB [Rhodopseudomonas palustris
           HaA2]
 gi|123408933|sp|Q2J2K9|MIAB_RHOP2 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|86570744|gb|ABD05301.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Rhodopseudomonas
           palustris HaA2]
          Length = 468

 Score =  513 bits (1322), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 242/451 (53%), Positives = 328/451 (72%), Gaps = 5/451 (1%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P++  +KSYGCQMNVYD+ RM D+   +G+    S+DDADL++LNTCHIREKA+EKV+S 
Sbjct: 4   PRKLHIKSYGCQMNVYDAQRMVDVLAPEGFVETASVDDADLVILNTCHIREKASEKVFSE 63

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR+R  ++   ++G  + +VVAGCVAQAEG+EI+RR P V+VVVGPQ+Y+ LP LL +A
Sbjct: 64  LGRLRLARDEASRDGRRMQIVVAGCVAQAEGDEIVRRQPAVDVVVGPQSYHHLPRLLAQA 123

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
               R ++T++ + DKF  L        R RG++AF+T+QEGCDKFCTFCVVPYTRG E+
Sbjct: 124 AQTGRALETEFPIADKFGFLPQPQPEAIRARGISAFVTVQEGCDKFCTFCVVPYTRGAEV 183

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR ++ ++ +  +L D+GV E+TL+GQNVNA+ G G DG   T   LL  L+ + G+VRL
Sbjct: 184 SRPVAAILADVERLADHGVRELTLIGQNVNAYHGDGPDGRPWTLGRLLQRLAAVPGIVRL 243

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           RY+TSHP D+ D LI AH DLD LMP++HLPVQSGSDRIL +MNR+HTA +YR++IDR R
Sbjct: 244 RYSTSHPNDVDDDLIAAHRDLDALMPFVHLPVQSGSDRILAAMNRKHTAADYRRVIDRFR 303

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           +VRP+IA SSDFIVGFPGETD DF AT+ LV +IGYA A+SFKYSPR GTP + M E V 
Sbjct: 304 AVRPEIAFSSDFIVGFPGETDADFEATLALVTQIGYAGAYSFKYSPRPGTPAAEMPEMVP 363

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL--- 440
             V  ERL  LQ+ +  QQ +FN A +G+ ++VL E+ G++ G++VGR+ +LQ   +   
Sbjct: 364 AAVMDERLERLQQVIDAQQSAFNRAAIGRTVDVLFERAGRKPGQIVGRTAYLQPAHVFPP 423

Query: 441 --NSKNHNIGDIIKVRITDVKISTLYGELVV 469
              + +  +G I+ VR+  ++  +L GEL  
Sbjct: 424 AGMAPDSLVGQILPVRVDSLERYSLLGELAA 454


>gi|157804180|ref|YP_001492729.1| hypothetical protein A1E_05140 [Rickettsia canadensis str. McKiel]
 gi|229890632|sp|A8F011|MIAB_RICCK RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|157785443|gb|ABV73944.1| hypothetical protein A1E_05140 [Rickettsia canadensis str. McKiel]
          Length = 446

 Score =  513 bits (1321), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 243/446 (54%), Positives = 338/446 (75%), Gaps = 7/446 (1%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ ++K+YGCQMNVYDS++M+D+ +  GYE   ++ +AD+I+LNTCHIREKAAEK+YS L
Sbjct: 3   KKLYIKTYGCQMNVYDSVKMQDLLYPFGYESTENIKEADVIILNTCHIREKAAEKIYSEL 62

Query: 85  GRIRNLKNSRIKEG-GDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           GRI+ L+++R K G    ++VVAGCVAQAEGEEI  R+P V++VVGPQ+YY LPEL+ + 
Sbjct: 63  GRIKKLQDTRKKHGLSSAIIVVAGCVAQAEGEEIFTRTPYVDIVVGPQSYYNLPELISKV 122

Query: 144 -RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            R  K ++D D+  E KF++L   +  Y   +G +AF+++QEGCDKFCTFCVVPYTRG+E
Sbjct: 123 VRHEKHLIDLDFVEEAKFDQLP--EQLY--PQGASAFISVQEGCDKFCTFCVVPYTRGVE 178

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR++ QV  EA K++ NG  EI LLGQNVNA+ GKG+D +  + +DL+  L++I  L R
Sbjct: 179 FSRNVEQVYREALKVVSNGAREIMLLGQNVNAYHGKGVDDKIFSLADLIRYLAQIPNLER 238

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LRYTTSHP DM+D LIK H     LMP++HLPVQSGS++ILK+MNR+H    Y  II+R+
Sbjct: 239 LRYTTSHPIDMTDDLIKLHSIESKLMPFVHLPVQSGSNKILKAMNRKHDREYYFNIINRL 298

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R  RPDI +SSDFIVGFPGETD+DF  T+DLV KI Y Q +SFKYSPR GTPG+   +Q+
Sbjct: 299 REARPDIVLSSDFIVGFPGETDEDFEDTLDLVRKIKYGQCYSFKYSPRPGTPGATRTDQI 358

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
            E++K+ERL  LQK+L  QQ++FN++CVG  ++VL ++ GK  G+++G++P++QSV +N+
Sbjct: 359 PEHIKSERLTILQKELSSQQLAFNESCVGSTMKVLFDRSGKFDGQIIGKTPYMQSVYINN 418

Query: 443 KNHN-IGDIIKVRITDVKISTLYGEL 467
            N + +  II V+IT    ++L GE+
Sbjct: 419 TNQDLLCKIIDVKITKATSNSLTGEI 444


>gi|298293911|ref|YP_003695850.1| RNA modification enzyme, MiaB family [Starkeya novella DSM 506]
 gi|296930422|gb|ADH91231.1| RNA modification enzyme, MiaB family [Starkeya novella DSM 506]
          Length = 476

 Score =  512 bits (1319), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 242/452 (53%), Positives = 330/452 (73%), Gaps = 10/452 (2%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P++ +V+S+GCQMNVYD+ RM D    +G+   +S DDADL++LNTCHIREKAAEKVYS 
Sbjct: 4   PRKLYVRSFGCQMNVYDAQRMTDTLAKEGFVETDSPDDADLVILNTCHIREKAAEKVYSE 63

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR+R  +    + G   +V VAGCVAQAEG EI++R+  V++VVGPQ+Y++LPEL+  A
Sbjct: 64  LGRLRKAQE---EAGRSQMVAVAGCVAQAEGAEIIKRARAVDLVVGPQSYHKLPELVAEA 120

Query: 144 RF-----GKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
           +      GKR  +V+T++ VEDKF+ L         KRG  AF+T+QEGCDKFCTFCVVP
Sbjct: 121 QARRDGNGKRAKLVETEFPVEDKFDFLPPPTSAAITKRGPAAFVTVQEGCDKFCTFCVVP 180

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256
           YTRG E+SR LS+++DE  +L D+GV EITL+GQNVNA+ G    G     ++L+  ++E
Sbjct: 181 YTRGAEVSRPLSKILDEVVRLADSGVREITLIGQNVNAYHGLDAGGRSANLAELVRRVAE 240

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           + G+ R+RYTTSHPRDM + LI AHG++  LMPYLHLPVQSGS+RIL +MNR+H    + 
Sbjct: 241 VPGIARVRYTTSHPRDMDEELIAAHGEMPALMPYLHLPVQSGSNRILAAMNRKHDRELFF 300

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
            I++++R+ RPDIA SSDFIVGFPGETD+DF  TMDLV+K+G+A AFSFKYSPR GTP +
Sbjct: 301 DIVEKVRAARPDIAFSSDFIVGFPGETDEDFADTMDLVEKVGFASAFSFKYSPRPGTPAA 360

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQ 436
            M  Q+ E VK+ R+  LQ  L  Q+ +F++ C G+  E+L+EK G+  G+L+GRSP+LQ
Sbjct: 361 GMEAQLPEAVKSARIHALQALLDGQKAAFDEGCRGRRFEILLEKPGRFPGQLIGRSPYLQ 420

Query: 437 SVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           SVV+ +    IG +  V + +V   +L G+++
Sbjct: 421 SVVVEAPVEAIGTLAMVEVREVSTKSLSGDII 452


>gi|312113950|ref|YP_004011546.1| RNA modification enzyme, MiaB family [Rhodomicrobium vannielii ATCC
           17100]
 gi|311219079|gb|ADP70447.1| RNA modification enzyme, MiaB family [Rhodomicrobium vannielii ATCC
           17100]
          Length = 469

 Score =  511 bits (1317), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 246/442 (55%), Positives = 323/442 (73%), Gaps = 9/442 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +R F+K++GCQMNVYDS RM D   + G+    + +DADL++LNTCHIREKAAEKV+S L
Sbjct: 22  KRVFIKTFGCQMNVYDSERMADALGAAGFVETGAPEDADLVILNTCHIREKAAEKVFSEL 81

Query: 85  GRIRNLKNSRIKEGG-DLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           GR+R L+ +R ++GG +L++ VAGCVAQAEGEEI RR+  V+++VGPQ+Y+RLPEL+ER 
Sbjct: 82  GRLRVLREARRQDGGGNLMIAVAGCVAQAEGEEIARRA-AVDIIVGPQSYHRLPELIER- 139

Query: 144 RFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           R   R  V++T++   +KF  L         +   +AFLT+QEGCDKFCTFCVVPYTRG 
Sbjct: 140 RASTRGPVIETEFPAAEKFASLP----APKLRAAPSAFLTVQEGCDKFCTFCVVPYTRGA 195

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR ++Q+++EA++L + GV EITLLGQNVNAW G+G  G+  T  DLL +LSE+ G+ 
Sbjct: 196 EYSRPVAQIIEEAKRLAERGVREITLLGQNVNAWAGEGPSGKTWTLPDLLAALSEVNGIA 255

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           RLR+TTSHP DMSD LI AH DL  LMPYLHLP QSGSDRILK+MNR+H   +Y +I+ R
Sbjct: 256 RLRFTTSHPNDMSDALIAAHRDLPKLMPYLHLPFQSGSDRILKAMNRKHRMEDYLRIVHR 315

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R  RPD+A+S+D IVGFPGETD DF  TM +V+++ +AQA+SFKYSPR GTP ++   Q
Sbjct: 316 LRDARPDLALSTDIIVGFPGETDADFEETMRMVERVHFAQAYSFKYSPRPGTPAADRAAQ 375

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           V E+VK+ERL  LQ  L  QQ +FN A VG+ + VL E  G+ +G++VGRSP+LQ V   
Sbjct: 376 VPEDVKSERLARLQALLFAQQTAFNAAMVGRTLSVLWESRGRNEGQVVGRSPYLQPVYAE 435

Query: 442 SKNHNIGDIIKVRITDVKISTL 463
                IG I  V I     ++L
Sbjct: 436 GDPALIGHIADVEIVAASQNSL 457


>gi|254511318|ref|ZP_05123385.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Rhodobacteraceae
           bacterium KLH11]
 gi|221535029|gb|EEE38017.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Rhodobacteraceae
           bacterium KLH11]
          Length = 439

 Score =  511 bits (1316), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 250/445 (56%), Positives = 322/445 (72%), Gaps = 9/445 (2%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P++ F+K+YGCQMNVYDS RM +    QGY    S DDAD+I+LNTCHIREKAAEKVYS 
Sbjct: 4   PKKLFIKTYGCQMNVYDSERMAEALGGQGYVETKSPDDADMILLNTCHIREKAAEKVYSE 63

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK     E  DL + VAGCVAQAEGEEI+RR P+V++VVGPQ+Y+RLPE+  + 
Sbjct: 64  LGRFKGLK----AEKPDLKIGVAGCVAQAEGEEIMRRQPLVDLVVGPQSYHRLPEMEAKT 119

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           R G++ +DTD+  EDKFE+L         KRG TAFLT+QEGCDKFC FCVVPYTRG E+
Sbjct: 120 RGGEKALDTDFPEEDKFEKLK---SRPKAKRGPTAFLTVQEGCDKFCAFCVVPYTRGAEV 176

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR   +++ EA+ L++ GV EITLLGQNVNA+ G G DG+  T + L++ L+++ GL R+
Sbjct: 177 SRPADRIIREAQDLVERGVREITLLGQNVNAYHGAGPDGD-MTLAALIWELNKVDGLERI 235

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+TTSHP DM D LI+AHG  D LMPYLHLPVQSGSDR+LK MNR HTA  Y ++I+RIR
Sbjct: 236 RFTTSHPNDMDDALIEAHGTCDKLMPYLHLPVQSGSDRVLKRMNRSHTAESYLRLIERIR 295

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
             RPDI +S DFIVGFP ETD+DF+AT+DLV+++ Y  A+SFKYS R GTP +    QV+
Sbjct: 296 EARPDILMSGDFIVGFPEETDEDFQATLDLVEEVKYGYAYSFKYSTRPGTPAAER-PQVE 354

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
             V  ERL  LQ  +   Q    DA VGQ + VL EK G++ G++VG+S +L +V ++  
Sbjct: 355 AEVADERLQRLQAMITRHQREIQDAMVGQTVSVLFEKPGRQPGQMVGKSEYLHAVHVSDT 414

Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468
           +   GD+ KV+IT    ++L G L+
Sbjct: 415 DVEAGDLRKVKITASGANSLGGALI 439


>gi|163797130|ref|ZP_02191085.1| tRNA 2-methylthioadenosine synthase [alpha proteobacterium BAL199]
 gi|159177646|gb|EDP62199.1| tRNA 2-methylthioadenosine synthase [alpha proteobacterium BAL199]
          Length = 454

 Score =  511 bits (1316), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 252/440 (57%), Positives = 314/440 (71%), Gaps = 10/440 (2%)

Query: 36  MNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRI 95
           MNVYDS RM D+    GYE  +S DDADLI+LNTCHIREKA EKVYS LGR+R LK+   
Sbjct: 1   MNVYDSTRMVDVMAPHGYEPGDSPDDADLIILNTCHIREKATEKVYSELGRLRALKDEAA 60

Query: 96  KEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA-----RFGKRVV 150
           ++G  +L+ VAGCVAQAEGEEI RR+P V++V GPQTY+RLPEL+ RA       G  VV
Sbjct: 61  RQGRKMLIGVAGCVAQAEGEEIARRAPTVDLVFGPQTYHRLPELVVRALDRSLSGGAGVV 120

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
           DTD+  E KF+ L       +R +G  AFL++QEGCDKFCTFCVVPYTRG E SR  + V
Sbjct: 121 DTDFPAEAKFDHLP----EESRSQGAAAFLSVQEGCDKFCTFCVVPYTRGAEFSRPAADV 176

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC-TFSDLLYSLSEIKGLVRLRYTTSH 269
           + EAR+++  G  EITLLGQNVNA+ G+   G        L+ +L+EI GL R+RYTTSH
Sbjct: 177 LVEARRMVAGGTVEITLLGQNVNAYHGEAATGGGTWGLGRLVRALAEIDGLERIRYTTSH 236

Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329
           PRD+ D LI AH D+  LMPYLHLPVQSGSDRIL +MNR+HTA  YR+IIDR+R  RPD+
Sbjct: 237 PRDVDDELIAAHRDVPELMPYLHLPVQSGSDRILAAMNRKHTAEAYRRIIDRLRDARPDL 296

Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAE 389
           A SSDFIVGFPGETD DF  T+ LV ++GYAQA+SFKYS R GTP ++M + V E VK E
Sbjct: 297 AFSSDFIVGFPGETDQDFVETLRLVREVGYAQAYSFKYSARPGTPAADMGDAVPETVKTE 356

Query: 390 RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGD 449
           RL  LQ+ +  QQ++FN    G +  VL E+ G   G+L+GR PW+QSV  ++ +  +G 
Sbjct: 357 RLTALQQLIGAQQIAFNAGATGSVQSVLFERRGNRAGQLIGRGPWMQSVHADAPDRMLGR 416

Query: 450 IIKVRITDVKISTLYGELVV 469
           I+ VRI D   ++L G +VV
Sbjct: 417 IVPVRILDGHANSLSGAVVV 436


>gi|300024986|ref|YP_003757597.1| RNA modification enzyme, MiaB family [Hyphomicrobium denitrificans
           ATCC 51888]
 gi|299526807|gb|ADJ25276.1| RNA modification enzyme, MiaB family [Hyphomicrobium denitrificans
           ATCC 51888]
          Length = 449

 Score =  510 bits (1314), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 246/445 (55%), Positives = 320/445 (71%), Gaps = 7/445 (1%)

Query: 24  PQR--FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           P+R  +F+K++GCQMNVYDS RM +     GY   + +D ADL++LNTCHIREKAAEKVY
Sbjct: 4   PERKTYFLKTFGCQMNVYDSERMAETLARDGYSETSDVDGADLVILNTCHIREKAAEKVY 63

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S LGRIR++KN R K+G + ++ VAGCVAQAEG EI  R P V++V+GPQ+Y+RLPEL+ 
Sbjct: 64  SELGRIRDVKNERAKDGKNTVIAVAGCVAQAEGPEITARQPAVDLVIGPQSYHRLPELIT 123

Query: 142 RARFG-KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           R     K +V+T++  ++KF R+        R    +AFLTIQEGCDKFCTFCVVPYTRG
Sbjct: 124 RTTVDRKHIVETEFPGDEKFARMK----APRRISSPSAFLTIQEGCDKFCTFCVVPYTRG 179

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E SRS++++  EA +L   G  E+ LLGQNVNA+ G+G DG   + +DL+ +L+ I+G+
Sbjct: 180 SEYSRSVAKIEAEAHELARAGAKELVLLGQNVNAYHGEGADGRTASLADLIRTLAAIEGV 239

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+RY TSHPRDMSD LI AH D+  LMP+LHLPVQSGSDRIL  MNR+HTA EY  +I 
Sbjct: 240 ERIRYMTSHPRDMSDDLIAAHADVPQLMPFLHLPVQSGSDRILAKMNRKHTAAEYVDLIA 299

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           RIR  RPDIA+SSDFIVGFPGET+ D   T+ L++ +G+AQAFSFKYS R GTP +   +
Sbjct: 300 RIRKARPDIALSSDFIVGFPGETEQDAEDTIALIEAVGFAQAFSFKYSARPGTPAAGHGD 359

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440
           Q+DE VK+ERLL LQ  L  QQVSFN   +G ++ VL E+ G+E G+ VGR+P+LQ V  
Sbjct: 360 QLDEAVKSERLLRLQAVLDAQQVSFNAQSLGGVVPVLFERKGREAGEFVGRTPYLQLVHA 419

Query: 441 NSKNHNIGDIIKVRITDVKISTLYG 465
             +   IG    V + + + S+L G
Sbjct: 420 AGEGDLIGKTANVAVNETRRSSLSG 444


>gi|114571572|ref|YP_758252.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Maricaulis
           maris MCS10]
 gi|122314895|sp|Q0AK79|MIAB_MARMM RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|114342034|gb|ABI67314.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Maricaulis maris MCS10]
          Length = 456

 Score =  510 bits (1313), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 250/450 (55%), Positives = 325/450 (72%), Gaps = 12/450 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +R F+K+YGCQMNVYDS RM+D+    GYE   + + ADL++LNTCHIREKAAEKVYS L
Sbjct: 6   KRLFIKTYGCQMNVYDSDRMKDVLTPLGYESAETPEGADLVILNTCHIREKAAEKVYSEL 65

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR+R LK+ +   GG + + VAGCVAQAEG EI++R+P+V++VVGPQTY++LPEL+ +A 
Sbjct: 66  GRLRPLKDEKAASGG-MTIAVAGCVAQAEGAEIMKRAPVVDLVVGPQTYHKLPELIAQAH 124

Query: 145 FGK-RVVDTDYSVEDKFERLSIVDGGYNRK-RGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
             K   +DT++ VEDKF+RL     G +R+  G +AF+T+QEGCDKFCTFCVVPYTRG E
Sbjct: 125 RAKGEALDTEFEVEDKFDRL-----GSDRQVEGYSAFVTVQEGCDKFCTFCVVPYTRGAE 179

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT----FSDLLYSLSEIK 258
            SR + Q+V E R L   G+ E+TLLGQNVNA+ G    G +         L+  ++ I 
Sbjct: 180 WSRPVDQIVAEIRALAAKGIREVTLLGQNVNAFHGAPPSGREAEGAWGLGQLVRHVALIG 239

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           G+ R+R+TTSHPRDM + LI+A  D   LMPY HLPVQ+GSD+ILKSMNR+HTA EY  I
Sbjct: 240 GIERIRFTTSHPRDMDEVLIQAFADTPKLMPYFHLPVQAGSDKILKSMNRQHTAEEYVAI 299

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           IDR+R+ RPDIAIS D IVGFPGETD DF AT+DLV ++ +A  FSFKYS R GTPG+ M
Sbjct: 300 IDRLRAARPDIAISGDMIVGFPGETDADFEATLDLVRRVKFASCFSFKYSKRPGTPGAAM 359

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSV 438
             QVDE VK+ RL  LQ+ L +QQ +FN++ +G+ + VL EK G+  G+L GRSP+LQSV
Sbjct: 360 FNQVDEGVKSARLAVLQELLSDQQAAFNESMIGRTLPVLFEKPGRMGGQLHGRSPYLQSV 419

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            ++     IG + +VRI     ++L G L 
Sbjct: 420 HVDGPAELIGQVGEVRIEAASRNSLSGSLT 449


>gi|316931567|ref|YP_004106549.1| RNA modification enzyme, MiaB family [Rhodopseudomonas palustris
           DX-1]
 gi|315599281|gb|ADU41816.1| RNA modification enzyme, MiaB family [Rhodopseudomonas palustris
           DX-1]
          Length = 463

 Score =  509 bits (1312), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 236/445 (53%), Positives = 326/445 (73%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P++  +KSYGCQMNVYD+ RM D    +G+    ++DDADL++LNTCHIREKA+EKVYS 
Sbjct: 4   PRKLHIKSYGCQMNVYDAQRMVDALAPEGFVETANVDDADLVILNTCHIREKASEKVYSE 63

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR+R  ++     G  + + VAGCVAQAEGEEI+RR+P+V+VVVGPQ+Y+ LP+LL RA
Sbjct: 64  LGRLRVARDEAASHGRRMQIAVAGCVAQAEGEEIIRRAPVVDVVVGPQSYHNLPQLLARA 123

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
               R ++T++ ++DKF  L        R RG++AF+T+QEGCDKFCTFCVVPYTRG E+
Sbjct: 124 NRDGRALETEFPIDDKFGVLPQPAPDAIRARGISAFVTVQEGCDKFCTFCVVPYTRGAEM 183

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR ++ ++ + ++L D+GV E+TL+GQNVNA+ G G +G   +   L+  L+EI G+VRL
Sbjct: 184 SRPVAAIIADVQRLADHGVREVTLIGQNVNAYHGDGPNGGAWSLGRLVRRLAEIPGIVRL 243

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           RY+TSHP D+ D L+ AH DL  LMP++HLPVQSGSDRIL +MNR+HTA +YR++IDR R
Sbjct: 244 RYSTSHPNDVDDDLLTAHRDLPALMPFVHLPVQSGSDRILAAMNRKHTADDYRRVIDRFR 303

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           +    IA SSDFIVGFPGET+ DF AT+ LV +IGYA A+SFKYSPR GTP + M E V 
Sbjct: 304 AASDAIAFSSDFIVGFPGETERDFSATLALVAQIGYAGAYSFKYSPRPGTPAAEMPEMVP 363

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
             V  ERL  LQ+ + +QQ +FN A +G+ +EVL E+ G++ G++VGR+ +LQ   + + 
Sbjct: 364 AAVMDERLERLQQLIDQQQAAFNKAAIGRTVEVLFERAGRKPGQIVGRTAYLQPAHVMAP 423

Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468
           +  +G ++ VR+  ++  +L GEL 
Sbjct: 424 DSIVGQVLPVRVDSLERYSLLGELA 448


>gi|84502860|ref|ZP_01000973.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Oceanicola batsensis
           HTCC2597]
 gi|84388843|gb|EAQ01713.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Oceanicola batsensis
           HTCC2597]
          Length = 440

 Score =  509 bits (1312), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 258/446 (57%), Positives = 328/446 (73%), Gaps = 10/446 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
            P++ F+K+YGCQMNVYDS RM +     GY  V S ++AD+I+LNTCHIREKAAEKVYS
Sbjct: 3   TPRKLFIKTYGCQMNVYDSERMAEALGGSGYTEVGSPEEADMILLNTCHIREKAAEKVYS 62

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            LGR ++LK ++     DL + VAGCVAQAEGEEI+RR P+V++VVGPQ+Y+RLPE+  +
Sbjct: 63  ELGRYKDLKAAKP----DLKIGVAGCVAQAEGEEIIRRQPMVDLVVGPQSYHRLPEMEAK 118

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           A   ++VVDTD+  EDKFERL         KRG TAFLT+QEGCDKFC FCVVPYTRG E
Sbjct: 119 AGT-EKVVDTDFPEEDKFERLKARP---KAKRGPTAFLTVQEGCDKFCAFCVVPYTRGAE 174

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR +++V+ EAR L++ GV EITLLGQNVNA+ G+G DG   + + L+  L+EI+GL R
Sbjct: 175 VSRPVARVLTEARDLVERGVREITLLGQNVNAYHGEGPDGRDWSLAGLIRELAEIEGLER 234

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP DMSD LI AHG++  LMPYLHLPVQSGSDRILK MNR H    Y ++IDRI
Sbjct: 235 IRFTTSHPNDMSDDLIAAHGEVGKLMPYLHLPVQSGSDRILKRMNRSHDRDSYLRLIDRI 294

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+ RPDI IS DFIVGFP ETD DFR TM L++++ Y QAFSFKYS R GTP +   EQV
Sbjct: 295 RAARPDILISGDFIVGFPEETDADFRDTMRLIEEVRYGQAFSFKYSTRPGTPAAER-EQV 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
            E VK+ RL  LQ  +  QQ +  DA VGQ + VLIE+ G+  G++VG+S  L +V L +
Sbjct: 354 AEEVKSARLQELQALITRQQRAVQDAMVGQTVGVLIERAGRMPGQMVGKSDHLHAVHLTA 413

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
            +   GD+++VRIT+   ++L G L 
Sbjct: 414 -DLAPGDLVRVRITESGPNSLGGVLA 438


>gi|149914119|ref|ZP_01902650.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Roseobacter sp. AzwK-3b]
 gi|149811638|gb|EDM71471.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Roseobacter sp. AzwK-3b]
          Length = 446

 Score =  509 bits (1311), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 248/445 (55%), Positives = 325/445 (73%), Gaps = 7/445 (1%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ ++K+YGCQMNVYDS RM +   S GY   ++ DDAD+I+LNTCHIREKAAEKVYS L
Sbjct: 5   KKLYIKTYGCQMNVYDSERMAEAMGSAGYVETDTPDDADMILLNTCHIREKAAEKVYSEL 64

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR R LK++R     DL + VAGCVAQAEG+EI+RR P+V++VVGPQ+Y+RLP+L  + R
Sbjct: 65  GRFRPLKDARP----DLKIGVAGCVAQAEGDEIMRRQPLVDLVVGPQSYHRLPQLEAQTR 120

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G R +DTD+ ++DKFE L     G    RG TAFLT+QEGCDKFC FCVVPYTRG E S
Sbjct: 121 TGARALDTDFPLDDKFEALKTR--GPKASRGPTAFLTVQEGCDKFCAFCVVPYTRGAEAS 178

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R  ++++DEAR+L+D GV EITLLGQNVNA+ G G DG   + + L+++L  I GL R+R
Sbjct: 179 RPAARILDEARELVDRGVREITLLGQNVNAYHGTGPDGSDWSLARLIWALDAIDGLERIR 238

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +TTSHP DM+D LI+AH     LMPYLHLPVQSGSDRILK MNR+HTA  Y ++I+RIR+
Sbjct: 239 FTTSHPNDMADDLIEAHASCAKLMPYLHLPVQSGSDRILKRMNRKHTAESYLRLIERIRA 298

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
            RPDI +S DFIVGFP ET+ DF+ATMDL++++ Y  A+SFKYS R GTP +    Q+DE
Sbjct: 299 ARPDILMSGDFIVGFPEETEADFQATMDLIEEVKYGYAYSFKYSTRPGTPAAER-AQLDE 357

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
           +VK +RL  LQ ++   Q +  DA VG+ + VL EK G+  G++VG+S +L +V +    
Sbjct: 358 DVKTDRLHRLQARITHHQRAIQDAMVGRTVGVLFEKPGRLPGQMVGKSDYLHAVHVADCP 417

Query: 445 HNIGDIIKVRITDVKISTLYGELVV 469
              GD+ +V IT+   ++L G LV 
Sbjct: 418 LQPGDLARVEITESGSNSLAGRLVA 442


>gi|254417885|ref|ZP_05031609.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Brevundimonas sp. BAL3]
 gi|196184062|gb|EDX79038.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Brevundimonas sp. BAL3]
          Length = 472

 Score =  509 bits (1310), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 250/447 (55%), Positives = 322/447 (72%), Gaps = 7/447 (1%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +R F+K+YGCQMNVYDS RM D+    GY     +  AD ++LNTCHIREKAAEK+YS L
Sbjct: 18  KRLFIKTYGCQMNVYDSERMADVLRPLGYAVTEDVRAADFVILNTCHIREKAAEKIYSEL 77

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER-A 143
           G++R L++ + + GGDL + VAGCVAQAEGEEI++R P V++VVGPQ Y++LPELL R A
Sbjct: 78  GKLRELRDIKRETGGDLTIAVAGCVAQAEGEEIMKRQPAVDIVVGPQAYHQLPELLTRTA 137

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           R     +  D++ +DKF+ L           G TAFLT+QEGCDKFCTFCVVPYTRG E 
Sbjct: 138 RARGERIGADFAPDDKFDALPAA----RFTEGPTAFLTVQEGCDKFCTFCVVPYTRGAEW 193

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR L+ V++EAR L   GV E+TLLGQNVNA+ G+  DG K +  +L Y+L+EI GL R+
Sbjct: 194 SRPLASVLEEARALAGRGVREVTLLGQNVNAYDGERPDGRKSSLVELAYALAEIPGLDRI 253

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           RYTTSHP DMSD LI AHGDLD LMPYLHLPVQ+GSDRIL+ MNR+H    Y  +IDRIR
Sbjct: 254 RYTTSHPNDMSDDLIAAHGDLDALMPYLHLPVQAGSDRILRLMNRKHGRQTYFDLIDRIR 313

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           + RPDIA++ DFIVGFPGETD +F  T+DLV ++ YA AF+F YSPR GTP + M +QV+
Sbjct: 314 ATRPDIAMAGDFIVGFPGETDREFEDTLDLVRRVNYASAFAFMYSPRPGTPAAGMGKQVE 373

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE--KGKLVGRSPWLQSVVLN 441
             V  +RL  L + L EQQ++FN A  G+ + VL ++ G+   + + VGRSP+LQSV ++
Sbjct: 374 PEVAKDRLHRLIELLTEQQIAFNAAQAGRTLNVLFDRKGRHGSRRQAVGRSPYLQSVHVD 433

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
             +H IG I+ V I   + ++L G LV
Sbjct: 434 GADHLIGRIVPVEIIAGQHNSLTGRLV 460


>gi|89053188|ref|YP_508639.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Jannaschia sp.
           CCS1]
 gi|122999629|sp|Q28UJ8|MIAB_JANSC RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|88862737|gb|ABD53614.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Jannaschia sp. CCS1]
          Length = 462

 Score =  509 bits (1310), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 247/444 (55%), Positives = 326/444 (73%), Gaps = 9/444 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ FVK+YGCQMNVYDS RM +    +GYE+VN+ + AD+I+LNTCHIREKAAEK+YS L
Sbjct: 28  KKLFVKTYGCQMNVYDSERMAEALGGEGYEQVNTPEGADMILLNTCHIREKAAEKMYSEL 87

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR+R L+++      DL + VAGCVAQAEGEEI+RR P+V++VVGPQTY+RLP+++E   
Sbjct: 88  GRLRPLRDANP----DLKIGVAGCVAQAEGEEIMRRQPLVDLVVGPQTYHRLPKMMEAVN 143

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G++ +DTD+  EDKF  L          RG TAFLT+QEGCDKFC FCVVPYTRG E+S
Sbjct: 144 AGEKALDTDFPEEDKFLNLPKA----RATRGPTAFLTVQEGCDKFCAFCVVPYTRGAEVS 199

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           RS  +++ EAR L+D GV EITLLGQNVNA+ G G DG     + L+  +++I GL R+R
Sbjct: 200 RSAERLMAEARDLVDRGVREITLLGQNVNAYHGAG-DGGTWGLARLIREMAKIDGLDRIR 258

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +TTSHP DM D LI AHGD   LMPYLHLPVQ+GSD+ILK+MNR+HTA +Y ++IDRIR 
Sbjct: 259 FTTSHPNDMEDDLIAAHGDCPELMPYLHLPVQAGSDKILKAMNRKHTAADYIRLIDRIRD 318

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
            RPD+ +S DFIVGFPGET++DF+AT+DLV+ +GY  A+SFKYS R GTP +    QV E
Sbjct: 319 ARPDLHLSGDFIVGFPGETEEDFQATLDLVETVGYGTAYSFKYSARPGTPAAERTGQVSE 378

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
              ++RL  LQ  L +QQ +  DA VG+ ++VL EK G+  G+++G+S +L SV ++  +
Sbjct: 379 AEASDRLQRLQALLTQQQRAAQDAMVGRRVKVLFEKPGRNPGQMIGKSEYLHSVHVDGPD 438

Query: 445 HNIGDIIKVRITDVKISTLYGELV 468
              G I +V I + K ++L G LV
Sbjct: 439 TLRGQIAEVEIAESKTNSLTGRLV 462


>gi|115522235|ref|YP_779146.1| RNA modification protein [Rhodopseudomonas palustris BisA53]
 gi|122298059|sp|Q07V68|MIAB_RHOP5 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|115516182|gb|ABJ04166.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Rhodopseudomonas
           palustris BisA53]
          Length = 465

 Score =  508 bits (1308), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 241/445 (54%), Positives = 318/445 (71%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P++  +KS+GCQMNVYD+ RM D    +G+    S DDADL++LNTCHIREKAAEKVYS 
Sbjct: 4   PRKLHIKSFGCQMNVYDAQRMVDALAPEGFVETQSADDADLVILNTCHIREKAAEKVYSE 63

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LG++R LK      G    + VAGCVAQAEG EI+RR P V+VVVGPQ+Y+ LPELLE+A
Sbjct: 64  LGKLRLLKQDAASHGRRFEIAVAGCVAQAEGAEIIRRQPAVDVVVGPQSYHHLPELLEKA 123

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           R   R ++T++ +EDKF  L        R RGV+AF+T+QEGCDKFC+FCVVPYTRG E+
Sbjct: 124 RRDGRALETEFPIEDKFGVLPPPRPDAIRARGVSAFVTVQEGCDKFCSFCVVPYTRGAEM 183

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR +++++D+ ++LIDNGV EITL+GQNVNA+ G+G D    T   LL  L+ + G+ RL
Sbjct: 184 SRPVAKILDDVKRLIDNGVREITLIGQNVNAYHGEGPDDRPWTLGALLRHLASVPGVARL 243

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           RY+TSHP D+ D LI AH +L  LMP++HLPVQSGSD IL +MNRRH+A +YR++IDR R
Sbjct: 244 RYSTSHPLDVDDELIAAHRELPGLMPFVHLPVQSGSDAILAAMNRRHSADDYRRVIDRFR 303

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              P IA SSDFIVGFPGETD DF AT+ LV +IGYA A+SFKYSPR GTP + + E V 
Sbjct: 304 QADPSIAFSSDFIVGFPGETDRDFEATLALVTQIGYAGAYSFKYSPRPGTPAAELQEMVA 363

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
             V  +RL  LQ  +  QQ +FN A +G  ++VL E+  +  G++VGR+ +LQ   + + 
Sbjct: 364 PAVMDQRLEQLQGLIDSQQAAFNRASIGTTVDVLFERAARHPGQIVGRTAYLQPAHVMAA 423

Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468
           +  +G ++ V I  ++  +L GELV
Sbjct: 424 DDIVGQVLPVTIHSLERYSLIGELV 448


>gi|149186041|ref|ZP_01864355.1| 2-methylthioadenine synthetase [Erythrobacter sp. SD-21]
 gi|148830072|gb|EDL48509.1| 2-methylthioadenine synthetase [Erythrobacter sp. SD-21]
          Length = 449

 Score =  508 bits (1308), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 244/444 (54%), Positives = 316/444 (71%), Gaps = 9/444 (2%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+ + VKS+GCQMNVYD  RM +M   QG       ++ADL+VLNTCHIREKAAEKVYS 
Sbjct: 7   PKTYRVKSFGCQMNVYDGERMAEMLGEQGIVPAPEGEEADLVVLNTCHIREKAAEKVYSD 66

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +GR   L  +  K G + L+ VAGCVAQAEGEEI++RSP V++VVGPQ Y+RLPE+L++A
Sbjct: 67  IGR---LAKAGRKAGKEPLIAVAGCVAQAEGEEIMKRSPAVSMVVGPQAYHRLPEMLDKA 123

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             G+R  DTD     KF  L        R+    +FLT+QEGCDKFCT+CVVPYTRG EI
Sbjct: 124 VKGERATDTDMPAIAKFAALP-----ERRRTNPASFLTVQEGCDKFCTYCVVPYTRGAEI 178

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR  + +V EA+KL+D G  EITLLGQNV+AW G+   G +   + L+  L+++ GL R+
Sbjct: 179 SRPYADLVTEAKKLVDAGAKEITLLGQNVSAWSGEDEKGHRVGLAGLIRDLAKVDGLARI 238

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           RYTTSHP DM D LI AHG++D LMP+LHLPVQ+GSDR+LK+MNR HTA  Y +++DR R
Sbjct: 239 RYTTSHPADMDDDLIAAHGEIDKLMPFLHLPVQAGSDRVLKAMNRSHTAESYLKLLDRFR 298

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           + RPD+A+S DFIVGFPGETD +F  T+ LVD++ YAQAFSFKYSPR GTP + M  QV 
Sbjct: 299 AARPDLALSGDFIVGFPGETDAEFEETLALVDEVRYAQAFSFKYSPRPGTPAATMDGQVS 358

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
           + V  ERL  LQ  L   Q++FN+A VG+  EVL+E+ GK  G+ +G+SPWLQSV    +
Sbjct: 359 KEVMDERLQRLQAALNRDQLAFNEASVGKTCEVLVERKGKHAGQWLGKSPWLQSVWFEGE 418

Query: 444 NHNIGDIIKVRITDVKISTLYGEL 467
              IGD+++  + +   ++L G L
Sbjct: 419 AR-IGDLVQAELVEAGPNSLAGRL 441


>gi|296532216|ref|ZP_06894966.1| MiaB family RNA modification enzyme [Roseomonas cervicalis ATCC
           49957]
 gi|296267460|gb|EFH13335.1| MiaB family RNA modification enzyme [Roseomonas cervicalis ATCC
           49957]
          Length = 464

 Score =  508 bits (1307), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 244/449 (54%), Positives = 315/449 (70%), Gaps = 7/449 (1%)

Query: 23  VPQR--FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKV 80
            PQR   F++++GCQMNVYDS RM D+    GY    + ++AD+++LNTCHIREKA+EKV
Sbjct: 12  APQRKKLFIRTWGCQMNVYDSTRMADVLAPLGYGPAETPEEADMVILNTCHIREKASEKV 71

Query: 81  YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140
           +S LGR+R LK  + + G  +++ VAGCVAQAEG EI  R+P V++V+GPQTY+RLPE++
Sbjct: 72  FSDLGRLRLLKTEKEQAGQKMVLAVAGCVAQAEGAEITVRAPWVDIVLGPQTYHRLPEMV 131

Query: 141 ERA-RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
            RA R     +DTD+ VE KF+ L  V    N  +G  AFLTIQEGCDKFC+FCVVPYTR
Sbjct: 132 ARASRAAGAQIDTDFPVEQKFDLLPEV----NANQGPIAFLTIQEGCDKFCSFCVVPYTR 187

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G E SR ++ ++ EAR+L+  G  EI LLGQNVNAW G+  DG   + S LLY+L+EI G
Sbjct: 188 GAEFSRPVAAILAEARRLVAGGAREIALLGQNVNAWHGEAPDGSTWSLSRLLYALAEIDG 247

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           L R+RYTTSHPRDM D LI+AHG +  LMP+LHLPVQSGSD++L +MNR H A  + +I 
Sbjct: 248 LARIRYTTSHPRDMDDALIEAHGRIPQLMPFLHLPVQSGSDKVLAAMNRGHKAELFYRIA 307

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
           DR+R  RPD+A+SSDFIVG PGET  D  ATM LV+K+G+A A+SFKYSPR GTP +   
Sbjct: 308 DRLREARPDMALSSDFIVGHPGETAADHAATMQLVEKVGFALAYSFKYSPRPGTPAAGQP 367

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV 439
            QV E  K  RL  LQ  LR QQ  FN ACVG+ +++L    G+  G++ GR+PWLQ V 
Sbjct: 368 FQVPEAEKDARLQELQAVLRRQQDEFNRACVGREVDILWTGPGRHPGQIAGRTPWLQPVH 427

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                   G I +VR+TD   ++L   L+
Sbjct: 428 AIGPAELAGRIARVRLTDAHPNSLSAVLL 456


>gi|67459670|ref|YP_247294.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Rickettsia felis
           URRWXCal2]
 gi|75535934|sp|Q4UK06|MIAB_RICFE RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|67005203|gb|AAY62129.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Rickettsia felis
           URRWXCal2]
          Length = 445

 Score =  507 bits (1306), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 242/447 (54%), Positives = 337/447 (75%), Gaps = 7/447 (1%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ ++K+YGCQMNVYDS++M+D+ +  GYE   +++DAD+I+L TCHIREKAAEK YS L
Sbjct: 3   KKLYIKTYGCQMNVYDSVKMQDLLYPFGYEPTENIEDADVIILITCHIREKAAEKTYSEL 62

Query: 85  GRIRNLKNSRIKEG-GDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           GRI+ L+++R K+G    ++VVAGCVAQAEGEEI  R+P V++VVGPQ+YY LPEL+ + 
Sbjct: 63  GRIKKLQDTRKKQGLNSAIIVVAGCVAQAEGEEIFSRAPYVDIVVGPQSYYNLPELISKV 122

Query: 144 -RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            R  K ++D D+  E KF+ L   +  Y   +G ++F+++QEGCDKFCTFCVVPYTRG E
Sbjct: 123 VRHEKHLIDLDFVEEAKFDNLP--EQLY--PQGASSFISVQEGCDKFCTFCVVPYTRGAE 178

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR++ QV  EA K++ +G  EITLLGQNVNA+ GKG D +  T +DLL  L++I  L R
Sbjct: 179 FSRNVEQVYREALKVVSSGAKEITLLGQNVNAYHGKGPDDKIFTLADLLGHLAQIPNLER 238

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LRY TSHP DM+D LIK HG    LMP+LHLPVQSGS++ILK+MNR+H    Y  II+R+
Sbjct: 239 LRYMTSHPIDMTDDLIKLHGTEPKLMPFLHLPVQSGSNKILKAMNRKHDRDYYFDIINRL 298

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R  RPDI +SSDFIVGFPGETD+DF  T+DLV ++ Y Q +SFKYSPR GTPG+   +QV
Sbjct: 299 RETRPDIVLSSDFIVGFPGETDEDFEDTLDLVRRVKYGQCYSFKYSPRPGTPGATRTDQV 358

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
            E++K+ERL  LQ++L  QQ++FN++CVG I++VL +++GK   +++G++P++QSV + +
Sbjct: 359 PEHIKSERLTILQQELTAQQLAFNESCVGSIMKVLFDRNGKFDDQIIGKTPYMQSVYIQN 418

Query: 443 KNHN-IGDIIKVRITDVKISTLYGELV 468
            N + +G I  V+IT    ++L GE++
Sbjct: 419 PNKSLLGKITDVKITKAASNSLTGEVI 445


>gi|84688004|ref|ZP_01015867.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84663985|gb|EAQ10486.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Rhodobacterales bacterium
           HTCC2654]
          Length = 443

 Score =  507 bits (1305), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 252/452 (55%), Positives = 330/452 (73%), Gaps = 9/452 (1%)

Query: 17  IVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA 76
           + DQ   P++ F+++YGCQMNVYDS RM +    QGY  V S D+AD+I+LNTCHIREKA
Sbjct: 1   MTDQSTDPKKLFIRTYGCQMNVYDSERMAEAMGGQGYVEVGSPDEADMILLNTCHIREKA 60

Query: 77  AEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL 136
           AEKVYS LGR ++LK+++     DL + VAGCVAQAEGEEI+RR P+V++VVGPQTY+RL
Sbjct: 61  AEKVYSELGRFKDLKDAKP----DLKIGVAGCVAQAEGEEIMRRQPMVDLVVGPQTYHRL 116

Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
           PE++E+   G++ +DTD+ +EDKFE   ++      KR  TAFLT+QEGCDKFC FCVVP
Sbjct: 117 PEMVEKVGRGEKALDTDFPLEDKFE---VLKNRPTAKRAPTAFLTVQEGCDKFCAFCVVP 173

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256
           YTRG E+SR   +++ EAR+L++ GV EITLLGQNVNA+ G G DG   + + L+++L++
Sbjct: 174 YTRGAEVSRPPERILREARELVERGVREITLLGQNVNAYHGAG-DGGDWSLARLIWALND 232

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           I GL R+R+TTSHP DMSD LI AHG+   LMPYLHLPVQSGSDRILK MNR+HTA EY 
Sbjct: 233 IDGLERIRFTTSHPNDMSDDLIAAHGECAKLMPYLHLPVQSGSDRILKRMNRKHTAEEYL 292

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
           ++I+RIR+ RPDI IS DFIVGFP ETD DF  T+DL+  + Y QAFSFKYS R GTP +
Sbjct: 293 RLIERIRAARPDILISGDFIVGFPEETDRDFEDTLDLIRAVNYGQAFSFKYSSRPGTPAA 352

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQ 436
                VDE   ++RL  LQ  + EQ     D  VG+ I VL EK G+ +G++ G+S +L 
Sbjct: 353 ER-PLVDEAEASDRLHRLQALINEQARGVMDGMVGREIGVLFEKPGRMEGQMAGKSDYLH 411

Query: 437 SVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           +V + ++    GD+ +VRIT+   ++L G LV
Sbjct: 412 AVHVKAEGIAPGDLRRVRITEAGPNSLAGALV 443


>gi|241068677|ref|XP_002408506.1| conserved hypothetical protein [Ixodes scapularis]
 gi|215492494|gb|EEC02135.1| conserved hypothetical protein [Ixodes scapularis]
          Length = 446

 Score =  507 bits (1305), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 240/444 (54%), Positives = 334/444 (75%), Gaps = 7/444 (1%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ ++K+YGCQMN+YDS++M+D+ +  GYE   +++DAD+I+LNTCHIREKAAEK YS L
Sbjct: 3   KKLYIKTYGCQMNIYDSVKMQDLLYPFGYEPTENIEDADVIILNTCHIREKAAEKTYSEL 62

Query: 85  GRIRNLKNSRIKEG-GDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           GRI+ ++++R K+G    ++VVAGCVAQAEGEEI  R+P V++VVGPQ+YY LPEL+ + 
Sbjct: 63  GRIKKIQDTRKKQGLNSAIIVVAGCVAQAEGEEIFTRTPYVDIVVGPQSYYNLPELISKV 122

Query: 144 -RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            R  K ++D D+  E KF++L   +  Y   +G +AF+++QEGCDKFCTFCVVPYTRG E
Sbjct: 123 VRHEKHLIDLDFVEEAKFDQLP--EQLY--PQGTSAFISVQEGCDKFCTFCVVPYTRGAE 178

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR++ QV  EA K++ +G  EI LLGQNVNA+ GKG   +  + +DLL  L++I  L R
Sbjct: 179 FSRNVEQVYREALKVVSSGAKEIMLLGQNVNAYHGKGPADKIFSLADLLKHLAQIPNLER 238

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LRYTTSHP DM+D LIK HG    LMP+LHLPVQSGS++ILKSMNR+H    Y  II+R+
Sbjct: 239 LRYTTSHPIDMNDDLIKLHGTEPKLMPFLHLPVQSGSNKILKSMNRKHDREYYFDIINRL 298

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R  RPDI +SSDFIVGFPGETD+DF  T+DLV ++ Y Q +SFKYSPR GTPG+   +Q+
Sbjct: 299 REARPDIVLSSDFIVGFPGETDEDFEDTLDLVRRVKYGQCYSFKYSPRPGTPGATRTDQI 358

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
            E++K+ERL  LQK+L  QQ++FN++CVG  ++VL +  GK   +++G++P++QSV + +
Sbjct: 359 PEHIKSERLTILQKELMAQQLAFNESCVGSTMKVLFDHDGKFDDQIIGKTPYMQSVYIQN 418

Query: 443 KNHN-IGDIIKVRITDVKISTLYG 465
            N + +G II V+IT   +++L G
Sbjct: 419 PNKSLLGKIIDVKITKASLNSLTG 442


>gi|239946801|ref|ZP_04698554.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Rickettsia endosymbiont
           of Ixodes scapularis]
 gi|239921077|gb|EER21101.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Rickettsia endosymbiont
           of Ixodes scapularis]
          Length = 464

 Score =  507 bits (1305), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 240/444 (54%), Positives = 334/444 (75%), Gaps = 7/444 (1%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ ++K+YGCQMN+YDS++M+D+ +  GYE   +++DAD+I+LNTCHIREKAAEK YS L
Sbjct: 21  KKLYIKTYGCQMNIYDSVKMQDLLYPFGYEPTENIEDADVIILNTCHIREKAAEKTYSEL 80

Query: 85  GRIRNLKNSRIKEG-GDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           GRI+ ++++R K+G    ++VVAGCVAQAEGEEI  R+P V++VVGPQ+YY LPEL+ + 
Sbjct: 81  GRIKKIQDTRKKQGLNSAIIVVAGCVAQAEGEEIFTRTPYVDIVVGPQSYYNLPELISKV 140

Query: 144 -RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            R  K ++D D+  E KF++L   +  Y   +G +AF+++QEGCDKFCTFCVVPYTRG E
Sbjct: 141 VRHEKHLIDLDFVEEAKFDQLP--EQLY--PQGTSAFISVQEGCDKFCTFCVVPYTRGAE 196

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR++ QV  EA K++ +G  EI LLGQNVNA+ GKG   +  + +DLL  L++I  L R
Sbjct: 197 FSRNVEQVYREALKVVSSGAKEIMLLGQNVNAYHGKGPADKIFSLADLLKHLAQIPNLER 256

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LRYTTSHP DM+D LIK HG    LMP+LHLPVQSGS++ILKSMNR+H    Y  II+R+
Sbjct: 257 LRYTTSHPIDMNDDLIKLHGTEPKLMPFLHLPVQSGSNKILKSMNRKHDREYYFDIINRL 316

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R  RPDI +SSDFIVGFPGETD+DF  T+DLV ++ Y Q +SFKYSPR GTPG+   +Q+
Sbjct: 317 REARPDIVLSSDFIVGFPGETDEDFEDTLDLVRRVKYGQCYSFKYSPRPGTPGATRTDQI 376

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
            E++K+ERL  LQK+L  QQ++FN++CVG  ++VL +  GK   +++G++P++QSV + +
Sbjct: 377 PEHIKSERLTILQKELMAQQLAFNESCVGSTMKVLFDHDGKFDDQIIGKTPYMQSVYIQN 436

Query: 443 KNHN-IGDIIKVRITDVKISTLYG 465
            N + +G II V+IT   +++L G
Sbjct: 437 PNKSLLGKIIDVKITKASLNSLTG 460


>gi|254474407|ref|ZP_05087793.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Ruegeria sp. R11]
 gi|214028650|gb|EEB69485.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Ruegeria sp. R11]
          Length = 440

 Score =  506 bits (1304), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 252/449 (56%), Positives = 326/449 (72%), Gaps = 15/449 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
            P++ F+K+YGCQMNVYDS RM +    +GY    S DDAD+I+LNTCHIREKAAEKVYS
Sbjct: 3   APKKLFIKTYGCQMNVYDSERMAEALGGEGYVETKSPDDADMILLNTCHIREKAAEKVYS 62

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            LGR + LK  +     DL + VAGCVAQAEGEEI+RR P+V++VVGPQ+Y+RLPE+  +
Sbjct: 63  ELGRFKGLKADKP----DLKIGVAGCVAQAEGEEIMRRQPLVDLVVGPQSYHRLPEMEAK 118

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNR---KRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           AR G++V+DTD+  EDKFE+L       NR   KRG TAFLT+QEGCDKFC FCVVPYTR
Sbjct: 119 ARTGEKVLDTDFPEEDKFEKLK------NRPKAKRGPTAFLTVQEGCDKFCAFCVVPYTR 172

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G E+SR   +++ EAR L++ GV EITLLGQNVNA+ G G +G+  T + L++ L ++ G
Sbjct: 173 GAEVSRPADRILREARDLVERGVREITLLGQNVNAYHGAGPNGD-MTLAQLIWELDKVDG 231

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           L R+R+TTSHP DM D LI+AHG    LMPYLHLPVQ+GSD+ILK MNR HTA  Y ++I
Sbjct: 232 LERIRFTTSHPNDMQDDLIEAHGTCAKLMPYLHLPVQAGSDKILKRMNRAHTAESYIRLI 291

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
           +RIR+ RPDI IS DFIVGFP ET++DF+ATMDLV+++ Y  A+SFKYS R GTP +   
Sbjct: 292 ERIRAARPDILISGDFIVGFPEETEEDFQATMDLVEEVKYGTAYSFKYSTRPGTPAAERA 351

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV 439
            QVD     +RL  LQ  L +QQ    D+ VG+ + VL EK G+  G++VG+S +L +V 
Sbjct: 352 -QVDPAAADDRLQRLQALLTQQQREVQDSMVGREVGVLFEKAGRLPGQMVGKSDYLHAVH 410

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
           +   + NIGD+ +VRI     ++L GEL+
Sbjct: 411 VADCDRNIGDLARVRIVSSGPNSLAGELI 439


>gi|103487545|ref|YP_617106.1| tRNA-i(6)A37 modification enzyme MiaB [Sphingopyxis alaskensis
           RB2256]
 gi|123379656|sp|Q1GRE9|MIAB_SPHAL RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|98977622|gb|ABF53773.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Sphingopyxis alaskensis
           RB2256]
          Length = 444

 Score =  506 bits (1303), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 248/443 (55%), Positives = 313/443 (70%), Gaps = 10/443 (2%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+ F VKS+GCQMNVYD  RM +M  ++GY       DADL+VLNTCHIREKAAEKVYS 
Sbjct: 6   PKTFHVKSFGCQMNVYDGERMAEMLGAEGYVPAADGADADLVVLNTCHIREKAAEKVYSD 65

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +GR++        +G    + VAGCVAQAEG EI RR+P V+VVVGPQ Y+RLPEL+ RA
Sbjct: 66  IGRLKR------DDGSTPTIAVAGCVAQAEGAEIARRAPSVDVVVGPQAYHRLPELIARA 119

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             G++ +D D   E KF  L    G  N++   TAFLT+QEGCDKFCT+CVVPYTRG EI
Sbjct: 120 ERGEKAIDLDMPAESKFGALPKRSG--NQR--PTAFLTVQEGCDKFCTYCVVPYTRGAEI 175

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR  + ++ EAR L+  GV EITLLGQNVNAW G+   G       L+  L++  GL R+
Sbjct: 176 SRPFADLIAEARALVAGGVREITLLGQNVNAWIGEDAKGRAIGLDGLIRELAKEDGLERI 235

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           RYTTSHP DM+D LI AHG++D LMP+LHLPVQ+GSDRIL +MNR H+   Y ++I+R+R
Sbjct: 236 RYTTSHPNDMTDGLIVAHGEVDKLMPFLHLPVQAGSDRILAAMNRSHSVESYLKVIERVR 295

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
             RPDIAIS DFIVGFPGE++ DF AT+D+V    YA A+SFKYS R GTP + M +Q+D
Sbjct: 296 EARPDIAISGDFIVGFPGESEADFAATLDIVRATRYAMAYSFKYSRRPGTPAATMDDQID 355

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
           E V  ERL  LQ  L EQQ +FN+A VG+   +L+E+ GK +G+L+G+SPWLQSV + + 
Sbjct: 356 EAVMNERLQRLQALLNEQQQAFNEATVGRTTRLLLERKGKREGQLIGKSPWLQSVHVTAP 415

Query: 444 NHNIGDIIKVRITDVKISTLYGE 466
              IGD+I VRIT    ++L  E
Sbjct: 416 GLAIGDMIDVRITSAGPNSLGAE 438


>gi|182678041|ref|YP_001832187.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Beijerinckia
           indica subsp. indica ATCC 9039]
 gi|229890430|sp|B2IIK5|MIAB_BEII9 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|182633924|gb|ACB94698.1| RNA modification enzyme, MiaB family [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 510

 Score =  506 bits (1302), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 235/452 (51%), Positives = 324/452 (71%), Gaps = 1/452 (0%)

Query: 19  DQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAE 78
           D  +  ++ FVKSYGCQMNVYD+ RM D+   +GY   ++ +DADL++LNTCHIRE AAE
Sbjct: 28  DPLVNTRKLFVKSYGCQMNVYDAERMADLLAPEGYAETSAPEDADLVILNTCHIREHAAE 87

Query: 79  KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPE 138
           KV+S LG++R LK  +   G  + +VVAGCVAQAEGEEILRR   V++VVGPQ+Y+RLP+
Sbjct: 88  KVFSELGKLRLLKAEQQAAGRPVKIVVAGCVAQAEGEEILRRQKAVDLVVGPQSYHRLPD 147

Query: 139 LLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
           LL R      +VDT++  EDKF+ L         +RGV AF+T+QEGCDKFC+FCVVPYT
Sbjct: 148 LLRRVAHTPGLVDTEFPAEDKFDHLVAPQPEKIAERGVGAFVTVQEGCDKFCSFCVVPYT 207

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG-KGLDGEKCTFSDLLYSLSEI 257
           RG E SR +  ++ E   LI +GV E+TL+GQNVNA+ G   + G   + + L+  ++ +
Sbjct: 208 RGAETSRPVEAILAEVETLIASGVREVTLIGQNVNAYHGFDAMTGAPASLASLMARVAAM 267

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
            GL+R+RYTTSHP DM + LI AH D+  LMP+LHLPVQSGSD+IL +MNRRH A +Y +
Sbjct: 268 PGLLRIRYTTSHPNDMGEDLIAAHRDIPALMPFLHLPVQSGSDKILAAMNRRHKAGDYLE 327

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
           +I  IR+ RPDIA+SSDFIVGFPGET+ DF AT+ L++++G+A AFSFKYS R GTPG++
Sbjct: 328 LIASIRAARPDIALSSDFIVGFPGETEADFEATLALIEQVGFASAFSFKYSQRPGTPGAD 387

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQS 437
             +Q+DE+VKA+RL  LQ  L EQ+ +FN A +G+++ VL EK G+  G++ G++P+LQ+
Sbjct: 388 RPDQIDEDVKAQRLARLQALLEEQRQAFNKAMIGRVLPVLFEKPGRHPGQIAGKTPYLQA 447

Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
           +        IG +  V I +   ++ +G L+ 
Sbjct: 448 LYAEGDKALIGTVQPVEILEAGPNSFHGRLLA 479


>gi|299133384|ref|ZP_07026579.1| RNA modification enzyme, MiaB family [Afipia sp. 1NLS2]
 gi|298593521|gb|EFI53721.1| RNA modification enzyme, MiaB family [Afipia sp. 1NLS2]
          Length = 476

 Score =  506 bits (1302), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 233/450 (51%), Positives = 319/450 (70%), Gaps = 5/450 (1%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P++  +KSYGCQMNVYD+ RM D    +G+      ++ADL++LNTCHIREKA+EKV+S 
Sbjct: 4   PRKLHIKSYGCQMNVYDAQRMVDTLAPEGFVETADANEADLVILNTCHIREKASEKVFSE 63

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR+R +K    +EG ++ + VAGCVAQAEG EI RR+  V+VVVGPQ+Y+ LP+LL +A
Sbjct: 64  LGRLRVMKEEAAREGREMKIAVAGCVAQAEGAEITRRASTVDVVVGPQSYHNLPKLLAKA 123

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           R G   ++T++ ++DKF  L        R RG+++F+T+QEGCDKFCTFCVVPYTRG+E+
Sbjct: 124 RTGAPTIETEFPIQDKFSSLPAPKPAAIRARGISSFVTVQEGCDKFCTFCVVPYTRGMEV 183

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR ++ +VD+ ++L DNGV EITL+GQNVNA+ G+G  G+  +   LL+ L+ + G+VRL
Sbjct: 184 SRPVAAIVDDVKRLADNGVREITLIGQNVNAYHGEGASGQAWSLGRLLHHLASVPGIVRL 243

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           RY+TSHPRD+ D LI+AH D+  +MP++HLPVQSGSDRIL +MNR+H A +Y + I+R R
Sbjct: 244 RYSTSHPRDVDDSLIEAHRDIPAVMPFVHLPVQSGSDRILAAMNRKHAAADYIRTIERFR 303

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE--- 380
              P IA SSDFIVGFPGET+ DF  T+ LV +I YA A+SFKYSPR GTP ++M E   
Sbjct: 304 KASPKIAFSSDFIVGFPGETEQDFSDTLALVTQISYAGAYSFKYSPRPGTPAADMQETDT 363

Query: 381 --QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSV 438
              V   V  ERL  LQ  +  QQ SFN A +GQ +EVL E+  +E G++VGR+ +LQ  
Sbjct: 364 ALAVPAAVMDERLARLQGLIDAQQASFNRAAIGQTVEVLFERAAREPGQIVGRTAYLQPA 423

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            + +    IG ++ V I  ++  +L G L 
Sbjct: 424 HVMAPADIIGQVLPVTIDSLERYSLKGRLA 453


>gi|157829079|ref|YP_001495321.1| hypothetical protein A1G_06820 [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|165933804|ref|YP_001650593.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Rickettsia
           rickettsii str. Iowa]
 gi|229890634|sp|B0BVC7|MIAB_RICRO RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|229890635|sp|A8GTT8|MIAB_RICRS RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|157801560|gb|ABV76813.1| hypothetical protein A1G_06820 [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|165908891|gb|ABY73187.1| tRNA 2-methylthioadenosine synthase [Rickettsia rickettsii str.
           Iowa]
          Length = 445

 Score =  505 bits (1300), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 238/447 (53%), Positives = 338/447 (75%), Gaps = 7/447 (1%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ ++K+YGCQMNVYDS++M+D+ +  GYE   ++++AD+I+LNTCHIREKAAEK YS L
Sbjct: 3   KKLYIKTYGCQMNVYDSIKMQDLLYPFGYEPTENIEEADVIILNTCHIREKAAEKTYSEL 62

Query: 85  GRIRNLKNSRIKEG-GDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           GRI+ L+++R K+G    ++VVAGCVAQAEGEEI  R+P V++VVGPQ+YY LPEL+ + 
Sbjct: 63  GRIKKLQDTRTKQGLSSAIIVVAGCVAQAEGEEIFTRTPYVDIVVGPQSYYNLPELISKV 122

Query: 144 -RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            R  K ++D D+  E KF++L   +  Y   +G +AF+++QEGCDKFCTFCVVPYTRG E
Sbjct: 123 VRHEKHLIDLDFVEEAKFDQLP--EQLY--PQGTSAFISVQEGCDKFCTFCVVPYTRGAE 178

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR++ QV  EA K++ +G  EI LLGQNVNA+ GKG   +  + +DLL  L++I  L R
Sbjct: 179 FSRNVEQVYREALKVVSSGAKEIMLLGQNVNAYHGKGPADKIFSLADLLKHLAQIPNLER 238

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LRYTTSHP DM++ LIK +G    LMP+LHLPVQSGS++ILK+MNR+H    Y  II+R+
Sbjct: 239 LRYTTSHPIDMNNDLIKLYGTEPKLMPFLHLPVQSGSNKILKAMNRKHDREYYFDIINRL 298

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R  RPDI +SSDFIVGFPGETD+DF  T+DLV ++ Y Q +SFKYSPR GTPG+   +Q+
Sbjct: 299 REARPDIVLSSDFIVGFPGETDEDFEDTLDLVRRVKYGQCYSFKYSPRPGTPGATRTDQI 358

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
            E++K+ERL  LQ++L  QQ++FN +CVG  ++VL +++GK   +++G++P++QSV + +
Sbjct: 359 PEHIKSERLTILQQELMAQQLAFNTSCVGSTMKVLFDRNGKFDDQIIGKTPYMQSVYIQN 418

Query: 443 KNHN-IGDIIKVRITDVKISTLYGELV 468
            N + +G II V+IT   +++L GE++
Sbjct: 419 PNKSLLGKIIDVKITKASLNSLTGEIL 445


>gi|34581161|ref|ZP_00142641.1| hypothetical protein [Rickettsia sibirica 246]
 gi|28262546|gb|EAA26050.1| unknown [Rickettsia sibirica 246]
          Length = 445

 Score =  504 bits (1299), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 238/447 (53%), Positives = 337/447 (75%), Gaps = 7/447 (1%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ ++K+YGCQMNVYDS++M+D+ +  GYE   ++++AD+I+LNTCHIREKAAEK YS L
Sbjct: 3   KKLYIKTYGCQMNVYDSVKMQDLLYPFGYEPTENIEEADVIILNTCHIREKAAEKTYSEL 62

Query: 85  GRIRNLKNSRIKEG-GDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           GRI+ L+++R K+G    ++VVAGCVAQAEGEEI  R+P V++VVGPQ+YY LPEL+ + 
Sbjct: 63  GRIKKLQDTRTKQGLSSAIIVVAGCVAQAEGEEIFTRTPYVDIVVGPQSYYNLPELISKV 122

Query: 144 -RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            R  K ++D D+  E KF++L   +  Y   +G +AF+++QEGCDKFCTFCVVPYTRG E
Sbjct: 123 VRHEKHLIDLDFVEEAKFDQLP--EQLY--PQGTSAFISVQEGCDKFCTFCVVPYTRGAE 178

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR++ QV  EA K++ +G  EI LLGQNVNA+ GKG   +  + +DLL  L++I  L R
Sbjct: 179 FSRNVEQVFREALKVVSSGAKEIMLLGQNVNAYHGKGPADKIFSLADLLKHLAQIPNLER 238

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LRYTTSHP DM++ LIK +G    LMP+LHLPVQSGS++ILK+MNR+H    Y  II R+
Sbjct: 239 LRYTTSHPIDMNNDLIKLYGTEPKLMPFLHLPVQSGSNKILKAMNRKHDREYYFDIIHRL 298

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R  RPDI +SSDFIVGFPGETD+DF  T+DLV ++ Y Q +SFKYSPR GTPG+   +Q+
Sbjct: 299 REARPDIVLSSDFIVGFPGETDEDFEGTLDLVRRVKYGQCYSFKYSPRPGTPGATRTDQI 358

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
            E++K+ERL  LQ++L  QQ++FN +CVG  ++VL +++GK   +++G++P++QSV + +
Sbjct: 359 PEHIKSERLTILQQELMAQQLAFNTSCVGSTMKVLFDRNGKFDDQIIGKTPYMQSVYIQN 418

Query: 443 KNHN-IGDIIKVRITDVKISTLYGELV 468
            N + +G II V+IT   +++L GE++
Sbjct: 419 PNKSLLGKIIDVKITKASLNSLTGEIL 445


>gi|229587170|ref|YP_002845671.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Rickettsia
           africae ESF-5]
 gi|228022220|gb|ACP53928.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Rickettsia africae ESF-5]
          Length = 445

 Score =  504 bits (1299), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 238/447 (53%), Positives = 338/447 (75%), Gaps = 7/447 (1%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ ++K+YGCQMNVYDS++M+D+ +  GYE   ++++AD+I+LNTCHIREKAAEK YS L
Sbjct: 3   KKLYIKTYGCQMNVYDSVKMQDLLYPFGYEPTENIEEADVIILNTCHIREKAAEKTYSEL 62

Query: 85  GRIRNLKNSRIKEG-GDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           GRI+ L+++R K+G    ++VVAGCVAQAEGEEI  R+P V++VVGPQ+YY LPEL+ + 
Sbjct: 63  GRIKKLQDTRTKQGLSSAIIVVAGCVAQAEGEEIFTRTPYVDIVVGPQSYYNLPELISKV 122

Query: 144 -RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            R  K ++D D+  E KF++L   +  Y   +G +AF+++QEGCDKFCTFCVVPYTRG E
Sbjct: 123 VRHEKHLIDLDFVEEAKFDQLP--EQLY--PQGTSAFISVQEGCDKFCTFCVVPYTRGAE 178

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR++ QV  EA K++ +G  EI LLGQNVNA+ GKG   +  + +DLL  L++I  L R
Sbjct: 179 FSRNVEQVYREALKVVSSGAKEIMLLGQNVNAYHGKGPADKIFSLADLLKHLAQIPNLER 238

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LRYTTSHP DM++ LIK +G    LMP+LHLPVQSGS++ILK+MNR+H    Y  II+R+
Sbjct: 239 LRYTTSHPIDMNNDLIKLYGTEPKLMPFLHLPVQSGSNKILKAMNRKHDREYYFDIINRL 298

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R  RPDI +SSDFIVGFPGETD+DF  T+DLV ++ Y Q +SFKYSPR GTPG+   +Q+
Sbjct: 299 REARPDIVLSSDFIVGFPGETDEDFEDTLDLVRRVKYGQCYSFKYSPRPGTPGATRTDQI 358

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
            E++K+ERL  LQ++L  QQ++FN +CVG  ++VL +++GK   +++G++P++QSV + +
Sbjct: 359 PEHIKSERLTILQQELMAQQLAFNTSCVGSTMKVLFDRNGKFDDQIIGKTPYMQSVYIQN 418

Query: 443 KNHN-IGDIIKVRITDVKISTLYGELV 468
            N + +G II V+IT   +++L GE++
Sbjct: 419 PNKSLLGKIIDVKITKASLNSLTGEIL 445


>gi|192288883|ref|YP_001989488.1| (dimethylallyl)adenosine tRNA methylthiotransferase
           [Rhodopseudomonas palustris TIE-1]
 gi|229890627|sp|B3QAC6|MIAB_RHOPT RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|192282632|gb|ACE99012.1| RNA modification enzyme, MiaB family [Rhodopseudomonas palustris
           TIE-1]
          Length = 463

 Score =  504 bits (1299), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 240/445 (53%), Positives = 328/445 (73%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P++  +KSYGCQMNVYD+ RM D    +G+    ++DDADL++LNTCHIREKA+EKVYS 
Sbjct: 4   PRKLHIKSYGCQMNVYDAQRMVDALAPEGFVETANVDDADLVILNTCHIREKASEKVYSE 63

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR+R  ++     G  + + VAGCVAQAEGEEI+RR+P+V+VVVGPQ+Y+ LP+LL +A
Sbjct: 64  LGRLRVARDEAANHGRRMQIAVAGCVAQAEGEEIIRRAPVVDVVVGPQSYHNLPQLLAKA 123

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
               R ++T++ +EDKF  L        R RG++AF+T+QEGCDKFCTFCVVPYTRG E+
Sbjct: 124 EQHGRALETEFPIEDKFGVLPQPAPDAIRARGISAFVTVQEGCDKFCTFCVVPYTRGAEM 183

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR +  +V++ ++L +NGV E+TL+GQNVNA+ G G DG   +   L+  L+EI G+VRL
Sbjct: 184 SRPVVAIVEDVKRLAENGVREVTLIGQNVNAYHGDGPDGRAWSLGRLVRRLAEIPGIVRL 243

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           RY+TSHP D+ D L+ AH DL  LMP++HLPVQSGSDRIL +MNR+HTA +YR++IDR R
Sbjct: 244 RYSTSHPNDVDDDLLAAHRDLPALMPFVHLPVQSGSDRILAAMNRKHTADDYRRVIDRFR 303

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           S    IA SSDFIVGFPGET+ DF AT+ LV +IGYA A+SFKYSPR GTP ++M+E V 
Sbjct: 304 SASETIAFSSDFIVGFPGETERDFSATLALVAQIGYAGAYSFKYSPRPGTPAADMVEMVP 363

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
             V  ERL  LQ+ + +QQ +FN A +G+ +EVL E+ G++ G++VGR+ +LQ   + + 
Sbjct: 364 AAVMDERLEQLQQLIDQQQSAFNKAAIGRTVEVLFERAGRKPGQIVGRTAYLQPAHVMAP 423

Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468
           +  IG ++ VR+  ++  +L GEL 
Sbjct: 424 DSIIGKVLPVRVDSLERYSLLGELA 448


>gi|85709129|ref|ZP_01040195.1| 2-methylthioadenine synthetase [Erythrobacter sp. NAP1]
 gi|85690663|gb|EAQ30666.1| 2-methylthioadenine synthetase [Erythrobacter sp. NAP1]
          Length = 455

 Score =  504 bits (1298), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 243/463 (52%), Positives = 322/463 (69%), Gaps = 10/463 (2%)

Query: 5   IKLIGVAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADL 64
           +K   VA     I+     P+ + VKS+GCQMNVYD  RM ++   +G       +DADL
Sbjct: 1   MKWREVAGKAPPIMKPQTPPKTYRVKSFGCQMNVYDGERMGELLAEKGITPAPEGEDADL 60

Query: 65  IVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIV 124
           +VLNTCHIREKAAEK+YS +GR+   K          ++ VAGCVAQAEGEEI+ R+P V
Sbjct: 61  VVLNTCHIREKAAEKIYSDIGRLTKGKTQEKAP----MIAVAGCVAQAEGEEIMARAPAV 116

Query: 125 NVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQE 184
           ++VVGPQ Y+RLP++L++A  G+R  DTD     KF+ L        ++R  TAFLT+QE
Sbjct: 117 SMVVGPQAYHRLPDMLDKAVAGERATDTDMPAIAKFDSLP-----KRKRRSPTAFLTVQE 171

Query: 185 GCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK 244
           GCDKFCT+CVVPYTRG EISR  S ++DEARKLI+ G  EITLLGQNVNAW G+   G  
Sbjct: 172 GCDKFCTYCVVPYTRGAEISRPYSDLIDEARKLIEAGAREITLLGQNVNAWSGEDEKGRS 231

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304
                L+++L+E+ GL R+RYTTSHP DM D LI+AHG  D LMPYLHLPVQSG+DR+LK
Sbjct: 232 VGLGQLIHALAELDGLERIRYTTSHPNDMDDALIEAHGTCDKLMPYLHLPVQSGNDRVLK 291

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
           +MNR HTA  Y ++++R R+VRPDIA+S DFIVGFPGET+ +F  T+ LVD++ Y+QAFS
Sbjct: 292 AMNRSHTAESYLKLLERFRTVRPDIALSGDFIVGFPGETEAEFEDTLKLVDEVRYSQAFS 351

Query: 365 FKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE 424
           FKYSPR GTP + M  Q+ + +  ERL  LQ +L   Q++FN+  VG+   VL+E+ GK 
Sbjct: 352 FKYSPRPGTPAATMDNQIAKELMDERLQRLQARLNRDQLAFNEGLVGKTCTVLVERKGKH 411

Query: 425 KGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
            G+ +G+SPWL SV     +  IGD+++VR+ +   +++ G L
Sbjct: 412 PGQWLGKSPWLTSVWFEG-DAQIGDLVEVRLVEAGPNSIEGLL 453


>gi|295687475|ref|YP_003591168.1| MiaB family RNA modification enzyme [Caulobacter segnis ATCC 21756]
 gi|295429378|gb|ADG08550.1| RNA modification enzyme, MiaB family [Caulobacter segnis ATCC
           21756]
          Length = 448

 Score =  504 bits (1298), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 255/448 (56%), Positives = 322/448 (71%), Gaps = 13/448 (2%)

Query: 23  VPQ-RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
            PQ R F+K+YGCQMNVYDS RM D+    GY  V+  + ADL+VLNTCHIREKA EKVY
Sbjct: 4   TPQKRLFIKTYGCQMNVYDSERMADVLRPLGYGVVDDPEGADLVVLNTCHIREKATEKVY 63

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S LG I+ +K+ + + GG + + VAGCVAQAEG+EI+ R   V++VVGPQ Y++LPEL+ 
Sbjct: 64  SELGYIKQMKDRKAEAGGRMTIAVAGCVAQAEGKEIMHRQKAVDLVVGPQAYHQLPELIA 123

Query: 142 RAR--FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           RA    G+R+   D++ ++KF+ L           GVTAFLT+QEGCDKFCTFCVVPYTR
Sbjct: 124 RAHRATGERLA-ADFAADEKFDALP----AERHVTGVTAFLTVQEGCDKFCTFCVVPYTR 178

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G E SR ++ +V+EA++L D GV E+TLLGQNVNA+     DG+  T + L+  L+ I G
Sbjct: 179 GGEWSRPVNDIVEEAKRLADQGVREVTLLGQNVNAY-----DGDGSTLAKLVRQLARIDG 233

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           L R+RYTTSHPRDM D LI+AHG+L  LMPYLHLPVQ+G DRILK+MNR HTA  Y ++I
Sbjct: 234 LDRIRYTTSHPRDMGDDLIEAHGELPELMPYLHLPVQAGGDRILKAMNRDHTAESYVRLI 293

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
           +RIR+ RPDIA+S DFIVGFPGE D DF  T+DLV ++G+A AFSFKYS R GTP S M 
Sbjct: 294 ERIRAARPDIAMSGDFIVGFPGERDGDFEKTLDLVREVGFASAFSFKYSRRPGTPASAMP 353

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV 439
            QV+E VKAERL  L + L EQQ +FN A VG+++ VL EK G+  G++VGRSP+LQ+V 
Sbjct: 354 GQVEEEVKAERLERLNQLLDEQQRAFNAAQVGKVLPVLFEKPGRHAGQIVGRSPYLQAVH 413

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGEL 467
                  IG I+ VRI      +L G L
Sbjct: 414 CEGGEQLIGKIVPVRIESAAKMSLGGAL 441


>gi|217979028|ref|YP_002363175.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Methylocella
           silvestris BL2]
 gi|217504404|gb|ACK51813.1| RNA modification enzyme, MiaB family [Methylocella silvestris BL2]
          Length = 490

 Score =  504 bits (1297), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 245/444 (55%), Positives = 319/444 (71%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ FV+S+GCQMNVYDS +M D+   +GY      +DADLI+LNTCHIRE+A+EK++S L
Sbjct: 28  RKLFVQSFGCQMNVYDSQKMTDLLGREGYGAAAGPEDADLIILNTCHIRERASEKIFSEL 87

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR+R LK  R  EG    +VVAGCVAQAEG EI RR   V+VVVGPQ+Y+RLPELL RA 
Sbjct: 88  GRLRELKALRAVEGRKTKIVVAGCVAQAEGAEIHRRQSAVDVVVGPQSYHRLPELLRRAE 147

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
             K VVDTD+ VEDKF  L+       RKRGV+AF+T+QEGCDKFCTFCVVPYTRG E S
Sbjct: 148 REKHVVDTDFPVEDKFGFLARPTPAETRKRGVSAFVTVQEGCDKFCTFCVVPYTRGAEFS 207

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R ++ +++EA  L   GV E+TL+GQNVNA+ G    G +   + L   L+   G+ R+R
Sbjct: 208 RPVAAILEEAAALTAAGVRELTLIGQNVNAYHGADGRGGEADLAALCAELARASGVKRIR 267

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           YTTSHP DM + LI+AH     LMP+LHLPVQSGSD +L +MNR+HT+  Y  +  RIR+
Sbjct: 268 YTTSHPNDMGEALIEAHRAQPKLMPFLHLPVQSGSDAVLAAMNRKHTSAGYIALCRRIRA 327

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
            RPDIA+SSDFIVGFPGETD DF AT+ L++ +GYA AFSFKYSPR GTPG+   +Q+ E
Sbjct: 328 ARPDIALSSDFIVGFPGETDADFEATLQLIEDVGYASAFSFKYSPRPGTPGAERTDQIAE 387

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
           +VK+ERL  LQ  +  Q+ +FN A VG+ +EVLIE+ G+  G++ G+SP+LQ+V L   +
Sbjct: 388 DVKSERLARLQALIESQRQAFNRAMVGRTVEVLIERRGRHPGQIAGKSPYLQAVQLEGGD 447

Query: 445 HNIGDIIKVRITDVKISTLYGELV 468
             IG+ + V I     ++L+G+L 
Sbjct: 448 ELIGESVAVEIVATGPNSLFGKLA 471


>gi|238650870|ref|YP_002916725.1| tRNA 2-methylthioadenosine synthase [Rickettsia peacockii str.
           Rustic]
 gi|238624968|gb|ACR47674.1| tRNA 2-methylthioadenosine synthase [Rickettsia peacockii str.
           Rustic]
          Length = 445

 Score =  503 bits (1296), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 238/447 (53%), Positives = 337/447 (75%), Gaps = 7/447 (1%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ ++K+YGCQMNVYDS++M+D+ +  GYE   ++++AD+I+LNTCHIREKAAEK YS L
Sbjct: 3   KKLYIKTYGCQMNVYDSVKMQDLLYPFGYEPTENIEEADVIILNTCHIREKAAEKTYSEL 62

Query: 85  GRIRNLKNSRIKEG-GDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           GRI+ L+++R K+G    ++VVAGCVAQAEGEEI  R+P V++VVGPQ+YY LPEL+ + 
Sbjct: 63  GRIKKLQDTRTKQGLSSAIIVVAGCVAQAEGEEIFTRTPYVDIVVGPQSYYNLPELISKV 122

Query: 144 -RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            R  K ++D D+  E KF++L   +  Y   +G +AF+++QEGCDKFCTFCVVPYTRG E
Sbjct: 123 VRHEKHLIDLDFVEEAKFDQLP--EQLY--PQGTSAFISVQEGCDKFCTFCVVPYTRGAE 178

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR++ QV  EA K++ +G  EI LLGQNVNA+ GKG   +  + +DLL  L++I  L R
Sbjct: 179 FSRNVEQVYREALKVVSSGAKEIMLLGQNVNAYHGKGPADKIFSLADLLKHLAQIPNLER 238

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LRYTTSHP DM++ LIK +G    LMP+LHLPVQSGS++ILK+MNR+H    Y  II+R+
Sbjct: 239 LRYTTSHPIDMNNDLIKLYGTEPKLMPFLHLPVQSGSNKILKAMNRKHDREYYFDIINRL 298

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R  RPDI +SSDFIVGFPGETD+DF  T+DLV ++ Y Q +SFKYSPR GTPG+   +Q+
Sbjct: 299 REARPDIVLSSDFIVGFPGETDEDFEDTLDLVRRVKYGQCYSFKYSPRPGTPGATRTDQI 358

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
            E++K+ERL  LQ++L  QQ++FN +CVG  ++VL +++GK   +++G++P++QSV + +
Sbjct: 359 PEHIKSERLTILQQELMAQQLAFNTSCVGSTMKVLFDRNGKFDDQIIGKTPYMQSVYIQN 418

Query: 443 KNHN-IGDIIKVRITDVKISTLYGELV 468
            N + +G II V IT   +++L GE++
Sbjct: 419 PNKSLLGKIIDVNITKASLNSLTGEIL 445


>gi|86136015|ref|ZP_01054594.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Roseobacter sp. MED193]
 gi|85826889|gb|EAQ47085.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Roseobacter sp. MED193]
          Length = 455

 Score =  503 bits (1296), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 246/446 (55%), Positives = 324/446 (72%), Gaps = 9/446 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
            P++ F+K+YGCQMNVYDS RM +    QGY  V S D+AD+I+LNTCHIREKAAEKVYS
Sbjct: 18  APKKLFIKTYGCQMNVYDSERMAEALGGQGYSEVKSADEADMILLNTCHIREKAAEKVYS 77

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            LGR + LK     E  DL + VAGCVAQAEG+EI+RR P+V++VVGPQ+Y+RLPE+ E+
Sbjct: 78  ELGRFKKLK----AEKPDLKIGVAGCVAQAEGQEIMRRQPLVDLVVGPQSYHRLPEMEEK 133

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           AR G++V+DTD+  EDKFE+L          RG TAFLT+QEGCDKFC FCVVPYTRG E
Sbjct: 134 ARAGEKVLDTDFPEEDKFEKLKRRPKA---TRGPTAFLTVQEGCDKFCAFCVVPYTRGAE 190

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR   +++ EAR L++ GV EITLLGQNVNA+ G G +G+  T + L++ L ++ GL R
Sbjct: 191 VSRPADRILTEARDLVERGVREITLLGQNVNAYHGAGANGD-LTLAQLIWELDKVDGLER 249

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP DM D LI+AHG    LMPYLHLPVQ+GSD+ILK MNR HTA  Y ++I+RI
Sbjct: 250 IRFTTSHPNDMMDDLIEAHGTCKKLMPYLHLPVQAGSDKILKRMNRSHTAESYLRLIERI 309

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+ RPDI IS DFIVGFP ET++DF+AT+DLV+++ Y  A+SFKYS R GTP +    QV
Sbjct: 310 RAARPDILISGDFIVGFPEETEEDFQATLDLVEEVKYGTAYSFKYSTRPGTPAAER-PQV 368

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
           +     +RL  LQ  L  QQ    D+ VG+ + VL EK G++ G+++G+S +L +V +  
Sbjct: 369 NPAEADDRLQRLQALLTRQQREIQDSMVGREVGVLFEKPGRQPGQMLGKSDYLHAVHVAD 428

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
            +   GD+ +VRI   + ++L GEL+
Sbjct: 429 CDRKAGDLARVRIVSSRTNSLAGELI 454


>gi|260431178|ref|ZP_05785149.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260415006|gb|EEX08265.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 439

 Score =  503 bits (1295), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 249/448 (55%), Positives = 324/448 (72%), Gaps = 15/448 (3%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P++ ++K+YGCQMNVYDS RM +    QGY    S +DAD+I+LNTCHIREKAAEKVYS 
Sbjct: 4   PKKLYIKTYGCQMNVYDSERMSEALGGQGYVETQSPEDADMILLNTCHIREKAAEKVYSE 63

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK     E  DL + VAGCVAQAEGEEI+RR P+V++VVGPQ+Y+RLPEL  +A
Sbjct: 64  LGRFKGLK----AEKPDLKIGVAGCVAQAEGEEIMRRQPLVDLVVGPQSYHRLPELEAKA 119

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNR---KRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           R G++ +DTD+  EDKFE+L       NR   KRG TAFLT+QEGCDKFC FCVVPYTRG
Sbjct: 120 RAGEKALDTDFPEEDKFEKLK------NRPKAKRGPTAFLTVQEGCDKFCAFCVVPYTRG 173

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR   +++ EA+ L++ GV EITLLGQNVNA+ G G +G+  T + L++ L+ I GL
Sbjct: 174 AEVSRPADRILREAQDLVERGVREITLLGQNVNAYHGAGPNGD-MTLAGLIWELNRIDGL 232

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+TTSHP DM+D LI+AHG  + LMPYLHLPVQSGSDRILK MNR HTA  Y ++I+
Sbjct: 233 ERIRFTTSHPNDMTDDLIEAHGTCEKLMPYLHLPVQSGSDRILKRMNRSHTAESYLRLIE 292

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           RIR  RPDI +S DFIVGFP ET++DF+AT+DLV+++ Y  A+SFKYS R GTP +    
Sbjct: 293 RIREARPDILMSGDFIVGFPEETEEDFQATLDLVEEVRYGYAYSFKYSTRPGTPAAER-P 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440
           QVD     +RL  LQ  +   Q    DA VG+ ++VL EK G+  G++VG+S +L +V +
Sbjct: 352 QVDPQAADDRLQRLQAVITRHQREIQDAMVGRTVKVLFEKPGRLPGQMVGKSEYLHAVHV 411

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
            ++    GD+  VR+T    ++L GEL+
Sbjct: 412 KAEGLGAGDLRSVRVTASGANSLAGELI 439


>gi|221232993|ref|YP_002515429.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Caulobacter
           crescentus NA1000]
 gi|220962165|gb|ACL93521.1| tRNA 2-methylthioadenosine synthase [Caulobacter crescentus NA1000]
          Length = 448

 Score =  503 bits (1294), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 252/448 (56%), Positives = 323/448 (72%), Gaps = 13/448 (2%)

Query: 23  VPQ-RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
            PQ R F+K+YGCQMNVYDS RM D+    GY  V+  + ADL+VLNTCHIREKA EKVY
Sbjct: 4   TPQKRLFIKTYGCQMNVYDSERMADVLRPLGYGVVDEPEGADLVVLNTCHIREKATEKVY 63

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S LG I+ +K+ + + GG + + VAGCVAQAEG+EI+ R   V++VVGPQ Y++LPEL+ 
Sbjct: 64  SELGYIKQMKDRKAEAGGRMTIAVAGCVAQAEGKEIMNRQKAVDLVVGPQAYHQLPELIA 123

Query: 142 RAR--FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           RA    G+R+   D++ ++KF+ L           GVTAFLT+QEGCDKFCTFCVVPYTR
Sbjct: 124 RAHRATGERLA-ADFAADEKFDALP----AERHVTGVTAFLTVQEGCDKFCTFCVVPYTR 178

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G E SR ++ +V+EA++L D GV E+TLLGQNVNA+     DG+  T + L+  L++I G
Sbjct: 179 GGEWSRPVNDIVEEAKRLADQGVREVTLLGQNVNAY-----DGDGSTLAKLVRQLAKIDG 233

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           L R+RYTTSHPRDM D LI+AHG+L  LMPYLHLPVQ+GSD+ILK+MNR HTA  Y ++I
Sbjct: 234 LDRIRYTTSHPRDMGDDLIEAHGELPELMPYLHLPVQAGSDKILKAMNRDHTAESYVKLI 293

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
           ++IR+ RPDIA+S DFIVGFPGE D DF  T++LV ++G+A AFSFKYS R GTP S M 
Sbjct: 294 EKIRAARPDIAMSGDFIVGFPGERDGDFEKTLELVREVGFASAFSFKYSRRPGTPASAMP 353

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV 439
            QVDE VKAERL  L + L EQQ +FN + VG+++ VL EK G+  G++VGRSP+LQ+V 
Sbjct: 354 GQVDEAVKAERLERLNQLLDEQQRAFNASQVGKVLPVLFEKAGRHPGQIVGRSPYLQAVH 413

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGEL 467
                  IG I+ V I      +L G L
Sbjct: 414 AEGGEQLIGTIVPVHIESAAKMSLAGRL 441


>gi|157964955|ref|YP_001499779.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Rickettsia massiliae
           MTU5]
 gi|229890633|sp|A8F2U6|MIAB_RICM5 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|157844731|gb|ABV85232.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Rickettsia massiliae
           MTU5]
          Length = 450

 Score =  503 bits (1294), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 236/451 (52%), Positives = 339/451 (75%), Gaps = 7/451 (1%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           ++ ++ ++K+YGCQMNVYDS++M+D+ +  GYE   ++++A +I+LNTCHIREKAAEK Y
Sbjct: 1   MMSKKLYIKTYGCQMNVYDSVKMQDLLYPFGYEPTENIEEAAVIILNTCHIREKAAEKTY 60

Query: 82  SFLGRIRNLKNSRIKEG-GDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140
           S LGRI+ L+++R K+G    ++VVAGCVAQAEGEEI  R+P V++VVGPQ+YY LPEL+
Sbjct: 61  SELGRIKKLQDTRTKQGLSSAIIVVAGCVAQAEGEEIFTRTPYVDIVVGPQSYYNLPELI 120

Query: 141 ERA-RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
            +  R  K ++D D+  E KF++L   +  Y   +G +AF+++QEGCDKFCTFCVVPYTR
Sbjct: 121 SKVVRHEKHLIDLDFVEEAKFDQLP--EQLY--PQGTSAFISVQEGCDKFCTFCVVPYTR 176

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G E SR++ QV  EA K++ +G  EI LLGQNVNA+ GKG   +  + +DLL  L++I  
Sbjct: 177 GAEFSRNVEQVYREALKVVSSGAKEIMLLGQNVNAYHGKGPADKIFSLADLLKHLAQIPN 236

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           L RLRY TSHP DM+D LIK HG    LMP+LHLPVQSGS++ILK+MNR+H    Y  II
Sbjct: 237 LERLRYITSHPIDMNDDLIKLHGTEPKLMPFLHLPVQSGSNKILKAMNRKHDREYYFDII 296

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
           +R+R  RP I +SSDFIVGFPGETD+DF  T+DLV ++ Y Q +SFKYSPR GTPG+   
Sbjct: 297 NRLREARPAIVLSSDFIVGFPGETDEDFEDTLDLVRRVKYGQCYSFKYSPRPGTPGATKT 356

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV 439
           +Q+ E++K+ERL  LQ++L  QQ++FN++CVG  ++VL +++GK   +++G++P++QSV 
Sbjct: 357 DQIPEHIKSERLTILQQELMAQQLAFNESCVGSTMKVLFDRNGKCDDQIIGKTPYMQSVY 416

Query: 440 LNSKNHN-IGDIIKVRITDVKISTLYGELVV 469
           + + N + +G I+ ++IT   +++L GE++V
Sbjct: 417 IQNPNKSLLGKIVDIKITKASLNSLTGEILV 447


>gi|258542174|ref|YP_003187607.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Acetobacter
           pasteurianus IFO 3283-01]
 gi|256633252|dbj|BAH99227.1| tRNA 2-methylthioadenosine synthase MiaB [Acetobacter pasteurianus
           IFO 3283-01]
 gi|256636311|dbj|BAI02280.1| tRNA 2-methylthioadenosine synthase MiaB [Acetobacter pasteurianus
           IFO 3283-03]
 gi|256639364|dbj|BAI05326.1| tRNA 2-methylthioadenosine synthase MiaB [Acetobacter pasteurianus
           IFO 3283-07]
 gi|256642420|dbj|BAI08375.1| tRNA 2-methylthioadenosine synthase MiaB [Acetobacter pasteurianus
           IFO 3283-22]
 gi|256645475|dbj|BAI11423.1| tRNA 2-methylthioadenosine synthase MiaB [Acetobacter pasteurianus
           IFO 3283-26]
 gi|256648528|dbj|BAI14469.1| tRNA 2-methylthioadenosine synthase MiaB [Acetobacter pasteurianus
           IFO 3283-32]
 gi|256651581|dbj|BAI17515.1| tRNA 2-methylthioadenosine synthase MiaB [Acetobacter pasteurianus
           IFO 3283-01-42C]
 gi|256654572|dbj|BAI20499.1| tRNA 2-methylthioadenosine synthase MiaB [Acetobacter pasteurianus
           IFO 3283-12]
          Length = 472

 Score =  502 bits (1293), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 246/442 (55%), Positives = 315/442 (71%), Gaps = 2/442 (0%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
             V ++GCQMNVYDS RM D+    GY+ V + D AD+I+LNTCHIR+KAAEKV+S LGR
Sbjct: 25  LHVITWGCQMNVYDSARMGDVLRPLGYQPVATPDTADMIILNTCHIRDKAAEKVFSELGR 84

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           +R +K +R   G   ++ VAGCVAQAEG+EIL R+P V++V+GPQTY+RLPE++ RA   
Sbjct: 85  LRKIKEARETSGQHTIIAVAGCVAQAEGQEILARAPYVDIVLGPQTYHRLPEMVARAARA 144

Query: 147 KRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
               ++TD+  E KF+ L   +         TAFLTIQEGCDKFC+FCVVPYTRG E SR
Sbjct: 145 GGAVIETDFPAEQKFDFLPEAEAPQTAGN-YTAFLTIQEGCDKFCSFCVVPYTRGAESSR 203

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           S+  V+ EAR+++++GV +I LLGQNVNA+ G+G DG       L Y L+++ GL R+RY
Sbjct: 204 SVLSVLAEARRMVESGVKDICLLGQNVNAYHGEGPDGSTWDLPQLAYELAKLPGLSRIRY 263

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
            TSHPRDM+D LI AH DL  LMP+LHLPVQ+GSDRIL++MNR HTA EYR I+ R+R  
Sbjct: 264 MTSHPRDMNDALIAAHRDLPQLMPFLHLPVQAGSDRILRAMNRGHTADEYRDIVRRLREA 323

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
           RPD+A+SSDFIVG PGETD+DF ATM LV  +G+A A+SFKYSPR GTP +    QV E+
Sbjct: 324 RPDLALSSDFIVGHPGETDEDFEATMQLVRDVGFALAYSFKYSPRPGTPAAGAGMQVPED 383

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445
           VK  RL  LQ  LREQQ +FN   VG+ I VL    G++ G++ GRSPWLQ V ++   H
Sbjct: 384 VKDARLQALQALLREQQDAFNATLVGKTIPVLFTSEGRKPGQIAGRSPWLQPVHVSGPKH 443

Query: 446 NIGDIIKVRITDVKISTLYGEL 467
            IG  + VRI +   ++L G L
Sbjct: 444 LIGKELPVRIVERLTNSLSGVL 465


>gi|15893169|ref|NP_360883.1| hypothetical protein RC1246 [Rickettsia conorii str. Malish 7]
 gi|81527850|sp|Q92G77|MIAB_RICCN RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|15620380|gb|AAL03784.1| unknown [Rickettsia conorii str. Malish 7]
          Length = 445

 Score =  502 bits (1293), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 237/447 (53%), Positives = 337/447 (75%), Gaps = 7/447 (1%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ ++K+YGCQMNVYDS++M+D+ +  GYE   ++++AD+I+LNTCHIREKAAEK YS L
Sbjct: 3   KKLYIKTYGCQMNVYDSVKMQDLLYPFGYEPTENIEEADVIILNTCHIREKAAEKTYSEL 62

Query: 85  GRIRNLKNSRIKEG-GDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           GRI+ L+++R K+G    ++VVAGCVAQAEGEEI  R+P V++VVGPQ+YY LPEL+ + 
Sbjct: 63  GRIKKLQDTRTKQGLSSAIIVVAGCVAQAEGEEIFTRTPYVDIVVGPQSYYNLPELISKV 122

Query: 144 -RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            R  K ++D D+  E KF++L   +  Y   +G +AF+++QEGCDKFCTFCVVPYTRG E
Sbjct: 123 VRHEKHLIDLDFVEEAKFDQLP--EQLY--PQGTSAFISVQEGCDKFCTFCVVPYTRGAE 178

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR++ QV  EA K++ +G  EI LLGQNVNA+ GKG   +  + +DLL  L++I  L R
Sbjct: 179 FSRNVEQVYREALKVVSSGAKEIMLLGQNVNAYHGKGPADKIFSLADLLKHLAQIPNLER 238

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LRYTTSHP DM++ LIK +G    LMP+LHLPVQSGS++ILK+MNR+H    Y  II+R+
Sbjct: 239 LRYTTSHPIDMNNDLIKLYGTEPKLMPFLHLPVQSGSNKILKAMNRKHDREYYFDIINRL 298

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R  RPDI +SSDFIVGFPGETD+DF  T+DLV ++ Y Q +SFKYSPR GTPG+   +Q+
Sbjct: 299 REARPDIVLSSDFIVGFPGETDEDFEDTLDLVRRVKYGQCYSFKYSPRPGTPGATRTDQI 358

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
            E++K+ERL  LQ++L  QQ++FN +CVG  ++VL +++GK   +++G++P++QSV + +
Sbjct: 359 PEHIKSERLTILQQELMAQQLAFNTSCVGSTMKVLFDRNGKFDDQIIGKTPYMQSVYIQN 418

Query: 443 KNHN-IGDIIKVRITDVKISTLYGELV 468
            N + +G I  V+IT   +++L GE++
Sbjct: 419 PNKSLLGKISDVKITKASLNSLTGEIL 445


>gi|91204926|ref|YP_537281.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Rickettsia bellii
           RML369-C]
 gi|122426084|sp|Q1RKC2|MIAB_RICBR RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|91068470|gb|ABE04192.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Rickettsia bellii
           RML369-C]
          Length = 446

 Score =  502 bits (1292), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 239/446 (53%), Positives = 334/446 (74%), Gaps = 7/446 (1%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ ++K+YGCQMNVYDS++M+D+ +  GYE   ++++AD+I+LNTCHIREKAAEK YS L
Sbjct: 3   KKLYIKTYGCQMNVYDSVKMQDLLYPYGYEPTENIEEADVIILNTCHIREKAAEKTYSEL 62

Query: 85  GRIRNLKNSRIKEG-GDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           GRI+ L+++R K+G    ++VVAGCVAQAEGEEI  R+P V++VVGPQ+YY LPEL+ + 
Sbjct: 63  GRIKKLQDARKKQGLNSAIIVVAGCVAQAEGEEIFTRTPYVDIVVGPQSYYNLPELISKV 122

Query: 144 -RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            R  K ++D D+  E KF++L   +  Y   +G ++F+++QEGCDKFCTFCVVPYTRG E
Sbjct: 123 VRHEKHLIDLDFVEEAKFDQLP--EQLY--PQGASSFISVQEGCDKFCTFCVVPYTRGAE 178

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR++ QV  EA K++ +G  EI LLGQNVNA+ GK  D +  T +DL+  L +I  L R
Sbjct: 179 FSRNVEQVYREALKIVSSGAKEIMLLGQNVNAYHGKTSDDKVFTLADLIRHLVKIPNLER 238

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LRYTTSHP DM+D LI  HG    LMP+LHLPVQSGS++ LK+MNR+H    Y  IIDR+
Sbjct: 239 LRYTTSHPIDMTDDLISLHGLEPKLMPFLHLPVQSGSNKTLKAMNRKHDRDYYFDIIDRL 298

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R  R DI +SSDFIVGFPGETD+DF  T+DLV K+ Y Q +SFKYSPR GTPG+   +QV
Sbjct: 299 RKARADIVLSSDFIVGFPGETDEDFADTLDLVRKVKYGQCYSFKYSPRPGTPGATRTDQV 358

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
            E++K+ERL  LQK+L  QQ++FN++C+G  ++VL ++ GK   +++G++P++QSV + +
Sbjct: 359 PEHIKSERLTILQKELAAQQLAFNESCIGSTMKVLFDRDGKFDDQIIGKTPYMQSVYIKN 418

Query: 443 KNHN-IGDIIKVRITDVKISTLYGEL 467
            N + +G II+V+IT   +++L GE+
Sbjct: 419 PNKDLLGKIIEVKITKAALNSLSGEI 444


>gi|157827747|ref|YP_001496811.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Rickettsia bellii OSU
           85-389]
 gi|229890631|sp|A8GY24|MIAB_RICB8 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|157803051|gb|ABV79774.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Rickettsia bellii OSU
           85-389]
          Length = 446

 Score =  501 bits (1291), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 239/446 (53%), Positives = 334/446 (74%), Gaps = 7/446 (1%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ ++K+YGCQMNVYDS++M+D+ +  GYE   ++++AD+I+LNTCHIREKAAEK YS L
Sbjct: 3   KKLYIKTYGCQMNVYDSVKMQDLLYPYGYEPTENIEEADVIILNTCHIREKAAEKTYSEL 62

Query: 85  GRIRNLKNSRIKEG-GDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           GRI+ L+++R K+G    ++VVAGCVAQAEGEEI  R+P V++VVGPQ+YY LPEL+ + 
Sbjct: 63  GRIKKLQDARKKQGLNSAIIVVAGCVAQAEGEEIFTRTPYVDIVVGPQSYYNLPELISKV 122

Query: 144 -RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            R  K ++D D+  E KF++L   +  Y   +G ++F+++QEGCDKFCTFCVVPYTRG E
Sbjct: 123 VRHEKHLIDLDFVEEAKFDQLP--EQLY--PQGASSFISVQEGCDKFCTFCVVPYTRGAE 178

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR++ QV  EA K++ +G  EI LLGQNVNA+ GK  D +  T +DL+  L +I  L R
Sbjct: 179 FSRNVEQVYREALKVVSSGAKEIMLLGQNVNAYHGKTSDDKVFTLADLIRHLVKIPNLER 238

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LRYTTSHP DM+D LI  HG    LMP+LHLPVQSGS++ LK+MNR+H    Y  IIDR+
Sbjct: 239 LRYTTSHPIDMTDDLISLHGLEPKLMPFLHLPVQSGSNKTLKAMNRKHDRDYYFDIIDRL 298

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R  R DI +SSDFIVGFPGETD+DF  T+DLV K+ Y Q +SFKYSPR GTPG+   +QV
Sbjct: 299 RKARADIVLSSDFIVGFPGETDEDFADTLDLVRKVKYGQCYSFKYSPRPGTPGATRTDQV 358

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
            E++K+ERL  LQK+L  QQ++FN++C+G  ++VL ++ GK   +++G++P++QSV + +
Sbjct: 359 PEHIKSERLTILQKELAAQQLAFNESCIGSTMKVLFDRDGKFDDQIIGKTPYMQSVYIKN 418

Query: 443 KNHN-IGDIIKVRITDVKISTLYGEL 467
            N + +G II+V+IT   +++L GE+
Sbjct: 419 PNKDLLGKIIEVKITKAALNSLSGEI 444


>gi|83944995|ref|ZP_00957361.1| hypothetical protein OA2633_10209 [Oceanicaulis alexandrii
           HTCC2633]
 gi|83851777|gb|EAP89632.1| hypothetical protein OA2633_10209 [Oceanicaulis alexandrii
           HTCC2633]
          Length = 468

 Score =  501 bits (1291), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 248/450 (55%), Positives = 313/450 (69%), Gaps = 8/450 (1%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +R F+K+YGCQMNVYDS RM D+    GYE  +  D ADL++LNTCHIREKAAEKVYS L
Sbjct: 16  KRLFIKTYGCQMNVYDSERMRDVLAPLGYEPADEPDGADLVILNTCHIREKAAEKVYSEL 75

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA- 143
           GR++ LK  +   G  + + VAGCVAQAEG EI RR+P+V++VVGPQTY++LPEL+    
Sbjct: 76  GRLKTLKEEKASTGKPMTITVAGCVAQAEGAEIQRRAPVVDLVVGPQTYHKLPELIANVH 135

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           R     +DT++ VE+KF+ L+  +   +   G TAF+T+QEGCDKFCTFCVVPYTRG E 
Sbjct: 136 RERGEALDTEFEVEEKFDALATPERHVD---GFTAFVTVQEGCDKFCTFCVVPYTRGAEW 192

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK----CTFSDLLYSLSEIKG 259
           SR + Q+V E R L   GV E+TLLGQNVNA+ G+   G+          L+  L++I G
Sbjct: 193 SRPVDQIVAEVRALAAKGVREVTLLGQNVNAFHGEAPKGDPEGGVWGLGRLVRHLAKIGG 252

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           + R+R+TTSHP+DM D LI+A  D   LMPY HLPVQ+GSD+ILKSMNR HTA EY  II
Sbjct: 253 IERIRFTTSHPKDMDDDLIQAFADEPKLMPYFHLPVQAGSDKILKSMNRSHTAAEYLDII 312

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            R+R+ RPDIAIS D IVGFPGET+ DF ATM+LV ++ YA  FSFKYS R GTPG+ M 
Sbjct: 313 ARLRAARPDIAISGDMIVGFPGETEADFEATMELVRQVNYASCFSFKYSKRPGTPGAAMF 372

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV 439
            Q+DE VK ERL  LQ  L EQQV+FN + +G+ + VL E+ G+ +G+L GRSP+LQ+V 
Sbjct: 373 NQIDETVKGERLARLQALLTEQQVAFNQSMIGKTLPVLFEREGRFEGQLSGRSPYLQAVH 432

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELVV 469
                  IG I  V IT    + L G L  
Sbjct: 433 CEGPVELIGQIANVEITGATKNALSGRLAT 462


>gi|254467232|ref|ZP_05080643.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Rhodobacterales bacterium
           Y4I]
 gi|206688140|gb|EDZ48622.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Rhodobacterales bacterium
           Y4I]
          Length = 440

 Score =  501 bits (1291), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 249/449 (55%), Positives = 323/449 (71%), Gaps = 15/449 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
            P++ F+K+YGCQMNVYDS RM +    +GY    S DDAD+I+LNTCHIREKAAEKVYS
Sbjct: 3   APKKLFIKTYGCQMNVYDSERMAEALGGEGYVETKSADDADMILLNTCHIREKAAEKVYS 62

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            LGR + LK  +     DL + VAGCVAQAEGEEI+RR P+V++VVGPQ+Y+RLPE+  +
Sbjct: 63  ELGRFKGLKAQKP----DLKIGVAGCVAQAEGEEIMRRQPLVDLVVGPQSYHRLPEMEAK 118

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNR---KRGVTAFLTIQEGCDKFCTFCVVPYTR 199
            R G++V+DTD+  EDKFE+L       NR   KRG TAFLT+QEGCDKFC FCVVPYTR
Sbjct: 119 TRAGQKVLDTDFPEEDKFEKLK------NRPKAKRGPTAFLTVQEGCDKFCAFCVVPYTR 172

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G E+SR   +++ EA+ L++ GV EITLLGQNVNA+ G G +G+  T + L++ L +I G
Sbjct: 173 GAEVSRPADRILREAQDLVERGVREITLLGQNVNAYHGAGPNGD-LTLAQLIWELDKIDG 231

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           L R+R+TTSHP DM D LI+AHG    LMPYLHLPVQ+GSD+ILK MNR HTA  Y ++I
Sbjct: 232 LERIRFTTSHPNDMQDDLIEAHGTCAKLMPYLHLPVQAGSDKILKRMNRSHTAESYIRLI 291

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
           +RIR+ RPDI IS DFIVGFP ET++DF+ATMDLV+++ Y  A+SFKYS R GTP +   
Sbjct: 292 ERIRAARPDILISGDFIVGFPEETEEDFQATMDLVEEVKYGTAYSFKYSTRPGTPAAERA 351

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV 439
            QVD     +RL  LQ  L  QQ    D+ VG+ + VL EK G+  G++VG+S +L +V 
Sbjct: 352 -QVDPAAADDRLQRLQALLTRQQREVQDSMVGREVGVLFEKPGRLPGQMVGKSDYLHAVH 410

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
           +   N + G++ +VRI     ++L GEL+
Sbjct: 411 VADCNRDAGELARVRIVSSGANSLAGELI 439


>gi|126736946|ref|ZP_01752681.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Roseobacter sp.
           SK209-2-6]
 gi|126721531|gb|EBA18234.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Roseobacter sp.
           SK209-2-6]
          Length = 440

 Score =  501 bits (1290), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 249/446 (55%), Positives = 322/446 (72%), Gaps = 9/446 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
            P++ F+K+YGCQMNVYDS RM +    +GY    S DDAD+I+LNTCHIREKAAEKVYS
Sbjct: 3   APKKLFIKTYGCQMNVYDSERMAEALGGEGYVETKSADDADMILLNTCHIREKAAEKVYS 62

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            LGR + LK     E  DL + VAGCVAQAEGEEI+RR P+V++VVGPQ+Y+RLPE+  +
Sbjct: 63  ELGRFKGLK----AEKPDLKIGVAGCVAQAEGEEIMRRQPLVDLVVGPQSYHRLPEMEAK 118

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           AR G++V+DTD+  EDKFE+L         KRG TAFLT+QEGCDKFC FCVVPYTRG E
Sbjct: 119 AREGEKVLDTDFPEEDKFEKLK---SRPKAKRGPTAFLTVQEGCDKFCAFCVVPYTRGAE 175

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR   +++ EA++L++ GV EITLLGQNVNA+ G G +G+  T + L++ L +I GL R
Sbjct: 176 VSRPADRILREAQELVERGVREITLLGQNVNAYHGAGANGD-LTLAQLIWELDKIDGLER 234

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP DM D LI+AHG    LMPYLHLPVQ+GSD+ILK MNR HTA  Y ++I+RI
Sbjct: 235 IRFTTSHPNDMQDDLIEAHGTCAKLMPYLHLPVQAGSDKILKRMNRSHTAESYIRLIERI 294

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+ RPDI IS DFIVGFP ET++DF+ATMDLV+++ Y  A+SFKYS R GTP +    QV
Sbjct: 295 RAARPDILISGDFIVGFPEETEEDFQATMDLVEEVKYGTAYSFKYSTRPGTPAAERA-QV 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
           D     +RL  LQ  L  QQ    ++ VG+ + VL EK G+  G++VG+S +L +V +  
Sbjct: 354 DPAAADDRLQRLQALLGRQQREVQESMVGREVSVLFEKTGRLPGQMVGKSDYLHAVHVAD 413

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
               IG++ KVRI     ++L GEL+
Sbjct: 414 CPREIGELAKVRIVSSGPNSLAGELL 439


>gi|159043568|ref|YP_001532362.1| (dimethylallyl)adenosine tRNA methylthiotransferase
           [Dinoroseobacter shibae DFL 12]
 gi|229890517|sp|A8LSE7|MIAB_DINSH RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|157911328|gb|ABV92761.1| RNA modification enzyme [Dinoroseobacter shibae DFL 12]
          Length = 437

 Score =  501 bits (1290), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 251/448 (56%), Positives = 316/448 (70%), Gaps = 17/448 (3%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P++ ++K+YGCQMNVYDS RM +    +GY + +  +DAD+I+LNTCHIREKAAEKVYS 
Sbjct: 4   PKKLYIKTYGCQMNVYDSERMAEAMGGEGYVQTDRAEDADMILLNTCHIREKAAEKVYSE 63

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK     E  DL + VAGCVAQAEG EI+RR P+V++VVGPQ Y+RLPEL  RA
Sbjct: 64  LGRFKPLK----AEKPDLKIGVAGCVAQAEGAEIMRRQPLVDLVVGPQAYHRLPELTARA 119

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             G + +DTD+  EDKF+ L+        KRG TAFLT+QEGCDKFC FCVVPYTRG E+
Sbjct: 120 ATGAKALDTDFPEEDKFDHLAARP---KAKRGPTAFLTVQEGCDKFCAFCVVPYTRGAEV 176

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG--KGLDGEKCTFSDLLYSLSEIKGLV 261
           SR  ++V+ EAR L++ GV EITLLGQNVNA+ G  +GL G       L++ L+EI GL 
Sbjct: 177 SRPAARVLTEARDLVERGVREITLLGQNVNAYHGHARGLAG-------LIWDLAEIDGLE 229

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHP DM D LI AHG  D LMPYLHLPVQSGSDRILK+MNR+HTA  Y ++I+R
Sbjct: 230 RIRFTTSHPNDMDDALIAAHGACDKLMPYLHLPVQSGSDRILKAMNRKHTAESYIRLIER 289

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           IR+ RPDI +S DFIVGFPGETD DF  TM LV+ +GY QA+SFKYS R GTP +   E 
Sbjct: 290 IRAARPDILLSGDFIVGFPGETDQDFADTMALVEAVGYGQAYSFKYSARPGTPAAEK-ED 348

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           V   V   RL  LQ  L  QQ +  DA VG    VL EK G+  G++VG+S  L +V + 
Sbjct: 349 VPGEVADARLQTLQALLTRQQRAIQDAKVGTTARVLFEKPGRLPGQMVGKSEHLHAVHVA 408

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELVV 469
           + +   GD+++VRI +   ++L G L+ 
Sbjct: 409 APDAARGDLVRVRIAESSANSLRGVLIA 436


>gi|167643994|ref|YP_001681657.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Caulobacter
           sp. K31]
 gi|229890472|sp|B0T155|MIAB_CAUSK RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|167346424|gb|ABZ69159.1| RNA modification enzyme, MiaB family [Caulobacter sp. K31]
          Length = 450

 Score =  501 bits (1289), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 255/447 (57%), Positives = 318/447 (71%), Gaps = 11/447 (2%)

Query: 23  VPQ-RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
            PQ R ++K+YGCQMNVYDS RM D+    GY  V+  + ADL+VLNTCHIREKA EKVY
Sbjct: 4   TPQKRLYIKTYGCQMNVYDSERMADVLRPLGYGIVDEPEGADLVVLNTCHIREKATEKVY 63

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S LG I+ +K  + + GG + V VAGCVAQAEG+EI+RR P V++VVGPQ Y++LPEL+ 
Sbjct: 64  SELGYIKQMKGRKAEAGGQMTVAVAGCVAQAEGQEIMRRQPAVDLVVGPQAYHQLPELIA 123

Query: 142 RA-RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           RA R     +  D++ ++KF+ L        +  GV+AFLT+QEGCDKFCTFCVVPYTRG
Sbjct: 124 RAHRATGERLSADFAADEKFDALP----AERQVSGVSAFLTVQEGCDKFCTFCVVPYTRG 179

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E SR   Q+ DEAR+L D GV E+TLLGQNVNA+ G G      T + L+  L++I GL
Sbjct: 180 GEWSRPPEQIEDEARRLADQGVREVTLLGQNVNAYDGGGY-----TLARLVRRLAKIPGL 234

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+RYTTSHPRDM D LI+AHG+L  LMPYLHLPVQ+GSD+ILK+MNR HTA  Y ++I+
Sbjct: 235 DRIRYTTSHPRDMGDDLIEAHGELPELMPYLHLPVQAGSDKILKAMNRDHTAESYIRLIE 294

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           +IR  RPDIA+S DFIVGFPGE D DF  T+DLV ++G+A AFSFKYS R GTP S M  
Sbjct: 295 KIRQARPDIAMSGDFIVGFPGERDGDFEKTLDLVREVGFASAFSFKYSRRPGTPASAMPG 354

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440
           QVDE VKAERL  L + L EQQ +FN   VG+ + VL EK G+  G++VGRSP+LQ+V  
Sbjct: 355 QVDEAVKAERLERLNQLLDEQQKAFNILQVGKTMPVLFEKKGRNPGQIVGRSPYLQAVHA 414

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGEL 467
                 +G I+ VRI      +L G L
Sbjct: 415 VGSEDLLGQIVPVRIESSAKMSLGGVL 441


>gi|288959688|ref|YP_003450029.1| bifunctional enzyme involved in thiolation and methylation of tRNA
           [Azospirillum sp. B510]
 gi|288911996|dbj|BAI73485.1| bifunctional enzyme involved in thiolation and methylation of tRNA
           [Azospirillum sp. B510]
          Length = 456

 Score =  500 bits (1288), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 239/432 (55%), Positives = 313/432 (72%), Gaps = 6/432 (1%)

Query: 36  MNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRI 95
           MNVYDS RM D+    GY+ V+  D AD+++LNTCHIREKAAEKV+S LGR+R +K+ + 
Sbjct: 1   MNVYDSARMADVLAPLGYQPVDEPDGADMVILNTCHIREKAAEKVFSELGRLRQMKDRKA 60

Query: 96  K-EGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA-RFGKRVVDTD 153
           + E G +++ VAGCVAQAEGEEI+ R+P V++V GPQTY+ LPE++ +A R    V++TD
Sbjct: 61  EAEDGRMILAVAGCVAQAEGEEIVARAPFVDMVFGPQTYHTLPEMVAKASRAAGSVLNTD 120

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           +  E KF+ L    G     +GV+AFL +QEGCDKFCTFCVVPYTRG E SR   Q++ E
Sbjct: 121 FPAESKFDLLPEEAG----SQGVSAFLAVQEGCDKFCTFCVVPYTRGAEFSRPAGQILAE 176

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
           A++L+  G  EITLLGQNVNAW G G DG       L+  L+EI GL R+RYTTSHPRDM
Sbjct: 177 AKRLVAGGTREITLLGQNVNAWHGDGPDGATWGLGRLIRQLAEIDGLERIRYTTSHPRDM 236

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
           +D LI+AH ++  LMPYLHLPVQ+GSDRIL +MNR+H+A +YR+++DR+R  +PD+A+S 
Sbjct: 237 ADDLIRAHAEVPQLMPYLHLPVQAGSDRILAAMNRKHSADDYRRLVDRLRDAKPDLAMSG 296

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLC 393
           DFIVGFPGE+D DF AT+ LV  IGYAQA+SFKYSPR GTP S    QV + VK  RL  
Sbjct: 297 DFIVGFPGESDADFAATLKLVTDIGYAQAYSFKYSPRPGTPASVEGSQVPDEVKESRLAA 356

Query: 394 LQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKV 453
           L + L  QQV+FN   VG+ + VL ++ G+  G+L+GRSPW+QSV   +    +G I++V
Sbjct: 357 LHQLLNAQQVAFNHGFVGRSVPVLFDRVGRRGGQLLGRSPWMQSVHAEANERLLGRIVEV 416

Query: 454 RITDVKISTLYG 465
           RI     ++L G
Sbjct: 417 RIGAALPNSLAG 428


>gi|50593428|gb|AAT79459.1| putative miaB protein [Agrobacterium luteum]
          Length = 445

 Score =  499 bits (1286), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 237/443 (53%), Positives = 316/443 (71%), Gaps = 10/443 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++F +KS+GCQMNVYD  RM ++   QG     + ++ADL+VLNTCHIREKA +KVYS +
Sbjct: 7   KKFHIKSFGCQMNVYDGERMSELLVDQGMSAAENDEEADLVVLNTCHIREKAVDKVYSDI 66

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR+R       K+G   ++ VAGCVAQAEG+EI RR+P V++VVGPQ Y+RLPEL+E A+
Sbjct: 67  GRLRR------KDGTSPMIAVAGCVAQAEGKEISRRAPSVDIVVGPQAYHRLPELMETAK 120

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            GK+ +DTD     KF+ L        ++   TAFLT+QEGCDKFCT+CVVPYTRG EIS
Sbjct: 121 SGKKALDTDMPAISKFDILP----SRGKQARPTAFLTVQEGCDKFCTYCVVPYTRGAEIS 176

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R  + +VDEA+ L+D G  EITLLGQNVNAW G+   G       L+ +L +I GL R+R
Sbjct: 177 RPWADLVDEAKALVDGGAREITLLGQNVNAWTGEDEKGNHQGLDGLIRALDKISGLKRIR 236

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           Y TSHP DM++ LI AHGD+  LMP+LHLPVQSGSDRILK+MNR H+   Y  I++++R 
Sbjct: 237 YMTSHPNDMTEGLIAAHGDVGKLMPFLHLPVQSGSDRILKAMNRSHSVQSYLAILEKMRE 296

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           +RPDIA+S DFIVGFPGETD DF  T+ +V    Y+QAFSFKYSPR GTP + M +Q+  
Sbjct: 297 LRPDIALSGDFIVGFPGETDQDFEETLQIVRDANYSQAFSFKYSPRPGTPAAGMDDQIAP 356

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
            V  ERL  LQ  L EQQ +FN   VG+  ++L+E+ GK  G+L+G++PWLQS+ + S +
Sbjct: 357 EVMDERLQRLQALLNEQQYAFNQETVGRTTDILLERRGKLDGQLIGKTPWLQSLHIISPD 416

Query: 445 HNIGDIIKVRITDVKISTLYGEL 467
            +IGD+++V +T    ++L G++
Sbjct: 417 LSIGDLVEVEVTRAGPNSLTGQI 439


>gi|114766591|ref|ZP_01445547.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Pelagibaca bermudensis
           HTCC2601]
 gi|114541207|gb|EAU44259.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Roseovarius sp. HTCC2601]
          Length = 435

 Score =  499 bits (1285), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 253/447 (56%), Positives = 323/447 (72%), Gaps = 17/447 (3%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P++ F+K+YGCQMNVYDS RM +    QGY + +S DDAD+I+LNTCHIREKAAEKVYS 
Sbjct: 4   PKKLFIKTYGCQMNVYDSERMAEAMGGQGYVQTDSPDDADMILLNTCHIREKAAEKVYSE 63

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK+ R     DL + VAGCVAQAEGEEI+RR P+V++VVGPQ+Y+RLPEL  +A
Sbjct: 64  LGRYKGLKSERP----DLKIGVAGCVAQAEGEEIMRRQPMVDLVVGPQSYHRLPELEAKA 119

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           R G++ +DTD+  EDKFERL         KRG TAFLT+QEGCDKFC FCVVPYTRG E+
Sbjct: 120 RGGEKALDTDFPEEDKFERLK---SRPKAKRGPTAFLTVQEGCDKFCAFCVVPYTRGAEV 176

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG--KGLDGEKCTFSDLLYSLSEIKGLV 261
           SR   +V+ EAR L++ GV E+TLLGQNVNA+ G  +GL G       L+  L++I GL 
Sbjct: 177 SRPADRVLTEARDLVERGVRELTLLGQNVNAYHGHDRGLAG-------LIRELAKIDGLE 229

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHP DM D LI AHGD D LMPYLHLPVQ+GSDRILK MNR+HTA +Y ++I+R
Sbjct: 230 RIRFTTSHPNDMDDDLIAAHGDCDKLMPYLHLPVQAGSDRILKRMNRQHTAEQYLRLIER 289

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R+ RPD+ +S DFIVGFP ET++DFR TM L++ + Y  AFSFKYS R GTP +    Q
Sbjct: 290 LRAARPDLHLSGDFIVGFPEETEEDFRDTMALIEAVQYGSAFSFKYSERPGTPAAER-PQ 348

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           V E  K +RL  LQ  L  QQ +  DA VG+ + VL EK G+  G++VG+S +L +V + 
Sbjct: 349 VSEAEKDDRLQRLQALLTRQQRALQDAMVGRDVGVLFEKAGRLPGQMVGKSDYLHAVHVA 408

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
           ++    GD+  VRI +   ++L G LV
Sbjct: 409 AEGLQPGDLRPVRIVESGPNSLKGVLV 435


>gi|302381348|ref|YP_003817171.1| RNA modification enzyme, MiaB family [Brevundimonas subvibrioides
           ATCC 15264]
 gi|302191976|gb|ADK99547.1| RNA modification enzyme, MiaB family [Brevundimonas subvibrioides
           ATCC 15264]
          Length = 466

 Score =  499 bits (1284), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 251/461 (54%), Positives = 320/461 (69%), Gaps = 4/461 (0%)

Query: 10  VAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNT 69
           V  MV   V     P+R F+K+YGCQMNVYDS RM D+    GY   ++ + AD ++LNT
Sbjct: 6   VPPMVETAVPPA-APKRLFIKTYGCQMNVYDSERMADVLRPLGYAPTDTPEGADFVILNT 64

Query: 70  CHIREKAAEKVYSFLGRIRNLKNSRIKEGGD-LLVVVAGCVAQAEGEEILRRSPIVNVVV 128
           CHIREKAAEKVYS LG++R +K  +   GG  + + VAGCVAQAEGEEI+RR P V++VV
Sbjct: 65  CHIREKAAEKVYSELGKLRLMKLDKAASGGGAMTIAVAGCVAQAEGEEIMRRQPAVDIVV 124

Query: 129 GPQTYYRLPELLER-ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCD 187
           GPQ Y++LPELL R AR     +  D++  +KF+ ++    G     G TAFLT+QEGCD
Sbjct: 125 GPQAYHQLPELLTRTARARGERIGADFAPNEKFDAMAPELLGVRGVDGPTAFLTVQEGCD 184

Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTF 247
           KFC+FCVVPYTRG E SR ++ V+DEAR L   GV E+TLLGQNVNA+ G G DG   T 
Sbjct: 185 KFCSFCVVPYTRGAEWSRPVADVLDEARGLAAQGVREVTLLGQNVNAYDGAGPDG-VWTL 243

Query: 248 SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307
           + L  +L+E+ GL R+RYTTSHP DMS+ LI+AH +LD LMPYLHLPVQSGSDRIL++MN
Sbjct: 244 AKLARALAEVPGLDRIRYTTSHPNDMSEDLIEAHRELDALMPYLHLPVQSGSDRILRAMN 303

Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           R+H   +Y  +I RIR  RPDIAIS DFIVGFPGETD DF  T+ LV ++GYA AF+F Y
Sbjct: 304 RKHGRAKYIDLIGRIREARPDIAISGDFIVGFPGETDRDFEETLGLVREVGYASAFTFMY 363

Query: 368 SPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK 427
           SPR GTP + M  QV   V   RL  LQ  + EQQ++FN A  G+ + VL EK G+   +
Sbjct: 364 SPRPGTPAATMGTQVPPEVALARLHALQALIVEQQMAFNVAQAGKTLNVLFEKKGRNGRQ 423

Query: 428 LVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            +GRSP+LQSV +   +H +G I+ V I   + ++L G L+
Sbjct: 424 AIGRSPYLQSVHVEDADHLMGRIVPVLIEHGQQNSLKGRLI 464


>gi|83941259|ref|ZP_00953721.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Sulfitobacter sp. EE-36]
 gi|83847079|gb|EAP84954.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Sulfitobacter sp. EE-36]
          Length = 439

 Score =  499 bits (1284), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 245/441 (55%), Positives = 314/441 (71%), Gaps = 9/441 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
            P++ F+K+YGCQMNVYDS RM +      Y    +  DAD+I+LNTCHIREKAAEKVYS
Sbjct: 3   APKKLFIKTYGCQMNVYDSERMAESL-GDNYVETKTAADADMILLNTCHIREKAAEKVYS 61

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            LGR++ LK        DL + VAGCVAQAEG EI+RR P V++VVGPQ+Y+RLP +  R
Sbjct: 62  ELGRLKPLKEL----NPDLKIGVAGCVAQAEGAEIMRRQPAVDLVVGPQSYHRLPAMEAR 117

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            R GK  +DTD+  EDKFE+L    G     R  +AFLT+QEGCDKFC FCVVPYTRG E
Sbjct: 118 VRSGKTALDTDFPEEDKFEKLK---GRGKATRAPSAFLTVQEGCDKFCAFCVVPYTRGAE 174

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR  ++V+ EAR+L++ GV E+TLLGQNVNA+ G G +G   T + L+  L++I GL R
Sbjct: 175 VSRPATRVLTEARELVERGVREVTLLGQNVNAYHGVGEEGADYTLARLIKELAKIDGLER 234

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +RYTTSHP DM D LI AHG++D LMPYLHLPVQSGSDRILK MNR HTA  Y ++I+RI
Sbjct: 235 IRYTTSHPNDMDDALIAAHGEIDKLMPYLHLPVQSGSDRILKRMNRSHTAESYLRLIERI 294

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+ RPDI +S DFIVGFP ETD DF ATM+LV ++ Y  A+SFKYS R GTP +    QV
Sbjct: 295 RAARPDIVMSGDFIVGFPEETDADFEATMELVREVKYGYAYSFKYSTRPGTPAAER-PQV 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
           +  +  ERL  LQ  +  QQ    ++ VG+ + VL+EK G+E G++VG+S +L SV ++ 
Sbjct: 354 EPAIADERLQRLQGLITGQQREIQNSMVGRDVSVLVEKAGREAGQMVGKSEYLHSVHIDE 413

Query: 443 KNHNIGDIIKVRITDVKISTL 463
               IGD+++VRI D K ++L
Sbjct: 414 AQAEIGDVVRVRIVDAKTNSL 434


>gi|329113346|ref|ZP_08242127.1| (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
           [Acetobacter pomorum DM001]
 gi|326697171|gb|EGE48831.1| (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
           [Acetobacter pomorum DM001]
          Length = 472

 Score =  498 bits (1283), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 244/442 (55%), Positives = 313/442 (70%), Gaps = 2/442 (0%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
             V ++GCQMNVYDS RM D+    GY+ V + D AD+I+LNTCHIR++AAEKV+S LGR
Sbjct: 25  LHVITWGCQMNVYDSARMGDVLRPLGYQPVATPDAADMIILNTCHIRDRAAEKVFSELGR 84

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           +R +K +R   G   ++ VAGCVAQAEG+EIL R+P V++V+GPQTY+RLPE++ RA   
Sbjct: 85  LRKIKEARETAGQQTIIAVAGCVAQAEGQEILARAPYVDIVLGPQTYHRLPEMVARAARA 144

Query: 147 KRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
               ++TD+  E KF+ L   +         TAFLTIQEGCDKFC+FCVVPYTRG E SR
Sbjct: 145 GGAVIETDFPAEQKFDFLPESEAPQTAGN-YTAFLTIQEGCDKFCSFCVVPYTRGAESSR 203

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            +  V+ EAR+++++GV +I LLGQNVNA+ G+G DG       L Y L+++ GL R+RY
Sbjct: 204 PVLSVLAEARRMVESGVKDICLLGQNVNAYHGEGPDGSTWGLPQLAYELAKLPGLSRIRY 263

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
            TSHPRDM D LI AH DL  LMP+LHLPVQ+GSDRIL++MNR HTA EYR I+ R+R  
Sbjct: 264 MTSHPRDMDDALIAAHRDLPELMPFLHLPVQAGSDRILRAMNRGHTADEYRDIVRRLREA 323

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
           RPD+A+SSDFIVG PGETD+DF ATM LV  +G+A A+SFKYSPR GTP +    QV E+
Sbjct: 324 RPDLALSSDFIVGHPGETDEDFEATMQLVRDVGFALAYSFKYSPRPGTPAAGAGMQVPED 383

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445
           VK  RL  LQ  LREQQ +FN   VG+ I VL    G++ G++ GRSPWLQ V ++   H
Sbjct: 384 VKDARLQALQALLREQQDAFNATLVGKTIPVLFTSEGRKPGQIAGRSPWLQPVHVSGPKH 443

Query: 446 NIGDIIKVRITDVKISTLYGEL 467
            IG  + VRI +   ++L G L
Sbjct: 444 LIGKELPVRIVERLTNSLSGVL 465


>gi|260427313|ref|ZP_05781292.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Citreicella sp. SE45]
 gi|260421805|gb|EEX15056.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Citreicella sp. SE45]
          Length = 435

 Score =  498 bits (1283), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 251/447 (56%), Positives = 320/447 (71%), Gaps = 17/447 (3%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P++ F+K+YGCQMNVYDS RM +    QGY + +S DDAD+I+LNTCHIREKAAEKVYS 
Sbjct: 4   PKKLFIKTYGCQMNVYDSERMAEAMGGQGYVQTDSPDDADMILLNTCHIREKAAEKVYSE 63

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK  R     DL + VAGCVAQAEGEEI+RR P+V++VVGPQ+Y+RLPEL  +A
Sbjct: 64  LGRYKVLKAERP----DLKIGVAGCVAQAEGEEIMRRQPMVDLVVGPQSYHRLPELEAKA 119

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           R G++ +DTD+  EDKFERL         KRG TAFLT+QEGCDKFC FCVVPYTRG E+
Sbjct: 120 RSGEKALDTDFPEEDKFERLQARPKA---KRGPTAFLTVQEGCDKFCAFCVVPYTRGAEV 176

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG--KGLDGEKCTFSDLLYSLSEIKGLV 261
           SR   +V+ EAR L++ GV EITLLGQNVNA+ G  +GL G       L+  L+ I GL 
Sbjct: 177 SRPADRVLTEARDLVERGVREITLLGQNVNAYHGHDRGLAG-------LIRELAAIDGLE 229

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHP DM D LI AHGD + LMPYLHLPVQ+GSDRILK MNR HTA  Y ++++R
Sbjct: 230 RIRFTTSHPNDMDDALIAAHGDCEKLMPYLHLPVQAGSDRILKRMNRHHTAEAYLKLVER 289

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R+ RPD+ +S DFIVGFP ET++DF+AT+DLV+ + Y  AFSFKYS R GTP +    Q
Sbjct: 290 LRAARPDLHLSGDFIVGFPEETEEDFQATLDLVEAVQYGSAFSFKYSERPGTPAAER-PQ 348

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           V E  K +RL  LQ  L  QQ +  DA +G+ + VL EK G+  G++VG+S +L +V + 
Sbjct: 349 VPEAEKDDRLQRLQALLVRQQRALQDAMIGREVGVLFEKAGRRPGQMVGKSDYLHAVYVE 408

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
           +     GD+ +VRI +   ++L G L 
Sbjct: 409 ADGLARGDLRRVRIVESSPNSLRGVLA 435


>gi|209883674|ref|YP_002287531.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Oligotropha
           carboxidovorans OM5]
 gi|229890581|sp|B6JCT6|MIAB_OLICO RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|209871870|gb|ACI91666.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Oligotropha
           carboxidovorans OM5]
          Length = 475

 Score =  498 bits (1283), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 233/450 (51%), Positives = 319/450 (70%), Gaps = 5/450 (1%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P++  +KSYGCQMNVYD+ RM D    +G+       +ADL++LNTCHIREKA+EKV+S 
Sbjct: 6   PRKLHIKSYGCQMNVYDAQRMVDTLAPEGFVETADPAEADLVILNTCHIREKASEKVFSE 65

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR+R +K    + G ++ + VAGCVAQAEG EI RR+  V+VVVGPQ+Y+ LP+LL +A
Sbjct: 66  LGRLRVIKEEAARTGREMKIAVAGCVAQAEGAEITRRASTVDVVVGPQSYHNLPKLLAKA 125

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           R G   ++T++ +EDKF  L        R RGV+AF+T+QEGCDKFCTFCVVPYTRG+E+
Sbjct: 126 RDGAPAIETEFPIEDKFSALPAPKPAAIRARGVSAFVTVQEGCDKFCTFCVVPYTRGMEV 185

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR ++ +V +A++L +NGV E+TL+GQNVNA+ G   +G   +   LL+ L+ + G+ RL
Sbjct: 186 SRPVADIVADAKRLAENGVRELTLIGQNVNAYHGDDENGRTSSLGRLLHRLAMLPGIARL 245

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           RY+TSHPRD+ D LI+AH D+  +MP++HLPVQSGSDRIL +MNR+HTA +Y + I+R R
Sbjct: 246 RYSTSHPRDVDDSLIEAHRDIPAVMPFVHLPVQSGSDRILAAMNRKHTAADYIRTIERFR 305

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE--- 380
            VRP+IA SSDFIVGFPGE++ DF  T+ LV +IGYA A+SFKYSPR GTP ++M E   
Sbjct: 306 KVRPEIAFSSDFIVGFPGESEQDFADTLALVTQIGYAGAYSFKYSPRPGTPAADMQETDT 365

Query: 381 --QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSV 438
              V   V  ERL  LQ  +  QQ SFN A +G+ +EVL E+  +E G++VGR+ +LQ  
Sbjct: 366 ALAVPAAVMDERLAQLQALIDAQQASFNRAAIGRTVEVLFERAAREPGQIVGRTAYLQPA 425

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            + +    IG ++ V I  ++  +L G L 
Sbjct: 426 HVMASPDIIGKVLPVTIDSLERYSLKGRLA 455


>gi|162147627|ref|YP_001602088.1| (dimethylallyl)adenosine tRNA methylthiotransferase
           [Gluconacetobacter diazotrophicus PAl 5]
 gi|229890548|sp|A9HIM2|MIAB_GLUDA RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|161786204|emb|CAP55786.1| conserved hypothetical protein [Gluconacetobacter diazotrophicus
           PAl 5]
          Length = 480

 Score =  498 bits (1283), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 253/470 (53%), Positives = 323/470 (68%), Gaps = 13/470 (2%)

Query: 11  AHMVSQIVDQCIVPQR-----------FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSM 59
           A  VS + DQ   P               V ++GCQMNVYDS RM D+    GY  V++ 
Sbjct: 6   AQEVSAVTDQPACPPAMDLAPASGSRGLHVITWGCQMNVYDSARMTDVLRPLGYHPVDTP 65

Query: 60  DDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILR 119
           D AD+++LNTCHIR++AAEKV+S LGR+R +K +R  EG   ++ VAGCVAQAEG+EIL 
Sbjct: 66  DTADMVILNTCHIRDRAAEKVFSELGRLRLVKEARATEGQQTVLAVAGCVAQAEGKEILA 125

Query: 120 RSPIVNVVVGPQTYYRLPELLERARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTA 178
           R+P V++V+GPQTY+RLPE++ RA      V+DTD+  E KF+ L       +   G+T+
Sbjct: 126 RAPFVDIVLGPQTYHRLPEMVARAARAAGAVIDTDFPAEQKFDFLPDAQAPQS-PGGITS 184

Query: 179 FLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK 238
           FLTIQEGCDKFC+FCVVPYTRG E SR ++ V+ EAR++++ G  EITLLGQNVNA+ G+
Sbjct: 185 FLTIQEGCDKFCSFCVVPYTRGAEASRPVASVLREARRMVECGAREITLLGQNVNAYHGE 244

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
           G DG     + L  +L+ I GL R+RYTTSHPRDM   LI AH DL  LMP+LHLPVQSG
Sbjct: 245 GPDGRVWGLARLAEALAAIPGLARIRYTTSHPRDMDADLIAAHRDLPALMPFLHLPVQSG 304

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           SDRIL +MNR HTA +YR ++ R+R  RPDIA+SSDFIVG PGETD DF AT+ L+  +G
Sbjct: 305 SDRILDAMNRGHTAADYRDLVLRLRDARPDIALSSDFIVGHPGETDADFEATLQLIRDVG 364

Query: 359 YAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI 418
           +AQAFSFKYSPR GTP +    QV E+VK  RL  LQ  LR QQ +FND  VG ++ VL 
Sbjct: 365 FAQAFSFKYSPRPGTPAAGAPLQVAEDVKDARLQALQALLRTQQDAFNDGTVGHVVPVLF 424

Query: 419 EKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
             HG++ G+L GRSP+LQ V +   +  IG I  V I +   ++L G LV
Sbjct: 425 TGHGRKAGQLSGRSPYLQPVHVEGPDSLIGQIANVEIRERYTNSLSGTLV 474


>gi|110681057|ref|YP_684064.1| tRNA-i(6)A37 thiotransferase enzyme MiaB, putative [Roseobacter
           denitrificans OCh 114]
 gi|123361551|sp|Q161G5|MIAB_ROSDO RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|109457173|gb|ABG33378.1| tRNA-i(6)A37 thiotransferase enzyme MiaB, putative [Roseobacter
           denitrificans OCh 114]
          Length = 441

 Score =  498 bits (1283), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 243/441 (55%), Positives = 322/441 (73%), Gaps = 8/441 (1%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
            P++ F+K+YGCQMNVYDS RM +   ++GY    + +DAD+I+LNTCHIREKAAEKVYS
Sbjct: 3   APKKLFIKTYGCQMNVYDSERMSEALVAEGYVETKTAEDADMILLNTCHIREKAAEKVYS 62

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            LGR+++LK     +  DL + VAGCVAQAEGEEI+RR P V++VVGPQ+Y+RLP++  R
Sbjct: 63  ELGRLKSLK----ADNPDLKLGVAGCVAQAEGEEIMRRQPAVDLVVGPQSYHRLPQMEAR 118

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            R G + +DTD+  EDKFE L         +R  +AFLT+QEGCDKFC FCVVPYTRG E
Sbjct: 119 LREGHKALDTDFPPEDKFEELKARPKA---RRAPSAFLTVQEGCDKFCAFCVVPYTRGAE 175

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR +++V+DEAR L++ GV EITLLGQNVNA+ G G DG + T + L+++L++I GL R
Sbjct: 176 VSRPVTRVLDEARDLVERGVREITLLGQNVNAYHGAGADGNEKTLAQLIWALNDIDGLER 235

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP DM D LI+AH D   LMPYLHLPVQSGSDRILK MNR+HTA  Y ++I+RI
Sbjct: 236 IRFTTSHPNDMQDDLIEAHRDCPKLMPYLHLPVQSGSDRILKRMNRKHTADSYLRLIERI 295

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R  RPDI +S DFIVGFP ET+ DF+AT+DL++ + Y  A+SFKYS R GTP +    QV
Sbjct: 296 RVGRPDILLSGDFIVGFPEETEADFQATLDLIEAVNYGYAYSFKYSTRPGTPAAERA-QV 354

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
           D     ERL  +Q  +  QQ     + VG+ + VLIEK G+ +G++VG+S +L +V ++ 
Sbjct: 355 DPVEADERLQRIQALITRQQQDIQQSMVGRDVSVLIEKPGRFEGQMVGKSEYLHAVHVDQ 414

Query: 443 KNHNIGDIIKVRITDVKISTL 463
            +  IGDI+ VRI + K ++L
Sbjct: 415 CSAQIGDILPVRIVEAKRNSL 435


>gi|255263805|ref|ZP_05343147.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Thalassiobium sp. R2A62]
 gi|255106140|gb|EET48814.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Thalassiobium sp. R2A62]
          Length = 436

 Score =  498 bits (1281), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 243/447 (54%), Positives = 319/447 (71%), Gaps = 17/447 (3%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P++ F+K+YGCQMNVYDS RM +    QGY    + DDAD+I+LNTCHIREKAAEK+YS 
Sbjct: 4   PKKLFIKTYGCQMNVYDSERMAEALGGQGYVETKTPDDADMILLNTCHIREKAAEKIYSE 63

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR R  K+++     DL + VAGCVAQAEGEEI+RR P+V++VVGPQ+Y+RLPE+ +  
Sbjct: 64  LGRYRGFKDAKP----DLKIGVAGCVAQAEGEEIMRRQPMVDLVVGPQSYHRLPEMEDAV 119

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             G++ +DTD+  EDKFE L          RG TAFLT+QEGCDKFC FCVVPYTRG E+
Sbjct: 120 SRGEKALDTDFPEEDKFEHLK---SRPKAARGATAFLTVQEGCDKFCAFCVVPYTRGAEL 176

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK--GLDGEKCTFSDLLYSLSEIKGLV 261
           SR   +++ EA+ L++ GV EITLLGQNVNA+ G   GL G       L++ L ++ GL 
Sbjct: 177 SRPADRIIREAQDLVERGVREITLLGQNVNAYHGHEGGLAG-------LIWDLDKVDGLK 229

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHP DM   LI AHG  D LMPYLHLPVQSGSDRILK+MNR+HT  EY  +I+R
Sbjct: 230 RIRFTTSHPNDMDQALIDAHGTCDKLMPYLHLPVQSGSDRILKAMNRKHTREEYFALIER 289

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           IR+ RPD+ +S DFIVGFPGETD DF  TMDLV ++ + QA+SFKYS R GTP +    Q
Sbjct: 290 IRAARPDLLLSGDFIVGFPGETDQDFEDTMDLVRRVNFGQAYSFKYSTRPGTPAAEK-PQ 348

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           +D+ +  ERL  LQ+ L+EQQV+  +  VG+ + VL EK G+E G+L+G+S +L +V   
Sbjct: 349 MDDGLATERLHRLQELLKEQQVAAQEGMVGRDVRVLFEKKGREAGQLIGKSEYLHAVHAE 408

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
           + +  IG + KV + + + ++L+  LV
Sbjct: 409 ADDAMIGTVQKVHVIEARTNSLHARLV 435


>gi|163741718|ref|ZP_02149108.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Phaeobacter gallaeciensis
           2.10]
 gi|161384891|gb|EDQ09270.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Phaeobacter gallaeciensis
           2.10]
          Length = 440

 Score =  498 bits (1281), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 249/449 (55%), Positives = 324/449 (72%), Gaps = 15/449 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
            P++ F+K+YGCQMNVYDS RM +    +GY    S DDAD+I+LNTCHIREKAAEKVYS
Sbjct: 3   APKKLFIKTYGCQMNVYDSERMAEALGGEGYVETKSPDDADMILLNTCHIREKAAEKVYS 62

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            LGR + LK     E  DL + VAGCVAQAEG+EI+RR P+V++VVGPQ+Y+RLPE+  +
Sbjct: 63  ELGRFKGLK----AEKPDLKIGVAGCVAQAEGQEIMRRQPLVDLVVGPQSYHRLPEMEAK 118

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNR---KRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           AR G++V+DTD+  EDKFE+L       NR   KRG TAFLT+QEGCDKFC FCVVPYTR
Sbjct: 119 AREGEKVLDTDFPEEDKFEKLK------NRPKAKRGPTAFLTVQEGCDKFCAFCVVPYTR 172

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G E+SR   +++ EA+ L++ GV EITLLGQNVNA+ G G +G+K T + L++ L ++ G
Sbjct: 173 GAEVSRPADRILREAQDLVERGVREITLLGQNVNAYHGAGPNGDK-TLAQLIWELDKVDG 231

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           L R+R+TTSHP DM D LI+AHG    LMPYLHLPVQ+GSD+ILK MNR HTA  Y ++I
Sbjct: 232 LERIRFTTSHPNDMQDDLIEAHGTCAKLMPYLHLPVQAGSDKILKRMNRAHTAESYLRLI 291

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
           +RIR+ RPDI IS DFIVGFP ET+ DF+AT+DLV+++ Y  A+SFKYS R GTP +   
Sbjct: 292 ERIRAARPDILISGDFIVGFPEETEADFQATLDLVEEVKYGTAYSFKYSTRPGTPAAER- 350

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV 439
            QVD     +RL  LQ  L +QQ    D+ VG+ + VL EK G+  G++VG+S +L +V 
Sbjct: 351 PQVDPAEADDRLQRLQALLTKQQREVQDSMVGRDVTVLFEKAGRFPGQMVGKSDYLHAVH 410

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
           +   +  IGD+ +VRI     ++L G L+
Sbjct: 411 VADCDRAIGDLARVRILSSGANSLAGALI 439


>gi|148555302|ref|YP_001262884.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Sphingomonas
           wittichii RW1]
 gi|229891001|sp|A5V8Y0|MIAB_SPHWW RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|148500492|gb|ABQ68746.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Sphingomonas wittichii
           RW1]
          Length = 453

 Score =  498 bits (1281), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 252/447 (56%), Positives = 315/447 (70%), Gaps = 8/447 (1%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
            P+ F VKS+GCQMNVYD  RM ++  +QG    +S D ADL+VLNTCHIREKAAEKVYS
Sbjct: 9   APKSFHVKSFGCQMNVYDGARMAELLEAQGMHAADSADAADLVVLNTCHIREKAAEKVYS 68

Query: 83  FLGRIRNLKNSRIKEG-GDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
            +GRI   K +  +EG    ++ VAGCVAQAEG EI RR+P V++VVGPQ Y+ LP+L+ 
Sbjct: 69  DIGRIVK-KAADAEEGRARPMIAVAGCVAQAEGPEIPRRAPAVDIVVGPQAYHNLPQLVA 127

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
            A  G+R +DTD     KF+ L        R++G TAFLT+QEGCDKFCT+CVVPYTRG 
Sbjct: 128 DAAEGRRALDTDMPAASKFDTLP-----KRRRQGPTAFLTVQEGCDKFCTYCVVPYTRGA 182

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           EISR    +VDEA+ L+D G  EITLLGQNVNAW G+   G       L+ +L  + GL 
Sbjct: 183 EISRPWGAIVDEAKALVDAGAREITLLGQNVNAWTGEDDRGRTQGLDGLIRALDALPGLA 242

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+RYTTSHP DMSD LI AHG++  LMP+LHLPVQ+GSDRILK+MNR H A  Y ++I+R
Sbjct: 243 RIRYTTSHPNDMSDGLIAAHGEVAKLMPFLHLPVQAGSDRILKAMNRSHDAAGYLRLIER 302

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R+ RPDIA+S DFIVGFPGETD+DF AT+ +V  + +AQAFSFKYSPR GTP ++M  Q
Sbjct: 303 VRAARPDIAVSGDFIVGFPGETDEDFEATLAIVRAVDHAQAFSFKYSPRPGTPAASMDGQ 362

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           V   V  ERL  LQ  L EQQ  FN A VG+  EVLIE+ GK+ G+ +G+SPWLQSV++ 
Sbjct: 363 VAPAVMDERLQRLQALLNEQQHRFNLATVGKRCEVLIERDGKKPGQRIGKSPWLQSVIVE 422

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                IG ++ V I     ++L G LV
Sbjct: 423 D-GPAIGTLVTVDIVSAGPNSLSGALV 448


>gi|83313562|ref|YP_423826.1| (dimethylallyl)adenosine tRNA methylthiotransferase
           [Magnetospirillum magneticum AMB-1]
 gi|123726842|sp|Q2VYQ8|MIAB_MAGMM RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|82948403|dbj|BAE53267.1| 2-methylthioadenine synthetase [Magnetospirillum magneticum AMB-1]
          Length = 438

 Score =  498 bits (1281), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 239/440 (54%), Positives = 322/440 (73%), Gaps = 10/440 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +R FVK+YGCQMNVYDS RM D+    GY   +  ++AD+++LNTCHIREKAAEKV+S L
Sbjct: 3   KRLFVKTYGCQMNVYDSARMADVLAPLGYGPADHAEEADMVILNTCHIREKAAEKVFSEL 62

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-ERA 143
           GR+R L+ ++ + GG +++ VAGCVAQAEGEEILRR+P V++V+GPQTY+RLPE++ + A
Sbjct: 63  GRLRKLQAAKAEAGGRMILAVAGCVAQAEGEEILRRAPFVDIVLGPQTYHRLPEMVAQAA 122

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           R G  V+DT++  E KF+ L           G +AFL++QEGCDKFCTFCVVPYTRG E 
Sbjct: 123 RAGGAVLDTEFPAEPKFDFLP-----EPHAEGTSAFLSVQEGCDKFCTFCVVPYTRGAEY 177

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR  + V+ EA  L   GV EITLLGQNVN W G    GE      L+ +L+E++G+ R+
Sbjct: 178 SRPAAAVLAEAATLAAGGVREITLLGQNVNGWHG----GEGWGLGRLIRALAEVEGVERI 233

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           RYTTSHPRDM D LI+AH +L  LMP+LHLPVQSGSDRIL +MNR H    Y +++D+++
Sbjct: 234 RYTTSHPRDMDDELIRAHAELPQLMPFLHLPVQSGSDRILAAMNRGHDRDTYLRLVDKLK 293

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           S  PD+A+SSDFIVGFPGE+D DF A+MDL+ ++G+ Q +SFKYSPR GTP + M  QV 
Sbjct: 294 SACPDLALSSDFIVGFPGESDADFEASMDLIRRVGFVQTYSFKYSPRPGTPAAAMETQVP 353

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
           E VK ERL  +Q  L +Q + FN ACVG+ + +L+++ G+  G+L+GRSP++Q V + + 
Sbjct: 354 EAVKDERLAQVQALLLDQTMRFNHACVGREMRILLDRPGRHAGQLLGRSPYMQPVHVKAA 413

Query: 444 NHNIGDIIKVRITDVKISTL 463
            H IG ++ +RIT V  ++L
Sbjct: 414 AHLIGTVVPLRITKVHPNSL 433


>gi|87199004|ref|YP_496261.1| tRNA-i(6)A37 modification enzyme MiaB [Novosphingobium
           aromaticivorans DSM 12444]
 gi|123736257|sp|Q2G9P6|MIAB_NOVAD RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|87134685|gb|ABD25427.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 443

 Score =  498 bits (1281), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 245/442 (55%), Positives = 303/442 (68%), Gaps = 12/442 (2%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           F VKS+GCQMNVYD  RM ++  +QG       DDADL+VLNTCHIREKA EKVYS +GR
Sbjct: 14  FRVKSFGCQMNVYDGERMAELLAAQGMSAAGDGDDADLVVLNTCHIREKATEKVYSDIGR 73

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           +R        +G   L+ VAGCVAQAEGEEI+ R+P V VVVGPQ+Y+RLPE++  A  G
Sbjct: 74  LRR------ADGSAPLIAVAGCVAQAEGEEIMARAPSVKVVVGPQSYHRLPEMVADAAAG 127

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           KR  +TD   E KF  L        RK   TAFLT+QEGCDKFCT+CVVPYTRG EISR 
Sbjct: 128 KRSTETDMPAEAKFAALP-----KRRKSAPTAFLTVQEGCDKFCTYCVVPYTRGAEISRP 182

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
            S +V+EA+ L+  G  EITLLGQNVNAW G+   G       L  +L+    L R+RYT
Sbjct: 183 FSDLVEEAKLLVAGGAREITLLGQNVNAWAGEDDKGRPIGLDGLARALAAEPDLKRIRYT 242

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
           TSHP DM+D LI AHG+L+ LMP+LHLPVQ+G+DR+LK+MNR HTA  Y  +++RIR+ R
Sbjct: 243 TSHPNDMTDGLIAAHGELEKLMPFLHLPVQAGNDRVLKAMNRSHTADSYMALLERIRAAR 302

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           PDIA+S DFIVGFPGETD +F  T+ LVD +GYAQAFSFKYS R GTP + M   V   V
Sbjct: 303 PDIALSGDFIVGFPGETDAEFEDTLRLVDAVGYAQAFSFKYSARPGTPAATMENHVPVAV 362

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHN 446
             ERL  LQ  L   Q++FN A VG+  EVL+E+ GK  G+ +G+SPWLQSV   S    
Sbjct: 363 MDERLQRLQAALNRDQLAFNKASVGKTCEVLVERRGKHPGQWLGKSPWLQSVHF-SGEAE 421

Query: 447 IGDIIKVRITDVKISTLYGELV 468
           IGD++ V + +   +++ G L 
Sbjct: 422 IGDMVTVELIEAGPNSISGRLA 443


>gi|83595099|ref|YP_428851.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Rhodospirillum
           rubrum ATCC 11170]
 gi|123753019|sp|Q2RMT1|MIAB_RHORT RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|83578013|gb|ABC24564.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Rhodospirillum rubrum
           ATCC 11170]
          Length = 467

 Score =  497 bits (1280), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 238/445 (53%), Positives = 318/445 (71%), Gaps = 6/445 (1%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F+KSYGCQMNVYD+ RM D+    GY+ V+  D ADL++LNTCHIREKAAEKV+S L
Sbjct: 4   RKLFIKSYGCQMNVYDAGRMADVMAPLGYDLVSEADGADLVILNTCHIREKAAEKVFSDL 63

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR+R  K +   EG  +LV VAGCVAQAEG E++ R+ IV++VVGPQ Y+RLPE++ +  
Sbjct: 64  GRLRPFKEAMAAEGRRMLVAVAGCVAQAEGAELMARAKIVDMVVGPQAYHRLPEMVAKVE 123

Query: 145 FGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            G  RV+DTD+ +E KF+ L        +  G +AFL++QEGCDKFCTFCVVPYTRG E 
Sbjct: 124 RGAGRVLDTDFPIEPKFDFLPA-----PQAHGPSAFLSVQEGCDKFCTFCVVPYTRGAEY 178

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR ++ V+ EA  L + GV EITLLGQNVNA+ G+  DG       L  +L+EI G+ RL
Sbjct: 179 SRPVADVLREAALLAEGGVREITLLGQNVNAYHGEAPDGRTWGLGRLARALAEIPGVARL 238

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           RYTTSHPRD+ D LI AH ++  L P++HLPVQSGSDRIL +MNR H    YR+IIDR+R
Sbjct: 239 RYTTSHPRDVDDDLIAAHREVAALTPFIHLPVQSGSDRILAAMNRGHDVEGYRRIIDRLR 298

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           + R D+A SSDFIVGFPGE++ DF+AT+ L+D++ + QA+SFKYSPR GTP + +  Q+ 
Sbjct: 299 AARDDMAFSSDFIVGFPGESERDFQATLALIDEVRFIQAYSFKYSPRPGTPAAALSAQLP 358

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
           E  K+ RL+ LQ +L E Q +FN ACVG+ ++VL+++ G+  G+LVGRSPW+Q V L + 
Sbjct: 359 EAEKSARLIALQARLVEIQQAFNQACVGRPMDVLLDRPGRHAGQLVGRSPWMQPVHLEAP 418

Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468
              +G +  V +     ++L   LV
Sbjct: 419 AALLGTLAPVVVETATSNSLAARLV 443


>gi|315497214|ref|YP_004086018.1| RNA modification enzyme, miab family [Asticcacaulis excentricus CB
           48]
 gi|315415226|gb|ADU11867.1| RNA modification enzyme, MiaB family [Asticcacaulis excentricus CB
           48]
          Length = 470

 Score =  497 bits (1280), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 242/445 (54%), Positives = 313/445 (70%), Gaps = 6/445 (1%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++  +K+YGCQMNVYDS RM D+    GY   +  + ADL++LNTCHIREKAAEKVYS +
Sbjct: 25  KKLHIKTYGCQMNVYDSERMADLLRPLGYAVSDQAEGADLVLLNTCHIREKAAEKVYSEI 84

Query: 85  GRIRNLKNSRIKEG-GDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           GR++ ++  +   G G + + VAGCVAQAEGEEI+ R+P V++VVGPQ Y++LPEL+ R 
Sbjct: 85  GRLKVMRQEKEARGEGRMTIAVAGCVAQAEGEEIMNRAPAVDLVVGPQAYHQLPELIART 144

Query: 144 RFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
              K   +  D++ EDKF+ LS       +  G TAFLT+QEGCDKFCTFCVVPYTRG E
Sbjct: 145 TRAKGERLKADFAPEDKFDALST----ERQASGPTAFLTVQEGCDKFCTFCVVPYTRGAE 200

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR ++ +++EAR L   GV EITLLGQNVNA+ G+  DGE+ T   L+ +LSEI+GL R
Sbjct: 201 WSRPVASILEEARSLASKGVREITLLGQNVNAYNGREADGEESTLPRLMQALSEIEGLDR 260

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +RYTTSHP DM+D LI+AH +   +MPYLHLPVQSGSD+IL++MNR+H    Y  +I R+
Sbjct: 261 IRYTTSHPNDMTDELIRAHAENPAVMPYLHLPVQSGSDKILRAMNRKHGRQAYIDLIARL 320

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           ++  P+IA+S DFIVGFPGET+ DF  TMDL+  +GYA AFSFKYS R GTP + M  QV
Sbjct: 321 KAAVPNIALSGDFIVGFPGETEKDFEDTMDLIRTVGYASAFSFKYSKRPGTPAAAMPGQV 380

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
           DE V   RL  LQ  + EQ  +F  + VGQ I+VL EK G+   + VGRSPWL +V    
Sbjct: 381 DEAVADGRLQALQALINEQAQAFKASLVGQTIDVLFEKPGRYGQQAVGRSPWLHAVFAED 440

Query: 443 KNHNIGDIIKVRITDVKISTLYGEL 467
             H IG I+ V+I  V  ++L GEL
Sbjct: 441 AAHLIGQIVPVKIVGVGNNSLIGEL 465


>gi|209542258|ref|YP_002274487.1| (dimethylallyl)adenosine tRNA methylthiotransferase
           [Gluconacetobacter diazotrophicus PAl 5]
 gi|209529935|gb|ACI49872.1| RNA modification enzyme, MiaB family [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 469

 Score =  497 bits (1279), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 247/443 (55%), Positives = 316/443 (71%), Gaps = 2/443 (0%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
             V ++GCQMNVYDS RM D+    GY  V++ D AD+++LNTCHIR++AAEKV+S LGR
Sbjct: 22  LHVITWGCQMNVYDSARMTDVLRPLGYHPVDTPDTADMVILNTCHIRDRAAEKVFSELGR 81

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           +R +K +R  EG   ++ VAGCVAQAEG+EIL R+P V++V+GPQTY+RLPE++ RA   
Sbjct: 82  LRLVKEARATEGQQTVLAVAGCVAQAEGKEILARAPFVDIVLGPQTYHRLPEMVARAARA 141

Query: 147 KR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
              V+DTD+  E KF+ L       +   G+T+FLTIQEGCDKFC+FCVVPYTRG E SR
Sbjct: 142 AGAVIDTDFPAEQKFDFLPDAQAPQS-PGGITSFLTIQEGCDKFCSFCVVPYTRGAEASR 200

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            ++ V+ EAR++++ G  EITLLGQNVNA+ G+G DG     + L  +L+ I GL R+RY
Sbjct: 201 PVASVLREARRMVECGAREITLLGQNVNAYHGEGPDGRVWGLARLAEALAAIPGLARIRY 260

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
           TTSHPRDM   LI AH DL  LMP+LHLPVQSGSDRIL +MNR HTA +YR ++ R+R  
Sbjct: 261 TTSHPRDMDADLIAAHRDLPALMPFLHLPVQSGSDRILDAMNRGHTAADYRDLVLRLRDA 320

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
           RPDIA+SSDFIVG PGETD DF AT+ L+  +G+AQAFSFKYSPR GTP +    QV E+
Sbjct: 321 RPDIALSSDFIVGHPGETDADFEATLQLIRDVGFAQAFSFKYSPRPGTPAAGAPLQVAED 380

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445
           VK  RL  LQ  LR QQ +FND  VG ++ VL   HG++ G+L GRSP+LQ V +   + 
Sbjct: 381 VKDARLQALQALLRTQQDAFNDGTVGHVVPVLFTGHGRKAGQLSGRSPYLQPVHVEGPDS 440

Query: 446 NIGDIIKVRITDVKISTLYGELV 468
            IG I  V I +   ++L G LV
Sbjct: 441 LIGQIANVEIRERYTNSLSGTLV 463


>gi|144899561|emb|CAM76425.1| tRNA-i(6)A37 modification enzyme MiaB [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 448

 Score =  497 bits (1279), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 242/451 (53%), Positives = 328/451 (72%), Gaps = 19/451 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ FVK+YGCQMNVYDS RM D+    GY   +S +DAD+++LNTCHIREKA+EKV+S L
Sbjct: 3   KKLFVKTYGCQMNVYDSARMADVLAPLGYGPGDSPEDADMVILNTCHIREKASEKVFSEL 62

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR+R +K    K+GG L++ VAGCVAQAEGEEILRR+P V++V+GPQTY+RLPE++ +A 
Sbjct: 63  GRLRQIKTE--KDGG-LIIAVAGCVAQAEGEEILRRAPFVDIVLGPQTYHRLPEMVAQAS 119

Query: 145 -------FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197
                   G  V+DT++ +E KF+ L        R  G  AFL++QEGCDKFCTFCVVPY
Sbjct: 120 RAALANGNGGAVLDTEFPIEPKFDHLP-----EPRADGPAAFLSVQEGCDKFCTFCVVPY 174

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257
           TRG E SR    ++DEA+KL+D GV EITLLGQNVNAW G   DG+  +F  L+  L+++
Sbjct: 175 TRGGEYSRPSQAILDEAKKLVDQGVVEITLLGQNVNAWHGD--DGK--SFGWLIRQLAKL 230

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
            GL R+R+TTSHPRDM D LI AHG++  LMP+LHLPVQ+GS+R+L++MNRRH    Y  
Sbjct: 231 DGLARIRFTTSHPRDMDDDLIDAHGEVKKLMPFLHLPVQAGSNRMLEAMNRRHDRDFYFG 290

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
           ++D++R+ RPD+A+SSDFIVGFPGETD DF  T+DLV ++G+   +SFKYS R GTP + 
Sbjct: 291 LVDKLRAARPDLALSSDFIVGFPGETDADFADTLDLVRRVGFVNTYSFKYSARPGTPAAI 350

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQS 437
           M  QVDE VK  RL  L   L+EQ   FN  C+G  + V++++ GK  G+L+GRSP++Q 
Sbjct: 351 MPNQVDEAVKEARLAQLMDLLQEQTNHFNQNCLGMEMAVVLDRQGKYPGQLIGRSPYMQP 410

Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           V +++  H  G ++ VRI+++   +L GE++
Sbjct: 411 VHVDNVAHLAGHLVTVRISEIHPRSLKGEII 441


>gi|254295429|ref|YP_003061452.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Hirschia
           baltica ATCC 49814]
 gi|254043960|gb|ACT60755.1| RNA modification enzyme, MiaB family [Hirschia baltica ATCC 49814]
          Length = 455

 Score =  497 bits (1279), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 246/456 (53%), Positives = 327/456 (71%), Gaps = 16/456 (3%)

Query: 20  QCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEK 79
           Q   P++ F+K+YGCQMNVYDS RM+D+    GY   ++ + ADL+VLNTCHIREKA EK
Sbjct: 6   QIPSPKKLFIKTYGCQMNVYDSDRMKDVLKPLGYAPTDAPEGADLVVLNTCHIREKATEK 65

Query: 80  VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL 139
           V+S LG+++ +K      GG + + VAGCVAQAEG EI+RR P V++V+GPQ+Y++LPE+
Sbjct: 66  VFSELGQLKRMKADT---GGKMTIAVAGCVAQAEGAEIMRRQPAVDLVLGPQSYHKLPEM 122

Query: 140 LER-ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKR---GVTAFLTIQEGCDKFCTFCVV 195
           + + AR    V++T++ VE+KF+ L I       KR   G++A ++IQEGCDKFCTFCVV
Sbjct: 123 IAKVARQTGDVLETEFDVEEKFDALPI-------KRDADGMSALVSIQEGCDKFCTFCVV 175

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS--DLLYS 253
           PYTRG E SR++  +V E R L   GV EITLLGQNVNA+ G   DG +  +    LL  
Sbjct: 176 PYTRGAEFSRNVDAIVAEVRGLAAQGVKEITLLGQNVNAFHGAAPDGGEGEWGLGQLLRH 235

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
           L++I GL RLR+TTSHP+DM + LI A+G+LDVLMPY HLPVQ+GS++ILKSMNR HTA 
Sbjct: 236 LAKIGGLERLRFTTSHPKDMEEDLITAYGELDVLMPYFHLPVQAGSNKILKSMNRSHTAE 295

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
            Y + + +IR+ RPD+A++SDFIVGFPGETD+DF ATMDLV ++ YA A+SFKYS R GT
Sbjct: 296 SYIETMKQIRAQRPDVALASDFIVGFPGETDEDFEATMDLVREVKYASAYSFKYSRRPGT 355

Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSP 433
           PG+ M  QVDE VK ERL  LQ  +REQ   FN+  +G+ + VL   +GK +G+ +G+SP
Sbjct: 356 PGAEMFGQVDEAVKDERLQRLQALIREQTTEFNNNQIGKTLPVLFTHNGKLEGQALGKSP 415

Query: 434 WLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
           +LQSV + +  H IG I+ V I    +S+L G L  
Sbjct: 416 YLQSVHVENAQHLIGKIVDVEIVGATLSSLTGVLTT 451


>gi|39933525|ref|NP_945801.1| (dimethylallyl)adenosine tRNA methylthiotransferase
           [Rhodopseudomonas palustris CGA009]
 gi|81564244|sp|Q6NCM4|MIAB_RHOPA RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|39647371|emb|CAE25892.1| tRNA-i(6)A37 modification enzyme MiaB [Rhodopseudomonas palustris
           CGA009]
          Length = 463

 Score =  496 bits (1278), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 237/445 (53%), Positives = 326/445 (73%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P++  +KSYGCQMNVYD+ RM D    +G+    ++DDADL++LNTCHIREKA+EKVYS 
Sbjct: 4   PRKLHIKSYGCQMNVYDAQRMVDALAPEGFVETANVDDADLVILNTCHIREKASEKVYSE 63

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR+R  ++     G  + + VAGCVAQAEG EI+RR+P+V+VVVGPQ+Y+ LP+LL +A
Sbjct: 64  LGRLRVARDEAANHGRRMQIAVAGCVAQAEGAEIIRRAPVVDVVVGPQSYHNLPQLLAKA 123

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
               R ++T++ +EDKF  L        R RG++AF+T+QEGCDKFCTFCVVPYTRG E+
Sbjct: 124 EQHGRALETEFPIEDKFGVLPQPAPDAIRARGISAFVTVQEGCDKFCTFCVVPYTRGAEM 183

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR ++ +V++ ++L +NGV E+TL+GQNVNA+ G G D    +   L+  L+EI G+VRL
Sbjct: 184 SRPVAAIVEDVKRLAENGVREVTLIGQNVNAYHGDGPDRLAWSLGRLVRRLAEIPGIVRL 243

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           RY+TSHP D++D L+ AH DL  LMP++HLPVQSGSDRIL +MNR+HTA +YR++IDR R
Sbjct: 244 RYSTSHPNDVNDDLLAAHRDLPALMPFVHLPVQSGSDRILAAMNRKHTADDYRRVIDRFR 303

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
                IA SSDFIVGFPGET+ DF AT+ LV +IGYA A+SFKYSPR GTP ++M E V 
Sbjct: 304 LASEAIAFSSDFIVGFPGETERDFSATLALVAQIGYAGAYSFKYSPRPGTPAADMAEMVP 363

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
             V  ERL  LQ+ + +QQ +FN A +G+ +EVL E+ G++ G++VGR+ +LQ   + + 
Sbjct: 364 AAVMDERLEQLQQLIDQQQSAFNKAAIGRTVEVLFERAGRKPGQIVGRTAYLQPAHVMAP 423

Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468
           +  IG ++ VR+  ++  +L GEL 
Sbjct: 424 DSIIGKVLPVRVDSLERYSLLGELA 448


>gi|254463508|ref|ZP_05076924.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Rhodobacterales bacterium
           HTCC2083]
 gi|206680097|gb|EDZ44584.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Rhodobacteraceae
           bacterium HTCC2083]
          Length = 440

 Score =  496 bits (1278), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 237/444 (53%), Positives = 322/444 (72%), Gaps = 8/444 (1%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F+K+YGCQMNVYDS RM +   + GY    + DDAD+I+LNTCHIREKAAEK+YS L
Sbjct: 5   KKLFIKTYGCQMNVYDSERMSEALGASGYTETQTPDDADMILLNTCHIREKAAEKIYSEL 64

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR+++LK ++     DL + VAGCVAQAEG EI+RR P V++VVGPQ+Y+RL E+  + R
Sbjct: 65  GRMKSLKTAK----PDLKIGVAGCVAQAEGAEIMRRQPAVDLVVGPQSYHRLAEMEIKTR 120

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G++ +DTD+ +EDKFE L         +R   AFLT+QEGCDKFC FCVVPYTRG E S
Sbjct: 121 RGEKALDTDFPIEDKFEALKHRPKA---RRAPAAFLTVQEGCDKFCAFCVVPYTRGAETS 177

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R + ++VDEA+ L++ GV EITLLGQNVNA+ G G DG +   + L++ L ++ GL R+R
Sbjct: 178 RPVQRIVDEAKNLVERGVREITLLGQNVNAYHGTGPDGNEWGLAQLIWELDKVDGLARIR 237

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +TTSHP DM D LI AH     LMPYLHLPVQSGSDRILK MNR HTA  Y ++I+RIR+
Sbjct: 238 FTTSHPNDMQDDLIDAHAHCAKLMPYLHLPVQSGSDRILKRMNRSHTADSYLRLIERIRA 297

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
            RPDI +S DFIVGFP ET++DF+AT+DL+ ++ Y  A+SFKYS R GTP +    QV++
Sbjct: 298 ARPDILMSGDFIVGFPEETEEDFQATLDLIKEVRYGYAYSFKYSTRPGTPAAERA-QVED 356

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
            V AERL  LQ  + +QQV   ++ VG+ + +LIEK G++ G++VG+S +L +V +N  +
Sbjct: 357 AVAAERLQRLQALITQQQVEIQNSMVGRDVTILIEKQGRDSGQMVGKSEYLHAVHINDCD 416

Query: 445 HNIGDIIKVRITDVKISTLYGELV 468
              GD+++ RIT+   ++L G ++
Sbjct: 417 AIPGDLVQARITEAVRNSLAGTMI 440


>gi|332188733|ref|ZP_08390446.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Sphingomonas sp. S17]
 gi|332011239|gb|EGI53331.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Sphingomonas sp. S17]
          Length = 440

 Score =  496 bits (1278), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 247/446 (55%), Positives = 313/446 (70%), Gaps = 14/446 (3%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+ F VKS+GCQMNVYD  RM ++  +QG    +    ADL+VLNTCHIREKA EKVYS 
Sbjct: 5   PKTFHVKSFGCQMNVYDGERMAELMAAQGLSATDDASAADLVVLNTCHIREKATEKVYSD 64

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +GR+R       ++G   ++ VAGCVAQAEG EI+RR+  V+VVVGPQ Y+ LPEL+ +A
Sbjct: 65  IGRLRKDAG---EQGRKPMIAVAGCVAQAEGAEIVRRAK-VDVVVGPQAYHNLPELVAKA 120

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             G+  +DTD  VE KF  L        RK G +AFLT+QEGCDKFCT+CVVPYTRG E+
Sbjct: 121 VAGEAALDTDMPVESKFAHLP-----GRRKVGPSAFLTVQEGCDKFCTYCVVPYTRGAEV 175

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SRS S +VDEA+ L+D G  EITLLGQNVNAW     D +      L+  L  I GL R+
Sbjct: 176 SRSFSAIVDEAKALVDAGAREITLLGQNVNAWN----DADDRGLHGLIRELDRISGLHRI 231

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           RYTTSHP DM+  LI AH D++ LMP+LHLPVQSGSDRILK+MNR+HT   Y ++IDR+R
Sbjct: 232 RYTTSHPNDMTQGLIDAHRDVESLMPFLHLPVQSGSDRILKAMNRQHTRDSYMRVIDRVR 291

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           + RPDIA+S DFIVGFPGET+++F  T+ LVD +G+AQAFSFKYSPR GTP + M +Q+ 
Sbjct: 292 AARPDIALSGDFIVGFPGETEEEFADTLSLVDAMGHAQAFSFKYSPRPGTPAATMADQLP 351

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
             V  +RL  LQ  L   Q +FN A VG+   VLIE+ GK  G+++G+SPWLQSV L   
Sbjct: 352 AEVMDDRLQRLQAALNRDQHAFNAASVGRTCTVLIERRGKLPGQMLGKSPWLQSVHLIG- 410

Query: 444 NHNIGDIIKVRITDVKISTLYGELVV 469
           +H IGD+I+V +     ++L G+  V
Sbjct: 411 DHQIGDLIEVELVAAGPNSLTGQAKV 436


>gi|83854736|ref|ZP_00948266.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Sulfitobacter sp.
           NAS-14.1]
 gi|83842579|gb|EAP81746.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Sulfitobacter sp.
           NAS-14.1]
          Length = 439

 Score =  496 bits (1277), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 243/441 (55%), Positives = 313/441 (70%), Gaps = 9/441 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
            P++ F+K+YGCQMNVYDS RM +      Y    +  DAD+I+LNTCHIREKAAEKVYS
Sbjct: 3   APKKLFIKTYGCQMNVYDSERMAESL-GDNYVETKTAADADMILLNTCHIREKAAEKVYS 61

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            LGR++ LK        DL + VAGCVAQAEG EI+RR P V++VVGPQ+Y+RLP +  R
Sbjct: 62  ELGRLKPLKEL----NPDLKIGVAGCVAQAEGAEIMRRQPAVDLVVGPQSYHRLPAMEAR 117

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            R GK  +DTD+  EDKFE+L    G     R  +AFLT+QEGCDKFC FCVVPYTRG E
Sbjct: 118 VRSGKTALDTDFPEEDKFEKLK---GRGKATRAPSAFLTVQEGCDKFCAFCVVPYTRGAE 174

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR  ++V+ EAR+L++ GV E+TLLGQNVNA+ G G +G   T + L+  L++I GL R
Sbjct: 175 VSRPATRVLTEARELVERGVREVTLLGQNVNAYHGVGEEGADYTLARLIKELAKIDGLER 234

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +RYTTSHP DM D LI AHG++D LMPYLHLPVQSGSDRILK MNR HTA  Y ++I+RI
Sbjct: 235 IRYTTSHPNDMDDALIAAHGEIDKLMPYLHLPVQSGSDRILKRMNRSHTAESYLRLIERI 294

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+ RPDI +S DFIVGFP ET  DF ATM+LV ++ Y  A+SFKYS R GTP +    QV
Sbjct: 295 RAARPDIVMSGDFIVGFPEETHTDFEATMELVREVKYGYAYSFKYSTRPGTPAAER-PQV 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
           +  +  ERL  LQ  +  QQ    ++ VG+ + VL+EK G+E G++VG+S +L SV ++ 
Sbjct: 354 EAAIADERLQRLQGLITGQQREIQNSMVGRDVSVLVEKAGREAGQMVGKSEYLHSVHIDE 413

Query: 443 KNHNIGDIIKVRITDVKISTL 463
               +GD+++VRI D K ++L
Sbjct: 414 AQAEVGDVVRVRIVDAKTNSL 434


>gi|296282491|ref|ZP_06860489.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Citromicrobium
           bathyomarinum JL354]
          Length = 445

 Score =  496 bits (1277), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 234/445 (52%), Positives = 313/445 (70%), Gaps = 11/445 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
            P+ + VKS+GCQMNVYD  RM ++  +QG       ++ADL+VLNTCHIREKA EKVYS
Sbjct: 6   TPKTYRVKSFGCQMNVYDGERMGELLAAQGITPAPEGEEADLVVLNTCHIREKATEKVYS 65

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +GR+R       ++G   L+ VAGCVAQAEG EI+ R+P V++VVGPQ Y  LP +LER
Sbjct: 66  DIGRLRR------EDGSSPLIAVAGCVAQAEGREIMTRAPAVSMVVGPQAYQNLPAMLER 119

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           A  GKR  + D + E KF  L        R     AFLTIQEGCDKFCT+CVVPYTRG E
Sbjct: 120 AVSGKRTTEMDLAAEAKFAGLP-----QRRTAPAAAFLTIQEGCDKFCTYCVVPYTRGAE 174

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           ISR  +++V EA++L++ G  EITLLGQNV+AW G+   G +   + L+  L++I GL R
Sbjct: 175 ISRPFAELVAEAQRLVEGGAREITLLGQNVSAWSGEDAKGHRTGLAGLVRELAKIDGLAR 234

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +RYTTSHP DM + +I AHG+LD LMPYLHLPVQ+G++R+LK+MNR HT   Y Q+++R 
Sbjct: 235 IRYTTSHPADMDEEIIAAHGELDKLMPYLHLPVQAGNNRVLKAMNRSHTVESYLQLLERF 294

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+ RPD+A+S DFIVGFPGET+ +F  T+ +VD++ YAQAFSFKYSPR GTP + M  Q+
Sbjct: 295 RAARPDLALSGDFIVGFPGETEAEFEDTLKVVDEVRYAQAFSFKYSPRPGTPAAGMDGQI 354

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
             +V  +RL  LQ +L   Q +FN A V +  EVL+E+ GK  G+ +G+SPWLQSV    
Sbjct: 355 APDVMKDRLARLQDRLNRDQHAFNTASVSKTCEVLVERKGKLPGQWLGKSPWLQSVFFER 414

Query: 443 KNHNIGDIIKVRITDVKISTLYGEL 467
           ++  +GD+++VR+ +   ++L GEL
Sbjct: 415 EDTQVGDLVQVRLEEAGPNSLRGEL 439


>gi|163739041|ref|ZP_02146454.1| tRNA-i(6)A37 modification enzyme MiaB [Phaeobacter gallaeciensis
           BS107]
 gi|161387846|gb|EDQ12202.1| tRNA-i(6)A37 modification enzyme MiaB [Phaeobacter gallaeciensis
           BS107]
          Length = 440

 Score =  495 bits (1275), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 248/449 (55%), Positives = 322/449 (71%), Gaps = 15/449 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
            P++ F+K+YGCQMNVYDS RM +    +GY    S DDAD+I+LNTCHIREKAAEKVYS
Sbjct: 3   APKKLFIKTYGCQMNVYDSERMAEALGGEGYVETKSPDDADMILLNTCHIREKAAEKVYS 62

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            LGR + LK     E  DL + VAGCVAQAEG+EI+RR P+V++VVGPQ+Y+RLPE+  +
Sbjct: 63  ELGRFKGLK----AEKPDLKIGVAGCVAQAEGQEIMRRQPLVDLVVGPQSYHRLPEMEAK 118

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNR---KRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           AR G++V+DTD+  EDKFE+L       NR   KRG TAFLT+QEGCDKFC FCVVPYTR
Sbjct: 119 AREGEKVLDTDFPEEDKFEKLK------NRPKAKRGPTAFLTVQEGCDKFCAFCVVPYTR 172

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G E+SR   +++ EA+ L++ GV EITLLGQNVNA+ G G +G+  T + L++ L ++ G
Sbjct: 173 GAEVSRPADRILREAQDLVERGVREITLLGQNVNAYHGAGPNGD-MTLAQLIWELDKVDG 231

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           L R+R+TTSHP DM D LI+AHG    LMPYLHLPVQ+GSD+ILK MNR HTA  Y ++I
Sbjct: 232 LERIRFTTSHPNDMQDDLIEAHGTCAKLMPYLHLPVQAGSDKILKRMNRAHTAESYLRLI 291

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
           +RIR+ RPDI IS DFIVGFP ET+ DF+AT+DLV+++ Y  A+SFKYS R GTP +   
Sbjct: 292 ERIRAARPDILISGDFIVGFPEETEADFQATLDLVEEVKYGTAYSFKYSTRPGTPAAER- 350

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV 439
            QVD     +RL  LQ  L  QQ    D+ VG+ + VL EK G+  G++VG+S +L +V 
Sbjct: 351 PQVDPKEADDRLQRLQALLTTQQREVQDSMVGRDVTVLFEKAGRFPGQMVGKSDYLHAVH 410

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
           +   +  IGD+ +VRI     ++L G L+
Sbjct: 411 VADCDRAIGDLARVRILSSGANSLAGALI 439


>gi|99080026|ref|YP_612180.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Ruegeria sp. TM1040]
 gi|123077818|sp|Q1GK98|MIAB_SILST RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|99036306|gb|ABF62918.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Ruegeria sp. TM1040]
          Length = 440

 Score =  495 bits (1274), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 248/446 (55%), Positives = 321/446 (71%), Gaps = 9/446 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
            P++ ++K+YGCQMNVYDS RM +    QGY    + DDAD+I+LNTCHIREKAAEKVYS
Sbjct: 3   APKKLYIKTYGCQMNVYDSERMAETLGGQGYVETQTPDDADMILLNTCHIREKAAEKVYS 62

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            LGR + LK     E  DL + VAGCVAQAEGEEI+RR P+V++VVGPQ+Y+RLPE+  +
Sbjct: 63  ELGRFKGLK----AEKPDLKIGVAGCVAQAEGEEIMRRQPLVDLVVGPQSYHRLPEMEAK 118

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           A  G++V+DTD+  EDKFE+L         KRG TAFLT+QEGCDKFC FCVVPYTRG E
Sbjct: 119 AGTGEKVLDTDFPEEDKFEKLKRRP---KAKRGPTAFLTVQEGCDKFCAFCVVPYTRGAE 175

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR + +V+ EA  L++ GV EITLLGQNVNA+ G G +G+  T + L++ L +I GL R
Sbjct: 176 VSRPVDRVLREAEDLVERGVREITLLGQNVNAYHGAGPNGD-MTLAQLIWELDKIDGLER 234

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP DM D LI+AHG    LMPYLHLPVQ+GSD+ILK MNR HTA  Y ++I+RI
Sbjct: 235 IRFTTSHPNDMMDDLIEAHGTCKKLMPYLHLPVQAGSDKILKRMNRSHTAESYIRLIERI 294

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+ RPDI IS DFIVGFP ET++DF+AT+DLV+++ Y  A+SFKYS R GTP +    QV
Sbjct: 295 RAARPDILISGDFIVGFPEETEEDFQATLDLVEEVKYGTAYSFKYSTRPGTPAAERA-QV 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
           D     +RL  LQ  L  QQ    D+ VG+ + VL EK G+  G++VG+S +L +V +  
Sbjct: 354 DPKEADDRLQRLQAVLTRQQREVQDSMVGRELGVLFEKAGRFAGQMVGKSDYLHAVHVAD 413

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
            +  IGD+ +VRI     ++L GEL+
Sbjct: 414 CDAKIGDLRRVRIVSSGANSLAGELI 439


>gi|259415579|ref|ZP_05739500.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Silicibacter sp.
           TrichCH4B]
 gi|259348809|gb|EEW60571.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Silicibacter sp.
           TrichCH4B]
          Length = 440

 Score =  495 bits (1274), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 246/447 (55%), Positives = 321/447 (71%), Gaps = 9/447 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
            P++ ++K+YGCQMNVYDS RM +    QGY    + DDAD+I+LNTCHIREKAAEKVYS
Sbjct: 3   APKKLYIKTYGCQMNVYDSERMAETLGGQGYVETKTPDDADMILLNTCHIREKAAEKVYS 62

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            LGR + LK     E  DL + VAGCVAQAEGEEI+RR P+V++VVGPQ+Y+RLPE+  +
Sbjct: 63  ELGRFKGLK----AEKPDLKIGVAGCVAQAEGEEIMRRQPLVDLVVGPQSYHRLPEMEAK 118

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           A  G++V+DTD+  EDKFE+L         KRG TAFLT+QEGCDKFC FCVVPYTRG E
Sbjct: 119 AGAGEKVLDTDFPEEDKFEKLKRRP---KAKRGPTAFLTVQEGCDKFCAFCVVPYTRGAE 175

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR   +++ EA  L++ GV EITLLGQNVNA+ G G +G+  T + L++ L +++GL R
Sbjct: 176 VSRPADRILREAEDLVERGVREITLLGQNVNAYHGAGPNGD-MTLAQLIWELDKVEGLER 234

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP DM D LI+AHG    LMPYLHLPVQ+GSD+ILK MNR HTA  Y ++I+RI
Sbjct: 235 IRFTTSHPNDMMDDLIEAHGTCAKLMPYLHLPVQAGSDKILKRMNRSHTAESYIRLIERI 294

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+ RPDI IS DFIVGFP ET++DF+AT+DLV+++ Y  A+SFKYS R GTP +    QV
Sbjct: 295 RAARPDILISGDFIVGFPEETEEDFQATLDLVEEVKYGTAYSFKYSTRPGTPAAERA-QV 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
           D     +RL  LQ  L  QQ    D+ VG+ + VL EK G+  G++VG+S +L +V +  
Sbjct: 354 DPKEADDRLQRLQALLTRQQREVQDSMVGRELGVLFEKKGRFPGQMVGKSDYLHAVHVAD 413

Query: 443 KNHNIGDIIKVRITDVKISTLYGELVV 469
            +  IGD+ +VRI     ++L GEL+ 
Sbjct: 414 CDAEIGDLRRVRIVSSGANSLAGELIA 440


>gi|254696401|ref|ZP_05158229.1| hypothetical protein Babob28_01463 [Brucella abortus bv. 2 str.
           86/8/59]
          Length = 388

 Score =  494 bits (1273), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 232/385 (60%), Positives = 297/385 (77%)

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S LGR+R ++++R  +G +L + VAGCVAQAEG+EILRR+P V++V+GPQTY+RLP  L 
Sbjct: 1   SALGRLRKMRDARAADGKELTIGVAGCVAQAEGQEILRRAPNVDLVIGPQTYHRLPNALA 60

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           R R G++VV+TDY++EDKFE L        RKRGV+AFLT+QEGCDKFCTFCVVPYTRG 
Sbjct: 61  RVRGGEKVVETDYAIEDKFEHLPAPRREETRKRGVSAFLTVQEGCDKFCTFCVVPYTRGS 120

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E+SRS+ Q+V EA +L D+GV E+TLLGQNVNAW G+G DG +    +LL+ L+ I G+ 
Sbjct: 121 EVSRSVKQIVAEAERLADSGVRELTLLGQNVNAWHGEGEDGREWGLGELLFRLARIPGIA 180

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           RLRYTTSHPRDM D LI AH DL  LMPYLHLPVQSGSDRILK+MNRRH A EY ++I+R
Sbjct: 181 RLRYTTSHPRDMDDSLIAAHRDLRQLMPYLHLPVQSGSDRILKAMNRRHKADEYLRLIER 240

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           IR+VRPD+A+S DFIVGFPGETD DF  TM LV  + YAQA+SFKYSPR GTPG+++ + 
Sbjct: 241 IRNVRPDMALSGDFIVGFPGETDQDFEDTMQLVRDVNYAQAYSFKYSPRPGTPGADLDDH 300

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           V+E VK ERL  LQ  L  QQ +F D+ +G+ ++VL+EK G+E G++VGRSPWL  V+++
Sbjct: 301 VEEAVKDERLQRLQALLSAQQYAFQDSMIGRKMDVLLEKPGREAGQMVGRSPWLLPVIID 360

Query: 442 SKNHNIGDIIKVRITDVKISTLYGE 466
                +GDII V+I     ++L  +
Sbjct: 361 DNKDRVGDIIHVKIVSTGTNSLIAQ 385


>gi|146279874|ref|YP_001170032.1| hypothetical protein Rsph17025_3872 [Rhodobacter sphaeroides ATCC
           17025]
 gi|229890629|sp|A4WZB3|MIAB_RHOS5 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|145558115|gb|ABP72727.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Rhodobacter sphaeroides
           ATCC 17025]
          Length = 436

 Score =  494 bits (1273), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 252/448 (56%), Positives = 320/448 (71%), Gaps = 22/448 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F+K+YGCQMNVYDS RM +   ++GY      ++AD+++LNTCHIREKAAEKVYS L
Sbjct: 5   RKLFIKTYGCQMNVYDSERMAEALGAKGYVLTEVAEEADMVLLNTCHIREKAAEKVYSDL 64

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR+R LK +R     DL + VAGCVAQAEGEEILRR P+V++VVGPQ+Y+RLP++LER  
Sbjct: 65  GRLRPLKVARP----DLKIGVAGCVAQAEGEEILRRMPLVDLVVGPQSYHRLPDMLERTE 120

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRK--RGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            G RV+DTD+  EDKFE L        RK  RG TAFLT+QEGCDKFC FCVVPYTRG E
Sbjct: 121 GGARVIDTDFPEEDKFEHLP------ERKALRGPTAFLTVQEGCDKFCAFCVVPYTRGAE 174

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR--GKGLDGEKCTFSDLLYSLSEIKGL 260
           +SR  ++++ EAR L++ GV EITLLGQNVNAW   G+GL G       L+  L+ I GL
Sbjct: 175 VSRPFARLMAEARALVEKGVREITLLGQNVNAWSNDGRGLGG-------LIRELARIDGL 227

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            RLRYTTSHP DM+D LI+AHG    LMPYLHLPVQSGSDRILK+MNR+H A +Y ++++
Sbjct: 228 ERLRYTTSHPNDMADDLIEAHGQEPKLMPYLHLPVQSGSDRILKAMNRKHAAEQYLRLVE 287

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           RIR+ RPDI ++SDFIVGFPGETD DF AT+ L+  +G+  AFSFKYS R GTP +   E
Sbjct: 288 RIRAARPDILLTSDFIVGFPGETDADFEATLALIRAVGFGSAFSFKYSARPGTPAAEKPE 347

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440
              E   A RL  LQ  L EQQ +   A VG+ + VL EK G+  G++VG+S +L +V +
Sbjct: 348 LPAELCDA-RLQTLQALLGEQQRAAQAAMVGRELGVLYEKAGRLPGQMVGKSDYLHAVHV 406

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                  GD+++VRIT    ++L GE +
Sbjct: 407 EDPGARPGDLVRVRITASGPNSLAGERI 434


>gi|329847364|ref|ZP_08262392.1| tRNA-i6A37 thiotransferase enzyme MiaB [Asticcacaulis biprosthecum
           C19]
 gi|328842427|gb|EGF91996.1| tRNA-i6A37 thiotransferase enzyme MiaB [Asticcacaulis biprosthecum
           C19]
          Length = 448

 Score =  493 bits (1270), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 241/447 (53%), Positives = 316/447 (70%), Gaps = 8/447 (1%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++  +K+YGCQMNVYDS RM D+    GYE  +  D ADL++LNTCHIREKAAEKVYS +
Sbjct: 2   KKLHIKTYGCQMNVYDSERMIDILRPLGYEVSDVADGADLVLLNTCHIREKAAEKVYSEI 61

Query: 85  GRIRNLKNSRIKEG-GDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           GR++ L+  +   G G + + VAGCVAQAEG EI+ R+P V++V+GPQ Y++LPEL+ R 
Sbjct: 62  GRLKELRGEKEARGEGRMTIAVAGCVAQAEGIEIMHRAPAVDLVIGPQAYHQLPELIART 121

Query: 144 RFGK-RVVDTDYSVEDKFERLSIVDGGYNRK-RGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
              K   +  D++ E KF+ L+      +R   G TAFLT+QEGCDKFCTFCVVPYTRG 
Sbjct: 122 HRAKGERLAADFAPEAKFDALT-----SDRTVTGPTAFLTVQEGCDKFCTFCVVPYTRGA 176

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR ++ ++DEA+ L   GV E+TLLGQNVNA+ G G DG+  T + L+Y+L++I G+ 
Sbjct: 177 EWSRPVAAILDEAQALAAKGVRELTLLGQNVNAFNGVGSDGQPSTLAKLMYALADIPGID 236

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           RLRYTTSHP DM D LI AH DL   MPYLHLPVQSGSD+IL++MNR+H    Y  ++ R
Sbjct: 237 RLRYTTSHPNDMGDDLIAAHRDLGAAMPYLHLPVQSGSDKILRAMNRKHGRQAYFDLVAR 296

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I++ RPD+A+S DFIVGFPGETD DF  T+DLV ++GYA AF+FKYSPR GTP ++M  Q
Sbjct: 297 IKAARPDLALSGDFIVGFPGETDKDFEDTLDLVRQVGYASAFTFKYSPRPGTPAASMPNQ 356

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           V E V  ERL  L   + EQQ +F    VG+ +++L EK G+   + +GRSP+LQSV + 
Sbjct: 357 VPEAVMDERLQTLNALIIEQQQAFKATLVGKTLDILFEKPGRRDNQAIGRSPYLQSVYVE 416

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
              H IG I+ VRI  V  ++L G L+
Sbjct: 417 DARHLIGQIVPVRIVAVGNNSLQGALL 443


>gi|229890666|sp|Q5LLM0|MIAB_SILPO RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
          Length = 439

 Score =  493 bits (1269), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 243/445 (54%), Positives = 316/445 (71%), Gaps = 9/445 (2%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P++ F+K+YGCQMNVYDS RM +    QGY    S +DAD+I+LNTCHIREKAAEKVYS 
Sbjct: 4   PKKLFIKTYGCQMNVYDSERMAEALGGQGYVETQSAEDADMILLNTCHIREKAAEKVYSE 63

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK ++     DL + VAGCVAQAEGEEI+RR P+V++VVGPQ+Y+RLPEL  + 
Sbjct: 64  LGRFKGLKAAKP----DLKIGVAGCVAQAEGEEIMRRQPLVDLVVGPQSYHRLPELEAKT 119

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           R G++ +DTD+  EDKFE+L    G    KRG TAFLT+QEGCDKFC FCVVPYTRG E+
Sbjct: 120 RAGEKALDTDFPEEDKFEKLK---GRPKAKRGPTAFLTVQEGCDKFCAFCVVPYTRGAEV 176

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR   +++ EA +L++ GV EITLLGQNVNA+ G G +G+  T + L++ L +I GL R+
Sbjct: 177 SRPADRILREANELVERGVREITLLGQNVNAYHGAGPNGD-MTLAGLIWELDKIDGLERI 235

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+TTSHP DM+D LI+AHG    LMPYLHLPVQ+GSD+ILK MNR HTA  Y ++I+RIR
Sbjct: 236 RFTTSHPNDMADDLIEAHGTCAKLMPYLHLPVQAGSDKILKRMNRSHTAESYLRLIERIR 295

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           + RPDI +S DFIVGFP ET+ DF+ T+DLV+++ Y  A+SFKYS R GTP +    QVD
Sbjct: 296 AARPDIVMSGDFIVGFPEETEADFQDTLDLVEQVRYGYAYSFKYSTRPGTPAAERA-QVD 354

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
                +RL  LQ  +   Q    D  VG+ + VL EK G++ G++VG+S +L +V +   
Sbjct: 355 PAEADDRLQRLQAVITRHQREIQDGMVGREVSVLFEKPGRQPGQMVGKSEYLHAVHVQDP 414

Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468
               G I +VRI     ++L GEL 
Sbjct: 415 GLEAGQIARVRIVASGANSLAGELA 439


>gi|56708793|ref|YP_164834.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Ruegeria
           pomeroyi DSS-3]
 gi|56680478|gb|AAV97143.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Ruegeria pomeroyi DSS-3]
          Length = 462

 Score =  493 bits (1269), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 243/445 (54%), Positives = 316/445 (71%), Gaps = 9/445 (2%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P++ F+K+YGCQMNVYDS RM +    QGY    S +DAD+I+LNTCHIREKAAEKVYS 
Sbjct: 27  PKKLFIKTYGCQMNVYDSERMAEALGGQGYVETQSAEDADMILLNTCHIREKAAEKVYSE 86

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK ++     DL + VAGCVAQAEGEEI+RR P+V++VVGPQ+Y+RLPEL  + 
Sbjct: 87  LGRFKGLKAAKP----DLKIGVAGCVAQAEGEEIMRRQPLVDLVVGPQSYHRLPELEAKT 142

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           R G++ +DTD+  EDKFE+L    G    KRG TAFLT+QEGCDKFC FCVVPYTRG E+
Sbjct: 143 RAGEKALDTDFPEEDKFEKLK---GRPKAKRGPTAFLTVQEGCDKFCAFCVVPYTRGAEV 199

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR   +++ EA +L++ GV EITLLGQNVNA+ G G +G+  T + L++ L +I GL R+
Sbjct: 200 SRPADRILREANELVERGVREITLLGQNVNAYHGAGPNGD-MTLAGLIWELDKIDGLERI 258

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+TTSHP DM+D LI+AHG    LMPYLHLPVQ+GSD+ILK MNR HTA  Y ++I+RIR
Sbjct: 259 RFTTSHPNDMADDLIEAHGTCAKLMPYLHLPVQAGSDKILKRMNRSHTAESYLRLIERIR 318

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           + RPDI +S DFIVGFP ET+ DF+ T+DLV+++ Y  A+SFKYS R GTP +    QVD
Sbjct: 319 AARPDIVMSGDFIVGFPEETEADFQDTLDLVEQVRYGYAYSFKYSTRPGTPAAERA-QVD 377

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
                +RL  LQ  +   Q    D  VG+ + VL EK G++ G++VG+S +L +V +   
Sbjct: 378 PAEADDRLQRLQAVITRHQREIQDGMVGREVSVLFEKPGRQPGQMVGKSEYLHAVHVQDP 437

Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468
               G I +VRI     ++L GEL 
Sbjct: 438 GLEAGQIARVRIVASGANSLAGELA 462


>gi|77465601|ref|YP_355104.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Rhodobacter sphaeroides
           2.4.1]
 gi|123757716|sp|Q3IW81|MIAB_RHOS4 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|77390019|gb|ABA81203.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Rhodobacter sphaeroides
           2.4.1]
          Length = 436

 Score =  493 bits (1268), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 251/446 (56%), Positives = 320/446 (71%), Gaps = 22/446 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F+K+YGCQMNVYDS RM +   ++GY      ++AD+++LNTCHIREKAAEKVYS L
Sbjct: 5   RKLFIKTYGCQMNVYDSERMAEALGAKGYVLTEVAEEADMVLLNTCHIREKAAEKVYSDL 64

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR+R LK ++     DL + VAGCVAQAEGEEIL+R P+V++VVGPQ+Y+RLP++LER  
Sbjct: 65  GRLRPLKTAKP----DLKIGVAGCVAQAEGEEILKRMPLVDLVVGPQSYHRLPDMLERTE 120

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRK--RGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            G RVVDTD+  EDKF+ L        RK  RG  AFLT+QEGCDKFC FCVVPYTRG E
Sbjct: 121 GGARVVDTDFPEEDKFDHLP------ERKATRGPAAFLTVQEGCDKFCAFCVVPYTRGAE 174

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR--GKGLDGEKCTFSDLLYSLSEIKGL 260
           +SR  ++++ EAR L++ GV EITLLGQNVNAW   G+GL G       L+  L+ I GL
Sbjct: 175 VSRPFARLMAEARGLVERGVREITLLGQNVNAWSNDGRGLGG-------LIRELARIDGL 227

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            RLRYTTSHP DM+D LI+AHG    LMPYLHLPVQSGSDRILK+MNR+HTA  Y ++I+
Sbjct: 228 ERLRYTTSHPNDMADDLIEAHGAEPKLMPYLHLPVQSGSDRILKAMNRKHTAEHYLRLIE 287

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           RIR+ RPDI ++SDFIVGFPGET+ DF AT+DL+  +G+  AFSFKYS R GTP +   E
Sbjct: 288 RIRAARPDILLTSDFIVGFPGETEADFEATLDLIRAVGFGSAFSFKYSARPGTPAAEKPE 347

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440
              E   A RL  LQ  + EQQ +   A VG+ + VL EK G+  G++VG+S  L +V +
Sbjct: 348 LPAEVCDA-RLQRLQALVTEQQRAAQMAMVGREVGVLYEKAGRLPGQMVGKSDHLHAVHV 406

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGE 466
             K   +GD+++VRIT    ++L GE
Sbjct: 407 EDKAGQVGDLVRVRITASAPNSLAGE 432


>gi|229890684|sp|Q5FPF1|MIAB_GLUOX RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
          Length = 475

 Score =  493 bits (1268), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 242/448 (54%), Positives = 318/448 (70%), Gaps = 3/448 (0%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
            P+   V ++GCQMNVYDS RM D+    GY  V   +DAD+++LNTCHIRE+A EKV+S
Sbjct: 22  APRGLHVITWGCQMNVYDSARMADVLRPLGYGPVERPEDADMVILNTCHIRERATEKVFS 81

Query: 83  FLGRIRNLKNSRIKEGGD-LLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
            LGR+R +++ R+  G D  ++ VAGCVAQAEGE IL R+P V++V+GPQTY++LPE++ 
Sbjct: 82  ELGRLRKIRDERMSNGADRTIIAVAGCVAQAEGEVILTRAPYVDLVLGPQTYHKLPEMVA 141

Query: 142 RARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           RA       ++TD+ VE KF+ L   D     +  +TAFLTIQEGCDKFC+FCVVPYTRG
Sbjct: 142 RAARAGGAVIETDFPVEQKFDFLP-TDAAPQTQGNLTAFLTIQEGCDKFCSFCVVPYTRG 200

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E SR ++ V+ EAR++ ++GV EITLLGQNVNA+ G    G   T + L+  L++I GL
Sbjct: 201 AETSRPVASVLAEARRMAESGVREITLLGQNVNAYHGDDGKGGSETLAGLVEQLAQIPGL 260

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+RY TSHPRD+   LI AH D   LMP+LHLPVQSGSDRILK+MNR HTA EYR+ + 
Sbjct: 261 GRIRYMTSHPRDVDQSLIDAHRDNPALMPFLHLPVQSGSDRILKAMNRGHTADEYRESVR 320

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R  RPD+A+SSDFIVG PGET++DF ATM LV  IG+A A+SFKYSPR GTP +    
Sbjct: 321 KLREARPDLALSSDFIVGHPGETEEDFEATMQLVRDIGFAMAYSFKYSPRPGTPAAGQPM 380

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440
           QV E+VK  RL  LQ  LREQQ +FN   VG + E+L+   G++ G++ GRSP+LQ V  
Sbjct: 381 QVPEDVKDRRLAELQALLREQQDAFNADMVGTVQEILVTNRGRKPGQIAGRSPYLQPVHF 440

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
           +  +H IG  +KV IT  + ++L G L+
Sbjct: 441 DGPDHLIGSTVKVAITTRRTNSLGGTLI 468


>gi|51473976|ref|YP_067733.1| tRNA-methylthiotransferase (MiaB protein) [Rickettsia typhi str.
           Wilmington]
 gi|81389933|sp|Q68VU1|MIAB_RICTY RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|51460288|gb|AAU04251.1| tRNA-methylthiotransferase (MiaB protein) [Rickettsia typhi str.
           Wilmington]
          Length = 445

 Score =  493 bits (1268), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 235/447 (52%), Positives = 331/447 (74%), Gaps = 7/447 (1%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ ++K+YGCQMNVYDS++++D+ +  GYE    + +AD+I+LNTCHIREKAAEK YS L
Sbjct: 3   KKLYIKTYGCQMNVYDSVKIQDLLYPFGYESTEDIKEADIIILNTCHIREKAAEKTYSEL 62

Query: 85  GRIRNLKNSRIKEG-GDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           GRI+ L+N+R +EG    ++VVAGCVAQAEGE I  R+P V++VVGPQ+YY LPEL+ + 
Sbjct: 63  GRIKKLQNTRKQEGLNPAIIVVAGCVAQAEGEVIFTRTPYVDIVVGPQSYYNLPELISKV 122

Query: 144 -RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            R  K ++D D+  E KF+ L   +  Y +  G ++F+++QEGCDKFCTFCVVPYTRG E
Sbjct: 123 VRHEKHLIDLDFVEEAKFDNLP--EQLYTQ--GASSFISVQEGCDKFCTFCVVPYTRGAE 178

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SRS+ QV  E+ K++ N   EI LLGQNVNA+ GKG   +  T +DLL  L++I  L R
Sbjct: 179 FSRSVEQVYRESLKVVSNDTKEIILLGQNVNAYHGKGPKDKIFTLADLLKHLAQIPNLER 238

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LRY TSHP DM+D LIK HG    LMP+LHLPVQSGS++ILK+MNR+H    Y  II+R+
Sbjct: 239 LRYMTSHPIDMTDDLIKLHGTEPKLMPFLHLPVQSGSNKILKAMNRKHDRDYYFNIINRL 298

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R  R DI +SSDFIVGFPGET+ DF  T+DLV ++ Y Q +SFKYSPR GTPG+   +Q+
Sbjct: 299 REARSDIVLSSDFIVGFPGETEKDFEDTLDLVQRVKYGQCYSFKYSPRPGTPGAIRTDQI 358

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
            E++K++RL  LQK+L  QQ++FN++CVG  ++VL ++ GK + +++G++P++QSV +++
Sbjct: 359 PEHIKSKRLTILQKELATQQLAFNESCVGSTMKVLFDRDGKFEDQIIGKTPYMQSVYIHN 418

Query: 443 KNHN-IGDIIKVRITDVKISTLYGELV 468
            N + +G I+ V IT   +++L GE++
Sbjct: 419 PNKSLLGKIVDVIITKAALNSLTGEIL 445


>gi|326386707|ref|ZP_08208328.1| tRNA-i(6)A37 modification enzyme MiaB [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326208760|gb|EGD59556.1| tRNA-i(6)A37 modification enzyme MiaB [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 445

 Score =  492 bits (1267), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 237/443 (53%), Positives = 310/443 (69%), Gaps = 12/443 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
            P+ F VKS+GCQMNVYD  RM ++  +QG   V+  + ADL+VLNTCHIREKA EKVYS
Sbjct: 6   TPRTFHVKSFGCQMNVYDGERMAELLAAQGMTAVDEREAADLVVLNTCHIREKATEKVYS 65

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +GR+R       ++G + L+ VAGCVAQAEGEEI+ R+P V VVVGPQ Y+RLP+++  
Sbjct: 66  DIGRLRR------EDGSNPLIAVAGCVAQAEGEEIMTRAPQVRVVVGPQAYHRLPDMVAA 119

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           A  G R  +TD   E KF  L        RK G +AFLTIQEGCDKFCT+CVVPYTRG E
Sbjct: 120 AASGTRETETDMPAEAKFAALP-----QRRKSGPSAFLTIQEGCDKFCTYCVVPYTRGAE 174

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           ISR  + +V+EAR L++ G  EITLLGQNVNAW G+   G     + L   L+ +  L R
Sbjct: 175 ISRPYADLVEEARLLVEGGAREITLLGQNVNAWHGEDDKGRTIGLAGLAAELARLPDLAR 234

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +RYTTSHP DM D LI+AHG  D LMP+LHLPVQSG+DR+LK+MNR H+A  Y +II+R+
Sbjct: 235 IRYTTSHPADMDDALIEAHGTNDKLMPFLHLPVQSGNDRVLKAMNRSHSAESYLKIIERV 294

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+ RPDIA+S DFIVGFPGET+ +F  T+ L+D   YAQAFSFKYSPR GTP + M +Q+
Sbjct: 295 RAARPDIALSGDFIVGFPGETEAEFADTLALIDATRYAQAFSFKYSPRPGTPAATMDDQI 354

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
              +  +RL  LQ  +   Q++FN A VG+  +VLIE+ G++ G+ +G+SPWLQSV    
Sbjct: 355 AAEIMDDRLKRLQTAITRDQLAFNRASVGKRCQVLIERRGRQPGQWLGKSPWLQSVHFTD 414

Query: 443 KNHNIGDIIKVRITDVKISTLYG 465
           +   IGD+++V + +   +++ G
Sbjct: 415 EA-AIGDLVEVELIEAGPNSIAG 436


>gi|157826266|ref|YP_001493986.1| hypothetical protein A1C_06245 [Rickettsia akari str. Hartford]
 gi|229890630|sp|A8GQ03|MIAB_RICAH RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|157800224|gb|ABV75478.1| hypothetical protein A1C_06245 [Rickettsia akari str. Hartford]
          Length = 445

 Score =  492 bits (1267), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 235/447 (52%), Positives = 332/447 (74%), Gaps = 7/447 (1%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +  ++K+YGCQMNVYDS++M+D+ +  GYE   ++++AD+I+LNTCHIREKAAEK YS L
Sbjct: 3   KNLYIKTYGCQMNVYDSVKMQDLLYPFGYEPTENIEEADVIILNTCHIREKAAEKTYSEL 62

Query: 85  GRIRNLKNSRIKEG-GDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER- 142
           GRI+ L+++R K+G    ++VVAGCVAQAEGEEI  R+P V++VVGPQ+YY LPEL+ + 
Sbjct: 63  GRIKKLQDTRKKQGLNSAIIVVAGCVAQAEGEEIFTRTPYVDIVVGPQSYYNLPELISKI 122

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            R  K ++D D+  E KF+ L   +  Y   +G ++F+++QEGCDKFCTFCVVPYTRG E
Sbjct: 123 VRHAKHLIDLDFVEEAKFDNLP--EQLY--PQGASSFISVQEGCDKFCTFCVVPYTRGAE 178

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR++ QV  EA +++  G  EI LLGQNVNA+  KG   +  + +DLL  L++I  L R
Sbjct: 179 FSRNVEQVYREALQVVSGGAKEIMLLGQNVNAYNWKGSADKIFSLADLLKHLAQIPNLER 238

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LRY TSHP DM+D LI+ HG    LMP+LHLPVQSGS++ILK+MNR+H    Y  II+R+
Sbjct: 239 LRYMTSHPIDMTDDLIQLHGTEPKLMPFLHLPVQSGSNKILKAMNRKHDREYYFDIINRL 298

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R  RPDI +SSDFIVGFPGETD+DF  T+DLV ++ Y Q +SFKYSPR GTPG+   +Q+
Sbjct: 299 REARPDIVLSSDFIVGFPGETDEDFEDTLDLVRRVKYGQCYSFKYSPRPGTPGATRTDQI 358

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
            E++K+ERL  LQK+L +QQ++ N++CVG  I+VL ++ GK   +++G++ ++QSV + +
Sbjct: 359 PEHIKSERLTILQKELMDQQLACNESCVGSTIKVLFDRSGKFDDQIIGKTIYMQSVYIQN 418

Query: 443 KNHN-IGDIIKVRITDVKISTLYGELV 468
            N + +G II V+IT   +++L GE++
Sbjct: 419 PNKSLLGKIIDVKITKASLNSLTGEIL 445


>gi|15604640|ref|NP_221158.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Rickettsia
           prowazekii str. Madrid E]
 gi|6226397|sp|Q9ZCE8|MIAB_RICPR RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|3861335|emb|CAA15234.1| unknown [Rickettsia prowazekii]
 gi|292572459|gb|ADE30374.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Rickettsia prowazekii
           Rp22]
          Length = 445

 Score =  492 bits (1267), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 235/447 (52%), Positives = 330/447 (73%), Gaps = 7/447 (1%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ ++K+YGCQMNVYDS++++D+ +  GYE    + +AD+I+LNTCHIREKAAEK YS L
Sbjct: 3   KKLYIKTYGCQMNVYDSVKIQDLLYPFGYESTEDIKEADIIILNTCHIREKAAEKTYSEL 62

Query: 85  GRIRNLKNSRIKEG-GDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           GRI+ L+N+R +EG    ++VVAGCVAQAEGEEI  R+P V++VVGPQ+YY LPEL+ + 
Sbjct: 63  GRIKKLQNTRKQEGLNPAIIVVAGCVAQAEGEEIFSRTPYVDIVVGPQSYYNLPELISKV 122

Query: 144 -RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            R  K+++D D+  E KF+ L   +  Y   +G ++F+++QEGCDKFCTFCVVPYTRG E
Sbjct: 123 VRHEKQLIDLDFVEEAKFDNLP--EQLY--PQGASSFISVQEGCDKFCTFCVVPYTRGAE 178

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SRS+ QV  E+ K + N   EI LLGQNVNA+ GKG   +  T +DLL  L++I  L R
Sbjct: 179 FSRSVEQVYRESLKAVSNDAKEIILLGQNVNAYHGKGPKDKIFTLADLLKCLAQIPNLAR 238

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LRY TSHP DM+D LIK HG    LMP+LHLPVQSGS++ILK+MNR+H    Y  II+R+
Sbjct: 239 LRYMTSHPIDMTDDLIKLHGTEPKLMPFLHLPVQSGSNKILKAMNRKHDRDYYFNIINRL 298

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R  R DI +SSDFIVGFPGET+ DF  T+DLV ++ Y Q +SFKYSPR GTPG+   +Q+
Sbjct: 299 REARSDIVLSSDFIVGFPGETEQDFEDTLDLVHRVKYGQCYSFKYSPRPGTPGAIRTDQI 358

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
            E++K++RL  LQ++L  QQ++FN +CVG  + VL ++ GK + +++G++P++QSV +++
Sbjct: 359 PEHIKSKRLTILQQELATQQLAFNQSCVGSTMRVLFDRDGKFEDQIIGKTPYMQSVYIHN 418

Query: 443 KNHN-IGDIIKVRITDVKISTLYGELV 468
            N + +G I+ V IT   +++L GE++
Sbjct: 419 PNKSLLGKIVDVIITKAALNSLTGEIL 445


>gi|296116295|ref|ZP_06834911.1| (dimethylallyl)adenosine tRNA methylthiotransferase
           [Gluconacetobacter hansenii ATCC 23769]
 gi|295977114|gb|EFG83876.1| (dimethylallyl)adenosine tRNA methylthiotransferase
           [Gluconacetobacter hansenii ATCC 23769]
          Length = 498

 Score =  492 bits (1266), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 244/443 (55%), Positives = 317/443 (71%), Gaps = 4/443 (0%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
             V ++GCQMNVYDS RM D+    GYE V++ D AD+I+LNTCHIR++AAEKV+S LGR
Sbjct: 53  LHVITWGCQMNVYDSERMTDVLRPLGYEAVDAPDRADMIILNTCHIRDRAAEKVFSELGR 112

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           +R +K +R + G   ++ VAGCVAQAEG EIL R+P V++V+GPQTY+RLPE++ RA   
Sbjct: 113 LRLVKEARAQAGQQTVLAVAGCVAQAEGREILARAPYVDIVLGPQTYHRLPEMVARAARA 172

Query: 147 KR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
              V++TD+ VE KF+ L           G  AFLTIQEGCDKFC+FCVVPYTRG E SR
Sbjct: 173 AGAVIETDFPVEQKFDFLPPE---REVPAGGAAFLTIQEGCDKFCSFCVVPYTRGAEASR 229

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            ++ ++DEAR+L+ +GV EITLLGQNVNA+ G G DG     + L   L+   G+ R+RY
Sbjct: 230 PVAAIMDEARRLVAHGVREITLLGQNVNAYHGDGPDGTTWGLARLTAELAGQVGVERIRY 289

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
           TTSHPRDM D L+ AH +   LMP+LHLPVQSGSDR+L +MNR HTA EYR ++ R+R+ 
Sbjct: 290 TTSHPRDMDDGLVAAHREQPALMPFLHLPVQSGSDRVLAAMNRGHTAQEYRDLVARLRTA 349

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
           RPD+A+SSDFIVG PGETD+DF  TM L+  IG+AQA+SFKYSPR GTP SN   QV E+
Sbjct: 350 RPDLALSSDFIVGHPGETDEDFEQTMQLIRDIGFAQAYSFKYSPRPGTPASNAGAQVPED 409

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445
           VK  RL  LQ  LREQQ +FN A VGQ ++VL    G++ G++ G+SP+LQ+V +   + 
Sbjct: 410 VKDARLQRLQALLREQQDAFNAASVGQRVDVLFTGRGRKPGQISGKSPYLQAVHVEGPDS 469

Query: 446 NIGDIIKVRITDVKISTLYGELV 468
            IG + +V I  +  ++L G L 
Sbjct: 470 LIGQVAEVDIVKLHTNSLGGVLT 492


>gi|89069602|ref|ZP_01156941.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Oceanicola granulosus
           HTCC2516]
 gi|89044800|gb|EAR50900.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Oceanicola granulosus
           HTCC2516]
          Length = 437

 Score =  491 bits (1263), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 248/448 (55%), Positives = 315/448 (70%), Gaps = 17/448 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
            P++ F+K+YGCQMNVYDS RM +    +GY      ++AD+I+LNTCHIREKAAEKVYS
Sbjct: 5   APKKLFIKTYGCQMNVYDSERMAEALGGRGYVETQVAEEADMILLNTCHIREKAAEKVYS 64

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            LGR++ LK     E  DL + VAGCVAQAEGEEI+RR P+V++VVGPQ+Y+RLP +   
Sbjct: 65  ELGRLKPLK----AEKPDLKIGVAGCVAQAEGEEIMRRQPLVDLVVGPQSYHRLPAMDAA 120

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
              G + +DTD+  EDKF  L+        +RG TAFLT+QEGCDKFC FCVVPYTRG E
Sbjct: 121 LATGGKALDTDFPAEDKFSGLAARP---RAQRGPTAFLTVQEGCDKFCAFCVVPYTRGAE 177

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK--GLDGEKCTFSDLLYSLSEIKGL 260
           +SR   +VVDEAR L++ GV EITLLGQNVNA+ G   GL G       L+ +L+ I GL
Sbjct: 178 VSRPAERVVDEARALVEAGVREITLLGQNVNAYHGHEGGLAG-------LVRTLAAIDGL 230

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+RYTTSHP DM D LI AHGD   LMPYLHLPVQSGSDRILK+MNR+HTA  Y ++I+
Sbjct: 231 ERIRYTTSHPNDMDDALIAAHGDCPELMPYLHLPVQSGSDRILKAMNRKHTAEAYLRLIE 290

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           R+R  RPD+A+S DFIVGFPGET+ DF  TM LV+ +GYAQA+SFKYS R GTP +    
Sbjct: 291 RLRDARPDLALSGDFIVGFPGETEADFADTMGLVEAVGYAQAYSFKYSTRPGTPAAEK-P 349

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440
           Q+  +V ++RL  LQ  L+ QQ +  +A VG+ + VL EK G+  G++VGRS  L +V +
Sbjct: 350 QLPGDVMSDRLARLQALLKAQQTAAQEAMVGREVGVLFEKPGRLPGQMVGRSDHLCAVHV 409

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
            +     G+I +VRIT    ++L G L 
Sbjct: 410 EAPEALKGEIARVRITASAPNSLAGTLA 437


>gi|126464040|ref|YP_001045153.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Rhodobacter
           sphaeroides ATCC 17029]
 gi|229890628|sp|A3PPW5|MIAB_RHOS1 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|126105851|gb|ABN78381.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Rhodobacter sphaeroides
           ATCC 17029]
          Length = 436

 Score =  491 bits (1263), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 250/446 (56%), Positives = 320/446 (71%), Gaps = 22/446 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F+K+YGCQMNVYDS RM +   ++GY      ++AD+++LNTCHIREKAAEKVYS L
Sbjct: 5   RKLFIKTYGCQMNVYDSERMAEALGAKGYVLTEVAEEADMVLLNTCHIREKAAEKVYSDL 64

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR+R LK ++     DL + VAGCVAQAEGEEIL+R P+V++VVGPQ+Y+RLP++L+R  
Sbjct: 65  GRLRPLKTAKP----DLKIGVAGCVAQAEGEEILKRMPLVDLVVGPQSYHRLPDMLDRTE 120

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRK--RGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            G RVVDTD+  EDKF+ L        RK  RG  AFLT+QEGCDKFC FCVVPYTRG E
Sbjct: 121 GGARVVDTDFPEEDKFDHLP------ERKATRGPAAFLTVQEGCDKFCAFCVVPYTRGAE 174

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR--GKGLDGEKCTFSDLLYSLSEIKGL 260
           +SR  ++++ EAR L++ GV EITLLGQNVNAW   G+GL G       L+  L+ I GL
Sbjct: 175 VSRPFARLMAEARGLVERGVREITLLGQNVNAWSSDGRGLGG-------LIRELARIDGL 227

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            RLRYTTSHP DM+D LI+AHG    LMPYLHLPVQSGSDRILK+MNR+HTA  Y ++I+
Sbjct: 228 ERLRYTTSHPNDMADDLIEAHGAEPKLMPYLHLPVQSGSDRILKAMNRKHTAEHYLRLIE 287

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           RIR+ RPDI ++SDFIVGFPGET+ DF AT+DL+  +G+  AFSFKYS R GTP +   E
Sbjct: 288 RIRAARPDILLTSDFIVGFPGETEADFEATLDLIRAVGFGSAFSFKYSARPGTPAAEKPE 347

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440
              E   A RL  LQ  + EQQ +   A VG+ + VL EK G+  G++VG+S  L +V +
Sbjct: 348 LPGEVCDA-RLQRLQALVTEQQRAAQMAMVGREVGVLYEKAGRLPGQMVGKSDHLHAVHV 406

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGE 466
             K   +GD+++VRIT    ++L GE
Sbjct: 407 EDKAGRVGDLVRVRITASAPNSLAGE 432


>gi|221369608|ref|YP_002520704.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Rhodobacter
           sphaeroides KD131]
 gi|221162660|gb|ACM03631.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Rhodobacter sphaeroides
           KD131]
          Length = 436

 Score =  490 bits (1262), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 250/446 (56%), Positives = 320/446 (71%), Gaps = 22/446 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F+K+YGCQMNVYDS RM +   ++GY      ++AD+++LNTCHIREKAAEKVYS L
Sbjct: 5   RKLFIKTYGCQMNVYDSERMAEALGAKGYVLTEVAEEADMVLLNTCHIREKAAEKVYSDL 64

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR+R LK ++     DL + VAGCVAQAEGEEIL+R P+V++VVGPQ+Y+RLP++L+R  
Sbjct: 65  GRLRPLKTAKP----DLKIGVAGCVAQAEGEEILKRMPLVDLVVGPQSYHRLPDMLDRTE 120

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRK--RGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            G RVVDTD+  EDKF+ L        RK  RG  AFLT+QEGCDKFC FCVVPYTRG E
Sbjct: 121 GGARVVDTDFPEEDKFDHLP------ERKATRGPAAFLTVQEGCDKFCAFCVVPYTRGAE 174

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR--GKGLDGEKCTFSDLLYSLSEIKGL 260
           +SR  ++++ EAR L++ GV EITLLGQNVNAW   G+GL G       L+  L+ I GL
Sbjct: 175 VSRPFARLMAEARGLVERGVREITLLGQNVNAWSSDGRGLGG-------LIRELARIDGL 227

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            RLRYTTSHP DM+D LI+AHG    LMPYLHLPVQSGSDRILK+MNR+HTA  Y ++I+
Sbjct: 228 ERLRYTTSHPNDMADDLIEAHGAEPKLMPYLHLPVQSGSDRILKAMNRKHTAEHYLRLIE 287

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           RIR+ RPDI ++SDFIVGFPGET+ DF AT+DL+  +G+  AFSFKYS R GTP +   E
Sbjct: 288 RIRAARPDILLTSDFIVGFPGETEADFEATLDLIRAVGFGSAFSFKYSARPGTPAAEKPE 347

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440
              E   A RL  LQ  + EQQ +   A VG+ + VL EK G+  G++VG+S  L +V +
Sbjct: 348 LPAEVCDA-RLQRLQALVTEQQRAAQVAMVGREVGVLYEKAGRLPGQMVGKSDHLHAVHV 406

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGE 466
             K   +GD+++VRIT    ++L GE
Sbjct: 407 EDKAGRVGDLVRVRITASAPNSLAGE 432


>gi|114770160|ref|ZP_01447698.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [alpha proteobacterium
           HTCC2255]
 gi|114548997|gb|EAU51880.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [alpha proteobacterium
           HTCC2255]
          Length = 442

 Score =  490 bits (1262), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 237/444 (53%), Positives = 315/444 (70%), Gaps = 8/444 (1%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +  ++K++GCQMNVYDS RM     + GY  V+S ++AD+I+LNTCHIREKAAEK+YS L
Sbjct: 5   KNLYIKTFGCQMNVYDSERMATSLGADGYNEVSSPEEADMILLNTCHIREKAAEKIYSDL 64

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR ++LK     +  DL + V GCVAQAEGEEI++R P+V++VVGPQ Y+RLP + +   
Sbjct: 65  GRFKSLK----AKNPDLKIGVTGCVAQAEGEEIIKRQPLVDIVVGPQAYHRLPAMAKSIE 120

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            GK+VVDTD+  EDKFE L         KR  +AFLT+QEGCDKFC FCVVP+TRG E+S
Sbjct: 121 NGKKVVDTDFPEEDKFEHLP---AAPKTKRAPSAFLTVQEGCDKFCAFCVVPFTRGAEVS 177

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R + Q+++EAR L++ GV +ITLLGQNVNA+ G    G+      L+  LS+I+ L R+R
Sbjct: 178 RPVLQIINEARDLVERGVRDITLLGQNVNAYHGAMKSGD-ANLPQLIKELSKIEELKRIR 236

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +TTSHP DM+  LI AHG+++ LMPYLHLPVQSGSD+ILK MNR+HTA  Y ++I+ +R 
Sbjct: 237 FTTSHPNDMTQELIDAHGEMEKLMPYLHLPVQSGSDKILKGMNRKHTAKSYLEVIENLRV 296

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
            RPDIA+S DFIVGFPGETD+DF  T++LV ++ YAQA+SFKYS R GTP +    QV E
Sbjct: 297 ARPDIALSGDFIVGFPGETDEDFEQTLELVREVKYAQAYSFKYSTRPGTPAAENKNQVPE 356

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
            +K+ERL  LQ  L + Q  F    VG+++ VL+E+ G+  G+LVGRS +L  V  +   
Sbjct: 357 EIKSERLSRLQALLSQHQKEFMGTMVGKVLPVLLERPGRLDGQLVGRSEYLHGVHASIDQ 416

Query: 445 HNIGDIIKVRITDVKISTLYGELV 468
             IGDI+ +RI     ++L  E V
Sbjct: 417 AQIGDIVNLRILGADTNSLRAEFV 440


>gi|126730915|ref|ZP_01746724.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Sagittula stellata E-37]
 gi|126708631|gb|EBA07688.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Sagittula stellata E-37]
          Length = 435

 Score =  490 bits (1261), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 247/447 (55%), Positives = 317/447 (70%), Gaps = 17/447 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F+K+YGCQMNVYDS RM +    QGY    + DDAD+I+LNTCHIREKAAEKVYS L
Sbjct: 3   RKLFIKTYGCQMNVYDSERMAEAMGGQGYVVTETPDDADMILLNTCHIREKAAEKVYSEL 62

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR + LK ++     DL + VAGCVAQAEGEEI+RR P+V++VVGPQ+Y+RLPEL  +AR
Sbjct: 63  GRYKGLKAAKP----DLKIGVAGCVAQAEGEEIMRRQPMVDLVVGPQSYHRLPELEAKAR 118

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G + +DTD+  EDKFE L+        KRG TAFLT+QEGCDKFC FCVVPYTRG E+S
Sbjct: 119 TGAKALDTDFPEEDKFEHLTARP---KAKRGPTAFLTVQEGCDKFCAFCVVPYTRGAELS 175

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG--KGLDGEKCTFSDLLYSLSEIKGLVR 262
           R   +V+ EAR L++ GV EITLLGQNVNA+ G  +GL G       L+  L  I GL R
Sbjct: 176 RPAERVMREARDLVERGVREITLLGQNVNAYHGHERGLAG-------LIRELETIDGLAR 228

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP DM D LI AHG+ + LMPYLHLPVQ+GSDRILK MNR+HTA +Y ++I+R+
Sbjct: 229 IRFTTSHPNDMDDALIAAHGECEKLMPYLHLPVQAGSDRILKRMNRQHTAEQYLRLIERL 288

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+ RPD+ +S DFIVGFP ET+ DFR T+ L++ + Y  AFSFKYS R GTP +    QV
Sbjct: 289 RAARPDLHLSGDFIVGFPEETEADFRDTLALIEAVEYGSAFSFKYSERPGTPAAERA-QV 347

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
            E+ K +RL  LQ  L +QQ +  DA VG+ + VL EK G+  G++VG+S +L +V + +
Sbjct: 348 PEDEKDDRLQRLQALLTKQQRALQDAMVGREVRVLFEKPGRLPGQMVGKSEYLHAVHVEA 407

Query: 443 KNHNIGDIIKVRITDVKISTLYGELVV 469
           +    GDI  VRI     ++L G L+ 
Sbjct: 408 QGIGAGDIAPVRIESSGPNSLGGVLMA 434


>gi|23015405|ref|ZP_00055182.1| COG0621: 2-methylthioadenine synthetase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 425

 Score =  489 bits (1260), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 234/429 (54%), Positives = 312/429 (72%), Gaps = 10/429 (2%)

Query: 36  MNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRI 95
           MNVYDS RM D+    GY   +  ++AD+++LNTCHIREKAAEKV+S LGR+R +K +R 
Sbjct: 1   MNVYDSARMADVLAPLGYGPADHAEEADMVILNTCHIREKAAEKVFSELGRLRKIKTARA 60

Query: 96  KEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-ERARFGKRVVDTDY 154
           + G  +++ VAGCVAQAEGEEILRR+P V++V+GPQTY+RLPE++ + AR G  V+DT++
Sbjct: 61  EAGQRMILAVAGCVAQAEGEEILRRAPFVDIVLGPQTYHRLPEMVAQAARAGGAVLDTEF 120

Query: 155 SVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEA 214
             E KF+ L          +G +AFL++QEGCDKFCTFCVVPYTRG E SR  + ++ EA
Sbjct: 121 PAEPKFDFLP-----EPLAQGSSAFLSVQEGCDKFCTFCVVPYTRGAEYSRPATAILAEA 175

Query: 215 RKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMS 274
            KL   GV EITLLGQNVN W G     E      L+ +L+E+ G+ RLRYTTSHPRDM 
Sbjct: 176 AKLAQGGVREITLLGQNVNGWHGD----EGWGLGRLIRALAEVPGVERLRYTTSHPRDMD 231

Query: 275 DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSD 334
           D LI+AH +L  LMP+LHLPVQSGSDRIL +MNR H    Y +++DR++SV PD+A+SSD
Sbjct: 232 DELIRAHAELPQLMPFLHLPVQSGSDRILAAMNRGHDRDTYLRLVDRLKSVCPDLALSSD 291

Query: 335 FIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCL 394
           FIVGFPGE+D DF A+MDL+ ++G+ Q +SFKYSPR GTP + M +QV E VK ERL  +
Sbjct: 292 FIVGFPGESDADFEASMDLIRQVGFVQTYSFKYSPRPGTPAAAMDQQVPEPVKDERLAQV 351

Query: 395 QKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVR 454
           Q  L EQ   FN +CVG+ + VL+++ G+  G+L+GRSP++Q V + +  H IG ++ +R
Sbjct: 352 QALLMEQTTRFNHSCVGREMRVLLDRPGRHAGQLLGRSPYMQPVHVKAAAHLIGTVVNLR 411

Query: 455 ITDVKISTL 463
           IT V  ++L
Sbjct: 412 ITKVHPNSL 420


>gi|56550973|ref|YP_161812.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Zymomonas
           mobilis subsp. mobilis ZM4]
 gi|260753353|ref|YP_003226246.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Zymomonas
           mobilis subsp. mobilis NCIMB 11163]
 gi|81355650|sp|Q5NRF3|MIAB_ZYMMO RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|56542547|gb|AAV88701.1| RNA modification enzyme, MiaB family [Zymomonas mobilis subsp.
           mobilis ZM4]
 gi|258552716|gb|ACV75662.1| RNA modification enzyme, MiaB family [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
          Length = 445

 Score =  489 bits (1260), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 236/444 (53%), Positives = 322/444 (72%), Gaps = 13/444 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + F++KS+GCQMN YD  RM ++  SQG +       ADL+VLNTCHIREKAAEKVYS +
Sbjct: 7   KHFYIKSFGCQMNSYDGERMSELLESQGMKAAEEAATADLVVLNTCHIREKAAEKVYSEI 66

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR+R        +G   ++ +AGCVAQAEG E+L R+ +V++VVGPQ Y+ LPEL+E+A 
Sbjct: 67  GRLRR------PDGSSPMIALAGCVAQAEGAEVLARTKMVDIVVGPQAYHHLPELIEKAA 120

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            GK VVD D  +E KF+ L        R+ G +AFLT+QEGCDKFCT+CVVPYTRG E+S
Sbjct: 121 SGK-VVDIDMPLESKFDALP-----ERRQVGASAFLTVQEGCDKFCTYCVVPYTRGAEVS 174

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R  S++V EA  L+D G  EITLLGQNVNAW G+   G       L+ +L++I GL R+R
Sbjct: 175 RPWSRIVKEAHALVDKGAREITLLGQNVNAWTGEDEAGRSQGLDGLIRALAKIDGLERIR 234

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           YTTSHP DM++ LI+AHG++D LMP+LHLPVQSGS+RILK+MNR HTA  Y  +++R++ 
Sbjct: 235 YTTSHPNDMTEGLIEAHGEIDKLMPFLHLPVQSGSNRILKAMNRAHTAESYLTLMNRLKE 294

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           VRPDIA+S DFIVGFPGE+++DF+AT+DL+ ++GY+ AFSF YSPR GTP ++M  Q+D 
Sbjct: 295 VRPDIALSGDFIVGFPGESEEDFQATLDLISEVGYSLAFSFAYSPRPGTPAADMDNQIDP 354

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
            +  ERL  LQ  L +QQ  FN   +G+   VLIE+ GK+  +++G+SPWLQSV++ +  
Sbjct: 355 EISRERLQRLQALLNQQQFDFNQQTIGRKATVLIERKGKKADQMIGKSPWLQSVIIEAPV 414

Query: 445 HNIGDIIKVRITDVKISTLYGELV 468
             IGD+++V +TD   +++ G+ +
Sbjct: 415 -AIGDLVEVTLTDAGPNSVKGQFL 437


>gi|85374526|ref|YP_458588.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Erythrobacter
           litoralis HTCC2594]
 gi|123409590|sp|Q2N950|MIAB_ERYLH RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|84787609|gb|ABC63791.1| 2-methylthioadenine synthetase [Erythrobacter litoralis HTCC2594]
          Length = 446

 Score =  489 bits (1259), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 235/445 (52%), Positives = 310/445 (69%), Gaps = 10/445 (2%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+ + VKS+GCQMNVYD  RM +M   +G E     +DADL+VLNTCHIREKA +KVYS 
Sbjct: 7   PKTYRVKSFGCQMNVYDGERMAEMLDEKGIEPAPEGEDADLVVLNTCHIREKAVDKVYSD 66

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +GR+   K          ++ VAGCVAQAEGEEI+ R+P V++VVGPQ Y+RLP +++ A
Sbjct: 67  IGRLTKGKTQTKAP----MIAVAGCVAQAEGEEIMARAPAVSMVVGPQAYHRLPGMIDAA 122

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             GKR  DTD   + KF  L        RK   +AFLTIQEGCDKFCT+CVVPYTRG EI
Sbjct: 123 VAGKRSTDTDMPADAKFAALP-----KRRKSAPSAFLTIQEGCDKFCTYCVVPYTRGAEI 177

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR  S ++DEA+KL++ G  EITLLGQNV+AW G+   G     + L+  L++   L R+
Sbjct: 178 SRPFSALIDEAKKLVEAGAKEITLLGQNVSAWTGEDAKGRALGMAGLIRELAKDPDLKRV 237

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           RYTTSHP DM D LI  HG+++ LMPYLHLPVQSG+DR+LK+MNR HTA  Y ++++R R
Sbjct: 238 RYTTSHPADMDDELIATHGEVEKLMPYLHLPVQSGNDRVLKAMNRSHTAESYLRLLERFR 297

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           + RPD+A+S DFIVGFPGET+ +F  T+ +VD++ YAQA+SFKYSPR GTP + M  QV 
Sbjct: 298 AARPDLALSGDFIVGFPGETEAEFEDTLKIVDEVRYAQAYSFKYSPRPGTPAATMERQVP 357

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
           + V  ERL  LQ  L   Q +FN   VG+  EVL+E+ GK  G+ +G+SPWLQSV  +  
Sbjct: 358 KEVMDERLQRLQAALNRDQAAFNAGSVGRTCEVLVERTGKHPGQWLGKSPWLQSVWFDG- 416

Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468
           +  IGD+++V + +   ++L G+L+
Sbjct: 417 DVAIGDLVQVELVEAGPNSLAGQLL 441


>gi|84515221|ref|ZP_01002583.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Loktanella vestfoldensis
           SKA53]
 gi|84510504|gb|EAQ06959.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Loktanella vestfoldensis
           SKA53]
          Length = 436

 Score =  489 bits (1258), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 241/448 (53%), Positives = 321/448 (71%), Gaps = 17/448 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
            P++ F+K+YGCQMNVYDS RM +    QGY + +  +DAD+I+LNTCHIREKAAEKVYS
Sbjct: 3   APKKLFIKTYGCQMNVYDSERMAEALGGQGYVQTDHAEDADMILLNTCHIREKAAEKVYS 62

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            LGR++ LK+++     DL + VAGCVAQAEG EI+RR P+V++VVGPQ+Y+RLP +   
Sbjct: 63  ELGRMKVLKDAKP----DLKIGVAGCVAQAEGAEIMRRQPMVDLVVGPQSYHRLPAMDAA 118

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            + G + +DTD+  +DKF+ L         KRG TAFLT+QEGCDKFC FCVVPYTRG E
Sbjct: 119 VQGGAKALDTDFPEDDKFKTLKTRS---KAKRGPTAFLTVQEGCDKFCAFCVVPYTRGAE 175

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG--KGLDGEKCTFSDLLYSLSEIKGL 260
           +SR   +++ EAR+L+D GV E+TLLGQNVNA+ G  +GL G       L+++L+EI GL
Sbjct: 176 VSRPADRILREARELVDAGVRELTLLGQNVNAYHGHERGLAG-------LIWALTEIDGL 228

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+TTSHP DM   LI AHG  + LMPYLHLPVQSGSDRILK+MNR+HTA  Y ++ID
Sbjct: 229 ERIRFTTSHPNDMDQALIDAHGTCEKLMPYLHLPVQSGSDRILKAMNRKHTAESYLRLID 288

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           RIR+ RPDI +S DFIVGFPGETD DF  T+ LV  + Y QA+SFKYS R GTP +    
Sbjct: 289 RIRAARPDILLSGDFIVGFPGETDQDFEDTLQLVRDVHYGQAYSFKYSTRPGTPAAEK-P 347

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440
           Q+ ++V  ERL  LQ  LR+QQ     + +G+ ++VL EK G+E G+++G+S +L +V  
Sbjct: 348 QLPDDVMNERLQRLQALLRDQQQQTQASMIGREVKVLFEKAGREAGQMIGKSEYLHAVYA 407

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
           ++    +G + +VRI     ++L GEL+
Sbjct: 408 DAPATVLGQVRRVRIVQDSANSLKGELI 435


>gi|83949580|ref|ZP_00958313.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Roseovarius nubinhibens
           ISM]
 gi|83837479|gb|EAP76775.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Roseovarius nubinhibens
           ISM]
          Length = 440

 Score =  488 bits (1257), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 241/444 (54%), Positives = 318/444 (71%), Gaps = 8/444 (1%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ ++K+YGCQMNVYDS RM +    QGY    S ++AD+I+LNTCHIREKAAEKVYS L
Sbjct: 5   KKLYIKTYGCQMNVYDSERMAEALGGQGYVETQSPEEADMILLNTCHIREKAAEKVYSEL 64

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR+R LK ++     DL + VAGCVAQAEGEEI+RR P+V++VVGP +Y+RLPE+ E+ R
Sbjct: 65  GRMRGLKEAKP----DLKIGVAGCVAQAEGEEIMRRQPLVDLVVGPSSYHRLPEMEEKTR 120

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G++ + TD+  EDKF RL    G    +RG +AFL++QEGCDKFC FCVVPYTRG E S
Sbjct: 121 QGQKALVTDFPEEDKFARLK---GRPKAQRGPSAFLSVQEGCDKFCAFCVVPYTRGAEYS 177

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R +  V+DEAR LI+ GV EITLLGQNVNA+ G+G DG +   + L++ L ++ GL R+R
Sbjct: 178 RPVKAVLDEARDLIERGVREITLLGQNVNAYHGEGPDGAEWGLARLIWELDKLDGLQRIR 237

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +TTSHP DM   LI+A G    LMPYLHLPVQSGSDRILK MNR HTA  Y ++++ IR+
Sbjct: 238 FTTSHPNDMDAALIEALGSCAKLMPYLHLPVQSGSDRILKRMNRSHTAESYLRLMEEIRA 297

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
            RPDI +S DFIVGFP ET++DF+AT+DLV+ + Y  A+SFKYS R GTP +    QV+E
Sbjct: 298 ARPDIVLSGDFIVGFPEETEEDFQATLDLVEAVKYGYAYSFKYSTRPGTPAAERA-QVEE 356

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
            VK ERL  LQ  +   Q    D  VG+ + VL EK G+ +G++VG+S +L +V +    
Sbjct: 357 AVKTERLGRLQDLITRHQREIQDGMVGREMSVLFEKPGRFEGQMVGKSDYLHAVHVKDAL 416

Query: 445 HNIGDIIKVRITDVKISTLYGELV 468
             +GD+ +VRI +   ++L GEL+
Sbjct: 417 VAVGDLRRVRIVESMTNSLAGELI 440


>gi|254485983|ref|ZP_05099188.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Roseobacter sp. GAI101]
 gi|214042852|gb|EEB83490.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Roseobacter sp. GAI101]
          Length = 462

 Score =  486 bits (1252), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 240/441 (54%), Positives = 311/441 (70%), Gaps = 9/441 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
            P++ F+K+YGCQMNVYDS RM +      Y    +  DAD+I+LNTCHIREKAAEKVYS
Sbjct: 26  APKKLFIKTYGCQMNVYDSERMAESL-GDAYVETKTAADADMILLNTCHIREKAAEKVYS 84

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            LGR++ LK        DL + VAGCVAQAEG EI+RR P V++VVGPQ+Y+RLP +  R
Sbjct: 85  ELGRLKPLKAL----NPDLKIGVAGCVAQAEGAEIMRRQPAVDLVVGPQSYHRLPAMEAR 140

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            R GK  +DTD+  EDKFE++    G     R  +AFLT+QEGCDKFC FCVVPYTRG E
Sbjct: 141 VREGKTALDTDFPEEDKFEKMK---GRGKAARAPSAFLTVQEGCDKFCAFCVVPYTRGAE 197

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR  ++V+ EA +L++ GV E+TLLGQNVNA+ G G +G   T + L+  +++I GL R
Sbjct: 198 VSRPATRVLAEACELVERGVREVTLLGQNVNAYHGVGPEGADYTLARLIREIAKIDGLER 257

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +RYTTSHP DM D LI AHG++D LMPYLHLPVQSGSDRILK MNR HTA  Y ++I+RI
Sbjct: 258 IRYTTSHPNDMDDALIAAHGEVDKLMPYLHLPVQSGSDRILKRMNRSHTAESYLRLIERI 317

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R  RPDI +S DFIVGFP ETD DF ATMDLV ++ Y  A+SFKYS R GTP +     V
Sbjct: 318 RDARPDIVMSGDFIVGFPEETDADFEATMDLVREVKYGYAYSFKYSTRPGTPAAER-ALV 376

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
           D  V  +RL  LQ  +   Q     + VG+ + VL+EK G++ G++VG+S +L SV +++
Sbjct: 377 DAAVADDRLQRLQALITGHQREIQTSMVGRDLSVLVEKSGRDAGQMVGKSEYLHSVHIDN 436

Query: 443 KNHNIGDIIKVRITDVKISTL 463
              ++GD+++VRI D K ++L
Sbjct: 437 ATASVGDVVRVRIVDAKTNSL 457


>gi|254452609|ref|ZP_05066046.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Octadecabacter
           antarcticus 238]
 gi|198267015|gb|EDY91285.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Octadecabacter
           antarcticus 238]
          Length = 443

 Score =  486 bits (1252), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 240/446 (53%), Positives = 320/446 (71%), Gaps = 17/446 (3%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P++ F+K+YGCQMNVYDS RM +   +QGY   +   DAD+I+LNTCHIREKAAEK+YS 
Sbjct: 12  PKKLFIKTYGCQMNVYDSERMAESLGTQGYVTTDVAADADMILLNTCHIREKAAEKMYSE 71

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR++ LK  +     DL + VAGCVAQAEG EI+RR P+V++VVGPQ+Y+RLP + +  
Sbjct: 72  LGRLKPLKADKP----DLKIGVAGCVAQAEGAEIIRRQPMVDLVVGPQSYHRLPAMEQAV 127

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             G++ +DTD+  +DKF+ L         KRG TAFLT+QEGCDKFC FCVVPYTRG E 
Sbjct: 128 ARGEKALDTDFPEDDKFDTLK---SRSKAKRGPTAFLTVQEGCDKFCAFCVVPYTRGAEF 184

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK--GLDGEKCTFSDLLYSLSEIKGLV 261
           SR   +++ EA +L++ GV EITLLGQNVNA+ G   GL G       L++ L ++ GL 
Sbjct: 185 SRPADRIIREAHELVEAGVREITLLGQNVNAYHGHAGGLAG-------LIWDLDKVDGLK 237

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHP DM D LI AHG  D LMPYLHLPVQSGSD++LK+MNR+HT  +Y  +I+R
Sbjct: 238 RIRFTTSHPNDMDDALIDAHGTCDKLMPYLHLPVQSGSDKVLKAMNRKHTRDQYFALIER 297

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           IR+ RPD+ +S DFIVGFPGET+ DF  TMDLV  +GY QA+SFKYS R GTP +    Q
Sbjct: 298 IRAARPDLLLSGDFIVGFPGETEADFEDTMDLVRTVGYGQAYSFKYSTRPGTPAAER-AQ 356

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           VDE+VK ERL  LQ  L +QQ +   + +G+ ++VL EK G+E G+++G+S +L +V  +
Sbjct: 357 VDEDVKLERLHRLQALLGDQQRAIQASMIGRTVKVLFEKKGRESGQMIGKSEYLHAVFAD 416

Query: 442 SKNHNIGDIIKVRITDVKISTLYGEL 467
           + +  IGD+ KV+I   + ++L GE+
Sbjct: 417 TTDVAIGDLRKVKIVKSESNSLGGEI 442


>gi|332561273|ref|ZP_08415591.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Rhodobacter
           sphaeroides WS8N]
 gi|332275071|gb|EGJ20387.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Rhodobacter
           sphaeroides WS8N]
          Length = 436

 Score =  486 bits (1252), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 248/446 (55%), Positives = 318/446 (71%), Gaps = 22/446 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F+K+YGCQMNVYDS RM +   ++GY      ++AD+++LNTCHIREKAAEKVYS L
Sbjct: 5   RKLFIKTYGCQMNVYDSERMAEALGARGYVLTEVAEEADMVLLNTCHIREKAAEKVYSDL 64

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR+R LK ++     DL + VAGCVAQAEGEEIL+R P+V++VVGPQ+Y+RLP++L+R  
Sbjct: 65  GRLRPLKTAKP----DLKIGVAGCVAQAEGEEILKRMPLVDLVVGPQSYHRLPDMLDRTE 120

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRK--RGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            G RVVDTD+  EDKF+ L        RK  RG  AFLT+QEGCDKFC FCVVPYTRG E
Sbjct: 121 GGARVVDTDFPEEDKFDHLP------ERKATRGPAAFLTVQEGCDKFCAFCVVPYTRGAE 174

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR--GKGLDGEKCTFSDLLYSLSEIKGL 260
           +SR  ++++ EAR L++ GV EITLLGQNVNAW   G+GL G       L+  L+ I GL
Sbjct: 175 VSRPFARLMAEARGLVERGVREITLLGQNVNAWSSDGRGLGG-------LIRELARIDGL 227

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            RLRYTTSHP DM+D LI+AHG    LMPYLHLPVQSGSDRILK+MNR+HTA  Y ++I+
Sbjct: 228 ERLRYTTSHPNDMADDLIEAHGAEPKLMPYLHLPVQSGSDRILKAMNRKHTAEHYLRLIE 287

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           RIR+ RPDI ++SDFIVGFPGET+ DF AT+DL+  +G+  AFSFKYS R GTP +   E
Sbjct: 288 RIRAARPDILLTSDFIVGFPGETEADFEATLDLIRAVGFGSAFSFKYSARPGTPAAEKPE 347

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440
              E   A RL  LQ  + EQQ +   A VG+ + VL EK G+  G++VG+S  L +V +
Sbjct: 348 LPTEVCDA-RLQRLQALVTEQQRAAQVAMVGREVGVLYEKAGRLPGQMVGKSDHLHAVHV 406

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGE 466
                 +GD+++VRIT    ++L  E
Sbjct: 407 EDPAGRVGDLVRVRITASAPNSLAAE 432


>gi|330994671|ref|ZP_08318594.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Gluconacetobacter sp. SXCC-1]
 gi|329758312|gb|EGG74833.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Gluconacetobacter sp. SXCC-1]
          Length = 468

 Score =  486 bits (1250), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 245/456 (53%), Positives = 313/456 (68%), Gaps = 4/456 (0%)

Query: 14  VSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIR 73
           V+Q   + +  +   V ++GCQMNVYDS RM D+    GY  V + DDAD+I+LNTCHIR
Sbjct: 10  VAQPHTRTVSTRGLHVITWGCQMNVYDSERMTDVLRPLGYRAVGTPDDADMIILNTCHIR 69

Query: 74  EKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTY 133
           ++AAEKV+S LGR+R +K +R + G   ++ VAGCVAQAEG EIL R+P V++V+GPQTY
Sbjct: 70  DRAAEKVFSELGRLRKVKEARAERGAGTVLAVAGCVAQAEGHEILARAPYVDIVLGPQTY 129

Query: 134 YRLPELLERARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTF 192
           +RLPE++ RA      V++TD+ +E KF+ L           G  AFLTIQEGCDKFC+F
Sbjct: 130 HRLPEMVARAARAAGAVIETDFPIEQKFDFLPADRAA---PAGGAAFLTIQEGCDKFCSF 186

Query: 193 CVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLY 252
           CVVPYTRG E SR    V+ EAR+L+  G  EITLLGQNVNA+ G+G DG     + L  
Sbjct: 187 CVVPYTRGAESSRPAVAVLAEARRLVAAGAREITLLGQNVNAYHGEGPDGATWGLARLAR 246

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
            L++  G+ R+RYTTSHPRDM D LI AH DL  LMP+LHLPVQSGSDR+L +MNR HTA
Sbjct: 247 VLADEVGVARIRYTTSHPRDMEDDLIAAHRDLPQLMPFLHLPVQSGSDRVLAAMNRGHTA 306

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
            EYR ++DR+R+ RPD+A+SSDFIVG PGETD DF  TM L+  IG+AQA+SFKYSPR G
Sbjct: 307 DEYRVLVDRLRTARPDLALSSDFIVGHPGETDGDFADTMRLIRDIGFAQAYSFKYSPRPG 366

Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS 432
           TP +   +QV E+ K  RL  LQ  LR QQ  FNDA +G+   VL    G++ G++ G+S
Sbjct: 367 TPAAGAGQQVAESTKDARLQELQALLRVQQDEFNDATIGRSTPVLFTGRGRKPGQISGKS 426

Query: 433 PWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           PWLQ+V +      IG I  V I     ++L G L 
Sbjct: 427 PWLQAVNVEGPESLIGRIASVDIRHRYTNSLGGVLT 462


>gi|149202109|ref|ZP_01879082.1| tRNA-i(6)A37 modification enzyme MiaB [Roseovarius sp. TM1035]
 gi|149144207|gb|EDM32238.1| tRNA-i(6)A37 modification enzyme MiaB [Roseovarius sp. TM1035]
          Length = 440

 Score =  485 bits (1249), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 245/444 (55%), Positives = 318/444 (71%), Gaps = 10/444 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ ++K+YGCQMNVYDS RM +     GY       +AD+I+LNTCHIREKAAEKVYS L
Sbjct: 5   KKLYIKTYGCQMNVYDSERMAEAMGGSGYVETQDPAEADMILLNTCHIREKAAEKVYSEL 64

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR++ LK  +     DL + V GCVAQAEGEEI+RR P+V++VVGPQ+Y+RLPE+  R R
Sbjct: 65  GRMKQLKLDKP----DLKIGVTGCVAQAEGEEIMRRQPLVDLVVGPQSYHRLPEMEARVR 120

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G++ +DT++ +EDKF+ L         +RG TAFLT+QEGCDKFC FCVVPYTRG E+S
Sbjct: 121 AGEKALDTEFPIEDKFDTLRHRP---KARRGPTAFLTVQEGCDKFCAFCVVPYTRGAEVS 177

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R  S+V++EAR L++ GV EITLLGQNVNA+ G G +G     + L+++LSEI GL R+R
Sbjct: 178 RPASRVLEEARDLVERGVREITLLGQNVNAYHGAG-EGGDWGLARLVWALSEIDGLERIR 236

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +TTSHP DM D LI AHG+   LMPYLHLPVQSGSDRILK MNR HTA  Y ++I+RIR+
Sbjct: 237 FTTSHPNDMDDDLIAAHGECAKLMPYLHLPVQSGSDRILKRMNRSHTAESYLRLIERIRA 296

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
            RPDI +S DFIVGFP ETD DF+ATM+L++ + Y  AFSFKYS R GTP +    QV E
Sbjct: 297 ARPDILLSGDFIVGFPEETDADFQATMELIEAVNYGSAFSFKYSTRPGTPAAER-PQVPE 355

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
            VK ERL  LQ+ +  QQ +  DA VG+ + VL EK G+  G++VG+S  L +V +   +
Sbjct: 356 EVKTERLYRLQELITRQQRAAQDAMVGRRVGVLFEKAGRMPGQMVGKSDHLHAVHVTG-D 414

Query: 445 HNIGDIIKVRITDVKISTLYGELV 468
             IGD+ +V I +   ++L G L+
Sbjct: 415 VAIGDLRQVEIIESGPNSLAGRLL 438


>gi|294085157|ref|YP_003551917.1| 2-methylthioadenine synthetase [Candidatus Puniceispirillum marinum
           IMCC1322]
 gi|292664732|gb|ADE39833.1| 2-methylthioadenine synthetase [Candidatus Puniceispirillum marinum
           IMCC1322]
          Length = 451

 Score =  485 bits (1248), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 237/447 (53%), Positives = 313/447 (70%), Gaps = 7/447 (1%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F+K+YGCQMNVYDS RM D+    GY  + + D AD+++LNTCHIREKA+EKV+S L
Sbjct: 3   KKLFIKTYGCQMNVYDSDRMTDVLAPLGYAPIETPDGADMVILNTCHIREKASEKVFSEL 62

Query: 85  GRIRNLK-NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER- 142
           GR+R +K  +R ++G  + + VAGCVAQAEG EI RR+P V++VVGPQTY+RLPEL+   
Sbjct: 63  GRLRMMKEKARDQQGRAVTIAVAGCVAQAEGAEITRRAPWVDIVVGPQTYHRLPELIAEI 122

Query: 143 -ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
                KR +DTD+  E KF+ L       +  RG  AFL++QEGCDKFC FCVVPYTRG 
Sbjct: 123 DPSVRKRAIDTDFPQEVKFDLLP----EEHAPRGPAAFLSVQEGCDKFCAFCVVPYTRGA 178

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR  + V+ EA +L+  G  EITLLGQNVNA+ G    G   +   L+++L+EI GL 
Sbjct: 179 EYSRPAADVLAEATRLVGRGTREITLLGQNVNAYHGDDGHGSVWSLGRLIHALAEIDGLE 238

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+RYTTSHP DM D LI AHG++  LMPYLHLP+QSGSDR+L +MNRRH+   Y ++ID+
Sbjct: 239 RIRYTTSHPLDMDDELIAAHGNVPQLMPYLHLPIQSGSDRVLDAMNRRHSKDVYFKVIDK 298

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R VRPDIA+S DFIVGFPGE+D DF  T+ L+DK+GYA A+SFKYSPR GTP S    Q
Sbjct: 299 LRHVRPDIAMSGDFIVGFPGESDQDFADTLALIDKVGYASAYSFKYSPRPGTPASVSDLQ 358

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           V E VKA+RL  LQ+ L  QQ +FN    G  +++L+E+ G   G++ GRSP++Q+V   
Sbjct: 359 VPEAVKADRLEALQQLLNAQQFAFNKKTEGMRLDILVERAGGRAGQMAGRSPFMQAVNFA 418

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                IG II   I + + +++  E+ 
Sbjct: 419 GSEDQIGQIIACDIIEGRQNSVTAEIT 445


>gi|260760773|ref|ZP_05873116.1| RNA modification protein [Brucella abortus bv. 2 str. 86/8/59]
 gi|260671205|gb|EEX58026.1| RNA modification protein [Brucella abortus bv. 2 str. 86/8/59]
          Length = 380

 Score =  484 bits (1247), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 227/377 (60%), Positives = 291/377 (77%)

Query: 90  LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149
           ++++R  +G +L + VAGCVAQAEG+EILRR+P V++V+GPQTY+RLP  L R R G++V
Sbjct: 1   MRDARAADGKELTIGVAGCVAQAEGQEILRRAPNVDLVIGPQTYHRLPNALARVRGGEKV 60

Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209
           V+TDY++EDKFE L        RKRGV+AFLT+QEGCDKFCTFCVVPYTRG E+SRS+ Q
Sbjct: 61  VETDYAIEDKFEHLPAPRREETRKRGVSAFLTVQEGCDKFCTFCVVPYTRGSEVSRSVKQ 120

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSH 269
           +V EA +L D+GV E+TLLGQNVNAW G+G DG +    +LL+ L+ I G+ RLRYTTSH
Sbjct: 121 IVAEAERLADSGVRELTLLGQNVNAWHGEGEDGREWGLGELLFRLARIPGIARLRYTTSH 180

Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329
           PRDM D LI AH DL  LMPYLHLPVQSGSDRILK+MNRRH A EY ++I+RIR+VRPD+
Sbjct: 181 PRDMDDSLIAAHRDLRQLMPYLHLPVQSGSDRILKAMNRRHKADEYLRLIERIRNVRPDM 240

Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAE 389
           A+S DFIVGFPGETD DF  TM LV  + YAQA+SFKYSPR GTPG+++ + V+E VK E
Sbjct: 241 ALSGDFIVGFPGETDQDFEDTMQLVRDVNYAQAYSFKYSPRPGTPGADLDDHVEEAVKDE 300

Query: 390 RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGD 449
           RL  LQ  L  QQ +F D+ +G+ ++VL+EK G+E G++VGRSPWL  V+++     +GD
Sbjct: 301 RLQRLQALLSAQQYAFQDSMIGRKMDVLLEKPGREAGQMVGRSPWLLPVIIDDNKDRVGD 360

Query: 450 IIKVRITDVKISTLYGE 466
           II V+I     ++L  +
Sbjct: 361 IIHVKIVSTGTNSLIAQ 377


>gi|163747528|ref|ZP_02154878.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Oceanibulbus indolifex
           HEL-45]
 gi|161379206|gb|EDQ03625.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Oceanibulbus indolifex
           HEL-45]
          Length = 434

 Score =  484 bits (1246), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 238/440 (54%), Positives = 313/440 (71%), Gaps = 14/440 (3%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P++ F+K+YGCQMNVYDS RM +    QGY   +  DDAD+I+LNTCHIREKAAEKVYS 
Sbjct: 4   PKKLFIKTYGCQMNVYDSERMAESLGGQGYVTTDKADDADMILLNTCHIREKAAEKVYSE 63

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR++ LK++R     DL + VAGCVAQAEG EI+RR P V++VVGPQ+Y+RLPE+  + 
Sbjct: 64  LGRLKPLKDAR----PDLKIGVAGCVAQAEGAEIMRRQPAVDLVVGPQSYHRLPEMEAKV 119

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           R G+  +DTD+  EDKF+ L         KR   AFLT+QEGCDKFC FCVVPYTRG E+
Sbjct: 120 RSGQSALDTDFPAEDKFDHLK---SRPKAKRAPAAFLTVQEGCDKFCAFCVVPYTRGAEV 176

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR   +V++EAR L++ GV E+TLLGQNVNA+ G G+     T +DL+ +L+++ GL R+
Sbjct: 177 SRPAEKVLEEARDLVERGVREVTLLGQNVNAYHG-GM-----TLADLIRALAKVDGLERI 230

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           RYTTSHP DM D LI AHG++  LMPYLHLPVQSGSD ILK MNR HTA  Y ++++RIR
Sbjct: 231 RYTTSHPNDMGDDLIAAHGEVPELMPYLHLPVQSGSDHILKRMNRSHTAESYLKLLERIR 290

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
             RPDI +S DFIVGFP E+D DF ATM+LV ++ Y  A+SFKYS R GTP +     VD
Sbjct: 291 EARPDILLSGDFIVGFPEESDADFEATMELVRQVRYGYAYSFKYSTRPGTPAAER-PLVD 349

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
             V  +RL  LQ  + + Q     + VG+ + VL+EK G+  G+++G+S +L +V + + 
Sbjct: 350 PAVADDRLQRLQGLITQHQREIQQSMVGREVSVLVEKQGRLPGQMLGKSEYLHAVHIENC 409

Query: 444 NHNIGDIIKVRITDVKISTL 463
              IGDI +VR+T+ K ++L
Sbjct: 410 TAAIGDIQRVRVTEAKTNSL 429


>gi|126735009|ref|ZP_01750755.1| tRNA-i(6)A37 modification enzyme MiaB [Roseobacter sp. CCS2]
 gi|126715564|gb|EBA12429.1| tRNA-i(6)A37 modification enzyme MiaB [Roseobacter sp. CCS2]
          Length = 435

 Score =  484 bits (1245), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 240/448 (53%), Positives = 317/448 (70%), Gaps = 17/448 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
            P++ ++K+YGCQMNVYDS RM +    +GY    + DDAD+I+LNTCHIREKAAEKVYS
Sbjct: 3   APKKLYIKTYGCQMNVYDSERMAEALGGKGYVETQTPDDADMILLNTCHIREKAAEKVYS 62

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            LGR + LK     E  DL + VAGCVAQAEGEEI++R P+V++VVGPQ+Y+RLP + + 
Sbjct: 63  ELGRFKRLK----AENPDLKIGVAGCVAQAEGEEIIKRQPMVDLVVGPQSYHRLPAMDDA 118

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            + G + +DTD+  +DKFE L         KRG TAFLT+QEGCDKFC FCVVPYTRG E
Sbjct: 119 IQTGAKALDTDFPDDDKFETLKTR---TKAKRGPTAFLTVQEGCDKFCAFCVVPYTRGAE 175

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK--GLDGEKCTFSDLLYSLSEIKGL 260
           +SR   +++ EA++L+++GV EITLLGQNVNA+ G   GL G       L+++L ++ GL
Sbjct: 176 VSRPADRIIREAQELVESGVKEITLLGQNVNAYHGHAGGLAG-------LIWALDKVDGL 228

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+TTSHP DM D LI+AHG  D LMPYLHLPVQSGSDRILK+MNR+HT   Y ++I 
Sbjct: 229 ERIRFTTSHPNDMDDALIEAHGRCDKLMPYLHLPVQSGSDRILKAMNRKHTGESYVRLIA 288

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           RIR  RPD+ +S DFIVGFPGETD DF  TM LV  + Y QA+SFKYS R GTP +    
Sbjct: 289 RIRQARPDLLLSGDFIVGFPGETDQDFEDTMQLVRDVHYGQAYSFKYSTRPGTPAAEK-P 347

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440
           Q+ E+V  +RL  LQ  LREQQ +   A VG+ ++VL EK G+E G+++G+S +L +V  
Sbjct: 348 QLPEDVMNDRLQRLQALLREQQQATQAAMVGREVKVLFEKAGREPGQMIGKSEYLHAVYA 407

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
           ++    IG + +V++     ++L G L+
Sbjct: 408 DAPADVIGQVRRVKVVQDSPNSLRGALM 435


>gi|114799640|ref|YP_758837.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Hyphomonas
           neptunium ATCC 15444]
 gi|122942826|sp|Q0C606|MIAB_HYPNA RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|114739814|gb|ABI77939.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Hyphomonas neptunium ATCC
           15444]
          Length = 449

 Score =  483 bits (1243), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 240/447 (53%), Positives = 309/447 (69%), Gaps = 13/447 (2%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
            F+++YGCQMNVYDS R+ D+    GY  V + + ADL+V+NTCHIREKA EKVYS LG+
Sbjct: 4   LFIRTYGCQMNVYDSERIRDVLRPLGYAPVETPESADLVVVNTCHIREKATEKVYSELGQ 63

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR-- 144
           ++ +K +    GG + + VAGCVAQAEGEE++RR P V++V+GPQ Y++LPE++ RA   
Sbjct: 64  LKRMKEA---SGGRMTIAVAGCVAQAEGEELIRRQPAVDLVLGPQAYHKLPEMIARASRA 120

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G R+ +T++   +KF+ L           G  AF+++QEGCDKFCTFCVVPYTRG E+S
Sbjct: 121 IGDRL-ETEFDTVEKFDALPKT----READGPAAFVSVQEGCDKFCTFCVVPYTRGAEMS 175

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL---DGEKCTFSDLLYSLSEIKGLV 261
           R +  +V E R L   GV EITLLGQNVNA+ G       GE  T   L   LS+I G+ 
Sbjct: 176 RRVDDIVFETRSLASQGVREITLLGQNVNAFHGPAPVLEGGEDWTLGQLCRHLSKIGGIE 235

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+RYTTSHPRDM D LI AHGD   +MP+LHLPVQSGSDRILK+MNR HTA  YR II R
Sbjct: 236 RIRYTTSHPRDMDDDLIAAHGDTPAMMPFLHLPVQSGSDRILKAMNRGHTADHYRDIITR 295

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R+ RPDIAI+SDFIVGFPGE+D DF ATM LV  IGYA A+SFKYS R GTP + M   
Sbjct: 296 VRAARPDIAIASDFIVGFPGESDADFEATMQLVRDIGYAIAYSFKYSSRPGTPAAEMHGH 355

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           + E+VK  RL  LQ  LREQQ  FN + +G+ + VL+   G+  G++ GRSP+LQ+V   
Sbjct: 356 LSESVKDARLQALQALLREQQTEFNASQIGKTLPVLVTGKGRNAGQMHGRSPYLQAVHFE 415

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
             +   G I+ V++    +++L GELV
Sbjct: 416 GPDDLNGKIVDVKVIGASLNSLTGELV 442


>gi|254437886|ref|ZP_05051380.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Octadecabacter
           antarcticus 307]
 gi|198253332|gb|EDY77646.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Octadecabacter
           antarcticus 307]
          Length = 441

 Score =  483 bits (1243), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 239/451 (52%), Positives = 321/451 (71%), Gaps = 17/451 (3%)

Query: 19  DQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAE 78
           D    P++ F+K+YGCQMNVYDS RM +   +QGY   +   DAD+I+LNTCHIREKAAE
Sbjct: 5   DSGPSPKKLFIKTYGCQMNVYDSERMAESLGTQGYVTTDVAADADMILLNTCHIREKAAE 64

Query: 79  KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPE 138
           KVYS LGR++ LK ++     DL + V GCVAQAEG EI+RR P+V++VVGPQ+Y+RLP 
Sbjct: 65  KVYSELGRLKPLKANKP----DLKIGVTGCVAQAEGAEIMRRQPMVDLVVGPQSYHRLPS 120

Query: 139 LLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
           + +    G++ +DTD+  +DKFE L         KRG  AFLT+QEGCDKFC FCVVPYT
Sbjct: 121 MEQAVARGEKALDTDFPEDDKFETLK---SRSKAKRGPCAFLTVQEGCDKFCAFCVVPYT 177

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK--GLDGEKCTFSDLLYSLSE 256
           RG E+SR   +++ EA++L++ GV EITLLGQNVNA+ G   GL G       L++ L +
Sbjct: 178 RGSEVSRPADRIIREAQELVETGVREITLLGQNVNAYHGHAGGLAG-------LIWDLDK 230

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           + GL R+R+TTSHP DM D LI+AHG  D LMPYLHLPVQSGSD++LK+MNR+HT  +Y 
Sbjct: 231 VDGLERIRFTTSHPNDMDDALIEAHGTCDKLMPYLHLPVQSGSDKVLKAMNRKHTRDQYF 290

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
            +I+RIR+ RPD+ +S DFIVGFPGET+ DF  TMDLV  +GY QA+SFKYS R GTP +
Sbjct: 291 VLIERIRAARPDLLLSGDFIVGFPGETEADFEDTMDLVRTVGYGQAYSFKYSTRPGTPAA 350

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQ 436
               QVDE+VK +RL  LQ  L +QQ     + +G+ ++VL EK G+E G+++G+S +L 
Sbjct: 351 ERA-QVDEDVKLDRLHRLQALLGDQQREIQTSMIGRTVKVLFEKKGRESGQMIGKSEYLH 409

Query: 437 SVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
           +V  ++ +  +GD+  VRI   + ++L GE+
Sbjct: 410 AVFADTTDVEVGDLRDVRIVKSERNSLGGEI 440


>gi|294012042|ref|YP_003545502.1| bifunctional enzyme involved in thiolation and methylation of tRNA
           [Sphingobium japonicum UT26S]
 gi|292675372|dbj|BAI96890.1| bifunctional enzyme involved in thiolation and methylation of tRNA
           [Sphingobium japonicum UT26S]
          Length = 449

 Score =  482 bits (1241), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 236/448 (52%), Positives = 310/448 (69%), Gaps = 10/448 (2%)

Query: 19  DQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAE 78
           D    P  F VKS+GCQMNVYD  RM ++   +G        +ADL++LNTCHIREKA +
Sbjct: 5   DAQKTPATFHVKSFGCQMNVYDGERMAELLGERGMTAAADGAEADLVILNTCHIREKAVD 64

Query: 79  KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPE 138
           KVYS +GR+     SR       ++ VAGCVAQAEG EI RR+  V++VVGPQ Y+RLP+
Sbjct: 65  KVYSDIGRMTREDGSRP------MIAVAGCVAQAEGGEIQRRARNVDIVVGPQAYHRLPD 118

Query: 139 LLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
           L++RA  G++ VDTD  +  KF  L       +R+   TAFLTI EGCDKFCT+CVVPYT
Sbjct: 119 LIDRAGRGEQAVDTDMPLASKFGALP----SRSRQARPTAFLTIMEGCDKFCTYCVVPYT 174

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258
           RG EISRS S ++DEA+ L+D GV EITLLGQNVNAW G+   G       L+  L++I 
Sbjct: 175 RGAEISRSWSAILDEAKALVDGGVGEITLLGQNVNAWTGEDDKGRMQGMDGLVRELAKID 234

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
            L R+RYTTSHP DMSD LI AHGD   LMP+LHLPVQSG+DR+LK+MNR H+A  Y +I
Sbjct: 235 ALKRIRYTTSHPNDMSDGLIAAHGDEAKLMPFLHLPVQSGNDRVLKAMNRSHSADSYLRI 294

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           I+R+R+ RPDIA+S DFIVGFPGETD +F  T+ +V+++ YAQ +SFKYSPR GTP ++M
Sbjct: 295 IERVRAARPDIALSGDFIVGFPGETDAEFEDTLKIVEQVRYAQCYSFKYSPRPGTPAADM 354

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSV 438
             Q+   V  ERL  LQ  +   Q  FN A VG+  ++L+E+ G+  G+L+G++PWLQSV
Sbjct: 355 DGQIPAEVMDERLARLQSLINRHQAEFNAATVGRRTDILLERKGRHPGQLIGKTPWLQSV 414

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGE 466
            + +   +IGD+++V I     ++L G+
Sbjct: 415 HVTAPELSIGDMVEVDIISAGPNSLAGQ 442


>gi|85705226|ref|ZP_01036325.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Roseovarius sp. 217]
 gi|85670099|gb|EAQ24961.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Roseovarius sp. 217]
          Length = 446

 Score =  479 bits (1233), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 239/444 (53%), Positives = 319/444 (71%), Gaps = 10/444 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ ++K+YGCQMNVYDS RM +     GY       +AD+I+LNTCHIREKAAEKVYS L
Sbjct: 11  KKLYIKTYGCQMNVYDSERMAEAMGGAGYVETQDPAEADMILLNTCHIREKAAEKVYSEL 70

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR+R  K+ +     DL + V GCVAQAEGEEI+RR P+V++VVGPQ+Y+RLPE+  + R
Sbjct: 71  GRMRQFKDDKP----DLKIGVTGCVAQAEGEEIMRRQPLVDLVVGPQSYHRLPEMEAQVR 126

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G + +DTD+ +EDKF++L          RG TAFLT+QEGCDKFC FCVVPYTRG E+S
Sbjct: 127 AGGKALDTDFPLEDKFDKLRHRP---KAARGPTAFLTVQEGCDKFCAFCVVPYTRGSEVS 183

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R +++V++EAR L++ GV EITLLGQNVNA+ G G +G     + L+++L++I GL R+R
Sbjct: 184 RPVARVLEEARDLVERGVREITLLGQNVNAYHGAG-EGGDWGLARLIWALNDIDGLERIR 242

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +TTSHP DM D LI AHGD   LMPYLHLPVQSGSD+ILK MNR HTA  Y ++I+RIR+
Sbjct: 243 FTTSHPNDMDDDLIAAHGDCAKLMPYLHLPVQSGSDKILKRMNRSHTAESYLRLIERIRA 302

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
            RPDI IS DFIVGFP ET++DF+AT+DL++ + Y  AFSFKYS R GTP +    QV E
Sbjct: 303 ARPDILISGDFIVGFPEETEEDFQATLDLIEAVTYGYAFSFKYSTRPGTPAAERA-QVAE 361

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
            VK ERL  LQ  +  QQ +  ++ VG+ + VL EK G+  G++VG+S +L +V +   +
Sbjct: 362 AVKTERLHRLQDLIARQQRAAQNSMVGRTVGVLFEKPGRMPGQMVGKSDYLHAVHVTG-D 420

Query: 445 HNIGDIIKVRITDVKISTLYGELV 468
             +GD+ +V I +   ++L G L+
Sbjct: 421 VAVGDLRQVEIIESGPNSLAGRLL 444


>gi|163734559|ref|ZP_02141998.1| tRNA-i(6)A37 thiotransferase enzyme MiaB, putative [Roseobacter
           litoralis Och 149]
 gi|161392052|gb|EDQ16382.1| tRNA-i(6)A37 thiotransferase enzyme MiaB, putative [Roseobacter
           litoralis Och 149]
          Length = 426

 Score =  479 bits (1233), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 236/428 (55%), Positives = 311/428 (72%), Gaps = 8/428 (1%)

Query: 36  MNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRI 95
           MNVYDS RM +   ++GY    + +DAD+I+LNTCHIREKAAEKVYS LGR+++LK    
Sbjct: 1   MNVYDSERMSEALVAEGYVETKTAEDADMILLNTCHIREKAAEKVYSELGRLKSLK---- 56

Query: 96  KEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYS 155
            +  DL + VAGCVAQAEGEEI+RR P V++VVGPQ+Y+RLP++  R R G + +DTD+ 
Sbjct: 57  ADNPDLKIGVAGCVAQAEGEEIMRRQPAVDLVVGPQSYHRLPQMEARLREGHKALDTDFP 116

Query: 156 VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEAR 215
            EDKFE L         +R  +AFLT+QEGCDKFC FCVVPYTRG E+SR +++V+DEAR
Sbjct: 117 PEDKFEELKARPKA---RRAPSAFLTVQEGCDKFCAFCVVPYTRGAEVSRPVTRVLDEAR 173

Query: 216 KLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSD 275
            L++ GV EITLLGQNVNA+ G G DG + T + L+++L++I GL R+R+TTSHP DM D
Sbjct: 174 DLVERGVREITLLGQNVNAYHGAGADGNEQTLAQLIWALNDIDGLERIRFTTSHPNDMRD 233

Query: 276 CLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDF 335
            LI+AH D   LMPYLHLPVQSGSD+ILK MNR HTA  Y ++I+RIR+ RPDI +S DF
Sbjct: 234 DLIEAHRDCPKLMPYLHLPVQSGSDKILKRMNRSHTADSYLRLIERIRAGRPDILLSGDF 293

Query: 336 IVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQ 395
           IVGFP ET+ DF+AT+DL++ + Y  A+SFKYS R GTP +    QVD +   ERL  +Q
Sbjct: 294 IVGFPEETEADFQATLDLIEAVNYGYAYSFKYSTRPGTPAAERA-QVDPDEADERLQRIQ 352

Query: 396 KKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRI 455
             +  QQ     + VG+ + VLIEK G+  G++VG+S +L +V ++  N  IGDI+ VRI
Sbjct: 353 ALITRQQQDIQQSMVGRDVSVLIEKPGRFDGQMVGKSEYLHAVHVDQCNARIGDILPVRI 412

Query: 456 TDVKISTL 463
            + K ++L
Sbjct: 413 VEAKRNSL 420


>gi|119386409|ref|YP_917464.1| RNA modification protein [Paracoccus denitrificans PD1222]
 gi|229890585|sp|A1B8C4|MIAB_PARDP RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|119377004|gb|ABL71768.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Paracoccus denitrificans
           PD1222]
          Length = 445

 Score =  478 bits (1231), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 244/457 (53%), Positives = 314/457 (68%), Gaps = 12/457 (2%)

Query: 13  MVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHI 72
           M  Q        ++ F+K+YGCQMNVYDS RM +   ++GY    +  DAD+++LNTCHI
Sbjct: 1   MSDQASKPAPAVKKLFIKTYGCQMNVYDSQRMAEAMGAEGYVLTENQSDADMVLLNTCHI 60

Query: 73  REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT 132
           REKAAEK+YS LGR++ LK  R     DL + VAGCVAQAEGEEI RR PIV++VVGPQ 
Sbjct: 61  REKAAEKLYSDLGRLKPLKAERP----DLKIGVAGCVAQAEGEEIQRRMPIVDLVVGPQA 116

Query: 133 YYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTF 192
           Y+RLP +   AR G R VDT++  EDKFE L         +R   AFLT+QEGCDKFC F
Sbjct: 117 YHRLPAM---ARAG-RGVDTEFPAEDKFEHLPKP---AATRRAPAAFLTVQEGCDKFCAF 169

Query: 193 CVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLY 252
           CVVPYTRG E+SR +S+++ EAR L+  GV EITLLGQNVN W G+G +G +  F  L+ 
Sbjct: 170 CVVPYTRGAEVSRPVSRILAEARDLVARGVREITLLGQNVNGWHGEGPEGSEWGFGRLIR 229

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
           +++EI GL R+RYTTSHP DM+D LI AH D   LMPYLHLPVQSGSDRILK+MNRRHT 
Sbjct: 230 AIAEIDGLDRIRYTTSHPNDMADDLIAAHRDEPKLMPYLHLPVQSGSDRILKAMNRRHTV 289

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
            +Y ++I+RIR  RPDI ++SDFIVGFPGETD D + T++LV  + +  AFSFKYSPR G
Sbjct: 290 DQYLRLIERIREARPDIMLTSDFIVGFPGETDQDHQGTLELVRAVNFGTAFSFKYSPRPG 349

Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS 432
           TP     E ++  V   RL  LQ  L  QQ +  +  VG+ + VL EK G+  G++VG+S
Sbjct: 350 TPAYERPE-IEGAVADARLQELQALLTSQQKAAQEGMVGRELGVLFEKPGRNPGQMVGKS 408

Query: 433 PWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
            +L +V + +    +GD+++VRIT    ++L G L  
Sbjct: 409 DYLHAVFVEAPAAKVGDLVRVRITHSAPNSLAGVLAA 445


>gi|58040437|ref|YP_192401.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Gluconobacter
           oxydans 621H]
 gi|58002851|gb|AAW61745.1| MiaB protein [Gluconobacter oxydans 621H]
          Length = 441

 Score =  478 bits (1231), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 237/435 (54%), Positives = 310/435 (71%), Gaps = 3/435 (0%)

Query: 36  MNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRI 95
           MNVYDS RM D+    GY  V   +DAD+++LNTCHIRE+A EKV+S LGR+R +++ R+
Sbjct: 1   MNVYDSARMADVLRPLGYGPVERPEDADMVILNTCHIRERATEKVFSELGRLRKIRDERM 60

Query: 96  KEGGD-LLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV-VDTD 153
             G D  ++ VAGCVAQAEGE IL R+P V++V+GPQTY++LPE++ RA       ++TD
Sbjct: 61  SNGADRTIIAVAGCVAQAEGEVILTRAPYVDLVLGPQTYHKLPEMVARAARAGGAVIETD 120

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           + VE KF+ L   D     +  +TAFLTIQEGCDKFC+FCVVPYTRG E SR ++ V+ E
Sbjct: 121 FPVEQKFDFLP-TDAAPQTQGNLTAFLTIQEGCDKFCSFCVVPYTRGAETSRPVASVLAE 179

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
           AR++ ++GV EITLLGQNVNA+ G    G   T + L+  L++I GL R+RY TSHPRD+
Sbjct: 180 ARRMAESGVREITLLGQNVNAYHGDDGKGGSETLAGLVEQLAQIPGLGRIRYMTSHPRDV 239

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
              LI AH D   LMP+LHLPVQSGSDRILK+MNR HTA EYR+ + ++R  RPD+A+SS
Sbjct: 240 DQSLIDAHRDNPALMPFLHLPVQSGSDRILKAMNRGHTADEYRESVRKLREARPDLALSS 299

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLC 393
           DFIVG PGET++DF ATM LV  IG+A A+SFKYSPR GTP +    QV E+VK  RL  
Sbjct: 300 DFIVGHPGETEEDFEATMQLVRDIGFAMAYSFKYSPRPGTPAAGQPMQVPEDVKDRRLAE 359

Query: 394 LQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKV 453
           LQ  LREQQ +FN   VG + E+L+   G++ G++ GRSP+LQ V  +  +H IG  +KV
Sbjct: 360 LQALLREQQDAFNADMVGTVQEILVTNRGRKPGQIAGRSPYLQPVHFDGPDHLIGSTVKV 419

Query: 454 RITDVKISTLYGELV 468
            IT  + ++L G L+
Sbjct: 420 AITTRRTNSLGGTLI 434


>gi|94498011|ref|ZP_01304575.1| 2-methylthioadenine synthetase [Sphingomonas sp. SKA58]
 gi|94422594|gb|EAT07631.1| 2-methylthioadenine synthetase [Sphingomonas sp. SKA58]
          Length = 428

 Score =  478 bits (1229), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 235/433 (54%), Positives = 299/433 (69%), Gaps = 10/433 (2%)

Query: 36  MNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRI 95
           MNVYD  RM +M  +QG        DADL++LNTCHIREKA +KVYS +GR+     SR 
Sbjct: 1   MNVYDGERMAEMLGTQGMTPAAEGTDADLVILNTCHIREKAVDKVYSDIGRLTRDDGSRP 60

Query: 96  KEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYS 155
                 ++ VAGCVAQAEG EI RR+  V++VVGPQ Y+RLP+L+++   G+  VDTD  
Sbjct: 61  ------MIAVAGCVAQAEGSEIQRRARNVDIVVGPQAYHRLPDLIDKVGRGEAAVDTDMP 114

Query: 156 VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEAR 215
              KF  L        ++   TAFLTI EGCDKFCT+CVVPYTRG EISRS S +VDEA+
Sbjct: 115 AASKFGALP----ARTKQARPTAFLTIMEGCDKFCTYCVVPYTRGAEISRSWSAIVDEAK 170

Query: 216 KLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSD 275
            L+D G  EITLLGQNVNAW G+   G       L+  L++I  L R+RYTTSHP DMSD
Sbjct: 171 ALVDGGAREITLLGQNVNAWTGEDDKGRAQGMDGLVRELAKIPDLRRIRYTTSHPNDMSD 230

Query: 276 CLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDF 335
            LI AHGD+D LMP+LHLPVQ+G+DRILK+MNR H+A  Y +II+R+R  RPDIAIS DF
Sbjct: 231 GLIAAHGDIDKLMPFLHLPVQAGNDRILKAMNRSHSADSYLRIIERVRQARPDIAISGDF 290

Query: 336 IVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQ 395
           IVGFPGETD +F  T+ +V+++ YAQ +SFKYSPR GTP ++M  Q+   V  ERL  LQ
Sbjct: 291 IVGFPGETDAEFEDTLRIVEQVRYAQCYSFKYSPRPGTPAADMDHQIPAAVMDERLSRLQ 350

Query: 396 KKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRI 455
             L  QQ  FN A VG+  ++L+E+ G+  G+L+G+SPWLQSVV+ +   +IGD++ V I
Sbjct: 351 ALLNRQQAEFNAATVGRTTQILLERKGRHPGQLIGKSPWLQSVVVTAPELSIGDLVNVDI 410

Query: 456 TDVKISTLYGELV 468
                ++L GE V
Sbjct: 411 ISAGPNSLAGETV 423


>gi|307293142|ref|ZP_07572988.1| RNA modification enzyme, MiaB family [Sphingobium chlorophenolicum
           L-1]
 gi|306881208|gb|EFN12424.1| RNA modification enzyme, MiaB family [Sphingobium chlorophenolicum
           L-1]
          Length = 449

 Score =  478 bits (1229), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 234/444 (52%), Positives = 307/444 (69%), Gaps = 10/444 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
            P  F VKS+GCQMNVYD  RM +M  ++G        +ADL++LNTCHIREKA +KVYS
Sbjct: 9   TPTTFHVKSFGCQMNVYDGERMAEMLGTRGMIAAAEGVEADLVILNTCHIREKAVDKVYS 68

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +GR+     SR       ++ VAGCVAQAEG EI RR+  V++VVGPQ Y+RLP+L+++
Sbjct: 69  DIGRMTREDGSRP------MIAVAGCVAQAEGGEIQRRARNVDIVVGPQAYHRLPDLIDK 122

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           A  G++ VDTD  +  KF  L     G  ++   TAFLTI EGCDKFCT+CVVPYTRG E
Sbjct: 123 AGRGEQAVDTDMPLASKFAALP----GRTKQARPTAFLTIMEGCDKFCTYCVVPYTRGAE 178

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           ISR  + ++DEA+ L+D GV EITLLGQNVNAW G+   G       L+  L++I  L R
Sbjct: 179 ISRGWNAILDEAKALVDGGVREITLLGQNVNAWTGEDDKGRTQGMDGLVRELAKIDALKR 238

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +RYTTSHP DMSD LI AHGD   LMP+LHLPVQSG+DRILK+MNR H+   Y +II+R+
Sbjct: 239 IRYTTSHPNDMSDGLIAAHGDEPKLMPFLHLPVQSGNDRILKAMNRSHSTDSYLRIIERV 298

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R  R D+A+S DFIVGFPGETD +F  T+ +V+++ YAQ +SFKYSPR GTP ++M  Q+
Sbjct: 299 RECRGDMALSGDFIVGFPGETDAEFEDTLKIVEQVRYAQCYSFKYSPRPGTPAADMDHQI 358

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
              V  ERL  LQ  +   QV FN A VG+  ++L+E+ G+  G+L+G++PWLQSV + +
Sbjct: 359 PAEVMGERLARLQAVINRHQVEFNAATVGRTTDILLERKGRHPGQLIGKTPWLQSVHVTA 418

Query: 443 KNHNIGDIIKVRITDVKISTLYGE 466
              +IGD+I+V I     ++L GE
Sbjct: 419 PELSIGDMIEVDIISAGPNSLAGE 442


>gi|296447885|ref|ZP_06889796.1| RNA modification enzyme, MiaB family [Methylosinus trichosporium
           OB3b]
 gi|296254626|gb|EFH01742.1| RNA modification enzyme, MiaB family [Methylosinus trichosporium
           OB3b]
          Length = 437

 Score =  477 bits (1228), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 240/432 (55%), Positives = 310/432 (71%), Gaps = 4/432 (0%)

Query: 36  MNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRI 95
           MNVYD+ RM D+   +GY    S DDADL+VLNTCHIREKA +KVYS LGR+  LK+ R 
Sbjct: 1   MNVYDAERMTDLLAGRGYGEAASEDDADLVVLNTCHIREKATDKVYSELGRLARLKSERG 60

Query: 96  KEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYS 155
            EG D  +VVAGCVAQAEG E+LRR   V++VVGPQ+Y+RL ELL RA  G+R+ +TD++
Sbjct: 61  AEGRDFRIVVAGCVAQAEGVEVLRRQRAVDLVVGPQSYHRLDELLTRAEAGERIAETDFA 120

Query: 156 VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEAR 215
           V DKF  L          RGVTAF+T QEGCDKFC+FCVVPYTRG E+SRS++++V EA 
Sbjct: 121 VADKFAALRRAP----IPRGVTAFVTAQEGCDKFCSFCVVPYTRGAEVSRSVAEIVAEAE 176

Query: 216 KLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSD 275
            L   GV EIT++GQNVNA+RG+  +G   T   LL  LS I+G+ RLRYTTSHP DM  
Sbjct: 177 ALAAAGVREITIIGQNVNAYRGEDENGAPATLPRLLARLSRIEGVTRLRYTTSHPIDMDQ 236

Query: 276 CLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDF 335
            LI AH  L +L P++HLPVQSGS+R+L++MNRRH A  Y  I+ R+R+ RPDIA+SSDF
Sbjct: 237 ELIDAHASLPMLAPFVHLPVQSGSNRVLRAMNRRHDADFYLDIVARLRAARPDIALSSDF 296

Query: 336 IVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQ 395
           IVGFPGETD DF AT+ L+  +G+A +FSFKYSPR GTPG+   +Q+ E+VK+ERL  LQ
Sbjct: 297 IVGFPGETDADFEATLALIRAVGFASSFSFKYSPRPGTPGAERDDQIAEDVKSERLAALQ 356

Query: 396 KKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRI 455
             L +Q+ +FN A VG+ +E L EK G+  G++ G+SP++Q+V  +     IG I+ V I
Sbjct: 357 ALLEQQRQAFNAATVGRTVETLFEKPGRHGGQIAGKSPYMQAVHASGGPELIGSILPVTI 416

Query: 456 TDVKISTLYGEL 467
                ++L G +
Sbjct: 417 VAAGSNSLAGTI 428


>gi|148260356|ref|YP_001234483.1| RNA modification protein [Acidiphilium cryptum JF-5]
 gi|229890413|sp|A5FY82|MIAB_ACICJ RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|146402037|gb|ABQ30564.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Acidiphilium cryptum
           JF-5]
          Length = 450

 Score =  476 bits (1225), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 239/443 (53%), Positives = 302/443 (68%), Gaps = 9/443 (2%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
             + ++GCQMNVYDS RM D+    GY +V +  DAD+++LNTCHIRE+A+EK++S LGR
Sbjct: 10  LHITTWGCQMNVYDSGRMADVLRPLGYRQV-ATQDADMVILNTCHIRERASEKLFSELGR 68

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           +R LK SR   GG +++ VAGCVAQAEG EIL R+P V++VVG Q Y+RLPEL+      
Sbjct: 69  LRALKESR---GGAMMIAVAGCVAQAEGAEILARAPHVDLVVGSQAYHRLPELIAEIEAK 125

Query: 147 KR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           +R V+DTD+    KF+ L          +G  AFL IQEGCDKFCTFCVVPYTRG E SR
Sbjct: 126 RRAVIDTDFPAAQKFDLLPEDQA----SQGPIAFLAIQEGCDKFCTFCVVPYTRGAEASR 181

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
             + ++ EAR+L+  G  EI LLGQNVNAW G+  DG     + LL  L++I GL RLRY
Sbjct: 182 PAAAILAEARRLVAGGAREIALLGQNVNAWHGEAPDGATWNLARLLAELADIDGLARLRY 241

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
           TTSHPRDM   LI AH D   LMP+LHLPVQSGSD IL  MNRRH A  +R+I   +R+ 
Sbjct: 242 TTSHPRDMDAALIAAHRDNPKLMPFLHLPVQSGSDAILARMNRRHGADLFRRIAGELRAA 301

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
           RPDIA+SSDFIVGFPGETD DF ATM LV + G+A A+SFKYS R GTP ++  +Q+DE 
Sbjct: 302 RPDIALSSDFIVGFPGETDADFAATMRLVRETGFALAYSFKYSRRPGTPAADAADQIDEA 361

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445
           VK  RL  LQ  LR+QQ +FN A VG+  EVL    G+  G+  GRSP+LQ VV+++ + 
Sbjct: 362 VKDARLQELQAVLRDQQHAFNRAQVGRSFEVLFTGPGRHPGQSAGRSPYLQPVVVDNADI 421

Query: 446 NIGDIIKVRITDVKISTLYGELV 468
             G +  V+I     ++L   L 
Sbjct: 422 PPGTLRTVKIVQSNPNSLMASLT 444


>gi|326403547|ref|YP_004283629.1| (dimethylallyl)adenosine tRNA methylthiotransferase MiaB
           [Acidiphilium multivorum AIU301]
 gi|325050409|dbj|BAJ80747.1| (dimethylallyl)adenosine tRNA methylthiotransferase MiaB
           [Acidiphilium multivorum AIU301]
          Length = 450

 Score =  476 bits (1224), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 239/443 (53%), Positives = 302/443 (68%), Gaps = 9/443 (2%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
             + ++GCQMNVYDS RM D+    GY +V +  DAD+++LNTCHIRE+A+EK++S LGR
Sbjct: 10  LHITTWGCQMNVYDSGRMADVLRPLGYRQV-ATQDADMVILNTCHIRERASEKLFSELGR 68

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           +R LK SR   GG +++ VAGCVAQAEG EIL R+P V++VVG Q Y+RLPEL+      
Sbjct: 69  LRALKESR---GGAMMIAVAGCVAQAEGAEILARAPHVDLVVGSQAYHRLPELIAEIEAK 125

Query: 147 KR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           +R V+DTD+    KF+ L          +G  AFL IQEGCDKFCTFCVVPYTRG E SR
Sbjct: 126 RRAVIDTDFPAAQKFDLLPEDQA----SQGPIAFLAIQEGCDKFCTFCVVPYTRGAEASR 181

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
             + ++ EAR+L+  G  EI LLGQNVNAW G+  DG     + LL  L++I GL RLRY
Sbjct: 182 PAAAILAEARRLVAGGAREIALLGQNVNAWHGEAPDGATWNLARLLAELADIDGLARLRY 241

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
           TTSHPRDM   LI AH D   LMP+LHLPVQSGSD IL  MNRRH A  +R+I   +R+ 
Sbjct: 242 TTSHPRDMDAALIAAHRDNPKLMPFLHLPVQSGSDAILARMNRRHGADLFRRIAGELRAA 301

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
           RPDIA+SSDFIVGFPGETD DF ATM LV + G+A A+SFKYS R GTP ++  +Q+DE 
Sbjct: 302 RPDIALSSDFIVGFPGETDADFAATMRLVRETGFALAYSFKYSRRPGTPAADAADQIDEA 361

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445
           VK  RL  LQ  LR+QQ +FN A VG+  EVL    G+  G+  GRSP+LQ VV+++ + 
Sbjct: 362 VKDARLQELQAVLRDQQHAFNRAQVGRSFEVLFTGPGRHPGQSTGRSPYLQPVVVDNADI 421

Query: 446 NIGDIIKVRITDVKISTLYGELV 468
             G +  V+I     ++L   L 
Sbjct: 422 PPGTLRTVKIVQSNPNSLMASLT 444


>gi|310815234|ref|YP_003963198.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Ketogulonicigenium vulgare Y25]
 gi|308753969|gb|ADO41898.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Ketogulonicigenium vulgare Y25]
          Length = 440

 Score =  475 bits (1222), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 236/451 (52%), Positives = 315/451 (69%), Gaps = 13/451 (2%)

Query: 19  DQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAE 78
           +Q    ++ F+K+YGCQMNVYDS RM +   +QGY   ++ ++AD+++LNTCHIREKAAE
Sbjct: 3   NQAEKTKKLFIKTYGCQMNVYDSERMAETLGAQGYVTTDNAEEADMVLLNTCHIREKAAE 62

Query: 79  KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPE 138
           KVYS LGR++ LK +  +    L + VAGCVAQAEG EI+RR P+V++VVGPQ+Y+ LP 
Sbjct: 63  KVYSDLGRLKPLKEANPQ----LKIGVAGCVAQAEGAEIMRRMPLVDLVVGPQSYHNLPA 118

Query: 139 LLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
           +  R + G+R VDTD+ V DKF +L         +RG TAFLT+QEGCDKFC FCVVPYT
Sbjct: 119 MEARVQSGRRAVDTDFEV-DKFTQLKARP---RAQRGPTAFLTVQEGCDKFCAFCVVPYT 174

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258
           RG E+SR   +++ EA+ L++ GV EITLLGQNVNAW G+G +G      DL+  L+ I 
Sbjct: 175 RGSEVSRPADKIIAEAQGLVEAGVREITLLGQNVNAWHGQGAEG----LGDLVRRLARID 230

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           GL R+RYTTSHP DM+D LI AH + + LMPYLHLPVQSGSDRILK+MNR+HTA +Y ++
Sbjct: 231 GLARIRYTTSHPNDMADDLIAAHAEEEKLMPYLHLPVQSGSDRILKAMNRKHTAEQYLRL 290

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           I+RIR+ RPDI +SSDFIVGFPGETD DF  T+ L  ++G+  +FSFKYS R GTP +  
Sbjct: 291 IERIRAARPDIVLSSDFIVGFPGETDQDFEDTLQLCAEVGFGASFSFKYSARPGTPAAEK 350

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSV 438
            E     + A RL  LQ ++  QQ +   + VG+ I VL EK G+  G+L+G+S +L +V
Sbjct: 351 PELPPALLDA-RLQRLQAQIIAQQNASLASMVGRTIPVLFEKKGRMPGQLIGKSGYLHAV 409

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
             ++   +I +I  V I     ++L G L  
Sbjct: 410 HADAPESDIAEIRMVEIMATSTNSLAGRLAT 440


>gi|126727641|ref|ZP_01743473.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Rhodobacterales bacterium
           HTCC2150]
 gi|126703057|gb|EBA02158.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Rhodobacterales bacterium
           HTCC2150]
          Length = 424

 Score =  472 bits (1215), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 234/433 (54%), Positives = 312/433 (72%), Gaps = 9/433 (2%)

Query: 36  MNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRI 95
           MNVYDS RM +   ++GYE+    D AD+I+LNTCHIREKAAEK+YS LGR++  K ++ 
Sbjct: 1   MNVYDSERMAEALGTKGYEQTTDADQADMILLNTCHIREKAAEKMYSELGRLKQFKLAK- 59

Query: 96  KEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYS 155
               ++   VAGCVAQAEG EI+ R P+V++VVGPQ+Y+RLP++ +    G++ +DTD+ 
Sbjct: 60  ---PEMKFAVAGCVAQAEGGEIIERQPMVDLVVGPQSYHRLPKMADAIDRGEKAIDTDFP 116

Query: 156 VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEAR 215
            EDKFE L         +R  +AFLT+QEGCDKFCTFCVVPYTRG E+SR + +++ EAR
Sbjct: 117 EEDKFEELK---DRPKARRAPSAFLTVQEGCDKFCTFCVVPYTRGAEVSRPVDRILREAR 173

Query: 216 KLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSD 275
           +L++ GV EI LLGQNVNA+ G+G DG+  T + L+  ++ I+GL R+R+TTSHPRDM  
Sbjct: 174 ELVERGVAEINLLGQNVNAYHGEGPDGD-WTLAQLIREMATIEGLERIRFTTSHPRDMEQ 232

Query: 276 CLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDF 335
            LI AHGD   LMPYLHLPVQSGSD+ILK+MNR HT  EY  +I RIR VRPD+ +S DF
Sbjct: 233 DLIDAHGDCAKLMPYLHLPVQSGSDKILKAMNRGHTREEYFALIKRIRDVRPDLLLSGDF 292

Query: 336 IVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQ 395
           IVGFPGET++DF  TMDLV+++G+ QA+SFKYS R GTP +    QVDE+VK+ERL  LQ
Sbjct: 293 IVGFPGETEEDFMDTMDLVEQVGFGQAYSFKYSTRPGTPAAERA-QVDEDVKSERLQRLQ 351

Query: 396 KKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRI 455
             L +QQ +  DA VG+   VL EK G++ G+L+G+S  L +V   +    IG + +VR+
Sbjct: 352 ALLGKQQKAAQDAMVGRETTVLFEKQGRDPGQLIGKSENLHAVHAFADKSLIGTVRRVRV 411

Query: 456 TDVKISTLYGELV 468
                ++L GEL+
Sbjct: 412 IKSLTNSLTGELI 424


>gi|241761438|ref|ZP_04759526.1| RNA modification enzyme, MiaB family [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|241374345|gb|EER63842.1| RNA modification enzyme, MiaB family [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
          Length = 428

 Score =  472 bits (1214), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 230/433 (53%), Positives = 312/433 (72%), Gaps = 13/433 (3%)

Query: 36  MNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRI 95
           MN YD  RM ++  SQG +       ADL+VLNTCHIREKAAEKVYS +GR+R       
Sbjct: 1   MNSYDGERMSELLESQGMKAAEEAATADLVVLNTCHIREKAAEKVYSEIGRLRR------ 54

Query: 96  KEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYS 155
            +G   ++ +AGCVAQAEG E+L R+ +V++VVGPQ Y+ LPEL+E+A  GK VVD D  
Sbjct: 55  PDGSSPMIALAGCVAQAEGAEVLARTKMVDIVVGPQAYHHLPELIEKAASGK-VVDIDMP 113

Query: 156 VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEAR 215
           +E KF+ L        R+ G +AFLT+QEGCDKFCT+CVVPYTRG E+SR  S++V EA 
Sbjct: 114 LESKFDALP-----ERRQVGASAFLTVQEGCDKFCTYCVVPYTRGAEVSRPWSRIVKEAH 168

Query: 216 KLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSD 275
            L+D G  EITLLGQNVNAW G+   G       L+ +L++I GL R+RYTTSHP DM++
Sbjct: 169 ALVDKGAREITLLGQNVNAWTGEDEAGRSQGLDGLIRALAKIDGLERIRYTTSHPNDMTE 228

Query: 276 CLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDF 335
            LI+AHG++D LMP+LHLPVQSGS+RILK+MNR HTA  Y  +++R++ VRPDIA+S DF
Sbjct: 229 GLIEAHGEIDKLMPFLHLPVQSGSNRILKAMNRAHTAESYLTLMNRLKEVRPDIALSGDF 288

Query: 336 IVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQ 395
           IVGFPGE+++DF+AT+DL+ ++GY+ AFSF YSPR GTP ++M  Q+D  +  ERL  LQ
Sbjct: 289 IVGFPGESEEDFQATLDLISEVGYSLAFSFAYSPRPGTPAADMDNQIDPEISRERLQRLQ 348

Query: 396 KKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRI 455
             L +QQ  FN   +G+   VLIE+ GK+  +++G+SPWLQSV++ +    IGD+++V +
Sbjct: 349 ALLNQQQFDFNQQTIGRKATVLIERKGKKADQMIGKSPWLQSVIIEAPV-AIGDLVEVTL 407

Query: 456 TDVKISTLYGELV 468
           TD   +++ G+ +
Sbjct: 408 TDAGPNSVKGQFL 420


>gi|225631339|ref|ZP_03788011.1| tRNA-i(6)A37 modification enzyme MiaB [Wolbachia endosymbiont of
           Muscidifurax uniraptor]
 gi|225590961|gb|EEH12171.1| tRNA-i(6)A37 modification enzyme MiaB [Wolbachia endosymbiont of
           Muscidifurax uniraptor]
          Length = 439

 Score =  471 bits (1213), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 233/442 (52%), Positives = 317/442 (71%), Gaps = 13/442 (2%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
            ++K+YGCQMNVYDS+ ME++    G+  V+    ADL++LNTCHIREKAAEK+YS LG+
Sbjct: 4   LYIKTYGCQMNVYDSVLMENVIKPLGFNVVSDAGKADLVILNTCHIREKAAEKLYSELGK 63

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           I +L+        ++ +VVAGCVAQAEGEE+ RR+P V++VVGPQ+   LPEL+ +A   
Sbjct: 64  IHSLRK-------EMTIVVAGCVAQAEGEEVFRRAPFVDIVVGPQSIATLPELIVKASRS 116

Query: 147 K-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           K  V++TD+    KF++L   D  Y   +G +AFL IQEGCDKFCTFCVVPYTRG E SR
Sbjct: 117 KGHVINTDFPEVAKFDKLP--DECYGNSQGSSAFLAIQEGCDKFCTFCVVPYTRGAEYSR 174

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            ++++  EA KL+ NG  EI LLGQNVNA+ G+  +GE      L+  +++I+ L R+RY
Sbjct: 175 PVNEIFHEALKLVANGANEINLLGQNVNAYHGE-CEGEVWDLGKLISHIAKIEKLERIRY 233

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
           TTSHPRDM + L  AH +   LMP++HLPVQSGS++IL +MNR+HTA EY +IIDR R +
Sbjct: 234 TTSHPRDMHESLYLAHAEEPKLMPFVHLPVQSGSNKILHAMNRKHTAEEYLEIIDRFRKL 293

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
           +P+I  SSDFIVGFPGET+ DF  TM LV+K+ YAQA+SFKYSPR GTPG+   +QV E 
Sbjct: 294 KPEIEFSSDFIVGFPGETEKDFEETMKLVEKVRYAQAYSFKYSPRPGTPGAERKDQVPEE 353

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKGKLVGRSPWLQSVVLNSKN 444
           VK ERLL LQK + +QQ+ FN + VG+ I VL  +K GK + +++G+SP++QSV ++   
Sbjct: 354 VKTERLLRLQKLISKQQLEFNQSMVGKTIPVLFSDKKGKHQNQIIGKSPYMQSVCIDDSE 413

Query: 445 HNIGD-IIKVRITDVKISTLYG 465
               D I+ V++ + + S+L G
Sbjct: 414 DKYRDKIVNVKVLEARQSSLLG 435


>gi|42520296|ref|NP_966211.1| TRAM domain-containing protein [Wolbachia endosymbiont of
           Drosophila melanogaster]
 gi|225630141|ref|YP_002726932.1| tRNA-i(6)A37 modification enzyme MiaB [Wolbachia sp. wRi]
 gi|81652678|sp|Q73HW8|MIAB_WOLPM RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|42410034|gb|AAS14145.1| TRAM domain protein [Wolbachia endosymbiont of Drosophila
           melanogaster]
 gi|225592122|gb|ACN95141.1| tRNA-i(6)A37 modification enzyme MiaB [Wolbachia sp. wRi]
          Length = 439

 Score =  471 bits (1211), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 233/442 (52%), Positives = 317/442 (71%), Gaps = 13/442 (2%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
            ++K+YGCQMNVYDS+ ME++    G+  V+    ADL++LNTCHIREKAAEK+YS LG+
Sbjct: 4   LYIKTYGCQMNVYDSVLMENVIKPLGFNVVSDAGKADLVILNTCHIREKAAEKLYSELGK 63

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           I +L+        ++ +VVAGCVAQAEGEE+ RR+P V++VVGPQ+   LPEL+ +A   
Sbjct: 64  IHSLRK-------EMTIVVAGCVAQAEGEEVFRRAPFVDIVVGPQSIATLPELIVKASRS 116

Query: 147 K-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           K  V++TD+    KF++L   D  Y   +G +AFL IQEGCDKFCTFCVVPYTRG E SR
Sbjct: 117 KGHVINTDFPEVAKFDKLP--DECYGNSQGSSAFLAIQEGCDKFCTFCVVPYTRGAEYSR 174

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            ++++  EA KL+ NG  EI LLGQNVNA+ G+  +GE      L+  +++I+ L R+RY
Sbjct: 175 PVNEIFREALKLVANGANEINLLGQNVNAYHGE-CEGEVWDLGKLISHIAKIEKLERIRY 233

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
           TTSHPRDM + L  AH +   LMP++HLPVQSGS++IL +MNR+HTA EY +IIDR R +
Sbjct: 234 TTSHPRDMHESLYLAHAEEPKLMPFVHLPVQSGSNKILHAMNRKHTAEEYLEIIDRFRKL 293

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
           +P+I  SSDFIVGFPGET+ DF  TM LV+K+ YAQA+SFKYSPR GTPG+   +QV E 
Sbjct: 294 KPEIEFSSDFIVGFPGETEKDFEETMKLVEKVRYAQAYSFKYSPRPGTPGAERKDQVPEE 353

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKGKLVGRSPWLQSVVLNSKN 444
           VK ERLL LQK + +QQ+ FN + VG+ I VL  +K GK + +++G+SP++QSV ++   
Sbjct: 354 VKTERLLRLQKLISKQQLEFNQSMVGKTIPVLFSDKKGKHQNQIIGKSPYMQSVCIDDSE 413

Query: 445 HNIGD-IIKVRITDVKISTLYG 465
               D I+ V++ + + S+L G
Sbjct: 414 DKYRDKIVNVKVLEARQSSLLG 435


>gi|197106915|ref|YP_002132292.1| 2-methylthioadenine synthetase [Phenylobacterium zucineum HLK1]
 gi|229890591|sp|B4RC70|MIAB_PHEZH RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|196480335|gb|ACG79863.1| 2-methylthioadenine synthetase [Phenylobacterium zucineum HLK1]
          Length = 450

 Score =  470 bits (1210), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 245/445 (55%), Positives = 317/445 (71%), Gaps = 9/445 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +R ++K+YGCQMNVYDS RM D+    GY   +    ADL+VLNTCHIREKA EKVYS L
Sbjct: 8   KRLYIKTYGCQMNVYDSERMADVLAPLGYGVTDDPAAADLVVLNTCHIREKATEKVYSEL 67

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           G+I+ LK +R  EG  + + VAGCVAQAEGEEI+RR P V++VVGPQ Y++LPEL+ RA 
Sbjct: 68  GQIKRLKEARRAEGQGMTIAVAGCVAQAEGEEIMRRQPAVDLVVGPQAYHQLPELIARAH 127

Query: 145 F--GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
              G+R+   D++ ++KF+ L+       R  GVTAFLT+QEGCDKFCTFCVVPYTRG E
Sbjct: 128 RARGERLA-ADFAPDEKFDALAT----ERRPTGVTAFLTVQEGCDKFCTFCVVPYTRGGE 182

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR    +  EAR L   GV E+TLLGQNVNA+   G +G+    + L+  L++I GL R
Sbjct: 183 WSRPAEAIEAEARALAAKGVREVTLLGQNVNAY--DGANGQGAGLAGLVRRLAKIPGLDR 240

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +RYTTSHPRDM D LI AH ++  LMPYLHLPVQ+GSDRIL++MNR HTA  Y ++I+++
Sbjct: 241 IRYTTSHPRDMDDDLIAAHAEVPELMPYLHLPVQAGSDRILRAMNRAHTAESYLRVIEKV 300

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R  RPDIAIS DFIVGFPGE + DF AT+ LV ++GYA  FSFKYS R GTP + +  QV
Sbjct: 301 RVARPDIAISGDFIVGFPGEREADFEATLQLVREVGYASCFSFKYSRRPGTPAAALPGQV 360

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
            E VK ERL  LQ  L +QQ++FN A  G+++ VL EK G+  G+L+GRSP+LQ+V  ++
Sbjct: 361 AEEVKEERLQRLQALLEQQQLAFNAAQAGRVLPVLFEKTGRHPGQLIGRSPYLQAVHAHA 420

Query: 443 KNHNIGDIIKVRITDVKISTLYGEL 467
            +  IG I+ V++     ++L G L
Sbjct: 421 PDRLIGQIVPVKVESGGRNSLAGVL 445


>gi|190571036|ref|YP_001975394.1| trna-i(6)a37 thiotransferase enzyme [Wolbachia endosymbiont of
           Culex quinquefasciatus Pel]
 gi|229891026|sp|B3CLG9|MIAB_WOLPP RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|190357308|emb|CAQ54737.1| trna-i(6)a37 thiotransferase enzyme [Wolbachia endosymbiont of
           Culex quinquefasciatus Pel]
          Length = 440

 Score =  467 bits (1201), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 231/442 (52%), Positives = 318/442 (71%), Gaps = 11/442 (2%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
            ++K+YGCQMNVYDS+ ME++    G+  V+  + ADL++LNTCHIREKAAEK+YS LGR
Sbjct: 4   LYIKTYGCQMNVYDSILMENIVKPLGFNVVSDAEQADLVILNTCHIREKAAEKLYSELGR 63

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           I + + ++     ++ +VVAGCVAQAEGEE+ RR+P V++VVGPQ+   LPEL+ +A   
Sbjct: 64  IHSSQKNK-----EMTIVVAGCVAQAEGEEVFRRAPFVDIVVGPQSIPALPELIVKASRS 118

Query: 147 K-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           K  V++TD+    KF++L   D  Y   +G +AFL IQEGCDKFCTFCVVPYTRG E SR
Sbjct: 119 KGHVINTDFPEVAKFDKLP--DECYGNSQGSSAFLAIQEGCDKFCTFCVVPYTRGAEYSR 176

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            ++++  EA  L+ NG  EITLLGQNVNA+ G+  +GE      L+  +++I+ L R+RY
Sbjct: 177 PVNEIFREALNLVKNGAKEITLLGQNVNAYHGE-CEGEVWDLGKLISHIAKIEKLERIRY 235

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
           TTSHPRDM + L   H +   LMP++HLPVQSGS++IL +MNR+HTA EY  IIDR+R +
Sbjct: 236 TTSHPRDMHESLYLVHAEESKLMPFVHLPVQSGSNKILHAMNRKHTAEEYLGIIDRLRKL 295

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
           +P+I  SSDFIVGFPGET+ DF  TM LV+K+ YAQA+SFKYSPR GTPG+   +QV E 
Sbjct: 296 KPEIEFSSDFIVGFPGETEKDFEETMKLVEKVKYAQAYSFKYSPRPGTPGAERKDQVPEE 355

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKGKLVGRSPWLQSV-VLNSK 443
           VK ERLL LQ+ + +QQ+ FN + +G+ I VL  +K GK + +++G+SP++QSV V +  
Sbjct: 356 VKTERLLRLQELISKQQLEFNQSMIGKTIPVLFSDKKGKHQNQIIGKSPYMQSVCVDDPD 415

Query: 444 NHNIGDIIKVRITDVKISTLYG 465
           +     I+ VRI + + ++L G
Sbjct: 416 DKYKDKIVNVRILEARQNSLLG 437


>gi|294676663|ref|YP_003577278.1| MiaB family RNA modification enzyme [Rhodobacter capsulatus SB
           1003]
 gi|294475483|gb|ADE84871.1| RNA modification enzyme, MiaB family [Rhodobacter capsulatus SB
           1003]
          Length = 439

 Score =  465 bits (1196), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 234/450 (52%), Positives = 312/450 (69%), Gaps = 18/450 (4%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
            P++  +K+YGCQMNVYDS RM +    QGY   +   +AD+++LNTCHIREKAAEKVYS
Sbjct: 4   APKKLHIKTYGCQMNVYDSERMAEAMGVQGYTLTDDPAEADMVLLNTCHIREKAAEKVYS 63

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            LGR+R  K ++      L + VAGCVAQAEG EI+RR P+V++VVG Q Y+RLPE++  
Sbjct: 64  DLGRLRPFKEAKP----GLTIGVAGCVAQAEGAEIMRRMPLVDLVVGSQNYHRLPEMVAA 119

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGV----TAFLTIQEGCDKFCTFCVVPYT 198
              G+R VDT++  EDKFERL         +R V    TAFLT+QEGCDKFC FCVVPYT
Sbjct: 120 VGRGERPVDTEFPAEDKFERLP--------ERPVQARPTAFLTVQEGCDKFCAFCVVPYT 171

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258
           RG EISR +++++ EA KL+  GV EITLLGQNVN + G G DG       L+ +L+ I 
Sbjct: 172 RGAEISRPVARILTEAEKLVAKGVREITLLGQNVNGYHGDGPDG-SWGLGRLVRALARID 230

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           GL R+RYTTSHP DM++ LI AHGD   LMPYLHLPVQSGSD ILK+MNR+HTA +Y ++
Sbjct: 231 GLDRIRYTTSHPNDMAEDLIAAHGDEPKLMPYLHLPVQSGSDPILKAMNRKHTAEDYLRL 290

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           ++R+R+ RPD+ +SSDFIVGFPGET+ D +A++DL+  +G+  AFSFKYSPR GTP ++ 
Sbjct: 291 VERLRAARPDLVLSSDFIVGFPGETEADHQASLDLIRAVGFGAAFSFKYSPRPGTPAASR 350

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSV 438
              V   V   RL  LQ  +  QQ +   + VG+ + VL EK G+  G+ VG+S +L +V
Sbjct: 351 TP-VAAEVADARLQELQALITAQQKATQLSMVGRKVGVLFEKPGRLPGQWVGKSDYLHAV 409

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            + ++    G + +VRIT    ++L GE++
Sbjct: 410 HVTAEGIGPGTLAQVRITASAPNSLAGEVL 439


>gi|260574833|ref|ZP_05842835.1| RNA modification enzyme, MiaB family [Rhodobacter sp. SW2]
 gi|259022838|gb|EEW26132.1| RNA modification enzyme, MiaB family [Rhodobacter sp. SW2]
          Length = 440

 Score =  464 bits (1195), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 232/442 (52%), Positives = 307/442 (69%), Gaps = 10/442 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F+K+YGCQMNVYDS RM +     GY     ++DAD++++NTCHIREKA+EK++S L
Sbjct: 5   KKLFIKTYGCQMNVYDSERMVEALGVDGYVTTEVVEDADMVLINTCHIREKASEKLFSDL 64

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR++ LK +R     DL + VAGCVAQAEG EILRR P+V++VVGPQ+Y+RLP +   A 
Sbjct: 65  GRLKPLKVAR----PDLKIGVAGCVAQAEGAEILRRMPLVDLVVGPQSYHRLPAMARAAG 120

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G + +DTD+  EDKF+ L         +RG  AFLT+QEGCDKFC FCVVPYTRG E+S
Sbjct: 121 QGAQAIDTDFPAEDKFDHLP----QRKAQRGPAAFLTVQEGCDKFCAFCVVPYTRGAEVS 176

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R +S+++ EAR L+  GV E+TLLGQNVNA+     D      + LL  +++I GLVRLR
Sbjct: 177 RPVSRLLAEARDLVGRGVREVTLLGQNVNAYHHVD-DAGTWGLARLLREMAQIDGLVRLR 235

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           Y TSHP DM D LI AHGDL  L PYLHLPVQSGSDRIL++MNR+HTA +Y  ++ R+R+
Sbjct: 236 YMTSHPNDMEDDLIAAHGDLPALAPYLHLPVQSGSDRILRAMNRKHTAAQYLALVARVRA 295

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
            RPDI ++SDFIVGFPGET+ DF AT+ L+  + +  A+SFKYS R GTP +   E VD 
Sbjct: 296 ARPDILLTSDFIVGFPGETEADFEATLALIRAVNFGMAYSFKYSARPGTPAAEKPE-VDP 354

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
            V   RL  LQ  L  QQ +  +A VG+ + VL EK G+  G++VG+S  L +V +    
Sbjct: 355 AVADARLQRLQALLTAQQRAAQEAMVGREVSVLYEKKGRLPGQMVGKSDHLHAVHVTDPQ 414

Query: 445 HNIGDIIKVRITDVKISTLYGE 466
             +GD+++VRIT    ++L GE
Sbjct: 415 GAVGDLVRVRITAASSNSLAGE 436


>gi|58584621|ref|YP_198194.1| 2-methylthioadenine synthetase [Wolbachia endosymbiont strain TRS
           of Brugia malayi]
 gi|58418937|gb|AAW70952.1| 2-methylthioadenine synthetase [Wolbachia endosymbiont strain TRS
           of Brugia malayi]
          Length = 448

 Score =  464 bits (1194), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 230/444 (51%), Positives = 318/444 (71%), Gaps = 11/444 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +  ++K+YGCQMNVYDS+ ME++    G+  VN ++ ADL++LNTCHIREKAAEK+YS L
Sbjct: 8   KSLYIKTYGCQMNVYDSILMENIIKPLGFNVVNDVEKADLVILNTCHIREKAAEKLYSEL 67

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           G+I + + ++     ++ +V AGCVAQAEGEEI RR+P V++VVGPQ+   LPEL+ +A 
Sbjct: 68  GKIHSSRKNK-----EITIVAAGCVAQAEGEEIFRRAPFVDIVVGPQSITTLPELIVKAS 122

Query: 145 FGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             K  V++TD+    KF+RLS  D  Y   +G +AFL+IQEGCDKFCTFCVVPYTRG E 
Sbjct: 123 RSKGHVINTDFPKVMKFDRLS--DECYGNSQGSSAFLSIQEGCDKFCTFCVVPYTRGAEY 180

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR ++++  EA KL+ NG  EI LLGQNVNA+ G+  +GE      L+  +++I+ L R+
Sbjct: 181 SRPVNEIFREALKLVANGAKEINLLGQNVNAYHGE-YEGEVWDLGKLISHIAKIEKLERI 239

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           RYTTSHPRDM + L  AH +   LMP++HLPVQSGS++IL++MNR++T  EY +II+R R
Sbjct: 240 RYTTSHPRDMHESLYLAHAEAPKLMPFIHLPVQSGSNKILRAMNRKYTTEEYLEIIERFR 299

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
            ++P I  SSDFIVGFPGET+ DF  T+ LV+++ YAQA+SFKYS R GTPG+   +QV 
Sbjct: 300 KLKPKIEFSSDFIVGFPGETEKDFEGTIKLVERVRYAQAYSFKYSTRPGTPGAERKDQVP 359

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKGKLVGRSPWLQSVVLNS 442
           E VK ERLL LQK + +QQ+ FN + VG+ I VL   K GK + +++G+SP++QSV ++ 
Sbjct: 360 EKVKTERLLHLQKLINKQQLEFNQSMVGKTIPVLFSNKKGKHQNQIIGKSPYMQSVCIDD 419

Query: 443 KNHNIGD-IIKVRITDVKISTLYG 465
                 D I+ VRI +   ++L G
Sbjct: 420 PEDKCRDKIVNVRILEAWQNSLLG 443


>gi|229891227|sp|Q5GSS2|MIAB_WOLTR RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
          Length = 442

 Score =  464 bits (1194), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 230/444 (51%), Positives = 318/444 (71%), Gaps = 11/444 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +  ++K+YGCQMNVYDS+ ME++    G+  VN ++ ADL++LNTCHIREKAAEK+YS L
Sbjct: 2   KSLYIKTYGCQMNVYDSILMENIIKPLGFNVVNDVEKADLVILNTCHIREKAAEKLYSEL 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           G+I + + ++     ++ +V AGCVAQAEGEEI RR+P V++VVGPQ+   LPEL+ +A 
Sbjct: 62  GKIHSSRKNK-----EITIVAAGCVAQAEGEEIFRRAPFVDIVVGPQSITTLPELIVKAS 116

Query: 145 FGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             K  V++TD+    KF+RLS  D  Y   +G +AFL+IQEGCDKFCTFCVVPYTRG E 
Sbjct: 117 RSKGHVINTDFPKVMKFDRLS--DECYGNSQGSSAFLSIQEGCDKFCTFCVVPYTRGAEY 174

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR ++++  EA KL+ NG  EI LLGQNVNA+ G+  +GE      L+  +++I+ L R+
Sbjct: 175 SRPVNEIFREALKLVANGAKEINLLGQNVNAYHGE-YEGEVWDLGKLISHIAKIEKLERI 233

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           RYTTSHPRDM + L  AH +   LMP++HLPVQSGS++IL++MNR++T  EY +II+R R
Sbjct: 234 RYTTSHPRDMHESLYLAHAEAPKLMPFIHLPVQSGSNKILRAMNRKYTTEEYLEIIERFR 293

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
            ++P I  SSDFIVGFPGET+ DF  T+ LV+++ YAQA+SFKYS R GTPG+   +QV 
Sbjct: 294 KLKPKIEFSSDFIVGFPGETEKDFEGTIKLVERVRYAQAYSFKYSTRPGTPGAERKDQVP 353

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKGKLVGRSPWLQSVVLNS 442
           E VK ERLL LQK + +QQ+ FN + VG+ I VL   K GK + +++G+SP++QSV ++ 
Sbjct: 354 EKVKTERLLHLQKLINKQQLEFNQSMVGKTIPVLFSNKKGKHQNQIIGKSPYMQSVCIDD 413

Query: 443 KNHNIGD-IIKVRITDVKISTLYG 465
                 D I+ VRI +   ++L G
Sbjct: 414 PEDKCRDKIVNVRILEAWQNSLLG 437


>gi|68171116|ref|ZP_00544525.1| Protein of unknown function UPF0004:tRNA-i(6)A37 modification
           enzyme MiaB [Ehrlichia chaffeensis str. Sapulpa]
 gi|67999441|gb|EAM86081.1| Protein of unknown function UPF0004:tRNA-i(6)A37 modification
           enzyme MiaB [Ehrlichia chaffeensis str. Sapulpa]
          Length = 442

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 224/448 (50%), Positives = 318/448 (70%), Gaps = 12/448 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           Q  ++KSYGCQMNVYDSL ME++    G+  VN   +A++++LNTCHIREKA+EK+YS L
Sbjct: 2   QGLYIKSYGCQMNVYDSLIMENIIKPLGFTVVNEPSEANIVILNTCHIREKASEKLYSEL 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           G++R     +I+E  DL +VVAGCVAQAEGE+I  R+P V++VVGPQ+ + LPEL+ +AR
Sbjct: 62  GKMR-----KIQETKDLTIVVAGCVAQAEGEQIFARAPFVDIVVGPQSIHTLPELIIKAR 116

Query: 145 -FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
              K+V++ D+ +  KF+ + + +  Y + + V+AF+++QEGC+KFCTFCVVPYTRG E 
Sbjct: 117 RMKKQVINIDFPIISKFDAIPVEE--YTKNQEVSAFISVQEGCNKFCTFCVVPYTRGEEY 174

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR++  + +EA  L D+GV EITL+GQNVNA+ G    G +     L+  L++I  + R+
Sbjct: 175 SRTVEAIFNEALVLSDSGVKEITLIGQNVNAYHGT-YKGCEWDLGKLIQYLAKIPNIERI 233

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           RYTTSHPRDM   L +AH     LMP++HLP+QSGSDRILK MNR+HTA EY  II+ +R
Sbjct: 234 RYTTSHPRDMHQSLYEAHRSETKLMPFVHLPIQSGSDRILKKMNRKHTAEEYIDIINNLR 293

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
             RPDIA SSDFIVGFPGET++DF  TM LV ++ ++QA+SFKYSPR GTP +    Q+ 
Sbjct: 294 KQRPDIAFSSDFIVGFPGETEEDFEHTMKLVQEVNFSQAYSFKYSPRPGTPSAEYPNQIP 353

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKGKLVGRSPWLQSVVLNS 442
           E +K++R+  LQ+ LREQQ++FN   +GQ   VL   K GK   +++G++ ++QS  +N+
Sbjct: 354 EEIKSQRIFRLQELLREQQLAFNRNMIGQTCSVLFNNKKGKFDNQIIGKTEYMQSCYINT 413

Query: 443 KNHN--IGDIIKVRITDVKISTLYGELV 468
            N N     I+ ++I D   +++ G +V
Sbjct: 414 DNPNQFYNSILPIKIIDAYQNSVTGIVV 441


>gi|88658201|ref|YP_507633.1| tRNA-i(6)A37 modification enzyme MiaB [Ehrlichia chaffeensis str.
           Arkansas]
 gi|123763750|sp|Q2GG00|MIAB_EHRCR RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|88599658|gb|ABD45127.1| tRNA-i(6)A37 modification enzyme MiaB [Ehrlichia chaffeensis str.
           Arkansas]
          Length = 442

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 224/448 (50%), Positives = 318/448 (70%), Gaps = 12/448 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           Q  ++KSYGCQMNVYDSL ME++    G+  VN   +A++++LNTCHIREKA+EK+YS L
Sbjct: 2   QGLYIKSYGCQMNVYDSLIMENIIKPLGFTVVNEPSEANIVILNTCHIREKASEKLYSEL 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           G++R     +I+E  DL +VVAGCVAQAEGE+I  R+P V++VVGPQ+ + LPEL+ +AR
Sbjct: 62  GKMR-----KIQETKDLTIVVAGCVAQAEGEQIFARAPFVDIVVGPQSIHTLPELIIKAR 116

Query: 145 -FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
              K+V++ D+ +  KF+ + + +  Y + + V+AF+++QEGC+KFCTFCVVPYTRG E 
Sbjct: 117 RMKKQVINIDFPIISKFDAIPVEE--YTKNQEVSAFISVQEGCNKFCTFCVVPYTRGEEY 174

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR++  + +EA  L D+GV EITL+GQNVNA+ G    G +     L+  L++I  + R+
Sbjct: 175 SRTVEAIFNEALVLSDSGVKEITLIGQNVNAYHGT-YKGCEWDLGKLIQYLAKIPNIERI 233

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           RYTTSHPRDM   L +AH     LMP++HLP+QSGSDRILK MNR+HTA EY  II+ +R
Sbjct: 234 RYTTSHPRDMHQSLYEAHRSETKLMPFVHLPIQSGSDRILKKMNRKHTAEEYIDIINNLR 293

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
             RPDIA SSDFIVGFPGET++DF  TM LV ++ ++QA+SFKYSPR GTP +    Q+ 
Sbjct: 294 KQRPDIAFSSDFIVGFPGETEEDFEHTMKLVQEVNFSQAYSFKYSPRPGTPSAEYPNQIP 353

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKGKLVGRSPWLQSVVLNS 442
           E +K++R+  LQ+ LREQQ++FN   +GQ   VL   K GK   +++G++ ++QS  +N+
Sbjct: 354 EEIKSQRIFRLQELLREQQLAFNRNMIGQTCSVLFNNKKGKFDNQIIGKTEYMQSCYINT 413

Query: 443 KNHN--IGDIIKVRITDVKISTLYGELV 468
            N N     I+ ++I D   +++ G +V
Sbjct: 414 DNTNQFYNSILPIKIIDAYQNSVTGIVV 441


>gi|58698340|ref|ZP_00373255.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Wolbachia endosymbiont of
           Drosophila ananassae]
 gi|58535130|gb|EAL59214.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Wolbachia endosymbiont of
           Drosophila ananassae]
          Length = 427

 Score =  455 bits (1171), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 228/433 (52%), Positives = 309/433 (71%), Gaps = 13/433 (3%)

Query: 36  MNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRI 95
           MNVYDS+ ME++    G+  V+    ADL++LNTCHIREKAAEK+YS LG+I +L+    
Sbjct: 1   MNVYDSVLMENVIKPLGFNVVSDAGKADLVILNTCHIREKAAEKLYSELGKIHSLRK--- 57

Query: 96  KEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK-RVVDTDY 154
               ++ +VVAGCVAQAEGEE+ RR+P V++VVGPQ+   LPEL+ +A   K  V++TD+
Sbjct: 58  ----EMTIVVAGCVAQAEGEEVFRRAPFVDIVVGPQSIATLPELIVKASRSKGHVINTDF 113

Query: 155 SVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEA 214
               KF++L   D  Y   +G +AFL IQEGCDKFCTFCVVPYTRG E SR ++++  EA
Sbjct: 114 PEVAKFDKLP--DECYGNSQGSSAFLAIQEGCDKFCTFCVVPYTRGAEYSRPVNEIFREA 171

Query: 215 RKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMS 274
            KL+ NG  EI LLGQNVNA+ G+  +GE      L+  +++I+ L R+RYTTSHPRDM 
Sbjct: 172 LKLVANGANEINLLGQNVNAYHGE-CEGEVWDLGKLISHIAKIEKLERIRYTTSHPRDMH 230

Query: 275 DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSD 334
           + L  AH +   LMP++HLPVQSGS++IL +MNR+HTA EY +IIDR R ++P+I  SSD
Sbjct: 231 ESLYLAHAEEPKLMPFVHLPVQSGSNKILHAMNRKHTAEEYLEIIDRFRKLKPEIEFSSD 290

Query: 335 FIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCL 394
           FIVGFPGET+ DF  TM LV+K+ YAQA+SFKYSPR GTPG+   +QV E VK ERLL L
Sbjct: 291 FIVGFPGETEKDFEETMKLVEKVRYAQAYSFKYSPRPGTPGAERKDQVPEEVKTERLLRL 350

Query: 395 QKKLREQQVSFNDACVGQIIEVLI-EKHGKEKGKLVGRSPWLQSVVLNSKNHNIGD-IIK 452
           QK + +QQ+ FN + VG+ I VL  +K GK + +++G+SP++QSV ++       D I+ 
Sbjct: 351 QKLISKQQLEFNQSMVGKTIPVLFSDKKGKHQNQIIGKSPYMQSVCIDDSEDKYRDKIVN 410

Query: 453 VRITDVKISTLYG 465
           V++ + + S+L G
Sbjct: 411 VKVLEARQSSLLG 423


>gi|58616989|ref|YP_196188.1| hypothetical protein ERGA_CDS_02620 [Ehrlichia ruminantium str.
           Gardel]
 gi|58416601|emb|CAI27714.1| Conserved hypothetical protein [Ehrlichia ruminantium str. Gardel]
          Length = 450

 Score =  453 bits (1165), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 215/444 (48%), Positives = 317/444 (71%), Gaps = 11/444 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           Q  ++KSYGCQMNVYDSL +E++    G+  VN + +AD+++LNTCHIREKAAEK+YS L
Sbjct: 7   QGLYIKSYGCQMNVYDSLIIENIIKPLGFSIVNELSEADIVILNTCHIREKAAEKLYSEL 66

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GRIR     +I+E  +L +VVAGCVAQAEG EI  R+P V++VVGPQ+ + LPEL+ +AR
Sbjct: 67  GRIR-----KIQETKNLTIVVAGCVAQAEGTEIFTRAPFVDIVVGPQSIHTLPELIVKAR 121

Query: 145 -FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
              K++++ D+ V  KF+ +++ +  Y + + V+AF+++QEGC+KFC+FCVVPYTRG E 
Sbjct: 122 KIKKQIINIDFPVISKFDAIAVEE--YTKNQKVSAFISVQEGCNKFCSFCVVPYTRGEEY 179

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR++  +  EA  L D+G+ EITL+GQNVNA+ G    G +     L+  +++I  + R+
Sbjct: 180 SRTVEAIFKEALILADSGIKEITLIGQNVNAYHGT-YKGNEWDLGRLIQHIAKISSIERI 238

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
            YTTSHPRDM + L +AHG    L+P++HLPVQSGS++IL+ MNR+HTA EY  II  +R
Sbjct: 239 YYTTSHPRDMHESLYEAHGIEKKLIPFIHLPVQSGSNKILRKMNRKHTAEEYINIIKTLR 298

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
             R DIA SSDFIVGFPGETD+DF  T+ L++++ ++QA+SFKYSPR GTP +    Q+ 
Sbjct: 299 KHRSDIAYSSDFIVGFPGETDEDFENTIRLIEEVKFSQAYSFKYSPRPGTPSAEYTSQIP 358

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
           + +K++RL  LQ+ + +QQ+ FN   +G+   VL  K GK   +++G++P++QS  +N++
Sbjct: 359 DEIKSQRLTKLQELVHKQQLEFNKKMIGETHPVLFYKKGKFDNQIIGKTPYMQSCYINTE 418

Query: 444 NHNI--GDIIKVRITDVKISTLYG 465
           N ++    I+ ++ITD   + L G
Sbjct: 419 NPDLYYNKIVPIKITDAHKNHLTG 442


>gi|229890687|sp|Q5FHD1|MIAB_EHRRG RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
          Length = 445

 Score =  452 bits (1164), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 215/444 (48%), Positives = 317/444 (71%), Gaps = 11/444 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           Q  ++KSYGCQMNVYDSL +E++    G+  VN + +AD+++LNTCHIREKAAEK+YS L
Sbjct: 2   QGLYIKSYGCQMNVYDSLIIENIIKPLGFSIVNELSEADIVILNTCHIREKAAEKLYSEL 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GRIR     +I+E  +L +VVAGCVAQAEG EI  R+P V++VVGPQ+ + LPEL+ +AR
Sbjct: 62  GRIR-----KIQETKNLTIVVAGCVAQAEGTEIFTRAPFVDIVVGPQSIHTLPELIVKAR 116

Query: 145 -FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
              K++++ D+ V  KF+ +++ +  Y + + V+AF+++QEGC+KFC+FCVVPYTRG E 
Sbjct: 117 KIKKQIINIDFPVISKFDAIAVEE--YTKNQKVSAFISVQEGCNKFCSFCVVPYTRGEEY 174

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR++  +  EA  L D+G+ EITL+GQNVNA+ G    G +     L+  +++I  + R+
Sbjct: 175 SRTVEAIFKEALILADSGIKEITLIGQNVNAYHGT-YKGNEWDLGRLIQHIAKISSIERI 233

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
            YTTSHPRDM + L +AHG    L+P++HLPVQSGS++IL+ MNR+HTA EY  II  +R
Sbjct: 234 YYTTSHPRDMHESLYEAHGIEKKLIPFIHLPVQSGSNKILRKMNRKHTAEEYINIIKTLR 293

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
             R DIA SSDFIVGFPGETD+DF  T+ L++++ ++QA+SFKYSPR GTP +    Q+ 
Sbjct: 294 KHRSDIAYSSDFIVGFPGETDEDFENTIRLIEEVKFSQAYSFKYSPRPGTPSAEYTSQIP 353

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
           + +K++RL  LQ+ + +QQ+ FN   +G+   VL  K GK   +++G++P++QS  +N++
Sbjct: 354 DEIKSQRLTKLQELVHKQQLEFNKKMIGETHPVLFYKKGKFDNQIIGKTPYMQSCYINTE 413

Query: 444 NHNI--GDIIKVRITDVKISTLYG 465
           N ++    I+ ++ITD   + L G
Sbjct: 414 NPDLYYNKIVPIKITDAHKNHLTG 437


>gi|304320422|ref|YP_003854065.1| hypothetical protein PB2503_04242 [Parvularcula bermudensis
           HTCC2503]
 gi|303299324|gb|ADM08923.1| hypothetical protein PB2503_04242 [Parvularcula bermudensis
           HTCC2503]
          Length = 431

 Score =  452 bits (1164), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 233/432 (53%), Positives = 294/432 (68%), Gaps = 14/432 (3%)

Query: 36  MNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRI 95
           MNVYDS RM  +    GY    + D+ADL++LNTCHIREKAAEKVYS LGR+  +K    
Sbjct: 1   MNVYDSERMTGLLRPLGYSPTANPDEADLVILNTCHIREKAAEKVYSELGRLTEVK---- 56

Query: 96  KEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER-ARFGKRVVDTDY 154
             GG   + VAGCVAQAEG+EI  R+P V++V GPQ+Y+ LPEL+ + AR     ++TD+
Sbjct: 57  ARGGK--IAVAGCVAQAEGKEIKARAPQVDLVFGPQSYHHLPELIAKSAREAGLALETDF 114

Query: 155 SVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEA 214
           +  +KF+ L+  +G   +  G  AF+TIQEGCDKFCTFCVVPYTRG E+SR    +  E 
Sbjct: 115 AAVEKFDALA--EG--RQADGYAAFVTIQEGCDKFCTFCVVPYTRGAEVSRGTDAIAAEV 170

Query: 215 RKLIDNGVCEITLLGQNVNAWRGKGLDG---EKCTFSDLLYSLSEIKGLVRLRYTTSHPR 271
           R L   GV EITLLGQNVNAWRG    G   +      L   L++I G+ R+R+TTSHP 
Sbjct: 171 RDLAAQGVVEITLLGQNVNAWRGAAPAGATQDSLGLGGLCRHLAQIDGIERIRFTTSHPA 230

Query: 272 DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAI 331
           DM D LI A  D   LMPYLHLPVQSG+DRILK+MNRRHTA  Y ++I+RIR  RPDIAI
Sbjct: 231 DMDDELIAAFADEPKLMPYLHLPVQSGADRILKAMNRRHTADTYIRMIERIRQARPDIAI 290

Query: 332 SSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERL 391
           S D IVGFPGE +  F  T+ LV+ + YA  FSFKYS R GTPG+ + +QV E++KAERL
Sbjct: 291 SGDMIVGFPGEDEGAFEETLALVEAVEYASCFSFKYSRRPGTPGATLPKQVAEDIKAERL 350

Query: 392 LCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDII 451
             LQ  L  Q+  FN   VG+I+ VL EK G+E G+LVGRSP+LQ+V     +H +G I+
Sbjct: 351 QRLQALLERQKQHFNAQQVGKILPVLFEKPGREAGQLVGRSPYLQAVFAPLPDHALGQIV 410

Query: 452 KVRITDVKISTL 463
            VRI   + ++L
Sbjct: 411 PVRILSTRPNSL 422


>gi|57238993|ref|YP_180129.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Ehrlichia
           ruminantium str. Welgevonden]
 gi|81637928|sp|Q5HBR5|MIAB_EHRRW RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|57161072|emb|CAH57979.1| conserved hypothetical protein [Ehrlichia ruminantium str.
           Welgevonden]
          Length = 445

 Score =  452 bits (1163), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 215/444 (48%), Positives = 316/444 (71%), Gaps = 11/444 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           Q  ++KSYGCQMNVYDSL +E++    G+  VN   +AD+++LNTCHIREKAAEK+YS L
Sbjct: 2   QGLYIKSYGCQMNVYDSLIIENIIKPLGFSIVNEPSEADIVILNTCHIREKAAEKLYSEL 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GRIR     +I+E  +L +VVAGCVAQAEG EI  R+P V++VVGPQ+ + LPEL+ +AR
Sbjct: 62  GRIR-----KIQETKNLTIVVAGCVAQAEGTEIFTRAPFVDIVVGPQSIHTLPELIVKAR 116

Query: 145 -FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
              K++++ D+ V  KF+ +++ +  Y + + V+AF+++QEGC+KFC+FCVVPYTRG E 
Sbjct: 117 KIKKQIINIDFPVISKFDAIAVEE--YTKNQKVSAFISVQEGCNKFCSFCVVPYTRGEEY 174

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR++  +  EA  L D+G+ EITL+GQNVNA+ G    G +     L+  +++I  + R+
Sbjct: 175 SRTVEAIFKEALILADSGIKEITLIGQNVNAYHGT-YKGNEWDLGRLIQHIAKISSIERI 233

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
            YTTSHPRDM + L +AHG    L+P++HLPVQSGS++IL+ MNR+HTA EY  II  +R
Sbjct: 234 YYTTSHPRDMHESLYEAHGIEKKLIPFIHLPVQSGSNKILRKMNRKHTAEEYINIIKTLR 293

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
             R DIA SSDFIVGFPGETD+DF  T+ L++++ ++QA+SFKYSPR GTP +    Q+ 
Sbjct: 294 KHRSDIAYSSDFIVGFPGETDEDFENTIQLIEEVKFSQAYSFKYSPRPGTPSAEYTSQIP 353

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
           + +K++RL  LQ+ + +QQ+ FN   +G+   VL  K GK   +++G++P++QS  +N++
Sbjct: 354 DEIKSQRLTKLQELVHKQQLEFNKKMIGETHPVLFYKKGKFDNQIIGKTPYMQSCYINTE 413

Query: 444 NHNI--GDIIKVRITDVKISTLYG 465
           N ++    I+ ++ITD   + L G
Sbjct: 414 NPDLYYNKIVPIKITDAHKNHLTG 437


>gi|58578929|ref|YP_197141.1| hypothetical protein ERWE_CDS_02650 [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58417555|emb|CAI26759.1| Conserved hypothetical protein [Ehrlichia ruminantium str.
           Welgevonden]
          Length = 450

 Score =  452 bits (1162), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 215/444 (48%), Positives = 316/444 (71%), Gaps = 11/444 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           Q  ++KSYGCQMNVYDSL +E++    G+  VN   +AD+++LNTCHIREKAAEK+YS L
Sbjct: 7   QGLYIKSYGCQMNVYDSLIIENIIKPLGFSIVNEPSEADIVILNTCHIREKAAEKLYSEL 66

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GRIR     +I+E  +L +VVAGCVAQAEG EI  R+P V++VVGPQ+ + LPEL+ +AR
Sbjct: 67  GRIR-----KIQETKNLTIVVAGCVAQAEGTEIFTRAPFVDIVVGPQSIHTLPELIVKAR 121

Query: 145 -FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
              K++++ D+ V  KF+ +++ +  Y + + V+AF+++QEGC+KFC+FCVVPYTRG E 
Sbjct: 122 KIKKQIINIDFPVISKFDAIAVEE--YTKNQKVSAFISVQEGCNKFCSFCVVPYTRGEEY 179

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR++  +  EA  L D+G+ EITL+GQNVNA+ G    G +     L+  +++I  + R+
Sbjct: 180 SRTVEAIFKEALILADSGIKEITLIGQNVNAYHGT-YKGNEWDLGRLIQHIAKISSIERI 238

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
            YTTSHPRDM + L +AHG    L+P++HLPVQSGS++IL+ MNR+HTA EY  II  +R
Sbjct: 239 YYTTSHPRDMHESLYEAHGIEKKLIPFIHLPVQSGSNKILRKMNRKHTAEEYINIIKTLR 298

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
             R DIA SSDFIVGFPGETD+DF  T+ L++++ ++QA+SFKYSPR GTP +    Q+ 
Sbjct: 299 KHRSDIAYSSDFIVGFPGETDEDFENTIQLIEEVKFSQAYSFKYSPRPGTPSAEYTSQIP 358

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
           + +K++RL  LQ+ + +QQ+ FN   +G+   VL  K GK   +++G++P++QS  +N++
Sbjct: 359 DEIKSQRLTKLQELVHKQQLEFNKKMIGETHPVLFYKKGKFDNQIIGKTPYMQSCYINTE 418

Query: 444 NHNI--GDIIKVRITDVKISTLYG 465
           N ++    I+ ++ITD   + L G
Sbjct: 419 NPDLYYNKIVPIKITDAHKNHLTG 442


>gi|213019557|ref|ZP_03335363.1| trna-i(6)a37 thiotransferase enzyme [Wolbachia endosymbiont of
           Culex quinquefasciatus JHB]
 gi|212994979|gb|EEB55621.1| trna-i(6)a37 thiotransferase enzyme [Wolbachia endosymbiont of
           Culex quinquefasciatus JHB]
          Length = 428

 Score =  452 bits (1162), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 226/433 (52%), Positives = 310/433 (71%), Gaps = 11/433 (2%)

Query: 36  MNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRI 95
           MNVYDS+ ME++    G+  V+  + ADL++LNTCHIREKAAEK+YS LGRI + + ++ 
Sbjct: 1   MNVYDSILMENIVKPLGFNVVSDAEQADLVILNTCHIREKAAEKLYSELGRIHSSQKNK- 59

Query: 96  KEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK-RVVDTDY 154
               ++ +VVAGCVAQAEGEE+ RR+P V++VVGPQ+   LPEL+ +A   K  V++TD+
Sbjct: 60  ----EMTIVVAGCVAQAEGEEVFRRAPFVDIVVGPQSIPALPELIVKASRSKGHVINTDF 115

Query: 155 SVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEA 214
               KF++L   D  Y   +G +AFL IQEGCDKFCTFCVVPYTRG E SR ++++  EA
Sbjct: 116 PEVAKFDKLP--DECYGNSQGSSAFLAIQEGCDKFCTFCVVPYTRGAEYSRPVNEIFREA 173

Query: 215 RKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMS 274
             L+ NG  EITLLGQNVNA+ G+  +GE      L+  +++I+ L R+RYTTSHPRDM 
Sbjct: 174 LNLVKNGAKEITLLGQNVNAYHGE-CEGEVWDLGKLISHIAKIEKLERIRYTTSHPRDMH 232

Query: 275 DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSD 334
           + L   H +   LMP++HLPVQSGS++IL +MNR+HTA EY  IIDR+R ++P+I  SSD
Sbjct: 233 ESLYLVHAEESKLMPFVHLPVQSGSNKILHAMNRKHTAEEYLGIIDRLRKLKPEIEFSSD 292

Query: 335 FIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCL 394
           FIVGFPGET+ DF  TM LV+K+ YAQA+SFKYSPR GTPG+   +QV E VK ERLL L
Sbjct: 293 FIVGFPGETEKDFEETMKLVEKVKYAQAYSFKYSPRPGTPGAERKDQVPEEVKTERLLRL 352

Query: 395 QKKLREQQVSFNDACVGQIIEVLI-EKHGKEKGKLVGRSPWLQSV-VLNSKNHNIGDIIK 452
           Q+ + +QQ+ FN + +G+ I VL  +K GK + +++G+SP++QSV V +  +     I+ 
Sbjct: 353 QELISKQQLEFNQSMIGKTIPVLFSDKKGKHQNQIIGKSPYMQSVCVDDPDDKYKDKIVN 412

Query: 453 VRITDVKISTLYG 465
           VRI + + ++L G
Sbjct: 413 VRILEARQNSLLG 425


>gi|73666881|ref|YP_302897.1| 2-methylthioadenine synthetase [Ehrlichia canis str. Jake]
 gi|123759460|sp|Q3YSK6|MIAB_EHRCJ RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|72394022|gb|AAZ68299.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Ehrlichia canis str.
           Jake]
          Length = 441

 Score =  449 bits (1154), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 230/443 (51%), Positives = 317/443 (71%), Gaps = 12/443 (2%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
            ++KSYGCQMNVYDSL ME++    G+  V+   +AD+++LNTCHIREKA+EK+YS LG+
Sbjct: 4   LYIKSYGCQMNVYDSLIMENIIKPLGFTVVSEPSEADVVILNTCHIREKASEKLYSELGK 63

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA-RF 145
           IR     +I+E  DL +VVAGCVAQAEGEEI  RSP V++VVGPQ+ + LPELL +A R 
Sbjct: 64  IR-----KIQENKDLTIVVAGCVAQAEGEEIFERSPFVDIVVGPQSIHTLPELLVKAHRI 118

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            K+V++ D+ V  KF+ + + +  Y + +  +AF+++QEGC+KFCTFCVVPYTRG E SR
Sbjct: 119 KKQVINIDFPVISKFDAIPVEE--YTKNQETSAFISVQEGCNKFCTFCVVPYTRGEEYSR 176

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           ++  + +EA  L D+G+ EITL+GQNVNA+ G    G +     L+  +++I  + R+RY
Sbjct: 177 TVEAIFNEALVLADSGIKEITLIGQNVNAYHGT-YKGCEWDLGKLIQHIAKIPNIERIRY 235

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
           TTSHPRDM   L +AH   + LMP++HLPVQSGSDRILK MNR+HTA EY  II  +R  
Sbjct: 236 TTSHPRDMHQSLYEAHKLEEKLMPFVHLPVQSGSDRILKKMNRKHTAEEYIDIISHLRKQ 295

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
           RPDIA SSDFIVGFPGET++DF  T+ LV+K+ ++QA+SFKYSPR GTPG+    QV E 
Sbjct: 296 RPDIAFSSDFIVGFPGETEEDFENTIKLVEKVKFSQAYSFKYSPRPGTPGAEYPNQVPEE 355

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKGKLVGRSPWLQSVVLNSKN 444
           +K+ERLL LQK LREQQ++FN + +G+   VL   K GK   +++G++ ++QS  +N+ N
Sbjct: 356 IKSERLLRLQKLLREQQLAFNRSMIGETCTVLFSSKKGKFDNQIIGKTAYMQSCYINTDN 415

Query: 445 HN--IGDIIKVRITDVKISTLYG 465
            +     I  ++I D   ++L G
Sbjct: 416 PSQFYNSISPIKIIDAHQNSLTG 438


>gi|148284092|ref|YP_001248182.1| MiaB-like tRNA modifying enzyme [Orientia tsutsugamushi str.
           Boryong]
 gi|229890582|sp|A5CC78|MIAB_ORITB RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|146739531|emb|CAM79253.1| MiaB-like tRNA modifying enzyme [Orientia tsutsugamushi str.
           Boryong]
          Length = 449

 Score =  443 bits (1140), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 221/446 (49%), Positives = 310/446 (69%), Gaps = 10/446 (2%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
            ++K+YGCQMNVYDS RM D+  +QGY  V +M DA +I+LNTCHIREKA+EK+YS LGR
Sbjct: 5   LYIKTYGCQMNVYDSNRMVDLLETQGYNIVANMADASVIILNTCHIREKASEKMYSELGR 64

Query: 87  IRNLKNSRIKEG-GDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           I+ L+ SR+K G     ++VAGCV QAEGEEI  R P VN++VGPQ+YY LP +LE+   
Sbjct: 65  IKKLQQSRLKAGKSKAKIIVAGCVGQAEGEEIFIREPAVNIIVGPQSYYNLPTMLEKLDS 124

Query: 146 G--KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           G    ++D D+    KF +L  V     +   V+  +++QEGCDKFCTFCVVPYTRG E 
Sbjct: 125 GTENHLIDLDFVEAAKFNKLPEVL----KSPTVSGLVSVQEGCDKFCTFCVVPYTRGAEF 180

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR L QV  E   +   G  E+ L+GQNV+A+ GK  +G++C+ +DL+  +++I  + R+
Sbjct: 181 SRPLEQVYREVLNIAQQGAKEVVLVGQNVSAYHGKDENGKECSLADLIKYVAKIDKIKRI 240

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           RY TSHP DM+D L+  H   + LMP+LHLPVQSGS++ILK MNRRHT   Y +II ++R
Sbjct: 241 RYITSHPNDMTDQLLSLHATEEKLMPFLHLPVQSGSNKILKLMNRRHTRERYLEIIQQLR 300

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
            +RPDI ISSD IVGFPGE D+DF AT+ L  +  + Q +SFKYS R GTP + + +Q+ 
Sbjct: 301 ELRPDIVISSDIIVGFPGEDDEDFEATLSLAKEAKFGQCYSFKYSQRPGTPAA-VKQQIS 359

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSV-VLNS 442
           E VK  RL  LQ +L  QQ+  N   +G+++ VL ++ GK  G+++G++P++QSV ++N 
Sbjct: 360 EEVKQHRLSILQAQLMLQQLECNQKLIGKVVPVLFDRDGKYDGQIIGKTPYMQSVCIMNE 419

Query: 443 KNHNI-GDIIKVRITDVKISTLYGEL 467
           K++N+ G I+ V+I     S+L+GE+
Sbjct: 420 KDNNLYGKIVNVKILSASASSLFGEV 445


>gi|189184684|ref|YP_001938469.1| tRNA-methylthiotransferase MiaB protein [Orientia tsutsugamushi
           str. Ikeda]
 gi|229890583|sp|B3CV38|MIAB_ORITI RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|189181455|dbj|BAG41235.1| tRNA-methylthiotransferase MiaB protein [Orientia tsutsugamushi
           str. Ikeda]
          Length = 449

 Score =  441 bits (1135), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 220/446 (49%), Positives = 311/446 (69%), Gaps = 10/446 (2%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
            ++K+YGCQMNVYDS RM D+  +QGY  V +M DA +I+LNTCHIREKA+EK+YS LGR
Sbjct: 5   LYIKTYGCQMNVYDSNRMVDLLETQGYNIVANMADASVIILNTCHIREKASEKMYSELGR 64

Query: 87  IRNLKNSRIKEG-GDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           I+ L+ SR+K G     ++VAGCV QAEGEEI  R P VN++VGPQ+YY LP +LE+   
Sbjct: 65  IKKLQQSRLKAGKSKAKIIVAGCVGQAEGEEIFIREPAVNIIVGPQSYYNLPTMLEKLDS 124

Query: 146 G--KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           G    ++D D+    KF +L  V     +   V+  +++QEGCDKFCTFCVVPYTRG E 
Sbjct: 125 GTENHLIDLDFVEAAKFNKLPEV----LKSPTVSGLVSVQEGCDKFCTFCVVPYTRGAEF 180

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR L QV  E   +   G  E+ L+GQNV+A+ GK  +G++C+ +DL+  +++I  + R+
Sbjct: 181 SRPLEQVYREVLNIAQQGAKEVVLVGQNVSAYHGKDENGKECSLADLIKYVAKIDKIKRI 240

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           RY TSHP DM+D L+  H   + LMP+LHLPVQSGS++ILK MNRRH+   Y +II ++R
Sbjct: 241 RYITSHPNDMTDQLLSLHATEEKLMPFLHLPVQSGSNKILKLMNRRHSRERYLEIIQQLR 300

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
            +RPDI ISSD IVGFPGE D+DF AT+ L  +  + Q +SFKYS R GTP + + +Q+ 
Sbjct: 301 ELRPDIVISSDIIVGFPGEDDEDFEATLSLAKEARFGQCYSFKYSQRPGTPAA-VKQQIS 359

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSV-VLNS 442
           E VK  RL  LQ +L +QQ+  N   +G+++ VL ++ GK  G+++G++P++QSV ++N 
Sbjct: 360 EEVKQHRLSILQAQLMQQQLECNQKLIGKVVPVLFDRDGKYDGQIIGKTPYMQSVCIMNE 419

Query: 443 KNHNI-GDIIKVRITDVKISTLYGEL 467
           K++N+ G I+ V+I     S+L+GE+
Sbjct: 420 KDNNLYGKIVNVKILTASASSLFGEV 445


>gi|88606847|ref|YP_505456.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Anaplasma phagocytophilum
           HZ]
 gi|123494765|sp|Q2GJJ5|MIAB_ANAPZ RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|88597910|gb|ABD43380.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Anaplasma phagocytophilum
           HZ]
          Length = 444

 Score =  419 bits (1078), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 208/448 (46%), Positives = 307/448 (68%), Gaps = 18/448 (4%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
            +++SYGCQMNVYD+L MED+    GY  V+  +DAD+I++NTCHIREKA+EK+YS LGR
Sbjct: 5   LYIESYGCQMNVYDALMMEDLLRPVGYAAVSRPEDADIILINTCHIREKASEKLYSTLGR 64

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           +R +K        + +++VAGCVAQAEGE +  R+P VNVVVGPQ  + LPEL+ + +  
Sbjct: 65  MRVIKKE------ECILIVAGCVAQAEGEAVFERAPYVNVVVGPQGLHTLPELIMKVKRD 118

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKR--GVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
           K+ ++ ++ V  KF+ +SI     +RK   GV+A+++IQEGCDKFCTFCVVPYTRG E S
Sbjct: 119 KKQINIEFPVVSKFDAISI-----DRKANGGVSAYVSIQEGCDKFCTFCVVPYTRGPEYS 173

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R +  +++E ++L D G  EI L+GQNVNA+ G    G +     L+  +S I G+ R+R
Sbjct: 174 RDVEAILEEVKQLTDRGTKEIVLIGQNVNAYHGT-YKGNEWDLGKLIQKVSLIDGVERIR 232

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           YTTSHPRDM   L +AH D   L P++HLPVQSGSD IL+ MNR+HTA EY +++++++ 
Sbjct: 233 YTTSHPRDMHPSLYEAHRDEKKLAPFVHLPVQSGSDAILRKMNRKHTAEEYLRVVEQLKD 292

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
              ++A+SSDFIVGFPGET+ DF  TM LV+ +G+A ++SFKYSPR GTPG+    QV E
Sbjct: 293 SNKNMALSSDFIVGFPGETEKDFEETMKLVESVGFALSYSFKYSPRPGTPGAEYSNQVPE 352

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKGKLVGRSPWLQSVVLNSK 443
             K+ RL  LQ  L +QQ+ FN +  G++++VL+ +       ++ G+S + QS+ +++ 
Sbjct: 353 EEKSARLAALQGLLTKQQLQFNKSMEGRVMDVLVGDPSSMRSDRIFGKSEYTQSIHISAP 412

Query: 444 NHN---IGDIIKVRITDVKISTLYGELV 468
           + +      +++V I   + ++L G ++
Sbjct: 413 SGSEDCFNRMVRVEILHGRQNSLEGTVL 440


>gi|218659687|ref|ZP_03515617.1| putative 2-methylthioadenine synthetase (miaB-like) protein
           [Rhizobium etli IE4771]
          Length = 277

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 194/276 (70%), Positives = 229/276 (82%)

Query: 66  VLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVN 125
           +LNTCHIREKAAEKVYS LGR+R +K  +  +G ++++ VAGCVAQAEGEEILRR+P V+
Sbjct: 1   LLNTCHIREKAAEKVYSALGRLREMKKKKAADGREMMIGVAGCVAQAEGEEILRRAPAVD 60

Query: 126 VVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEG 185
           VV+GPQTY+RLPE L RA+ G+RVVDT+Y++EDKFE L I +    R RGVTAFLT+QEG
Sbjct: 61  VVIGPQTYHRLPEALRRAKQGQRVVDTEYAIEDKFEHLPIAESRKIRARGVTAFLTVQEG 120

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           CDKFCTFCVVPYTRG E+SR ++Q+V+EA KL + GV EITLLGQNVNAW G G  GE  
Sbjct: 121 CDKFCTFCVVPYTRGSEVSRPVTQIVEEAEKLAEAGVREITLLGQNVNAWHGAGPRGEAW 180

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
           +  DLLY L+EI GL RLRYTTSHPRDM D LI+AH DL  LMPYLHLPVQSGSDRILK+
Sbjct: 181 SLGDLLYRLAEIPGLARLRYTTSHPRDMDDRLIEAHRDLRALMPYLHLPVQSGSDRILKA 240

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPG 341
           MNRRHTA EY  +I+RIR++RPDIA+S DFI GFPG
Sbjct: 241 MNRRHTAAEYLSLIERIRTIRPDIALSGDFITGFPG 276


>gi|88608596|ref|YP_506702.1| tRNA-i(6)A37 modification enzyme MiaB [Neorickettsia sennetsu str.
           Miyayama]
 gi|123763693|sp|Q2GCU4|MIAB_NEOSM RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|88600765|gb|ABD46233.1| tRNA-i(6)A37 modification enzyme MiaB [Neorickettsia sennetsu str.
           Miyayama]
          Length = 471

 Score =  417 bits (1071), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 223/445 (50%), Positives = 298/445 (66%), Gaps = 18/445 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++F +K+YGCQMNVYDS  +E +    G+      +DADLI+LNTC+IREKAAEK+YS L
Sbjct: 29  KKFHIKTYGCQMNVYDSEMIEKIVSGLGFTLSERAEDADLIILNTCNIREKAAEKLYSEL 88

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA- 143
           G+IR L+    K+   +L+VVAGCVAQAEGEEI+RR+  V+VVVGPQ+ + LPEL+ +  
Sbjct: 89  GQIRLLQK---KKQERILIVVAGCVAQAEGEEIMRRAENVDVVVGPQSIHSLPELIAKVN 145

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGV---TAFLTIQEGCDKFCTFCVVPYTRG 200
           R   + +  ++   +KF+ L+       RKR V   +AFL+IQEGCDKFC FCVVPYTRG
Sbjct: 146 RQSGKAIKMEFDPIEKFDYLA----EETRKRRVPQSSAFLSIQEGCDKFCAFCVVPYTRG 201

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC-TFSDLLYSLSEIKG 259
            E SRS  +V  EA  L   GV EITLLGQNVN + G    G K      L+  L +I  
Sbjct: 202 AEYSRSTEEVYREALSLTTKGVKEITLLGQNVNGYHGTLDSGNKVLNLGQLISRLGKIPS 261

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           L R+RYTTSHP DM   L  AH +   LMP++HLPVQSGSD+ILK MNR++T  +Y +II
Sbjct: 262 LKRIRYTTSHPVDMHKELYDAHANESKLMPFVHLPVQSGSDKILKQMNRKYTTADYLKII 321

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
           +  ++ R DIA SSDFIVGFPGE+DDDF+ T+ L++++ YAQ +SFKYSPR GTPG+   
Sbjct: 322 NEFQNARSDIAFSSDFIVGFPGESDDDFQQTLALIEQVNYAQCYSFKYSPRPGTPGAT-Y 380

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV 439
            Q+ E  K  RL  LQ+ L+E+Q+ FN   +G+ + VL +K  K   K+ GR+ ++Q V 
Sbjct: 381 PQISEETKNTRLQKLQQLLKEKQLEFNKKMIGKTVTVLFDK--KHPDKISGRTEYMQQVF 438

Query: 440 LNSKNHNIGD-IIKVRITDVKISTL 463
             S + N+ D I+ +R+ D    TL
Sbjct: 439 --SDDSNLLDKIVTMRVEDASTFTL 461


>gi|254456428|ref|ZP_05069857.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Candidatus Pelagibacter
           sp. HTCC7211]
 gi|207083430|gb|EDZ60856.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Candidatus Pelagibacter
           sp. HTCC7211]
          Length = 442

 Score =  412 bits (1060), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 202/445 (45%), Positives = 306/445 (68%), Gaps = 14/445 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           Q+ F+K++GCQMN YDS R+ D     G+++    ++A+  +LNTCHIR+KA EKVY  +
Sbjct: 3   QKIFIKTFGCQMNEYDSNRIYDSVKKIGFQKTEKYEEANCYLLNTCHIRDKAKEKVYHEI 62

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPE-LLERA 143
           GR++ +  S+ K     LV++AGCVAQAE +E+L+R P +++V+GPQ+Y+++ + +L   
Sbjct: 63  GRVKKIFRSKQKP----LVIIAGCVAQAENQEMLKREPYIDLVIGPQSYHKINDTILNHI 118

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
              K++ +T++    KF+ L+ ++   N    +++FLTIQEGCDKFC FCVVPYTRG E 
Sbjct: 119 EKKKKIEETEFDAISKFDYLNKIN---NDSGKISSFLTIQEGCDKFCHFCVVPYTRGPEY 175

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR L Q++DEA+ L DNG  EI LLGQNVNA+       E+   S+L++ + +I  + R+
Sbjct: 176 SRPLEQILDEAKYLADNGAQEIVLLGQNVNAY-----SYEQNKLSNLIFEIEKIPQIKRI 230

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           RYTTSHP+DMSD LIK +     LMP +HLPVQSGS++IL+ MNR+HT  EY +I D+++
Sbjct: 231 RYTTSHPKDMSDDLIKVYKSSKKLMPLVHLPVQSGSNKILERMNRKHTISEYHKIFDKLK 290

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
            + P+I  SSDFI+G+PGE ++DF+AT +L++KI +  +FSF +SPR GT  ++ LE +D
Sbjct: 291 DINPNIEFSSDFIIGYPGEEEEDFQATFELINKIKFINSFSFIFSPRPGTVAAD-LELID 349

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
           + +  ERL  +Q +L E Q++ N +   + I VL+E    +K ++ GRS ++ SV+ N K
Sbjct: 350 KKISMERLEIIQNQLFENQINMNKSLENKTINVLVENLTDDKTQVFGRSEYMTSVIFNGK 409

Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468
             +IG I+ VRI     STL+GE++
Sbjct: 410 KEDIGKILPVRIIKSNRSTLFGEII 434


>gi|254797167|ref|YP_003082007.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Neorickettsia risticii
           str. Illinois]
 gi|254590407|gb|ACT69769.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Neorickettsia risticii
           str. Illinois]
          Length = 454

 Score =  412 bits (1059), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 220/445 (49%), Positives = 297/445 (66%), Gaps = 18/445 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++F +K+YGCQMNVYDS  +E +    G+      +DADLI+LNTC+IREKAAEK+YS L
Sbjct: 12  KKFHIKTYGCQMNVYDSEMIEKIVGGLGFTLSEKAEDADLIILNTCNIREKAAEKLYSEL 71

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA- 143
           G+IR L+    K+   +L VVAGCVAQAEGEEI+RR+  V+VVVGPQ+ + LPEL+ +  
Sbjct: 72  GQIRLLQK---KKQERILTVVAGCVAQAEGEEIIRRAENVDVVVGPQSIHSLPELIAKVN 128

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGV---TAFLTIQEGCDKFCTFCVVPYTRG 200
           R  ++ +  ++   +KF+ L+        KR V   +AFL+IQEGCDKFC FCVVPYTRG
Sbjct: 129 RQSEKAIKIEFDPIEKFDYLA----EETNKRQVPQSSAFLSIQEGCDKFCAFCVVPYTRG 184

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC-TFSDLLYSLSEIKG 259
            E SR + +V  EA  L   GV EITLLGQNVN + G    G+       L+  L +I  
Sbjct: 185 AEYSRPIEEVYREALSLTTKGVKEITLLGQNVNGYHGALNSGDNVFNLGQLISHLGKIPS 244

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           L R+RYTTSHP DM   L  AH +   LMP++HLPVQSGSD+ILK MNR++T  +Y +II
Sbjct: 245 LKRIRYTTSHPVDMHKELYDAHANESKLMPFVHLPVQSGSDKILKKMNRKYTTADYLKII 304

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            + ++ R DIA SSDFIVGFPGE+DDDF+ T+ L++++ YAQ +SFKYSPR GTPG+   
Sbjct: 305 HKFQNARSDIAFSSDFIVGFPGESDDDFQQTLALIEQVNYAQCYSFKYSPRPGTPGA-AY 363

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV 439
            Q+ E  K  RL  LQ+ L+E+Q+ FN   +G+ + VL +K  K   K+ GR+ ++Q V 
Sbjct: 364 PQIAEETKNTRLQKLQQLLKEKQLEFNKKMIGKTVTVLFDK--KHPDKISGRTEYMQQVF 421

Query: 440 LNSKNHNIGD-IIKVRITDVKISTL 463
             S + N+ D I+ +R+ D    TL
Sbjct: 422 --SYDSNLLDKIVTMRVEDASTFTL 444


>gi|56416641|ref|YP_153715.1| hypothetical protein AM401 [Anaplasma marginale str. St. Maries]
 gi|81599177|sp|Q5PB69|MIAB_ANAMM RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|56387873|gb|AAV86460.1| hypothetical protein AM401 [Anaplasma marginale str. St. Maries]
          Length = 455

 Score =  410 bits (1053), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 210/418 (50%), Positives = 284/418 (67%), Gaps = 13/418 (3%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
            +++SYGCQMNVYDSL +ED+    G+  V   +DAD+I++NTCH+REKAAEK+YS LGR
Sbjct: 5   LYIESYGCQMNVYDSLMVEDILRPLGFAAVQRPEDADIIMVNTCHVREKAAEKLYSALGR 64

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           +R L+    KEG   L+VVAGCVAQAEGE +  R+P V+VVVGPQ+ + LPEL+ +A   
Sbjct: 65  MRMLR----KEGA--LIVVAGCVAQAEGEAVFERAPFVDVVVGPQSIHTLPELIMKATRD 118

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
            + ++ ++    KF+   ++       RGV+AF+++QEGCDKFCTFCVVPYTRG E SRS
Sbjct: 119 AKQMNVEFPAISKFD---VISTDLLVSRGVSAFVSVQEGCDKFCTFCVVPYTRGPEYSRS 175

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
           +  V+ E RKL D G  E+ LLGQNVNA+ G    G +     L+  ++E++G+ R+RYT
Sbjct: 176 VEDVLAEVRKLADGGTKEVVLLGQNVNAYHGT-YKGNEWDLGRLIRKVAEVEGIERIRYT 234

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
           TSHPRDM   L  AH     L+P +HLPVQSGSD +L+ MNR+H+  EY  IID ++  R
Sbjct: 235 TSHPRDMHSSLYDAHKHEPKLLPCVHLPVQSGSDSVLRKMNRKHSVQEYMDIIDTLKEAR 294

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
            DIA+SSDFIVGFPGET++DF ATMDLV  +G+A ++SFKYSPR GTPG+    QV E  
Sbjct: 295 SDIALSSDFIVGFPGETEEDFEATMDLVRHVGFATSYSFKYSPRPGTPGAEYTNQVPEEE 354

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLI---EKHGKEKGKLVGRSPWLQSVVLN 441
           K+ RL  LQ  L  QQ  F  + +G+ + VL+   E       ++ G+S  +Q V ++
Sbjct: 355 KSSRLHRLQHLLLTQQRLFTKSMIGKTVSVLVCGTEGSRSCSNEVFGKSEHMQPVYIS 412


>gi|254994852|ref|ZP_05277042.1| hypothetical protein AmarM_01756 [Anaplasma marginale str.
           Mississippi]
          Length = 463

 Score =  409 bits (1052), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 210/418 (50%), Positives = 284/418 (67%), Gaps = 13/418 (3%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
            +++SYGCQMNVYDSL +ED+    G+  V   +DAD+I++NTCH+REKAAEK+YS LGR
Sbjct: 5   LYIESYGCQMNVYDSLMVEDILRPLGFAAVQRPEDADIIMVNTCHVREKAAEKLYSALGR 64

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           +R L+    KEG   L+VVAGCVAQAEGE +  R+P V+VVVGPQ+ + LPEL+ +A   
Sbjct: 65  MRMLR----KEGA--LIVVAGCVAQAEGEAVFERAPFVDVVVGPQSIHTLPELIMKATRD 118

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
            + ++ ++    KF+   ++       RGV+AF+++QEGCDKFCTFCVVPYTRG E SRS
Sbjct: 119 AKQMNVEFPAISKFD---VISTDLLVSRGVSAFVSVQEGCDKFCTFCVVPYTRGPEYSRS 175

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
           +  V+ E RKL D G  E+ LLGQNVNA+ G    G +     L+  ++E++G+ R+RYT
Sbjct: 176 VEDVLAEVRKLADGGTKEVVLLGQNVNAYHGT-YKGNEWDLGRLIRKVAEVEGIERIRYT 234

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
           TSHPRDM   L  AH     L+P +HLPVQSGSD +L+ MNR+H+  EY  IID ++  R
Sbjct: 235 TSHPRDMHSSLYDAHKHEPKLLPCVHLPVQSGSDSVLRKMNRKHSVQEYMDIIDTLKEAR 294

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
            DIA+SSDFIVGFPGET++DF ATMDLV  +G+A ++SFKYSPR GTPG+    QV E  
Sbjct: 295 SDIALSSDFIVGFPGETEEDFEATMDLVRHVGFATSYSFKYSPRPGTPGAEYTNQVPEEE 354

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLI---EKHGKEKGKLVGRSPWLQSVVLN 441
           K+ RL  LQ  L  QQ  F  + +G+ + VL+   E       ++ G+S  +Q V ++
Sbjct: 355 KSSRLHRLQHLLLTQQRLFTKSMIGKTVSVLVCGTEGSRSCSNEVFGKSEHMQPVYIS 412


>gi|269958944|ref|YP_003328733.1| putative 2-methylthioadenine synthetase [Anaplasma centrale str.
           Israel]
 gi|269848775|gb|ACZ49419.1| putative 2-methylthioadenine synthetase [Anaplasma centrale str.
           Israel]
          Length = 463

 Score =  409 bits (1051), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 210/418 (50%), Positives = 284/418 (67%), Gaps = 13/418 (3%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
            +++SYGCQMNVYDSL +ED+    G+  V   +DAD+I++NTCH+REKAAEK+YS LGR
Sbjct: 5   LYIESYGCQMNVYDSLMVEDILRPLGFAAVQRPEDADIIMVNTCHVREKAAEKLYSALGR 64

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           +R L+    KEG   L+VVAGCVAQAEGE +  R+P V+VVVGPQ+ + LPEL+ +A   
Sbjct: 65  MRMLR----KEGA--LIVVAGCVAQAEGEAVFERAPFVDVVVGPQSIHTLPELIMKATRD 118

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
            + ++ ++    KF+   ++       RGV+AF+++QEGCDKFCTFCVVPYTRG E SRS
Sbjct: 119 AKQMNVEFPAISKFD---VISTDLLVSRGVSAFVSVQEGCDKFCTFCVVPYTRGPEYSRS 175

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
           +  V+ E RKL D G  E+ LLGQNVNA+ G    G +     L+  ++E+ G+ R+RYT
Sbjct: 176 VEDVLAEVRKLADGGTKEVVLLGQNVNAYHGT-YKGNEWDLGRLIRKVAEVDGIERIRYT 234

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
           TSHPRDM   L  AH     L+P +HLPVQSGSD +L+ MNR+H+  EY  IID ++  R
Sbjct: 235 TSHPRDMHSSLYDAHKHEPKLLPCVHLPVQSGSDSVLRKMNRKHSVQEYMDIIDTLKEAR 294

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
            DIA+SSDFIVGFPGET++DF ATMDLV  +G+A ++SFKYSPR GTPG+    QV E  
Sbjct: 295 SDIALSSDFIVGFPGETEEDFEATMDLVRHVGFATSYSFKYSPRPGTPGAEYTNQVPEEE 354

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG---KLVGRSPWLQSVVLN 441
           K+ RL  LQ  L  QQ  F  + +G+ + VL+      +G   ++ G+S  +Q V ++
Sbjct: 355 KSSRLHRLQHLLLTQQRLFTKSMIGKTVSVLVCGTEGSRGCSNEVFGKSEHMQPVYIS 412


>gi|121606262|ref|YP_983591.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Polaromonas
           naphthalenivorans CJ2]
 gi|229890592|sp|A1VSP2|MIAB_POLNA RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|120595231|gb|ABM38670.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Polaromonas
           naphthalenivorans CJ2]
          Length = 447

 Score =  408 bits (1049), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 210/451 (46%), Positives = 298/451 (66%), Gaps = 15/451 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           +P++ F+K++GCQMN YDS +M D+  + +GYE   ++D+ADLI+ NTC +REKA EKV+
Sbjct: 1   MPKKVFIKTFGCQMNEYDSDKMSDVLHAAEGYENTQNIDEADLILFNTCSVREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL- 140
           S LGR+++LK   +      L+ V GCVA  EGE I++R+P V+VV GPQT +RLP+LL 
Sbjct: 61  SDLGRVKHLKAKGV------LIGVGGCVASQEGEAIIQRAPYVDVVFGPQTLHRLPQLLA 114

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
            RAR GK  VD  +   +KF+ L        R  G +AF++I EGC K+C++CVVPYTRG
Sbjct: 115 SRARLGKPQVDISFPEIEKFDHLPPA-----RVEGASAFVSIMEGCSKYCSYCVVPYTRG 169

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-GLDGEKCTFSDLLYSLSEIKG 259
            E+SR    V+ E   L D GV E+TLLGQNVNA+RG  G   E   F+ LL  +SEI G
Sbjct: 170 EEVSRPFEDVLVEVAGLADQGVKEVTLLGQNVNAYRGSMGGTAEIADFATLLEYVSEIPG 229

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           + R+RY TSHP + +  LI A+  L  L+ +LHLPVQ GSDRIL +M R +TA EY+  I
Sbjct: 230 IERIRYITSHPNEFTQRLIDAYATLPKLVNHLHLPVQHGSDRILMAMKRGYTAMEYKSTI 289

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            ++R++RPD+A+SSDFIVGFPGET+DDF   M LV+ +GY  +FSF +SPR GTP +N+ 
Sbjct: 290 RKLRAIRPDLAMSSDFIVGFPGETEDDFEKLMKLVNDVGYDTSFSFIFSPRPGTPAANLA 349

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSV 438
           +     VK +RL  LQ  L +   + + + +G +  +L+E    K+  +L+GR+   + V
Sbjct: 350 DDTPHEVKLKRLQHLQATLDDSVRAISASRLGTVQRILVEGTARKDASELMGRTECNRVV 409

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
           +L  +   IG ++ VRIT+    +L GE++ 
Sbjct: 410 ILKGQPRLIGQMVDVRITEASQRSLRGEVLT 440


>gi|114778653|ref|ZP_01453469.1| 2-methylthioadenine synthetase [Mariprofundus ferrooxydans PV-1]
 gi|114551118|gb|EAU53679.1| 2-methylthioadenine synthetase [Mariprofundus ferrooxydans PV-1]
          Length = 452

 Score =  408 bits (1049), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 212/445 (47%), Positives = 295/445 (66%), Gaps = 11/445 (2%)

Query: 27  FFVKSYGCQMNVYDSLRMED-MFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
            F+++YGCQMN YDS RM D M  + G   V   +DAD+I++NTC +REKA EKVYS LG
Sbjct: 14  LFIRTYGCQMNEYDSGRMADIMKQAYGLRLVALPEDADVILMNTCSVREKAEEKVYSELG 73

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R R LK  R     D+++ V GCV Q EGE I +R+P V++V GPQTY+RLPE++++ R 
Sbjct: 74  RYRKLKLKR----PDMIIGVGGCVGQQEGERIQKRAPYVDLVFGPQTYHRLPEMVKQIRR 129

Query: 146 GK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            +  +   +    +KF+ L    G     +GV   +TI EGCDKFCTFCVVPYTRG E+S
Sbjct: 130 ERVHLTQVEMPEIEKFDHLPKHQG-----QGVAGCVTIMEGCDKFCTFCVVPYTRGPELS 184

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R ++ ++ E R+L+ +GV EI+LLGQNVN +RG G D E+  F+ LLY+++++ GL RLR
Sbjct: 185 RPVADILSECRQLLADGVVEISLLGQNVNGYRGVGPDDEEWDFTMLLYAVAKLDGLKRLR 244

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +TTSHP +M+  L +A  ++  LMPYLHLPVQSGSD +LK+M+R H    Y + I+ +R 
Sbjct: 245 FTTSHPMEMTSELCQAFAEIPQLMPYLHLPVQSGSDAMLKAMHRGHDRDTYLRQIEELRE 304

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             PDIA+SSDFIVG+PGE+D DF  T+DL  ++GY  A+ FKYSPR GTP ++  + V E
Sbjct: 305 YCPDIALSSDFIVGYPGESDADFEDTLDLARRVGYDSAYCFKYSPRPGTPAAHAEDNVPE 364

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
            VK ERL  L   +REQ        +G+ +EVL+EK G+ +G + GR+   + V      
Sbjct: 365 AVKDERLQRLLTLMREQSREAMQRQLGRTVEVLVEKAGRNEGDMEGRTADYRIVHFRGSA 424

Query: 445 HNIGDIIKVRITDVKISTLYGELVV 469
             IG ++ VRI +    +L GEL++
Sbjct: 425 RQIGQVMPVRIVETYGQSLRGELIL 449


>gi|260582067|ref|ZP_05849862.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Haemophilus influenzae
           NT127]
 gi|260094957|gb|EEW78850.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Haemophilus influenzae
           NT127]
          Length = 474

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 210/447 (46%), Positives = 296/447 (66%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           Q+  +K++GCQMN YDS +M D+  S  G E   + ++AD+++LNTC IREKA EKV+  
Sbjct: 3   QKLHIKTWGCQMNEYDSSKMADLLLSTHGLELTEAPEEADVLLLNTCSIREKAQEKVFHQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK    K   +L++ V GCVA  EGE I  R+P V+++ GPQT +RLPE++ + 
Sbjct: 63  LGRWKELK----KNNPNLVIGVGGCVASQEGEHIRHRAPYVDIIFGPQTLHRLPEMINQI 118

Query: 144 RFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           R GK  VVD  +   +KF+RL        R  G TAF++I EGC+K+CTFCVVPYTRG E
Sbjct: 119 RGGKSSVVDVSFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTFCVVPYTRGEE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR +  V+ E  +L D GV E+ LLGQNVNA+RG   DG+ C+F++LL  ++ I G+ R
Sbjct: 174 VSRPVDDVLFEIAQLADQGVREVNLLGQNVNAYRGPTHDGQICSFAELLRLVASIDGIDR 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LR+TTSHP + +D +I  + D   L+ +LHLPVQ+GSDR+L  M R HTA EY+ II ++
Sbjct: 234 LRFTTSHPIEFTDDIIDVYRDTPELVSFLHLPVQAGSDRVLTMMKRAHTALEYKSIIRKL 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+VRPDI ISSDFIVGFPGET +DF  TM+L+ ++ +  +FSF YS R GTP ++M + V
Sbjct: 294 RAVRPDIQISSDFIVGFPGETAEDFEQTMNLIAQVNFDMSFSFVYSARPGTPAADMPDDV 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441
            E+ K +RL  LQ+++ +Q   F+   +G    VL+E   K+   +L GR+   + V   
Sbjct: 354 TEDEKKQRLYVLQERINQQAAQFSRRMLGTEQRVLVEGPSKKDIMELTGRTETNRIVNFQ 413

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                IG  + V+ITDV  ++L GE+V
Sbjct: 414 GSPEMIGKFVDVKITDVYTNSLRGEVV 440


>gi|222475005|ref|YP_002563420.1| 2-methylthioadenine synthetase (miaB) [Anaplasma marginale str.
           Florida]
 gi|222419141|gb|ACM49164.1| 2-methylthioadenine synthetase (miaB) [Anaplasma marginale str.
           Florida]
          Length = 454

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 209/418 (50%), Positives = 283/418 (67%), Gaps = 13/418 (3%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
            +++SYGCQMNVYDSL +ED+    G+  V   +DAD+I++NTCH+REKAAEK+YS LGR
Sbjct: 5   LYIESYGCQMNVYDSLMVEDILRPLGFAAVQRPEDADIIMVNTCHVREKAAEKLYSALGR 64

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           +R L+    KEG   L+VVAGCVAQAEGE +  R+P V+VVVGPQ+ + LPEL+ +A   
Sbjct: 65  MRMLR----KEGA--LIVVAGCVAQAEGEAVFERAPFVDVVVGPQSIHTLPELIMKATRD 118

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
            + ++ ++    KF+   ++       RGV+AF+++QEGCDKFCTFCVVPYTRG E SRS
Sbjct: 119 AKQMNVEFPAISKFD---VISTDLLVSRGVSAFVSVQEGCDKFCTFCVVPYTRGPEYSRS 175

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
           +  V+ E RKL D G  E+ LLGQNVNA+ G    G +     L+  ++E+ G+ R+RYT
Sbjct: 176 VEDVLAEVRKLADGGTKEVVLLGQNVNAYHGT-YKGNEWDLGRLIRKVAEVDGIERIRYT 234

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
           TSHP+DM   L  AH     L+P +HLPVQSGSD +L+ MNR+H+  EY  IID ++  R
Sbjct: 235 TSHPKDMHSSLYDAHKHEPKLLPCVHLPVQSGSDSVLRKMNRKHSVQEYMDIIDTLKEAR 294

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
            DIA+SSDFIVGFPGET++DF ATMDLV  +G+A ++SFKYSPR GTPG+    QV E  
Sbjct: 295 SDIALSSDFIVGFPGETEEDFEATMDLVRHVGFATSYSFKYSPRPGTPGAEYTNQVPEEE 354

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLI---EKHGKEKGKLVGRSPWLQSVVLN 441
           K+ RL  LQ  L  QQ  F  + +G+ + VL+   E       ++ G+S  +Q V ++
Sbjct: 355 KSSRLHRLQHLLLTQQRLFTKSMIGKTVSVLVCGTEGSRSCSNEVFGKSEHMQPVYIS 412


>gi|255004110|ref|ZP_05278911.1| 2-methylthioadenine synthetase (miaB) [Anaplasma marginale str.
           Virginia]
          Length = 463

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 209/418 (50%), Positives = 283/418 (67%), Gaps = 13/418 (3%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
            +++SYGCQMNVYDSL +ED+    G+  V   +DAD+I++NTCH+REKAAEK+YS LGR
Sbjct: 5   LYIESYGCQMNVYDSLMVEDILRPLGFAAVQRPEDADIIMVNTCHVREKAAEKLYSALGR 64

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           +R L+    KEG   L+VVAGCVAQAEGE +  R+P V+VVVGPQ+ + LPEL+ +A   
Sbjct: 65  MRMLR----KEGA--LIVVAGCVAQAEGEAVFERAPFVDVVVGPQSIHTLPELIMKATRD 118

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
            + ++ ++    KF+   ++       RGV+AF+++QEGCDKFCTFCVVPYTRG E SRS
Sbjct: 119 AKQMNVEFPAISKFD---VISTDLLVSRGVSAFVSVQEGCDKFCTFCVVPYTRGPEYSRS 175

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
           +  V+ E RKL D G  E+ LLGQNVNA+ G    G +     L+  ++E+ G+ R+RYT
Sbjct: 176 VEDVLAEVRKLADGGTKEVVLLGQNVNAYHGT-YKGNEWDLGRLIRKVAEVDGIERIRYT 234

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
           TSHP+DM   L  AH     L+P +HLPVQSGSD +L+ MNR+H+  EY  IID ++  R
Sbjct: 235 TSHPKDMHSSLYDAHKHEPKLLPCVHLPVQSGSDSVLRKMNRKHSVQEYMDIIDTLKEAR 294

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
            DIA+SSDFIVGFPGET++DF ATMDLV  +G+A ++SFKYSPR GTPG+    QV E  
Sbjct: 295 SDIALSSDFIVGFPGETEEDFEATMDLVRHVGFATSYSFKYSPRPGTPGAEYTNQVPEEE 354

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLI---EKHGKEKGKLVGRSPWLQSVVLN 441
           K+ RL  LQ  L  QQ  F  + +G+ + VL+   E       ++ G+S  +Q V ++
Sbjct: 355 KSSRLHRLQHLLLTQQRLFTKSMIGKTVSVLVCGTEGSRSCSNEVFGKSEHMQPVYIS 412


>gi|145635209|ref|ZP_01790913.1| uracil-DNA glycosylase [Haemophilus influenzae PittAA]
 gi|145267488|gb|EDK07488.1| uracil-DNA glycosylase [Haemophilus influenzae PittAA]
          Length = 474

 Score =  407 bits (1045), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 209/447 (46%), Positives = 296/447 (66%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           Q+  +K++GCQMN YDS +M D+  S  G E   + ++AD+++LNTC IREKA EKV+  
Sbjct: 3   QKLHIKTWGCQMNEYDSSKMADLLLSTHGLELTEAPEEADVLLLNTCSIREKAQEKVFHQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK    K   +L++ V GCVA  EGE I  R+P V+++ GPQT +RLPE++ + 
Sbjct: 63  LGRWKELK----KNNPNLVIGVGGCVASQEGEHIRHRAPYVDIIFGPQTLHRLPEMINQI 118

Query: 144 RFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           R GK  VVD  +   +KF+RL        R  G TAF++I EGC+K+CTFCVVPYTRG E
Sbjct: 119 RGGKSSVVDVSFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTFCVVPYTRGEE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR +  V+ E  +L + GV E+ LLGQNVNA+RG   DG+ C+F++LL  ++ I G+ R
Sbjct: 174 VSRPVDDVLFEIAQLAEQGVREVNLLGQNVNAYRGPTHDGQICSFAELLRLVASIDGIDR 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LR+TTSHP + +D +I  + D   L+ +LHLPVQ+GSDR+L  M R HTA EY+ II ++
Sbjct: 234 LRFTTSHPIEFTDDIIDVYRDTPELVSFLHLPVQAGSDRVLTMMKRAHTALEYKSIIRKL 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+VRPDI ISSDFIVGFPGET +DF  TM+L+ ++ +  +FSF YS R GTP ++M + V
Sbjct: 294 RAVRPDIQISSDFIVGFPGETSEDFEQTMNLIAQVNFDMSFSFVYSARPGTPAADMPDDV 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441
            E+ K +RL  LQ+++ +Q   F+   +G    VL+E   K+   +L GR+   + V   
Sbjct: 354 TEDEKKQRLYVLQERINQQAAQFSRRMLGTEQRVLVEGPSKKDIMELTGRTETNRIVNFQ 413

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                IG  + V+ITDV  ++L GE+V
Sbjct: 414 GSPEMIGKFVDVKITDVYTNSLRGEVV 440


>gi|255002985|ref|ZP_05277949.1| 2-methylthioadenine synthetase (miaB) [Anaplasma marginale str.
           Puerto Rico]
          Length = 425

 Score =  407 bits (1045), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 208/418 (49%), Positives = 283/418 (67%), Gaps = 13/418 (3%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
            +++SYGCQMNVYDSL +ED+    G+  V   +DAD+I++NTCH+REKAAEK+YS LGR
Sbjct: 5   LYIESYGCQMNVYDSLMVEDILRPLGFAAVQRPEDADIIMVNTCHVREKAAEKLYSALGR 64

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           +R L+    KEG   L+VVAGCVAQAEGE +  R+P V+VVVGPQ+ + LPEL+ +A   
Sbjct: 65  MRMLR----KEGA--LIVVAGCVAQAEGEAVFERAPFVDVVVGPQSIHTLPELIMKATRD 118

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
            + ++ ++    KF+   ++       RGV+AF+++QEGCDKFCTFCVVPYTRG E SRS
Sbjct: 119 AKQMNVEFPAISKFD---VISTDLLVSRGVSAFVSVQEGCDKFCTFCVVPYTRGPEYSRS 175

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
           +  V+ E RKL D G  E+ LLGQNVNA+ G    G +     L+  ++E+ G+ R+RYT
Sbjct: 176 VEDVLAEVRKLADGGTKEVVLLGQNVNAYHGT-YKGNEWDLGRLIRKVAEVDGIERIRYT 234

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
           TSHP+DM   L  AH     L+P +HLPVQSGSD +L+ MNR+H+  EY  IID ++  R
Sbjct: 235 TSHPKDMHSSLYDAHKHEPKLLPCVHLPVQSGSDSVLRKMNRKHSVQEYMDIIDTLKEAR 294

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
            DIA+SSDFIVGFPGET++DF ATM+LV  +G+A ++SFKYSPR GTPG+    QV E  
Sbjct: 295 SDIALSSDFIVGFPGETEEDFEATMNLVRHVGFATSYSFKYSPRPGTPGAEYTNQVPEEE 354

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLI---EKHGKEKGKLVGRSPWLQSVVLN 441
           K+ RL  LQ  L  QQ  F  + +G+ + VL+   E       ++ G+S  +Q V ++
Sbjct: 355 KSSRLHRLQHLLLTQQRLFTKSMIGKTVSVLVCGTEGSRSCSNEVFGKSEHMQPVYIS 412


>gi|30250262|ref|NP_842332.1| Fe-S oxidoreductase family protein [Nitrosomonas europaea ATCC
           19718]
 gi|75540036|sp|Q82SI7|MIAB_NITEU RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|30181057|emb|CAD86247.1| Fe-S oxidoreductases family 1 [Nitrosomonas europaea ATCC 19718]
          Length = 443

 Score =  406 bits (1044), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 211/447 (47%), Positives = 298/447 (66%), Gaps = 16/447 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQ-GYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + +++++GCQMN YDS +M D+  S+ G E   + ++ADLI+ NTC +REKA EKV+  L
Sbjct: 4   KLYIRTFGCQMNEYDSAKMADILLSEKGMELAETPEEADLILFNTCSVREKAQEKVFHDL 63

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE-RA 143
           GR+R+LKNS+     DLL+ V GCVA  EG EI++R+P V++V GPQT +RLP+L++ R 
Sbjct: 64  GRVRHLKNSK----PDLLIGVGGCVASQEGPEIVKRAPFVDLVFGPQTLHRLPDLIDARR 119

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           R G+  VD  +   +KF+RL        R  G TAF++I EGC K+C+FCVVPYTRG E+
Sbjct: 120 RTGRPQVDISFPEIEKFDRLPPA-----RTEGSTAFVSIMEGCSKYCSFCVVPYTRGEEV 174

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR L  V+ E   L   GV E+TLLGQNVNA+ GK ++GE   F+ LL  + EI G+ R+
Sbjct: 175 SRPLDDVLTEVAGLAIQGVKEVTLLGQNVNAYLGKMINGEIADFATLLDYIHEIPGIERI 234

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           RYTTSHPR+ +  LI+A+  L  L+ ++HLPVQSGSDRIL +M R +T  EY+ I+ ++R
Sbjct: 235 RYTTSHPREFTARLIEAYQRLPKLVGHVHLPVQSGSDRILAAMKRGYTTVEYKSIVRKLR 294

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
            VRPDI+ISSDFI+GFPGET+DDF ATM L+D + + ++FSF YSPR GTP +++ +   
Sbjct: 295 LVRPDISISSDFIIGFPGETEDDFEATMKLIDDVHFDESFSFIYSPRPGTPAADLPDNTS 354

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLNS 442
             +K  RL  LQ+K++    + +   V  +  +L+E    K+ G+  GR+    + V+N 
Sbjct: 355 HQIKLTRLYRLQEKIQLNAQAISQGMVDTVQRILVEGPSRKDPGEFCGRTD--NNRVVNF 412

Query: 443 KNHN--IGDIIKVRITDVKISTLYGEL 467
             H    G  I +RIT V   TL GE+
Sbjct: 413 AGHAGLTGSFIDIRITAVSSHTLRGEI 439


>gi|16271994|ref|NP_438192.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Haemophilus
           influenzae Rd KW20]
 gi|145629127|ref|ZP_01784926.1| lipoyl synthase [Haemophilus influenzae 22.1-21]
 gi|145630690|ref|ZP_01786469.1| lipoyl synthase [Haemophilus influenzae R3021]
 gi|145636777|ref|ZP_01792443.1| lipoyl synthase [Haemophilus influenzae PittHH]
 gi|145639692|ref|ZP_01795295.1| lipoyl synthase [Haemophilus influenzae PittII]
 gi|148827177|ref|YP_001291930.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Haemophilus
           influenzae PittGG]
 gi|229845365|ref|ZP_04465496.1| hypothetical protein CGSHi6P18H1_00417 [Haemophilus influenzae
           6P18H1]
 gi|260580677|ref|ZP_05848504.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Haemophilus influenzae
           RdAW]
 gi|319896441|ref|YP_004134634.1| isopentenyl-adenosine a37 tRNA methylthiolase [Haemophilus
           influenzae F3031]
 gi|2501533|sp|Q57163|MIAB_HAEIN RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|229890551|sp|A5UFJ1|MIAB_HAEIG RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|1572963|gb|AAC21697.1| conserved hypothetical protein [Haemophilus influenzae Rd KW20]
 gi|144978630|gb|EDJ88353.1| lipoyl synthase [Haemophilus influenzae 22.1-21]
 gi|144983816|gb|EDJ91266.1| lipoyl synthase [Haemophilus influenzae R3021]
 gi|145270075|gb|EDK10012.1| lipoyl synthase [Haemophilus influenzae PittHH]
 gi|145271249|gb|EDK11163.1| lipoyl synthase [Haemophilus influenzae PittII]
 gi|148718419|gb|ABQ99546.1| hypothetical protein CGSHiGG_02565 [Haemophilus influenzae PittGG]
 gi|229811673|gb|EEP47371.1| hypothetical protein CGSHi6P18H1_00417 [Haemophilus influenzae
           6P18H1]
 gi|260092739|gb|EEW76675.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Haemophilus influenzae
           RdAW]
 gi|301168620|emb|CBW28210.1| isopentenyl-adenosine A37 tRNA methylthiolase [Haemophilus
           influenzae 10810]
 gi|309750662|gb|ADO80646.1| 2-methylthioadenine synthetase (MiaB) [Haemophilus influenzae
           R2866]
 gi|317431943|emb|CBY80291.1| isopentenyl-adenosine A37 tRNA methylthiolase [Haemophilus
           influenzae F3031]
          Length = 474

 Score =  406 bits (1043), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 209/447 (46%), Positives = 296/447 (66%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           Q+  +K++GCQMN YDS +M D+  S  G E   + ++AD+++LNTC IREKA EKV+  
Sbjct: 3   QKLHIKTWGCQMNEYDSSKMADLLLSTHGLELTEAPEEADVLLLNTCSIREKAQEKVFHQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK    K   +L++ V GCVA  EGE I  R+P V+++ GPQT +RLPE++ + 
Sbjct: 63  LGRWKELK----KNNPNLVIGVGGCVASQEGEHIRHRAPYVDIIFGPQTLHRLPEMINQI 118

Query: 144 RFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           R GK  VVD  +   +KF+RL        R  G TAF++I EGC+K+CTFCVVPYTRG E
Sbjct: 119 RGGKSSVVDVSFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTFCVVPYTRGEE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR +  V+ E  +L + GV E+ LLGQNVNA+RG   DG+ C+F++LL  ++ I G+ R
Sbjct: 174 VSRPVDDVLFEIAQLAEQGVREVNLLGQNVNAYRGPTHDGQICSFAELLRLVASIDGIDR 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LR+TTSHP + +D +I  + D   L+ +LHLPVQ+GSDR+L  M R HTA EY+ II ++
Sbjct: 234 LRFTTSHPIEFTDDIIDVYRDTPELVSFLHLPVQAGSDRVLTMMKRAHTALEYKSIIRKL 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+VRPDI ISSDFIVGFPGET +DF  TM+L+ ++ +  +FSF YS R GTP ++M + V
Sbjct: 294 RAVRPDIQISSDFIVGFPGETAEDFEQTMNLIAQVNFDMSFSFVYSARPGTPAADMPDDV 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441
            E+ K +RL  LQ+++ +Q   F+   +G    VL+E   K+   +L GR+   + V   
Sbjct: 354 TEDEKKQRLYVLQERINQQAAQFSRRMLGTEQRVLVEGPSKKDIMELTGRTETNRIVNFQ 413

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                IG  + V+ITDV  ++L GE+V
Sbjct: 414 GSPEMIGKFVDVKITDVYTNSLRGEVV 440


>gi|145633424|ref|ZP_01789154.1| lipoyl synthase [Haemophilus influenzae 3655]
 gi|319774971|ref|YP_004137459.1| isopentenyl-adenosine A37 tRNA methylthiolase [Haemophilus
           influenzae F3047]
 gi|329123127|ref|ZP_08251697.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Haemophilus aegyptius
           ATCC 11116]
 gi|144985987|gb|EDJ92589.1| lipoyl synthase [Haemophilus influenzae 3655]
 gi|317449562|emb|CBY85767.1| isopentenyl-adenosine A37 tRNA methylthiolase [Haemophilus
           influenzae F3047]
 gi|327471682|gb|EGF17124.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Haemophilus aegyptius
           ATCC 11116]
          Length = 474

 Score =  406 bits (1043), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 209/447 (46%), Positives = 296/447 (66%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           Q+  +K++GCQMN YDS +M D+  S  G E   + ++AD+++LNTC IREKA EKV+  
Sbjct: 3   QKLHIKTWGCQMNEYDSSKMADLLLSTHGLELTEAPEEADVLLLNTCSIREKAQEKVFHQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK    K   +L++ V GCVA  EGE I  R+P V+++ GPQT +RLPE++ + 
Sbjct: 63  LGRWKELK----KNNPNLVIGVGGCVASQEGEHIRHRAPYVDIIFGPQTLHRLPEMINQI 118

Query: 144 RFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           R GK  VVD  +   +KF+RL        R  G TAF++I EGC+K+CTFCVVPYTRG E
Sbjct: 119 RGGKSSVVDVSFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTFCVVPYTRGEE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR +  V+ E  +L + GV E+ LLGQNVNA+RG   DG+ C+F++LL  ++ I G+ R
Sbjct: 174 VSRPVDDVLFEIAQLAEQGVREVNLLGQNVNAYRGPTHDGQICSFAELLRLVASIDGIDR 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LR+TTSHP + +D +I  + D   L+ +LHLPVQ+GSDR+L  M R HTA EY+ II ++
Sbjct: 234 LRFTTSHPIEFTDDIIDVYRDTPELVSFLHLPVQAGSDRVLTMMKRGHTALEYKSIIRKL 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+VRPDI ISSDFIVGFPGET +DF  TM+L+ ++ +  +FSF YS R GTP ++M + V
Sbjct: 294 RAVRPDIQISSDFIVGFPGETAEDFEQTMNLIAQVNFDMSFSFVYSARPGTPAADMPDDV 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441
            E+ K +RL  LQ+++ +Q   F+   +G    VL+E   K+   +L GR+   + V   
Sbjct: 354 TEDEKKQRLYVLQERINQQAAQFSRRMLGTEQRVLVEGPSKKDIMELTGRTETNRIVNFQ 413

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                IG  + V+ITDV  ++L GE+V
Sbjct: 414 GSPEMIGKFVDVKITDVYTNSLRGEVV 440


>gi|309972847|gb|ADO96048.1| 2-methylthioadenine synthetase (MiaB) [Haemophilus influenzae
           R2846]
          Length = 474

 Score =  405 bits (1042), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 209/447 (46%), Positives = 296/447 (66%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           Q+  +K++GCQMN YDS +M D+  S  G E   + ++AD+++LNTC IREKA EKV+  
Sbjct: 3   QKLHIKTWGCQMNEYDSSKMADLLLSTHGLELTEAPEEADVLLLNTCSIREKAQEKVFHQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK    K   +L++ V GCVA  EGE I  R+P V+++ GPQT +RLPE++ + 
Sbjct: 63  LGRWKELK----KNNPNLVIGVGGCVASQEGEHIRHRAPYVDIIFGPQTLHRLPEMINQI 118

Query: 144 RFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           R GK  VVD  +   +KF+RL        R  G TAF++I EGC+K+CTFCVVPYTRG E
Sbjct: 119 RGGKSSVVDVSFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTFCVVPYTRGEE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR +  V+ E  +L D GV E+ LLGQNVNA+RG   DG+ C+F++LL  ++ I G+ R
Sbjct: 174 VSRPVDDVLFEIAQLADQGVREVNLLGQNVNAYRGPTHDGQICSFAELLRLVASIDGIDR 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LR+TTSHP + ++ +I  + D   L+ +LHLPVQ+GSDR+L  M R HTA EY+ II ++
Sbjct: 234 LRFTTSHPIEFTNDIIDVYRDTPELVSFLHLPVQAGSDRVLTMMKRGHTALEYKSIIRKL 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+VRPDI ISSDFIVGFPGET +DF  TM+L+ ++ +  +FSF YS R GTP ++M + V
Sbjct: 294 RAVRPDIQISSDFIVGFPGETAEDFEQTMNLIAQVNFDMSFSFVYSARPGTPAADMPDDV 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441
            E+ K +RL  LQ+++ +Q   F+   +G    VL+E   K+   +L GR+   + V   
Sbjct: 354 TEDEKKQRLYVLQERINQQAAQFSRRMLGTEQRVLVEGPSKKDIMELTGRTETNRIVNFQ 413

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                IG  + V+ITDV  ++L GE+V
Sbjct: 414 GSPEMIGKFVDVKITDVYTNSLRGEVV 440


>gi|251793083|ref|YP_003007809.1| (dimethylallyl)adenosine tRNA methylthiotransferase
           [Aggregatibacter aphrophilus NJ8700]
 gi|247534476|gb|ACS97722.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Aggregatibacter
           aphrophilus NJ8700]
          Length = 474

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 211/447 (47%), Positives = 296/447 (66%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           Q+  +K++GCQMN YDS +M D+  S  G E  +  ++AD+++LNTC IREKA EKV+  
Sbjct: 3   QKLHIKTWGCQMNEYDSSKMADLLHSTHGLELTDVPEEADVLLLNTCSIREKAQEKVFHQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK S  K    LL+ V GCVA  EGE I  R+P V++V GPQT +RLPE++ + 
Sbjct: 63  LGRWKELKKSNPK----LLIGVGGCVASQEGEHIRTRAPYVDIVFGPQTLHRLPEMINQI 118

Query: 144 RFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           R GK  VVD  +   +KF+RL        R  G TAF++I EGC+K+CT+CVVPYTRG E
Sbjct: 119 RGGKSSVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTYCVVPYTRGEE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR +  ++ E  +L + GV E+ LLGQNVNA+RG   DGE CTF++LL  ++ I G+ R
Sbjct: 174 VSRPVDDILFEIAQLAEQGVREVNLLGQNVNAYRGPTFDGEICTFAELLRLVAAIDGIDR 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LR+TTSHP + +D +I  + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II ++
Sbjct: 234 LRFTTSHPIEFTDDIIDVYRDTPELVSFLHLPVQSGSDRILTMMKRGHTAIEYKSIIRKL 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           ++VRP+I ISSDFIVGFPGET++DF  TM+L+ ++ +  +FSF YS R GTP ++  + V
Sbjct: 294 KAVRPNIQISSDFIVGFPGETEEDFEQTMNLIAQVNFDMSFSFIYSARPGTPAADYPDDV 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441
            E+ K +RL  LQ+++  Q   F+ A +G    VL+E   K+   +L GR+   + V   
Sbjct: 354 TEDEKKQRLYLLQQRINNQAAQFSRAMLGTEQRVLVEGPSKKDIMELTGRTENNRIVNFQ 413

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                IG  + ++ITDV  ++L GE+V
Sbjct: 414 GSPDMIGKFVDIKITDVFTNSLRGEVV 440


>gi|68248570|ref|YP_247682.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Haemophilus
           influenzae 86-028NP]
 gi|148825700|ref|YP_001290453.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Haemophilus
           influenzae PittEE]
 gi|229846938|ref|ZP_04467044.1| lipoyl synthase [Haemophilus influenzae 7P49H1]
 gi|81337003|sp|Q4QPM5|MIAB_HAEI8 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|229890550|sp|A5UBB9|MIAB_HAEIE RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|68056769|gb|AAX87022.1| conserved hypothetical protein [Haemophilus influenzae 86-028NP]
 gi|148715860|gb|ABQ98070.1| lipoyl synthase [Haemophilus influenzae PittEE]
 gi|229810022|gb|EEP45742.1| lipoyl synthase [Haemophilus influenzae 7P49H1]
          Length = 474

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 208/447 (46%), Positives = 296/447 (66%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           Q+  +K++GCQMN YDS +M D+  S  G E   + ++AD+++LNTC IREKA EKV+  
Sbjct: 3   QKLHIKTWGCQMNEYDSSKMADLLLSTHGLELTEAPEEADVLLLNTCSIREKAQEKVFHQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK    K   +L++ V GCVA  EGE I  R+P V+++ GPQT +RLPE++ + 
Sbjct: 63  LGRWKELK----KNNPNLVIGVGGCVASQEGEHIRHRAPYVDIIFGPQTLHRLPEMINQI 118

Query: 144 RFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           R GK  VVD  +   +KF+RL        R  G TAF++I EGC+K+CTFCVVPYTRG E
Sbjct: 119 RGGKSSVVDVSFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTFCVVPYTRGEE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR +  V+ E  +L + GV E+ LLGQNVNA+RG   DG+ C+F++LL  ++ I G+ R
Sbjct: 174 VSRPVDDVLFEIAQLAEQGVREVNLLGQNVNAYRGPTHDGQICSFAELLRLVASIDGIDR 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LR+TTSHP + ++ +I  + D   L+ +LHLPVQ+GSDR+L  M R HTA EY+ II ++
Sbjct: 234 LRFTTSHPIEFTNDIIDVYRDTPELVSFLHLPVQAGSDRVLTMMKRGHTALEYKSIIRKL 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+VRPDI ISSDFIVGFPGET +DF  TM+L+ ++ +  +FSF YS R GTP ++M + V
Sbjct: 294 RAVRPDIQISSDFIVGFPGETAEDFEQTMNLIAQVNFDMSFSFVYSARPGTPAADMPDDV 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441
            E+ K +RL  LQ+++ +Q   F+   +G    VL+E   K+   +L GR+   + V   
Sbjct: 354 TEDEKKQRLYVLQERINQQAAQFSRRMLGTEQRVLVEGPSKKDIMELTGRTETNRIVNFQ 413

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                IG  + V+ITDV  ++L GE+V
Sbjct: 414 GSPEMIGKFVDVKITDVYTNSLRGEVV 440


>gi|257465566|ref|ZP_05629937.1| hypothetical protein AM202_03575 [Actinobacillus minor 202]
 gi|257451226|gb|EEV25269.1| hypothetical protein AM202_03575 [Actinobacillus minor 202]
          Length = 475

 Score =  403 bits (1036), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 207/446 (46%), Positives = 297/446 (66%), Gaps = 12/446 (2%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +  + ++GCQMN YDS +M D+  S  G E  ++ +DAD+++LNTC IREKA EKV+S L
Sbjct: 3   KLHITTWGCQMNEYDSSKMADLLNSTHGLELTDNPEDADVLLLNTCSIREKAQEKVFSQL 62

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR +N K    K+  DL++ V GCVA  EGE I  R+P V++V GPQT +RLPE++ + R
Sbjct: 63  GRWKNWK----KDKPDLIIGVGGCVASQEGEHIRERAPFVDIVFGPQTLHRLPEMINQIR 118

Query: 145 FGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            GK  VVD  +   +KF+RL        R  G TAF++I EGC+K+C+FCVVPYTRG E+
Sbjct: 119 GGKSSVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCSFCVVPYTRGEEV 173

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR +  V+ E  +L   GV E+ LLGQNVNA+RG+  DG+ C+F++LL  ++ I G+ R+
Sbjct: 174 SRPVDDVLFEIAQLAAQGVREVNLLGQNVNAYRGETFDGQICSFAELLRLVAAIDGIDRV 233

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           RYTTSHP + +D +I+ + D   L+ +LHLP+QSGSDR+L  M R HTA EY+ II ++R
Sbjct: 234 RYTTSHPIEFTDDIIEVYKDTPELVSFLHLPIQSGSDRVLTMMKRNHTALEYKAIIRKLR 293

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
             RPDI ISSDFIVGFPGET +DF  TM +++++ +  +FSF YS R GTP +++ + V 
Sbjct: 294 EARPDIQISSDFIVGFPGETAEDFEQTMKVIEQVNFDMSFSFIYSARPGTPAADLPDDVT 353

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNS 442
           E+ K ERL  LQ+++  Q + F+ A +G    +L+E   K+   +L GR+   + V    
Sbjct: 354 EDEKKERLYRLQQRINNQAMQFSRAMLGTEQRILVEGPSKKDIMELTGRTENNRIVNFQG 413

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
               IG  + V+ITDV  ++L G++V
Sbjct: 414 TPDMIGKFVDVKITDVYTNSLRGDVV 439


>gi|308050552|ref|YP_003914118.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Ferrimonas balearica DSM
           9799]
 gi|307632742|gb|ADN77044.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Ferrimonas balearica DSM
           9799]
          Length = 476

 Score =  403 bits (1035), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 211/447 (47%), Positives = 295/447 (65%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS +M D+  +  GY      ++AD+++LNTC IREKA EKV+  
Sbjct: 3   KKLHIKTWGCQMNEYDSAKMADLLDAFGGYTLTEEAEEADVLLLNTCSIREKAQEKVFHQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR R LK    ++   L++ V GCVA  EG+ I  R+P V++V GPQT +RLPE++ + 
Sbjct: 63  LGRWRPLK----EQNPALVIGVGGCVASQEGDAIRERAPYVDIVFGPQTLHRLPEMIGKI 118

Query: 144 RFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           + G++ VVD  +   +KF+RL        R  G TAF++I EGC+K+C+FCVVPYTRG E
Sbjct: 119 QAGEKGVVDVSFPEIEKFDRLP-----EPRAEGATAFVSIMEGCNKYCSFCVVPYTRGEE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR L  V+ E  +L + GV EI LLGQNVNA+RG+  DGE C FSDLL  ++ I G+ R
Sbjct: 174 VSRPLDDVLYEIAQLAEQGVREINLLGQNVNAYRGETHDGEICRFSDLLRYVAAIDGIDR 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LRYTTSHP + +  +I A+ D+  L+ +LHLPVQSGSDRIL  M R HTA E++ II R+
Sbjct: 234 LRYTTSHPVEFTQDIIDAYADVPELVDFLHLPVQSGSDRILTMMKRNHTALEFKSIIRRL 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R VRP+I ISSDFIVGFP ETD+DF  TM L+  I + Q+FSF YSPR GTP ++M++ V
Sbjct: 294 RKVRPNIHISSDFIVGFPNETDEDFEDTMKLIADIEFDQSFSFIYSPRPGTPAADMVDDV 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLVGRSPWLQSVVLN 441
            E  K +RL  LQ ++ +Q + F+   +G +  +L+E   K+   +L GR+   + V  +
Sbjct: 354 SEETKKQRLYILQDRINQQAMQFSRRMLGTVQRILVEGVSKKNAMELRGRTENNRVVNFD 413

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                IG  + V IT+V   +L G L+
Sbjct: 414 GDVELIGGFVDVEITEVLPHSLRGTLI 440


>gi|58697143|ref|ZP_00372571.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Wolbachia endosymbiont of
           Drosophila simulans]
 gi|58536553|gb|EAL59910.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Wolbachia endosymbiont of
           Drosophila simulans]
          Length = 384

 Score =  403 bits (1035), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 202/388 (52%), Positives = 275/388 (70%), Gaps = 13/388 (3%)

Query: 81  YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140
           YS LG+I +L+        ++ +VVAGCVAQAEGEE+ RR+P V++VVGPQ+   LPEL+
Sbjct: 3   YSELGKIHSLRK-------EMTIVVAGCVAQAEGEEVFRRAPFVDIVVGPQSIATLPELI 55

Query: 141 ERARFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
            +A   K  V++TD+    KF++L   D  Y   +G +AFL IQEGCDKFCTFCVVPYTR
Sbjct: 56  VKASRSKGHVINTDFPEVAKFDKLP--DECYGNSQGSSAFLAIQEGCDKFCTFCVVPYTR 113

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G E SR ++++  EA KL+ NG  EI LLGQNVNA+ G+  +GE      L+  +++I+ 
Sbjct: 114 GAEYSRPVNEIFREALKLVANGANEINLLGQNVNAYHGE-CEGEVWDLGKLISHIAKIEK 172

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           L R+RYTTSHPRDM + L  AH +   LMP++HLPVQSGS++IL +MNR+HTA EY +II
Sbjct: 173 LERIRYTTSHPRDMHESLYLAHAEEPKLMPFVHLPVQSGSNKILHAMNRKHTAEEYLEII 232

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
           DR R ++P+I  SSDFIVGFPGET+ DF  TM LV+K+ YAQA+SFKYSPR GTPG+   
Sbjct: 233 DRFRKLKPEIEFSSDFIVGFPGETEKDFEETMKLVEKVRYAQAYSFKYSPRPGTPGAERK 292

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKGKLVGRSPWLQSV 438
           +QV E VK ERLL LQK + +QQ+ FN + VG+ I VL  +K GK + +++G+SP++QSV
Sbjct: 293 DQVPEEVKTERLLRLQKLISKQQLEFNQSMVGKTIPVLFSDKKGKHQNQIIGKSPYMQSV 352

Query: 439 VLNSKNHNIGD-IIKVRITDVKISTLYG 465
            ++       D I+ V++ + + S+L G
Sbjct: 353 CIDDSEDKYRDKIVNVKVLEARQSSLLG 380


>gi|33151471|ref|NP_872824.1| hypothetical protein HD0226 [Haemophilus ducreyi 35000HP]
 gi|81423890|sp|Q7VP74|MIAB_HAEDU RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|33147691|gb|AAP95213.1| conserved hypothetical protein [Haemophilus ducreyi 35000HP]
          Length = 475

 Score =  402 bits (1033), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 205/446 (45%), Positives = 298/446 (66%), Gaps = 12/446 (2%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +  + ++GCQMN YDS +M D+  S  G E  +  ++AD+++LNTC IREKA EKV+S L
Sbjct: 3   KLHITTWGCQMNEYDSSKMADLLNSTHGLELTDKPEEADILLLNTCSIREKAQEKVFSQL 62

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR +N K    K+  DL++ V GCVA  EGE I  R+P V++V GPQT +RLPE++ + R
Sbjct: 63  GRWKNWK----KDKPDLIIGVGGCVASQEGEHIRERAPFVDIVFGPQTLHRLPEMINQIR 118

Query: 145 FGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            G R VVD  +   +KF+RL        +  G TAF++I EGC+K+C+FCVVPYTRG E+
Sbjct: 119 SGDRAVVDISFPEIEKFDRLP-----EPKAEGPTAFVSIMEGCNKYCSFCVVPYTRGEEV 173

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR +  V+ E  +L + GV E+ LLGQNVNA+RG+  DG  CTF++LL  ++ I G+ RL
Sbjct: 174 SRPVDDVLFEIAQLAEQGVREVNLLGQNVNAYRGETFDGGICTFAELLRLVAAIDGIDRL 233

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           RYTTSHP + +D +I+ + D   L+ +LHLP+QSG+DR+L  M R HTA EY+ II ++R
Sbjct: 234 RYTTSHPIEFTDDIIEVYRDTPELVSFLHLPIQSGADRVLTMMKRNHTALEYKAIIRKLR 293

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           +VRP+I ISSDFIVGFPGET +DF  TM +++++ +  +FSF YS R GTP S++ + V 
Sbjct: 294 AVRPNIQISSDFIVGFPGETAEDFEQTMKIIEQVNFDMSFSFIYSARPGTPASDLPDDVS 353

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNS 442
           EN K +RL  LQ+++  Q + F+   +G    +L+E   K+   +L GR+   + V    
Sbjct: 354 ENEKKDRLAHLQQRINHQAMQFSRLMLGTEQRILVEGPSKKDIMELTGRTETNRVVNFIG 413

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
             + IG  + ++ITDV  ++L GE++
Sbjct: 414 TPNMIGKFVDIKITDVYSNSLRGEVI 439


>gi|240948129|ref|ZP_04752539.1| hypothetical protein AM305_05003 [Actinobacillus minor NM305]
 gi|240297609|gb|EER48101.1| hypothetical protein AM305_05003 [Actinobacillus minor NM305]
          Length = 475

 Score =  402 bits (1033), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 206/446 (46%), Positives = 297/446 (66%), Gaps = 12/446 (2%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +  + ++GCQMN YDS +M D+  S  G E  ++ ++AD+++LNTC IREKA EKV+S L
Sbjct: 3   KLHITTWGCQMNEYDSSKMADLLNSTHGLELTDNPEEADVLLLNTCSIREKAQEKVFSQL 62

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR +N K    K+  DL++ V GCVA  EGE I  R+P V++V GPQT +RLPE++ + R
Sbjct: 63  GRWKNWK----KDKPDLIIGVGGCVASQEGEHIRERAPFVDIVFGPQTLHRLPEMINQIR 118

Query: 145 FGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            GK  VVD  +   +KF+RL        R  G TAF++I EGC+K+C+FCVVPYTRG E+
Sbjct: 119 GGKSSVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCSFCVVPYTRGEEV 173

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR +  V+ E  +L   GV E+ LLGQNVNA+RG+  DG+ C+F++LL  ++ I G+ R+
Sbjct: 174 SRPVDDVLFEIAQLAAQGVREVNLLGQNVNAYRGETFDGQICSFAELLRLVAAIDGIDRV 233

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           RYTTSHP + +D +I+ + D   L+ +LHLP+QSGSDR+L  M R HTA EY+ II ++R
Sbjct: 234 RYTTSHPIEFTDDIIEVYKDTPELVSFLHLPIQSGSDRVLTMMKRNHTALEYKAIIRKLR 293

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
             RPDI ISSDFIVGFPGET +DF  TM +++++ +  +FSF YS R GTP +++ + V 
Sbjct: 294 EARPDIQISSDFIVGFPGETAEDFEQTMKIIEQVNFDMSFSFIYSARPGTPAADLPDDVT 353

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNS 442
           E+ K ERL  LQ+++  Q + F+ A +G    +L+E   K+   +L GR+   + V    
Sbjct: 354 EDEKKERLYRLQQRINNQAMQFSRAMLGTEQRILVEGPSKKDIMELTGRTENNRIVNFQG 413

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
               IG  + V+ITDV  ++L G++V
Sbjct: 414 TPDMIGKFVDVKITDVYTNSLRGDVV 439


>gi|113461298|ref|YP_719367.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Haemophilus
           somnus 129PT]
 gi|170717832|ref|YP_001784892.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Haemophilus
           somnus 2336]
 gi|123132137|sp|Q0I3Z1|MIAB_HAES1 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|229890552|sp|B0UUU9|MIAB_HAES2 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|112823341|gb|ABI25430.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Haemophilus somnus 129PT]
 gi|168825961|gb|ACA31332.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Haemophilus somnus 2336]
          Length = 474

 Score =  402 bits (1032), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 208/447 (46%), Positives = 294/447 (65%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           Q+  +K++GCQMN YDS +M D+   + G E  +  ++AD+++LNTC IREKA EKV+  
Sbjct: 3   QKLHIKTWGCQMNEYDSSKMADLLLNTHGLELTDVPEEADVLLLNTCSIREKAQEKVFHQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK    K+   L++ V GCVA  EGE I  R+P V++V GPQT +RLPE++ + 
Sbjct: 63  LGRWKELK----KQNPSLVIGVGGCVASQEGEHIRSRAPYVDIVFGPQTLHRLPEMINQI 118

Query: 144 RFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           R GK  VVD  +   +KF+RL        R  G TAF++I EGC+K+C+FCVVPYTRG E
Sbjct: 119 RGGKSAVVDVSFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCSFCVVPYTRGEE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR +  V+ E  +L + GV E+ LLGQNVNA+RG   DG  C+F++LL  ++ I G+ R
Sbjct: 174 VSRPVDDVLFEIAQLAEQGVREVNLLGQNVNAYRGPTHDGGICSFAELLRLVASIDGIDR 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LR+TTSHP + +D +I  + D   L+ +LHLPVQSGSDR+L  M R HTA EY+ II ++
Sbjct: 234 LRFTTSHPIEFTDDIIDVYADTPELVSFLHLPVQSGSDRVLNLMKRNHTALEYKSIIRKL 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           + VRP+I ISSDFIVGFPGETD DF  TM+L+ ++ +  +FSF YS R GTP ++M + V
Sbjct: 294 KKVRPNIQISSDFIVGFPGETDQDFEDTMNLIAQVNFDMSFSFIYSARPGTPAADMPDDV 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441
            E  K +RL  LQ+++  Q   F+ A +G    VL+E   K+   +L GR+   + V   
Sbjct: 354 TEEEKKQRLYLLQQRINNQAAQFSRAMLGTEQRVLVEGPSKKDIMELTGRTETNRIVNFA 413

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
              + IG  + ++ITDV  ++L GE+V
Sbjct: 414 GTPNMIGKFVDIKITDVYTNSLRGEVV 440


>gi|261492918|ref|ZP_05989464.1| 2-methylthioadenine synthase [Mannheimia haemolytica serotype A2
           str. BOVINE]
 gi|261311459|gb|EEY12616.1| 2-methylthioadenine synthase [Mannheimia haemolytica serotype A2
           str. BOVINE]
          Length = 475

 Score =  400 bits (1027), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 205/446 (45%), Positives = 298/446 (66%), Gaps = 12/446 (2%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +  + ++GCQMN YDS +M D+  S  G+E   + +DAD+++LNTC IREKA EKV+S L
Sbjct: 3   KLHITTWGCQMNEYDSSKMADLLNSTHGFELTENPEDADVLLLNTCSIREKAQEKVFSQL 62

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR +N K    K+  +L++ V GCVA  EGE I  R+P V++V GPQT +RLPE++ + R
Sbjct: 63  GRWKNWK----KDKPNLIIGVGGCVASQEGEHIRDRAPYVDIVFGPQTLHRLPEMINQIR 118

Query: 145 FGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            GK  +VD  +   +KF+RL        +  G TAF++I EGC+K+C+FCVVPYTRG E+
Sbjct: 119 GGKSSIVDISFPEIEKFDRLP-----EPKAEGPTAFVSIMEGCNKYCSFCVVPYTRGEEV 173

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR +  V+ E  +L   GV E+ LLGQNVNA+RG+  DG  CTF++LL  ++ I G+ RL
Sbjct: 174 SRPVDDVLFEIAQLAAQGVREVNLLGQNVNAYRGETFDGGICTFAELLRLVAAIDGIDRL 233

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           RYTTSHP + +D +I+ + D   L+ +LHLP+QSGSDR+L  M R HTA EY+ II ++R
Sbjct: 234 RYTTSHPIEFTDDIIEVYRDTPELVSFLHLPIQSGSDRVLTMMKRNHTALEYKAIIRKLR 293

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           +VRP+I ISSDFIVGFPGET +DF  TM +++++ +  +FSF YS R GTP +++ + V 
Sbjct: 294 AVRPEIQISSDFIVGFPGETAEDFEQTMKVIEQVNFDMSFSFIYSARPGTPAADLPDNVS 353

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNS 442
           ++ K ERL  LQ+++  Q + F+ A +G    +L+E   K+   +L GR+   + V    
Sbjct: 354 DDEKKERLSRLQQRINHQAMQFSRAMLGTEQRILVEGPSKKDLMELTGRTETNRVVNFVG 413

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
               IG  + V+ITDV  ++L GE++
Sbjct: 414 TPDMIGKFVDVKITDVYTNSLRGEVI 439


>gi|254362260|ref|ZP_04978374.1| 2-methylthioadenine synthase [Mannheimia haemolytica PHL213]
 gi|261496732|ref|ZP_05993107.1| 2-methylthioadenine synthase [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|153093835|gb|EDN74770.1| 2-methylthioadenine synthase [Mannheimia haemolytica PHL213]
 gi|261307571|gb|EEY08899.1| 2-methylthioadenine synthase [Mannheimia haemolytica serotype A2
           str. OVINE]
          Length = 475

 Score =  399 bits (1026), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 205/446 (45%), Positives = 298/446 (66%), Gaps = 12/446 (2%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +  + ++GCQMN YDS +M D+  S  G+E   + +DAD+++LNTC IREKA EKV+S L
Sbjct: 3   KLHITTWGCQMNEYDSSKMADLLNSTHGFELTENPEDADVLLLNTCSIREKAQEKVFSQL 62

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR +N K    K+  +L++ V GCVA  EGE I  R+P V++V GPQT +RLPE++ + R
Sbjct: 63  GRWKNWK----KDKPNLIIGVGGCVASQEGEHIRDRAPYVDIVFGPQTLHRLPEMINQIR 118

Query: 145 FGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            GK  +VD  +   +KF+RL        +  G TAF++I EGC+K+C+FCVVPYTRG E+
Sbjct: 119 GGKSSIVDISFPEIEKFDRLP-----EPKAEGPTAFVSIMEGCNKYCSFCVVPYTRGEEV 173

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR +  V+ E  +L   GV E+ LLGQNVNA+RG+  DG  CTF++LL  ++ I G+ RL
Sbjct: 174 SRPVDDVLFEIAQLAAQGVREVNLLGQNVNAYRGETFDGGICTFAELLRLVAAIDGIDRL 233

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           RYTTSHP + +D +I+ + D   L+ +LHLP+QSGSDR+L  M R HTA EY+ II ++R
Sbjct: 234 RYTTSHPIEFTDDIIEVYRDTPELVSFLHLPIQSGSDRVLTMMKRNHTALEYKAIIRKLR 293

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           +VRP+I ISSDFIVGFPGET +DF  TM +++++ +  +FSF YS R GTP +++ + V 
Sbjct: 294 AVRPEIQISSDFIVGFPGETAEDFEQTMKVIEQVNFDMSFSFIYSARPGTPAADLPDNVS 353

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNS 442
           ++ K ERL  LQ+++  Q + F+ A +G    +L+E   K+   +L GR+   + V    
Sbjct: 354 DDEKKERLSRLQQRINHQAMQFSRAMLGTEQRILVEGPSKKDLMELTGRTETNRVVNFVG 413

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
               IG  + V+ITDV  ++L GE++
Sbjct: 414 TPDMIGKFVDVKITDVYTNSLRGEVI 439


>gi|322513853|ref|ZP_08066934.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Actinobacillus ureae ATCC
           25976]
 gi|322120315|gb|EFX92257.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Actinobacillus ureae ATCC
           25976]
          Length = 475

 Score =  399 bits (1026), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 204/446 (45%), Positives = 296/446 (66%), Gaps = 12/446 (2%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +  + ++GCQMN YDS +M D+  S  G E  N  ++AD+++LNTC IREKA EKV+S L
Sbjct: 3   KLHITTWGCQMNEYDSSKMADLLNSTHGLELTNKPEEADVLLLNTCSIREKAQEKVFSQL 62

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR +N K    K+  +L++ V GCVA  EGE I  R+P V++V GPQT +RLPE++ + R
Sbjct: 63  GRWKNWK----KDKPELIIGVGGCVASQEGEHIRERAPFVDIVFGPQTLHRLPEMINKIR 118

Query: 145 FGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            G R +VD  +   +KF+RL        R  G TAF++I EGC+K+C+FCVVPYTRG E+
Sbjct: 119 GGDRAIVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCSFCVVPYTRGEEV 173

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR +  V+ E  +L + GV E+ LLGQNVNA+RG+  DG  CTF++LL  ++ I G+ R+
Sbjct: 174 SRPVDDVLFEIAQLAEQGVREVNLLGQNVNAYRGETFDGGICTFAELLRLVAAIDGIDRV 233

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           RYTTSHP + +D +I+ + D   L+ +LHLP+QSG+DR+L  M R HTA EY+ II ++R
Sbjct: 234 RYTTSHPIEFTDDIIEVYRDTPELVSFLHLPIQSGADRVLTMMKRNHTALEYKAIIRKLR 293

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
            VRP+I ISSDFIVGFPGET +DF  TM +++++ +  +FSF YS R GTP +++ + + 
Sbjct: 294 EVRPNIQISSDFIVGFPGETAEDFEQTMKVIEQVNFDMSFSFIYSARPGTPAADLPDDIS 353

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNS 442
           E  K ERL  LQ+++  Q + F+ A +G    VL+E   K+   +L GR+   + V    
Sbjct: 354 EEEKKERLARLQQRINHQAMQFSRAMLGTEQRVLVEGPSKKDIMELTGRTENNRIVNFQG 413

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
               IG  + ++ITDV  ++L G++V
Sbjct: 414 IPDMIGKFVDIKITDVYTNSLRGDVV 439


>gi|32034173|ref|ZP_00134395.1| COG0621: 2-methylthioadenine synthetase [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|126208789|ref|YP_001054014.1| hypothetical protein APL_1325 [Actinobacillus pleuropneumoniae L20]
 gi|190150645|ref|YP_001969170.1| hypothetical protein APP7_1376 [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|307263992|ref|ZP_07545593.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Actinobacillus pleuropneumoniae serovar 13 str. N273]
 gi|229890417|sp|A3N1X3|MIAB_ACTP2 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|229890418|sp|B3GYA4|MIAB_ACTP7 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|126097581|gb|ABN74409.1| hypothetical protein APL_1325 [Actinobacillus pleuropneumoniae
           serovar 5b str. L20]
 gi|189915776|gb|ACE62028.1| hypothetical protein APP7_1376 [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|306870681|gb|EFN02424.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Actinobacillus pleuropneumoniae serovar 13 str. N273]
          Length = 475

 Score =  399 bits (1026), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 204/446 (45%), Positives = 296/446 (66%), Gaps = 12/446 (2%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +  + ++GCQMN YDS +M D+  S  G E  +  ++AD+++LNTC IREKA EKV+S L
Sbjct: 3   KLHITTWGCQMNEYDSSKMADLLNSTHGLELTDKPEEADVLLLNTCSIREKAQEKVFSQL 62

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR +N K    K+  DL++ V GCVA  EGE I  R+P V++V GPQT +RLPE++ + R
Sbjct: 63  GRWKNWK----KDKPDLIIGVGGCVASQEGEHIRDRAPFVDIVFGPQTLHRLPEMINKIR 118

Query: 145 FGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            G R +VD  +   +KF+RL        R  G TAF++I EGC+K+C+FCVVPYTRG E+
Sbjct: 119 GGDRAIVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCSFCVVPYTRGEEV 173

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR +  V+ E  +L + GV E+ LLGQNVNA+RG+  DG  CTF++LL  ++ I G+ R+
Sbjct: 174 SRPVDDVLFEIAQLAEQGVREVNLLGQNVNAYRGETFDGGICTFAELLRLVAAIDGIDRV 233

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           RYTTSHP + +D +I+ + D   L+ +LHLP+QSG+DR+L  M R HTA EY+ II ++R
Sbjct: 234 RYTTSHPIEFTDDIIEVYRDTPELVSFLHLPIQSGADRVLTMMKRNHTALEYKAIIRKLR 293

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
            VRP+I ISSDFIVGFPGET +DF  TM +++++ +  +FSF YS R GTP +++ + + 
Sbjct: 294 EVRPNIQISSDFIVGFPGETAEDFEQTMKVIEQVNFDMSFSFIYSARPGTPAADLPDDIS 353

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNS 442
           E  K ERL  LQ+++  Q + F+ A +G    VL+E   K+   +L GR+   + V    
Sbjct: 354 EEEKKERLARLQQRINHQAMQFSRAMLGTEQRVLVEGPSKKDIMELTGRTENNRIVNFQG 413

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
               IG  + ++ITDV  ++L G++V
Sbjct: 414 TPDMIGKFVDIKITDVYTNSLRGDVV 439


>gi|152979606|ref|YP_001345235.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Actinobacillus
           succinogenes 130Z]
 gi|229890491|sp|A6VQQ3|MIAB_ACTSZ RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|150841329|gb|ABR75300.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Actinobacillus
           succinogenes 130Z]
          Length = 474

 Score =  399 bits (1026), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 208/447 (46%), Positives = 290/447 (64%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           Q+  +K++GCQMN YDS ++ D+  S  G E     + AD+++LNTC IREKA EKV+S 
Sbjct: 3   QKLHIKTWGCQMNEYDSAKIADLLLSTHGLELTEEAEQADVLLLNTCSIREKAQEKVFSQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR +  KN    E   L++ V GCVA  EGE I  R+P V+++ GPQT +RLPE++ + 
Sbjct: 63  LGRWKTWKN----EKPGLIIGVGGCVASQEGEHIRERAPFVDIIFGPQTLHRLPEMINQI 118

Query: 144 RFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           R GK  VVD  +   +KF+ L        +  G TAF++I EGC+K+CT+CVVPYTRG E
Sbjct: 119 RGGKSSVVDVSFPEIEKFDCLP-----EPKAEGPTAFVSIMEGCNKYCTYCVVPYTRGEE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR L  V+ E  +L D GV EI LLGQNVNA+RG   DG  CTF++LL  ++ I G+ R
Sbjct: 174 VSRPLDDVLFEVAQLADQGVREINLLGQNVNAYRGPTHDGGICTFAELLRLVASIDGIDR 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LR+TTSHP + +D +I  + D   L+ +LHLPVQSG+DRIL  M R HTA EY+ II ++
Sbjct: 234 LRFTTSHPIEFTDDIIDVYADTPELVSFLHLPVQSGADRILTMMKRGHTALEYKSIIRKL 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R VRPDI ISSDFIVGFPGET+++F  TM+L+  + +  +FSF YS R GTP ++M + V
Sbjct: 294 RKVRPDIQISSDFIVGFPGETNEEFEQTMNLIADVNFDMSFSFVYSARPGTPAADMPDDV 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441
            E  K +RL  LQ+++  Q   F+ A +G    VL+E   K+   +L GR+   + V   
Sbjct: 354 SEEEKKQRLYLLQQRINNQAAKFSRAMLGTEQRVLVEGPSKKDIMELTGRTENNRIVNFK 413

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                IG  + ++ITDV  ++L G+++
Sbjct: 414 GTPDMIGKFVDIQITDVFTNSLRGDVI 440


>gi|254516558|ref|ZP_05128617.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [gamma proteobacterium
           NOR5-3]
 gi|219674981|gb|EED31348.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [gamma proteobacterium
           NOR5-3]
          Length = 446

 Score =  399 bits (1025), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 208/448 (46%), Positives = 297/448 (66%), Gaps = 13/448 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ FVK++GCQMN YDS R++D+   S G E  +  +DAD+I+LNTC IREKA EKV+  
Sbjct: 3   KKVFVKTHGCQMNEYDSARIQDLLVDSHGLEPTDREEDADVILLNTCSIREKAQEKVFHQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR R LK    ++  +L++ V GCVA  EG EI +R+P V++V GPQT +RLPE+LE  
Sbjct: 63  LGRWRPLK----QKNPNLIIGVGGCVASQEGAEIGKRAPFVDLVFGPQTLHRLPEMLEER 118

Query: 144 R-FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           R  G  VVD  +   +KF+RL           G TAF++I EGC K+C+FCVVPYTRG E
Sbjct: 119 RDTGNLVVDISFPEIEKFDRLP-----EPSVEGPTAFVSIMEGCSKYCSFCVVPYTRGEE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR L  V+ E   L   GV E+ LLGQNVNA+RG   +G+   F++LL+ ++ I G+ R
Sbjct: 174 VSRPLDDVIAEVAGLAARGVREVNLLGQNVNAYRGDNHEGDVVDFAELLHFVAAIPGIDR 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +RYTTSHP + S+ LI+A+ ++  L+ +LHLPVQ+GSDRIL +M R HT  EY+  I ++
Sbjct: 234 IRYTTSHPVEFSEALIQAYAEIPELVDHLHLPVQAGSDRILAAMKRGHTVLEYKSKIRKL 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R++RP+I++SSDFI+GFPGET+ DF ATM L+D IG+  +FSF YS R GTP +++ +  
Sbjct: 294 RTIRPNISMSSDFIIGFPGETEADFAATMKLIDDIGFDASFSFIYSARPGTPAADLKDDT 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLN 441
           DE+ K  RL  LQ ++ +Q  + +   VG    +LI     K+ G+L GR+   + V  +
Sbjct: 354 DEDTKKSRLHILQARINQQAQAISRNMVGTRQRILITGPSRKDPGQLQGRTENNRVVNFS 413

Query: 442 SKNHN-IGDIIKVRITDVKISTLYGELV 468
           + +H  IG  + V I +   ++L GEL+
Sbjct: 414 ATDHGLIGQFVDVTIGEALPNSLRGELI 441


>gi|315634739|ref|ZP_07890023.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Aggregatibacter segnis
           ATCC 33393]
 gi|315476687|gb|EFU67435.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Aggregatibacter segnis
           ATCC 33393]
          Length = 474

 Score =  399 bits (1024), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 208/447 (46%), Positives = 293/447 (65%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           Q+  +K++GCQMN YDS +M D+  S  G E     ++AD+++LNTC IREKA EKV+  
Sbjct: 3   QKLHIKTWGCQMNEYDSSKMADLLHSTHGLELTEVPEEADVLLLNTCSIREKAQEKVFHQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK    K   +LL+ V GCVA  EGE I  R+P V++V GPQT +RLPE++ + 
Sbjct: 63  LGRWKELK----KNNPNLLIGVGGCVASQEGEHIRTRAPYVDIVFGPQTLHRLPEMINQI 118

Query: 144 RFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           R GK  VVD  +   +KF+ L        R  G TAF++I EGC+K+CT+CVVPYTRG E
Sbjct: 119 RGGKSSVVDISFPEIEKFDCLP-----EPRAEGPTAFVSIMEGCNKYCTYCVVPYTRGEE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR +  ++ E  +L   GV E+ LLGQNVNA+RG   DGE CTF++LL  ++ I G+ R
Sbjct: 174 VSRPVDDILFEIAQLAAQGVREVNLLGQNVNAYRGPTFDGEICTFAELLRLVAAIDGIDR 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LR+TTSHP + +D +I  + D   L+ +LHLPVQSGSDR+L  M R HTA EY+ II ++
Sbjct: 234 LRFTTSHPIEFTDDIIDVYRDTPELVSFLHLPVQSGSDRVLTMMKRGHTALEYKSIIRKL 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           ++VRP+I ISSDFIVGFPGET++DF  TM+L+ ++ +  +FSF YS R GTP ++  + V
Sbjct: 294 KAVRPNIQISSDFIVGFPGETNEDFEQTMNLIAQVNFDMSFSFIYSARPGTPAADYPDDV 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441
            E+ K +RL  LQ+++  Q   F+ A +G    VL+E   K+   +L GR+   + V   
Sbjct: 354 TEDEKKQRLYLLQQRINNQAAQFSRAMLGTEQRVLVEGPSKKDIMELTGRTETNRIVNFQ 413

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                IG  + ++ITDV  ++L GE+V
Sbjct: 414 GSPEMIGKFVDIKITDVFTNSLRGEVV 440


>gi|307248353|ref|ZP_07530376.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Actinobacillus pleuropneumoniae serovar 2 str. S1536]
 gi|307250579|ref|ZP_07532521.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Actinobacillus pleuropneumoniae serovar 4 str. M62]
 gi|307252960|ref|ZP_07534848.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
 gi|307261809|ref|ZP_07543475.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Actinobacillus pleuropneumoniae serovar 12 str. 1096]
 gi|229890699|sp|B0BQR0|MIAB_ACTPJ RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|306855091|gb|EFM87271.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Actinobacillus pleuropneumoniae serovar 2 str. S1536]
 gi|306857395|gb|EFM89509.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Actinobacillus pleuropneumoniae serovar 4 str. M62]
 gi|306859598|gb|EFM91623.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
 gi|306868627|gb|EFN00438.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Actinobacillus pleuropneumoniae serovar 12 str. 1096]
          Length = 475

 Score =  399 bits (1024), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 204/446 (45%), Positives = 295/446 (66%), Gaps = 12/446 (2%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +  + ++GCQMN YDS +M D+  S  G E  +  ++AD+++LNTC IREKA EKV+S L
Sbjct: 3   KLHITTWGCQMNEYDSSKMADLLNSTHGLELTDKPEEADVLLLNTCSIREKAQEKVFSQL 62

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR +N K    K+  DL++ V GCVA  EGE I  R+P V++V GPQT +RLPE++ + R
Sbjct: 63  GRWKNWK----KDKPDLIIGVGGCVASQEGEHIRDRAPFVDIVFGPQTLHRLPEMINKIR 118

Query: 145 FGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            G R +VD  +   +KF+RL        R  G TAF++I EGC+K+C+FCVVPYTRG E+
Sbjct: 119 GGDRAIVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCSFCVVPYTRGEEV 173

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR +  V+ E  +L + GV E+ LLGQNVNA+RG+  DG  CTF++LL  ++ I G+ R+
Sbjct: 174 SRPVDDVLFEIAQLAEQGVREVNLLGQNVNAYRGETFDGGICTFAELLRLVAAIDGIDRV 233

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           RYTTSHP + +D +I+ + D   L+ +LHLP+QSG+DR+L  M R HTA EY+ II ++R
Sbjct: 234 RYTTSHPIEFTDDIIEVYRDTPELVSFLHLPIQSGADRVLTMMKRNHTALEYKAIIRKLR 293

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
            VRP+I ISSDFIVGFPGET +DF  TM +++++ +  +FSF YS R GTP +++ + + 
Sbjct: 294 EVRPNIQISSDFIVGFPGETAEDFEQTMKVIEQVNFDMSFSFIYSARPGTPAADLPDDIS 353

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNS 442
           E  K  RL  LQ+++  Q + F+ A +G    VL+E   K+   +L GR+   + V    
Sbjct: 354 EEEKKARLARLQQRINHQAMQFSRAMLGTEQRVLVEGPSKKDIMELTGRTENNRIVNFQG 413

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
               IG  + ++ITDV  ++L GE+V
Sbjct: 414 TPDMIGKFVDIKITDVYTNSLRGEVV 439


>gi|325578752|ref|ZP_08148799.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Haemophilus
           parainfluenzae ATCC 33392]
 gi|325159576|gb|EGC71708.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Haemophilus
           parainfluenzae ATCC 33392]
          Length = 474

 Score =  398 bits (1023), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 207/447 (46%), Positives = 295/447 (65%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           Q+  +K++GCQMN YDS +M D+   + G E  +  ++AD+++LNTC IREKA EKV+  
Sbjct: 3   QKLHIKTWGCQMNEYDSSKMADLLLNTHGLELTDIPEEADVLLLNTCSIREKAQEKVFHQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK    K+  +L++ V GCVA  EGE I  R+P V++V GPQT +RLPE++ + 
Sbjct: 63  LGRWKELK----KQNPNLVIGVGGCVASQEGEHIRHRAPYVDIVFGPQTLHRLPEMINQI 118

Query: 144 RFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           R GK  VVD  +   +KF+RL        R  G TAF++I EGC+K+CT+CVVPYTRG E
Sbjct: 119 RGGKSSVVDVSFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTYCVVPYTRGEE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR +  V+ E  +L D GV EI LLGQNVNA+RG   DG  CTF++LL  ++ I G+ R
Sbjct: 174 VSRPVDDVLFEIAQLADQGVREINLLGQNVNAYRGPTFDGGICTFAELLRLVASIDGIDR 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LR+TTSHP + +D +I  + D   L+ ++HLPVQ+GSDRIL  M R HTA EY+ II ++
Sbjct: 234 LRFTTSHPIEFTDDIIDVYRDTPELVDFVHLPVQAGSDRILTMMKRGHTALEYKSIIRKL 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+VRP+I ISSDFIVGFPGET ++F  TM+L+ ++ +  +FSF YS R GTP ++M + V
Sbjct: 294 RAVRPNIQISSDFIVGFPGETKEEFEQTMNLIAQVNFDMSFSFIYSARPGTPAADMPDDV 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441
            E  K +RL  LQ+++ +Q   ++   +G    VL+E   K+   +L GR+   + V   
Sbjct: 354 SEEEKKQRLYLLQERINQQAAQYSRRMLGTEQRVLVEGPSKKDIMELTGRTENNRIVNFQ 413

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                IG  + ++ITDV  ++L GE+V
Sbjct: 414 GSPDMIGKFVDIKITDVYTNSLRGEVV 440


>gi|229890691|sp|Q0ABN9|MIAB_ALHEH RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
          Length = 448

 Score =  398 bits (1023), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 209/446 (46%), Positives = 297/446 (66%), Gaps = 13/446 (2%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQ-GYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           R +VK++GCQMN YDS +M D+   + GY RV+S  DAD+I+LNTC +REKA EKV+S L
Sbjct: 4   RVYVKTHGCQMNEYDSDKMADVLVKERGYTRVDSPGDADVILLNTCSVREKAQEKVFSEL 63

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR ++ K    + G   ++ V GCVA  EGE I++R+P V+VV GPQT +RLPE+++RAR
Sbjct: 64  GRWKDYKT---RNGA--VIGVGGCVASQEGEAIVQRAPHVDVVFGPQTLHRLPEMIDRAR 118

Query: 145 FGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            G R VVD  +   +KF+RL        R  G TAF++I EGC K+C+FCVVPYTRG EI
Sbjct: 119 DGGRSVVDVSFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCSKYCSFCVVPYTRGEEI 173

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR    V+ E   L + GV E+TLLGQNVNA+RG   DG  C  + L++ ++ + G+ R+
Sbjct: 174 SRPFEDVIAEVASLAEQGVREVTLLGQNVNAYRGPMADGTVCDLALLIHYVAALDGIGRI 233

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+TTSHP + SD LI+A+ +   L  +LHLPVQSGSD +LK M R HTA EY   I+RI+
Sbjct: 234 RFTTSHPVEFSDSLIEAYREEPKLAGHLHLPVQSGSDLVLKLMKRGHTAAEYLDKIERIK 293

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           + RP I+I+SDFIVG+PGE++ DF  T+ L++ +G+ Q+FSF YSPR GTP +++ +   
Sbjct: 294 AARPGISIASDFIVGYPGESEADFEDTLRLIEAVGFDQSFSFLYSPRPGTPAASLSDSTP 353

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSPWLQSVVLNS 442
             VK ERL  LQ+ +       +++ VG +  VL++ +  K+  ++ GR+   + V    
Sbjct: 354 AEVKRERLYRLQETINANARRISESMVGTVQRVLVDGRSRKDPNEISGRTENNRVVNFAG 413

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
               IG  ++VRIT+ K ++L GEL+
Sbjct: 414 HPRLIGHFVEVRITEAKPNSLRGELL 439


>gi|294338754|emb|CAZ87086.1| MiaB protein (Methylthiolation of isopentenylated A37 derivatives
           in tRNA) [Thiomonas sp. 3As]
          Length = 453

 Score =  398 bits (1023), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 212/454 (46%), Positives = 297/454 (65%), Gaps = 15/454 (3%)

Query: 17  IVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREK 75
           + D  IV ++ F+K++GCQMN YDS +M D+   ++GYE V +  +ADLI+LNTC IREK
Sbjct: 1   MTDASIVTKKVFIKTFGCQMNEYDSAKMADVLGAAEGYEPVATPQEADLILLNTCSIREK 60

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135
           A EKV+S LGR+R LK  +     +LL+ V GCVA  EGE I++R+P V++V GPQT +R
Sbjct: 61  AQEKVFSDLGRLRELKADK----PNLLIGVGGCVASQEGEAIVKRAPYVDLVFGPQTLHR 116

Query: 136 LPELL-ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCV 194
           LP+L+ +R   G+  VD  +   +KF+ L        R  G +AF++I EGC K+C++CV
Sbjct: 117 LPQLIAQRQALGRAQVDISFPEIEKFDHLPPA-----RVEGPSAFVSIMEGCSKYCSYCV 171

Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL 254
           VPYTRG E+SR L  V+ E  +L   GV E+TLLGQNVNAW G G +GE   F  LL  +
Sbjct: 172 VPYTRGEEVSRPLVDVLTEVAELASLGVREVTLLGQNVNAWLGSG-EGEDFAF--LLECV 228

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
           +EI G+ R+RYTTSHP++ +  LI A+G +  L+ ++HLPVQ GSDRIL +M R ++A E
Sbjct: 229 AEIDGIERIRYTTSHPKEFTQRLIDAYGRIPKLVNHVHLPVQHGSDRILAAMKRGYSALE 288

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
           ++ I+ R+R+VRPDI I SDFIVGFPGETD DF   M L++ + +  +FSF +SPR GTP
Sbjct: 289 FKSIVRRLRAVRPDICIGSDFIVGFPGETDADFTQLMKLIEDMQFDASFSFIFSPRPGTP 348

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSP 433
            +N+ +    +VK +RL  LQ ++  Q  + + A V     VLIE    K+  +L GR+ 
Sbjct: 349 AANLADDTPADVKLKRLQTLQAQIEAQASAISAAMVDTEQAVLIEGPSKKDPSELQGRTE 408

Query: 434 WLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
             + V L +    IG I+ VRIT     +L GE+
Sbjct: 409 NNRIVHLKANARLIGQIVPVRITTAYPHSLRGEV 442


>gi|114319555|ref|YP_741238.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Alkalilimnicola ehrlichii
           MLHE-1]
 gi|114225949|gb|ABI55748.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Alkalilimnicola ehrlichii
           MLHE-1]
          Length = 508

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 211/448 (47%), Positives = 300/448 (66%), Gaps = 17/448 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQ-GYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           R +VK++GCQMN YDS +M D+   + GY RV+S  DAD+I+LNTC +REKA EKV+S L
Sbjct: 64  RVYVKTHGCQMNEYDSDKMADVLVKERGYTRVDSPGDADVILLNTCSVREKAQEKVFSEL 123

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR ++ K    + G   ++ V GCVA  EGE I++R+P V+VV GPQT +RLPE+++RAR
Sbjct: 124 GRWKDYKT---RNGA--VIGVGGCVASQEGEAIVQRAPHVDVVFGPQTLHRLPEMIDRAR 178

Query: 145 FGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            G R VVD  +   +KF+RL        R  G TAF++I EGC K+C+FCVVPYTRG EI
Sbjct: 179 DGGRSVVDVSFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCSKYCSFCVVPYTRGEEI 233

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR    V+ E   L + GV E+TLLGQNVNA+RG   DG  C  + L++ ++ + G+ R+
Sbjct: 234 SRPFEDVIAEVASLAEQGVREVTLLGQNVNAYRGPMADGTVCDLALLIHYVAALDGIGRI 293

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+TTSHP + SD LI+A+ +   L  +LHLPVQSGSD +LK M R HTA EY   I+RI+
Sbjct: 294 RFTTSHPVEFSDSLIEAYREEPKLAGHLHLPVQSGSDLVLKLMKRGHTAAEYLDKIERIK 353

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           + RP I+I+SDFIVG+PGE++ DF  T+ L++ +G+ Q+FSF YSPR GTP +++ +   
Sbjct: 354 AARPGISIASDFIVGYPGESEADFEDTLRLIEAVGFDQSFSFLYSPRPGTPAASLSDSTP 413

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSPWLQSVVLNS 442
             VK ERL  LQ+ +       +++ VG +  VL++ +  K+  ++ GR+    + V+N 
Sbjct: 414 AEVKRERLYRLQETINANARRISESMVGTVQRVLVDGRSRKDPNEISGRTE--NNRVVNF 471

Query: 443 KNHN--IGDIIKVRITDVKISTLYGELV 468
             H   IG  ++VRIT+ K ++L GEL+
Sbjct: 472 AGHPRLIGHFVEVRITEAKPNSLRGELL 499


>gi|293390538|ref|ZP_06634872.1| lipoyl synthase [Aggregatibacter actinomycetemcomitans D7S-1]
 gi|290951072|gb|EFE01191.1| lipoyl synthase [Aggregatibacter actinomycetemcomitans D7S-1]
          Length = 474

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 205/447 (45%), Positives = 292/447 (65%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           Q+  +K++GCQMN YDS +M D+  S  G E     ++AD+++LNTC IREKA EKV+  
Sbjct: 3   QKLHIKTWGCQMNEYDSSKMADLLHSTHGLELTEVPEEADVLLLNTCSIREKAQEKVFHQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK    K   +LL+ V GCVA  EGE I  R+P V+++ GPQT +RLPE++ + 
Sbjct: 63  LGRWKELK----KSNPNLLIGVGGCVASQEGEHIRTRAPYVDIIFGPQTLHRLPEMINQI 118

Query: 144 RFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           R GK  VVD  +   +KF+RL        R  G TAF++I EGC+K+CT+CVVPYTRG E
Sbjct: 119 RGGKSAVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTYCVVPYTRGEE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR +  ++ E  +L + GV E+ LLGQNVNA+RG   DG+ CTF++LL  ++ I G+ R
Sbjct: 174 VSRPVDDILFEIAQLAEQGVREVNLLGQNVNAYRGPTFDGDICTFAELLRLVAAIDGIDR 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LR+TTSHP + +D +I  + D   L+ +LHLPVQSGSD +L  M R HTA EY+ II ++
Sbjct: 234 LRFTTSHPIEFTDDIIDVYRDTPELVSFLHLPVQSGSDHVLNMMKRGHTAIEYKSIIRKL 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           ++VRP I +SSDFIVGFPGET++DF  TM+L+ ++ +  +FSF YS R GTP ++  + V
Sbjct: 294 KAVRPHIQVSSDFIVGFPGETNEDFEQTMNLIAQVNFDMSFSFIYSARPGTPAADYPDDV 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441
            E  K +RL  LQ+++  Q   F+ A +G    VL+E   K+   +L GR+   + V   
Sbjct: 354 SEEEKKQRLYLLQQRINNQAAQFSRAMLGSEQRVLVEGPSKKDIMELTGRTETNRIVNFQ 413

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                IG  + ++ITDV  ++L GE+V
Sbjct: 414 GTPDMIGKFVDIKITDVFTNSLRGEVV 440


>gi|261868524|ref|YP_003256446.1| (dimethylallyl)adenosine tRNA methylthiotransferase
           [Aggregatibacter actinomycetemcomitans D11S-1]
 gi|261413856|gb|ACX83227.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 474

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 205/447 (45%), Positives = 292/447 (65%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           Q+  +K++GCQMN YDS +M D+  S  G E     ++AD+++LNTC IREKA EKV+  
Sbjct: 3   QKLHIKTWGCQMNEYDSSKMADLLHSTHGLELTEVPEEADVLLLNTCSIREKAQEKVFHQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK    K   +LL+ V GCVA  EGE I  R+P V+++ GPQT +RLPE++ + 
Sbjct: 63  LGRWKELK----KSNPNLLIGVGGCVASQEGEHIRTRAPYVDIIFGPQTLHRLPEMINQI 118

Query: 144 RFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           R GK  VVD  +   +KF+RL        R  G TAF++I EGC+K+CT+CVVPYTRG E
Sbjct: 119 RGGKSAVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTYCVVPYTRGEE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR +  ++ E  +L + GV E+ LLGQNVNA+RG   DG+ CTF++LL  ++ I G+ R
Sbjct: 174 VSRPVDDILFEIAQLAEQGVREVNLLGQNVNAYRGPTFDGDICTFAELLRLVAAIDGIDR 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LR+TTSHP + +D +I  + D   L+ +LHLPVQSGSD +L  M R HTA EY+ II ++
Sbjct: 234 LRFTTSHPIEFTDDIIDVYRDTPELVSFLHLPVQSGSDHVLNMMKRGHTAIEYKSIIRKL 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           ++VRP I +SSDFIVGFPGET++DF  TM+L+ ++ +  +FSF YS R GTP ++  + V
Sbjct: 294 KAVRPHIQVSSDFIVGFPGETNEDFEQTMNLIAQVNFDMSFSFIYSARPGTPAADYPDDV 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441
            E  K +RL  LQ+++  Q   F+ A +G    VL+E   K+   +L GR+   + V   
Sbjct: 354 SEEEKKQRLYLLQQRINNQAAQFSRAMLGSEQRVLVEGPSKKDIMELTGRTETNRIVNFQ 413

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                IG  + ++ITDV  ++L GE+V
Sbjct: 414 GTPDMIGKFVDIKITDVFTNSLRGEVV 440


>gi|319940867|ref|ZP_08015206.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Sutterella wadsworthensis 3_1_45B]
 gi|319805749|gb|EFW02530.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Sutterella wadsworthensis 3_1_45B]
          Length = 442

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 211/447 (47%), Positives = 292/447 (65%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ +++S+GCQMN YDS R+ D+   +   E+   +++AD++VLNTC IREKA EKV+S 
Sbjct: 4   KKLYLRSFGCQMNDYDSNRIVDLLGEAMQLEKTEDLNEADVVVLNTCSIREKAQEKVFSD 63

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-ER 142
           LGRIR  K  R     D+++ V GCVA  EG  I++R+P V+VV GPQT +RLPE+L ER
Sbjct: 64  LGRIREAKRDR----PDMMIAVGGCVASQEGAGIVKRAPWVDVVFGPQTMHRLPEMLGER 119

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           AR GK  VD  +   +KF+ L        R  G  AF++I EGC K+CT+CVVPYTRG E
Sbjct: 120 ARTGKPQVDVSFPEIEKFDHLPA-----PRAEGAAAFVSIMEGCSKYCTYCVVPYTRGEE 174

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           ISR L  V+ E  +L D GV E+TLLGQNVNA+RG   +G+   F+ LL  +SEI G+ R
Sbjct: 175 ISRPLVDVLVEVAQLADQGVKEVTLLGQNVNAYRGVTPEGDTADFAMLLEYVSEIDGIER 234

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +RYTTSHPR+ +  LI A+  L  L+ ++HLPVQ+GSDRIL +M R ++  EY+ II R+
Sbjct: 235 IRYTTSHPREFTQRLIDAYTKLPKLVSHVHLPVQAGSDRILTAMKRGYSVLEYKSIIRRL 294

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           ++ RP IAI++DFIVGFPGET +DF  TM L+D +G+  +FSF YSPR GTP + + ++ 
Sbjct: 295 KAARPGIAIATDFIVGFPGETAEDFEKTMRLIDDVGFDASFSFVYSPRPGTPAARLPDET 354

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRSPWLQSVVLN 441
             +VK ERL  LQ+K+ +     +   +G+I  VL+    +  +G L  R+   + V   
Sbjct: 355 PYSVKLERLQRLQRKIDDNAAEISRNMLGKIERVLVVGPARRGEGMLSARTDNNRIVNFA 414

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                I  +  VRIT+V   TL GELV
Sbjct: 415 GDPSLINQMTNVRITEVFPHTLGGELV 441


>gi|307246244|ref|ZP_07528325.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|307255228|ref|ZP_07537043.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|307257391|ref|ZP_07539161.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Actinobacillus pleuropneumoniae serovar 10 str. D13039]
 gi|307259662|ref|ZP_07541386.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Actinobacillus pleuropneumoniae serovar 11 str. 56153]
 gi|306852853|gb|EFM85077.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|306861777|gb|EFM93756.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|306864241|gb|EFM96154.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Actinobacillus pleuropneumoniae serovar 10 str. D13039]
 gi|306866307|gb|EFM98171.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Actinobacillus pleuropneumoniae serovar 11 str. 56153]
          Length = 475

 Score =  397 bits (1019), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 203/446 (45%), Positives = 295/446 (66%), Gaps = 12/446 (2%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +  + ++GCQMN YDS +M D+  S  G E  +  ++AD+++LNTC IREKA EKV+S L
Sbjct: 3   KLHITTWGCQMNEYDSSKMADLLNSTHGLELTDKPEEADVLLLNTCSIREKAQEKVFSQL 62

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR +N K    K+  DL++ V GCVA  EGE I  R+P V++V GPQT +RLPE++ + R
Sbjct: 63  GRWKNWK----KDKPDLIIGVGGCVASQEGEHIRDRAPFVDIVFGPQTLHRLPEMINKIR 118

Query: 145 FGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            G R +VD  +   +KF+RL        R  G TAF++I EGC+K+C+FCVVPYTRG E+
Sbjct: 119 GGDRAIVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCSFCVVPYTRGEEV 173

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR +  V+ E  +L + GV E+ LLGQNVNA+RG+  DG  CTF++LL  ++ I G+ R+
Sbjct: 174 SRPVDDVLFEIAQLAEQGVREVNLLGQNVNAYRGETFDGGICTFAELLRLVAAIDGIDRV 233

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           RYTTSHP + +D +I+ + D   L+ +LHLP+QSG+DR+L  M R HTA EY+ II ++R
Sbjct: 234 RYTTSHPIEFTDDIIEVYRDTPELVSFLHLPIQSGADRVLTMMKRNHTALEYKAIIRKLR 293

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
            VRP+I ISSDFIVGFPGET +DF  TM +++++ +  +FSF YS R GTP +++ + + 
Sbjct: 294 EVRPNIQISSDFIVGFPGETAEDFEQTMKVIEQVNFDMSFSFIYSARPGTPAADLPDDIS 353

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNS 442
           E  K  RL  LQ+++  Q + F+ A +G    VL+E   K+   +L GR+   + V    
Sbjct: 354 EEEKKARLARLQQRINHQAMQFSRAMLGTEQRVLVEGPSKKDIMELTGRTENNRIVNFQG 413

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
               IG  + ++ITDV  ++L G++V
Sbjct: 414 TPDMIGKFVDIKITDVYTNSLRGDVV 439


>gi|71909139|ref|YP_286726.1| hypothetical protein Daro_3527 [Dechloromonas aromatica RCB]
 gi|123774245|sp|Q47A75|MIAB_DECAR RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|71848760|gb|AAZ48256.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Dechloromonas aromatica
           RCB]
          Length = 445

 Score =  396 bits (1018), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 205/452 (45%), Positives = 299/452 (66%), Gaps = 15/452 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           +P++ F++++GCQMN YDS +M D+   S+G  + ++ ++AD+I+ NTC +REKA EKV+
Sbjct: 1   MPKKLFIRTFGCQMNEYDSDKMADVLNASEGVIKTDNPEEADIILFNTCSVREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL- 140
             LGR+R+LK    K   +L++ V GCVA  EG+ I+ R+P V+VV GPQT +RLP+L+ 
Sbjct: 61  HDLGRVRHLK----KLNPNLVIGVGGCVASQEGDAIIARAPYVDVVFGPQTLHRLPQLIA 116

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           ER   GK  VD  +   +KF+ +       +  +G +AF++I EGC KFCTFC+VPYTRG
Sbjct: 117 ERKAKGKAAVDVSFPEIEKFDAMP-----PSEIKGASAFVSIMEGCSKFCTFCIVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG--EKCTFSDLLYSLSEIK 258
            E+SR  + V+ E   L  +GV E+TLLGQNVNA+RG  ++G  EK   + L+  ++E+ 
Sbjct: 172 GEVSRPFNDVLTEVADLAAHGVGEVTLLGQNVNAYRGD-MEGTEEKADLALLIEYIAEVP 230

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           G+ R+RYTTSHPR+M+  L   +  +  L+ +LHLPVQ+GSDR+L +M R +T  EY+ I
Sbjct: 231 GIERIRYTTSHPREMTQSLFDTYVKVPKLVSHLHLPVQAGSDRVLAAMKRGYTTLEYKSI 290

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           I ++R+ RPDI++SSDFIVGFPGETD+DF  TM L+D +G+  +FSF YSPR GTP   +
Sbjct: 291 IRKLRAARPDISLSSDFIVGFPGETDEDFEKTMKLIDDVGFDSSFSFIYSPRPGTPALEL 350

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQS 437
            +    +VK+ RLL LQK++ EQ  + +   VG I  VL+E   K+   +L GR+   + 
Sbjct: 351 DDSTPADVKSARLLRLQKRIDEQAQAISQTMVGSIQRVLVEGTSKKDVHELAGRTDNNRI 410

Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
           V  +     I   + VRIT     TL GE+V+
Sbjct: 411 VNFSGNPRLINTFVDVRITSSLSHTLRGEIVI 442


>gi|183598131|ref|ZP_02959624.1| hypothetical protein PROSTU_01496 [Providencia stuartii ATCC 25827]
 gi|188020290|gb|EDU58330.1| hypothetical protein PROSTU_01496 [Providencia stuartii ATCC 25827]
          Length = 476

 Score =  396 bits (1018), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 202/448 (45%), Positives = 297/448 (66%), Gaps = 14/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ ++K++GCQMN YDS +M  +  S  GY+     ++ADL++LNTC IREKA EKV+  
Sbjct: 5   KKLYIKTWGCQMNEYDSSKMASLLESTHGYQITEIPEEADLLLLNTCSIREKAQEKVFHQ 64

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR ++ K+S      D+++ V GCVA  EG+ I +R+P V++V GPQT +RLPE++ + 
Sbjct: 65  LGRWKSFKDS----NPDIIIGVGGCVASQEGDFIRQRAPSVDIVFGPQTLHRLPEMINQV 120

Query: 144 RFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           + G R  V+D  +   +KF+RL        R  G TAF++I EGC+K+CTFCVVPYTRG 
Sbjct: 121 K-GSRSPVIDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTFCVVPYTRGE 174

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E+SR    ++ E  +L   GV E+ LLGQNVNA+RG   DGE CTF++L+  ++ I G+ 
Sbjct: 175 EVSRPCDDILFEIAQLAAQGVREVNLLGQNVNAYRGATFDGEICTFAELIRLVAAIDGID 234

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHP + +D +I+ + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II +
Sbjct: 235 RIRFTTSHPIEFTDDIIEVYEDTPELVSFLHLPVQSGSDRILTLMKRAHTALEYKAIIRK 294

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R  RPDI ISSDFIVGFPGET+DDF  TM L+  + +  +FSF YSPR GTP +++ + 
Sbjct: 295 LRKARPDILISSDFIVGFPGETNDDFEKTMKLIADVNFDMSFSFIYSPRPGTPAADLPDD 354

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVL 440
           V E+ K +RL  LQ+++ +Q +S++ A +G +  +L+E   ++   +L GR+   + V  
Sbjct: 355 VSEDEKKQRLYLLQQRINQQAMSYSRAMLGTVQRILVEGPSRKNVMELSGRTESNRVVNF 414

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 IG  + V I DV  ++L G+++
Sbjct: 415 EGSPDMIGKFVDVEIVDVYANSLRGKVI 442


>gi|109898523|ref|YP_661778.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Pseudoalteromonas
           atlantica T6c]
 gi|122971932|sp|Q15TR4|MIAB_PSEA6 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|109700804|gb|ABG40724.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Pseudoalteromonas
           atlantica T6c]
          Length = 477

 Score =  396 bits (1018), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 202/447 (45%), Positives = 295/447 (65%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ F+K++GCQMN YDS +M D+  S  GY+  ++ ++AD+I+LNTC IREKA EKV+  
Sbjct: 3   KKLFIKTWGCQMNEYDSQKMADLLDSTHGYQVADTAEEADIILLNTCSIREKAQEKVFHQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR +NLK  +     +L++ V GCVA  EG+ I +R+P V++V GPQT +RLPE++ + 
Sbjct: 63  LGRWKNLKQDK----PELIIGVGGCVASQEGQVIRQRAPFVDLVFGPQTLHRLPEMINQI 118

Query: 144 RFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           + G   V+D  +   +KF+RL        +  G TAF++I EGC K+CTFCVVPYTRG E
Sbjct: 119 KGGSSSVIDISFPEIEKFDRLP-----EPKAEGPTAFVSIMEGCSKYCTFCVVPYTRGEE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR +  V+ E  +L + GV E+ LLGQNVNA+RG   DG  CTF++LL  ++ I G+ R
Sbjct: 174 VSRPVDDVLLEVAQLAEQGVREVNLLGQNVNAFRGPHHDGAICTFAELLEMVASIDGIDR 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +RYTTSHP + +D +I A+  +  L+ +LHLPVQSGSDR+L  M R HTA EY+  I ++
Sbjct: 234 IRYTTSHPVEFTDDIIDAYATIPELVDHLHLPVQSGSDRVLNLMKRGHTAIEYKSKIRKL 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R +RP++++SSDFI+GFPGETDDDF ATMDL+  + +  +FSF YS R GTP +++ + V
Sbjct: 294 RKIRPNLSMSSDFIIGFPGETDDDFEATMDLIQAMDFDLSFSFIYSARPGTPAADLPDDV 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLVGRSPWLQSVVLN 441
            E  K ERL  LQ ++ +Q +      +     VL+E   K+   +L GR+   + V   
Sbjct: 354 SETTKKERLQLLQNRITQQALRIARNMIDSEQRVLVEGPSKKNPMELSGRTENNRVVNFE 413

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                IG  + V+ITDV  ++L G+++
Sbjct: 414 GTPDMIGGFVDVKITDVFANSLRGDVL 440


>gi|332140833|ref|YP_004426571.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Alteromonas
           macleodii str. 'Deep ecotype']
 gi|229890437|sp|B4S0R8|MIAB_ALTMD RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|327550855|gb|AEA97573.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Alteromonas
           macleodii str. 'Deep ecotype']
          Length = 477

 Score =  395 bits (1016), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 204/447 (45%), Positives = 292/447 (65%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ ++K++GCQMN YDS +M D+  S  G+    S ++AD+I+LNTC IREKA EKV+  
Sbjct: 3   KKLYIKTWGCQMNEYDSEKMADLLDSTHGFSAAQSAEEADVILLNTCSIREKAQEKVFHQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK  +     +L++ V GCVA  EG+ I +R+P V++V GPQT +RLPE++   
Sbjct: 63  LGRWKTLKQDK----PELIIGVGGCVASQEGDTIRQRAPFVDLVFGPQTLHRLPEMINEL 118

Query: 144 RFG-KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           + G K V+D  +   +KF+RL        R  G TAF++I EGC K+CTFCVVPYTRG E
Sbjct: 119 KGGAKSVIDVSFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCSKYCTFCVVPYTRGEE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR +  V+ E  +L   GV E+ LLGQNVNA+RG+  DG  C FS+LL  ++ I G+ R
Sbjct: 174 VSRPVDDVLLEIAQLAGQGVREVNLLGQNVNAYRGENYDGTICRFSELLELVAAIDGIDR 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +RYTTSHP + +D +I A+  +  L+ +LHLPVQSGSDRIL  M R HTA EY+  + ++
Sbjct: 234 IRYTTSHPVEFTDDIIDAYASIPELVDHLHLPVQSGSDRILNLMKRGHTALEYKSKMRKL 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           + +RP+I++SSDFI+GFPGETD DF ATMDL+  + Y  +FSF YS R GTP ++ ++ V
Sbjct: 294 KKIRPNISLSSDFIIGFPGETDADFEATMDLIQAVDYDLSFSFIYSARPGTPAADAVDDV 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLVGRSPWLQSVVLN 441
            E  K +RL  LQ+++ +Q +      VG    +L+E   K+   +L GR+   + V   
Sbjct: 354 TEETKKQRLHLLQQRITQQALRIARHMVGTEQRILVEGPSKKNPMELSGRTENNRVVNFE 413

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                IG+ + V ITDV  ++L GE+V
Sbjct: 414 GTPDMIGEFVDVNITDVFTNSLRGEVV 440


>gi|198282884|ref|YP_002219205.1| (dimethylallyl)adenosine tRNA methylthiotransferase
           [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218665819|ref|YP_002425085.1| tRNA-i(6)A37 modification enzyme MiaB [Acidithiobacillus
           ferrooxidans ATCC 23270]
 gi|229890414|sp|B7J5B2|MIAB_ACIF2 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|229890415|sp|B5ENG4|MIAB_ACIF5 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|198247405|gb|ACH82998.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218518032|gb|ACK78618.1| tRNA-i(6)A37 modification enzyme MiaB [Acidithiobacillus
           ferrooxidans ATCC 23270]
          Length = 451

 Score =  395 bits (1016), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 216/445 (48%), Positives = 289/445 (64%), Gaps = 13/445 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMED-MFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           Q  ++K+YGCQMN YDS RM D +  S G   V+    AD+++LNTC IREKA +KV++ 
Sbjct: 2   QNLYIKTYGCQMNEYDSERMADTLAVSHGLRLVDDPVLADVLLLNTCSIREKAEDKVFTQ 61

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LG  R  K  R     ++++ V GCVA  EGE + RR+P V++V GPQT +RLP+LL+  
Sbjct: 62  LGFWRPFKERR----PEVVIGVGGCVASQEGERLRRRAPYVDLVFGPQTLHRLPDLLDAC 117

Query: 144 RFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
              +R  VD  + + +KF+ L    G    + G TAF+TIQEGCDKFCTFCVVP+TRG E
Sbjct: 118 LAERRPQVDIAFPMLEKFDHLPQRPG----RDGATAFVTIQEGCDKFCTFCVVPHTRGRE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-GLDGEKCTFSDLLYSLSEIKGLV 261
            SRS+  ++ E R L++ GV EITLLGQNVNA+RG  GL GE    +DLL  L+ I GL+
Sbjct: 174 YSRSMPDILREVRALVEQGVREITLLGQNVNAYRGATGLVGEG-GLADLLERLARIPGLL 232

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           RLRYTTSHP ++ D LI AHG + +L P+LHLPVQSGSDRIL+ M+R+HT  +Y   +DR
Sbjct: 233 RLRYTTSHPANLDDELIAAHGSIGILAPHLHLPVQSGSDRILRRMHRKHTVGQYLDKVDR 292

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R+ RP I ISSDFIVGFPGETD DF ATM+L+D + + Q+FSFKYS R  TP   + + 
Sbjct: 293 LRAARPGIQISSDFIVGFPGETDADFAATMELIDAVRFDQSFSFKYSQRPNTPALKLKDS 352

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440
           V E VK +RL  LQ ++      +  A VG    VLI    +   + L G++   ++V L
Sbjct: 353 VPEAVKEDRLAVLQGRINGLAQGYAQALVGTQQAVLITGPSRRDAQELTGKTACNRAVNL 412

Query: 441 NSKNHNIGDIIKVRITDVKISTLYG 465
                 +G ++ V IT    ++L G
Sbjct: 413 AGSMDWVGQMLDVEITAALPNSLRG 437


>gi|15602866|ref|NP_245938.1| hypothetical protein PM1001 [Pasteurella multocida subsp. multocida
           str. Pm70]
 gi|18203221|sp|Q9L699|MIAB_PASMU RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|7716541|gb|AAF68426.1|AF237940_1 conserved hypothetical protein [Pasteurella multocida]
 gi|12721330|gb|AAK03085.1| unknown [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 474

 Score =  395 bits (1015), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 208/447 (46%), Positives = 291/447 (65%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           Q+  +K++GCQMN YDS +M D+  S  G E     ++AD+++LNTC IREKA EKV+  
Sbjct: 3   QKLHIKTWGCQMNEYDSSKMADLLNSTHGLELTEIPEEADVLLLNTCSIREKAQEKVFHQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK    K    L++ V GCVA  EGE I  R+P V+++ GPQT +RLPE++ + 
Sbjct: 63  LGRWKELK----KHKPGLVIGVGGCVASQEGEHIRTRAPYVDIIFGPQTLHRLPEMINQI 118

Query: 144 RFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           R GK  VVD  +   +KF+RL        R  G TAF++I EGC+K+C+FCVVPYTRG E
Sbjct: 119 RGGKSSVVDVSFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCSFCVVPYTRGEE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR +  V+ E  +L + GV E+ LLGQNVNA+RG   D   CTF++LL  ++ I G+ R
Sbjct: 174 VSRPVDDVLFEIAQLAEQGVREVNLLGQNVNAYRGATHDDGICTFAELLRLVAAIDGIDR 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LR+TTSHP + +D +I  + D   L+ +LHLPVQSGSDR+L  M R HTA EY+ II ++
Sbjct: 234 LRFTTSHPIEFTDDIIDVYRDTPELVSFLHLPVQSGSDRVLSMMKRNHTALEYKSIIRKL 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+VRP+I ISSDFIVGFPGET +DF  TM+L+ ++ +  +FSF YS R GTP ++M + V
Sbjct: 294 RAVRPEIQISSDFIVGFPGETAEDFEQTMNLIAQVNFDMSFSFIYSARPGTPAADMPDDV 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441
            E  K +RL  LQ+++  Q   F+ A +G    VL+E   K+   +L GR+   + V   
Sbjct: 354 TEEEKKQRLYVLQQRINNQAAQFSRAMLGTEQRVLVEGPSKKDLMELTGRTETNRIVNFV 413

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                IG  + ++ITDV  ++L GE+V
Sbjct: 414 GTPDMIGKFVDIKITDVFTNSLRGEVV 440


>gi|325981206|ref|YP_004293608.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Nitrosomonas sp. AL212]
 gi|325530725|gb|ADZ25446.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Nitrosomonas sp. AL212]
          Length = 442

 Score =  395 bits (1014), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 207/446 (46%), Positives = 293/446 (65%), Gaps = 12/446 (2%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQ-GYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + ++K++GCQMN YDS +M D+  +  G E  N   +AD+I+ NTC +REKA EKV+  L
Sbjct: 4   KLYIKTFGCQMNEYDSEKMADVLHAAYGMESTNDPAEADMILFNTCSVREKAQEKVFHDL 63

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE-RA 143
           GR+R+LK    +   DLL+ V GCVA  EG+ I+ R+P V++V GPQT +RLP+L+E R 
Sbjct: 64  GRVRHLK----ERNPDLLIGVGGCVASQEGKAIVSRAPFVDIVFGPQTLHRLPQLIETRK 119

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             G+  VD  +   +KF+ L        R  GVTAF++I EGC K+C+FCVVPYTRG E+
Sbjct: 120 ATGRSQVDISFPEIEKFDHLPPA-----RTEGVTAFVSIMEGCSKYCSFCVVPYTRGEEV 174

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR L  V+ E   L   G+ EITLLGQNVNA+ G   DGE   F+ LL  L +I G+ R+
Sbjct: 175 SRPLDDVLTEIAVLAAQGIKEITLLGQNVNAYLGMMNDGEIADFALLLEYLHDIPGIERI 234

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           RYTTSHP++ +  LI+A+  L  L+ +LHLPVQSGSDR+L +M R ++  EY+ II ++R
Sbjct: 235 RYTTSHPKEFTTRLIQAYNQLPKLVNHLHLPVQSGSDRVLAAMKRGYSVLEYKSIIRKVR 294

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           +VRPDI++SSDFIVGFPGET+ DF+AT++LV+++ +  ++SF YSPR GTP +++ + + 
Sbjct: 295 AVRPDISLSSDFIVGFPGETEVDFQATLNLVEEMNFDDSYSFVYSPRPGTPAADLPDALP 354

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNS 442
           +  K ERL  LQ +L  Q    +   VG +  VL+E   K+   +L GR+   + V L  
Sbjct: 355 QEEKLERLHRLQAQLSSQSRKISLQMVGTVQRVLLEGTSKKNLDELSGRTDNNRVVNLAG 414

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
                G  + VRIT+ +  +L GELV
Sbjct: 415 NPELTGRFVNVRITEARAHSLRGELV 440


>gi|300113051|ref|YP_003759626.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Nitrosococcus watsonii
           C-113]
 gi|299538988|gb|ADJ27305.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Nitrosococcus watsonii
           C-113]
          Length = 447

 Score =  395 bits (1014), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 204/444 (45%), Positives = 294/444 (66%), Gaps = 12/444 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ ++K++GCQMN YDS RM D+   S G E  +  + A++++LNTC +REKA EKV+S 
Sbjct: 3   KKLYIKTHGCQMNEYDSSRMADVLRESHGLELTSDPEQAEVLLLNTCSVREKAQEKVFSQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR R LK SR     +L++ V GCVA  EGE I  R+P V++V GPQT +RLP +L +A
Sbjct: 63  LGRWRQLKQSR----PELIIGVGGCVASQEGETIRVRAPYVDLVFGPQTIHRLPAMLAQA 118

Query: 144 RF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           R   + VVD  +   +KF++L        R  G TAF+++ EGC K+C+FCVVPYTRG E
Sbjct: 119 RTRSQPVVDLSFPEIEKFDKLP-----EPRAEGPTAFVSVMEGCSKYCSFCVVPYTRGEE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           ISR L  VV E   L + GV EITLLGQNVNA+RG   +G+    + L+  ++ I+G+ R
Sbjct: 174 ISRPLDDVVAEIVGLAEQGVREITLLGQNVNAYRGAMGEGDVADLALLINYVASIEGIER 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP + SD LI+A  ++  L  +LHLPVQSGSDR+L  M R HT  EY+  + ++
Sbjct: 234 IRFTTSHPVEFSDSLIQAFAEVPELASHLHLPVQSGSDRMLGLMKRGHTVLEYKAKLRKL 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R VRPDI+ISSDFIVG PGET+ DF+AT+ LVD++G+  +FSF YSPR GTP +++ +  
Sbjct: 294 RQVRPDISISSDFIVGLPGETEADFQATLALVDEVGFDHSFSFVYSPRPGTPAASLPDHT 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLN 441
              VK ERL  LQ++LR  +++ +   VG + +VL+E+   K+   L GR+   + V  +
Sbjct: 354 PIAVKKERLAILQERLRALEIAISQGMVGTVQQVLVERPSKKDPTMLAGRTANNRVVNFS 413

Query: 442 SKNHNIGDIIKVRITDVKISTLYG 465
           +    +G  + ++IT+   ++L G
Sbjct: 414 APQVMVGQFVNIKITEALPNSLRG 437


>gi|260914514|ref|ZP_05920983.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Pasteurella dagmatis ATCC
           43325]
 gi|260631615|gb|EEX49797.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Pasteurella dagmatis ATCC
           43325]
          Length = 474

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 207/447 (46%), Positives = 293/447 (65%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           Q+  +K++GCQMN YDS +M D+  S  G E  +  ++AD+++LNTC IREKA EKV+  
Sbjct: 3   QKLHIKTWGCQMNEYDSSKMADLLNSTHGLELTDIPEEADVLLLNTCSIREKAQEKVFHQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK    K    L++ V GCVA  EGE I  R+P V+++ GPQT +RLPE++ + 
Sbjct: 63  LGRWKELK----KHKPGLVIGVGGCVASQEGEHIRTRAPYVDIIFGPQTLHRLPEMINQI 118

Query: 144 RFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           R GK  VVD  +   +KF+RL        R  G TAF++I EGC+K+C+FCVVPYTRG E
Sbjct: 119 RGGKSSVVDVSFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCSFCVVPYTRGEE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR +  V+ E  +L + GV E+ LLGQNVNA+RG   D   CTF++LL  ++ I G+ R
Sbjct: 174 VSRPVDDVLFEIAQLAEQGVREVNLLGQNVNAYRGATHDDGICTFAELLRLVAAIDGIDR 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LR+TTSHP + +D +I  + D   L+ +LHLPVQSGSDR+L  M R HTA EY+ II ++
Sbjct: 234 LRFTTSHPIEFTDDIIDVYRDTPELVSFLHLPVQSGSDRVLSMMKRNHTALEYKSIIRKL 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+VRP+I ISSDFIVGFPGET +DF  TM+L+ ++ +  +FSF YS R GTP ++M + V
Sbjct: 294 RAVRPEIQISSDFIVGFPGETAEDFEQTMNLIAQVNFDMSFSFIYSARPGTPAADMPDDV 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441
            E+ K +RL  LQ+++  Q   F+ A +G    VL+E   K+   +L GR+   + V   
Sbjct: 354 SEDEKKQRLYVLQQRINNQAAQFSRAMLGTEQRVLVEGPSKKDLMELTGRTETNRIVNFV 413

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                IG  + ++ITDV  ++L G++V
Sbjct: 414 GTPDMIGKFVDIKITDVFTNSLRGDVV 440


>gi|262274718|ref|ZP_06052529.1| tRNA-i(6)A37 methylthiotransferase [Grimontia hollisae CIP 101886]
 gi|262221281|gb|EEY72595.1| tRNA-i(6)A37 methylthiotransferase [Grimontia hollisae CIP 101886]
          Length = 474

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 207/447 (46%), Positives = 294/447 (65%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQG-YERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS +M D+  + G YE     ++AD+++LNTC IREKA EKV+  
Sbjct: 3   KKLLIKTWGCQMNEYDSSKMADLLNATGGYELTEDPEEADVLLLNTCSIREKAQEKVFHQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR +NLK+ +      L++ V GCVA  EG+ I  R+P V+V+ GPQT +RLPE+++++
Sbjct: 63  LGRWKNLKDQK----PGLVIGVGGCVATQEGDHIRERAPYVDVIFGPQTLHRLPEMIKQS 118

Query: 144 RFG-KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           +     V+D  +   +KF+RL        R  G TAF++I EGC K+CTFCVVPYTRG E
Sbjct: 119 QQDDAPVMDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCSKYCTFCVVPYTRGEE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR L  V+ E  +L + GV E+ LLGQNVNA+RG+  DGE C+F++LL  ++ I G+ R
Sbjct: 174 VSRPLDDVLYEIAQLAEQGVREVNLLGQNVNAYRGEMHDGEICSFAELLRYVAAIDGIDR 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +RYTTSHP + +D +I+ + D   ++ +LHLPVQSGSDRIL  M R HTA EY+  I ++
Sbjct: 234 IRYTTSHPIEFTDDIIEVYKDTPEVVSFLHLPVQSGSDRILTMMKRPHTAIEYKSKIRKL 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R  RP IAISSDFIVGFPGETD DF ATM L+  + +  +FSF YSPR GTP ++M +  
Sbjct: 294 REARPGIAISSDFIVGFPGETDADFEATMKLIRDVNFDMSFSFIYSPRPGTPAADMPDDT 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441
            E VK ERL  LQ+++  Q + ++   +G    +L+E   K+   +L GR+   + V   
Sbjct: 354 PEQVKKERLYELQQQINAQAMIYSRQMLGTEQRILVEGPSKKNLMELRGRTENNRVVNFE 413

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                IG  + V+IT+V  ++L GELV
Sbjct: 414 GAVDLIGQFVDVKITEVLPNSLRGELV 440


>gi|89902134|ref|YP_524605.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Rhodoferax
           ferrireducens T118]
 gi|123091133|sp|Q21T29|MIAB_RHOFD RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|89346871|gb|ABD71074.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Rhodoferax ferrireducens
           T118]
          Length = 452

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 206/454 (45%), Positives = 293/454 (64%), Gaps = 20/454 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ F+K+YGCQMN YDS +M D+   +QGYE  +++++ADLI+ NTC +REKA EKV+S 
Sbjct: 3   KKVFIKTYGCQMNEYDSDKMSDVLGAAQGYEPTDNVEEADLILFNTCSVREKAQEKVFSD 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-ER 142
           LGR+++LK    K+G   L+ V GCVA  EG  I+ R+P V+VV GPQT +RLP+LL ER
Sbjct: 63  LGRVKHLK----KKGA--LIGVGGCVASQEGAAIIERAPYVDVVFGPQTLHRLPQLLAER 116

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            R  +  VD  +   +KF+ L        R  G +AF++I EGC K+C++CVVPYTRG E
Sbjct: 117 ERLNRSQVDISFPEIEKFDHLPPA-----RVEGASAFVSIMEGCSKYCSYCVVPYTRGEE 171

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK------GLDGEKCTFSDLLYSLSE 256
           +SR    V+ E   L D GV EITLLGQNVNAWR +       L  E   F+ LL  +S+
Sbjct: 172 VSRPFEDVLVEVAGLADQGVKEITLLGQNVNAWRSRMIGAASALSSEMADFATLLEYVSD 231

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           I G+ R+RY TSHP + +  LI A+  L  L+ +LHLPVQ GSDRIL +M R +TA EY+
Sbjct: 232 IPGIERIRYVTSHPNEFTPSLIAAYDKLPKLVSHLHLPVQHGSDRILMAMKRGYTAMEYK 291

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
             + ++R++RPD+A+SSDFIVGFPGET+DDF   M L+D +G+  +FSF +SPR GTP +
Sbjct: 292 STVRKLRAIRPDMALSSDFIVGFPGETEDDFSKMMKLIDDVGFDNSFSFIFSPRPGTPAA 351

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWL 435
           N+ +     VK  RL  LQ  + +     +++ +G +  +L+E   K +  +L+GR+   
Sbjct: 352 NLHDDTPHEVKLRRLQHLQTVINDSIKRISESRLGTVQRILVEGASKRDSTELMGRTECN 411

Query: 436 QSVVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
           + V    +   IG ++ V IT+ +  TL GE+V 
Sbjct: 412 RVVNFCGQPRLIGQMVDVAITETRSFTLRGEVVT 445


>gi|167856488|ref|ZP_02479203.1| hypothetical protein HPS_09340 [Haemophilus parasuis 29755]
 gi|167852383|gb|EDS23682.1| hypothetical protein HPS_09340 [Haemophilus parasuis 29755]
          Length = 463

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 205/436 (47%), Positives = 289/436 (66%), Gaps = 12/436 (2%)

Query: 36  MNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSR 94
           MN YDS +M D+  S  G E   + +DAD+++LNTC IREKA EKV+S LGR +N K   
Sbjct: 1   MNEYDSSKMADLLNSTHGLELTENPEDADILLLNTCSIREKAQEKVFSQLGRWKNWK--- 57

Query: 95  IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR-VVDTD 153
            K+  DL++ V GCVA  EGE I  R+P V++V GPQT +RLPE++ + R GK  VVD  
Sbjct: 58  -KDKPDLIIGVGGCVASQEGEHIRERAPFVDIVFGPQTLHRLPEMINQIRGGKSSVVDIS 116

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           +   +KF+RL        R  G TAF++I EGC+K+C+FCVVPYTRG E+SR +  V+ E
Sbjct: 117 FPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCSFCVVPYTRGEEVSRPVDDVLFE 171

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
             +L + GV E+ LLGQNVNA+RG+  DG  C+F++LL  ++ I G+ R+RYTTSHP + 
Sbjct: 172 IAQLAEQGVREVNLLGQNVNAYRGETFDGGICSFAELLRLVASIDGIDRVRYTTSHPIEF 231

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
           +D +I+ + D   L+ +LHLP+QSGSDR+L  M R HTA EY+ II ++R  RPDI ISS
Sbjct: 232 TDDIIEVYKDTPELVSFLHLPIQSGSDRVLTMMKRNHTALEYKAIIRKLREARPDIQISS 291

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLC 393
           DFIVGFPGET  DF  TM +++++ +  +FSF YS R GTP +++ + V E+ K ERL  
Sbjct: 292 DFIVGFPGETAQDFEQTMKIIEQVNFDMSFSFIYSARPGTPAADLPDDVTEDEKKERLYR 351

Query: 394 LQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNSKNHNIGDIIK 452
           LQ+++  Q + F+ A +G    +L+E   K+   +L GR+   + V      + IG  + 
Sbjct: 352 LQQRINNQAMQFSRAMLGTEQRILVEGPSKKDIMELTGRTESNRIVNFQGTPNMIGKFVD 411

Query: 453 VRITDVKISTLYGELV 468
           V+ITDV  ++L GE+V
Sbjct: 412 VKITDVYTNSLRGEVV 427


>gi|114331766|ref|YP_747988.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Nitrosomonas eutropha
           C91]
 gi|122313484|sp|Q0AF59|MIAB_NITEC RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|114308780|gb|ABI60023.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Nitrosomonas eutropha
           C91]
          Length = 443

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 209/447 (46%), Positives = 291/447 (65%), Gaps = 16/447 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQ-GYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + ++K++GCQMN YDS +M D+  S+   E     ++ADLI+ NTC +REKA EKV+  L
Sbjct: 4   KLYIKTFGCQMNEYDSAKMADILLSEKNMELTEVPEEADLILFNTCSVREKAQEKVFHDL 63

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE-RA 143
           GR+R+LKNS+     DLL+ V GCVA  EG EI+RR+P V++V GPQT +RLPEL++ R 
Sbjct: 64  GRVRHLKNSK----PDLLIGVGGCVASQEGSEIVRRAPFVDLVFGPQTLHRLPELIDARR 119

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           R G+  VD  +   +KF+RL        R  G TAF++I EGC K+C+FCVVPYTRG E+
Sbjct: 120 RTGQSQVDITFPEIEKFDRLPPA-----RTTGATAFVSIMEGCSKYCSFCVVPYTRGEEV 174

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR L  V+ E   L+  GV E+TLLGQNVNA+  K        F+ LL  + EI GLVR+
Sbjct: 175 SRPLDDVLTEVAGLVIQGVKEVTLLGQNVNAYYDKTSGEGDIDFATLLDYIHEIPGLVRI 234

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           RYTTSHPR+ +  LI+ +  L  L+ ++HLP+QSGSDRIL +M R +T  EY+ II ++R
Sbjct: 235 RYTTSHPREFTARLIETYQRLPKLVGHVHLPIQSGSDRILAAMKRGYTIIEYKSIIRKLR 294

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           ++RP+I+ISSDFIVGFPGETD DF  TM L+D + + ++FSF YSPR GTP S++ +   
Sbjct: 295 TIRPNISISSDFIVGFPGETDTDFEETMKLIDDVKFDESFSFIYSPRPGTPASDLPDDTP 354

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSPWLQSVVLNS 442
             +K  RL  LQ+K++      + + V  I  VL+E    K+  +  GR+    + V+N 
Sbjct: 355 YRIKLARLHQLQEKIQRNAQMISQSMVDTIQRVLVEGPSKKDPNEFCGRTD--NNRVVNF 412

Query: 443 KNHN--IGDIIKVRITDVKISTLYGEL 467
             H   +G  + ++IT V   TL GE+
Sbjct: 413 AGHAGLVGSFVDIKITAVSSHTLRGEI 439


>gi|332993746|gb|AEF03801.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Alteromonas
           sp. SN2]
          Length = 477

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 204/447 (45%), Positives = 293/447 (65%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ ++K++GCQMN YDS +M D+  S  GY    + ++AD+I+LNTC IREKA EKV+  
Sbjct: 3   KKLYIKTWGCQMNEYDSEKMADLLDSTHGYSAAETAEEADVILLNTCSIREKAQEKVFHQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR +NLK  +     +L++ V GCVA  EG  I +R+P V++V GPQT +RLPE++ + 
Sbjct: 63  LGRWKNLKQDK----PELIIGVGGCVASQEGSVIRQRAPYVDLVFGPQTLHRLPEMINQL 118

Query: 144 RFG-KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           + G K V+D  +   +KF+RL        R  G TAF++I EGC K+CTFCVVPYTRG E
Sbjct: 119 KGGEKSVIDVSFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCSKYCTFCVVPYTRGEE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR +  V+ E  +L   GV E+ LLGQNVNA+RG+  DG  C F++LL  ++ I G+ R
Sbjct: 174 VSRPVDDVLLEIAQLAGQGVREVNLLGQNVNAFRGENHDGTVCRFAELLELVAAIDGIDR 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +RYTTSHP + +D +I  +  +  L+ +LHLPVQSGSDRIL  M R HTA EY+  I ++
Sbjct: 234 IRYTTSHPVEFTDDIIDVYATIPELVDHLHLPVQSGSDRILNLMKRGHTAIEYKSKIRKL 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R VRP+I++SSDFI+GFPGETD DF ATMDL+  I Y  +FSF YS R GTP ++ ++ V
Sbjct: 294 RKVRPNISMSSDFIIGFPGETDADFEATMDLIQAIDYDLSFSFIYSARPGTPAADAVDDV 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLVGRSPWLQSVVLN 441
            E+ K +RL  LQ+++ +Q +      VG    +L+E   K+   +L GR+   + V   
Sbjct: 354 TEDAKKQRLYLLQQRINQQALRIARNMVGTEQRILVEGPSKKNPMELSGRTENNRVVNFE 413

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                IG+ + V +TDV  ++L G+++
Sbjct: 414 GTPDMIGEFVDVEVTDVFSNSLRGDVI 440


>gi|332306418|ref|YP_004434269.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332173747|gb|AEE23001.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 477

 Score =  393 bits (1010), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 199/447 (44%), Positives = 295/447 (65%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ F+K++GCQMN YDS +M D+   + GY+  ++ ++AD+I+LNTC IREKA EKV+  
Sbjct: 3   KKLFIKTWGCQMNEYDSQKMADLLDTTHGYQVADTAEEADIILLNTCSIREKAQEKVFHQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR +NLK  +     +L++ V GCVA  EG+ I +R+P V++V GPQT +RLPE++ + 
Sbjct: 63  LGRWKNLKQDK----PELIIGVGGCVASQEGQVIRQRAPFVDLVFGPQTLHRLPEMINQI 118

Query: 144 RFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           + G   V+D  +   +KF+RL        R  G TAF++I EGC K+CTFCVVPYTRG E
Sbjct: 119 KGGSASVIDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCSKYCTFCVVPYTRGEE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR +  V+ E  +L + GV E+ LLGQNVNA+RG   DG  CTF++LL  ++ I G+ R
Sbjct: 174 VSRPVDDVLLEVAQLAEQGVREVNLLGQNVNAFRGPHHDGAICTFAELLEMVASIDGIDR 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +RYTTSHP + +D +I+A+  +  L+ +LHLPVQSGSDR+L  M R HTA EY+  I ++
Sbjct: 234 IRYTTSHPVEFTDDIIEAYATIPELVDHLHLPVQSGSDRVLNLMKRGHTAIEYKSKIRKL 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R +RP++++SSDFI+GFPGE+D DF ATMDL+  + +  +FSF YS R GTP +++ + V
Sbjct: 294 RKIRPNLSMSSDFIIGFPGESDTDFEATMDLIQAMDFDLSFSFIYSARPGTPAADLPDDV 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLVGRSPWLQSVVLN 441
            E  K ERL  LQ ++ +Q +      +     +L+E   K+   +L GR+   + V   
Sbjct: 354 SEATKKERLQLLQNRITQQALRIARNMIDSEQRILVEGPSKKNPMELSGRTENNRVVNFE 413

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                IG  + V+ITDV  ++L G+++
Sbjct: 414 GTPDMIGGFVDVKITDVFANSLRGDVL 440


>gi|332285327|ref|YP_004417238.1| hypothetical protein PT7_2074 [Pusillimonas sp. T7-7]
 gi|330429280|gb|AEC20614.1| hypothetical protein PT7_2074 [Pusillimonas sp. T7-7]
          Length = 497

 Score =  393 bits (1010), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 207/449 (46%), Positives = 292/449 (65%), Gaps = 13/449 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ F++++GCQMN YDS +M D+    QG E   + ++AD+I+ NTC +REKA EKV+S 
Sbjct: 49  RKLFIRTFGCQMNEYDSDKMADVLREDQGVEITQNPEEADIILFNTCSVREKAQEKVFSD 108

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR+++LK +      +L++ V GCVA  EGE I++R+  V+VV GPQT +RLPEL+ R 
Sbjct: 109 LGRVQHLKQA----NPNLIIGVGGCVASQEGEAIVKRASYVDVVFGPQTLHRLPELIARR 164

Query: 144 R-FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           R  G+  VD  +   +KF+ L        R  G TAF++I EGC K+C+FCVVPYTRG E
Sbjct: 165 RESGRSQVDISFPEIEKFDALPPA-----RVDGPTAFVSIMEGCSKYCSFCVVPYTRGAE 219

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT-FSDLLYSLSEIKGLV 261
           +SR    V+ E   L D GV EITLLGQNVNA+RG   +      F+ LL  + EI GL 
Sbjct: 220 VSRPFDDVLMEVADLADQGVKEITLLGQNVNAYRGPMRESANIADFAMLLEYVHEIPGLE 279

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+RYTTSHP++M+  LI+AHG L  L+P+LHLPVQ+GSD IL +M R +T  E++ I+ R
Sbjct: 280 RIRYTTSHPKEMTSRLIEAHGALPKLVPFLHLPVQAGSDTILAAMKRGYTTLEFKSIVRR 339

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R+ RP + +SSDFIVGFPGET+D+F  TM L+  +G+ Q+FSF YS R GTP +++ + 
Sbjct: 340 LRAARPGLTLSSDFIVGFPGETEDEFEKTMKLIRDVGFDQSFSFIYSRRPGTPAADLEDD 399

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440
             + +K ERL  LQ  + EQ  + + + +G    +L+EK  +   K L GR+   + V  
Sbjct: 400 TPKELKLERLHRLQALINEQADAISQSMLGTTQRILVEKPSRRDPKELSGRTENNRIVNF 459

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELVV 469
             +   IG +I VRIT    +TL GE+V 
Sbjct: 460 VGQPRLIGQMIDVRITQTMTNTLKGEIVT 488


>gi|157369463|ref|YP_001477452.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Serratia proteamaculans
           568]
 gi|229890662|sp|A8GB34|MIAB_SERP5 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|157321227|gb|ABV40324.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Serratia proteamaculans
           568]
          Length = 474

 Score =  392 bits (1008), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 205/448 (45%), Positives = 292/448 (65%), Gaps = 14/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS +M D+  S  GY+  ++ ++AD+++LNTC IREKA EKV++ 
Sbjct: 3   KKLHIKTWGCQMNEYDSSKMADLLGSTHGYQWTDNAEEADVLLLNTCSIREKAQEKVFAM 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR R LK    ++   L++ V GCVA  EGE I  R+P V+VV GPQT +RLPE+L   
Sbjct: 63  LGRWRLLK----EKNPALIIGVGGCVASQEGEHIRSRAPCVDVVFGPQTLHRLPEMLNHV 118

Query: 144 RFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           + G R  +VD  +   +KF+RL        R  G TAF++I EGC+K+CTFCVVPYTRG 
Sbjct: 119 Q-GTRSPIVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTFCVVPYTRGE 172

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E+SR    V+ E  +L   GV E+ LLGQNVNA+RG   DG  C+F++LL  ++ I G+ 
Sbjct: 173 EVSRPSDDVLFEVAQLAAQGVREVNLLGQNVNAYRGATYDGGICSFAELLRLVAAIDGID 232

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+RYTTSHP + +D +I  + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II +
Sbjct: 233 RIRYTTSHPIEFTDDIIAVYEDTPELVSFLHLPVQSGSDRILTMMKRAHTALEYKAIIRK 292

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R  RPDI +SSDFI+GFPGET  DF  TM+L+ +I +  +FSF YS R GTP ++M++ 
Sbjct: 293 LRKARPDIQLSSDFIIGFPGETQADFEQTMNLIAEINFDTSFSFIYSSRPGTPAADMVDD 352

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVL 440
           V E+ K +RL  LQ ++ +Q + F+   +G +  +L+E   ++   +L GR+   + V  
Sbjct: 353 VSEDEKKQRLYILQDRINQQVLQFSRRMLGTVQRILVEGTSRKSVMELAGRTACNRMVNF 412

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 IG  + V IT+V  ++L G +V
Sbjct: 413 EGTPDMIGQFVDVEITEVLTNSLRGTVV 440


>gi|52425745|ref|YP_088882.1| MiaB protein [Mannheimia succiniciproducens MBEL55E]
 gi|81386786|sp|Q65RW3|MIAB_MANSM RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|52307797|gb|AAU38297.1| MiaB protein [Mannheimia succiniciproducens MBEL55E]
          Length = 474

 Score =  392 bits (1008), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 204/447 (45%), Positives = 294/447 (65%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           Q+  +K++GCQMN YDS +M D+  S  G E     + AD+++LNTC IREKA EKV+  
Sbjct: 3   QKLHIKTWGCQMNEYDSSKMADLLQSTHGLELTEEAEQADVLLLNTCSIREKAQEKVFHQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK    K+  +L++ V GCVA  EGE I  R+P V+++ GPQT +RLPE++ + 
Sbjct: 63  LGRWKELK----KKNPNLVIGVGGCVASQEGEHIRERAPYVDIIFGPQTLHRLPEMINQI 118

Query: 144 RFG-KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           R G K V+D  +   +KF+RL        +  G TAF++I EGC+K+CT+CVVPYTRG E
Sbjct: 119 RAGEKAVLDISFPEIEKFDRLP-----EPKAEGPTAFVSIMEGCNKYCTYCVVPYTRGEE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR L  V+ E  +L + GV E+ LLGQNVNA+RG   DG  C+F++LL  ++ I G+ R
Sbjct: 174 VSRPLDDVLFEIAQLAEQGVREVNLLGQNVNAYRGPTHDGGICSFAELLRLVAAIDGIDR 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LR+TTS+P + +D +I  + D   L+ +LHLPVQ+GSDRIL  M R HTA EY+ II ++
Sbjct: 234 LRFTTSNPIEFTDDIIDVYRDTPELVSFLHLPVQAGSDRILTMMKRGHTAIEYKSIIRKL 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+VRP+I ISSDFIVGFPGET+++F  TM+L+ ++ +  +FSF YS R GTP ++M + V
Sbjct: 294 RAVRPNIQISSDFIVGFPGETNEEFEQTMNLIQQVNFDMSFSFVYSARPGTPAADMPDDV 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441
            E  K +RL  LQ+++  Q   F+ A +G    VL+E   K+   +L GR+   + V   
Sbjct: 354 TEEEKKQRLYILQQRINNQAAQFSRAMLGTEQRVLVEGPSKKDIMELTGRTENNRIVNFA 413

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                IG  + ++ITDV  ++L G++V
Sbjct: 414 GTPDMIGKFVDIKITDVFTNSLRGDVV 440


>gi|219871156|ref|YP_002475531.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Haemophilus
           parasuis SH0165]
 gi|219691360|gb|ACL32583.1| bifunctional enzyme involved in thiolation andmethylation of tRNA
           [Haemophilus parasuis SH0165]
          Length = 463

 Score =  392 bits (1007), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 204/436 (46%), Positives = 289/436 (66%), Gaps = 12/436 (2%)

Query: 36  MNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSR 94
           MN YDS +M D+  S  G E   + ++AD+++LNTC IREKA EKV+S LGR +N K   
Sbjct: 1   MNEYDSSKMADLLNSTHGLELTENPEEADILLLNTCSIREKAQEKVFSQLGRWKNWK--- 57

Query: 95  IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR-VVDTD 153
            K+  DL++ V GCVA  EGE I  R+P V++V GPQT +RLPE++ + R GK  VVD  
Sbjct: 58  -KDKPDLIIGVGGCVASQEGEHIRERAPFVDIVFGPQTLHRLPEMINQIRGGKSSVVDIS 116

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           +   +KF+RL        R  G TAF++I EGC+K+C+FCVVPYTRG E+SR +  V+ E
Sbjct: 117 FPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCSFCVVPYTRGEEVSRPVDDVLFE 171

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
             +L + GV E+ LLGQNVNA+RG+  DG  C+F++LL  ++ I G+ R+RYTTSHP + 
Sbjct: 172 IAQLAEQGVREVNLLGQNVNAYRGETFDGGICSFAELLRLVASIDGIDRVRYTTSHPIEF 231

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
           +D +I+ + D   L+ +LHLP+QSGSDR+L  M R HTA EY+ II ++R  RPDI ISS
Sbjct: 232 TDDIIEVYKDTPELVSFLHLPIQSGSDRVLTMMKRNHTALEYKAIIRKLREARPDIQISS 291

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLC 393
           DFIVGFPGET  DF  TM +++++ +  +FSF YS R GTP +++ + V E+ K ERL  
Sbjct: 292 DFIVGFPGETAQDFEQTMKIIEQVNFDMSFSFIYSARPGTPAADLPDDVTEDEKKERLYR 351

Query: 394 LQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNSKNHNIGDIIK 452
           LQ+++  Q + F+ A +G    +L+E   K+   +L GR+   + V      + IG  + 
Sbjct: 352 LQQRINNQAMQFSRAMLGTEQRILVEGPSKKDIMELTGRTESNRIVNFQGTPNMIGKFVD 411

Query: 453 VRITDVKISTLYGELV 468
           V+ITDV  ++L GE+V
Sbjct: 412 VKITDVYTNSLRGEVV 427


>gi|296134800|ref|YP_003642042.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Thiomonas intermedia K12]
 gi|295794922|gb|ADG29712.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Thiomonas intermedia K12]
          Length = 439

 Score =  392 bits (1006), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 208/446 (46%), Positives = 292/446 (65%), Gaps = 15/446 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ F+K++GCQMN YDS +M D+   ++GYE   +  +ADLI+LNTC IREKA EKV+S 
Sbjct: 3   KKVFIKTFGCQMNEYDSAKMADVLSAAEGYEPAATPQEADLILLNTCSIREKAQEKVFSD 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-ER 142
           LGR+R LK  +     +LL+ V GCVA  EGE I++R+P V++V GPQT +RLP+L+ +R
Sbjct: 63  LGRLRELKADK----PNLLIGVGGCVASQEGEAIVKRAPYVDLVFGPQTLHRLPQLIAQR 118

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
              G+  VD  +   +KF+ L        R  G +AF++I EGC K+C++CVVPYTRG E
Sbjct: 119 QALGRAQVDISFPEIEKFDHLPPA-----RVEGPSAFVSIMEGCSKYCSYCVVPYTRGEE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR L  V+ E  +L   GV E+TLLGQNVNAW G G +GE   F  LL  ++EI G+ R
Sbjct: 174 VSRPLVDVLTEVAELASLGVREVTLLGQNVNAWLGSG-EGEDFAF--LLECVAEIDGIER 230

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +RYTTSHP++ +  LI A+G +  L+ ++HLPVQ GSDRIL +M R +TA E++ I+ R+
Sbjct: 231 IRYTTSHPKEFTQRLIDAYGRIPKLVNHVHLPVQHGSDRILAAMKRGYTALEFKSIVRRL 290

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+VRPDI I SDFIVGFPGET+ DF   M L++ + +  +FSF +SPR GTP +N+ +  
Sbjct: 291 RAVRPDICIGSDFIVGFPGETEADFAQLMKLIEDMQFDASFSFIFSPRPGTPAANLADDT 350

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSPWLQSVVLN 441
             +VK +RL  LQ ++  Q  + + A V     VLIE    K+  +L GR+   + V L 
Sbjct: 351 PADVKLKRLQTLQAQIETQASAISAAMVDTEQAVLIEGPSKKDPSELQGRTENNRIVHLK 410

Query: 442 SKNHNIGDIIKVRITDVKISTLYGEL 467
           +    IG I+ VRIT     +L GE+
Sbjct: 411 ANARLIGQIVPVRITTAYPHSLRGEV 436


>gi|325914746|ref|ZP_08177084.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Xanthomonas vesicatoria
           ATCC 35937]
 gi|325539023|gb|EGD10681.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Xanthomonas vesicatoria
           ATCC 35937]
          Length = 489

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 206/456 (45%), Positives = 298/456 (65%), Gaps = 14/456 (3%)

Query: 21  CIVPQRFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEK 79
            +V  + ++K++GCQMN YDS +M D+   S+G E  ++ +DAD++++NTC IREKA EK
Sbjct: 32  AVVRGKLYIKTHGCQMNEYDSAKMADVLAASEGLELTDNPEDADVVLVNTCSIREKAQEK 91

Query: 80  VYSFLGRIRNLKNSRIKEGGDLLVV-VAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPE 138
           V+S LGR R LK SR K GG  +++ V GCVA  EGE I++R+P V++V GPQT +RLPE
Sbjct: 92  VFSQLGRWRLLKESRAKAGGTPVIIGVGGCVASQEGEAIVKRAPYVDLVFGPQTLHRLPE 151

Query: 139 LLE-RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197
           L+  R + GK  VD  +   +KF+RL        R  G +AF++I EGC K+C+FCVVPY
Sbjct: 152 LIRARRQSGKSQVDISFPEIEKFDRLP-----EPRADGPSAFVSIMEGCSKYCSFCVVPY 206

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-GLDG-EKCTFSDL---LY 252
           TRG E+SR    V+ E  +L   GV EI LLGQNVNA+RG  G D  E   ++DL   + 
Sbjct: 207 TRGEEVSRPFEDVLVEVAQLAAQGVREINLLGQNVNAYRGAYGADADEAAQYADLGLLIR 266

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
           ++++I+G+ R+R+TTSHP + SD L+ A+  +  L  YLHLPVQ+GSDRIL +M R +TA
Sbjct: 267 TIAQIEGIGRIRFTTSHPLEFSDSLVDAYRGVPQLANYLHLPVQAGSDRILSAMKRGYTA 326

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
            E++  I ++R+VRPDI+ISSDFIVGFPGET+ DF  TM L++ +G+ Q+FSF YS R G
Sbjct: 327 LEFKSKIRKLRAVRPDISISSDFIVGFPGETEADFEKTMKLIEDVGFDQSFSFVYSRRPG 386

Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGR 431
           TP +++ +   + VK  RL  LQ  +     + + + VG +  VL+E    ++  +L G+
Sbjct: 387 TPAADLEDDTPDAVKQARLARLQAHISAHAATISQSMVGSVQRVLVEGPSRRDPNELTGK 446

Query: 432 SPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
           S  ++ V        IG  + V IT+   ++L G +
Sbjct: 447 SENMRPVNFPGNPRLIGQFVDVLITEAMSNSLRGRI 482


>gi|319786436|ref|YP_004145911.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Pseudoxanthomonas
           suwonensis 11-1]
 gi|317464948|gb|ADV26680.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Pseudoxanthomonas
           suwonensis 11-1]
          Length = 484

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 206/450 (45%), Positives = 296/450 (65%), Gaps = 16/450 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + ++K++GCQMN YDS RM D+    +G E  ++ ++AD++++NTC IREKA EKV+S L
Sbjct: 44  KLYIKTHGCQMNEYDSARMADVLAEHEGLELTDNPEEADVVLVNTCSIREKAQEKVFSQL 103

Query: 85  GRIRNLKNSRIKEGG-DLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           GR + LK     EGG ++++ V GCVA  EGE I++R+P V++V GPQT +RLPEL+   
Sbjct: 104 GRWKALK-----EGGREVIIGVGGCVASQEGEAIVKRAPYVDLVFGPQTLHRLPELIRAR 158

Query: 144 RFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           R  +R  VD  +   +KF+RL        R  G +AF++I EGC K+C+FCVVPYTRG E
Sbjct: 159 REQQRPQVDISFPEIEKFDRLP-----EPRAEGPSAFVSIMEGCSKYCSFCVVPYTRGTE 213

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG--EKCTFSDLLYSLSEIKGL 260
           +SR    V+ E  +L   GV EI LLGQNVNA+RG   +G  E      L+ ++++I+G+
Sbjct: 214 VSRPFEDVLVEVAQLAAQGVREINLLGQNVNAYRGPMGEGTEEVADLGLLIRTIAQIEGI 273

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+TTSHP + SD L++A+ D+  L  YLHLPVQSGSDRIL +M R +T  E++Q I 
Sbjct: 274 GRIRFTTSHPLEFSDSLVEAYRDVPQLANYLHLPVQSGSDRILGAMKRGYTTLEFKQKIR 333

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R+VRPDI+ISSDFIVGFPGETD DF  TM L++ +G+ Q+FSF YS R GTP +++ +
Sbjct: 334 KLRAVRPDISISSDFIVGFPGETDADFEKTMKLIEDVGFDQSFSFIYSRRPGTPAADLPD 393

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439
            V +  K  RL  LQ  +       ++A VG +  VL+E   K+   +L G++  ++SV 
Sbjct: 394 DVGDEAKHARLSRLQATINANAARISEAMVGSVQTVLVEGPSKKNPAELTGKTENMRSVN 453

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELVV 469
                  +G  + VRIT    ++L GELV+
Sbjct: 454 FPGNPRLVGQFVDVRITAALTNSLRGELVL 483


>gi|91762485|ref|ZP_01264450.1| tRNA-i(6)A37 modification enzyme [Candidatus Pelagibacter ubique
           HTCC1002]
 gi|91718287|gb|EAS84937.1| tRNA-i(6)A37 modification enzyme [Candidatus Pelagibacter ubique
           HTCC1002]
          Length = 455

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 195/445 (43%), Positives = 294/445 (66%), Gaps = 10/445 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F+K++GCQMN YDS R+ D     G+E+    +DA+  +LNTCHIR+KA EKVY  +
Sbjct: 12  KKIFIKTFGCQMNEYDSNRIFDTVKKIGFEKTEKYEDANCYLLNTCHIRDKAKEKVYHEI 71

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPE-LLERA 143
           GR++ +     +E    +V+VAGCVAQAE +E+L+R P +++V+GPQ+Y+++ E +L   
Sbjct: 72  GRVKKI----FREKKKPIVIVAGCVAQAENQEMLKREPYIDIVIGPQSYHKINEAILNHL 127

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           +  K+  +T++    KF  LS +    N+   V++FLTIQEGCDKFC FCVVPYTRG E 
Sbjct: 128 KNKKKEEETEFDTISKFNYLSQIK---NKDSKVSSFLTIQEGCDKFCHFCVVPYTRGPEY 184

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR   Q+++EA++L+ +G  EI LLGQNVNA+     +G++   SDLL  L     L R+
Sbjct: 185 SRPFDQIINEAKELVQSGAKEIILLGQNVNAY-SYDEEGKEYRLSDLLIKLDSFDKLERI 243

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           RYTTSHP+DM+D LI  +     LMP +HLPVQSGS++IL  MNR+HT  EY  + +++R
Sbjct: 244 RYTTSHPKDMTDDLINVYKTSSKLMPLVHLPVQSGSNKILNLMNRKHTIEEYLLVYEKLR 303

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
            + P I  SSDFI+G+P E + DF+ TM+L++K+ +  ++SF +SPR GT  +N L  VD
Sbjct: 304 KINPKIEFSSDFIIGYPEEDEQDFKMTMELIEKVKFINSYSFIFSPRPGTVAAN-LTLVD 362

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
           +    +RL  +Q+KL   Q+  N +   +I+ VL+E   K+  KL GR+ ++ SV+ +  
Sbjct: 363 QKKSKQRLEIIQEKLFNNQIKKNKSLENKILNVLVENKMKDGIKLFGRTEYMASVIFDGN 422

Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468
             NIG +++V IT    ++L+G+L 
Sbjct: 423 IENIGKLVQVEITSSNQNSLFGKLT 447


>gi|270263724|ref|ZP_06191993.1| hypothetical protein SOD_e03490 [Serratia odorifera 4Rx13]
 gi|270042608|gb|EFA15703.1| hypothetical protein SOD_e03490 [Serratia odorifera 4Rx13]
          Length = 497

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 204/448 (45%), Positives = 292/448 (65%), Gaps = 14/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS +M D+  S  G+E  ++ ++AD+++LNTC IREKA EKV++ 
Sbjct: 26  KKLHIKTWGCQMNEYDSSKMADLLGSTHGFEWTDNAEEADVLLLNTCSIREKAQEKVFAM 85

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK    ++   L++ V GCVA  EGE I  R+P V+VV GPQT +RLPE++   
Sbjct: 86  LGRWKLLK----EKNPALIIGVGGCVASQEGEHIRSRAPCVDVVFGPQTLHRLPEMINHV 141

Query: 144 RFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           R G R  +VD  +   +KF+RL        R  G TAF++I EGC+K+CTFCVVPYTRG 
Sbjct: 142 R-GTRSPIVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTFCVVPYTRGE 195

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E+SR    V+ E  +L   GV E+ LLGQNVNA+RG   DG  C+F++LL  ++ I G+ 
Sbjct: 196 EVSRPSDDVLFEIAQLAAQGVREVNLLGQNVNAYRGATYDGGICSFAELLRLVAAIDGID 255

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHP + +D +I  + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II +
Sbjct: 256 RIRFTTSHPIEFTDDIIAVYQDTPELVSFLHLPVQSGSDRILTMMKRAHTALEYKAIIRK 315

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R  RP+I +SSDFI+GFPGET  DF  TM+LV +I +  +FSF YS R GTP ++M++ 
Sbjct: 316 LRKARPNIQLSSDFIIGFPGETQADFEQTMNLVAEINFDASFSFIYSSRPGTPAADMVDD 375

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVL 440
           V E+ K +RL  LQ ++ +Q + F+   +G +  +L+E   ++   +L GR+   + V  
Sbjct: 376 VSEDEKKQRLYILQDRINQQVLQFSRRMLGTVQRILVEGTSRKSLMELAGRTECNRMVNF 435

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 IG  + V IT+V  +TL G +V
Sbjct: 436 EGTPDMIGQFVDVEITEVMTNTLRGAVV 463


>gi|91775006|ref|YP_544762.1| tRNA-i(6)A37 modification enzyme MiaB [Methylobacillus flagellatus
           KT]
 gi|122985599|sp|Q1H3L6|MIAB_METFK RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|91708993|gb|ABE48921.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Methylobacillus
           flagellatus KT]
          Length = 442

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 209/449 (46%), Positives = 284/449 (63%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           +P+R F+K++GCQMN YDS RM DM   ++G +  ++ ++AD+I+LNTC +REKA EKV+
Sbjct: 3   LPKRIFIKTFGCQMNEYDSSRMLDMLQAAEGMQTTDNPEEADVILLNTCSVREKAQEKVF 62

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S LGR   LK    ++  DL++ V GCVA  EGE I+ R+P V+VV GPQT +RLP+++E
Sbjct: 63  SHLGRFAPLK----EKNPDLVIGVGGCVASQEGESIVARAPYVDVVFGPQTLHRLPDMIE 118

Query: 142 -RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
            + R G   VD  +   +KF+ L        R  G  AFL+I EGC K+CTFCVVPYTRG
Sbjct: 119 SKRRTGISQVDISFPEVEKFDHLP-----PPRVEGAAAFLSIMEGCSKYCTFCVVPYTRG 173

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR    ++ EA +L + GV EITLLGQNVN +R +  DGE    + L+  L+EI  +
Sbjct: 174 DEVSRPFDDILTEAIQLAEQGVKEITLLGQNVNGYRSETADGEMADLALLIEYLAEIPEI 233

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+RYTTSHP +M+  LI  +  +  L+ +LHLPVQ+GSDR+L +M R +T  +Y+ II 
Sbjct: 234 ERIRYTTSHPNEMTPALIDCYARIPKLVSHLHLPVQAGSDRVLMNMKRNYTVLQYKSIIR 293

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R+ RPDI ISSDFIVGFPGET+ DF ATM L+  +G+  +FSF YSPR GTP S + +
Sbjct: 294 KLRAARPDICISSDFIVGFPGETEQDFEATMKLMRDVGFDFSFSFIYSPRPGTPASYLPD 353

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSVV 439
                 K  RL  LQ     Q  + + + VG I  VLIE    K   +L GR+   + V 
Sbjct: 354 DCSPEEKQSRLSRLQALNEAQGKAISASMVGSIQRVLIESVSAKRADELAGRTDNNRIVN 413

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  I   + VRIT+    TL GELV
Sbjct: 414 FPGDTALINQFVNVRITEALSHTLRGELV 442


>gi|264680203|ref|YP_003280113.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Comamonas testosteroni
           CNB-2]
 gi|299533989|ref|ZP_07047341.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Comamonas
           testosteroni S44]
 gi|262210719|gb|ACY34817.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Comamonas testosteroni
           CNB-2]
 gi|298717898|gb|EFI58903.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Comamonas
           testosteroni S44]
          Length = 442

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 207/449 (46%), Positives = 292/449 (65%), Gaps = 15/449 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ F+K++GCQMN YDS +M D+   +QGYE   ++D+ADLI+ NTC +REKA EKV+S 
Sbjct: 3   KKVFIKTFGCQMNEYDSDKMADVLGAAQGYEPTQNVDEADLILFNTCSVREKAQEKVFSD 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-ER 142
           LGRIR+LK   +      L+ V GCVA  EG EI++R+P V+VV GPQT +RLPELL +R
Sbjct: 63  LGRIRHLKEKGV------LIGVGGCVASQEGAEIIKRAPFVDVVFGPQTLHRLPELLNQR 116

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           A   K  VD  +   +KF+ L        R  G +AF++I EGC K+C++CVVPYTRG E
Sbjct: 117 AAKAKPQVDISFPEIEKFDHLPPA-----RVEGASAFVSIMEGCSKYCSYCVVPYTRGEE 171

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-GLDGEKCTFSDLLYSLSEIKGLV 261
           +SR    V+ E   L + GV EITLLGQNVNA+ GK G   E   F+ LL  ++EI G+ 
Sbjct: 172 VSRPFEDVLVEVAGLAEQGVKEITLLGQNVNAYLGKMGDSSEMADFALLLEYVAEIPGIE 231

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+RYTTSHP + +  LI+A+  +  L+ +LHLPVQ GSD+IL +M R +TA EY+  I +
Sbjct: 232 RIRYTTSHPNEFTPRLIEAYAKIPQLVSHLHLPVQHGSDKILMAMKRGYTAMEYKSTIRK 291

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R++RPD+A+SSDFIVGFPGET++DF+  M L+  + +  +FSF +SPR GTP +N+ + 
Sbjct: 292 LRAIRPDLAMSSDFIVGFPGETEEDFQKMMKLIHDVRFDNSFSFIFSPRPGTPAANLHDD 351

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLVGRSPWLQSVVL 440
               VK  RL  LQ  +       ++  VG +  +L+E   K  G +L+GR+   + V  
Sbjct: 352 TPHEVKLRRLQELQAVINTNIKEISEERVGTVQRLLVEGVSKRDGSELMGRTYCNRVVNF 411

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELVV 469
                 IG ++ V+IT+ K  TL GE++V
Sbjct: 412 PGNERLIGQMVDVKITEAKAYTLRGEVLV 440


>gi|121595917|ref|YP_987813.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Acidovorax sp.
           JS42]
 gi|229890416|sp|A1WBW2|MIAB_ACISJ RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|120607997|gb|ABM43737.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Acidovorax sp. JS42]
          Length = 448

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 205/449 (45%), Positives = 292/449 (65%), Gaps = 15/449 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ F+K++GCQMN YDS +M D+   +QGYE  +  + ADLI+ NTC +REKA EKV+S 
Sbjct: 3   KKVFIKTFGCQMNEYDSDKMADVLGAAQGYEPTDDPEQADLILFNTCSVREKAQEKVFSD 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE-R 142
           LGR+++LK+  +      L+ V GCVA  EGEEI++R+P V+VV GPQT +RLPELL  R
Sbjct: 63  LGRVKHLKDKGV------LIGVGGCVASQEGEEIIKRAPFVDVVFGPQTLHRLPELLNAR 116

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           A   +  VD  +   +KF+ L        R  G +AF++I EGC K+C++CVVPYTRG E
Sbjct: 117 AAKARPQVDISFPEIEKFDHLPPA-----RVEGASAFVSIMEGCSKYCSYCVVPYTRGEE 171

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-GLDGEKCTFSDLLYSLSEIKGLV 261
           +SR    V+ E   L D GV E+TLLGQNVNA+ G  G   EK  F+ LL  ++EI G+ 
Sbjct: 172 VSRPFEDVLVEVAGLADQGVKEVTLLGQNVNAYLGAMGDTAEKADFALLLEYVAEIPGIE 231

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHP + +  LI+A+  +  L+ +LHLPVQ GSDRIL +M R +TA EY+  I +
Sbjct: 232 RIRFTTSHPNEFTPRLIEAYAKIPKLVSHLHLPVQHGSDRILMAMKRGYTAMEYKSTIRK 291

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R++RPD+A+SSDFIVGFPGET++DF+  M L+D + +  +FSF +SPR GTP +N+ + 
Sbjct: 292 LRAIRPDMAMSSDFIVGFPGETEEDFQKMMKLIDDVRFDNSFSFIFSPRPGTPAANLHDD 351

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLVGRSPWLQSVVL 440
               VK  RL  LQ  +    +  +   VG +  +L+E   K  G +L+GR+   + V  
Sbjct: 352 TPHEVKLRRLQELQAVINRNILEISQERVGTVQRLLVEGVSKRDGSELMGRTECNRVVNF 411

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELVV 469
                 IG +I V+IT+ +  TL GE+V+
Sbjct: 412 PGHERLIGQMIDVKITEARTYTLRGEVVM 440


>gi|300722332|ref|YP_003711617.1| hypothetical protein XNC1_1347 [Xenorhabdus nematophila ATCC 19061]
 gi|297628834|emb|CBJ89412.1| involved in methylthiolation of isopentenylated A37 derivatives in
           tRNA, Fe-S protein [Xenorhabdus nematophila ATCC 19061]
          Length = 476

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 198/447 (44%), Positives = 292/447 (65%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ ++K++GCQMN YDS +M D+   + GY+  +  ++AD+++LNTC IREKA EKV+  
Sbjct: 5   KKLYIKTWGCQMNEYDSSKMADLLETTHGYQLTDVAEEADILLLNTCSIREKAQEKVFHQ 64

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK+    +  D+++ V GCVA  EG+ I +R+P V+++ GPQT +RLPE++   
Sbjct: 65  LGRWKGLKD----KNPDVIIGVGGCVASQEGDFIRQRAPSVDIIFGPQTLHRLPEMINHV 120

Query: 144 R-FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           +     +VD  +   +KF+RL        R  G +AF++I EGC+K+CTFCVVPYTRG E
Sbjct: 121 KGTHSPIVDISFPEIEKFDRLP-----EPRAEGPSAFVSIMEGCNKYCTFCVVPYTRGEE 175

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR    ++ E  +L   GV E+ LLGQNVNA+RG   DG+ CTF++LL  ++ I G+ R
Sbjct: 176 VSRPCDDILFEIAQLAAQGVREVNLLGQNVNAYRGATFDGDICTFAELLRLVAAIDGIDR 235

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP + +D +I  + D   L+ YLHLPVQSGSDRIL  M R HTA EY+ II R+
Sbjct: 236 IRFTTSHPIEFTDDIIAVYEDTPELVSYLHLPVQSGSDRILTLMKRAHTALEYKGIIRRL 295

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R  RPDI ISSDFI+GFPGET DDF  TM L+  + +  +FSF YS R GTP +++ + V
Sbjct: 296 RKARPDILISSDFIIGFPGETQDDFEKTMKLIADVNFDMSFSFIYSARPGTPAADLPDDV 355

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441
           +E  K +RL  LQ+++ +Q +SF+ A +G    +L+E   ++   +L GR+   + V   
Sbjct: 356 NEEEKKQRLYLLQQRINQQAMSFSRAMIGNTQRILVEGPSRKNIMELSGRTENNRVVNFE 415

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                IG  + V I DV  ++L G+++
Sbjct: 416 GTPDMIGKFVDVEIVDVYANSLRGKVI 442


>gi|71279941|ref|YP_270240.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Colwellia
           psychrerythraea 34H]
 gi|123631590|sp|Q47Y80|MIAB_COLP3 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|71145681|gb|AAZ26154.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Colwellia psychrerythraea
           34H]
          Length = 480

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 198/447 (44%), Positives = 296/447 (66%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ ++K++GCQMN YDS +M ++  S  G+  V   + AD+I+LNTC IREKA EKV+  
Sbjct: 3   KKLYIKTWGCQMNEYDSQKMAELLDSTHGFSLVEEAEQADVILLNTCSIREKAQEKVFHQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR +NLK+ +     DLL+ V GCVA  EG+ I +R+P V+++ GPQT +RLPE+L + 
Sbjct: 63  LGRWKNLKDKK----PDLLIGVGGCVASQEGDSIRKRAPFVDMIFGPQTLHRLPEMLNQL 118

Query: 144 RFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           +  K  ++D  +   +KF+RL        +  G +AF++I EGC K+CTFCVVPYTRG E
Sbjct: 119 QHSKSPIIDVSFPEIEKFDRLP-----EPKADGASAFVSIMEGCSKYCTFCVVPYTRGEE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR L  V+ E  +L + GV E+ LLGQNVNA+RG+  DG  C F+DL+  ++ I G+ R
Sbjct: 174 VSRPLDDVLYEIAQLAEQGVREVNLLGQNVNAYRGETHDGSICRFADLVRLVATIDGIDR 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +RYTTSHP + +D +I+A+ D+  L+ +LHLPVQSG DRIL  M R HTA EY+  I ++
Sbjct: 234 IRYTTSHPVEFTDDIIEAYTDVPELVNHLHLPVQSGCDRILTQMKRGHTALEYKSQIRKL 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           + VRP++++SSDFI+GFPGETD+DF ATMDL+  + +  +FSF YS R GTP +++ + +
Sbjct: 294 KKVRPELSMSSDFIIGFPGETDEDFTATMDLIKAVDFDLSFSFIYSARPGTPAADLPDDI 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLN 441
            +  K +RL  LQ+++  Q +      +     VL+E    K   +L G++   ++V   
Sbjct: 354 SDQTKKDRLKLLQEQITHQALRIARQMLNTEQRVLVEGPSRKNPMELRGKTENNRTVNFV 413

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
           + +  IG  + ++ITDV  ++L GELV
Sbjct: 414 APHSVIGQFVDIKITDVVANSLRGELV 440


>gi|284009227|emb|CBA76316.1| tRNA-methylthiotransferase MiaB protein [Arsenophonus nasoniae]
          Length = 476

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 200/448 (44%), Positives = 297/448 (66%), Gaps = 14/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ ++K++GCQMN YDS +M D+  S  GY+     ++AD+++LNTC IREKA EKV+  
Sbjct: 5   KKLYIKTWGCQMNEYDSSKMADLLNSTHGYQLTEIAEEADILLLNTCSIREKAQEKVFHQ 64

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR +NLK    +   D+++ V GCVA  EG+ I +R+P V+++ GPQT +RLPE++ + 
Sbjct: 65  LGRWKNLK----ELNPDIIIGVGGCVASQEGDFIRQRAPSVDIIFGPQTLHRLPEMINQV 120

Query: 144 RFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           + G R  +VD  +   +KF+RL        R  G +A+++I EGC+K+C+FCVVPYTRG 
Sbjct: 121 K-GTRSPIVDISFPEIEKFDRLP-----EPRAEGPSAYVSIMEGCNKYCSFCVVPYTRGE 174

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E+SR    V+ E  +L   GV EI LLGQNVNA+RG   DG  C+F++LL  ++ I G+ 
Sbjct: 175 EVSRPCDDVLFEIAQLAAQGVREIHLLGQNVNAYRGATFDGGICSFAELLRLVAAIDGVD 234

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHP + SD +I  + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II +
Sbjct: 235 RIRFTTSHPIEFSDDIIAVYEDTPELVSFLHLPVQSGSDRILTMMKRSHTALEYKSIIRK 294

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R  RP+I ISSDFIVGFPGET+DDF+ TM L+  + +  +FSF YSPR GTP +++ + 
Sbjct: 295 LRKARPNILISSDFIVGFPGETEDDFQKTMQLIADVNFDMSFSFIYSPRPGTPAADLPDD 354

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVL 440
           V E+ K +RL  LQ+++ +Q ++++   +G I  +L+E   ++   +L GR+   + V  
Sbjct: 355 VSEDEKKQRLYLLQQRINQQAMNYSRTMLGSIQRILVEGPSRKNIMELSGRAENNRVVNF 414

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
               + IG  + V I DV  ++L G++V
Sbjct: 415 EGTQNMIGKFVDVEIVDVYANSLRGKVV 442


>gi|254525252|ref|ZP_05137307.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Stenotrophomonas sp.
           SKA14]
 gi|219722843|gb|EED41368.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Stenotrophomonas sp.
           SKA14]
          Length = 442

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 205/447 (45%), Positives = 289/447 (64%), Gaps = 12/447 (2%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + ++K++GCQMN YDS +M D+   S G E  +S DDAD+I++NTC IREKA EKV+S L
Sbjct: 4   KLYIKTHGCQMNEYDSAKMADVLAASDGLELTDSPDDADVILVNTCSIREKAQEKVFSQL 63

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           G  + LKN    +G ++++ V GCVA  EGE I++R+P V++V GPQT +RLPEL+   R
Sbjct: 64  GVWKGLKN----KGREVIIGVGGCVASQEGEAIIKRAPFVDLVFGPQTLHRLPELIRARR 119

Query: 145 FGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             KR  VD  +   +KF+RL        R  G +AF++I EGC K+C+FCVVPYTRG E+
Sbjct: 120 EQKRPQVDISFPEIEKFDRLP-----EPRAEGASAFVSIMEGCSKYCSFCVVPYTRGTEV 174

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR    VV E  +L   GV EI LLGQNVNA+RG   DGE      L+ +++EI G+ R+
Sbjct: 175 SRPFEDVVVEVAQLAAQGVREINLLGQNVNAYRGPYGDGEFADLGLLIRTIAEIDGVGRI 234

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+TTSHP + SD LI A  D+  L  +LHLPVQ+GSDR+L +M R +TA E++  I ++R
Sbjct: 235 RFTTSHPLEFSDSLIDAFRDVPQLANFLHLPVQAGSDRVLSAMKRGYTALEFKSKIRKLR 294

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           +VRPDI+ISSDFIVGFPGETD DF  TM L++ IG+  +FSF YS R GTP +++ + + 
Sbjct: 295 AVRPDISISSDFIVGFPGETDADFEKTMKLIEDIGFDHSFSFIYSRRPGTPAADLEDTIS 354

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLNS 442
           +  K  RL  LQ+++       ++  VG +  VL+E    K   +L G++  ++SV   +
Sbjct: 355 DAEKHARLSRLQERINAHAAGISEKMVGTVQTVLVEGPSRKNPNELTGKTENMRSVNFPA 414

Query: 443 KNHNIGDIIKVRITDVKISTLYGELVV 469
               IG  + V IT+   ++L   +V 
Sbjct: 415 PARLIGQFVDVVITEALTNSLRARVVA 441


>gi|71083088|ref|YP_265807.1| tRNA-i(6)A37 modification enzyme [Candidatus Pelagibacter ubique
           HTCC1062]
 gi|123775533|sp|Q4FNN5|MIAB_PELUB RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|71062201|gb|AAZ21204.1| tRNA-i(6)A37 modification enzyme [Candidatus Pelagibacter ubique
           HTCC1062]
          Length = 446

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 196/445 (44%), Positives = 293/445 (65%), Gaps = 10/445 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F+K++GCQMN YDS R+ D     G+E+    +DA+  +LNTCHIR+KA EKVY  +
Sbjct: 3   KKIFIKTFGCQMNEYDSNRIFDTVKKIGFEKTEKYEDANCYLLNTCHIRDKAKEKVYHEI 62

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPE-LLERA 143
           GR++ +     +E    +VVVAGCVAQAE +E+L+R P +++V+GPQ+Y+++ E +L   
Sbjct: 63  GRVKKI----FREKKKPIVVVAGCVAQAENQEMLKREPYIDIVIGPQSYHKINEAILNHL 118

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           +  K+  +T++    KF  LS +    N+   V++FLTIQEGCDKFC FCVVPYTRG E 
Sbjct: 119 KNKKKEEETEFDTISKFNYLSQIK---NKDSKVSSFLTIQEGCDKFCHFCVVPYTRGPEY 175

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR   Q+++EA++L+ +G  EI LLGQNVNA+     +G+K   SDLL  L     L R+
Sbjct: 176 SRPFDQIINEAKELVQSGAKEIILLGQNVNAY-SYDEEGKKYRLSDLLIKLDSFDKLERI 234

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           RYTTSHP+DM+D LI  +     LMP +HLPVQSGS++IL  MNR+HT  EY  + +++R
Sbjct: 235 RYTTSHPKDMTDDLINVYKTSSKLMPLVHLPVQSGSNKILNLMNRKHTIEEYLLVYEKLR 294

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
            + P I  SSDFI+G+P E + DF+ TM+L++K+ +  ++SF +SPR GT  +N L  VD
Sbjct: 295 KINPKIEFSSDFIIGYPEEDEQDFKMTMELIEKVKFINSYSFIFSPRPGTVAAN-LTLVD 353

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
           +    +RL  +Q+KL   Q+  N +   +I+ VL+E   K+  KL GR+ ++ SV+ +  
Sbjct: 354 QKKSKQRLEIIQEKLFNNQIKKNKSLENKILNVLVENKMKDGIKLFGRTEYMTSVIFDGN 413

Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468
             NIG +++V I     ++L+G+L 
Sbjct: 414 IENIGKLVQVEIISSNQNSLFGKLT 438


>gi|194365135|ref|YP_002027745.1| (dimethylallyl)adenosine tRNA methylthiotransferase
           [Stenotrophomonas maltophilia R551-3]
 gi|229891008|sp|B4SQK7|MIAB_STRM5 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|194347939|gb|ACF51062.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Stenotrophomonas
           maltophilia R551-3]
          Length = 472

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 205/447 (45%), Positives = 290/447 (64%), Gaps = 12/447 (2%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + ++K++GCQMN YDS +M D+   S G E  +S DDAD+I++NTC IREKA EKV+S L
Sbjct: 34  KLYIKTHGCQMNEYDSAKMADVLAASDGLELTDSPDDADVILVNTCSIREKAQEKVFSQL 93

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           G  ++LKN    +G ++++ V GCVA  EGE I++R+P V++V GPQT +RLPEL+   R
Sbjct: 94  GVWKSLKN----KGREVIIGVGGCVASQEGEAIIKRAPFVDLVFGPQTLHRLPELIRARR 149

Query: 145 FGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             KR  VD  +   +KF+RL        R  G +AF++I EGC K+C+FCVVPYTRG E+
Sbjct: 150 EQKRPQVDISFPEIEKFDRLP-----EPRADGASAFVSIMEGCSKYCSFCVVPYTRGTEV 204

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR    VV E  +L   GV EI LLGQNVNA+RG   DGE      L+ +++EI G+ R+
Sbjct: 205 SRPFEDVVVEVAQLAAQGVREINLLGQNVNAYRGPYGDGEFADLGLLIRTIAEIDGVGRI 264

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+TTSHP + SD LI A  D+  L  +LHLPVQ+GSDR+L +M R +TA E++  I ++R
Sbjct: 265 RFTTSHPLEFSDSLIDAFRDVPQLANFLHLPVQAGSDRVLSAMKRGYTALEFKSKIRKLR 324

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           +VRPDI+ISSDFIVGFPGETD DF  TM L++ IG+  +FSF YS R GTP +++ + + 
Sbjct: 325 AVRPDISISSDFIVGFPGETDADFEKTMKLIEDIGFDHSFSFIYSRRPGTPAADLEDTIS 384

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLNS 442
           +  K  RL  LQ+++       ++  VG +  VL+E    K   +L G++  ++SV   +
Sbjct: 385 DAEKHARLSRLQERINAHAAGISEKMVGTVQTVLVEGPSRKNPNELTGKTENMRSVNFPA 444

Query: 443 KNHNIGDIIKVRITDVKISTLYGELVV 469
               IG  + V IT+   ++L   +V 
Sbjct: 445 PARLIGQFVDVVITEALTNSLRARVVA 471


>gi|322833884|ref|YP_004213911.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Rahnella sp. Y9602]
 gi|321169085|gb|ADW74784.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Rahnella sp. Y9602]
          Length = 474

 Score =  390 bits (1001), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 199/447 (44%), Positives = 293/447 (65%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS +M D+  S  GY+  ++ ++AD+++LNTC IREKA EKV+S 
Sbjct: 3   KKLHIKTWGCQMNEYDSSKMADLLDSTHGYQLTDNAEEADILLLNTCSIREKAQEKVFSL 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LG  + LK    K+  ++++ V GCVA  EGE + +R+P V++V GPQT +RLPE++   
Sbjct: 63  LGHWKLLK----KKNPNIIIGVGGCVASQEGEMLRKRAPCVDIVFGPQTLHRLPEMVNHV 118

Query: 144 RFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           R  K  VVD  +   +KF+RL        R  G TAF++I EGC+K+C+FCVVPYTRG E
Sbjct: 119 RGTKSPVVDISFPEIEKFDRLP-----EPRADGPTAFVSIMEGCNKYCSFCVVPYTRGEE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR    V+ E  +L   GV E+ LLGQNVNA+RG   +G  CTF++LL  ++ I G+ R
Sbjct: 174 VSRPCDDVLFEVAQLAAQGVREVNLLGQNVNAYRGDAFEGGVCTFAELLRLVAAIDGIDR 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP + +D +I+ + D   ++ +LHLP+QSGSDRIL  M R HT  EY+  I ++
Sbjct: 234 IRFTTSHPVEFTDDIIEVYKDTPEVVSFLHLPIQSGSDRILTMMKRPHTVLEYKSTIRKL 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+ RPDI  SSDFI+GFPGET++DF  TMDL+ ++ Y  +FSF YSPR GTP ++M++ V
Sbjct: 294 RAARPDIHFSSDFIIGFPGETNEDFERTMDLIAQVNYDVSFSFIYSPRPGTPAADMVDDV 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLN 441
             + K +RL  LQ ++ +Q + F+ A +G +  +L+E    K+  +L GR+   + V   
Sbjct: 354 SMDEKKQRLALLQDRITQQVMRFSRATLGTVQRILVEGTSRKDIMELTGRTECNRVVNFE 413

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                IG  + V I DV  ++L G +V
Sbjct: 414 GTPDMIGKFVDVEIVDVYANSLRGVVV 440


>gi|77163772|ref|YP_342297.1| tRNA-i(6)A37 modification enzyme MiaB [Nitrosococcus oceani ATCC
           19707]
 gi|254435338|ref|ZP_05048845.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Nitrosococcus oceani
           AFC27]
 gi|123757951|sp|Q3JEH9|MIAB_NITOC RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|76882086|gb|ABA56767.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Nitrosococcus oceani ATCC
           19707]
 gi|207088449|gb|EDZ65721.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Nitrosococcus oceani
           AFC27]
          Length = 447

 Score =  390 bits (1001), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 200/444 (45%), Positives = 293/444 (65%), Gaps = 12/444 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ ++K++GCQMN YDS RM D+   S G E  +  + A++++LNTC +REKA EKV+S 
Sbjct: 3   KKLYIKTHGCQMNEYDSSRMADVLRESHGLELTSDPEQAEVLLLNTCSVREKAQEKVFSQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR R LK SR     +L++ V GCVA  EGE I  R+P V++V GPQT +RLP +L +A
Sbjct: 63  LGRWRQLKQSR----PELVIGVGGCVASQEGETIRVRAPYVDLVFGPQTIHRLPAMLTQA 118

Query: 144 RFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           +   + VVD  +   +KF++L        R  G TAF+++ EGC K+C+FCVVPYTRG E
Sbjct: 119 KASSQPVVDLSFPEIEKFDKLP-----EPRAEGPTAFVSVMEGCSKYCSFCVVPYTRGEE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           ISR    V+ E   L + GV EITLLGQNVNA+RG   +G+    + L++ ++ I+G+ R
Sbjct: 174 ISRPFDDVIAEIVGLAEQGVREITLLGQNVNAYRGSIGEGDTADLALLIHYVASIEGIER 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP + SD LI+A  ++  L+ +LHLPVQSGSDR+L  M R HT  EY+  + ++
Sbjct: 234 IRFTTSHPVEFSDSLIQAFAEVPALVSHLHLPVQSGSDRMLSLMKRGHTVLEYKAKLRKL 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R VRPDI+ISSDFIVG PGET+ DF+AT+ LVD++G+  +FSF YSPR GTP +++ +  
Sbjct: 294 RQVRPDISISSDFIVGLPGETEADFQATLALVDEVGFDHSFSFIYSPRPGTPAASLPDCT 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLN 441
              +K ERL  LQ +LR  +++ +   V  + +VL+E+   K+   L GR+   + V  +
Sbjct: 354 PIALKKERLAILQGRLRALEIAISRGMVDTVQQVLVERPSKKDPTMLAGRTANNRVVNFS 413

Query: 442 SKNHNIGDIIKVRITDVKISTLYG 465
           +    +G  + +RIT+   ++L G
Sbjct: 414 ASQDMVGQFVNIRITEALPNSLRG 437


>gi|134093658|ref|YP_001098733.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Herminiimonas
           arsenicoxydans]
 gi|229890608|sp|A4G267|MIAB_HERAR RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|133737561|emb|CAL60604.1| putative tRNA-i(6)A37 thiotransferase enzyme MiaB [Herminiimonas
           arsenicoxydans]
          Length = 446

 Score =  389 bits (1000), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 203/451 (45%), Positives = 296/451 (65%), Gaps = 15/451 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ ++K++GCQMN YDS +M D+   S G  + +  +DAD+I+LNTC +REKA EKV+S 
Sbjct: 3   KKIYIKTFGCQMNEYDSDKMADVLNASDGLIKTDKAEDADVILLNTCSVREKAQEKVFSD 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR+R LK  +     DL++ V GCVA  EG+ I++R+P V++V GPQT +RLPE+L++ 
Sbjct: 63  LGRLRELKLLK----PDLMIGVGGCVASQEGDAIIKRAPYVDLVFGPQTLHRLPEMLKQR 118

Query: 144 R-FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           R  G+  VD  +   +KF+ +        +  G TAF++I EGC K+C++CVVPYTRG E
Sbjct: 119 RSTGRSQVDISFPEIEKFDHMPPA-----KVEGATAFVSIMEGCSKYCSYCVVPYTRGEE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR    V+ E   L   GV EITLLGQNVNA+RG+  DGE   F+ L+  ++E++G+ R
Sbjct: 174 VSRRFDDVLTEVAGLEAQGVKEITLLGQNVNAYRGEMADGEIADFALLIEYIAEMEGIER 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +RY TSHP++ +  LI  +  +  L+ +L+LP Q GSDRIL +M R +T+ EY+ I+ R+
Sbjct: 234 IRYVTSHPKEFTQRLIDTYAKVPKLVDHLYLPAQHGSDRILAAMKRGYTSLEYKSILRRL 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+VRP+I+ISSDFIVGFPGETD+DF A M L+D IGY  +FSF +SPR GTP +N+ +  
Sbjct: 294 RAVRPNISISSDFIVGFPGETDEDFEAMMKLIDDIGYDNSFSFIFSPRPGTPAANLADDT 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLVGRSPWLQSVVLN 441
              VK +RL  LQ  + +    ++D  VG +  +L+E   K+   +L GR+   + V  +
Sbjct: 354 PHEVKLKRLQRLQAVIDQNTRRYSDEMVGSVQRILVEGPSKKDADELQGRTENNRVVNFS 413

Query: 442 S---KNHNIGDIIKVRITDVKISTLYGELVV 469
           +     H IG ++ V IT     TL GE+VV
Sbjct: 414 AGPNAAHLIGQMVNVNITQSHAYTLRGEIVV 444


>gi|92114455|ref|YP_574383.1| tRNA-i(6)A37 modification enzyme MiaB [Chromohalobacter salexigens
           DSM 3043]
 gi|91797545|gb|ABE59684.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Chromohalobacter
           salexigens DSM 3043]
          Length = 459

 Score =  389 bits (1000), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 202/457 (44%), Positives = 296/457 (64%), Gaps = 15/457 (3%)

Query: 18  VDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKA 76
            D+  + ++ F+K++GCQMN YDS RM D+   S   E  +   DAD+I+LNTC IREKA
Sbjct: 7   TDRIGMAKKLFIKTHGCQMNEYDSARMADLLGESHALELTDDERDADVILLNTCSIREKA 66

Query: 77  AEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL 136
            EKV+  LGR + LK +      DL++ V GCVA  EGE I +R+P V++V GPQT +RL
Sbjct: 67  QEKVFHQLGRWKKLKAA----NPDLVIGVGGCVASQEGEHIKKRAPHVDMVFGPQTLHRL 122

Query: 137 PELLERARFGKRV--VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCV 194
           P +L+  +  + +  VD  +   +KF+ L           G TAF+++ EGC K+CTFCV
Sbjct: 123 PTMLDSRQGAETISMVDVTFPEIEKFDHLP-----KPTSDGATAFVSVMEGCSKYCTFCV 177

Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL 254
           VPYTRG E+SR    V++E   L D GV EI LLGQNVNA+RG+   G++   ++L+  +
Sbjct: 178 VPYTRGEEVSRPFESVMEEVIHLADQGVREINLLGQNVNAYRGENQLGDEIDLAELIGCV 237

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
           + ++G+ R+R+TTSHP + SD LI+A+G++  L+ +LHLPVQ+GSDRIL +M R HT  E
Sbjct: 238 AAVEGIDRIRFTTSHPVEFSDSLIEAYGEIPELVSHLHLPVQAGSDRILAAMKRGHTVEE 297

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
           Y   ++RIR++RPDI+ SSDFI+GFPGET++DF  TM+L+ +IG+  +FSF YSPR GTP
Sbjct: 298 YVDKLERIRALRPDISFSSDFIIGFPGETEEDFMDTMNLIQRIGFDASFSFVYSPRPGTP 357

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSP 433
            +N+ ++  E  K +RL  LQ++L +Q +  +   VG    +L+     K+ G+L GR+ 
Sbjct: 358 AANLEDETPEATKKQRLAILQERLNQQTMQISRRMVGNTERILVTGFSPKDPGQLSGRTE 417

Query: 434 WLQSVVLNSKNHN--IGDIIKVRITDVKISTLYGELV 468
             + V   + N    IG  + V IT+   ++L G+L 
Sbjct: 418 NNRVVNFRAPNPTELIGYFVDVEITEALPNSLRGDLA 454


>gi|330504998|ref|YP_004381867.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Pseudomonas
           mendocina NK-01]
 gi|328919284|gb|AEB60115.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Pseudomonas
           mendocina NK-01]
          Length = 459

 Score =  389 bits (999), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 205/450 (45%), Positives = 290/450 (64%), Gaps = 17/450 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ +++++GCQMN YDS RM D+    Q  E     ++AD+I+LNTC IREKA +KV+S 
Sbjct: 15  KKLYIETHGCQMNEYDSSRMVDLLGEHQALEVTEKPEEADVILLNTCSIREKAQDKVFSQ 74

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR R LK +      DL++ V GCVA  EG  I  R+P V+VV GPQT +RLPE+++ A
Sbjct: 75  LGRWRELKQA----NPDLVIGVGGCVASQEGAAIRDRAPYVDVVFGPQTLHRLPEMIDAA 130

Query: 144 RFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           R  K   VD  +   +KF+RL        R  G +AF+++ EGC K+CTFCVVPYTRG E
Sbjct: 131 RVTKTAQVDISFPEIEKFDRLP-----EPRVDGPSAFVSVMEGCSKYCTFCVVPYTRGEE 185

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR L  V+ E   L + GV E+TLLGQNVN +RG+  DG    F++LL++++ + G+ R
Sbjct: 186 VSRPLVDVLMEITSLTEKGVKEVTLLGQNVNGYRGEAPDGHIADFAELLHAVAALDGVER 245

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +RYTTSHP + SD +I AH ++  L+ YLHLPVQSGSDRIL +M R HTA EY+  I ++
Sbjct: 246 IRYTTSHPLEFSDAIIAAHAEIPQLVKYLHLPVQSGSDRILAAMKRNHTALEYKSRIRKL 305

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+  PDI ISSDFIVGFPGET+ DF  TM L++ +G+  +FSF YS R GTP +++++  
Sbjct: 306 RAAVPDILISSDFIVGFPGETEKDFEQTMKLIEDVGFDFSFSFIYSSRPGTPAADLVDDT 365

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLN 441
            E VK +RL  LQ ++ +     +   VG +  +L+  +  K+ G L GR+   Q+ ++N
Sbjct: 366 PEEVKKQRLALLQHRINQNGFENSRRMVGTVQRILVSDYSKKDPGMLQGRTE--QNRIVN 423

Query: 442 SKNHN---IGDIIKVRITDVKISTLYGELV 468
            +  N   IG  + V I D    +L G L+
Sbjct: 424 FRCDNPRLIGQFVDVHIDDALPHSLRGTLL 453


>gi|221065180|ref|ZP_03541285.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Comamonas testosteroni
           KF-1]
 gi|220710203|gb|EED65571.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Comamonas testosteroni
           KF-1]
          Length = 442

 Score =  389 bits (999), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 207/449 (46%), Positives = 292/449 (65%), Gaps = 15/449 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ F+K++GCQMN YDS +M D+   +QGYE   ++D+ADLI+ NTC +REKA EKV+S 
Sbjct: 3   KKVFIKTFGCQMNEYDSDKMADVLGAAQGYEPTQNVDEADLILFNTCSVREKAQEKVFSD 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-ER 142
           LGRIR+LK   +      L+ V GCVA  EG EI++R+P V+VV GPQT +RLPELL +R
Sbjct: 63  LGRIRHLKEKGV------LIGVGGCVASQEGAEIIKRAPFVDVVFGPQTLHRLPELLNQR 116

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           A   K  VD  +   +KF+ L        R  G +AF++I EGC K+C++CVVPYTRG E
Sbjct: 117 AAKAKPQVDISFPEIEKFDHLPPA-----RVEGASAFVSIMEGCSKYCSYCVVPYTRGEE 171

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-GLDGEKCTFSDLLYSLSEIKGLV 261
           +SR    V+ E   L + GV EITLLGQNVNA+ GK G   E   F+ LL  ++EI G+ 
Sbjct: 172 VSRPFEDVLVEVAGLAEQGVKEITLLGQNVNAYLGKMGDTSEMADFALLLEYVAEIPGIE 231

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+RYTTSHP + +  LI+A+  +  L+ +LHLPVQ GSD+IL +M R +TA EY+  I +
Sbjct: 232 RIRYTTSHPNEFTPRLIEAYARIPQLVSHLHLPVQHGSDKILMAMKRGYTAMEYKSTIRK 291

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R++RPD+A+SSDFIVGFPGET++DF+  M L+  + +  +FSF +SPR GTP +N+ + 
Sbjct: 292 LRAIRPDLAMSSDFIVGFPGETEEDFQKMMKLIHDVRFDNSFSFIFSPRPGTPAANLHDD 351

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLVGRSPWLQSVVL 440
               VK  RL  LQ  +       ++  VG +  +LIE   K  G +L+GR+   + V  
Sbjct: 352 TPHEVKLRRLQELQAVINSHIKEISEERVGTVQRLLIEGVSKRDGSELMGRTYCNRVVNF 411

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELVV 469
                 IG ++ V+IT+ K  TL GE+++
Sbjct: 412 PGNARLIGQMVDVKITEAKAYTLRGEVLL 440


>gi|222112105|ref|YP_002554369.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Acidovorax
           ebreus TPSY]
 gi|221731549|gb|ACM34369.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Acidovorax ebreus TPSY]
          Length = 448

 Score =  389 bits (999), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 204/449 (45%), Positives = 291/449 (64%), Gaps = 15/449 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ F+K++GCQMN YDS +M D+   +QGYE  +  + ADLI+ NTC +REKA EKV+S 
Sbjct: 3   KKVFIKTFGCQMNEYDSDKMADVLGAAQGYEPTDDPEQADLILFNTCSVREKAQEKVFSD 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE-R 142
           LGR+++LK+  +      L+ V GCVA  EGEEI++R+P V+VV GPQT +RLP+LL  R
Sbjct: 63  LGRVKHLKDKGV------LIGVGGCVASQEGEEIIKRAPFVDVVFGPQTLHRLPDLLNAR 116

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           A   +  VD  +   +KF+ L        R  G +AF++I EGC K+C++CVVPYTRG E
Sbjct: 117 AAKARPQVDISFPEIEKFDHLPPA-----RVEGASAFVSIMEGCSKYCSYCVVPYTRGEE 171

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-GLDGEKCTFSDLLYSLSEIKGLV 261
           +SR    V+ E   L D GV E+TLLGQNVNA+ G  G   EK  F+ LL  ++EI G+ 
Sbjct: 172 VSRPFEDVLVEVAGLADQGVREVTLLGQNVNAYLGAMGDTAEKADFALLLEYVAEIPGIE 231

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHP + +  LI+A+  +  L+ +LHLPVQ GSDRIL +M R +TA EY+  I +
Sbjct: 232 RIRFTTSHPNEFTPRLIEAYAKIPKLVSHLHLPVQHGSDRILMAMKRGYTAMEYKSTIRK 291

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R++RPD+A+SSDFIVGFPGET++DF+  M L+D + +  +FSF +SPR GTP +N+ + 
Sbjct: 292 LRAIRPDMAMSSDFIVGFPGETEEDFQKMMKLIDDVRFDNSFSFIFSPRPGTPAANLHDD 351

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLVGRSPWLQSVVL 440
               VK  RL  LQ  +    +  +   VG +  +L+E   K  G +L+GR+   + V  
Sbjct: 352 TPHEVKLRRLQELQAVINRNILEISQERVGTVQRLLVEGVSKRDGSELMGRTECNRVVNF 411

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELVV 469
                 IG +I V+IT+ +  TL GE+V 
Sbjct: 412 PGHERLIGQMIDVKITEARTYTLRGEVVT 440


>gi|91787018|ref|YP_547970.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Polaromonas
           sp. JS666]
 gi|123355998|sp|Q12EH0|MIAB_POLSJ RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|91696243|gb|ABE43072.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Polaromonas sp. JS666]
          Length = 447

 Score =  389 bits (999), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 202/449 (44%), Positives = 289/449 (64%), Gaps = 15/449 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ F+K++GCQMN YDS +M D+  + +GYE   ++D+ADLI+ NTC +REKA EKV+S 
Sbjct: 3   KKVFIKTFGCQMNEYDSDKMSDVLHAAEGYEPTQNVDEADLILFNTCSVREKAQEKVFSD 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-ER 142
           LGR+++LK   +      L+ V GCVA  EG  I++R+P V+VV GPQT +RLP+LL +R
Sbjct: 63  LGRVKHLKEKGV------LIGVGGCVASQEGAAIIQRAPYVDVVFGPQTLHRLPDLLAKR 116

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           AR  K  VD  +   +KF+ L        R  G +AF++I EGC K+C++CVVPYTRG E
Sbjct: 117 ARLNKPQVDISFPEIEKFDHLPPA-----RVEGASAFVSIMEGCSKYCSYCVVPYTRGEE 171

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-GLDGEKCTFSDLLYSLSEIKGLV 261
           +SR    V+ E   L D GV E+TLLGQNVNA+RG  G   E   F+ LL  +S+I G+ 
Sbjct: 172 VSRPFDDVLVEVAGLADQGVKEVTLLGQNVNAYRGPMGDTAEIADFATLLEYVSDIPGIE 231

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+RY TSHP + +  LI A+  L  L+ +LHLPVQ GSDRIL +M R +TA EY+  I +
Sbjct: 232 RIRYVTSHPNEFTQSLIDAYARLPKLVNHLHLPVQHGSDRILMAMKRGYTAMEYKSTIRK 291

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R++RPD+A+SSDFIVGFPGET+DDF   M L+D +GY  +FSF YSPR GTP + + + 
Sbjct: 292 LRAIRPDLAMSSDFIVGFPGETEDDFNKMMKLIDDVGYDTSFSFIYSPRPGTPAAALHDD 351

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVL 440
               VK  RL  LQ  + +   + + + +G +  +L+E    K+  +L+GR+   + V  
Sbjct: 352 TPHEVKLRRLQHLQATIDDSVRAISASRLGTVQRILVEGASRKDPTELMGRTECNRVVNF 411

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELVV 469
             +   IG ++ + IT     +L GE++ 
Sbjct: 412 KGQPRLIGQMVDITITQATQRSLRGEVLT 440


>gi|88860583|ref|ZP_01135221.1| Fe-S protein [Pseudoalteromonas tunicata D2]
 gi|88817781|gb|EAR27598.1| Fe-S protein [Pseudoalteromonas tunicata D2]
          Length = 476

 Score =  389 bits (998), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 203/447 (45%), Positives = 294/447 (65%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS +M D+   + GY+     ++AD+I+LNTC IREKA EKV+  
Sbjct: 3   KKLHIKTWGCQMNEYDSQKMADLLDATNGYQLTEEAENADVILLNTCSIREKAQEKVFHQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK+    +  DL++ V GCVA  EGE I +R+P V++V GPQT +RLPE++++ 
Sbjct: 63  LGRWKLLKD----DNPDLVIGVGGCVASQEGEVIRQRAPFVDIVFGPQTLHRLPEMIKQV 118

Query: 144 RFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           +  +  VVD  +   +KF+RL        +  G +AF++I EGC K+CTFCVVPYTRG E
Sbjct: 119 QLKQGAVVDISFPEIEKFDRLP-----EPKAEGPSAFVSIMEGCSKYCTFCVVPYTRGEE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR L  V+ E  +L + GV E+ LLGQNVNA+RGK  DGE C FSDLL  ++ I G+ R
Sbjct: 174 VSRPLDDVILEIAQLAEQGVREVNLLGQNVNAYRGKMHDGEICYFSDLLRYVATIDGIDR 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +RYTTSHP + +  +I+A+ D+  L+ +LHLPVQSGSDRIL  M R HTA EY+  I ++
Sbjct: 234 IRYTTSHPIEFTPDIIEAYADIPELVDHLHLPVQSGSDRILALMKRGHTALEYKSTIRKL 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           + VRP++++SSDFI+GFPGET  DF ATM+L++ IG+  +FSF YS R GTP +++ + V
Sbjct: 294 KKVRPNLSMSSDFIIGFPGETTADFEATMNLINDIGFDMSFSFIYSARPGTPAADLPDDV 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLVGRSPWLQSVVLN 441
            E  K ERL  LQ ++ +     +    G    +L+E   K+   +L GR+   + V   
Sbjct: 354 SEQEKKERLYILQNRITQFAQQISRQMFGTEQRILVEGPSKKNPMELRGRTENNRVVNFV 413

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
             +  IG  + V+IT+   ++L G+LV
Sbjct: 414 GDHKLIGQFVDVKITEALPNSLRGDLV 440


>gi|229890695|sp|Q1QV24|MIAB_CHRSD RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
          Length = 448

 Score =  389 bits (998), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 201/450 (44%), Positives = 293/450 (65%), Gaps = 15/450 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ F+K++GCQMN YDS RM D+   S   E  +   DAD+I+LNTC IREKA EKV+  
Sbjct: 3   KKLFIKTHGCQMNEYDSARMADLLGESHALELTDDERDADVILLNTCSIREKAQEKVFHQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK +      DL++ V GCVA  EGE I +R+P V++V GPQT +RLP +L+  
Sbjct: 63  LGRWKKLKAA----NPDLVIGVGGCVASQEGEHIKKRAPHVDMVFGPQTLHRLPTMLDSR 118

Query: 144 RFGKRV--VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           +  + +  VD  +   +KF+ L           G TAF+++ EGC K+CTFCVVPYTRG 
Sbjct: 119 QGAETISMVDVTFPEIEKFDHLP-----KPTSDGATAFVSVMEGCSKYCTFCVVPYTRGE 173

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E+SR    V++E   L D GV EI LLGQNVNA+RG+   G++   ++L+  ++ ++G+ 
Sbjct: 174 EVSRPFESVMEEVIHLADQGVREINLLGQNVNAYRGENQLGDEIDLAELIGCVAAVEGID 233

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHP + SD LI+A+G++  L+ +LHLPVQ+GSDRIL +M R HT  EY   ++R
Sbjct: 234 RIRFTTSHPVEFSDSLIEAYGEIPELVSHLHLPVQAGSDRILAAMKRGHTVEEYVDKLER 293

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           IR++RPDI+ SSDFI+GFPGET++DF  TM+L+ +IG+  +FSF YSPR GTP +N+ ++
Sbjct: 294 IRALRPDISFSSDFIIGFPGETEEDFMDTMNLIQRIGFDASFSFVYSPRPGTPAANLEDE 353

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVL 440
             E  K +RL  LQ++L +Q +  +   VG    +L+     K+ G+L GR+   + V  
Sbjct: 354 TPEATKKQRLAILQERLNQQTMQISRRMVGNTERILVTGFSPKDPGQLSGRTENNRVVNF 413

Query: 441 NSKNHN--IGDIIKVRITDVKISTLYGELV 468
            + N    IG  + V IT+   ++L G+L 
Sbjct: 414 RAPNPTELIGYFVDVEITEALPNSLRGDLA 443


>gi|254282405|ref|ZP_04957373.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [gamma proteobacterium
           NOR51-B]
 gi|219678608|gb|EED34957.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [gamma proteobacterium
           NOR51-B]
          Length = 454

 Score =  389 bits (998), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 209/451 (46%), Positives = 292/451 (64%), Gaps = 17/451 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
            P++ FV+++GCQMN YDS RM+D+   S G E     + AD+++LNTC IREKA EKV+
Sbjct: 5   TPKKLFVQTHGCQMNEYDSARMQDLLGESHGLEVTLDAEQADVLLLNTCSIREKAQEKVF 64

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR ++LK    ++  DL++ V GCVA  EG EI +R+P V+++ GPQT +RLPE++E
Sbjct: 65  HQLGRWKHLK----QKNPDLIIGVGGCVASQEGAEIGKRAPYVDLIFGPQTLHRLPEMIE 120

Query: 142 RARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
             R G+  VVD  +   +KF+RL        +  G TAF++I EGC K+CTFCVVPYTRG
Sbjct: 121 SRRDGEPMVVDVSFPEIEKFDRLP-----EPKVDGPTAFVSIMEGCSKYCTFCVVPYTRG 175

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR +  V+ E   L + GV E+ LLGQNVNA+RG    GE   F+DLL  +  + G+
Sbjct: 176 EEVSRPVDDVIAEIAHLAERGVKEVNLLGQNVNAYRGLNHLGEVVDFADLLRLVDLVDGI 235

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+RYTTSHP + SD +I  + D+  L+ +LHLPVQSGSDRIL +M R HTA EY+  I 
Sbjct: 236 ERIRYTTSHPVEFSDAIIDCYADIPALVDHLHLPVQSGSDRILMAMKRGHTALEYKSKIR 295

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
            +R +RP+I++SSDFI+GFPGETD +F  TM L+D IG+  +FSF YS R GTP S++ +
Sbjct: 296 ALRRIRPNISMSSDFIIGFPGETDAEFAETMKLIDDIGFDNSFSFIYSARPGTPASDLPD 355

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVV 439
              E  K +RL  LQ ++ +Q  + +DA VG    VL+    K + G+L GR+    + V
Sbjct: 356 NTPEATKKQRLQILQGRIAQQARAISDAMVGSRQRVLVTGIAKRDPGQLSGRTE--NNRV 413

Query: 440 LN---SKNHNIGDIIKVRITDVKISTLYGEL 467
           +N   +    IG+ + V I D   ++L G L
Sbjct: 414 VNFCCTDTALIGEFVDVDIVDAYTNSLRGVL 444


>gi|205351955|ref|YP_002225756.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella
           enterica subsp. enterica serovar Gallinarum str. 287/91]
 gi|207856135|ref|YP_002242786.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella
           enterica subsp. enterica serovar Enteritidis str.
           P125109]
 gi|229890644|sp|B5QWC1|MIAB_SALEP RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|229890645|sp|B5R817|MIAB_SALG2 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|205271736|emb|CAR36570.1| MiaB protein (putative tRNA-thiotransferase (or
           tRNA-methylthiotransferase)) [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|206707938|emb|CAR32227.1| MiaB protein (putative tRNA-thiotransferase (or
           tRNA-methylthiotransferase)) [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|326626994|gb|EGE33337.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Salmonella enterica subsp. enterica serovar Gallinarum
           str. 9]
          Length = 474

 Score =  389 bits (998), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 201/448 (44%), Positives = 294/448 (65%), Gaps = 14/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS +M D+   + GY+  +  ++AD+++LNTC IREKA EKV+  
Sbjct: 3   KKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTDVAEEADVLLLNTCSIREKAQEKVFHQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR R LK    ++  DL++ V GCVA  EGE I +R+  V+++ GPQT +RLPE++   
Sbjct: 63  LGRWRLLK----EKNPDLIIGVGGCVASQEGEHIRQRAHYVDIIFGPQTLHRLPEMINSV 118

Query: 144 RFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           R G R  VVD  +   +KF+RL        R  G TAF++I EGC+K+CT+CVVPYTRG 
Sbjct: 119 R-GDRSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTYCVVPYTRGE 172

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E+SR    ++ E  +L   GV E+ LLGQNVNAWRG+  DG   TF+DLL  ++ I G+ 
Sbjct: 173 EVSRPSDDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTTGTFADLLRLVAAIDGID 232

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHP + +D +I+ + D   L+ +LHLPVQSGSDR+L  M R HTA EY+ II +
Sbjct: 233 RIRFTTSHPIEFTDDIIEVYRDTPELVSFLHLPVQSGSDRVLNLMGRTHTALEYKAIIRK 292

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R+ RPDI ISSDFIVGFPGET+DDF  TM L+  + +  ++SF +S R GTP ++M++ 
Sbjct: 293 LRAARPDIQISSDFIVGFPGETNDDFEKTMKLIADVNFDMSYSFIFSARPGTPAADMVDD 352

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVL 440
           V E  K +RL  LQ+++ +Q ++++   +G    +L+E   ++   +L GR+   + V  
Sbjct: 353 VPEEEKKQRLYILQERINQQAMAWSRRMLGTTQRILVEGTSRKNIMELSGRTENNRVVNF 412

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 IG  + V ITDV  ++L G++V
Sbjct: 413 EGTPEMIGKFVDVEITDVYPNSLRGKVV 440


>gi|319791713|ref|YP_004153353.1| tRNA-i(6)a37 thiotransferase enzyme miab [Variovorax paradoxus EPS]
 gi|315594176|gb|ADU35242.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Variovorax paradoxus EPS]
          Length = 455

 Score =  389 bits (998), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 206/449 (45%), Positives = 287/449 (63%), Gaps = 15/449 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ F+K++GCQMN YDS +M D+   +QGYE   ++D+ADLI+ NTC +REKA EKV+S 
Sbjct: 2   KKVFIKTFGCQMNEYDSDKMADVLNAAQGYEPTQNVDEADLILFNTCSVREKAQEKVFSD 61

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-ER 142
           LGR+++LK   +K G      V GCVA  EG  I+ R+P V++V GPQT +RLPE+L +R
Sbjct: 62  LGRVKHLKAKGVKIG------VGGCVASQEGAAIIARAPYVDIVFGPQTLHRLPEMLNDR 115

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            R  +  VD  +   +KF+ L        R  G TAF++I EGC K+C++CVVPYTRG E
Sbjct: 116 ERLNRPQVDISFPEIEKFDHLPPA-----RVEGATAFVSIMEGCSKYCSYCVVPYTRGEE 170

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-GLDGEKCTFSDLLYSLSEIKGLV 261
           ++R L  V+ E   L D GV EITLLGQNVNA+RGK G   E   F+ L+  ++EI G+ 
Sbjct: 171 VNRPLDDVLVEIAGLADQGVREITLLGQNVNAYRGKMGDTAEIADFALLIEYVAEIPGIE 230

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+RYTTSHP + +  LI+A+  +  L+ +LHLPVQ GSDRIL +M R +TA EY+  + +
Sbjct: 231 RIRYTTSHPNEFTPRLIEAYAKVPQLVSHLHLPVQHGSDRILMAMKRGYTAMEYKSTVRK 290

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R++RPD+A+SSDFIVGFPGETD+DF   M L+D   +  +FSF +SPR GTP + + + 
Sbjct: 291 LRAIRPDLALSSDFIVGFPGETDEDFAKMMKLIDDCQFDNSFSFIFSPRPGTPAAALHDD 350

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVL 440
               VK  RL  LQ+ +      F DA VG    VL+E    K+  +L+GR+   + V  
Sbjct: 351 TPHEVKLARLQTLQRVIDGNVRRFGDALVGSTQRVLVEGASRKDANELMGRTACNRVVNF 410

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELVV 469
                 +G +  +RIT     TL GE+V 
Sbjct: 411 EGDARLVGQMTDLRITRSLAYTLRGEVVT 439


>gi|146308794|ref|YP_001189259.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Pseudomonas mendocina
           ymp]
 gi|145576995|gb|ABP86527.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Pseudomonas mendocina
           ymp]
          Length = 459

 Score =  389 bits (998), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 205/450 (45%), Positives = 291/450 (64%), Gaps = 17/450 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ +++++GCQMN YDS RM D+    Q  E     ++AD+I+LNTC IREKA +KV+S 
Sbjct: 15  KKLYIETHGCQMNEYDSSRMVDLLGEHQALEVTEKPEEADVILLNTCSIREKAQDKVFSQ 74

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR R LK +      DL++ V GCVA  EG  I  R+P V+VV GPQT +RLPE+++ A
Sbjct: 75  LGRWRELKQA----NPDLVIGVGGCVASQEGAAIRDRAPYVDVVFGPQTLHRLPEMIDAA 130

Query: 144 RFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           R  K   VD  +   +KF+RL        R  G +AF+++ EGC K+CTFCVVPYTRG E
Sbjct: 131 RTTKTAQVDISFPEIEKFDRLP-----EPRVDGPSAFVSVMEGCSKYCTFCVVPYTRGEE 185

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR L+ V+ E  +L D GV E+TLLGQNVN +RG   DG    F++LL++++ + G+ R
Sbjct: 186 VSRPLADVLLEITQLTDKGVKEVTLLGQNVNGYRGATPDGRIADFAELLHAVAALDGIER 245

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +RYTTSHP + SD +I AH ++  L+ YLHLPVQSGSDRIL +M R HTA EY+  I ++
Sbjct: 246 IRYTTSHPLEFSDAIIAAHAEIPQLVKYLHLPVQSGSDRILAAMKRNHTALEYKSRIRKL 305

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+  PDI ISSDFIVGFPGET+ DF  TM L++ +G+  +FSF YS R GTP +++++  
Sbjct: 306 RAAVPDILISSDFIVGFPGETEKDFEQTMKLIEDVGFDFSFSFIYSSRPGTPAADLVDDT 365

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLN 441
            + VK +RL  LQ ++ +     +   VG +  +L+  +  K+ G L GR+   Q+ ++N
Sbjct: 366 PDEVKKQRLAILQHRINQYGFENSRRMVGTVQRILVSDYSKKDPGMLQGRTE--QNRIVN 423

Query: 442 SKNHN---IGDIIKVRITDVKISTLYGELV 468
            +  N   IG  + V I D    +L G L+
Sbjct: 424 FRCDNPRLIGQFVDVHIDDALPHSLRGTLL 453


>gi|294637486|ref|ZP_06715772.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Edwardsiella tarda ATCC
           23685]
 gi|291089318|gb|EFE21879.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Edwardsiella tarda ATCC
           23685]
          Length = 474

 Score =  388 bits (997), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 203/447 (45%), Positives = 289/447 (64%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS +M D+  S  G E  ++ +DAD+++LNTC IREKA EKV+  
Sbjct: 3   KKLHIKTWGCQMNEYDSSKMADLLGSTHGLELTDNAEDADVLLLNTCSIREKAQEKVFHQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK ++     DL++ V GCVA  EGE I  R+  V+++ GPQT +RLPE++ERA
Sbjct: 63  LGRWKMLKEAK----PDLIIGVGGCVASQEGEHIRERASFVDIIFGPQTLHRLPEMIERA 118

Query: 144 RFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           R     VVD  +   +KF+RL        R  G TAF++I EGC+K+CT+CVVPYTRG E
Sbjct: 119 RGSHSPVVDVSFPEIEKFDRLP-----EPRAEGATAFVSIMEGCNKYCTYCVVPYTRGAE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR    V+ E  +L   GV E+ LLGQNVNA+RG   DG  CTF++LL  ++ I G+ R
Sbjct: 174 VSRPCDDVLFEIAQLAAQGVREVNLLGQNVNAYRGATFDGGICTFAELLRLVAAIDGIDR 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP + SD +I  + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II ++
Sbjct: 234 IRFTTSHPIEFSDDIIAVYEDTPELVSFLHLPVQSGSDRILNLMKRTHTALEYKAIIRKL 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R  RPDI ISSDFIVGFPGET  DF  TM L+  + +  ++SF +S R GTP ++M++ V
Sbjct: 294 RKARPDIQISSDFIVGFPGETQQDFEQTMQLIADVDFDMSYSFIFSARPGTPAADMVDDV 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441
            E  K +RL  LQ+++ +Q + ++    G +  +L+E   ++   +L GR+   + V   
Sbjct: 354 PEEEKKQRLYILQERISQQAMRYSRRMQGTVQRILVEGTSRKNVMELSGRTENNRVVNFA 413

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
            +   IG  + V IT+V  ++L G +V
Sbjct: 414 GQPEMIGRFVDVEITEVLPNSLRGVVV 440


>gi|254482536|ref|ZP_05095775.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [marine gamma
           proteobacterium HTCC2148]
 gi|214037227|gb|EEB77895.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [marine gamma
           proteobacterium HTCC2148]
          Length = 443

 Score =  388 bits (997), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 204/447 (45%), Positives = 291/447 (65%), Gaps = 13/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ ++K++GCQMN YDS RM D+   S       + ++AD+++LNTC IREKA EKV+  
Sbjct: 3   KKLYIKTHGCQMNEYDSARMRDLLEDSHDLVPTENPEEADVLLLNTCSIREKAQEKVFHQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE-R 142
           LGR ++LK    ++  DL++ V GCVA  EGE I +R+P V++V GPQT +RLPE++E R
Sbjct: 63  LGRWKHLK----QKNPDLIIGVGGCVASQEGEAIGKRAPYVDLVFGPQTLHRLPEMMEQR 118

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
              G  +VD  +   +KF+RL        +  G TAF++I EGC K+CTFCVVPYTRG E
Sbjct: 119 GPGGTLIVDVSFPEIEKFDRLP-----EPKVDGPTAFVSIMEGCSKYCTFCVVPYTRGEE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR L  V+ E   L   GV E+ LLGQNVNA+RG   D E   F++LL+ +++I G+ R
Sbjct: 174 VSRPLDDVIAEIAHLAGKGVKEVNLLGQNVNAYRGDSHDCEIVDFAELLHYVAKIPGIER 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +RYTTSHP + SD LI A+ D+  L+ +LHLPVQSGSD+IL +M R HTA EY+  I  +
Sbjct: 234 IRYTTSHPVEFSDALINAYADIPQLVSHLHLPVQSGSDKILAAMKRGHTALEYKSKIRHL 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R +RPDI+ISSDFI+GFPGET+ DF  TM L++ IG+  +FSF YS R GTP S++ +  
Sbjct: 294 RKIRPDISISSDFIIGFPGETEKDFADTMKLIEDIGFDVSFSFIYSARPGTPASDLPDAT 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSVVLN 441
            E+ K +RL  LQ ++ +     +   VG    +L+     K+ G+L GR+   ++V  +
Sbjct: 354 SEDTKKQRLQILQARINQNAQEISRRMVGSTQTILVTGVSRKDPGQLQGRTENNRAVNFS 413

Query: 442 SKNHN-IGDIIKVRITDVKISTLYGEL 467
             +H  IG+ I+V I +   ++L G L
Sbjct: 414 CTDHELIGEFIQVEIIEALPNSLRGVL 440


>gi|229890679|sp|A4XYW1|MIAB_PSEMY RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
          Length = 447

 Score =  388 bits (997), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 205/450 (45%), Positives = 291/450 (64%), Gaps = 17/450 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ +++++GCQMN YDS RM D+    Q  E     ++AD+I+LNTC IREKA +KV+S 
Sbjct: 3   KKLYIETHGCQMNEYDSSRMVDLLGEHQALEVTEKPEEADVILLNTCSIREKAQDKVFSQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR R LK +      DL++ V GCVA  EG  I  R+P V+VV GPQT +RLPE+++ A
Sbjct: 63  LGRWRELKQA----NPDLVIGVGGCVASQEGAAIRDRAPYVDVVFGPQTLHRLPEMIDAA 118

Query: 144 RFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           R  K   VD  +   +KF+RL        R  G +AF+++ EGC K+CTFCVVPYTRG E
Sbjct: 119 RTTKTAQVDISFPEIEKFDRLP-----EPRVDGPSAFVSVMEGCSKYCTFCVVPYTRGEE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR L+ V+ E  +L D GV E+TLLGQNVN +RG   DG    F++LL++++ + G+ R
Sbjct: 174 VSRPLADVLLEITQLTDKGVKEVTLLGQNVNGYRGATPDGRIADFAELLHAVAALDGIER 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +RYTTSHP + SD +I AH ++  L+ YLHLPVQSGSDRIL +M R HTA EY+  I ++
Sbjct: 234 IRYTTSHPLEFSDAIIAAHAEIPQLVKYLHLPVQSGSDRILAAMKRNHTALEYKSRIRKL 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+  PDI ISSDFIVGFPGET+ DF  TM L++ +G+  +FSF YS R GTP +++++  
Sbjct: 294 RAAVPDILISSDFIVGFPGETEKDFEQTMKLIEDVGFDFSFSFIYSSRPGTPAADLVDDT 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLN 441
            + VK +RL  LQ ++ +     +   VG +  +L+  +  K+ G L GR+   Q+ ++N
Sbjct: 354 PDEVKKQRLAILQHRINQYGFENSRRMVGTVQRILVSDYSKKDPGMLQGRTE--QNRIVN 411

Query: 442 SKNHN---IGDIIKVRITDVKISTLYGELV 468
            +  N   IG  + V I D    +L G L+
Sbjct: 412 FRCDNPRLIGQFVDVHIDDALPHSLRGTLL 441


>gi|292493861|ref|YP_003529300.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Nitrosococcus halophilus
           Nc4]
 gi|291582456|gb|ADE16913.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Nitrosococcus halophilus
           Nc4]
          Length = 447

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 200/447 (44%), Positives = 293/447 (65%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ ++K++GCQMN YDS RM D+   S G E  +  + A++++LNTC +REKA EKV+S 
Sbjct: 3   KKLYIKTHGCQMNEYDSTRMADVLRQSHGLELTSDPEQAEVLLLNTCSVREKAQEKVFSQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR R  K +R     +L++ V GCVA  EGE I  R+P V++V GPQT +RLP +L + 
Sbjct: 63  LGRWRQWKQAR----PELIIGVGGCVASQEGETIRARAPYVDLVFGPQTIHRLPAMLTQV 118

Query: 144 RFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
               + V+D  +   +KF++L        R  G  AF+++ EGC K+C+FCVVPYTRG E
Sbjct: 119 SGNHQPVIDISFPEIEKFDKLP-----EPRAEGPMAFVSVMEGCSKYCSFCVVPYTRGEE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           ISR L  V+ E   L + GV E+TLLGQNVNA+RG   +G+    + L+  ++ I+G+ R
Sbjct: 174 ISRPLDDVIAEIVDLAEQGVREVTLLGQNVNAYRGPMGEGDIADLALLITYVASIEGIER 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP + SD LI+A  ++  L+ +LHLPVQSGSDRIL  M R HT  EY+  + R+
Sbjct: 234 IRFTTSHPVEFSDSLIQAFAEVPELVSHLHLPVQSGSDRILSLMKRGHTVLEYKAKLRRL 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R VRPDI+ISSDFI+G PGET+ DF+AT+ LVD++G+  +FSF YSPR GTP +++ ++V
Sbjct: 294 RQVRPDISISSDFIIGLPGETEADFQATLALVDEVGFDHSFSFIYSPRPGTPAASLPDEV 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLN 441
              VK ERL  LQ++LR  +++ +   V  + +VL+E+   K+   L GR+   + V   
Sbjct: 354 PMAVKKERLGILQERLRASEMTISQGMVDTVQQVLVERSSKKDPAMLAGRTANNRVVNFP 413

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
           +    IG  + VRIT+   ++L G ++
Sbjct: 414 ATQGLIGKFVNVRITEALPNSLRGVVI 440


>gi|197284347|ref|YP_002150219.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Proteus
           mirabilis HI4320]
 gi|227358509|ref|ZP_03842834.1| 2-methylthioadenine synthase [Proteus mirabilis ATCC 29906]
 gi|229890603|sp|B4EV28|MIAB_PROMH RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|194681834|emb|CAR41118.1| MiaB protein (methylthiolation of isopentenylated A37 derivatives
           in rRNA) [Proteus mirabilis HI4320]
 gi|227161220|gb|EEI46294.1| 2-methylthioadenine synthase [Proteus mirabilis ATCC 29906]
          Length = 476

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 196/447 (43%), Positives = 294/447 (65%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ ++K++GCQMN YDS +M D+  S  GY+  +  +DAD+++LNTC IREKA EKV+  
Sbjct: 5   KKLYIKTWGCQMNEYDSSKMADLLESTHGYQLTDVAEDADILLLNTCSIREKAQEKVFHQ 64

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR +N K+++     D+++ V GCVA  EGE I +R+  V+++ GPQT +RLPE++ + 
Sbjct: 65  LGRWKNFKDNK----PDIIIGVGGCVASQEGEYIRQRAQCVDIIFGPQTLHRLPEMINQV 120

Query: 144 RFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           +  K  VVD  +   +KF+RL        R  G +AF++I EGC+K+C+FCVVPYTRG E
Sbjct: 121 KGTKSPVVDISFPEIEKFDRLP-----EPRAEGPSAFVSIMEGCNKYCSFCVVPYTRGEE 175

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR    ++ E  +L   GV E+ LLGQNVNA+RG+  DG+ C+F++LL  ++ I G+ R
Sbjct: 176 VSRPCDDILFEIAQLAAQGVREVNLLGQNVNAYRGETFDGQICSFAELLRLVAAIDGIDR 235

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP + +D +I  + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II ++
Sbjct: 236 IRFTTSHPIEFTDDIIAVYEDTPELVSFLHLPVQSGSDRILTLMKRNHTALEYKSIIRKL 295

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R  RPDI ISSDFI+GFPGET DDF  TM L+  + +  +FSF YS R GTP +++ + V
Sbjct: 296 RKARPDILISSDFIIGFPGETQDDFEKTMKLIADVNFDMSFSFIYSARPGTPAADLPDDV 355

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441
            E  K +RL  LQ+++ +Q ++++ A +  +  +L+E   ++   +L GR+   + V   
Sbjct: 356 SEEEKKQRLYLLQQRINQQAMNYSRAMLNSVQRILVEGPSRKNVMELSGRTENNRVVNFE 415

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                IG  + V I DV  ++L G++V
Sbjct: 416 GTPDMIGKFVDVEIVDVYANSLRGKVV 442


>gi|190573591|ref|YP_001971436.1| (dimethylallyl)adenosine tRNA methylthiotransferase
           [Stenotrophomonas maltophilia K279a]
 gi|229891009|sp|B2FJ92|MIAB_STRMK RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|190011513|emb|CAQ45131.1| conserved hypothetical protein [Stenotrophomonas maltophilia K279a]
          Length = 472

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 203/447 (45%), Positives = 289/447 (64%), Gaps = 12/447 (2%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + ++K++GCQMN YDS +M D+   S G E  ++ +DAD+I++NTC IREKA EKV+S L
Sbjct: 34  KLYIKTHGCQMNEYDSAKMADVLAASDGLELTDTPEDADVILVNTCSIREKAQEKVFSQL 93

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           G  + LKN    +G ++++ V GCVA  EGE I++R+P V++V GPQT +RLPEL+   R
Sbjct: 94  GVWKGLKN----KGREVIIGVGGCVASQEGEAIIKRAPFVDLVFGPQTLHRLPELIRARR 149

Query: 145 FGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             KR  VD  +   +KF+RL        R  G +AF++I EGC K+C+FCVVPYTRG E+
Sbjct: 150 EQKRPQVDISFPEIEKFDRLP-----EPRAEGASAFVSIMEGCSKYCSFCVVPYTRGTEV 204

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR    VV E  +L   GV EI LLGQNVNA+RG   DGE      L+ +++EI G+ R+
Sbjct: 205 SRPFEDVVVEVAQLAAQGVREINLLGQNVNAYRGPYGDGEFADLGLLIRTIAEIDGVGRI 264

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+TTSHP + SD LI A  D+  L  +LHLPVQ+GSDR+L +M R +TA E++  I ++R
Sbjct: 265 RFTTSHPLEFSDSLIDAFRDVPQLANFLHLPVQAGSDRVLSAMKRGYTALEFKSKIRKLR 324

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           +VRPDI+ISSDFIVGFPGETD DF  TM L++ IG+  +FSF YS R GTP +++ + + 
Sbjct: 325 AVRPDISISSDFIVGFPGETDADFEKTMKLIEDIGFDHSFSFIYSRRPGTPAADLEDTIS 384

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLNS 442
           +  K  RL  LQ+++       ++  VG +  VL+E    K   +L G++  ++SV   +
Sbjct: 385 DAEKHARLSRLQERINAHAAGISEKMVGTVQTVLVEGPSRKNPNELTGKTENMRSVNFPA 444

Query: 443 KNHNIGDIIKVRITDVKISTLYGELVV 469
               IG  + V IT+   ++L   +V 
Sbjct: 445 PARLIGQFVDVVITEALTNSLRARVVA 471


>gi|120609569|ref|YP_969247.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Acidovorax
           citrulli AAC00-1]
 gi|229890406|sp|A1TKI5|MIAB_ACIAC RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|120588033|gb|ABM31473.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Acidovorax citrulli
           AAC00-1]
          Length = 449

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 206/449 (45%), Positives = 290/449 (64%), Gaps = 15/449 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ FVK++GCQMN YDS +M D+   +QGYE    +++ADLI+ NTC +REKA EKV+S 
Sbjct: 3   KKVFVKTFGCQMNEYDSDKMVDVLNAAQGYEPTQDVEEADLILFNTCSVREKAQEKVFSD 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-ER 142
           LGRI++LK   +K G      V GCVA  EG+EI++R+P V+VV GPQT +RLPELL +R
Sbjct: 63  LGRIKHLKARGVKIG------VGGCVASQEGDEIIKRAPYVDVVFGPQTLHRLPELLAQR 116

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
               +  VD  +   +KF+ L        R  G +AF++I EGC K+C++CVVPYTRG E
Sbjct: 117 EALARPQVDISFPEIEKFDHLPPA-----RVEGASAFVSIMEGCSKYCSYCVVPYTRGEE 171

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-GLDGEKCTFSDLLYSLSEIKGLV 261
           +SR    V+ E   L D GV E+TLLGQNVNA+ GK G   E   F+ LL  +++I G+ 
Sbjct: 172 VSRPFDDVLVEVAGLADQGVKEVTLLGQNVNAYLGKMGGTAEVADFALLLEYVADITGIE 231

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHP + +  LI A+  +  L+ +LHLPVQ GSDRIL +M R +TA EY+  I +
Sbjct: 232 RIRFTTSHPNEFTQRLIDAYARIPKLVSHLHLPVQHGSDRILMAMKRGYTAMEYKSTIRK 291

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R++RPD+A+SSDFIVGFPGET+DDF   M L+D I +  +FSF +SPR GTP +++ + 
Sbjct: 292 LRAIRPDLAMSSDFIVGFPGETEDDFGKMMKLIDDIHFDNSFSFIFSPRPGTPAASLHDD 351

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLVGRSPWLQSVVL 440
               VK  RL  LQ  +     S +++ VG +  +L+E   K  G +L+GR+   + V  
Sbjct: 352 TPHEVKLRRLQELQAVINANIKSISESRVGTVQRILVEGASKRDGSELMGRTECNRVVNF 411

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELVV 469
                 +G ++ V IT+ K  TL GE+V 
Sbjct: 412 AGHPRLVGQMVDVTITEAKAYTLRGEVVT 440


>gi|290476182|ref|YP_003469082.1| tRNA methylthiolation protein [Xenorhabdus bovienii SS-2004]
 gi|289175515|emb|CBJ82318.1| involved in methylthiolation of isopentenylated A37 derivatives in
           tRNA, Fe-S protein [Xenorhabdus bovienii SS-2004]
          Length = 476

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 195/447 (43%), Positives = 290/447 (64%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ ++K++GCQMN YDS +M D+   + GY+  +  ++AD+++LNTC IREKA EKV+  
Sbjct: 5   KKLYIKTWGCQMNEYDSSKMADLLETTHGYQLTDVAEEADILLLNTCSIREKAQEKVFHQ 64

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK+    +  ++++ V GCVA  EG+ I +R+P V+++ GPQT +RLPE++   
Sbjct: 65  LGRWKGLKD----KNPEIIIGVGGCVASQEGDFIRQRAPSVDIIFGPQTLHRLPEMINHV 120

Query: 144 R-FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           +     +VD  +   +KF+R+        R  G +AF++I EGC+K+CTFCVVPYTRG E
Sbjct: 121 KGTHSPIVDISFPEIEKFDRMP-----EPRAEGPSAFVSIMEGCNKYCTFCVVPYTRGEE 175

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR    ++ E  +L   GV ++ LLGQNVNA+RG   DG+ CTF++LL  ++ I G+ R
Sbjct: 176 VSRPCDDILFEIAQLAAQGVRDVNLLGQNVNAYRGAAFDGDICTFAELLRLVAAIDGIDR 235

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP + +D +I  + D   L+ YLHLPVQSGSDRIL  M R HTA EY+ II R+
Sbjct: 236 IRFTTSHPIEFTDDIIAVYEDTPELVSYLHLPVQSGSDRILTQMKRAHTALEYKGIIRRL 295

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R  RPDI ISSDFI+GFPGET DDF  TM L+  + +  +FSF YS R GTP +++ + V
Sbjct: 296 RKARPDILISSDFIIGFPGETQDDFEKTMQLIADVNFDMSFSFIYSARPGTPAADLPDDV 355

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441
            E  K +RL  LQ+++ +Q +SF+ A VG    +L+E   ++   +L GR+   + V   
Sbjct: 356 SEEEKKQRLYLLQQRINQQAMSFSRAMVGSTQRILVEGTSRKNIMELSGRTENNRVVNFE 415

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                IG  +   I DV  ++L G+++
Sbjct: 416 GTPDMIGKFVDAEIVDVYANSLRGKVI 442


>gi|229890673|sp|A9MKB7|MIAB_SALAR RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
          Length = 474

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 201/448 (44%), Positives = 293/448 (65%), Gaps = 14/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS +M D+   + GY+  +  ++AD+++LNTC IREKA EKV+  
Sbjct: 3   KKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTDVAEEADVLLLNTCSIREKAQEKVFHQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR R LK    ++  DL++ V GCVA  EGE I +R+  V+++ GPQT +RLPE++   
Sbjct: 63  LGRWRLLK----EKNPDLIIGVGGCVASQEGEHIRQRAHYVDIIFGPQTLHRLPEMINSV 118

Query: 144 RFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           R G R  VVD  +   +KF+RL        R  G TAF++I EGC+K+CT+CVVPYTRG 
Sbjct: 119 R-GDRSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTYCVVPYTRGE 172

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E+SR    ++ E  +L   GV E+ LLGQNVNAWRG+  DG   TF+DLL  ++ I G+ 
Sbjct: 173 EVSRPSDDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTTGTFADLLRLVAAIDGID 232

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHP + +D +I+ + D   L+ +LHLPVQSGSDR+L  M R HTA EY+ II +
Sbjct: 233 RIRFTTSHPIEFTDDIIEVYRDTPELVSFLHLPVQSGSDRVLNLMGRTHTALEYKAIIRK 292

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R+ RPDI ISSDFIVGFPGET DDF  TM L+  + +  ++SF +S R GTP ++M++ 
Sbjct: 293 LRAARPDIQISSDFIVGFPGETSDDFEKTMKLIADVNFDMSYSFIFSARPGTPAADMVDD 352

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVL 440
           V E  K +RL  LQ+++ +Q ++++   +G    +L+E   ++   +L GR+   + V  
Sbjct: 353 VPEEEKKQRLYILQERINQQAMAWSRRMLGSTQRILVEGTSRKNIMELSGRTENNRVVNF 412

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 IG  + V ITDV  ++L G++V
Sbjct: 413 EGTPEMIGKFVDVEITDVYPNSLRGKVV 440


>gi|161504166|ref|YP_001571278.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella
           enterica subsp. arizonae serovar 62:z4,z23:-- str.
           RSK2980]
 gi|160865513|gb|ABX22136.1| hypothetical protein SARI_02272 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 488

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 201/448 (44%), Positives = 293/448 (65%), Gaps = 14/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS +M D+   + GY+  +  ++AD+++LNTC IREKA EKV+  
Sbjct: 17  KKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTDVAEEADVLLLNTCSIREKAQEKVFHQ 76

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR R LK    ++  DL++ V GCVA  EGE I +R+  V+++ GPQT +RLPE++   
Sbjct: 77  LGRWRLLK----EKNPDLIIGVGGCVASQEGEHIRQRAHYVDIIFGPQTLHRLPEMINSV 132

Query: 144 RFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           R G R  VVD  +   +KF+RL        R  G TAF++I EGC+K+CT+CVVPYTRG 
Sbjct: 133 R-GDRSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTYCVVPYTRGE 186

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E+SR    ++ E  +L   GV E+ LLGQNVNAWRG+  DG   TF+DLL  ++ I G+ 
Sbjct: 187 EVSRPSDDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTTGTFADLLRLVAAIDGID 246

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHP + +D +I+ + D   L+ +LHLPVQSGSDR+L  M R HTA EY+ II +
Sbjct: 247 RIRFTTSHPIEFTDDIIEVYRDTPELVSFLHLPVQSGSDRVLNLMGRTHTALEYKAIIRK 306

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R+ RPDI ISSDFIVGFPGET DDF  TM L+  + +  ++SF +S R GTP ++M++ 
Sbjct: 307 LRAARPDIQISSDFIVGFPGETSDDFEKTMKLIADVNFDMSYSFIFSARPGTPAADMVDD 366

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVL 440
           V E  K +RL  LQ+++ +Q ++++   +G    +L+E   ++   +L GR+   + V  
Sbjct: 367 VPEEEKKQRLYILQERINQQAMAWSRRMLGSTQRILVEGTSRKNIMELSGRTENNRVVNF 426

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 IG  + V ITDV  ++L G++V
Sbjct: 427 EGTPEMIGKFVDVEITDVYPNSLRGKVV 454


>gi|16759622|ref|NP_455239.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella
           enterica subsp. enterica serovar Typhi str. CT18]
 gi|29142605|ref|NP_805947.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella
           enterica subsp. enterica serovar Typhi str. Ty2]
 gi|62179268|ref|YP_215685.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|161615109|ref|YP_001589074.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella
           enterica subsp. enterica serovar Paratyphi B str. SPB7]
 gi|25305454|pir||AC0584 MiaB protein (probable tRNA-thiotransferase (or
           tRNA-methylthiotransferase)) miaB [imported] -
           Salmonella enterica subsp. enterica serovar Typhi
           (strain CT18)
 gi|16501914|emb|CAD05141.1| MiaB protein (putative tRNA-thiotransferase (or
           tRNA-methylthiotransferase)) [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29138236|gb|AAO69807.1| MiaB protein [Salmonella enterica subsp. enterica serovar Typhi
           str. Ty2]
 gi|62126901|gb|AAX64604.1| methylthiolation of isopentenylated A37 derivatives in rRNA
           [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|161364473|gb|ABX68241.1| hypothetical protein SPAB_02876 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|320084943|emb|CBY94732.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           tRNA-i(6)A37 methylthiotransferase [Salmonella enterica
           subsp. enterica serovar Weltevreden str. 2007-60-3289-1]
 gi|322713735|gb|EFZ05306.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. A50]
          Length = 488

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 201/448 (44%), Positives = 293/448 (65%), Gaps = 14/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS +M D+   + GY+  +  ++AD+++LNTC IREKA EKV+  
Sbjct: 17  KKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTDVAEEADVLLLNTCSIREKAQEKVFHQ 76

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR R LK    ++  DL++ V GCVA  EGE I +R+  V+++ GPQT +RLPE++   
Sbjct: 77  LGRWRLLK----EKNPDLIIGVGGCVASQEGEHIRQRAHYVDIIFGPQTLHRLPEMINSV 132

Query: 144 RFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           R G R  VVD  +   +KF+RL        R  G TAF++I EGC+K+CT+CVVPYTRG 
Sbjct: 133 R-GDRSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTYCVVPYTRGE 186

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E+SR    ++ E  +L   GV E+ LLGQNVNAWRG+  DG   TF+DLL  ++ I G+ 
Sbjct: 187 EVSRPSDDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTTGTFADLLRLVAAIDGID 246

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHP + +D +I+ + D   L+ +LHLPVQSGSDR+L  M R HTA EY+ II +
Sbjct: 247 RIRFTTSHPIEFTDDIIEVYRDTPELVSFLHLPVQSGSDRVLNLMGRTHTALEYKAIIRK 306

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R+ RPDI ISSDFIVGFPGET DDF  TM L+  + +  ++SF +S R GTP ++M++ 
Sbjct: 307 LRAARPDIQISSDFIVGFPGETTDDFEKTMKLIADVNFDMSYSFIFSARPGTPAADMVDD 366

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVL 440
           V E  K +RL  LQ+++ +Q ++++   +G    +L+E   ++   +L GR+   + V  
Sbjct: 367 VPEEEKKQRLYILQERINQQAMAWSRRMLGTTQRILVEGTSRKNIMELSGRTENNRVVNF 426

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 IG  + V ITDV  ++L G++V
Sbjct: 427 EGTPEMIGKFVDVEITDVYPNSLRGKVV 454


>gi|37525279|ref|NP_928623.1| tRNA-methylthiotransferase MiaB protein [Photorhabdus luminescens
           subsp. laumondii TTO1]
 gi|81416679|sp|Q7MB63|MIAB_PHOLL RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|36784706|emb|CAE13606.1| tRNA-methylthiotransferase MiaB protein [Photorhabdus luminescens
           subsp. laumondii TTO1]
          Length = 476

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 198/448 (44%), Positives = 296/448 (66%), Gaps = 14/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ ++K++GCQMN YDS +M D+  S  GY+  +  ++AD+++LNTC IREKA EKV+  
Sbjct: 5   KKLYIKTWGCQMNEYDSSKMADLLESTHGYQLTDVAEEADILLLNTCSIREKAQEKVFHQ 64

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR +NLK++      DL++ V GCVA  EG+ I +R+  V+++ GPQT +RLPE++ + 
Sbjct: 65  LGRWKNLKDT----NPDLIIGVGGCVASQEGDFIRQRAQCVDIIFGPQTLHRLPEMINQV 120

Query: 144 RFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           + G R  VVD  +   +KF+RL        R  G +AF++I EGC+K+CTFCVVPYTRG 
Sbjct: 121 K-GTRSPVVDISFPEIEKFDRLP-----EPRAEGPSAFVSIMEGCNKYCTFCVVPYTRGE 174

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E+SR    V+ E  +L   GV E+ LLGQNVNA+RG   DG+ C+F++L+  ++ I G+ 
Sbjct: 175 EVSRPCDDVLFEIAQLAAQGVREVNLLGQNVNAYRGATYDGDICSFAELIRLVAAIDGID 234

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHP + +D +I  + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II +
Sbjct: 235 RIRFTTSHPIEFTDDIIAVYEDTPELVSFLHLPVQSGSDRILTLMKRAHTALEYKSIIRK 294

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R  RPDI ISSDFI+GFPGET DDF  TM L+  + +  ++SF YS R GTP +++ + 
Sbjct: 295 LRKARPDILISSDFIIGFPGETQDDFEKTMKLIADVNFDMSYSFIYSARPGTPAADLPDD 354

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVL 440
           V E  K +RL  LQ+++ +Q +S++ A +G +  +L+E   ++   +L GR+   + V  
Sbjct: 355 VSEEEKKQRLYLLQQRINQQAMSYSRAMLGSVQRILVEGTSRKNVMELSGRTENNRVVNF 414

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
             +   IG  + V I DV  ++L G+++
Sbjct: 415 EGQPDMIGKFVDVEIVDVYANSLRGKVI 442


>gi|16764047|ref|NP_459662.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella
           enterica subsp. enterica serovar Typhimurium str. LT2]
 gi|167550789|ref|ZP_02344545.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA29]
 gi|167990681|ref|ZP_02571781.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Salmonella enterica
           subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168231688|ref|ZP_02656746.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Salmonella enterica
           subsp. enterica serovar Kentucky str. CDC 191]
 gi|168236659|ref|ZP_02661717.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. SL480]
 gi|168240521|ref|ZP_02665453.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL486]
 gi|168264394|ref|ZP_02686367.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Salmonella enterica
           subsp. enterica serovar Hadar str. RI_05P066]
 gi|168465849|ref|ZP_02699731.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Salmonella enterica
           subsp. enterica serovar Newport str. SL317]
 gi|168820202|ref|ZP_02832202.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Salmonella enterica
           subsp. enterica serovar Weltevreden str. HI_N05-537]
 gi|194446753|ref|YP_002039914.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella
           enterica subsp. enterica serovar Newport str. SL254]
 gi|194450672|ref|YP_002044705.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL476]
 gi|194471594|ref|ZP_03077578.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Salmonella enterica
           subsp. enterica serovar Kentucky str. CVM29188]
 gi|194734184|ref|YP_002113781.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           CVM19633]
 gi|197248340|ref|YP_002145647.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella
           enterica subsp. enterica serovar Agona str. SL483]
 gi|197263845|ref|ZP_03163919.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA23]
 gi|198245491|ref|YP_002214659.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella
           enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|200391054|ref|ZP_03217665.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Salmonella enterica
           subsp. enterica serovar Virchow str. SL491]
 gi|204930519|ref|ZP_03221449.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Salmonella enterica
           subsp. enterica serovar Javiana str. GA_MM04042433]
 gi|213425074|ref|ZP_03357824.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Salmonella enterica
           subsp. enterica serovar Typhi str. E02-1180]
 gi|213583025|ref|ZP_03364851.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-0664]
 gi|213647865|ref|ZP_03377918.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Salmonella enterica
           subsp. enterica serovar Typhi str. J185]
 gi|213859100|ref|ZP_03385071.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Salmonella enterica
           subsp. enterica serovar Typhi str. M223]
 gi|238911620|ref|ZP_04655457.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Salmonella enterica
           subsp. enterica serovar Tennessee str. CDC07-0191]
 gi|289825599|ref|ZP_06544785.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella
           enterica subsp. enterica serovar Typhi str. E98-3139]
 gi|81549773|sp|Q9RCI2|MIAB_SALTY RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|229890639|sp|B5EZB2|MIAB_SALA4 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|229890643|sp|B5FNB2|MIAB_SALDC RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|229890646|sp|B4TB74|MIAB_SALHS RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|229890647|sp|B4SYN0|MIAB_SALNS RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|229890660|sp|B4TPZ0|MIAB_SALSV RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|229890665|sp|Q8Z8G5|MIAB_SALTI RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|229890668|sp|A9MUH8|MIAB_SALPB RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|229890674|sp|Q57RQ7|MIAB_SALCH RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|6523483|emb|CAB62263.1| MiaB protein [Salmonella typhimurium]
 gi|16419184|gb|AAL19621.1| methylthiolation of isopentenylated A37 derivatives in rRNA
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. LT2]
 gi|194405416|gb|ACF65638.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
 gi|194408976|gb|ACF69195.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|194457958|gb|EDX46797.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Salmonella enterica
           subsp. enterica serovar Kentucky str. CVM29188]
 gi|194709686|gb|ACF88907.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|195632043|gb|EDX50563.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Salmonella enterica
           subsp. enterica serovar Newport str. SL317]
 gi|197212043|gb|ACH49440.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
 gi|197242100|gb|EDY24720.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA23]
 gi|197290335|gb|EDY29691.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. SL480]
 gi|197940007|gb|ACH77340.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|199603499|gb|EDZ02045.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Salmonella enterica
           subsp. enterica serovar Virchow str. SL491]
 gi|204320453|gb|EDZ05656.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Salmonella enterica
           subsp. enterica serovar Javiana str. GA_MM04042433]
 gi|205324195|gb|EDZ12034.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA29]
 gi|205330871|gb|EDZ17635.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Salmonella enterica
           subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205334151|gb|EDZ20915.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Salmonella enterica
           subsp. enterica serovar Kentucky str. CDC 191]
 gi|205339926|gb|EDZ26690.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL486]
 gi|205343227|gb|EDZ29991.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Salmonella enterica
           subsp. enterica serovar Weltevreden str. HI_N05-537]
 gi|205347114|gb|EDZ33745.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Salmonella enterica
           subsp. enterica serovar Hadar str. RI_05P066]
 gi|261245942|emb|CBG23744.1| MiaB protein (putative tRNA-thiotransferase (or
           tRNA-methylthiotransferase)) [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267992407|gb|ACY87292.1| rRNA modification protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|301157270|emb|CBW16758.1| MiaB protein (putative tRNA-thiotransferase (or
           tRNA-methylthiotransferase)) [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|312911702|dbj|BAJ35676.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           T000240]
 gi|321226251|gb|EFX51302.1| tRNA-i(6)A37 methylthiotransferase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|322613204|gb|EFY10147.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           315996572]
 gi|322621272|gb|EFY18129.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-1]
 gi|322623692|gb|EFY20530.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-3]
 gi|322628964|gb|EFY25743.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-4]
 gi|322631686|gb|EFY28440.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           515920-1]
 gi|322637578|gb|EFY34280.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           515920-2]
 gi|322641918|gb|EFY38548.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella
           enterica subsp. enterica serovar Montevideo str. 531954]
 gi|322646762|gb|EFY43268.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322651463|gb|EFY47843.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           OH_2009072675]
 gi|322653086|gb|EFY49420.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322658807|gb|EFY55062.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella
           enterica subsp. enterica serovar Montevideo str. 19N]
 gi|322664924|gb|EFY61117.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           81038-01]
 gi|322668926|gb|EFY65078.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MD_MDA09249507]
 gi|322670568|gb|EFY66701.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella
           enterica subsp. enterica serovar Montevideo str. 414877]
 gi|322675309|gb|EFY71385.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella
           enterica subsp. enterica serovar Montevideo str. 366867]
 gi|322682220|gb|EFY78245.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella
           enterica subsp. enterica serovar Montevideo str. 413180]
 gi|322684951|gb|EFY80948.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella
           enterica subsp. enterica serovar Montevideo str. 446600]
 gi|323128987|gb|ADX16417.1| rRNA modification protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
 gi|323193991|gb|EFZ79193.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           609458-1]
 gi|323197917|gb|EFZ83039.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           556150-1]
 gi|323202036|gb|EFZ87096.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella
           enterica subsp. enterica serovar Montevideo str. 609460]
 gi|323207169|gb|EFZ92122.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           507440-20]
 gi|323210924|gb|EFZ95787.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella
           enterica subsp. enterica serovar Montevideo str. 556152]
 gi|323214304|gb|EFZ99055.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB101509-0077]
 gi|323219291|gb|EGA03782.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB102109-0047]
 gi|323225498|gb|EGA09728.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB110209-0055]
 gi|323231057|gb|EGA15173.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB111609-0052]
 gi|323234111|gb|EGA18200.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           2009083312]
 gi|323238194|gb|EGA22252.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           2009085258]
 gi|323242572|gb|EGA26596.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           315731156]
 gi|323248451|gb|EGA32385.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2009159199]
 gi|323251334|gb|EGA35206.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008282]
 gi|323259262|gb|EGA42905.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008283]
 gi|323262137|gb|EGA45699.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008284]
 gi|323264851|gb|EGA48352.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008285]
 gi|323272312|gb|EGA55719.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008287]
 gi|326622414|gb|EGE28759.1| rRNA modification protein [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
 gi|332987614|gb|AEF06597.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella
           enterica subsp. enterica serovar Typhimurium str. UK-1]
          Length = 474

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 201/448 (44%), Positives = 293/448 (65%), Gaps = 14/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS +M D+   + GY+  +  ++AD+++LNTC IREKA EKV+  
Sbjct: 3   KKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTDVAEEADVLLLNTCSIREKAQEKVFHQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR R LK    ++  DL++ V GCVA  EGE I +R+  V+++ GPQT +RLPE++   
Sbjct: 63  LGRWRLLK----EKNPDLIIGVGGCVASQEGEHIRQRAHYVDIIFGPQTLHRLPEMINSV 118

Query: 144 RFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           R G R  VVD  +   +KF+RL        R  G TAF++I EGC+K+CT+CVVPYTRG 
Sbjct: 119 R-GDRSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTYCVVPYTRGE 172

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E+SR    ++ E  +L   GV E+ LLGQNVNAWRG+  DG   TF+DLL  ++ I G+ 
Sbjct: 173 EVSRPSDDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTTGTFADLLRLVAAIDGID 232

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHP + +D +I+ + D   L+ +LHLPVQSGSDR+L  M R HTA EY+ II +
Sbjct: 233 RIRFTTSHPIEFTDDIIEVYRDTPELVSFLHLPVQSGSDRVLNLMGRTHTALEYKAIIRK 292

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R+ RPDI ISSDFIVGFPGET DDF  TM L+  + +  ++SF +S R GTP ++M++ 
Sbjct: 293 LRAARPDIQISSDFIVGFPGETTDDFEKTMKLIADVNFDMSYSFIFSARPGTPAADMVDD 352

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVL 440
           V E  K +RL  LQ+++ +Q ++++   +G    +L+E   ++   +L GR+   + V  
Sbjct: 353 VPEEEKKQRLYILQERINQQAMAWSRRMLGTTQRILVEGTSRKNIMELSGRTENNRVVNF 412

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 IG  + V ITDV  ++L G++V
Sbjct: 413 EGTPEMIGKFVDVEITDVYPNSLRGKVV 440


>gi|229890667|sp|Q5PLT0|MIAB_SALPA RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|229890669|sp|B5BCD1|MIAB_SALPK RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
          Length = 474

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 201/448 (44%), Positives = 293/448 (65%), Gaps = 14/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS +M D+   + GY+  +  ++AD+++LNTC IREKA EKV+  
Sbjct: 3   KKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTDVAEEADVLLLNTCSIREKAQEKVFHQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR R LK    ++  DL++ V GCVA  EGE I +R+  V+++ GPQT +RLPE++   
Sbjct: 63  LGRWRLLK----EKNPDLIIGVGGCVASQEGEHIRQRAHYVDIIFGPQTSHRLPEMINSV 118

Query: 144 RFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           R G R  VVD  +   +KF+RL        R  G TAF++I EGC+K+CT+CVVPYTRG 
Sbjct: 119 R-GDRSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTYCVVPYTRGE 172

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E+SR    ++ E  +L   GV E+ LLGQNVNAWRG+  DG   TF+DLL  ++ I G+ 
Sbjct: 173 EVSRPSDDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTTGTFADLLRLVAAIDGID 232

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHP + +D +I+ + D   L+ +LHLPVQSGSDR+L  M R HTA EY+ II +
Sbjct: 233 RIRFTTSHPIEFTDDIIEVYRDTPELVSFLHLPVQSGSDRVLNLMGRTHTALEYKAIIRK 292

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R+ RPDI ISSDFIVGFPGET DDF  TM L+  + +  ++SF +S R GTP ++M++ 
Sbjct: 293 LRAARPDIQISSDFIVGFPGETTDDFEKTMKLIADVNFDMSYSFIFSARPGTPAADMVDD 352

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVL 440
           V E  K +RL  LQ+++ +Q ++++   +G    +L+E   ++   +L GR+   + V  
Sbjct: 353 VPEEEKKQRLYILQERINQQAMAWSRRMLGTTQRILVEGTSRKNIMELSGRTENNRVVNF 412

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 IG  + V ITDV  ++L G++V
Sbjct: 413 EGTPEMIGKFVDVEITDVYPNSLRGKVV 440


>gi|289165670|ref|YP_003455808.1| isopentenyl-adenosine A37 tRNA methylthiolase [Legionella
           longbeachae NSW150]
 gi|288858843|emb|CBJ12757.1| isopentenyl-adenosine A37 tRNA methylthiolase [Legionella
           longbeachae NSW150]
          Length = 447

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 204/448 (45%), Positives = 288/448 (64%), Gaps = 12/448 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ ++K+ GCQMN YDS +M D+   S G  + + ++DAD+I+LNTC IREKA EKV+S 
Sbjct: 3   KKLYIKTNGCQMNEYDSSKMADVLLQSHGLVKTDQVEDADVILLNTCSIREKAQEKVFSQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-ER 142
           LG+ R  K     +   +++ V GCVA  EG +I++R+P V++V GPQT +RLPELL ER
Sbjct: 63  LGQWREYK----AKNPHVVIGVGGCVASQEGADIIKRAPFVDLVFGPQTLHRLPELLNER 118

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
               K VVD  +   +KF+ L        R  G TAF++I EGC K+C+FCVVPYTRG E
Sbjct: 119 MEKKKPVVDISFPEIEKFDHLPA-----PRAEGPTAFVSIMEGCSKYCSFCVVPYTRGTE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           ISR    V+ E  +L   GV EI LLGQNVN +RG   +G+    + L++ L+ I+G+ R
Sbjct: 174 ISRPFDDVLAECYQLATQGVREINLLGQNVNDYRGTMENGDIADLALLIHYLAAIEGIDR 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP   SD LI A+ ++  L  +LHLPVQSGSDRIL  M R +TA E++  I ++
Sbjct: 234 IRFTTSHPLAFSDNLINAYAEVPELANHLHLPVQSGSDRILGLMKRGYTALEFKSKIRKL 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R +RPDI +S+D IVGFPGETD DF+ TMDLV +IG+  +FSF YSPR GTP +N+ +  
Sbjct: 294 RKIRPDIRLSTDIIVGFPGETDKDFQDTMDLVHEIGFDTSFSFIYSPRPGTPAANLPDDT 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLVGRSPWLQSVVLN 441
              VK +RL  LQ +L  Q   ++ + VG I ++L+  H K+   +L GR+   + V  +
Sbjct: 354 PLEVKKQRLQILQNRLLLQASRYSQSMVGTIQKILVTGHSKKNSQQLSGRTECNRVVNFD 413

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELVV 469
              H IG  +  +I+D   ++L G L+ 
Sbjct: 414 GPAHLIGQFVDTQISDALPNSLRGRLIA 441


>gi|221124262|ref|XP_002159653.1| PREDICTED: similar to CDK5 regulatory subunit associated protein 1
           [Hydra magnipapillata]
 gi|260220064|emb|CBA27228.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Curvibacter putative symbiont of Hydra magnipapillata]
          Length = 445

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 201/449 (44%), Positives = 286/449 (63%), Gaps = 15/449 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ F+K++GCQMN YDS +M D+   +QGYE  + ++ ADLI+ NTC +REKA EKV+S 
Sbjct: 3   KKVFIKTFGCQMNEYDSDKMADVLGAAQGYEPTDDVEQADLILFNTCSVREKAQEKVFSD 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE-R 142
           LGRI++LK   ++ G      V GCVA  EG EI++R+P V+VV GPQT +RLPE+L  R
Sbjct: 63  LGRIKHLKAKGVQIG------VGGCVASQEGAEIIKRAPYVDVVFGPQTLHRLPEMLNAR 116

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
               K  VD  +   +KF+ L        +  G +AF++I EGC K+C++CVVPYTRG E
Sbjct: 117 KALDKPQVDISFPEIEKFDHLPPA-----KVDGASAFVSIMEGCSKYCSYCVVPYTRGTE 171

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-GLDGEKCTFSDLLYSLSEIKGLV 261
           I+R    V+ E   L D GV E+ LLGQNVNAWR   G  GE   F+ LL  +S+I G+ 
Sbjct: 172 INRPFEDVLVEIAGLADQGVKEVNLLGQNVNAWRNAMGDSGEMADFATLLEYVSDIPGIE 231

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+RYTTSHP + +  LI A+  L  L+ +LHLPVQ GSD+IL +M R +TA EY+  I +
Sbjct: 232 RIRYTTSHPNEFTPSLIAAYEKLPKLVSHLHLPVQHGSDKILMAMKRGYTAMEYKSTIRK 291

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R++RPD++ISSDFIVGFPGETD+D    M L+  IG+  +FSF +SPR GTP +N+ + 
Sbjct: 292 LRAIRPDMSISSDFIVGFPGETDEDHAKMMKLIHDIGFDNSFSFIFSPRPGTPAANLHDD 351

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVL 440
               VK  RL  LQ  +     + ++  +G +  +L+E   K + G+L+GR+   + V  
Sbjct: 352 TPHEVKLARLQELQAAINANIATISNQRLGTVQRILVEGGSKRDNGELMGRTECNRVVNF 411

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELVV 469
                 +G ++ V IT+ +  TL GE++ 
Sbjct: 412 AGNPRLVGQLVDVTITETRSYTLRGEVLT 440


>gi|285018048|ref|YP_003375759.1| 2-methylthioadenine synthetase [Xanthomonas albilineans GPE PC73]
 gi|283473266|emb|CBA15771.1| putative 2-methylthioadenine synthetase protein [Xanthomonas
           albilineans]
          Length = 470

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 207/454 (45%), Positives = 296/454 (65%), Gaps = 20/454 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + ++K++GCQMN YDS +M D+  + +G E  ++ ++AD++++NTC IREKA EKV+S L
Sbjct: 24  KLYIKTHGCQMNEYDSAKMADVLAAAEGLELTDNPEEADVVLVNTCSIREKAQEKVFSQL 83

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR + LK      G  +++ V GCVA  EGE I++R+P V++V GPQT +RLPEL+ RAR
Sbjct: 84  GRWKALKAG----GKQVIIGVGGCVASQEGEAIVKRAPYVDLVFGPQTLHRLPELI-RAR 138

Query: 145 --FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
              G+  VD  +   +KF+RL        R  G +AF++I EGC K+C+FCVVPYTRG E
Sbjct: 139 RASGQSQVDISFPEVEKFDRLP-----EPRAEGPSAFVSIMEGCSKYCSFCVVPYTRGEE 193

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD---GEKCTFSDL---LYSLSE 256
           ISR    V+ E  +L   GV EI LLGQNVNA+RG   D   GE    +DL   + S+++
Sbjct: 194 ISRPFEDVLVEVAQLAAQGVREINLLGQNVNAYRGPYADADVGEDPQHADLGLLIRSIAQ 253

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           I+G+ R+R+TTSHP + SD L+ A+ D+  L  YLHLPVQ+GSDRIL +M R +TA E++
Sbjct: 254 IEGIGRIRFTTSHPLEFSDSLVDAYRDVPQLANYLHLPVQAGSDRILSAMKRGYTALEFK 313

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
           Q I ++R+VRPDIAISSDFIVGFPGETD DF  TM L++ +G+ Q+FSF YS R GTP +
Sbjct: 314 QKIRKLRAVRPDIAISSDFIVGFPGETDADFDKTMRLIEDVGFDQSFSFIYSRRPGTPAA 373

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWL 435
           ++ +   E VK  RL  LQ  +       + + +G +  VL+E   K+   +L G++  +
Sbjct: 374 DLEDDTPEAVKHARLTRLQAHINAHAQQISRSMIGSVQTVLVEGPSKKNPAELTGKTENM 433

Query: 436 QSVVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
           +SV        IG  ++V IT+   ++L G +V 
Sbjct: 434 RSVNFPGHPRLIGQFVEVTITEALSNSLRGRVVA 467


>gi|238758019|ref|ZP_04619200.1| hypothetical protein yaldo0001_8970 [Yersinia aldovae ATCC 35236]
 gi|238703773|gb|EEP96309.1| hypothetical protein yaldo0001_8970 [Yersinia aldovae ATCC 35236]
          Length = 482

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 200/450 (44%), Positives = 288/450 (64%), Gaps = 12/450 (2%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKV 80
           ++ ++  +K++GCQMN YDS +M D+  S  GY+     ++ADL++LNTC IREKA EKV
Sbjct: 8   LMTKKLHIKTWGCQMNEYDSSKMADLLASTHGYQLTAIPEEADLLLLNTCSIREKAQEKV 67

Query: 81  YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140
           +S LG  + LK    ++  +L++ V GCVA  EGE +  R+P V+V+ GPQT +RLPE++
Sbjct: 68  FSLLGHWKLLK----EKNPNLIIGVGGCVASQEGEHLRLRAPCVDVIFGPQTLHRLPEMI 123

Query: 141 ERAR-FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
              +     VVD  +   +KF+RL        R  G TAF++I EGC+K+CTFCVVPYTR
Sbjct: 124 NHVQGTHSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTFCVVPYTR 178

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G E+SR    ++ E  +L   GV E+ LLGQNVNA+RG   +G+ C+F++LL  ++ I G
Sbjct: 179 GEEVSRPCDDILFEIAQLAAQGVREVNLLGQNVNAYRGATYEGDTCSFAELLRLVAAIDG 238

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           + R+R+TTSHP + +D +I+ + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II
Sbjct: 239 IDRIRFTTSHPIEFTDDIIEVYRDTPELVSFLHLPVQSGSDRILTMMKRAHTALEYKAII 298

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            ++R  RPDI ISSDFI+GFPGET  DF  TM LV  IG+  ++SF YSPR GTP + + 
Sbjct: 299 RKLRQARPDIQISSDFIIGFPGETQQDFEQTMKLVADIGFDTSYSFIYSPRPGTPAAELP 358

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSV 438
           + V E  K +RL  LQ+++ +Q +  +   VG +  +L+E   ++   +L GR+   + V
Sbjct: 359 DDVSEEEKKQRLHILQQRITQQAMGISREMVGTVQRILVESTSRKNVMELAGRTENNRVV 418

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468
                   +G  + V I DV  S+L G L+
Sbjct: 419 NFAGSPELMGKFVDVEIVDVYASSLRGALL 448


>gi|122879210|ref|YP_201405.6| (dimethylallyl)adenosine tRNA methylthiotransferase [Xanthomonas
           oryzae pv. oryzae KACC10331]
 gi|229891224|sp|Q5GZ51|MIAB_XANOR RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
          Length = 484

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 207/463 (44%), Positives = 300/463 (64%), Gaps = 19/463 (4%)

Query: 14  VSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHI 72
           V++     +V  + ++K++GCQMN YDS +M D+   S+G E  ++ ++AD++++NTC I
Sbjct: 25  VARPSAPAVVRGKLYIKTHGCQMNEYDSAKMADVLAASEGLELTDNPEEADVVLVNTCSI 84

Query: 73  REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT 132
           REKA EKV+S LGR + LK      G  +++ V GCVA  EGE I++R+P V++V GPQT
Sbjct: 85  REKAQEKVFSQLGRWKALKAG----GKPVIIGVGGCVASQEGEAIVKRAPYVDLVFGPQT 140

Query: 133 YYRLPELLERAR--FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190
            +RLPEL+ RAR   GK  VD  +   +KF+RL        R  G +AF++I EGC K+C
Sbjct: 141 LHRLPELI-RARRESGKSQVDISFPEIEKFDRLP-----EPRAEGPSAFVSIMEGCSKYC 194

Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-GLD-GEKCTFS 248
           +FCVVPYTRG E+SR    V+ E  +L   GV EI LLGQNVNA+RG  G D G+   ++
Sbjct: 195 SFCVVPYTRGEEVSRPFEDVLVEVAQLAAQGVREINLLGQNVNAYRGAYGADAGDPAQYA 254

Query: 249 DL---LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
           DL   + ++++I+G+ R+R+TTSHP + SD L+ A+ D+  L  YLHLPVQ+GSDRIL +
Sbjct: 255 DLGLLIRTIAQIEGIGRIRFTTSHPLEFSDSLVDAYRDVPQLANYLHLPVQAGSDRILSA 314

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           M R +TA E++  I ++R+VRPDI+ISSDFIVGFPGET+ DF  TM L++ +G+ Q+FSF
Sbjct: 315 MKRGYTALEFKSRIRKLRAVRPDISISSDFIVGFPGETEADFEKTMKLIEDVGFDQSFSF 374

Query: 366 KYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KE 424
            YS R GTP S++ +   E VK  RL  LQ  +     S + + VG +  VL+E    ++
Sbjct: 375 VYSRRPGTPASDLQDDTPETVKQARLARLQAHISAHAASISQSMVGSVQRVLVEGPSRRD 434

Query: 425 KGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
             +L G+S  ++ V        IG  + V IT+   ++L G +
Sbjct: 435 PNELTGKSENMRPVNFPGNPRLIGQFVDVLITEAMSNSLRGRI 477


>gi|241764105|ref|ZP_04762142.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Acidovorax delafieldii
           2AN]
 gi|241366569|gb|EER61057.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Acidovorax delafieldii
           2AN]
          Length = 447

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 206/449 (45%), Positives = 292/449 (65%), Gaps = 15/449 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ F+K++GCQMN YDS +M D+   +QGYE   ++D+ADLI+ NTC +REKA EKV+S 
Sbjct: 3   KKVFIKTFGCQMNEYDSDKMVDVLGAAQGYEPTQNVDEADLILFNTCSVREKAQEKVFSD 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-ER 142
           LGRI++LK   +K G      V GCVA  EG EI++R+P V+VV GPQT +RLPE+L +R
Sbjct: 63  LGRIKHLKARGVKIG------VGGCVASQEGAEIIKRAPYVDVVFGPQTLHRLPEMLNQR 116

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            R  K  VD  +   +KF+ L        R  G +AF++I EGC K+C++CVVPYTRG E
Sbjct: 117 ERMDKPQVDISFPEIEKFDHLPPA-----RVEGASAFVSIMEGCSKYCSYCVVPYTRGEE 171

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-GLDGEKCTFSDLLYSLSEIKGLV 261
           +SR    V+ E   L D GV EITLLGQNVNA+ GK G   E   F+ LL  +S+I G+ 
Sbjct: 172 VSRPFDDVLVEVAGLADQGVKEITLLGQNVNAYLGKMGGTTEIADFALLLEYVSDIPGIE 231

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+RYTTSHP + +  LI+A+  L  L  +LHLPVQ GSDRIL +M R +TA EY+  + +
Sbjct: 232 RIRYTTSHPNEFTPRLIEAYVKLPKLASHLHLPVQHGSDRILMAMKRGYTAMEYKSTVRK 291

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R++RPD+A+SSDFIVGFPGE++DDF   M L+D I +  +FSF +SPR GTP + + + 
Sbjct: 292 LRAIRPDLAMSSDFIVGFPGESEDDFNKMMKLIDDIHFDNSFSFIFSPRPGTPAAGLHDD 351

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVL 440
              +VK  RL  LQ  +     S +++ VG +  +L+E   K +  +L+GR+   + V  
Sbjct: 352 TPHDVKLRRLQHLQSVINANIKSISESRVGTVQRILVEGASKRDSTELMGRTECNRVVNF 411

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELVV 469
             +   +G ++ V IT+ K  TL G+++ 
Sbjct: 412 VGQPRLVGQMVDVTITEAKAYTLRGKVLT 440


>gi|304413678|ref|ZP_07395122.1| 2-methylthioadenine synthetase [Candidatus Regiella insecticola
           LSR1]
 gi|304283769|gb|EFL92163.1| 2-methylthioadenine synthetase [Candidatus Regiella insecticola
           LSR1]
          Length = 475

 Score =  387 bits (993), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 203/445 (45%), Positives = 288/445 (64%), Gaps = 14/445 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS +M D+   + GY+     ++ADL++LNTC IREKA EKV+  
Sbjct: 3   KKLHIKTWGCQMNEYDSSKMADLLAKTHGYQLTEVPEEADLLLLNTCSIREKAQEKVFHL 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK+S      +LL+ V GCVA  EGE I +R+P V+++ GPQT +RLPE++ + 
Sbjct: 63  LGRWKLLKDS----NPNLLIGVGGCVASQEGENIRQRAPCVDIIFGPQTLHRLPEMINQV 118

Query: 144 RFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           + G R  VVD  +   +KF+ L        R  G +AF++I EGC+K+CTFCVVPYTRG 
Sbjct: 119 Q-GSRSAVVDISFPEIEKFDCLP-----EPRANGPSAFVSIMEGCNKYCTFCVVPYTRGE 172

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E+SR    ++ E  +L +  V E+ LLGQNVNA+RG   DG  C+F++LL  ++ I G+ 
Sbjct: 173 EVSRPCDDILFEIAQLAEQNVREVNLLGQNVNAYRGATYDGNICSFAELLRLVAAIDGID 232

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHP + +D +IK + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II +
Sbjct: 233 RVRFTTSHPIEFTDDIIKVYEDTPELVSFLHLPVQSGSDRILTMMKRAHTALEYKAIIRK 292

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R  RPDI ISSDFIVGFPGET DDF  TM L+ ++ +  ++SF YS R GTP +++ + 
Sbjct: 293 LRKARPDIQISSDFIVGFPGETQDDFEHTMKLIAEVNFDTSYSFIYSSRPGTPAADLPDN 352

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVL 440
           V E  K +RL  LQ+++ +Q + F+ A VG I  VL+E   ++   +L GR+   + V  
Sbjct: 353 VSEEEKKQRLHILQQRISQQAMHFSRAMVGTIQRVLVEGPSRKNLMELAGRTENNRVVNF 412

Query: 441 NSKNHNIGDIIKVRITDVKISTLYG 465
                 IG  + V I  V  S+L G
Sbjct: 413 EGSPDMIGKFVDVEIVSVYASSLRG 437


>gi|165976746|ref|YP_001652339.1| bifunctional enzyme involved in thiolation andmethylation of tRNA
           [Actinobacillus pleuropneumoniae serovar 3 str. JL03]
 gi|165876847|gb|ABY69895.1| bifunctional enzyme involved in thiolation andmethylation of tRNA
           [Actinobacillus pleuropneumoniae serovar 3 str. JL03]
          Length = 463

 Score =  387 bits (993), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 201/436 (46%), Positives = 288/436 (66%), Gaps = 12/436 (2%)

Query: 36  MNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSR 94
           MN YDS +M D+  S  G E  +  ++AD+++LNTC IREKA EKV+S LGR +N K   
Sbjct: 1   MNEYDSSKMADLLNSTHGLELTDKPEEADVLLLNTCSIREKAQEKVFSQLGRWKNWK--- 57

Query: 95  IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR-VVDTD 153
            K+  DL++ V GCVA  EGE I  R+P V++V GPQT +RLPE++ + R G R +VD  
Sbjct: 58  -KDKPDLIIGVGGCVASQEGEHIRDRAPFVDIVFGPQTLHRLPEMINKIRGGDRAIVDIS 116

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           +   +KF+RL        R  G TAF++I EGC+K+C+FCVVPYTRG E+SR +  V+ E
Sbjct: 117 FPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCSFCVVPYTRGEEVSRPVDDVLFE 171

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
             +L + GV E+ LLGQNVNA+RG+  DG  CTF++LL  ++ I G+ R+RYTTSHP + 
Sbjct: 172 IAQLAEQGVREVNLLGQNVNAYRGETFDGGICTFAELLRLVAAIDGIDRVRYTTSHPIEF 231

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
           +D +I+ + D   L+ +LHLP+QSG+DR+L  M R HTA EY+ II ++R VRP+I ISS
Sbjct: 232 TDDIIEVYRDTPELVSFLHLPIQSGADRVLTMMKRNHTALEYKAIIRKLREVRPNIQISS 291

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLC 393
           DFIVGFPGET +DF  TM +++++ +  +FSF YS R GTP +++ + + E  K  RL  
Sbjct: 292 DFIVGFPGETAEDFEQTMKVIEQVNFDMSFSFIYSARPGTPAADLPDDISEEEKKARLAR 351

Query: 394 LQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNSKNHNIGDIIK 452
           LQ+++  Q + F+ A +G    VL+E   K+   +L GR+   + V        IG  + 
Sbjct: 352 LQQRINHQAMQFSRAMLGTEQRVLVEGPSKKDIMELTGRTENNRIVNFQGTPDMIGKFVD 411

Query: 453 VRITDVKISTLYGELV 468
           ++ITDV  ++L GE+V
Sbjct: 412 IKITDVYTNSLRGEVV 427


>gi|56414201|ref|YP_151276.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella
           enterica subsp. enterica serovar Paratyphi A str. ATCC
           9150]
 gi|197363125|ref|YP_002142762.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella
           enterica subsp. enterica serovar Paratyphi A str.
           AKU_12601]
 gi|56128458|gb|AAV77964.1| MiaB protein (putative tRNA-thiotransferase (or
           tRNA-methylthiotransferase)) [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197094602|emb|CAR60123.1| MiaB protein (putative tRNA-thiotransferase (or
           tRNA-methylthiotransferase)) [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
          Length = 488

 Score =  387 bits (993), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 201/448 (44%), Positives = 293/448 (65%), Gaps = 14/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS +M D+   + GY+  +  ++AD+++LNTC IREKA EKV+  
Sbjct: 17  KKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTDVAEEADVLLLNTCSIREKAQEKVFHQ 76

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR R LK    ++  DL++ V GCVA  EGE I +R+  V+++ GPQT +RLPE++   
Sbjct: 77  LGRWRLLK----EKNPDLIIGVGGCVASQEGEHIRQRAHYVDIIFGPQTSHRLPEMINSV 132

Query: 144 RFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           R G R  VVD  +   +KF+RL        R  G TAF++I EGC+K+CT+CVVPYTRG 
Sbjct: 133 R-GDRSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTYCVVPYTRGE 186

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E+SR    ++ E  +L   GV E+ LLGQNVNAWRG+  DG   TF+DLL  ++ I G+ 
Sbjct: 187 EVSRPSDDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTTGTFADLLRLVAAIDGID 246

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHP + +D +I+ + D   L+ +LHLPVQSGSDR+L  M R HTA EY+ II +
Sbjct: 247 RIRFTTSHPIEFTDDIIEVYRDTPELVSFLHLPVQSGSDRVLNLMGRTHTALEYKAIIRK 306

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R+ RPDI ISSDFIVGFPGET DDF  TM L+  + +  ++SF +S R GTP ++M++ 
Sbjct: 307 LRAARPDIQISSDFIVGFPGETTDDFEKTMKLIADVNFDMSYSFIFSARPGTPAADMVDD 366

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVL 440
           V E  K +RL  LQ+++ +Q ++++   +G    +L+E   ++   +L GR+   + V  
Sbjct: 367 VPEEEKKQRLYILQERINQQAMAWSRRMLGTTQRILVEGTSRKNIMELSGRTENNRVVNF 426

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 IG  + V ITDV  ++L G++V
Sbjct: 427 EGTPEMIGKFVDVEITDVYPNSLRGKVV 454


>gi|291616694|ref|YP_003519436.1| YleA [Pantoea ananatis LMG 20103]
 gi|291151724|gb|ADD76308.1| YleA [Pantoea ananatis LMG 20103]
 gi|327393120|dbj|BAK10542.1| tRNA-I(6)A37-MiaB YleA [Pantoea ananatis AJ13355]
          Length = 478

 Score =  387 bits (993), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 200/447 (44%), Positives = 288/447 (64%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS +M D+  S  GY      ++AD+++LNTC IREKA EKV+  
Sbjct: 7   KKLHIKTWGCQMNEYDSSKMSDLLNSTHGYTLTEEAEEADILLLNTCSIREKAQEKVFHQ 66

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK    +   DL++ V GCVA  EG+ I +R+P V++V GPQT +RLPE++   
Sbjct: 67  LGRWKKLK----ERNPDLIIGVGGCVASQEGDHIRQRAPCVDIVFGPQTLHRLPEMINTV 122

Query: 144 RFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           R  K  VVD  +   +KF+RL        R  G TAF++I EGC+K+CTFCVVPYTRG E
Sbjct: 123 RGSKSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTFCVVPYTRGEE 177

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR    ++ E  +L   GV E+ LLGQNVNA+RG   DG+ CTF++LL  ++ I G+ R
Sbjct: 178 VSRPSDDILLEIAQLAAQGVREVNLLGQNVNAYRGATFDGDVCTFAELLRLVAAIDGIDR 237

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP + +D +I+ + D   L+ +LHLPVQSG+DRIL  M R HTA EY+ II ++
Sbjct: 238 IRFTTSHPIEFTDDIIEVYRDTPELVSFLHLPVQSGADRILTLMKRAHTALEYKAIIRKL 297

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+ RPDI ISSDFI+GFPGET  DF  TM L+  I +  ++SF YS R GTP +++ + V
Sbjct: 298 RAARPDIEISSDFIIGFPGETQQDFEQTMKLIGDINFDMSYSFIYSARPGTPAADLPDDV 357

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441
            E+ K +RL  LQ+++ +Q ++ +   +G +  +L+E   ++   +L GR+   + V   
Sbjct: 358 SEDEKKQRLYILQERINQQAMAISRRMMGSVQRILVEGISRKNVMELTGRTENNRVVNFE 417

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                IG    V I DV  ++L G+LV
Sbjct: 418 GPVEMIGKFADVEIVDVYTNSLRGKLV 444


>gi|226330999|ref|ZP_03806517.1| hypothetical protein PROPEN_04929 [Proteus penneri ATCC 35198]
 gi|225201794|gb|EEG84148.1| hypothetical protein PROPEN_04929 [Proteus penneri ATCC 35198]
          Length = 476

 Score =  387 bits (993), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 196/447 (43%), Positives = 293/447 (65%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ ++K++GCQMN YDS +M D+  S  GY+  +  +DAD+++LNTC IREKA EKV+  
Sbjct: 5   KKLYIKTWGCQMNEYDSSKMADLLESTHGYQLTDVAEDADILLLNTCSIREKAQEKVFHQ 64

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR +  K+++     D+++ V GCVA  EGE I +R+  V+++ GPQT +RLPE++ + 
Sbjct: 65  LGRWKYFKDNK----PDIIIGVGGCVASQEGEYIRQRAQCVDIIFGPQTLHRLPEMINQV 120

Query: 144 RFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           +  K  VVD  +   +KF+RL        R  G +AF++I EGC+K+C+FCVVPYTRG E
Sbjct: 121 KGTKSPVVDISFPEIEKFDRLP-----EPRAEGPSAFVSIMEGCNKYCSFCVVPYTRGEE 175

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR    V+ E  +L   GV E+ LLGQNVNA+RG   DG+ C+F++L+  ++ I G+ R
Sbjct: 176 VSRPCDDVLFEIAQLAAQGVREVNLLGQNVNAYRGATFDGQICSFAELIRLVAAIDGIDR 235

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP + +D ++  + D   L+ YLHLPVQSGSDRIL  M R HTA EY+ II ++
Sbjct: 236 IRFTTSHPIEFTDDIVAVYEDTPELVSYLHLPVQSGSDRILTLMKRNHTALEYKSIIRKL 295

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R  RPDI ISSDFI+GFPGET DDF  TM L+  + +  +FSF YS R GTP +++ + V
Sbjct: 296 RKARPDILISSDFIIGFPGETQDDFEKTMQLIADVNFDMSFSFIYSARPGTPAADLPDDV 355

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441
            E+ K +RL  LQ+++ +Q ++F+ A +  +  +L+E   ++   +L GR+   + V   
Sbjct: 356 SEDEKKQRLYLLQQRINQQAMNFSRAMLNSVQRILVEGPSRKNVMELSGRTENNRVVNFE 415

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                IG  + V I DV  ++L G++V
Sbjct: 416 GTPDMIGKFVDVEIVDVYANSLRGKVV 442


>gi|326315625|ref|YP_004233297.1| RNA modification enzyme, MiaB family [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323372461|gb|ADX44730.1| RNA modification enzyme, MiaB family [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 449

 Score =  387 bits (993), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 205/449 (45%), Positives = 289/449 (64%), Gaps = 15/449 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ FVK++GCQMN YDS +M D+  + QGYE   + ++ADLI+ NTC +REKA EKV+S 
Sbjct: 3   KKVFVKTFGCQMNEYDSDKMVDVLHAAQGYEPTQNAEEADLILFNTCSVREKAQEKVFSD 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-ER 142
           LGR ++LK   +K G      V GCVA  EG+EI++R+P V+VV GPQT +RLPELL +R
Sbjct: 63  LGRFKHLKARGVKIG------VGGCVASQEGDEIIKRAPYVDVVFGPQTLHRLPELLAQR 116

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
               +  VD  +   +KF+ L        R  G +AF++I EGC K+C++CVVPYTRG E
Sbjct: 117 EALARPQVDISFPEIEKFDHLPPA-----RVEGASAFVSIMEGCSKYCSYCVVPYTRGEE 171

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-GLDGEKCTFSDLLYSLSEIKGLV 261
           +SR    V+ E   L D GV E+TLLGQNVNA+ GK G   E   F+ LL  +++I G+ 
Sbjct: 172 VSRPFDDVLVEVAGLADQGVKEVTLLGQNVNAYLGKMGGTAEVADFALLLEYVADIPGIE 231

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHP + +  LI A+  +  L+ +LHLPVQ GSDRIL +M R +TA EY+  I +
Sbjct: 232 RIRFTTSHPNEFTPRLIDAYARIPKLVSHLHLPVQHGSDRILMAMKRGYTAMEYKSTIRK 291

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R++RPD+A+SSDFIVGFPGET+DDF   M L+D I +  +FSF +SPR GTP +++ + 
Sbjct: 292 LRAIRPDLAMSSDFIVGFPGETEDDFGKMMKLIDDIHFDNSFSFIFSPRPGTPAASLHDD 351

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLVGRSPWLQSVVL 440
               VK  RL  LQ  +     S +++ VG +  +L+E   K  G +L+GR+   + V  
Sbjct: 352 TPHEVKLRRLQELQAVINANIKSISESRVGTVQRILVEGASKRDGSELMGRTECNRVVNF 411

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELVV 469
                 +G ++ V IT+ K  TL GE+V 
Sbjct: 412 AGHPRLVGQMVDVTITEAKAYTLRGEVVT 440


>gi|215485694|ref|YP_002328125.1| isopentenyl-adenosine A37 tRNA methylthiolase [Escherichia coli
           O127:H6 str. E2348/69]
 gi|312965102|ref|ZP_07779339.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli 2362-75]
 gi|331656683|ref|ZP_08357645.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli TA206]
 gi|215263766|emb|CAS08102.1| isopentenyl-adenosine A37 tRNA methylthiolase [Escherichia coli
           O127:H6 str. E2348/69]
 gi|281177809|dbj|BAI54139.1| conserved hypothetical protein [Escherichia coli SE15]
 gi|312290193|gb|EFR18076.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli 2362-75]
 gi|315299188|gb|EFU58442.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli MS 16-3]
 gi|331054931|gb|EGI26940.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli TA206]
          Length = 474

 Score =  387 bits (993), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 201/448 (44%), Positives = 293/448 (65%), Gaps = 14/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS +M D+   + GY+  +  ++AD+++LNTC IREKA EKV+  
Sbjct: 3   KKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTDVAEEADVLLLNTCSIREKAQEKVFHQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK    ++  DL++ V GCVA  EGE I +R+  V+++ GPQT +RLPE++   
Sbjct: 63  LGRWKLLK----EKNPDLIIGVGGCVASQEGEHIRQRAHYVDIIFGPQTLHRLPEMINSV 118

Query: 144 RFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           R G R  VVD  +   +KF+RL        R  G TAF++I EGC+K+CT+CVVPYTRG 
Sbjct: 119 R-GDRSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTYCVVPYTRGE 172

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E+SR    ++ E  +L   GV E+ LLGQNVNAWRG+  DG   TF+DLL  ++ I G+ 
Sbjct: 173 EVSRPSDDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTTGTFADLLRLVAAIDGID 232

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHP + +D +I+ + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II +
Sbjct: 233 RIRFTTSHPIEFTDDIIEVYRDTPELVSFLHLPVQSGSDRILNLMGRTHTALEYKAIIRK 292

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R+ RPDI ISSDFIVGFPGET DDF  TM L+  + +  ++SF +S R GTP ++M++ 
Sbjct: 293 LRAARPDIQISSDFIVGFPGETTDDFEKTMKLIADVNFDMSYSFIFSARPGTPAADMVDD 352

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVL 440
           V E  K +RL  LQ+++ +Q ++++   +G    +L+E   ++   +L GR+   + V  
Sbjct: 353 VPEEEKKQRLYILQERINQQAMAWSRRMLGTTQRILVEGTSRKSIMELSGRTENNRVVNF 412

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 IG  + V ITDV  ++L G++V
Sbjct: 413 EGTPDMIGKFVDVEITDVYPNSLRGKVV 440


>gi|170025226|ref|YP_001721731.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Yersinia
           pseudotuberculosis YPIII]
 gi|169751760|gb|ACA69278.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Yersinia
           pseudotuberculosis YPIII]
          Length = 509

 Score =  386 bits (992), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 202/447 (45%), Positives = 287/447 (64%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS +M D+  S  GY+     ++ADL++LNTC IREKA EKV+S 
Sbjct: 38  KKLHIKTWGCQMNEYDSSKMADLLASTHGYQLTTIPEEADLLLLNTCSIREKAQEKVFSL 97

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LG+ + LK    ++   L++ V GCVA  EGE++ +R+P V+V+ GPQT +RLPE++   
Sbjct: 98  LGQWKLLK----EKNPQLIIGVGGCVASQEGEQLRQRAPCVDVIFGPQTLHRLPEMINHV 153

Query: 144 R-FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           +     VVD  +   +KF+RL        R  G TAF++I EGC+K+CTFCVVPYTRG E
Sbjct: 154 QETNSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTFCVVPYTRGEE 208

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR    ++ E  +L   GV E+ LLGQNVNA+RG   DG+ C+F++LL  ++ I G+ R
Sbjct: 209 VSRPSDDILFEIAQLAAQGVREVNLLGQNVNAYRGATYDGDICSFAELLRLVAAIDGIDR 268

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP + +D +I  + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II ++
Sbjct: 269 IRFTTSHPIEFTDDIIDVYRDTPELVSFLHLPVQSGSDRILTMMKRAHTALEYKAIIRKL 328

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R  RPDI ISSDFIVGFPGET  DF  TM LV  I +  ++SF YSPR GTP +++ + V
Sbjct: 329 RQARPDIQISSDFIVGFPGETQQDFEQTMKLVADIHFDTSYSFIYSPRPGTPAADLPDNV 388

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441
            E  K +RL  LQ+++ +Q +  +   VG +  VL+E   ++   +L GR+   + V   
Sbjct: 389 SEEEKKQRLHILQQRISQQAMEISRKMVGTVQRVLVEGTSRKNVMELAGRTENNRVVNFE 448

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                IG  + V I +V  S+L G L+
Sbjct: 449 GSPDMIGKFVDVEIVNVYASSLRGILL 475


>gi|212712962|ref|ZP_03321090.1| hypothetical protein PROVALCAL_04060 [Providencia alcalifaciens DSM
           30120]
 gi|212684440|gb|EEB43968.1| hypothetical protein PROVALCAL_04060 [Providencia alcalifaciens DSM
           30120]
          Length = 476

 Score =  386 bits (992), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 199/448 (44%), Positives = 295/448 (65%), Gaps = 14/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ ++K++GCQMN YDS +M  +  S  GY+  +  ++ADL++LNTC IREKA EKV+  
Sbjct: 5   KKLYMKTWGCQMNEYDSSKMVSLLESTHGYQLTDIAEEADLLLLNTCSIREKAQEKVFHQ 64

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR +  K+ +     D+++ V GCVA  EG+ I +R+P V++V GPQT +RLPE++ + 
Sbjct: 65  LGRWKFFKDKK----PDIIIGVGGCVASQEGDFIRQRAPCVDIVFGPQTLHRLPEMINQI 120

Query: 144 RFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           + G R  ++D  +   +KF+RL        R  G TAF++I EGC+K+CTFCVVPYTRG 
Sbjct: 121 Q-GNRSPIIDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTFCVVPYTRGE 174

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E+SR    ++ E  +L   GV E+ LLGQNVNA+RG+  DGE C+F++LL  ++ I G+ 
Sbjct: 175 EVSRPCDDILFEIAQLAAQGVREVNLLGQNVNAYRGETFDGEICSFAELLRLVASIDGID 234

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHP + +D +I+ + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II +
Sbjct: 235 RVRFTTSHPIEFTDDIIEVYRDTPELVSFLHLPVQSGSDRILTMMKRAHTALEYKAIIRK 294

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R  RP I ISSDFIVGFPGET DDF  TM L+  + +  ++SF YS R GTP +++ + 
Sbjct: 295 LREARPGILISSDFIVGFPGETTDDFEKTMKLIADVNFDMSYSFVYSARPGTPAADLPDD 354

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVL 440
           V E+ K ERL  LQ+++ +Q +SF+ A +G +  +L+E   ++   +L GR+   + V  
Sbjct: 355 VSEDEKKERLYLLQQRINQQAMSFSRAMLGTVQRILVEGTSRKNVMELSGRTENNRVVNF 414

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 IG  + V I DV  ++L G+++
Sbjct: 415 EGTPDMIGKFVDVEIVDVYTNSLRGKVI 442


>gi|238795390|ref|ZP_04638905.1| hypothetical protein ymoll0001_9790 [Yersinia mollaretii ATCC
           43969]
 gi|238720509|gb|EEQ12310.1| hypothetical protein ymoll0001_9790 [Yersinia mollaretii ATCC
           43969]
          Length = 486

 Score =  386 bits (992), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 199/447 (44%), Positives = 287/447 (64%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS +M D+  S  GY+   + +DADL++LNTC IREKA EKV+S 
Sbjct: 15  KKLHIKTWGCQMNEYDSSKMADLLASTHGYQLTETPEDADLLLLNTCSIREKAQEKVFSL 74

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LG  ++LK    ++  +L++ V GCVA  EGE + +R+P V+++ GPQT +RLPE++   
Sbjct: 75  LGHWKSLK----EKNPELIIGVGGCVASQEGEHLRQRAPCVDIIFGPQTLHRLPEMINHV 130

Query: 144 RFG-KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           +     VVD  +   +KF+RL        R  G TAF++I EGC+K+CTFCVVPYTRG E
Sbjct: 131 QGSHSSVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTFCVVPYTRGEE 185

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR    ++ E  +L   GV E+ LLGQNVNA+RG   DG+ C+F++LL  ++ I G+ R
Sbjct: 186 VSRPSDDILFEIAQLAAQGVREVNLLGQNVNAYRGPTYDGDICSFAELLRLVAAIDGIDR 245

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LR+TTSHP + +D +I  + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II ++
Sbjct: 246 LRFTTSHPIEFTDDIIDVYRDTPELVSFLHLPVQSGSDRILTMMKRAHTALEYKAIIRKL 305

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R  RPDI ISSDFI+GFPGET  DF  T+ LV  I +  ++SF YS R GTP +++ + V
Sbjct: 306 RQARPDIQISSDFIIGFPGETQHDFEQTLKLVADIHFDTSYSFIYSSRPGTPAADLPDDV 365

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLVGRSPWLQSVVLN 441
            E  K +RL  LQ+++ +Q +  +   +G +  +L+E   ++   +L GR+   + V   
Sbjct: 366 SEEEKKQRLHILQQRITQQAMEISRKMIGSVQRILVEGPSRKNAMELAGRTENNRVVNFE 425

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                IG  + V I DV  S+L G L+
Sbjct: 426 GVPSMIGQFVDVEIIDVYASSLRGILL 452


>gi|186894491|ref|YP_001871603.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Yersinia
           pseudotuberculosis PB1/+]
 gi|186697517|gb|ACC88146.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Yersinia
           pseudotuberculosis PB1/+]
          Length = 509

 Score =  386 bits (992), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 202/447 (45%), Positives = 287/447 (64%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS +M D+  S  GY+     ++ADL++LNTC IREKA EKV+S 
Sbjct: 38  KKLHIKTWGCQMNEYDSSKMADLLASTHGYQLTTIPEEADLLLLNTCSIREKAQEKVFSL 97

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LG+ + LK    ++   L++ V GCVA  EGE++ +R+P V+V+ GPQT +RLPE++   
Sbjct: 98  LGQWKLLK----EKNPQLIIGVGGCVASQEGEQLRQRAPCVDVIFGPQTLHRLPEMINHV 153

Query: 144 R-FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           +     VVD  +   +KF+RL        R  G TAF++I EGC+K+CTFCVVPYTRG E
Sbjct: 154 QGTNSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTFCVVPYTRGEE 208

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR    ++ E  +L   GV E+ LLGQNVNA+RG   DG+ C+F++LL  ++ I G+ R
Sbjct: 209 VSRPSDDILFEIAQLAAQGVREVNLLGQNVNAYRGATYDGDICSFAELLRLVAAIDGIDR 268

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP + +D +I  + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II ++
Sbjct: 269 IRFTTSHPIEFTDDIIDVYRDTPELVSFLHLPVQSGSDRILTMMKRAHTALEYKAIIRKL 328

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R  RPDI ISSDFIVGFPGET  DF  TM LV  I +  ++SF YSPR GTP +++ + V
Sbjct: 329 RQARPDIQISSDFIVGFPGETQQDFEQTMKLVADIHFDTSYSFIYSPRPGTPAADLPDNV 388

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441
            E  K +RL  LQ+++ +Q +  +   VG +  VL+E   ++   +L GR+   + V   
Sbjct: 389 SEEEKKQRLHILQQRISQQAMEISRKMVGTVQRVLVEGTSRKNVMELAGRTENNRVVNFE 448

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                IG  + V I +V  S+L G L+
Sbjct: 449 GSPDMIGKFVDVEIVNVYASSLRGILL 475


>gi|145599895|ref|YP_001163971.1| tRNA-thiotransferase [Yersinia pestis Pestoides F]
 gi|145211591|gb|ABP40998.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Yersinia pestis Pestoides
           F]
          Length = 479

 Score =  386 bits (992), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 202/447 (45%), Positives = 287/447 (64%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS +M D+  S  GY+     ++ADL++LNTC IREKA EKV+S 
Sbjct: 8   KKLHIKTWGCQMNEYDSSKMADLLASTHGYQLTTIPEEADLLLLNTCSIREKAQEKVFSL 67

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LG+ + LK    ++   L++ V GCVA  EGE++ +R+P V+V+ GPQT +RLPE++   
Sbjct: 68  LGQWKLLK----EKNPQLIIGVGGCVASQEGEQLRQRAPCVDVIFGPQTLHRLPEMINHV 123

Query: 144 R-FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           +     VVD  +   +KF+RL        R  G TAF++I EGC+K+CTFCVVPYTRG E
Sbjct: 124 QGTNSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTFCVVPYTRGEE 178

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR    ++ E  +L   GV E+ LLGQNVNA+RG   DG+ C+F++LL  ++ I G+ R
Sbjct: 179 VSRPSDDILFEIAQLAAQGVREVNLLGQNVNAYRGATYDGDICSFAELLRLVAAIDGIDR 238

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP + +D +I  + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II ++
Sbjct: 239 VRFTTSHPIEFTDDIIDVYRDTPELVSFLHLPVQSGSDRILTMMKRAHTALEYKAIIRKL 298

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R  RPDI ISSDFIVGFPGET  DF  TM LV  I +  ++SF YSPR GTP +++ + V
Sbjct: 299 RQARPDIQISSDFIVGFPGETQQDFEQTMKLVADIHFDTSYSFIYSPRPGTPAADLPDNV 358

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441
            E  K +RL  LQ+++ +Q +  +   VG +  VL+E   ++   +L GR+   + V   
Sbjct: 359 SEEEKKQRLHILQQRISQQAMEISRKMVGTVQRVLVEGTSRKNVMELAGRTENNRVVNFE 418

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                IG  + V I +V  S+L G L+
Sbjct: 419 GSPDMIGKFVDVEIVNVYASSLRGILL 445


>gi|294625996|ref|ZP_06704606.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|294664199|ref|ZP_06729579.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292599666|gb|EFF43793.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292606024|gb|EFF49295.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 484

 Score =  386 bits (992), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 207/463 (44%), Positives = 300/463 (64%), Gaps = 19/463 (4%)

Query: 14  VSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHI 72
           V++     +V  + ++K++GCQMN YDS +M D+   S+G E  ++ ++AD++++NTC I
Sbjct: 25  VARPSAPAVVRGKLYIKTHGCQMNEYDSAKMADVLAASEGLELTDNPEEADVVLVNTCSI 84

Query: 73  REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT 132
           REKA EKV+S LGR + LK      G  +++ V GCVA  EGE I++R+P V++V GPQT
Sbjct: 85  REKAQEKVFSQLGRWKALKAG----GKPVIIGVGGCVASQEGEAIVKRAPYVDLVFGPQT 140

Query: 133 YYRLPELLERAR--FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190
            +RLPEL+ RAR   GK  VD  +   +KF+RL        R  G +AF++I EGC K+C
Sbjct: 141 LHRLPELI-RARRESGKSQVDISFPEIEKFDRLP-----EPRAEGPSAFVSIMEGCSKYC 194

Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-GLD-GEKCTFS 248
           +FCVVPYTRG E+SR    V+ E  +L   GV EI LLGQNVNA+RG  G D G+   ++
Sbjct: 195 SFCVVPYTRGEEVSRPFEDVLVEVAQLAAQGVREINLLGQNVNAYRGAYGADAGDTAQYA 254

Query: 249 DL---LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
           DL   + ++++I+G+ R+R+TTSHP + SD L+ A+ D+  L  YLHLPVQ+GSDRIL +
Sbjct: 255 DLGLLIRTIAQIEGIGRIRFTTSHPLEFSDSLVDAYRDVPQLANYLHLPVQAGSDRILSA 314

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           M R +TA E++  I ++R+VRPDI+ISSDFIVGFPGET+ DF  TM L++ +G+ Q+FSF
Sbjct: 315 MKRGYTALEFKSKIRKLRAVRPDISISSDFIVGFPGETEADFEKTMKLIEDVGFDQSFSF 374

Query: 366 KYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KE 424
            YS R GTP S++ +   E VK  RL  LQ  +     S + + VG +  VL+E    ++
Sbjct: 375 VYSRRPGTPASDLQDDTPEAVKQGRLARLQAHINAHAASISQSMVGSVQRVLVEGPSRRD 434

Query: 425 KGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
             +L G+S  ++ V        IG  + V IT+   ++L G +
Sbjct: 435 PNELTGKSENMRPVNFPGNPRLIGQFVDVLITEAMSNSLRGRI 477


>gi|253990619|ref|YP_003041975.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Photorhabdus
           asymbiotica subsp. asymbiotica ATCC 43949]
 gi|253782069|emb|CAQ85233.1| trna-methylthiotransferase miab protein [Photorhabdus asymbiotica]
          Length = 476

 Score =  386 bits (992), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 196/448 (43%), Positives = 296/448 (66%), Gaps = 14/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ ++K++GCQMN YDS +M D+  S  GY+  +  ++AD+++LNTC IREKA EKV+  
Sbjct: 5   KKLYIKTWGCQMNEYDSSKMADLLESTHGYQLTDVAEEADILLLNTCSIREKAQEKVFHQ 64

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR +NLK++      D+++ V GCVA  EG+ I +R+  V+++ GPQT +RLPE++ + 
Sbjct: 65  LGRWKNLKDT----NPDIIIGVGGCVASQEGDFIRKRAQCVDIIFGPQTLHRLPEMINQV 120

Query: 144 RFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           + G R  VVD  +   +KF+RL        R  G +AF++I EGC+K+CTFCVVPYTRG 
Sbjct: 121 K-GTRSPVVDISFPEIEKFDRLP-----EPRAEGPSAFVSIMEGCNKYCTFCVVPYTRGE 174

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E+SR    ++ E  +L   GV E+ LLGQNVNA+RG   DG+ C+F++LL  ++ I G+ 
Sbjct: 175 EVSRPCDDILFEIAQLAAQGVREVNLLGQNVNAYRGATYDGDICSFAELLRLVAAIDGID 234

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHP + +D +I  + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II +
Sbjct: 235 RIRFTTSHPIEFTDDIIAVYEDTPELVSFLHLPVQSGSDRILTLMKRAHTALEYKSIIRK 294

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R  RPDI ISSDFI+GFPGET DDF  TM L+  + +  ++SF YS R GTP +++ + 
Sbjct: 295 LRKARPDILISSDFIIGFPGETQDDFEKTMKLIADVNFDMSYSFIYSARPGTPAADLPDD 354

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVL 440
           V E  K +RL  LQ+++ +Q ++++ A +G +  +L+E   ++   +L GR+   + V  
Sbjct: 355 VSEEEKKQRLYLLQQRINQQAMNYSRAMLGSVQRILVEGTSRKNVMELSGRTENNRVVNF 414

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
             +   IG  + V I DV  ++L G+++
Sbjct: 415 EGQPDMIGKFVDVEIVDVYANSLRGKVI 442


>gi|229891216|sp|B1JG95|MIAB_YERPY RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
          Length = 474

 Score =  386 bits (991), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 202/447 (45%), Positives = 287/447 (64%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS +M D+  S  GY+     ++ADL++LNTC IREKA EKV+S 
Sbjct: 3   KKLHIKTWGCQMNEYDSSKMADLLASTHGYQLTTIPEEADLLLLNTCSIREKAQEKVFSL 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LG+ + LK    ++   L++ V GCVA  EGE++ +R+P V+V+ GPQT +RLPE++   
Sbjct: 63  LGQWKLLK----EKNPQLIIGVGGCVASQEGEQLRQRAPCVDVIFGPQTLHRLPEMINHV 118

Query: 144 R-FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           +     VVD  +   +KF+RL        R  G TAF++I EGC+K+CTFCVVPYTRG E
Sbjct: 119 QETNSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTFCVVPYTRGEE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR    ++ E  +L   GV E+ LLGQNVNA+RG   DG+ C+F++LL  ++ I G+ R
Sbjct: 174 VSRPSDDILFEIAQLAAQGVREVNLLGQNVNAYRGATYDGDICSFAELLRLVAAIDGIDR 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP + +D +I  + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II ++
Sbjct: 234 IRFTTSHPIEFTDDIIDVYRDTPELVSFLHLPVQSGSDRILTMMKRAHTALEYKAIIRKL 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R  RPDI ISSDFIVGFPGET  DF  TM LV  I +  ++SF YSPR GTP +++ + V
Sbjct: 294 RQARPDIQISSDFIVGFPGETQQDFEQTMKLVADIHFDTSYSFIYSPRPGTPAADLPDNV 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441
            E  K +RL  LQ+++ +Q +  +   VG +  VL+E   ++   +L GR+   + V   
Sbjct: 354 SEEEKKQRLHILQQRISQQAMEISRKMVGTVQRVLVEGTSRKNVMELAGRTENNRVVNFE 413

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                IG  + V I +V  S+L G L+
Sbjct: 414 GSPDMIGKFVDVEIVNVYASSLRGILL 440


>gi|51595460|ref|YP_069651.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Yersinia
           pseudotuberculosis IP 32953]
 gi|153950190|ref|YP_001401877.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Yersinia
           pseudotuberculosis IP 31758]
 gi|81640093|sp|Q66DD3|MIAB_YERPS RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|229891036|sp|A7FKU9|MIAB_YERP3 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|229891221|sp|B2K896|MIAB_YERPB RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|51588742|emb|CAH20353.1| putative tRNA-thiotransferase [Yersinia pseudotuberculosis IP
           32953]
 gi|152961685|gb|ABS49146.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Yersinia
           pseudotuberculosis IP 31758]
          Length = 474

 Score =  386 bits (991), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 202/447 (45%), Positives = 287/447 (64%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS +M D+  S  GY+     ++ADL++LNTC IREKA EKV+S 
Sbjct: 3   KKLHIKTWGCQMNEYDSSKMADLLASTHGYQLTTIPEEADLLLLNTCSIREKAQEKVFSL 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LG+ + LK    ++   L++ V GCVA  EGE++ +R+P V+V+ GPQT +RLPE++   
Sbjct: 63  LGQWKLLK----EKNPQLIIGVGGCVASQEGEQLRQRAPCVDVIFGPQTLHRLPEMINHV 118

Query: 144 R-FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           +     VVD  +   +KF+RL        R  G TAF++I EGC+K+CTFCVVPYTRG E
Sbjct: 119 QGTNSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTFCVVPYTRGEE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR    ++ E  +L   GV E+ LLGQNVNA+RG   DG+ C+F++LL  ++ I G+ R
Sbjct: 174 VSRPSDDILFEIAQLAAQGVREVNLLGQNVNAYRGATYDGDICSFAELLRLVAAIDGIDR 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP + +D +I  + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II ++
Sbjct: 234 IRFTTSHPIEFTDDIIDVYRDTPELVSFLHLPVQSGSDRILTMMKRAHTALEYKAIIRKL 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R  RPDI ISSDFIVGFPGET  DF  TM LV  I +  ++SF YSPR GTP +++ + V
Sbjct: 294 RQARPDIQISSDFIVGFPGETQQDFEQTMKLVADIHFDTSYSFIYSPRPGTPAADLPDNV 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441
            E  K +RL  LQ+++ +Q +  +   VG +  VL+E   ++   +L GR+   + V   
Sbjct: 354 SEEEKKQRLHILQQRISQQAMEISRKMVGTVQRVLVEGTSRKNVMELAGRTENNRVVNFE 413

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                IG  + V I +V  S+L G L+
Sbjct: 414 GSPDMIGKFVDVEIVNVYASSLRGILL 440


>gi|162421780|ref|YP_001606317.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Yersinia pestis Angola]
 gi|162354595|gb|ABX88543.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Yersinia pestis Angola]
          Length = 482

 Score =  386 bits (991), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 202/447 (45%), Positives = 287/447 (64%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS +M D+  S  GY+     ++ADL++LNTC IREKA EKV+S 
Sbjct: 11  KKLHIKTWGCQMNEYDSSKMADLLASTHGYQLTTIPEEADLLLLNTCSIREKAQEKVFSL 70

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LG+ + LK    ++   L++ V GCVA  EGE++ +R+P V+V+ GPQT +RLPE++   
Sbjct: 71  LGQWKLLK----EKNPQLIIGVGGCVASQEGEQLRQRAPCVDVIFGPQTLHRLPEMINHV 126

Query: 144 R-FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           +     VVD  +   +KF+RL        R  G TAF++I EGC+K+CTFCVVPYTRG E
Sbjct: 127 QGTNSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTFCVVPYTRGEE 181

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR    ++ E  +L   GV E+ LLGQNVNA+RG   DG+ C+F++LL  ++ I G+ R
Sbjct: 182 VSRPSDDILFEIAQLAAQGVREVNLLGQNVNAYRGATYDGDICSFAELLRLVAAIDGIDR 241

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP + +D +I  + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II ++
Sbjct: 242 VRFTTSHPIEFTDDIIDVYRDTPELVSFLHLPVQSGSDRILTMMKRAHTALEYKAIIRKL 301

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R  RPDI ISSDFIVGFPGET  DF  TM LV  I +  ++SF YSPR GTP +++ + V
Sbjct: 302 RQARPDIQISSDFIVGFPGETQQDFEQTMKLVADIHFDTSYSFIYSPRPGTPAADLPDNV 361

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441
            E  K +RL  LQ+++ +Q +  +   VG +  VL+E   ++   +L GR+   + V   
Sbjct: 362 SEEEKKQRLHILQQRISQQAMEISRKMVGTVQRVLVEGTSRKNVMELAGRTENNRVVNFE 421

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                IG  + V I +V  S+L G L+
Sbjct: 422 GSPDMIGKFVDVEIVNVYASSLRGILL 448


>gi|160896962|ref|YP_001562544.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Delftia
           acidovorans SPH-1]
 gi|229890511|sp|A9BUQ1|MIAB_DELAS RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|160362546|gb|ABX34159.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Delftia acidovorans
           SPH-1]
          Length = 442

 Score =  386 bits (991), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 208/449 (46%), Positives = 289/449 (64%), Gaps = 15/449 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ F+K++GCQMN YDS +M D+   +QGYE  +  + ADLI+ NTC +REKA EKV+S 
Sbjct: 3   KKVFIKTFGCQMNEYDSDKMADVLGAAQGYESTDDPEQADLILFNTCSVREKAQEKVFSD 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE-R 142
           LGR ++LK   +      L+ V GCVA  EGEEI++R+P V+VV GPQT +RLPELL  R
Sbjct: 63  LGRYKHLKERGV------LIGVGGCVASQEGEEIIKRAPYVDVVFGPQTLHRLPELLNAR 116

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           A   K  VD  +   +KF+ L        R  G +AF++I EGC K+C++CVVPYTRG E
Sbjct: 117 AAKHKPQVDISFPEIEKFDHLPPA-----RVEGSSAFVSIMEGCSKYCSYCVVPYTRGEE 171

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-GLDGEKCTFSDLLYSLSEIKGLV 261
           +SR    V+ E   L D GV E+TLLGQNVNA+ GK G   E   F+ LL  +SEI G+ 
Sbjct: 172 VSRPFEDVLIEVAGLADQGVKEVTLLGQNVNAYLGKMGDTAEIADFALLLEYVSEIPGIE 231

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+RYTTSHP + +  LI+A+  L  L+ +LHLPVQ GSD+IL +M R +TA EY+  I +
Sbjct: 232 RIRYTTSHPNEFTPRLIEAYARLPKLVSHLHLPVQHGSDKILMAMKRGYTAMEYKSTIRK 291

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R++RP++A+SSDFIVGFPGET++DF+  M L+  + +  +FSF +SPR GTP +N+ + 
Sbjct: 292 LRAIRPEMAMSSDFIVGFPGETEEDFQKMMKLIHDVRFDNSFSFIFSPRPGTPAANLHDD 351

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLVGRSPWLQSVVL 440
               VK  RL  LQ  +       +D  VG +  +L+E   K  G +L+GR+   + V  
Sbjct: 352 TPHEVKLRRLQELQAVINNNIKDISDERVGTVQRLLVEGLSKRDGSELMGRTECNRVVNF 411

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELVV 469
                 IG +I V+IT+ +  TL GE+VV
Sbjct: 412 PGNERLIGQMIDVKITEARTFTLRGEVVV 440


>gi|119775707|ref|YP_928447.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Shewanella
           amazonensis SB2B]
 gi|119768207|gb|ABM00778.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Shewanella amazonensis
           SB2B]
          Length = 483

 Score =  386 bits (991), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 199/450 (44%), Positives = 291/450 (64%), Gaps = 12/450 (2%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKV 80
           ++ ++  +K++GCQMN YDS +M D+    QGY      ++AD+++LNTC IREKA EKV
Sbjct: 9   LMSKKLHIKTWGCQMNEYDSSKMADLLGEYQGYTLTEEAEEADILLLNTCSIREKAQEKV 68

Query: 81  YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140
           +  LGR + LK+    +  DL++ V GCVA  EG+ I  R+  V+++ GPQT +RLPE++
Sbjct: 69  FHQLGRWKTLKD----KNPDLIIGVGGCVASQEGKAIKDRAQCVDIIFGPQTLHRLPEMI 124

Query: 141 ERARFG-KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           ++ R G K V+D  +   +KF+RL        R  G TAF++I EGC K+C+FCVVPYTR
Sbjct: 125 DQVRSGEKAVIDVSFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCSKYCSFCVVPYTR 179

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G E+SR +  ++ E  +L + GV E+ LLGQNVNA+RG   DGE CTF++LL  ++ I G
Sbjct: 180 GEEVSRPMDDIILEIAQLAEQGVREVNLLGQNVNAYRGAKHDGEICTFAELLRHVAAIDG 239

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           + RLR+TTSHP + +  +I  + D   L+ +LHLPVQSGSDRIL +M R H A EY+ II
Sbjct: 240 IDRLRFTTSHPIEFTQDIIDVYEDTPELVSFLHLPVQSGSDRILTAMKRGHMAIEYKSII 299

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            R+R  RPDI ISSDFIVGFPGET  DF+ TM L++ + +  +FSF YS R GTP +++ 
Sbjct: 300 RRLRKARPDIQISSDFIVGFPGETAQDFQDTMKLIEDVNFDMSFSFIYSARPGTPAADLP 359

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSV 438
           + VD   K +RL  LQ+ + +Q + ++   +G +  +L+E    K   +L GR+   + V
Sbjct: 360 DDVDMEEKKQRLADLQELINQQAMRYSRQMMGTVQRILVEGPSVKNPMELRGRTETNRVV 419

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468
                + +IG  + V I DV  ++L G+ +
Sbjct: 420 NFEGLHKHIGTFVDVEIVDVFPNSLRGKFI 449


>gi|108808470|ref|YP_652386.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Yersinia
           pestis Antiqua]
 gi|108811270|ref|YP_647037.1| tRNA-thiotransferase [Yersinia pestis Nepal516]
 gi|165925283|ref|ZP_02221115.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165937683|ref|ZP_02226245.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166008584|ref|ZP_02229482.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166212269|ref|ZP_02238304.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|167422525|ref|ZP_02314278.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167423482|ref|ZP_02315235.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|294504424|ref|YP_003568486.1| tRNA-thiotransferase [Yersinia pestis Z176003]
 gi|108774918|gb|ABG17437.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Yersinia pestis Nepal516]
 gi|108780383|gb|ABG14441.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Yersinia pestis Antiqua]
 gi|165914433|gb|EDR33048.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165922890|gb|EDR40041.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165992966|gb|EDR45267.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166206200|gb|EDR50680.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|166958539|gb|EDR55560.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167057652|gb|EDR67398.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|262362586|gb|ACY59307.1| tRNA-thiotransferase [Yersinia pestis D106004]
 gi|262366410|gb|ACY62967.1| tRNA-thiotransferase [Yersinia pestis D182038]
 gi|294354883|gb|ADE65224.1| tRNA-thiotransferase [Yersinia pestis Z176003]
          Length = 479

 Score =  386 bits (991), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 202/447 (45%), Positives = 286/447 (63%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS +M D+  S  GY+     ++ADL++LNTC IREKA EKV+S 
Sbjct: 8   KKLHIKTWGCQMNEYDSSKMADLLASTHGYQLTTIPEEADLLLLNTCSIREKAQEKVFSL 67

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LG+ + LK    ++   L++ V GCVA  EGE++ +R+P V+V+ GPQT +RLPE++   
Sbjct: 68  LGQWKLLK----EKNPQLIIGVGGCVASQEGEQLRQRAPCVDVIFGPQTLHRLPEMINHV 123

Query: 144 R-FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           +     VVD  +   +KF+RL        R  G TAF++I EGC+K+CTFCVVPYTRG E
Sbjct: 124 QGTNSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTFCVVPYTRGEE 178

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR    ++ E  +L   GV E+ LLGQNVNA+RG   DG+ C+F++LL  ++ I G+ R
Sbjct: 179 VSRPSDDILFEIAQLAAQGVREVNLLGQNVNAYRGATYDGDICSFAELLRLVAAIDGIDR 238

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP + +D +I  + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II ++
Sbjct: 239 VRFTTSHPIEFTDDIIDVYRDTPELVSFLHLPVQSGSDRILTMMKRAHTALEYKAIIRKL 298

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R  RPDI ISSDFIVGFPGET  DF  TM LV  I +  ++SF YSPR GTP +++   V
Sbjct: 299 RQARPDIQISSDFIVGFPGETQQDFEQTMKLVADIHFDTSYSFIYSPRPGTPAADLPNNV 358

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441
            E  K +RL  LQ+++ +Q +  +   VG +  VL+E   ++   +L GR+   + V   
Sbjct: 359 SEEEKKQRLHILQQRISQQAMEISRKMVGTVQRVLVEGTSRKNVMELAGRTENNRVVNFE 418

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                IG  + V I +V  S+L G L+
Sbjct: 419 GSPDMIGKFVDVEIVNVYASSLRGILL 445


>gi|330828617|ref|YP_004391569.1| tRNA methylthiotransferase [Aeromonas veronii B565]
 gi|328803753|gb|AEB48952.1| tRNA methylthiotransferase [Aeromonas veronii B565]
          Length = 477

 Score =  386 bits (991), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 203/447 (45%), Positives = 287/447 (64%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS +M D+   S GY      ++AD+++LNTC IREKA EKV+  
Sbjct: 3   KKLHIKTWGCQMNEYDSSKMADLLDASNGYTLTEEPEEADVLLLNTCSIREKAQEKVFHQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK +  K G  L++ V GCVA  EG+ I +R+P V++V GPQT +RLP +++  
Sbjct: 63  LGRWKKLKAN--KPG--LVIGVGGCVASQEGDAIRQRAPYVDIVFGPQTLHRLPAMIKEV 118

Query: 144 RFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           + G+   VD  +   +KF+ L        R  G TAF++I EGC K+CT+CVVPYTRG E
Sbjct: 119 QEGRGAQVDIAFPEIEKFDSLP-----EPRAEGATAFVSIMEGCSKYCTYCVVPYTRGEE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR L  V+ E  +L   GV E+ LLGQNVNA+RG   DG  CTF++LL  ++ I G+ R
Sbjct: 174 VSRPLDDVLYEIAQLAQQGVREVNLLGQNVNAYRGPTFDGGICTFAELLRLVAAIDGIDR 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +RYTTSHP + +D +I+ + D   ++ +LHLPVQSGSDRIL  M R HT  EY+  I R+
Sbjct: 234 IRYTTSHPIEFTDDIIEVYKDTPEVVSFLHLPVQSGSDRILTMMKRPHTILEYKSKIRRL 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+ RPDI ISSDFIVGFP ETD+DF ATM L++ +G+  +FSF +SPR GTP ++M + V
Sbjct: 294 RAARPDITISSDFIVGFPNETDEDFEATMKLIEDVGFDMSFSFIFSPRPGTPAADMPDDV 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVLN 441
           D  VK  RL  LQ  +  Q +    A +G    +L+E   K +  +L GR+   + V   
Sbjct: 354 DMEVKKARLARLQHVINNQAMQIGRAMLGTTQRILVEGPSKLDPMQLCGRTENNRVVNFE 413

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
            ++  IG    V IT+V+ ++L G+ +
Sbjct: 414 GQHTLIGGFADVEITEVRPNSLRGKFI 440


>gi|45440923|ref|NP_992462.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Yersinia
           pestis biovar Microtus str. 91001]
 gi|45435782|gb|AAS61339.1| putative tRNA-thiotransferase [Yersinia pestis biovar Microtus str.
           91001]
          Length = 512

 Score =  386 bits (991), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 202/447 (45%), Positives = 287/447 (64%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS +M D+  S  GY+     ++ADL++LNTC IREKA EKV+S 
Sbjct: 41  KKLHIKTWGCQMNEYDSSKMADLLASTHGYQLTTIPEEADLLLLNTCSIREKAQEKVFSL 100

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LG+ + LK    ++   L++ V GCVA  EGE++ +R+P V+V+ GPQT +RLPE++   
Sbjct: 101 LGQWKLLK----EKNPQLIIGVGGCVASQEGEQLRQRAPCVDVIFGPQTLHRLPEMINHV 156

Query: 144 R-FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           +     VVD  +   +KF+RL        R  G TAF++I EGC+K+CTFCVVPYTRG E
Sbjct: 157 QGTNSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTFCVVPYTRGEE 211

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR    ++ E  +L   GV E+ LLGQNVNA+RG   DG+ C+F++LL  ++ I G+ R
Sbjct: 212 VSRPSDDILFEIAQLAAQGVREVNLLGQNVNAYRGATYDGDICSFAELLRLVAAIDGIDR 271

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP + +D +I  + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II ++
Sbjct: 272 VRFTTSHPIEFTDDIIDVYRDTPELVSFLHLPVQSGSDRILTMMKRAHTALEYKAIIRKL 331

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R  RPDI ISSDFIVGFPGET  DF  TM LV  I +  ++SF YSPR GTP +++ + V
Sbjct: 332 RQARPDIQISSDFIVGFPGETQQDFEQTMKLVADIHFDTSYSFIYSPRPGTPAADLPDNV 391

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441
            E  K +RL  LQ+++ +Q +  +   VG +  VL+E   ++   +L GR+   + V   
Sbjct: 392 SEEEKKQRLHILQQRISQQAMEISRKMVGTVQRVLVEGTSRKNVMELAGRTENNRVVNFE 451

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                IG  + V I +V  S+L G L+
Sbjct: 452 GSPDMIGKFVDVEIVNVYASSLRGILL 478


>gi|229895960|ref|ZP_04511130.1| isopentenyl-adenosine A37 tRNA methylthiolase [Yersinia pestis
           Pestoides A]
 gi|229891217|sp|A9R6X8|MIAB_YERPG RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|229891219|sp|A4TNY6|MIAB_YERPP RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|229700883|gb|EEO88912.1| isopentenyl-adenosine A37 tRNA methylthiolase [Yersinia pestis
           Pestoides A]
          Length = 474

 Score =  386 bits (991), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 202/447 (45%), Positives = 287/447 (64%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS +M D+  S  GY+     ++ADL++LNTC IREKA EKV+S 
Sbjct: 3   KKLHIKTWGCQMNEYDSSKMADLLASTHGYQLTTIPEEADLLLLNTCSIREKAQEKVFSL 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LG+ + LK    ++   L++ V GCVA  EGE++ +R+P V+V+ GPQT +RLPE++   
Sbjct: 63  LGQWKLLK----EKNPQLIIGVGGCVASQEGEQLRQRAPCVDVIFGPQTLHRLPEMINHV 118

Query: 144 R-FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           +     VVD  +   +KF+RL        R  G TAF++I EGC+K+CTFCVVPYTRG E
Sbjct: 119 QGTNSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTFCVVPYTRGEE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR    ++ E  +L   GV E+ LLGQNVNA+RG   DG+ C+F++LL  ++ I G+ R
Sbjct: 174 VSRPSDDILFEIAQLAAQGVREVNLLGQNVNAYRGATYDGDICSFAELLRLVAAIDGIDR 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP + +D +I  + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II ++
Sbjct: 234 VRFTTSHPIEFTDDIIDVYRDTPELVSFLHLPVQSGSDRILTMMKRAHTALEYKAIIRKL 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R  RPDI ISSDFIVGFPGET  DF  TM LV  I +  ++SF YSPR GTP +++ + V
Sbjct: 294 RQARPDIQISSDFIVGFPGETQQDFEQTMKLVADIHFDTSYSFIYSPRPGTPAADLPDNV 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441
            E  K +RL  LQ+++ +Q +  +   VG +  VL+E   ++   +L GR+   + V   
Sbjct: 354 SEEEKKQRLHILQQRISQQAMEISRKMVGTVQRVLVEGTSRKNVMELAGRTENNRVVNFE 413

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                IG  + V I +V  S+L G L+
Sbjct: 414 GSPDMIGKFVDVEIVNVYASSLRGILL 440


>gi|289665632|ref|ZP_06487213.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Xanthomonas
           campestris pv. vasculorum NCPPB702]
          Length = 484

 Score =  385 bits (990), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 205/454 (45%), Positives = 294/454 (64%), Gaps = 17/454 (3%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKV 80
           +V  + ++K++GCQMN YDS +M D+   S+G E  ++ +DAD++++NTC IREKA EKV
Sbjct: 33  VVRGKLYIKTHGCQMNEYDSAKMADVLAASEGLELTDNPEDADVVLVNTCSIREKAQEKV 92

Query: 81  YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140
           +S LGR + LK      G  +++ V GCVA  EGE I++R+P V++V GPQT +RLPEL+
Sbjct: 93  FSQLGRWKALKAG----GKPVIIGVGGCVASQEGEAIVKRAPYVDLVFGPQTLHRLPELI 148

Query: 141 E-RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
             R   GK  VD  +   +KF+RL        R  G +AF++I EGC K+C+FCVVPYTR
Sbjct: 149 RARRESGKSQVDISFPEIEKFDRLP-----EPRADGPSAFVSIMEGCSKYCSFCVVPYTR 203

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-GLD-GEKCTFSDL---LYSL 254
           G E+SR    V+ E  +L   GV EI LLGQNVNA+RG  G D G+   ++DL   + ++
Sbjct: 204 GEEVSRPFEDVLVEVAQLAAQGVREINLLGQNVNAYRGGYGADAGDAAQYADLGLLIRTI 263

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
           ++I G+ R+R+TTSHP + SD L+ A+ D+  L  YLHLPVQ+GSDRIL +M R +TA E
Sbjct: 264 AQIDGIGRIRFTTSHPLEFSDSLVDAYRDVPQLANYLHLPVQAGSDRILSAMKRGYTALE 323

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
           ++  I ++R+VRPDI+ISSDFIVGFPGET+ DF  TM L++ +G+ Q+FSF YS R GTP
Sbjct: 324 FKSKIRKLRAVRPDISISSDFIVGFPGETEADFEKTMKLIEDVGFDQSFSFVYSRRPGTP 383

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSP 433
            S++ +   E VK  RL  LQ  +     S + + VG +  VL+E    ++  +L G+S 
Sbjct: 384 ASDLQDDTPEAVKQARLARLQAHISAHAASISQSMVGSVQRVLVEGPSRRDPNELTGKSE 443

Query: 434 WLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
            ++ V        IG  + V IT+   ++L G +
Sbjct: 444 NMRPVNFPGNPRLIGQFVDVLITEAMSNSLRGRI 477


>gi|269468093|gb|EEZ79803.1| 2-methylthioadenine synthetase [uncultured SUP05 cluster bacterium]
          Length = 441

 Score =  385 bits (990), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 192/445 (43%), Positives = 290/445 (65%), Gaps = 11/445 (2%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +  ++++GCQMN YDS +M D+   S G E  + + +AD+++LNTC IREKA EK++  L
Sbjct: 5   KLHIRTFGCQMNEYDSNKMFDVLKHSHGLESTDDVLEADVLLLNTCSIREKAQEKLFHQL 64

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR R LK    ++  +L++ V GCVA  EGE IL+R+P V+++ GPQT +RLP +L    
Sbjct: 65  GRWRKLK----EKNPNLVIGVGGCVASQEGELILKRAPYVDIIFGPQTLHRLPAMLNDVL 120

Query: 145 FGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             K+  +D  +   +KF+ L        +  GVT+F++I EGC K+CTFCVVPYTRG E+
Sbjct: 121 GDKKTSIDISFPEIEKFDHLP-----EPKTNGVTSFVSIMEGCSKYCTFCVVPYTRGEEV 175

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR    V+ E + L + GV E+ LLGQNVNA++G   DG+    + L+  +++I G+ R+
Sbjct: 176 SRPFDDVIKEVQILANQGVREVNLLGQNVNAYQGLMDDGQSADLALLINLVAQINGIDRI 235

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           RYTTSHP + SD LI+A+ ++  L+ +LHLP+QSGSD+IL  M R HTA EY+  I R+R
Sbjct: 236 RYTTSHPVEFSDSLIQAYAEVPELVSHLHLPIQSGSDKILTLMKRGHTALEYKSKIRRLR 295

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
            +RPDI+ISSDFI+GFPGET  DF  TM +++ IG+ ++FSF YSPR GTP +   + VD
Sbjct: 296 EIRPDISISSDFIIGFPGETKQDFNDTMKVINDIGFDKSFSFIYSPRPGTPATGYPDDVD 355

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
             +K +RL  +QK + E   + + + +G + +VL+E   ++   L G++  +++      
Sbjct: 356 MKIKKDRLSLVQKTIDESTETISKSMIGSVQKVLVENKARKDDNLFGKTENMRNTHFKGN 415

Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468
              IG I+ V+IT  + ++L G+L 
Sbjct: 416 ESLIGQIVSVKITAARGNSLVGKLT 440


>gi|149365479|ref|ZP_01887514.1| putative tRNA-thiotransferase [Yersinia pestis CA88-4125]
 gi|218929701|ref|YP_002347576.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Yersinia
           pestis CO92]
 gi|229838168|ref|ZP_04458327.1| isopentenyl-adenosine A37 tRNA methylthiolase [Yersinia pestis
           biovar Orientalis str. PEXU2]
 gi|229898721|ref|ZP_04513866.1| isopentenyl-adenosine A37 tRNA methylthiolase [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|229901508|ref|ZP_04516630.1| isopentenyl-adenosine A37 tRNA methylthiolase [Yersinia pestis
           Nepal516]
 gi|122959987|sp|Q0WDR2|MIAB_YERPE RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|229891218|sp|Q1CKP3|MIAB_YERPN RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|229891220|sp|Q1C531|MIAB_YERPA RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|115348312|emb|CAL21243.1| putative tRNA-thiotransferase [Yersinia pestis CO92]
 gi|149291892|gb|EDM41966.1| putative tRNA-thiotransferase [Yersinia pestis CA88-4125]
 gi|229681437|gb|EEO77531.1| isopentenyl-adenosine A37 tRNA methylthiolase [Yersinia pestis
           Nepal516]
 gi|229688269|gb|EEO80340.1| isopentenyl-adenosine A37 tRNA methylthiolase [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|229694534|gb|EEO84581.1| isopentenyl-adenosine A37 tRNA methylthiolase [Yersinia pestis
           biovar Orientalis str. PEXU2]
          Length = 474

 Score =  385 bits (990), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 202/447 (45%), Positives = 286/447 (63%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS +M D+  S  GY+     ++ADL++LNTC IREKA EKV+S 
Sbjct: 3   KKLHIKTWGCQMNEYDSSKMADLLASTHGYQLTTIPEEADLLLLNTCSIREKAQEKVFSL 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LG+ + LK    ++   L++ V GCVA  EGE++ +R+P V+V+ GPQT +RLPE++   
Sbjct: 63  LGQWKLLK----EKNPQLIIGVGGCVASQEGEQLRQRAPCVDVIFGPQTLHRLPEMINHV 118

Query: 144 R-FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           +     VVD  +   +KF+RL        R  G TAF++I EGC+K+CTFCVVPYTRG E
Sbjct: 119 QGTNSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTFCVVPYTRGEE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR    ++ E  +L   GV E+ LLGQNVNA+RG   DG+ C+F++LL  ++ I G+ R
Sbjct: 174 VSRPSDDILFEIAQLAAQGVREVNLLGQNVNAYRGATYDGDICSFAELLRLVAAIDGIDR 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP + +D +I  + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II ++
Sbjct: 234 VRFTTSHPIEFTDDIIDVYRDTPELVSFLHLPVQSGSDRILTMMKRAHTALEYKAIIRKL 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R  RPDI ISSDFIVGFPGET  DF  TM LV  I +  ++SF YSPR GTP +++   V
Sbjct: 294 RQARPDIQISSDFIVGFPGETQQDFEQTMKLVADIHFDTSYSFIYSPRPGTPAADLPNNV 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441
            E  K +RL  LQ+++ +Q +  +   VG +  VL+E   ++   +L GR+   + V   
Sbjct: 354 SEEEKKQRLHILQQRISQQAMEISRKMVGTVQRVLVEGTSRKNVMELAGRTENNRVVNFE 413

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                IG  + V I +V  S+L G L+
Sbjct: 414 GSPDMIGKFVDVEIVNVYASSLRGILL 440


>gi|167399273|ref|ZP_02304797.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|270489694|ref|ZP_06206768.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Yersinia pestis KIM D27]
 gi|167051777|gb|EDR63185.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|270338198|gb|EFA48975.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Yersinia pestis KIM D27]
          Length = 482

 Score =  385 bits (990), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 202/447 (45%), Positives = 286/447 (63%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS +M D+  S  GY+     ++ADL++LNTC IREKA EKV+S 
Sbjct: 11  KKLHIKTWGCQMNEYDSSKMADLLASTHGYQLTTIPEEADLLLLNTCSIREKAQEKVFSL 70

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LG+ + LK    ++   L++ V GCVA  EGE++ +R+P V+V+ GPQT +RLPE++   
Sbjct: 71  LGQWKLLK----EKNPQLIIGVGGCVASQEGEQLRQRAPCVDVIFGPQTLHRLPEMINHV 126

Query: 144 R-FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           +     VVD  +   +KF+RL        R  G TAF++I EGC+K+CTFCVVPYTRG E
Sbjct: 127 QGTNSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTFCVVPYTRGEE 181

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR    ++ E  +L   GV E+ LLGQNVNA+RG   DG+ C+F++LL  ++ I G+ R
Sbjct: 182 VSRPSDDILFEIAQLAAQGVREVNLLGQNVNAYRGATYDGDICSFAELLRLVAAIDGIDR 241

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP + +D +I  + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II ++
Sbjct: 242 VRFTTSHPIEFTDDIIDVYRDTPELVSFLHLPVQSGSDRILTMMKRAHTALEYKAIIRKL 301

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R  RPDI ISSDFIVGFPGET  DF  TM LV  I +  ++SF YSPR GTP +++   V
Sbjct: 302 RQARPDIQISSDFIVGFPGETQQDFEQTMKLVADIHFDTSYSFIYSPRPGTPAADLPNNV 361

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441
            E  K +RL  LQ+++ +Q +  +   VG +  VL+E   ++   +L GR+   + V   
Sbjct: 362 SEEEKKQRLHILQQRISQQAMEISRKMVGTVQRVLVEGTSRKNVMELAGRTENNRVVNFE 421

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                IG  + V I +V  S+L G L+
Sbjct: 422 GSPDMIGKFVDVEIVNVYASSLRGILL 448


>gi|308186037|ref|YP_003930168.1| UPF0004 protein [Pantoea vagans C9-1]
 gi|308056547|gb|ADO08719.1| UPF0004 protein [Pantoea vagans C9-1]
          Length = 506

 Score =  385 bits (990), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 201/447 (44%), Positives = 285/447 (63%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS +M D+  S  GY      ++AD+++LNTC IREKA EKV+  
Sbjct: 35  KKLHIKTWGCQMNEYDSSKMSDLLNSTHGYTLTEVPEEADILLLNTCSIREKAQEKVFHL 94

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR R LK    +   D+++ V GCVA  EG+ I +R+P V++V GPQT +RLPE++   
Sbjct: 95  LGRWRKLK----ERNPDVIIGVGGCVASQEGDHIRQRAPCVDIVFGPQTLHRLPEMINTV 150

Query: 144 RFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           R  K  VVD  +   +KF+RL        R  G TAF++I EGC+K+CTFCVVPYTRG E
Sbjct: 151 RGTKSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTFCVVPYTRGEE 205

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR    ++ E  +L   GV E+ LLGQNVNA+RG   DGE CTF++LL  ++ I G+ R
Sbjct: 206 VSRPSDDILLEIAQLAAQGVREVNLLGQNVNAYRGATFDGEICTFAELLRLVAAIDGIDR 265

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP + +D +I  + D   L+ +LHLPVQSG+DRIL  M R HTA EY+ II ++
Sbjct: 266 IRFTTSHPIEFTDDIIDVYRDTPELVSFLHLPVQSGADRILTLMKRAHTALEYKAIIRKL 325

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+ RPDI ISSDFI+GFPGET  DF  TM L+  I +  +FSF YS R GTP +++ + V
Sbjct: 326 RAARPDIEISSDFIIGFPGETQQDFEQTMKLIADINFDVSFSFIYSARPGTPAADLPDDV 385

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441
            E  K +RL  LQ ++ +Q  + +   +G +  +L+E   ++   ++ GR+   + V   
Sbjct: 386 SEEEKKQRLWILQDRINQQAQAISRRMLGTVQRILVEGISRKNVMEVSGRTENNRVVNFE 445

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                IG  + V I DV  ++L G+LV
Sbjct: 446 GTPEMIGRFVDVEIVDVYTNSLRGKLV 472


>gi|229890664|sp|A1S8S1|MIAB_SHEAM RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
          Length = 474

 Score =  385 bits (990), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 199/447 (44%), Positives = 289/447 (64%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS +M D+    QGY      ++AD+++LNTC IREKA EKV+  
Sbjct: 3   KKLHIKTWGCQMNEYDSSKMADLLGEYQGYTLTEEAEEADILLLNTCSIREKAQEKVFHQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK+    +  DL++ V GCVA  EG+ I  R+  V+++ GPQT +RLPE++++ 
Sbjct: 63  LGRWKTLKD----KNPDLIIGVGGCVASQEGKAIKDRAQCVDIIFGPQTLHRLPEMIDQV 118

Query: 144 RFG-KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           R G K V+D  +   +KF+RL        R  G TAF++I EGC K+C+FCVVPYTRG E
Sbjct: 119 RSGEKAVIDVSFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCSKYCSFCVVPYTRGEE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR +  ++ E  +L + GV E+ LLGQNVNA+RG   DGE CTF++LL  ++ I G+ R
Sbjct: 174 VSRPMDDIILEIAQLAEQGVREVNLLGQNVNAYRGAKHDGEICTFAELLRHVAAIDGIDR 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LR+TTSHP + +  +I  + D   L+ +LHLPVQSGSDRIL +M R H A EY+ II R+
Sbjct: 234 LRFTTSHPIEFTQDIIDVYEDTPELVSFLHLPVQSGSDRILTAMKRGHMAIEYKSIIRRL 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R  RPDI ISSDFIVGFPGET  DF+ TM L++ + +  +FSF YS R GTP +++ + V
Sbjct: 294 RKARPDIQISSDFIVGFPGETAQDFQDTMKLIEDVNFDMSFSFIYSARPGTPAADLPDDV 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLN 441
           D   K +RL  LQ+ + +Q + ++   +G +  +L+E    K   +L GR+   + V   
Sbjct: 354 DMEEKKQRLADLQELINQQAMRYSRQMMGTVQRILVEGPSVKNPMELRGRTETNRVVNFE 413

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
             + +IG  + V I DV  ++L G+ +
Sbjct: 414 GLHKHIGTFVDVEIVDVFPNSLRGKFI 440


>gi|22125098|ref|NP_668521.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Yersinia
           pestis KIM 10]
 gi|21957953|gb|AAM84772.1|AE013722_11 hypothetical protein y1195 [Yersinia pestis KIM 10]
          Length = 512

 Score =  385 bits (989), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 202/447 (45%), Positives = 286/447 (63%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS +M D+  S  GY+     ++ADL++LNTC IREKA EKV+S 
Sbjct: 41  KKLHIKTWGCQMNEYDSSKMADLLASTHGYQLTTIPEEADLLLLNTCSIREKAQEKVFSL 100

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LG+ + LK    ++   L++ V GCVA  EGE++ +R+P V+V+ GPQT +RLPE++   
Sbjct: 101 LGQWKLLK----EKNPQLIIGVGGCVASQEGEQLRQRAPCVDVIFGPQTLHRLPEMINHV 156

Query: 144 R-FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           +     VVD  +   +KF+RL        R  G TAF++I EGC+K+CTFCVVPYTRG E
Sbjct: 157 QGTNSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTFCVVPYTRGEE 211

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR    ++ E  +L   GV E+ LLGQNVNA+RG   DG+ C+F++LL  ++ I G+ R
Sbjct: 212 VSRPSDDILFEIAQLAAQGVREVNLLGQNVNAYRGATYDGDICSFAELLRLVAAIDGIDR 271

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP + +D +I  + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II ++
Sbjct: 272 VRFTTSHPIEFTDDIIDVYRDTPELVSFLHLPVQSGSDRILTMMKRAHTALEYKAIIRKL 331

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R  RPDI ISSDFIVGFPGET  DF  TM LV  I +  ++SF YSPR GTP +++   V
Sbjct: 332 RQARPDIQISSDFIVGFPGETQQDFEQTMKLVADIHFDTSYSFIYSPRPGTPAADLPNNV 391

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441
            E  K +RL  LQ+++ +Q +  +   VG +  VL+E   ++   +L GR+   + V   
Sbjct: 392 SEEEKKQRLHILQQRISQQAMEISRKMVGTVQRVLVEGTSRKNVMELAGRTENNRVVNFE 451

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                IG  + V I +V  S+L G L+
Sbjct: 452 GSPDMIGKFVDVEIVNVYASSLRGILL 478


>gi|242238554|ref|YP_002986735.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Dickeya dadantii Ech703]
 gi|242130611|gb|ACS84913.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Dickeya dadantii Ech703]
          Length = 476

 Score =  385 bits (989), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 200/447 (44%), Positives = 290/447 (64%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS ++ D+  S  GY+     ++AD+++LNTC IREKA EKV+  
Sbjct: 5   KKLHIKTWGCQMNEYDSSKIADLLESTHGYQLTEVAEEADVLLLNTCSIREKAQEKVFHQ 64

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR ++LK+       +L++ V GCVA  EGE I  R+  V+V+ GPQT +RLPE++   
Sbjct: 65  LGRWKSLKDL----NPELIIGVGGCVASQEGEHIRERAHYVDVIFGPQTLHRLPEMINHV 120

Query: 144 R-FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           +     +VD  +   +KF+RL        R  G TAF++I EGC+K+CTFCVVPYTRG E
Sbjct: 121 QGTHSPIVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTFCVVPYTRGEE 175

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR    ++ E  +L + GV E+ LLGQNVNA+RG+  DGE C+F+DLL  ++ I G+ R
Sbjct: 176 VSRPCDDILYEIAQLAEQGVREVNLLGQNVNAYRGETYDGEICSFADLLRLVAAIDGIDR 235

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP + +D +I  + D   L+ +LHLPVQSGSDR+L  M RRHTA EY+ II ++
Sbjct: 236 IRFTTSHPIEFTDDIIGVYEDTPELVSFLHLPVQSGSDRVLTMMKRRHTALEYKAIIRKL 295

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R VRPDI ISSDFIVGFPGET +DF  TM L+  + +  +FSF YSPR GTP ++M++ V
Sbjct: 296 RKVRPDIQISSDFIVGFPGETQEDFEQTMKLIADVNFDMSFSFIYSPRPGTPAADMVDDV 355

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441
            E  K +RL  LQ+++ +Q + ++    G +  +L+E   ++   +L GR+   + V   
Sbjct: 356 CEEEKKQRLYILQERISQQAMQYSRRMQGTVQRILVEGPSRKNVMELSGRTENNRVVNFE 415

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                IG  + V I DV  ++L G +V
Sbjct: 416 GSPDMIGKFVDVEIVDVYPNSLRGIVV 442


>gi|221134934|ref|ZP_03561237.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Glaciecola sp. HTCC2999]
          Length = 476

 Score =  385 bits (989), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 200/449 (44%), Positives = 294/449 (65%), Gaps = 16/449 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           Q+ ++K++GCQMN YDS +M D+   + GY      +DAD+I+LNTC IREKA EKV+  
Sbjct: 3   QKLYIKTWGCQMNEYDSEKMADLLDATHGYTLAEEAEDADVILLNTCSIREKAQEKVFHQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR +NLKN +     DL++ V GCVA  EG+ I +R+P V+++ GPQT +RLPE+++  
Sbjct: 63  LGRWKNLKNDK----PDLIIGVGGCVASQEGDHIRQRAPYVDIIFGPQTLHRLPEMIKDI 118

Query: 144 RFG-KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           + G K VVD  +   +KF+RL        R  G +AF++I EGC K+CTFCVVPYTRG E
Sbjct: 119 KGGSKSVVDVSFPEIEKFDRLP-----EPRAEGPSAFVSIMEGCSKYCTFCVVPYTRGEE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR +  V+ E  +L + GV E+ LLGQNVNA+RG   DG  C F++LL  ++ I G+ R
Sbjct: 174 VSRPVDDVLLEVAQLAEQGVREVNLLGQNVNAFRGPHFDGSICRFAELLELIASIDGIDR 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +RYTTSHP + +D +I+A+  +  L+ +LHLPVQSGSDRIL  M R HTA EY+  I  +
Sbjct: 234 IRYTTSHPVEFTDDIIEAYASIPELVDHLHLPVQSGSDRILNLMKRGHTAIEYKSKIRAL 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           + +RP++++SSDFI+GFPGE++ DF  TM L++ I Y  +FSF YS R GTP +++ + V
Sbjct: 294 KKIRPNLSMSSDFIIGFPGESEQDFADTMKLINDIEYDLSFSFIYSARPGTPAADLPDDV 353

Query: 383 DENVKAERLLCLQKKLRE--QQVSFNDACVGQIIEVLIEKHGKEKG-KLVGRSPWLQSVV 439
            E  K +RL  LQ+++ +  Q+++ N     Q   +L+E   K+   +L GR+   + V 
Sbjct: 354 SEAEKKQRLWILQERINQSAQRIARNMMDTEQ--RILVEGPSKKNPMELTGRTENNRVVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG  + V++TDV  ++L G ++
Sbjct: 412 FEGTPDMIGQFVDVKVTDVYSNSLRGNVI 440


>gi|58426983|gb|AAW76020.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae
           KACC10331]
          Length = 550

 Score =  385 bits (989), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 205/462 (44%), Positives = 298/462 (64%), Gaps = 17/462 (3%)

Query: 14  VSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHI 72
           V++     +V  + ++K++GCQMN YDS +M D+   S+G E  ++ ++AD++++NTC I
Sbjct: 91  VARPSAPAVVRGKLYIKTHGCQMNEYDSAKMADVLAASEGLELTDNPEEADVVLVNTCSI 150

Query: 73  REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT 132
           REKA EKV+S LGR + LK      G  +++ V GCVA  EGE I++R+P V++V GPQT
Sbjct: 151 REKAQEKVFSQLGRWKALKAG----GKPVIIGVGGCVASQEGEAIVKRAPYVDLVFGPQT 206

Query: 133 YYRLPELLE-RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCT 191
            +RLPEL+  R   GK  VD  +   +KF+RL        R  G +AF++I EGC K+C+
Sbjct: 207 LHRLPELIRARRESGKSQVDISFPEIEKFDRLP-----EPRAEGPSAFVSIMEGCSKYCS 261

Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-GLD-GEKCTFSD 249
           FCVVPYTRG E+SR    V+ E  +L   GV EI LLGQNVNA+RG  G D G+   ++D
Sbjct: 262 FCVVPYTRGEEVSRPFEDVLVEVAQLAAQGVREINLLGQNVNAYRGAYGADAGDPAQYAD 321

Query: 250 L---LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306
           L   + ++++I+G+ R+R+TTSHP + SD L+ A+ D+  L  YLHLPVQ+GSDRIL +M
Sbjct: 322 LGLLIRTIAQIEGIGRIRFTTSHPLEFSDSLVDAYRDVPQLANYLHLPVQAGSDRILSAM 381

Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
            R +TA E++  I ++R+VRPDI+ISSDFIVGFPGET+ DF  TM L++ +G+ Q+FSF 
Sbjct: 382 KRGYTALEFKSRIRKLRAVRPDISISSDFIVGFPGETEADFEKTMKLIEDVGFDQSFSFV 441

Query: 367 YSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEK 425
           YS R GTP S++ +   E VK  RL  LQ  +     S + + VG +  VL+E    ++ 
Sbjct: 442 YSRRPGTPASDLQDDTPETVKQARLARLQAHISAHAASISQSMVGSVQRVLVEGPSRRDP 501

Query: 426 GKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
            +L G+S  ++ V        IG  + V IT+   ++L G +
Sbjct: 502 NELTGKSENMRPVNFPGNPRLIGQFVDVLITEAMSNSLRGRI 543


>gi|90416864|ref|ZP_01224793.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [marine gamma
           proteobacterium HTCC2207]
 gi|90331211|gb|EAS46455.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [marine gamma
           proteobacterium HTCC2207]
          Length = 451

 Score =  385 bits (988), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 203/448 (45%), Positives = 290/448 (64%), Gaps = 13/448 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  + ++GCQMN YDS RM D+   S      +S +DAD+I+LNTC IREKA EKV+  
Sbjct: 13  KKLHIVTHGCQMNEYDSARMRDLLGDSHQMIATDSAEDADVILLNTCSIREKAQEKVFHQ 72

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR ++LK +      DL++ V GCVA  EG  I +R+P V++V GPQT +RLPE++E  
Sbjct: 73  LGRWKHLKEA----NPDLIIGVGGCVASQEGAAIAKRAPFVDLVFGPQTLHRLPEMMETN 128

Query: 144 RF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           +  G  VVD  +   +KF+RL   +       GV+AF++I EGC K+C+FCVVPYTRG E
Sbjct: 129 QADGTVVVDISFPEIEKFDRLPTPEAD-----GVSAFVSIMEGCSKYCSFCVVPYTRGEE 183

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR ++ V+ E   L   GV E+ LLGQNVNA+ G+  DG  C F++LL  +++I G+ R
Sbjct: 184 VSRPMADVLAEIAALAQQGVREVNLLGQNVNAYLGEMPDGSICDFAELLPYVADIAGIDR 243

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +RYTTSHP + SD LI+ +  +  L+ +LHLPVQSGSD+IL +M R HTA EY+  I R+
Sbjct: 244 IRYTTSHPVEFSDRLIETYARVPELVSHLHLPVQSGSDKILMAMKRGHTAIEYKSKIRRL 303

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R VRPDI+ISSDFI+GFP E+++DF ATM L+  IG+  +FSF YS R GTP +++ +  
Sbjct: 304 REVRPDISISSDFIIGFPNESEEDFSATMKLISDIGFDTSFSFIYSARPGTPAADLPDNT 363

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSVVLN 441
            E VK +RL  LQ ++ +     +   VG+  ++L+     K+ G+L GR+   + V   
Sbjct: 364 SEAVKKQRLKILQDRISQNAAEISRRMVGKREKLLVTGISKKDPGQLQGRTENNRVVNFR 423

Query: 442 SKNHN-IGDIIKVRITDVKISTLYGELV 468
           S NH  IG  +   +T+   ++L GEL 
Sbjct: 424 SDNHALIGTFVDSIVTEALTNSLRGELA 451


>gi|145298103|ref|YP_001140944.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Aeromonas
           salmonicida subsp. salmonicida A449]
 gi|229890493|sp|A4SJX4|MIAB_AERS4 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|142850875|gb|ABO89196.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Aeromonas salmonicida
           subsp. salmonicida A449]
          Length = 477

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 202/447 (45%), Positives = 286/447 (63%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS +M D+   S GY      ++AD+++LNTC IREKA EKV+  
Sbjct: 3   KKLHIKTWGCQMNEYDSSKMADLLDASNGYTLTEEPEEADVLLLNTCSIREKAQEKVFHQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK +  K G  L++ V GCVA  EGE I  R+P V++V GPQT +RLP ++++ 
Sbjct: 63  LGRWKKLKAN--KPG--LVIGVGGCVASQEGENIRSRAPYVDIVFGPQTLHRLPAMIKQV 118

Query: 144 RFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           + G+   VD  +   +KF+ L        R  G TAF++I EGC K+C+FCVVPYTRG E
Sbjct: 119 QEGRGAQVDIAFPEIEKFDSLP-----EPRAEGATAFVSIMEGCSKYCSFCVVPYTRGEE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR +  V+ E  +L + GV E+ LLGQNVNA+RG   DG  C+F++LL  ++ I G+ R
Sbjct: 174 VSRPMDDVLYEIAQLAEQGVREVNLLGQNVNAYRGPTFDGSICSFAELLRLVAAIDGIDR 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +RYTTSHP + +D +I+ + D   ++ +LHLPVQSGSDRIL  M R HT  EY+  I R+
Sbjct: 234 IRYTTSHPIEFTDDIIEVYKDTPEVVSFLHLPVQSGSDRILTMMKRPHTVLEYKSKIRRL 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+ RPDI ISSDFIVGFP ETD+DF ATM L+++I +  +FSF YSPR GTP ++M + V
Sbjct: 294 RAARPDITISSDFIVGFPNETDEDFEATMKLIEEINFDMSFSFIYSPRPGTPAADMPDDV 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVLN 441
           D  VK  RL  LQ  +  Q +    A +G    +L+E   + +  +L GR+   + V   
Sbjct: 354 DMEVKKVRLARLQHVINNQSMQIGRAMLGSTQRILVEGPSRLDPMQLCGRTENNRVVNFE 413

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
             +  IG    V IT+V+ ++L G  +
Sbjct: 414 GAHTLIGGFADVEITEVRPNSLRGRFI 440


>gi|327482390|gb|AEA85700.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Pseudomonas stutzeri DSM 4166]
          Length = 437

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 206/449 (45%), Positives = 288/449 (64%), Gaps = 18/449 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ F++++GCQMN YDS RM D+    Q  E   +  +AD+I+LNTC IREKA EKV+S 
Sbjct: 3   RKLFIETHGCQMNEYDSSRMVDLLGEHQAMEITENPAEADVILLNTCSIREKAQEKVFSQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR R LK    ++   L++ V GCVA  EG  I  R+P V+VV GPQT +RLPE+++ A
Sbjct: 63  LGRWRELK----QDNPQLVIGVGGCVASQEGAAIRDRAPYVDVVFGPQTLHRLPEMIDAA 118

Query: 144 RFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           R  +   VD  +   +KF+RL        R  G +A++++ EGC K+CTFCVVPYTRG E
Sbjct: 119 RTTRTPQVDISFPEIEKFDRLP-----EPRVDGPSAYVSVMEGCSKYCTFCVVPYTRGEE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR L+ V+ E   L +NGV E+TLLGQNVN +R  G D     F+DLL++++ I+G+ R
Sbjct: 174 VSRPLADVLAEIVHLAENGVKEVTLLGQNVNGYRHDGHD-----FADLLHAVAAIEGIGR 228

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +RYTTSHP + SD +I+AH D+  L+ YLHLPVQ+GSDRIL +M R HTA EY+  I R+
Sbjct: 229 IRYTTSHPLEFSDAIIQAHADIPQLVKYLHLPVQAGSDRILAAMKRNHTALEYKSRIRRL 288

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           ++  PDI ISSDFIVGFPGETD DF  TM L++ +G+  ++SF YS R GTP +++ +  
Sbjct: 289 KAAVPDILISSDFIVGFPGETDKDFEQTMKLIEDVGFDFSYSFVYSARPGTPAADLADDT 348

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLN 441
            E VK +RL  LQ+++ +Q    +   VG    +L+  +  K+ G L GR+   + V   
Sbjct: 349 PEEVKKQRLAILQQRINQQGFENSRRMVGTTQRILVSDYSKKDPGMLQGRTEHNRIVNFR 408

Query: 442 SKNHN-IGDIIKVRITDVKISTLYGELVV 469
             N   IG  + V I D    +L G L+ 
Sbjct: 409 CDNPRLIGQFVDVHIDDALPHSLRGTLLA 437


>gi|91209704|ref|YP_539690.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Escherichia
           coli UTI89]
 gi|117622870|ref|YP_851783.1| isopentenyl-adenosine A37 tRNA methylthiolase [Escherichia coli
           APEC O1]
 gi|218557592|ref|YP_002390505.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Escherichia
           coli S88]
 gi|122424608|sp|Q1REQ5|MIAB_ECOUT RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|229890519|sp|B7MFS7|MIAB_ECO45 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|229890527|sp|A1A8S9|MIAB_ECOK1 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|91071278|gb|ABE06159.1| hypothetical protein UTI89_C0659 [Escherichia coli UTI89]
 gi|115511994|gb|ABJ00069.1| isopentenyl-adenosine A37 tRNA methylthiolase [Escherichia coli
           APEC O1]
 gi|218364361|emb|CAR02036.1| isopentenyl-adenosine A37 tRNA methylthiolase [Escherichia coli
           S88]
 gi|294489495|gb|ADE88251.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli IHE3034]
 gi|307627908|gb|ADN72212.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Escherichia
           coli UM146]
 gi|315287089|gb|EFU46503.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli MS
           110-3]
 gi|323952768|gb|EGB48636.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli H252]
 gi|323958414|gb|EGB54120.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli H263]
          Length = 474

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 200/448 (44%), Positives = 293/448 (65%), Gaps = 14/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS +M D+   + GY+  +  ++AD+++LNTC IREKA EKV+  
Sbjct: 3   KKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTDVAEEADVLLLNTCSIREKAQEKVFHQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK    ++  DL++ V GCVA  EGE I +R+  V+++ GPQT +RLPE++   
Sbjct: 63  LGRWKLLK----EKNPDLIIGVGGCVASQEGEHIRQRAHYVDIIFGPQTLHRLPEMINSV 118

Query: 144 RFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           R G R  VVD  +   +KF+RL        R  G TAF++I EGC+K+CT+CVVPYTRG 
Sbjct: 119 R-GDRSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTYCVVPYTRGE 172

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E+SR    ++ E  +L   GV E+ LLGQNVNAWRG+  DG   +F+DLL  ++ I G+ 
Sbjct: 173 EVSRPSDDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTTGSFADLLRLVAAIDGID 232

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHP + +D +I+ + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II +
Sbjct: 233 RIRFTTSHPIEFTDDIIEVYRDTPELVSFLHLPVQSGSDRILNLMGRTHTALEYKAIIRK 292

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R+ RPDI ISSDFIVGFPGET DDF  TM L+  + +  ++SF +S R GTP ++M++ 
Sbjct: 293 LRAARPDIQISSDFIVGFPGETTDDFEKTMKLIADVNFDMSYSFIFSARPGTPAADMVDD 352

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVL 440
           V E  K +RL  LQ+++ +Q ++++   +G    +L+E   ++   +L GR+   + V  
Sbjct: 353 VPEEEKKQRLYILQERINQQAMAWSRRMLGTTQRILVEGTSRKSIMELSGRTENNRVVNF 412

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 IG  + V ITDV  ++L G++V
Sbjct: 413 EGTPDMIGKFVDVEITDVYPNSLRGKVV 440


>gi|224582505|ref|YP_002636303.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella
           enterica subsp. enterica serovar Paratyphi C strain
           RKS4594]
 gi|224467032|gb|ACN44862.1| MiaB protein (putative tRNA-thiotransferase (or
           tRNA-methylthiotransferase)) [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
          Length = 488

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 200/448 (44%), Positives = 292/448 (65%), Gaps = 14/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS +M D+   + GY+  +  ++AD+++LNTC IREKA EKV+  
Sbjct: 17  KKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTDVAEEADVLLLNTCSIREKAQEKVFHQ 76

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR R LK    ++  DL++ V GCVA  EGE I +R+  V+++ GPQT +RLPE++   
Sbjct: 77  LGRWRLLK----EKNPDLIIGVGGCVASQEGEHIRQRAHYVDIIFGPQTLHRLPEMINSV 132

Query: 144 RFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           R G R  VVD  +   +KF+RL        R  G TAF++I EGC+K+CT+CVVPYTRG 
Sbjct: 133 R-GDRSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTYCVVPYTRGE 186

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E+SR    ++ E  +L   GV E+ LLGQNVNAWRG+  DG    F+DLL  ++ I G+ 
Sbjct: 187 EVSRPSDDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTTGIFADLLRLVAAIDGID 246

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHP + +D +I+ + D   L+ +LHLPVQSGSDR+L  M R HTA EY+ II +
Sbjct: 247 RIRFTTSHPIEFTDDIIEVYRDTPELVSFLHLPVQSGSDRVLNLMGRTHTALEYKAIIRK 306

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R+ RPDI ISSDFIVGFPGET DDF  TM L+  + +  ++SF +S R GTP ++M++ 
Sbjct: 307 LRAARPDIQISSDFIVGFPGETTDDFEKTMKLIADVNFDMSYSFIFSARPGTPAADMVDD 366

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVL 440
           V E  K +RL  LQ+++ +Q ++++   +G    +L+E   ++   +L GR+   + V  
Sbjct: 367 VPEEEKKQRLYILQERINQQAMAWSRRMLGTTQRILVEGTSRKNIMELSGRTENNRVVNF 426

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 IG  + V ITDV  ++L G++V
Sbjct: 427 EGTPEMIGKFVDVEITDVYPNSLRGKVV 454


>gi|332288529|ref|YP_004419381.1| hypothetical protein UMN179_00448 [Gallibacterium anatis UMN179]
 gi|330431425|gb|AEC16484.1| conserved hypothetical protein [Gallibacterium anatis UMN179]
          Length = 462

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 204/436 (46%), Positives = 284/436 (65%), Gaps = 12/436 (2%)

Query: 36  MNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSR 94
           MN YDS +M D+  S  G E   + ++AD+++LNTC IREKA EKV+  LGR ++LK   
Sbjct: 1   MNEYDSAKMADLLNSTHGLELTENAEEADILLLNTCSIREKAQEKVFHQLGRWKDLK--- 57

Query: 95  IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR-VVDTD 153
            K+  DL++ V GCVA  EGE I  R+P V+++ GPQT +RLPE++ + R GK  VVD  
Sbjct: 58  -KQNPDLIIGVGGCVASQEGEHIRDRAPYVDIIFGPQTLHRLPEMVNQIRGGKSAVVDVS 116

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           +   +KF+RL        R  G TAF++I EGC+K+C+FCVVPYTRG E+SR +  V+ E
Sbjct: 117 FPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCSFCVVPYTRGEEVSRPVDDVLFE 171

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
             +L + GV E+ LLGQNVNA+RG   DG  C+F++LL  ++ I G+ RLR+TTSHP + 
Sbjct: 172 IAQLAEQGVREVNLLGQNVNAYRGPTHDGGICSFAELLRLVAAIDGIDRLRFTTSHPIEF 231

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
           +D +I  + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II ++R  RPDI ISS
Sbjct: 232 TDDIIDVYRDTPELVSFLHLPVQSGSDRILSMMKRNHTALEYKAIIRKLREARPDIQISS 291

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLC 393
           DFIVGFPGET  DF  TM+L+ ++ +  +FSF YS R GTP ++M + V E  K +RL  
Sbjct: 292 DFIVGFPGETAQDFEQTMNLIAQVNFDMSFSFIYSARPGTPAADMPDDVSEEEKKQRLYL 351

Query: 394 LQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNSKNHNIGDIIK 452
           LQ+++ +Q   F+   +G    +L+E   K+   +L GR+   + V        IG  + 
Sbjct: 352 LQERINQQASQFSRRMLGTEQRILVEGPSKKDIMELTGRTENNRIVNFVGSPDMIGKFVD 411

Query: 453 VRITDVKISTLYGELV 468
           V+ITDV  ++L GE+V
Sbjct: 412 VKITDVYTNSLRGEVV 427


>gi|90581601|ref|ZP_01237392.1| putative 2-methylthioadenine synthetase [Vibrio angustum S14]
 gi|90437184|gb|EAS62384.1| putative 2-methylthioadenine synthetase [Vibrio angustum S14]
          Length = 475

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 203/447 (45%), Positives = 289/447 (64%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS +M D+   + G+E     ++AD+++LNTC IREKA EKV+  
Sbjct: 3   KKLLIKTWGCQMNEYDSSKMADLLNAANGFELTEIPEEADVVLLNTCSIREKAQEKVFHQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK+++     DL++ V GCVA  EG+ I +R+P V+V+ GPQT +RLPE+++R+
Sbjct: 63  LGRWKKLKDNK----PDLVIGVGGCVATQEGDSIRKRAPYVDVIFGPQTLHRLPEMIKRS 118

Query: 144 RFG-KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           +   K V+D  +   +KF+ L        R  G TAF++I EGC K+CT+CVVPYTRG E
Sbjct: 119 QSNEKTVMDISFPEVEKFDSLP-----EPRAEGATAFVSIMEGCSKYCTYCVVPYTRGEE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR L  V+ E  +L + GV E+ LLGQNVNA+RG   DGE  +F++LL  ++ I G+ R
Sbjct: 174 VSRPLDDVLFEIAQLAEQGVREVNLLGQNVNAYRGPMHDGEVASFAELLRLVAAIDGIDR 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +RYTTSHP + +D +I  + D   L+ YLHLPVQSGSDRIL  M R HTA EY+  I ++
Sbjct: 234 IRYTTSHPIEFTDDIIDVYKDTPELVNYLHLPVQSGSDRILTMMKRPHTAIEYKSKIRKL 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R VRPDI +SSDFIV FPGETD DF  TM L+ +I +  ++SF +SPR GTP ++    +
Sbjct: 294 RKVRPDITMSSDFIVAFPGETDQDFEDTMKLIREIDFDISYSFIFSPRPGTPAADYPCDL 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441
            E VK ERL  LQ++L  Q +      +G    +L+E   ++   +L GR+   + V   
Sbjct: 354 SEEVKKERLYALQQQLNSQAMRHARQMLGTEQRILVEGPSRKNVMELRGRTENNRIVNFE 413

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                IG  + V+I DV  ++L GELV
Sbjct: 414 GSADLIGQFVDVKIVDVFTNSLRGELV 440


>gi|218688478|ref|YP_002396690.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Escherichia
           coli ED1a]
 gi|293408786|ref|ZP_06652625.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli B354]
 gi|306812915|ref|ZP_07447108.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Escherichia
           coli NC101]
 gi|331645818|ref|ZP_08346921.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli M605]
 gi|229890523|sp|B7MPH7|MIAB_ECO81 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|218426042|emb|CAR06859.1| isopentenyl-adenosine A37 tRNA methylthiolase [Escherichia coli
           ED1a]
 gi|222032414|emb|CAP75153.1| UPF0004 protein yleA [Escherichia coli LF82]
 gi|291471964|gb|EFF14447.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli B354]
 gi|305853678|gb|EFM54117.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Escherichia
           coli NC101]
 gi|312945201|gb|ADR26028.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Escherichia
           coli O83:H1 str. NRG 857C]
 gi|320194162|gb|EFW68794.1| tRNA-i(6)A37 methylthiotransferase [Escherichia coli WV_060327]
 gi|323191295|gb|EFZ76559.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli RN587/1]
 gi|330910419|gb|EGH38929.1| tRNA-i(6)A37 methylthiotransferase [Escherichia coli AA86]
 gi|331044570|gb|EGI16697.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli M605]
          Length = 474

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 200/448 (44%), Positives = 293/448 (65%), Gaps = 14/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS +M D+   + GY+  +  ++AD+++LNTC IREKA EKV+  
Sbjct: 3   KKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTDVAEEADVLLLNTCSIREKAQEKVFHQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK    ++  DL++ V GCVA  EGE I +R+  V+++ GPQT +RLPE++   
Sbjct: 63  LGRWKLLK----EKNPDLIIGVGGCVASQEGEHIRQRAHYVDIIFGPQTLHRLPEMINSV 118

Query: 144 RFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           R G R  VVD  +   +KF+RL        R  G TAF++I EGC+K+CT+CVVPYTRG 
Sbjct: 119 R-GDRSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTYCVVPYTRGE 172

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E+SR    ++ E  +L   GV E+ LLGQNVNAWRG+  DG   TF+DLL  ++ I G+ 
Sbjct: 173 EVSRPSDDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTTGTFADLLRLVAAIDGID 232

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHP + +D +I+ + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II +
Sbjct: 233 RIRFTTSHPIEFTDDIIEVYRDTPELVSFLHLPVQSGSDRILNLMGRTHTALEYKAIIRK 292

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R+ RPDI ISSDFIVGFPGET +DF  TM L+  + +  ++SF +S R GTP ++M++ 
Sbjct: 293 LRAARPDIQISSDFIVGFPGETTEDFEKTMKLIADVNFDMSYSFIFSARPGTPAADMVDD 352

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVL 440
           V E  K +RL  LQ+++ +Q ++++   +G    +L+E   ++   +L GR+   + V  
Sbjct: 353 VPEEEKKQRLYILQERINQQAMAWSRRMLGTTQRILVEGTSRKSIMELSGRTENNRVVNF 412

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 IG  + V ITDV  ++L G++V
Sbjct: 413 EGTPDMIGKFVDVEITDVYPNSLRGKVV 440


>gi|237707370|ref|ZP_04537851.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|226898580|gb|EEH84839.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
          Length = 486

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 200/448 (44%), Positives = 293/448 (65%), Gaps = 14/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS +M D+   + GY+  +  ++AD+++LNTC IREKA EKV+  
Sbjct: 15  KKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTDVAEEADVLLLNTCSIREKAQEKVFHQ 74

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK    ++  DL++ V GCVA  EGE I +R+  V+++ GPQT +RLPE++   
Sbjct: 75  LGRWKLLK----EKNPDLIIGVGGCVASQEGEHIRQRAHYVDIIFGPQTLHRLPEMINSV 130

Query: 144 RFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           R G R  VVD  +   +KF+RL        R  G TAF++I EGC+K+CT+CVVPYTRG 
Sbjct: 131 R-GDRSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTYCVVPYTRGE 184

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E+SR    ++ E  +L   GV E+ LLGQNVNAWRG+  DG   +F+DLL  ++ I G+ 
Sbjct: 185 EVSRPSDDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTTGSFADLLRLVAAIDGID 244

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHP + +D +I+ + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II +
Sbjct: 245 RIRFTTSHPIEFTDDIIEVYRDTPELVSFLHLPVQSGSDRILNLMGRTHTALEYKAIIRK 304

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R+ RPDI ISSDFIVGFPGET DDF  TM L+  + +  ++SF +S R GTP ++M++ 
Sbjct: 305 LRAARPDIQISSDFIVGFPGETTDDFEKTMKLIADVNFDMSYSFIFSARPGTPAADMVDD 364

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVL 440
           V E  K +RL  LQ+++ +Q ++++   +G    +L+E   ++   +L GR+   + V  
Sbjct: 365 VPEEEKKQRLYILQERINQQAMAWSRRMLGTTQRILVEGTSRKSIMELSGRTENNRVVNF 424

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 IG  + V ITDV  ++L G++V
Sbjct: 425 EGTPDMIGKFVDVEITDVYPNSLRGKVV 452


>gi|117924735|ref|YP_865352.1| RNA modification protein [Magnetococcus sp. MC-1]
 gi|229890560|sp|A0L7K3|MIAB_MAGSM RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|117608491|gb|ABK43946.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Magnetococcus sp. MC-1]
          Length = 437

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 206/447 (46%), Positives = 294/447 (65%), Gaps = 14/447 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           +  ++K++GCQMN YDS RM D+   S  ++  +  + ADLI+LNTCHIREKA +K++S 
Sbjct: 2   KHLYIKTFGCQMNSYDSTRMADLLGESHAFQSTDDPEKADLIILNTCHIREKAEDKLFSE 61

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR+R L    +      ++ V GCV QAEG  I  R+P V +V GPQ Y++LP++++RA
Sbjct: 62  LGRLRPLAERGV------ILAVGGCVGQAEGRTIFSRAPYVRMVFGPQNYHKLPQMIQRA 115

Query: 144 RFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
             G+ RV+  D    DKF+ L  V     R +GV   +T+QEGCDKFC FCVVPYTRG E
Sbjct: 116 LDGETRVIAEDIPSVDKFDNLPQV-----RAQGVVGQVTVQEGCDKFCAFCVVPYTRGRE 170

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR ++ ++ E   L   GV E+ LLGQNVNA+ G   +G     + L+  ++ I+G+ R
Sbjct: 171 WSRPVAAILAETEALAQQGVREVLLLGQNVNAYAGVDEEGVSYDLALLIRRVALIEGIER 230

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+ TSHP DM++ L++  G+++ L PYLHLP+QSGSD IL +M R HT  EY   ++++
Sbjct: 231 IRFVTSHPVDMNEDLVEVFGEIEQLAPYLHLPIQSGSDAILAAMQRGHTVEEYCTWVEKV 290

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+V PD+A++SDFIVGFPGET+ DF+AT+DL+ ++G+  A+SFKYS R GTP ++M EQV
Sbjct: 291 RAVCPDVALASDFIVGFPGETEQDFQATLDLISRLGFDHAYSFKYSSRPGTPAADMPEQV 350

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441
           DE  K+ RL  LQ+ L  QQ+  N A VG+   VL+E   K++ G+L GRS  L++V   
Sbjct: 351 DEAEKSRRLERLQQLLNTQQLQRNKARVGRRESVLVEGVSKKRDGELSGRSGTLRTVNFA 410

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                IG  + V I +   ++L G LV
Sbjct: 411 GPVALIGQFVDVEIVEGLPNSLRGRLV 437


>gi|123443200|ref|YP_001007174.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Yersinia
           enterocolitica subsp. enterocolitica 8081]
 gi|229891035|sp|A1JQA3|MIAB_YERE8 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|122090161|emb|CAL13024.1| putative tRNA-thiotransferase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 474

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 200/447 (44%), Positives = 287/447 (64%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS +M D+  S  GY+     ++ADL++LNTC IREKA EKV+S 
Sbjct: 3   KKLHIKTWGCQMNEYDSSKMADLLASTHGYQLTEIPEEADLLLLNTCSIREKAQEKVFSL 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LG+ + LK    ++  +L++ V GCVA  EGE + +R+P V+V+ GPQT +RLPE++   
Sbjct: 63  LGQWKLLK----EKNPELIIGVGGCVASQEGEHLRQRAPCVDVIFGPQTLHRLPEMINHV 118

Query: 144 R-FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           +     VVD  +   +KF+RL        R  G TAF++I EGC+K+CTFCVVPYTRG E
Sbjct: 119 QGTHSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTFCVVPYTRGEE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR    ++ E  +L   GV E+ LLGQNVNA+RG   DG+ C+F++LL  ++ I G+ R
Sbjct: 174 VSRPSDDILFEIAQLAAQGVREVNLLGQNVNAYRGATYDGDICSFAELLRLVAAIDGIDR 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP + +D +I  + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II ++
Sbjct: 234 VRFTTSHPIEFTDDIIDVYRDTPELVSFLHLPVQSGSDRILTMMKRAHTALEYKAIIRKL 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R  RPDI ISSDFI+GFPGET  DF  TM LV  + +  ++SF YSPR GTP +++ + V
Sbjct: 294 RQARPDIQISSDFIIGFPGETQQDFEQTMKLVADVRFDTSYSFIYSPRPGTPAADLPDDV 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441
            E  K +RL  LQ+++ +Q +  +   VG +  +L+E   ++   +L GR+   + V   
Sbjct: 354 SEEEKKQRLHILQQRITQQAMEISREMVGTVQRILVEGTSRKNVMELAGRTENNRVVNFE 413

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                IG  + V I DV  S+L G L+
Sbjct: 414 GTPEMIGKFVDVEIVDVYASSLRGILL 440


>gi|114561896|ref|YP_749409.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Shewanella frigidimarina
           NCIMB 400]
 gi|122300718|sp|Q087J4|MIAB_SHEFN RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|114333189|gb|ABI70571.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Shewanella frigidimarina
           NCIMB 400]
          Length = 474

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 199/447 (44%), Positives = 288/447 (64%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS +M D+    QGY       +AD+++LNTC IREKA EKV+  
Sbjct: 3   KKLHIKTWGCQMNEYDSSKMADLLDDYQGYTLTEDASEADVLLLNTCSIREKAQEKVFHQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR ++LK+    +  +L++ V GCVA  EG+ I  R+  V+++ GPQT +RLPE++E+ 
Sbjct: 63  LGRWKSLKD----KNPNLIIGVGGCVASQEGKAIKDRAQCVDIIFGPQTLHRLPEMIEQI 118

Query: 144 RFG-KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           + G K V+D  +   +KF+RL        R  G TAF++I EGC K+C+FCVVPYTRG E
Sbjct: 119 QRGEKAVIDISFPEIEKFDRLP-----EPRADGPTAFVSIMEGCSKYCSFCVVPYTRGEE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR L  V+ E  +L   GV E+ LLGQNVNA+RG   D E CTF++LL  ++ I G+ R
Sbjct: 174 VSRPLDDVILEVAQLAAQGVREVNLLGQNVNAYRGATHDDEICTFAELLRLVASIDGIDR 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LR+TTSHP + +  +I  + D   L+ +LHLPVQSGSDRIL  M R H A EY+ II R+
Sbjct: 234 LRFTTSHPIEFTQDIIDVYEDTPELVSFLHLPVQSGSDRILTQMKRGHMAIEYKSIIRRL 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R  RPDI ISSDFI+GFPGE+ DDF  TM L++ + +  +FSF YS R GTP +++ + V
Sbjct: 294 RKARPDIQISSDFIIGFPGESKDDFADTMKLIEDVAFDHSFSFIYSARPGTPAADLPDDV 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLN 441
            +  K +RL  LQ ++ +Q + ++   +G +  +L+E    K   +L GR+   + V   
Sbjct: 354 SDEEKKQRLAILQDRITQQAMRYSRQMLGTVQRILVEGPSVKNPMELRGRTENSRVVNFE 413

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
           + + +IG  + V+I DV  ++L GE V
Sbjct: 414 AAHTHIGSFVDVKIVDVYTNSLRGEFV 440


>gi|312171728|emb|CBX79986.1| UPF0004 protein PA3980 [Erwinia amylovora ATCC BAA-2158]
          Length = 480

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 199/447 (44%), Positives = 289/447 (64%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS +M D+  S  GY      +DAD+++LNTC IREKA EKV+  
Sbjct: 9   KKLHIKTWGCQMNEYDSSKMADLLNSTHGYTLTEQAEDADVLLLNTCSIREKAQEKVFGL 68

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK +      DL++ V GCVA  EG +I +R+  V++V GPQT +RLPE++   
Sbjct: 69  LGRWKKLKEA----NPDLIIGVGGCVASQEGAKIRQRASCVDIVFGPQTLHRLPEMINSV 124

Query: 144 RFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           R  K  VVD  +   +KF+R+        R  G TAF++I EGC+K+CTFCVVPYTRG E
Sbjct: 125 RGSKSPVVDVSFPEIEKFDRMP-----EPRADGPTAFVSIMEGCNKYCTFCVVPYTRGEE 179

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR    ++ E  +L   GV E+ LLGQNVNA+RG   DG  C+F++LL  ++ I G+ R
Sbjct: 180 VSRPADDILFEVAQLAAQGVREVNLLGQNVNAYRGATYDGGICSFAELLRLVAAIDGIDR 239

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP + +D +I+ + D   L+ YLHLPVQSG+DRIL  M R HTA EY+ II ++
Sbjct: 240 IRFTTSHPIEFTDDIIEVYRDTPELVSYLHLPVQSGADRILTLMKRAHTALEYKAIIRKL 299

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
            + RPDI ISSDFI+GFPGET  DF  TM LV +I +  ++SF YS R GTP + + + V
Sbjct: 300 LAARPDIQISSDFIIGFPGETQADFEQTMKLVGEINFDTSYSFIYSARPGTPAAELPDDV 359

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441
            E+ K +RL  LQ ++ +Q ++++   +G +  +L+E   ++   +L GR+   + V   
Sbjct: 360 SEDEKKQRLYVLQDRISQQAMAWSRRKLGTVQRILVEGTSRKNVMELSGRTECNRVVNFE 419

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
           +   +IG  + V+ITDV  ++L G L+
Sbjct: 420 ATPDHIGKFVDVKITDVYANSLRGVLL 446


>gi|117619554|ref|YP_857732.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
 gi|229890492|sp|A0KN81|MIAB_AERHH RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|117560961|gb|ABK37909.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
          Length = 477

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 203/447 (45%), Positives = 286/447 (63%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS +M D+   S GY      ++AD+++LNTC IREKA EKV+  
Sbjct: 3   KKLHIKTWGCQMNEYDSSKMADLLDASNGYTLTEEPEEADVLLLNTCSIREKAQEKVFHQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK +  K G  L++ V GCVA  EG+ I  R+P V++V GPQT +RLP ++++ 
Sbjct: 63  LGRWKKLKAN--KPG--LVIGVGGCVASQEGDNIRTRAPYVDIVFGPQTLHRLPTMIKQV 118

Query: 144 RFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           + G+   VD  +   +KF+ L        R  G TAF++I EGC K+C+FCVVPYTRG E
Sbjct: 119 QEGRGAQVDVAFPEIEKFDSLP-----EPRAEGATAFVSIMEGCSKYCSFCVVPYTRGEE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR L  V+ E  +L   GV E+ LLGQNVNA+RG   DG  CTF++LL  ++ I G+ R
Sbjct: 174 VSRPLDDVLYEIAQLAQQGVREVNLLGQNVNAYRGPTFDGGICTFAELLRLVAAIDGIDR 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +RYTTSHP + +D +I+ + D   ++ +LHLPVQSGSDRIL  M R HT  EY+  I R+
Sbjct: 234 IRYTTSHPIEFTDDIIEVYKDTPEVVSFLHLPVQSGSDRILTMMKRPHTVLEYKSKIRRL 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+ RPDI ISSDFIVGFP ETD+DF ATM L+++I +  +FSF YSPR GTP +++ + V
Sbjct: 294 RAARPDITISSDFIVGFPNETDEDFEATMKLIEEINFDMSFSFIYSPRPGTPAADLPDDV 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVLN 441
           D  VK  RL  LQ  +  Q +    A +G    +L+E   K +  +L GR+   + V   
Sbjct: 354 DMEVKKARLTRLQHVINNQSMQIGRAMLGSTQRILVEGPSKLDPMQLCGRTENNRVVNFE 413

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
             +  IG    V IT+V+ ++L G+ +
Sbjct: 414 GPHTLIGGFADVEITEVRPNSLRGKFL 440


>gi|226939225|ref|YP_002794296.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Laribacter
           hongkongensis HLHK9]
 gi|226714149|gb|ACO73287.1| MiaB [Laribacter hongkongensis HLHK9]
          Length = 443

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 199/448 (44%), Positives = 290/448 (64%), Gaps = 12/448 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ ++K++GCQMN YDS +M D+   ++   + +S DDAD+I+ NTC +REKA EKV+S 
Sbjct: 2   KKLYIKTFGCQMNEYDSDKMADVLGLAEEIVKTDSPDDADIILFNTCSVREKAQEKVFSD 61

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-ER 142
           LGR+R LK +R     DL++ V GCVA  EG+ I++R+P V+VV GPQT +RLP+L+ +R
Sbjct: 62  LGRVRPLKEAR----PDLIIGVGGCVASQEGDTIVKRAPYVDVVFGPQTLHRLPQLISQR 117

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
              G   VD  +   +KF+ L        R  G  AF+++ EGC K+CTFCVVPYTRG E
Sbjct: 118 RESGAAQVDISFPEIEKFDHLPPA-----RVEGAAAFVSVMEGCSKYCTFCVVPYTRGEE 172

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR L+ V+ E   L   GV EITLLGQNVNA+RG   DGE   F+ LL  + EI G+ R
Sbjct: 173 VSRPLNDVLTEVAGLAQQGVKEITLLGQNVNAYRGAMADGEIADFACLLECVHEIPGVER 232

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHPR+ +  +I  +  L  L+ +LHLPVQSG+DR+L +M R +TA EY+ II ++
Sbjct: 233 IRFTTSHPREFTPRIIDCYARLPKLVSHLHLPVQSGADRVLAAMKRGYTALEYKSIIRKL 292

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R++RPD+ +SSDFIVGFPGETD+DF  T  LV+++ +  +F F YSPR GTP +++ +  
Sbjct: 293 RAIRPDLCLSSDFIVGFPGETDEDFEKTRKLVEELEFDASFVFIYSPRPGTPAADLPDDT 352

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSVVLN 441
              VK +RL  L + L  +    N + VG +  VL+E    ++  +L  RS   + V   
Sbjct: 353 PHEVKVKRLQTLTELLDRKTFEINQSMVGTVQTVLVEGISRRDSNELAARSANNRIVNFV 412

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELVV 469
            +   IG +++V IT+    ++ GE++ 
Sbjct: 413 GQPRLIGQMVEVVITEALRHSVRGEILT 440


>gi|229890671|sp|A4VQY3|MIAB_PSEU5 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
          Length = 437

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 206/448 (45%), Positives = 287/448 (64%), Gaps = 18/448 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ F++++GCQMN YDS RM D+    Q  E   +  +AD+I+LNTC IREKA EKV+S 
Sbjct: 3   RKLFIETHGCQMNEYDSSRMVDLLGEHQAMEITENPAEADVILLNTCSIREKAQEKVFSQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR R LK    ++   L++ V GCVA  EG  I  R+P V+VV GPQT +RLPE+++ A
Sbjct: 63  LGRWRELK----QDNPQLVIGVGGCVASQEGAAIRDRAPYVDVVFGPQTLHRLPEMIDAA 118

Query: 144 RFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           R  +   VD  +   +KF+RL        R  G +A++++ EGC K+CTFCVVPYTRG E
Sbjct: 119 RTTRTPQVDISFPEIEKFDRLP-----EPRVDGPSAYVSVMEGCSKYCTFCVVPYTRGEE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR L+ V+ E   L +NGV E+TLLGQNVN +R  G D     F+DLL++++ I G+ R
Sbjct: 174 VSRPLADVLAEIVHLAENGVKEVTLLGQNVNGYRHDGHD-----FADLLHAVAAIDGIGR 228

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +RYTTSHP + SD +I+AH D+  L+ YLHLPVQ+GSDRIL +M R HTA EY+  I R+
Sbjct: 229 IRYTTSHPLEFSDAIIQAHADIPQLVKYLHLPVQAGSDRILAAMKRNHTALEYKSRIRRL 288

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           ++  PDI ISSDFIVGFPGETD DF  TM L++ +G+  ++SF YS R GTP +++ +  
Sbjct: 289 KAAVPDILISSDFIVGFPGETDKDFEQTMKLIEDVGFDFSYSFVYSARPGTPAADLADDT 348

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLN 441
            E VK +RL  LQ+++ +Q    +   VG    +L+  +  K+ G L GR+   + V   
Sbjct: 349 PEEVKKQRLAILQQRINQQGFENSRRMVGTTQRILVSDYSKKDPGMLQGRTEHNRIVNFR 408

Query: 442 SKNHN-IGDIIKVRITDVKISTLYGELV 468
             N   IG  + V I D    +L G L+
Sbjct: 409 CDNPRLIGQFVDVHIDDALPHSLRGSLL 436


>gi|325920324|ref|ZP_08182261.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Xanthomonas gardneri ATCC
           19865]
 gi|325549186|gb|EGD20103.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Xanthomonas gardneri ATCC
           19865]
          Length = 489

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 206/463 (44%), Positives = 297/463 (64%), Gaps = 14/463 (3%)

Query: 14  VSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHI 72
           V++     +V  + ++K++GCQMN YDS +M D+   S+G E  ++ +DAD++++NTC I
Sbjct: 25  VARPAAPAVVRGKLYIKTHGCQMNEYDSAKMADVLAASEGLELTDNPEDADVVLVNTCSI 84

Query: 73  REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVV-VAGCVAQAEGEEILRRSPIVNVVVGPQ 131
           REKA EKV+S LGR R LK SR K GG  +++ V GCVA  EGE I++R+P V++V GPQ
Sbjct: 85  REKAQEKVFSQLGRWRLLKESRHKAGGTPVIIGVGGCVASQEGEAIVKRAPYVDLVFGPQ 144

Query: 132 TYYRLPELLE-RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190
           T +RLPEL+  R   GK  VD  +   +KF+RL        R  G +AF++I EGC K+C
Sbjct: 145 TLHRLPELIRARRESGKSQVDISFPEIEKFDRLP-----EPRADGPSAFVSIMEGCSKYC 199

Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT--FS 248
           +FCVVPYTRG E+SR    V+ E  +L   GV EI LLGQNVNA+RG           ++
Sbjct: 200 SFCVVPYTRGEEVSRPFEDVLVEVAQLAAQGVREINLLGQNVNAYRGAYGADAGDAAQYA 259

Query: 249 DL---LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
           DL   + ++++I G+ R+R+TTSHP + SD L+ A+ D+  L  YLHLPVQ+GSDRIL +
Sbjct: 260 DLGLLIRTIAQIDGVGRIRFTTSHPLEFSDSLVDAYRDVPQLANYLHLPVQAGSDRILSA 319

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           M R +TA E++  I ++R+VRPDI+ISSDFIVGFPGET+ DF  TM L++ +G+ Q+FSF
Sbjct: 320 MKRGYTALEFKSKIRKLRAVRPDISISSDFIVGFPGETEADFEKTMKLIEDVGFDQSFSF 379

Query: 366 KYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KE 424
            YS R GTP S++ +   + VK  RL  LQ ++       + + VG +  VL+E    ++
Sbjct: 380 IYSRRPGTPASDLQDDTPDAVKQARLARLQAQINAHATRISQSMVGSVQRVLVEGPSRRD 439

Query: 425 KGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
             +L G+S  ++ V        IG  + V IT+   ++L G +
Sbjct: 440 PNELTGKSENMRPVNFPGNARLIGQFVDVVITEAMSNSLRGRI 482


>gi|254496551|ref|ZP_05109420.1| hypothetical protein LDG_0201 [Legionella drancourtii LLAP12]
 gi|254354230|gb|EET12896.1| hypothetical protein LDG_0201 [Legionella drancourtii LLAP12]
          Length = 447

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 201/447 (44%), Positives = 290/447 (64%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ ++K+ GCQMN YDS +M ++   S G  + + +++AD+I+LNTC IREKA EKV+S 
Sbjct: 3   KKLYIKTNGCQMNEYDSSKMAEVLLESHGLVKTDQVEEADVILLNTCSIREKAQEKVFSQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-ER 142
           LG+ R  K     +   +++ V GCVA  EG +I++R+P V++V GPQT +RLP +L ER
Sbjct: 63  LGQWREYK----AKNPHVVIGVGGCVASQEGADIVKRAPFVDLVFGPQTLHRLPAMLNER 118

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
               K VVD  +   +KF+ L        R  G TAF++I EGC K+C+FCVVPYTRG E
Sbjct: 119 IEKKKAVVDISFPEIEKFDHLPA-----PRAEGPTAFVSIMEGCSKYCSFCVVPYTRGEE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           ISR    V+ E   L   GV EI LLGQNVN +RGK  +G+    + L++ ++ ++G+ R
Sbjct: 174 ISRPFDDVLAECYHLATQGVREINLLGQNVNDYRGKMENGDIADLALLIHYIAALEGIGR 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP   SD LI A+ ++  L  +LHLPVQSGSDRIL  M R +TA E++  I ++
Sbjct: 234 IRFTTSHPLAFSDNLINAYAEVPELANHLHLPVQSGSDRILGLMKRGYTALEFKSKIRKL 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R VRPDI +S+D IVGFPGETD DF+ATMDLV +IG+  +FSF YSPR GTP +N++++ 
Sbjct: 294 RKVRPDIRLSTDIIVGFPGETDKDFQATMDLVHEIGFDTSFSFIYSPRPGTPAANLVDET 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLVGRSPWLQSVVLN 441
              VK +RL  LQ +L  Q   ++ + +G    +L+  H K+   +L GR+   + V  +
Sbjct: 354 PLEVKKQRLQILQSRLLLQASRYSQSMIGSTQRILVTGHSKKDSQQLSGRTECNRVVNFD 413

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
           +  H IG  ++V+I D   ++L G LV
Sbjct: 414 APPHLIGQFVEVQINDALPNSLRGRLV 440


>gi|238755076|ref|ZP_04616424.1| hypothetical protein yruck0001_21560 [Yersinia ruckeri ATCC 29473]
 gi|238706780|gb|EEP99149.1| hypothetical protein yruck0001_21560 [Yersinia ruckeri ATCC 29473]
          Length = 474

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 202/448 (45%), Positives = 291/448 (64%), Gaps = 14/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS +M D+  S  GYE  +  ++ADL++LNTC IREKA EKV++ 
Sbjct: 3   KKLHIKTWGCQMNEYDSSKMADLLASTHGYELTDVPEEADLLLLNTCSIREKAQEKVFAL 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK +  +    L++ V GCVA  EG+ I +R+P V+V+ GPQT +RLPE+L   
Sbjct: 63  LGRWKQLKATNPQ----LVIGVGGCVASQEGDHIRQRAPCVDVIFGPQTLHRLPEMLNHV 118

Query: 144 RFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
             G    +VD  +   +KF+RL        R  G TAF++I EGC+K+CTFCVVPYTRG 
Sbjct: 119 -LGTHSPIVDISFPEIEKFDRLP-----EPRADGPTAFVSIMEGCNKYCTFCVVPYTRGE 172

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E+SR +  V+ E  +L   GV E+ LLGQNVNA+RG   DG+ C F++LL  ++ I G+ 
Sbjct: 173 EVSRPVDDVLFEIAQLAAQGVREVNLLGQNVNAYRGATYDGDICRFAELLRLVAAIDGID 232

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHP + +D +I  + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II +
Sbjct: 233 RIRFTTSHPIEFTDDIIAVYEDTPELVSFLHLPVQSGSDRILTMMKRAHTALEYKSIIRK 292

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R  RP+I ISSDFIVGFPGE+  DF  TM LV ++ +  ++SF YS R GTP +++ + 
Sbjct: 293 LRKARPNIHISSDFIVGFPGESQADFEQTMTLVAEVNFDMSYSFIYSSRPGTPAADLPDD 352

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVL 440
           V ++ K +RL  LQ+++ +Q ++++ A VG +  VL+E    K+  +L GR+   + V  
Sbjct: 353 VSDDEKKQRLHALQERITQQAMNYSRAMVGTVQRVLVEGTSRKDVMELAGRTENNRIVNF 412

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 IG  + V I DV  ++L G +V
Sbjct: 413 VGTPEMIGTFVDVNIVDVYTNSLRGVVV 440


>gi|319764320|ref|YP_004128257.1| tRNA-i(6)a37 thiotransferase enzyme miab [Alicycliphilus
           denitrificans BC]
 gi|330826382|ref|YP_004389685.1| MiaB family RNA modification protein [Alicycliphilus denitrificans
           K601]
 gi|317118881|gb|ADV01370.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Alicycliphilus
           denitrificans BC]
 gi|329311754|gb|AEB86169.1| RNA modification enzyme, MiaB family [Alicycliphilus denitrificans
           K601]
          Length = 449

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 200/449 (44%), Positives = 291/449 (64%), Gaps = 15/449 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ F+K++GCQMN YDS +M D+   +Q Y+  ++ ++ADLI+ NTC +REKA EKV+S 
Sbjct: 3   KKVFIKTFGCQMNEYDSAKMADVLGAAQDYQSTDNPEEADLILFNTCSVREKAQEKVFSD 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE-R 142
           LGR+++LK   +      L+ V GCVA  EGEEI++R+P V+VV GPQT +RLPELL  R
Sbjct: 63  LGRVKHLKEKGV------LIGVGGCVASQEGEEIIKRAPFVDVVFGPQTLHRLPELLSAR 116

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            +  K  VD  +   +KF+ L        R  G +AF++I EGC K+C++CVVPYTRG E
Sbjct: 117 EKQHKPQVDISFPEIEKFDHLPPA-----RVEGASAFVSIMEGCSKYCSYCVVPYTRGEE 171

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-GLDGEKCTFSDLLYSLSEIKGLV 261
           +SR    V+ E   L D GV E+TLLGQNVNA+ G  G   EK  F+ LL  ++EI G+ 
Sbjct: 172 VSRPFEDVLVEVAGLADQGVKEVTLLGQNVNAYLGTMGDTAEKADFALLLEYVAEIPGIE 231

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+RYTTSHP + +  LI+A+  +  L+ +LHLPVQ GSDRIL +M R +TA EY+  + +
Sbjct: 232 RIRYTTSHPNEFTPRLIEAYARIPKLVSHLHLPVQHGSDRILMAMKRGYTAMEYKSTVRK 291

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           ++++RP +A+SSDFIVGFPGET++DF+  M L+  + +  +FSF +SPR GTP +N+ + 
Sbjct: 292 LKAIRPGMAMSSDFIVGFPGETEEDFQKMMKLIHDVRFDNSFSFIFSPRPGTPAANLHDD 351

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVL 440
              +VK  RL  LQ  +    +  +   VG +  +L+E   K + G+L+GR+   + V  
Sbjct: 352 TPHDVKLRRLQELQAVINRNILEISQERVGTVQRLLVEGVSKRDAGELMGRTECNRVVNF 411

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELVV 469
             +   IG +I VRIT+ +  TL GE+  
Sbjct: 412 PGRERLIGQMIDVRITEARTYTLRGEVAT 440


>gi|170767811|ref|ZP_02902264.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia albertii
           TW07627]
 gi|170123299|gb|EDS92230.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia albertii
           TW07627]
          Length = 474

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 199/448 (44%), Positives = 293/448 (65%), Gaps = 14/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS +M D+   + GY+  +  ++AD+++LNTC IREKA EKV+  
Sbjct: 3   KKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTDVAEEADVLLLNTCSIREKAQEKVFHQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK    ++  DL++ V GCVA  EG+ I +R+  V+++ GPQT +RLPE++   
Sbjct: 63  LGRWKLLK----EKNPDLIIGVGGCVASQEGDHIRQRAHYVDIIFGPQTLHRLPEMINSV 118

Query: 144 RFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           R G R  VVD  +   +KF+RL        R  G TAF++I EGC+K+CT+CVVPYTRG 
Sbjct: 119 R-GDRSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTYCVVPYTRGE 172

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E+SR    ++ E  +L   GV E+ LLGQNVNAWRG+  DG   TF+DLL  ++ I G+ 
Sbjct: 173 EVSRPSDDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTTGTFADLLRLVAAIDGID 232

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHP + +D +I+ + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II +
Sbjct: 233 RIRFTTSHPIEFTDDIIEVYRDTPELVSFLHLPVQSGSDRILNLMGRTHTALEYKAIIRK 292

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R+ RPDI ISSDFIVGFPGET +DF  TM L+  + +  ++SF +S R GTP ++M++ 
Sbjct: 293 LRAARPDIQISSDFIVGFPGETTEDFEKTMKLITDVNFDMSYSFIFSARPGTPAADMVDD 352

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVL 440
           V E  K +RL  LQ+++ +Q ++++   +G    +L+E   ++   +L GR+   + V  
Sbjct: 353 VSEEEKKQRLYILQERINQQAMAWSRRMLGTTQRILVEGTSRKNIMELSGRTENNRVVNF 412

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 IG  + V ITDV  ++L G++V
Sbjct: 413 EGTPDMIGKFVDVEITDVYPNSLRGKVV 440


>gi|332160874|ref|YP_004297451.1| putative tRNA-thiotransferase [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325665104|gb|ADZ41748.1| putative tRNA-thiotransferase [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330861444|emb|CBX71668.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Yersinia
           enterocolitica W22703]
          Length = 474

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 200/447 (44%), Positives = 285/447 (63%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS +M D+  S  GY+     ++ADL++LNTC IREKA EKV+S 
Sbjct: 3   KKLHIKTWGCQMNEYDSSKMADLLASTHGYQLTEIPEEADLLLLNTCSIREKAQEKVFSL 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LG  + LK    ++   +++ V GCVA  EGE + +R+P V+V+ GPQT +RLPE++   
Sbjct: 63  LGHWKLLK----EKNPGIIIGVGGCVASQEGEHLRQRAPCVDVIFGPQTLHRLPEMINHV 118

Query: 144 R-FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           +     VVD  +   +KF+RL        R  G TAF++I EGC+K+CTFCVVPYTRG E
Sbjct: 119 QGTHSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTFCVVPYTRGEE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR    ++ E  +L   GV E+ LLGQNVNA+RG   DG+ C+F+DLL  ++ I G+ R
Sbjct: 174 VSRPSDDILFEIAQLAAQGVREVNLLGQNVNAYRGATYDGDICSFADLLRLVAAIDGIDR 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP + +D +I  + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II ++
Sbjct: 234 VRFTTSHPIEFTDDIIDVYRDTPELVSFLHLPVQSGSDRILTMMKRAHTALEYKAIIRKL 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R  RPDI ISSDFI+GFPGET  DF  TM LV  + +  ++SF YSPR GTP +++ + V
Sbjct: 294 RQARPDIQISSDFIIGFPGETQQDFEQTMKLVADVRFDTSYSFIYSPRPGTPAADLPDDV 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441
            E  K +RL  LQ+++ +Q +  +   VG +  +L+E   ++   +L GR+   + V   
Sbjct: 354 SEEEKKQRLHILQQRITQQAMEISREMVGTVQRILVEGTSRKNVMELAGRTENNRVVNFE 413

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                IG  + V I DV  S+L G L+
Sbjct: 414 GTPEMIGKFVDVEIVDVYASSLRGILL 440


>gi|74311197|ref|YP_309616.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Shigella
           sonnei Ss046]
 gi|82543105|ref|YP_407052.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Shigella
           boydii Sb227]
 gi|123742024|sp|Q324N4|MIAB_SHIBS RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|123746029|sp|Q3Z4D1|MIAB_SHISS RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|73854674|gb|AAZ87381.1| conserved hypothetical protein [Shigella sonnei Ss046]
 gi|81244516|gb|ABB65224.1| conserved hypothetical protein [Shigella boydii Sb227]
 gi|320174711|gb|EFW49843.1| tRNA-i(6)A37 methylthiotransferase [Shigella dysenteriae CDC
           74-1112]
 gi|323163924|gb|EFZ49733.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Shigella sonnei 53G]
 gi|332097757|gb|EGJ02731.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Shigella boydii 3594-74]
          Length = 474

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 199/448 (44%), Positives = 293/448 (65%), Gaps = 14/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS +M D+   + GY+  +  ++AD+++LNTC IREKA EKV+  
Sbjct: 3   KKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTDVAEEADVLLLNTCSIREKAQEKVFHQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK    ++  DL++ V GCVA  EGE I +R+  V+++ GPQT +RLPE++   
Sbjct: 63  LGRWKLLK----EKNPDLIIGVGGCVASQEGEHIRQRAHYVDIIFGPQTLHRLPEMINSV 118

Query: 144 RFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           R G R  VVD  +   +KF+RL        R  G TAF++I EGC+K+CT+CVVPYTRG 
Sbjct: 119 R-GDRSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTYCVVPYTRGE 172

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E+SR    ++ E  +L   GV E+ LLGQNVNAWRG+  DG   +F+DLL  ++ I G+ 
Sbjct: 173 EVSRPSDDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGSTGSFADLLRLVAAIDGID 232

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHP + +D +I+ + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II +
Sbjct: 233 RIRFTTSHPIEFTDDIIEVYRDTPELVSFLHLPVQSGSDRILNLMGRTHTALEYKAIIRK 292

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R+ RPDI ISSDFIVGFPGET +DF  TM L+  + +  ++SF +S R GTP ++M++ 
Sbjct: 293 LRAARPDIQISSDFIVGFPGETTEDFEKTMKLIADVNFDMSYSFIFSARPGTPAADMVDD 352

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVL 440
           V E  K +RL  LQ+++ +Q ++++   +G    +L+E   ++   +L GR+   + V  
Sbjct: 353 VPEEEKKQRLYILQERINQQAMAWSRRMLGTTQRILVEGTSRKSIMELSGRTENNRVVNF 412

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 IG  + V ITDV  ++L G++V
Sbjct: 413 EGTPDMIGKFVDVEITDVYPNSLRGKVV 440


>gi|191168679|ref|ZP_03030459.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli B7A]
 gi|309795469|ref|ZP_07689886.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli MS
           145-7]
 gi|190901271|gb|EDV61040.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli B7A]
 gi|308120844|gb|EFO58106.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli MS
           145-7]
          Length = 474

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 197/447 (44%), Positives = 292/447 (65%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS +M D+   + GY+  +  ++AD+++LNTC IREKA EKV+  
Sbjct: 3   KKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTDVAEEADVLLLNTCSIREKAQEKVFHQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK    ++  DL++ V GCVA  EGE I +R+  V+++ GPQT +RLPE++   
Sbjct: 63  LGRWKLLK----EKNPDLIIGVGGCVASQEGEHIRQRAHYVDIIFGPQTLHRLPEMINSV 118

Query: 144 R-FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           R +   VVD  +   +KF+RL        R  G TAF++I EGC+K+CT+CVVPYTRG E
Sbjct: 119 RGYRSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTYCVVPYTRGEE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR    ++ E  +L   GV E+ LLGQNVNAWRG+  DG   +F+DLL  ++ I G+ R
Sbjct: 174 VSRPSDDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTTGSFADLLRLVAAIDGIDR 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP + +D +I+ + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II ++
Sbjct: 234 IRFTTSHPIEFTDDIIEVYRDTPELVSFLHLPVQSGSDRILNLMGRTHTALEYKAIIRKL 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+ RPDI ISSDFIVGFPGET +DF  TM L+  + +  ++SF +S R GTP ++M++ V
Sbjct: 294 RAARPDIQISSDFIVGFPGETTEDFEKTMKLIADVNFDMSYSFIFSARPGTPAADMVDDV 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441
            E  K +RL  LQ+++ +Q ++++   +G    +L+E   ++   +L GR+   + V   
Sbjct: 354 PEEEKKQRLYILQERINQQAMAWSRRMLGTTQRILVEGTSRKSIMELSGRTENNRVVNFE 413

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                IG  + V ITDV  ++L G++V
Sbjct: 414 GTPDMIGKFVDVEITDVYPNSLRGKVV 440


>gi|320178452|gb|EFW53420.1| tRNA-i(6)A37 methylthiotransferase [Shigella boydii ATCC 9905]
          Length = 474

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 199/448 (44%), Positives = 293/448 (65%), Gaps = 14/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS +M D+   + GY+  +  ++AD+++LNTC IREKA EKV+  
Sbjct: 3   KKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTDVAEEADVLLLNTCSIREKAQEKVFHQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK    ++  DL++ V GCVA  EGE I +R+  V+++ GPQT +RLPE++   
Sbjct: 63  LGRWKLLK----EKNPDLIIGVGGCVASQEGEHIRQRAHYVDIIFGPQTLHRLPEMINSV 118

Query: 144 RFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           R G R  VVD  +   +KF+RL        R  G TAF++I EGC+K+CT+CVVPYTRG 
Sbjct: 119 R-GDRSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTYCVVPYTRGE 172

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E+SR    ++ E  +L   GV E+ LLGQNVNAWRG+  DG   +F+DLL  ++ I G+ 
Sbjct: 173 EVSRPSDDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTTGSFADLLRLVAAIDGID 232

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHP + +D +I+ + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II +
Sbjct: 233 RIRFTTSHPIEFTDDIIEVYRDTPELVSFLHLPVQSGSDRILNLMGRTHTALEYKAIIRK 292

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R+ RPDI ISSDFIVGFPGET +DF  TM L+  + +  ++SF +S R GTP ++M++ 
Sbjct: 293 LRAARPDIQISSDFIVGFPGETTEDFEKTMKLIADVNFDMSYSFIFSARPGTPAADMVDD 352

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVL 440
           V E  K +RL  LQ+++ +Q ++++   +G    +L+E   ++   +L GR+   + V  
Sbjct: 353 VPEEEKKQRLYILQERINQQAMAWSRRMLGTTQRILVEGTSRKSIMELSGRTENNRVVNF 412

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 IG  + V ITDV  ++L G++V
Sbjct: 413 EGTPDMIGKFVDVEITDVYPNSLRGKVV 440


>gi|269102017|ref|ZP_06154714.1| tRNA-i(6)A37 methylthiotransferase [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268161915|gb|EEZ40411.1| tRNA-i(6)A37 methylthiotransferase [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 474

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 203/447 (45%), Positives = 292/447 (65%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS +M D+   + G+E     ++AD+++LNTC IREKA EKV+  
Sbjct: 3   KKLLIKTWGCQMNEYDSSKMADLLNAANGFELTEDPEEADVLLLNTCSIREKAQEKVFHQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK+   K+ G L++ V GCVA  EG+ I +R+P V+V+ GPQT +RLPE+++++
Sbjct: 63  LGRWKTLKD---KKPG-LVIGVGGCVATQEGDSIRQRAPYVDVIFGPQTLHRLPEMIKQS 118

Query: 144 RFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           +  +  V+D  +   +KF+ L        R  G TAF++I EGC K+CT+CVVPYTRG E
Sbjct: 119 QSTEAPVMDISFPEIEKFDSLP-----EPRAEGPTAFVSIMEGCSKYCTYCVVPYTRGEE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR L  V+ E  +L   GV E+ LLGQNVNA+RG   DGE  TF++LL  ++ I G+ R
Sbjct: 174 VSRPLDDVLFEIAQLAAQGVREVNLLGQNVNAYRGATYDGEIATFAELLRLVAAIDGIDR 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +RYTTSHP + +D +I+ + D   L+ +LHLPVQSGSDRIL  M R HTA EY+  I ++
Sbjct: 234 IRYTTSHPIEFTDDIIEVYQDTPELVSFLHLPVQSGSDRILTMMKRPHTAIEYKSKIRKL 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R  RPDI ISSDFIVGFPGE+D DF+ TM L+  + +  +FSF +SPR GTP ++    +
Sbjct: 294 RKARPDITISSDFIVGFPGESDQDFQDTMKLIRDVDFDMSFSFIFSPRPGTPAADYPCDL 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441
            E VK ERL  LQ+++  Q + F+   +G    +L+E   K+   +L GR+   + V   
Sbjct: 354 TEEVKKERLYELQQQINSQAMRFSRQMLGTEQRILVEGPSKKNVMELRGRTENNRVVNFE 413

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                IG  + V+ITDV  ++L GEL+
Sbjct: 414 GSADLIGQFVDVKITDVFANSLRGELI 440


>gi|332281803|ref|ZP_08394216.1| MiaB protein [Shigella sp. D9]
 gi|332104155|gb|EGJ07501.1| MiaB protein [Shigella sp. D9]
          Length = 486

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 199/448 (44%), Positives = 293/448 (65%), Gaps = 14/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS +M D+   + GY+  +  ++AD+++LNTC IREKA EKV+  
Sbjct: 15  KKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTDVAEEADVLLLNTCSIREKAQEKVFHQ 74

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK    ++  DL++ V GCVA  EGE I +R+  V+++ GPQT +RLPE++   
Sbjct: 75  LGRWKLLK----EKNPDLIIGVGGCVASQEGEHIRQRAHYVDIIFGPQTLHRLPEMINSV 130

Query: 144 RFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           R G R  VVD  +   +KF+RL        R  G TAF++I EGC+K+CT+CVVPYTRG 
Sbjct: 131 R-GDRSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTYCVVPYTRGE 184

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E+SR    ++ E  +L   GV E+ LLGQNVNAWRG+  DG   +F+DLL  ++ I G+ 
Sbjct: 185 EVSRPSDDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTTGSFADLLRLVAAIDGID 244

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHP + +D +I+ + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II +
Sbjct: 245 RIRFTTSHPIEFTDDIIEVYRDTPELVSFLHLPVQSGSDRILNLMGRTHTALEYKAIIRK 304

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R+ RPDI ISSDFIVGFPGET +DF  TM L+  + +  ++SF +S R GTP ++M++ 
Sbjct: 305 LRAARPDIQISSDFIVGFPGETTEDFEKTMKLIADVNFDMSYSFIFSARPGTPAADMVDD 364

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVL 440
           V E  K +RL  LQ+++ +Q ++++   +G    +L+E   ++   +L GR+   + V  
Sbjct: 365 VPEEEKKQRLYILQERINQQAMAWSRRMLGTTQRILVEGTSRKSIMELSGRTENNRVVNF 424

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 IG  + V ITDV  ++L G++V
Sbjct: 425 EGTPDMIGKFVDVEITDVYPNSLRGKVV 452


>gi|238791657|ref|ZP_04635295.1| hypothetical protein yinte0001_28150 [Yersinia intermedia ATCC
           29909]
 gi|238729273|gb|EEQ20789.1| hypothetical protein yinte0001_28150 [Yersinia intermedia ATCC
           29909]
          Length = 474

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 200/446 (44%), Positives = 283/446 (63%), Gaps = 12/446 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS +M D+  S  GY+     ++ADL++LNTC IREKA EKV+S 
Sbjct: 3   KKLHIKTWGCQMNEYDSSKMADLLASTHGYQLTEIPEEADLLLLNTCSIREKAQEKVFSL 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LG  + LK     +  +L++ V GCVA  EGE + +R+P V+V+ GPQT +RLPE++   
Sbjct: 63  LGHWKLLK----AKNPNLIIGVGGCVASQEGEHLRQRAPCVDVIFGPQTLHRLPEMINHV 118

Query: 144 RFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           +     VVD  +   +KF+RL        R  G TAF++I EGC+K+CTFCVVPYTRG E
Sbjct: 119 QGSHSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTFCVVPYTRGEE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           ISR    ++ E  +L   GV E+ LLGQNVNA+RG   DG+ C+F++LL  ++ I G+ R
Sbjct: 174 ISRPSDDILFEIAQLASQGVREVNLLGQNVNAYRGATYDGDICSFAELLRLVAAIDGIDR 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP + +D +I  + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II ++
Sbjct: 234 IRFTTSHPIEFTDDIIDVYRDTPELVSFLHLPVQSGSDRILTMMKRAHTALEYKSIIRKL 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R  RPDI ISSDFI+GFPGET  DF  T+ LV  I +  ++SF YSPR GTP +++ + V
Sbjct: 294 RQARPDIQISSDFIIGFPGETQQDFEQTIKLVADIHFDTSYSFIYSPRPGTPAADLPDDV 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLVGRSPWLQSVVLN 441
            E  K +RL  LQ+++ +Q +  +   VG +  +L+E   ++   +L GR+   + V   
Sbjct: 354 SEEEKKQRLHILQQRITQQAMEISREMVGSVQRILVEGTSRKSAVELAGRTENNRVVNFE 413

Query: 442 SKNHNIGDIIKVRITDVKISTLYGEL 467
                IG  + V I  V  S+L G L
Sbjct: 414 GTPEMIGKFVDVEIVGVYASSLRGIL 439


>gi|15829953|ref|NP_308726.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Escherichia
           coli O157:H7 str. Sakai]
 gi|16128644|ref|NP_415194.1| tRNA-i(6)A37 methylthiotransferase [Escherichia coli str. K-12
           substr. MG1655]
 gi|26246637|ref|NP_752677.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Escherichia
           coli CFT073]
 gi|82775938|ref|YP_402285.1| hypothetical protein SDY_0597 [Shigella dysenteriae Sd197]
 gi|89107530|ref|AP_001310.1| isopentenyl-adenosine A37 tRNA methylthiolase [Escherichia coli
           str. K-12 substr. W3110]
 gi|110640883|ref|YP_668611.1| MiaB protein [Escherichia coli 536]
 gi|157157673|ref|YP_001461833.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli E24377A]
 gi|157160149|ref|YP_001457467.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli HS]
 gi|168752231|ref|ZP_02777253.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli O157:H7
           str. EC4113]
 gi|168758304|ref|ZP_02783311.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli O157:H7
           str. EC4401]
 gi|168764662|ref|ZP_02789669.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli O157:H7
           str. EC4501]
 gi|168767108|ref|ZP_02792115.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli O157:H7
           str. EC4486]
 gi|168777598|ref|ZP_02802605.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli O157:H7
           str. EC4196]
 gi|168779152|ref|ZP_02804159.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli O157:H7
           str. EC4076]
 gi|168786511|ref|ZP_02811518.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli O157:H7
           str. EC869]
 gi|168802429|ref|ZP_02827436.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli O157:H7
           str. EC508]
 gi|170020982|ref|YP_001725936.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli ATCC
           8739]
 gi|170080341|ref|YP_001729661.1| isopentenyl-adenosine A37 tRNA methylthiolase [Escherichia coli
           str. K-12 substr. DH10B]
 gi|170679912|ref|YP_001742780.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Escherichia
           coli SMS-3-5]
 gi|188492519|ref|ZP_02999789.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli 53638]
 gi|191173977|ref|ZP_03035495.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli F11]
 gi|193063365|ref|ZP_03044455.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli E22]
 gi|193069098|ref|ZP_03050056.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli E110019]
 gi|194429753|ref|ZP_03062269.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli B171]
 gi|194434466|ref|ZP_03066727.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Shigella dysenteriae
           1012]
 gi|194439882|ref|ZP_03071945.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli 101-1]
 gi|195939398|ref|ZP_03084780.1| isopentenyl-adenosine A37 tRNA methylthiolase [Escherichia coli
           O157:H7 str. EC4024]
 gi|208808891|ref|ZP_03251228.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli O157:H7
           str. EC4206]
 gi|208814878|ref|ZP_03256057.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli O157:H7
           str. EC4045]
 gi|208823289|ref|ZP_03263607.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli O157:H7
           str. EC4042]
 gi|209395752|ref|YP_002269297.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli O157:H7
           str. EC4115]
 gi|217324477|ref|ZP_03440561.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli O157:H7
           str. TW14588]
 gi|218549762|ref|YP_002383553.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Escherichia
           fergusonii ATCC 35469]
 gi|218553203|ref|YP_002386116.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Escherichia
           coli IAI1]
 gi|218694100|ref|YP_002401767.1| isopentenyl-adenosine A37 tRNA methylthiolase [Escherichia coli
           55989]
 gi|218699025|ref|YP_002406654.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Escherichia
           coli IAI39]
 gi|218703994|ref|YP_002411513.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Escherichia
           coli UMN026]
 gi|227884364|ref|ZP_04002169.1| 2-methylthioadenine synthase [Escherichia coli 83972]
 gi|238899938|ref|YP_002925734.1| isopentenyl-adenosine A37 tRNA methylthiolase [Escherichia coli
           BW2952]
 gi|253774355|ref|YP_003037186.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Escherichia
           coli 'BL21-Gold(DE3)pLysS AG']
 gi|254160740|ref|YP_003043848.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Escherichia
           coli B str. REL606]
 gi|254791824|ref|YP_003076661.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Escherichia
           coli O157:H7 str. TW14359]
 gi|256020613|ref|ZP_05434478.1| isopentenyl-adenosine A37 tRNA methylthiolase [Shigella sp. D9]
 gi|256023728|ref|ZP_05437593.1| isopentenyl-adenosine A37 tRNA methylthiolase [Escherichia sp.
           4_1_40B]
 gi|260842887|ref|YP_003220665.1| isopentenyl-adenosine A37 tRNA methylthiolase [Escherichia coli
           O103:H2 str. 12009]
 gi|260853912|ref|YP_003227803.1| isopentenyl-adenosine A37 tRNA methylthiolase [Escherichia coli
           O26:H11 str. 11368]
 gi|260866809|ref|YP_003233211.1| isopentenyl-adenosine A37 tRNA methylthiolase [Escherichia coli
           O111:H- str. 11128]
 gi|261224129|ref|ZP_05938410.1| isopentenyl-adenosine A37 tRNA methylthiolase [Escherichia coli
           O157:H7 str. FRIK2000]
 gi|261257823|ref|ZP_05950356.1| isopentenyl-adenosine A37 tRNA methylthiolase [Escherichia coli
           O157:H7 str. FRIK966]
 gi|291281610|ref|YP_003498428.1| hypothetical protein G2583_0824 [Escherichia coli O55:H7 str.
           CB9615]
 gi|293403922|ref|ZP_06647916.1| RNA modification enzyme [Escherichia coli FVEC1412]
 gi|293413956|ref|ZP_06656605.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli B185]
 gi|293418774|ref|ZP_06661209.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli B088]
 gi|298379697|ref|ZP_06989302.1| Dimethylallyl adenosine tRNA methylthiotransferase miaB
           [Escherichia coli FVEC1302]
 gi|300817816|ref|ZP_07098030.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli MS
           107-1]
 gi|300823020|ref|ZP_07103154.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli MS
           119-7]
 gi|300901175|ref|ZP_07119279.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli MS
           198-1]
 gi|300907841|ref|ZP_07125457.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli MS 84-1]
 gi|300931599|ref|ZP_07146911.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli MS
           187-1]
 gi|300937869|ref|ZP_07152662.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli MS 21-1]
 gi|300951164|ref|ZP_07165027.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli MS
           116-1]
 gi|300959238|ref|ZP_07171313.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli MS
           175-1]
 gi|300989977|ref|ZP_07179053.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli MS 45-1]
 gi|300996640|ref|ZP_07181498.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli MS
           200-1]
 gi|301025204|ref|ZP_07188775.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli MS 69-1]
 gi|301028854|ref|ZP_07192030.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli MS
           196-1]
 gi|301049854|ref|ZP_07196792.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli MS
           185-1]
 gi|301302146|ref|ZP_07208279.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli MS
           124-1]
 gi|301643922|ref|ZP_07243949.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli MS
           146-1]
 gi|307137277|ref|ZP_07496633.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Escherichia
           coli H736]
 gi|307312622|ref|ZP_07592254.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli W]
 gi|309786323|ref|ZP_07680949.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Shigella dysenteriae
           1617]
 gi|312970738|ref|ZP_07784919.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli 1827-70]
 gi|331641164|ref|ZP_08342299.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli H736]
 gi|331651675|ref|ZP_08352694.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli M718]
 gi|331662028|ref|ZP_08362951.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli TA143]
 gi|331667016|ref|ZP_08367890.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli TA271]
 gi|331672195|ref|ZP_08372987.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli TA280]
 gi|331676323|ref|ZP_08377035.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli H591]
 gi|331682080|ref|ZP_08382704.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli H299]
 gi|83288201|sp|P0AEI3|MIAB_ECO57 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|83288202|sp|P0AEI2|MIAB_ECOL6 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|83288203|sp|P0AEI1|MIAB_ECOLI RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|123049384|sp|Q0TK19|MIAB_ECOL5 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|123742173|sp|Q32IR1|MIAB_SHIDS RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|229890518|sp|A7ZJ54|MIAB_ECO24 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|229890520|sp|B7L9K8|MIAB_ECO55 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|229890521|sp|B5YQL3|MIAB_ECO5E RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|229890522|sp|B7NM12|MIAB_ECO7I RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|229890524|sp|B7M5I8|MIAB_ECO8A RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|229890525|sp|B1X656|MIAB_ECODH RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|229890526|sp|A7ZXT0|MIAB_ECOHS RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|229890528|sp|B1IYE7|MIAB_ECOLC RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|229890529|sp|B7N9R6|MIAB_ECOLU RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|229890531|sp|B1LLB3|MIAB_ECOSM RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|229890532|sp|B7LKU3|MIAB_ESCF3 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|26107036|gb|AAN79220.1|AE016757_124 Hypothetical protein yleA [Escherichia coli CFT073]
 gi|1778580|gb|AAB40863.1| HI0019 homolog [Escherichia coli]
 gi|1786882|gb|AAC73762.1| tRNA-i(6)A37 methylthiotransferase [Escherichia coli str. K-12
           substr. MG1655]
 gi|13360157|dbj|BAB34122.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
 gi|81240086|gb|ABB60796.1| conserved hypothetical protein [Shigella dysenteriae Sd197]
 gi|85674736|dbj|BAE76357.1| isopentenyl-adenosine A37 tRNA methylthiolase [Escherichia coli
           str. K12 substr. W3110]
 gi|110342475|gb|ABG68712.1| MiaB protein [Escherichia coli 536]
 gi|157065829|gb|ABV05084.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli HS]
 gi|157079703|gb|ABV19411.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli E24377A]
 gi|169755910|gb|ACA78609.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli ATCC
           8739]
 gi|169888176|gb|ACB01883.1| isopentenyl-adenosine A37 tRNA methylthiolase [Escherichia coli
           str. K-12 substr. DH10B]
 gi|170517630|gb|ACB15808.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli SMS-3-5]
 gi|187767200|gb|EDU31044.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli O157:H7
           str. EC4196]
 gi|188013873|gb|EDU51995.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli O157:H7
           str. EC4113]
 gi|188487718|gb|EDU62821.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli 53638]
 gi|189002755|gb|EDU71741.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli O157:H7
           str. EC4076]
 gi|189354844|gb|EDU73263.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli O157:H7
           str. EC4401]
 gi|189363501|gb|EDU81920.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli O157:H7
           str. EC4486]
 gi|189365364|gb|EDU83780.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli O157:H7
           str. EC4501]
 gi|189373737|gb|EDU92153.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli O157:H7
           str. EC869]
 gi|189375569|gb|EDU93985.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli O157:H7
           str. EC508]
 gi|190905753|gb|EDV65374.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli F11]
 gi|192930949|gb|EDV83553.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli E22]
 gi|192957642|gb|EDV88087.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli E110019]
 gi|194412234|gb|EDX28540.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli B171]
 gi|194417317|gb|EDX33425.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Shigella dysenteriae
           1012]
 gi|194421176|gb|EDX37200.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli 101-1]
 gi|208728692|gb|EDZ78293.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli O157:H7
           str. EC4206]
 gi|208731526|gb|EDZ80214.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli O157:H7
           str. EC4045]
 gi|208737482|gb|EDZ85166.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli O157:H7
           str. EC4042]
 gi|209157152|gb|ACI34585.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli O157:H7
           str. EC4115]
 gi|209776858|gb|ACI86741.1| hypothetical protein ECs0699 [Escherichia coli]
 gi|209776860|gb|ACI86742.1| hypothetical protein ECs0699 [Escherichia coli]
 gi|209776862|gb|ACI86743.1| hypothetical protein ECs0699 [Escherichia coli]
 gi|209776864|gb|ACI86744.1| hypothetical protein ECs0699 [Escherichia coli]
 gi|209776866|gb|ACI86745.1| hypothetical protein ECs0699 [Escherichia coli]
 gi|217320698|gb|EEC29122.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli O157:H7
           str. TW14588]
 gi|218350832|emb|CAU96528.1| isopentenyl-adenosine A37 tRNA methylthiolase [Escherichia coli
           55989]
 gi|218357303|emb|CAQ89938.1| isopentenyl-adenosine A37 tRNA methylthiolase [Escherichia
           fergusonii ATCC 35469]
 gi|218359971|emb|CAQ97515.1| isopentenyl-adenosine A37 tRNA methylthiolase [Escherichia coli
           IAI1]
 gi|218369011|emb|CAR16765.1| isopentenyl-adenosine A37 tRNA methylthiolase [Escherichia coli
           IAI39]
 gi|218431091|emb|CAR11967.1| isopentenyl-adenosine A37 tRNA methylthiolase [Escherichia coli
           UMN026]
 gi|227838450|gb|EEJ48916.1| 2-methylthioadenine synthase [Escherichia coli 83972]
 gi|238861566|gb|ACR63564.1| isopentenyl-adenosine A37 tRNA methylthiolase [Escherichia coli
           BW2952]
 gi|242376435|emb|CAQ31137.1| isopentenyl-adenosine A37 tRNA methylthiolase MiaB [Escherichia
           coli BL21(DE3)]
 gi|253325399|gb|ACT30001.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253972641|gb|ACT38312.1| isopentenyl-adenosine A37 tRNA methylthiolase [Escherichia coli B
           str. REL606]
 gi|253976835|gb|ACT42505.1| isopentenyl-adenosine A37 tRNA methylthiolase [Escherichia coli
           BL21(DE3)]
 gi|254591224|gb|ACT70585.1| isopentenyl-adenosine A37 tRNA methylthiolase [Escherichia coli
           O157:H7 str. TW14359]
 gi|257752561|dbj|BAI24063.1| isopentenyl-adenosine A37 tRNA methylthiolase [Escherichia coli
           O26:H11 str. 11368]
 gi|257758034|dbj|BAI29531.1| isopentenyl-adenosine A37 tRNA methylthiolase [Escherichia coli
           O103:H2 str. 12009]
 gi|257763165|dbj|BAI34660.1| isopentenyl-adenosine A37 tRNA methylthiolase [Escherichia coli
           O111:H- str. 11128]
 gi|260450172|gb|ACX40594.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli DH1]
 gi|284920461|emb|CBG33522.1| isopentenyl-adenosine A37 tRNA methylthiolase [Escherichia coli
           042]
 gi|290761483|gb|ADD55444.1| UPF0004 protein yleA [Escherichia coli O55:H7 str. CB9615]
 gi|291325302|gb|EFE64717.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli B088]
 gi|291428508|gb|EFF01533.1| RNA modification enzyme [Escherichia coli FVEC1412]
 gi|291434014|gb|EFF06987.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli B185]
 gi|298279395|gb|EFI20903.1| Dimethylallyl adenosine tRNA methylthiotransferase miaB
           [Escherichia coli FVEC1302]
 gi|299878159|gb|EFI86370.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli MS
           196-1]
 gi|300298388|gb|EFJ54773.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli MS
           185-1]
 gi|300304469|gb|EFJ58989.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli MS
           200-1]
 gi|300314167|gb|EFJ63951.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli MS
           175-1]
 gi|300355389|gb|EFJ71259.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli MS
           198-1]
 gi|300396156|gb|EFJ79694.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli MS 69-1]
 gi|300400473|gb|EFJ84011.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli MS 84-1]
 gi|300407252|gb|EFJ90790.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli MS 45-1]
 gi|300449567|gb|EFK13187.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli MS
           116-1]
 gi|300457112|gb|EFK20605.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli MS 21-1]
 gi|300460623|gb|EFK24116.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli MS
           187-1]
 gi|300524369|gb|EFK45438.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli MS
           119-7]
 gi|300529513|gb|EFK50575.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli MS
           107-1]
 gi|300842698|gb|EFK70458.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli MS
           124-1]
 gi|301077692|gb|EFK92498.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli MS
           146-1]
 gi|306907324|gb|EFN37829.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli W]
 gi|307552525|gb|ADN45300.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli ABU
           83972]
 gi|308925717|gb|EFP71198.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Shigella dysenteriae
           1617]
 gi|309700899|emb|CBJ00196.1| isopentenyl-adenosine A37 tRNA methylthiolase [Escherichia coli
           ETEC H10407]
 gi|310337387|gb|EFQ02525.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli 1827-70]
 gi|315059915|gb|ADT74242.1| isopentenyl-adenosine A37 tRNA methylthiolase [Escherichia coli W]
 gi|315135327|dbj|BAJ42486.1| hypothetical protein ECDH1ME8569_0630 [Escherichia coli DH1]
 gi|315255031|gb|EFU34999.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli MS 85-1]
 gi|315292085|gb|EFU51437.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli MS
           153-1]
 gi|315616417|gb|EFU97034.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli 3431]
 gi|320193067|gb|EFW67707.1| tRNA-i(6)A37 methylthiotransferase [Escherichia coli O157:H7 str.
           EC1212]
 gi|320643515|gb|EFX12685.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Escherichia
           coli O157:H- str. 493-89]
 gi|320648850|gb|EFX17477.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Escherichia
           coli O157:H- str. H 2687]
 gi|320660116|gb|EFX27646.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Escherichia
           coli O55:H7 str. USDA 5905]
 gi|320664914|gb|EFX32049.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Escherichia
           coli O157:H7 str. LSU-61]
 gi|323153611|gb|EFZ39859.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli EPECa14]
 gi|323158884|gb|EFZ44895.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli E128010]
 gi|323179860|gb|EFZ65417.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli 1180]
 gi|323184984|gb|EFZ70351.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli 1357]
 gi|323379521|gb|ADX51789.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli KO11]
 gi|323938422|gb|EGB34676.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli E1520]
 gi|323943075|gb|EGB39234.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli E482]
 gi|323945136|gb|EGB41198.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli H120]
 gi|323963229|gb|EGB58797.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli H489]
 gi|323967607|gb|EGB63023.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli M863]
 gi|323972115|gb|EGB67329.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli TA007]
 gi|324006281|gb|EGB75500.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli MS 57-2]
 gi|324010389|gb|EGB79608.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli MS 60-1]
 gi|324114782|gb|EGC08750.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia fergusonii
           B253]
 gi|324116735|gb|EGC10650.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli E1167]
 gi|325498160|gb|EGC96019.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Escherichia
           fergusonii ECD227]
 gi|326341412|gb|EGD65204.1| tRNA-i(6)A37 methylthiotransferase [Escherichia coli O157:H7 str.
           1044]
 gi|326345808|gb|EGD69547.1| tRNA-i(6)A37 methylthiotransferase [Escherichia coli O157:H7 str.
           1125]
 gi|327254346|gb|EGE65968.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli STEC_7v]
 gi|331037962|gb|EGI10182.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli H736]
 gi|331049953|gb|EGI22011.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli M718]
 gi|331060450|gb|EGI32414.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli TA143]
 gi|331066240|gb|EGI38124.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli TA271]
 gi|331070662|gb|EGI42025.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli TA280]
 gi|331076381|gb|EGI47663.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli H591]
 gi|331080759|gb|EGI51933.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli H299]
 gi|332094333|gb|EGI99384.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Shigella boydii 5216-82]
          Length = 474

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 199/448 (44%), Positives = 293/448 (65%), Gaps = 14/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS +M D+   + GY+  +  ++AD+++LNTC IREKA EKV+  
Sbjct: 3   KKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTDVAEEADVLLLNTCSIREKAQEKVFHQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK    ++  DL++ V GCVA  EGE I +R+  V+++ GPQT +RLPE++   
Sbjct: 63  LGRWKLLK----EKNPDLIIGVGGCVASQEGEHIRQRAHYVDIIFGPQTLHRLPEMINSV 118

Query: 144 RFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           R G R  VVD  +   +KF+RL        R  G TAF++I EGC+K+CT+CVVPYTRG 
Sbjct: 119 R-GDRSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTYCVVPYTRGE 172

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E+SR    ++ E  +L   GV E+ LLGQNVNAWRG+  DG   +F+DLL  ++ I G+ 
Sbjct: 173 EVSRPSDDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTTGSFADLLRLVAAIDGID 232

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHP + +D +I+ + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II +
Sbjct: 233 RIRFTTSHPIEFTDDIIEVYRDTPELVSFLHLPVQSGSDRILNLMGRTHTALEYKAIIRK 292

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R+ RPDI ISSDFIVGFPGET +DF  TM L+  + +  ++SF +S R GTP ++M++ 
Sbjct: 293 LRAARPDIQISSDFIVGFPGETTEDFEKTMKLIADVNFDMSYSFIFSARPGTPAADMVDD 352

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVL 440
           V E  K +RL  LQ+++ +Q ++++   +G    +L+E   ++   +L GR+   + V  
Sbjct: 353 VPEEEKKQRLYILQERINQQAMAWSRRMLGTTQRILVEGTSRKSIMELSGRTENNRVVNF 412

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 IG  + V ITDV  ++L G++V
Sbjct: 413 EGTPDMIGKFVDVEITDVYPNSLRGKVV 440


>gi|229891223|sp|B2SW86|MIAB_XANOP RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
          Length = 484

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 206/463 (44%), Positives = 299/463 (64%), Gaps = 19/463 (4%)

Query: 14  VSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHI 72
           V++     +V  + ++K++GCQMN YDS +M D+   S+G E  ++ ++AD++++NTC I
Sbjct: 25  VARPSAPAVVRGKLYIKTHGCQMNEYDSAKMADVLAASEGLELTDNPEEADVVLVNTCSI 84

Query: 73  REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT 132
           REKA EKV+S LGR + LK      G  +++ V GCVA  EGE I++R+P V++V GPQT
Sbjct: 85  REKAQEKVFSQLGRWKALKAG----GKPVIIGVGGCVASQEGEAIVKRAPYVDLVFGPQT 140

Query: 133 YYRLPELLERAR--FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190
            +RLPEL+ RAR   GK  VD  +   +KF+RL        R  G +AF++I EGC K+C
Sbjct: 141 LHRLPELI-RARRESGKSQVDISFPEIEKFDRLP-----EPRAEGPSAFVSIMEGCSKYC 194

Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-GLD-GEKCTFS 248
           +FCVVPYTRG E+SR    V+ E  +L   GV EI LLGQNVNA+RG  G D G+   ++
Sbjct: 195 SFCVVPYTRGEEVSRPFEDVLVEVAQLAAQGVREINLLGQNVNAYRGAYGADAGDPAQYA 254

Query: 249 DL---LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
           DL   + ++++I+G+ R+R+TTSHP + SD L+ A+ D+  L   LHLPVQ+GSDRIL +
Sbjct: 255 DLGLLIRTIAQIEGIGRIRFTTSHPLEFSDSLVDAYRDVPQLANCLHLPVQAGSDRILSA 314

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           M R +TA E++  I ++R+VRPDI+ISSDFIVGFPGET+ DF  TM L++ +G+ Q+FSF
Sbjct: 315 MKRGYTALEFKSRIRKLRAVRPDISISSDFIVGFPGETEADFEKTMKLIEDVGFDQSFSF 374

Query: 366 KYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KE 424
            YS R GTP S++ +   E VK  RL  LQ  +     S + + VG +  VL+E    ++
Sbjct: 375 VYSRRPGTPASDLQDDTPETVKQARLARLQAHISAHAASISQSMVGSVQRVLVEGPSRRD 434

Query: 425 KGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
             +L G+S  ++ V        IG  + V IT+   ++L G +
Sbjct: 435 PNELTGKSENMRPVNFPGNPRLIGQFVDVLITEAMSNSLRGRI 477


>gi|317491143|ref|ZP_07949579.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Enterobacteriaceae
           bacterium 9_2_54FAA]
 gi|316920690|gb|EFV42013.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Enterobacteriaceae
           bacterium 9_2_54FAA]
          Length = 474

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 196/447 (43%), Positives = 291/447 (65%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           Q+  +K++GCQMN YDS +M D+  S  G+E  ++ ++AD+++LNTC IREKA EKV+  
Sbjct: 3   QKLHIKTWGCQMNEYDSSKMADLLGSTHGFELTDNAEEADVLLLNTCSIREKAQEKVFHQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK +      ++++ V GCVA  EG+ + +R+  V++V GPQT +RLPE++ + 
Sbjct: 63  LGRWKLLKEA----NPNVIIGVGGCVASQEGKLLRQRAHYVDIVFGPQTLHRLPEMINKV 118

Query: 144 RFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           R  K  VVD  +   +KF+RL        R  G +AF++I EGC+K+CT+CVVPYTRG E
Sbjct: 119 RGSKSPVVDVSFPEIEKFDRLP-----EPRAEGPSAFVSIMEGCNKYCTYCVVPYTRGEE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR    V+ E  +L   GV E+ LLGQNVNA+RG   DG+ CTF++LL  ++ I G+ R
Sbjct: 174 VSRPADDVLFEIAQLAAQGVREVNLLGQNVNAYRGPSFDGDICTFAELLRLVAAIDGIDR 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP + +D +I  + D   L+ +LHLPVQSGSDRIL  M R HT  EY+ II ++
Sbjct: 234 IRFTTSHPIEFTDDIIAVYEDTPELVSFLHLPVQSGSDRILNLMKRTHTVLEYKSIIRKL 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R  RPDI ISSDFI+GFPGET +DF  TM L+ ++ +  ++SF +SPR GTP ++M + V
Sbjct: 294 RKARPDILISSDFIIGFPGETQEDFEQTMKLIAEVNFDVSYSFVFSPRPGTPAADMADDV 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441
            E  K +RL  LQ ++ +Q  S++   VG +  +L+E   ++   ++ GR+   + V   
Sbjct: 354 PEEEKKQRLYILQDRINQQAQSYSRKMVGTVQRILVEGISRKNVMEMSGRTENNRVVNFE 413

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                +G  + V IT+V+ ++L G LV
Sbjct: 414 GSPELVGTFVDVEITEVRTNSLRGVLV 440


>gi|283784432|ref|YP_003364297.1| isopentenyl-adenosine A37 tRNA methylthiolase [Citrobacter
           rodentium ICC168]
 gi|282947886|emb|CBG87448.1| isopentenyl-adenosine A37 tRNA methylthiolase [Citrobacter
           rodentium ICC168]
          Length = 474

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 198/448 (44%), Positives = 292/448 (65%), Gaps = 14/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS +M D+   + GY+  +  ++AD+++LNTC IREKA EKV+  
Sbjct: 3   KKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTDVAEEADVLLLNTCSIREKAQEKVFHQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK    ++  DL++ V GCVA  EG+ I +R+  V+++ GPQT +RLPE++   
Sbjct: 63  LGRWKLLK----EKNPDLIIGVGGCVASQEGDHIRQRAHYVDIIFGPQTLHRLPEMINSV 118

Query: 144 RFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           R G R  VVD  +   +KF+RL        R  G TAF++I EGC+K+CT+CVVPYTRG 
Sbjct: 119 R-GNRSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTYCVVPYTRGE 172

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E+SR    ++ E  +L   GV E+ LLGQNVNAWRG+  DG   +F+DLL  ++ I G+ 
Sbjct: 173 EVSRPSDDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTTGSFADLLRLVAAIDGID 232

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHP + +D +I+ + D   L+ +LHLPVQSGSDR+L  M R HTA EY+ II +
Sbjct: 233 RIRFTTSHPIEFTDDIIEVYRDTPELVSFLHLPVQSGSDRVLNLMGRTHTALEYKAIIRK 292

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R+ RPDI ISSDFIVGFPGET  DF  TM L+  + +  ++SF +S R GTP ++M++ 
Sbjct: 293 LRAARPDIQISSDFIVGFPGETTQDFEQTMKLIADVNFDMSYSFIFSARPGTPAADMVDD 352

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVL 440
           V E  K +RL  LQ ++ +Q ++++   +G I  +L+E   ++   +L GR+   + V  
Sbjct: 353 VPEEEKKQRLYILQDRINQQAMAWSRRMLGTIQRILVEGTSRKSIMELSGRTENNRVVNF 412

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 IG  + V ITDV  ++L G++V
Sbjct: 413 EGSPEMIGKFVDVEITDVWTNSLRGKVV 440


>gi|320654434|gb|EFX22481.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Escherichia
           coli O55:H7 str. 3256-97 TW 07815]
          Length = 474

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 199/448 (44%), Positives = 293/448 (65%), Gaps = 14/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS +M D+   + GY+  +  ++AD+++LNTC IREKA EKV+  
Sbjct: 3   KKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTDVAEEADVLLLNTCSIREKAQEKVFHQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK    ++  DL++ V GCVA  EGE I +R+  V+++ GPQT +RLPE++   
Sbjct: 63  LGRWKLLK----EKNPDLIIGVGGCVASQEGEHIRQRAHYVDIIFGPQTLHRLPEMINSV 118

Query: 144 RFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           R G R  VVD  +   +KF+RL        R  G TAF++I EGC+K+CT+CVVPYTRG 
Sbjct: 119 R-GDRSPVVDISFPEIEKFDRLP-----EPRTEGPTAFVSIMEGCNKYCTYCVVPYTRGE 172

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E+SR    ++ E  +L   GV E+ LLGQNVNAWRG+  DG   +F+DLL  ++ I G+ 
Sbjct: 173 EVSRPSDDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTTGSFADLLRLVAAIDGID 232

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHP + +D +I+ + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II +
Sbjct: 233 RIRFTTSHPIEFTDDIIEVYRDTPELVSFLHLPVQSGSDRILNLMGRTHTALEYKAIIRK 292

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R+ RPDI ISSDFIVGFPGET +DF  TM L+  + +  ++SF +S R GTP ++M++ 
Sbjct: 293 LRAARPDIQISSDFIVGFPGETTEDFEKTMKLIADVNFDMSYSFIFSARPGTPAADMVDD 352

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVL 440
           V E  K +RL  LQ+++ +Q ++++   +G    +L+E   ++   +L GR+   + V  
Sbjct: 353 VPEEEKKQRLYILQERINQQAMAWSRRMLGTTQRILVEGTSRKSIMELSGRTENNRVVNF 412

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 IG  + V ITDV  ++L G++V
Sbjct: 413 EGTPDMIGKFVDVEITDVYPNSLRGKVV 440


>gi|239813975|ref|YP_002942885.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Variovorax
           paradoxus S110]
 gi|239800552|gb|ACS17619.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Variovorax paradoxus
           S110]
          Length = 454

 Score =  383 bits (983), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 203/449 (45%), Positives = 287/449 (63%), Gaps = 15/449 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ F+K++GCQMN YDS +M D+  + QGYE   ++D+ADLI+ NTC +REKA EKV+S 
Sbjct: 3   KKVFIKTFGCQMNEYDSDKMADVLHAAQGYEPTQNVDEADLILFNTCSVREKAQEKVFSD 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-ER 142
           LGR+++LK   +K G      V GCVA  EGE I+ R+P V++V GPQT +RLPE+L +R
Sbjct: 63  LGRVKHLKAKGVKIG------VGGCVASQEGEAIIARAPYVDIVFGPQTLHRLPEMLNDR 116

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            R  +  VD  +   +KF+ L        R  G TAF++I EGC K+C++CVVPYTRG E
Sbjct: 117 ERLDRPQVDISFPEIEKFDHLPPA-----RVDGATAFVSIMEGCSKYCSYCVVPYTRGEE 171

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-GLDGEKCTFSDLLYSLSEIKGLV 261
           ++R L  V+ E   L D GV E+TLLGQNVNA+RG+ G   E   F+ L+  ++EI G+ 
Sbjct: 172 VNRPLDDVLVEIAGLADQGVREVTLLGQNVNAYRGRMGDTAEIADFALLIEYVAEIPGIE 231

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+RYTTSHP + +  LI+A+  +  L+ +LHLPVQ GSDRIL +M R +TA EY+  + +
Sbjct: 232 RIRYTTSHPNEFTPRLIEAYAKVPQLVSHLHLPVQHGSDRILMAMKRGYTAMEYKSTVRK 291

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R++RP++A+SSDFIVGFPGETD+DF   M L+D   +  +FSF +SPR GTP + + + 
Sbjct: 292 LRAIRPELALSSDFIVGFPGETDEDFAKMMKLIDDCQFDNSFSFIFSPRPGTPAAALQDD 351

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVL 440
               VK  RL  LQ+ +      F DA VG    VL+E    K+  +L+GR+   + V  
Sbjct: 352 TPHAVKLARLQTLQRVIDGNVRRFGDALVGTTQCVLVEGASRKDANELMGRTACNRVVNF 411

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELVV 469
                 +G +  +RIT     TL GE+  
Sbjct: 412 EGDARLVGQMADLRITRSLAYTLRGEVAT 440


>gi|24112041|ref|NP_706551.1| hypothetical protein SF0621 [Shigella flexneri 2a str. 301]
 gi|30062152|ref|NP_836323.1| hypothetical protein S0643 [Shigella flexneri 2a str. 2457T]
 gi|110804691|ref|YP_688211.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Shigella
           flexneri 5 str. 8401]
 gi|209917923|ref|YP_002292007.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Escherichia
           coli SE11]
 gi|300920521|ref|ZP_07136947.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli MS
           115-1]
 gi|81723658|sp|Q83LY3|MIAB_SHIFL RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|122957570|sp|Q0T6S0|MIAB_SHIF8 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|229890530|sp|B6HYN0|MIAB_ECOSE RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|24050864|gb|AAN42258.1| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301]
 gi|30040397|gb|AAP16129.1| hypothetical protein S0643 [Shigella flexneri 2a str. 2457T]
 gi|110614239|gb|ABF02906.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401]
 gi|209911182|dbj|BAG76256.1| conserved hypothetical protein [Escherichia coli SE11]
 gi|281600005|gb|ADA72989.1| protein yleA [Shigella flexneri 2002017]
 gi|300412460|gb|EFJ95770.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli MS
           115-1]
 gi|313649693|gb|EFS14117.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Shigella flexneri 2a str.
           2457T]
 gi|320198212|gb|EFW72816.1| tRNA-i(6)A37 methylthiotransferase [Escherichia coli EC4100B]
 gi|324016069|gb|EGB85288.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli MS
           117-3]
 gi|332760967|gb|EGJ91255.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Shigella flexneri
           4343-70]
 gi|332761234|gb|EGJ91520.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Shigella flexneri
           2747-71]
 gi|332768235|gb|EGJ98420.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Shigella flexneri
           2930-71]
 gi|333007424|gb|EGK26904.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Shigella flexneri VA-6]
 gi|333007943|gb|EGK27419.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Shigella flexneri K-218]
 gi|333010077|gb|EGK29512.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Shigella flexneri K-272]
 gi|333020908|gb|EGK40168.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Shigella flexneri K-227]
 gi|333021472|gb|EGK40722.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Shigella flexneri K-304]
          Length = 474

 Score =  383 bits (983), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 199/448 (44%), Positives = 293/448 (65%), Gaps = 14/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS +M D+   + GY+  +  ++AD+++LNTC IREKA EKV+  
Sbjct: 3   KKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTDVAEEADVLLLNTCSIREKAQEKVFHQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK    ++  DL++ V GCVA  EGE I +R+  V+++ GPQT +RLPE++   
Sbjct: 63  LGRWKLLK----EKNPDLIIGVGGCVASQEGEHIRQRAHYVDIIFGPQTLHRLPEMINSV 118

Query: 144 RFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           R G R  VVD  +   +KF+RL        R  G TAF++I EGC+K+CT+CVVPYTRG 
Sbjct: 119 R-GDRSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTYCVVPYTRGE 172

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E+SR    ++ E  +L   GV E+ LLGQNVNAWRG+  DG   +F+DLL  ++ I G+ 
Sbjct: 173 EVSRPSDDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTTGSFADLLRLVAAIDGID 232

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHP + +D +I+ + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II +
Sbjct: 233 RIRFTTSHPIEFTDDIIEVYRDTPELVSFLHLPVQSGSDRILNLMGRTHTALEYKAIIRK 292

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R+ RPDI ISSDFIVGFPGET +DF  TM L+  + +  ++SF +S R GTP ++M++ 
Sbjct: 293 LRAARPDIQISSDFIVGFPGETTEDFEKTMKLIADVNFDMSYSFIFSARPGTPAADMVDD 352

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVL 440
           V E  K +RL  LQ+++ +Q ++++   +G    +L+E   ++   +L GR+   + V  
Sbjct: 353 VPEEEKKQRLYILQERINQQAMAWSRRMLGTTQRILVEGTSRKSIMELSGRTENNRVVNF 412

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 IG  + V ITDV  ++L G++V
Sbjct: 413 EGTPDMIGKFVDVEITDVYPNSLRGKVV 440


>gi|292898859|ref|YP_003538228.1| MiaB protein (methylthiolation of isopentenylated A37 derivatives I
           rRNA) [Erwinia amylovora ATCC 49946]
 gi|291198707|emb|CBJ45816.1| MiaB protein (methylthiolation of isopentenylated A37 derivatives I
           rRNA) [Erwinia amylovora ATCC 49946]
          Length = 474

 Score =  383 bits (983), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 198/447 (44%), Positives = 289/447 (64%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS +M D+  S  GY      +DAD+++LNTC IREKA EKV+  
Sbjct: 3   KKLHIKTWGCQMNEYDSSKMADLLNSTHGYTLTEQAEDADVLLLNTCSIREKAQEKVFGL 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK +      +L++ V GCVA  EG +I +R+  V++V GPQT +RLPE++   
Sbjct: 63  LGRWKKLKEA----NPNLIIGVGGCVASQEGAKIRQRASCVDIVFGPQTLHRLPEMINSV 118

Query: 144 RFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           R  K  VVD  +   +KF+R+        R  G TAF++I EGC+K+CTFCVVPYTRG E
Sbjct: 119 RGSKSPVVDVSFPEIEKFDRMP-----EPRADGPTAFVSIMEGCNKYCTFCVVPYTRGEE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR    ++ E  +L   GV E+ LLGQNVNA+RG   DG  C+F++LL  ++ I G+ R
Sbjct: 174 VSRPADDILFEVAQLAAQGVREVNLLGQNVNAYRGATYDGGICSFAELLRLVAAIDGIDR 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP + +D +I+ + D   L+ YLHLPVQSG+DRIL  M R HTA EY+ II ++
Sbjct: 234 IRFTTSHPIEFTDDIIEVYRDTPELVSYLHLPVQSGADRILTLMKRAHTALEYKAIIRKL 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
            + RPDI ISSDFI+GFPGET  DF  TM LV +I +  ++SF YS R GTP + + + V
Sbjct: 294 LAARPDIQISSDFIIGFPGETQADFEQTMKLVGEINFDTSYSFIYSARPGTPAAELPDDV 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441
            E+ K +RL  LQ ++ +Q ++++   +G +  +L+E   ++   +L GR+   + V   
Sbjct: 354 SEDEKKQRLYVLQDRISQQAMAWSRRKLGTVQRILVEGTSRKNVMELSGRTECNRVVNFE 413

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
           +   +IG  + V+ITDV  ++L G L+
Sbjct: 414 ATPDHIGKFVDVKITDVYANSLRGVLL 440


>gi|292487621|ref|YP_003530493.1| hypothetical protein EAMY_1135 [Erwinia amylovora CFBP1430]
 gi|291553040|emb|CBA20085.1| UPF0004 protein PA3980 [Erwinia amylovora CFBP1430]
          Length = 480

 Score =  382 bits (982), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 198/447 (44%), Positives = 289/447 (64%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS +M D+  S  GY      +DAD+++LNTC IREKA EKV+  
Sbjct: 9   KKLHIKTWGCQMNEYDSSKMADLLNSTHGYTLTEQAEDADVLLLNTCSIREKAQEKVFGL 68

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK +      +L++ V GCVA  EG +I +R+  V++V GPQT +RLPE++   
Sbjct: 69  LGRWKKLKEA----NPNLIIGVGGCVASQEGAKIRQRASCVDIVFGPQTLHRLPEMINSV 124

Query: 144 RFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           R  K  VVD  +   +KF+R+        R  G TAF++I EGC+K+CTFCVVPYTRG E
Sbjct: 125 RGSKSPVVDVSFPEIEKFDRMP-----EPRADGPTAFVSIMEGCNKYCTFCVVPYTRGEE 179

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR    ++ E  +L   GV E+ LLGQNVNA+RG   DG  C+F++LL  ++ I G+ R
Sbjct: 180 VSRPADDILFEVAQLAAQGVREVNLLGQNVNAYRGATYDGGICSFAELLRLVAAIDGIDR 239

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP + +D +I+ + D   L+ YLHLPVQSG+DRIL  M R HTA EY+ II ++
Sbjct: 240 IRFTTSHPIEFTDDIIEVYRDTPELVSYLHLPVQSGADRILTLMKRAHTALEYKAIIRKL 299

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
            + RPDI ISSDFI+GFPGET  DF  TM LV +I +  ++SF YS R GTP + + + V
Sbjct: 300 LAARPDIQISSDFIIGFPGETQADFEQTMKLVGEINFDTSYSFIYSARPGTPAAELPDDV 359

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441
            E+ K +RL  LQ ++ +Q ++++   +G +  +L+E   ++   +L GR+   + V   
Sbjct: 360 SEDEKKQRLYVLQDRISQQAMAWSRRKLGTVQRILVEGTSRKNVMELSGRTECNRVVNFE 419

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
           +   +IG  + V+ITDV  ++L G L+
Sbjct: 420 ATPDHIGKFVDVKITDVYANSLRGVLL 446


>gi|82703805|ref|YP_413371.1| tRNA-i(6)A37 modification enzyme MiaB [Nitrosospira multiformis
           ATCC 25196]
 gi|123754233|sp|Q2Y5J2|MIAB_NITMU RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|82411870|gb|ABB75979.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Nitrosospira multiformis
           ATCC 25196]
          Length = 474

 Score =  382 bits (982), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 207/450 (46%), Positives = 289/450 (64%), Gaps = 15/450 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ ++K++GCQMN YDS +M D+   +Q  E+ +    AD+I+ NTC +REKA EKV+  
Sbjct: 3   KKLYIKTFGCQMNEYDSKKMADVLRDAQHMEKTDDPAAADVILFNTCSVREKAQEKVFHD 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE-R 142
           LGR+R+LK +      DLL+ V GCVA  EG EI++R+P V++V GPQT +RLP+++  R
Sbjct: 63  LGRVRHLKAA----NPDLLIGVGGCVASQEGAEIVKRAPYVDLVFGPQTLHRLPQMISTR 118

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
              G+  VD  +   +KF+ L        R  GVTAF++I EGC K+C+FCVVPYTRG E
Sbjct: 119 QITGRPQVDISFPEIEKFDHLPPA-----RTEGVTAFVSIMEGCSKYCSFCVVPYTRGEE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK---GLDGEKCTFSDLLYSLSEIKG 259
           ISR L  ++ E   L + GV E+TLLGQNVNA+RG+     +GE   F+ LL  L EI G
Sbjct: 174 ISRPLDDILTEIAGLTNLGVKEVTLLGQNVNAYRGRMQYAEEGELADFALLLEYLHEIPG 233

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           + R+RYTTSHPR+ +  LI+A+     L+ ++HLPVQSGSDRIL +M R +T+ EY+ II
Sbjct: 234 IERIRYTTSHPREFTPRLIEAYKASPKLVSHVHLPVQSGSDRILAAMKRGYTSLEYKSII 293

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            R+R+ RPDI+I+SDFIVGFPGET+ DF ATM L++ + +  +FSF YS R GTP + + 
Sbjct: 294 RRLRAARPDISITSDFIVGFPGETEADFEATMKLIEAVNFDGSFSFIYSSRPGTPAAGLE 353

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSV 438
           +     VK ERL  LQ+K+  Q  + +   VG    VL+E    K+ G+L GR+   + V
Sbjct: 354 DTTPHQVKLERLQRLQEKVELQAQAISVRMVGTTQRVLVEGLSRKDPGELSGRTDNNRVV 413

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468
                   IG   +++IT     TL GE V
Sbjct: 414 NFPGSPEMIGKFAELKITAALSHTLRGENV 443


>gi|331001262|ref|ZP_08324888.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Parasutterella
           excrementihominis YIT 11859]
 gi|329568989|gb|EGG50785.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Parasutterella
           excrementihominis YIT 11859]
          Length = 441

 Score =  382 bits (982), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 200/447 (44%), Positives = 291/447 (65%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDS-LRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ ++K++GCQMN YDS    +    + GYE  + +++ADL+V NTC IREKA EKV+S 
Sbjct: 4   KKIYLKTFGCQMNEYDSGKIADIAKAAAGYEVTDDINEADLVVFNTCSIREKAQEKVFSD 63

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR+R LK ++     +L + V GCVA  EG  I+RR+P V+VV GPQT +RLPELLE+ 
Sbjct: 64  LGRVRELKKTK----PNLKIAVGGCVASQEGGNIVRRAPYVDVVFGPQTLHRLPELLEKN 119

Query: 144 RFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
               R  VD  +   +KF+RL             TAF++I EGC K+C++CVVPYTRG E
Sbjct: 120 EKEHRPQVDISFPEIEKFDRLPTPHAD-----AATAFVSIMEGCSKYCSYCVVPYTRGEE 174

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR +  V+ E  +L   GV E+TLLGQNVNA+RG+G DGE   F+ LL  ++EI G+ R
Sbjct: 175 FSRPVEDVLVEIAQLAAQGVKEVTLLGQNVNAYRGEGPDGEIVDFALLLEYVAEIDGIER 234

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +RYTTSHP++ ++ LI+A+  + +L  ++HLPVQ+GSDR+L  M R +T  EY+ II ++
Sbjct: 235 IRYTTSHPKEFTNRLIEAYRKIPILANHVHLPVQAGSDRVLAGMKRGYTILEYKSIIRKL 294

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R++RPDI+I++DFIVGFP ET++DF  TM+L+ +I +  +FSF YS R GTP + + +  
Sbjct: 295 RAIRPDISIATDFIVGFPNETEEDFEKTMNLIKEIKFDASFSFVYSKRPGTPAAELPDDT 354

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRSPWLQSVVLN 441
            ++VK ERL  LQ    +     + + VG +   L+    K+ +GKL  R+   + V  N
Sbjct: 355 PQSVKLERLQRLQALNTQHAQEISQSMVGSVQRCLVVGEAKKGEGKLSARTDNNRIVTFN 414

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
              + IG ++ ++I +V   TL GELV
Sbjct: 415 GPENLIGQMVNLKINEVYPHTLGGELV 441


>gi|310766988|gb|ADP11938.1| Putative tRNA-thiotransferase [Erwinia sp. Ejp617]
          Length = 480

 Score =  382 bits (982), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 198/447 (44%), Positives = 287/447 (64%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS +M D+  S  GY      +DAD+++LNTC IREKA EKV+  
Sbjct: 9   KKLHIKTWGCQMNEYDSSKMADLLNSTHGYTLTEQAEDADVLLLNTCSIREKAQEKVFGL 68

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK +      D+++ V GCVA  EG +I +R+  V++V GPQT +RLPE++ R 
Sbjct: 69  LGRWKKLKEA----NPDVIIGVGGCVASQEGAQIRQRASCVDIVFGPQTLHRLPEMINRV 124

Query: 144 RFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           R  K  VVD  +   +KF+R+        R  G TAF++I EGC+K+CTFCVVPYTRG E
Sbjct: 125 RGTKSPVVDVSFPEIEKFDRMP-----EPRANGPTAFVSIMEGCNKYCTFCVVPYTRGEE 179

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR    V+ E  +L   GV E+ LLGQNVNA+RG   DG  C+F++LL  ++ I G+ R
Sbjct: 180 VSRPADDVLFEVAQLAAQGVREVNLLGQNVNAYRGATYDGGICSFAELLRLVATIDGIDR 239

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP + +D +I+ + D   L+ +LHLPVQSG+DRIL  M R HTA EY+ II ++
Sbjct: 240 IRFTTSHPIEFTDDIIEVYRDTPELVSFLHLPVQSGADRILTLMKRAHTALEYKAIIRKL 299

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
            + RPDI ISSDFI+GFPGE   DF  TM LV +I +  ++SF YS R GTP +++ + V
Sbjct: 300 LAARPDIQISSDFIIGFPGENQADFEQTMKLVGEINFDTSYSFIYSARPGTPAADLPDDV 359

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441
            E  K +RL  LQ ++ +Q ++++   +G +  +L+E   ++   +L GR+   + V   
Sbjct: 360 SEEEKKQRLYILQDRISQQAMAWSRRKLGTVQRILVEGTSRKSVMELAGRTECNRVVNFE 419

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
               +IG  + V ITDV  ++L G L+
Sbjct: 420 GSPEHIGKFVDVEITDVYANSLRGVLL 446


>gi|15800374|ref|NP_286386.1| hypothetical protein Z0810 [Escherichia coli O157:H7 EDL933]
 gi|25305438|pir||F85566 hypothetical protein yleA [imported] - Escherichia coli  (strain
           O157:H7, substrain EDL933)
 gi|12513570|gb|AAG54994.1|AE005245_3 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933]
          Length = 474

 Score =  382 bits (982), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 199/448 (44%), Positives = 292/448 (65%), Gaps = 14/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS +M D+   + GY+  +  ++AD+++LNTC IREKA EKV+  
Sbjct: 3   KKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTDVAEEADVLLLNTCSIREKAQEKVFHQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK    ++  DL++ V GCVA  EGE I +R+  V+++ GPQT +RLPE++   
Sbjct: 63  LGRWKLLK----EKNPDLIIGVGGCVASQEGEHIRQRAHYVDIIFGPQTLHRLPEMINSV 118

Query: 144 RFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           R G R  VVD  +   +KF+RL        R  G TAF++I EGC+K+CT+CVVPYTRG 
Sbjct: 119 R-GDRSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTYCVVPYTRGE 172

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E+SR    ++ E  +L   GV E+ LLGQNVNAWRG+  DG   +F+DLL  ++ I G+ 
Sbjct: 173 EVSRPSDDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTTGSFADLLRLVAAIDGID 232

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHP + +D +I+ + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II +
Sbjct: 233 RIRFTTSHPIEFTDDIIEVYRDTPELVSFLHLPVQSGSDRILNLMGRTHTALEYKAIIRK 292

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R+ RPDI ISSDFIVGFPGET +DF  TM L+  + +  ++SF +S R GTP ++M++ 
Sbjct: 293 LRAARPDIQISSDFIVGFPGETTEDFEKTMKLIADVNFDMSYSFIFSARPGTPAADMVDD 352

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVL 440
           V E  K +RL  LQ+++ +Q +++    +G    +L+E   ++   +L GR+   + V  
Sbjct: 353 VPEEEKKQRLYILQERINQQAMAWXRRMLGTTQRILVEGTSRKSIMELSGRTENNRVVNF 412

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 IG  + V ITDV  ++L G++V
Sbjct: 413 EGTPDMIGKFVDVEITDVYPNSLRGKVV 440


>gi|152984799|ref|YP_001346514.1| hypothetical protein PSPA7_1128 [Pseudomonas aeruginosa PA7]
 gi|229890606|sp|A6V0C9|MIAB_PSEA7 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|150959957|gb|ABR81982.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Pseudomonas aeruginosa
           PA7]
          Length = 446

 Score =  382 bits (982), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 202/448 (45%), Positives = 285/448 (63%), Gaps = 13/448 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ F++++GCQMN YDS RM D+    Q  E   +  +AD+I+LNTC IREKA EKV+S 
Sbjct: 3   KKLFIETHGCQMNEYDSSRMADLLGEHQALEVTENAAEADVILLNTCSIREKAQEKVFSK 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LG  R+LK    ++  DL++ V GCVA  EG  I  R+P V+VV GPQT +RLPE+++ A
Sbjct: 63  LGMWRDLK----QQNPDLVIGVGGCVASQEGAAIRERAPYVDVVFGPQTLHRLPEMIDAA 118

Query: 144 RFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           R  ++  VD  +   +KF+RL        R  G TAF+++ EGC K+C+FCVVPYTRG E
Sbjct: 119 RSTRKPQVDVSFPEIEKFDRLP-----EPRVDGPTAFVSVMEGCSKYCSFCVVPYTRGEE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR    V+ E   L +NGV E+TLLGQNVN +RG+  DG    F++LL  ++ + G+ R
Sbjct: 174 VSRPFDDVIAEVIHLAENGVREVTLLGQNVNGFRGQTHDGRLADFAELLRVVAAVDGIER 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +RYTTSHP + SD LI+AH ++  L+ ++HLPVQSGSDR+L +M R HT  EY+  I ++
Sbjct: 234 IRYTTSHPLEFSDALIQAHAEVPELVKFIHLPVQSGSDRVLAAMKRNHTVLEYKSRIRKL 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           ++  PDI ISSDFIVGFPGET+ DF  TM LV+++G+  +FSF YS R GTP +++ + +
Sbjct: 294 KAAVPDICISSDFIVGFPGETEKDFEQTMKLVEEVGFDFSFSFIYSARPGTPAADLADDL 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLN 441
            E VK  RL  LQ ++ +Q    +   VG    +L+     K+ G L GR+   + V   
Sbjct: 354 PEEVKKRRLQILQGRIHQQGYEISRRMVGSTQRILVTDFSKKDPGMLQGRTENNRIVNFR 413

Query: 442 SKNHN-IGDIIKVRITDVKISTLYGELV 468
             N   IG   +V I D    +L G L+
Sbjct: 414 CDNPRLIGQFAQVHIDDALPHSLRGTLI 441


>gi|307545979|ref|YP_003898458.1| bifunctional enzyme involved in thiolation and methylation of tRNA
           [Halomonas elongata DSM 2581]
 gi|307218003|emb|CBV43273.1| bifunctional enzyme involved in thiolation and methylation of tRNA
           [Halomonas elongata DSM 2581]
          Length = 447

 Score =  382 bits (981), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 199/449 (44%), Positives = 291/449 (64%), Gaps = 14/449 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ F+K++GCQMN YDS RM D+   S   E  +   DAD+I+LNTC IREKA EKV+  
Sbjct: 3   KKLFIKTHGCQMNEYDSARMADLLGESHQLELTDDEHDADVILLNTCSIREKAQEKVFHQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK++      DL++ V GCVA  EGE + +R+P V++V GPQT +R+P +L+  
Sbjct: 63  LGRWKKLKDA----NPDLVIGVGGCVASQEGEALRKRAPQVDMVFGPQTLHRVPAMLDAR 118

Query: 144 RFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           +  K  VVD  +   +KF+ L           G TAF+++ EGC K+CTFCVVPYTRG E
Sbjct: 119 QDDKISVVDVTFPEIEKFDHLP-----KPTSDGATAFVSVMEGCSKYCTFCVVPYTRGEE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR    V+DE   L D GV EI LLGQNVNA+RG+   G++   ++L+  ++ + G+ R
Sbjct: 174 VSRPFEAVMDEVIHLADQGVREINLLGQNVNAYRGENQLGDEIDLAELISCVAAVDGIDR 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP + SD LI+A+G++  L+ +LHLPVQ+GSD +L +M R HT  EY   ++RI
Sbjct: 234 IRFTTSHPVEFSDSLIEAYGEIPELVSHLHLPVQAGSDNVLAAMKRGHTVEEYVDKLERI 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R++RPDI+ SSDFI+GFPGET+ DF +TMDL+ +IG+  +FSF YS R GTP + + ++ 
Sbjct: 294 RALRPDISFSSDFIIGFPGETEADFESTMDLIHRIGFDVSFSFVYSARPGTPAAALPDET 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLN 441
            E VK +RL  LQ+++ +Q +  +   VG    +L+     K+ G+L GR+   + V   
Sbjct: 354 PEAVKKQRLAILQERINQQAMQISRRMVGTTQRILVTGFSPKDPGQLSGRTENNRVVNFR 413

Query: 442 SKNHN--IGDIIKVRITDVKISTLYGELV 468
           + N    IG  + V IT+   ++L G+L 
Sbjct: 414 APNPTELIGYFVDVEITEALPNSLRGDLA 442


>gi|152979971|ref|YP_001352121.1| tRNA modifying enzyme [Janthinobacterium sp. Marseille]
 gi|229890610|sp|A6SV24|MIAB_JANMA RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|151280048|gb|ABR88458.1| tRNA modifying enzyme [Janthinobacterium sp. Marseille]
          Length = 446

 Score =  382 bits (981), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 200/451 (44%), Positives = 295/451 (65%), Gaps = 15/451 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ ++K++GCQMN YDS +M D+   S+G  + ++ +DAD+I+LNTC +REKA EKV+S 
Sbjct: 3   KKIYIKTFGCQMNEYDSDKMVDVLNASEGLIKTDTPEDADVILLNTCSVREKAQEKVFSD 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR+R LK +      DL++ V GCVA  EG+ I++R+P V++V GPQT +RLPE+L++ 
Sbjct: 63  LGRLRELKFN----NPDLVIGVGGCVASQEGDAIVKRAPYVDLVFGPQTLHRLPEMLKQR 118

Query: 144 R-FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           R  G+  VD  +   +KF+ +        +  G TAF++I EGC K+C++CVVPYTRG E
Sbjct: 119 RSTGRSQVDISFPEIEKFDHMPPA-----KVEGATAFVSIMEGCSKYCSYCVVPYTRGEE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR    V+ E   L   GV EITLLGQNVNA+RG+  DGE   F+ L+  ++E++G+ R
Sbjct: 174 VSRRFEDVLAEVAGLEAQGVKEITLLGQNVNAYRGEMADGEIADFALLIEYIAELEGIER 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+ TSHP++ +  LI A+  +  L+ +L+LP Q GSDRIL +M R +T+ EY+ I+ R+
Sbjct: 234 IRFVTSHPKEFTQRLIDAYAKVPKLVNHLYLPAQHGSDRILAAMKRGYTSLEYKSILRRL 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R VRP+I+ISSDFIVGFPGETD DF A M L++ IGY  +FSF +SPR GTP +N+ +  
Sbjct: 294 REVRPNISISSDFIVGFPGETDADFEAMMKLINDIGYDNSFSFIFSPRPGTPAANLEDDT 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSPWLQSVVLN 441
              VK +RL  LQ  + +    ++D  VG +  +L+E    K+  +L GR+   + V   
Sbjct: 354 PHEVKLQRLQRLQAVIDQNTRRYSDEMVGTVQRILVEGPSKKDPDELQGRTENNRVVNFA 413

Query: 442 SKNHN---IGDIIKVRITDVKISTLYGELVV 469
           +  H    IG ++ V I      TL GE++V
Sbjct: 414 AGEHGARLIGQMVDVNIVQSFAYTLRGEIIV 444


>gi|238920797|ref|YP_002934312.1| tRNA-I(6) [Edwardsiella ictaluri 93-146]
 gi|238870366|gb|ACR70077.1| tRNA-I(6) [Edwardsiella ictaluri 93-146]
          Length = 474

 Score =  382 bits (981), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 199/447 (44%), Positives = 289/447 (64%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS ++ D+  S  G E  ++ +DAD+++LNTC IREKA EKV+  
Sbjct: 3   KKLHIKTWGCQMNEYDSSKIADLLGSTHGLELTDNAEDADVLLLNTCSIREKAQEKVFHQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK ++     DL++ V GCVA  EGE I  R+  V+++ GPQT +RLPE+++ A
Sbjct: 63  LGRWKMLKEAK----PDLIIGVGGCVASQEGEHIRERASFVDIIFGPQTLHRLPEMIDSA 118

Query: 144 RFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           R     VVD  +   +KF+RL        R  G TAF++I EGC+K+CT+CVVPYTRG E
Sbjct: 119 RSSHGPVVDVSFPEIEKFDRLP-----EPRADGATAFVSIMEGCNKYCTYCVVPYTRGAE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR    V+ E  +L   GV E+ LLGQNVNA+RG   DG  C+F++LL  ++ I G+ R
Sbjct: 174 VSRPCDDVLFEIAQLAAQGVREVNLLGQNVNAYRGATFDGGICSFAELLRLVAAIDGIDR 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP + SD ++  + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II ++
Sbjct: 234 IRFTTSHPIEFSDDIVAVYEDTPELVSFLHLPVQSGSDRILNLMKRTHTALEYKAIIRKL 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R  RPDI ISSDFIVGFPGET  DF  TM L+ ++ +  ++SF +S R GTP ++ML+ V
Sbjct: 294 RRARPDIQISSDFIVGFPGETQQDFEQTMQLIAEVDFDMSYSFIFSARPGTPAADMLDDV 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441
            E  K +RL  LQ+++ +Q + ++   +G +  +L+E   ++   +L GR+   + V   
Sbjct: 354 AEEEKKQRLYILQERINQQAMRYSRHMLGTVQRILVEGTSRKNVMELSGRTENNRVVNFA 413

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
            +   IG  + V IT V  ++L G +V
Sbjct: 414 GQPEMIGRFVDVEITGVLPNSLRGVVV 440


>gi|188576122|ref|YP_001913051.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Xanthomonas oryzae pv.
           oryzae PXO99A]
 gi|188520574|gb|ACD58519.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Xanthomonas oryzae pv.
           oryzae PXO99A]
          Length = 460

 Score =  382 bits (981), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 203/455 (44%), Positives = 294/455 (64%), Gaps = 17/455 (3%)

Query: 21  CIVPQRFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEK 79
            +V  + ++K++GCQMN YDS +M D+   S+G E  ++ ++AD++++NTC IREKA EK
Sbjct: 8   AVVRGKLYIKTHGCQMNEYDSAKMADVLAASEGLELTDNPEEADVVLVNTCSIREKAQEK 67

Query: 80  VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL 139
           V+S LGR + LK      G  +++ V GCVA  EGE I++R+P V++V GPQT +RLPEL
Sbjct: 68  VFSQLGRWKALKAG----GKPVIIGVGGCVASQEGEAIVKRAPYVDLVFGPQTLHRLPEL 123

Query: 140 LE-RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
           +  R   GK  VD  +   +KF+RL        R  G +AF++I EGC K+C+FCVVPYT
Sbjct: 124 IRARRESGKSQVDISFPEIEKFDRLP-----EPRAEGPSAFVSIMEGCSKYCSFCVVPYT 178

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-GLD-GEKCTFSDL---LYS 253
           RG E+SR    V+ E  +L   GV EI LLGQNVNA+RG  G D G+   ++DL   + +
Sbjct: 179 RGEEVSRPFEDVLVEVAQLAAQGVREINLLGQNVNAYRGAYGADAGDPAQYADLGLLIRT 238

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
           +++I+G+ R+R+TTSHP + SD L+ A+ D+  L   LHLPVQ+GSDRIL +M R +TA 
Sbjct: 239 IAQIEGIGRIRFTTSHPLEFSDSLVDAYRDVPQLANCLHLPVQAGSDRILSAMKRGYTAL 298

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
           E++  I ++R+VRPDI+ISSDFIVGFPGET+ DF  TM L++ +G+ Q+FSF YS R GT
Sbjct: 299 EFKSRIRKLRAVRPDISISSDFIVGFPGETEADFEKTMKLIEDVGFDQSFSFVYSRRPGT 358

Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRS 432
           P S++ +   E VK  RL  LQ  +     S + + VG +  VL+E    ++  +L G+S
Sbjct: 359 PASDLQDDTPETVKQARLARLQAHISAHAASISQSMVGSVQRVLVEGPSRRDPNELTGKS 418

Query: 433 PWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
             ++ V        IG  + V IT+   ++L G +
Sbjct: 419 ENMRPVNFPGNPRLIGQFVDVLITEAMSNSLRGRI 453


>gi|320638111|gb|EFX07875.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Escherichia
           coli O157:H7 str. G5101]
          Length = 474

 Score =  382 bits (981), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 198/448 (44%), Positives = 293/448 (65%), Gaps = 14/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS +M D+   + GY+  +  ++AD+++LNTC IREKA EKV+  
Sbjct: 3   KKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTDVAEEADVLLLNTCSIREKAQEKVFHQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK    ++  DL++ V GCVA  EGE I +R+  V+++ GPQT +RLPE++   
Sbjct: 63  LGRWKLLK----EKNPDLIIGVGGCVASQEGEHIRQRAHYVDIIFGPQTLHRLPEMINSV 118

Query: 144 RFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           R G R  VVD  +   +KF+RL        R  G TAF++I EGC+K+CT+CVVPYTRG 
Sbjct: 119 R-GDRSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTYCVVPYTRGE 172

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E+SR    ++ E  +L   GV E+ LLGQNVNAWRG+  DG   +F+DLL  ++ I G+ 
Sbjct: 173 EVSRPSDDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTTGSFADLLRLVAAIDGID 232

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHP + +D +I+ + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ +I +
Sbjct: 233 RIRFTTSHPIEFTDDIIEVYRDTPELVSFLHLPVQSGSDRILNLMGRTHTALEYKALIRK 292

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R+ RPDI ISSDFIVGFPGET +DF  TM L+  + +  ++SF +S R GTP ++M++ 
Sbjct: 293 LRAARPDIQISSDFIVGFPGETTEDFEKTMKLIADVNFDMSYSFIFSARPGTPAADMVDD 352

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVL 440
           V E  K +RL  LQ+++ +Q ++++   +G    +L+E   ++   +L GR+   + V  
Sbjct: 353 VPEEEKKQRLYILQERINQQAMAWSRRMLGTTQRILVEGTSRKSIMELSGRTENNRVVNF 412

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 IG  + V ITDV  ++L G++V
Sbjct: 413 EGTPDMIGKFVDVEITDVYPNSLRGKVV 440


>gi|319943047|ref|ZP_08017330.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Lautropia mirabilis ATCC
           51599]
 gi|319743589|gb|EFV95993.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Lautropia mirabilis ATCC
           51599]
          Length = 473

 Score =  382 bits (981), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 204/450 (45%), Positives = 282/450 (62%), Gaps = 15/450 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ +++++GCQMN YDS RM D+   ++G E  +  ++AD+++ NTC IREKA EKV+S 
Sbjct: 3   RKLYLRTFGCQMNSYDSERMADLLAETEGAELTDDPNEADIVLFNTCSIREKAQEKVFSD 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LG  R +K +R     +L++ V GCVA  EGE I+ R+P V+VV GPQT +RLPEL++R 
Sbjct: 63  LGYFRAMKAAR----PELIIGVGGCVASQEGEAIVSRAPFVDVVFGPQTLHRLPELIDRR 118

Query: 144 R-FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           R  G   VD  +   +KF+ L        RK G +AF++I EGC K+C+FCVVPYTRG E
Sbjct: 119 RQTGHSQVDIRFPEIEKFDALPP-----PRKVGASAFVSIMEGCSKYCSFCVVPYTRGEE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK--GLDGEKCTFSDLLYSLSEIKGL 260
           ISR    V+ +   L + GV E+TLLGQNVNA+ G+  G D     F+ LL  + +I G+
Sbjct: 174 ISRPFEDVLSDVITLAEQGVKEVTLLGQNVNAYLGQVEGFDA-PADFATLLDYIHDIPGI 232

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+RYTTSHPR+ ++ LI AH  L  L P +HLPVQSGSDRIL +M R +TA EYR I+ 
Sbjct: 233 ERIRYTTSHPREFTERLIDAHAQLPKLAPLVHLPVQSGSDRILAAMKRGYTALEYRSIVR 292

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           R+R+  P I +++DFIVGFPGET+ DF  T+ L + + Y  A+SF YSPR GTP +N+ +
Sbjct: 293 RLRAASPGIGLTTDFIVGFPGETEADFLKTLKLAEDLAYDDAYSFIYSPRPGTPAANLQD 352

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVV 439
           +     K ERL  LQ  +++  ++     VG    VL+E    K+  +L GR P  + V 
Sbjct: 353 ETPHEEKVERLQRLQAVVQQSSLAIARGMVGSRQRVLVEGPSRKDASELSGRCPNNRMVN 412

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELVV 469
                  IG +I V IT     TL GE V 
Sbjct: 413 FPGAPELIGQLIDVDITSAMSHTLRGEPVA 442


>gi|24372764|ref|NP_716806.1| tRNA-i(6)A37 modification enzyme MiaB [Shewanella oneidensis MR-1]
 gi|81446317|sp|Q8CX45|MIAB_SHEON RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|24346842|gb|AAN54251.1|AE015562_1 tRNA-i(6)A37 modification enzyme MiaB [Shewanella oneidensis MR-1]
          Length = 474

 Score =  382 bits (981), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 197/447 (44%), Positives = 286/447 (63%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS +M D+    QGY      ++AD+++LNTC IREKA EKV+  
Sbjct: 3   KKLHIKTWGCQMNEYDSSKMADLLGEYQGYTLTEEAEEADILLLNTCSIREKAQEKVFHQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK+    +  DL++ V GCVA  EG+ I  R+  V+++ GPQT +RLPE++E+ 
Sbjct: 63  LGRWKTLKD----KNPDLIIGVGGCVASQEGKAIKDRAQCVDIIFGPQTLHRLPEMIEQV 118

Query: 144 RFG-KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           R G K V+D  +   +KF+RL        R  G TAF++I EGC K+C+FCVVPYTRG E
Sbjct: 119 RRGEKAVIDVSFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCSKYCSFCVVPYTRGEE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR    ++ E  +L + GV E+ LLGQNVNA+RG   DG  CTF++LL  ++ I G+ R
Sbjct: 174 VSRPSDDIILEIAQLAEQGVREVNLLGQNVNAYRGATHDGGICTFAELLRYVAAIDGIDR 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP + +  +I  + D   L+ +LHLPVQSGSDRIL +M R H A EY+ II R+
Sbjct: 234 IRFTTSHPIEFTQDIIDVYEDTPELVSFLHLPVQSGSDRILTAMKRGHMAIEYKSIIRRL 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R  RPDI ISSDFI+GFPGET +DF  TM L++ + +  +FSF YS R GTP +++ + V
Sbjct: 294 RKARPDIQISSDFIIGFPGETQEDFADTMKLIEDVAFDHSFSFIYSARPGTPAADLPDDV 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLN 441
           D   K +RL  LQ ++ +Q + ++   +G +  +L+E    K   +L GR+   + V   
Sbjct: 354 DMEEKKQRLAILQDRITQQAMRYSRHMMGTVQRILVEGPSVKNPMELRGRTENNRVVNFE 413

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
               +IG  + V I DV  ++L G+ +
Sbjct: 414 GLPKHIGTFVDVEIVDVYTNSLRGKFI 440


>gi|114046575|ref|YP_737125.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Shewanella sp.
           MR-7]
 gi|123030839|sp|Q0HXT7|MIAB_SHESR RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|113888017|gb|ABI42068.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Shewanella sp. MR-7]
          Length = 474

 Score =  382 bits (980), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 196/447 (43%), Positives = 287/447 (64%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS +M D+    QGY      ++AD+++LNTC IREKA EKV+  
Sbjct: 3   KKLHIKTWGCQMNEYDSSKMADLLGEYQGYTLTEEAEEADILLLNTCSIREKAQEKVFHQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK+    +  DL++ V GCVA  EG+ I  R+  V+++ GPQT +RLP+++E+ 
Sbjct: 63  LGRWKTLKD----KNPDLIIGVGGCVASQEGKAIKDRAHCVDIIFGPQTLHRLPDMIEQV 118

Query: 144 RFG-KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           R G K V+D  +   +KF+RL        R  G TAF++I EGC K+C+FCVVPYTRG E
Sbjct: 119 RRGEKAVIDVSFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCSKYCSFCVVPYTRGEE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR    ++ E  +L + GV E+ LLGQNVNA+RG   DG  CTF++LL  ++ I G+ R
Sbjct: 174 VSRPSDDIILEIAQLAEQGVREVNLLGQNVNAYRGATHDGGICTFAELLRYVAAIDGIDR 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP + +  +I  + D   L+ +LHLPVQSGSDRIL +M R H A EY+ II R+
Sbjct: 234 IRFTTSHPIEFTQDIIDVYEDTPELVSFLHLPVQSGSDRILTAMKRGHMAIEYKSIIRRL 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R  RPDI ISSDFI+GFPGET +DF  TM L++ + +  +FSF YS R GTP +++ + V
Sbjct: 294 RKARPDIQISSDFIIGFPGETKEDFADTMKLIEDVAFDHSFSFIYSARPGTPAADLPDDV 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLN 441
           D   K +RL  LQ ++ +Q + ++   +G +  +L+E    K   +L GR+   + V   
Sbjct: 354 DMEEKKQRLAILQDRITQQAMRYSRHMMGTVQRILVEGPSVKNPMELRGRTENNRVVNFE 413

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
            +  +IG  + V I DV  ++L G+ +
Sbjct: 414 GQPKHIGSFVDVEIVDVYTNSLRGKFI 440


>gi|21231765|ref|NP_637682.1| hypothetical protein XCC2328 [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66768109|ref|YP_242871.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Xanthomonas
           campestris pv. campestris str. 8004]
 gi|188991239|ref|YP_001903249.1| hypothetical protein xccb100_1844 [Xanthomonas campestris pv.
           campestris str. B100]
 gi|81305914|sp|Q4UVS2|MIAB_XANC8 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|81793688|sp|Q8P8B5|MIAB_XANCP RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|229891032|sp|B0RRW2|MIAB_XANCB RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|21113472|gb|AAM41606.1| conserved hypothetical protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66573441|gb|AAY48851.1| conserved hypothetical protein [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|167732999|emb|CAP51197.1| unnamed protein product [Xanthomonas campestris pv. campestris]
          Length = 485

 Score =  382 bits (980), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 203/455 (44%), Positives = 292/455 (64%), Gaps = 17/455 (3%)

Query: 21  CIVPQRFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEK 79
            +V  + ++K++GCQMN YDS +M D+   S+G E  ++ +DAD++++NTC IREKA EK
Sbjct: 33  ALVRGKLYIKTHGCQMNEYDSAKMADVLAASEGLELTDNPEDADVVLVNTCSIREKAQEK 92

Query: 80  VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL 139
           V+S LGR + LK      G  +++ V GCVA  EGE I++R+P V++V GPQT +RLPEL
Sbjct: 93  VFSQLGRWKALKAG----GKPVIIGVGGCVASQEGEAIVKRAPYVDLVFGPQTLHRLPEL 148

Query: 140 LE-RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
           +  R   GK  VD  +   +KF+RL        R  G +AF++I EGC K+C+FCVVPYT
Sbjct: 149 IRARRESGKSQVDISFPEIEKFDRLP-----EPRADGPSAFVSIMEGCSKYCSFCVVPYT 203

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-GLD-GEKCTFSDL---LYS 253
           RG E+SR    V+ E  +L   GV EI LLGQNVNA+RG  G D GE   ++DL   + +
Sbjct: 204 RGEEVSRPFEDVLVEVAQLAAQGVREINLLGQNVNAYRGAYGADAGEPAQYADLGLLIRT 263

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
           +++I G+ R+R+TTSHP + SD L+ A+ D+  L  YLHLPVQ+GSDRIL +M R +TA 
Sbjct: 264 IAQIDGIGRIRFTTSHPLEFSDSLVDAYRDVPQLANYLHLPVQAGSDRILSAMKRGYTAL 323

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
           E++  I ++R+VRPDI+ISSDFIVGFPGETD DF  TM L++ +G+ Q+FSF YS R GT
Sbjct: 324 EFKSKIRKLRAVRPDISISSDFIVGFPGETDADFDKTMKLIEDVGFDQSFSFIYSRRPGT 383

Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRS 432
           P S++ +   + VK  RL  LQ  +       +   VG +  VL+E    ++  +L G++
Sbjct: 384 PASDLEDDTPDAVKQARLARLQAHINAHAAGISQRMVGSVQRVLVEGPSRRDANELTGKT 443

Query: 433 PWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
             ++ V        +G  + V IT+   ++L G +
Sbjct: 444 ENMRPVNFPGNPRLVGQFVDVLITEALSNSLRGRI 478


>gi|88705750|ref|ZP_01103460.1| Protein of unknown function, UPF0004 [Congregibacter litoralis
           KT71]
 gi|88700263|gb|EAQ97372.1| Protein of unknown function, UPF0004 [Congregibacter litoralis
           KT71]
          Length = 433

 Score =  382 bits (980), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 203/439 (46%), Positives = 289/439 (65%), Gaps = 17/439 (3%)

Query: 36  MNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSR 94
           MN YDS RM+D+   S G    +  DDAD+I+LNTC IREKA EKV+  LGR +NLK   
Sbjct: 1   MNEYDSARMQDLLVDSHGLVPTDREDDADVILLNTCSIREKAQEKVFHQLGRWKNLK--- 57

Query: 95  IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-ERARFGKRVVDTD 153
            ++  +L++ V GCVA  EG +I +R+P V++V GPQT +RLPE+L ER   G  VVD  
Sbjct: 58  -QKNPELIIGVGGCVASQEGADIGKRAPYVDLVFGPQTLHRLPEMLDERRDSGNLVVDIT 116

Query: 154 YSVEDKFERLS--IVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVV 211
           +   +KF+RL    VDG        +AF++I EGC K+C+FCVVPYTRG E+SR L  V+
Sbjct: 117 FPEIEKFDRLPEPSVDG-------PSAFVSIMEGCSKYCSFCVVPYTRGEEVSRPLDDVI 169

Query: 212 DEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPR 271
            E   L   GV E+ LLGQNVNA+RG+  +G+   F++LL+ ++ I G+ R+RYTTSHP 
Sbjct: 170 AEVASLAGRGVREVNLLGQNVNAYRGESHEGDIVDFAELLHFVAAIPGIDRIRYTTSHPV 229

Query: 272 DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAI 331
           + S+ LI+A+ D+  L+ +LHLPVQ+GSDR+L +M R HT  EY+  I ++R++RP+I++
Sbjct: 230 EFSEALIQAYADIPELVDHLHLPVQAGSDRVLANMKRGHTVLEYKSKIRKLRAIRPNISL 289

Query: 332 SSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERL 391
           SSDFI+GFPGET+ DF ATM L+D IG+  +FSF YS R GTP S++ +  DE  K  RL
Sbjct: 290 SSDFIIGFPGETEADFAATMKLIDDIGFDMSFSFIYSARPGTPASDLKDDTDEETKKSRL 349

Query: 392 LCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLNSKNHN-IGD 449
             LQ ++ +Q  + +   VG    +L+     K+ G+L GR+   + V  ++ +H  IG 
Sbjct: 350 HILQARINQQAQAISRHMVGSRQRILVSGPSRKDPGQLQGRTENNRVVNFSADDHGLIGQ 409

Query: 450 IIKVRITDVKISTLYGELV 468
            + V I +   ++L GEL+
Sbjct: 410 FVDVTIGEALPNSLRGELI 428


>gi|332342008|gb|AEE55342.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli UMNK88]
          Length = 474

 Score =  382 bits (980), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 198/448 (44%), Positives = 293/448 (65%), Gaps = 14/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS +M D+   + GY+  +  ++AD+++LNTC IREKA EKV+  
Sbjct: 3   KKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTDVAEEADVLLLNTCSIREKAQEKVFHQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK    ++  DL++ V GCVA  EGE I +R+  V+++ GPQT +RLP+++   
Sbjct: 63  LGRWKLLK----EKNPDLIIGVGGCVASQEGEHIRQRAHYVDIIFGPQTLHRLPKMINSV 118

Query: 144 RFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           R G R  VVD  +   +KF+RL        R  G TAF++I EGC+K+CT+CVVPYTRG 
Sbjct: 119 R-GDRSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTYCVVPYTRGE 172

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E+SR    ++ E  +L   GV E+ LLGQNVNAWRG+  DG   +F+DLL  ++ I G+ 
Sbjct: 173 EVSRPSDDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTTGSFADLLRLVAAIDGID 232

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHP + +D +I+ + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II +
Sbjct: 233 RIRFTTSHPIEFTDDIIEVYRDTPELVSFLHLPVQSGSDRILNLMGRTHTALEYKAIIRK 292

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R+ RPDI ISSDFIVGFPGET +DF  TM L+  + +  ++SF +S R GTP ++M++ 
Sbjct: 293 LRAARPDIQISSDFIVGFPGETTEDFEKTMKLIADVNFDMSYSFIFSARPGTPAADMVDD 352

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVL 440
           V E  K +RL  LQ+++ +Q ++++   +G    +L+E   ++   +L GR+   + V  
Sbjct: 353 VPEEEKKQRLYILQERINQQAMAWSRRMLGTTQRILVEGTSRKSIMELSGRTENNRVVNF 412

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 IG  + V ITDV  ++L G++V
Sbjct: 413 EGTPDMIGKFVDVEITDVYPNSLRGKVV 440


>gi|323976357|gb|EGB71447.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli TW10509]
          Length = 474

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 198/448 (44%), Positives = 293/448 (65%), Gaps = 14/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS +M D+   + G++  +  ++AD+++LNTC IREKA EKV+  
Sbjct: 3   KKLHIKTWGCQMNEYDSSKMADLLDATHGFQLTDVAEEADVLLLNTCSIREKAQEKVFHQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK    ++  DL++ V GCVA  EGE I +R+  V+++ GPQT +RLPE++   
Sbjct: 63  LGRWKLLK----EKNPDLIIGVGGCVASQEGEHIRQRAHYVDIIFGPQTLHRLPEMINSV 118

Query: 144 RFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           R G R  VVD  +   +KF+RL        R  G TAF++I EGC+K+CT+CVVPYTRG 
Sbjct: 119 R-GDRSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTYCVVPYTRGE 172

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E+SR    ++ E  +L   GV E+ LLGQNVNAWRG+  DG   +F+DLL  ++ I G+ 
Sbjct: 173 EVSRPSDDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTTGSFADLLRLVAAIDGID 232

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHP + +D +I+ + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II +
Sbjct: 233 RIRFTTSHPIEFTDDIIEVYRDTPELVSFLHLPVQSGSDRILNLMGRTHTALEYKAIIRK 292

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R+ RPDI ISSDFIVGFPGET +DF  TM L+  + +  ++SF +S R GTP ++M++ 
Sbjct: 293 LRAARPDIQISSDFIVGFPGETTEDFEKTMKLIADVNFDMSYSFIFSARPGTPAADMVDD 352

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVL 440
           V E  K +RL  LQ+++ +Q ++++   +G    +L+E   ++   +L GR+   + V  
Sbjct: 353 VPEEEKKQRLYILQERINQQAMAWSRRMLGTTQRILVEGTSRKSIMELSGRTENNRVVNF 412

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 IG  + V ITDV  ++L G++V
Sbjct: 413 EGTPDMIGKFVDVEITDVYPNSLRGKVV 440


>gi|299067908|emb|CBJ39122.1| isopentenyl-adenosine A37 tRNA methylthiolase, Fe-S protein
           [Ralstonia solanacearum CMR15]
          Length = 452

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 204/456 (44%), Positives = 291/456 (63%), Gaps = 20/456 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ F+K++GCQMN YDS +M D+   ++G    ++ +DAD+I+ NTC +REKA EKV+S 
Sbjct: 2   KKVFIKTFGCQMNEYDSDKMADVLNAAEGLVPTDTPEDADVILFNTCSVREKAQEKVFSD 61

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE-R 142
           LGR++ LK        DL+V V GCVA  EG  I+ R+P V+VV GPQT +RLPEL++ R
Sbjct: 62  LGRVKALK----ARNPDLVVGVGGCVASQEGASIVARAPYVDVVFGPQTLHRLPELIDAR 117

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            R G+  VD  +   +KF+ L        R  G +AF++I EGC K+C++CVVPYTRG E
Sbjct: 118 RRTGRPQVDVSFPEIEKFDHLPPA-----RVEGPSAFVSIMEGCSKYCSYCVVPYTRGEE 172

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-GLDGEKCTFSDLLYSLSEIKGLV 261
           +SR    V+ E   L + GV E+TLLGQNVNA+ GK G   E+  F+ LL  ++EI G+ 
Sbjct: 173 VSRPFEDVLAEVAGLAEQGVREVTLLGQNVNAYIGKMGDTSERADFALLLEYVAEIPGIE 232

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+RYTTSHP++ +  LI+A+     L+ +LHLPVQ GSDRIL +M R +T  EY+ II +
Sbjct: 233 RIRYTTSHPKEFTARLIEAYATNRKLVDHLHLPVQHGSDRILMAMKRGYTVLEYKSIIRK 292

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R++RPD+++++DFIVGFPGETD DF  TMDLV +IGY  +FSF YSPR GTP +N+ + 
Sbjct: 293 LRAIRPDLSVATDFIVGFPGETDADFAKTMDLVHEIGYDNSFSFIYSPRPGTPAANLHDD 352

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSP------- 433
               VK ERL  LQ  +       ++  VG +  +L+E    K+  +L GR+        
Sbjct: 353 TPHAVKLERLKHLQATIDANMARISEGMVGSVQRILVEGPSRKDPSELHGRTENNRVVNF 412

Query: 434 WLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
            L  +    ++  +G ++ VRI      +L GE+VV
Sbjct: 413 ALPDLSQARRDQLVGQMLDVRIVHAFPHSLRGEVVV 448


>gi|229890690|sp|A8AJE9|MIAB_CITK8 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
          Length = 474

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 196/448 (43%), Positives = 292/448 (65%), Gaps = 14/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS +M D+   + GY+     ++AD+++LNTC IREKA EKV+  
Sbjct: 3   KKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTEVAEEADVLLLNTCSIREKAQEKVFHQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK    ++  DL++ V GCVA  EG+ I +R+  V+++ GPQT +RLPE++   
Sbjct: 63  LGRWKLLK----EKNPDLIIGVGGCVASQEGDHIRQRAHYVDIIFGPQTLHRLPEMINSV 118

Query: 144 RFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           R G R  VVD  +   +KF+RL        R  G TAF++I EGC+K+CT+CVVPYTRG 
Sbjct: 119 R-GDRSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTYCVVPYTRGE 172

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E+SR    ++ E  +L   GV E+ LLGQNVNAWRG+  DG   +F+DLL  ++ I G+ 
Sbjct: 173 EVSRPSDDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTTGSFADLLRLVAAIDGID 232

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHP + +D +I+ + D   L+ +LHLPVQSG+DR+L  M R HTA EY+ II +
Sbjct: 233 RIRFTTSHPIEFTDDIIEVYRDTPELVSFLHLPVQSGADRVLNLMGRTHTALEYKAIIRK 292

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R+ RPDI ISSDFIVGFPGET  DF  TM L+  + +  ++SF +S R GTP ++M++ 
Sbjct: 293 LRAARPDIQISSDFIVGFPGETTQDFEQTMKLIADVNFDMSYSFIFSARPGTPAADMVDD 352

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVL 440
           V E  K +RL  LQ+++ +Q ++++   +G +  +L+E   ++   +L GR+   + V  
Sbjct: 353 VPEEEKKQRLYILQERINQQAMAWSRRMLGTVQRILVEGTSRKSIMELSGRTENNRVVNF 412

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 IG  + V ITDV  ++L G++V
Sbjct: 413 EGTPEMIGKFVDVEITDVYTNSLRGKVV 440


>gi|269139970|ref|YP_003296671.1| rRNA modification protein [Edwardsiella tarda EIB202]
 gi|267985631|gb|ACY85460.1| rRNA modification protein [Edwardsiella tarda EIB202]
 gi|304559803|gb|ADM42467.1| tRNA-i(6)A37 methylthiotransferase [Edwardsiella tarda FL6-60]
          Length = 474

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 198/447 (44%), Positives = 290/447 (64%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS ++ D+  S  G E  ++ +DAD+++LNTC IREKA EKV+  
Sbjct: 3   KKLHIKTWGCQMNEYDSSKIADLLGSTHGLELTDNAEDADVLLLNTCSIREKAQEKVFHQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK ++     DL++ V GCVA  EGE I  R+  V+++ GPQT +RLPE+++ A
Sbjct: 63  LGRWKMLKEAK----PDLIIGVGGCVASQEGEHIRERASCVDIIFGPQTLHRLPEMIDSA 118

Query: 144 RFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           R     VVD  +   +KF+RL        R  G TAF++I EGC+K+CT+CVVPYTRG E
Sbjct: 119 RSSHGPVVDVSFPEIEKFDRLP-----EPRADGATAFVSIMEGCNKYCTYCVVPYTRGAE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR    V+ E  +L   GV E+ LLGQNVNA+RG   DG  C+F++LL  ++ I G+ R
Sbjct: 174 VSRPCDDVLFEIAQLAAQGVREVNLLGQNVNAYRGATFDGGICSFAELLRLVAAIDGIDR 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP + SD +I  + D   L+ +LHLPVQSGSDR+L  M R HTA EY+ II ++
Sbjct: 234 IRFTTSHPIEFSDDIIAVYEDTPELVSFLHLPVQSGSDRVLNLMKRTHTALEYKAIIRKL 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R  RPDI ISSDFIVGFPGET  DF  TM L+ ++ +  ++SF +S R GTP ++M++ V
Sbjct: 294 RRARPDIQISSDFIVGFPGETQQDFEQTMQLIAEVDFDMSYSFIFSARPGTPAADMVDDV 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441
            E  K +RL  LQ+++ +Q + ++   +G +  +L+E   ++   +L GR+   + V   
Sbjct: 354 AEEEKKQRLYILQERINQQAMRYSRRMLGTVQRILVEGTSRKNVMELSGRTENNRVVNFA 413

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
            +   IG  + V IT+V  ++L G +V
Sbjct: 414 GQPEMIGRFVDVEITEVLPNSLRGVVV 440


>gi|300927231|ref|ZP_07142963.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli MS
           182-1]
 gi|301329194|ref|ZP_07222185.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli MS 78-1]
 gi|300416797|gb|EFK00108.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli MS
           182-1]
 gi|300844482|gb|EFK72242.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli MS 78-1]
          Length = 474

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 198/448 (44%), Positives = 293/448 (65%), Gaps = 14/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS +M D+   + GY+  +  ++AD+++LNTC IREKA EKV+  
Sbjct: 3   KKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTDVAEEADVLLLNTCSIREKAQEKVFHQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK    ++  DL++ V GCVA  EGE I +R+  V+++ GPQT +RLPE++   
Sbjct: 63  LGRWKLLK----EKNPDLIIGVGGCVASQEGEHIRQRAHYVDIIFGPQTLHRLPEMINSV 118

Query: 144 RFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           R G R  VVD  +   +KF+RL        R  G TAF++I EGC+K+CT+CVVPYTRG 
Sbjct: 119 R-GDRSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTYCVVPYTRGE 172

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E+SR    ++ E  +L   GV E+ LLGQNVNAWRG+  DG   +F++LL  ++ I G+ 
Sbjct: 173 EVSRPSDDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTTGSFANLLRLVAAIDGID 232

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHP + +D +I+ + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II +
Sbjct: 233 RIRFTTSHPIEFTDDIIEVYRDTPELVSFLHLPVQSGSDRILNLMGRTHTALEYKAIIRK 292

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R+ RPDI ISSDFIVGFPGET +DF  TM L+  + +  ++SF +S R GTP ++M++ 
Sbjct: 293 LRAARPDIQISSDFIVGFPGETTEDFEKTMKLIADVNFDMSYSFIFSARPGTPAADMVDD 352

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVL 440
           V E  K +RL  LQ+++ +Q ++++   +G    +L+E   ++   +L GR+   + V  
Sbjct: 353 VPEEEKKQRLYILQERINQQAMAWSRRMLGTTQRILVEGTSRKSIMELSGRTENNRVVNF 412

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 IG  + V ITDV  ++L G++V
Sbjct: 413 EGTPDMIGKFVDVEITDVYPNSLRGKVV 440


>gi|238752614|ref|ZP_04614087.1| hypothetical protein yrohd0001_990 [Yersinia rohdei ATCC 43380]
 gi|238709205|gb|EEQ01450.1| hypothetical protein yrohd0001_990 [Yersinia rohdei ATCC 43380]
          Length = 478

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 200/447 (44%), Positives = 286/447 (63%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS +M D+  S  GY+   + ++ADL++LNTC IREKA EKV+S 
Sbjct: 7   KKLHIKTWGCQMNEYDSSKMADLLASTHGYQLTENPEEADLLLLNTCSIREKAQEKVFSL 66

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LG  + LK    ++  +L++ V GCVA  EGE + +R+P V+VV GPQT +RLPE++   
Sbjct: 67  LGHWKLLK----EKNPELIIGVGGCVASQEGEHLRQRAPCVDVVFGPQTLHRLPEMINHV 122

Query: 144 RFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           +     +VD  +   +KF+RL        R  G TAF++I EGC+K+CTFCVVPYTRG E
Sbjct: 123 QGSHSPIVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTFCVVPYTRGEE 177

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR    ++ E  +L   GV E+ LLGQNVNA+RG   DG+ C+F++LL  ++ I G+ R
Sbjct: 178 VSRPSDDILFEIAQLAAQGVREVNLLGQNVNAYRGATYDGDICSFAELLRLVAAIDGIDR 237

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP + +D +I  + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II ++
Sbjct: 238 VRFTTSHPIEFTDDIIDVYRDTPELVSFLHLPVQSGSDRILTMMKRAHTALEYKAIIRKL 297

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R  RPDI ISSDFI+GFPGET  DF  TM LV  I +  ++SF YS R GTP +++ + V
Sbjct: 298 RQARPDIQISSDFIIGFPGETQLDFEQTMKLVADIRFDTSYSFIYSSRPGTPAADLPDDV 357

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441
            E  K +RL  LQ+++ +Q +  +   VG +  +L+E   ++   +L GR+   + V   
Sbjct: 358 SEEEKKQRLHILQQRITQQAMEISREMVGTVQRILVEGTSRKNVMELAGRTENNRVVNFE 417

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                IG  + V I DV  S+L G L+
Sbjct: 418 GMPELIGKFVDVEIIDVHASSLRGVLL 444


>gi|320016175|gb|ADV99746.1| isopentenyl-adenosine A37 tRNA methylthiolase [Yersinia pestis
           biovar Medievalis str. Harbin 35]
          Length = 474

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 201/447 (44%), Positives = 285/447 (63%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS +M D+  S  GY+     ++ADL++LNTC IREKA EKV+S 
Sbjct: 3   KKLHIKTWGCQMNEYDSSKMADLLASTHGYQLTTIPEEADLLLLNTCSIREKAQEKVFSL 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LG+ + LK    ++   L++ V G VA  EGE++ +R+P V+V+ GPQT +RLPE++   
Sbjct: 63  LGQWKLLK----EKNPQLIIGVGGYVASQEGEQLRQRAPCVDVIFGPQTLHRLPEMINHV 118

Query: 144 R-FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           +     VVD  +   +KF+RL        R  G TAF++I EGC+K+CTFCVVPYTRG E
Sbjct: 119 QGTNSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTFCVVPYTRGEE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR    ++ E  +L   GV E+ LLGQNVNA+RG   DG+ C+F++LL  ++ I G+ R
Sbjct: 174 VSRPSDDILFEIAQLAAQGVREVNLLGQNVNAYRGATYDGDICSFAELLRLVAAIDGIDR 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP + +D +I  + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II ++
Sbjct: 234 VRFTTSHPIEFTDDIIDVYRDTPELVSFLHLPVQSGSDRILTMMKRAHTALEYKAIIRKL 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R  RPDI ISSDFIVGFPGET  DF  TM LV  I +  ++SF YSPR GTP +++   V
Sbjct: 294 RQARPDIQISSDFIVGFPGETQQDFEQTMKLVADIHFDTSYSFIYSPRPGTPAADLPNNV 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441
            E  K +RL  LQ+++ +Q +  +   VG +  VL+E   ++   +L GR+   + V   
Sbjct: 354 SEEEKKQRLHILQQRISQQAMEISRKMVGTVQRVLVEGTSRKNVMELAGRTENNRVVNFE 413

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                IG  + V I +V  S+L G L+
Sbjct: 414 GSPDMIGKFVDVEIVNVYASSLRGILL 440


>gi|17545250|ref|NP_518652.1| hypothetical protein RSc0531 [Ralstonia solanacearum GMI1000]
 gi|81506472|sp|Q8Y206|MIAB_RALSO RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|17427541|emb|CAD14059.1| conserved hypothetical protein [Ralstonia solanacearum GMI1000]
          Length = 457

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 204/455 (44%), Positives = 290/455 (63%), Gaps = 20/455 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ F+K++GCQMN YDS +M D+   ++G    ++ +DAD+I+ NTC +REKA EKV+S 
Sbjct: 2   KKVFIKTFGCQMNEYDSDKMADVLNAAEGLVPTDTPEDADVILFNTCSVREKAQEKVFSD 61

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE-R 142
           LGR++ LK        DL+V V GCVA  EG  I+ R+P V+VV GPQT +RLPEL++ R
Sbjct: 62  LGRVKALK----ARNPDLVVGVGGCVASQEGASIVARAPYVDVVFGPQTLHRLPELIDAR 117

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            R G+  VD  +   +KF+ L        R  G +AF++I EGC K+C++CVVPYTRG E
Sbjct: 118 RRTGRPQVDVSFPEIEKFDHLPPA-----RVEGPSAFVSIMEGCSKYCSYCVVPYTRGEE 172

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-GLDGEKCTFSDLLYSLSEIKGLV 261
           +SR    V+ E   L + GV E+TLLGQNVNA+ GK G   E+  F+ LL  ++EI G+ 
Sbjct: 173 VSRPFEDVLAEVAGLAEQGVREVTLLGQNVNAYIGKMGGTSERADFALLLEYVAEIPGIE 232

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+RYTTSHP++ +  LI+A+     L+ +LHLPVQ GSDRIL +M R +T  EY+ II +
Sbjct: 233 RIRYTTSHPKEFTARLIEAYATNRKLVDHLHLPVQHGSDRILMAMKRGYTVLEYKSIIRK 292

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R++RPDI+I++DFIVGFPGETD DF  TMDLV +IGY  +FSF YSPR GTP +N+ + 
Sbjct: 293 LRAIRPDISIATDFIVGFPGETDADFAKTMDLVHEIGYDNSFSFIYSPRPGTPAANLHDD 352

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSP------- 433
               VK ERL  LQ  +       ++  VG +  +L+E    K+  +L GR+        
Sbjct: 353 TPHAVKLERLKHLQATIDANMARISEGMVGSVQRILVEGPSRKDPSELHGRTENNRVVNF 412

Query: 434 WLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            L  +    ++  +G ++ VRI      +L G++V
Sbjct: 413 ALPDLPQARRDQLVGQMLDVRIVHAYPHSLRGDVV 447


>gi|301155952|emb|CBW15422.1| isopentenyl-adenosine A37 tRNA methylthiolase [Haemophilus
           parainfluenzae T3T1]
          Length = 461

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 201/436 (46%), Positives = 286/436 (65%), Gaps = 12/436 (2%)

Query: 36  MNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSR 94
           MN YDS +M D+   + G E  +  ++AD+++LNTC IREKA EKV+  LGR + LK   
Sbjct: 1   MNEYDSSKMADLLLNTHGLELTDIPEEADVLLLNTCSIREKAQEKVFHQLGRWKELK--- 57

Query: 95  IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR-VVDTD 153
            K+  +L++ V GCVA  EGE I  R+P V++V GPQT +RLPE++ + R GK  VVD  
Sbjct: 58  -KQNPNLVIGVGGCVASQEGEHIRHRAPYVDIVFGPQTLHRLPEMINQIRGGKSSVVDVS 116

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           +   +KF+RL        R  G TAF++I EGC+K+CT+CVVPYTRG E+SR +  V+ E
Sbjct: 117 FPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTYCVVPYTRGEEVSRPVDDVLFE 171

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
             +L + GV EI LLGQNVNA+RG   DG  CTF++LL  ++ I G+ RLR+TTSHP + 
Sbjct: 172 IAQLAEQGVREINLLGQNVNAYRGPTFDGGICTFAELLRLVASIDGIDRLRFTTSHPIEF 231

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
           +D +I  + D   L+ ++HLPVQ+GSDRIL  M R HTA EY+ II ++R+VRP+I ISS
Sbjct: 232 TDDIIDVYRDTPELVDFVHLPVQAGSDRILTMMKRGHTALEYKSIIRKLRAVRPNIQISS 291

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLC 393
           DFIVGFPGET ++F  TM+L+ ++ +  +FSF YS R GTP ++M + V E  K +RL  
Sbjct: 292 DFIVGFPGETKEEFEQTMNLIAQVNFDMSFSFIYSARPGTPAADMPDDVTEEEKKQRLYL 351

Query: 394 LQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNSKNHNIGDIIK 452
           LQ+++ +Q   ++   +G    VL+E   K+   +L GR+   + V        IG  + 
Sbjct: 352 LQERINQQAAQYSRRMLGTEQRVLVEGPSKKDIMELTGRTENNRIVNFQGSPDMIGKFVD 411

Query: 453 VRITDVKISTLYGELV 468
           ++ITDV  ++L GE+V
Sbjct: 412 IKITDVYTNSLRGEVV 427


>gi|157146729|ref|YP_001454048.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Citrobacter
           koseri ATCC BAA-895]
 gi|157083934|gb|ABV13612.1| hypothetical protein CKO_02502 [Citrobacter koseri ATCC BAA-895]
          Length = 488

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 196/448 (43%), Positives = 292/448 (65%), Gaps = 14/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS +M D+   + GY+     ++AD+++LNTC IREKA EKV+  
Sbjct: 17  KKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTEVAEEADVLLLNTCSIREKAQEKVFHQ 76

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK    ++  DL++ V GCVA  EG+ I +R+  V+++ GPQT +RLPE++   
Sbjct: 77  LGRWKLLK----EKNPDLIIGVGGCVASQEGDHIRQRAHYVDIIFGPQTLHRLPEMINSV 132

Query: 144 RFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           R G R  VVD  +   +KF+RL        R  G TAF++I EGC+K+CT+CVVPYTRG 
Sbjct: 133 R-GDRSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTYCVVPYTRGE 186

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E+SR    ++ E  +L   GV E+ LLGQNVNAWRG+  DG   +F+DLL  ++ I G+ 
Sbjct: 187 EVSRPSDDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTTGSFADLLRLVAAIDGID 246

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHP + +D +I+ + D   L+ +LHLPVQSG+DR+L  M R HTA EY+ II +
Sbjct: 247 RIRFTTSHPIEFTDDIIEVYRDTPELVSFLHLPVQSGADRVLNLMGRTHTALEYKAIIRK 306

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R+ RPDI ISSDFIVGFPGET  DF  TM L+  + +  ++SF +S R GTP ++M++ 
Sbjct: 307 LRAARPDIQISSDFIVGFPGETTQDFEQTMKLIADVNFDMSYSFIFSARPGTPAADMVDD 366

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVL 440
           V E  K +RL  LQ+++ +Q ++++   +G +  +L+E   ++   +L GR+   + V  
Sbjct: 367 VPEEEKKQRLYILQERINQQAMAWSRRMLGTVQRILVEGTSRKSIMELSGRTENNRVVNF 426

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 IG  + V ITDV  ++L G++V
Sbjct: 427 EGTPEMIGKFVDVEITDVYTNSLRGKVV 454


>gi|319778544|ref|YP_004129457.1| tRNA-i(6)A37 methylthiotransferase [Taylorella equigenitalis MCE9]
 gi|317108568|gb|ADU91314.1| tRNA-i(6)A37 methylthiotransferase [Taylorella equigenitalis MCE9]
          Length = 469

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 208/464 (44%), Positives = 299/464 (64%), Gaps = 18/464 (3%)

Query: 14  VSQIVDQCIV-----PQRFFVKSYGCQMNVYDSLRMEDMFFSQ-GYERVNSMDDADLIVL 67
            SQ +D+  +      ++ ++K++GCQMN YDS +M D+  ++ G E  ++ +DAD+I+L
Sbjct: 15  ASQFIDEKPIHFPAGAKKLYIKTFGCQMNEYDSEKMADVLHAEKGLELTDNPEDADVILL 74

Query: 68  NTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVV 127
           NTC IREKA EKV+S LGRI    N   K+  +LL+ V GCVA  EG  IL+R+P V+++
Sbjct: 75  NTCSIREKAQEKVFSDLGRI----NLLKKKKPELLIGVGGCVASQEGATILQRAPYVDII 130

Query: 128 VGPQTYYRLPELLE-RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGC 186
            GPQT +RLPEL+E +   G+  VD  +   +KF+ L        R  G TAF++I EGC
Sbjct: 131 FGPQTLHRLPELIEQKESSGRAQVDVSFPEIEKFDHLPPA-----RINGPTAFVSIMEGC 185

Query: 187 DKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-GLDGEKC 245
            K+C++CVVPYTRG EISR L  V+ E   L D GV EI LLGQNVNA+RG  G DGE  
Sbjct: 186 SKYCSYCVVPYTRGEEISRPLEDVLIEVADLADQGVKEINLLGQNVNAYRGTVGEDGEIA 245

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
            F+ LL  + +I G+ R+RY TSHP++M+  LI+AH  L  L+P+LHLPVQ+GSDR+L +
Sbjct: 246 DFAMLLELIHDIPGVERIRYITSHPKEMTKRLIEAHAKLPKLVPFLHLPVQAGSDRVLAA 305

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           M R +T+ EY+ ++  +   RP + +SSDFIVGFPGET+DDF AT+ L+  +    +FSF
Sbjct: 306 MKRGYTSLEYKSVVRSLYKARPGLTLSSDFIVGFPGETEDDFEATLKLIKDLNIDTSFSF 365

Query: 366 KYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-E 424
            YS R GTP +++ +     VK +RL  LQ  + +Q   F++  +G    +L+E   K +
Sbjct: 366 IYSRRPGTPAADLPDDTPYEVKLDRLQRLQALVNKQAKEFSEKMLGTEQIILVEGFSKRD 425

Query: 425 KGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
             +L+GR+   + V      + IG ++ VRIT+V  ++L GELV
Sbjct: 426 SNELMGRTENNRIVNFKGSENLIGQMVPVRITEVYTNSLRGELV 469


>gi|15599175|ref|NP_252669.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Pseudomonas
           aeruginosa PAO1]
 gi|107103498|ref|ZP_01367416.1| hypothetical protein PaerPA_01004568 [Pseudomonas aeruginosa PACS2]
 gi|116052019|ref|YP_789138.1| hypothetical protein PA14_12350 [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218889737|ref|YP_002438601.1| hypothetical protein PLES_09951 [Pseudomonas aeruginosa LESB58]
 gi|254236873|ref|ZP_04930196.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
 gi|254242666|ref|ZP_04935988.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
 gi|296387492|ref|ZP_06876967.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Pseudomonas
           aeruginosa PAb1]
 gi|313109420|ref|ZP_07795380.1| hypothetical protein PA39016_001790020 [Pseudomonas aeruginosa
           39016]
 gi|12230974|sp|Q51470|MIAB_PSEAE RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|122261166|sp|Q02SE8|MIAB_PSEAB RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|9950171|gb|AAG07367.1|AE004816_3 conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
 gi|115587240|gb|ABJ13255.1| conserved hypothetical protein [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126168804|gb|EAZ54315.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
 gi|126196044|gb|EAZ60107.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
 gi|218769960|emb|CAW25722.1| conserved hypothetical protein [Pseudomonas aeruginosa LESB58]
 gi|310881882|gb|EFQ40476.1| hypothetical protein PA39016_001790020 [Pseudomonas aeruginosa
           39016]
          Length = 446

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 202/448 (45%), Positives = 283/448 (63%), Gaps = 13/448 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ F++++GCQMN YDS RM D+    Q  E   +  +AD+I+LNTC IREKA EKV+S 
Sbjct: 3   KKLFIETHGCQMNEYDSSRMADLLGEHQALEVTENAAEADVILLNTCSIREKAQEKVFSK 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LG  R LK    ++  DL++ V GCVA  EG  I  R+P V+VV GPQT +RLPE+++ A
Sbjct: 63  LGMWRELK----QQNPDLVIGVGGCVASQEGAAIRERAPYVDVVFGPQTLHRLPEMIDAA 118

Query: 144 RFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           R  ++  VD  +   +KF+RL        R  G TAF+++ EGC K+C+FCVVPYTRG E
Sbjct: 119 RSTRKPQVDVSFPEIEKFDRLP-----EPRVDGPTAFVSVMEGCSKYCSFCVVPYTRGEE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR    V+ E   L +NGV E+TLLGQNVN +RG   DG    F++LL  ++ + G+ R
Sbjct: 174 VSRPFDDVIAEVIHLAENGVREVTLLGQNVNGFRGLTHDGRLADFAELLRVVAAVDGIER 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +RYTTSHP + SD LI+AH ++  L+ ++HLPVQSGSDR+L +M R HT  EY+  I ++
Sbjct: 234 IRYTTSHPLEFSDALIQAHAEVPELVKFIHLPVQSGSDRVLAAMKRNHTVLEYKSRIRKL 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           ++  PDI ISSDFIVGFPGET+ DF  TM LV+ +G+  +FSF YS R GTP +++ + +
Sbjct: 294 KAAVPDICISSDFIVGFPGETEKDFEQTMKLVEDVGFDFSFSFIYSARPGTPAADLADDL 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLN 441
            E VK +RL  LQ ++ +Q    +   VG    +L+     K+ G L GR+   + V   
Sbjct: 354 PEEVKKQRLQILQSRIHQQGYEISRRMVGSTQRILVTDFSKKDPGMLQGRTENNRIVNFR 413

Query: 442 SKNHN-IGDIIKVRITDVKISTLYGELV 468
             N   IG   +V I D    +L G L+
Sbjct: 414 CDNPRLIGQFAQVHIDDALPHSLRGTLI 441


>gi|268590389|ref|ZP_06124610.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Providencia rettgeri DSM
           1131]
 gi|291314302|gb|EFE54755.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Providencia rettgeri DSM
           1131]
          Length = 476

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 196/448 (43%), Positives = 293/448 (65%), Gaps = 14/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ ++K++GCQMN YDS +M  +   + GY+     ++ADL++LNTC IREKA EKV+  
Sbjct: 5   KKLYIKTWGCQMNEYDSSKMVSLLENTHGYQLTEVAEEADLLLLNTCSIREKAQEKVFHQ 64

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR +  K+    +  D+++ V GCVA  EG+ I +R+P V++V GPQT +RLPE++ + 
Sbjct: 65  LGRWKFFKD----KNPDIIIGVGGCVASQEGDFIRQRAPSVDIVFGPQTLHRLPEMINQV 120

Query: 144 RFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           + G R  V+D  +   +KF+RL        R  G TAF++I EGC+K+CTFCVVPYTRG 
Sbjct: 121 Q-GTRSPVIDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTFCVVPYTRGE 174

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E+SR    ++ E  +L   GV E+ LLGQNVNA+RG+  DGE C+F++LL  ++ I G+ 
Sbjct: 175 EVSRPCDDILFEIAQLAAQGVREVNLLGQNVNAYRGETFDGEICSFAELLRLVAAIDGID 234

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHP + +D +I+ + D   L+ +LHLPVQSGSDR+L  M R HTA EY+ II +
Sbjct: 235 RVRFTTSHPIEFTDDIIEVYRDTPELVSFLHLPVQSGSDRVLTMMKRAHTALEYKAIIRK 294

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R  RP I ISSDFIVGFPGET +DF  TM L+  + +  ++SF YS R GTP +++ + 
Sbjct: 295 LREARPGILISSDFIVGFPGETTEDFEKTMKLIADVNFDMSYSFVYSARPGTPAADLPDD 354

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVL 440
           V E+ K +RL  LQ+++ +Q +SF+   VG +  +L+E   ++   +L GR+   + V  
Sbjct: 355 VTEDEKKQRLYLLQQRINQQALSFSRQMVGTVQRILVEGTSRKNVMELSGRTENNRVVNF 414

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 IG  + V I DV  ++L G+++
Sbjct: 415 EGTPDMIGKFVDVEIVDVYTNSLRGKVI 442


>gi|320183045|gb|EFW57910.1| tRNA-i(6)A37 methylthiotransferase [Shigella flexneri CDC 796-83]
          Length = 474

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 198/448 (44%), Positives = 292/448 (65%), Gaps = 14/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS +M D+   + GY+  +  ++AD+++LNTC IREKA EKV+  
Sbjct: 3   KKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTDVAEEADVLLLNTCSIREKAQEKVFHQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK    ++  DL++ V GCVA  EGE I +R+  V+++ GPQT +RLPE++   
Sbjct: 63  LGRWKLLK----EKNPDLIIGVGGCVASQEGEHIRQRAHYVDIIFGPQTLHRLPEMINSV 118

Query: 144 RFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           R G R  VVD  +   +KF+RL        R  G TAF++I EGC+K+CT+CVVPYTRG 
Sbjct: 119 R-GDRSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTYCVVPYTRGE 172

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E+SR    ++ E  +L   GV E+ LLGQNVNAWRG+  DG   +F+DLL  ++ I G+ 
Sbjct: 173 EVSRPSDDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGSTGSFADLLRLVAAIDGID 232

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHP + +D +I+ + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II +
Sbjct: 233 RIRFTTSHPIEFTDDIIEVYRDTPELVSFLHLPVQSGSDRILNLMGRTHTALEYKAIIRK 292

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R+ RPDI ISSDFIVGFP ET +DF  TM L+  + +  ++SF +S R GTP ++M++ 
Sbjct: 293 LRAARPDIQISSDFIVGFPSETTEDFEKTMKLIADVNFDMSYSFIFSARPGTPAADMVDD 352

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVL 440
           V E  K +RL  LQ+++ +Q ++++   +G    +L+E   ++   +L GR+   + V  
Sbjct: 353 VPEEEKKQRLYILQERINQQAMAWSRRMLGTTQRILVEGTSRKSIMELSGRTENNRVVNF 412

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 IG  + V ITDV  ++L G++V
Sbjct: 413 EGTPDMIGKFVDVEITDVYPNSLRGKVV 440


>gi|237798430|ref|ZP_04586891.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Pseudomonas
           syringae pv. oryzae str. 1_6]
 gi|331021282|gb|EGI01339.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Pseudomonas
           syringae pv. oryzae str. 1_6]
          Length = 442

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 199/448 (44%), Positives = 282/448 (62%), Gaps = 13/448 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ +++++GCQMN YDS RM D+    Q  E     +DAD+I+LNTC IRE+A ++VYS 
Sbjct: 3   KKLYIETHGCQMNEYDSSRMVDLLGEHQALEVTARAEDADVILLNTCSIRERAQDRVYSQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR R LK +      ++++ V GCVA  EG  I  R+P V+VV GPQT +RLPE+++ A
Sbjct: 63  LGRWRELKLA----NPEMVIAVGGCVASQEGAAIRDRAPYVDVVFGPQTLHRLPEMIDAA 118

Query: 144 RFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           R  +   VD  +   +KF+ L        R  G +A++++ EGC K+CTFCVVPYTRG E
Sbjct: 119 RITRLPQVDVSFPEIEKFDHLP-----EPRVDGPSAYVSVMEGCSKYCTFCVVPYTRGEE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR    V+ E   L D GV E+TLLGQNVN +RG   DG     +DL+ +++ + G+ R
Sbjct: 174 VSRPFDDVLSEVTHLADYGVREVTLLGQNVNGYRGNTHDGRVADLADLIRAVAAVDGIDR 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +RYTTSHP + SD LI+AH D+  L+ +LHLPVQSGSDRIL +M R HT  EY+  + ++
Sbjct: 234 IRYTTSHPLEFSDSLIQAHADVPQLVKHLHLPVQSGSDRILAAMKRNHTTLEYKSRLRKL 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+  P I+ISSDFIVGFPGET+ DF  TM L++ +G+  +FSF YSPR GTP +++ +  
Sbjct: 294 RAAVPGISISSDFIVGFPGETEKDFENTMKLIEDVGFDFSFSFIYSPRPGTPAADLKDDT 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLN 441
            E +K ERL  LQ +L +Q    +   VG    +L+  +  K+ G+L GR+   + V   
Sbjct: 354 PEALKKERLAALQHRLNQQGFEISRQMVGSTQRILVTDYSKKDPGELQGRTENNRIVNFR 413

Query: 442 SKNHN-IGDIIKVRITDVKISTLYGELV 468
             N   IG    V I D +  +L G L+
Sbjct: 414 CDNPQLIGQFADVHIDDAQPHSLRGSLL 441


>gi|187733108|ref|YP_001879330.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Shigella
           boydii CDC 3083-94]
 gi|229890659|sp|B2TU59|MIAB_SHIB3 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|187430100|gb|ACD09374.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Shigella boydii CDC
           3083-94]
          Length = 474

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 198/448 (44%), Positives = 292/448 (65%), Gaps = 14/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS +M D+   +  Y+  +  ++AD+++LNTC IREKA EKV+  
Sbjct: 3   KKLHIKTWGCQMNEYDSSKMADLLDATHSYQLTDVAEEADVLLLNTCSIREKAQEKVFHQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK    ++  DL++ V GCVA  EGE I +R+  V+++ GPQT +RLPE++   
Sbjct: 63  LGRWKLLK----EKNPDLIIGVGGCVASQEGEHIRQRAHYVDIIFGPQTLHRLPEMINSV 118

Query: 144 RFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           R G R  VVD  +   +KF+RL        R  G TAF++I EGC+K+CT+CVVPYTRG 
Sbjct: 119 R-GDRSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTYCVVPYTRGE 172

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E+SR    ++ E  +L   GV E+ LLGQNVNAWRG+  DG   +F+DLL  ++ I G+ 
Sbjct: 173 EVSRPSDDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGSTGSFADLLRLVAAIDGID 232

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHP + +D +I+ + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II +
Sbjct: 233 RIRFTTSHPIEFTDDIIEVYRDTPELVSFLHLPVQSGSDRILNLMGRTHTALEYKAIIRK 292

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R+ RPDI ISSDFIVGFPGET +DF  TM L+  + +  ++SF +S R GTP ++M++ 
Sbjct: 293 LRAARPDIQISSDFIVGFPGETTEDFEKTMKLIADVNFDMSYSFIFSARPGTPAADMVDD 352

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVL 440
           V E  K +RL  LQ+++ +Q ++++   +G    +L+E   ++   +L GR+   + V  
Sbjct: 353 VPEEEKKQRLYILQERINQQAMAWSRRMLGTTQRILVEGTSRKSIMELSGRTENNRVVNF 412

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 IG  + V ITDV  ++L G++V
Sbjct: 413 EGTPDMIGKFVDVEITDVYPNSLRGKVV 440


>gi|317047312|ref|YP_004114960.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Pantoea sp. At-9b]
 gi|316948929|gb|ADU68404.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Pantoea sp. At-9b]
          Length = 474

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 198/447 (44%), Positives = 283/447 (63%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS +M D+  S  GY      ++AD+++LNTC IREKA EKV+  
Sbjct: 3   KKLHIKTWGCQMNEYDSSKMADLLNSTHGYTLTEEAEEADILLLNTCSIREKAQEKVFHQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK    +   DL++ V GCVA  EG+ I +R+P V++V GPQT +RLPE++   
Sbjct: 63  LGRWKKLK----ERNPDLIIGVGGCVASQEGDHIRQRAPCVDIVFGPQTLHRLPEMINTV 118

Query: 144 RFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           R     +VD  +   +KF+RL        R  G TAF++I EGC+K+CTFCVVPYTRG E
Sbjct: 119 RGSNSPIVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTFCVVPYTRGEE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR    ++ E  +L   GV E+ LLGQNVNA+RG   DG+ CTF++LL  ++ I G+ R
Sbjct: 174 VSRPSDDILLEIAQLAAQGVREVNLLGQNVNAYRGATFDGDFCTFAELLRLVAAIDGIDR 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP + +D +I  + D   L+ +LHLPVQSG+DRIL  M R HTA EY+ II ++
Sbjct: 234 IRFTTSHPIEFTDDIIDVYRDTPELVSFLHLPVQSGADRILTLMKRAHTALEYKAIIRKL 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R  RPDI ISSDFI+GFPGET  DF  TM L+  I +  +FSF YS R GTP +++ + V
Sbjct: 294 RVARPDIEISSDFIIGFPGETQQDFEQTMKLIGDINFDMSFSFIYSARPGTPAADLPDDV 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441
            E  K +RL  LQ ++ +Q +  +   +G +  +L+E   ++   +L GR+   + V   
Sbjct: 354 PEEEKKQRLYILQDRINQQAMGISRRMLGTVQRILVEGTSRKNVMELSGRTANNRVVNFE 413

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                IG  + V I DV  ++L G++V
Sbjct: 414 GNVSMIGKFVDVEIVDVYTNSLRGKVV 440


>gi|300692456|ref|YP_003753451.1| isopentenyl-adenosine A37 tRNA methylthiolase, Fe-S protein
           [Ralstonia solanacearum PSI07]
 gi|299079516|emb|CBJ52194.1| isopentenyl-adenosine A37 tRNA methylthiolase, Fe-S protein
           [Ralstonia solanacearum PSI07]
          Length = 450

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 204/456 (44%), Positives = 290/456 (63%), Gaps = 20/456 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ F+K++GCQMN YDS +M D+   ++G    ++ +DAD+I+ NTC +REKA EKV+S 
Sbjct: 2   KKVFIKTFGCQMNEYDSDKMADVLNAAEGLVPTDTPEDADVILFNTCSVREKAQEKVFSD 61

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE-R 142
           LGR++ LK        DL+V V GCVA  EG  I+ R+P V+VV GPQT +RLPEL++ R
Sbjct: 62  LGRVKALK----ARNPDLVVGVGGCVASQEGASIVARAPYVDVVFGPQTLHRLPELIDAR 117

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            R G+  VD  +   +KF+ L        R  G +AF++I EGC K+C++CVVPYTRG E
Sbjct: 118 RRTGRPQVDVSFPEIEKFDHLPPA-----RVEGPSAFVSIMEGCSKYCSYCVVPYTRGEE 172

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-GLDGEKCTFSDLLYSLSEIKGLV 261
           +SR    V+ E   L + GV E+TLLGQNVNA+ G+ G   E+  F+ LL  ++EI G+ 
Sbjct: 173 VSRPFEDVLAEVAGLAEQGVREVTLLGQNVNAYIGRMGDTSERADFALLLEYVAEIPGIE 232

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+RYTTSHP++ +  LI+A+     L+ +LHLPVQ GSDRIL +M R +T  EY+ II +
Sbjct: 233 RIRYTTSHPKEFTSRLIEAYATNRKLVDHLHLPVQHGSDRILMAMKRGYTVLEYKSIIRK 292

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R++RPDI+I++DFIVGFPGETD DF  TMDLV +IGY  +FSF YSPR GTP +N+ + 
Sbjct: 293 LRAIRPDISIATDFIVGFPGETDADFAKTMDLVHEIGYDNSFSFIYSPRPGTPAANLHDD 352

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSP------- 433
               VK ERL  LQ  +       ++  VG +  +L+E    K+  +L GR+        
Sbjct: 353 TPHAVKLERLKHLQATIDANMARISEGMVGSVQRILVEGPSRKDPSELHGRTENNRVVNF 412

Query: 434 WLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
            L  +    ++  +G ++ VRI      +L GE+ V
Sbjct: 413 ALPDLPQARRDQLVGQMLDVRIVHAFPHSLRGEVAV 448


>gi|294788156|ref|ZP_06753399.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Simonsiella muelleri ATCC
           29453]
 gi|294483587|gb|EFG31271.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Simonsiella muelleri ATCC
           29453]
          Length = 441

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 198/448 (44%), Positives = 287/448 (64%), Gaps = 13/448 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQ--GYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           ++ F++++GCQMN YDS +M  +   +    E++N  D AD+I+ NTC +REKA EKV+S
Sbjct: 2   KKVFIRTFGCQMNEYDSEKMLAVLAEEHGDIEQINEPDGADIILFNTCSVREKAQEKVFS 61

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL-LE 141
            LGR+++LK    KE  +L++ VAGCVA  EGE I+ R+P V+VV GPQT +RLP++ ++
Sbjct: 62  DLGRVKHLK----KENPNLIIGVAGCVASQEGEAIIERAPYVDVVFGPQTLHRLPKMIMD 117

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           +   G   VD  +   +KF+ L        R  G +AF++I EGC K+C+FCVVPYTRG 
Sbjct: 118 KETTGLSQVDISFPEIEKFDHLPPA-----RVEGGSAFISIMEGCSKYCSFCVVPYTRGE 172

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR L+ V+ E   L   GV EI LLGQNVNA+RG+  +GE C F+ LL  + EI G+ 
Sbjct: 173 EFSRPLNDVLTEIAHLAQQGVKEINLLGQNVNAYRGEMDNGEICDFATLLRIVHEIPGIE 232

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHPR+ SD +I+ + DL  L+ +LHLP+QSGSDR+L +M R +TA EY+ II +
Sbjct: 233 RMRFTTSHPREFSDAIIECYRDLPKLVSHLHLPIQSGSDRVLSAMKRGYTALEYKSIIRK 292

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R++RPD+ +SSDFIVGFPGET+ +F  T+ LV  I +  +F F YSPR GTP +N+ + 
Sbjct: 293 LRAIRPDLCLSSDFIVGFPGETEREFEQTLKLVKDIAFDLSFVFIYSPRPGTPAANLPDD 352

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSVVL 440
                K  RL  L + +  +    N A +G I   L+E    K+  +L  R+   + V  
Sbjct: 353 TPHEEKVRRLEALNEVIEAETARINQAMLGTIQRCLVEGVSKKDPDQLQARTANNRVVNF 412

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 I  ++++ IT+ +  +L GELV
Sbjct: 413 YGSADLINQMVELEITEARTFSLSGELV 440


>gi|117919457|ref|YP_868649.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Shewanella sp.
           ANA-3]
 gi|229890655|sp|A0KTX4|MIAB_SHESA RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|117611789|gb|ABK47243.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Shewanella sp. ANA-3]
          Length = 474

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 195/447 (43%), Positives = 287/447 (64%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS +M D+    QGY      ++AD+++LNTC IREKA EKV+  
Sbjct: 3   KKLHIKTWGCQMNEYDSSKMADLLGEYQGYTLTEEAEEADILLLNTCSIREKAQEKVFHQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK+    +  DL++ V GCVA  EG+ I  R+  V+++ GPQT +RLP+++++ 
Sbjct: 63  LGRWKTLKD----KNPDLIIGVGGCVASQEGKAIKDRAQCVDIIFGPQTLHRLPDMIDQV 118

Query: 144 RFG-KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           R G K V+D  +   +KF+RL        R  G TAF++I EGC K+C+FCVVPYTRG E
Sbjct: 119 RRGEKAVIDVSFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCSKYCSFCVVPYTRGEE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR    ++ E  +L + GV E+ LLGQNVNA+RG   DG  CTF++LL  ++ I G+ R
Sbjct: 174 VSRPSDDIILEIAQLAEQGVREVNLLGQNVNAYRGATHDGGICTFAELLRYVAAIDGIDR 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP + +  +I  + D   L+ +LHLPVQSGSDRIL +M R H A EY+ II R+
Sbjct: 234 IRFTTSHPIEFTQDIIDVYEDTPELVSFLHLPVQSGSDRILTAMKRGHMAIEYKSIIRRL 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R  RPDI ISSDFI+GFPGET +DF  TM L++ + +  +FSF YS R GTP +++ + V
Sbjct: 294 RKARPDIQISSDFIIGFPGETKEDFADTMKLIEDVAFDHSFSFIYSARPGTPAADLPDDV 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLN 441
           D   K +RL  LQ ++ +Q + ++   +G +  +L+E    K   +L GR+   + V   
Sbjct: 354 DMEEKKQRLAILQDRITQQAMRYSRHMMGTVQRILVEGPSVKNPMELRGRTENNRVVNFE 413

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
            +  +IG  + V I DV  ++L G+ +
Sbjct: 414 GQPKHIGSFVDVEIVDVYTNSLRGKFI 440


>gi|238790782|ref|ZP_04634541.1| hypothetical protein yfred0001_12920 [Yersinia frederiksenii ATCC
           33641]
 gi|238721140|gb|EEQ12821.1| hypothetical protein yfred0001_12920 [Yersinia frederiksenii ATCC
           33641]
          Length = 474

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 198/447 (44%), Positives = 286/447 (63%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS +M D+  S  GY+     ++ADL++LNTC IREKA EKV+S 
Sbjct: 3   KKLHIKTWGCQMNEYDSSKMADLLASTHGYQLTEIPEEADLLLLNTCSIREKAQEKVFSL 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LG  + LK    ++  +L++ V GCVA  EGE + +R+P V+V+ GPQT +RLPE++   
Sbjct: 63  LGHWKLLK----EKNPELIIGVGGCVASQEGEHLRQRAPCVDVIFGPQTLHRLPEMINHV 118

Query: 144 R-FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           +     +VD  +   +KF+RL        R  G TAF++I EGC+K+CTFCVVPYTRG E
Sbjct: 119 QGTHSPIVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTFCVVPYTRGEE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR    ++ E  +L   GV E+ LLGQNVNA+RG   DG+ C+F++LL  ++ I G+ R
Sbjct: 174 VSRPSDDILFEIAQLAAQGVREVNLLGQNVNAYRGATYDGDICSFAELLRLVAAIDGIDR 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP + +D +I  + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II ++
Sbjct: 234 VRFTTSHPIEFTDDIIDVYRDTPELVSFLHLPVQSGSDRILTMMKRAHTALEYKAIIRKL 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R  RPDI ISSDFI+GFPGET  DF  TM LV  + +  ++SF YS R GTP +++ + V
Sbjct: 294 RQARPDIQISSDFIIGFPGETQQDFEQTMKLVADVHFDTSYSFIYSSRPGTPAADLPDDV 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441
            E+ K +RL  LQ+++ +Q +  +   VG +  +L+E   ++   +L GR+   + V   
Sbjct: 354 SEDEKKQRLHILQQRITQQAMEISRRMVGTVQRILVEGTSRKNVMELAGRTENNRVVNFE 413

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                IG  + V I DV  S+L G L+
Sbjct: 414 GTPEMIGKFVDVEIVDVYASSLRGILL 440


>gi|303256206|ref|ZP_07342222.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Burkholderiales bacterium
           1_1_47]
 gi|302860935|gb|EFL84010.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Burkholderiales bacterium
           1_1_47]
          Length = 441

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 199/447 (44%), Positives = 290/447 (64%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDS-LRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ ++K++GCQMN YDS    +    + GYE  + +++ADL+V NTC IREKA EKV+S 
Sbjct: 4   KKIYLKTFGCQMNEYDSGKIADIAKAAAGYEVTDDINEADLVVFNTCSIREKAQEKVFSD 63

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR+R LK ++     +L + V GCVA  EG  I+RR+P V+VV GPQT +RLPELLE+ 
Sbjct: 64  LGRVRELKKTK----PNLKIAVGGCVASQEGGNIVRRAPYVDVVFGPQTLHRLPELLEKN 119

Query: 144 RFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
               R  VD  +   +KF+ L             TAF++I EGC K+C++CVVPYTRG E
Sbjct: 120 EKEHRPQVDISFPEIEKFDHLPTPHAD-----AATAFVSIMEGCSKYCSYCVVPYTRGEE 174

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR +  V+ E  +L   GV E+TLLGQNVNA+RG+G DGE   F+ LL  ++EI G+ R
Sbjct: 175 FSRPVEDVLVEIAQLAAQGVKEVTLLGQNVNAYRGEGPDGEIVDFALLLEYVAEIDGIER 234

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +RYTTSHP++ ++ LI+A+  + +L  ++HLPVQ+GSDR+L  M R +T  EY+ II ++
Sbjct: 235 IRYTTSHPKEFTNRLIEAYRKIPILANHVHLPVQAGSDRVLAGMKRGYTILEYKSIIRKL 294

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R++RPDI+I++DFIVGFP ET++DF  TM+L+ +I +  +FSF YS R GTP + + +  
Sbjct: 295 RAIRPDISIATDFIVGFPNETEEDFEKTMNLIKEIKFDASFSFVYSKRPGTPAAELPDDT 354

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRSPWLQSVVLN 441
            ++VK ERL  LQ    +     + + VG +   L+    K+ +GKL  R+   + V  N
Sbjct: 355 PQSVKLERLQRLQALNTQHAQEISQSMVGSVQRCLVVGEAKKGEGKLSARTDNNRIVTFN 414

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
              + IG ++ ++I +V   TL GELV
Sbjct: 415 GPENLIGQMVNLKINEVYPHTLGGELV 441


>gi|188591273|ref|YP_001795873.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Cupriavidus
           taiwanensis LMG 19424]
 gi|229890506|sp|B2AHA4|MIAB_CUPTR RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|170938167|emb|CAP63153.1| isopentenyl-adenosine A37 tRNA methylthiolase, Fe-S protein
           [Cupriavidus taiwanensis LMG 19424]
          Length = 450

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 204/456 (44%), Positives = 292/456 (64%), Gaps = 20/456 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ FVK+YGCQMN YDS +M D+   SQG E  ++++DAD+I+ NTC +REKA EKV+S 
Sbjct: 2   KKVFVKTYGCQMNEYDSDKMVDVLNASQGLEATDNVEDADVILFNTCSVREKAQEKVFSE 61

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-ER 142
           LGR++ LK  +     DL++ V GCVA  EG  I+ R+P V+VV GPQT +RLP+L+  R
Sbjct: 62  LGRMKALKAVK----PDLVIGVGGCVASQEGASIVSRAPYVDVVFGPQTLHRLPDLIARR 117

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            R G+  VD  +   +KF+ L        R  G +AF++I EGC K+C++CVVPYTRG E
Sbjct: 118 QRTGQSQVDISFPEIEKFDHLPPA-----RVEGPSAFVSIMEGCSKYCSYCVVPYTRGEE 172

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-GLDGEKCTFSDLLYSLSEIKGLV 261
           +SR    V+ E   L + GV E+TLLGQNVNA+RGK G   E   F+ L+  ++EI G+ 
Sbjct: 173 VSRPFEDVLAEVAGLAEQGVREVTLLGQNVNAYRGKMGDTSEIADFALLIEYVAEIPGIE 232

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+RYTTSHP++ +  L++ +G  D L+ +LHLPVQ  SDRIL +M R ++  EY+ II R
Sbjct: 233 RIRYTTSHPKEFTSRLVELYGRCDKLVNHLHLPVQHASDRILMAMKRGYSVLEYKSIIRR 292

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R++RPD+++SSDFIVGFPGETD DF   M ++++IGY  +FSF +SPR GTP +N+ + 
Sbjct: 293 LRALRPDMSMSSDFIVGFPGETDADFDKLMAMIEEIGYDTSFSFIFSPRPGTPAANLHDD 352

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSP------- 433
               VK +RL  LQ  + E     +   VG +  +L+E    K+  +L GR+        
Sbjct: 353 TPREVKLQRLQRLQATIEENVQRISQGMVGTVQRILVEGPARKDPTELHGRTENNRVVNF 412

Query: 434 WLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
            L  V    ++  +G ++ V IT     +L GE+VV
Sbjct: 413 ALPGVPQAGRDRLVGQLVDVSITQAFPHSLRGEIVV 448


>gi|74318724|ref|YP_316464.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Thiobacillus
           denitrificans ATCC 25259]
 gi|74058219|gb|AAZ98659.1| tRNA-i(6)A37 modification enzyme MiaB [Thiobacillus denitrificans
           ATCC 25259]
          Length = 461

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 201/453 (44%), Positives = 283/453 (62%), Gaps = 12/453 (2%)

Query: 20  QCIVPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAE 78
            C   ++ ++K++GCQMN YDS +M D+   ++G    ++ +DAD+I+ NTC +REKA E
Sbjct: 12  HCPGMKKIYIKTFGCQMNEYDSDKMADVLNAAEGLTPTSTPEDADVILFNTCSVREKAQE 71

Query: 79  KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPE 138
           KV+  LGR+R+LK +      +L++ V GCVA  EG  I+ R+P V+VV GPQT +RLPE
Sbjct: 72  KVFHDLGRVRHLKQA----NPNLIIGVGGCVASQEGAAIVARAPFVDVVFGPQTLHRLPE 127

Query: 139 LL-ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197
           L+ +R   G+  VD  +   +KF+ L        R  G  AF++I EGC K+CTFCVVPY
Sbjct: 128 LIAQRRETGRAQVDISFPEIEKFDHLPPA-----RVEGGAAFVSIMEGCSKYCTFCVVPY 182

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257
           TRG E+SR    V+ E   L   GV EITLLGQNVNA++G   +G    F+ LL  + EI
Sbjct: 183 TRGEEVSRPFDDVIAEVANLAARGVKEITLLGQNVNAYQGALDEGGTADFAFLLEMVHEI 242

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
            G+ R+RYTTSHPR+M+  LI+ +G L  L+ +LHLPVQSGSDRIL +M R HT  E++ 
Sbjct: 243 PGVERIRYTTSHPREMTQRLIECYGKLPKLVSHLHLPVQSGSDRILAAMKRGHTVLEFKS 302

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
           I+ ++R  R D+ +SSDFIVGFPGET  DF ATM LV+++ +  +FSF YS R GTP ++
Sbjct: 303 IVRKLREQRSDLCLSSDFIVGFPGETGADFEATMKLVEELNFDASFSFIYSKRPGTPAAD 362

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQ 436
             + V   +K +RL+ LQ ++  Q    N + VG +  VL+E    K   +L GR+   +
Sbjct: 363 YADDVSAELKTQRLMRLQARIEAQAQGVNRSMVGSVQRVLVEGQARKNANELAGRTGNNR 422

Query: 437 SVVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
            V     +  +G  + V IT     +L GE V 
Sbjct: 423 IVNFAGPSRLLGQFVDVTITQALPHSLRGEAVT 455


>gi|317404691|gb|EFV85083.1| hypothetical protein HMPREF0005_04066 [Achromobacter xylosoxidans
           C54]
          Length = 477

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 194/443 (43%), Positives = 293/443 (66%), Gaps = 13/443 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ +++++GCQMN YDS +M D+    QG E  ++ +DAD+I+ NTC +REKA EKV+S 
Sbjct: 29  RKLYIRTFGCQMNEYDSDKMADVLRGDQGLELTDNPEDADVILFNTCSVREKAQEKVFSD 88

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR+++LK    K   +L++ V GCVA  EGE I++R+P V+VV GPQT +RLP+L++R 
Sbjct: 89  LGRVQHLK----KTNPNLVIGVGGCVASQEGEAIVKRAPYVDVVFGPQTLHRLPDLIQRR 144

Query: 144 RF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           R  G+  VD  +   +KF+ +        R  G TAF++I EGC K+C+FCVVPYTRG E
Sbjct: 145 RAEGRSQVDISFPEIEKFDNMPP-----PRVEGATAFVSIMEGCSKYCSFCVVPYTRGEE 199

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLV 261
           +SR    V+ E   L D GV E+TLLGQNVNA+RG+  D GE   F+ LL  + EI G+ 
Sbjct: 200 VSRPFDDVLVEVADLADQGVKEVTLLGQNVNAYRGRMSDSGEIADFAMLLEYVHEIPGIE 259

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+RYTTSHP++M+  ++ A+  L  L+ +LHLPVQ+GSDR+L +M R +T  E++ ++ R
Sbjct: 260 RIRYTTSHPKEMTQRMVDAYARLPKLVSFLHLPVQAGSDRVLAAMKRGYTTLEFKSVVRR 319

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R+ RPD+ +SSDFIVGFPGET++DF  TM L++ +G+  +FSF YS R GTP +++ ++
Sbjct: 320 LRAARPDLTLSSDFIVGFPGETEEDFEKTMKLIEDVGFDTSFSFVYSRRPGTPAADLHDE 379

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVL 440
             ++VK  RL  LQ  + EQ  +     +G    +L+E    ++  +L+GR+   + V  
Sbjct: 380 TPQDVKLRRLQRLQALINEQAAAIARNMIGTRQRLLVEGPSRRDPNELMGRTENNRIVNF 439

Query: 441 NSKNHNIGDIIKVRITDVKISTL 463
            +    IG ++ V IT+   ++L
Sbjct: 440 AAPARLIGQMVDVIITEAHTNSL 462


>gi|290510411|ref|ZP_06549781.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Klebsiella sp. 1_1_55]
 gi|289777127|gb|EFD85125.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Klebsiella sp. 1_1_55]
          Length = 478

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 196/448 (43%), Positives = 291/448 (64%), Gaps = 14/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS +M D+   + GY+     ++AD+++LNTC IREKA EKV+  
Sbjct: 7   KKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTEVAEEADVLLLNTCSIREKAQEKVFHQ 66

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK    ++  DL++ V GCVA  EG+ I +R+  V+++ GPQT +RLPE++   
Sbjct: 67  LGRWKLLK----EKNPDLIIGVGGCVASQEGDHIRQRAHYVDIIFGPQTLHRLPEMINAV 122

Query: 144 RFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           R G R  VVD  +   +KF+RL        R  G TAF++I EGC+K+CT+CVVPYTRG 
Sbjct: 123 R-GNRSPVVDISFPEIEKFDRLP-----EPRADGPTAFVSIMEGCNKYCTYCVVPYTRGE 176

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E+SR    ++ E  +L   GV E+ LLGQNVNAWRG+  DG   +F+DLL  ++ I G+ 
Sbjct: 177 EVSRPCDDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTTGSFADLLRLVAAIDGID 236

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHP + +D +I+ + D   L+ +LHLPVQSGSDR+L  M R HTA EY+ II +
Sbjct: 237 RIRFTTSHPIEFTDDIIEVYRDTPELVSFLHLPVQSGSDRVLNLMGRTHTALEYKAIIRK 296

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R  RPDI ISSDFIVGFPGET DDF  TM L+  + +  ++SF +S R GTP ++M++ 
Sbjct: 297 LREARPDIQISSDFIVGFPGETTDDFEKTMKLIADVNFDMSYSFIFSARPGTPAADMVDD 356

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVL 440
           V E  K +RL  LQ+++ +Q ++++   +G +  +L+E   ++   +L GR+   + V  
Sbjct: 357 VPEEDKKQRLYILQERINQQAMAWSRRMLGTVQRILVEGTSRKSLMELSGRTENNRVVNF 416

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 +G  + V I DV  ++L G++V
Sbjct: 417 EGTPDMVGKFVDVEIVDVYTNSLRGKIV 444


>gi|90407491|ref|ZP_01215674.1| tRNA-i(6)A37 modification enzyme MiaB [Psychromonas sp. CNPT3]
 gi|90311412|gb|EAS39514.1| tRNA-i(6)A37 modification enzyme MiaB [Psychromonas sp. CNPT3]
          Length = 473

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 199/446 (44%), Positives = 294/446 (65%), Gaps = 12/446 (2%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +  VK++GCQMN YDS +M D+   S GY  V++ +DAD+I+LNTC IREKA EKV+  L
Sbjct: 4   KLHVKTWGCQMNEYDSSKMADLLNSSNGYISVDNAEDADVILLNTCSIREKAQEKVFHQL 63

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR + LK+   K+ G L++ V GCVA  EG+ I RR+P V++V GPQT +RLP++++  +
Sbjct: 64  GRWKKLKD---KKPG-LIIGVGGCVASQEGKAIRRRAPYVDIVFGPQTLHRLPKMIQDVK 119

Query: 145 FGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
                V+D  +   +KF+ L        R  G TAF+TI EGC K+CTFC+VPYTRG E+
Sbjct: 120 DNNHAVIDVSFPEIEKFDCLPDA-----RADGATAFVTIMEGCSKYCTFCIVPYTRGEEV 174

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR +  ++ E  +L + GV EI LLGQNVN++ G   DG+ C+F++LL +++ I G+ RL
Sbjct: 175 SRPVDDILLEVAQLAEQGVREINLLGQNVNSYIGATFDGKTCSFAELLRNVASIDGIDRL 234

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           RYTTS+P D  D +I  + D   L+ +LHLPVQ+GSDRIL +M R HTA +Y++ I  ++
Sbjct: 235 RYTTSNPIDFDDEIIDVYRDTPELVDFLHLPVQAGSDRILSAMKRGHTAAQYKEKIVALK 294

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
            VRP++ +SSDFIVGFP ETD+DF+ TMDL+++IG+  ++SF YS R GTP ++M + V 
Sbjct: 295 LVRPNLTLSSDFIVGFPNETDEDFQQTMDLIEEIGFDISYSFIYSQRPGTPAADMPDDVS 354

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNS 442
             VK ERL  LQ  + +Q +      VG +  +L+E   ++   +L GR+   + V    
Sbjct: 355 LQVKKERLARLQHAITQQALQIARRMVGSVQRILVEGPSRKNIMELCGRTENNRIVNFEG 414

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
            + +IG  + V IT+V  +++ G+ +
Sbjct: 415 DHRSIGSFVDVEITEVHSNSIRGKFI 440


>gi|206578177|ref|YP_002239691.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Klebsiella pneumoniae
           342]
 gi|288936533|ref|YP_003440592.1| RNA modification enzyme, MiaB family [Klebsiella variicola At-22]
 gi|229890612|sp|B5XZQ0|MIAB_KLEP3 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|206567235|gb|ACI09011.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Klebsiella pneumoniae
           342]
 gi|288891242|gb|ADC59560.1| RNA modification enzyme, MiaB family [Klebsiella variicola At-22]
          Length = 474

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 196/448 (43%), Positives = 291/448 (64%), Gaps = 14/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS +M D+   + GY+     ++AD+++LNTC IREKA EKV+  
Sbjct: 3   KKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTEVAEEADVLLLNTCSIREKAQEKVFHQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK    ++  DL++ V GCVA  EG+ I +R+  V+++ GPQT +RLPE++   
Sbjct: 63  LGRWKLLK----EKNPDLIIGVGGCVASQEGDHIRQRAHYVDIIFGPQTLHRLPEMINAV 118

Query: 144 RFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           R G R  VVD  +   +KF+RL        R  G TAF++I EGC+K+CT+CVVPYTRG 
Sbjct: 119 R-GNRSPVVDISFPEIEKFDRLP-----EPRADGPTAFVSIMEGCNKYCTYCVVPYTRGE 172

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E+SR    ++ E  +L   GV E+ LLGQNVNAWRG+  DG   +F+DLL  ++ I G+ 
Sbjct: 173 EVSRPCDDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTTGSFADLLRLVAAIDGID 232

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHP + +D +I+ + D   L+ +LHLPVQSGSDR+L  M R HTA EY+ II +
Sbjct: 233 RIRFTTSHPIEFTDDIIEVYRDTPELVSFLHLPVQSGSDRVLNLMGRTHTALEYKAIIRK 292

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R  RPDI ISSDFIVGFPGET DDF  TM L+  + +  ++SF +S R GTP ++M++ 
Sbjct: 293 LREARPDIQISSDFIVGFPGETTDDFEKTMKLIADVNFDMSYSFIFSARPGTPAADMVDD 352

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVL 440
           V E  K +RL  LQ+++ +Q ++++   +G +  +L+E   ++   +L GR+   + V  
Sbjct: 353 VPEEDKKQRLYILQERINQQAMAWSRRMLGTVQRILVEGTSRKSLMELSGRTENNRVVNF 412

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 +G  + V I DV  ++L G++V
Sbjct: 413 EGTPDMVGKFVDVEIVDVYTNSLRGKIV 440


>gi|261343533|ref|ZP_05971178.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Providencia rustigianii
           DSM 4541]
 gi|282568682|gb|EFB74217.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Providencia rustigianii
           DSM 4541]
          Length = 476

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 196/448 (43%), Positives = 293/448 (65%), Gaps = 14/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ ++K++GCQMN YDS +M  +  S  GY+  +  ++ADL++LNTC IREKA EKV+  
Sbjct: 5   KKLYMKTWGCQMNEYDSSKMVSLLESTHGYQLTDIAEEADLLLLNTCSIREKAQEKVFHQ 64

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR +  K+ +     D+++ V GCVA  EG+ I +R+P V++V GPQT +RLPE++ + 
Sbjct: 65  LGRWKFFKDKK----PDIIIGVGGCVASQEGDFIRQRAPCVDIVFGPQTLHRLPEMINQI 120

Query: 144 RFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           + G R  ++D  +   +KF+ L        R  G TAF++I EGC+K+CTFCVVPYTRG 
Sbjct: 121 Q-GNRSPIIDISFPEIEKFDNLP-----EPRAEGPTAFVSIMEGCNKYCTFCVVPYTRGE 174

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E+SR    ++ E  +L   GV E+ LLGQNVNA+RG   DGE C+F++LL  ++ I G+ 
Sbjct: 175 EVSRPCDDILFEIAQLAAQGVREVNLLGQNVNAYRGATFDGEICSFAELLRLVASIDGID 234

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHP + +D +I+ + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II +
Sbjct: 235 RVRFTTSHPIEFTDDIIEVYRDTPELVSFLHLPVQSGSDRILTMMKRAHTALEYKAIIRK 294

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R  RP I ISSDFIVGFPGET +DF  TM L+  + +  ++SF YS R GTP +++ + 
Sbjct: 295 LREARPGILISSDFIVGFPGETTEDFEKTMKLIADVNFDMSYSFVYSARPGTPAADLPDD 354

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVL 440
           V E+ K +RL  LQ+++ +Q +SF+ A +G +  +L+E   ++   +L GR+   + V  
Sbjct: 355 VTEDEKKQRLYLLQQRINQQAMSFSRAMLGTVQRILVEGTSRKNVMELSGRTENNRVVNF 414

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 IG  + V I DV  ++L G+++
Sbjct: 415 EGTPDMIGKFVDVEIVDVYTNSLRGKVI 442


>gi|241662041|ref|YP_002980401.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Ralstonia
           pickettii 12D]
 gi|240864068|gb|ACS61729.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Ralstonia pickettii 12D]
          Length = 456

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 204/455 (44%), Positives = 289/455 (63%), Gaps = 20/455 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ F+K+YGCQMN YDS +M D+   ++G    ++ +DAD+I+ NTC +REKA EKV+S 
Sbjct: 2   KKVFIKTYGCQMNEYDSDKMSDVLNAAEGLVPTDTPEDADVILFNTCSVREKAQEKVFSE 61

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE-R 142
           LGR++ LK  +     DL+V V GCVA  EG  I+ R+P V+VV GPQT +RLP+L+  R
Sbjct: 62  LGRVKALKALK----PDLVVGVGGCVASQEGASIVARAPYVDVVFGPQTLHRLPDLIAAR 117

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            R G+  VD  +   +KF+ L        R  G +AF++I EGC K+C++CVVPYTRG E
Sbjct: 118 RRTGRSQVDVSFPEIEKFDHLPPA-----RVDGASAFVSIMEGCSKYCSYCVVPYTRGEE 172

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-GLDGEKCTFSDLLYSLSEIKGLV 261
           +SR    V+ E   L + GV E+TLLGQNVNA+ GK G   E+  F+ LL  ++EI G+ 
Sbjct: 173 VSRPFDDVLAEVAGLAEQGVREVTLLGQNVNAYIGKMGDTSERADFALLLEYVAEIPGIE 232

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+RYTTSHP++ S  LI+A+     L+ +LHLPVQ GSDRIL +M R +T  EY+  I +
Sbjct: 233 RIRYTTSHPKEFSSRLIEAYATNPKLVDHLHLPVQHGSDRILMAMKRGYTVLEYKSSIRK 292

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R++RP+I+I++DFIVGFPGETD DF  TMDL+ +IGY  +FSF YSPR GTP +N+ + 
Sbjct: 293 LRAIRPNISIATDFIVGFPGETDADFAKTMDLIHEIGYDTSFSFIYSPRPGTPAANLPDD 352

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSP------- 433
             + VK ERL  LQ  + E     +   VG +  +L+E    K+  +L GR+        
Sbjct: 353 TPQAVKLERLKHLQATIEENVARISQGMVGSVQRILVEGPSRKDPTELHGRTENNRVVNF 412

Query: 434 WLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            L  +    ++  IG ++ VRI      +L GE+ 
Sbjct: 413 ALPDLPQARRDQLIGQMLDVRIVHAFPHSLRGEVA 447


>gi|229891229|sp|Q3SFF1|MIAB_THIDA RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
          Length = 446

 Score =  380 bits (976), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 200/448 (44%), Positives = 282/448 (62%), Gaps = 12/448 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ ++K++GCQMN YDS +M D+   ++G    ++ +DAD+I+ NTC +REKA EKV+  
Sbjct: 2   KKIYIKTFGCQMNEYDSDKMADVLNAAEGLTPTSTPEDADVILFNTCSVREKAQEKVFHD 61

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-ER 142
           LGR+R+LK +      +L++ V GCVA  EG  I+ R+P V+VV GPQT +RLPEL+ +R
Sbjct: 62  LGRVRHLKQA----NPNLIIGVGGCVASQEGAAIVARAPFVDVVFGPQTLHRLPELIAQR 117

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
              G+  VD  +   +KF+ L        R  G  AF++I EGC K+CTFCVVPYTRG E
Sbjct: 118 RETGRAQVDISFPEIEKFDHLPPA-----RVEGGAAFVSIMEGCSKYCTFCVVPYTRGEE 172

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR    V+ E   L   GV EITLLGQNVNA++G   +G    F+ LL  + EI G+ R
Sbjct: 173 VSRPFDDVIAEVANLAARGVKEITLLGQNVNAYQGALDEGGTADFAFLLEMVHEIPGVER 232

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +RYTTSHPR+M+  LI+ +G L  L+ +LHLPVQSGSDRIL +M R HT  E++ I+ ++
Sbjct: 233 IRYTTSHPREMTQRLIECYGKLPKLVSHLHLPVQSGSDRILAAMKRGHTVLEFKSIVRKL 292

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R  R D+ +SSDFIVGFPGET  DF ATM LV+++ +  +FSF YS R GTP ++  + V
Sbjct: 293 REQRSDLCLSSDFIVGFPGETGADFEATMKLVEELNFDASFSFIYSKRPGTPAADYADDV 352

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLN 441
              +K +RL+ LQ ++  Q    N + VG +  VL+E    K   +L GR+   + V   
Sbjct: 353 SAELKTQRLMRLQARIEAQAQGVNRSMVGSVQRVLVEGQARKNANELAGRTGNNRIVNFA 412

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELVV 469
             +  +G  + V IT     +L GE V 
Sbjct: 413 GPSRLLGQFVDVTITQALPHSLRGEAVT 440


>gi|329296076|ref|ZP_08253412.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Plautia stali symbiont]
          Length = 474

 Score =  380 bits (976), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 195/447 (43%), Positives = 287/447 (64%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS +M D+  S  GY      +DAD+++LNTC IREKA EKV+  
Sbjct: 3   KKLHIKTWGCQMNEYDSSKMADLLNSTHGYTLTEEAEDADVLLLNTCSIREKAQEKVFHL 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK     +  +L++ V GCVA  EG++I +R+  V++V GPQT +RLPE++ + 
Sbjct: 63  LGRWKKLK----AKNPELIIGVGGCVASQEGDKIRQRAQCVDIVFGPQTLHRLPEMINQV 118

Query: 144 RFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           R  K  +VD  +   +KF+RL        R  G TAF++I EGC+K+CTFCVVPYTRG E
Sbjct: 119 RGSKSTIVDVSFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTFCVVPYTRGEE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR    ++ E  +L   GV E+ LLGQNVNA+RG   D + CTF++LL  ++ I G+ R
Sbjct: 174 VSRPCDDILLEVAQLAAQGVREVNLLGQNVNAYRGATFDDQICTFAELLRLVAAIDGIDR 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP + +D +I  + D+  L+ +LHLPVQSG+DRIL  M R HTA EY+ II ++
Sbjct: 234 IRFTTSHPIEFTDDIIDVYRDMPELVSFLHLPVQSGADRILTLMKRAHTALEYKAIIRKL 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
            + RPDI ISSDFI+GFPGET  DF  TM L+ ++ +  +FSF YS R GTP +++ + V
Sbjct: 294 VAARPDIQISSDFIIGFPGETQQDFEQTMKLIGEVNFDTSFSFIYSARPGTPAADLPDDV 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441
            E  K +RL  LQ ++ +Q ++++   +G +  +L+E   ++   +L GR+   + V   
Sbjct: 354 PEEEKKQRLYILQDRINQQAMAWSRGMLGTVQRILVEGTSRKNVMELTGRTENNRVVNFE 413

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                IG  + V I DV  ++L G +V
Sbjct: 414 GDVRMIGKFVDVEIVDVYTNSLRGVVV 440


>gi|83648010|ref|YP_436445.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Hahella
           chejuensis KCTC 2396]
 gi|123531267|sp|Q2SBF4|MIAB_HAHCH RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|83636053|gb|ABC32020.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Hahella chejuensis KCTC
           2396]
          Length = 446

 Score =  380 bits (976), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 202/448 (45%), Positives = 285/448 (63%), Gaps = 13/448 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           Q+ F+K+YGCQMN YDS RM D+   S   E  ++ D+AD+++LNTC IREKA EKV+  
Sbjct: 3   QKLFIKTYGCQMNEYDSSRMADLLGESHSVELTDNPDEADILLLNTCSIREKAQEKVFHQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK    ++  +LL+ V GCVA  EG+ I  R+P V++V GPQT +RLPE++   
Sbjct: 63  LGRWKTLK----EKNPNLLIGVGGCVASQEGDAIRDRAPYVDMVFGPQTLHRLPEMVNSV 118

Query: 144 RFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
              K  +VD  +   +KF+RL +         G +AF++I EGC K+CTFCVVPYTRG E
Sbjct: 119 AHQKIPMVDVTFPEIEKFDRLPM-----PSSEGASAFVSIMEGCSKYCTFCVVPYTRGEE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR +  V+ E   L   GV E+ LLGQNVNA+RG   DG+    ++L+  ++ + G+ R
Sbjct: 174 VSRPVDDVIAEIAHLAGQGVREVNLLGQNVNAYRGLTHDGDYMDLAELITYVASVDGIDR 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +RYTTSHP + SD LI  +  +  L+ +LHLPVQSGSDRIL  M R HT  EY   + R+
Sbjct: 234 IRYTTSHPVEFSDSLIDVYASVPKLVSHLHLPVQSGSDRILNLMKRGHTVAEYTDKLRRL 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           + +RPDI++SSDFIVGFPGETD DF  TM+L+++IG+  +FSF YS R GTP +N+ + V
Sbjct: 294 QEIRPDISLSSDFIVGFPGETDADFEETMNLINEIGFDHSFSFVYSARPGTPAANLEDNV 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSVVLN 441
            E  K +RL  LQ+++ +     +   VG    +L+     K+ G+L GR+   + V   
Sbjct: 354 SEEAKKQRLAILQQRILQFAQDISRKMVGSTQRILVTGVSKKDPGELQGRTENNRVVNFR 413

Query: 442 SKNHN-IGDIIKVRITDVKISTLYGELV 468
           S +H+ IG  + V IT    ++L GE V
Sbjct: 414 SDSHDIIGRFVDVTITAALPNSLRGERV 441


>gi|113969348|ref|YP_733141.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Shewanella sp.
           MR-4]
 gi|123130674|sp|Q0HLI3|MIAB_SHESM RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|113884032|gb|ABI38084.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Shewanella sp. MR-4]
          Length = 474

 Score =  380 bits (976), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 196/447 (43%), Positives = 286/447 (63%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS +M D+    QGY      ++AD+++LNTC IREKA EKV+  
Sbjct: 3   KKLHIKTWGCQMNEYDSSKMADLLGEYQGYTLTEEAEEADILLLNTCSIREKAQEKVFHQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK+    +  DL++ V GCVA  EG+ I  R+  V+++ GPQT +RLP+++E+ 
Sbjct: 63  LGRWKTLKD----KNPDLIIGVGGCVASQEGKAIKDRAHCVDIIFGPQTLHRLPDMIEQV 118

Query: 144 RFG-KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           R G K V+D  +   +KF+RL        R  G TAF++I EGC K+C+FCVVPYTRG E
Sbjct: 119 RRGEKAVIDVSFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCSKYCSFCVVPYTRGEE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR    ++ E  +L + GV E+ LLGQNVNA+RG   DG  CTF++LL  ++ I G+ R
Sbjct: 174 VSRPSDDIILEIAQLAEQGVREVNLLGQNVNAYRGATHDGGICTFAELLRYVAAIDGIDR 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP + +  +I  + D   L+ +LHLPVQSGSDRIL +M R H A EY+ II R+
Sbjct: 234 IRFTTSHPIEFTQDIIDVYEDTPELVSFLHLPVQSGSDRILTAMKRGHMAIEYKSIIRRL 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R  RPDI ISSDFI+GFPGET +DF  TM L++ + +  +FSF YS R GTP +++ + V
Sbjct: 294 RKARPDIQISSDFIIGFPGETKEDFADTMKLIEDVAFDHSFSFIYSARPGTPAADLPDDV 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLN 441
           D   K +RL  LQ ++ +Q + ++   +G +  +L+E    K   +L GR+   + V   
Sbjct: 354 DMEEKKQRLAILQDRITQQAMRYSRHMMGTVQRILVEGPSVKNPMELRGRTENNRVVNFE 413

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
               +IG  + V I DV  ++L G+ +
Sbjct: 414 GLPKHIGSFVDVEIVDVYTNSLRGKFI 440


>gi|53804481|ref|YP_113916.1| tRNA-i(6)A37 modification enzyme MiaB [Methylococcus capsulatus
           str. Bath]
 gi|81682096|sp|Q608N1|MIAB_METCA RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|53758242|gb|AAU92533.1| tRNA-i(6)A37 modification enzyme MiaB [Methylococcus capsulatus
           str. Bath]
          Length = 458

 Score =  380 bits (976), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 198/449 (44%), Positives = 287/449 (63%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           +PQ+ +++++GCQMN YDS +M D+   S  +E   S ++AD+++LNTC IR+KA EKV+
Sbjct: 1   MPQKLYIETFGCQMNEYDSAKMRDLLEVSDSFELARSPEEADVLLLNTCSIRDKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S LGR R +K  R     ++++ V GCVA  EGE + +R+P V++V GPQT +RLP +LE
Sbjct: 61  SQLGRWRPIKLRR----PEVVIGVGGCVASQEGEALQKRAPYVDIVFGPQTLHRLPSMLE 116

Query: 142 RARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           + R  +R VVD  +   +KF+ L        R  G  AF+++ EGC K+CTFCVVPYTRG
Sbjct: 117 QVRCERRPVVDVSFPAIEKFDALP-----EPRADGPKAFVSVMEGCGKYCTFCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            EISR +  V+ E   L + GV E+ LLGQNVNA+RG   DG     + L++ ++ + G+
Sbjct: 172 EEISRPVDDVIAEIVALAEQGVREVNLLGQNVNAYRGVLADGGMADLALLMHYVAAVDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+TTSHP + SD LI+A  D+  L+ +LHLPVQSGSDRIL+ M R HT  EY   + 
Sbjct: 232 DRIRFTTSHPVEFSDALIEAFRDIPQLVSHLHLPVQSGSDRILRLMKRGHTRAEYMAKVA 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R +RPD+++SSDFIVGFPGETD+DF  TM L++++G+ Q+FSF +S R GTP + M +
Sbjct: 292 KLREIRPDLSLSSDFIVGFPGETDEDFEDTMALIEQLGFDQSFSFIFSARPGTPAAAMAD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439
            V    K  RL  LQ K+ +       + VG I  VL+E   ++   +L GR+   + V 
Sbjct: 352 DVPPETKRARLARLQAKIADNAAKIGASMVGSIQSVLVEGTSRKNFNELSGRTENNRVVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG  + V IT+   ++L G L+
Sbjct: 412 FAGHPRLIGQFVDVVITESLPNSLRGRLI 440


>gi|311280443|ref|YP_003942674.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Enterobacter cloacae
           SCF1]
 gi|308749638|gb|ADO49390.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Enterobacter cloacae
           SCF1]
          Length = 474

 Score =  380 bits (976), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 198/448 (44%), Positives = 290/448 (64%), Gaps = 14/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS +M D+   + GY+     ++AD+++LNTC IREKA EKV+  
Sbjct: 3   KKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTEVAEEADVLLLNTCSIREKAQEKVFHQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK    ++  DL++ V GCVA  EG+ I +R+  V+++ GPQT +RLPE++   
Sbjct: 63  LGRWKLLK----EKNPDLIIGVGGCVASQEGDHIRQRAHYVDIIFGPQTLHRLPEMINSV 118

Query: 144 RFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           R G R  VVD  +   +KF+RL        R  G TAF++I EGC+K+CT+CVVPYTRG 
Sbjct: 119 R-GNRSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTYCVVPYTRGE 172

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E+SR    ++ E  +L   GV E+ LLGQNVNAWRG+  DG   +F+DLL  ++ I G+ 
Sbjct: 173 EVSRPSDDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTTGSFADLLRLVAAIDGID 232

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHP + +D +I+ + D   L+ +LHLPVQSGSDR+L  M R HTA EY+ II +
Sbjct: 233 RVRFTTSHPIEFTDDIIEVYRDTPELVSFLHLPVQSGSDRVLNLMGRTHTALEYKAIIRK 292

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R  RPDI ISSDFIVGFPGET DDF  TM L+  + +  ++SF +S R GTP ++M++ 
Sbjct: 293 LREARPDIQISSDFIVGFPGETTDDFERTMKLIADVNFDMSYSFIFSARPGTPAADMVDD 352

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVL 440
           V E  K +RL  LQ+++ +Q ++++   +G    +L+E   ++   +L GR+   + V  
Sbjct: 353 VAEEEKKQRLYILQERINQQAMAWSRRMLGTTQRILVEGTSRKSIMELSGRTENNRVVNF 412

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 IG  + V I DV  ++L G+LV
Sbjct: 413 EGTPDMIGKFVDVEIVDVYPNSLRGKLV 440


>gi|251790528|ref|YP_003005249.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Dickeya zeae Ech1591]
 gi|247539149|gb|ACT07770.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Dickeya zeae Ech1591]
          Length = 476

 Score =  380 bits (975), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 199/449 (44%), Positives = 289/449 (64%), Gaps = 14/449 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS ++ D+  S  GY+  +  ++ADL++LNTC IREKA EKV+  
Sbjct: 5   KKLHIKTWGCQMNEYDSSKIADLLESTHGYQLTDVAEEADLLLLNTCSIREKAQEKVFHQ 64

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK+       +L++ V GCVA  EGE I  R+  V+V+ GPQT +RLPE++   
Sbjct: 65  LGRWKTLKDV----NPNLIIGVGGCVASQEGEHIRDRAHYVDVIFGPQTLHRLPEMINHV 120

Query: 144 RFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           + G R  +VD  +   +KF+RL        R  G TAF++I EGC+K+CTFCVVPYTRG 
Sbjct: 121 Q-GTRSPIVDISFPEVEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTFCVVPYTRGE 174

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E+SR    V+ E  +L   GV E+ LLGQNVNA+RG   DG+ C+F++LL  ++ I G+ 
Sbjct: 175 EVSRPADDVLFEIAQLAAQGVREVNLLGQNVNAYRGATHDGDICSFAELLRLVAAIDGID 234

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+ TSHP + +D +I  + D   L+ +LHLPVQSGSDRIL  M RRHTA EY+ II +
Sbjct: 235 RIRFITSHPIEFTDDIISVYEDTPELVSFLHLPVQSGSDRILTMMKRRHTALEYKAIIRK 294

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R  RP I ISSDFI+GFPGET +DF  TM L+  + +  +FSF YSPR GTP ++M++ 
Sbjct: 295 LRKARPSIQISSDFIIGFPGETQEDFEQTMQLIADVDFDISFSFIYSPRPGTPAADMVDD 354

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVL 440
           V E  K +RL  LQ+++ +Q + ++   +G +  +L+E   ++   +L GR+   + V  
Sbjct: 355 VTEEEKKQRLYILQERINQQAMQYSRRMMGTVQRILVEGTSRKNVMELSGRTENNRVVNF 414

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELVV 469
                 IG  + V I DV  ++L G +V+
Sbjct: 415 EGTPDMIGKFVDVEIVDVYPNSLRGVVVL 443


>gi|257482205|ref|ZP_05636246.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 442

 Score =  380 bits (975), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 199/448 (44%), Positives = 283/448 (63%), Gaps = 13/448 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ +++++GCQMN YDS RM D+    Q  E     +DAD+I+LNTC IRE+A ++VYS 
Sbjct: 3   KKLYIETHGCQMNEYDSSRMVDLLGEHQALEVTARAEDADVILLNTCSIRERAQDRVYSQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR R LK +      ++++ V GCVA  EG  I  R+P V+VV GPQT +RLPE+++ A
Sbjct: 63  LGRWRELKLA----NPEMVIAVGGCVASQEGAAIRDRAPYVDVVFGPQTLHRLPEMIDAA 118

Query: 144 RFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           R  +   VD  +   +KF+ L        R  G +A++++ EGC K+CTFCVVPYTRG E
Sbjct: 119 RITRLPQVDVSFPEIEKFDHLP-----EPRVDGPSAYVSVMEGCSKYCTFCVVPYTRGEE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR    V+ E   L +NGV E+TLLGQNVN +RG   DG     +DL+  ++ + G+ R
Sbjct: 174 VSRPFDDVLSEVIHLAENGVREVTLLGQNVNGYRGTTHDGRVADLADLIRVVAAVDGIDR 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +RYTTSHP + SD LI+AH ++  L+ +LHLPVQSGSDRIL +M R HT  EY+  + ++
Sbjct: 234 IRYTTSHPLEFSDSLIQAHAEVPELVKHLHLPVQSGSDRILAAMKRNHTTLEYKSRLRKL 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+  P I+ISSDFIVGFPGET+ DF  TM L++ +G+  +FSF YSPR GTP +++ +  
Sbjct: 294 RAAVPGISISSDFIVGFPGETEKDFDNTMKLIEDVGFDFSFSFVYSPRPGTPAADLKDDT 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLN 441
            E +K ERL  LQ +L +Q    +   VG I  +L+  +  K+ G+L GR+   + V   
Sbjct: 354 PEALKKERLAALQHRLNQQGFEISRQMVGSIQRILVTDYSKKDPGELQGRTENNRIVNFR 413

Query: 442 SKNHN-IGDIIKVRITDVKISTLYGELV 468
             N   IG    V I D +  +L G L+
Sbjct: 414 CNNPKLIGQFANVHIDDAQPHSLRGSLL 441


>gi|59711366|ref|YP_204142.1| isopentenyl-adenosine A37 tRNA methylthiolase [Vibrio fischeri
           ES114]
 gi|197335117|ref|YP_002155521.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Vibrio fischeri MJ11]
 gi|75354378|sp|Q5E6U2|MIAB_VIBF1 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|229891024|sp|B5FBL3|MIAB_VIBFM RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|59479467|gb|AAW85254.1| isopentenyl-adenosine A37 tRNA methylthiolase [Vibrio fischeri
           ES114]
 gi|197316607|gb|ACH66054.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Vibrio fischeri MJ11]
          Length = 474

 Score =  380 bits (975), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 201/447 (44%), Positives = 286/447 (63%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS +M D+   + GYE      +AD+++LNTC IREKA EKV+  
Sbjct: 3   KKLLIKTWGCQMNEYDSSKMADLLGAANGYELTEEPTEADVLLLNTCSIREKAQEKVFHQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR +NLK+ +     DL++ V GCVA  EG+ I +R+P V+V+ GPQT +RLPE++ ++
Sbjct: 63  LGRWKNLKDKK----PDLVIGVGGCVATQEGDHIRQRAPYVDVIFGPQTLHRLPEMIRQS 118

Query: 144 RFG-KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           +   K V+D  +   +KF+ L        +  G TAF++I EGC K+CT+CVVPYTRG E
Sbjct: 119 QSNEKPVMDISFPEIEKFDNLP-----EPKAEGATAFVSIMEGCSKYCTYCVVPYTRGEE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR L  V+ E  +L + GV E+ LLGQNVNA+RG   DG+ CTF++LL  ++ I G+ R
Sbjct: 174 VSRPLDDVLFEIAQLAEQGVREVNLLGQNVNAYRGPMHDGDICTFAELLRMVASIDGIDR 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LR+TTSHP +  D +I  + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II ++
Sbjct: 234 LRFTTSHPLEFGDDIIAVYEDTPELVSFLHLPVQSGSDRILTMMKRPHTAIEYKSIIRKL 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R  RPDI ISSDFIVGFPGET  DF+ TM L+  + +  +FSF +S R GTP ++    +
Sbjct: 294 RKARPDIQISSDFIVGFPGETAKDFQDTMKLIKDVDFDMSFSFIFSARPGTPAADYPCDI 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441
            E  K +RL  LQ+++  Q + ++   +     VL+E   K+   +L  R+   + V   
Sbjct: 354 PEQEKKDRLAELQQQVNSQAMRYSRLMLDTEQRVLVEGPSKKNLMELRARTENNRVVNFE 413

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                IG  + V+ITDV  ++L GELV
Sbjct: 414 GSADLIGQFVDVKITDVFANSLRGELV 440


>gi|330960147|gb|EGH60407.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Pseudomonas
           syringae pv. maculicola str. ES4326]
          Length = 442

 Score =  380 bits (975), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 199/448 (44%), Positives = 283/448 (63%), Gaps = 13/448 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ +++++GCQMN YDS RM D+    Q  E     +DAD+I+LNTC IRE+A ++VYS 
Sbjct: 3   KKLYIETHGCQMNEYDSSRMVDLLGEHQALEVTARAEDADVILLNTCSIRERAQDRVYSQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR R LK +      ++++ V GCVA  EG  I  R+P V+VV GPQT +RLPE+++ A
Sbjct: 63  LGRWRELKLA----NPEMVIAVGGCVASQEGAAIRDRAPYVDVVFGPQTLHRLPEMIDAA 118

Query: 144 RFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           R  +   VD  +   +KF+ L        R  G +A++++ EGC K+CTFCVVPYTRG E
Sbjct: 119 RITRLPQVDVSFPEIEKFDHLP-----EPRVDGPSAYVSVMEGCSKYCTFCVVPYTRGEE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR    V+ E   L +NGV E+TLLGQNVN +RG   DG     +DL+  ++ + G+ R
Sbjct: 174 VSRPFDDVLSEVIHLAENGVREVTLLGQNVNGYRGTTHDGRVADLADLIRVVAAVDGIDR 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +RYTTSHP + SD LI+AH ++  L+ +LHLPVQSGSDRIL +M R HT  EY+  + ++
Sbjct: 234 IRYTTSHPLEFSDSLIQAHAEVPELVKHLHLPVQSGSDRILAAMKRNHTTLEYKSRLRKL 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+  P I+ISSDFIVGFPGET+ DF  TM L++ +G+  +FSF YSPR GTP +++ +  
Sbjct: 294 RAAVPGISISSDFIVGFPGETEKDFDNTMKLIEDVGFDFSFSFIYSPRPGTPAADLQDDT 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLN 441
            E +K ERL  LQ +L +Q    +   VG I  +L+  +  K+ G+L GR+   + V   
Sbjct: 354 PEALKKERLAALQHRLNQQGFEISRQMVGSIQRILVTDYSKKDPGELQGRTENNRIVNFR 413

Query: 442 SKNHN-IGDIIKVRITDVKISTLYGELV 468
             N   IG    V I D +  +L G L+
Sbjct: 414 CNNPKLIGQFADVHIDDAQPHSLRGSLL 441


>gi|256821541|ref|YP_003145504.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Kangiella koreensis DSM
           16069]
 gi|256795080|gb|ACV25736.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Kangiella koreensis DSM
           16069]
          Length = 446

 Score =  380 bits (975), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 201/448 (44%), Positives = 294/448 (65%), Gaps = 12/448 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ F+K++GCQMN YDS RM D+   + G E   S ++AD+++LNTC IREKA EKV+S 
Sbjct: 3   KKLFIKTWGCQMNEYDSSRMSDLLNKTHGLEAAASAEEADVVLLNTCSIREKAQEKVFSQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LG+ +NLK    +   DL++ V GCVA  EGE I +R+P V+V+ GPQT +RLPE++ +A
Sbjct: 63  LGQWKNLK----QNNPDLIIGVGGCVASQEGEAIRQRAPYVDVIFGPQTLHRLPEMIMQA 118

Query: 144 RFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
              K+ VVD  +   +KF+RL        R  G TAF+++ EGC K+C+FCVVPYTRG E
Sbjct: 119 SGQKKAVVDVSFPEIEKFDRLP-----EPRAEGPTAFVSVMEGCSKYCSFCVVPYTRGEE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR    V+ E  +L + GV EI LLGQNVNA+RG   +G+    ++L+  ++ I G+ R
Sbjct: 174 VSRPFDDVLAECAQLAEQGVREINLLGQNVNAYRGITHEGDTADLAELITYVAAIDGIDR 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +RYTTSHP + S+ LI+ + ++  L+ +LHLPVQSGSDR+L  M R HT  EY+  I ++
Sbjct: 234 IRYTTSHPVEFSERLIQVYAEVPELVSHLHLPVQSGSDRVLAMMKRGHTVLEYKSKIRKL 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R +RPDI++SSDFI+GFPGE+D DF  TM+L+  IGY  +FSF YS R GTP +++++  
Sbjct: 294 RQIRPDISMSSDFIIGFPGESDQDFEDTMNLIGDIGYDHSFSFIYSARPGTPAADIVDDT 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSPWLQSVVLN 441
             +VK +RL  LQ+++ +Q  S +   +G   +VL+E    K+  +L GR+   + V   
Sbjct: 354 PMDVKKQRLSILQQRINQQAFSISRNMIGTKQKVLVEGPSKKDPMELRGRTENNRIVNFV 413

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELVV 469
             +  IG   +V ITD   ++L G+ V 
Sbjct: 414 GPHSLIGKFAEVTITDAFPNSLRGDFVT 441


>gi|259909112|ref|YP_002649468.1| Putative tRNA-thiotransferase [Erwinia pyrifoliae Ep1/96]
 gi|224964734|emb|CAX56251.1| Putative tRNA-thiotransferase [Erwinia pyrifoliae Ep1/96]
          Length = 480

 Score =  380 bits (975), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 197/447 (44%), Positives = 286/447 (63%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS +M D+  S  GY      +DAD+++LNTC IREKA EKV+  
Sbjct: 9   KKLHIKTWGCQMNEYDSSKMADLLNSTHGYTLTEQAEDADVLLLNTCSIREKAQEKVFGL 68

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK +      D+++ V GCVA  EG +I +R+  V++V GPQT +RLPE++   
Sbjct: 69  LGRWKKLKEA----NPDVIIGVGGCVASQEGAQIRQRASCVDIVFGPQTLHRLPEMINSV 124

Query: 144 RFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           R  K  VVD  +   +KF+R+        R  G TAF++I EGC+K+CTFCVVPYTRG E
Sbjct: 125 RGTKSPVVDVSFPEIEKFDRMP-----EPRANGPTAFVSIMEGCNKYCTFCVVPYTRGEE 179

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR    V+ E  +L   GV E+ LLGQNVNA+RG   DG  C+F++LL  ++ I G+ R
Sbjct: 180 VSRPADDVLFEVAQLAAQGVREVNLLGQNVNAYRGATYDGGICSFAELLRLVATIDGIDR 239

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP + +D +I+ + D   L+ +LHLPVQSG+DRIL  M R HTA EY+ II ++
Sbjct: 240 IRFTTSHPIEFTDDIIEVYRDTPELVSFLHLPVQSGADRILTLMKRAHTALEYKAIIRKL 299

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
            + RPDI ISSDFI+GFPGE   DF  TM LV +I +  ++SF YS R GTP +++ + V
Sbjct: 300 LAARPDIQISSDFIIGFPGENQADFEQTMKLVGEINFDTSYSFIYSARPGTPAADLPDDV 359

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441
            E  K +RL  LQ ++ +Q ++++   +G +  +L+E   ++   +L GR+   + V   
Sbjct: 360 SEEEKKQRLYILQDRISQQAMAWSRRKLGTVQRILVEGTSRKSVMELAGRTECNRVVNFE 419

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
               +IG  + V ITDV  ++L G L+
Sbjct: 420 GAPEHIGKFVDVEITDVYANSLRGVLL 446


>gi|121608687|ref|YP_996494.1| (dimethylallyl)adenosine tRNA methylthiotransferase
           [Verminephrobacter eiseniae EF01-2]
 gi|229891021|sp|A1WIL9|MIAB_VEREI RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|121553327|gb|ABM57476.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Verminephrobacter
           eiseniae EF01-2]
          Length = 450

 Score =  380 bits (975), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 196/446 (43%), Positives = 289/446 (64%), Gaps = 15/446 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ F+K++GCQMN YDS +M D+  + QGYE   ++++ADLI+ NTC +REKA EKV+S 
Sbjct: 3   KKVFIKTFGCQMNEYDSDKMADVLHAAQGYEPTQNVEEADLILFNTCSVREKAQEKVFSD 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE-R 142
           LGR+++LK   ++ G      V GCVA  EG EI+RR+P V+VV GPQT +RLPELL+ R
Sbjct: 63  LGRVKHLKARGVRIG------VGGCVASQEGAEIIRRAPYVDVVFGPQTLHRLPELLQQR 116

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            R  +  +D  +   +KF+ L          +G +AF++I EGC K+C++CVVPYTRG E
Sbjct: 117 ERLDQPQIDISFPEIEKFDHLPAAS-----VQGASAFVSIMEGCSKYCSYCVVPYTRGEE 171

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-GLDGEKCTFSDLLYSLSEIKGLV 261
           +SR L  V+ E   L D GV E+TLLGQNVNA+RG+ G   ++   + LL  ++ I G+ 
Sbjct: 172 VSRPLDDVLVEVAGLADQGVKEVTLLGQNVNAYRGRMGSTAQRADLALLLDYVAGIPGVE 231

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+RYTTSHP + +  LI+A+  L  L  +LHLPVQ GSDRIL +M R +TA EY+  + +
Sbjct: 232 RIRYTTSHPNEFTPRLIEAYARLPKLANHLHLPVQHGSDRILMAMKRGYTAMEYKSTVRK 291

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R++RPD+A+SSDFIVGFPGET DDF   M L+ ++ +  +FSF +SPR GTP + + + 
Sbjct: 292 LRAIRPDLALSSDFIVGFPGETQDDFDKLMRLIAEVHFDNSFSFVFSPRPGTPAAGLPDD 351

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVL 440
               VK  RL  LQ  +     S + + VG +  +L+E    ++  +L+GR+   + V  
Sbjct: 352 TPHEVKLRRLQQLQGVIDTHIRSISASRVGTVQRILVEGASRRDAAELMGRTECNRVVNF 411

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGE 466
               H +G ++++ IT+ +  TL G+
Sbjct: 412 AGPPHLVGQMVELTITEARAYTLRGQ 437


>gi|71735074|ref|YP_276503.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Pseudomonas
           syringae pv. phaseolicola 1448A]
 gi|289625797|ref|ZP_06458751.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Pseudomonas
           syringae pv. aesculi str. NCPPB3681]
 gi|289648418|ref|ZP_06479761.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Pseudomonas
           syringae pv. aesculi str. 2250]
 gi|123635051|sp|Q48DN8|MIAB_PSE14 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|71555627|gb|AAZ34838.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|330867193|gb|EGH01902.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Pseudomonas
           syringae pv. aesculi str. 0893_23]
 gi|330871081|gb|EGH05790.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Pseudomonas
           syringae pv. aesculi str. 0893_23]
 gi|330987620|gb|EGH85723.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Pseudomonas
           syringae pv. lachrymans str. M301315]
          Length = 442

 Score =  379 bits (974), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 199/448 (44%), Positives = 283/448 (63%), Gaps = 13/448 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ +++++GCQMN YDS RM D+    Q  E     +DAD+I+LNTC IRE+A ++VYS 
Sbjct: 3   KKLYIETHGCQMNEYDSSRMVDLLGEHQALEVTARAEDADVILLNTCSIRERAQDRVYSQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR R LK +      ++++ V GCVA  EG  I  R+P V+VV GPQT +RLPE+++ A
Sbjct: 63  LGRWRELKLA----NPEMVIAVGGCVASQEGAAIRDRAPYVDVVFGPQTLHRLPEMIDAA 118

Query: 144 RFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           R  +   VD  +   +KF+ L        R  G +A++++ EGC K+CTFCVVPYTRG E
Sbjct: 119 RITRLPQVDVSFPEIEKFDHLP-----EPRVDGPSAYVSVMEGCSKYCTFCVVPYTRGEE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR    V+ E   L +NGV E+TLLGQNVN +RG   DG     +DL+  ++ + G+ R
Sbjct: 174 VSRPFDDVLSEVIHLAENGVREVTLLGQNVNGYRGTTHDGRVADLADLIRVVAAVDGIDR 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +RYTTSHP + SD LI+AH ++  L+ +LHLPVQSGSDRIL +M R HT  EY+  + ++
Sbjct: 234 IRYTTSHPLEFSDSLIQAHAEVPELVKHLHLPVQSGSDRILAAMKRNHTTLEYKSRLRKL 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+  P I+ISSDFIVGFPGET+ DF  TM L++ +G+  +FSF YSPR GTP +++ +  
Sbjct: 294 RAAVPGISISSDFIVGFPGETEKDFDNTMKLIEDVGFDFSFSFVYSPRPGTPAADLKDDT 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLN 441
            E +K ERL  LQ +L +Q    +   VG I  +L+  +  K+ G+L GR+   + V   
Sbjct: 354 PEALKKERLAALQHRLNQQGFEISRQMVGSIQRILVTDYSKKDPGELQGRTENNRIVNFR 413

Query: 442 SKNHN-IGDIIKVRITDVKISTLYGELV 468
             N   IG    V I D +  +L G L+
Sbjct: 414 CNNPKLIGQFADVHIDDAQPHSLRGSLL 441


>gi|301631123|ref|XP_002944656.1| PREDICTED: (Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB-like, partial [Xenopus (Silurana) tropicalis]
          Length = 437

 Score =  379 bits (974), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 203/446 (45%), Positives = 285/446 (63%), Gaps = 18/446 (4%)

Query: 30  KSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           K++GCQMN YDS +M  +   +QG E  +  + ADLI+ NTC +REKA EKV+S LGRI+
Sbjct: 1   KTFGCQMNEYDSDKMVAVLGAAQGDEPTDDPEAADLILFNTCSVREKAQEKVFSDLGRIK 60

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE-RARFGK 147
           +LK   +      L+ V GCVA  EG EI++R+P V+VV GPQT +RLPELL  RA   K
Sbjct: 61  HLKEKGV------LIGVGGCVASQEGAEIIQRAPFVDVVFGPQTLHRLPELLNARAAKAK 114

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
             VD  +   +KF+ L        R  G +AF++I EGC K+C++CVVPYTRG E+SR  
Sbjct: 115 PQVDISFPEIEKFDHLPPA-----RVEGASAFVSIMEGCSKYCSYCVVPYTRGEEVSRPF 169

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGK----GLDGEKCTFSDLLYSLSEIKGLVRL 263
             V+ E   L D GV E+TLLGQNVNA+RG       +GEK  F+ LL  ++EI G+ R+
Sbjct: 170 EDVLVEVAGLADQGVKEVTLLGQNVNAYRGAMGNTAENGEKADFALLLEYVAEIPGIERI 229

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           RYTTSHP + +  LI+A+  +  L+ +LHLPVQ GSDRIL +M R ++A EY+  + ++R
Sbjct: 230 RYTTSHPNEFTPRLIEAYAKIPKLVSHLHLPVQHGSDRILMAMKRGYSAMEYKSTVRKLR 289

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           ++RPD+A+SSDFIVGFPGET++DF+  M L+  + +  +FSF +SPR GTP +N+ +   
Sbjct: 290 AIRPDMAMSSDFIVGFPGETEEDFQKMMKLIHDVRFDNSFSFIFSPRPGTPAANLPDDTP 349

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRSPWLQSVVLNS 442
            +VK  RL  LQ  + +     +   VG +  +L+E H K   G+L+GR+   + V    
Sbjct: 350 HDVKLRRLQELQAVINQHIKDISLERVGTVQRLLVEGHSKRGNGELMGRTECHRVVNFPG 409

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
               IG II V+IT+    TL GE++
Sbjct: 410 HTRLIGQIIDVKITEAMTYTLRGEVL 435


>gi|298489005|ref|ZP_07007028.1| tRNA-i(6)A37 methylthiotransferase [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298156503|gb|EFH97600.1| tRNA-i(6)A37 methylthiotransferase [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 442

 Score =  379 bits (974), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 199/448 (44%), Positives = 283/448 (63%), Gaps = 13/448 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ +++++GCQMN YDS RM D+    Q  E     +DAD+I+LNTC IRE+A ++VYS 
Sbjct: 3   KKLYIETHGCQMNEYDSSRMVDLLGEHQALEVTARAEDADVILLNTCSIRERAQDRVYSQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR R LK +      ++++ V GCVA  EG  I  R+P V+VV GPQT +RLPE+++ A
Sbjct: 63  LGRWRELKLA----NPEMVIAVGGCVASQEGAAIRDRAPYVDVVFGPQTLHRLPEMIDAA 118

Query: 144 RFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           R  +   VD  +   +KF+ L        R  G +A++++ EGC K+CTFCVVPYTRG E
Sbjct: 119 RITRLPQVDVSFPEIEKFDHLP-----EPRVDGPSAYVSVMEGCSKYCTFCVVPYTRGEE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR    V+ E   L +NGV E+TLLGQNVN +RG   DG     +DL+  ++ + G+ R
Sbjct: 174 VSRPFDDVLSEVIHLAENGVREVTLLGQNVNGYRGTTHDGRVADLADLIRVVAAVDGIDR 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +RYTTSHP + SD LI+AH ++  L+ +LHLPVQSGSDRIL +M R HT  EY+  + ++
Sbjct: 234 IRYTTSHPLEFSDSLIQAHAEVPELVKHLHLPVQSGSDRILAAMKRNHTTLEYKSRLRKL 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+  P I+ISSDFIVGFPGET+ DF  TM L++ +G+  +FSF YSPR GTP +++ +  
Sbjct: 294 RAAVPGISISSDFIVGFPGETEKDFDNTMKLIEDVGFDFSFSFVYSPRPGTPAADLKDDT 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLN 441
            E +K ERL  LQ +L +Q    +   VG I  +L+  +  K+ G+L GR+   + V   
Sbjct: 354 PEALKKERLAALQHRLNQQGFEISRQMVGSIQRILVTDYSKKDPGELQGRTENNRIVNFR 413

Query: 442 SKNHN-IGDIIKVRITDVKISTLYGELV 468
             N   IG    V I D +  +L G L+
Sbjct: 414 CNNPKLIGQFADVHIDDAQPHSLRGSLL 441


>gi|89092053|ref|ZP_01165008.1| hypothetical protein MED92_07796 [Oceanospirillum sp. MED92]
 gi|89083788|gb|EAR63005.1| hypothetical protein MED92_07796 [Oceanospirillum sp. MED92]
          Length = 455

 Score =  379 bits (974), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 200/447 (44%), Positives = 284/447 (63%), Gaps = 13/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ F+K++GCQMN YDS RM D+   S   E     DDAD+++LNTC IREKA EKV+  
Sbjct: 3   KKLFIKTHGCQMNEYDSARMADLLGESHDLELTEDADDADVLLLNTCSIREKAQEKVFHQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-ER 142
           LGR R LK +      +L + V GCVA  EG+ IL+R+P V+++ GPQT +RLPE++ E 
Sbjct: 63  LGRWRKLKEN----NPNLKIGVGGCVASQEGDNILKRAPYVDMIFGPQTLHRLPEMITET 118

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
              G  +VD  +   +KF+ L        +  G  AF+++ EGC K+CTFCVVPYTRG E
Sbjct: 119 GAGGVGIVDVSFPEIEKFDHLPA-----PKVEGAEAFVSVMEGCSKYCTFCVVPYTRGEE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR L  V+ E  +L + GV E+ LLGQNVNA+ G+  DG+    ++L+  ++ ++G+ R
Sbjct: 174 VSRPLDDVITECVELAEQGVREVNLLGQNVNAYLGETHDGDTADLAELIRCVAAVEGIDR 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP + +D LI+A+ D+  L+ +LHLPVQSGSD+IL +M R HTA EY+  I RI
Sbjct: 234 IRFTTSHPVEFTDSLIEAYEDVPELVSFLHLPVQSGSDKILMAMKRGHTALEYKSKIRRI 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R  RPDI ISSDFI+GFP ETD DF ATM L++ IG+  ++SF YS R GTP S++ + +
Sbjct: 294 RKARPDIEISSDFIIGFPNETDTDFAATMKLIEDIGFDNSYSFIYSRRPGTPASDLPDNI 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLN 441
           DE  K ERL  LQ ++ +     +   VG    +L+  +  K+ G L GR+   + V   
Sbjct: 354 DEETKKERLKILQSRIIQNAQLISRRMVGSTQTILVNGYSKKDPGLLSGRTENNRVVNFR 413

Query: 442 SKNHN-IGDIIKVRITDVKISTLYGEL 467
             N + IG    V I +   ++L G+L
Sbjct: 414 CDNPDLIGHFADVEIVEAYANSLVGKL 440


>gi|291612929|ref|YP_003523086.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Sideroxydans
           lithotrophicus ES-1]
 gi|291583041|gb|ADE10699.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Sideroxydans
           lithotrophicus ES-1]
          Length = 446

 Score =  379 bits (974), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 207/449 (46%), Positives = 286/449 (63%), Gaps = 16/449 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +  +K+YGCQMN YDS +M D+  + +   + +  ++AD+I+ NTC IREKA EKV+S L
Sbjct: 7   KLHIKTYGCQMNEYDSDKMVDVLRACENMVQTDKPEEADIILFNTCSIREKAEEKVFSDL 66

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE-RA 143
           GR R LK +  +    LL+ V GCVA  EGE I++R+P V+VV GPQT +RLP+L+  R 
Sbjct: 67  GRARVLKQANPR----LLIGVGGCVASQEGEAIIKRAPYVDVVFGPQTLHRLPQLIAARR 122

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             GK  VD  +   +KF+ +      +      TAF++I EGC K+CTFCVVPYTRG E+
Sbjct: 123 ESGKPQVDISFPEIEKFDHVPAAQTTHG-----TAFVSIMEGCSKYCTFCVVPYTRGEEM 177

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR  + V+ E   LI  GV EITLLGQNVNA++G+  DG+   F+ LL +++ + G+ RL
Sbjct: 178 SRPYADVMREVESLIAQGVGEITLLGQNVNAYQGETDDGDTVDFAFLLQTVAALPGVQRL 237

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           RYTTSHPR+MS  LI  +     L  +LHLPVQSGSDRIL +M R +TA EY+ I+ ++R
Sbjct: 238 RYTTSHPREMSQRLIDLYATTPKLASHLHLPVQSGSDRILAAMKRGYTALEYKSIVRKLR 297

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           + RP+I+I+SDFIVGFPGETD DF ATM L+D + +  +FSF +S R GTP + M +   
Sbjct: 298 AARPEISITSDFIVGFPGETDADFEATMKLIDDVAFDASFSFIFSARPGTPAAEMADDTP 357

Query: 384 ENVKAERLLCLQKKLRE--QQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSVVL 440
              K  RL  LQ ++ E  QQVS  +A  G +  V++E    K + +L GR+   + V  
Sbjct: 358 YETKLARLHRLQARIAELGQQVS--EAMSGTVQRVVVENISRKSEHELAGRTANNRVVNF 415

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELVV 469
                 +G  + VRI    + TL GELV+
Sbjct: 416 VGSPGMLGRYVDVRILSGTLHTLRGELVM 444


>gi|169632399|ref|YP_001706135.1| putative tRNA-i(6)A37 modification enzyme (MiaB) [Acinetobacter
           baumannii SDF]
 gi|229890410|sp|B0VQX2|MIAB_ACIBS RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|169151191|emb|CAO99868.1| putative tRNA-i(6)A37 modification enzyme (MiaB) [Acinetobacter
           baumannii]
          Length = 483

 Score =  379 bits (974), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 199/455 (43%), Positives = 298/455 (65%), Gaps = 20/455 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ ++++ GCQMN YDS RM D+   S GY   N+ ++AD++++NTC IREKA EKV+S 
Sbjct: 31  KKLYIETQGCQMNEYDSHRMADLLGDSHGYVLTNNPNEADILLMNTCSIREKAQEKVFSE 90

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER- 142
           LGR R LK    ++  DL++ V GCVA  EG+ I +R+P V+++ GPQT +RLP++L++ 
Sbjct: 91  LGRWRKLK----EQNPDLVIGVGGCVASQEGDNIQKRAPYVDMIFGPQTLHRLPQMLDQH 146

Query: 143 -ARFGK------RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
            A+  K      ++VD  +   +KF+ L        R  G  AF++I EGC K+C+FCVV
Sbjct: 147 HAQVEKPKKEKIKLVDISFPDIEKFDFLP-----EPRVEGFKAFVSIMEGCSKYCSFCVV 201

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
           PYTRG E+SR L  V+ E   L + GV EI+LLGQNVN +RG+  +G  CTF +LL  ++
Sbjct: 202 PYTRGEEVSRPLDDVLAEIAGLAEKGVREISLLGQNVNGYRGETFEGGICTFPELLRLVA 261

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
           EI G+ RLRYTTSHP + SD LI+ + DL  ++ +LHLPVQSGS+ +LK+M R HT   Y
Sbjct: 262 EIPGIGRLRYTTSHPLEFSDELIQCYEDLPQMVSHLHLPVQSGSNDVLKAMKRNHTIDVY 321

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
              I ++R +RPD+ +SSDFI+GFPGETD++F  T+  +  +G+  ++SF YS R GTP 
Sbjct: 322 IDKIAKLRKIRPDMHLSSDFIIGFPGETDENFAETLQFIKDLGFDHSYSFVYSKRPGTPA 381

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPW 434
           S++ +   E+VK ERL  +Q+ +++  +   DA +G+I  VLIEK   ++   LVG +  
Sbjct: 382 SDLPDTTPEHVKKERLAQVQQVIKQSSIEKTDAMLGKIERVLIEKVSDQDPNILVGTADN 441

Query: 435 LQSVVLNSKNHNIGDIIKVRITDVK-ISTLYGELV 468
            + V        +G   ++ IT++K ++ +YGEL+
Sbjct: 442 TRLVTFVGDASRVGRFAEIEITEIKTLNLVYGELL 476


>gi|119470866|ref|ZP_01613477.1| involved in methylthiolation of isopentenylated A37 derivatives in
           tRNA, Fe-S protein [Alteromonadales bacterium TW-7]
 gi|119446093|gb|EAW27372.1| involved in methylthiolation of isopentenylated A37 derivatives in
           tRNA, Fe-S protein [Alteromonadales bacterium TW-7]
          Length = 482

 Score =  379 bits (974), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 196/448 (43%), Positives = 290/448 (64%), Gaps = 13/448 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS +M ++   + GY+      DAD+I+LNTC IREKA EKV+  
Sbjct: 3   KKLHIKTWGCQMNEYDSQKMAELLDATNGYQLTEDATDADVILLNTCSIREKAQEKVFHQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK+ +     +L++ V GCVA  EG+ I +R+P V+V+ GPQT +RLPE++++ 
Sbjct: 63  LGRWKLLKDDK----PELIIGVGGCVASQEGDSIRQRAPFVDVIFGPQTLHRLPEMIKQV 118

Query: 144 RF--GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           +   G  VVD  +   +KF+RL        +  G +AF++I EGC K+CTFCVVPYTRG 
Sbjct: 119 QGNKGSSVVDISFPEIEKFDRLP-----EPKAEGPSAFVSIMEGCSKYCTFCVVPYTRGE 173

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E+SR +  V+ E  +L + GV E+ LLGQNVNA+RG   DG+ C FSDL+  ++ I G+ 
Sbjct: 174 EVSRPVDDVLLEVAQLAEQGVREVNLLGQNVNAYRGDTHDGDICYFSDLIRLIAAIDGID 233

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+RYTTSHP + +  +I A+ D+  L+ +LHLPVQSGSDRIL  M R HTA EY+  I +
Sbjct: 234 RIRYTTSHPVEFTPDIIDAYADVPELVDHLHLPVQSGSDRILNLMKRGHTALEYKSTIRK 293

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R +RP++++SSDFI+GFPGE+  DF ATM+L++ IG+  +FSF YS R GTP +++ + 
Sbjct: 294 LRKIRPNLSMSSDFIIGFPGESKADFEATMNLINDIGFDMSFSFIYSARPGTPAADLPDD 353

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLVGRSPWLQSVVL 440
           V E  K ERL  LQ ++ +     +         +L+E   K+   +L GR+   + V  
Sbjct: 354 VTEQEKKERLYLLQNRITQMAQHISRQMFDTEQRILVEGPSKKNPMELRGRTENNRVVNF 413

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
              +  IG  + VRIT+   ++L G+L+
Sbjct: 414 VGPHSVIGQFVDVRITEALPNSLRGDLI 441


>gi|188534464|ref|YP_001908261.1| Putative tRNA-thiotransferase [Erwinia tasmaniensis Et1/99]
 gi|188029506|emb|CAO97383.1| Putative tRNA-thiotransferase [Erwinia tasmaniensis Et1/99]
          Length = 480

 Score =  379 bits (973), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 197/448 (43%), Positives = 289/448 (64%), Gaps = 14/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS +M D+  S  GY      +DAD+++LNTC IREKA EKV++ 
Sbjct: 9   KKLHIKTWGCQMNEYDSSKMADLLNSTHGYTLTEQAEDADVLLLNTCSIREKAQEKVFAL 68

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK S      D+++ V GCVA  EG +I +R+  V++V GPQT +RLPE++   
Sbjct: 69  LGRWKKLKES----NPDMIIGVGGCVASQEGAQIRQRASCVDIVFGPQTLHRLPEMINSV 124

Query: 144 RFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           R G R  VVD  +   +KF+R+        R  G TAF++I EGC+K+CTFCVVPYTRG 
Sbjct: 125 R-GTRSPVVDVSFPEIEKFDRMP-----EPRADGPTAFVSIMEGCNKYCTFCVVPYTRGE 178

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E+SR    ++ E  +L   GV E+ LLGQNVNA+RG+  DG  C+F++LL  ++ I G+ 
Sbjct: 179 EVSRPSDDILFEVAQLAAQGVREVNLLGQNVNAYRGETFDGGICSFAELLRLVAAIDGID 238

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHP + +D +I  + D   L+ +LHLPVQSG+DRIL  M R HTA EY+ II +
Sbjct: 239 RIRFTTSHPIEFNDDIIDVYRDTPELVSFLHLPVQSGADRILTLMKRAHTALEYKAIIRK 298

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           + + RP+I ISSDFI+GFPGET  DF  TM L+ +I +  ++SF YS R GTP +++ + 
Sbjct: 299 LLAARPNIQISSDFIIGFPGETQADFEQTMKLIGEINFDISYSFIYSARPGTPAADLPDD 358

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVL 440
           V E+ K +RL  LQ ++ +Q  +++   +G +  +L+E   ++   +L GR+   + V  
Sbjct: 359 VSEDEKKQRLYILQDRINQQTTAWSRRKLGTVQRILVEGTSRKNVMELSGRTECNRVVNF 418

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                +IG  + V ITDV  ++L G L+
Sbjct: 419 EGSPEHIGKFVDVEITDVYANSLRGMLL 446


>gi|229890678|sp|Q3IK75|MIAB_PSEHT RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
          Length = 482

 Score =  379 bits (973), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 196/448 (43%), Positives = 288/448 (64%), Gaps = 13/448 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS +M ++   + GY+  +   DAD+I+LNTC IREKA EKV+  
Sbjct: 3   KKLHIKTWGCQMNEYDSQKMAELLDATNGYQLTDDATDADVILLNTCSIREKAQEKVFHQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK+ +     DL++ V GCVA  EG+ I +R+P V+V+ GPQT +RLPE++++ 
Sbjct: 63  LGRWKLLKDDK----PDLIIGVGGCVASQEGDSIRQRAPFVDVIFGPQTLHRLPEMIKQV 118

Query: 144 R--FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           +   G  VVD  +   +KF+RL        +  G +AF++I EGC K+CTFCVVPYTRG 
Sbjct: 119 QGDKGSSVVDISFPEIEKFDRLP-----EPKADGPSAFVSIMEGCSKYCTFCVVPYTRGE 173

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E+SR +  V+ E  +L +  V E+ LLGQNVNA+RG   DGE C FSDL+  ++ I G+ 
Sbjct: 174 EVSRPVDDVLLEIAQLAEQSVREVNLLGQNVNAYRGDTHDGEICYFSDLIRLIAAIDGID 233

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+RYTTSHP + +  ++  + D+  L+ +LHLPVQSGSDRIL  M R HTA EY+  I +
Sbjct: 234 RIRYTTSHPVEFTQDIVDVYADVPELVDHLHLPVQSGSDRILNLMKRGHTAIEYKSTIRK 293

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R +RP++++SSDFI+GFPGET DDF ATM L+  +G+  +FSF YS R GTP +++ + 
Sbjct: 294 LRKIRPNLSMSSDFIIGFPGETQDDFEATMKLISDVGFDMSFSFIYSARPGTPAADLPDD 353

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLVGRSPWLQSVVL 440
           V E  K ERL  LQ ++ +     +         +L+E   K+   +L GR+   + V  
Sbjct: 354 VTEQEKKERLYLLQNRITQMAQQISRQMFDTEQRILVEGPSKKNPMELRGRTENNRVVNF 413

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
              +  IG  + VRIT+   ++L G+L+
Sbjct: 414 VGPHTVIGQFVDVRITEALPNSLRGDLI 441


>gi|294669853|ref|ZP_06734912.1| hypothetical protein NEIELOOT_01746 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291308246|gb|EFE49489.1| hypothetical protein NEIELOOT_01746 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 440

 Score =  379 bits (973), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 200/450 (44%), Positives = 287/450 (63%), Gaps = 17/450 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQ--GYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           ++ F++++GCQMN YDS +M  +   +  G E+V   D+AD+I+ NTC +REKA EKV+S
Sbjct: 2   KKVFIRTFGCQMNEYDSEKMLSVLEEEHGGIEQVAEPDEADIILFNTCSVREKAQEKVFS 61

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE- 141
            LGR+R LK+ +     DL++ VAGCVA  EGE I++R+P V++V GPQT +RLP L++ 
Sbjct: 62  DLGRVRPLKDKK----PDLIIGVAGCVASQEGEAIVKRAPFVDIVFGPQTLHRLPRLIDD 117

Query: 142 RARFGKRVVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           +   G   VD  +   +KF+ L  + VDGG       +AF++I EGC K+C+FCVVPYTR
Sbjct: 118 KKETGLPQVDISFPEIEKFDHLPPARVDGG-------SAFISIMEGCSKYCSFCVVPYTR 170

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G E SR L+ V+ E   L   GV EI LLGQNVNA+RG   DGE C F+ LL  + EI G
Sbjct: 171 GEEFSRPLNDVLTEIAGLAQQGVKEINLLGQNVNAYRGLMDDGEVCDFATLLRIVHEIPG 230

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           + R+R+TTSHPR+ SD +I+ + DL  L+ +LHLP+QSGSDR+L +M R +TA EY+ II
Sbjct: 231 IERIRFTTSHPREFSDAIIECYRDLPKLVSHLHLPIQSGSDRVLSAMKRGYTALEYKSII 290

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            ++R++RPD+ +SSDFIVGFPGET+ +F  T+ LV  I +  +F F YSPR GTP +N+ 
Sbjct: 291 RKLRAIRPDLCLSSDFIVGFPGETEREFEQTLKLVKDIAFDLSFVFIYSPRPGTPAANLH 350

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSV 438
           +      K  RL  L + +  +    N   VG +   L+E    K+  +L  R+   + V
Sbjct: 351 DDTPHEEKVRRLEALNEVIEAETARINQTMVGTVQRCLVEGVSKKDPEQLQARTANNRVV 410

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468
                   I  +++++IT     +L GEL+
Sbjct: 411 NFVGNPELINQMVEIKITGAFTFSLRGELL 440


>gi|302185143|ref|ZP_07261816.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Pseudomonas
           syringae pv. syringae 642]
          Length = 442

 Score =  379 bits (973), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 199/448 (44%), Positives = 283/448 (63%), Gaps = 13/448 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ +++++GCQMN YDS RM D+    Q  E     +DAD+I+LNTC IRE+A ++VYS 
Sbjct: 3   KKLYIETHGCQMNEYDSSRMVDLLGEHQALEVTARAEDADVILLNTCSIRERAQDRVYSQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR R LK +      ++++ V GCVA  EG  I  R+P V+VV GPQT +RLPE+++ A
Sbjct: 63  LGRWRELKLA----NPEMVIAVGGCVASQEGAAIRDRAPYVDVVFGPQTLHRLPEMIDAA 118

Query: 144 RFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           R  +   VD  +   +KF+ L        R  G +A++++ EGC K+CTFCVVPYTRG E
Sbjct: 119 RVTRLPQVDVSFPEIEKFDHLP-----EPRVDGPSAYVSVMEGCSKYCTFCVVPYTRGEE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR    V+ E   L +NGV E+TLLGQNVN +RG   DG     +DL+  ++ + G+ R
Sbjct: 174 VSRPFDDVLSEVIHLAENGVREVTLLGQNVNGYRGTTHDGRVADLADLIRVVAAVDGIDR 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +RYTTSHP + SD LI+AH ++  L+ +LHLPVQSGSDRIL +M R HT  EY+  + ++
Sbjct: 234 IRYTTSHPLEFSDSLIQAHAEVPELVKHLHLPVQSGSDRILAAMKRNHTTLEYKSRLRKL 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+  P I+ISSDFIVGFPGET+ DF  TM L++ +G+  +FSF YSPR GTP +++ +  
Sbjct: 294 RAAVPGISISSDFIVGFPGETEKDFDNTMKLIEDVGFDFSFSFVYSPRPGTPAADLKDDT 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLN 441
            E +K ERL  LQ +L +Q    +   VG I  +L+  +  K+ G+L GR+   + V   
Sbjct: 354 PEALKKERLAALQHRLNQQGFEISRQMVGSIQRILVTDYSKKDPGELQGRTENNRIVNFR 413

Query: 442 SKNHN-IGDIIKVRITDVKISTLYGELV 468
             N   IG    V I D +  +L G L+
Sbjct: 414 CANPKLIGQFADVHIDDAQPHSLRGSLL 441


>gi|332532467|ref|ZP_08408345.1| tRNA-i(6)A37 methylthiotransferase [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332038110|gb|EGI74557.1| tRNA-i(6)A37 methylthiotransferase [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 482

 Score =  379 bits (973), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 197/448 (43%), Positives = 288/448 (64%), Gaps = 13/448 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS +M ++   + GY+      DAD+I+LNTC IREKA EKV+  
Sbjct: 3   KKLHIKTWGCQMNEYDSQKMAELLDATNGYQLTEDATDADVILLNTCSIREKAQEKVFHQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK+ +     DL++ V GCVA  EG+ I +R+P V+V+ GPQT +RLPE++++ 
Sbjct: 63  LGRWKLLKDDK----PDLIIGVGGCVASQEGDSIRQRAPFVDVIFGPQTLHRLPEMIKQV 118

Query: 144 R--FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           +   G  VVD  +   +KF+RL        +  G +AF++I EGC K+CTFCVVPYTRG 
Sbjct: 119 QGDKGSSVVDISFPEIEKFDRLP-----EPKADGPSAFVSIMEGCSKYCTFCVVPYTRGE 173

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E+SR +  V+ E  +L + GV E+ LLGQNVNA+RG   DGE C FSDL+  ++ I G+ 
Sbjct: 174 EVSRPVDDVLLEVAQLAEQGVREVNLLGQNVNAYRGDTHDGEICYFSDLIRLIAAIDGID 233

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+RYTTSHP + +  +I  + D+  L+ +LHLPVQSGSDRIL  M R HTA EY+  I +
Sbjct: 234 RIRYTTSHPVEFTPDIIDVYADVPELVDHLHLPVQSGSDRILNLMKRGHTAIEYKSTIRK 293

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R +RP++++SSDFI+GFPGE+ +DF ATM L+  IG+  +FSF YS R GTP +++ + 
Sbjct: 294 LRKIRPNLSMSSDFIIGFPGESKEDFEATMKLISDIGFDMSFSFIYSARPGTPAADLPDD 353

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLVGRSPWLQSVVL 440
           V E  K ERL  LQ ++ +     +         +L+E   K+   +L GR+   + V  
Sbjct: 354 VTEQEKKERLYLLQNRITQMAQQISRQMFDTEQRILVEGPSKKNPMELRGRTENNRVVNF 413

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
              +  IG  + VRIT+   ++L G+L+
Sbjct: 414 VGPHTVIGQFVDVRITEALPNSLRGDLI 441


>gi|320322684|gb|EFW78777.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Pseudomonas
           syringae pv. glycinea str. B076]
 gi|320330531|gb|EFW86510.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Pseudomonas
           syringae pv. glycinea str. race 4]
 gi|330873660|gb|EGH07809.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Pseudomonas
           syringae pv. glycinea str. race 4]
          Length = 442

 Score =  379 bits (973), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 199/448 (44%), Positives = 283/448 (63%), Gaps = 13/448 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ +++++GCQMN YDS RM D+    Q  E     +DAD+I+LNTC IRE+A ++VYS 
Sbjct: 3   KKLYIETHGCQMNEYDSSRMVDLLGEHQALEVTARAEDADVILLNTCSIRERAQDRVYSQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR R LK +      ++++ V GCVA  EG  I  R+P V+VV GPQT +RLPE+++ A
Sbjct: 63  LGRWRELKLA----NPEMVIAVGGCVASQEGAAIRDRAPYVDVVFGPQTLHRLPEMIDVA 118

Query: 144 RFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           R  +   VD  +   +KF+ L        R  G +A++++ EGC K+CTFCVVPYTRG E
Sbjct: 119 RITRLPQVDVSFPEIEKFDHLP-----EPRVDGPSAYVSVMEGCSKYCTFCVVPYTRGEE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR    V+ E   L +NGV E+TLLGQNVN +RG   DG     +DL+  ++ + G+ R
Sbjct: 174 VSRPFDDVLSEVIHLAENGVREVTLLGQNVNGYRGTTHDGRVADLADLIRVVAAVDGIDR 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +RYTTSHP + SD LI+AH ++  L+ +LHLPVQSGSDRIL +M R HT  EY+  + ++
Sbjct: 234 IRYTTSHPLEFSDSLIQAHAEVPELVKHLHLPVQSGSDRILAAMKRNHTTLEYKSRLRKL 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+  P I+ISSDFIVGFPGET+ DF  TM L++ +G+  +FSF YSPR GTP +++ +  
Sbjct: 294 RAAVPGISISSDFIVGFPGETEKDFDNTMKLIEDVGFDFSFSFVYSPRPGTPAADLKDDT 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLN 441
            E +K ERL  LQ +L +Q    +   VG I  +L+  +  K+ G+L GR+   + V   
Sbjct: 354 PEALKKERLAALQHRLNQQGFEISRQMVGSIQRILVTDYSKKDPGELQGRTENNRIVNFR 413

Query: 442 SKNHN-IGDIIKVRITDVKISTLYGELV 468
             N   IG    V I D +  +L G L+
Sbjct: 414 CNNPKLIGQFADVHIDDAQPHSLRGSLL 441


>gi|29653907|ref|NP_819599.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Coxiella burnetii RSA
           493]
 gi|153208814|ref|ZP_01947041.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Coxiella burnetii 'MSU
           Goat Q177']
 gi|161830593|ref|YP_001596498.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Coxiella
           burnetii RSA 331]
 gi|165919097|ref|ZP_02219183.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Coxiella burnetii RSA
           334]
 gi|212212941|ref|YP_002303877.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Coxiella
           burnetii CbuG_Q212]
 gi|212218810|ref|YP_002305597.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Coxiella
           burnetii CbuK_Q154]
 gi|81629338|sp|Q83DX3|MIAB_COXBU RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|229890502|sp|B6J853|MIAB_COXB1 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|229890503|sp|B6J1A4|MIAB_COXB2 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|229890505|sp|A9NC58|MIAB_COXBR RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|29541170|gb|AAO90113.1| tRNA 2-methylthioadenosine synthase [Coxiella burnetii RSA 493]
 gi|120575720|gb|EAX32344.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Coxiella burnetii 'MSU
           Goat Q177']
 gi|161762460|gb|ABX78102.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Coxiella burnetii RSA
           331]
 gi|165917231|gb|EDR35835.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Coxiella burnetii RSA
           334]
 gi|212011351|gb|ACJ18732.1| tRNA 2-methylthioadenosine synthase [Coxiella burnetii CbuG_Q212]
 gi|212013072|gb|ACJ20452.1| tRNA 2-methylthioadenosine synthase [Coxiella burnetii CbuK_Q154]
          Length = 439

 Score =  379 bits (973), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 198/446 (44%), Positives = 282/446 (63%), Gaps = 12/446 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ ++K++GCQMN YDS +M D+  FS G E       AD+ +LNTC +REKA  KV+S 
Sbjct: 2   KKLYLKTHGCQMNEYDSAKMADVLKFSHGLELTEDPAVADVFLLNTCSVREKAQTKVFSE 61

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR R  K  R      +++ V GCVA  EGE IL+++P V++V GPQT +RLP+LL+  
Sbjct: 62  LGRWRPFKEKR----PHVVIGVGGCVASQEGETILKQAPFVDIVFGPQTLHRLPDLLDSV 117

Query: 144 -RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            +  K VVD  +   +KF+RL        R  G +AF++I EGC K+CTFCVVPYTRG E
Sbjct: 118 IQKRKSVVDITFPEIEKFDRLP-----QPRAEGPSAFVSIMEGCSKYCTFCVVPYTRGEE 172

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           ISR    V+ E   L + GV EITLLGQNVN +RG   DG+    + L++ L+ +  + R
Sbjct: 173 ISRPFDDVIAEVASLCEQGVREITLLGQNVNDYRGLMHDGQVADLALLIHYLAAMDNIER 232

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP   S+ LI A+ +   L  +LHLPVQSGSDRIL +M R +T  EY+  I ++
Sbjct: 233 IRFTTSHPSAFSENLIDAYAEEPKLANHLHLPVQSGSDRILAAMKRNYTVLEYKSKIRKL 292

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+VRPDI++SSDFI+GFPGETD DF ATM+L+  +G+  +FSF YSPR GTP + + + V
Sbjct: 293 RAVRPDISLSSDFIIGFPGETDADFEATMNLIHDMGFDHSFSFIYSPRPGTPAAQLPDDV 352

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRSPWLQSVVLN 441
              VK ERL  LQ ++  +    + + VG    +L+    K+   +L GR+   + V  N
Sbjct: 353 PMAVKKERLAILQNRINAKAAEISQSMVGTQQRILVTGPSKKYPDQLSGRTENNRVVNFN 412

Query: 442 SKNHNIGDIIKVRITDVKISTLYGEL 467
                IG ++ ++I + +  +L+GE+
Sbjct: 413 GDTPLIGQMVTIKIKEARPYSLWGEI 438


>gi|206559304|ref|YP_002230065.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Burkholderia
           cenocepacia J2315]
 gi|229890458|sp|B4EBG2|MIAB_BURCJ RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|198035342|emb|CAR51217.1| putative tRNA thiotransferase protein MiaB [Burkholderia
           cenocepacia J2315]
          Length = 457

 Score =  379 bits (973), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 201/454 (44%), Positives = 294/454 (64%), Gaps = 18/454 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ +VK++GCQMN YDS +M D+   ++G E+ ++ +DAD+I+ NTC +REKA EKV+S 
Sbjct: 3   KKVYVKTFGCQMNEYDSDKMVDVLNAAEGLEKTDTPEDADIILFNTCSVREKAQEKVFSD 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR+R LK +  K G  LL+ V GCVA  EG  I+ R+P V++V GPQT +RLP++++  
Sbjct: 63  LGRVRELKEA--KPG--LLIGVGGCVASQEGASIVSRAPYVDLVFGPQTLHRLPQMIDAR 118

Query: 144 RF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           R  G+  VD  +   +KF+ L        R  G +AF++I EGC K+C++CVVPYTRG E
Sbjct: 119 RASGRAQVDITFPEIEKFDHLPPA-----RVEGPSAFVSIMEGCSKYCSYCVVPYTRGDE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG--EKCTFSDLLYSLSEIKGL 260
           +SR L  V+ E   L D GV E+TLLGQNVNA+RG    G  E   F+ L+  +++I G+
Sbjct: 174 VSRPLDDVLTEVAGLADQGVREVTLLGQNVNAYRGALAAGSSEIADFATLIEYVADIPGI 233

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+RYTTSHP++ +  LI  +  +  L+ +LHLPVQ GSDRIL +M R +T  EY+ +I 
Sbjct: 234 ERIRYTTSHPKEFTQRLIDTYAKVPKLVNHLHLPVQHGSDRILMAMKRGYTVLEYKSVIR 293

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R++RPD+++S+D IVGFPGET+DDF   M LV ++GY  +FSF YSPR GTP +N+ +
Sbjct: 294 KLRAIRPDLSLSTDMIVGFPGETEDDFDKMMALVHEMGYDTSFSFIYSPRPGTPAANLAD 353

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSV- 438
               +VK +RL  LQ  + E     + + VG++  +L+E    K+  +L GR+   + V 
Sbjct: 354 DTPRDVKLKRLQHLQATIEENVARISQSMVGKVERILVEGPSRKDPNELAGRTENNRVVN 413

Query: 439 ---VLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
               L S    IG +I V+I      +L GELV+
Sbjct: 414 FPAPLASHPRLIGQMIDVKINHAYPHSLRGELVI 447


>gi|291085698|ref|ZP_06353781.2| tRNA-I(6)A37 thiotransferase enzyme MiaB [Citrobacter youngae ATCC
           29220]
 gi|291070181|gb|EFE08290.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Citrobacter youngae ATCC
           29220]
          Length = 490

 Score =  379 bits (973), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 192/449 (42%), Positives = 291/449 (64%), Gaps = 14/449 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS +M D+   + GY+  +  ++AD+++LNTC IREKA EKV+  
Sbjct: 17  KKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTDVAEEADVLLLNTCSIREKAQEKVFHQ 76

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK    ++  +L++ V GCVA  EG+ I +R+  V+++ GPQT +RLPE++ + 
Sbjct: 77  LGRWKLLK----EKNPNLIIGVGGCVASQEGDHIRQRAHYVDIIFGPQTLHRLPEMINKV 132

Query: 144 RFGKR---VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           R       VVD  +   +KF+RL        R  G +AF++I EGC+K+CT+CVVPYTRG
Sbjct: 133 RGSTSRSPVVDISFPEIEKFDRLP-----EPRAEGPSAFVSIMEGCNKYCTYCVVPYTRG 187

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR    ++ E  +L   GV E+ LLGQNVNAWRG+  DG   +F+DLL  ++ I G+
Sbjct: 188 EEVSRPADDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTTGSFADLLRLVAAIDGI 247

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+TTSHP + +D +++ + D   L+ +LHLPVQSGSDR+L  M R HTA EY+ II 
Sbjct: 248 DRIRFTTSHPIEFTDDIVEVYRDTPELVSFLHLPVQSGSDRVLNLMGRTHTALEYKAIIR 307

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R+ RPDI ISSDFIVGFPGET  DF  TM L+  + +  ++SF +S R GTP ++M++
Sbjct: 308 KLRAARPDIQISSDFIVGFPGETTQDFEQTMKLIADVNFDMSYSFIFSARPGTPAADMVD 367

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439
            V E  K +RL  LQ+++ +Q ++++   VG    +L+E   ++   +L GR+   + V 
Sbjct: 368 DVPEEEKKQRLYILQERINQQAMAWSRRMVGTTQRILVEGTSRKSIMELSGRTENNRVVN 427

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  +G  + V ITDV  ++L G++V
Sbjct: 428 FEGAPEMVGKFVDVEITDVWTNSLRGKVV 456


>gi|66047572|ref|YP_237413.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Pseudomonas
           syringae pv. syringae B728a]
 gi|75500577|sp|Q4ZN97|MIAB_PSEU2 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|63258279|gb|AAY39375.1| Protein of unknown function UPF0004:tRNA-i(6)A37 modification
           enzyme MiaB [Pseudomonas syringae pv. syringae B728a]
 gi|330953005|gb|EGH53265.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Pseudomonas
           syringae Cit 7]
 gi|330969456|gb|EGH69522.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Pseudomonas
           syringae pv. aceris str. M302273PT]
          Length = 442

 Score =  379 bits (973), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 199/448 (44%), Positives = 283/448 (63%), Gaps = 13/448 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ +++++GCQMN YDS RM D+    Q  E     +DAD+I+LNTC IRE+A ++VYS 
Sbjct: 3   KKLYIETHGCQMNEYDSSRMVDLLGEHQALEVTARAEDADVILLNTCSIRERAQDRVYSQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR R LK +      ++++ V GCVA  EG  I  R+P V+VV GPQT +RLPE+++ A
Sbjct: 63  LGRWRELKLA----NPEMVIAVGGCVASQEGAAIRDRAPYVDVVFGPQTLHRLPEMIDAA 118

Query: 144 RFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           R  +   VD  +   +KF+ L        R  G +A++++ EGC K+CTFCVVPYTRG E
Sbjct: 119 RVTRLPQVDVSFPEIEKFDHLP-----EPRVDGPSAYVSVMEGCSKYCTFCVVPYTRGEE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR    V+ E   L +NGV E+TLLGQNVN +RG   DG     +DL+  ++ + G+ R
Sbjct: 174 VSRPFDDVLSEVIHLAENGVREVTLLGQNVNGYRGTTHDGRVADLADLIRVVAAVDGIDR 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +RYTTSHP + SD LI+AH ++  L+ +LHLPVQSGSDRIL +M R HT  EY+  + ++
Sbjct: 234 IRYTTSHPLEFSDSLIQAHAEVPELVKHLHLPVQSGSDRILAAMKRNHTTLEYKSRLRKL 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+  P I+ISSDFIVGFPGET+ DF  TM L++ +G+  +FSF YSPR GTP +++ +  
Sbjct: 294 RAAVPGISISSDFIVGFPGETEKDFDNTMKLIEDVGFDFSFSFVYSPRPGTPAADLKDDT 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLN 441
            E +K ERL  LQ +L +Q    +   VG I  +L+  +  K+ G+L GR+   + V   
Sbjct: 354 PEALKKERLAALQHRLNQQGFEISRQMVGSIQRILVTDYSKKDPGELQGRTENNRIVNFR 413

Query: 442 SKNHN-IGDIIKVRITDVKISTLYGELV 468
             N   IG    V I D +  +L G L+
Sbjct: 414 CDNPKLIGQFADVHIDDAQPHSLRGSLL 441


>gi|229890685|sp|B2VBL4|MIAB_ERWT9 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
          Length = 474

 Score =  379 bits (973), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 197/448 (43%), Positives = 289/448 (64%), Gaps = 14/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS +M D+  S  GY      +DAD+++LNTC IREKA EKV++ 
Sbjct: 3   KKLHIKTWGCQMNEYDSSKMADLLNSTHGYTLTEQAEDADVLLLNTCSIREKAQEKVFAL 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK S      D+++ V GCVA  EG +I +R+  V++V GPQT +RLPE++   
Sbjct: 63  LGRWKKLKES----NPDMIIGVGGCVASQEGAQIRQRASCVDIVFGPQTLHRLPEMINSV 118

Query: 144 RFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           R G R  VVD  +   +KF+R+        R  G TAF++I EGC+K+CTFCVVPYTRG 
Sbjct: 119 R-GTRSPVVDVSFPEIEKFDRMP-----EPRADGPTAFVSIMEGCNKYCTFCVVPYTRGE 172

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E+SR    ++ E  +L   GV E+ LLGQNVNA+RG+  DG  C+F++LL  ++ I G+ 
Sbjct: 173 EVSRPSDDILFEVAQLAAQGVREVNLLGQNVNAYRGETFDGGICSFAELLRLVAAIDGID 232

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHP + +D +I  + D   L+ +LHLPVQSG+DRIL  M R HTA EY+ II +
Sbjct: 233 RIRFTTSHPIEFNDDIIDVYRDTPELVSFLHLPVQSGADRILTLMKRAHTALEYKAIIRK 292

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           + + RP+I ISSDFI+GFPGET  DF  TM L+ +I +  ++SF YS R GTP +++ + 
Sbjct: 293 LLAARPNIQISSDFIIGFPGETQADFEQTMKLIGEINFDISYSFIYSARPGTPAADLPDD 352

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVL 440
           V E+ K +RL  LQ ++ +Q  +++   +G +  +L+E   ++   +L GR+   + V  
Sbjct: 353 VSEDEKKQRLYILQDRINQQTTAWSRRKLGTVQRILVEGTSRKNVMELSGRTECNRVVNF 412

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                +IG  + V ITDV  ++L G L+
Sbjct: 413 EGSPEHIGKFVDVEITDVYANSLRGMLL 440


>gi|56460049|ref|YP_155330.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Idiomarina
           loihiensis L2TR]
 gi|81363034|sp|Q5QYC5|MIAB_IDILO RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|56179059|gb|AAV81781.1| 2-methylthioadenine synthetase [Idiomarina loihiensis L2TR]
          Length = 479

 Score =  379 bits (973), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 202/447 (45%), Positives = 294/447 (65%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ ++K++GCQMN YDS +M ++  S  GY+     +DADLI+LNTC IREKA EKV+  
Sbjct: 3   KKLYIKTWGCQMNEYDSTKMAELLHSTHGYDVAEEAEDADLILLNTCSIREKAQEKVFHQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER- 142
           LGR +NLK    K   +LL+ V GCVA  EG EI  R+P V+++ GPQT +RLPE++ + 
Sbjct: 63  LGRWKNLK----KNNPNLLIGVGGCVASQEGNEIRARAPFVDIIFGPQTLHRLPEMVNQV 118

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           +     +VD  +   +KF+RL+       +  G +AF++I EGC K+C+FCVVPYTRG E
Sbjct: 119 SETHAPMVDVSFPEIEKFDRLA-----EPKADGASAFVSIMEGCSKYCSFCVVPYTRGEE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR +  V+ E  +L + GV E+ LLGQNVNA+RG+  DGE C F++LL+ ++ I G+ R
Sbjct: 174 VSRPVDDVIYEIAQLAEQGVREVNLLGQNVNAYRGEHYDGEVCRFAELLHLVAAIDGIDR 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +RYTTSHP + +D + +A+  +  L+ +LHLPVQSGSDRIL  M R HTA EY+  I  +
Sbjct: 234 IRYTTSHPVEFTDDITEAYKTIPELVSHLHLPVQSGSDRILTMMKRGHTALEYKSKIRAL 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           +  RPDIA+SSDFI+GFPGE+D DF ATMDL+  I +  +FSF YS R GTP +++ + +
Sbjct: 294 KKARPDIAMSSDFIIGFPGESDADFEATMDLIQSIDFDMSFSFIYSARPGTPAADLPDDI 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLVGRSPWLQSVVLN 441
            E  K +RL  LQ++L +Q ++     +     +L+    K+   +L GR+   + V   
Sbjct: 354 SEETKKKRLQLLQQRLNQQSMAHARRMLETEQRILVTGPSKKNPMELTGRTENNRVVNFV 413

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
            + H IG  + VRIT+V  ++L GEL+
Sbjct: 414 GQPHMIGQFVDVRITEVLPNSLRGELI 440


>gi|330445221|ref|ZP_08308873.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
 gi|328489412|dbj|GAA03370.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
          Length = 474

 Score =  379 bits (973), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 200/447 (44%), Positives = 289/447 (64%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS +M D+   + G+E     ++AD+++LNTC IREKA EKV+  
Sbjct: 3   KKLLIKTWGCQMNEYDSSKMADLLNAANGFELTEIPEEADVLLLNTCSIREKAQEKVFHQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK+ +     DL++ V GCVA  EG+ I +R+P V+V+ GPQT +RLPE+++++
Sbjct: 63  LGRWKTLKDKK----PDLVIGVGGCVATQEGDSIRQRAPYVDVIFGPQTLHRLPEMIKQS 118

Query: 144 RFG-KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           +     V+D  +   +KF+ L        R  G TAF++I EGC K+CT+CVVPYTRG E
Sbjct: 119 QSDDAPVMDISFPEIEKFDSLP-----EPRAEGATAFVSIMEGCSKYCTYCVVPYTRGEE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR L  V+ E  +L + GV E+ LLGQNVNA+RG   DGE  +F++LL  ++ I G+ R
Sbjct: 174 VSRPLDDVLFEIAQLAEQGVREVNLLGQNVNAYRGVMHDGEIASFAELLRLVAAIDGIDR 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +RYTTSHP + +D +I+ + D   L+ +LHLPVQSGSDRIL  M R HTA EY+  I ++
Sbjct: 234 IRYTTSHPIEFTDDIIEVYKDTPELVSFLHLPVQSGSDRILTMMKRPHTAIEYKSKIRKL 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R  RPDI ISSDFIV FPGETD DF+ TM L+  + +  +FSF +S R GTP ++    +
Sbjct: 294 RQARPDITISSDFIVAFPGETDQDFQDTMKLIRDVDFDMSFSFIFSARPGTPAADYPCDL 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441
            E VK ERL  LQ+++  Q + ++   +G    +L+E   K+   +L GR+   + V   
Sbjct: 354 TEEVKKERLYELQQQINTQAMRYSRQMLGTEQRILVEGPSKKNVMELRGRTENNRVVNFE 413

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                IG  + V+ITDV  ++L GELV
Sbjct: 414 GSADLIGQFVDVKITDVFTNSLRGELV 440


>gi|300705107|ref|YP_003746710.1| isopentenyl-adenosine a37 tRNA methylthiolase, Fe-S protein
           [Ralstonia solanacearum CFBP2957]
 gi|299072771|emb|CBJ44126.1| isopentenyl-adenosine A37 tRNA methylthiolase, Fe-S protein
           [Ralstonia solanacearum CFBP2957]
          Length = 460

 Score =  379 bits (972), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 203/455 (44%), Positives = 288/455 (63%), Gaps = 20/455 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ F+K++GCQMN YDS +M D+   ++G    ++ +DAD+I+ NTC +REKA EKV+S 
Sbjct: 2   KKVFIKTFGCQMNEYDSDKMADVLNAAEGLVPTDTPEDADVILFNTCSVREKAQEKVFSD 61

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE-R 142
           LGR++ LK        DL+V V GCVA  EG  I+ R+P V+VV GPQT +RLPEL++ R
Sbjct: 62  LGRVKALK----ALNPDLVVGVGGCVASQEGASIVARAPYVDVVFGPQTLHRLPELIDAR 117

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            R G+  VD  +   +KF+ L        R  G +AF++I EGC K+C++CVVPYTRG E
Sbjct: 118 RRTGRPQVDVSFPEIEKFDHLPPA-----RVEGPSAFVSIMEGCSKYCSYCVVPYTRGEE 172

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-GLDGEKCTFSDLLYSLSEIKGLV 261
           +SR    V+ E   L + GV E+TLLGQNVNA+ GK G   E+  F+ LL  ++EI G+ 
Sbjct: 173 VSRPFEDVLAEVAGLAEQGVREVTLLGQNVNAYVGKMGNTSERADFALLLEYVAEIPGIE 232

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+RYTTSHP++ +  LI+A+     L+ +LHLPVQ GSDRIL +M R +T  EY+ II +
Sbjct: 233 RIRYTTSHPKEFTSRLIEAYATNRKLVDHLHLPVQHGSDRILMAMKRGYTVLEYKSIIRK 292

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R++RPDI+I++D IVGFPGETD DF  TMDLV +IGY  +FSF YSPR GTP +N+ + 
Sbjct: 293 LRTIRPDISIATDIIVGFPGETDADFAKTMDLVHEIGYDNSFSFIYSPRPGTPAANLHDD 352

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSP------- 433
               VK ERL  LQ  +       ++  VG +  +L+E    K+  +L GR+        
Sbjct: 353 TPHAVKLERLKHLQATIDANMARISEGMVGSVQRILVEGPSRKDPSELHGRTENNRVVNF 412

Query: 434 WLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            L  +    ++  +G ++ VRI      +L GE+ 
Sbjct: 413 ALPDLPPARRDQLVGQMLDVRIVHAYPHSLRGEVA 447


>gi|94676510|ref|YP_588543.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Baumannia cicadellinicola
           str. Hc (Homalodisca coagulata)]
 gi|229890429|sp|Q1LU21|MIAB_BAUCH RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|94219660|gb|ABF13819.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Baumannia cicadellinicola
           str. Hc (Homalodisca coagulata)]
          Length = 451

 Score =  379 bits (972), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 198/446 (44%), Positives = 288/446 (64%), Gaps = 12/446 (2%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +  +K+YGCQMN YDS ++ D+   +  Y+  +  ++AD+++LNTC IREKA EK++  L
Sbjct: 4   KLHIKTYGCQMNQYDSSKIVDLLKNTHKYQLTDIAEEADILLLNTCSIREKAQEKLFHQL 63

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR R LK    K   +L++ V GCVA  EG  I  R+  V+++ GPQT +RLPE++   R
Sbjct: 64  GRWRRLK----KINPNLIIGVGGCVASQEGSNIRERANYVDIIFGPQTLHRLPEMINHVR 119

Query: 145 FGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             +  V+D  +   +KF+ +        + +G TAF++I EGCDK+C++CVVPYTRGIE+
Sbjct: 120 ITRSPVIDISFPEIEKFDCMP-----KPQAKGPTAFVSIIEGCDKYCSYCVVPYTRGIEV 174

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR    ++ E   L D  V EI LLGQNVNA+RG    G  CTF++LL  ++ I G+ R+
Sbjct: 175 SRPCEDILLEINNLADQNVREIHLLGQNVNAYRGTRYGGGTCTFAELLRLVAAINGIDRI 234

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+TTSHP + +D LI  + D   L+ ++HLPVQSGSDRIL  M R HT  EY+ II ++ 
Sbjct: 235 RFTTSHPIEFTDDLIDVYRDTPELVSFVHLPVQSGSDRILALMKRGHTVLEYKSIIRKLY 294

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           +VRP I ISSDFIVGFPGET++DFR TM+L+ ++ +  +FSF YSPR GTP +NM++ V 
Sbjct: 295 AVRPSIQISSDFIVGFPGETEEDFRQTMNLISEVNFDMSFSFIYSPRPGTPAANMVDIVS 354

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNS 442
           ++ K +RL  LQ+ +R+Q + F+ A  G +  +L+E   ++    L GR+   + V    
Sbjct: 355 QDEKKQRLYILQECIRKQAMKFSQAMKGTVQCILVEGTSRKNIMHLSGRTENNRVVNFIG 414

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
            N  IG  + V I DV  ++L GEL+
Sbjct: 415 NNGMIGQFVNVEIIDVYSNSLRGELI 440


>gi|330963484|gb|EGH63744.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Pseudomonas
           syringae pv. actinidiae str. M302091]
          Length = 442

 Score =  379 bits (972), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 199/448 (44%), Positives = 283/448 (63%), Gaps = 13/448 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ +++++GCQMN YDS RM D+    Q  E     +DAD+I+LNTC IRE+A ++VYS 
Sbjct: 3   KKLYIETHGCQMNEYDSSRMVDLLGEHQALEVTARAEDADVILLNTCSIRERAQDRVYSQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR R LK +      ++++ V GCVA  EG  I  R+P V+VV GPQT +RLPE+++ A
Sbjct: 63  LGRWRELKLA----NPEMVIAVGGCVASQEGAAIRDRAPYVDVVFGPQTLHRLPEMIDAA 118

Query: 144 RFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           R  +   VD  +   +KF+ L        R  G +A++++ EGC K+CTFCVVPYTRG E
Sbjct: 119 RITRLPQVDVSFPEIEKFDHLP-----EPRVDGPSAYVSVMEGCSKYCTFCVVPYTRGEE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR    V+ E   L ++GV E+TLLGQNVN +RG   DG     +DL+ +++ + G+ R
Sbjct: 174 VSRPFDDVLTEVTHLAEHGVREVTLLGQNVNGYRGTTYDGRVADLADLIRAVAVVDGIDR 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +RYTTSHP + SD LI+AH D+  L+ +LHLPVQSGSDRIL +M R HT  EY+  + ++
Sbjct: 234 IRYTTSHPLEFSDSLIQAHADVPELVKHLHLPVQSGSDRILAAMKRNHTTLEYKSRLRKL 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+  P I+ISSDFIVGFPGET+ DF  TM L++  G+  +FSF YSPR GTP +++ +  
Sbjct: 294 RAAVPGISISSDFIVGFPGETEKDFDNTMKLIEDAGFDFSFSFIYSPRPGTPAADLKDDT 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLN 441
            E +K ERL  LQ +L +Q    +   VG I  +L+  +  K+ G+L GR+   + V   
Sbjct: 354 PEALKKERLAALQHRLNQQGFEISRQMVGSIQRILVTDYSKKDPGELQGRTENNRIVNFR 413

Query: 442 SKNHN-IGDIIKVRITDVKISTLYGELV 468
             N   IG    V I D +  +L G L+
Sbjct: 414 CDNPRLIGQFADVHIDDAQPHSLRGSLL 441


>gi|238786071|ref|ZP_04630029.1| hypothetical protein yberc0001_25290 [Yersinia bercovieri ATCC
           43970]
 gi|238713010|gb|EEQ05064.1| hypothetical protein yberc0001_25290 [Yersinia bercovieri ATCC
           43970]
          Length = 486

 Score =  379 bits (972), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 197/449 (43%), Positives = 285/449 (63%), Gaps = 12/449 (2%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKV 80
           ++ ++  +K++GCQMN YDS +M D+  S  GY    + ++ADL++LNTC IREKA EKV
Sbjct: 12  LMTKKLHIKTWGCQMNEYDSSKMADLLASTHGYLLTETPEEADLLLLNTCSIREKAQEKV 71

Query: 81  YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140
           +S LG  + LK    ++  +L++ V GCVA  EGE + +R+P V+++ GPQT +RLPE++
Sbjct: 72  FSLLGHWKLLK----EKNPELIIGVGGCVASQEGEHLRQRAPCVDIIFGPQTLHRLPEMI 127

Query: 141 ERARFG-KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
              +     VVD  +   +KF+RL        R  G TAF++I EGC+K+CTFCVVPYTR
Sbjct: 128 NHVQGSHSSVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTFCVVPYTR 182

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G E+SR    ++ E  +L   GV E+ LLGQNVNA+RG   DG+ C+F++LL  ++ I G
Sbjct: 183 GEEVSRPSDDILFEIAQLAAQGVREVNLLGQNVNAYRGATYDGDICSFAELLRLVAAIDG 242

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           + R+R+TTSHP + +D +I  + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II
Sbjct: 243 IDRVRFTTSHPIEFTDDIIDVYRDTPELVSFLHLPVQSGSDRILTMMKRAHTALEYKAII 302

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            ++R  RP I ISSDFI+GFPGET  DF  TM LV  I +  ++SF YS R GTP +++ 
Sbjct: 303 RKLRQARPGIQISSDFIIGFPGETQQDFEQTMKLVADIRFDTSYSFIYSSRPGTPAADLP 362

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLVGRSPWLQSV 438
           + V E  K +RL  LQ+++ +Q +  +   +G +  +L+E   ++   +L GR+   + V
Sbjct: 363 DDVSEEEKKQRLHILQQRITQQAMEISREMIGTVQRILVEGPSRKNAMELAGRTENNRVV 422

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGEL 467
                   IG  + V I DV  S+L G L
Sbjct: 423 NFEGTPSMIGQFVDVEIIDVYASSLRGIL 451


>gi|269213889|ref|ZP_06158241.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Neisseria cinerea ATCC
           14685]
 gi|269145278|gb|EEZ71696.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Neisseria cinerea ATCC
           14685]
          Length = 518

 Score =  379 bits (972), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 197/448 (43%), Positives = 285/448 (63%), Gaps = 13/448 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQ--GYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           ++ F++++GCQMN YDS +M  +   +  G E+V   DDAD+I+ NTC +REKA EKV+S
Sbjct: 78  KKVFIRTFGCQMNEYDSEKMLSVLAEEHGGIEQVTQPDDADIILFNTCSVREKAQEKVFS 137

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-E 141
            LGR+R LK    ++  DL++ VAGCVA  EGE I++R+P V+VV GPQT +RLP+L+ +
Sbjct: 138 DLGRVRPLK----EKNPDLIIGVAGCVASQEGENIVKRAPYVDVVFGPQTLHRLPKLIVD 193

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           +   G   +D  +   +KF+ L        R  G +AF++I EGC K+C++CVVPYTRG 
Sbjct: 194 KETTGLSQIDISFPEIEKFDHLPPA-----RVEGGSAFISIMEGCSKYCSYCVVPYTRGE 248

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR L+ V+ E   L   GV EI LLGQNVNA+RG+  +GE C F+ LL  + EI G+ 
Sbjct: 249 EFSRPLNDVLTEIAGLAQQGVKEINLLGQNVNAYRGEMENGEICDFATLLRIVHEIPGIE 308

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           RLR+TTSHPR+ +D +I+ + DL  L+ +LHLP+QSGSDR+L +M R +TA EY+ II +
Sbjct: 309 RLRFTTSHPREFTDAIIECYRDLPKLVSHLHLPIQSGSDRVLSAMKRGYTALEYKSIIRK 368

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R++RPD+ +SSDFIVGFPGET+ +F  T+ LV  I +  +F F YSPR GTP +N+ + 
Sbjct: 369 LRAIRPDLCLSSDFIVGFPGETEREFEQTLKLVKDIAFDLSFVFIYSPRPGTPAANLHDD 428

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSVVL 440
                K  RL  L + +  +    N   VG +   L+E    K+  +L  R+   + V  
Sbjct: 429 TPHEEKVRRLEALNEVIEAETARINQTMVGTVQRCLVEGISKKDPDQLQARTANNRVVNF 488

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 I  +I + IT+    +L G++V
Sbjct: 489 TGTPDMINQMIDLEITEAYTFSLRGKVV 516


>gi|311108329|ref|YP_003981182.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Achromobacter
           xylosoxidans A8]
 gi|310763018|gb|ADP18467.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Achromobacter
           xylosoxidans A8]
          Length = 477

 Score =  379 bits (972), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 193/444 (43%), Positives = 292/444 (65%), Gaps = 13/444 (2%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           P++ +++++GCQMN YDS +M D+    QG E  ++ +DAD+I+ NTC +REKA EKV+S
Sbjct: 28  PRKLYIRTFGCQMNEYDSDKMADVLRGDQGLELTDNPEDADVILFNTCSVREKAQEKVFS 87

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            LGR+++LK    K   +L++ V GCVA  EGE I++R+P V+VV GPQT +RLP+L++R
Sbjct: 88  DLGRVQHLK----KTNPNLVIGVGGCVASQEGEAIVKRAPYVDVVFGPQTLHRLPDLIKR 143

Query: 143 AR-FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
            R  G+  VD  +   +KF+ +        R  G TAF++I EGC K+C+FCVVPYTRG 
Sbjct: 144 RRDEGRSQVDISFPEIEKFDNMPP-----PRVDGATAFVSIMEGCSKYCSFCVVPYTRGE 198

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK-CTFSDLLYSLSEIKGL 260
           E+SR    V+ E   L D GV E+TLLGQNVNA+RG+  D ++   F+ LL  + EI G+
Sbjct: 199 EVSRPFEDVLVEVADLADQGVKEVTLLGQNVNAYRGRMTDSDEIADFAMLLEYVHEIPGI 258

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+RYTTSHP++M+  ++ A+  L  L+ +LHLPVQ+GSDR+L  M R +T  E++ ++ 
Sbjct: 259 ERIRYTTSHPKEMTQRMVDAYARLPKLVSFLHLPVQAGSDRVLAGMKRGYTTLEFKSVVR 318

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           R+R+ RPD+ +SSDFIVGFPGET++DF  TM L++ +G+  +FSF YS R GTP +++ +
Sbjct: 319 RLRAARPDLTLSSDFIVGFPGETEEDFEKTMKLIEDVGFDTSFSFVYSRRPGTPAADLQD 378

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVV 439
              ++VK  RL  LQ  + EQ  +     +G    +L+E    ++  +L+GR+   + V 
Sbjct: 379 DTPQDVKLRRLQRLQALINEQAATIARNMIGTRQRLLVEGPSRRDPNELMGRTENNRIVN 438

Query: 440 LNSKNHNIGDIIKVRITDVKISTL 463
             +    IG ++ V IT+   ++L
Sbjct: 439 FAAPARLIGQMVDVIITEAHTNSL 462


>gi|302877837|ref|YP_003846401.1| RNA modification enzyme, MiaB family [Gallionella capsiferriformans
           ES-2]
 gi|302580626|gb|ADL54637.1| RNA modification enzyme, MiaB family [Gallionella capsiferriformans
           ES-2]
          Length = 443

 Score =  379 bits (972), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 198/447 (44%), Positives = 287/447 (64%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMED-MFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ ++K+YGCQMN YDS +M D M    G E+ + +++AD+I+ NTC IREKA EKV+S 
Sbjct: 2   KKLYIKTYGCQMNEYDSDKMADVMRACDGMEQTDKIEEADVILFNTCSIREKAEEKVFSD 61

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR+R LK +      +L++ V GCVA  EG+ I++R+P V+VV GPQT +RLPEL++  
Sbjct: 62  LGRVRPLKLA----NPNLVIGVGGCVASQEGDVIIKRAPYVDVVFGPQTLHRLPELIKAR 117

Query: 144 R-FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           R  G+  VD  +   +KF+ L             +AF++I EGC K+CTFCVVPYTRG E
Sbjct: 118 RDSGRAQVDISFPEIEKFDHLPT-----PVTTSASAFVSIMEGCSKYCTFCVVPYTRGEE 172

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR LS V+ +  +L   GV E+TL+GQNVNA+ G   D +   F+ L+ +++ +  + R
Sbjct: 173 VSRPLSDVMKDIEELTAQGVKEVTLIGQNVNAYAGLTEDDDTVDFAYLIQAIAALPEIAR 232

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +RY+TSHPRDMS  LI  +     L+ +LHLPVQSGSDR+L +M R HT  EY+ +I R+
Sbjct: 233 IRYSTSHPRDMSQRLIDVYATTPKLVSHLHLPVQSGSDRVLAAMKRGHTVLEYKSVIRRV 292

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R++RPD+ ++SDFIVGFPGET+ DF AT+ L++ IG+  +FS+ YSPR GTP + M +  
Sbjct: 293 RALRPDLCVTSDFIVGFPGETEADFEATLKLIEDIGFDNSFSYLYSPRPGTPAAEMHDDT 352

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSVVLN 441
              VK+ RL  LQ KL   +     A +G +  VL+E    K+  ++ GR+   + +   
Sbjct: 353 PLEVKSARLKRLQDKLSSLEDGVGQAMLGSVQRVLVEGISKKDLLEMAGRTDNNRVINFR 412

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                IG  + V++T+V   TL GEL 
Sbjct: 413 GSPGMIGRFVDVKVTEVVRHTLRGELA 439


>gi|213966835|ref|ZP_03394986.1| tRNA-i(6)A37 modification enzyme MiaB [Pseudomonas syringae pv.
           tomato T1]
 gi|301381966|ref|ZP_07230384.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Pseudomonas
           syringae pv. tomato Max13]
 gi|302058774|ref|ZP_07250315.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Pseudomonas
           syringae pv. tomato K40]
 gi|302135150|ref|ZP_07261140.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Pseudomonas
           syringae pv. tomato NCPPB 1108]
 gi|213928685|gb|EEB62229.1| tRNA-i(6)A37 modification enzyme MiaB [Pseudomonas syringae pv.
           tomato T1]
          Length = 442

 Score =  379 bits (972), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 199/448 (44%), Positives = 283/448 (63%), Gaps = 13/448 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ +++++GCQMN YDS RM D+    Q  E     +DAD+I+LNTC IRE+A ++VYS 
Sbjct: 3   KKLYIETHGCQMNEYDSSRMVDLLGEHQALEVTARAEDADVILLNTCSIRERAQDRVYSQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR R LK +      ++++ V GCVA  EG  I  R+P V+VV GPQT +RLPE+++ A
Sbjct: 63  LGRWRELKLA----NPEMVIAVGGCVASQEGAAIRDRAPYVDVVFGPQTLHRLPEMIDAA 118

Query: 144 RFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           R  +   VD  +   +KF+ L        R  G +A++++ EGC K+CTFCVVPYTRG E
Sbjct: 119 RITRLPQVDVSFPEIEKFDHLP-----EPRVDGPSAYVSVMEGCSKYCTFCVVPYTRGEE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR    V+ E   L ++GV E+TLLGQNVN +RG   DG     +DL+ +++ + G+ R
Sbjct: 174 VSRPFDDVLTEVTHLAEHGVREVTLLGQNVNGYRGTTHDGRVADLADLIRAVAVVDGIDR 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +RYTTSHP + SD LI+AH D+  L+ +LHLPVQSGSDRIL +M R HT  EY+  + ++
Sbjct: 234 IRYTTSHPLEFSDSLIQAHADVPELVKHLHLPVQSGSDRILAAMKRNHTTLEYKSRLRKL 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+  P I+ISSDFIVGFPGET+ DF  TM L++  G+  +FSF YSPR GTP +++ +  
Sbjct: 294 RAAVPGISISSDFIVGFPGETEKDFDNTMKLIEDAGFDFSFSFIYSPRPGTPAADLKDDT 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLN 441
            E +K ERL  LQ +L +Q    +   VG I  +L+  +  K+ G+L GR+   + V   
Sbjct: 354 PEALKKERLAALQHRLNQQGFEISRQMVGSIQRILVTDYSKKDPGELQGRTENNRIVNFR 413

Query: 442 SKNHN-IGDIIKVRITDVKISTLYGELV 468
             N   IG    V I D +  +L G L+
Sbjct: 414 CNNPRLIGQFADVHIDDAQPHSLRGSLL 441


>gi|33600343|ref|NP_887903.1| hypothetical protein BB1357 [Bordetella bronchiseptica RB50]
 gi|81431747|sp|Q7WMN3|MIAB_BORBR RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|33567942|emb|CAE31855.1| conserved hypothetical protein [Bordetella bronchiseptica RB50]
          Length = 475

 Score =  378 bits (971), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 195/447 (43%), Positives = 292/447 (65%), Gaps = 13/447 (2%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + +++++GCQMN YDS +M D+  + QG E  ++ +DAD+I+ NTC +REKA EKV+S L
Sbjct: 28  KLYIRTFGCQMNEYDSDKMADVLRADQGLELTDNPEDADVILFNTCSVREKAQEKVFSDL 87

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR+++LK    K+  +L++ V GCVA  EGE I++R+P V+VV GPQT +RLP+L++R R
Sbjct: 88  GRVQHLK----KQNPNLVIGVGGCVASQEGEAIVKRAPYVDVVFGPQTLHRLPDLIKRRR 143

Query: 145 F-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             G   VD  +   +KF+ L        R  G TAF++I EGC K+C+FCVVPYTRG E+
Sbjct: 144 AQGVSQVDISFPEIEKFDALPP-----PRVDGATAFVSIMEGCSKYCSFCVVPYTRGEEV 198

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-GLDGEKCTFSDLLYSLSEIKGLVR 262
           SR    V+ E   L D GV E+TLLGQNVNA+RG  G  GE   F+ LL  + EI G+ R
Sbjct: 199 SRPFDDVLLEVADLADQGVKEVTLLGQNVNAYRGAMGDSGEIADFAMLLEYVHEIPGIER 258

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +RYTTSHP++M+  ++ A+  L  L+ +LHLPVQ+GSDR+L +M R +TA E++ ++ R+
Sbjct: 259 IRYTTSHPKEMTQRMVDAYARLPKLVSFLHLPVQAGSDRVLAAMKRGYTALEFKSVVRRL 318

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+ RP + +SSDFIVGFPGET++DF+ TM L++ +G+  +FSF YS R GTP +++ +  
Sbjct: 319 RAARPSLTLSSDFIVGFPGETEEDFQKTMKLIEDVGFDTSFSFVYSRRPGTPAADLHDDT 378

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLN 441
            ++VK  RL  LQ  + +Q  +     +G    VL+E    ++  +L+GR+   + V   
Sbjct: 379 PQDVKLRRLQQLQALINQQAAAIAQGMIGTRQRVLVEGPSRRDPNELMGRTENNRIVNFP 438

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                IG ++ V +T    ++L G + 
Sbjct: 439 GVPRLIGHMVDVVVTHAHTNSLRGRVA 465


>gi|557263|emb|CAA57577.1| hypothetical protein [Pseudomonas aeruginosa PAO1]
          Length = 446

 Score =  378 bits (971), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 202/448 (45%), Positives = 281/448 (62%), Gaps = 13/448 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ F++++GCQMN YDS RM D+    Q  E   +  +AD+I+LNTC IREK  EKV S 
Sbjct: 3   KKLFIETHGCQMNEYDSSRMADLLGEHQALEVTENAAEADVILLNTCSIREKVQEKVCSK 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LG  R LK    ++  DL++ V GCVA  EG  I  R+P V+VV GPQT +RLPE+++ A
Sbjct: 63  LGMWRELK----QQNPDLVIGVGGCVASQEGAAIRERAPYVDVVFGPQTLHRLPEMIDAA 118

Query: 144 RFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           R  ++  VD  +   +KF+RL        R  G TAF+++ EGC K+C+FCVVPYTRG E
Sbjct: 119 RSTRKPQVDVSFPEIEKFDRLP-----EPRVDGPTAFVSVMEGCSKYCSFCVVPYTRGEE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR    V+ E   L +NGV E+TLLGQNVN +RG   DG    F++LL  ++ + G+ R
Sbjct: 174 VSRPFDDVIAEVIHLAENGVREVTLLGQNVNGFRGLTHDGRLADFAELLRVVAAVDGIER 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +RYTTSHP + SD LI+AH ++  L+ ++HLPVQSGSDR+L +M R HT  EY+  I ++
Sbjct: 234 IRYTTSHPLEFSDALIQAHAEVPELVKFIHLPVQSGSDRVLAAMKRNHTVLEYKSRIRKL 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           ++  PDI ISSDFIVGFPGET+ DF  TM LV+ +G+  +FSF YS R GTP +++ + +
Sbjct: 294 KAAVPDICISSDFIVGFPGETEKDFEQTMKLVEDVGFDFSFSFIYSARPGTPAADLADDL 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRSPWLQSVVLN 441
            E VK +RL  LQ ++ +Q    +   VG    +L+    KE  G L GR+   + V   
Sbjct: 354 PEEVKKQRLQILQSRIHQQGYEISRRMVGSTQRILVTDFSKEDPGMLQGRTENNRIVNFR 413

Query: 442 SKNHN-IGDIIKVRITDVKISTLYGELV 468
             N   IG   +V I D    +L G L+
Sbjct: 414 CDNPRLIGQFAQVHIDDALPHSLRGTLI 441


>gi|56476163|ref|YP_157752.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Aromatoleum
           aromaticum EbN1]
 gi|81358300|sp|Q5P760|MIAB_AZOSE RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|56312206|emb|CAI06851.1| 2-methylthioadenine synthetase [Aromatoleum aromaticum EbN1]
          Length = 445

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 194/450 (43%), Positives = 293/450 (65%), Gaps = 14/450 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ +++++GCQMN YDS +M D+   S+   + ++ ++AD+I+ NTC +REKA E+V+  
Sbjct: 2   KKLYIRTFGCQMNEYDSDKMADVLGASEELVKTDNPEEADVILFNTCSVREKAQERVFHD 61

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-ER 142
           LGR+++LK S      +L++ V GCVA  EG+ I+ R+P V+VV GPQT +RLP+L+ ER
Sbjct: 62  LGRVKHLKQS----NPNLIIGVGGCVASQEGDAIVARAPYVDVVFGPQTLHRLPQLIAER 117

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
              G+  VD  +   +KF+ +        R  G +AF++I EGC K+CTFCVVPYTRG E
Sbjct: 118 RHSGRSQVDISFPEIEKFDNMPPA-----RVEGASAFVSIMEGCSKYCTFCVVPYTRGEE 172

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL--DGEKCTFSDLLYSLSEIKGL 260
           +SR L  V+ E   L   GV E+TLLGQNVNAWRG+     GE+  F+ LL  ++EI G+
Sbjct: 173 VSRPLDDVLAEVAGLAGQGVREVTLLGQNVNAWRGEITRDGGEQGDFAFLLECVAEIPGI 232

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            RLR+TTSHPR+M+  +  A+  +  L+ +LHLPVQSGSDRIL +M R ++  E++ ++ 
Sbjct: 233 ERLRFTTSHPREMTQRVFDAYAKIPKLVSHLHLPVQSGSDRILAAMKRGYSVLEFKSVVR 292

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R+ RPD+++SSDFIVGFPGET++DF  TM L+D++G+  +FSF YSPR GTP S++ +
Sbjct: 293 KLRAARPDLSLSSDFIVGFPGETEEDFEKTMKLIDEVGFDASFSFVYSPRPGTPASDLAD 352

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVV 439
            V +  K   L  LQK++ +Q  + + A VG++   L+E    K+  +L  R+   + V 
Sbjct: 353 PVPQETKLRWLARLQKRIDQQAQAISQAMVGRVERALVEGLSRKDATELAARTGNNRVVN 412

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELVV 469
                  IG  + + IT     +L GE+V 
Sbjct: 413 FVGNPRLIGQFVDLTITAALPHSLRGEIVT 442


>gi|85058789|ref|YP_454491.1| putative tRNA-thiotransferase [Sodalis glossinidius str.
           'morsitans']
 gi|123519811|sp|Q2NUT9|MIAB_SODGM RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|84779309|dbj|BAE74086.1| putative tRNA-thiotransferase [Sodalis glossinidius str.
           'morsitans']
          Length = 474

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 199/448 (44%), Positives = 285/448 (63%), Gaps = 14/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS +M D+  S  GY+  ++ ++AD+++LNTC IREKA EKV+  
Sbjct: 3   KKLHIKTWGCQMNEYDSSKMADLLDSTHGYQLTDNPEEADVLLLNTCSIREKAQEKVFHQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR   LK +R     +L++ V GCVA  EG  I  R+  V+++ GPQT +RLPE++   
Sbjct: 63  LGRWHMLKEAR----PELIIGVGGCVASQEGAHIRERANYVDIIFGPQTLHRLPEMINHV 118

Query: 144 RFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
             G R  VVD  +   +KF+RL        R  G TAF++I EGC+K+C+FCVVPYTRG 
Sbjct: 119 N-GTRSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCSFCVVPYTRGE 172

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E+SR    ++ E  +L D GV E+ LLGQNVNA+RG   DG  CTF++LL  ++ I G+ 
Sbjct: 173 EVSRPCDDILFEIAQLADQGVREVNLLGQNVNAYRGASYDGGICTFAELLRLVAAIDGID 232

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+RY TSHP + +D +I  + D   L+ ++HLPVQSGSDRIL  M R HTA EY+ II R
Sbjct: 233 RIRYITSHPIEFTDDIIDVYRDTPELVSFVHLPVQSGSDRILTMMKRAHTALEYKSIIRR 292

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R  RPDI ISSDFI+GFPGET  DF  TM L+  + +  +FSF YS R GTP ++M++ 
Sbjct: 293 LRKARPDIQISSDFIIGFPGETQQDFEQTMQLIADVNFDMSFSFIYSARPGTPAADMVDN 352

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVL 440
           V E  K +RL  LQ+++ +Q + ++    G++  +L+E   ++   +L GR+   + V  
Sbjct: 353 VSEEEKKQRLHILQERITQQAMQYSRRMKGKVQRILVEGTSRKNVMELSGRTENNRVVNF 412

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 IG  + V I DV  ++L G L+
Sbjct: 413 EGAPSMIGKFVDVEIVDVYPNSLRGVLL 440


>gi|119897069|ref|YP_932282.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Azoarcus sp.
           BH72]
 gi|229890447|sp|A1K3J0|MIAB_AZOSB RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|119669482|emb|CAL93395.1| Conserved Hypothetical protein [Azoarcus sp. BH72]
          Length = 449

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 196/454 (43%), Positives = 299/454 (65%), Gaps = 18/454 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ +++++GCQMN YDS +M D+  + +G  + ++ ++AD+I+ NTC +REKA EKV+  
Sbjct: 2   KKLYIRTFGCQMNEYDSEKMADVLGAGEGIAKTDNPEEADVILFNTCSVREKAQEKVFHD 61

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE-R 142
           LGR+++LK  +     DL++ V GCVA  EG+ I+ R+P V+VV GPQT +RLP L+  R
Sbjct: 62  LGRVKHLKQLK----PDLIIGVGGCVASQEGDAIVARAPYVDVVFGPQTLHRLPALIAAR 117

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            + G+  VD  +   +KF+ +        R  G +AF++I EGC K+CTFCVVPYTRG E
Sbjct: 118 KQSGRSQVDISFPEIEKFDAMPPA-----RVEGASAFVSIMEGCSKYCTFCVVPYTRGEE 172

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL--DGEKCTFSDLLYSLSEIKGL 260
           ISR L  V+ E   L + GV E+TLLGQNVNAWRG+ +   GE+  F+ LL  ++EI G+
Sbjct: 173 ISRPLEDVLAEIAGLAEQGVKEVTLLGQNVNAWRGEIVRDAGEEGDFAFLLECVAEIPGI 232

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+RYTTSHPR+M+  L  A+  +  L+  LHLPVQSGSDRIL +M R ++  E++ I+ 
Sbjct: 233 ERIRYTTSHPREMTQRLFDAYVKIPKLVSQLHLPVQSGSDRILAAMKRGYSVLEFKSIVR 292

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R+ RPD+++SSDFIVGFPGET++DF  TM L+D++G+  +FSF YS R GTP +++ +
Sbjct: 293 KLRAARPDLSLSSDFIVGFPGETEEDFEKTMKLIDEVGFDGSFSFVYSARPGTPAADLED 352

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLVGRSPWLQSVV 439
            V +  K   L  LQK++ EQ  + + + VG    +L+E   ++   +L+GR+   + V 
Sbjct: 353 PVPQETKLAWLARLQKRIDEQAQAVSQSMVGSAQRILVEGVSRKSAEELMGRTDNNRVVN 412

Query: 440 LNSKNHN----IGDIIKVRITDVKISTLYGELVV 469
             + + +    +G  I+VRIT     +L GE++ 
Sbjct: 413 FPAPSPHRDRLVGQFIEVRITSALPHSLRGEILT 446


>gi|229890677|sp|A6T6B5|MIAB_KLEP7 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
          Length = 474

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 195/448 (43%), Positives = 290/448 (64%), Gaps = 14/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS +M D+   + GY+     ++AD+++LNTC IREKA EKV+  
Sbjct: 3   KKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTEVAEEADVLLLNTCSIREKAQEKVFHQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK    ++  DL++ V GCVA  EG+ I +R+  V+++ GPQT +RLPE++   
Sbjct: 63  LGRWKLLK----EKNPDLIIGVGGCVASQEGDHIRQRAHYVDIIFGPQTLHRLPEMINSV 118

Query: 144 RFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           R G R  VVD  +   +KF+RL        R  G TAF++I EGC+K+CT+CVVPYTRG 
Sbjct: 119 R-GNRSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTYCVVPYTRGE 172

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E+SR    ++ E  +L   GV E+ LLGQNVNAWRG+  DG   +F+DLL  ++ I G+ 
Sbjct: 173 EVSRPCDDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTTGSFADLLRLVAAIDGID 232

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHP + +D +I  + D   L+ +LHLPVQSGSDR+L  M R HTA EY+ II +
Sbjct: 233 RIRFTTSHPIEFTDDIIDVYRDTPELVSFLHLPVQSGSDRVLNLMGRTHTALEYKAIIRK 292

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R  RPDI ISSDFIVGFPGET +DF  TM L+  + +  ++SF +S R GTP ++M++ 
Sbjct: 293 LREARPDIQISSDFIVGFPGETTEDFEKTMKLIADVNFDMSYSFIFSARPGTPAADMVDD 352

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVL 440
           V E  K +RL  LQ+++ +Q ++++   +G +  +L+E   ++   +L GR+   + V  
Sbjct: 353 VPEADKKQRLYILQERINQQAMAWSRRMLGTVQRILVEGTSRKNIMELSGRTENNRVVNF 412

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 +G  + V I DV  ++L G++V
Sbjct: 413 EGTPDLVGKFVDVEIVDVYTNSLRGKIV 440


>gi|330976853|gb|EGH76884.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Pseudomonas
           syringae pv. aptata str. DSM 50252]
          Length = 442

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 199/448 (44%), Positives = 282/448 (62%), Gaps = 13/448 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ +++++GCQMN YDS RM D+    Q  E     +DAD+I+LNTC IRE A ++VYS 
Sbjct: 3   KKLYIETHGCQMNEYDSSRMVDLLGEHQALEVTARAEDADVILLNTCSIREPAQDRVYSQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR R LK +      ++++ V GCVA  EG  I  R+P V+VV GPQT +RLPE+++ A
Sbjct: 63  LGRWRELKLA----NPEMVIAVGGCVASQEGAAIRDRAPYVDVVFGPQTLHRLPEMIDAA 118

Query: 144 RFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           R  +   VD  +   +KF+ L        R  G +A++++ EGC K+CTFCVVPYTRG E
Sbjct: 119 RVTRLPQVDVSFPEIEKFDHLP-----EPRVDGPSAYVSVMEGCSKYCTFCVVPYTRGEE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR    V+ E   L +NGV E+TLLGQNVN +RG   DG     +DL+  ++ + G+ R
Sbjct: 174 VSRPFDDVLSEVIHLAENGVREVTLLGQNVNGYRGTTHDGRVADLADLIRVVAAVDGIDR 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +RYTTSHP + SD LI+AH ++  L+ +LHLPVQSGSDRIL +M R HT  EY+  + ++
Sbjct: 234 IRYTTSHPLEFSDSLIQAHAEVPELVKHLHLPVQSGSDRILAAMKRNHTTLEYKSRLRKL 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+  P I+ISSDFIVGFPGET+ DF  TM L++ +G+  +FSF YSPR GTP +++ +  
Sbjct: 294 RAAVPGISISSDFIVGFPGETEKDFDNTMKLIEDVGFDFSFSFVYSPRPGTPAADLKDDT 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLN 441
            E +K ERL  LQ +L +Q    +   VG I  +L+  +  K+ G+L GR+   + V   
Sbjct: 354 PEALKKERLAALQHRLNQQGFEISRQMVGSIQRILVTDYSKKDPGELQGRTENNRIVNFR 413

Query: 442 SKNHN-IGDIIKVRITDVKISTLYGELV 468
             N   IG    V I D +  +L G L+
Sbjct: 414 CDNPKLIGQFADVHIDDAQPHSLRGSLL 441


>gi|238893721|ref|YP_002918455.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Klebsiella
           pneumoniae NTUH-K2044]
 gi|238546037|dbj|BAH62388.1| putative tRNA-thiotransferase and tRNA-methylthiotransferase
           bifunctional enzyme [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
          Length = 536

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 195/448 (43%), Positives = 290/448 (64%), Gaps = 14/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS +M D+   + GY+     ++AD+++LNTC IREKA EKV+  
Sbjct: 65  KKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTEVAEEADVLLLNTCSIREKAQEKVFHQ 124

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK    ++  DL++ V GCVA  EG+ I +R+  V+++ GPQT +RLPE++   
Sbjct: 125 LGRWKLLK----EKNPDLIIGVGGCVASQEGDHIRQRAHYVDIIFGPQTLHRLPEMINSV 180

Query: 144 RFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           R G R  VVD  +   +KF+RL        R  G TAF++I EGC+K+CT+CVVPYTRG 
Sbjct: 181 R-GNRSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTYCVVPYTRGE 234

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E+SR    ++ E  +L   GV E+ LLGQNVNAWRG+  DG   +F+DLL  ++ I G+ 
Sbjct: 235 EVSRPCDDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTTGSFADLLRLVAAIDGID 294

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHP + +D +I  + D   L+ +LHLPVQSGSDR+L  M R HTA EY+ II +
Sbjct: 295 RIRFTTSHPIEFTDDIIDVYRDTPELVSFLHLPVQSGSDRVLNLMGRTHTALEYKAIIRK 354

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R  RPDI ISSDFIVGFPGET +DF  TM L+  + +  ++SF +S R GTP ++M++ 
Sbjct: 355 LREARPDIQISSDFIVGFPGETTEDFEKTMKLIADVNFDMSYSFIFSARPGTPAADMVDD 414

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVL 440
           V E  K +RL  LQ+++ +Q ++++   +G +  +L+E   ++   +L GR+   + V  
Sbjct: 415 VPEADKKQRLYILQERINQQAMAWSRRMLGTVQRILVEGTSRKNIMELSGRTENNRVVNF 474

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 +G  + V I DV  ++L G++V
Sbjct: 475 EGTPDLVGKFVDVEIVDVYTNSLRGKIV 502


>gi|28871919|ref|NP_794538.1| tRNA-i(6)A37 modification enzyme MiaB [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|81729456|sp|Q87VY1|MIAB_PSESM RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|28855172|gb|AAO58233.1| tRNA-i(6)A37 modification enzyme MiaB [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|330873559|gb|EGH07708.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Pseudomonas
           syringae pv. morsprunorum str. M302280PT]
          Length = 442

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 199/448 (44%), Positives = 283/448 (63%), Gaps = 13/448 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ +++++GCQMN YDS RM D+    Q  E     +DAD+I+LNTC IRE+A ++VYS 
Sbjct: 3   KKLYIETHGCQMNEYDSSRMVDLLGEHQALEVTARAEDADVILLNTCSIRERAQDRVYSQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR R LK +      ++++ V GCVA  EG  I  R+P V+VV GPQT +RLPE+++ A
Sbjct: 63  LGRWRELKLA----NPEMVIAVGGCVASQEGAAIRDRAPYVDVVFGPQTLHRLPEMIDAA 118

Query: 144 RFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           R  +   VD  +   +KF+ L        R  G +A++++ EGC K+CTFCVVPYTRG E
Sbjct: 119 RITRLPQVDVSFPEIEKFDHLP-----EPRVDGPSAYVSVMEGCSKYCTFCVVPYTRGEE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR    V+ E   L ++GV E+TLLGQNVN +RG   DG     +DL+ +++ + G+ R
Sbjct: 174 VSRPFDDVLTEVTHLAEHGVREVTLLGQNVNGYRGTTHDGRVADLADLIRAVAVVDGIDR 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +RYTTSHP + SD LI+AH D+  L+ +LHLPVQSGSDRIL +M R HT  EY+  + ++
Sbjct: 234 IRYTTSHPLEFSDSLIQAHADVPELVKHLHLPVQSGSDRILAAMKRNHTTLEYKSRLRKL 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+  P I+ISSDFIVGFPGET+ DF  TM L++  G+  +FSF YSPR GTP +++ +  
Sbjct: 294 RAAVPGISISSDFIVGFPGETEKDFDNTMKLIEDAGFDFSFSFIYSPRPGTPAADLKDDT 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLN 441
            E +K ERL  LQ +L +Q    +   VG I  +L+  +  K+ G+L GR+   + V   
Sbjct: 354 PEALKKERLAALQHRLNQQGFEISRQMVGSIQRILVTDYSKKDPGELQGRTENNRIVNFR 413

Query: 442 SKNHN-IGDIIKVRITDVKISTLYGELV 468
             N   IG    V I D +  +L G L+
Sbjct: 414 CDNPRLIGQFADVHIDDAQPHSLRGSLL 441


>gi|156934828|ref|YP_001438744.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Cronobacter
           sakazakii ATCC BAA-894]
 gi|229890546|sp|A7MQS5|MIAB_ENTS8 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|156533082|gb|ABU77908.1| hypothetical protein ESA_02675 [Cronobacter sakazakii ATCC BAA-894]
          Length = 474

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 193/448 (43%), Positives = 292/448 (65%), Gaps = 14/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS +M D+   + G+   +  ++AD+++LNTC IREKA EKV+  
Sbjct: 3   KKLHIKTWGCQMNEYDSSKMADLLETTHGFTLTDVAEEADILLLNTCSIREKAQEKVFHQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK    ++  D+++ V GCVA  EG+ I  R+  V+++ GPQT +RLPE++ + 
Sbjct: 63  LGRWKTLK----EKNPDVIIGVGGCVASQEGDHIRDRARYVDIIFGPQTLHRLPEMINQV 118

Query: 144 RFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           + G R  VVD  +   +KF+RL        R  G TAF++I EGC+K+CT+CVVPYTRG 
Sbjct: 119 K-GTRSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTYCVVPYTRGE 172

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E+SR    +V E  +L   GV E+ LLGQNVNAWRG+  DG   TF+DLL  ++ I G+ 
Sbjct: 173 EVSRPSDDIVLEIAQLAAQGVREVNLLGQNVNAWRGENYDGTTGTFADLLRLVAAIDGID 232

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHP + +D +I+ + D   L+ +LHLPVQSGSDR+L  M R HTA EY+ II +
Sbjct: 233 RIRFTTSHPIEFTDDIIEVYRDTPELVSFLHLPVQSGSDRVLNMMGRTHTALEYKAIIRK 292

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R+ RPDI ISSDFIVGFPGET  DF  TM L+ ++ +  ++SF +S R GTP ++M++ 
Sbjct: 293 LRAARPDIQISSDFIVGFPGETQQDFEQTMKLIAEVNFDMSYSFIFSARPGTPAADMVDD 352

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVL 440
           V E  K +RL  LQ+++ +Q ++++   +G    +L+E   ++   +L GR+   + V  
Sbjct: 353 VPEEEKKQRLYILQERINQQAMAWSRRMLGTTQRILVEGTSRKSIMELSGRTENNRVVNF 412

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 +G  + V IT+V  ++L G+++
Sbjct: 413 EGSPDMVGKFVDVEITEVFPNSLRGKVI 440


>gi|33595815|ref|NP_883458.1| hypothetical protein BPP1141 [Bordetella parapertussis 12822]
 gi|81429531|sp|Q7WB66|MIAB_BORPA RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|33565894|emb|CAE36442.1| conserved hypothetical protein [Bordetella parapertussis]
          Length = 475

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 195/447 (43%), Positives = 292/447 (65%), Gaps = 13/447 (2%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + +++++GCQMN YDS +M D+  + QG E  ++ +DAD+I+ NTC +REKA EKV+S L
Sbjct: 28  KLYIRTFGCQMNEYDSDKMADVLRADQGLELTDNPEDADVILFNTCSVREKAQEKVFSDL 87

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR+++LK    K+  +L++ V GCVA  EGE I++R+P V+VV GPQT +RLP+L++R R
Sbjct: 88  GRVQHLK----KQNPNLVIGVGGCVASQEGEAIVKRAPYVDVVFGPQTLHRLPDLIKRRR 143

Query: 145 F-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             G   VD  +   +KF+ L        R  G TAF++I EGC K+C+FCVVPYTRG E+
Sbjct: 144 AQGVSQVDISFPEIEKFDALPP-----PRVDGATAFVSIMEGCSKYCSFCVVPYTRGEEV 198

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-GLDGEKCTFSDLLYSLSEIKGLVR 262
           SR    V+ E   L D GV E+TLLGQNVNA+RG  G  GE   F+ LL  + EI G+ R
Sbjct: 199 SRPFDDVLLEIADLADQGVKEVTLLGQNVNAYRGAMGDSGEIADFAMLLEYVHEIPGIER 258

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +RYTTSHP++M+  ++ A+  L  L+ +LHLPVQ+GSDR+L +M R +TA E++ ++ R+
Sbjct: 259 IRYTTSHPKEMTQRMVDAYARLPKLVSFLHLPVQAGSDRVLAAMKRGYTALEFKSVVRRL 318

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+ RP + +SSDFIVGFPGET++DF+ TM L++ +G+  +FSF YS R GTP +++ +  
Sbjct: 319 RAARPSLTLSSDFIVGFPGETEEDFQKTMKLIEDVGFDTSFSFVYSRRPGTPAADLHDDT 378

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLN 441
            ++VK  RL  LQ  + +Q  +     +G    VL+E    ++  +L+GR+   + V   
Sbjct: 379 PQDVKLRRLQQLQALINQQAAAIAQGMIGTRQRVLVEGPSRRDPNELMGRTENNRIVNFP 438

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                IG ++ V +T    ++L G + 
Sbjct: 439 GVPRLIGHMVDVVVTHAHTNSLRGRVA 465


>gi|262041254|ref|ZP_06014465.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Klebsiella pneumoniae
           subsp. rhinoscleromatis ATCC 13884]
 gi|330005959|ref|ZP_08305443.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Klebsiella sp. MS 92-3]
 gi|259041370|gb|EEW42430.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Klebsiella pneumoniae
           subsp. rhinoscleromatis ATCC 13884]
 gi|328536031|gb|EGF62437.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Klebsiella sp. MS 92-3]
          Length = 478

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 195/448 (43%), Positives = 290/448 (64%), Gaps = 14/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS +M D+   + GY+     ++AD+++LNTC IREKA EKV+  
Sbjct: 7   KKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTEVAEEADVLLLNTCSIREKAQEKVFHQ 66

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK    ++  DL++ V GCVA  EG+ I +R+  V+++ GPQT +RLPE++   
Sbjct: 67  LGRWKLLK----EKNPDLIIGVGGCVASQEGDHIRQRAHYVDIIFGPQTLHRLPEMINSV 122

Query: 144 RFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           R G R  VVD  +   +KF+RL        R  G TAF++I EGC+K+CT+CVVPYTRG 
Sbjct: 123 R-GNRSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTYCVVPYTRGE 176

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E+SR    ++ E  +L   GV E+ LLGQNVNAWRG+  DG   +F+DLL  ++ I G+ 
Sbjct: 177 EVSRPCDDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTTGSFADLLRLVAAIDGID 236

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHP + +D +I  + D   L+ +LHLPVQSGSDR+L  M R HTA EY+ II +
Sbjct: 237 RIRFTTSHPIEFTDDIIDVYRDTPELVSFLHLPVQSGSDRVLNLMGRTHTALEYKAIIRK 296

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R  RPDI ISSDFIVGFPGET +DF  TM L+  + +  ++SF +S R GTP ++M++ 
Sbjct: 297 LREARPDIQISSDFIVGFPGETTEDFEKTMKLIADVNFDMSYSFIFSARPGTPAADMVDD 356

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVL 440
           V E  K +RL  LQ+++ +Q ++++   +G +  +L+E   ++   +L GR+   + V  
Sbjct: 357 VPEADKKQRLYILQERINQQAMAWSRRMLGTVQRILVEGTSRKNIMELSGRTENNRVVNF 416

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 +G  + V I DV  ++L G++V
Sbjct: 417 EGTPDLVGKFVDVEIVDVYTNSLRGKIV 444


>gi|84624263|ref|YP_451635.1| hypothetical protein XOO_2606 [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|123752741|sp|Q2P266|MIAB_XANOM RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|84368203|dbj|BAE69361.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae MAFF
           311018]
          Length = 484

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 204/463 (44%), Positives = 296/463 (63%), Gaps = 19/463 (4%)

Query: 14  VSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHI 72
           V++     +V  + ++K++GCQMN YDS +M D+   S+G E  ++ ++AD++++NTC I
Sbjct: 25  VARPSAPAVVRGKLYIKTHGCQMNEYDSAKMADVLAASEGLELTDNPEEADVVLVNTCSI 84

Query: 73  REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT 132
           REKA EKV+S LGR + LK      G  +++ V GCVA  EGE I++R+P V++V GPQT
Sbjct: 85  REKAQEKVFSQLGRWKALKAG----GKPVIIGVGGCVASQEGEAIVKRAPYVDLVFGPQT 140

Query: 133 YYRLPELLERAR--FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190
            +RLPEL+ RAR   GK  VD  +   +KF+RL        R  G +AF++I EGC K+C
Sbjct: 141 LHRLPELI-RARRESGKSQVDISFPEIEKFDRLP-----EPRAEGPSAFVSIMEGCSKYC 194

Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT--FS 248
           +FCVVPYTRG E+SR    V+ E  +L   GV EI LLGQNVNA+RG           ++
Sbjct: 195 SFCVVPYTRGEEVSRPFEDVLVEVAQLAAQGVREINLLGQNVNAYRGAYGADAGDAAQYA 254

Query: 249 DL---LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
           DL   + ++++I+G+ R+R+TTSHP + SD L+ A+ D+  L  YLHLPVQ+GSDRIL +
Sbjct: 255 DLGLLIRTIAQIEGIGRIRFTTSHPLEFSDSLVDAYRDVPQLANYLHLPVQAGSDRILSA 314

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           M R +TA E++  I ++R+VRPDI+ISSDFIVGFPGET+ DF  TM L++ +G+ Q+FSF
Sbjct: 315 MKRGYTALEFKSRIRKLRAVRPDISISSDFIVGFPGETEADFEKTMKLIEDVGFDQSFSF 374

Query: 366 KYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KE 424
            YS R GTP S++ +   E VK  RL  LQ  +     S + + VG +  VL+E    ++
Sbjct: 375 VYSRRPGTPASDLQDDTPETVKQARLARLQAHISAHAASISQSMVGSVQRVLVEGPSRRD 434

Query: 425 KGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
             +L G+S  ++ V        IG  + V IT+   ++L G +
Sbjct: 435 PNELTGKSENMRPVNFPGNPRLIGQFVDVLITEAMSNSLRGRI 477


>gi|46203304|ref|ZP_00208896.1| COG0621: 2-methylthioadenine synthetase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 322

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 181/320 (56%), Positives = 235/320 (73%), Gaps = 5/320 (1%)

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           +VDT++ VEDKF+ L        R RGVT FLT+QEGCDKFC FCVVPYTRG E+SRS++
Sbjct: 1   MVDTEFPVEDKFDHLPA-----RRNRGVTGFLTVQEGCDKFCAFCVVPYTRGAEVSRSVA 55

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
            VV+EAR+L++ GV EITL+GQNVNA+ G+G DG   T   L+ +LS + GL RLRYTTS
Sbjct: 56  AVVEEARRLVEGGVREITLIGQNVNAYHGEGPDGAPSTLGRLMDALSAVPGLARLRYTTS 115

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
           HP D +D LI+AH    ++MPYLHLPVQSG+DRIL++MNRRHT  +YR++I RIR  RPD
Sbjct: 116 HPNDFADDLIRAHATNPLVMPYLHLPVQSGADRILQAMNRRHTGDDYRRLIARIREARPD 175

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           IA+SSDFIVGFPGETD DF  TM LV + G+A AFSFKYSPR GTP +   + V E VK 
Sbjct: 176 IALSSDFIVGFPGETDADFADTMRLVSETGFAAAFSFKYSPRAGTPAAEREDAVPEAVKT 235

Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIG 448
           ERL  LQ  L  Q+ +FN+A VG + E+L+EK G+  G++ G++P LQ+V  ++    IG
Sbjct: 236 ERLAALQALLDAQRHAFNEAAVGTVTEILVEKTGRHPGQVAGKTPHLQAVQFDASPSTIG 295

Query: 449 DIIKVRITDVKISTLYGELV 468
            ++ VRI     ++L+GE++
Sbjct: 296 TLVPVRIVRSGSNSLFGEVL 315


>gi|330813325|ref|YP_004357564.1| tRNA-i(6)A37 methylthiotransferase [Candidatus Pelagibacter sp.
           IMCC9063]
 gi|327486420|gb|AEA80825.1| tRNA-i(6)A37 methylthiotransferase [Candidatus Pelagibacter sp.
           IMCC9063]
          Length = 437

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 197/444 (44%), Positives = 282/444 (63%), Gaps = 13/444 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + F +K++GCQMN YDS R+ D+  +  Y+R+  ++ AD  + NTCHIREKA +KVYS +
Sbjct: 3   KNFVIKTFGCQMNEYDSNRIADLLSTIDYKRIEEVEKADCFIFNTCHIREKATQKVYSDI 62

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           G+I+ +   R K+   L V+ AGCVAQAE   +  +S  V++VVGPQ Y++LPEL++  +
Sbjct: 63  GKIKKI--LRGKQSKPLFVL-AGCVAQAESSMVFEKSDFVDIVVGPQAYHKLPELIKNYQ 119

Query: 145 FGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             K +  +T+  V DKF+ L   +   N    V++F+TIQEGCDKFC FCVVPYTRG E 
Sbjct: 120 KNKTKSFNTNLDVSDKFDSL---ENYKNISSKVSSFITIQEGCDKFCKFCVVPYTRGPEF 176

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR   Q+ +E + L+D G  EI LLGQNV+ ++ K ++      S L+  ++ IK L R+
Sbjct: 177 SRCPDQIYNEVQGLVDAGTREIILLGQNVSGYKNKDIN-----LSRLIDKVASIKKLERI 231

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+TTSHP D  + LI A    D LMP LHLPVQSGS++IL+SMNR+HT   Y ++ID+ R
Sbjct: 232 RFTTSHPNDFDEDLINAFKYQDKLMPQLHLPVQSGSNKILESMNRKHTREFYLKLIDKFR 291

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
            ++ DI  SSDFIVG+PGETD DF  T+DLVDK+ ++ ++SF YS R GTP  +  +Q+ 
Sbjct: 292 DIKKDIEFSSDFIVGYPGETDKDFEDTLDLVDKVKFSNSYSFVYSQRPGTPAVD-FDQIP 350

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
           +   A RL  LQ KL + Q  FND+ V    +VL+E   K+  +  GR+ ++Q V +   
Sbjct: 351 KEESATRLEVLQNKLFDLQRKFNDSKVNSKTKVLVENITKKGNQFFGRNEYMQPVFIEGN 410

Query: 444 NHNIGDIIKVRITDVKISTLYGEL 467
               G I  + +       L+G +
Sbjct: 411 KCTPGQIEIIEVKSSNRHNLWGTI 434


>gi|312963219|ref|ZP_07777703.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Pseudomonas fluorescens
           WH6]
 gi|311282485|gb|EFQ61082.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Pseudomonas fluorescens
           WH6]
          Length = 442

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 198/448 (44%), Positives = 285/448 (63%), Gaps = 13/448 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ +++++GCQMN YDS RM D+    Q  E     +DAD+I+LNTC IRE+A ++VYS 
Sbjct: 3   KKLYIETHGCQMNEYDSSRMVDLLGEHQALEVTARAEDADVILLNTCSIRERAQDRVYSQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR R LK +      D+++ V GCVA  EG  I  R+P V+VV GPQT +RLPE+++ A
Sbjct: 63  LGRWRELKLA----NPDMVIAVGGCVASQEGAAIRDRAPYVDVVFGPQTLHRLPEMIDAA 118

Query: 144 RFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           R  K   VD  +   +KF+ L        R  G +A++++ EGC K+CTFCVVPYTRG E
Sbjct: 119 RATKLPQVDVSFPEIEKFDHLP-----EPRIDGPSAYVSVMEGCSKYCTFCVVPYTRGEE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR    V+ E   L +NGV E+TLLGQNVN +RG+  DG     ++L+  ++ + G+ R
Sbjct: 174 VSRPFDDVLSEIIHLAENGVREVTLLGQNVNGYRGQTHDGRLADLAELIRVVAAVDGIER 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +RYTTSHP + SD LI+AH ++  L+ +LHLPVQSGSDRIL +M R HTA EY+  + ++
Sbjct: 234 IRYTTSHPLEFSDSLIQAHAEVPELVKHLHLPVQSGSDRILSAMKRNHTALEYKSKLRKL 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+  P I ISSDFIVGFPGET+ DF+ TM L++ +G+  ++SF YS R GTP +++L++ 
Sbjct: 294 RAAVPGICISSDFIVGFPGETEKDFQQTMKLIEDVGFDFSYSFVYSQRPGTPAADLLDET 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLN 441
            E +K ERL  LQ +L +Q    +   VG +  +L+  +  K+ G+L GR+   + V   
Sbjct: 354 PEALKKERLNALQHRLNQQGFEISRQMVGSVQRILVTDYSKKDPGELQGRTENNRIVNFR 413

Query: 442 SKNHN-IGDIIKVRITDVKISTLYGELV 468
             N   IG    V I   +  +L G L+
Sbjct: 414 CDNPTLIGQFADVHIDAAQPHSLRGSLI 441


>gi|254448584|ref|ZP_05062043.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [gamma proteobacterium
           HTCC5015]
 gi|198261773|gb|EDY86059.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [gamma proteobacterium
           HTCC5015]
          Length = 446

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 199/436 (45%), Positives = 283/436 (64%), Gaps = 12/436 (2%)

Query: 36  MNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSR 94
           MN YDS +M D+   + GYE   S ++AD+I++NTC IREKA EKV+S LGR R +K   
Sbjct: 1   MNEYDSDKMLDVLHQADGYELTTSAEEADVILMNTCSIREKAQEKVFSQLGRYRQMK--- 57

Query: 95  IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK-RVVDTD 153
            ++  DL++ V GCVA  EGE +  R+P V++V GPQT +RLPE++   R  K  VVD  
Sbjct: 58  -EKNPDLVIGVGGCVASQEGEALRERAPFVDMVFGPQTLHRLPEMVSSVRIKKMPVVDIS 116

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           +   +KF+ L        R  G +AF++I EGC K+CTFCVVPYTRG E+SR L  V+ E
Sbjct: 117 FPEIEKFDHLPA-----PRVEGPSAFVSIMEGCSKYCTFCVVPYTRGEEVSRPLDDVIAE 171

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
             +L   GV EI LLGQNVNA+RG+  +GE C F+ LL+ ++ + G+ R+RYTTSHP + 
Sbjct: 172 IAQLAAAGVREINLLGQNVNAYRGETHEGEICDFATLLHYVAAVDGIDRIRYTTSHPVEF 231

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
           +D +I A+  +  L+ +LHLPVQSG+DRIL +M R H A EY+  I ++R  RP +++SS
Sbjct: 232 TDAIIDAYKTVPELVSHLHLPVQSGADRILAAMKRGHMALEYKSKIRKLRKARPGLSLSS 291

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLC 393
           DFI+GFPGE++ DF  TM L+ +IG+  +FSF YS R GTP SN+ + V   VK ERL  
Sbjct: 292 DFIIGFPGESETDFEQTMSLIREIGFDTSFSFIYSARPGTPASNLPDDVPMTVKKERLKI 351

Query: 394 LQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIK 452
           LQK++ +     +++ VG I  VL+++   K+  ++ GR+   + V      + IG  + 
Sbjct: 352 LQKEIADNARQISESRVGSIQRVLVDRVSKKDSNEVSGRTECNRVVNFAGSPNLIGLFVD 411

Query: 453 VRITDVKISTLYGELV 468
           VRIT+   ++L GE V
Sbjct: 412 VRITEAYPNSLRGEFV 427


>gi|107023628|ref|YP_621955.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Burkholderia
           cenocepacia AU 1054]
 gi|116690713|ref|YP_836336.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia cenocepacia
           HI2424]
 gi|170734056|ref|YP_001766003.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Burkholderia
           cenocepacia MC0-3]
 gi|254247273|ref|ZP_04940594.1| hypothetical protein BCPG_02060 [Burkholderia cenocepacia PC184]
 gi|123244709|sp|Q1BTS3|MIAB_BURCA RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|229890456|sp|B1JY57|MIAB_BURCC RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|229890457|sp|A0KAB6|MIAB_BURCH RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|105893817|gb|ABF76982.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia cenocepacia
           AU 1054]
 gi|116648802|gb|ABK09443.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia cenocepacia
           HI2424]
 gi|124872049|gb|EAY63765.1| hypothetical protein BCPG_02060 [Burkholderia cenocepacia PC184]
 gi|169817298|gb|ACA91881.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia cenocepacia
           MC0-3]
          Length = 457

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 200/454 (44%), Positives = 292/454 (64%), Gaps = 18/454 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ +VK++GCQMN YDS +M D+   ++G E+ ++ +DAD+I+ NTC +REKA EKV+S 
Sbjct: 3   KKVYVKTFGCQMNEYDSDKMVDVLNAAEGLEKTDTPEDADIILFNTCSVREKAQEKVFSD 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR+R LK +  K G  LL+ V GCVA  EG  I+ R+P V++V GPQT +RLP++++  
Sbjct: 63  LGRVRELKEA--KPG--LLIGVGGCVASQEGASIVSRAPYVDLVFGPQTLHRLPQMIDAR 118

Query: 144 RF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           R  G+  VD  +   +KF+ L        R  G +AF++I EGC K+C++CVVPYTRG E
Sbjct: 119 RASGRAQVDITFPEIEKFDHLPPA-----RVEGPSAFVSIMEGCSKYCSYCVVPYTRGDE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK--CTFSDLLYSLSEIKGL 260
           +SR L  V+ E   L D GV E+TLLGQNVNA+RG    G      F+ L+  +++I G+
Sbjct: 174 VSRPLDDVLTEVAGLADQGVREVTLLGQNVNAYRGALTAGSTDIADFATLIEYVADIPGI 233

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+RYTTSHP++ +  LI  +  +  L+ +LHLPVQ GSDRIL +M R +T  EY+ +I 
Sbjct: 234 ERIRYTTSHPKEFTQRLIDTYAKVPKLVSHLHLPVQHGSDRILMAMKRGYTVLEYKSVIR 293

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R++RPD+++S+D IVGFPGET+DDF   M LV ++GY  +FSF YSPR GTP +N+ +
Sbjct: 294 KLRAIRPDLSLSTDMIVGFPGETEDDFDKMMALVHEMGYDTSFSFIYSPRPGTPAANLAD 353

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSV- 438
                VK +RL  LQ  + E     + + VG++  +L+E    K+  +L GR+   + V 
Sbjct: 354 DTPREVKLKRLQHLQATIEENVARISQSMVGKVERILVEGPSRKDPNELAGRTENNRVVN 413

Query: 439 ---VLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
               L S    IG +I V+I      +L GELV+
Sbjct: 414 FPAPLASHPRLIGQMIDVKINHAYPHSLRGELVL 447


>gi|237730638|ref|ZP_04561119.1| MiaB protein [Citrobacter sp. 30_2]
 gi|226906177|gb|EEH92095.1| MiaB protein [Citrobacter sp. 30_2]
          Length = 490

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 193/449 (42%), Positives = 289/449 (64%), Gaps = 14/449 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS +M D+   + GY+  +  ++AD+++LNTC IREKA EKV+  
Sbjct: 17  KKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTDVAEEADVLLLNTCSIREKAQEKVFHQ 76

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK    K    L++ V GCVA  EG+ I +R+  V+++ GPQT +RLPE++ + 
Sbjct: 77  LGRWKLLKEKNPK----LIIGVGGCVASQEGDHIRQRAHYVDIIFGPQTLHRLPEMINKV 132

Query: 144 RFGKR---VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           R       VVD  +   +KF+RL        R  G +AF++I EGC+K+CT+CVVPYTRG
Sbjct: 133 RGSTTRSPVVDISFPEIEKFDRLP-----EPRAEGPSAFVSIMEGCNKYCTYCVVPYTRG 187

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR    ++ E  +L   GV E+ LLGQNVNAWRG+  DG   +F+DLL  ++ I G+
Sbjct: 188 EEVSRPADDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTIGSFADLLRLVAAIDGI 247

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+TTSHP + +D +++ + D   L+ +LHLPVQSGSDR+L  M R HTA EY+ II 
Sbjct: 248 DRIRFTTSHPIEFTDDIVEVYRDTPELVSFLHLPVQSGSDRVLNLMGRTHTALEYKAIIR 307

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R+ RPDI ISSDFIVGFPGET  DF  TM L+  + +  ++SF +S R GTP ++M++
Sbjct: 308 KLRAARPDIQISSDFIVGFPGETTQDFEQTMKLIADVNFDMSYSFIFSARPGTPAADMVD 367

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439
            V E  K +RL  LQ+++ +Q ++++   VG    +L+E   ++   +L GR+   + V 
Sbjct: 368 DVPEEEKKQRLYILQERINQQAMAWSRRMVGTTQRILVEGTSRKSIMELSGRTENNRVVN 427

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  +G  + V ITDV  ++L G++V
Sbjct: 428 FEGNPDMVGKFVDVEITDVWTNSLRGKVV 456


>gi|187927511|ref|YP_001897998.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Ralstonia
           pickettii 12J]
 gi|309779787|ref|ZP_07674542.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Ralstonia sp. 5_7_47FAA]
 gi|229890622|sp|B2UFP3|MIAB_RALPJ RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|187724401|gb|ACD25566.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Ralstonia pickettii 12J]
 gi|308921364|gb|EFP67006.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Ralstonia sp. 5_7_47FAA]
          Length = 456

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 205/458 (44%), Positives = 289/458 (63%), Gaps = 26/458 (5%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ F+K+YGCQMN YDS +M D+   ++G    ++ +DAD+I+ NTC +REKA EKV+S 
Sbjct: 2   KKVFIKTYGCQMNEYDSDKMSDVLNAAEGLVPTDTPEDADVILFNTCSVREKAQEKVFSE 61

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE-R 142
           LGR++ LK  +     DL+V V GCVA  EG  I+ R+P V+VV GPQT +RLP+L+  R
Sbjct: 62  LGRVKALKALK----PDLVVGVGGCVASQEGASIVARAPYVDVVFGPQTLHRLPDLIAAR 117

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            R G+  VD  +   +KF+ L        R  G +A+++I EGC K+C++CVVPYTRG E
Sbjct: 118 RRTGRSQVDVSFPEIEKFDHLPPA-----RVDGASAYVSIMEGCSKYCSYCVVPYTRGEE 172

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-GLDGEKCTFSDLLYSLSEIKGLV 261
           +SR    V+ E   L + GV E+TLLGQNVNA+ GK G   E+  F+ LL  ++EI G+ 
Sbjct: 173 VSRPFDDVLAEVAGLAEQGVREVTLLGQNVNAYIGKMGDTSERADFALLLEYVAEIPGIE 232

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+RYTTSHP++ S  LI+A+     L+ +LHLPVQ GSDRIL +M R +T  EY+  I +
Sbjct: 233 RIRYTTSHPKEFSSRLIEAYATNPKLVDHLHLPVQHGSDRILMAMKRGYTVLEYKSSIRK 292

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R++RP+I+I++DFIVGFPGETD DF  TMDL+ +IGY  +FSF YSPR GTP +N+ + 
Sbjct: 293 LRAIRPNISIATDFIVGFPGETDADFAKTMDLIHEIGYDTSFSFIYSPRPGTPAANLHDD 352

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRS-------- 432
             + VK ERL  LQ  + E     +   VG +  +L+E    K+  +L GR+        
Sbjct: 353 TPQAVKLERLKHLQATIEENVARISQGMVGSVQRILVEGPSRKDPTELHGRTENNRVVNF 412

Query: 433 --PWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
             P L  V    +   IG ++ VRI      +L GE+ 
Sbjct: 413 ALPDLPQV---RREQLIGQMLDVRIVHAFPHSLRGEVA 447


>gi|224827052|ref|ZP_03700149.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Lutiella nitroferrum
           2002]
 gi|224600718|gb|EEG06904.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Lutiella nitroferrum
           2002]
          Length = 444

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 202/450 (44%), Positives = 291/450 (64%), Gaps = 18/450 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ ++K++GCQMN YDS +M D+   ++G  + ++ ++AD+I+ NTC +REKA EKV+S 
Sbjct: 2   KKVYIKTFGCQMNEYDSDKMVDVLGDAEGMVKTDNPEEADVILFNTCSVREKAQEKVFSD 61

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGRIR LK++R     DL++ V GCVA  EG+ I++R+P V+VV GPQT +RLPEL+ RA
Sbjct: 62  LGRIRPLKDAR----PDLIIGVGGCVASQEGDTIVKRAPYVDVVFGPQTLHRLPELI-RA 116

Query: 144 R--FGKRVVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           +   G   VD  +   +KF+ +  + VDGG        AF++I EGC K+C+FCVVPYTR
Sbjct: 117 KQDSGAAQVDISFPEIEKFDHIPPAKVDGG-------AAFVSIMEGCSKYCSFCVVPYTR 169

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G E+SR    V+ E   L   GV EITLLGQNVNA+RG   DGE   F+ LL  + E+ G
Sbjct: 170 GEEVSRPFDDVLTEIAGLAAQGVKEITLLGQNVNAYRGLMADGEIADFALLLEYVHEVPG 229

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           + R+R+TTSHPR+ S  +I  +  L  L+ +LHLPVQSG DR+L +M R +TA EY+ II
Sbjct: 230 VERIRFTTSHPREFSQRIIDCYAKLPKLVSHLHLPVQSGCDRVLMAMKRGYTALEYKSII 289

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            ++R++RPD+ +SSDFIVGFPGET+DDF AT+ LV  + +  +F F YSPR GTP +N+ 
Sbjct: 290 RKLRAIRPDLCLSSDFIVGFPGETEDDFNATLKLVKDLEFDFSFVFIYSPRPGTPAANLP 349

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSV 438
           +      K  RL  L + +  +  + N + VG +  VL+E    K+   L  R+   + V
Sbjct: 350 DDTPHEEKVRRLEALNEVIEAKGFAINQSMVGTVQRVLVEAVSKKDPNMLAARTMNNRVV 409

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468
                   +  +I+VRIT+ +  +L GE+V
Sbjct: 410 NFIGNPRLLNQMIEVRITEARPHSLAGEIV 439


>gi|254251467|ref|ZP_04944785.1| 2-methylthioadenine synthetase [Burkholderia dolosa AUO158]
 gi|124894076|gb|EAY67956.1| 2-methylthioadenine synthetase [Burkholderia dolosa AUO158]
          Length = 457

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 200/454 (44%), Positives = 292/454 (64%), Gaps = 18/454 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ +VK++GCQMN YDS +M D+   ++G E+ ++ +DAD+I+ NTC +REKA EKV+S 
Sbjct: 3   KKVYVKTFGCQMNEYDSDKMVDVLNAAEGLEKTDTPEDADIILFNTCSVREKAQEKVFSD 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR+R LK ++     DLL+ V GCVA  EG  I+ R+P V++V GPQT +RLP++++  
Sbjct: 63  LGRVRELKEAK----PDLLIGVGGCVASQEGASIVSRAPYVDLVFGPQTLHRLPQMIDAR 118

Query: 144 RF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           R  G+  VD  +   +KF+ L        R  G TAF++I EGC K+C++CVVPYTRG E
Sbjct: 119 RTSGRAQVDITFPEIEKFDHLPPA-----RVEGPTAFVSIMEGCSKYCSYCVVPYTRGDE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG--EKCTFSDLLYSLSEIKGL 260
           +SR L  V+ E   L D GV E+TLLGQNVNA+RG    G  E   F+ L+  +++I G+
Sbjct: 174 VSRPLDDVLTEIAGLADQGVREVTLLGQNVNAYRGALTAGSSEIADFATLIEYVADIPGI 233

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+RYTTSHP++ +  LI  +  +  L+ +LHLPVQ GSDRIL +M R +T  EY+ +I 
Sbjct: 234 ERIRYTTSHPKEFTQRLIDTYAKVPKLVNHLHLPVQHGSDRILMAMKRGYTVLEYKSVIR 293

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R++RPD+++S+D IVGFPGETDDDF   M LV  + Y  +FSF YSPR GTP +N+ +
Sbjct: 294 KLRAIRPDLSLSTDLIVGFPGETDDDFDKMMALVHDMRYDTSFSFIYSPRPGTPAANLHD 353

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSV- 438
               +VK +RL  LQ  + E     + + VG++  +L+E    K+  +L GR+   + V 
Sbjct: 354 DTPRDVKLKRLQHLQATIEENVARISRSMVGKVERILVEGPSRKDPNELAGRTENNRVVN 413

Query: 439 ---VLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
               L S    IG +I V+I      +L GEL++
Sbjct: 414 FPAPLASHPRLIGQMIDVKINHAYPHSLRGELLL 447


>gi|83746116|ref|ZP_00943171.1| COG0621, tRNA 2-methylthioadenosine synthase [Ralstonia
           solanacearum UW551]
 gi|207727985|ref|YP_002256379.1| hypothetical protein RSMK04402 [Ralstonia solanacearum MolK2]
 gi|207742384|ref|YP_002258776.1| hypothetical protein RSIPO_00571 [Ralstonia solanacearum IPO1609]
 gi|83727299|gb|EAP74422.1| COG0621, tRNA 2-methylthioadenosine synthase [Ralstonia
           solanacearum UW551]
 gi|206591228|emb|CAQ56840.1| conserved hypothetical protein [Ralstonia solanacearum MolK2]
 gi|206593774|emb|CAQ60701.1| conserved hypothetical protein [Ralstonia solanacearum IPO1609]
          Length = 464

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 203/459 (44%), Positives = 288/459 (62%), Gaps = 24/459 (5%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ F+K++GCQMN YDS +M D+   ++G    ++ +DAD+I+ NTC +REKA EKV+S 
Sbjct: 2   KKVFIKTFGCQMNEYDSDKMADVLNAAEGLVPTDTPEDADVILFNTCSVREKAQEKVFSD 61

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE-R 142
           LGR++ LK        DL+V V GCVA  EG  I+ R+P V+VV GPQT +RLPEL++ R
Sbjct: 62  LGRVKALK----ALNPDLVVGVGGCVASQEGASIVARAPYVDVVFGPQTLHRLPELIDAR 117

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            R G+  VD  +   +KF+ L        R  G +AF++I EGC K+C++CVVPYTRG E
Sbjct: 118 RRTGRPQVDVSFPEIEKFDHLPPA-----RVEGPSAFVSIMEGCSKYCSYCVVPYTRGEE 172

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-----GLDGEKCTFSDLLYSLSEI 257
           +SR    V+ E   L + GV E+TLLGQNVNA+ GK         E+  F+ LL  ++EI
Sbjct: 173 VSRPFEDVLAEVAGLAEQGVREVTLLGQNVNAYVGKMGSKANDSSERADFALLLEYVAEI 232

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
            G+ R+RYTTSHP++ +  LI+A+     L+ +LHLPVQ GSDRIL +M R +T  EY+ 
Sbjct: 233 PGIERIRYTTSHPKEFTSRLIEAYATNRKLVDHLHLPVQHGSDRILMAMKRGYTVLEYKS 292

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
           II ++R++RPDI+I++DFIVGFPGETD DF  TMDLV +IGY  +FSF YSPR GTP +N
Sbjct: 293 IIRKLRTIRPDISIATDFIVGFPGETDADFAKTMDLVHEIGYDNSFSFIYSPRPGTPAAN 352

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSP--- 433
           + +     VK ERL  LQ  +       ++  VG +  +L+E    K+  +L GR+    
Sbjct: 353 LHDDTPHAVKLERLKHLQATIDANMARISEGMVGSVQRILVEGPSRKDPSELHGRTENNR 412

Query: 434 ----WLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
                L  +    ++  +G ++ VRI      +L GE+ 
Sbjct: 413 VVNFALPDLPPARRDQLVGQMLDVRIVHAYPHSLRGEVA 451


>gi|146310845|ref|YP_001175919.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Enterobacter sp. 638]
 gi|229890545|sp|A4W838|MIAB_ENT38 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|145317721|gb|ABP59868.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Enterobacter sp. 638]
          Length = 474

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 198/448 (44%), Positives = 287/448 (64%), Gaps = 14/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS +M D+   + GYE     ++AD+++LNTC IREKA EKV+  
Sbjct: 3   KKLHIKTWGCQMNEYDSSKMADLLNATHGYELTELAEEADVLLLNTCSIREKAQEKVFHL 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK    K+  DL++ V GCVA  EG+ I  RSP V++V GPQT +RLPE++   
Sbjct: 63  LGRWKLLK----KKNPDLIIGVGGCVASQEGKLIRTRSPYVDIVFGPQTLHRLPEMINSV 118

Query: 144 RFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           R G R  VVD  +   +KF+RL        R  G +AF++I EGC+K+CT+CVVPYTRG 
Sbjct: 119 R-GDRSPVVDVSFPEIEKFDRLP-----EPRADGPSAFVSIMEGCNKYCTYCVVPYTRGE 172

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E+SR    ++ E  +L   GV E+ LLGQNVNAWRG+  DG   TF++LL  ++ I G+ 
Sbjct: 173 EVSRPCDDILFEVAQLAAQGVREVNLLGQNVNAWRGENYDGSIGTFAELLRLVAAIDGID 232

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHP + +D +I  + D   L+ +LHLPVQ GSDR+L  M R HT  EY+ II +
Sbjct: 233 RVRFTTSHPIEFTDDIIDVYRDTPELVSFLHLPVQCGSDRVLNLMGRTHTVLEYKAIIRK 292

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R  RPDI ISSDFIVGFPGET DDF  TM L+ +I +  +FSF +S R GTP ++M++ 
Sbjct: 293 LREARPDIQISSDFIVGFPGETTDDFERTMKLIGEINFDVSFSFIFSARPGTPAADMVDD 352

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVL 440
           V E  K +RL  LQ+++ +Q  +++   +G    +L+E   ++   +L GR+   + V  
Sbjct: 353 VPEEEKKQRLYILQERINQQVTAWSRRMLGTTQRILVEGTSRKSVMQLSGRTENNRVVNF 412

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 IG  + + I +V  +++ G++V
Sbjct: 413 EGTPDMIGKFVDIEILEVLTNSMRGKVV 440


>gi|289671358|ref|ZP_06492433.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Xanthomonas
           campestris pv. musacearum NCPPB4381]
          Length = 484

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 202/455 (44%), Positives = 290/455 (63%), Gaps = 17/455 (3%)

Query: 21  CIVPQRFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEK 79
            +V  + ++K++GCQMN YDS +M D+   S+G E  ++ +DAD++++NTC IREKA EK
Sbjct: 32  AVVRGKLYIKTHGCQMNEYDSAKMADVLAASEGLELTDNPEDADVVLVNTCSIREKAQEK 91

Query: 80  VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL 139
           V+S LGR + LK      G  +++ V GCVA  EGE I++R+P V++V GPQT +RLPEL
Sbjct: 92  VFSQLGRWKALKAG----GKPVIIGVGGCVASQEGEAIVKRAPYVDLVFGPQTLHRLPEL 147

Query: 140 LE-RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
           +  R   GK  VD  +   +KF+RL        R  G +AF++I EGC K+C+FCVVPYT
Sbjct: 148 IRARRESGKSQVDISFPEIEKFDRLP-----EPRADGPSAFVSIMEGCSKYCSFCVVPYT 202

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT--FSDL---LYS 253
           RG E+SR    V+ E  +L   GV EI LLGQNVNA+RG           ++DL   + +
Sbjct: 203 RGEEVSRPFEDVLVEVAQLAAQGVREINLLGQNVNAYRGAYGADAGDAAQYADLGLLIRT 262

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
           +++I G+ R+R+TTSHP + SD L+ A+ D+  L  YLHLPVQ+GSDRIL +M R +TA 
Sbjct: 263 IAQIDGIGRIRFTTSHPLEFSDSLVDAYRDVPQLANYLHLPVQAGSDRILSAMKRGYTAL 322

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
           E++  I ++R+VRPDI+ISSDFIVGFPGET+ DF  TM L++ +G+ Q+FSF YS R GT
Sbjct: 323 EFKSKIRKLRAVRPDISISSDFIVGFPGETEADFEKTMKLIEDVGFDQSFSFVYSRRPGT 382

Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRS 432
           P S++ +   E VK  RL  LQ  +     S + + VG +  VL+E    ++  +L G+S
Sbjct: 383 PASDLQDDTPEAVKQARLARLQAHISAHAASISQSMVGSVQRVLVEGPSRRDPNELTGKS 442

Query: 433 PWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
             ++ V        IG  + V IT+   ++L G +
Sbjct: 443 ENMRPVNFPGNPRLIGQFVDVLITEAMSNSLRGRI 477


>gi|78048194|ref|YP_364369.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Xanthomonas
           campestris pv. vesicatoria str. 85-10]
 gi|123757453|sp|Q3BS94|MIAB_XANC5 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|78036624|emb|CAJ24315.1| 2-methylthioadenine synthetase [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
          Length = 484

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 201/455 (44%), Positives = 291/455 (63%), Gaps = 17/455 (3%)

Query: 21  CIVPQRFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEK 79
            +V  + ++K++GCQMN YDS +M D+   S+G E  ++ ++AD++++NTC IREKA EK
Sbjct: 32  AVVRGKLYIKTHGCQMNEYDSAKMADVLAASEGLELTDNPEEADVVLVNTCSIREKAQEK 91

Query: 80  VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL 139
           V+S LGR + LK      G  +++ V GCVA  EGE I++R+P V++V GPQT +RLPEL
Sbjct: 92  VFSQLGRWKALKAG----GKPVIIGVGGCVASQEGEAIVKRAPYVDLVFGPQTLHRLPEL 147

Query: 140 LE-RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
           +  R   GK  VD  +   +KF+RL        R  G +AF++I EGC K+C+FCVVPYT
Sbjct: 148 IRARRESGKSQVDISFPEIEKFDRLP-----EPRAEGPSAFVSIMEGCSKYCSFCVVPYT 202

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT--FSDL---LYS 253
           RG E+SR    V+ E  +L   GV EI LLGQNVNA+RG           ++DL   + +
Sbjct: 203 RGEEVSRPFEDVLVEVAQLAAQGVREINLLGQNVNAYRGAYGADAGDAAQYADLGLLIRT 262

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
           +++I+G+ R+R+TTSHP + SD L+ A+ D+  L  YLHLPVQ+GSDRIL +M R +TA 
Sbjct: 263 IAQIEGIGRIRFTTSHPLEFSDSLVDAYRDVPQLANYLHLPVQAGSDRILSAMKRGYTAL 322

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
           E++  I ++R+VRPDI+ISSDFIVGFPGET+ DF  TM L++ +G+ Q+FSF YS R GT
Sbjct: 323 EFKSKIRKLRAVRPDISISSDFIVGFPGETEADFEKTMKLIEDVGFDQSFSFVYSRRPGT 382

Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRS 432
           P S++ +   E VK  RL  LQ  +     S + + VG +  VL+E    ++  +L G+S
Sbjct: 383 PASDLQDDTPEAVKQARLARLQAHINAHAASISQSMVGSVQRVLVEGPSRRDPNELTGKS 442

Query: 433 PWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
             ++ V        IG  + V IT+   ++L G +
Sbjct: 443 ENMRPVNFPGNPRLIGQFVDVLITEAMSNSLRGRI 477


>gi|85713017|ref|ZP_01044055.1| 2-methylthioadenine synthetase [Idiomarina baltica OS145]
 gi|85693186|gb|EAQ31146.1| 2-methylthioadenine synthetase [Idiomarina baltica OS145]
          Length = 476

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 202/447 (45%), Positives = 294/447 (65%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ +VK++GCQMN YDS +M D+  S  GYE     + ADLI+LNTC IREKA EKV+  
Sbjct: 3   KKLYVKTWGCQMNEYDSTKMADLLNSTHGYELTEEAEQADLILLNTCSIREKAQEKVFHQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR ++LK +      DLL+ V GCVA  EG+ I  R+P V++V GPQT +RLPE++++ 
Sbjct: 63  LGRWKHLKQA----NPDLLIGVGGCVASQEGDAIRARAPFVDIVFGPQTLHRLPEMVKQV 118

Query: 144 RFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
               + ++D  +   +KF+RL        +  G +AF++I EGC K+C+FCVVPYTRG E
Sbjct: 119 GSDHQPMIDISFPEIEKFDRLP-----DPKAEGASAFVSIMEGCSKYCSFCVVPYTRGEE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR +  V+ E  +L + GV E+ LLGQNVNA+RG+  DG  C F++LL+ ++ I G+ R
Sbjct: 174 VSRPVDDVIYEIAQLAEQGVREVNLLGQNVNAYRGEHFDGSVCRFAELLHLVAAIDGIDR 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +RYTTSHP + +D +I+A+  +  L+ +LHLPVQSGSDR+L  M R HTA EY+  I  +
Sbjct: 234 IRYTTSHPVEFTDDIIEAYTTIPELVSHLHLPVQSGSDRVLTMMKRGHTALEYKSKIRAL 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           +  RPDIA+SSDFI+GFPGETD DF+ATMDL+  I +  +FSF YS R GTP +++ + V
Sbjct: 294 KKARPDIAMSSDFIIGFPGETDADFQATMDLIQAIDFDMSFSFIYSARPGTPAADIPDDV 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLVGRSPWLQSVVLN 441
            E  K +RL  LQ++L +Q ++     +     +L+    K+   +L GR+   + V   
Sbjct: 354 TEATKKQRLQLLQQRLNQQSMAHARRMLDTEQRILVTGPSKKNPMELTGRTENNRVVNFV 413

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
            + H IG  + V+IT+V  ++L GEL+
Sbjct: 414 GQPHMIGKFVDVKITEVLPNSLRGELI 440


>gi|33592184|ref|NP_879828.1| hypothetical protein BP1041 [Bordetella pertussis Tohama I]
 gi|81578782|sp|Q7VZ86|MIAB_BORPE RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|33571829|emb|CAE41341.1| conserved hypothetical protein [Bordetella pertussis Tohama I]
 gi|332381601|gb|AEE66448.1| hypothetical protein BPTD_1035 [Bordetella pertussis CS]
          Length = 447

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 195/446 (43%), Positives = 291/446 (65%), Gaps = 13/446 (2%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
            +++++GCQMN YDS +M D+  + QG E  ++ +DAD+I+ NTC +REKA EKV+S LG
Sbjct: 1   MYIRTFGCQMNEYDSDKMADVLRADQGLELTDNPEDADVILFNTCSVREKAQEKVFSDLG 60

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R+++LK    K+  +L++ V GCVA  EGE I++R+P V+VV GPQT +RLP+L++R R 
Sbjct: 61  RVQHLK----KQNPNLVIGVGGCVASQEGEAIVKRAPYVDVVFGPQTLHRLPDLIKRRRA 116

Query: 146 -GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G   VD  +   +KF+ L        R  G TAF++I EGC K+C+FCVVPYTRG E+S
Sbjct: 117 QGVSQVDISFPEIEKFDALPP-----PRVDGATAFVSIMEGCSKYCSFCVVPYTRGEEVS 171

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-GLDGEKCTFSDLLYSLSEIKGLVRL 263
           R    V+ E   L D GV E+TLLGQNVNA+RG  G  GE   F+ LL  + EI G+ R+
Sbjct: 172 RPFDDVLLEVADLADQGVKEVTLLGQNVNAYRGAMGDSGEIADFAMLLEYVHEIPGIERI 231

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           RYTTSHP++M+  ++ A+  L  L+ +LHLPVQ+GSDR+L +M R +TA E++ ++ R+R
Sbjct: 232 RYTTSHPKEMTQRMVDAYARLPKLVSFLHLPVQAGSDRVLAAMKRGYTALEFKSVVRRLR 291

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           + RP + +SSDFIVGFPGET++DF+ TM L++ +G+  +FSF YS R GTP +++ +   
Sbjct: 292 AARPSLTLSSDFIVGFPGETEEDFQKTMKLIEDVGFDTSFSFVYSRRPGTPAADLHDDTP 351

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLNS 442
           ++VK  RL  LQ  + +Q  +     +G    VL+E    ++  +L+GR+   + V    
Sbjct: 352 QDVKLRRLQQLQALINQQAAAIAQGMIGTRQRVLVEGPSRRDPNELMGRTENNRIVNFPG 411

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
               IG ++ V +T    ++L G + 
Sbjct: 412 VPRLIGHMVDVVVTHAHTNSLRGRVA 437


>gi|293607161|ref|ZP_06689503.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Achromobacter piechaudii
           ATCC 43553]
 gi|292814495|gb|EFF73634.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Achromobacter piechaudii
           ATCC 43553]
          Length = 484

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 195/445 (43%), Positives = 290/445 (65%), Gaps = 15/445 (3%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           P++ +++++GCQMN YDS +M D+    QG E  ++ ++AD+I+ NTC +REKA EKV+S
Sbjct: 35  PRKLYIRTFGCQMNEYDSDKMADVLRGDQGLELTDNPEEADVILFNTCSVREKAQEKVFS 94

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            LGR+++LK    K   +L++ V GCVA  EG  I++R+P V+VV GPQT +RLP+L+ R
Sbjct: 95  DLGRVQHLK----KTNPNLVIGVGGCVASQEGAAIVKRAPYVDVVFGPQTLHRLPDLIAR 150

Query: 143 ARF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
            R  G+  VD  +   +KF+ +        R  G TAF++I EGC K+C+FCVVPYTRG 
Sbjct: 151 RRAEGRSQVDISFPEIEKFDNMPP-----PRVEGATAFVSIMEGCSKYCSFCVVPYTRGE 205

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK--GLDGEKCTFSDLLYSLSEIKG 259
           E+SR    V+ E   L D GV E+TLLGQNVNA+RGK  G D E   F+ LL  + EI G
Sbjct: 206 EVSRPFEDVLVEVADLADQGVKEVTLLGQNVNAYRGKMEGTD-EIADFAMLLEYVHEIPG 264

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           + R+RYTTSHP++M+  ++ A+  L  L+ +LHLPVQ+GSDR+L  M R +T  E++ ++
Sbjct: 265 IERIRYTTSHPKEMTQRMVDAYARLPKLVSFLHLPVQAGSDRVLAGMKRGYTTLEFKSVV 324

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            R+R+ RPD+ +SSDFIVGFPGET++DF  TM L++ +G+  +FSF YS R GTP +++ 
Sbjct: 325 RRLRAARPDLTLSSDFIVGFPGETEEDFEKTMKLIEDVGFDTSFSFVYSRRPGTPAADLT 384

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSV 438
           +   ++VK  RL  LQ  + EQ  +     VG    +L+E    ++  +L+GR+   + V
Sbjct: 385 DDTPQDVKLRRLQRLQALINEQAATIARNMVGTRQRLLVEGPSRRDPNELMGRTENNRIV 444

Query: 439 VLNSKNHNIGDIIKVRITDVKISTL 463
              +    IG ++ V IT+   ++L
Sbjct: 445 NFAAPARLIGQMVDVIITEAHTNSL 469


>gi|325266776|ref|ZP_08133449.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Kingella denitrificans
           ATCC 33394]
 gi|324981778|gb|EGC17417.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Kingella denitrificans
           ATCC 33394]
          Length = 441

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 194/448 (43%), Positives = 286/448 (63%), Gaps = 13/448 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQ--GYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           ++ F++++GCQMN YDS +M  +   +  G E+VN  D AD+I+ NTC +REKA EKV+S
Sbjct: 2   KKVFIRTFGCQMNEYDSEKMLAVLAEEHGGIEQVNEPDGADIILFNTCSVREKAQEKVFS 61

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL-LE 141
            LGR+++LK    K+  ++++ VAGCVA  EGE I+ R+P V+VV GPQT +RLP++ ++
Sbjct: 62  DLGRVKHLK----KDNPNVIIGVAGCVASQEGEAIIERAPYVDVVFGPQTLHRLPKMIMD 117

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           +   G   VD  +   +KF+ L        R  G +AF++I EGC K+C+FCVVPYTRG 
Sbjct: 118 KETTGLSQVDISFPEIEKFDHLPPA-----RVEGGSAFISIMEGCSKYCSFCVVPYTRGE 172

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR L+ V+ E   L   GV EI LLGQNVNA+RG+  +GE C F+ LL  + EI G+ 
Sbjct: 173 EFSRPLNDVLTEIANLAQQGVKEINLLGQNVNAYRGEMENGEICDFATLLRIVHEIPGIE 232

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHPR+ SD +I+ + DL  L+ +LHLP+QSGSDR+L +M R +TA EY+ II +
Sbjct: 233 RMRFTTSHPREFSDAIIECYRDLPKLVSHLHLPIQSGSDRVLSAMKRGYTALEYKSIIRK 292

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R++RPD+ +SSDFIVGFPGET+ +F  T+ LV  I +  +F F YSPR GTP +N+ + 
Sbjct: 293 LRAIRPDLCLSSDFIVGFPGETEREFEQTLKLVKDIAFDLSFVFIYSPRPGTPAANLPDD 352

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSVVL 440
                K  RL  L + +  +    N   +G +   L+E    K+  +L  R+   + V  
Sbjct: 353 TPHEEKVRRLEALNEVIEAETARINQTMLGTVQRCLVEGVSKKDPDQLQARTANNRVVNF 412

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
           +     I  ++ + IT+ +  +L G+L 
Sbjct: 413 HGTADLINQMVDLEITEARTFSLSGKLA 440


>gi|303250593|ref|ZP_07336790.1| bifunctional enzyme involved in thiolation andmethylation of tRNA
           [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
 gi|303253077|ref|ZP_07339227.1| bifunctional enzyme involved in thiolation andmethylation of tRNA
           [Actinobacillus pleuropneumoniae serovar 2 str. 4226]
 gi|302648062|gb|EFL78268.1| bifunctional enzyme involved in thiolation andmethylation of tRNA
           [Actinobacillus pleuropneumoniae serovar 2 str. 4226]
 gi|302650581|gb|EFL80740.1| bifunctional enzyme involved in thiolation andmethylation of tRNA
           [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
          Length = 455

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 196/428 (45%), Positives = 282/428 (65%), Gaps = 12/428 (2%)

Query: 44  MEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLL 102
           M D+  S  G E  +  ++AD+++LNTC IREKA EKV+S LGR +N K    K+  DL+
Sbjct: 1   MADLLNSTHGLELTDKPEEADVLLLNTCSIREKAQEKVFSQLGRWKNWK----KDKPDLI 56

Query: 103 VVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR-VVDTDYSVEDKFE 161
           + V GCVA  EGE I  R+P V++V GPQT +RLPE++ + R G R +VD  +   +KF+
Sbjct: 57  IGVGGCVASQEGEHIRDRAPFVDIVFGPQTLHRLPEMINKIRGGDRAIVDISFPEIEKFD 116

Query: 162 RLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNG 221
           RL        R  G TAF++I EGC+K+C+FCVVPYTRG E+SR +  V+ E  +L + G
Sbjct: 117 RLP-----EPRAEGPTAFVSIMEGCNKYCSFCVVPYTRGEEVSRPVDDVLFEIAQLAEQG 171

Query: 222 VCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAH 281
           V E+ LLGQNVNA+RG+  DG  CTF++LL  ++ I G+ R+RYTTSHP + +D +I+ +
Sbjct: 172 VREVNLLGQNVNAYRGETFDGGICTFAELLRLVAAIDGIDRVRYTTSHPIEFTDDIIEVY 231

Query: 282 GDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPG 341
            D   L+ +LHLP+QSG+DR+L  M R HTA EY+ II ++R VRP+I ISSDFIVGFPG
Sbjct: 232 RDTPELVSFLHLPIQSGADRVLTMMKRNHTALEYKAIIRKLREVRPNIQISSDFIVGFPG 291

Query: 342 ETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQ 401
           ET +DF  TM +++++ +  +FSF YS R GTP +++ + + E  K  RL  LQ+++  Q
Sbjct: 292 ETAEDFEQTMKVIEQVNFDMSFSFIYSARPGTPAADLPDDISEEEKKARLARLQQRINHQ 351

Query: 402 QVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKI 460
            + F+ A +G    VL+E   K+   +L GR+   + V        IG  + ++ITDV  
Sbjct: 352 AMQFSRAMLGTEQRVLVEGPSKKDIMELTGRTENNRIVNFQGTPDMIGKFVDIKITDVYT 411

Query: 461 STLYGELV 468
           ++L GE+V
Sbjct: 412 NSLRGEVV 419


>gi|253687591|ref|YP_003016781.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Pectobacterium
           carotovorum subsp. carotovorum PC1]
 gi|251754169|gb|ACT12245.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Pectobacterium
           carotovorum subsp. carotovorum PC1]
          Length = 474

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 199/448 (44%), Positives = 286/448 (63%), Gaps = 14/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS +M D+  S  GYE     ++AD+++LNTC IREKA EKV+  
Sbjct: 3   KKLLIKTWGCQMNEYDSSKMADLLGSTHGYELTEIAEEADVLLLNTCSIREKAQEKVFHQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK+       +L++ V GCVA  EG  I  R+  V+V+ GPQT +RLPE++   
Sbjct: 63  LGRWKALKDL----NPNLIIGVGGCVASQEGAHIRERAHYVDVIFGPQTLHRLPEMINHV 118

Query: 144 RFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           + G R  +VD  +   +KF+RL        R  G TAF++I EGC+K+CTFCVVPYTRG 
Sbjct: 119 Q-GTRSPIVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTFCVVPYTRGE 172

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E+SR    V+ E  +L   GV E+ LLGQNVNA+RG+  DGE C+F++LL  ++ I G+ 
Sbjct: 173 EVSRPCDDVLFEIAQLAAQGVREVNLLGQNVNAYRGETYDGEICSFAELLRLVAAIDGID 232

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHP + +D +I  + D   L+ +LHLPVQSGSDR+L  M RRHTA EY+ II +
Sbjct: 233 RIRFTTSHPIEFTDDIISVYEDTPELVSFLHLPVQSGSDRVLTMMKRRHTALEYKAIIRK 292

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           + + RP I ISSDFIVGFPGET  DF  TM L+  + +  ++SF YS R GTP ++M++ 
Sbjct: 293 LHNARPGILISSDFIVGFPGETQADFEQTMKLIADVNFDMSYSFVYSARPGTPAADMVDD 352

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVL 440
           V E  K +RL  LQ+++ +Q + F+   +G +  +L+E   ++   +L GR+   + V  
Sbjct: 353 VPEEEKKQRLYLLQERITQQAMRFSRLMLGTVQRILVEGTSRKSVMELSGRTENNRVVNF 412

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 IG  + V I DV  ++L G +V
Sbjct: 413 EGTPDMIGKFVDVEIVDVYTNSLRGIVV 440


>gi|261365367|ref|ZP_05978250.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Neisseria mucosa ATCC
           25996]
 gi|298369521|ref|ZP_06980838.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Neisseria sp. oral taxon
           014 str. F0314]
 gi|288566157|gb|EFC87717.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Neisseria mucosa ATCC
           25996]
 gi|298282078|gb|EFI23566.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Neisseria sp. oral taxon
           014 str. F0314]
          Length = 442

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 196/448 (43%), Positives = 283/448 (63%), Gaps = 13/448 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQ--GYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           ++ F++++GCQMN YDS +M  +   +  G E+V   D+AD+I+ NTC +REKA EKV+S
Sbjct: 2   KKVFIRTFGCQMNEYDSEKMLAVLAEENGGIEQVTEADEADIILFNTCSVREKAQEKVFS 61

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-E 141
            LGR+R LK    ++  DL++ VAGCVA  EGE I++R+P V+VV GPQT +RLP+++ +
Sbjct: 62  DLGRVRPLK----EKNPDLIIGVAGCVASQEGENIIKRAPYVDVVFGPQTLHRLPKMIVD 117

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           +   G   VD  +   +KF+ L        R  G  AF++I EGC K+C+FCVVPYTRG 
Sbjct: 118 KETSGLSQVDISFPEIEKFDHLPPA-----RVEGGAAFVSIMEGCSKYCSFCVVPYTRGE 172

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR L+ V+ E   L   GV EI LLGQNVNA+RG+  DGE C F+ LL  + EI G+ 
Sbjct: 173 EFSRPLNDVLTEIANLAQQGVKEINLLGQNVNAYRGEMEDGEICDFATLLRIVHEIPGIE 232

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHPR+ +D +I+ + DL  L+ +LHLP+QSGSDR+L +M R +TA EY+ II +
Sbjct: 233 RMRFTTSHPREFTDSIIECYRDLPKLVSHLHLPIQSGSDRVLSAMKRGYTALEYKSIIRK 292

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R++RPD+ +SSDFIVGFPGET+ +F  T+ LV  I +  +F F YSPR GTP +N+ + 
Sbjct: 293 LRAIRPDLCLSSDFIVGFPGETEREFEQTLKLVKDIAFDLSFVFIYSPRPGTPAANLPDD 352

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSVVL 440
                K  RL  L + +  +    N   +G +   L+E    K+  +L  R+   + V  
Sbjct: 353 TPHAEKVRRLEALNEVIEAETARINQTMIGTVQRCLVEGISKKDPDQLQARTANNRVVNF 412

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 I  +I + IT+    +L G+ V
Sbjct: 413 TGTPDMINQMIDLEITEAYTFSLRGKPV 440


>gi|253999825|ref|YP_003051888.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Methylovorus sp. SIP3-4]
 gi|313201799|ref|YP_004040457.1| tRNA-i(6)a37 thiotransferase enzyme miab [Methylovorus sp. MP688]
 gi|253986504|gb|ACT51361.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Methylovorus sp. SIP3-4]
 gi|312441115|gb|ADQ85221.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Methylovorus sp. MP688]
          Length = 443

 Score =  377 bits (967), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 200/447 (44%), Positives = 280/447 (62%), Gaps = 12/447 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
            P++ F+K++GCQMN YDS RM DM   + G +  ++ +DAD+I+LNTC +REKA EKV+
Sbjct: 3   TPKKVFIKTFGCQMNEYDSSRMADMLNAADGMQPTDNPEDADVILLNTCSVREKAQEKVF 62

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL- 140
           S LGR   LK    ++  +L++ V GCVA  EG+ I+ R+P V+VV GPQT +RLPEL+ 
Sbjct: 63  SHLGRFIPLK----EKNPNLVIGVGGCVASQEGQHIVDRAPYVDVVFGPQTLHRLPELIA 118

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
            R   G   VD  +   +KF+ L        R  G  AFL+I EGC+K+C+FCVVPYTRG
Sbjct: 119 NRRSSGLSQVDISFPEIEKFDHLPP-----PRVEGAAAFLSIMEGCNKYCSFCVVPYTRG 173

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E SR    ++ EA +L + GV EITLLGQNVNA+R    DG     + L+  ++EI  +
Sbjct: 174 EEFSRPFEDILVEAIQLAEQGVKEITLLGQNVNAYRSTSADGTAADLAMLIDYIAEIPQI 233

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+TTSHP +MS+ LI     +  L+ +LHLPVQ+GSDR+L  M R +TA +Y+ II 
Sbjct: 234 ERIRFTTSHPNEMSEALIDCFARIPKLVSHLHLPVQAGSDRVLMGMKRNYTALQYKSIIR 293

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R  RPDI I+SDFIVGFPGE++ DF AT+ L+  +G+  ++SF YS R GTP S + +
Sbjct: 294 KLRRARPDICITSDFIVGFPGESEQDFAATLKLMQDVGFDFSYSFTYSARPGTPASYLPD 353

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSVV 439
              E  K ERL  LQ+    Q  + +++ VG +  VL+E    K+ G+L GR+   + V 
Sbjct: 354 DTSEETKLERLSRLQELNEAQGKAVSESMVGSVQRVLVESLSKKDTGELAGRTDNNRIVN 413

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGE 466
                  I   + V+IT     TL GE
Sbjct: 414 FPGDAKLINQFVHVKITQAMPHTLRGE 440


>gi|166711743|ref|ZP_02242950.1| hypothetical protein Xoryp_09860 [Xanthomonas oryzae pv. oryzicola
           BLS256]
          Length = 484

 Score =  377 bits (967), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 203/462 (43%), Positives = 293/462 (63%), Gaps = 17/462 (3%)

Query: 14  VSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHI 72
           V++     +V  + ++K++GCQMN YDS +M D+   S+G E  +  ++AD++++NTC I
Sbjct: 25  VARPCAPAVVRGKLYIKTHGCQMNEYDSAKMADVLAASEGLELTDDPEEADVVLVNTCSI 84

Query: 73  REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT 132
           REKA EKV+S LGR + LK      G  +++ V GCVA  EGE I++R+P V++V GPQT
Sbjct: 85  REKAQEKVFSQLGRWKALKAG----GRPVIIGVGGCVASQEGEAIVKRAPHVDLVFGPQT 140

Query: 133 YYRLPELLE-RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCT 191
            +RLPEL+  R   GK  VD  +   +KF+RL        R  G +AF++I EGC K+C+
Sbjct: 141 LHRLPELIRARRESGKSQVDISFPEIEKFDRLP-----EPRAEGPSAFVSIMEGCSKYCS 195

Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT--FSD 249
           FCVVPYTRG E+SR    V+ E  +L   GV EI LLGQNVNA+RG           ++D
Sbjct: 196 FCVVPYTRGEEVSRPFEDVLVEVAQLAAQGVREINLLGQNVNAYRGAYGADAGDAAQYAD 255

Query: 250 L---LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306
           L   + ++++I+G+ R+R+TTSHP + SD L+ A+ D+  L  YLHLPVQ+GSDRIL +M
Sbjct: 256 LGLLIRTIAQIEGIGRIRFTTSHPLEFSDSLVDAYRDVPQLANYLHLPVQAGSDRILSAM 315

Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
            R +TA E++  I ++R+VRPDI+ISSDFIVGFPGET+ DF  TM L++ +G+ Q+FSF 
Sbjct: 316 KRGYTALEFKSRIRKLRAVRPDISISSDFIVGFPGETEADFEKTMKLIEDVGFDQSFSFV 375

Query: 367 YSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEK 425
           YS R GTP S++ +   E VK  RL  LQ  +     S + + VG +  VL+E    ++ 
Sbjct: 376 YSRRPGTPASDLQDDTPETVKQARLARLQAHISAHAASISQSMVGSVQRVLVEGPSRRDP 435

Query: 426 GKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
            +L GRS  ++ V        IG  + V IT+   ++L G +
Sbjct: 436 NELTGRSENMRPVNFPGNPRLIGQFVDVLITEAMSNSLRGRI 477


>gi|227114980|ref|ZP_03828636.1| hypothetical protein PcarbP_18561 [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 474

 Score =  377 bits (967), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 199/448 (44%), Positives = 286/448 (63%), Gaps = 14/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS +M D+  S  GYE     ++AD+++LNTC IREKA EKV+  
Sbjct: 3   KKLHIKTWGCQMNEYDSSKMADLLGSTHGYELTEIAEEADVLLLNTCSIREKAQEKVFHQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK+       +L++ V GCVA  EG  I  R+  V+V+ GPQT +RLPE++   
Sbjct: 63  LGRWKTLKDL----NPNLIIGVGGCVASQEGAHIRERAHYVDVIFGPQTLHRLPEMINHV 118

Query: 144 RFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           + G R  +VD  +   +KF+RL        R  G TAF++I EGC+K+CTFCVVPYTRG 
Sbjct: 119 Q-GTRSPIVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTFCVVPYTRGE 172

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E+SR    V+ E  +L   GV E+ LLGQNVNA+RG+  DGE C+F++LL  ++ I G+ 
Sbjct: 173 EVSRPCDDVLFEIAQLAAQGVREVNLLGQNVNAYRGETYDGEICSFAELLRLVAAIDGID 232

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHP + +D +I  + D   L+ +LHLPVQSGSDR+L  M RRHTA EY+ II +
Sbjct: 233 RVRFTTSHPIEFTDDIISVYEDTPELVSFLHLPVQSGSDRVLTMMKRRHTALEYKAIIRK 292

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           + + RP I ISSDFIVGFPGET  DF  TM L+  + +  ++SF YS R GTP ++M++ 
Sbjct: 293 LHNARPGILISSDFIVGFPGETQADFEQTMKLITDVNFDMSYSFVYSARPGTPAADMVDD 352

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVL 440
           V E  K +RL  LQ+++ +Q + F+   +G +  +L+E   ++   +L GR+   + V  
Sbjct: 353 VPEEEKKQRLYLLQERITQQAMRFSRLMLGTVQRILVEGTSRKSVMELSGRTENNRVVNF 412

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 IG  + V I DV  ++L G +V
Sbjct: 413 EGTPDMIGKFVDVEIVDVYTNSLRGIVV 440


>gi|271499717|ref|YP_003332742.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Dickeya dadantii Ech586]
 gi|270343272|gb|ACZ76037.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Dickeya dadantii Ech586]
          Length = 476

 Score =  377 bits (967), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 198/448 (44%), Positives = 288/448 (64%), Gaps = 14/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS ++ D+  S  GY+  +  ++AD+++LNTC IREKA EKV+  
Sbjct: 5   KKLHIKTWGCQMNEYDSSKIADLLESTHGYQLTDVAEEADILLLNTCSIREKAQEKVFHQ 64

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK+       +L++ V GCVA  EGE I  R+  V+V+ GPQT +RLPE++   
Sbjct: 65  LGRWKTLKDV----NPNLIIGVGGCVASQEGEHIRDRAHYVDVIFGPQTLHRLPEMINHV 120

Query: 144 RFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           + G R  +VD  +   +KF+RL        R  G TAF++I EGC+K+CTFCVVPYTRG 
Sbjct: 121 Q-GTRSPIVDISFPEVEKFDRLP-----EPRADGPTAFVSIMEGCNKYCTFCVVPYTRGE 174

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E+SR +  V+ E  +L   GV E+ LLGQNVNA+RG   D + C+F++LL  ++ I G+ 
Sbjct: 175 EVSRPVDDVLFEIAQLAAQGVREVNLLGQNVNAYRGATHDDDICSFAELLRLVAAIDGID 234

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+ TSHP + +D +I  + D   L+ +LHLPVQSGSDRIL  M RRHTA EY+ II +
Sbjct: 235 RIRFITSHPIEFTDDIISVYEDTPELVSFLHLPVQSGSDRILTMMKRRHTALEYKAIIRK 294

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R  RP I ISSDFIVGFPGET +DF  TM L+  + +  +FSF YSPR GTP ++M++ 
Sbjct: 295 LRKARPAIQISSDFIVGFPGETQEDFEQTMQLIADVDFDMSFSFIYSPRPGTPAADMVDD 354

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVL 440
           V E  K +RL  LQ+++ +Q + ++   +G +  +L+E   ++   +L GR+   + V  
Sbjct: 355 VTEEEKKQRLYILQERINQQAMQYSRRMMGTVQRILVEGTSRKSVMELSGRTENNRVVNF 414

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 IG  + V I DV  ++L G +V
Sbjct: 415 EGTPDMIGKFVDVEIVDVYPNSLRGVVV 442


>gi|260597078|ref|YP_003209649.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Cronobacter
           turicensis z3032]
 gi|260216255|emb|CBA29180.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Cronobacter turicensis z3032]
          Length = 474

 Score =  377 bits (967), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 193/448 (43%), Positives = 291/448 (64%), Gaps = 14/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS +M D+   + G+   +  ++AD+++LNTC IREKA EKV+  
Sbjct: 3   KKLHIKTWGCQMNEYDSSKMADLLETTHGFTLTDVAEEADILLLNTCSIREKAQEKVFHQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK    ++  D+++ V GCVA  EG+ I  R+  V+++ GPQT +RLPE++ + 
Sbjct: 63  LGRWKTLK----EKNPDVIIGVGGCVASQEGDHIRDRARYVDIIFGPQTLHRLPEMINQV 118

Query: 144 RFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           + G R  VVD  +   +KF+RL        R  G TAF++I EGC+K+CT+CVVPYTRG 
Sbjct: 119 K-GTRSPVVDISFPEIEKFDRLP-----EPRADGPTAFVSIMEGCNKYCTYCVVPYTRGE 172

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E+SR    +V E  +L   GV E+ LLGQNVNAWRG+  DG   TF+DLL  ++ I G+ 
Sbjct: 173 EVSRPGDDIVLEIAQLAAQGVREVNLLGQNVNAWRGENYDGTTGTFADLLRLVAAIDGID 232

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHP + +D +I+ + D   L+ +LHLPVQSGSDR+L  M R HTA EY+ II +
Sbjct: 233 RIRFTTSHPIEFTDDIIEVYRDTPELVSFLHLPVQSGSDRVLNMMGRTHTALEYKAIIRK 292

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R+ RPDI ISSDFIVGFPGET  DF  TM L+  + +  ++SF +S R GTP ++M++ 
Sbjct: 293 LRAARPDIQISSDFIVGFPGETQQDFEQTMKLIADVNFDMSYSFIFSARPGTPAADMVDD 352

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVL 440
           V E  K +RL  LQ+++ +Q ++++   +G    +L+E   ++   +L GR+   + V  
Sbjct: 353 VPEEEKKQRLYILQERINQQAMAWSRRMLGTTQRILVEGTSRKSIMELSGRTENNRVVNF 412

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 +G  + V IT+V  ++L G+++
Sbjct: 413 EGAPEMVGKFVDVEITEVFPNSLRGKVI 440


>gi|319639318|ref|ZP_07994069.1| hypothetical protein HMPREF0604_01693 [Neisseria mucosa C102]
 gi|317399502|gb|EFV80172.1| hypothetical protein HMPREF0604_01693 [Neisseria mucosa C102]
          Length = 440

 Score =  377 bits (967), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 196/448 (43%), Positives = 284/448 (63%), Gaps = 13/448 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQ--GYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           ++ F++++GCQMN YDS +M  +   +  G E+V   DDAD+I+ NTC +REKA EK++S
Sbjct: 2   KKVFIRTFGCQMNEYDSEKMLSVLAEEHGGIEQVTQPDDADIILFNTCSVREKAQEKIFS 61

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-E 141
            LGR+R LK    ++  DL++ VAGCVA  EGE I++R+P V+VV GPQT +RLP+L+ +
Sbjct: 62  DLGRVRPLK----EKNPDLIIGVAGCVASQEGENIVKRAPYVDVVFGPQTLHRLPKLIVD 117

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           +   G   +D  +   +KF+ L        R  G +AF++I EGC K+C++CVVPYTRG 
Sbjct: 118 KETTGLSQIDISFPEIEKFDHLPPA-----RVEGGSAFISIMEGCSKYCSYCVVPYTRGE 172

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR L+ V+ E   L   GV EI LLGQNVNA+RG+  +GE C F+ LL  + EI G+ 
Sbjct: 173 EFSRPLNDVLTEIAGLAQQGVKEINLLGQNVNAYRGEMENGEICDFATLLRIVHEIPGIE 232

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           RLR+TTSHPR+ +D +I+ + DL  L+ +LHLP+QSGSDR+L +M R +TA EY+ II +
Sbjct: 233 RLRFTTSHPREFTDAIIECYRDLPKLVSHLHLPIQSGSDRVLSAMKRGYTALEYKSIIRK 292

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R++RPD+ +SSDFIVGFPGET+ +F  T+ LV  I +  +F F YSPR GTP +N+ + 
Sbjct: 293 LRAIRPDLCLSSDFIVGFPGETEREFEQTLKLVKDIAFDLSFVFIYSPRPGTPAANLHDD 352

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSVVL 440
                K  RL  L + +  +    N   VG +   L+E    K+  +L  R+   + V  
Sbjct: 353 TPHEEKVRRLEALNEVIEAETARINQTMVGTVQRCLVEGISKKDPDQLQARTANNRVVNF 412

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 I  +I + IT+    +L G+ V
Sbjct: 413 TGTPDMINQMIDLEITEAYTFSLKGKPV 440


>gi|241759310|ref|ZP_04757416.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Neisseria flavescens
           SK114]
 gi|241320446|gb|EER56743.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Neisseria flavescens
           SK114]
          Length = 440

 Score =  377 bits (967), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 196/448 (43%), Positives = 284/448 (63%), Gaps = 13/448 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQ--GYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           ++ F++++GCQMN YDS +M  +   +  G E+V   DDAD+I+ NTC +REKA EKV+S
Sbjct: 2   KKVFIRTFGCQMNEYDSEKMLSVLAEEHGGIEQVTQPDDADIILFNTCSVREKAQEKVFS 61

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-E 141
            LGR+R LK    ++  DL++ VAGCVA  EGE I++R+P V+VV GPQT +RLP+L+ +
Sbjct: 62  DLGRVRPLK----EKNPDLIIGVAGCVASQEGENIVKRAPYVDVVFGPQTLHRLPKLIVD 117

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           +   G   +D  +   +KF+ L        R  G +AF++I EGC K+C++CVVPYTRG 
Sbjct: 118 KETTGLSQIDISFPEIEKFDHLPPA-----RVEGGSAFISIMEGCSKYCSYCVVPYTRGE 172

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR L+ V+ E   L   GV EI LLGQNVNA+RG+  +GE C F+ LL  + EI G+ 
Sbjct: 173 EFSRPLNDVLTEIAGLAQQGVKEINLLGQNVNAYRGEMENGEICDFATLLRIVHEIPGIE 232

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           RLR+TTSHPR+ +D +I+ + DL  L+ +LHLP+QSGSDR+L +M R +TA EY+ II +
Sbjct: 233 RLRFTTSHPREFTDAIIECYRDLPKLVSHLHLPIQSGSDRVLSAMKRGYTALEYKSIIRK 292

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R++RPD+ +SSDFIVGFPGET+ +F  T+ LV  I +  +F F YSPR GTP +N+ + 
Sbjct: 293 LRAIRPDLCLSSDFIVGFPGETEREFEQTLKLVKDIAFDLSFVFIYSPRPGTPAANLHDD 352

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSVVL 440
                K  RL  L + +  +    N   +G +   L+E    K+  +L  R+   + V  
Sbjct: 353 TPHEEKVRRLEALNEVIEAETARINQTMIGTVQRCLVEGISKKDPDQLQARTANNRVVNF 412

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 I  +I + IT+    +L G+ V
Sbjct: 413 TGTPDMINQMIDLEITEAYTFSLKGKPV 440


>gi|257092865|ref|YP_003166506.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257045389|gb|ACV34577.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 455

 Score =  377 bits (967), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 202/459 (44%), Positives = 291/459 (63%), Gaps = 25/459 (5%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ F++++GCQMN YDS +M D+   S+   + +S DDAD+I+ NTC +REKA E+V+  
Sbjct: 3   RKLFIRTFGCQMNEYDSDKMADVLAGSEDIVKTDSPDDADIILFNTCSVREKAQERVFHD 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-ER 142
           LGR+R LK    +   DL++ V GCVA  EG  I+ R+P V+VV GPQT +RLP+L+ +R
Sbjct: 63  LGRVRLLK----RANPDLVIGVGGCVASQEGAAIVARAPYVDVVFGPQTLHRLPQLIADR 118

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            R GK  VD  +   +KF+ L        R  G +AF++I EGC KFC+FC+VPYTRG E
Sbjct: 119 RRLGKSQVDISFPEIEKFDHLPPA-----RVAGASAFVSIMEGCSKFCSFCIVPYTRGEE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG--------EKCTFSDLLYSL 254
           +SR    V+ E   L   GV E+TLLGQNVNA+RG  + G        E    + L+  +
Sbjct: 174 VSRPFDDVLTEVAGLAAQGVREVTLLGQNVNAYRG-AMSGVGQAPAGDEAADLALLIEYI 232

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
           +EI G+ R+RYTTSHPR++S  LI  +  +  L+ +LHLPVQSGSDR+L +M R +TA E
Sbjct: 233 AEIPGIERIRYTTSHPREVSQRLIDIYARVPKLVSHLHLPVQSGSDRVLAAMKRGYTAIE 292

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
           Y+ ++ ++R+ RPD+++SSDFIVGFPGET DDF  TM L+D +G+  +FSF YS R GTP
Sbjct: 293 YKSLVRKLRAARPDLSLSSDFIVGFPGETADDFEKTMKLIDDVGFDASFSFLYSSRPGTP 352

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSP 433
            + + +     +K ERLL LQ ++ E   + + + VG +  VL+E    K+ G+L GR+ 
Sbjct: 353 AAELADDTPSTLKLERLLRLQARIDELAQAVSVSMVGTVQRVLVEGLSKKDSGELAGRTD 412

Query: 434 WLQSVVLNSKNHN----IGDIIKVRITDVKISTLYGELV 468
             + V   + + +    +   + VRIT     +L GELV
Sbjct: 413 NNRVVNFAAGSDDCTRWLDRFVDVRITSAMPHSLRGELV 451


>gi|226943049|ref|YP_002798122.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Azotobacter
           vinelandii DJ]
 gi|226717976|gb|ACO77147.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Azotobacter vinelandii
           DJ]
          Length = 442

 Score =  377 bits (967), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 202/448 (45%), Positives = 288/448 (64%), Gaps = 13/448 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ F++++GCQMN YDS RM D+    Q  E   +  +AD+I+LNTC IREKA EKV+S 
Sbjct: 3   KKLFIETHGCQMNEYDSSRMADLLGEHQALELTENPAEADVILLNTCSIREKAQEKVFSQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR R LK    K    L++ V GCVA  EG  I  R+P V+VV GPQT +RLPE+++ A
Sbjct: 63  LGRWRELK----KRNPALVIGVGGCVASQEGAAIRERAPYVDVVFGPQTLHRLPEMIDAA 118

Query: 144 RFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           R  ++  VD  +   +KF+RL        R  G +AF+++ EGC K+C++CVVPYTRG E
Sbjct: 119 RSTRQPQVDVSFPEIEKFDRLP-----EPRVDGPSAFVSVMEGCSKYCSYCVVPYTRGEE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR    V+ E   L +NGV E+TLLGQNVN +R    DG    F++LL+ ++ + G+ R
Sbjct: 174 VSRPPEDVLAEVIHLAENGVREVTLLGQNVNGYRATTADGRPVDFAELLHLVAAVDGIDR 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LRYTTSHP + SD +I AH ++  L+ ++HLPVQSGSDRIL +M R HTA EY+  I ++
Sbjct: 234 LRYTTSHPLEFSDAIIAAHAEIPELVKFVHLPVQSGSDRILAAMKRNHTALEYKSRIRKL 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           ++  PDI+ISSDFIVGFPGET+ DF  TM L++++G+  +FSF +SPR GTP + + +  
Sbjct: 294 KAAVPDISISSDFIVGFPGETEQDFAQTMKLIEEVGFDFSFSFVFSPRPGTPAAELPDDT 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLN 441
            E +K +RL  LQ ++ +Q    +   VG I  +L+  +  K+ G L GR+   + V   
Sbjct: 354 PEELKKQRLQILQNRIYQQGFEISRRMVGSIQRILVSDYSKKDPGMLQGRTENNRIVNFT 413

Query: 442 SKNHN-IGDIIKVRITDVKISTLYGELV 468
           S +   IG  ++VRI D    +L G L+
Sbjct: 414 SNDPRLIGQFVRVRIDDALPHSLRGSLL 441


>gi|227327390|ref|ZP_03831414.1| hypothetical protein PcarcW_08718 [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 474

 Score =  377 bits (967), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 199/448 (44%), Positives = 286/448 (63%), Gaps = 14/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS +M D+  S  GYE     ++AD+++LNTC IREKA EKV+  
Sbjct: 3   KKLHIKTWGCQMNEYDSSKMADLLGSTHGYELTEIAEEADVLLLNTCSIREKAQEKVFHQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK+       +L++ V GCVA  EG  I  R+  V+V+ GPQT +RLPE++   
Sbjct: 63  LGRWKTLKDL----NPNLIIGVGGCVASQEGTHIRERAHYVDVIFGPQTLHRLPEMINHV 118

Query: 144 RFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           + G R  +VD  +   +KF+RL        R  G TAF++I EGC+K+CTFCVVPYTRG 
Sbjct: 119 Q-GTRSPIVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTFCVVPYTRGE 172

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E+SR    V+ E  +L   GV E+ LLGQNVNA+RG+  DGE C+F++LL  ++ I G+ 
Sbjct: 173 EVSRPCDDVLFEIAQLAAQGVREVNLLGQNVNAYRGETYDGEICSFAELLRLVAAIDGID 232

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHP + +D +I  + D   L+ +LHLPVQSGSDR+L  M RRHTA EY+ II +
Sbjct: 233 RVRFTTSHPIEFTDDIISVYEDTPELVSFLHLPVQSGSDRVLTMMKRRHTALEYKAIIRK 292

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           + + RP I ISSDFIVGFPGET  DF  TM L+  + +  ++SF YS R GTP ++M++ 
Sbjct: 293 LHNARPGILISSDFIVGFPGETQADFEQTMKLIADVNFDMSYSFVYSARPGTPAADMVDD 352

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVL 440
           V E  K +RL  LQ+++ +Q + F+   +G +  +L+E   ++   +L GR+   + V  
Sbjct: 353 VPEEEKKQRLYLLQERITQQAMRFSRLMLGTVQRILVEGTSRKSVMELSGRTENNRVVNF 412

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 IG  + V I DV  ++L G +V
Sbjct: 413 EGTPDMIGKFVDVEIVDVYTNSLRGIVV 440


>gi|332975197|gb|EGK12097.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Kingella kingae ATCC
           23330]
          Length = 440

 Score =  376 bits (966), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 196/448 (43%), Positives = 286/448 (63%), Gaps = 13/448 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQ--GYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           ++ F++++GCQMN YDS +M  +   +  G E+V   + AD+I+ NTC +REKA EKV+S
Sbjct: 2   KKVFIRTFGCQMNEYDSEKMLAVLAEEHGGIEQVAEPEGADIILFNTCSVREKAQEKVFS 61

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-E 141
            LGR+++LK    K+   L++ VAGCVA  EGE I+ R+P V+VV GPQT +RLP+++ +
Sbjct: 62  DLGRVKHLK----KDNPQLIIGVAGCVASQEGEAIIERAPYVDVVFGPQTLHRLPKMIVD 117

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           +   G   VD  +   +KF+ L        R  G +AF++I EGC K+C+FCVVPYTRG 
Sbjct: 118 KETTGLSQVDISFPEIEKFDHLPPA-----RVEGGSAFISIMEGCSKYCSFCVVPYTRGE 172

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR L+ V+ E   L   GV EI LLGQNVNA+RG+  +GE C F+ LL  + EI G+ 
Sbjct: 173 EFSRPLNDVLTEIANLAQQGVKEINLLGQNVNAYRGEMDNGEICDFATLLRIVHEIPGIE 232

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHPR+ SD +I+ + DL  L+ +LHLP+QSGSDR+L +M R +TA EY+ II +
Sbjct: 233 RMRFTTSHPREFSDAIIECYRDLPKLVSHLHLPIQSGSDRVLSAMKRGYTALEYKSIIRK 292

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R++RPD+ +SSDFIVGFPGET+ +F  T+ LV  I +  +F F YSPR GTP +N+ + 
Sbjct: 293 LRAIRPDLCLSSDFIVGFPGETEREFEQTLKLVKDIAFDLSFVFIYSPRPGTPAANLPDD 352

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSVVL 440
                K  RL  L + +  +    N + +G I   L+E    K+  +L  R+   + V  
Sbjct: 353 TPHEEKVRRLEALNEVIEAETAQINQSMLGTIQRCLVEGVSKKDPDQLQARTANNRVVNF 412

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 I  ++++ IT+ +  +L GELV
Sbjct: 413 YGTPDLINQMVELEITEARTFSLTGELV 440


>gi|120597879|ref|YP_962453.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Shewanella sp.
           W3-18-1]
 gi|229890657|sp|A1RGV4|MIAB_SHESW RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|120557972|gb|ABM23899.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Shewanella sp. W3-18-1]
 gi|319427326|gb|ADV55400.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Shewanella putrefaciens
           200]
          Length = 474

 Score =  376 bits (966), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 195/447 (43%), Positives = 286/447 (63%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS +M D+    QGY       +AD+++LNTC IREKA EKV+  
Sbjct: 3   KKLHIKTWGCQMNEYDSSKMADLLGEYQGYTLTEDASEADILLLNTCSIREKAQEKVFHQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK+    +  +L++ V GCVA  EG+ I  R+  V+++ GPQT +RLP+++E+ 
Sbjct: 63  LGRWKTLKD----KNPNLIIGVGGCVASQEGKAIKDRAQCVDIIFGPQTLHRLPDMIEQV 118

Query: 144 RFG-KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           R G K V+D  +   +KF+RL        R  G TAF++I EGC K+C+FCVVPYTRG E
Sbjct: 119 RRGDKAVIDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCSKYCSFCVVPYTRGEE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR L  ++ E  +L + GV E+ LLGQNVNA+RG   DG  C+F++LL  ++ I G+ R
Sbjct: 174 VSRPLDDIILEIAQLAEQGVREVNLLGQNVNAYRGATHDGSICSFAELLRFVAAIDGIDR 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP + +  +I  + D   L+ +LHLPVQSGSDRIL +M R H A EY+ II R+
Sbjct: 234 IRFTTSHPIEFTQDIIDVYEDTPELVSFLHLPVQSGSDRILTAMKRGHMAIEYKSIIRRL 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R  R  I ISSDFI+GFPGET +DF  TM L+++IG+  +FSF YS R GTP +++ + V
Sbjct: 294 RKAREGIQISSDFIIGFPGETKEDFADTMKLIEEIGFDHSFSFIYSARPGTPAADLPDNV 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLN 441
           D   K +RL  LQ ++ +Q + ++   +G +  +L+E    K   +L GR+   + V   
Sbjct: 354 DMEEKKQRLAILQDRITQQAMRYSRHMMGTVQRILVEGPSVKNPMELRGRTENNRVVNFE 413

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
               +IG  + V I DV  ++L G+ +
Sbjct: 414 GLPKHIGTFVDVEIVDVYTNSLRGKFI 440


>gi|146293949|ref|YP_001184373.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Shewanella
           putrefaciens CN-32]
 gi|229890654|sp|A4Y9E1|MIAB_SHEPC RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|145565639|gb|ABP76574.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Shewanella putrefaciens
           CN-32]
          Length = 474

 Score =  376 bits (966), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 195/447 (43%), Positives = 286/447 (63%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS +M D+    QGY       +AD+++LNTC IREKA EKV+  
Sbjct: 3   KKLHIKTWGCQMNEYDSSKMADLLGEYQGYTLTEDASEADILLLNTCSIREKAQEKVFHQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK+    +  +L++ V GCVA  EG+ I  R+  V+++ GPQT +RLP+++E+ 
Sbjct: 63  LGRWKTLKD----KNPNLIIGVGGCVASQEGKAIKDRAQCVDIIFGPQTLHRLPDMIEQV 118

Query: 144 RFG-KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           R G K V+D  +   +KF+RL        R  G TAF++I EGC K+C+FCVVPYTRG E
Sbjct: 119 RRGDKAVIDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCSKYCSFCVVPYTRGEE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR L  ++ E  +L + GV E+ LLGQNVNA+RG   DG  C+F++LL  ++ I G+ R
Sbjct: 174 VSRPLDDIILEIAQLAEQGVREVNLLGQNVNAYRGATHDGSICSFAELLRFVAAIDGIDR 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP + +  +I  + D   L+ +LHLPVQSGSDRIL +M R H A EY+ II R+
Sbjct: 234 IRFTTSHPIEFTQDIIDVYEDTPELVSFLHLPVQSGSDRILTAMKRGHMAIEYKSIIRRL 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R  R  I ISSDFI+GFPGET +DF  TM L+++IG+  +FSF YS R GTP +++ + V
Sbjct: 294 RKAREGIQISSDFIIGFPGETKEDFADTMKLIEEIGFDHSFSFIYSARPGTPAADLPDNV 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLN 441
           D   K +RL  LQ ++ +Q + ++   +G +  +L+E    K   +L GR+   + V   
Sbjct: 354 DMEEKKQRLAILQDRITQQAMRYSRHMMGTVQRILVEGPSVKNPMELRGRTENNRVVNFE 413

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
               +IG  + V I DV  ++L G+ +
Sbjct: 414 GLPKHIGTFVDVEIVDVYTNSLRGKFI 440


>gi|153001812|ref|YP_001367493.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Shewanella
           baltica OS185]
 gi|160876545|ref|YP_001555861.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Shewanella
           baltica OS195]
 gi|304410288|ref|ZP_07391907.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Shewanella baltica OS183]
 gi|307302001|ref|ZP_07581759.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Shewanella baltica BA175]
 gi|229890649|sp|A6WRJ1|MIAB_SHEB8 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|229890650|sp|A9KZZ3|MIAB_SHEB9 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|151366430|gb|ABS09430.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Shewanella baltica OS185]
 gi|160862067|gb|ABX50601.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Shewanella baltica OS195]
 gi|304351697|gb|EFM16096.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Shewanella baltica OS183]
 gi|306914039|gb|EFN44460.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Shewanella baltica BA175]
 gi|315268739|gb|ADT95592.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Shewanella baltica OS678]
          Length = 474

 Score =  376 bits (966), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 196/447 (43%), Positives = 284/447 (63%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS +M D+    QGY       +AD+++LNTC IREKA EKV+  
Sbjct: 3   KKLHIKTWGCQMNEYDSSKMADLLGEYQGYTLTEEASEADILLLNTCSIREKAQEKVFHQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK+    +  +L++ V GCVA  EG+ I  R+  V+++ GPQT +RLPE++E+ 
Sbjct: 63  LGRWKTLKD----KNPNLIIGVGGCVASQEGKAIKDRAQCVDIIFGPQTLHRLPEMIEQV 118

Query: 144 RFG-KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           R G K V+D  +   +KF+RL        R  G TAF++I EGC K+C+FCVVPYTRG E
Sbjct: 119 RRGDKAVIDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCSKYCSFCVVPYTRGEE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR    ++ E  +L + GV E+ LLGQNVNA+RG   DG  CTF++LL  ++ I G+ R
Sbjct: 174 VSRPSDDIILEIAQLAEQGVREVNLLGQNVNAYRGATHDGAICTFAELLRFVAAIDGIDR 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP + +  +I  + D   L+ +LHLPVQSGSDRIL +M R H A EY+ II R+
Sbjct: 234 IRFTTSHPIEFTQDIIDVYEDTPELVSFLHLPVQSGSDRILTAMKRGHMAIEYKSIIRRL 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R  R  I ISSDFI+GFPGET +DF  TM L++ IG+  +FSF YS R GTP +++ + V
Sbjct: 294 RKAREGIQISSDFIIGFPGETKEDFADTMKLIEDIGFDHSFSFIYSARPGTPAADLPDNV 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLN 441
           D   K +RL  LQ ++ +Q + ++   +G +  +L+E    K   +L GR+   + V   
Sbjct: 354 DMEEKKQRLAILQDRITQQAMRYSRHMMGTVQRILVEGPSVKNPMELRGRTENNRVVNFE 413

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
            +  +IG  + V I DV  ++L G  +
Sbjct: 414 GQPKHIGTFVDVEIVDVYTNSLRGVFI 440


>gi|77748655|ref|NP_642776.2| (dimethylallyl)adenosine tRNA methylthiotransferase [Xanthomonas
           axonopodis pv. citri str. 306]
 gi|229891228|sp|Q8PJR9|MIAB_XANAC RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
          Length = 484

 Score =  376 bits (966), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 202/451 (44%), Positives = 290/451 (64%), Gaps = 19/451 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + ++K++GCQMN YDS +M D+   S+G E  +  ++AD++++NTC IREKA EKV+S L
Sbjct: 37  KLYIKTHGCQMNEYDSAKMADVLAASEGLELTDDPEEADVVLVNTCSIREKAQEKVFSQL 96

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR + LK      G  +++ V GCVA  EGE I++R+P V++V GPQT +RLPEL+ RAR
Sbjct: 97  GRWKALKAG----GKPVIIGVGGCVASQEGEAIVKRAPYVDLVFGPQTLHRLPELI-RAR 151

Query: 145 --FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
              GK  VD  +   +KF+RL        R  G +AF++I EGC K+C+FCVVPYTRG E
Sbjct: 152 RESGKSQVDISFPEIEKFDRLP-----EPRAEGPSAFVSIMEGCSKYCSFCVVPYTRGEE 206

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT--FSDL---LYSLSEI 257
           +SR    V+ E  +L   GV EI LLGQNVNA+RG           ++DL   + ++++I
Sbjct: 207 VSRPFEDVLVEVAQLAAQGVREINLLGQNVNAYRGAYGADAGDAAQYADLGLLIRTIAQI 266

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
           +G+ R+R+TTSHP + SD L+ A+ D+  L  YLHLPVQ+GSDRIL +M R +TA E++ 
Sbjct: 267 EGIGRIRFTTSHPLEFSDSLVDAYRDVPQLANYLHLPVQAGSDRILSAMKRGYTALEFKS 326

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
            I ++R+VRPDI+ISSDFIVGFPGET+ DF  TM L++ +G+ Q+FSF YS R GTP S+
Sbjct: 327 KIRKLRAVRPDISISSDFIVGFPGETEADFEKTMKLIEDVGFDQSFSFVYSRRPGTPASD 386

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQ 436
           + +   E VK  RL  LQ  +     S + + VG +  VL+E    ++  +L G+S  ++
Sbjct: 387 LQDDTPEAVKQARLARLQAHINAHAASISQSMVGSVQRVLVEGPSRRDPNELTGKSENMR 446

Query: 437 SVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
            V        IG  + V IT+   ++L G +
Sbjct: 447 PVNFPGNPRLIGQFVDVLITEAMSNSLRGRI 477


>gi|325925030|ref|ZP_08186452.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Xanthomonas perforans
           91-118]
 gi|325544542|gb|EGD15903.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Xanthomonas perforans
           91-118]
          Length = 470

 Score =  376 bits (966), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 201/455 (44%), Positives = 290/455 (63%), Gaps = 17/455 (3%)

Query: 21  CIVPQRFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEK 79
            +V  + ++K++GCQMN YDS +M D+   S+G E  ++ ++AD++++NTC IREKA EK
Sbjct: 18  AVVRGKLYIKTHGCQMNEYDSAKMADVLAASEGLELTDNPEEADVVLVNTCSIREKAQEK 77

Query: 80  VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL 139
           V+S LGR + LK      G  +++ V GCVA  EGE I++R+P V++V GPQT +RLPEL
Sbjct: 78  VFSQLGRWKALKAG----GKPVIIGVGGCVASQEGEAIVKRAPYVDLVFGPQTLHRLPEL 133

Query: 140 LE-RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
           +  R   GK  VD  +   +KF+RL        R  G +AF++I EGC K+C+FCVVPYT
Sbjct: 134 IRARRESGKSQVDISFPEIEKFDRLP-----EPRAEGPSAFVSIMEGCSKYCSFCVVPYT 188

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT--FSDL---LYS 253
           RG E+SR    V+ E  +L   GV EI LLGQNVNA+RG           ++DL   + +
Sbjct: 189 RGEEVSRPFEDVLVEVAQLAAQGVREINLLGQNVNAYRGAYGADAGDAAQYADLGLLIRT 248

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
           +++I G+ R+R+TTSHP + SD L+ A+ D+  L  YLHLPVQ+GSDRIL +M R +TA 
Sbjct: 249 IAQIDGIGRIRFTTSHPLEFSDSLVDAYRDVPQLANYLHLPVQAGSDRILSAMKRGYTAL 308

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
           E++  I ++R+VRPDI+ISSDFIVGFPGET+ DF  TM L++ +G+ Q+FSF YS R GT
Sbjct: 309 EFKSKIRKLRAVRPDISISSDFIVGFPGETEADFEKTMKLIEDVGFDQSFSFVYSRRPGT 368

Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRS 432
           P S++ +   E VK  RL  LQ  +     S + + VG +  VL+E    ++  +L G+S
Sbjct: 369 PASDLQDDTPEAVKQARLARLQAHINAHAASISQSMVGSVQRVLVEGPSRRDPNELTGKS 428

Query: 433 PWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
             ++ V        IG  + V IT+   ++L G +
Sbjct: 429 ENMRPVNFPGNPRLIGQFVDVLITEAMSNSLRGRI 463


>gi|73540220|ref|YP_294740.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Ralstonia eutropha
           JMP134]
 gi|123746634|sp|Q475N7|MIAB_RALEJ RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|72117633|gb|AAZ59896.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Ralstonia eutropha
           JMP134]
          Length = 450

 Score =  376 bits (966), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 203/456 (44%), Positives = 289/456 (63%), Gaps = 20/456 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ FVK+YGCQMN YDS +M D+   SQG E  ++++DAD+I+ NTC +REKA EKV+S 
Sbjct: 2   KKVFVKTYGCQMNEYDSDKMVDVLNASQGLEPTDNVEDADVILFNTCSVREKAQEKVFSE 61

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-ER 142
           LGR++ LK  +     DL++ V GCVA  EG  I+ R+P V+VV GPQT +RLP+L+  R
Sbjct: 62  LGRMKALKAVK----PDLVIGVGGCVASQEGASIVSRAPYVDVVFGPQTLHRLPDLIARR 117

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            R G+  VD  +   +KF+ L        R  G +AF++I EGC K+C++CVVPYTRG E
Sbjct: 118 QRTGQSQVDISFPEIEKFDHLPPA-----RVEGPSAFVSIMEGCSKYCSYCVVPYTRGEE 172

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-GLDGEKCTFSDLLYSLSEIKGLV 261
           +SR    V+ E   L + GV E+TLLGQNVNA+RG  G   E   F+ L+  ++EI G+ 
Sbjct: 173 VSRPFEDVLAEVAGLAEQGVREVTLLGQNVNAYRGAMGGTSEIADFALLIEYVAEIPGIE 232

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+RYTTSHP++ +  L++ +G  D L+ +LHLPVQ  SDR+L +M R ++  EY+ II R
Sbjct: 233 RIRYTTSHPKEFTSRLVELYGRCDKLVNHLHLPVQHASDRVLMAMKRGYSVLEYKSIIRR 292

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R +RPD+++SSDFIVGFPGETD DF   M L++++GY  +FSF +SPR GTP +N+ + 
Sbjct: 293 LRMLRPDMSMSSDFIVGFPGETDADFDKLMALIEEVGYDTSFSFIFSPRPGTPAANLHDD 352

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSP------- 433
               VK  RL  LQ  + E     +   VG +  +L+E    K+  +L GR+        
Sbjct: 353 TPHEVKLRRLQHLQATIEENVQRISRNMVGSVQRILVEGPSRKDPTELHGRTENNRVVNF 412

Query: 434 WLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
            L  V    ++  IG ++ V IT     +L GE+VV
Sbjct: 413 ALPGVPQAQRDRMIGQMVDVSITQAFPHSLRGEIVV 448


>gi|325127523|gb|EGC50449.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Neisseria meningitidis
           N1568]
          Length = 442

 Score =  376 bits (966), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 198/448 (44%), Positives = 282/448 (62%), Gaps = 13/448 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQ--GYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           ++ F++++GCQMN YDS +M  +   +  G E+V   DDAD+I+ NTC +REKA EKV+S
Sbjct: 2   KKVFIRTFGCQMNEYDSDKMLAVLAEEHGGIEQVTQPDDADIILFNTCSVREKAQEKVFS 61

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-E 141
            LGR+R LK    ++   L++ VAGCVA  EGE I++R+P V+VV GPQT +RLP+++ +
Sbjct: 62  DLGRVRPLK----EKNPGLIIGVAGCVASQEGENIVKRAPYVDVVFGPQTLHRLPKMIVD 117

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           +   G   VD  +   +KF+ L        R  G  AF++I EGC K+C+FCVVPYTRG 
Sbjct: 118 KETSGLSQVDISFPEIEKFDHLPPA-----RVEGGAAFVSIMEGCSKYCSFCVVPYTRGE 172

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR L+ V+ E   L   GV EI LLGQNVNA+RG+  DGE C F+ LL  + EI G+ 
Sbjct: 173 EFSRPLNDVLTEIANLAQQGVKEINLLGQNVNAYRGEMDDGEICDFATLLRIVHEIPGIE 232

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           RLR+TTSHPR+ +D +I+ + DL  L+ +LHLP+QSGSDR+L +M R +TA EY+ II +
Sbjct: 233 RLRFTTSHPREFTDAIIECYRDLPKLVSHLHLPIQSGSDRVLSAMKRGYTALEYKSIIRK 292

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R++RPD+ +SSDFIVGFPGET+ +F  T+ LV  I +  +F F YSPR GTP +N+ + 
Sbjct: 293 LRAIRPDLCLSSDFIVGFPGETEREFEQTLKLVKDIAFDLSFVFIYSPRPGTPAANLHDD 352

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSVVL 440
                K  RL  L + +  +    N   VG +   L+E    K+  +L  R+   + V  
Sbjct: 353 TPHEEKVRRLEALNEVIEAETAHINQTMVGTVQRCLVEGISKKDPDQLQARTANNRVVNF 412

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 I  +I + IT+    +L G+ V
Sbjct: 413 TGTPDMINQMIDLEITEAYTFSLRGKTV 440


>gi|225076607|ref|ZP_03719806.1| hypothetical protein NEIFLAOT_01655 [Neisseria flavescens
           NRL30031/H210]
 gi|224952107|gb|EEG33316.1| hypothetical protein NEIFLAOT_01655 [Neisseria flavescens
           NRL30031/H210]
          Length = 440

 Score =  376 bits (966), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 196/448 (43%), Positives = 283/448 (63%), Gaps = 13/448 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQ--GYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           ++ F++++GCQMN YDS +M  +   +  G E+V   D+AD+I+ NTC +REKA EKV+S
Sbjct: 2   KKVFIRTFGCQMNEYDSEKMLSVLAEEHGGIEQVTQADEADIILFNTCSVREKAQEKVFS 61

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-E 141
            LGR+R LK    ++  DL++ VAGCVA  EGE I++R+P V+VV GPQT +RLP+++ +
Sbjct: 62  DLGRVRPLK----EKNPDLIIGVAGCVASQEGENIIKRAPYVDVVFGPQTLHRLPKMIVD 117

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           +   G   VD  +   +KF+ L        R  G  AF++I EGC K+C+FCVVPYTRG 
Sbjct: 118 KETSGLSQVDISFPEIEKFDHLPPA-----RVEGGAAFVSIMEGCSKYCSFCVVPYTRGE 172

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR L+ V+ E   L   GV EI LLGQNVNA+RG+  +GE C F+ LL  + EI G+ 
Sbjct: 173 EFSRPLNDVLTEIAGLAQQGVKEINLLGQNVNAYRGEMENGEICDFATLLRIVHEIPGIE 232

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHPR+ +D +I+ + DL  L+ +LHLP+QSGSDR+L +M R +TA EY+ II +
Sbjct: 233 RMRFTTSHPREFTDAIIECYRDLPKLVSHLHLPIQSGSDRVLSAMKRGYTALEYKSIIRK 292

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R++RPD+ +SSDFIVGFPGET+ +F  T+ LV  I +  +F F YSPR GTP +N+ + 
Sbjct: 293 LRAIRPDLCLSSDFIVGFPGETEREFEQTLKLVKDIAFDLSFVFIYSPRPGTPAANLPDD 352

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSVVL 440
                K  RL  L + +  +    N   VG +   L+E    K+  +L  R+   + V  
Sbjct: 353 TPHEEKVRRLEALNEVIEAETARINQTMVGTVQRCLVEGISKKDPDQLQARTANNRVVNF 412

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 I  +I + IT+    +L G+ V
Sbjct: 413 TGTPDMINQMIDLEITEAYTFSLKGKPV 440


>gi|229890696|sp|Q39D51|MIAB_BURS3 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
          Length = 457

 Score =  376 bits (966), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 200/454 (44%), Positives = 293/454 (64%), Gaps = 18/454 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ +VK++GCQMN YDS +M D+   ++G E+ ++ +DAD+I+ NTC +REKA EKV+S 
Sbjct: 3   KKVYVKTFGCQMNEYDSDKMVDVLNAAEGLEKTDTPEDADIILFNTCSVREKAQEKVFSD 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE-R 142
           LGR+R LK +  K G  LL+ V GCVA  EG  I+ R+P V++V GPQT +RLP++++ R
Sbjct: 63  LGRVRELKEA--KPG--LLIGVGGCVASQEGASIVSRAPYVDLVFGPQTLHRLPQMIDAR 118

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
              G+  VD  +   +KF+ L        R  G +AF++I EGC K+C++CVVPYTRG E
Sbjct: 119 RESGRAQVDISFPEIEKFDHLPPA-----RVEGPSAFVSIMEGCSKYCSYCVVPYTRGDE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG--EKCTFSDLLYSLSEIKGL 260
           +SR L  V+ E   L D GV E+TLLGQNVNA+RG    G  E   F+ L+  +++I G+
Sbjct: 174 VSRPLDDVLTEVAGLADQGVREVTLLGQNVNAYRGALAAGSSEIADFATLIEYVADIPGI 233

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+RYTTSHP++ +  LI  +  +  L+ +LHLPVQ GSDRIL +M R +T  EY+ +I 
Sbjct: 234 ERIRYTTSHPKEFTQRLIDTYAKVPKLVNHLHLPVQHGSDRILMAMKRGYTVLEYKSVIR 293

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R++RPD+++S+D IVGFPGET+DDF   M LV ++ Y  +FSF YSPR GTP +N+ +
Sbjct: 294 KLRAIRPDLSLSTDMIVGFPGETEDDFDKMMALVHEMSYDTSFSFIYSPRPGTPAANLHD 353

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSV- 438
               +VK +RL  LQ  + E     + + VG++  +L+E    K+  +L GR+   + V 
Sbjct: 354 DTPRDVKLKRLQHLQATIEENVARISQSMVGKVERILVEGPSRKDPNELAGRTENNRVVN 413

Query: 439 ---VLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
               L S    IG +I V+I      +L GELV+
Sbjct: 414 FPAPLASHPRLIGQMIDVKINHAYPHSLRGELVL 447


>gi|148244830|ref|YP_001219524.1| tRNA-thiotransferase [Candidatus Vesicomyosocius okutanii HA]
 gi|229891022|sp|A5CW77|MIAB_VESOH RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|146326657|dbj|BAF61800.1| tRNA-thiotransferase [Candidatus Vesicomyosocius okutanii HA]
          Length = 442

 Score =  376 bits (966), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 192/447 (42%), Positives = 286/447 (63%), Gaps = 11/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
            + +++++GCQMN YDS +M D+   S      +    AD+++LNTC IREKA +K++  
Sbjct: 3   NKLYIRTFGCQMNEYDSNKMVDILKHSHDLTLTDDATSADVLLLNTCSIREKAQDKLFHQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR   LKN    +  +L++ V GCVA  EGE IL+R+P V+++ GPQT +RLP +L  A
Sbjct: 63  LGRWSKLKN----KNPNLIIGVGGCVASQEGELILKRTPYVDIIFGPQTLHRLPNMLNDA 118

Query: 144 RFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
              K+  +D  +   +KF+ L        R   VTAF++I EGC K+CTFC+VPYTRG E
Sbjct: 119 LNNKKTSIDISFPEIEKFDHLP-----KPRTNSVTAFVSIMEGCSKYCTFCIVPYTRGEE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           ISR  + V++E + L   GV EI LLGQNVNA++G   DGE    + L+  +++I G+ R
Sbjct: 174 ISRPFNDVINEVKILASQGVREINLLGQNVNAYQGSMNDGEVSDLALLINIVAKISGIKR 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +RYTTSHP   SD LI+A+ ++  L+ +LHLPVQSGSD+IL+ M R + + EY+  I ++
Sbjct: 234 IRYTTSHPNQFSDSLIEAYAEVPELVSHLHLPVQSGSDKILRLMKRGYMSIEYKSKIRKL 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R +RPDI+ISSDFI+GFPGE + DF  TM L+D+IG+ ++FSF YS R GTP ++  + +
Sbjct: 294 RKIRPDISISSDFIIGFPGENEKDFLDTMILIDEIGFDKSFSFIYSVRPGTPAASYPDDI 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
           D  VK +RL  +QK +       +   +G I +VL+E   K+  +L GR+  +++     
Sbjct: 354 DIQVKKQRLALIQKTINNNTEHISQLMIGSIQKVLVENITKKGNELFGRTENMRNTHFKG 413

Query: 443 KNHNIGDIIKVRITDVKISTLYGELVV 469
               IG I+ V+IT  + ++L G+L+ 
Sbjct: 414 DKSLIGQIVNVKITKGRGNSLMGDLLT 440


>gi|167625134|ref|YP_001675428.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Shewanella
           halifaxensis HAW-EB4]
 gi|229890651|sp|B0TR38|MIAB_SHEHH RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|167355156|gb|ABZ77769.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Shewanella halifaxensis
           HAW-EB4]
          Length = 475

 Score =  376 bits (965), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 195/447 (43%), Positives = 287/447 (64%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS +M D+    +GY   ++ ++AD+++LNTC IREKA EKV+  
Sbjct: 3   KKLHIKTWGCQMNEYDSSKMADLLDEYEGYTLTDNAEEADVLLLNTCSIREKAQEKVFHQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK+ +     +L++ V GCVA  EG+ I  R+  V+++ GPQT +RLPE++++ 
Sbjct: 63  LGRWKTLKDKK----PELIIGVGGCVASQEGKAIKERAQCVDLIFGPQTLHRLPEMIDQI 118

Query: 144 RFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           R GK+ V+D  +   +KF+RL        R  G +AF++I EGC K+C+FCVVPYTRG E
Sbjct: 119 RAGKKAVIDVSFPEIEKFDRLP-----EPRADGPSAFVSIMEGCSKYCSFCVVPYTRGEE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR L  ++ E  +L + GV E+ LLGQNVNA+RG   D E CTF++LL  ++ I G+ R
Sbjct: 174 VSRPLDDIILEIAQLAEQGVREVNLLGQNVNAYRGATHDDEICTFAELLRYVAAIDGIDR 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LR+TTSHP + +  +I  + D   L+ +LHLPVQSGSD IL  M R H A EY+ II R+
Sbjct: 234 LRFTTSHPIEFTQDIIDVYEDTPELVSFLHLPVQSGSDLILTQMKRGHMAIEYKSIIRRL 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R  RPDI ISSDFI+GFPGE+  DF  TM L++ I +  +FSF YS R GTP +++ + V
Sbjct: 294 RKARPDILISSDFIIGFPGESKQDFADTMKLIEDIQFDHSFSFIYSARPGTPAADLPDDV 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLN 441
             + K ERL  LQ ++ +Q + ++   VG +  +L+E    K   +L GR+   + V   
Sbjct: 354 SLDEKKERLAILQDRITQQAMRYSRQMVGTVQRILVEGPSVKNPMELRGRTENSRVVNFE 413

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
             + +IG  + V I DV  ++L G  +
Sbjct: 414 GMHKHIGKFVDVEIVDVYTNSLRGVFI 440


>gi|261822377|ref|YP_003260483.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Pectobacterium wasabiae
           WPP163]
 gi|261606390|gb|ACX88876.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Pectobacterium wasabiae
           WPP163]
          Length = 474

 Score =  376 bits (965), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 198/448 (44%), Positives = 287/448 (64%), Gaps = 14/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS +M D+  S  GYE     ++AD+++LNTC IREKA EKV+  
Sbjct: 3   KKLHIKTWGCQMNEYDSSKMADLLGSTHGYELTEIAEEADVLLLNTCSIREKAQEKVFHQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK+       +L++ V GCVA  EG  I  R+  V+V+ GPQT +RLPE++   
Sbjct: 63  LGRWKALKDL----NPNLIIGVGGCVASQEGAHIRERAHYVDVIFGPQTLHRLPEMINHV 118

Query: 144 RFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           + G R  +VD  +   +KF+RL        R  G TAF++I EGC+K+CTFCVVPYTRG 
Sbjct: 119 Q-GTRSPIVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTFCVVPYTRGE 172

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E+SR    V+ E  +L   GV E+ LLGQNVNA+RG+  DGE C+F++LL  ++ I G+ 
Sbjct: 173 EVSRPCDDVLFEIAQLAAQGVREVNLLGQNVNAYRGETYDGEICSFAELLRLVAAIDGID 232

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHP + +D +I+ + D   L+ +LHLPVQSGSDR+L  M RRHTA EY+ II +
Sbjct: 233 RVRFTTSHPIEFTDDIIRVYEDTPELVSFLHLPVQSGSDRVLTMMKRRHTALEYKAIIRK 292

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           + + RP I ISSDFI+GFPGET  DF  TM L+  + +  ++SF YS R GTP ++M++ 
Sbjct: 293 LHNARPGILISSDFIIGFPGETQADFEQTMKLIADVNFDMSYSFVYSARPGTPAADMVDD 352

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVL 440
           V E  K +RL  LQ+++ +Q + F+   +G +  +L+E   ++   +L GR+   + V  
Sbjct: 353 VPEEEKKQRLYLLQERITQQAMRFSRLMLGTVQRILVEGTSRKSVMELSGRTENNRVVNF 412

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 IG  + V I DV  ++L G +V
Sbjct: 413 EGTPDMIGKFVDVEIVDVYTNSLRGIVV 440


>gi|296103382|ref|YP_003613528.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
 gi|295057841|gb|ADF62579.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
          Length = 474

 Score =  376 bits (965), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 194/448 (43%), Positives = 289/448 (64%), Gaps = 14/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS +M D+   + GY+   +  +AD+++LNTC IREKA EKV+  
Sbjct: 3   KKLHIKTWGCQMNEYDSSKMADLLDTTHGYQLTENAKEADVLLLNTCSIREKAQEKVFHV 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK    ++  DL++ V GCVA  EG+ I +R+P V++V GPQT +RLPE++ + 
Sbjct: 63  LGRWKLLK----RKNPDLIIGVGGCVASQEGKLIRQRAPYVDIVFGPQTLHRLPEMINKV 118

Query: 144 RFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           R G R  VVD  +   +KF+RL        R  G TAF++I EGC+K+CT+CVVPYTRG 
Sbjct: 119 R-GDRSPVVDVSFPEIEKFDRLP-----EPRADGPTAFVSIMEGCNKYCTYCVVPYTRGE 172

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E+SR    ++ E  +L   GV E+ LLGQNVNAWRG+  DG   +F++LL  ++ I G+ 
Sbjct: 173 EVSRPADDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTTGSFAELLRLVAAIDGID 232

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHP + +D +I  + D   L+ +LHLP+Q GSDR+L  M R HT  EY+  I +
Sbjct: 233 RIRFTTSHPMEFTDDIIDVYRDTPELVSFLHLPIQCGSDRVLNLMGRPHTVLEYKSTIRK 292

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R  RPDI ISSDFIVGFPGET DDF  TM L+ ++ +  ++SF +S R GTP ++M++ 
Sbjct: 293 LREARPDIQISSDFIVGFPGETADDFERTMKLIGEVNFDVSYSFIFSARPGTPAADMVDD 352

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVL 440
           V E  K +RL  LQ+++ +Q  +++   +G +  +L+E   ++   +L GR+   + V  
Sbjct: 353 VPEEEKKQRLYILQERINQQANAWSRRMLGTVQRILVEGTSRKSIMELSGRTENNRVVNF 412

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 IG  + V I +V  ++L G+LV
Sbjct: 413 EGTPDMIGKFVDVEIVEVLTNSLRGKLV 440


>gi|184159545|ref|YP_001847884.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Acinetobacter
           baumannii ACICU]
 gi|332873010|ref|ZP_08440969.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Acinetobacter baumannii
           6014059]
 gi|229890409|sp|B2HZ55|MIAB_ACIBC RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|183211139|gb|ACC58537.1| 2-methylthioadenine synthetase [Acinetobacter baumannii ACICU]
 gi|322509455|gb|ADX04909.1| 2-methylthioadenine synthetase [Acinetobacter baumannii 1656-2]
 gi|323519476|gb|ADX93857.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Acinetobacter
           baumannii TCDC-AB0715]
 gi|332738792|gb|EGJ69660.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Acinetobacter baumannii
           6014059]
          Length = 483

 Score =  376 bits (965), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 199/455 (43%), Positives = 297/455 (65%), Gaps = 20/455 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ ++++ GCQMN YDS RM D+   S GY   N+ ++AD++++NTC IREKA EKV+S 
Sbjct: 31  KKLYIETQGCQMNEYDSHRMADLLGDSHGYVLTNNPNEADILLMNTCSIREKAQEKVFSE 90

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER- 142
           LGR R LK    ++  DL++ V GCVA  EG+ I +R+P V+++ GPQT +RLP++L++ 
Sbjct: 91  LGRWRKLK----EQNPDLVIGVGGCVASQEGDNIQKRAPYVDMIFGPQTLHRLPQMLDQH 146

Query: 143 -ARFGK------RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
            A+  K      ++VD  +   +KF+ L        R  G  AF++I EGC K+C+FCVV
Sbjct: 147 HAQVEKPKKEKIKLVDISFPDIEKFDFLP-----EPRVEGFKAFVSIMEGCSKYCSFCVV 201

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
           PYTRG E+SR L  V+ E   L + GV EI+LLGQNVN +RG+  +G  CTF +LL  ++
Sbjct: 202 PYTRGEEVSRPLDDVLAEIAGLAEKGVREISLLGQNVNGYRGETFEGGICTFPELLRLVA 261

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
           EI G+ RLRYTTSHP + SD LI+ + DL  ++ +LHLPVQSGS+ +LK+M R HT   Y
Sbjct: 262 EIPGIGRLRYTTSHPLEFSDELIQCYEDLPQMVSHLHLPVQSGSNDVLKAMKRNHTIDVY 321

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
              I ++R +RPD+ +SSDFI+GFPGETD++F  T+  +  + +  ++SF YS R GTP 
Sbjct: 322 IDKIAKLRKIRPDMHLSSDFIIGFPGETDENFAETLQFIKDLDFDHSYSFVYSKRPGTPA 381

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPW 434
           S++ +   E+VK ERL  +Q+ +++  +   DA +G+I  VLIEK   ++   LVG +  
Sbjct: 382 SDLPDTTPEHVKKERLAQVQQVIKQSSIEKTDAMLGKIERVLIEKVSDQDPNILVGTADN 441

Query: 435 LQSVVLNSKNHNIGDIIKVRITDVK-ISTLYGELV 468
            + V        IG   ++ IT++K ++ +YGEL+
Sbjct: 442 TRLVTFVGDASWIGRFAEIEITEIKTLNLVYGELL 476


>gi|239504221|ref|ZP_04663531.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Acinetobacter baumannii
           AB900]
          Length = 483

 Score =  376 bits (965), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 198/455 (43%), Positives = 297/455 (65%), Gaps = 20/455 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ ++++ GCQMN YDS RM D+   S GY   N+ ++AD++++NTC IREKA EKV+S 
Sbjct: 31  KKLYIETQGCQMNEYDSHRMADLLGDSHGYVLTNNPNEADILLMNTCSIREKAQEKVFSE 90

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER- 142
           LGR R LK    ++  DL++ V GCVA  EG+ I +R+P V+++ GPQT +RLP++L++ 
Sbjct: 91  LGRWRKLK----EQNPDLVIGVGGCVASQEGDNIQKRAPYVDMIFGPQTLHRLPQMLDQH 146

Query: 143 -ARFGK------RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
            A+  K      ++VD  +   +KF+ L        R  G  AF++I EGC K+C+FCVV
Sbjct: 147 HAQVEKPKKEKIKLVDISFPDIEKFDFLP-----EPRVEGFKAFVSIMEGCSKYCSFCVV 201

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
           PYTRG E+SR L  V+ E   L + GV EI+LLGQNVN +RG+  +G  CTF +LL  ++
Sbjct: 202 PYTRGEEVSRPLDDVLAEIAGLAEKGVREISLLGQNVNGYRGETFEGGICTFPELLRLVA 261

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
           EI G+ RLRYTTSHP + SD LI+ + DL  ++ +LHLPVQSGS+ +LK+M R HT   Y
Sbjct: 262 EIPGIGRLRYTTSHPLEFSDELIQCYEDLPQMVSHLHLPVQSGSNDVLKAMKRNHTIDVY 321

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
              I ++R +RPD+ +SSDFI+GFPGETD++F  T+  +  + +  ++SF YS R GTP 
Sbjct: 322 IDKIAKLRKIRPDMHLSSDFIIGFPGETDENFAETLQFIKDLNFDHSYSFVYSKRPGTPA 381

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPW 434
           S++ +   E+VK ERL  +Q+ +++  +   DA +G+I  VLIEK   ++   LVG +  
Sbjct: 382 SDLPDTTPEHVKKERLAQVQQVIKQSSIEKTDAMLGKIERVLIEKVSDQDPNILVGTADN 441

Query: 435 LQSVVLNSKNHNIGDIIKVRITDVK-ISTLYGELV 468
            + V        +G   ++ IT++K ++ +YGEL+
Sbjct: 442 TRLVTFVGDASWVGRFAEIEITEIKTLNLVYGELL 476


>gi|194097636|ref|YP_002000671.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Neisseria
           gonorrhoeae NCCP11945]
 gi|239998169|ref|ZP_04718093.1| Bifunctional enzyme involved in thiolation and methylation of tRNA
           [Neisseria gonorrhoeae 35/02]
 gi|240079933|ref|ZP_04724476.1| Bifunctional enzyme involved in thiolation and methylation of tRNA
           [Neisseria gonorrhoeae FA19]
 gi|240114885|ref|ZP_04728947.1| Bifunctional enzyme involved in thiolation and methylation of tRNA
           [Neisseria gonorrhoeae PID18]
 gi|240122726|ref|ZP_04735682.1| Bifunctional enzyme involved in thiolation and methylation of tRNA
           [Neisseria gonorrhoeae PID332]
 gi|240124916|ref|ZP_04737802.1| Bifunctional enzyme involved in thiolation and methylation of tRNA
           [Neisseria gonorrhoeae SK-92-679]
 gi|240127427|ref|ZP_04740088.1| Bifunctional enzyme involved in thiolation and methylation of tRNA
           [Neisseria gonorrhoeae SK-93-1035]
 gi|254492946|ref|ZP_05106117.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
 gi|260441300|ref|ZP_05795116.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Neisseria
           gonorrhoeae DGI2]
 gi|268594020|ref|ZP_06128187.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
 gi|268596073|ref|ZP_06130240.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
 gi|268600543|ref|ZP_06134710.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18]
 gi|268681325|ref|ZP_06148187.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332]
 gi|268683496|ref|ZP_06150358.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
 gi|268685802|ref|ZP_06152664.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035]
 gi|291044655|ref|ZP_06570364.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
 gi|293397764|ref|ZP_06641970.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Neisseria gonorrhoeae
           F62]
 gi|229890573|sp|B4RNW8|MIAB_NEIG2 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|193932926|gb|ACF28750.1| Bifunctional enzyme involved in thiolation and methylation of tRNA
           [Neisseria gonorrhoeae NCCP11945]
 gi|226511986|gb|EEH61331.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
 gi|268547409|gb|EEZ42827.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
 gi|268549861|gb|EEZ44880.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
 gi|268584674|gb|EEZ49350.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18]
 gi|268621609|gb|EEZ54009.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332]
 gi|268623780|gb|EEZ56180.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
 gi|268626086|gb|EEZ58486.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035]
 gi|291011549|gb|EFE03545.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
 gi|291611710|gb|EFF40779.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Neisseria gonorrhoeae
           F62]
 gi|317163459|gb|ADV07000.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Neisseria
           gonorrhoeae TCDC-NG08107]
          Length = 442

 Score =  376 bits (965), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 195/448 (43%), Positives = 283/448 (63%), Gaps = 13/448 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQ--GYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           ++ F++++GCQMN YDS +M  +   +  G E+V   D+AD+I+ NTC +REKA EKV+S
Sbjct: 2   KKVFIRTFGCQMNEYDSEKMLSVLAEEHGGIEQVTQADEADIILFNTCSVREKAQEKVFS 61

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-E 141
            LGR+R LK    ++   L++ VAGCVA  EGE I++R+P V+VV GPQT +RLP+++ +
Sbjct: 62  DLGRVRPLK----EKNPGLIIGVAGCVASQEGENIIKRAPYVDVVFGPQTLHRLPKMIVD 117

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           +   G   VD  +   +KF+ L        R  G  AF++I EGC K+C+FCVVPYTRG 
Sbjct: 118 KETSGLSQVDISFPEIEKFDHLPPA-----RVEGGAAFVSIMEGCSKYCSFCVVPYTRGE 172

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR L+ V+ E   L   GV EI LLGQNVNA+RG+  DGE C F+ LL  + EI G+ 
Sbjct: 173 EFSRPLNDVLTEIANLAQQGVKEINLLGQNVNAYRGEMDDGEICDFATLLRIVHEIPGIE 232

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHPR+ +D +I+ + DL  L+ +LHLP+QSGSDR+L +M R +TA EY+ II +
Sbjct: 233 RMRFTTSHPREFTDSIIECYRDLPKLVSHLHLPIQSGSDRVLSAMKRGYTALEYKSIIRK 292

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R++RPD+ +SSDFIVGFPGET+ +F  T+ LV  I +  +F F YSPR GTP +N+ + 
Sbjct: 293 LRAIRPDLCLSSDFIVGFPGETEREFEQTLKLVKDIAFDLSFVFIYSPRPGTPAANLPDD 352

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSVVL 440
                K  RL  L + +  +    N   +G +   L+E    K+  +L  R+   + V  
Sbjct: 353 TPHEEKVRRLEALNEVIEAETARINQTMIGTVQRCLVEGISKKDPDQLQARTANNRVVNF 412

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 I  +I + IT+    +L G++V
Sbjct: 413 TGTPDMINQMIDLEITEAYTFSLRGKIV 440


>gi|78067490|ref|YP_370259.1| tRNA-i(6)A37 modification enzyme MiaB [Burkholderia sp. 383]
 gi|77968235|gb|ABB09615.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia sp. 383]
          Length = 498

 Score =  376 bits (965), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 200/454 (44%), Positives = 293/454 (64%), Gaps = 18/454 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ +VK++GCQMN YDS +M D+   ++G E+ ++ +DAD+I+ NTC +REKA EKV+S 
Sbjct: 44  KKVYVKTFGCQMNEYDSDKMVDVLNAAEGLEKTDTPEDADIILFNTCSVREKAQEKVFSD 103

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE-R 142
           LGR+R LK +  K G  LL+ V GCVA  EG  I+ R+P V++V GPQT +RLP++++ R
Sbjct: 104 LGRVRELKEA--KPG--LLIGVGGCVASQEGASIVSRAPYVDLVFGPQTLHRLPQMIDAR 159

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
              G+  VD  +   +KF+ L        R  G +AF++I EGC K+C++CVVPYTRG E
Sbjct: 160 RESGRAQVDISFPEIEKFDHLPPA-----RVEGPSAFVSIMEGCSKYCSYCVVPYTRGDE 214

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG--EKCTFSDLLYSLSEIKGL 260
           +SR L  V+ E   L D GV E+TLLGQNVNA+RG    G  E   F+ L+  +++I G+
Sbjct: 215 VSRPLDDVLTEVAGLADQGVREVTLLGQNVNAYRGALAAGSSEIADFATLIEYVADIPGI 274

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+RYTTSHP++ +  LI  +  +  L+ +LHLPVQ GSDRIL +M R +T  EY+ +I 
Sbjct: 275 ERIRYTTSHPKEFTQRLIDTYAKVPKLVNHLHLPVQHGSDRILMAMKRGYTVLEYKSVIR 334

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R++RPD+++S+D IVGFPGET+DDF   M LV ++ Y  +FSF YSPR GTP +N+ +
Sbjct: 335 KLRAIRPDLSLSTDMIVGFPGETEDDFDKMMALVHEMSYDTSFSFIYSPRPGTPAANLHD 394

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSV- 438
               +VK +RL  LQ  + E     + + VG++  +L+E    K+  +L GR+   + V 
Sbjct: 395 DTPRDVKLKRLQHLQATIEENVARISQSMVGKVERILVEGPSRKDPNELAGRTENNRVVN 454

Query: 439 ---VLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
               L S    IG +I V+I      +L GELV+
Sbjct: 455 FPAPLASHPRLIGQMIDVKINHAYPHSLRGELVL 488


>gi|237809456|ref|YP_002893896.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Tolumonas
           auensis DSM 9187]
 gi|237501717|gb|ACQ94310.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Tolumonas auensis DSM
           9187]
          Length = 476

 Score =  375 bits (964), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 197/447 (44%), Positives = 285/447 (63%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQ-GYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS +M D+  S  GYE     ++ADL+VLNTC IREKA EK++  
Sbjct: 3   KKLHIKTWGCQMNEYDSAKMVDLLTSSLGYETTELPEEADLLVLNTCSIREKAQEKLFHQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK    K+  +L++ V GCVA  EG+ I  R+P V+VV GPQT +RLP ++++ 
Sbjct: 63  LGRWKELK----KKNPELVIAVGGCVASQEGKAIRSRAPNVDVVFGPQTLHRLPNMIKQV 118

Query: 144 RFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           + G    VD  +   +KF+ L        R  G TA+++I EGC K+CT+CVVPYTRG E
Sbjct: 119 KAGHGAQVDVSFPEIEKFDNLP-----EPRAEGPTAYVSIMEGCSKYCTYCVVPYTRGEE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR    V+ E  +L + GV E+ LLGQNVNA+RG+  DG  C+F+ LL  ++ I G+ R
Sbjct: 174 VSRPQDDVLYEIAQLAEQGVREVNLLGQNVNAYRGETYDGGICSFAQLLRLVAAIDGIDR 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +RYTTSHP + +D +I+ + D   L+ +LHLPVQSGSD+IL  M R HTA EY+  I ++
Sbjct: 234 IRYTTSHPIEFTDDIIEVYKDTPELVNFLHLPVQSGSDKILSMMKRPHTALEYKSKIRKL 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           ++VRPDI ISSDFIVGFPGETD+DF  TM L++ I +  ++SF +S R GTP ++M +  
Sbjct: 294 KAVRPDILISSDFIVGFPGETDEDFAKTMKLIEDIQFDTSYSFVFSARPGTPAADMPDDT 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441
              VK ERL  LQ+ +  Q + ++    G I  +L+E   +    +L GR+   + V   
Sbjct: 354 PMEVKKERLAHLQQTINNQAMQYSRQMHGTIQRILVEGPSRHDIMELCGRTENNRVVNFA 413

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                IG  + V IT+ +  +L G+++
Sbjct: 414 GDARLIGRFVDVEITEARPHSLRGKII 440


>gi|220935460|ref|YP_002514359.1| 2-alkenal reductase [Thioalkalivibrio sp. HL-EbGR7]
 gi|219996770|gb|ACL73372.1| 2-alkenal reductase [Thioalkalivibrio sp. HL-EbGR7]
          Length = 453

 Score =  375 bits (964), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 204/445 (45%), Positives = 286/445 (64%), Gaps = 12/445 (2%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + +++++GCQMN YDS +M D+   S+G    +  + AD+++LNTC IREKA EKV+S L
Sbjct: 4   KVYIQTHGCQMNEYDSGKMLDVLRESEGMVLTDDPEQADVLLLNTCSIREKAQEKVFSLL 63

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR R LK +R      +++ V GCVA  EGE +  R+P V+VV GPQT +RLPE++  AR
Sbjct: 64  GRWRALKEARPG----VVIGVGGCVASQEGEALRERAPFVDVVFGPQTLHRLPEMVRSAR 119

Query: 145 F-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             G  VVD  +   +KF+RL        R  G +AF++I EGC K+CTFCVVPYTRG EI
Sbjct: 120 LKGLPVVDISFPEIEKFDRLP-----EPRAEGPSAFVSIMEGCSKYCTFCVVPYTRGEEI 174

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR    V+ E  +L   GV EI LLGQNVNA+RG   DGE    + L++ ++ + G+ R+
Sbjct: 175 SRPFDDVLAEVAQLAAQGVREINLLGQNVNAYRGPMHDGEIADLALLIHYVAAVDGIERI 234

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+TTSHP + SD LI+A  ++  L+ ++HLPVQSGSDRIL +M R HTA EY+  I R+R
Sbjct: 235 RFTTSHPVEFSDSLIRAFAEVPELVSHVHLPVQSGSDRILAAMKRGHTALEYKSKIRRLR 294

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
             RPDI++SSDFIVGFPGETD DF ATM+L++++G+ Q+FSF YS R GTP S++ + V 
Sbjct: 295 EARPDISLSSDFIVGFPGETDADFEATMELIEQVGFDQSFSFIYSRRPGTPASSLPDDVP 354

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSPWLQSVVLNS 442
             VK  RL  LQ ++ E   + + + VG    +L+E    K+  ++ GR+   + V  + 
Sbjct: 355 LEVKKARLARLQARINEMAQAISQSMVGSRQRILVEGPSKKDPAQMAGRTANNRVVNFDG 414

Query: 443 KNHNIGDIIKVRITDVKISTLYGEL 467
                G  + V IT    ++L G L
Sbjct: 415 AAELAGRFVDVHITQALANSLRGRL 439


>gi|161523785|ref|YP_001578797.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Burkholderia
           multivorans ATCC 17616]
 gi|189351454|ref|YP_001947082.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Burkholderia
           multivorans ATCC 17616]
 gi|221200110|ref|ZP_03573153.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia multivorans
           CGD2M]
 gi|221206737|ref|ZP_03579749.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia multivorans
           CGD2]
 gi|229890459|sp|A9AFF8|MIAB_BURM1 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|160341214|gb|ABX14300.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia multivorans
           ATCC 17616]
 gi|189335476|dbj|BAG44546.1| bifunctional enzyme [Burkholderia multivorans ATCC 17616]
 gi|221173392|gb|EEE05827.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia multivorans
           CGD2]
 gi|221180349|gb|EEE12753.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia multivorans
           CGD2M]
          Length = 457

 Score =  375 bits (964), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 198/454 (43%), Positives = 292/454 (64%), Gaps = 18/454 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ +VK++GCQMN YDS +M D+   ++G E+ +S +DAD+I+ NTC +REKA EKV+S 
Sbjct: 3   KKVYVKTFGCQMNEYDSDKMVDVLNAAEGLEKTDSPEDADIILFNTCSVREKAQEKVFSD 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR+R LK ++     DLL+ V GCVA  EG  I+ R+P V++V GPQT +RLP++++  
Sbjct: 63  LGRVRELKEAK----PDLLIGVGGCVASQEGASIVSRAPYVDLVFGPQTLHRLPQMIDAR 118

Query: 144 RF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           R  G+  VD  +   +KF+ L        R  G TAF++I EGC K+C++CVVPYTRG E
Sbjct: 119 RTSGRAQVDITFPEIEKFDHLPPA-----RVEGPTAFVSIMEGCSKYCSYCVVPYTRGDE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG--EKCTFSDLLYSLSEIKGL 260
           +SR L  V+ E   L D GV E+TLLGQNVNA+RG    G  E   F+ L+  +++I G+
Sbjct: 174 VSRPLDDVLTEVAGLADQGVREVTLLGQNVNAYRGALTAGSSEVADFATLIEYVADIPGI 233

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+RYTTSHP++ +  LI  +  +  L+ +LHLPVQ GSDRIL +M R +T  EY+ +I 
Sbjct: 234 ERIRYTTSHPKEFTQRLIDTYAKVPKLVNHLHLPVQHGSDRILMAMKRGYTVLEYKSVIR 293

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R++RPD+++S+D IVGFPGET++DF   M LV  + Y  +FSF YSPR GTP +N+ +
Sbjct: 294 KLRAIRPDLSLSTDLIVGFPGETEEDFDKMMALVHDMRYDTSFSFIYSPRPGTPAANLHD 353

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSV- 438
               +VK +RL  +Q  + E     + + VG++  +L+E    K+  +L GR+   + V 
Sbjct: 354 DTPRDVKLKRLQLVQATIEENVARISQSMVGKVERILVEGPSRKDPNELAGRTENNRVVN 413

Query: 439 ---VLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
               L +    IG +I V+I      +L GELV+
Sbjct: 414 FPAPLAAHPRLIGQMIDVKINHAYPHSLRGELVL 447


>gi|54310003|ref|YP_131023.1| putative 2-methylthioadenine synthetase [Photobacterium profundum
           SS9]
 gi|81398996|sp|Q6LNA5|MIAB_PHOPR RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|46914442|emb|CAG21221.1| putative 2-methylthioadenine synthetase [Photobacterium profundum
           SS9]
          Length = 474

 Score =  375 bits (964), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 198/449 (44%), Positives = 287/449 (63%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           +P++  +K++GCQMN YDS +M D+   + G+E     ++AD+++LNTC IREKA EKV+
Sbjct: 1   MPKKLLIKTWGCQMNEYDSSKMADLLNAANGFELTEVPEEADVLLLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR + LK  +     DL++ V GCVA  EG+ I +R+P V+V+ GPQT +RLP++++
Sbjct: 61  HQLGRWKRLKEKK----PDLVIGVGGCVATQEGDAIRKRAPYVDVIFGPQTLHRLPQMIK 116

Query: 142 RARFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
            ++     V+D  +   +KF+ L        R  GVTAF++I EGC K+CT+CVVPYTRG
Sbjct: 117 DSQSNHGPVMDISFPEVEKFDNLP-----EPRADGVTAFVSIMEGCSKYCTYCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR +  V+ E  +L + GV E+ LLGQNVNA+RG   DGE  +F++LL  ++ I G+
Sbjct: 172 EEVSRPIDDVLYEVAQLAEQGVREVNLLGQNVNAFRGPTHDGEMASFAELLRLVAAIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+RYTTSHP + +D +I+ + D   L+ YLHLPVQSGSDRIL  M R HT  EY+  I 
Sbjct: 232 DRIRYTTSHPIEFTDDIIEVYTDTPELVNYLHLPVQSGSDRILTMMKRPHTVLEYKSKIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R VRPDI +SSDFIV FPGE+D DF+ TM L+  I +  ++SF +SPR GTP ++   
Sbjct: 292 KLRKVRPDITMSSDFIVAFPGESDQDFQDTMKLIRDIDFDISYSFVFSPRPGTPAADYPC 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439
            + E VK ERL  LQ+++  Q +      +     +L+E   ++   +L GR+   + V 
Sbjct: 352 DISEKVKKERLYELQQQINTQAMRHARQMLNTEQRILVEGPSRKNIMELRGRTENNRIVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG  + V ITDV  ++L GELV
Sbjct: 412 FEGSAELIGQFVDVNITDVFTNSLRGELV 440


>gi|330887928|gb|EGH20589.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Pseudomonas
           syringae pv. mori str. 301020]
          Length = 442

 Score =  375 bits (964), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 198/448 (44%), Positives = 282/448 (62%), Gaps = 13/448 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ +++++GCQMN YDS RM D+    Q  E     +DAD+I+LNTC IRE+A ++VYS 
Sbjct: 3   KKLYIETHGCQMNEYDSSRMVDLLGEHQALEVTARAEDADVILLNTCSIRERAQDRVYSQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR R LK +      ++++ V GCVA  EG  I  R+P V+VV GPQT +RLPE+++ A
Sbjct: 63  LGRWRELKLA----NPEMVIAVGGCVASQEGAAIRDRAPYVDVVFGPQTLHRLPEMIDAA 118

Query: 144 RFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           R  +   VD  +   +KF+ L        R  G +A++++ EGC K+CTFCVVPYTRG E
Sbjct: 119 RITRLPQVDVSFPEIEKFDHLP-----EPRVDGPSAYVSVMEGCSKYCTFCVVPYTRGEE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR    V+ E   L +NGV E+TLLGQNVN +RG   DG     +DL+  ++ + G+ R
Sbjct: 174 VSRPFDDVLSEVIHLAENGVREVTLLGQNVNGYRGTTHDGRVADLADLIRVVAAVDGIDR 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +RYTTS P + SD LI+AH ++  L+ +LHLPVQSGSDRIL +M R HT  EY+  + ++
Sbjct: 234 IRYTTSPPLEFSDSLIQAHAEVPELVKHLHLPVQSGSDRILAAMKRNHTTLEYKSRLRKL 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+  P I+ISSDFIVGFPGET+ DF  TM L++ +G+  +FSF YSPR GTP +++ +  
Sbjct: 294 RAAVPGISISSDFIVGFPGETEKDFDNTMKLIEDVGFDFSFSFVYSPRPGTPAADLKDDT 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLN 441
            E +K ERL  LQ +L +Q    +   VG I  +L+  +  K+ G+L GR+   + V   
Sbjct: 354 PEALKKERLAALQHRLNQQGFEISRQMVGSIQRILVTDYSKKDPGELQGRTENNRIVNFR 413

Query: 442 SKNHN-IGDIIKVRITDVKISTLYGELV 468
             N   IG    V I D +  +L G L+
Sbjct: 414 CNNPKLIGQFADVHIDDAQPHSLRGSLL 441


>gi|260557080|ref|ZP_05829297.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Acinetobacter baumannii
           ATCC 19606]
 gi|260409686|gb|EEX02987.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Acinetobacter baumannii
           ATCC 19606]
          Length = 483

 Score =  375 bits (964), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 198/455 (43%), Positives = 297/455 (65%), Gaps = 20/455 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ ++++ GCQMN YDS RM D+   S GY   N+ ++AD++++NTC IREKA EKV+S 
Sbjct: 31  KKLYIETQGCQMNEYDSHRMADLLGDSHGYMLTNNPNEADILLMNTCSIREKAQEKVFSE 90

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER- 142
           LGR R LK    ++  DL++ V GCVA  EG+ I +R+P V+++ GPQT +RLP++L++ 
Sbjct: 91  LGRWRKLK----EQNPDLVIGVGGCVASQEGDNIQKRAPYVDMIFGPQTLHRLPQMLDQH 146

Query: 143 -ARFGK------RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
            A+  K      ++VD  +   +KF+ L        R  G  AF++I EGC K+C+FCVV
Sbjct: 147 HAQVEKPKKEKIKLVDISFPDIEKFDFLP-----EPRVEGFKAFVSIMEGCSKYCSFCVV 201

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
           PYTRG E+SR L  V+ E   L + GV EI+LLGQNVN +RG+  +G  CTF +LL  ++
Sbjct: 202 PYTRGEEVSRPLDDVLAEIAGLAEKGVREISLLGQNVNGYRGETFEGGICTFPELLRLVA 261

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
           EI G+ RLRYTTSHP + SD LI+ + DL  ++ +LHLPVQSGS+ +LK+M R HT   Y
Sbjct: 262 EIPGIGRLRYTTSHPLEFSDELIQCYEDLPQMVSHLHLPVQSGSNDVLKAMKRNHTIDVY 321

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
              I ++R +RPD+ +SSDFI+GFPGETD++F  T+  +  + +  ++SF YS R GTP 
Sbjct: 322 IDKIAKLRKIRPDMHLSSDFIIGFPGETDENFAETLQFIKDLDFDHSYSFVYSKRPGTPA 381

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPW 434
           S++ +   E+VK ERL  +Q+ +++  +   DA +G+I  VLIEK   ++   LVG +  
Sbjct: 382 SDLPDTTPEHVKKERLAQVQQVIKQSSIEKTDAMLGKIERVLIEKVSDQDPNILVGTADN 441

Query: 435 LQSVVLNSKNHNIGDIIKVRITDVK-ISTLYGELV 468
            + V        +G   ++ IT++K ++ +YGEL+
Sbjct: 442 TRLVTFVGDASWVGRFAEIEITEIKTLNLVYGELL 476


>gi|240013351|ref|ZP_04720264.1| Bifunctional enzyme involved in thiolation and methylation of tRNA
           [Neisseria gonorrhoeae DGI18]
 gi|240015796|ref|ZP_04722336.1| Bifunctional enzyme involved in thiolation and methylation of tRNA
           [Neisseria gonorrhoeae FA6140]
 gi|240112139|ref|ZP_04726629.1| Bifunctional enzyme involved in thiolation and methylation of tRNA
           [Neisseria gonorrhoeae MS11]
 gi|240117089|ref|ZP_04731151.1| Bifunctional enzyme involved in thiolation and methylation of tRNA
           [Neisseria gonorrhoeae PID1]
 gi|240120424|ref|ZP_04733386.1| Bifunctional enzyme involved in thiolation and methylation of tRNA
           [Neisseria gonorrhoeae PID24-1]
 gi|268598198|ref|ZP_06132365.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11]
 gi|268602776|ref|ZP_06136943.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1]
 gi|268582329|gb|EEZ47005.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11]
 gi|268586907|gb|EEZ51583.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1]
          Length = 442

 Score =  375 bits (964), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 195/448 (43%), Positives = 283/448 (63%), Gaps = 13/448 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQ--GYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           ++ F++++GCQMN YDS +M  +   +  G E+V   D+AD+I+ NTC +REKA EKV+S
Sbjct: 2   KKVFIRTFGCQMNEYDSEKMLSVLAEEHGGIEQVTQADEADIILFNTCSVREKAQEKVFS 61

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-E 141
            LGR+R LK    ++   L++ VAGCVA  EGE I++R+P V+VV GPQT +RLP+++ +
Sbjct: 62  DLGRVRPLK----EKNPGLIIGVAGCVASQEGENIIKRAPYVDVVFGPQTLHRLPKMIVD 117

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           +   G   VD  +   +KF+ L        R  G  AF++I EGC K+C+FCVVPYTRG 
Sbjct: 118 KETSGLSQVDISFPEIEKFDHLPPA-----RVEGGAAFVSIMEGCSKYCSFCVVPYTRGE 172

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR L+ V+ E   L   GV EI LLGQNVNA+RG+  DGE C F+ LL  + EI G+ 
Sbjct: 173 EFSRPLNDVLAEIANLAQQGVKEINLLGQNVNAYRGEMDDGEICDFATLLRIVHEIPGIE 232

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHPR+ +D +I+ + DL  L+ +LHLP+QSGSDR+L +M R +TA EY+ II +
Sbjct: 233 RMRFTTSHPREFTDSIIECYRDLPKLVSHLHLPIQSGSDRVLSAMKRGYTALEYKSIIRK 292

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R++RPD+ +SSDFIVGFPGET+ +F  T+ LV  I +  +F F YSPR GTP +N+ + 
Sbjct: 293 LRAIRPDLCLSSDFIVGFPGETEREFEQTLKLVKDIAFDLSFVFIYSPRPGTPAANLPDD 352

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSVVL 440
                K  RL  L + +  +    N   +G +   L+E    K+  +L  R+   + V  
Sbjct: 353 TPHEEKVRRLEALNEVIEAETARINQTMIGTVQRCLVEGISKKDPDQLQARTANNRVVNF 412

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 I  +I + IT+    +L G++V
Sbjct: 413 TGTPDMINQMIDLEITEAYTFSLRGKIV 440


>gi|52841564|ref|YP_095363.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Legionella
           pneumophila subsp. pneumophila str. Philadelphia 1]
 gi|54294222|ref|YP_126637.1| hypothetical protein lpl1287 [Legionella pneumophila str. Lens]
 gi|54297243|ref|YP_123612.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Legionella
           pneumophila str. Paris]
 gi|148358866|ref|YP_001250073.1| tRNA thiotransferase [Legionella pneumophila str. Corby]
 gi|296106913|ref|YP_003618613.1| bifunctional enzyme involved in thiolation and methylation of tRNA
           [Legionella pneumophila 2300/99 Alcoy]
 gi|81368736|sp|Q5WX12|MIAB_LEGPL RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|81370679|sp|Q5X5N2|MIAB_LEGPA RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|81377570|sp|Q5ZVV6|MIAB_LEGPH RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|229890555|sp|A5IBH7|MIAB_LEGPC RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|52628675|gb|AAU27416.1| tRNA thiotransferase [Legionella pneumophila subsp. pneumophila
           str. Philadelphia 1]
 gi|53751028|emb|CAH12439.1| hypothetical protein lpp1288 [Legionella pneumophila str. Paris]
 gi|53754054|emb|CAH15527.1| hypothetical protein lpl1287 [Legionella pneumophila str. Lens]
 gi|148280639|gb|ABQ54727.1| tRNA thiotransferase [Legionella pneumophila str. Corby]
 gi|295648814|gb|ADG24661.1| bifunctional enzyme involved in thiolation and methylation of tRNA
           [Legionella pneumophila 2300/99 Alcoy]
          Length = 447

 Score =  375 bits (964), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 198/447 (44%), Positives = 286/447 (63%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ ++K+ GCQMN YDS +M ++ + S G  + + ++DAD+I+LNTC IREKA EKV+S 
Sbjct: 3   KKLYIKTNGCQMNEYDSSKMAEVLYASHGLVKTDQVEDADVILLNTCSIREKAQEKVFSQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-ER 142
           LG+ R  K     +   +L+ V GCVA  EG +I++R+P V++V GPQT +RLP LL ER
Sbjct: 63  LGQWREYK----AKNPHVLIGVGGCVASQEGSDIIKRAPFVDIVFGPQTLHRLPALLNER 118

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
               K VVD  +   +KF+ L        R  G TAF++I EGC K+C+FCVVPYTRG E
Sbjct: 119 LEKNKSVVDISFPEIEKFDHLPA-----PRAEGPTAFVSIMEGCSKYCSFCVVPYTRGEE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           ISR    V+ E  +L   GV EI LLGQNVN +RG   +G+    + L++ ++ I G+ R
Sbjct: 174 ISRPFDDVLAECYQLASQGVREINLLGQNVNDYRGIMDNGDIADLALLIHYIAAIDGIGR 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP   S+ LI A+ ++  L  +LHLPVQSGSDRIL  M R +TA E++  I ++
Sbjct: 234 IRFTTSHPLAFSENLINAYAEVPELANHLHLPVQSGSDRILSLMKRGYTALEFKSKIRKL 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R +RPDI +S+D IVGFPGETD DF+ TMDLV +IG+  +FSF YSPR GTP +N+ +  
Sbjct: 294 RKIRPDIRLSTDIIVGFPGETDKDFQDTMDLVHEIGFDTSFSFIYSPRPGTPAANLPDDT 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLVGRSPWLQSVVLN 441
              +K +RL  LQ +L      ++++ +G   ++L+    K+   +L GR+   + V  +
Sbjct: 354 PMEIKKQRLQILQNRLLMNAARYSESMIGSKQKILVTGFSKKSSQQLSGRTECNRVVNFD 413

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
              H IG  I V+I+D   ++L G L+
Sbjct: 414 GPPHLIGQFIDVQISDALPNSLRGRLL 440


>gi|70732737|ref|YP_262500.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Pseudomonas
           fluorescens Pf-5]
 gi|123652715|sp|Q4K5I3|MIAB_PSEF5 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|68347036|gb|AAY94642.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Pseudomonas fluorescens
           Pf-5]
          Length = 442

 Score =  375 bits (964), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 199/448 (44%), Positives = 283/448 (63%), Gaps = 13/448 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ +++++GCQMN YDS RM D+    Q  E     +DAD+I+LNTC IRE+A ++VYS 
Sbjct: 3   KKLYIETHGCQMNEYDSSRMVDLLGEHQALEVTARAEDADVILLNTCSIRERAQDRVYSQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR R LK +      D+++ V GCVA  EG  I  R+P V+VV GPQT +RLPE+++ A
Sbjct: 63  LGRWRELKLA----NPDMVIAVGGCVASQEGAAIRDRAPYVDVVFGPQTLHRLPEMIDVA 118

Query: 144 RFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           R  K   VD  +   +KF+ L        R  G +A++++ EGC K+CTFCVVPYTRG E
Sbjct: 119 RITKLPQVDVSFPEIEKFDHLP-----EPRIDGPSAYVSVMEGCSKYCTFCVVPYTRGEE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR    V+ E   L +NGV E+TLLGQNVN +RG+  DG     ++L+  ++ I G+ R
Sbjct: 174 VSRPFDDVIAEIIHLAENGVREVTLLGQNVNGYRGQTHDGRMADLAELIRVVAAIDGIER 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +RYTTSHP + SD LI+AH ++  L+ +LHLPVQSGSDRIL +M R HTA EY+  + ++
Sbjct: 234 IRYTTSHPLEFSDSLIQAHAEVPELVKHLHLPVQSGSDRILAAMKRNHTALEYKSKLRKL 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+  P I ISSDFIVGFPGET+ DF+ TM L++ +G+  ++SF YS R GTP +++ ++ 
Sbjct: 294 RAAVPGICISSDFIVGFPGETEKDFQQTMKLIEDVGFDFSYSFVYSQRPGTPAADLADET 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLN 441
            E VK ERL  LQ +L +Q    +   VG    +L+  +  K+ G+L GR+   + V   
Sbjct: 354 PEAVKKERLNALQHRLNQQGFEISRQMVGSTQRILVTDYSKKDPGELQGRTENNRIVNFR 413

Query: 442 SKNHN-IGDIIKVRITDVKISTLYGELV 468
             N   IG    V I   +  +L G L+
Sbjct: 414 CDNPTLIGQFADVYIDSAQPHSLRGSLL 441


>gi|167585516|ref|ZP_02377904.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia ubonensis
           Bu]
          Length = 457

 Score =  375 bits (963), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 198/454 (43%), Positives = 292/454 (64%), Gaps = 18/454 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ +VK++GCQMN YDS +M D+   ++G E+ ++ +DAD+I+ NTC +REKA EKV+S 
Sbjct: 3   KKVYVKTFGCQMNEYDSDKMVDVLNAAEGLEKTDTPEDADIILFNTCSVREKAQEKVFSD 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR+R LK ++     DLL+ V GCVA  EG  I+ R+P V++V GPQT +RLP+++++ 
Sbjct: 63  LGRVRELKEAK----PDLLIGVGGCVASQEGASIVSRAPYVDLVFGPQTLHRLPQMIDQR 118

Query: 144 RF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           R  G+  VD  +   +KF+ L        R  G +AF++I EGC K+C++CVVPYTRG E
Sbjct: 119 RASGRAQVDITFPEIEKFDHLPPA-----RVEGPSAFVSIMEGCSKYCSYCVVPYTRGDE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG--EKCTFSDLLYSLSEIKGL 260
           +SR L  V+ E   L D GV E+TLLGQNVNA+RG    G  E   F+ L+  +++I G+
Sbjct: 174 VSRPLDDVLTEVAGLADQGVREVTLLGQNVNAYRGALTAGSSEIADFATLIEYVADIPGI 233

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+RYTTSHP++ +  LI  +  +  L+ +LHLPVQ GSDRIL +M R +T  EY+ +I 
Sbjct: 234 ERIRYTTSHPKEFTQRLIDMYAKVPKLVNHLHLPVQHGSDRILMAMKRGYTVLEYKSVIR 293

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R++RPD+++S+D IVGFPGET+ DF   M LV ++ Y  +FSF YSPR GTP +N+ +
Sbjct: 294 KLRAIRPDLSLSTDLIVGFPGETEADFDKMMALVHEMSYDTSFSFIYSPRPGTPAANLHD 353

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSV- 438
                VK +RL  LQ  + E     + + VG++  +L+E    K+  +L GR+   + V 
Sbjct: 354 DTPREVKLKRLQHLQATIEENVARISQSMVGKVERILVEGPSRKDPNELAGRTENNRVVN 413

Query: 439 ---VLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
               L S    IG +I V+I      +L GELV+
Sbjct: 414 FPAPLASHPRLIGQMIDVKINHAYPHSLRGELVL 447


>gi|83719624|ref|YP_441148.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Burkholderia
           thailandensis E264]
 gi|167617973|ref|ZP_02386604.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia
           thailandensis Bt4]
 gi|257140190|ref|ZP_05588452.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia
           thailandensis E264]
 gi|123537978|sp|Q2T101|MIAB_BURTA RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|83653449|gb|ABC37512.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia
           thailandensis E264]
          Length = 457

 Score =  375 bits (963), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 197/454 (43%), Positives = 292/454 (64%), Gaps = 18/454 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ +VK++GCQMN YDS +M D+   ++G E+ +S +DAD+I+ NTC +REKA EKV+S 
Sbjct: 3   KKVYVKTFGCQMNEYDSDKMVDVLNAAEGLEKTDSPEDADIILFNTCSVREKAQEKVFSD 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE-R 142
           LGR+R LK ++     DLL+ V GCVA  EG  I+ R+P V++V GPQT +RLP++++ R
Sbjct: 63  LGRVRELKEAK----PDLLIGVGGCVASQEGASIVARAPYVDLVFGPQTLHRLPQMIDAR 118

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
              G+  VD  +   +KF+ L        R  G +AF++I EGC K+C++CVVPYTRG E
Sbjct: 119 RESGRAQVDITFPEIEKFDHLPPA-----RVEGPSAFVSIMEGCSKYCSYCVVPYTRGDE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG--EKCTFSDLLYSLSEIKGL 260
           +SR L  V+ E   L D GV E+TLLGQNVNA+RG    G  E   F+ L+  +++I G+
Sbjct: 174 VSRPLDDVLTEIAGLADQGVREVTLLGQNVNAYRGALTAGAHEIADFATLIEYVADIPGI 233

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+RYTTSHP++ +  L+  +  +  L+ +LHLPVQ GSDRIL +M R +T  EY+ +I 
Sbjct: 234 ERIRYTTSHPKEFTQRLLDVYAKVPKLVDHLHLPVQHGSDRILMAMKRGYTVLEYKSLIR 293

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R++RP++++S+D IVGFPGET+ DF  TM LV ++ Y  +FSF YSPR GTP +N+ +
Sbjct: 294 KLRAIRPNLSLSTDIIVGFPGETEADFDKTMALVHEMSYDTSFSFIYSPRPGTPAANLAD 353

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSV- 438
                VK ERL  LQ  + E     + + +G++  +L+E    K+  +L GR+   + V 
Sbjct: 354 DTPREVKLERLQHLQATIEENVARISQSMLGKVERILVEGPSRKDPNELAGRTENNRVVN 413

Query: 439 ---VLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
               L +    IG +I V+I      +L GELV+
Sbjct: 414 FPAPLTAHARLIGQMIDVKINHAYPHSLRGELVL 447


>gi|325133510|gb|EGC56173.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Neisseria meningitidis
           M13399]
          Length = 442

 Score =  375 bits (963), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 196/448 (43%), Positives = 283/448 (63%), Gaps = 13/448 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQ--GYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           ++ F++++GCQMN YDS +M  +   +  G E+V   D+AD+I+ NTC +REKA EKV+S
Sbjct: 2   KKVFIRTFGCQMNEYDSDKMLAVLAEEHGGIEQVTQADEADIILFNTCSVREKAQEKVFS 61

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-E 141
            LGR+R LK    ++   L++ VAGCVA  EGE I++R+P V+VV GPQT +RLP+++ +
Sbjct: 62  DLGRVRPLK----EKNPGLIIGVAGCVASQEGENIIKRAPYVDVVFGPQTLHRLPKMIVD 117

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           +   G   VD  +   +KF+ L        R  G  AF++I EGC K+C+FCVVPYTRG 
Sbjct: 118 KETSGLSQVDISFPEIEKFDHLPPA-----RVEGGAAFVSIMEGCSKYCSFCVVPYTRGE 172

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR L+ V+ E   L   GV EI LLGQNVNA+RG+  DGE C F+ LL  + EI G+ 
Sbjct: 173 EFSRPLNDVLTEIANLAQQGVKEINLLGQNVNAYRGEMDDGEICDFATLLRIVHEIPGIE 232

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHPR+ +D +I+ + DL  L+ +LHLP+QSGSDR+L +M R +TA EY+ II +
Sbjct: 233 RMRFTTSHPREFTDSIIECYRDLPKLVSHLHLPIQSGSDRVLSAMKRGYTALEYKSIIRK 292

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R++RPD+ +SSDFIVGFPGET+ +F  T+ LV  I +  +F F YSPR GTP +N+ + 
Sbjct: 293 LRAIRPDLCLSSDFIVGFPGETEREFEQTLKLVKDIAFDLSFVFIYSPRPGTPAANLHDD 352

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSVVL 440
                K  RL  L + +  +    N   VG +   L+E    K+  +L  R+   + V  
Sbjct: 353 TPHEEKVRRLEALNEVIEAETARINQTMVGTVQRCLVEGISKKDPDQLQARTANNRVVNF 412

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 I  +I + IT+    +L G++V
Sbjct: 413 TGTPDMINQMIDLEITEAYTFSLRGKIV 440


>gi|255020721|ref|ZP_05292781.1| tRNA-i(6)A37 methylthiotransferase [Acidithiobacillus caldus ATCC
           51756]
 gi|254969837|gb|EET27339.1| tRNA-i(6)A37 methylthiotransferase [Acidithiobacillus caldus ATCC
           51756]
          Length = 437

 Score =  375 bits (963), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 203/435 (46%), Positives = 285/435 (65%), Gaps = 13/435 (2%)

Query: 36  MNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSR 94
           MN YDS R+ ++   S G + V+    AD++VLNTC IREKA +KVY+ LG  R  K SR
Sbjct: 1   MNEYDSERIGELLAASHGLQLVDDPARADVLVLNTCSIREKAEDKVYTQLGFWRPFKESR 60

Query: 95  IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV-VDTD 153
                ++++ V GCVA  EGE + RR+P V++V GPQT +RL ++L+  R  ++  VD  
Sbjct: 61  ----PEVIIAVGGCVASQEGESLRRRAPFVDIVFGPQTLHRLADMLDACRAQRQPQVDLR 116

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           +   +KF+RL    G    + G TAF+T+QEGCDKFCTFCVVP+TRG E SR +  ++ E
Sbjct: 117 FPELEKFDRLPQRPG----REGPTAFVTVQEGCDKFCTFCVVPHTRGREFSRPMPDILRE 172

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGK-GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
            R+L+D GV E+TLLGQNVNA+RG  GL GE    ++LL  L+ I  L+RLRYTTSHP +
Sbjct: 173 VRQLVDQGVREVTLLGQNVNAYRGATGLIGEG-DLAELLERLARIPDLLRLRYTTSHPNN 231

Query: 273 MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAIS 332
           + D LI AH D+ +L  +LHLPVQSGSDRIL+ M+R+H+   Y   I R+R+ R DI IS
Sbjct: 232 LDDRLIAAHRDIPILAAHLHLPVQSGSDRILRRMHRKHSVASYLDKIARLRAARSDIRIS 291

Query: 333 SDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLL 392
           SDFIVGFPGETD DF AT++L++ + + Q+FSFKYSPR  TP   + + V E VK ERL 
Sbjct: 292 SDFIVGFPGETDADFAATLELIEAVRFDQSFSFKYSPRPNTPALKLKDSVPEGVKDERLA 351

Query: 393 CLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLNSKNHNIGDII 451
            LQ ++     ++++A VG + +VL+     ++  +  G++   +SV      +  G ++
Sbjct: 352 ILQGRIHGLARAYSEALVGTVQDVLVTGPSRRDPCEWTGKTSCNRSVNFAGPANLSGQML 411

Query: 452 KVRITDVKISTLYGE 466
            +RIT    ++L GE
Sbjct: 412 PIRITAALANSLRGE 426


>gi|15677701|ref|NP_274862.1| hypothetical protein NMB1866 [Neisseria meningitidis MC58]
 gi|304388407|ref|ZP_07370514.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Neisseria meningitidis
           ATCC 13091]
 gi|81784211|sp|Q9JXV8|MIAB_NEIMB RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|7227123|gb|AAF42200.1| conserved hypothetical protein [Neisseria meningitidis MC58]
 gi|304337588|gb|EFM03750.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Neisseria meningitidis
           ATCC 13091]
 gi|316985478|gb|EFV64425.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Neisseria meningitidis
           H44/76]
 gi|325139525|gb|EGC62065.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Neisseria meningitidis
           CU385]
 gi|325143760|gb|EGC66077.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Neisseria meningitidis
           M01-240013]
 gi|325200923|gb|ADY96378.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Neisseria meningitidis
           H44/76]
          Length = 442

 Score =  375 bits (963), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 196/448 (43%), Positives = 283/448 (63%), Gaps = 13/448 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQ--GYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           ++ F++++GCQMN YDS +M  +   +  G E+V   D+AD+I+ NTC +REKA EKV+S
Sbjct: 2   KKVFIRTFGCQMNEYDSDKMLAVLAEEHGGIEQVTQADEADIILFNTCSVREKAQEKVFS 61

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-E 141
            LGR+R LK    ++   L++ VAGCVA  EGE I++R+P V+VV GPQT +RLP+++ +
Sbjct: 62  DLGRVRPLK----EKNPGLIIGVAGCVASQEGENIIKRAPYVDVVFGPQTLHRLPKMIVD 117

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           +   G   VD  +   +KF+ L        R  G  AF++I EGC K+C+FCVVPYTRG 
Sbjct: 118 KETSGLSQVDISFPEIEKFDHLPPA-----RVEGGAAFVSIMEGCSKYCSFCVVPYTRGE 172

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR L+ V+ E   L   GV EI LLGQNVNA+RG+  DGE C F+ LL  + EI G+ 
Sbjct: 173 EFSRPLNDVLTEIANLAQQGVKEINLLGQNVNAYRGEMDDGEICDFATLLRIVHEIPGIE 232

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHPR+ +D +I+ + DL  L+ +LHLP+QSGSDR+L +M R +TA EY+ II +
Sbjct: 233 RMRFTTSHPREFTDSIIECYRDLPKLVSHLHLPIQSGSDRVLSAMKRGYTALEYKSIIRK 292

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R++RPD+ +SSDFIVGFPGET+ +F  T+ LV  I +  +F F YSPR GTP +N+ + 
Sbjct: 293 LRAIRPDLCLSSDFIVGFPGETEREFEQTLKLVKDIAFDLSFVFIYSPRPGTPAANLPDD 352

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSVVL 440
                K  RL  L + +  +    N   VG +   L+E    K+  +L  R+   + V  
Sbjct: 353 TPHEEKVRRLEALNEVIEAETARINQTMVGTVQRCLVEGISKKDPDQLQARTANNRVVNF 412

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 I  +I + IT+    +L G++V
Sbjct: 413 TGTPDMINQMIDLEITEAYTFSLRGKVV 440


>gi|169794647|ref|YP_001712440.1| putative tRNA-i(6)A37 modification enzyme (MiaB) [Acinetobacter
           baumannii AYE]
 gi|213157982|ref|YP_002320780.1| tRNA-i(6)A37 thiotransferase [Acinetobacter baumannii AB0057]
 gi|215482236|ref|YP_002324418.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Acinetobacter baumannii
           AB307-0294]
 gi|301345373|ref|ZP_07226114.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Acinetobacter
           baumannii AB056]
 gi|301511255|ref|ZP_07236492.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Acinetobacter
           baumannii AB058]
 gi|301595637|ref|ZP_07240645.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Acinetobacter
           baumannii AB059]
 gi|332855636|ref|ZP_08435979.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Acinetobacter baumannii
           6013150]
 gi|332868551|ref|ZP_08438217.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Acinetobacter baumannii
           6013113]
 gi|229890407|sp|B7GW55|MIAB_ACIB3 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|229890408|sp|B7I9D5|MIAB_ACIB5 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|229890411|sp|B0V6R4|MIAB_ACIBY RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|169147574|emb|CAM85435.1| putative tRNA-i(6)A37 modification enzyme (MiaB) [Acinetobacter
           baumannii AYE]
 gi|213057142|gb|ACJ42044.1| tRNA-i(6)A37 thiotransferase [Acinetobacter baumannii AB0057]
 gi|213987152|gb|ACJ57451.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Acinetobacter baumannii
           AB307-0294]
 gi|332727351|gb|EGJ58787.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Acinetobacter baumannii
           6013150]
 gi|332733321|gb|EGJ64514.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Acinetobacter baumannii
           6013113]
          Length = 483

 Score =  375 bits (963), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 198/455 (43%), Positives = 297/455 (65%), Gaps = 20/455 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ ++++ GCQMN YDS RM D+   S GY   N+ ++AD++++NTC IREKA EKV+S 
Sbjct: 31  KKLYIETQGCQMNEYDSHRMADLLGDSHGYVLTNNPNEADILLMNTCSIREKAQEKVFSE 90

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER- 142
           LGR R LK    ++  DL++ V GCVA  EG+ I +R+P V+++ GPQT +RLP++L++ 
Sbjct: 91  LGRWRKLK----EQNPDLVIGVGGCVASQEGDNIQKRAPYVDMIFGPQTLHRLPQMLDQH 146

Query: 143 -ARFGK------RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
            A+  K      ++VD  +   +KF+ L        R  G  AF++I EGC K+C+FCVV
Sbjct: 147 HAQVEKPKKEKIKLVDISFPDIEKFDFLP-----EPRVEGFKAFVSIMEGCSKYCSFCVV 201

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
           PYTRG E+SR L  V+ E   L + GV EI+LLGQNVN +RG+  +G  CTF +LL  ++
Sbjct: 202 PYTRGEEVSRPLDDVLAEIAGLAEKGVREISLLGQNVNGYRGETFEGGICTFPELLRLVA 261

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
           EI G+ RLRYTTSHP + SD LI+ + DL  ++ +LHLPVQSGS+ +LK+M R HT   Y
Sbjct: 262 EIPGIGRLRYTTSHPLEFSDELIQCYEDLPQMVSHLHLPVQSGSNDVLKAMKRNHTIDVY 321

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
              I ++R +RPD+ +SSDFI+GFPGETD++F  T+  +  + +  ++SF YS R GTP 
Sbjct: 322 IDKIAKLRKIRPDMHLSSDFIIGFPGETDENFAETLQFIKDLDFDHSYSFVYSKRPGTPA 381

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPW 434
           S++ +   E+VK ERL  +Q+ +++  +   DA +G+I  VLIEK   ++   LVG +  
Sbjct: 382 SDLPDTTPEHVKKERLAQVQQVIKQSSIEKTDAMLGKIERVLIEKVSDQDPNILVGTADN 441

Query: 435 LQSVVLNSKNHNIGDIIKVRITDVK-ISTLYGELV 468
            + V        +G   ++ IT++K ++ +YGEL+
Sbjct: 442 TRLVTFVGDASWVGRFAEIEITEIKTLNLVYGELL 476


>gi|113866557|ref|YP_725046.1| 2-methylthioadenine synthetase [Ralstonia eutropha H16]
 gi|123134407|sp|Q0KE93|MIAB_RALEH RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|113525333|emb|CAJ91678.1| 2-Methylthioadenine synthetase [Ralstonia eutropha H16]
          Length = 450

 Score =  375 bits (963), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 202/456 (44%), Positives = 290/456 (63%), Gaps = 20/456 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ FVK+YGCQMN YDS +M D+   SQG E  +++++AD+I+ NTC +REKA EKV+S 
Sbjct: 2   KKVFVKTYGCQMNEYDSDKMVDVLNASQGLEPTDNVEEADVILFNTCSVREKAQEKVFSE 61

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-ER 142
           LGR++ LK  +     DL++ V GCVA  EG  I+ R+P V+VV GPQT +RLP+L+  R
Sbjct: 62  LGRMKALKAVK----PDLVIGVGGCVASQEGASIVSRAPYVDVVFGPQTLHRLPDLIARR 117

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            R G+  VD  +   +KF+ L        R  G +AF++I EGC K+C++CVVPYTRG E
Sbjct: 118 QRTGQSQVDISFPEIEKFDHLPPA-----RVEGPSAFVSIMEGCSKYCSYCVVPYTRGEE 172

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-GLDGEKCTFSDLLYSLSEIKGLV 261
           +SR    V+ E   L + GV E+TLLGQNVNA+RGK G   E   F+ L+  ++EI G+ 
Sbjct: 173 VSRPFEDVLAEVAGLAEQGVREVTLLGQNVNAYRGKMGDTTEIADFALLIEYVAEIPGIE 232

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+RYTTSHP++ +  L++ +G  D L+ +LHLPVQ  SDRIL +M R ++  EY+ II +
Sbjct: 233 RIRYTTSHPKEFTSRLVELYGRCDKLVNHLHLPVQHASDRILMAMKRGYSVLEYKSIIRK 292

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R +RPD+++SSDFIVGFPGETD DF   M ++++IGY  +FSF +SPR GTP +N+ + 
Sbjct: 293 LRVLRPDMSMSSDFIVGFPGETDADFEKLMAMIEEIGYDTSFSFIFSPRPGTPAANLHDD 352

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSP------- 433
               VK  RL  LQ  + E     +   VG +  +L+E    K+  +L GR+        
Sbjct: 353 TPHEVKLRRLQRLQATIEENVQRISQNMVGTVQRILVEGPARKDPTELHGRTENNRVVNF 412

Query: 434 WLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
            L  V    ++  +G ++ V IT     +L GE+VV
Sbjct: 413 ALPGVPQAGRDRLVGQLVDVSITQAFPHSLRGEIVV 448


>gi|21108720|gb|AAM37312.1| conserved hypothetical protein [Xanthomonas axonopodis pv. citri
           str. 306]
          Length = 452

 Score =  375 bits (963), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 200/450 (44%), Positives = 288/450 (64%), Gaps = 17/450 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + ++K++GCQMN YDS +M D+   S+G E  +  ++AD++++NTC IREKA EKV+S L
Sbjct: 5   KLYIKTHGCQMNEYDSAKMADVLAASEGLELTDDPEEADVVLVNTCSIREKAQEKVFSQL 64

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE-RA 143
           GR + LK      G  +++ V GCVA  EGE I++R+P V++V GPQT +RLPEL+  R 
Sbjct: 65  GRWKALKAG----GKPVIIGVGGCVASQEGEAIVKRAPYVDLVFGPQTLHRLPELIRARR 120

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             GK  VD  +   +KF+RL        R  G +AF++I EGC K+C+FCVVPYTRG E+
Sbjct: 121 ESGKSQVDISFPEIEKFDRLP-----EPRAEGPSAFVSIMEGCSKYCSFCVVPYTRGEEV 175

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT--FSDL---LYSLSEIK 258
           SR    V+ E  +L   GV EI LLGQNVNA+RG           ++DL   + ++++I+
Sbjct: 176 SRPFEDVLVEVAQLAAQGVREINLLGQNVNAYRGAYGADAGDAAQYADLGLLIRTIAQIE 235

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           G+ R+R+TTSHP + SD L+ A+ D+  L  YLHLPVQ+GSDRIL +M R +TA E++  
Sbjct: 236 GIGRIRFTTSHPLEFSDSLVDAYRDVPQLANYLHLPVQAGSDRILSAMKRGYTALEFKSK 295

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           I ++R+VRPDI+ISSDFIVGFPGET+ DF  TM L++ +G+ Q+FSF YS R GTP S++
Sbjct: 296 IRKLRAVRPDISISSDFIVGFPGETEADFEKTMKLIEDVGFDQSFSFVYSRRPGTPASDL 355

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQS 437
            +   E VK  RL  LQ  +     S + + VG +  VL+E    ++  +L G+S  ++ 
Sbjct: 356 QDDTPEAVKQARLARLQAHINAHAASISQSMVGSVQRVLVEGPSRRDPNELTGKSENMRP 415

Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
           V        IG  + V IT+   ++L G +
Sbjct: 416 VNFPGNPRLIGQFVDVLITEAMSNSLRGRI 445


>gi|218767554|ref|YP_002342066.1| hypothetical protein NMA0590 [Neisseria meningitidis Z2491]
 gi|229890575|sp|A1IQ34|MIAB_NEIMA RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|121051562|emb|CAM07860.1| hypothetical protein NMA0590 [Neisseria meningitidis Z2491]
          Length = 442

 Score =  375 bits (963), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 195/448 (43%), Positives = 282/448 (62%), Gaps = 13/448 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQ--GYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           ++ F++++GCQMN YDS +M  +   +  G E+V   D+AD+I+ NTC +REKA EKV+S
Sbjct: 2   KKVFIRTFGCQMNEYDSDKMLAVLAEEHGGIEQVTQADEADIILFNTCSVREKAQEKVFS 61

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-E 141
            LGR+R LK  +      L++ VAGCVA  EGE I++R+P V+VV GPQT +RLP+++ +
Sbjct: 62  DLGRVRPLKEKK----PGLIIGVAGCVASQEGENIIKRAPYVDVVFGPQTLHRLPKMIVD 117

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           +   G   VD  +   +KF+ L        R  G  AF++I EGC K+C+FCVVPYTRG 
Sbjct: 118 KETSGLSQVDISFPEIEKFDHLPPA-----RVEGGAAFVSIMEGCSKYCSFCVVPYTRGE 172

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR L+ V+ E   L   GV EI LLGQNVNA+RG+  DGE C F+ LL  + EI G+ 
Sbjct: 173 EFSRPLNDVLTEIANLAQQGVKEINLLGQNVNAYRGEMDDGEICDFATLLRIVHEIPGIE 232

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHPR+ +D +I+ + DL  L+ +LHLP+QSGSDR+L +M R +TA EY+ II +
Sbjct: 233 RMRFTTSHPREFTDSIIECYRDLPKLVSHLHLPIQSGSDRVLSAMKRGYTALEYKSIIRK 292

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R++RPD+ +SSDFIVGFPGET+ +F  T+ LV  I +  +F F YSPR GTP +N+ + 
Sbjct: 293 LRAIRPDLCLSSDFIVGFPGETEREFEQTLKLVKDIAFDLSFVFIYSPRPGTPAANLHDD 352

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSVVL 440
                K  RL  L + +  +    N   +G +   L+E    K+  +L  R+   + V  
Sbjct: 353 TPHEEKVRRLEALNEVIEAETARINQTMIGTVQRCLVEGISKKDPDQLQARTANNRVVNF 412

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 I  +I + IT+    +L G++V
Sbjct: 413 TGTPDMINQMIDLEITEAYTFSLRGKIV 440


>gi|59800506|ref|YP_207218.1| hypothetical protein NGO0037 [Neisseria gonorrhoeae FA 1090]
 gi|75356482|sp|Q5FAI1|MIAB_NEIG1 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|59717401|gb|AAW88806.1| conserved hypothetical protein [Neisseria gonorrhoeae FA 1090]
          Length = 442

 Score =  375 bits (963), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 195/448 (43%), Positives = 283/448 (63%), Gaps = 13/448 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQ--GYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           ++ F++++GCQMN YDS +M  +   +  G E+V   D+AD+I+ NTC +REKA EKV+S
Sbjct: 2   KKVFIRTFGCQMNEYDSEKMLSVLAEEHGGIEQVTQADEADIILFNTCSVREKAQEKVFS 61

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-E 141
            LGR+R LK    ++   L++ VAGCVA  EGE I++R+P V+VV GPQT +RLP+++ +
Sbjct: 62  DLGRVRPLK----EKNPGLIIGVAGCVASQEGENIIKRAPYVDVVFGPQTLHRLPKMIVD 117

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           +   G   VD  +   +KF+ L        R  G  AF++I EGC K+C+FCVVPYTRG 
Sbjct: 118 KETSGLSQVDISFPEIEKFDHLPPA-----RVEGGAAFVSIMEGCSKYCSFCVVPYTRGE 172

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR L+ V+ E   L   GV EI LLGQNVNA+RG+  DGE C F+ LL  + EI G+ 
Sbjct: 173 EFSRPLNDVLTEIANLAQQGVKEINLLGQNVNAYRGEMDDGEICDFATLLRIVHEIPGIE 232

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHPR+ +D +I+ + DL  L+ +LHLP+QSGSDR+L +M R +TA EY+ II +
Sbjct: 233 RMRFTTSHPREFTDSIIECYRDLPKLVSHLHLPIQSGSDRVLSAMKRGYTALEYKSIIRK 292

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R++RPD+ +SSDFIVGFPGET+ +F  T+ LV  I +  +F F YSPR GTP +N+ + 
Sbjct: 293 LRAIRPDLCLSSDFIVGFPGETEREFEQTLKLVKDIAFDLSFVFIYSPRPGTPAANLPDD 352

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSVVL 440
                K  RL  L + +  +    N   +G +   L+E    K+  +L  R+   + V  
Sbjct: 353 TPHEEKVRRLEALNEVIEAETARINQTMIGTVQRCLVEGISKKDPDQLQARTVNNRVVNF 412

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 I  +I + IT+    +L G++V
Sbjct: 413 TGTPDMINQMIDLEITEAYTFSLRGKIV 440


>gi|167561620|ref|ZP_02354536.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia oklahomensis
           EO147]
 gi|167568856|ref|ZP_02361730.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia oklahomensis
           C6786]
          Length = 457

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 198/454 (43%), Positives = 292/454 (64%), Gaps = 18/454 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ +VK++GCQMN YDS +M D+   S+G E+ +S +DAD+I+ NTC +REKA EKV+S 
Sbjct: 3   KKVYVKTFGCQMNEYDSDKMVDVLNASEGLEKTDSPEDADIILFNTCSVREKAQEKVFSD 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR+R LK ++     DLL+ V GCVA  EG  I+ R+P V++V GPQT +RLP++++  
Sbjct: 63  LGRVRELKEAK----PDLLIGVGGCVASQEGASIVARAPYVDLVFGPQTLHRLPQMIDAR 118

Query: 144 RF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           R  G+  VD  +   +KF+ L        R  G +AF++I EGC K+C++CVVPYTRG E
Sbjct: 119 RASGRAQVDITFPEIEKFDHLPPA-----RVEGPSAFVSIMEGCSKYCSYCVVPYTRGDE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK--CTFSDLLYSLSEIKGL 260
           +SR L  V+ E   L D GV E+TLLGQNVNA+RG    G      F+ L+  +++I G+
Sbjct: 174 VSRPLDDVLTEIAGLADQGVREVTLLGQNVNAYRGALTAGASDIADFATLIEYVADIPGI 233

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+RYTTSHP++ +  L+  +  +  L+ +LHLPVQ GSDRIL +M R +T  EY+ +I 
Sbjct: 234 ERIRYTTSHPKEFTQRLLDVYAKVPKLVDHLHLPVQHGSDRILMAMKRGYTVLEYKSVIR 293

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R++RP++++S+D IVGFPGET+ DF  TM LV ++ Y  +FSF YSPR GTP +N+ +
Sbjct: 294 KLRAIRPNLSLSTDIIVGFPGETEADFDKTMALVHEMSYDTSFSFIYSPRPGTPAANLAD 353

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSV- 438
                +K +RL  LQ  + E  V  + + VG++  +L+E    K+  +L GR+   + V 
Sbjct: 354 DTPRELKLKRLQHLQATIEENVVRISRSMVGKVERILVEGPSRKDPNELAGRTENNRVVN 413

Query: 439 ---VLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
               L S    IG +I V+I      +L GELV+
Sbjct: 414 FPAPLASHPRLIGQMIDVKINHAYPHSLRGELVL 447


>gi|319409818|emb|CBY90126.1| putative MiaB-like tRNA modification enzyme [Neisseria meningitidis
           WUE 2594]
 gi|325129521|gb|EGC52348.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Neisseria meningitidis
           OX99.30304]
 gi|325135644|gb|EGC58261.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Neisseria meningitidis
           M0579]
 gi|325141561|gb|EGC64027.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Neisseria meningitidis
           961-5945]
 gi|325197636|gb|ADY93092.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Neisseria meningitidis
           G2136]
 gi|325206777|gb|ADZ02230.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Neisseria meningitidis
           M04-240196]
          Length = 442

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 195/448 (43%), Positives = 283/448 (63%), Gaps = 13/448 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQ--GYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           ++ F++++GCQMN YDS +M  +   +  G E+V   D+AD+I+ NTC +REKA EKV+S
Sbjct: 2   KKVFIRTFGCQMNEYDSDKMLAVLAEEHGGIEQVTQADEADIILFNTCSVREKAQEKVFS 61

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-E 141
            LGR+R LK    ++   L++ VAGCVA  EGE I++R+P V+VV GPQT +RLP+++ +
Sbjct: 62  DLGRVRPLK----EKNPGLIIGVAGCVASQEGENIIKRAPYVDVVFGPQTLHRLPKMIVD 117

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           +   G   VD  +   +KF+ L        R  G  AF++I EGC K+C+FCVVPYTRG 
Sbjct: 118 KETSGLSQVDISFPEIEKFDHLPPA-----RVEGGAAFVSIMEGCSKYCSFCVVPYTRGE 172

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR L+ V+ E   L   GV EI LLGQNVNA+RG+  DGE C F+ LL  + EI G+ 
Sbjct: 173 EFSRPLNDVLTEIANLAQQGVKEINLLGQNVNAYRGEMDDGEICDFATLLRIVHEIPGIE 232

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHPR+ +D +I+ + DL  L+ +LHLP+QSGSDR+L +M R +TA EY+ II +
Sbjct: 233 RMRFTTSHPREFTDSIIECYRDLPKLVSHLHLPIQSGSDRVLSAMKRGYTALEYKSIIRK 292

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R++RPD+ +SSDFIVGFPGET+ +F  T+ LV  I +  +F F YSPR GTP +N+ + 
Sbjct: 293 LRAIRPDLCLSSDFIVGFPGETEREFEQTLKLVKDIAFDLSFVFIYSPRPGTPAANLHDD 352

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSVVL 440
                K  RL  L + +  +    N   +G +   L+E    K+  +L  R+   + V  
Sbjct: 353 TPHEEKVRRLEALNEVIEAETARINQTMIGTVQRCLVEGISKKDPDQLQARTANNRVVNF 412

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 I  +I + IT+    +L G++V
Sbjct: 413 TGTPDMINQMIDLEITEAYTFSLRGKIV 440


>gi|157376603|ref|YP_001475203.1| 2-alkenal reductase [Shewanella sediminis HAW-EB3]
 gi|229890656|sp|A8FZ02|MIAB_SHESH RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|157318977|gb|ABV38075.1| 2-alkenal reductase [Shewanella sediminis HAW-EB3]
          Length = 474

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 196/447 (43%), Positives = 283/447 (63%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS +M D+    +GY       +AD+++LNTC IREKA EKV+  
Sbjct: 3   KKLHIKTWGCQMNEYDSSKMADLMDEYEGYTLTEEASEADVLLLNTCSIREKAQEKVFHQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK    ++  DL++ V GCVA  EG+ I  R+  V+++ GPQT +RLPE++++ 
Sbjct: 63  LGRWKKLK----EKNPDLIIGVGGCVASQEGKVIKERAQCVDLIFGPQTLHRLPEMIDQI 118

Query: 144 R-FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           R  GK V+D  +   +KF++L        R  G +AF++I EGC K+C+FCVVPYTRG E
Sbjct: 119 RDGGKAVIDISFPEIEKFDKLP-----EPRADGPSAFVSIMEGCSKYCSFCVVPYTRGEE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR L  ++ E  +L D GV E+ LLGQNVNA+RG   D E CTF++LL  ++ I G+ R
Sbjct: 174 VSRPLDDIILEIAQLADQGVREVNLLGQNVNAYRGATHDDEICTFAELLRYVAAIDGIDR 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LR+TTSHP + +  +I  + D   L+ +LHLPVQSGSDRIL  M R H A EY+ II R+
Sbjct: 234 LRFTTSHPIEFTQDIIDVYEDTPELVSFLHLPVQSGSDRILTQMKRGHMAIEYKSIIRRL 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R  RPDI ISSDFI+GFPGE+  DF  TM L++ + +  +FSF YS R GTP +++ + V
Sbjct: 294 RKARPDIQISSDFIIGFPGESKQDFADTMKLIEDVQFDHSFSFIYSARPGTPAADLPDDV 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLN 441
               K ERL  LQ ++ +Q + ++   +G +  +L+E    K   +L GR+   + V   
Sbjct: 354 TLAEKKERLAILQDRITQQAMRYSRQMLGTVQRILVEGPSVKNPMELRGRTETSRVVNFE 413

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
           +   +IG  + V I DV  ++L G  V
Sbjct: 414 ADPKHIGSFVDVEIVDVYTNSLRGTFV 440


>gi|307130060|ref|YP_003882076.1| isopentenyl-adenosine A37 tRNA methylthiolase [Dickeya dadantii
           3937]
 gi|306527589|gb|ADM97519.1| isopentenyl-adenosine A37 tRNA methylthiolase [Dickeya dadantii
           3937]
          Length = 474

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 196/448 (43%), Positives = 288/448 (64%), Gaps = 14/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS ++ D+  S  GY+     ++AD+++LNTC IREKA EKV+  
Sbjct: 3   KKLHIKTWGCQMNEYDSSKIADLLESTHGYQLTEVAEEADILLLNTCSIREKAQEKVFHQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK+       +L++ V GCVA  EGE I  R+  V+V+ GPQT +RLPE++   
Sbjct: 63  LGRWKTLKDV----NPNLIIGVGGCVASQEGEHIRDRAHYVDVIFGPQTLHRLPEMINHV 118

Query: 144 RFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           + G R  +VD  +   +KF+RL        R  G TAF++I EGC+K+CTFCVVPYTRG 
Sbjct: 119 Q-GTRSPIVDISFPEVEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTFCVVPYTRGE 172

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E+SR +  V+ E  +L   GV E+ LLGQNVNA+RG   + + C+F++LL  ++ I G+ 
Sbjct: 173 EVSRPVDDVLFEIAQLAAQGVREVNLLGQNVNAYRGATHNDDICSFAELLRLVATIDGID 232

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+ TSHP + +D +I  + D   L+ +LHLPVQSGSDR+L  M RRHTA EY+ II +
Sbjct: 233 RIRFITSHPIEFTDDIISVYEDTPELVSFLHLPVQSGSDRVLTMMKRRHTALEYKAIIRK 292

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R+ RP I ISSDFIVGFPGET +DF  TM L+  + +  +FSF YSPR GTP ++M++ 
Sbjct: 293 LRNARPAIQISSDFIVGFPGETQEDFEQTMKLIADVDFDMSFSFIYSPRPGTPAADMVDD 352

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVL 440
           V E  K +RL  LQ+++ +Q + ++   +G +  +L+E   ++   +L GR+   + V  
Sbjct: 353 VTEAEKKQRLYILQERINQQAMQYSRRMMGSVQRILVEGTSRKSVMELSGRTENNRVVNF 412

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 IG  + V I DV  ++L G +V
Sbjct: 413 EGTPDMIGKFVDVEIVDVYPNSLRGVVV 440


>gi|126175461|ref|YP_001051610.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Shewanella
           baltica OS155]
 gi|229890648|sp|A3D7M8|MIAB_SHEB5 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|125998666|gb|ABN62741.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Shewanella baltica OS155]
          Length = 474

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 195/447 (43%), Positives = 284/447 (63%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS +M D+    QGY       +AD+++LNTC IREKA EKV+  
Sbjct: 3   KKLHIKTWGCQMNEYDSSKMADLLGEYQGYTLTEEASEADILLLNTCSIREKAQEKVFHQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK+    +  +L++ V GCVA  EG+ I  R+  V+++ GPQT +RLPE++E+ 
Sbjct: 63  LGRWKTLKD----KNPNLIIGVGGCVASQEGKAIKDRAQCVDIIFGPQTLHRLPEMIEQV 118

Query: 144 RFG-KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           R G K V+D  +   +KF+RL        R  G TAF++I EGC K+C+FCVVPYTRG E
Sbjct: 119 RRGEKAVIDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCSKYCSFCVVPYTRGEE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR    ++ E  +L + GV E+ LLGQNVNA+RG   DG  CTF++LL  ++ I G+ R
Sbjct: 174 VSRPSDDIILEIAQLAEQGVREVNLLGQNVNAYRGATHDGAICTFAELLRFVAAIDGIDR 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP + +  +I  + D   L+ +LHLPVQSGSDRIL +M R H A EY+ II R+
Sbjct: 234 IRFTTSHPIEFTQDIIDVYEDTPELVSFLHLPVQSGSDRILTAMKRGHMAIEYKSIIRRL 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R  R  I ISSDFI+GFPGET +DF  T+ L++ IG+  +FSF YS R GTP +++ + V
Sbjct: 294 RKAREGIQISSDFIIGFPGETKEDFADTIKLIEDIGFDHSFSFIYSARPGTPAADLPDNV 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLN 441
           D   K +RL  LQ ++ +Q + ++   +G +  +L+E    K   +L GR+   + V   
Sbjct: 354 DMEEKKQRLAILQDRITQQAMRYSRHMMGTVQRILVEGPSVKNPMELRGRTENNRVVNFE 413

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
            +  +IG  + V I DV  ++L G  +
Sbjct: 414 GQPKHIGTFVDVEIVDVYTNSLRGVFI 440


>gi|328472484|gb|EGF43347.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Vibrio
           parahaemolyticus 10329]
          Length = 474

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 202/447 (45%), Positives = 289/447 (64%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS +M D+   + GYE     ++AD+++LNTC IREKA EKV+  
Sbjct: 3   KKLLIKTWGCQMNEYDSSKMADLLNAANGYELTEEPEEADVLLLNTCSIREKAQEKVFHQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK+ +      +++ V GCVA  EG+ I  R+P V+V+ GPQT +RLPE+++++
Sbjct: 63  LGRWKTLKDKK----PGVVIGVGGCVATQEGDHIRERAPYVDVIFGPQTLHRLPEMIKQS 118

Query: 144 RFG-KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           +     V+D  +   +KF+RL        R  G TAF++I EGC K+CT+CVVPYTRG E
Sbjct: 119 QTDDAPVMDISFPEIEKFDRLP-----EPRAEGATAFVSIMEGCSKYCTYCVVPYTRGEE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR +  V+ E  +L + GV E+ LLGQNVNA+RG   DGE C+F++LL  ++ I G+ R
Sbjct: 174 VSRPMDDVLFEIAQLAEQGVREVNLLGQNVNAYRGPMHDGEICSFAELLRLVASIDGIDR 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP + +D +I  + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II ++
Sbjct: 234 IRFTTSHPLEFTDDIIAVYEDTPELVSFLHLPVQSGSDRILTMMKRPHTAIEYKSIIRKL 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R  RPDI ISSDFIVGFPGETD DF+ TM L+  + +  +FSF +SPR GTP ++    +
Sbjct: 294 RKARPDIQISSDFIVGFPGETDKDFQDTMKLIKDVDFDMSFSFIFSPRPGTPAADYPCDI 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441
            E VK ERL  LQ+ +  Q + ++   +G    VL+E   K+   +L  R+   + V   
Sbjct: 354 PEQVKKERLYELQQTINAQAMRYSRLMLGTEQRVLVEGPSKKNLMELRARTENNRVVNFE 413

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                IG  + V+ITDV  ++L GELV
Sbjct: 414 GSADLIGQFVDVKITDVFANSLRGELV 440


>gi|120555649|ref|YP_960000.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Marinobacter aquaeolei
           VT8]
 gi|229890561|sp|A1U494|MIAB_MARAV RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|120325498|gb|ABM19813.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Marinobacter aquaeolei
           VT8]
          Length = 448

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 197/449 (43%), Positives = 289/449 (64%), Gaps = 19/449 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ ++K++GCQMN YDS RM D+  + +  E  ++ DDAD+++LNTC IREKA EKV+  
Sbjct: 3   KKLYIKTHGCQMNEYDSARMADLLKTGEAVEVTDNADDADILLLNTCSIREKAQEKVFHQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR ++LK  +     DL++ V GCVA  EG+ I+ R+P V++V GPQT +RLP+++   
Sbjct: 63  LGRWKSLKTKK----PDLIIGVGGCVASQEGQAIIDRAPYVDMVFGPQTLHRLPDMITEV 118

Query: 144 RF---GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           R    G  VVD  +   +KF+ L   + G +   G +AF++I EGC K+CTFCVVPYTRG
Sbjct: 119 RTKGNGVGVVDVSFPEIEKFDNLP--EPGAD---GPSAFVSIMEGCSKYCTFCVVPYTRG 173

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR +  V+ E   L   GV E+ LLGQNVNA+RG+  DG++   ++L+  ++ I G+
Sbjct: 174 EEVSRPVDDVIAEVAHLAAQGVREVNLLGQNVNAYRGETHDGDQMDLAELIEVIATIDGI 233

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+RYTTSHP + SD LI+ +  +  L+ +LHLPVQSGSDRIL +M R HTA EY+  + 
Sbjct: 234 DRIRYTTSHPVEFSDALIEVYERVPELVSHLHLPVQSGSDRILAAMKRGHTALEYKSKLR 293

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           R+R +RPDI+ SSDFI+GFPGETD DF  TM L++ IG+  +FSF YS R GTP S++ +
Sbjct: 294 RLRKIRPDISFSSDFIIGFPGETDKDFEDTMKLINDIGFDMSFSFIYSARPGTPASDLPD 353

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSVV 439
                VK +RL  LQ +L +  +  +   VG    +L+     K+ G+  GR+    + +
Sbjct: 354 DTPMEVKKQRLSILQDRLNQNVMDISRKMVGSTQRILVTGLSKKDPGEYAGRTE--NNRI 411

Query: 440 LNSKNHN---IGDIIKVRITDVKISTLYG 465
           +N ++ N   +G  I V I +   ++L G
Sbjct: 412 VNFRHENPEVVGHFIDVEIVEAYPNSLRG 440


>gi|331014759|gb|EGH94815.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Pseudomonas
           syringae pv. lachrymans str. M302278PT]
          Length = 442

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 198/448 (44%), Positives = 282/448 (62%), Gaps = 13/448 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ +++++GCQMN YDS RM D+    Q  E     +DAD+I+LNTC IRE+A ++VYS 
Sbjct: 3   KKLYIETHGCQMNEYDSSRMVDLLGEHQALEVTARAEDADVILLNTCSIRERAQDRVYSQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR R LK +      ++++ V GCVA  EG  I  R+P V+VV GPQT +RLPE+++ A
Sbjct: 63  LGRWRELKLA----NPEMVIAVGGCVASQEGAAIRDRAPYVDVVFGPQTLHRLPEMIDAA 118

Query: 144 RFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           R  +   VD  +   +KF+ L        R  G +A++++ EGC K+CTFCVVPYTRG E
Sbjct: 119 RITRLPQVDVSFPEIEKFDHLP-----EPRVDGPSAYVSVMEGCSKYCTFCVVPYTRGEE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR    V+ E   L ++GV E+TLLGQNVN +R    DG     +DL+ +++ + G+ R
Sbjct: 174 VSRPFDDVLTEVTHLAEHGVREVTLLGQNVNGYRCTTHDGRVADLADLIRAVAVVDGIDR 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +RYTTSHP + SD LI+AH D+  L+ +LHLPVQSGSDRIL +M R HT  EY+  + ++
Sbjct: 234 IRYTTSHPLEFSDSLIQAHADVPELVKHLHLPVQSGSDRILAAMKRNHTTLEYKSRLRKL 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+  P I+ISSDFIVGFPGET+ DF  TM L++  G+  +FSF YSPR GTP +++ +  
Sbjct: 294 RAAVPGISISSDFIVGFPGETEKDFDNTMKLIEDAGFDFSFSFIYSPRPGTPAADLKDDT 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLN 441
            E +K ERL  LQ +L +Q    +   VG I  +L+  +  K+ G+L GR+   + V   
Sbjct: 354 PEALKKERLAALQHRLNQQGFEISRQMVGSIQRILVTDYSKKDPGELQGRTENNRIVNFR 413

Query: 442 SKNHN-IGDIIKVRITDVKISTLYGELV 468
             N   IG    V I D +  +L G L+
Sbjct: 414 CDNPRLIGQFADVHIDDAQPHSLRGSLL 441


>gi|295096597|emb|CBK85687.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Enterobacter cloacae
           subsp. cloacae NCTC 9394]
          Length = 474

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 193/448 (43%), Positives = 289/448 (64%), Gaps = 14/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS +M D+   + GY+   +  +AD+++LNTC IREKA EKV+  
Sbjct: 3   KKLHIKTWGCQMNEYDSSKMADLLDTTHGYQLTENAKEADVLLLNTCSIREKAQEKVFHV 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK    ++  DL++ V GCVA  EG+ I +R+P V++V GPQT +RLPE++ + 
Sbjct: 63  LGRWKLLK----RKNPDLIIGVGGCVASQEGKLIRQRAPYVDIVFGPQTLHRLPEMINQV 118

Query: 144 RFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           R G R  VVD  +   +KF+RL        R  G TAF++I EGC+K+CT+CVVPYTRG 
Sbjct: 119 R-GSRSPVVDVSFPEIEKFDRLP-----EPRADGPTAFVSIMEGCNKYCTYCVVPYTRGE 172

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E+SR    ++ E  +L   GV E+ LLGQNVNAWRG+  DG   +F++LL  ++ I G+ 
Sbjct: 173 EVSRPADDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTTGSFAELLRLVAAIDGID 232

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHP + +D +I  + D   L+ +LHLP+Q GSDR+L  M R HT  EY+  I +
Sbjct: 233 RIRFTTSHPMEFTDDIIDVYRDTPELVSFLHLPIQCGSDRVLNLMGRPHTVLEYKSTIRK 292

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R  RPDI ISSDFIVGFPGET DDF  TM L+ ++ +  ++SF +S R GTP ++M++ 
Sbjct: 293 LREARPDIQISSDFIVGFPGETADDFERTMKLIGEVNFDVSYSFIFSARPGTPAADMVDD 352

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVL 440
           V E  K +RL  LQ+++ +Q  +++   +G +  +L+E   ++   +L GR+   + V  
Sbjct: 353 VPEEEKKQRLYILQERINQQANAWSRRMLGTVQRILVEGTSRKSVMELSGRTENNRVVNF 412

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 IG  + V I +V  ++L G++V
Sbjct: 413 EGTPDMIGKFVDVEIVEVLTNSLRGKVV 440


>gi|254804310|ref|YP_003082531.1| putative 2-methylthioadenine synthetase [Neisseria meningitidis
           alpha14]
 gi|254667852|emb|CBA03889.1| putative 2-methylthioadenine synthetase [Neisseria meningitidis
           alpha14]
 gi|325131508|gb|EGC54215.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Neisseria meningitidis
           M6190]
 gi|325139238|gb|EGC61784.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Neisseria meningitidis
           ES14902]
          Length = 442

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 195/448 (43%), Positives = 283/448 (63%), Gaps = 13/448 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQ--GYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           ++ F++++GCQMN YDS +M  +   +  G E+V   D+AD+I+ NTC +REKA EKV+S
Sbjct: 2   KKVFIRTFGCQMNEYDSDKMLAVLAEEHGGIEQVTQADEADIILFNTCSVREKAQEKVFS 61

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-E 141
            LGR+R LK    ++   L++ VAGCVA  EGE I++R+P V+VV GPQT +RLP+++ +
Sbjct: 62  DLGRVRPLK----EKNPGLIIGVAGCVASQEGENIIKRAPYVDVVFGPQTLHRLPKMIVD 117

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           +   G   VD  +   +KF+ L        R  G  AF++I EGC K+C+FCVVPYTRG 
Sbjct: 118 KETSGLSQVDISFPEIEKFDHLPPA-----RVEGGAAFVSIMEGCSKYCSFCVVPYTRGE 172

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR L+ V+ E   L   GV EI LLGQNVNA+RG+  DGE C F+ LL  + EI G+ 
Sbjct: 173 EFSRPLNDVLTEIANLAQQGVKEINLLGQNVNAYRGEMDDGEICDFATLLRIVHEIPGIE 232

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHPR+ +D +I+ + DL  L+ +LHLP+QSGSDR+L +M R +TA EY+ II +
Sbjct: 233 RMRFTTSHPREFTDSIIECYRDLPKLVSHLHLPIQSGSDRVLSAMKRGYTALEYKSIIRK 292

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R++RPD+ +SSDFIVGFPGET+ +F  T+ LV  I +  +F F YSPR GTP +N+ + 
Sbjct: 293 LRAIRPDLCLSSDFIVGFPGETEREFEQTLKLVKDIAFDLSFVFIYSPRPGTPAANLPDD 352

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSVVL 440
                K  RL  L + +  +    N   +G +   L+E    K+  +L  R+   + V  
Sbjct: 353 TPHEEKVRRLEALNEVIEAETARINQTMIGTVQRCLVEGISKKDPDQLQARTANNRVVNF 412

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 I  +I + IT+    +L G++V
Sbjct: 413 TGTPDMINQMIDLEITEAYTFSLRGKVV 440


>gi|154706007|ref|YP_001424838.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Coxiella
           burnetii Dugway 5J108-111]
 gi|229890504|sp|A9KCP2|MIAB_COXBN RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|154355293|gb|ABS76755.1| tRNA 2-methylthioadenosine synthase [Coxiella burnetii Dugway
           5J108-111]
          Length = 439

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 197/446 (44%), Positives = 281/446 (63%), Gaps = 12/446 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ ++K++GCQMN YDS +M D+  FS G E       AD+ +LNTC +REKA  KV+S 
Sbjct: 2   KKLYLKTHGCQMNEYDSAKMADVLKFSHGLELTEDPAVADVFLLNTCSVREKAQTKVFSE 61

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR R  K  R      +++ V GCVA  EGE IL+++P V++V GPQT +RLP+LL+  
Sbjct: 62  LGRWRPFKEKR----PHVVIGVGGCVASQEGETILKQAPFVDIVFGPQTLHRLPDLLDSV 117

Query: 144 -RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            +  K VVD  +   +KF+RL        R  G +AF++I EGC K+CTFCVVPYTRG E
Sbjct: 118 IQKRKSVVDITFPEIEKFDRLP-----QPRAEGPSAFVSIMEGCSKYCTFCVVPYTRGEE 172

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           ISR    V+ E   L + GV EITLLGQNVN + G   DG+    + L++ L+ +  + R
Sbjct: 173 ISRPFDDVIAEVASLCEQGVREITLLGQNVNDYCGLMHDGQVADLALLIHYLAAMDNIER 232

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP   S+ LI A+ +   L  +LHLPVQSGSDRIL +M R +T  EY+  I ++
Sbjct: 233 IRFTTSHPSAFSENLIDAYAEEPKLANHLHLPVQSGSDRILAAMKRNYTVLEYKSKIRKL 292

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+VRPDI++SSDFI+GFPGETD DF ATM+L+  +G+  +FSF YSPR GTP + + + V
Sbjct: 293 RAVRPDISLSSDFIIGFPGETDADFEATMNLIHDMGFDHSFSFIYSPRPGTPAAQLPDDV 352

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRSPWLQSVVLN 441
              VK ERL  LQ ++  +    + + VG    +L+    K+   +L GR+   + V  N
Sbjct: 353 PMAVKKERLAILQNRINVKAAEISQSMVGTQQRILVTGPSKKYPDQLSGRTENNRVVNFN 412

Query: 442 SKNHNIGDIIKVRITDVKISTLYGEL 467
                IG ++ ++I + +  +L+GE+
Sbjct: 413 GDTPLIGQMVTIKIKEARPYSLWGEI 438


>gi|217972293|ref|YP_002357044.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Shewanella
           baltica OS223]
 gi|217497428|gb|ACK45621.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Shewanella baltica OS223]
          Length = 474

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 196/447 (43%), Positives = 283/447 (63%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS +M D+    QGY       +AD+++LNTC IREKA EKV+  
Sbjct: 3   KKLHIKTWGCQMNEYDSSKMADLLGEYQGYTLTEEASEADILLLNTCSIREKAQEKVFHQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK+    +  +L++ V GCVA  EG+ I  R+  V+++ GPQT +RLPE++E+ 
Sbjct: 63  LGRWKTLKD----KNPNLIIGVGGCVASQEGKAIKDRAQCVDIIFGPQTLHRLPEMIEQV 118

Query: 144 RFG-KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           R G K V+D  +   +KF+RL        R  G TAF++I EGC K+C+FCVVPYTRG E
Sbjct: 119 RRGDKAVIDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCSKYCSFCVVPYTRGEE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR    ++ E  +L + GV E+ LLGQNVNA+RG   DG  CTF++LL  ++ I G+ R
Sbjct: 174 VSRPSDDIILEIAQLAEQGVREVNLLGQNVNAYRGATHDGAICTFAELLRFVAAIDGIDR 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP + +  +I  + D   L+ +LHLPVQSGSDRIL +M R H A EY+ II R+
Sbjct: 234 IRFTTSHPIEFTQDIIDVYEDTPELVSFLHLPVQSGSDRILTAMKRGHMAIEYKSIIRRL 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R  R  I ISSDFI+GFPGET +DF  TM L++ IG+  +FSF YS R GTP +++ + V
Sbjct: 294 RKAREGIQISSDFIIGFPGETKEDFADTMKLIEDIGFDHSFSFIYSARPGTPAADLPDNV 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLN 441
           D   K +RL  LQ ++ +Q + ++   +G +  +L+E    K   +L GR+   + V   
Sbjct: 354 DMEEKKQRLAILQDRITQQAMRYSRHMMGTVQRILVEGPSVKNPMELRGRTENNRVVNFE 413

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
               +IG  + V I DV  ++L G  +
Sbjct: 414 GLPKHIGTFVDVEIVDVYTNSLRGVFI 440


>gi|121634220|ref|YP_974465.1| hypothetical protein NMC0353 [Neisseria meningitidis FAM18]
 gi|229890576|sp|A1KS33|MIAB_NEIMF RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|120865926|emb|CAM09663.1| hypothetical protein NMC0353 [Neisseria meningitidis FAM18]
 gi|254672658|emb|CBA06484.1| conserved hypothetical protein [Neisseria meningitidis alpha275]
 gi|261393205|emb|CAX50824.1| putative MiaB-like tRNA modification enzyme [Neisseria meningitidis
           8013]
 gi|308389965|gb|ADO32285.1| hypothetical protein NMBB_2129 [Neisseria meningitidis alpha710]
 gi|325204821|gb|ADZ00275.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Neisseria meningitidis
           M01-240355]
          Length = 442

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 195/448 (43%), Positives = 283/448 (63%), Gaps = 13/448 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQ--GYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           ++ F++++GCQMN YDS +M  +   +  G E+V   D+AD+I+ NTC +REKA EKV+S
Sbjct: 2   KKVFIRTFGCQMNEYDSDKMLAVLAEEHGGIEQVTQADEADIILFNTCSVREKAQEKVFS 61

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-E 141
            LGR+R LK    ++   L++ VAGCVA  EGE I++R+P V+VV GPQT +RLP+++ +
Sbjct: 62  DLGRVRPLK----EKNPGLIIGVAGCVASQEGENIIKRAPYVDVVFGPQTLHRLPKMIVD 117

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           +   G   VD  +   +KF+ L        R  G  AF++I EGC K+C+FCVVPYTRG 
Sbjct: 118 KETSGLSQVDISFPEIEKFDHLPPA-----RVEGGAAFVSIMEGCSKYCSFCVVPYTRGE 172

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR L+ V+ E   L   GV EI LLGQNVNA+RG+  DGE C F+ LL  + EI G+ 
Sbjct: 173 EFSRPLNDVLTEIANLAQQGVKEINLLGQNVNAYRGEMDDGEICDFATLLRIVHEIPGIE 232

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHPR+ +D +I+ + DL  L+ +LHLP+QSGSDR+L +M R +TA EY+ II +
Sbjct: 233 RMRFTTSHPREFTDSIIECYRDLPKLVSHLHLPIQSGSDRVLSAMKRGYTALEYKSIIRK 292

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R++RPD+ +SSDFIVGFPGET+ +F  T+ LV  I +  +F F YSPR GTP +N+ + 
Sbjct: 293 LRAIRPDLCLSSDFIVGFPGETEREFEQTLKLVKDIAFDLSFVFIYSPRPGTPAANLHDD 352

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSVVL 440
                K  RL  L + +  +    N   +G +   L+E    K+  +L  R+   + V  
Sbjct: 353 TPHEEKVRRLEALNEVIEAETARINQTMIGTVQRCLVEGISKKDPDQLQARTANNRVVNF 412

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 I  +I + IT+    +L G++V
Sbjct: 413 TGTPDMINQMIDLEITEAYTFSLRGKVV 440


>gi|221211289|ref|ZP_03584268.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia multivorans
           CGD1]
 gi|221168650|gb|EEE01118.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia multivorans
           CGD1]
          Length = 457

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 198/454 (43%), Positives = 291/454 (64%), Gaps = 18/454 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ +VK++GCQMN YDS +M D+   ++G E+ +S +DAD+I+ NTC +REKA EKV+S 
Sbjct: 3   KKVYVKTFGCQMNEYDSDKMVDVLNAAEGLEKTDSPEDADIILFNTCSVREKAQEKVFSD 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR+R LK ++     DLL+ V GCVA  EG  I+ R+P V++V GPQT +RLP++++  
Sbjct: 63  LGRVRELKEAK----PDLLIGVGGCVASQEGASIVSRAPYVDLVFGPQTLHRLPQMIDAR 118

Query: 144 RF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           R  G+  VD  +   +KF+ L        R  G TAF++I EGC K+C++CVVPYTRG E
Sbjct: 119 RTSGRAQVDITFPEIEKFDHLPPA-----RVEGPTAFVSIMEGCSKYCSYCVVPYTRGDE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG--EKCTFSDLLYSLSEIKGL 260
           +SR L  V+ E   L D GV E+TLLGQNVNA+RG    G  E   F+ L+  +++I G+
Sbjct: 174 VSRPLDDVLTEVAGLADQGVREVTLLGQNVNAYRGALTAGSSEVADFATLIEYVADIPGI 233

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+RYTTSHP++ +  LI  +  +  L+ +LHLPVQ GSDRIL  M R +T  EY+ +I 
Sbjct: 234 ERIRYTTSHPKEFTQRLIDTYAKVPKLVNHLHLPVQHGSDRILMVMKRGYTVLEYKSVIR 293

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R++RPD+++S+D IVGFPGET++DF   M LV  + Y  +FSF YSPR GTP +N+ +
Sbjct: 294 KLRAIRPDLSLSTDLIVGFPGETEEDFDKMMALVHDMRYDTSFSFIYSPRPGTPAANLHD 353

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSV- 438
               +VK +RL  +Q  + E     + + VG++  +L+E    K+  +L GR+   + V 
Sbjct: 354 DTPRDVKLKRLQLVQATIEENVARISQSMVGKVERILVEGPSRKDPNELAGRTENNRVVN 413

Query: 439 ---VLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
               L +    IG +I V+I      +L GELV+
Sbjct: 414 FPAPLAAHPRLIGQMIDVKINHAYPHSLRGELVL 447


>gi|304395674|ref|ZP_07377557.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Pantoea sp. aB]
 gi|304356968|gb|EFM21332.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Pantoea sp. aB]
          Length = 461

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 198/436 (45%), Positives = 278/436 (63%), Gaps = 12/436 (2%)

Query: 36  MNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSR 94
           MN YDS +M D+   + GY      ++AD+++LNTC IREKA EKV+  LGR R LK   
Sbjct: 1   MNEYDSSKMSDLLNTTHGYTLTEVPEEADILLLNTCSIREKAQEKVFHLLGRWRKLK--- 57

Query: 95  IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR-VVDTD 153
            +   D+++ V GCVA  EG+ I +R+P V++V GPQT +RLPE++   R  K  VVD  
Sbjct: 58  -ERNPDVIIGVGGCVASQEGDHIRQRAPCVDIVFGPQTLHRLPEMINTVRGTKSPVVDIS 116

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           +   +KF+RL        R  G TAF++I EGC+K+CTFCVVPYTRG E+SR    ++ E
Sbjct: 117 FPEIEKFDRLP-----DPRAEGPTAFVSIMEGCNKYCTFCVVPYTRGEEVSRPSDDILLE 171

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
             +L   GV E+ LLGQNVNA+RG   DGE CTF++LL  ++ I G+ R+R+TTSHP + 
Sbjct: 172 IAQLAAQGVREVNLLGQNVNAYRGATFDGEICTFAELLRLVAAIDGIDRIRFTTSHPIEF 231

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
           +D +I+ + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II ++R+ RPDI ISS
Sbjct: 232 TDDIIEVYRDTPELVSFLHLPVQSGSDRILTLMKRAHTALEYKAIIRKLRAARPDIEISS 291

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLC 393
           DFI+GFPGET  DF  TM L+ +I +  +FSF YS R GTP +++ + V E  K +RL  
Sbjct: 292 DFIIGFPGETQQDFEQTMKLIAEINFDVSFSFVYSARPGTPAADLPDDVSEEEKKQRLWI 351

Query: 394 LQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNSKNHNIGDIIK 452
           LQ ++ +Q  + +   VG +  +L+E   ++   ++ GR+   + V        IG  + 
Sbjct: 352 LQDRINQQAQAISRRMVGTVQRILVEGISRKNVMEVSGRTENNRVVNFEGSPEMIGRFVD 411

Query: 453 VRITDVKISTLYGELV 468
           V I DV  ++L G+LV
Sbjct: 412 VEIVDVYTNSLRGKLV 427


>gi|157962954|ref|YP_001502988.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Shewanella
           pealeana ATCC 700345]
 gi|229890653|sp|A8H7B6|MIAB_SHEPA RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|157847954|gb|ABV88453.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Shewanella pealeana ATCC
           700345]
          Length = 475

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 197/447 (44%), Positives = 288/447 (64%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS +M D+    +GY   ++ ++AD+++LNTC IREKA EKV+  
Sbjct: 3   KKLHIKTWGCQMNEYDSSKMADLLDEYEGYTLTDNAEEADVLLLNTCSIREKAQEKVFHQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK+   K+ G L++ V GCVA  EG+ I  R+  V+++ GPQT +RLPE++++ 
Sbjct: 63  LGRWKTLKD---KKPG-LIIGVGGCVASQEGKAIKERAQCVDLIFGPQTLHRLPEMIDQI 118

Query: 144 RFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           + GK+ V+D  +   +KF+RL        R  G +AF++I EGC K+C+FCVVPYTRG E
Sbjct: 119 KDGKKAVIDVSFPEVEKFDRLP-----EPRAEGPSAFVSIMEGCSKYCSFCVVPYTRGEE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR L  V+ E  +L + GV E+ LLGQNVNA+RG   D E CTF++LL  ++ I G+ R
Sbjct: 174 VSRPLDDVILEIAQLAEQGVREVNLLGQNVNAYRGATHDDEICTFAELLRYVAAIDGIDR 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LR+TTSHP + +  +I  + D   L+ +LHLPVQSGSD IL  M R H A EY+ II R+
Sbjct: 234 LRFTTSHPIEFTQDIIDVYEDTPELVSFLHLPVQSGSDLILTQMKRGHMAIEYKSIIRRL 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R  RPDI ISSDFI+GFPGE+  DF  TM L++ I +  +FSF YS R GTP +++ + V
Sbjct: 294 RKARPDILISSDFIIGFPGESKQDFADTMKLIEDIQFDHSFSFIYSARPGTPAADLPDNV 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLN 441
             + K ERL  LQ ++ +Q + ++   VG +  +L+E    K   +L GR+   + V   
Sbjct: 354 SLDEKKERLAILQDRITQQAMRYSRQMVGTVQRILVEGPSVKNPMELRGRTENSRVVNFE 413

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
             + +IG  + V I DV  ++L G  +
Sbjct: 414 GLHEHIGKFVDVEIVDVYTNSLRGVFI 440


>gi|94309398|ref|YP_582608.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Cupriavidus metallidurans
           CH34]
 gi|123384028|sp|Q1LR87|MIAB_RALME RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|93353250|gb|ABF07339.1| isopentenyl-adenosine A37 tRNA methylthiolase [Cupriavidus
           metallidurans CH34]
          Length = 450

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 202/456 (44%), Positives = 288/456 (63%), Gaps = 20/456 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ FVK+YGCQMN YDS +M D+   +QG E  ++++DAD+I+ NTC IREKA EKV+S 
Sbjct: 2   KKVFVKTYGCQMNEYDSDKMVDVLNATQGMEPTDNVEDADVILFNTCSIREKAQEKVFSE 61

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER- 142
           LGR++ LK ++     DL++ V GCVA  EG  I+ R+P V+VV GPQT +RLP+L+ R 
Sbjct: 62  LGRMKALKAAK----PDLVIGVGGCVASQEGASIVSRAPYVDVVFGPQTLHRLPDLINRR 117

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            + G   VD  +   +KF+ L        R  G +AF++I EGC K+C++CVVPYTRG E
Sbjct: 118 QQTGLSQVDISFPEIEKFDHLPPA-----RVDGPSAFVSIMEGCSKYCSYCVVPYTRGEE 172

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-GLDGEKCTFSDLLYSLSEIKGLV 261
           +SR    V+ E   L + GV E+TLLGQNVNA+RG  G   E   F+ L+  +++I G+ 
Sbjct: 173 VSRPFEDVLAEVAGLAEQGVREVTLLGQNVNAYRGAMGGTSEIADFALLIEYVADIPGIE 232

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+RYTTSHP++ +  LI+ +G  D L+ +LHLPVQ  SDR+L  M R ++  EY+ II R
Sbjct: 233 RIRYTTSHPKEFTSRLIELYGRCDKLVNHLHLPVQHASDRVLAGMKRGYSVLEYKSIIRR 292

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R++RPD+++SSDFIVGFPGETD DF   M +V +IGY  +FSF +SPR GTP +N+ + 
Sbjct: 293 LRALRPDMSMSSDFIVGFPGETDADFDKLMAMVHEIGYDTSFSFIFSPRPGTPAANLHDD 352

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSP------- 433
               VK  RL  LQ  + E     + + VG +  +L+E    K+  +L GR+        
Sbjct: 353 TPHEVKLRRLQLLQATIEENVQRISQSMVGTVQRILVEGPARKDPTELHGRTENNRVVNF 412

Query: 434 WLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
            L  V    ++  IG ++ V +T     +L GE VV
Sbjct: 413 ALPGVPQAQRDRMIGQMVDVNVTQAFPHSLRGEFVV 448


>gi|167579900|ref|ZP_02372774.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia
           thailandensis TXDOH]
          Length = 457

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 196/454 (43%), Positives = 292/454 (64%), Gaps = 18/454 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ +VK++GCQMN YDS +M D+   ++G E+ ++ +DAD+I+ NTC +REKA EKV+S 
Sbjct: 3   KKVYVKTFGCQMNEYDSDKMVDVLNAAEGLEKTDTPEDADIILFNTCSVREKAQEKVFSD 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE-R 142
           LGR+R LK ++     DLL+ V GCVA  EG  I+ R+P V++V GPQT +RLP++++ R
Sbjct: 63  LGRVRELKEAK----PDLLIGVGGCVASQEGASIVARAPYVDLVFGPQTLHRLPQMIDAR 118

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
              G+  VD  +   +KF+ L        R  G +AF++I EGC K+C++CVVPYTRG E
Sbjct: 119 RESGRAQVDITFPEIEKFDHLPPA-----RVEGPSAFVSIMEGCSKYCSYCVVPYTRGDE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG--EKCTFSDLLYSLSEIKGL 260
           +SR L  V+ E   L D GV E+TLLGQNVNA+RG    G  E   F+ L+  +++I G+
Sbjct: 174 VSRPLDDVLTEIAGLADQGVREVTLLGQNVNAYRGALTAGAHEIADFATLIEYVADIPGI 233

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+RYTTSHP++ +  L+  +  +  L+ +LHLPVQ GSDRIL +M R +T  EY+ +I 
Sbjct: 234 ERIRYTTSHPKEFTQRLLDVYAKVPKLVDHLHLPVQHGSDRILMAMKRGYTVLEYKSLIR 293

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R++RP++++S+D IVGFPGET+ DF  TM LV ++ Y  +FSF YSPR GTP +N+ +
Sbjct: 294 KLRAIRPNLSLSTDIIVGFPGETEADFDKTMALVHEMSYDTSFSFIYSPRPGTPAANLAD 353

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSV- 438
                VK ERL  LQ  + E     + + +G++  +L+E    K+  +L GR+   + V 
Sbjct: 354 DTPREVKLERLQHLQATIEENVARISQSMLGKVERILVEGPSRKDPNELAGRTENNRVVN 413

Query: 439 ---VLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
               L +    IG +I V+I      +L GELV+
Sbjct: 414 FPAPLAAHARLIGQMIDVKINHAYPHSLRGELVL 447


>gi|261379974|ref|ZP_05984547.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Neisseria subflava
           NJ9703]
 gi|284797173|gb|EFC52520.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Neisseria subflava
           NJ9703]
          Length = 440

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 195/448 (43%), Positives = 284/448 (63%), Gaps = 13/448 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQ--GYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           ++ F++++GCQMN YDS +M  +   +  G E+V   DDAD+I+ NTC +REKA EKV+S
Sbjct: 2   KKVFIRTFGCQMNEYDSEKMLSVLAEEHGGIEQVTQPDDADIILFNTCSVREKAQEKVFS 61

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-E 141
            LGR+R LK    ++  ++++ VAGCVA  EGE I++R+P V+VV GPQT +RLP+L+ +
Sbjct: 62  DLGRVRPLK----EKNPNVIIGVAGCVASQEGENIVKRAPYVDVVFGPQTLHRLPKLIVD 117

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           +   G   +D  +   +KF+ L        R  G +AF++I EGC K+C++CVVPYTRG 
Sbjct: 118 KETTGLSQIDISFPEIEKFDHLPPA-----RVEGGSAFISIMEGCSKYCSYCVVPYTRGE 172

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR L+ V+ E   L   GV EI LLGQNVNA+RG+  +GE C F+ LL  + EI G+ 
Sbjct: 173 EFSRPLNDVLTEIAGLAQQGVKEINLLGQNVNAYRGEMENGEICDFATLLRIVHEIPGIE 232

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           RLR+TTSHPR+ +D +I+ + DL  L+ +LHLP+QSGSDR+L +M R +TA EY+ II +
Sbjct: 233 RLRFTTSHPREFTDAIIECYRDLPKLVSHLHLPIQSGSDRVLSAMKRGYTALEYKSIIRK 292

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R++RPD+ +SSDFIVGFPGET+ +F  T+ LV  I +  +F F YSPR GTP +N+ + 
Sbjct: 293 LRAIRPDLCLSSDFIVGFPGETEREFEQTLKLVKDIAFDLSFVFIYSPRPGTPAANLHDD 352

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSVVL 440
                K  RL  L + +  +    N   VG +   L+E    K+  +L  R+   + V  
Sbjct: 353 TPHEEKVRRLEALNEVIEAETARINQTMVGTVQRCLVEGISKKDPDQLQARTANNRVVNF 412

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 I  +I + IT+    +L G+ V
Sbjct: 413 TGTPDMINQMIDLEITEAYTFSLKGKPV 440


>gi|269961561|ref|ZP_06175923.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269833602|gb|EEZ87699.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 474

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 201/447 (44%), Positives = 290/447 (64%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS +M D+   + GYE     ++AD+++LNTC IREKA EKV+  
Sbjct: 3   KKLLIKTWGCQMNEYDSSKMADLLNAANGYELTEEPEEADVLLLNTCSIREKAQEKVFHQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK+ +      +++ V GCVA  EG+ I +R+P V+V+ GPQT +RLPE+++++
Sbjct: 63  LGRWKTLKDKK----PGVVIGVGGCVATQEGDHIRQRAPYVDVIFGPQTLHRLPEMIKQS 118

Query: 144 RFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           +  +  V+D  +   +KF+RL        R  G TAF++I EGC K+CT+CVVPYTRG E
Sbjct: 119 QSDEAPVMDISFPEIEKFDRLP-----EPRAEGATAFVSIMEGCSKYCTYCVVPYTRGEE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR +  V+ E  +L D GV E+ LLGQNVNA+RG   DGE C+F++LL  ++ I G+ R
Sbjct: 174 VSRPMDDVLFEIAQLADQGVREVNLLGQNVNAYRGPMHDGEICSFAELLRLVASIDGIDR 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP + +D +I  + D   L+ +LHLPVQSGSDR+L  M R HT  EY+ II ++
Sbjct: 234 IRFTTSHPLEFTDDIIAVYEDTPELVSFLHLPVQSGSDRVLTMMKRPHTGIEYKSIIRKL 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R  RPDI ISSDFIVGFPGETD DF+ TM L+  + +  +FSF +SPR GTP ++    +
Sbjct: 294 RKARPDIQISSDFIVGFPGETDKDFQDTMKLIKDVDFDMSFSFIFSPRPGTPAADYPCDL 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441
            E VK ERL  LQ+ +  Q + ++   +G    VL+E   K+   +L  R+   + V   
Sbjct: 354 SEQVKKERLYELQQTVNAQAMRYSRLMLGTEQRVLVEGPSKKNLMELRARTENNRVVNFE 413

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                IG  + V+ITDV  ++L GELV
Sbjct: 414 GSADLIGQFVDVKITDVFANSLRGELV 440


>gi|261341274|ref|ZP_05969132.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Enterobacter cancerogenus
           ATCC 35316]
 gi|288316579|gb|EFC55517.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Enterobacter cancerogenus
           ATCC 35316]
          Length = 474

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 193/448 (43%), Positives = 288/448 (64%), Gaps = 14/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS +M D+   + GY+   +  +AD+++LNTC IREKA EKV+  
Sbjct: 3   KKLHIKTWGCQMNEYDSSKMADLLDTTHGYQLTENPKEADVLLLNTCSIREKAQEKVFHV 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK    ++  DL++ V GCVA  EG+ I +R+P V++V GPQT +RLPE++ + 
Sbjct: 63  LGRWKLLK----RKNPDLIIGVGGCVASQEGKLIRQRAPYVDIVFGPQTLHRLPEMINQV 118

Query: 144 RFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           R G R  VVD  +   +KF+RL        R  G TAF++I EGC+K+CT+CVVPYTRG 
Sbjct: 119 R-GNRSPVVDVSFPEIEKFDRLP-----EPRADGPTAFVSIMEGCNKYCTYCVVPYTRGE 172

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E+SR    ++ E  +L   GV E+ LLGQNVNAWRG+  DG   +F++LL  ++ I G+ 
Sbjct: 173 EVSRPADDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTTGSFAELLRLVAAIDGID 232

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHP + +D +I  + D   L+ +LHLP+Q GSDR+L  M R HT  EY+  I +
Sbjct: 233 RIRFTTSHPMEFTDDIIDVYRDTPELVSFLHLPIQCGSDRVLNLMGRPHTVLEYKSTIRK 292

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R  RPDI ISSDFIVGFPGET DDF  TM L+ ++ +  ++SF +S R GTP ++M++ 
Sbjct: 293 LREARPDIQISSDFIVGFPGETADDFERTMKLIGEVNFDVSYSFIFSARPGTPAADMVDD 352

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVL 440
           V E  K +RL  LQ+++ +Q  +++   +G +  +L+E   ++   +L GR+   + V  
Sbjct: 353 VPEEEKKQRLYILQERINQQANAWSRRMLGTVQRILVEGTSRKSIMELSGRTENNRVVNF 412

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 IG  + V I DV  ++L  ++V
Sbjct: 413 EGTPDMIGKFVDVEIVDVLTNSLRAKVV 440


>gi|325201495|gb|ADY96949.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Neisseria meningitidis
           M01-240149]
 gi|325207475|gb|ADZ02927.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Neisseria meningitidis
           NZ-05/33]
          Length = 442

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 195/448 (43%), Positives = 282/448 (62%), Gaps = 13/448 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQ--GYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           ++ F++++GCQMN YDS +M  +   +  G E+V   D+AD+I+ NTC +REKA EKV+S
Sbjct: 2   KKVFIRTFGCQMNEYDSDKMLAVLAEEHGGIEQVTQADEADIILFNTCSVREKAQEKVFS 61

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-E 141
            LGR+R LK    ++   L++ VAGCVA  EGE I++R+P V+VV GPQT +RLP+++ +
Sbjct: 62  DLGRVRPLK----EKNPGLIIGVAGCVASQEGENIIKRAPYVDVVFGPQTLHRLPKMIVD 117

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           +   G   VD  +   +KF+ L        R  G  AF++I EGC K+C+FCVVPYTRG 
Sbjct: 118 KETSGLSQVDISFPEIEKFDHLPPA-----RVEGGAAFVSIMEGCSKYCSFCVVPYTRGE 172

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR L+ V+ E   L   GV EI LLGQNVNA+RG+  DGE C F+ LL  + EI G+ 
Sbjct: 173 EFSRPLNDVLTEIANLAQQGVKEINLLGQNVNAYRGEMDDGEICDFATLLRIVHEIPGIE 232

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHPR+ +D +I+ + DL  L+ +LHLP+QSGSDR+L +M R +TA EY+ II +
Sbjct: 233 RMRFTTSHPREFTDSIIECYRDLPKLVSHLHLPIQSGSDRVLSAMKRGYTALEYKSIIRK 292

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R++RPD+ +SSDFIVGFPGET+ +F  T+ LV  I +  +F F YSPR GTP +N+ + 
Sbjct: 293 LRAIRPDLCLSSDFIVGFPGETEREFEQTLKLVKDIAFDLSFVFIYSPRPGTPAANLHDD 352

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSVVL 440
                K  RL  L + +  +    N   +G +   L+E    K+  +L  R+   + V  
Sbjct: 353 TPHEEKVRRLEALNEVIEAETARINQTMIGTVQRCLVEGISKKDPDQLQARTANNRVVNF 412

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 I  +I + IT+    +L G+ V
Sbjct: 413 TGTPDMINQMIDLEITEAYTFSLRGKTV 440


>gi|237746577|ref|ZP_04577057.1| tRNA modifying enzyme [Oxalobacter formigenes HOxBLS]
 gi|229377928|gb|EEO28019.1| tRNA modifying enzyme [Oxalobacter formigenes HOxBLS]
          Length = 448

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 195/450 (43%), Positives = 288/450 (64%), Gaps = 15/450 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQG-YERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ F+K++GCQMN YDS +M D+  ++  Y R ++ ++ADLI+LNTC +REKA EKV+S 
Sbjct: 3   KKVFIKTFGCQMNEYDSGKMADLLEAEANYLRTDNPEEADLILLNTCSVREKAQEKVFSD 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER- 142
           LGR R L+ +R      L++ V+GCVA  EGE +++R+P VN+V GPQT +RLP+++   
Sbjct: 63  LGRFRKLRKNR----AGLIIGVSGCVASQEGEALIKRAPYVNLVFGPQTLHRLPDMIRAF 118

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            + G+  +DT +   +KF+ L        R     A +T+ EGC K+C++C+VPYTRG E
Sbjct: 119 EKTGEPQIDTSFPEIEKFDYLPPA-----RVDAPVACVTVMEGCSKYCSYCIVPYTRGAE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR    V+ E  +L   GV EITLLGQNVNA+RG+   GE   F+ L+ +++EI G+ R
Sbjct: 174 VSRRFGDVLVEVAELAGQGVKEITLLGQNVNAYRGEIEGGETADFAMLIETIAEIPGIER 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+ TSHPR+ +  LI  +  +  L+ +L+LP Q GSDRIL +M R +TA EY+ II R+
Sbjct: 234 IRFVTSHPREFTQRLIDVYARVPQLVSHLYLPAQHGSDRILAAMKRGYTALEYKSIIRRL 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           +++RPD+ +SSDFIVGFPGETD DF A M L+D+IG+  +FSF YSPR GTP + +   +
Sbjct: 294 KAIRPDLLVSSDFIVGFPGETDADFDAMMKLIDEIGFDNSFSFLYSPRPGTPAAALPMDI 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE----KHGKEKGKLVGRSPWLQSV 438
             +V+ ERL  LQ+K+      +N   VG + +VLIE    K+ ++     G +  +   
Sbjct: 354 PLSVRKERLQRLQEKIDSHTRHYNRLMVGSVQQVLIEAISHKNDRQVQGKTGNNRVVHIP 413

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           V       IG +  VRIT+    +L GE  
Sbjct: 414 VEGDPKALIGQMRDVRITEAANFSLRGEFA 443


>gi|187477340|ref|YP_785364.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bordetella
           avium 197N]
 gi|123765978|sp|Q2KWE0|MIAB_BORA1 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|115421926|emb|CAJ48446.1| putative nucleic acid binding protein [Bordetella avium 197N]
          Length = 475

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 194/448 (43%), Positives = 295/448 (65%), Gaps = 15/448 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + +++++GCQMN YDS +M D+    QG E  ++ ++AD+I+ NTC +REKA EKV+S L
Sbjct: 28  KIYIRTFGCQMNEYDSDKMVDVLREDQGLEMTDNPEEADVILFNTCSVREKAQEKVFSDL 87

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR+++LK    K   +L++ V GCVA  EG  I++R+P V+VV GPQT +RLPEL+ R R
Sbjct: 88  GRVQHLK----KLNPNLVIGVGGCVASQEGAAIVKRAPYVDVVFGPQTLHRLPELIRRRR 143

Query: 145 -FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             G   VD  +   +KF+ +       +R  G TAF++I EGC K+C+FCVVPYTRG E+
Sbjct: 144 DEGVSQVDISFPEIEKFDNMPP-----SRVEGATAFVSIMEGCSKYCSFCVVPYTRGEEV 198

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK--GLDGEKCTFSDLLYSLSEIKGLV 261
           SR    V+ E   L D GV E+TLLGQNVNA+RG+  G D E   F+ LL  + EI G+ 
Sbjct: 199 SRPFEDVLTEVADLADQGVREVTLLGQNVNAYRGRIEGSD-EIADFAMLLEYVHEIPGIE 257

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+RYTTSHP++M+  +++A+  L  L+ +LHLPVQ+GSDR+L +M R +TA E++ ++ +
Sbjct: 258 RIRYTTSHPKEMTQRMVEAYARLPKLVSFLHLPVQAGSDRVLAAMKRGYTALEFKSVVRK 317

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R+ RP++ +SSDFIVGFPGET++DF+ TM L+  +G+  +FSF YS R GTP +++ + 
Sbjct: 318 LRAARPNLTLSSDFIVGFPGETEEDFQKTMKLIADVGFDTSFSFVYSRRPGTPAADLQDD 377

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVL 440
             ++VK +RL  LQ  + EQ  +   + VG    +L+E    ++  +L+GR+   + V  
Sbjct: 378 TPQDVKLKRLQQLQALINEQAAAIAQSMVGTRQRLLVEGPSRRDPNELMGRTENNRIVNF 437

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
              +  IG+++ V IT    ++L G + 
Sbjct: 438 EGPSRLIGNMVDVIITHAFTNSLRGRVA 465


>gi|270159532|ref|ZP_06188188.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Legionella longbeachae
           D-4968]
 gi|269987871|gb|EEZ94126.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Legionella longbeachae
           D-4968]
          Length = 434

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 200/437 (45%), Positives = 279/437 (63%), Gaps = 12/437 (2%)

Query: 36  MNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSR 94
           MN YDS +M D+   S G  + + ++DAD+I+LNTC IREKA EKV+S LG+ R  K   
Sbjct: 1   MNEYDSSKMADVLLQSHGLVKTDQVEDADVILLNTCSIREKAQEKVFSQLGQWREYK--- 57

Query: 95  IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-ERARFGKRVVDTD 153
             +   +++ V GCVA  EG +I++R+P V++V GPQT +RLPELL ER    K VVD  
Sbjct: 58  -AKNPHVVIGVGGCVASQEGADIIKRAPFVDLVFGPQTLHRLPELLNERMEKKKPVVDIS 116

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           +   +KF+ L        R  G TAF++I EGC K+C+FCVVPYTRG EISR    V+ E
Sbjct: 117 FPEIEKFDHLPA-----PRAEGPTAFVSIMEGCSKYCSFCVVPYTRGTEISRPFDDVLAE 171

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
             +L   GV EI LLGQNVN +RG   +G+    + L++ L+ I+G+ R+R+TTSHP   
Sbjct: 172 CYQLATQGVREINLLGQNVNDYRGTMENGDIADLALLIHYLAAIEGIDRIRFTTSHPLAF 231

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
           SD LI A+ ++  L  +LHLPVQSGSDRIL  M R +TA E++  I ++R +RPDI +S+
Sbjct: 232 SDNLINAYAEVPELANHLHLPVQSGSDRILGLMKRGYTALEFKSKIRKLRKIRPDIRLST 291

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLC 393
           D IVGFPGETD DF+ TMDLV +IG+  +FSF YSPR GTP +N+ +     VK +RL  
Sbjct: 292 DIIVGFPGETDKDFQDTMDLVHEIGFDTSFSFIYSPRPGTPAANLPDDTPLEVKKQRLQI 351

Query: 394 LQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLVGRSPWLQSVVLNSKNHNIGDIIK 452
           LQ +L  Q   ++ + VG I ++L+  H K+   +L GR+   + V  +   H IG  + 
Sbjct: 352 LQNRLLLQASRYSQSMVGTIQKILVTGHSKKNSQQLSGRTECNRVVNFDGPAHLIGQFVD 411

Query: 453 VRITDVKISTLYGELVV 469
            +I+D   ++L G L+ 
Sbjct: 412 TQISDALPNSLRGRLIA 428


>gi|300715843|ref|YP_003740646.1| tRNA-thiotransferase [Erwinia billingiae Eb661]
 gi|299061679|emb|CAX58795.1| tRNA-thiotransferase [Erwinia billingiae Eb661]
          Length = 474

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 192/448 (42%), Positives = 289/448 (64%), Gaps = 12/448 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS +M D+  S  GY      ++AD+++LNTC IREKA EKV+  
Sbjct: 3   KKLLIKTWGCQMNEYDSSKMADLLNSTHGYTLTEVAEEADVLLLNTCSIREKAQEKVFHQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK    ++  DL++ V GCVA  EG+ I +R+P V++V GPQT +RLPE++   
Sbjct: 63  LGRWKLLK----EKNPDLVIGVGGCVASQEGDLIRQRAPCVDIVFGPQTLHRLPEMINTV 118

Query: 144 RFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           +  K  VVD  +   +KF+RL        R  G +AF++I EGC+K+CTFCVVPYTRG E
Sbjct: 119 KGTKSPVVDISFPEIEKFDRLP-----EPRADGPSAFVSIMEGCNKYCTFCVVPYTRGEE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR    ++ E  +L   GV E+ LLGQNVNA+RG+  DG+ C+F+DLL  ++ I G+ R
Sbjct: 174 VSRPSDDILFEIAQLASQGVREVNLLGQNVNAYRGETFDGDICSFADLLRLVAAIDGIDR 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP + +D +I  + D   L+ +LHLPVQSGSDRIL  M R HTA EY+  I ++
Sbjct: 234 IRFTTSHPIEFTDDIIDVYRDTPELVSFLHLPVQSGSDRILTLMKRSHTALEYKSTIRKL 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
            + RP + +SSDFI+GFPGET  DF  TM L+ +I +  +FSF YS R GTP +++ + V
Sbjct: 294 LAARPAMQMSSDFIIGFPGETQQDFEQTMKLIGEINFDTSFSFIYSARPGTPAADLPDDV 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441
            +  K ERL  LQ+++ +Q ++++ + +G +  +L+E+  +    +L GR+   + V   
Sbjct: 354 SDEEKKERLWLLQQRINQQVMNWSRSKLGTVQRILVERLSRRNVMELAGRTECNRVVNFE 413

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELVV 469
                IG  + V I +V  +++ G +V+
Sbjct: 414 GTPEMIGKFVDVEIVEVHTNSMRGVVVL 441


>gi|119477442|ref|ZP_01617633.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [marine gamma
           proteobacterium HTCC2143]
 gi|119449368|gb|EAW30607.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [marine gamma
           proteobacterium HTCC2143]
          Length = 465

 Score =  373 bits (958), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 200/448 (44%), Positives = 293/448 (65%), Gaps = 13/448 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ ++K++GCQMN YDS R++D+   S G E  ++ D+AD+++LNTC IREKA EKV+  
Sbjct: 27  KKLYIKTHGCQMNEYDSDRLQDLLGTSHGLETTDNPDEADVLLLNTCSIREKAQEKVFHQ 86

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR R LK +      DL++ V GCVA  EG+ I +R+P V+VV GPQT +R+PE++  +
Sbjct: 87  LGRWRQLKEAN----PDLIIGVGGCVASQEGDAIGKRAPFVDVVFGPQTLHRVPEMINAS 142

Query: 144 RF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           +  G  +VD  +   +KF+ L           G +AF++I EGC K+CTFCVVPYTRG E
Sbjct: 143 KPDGPVLVDVTFPEIEKFDALP-----EPSSDGPSAFVSIMEGCSKYCTFCVVPYTRGEE 197

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR    V+ E   L   GV E+ LLGQNVNA+RG+  + E   F++LL+ ++ + G+ R
Sbjct: 198 VSRPFDDVIAEIAHLTSQGVKEVNLLGQNVNAYRGENHEAEIVEFAELLHFVAAVPGIER 257

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +RYTTSHP + SD LI+A+ D+  L+ +LHLPVQSGSDRIL +M R HT  EY + + R+
Sbjct: 258 IRYTTSHPVEFSDALIEAYADIPELVSHLHLPVQSGSDRILAAMKRGHTRAEYIEKMSRL 317

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           + +RPDI+ SSDFI+GFPGET+ DF+ TM L+ +IG+  +FSF YS R GTP + + ++ 
Sbjct: 318 KDIRPDISFSSDFIIGFPGETEQDFQDTMALITEIGFDTSFSFIYSARPGTPAAELDDET 377

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSVVLN 441
            E VK +RL  LQ+++ +Q    +   VG   ++LI     K++ +L GR+   + V   
Sbjct: 378 PETVKKQRLKLLQQQINQQAQLISRQMVGNTEKILITGVSRKDEKELQGRTENNRVVNFP 437

Query: 442 SKNHN-IGDIIKVRITDVKISTLYGELV 468
           S N + IG    V IT+   ++L G+LV
Sbjct: 438 STNQSLIGSFSFVTITEALPNSLRGQLV 465


>gi|262172028|ref|ZP_06039706.1| tRNA-i(6)A37 methylthiotransferase [Vibrio mimicus MB-451]
 gi|262402694|ref|ZP_06079255.1| tRNA-i(6)A37 methylthiotransferase [Vibrio sp. RC586]
 gi|261893104|gb|EEY39090.1| tRNA-i(6)A37 methylthiotransferase [Vibrio mimicus MB-451]
 gi|262351476|gb|EEZ00609.1| tRNA-i(6)A37 methylthiotransferase [Vibrio sp. RC586]
          Length = 474

 Score =  373 bits (958), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 201/447 (44%), Positives = 291/447 (65%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS +M D+   + GYE     ++AD+++LNTC IREKA EKV+  
Sbjct: 3   KKLLIKTWGCQMNEYDSSKMADLLNAANGYELTEIPEEADVLLLNTCSIREKAQEKVFHQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK+ +      +++ V GCVA  EG+ I  R+P V+V+ GPQT +RLPE+++++
Sbjct: 63  LGRWKTLKDKK----PGVVIGVGGCVATQEGDSIRDRAPYVDVIFGPQTLHRLPEMIKQS 118

Query: 144 RFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           +  +  V+D  +   +KF+RL        R  G TAF++I EGC K+CT+CVVPYTRG E
Sbjct: 119 QISEAPVMDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCSKYCTYCVVPYTRGEE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR +  V+ E  +L + GV E+ LLGQNVNA+RG   DGE C+F++LL  ++ I G+ R
Sbjct: 174 VSRPMDDVLFEIAQLAEQGVREVNLLGQNVNAYRGATHDGEICSFAELLRLVATIDGIDR 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP + +D +I  + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II ++
Sbjct: 234 IRFTTSHPLEFTDDIIAVYEDTPELVSFLHLPVQSGSDRILTMMKRPHTAIEYKSIIRKL 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R  RPDI ISSDFIVGFPGETD DF+ TM L+  + +  +FSF +SPR GTP ++    +
Sbjct: 294 RKARPDIQISSDFIVGFPGETDKDFQDTMKLIRDVDFDMSFSFIFSPRPGTPAADYPCDL 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441
            E VK ERL  LQ+++  Q + ++   +G    +L+E   K+   +L GR+   + V   
Sbjct: 354 SEEVKKERLYELQQQINSQAMRYSRLMLGTEQRILVEGPSKKDLMELRGRTENNRVVNFE 413

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                IG  + V+I DV  ++L GELV
Sbjct: 414 GSPELIGQFVDVKIVDVFANSLRGELV 440


>gi|119944308|ref|YP_941988.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Psychromonas ingrahamii
           37]
 gi|229890620|sp|A1SSC4|MIAB_PSYIN RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|119862912|gb|ABM02389.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Psychromonas ingrahamii
           37]
          Length = 473

 Score =  373 bits (958), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 194/446 (43%), Positives = 284/446 (63%), Gaps = 12/446 (2%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +  VK++GCQMN YDS +M D+  S  GY  V   +DAD+++LNTC IREKA EKV+  L
Sbjct: 4   KLHVKTWGCQMNEYDSSKMADLLNSTNGYISVEHAEDADVVLLNTCSIREKAQEKVFHQL 63

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR + LK ++     +L++ V GCVA  EG+ I  R+P V++V GPQT +RLPE+++  +
Sbjct: 64  GRWKKLKVNK----PNLVIGVGGCVASQEGKAIRSRAPFVDIVFGPQTLHRLPEMIKEVQ 119

Query: 145 FGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             K  VVD  +   +KF+ L        +  G TAF++I EGC K+C+FCVVPYTRG E+
Sbjct: 120 ENKGTVVDVSFPEIEKFDSLP-----EPKADGATAFVSIMEGCSKYCSFCVVPYTRGEEV 174

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR L  V+ E  +L + GV E+TLLGQNVN++ G   DG+ C+F++LL  ++ I G+ RL
Sbjct: 175 SRPLDDVLLEVAQLAEQGVREVTLLGQNVNSYLGATYDGDTCSFAELLRFVASIDGIDRL 234

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           RY TS+P D SD +I  + D   L+ +LHLPVQ+GSDRIL +M R HT  +Y+  I R+ 
Sbjct: 235 RYVTSNPIDFSDEIIAVYEDTPELVNFLHLPVQAGSDRILAAMKRGHTVAQYKDQIARLL 294

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
            VRP++ +SSDFI+GFP ETD DF  TMDL+  I +  ++SF YS R GTP ++M + V 
Sbjct: 295 QVRPELTVSSDFIIGFPNETDHDFEQTMDLIKYINFDTSYSFIYSQRPGTPAADMPDDVT 354

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNS 442
              K +RL  LQ ++++Q        VG +  +L+E   ++   +L GR+   + V    
Sbjct: 355 LETKKQRLAILQDRIQQQSQGIGRKMVGSVQRILVEGPSRKNIMELCGRTENNRIVNFEG 414

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
            + +IG  + V IT+V  +++ G+ +
Sbjct: 415 DHRSIGGFVDVEITEVHTNSIRGKFI 440


>gi|262394980|ref|YP_003286834.1| tRNA-i(6)A37 methylthiotransferase [Vibrio sp. Ex25]
 gi|262338574|gb|ACY52369.1| tRNA-i(6)A37 methylthiotransferase [Vibrio sp. Ex25]
          Length = 474

 Score =  373 bits (958), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 202/447 (45%), Positives = 288/447 (64%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS +M D+   + GYE     ++AD+++LNTC IREKA EKV+  
Sbjct: 3   KKLLIKTWGCQMNEYDSSKMADLLNAANGYELTEEPEEADVLLLNTCSIREKAQEKVFHQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK+ +      +++ V GCVA  EG+ I  R+P V+V+ GPQT +RLPE+++++
Sbjct: 63  LGRWKTLKDKK----PGVVIGVGGCVATQEGDHIRERAPYVDVIFGPQTLHRLPEMIKQS 118

Query: 144 RFG-KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           +     V+D  +   +KF+RL        R  G TAF++I EGC K+CT+CVVPYTRG E
Sbjct: 119 QSDDAPVMDISFPEIEKFDRLP-----EPRAEGATAFVSIMEGCSKYCTYCVVPYTRGEE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR +  V+ E  +L + GV E+ LLGQNVNA+RG   DGE C+F++LL  ++ I G+ R
Sbjct: 174 VSRPMDDVLFEIAQLAEQGVREVNLLGQNVNAYRGPTHDGEICSFAELLRLVASIDGIDR 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP + +D +I  + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II ++
Sbjct: 234 IRFTTSHPLEFTDDIIAVYEDTPELVSFLHLPVQSGSDRILTMMKRPHTAIEYKSIIRKL 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R  RPDI ISSDFIVGFPGETD DF+ TM L+  + +  +FSF +SPR GTP ++    V
Sbjct: 294 RKARPDIQISSDFIVGFPGETDKDFQDTMKLIKDVDFDMSFSFIFSPRPGTPAADYPCDV 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441
            E VK ERL  LQ+ +  Q + ++   +G    VL+E   K+   +L  R+   + V   
Sbjct: 354 SEQVKKERLYELQQTINAQAMRYSRLMLGTEQRVLVEGPSKKNLMELRARTENNRVVNFE 413

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                IG  + V+I DV  ++L GELV
Sbjct: 414 GSADLIGQFVDVKIVDVFANSLRGELV 440


>gi|254787739|ref|YP_003075168.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Teredinibacter
           turnerae T7901]
 gi|237686553|gb|ACR13817.1| isopentenyl-adenosine A37 tRNA methylthiotransferase
           [Teredinibacter turnerae T7901]
          Length = 451

 Score =  373 bits (958), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 192/414 (46%), Positives = 273/414 (65%), Gaps = 13/414 (3%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKV 80
           I  ++ F++++GCQMN YDS RM+D+   S      ++ D+AD++++NTC IREKA +K+
Sbjct: 5   ITTKKLFIQTHGCQMNEYDSARMQDLLGASHQMVPTDNPDEADVLLVNTCSIREKAQDKL 64

Query: 81  YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140
           +  LGR ++LK    ++  +L++ V GCVA  EGE I +R+P V+++ GPQT +RLPE++
Sbjct: 65  FHQLGRWKHLK----EKNPELIIGVGGCVASQEGENIAKRAPFVDLIFGPQTLHRLPEMI 120

Query: 141 ERAR-FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           E  R  G  VVD  +   +KF+RL   +       G TAF+++ EGC K+CTFCVVPYTR
Sbjct: 121 ETPRENGAVVVDISFPEIEKFDRLPEPEAD-----GATAFVSVMEGCSKYCTFCVVPYTR 175

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G E+SR    V+ E   L   GV EI LLGQNVNA+RG G DG     ++L+  +++I G
Sbjct: 176 GEEVSRPARDVLKECAHLAGQGVREINLLGQNVNAYRGDGPDG-VVDLAELITLVAKIDG 234

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           + R+R+TTSHP + +D LI  + ++  L+ +LHLPVQSGSDRIL +M R HTA EY+  +
Sbjct: 235 IDRIRFTTSHPVEFTDSLIDVYAEVPELVSHLHLPVQSGSDRILMAMKRGHTALEYKSKM 294

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            RIR  RPDI  SSDFIVGFPGETD DF ATM L+  IG+  +FSF YS R GTP ++M 
Sbjct: 295 RRIRQARPDICFSSDFIVGFPGETDADFEATMKLIADIGFDMSFSFIYSSRPGTPAADMK 354

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRS 432
           +   + VK +RL  LQ+++ +Q    +   VG    VL+  +  K+ G+L GR+
Sbjct: 355 DDTPQEVKKQRLALLQQRINQQSQDISRKMVGNTERVLVTGYSKKDPGQLSGRT 408


>gi|229592783|ref|YP_002874902.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Pseudomonas
           fluorescens SBW25]
 gi|229364649|emb|CAY52570.1| conserved hypothetical protein [Pseudomonas fluorescens SBW25]
          Length = 442

 Score =  373 bits (958), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 197/448 (43%), Positives = 283/448 (63%), Gaps = 13/448 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ +++++GCQMN YDS RM D+    Q  E     +DAD+I+LNTC IRE+A ++VYS 
Sbjct: 3   KKLYIETHGCQMNEYDSSRMVDLLGEHQALEVTARAEDADVILLNTCSIRERAQDRVYSQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR R LK +      D+++ V GCVA  EG  I  R+P V+VV GPQT +RLPE+++ A
Sbjct: 63  LGRWRELKLA----NPDMVIAVGGCVASQEGAAIRDRAPYVDVVFGPQTLHRLPEMIDAA 118

Query: 144 RFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           R  K   VD  +   +KF+ L        R  G +A++++ EGC K+CTFCVVPYTRG E
Sbjct: 119 RITKLPQVDVSFPEIEKFDHLP-----EPRIDGPSAYVSVMEGCSKYCTFCVVPYTRGEE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR    V+ E   L +NGV E+TLLGQNVN +RG   DG     ++L+  ++ + G+ R
Sbjct: 174 VSRPFDDVLSEIIHLAENGVREVTLLGQNVNGYRGLTQDGRLADLAELIRVVAAVDGIER 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +RYTTSHP + SD LI+AH ++  L+ +LHLPVQSGSDRIL +M R HTA EY+  + ++
Sbjct: 234 IRYTTSHPLEFSDSLIQAHAEVPELVKHLHLPVQSGSDRILSAMKRNHTALEYKSKLRKL 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+  P I ISSDFIVGFPGET+ DF+ TM L++ +G+  ++SF YS R GTP ++++++ 
Sbjct: 294 RAAVPGICISSDFIVGFPGETEKDFQQTMKLIEDVGFDFSYSFVYSQRPGTPAADLVDET 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLN 441
            E +K ERL  LQ +L +Q    +   VG    +L+  +  K+ G+L GR+   + V   
Sbjct: 354 PEALKKERLNALQHRLNQQGFEISRQMVGSTQRILVTDYSKKDPGELQGRTENNRIVNFR 413

Query: 442 SKNHN-IGDIIKVRITDVKISTLYGELV 468
             N   IG    V I   +  +L G L+
Sbjct: 414 CDNPTLIGQFADVHIDAAQPHSLRGSLL 441


>gi|170728025|ref|YP_001762051.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Shewanella
           woodyi ATCC 51908]
 gi|229890658|sp|B1KDV4|MIAB_SHEWM RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|169813372|gb|ACA87956.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Shewanella woodyi ATCC
           51908]
          Length = 474

 Score =  373 bits (958), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 194/447 (43%), Positives = 284/447 (63%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS +M D+    +GY      ++AD+++LNTC IREKA EKV+  
Sbjct: 3   KKLHIKTWGCQMNEYDSSKMADLMDEYKGYTLTEEAEEADVLLLNTCSIREKAQEKVFHQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK+    +  +L++ V GCVA  EG+ I  R+  V+++ GPQT +RLPE++++ 
Sbjct: 63  LGRWKKLKD----KNPNLIIGVGGCVASQEGKVIKDRAQCVDLIFGPQTLHRLPEMIDQI 118

Query: 144 RFG-KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
             G K V+D  +   +KF+RL        R  G +AF++I EGC K+C+FCVVPYTRG E
Sbjct: 119 EAGGKAVIDVSFPEIEKFDRLP-----EPRADGPSAFVSIMEGCSKYCSFCVVPYTRGEE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR L  V+ E  +L + GV E+ LLGQNVNA+RG   D E CTF++LL  ++ I G+ R
Sbjct: 174 VSRPLDDVILEIAQLAEQGVREVNLLGQNVNAYRGATHDDEICTFAELLRYVAAIDGIDR 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LR+TTSHP + +  +I  + D   L+ +LHLPVQSGSDRIL  M R H A EY+ II R+
Sbjct: 234 LRFTTSHPIEFTQDIIDVYEDTPELVSFLHLPVQSGSDRILTQMKRGHMAIEYKSIIRRL 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R  RPDI +SSDFI+GFPGE+  DF  TM L++ + +  +FSF YS R GTP S++ + V
Sbjct: 294 RKARPDIQVSSDFIIGFPGESKQDFEDTMKLIEDVQFDHSFSFIYSARPGTPASDLPDDV 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLN 441
             + K ERL  LQ ++ +Q + ++   +G +  +L+E    K   +L GR+   + V   
Sbjct: 354 TLDEKKERLAILQDRITQQAMRYSRQMLGTVQRILVEGPSVKNPMELRGRTETSRVVNFE 413

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
           +   +IG  + V I DV  ++L G  +
Sbjct: 414 ADPKHIGSFVDVEIVDVYTNSLRGNFI 440


>gi|294142164|ref|YP_003558142.1| tRNA-i(6)A37 modification enzyme MiaB [Shewanella violacea DSS12]
 gi|293328633|dbj|BAJ03364.1| tRNA-i(6)A37 modification enzyme MiaB [Shewanella violacea DSS12]
          Length = 474

 Score =  373 bits (958), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 192/447 (42%), Positives = 287/447 (64%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS +M D+    +GY   ++ ++AD+++LNTC IREKA EKV+  
Sbjct: 3   KKLHIKTWGCQMNEYDSSKMADLMDEYKGYTLTDNAEEADVLLLNTCSIREKAQEKVFHQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK+    +  +L++ V GCVA  EG+ I  R+  V+++ GPQT +RLPE++++ 
Sbjct: 63  LGRWKKLKD----KNPNLIIGVGGCVASQEGKMIKERAKCVDIIFGPQTLHRLPEMVDQV 118

Query: 144 R-FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           +  GK V+D  +   +KF+RL        R  G TAF++I EGC K+C+FCVVPYTRG E
Sbjct: 119 KQGGKAVIDISFPEIEKFDRLP-----EPRADGPTAFVSIMEGCSKYCSFCVVPYTRGEE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR +  V+ E  +L + GV E+ LLGQNVNA+RG   D + CTF++LL  +++I G+ R
Sbjct: 174 VSRPVDDVILEVAQLAEQGVREVNLLGQNVNAFRGATHDDDICTFAELLRYIADIDGIDR 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP + S  +I  + D   L+ +LHLPVQSGSD IL  M R H A EY+ II R+
Sbjct: 234 VRFTTSHPIEFSQDIIDVYEDTPELVSFLHLPVQSGSDHILTQMKRGHMAIEYKSIIRRL 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R  RPDI ISSDFI+GFPGE+  DF  TM L++ + +  +FSF YS R GTP +++ + V
Sbjct: 294 RKARPDIQISSDFIIGFPGESKQDFADTMKLIEDVAFDHSFSFIYSARPGTPAADLPDDV 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLN 441
               K ERL  LQ+++ +Q + ++   +G +  +L+E    K   +L GR+   + V   
Sbjct: 354 TLAEKKERLAILQERITQQAMRYSRQMLGTVQRILVEGPSVKNPMELRGRTETSRVVNFE 413

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
           +   +IG  + V I DV  ++L G  +
Sbjct: 414 ADPKHIGSFVDVEIVDVYTNSLRGTFI 440


>gi|288942386|ref|YP_003444626.1| MiaB family RNA modification enzyme [Allochromatium vinosum DSM
           180]
 gi|288897758|gb|ADC63594.1| RNA modification enzyme, MiaB family [Allochromatium vinosum DSM
           180]
          Length = 441

 Score =  373 bits (958), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 199/449 (44%), Positives = 281/449 (62%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           +P++ F+++YGCQMN YDS R+      + G E  +  ++AD+++LNTC IREKA EKV+
Sbjct: 1   MPRKLFIQTYGCQMNEYDSARLATALRVAAGLELTDQPEEADVLLLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S LGR +  K +R     DL++ V GCVA  EGE I  R+P V++V GPQT +RLP++L+
Sbjct: 61  SQLGRWKPWKQAR----PDLVIGVGGCVASQEGEAIRTRAPYVDLVFGPQTLHRLPQMLK 116

Query: 142 RARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
                +R  VD  +   +KF+ L        R  G TAF+++ EGC K+CT+CVVPYTRG
Sbjct: 117 DLESSRRPQVDVSFPEIEKFDCLPA-----PRAEGPTAFVSVMEGCSKYCTYCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            EISR    V+ E   L + GV EI LLGQNVNA+RG   DG   + + L+  ++ ++G+
Sbjct: 172 EEISRPFDDVIAEVADLAEQGVREINLLGQNVNAYRGLMADGSTASLALLIRYVAAVEGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+TTSHP +  D LI+   ++  L  ++HLPVQSGSDRIL +M R HTA EYR  I 
Sbjct: 232 GRIRFTTSHPVEFGDDLIETFAEVPELASFVHLPVQSGSDRILAAMKRGHTALEYRCKIK 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           R+R  RPDI ISSDFIVGFP ETD DF AT+DL+D++G+  +FSF YS R GTP ++  +
Sbjct: 292 RLREARPDICISSDFIVGFPNETDADFDATIDLIDQVGFDHSFSFVYSRRPGTPAADYPD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVV 439
            V   VK  RL  LQ+++       +   VG +  VL+E    K+  +L GR+   + V 
Sbjct: 352 AVPLEVKKARLERLQQRIDTNAQRISRQMVGTVQRVLVEGPSRKDPAQLAGRTENNRVVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
            +     IG  + + IT+   ++L G+L 
Sbjct: 412 FDGPAELIGQFVDLTITESLPNSLRGQLA 440


>gi|254429447|ref|ZP_05043154.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Alcanivorax sp. DG881]
 gi|196195616|gb|EDX90575.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Alcanivorax sp. DG881]
          Length = 445

 Score =  373 bits (958), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 196/447 (43%), Positives = 288/447 (64%), Gaps = 17/447 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ F++++GCQMN YDS RM D+   S G E  ++ ++AD+++LNTC IREKA EKV+  
Sbjct: 3   RKLFIQTHGCQMNEYDSTRMVDLLESSHGLESTDNPEEADVLLLNTCSIREKAQEKVFHQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK+++     D+++ V GCVA  EG+ I  R+P V+VV GPQT +RLP L+ +A
Sbjct: 63  LGRWKKLKDAK----PDMIIGVGGCVASQEGDAIRDRAPYVDVVFGPQTLHRLPGLITQA 118

Query: 144 RFGKRV-VDTDYSVEDKFERLS--IVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
              + + +D  +   +KF+ L    VDG        +AF++I EGC K+CTFCVVPYTRG
Sbjct: 119 ASTRELAIDVTFPEIEKFDNLPEPSVDGP-------SAFVSIMEGCSKYCTFCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR +  V+ E + L D GV E+ LLGQNVNA++G G DG+    +DL+  + +I G+
Sbjct: 172 EEVSRPVQPVLSEIQHLADMGVREVNLLGQNVNAYQGVGADGDTLDLADLIRLIRDIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+RYTTSHP + SD LI+ + D+  L+ +LHLPVQSGSDRIL  M R H   EY+  + 
Sbjct: 232 DRIRYTTSHPVEFSDALIQVYEDVPELVSHLHLPVQSGSDRILAMMKRNHMVLEYKSKLR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           +++ +RPDI+ SSDFI+GFPGETD DF  TMDL+  IG+  +FSF YS R GTP +++ +
Sbjct: 292 KLKRIRPDISFSSDFIIGFPGETDRDFEDTMDLIHDIGFDMSFSFIYSARPGTPAADLPD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVV 439
            VD +VK +RL  LQ+++ +     +   VG    +L++    K+ G+L GR+   + V 
Sbjct: 352 DVDMDVKKQRLAILQQRINQNAQDISRKMVGSTQRILVDGFSKKDPGQLKGRTENNRVVN 411

Query: 440 LNSKNHN-IGDIIKVRITDVKISTLYG 465
               + + IG  + V I     ++L G
Sbjct: 412 FQCDDTDLIGQFVDVTIAQAYSNSLLG 438


>gi|300310058|ref|YP_003774150.1| tRNA modifying 2-methylthioadenine synthetase [Herbaspirillum
           seropedicae SmR1]
 gi|300072843|gb|ADJ62242.1| tRNA modifying 2-methylthioadenine synthetase protein
           [Herbaspirillum seropedicae SmR1]
          Length = 446

 Score =  373 bits (958), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 201/451 (44%), Positives = 284/451 (62%), Gaps = 15/451 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ F+K++GCQMN YDS +M D+   S G  + +  ++AD+I+LNTC IREKA EKV+S 
Sbjct: 3   KKVFIKTFGCQMNEYDSDKMADVLNASDGLIKTDRPEEADVILLNTCSIREKAQEKVFSD 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR+R LK    K    LL+ V GCVA  EGE I++R+P V++V GPQT +RLP+++   
Sbjct: 63  LGRLRALK----KNNPALLIGVGGCVASQEGEAIIKRAPFVDMVFGPQTLHRLPQMISER 118

Query: 144 RF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           R+ G+  VD  +   +KF+ L        R  G TA+++I EGC K+C++CVVPYTRG E
Sbjct: 119 RYSGRPQVDISFPEIEKFDHLPPA-----RVEGATAYVSIMEGCSKYCSYCVVPYTRGEE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR    V+ E   L D GV EI LLGQNVNA+RG   DGE   F+ L+  ++E+ G+ R
Sbjct: 174 VSRRFEDVLTEVAGLADQGVKEIMLLGQNVNAYRGVMEDGEIADFALLIEYIAELPGIER 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+ TSHP++ S  LI  +  +  L  +L+LP Q GSDR L +M R +TA EY+ +I R+
Sbjct: 234 IRFVTSHPKEFSQRLIDTYAKVPKLCNHLYLPAQHGSDRTLAAMKRGYTALEYKSVIRRM 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R VRPDI + SDFIVGFPGET++DF A M LV  +G+  +FSF +S R GTP +N+ +  
Sbjct: 294 RKVRPDITVQSDFIVGFPGETEEDFEALMKLVADVGFDNSFSFIFSARPGTPAANLPDDT 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441
            + VK  RL  LQ  L +     + A VG +  VL+E   K +  +L GR+   + V  +
Sbjct: 354 PQEVKLARLQRLQAALNDNAARISAAQVGTVQRVLVEGVSKRREHELQGRTESNRVVNFD 413

Query: 442 SKNHN---IGDIIKVRITDVKISTLYGELVV 469
              +    IG II+V IT+    +L GE+V 
Sbjct: 414 GGPNGQRLIGQIIEVSITEAFPFSLRGEIVT 444


>gi|260549787|ref|ZP_05824003.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Acinetobacter sp.
           RUH2624]
 gi|260407037|gb|EEX00514.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Acinetobacter sp.
           RUH2624]
          Length = 483

 Score =  373 bits (958), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 197/455 (43%), Positives = 296/455 (65%), Gaps = 20/455 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ ++++ GCQMN YDS RM D+   S GY    + ++AD++++NTC IREKA EKV+S 
Sbjct: 31  KKLYIETQGCQMNEYDSHRMADLLGDSHGYVLTTNPNEADILLMNTCSIREKAQEKVFSE 90

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER- 142
           LGR R LK    ++  DL++ V GCVA  EG+ I +R+P V+++ GPQT +RLP++L++ 
Sbjct: 91  LGRWRKLK----EQNPDLVIGVGGCVASQEGDNIQKRAPYVDMIFGPQTLHRLPQMLDQH 146

Query: 143 -ARFGK------RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
            A+  K      ++VD  +   +KF+ L        R  G  AF++I EGC K+C+FCVV
Sbjct: 147 HAQVEKPKKEKIKLVDISFPDIEKFDFLP-----EPRVEGFKAFVSIMEGCSKYCSFCVV 201

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
           PYTRG E+SR L  V+ E   L + GV EI+LLGQNVN +RG+  +G  CTF +LL  ++
Sbjct: 202 PYTRGEEVSRPLDDVLAEIAGLAEKGVREISLLGQNVNGYRGETFEGGICTFPELLRLVA 261

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
           EI G+ RLRYTTSHP + SD LI+ + DL  ++ +LHLPVQSGS+ +LK+M R HT   Y
Sbjct: 262 EIPGIGRLRYTTSHPLEFSDELIQCYEDLPQMVSHLHLPVQSGSNDVLKAMKRNHTIDVY 321

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
              I ++R +RPD+ +SSDFI+GFPGETD++F  T+  +  + +  ++SF YS R GTP 
Sbjct: 322 IDKIAKLRKIRPDMHLSSDFIIGFPGETDENFAETLQFIKDLDFDHSYSFVYSKRPGTPA 381

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPW 434
           S++ +   E+VK ERL  +Q+ +++  +   DA +G+I  VLIEK   ++   LVG +  
Sbjct: 382 SDLPDTTPEHVKKERLAQVQQVIKQSSIEKTDAMLGKIERVLIEKVSDQDPNILVGTADN 441

Query: 435 LQSVVLNSKNHNIGDIIKVRITDVK-ISTLYGELV 468
            + V        +G   ++ IT++K ++ +YGEL+
Sbjct: 442 TRLVTFVGDASWVGRFAEIEITEIKTLNLVYGELL 476


>gi|53718317|ref|YP_107303.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Burkholderia
           pseudomallei K96243]
 gi|53724681|ref|YP_102060.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Burkholderia
           mallei ATCC 23344]
 gi|121600987|ref|YP_994016.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia mallei
           SAVP1]
 gi|124383869|ref|YP_001028320.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia mallei NCTC
           10229]
 gi|126439490|ref|YP_001057762.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia pseudomallei
           668]
 gi|126448080|ref|YP_001081964.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia mallei NCTC
           10247]
 gi|126453332|ref|YP_001065006.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia pseudomallei
           1106a]
 gi|134279698|ref|ZP_01766410.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia pseudomallei
           305]
 gi|167737215|ref|ZP_02409989.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia pseudomallei
           14]
 gi|167814345|ref|ZP_02446025.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia pseudomallei
           91]
 gi|167844396|ref|ZP_02469904.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia pseudomallei
           B7210]
 gi|167892910|ref|ZP_02480312.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia pseudomallei
           7894]
 gi|167901395|ref|ZP_02488600.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia pseudomallei
           NCTC 13177]
 gi|167917639|ref|ZP_02504730.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia pseudomallei
           BCC215]
 gi|217419549|ref|ZP_03451055.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia pseudomallei
           576]
 gi|237810913|ref|YP_002895364.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Burkholderia pseudomallei
           MSHR346]
 gi|238562538|ref|ZP_00440245.2| tRNA-I(6)A37 thiotransferase enzyme MiaB [Burkholderia mallei GB8
           horse 4]
 gi|242314327|ref|ZP_04813343.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia pseudomallei
           1106b]
 gi|254177145|ref|ZP_04883802.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia mallei ATCC
           10399]
 gi|254181739|ref|ZP_04888336.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia pseudomallei
           1655]
 gi|254187671|ref|ZP_04894183.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254196370|ref|ZP_04902794.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia pseudomallei
           S13]
 gi|254203744|ref|ZP_04910104.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia mallei FMH]
 gi|254208720|ref|ZP_04915068.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia mallei JHU]
 gi|254296218|ref|ZP_04963675.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia pseudomallei
           406e]
 gi|254360228|ref|ZP_04976498.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia mallei
           2002721280]
 gi|81380370|sp|Q63X63|MIAB_BURPS RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|81605634|sp|Q62MK8|MIAB_BURMA RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|229890460|sp|A3MNX8|MIAB_BURM7 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|229890461|sp|A2S8Q1|MIAB_BURM9 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|229890462|sp|A1V713|MIAB_BURMS RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|229890463|sp|A3NRN5|MIAB_BURP0 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|229890464|sp|A3N5Z1|MIAB_BURP6 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|52208731|emb|CAH34667.1| putative tRNA thiotransferase protein MiaB [Burkholderia
           pseudomallei K96243]
 gi|52428104|gb|AAU48697.1| tRNA-i(6)A37 modification enzyme MiaB [Burkholderia mallei ATCC
           23344]
 gi|121229797|gb|ABM52315.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia mallei
           SAVP1]
 gi|124291889|gb|ABN01158.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia mallei NCTC
           10229]
 gi|126218983|gb|ABN82489.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia pseudomallei
           668]
 gi|126226974|gb|ABN90514.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia pseudomallei
           1106a]
 gi|126240950|gb|ABO04043.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia mallei NCTC
           10247]
 gi|134248898|gb|EBA48980.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia pseudomallei
           305]
 gi|147745256|gb|EDK52336.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia mallei FMH]
 gi|147750596|gb|EDK57665.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia mallei JHU]
 gi|148029468|gb|EDK87373.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia mallei
           2002721280]
 gi|157806026|gb|EDO83196.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia pseudomallei
           406e]
 gi|157935351|gb|EDO91021.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia pseudomallei
           Pasteur 52237]
 gi|160698186|gb|EDP88156.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia mallei ATCC
           10399]
 gi|169653113|gb|EDS85806.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia pseudomallei
           S13]
 gi|184212277|gb|EDU09320.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia pseudomallei
           1655]
 gi|217396853|gb|EEC36869.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia pseudomallei
           576]
 gi|237505165|gb|ACQ97483.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Burkholderia pseudomallei
           MSHR346]
 gi|238522408|gb|EEP85852.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Burkholderia mallei GB8
           horse 4]
 gi|242137566|gb|EES23968.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia pseudomallei
           1106b]
          Length = 457

 Score =  373 bits (957), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 194/454 (42%), Positives = 292/454 (64%), Gaps = 18/454 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ +VK++GCQMN YDS +M D+   ++G E+ ++ +DAD+I+ NTC +REKA EKV+S 
Sbjct: 3   KKVYVKTFGCQMNEYDSDKMVDVLNAAEGLEKTDTPEDADIILFNTCSVREKAQEKVFSD 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE-R 142
           LGR+R LK ++     DLL+ V GCVA  EG  I+ R+P V++V GPQT +RLP++++ R
Sbjct: 63  LGRVRELKEAK----PDLLIGVGGCVASQEGASIVARAPYVDLVFGPQTLHRLPQMIDAR 118

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
              G+  VD  +   +KF+ L        R  G +AF++I EGC K+C++CVVPYTRG E
Sbjct: 119 RESGRAQVDITFPEIEKFDHLPPA-----RVEGPSAFVSIMEGCSKYCSYCVVPYTRGDE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG--EKCTFSDLLYSLSEIKGL 260
           +SR L  V+ E   L D GV E+TLLGQNVNA+RG    G  E   F+ L+  +++I G+
Sbjct: 174 VSRPLDDVLTEVAGLADQGVREVTLLGQNVNAYRGAIAAGSAEIADFATLIEYVADIPGI 233

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+RYTTSHP++ +  L+  +  +  L+ +LHLPVQ GSDRIL +M R +T  EY+ +I 
Sbjct: 234 ERIRYTTSHPKEFTQRLLDVYAKVPKLVDHLHLPVQHGSDRILMAMKRGYTVLEYKSVIR 293

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R++RP++++S+D IVGFPGETD DF  TM LV ++ Y  +FSF YSPR GTP +N+ +
Sbjct: 294 KLRAIRPNLSLSTDIIVGFPGETDADFDKTMALVHEMSYDTSFSFIYSPRPGTPAANLAD 353

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVV 439
                +K +RL  LQ  + E     + + +G++  +L+E    K+  +L GR+   + V 
Sbjct: 354 DTPRELKLKRLQHLQATIEENVARISQSMLGKVERILVEGPSRKDPNELAGRTENNRVVN 413

Query: 440 LNSKNHN----IGDIIKVRITDVKISTLYGELVV 469
             + +      IG +I V+I      +L GELV+
Sbjct: 414 FPAPSAAHPRLIGQMIDVKINHAYPHSLRGELVL 447


>gi|167718182|ref|ZP_02401418.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia pseudomallei
           DM98]
          Length = 457

 Score =  373 bits (957), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 194/454 (42%), Positives = 292/454 (64%), Gaps = 18/454 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ +VK++GCQMN YDS +M D+   ++G E+ ++ +DAD+I+ NTC +REKA EKV+S 
Sbjct: 3   KKVYVKTFGCQMNEYDSDKMVDVLNAAEGLEKTDTPEDADIILFNTCSVREKAQEKVFSD 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE-R 142
           LGR+R LK ++     DLL+ V GCVA  EG  I+ R+P V++V GPQT +RLP++++ R
Sbjct: 63  LGRVRELKEAK----PDLLIGVGGCVASQEGASIVARAPYVDLVFGPQTLHRLPQMIDAR 118

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
              G+  VD  +   +KF+ L        R  G +AF++I EGC K+C++CVVPYTRG E
Sbjct: 119 RESGRAQVDITFPEIEKFDHLPPA-----RVEGPSAFVSIMEGCSKYCSYCVVPYTRGDE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG--EKCTFSDLLYSLSEIKGL 260
           +SR L  V+ E   L D GV E+TLLGQNVNA+RG    G  E   F+ L+  +++I G+
Sbjct: 174 VSRPLDDVLTEVAGLADQGVREVTLLGQNVNAYRGAIAAGSAEIADFATLIEYVADIPGI 233

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+RYTTSHP++ +  L+  +  +  L+ +LHLPVQ GSDRIL +M R +T  EY+ +I 
Sbjct: 234 ERIRYTTSHPKEFTQRLLDVYAKVPKLVDHLHLPVQHGSDRILMAMKRGYTVLEYKSVIR 293

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R++RP++++S+D IVGFPGETD DF  TM LV ++ Y  +FSF YSPR GTP +N+ +
Sbjct: 294 KLRAIRPNLSLSTDIIVGFPGETDADFDKTMALVHEMSYDTSFSFIYSPRPGTPAANLAD 353

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVV 439
                +K +RL  LQ  + E     + + +G++  +L+E    K+  +L GR+   + V 
Sbjct: 354 DTPRELKLKRLQHLQATIEENVARISQSMLGKVERILVEGPSRKDPNELAGRTENNRVVN 413

Query: 440 LNSKNHN----IGDIIKVRITDVKISTLYGELVV 469
             + +      IG +I V+I      +L GELV+
Sbjct: 414 FPAPSAAHPRLIGQMIDVKINHAYPHSLRGELVL 447


>gi|91228826|ref|ZP_01262733.1| hypothetical protein V12G01_00185 [Vibrio alginolyticus 12G01]
 gi|269965463|ref|ZP_06179582.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
 gi|91187631|gb|EAS73956.1| hypothetical protein V12G01_00185 [Vibrio alginolyticus 12G01]
 gi|269829942|gb|EEZ84172.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
          Length = 474

 Score =  373 bits (957), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 202/447 (45%), Positives = 288/447 (64%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS +M D+   + GYE     ++AD+++LNTC IREKA EKV+  
Sbjct: 3   KKLLIKTWGCQMNEYDSSKMADLLNAANGYELTEEPEEADVLLLNTCSIREKAQEKVFHQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK+ +      +++ V GCVA  EG+ I  R+P V+V+ GPQT +RLPE+++++
Sbjct: 63  LGRWKTLKDKK----PGVVIGVGGCVATQEGDHIRERAPYVDVIFGPQTLHRLPEMIKQS 118

Query: 144 RFG-KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           +     V+D  +   +KF+RL        R  G TAF++I EGC K+CT+CVVPYTRG E
Sbjct: 119 QSDDAPVMDISFPEIEKFDRLP-----EPRAEGATAFVSIMEGCSKYCTYCVVPYTRGEE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR +  V+ E  +L + GV E+ LLGQNVNA+RG   DGE C+F++LL  ++ I G+ R
Sbjct: 174 VSRPMDDVLFEIAQLAEQGVREVNLLGQNVNAYRGPMHDGEICSFAELLRLVASIDGIDR 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP + +D +I  + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II ++
Sbjct: 234 IRFTTSHPLEFTDDIIAVYEDTPELVSFLHLPVQSGSDRILTMMKRPHTAIEYKSIIRKL 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R  RPDI ISSDFIVGFPGETD DF+ TM L+  + +  +FSF +SPR GTP ++    V
Sbjct: 294 RKARPDIQISSDFIVGFPGETDKDFQDTMKLIKDVDFDMSFSFIFSPRPGTPAADYPCDV 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441
            E VK ERL  LQ+ +  Q + ++   +G    VL+E   K+   +L  R+   + V   
Sbjct: 354 SEQVKKERLYELQQTINAQAMRYSRLMLGTEQRVLVEGPSKKNLMELRARTENNRVVNFE 413

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                IG  + V+I DV  ++L GELV
Sbjct: 414 GSADLIGQFVDVKIVDVFANSLRGELV 440


>gi|307730932|ref|YP_003908156.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia sp.
           CCGE1003]
 gi|307585467|gb|ADN58865.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia sp.
           CCGE1003]
          Length = 461

 Score =  373 bits (957), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 196/454 (43%), Positives = 293/454 (64%), Gaps = 18/454 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ +VK++GCQMN YDS +M D+   ++G  + ++ +DAD+I+ NTC +REKA EKV+S 
Sbjct: 3   KKVYVKTFGCQMNEYDSDKMVDVLGAAEGLVKTDTPEDADVILFNTCSVREKAQEKVFSD 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR+R LK +      DL++ V GCVA  EG  I+ R+P V++V GPQT +RLP+++++ 
Sbjct: 63  LGRVRELKEA----NPDLIIGVGGCVASQEGASIVARAPYVDLVFGPQTLHRLPQMIDKR 118

Query: 144 RF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           R  G+  VD  +   +KF+ L        R  G +AF++I EGC K+C++CVVPYTRG E
Sbjct: 119 RASGRAQVDITFPEIEKFDHLPPA-----RVEGPSAFVSIMEGCSKYCSYCVVPYTRGEE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG--EKCTFSDLLYSLSEIKGL 260
           +SR L  V+ E   L D GV E+TLLGQNVNA+RG    G  E   F+ L+  ++EI G+
Sbjct: 174 VSRPLDDVLTEIAGLADQGVREVTLLGQNVNAFRGALTLGSSEIADFATLIEYVAEIPGI 233

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+RYTTSHP++ +  LI  +  +  L+ +LHLPVQ GSDRIL +M R +T  EY+ +I 
Sbjct: 234 ERIRYTTSHPKEFTQRLIDTYAKVPKLVSHLHLPVQHGSDRILMAMKRGYTVLEYKSVIR 293

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R++RPD+++S+D IVGFPGET++DF   M LV ++ Y  +FSF YSPR GTP +N+ +
Sbjct: 294 KLRAIRPDLSLSTDMIVGFPGETEEDFDKMMALVHEMKYDTSFSFIYSPRPGTPAANLPD 353

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSV- 438
                VK +RL  LQ  + E     +D+ VG++  +L+E+   K+  +L GR+   + V 
Sbjct: 354 DTPREVKLKRLQHLQATIEENVQRISDSMVGKVERILVERPARKDPNELAGRTENNRVVN 413

Query: 439 ---VLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
               + S    IG ++ V+I      +L GELV+
Sbjct: 414 FPAPVASHARLIGQMVDVKIVKAYPHSLRGELVL 447


>gi|325524861|gb|EGD02810.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Burkholderia
           sp. TJI49]
          Length = 457

 Score =  373 bits (957), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 199/454 (43%), Positives = 291/454 (64%), Gaps = 18/454 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ +VK++GCQMN YDS +M D+   ++G E+ ++ +DAD+I+ NTC +REKA EKV+S 
Sbjct: 3   KKVYVKTFGCQMNEYDSDKMVDVLNAAEGLEKTDTPEDADIILFNTCSVREKAQEKVFSD 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR+R LK +  K G  LL+ V GCVA  EG  I+ R+P V++V GPQT +RLP++++  
Sbjct: 63  LGRVRELKEA--KPG--LLIGVGGCVASQEGASIVSRAPYVDLVFGPQTLHRLPQMIDAR 118

Query: 144 RF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           R  G+  VD  +   +KF+ L        R  G +AF++I EGC K+C++CVVPYTRG E
Sbjct: 119 RASGRAQVDITFPEIEKFDHLPPA-----RVEGPSAFVSIMEGCSKYCSYCVVPYTRGDE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG--EKCTFSDLLYSLSEIKGL 260
           +SR L  V+ E   L D GV E+TLLGQNVNA+RG    G  E   F+ L+  +++I G+
Sbjct: 174 VSRPLDDVLTEVAGLADQGVREVTLLGQNVNAYRGALTAGSSEIADFATLIEYVADIPGI 233

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+RYTTSHP++ +  LI  +  +  L+ +LHLPVQ GSDRIL +M R +T  EY+ +I 
Sbjct: 234 ERIRYTTSHPKEFTQRLIDTYAKVPKLVNHLHLPVQHGSDRILMAMKRGYTVLEYKSVIR 293

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R++RPD+++S+D IVGFPGET++DF   M LV  + Y  +FSF YSPR GTP +N+ +
Sbjct: 294 KLRAIRPDLSLSTDMIVGFPGETEEDFDKMMALVHDMSYDTSFSFIYSPRPGTPAANLHD 353

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSV- 438
                VK +RL  LQ  + E     + + VG++  +L+E    K+  +L GR+   + V 
Sbjct: 354 DTPREVKLKRLQHLQATIEENVARISQSMVGKVERILVEGPSRKDPNELAGRTENNRVVN 413

Query: 439 ---VLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
               L S    IG +I V+I      +L GELV+
Sbjct: 414 FPAPLASHPRLIGQMIDVKINHAYPHSLRGELVL 447


>gi|209517500|ref|ZP_03266340.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia sp. H160]
 gi|209502033|gb|EEA02049.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia sp. H160]
          Length = 461

 Score =  373 bits (957), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 197/458 (43%), Positives = 295/458 (64%), Gaps = 22/458 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ +VK++GCQMN YDS +M D+   ++G  + ++ +DAD+I+ NTC +REKA EKV+S 
Sbjct: 3   KKVYVKTFGCQMNEYDSDKMVDVLGAAEGLVKTDTPEDADVILFNTCSVREKAQEKVFSE 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE-R 142
           LGR+R LK++      DL++ V GCVA  EG  I+ R+P V++V GPQT +RLP++++ R
Sbjct: 63  LGRVRELKDA----NPDLIIGVGGCVASQEGASIVARAPYVDIVFGPQTLHRLPQMIDVR 118

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
              G+  VD  +   +KF+ L        R  G +AF++I EGC K+C++CVVPYTRG E
Sbjct: 119 RASGRAQVDISFPEIEKFDHLPPA-----RVEGPSAFVSIMEGCSKYCSYCVVPYTRGEE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK--GL----DGEKCTFSDLLYSLSE 256
           +SR L  V+ E   L D GV E+TLLGQNVNA+RGK  G       E   F+ L+  +++
Sbjct: 174 VSRPLDDVLTEIAGLADQGVREVTLLGQNVNAYRGKFGGALTIGSTEIADFATLIEYVAD 233

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           I G+ R+RYTTSHP++ +  LI  +  +  L+ +LHLPVQ GSDRIL +M R +T  EY+
Sbjct: 234 IPGIERIRYTTSHPKEFTQRLIDTYAKVPKLVSHLHLPVQHGSDRILMAMKRGYTVLEYK 293

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
            +I ++R++RPD+++S+D IVGFPGETD+DF   M LV+++ Y  +FSF YSPR GTP +
Sbjct: 294 SVIRKLRAIRPDLSLSTDMIVGFPGETDEDFAKMMALVEEMKYDTSFSFIYSPRPGTPAA 353

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWL 435
           N+ +     VK +RL  LQ  + E     ++A VG++  +L+E+   K+  +L GR+   
Sbjct: 354 NLHDDTPREVKLKRLQHLQATIEENVQRISNAMVGKVERILVERPARKDPNELAGRTENN 413

Query: 436 QSV----VLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
           + V     + S    IG ++ V+I      +L GELV+
Sbjct: 414 RVVNFPAPVASHARLIGQMVDVKIVHAYPHSLRGELVM 451


>gi|167909625|ref|ZP_02496716.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia pseudomallei
           112]
          Length = 457

 Score =  372 bits (956), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 194/454 (42%), Positives = 292/454 (64%), Gaps = 18/454 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ +VK++GCQMN YDS +M D+   ++G E+ ++ +DAD+I+ NTC +REKA EKV+S 
Sbjct: 3   KKVYVKTFGCQMNEYDSDKMVDVLNAAEGLEKTDTPEDADIILFNTCSVREKAQEKVFSD 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE-R 142
           LGR+R LK ++     DLL+ V GCVA  EG  I+ R+P V++V GPQT +RLP++++ R
Sbjct: 63  LGRMRELKEAK----PDLLIGVGGCVASQEGASIVARAPYVDLVFGPQTLHRLPQMIDAR 118

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
              G+  VD  +   +KF+ L        R  G +AF++I EGC K+C++CVVPYTRG E
Sbjct: 119 RESGRAQVDITFPEIEKFDHLPPA-----RVEGPSAFVSIMEGCSKYCSYCVVPYTRGDE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG--EKCTFSDLLYSLSEIKGL 260
           +SR L  V+ E   L D GV E+TLLGQNVNA+RG    G  E   F+ L+  +++I G+
Sbjct: 174 VSRPLDDVLTEVAGLADQGVREVTLLGQNVNAYRGAIAAGSAEIADFATLIEYVADIPGI 233

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+RYTTSHP++ +  L+  +  +  L+ +LHLPVQ GSDRIL +M R +T  EY+ +I 
Sbjct: 234 ERIRYTTSHPKEFTQRLLDVYAKVPKLVDHLHLPVQHGSDRILMAMKRGYTVLEYKSVIR 293

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R++RP++++S+D IVGFPGETD DF  TM LV ++ Y  +FSF YSPR GTP +N+ +
Sbjct: 294 KLRAIRPNLSLSTDIIVGFPGETDADFDKTMALVHEMSYDTSFSFIYSPRPGTPAANLAD 353

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVV 439
                +K +RL  LQ  + E     + + +G++  +L+E    K+  +L GR+   + V 
Sbjct: 354 DTPRELKLKRLQHLQATIEENVARISQSMLGKVERILVEGPSRKDPNELAGRTENNRVVN 413

Query: 440 LNSKNHN----IGDIIKVRITDVKISTLYGELVV 469
             + +      IG +I V+I      +L GELV+
Sbjct: 414 FPAPSAAHPRLIGQMIDVKINHAYPHSLRGELVL 447


>gi|28897507|ref|NP_797112.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|260363858|ref|ZP_05776610.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Vibrio parahaemolyticus
           K5030]
 gi|260898985|ref|ZP_05907426.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Vibrio parahaemolyticus
           Peru-466]
 gi|260900745|ref|ZP_05909140.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Vibrio parahaemolyticus
           AQ4037]
 gi|81728328|sp|Q87RP4|MIAB_VIBPA RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|28805719|dbj|BAC58996.1| conserved hypothetical protein [Vibrio parahaemolyticus RIMD
           2210633]
 gi|308087476|gb|EFO37171.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Vibrio parahaemolyticus
           Peru-466]
 gi|308108999|gb|EFO46539.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Vibrio parahaemolyticus
           AQ4037]
 gi|308114637|gb|EFO52177.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Vibrio parahaemolyticus
           K5030]
          Length = 474

 Score =  372 bits (956), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 201/447 (44%), Positives = 288/447 (64%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS +M D+   + GYE     ++AD+++LNTC IREKA EKV+  
Sbjct: 3   KKLLIKTWGCQMNEYDSSKMADLLNAANGYELTEEPEEADVLLLNTCSIREKAQEKVFHQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK+ +      +++ V GCVA  EG+ I  R+P V+V+ GPQT +RLPE+++++
Sbjct: 63  LGRWKTLKDKK----PGVVIGVGGCVATQEGDHIRERAPYVDVIFGPQTLHRLPEMIKQS 118

Query: 144 RFG-KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           +     V+D  +   +KF+RL        R  G TAF++I EGC K+CT+CVVPYTRG E
Sbjct: 119 QTDDAPVMDISFPEIEKFDRLP-----EPRAEGATAFVSIMEGCSKYCTYCVVPYTRGEE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR +  V+ E  +L + GV E+ LLGQNVNA+RG   DGE C+F++LL  ++ I G+ R
Sbjct: 174 VSRPMDDVLFEIAQLAEQGVREVNLLGQNVNAYRGPMHDGEICSFAELLRLVASIDGIDR 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP + +D +I  + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II ++
Sbjct: 234 IRFTTSHPLEFTDDIIAVYEDTPELVSFLHLPVQSGSDRILTMMKRPHTAIEYKSIIRKL 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R  RPDI ISSDFIVGFPGETD DF+ TM L+  + +  +FSF +SPR GTP ++    +
Sbjct: 294 RKARPDIQISSDFIVGFPGETDKDFQDTMKLIKDVDFDMSFSFIFSPRPGTPAADYPCDI 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441
            E VK ERL  LQ+ +  Q + ++   +     VL+E   K+   +L  R+   + V   
Sbjct: 354 PEQVKKERLYELQQTINAQAMRYSRLMLATEQRVLVEGPSKKNLMELRARTENNRVVNFE 413

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                IG  + V+ITDV  ++L GELV
Sbjct: 414 GSADLIGQFVDVKITDVFANSLRGELV 440


>gi|50120258|ref|YP_049425.1| hypothetical protein ECA1319 [Pectobacterium atrosepticum SCRI1043]
 gi|81645754|sp|Q6D7K6|MIAB_ERWCT RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|49610784|emb|CAG74229.1| conserved hypothetical protein [Pectobacterium atrosepticum
           SCRI1043]
          Length = 474

 Score =  372 bits (956), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 198/448 (44%), Positives = 285/448 (63%), Gaps = 14/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS +M D+  S  GYE     ++AD+++LNTC IREKA EKV+  
Sbjct: 3   KKLHIKTWGCQMNEYDSSKMADLLGSTHGYELTEIAEEADVLLLNTCSIREKAQEKVFHQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK+       +L++ V GCVA  EG  I  R+  V+V+ GPQT +RLPE++   
Sbjct: 63  LGRWKALKDL----NPNLIIGVGGCVASQEGAHIRERAHYVDVIFGPQTLHRLPEMINHV 118

Query: 144 RFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           + G R  +VD  +   +KF+RL        R  G TAF++I EGC+K+CTFCVVPYTRG 
Sbjct: 119 Q-GTRSPIVDISFPEIEKFDRLP-----EPRADGPTAFVSIMEGCNKYCTFCVVPYTRGE 172

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E+SR    V+ E  +L   GV E+ LLGQNVNA+RG+  DGE C+F++LL  ++ I G+ 
Sbjct: 173 EVSRPCDDVLFEIAQLAAQGVREVNLLGQNVNAYRGETYDGEICSFAELLRLVAAIDGID 232

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHP + +D +I  + D   L+ +LHLPVQSGSDR+L  M RRHTA EY+ II +
Sbjct: 233 RVRFTTSHPIEFTDDIISVYEDTPELVSFLHLPVQSGSDRVLTMMKRRHTALEYKAIIRK 292

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           + + RP I ISSDFI+GFPGET  DF  TM L+  + +  ++SF YS R GTP ++M++ 
Sbjct: 293 LHNARPGILISSDFIIGFPGETQADFEQTMKLIADVNFDMSYSFVYSARPGTPAADMVDD 352

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVL 440
           V E  K +RL  LQ ++ +Q + F+   +G +  +L+E   ++   +L GR+   + V  
Sbjct: 353 VLEEEKKQRLYLLQDRITKQAMRFSRLMLGTVQRILVEGTSRKSVMELSGRTENNRVVNF 412

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 IG  + V I DV  ++L G +V
Sbjct: 413 EGTPDMIGKFVDVEIVDVYTNSLRGIVV 440


>gi|262280174|ref|ZP_06057958.1| tRNA-I(6)A37 thiotransferase [Acinetobacter calcoaceticus RUH2202]
 gi|262257952|gb|EEY76686.1| tRNA-I(6)A37 thiotransferase [Acinetobacter calcoaceticus RUH2202]
          Length = 483

 Score =  372 bits (956), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 197/455 (43%), Positives = 295/455 (64%), Gaps = 20/455 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ ++++ GCQMN YDS RM D+   S GY   ++ ++AD++++NTC IREKA EKV+S 
Sbjct: 31  KKLYIETQGCQMNEYDSHRMADLLGDSHGYILTSNPNEADILLMNTCSIREKAQEKVFSE 90

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL--- 140
           LGR R LK+    +  DL++ V GCVA  EG+ I +R+P V+++ GPQT +RLP++L   
Sbjct: 91  LGRWRKLKD----KNPDLVIGVGGCVASQEGDNIQKRAPYVDMIFGPQTLHRLPQMLDQH 146

Query: 141 ----ERARFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
               E+ +  K ++VD  +   +KF+ L        R  G  AF++I EGC K+C+FCVV
Sbjct: 147 NAQVEKPKKDKIKLVDISFPDIEKFDFLP-----EPRVEGFKAFVSIMEGCSKYCSFCVV 201

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
           PYTRG E+SR L  V+ E   L + GV EI+LLGQNVN +RG+  +G  CTF +LL  ++
Sbjct: 202 PYTRGEEVSRPLDDVLAEIAGLAEKGVREISLLGQNVNGYRGETFEGGICTFPELLRLVA 261

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
           EI G+ RLRYTTSHP + SD LI+ + DL  ++ +LHLPVQSGS+ +LK+M R HT   Y
Sbjct: 262 EIPGIGRLRYTTSHPLEFSDELIQCYEDLPQMVSHLHLPVQSGSNDVLKAMKRNHTIDVY 321

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
              I ++R +RPD+ +SSDFI+GFPGETD++F  T+  +  + +  ++SF YS R GTP 
Sbjct: 322 IDKIAKLRKIRPDMHLSSDFIIGFPGETDENFAETLQFIKDLDFDHSYSFVYSKRPGTPA 381

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPW 434
           S++ +   E VK ERL  +QK +++  +   DA +G+I  VLIEK   ++   L+G +  
Sbjct: 382 SDLPDTTPEQVKKERLAQVQKVIKQSSIEKTDAMLGKIERVLIEKVSDQDPNILIGTADN 441

Query: 435 LQSVVLNSKNHNIGDIIKVRITDVK-ISTLYGELV 468
            + V        +G   ++ IT++K ++ +YGEL+
Sbjct: 442 TRLVTFVGDATWVGRFAEIEITEIKTLNFVYGELL 476


>gi|77461171|ref|YP_350678.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Pseudomonas fluorescens
           Pf0-1]
 gi|123744592|sp|Q3K6B7|MIAB_PSEPF RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|77385174|gb|ABA76687.1| conserved hypothetical protein [Pseudomonas fluorescens Pf0-1]
          Length = 442

 Score =  372 bits (956), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 197/448 (43%), Positives = 280/448 (62%), Gaps = 13/448 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ +++++GCQMN YDS RM D+    Q  E     +DAD+I+LNTC IRE+A ++VYS 
Sbjct: 3   KKLYIETHGCQMNEYDSSRMVDLLGEHQALEVTARAEDADVILLNTCSIRERAQDRVYSQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR R LK +      D+++ V GCVA  EG  I  R+P V+VV GPQT +RLPE+++ A
Sbjct: 63  LGRWRELKLA----NPDMVIAVGGCVASQEGAAIRDRAPYVDVVFGPQTLHRLPEMIDAA 118

Query: 144 RFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           R  K   VD  +   +KF+ L        R  G +A++++ EGC K+CTFCVVPYTRG E
Sbjct: 119 RISKLPQVDVSFPEIEKFDHLP-----EPRIDGPSAYVSVMEGCSKYCTFCVVPYTRGEE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR    V+ E   L +NGV E+TLLGQNVN +RG   DG     ++L+  ++ + G+ R
Sbjct: 174 VSRPFDDVIAEIIHLAENGVREVTLLGQNVNGYRGLTHDGRLADLAELIRVVAAVDGIDR 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +RYTTSHP + SD LI+AH ++  L+ +LHLPVQSGSDRIL +M R HTA EY+  + ++
Sbjct: 234 IRYTTSHPLEFSDSLIQAHAEVPELVKHLHLPVQSGSDRILAAMKRNHTALEYKSKLRKL 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+  P I ISSDFIVGFPGET+ DF  TM L+  +G+  ++SF YS R GTP +++ +  
Sbjct: 294 RAAVPGICISSDFIVGFPGETEKDFEQTMKLIADVGFDFSYSFVYSQRPGTPAADLADDT 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLN 441
            E +K ERL  LQ +L +Q    +   VG +  +L+  +  K+ G+L GR+   + V   
Sbjct: 354 PEELKKERLNALQHRLNQQGFEISRQMVGSVQRILVTDYSKKDPGELQGRTENNRIVNFR 413

Query: 442 SKNHN-IGDIIKVRITDVKISTLYGELV 468
             N   IG    V I   +  +L G L+
Sbjct: 414 CDNPTLIGQFADVHIDAAQPHSLRGSLI 441


>gi|121997684|ref|YP_001002471.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Halorhodospira halophila
           SL1]
 gi|229890553|sp|A1WVF7|MIAB_HALHL RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|121589089|gb|ABM61669.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Halorhodospira halophila
           SL1]
          Length = 474

 Score =  372 bits (956), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 203/450 (45%), Positives = 284/450 (63%), Gaps = 13/450 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQ-GYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           V +R +V++ GCQMN YD+ R+ D+  SQ G  RV+  ++ADL++LNTC +REKA EKV+
Sbjct: 19  VSERVYVETQGCQMNDYDAERLVDVLVSQAGARRVDRPEEADLLLLNTCSVREKAQEKVF 78

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S LGR R  K    ++   +L+ V GCVA  EG EILRR+P V++V GPQT +RLP++L 
Sbjct: 79  SQLGRWRRYK----QDNPTVLIGVGGCVASQEGAEILRRAPFVDLVFGPQTLHRLPQMLA 134

Query: 142 RARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           R R G    VD D+   +KF+ L        R  G TA++++ EGC K+C+FCVVPYTRG
Sbjct: 135 RRRSGASAQVDVDFPEIEKFDHLP-----QPRAEGPTAYVSVMEGCSKYCSFCVVPYTRG 189

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            EISR ++ V+ E R L + GV E+ LLGQNVNA+ G   DGE+     L+ +++ I G+
Sbjct: 190 DEISRPVADVLAEVRSLAEQGVREVNLLGQNVNAYAGALDDGERADLGLLIEAVARIPGI 249

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+TTSHP +    LI A+ D+  L  +LHLPVQSGSD ILK M R H    Y  +ID
Sbjct: 250 DRIRFTTSHPAEFHSGLIDAYRDVPELADFLHLPVQSGSDLILKLMKRGHDIAAYEALID 309

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY-AQAFSFKYSPRLGTPGSNML 379
           +IR+VRP + +++D IVGFPGET+ +F  T+ +VD++G+   AFSF YSPR GTP + + 
Sbjct: 310 QIRAVRPGLVLATDLIVGFPGETEAEFEETLAMVDRVGFDGGAFSFVYSPRPGTPAAELH 369

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSV 438
           + V E  K   L  LQ +L EQQ +   A +G    VLI+    ++  +L GR+   + V
Sbjct: 370 DGVPEADKRAWLQRLQARLHEQQSAAARALLGTRQSVLIDGPSRRDPRELSGRTSGNRVV 429

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468
                   IG   +V ITD +  +L G +V
Sbjct: 430 NFPGDPSWIGRFAEVEITDARTHSLRGRVV 459


>gi|167822821|ref|ZP_02454292.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia pseudomallei
           9]
 gi|226196667|ref|ZP_03792247.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia pseudomallei
           Pakistan 9]
 gi|225931198|gb|EEH27205.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia pseudomallei
           Pakistan 9]
          Length = 457

 Score =  372 bits (956), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 194/454 (42%), Positives = 291/454 (64%), Gaps = 18/454 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ +VK++GCQMN YDS +M D+   ++G E+ ++ +DAD+I+ NTC +REKA EKV+S 
Sbjct: 3   KKVYVKTFGCQMNEYDSDKMVDVLNAAEGLEKTDTPEDADIILFNTCSVREKAQEKVFSD 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE-R 142
           LGR+R LK ++     DLL+ V GCVA  EG  I+ R+P V++V GPQT +RLP++++ R
Sbjct: 63  LGRVRELKEAK----PDLLIGVGGCVASQEGASIVARAPYVDLVFGPQTLHRLPQMIDAR 118

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
              G+  VD  +   +KF+ L        R  G +AF++I EGC K+C++CVVPYTRG E
Sbjct: 119 RESGRAQVDITFPEIEKFDHLPPA-----RVEGPSAFVSIMEGCSKYCSYCVVPYTRGDE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG--EKCTFSDLLYSLSEIKGL 260
           +SR L  V+ E   L D GV E+TLLGQNVNA+RG    G  E   F+ L+  +++I G+
Sbjct: 174 VSRPLDDVLTEVAGLADQGVREVTLLGQNVNAYRGAIAAGSAEIADFATLIEYVADIPGI 233

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+RYTTSHP++ +  L+  +  +  L+ +LHLPVQ GSDRIL +M R +T  EY+ +I 
Sbjct: 234 ERIRYTTSHPKEFTQRLLDVYAKVPKLVDHLHLPVQHGSDRILMAMKRGYTVLEYKSVIR 293

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R++RP++++S+D IVGFPGETD DF  TM LV ++ Y  +FSF YSPR GTP +N+ +
Sbjct: 294 KLRAIRPNLSLSTDIIVGFPGETDADFDKTMALVHEMSYDTSFSFIYSPRPGTPAANLAD 353

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVV 439
                +K +RL  LQ  + E     + + +G++  +L+E    K   +L GR+   + V 
Sbjct: 354 DTPRELKLKRLQHLQATIEENVARISQSMLGKVERILVEGPSRKNPNELAGRTENNRVVN 413

Query: 440 LNSKNHN----IGDIIKVRITDVKISTLYGELVV 469
             + +      IG +I V+I      +L GELV+
Sbjct: 414 FPAPSAAHPRLIGQMIDVKINHAYPHSLRGELVL 447


>gi|309379482|emb|CBX21848.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 442

 Score =  372 bits (956), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 196/448 (43%), Positives = 281/448 (62%), Gaps = 13/448 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQ--GYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           ++ F++++GCQMN YDS +M  +   +  G E+V   DDAD+I+ NTC +REKA EKV+S
Sbjct: 2   KKVFIRTFGCQMNEYDSDKMLAVLAEEHGGIEQVTQPDDADIILFNTCSVREKAQEKVFS 61

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-E 141
            LGR+R LK    ++   L++ VAGCVA  EGE I++R+P V+VV GPQT +RLP+++ +
Sbjct: 62  DLGRVRPLK----EKNPGLIIGVAGCVASQEGENIIKRAPYVDVVFGPQTLHRLPKMIVD 117

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           +   G   VD  +   +KF+ L        R  G  AF++I EGC K+C+FCVVPYTRG 
Sbjct: 118 KETSGLSQVDISFPEIEKFDHLPPA-----RVEGGAAFVSIMEGCSKYCSFCVVPYTRGE 172

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR L+ V+ E   L   GV EI LLGQNVNA+RG+  +GE C F+ LL  + EI G+ 
Sbjct: 173 EFSRPLNDVLTEIAGLAQQGVKEINLLGQNVNAYRGEMENGEICDFATLLRIVHEIPGIE 232

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHPR+ +D +I+ + DL  L+ +LHLP+QSGSDR+L +M R +TA EY+ II +
Sbjct: 233 RMRFTTSHPREFTDSIIECYRDLPKLVSHLHLPIQSGSDRVLSAMKRGYTALEYKSIIRK 292

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R++RPD+ +SSDFIVGFPGET+ +F  T+ LV  I +  +F F YSPR GTP +N+ + 
Sbjct: 293 LRAIRPDLCLSSDFIVGFPGETEREFEQTLKLVKDIAFDLSFVFIYSPRPGTPAANLPDD 352

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSVVL 440
                K  RL  L + +  +    N   VG +   L+E    K+  +L  R+   + V  
Sbjct: 353 TPHEEKVRRLEALNEVIEAETARINQTMVGTVQRCLVEGISKKDPDQLQARTANNRVVNF 412

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 I  +I + IT     +L G+ V
Sbjct: 413 TGTPDMINQMIDLEITGAYTFSLRGKTV 440


>gi|115352797|ref|YP_774636.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Burkholderia
           ambifaria AMMD]
 gi|122322269|sp|Q0BC21|MIAB_BURCM RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|115282785|gb|ABI88302.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia ambifaria
           AMMD]
          Length = 457

 Score =  372 bits (956), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 198/454 (43%), Positives = 293/454 (64%), Gaps = 18/454 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ +VK++GCQMN YDS +M D+   ++G E+ ++ +DAD+I+ NTC +REKA EKV+S 
Sbjct: 3   KKVYVKTFGCQMNEYDSDKMVDVLNAAEGLEKTDTPEDADIILFNTCSVREKAQEKVFSD 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR+R LK +  K G  LL+ V GCVA  EG  I+ R+P V++V GPQT +RLP+++++ 
Sbjct: 63  LGRVRELKEA--KPG--LLIGVGGCVASQEGASIVSRAPYVDLVFGPQTLHRLPQMIDQR 118

Query: 144 RF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           R  G+  VD  +   +KF+ L        R  G +AF++I EGC K+C++CVVPYTRG E
Sbjct: 119 RASGRAQVDISFPEIEKFDHLPPA-----RVEGPSAFVSIMEGCSKYCSYCVVPYTRGDE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG--EKCTFSDLLYSLSEIKGL 260
           +SR L  V+ E   L D GV E+TLLGQNVNA+RG    G  E   F+ L+  +++I G+
Sbjct: 174 VSRPLDDVLTEVAGLADQGVREVTLLGQNVNAYRGALTAGSTEIADFATLIEYVADIPGI 233

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+RYTTSHP++ +  LI  +  +  L+ +LHLPVQ GSDRIL +M R +T  EY+ +I 
Sbjct: 234 ERIRYTTSHPKEFTQRLIDTYAKVPKLVSHLHLPVQHGSDRILMAMKRGYTVLEYKSVIR 293

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R++RPD+++S+D IVGFPGET++DF   M LV ++ Y  +FSF YSPR GTP +N+ +
Sbjct: 294 KLRAIRPDLSLSTDMIVGFPGETEEDFDKMMALVHEMSYDTSFSFIYSPRPGTPAANLHD 353

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSV- 438
                VK +RL  LQ  + E     + + VG++  +L+E    K+  +L GR+   + V 
Sbjct: 354 DTPREVKLKRLQHLQATIEENVARISRSMVGKVERILVEGPSRKDPNELSGRTENNRVVN 413

Query: 439 ---VLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
               L S    IG +I V+I      +L GEL++
Sbjct: 414 FPAPLASHPRLIGQMIDVKINHAYPHSLRGELLL 447


>gi|170698977|ref|ZP_02890035.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia ambifaria
           IOP40-10]
 gi|170136084|gb|EDT04354.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia ambifaria
           IOP40-10]
          Length = 457

 Score =  372 bits (956), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 198/454 (43%), Positives = 293/454 (64%), Gaps = 18/454 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ +VK++GCQMN YDS +M D+   ++G E+ ++ +DAD+I+ NTC +REKA EKV+S 
Sbjct: 3   KKVYVKTFGCQMNEYDSDKMVDVLNAAEGLEKTDTPEDADIILFNTCSVREKAQEKVFSD 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR+R LK +  K G  LL+ V GCVA  EG  I+ R+P V++V GPQT +RLP+++++ 
Sbjct: 63  LGRVRELKEA--KPG--LLIGVGGCVASQEGASIVSRAPYVDLVFGPQTLHRLPQMIDQR 118

Query: 144 RF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           R  G+  VD  +   +KF+ L        R  G +AF++I EGC K+C++CVVPYTRG E
Sbjct: 119 RASGRAQVDISFPEIEKFDHLPPA-----RVEGPSAFVSIMEGCSKYCSYCVVPYTRGDE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG--EKCTFSDLLYSLSEIKGL 260
           +SR L  V+ E   L D GV E+TLLGQNVNA+RG    G  E   F+ L+  +++I G+
Sbjct: 174 VSRPLDDVLTEVAGLADQGVREVTLLGQNVNAYRGALTAGSTEIADFATLIEYVADIPGI 233

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+RYTTSHP++ +  LI  +  +  L+ +LHLPVQ GSDRIL +M R +T  EY+ +I 
Sbjct: 234 ERIRYTTSHPKEFTQRLIDTYAKVPKLVSHLHLPVQHGSDRILMAMKRGYTVLEYKSVIR 293

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R++RPD+++S+D IVGFPGET++DF   M LV ++ Y  +FSF YSPR GTP +N+ +
Sbjct: 294 KLRAIRPDLSLSTDMIVGFPGETEEDFDKMMALVHEMSYDTSFSFIYSPRPGTPAANLHD 353

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSV- 438
                VK +RL  LQ  + E     + + VG++  +L+E    K+  +L GR+   + V 
Sbjct: 354 DTPREVKLKRLQHLQATIEENVARISRSMVGKVERILVEGPSRKDPNELSGRTENNRVVN 413

Query: 439 ---VLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
               L S    IG +I V+I      +L GEL++
Sbjct: 414 FPAPLASHPRLIGQMIDVKINHAYPHSLRGELLL 447


>gi|325123551|gb|ADY83074.1| putative tRNA-i(6)A37 modification enzyme (MiaB) [Acinetobacter
           calcoaceticus PHEA-2]
          Length = 483

 Score =  372 bits (955), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 196/455 (43%), Positives = 295/455 (64%), Gaps = 20/455 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ ++++ GCQMN YDS RM D+   S GY    + ++AD++++NTC IREKA EKV+S 
Sbjct: 31  KKLYIETQGCQMNEYDSHRMADLLGDSHGYVLTTNPNEADILLMNTCSIREKAQEKVFSE 90

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL--- 140
           LGR R LK+    +  DL++ V GCVA  EG+ I +R+P V+++ GPQT +RLP++L   
Sbjct: 91  LGRWRKLKD----KNPDLVIGVGGCVASQEGDNIQKRAPYVDMIFGPQTLHRLPQMLDQH 146

Query: 141 ----ERARFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
               E+ +  K ++VD  +   +KF+ L        R  G  AF++I EGC K+C+FCVV
Sbjct: 147 NAQVEKPKKDKIKLVDISFPDIEKFDFLP-----EPRVEGFKAFVSIMEGCSKYCSFCVV 201

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
           PYTRG E+SR L  V+ E   L + GV EI+LLGQNVN +RG+  +G  CTF +LL  ++
Sbjct: 202 PYTRGEEVSRPLDDVLAEIAGLAEKGVREISLLGQNVNGYRGETFEGSICTFPELLRLVA 261

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
           EI G+ RLRYTTSHP + SD LI+ + DL  ++ +LHLPVQSGS+ +L++M R HT   Y
Sbjct: 262 EIPGIGRLRYTTSHPLEFSDELIQCYEDLPQMVSHLHLPVQSGSNDVLQAMKRNHTIDVY 321

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
              I ++R +RPD+ +SSDFI+GFPGETD++F  T+  +  + +  ++SF YS R GTP 
Sbjct: 322 IDKIAKLRKIRPDMHLSSDFIIGFPGETDENFAETLQFIKDLDFDHSYSFVYSKRPGTPA 381

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPW 434
           S++ +   E+VK ERL  +QK +++  +   DA +G+I  VLIEK   ++   L+G +  
Sbjct: 382 SDLPDTTPEHVKKERLAQVQKVIKQSSIEKTDAMLGKIERVLIEKVSDQDPNILLGTADN 441

Query: 435 LQSVVLNSKNHNIGDIIKVRITDVK-ISTLYGELV 468
            + V        +G   ++ IT++K ++ +YGEL+
Sbjct: 442 TRLVTFVGDASWVGRFAEIEITEIKTLNLVYGELL 476


>gi|71898877|ref|ZP_00681044.1| Protein of unknown function UPF0004:tRNA-i(6)A37 modification
           enzyme MiaB [Xylella fastidiosa Ann-1]
 gi|71731289|gb|EAO33353.1| Protein of unknown function UPF0004:tRNA-i(6)A37 modification
           enzyme MiaB [Xylella fastidiosa Ann-1]
          Length = 497

 Score =  372 bits (955), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 195/455 (42%), Positives = 287/455 (63%), Gaps = 22/455 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + F+K++GCQMN YDS +M D+  + +  E  ++ ++AD+I++NTC IREKA EKV+S L
Sbjct: 49  KLFIKTHGCQMNEYDSAKMADVLTTTEALELTDNPEEADIILINTCSIREKAQEKVFSQL 108

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR R LK +    G D+++ V GCVA  EGE I++R+P V++V GPQT +RLP+++   R
Sbjct: 109 GRWRALKTN----GRDVIIGVGGCVASQEGETIVKRAPYVDLVFGPQTLHRLPDMIRARR 164

Query: 145 FGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
              R  VD  +   +KF+ L        R  G +AF++I EGC K+C+FCVVPYTRG E+
Sbjct: 165 EQNRPQVDISFPEIEKFDHLPTP-----RAEGPSAFVSIMEGCSKYCSFCVVPYTRGEEV 219

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG-------KGLDGEKCTFSDL---LYS 253
           SR    V+ E   L   GV EI LLGQNVNA+RG          +     ++DL   + +
Sbjct: 220 SRPFEDVLTEIAHLATQGVREINLLGQNVNAYRGAMDPGPSNNTNPAPPPYADLGLLIRA 279

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
           +++ + + R+R+TTSHP + SD L++A+ D+  L  +LHLPVQSGSDRIL +M R +TA 
Sbjct: 280 IAQFESIGRIRFTTSHPLEFSDSLVEAYRDVPQLANHLHLPVQSGSDRILSAMKRGYTAL 339

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
           E++  I ++R+VRPDI+ISSDFI+GFPGE+D DF+ TM L++ IG+ Q+FSF YS R GT
Sbjct: 340 EFKSKIRKLRAVRPDISISSDFIIGFPGESDTDFQKTMQLIEDIGFDQSFSFIYSRRPGT 399

Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRS 432
           P SN+ +   + +K  RL  LQK +       +   +G +  VL+E   K+   +L G++
Sbjct: 400 PASNLEDHTPDEIKRTRLEHLQKHINAYAADISKRMIGTVQTVLVEGPSKKNPNELTGKT 459

Query: 433 PWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
             ++ V        IG  I V IT+   ++L G +
Sbjct: 460 ENMRPVNFPGHPRLIGQFIDVHITEALTNSLRGRV 494


>gi|260879147|ref|ZP_05891502.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Vibrio parahaemolyticus
           AN-5034]
 gi|308090270|gb|EFO39965.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Vibrio parahaemolyticus
           AN-5034]
          Length = 467

 Score =  372 bits (955), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 201/447 (44%), Positives = 288/447 (64%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS +M D+   + GYE     ++AD+++LNTC IREKA EKV+  
Sbjct: 3   KKLLIKTWGCQMNEYDSSKMADLLNAANGYELTEEPEEADVLLLNTCSIREKAQEKVFHQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK+ +      +++ V GCVA  EG+ I  R+P V+V+ GPQT +RLPE+++++
Sbjct: 63  LGRWKTLKDKK----PGVVIGVGGCVATQEGDHIRERAPYVDVIFGPQTLHRLPEMIKQS 118

Query: 144 RFG-KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           +     V+D  +   +KF+RL        R  G TAF++I EGC K+CT+CVVPYTRG E
Sbjct: 119 QTDDAPVMDISFPEIEKFDRLP-----EPRAEGATAFVSIMEGCSKYCTYCVVPYTRGEE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR +  V+ E  +L + GV E+ LLGQNVNA+RG   DGE C+F++LL  ++ I G+ R
Sbjct: 174 VSRPMDDVLFEIAQLAEQGVREVNLLGQNVNAYRGPMHDGEICSFAELLRLVASIDGIDR 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP + +D +I  + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II ++
Sbjct: 234 IRFTTSHPLEFTDDIIAVYEDTPELVSFLHLPVQSGSDRILTMMKRPHTAIEYKSIIRKL 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R  RPDI ISSDFIVGFPGETD DF+ TM L+  + +  +FSF +SPR GTP ++    +
Sbjct: 294 RKARPDIQISSDFIVGFPGETDKDFQDTMKLIKDVDFDMSFSFIFSPRPGTPAADYPCDI 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441
            E VK ERL  LQ+ +  Q + ++   +     VL+E   K+   +L  R+   + V   
Sbjct: 354 PEQVKKERLYELQQTINAQAMRYSRLMLATEQRVLVEGPSKKNLMELRARTENNRVVNFE 413

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                IG  + V+ITDV  ++L GELV
Sbjct: 414 GSADLIGQFVDVKITDVFANSLRGELV 440


>gi|15837508|ref|NP_298196.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Xylella
           fastidiosa 9a5c]
 gi|81547885|sp|Q9PEX2|MIAB_XYLFA RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|9105825|gb|AAF83716.1|AE003930_6 conserved hypothetical protein [Xylella fastidiosa 9a5c]
          Length = 497

 Score =  372 bits (955), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 199/471 (42%), Positives = 292/471 (61%), Gaps = 22/471 (4%)

Query: 10  VAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLN 68
            AH  +   D+     + F+K++GCQMN YDS +M D+  + +  E  ++ ++AD+I++N
Sbjct: 33  AAHPGNPSHDRPPSRGKLFIKTHGCQMNEYDSAKMADVLTTTEALELTDNPEEADIILIN 92

Query: 69  TCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVV 128
           TC IREKA EKV+S LGR R LK S    G D+++ V GCVA  EGE I++R+P V++V 
Sbjct: 93  TCSIREKAQEKVFSQLGRWRALKTS----GRDVIIGVGGCVASQEGEAIVKRAPYVDLVF 148

Query: 129 GPQTYYRLPELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCD 187
           GPQT +RLP+++   R   R  VD  +   +KF+ L        R  G +AF++I EGC 
Sbjct: 149 GPQTLHRLPDMIRARREQNRPQVDIRFPEIEKFDHLPTP-----RAEGPSAFVSIMEGCS 203

Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG-------KGL 240
           K+C+FCVVPYTRG E+SR    V+ E   L   GV EI LLGQNVNA+RG          
Sbjct: 204 KYCSFCVVPYTRGEEVSRPFEDVLTEIAHLATQGVREINLLGQNVNAYRGAMDPGPSNNT 263

Query: 241 DGEKCTFSDL---LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQS 297
           +     ++DL   + ++++ + + R+R+TTSHP + SD L++A+ D+  L  +LHLPVQS
Sbjct: 264 NPAPPPYADLGLLIRAIAQFESIGRIRFTTSHPLEFSDSLVEAYRDVPQLANHLHLPVQS 323

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
           GSDRIL +M R +TA E++  I ++R+VRPDI+ISSDFI+GFPGE+D DF+ TM L++ I
Sbjct: 324 GSDRILSAMKRGYTALEFKSKIRKLRAVRPDISISSDFIIGFPGESDTDFQKTMQLIEDI 383

Query: 358 GYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVL 417
           G+ Q+FSF YS R GTP SN+ +   + +K  RL  LQK +       +   +G +  VL
Sbjct: 384 GFDQSFSFIYSRRPGTPASNLEDHTPDEIKRTRLEHLQKHINTYAADISKRMIGTVQTVL 443

Query: 418 IEKHGKEK-GKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
           +E   K+   +L G++  ++ V        IG  I V IT+   ++L G +
Sbjct: 444 VEGPSKKNPNELTGKTENMRPVNFPGHPRLIGQFIDVHITEALSNSLRGRV 494


>gi|330818257|ref|YP_004361962.1| 2-methylthioadenine synthetase [Burkholderia gladioli BSR3]
 gi|327370650|gb|AEA62006.1| 2-methylthioadenine synthetase [Burkholderia gladioli BSR3]
          Length = 457

 Score =  372 bits (955), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 199/454 (43%), Positives = 289/454 (63%), Gaps = 18/454 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ ++K++GCQMN YDS +M D+   S+G  + +  +DAD+I+ NTC +REKA EKV+S 
Sbjct: 3   KKIYIKTFGCQMNEYDSDKMVDVLNASEGLVKTDRPEDADVILFNTCSVREKAQEKVFSD 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR+R LK +      +L+V V GCVA  EG  I+ R+P V+VV GPQT +RLP++++  
Sbjct: 63  LGRVRELKEA----NPNLIVGVGGCVASQEGAAIVARAPYVDVVFGPQTLHRLPQMIDAR 118

Query: 144 RF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           R  G+  VD  +   +KF+ L        R  G +AF++I EGC K+C++CVVPYTRG E
Sbjct: 119 RASGRSQVDISFPEIEKFDHLPPA-----RVEGPSAFVSIMEGCSKYCSYCVVPYTRGDE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG--EKCTFSDLLYSLSEIKGL 260
           +SR L  V+ E   L D GV E+TLLGQNVNA+RG    G  E   F+ L+  ++E+ G+
Sbjct: 174 VSRPLDDVLTEIAGLADQGVREVTLLGQNVNAYRGALTQGSEEIADFATLIEYVAELPGI 233

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+RYTTSHP++ S  L+  +  +  L+ +LHLPVQ GSDRIL +M R +T  EY+ +I 
Sbjct: 234 ERIRYTTSHPKEFSQRLLDVYARVPKLVNHLHLPVQHGSDRILMAMKRGYTVLEYKSLIR 293

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R++RPD+++S+D I+GFPGET+ DF  TM LV ++ Y  +FSF YSPR GTP +N+ +
Sbjct: 294 KLRAIRPDLSLSTDIIIGFPGETEADFDKTMQLVHEMSYDTSFSFIYSPRPGTPAANLHD 353

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSV- 438
                VK +RL  LQ  + E     + + VG+I  +L+E    K+  +L GR+   + V 
Sbjct: 354 DTPREVKLKRLQHLQATIEENVARISASMVGRIERILVEGPSRKDPNELAGRTENNRVVN 413

Query: 439 ---VLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
               L S    IG +I VRI      +L GELV+
Sbjct: 414 FPAPLASHARLIGQMIDVRINHAYPHSLRGELVL 447


>gi|172061651|ref|YP_001809303.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Burkholderia
           ambifaria MC40-6]
 gi|229890455|sp|B1YWB9|MIAB_BURA4 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|171994168|gb|ACB65087.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia ambifaria
           MC40-6]
          Length = 457

 Score =  372 bits (955), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 197/454 (43%), Positives = 293/454 (64%), Gaps = 18/454 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ ++K++GCQMN YDS +M D+   ++G E+ ++ +DAD+I+ NTC +REKA EKV+S 
Sbjct: 3   KKVYIKTFGCQMNEYDSDKMVDVLNAAEGLEKTDTPEDADIILFNTCSVREKAQEKVFSD 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR+R LK +  K G  LL+ V GCVA  EG  I+ R+P V++V GPQT +RLP+++++ 
Sbjct: 63  LGRVRELKEA--KPG--LLIGVGGCVASQEGASIVSRAPYVDLVFGPQTLHRLPQMIDQR 118

Query: 144 RF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           R  G+  VD  +   +KF+ L        R  G +AF++I EGC K+C++CVVPYTRG E
Sbjct: 119 RASGRAQVDISFPEIEKFDHLPPA-----RVEGPSAFVSIMEGCSKYCSYCVVPYTRGDE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG--EKCTFSDLLYSLSEIKGL 260
           +SR L  V+ E   L D GV E+TLLGQNVNA+RG    G  E   F+ L+  +++I G+
Sbjct: 174 VSRPLDDVLTEVAGLADQGVREVTLLGQNVNAYRGALTAGSTEIADFATLIEYVADIPGI 233

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+RYTTSHP++ +  LI  +  +  L+ +LHLPVQ GSDRIL +M R +T  EY+ +I 
Sbjct: 234 ERIRYTTSHPKEFTQRLIDTYAKVPKLVSHLHLPVQHGSDRILMAMKRGYTVLEYKSVIR 293

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R++RPD+++S+D IVGFPGET++DF   M LV ++ Y  +FSF YSPR GTP +N+ +
Sbjct: 294 KLRAIRPDLSLSTDMIVGFPGETEEDFDKMMALVHEMSYDTSFSFIYSPRPGTPAANLHD 353

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSV- 438
                VK +RL  LQ  + E     + + VG++  +L+E    K+  +L GR+   + V 
Sbjct: 354 DTPREVKLKRLQHLQATIEENVARISRSMVGKVERILVEGPSRKDPNELSGRTENNRVVN 413

Query: 439 ---VLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
               L S    IG +I V+I      +L GEL++
Sbjct: 414 FPAPLASHPRLIGQMIDVKINHAYPHSLRGELLL 447


>gi|295677633|ref|YP_003606157.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia sp.
           CCGE1002]
 gi|295437476|gb|ADG16646.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia sp.
           CCGE1002]
          Length = 461

 Score =  372 bits (954), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 197/458 (43%), Positives = 294/458 (64%), Gaps = 22/458 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ +VK++GCQMN YDS +M D+   ++G  + ++ +DAD+I+ NTC +REKA EKV+S 
Sbjct: 3   KKVYVKTFGCQMNEYDSDKMVDVLGAAEGLVKTDTPEDADVILFNTCSVREKAQEKVFSD 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-ER 142
           LGR+R LK++      +L++ V GCVA  EG  I+ R+P V++V GPQT +RLP+++ ER
Sbjct: 63  LGRVRELKDA----NPNLIIGVGGCVASQEGASIVARAPYVDIVFGPQTLHRLPQMIDER 118

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
              G+  VD  +   +KF+ L        R  G +AF++I EGC K+C++CVVPYTRG E
Sbjct: 119 RASGRAQVDISFPEIEKFDHLPPA-----RVEGPSAFVSIMEGCSKYCSYCVVPYTRGEE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK--GL----DGEKCTFSDLLYSLSE 256
           +SR L  V+ E   L D GV E+TLLGQNVNA+RGK  G       E   F+ L+  +++
Sbjct: 174 VSRPLDDVLTEIAGLADQGVREVTLLGQNVNAYRGKFGGALTLGSTEIADFATLIEYVAD 233

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           I G+ R+RYTTSHP++ +  LI  +  +  L+ +LHLPVQ GSDRIL +M R +T  EY+
Sbjct: 234 IPGIERIRYTTSHPKEFTQRLIDTYAKVPKLVSHLHLPVQHGSDRILMAMKRGYTVLEYK 293

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
            +I ++R++RPD+++S+D IVGFPGET++DF   M LV+++ Y  +FSF YSPR GTP +
Sbjct: 294 SVIRKLRAIRPDLSLSTDMIVGFPGETEEDFAKMMALVEEMKYDTSFSFIYSPRPGTPAA 353

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWL 435
           N+ +     VK +RL  LQ  + E     +DA VG +  +L+E+   K+  +L GR+   
Sbjct: 354 NLHDDTPREVKLKRLQHLQATIEENVQRISDAMVGNVERILVERPARKDPNELAGRTENN 413

Query: 436 QSV----VLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
           + V     + S    IG ++ V+I      +L GELV+
Sbjct: 414 RVVNFPAPVASHARLIGQMVDVKIVHAYPHSLRGELVM 451


>gi|323527295|ref|YP_004229448.1| RNA modification enzyme, MiaB family [Burkholderia sp. CCGE1001]
 gi|323384297|gb|ADX56388.1| RNA modification enzyme, MiaB family [Burkholderia sp. CCGE1001]
          Length = 461

 Score =  372 bits (954), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 195/454 (42%), Positives = 293/454 (64%), Gaps = 18/454 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ +VK++GCQMN YDS +M D+   ++G  + ++ +DAD+I+ NTC +REKA EKV+S 
Sbjct: 3   KKVYVKTFGCQMNEYDSDKMVDVLGAAEGLVKTDTPEDADVILFNTCSVREKAQEKVFSD 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR+R LK +      DL++ V GCVA  EG  I+ R+P V++V GPQT +RLP+++++ 
Sbjct: 63  LGRVRELKEA----NPDLIIGVGGCVASQEGASIVARAPYVDLVFGPQTLHRLPQMIDKR 118

Query: 144 R-FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           R  G+  VD  +   +KF+ L        R  G +AF++I EGC K+C++CVVPYTRG E
Sbjct: 119 RESGRAQVDITFPEIEKFDHLPPA-----RVEGPSAFVSIMEGCSKYCSYCVVPYTRGEE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG--EKCTFSDLLYSLSEIKGL 260
           +SR L  V+ E   L D GV E+TLLGQNVNA+RG    G  E   F+ L+  +++I G+
Sbjct: 174 VSRPLDDVLTEIAGLADQGVREVTLLGQNVNAYRGALTLGSSEIADFATLIEYVADIPGI 233

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+RYTTSHP++ +  LI  +  +  L+ +LHLPVQ GSDRIL +M R +T  EY+ +I 
Sbjct: 234 ERIRYTTSHPKEFTQRLIDTYAKVPKLVSHLHLPVQHGSDRILMAMKRGYTVLEYKSVIR 293

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R++RPD+++S+D IVGFPGET++DF   M LV ++ Y  +FSF YSPR GTP +N+ +
Sbjct: 294 KLRAIRPDLSLSTDMIVGFPGETEEDFDKMMALVHEMKYDTSFSFIYSPRPGTPAANLHD 353

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSV- 438
                VK +RL  LQ  + E     +D+ VG++  +L+E+   K+  +L GR+   + V 
Sbjct: 354 DTPREVKLKRLQHLQATIEENVQRISDSMVGKVERILVERPARKDPNELAGRTENNRVVN 413

Query: 439 ---VLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
               + S    IG ++ V+I      +L GELV+
Sbjct: 414 FPAPVASHARLIGQMVDVKIVKAYPHSLRGELVL 447


>gi|134296886|ref|YP_001120621.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Burkholderia
           vietnamiensis G4]
 gi|229890494|sp|A4JHN3|MIAB_BURVG RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|134140043|gb|ABO55786.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia
           vietnamiensis G4]
          Length = 457

 Score =  372 bits (954), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 198/454 (43%), Positives = 291/454 (64%), Gaps = 18/454 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ +VK++GCQMN YDS +M D+   ++G E+ ++ +DAD+I+ NTC +REKA EKV+S 
Sbjct: 3   KKVYVKTFGCQMNEYDSDKMVDVLNAAEGLEKTDTPEDADIILFNTCSVREKAQEKVFSD 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR+R LK +  K G  LL+ V GCVA  EG  I+ R+P V++V GPQT +RLP++++  
Sbjct: 63  LGRVRELKEA--KPG--LLIGVGGCVASQEGASIVSRAPYVDLVFGPQTLHRLPQMIDAR 118

Query: 144 RF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           R  G+  VD  +   +KF+ L        R  G +AF++I EGC K+C++CVVPYTRG E
Sbjct: 119 RASGRAQVDITFPEIEKFDHLPPA-----RVEGPSAFVSIMEGCSKYCSYCVVPYTRGDE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK--CTFSDLLYSLSEIKGL 260
           +SR L  V+ E   L D GV E+TLLGQNVNA+RG    G      F+ L+  +++I G+
Sbjct: 174 VSRPLDDVLTEVAGLADQGVREVTLLGQNVNAYRGALSAGSADIADFATLIEYVADIPGI 233

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+RYTTSHP++ +  LI  +  +  L+ +LHLPVQ GSDRIL +M R +T  EY+ +I 
Sbjct: 234 ERIRYTTSHPKEFTQRLIDTYAKVPKLVSHLHLPVQHGSDRILMAMKRGYTVLEYKSVIR 293

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R++RPD+++S+D IVGFPGET+DDF   M LV ++ Y  +FSF YSPR GTP +N+ +
Sbjct: 294 KLRAIRPDLSLSTDMIVGFPGETEDDFDKMMALVHEMSYDTSFSFIYSPRPGTPAANLHD 353

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSV- 438
                VK +RL  LQ  + E     + + VG++  +L+E    K+  +L GR+   + V 
Sbjct: 354 DTPREVKLKRLQHLQATIEENVARISQSMVGKVERILVEGPSRKDPNELSGRTENNRVVN 413

Query: 439 ---VLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
               L S    IG +I V+I      +L GEL++
Sbjct: 414 FPAPLASHPRLIGQMIDVKINHAYPHSLRGELLL 447


>gi|229890698|sp|A9HZZ2|MIAB_BORPD RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
          Length = 480

 Score =  372 bits (954), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 198/443 (44%), Positives = 289/443 (65%), Gaps = 13/443 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ +++++GCQMN YDS +M D+    QG E  ++ +DAD+I+ NTC +REKA EKV+S 
Sbjct: 32  RKLYIRTFGCQMNEYDSDKMADVLRGDQGLELTDNPEDADVILFNTCSVREKAQEKVFSD 91

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR+++LK    K   DL++ V GCVA  EGE I++R+P V+VV GPQT +RLPEL+ R 
Sbjct: 92  LGRVQHLK----KLNPDLVIGVGGCVASQEGEAIVKRAPYVDVVFGPQTLHRLPELIRRR 147

Query: 144 RF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           R  G   VD  +   +KF+ L        R  G TAF++I EGC K+C+FCVVPYTRG E
Sbjct: 148 RASGASQVDISFPEIEKFDALPP-----PRIEGATAFVSIMEGCSKYCSFCVVPYTRGEE 202

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-GLDGEKCTFSDLLYSLSEIKGLV 261
           +SR    V+ E   L D GV E+TLLGQNVNA+RG  G  GE   F+ LL  + EI G+ 
Sbjct: 203 VSRPFDDVLVEVADLADQGVKEVTLLGQNVNAYRGPMGDTGEIADFATLLEYVHEIPGIE 262

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+RYTTSHP++M+  ++ A+ +L  L+ +LHLPVQ+GSDR+L +M R +T  E++ ++ R
Sbjct: 263 RIRYTTSHPKEMTQRMVDAYANLPKLVSFLHLPVQAGSDRVLAAMKRGYTTLEFKSVVRR 322

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R+ RP + +SSDFIVGFPGET++DF  TM L++ +G+  +FSF YS R GTP +++++ 
Sbjct: 323 LRAARPGLTLSSDFIVGFPGETEEDFDKTMKLIEDVGFDTSFSFIYSRRPGTPAADLVDD 382

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVL 440
             + VK  RL  LQ  +  Q  +   A VG    +L+E    ++  +L+GR+   + V  
Sbjct: 383 TPQEVKLRRLQQLQALINAQAAAIAQAMVGTRQRLLVEGPSRRDPNELMGRTENNRIVNF 442

Query: 441 NSKNHNIGDIIKVRITDVKISTL 463
            +    IG ++ V ITD   ++L
Sbjct: 443 PAPARLIGQMVDVIITDAYPNSL 465


>gi|171321297|ref|ZP_02910259.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia ambifaria
           MEX-5]
 gi|171093424|gb|EDT38607.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia ambifaria
           MEX-5]
          Length = 457

 Score =  372 bits (954), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 198/454 (43%), Positives = 292/454 (64%), Gaps = 18/454 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ +VK++GCQMN YDS +M D+   ++G E+ ++ +DAD+I+ NTC +REKA EKV+S 
Sbjct: 3   KKVYVKTFGCQMNEYDSDKMVDVLNAAEGLEKTDTPEDADIILFNTCSVREKAQEKVFSD 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR+R LK +  K G  LL+ V GCVA  EG  I+ R+P V++V GPQT +RLP+++++ 
Sbjct: 63  LGRVRELKEA--KPG--LLIGVGGCVASQEGASIVSRAPYVDLVFGPQTLHRLPQMIDQR 118

Query: 144 RF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           R  G+  VD  +   +KF+ L        R  G +AF++I EGC K+C++CVVPYTRG E
Sbjct: 119 RASGRAQVDISFPEIEKFDHLPPA-----RVEGPSAFVSIMEGCSKYCSYCVVPYTRGDE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG--EKCTFSDLLYSLSEIKGL 260
           +SR L  V+ E   L D GV E+TLLGQNVNA+RG    G  E   F+ L+  +++I G+
Sbjct: 174 VSRPLDDVLTEVAGLADQGVREVTLLGQNVNAYRGALTAGSTEIADFATLIEYVADIPGI 233

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+RYTTSHP++ +  LI  +  +  L+ +LHLPVQ GSDRIL +M R +T  EY+ +I 
Sbjct: 234 ERIRYTTSHPKEFTQRLIDTYAKVPKLVSHLHLPVQHGSDRILMAMKRGYTVLEYKSVIR 293

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R++RPD+++S+D IVGFPGET+ DF   M LV ++ Y  +FSF YSPR GTP +N+ +
Sbjct: 294 KLRAIRPDLSLSTDMIVGFPGETEADFDKMMALVHEMSYDTSFSFIYSPRPGTPAANLHD 353

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSV- 438
                VK +RL  LQ  + E     + + VG++  +L+E    K+  +L GR+   + V 
Sbjct: 354 DTPREVKLKRLQHLQATIEENVARISQSMVGKVERILVEGPSRKDPNELSGRTENNRVVN 413

Query: 439 ---VLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
               L S    IG +I V+I      +L GEL++
Sbjct: 414 FPAPLASHPRLIGQMIDVKINHAYPHSLRGELLL 447


>gi|161869349|ref|YP_001598516.1| hypothetical protein NMCC_0355 [Neisseria meningitidis 053442]
 gi|229890574|sp|A9M1G4|MIAB_NEIM0 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|161594902|gb|ABX72562.1| bifunctional enzyme involved in thiolation and methylation of tRNA
           [Neisseria meningitidis 053442]
          Length = 442

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 194/448 (43%), Positives = 283/448 (63%), Gaps = 13/448 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQ--GYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           ++ F++++GCQMN YDS +M  +   +  G E+V   D+AD+I+ NTC +REKA EKV+S
Sbjct: 2   KKVFIRTFGCQMNEYDSDKMLAVLAEEHGGIEQVTQADEADIILFNTCSVREKAQEKVFS 61

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-E 141
            LGR+R LK    ++   L++ VAGCVA  EGE I++R+P V+VV GPQT +RLP+++ +
Sbjct: 62  DLGRVRPLK----EKNPGLIIGVAGCVASQEGENIIKRAPYVDVVFGPQTLHRLPKMIVD 117

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           +   G   VD  +   +KF+ L        R  G  AF++I EGC K+C+FCVVPYTRG 
Sbjct: 118 KETSGLSQVDISFPEIEKFDHLPPA-----RVEGGAAFVSIMEGCSKYCSFCVVPYTRGE 172

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR L+ V+ E   L   GV EI LLGQNVNA+ G+  DGE C F+ LL  + EI G+ 
Sbjct: 173 EFSRPLNDVLTEIANLAQQGVKEINLLGQNVNAYCGEMDDGEICDFATLLRIVHEIPGIE 232

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHPR+ +D +I+ + DL  L+ +LHLP+QSGSDR+L +M R +TA EY+ II +
Sbjct: 233 RMRFTTSHPREFTDSIIECYRDLPKLVSHLHLPIQSGSDRVLSAMKRGYTALEYKSIIRK 292

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R++RPD+ +SSDFIVGFPGET+ +F  T+ LV  I +  +F F YSPR GTP +N+ + 
Sbjct: 293 LRAIRPDLCLSSDFIVGFPGETEREFEQTLKLVKDIAFDLSFVFIYSPRPGTPAANLHDD 352

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSVVL 440
                K  RL  L + +  +    N   +G +   L+E    K+  +L  R+   + V  
Sbjct: 353 TPHEEKVRRLEALNEVIEAETARINQTMIGTVQRCLVEGISKKDPDQLQARTANNRVVNF 412

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
               + I  +I + IT+    +L G++V
Sbjct: 413 TGTPNMINQMIDLEITEAYTFSLRGKVV 440


>gi|71276464|ref|ZP_00652740.1| Protein of unknown function UPF0004:tRNA-i(6)A37 modification
           enzyme MiaB [Xylella fastidiosa Dixon]
 gi|170731017|ref|YP_001776450.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Xylella
           fastidiosa M12]
 gi|229891034|sp|B0U4P1|MIAB_XYLFM RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|71162780|gb|EAO12506.1| Protein of unknown function UPF0004:tRNA-i(6)A37 modification
           enzyme MiaB [Xylella fastidiosa Dixon]
 gi|167965810|gb|ACA12820.1| bifunctional enzyme involved in thiolation and methylation of tRNA
           [Xylella fastidiosa M12]
          Length = 497

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 194/455 (42%), Positives = 287/455 (63%), Gaps = 22/455 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + F+K++GCQMN YDS +M D+  + +  E  ++ ++AD+I++NTC IREKA EKV+S L
Sbjct: 49  KLFIKTHGCQMNEYDSAKMADVLTTTEALELTDNPEEADIILINTCSIREKAQEKVFSQL 108

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR R LK +    G D+++ V GCVA  EGE I++R+P V++V GPQT +RLP+++   R
Sbjct: 109 GRWRALKTN----GRDVIIGVGGCVASQEGETIVKRAPYVDLVFGPQTLHRLPDMIRARR 164

Query: 145 FGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
              R  +D  +   +KF+ L        R  G +AF++I EGC K+C+FCVVPYTRG E+
Sbjct: 165 EQNRPQIDISFPEIEKFDHLPTP-----RAEGPSAFVSIMEGCSKYCSFCVVPYTRGEEV 219

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG-------KGLDGEKCTFSDL---LYS 253
           SR    V+ E   L   GV EI LLGQNVNA+RG          +     ++DL   + +
Sbjct: 220 SRPFEDVLTEIAHLATQGVREINLLGQNVNAYRGAMDPGPSNNTNPAAPPYADLGLLIRA 279

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
           +++ + + R+R+TTSHP + SD L++A+ D+  L  +LHLPVQSGSDRIL +M R +TA 
Sbjct: 280 IAQFESIGRIRFTTSHPLEFSDSLVEAYRDIPQLANHLHLPVQSGSDRILSAMKRGYTAL 339

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
           E++  I ++R+VRPDI+ISSDFI+GFPGE+D DF+ TM L++ IG+ Q+FSF YS R GT
Sbjct: 340 EFKSKIRKLRAVRPDISISSDFIIGFPGESDTDFQKTMQLIEDIGFDQSFSFIYSRRPGT 399

Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRS 432
           P SN+ +   + +K  RL  LQK +       +   +G +  VL+E   K+   +L G++
Sbjct: 400 PASNLEDHTPDEIKRTRLEHLQKHINAYAADISKRMIGTVQTVLVEGPSKKNPNELTGKT 459

Query: 433 PWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
             ++ V        IG  I V IT+   ++L G +
Sbjct: 460 ENMRPVNFPGNPRLIGQFIDVHITEALTNSLRGRV 494


>gi|293610875|ref|ZP_06693175.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292827219|gb|EFF85584.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 483

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 196/455 (43%), Positives = 295/455 (64%), Gaps = 20/455 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ ++++ GCQMN YDS RM D+   S GY    + ++AD++++NTC IREKA EKV+S 
Sbjct: 31  KKLYIETQGCQMNEYDSHRMADLLGDSHGYVLTTNPNEADILLMNTCSIREKAQEKVFSE 90

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL--- 140
           LGR R LK+    +  DL++ V GCVA  EG+ I +R+P V+++ GPQT +RLP++L   
Sbjct: 91  LGRWRKLKD----KNPDLVIGVGGCVASQEGDNIQKRAPYVDMIFGPQTLHRLPQMLDQH 146

Query: 141 ----ERARFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
               E+ +  K ++VD  +   +KF+ L        R  G  AF++I EGC K+C+FCVV
Sbjct: 147 NAQVEKPKKDKIKLVDISFPDIEKFDFLP-----EPRVEGFKAFVSIMEGCSKYCSFCVV 201

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
           PYTRG E+SR L  V+ E   L + GV EI+LLGQNVN +RG+  +G  CTF +LL  ++
Sbjct: 202 PYTRGEEVSRPLDDVLAEIAGLAEKGVREISLLGQNVNGYRGETFEGGICTFPELLRLVA 261

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
           EI G+ RLRYTTSHP + SD LI+ + DL  ++ +LHLPVQSGS+ +L++M R HT   Y
Sbjct: 262 EIPGIGRLRYTTSHPLEFSDELIQCYEDLPQMVSHLHLPVQSGSNDVLQAMKRNHTIDVY 321

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
              I ++R +RPD+ +SSDFI+GFPGETD++F  T+  +  + +  ++SF YS R GTP 
Sbjct: 322 IDKIAKLRKIRPDMHLSSDFIIGFPGETDENFAETLQFIKDLDFDHSYSFVYSKRPGTPA 381

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPW 434
           S++ +   E+VK ERL  +QK +++  +   DA +G+I  VLIEK   ++   L+G +  
Sbjct: 382 SDLPDTTPEHVKKERLAQVQKVIKQSSIEKTDAMLGKIERVLIEKVSDQDPNILLGTADN 441

Query: 435 LQSVVLNSKNHNIGDIIKVRITDVK-ISTLYGELV 468
            + V        +G   ++ IT++K ++ +YGEL+
Sbjct: 442 TRLVTFVGDASWVGRFAEIEITEIKTLNLVYGELL 476


>gi|152996920|ref|YP_001341755.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Marinomonas sp. MWYL1]
 gi|229890562|sp|A6VZE1|MIAB_MARMS RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|150837844|gb|ABR71820.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Marinomonas sp. MWYL1]
          Length = 451

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 193/447 (43%), Positives = 290/447 (64%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ F++++GCQMN YDS RM D+   S   E  ++ ++AD+++LNTC IREKA +KVY  
Sbjct: 3   KKLFIQTHGCQMNEYDSSRMADLLGESHEMELTDNAEEADVLLLNTCSIREKAQDKVYHQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK    ++  +L++ V GCVA  EG+ I +R+  V+++ GPQT ++LPE++  A
Sbjct: 63  LGRWKKLK----QKNPNLVIGVGGCVASQEGDAIRKRAKHVDMIFGPQTLHKLPEMVNAA 118

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
                + D  +   +KF+ L        R  G  AF++I EGC K+CTFCVVPYTRG E+
Sbjct: 119 GKHIPITDVTFPEIEKFDHLPA-----PRVEGAEAFVSIMEGCSKYCTFCVVPYTRGEEV 173

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR    ++ E  +L + GV EI LLGQNVNA+RG   +G++   +D+++++++I G+ R+
Sbjct: 174 SRPFDSILKEVVQLAEQGVREIHLLGQNVNAYRGDTAEGDEADLADIIHAVAQIDGVERI 233

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+TTSHP + SD LI+A  +   L+ +LHLPVQSG+D IL +M R H    Y   I+RI+
Sbjct: 234 RFTTSHPVEFSDSLIEAFRNEPKLVSHLHLPVQSGADNILSAMKRGHDRQYYIDKINRIK 293

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
             RP I++SSDFI+GFPGETDDDF  TM+L+ +IG+  +FSF YS R GTP SN+ +   
Sbjct: 294 EARPGISLSSDFIIGFPGETDDDFVDTMNLIQEIGFDHSFSFVYSQRPGTPASNLEDDTP 353

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLNS 442
           E+VK ERL  LQ+++ +Q    + + VG++  +LI  +  ++ G+L GR+   + V   +
Sbjct: 354 EDVKKERLAILQRRISQQAYDISLSMVGEVQRILISGYSPRDPGQLQGRTENNRIVNFRA 413

Query: 443 KNHN-IGDIIKVRITDVKISTLYGELV 468
            +   IG    V ITD   ++L GELV
Sbjct: 414 FDPQLIGKFADVVITDAYPNSLLGELV 440


>gi|127513851|ref|YP_001095048.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Shewanella loihica PV-4]
 gi|229890652|sp|A3QH41|MIAB_SHELP RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|126639146|gb|ABO24789.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Shewanella loihica PV-4]
          Length = 474

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 194/447 (43%), Positives = 285/447 (63%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS +M D+    QGY      ++AD+++LNTC IREKA EKV+  
Sbjct: 3   KKLHIKTWGCQMNEYDSSKMADLLDEYQGYTLTEEAEEADVLLLNTCSIREKAQEKVFHQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER- 142
           LGR + LK+    +  +L++ V GCVA  EG+ I  R+  V+++ GPQT +RLPE++E+ 
Sbjct: 63  LGRWKTLKD----KNPNLIIGVGGCVASQEGKAIKDRAQCVDLIFGPQTLHRLPEMIEQI 118

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            + GK V+D  +   +KF+RL        R  G +AF++I EGC K+C+FCVVPYTRG E
Sbjct: 119 QQGGKAVIDVSFPEIEKFDRLP-----EPRAEGPSAFVSIMEGCSKYCSFCVVPYTRGEE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR +  V+ E  +L + GV E+ LLGQNVNA+RG   D + CTF++LL  ++ I G+ R
Sbjct: 174 VSRPVDDVILEIAQLAEQGVREVNLLGQNVNAYRGATHDDDICTFAELLRYVAAIDGIDR 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP + +  +I  + D   L+ +LHLPVQSGSD IL  M R H A EY+ II R+
Sbjct: 234 IRFTTSHPIEFTQDIIDVYEDTPELVSFLHLPVQSGSDLILTQMKRGHMAIEYKSIIRRL 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R  RPDI ISSDFIVGFPGE+  DF  TM L++ + +  +FSF YS R GTP S++ + V
Sbjct: 294 RKARPDIQISSDFIVGFPGESKQDFADTMKLIEDVQFDHSFSFIYSARPGTPASDLPDDV 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLN 441
             + K ERL  LQ ++ +Q + ++   +G +  +L+E    K   +L GR+   + V   
Sbjct: 354 SLDEKKERLAILQDRITQQAMRYSRQMLGTVQRILVEGPSVKNPMELRGRTENNRVVNFE 413

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
           +   +IG  + V I DV  ++L G+ +
Sbjct: 414 ADPKHIGSFVDVEIVDVFTNSLRGKFI 440


>gi|90414094|ref|ZP_01222077.1| putative 2-methylthioadenine synthetase [Photobacterium profundum
           3TCK]
 gi|90324889|gb|EAS41417.1| putative 2-methylthioadenine synthetase [Photobacterium profundum
           3TCK]
          Length = 474

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 196/449 (43%), Positives = 284/449 (63%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           +P++  +K++GCQMN YDS +M D+   + G+E     ++AD+++LNTC IREKA EKV+
Sbjct: 1   MPKKLLIKTWGCQMNEYDSSKMADLLNAANGFELTEVPEEADVLLLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR + LK  +     DL++ V GCVA  EG+ I +R+P V+V+ GPQT +RLP++++
Sbjct: 61  HQLGRWKRLKEKK----PDLVIGVGGCVATQEGDSIRKRAPYVDVIFGPQTLHRLPQMIK 116

Query: 142 RARFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
            ++     V+D  +   +KF+ L        R  G TAF++I EGC K+CT+CVVPYTRG
Sbjct: 117 NSQSNHGPVMDISFPEVEKFDNLP-----EPRADGATAFVSIMEGCSKYCTYCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR +  V+ E  +L + GV E+ LLGQNVNA+RG   DG+  TF++LL  ++ I G+
Sbjct: 172 EEVSRPIDDVLYEIAQLAEQGVREVNLLGQNVNAFRGPTHDGDMATFAELLRLVAAIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+RYTTSHP + +D +I  + D   L+ YLHLPVQSGSDRIL  M R HT  EY+  I 
Sbjct: 232 DRIRYTTSHPIEFTDDIIDVYTDTPELVNYLHLPVQSGSDRILTMMKRPHTVLEYKSKIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R VRPDI +SSDFIV FPGE+D DF+ TM L+  I +  ++SF +SPR GTP ++   
Sbjct: 292 KLRKVRPDITMSSDFIVAFPGESDQDFQDTMKLIRDIDFDISYSFVFSPRPGTPAADYPC 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439
            + E VK ERL  LQ+++  Q +      +     +L+E   ++   +L GR+   + V 
Sbjct: 352 DIPEEVKKERLYELQQQINTQAMRHARQMLNTEQRILVEGPSRKNIMELRGRTENNRIVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG  + V I DV  ++L GELV
Sbjct: 412 FEGSAELIGQFVDVNIIDVFTNSLRGELV 440


>gi|192361583|ref|YP_001982120.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Cellvibrio
           japonicus Ueda107]
 gi|229890473|sp|B3PER6|MIAB_CELJU RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|190687748|gb|ACE85426.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Cellvibrio japonicus
           Ueda107]
          Length = 456

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 194/451 (43%), Positives = 287/451 (63%), Gaps = 17/451 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ ++K++GCQMN YDS RM D+   S       + ++AD+I++NTC IREKA EK++  
Sbjct: 9   KKLYIKTHGCQMNEYDSNRMRDLLGESHNMVATENPEEADVILINTCSIREKAQEKLFHE 68

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR +NLK    K+  +L++ V GCVA  EG  I  R+P V+++ GPQT +RLPE++E  
Sbjct: 69  LGRWKNLK----KQNPELIIGVGGCVASQEGAAIAERAPYVDLIFGPQTLHRLPEMMETK 124

Query: 144 RF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           +  G  VVD  +   +KF++L   D       GV+AF++I EGC K+CTFCVVPYTRG E
Sbjct: 125 KSNGVVVVDISFPEIEKFDKLPQPDAD-----GVSAFVSIMEGCSKYCTFCVVPYTRGEE 179

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR ++ V+ E   L   GV E+ LLGQNVNA+RG   DG     ++L+  ++ + G+ R
Sbjct: 180 VSRPVADVMAEVIHLAKQGVREVNLLGQNVNAYRGAAADGTIVDLAELITYIAAVDGIDR 239

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP + +D LI+ +  +  L+ +LHLPVQSGSDRIL +M R HT  EY+  + RI
Sbjct: 240 IRFTTSHPVEFTDALIEVYNQVPELVSHLHLPVQSGSDRILMAMKRGHTVLEYKSKLRRI 299

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           +  RP+I+ SSDFI+GFPGETD DF ATM L+  + +  +FSF YSPR GTP +++ +  
Sbjct: 300 KKNRPNISFSSDFIIGFPGETDADFEATMKLIHDMEFDTSFSFIYSPRPGTPAADLPDDT 359

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLN 441
            E VK +RL  LQ ++ +Q ++ +   VG    +L+  +  K+ G+L GR+    + V+N
Sbjct: 360 PEEVKKQRLAILQDRITQQAMAISRRMVGNTERILVSGYSKKDPGQLSGRTE--NNRVVN 417

Query: 442 SKNHN---IGDIIKVRITDVKISTLYGELVV 469
            +  N   IG    V I +   ++L G L+ 
Sbjct: 418 FRCDNPALIGKFADVLIEEALPNSLRGSLIA 448


>gi|76809108|ref|YP_332302.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Burkholderia
           pseudomallei 1710b]
 gi|254261221|ref|ZP_04952275.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia pseudomallei
           1710a]
 gi|123600209|sp|Q3JVV1|MIAB_BURP1 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|76578561|gb|ABA48036.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia pseudomallei
           1710b]
 gi|254219910|gb|EET09294.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia pseudomallei
           1710a]
          Length = 457

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 193/454 (42%), Positives = 292/454 (64%), Gaps = 18/454 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ +VK++GCQMN YDS +M D+   ++G E+ ++ +DAD+I+ NTC +REKA EKV+S 
Sbjct: 3   KKVYVKTFGCQMNEYDSDKMVDVLNAAEGLEKTDTPEDADIILFNTCSVREKAQEKVFSD 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE-R 142
           LGR+R LK ++     DLL+ V GCVA  EG  I+ R+P V++V GPQT +RLP++++ R
Sbjct: 63  LGRVRELKEAK----PDLLIGVGGCVASQEGASIVARAPYVDLVFGPQTLHRLPQMIDAR 118

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
              G+  VD  +   +KF+ L        R  G +AF++I EGC K+C++CVVPYTRG E
Sbjct: 119 RESGRAQVDITFPEIEKFDHLPPA-----RVEGPSAFVSIMEGCSKYCSYCVVPYTRGDE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG--EKCTFSDLLYSLSEIKGL 260
           +SR L  V+ E   L D GV E+TLLGQNVNA+RG    G  E   F+ L+  +++I G+
Sbjct: 174 VSRPLDDVLTEVAGLADQGVREVTLLGQNVNAYRGAIAAGSAEIADFATLIEYVADIPGI 233

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+RYTTSHP++ +  L+  +  +  L+ +LHLPVQ GSDRIL +M R +T  EY+ +I 
Sbjct: 234 ERIRYTTSHPKEFTQRLLDVYAKVPKLVDHLHLPVQHGSDRILMAMKRGYTVLEYKSVIR 293

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R++RP++++S++ IVGFPGETD DF  TM LV ++ Y  +FSF YSPR GTP +N+ +
Sbjct: 294 KLRAIRPNLSLSTNIIVGFPGETDADFDKTMALVHEMSYDTSFSFIYSPRPGTPAANLAD 353

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVV 439
                +K +RL  LQ  + E     + + +G++  +L+E    K+  +L GR+   + V 
Sbjct: 354 DTPRELKLKRLQHLQATIEENVARISQSMLGKVERILVEGPSRKDPNELAGRTENNRVVN 413

Query: 440 LNSKNHN----IGDIIKVRITDVKISTLYGELVV 469
             + +      IG +I V+I      +L GELV+
Sbjct: 414 FPAPSAAHPRLIGQMIDVKINHAYPHSLRGELVL 447


>gi|163857967|ref|YP_001632265.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bordetella
           petrii DSM 12804]
 gi|163261695|emb|CAP43997.1| conserved hypothetical protein [Bordetella petrii]
          Length = 514

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 198/443 (44%), Positives = 289/443 (65%), Gaps = 13/443 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ +++++GCQMN YDS +M D+    QG E  ++ +DAD+I+ NTC +REKA EKV+S 
Sbjct: 66  RKLYIRTFGCQMNEYDSDKMADVLRGDQGLELTDNPEDADVILFNTCSVREKAQEKVFSD 125

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR+++LK    K   DL++ V GCVA  EGE I++R+P V+VV GPQT +RLPEL+ R 
Sbjct: 126 LGRVQHLK----KLNPDLVIGVGGCVASQEGEAIVKRAPYVDVVFGPQTLHRLPELIRRR 181

Query: 144 RF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           R  G   VD  +   +KF+ L        R  G TAF++I EGC K+C+FCVVPYTRG E
Sbjct: 182 RASGASQVDISFPEIEKFDALPP-----PRIEGATAFVSIMEGCSKYCSFCVVPYTRGEE 236

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-GLDGEKCTFSDLLYSLSEIKGLV 261
           +SR    V+ E   L D GV E+TLLGQNVNA+RG  G  GE   F+ LL  + EI G+ 
Sbjct: 237 VSRPFDDVLVEVADLADQGVKEVTLLGQNVNAYRGPMGDTGEIADFATLLEYVHEIPGIE 296

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+RYTTSHP++M+  ++ A+ +L  L+ +LHLPVQ+GSDR+L +M R +T  E++ ++ R
Sbjct: 297 RIRYTTSHPKEMTQRMVDAYANLPKLVSFLHLPVQAGSDRVLAAMKRGYTTLEFKSVVRR 356

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R+ RP + +SSDFIVGFPGET++DF  TM L++ +G+  +FSF YS R GTP +++++ 
Sbjct: 357 LRAARPGLTLSSDFIVGFPGETEEDFDKTMKLIEDVGFDTSFSFIYSRRPGTPAADLVDD 416

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVL 440
             + VK  RL  LQ  +  Q  +   A VG    +L+E    ++  +L+GR+   + V  
Sbjct: 417 TPQEVKLRRLQQLQALINAQAAAIAQAMVGTRQRLLVEGPSRRDPNELMGRTENNRIVNF 476

Query: 441 NSKNHNIGDIIKVRITDVKISTL 463
            +    IG ++ V ITD   ++L
Sbjct: 477 PAPARLIGQMVDVIITDAYPNSL 499


>gi|156973539|ref|YP_001444446.1| hypothetical protein VIBHAR_01230 [Vibrio harveyi ATCC BAA-1116]
 gi|229891025|sp|A7N1G9|MIAB_VIBHB RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|156525133|gb|ABU70219.1| hypothetical protein VIBHAR_01230 [Vibrio harveyi ATCC BAA-1116]
          Length = 474

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 200/447 (44%), Positives = 289/447 (64%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS +M D+   + GYE     ++AD+++LNTC IREKA EKV+  
Sbjct: 3   KKLLIKTWGCQMNEYDSSKMADLLNAANGYELTEEPEEADVLLLNTCSIREKAQEKVFHQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK+ +      +++ V GCVA  EG+ I +R+P V+V+ GPQT +RLPE+++++
Sbjct: 63  LGRWKTLKDKK----PGVVIGVGGCVATQEGDHIRQRAPYVDVIFGPQTLHRLPEMIKQS 118

Query: 144 RFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           +  +  V+D  +   +KF+RL        R  G TAF++I EGC K+CT+CVVPYTRG E
Sbjct: 119 QSDEAPVMDISFPEIEKFDRLP-----EPRAEGATAFVSIMEGCSKYCTYCVVPYTRGEE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR +  V+ E  +L D GV E+ LLGQNVNA+RG   DGE C+F++LL  ++ I G+ R
Sbjct: 174 VSRPMDDVLFEIAQLADQGVREVNLLGQNVNAYRGPMHDGEICSFAELLRLVASIDGIDR 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP + +D +I  + D   L+ +LHLPVQSGSDR+L  M R HT  EY+ II ++
Sbjct: 234 IRFTTSHPLEFTDDIIAVYEDTPELVSFLHLPVQSGSDRVLTMMKRPHTGIEYKSIIRKL 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R  RPDI ISSDFIVGFPGETD DF+ TM L+  + +  +FSF +SPR GTP ++    +
Sbjct: 294 RKARPDIQISSDFIVGFPGETDKDFQDTMKLIKDVDFDMSFSFIFSPRPGTPAADYPCDL 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441
            E VK ERL  LQ+ +  Q + ++   +     VL+E   K+   +L  R+   + V   
Sbjct: 354 SEQVKKERLYELQQTVNTQAMRYSRQMLDTEQRVLVEGPSKKNLMELRARTENNRVVNFE 413

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                IG  + V+ITDV  ++L GELV
Sbjct: 414 GSADLIGQFVDVKITDVFANSLRGELV 440


>gi|34499604|ref|NP_903819.1| (dimethylallyl)adenosine tRNA methylthiotransferase
           [Chromobacterium violaceum ATCC 12472]
 gi|81654199|sp|Q7NQI8|MIAB_CHRVO RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|34105455|gb|AAQ61810.1| conserved hypothetical protein [Chromobacterium violaceum ATCC
           12472]
          Length = 444

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 197/448 (43%), Positives = 287/448 (64%), Gaps = 18/448 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ ++K++GCQMN YDS +M D+  S +G  + ++ ++AD+I+ NTC +REKA EKV+S 
Sbjct: 2   KKVYIKTFGCQMNEYDSDKMADVLGSAEGMVKTDNPEEADVILFNTCSVREKAQEKVFSD 61

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE-R 142
           LGRIR LK +      DL++ V GCVA  EG+ I++R+P V+VV GPQT +RLP+L+E R
Sbjct: 62  LGRIRPLKEA----NPDLIIGVGGCVASQEGDAIVKRAPFVDVVFGPQTLHRLPDLIESR 117

Query: 143 ARFGKRVVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
            + G+  VD  +   +KF+ +  + VDGG        AF++I EGC K+C+FCVVPYTRG
Sbjct: 118 KQSGRSQVDISFPEIEKFDHIPPAKVDGG-------AAFVSIMEGCSKYCSFCVVPYTRG 170

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR    V+ E   L   GV EITLLGQNVNA+RG   DGE   F+ LL  + E+ G+
Sbjct: 171 EEVSRPFEDVLTEIAGLAAQGVKEITLLGQNVNAYRGLMSDGEIADFALLLEYVHEVPGV 230

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+TTSHPR+ S  +I  +  L  L+ +LHLPVQSGSDR+L +M R +T  EY+ II 
Sbjct: 231 ERIRFTTSHPREFSQRIIDCYAKLPKLVSHLHLPVQSGSDRVLMAMKRGYTGLEYKSIIR 290

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R++RPD+ +SSDFI+GFPGET+ DF  T+ LV    +  +F F YSPR GTP +N+ +
Sbjct: 291 KLRAIRPDLCLSSDFIIGFPGETEADFEQTLKLVRDCEFDFSFVFIYSPRPGTPAANLPD 350

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440
                 K  RL  L + +  +  + N + VG +  VL+E   K+   ++  +    + V+
Sbjct: 351 DTPHAEKVRRLEALNEVIEAKGYAINQSMVGTVQRVLVENVSKKDATMLA-ARTANNRVV 409

Query: 441 NSKNHN--IGDIIKVRITDVKISTLYGE 466
           N   H   +G +I+V+IT     +L GE
Sbjct: 410 NFAGHPRLLGRMIEVKITAAFPHSLAGE 437


>gi|299768718|ref|YP_003730744.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Acinetobacter
           sp. DR1]
 gi|298698806|gb|ADI89371.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Acinetobacter
           sp. DR1]
          Length = 483

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 196/455 (43%), Positives = 295/455 (64%), Gaps = 20/455 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ ++++ GCQMN YDS RM D+   S GY   ++ ++AD++++NTC IREKA EKV+S 
Sbjct: 31  KKLYIETQGCQMNEYDSHRMADLLGDSHGYILTSNPNEADILLMNTCSIREKAQEKVFSE 90

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL--- 140
           LGR R LK+    +  DL++ V GCVA  EG+ I +R+P V+++ GPQT +RLP++L   
Sbjct: 91  LGRWRKLKD----KNPDLVIGVGGCVASQEGDNIQKRAPYVDMIFGPQTLHRLPQMLDQH 146

Query: 141 ----ERARFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
               E+ +  K ++VD  +   +KF+ L        R  G  AF++I EGC K+C+FCVV
Sbjct: 147 NAQVEKPKKDKIKLVDISFPDIEKFDFLP-----EPRVEGFKAFVSIMEGCSKYCSFCVV 201

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
           PYTRG E+SR L  V+ E   L + GV EI+LLGQNVN +RG+  +G  CTF +LL  ++
Sbjct: 202 PYTRGEEVSRPLDDVLAEIAGLAEKGVREISLLGQNVNGYRGETFEGGICTFPELLRLVA 261

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
           EI G+ RLRYTTSHP + SD LI+ + DL  ++ +LHLPVQSGS+ +L++M R HT   Y
Sbjct: 262 EIPGIGRLRYTTSHPLEFSDELIQCYEDLPQMVSHLHLPVQSGSNDVLQAMKRNHTIDVY 321

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
              I ++R +RPD+ +SSDFI+GFPGETD++F  T+  +  + +  ++SF YS R GTP 
Sbjct: 322 IDKIAKLRKIRPDMHLSSDFIIGFPGETDENFAETLQFIKDLDFDHSYSFVYSKRPGTPA 381

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPW 434
           S++ +   E VK ERL  +QK +++  +   DA +G+I  VLIEK   ++   L+G +  
Sbjct: 382 SDLPDTTPEQVKKERLAQVQKVIKQSSIEKTDAMLGKIERVLIEKVSDQDPNILIGTADN 441

Query: 435 LQSVVLNSKNHNIGDIIKVRITDVK-ISTLYGELV 468
            + V        +G   ++ IT++K ++ +YGEL+
Sbjct: 442 TRLVTFVGDATWVGRFAEIEITEIKTLNFVYGELL 476


>gi|225024104|ref|ZP_03713296.1| hypothetical protein EIKCOROL_00972 [Eikenella corrodens ATCC
           23834]
 gi|224943129|gb|EEG24338.1| hypothetical protein EIKCOROL_00972 [Eikenella corrodens ATCC
           23834]
          Length = 441

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 195/450 (43%), Positives = 286/450 (63%), Gaps = 17/450 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQ--GYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           ++ +++++GCQMN YDS +M  +   +  G E+V   D+AD+I+ NTC +REKA EKV+S
Sbjct: 2   KKVYIRTFGCQMNEYDSDKMLAVLAEEHGGIEQVAEPDNADIILFNTCSVREKAQEKVFS 61

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-E 141
            LGRI+ +K    ++  ++++ VAGCVA  EG  I+ R+P V+VV GPQT +RLP+++ +
Sbjct: 62  DLGRIKPIK----QKNPNVIIGVAGCVASQEGAAIIERAPYVDVVFGPQTLHRLPKMIVD 117

Query: 142 RARFGKRVVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           +   G   VD  +   +KF+ L  + VDGG       +AF++I EGC K+C+FCVVPYTR
Sbjct: 118 KETTGHSQVDISFPEIEKFDHLPPARVDGG-------SAFISIMEGCSKYCSFCVVPYTR 170

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G E SR L  V+ E   L   GV EI LLGQNVNA+RG+  +GE C F+ LL  + EI G
Sbjct: 171 GEEFSRPLGDVLTEIAGLAQQGVKEINLLGQNVNAYRGEMDNGEICDFATLLRIVHEIPG 230

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           + RLR+TTSHPR+ SD +I+ + DL  L+ +LHLP+QSGSDR+L +M R +TA EY+ II
Sbjct: 231 IERLRFTTSHPREFSDAIIECYRDLPKLVSHLHLPIQSGSDRVLSAMKRGYTALEYKSII 290

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            ++R++RPD+ +SSDFIVGFPGET+ +F  T+ LV  I +  +F F YSPR GTP +N+ 
Sbjct: 291 RKLRAIRPDLCLSSDFIVGFPGETEREFEQTLKLVKDIAFDLSFVFIYSPRPGTPAANLP 350

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSV 438
           +      K  RL  L + +  +    N   +G +   L+E    K+  +L  R+   + V
Sbjct: 351 DDTPHEEKVRRLEALNEVIEAETARINQTMIGTVQRCLVEGISKKDPDQLQARTANNRVV 410

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468
                   I  ++++ IT+    +L GELV
Sbjct: 411 NFTGDVSLINQMVEIEITEAFTFSLRGELV 440


>gi|77747710|ref|NP_779964.2| hypothetical protein PD1779 [Xylella fastidiosa Temecula1]
 gi|182682396|ref|YP_001830556.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Xylella
           fastidiosa M23]
 gi|229891033|sp|B2I8U1|MIAB_XYLF2 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|229891222|sp|Q87AP4|MIAB_XYLFT RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|182632506|gb|ACB93282.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Xylella fastidiosa M23]
 gi|307578676|gb|ADN62645.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Xylella
           fastidiosa subsp. fastidiosa GB514]
          Length = 497

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 195/455 (42%), Positives = 286/455 (62%), Gaps = 22/455 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + F+K++GCQMN YDS +M D+  + +  E  ++ ++AD+I++NTC IREKA EKV+S L
Sbjct: 49  KLFIKTHGCQMNEYDSAKMADVLTTTEALELTDNPEEADIILINTCSIREKAQEKVFSQL 108

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR R LK +    G D+++ V GCVA  EGE I++R+P V++V GPQT +RLP+++   R
Sbjct: 109 GRWRALKTN----GRDVIIGVGGCVASQEGETIVKRAPYVDLVFGPQTLHRLPDMIRARR 164

Query: 145 FGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
              R  VD  +   +KF+ L        R  G +AF++I EGC K+C+FCVVPYTRG E+
Sbjct: 165 EQNRPQVDISFPEIEKFDHLPTP-----RAEGPSAFVSIMEGCSKYCSFCVVPYTRGEEV 219

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG-------KGLDGEKCTFSDL---LYS 253
           SR    V+ E   L   GV EI LLGQNVNA+RG          +     ++DL   + +
Sbjct: 220 SRPFEDVLTEIAHLATQGVREINLLGQNVNAYRGAMDPGPSNNTNPAPPPYADLGLLIRA 279

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
           +++ + + R+R+TTSHP + SD L++A+ D+  L  +LHLPVQSGSDRIL +M R +TA 
Sbjct: 280 IAQFESIGRIRFTTSHPLEFSDSLVEAYRDVPQLANHLHLPVQSGSDRILSAMKRGYTAL 339

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
           E++  I ++R+VRPDI+ISSDFI+GFPGE+D DF+ TM L+  IG+ Q+FSF YS R GT
Sbjct: 340 EFKSKIRKLRAVRPDISISSDFIIGFPGESDTDFQKTMQLIKDIGFDQSFSFIYSRRPGT 399

Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRS 432
           P SN+ +   + +K  RL  LQK +       +   +G +  VL+E   K+   +L G++
Sbjct: 400 PASNLEDHTPDEIKRTRLEHLQKHINAYAADISKRMIGTVQTVLVEGPSKKNPNELTGKT 459

Query: 433 PWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
             ++ V        IG  I V IT+   ++L G +
Sbjct: 460 ENMRPVNFPGHPRLIGQFIDVHITEALTNSLRGRV 494


>gi|296157337|ref|ZP_06840173.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia sp. Ch1-1]
 gi|295892673|gb|EFG72455.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia sp. Ch1-1]
          Length = 457

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 197/455 (43%), Positives = 293/455 (64%), Gaps = 20/455 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ +VK++GCQMN YDS +M D+   ++G  + ++ +DAD+I+ NTC +REKA EKV+S 
Sbjct: 3   KKVYVKTFGCQMNEYDSDKMVDVLGAAEGLVKTDTPEDADVILFNTCSVREKAQEKVFSD 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR+R LK +      +L++ V GCVA  EG  I+ R+P V++V GPQT +RLP+++++ 
Sbjct: 63  LGRVRELKEA----NPNLIIGVGGCVASQEGASIVARAPYVDLVFGPQTLHRLPQMIDKR 118

Query: 144 R-FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           R  G+  VD  +   +KF+ L        R  G TAF++I EGC K+C++CVVPYTRG E
Sbjct: 119 RESGRAQVDISFPEIEKFDHLPPA-----RVDGPTAFVSIMEGCSKYCSYCVVPYTRGEE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL---DGEKCTFSDLLYSLSEIKG 259
           +SR L  V+ E   L D GV E+TLLGQNVNA+RG GL     E   F+ L+  +++I G
Sbjct: 174 VSRPLDDVLTEIAGLADQGVREVTLLGQNVNAYRG-GLTLGSSEIADFATLIEYVADIPG 232

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           + R+RYTTSHP++ +  LI  +  +  L+ +LHLPVQ GSDRIL +M R +T  EY+ +I
Sbjct: 233 IERIRYTTSHPKEFTQRLIDTYAKVPKLVSHLHLPVQHGSDRILMAMKRGYTVLEYKSVI 292

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            ++R++RPD+++S+D IVGFPGET++DF   M LV ++ Y  +FSF YSPR GTP +N+ 
Sbjct: 293 RKLRAIRPDLSLSTDMIVGFPGETEEDFDKMMTLVHEMKYDTSFSFIYSPRPGTPAANLH 352

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSV 438
           +     VK  RL  LQ  + E     +D+ VG+I  +L+E+   K+  +L GR+   + V
Sbjct: 353 DDTPREVKLRRLQHLQATIEENVQRISDSMVGKIERILVERPARKDPNELAGRTENNRVV 412

Query: 439 ----VLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
                + S    IG ++ V+I      +L GELV+
Sbjct: 413 NFPAPVASHARLIGQMVDVKIVKAYPHSLRGELVL 447


>gi|28057765|gb|AAO29613.1| conserved hypothetical protein [Xylella fastidiosa Temecula1]
          Length = 475

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 195/455 (42%), Positives = 286/455 (62%), Gaps = 22/455 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + F+K++GCQMN YDS +M D+  + +  E  ++ ++AD+I++NTC IREKA EKV+S L
Sbjct: 27  KLFIKTHGCQMNEYDSAKMADVLTTTEALELTDNPEEADIILINTCSIREKAQEKVFSQL 86

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR R LK +    G D+++ V GCVA  EGE I++R+P V++V GPQT +RLP+++   R
Sbjct: 87  GRWRALKTN----GRDVIIGVGGCVASQEGETIVKRAPYVDLVFGPQTLHRLPDMIRARR 142

Query: 145 FGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
              R  VD  +   +KF+ L        R  G +AF++I EGC K+C+FCVVPYTRG E+
Sbjct: 143 EQNRPQVDISFPEIEKFDHLPTP-----RAEGPSAFVSIMEGCSKYCSFCVVPYTRGEEV 197

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG-------KGLDGEKCTFSDL---LYS 253
           SR    V+ E   L   GV EI LLGQNVNA+RG          +     ++DL   + +
Sbjct: 198 SRPFEDVLTEIAHLATQGVREINLLGQNVNAYRGAMDPGPSNNTNPAPPPYADLGLLIRA 257

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
           +++ + + R+R+TTSHP + SD L++A+ D+  L  +LHLPVQSGSDRIL +M R +TA 
Sbjct: 258 IAQFESIGRIRFTTSHPLEFSDSLVEAYRDVPQLANHLHLPVQSGSDRILSAMKRGYTAL 317

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
           E++  I ++R+VRPDI+ISSDFI+GFPGE+D DF+ TM L+  IG+ Q+FSF YS R GT
Sbjct: 318 EFKSKIRKLRAVRPDISISSDFIIGFPGESDTDFQKTMQLIKDIGFDQSFSFIYSRRPGT 377

Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRS 432
           P SN+ +   + +K  RL  LQK +       +   +G +  VL+E   K+   +L G++
Sbjct: 378 PASNLEDHTPDEIKRTRLEHLQKHINAYAADISKRMIGTVQTVLVEGPSKKNPNELTGKT 437

Query: 433 PWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
             ++ V        IG  I V IT+   ++L G +
Sbjct: 438 ENMRPVNFPGHPRLIGQFIDVHITEALTNSLRGRV 472


>gi|217969294|ref|YP_002354528.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Thauera sp.
           MZ1T]
 gi|217506621|gb|ACK53632.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Thauera sp. MZ1T]
          Length = 454

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 195/459 (42%), Positives = 297/459 (64%), Gaps = 23/459 (5%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ +++++GCQMN YDS +M D+  + +   + ++ ++AD+I+ NTC +REKA E+V+  
Sbjct: 2   KKLYIRTFGCQMNEYDSDKMADVLGAHEELVKTDNPEEADVILFNTCSVREKAQERVFHD 61

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE-R 142
           LGR+R LK  +      L++ V GCVA  EGE I++R+P V+VV GPQT +RLP L+  R
Sbjct: 62  LGRVRLLKQKK----PGLIIGVGGCVASQEGEAIVKRAPYVDVVFGPQTLHRLPSLIAAR 117

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            + G+  VD  +   +KF+ +        R  G +AF++I EGC K+CTFCVVPYTRG E
Sbjct: 118 KQSGRSQVDISFPEIEKFDAMPPA-----RVEGASAFVSIMEGCSKYCTFCVVPYTRGDE 172

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG--KGLDGEKCT----FSDLLYSLSE 256
           +SR L  V+ E   L   GV E+TLLGQNVNAWRG     DGE+      F+ LL  ++E
Sbjct: 173 VSRPLEDVLAEIAGLAAQGVKEVTLLGQNVNAWRGVLSREDGEQGADVGDFAFLLECVAE 232

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           I G+ R+RYTTSHPR+M+  LI  +  L  L+  LHLPVQSGSDR+L +M R ++  E++
Sbjct: 233 IPGIERIRYTTSHPREMTQRLIDCYAKLPKLVSQLHLPVQSGSDRVLAAMKRGYSVLEFK 292

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
            ++ ++R+ RPD++++SDFIVGFPGET++DF  TM L+D +G+  +FSF YS R GTP +
Sbjct: 293 SVVRKLRAARPDLSLTSDFIVGFPGETEEDFEKTMKLIDDVGFDGSFSFVYSSRPGTPAA 352

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE--KGKLVGRSPW 434
           ++ + V +  K   L  LQK++ EQ  + ++A VG +  +L+E   K+  + +++GRS  
Sbjct: 353 DLEDPVAQETKLAWLARLQKRIDEQYQANSEAMVGTVQRILVEGAAKKNAEAEMMGRSDN 412

Query: 435 LQSVVLNS----KNHNIGDIIKVRITDVKISTLYGELVV 469
            + V   S    ++  +G  ++VRIT     +L GE++ 
Sbjct: 413 NRVVNFPSDSPVRDRLVGQFVEVRITAALPHSLRGEILT 451


>gi|313669088|ref|YP_004049372.1| hypothetical protein NLA_18110 [Neisseria lactamica ST-640]
 gi|313006550|emb|CBN88014.1| conserved hypothetical protein [Neisseria lactamica 020-06]
          Length = 442

 Score =  370 bits (950), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 195/448 (43%), Positives = 281/448 (62%), Gaps = 13/448 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQ--GYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           ++ F++++GCQMN YDS +M  +   +  G E+V   DDAD+I+ NTC +REKA EKV+S
Sbjct: 2   KKVFIRTFGCQMNEYDSDKMLAVLAEEHGGIEQVTQPDDADIILFNTCSVREKAQEKVFS 61

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-E 141
            LGR+R LK    ++   L++ VAGCVA  EGE I++R+P V+VV GPQT +RLP+++ +
Sbjct: 62  DLGRVRPLK----EKNPGLIIGVAGCVASQEGENIIKRAPYVDVVFGPQTLHRLPKMIVD 117

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           +   G   VD  +   +KF+ L        R  G  AF++I EGC K+C+FCVVPYTRG 
Sbjct: 118 KETSGLSQVDISFPEIEKFDHLPPA-----RVEGGAAFVSIMEGCSKYCSFCVVPYTRGE 172

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR L+ V+ E   L   GV EI LLGQNVNA+RG+  +GE C F+ LL  + EI G+ 
Sbjct: 173 EFSRPLNDVLTEIAGLAQQGVKEINLLGQNVNAYRGEMENGEICDFATLLRIVHEIPGIE 232

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHPR+ +D +I+ + DL  L+ +LHLP+QSGSDR+L +M R +TA EY+ II +
Sbjct: 233 RMRFTTSHPREFTDAIIECYRDLPKLVSHLHLPIQSGSDRVLSAMKRGYTALEYKSIIRK 292

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           + ++RPD+ +SSDFIVGFPGET+ +F  T+ LV  I +  +F F YSPR GTP +N+ + 
Sbjct: 293 LCAIRPDLCLSSDFIVGFPGETEREFEQTLKLVKDIAFDLSFVFIYSPRPGTPAANLPDD 352

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSVVL 440
                K  RL  L + +  +    N   VG +   L+E    K+  +L  R+   + V  
Sbjct: 353 TPHEEKVRRLEALNEVIEAETARINQTMVGTVQRCLVEGISKKDPDQLQARTANNRVVNF 412

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 I  +I + IT+    +L G+ V
Sbjct: 413 TGTPDMINQMIDLEITEAYTFSLRGKTV 440


>gi|213161683|ref|ZP_03347393.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Salmonella enterica
           subsp. enterica serovar Typhi str. E00-7866]
          Length = 383

 Score =  370 bits (950), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 185/390 (47%), Positives = 265/390 (67%), Gaps = 13/390 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS +M D+   + GY+  +  ++AD+++LNTC IREKA EKV+  
Sbjct: 3   KKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTDVAEEADVLLLNTCSIREKAQEKVFHQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR R LK    ++  DL++ V GCVA  EGE I +R+  V+++ GPQT +RLPE++   
Sbjct: 63  LGRWRLLK----EKNPDLIIGVGGCVASQEGEHIRQRAHYVDIIFGPQTLHRLPEMINSV 118

Query: 144 RFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           R G R  VVD  +   +KF+RL        R  G TAF++I EGC+K+CT+CVVPYTRG 
Sbjct: 119 R-GDRSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTYCVVPYTRGE 172

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E+SR    ++ E  +L   GV E+ LLGQNVNAWRG+  DG   TF+DLL  ++ I G+ 
Sbjct: 173 EVSRPSDDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTTGTFADLLRLVAAIDGID 232

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHP + +D +I+ + D   L+ +LHLPVQSGSDR+L  M R HTA EY+ II +
Sbjct: 233 RIRFTTSHPIEFTDDIIEVYRDTPELVSFLHLPVQSGSDRVLNLMGRTHTALEYKAIIRK 292

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R+ RPDI ISSDFIVGFPGET DDF  TM L+  + +  ++SF +S R GTP ++M++ 
Sbjct: 293 LRAARPDIQISSDFIVGFPGETTDDFEKTMKLIADVNFDMSYSFIFSARPGTPAADMVDD 352

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVG 411
           V E  K +RL  LQ+++ +Q ++++   +G
Sbjct: 353 VPEEEKKQRLYILQERINQQAMAWSRRMLG 382


>gi|171057275|ref|YP_001789624.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Leptothrix
           cholodnii SP-6]
 gi|229890558|sp|B1XYX5|MIAB_LEPCP RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|170774720|gb|ACB32859.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Leptothrix cholodnii
           SP-6]
          Length = 469

 Score =  370 bits (950), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 198/452 (43%), Positives = 286/452 (63%), Gaps = 18/452 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMED-MFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ +++++GCQMN YDS +M D M  ++GY   +  + ADLI+ NTC +REKA EKV+S 
Sbjct: 27  KKVYIRTFGCQMNEYDSDKMSDVMAAAEGYTPTDDPEQADLILFNTCSVREKAQEKVFSD 86

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-ER 142
           LGR+++LK   +      L+ V GCVA  EG  I+ R+P V+VV GPQT +RLP++L +R
Sbjct: 87  LGRVKHLKARGV------LIGVGGCVASQEGAAIIERAPYVDVVFGPQTLHRLPQMLAQR 140

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           AR G+  VD  +   +KF+ L        +  G  AF++I EGC K+C++CVVPYTRG E
Sbjct: 141 ARQGRPQVDISFPEIEKFDHLPPA-----KVDGAAAFVSIMEGCSKYCSYCVVPYTRGEE 195

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-GLDGEKCTFSDLLYSLSEIKGLV 261
            SR   +V+ E   L D GV E+TLLGQNVNA+RG+ G   +   F+ LL  + EI G+ 
Sbjct: 196 FSRPFDEVLTEVAGLADQGVKEVTLLGQNVNAYRGRMGDTSDIADFATLLEYVHEIPGIE 255

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+RYTTSHP + +  LI+A+  L  L+ +LHLPVQ GSDRIL  M R +T  EY+  I +
Sbjct: 256 RIRYTTSHPNEFTPALIEAYARLPKLVNHLHLPVQHGSDRILSGMKRGYTVLEYKSTIRK 315

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R++RPDI++S+DFIVGFPGETDDD   TM L+D IG+  +FSF +SPR GTP + + + 
Sbjct: 316 LRAIRPDISLSTDFIVGFPGETDDDHARTMKLIDDIGFDASFSFIFSPRPGTPAAALHDD 375

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVL 440
               VK  RL  LQ  + +     ++  VG +  VL+E    ++  +L+GR+   + V  
Sbjct: 376 TSYEVKLARLQQLQATIEDNVRRISERRVGTVQRVLVEGPSRRDPNELMGRTECNRIVNF 435

Query: 441 NSKNHN---IGDIIKVRITDVKISTLYGELVV 469
           +   +    +G +I +RIT     +L GE V+
Sbjct: 436 DGGPNAARLVGRMIDIRITLAYPHSLRGEPVL 467


>gi|329118626|ref|ZP_08247330.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Neisseria bacilliformis
           ATCC BAA-1200]
 gi|327465361|gb|EGF11642.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Neisseria bacilliformis
           ATCC BAA-1200]
          Length = 443

 Score =  370 bits (949), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 195/447 (43%), Positives = 280/447 (62%), Gaps = 13/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQ--GYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           ++ F++++GCQMN YDS +M  +   +  G E+V   DDAD+I+ NTC +REKA EKV+S
Sbjct: 2   KKVFIRTFGCQMNEYDSEKMLAVLEEEHGGIEQVAEPDDADIILFNTCSVREKAQEKVFS 61

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-E 141
            LGR++ LK    K    L++ VAGCVA  EGE I++R+P V+VV GPQT +RLP+++ +
Sbjct: 62  DLGRVKPLKEKNPK----LIIGVAGCVASQEGENIVKRAPYVDVVFGPQTLHRLPKMIAD 117

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           +   G   VD  +   +KF+ L        R  G +AF++I EGC K+C+FCVVPYTRG 
Sbjct: 118 KETSGYAQVDISFPEIEKFDHLPPA-----RVEGGSAFISIMEGCSKYCSFCVVPYTRGE 172

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR L+ V+ E   L   GV EI LLGQNVNA+RG   DG  C F+ LL  + EI G+ 
Sbjct: 173 EFSRPLNDVLTEIAGLAQQGVKEINLLGQNVNAYRGAMDDGGICDFATLLRIVHEIPGIE 232

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           RLR+TTSHPR+ +D +I+ + DL  L+ +LHLP+QSGSDR+L +M R +TA EY+ II +
Sbjct: 233 RLRFTTSHPREFTDAIIECYRDLPKLVSHLHLPIQSGSDRVLSAMKRGYTALEYKSIIRK 292

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R++RPD+ +SSDFIVGFPGET+ +F  T+ LV  I +  +F F YSPR GTP +N+ + 
Sbjct: 293 LRAIRPDLCLSSDFIVGFPGETEREFEQTLKLVKDIAFDLSFVFIYSPRPGTPAANLPDD 352

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSVVL 440
                K  RL  L + +  +    N   +G +   L+E    K+  +L  R+   + V  
Sbjct: 353 TPHAEKVRRLEALNEVIEAETARINQTMLGTVQRCLVEGISKKDPDQLQARTANNRVVNF 412

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGEL 467
               + I  ++ + IT+    +L G L
Sbjct: 413 TGGPNLINQMVDLEITEAFTFSLRGRL 439


>gi|262374162|ref|ZP_06067439.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Acinetobacter junii
           SH205]
 gi|262311173|gb|EEY92260.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Acinetobacter junii
           SH205]
          Length = 483

 Score =  370 bits (949), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 197/455 (43%), Positives = 293/455 (64%), Gaps = 20/455 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ ++++ GCQMN YDS RM D+   S GY    + ++AD++++NTC IREKA EKV+S 
Sbjct: 31  KKLYIETQGCQMNEYDSHRMADLLGDSHGYVLTTNPNEADILLMNTCSIREKAQEKVFSE 90

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER- 142
           LGR R LK    ++  DL++ V GCVA  EG+ I +R+P V++V GPQT +RLP++L++ 
Sbjct: 91  LGRWRKLK----EQNPDLVIGVGGCVASQEGDNIQKRAPYVDMVFGPQTLHRLPQMLDQH 146

Query: 143 -ARFGK------RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
            A+  K      ++VD  +   +KF+ L        R  G  AF++I EGC K+C+FCVV
Sbjct: 147 QAQVEKPKKEKIKLVDISFPDIEKFDFLP-----EPRVEGFKAFVSIMEGCSKYCSFCVV 201

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
           PYTRG E+SR L  V+ E   L + GV EI+LLGQNVN +RG+  +G  CTF +LL  ++
Sbjct: 202 PYTRGEEVSRPLDDVLAEIAGLAEKGVREISLLGQNVNGYRGETFEGGICTFPELLRLVA 261

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
           EI G+ RLRYTTSHP + SD LI+ + DL  ++ +LHLPVQSGS+ +L++M R HT   Y
Sbjct: 262 EIPGIGRLRYTTSHPLEFSDELIQCYRDLPQMVSHLHLPVQSGSNDVLQAMKRNHTIDVY 321

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
              I ++R VRPD+ +SSDFI+GFPGETD+ F  T+  +  + +  ++SF YS R GTP 
Sbjct: 322 IDKIAKLRKVRPDMHLSSDFIIGFPGETDEHFAETLQFIKDLDFDHSYSFVYSKRPGTPA 381

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPW 434
           S + +   E VK +RL  +Q+ +++  +   DA +G+I  VLIEK   K+   L+G +  
Sbjct: 382 SELPDDTPEQVKKDRLAQVQQVIKQSSIDKTDAMLGKIERVLIEKVSDKDPNLLIGTADN 441

Query: 435 LQSVVLNSKNHNIGDIIKVRITDVK-ISTLYGELV 468
            + V        +G   ++ IT++K ++ +YGEL+
Sbjct: 442 TRLVTFIGDAAWVGRFAEIEITEIKTLNLVYGELL 476


>gi|167835506|ref|ZP_02462389.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia
           thailandensis MSMB43]
          Length = 461

 Score =  370 bits (949), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 196/458 (42%), Positives = 294/458 (64%), Gaps = 22/458 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ +VK++GCQMN YDS +M D+   ++G E+ ++ +DAD+I+ NTC +REKA EKV+S 
Sbjct: 3   KKVYVKTFGCQMNEYDSDKMVDVLNAAEGLEKTDTPEDADIILFNTCSVREKAQEKVFSD 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE-R 142
           LGR+R LK ++     DLL+ V GCVA  EG  I+ R+P V++V GPQT +RLP++++ R
Sbjct: 63  LGRVRELKEAK----PDLLIGVGGCVASQEGASIVARAPYVDLVFGPQTLHRLPQMIDAR 118

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
              G+  VD  +   +KF+ L        R  G +AF++I EGC K+C++CVVPYTRG E
Sbjct: 119 RESGRAQVDITFPEIEKFDHLPPA-----RVEGPSAFVSIMEGCSKYCSYCVVPYTRGDE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK---GLDG---EKCTFSDLLYSLSE 256
           +SR L  V+ E   L D GV E+TLLGQNVNA+RGK    L     +   F+ L+  +++
Sbjct: 174 VSRPLDDVLTEIAGLADQGVREVTLLGQNVNAYRGKFGGALPAGAHDVADFATLIEYVAD 233

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           I G+ R+RYTTSHP++ +  L+  +  +  L+ +LHLPVQ GSDRIL +M R +T  EY+
Sbjct: 234 IPGIERIRYTTSHPKEFTQRLLDVYAKVPKLVDHLHLPVQHGSDRILMAMKRGYTVLEYK 293

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
            +I ++R++RP++++S+D IVGFPGET+ DF  TM LV ++ Y  +FSF YSPR GTP +
Sbjct: 294 SLIRKLRAIRPNLSLSTDIIVGFPGETEADFDKTMALVHEMSYDTSFSFIYSPRPGTPAA 353

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWL 435
           ++ +     VK ERL  LQ  + E     + + VG++  +L+E    K+  +L GR+   
Sbjct: 354 SLADDTPRGVKLERLQHLQATIEENVARISQSMVGRVERILVEGPSRKDPNELAGRTENN 413

Query: 436 QSV----VLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
           + V     L + +  IG +I V+I      +L GELV+
Sbjct: 414 RVVNFPAPLAAHSRLIGQMIDVKINHAYPHSLRGELVL 451


>gi|209694559|ref|YP_002262487.1| hypothetical protein VSAL_I0996 [Aliivibrio salmonicida LFI1238]
 gi|229890434|sp|B6EIN8|MIAB_ALISL RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|208008510|emb|CAQ78681.1| conserved hypothetical protein [Aliivibrio salmonicida LFI1238]
          Length = 474

 Score =  370 bits (949), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 192/447 (42%), Positives = 283/447 (63%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS +M D+   + GYE      +AD+++LNTC IREKA EKV+  
Sbjct: 3   KKLLIKTWGCQMNEYDSSKMADLLGAANGYELTEDPKEADVLLLNTCSIREKAQEKVFHQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR ++LK+ +     DL++ V GCVA  EG+ I +R+P V+V+ GPQT +RLP++++++
Sbjct: 63  LGRWKHLKDKK----PDLVIGVGGCVATQEGDHIRQRAPYVDVIFGPQTLHRLPQMIKQS 118

Query: 144 RFG-KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
               K V+D  +   +KF+ L        +  GV+AF++I EGC K+CT+CVVPYTRG E
Sbjct: 119 LSNEKTVMDISFPEIEKFDNLP-----EPKADGVSAFVSIMEGCSKYCTYCVVPYTRGEE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR L  V+ E  +L + GV E+ LLGQNVNA+RG   DG+ C+F+DLL  ++ I G+ R
Sbjct: 174 VSRPLDDVLFEIAQLAEQGVREVNLLGQNVNAYRGPMYDGDICSFADLLRMVASIDGIDR 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LR+TTSHP +  D ++  + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II ++
Sbjct: 234 LRFTTSHPLEFGDDIVAVYEDTPELVSFLHLPVQSGSDRILTMMKRPHTAIEYKSIIRKL 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R  RPDI ISSDFIV FPGE++ DF+ TM L+  + +  ++SF +SPR GTP ++    +
Sbjct: 294 RKARPDILISSDFIVAFPGESEKDFQDTMKLIKDVDFDMSYSFVFSPRPGTPAADYPCDI 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLVGRSPWLQSVVLN 441
            E  K +RL  LQ+++  Q   F+   +   +  L+E   K    +L  R+   + V   
Sbjct: 354 PEQTKKDRLAELQQQISFQSARFSRQMLNTELRALVEGPSKRNPMELRARTENNRVVNFT 413

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                IG  + + IT+   ++L G LV
Sbjct: 414 GSPELIGQFVDLHITESFTNSLRGTLV 440


>gi|170693394|ref|ZP_02884553.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia graminis
           C4D1M]
 gi|170141549|gb|EDT09718.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia graminis
           C4D1M]
          Length = 461

 Score =  370 bits (949), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 194/454 (42%), Positives = 292/454 (64%), Gaps = 18/454 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ +VK++GCQMN YDS +M D+   ++G  + ++ +DAD+I+ NTC +REKA EKV+S 
Sbjct: 3   KKVYVKTFGCQMNEYDSDKMVDVLGAAEGLVKTDTPEDADVILFNTCSVREKAQEKVFSD 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR+R LK +      +L++ V GCVA  EG  I+ R+P V++V GPQT +RLP+++++ 
Sbjct: 63  LGRVRELKEA----NPNLIIGVGGCVASQEGASIVARAPYVDLVFGPQTLHRLPQMIDKR 118

Query: 144 R-FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           R  G+  VD  +   +KF+ L        R  G +AF++I EGC K+C++CVVPYTRG E
Sbjct: 119 RESGRAQVDISFPEIEKFDHLPPA-----RVEGPSAFVSIMEGCSKYCSYCVVPYTRGEE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG--EKCTFSDLLYSLSEIKGL 260
           +SR L  V+ E   L D GV E+TLLGQNVNA+RG    G  E   F+ L+  +++I G+
Sbjct: 174 VSRPLDDVLTEIAGLADQGVREVTLLGQNVNAYRGALTVGSSEIADFATLIEYVADIPGI 233

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+RYTTSHP++ +  LI  +  +  L+ +LHLPVQ GSDRIL +M R +T  EY+ +I 
Sbjct: 234 ERIRYTTSHPKEFTQRLIDTYAKVPKLVSHLHLPVQHGSDRILMAMKRGYTVLEYKSVIR 293

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R++RPD+++S+D IVGFPGET++DF   M LV ++ Y  +FSF YSPR GTP +N+ +
Sbjct: 294 KLRAIRPDLSLSTDMIVGFPGETEEDFDKMMALVHEMKYDTSFSFIYSPRPGTPAANLHD 353

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSV- 438
                VK +RL  LQ  + E     +D+ VG++  +L+E+   K+  +L GR+   + V 
Sbjct: 354 DTPREVKLKRLQHLQATIEENVQRISDSMVGKVERILVERPARKDPNELAGRTENNRVVN 413

Query: 439 ---VLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
               L S     G ++ V+I      +L GELV+
Sbjct: 414 FPAPLASHARLTGQMVDVKIVKAYPHSLRGELVL 447


>gi|261211993|ref|ZP_05926279.1| tRNA-i(6)A37 methylthiotransferase [Vibrio sp. RC341]
 gi|260838601|gb|EEX65252.1| tRNA-i(6)A37 methylthiotransferase [Vibrio sp. RC341]
          Length = 474

 Score =  369 bits (948), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 200/447 (44%), Positives = 289/447 (64%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS +M D+   + GYE     ++AD+++LNTC IREKA EKV+  
Sbjct: 3   KKLLIKTWGCQMNEYDSSKMADLLNAANGYELTEIPEEADVLLLNTCSIREKAQEKVFHQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK+ +      +++ V GCVA  EG+ I  R+P V+V+ GPQT +RLPE+++++
Sbjct: 63  LGRWKTLKDKK----PGVVIGVGGCVATQEGDSIRDRAPYVDVIFGPQTLHRLPEMIKQS 118

Query: 144 RF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           +     V+D  +   +KF+RL        R  G TAF++I EGC K+CT+CVVPYTRG E
Sbjct: 119 QTTDAPVMDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCSKYCTYCVVPYTRGEE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR +  V+ E  +L + GV E+ LLGQNVNA+RG   DGE C+F++LL  ++ I G+ R
Sbjct: 174 VSRPMDDVLFEIAQLAEQGVREVNLLGQNVNAYRGATHDGEICSFAELLRLVATIDGIDR 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP + +D +I  + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II ++
Sbjct: 234 IRFTTSHPLEFTDDIIAVYEDTPELVSFLHLPVQSGSDRILTMMKRPHTAIEYKSIIRKL 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R  RPDI ISSDFIV FPGETD DF+ TM L+  + +  +FSF +SPR GTP ++    +
Sbjct: 294 RKARPDIQISSDFIVAFPGETDKDFQDTMKLIRDVDFDMSFSFIFSPRPGTPAADYPCDL 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441
            E VK ERL  LQ+++  Q + ++   +G    +L+E   K+   +L GR+   + V   
Sbjct: 354 PEEVKKERLYELQQQINSQAMRYSRLMLGTEQRILVEGPSKKDLMELRGRTENNRVVNFE 413

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                IG  + V+I DV  ++L GELV
Sbjct: 414 GSPELIGQFVDVKIVDVFANSLRGELV 440


>gi|315127051|ref|YP_004069054.1| involved in methylthiolation of isopentenylated A37 derivatives in
           tRNA, Fe-S protein [Pseudoalteromonas sp. SM9913]
 gi|315015565|gb|ADT68903.1| involved in methylthiolation of isopentenylated A37 derivatives in
           tRNA, Fe-S protein [Pseudoalteromonas sp. SM9913]
          Length = 468

 Score =  369 bits (948), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 194/437 (44%), Positives = 281/437 (64%), Gaps = 13/437 (2%)

Query: 36  MNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSR 94
           MN YDS +M D+   + GY+      DAD+I+LNTC IREKA EKV+  LGR + LK+ +
Sbjct: 1   MNEYDSQKMADLLDATNGYQLTEEAADADVILLNTCSIREKAQEKVFHQLGRWKLLKDDK 60

Query: 95  IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF--GKRVVDT 152
                DL++ V GCVA  EG+ I +R+P V+V+ GPQT +RLPE++++ +   G  VVD 
Sbjct: 61  ----PDLIIGVGGCVASQEGDSIRQRAPFVDVIFGPQTLHRLPEMIKQVQGNKGSSVVDI 116

Query: 153 DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVD 212
            +   +KF+RL        +  G +AF++I EGC K+CTFCVVPYTRG E+SR +  V+ 
Sbjct: 117 SFPEIEKFDRLP-----EPKAEGPSAFVSIMEGCSKYCTFCVVPYTRGEEVSRPVDDVLL 171

Query: 213 EARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
           E  +L + GV E+ LLGQNVNA+RG   DGE C FSDL+  ++ I G+ R+RYTTSHP +
Sbjct: 172 EVAQLAEQGVREVNLLGQNVNAYRGDTHDGEICYFSDLIRLVAAIDGIDRIRYTTSHPVE 231

Query: 273 MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAIS 332
            +  +I A+ D+  L+ +LHLPVQSGSDR+L  M R HTA EY+  I ++R +RP++++S
Sbjct: 232 FTPDIIDAYADVPELVDHLHLPVQSGSDRVLNLMKRGHTALEYKSTIRKLRKIRPNLSMS 291

Query: 333 SDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLL 392
           SDFI+GFPGE+  DF ATM+L++ IG+  +FSF YS R GTP +++ + V E  K ERL 
Sbjct: 292 SDFIIGFPGESKADFEATMNLINDIGFDMSFSFIYSARPGTPAADLPDDVTEQEKKERLY 351

Query: 393 CLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLVGRSPWLQSVVLNSKNHNIGDII 451
            LQ ++ +     +         +L+E   K+   +L GR+   + V     +  IG  +
Sbjct: 352 LLQNRITQMAQQISRQMFDTEQRILVEGPSKKNPMELRGRTENNRVVNFVGPHTVIGQFV 411

Query: 452 KVRITDVKISTLYGELV 468
            VRIT+   ++L G+L+
Sbjct: 412 DVRITEALPNSLRGDLI 428


>gi|332763335|gb|EGJ93575.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Shigella flexneri K-671]
          Length = 461

 Score =  369 bits (948), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 195/437 (44%), Positives = 284/437 (64%), Gaps = 14/437 (3%)

Query: 36  MNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSR 94
           MN YDS +M D+   + GY+  +  ++AD+++LNTC IREKA EKV+  LGR + LK   
Sbjct: 1   MNEYDSSKMADLLDATHGYQLTDVAEEADVLLLNTCSIREKAQEKVFHQLGRWKLLK--- 57

Query: 95  IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR--VVDT 152
            ++  DL++ V GCVA  EGE I +R+  V+++ GPQT +RLPE++   R G R  VVD 
Sbjct: 58  -EKNPDLIIGVGGCVASQEGEHIRQRAHYVDIIFGPQTLHRLPEMINSVR-GDRSPVVDI 115

Query: 153 DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVD 212
            +   +KF+RL        R  G TAF++I EGC+K+CT+CVVPYTRG E+SR    ++ 
Sbjct: 116 SFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTYCVVPYTRGEEVSRPSDDILF 170

Query: 213 EARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
           E  +L   GV E+ LLGQNVNAWRG+  DG   +F+DLL  ++ I G+ R+R+TTSHP +
Sbjct: 171 EIAQLAAQGVREVNLLGQNVNAWRGENYDGTTGSFADLLRLVAAIDGIDRIRFTTSHPIE 230

Query: 273 MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAIS 332
            +D +I+ + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II ++R+ RPDI IS
Sbjct: 231 FTDDIIEVYRDTPELVSFLHLPVQSGSDRILNLMGRTHTALEYKAIIRKLRAARPDIQIS 290

Query: 333 SDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLL 392
           SDFIVGFPGET +DF  TM L+  + +  ++SF +S R GTP ++M++ V E  K +RL 
Sbjct: 291 SDFIVGFPGETTEDFEKTMKLIADVNFDMSYSFIFSARPGTPAADMVDDVPEEEKKQRLY 350

Query: 393 CLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNSKNHNIGDII 451
            LQ+++ +Q ++++   +G    +L+E   ++   +L GR+   + V        IG  +
Sbjct: 351 ILQERINQQAMAWSRRMLGTTQRILVEGTSRKSIMELSGRTENNRVVNFEGTPDMIGKFV 410

Query: 452 KVRITDVKISTLYGELV 468
            V ITDV  ++L G++V
Sbjct: 411 DVEITDVYPNSLRGKVV 427


>gi|311695357|gb|ADP98230.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [marine bacterium HP15]
          Length = 448

 Score =  369 bits (947), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 194/449 (43%), Positives = 287/449 (63%), Gaps = 19/449 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ ++K++GCQMN YDS RM D+  + +  E  +S DDAD+++LNTC IREKA EKV+  
Sbjct: 3   KKLYIKTHGCQMNEYDSARMADLLKTGETVEMTDSPDDADILLLNTCSIREKAQEKVFHQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK+ +     ++++ V GCVA  EG+ I+ R+P V++V GPQT +RLP+++   
Sbjct: 63  LGRWKKLKSKK----PEMIIGVGGCVASQEGQAIIDRAPYVDMVFGPQTLHRLPDMITEV 118

Query: 144 RF---GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           R    G  VVD  +   +KF+ L   + G +   G +AF++I EGC K+CTFCVVPYTRG
Sbjct: 119 RAKGNGVGVVDVSFPEIEKFDNLP--EPGAD---GPSAFVSIMEGCSKYCTFCVVPYTRG 173

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR    V+ E   L   GV E+ LLGQNVNA+RG+  DG+    ++L+  ++ I G+
Sbjct: 174 EEVSRPADDVIAEVAHLASQGVREVNLLGQNVNAYRGETHDGDTMDLAELIELIATIDGI 233

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+RYTTSHP + SD LI  +  +  L+ +LHLPVQSGSDRIL +M R HTA EY+  + 
Sbjct: 234 DRIRYTTSHPVEFSDALIDVYERVPELVSHLHLPVQSGSDRILAAMKRGHTALEYKSKLR 293

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           R+R +RPDI+ SSDFI+GFPGET+ DF  TM L++ IG+  +FSF YS R GTP S++ +
Sbjct: 294 RLRKIRPDISFSSDFIIGFPGETEKDFEDTMKLINDIGFDMSFSFVYSARPGTPASDLPD 353

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSVV 439
               ++K +RL  LQ +L +  +  +   VG    +L+     K+ G+  GR+    + +
Sbjct: 354 DTPMDIKKQRLSILQDRLNQNVMDISRKMVGSTQRILVTGLSKKDPGEYAGRTE--NNRI 411

Query: 440 LNSKNHN---IGDIIKVRITDVKISTLYG 465
           +N ++ N   +G  I V I +   ++L G
Sbjct: 412 VNFRHENPEVVGHFIDVNIVEAYPNSLRG 440


>gi|260773261|ref|ZP_05882177.1| tRNA-i(6)A37 methylthiotransferase [Vibrio metschnikovii CIP 69.14]
 gi|260612400|gb|EEX37603.1| tRNA-i(6)A37 methylthiotransferase [Vibrio metschnikovii CIP 69.14]
          Length = 474

 Score =  369 bits (947), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 198/447 (44%), Positives = 289/447 (64%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS +M D+   + GYE     ++AD+++LNTC IREKA EKV+  
Sbjct: 3   KKLLIKTWGCQMNEYDSSKMADLLNAANGYELTEEPEEADVLLLNTCSIREKAQEKVFHQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR +NLK+ +      +++ V GCVA  EG+ I  R+P V+V+ GPQT +RLPE+++++
Sbjct: 63  LGRWKNLKDKK----PGVVIGVGGCVATQEGDHIRERAPFVDVIFGPQTLHRLPEMIKQS 118

Query: 144 R-FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           +     V+D  +   +KF+RL        +  G TAF++I EGC K+CT+CVVPYTRG E
Sbjct: 119 QSTDAPVMDISFPEIEKFDRLP-----EPKAEGPTAFVSIMEGCSKYCTYCVVPYTRGEE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR +  V+ E  +L   GV E+ LLGQNVNA+RG   DG  C+F++LL  ++ I G+ R
Sbjct: 174 VSRPMDDVLYEIAQLAAQGVREVNLLGQNVNAYRGPMHDGTICSFAELLRLVASIDGIDR 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP + +D +I  + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II ++
Sbjct: 234 IRFTTSHPLEFTDDIIAVYEDTPELVSFLHLPVQSGSDRILTMMKRPHTAIEYKSIIRKL 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R  RPDI ISSDFIVGFPGE+D+DF+ATM L+  + +  +FSF +SPR GTP ++    V
Sbjct: 294 RKARPDIQISSDFIVGFPGESDNDFQATMKLIRDVDFDMSFSFIFSPRPGTPAADYPCDV 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441
            E  K ERL  LQ+++  Q + ++   +     +L+E   K+   +L GR+   + V   
Sbjct: 354 SEETKKERLYELQQQINSQAMRYSRLMLDTEQRILVEGPSKKNLMELRGRTENNRVVNFE 413

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                IG  + V+I DV  ++L GEL+
Sbjct: 414 GSPDLIGQFVDVKIVDVFSNSLRGELI 440


>gi|254490396|ref|ZP_05103585.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Methylophaga thiooxidans
           DMS010]
 gi|224464529|gb|EEF80789.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Methylophaga thiooxydans
           DMS010]
          Length = 446

 Score =  369 bits (946), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 188/447 (42%), Positives = 289/447 (64%), Gaps = 12/447 (2%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + +++++GCQMN YDS +M ++   S   E  +  ++AD+++LNTC IREKA EKV+  L
Sbjct: 4   KLYIRTFGCQMNEYDSSKMAEVLADSHQLEPTDIPEEADVLLLNTCSIREKAQEKVFHQL 63

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR +  K+SR     +L++ V GCVA  EGE I +R+P V+++ GPQT +RLP +LE  +
Sbjct: 64  GRWKRWKDSR----PNLVIGVGGCVASQEGEAIRKRAPYVDLIFGPQTLHRLPAMLEEVK 119

Query: 145 FGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             ++  +D  +   +KF+ L        R  G TAF++I EGC K+CTFCVVPYTRG E+
Sbjct: 120 ISRKPSIDISFPEIEKFDNLPA-----PRADGPTAFVSIMEGCSKYCTFCVVPYTRGEEV 174

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR +  ++ E R+L   GV E+ LLGQNVNA++G+  + E    + L++ ++ I+G+ R+
Sbjct: 175 SRPVGPILREIRQLAAQGVREVNLLGQNVNAYQGEIDEDETADLALLIHYVAAIEGIERI 234

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+TTSHP + SD LI+A  ++  L+ +LHLPVQSGSDRIL  M R HTA +Y + I R++
Sbjct: 235 RFTTSHPVEFSDSLIEAFAEVPELVNHLHLPVQSGSDRILTMMKRGHTAKQYLEKIRRLK 294

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
            +RP++++SSDFI+GFP ET+ DF+ATMDL++++ +  +FSF YS R GTP +  ++ V 
Sbjct: 295 EIRPELSMSSDFIIGFPNETEADFQATMDLINEVEFDHSFSFIYSARPGTPAAAFVDSVP 354

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVLNS 442
           E+VK ERL  +Q +L E +     + VG    +L+E+      + + GR+   + V    
Sbjct: 355 EDVKKERLQIMQSRLWELEQMHAQSMVGTTQRILVERAAHRGDEDMAGRTENNRVVNFQG 414

Query: 443 KNHNIGDIIKVRITDVKISTLYGELVV 469
               IG  + VRI +   ++L GEL+ 
Sbjct: 415 DESLIGQFVDVRIEEAFSNSLRGELLT 441


>gi|186475181|ref|YP_001856651.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Burkholderia
           phymatum STM815]
 gi|229890465|sp|B2JD88|MIAB_BURP8 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|184191640|gb|ACC69605.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia phymatum
           STM815]
          Length = 456

 Score =  369 bits (946), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 196/454 (43%), Positives = 291/454 (64%), Gaps = 18/454 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ +VK++GCQMN YDS +M D+   ++G  + ++ +DAD+I+ NTC +REKA EKV+S 
Sbjct: 3   KKVYVKTFGCQMNEYDSDKMVDVLGAAEGLVKTDTPEDADVILFNTCSVREKAQEKVFSD 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR+R LK +      +LL+ V GCVA  EG  I+ R+P V++V GPQT +RLP+++++ 
Sbjct: 63  LGRVRELKEA----NPNLLIGVGGCVASQEGASIVARAPYVDLVFGPQTLHRLPQMIDQR 118

Query: 144 RF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           R  G+  VD  +   +KF+ L        R  G +AF++I EGC K+C++CVVPYTRG E
Sbjct: 119 RASGRPQVDITFPEIEKFDHLPPA-----RIDGPSAFVSIMEGCSKYCSYCVVPYTRGEE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG--EKCTFSDLLYSLSEIKGL 260
           +SR L  V+ E   L D GV E+TLLGQNVNA+RG    G  E   F+ L+  +++I G+
Sbjct: 174 VSRPLDDVLTEIAGLADQGVREVTLLGQNVNAYRGAMTLGATEIADFATLIEYVADIPGI 233

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+RYTTSHP++ +  LI  +  +  L+ +LHLPVQ GSDRIL +M R +T  EY+ +I 
Sbjct: 234 ERIRYTTSHPKEFTQRLIDTYAKVPKLVSHLHLPVQHGSDRILMAMKRGYTVLEYKSVIR 293

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R++RPD+++S+D IVGFPGET++DF   M LV  + Y  +FSF YSPR GTP +N+ +
Sbjct: 294 KLRAIRPDLSLSTDMIVGFPGETEEDFDKMMQLVHDMSYDTSFSFIYSPRPGTPAANLQD 353

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVV 439
                VK  RL  LQ  + E     + A VG++  +L+E+   K+  +L GR+   + V 
Sbjct: 354 DTPREVKLRRLQHLQATIEENVQRISQAMVGKVERILVERPARKDPNELAGRTENNRVVN 413

Query: 440 LNS--KNHN--IGDIIKVRITDVKISTLYGELVV 469
             +  + H   IG +I V+I      +L GELV+
Sbjct: 414 FPAPVETHARLIGQMIDVKIVHAYPHSLRGELVM 447


>gi|149192272|ref|ZP_01870484.1| hypothetical protein VSAK1_11405 [Vibrio shilonii AK1]
 gi|148833887|gb|EDL50912.1| hypothetical protein VSAK1_11405 [Vibrio shilonii AK1]
          Length = 474

 Score =  369 bits (946), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 198/447 (44%), Positives = 288/447 (64%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS +M D+   + GYE     ++AD+++LNTC IREKA EKV+  
Sbjct: 3   KKLLIKTWGCQMNEYDSSKMADLLNAANGYELTEDPEEADVLLLNTCSIREKAQEKVFHQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK+ +      +++ V GCVA  EG+ I  R+P V+V+ GPQT +RLPE+++++
Sbjct: 63  LGRWKTLKDKK----DGVVIGVGGCVATQEGDHIRERAPFVDVIFGPQTLHRLPEMIKQS 118

Query: 144 RFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           +  +  V+D  +   +KF+RL        R  G TAF++I EGC K+CT+CVVPYTRG E
Sbjct: 119 QSDEAPVMDISFPEIEKFDRLP-----EPRAEGATAFVSIMEGCSKYCTYCVVPYTRGEE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR +  V+ E  +L D GV E+ LLGQNVNA+RG   DG+ C+F++LL  ++ I G+ R
Sbjct: 174 VSRPMDDVLFEIAQLADQGVREVNLLGQNVNAYRGPMHDGDICSFAELLRLVASIDGIDR 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP + +D +I  + D   L+ +LHLPVQSGSDR+L  M R HTA EY+ II ++
Sbjct: 234 IRFTTSHPLEFTDDIIAVYEDTPELVSFLHLPVQSGSDRVLTMMKRPHTAIEYKSIIRKL 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R  RPDI ISSDFIVGFPGETD DF+ TM L+  + +  +FSF +SPR GTP ++    +
Sbjct: 294 RKARPDIQISSDFIVGFPGETDKDFQDTMKLIKDVDFDMSFSFIFSPRPGTPAADYPCDL 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441
            E  K +RL  LQ+ +  Q + ++   +     VL+E   K+   +L  R+   + V   
Sbjct: 354 PEQTKKDRLYELQQTVNSQAMRYSRQMLDTEQRVLVEGPSKKNLMELRARTENNRVVNFE 413

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                IG  + V+ITDV  ++L GELV
Sbjct: 414 GGAELIGQFVDVKITDVFANSLRGELV 440


>gi|296113655|ref|YP_003627593.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Moraxella catarrhalis
           RH4]
 gi|295921350|gb|ADG61701.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Moraxella catarrhalis
           RH4]
 gi|326559649|gb|EGE10063.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Moraxella
           catarrhalis 7169]
 gi|326560011|gb|EGE10406.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Moraxella
           catarrhalis 46P47B1]
 gi|326566929|gb|EGE17067.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Moraxella
           catarrhalis 12P80B1]
 gi|326572683|gb|EGE22672.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Moraxella
           catarrhalis CO72]
 gi|326575068|gb|EGE24997.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Moraxella
           catarrhalis O35E]
          Length = 489

 Score =  369 bits (946), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 197/474 (41%), Positives = 291/474 (61%), Gaps = 28/474 (5%)

Query: 12  HMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTC 70
           H + +      VP++ ++ + GCQMN YDS +M D+   S G    N ++DAD++++NTC
Sbjct: 23  HEIREADRDTAVPKKVYIVTQGCQMNEYDSQKMGDVLGSSHGMVITNDINDADVLIMNTC 82

Query: 71  HIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGP 130
            IREKA EKV+S LGR R LK    ++  +L++ V GCVA  EG+ I +R+P V++V GP
Sbjct: 83  SIREKAQEKVFSELGRWRKLK----EKNPNLVIGVGGCVASQEGDNIQKRAPYVDMVFGP 138

Query: 131 QTYYRLPELLE--------------RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGV 176
           QT +RLPEL E              + R G  VVD  +   +KF+ L        R  G 
Sbjct: 139 QTLHRLPELYESTTNQAKTDMGQIPKNRIG--VVDVSFPSIEKFDFLP-----EPRVEGY 191

Query: 177 TAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR 236
           TAF++I EGC K+C+FCVVPYTRG E+SR L  V+ E   L + GV E+ LLGQNVN +R
Sbjct: 192 TAFVSIMEGCSKYCSFCVVPYTRGEELSRPLDDVLAEIDSLAEQGVREVNLLGQNVNGYR 251

Query: 237 GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQ 296
           G+  DG  C FS+LL+ +S I G+ R+RYTTSHP + +D +I+A+  +D L+ +LHLP+Q
Sbjct: 252 GEKDDGSICRFSELLHYVSYIDGIERIRYTTSHPLEFTDDIIEAYQSIDKLVSHLHLPIQ 311

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
           SGS+++L +M R HT   Y   I ++R +RPD+ +SSDFI+GFPGETD+DF  T+     
Sbjct: 312 SGSNQVLAAMKRNHTVDVYMNQIAKLRKIRPDLHLSSDFIIGFPGETDEDFLQTLQFAKD 371

Query: 357 IGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEV 416
           + +  ++SF YS R GTP S++ + V    K +RL   Q+ ++       +A VGQ + V
Sbjct: 372 LDFDHSYSFIYSKRPGTPASDLPDDVSLETKKQRLAVFQELIKRSTFEKTEAMVGQTLRV 431

Query: 417 LIEKHG-KEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITD-VKISTLYGELV 468
           L E+   + +G L G +   +SV+  +    +G  + ++IT  + +  + GELV
Sbjct: 432 LAEEPANRRQGYLHGTADNTRSVIFKADTDLLGKFVMIKITKAISMHLVEGELV 485


>gi|323495441|ref|ZP_08100518.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Vibrio
           brasiliensis LMG 20546]
 gi|323310364|gb|EGA63551.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Vibrio
           brasiliensis LMG 20546]
          Length = 474

 Score =  368 bits (945), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 200/447 (44%), Positives = 287/447 (64%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS +M D+   + GYE     ++AD+++LNTC IREKA EKV+  
Sbjct: 3   KKLLIKTWGCQMNEYDSSKMADLLNAANGYELTEEPEEADVLLLNTCSIREKAQEKVFHQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK+ +      +++ V GCVA  EG+ I  R+P V+V+ GPQT +RLPE+++++
Sbjct: 63  LGRWKTLKDKK----PGVVIGVGGCVATQEGDHIRERAPFVDVIFGPQTLHRLPEMIKQS 118

Query: 144 RFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           +  +  V+D  +   +KF+RL        R  G TAF++I EGC K+CT+CVVPYTRG E
Sbjct: 119 QSDEAPVMDISFPEIEKFDRLP-----EPRAEGATAFVSIMEGCSKYCTYCVVPYTRGEE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR +  V+ E  +L D GV E+ LLGQNVNA+RG   DG+ C+F++LL  ++ I G+ R
Sbjct: 174 VSRPMDDVLFEIAQLADQGVREVNLLGQNVNAYRGPMHDGDICSFAELLRLVASIDGIDR 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP + +D +I  + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II ++
Sbjct: 234 IRFTTSHPLEFTDDIIAVYEDTPELVSFLHLPVQSGSDRILTMMKRPHTAIEYKSIIRKL 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R  RPDI ISSDFIVGFPGET  D + TM L+  + +  +FSF +SPR GTP ++    V
Sbjct: 294 RKARPDIQISSDFIVGFPGETAKDHQDTMKLIKDVDFDMSFSFIFSPRPGTPAADYPCDV 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441
            E  K ERL  LQ+ +  Q + ++   +G    VL+E   K+   +L  R+   + V   
Sbjct: 354 PEQEKKERLYELQQTVNAQAMRYSRLMLGTEQRVLVEGPSKKNLMELRARTENNRVVNFE 413

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                IG  + V+ITDV  ++L GELV
Sbjct: 414 GNAELIGQFVDVKITDVFANSLRGELV 440


>gi|37679101|ref|NP_933710.1| 2-methylthioadenine synthetase [Vibrio vulnificus YJ016]
 gi|81758131|sp|Q7MN00|MIAB_VIBVY RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|37197843|dbj|BAC93681.1| 2-methylthioadenine synthetase [Vibrio vulnificus YJ016]
          Length = 474

 Score =  368 bits (945), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 198/447 (44%), Positives = 287/447 (64%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS +M D+   + GYE     ++AD+++LNTC IREKA EKV+  
Sbjct: 3   KKLLIKTWGCQMNEYDSSKMADLLNAANGYELTEEPEEADVLLLNTCSIREKAQEKVFHQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK+ +      +++ V GCVA  EG+ I  R+P V+V+ GPQT +RLPE+++++
Sbjct: 63  LGRWKTLKDKK----PGVVIGVGGCVATQEGDHIRERAPFVDVIFGPQTLHRLPEMIKQS 118

Query: 144 RF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           +     V+D  +   +KF+ L        R  G TAF++I EGC K+CT+CVVPYTRG E
Sbjct: 119 QSEDAPVMDISFPEIEKFDSLP-----EPRAEGATAFVSIMEGCSKYCTYCVVPYTRGEE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR +  V+ E  +L + GV E+ LLGQNVNA+RG   DGE C+F++LL  ++ I G+ R
Sbjct: 174 VSRPMDDVLYEIAQLAEQGVREVNLLGQNVNAYRGPMHDGEICSFAELLRLVASIDGIDR 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP + +D +I  + D   L+ +LHLPVQSGSDRIL  M R HT  EY+ II ++
Sbjct: 234 IRFTTSHPLEFTDDIIAVYEDTPELVSFLHLPVQSGSDRILTMMKRPHTGIEYKSIIRKL 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R  RPDI ISSDFIVGFPGETD DF+ TM L+  + +  +FSF +SPR GTP ++    +
Sbjct: 294 RKARPDIQISSDFIVGFPGETDKDFQDTMKLIKDVDFDMSFSFIFSPRPGTPAADYPCDL 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441
            E  K ERL  LQ+++  Q + ++   +G    VL+E   K+   +L  R+   + V   
Sbjct: 354 SEETKKERLYELQQQINAQAMRYSRLMLGTEQRVLVEGPSKKNLMELRARTENNRVVNFE 413

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                IG  + V+ITDV  ++L GE+V
Sbjct: 414 GSADLIGQFVDVKITDVFANSLRGEIV 440


>gi|237747925|ref|ZP_04578405.1| tRNA modifying enzyme [Oxalobacter formigenes OXCC13]
 gi|229379287|gb|EEO29378.1| tRNA modifying enzyme [Oxalobacter formigenes OXCC13]
          Length = 461

 Score =  368 bits (945), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 198/450 (44%), Positives = 287/450 (63%), Gaps = 14/450 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ F+K++GCQMN YDS +M D+   + GY R +  ++ADLI+LNTC +REKA EKV+S 
Sbjct: 16  KKVFIKTFGCQMNEYDSGKMADLLEVTDGYIRTDKAEEADLILLNTCSVREKAQEKVFSD 75

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-ER 142
           LGR      +  ++  DL++ V+GCVA  EGE I++R+P VN+V GPQT +RLP+++ E 
Sbjct: 76  LGR---FNKTLRRKNPDLIIGVSGCVASQEGEAIVKRAPYVNIVFGPQTLHRLPDMIHEY 132

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            + G   +DT +   +KF+ L        R    TA+++I EGC KFC++C+VPYTRG E
Sbjct: 133 EKTGDAQIDTSFPEIEKFDHLPPA-----RVEMPTAYVSIMEGCSKFCSYCIVPYTRGAE 187

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR L  V+ E   L + GV EITLLGQNVNA+RG    GE   F+ L+ ++++I G+ R
Sbjct: 188 VSRPLEDVLVEIIGLAEQGVKEITLLGQNVNAYRGAMAGGEIADFALLIETVADIPGIER 247

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+ TSHP++ +  LI  +  +  L+ +L+LP Q GSDRIL +M R +T  EY+ II R+
Sbjct: 248 IRFVTSHPKEFTQRLIDVYERVPQLVSHLYLPAQHGSDRILAAMKRGYTVLEYKSIIRRL 307

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           +++RPD+ +SSDFIVGFPGETD DF A M L+D I +  +FSF YSPR GTP + +   +
Sbjct: 308 KAIRPDLLVSSDFIVGFPGETDADFDAMMKLIDDIDFDNSFSFLYSPRPGTPAAALPIDI 367

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSVVL- 440
             +V+ +RL  LQ ++ EQ    N A VG+   VLIE    +  G++ GR+   + V + 
Sbjct: 368 PLDVRKDRLQRLQTRIEEQTRQHNMAMVGKTERVLIEGLSQRNPGQIQGRTENNRVVHIP 427

Query: 441 --NSKNHNIGDIIKVRITDVKISTLYGELV 468
             +     IG II V IT+     L G L 
Sbjct: 428 GGDDPKQWIGKIIDVDITETLNFALRGILT 457


>gi|126666981|ref|ZP_01737957.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Marinobacter sp. ELB17]
 gi|126628697|gb|EAZ99318.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Marinobacter sp. ELB17]
          Length = 448

 Score =  368 bits (945), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 198/449 (44%), Positives = 284/449 (63%), Gaps = 19/449 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ F+K++GCQMN YDS RM D+    +  E  +S +DAD+++LNTC IREKA EKV+  
Sbjct: 3   KKLFIKTHGCQMNEYDSSRMADLLKVGEAVEMTDSPEDADILLLNTCSIREKAQEKVFHQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR +NLK +  K G  L++ V GCVA  EG+ I+ R+P V++V GPQT +RLP ++   
Sbjct: 63  LGRWKNLKKN--KPG--LIIGVGGCVASQEGQAIIDRAPFVDMVFGPQTLHRLPAMITEV 118

Query: 144 RF---GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           R    G  VVD  +   +KF+ L   + G +   G +AF++I EGC K+CTFCVVPYTRG
Sbjct: 119 RAKGNGVGVVDVSFPEIEKFDNLP--EPGAD---GPSAFVSIMEGCSKYCTFCVVPYTRG 173

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR    V+ E   L    V EI LLGQNVNA+RG   DG+    ++L+  ++ I G+
Sbjct: 174 EEVSRPADDVIAEVAHLASQNVREINLLGQNVNAYRGDTHDGDVMDLAELITLIATIDGI 233

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+RYTTSHP + +D LI  +  +  L+ +LHLPVQSGSDRIL +M R HTA EY+  + 
Sbjct: 234 DRIRYTTSHPVEFTDALIDVYEQVPELVSHLHLPVQSGSDRILSAMKRGHTALEYKSKLR 293

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           R+R +RPDI+ SSDFI+GFPGET+ DF  TM L++ IG+  +FSF YS R GTP S++ +
Sbjct: 294 RLRKIRPDISFSSDFIIGFPGETEKDFEDTMKLINDIGFDMSFSFIYSARPGTPASDLPD 353

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSVV 439
             +  VK +RL  LQ ++ +  +  +   VG    +L+     K+ G+  GR+    + +
Sbjct: 354 DTEMAVKKQRLKILQDRINQTVMDISRKMVGTTQRILVTGLSKKDPGEFSGRTE--NNRI 411

Query: 440 LNSKNHN---IGDIIKVRITDVKISTLYG 465
           +N ++ N   IG  I V I +   ++L G
Sbjct: 412 VNFRHENSAAIGHFIDVEIVEAYSNSLRG 440


>gi|318604777|emb|CBY26275.1| tRNA-i(6)A37 methylthiotransferase [Yersinia enterocolitica subsp.
           palearctica Y11]
          Length = 461

 Score =  368 bits (945), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 195/436 (44%), Positives = 276/436 (63%), Gaps = 12/436 (2%)

Query: 36  MNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSR 94
           MN YDS +M D+  S  GY+     ++ADL++LNTC IREKA EKV+S LG  + LK   
Sbjct: 1   MNEYDSSKMADLLASTHGYQLTEIPEEADLLLLNTCSIREKAQEKVFSLLGHWKLLK--- 57

Query: 95  IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR-FGKRVVDTD 153
            ++   +++ V GCVA  EGE + +R+P V+V+ GPQT +RLPE++   +     VVD  
Sbjct: 58  -EKNPGIIIGVGGCVASQEGEHLRQRAPCVDVIFGPQTLHRLPEMINHVQGTHSPVVDIS 116

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           +   +KF+RL        R  G TAF++I EGC+K+CTFCVVPYTRG E+SR    ++ E
Sbjct: 117 FPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTFCVVPYTRGEEVSRPSDDILFE 171

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
             +L   GV E+ LLGQNVNA+RG   DG+ C+F++LL  ++ I G+ R+R+TTSHP + 
Sbjct: 172 IAQLAAQGVREVNLLGQNVNAYRGATYDGDICSFAELLRLVAAIDGIDRVRFTTSHPIEF 231

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
           +D +I  + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II ++R  RPDI ISS
Sbjct: 232 TDDIIDVYRDTPELVSFLHLPVQSGSDRILTMMKRAHTALEYKAIIRKLRQARPDIQISS 291

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLC 393
           DFI+GFPGET  DF  TM LV  + +  ++SF YSPR GTP +++ + V E  K +RL  
Sbjct: 292 DFIIGFPGETQQDFEQTMKLVADVRFDTSYSFIYSPRPGTPAADLPDDVSEEEKKQRLHI 351

Query: 394 LQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNSKNHNIGDIIK 452
           LQ+++ +Q +  +   VG +  +L+E   ++   +L GR+   + V        IG  + 
Sbjct: 352 LQQRITQQAMEISREMVGTVQRILVEGTSRKNVMELAGRTENNRVVNFEGTPEMIGKFVD 411

Query: 453 VRITDVKISTLYGELV 468
           V I DV  S+L G L+
Sbjct: 412 VEIVDVYASSLRGILL 427


>gi|88798164|ref|ZP_01113750.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Reinekea sp. MED297]
 gi|88778940|gb|EAR10129.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Reinekea sp. MED297]
          Length = 452

 Score =  368 bits (944), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 193/453 (42%), Positives = 286/453 (63%), Gaps = 18/453 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ F+K++GCQMN YDS RM D+   S GYE  ++ +DAD+I+LNTC IREKA EKV+  
Sbjct: 3   KKLFIKTHGCQMNEYDSDRMADLLGESHGYELTDNENDADVILLNTCSIREKAQEKVFHQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR ++LK+    +  +L + V GCVA  EG+ I +R+P V+++ GPQT +RLP +++  
Sbjct: 63  LGRWKSLKD----KNPNLKIGVGGCVASQEGDAISQRAPHVDMIFGPQTLHRLPGMIDAT 118

Query: 144 RFGK------RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197
                      VVD  +   +KF+ L        +  GV+AF+++ EGC K+CTFCVVPY
Sbjct: 119 DAAATGSDKISVVDITFPEIEKFDHLPAP-----KSDGVSAFVSVMEGCSKYCTFCVVPY 173

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257
           TRG E+SR    V+ E   L   GV EI  LGQNVNA+RG   DG +   ++L+   ++I
Sbjct: 174 TRGEEVSRPFDDVIAEVAHLAGQGVREINFLGQNVNAYRGARHDGGEADLAELITLAAQI 233

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
            G+ R+R+TTSHP + ++ LI  + D+  L+ +LHLPVQSGS+RIL +M R H   EY  
Sbjct: 234 DGIDRIRFTTSHPVEFTESLIDVYNDVPELVSHLHLPVQSGSNRILAAMKRGHEVDEYID 293

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
            ++RIR  RPDI+ SSDFI+GFPGETD DF  TM+L+  IG+  +FSF YS R GTP S+
Sbjct: 294 KMERIRLNRPDISFSSDFIIGFPGETDQDFEDTMNLIQTIGFDHSFSFVYSARPGTPASD 353

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQ 436
           + ++  E+VK +RL  LQ+++ +Q    +   VG    +L+    +   + L GR+   +
Sbjct: 354 LPDETPESVKKQRLQILQQRITQQASQISRRMVGSTQIILVTGASERNPEDLYGRTENNR 413

Query: 437 SVVLNSKNHN-IGDIIKVRITDVKISTLYGELV 468
           +      + + IG  ++VRIT+   ++L GE++
Sbjct: 414 NTFFTCDDQSLIGKFVQVRITEAYANSLRGEII 446


>gi|187925302|ref|YP_001896944.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia phytofirmans
           PsJN]
 gi|229890466|sp|B2SYI5|MIAB_BURPP RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|187716496|gb|ACD17720.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia phytofirmans
           PsJN]
          Length = 457

 Score =  368 bits (944), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 195/455 (42%), Positives = 293/455 (64%), Gaps = 20/455 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ +VK++GCQMN YDS +M D+   ++G  + ++ +DAD+I+ NTC +REKA EKV+S 
Sbjct: 3   KKVYVKTFGCQMNEYDSDKMVDVLGAAEGLVKTDTPEDADVILFNTCSVREKAQEKVFSD 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR+R LK +      +L++ V GCVA  EG  I+ R+P V++V GPQT +RLP+++++ 
Sbjct: 63  LGRVRELKEA----NPNLIIGVGGCVASQEGAAIVSRAPYVDLVFGPQTLHRLPQMIDKR 118

Query: 144 R-FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           R  G+  VD  +   +KF+ L        R  G +AF++I EGC K+C++CVVPYTRG E
Sbjct: 119 RESGRAQVDISFPEIEKFDHLPPA-----RVDGPSAFVSIMEGCSKYCSYCVVPYTRGEE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL---DGEKCTFSDLLYSLSEIKG 259
           +SR L  V+ E   L D GV E+TLLGQNVNA+R  GL     E   F+ L+  +++I G
Sbjct: 174 VSRPLDDVLTEIAGLADQGVREVTLLGQNVNAYRA-GLTLGSTEIADFAQLIEYVADIPG 232

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           + R+RYTTSHP++ +  LI  +  +  L+ +LHLPVQ GSDRIL +M R +T  EY+ +I
Sbjct: 233 IERIRYTTSHPKEFTQRLIDTYAKVPKLVSHLHLPVQHGSDRILMAMKRGYTVLEYKSVI 292

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            ++R++RPD+++S+D IVGFPGET++DF   M LV ++ Y  +FSF YSPR GTP +N+ 
Sbjct: 293 RKLRAIRPDLSLSTDMIVGFPGETEEDFDKMMALVHEMKYDTSFSFIYSPRPGTPAANLH 352

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSV 438
           +     VK +RL  LQ  + E     +D+ VG+I  +L+E+   K+  +L GR+   + V
Sbjct: 353 DDTPREVKLKRLQHLQATIEENVQRISDSMVGKIERILVERPARKDPNELAGRTENNRVV 412

Query: 439 ----VLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
                + S    IG ++ V+I      +L GELV+
Sbjct: 413 NFPAPIASHARLIGQMVDVKIVKAYPHSLRGELVL 447


>gi|149907590|ref|ZP_01896337.1| tRNA-i(6)A37 modification enzyme MiaB [Moritella sp. PE36]
 gi|149809260|gb|EDM69189.1| tRNA-i(6)A37 modification enzyme MiaB [Moritella sp. PE36]
          Length = 475

 Score =  368 bits (944), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 195/447 (43%), Positives = 282/447 (63%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQ-GYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS +M D+  ++ G+E  ++ ++AD+++LNTC IREKA EKV+  
Sbjct: 3   KKLHIKTWGCQMNEYDSSKMADLLNAENGFELTDNPEEADVLLLNTCSIREKAQEKVFHQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK    K    L++ V GCVA  EG  I +R+PIVN+V GPQT +RLPE++  A
Sbjct: 63  LGRWKKLK----KRNPKLIIGVGGCVASQEGAAIQKRAPIVNLVFGPQTLHRLPEMIVDA 118

Query: 144 RFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           + GK+ +VD  +   +KF+RL        R  GV+AF++I EGC K+C+FCVVPYTRG E
Sbjct: 119 QAGKKGLVDVSFPEIEKFDRLP-----EPRADGVSAFVSIMEGCSKYCSFCVVPYTRGEE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR L  V+ E  +L + GV E+ LLGQN NA+RG   DG+ C+F+DLL  ++ I G+ R
Sbjct: 174 VSRPLDDVLYEIAQLAEQGVREVNLLGQNANAFRGDMHDGDICSFADLLRYVAAIDGIDR 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +RYTTSHP + +  +I+ + D   L+ +LHLPVQSGSDRIL  M R HT  EY+ +I ++
Sbjct: 234 IRYTTSHPIEFTSDIIEVYKDTPELVSHLHLPVQSGSDRILTLMKRAHTTLEYKSLIRKL 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R  RP + +SSDFI+GFPGE+  DF  TM L++ I Y  +FSF YS R GTP +++ + V
Sbjct: 294 RKARPGLVMSSDFIIGFPGESKQDFADTMKLIEDIEYDISFSFIYSARPGTPAADLPDDV 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441
               K ERL  LQ ++ +         V     +L+E   K+   +L GR+   + V   
Sbjct: 354 SLEEKKERLKILQTRISQMSQKIGRDMVNTTQRILVEGPSKKNIMELTGRTENNRVVNFE 413

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                IG  + V I DV  +++ G  +
Sbjct: 414 GSPDLIGTFVDVDIVDVFPNSIRGVFI 440


>gi|262190517|ref|ZP_06048761.1| tRNA-i(6)A37 methylthiotransferase [Vibrio cholerae CT 5369-93]
 gi|262033590|gb|EEY52084.1| tRNA-i(6)A37 methylthiotransferase [Vibrio cholerae CT 5369-93]
          Length = 474

 Score =  368 bits (944), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 199/447 (44%), Positives = 290/447 (64%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS +M D+   + GYE     ++AD+++LNTC IREKA EKV+  
Sbjct: 3   KKLLIKTWGCQMNEYDSSKMADLLNAANGYELTEIPEEADVLLLNTCSIREKAQEKVFHQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK+ +      +++ V GCVA  EG+ I  R+P V+V+ GPQT +RLPE+++++
Sbjct: 63  LGRWKTLKDKK----PGVVIGVGGCVATQEGDSIRDRAPYVDVIFGPQTLHRLPEMIKQS 118

Query: 144 RFG-KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           +     V+D  +   +KF+RL        R  G TAF++I EGC K+CT+CVVPYTRG E
Sbjct: 119 QTSDAPVMDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCSKYCTYCVVPYTRGEE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR +  V+ E  +L + GV E+ LLGQNVNA+RG   DG  C+F++LL  ++ I G+ R
Sbjct: 174 VSRPMDDVLFEIAQLAEQGVREVNLLGQNVNAYRGATHDGGICSFAELLRLVATIDGIDR 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP + +D +I  + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II ++
Sbjct: 234 IRFTTSHPLEFTDDIIAVYEDTPELVSFLHLPVQSGSDRILTMMKRPHTAIEYKSIIRKL 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R  RPDI ISSDFIVGFPGETD DF+ TM L+  + +  +FSF +SPR GTP ++   ++
Sbjct: 294 RKARPDIQISSDFIVGFPGETDKDFQDTMKLIRDVDFDMSFSFIFSPRPGTPAADYPCEL 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441
            E VK ERL  LQ+++  Q + ++   +G    +L+E   K+   +L GR+   + V   
Sbjct: 354 SEEVKKERLYELQQQINSQAMRYSRLMLGTEQRILVEGPSKKDLMELRGRTENNRVVNFE 413

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                IG  + V+I DV  ++L GEL+
Sbjct: 414 GSPDLIGQFVDVKIVDVFPNSLRGELL 440


>gi|326562493|gb|EGE12810.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Moraxella
           catarrhalis 103P14B1]
 gi|326568692|gb|EGE18763.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Moraxella
           catarrhalis BC7]
 gi|326568869|gb|EGE18939.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Moraxella
           catarrhalis BC8]
          Length = 489

 Score =  368 bits (944), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 197/474 (41%), Positives = 290/474 (61%), Gaps = 28/474 (5%)

Query: 12  HMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTC 70
           H + +      VP++ ++ + GCQMN YDS +M D+   S G    N ++DAD++++NTC
Sbjct: 23  HEIREADRDTAVPKKVYIVTQGCQMNEYDSQKMGDVLGSSHGMVITNDINDADVLIMNTC 82

Query: 71  HIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGP 130
            IREKA EKV+S LGR R LK    ++  +L++ V GCVA  EG+ I +R+P V++V GP
Sbjct: 83  SIREKAQEKVFSELGRWRKLK----EKNPNLVIGVGGCVASQEGDNIQKRAPYVDMVFGP 138

Query: 131 QTYYRLPELLE--------------RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGV 176
           QT +RLPEL E              + R G  VVD  +   +KF+ L        R  G 
Sbjct: 139 QTLHRLPELYESTTNQAKTDMGQIPKNRIG--VVDVSFPSIEKFDFLP-----EPRVEGY 191

Query: 177 TAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR 236
           TAF++I EGC K+C+FCVVPYTRG E+SR L  V+ E   L + GV E+ LLGQNVN +R
Sbjct: 192 TAFVSIMEGCSKYCSFCVVPYTRGEELSRPLDDVLAEIDSLAEQGVREVNLLGQNVNGYR 251

Query: 237 GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQ 296
           G+  DG  C FS+LL+ +S I G+ R+RYTTSHP + +D +I+A+  +D L+ +LHLP+Q
Sbjct: 252 GEKDDGSICRFSELLHYVSYIDGIERIRYTTSHPLEFTDDIIEAYQSIDKLVSHLHLPIQ 311

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
           SGS+++L +M R HT   Y   I ++R +RPD+ +SSDFI+GFPGETD+DF  T+     
Sbjct: 312 SGSNQVLAAMKRNHTVDVYMNQIAKLRKIRPDLHLSSDFIIGFPGETDEDFLQTLQFAKD 371

Query: 357 IGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEV 416
           + +  ++SF YS R GTP S++ + V    K +RL   Q+ ++        A VGQ + V
Sbjct: 372 LDFDHSYSFIYSKRPGTPASDLPDDVSLETKKQRLAVFQELIKRSTFDKTQAMVGQTLRV 431

Query: 417 LIEKHG-KEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITD-VKISTLYGELV 468
           L E+   + +G L G +   +SV+  +    +G  + ++IT  + +  + GELV
Sbjct: 432 LAEEPANRRQGYLHGTADNTRSVIFKADTDLLGKFVMIKITKAISMHLVEGELV 485


>gi|78484818|ref|YP_390743.1| tRNA-i(6)A37 modification enzyme MiaB [Thiomicrospira crunogena
           XCL-2]
 gi|123741657|sp|Q31IF4|MIAB_THICR RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|78363104|gb|ABB41069.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Thiomicrospira crunogena
           XCL-2]
          Length = 477

 Score =  367 bits (943), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 188/457 (41%), Positives = 287/457 (62%), Gaps = 23/457 (5%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
            F+K+YGCQMN YDS RM  +   + G   V + ++AD+++LNTC +REKA EKV+  LG
Sbjct: 15  LFIKTYGCQMNEYDSDRMAKLLEKTYGLNLVETPEEADMLLLNTCSVREKAQEKVFDELG 74

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA-- 143
           R +  K ++     + ++ V GCVA  EG+ I +R+P+V+V+ GPQT +RLP ++E A  
Sbjct: 75  RWKKWKAAK----PNRVIGVGGCVASQEGDVIRKRAPLVDVIFGPQTLHRLPAMIEEALA 130

Query: 144 ---------RFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC 193
                    +  KR ++D  +   +KF+ L+  +       GV+AF+++ EGC K+CTFC
Sbjct: 131 LRTATEQDKKLKKRAIIDISFPEIEKFDNLAEPESN-----GVSAFVSVMEGCSKYCTFC 185

Query: 194 VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS 253
           VVPYTRG E SR  S V+ E   L   GV E+ LLGQNVNA+RG+  DGE    + L+++
Sbjct: 186 VVPYTRGEEFSRPFSDVMAEIESLAKQGVREVNLLGQNVNAYRGEMPDGEMADLAVLIHA 245

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
           +  ++G+ R+R+TTSHP +M+  LI  + ++  L+ +LHLP+QSGSDR+L  M R H A 
Sbjct: 246 VRAVEGIDRIRFTTSHPNEMTQSLIDCYAEVPELVSHLHLPIQSGSDRVLAMMKRNHMAI 305

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
           EY+  I +I+ +RPD+++S DFI+GFPGET DDF+ T+ LV ++ Y ++FSF YSPR GT
Sbjct: 306 EYKATIRKIKKIRPDLSLSGDFIIGFPGETCDDFKETLALVKEMNYDRSFSFIYSPRPGT 365

Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRS 432
           P +++ + V+ ++K  RL  LQ  L EQ  + ++  VG    VL+E+  +    ++ GR+
Sbjct: 366 PAASLPDDVELHMKKRRLQALQAMLNEQTAAISEGMVGTTQRVLVERLSRNSTNEVSGRT 425

Query: 433 PWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
              + V        IG  + V I +   ++L G+LV 
Sbjct: 426 ENNRVVNFEGPPELIGQFVDVLIEEAYANSLKGKLVA 462


>gi|226951972|ref|ZP_03822436.1| tRNA-i(6)A37 modification enzyme MiaB [Acinetobacter sp. ATCC
           27244]
 gi|294649236|ref|ZP_06726674.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Acinetobacter
           haemolyticus ATCC 19194]
 gi|226837310|gb|EEH69693.1| tRNA-i(6)A37 modification enzyme MiaB [Acinetobacter sp. ATCC
           27244]
 gi|292824903|gb|EFF83668.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Acinetobacter
           haemolyticus ATCC 19194]
          Length = 483

 Score =  367 bits (943), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 197/455 (43%), Positives = 293/455 (64%), Gaps = 20/455 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ ++++ GCQMN YDS RM D+   S GY   ++ ++AD++++NTC IREKA EKV+S 
Sbjct: 31  KKLYIETQGCQMNEYDSHRMADLLGDSHGYVLTDNPNEADILLMNTCSIREKAQEKVFSG 90

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER- 142
           LGR R LK    ++  DL++ V GCVA  EG+ I +R+P V++V GPQT +RLP++L++ 
Sbjct: 91  LGRWRKLK----EKNPDLVIGVGGCVASQEGDNIQKRAPYVDMVFGPQTLHRLPQMLDQH 146

Query: 143 -ARFGK------RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
            A+  K      ++VD  +   +KF+ L        R  G  AF++I EGC K+C+FCVV
Sbjct: 147 QAQVEKPKKEKIKLVDISFPDIEKFDFLP-----EPRVEGFKAFVSIMEGCSKYCSFCVV 201

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
           PYTRG E+SR L  V+ E   L + GV EI+LLGQNVN +RG+  +G  CTF +LL  ++
Sbjct: 202 PYTRGEEVSRPLDDVLAEIAGLAEKGVREISLLGQNVNGYRGETFEGGICTFPELLRLVA 261

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
           EI G+ RLRYTTSHP + SD LI+ + DL  ++ +LHLPVQSGS+ +L++M R HT   Y
Sbjct: 262 EIPGIGRLRYTTSHPLEFSDELIQCYRDLPQMVSHLHLPVQSGSNDVLQAMKRNHTIDVY 321

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
              I ++R VRPD+ +SSDFI+GFPGETD  F  T+  +  + +  ++SF YS R GTP 
Sbjct: 322 IDKIAKLRKVRPDMHLSSDFIIGFPGETDQHFAETLQFIKDLDFDHSYSFVYSKRPGTPA 381

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPW 434
           S++ +   E VK +RL  +Q+ ++   +   DA +G+I  VLIEK   K+   L+G +  
Sbjct: 382 SDLPDDTPEQVKKDRLAQVQEVIKRSSIDKTDAMLGKIERVLIEKVSDKDPNILIGTADN 441

Query: 435 LQSVVLNSKNHNIGDIIKVRITDVK-ISTLYGELV 468
            + V        +G   ++ IT++K ++ +YGEL+
Sbjct: 442 TRLVTFIGDAAWVGRFAEIEITEIKTLNLVYGELL 476


>gi|27363745|ref|NP_759273.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Vibrio
           vulnificus CMCP6]
 gi|81449180|sp|Q8DFE8|MIAB_VIBVU RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|27359861|gb|AAO08800.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Vibrio vulnificus CMCP6]
          Length = 474

 Score =  367 bits (943), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 197/447 (44%), Positives = 287/447 (64%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS +M D+   + GYE     ++AD+++LNTC IREKA EKV+  
Sbjct: 3   KKLLIKTWGCQMNEYDSSKMADLLNAANGYELTEEPEEADVLLLNTCSIREKAQEKVFHQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK+ +      +++ V GCVA  EG+ I  R+P V+V+ GPQT +RLPE+++++
Sbjct: 63  LGRWKTLKDKK----PGVVIGVGGCVATQEGDHIRERAPFVDVIFGPQTLHRLPEMIKQS 118

Query: 144 RF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           +     V+D  +   +KF+ L        R  G TAF++I EGC K+CT+CVVPYTRG E
Sbjct: 119 QSEDAPVMDISFPEIEKFDSLP-----EPRAEGATAFVSIMEGCSKYCTYCVVPYTRGEE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR +  V+ E  +L + GV E+ LLGQNVNA+RG   DGE C+F++LL  ++ I G+ R
Sbjct: 174 VSRPMDDVLYEIAQLAEQGVREVNLLGQNVNAYRGPTHDGEICSFAELLRLVASIDGIDR 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP + +D +I  + D   L+ +LHLPVQSGSDRIL  M R HT  EY+ II ++
Sbjct: 234 IRFTTSHPLEFTDDIIAVYEDTPELVSFLHLPVQSGSDRILTMMKRPHTGIEYKSIIRKL 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R  RPDI ISSDFIVGFPGE+D DF+ TM L+  + +  +FSF +SPR GTP ++    +
Sbjct: 294 RKARPDIQISSDFIVGFPGESDKDFQDTMKLIKDVDFDMSFSFIFSPRPGTPAADYPCDL 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441
            E  K ERL  LQ+++  Q + ++   +G    VL+E   K+   +L  R+   + V   
Sbjct: 354 SEETKKERLYELQQQINAQAMRYSRLMLGTEQRVLVEGPSKKNLMELRARTENNRVVNFE 413

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                IG  + V+ITDV  ++L GE+V
Sbjct: 414 GSADLIGQFVDVKITDVFANSLRGEIV 440


>gi|260774885|ref|ZP_05883786.1| tRNA-i(6)A37 methylthiotransferase [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260609140|gb|EEX35298.1| tRNA-i(6)A37 methylthiotransferase [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 474

 Score =  367 bits (943), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 197/447 (44%), Positives = 288/447 (64%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS +M D+   + GYE     ++AD+++LNTC IREKA EKV+  
Sbjct: 3   KKLLIKTWGCQMNEYDSSKMADLLNAANGYELTEEPEEADVLLLNTCSIREKAQEKVFHQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK+ +      +++ V GCVA  EG+ I  R+P V+V+ GPQT +RLPE+++++
Sbjct: 63  LGRWKTLKDKK----EGVVIGVGGCVATQEGDHIRERAPFVDVIFGPQTLHRLPEMIKQS 118

Query: 144 RFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           +  +  V+D  +   +KF+RL        R  G TAF++I EGC K+CT+CVVPYTRG E
Sbjct: 119 QSNEAPVMDISFPEIEKFDRLP-----EPRAEGATAFVSIMEGCSKYCTYCVVPYTRGEE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR +  V+ E  +L + GV E+ LLGQNVNA+RG   +G+ C+F++LL  ++ I G+ R
Sbjct: 174 VSRPMDDVLFEIAQLAEQGVREVNLLGQNVNAYRGPTHEGDICSFAELLRLVASIDGIDR 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP + +D +I  + D   L+ +LHLPVQSGSDRIL  M R HT  EY+ II ++
Sbjct: 234 IRFTTSHPLEFTDDIIAVYEDTPELVSFLHLPVQSGSDRILTMMKRPHTGIEYKSIIRKL 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R  RPDI ISSDFIVGFPGE+D D +ATM L+  + +  +FSF +SPR GTP ++    +
Sbjct: 294 RKARPDIQISSDFIVGFPGESDMDHQATMKLIKDVDFDMSFSFIFSPRPGTPAADYPCDL 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441
            E  K ERL  LQ+ +  Q + F+   +G    VL+E   K+   +L  R+   + V   
Sbjct: 354 SEQTKKERLYELQQTVNAQAMRFSRLMLGTEQRVLVEGPSKKNLMELRARTENNRVVNFE 413

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                IG  + V+ITDV  ++L GE+V
Sbjct: 414 GNAELIGQFVDVKITDVFANSLRGEIV 440


>gi|91785150|ref|YP_560356.1| tRNA-i(6)A37modification enzyme MiaB [Burkholderia xenovorans
           LB400]
 gi|123168088|sp|Q13UD5|MIAB_BURXL RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|91689104|gb|ABE32304.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia xenovorans
           LB400]
          Length = 457

 Score =  367 bits (942), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 195/455 (42%), Positives = 292/455 (64%), Gaps = 20/455 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ +VK++GCQMN YDS +M D+   ++G  + ++ +DAD+I+ NTC +REKA EKV+S 
Sbjct: 3   KKVYVKTFGCQMNEYDSDKMVDVLGAAEGLVKTDTPEDADVILFNTCSVREKAQEKVFSD 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR+R LK +      +L++ V GCVA  EG  I+ R+P V++V GPQT +RLP+++++ 
Sbjct: 63  LGRVRELKEA----NPNLIIGVGGCVASQEGASIVARAPYVDLVFGPQTLHRLPQMIDKR 118

Query: 144 R-FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           R  G+  VD  +   +KF+ L        R  G +AF++I EGC K+C++CVVPYTRG E
Sbjct: 119 RESGRAQVDISFPEIEKFDHLPPA-----RVDGPSAFVSIMEGCSKYCSYCVVPYTRGEE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL---DGEKCTFSDLLYSLSEIKG 259
           +SR L  V+ E   L D GV E+TLLGQNVNA+R  GL     E   F+ L+  +++I G
Sbjct: 174 VSRPLDDVLTEIAGLADQGVREVTLLGQNVNAYRA-GLTLGSTEIADFAQLIEYVADIPG 232

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           + R+RYTTSHP++ +  LI  +  +  L+ +LHLPVQ GSDRIL +M R +T  EY+ +I
Sbjct: 233 IERIRYTTSHPKEFTQRLIDTYAKVPKLVSHLHLPVQHGSDRILMAMKRGYTVLEYKSVI 292

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            ++R++RPD+++S+D IVGFPGET++DF   M LV ++ Y  +FSF YSPR GTP +N+ 
Sbjct: 293 RKLRAIRPDLSLSTDLIVGFPGETEEDFDKMMTLVHEMKYDTSFSFIYSPRPGTPAANLH 352

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSV 438
           +     VK  RL  LQ  + E     +D+ VG+I  +L+E+   K+  +L GR+   + V
Sbjct: 353 DDTPREVKLRRLQHLQATIEENVQRISDSMVGKIERILVERPARKDPNELAGRTENNRVV 412

Query: 439 ----VLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
                + S    IG ++ V+I      +L GELV+
Sbjct: 413 NFPAPVASHARLIGQMVDVKIVKAYPHSLRGELVL 447


>gi|110834795|ref|YP_693654.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Alcanivorax
           borkumensis SK2]
 gi|123345402|sp|Q0VN66|MIAB_ALCBS RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|110647906|emb|CAL17382.1| conserved hypothetical protein [Alcanivorax borkumensis SK2]
          Length = 445

 Score =  367 bits (942), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 194/447 (43%), Positives = 287/447 (64%), Gaps = 17/447 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ F++++GCQMN YDS RM D+   S G E  ++ ++AD+++LNTC IREKA EKV+  
Sbjct: 3   RKLFIQTHGCQMNEYDSTRMVDLLESSHGLEPTDNPEEADVLLLNTCSIREKAQEKVFHQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK+++     D+++ V GCVA  EG+ I  R+P V+VV GPQT +RLP L+ +A
Sbjct: 63  LGRWKKLKDAK----PDMIIGVGGCVASQEGDAIRDRAPYVDVVFGPQTLHRLPGLITQA 118

Query: 144 RFGKRV-VDTDYSVEDKFERLS--IVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
              + + +D  +   +KF+ L    VDG        +AF++I EGC K+CTFCVVPYTRG
Sbjct: 119 ASTRELAIDVTFPEIEKFDNLPEPSVDGP-------SAFVSIMEGCSKYCTFCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR +  V+ E + L D GV E+ LLGQNVNA++G G DG+    +DL+  + +I G+
Sbjct: 172 EEVSRPVQPVLKEIQHLADMGVREVNLLGQNVNAYQGVGADGDTLDLADLIRLIRDIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+RYTTSHP + S+ LI+ + D+  L+ +LHLPVQSGSDRIL  M R H   EY+  + 
Sbjct: 232 DRIRYTTSHPVEFSEALIQVYEDVPELVSHLHLPVQSGSDRILAMMKRNHMVLEYKSKLR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           +++ +RPDI+ SSDFI+GFPGETD DF  TM+L+  IG+  +FSF YS R GTP +++ +
Sbjct: 292 KLKRIRPDISFSSDFIIGFPGETDRDFEDTMNLIHDIGFDMSFSFIYSARPGTPAADLPD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVV 439
            VD  VK +RL  LQ+++ +     +   VG    +L++    K+ G+L GR+   + V 
Sbjct: 352 DVDMEVKKQRLAILQQRINQNVQDISRKMVGSTQRILVDGFSKKDPGQLKGRTENNRVVN 411

Query: 440 LNSKNHN-IGDIIKVRITDVKISTLYG 465
               + + IG  + V I     ++L G
Sbjct: 412 FQCDDTDLIGKFVDVTIAKAYSNSLLG 438


>gi|15640978|ref|NP_230609.1| hypothetical protein VC0962 [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121591016|ref|ZP_01678333.1| conserved hypothetical protein [Vibrio cholerae 2740-80]
 gi|147675479|ref|YP_001216435.1| hypothetical protein VC0395_A0484 [Vibrio cholerae O395]
 gi|153820006|ref|ZP_01972673.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457]
 gi|153827451|ref|ZP_01980118.1| conserved hypothetical protein [Vibrio cholerae MZO-2]
 gi|183179699|ref|ZP_02957910.1| conserved hypothetical protein [Vibrio cholerae MZO-3]
 gi|227081136|ref|YP_002809687.1| hypothetical protein VCM66_0918 [Vibrio cholerae M66-2]
 gi|229505438|ref|ZP_04394948.1| tRNA-i(6)A37 methylthiotransferase [Vibrio cholerae BX 330286]
 gi|229510892|ref|ZP_04400371.1| tRNA-i(6)A37 methylthiotransferase [Vibrio cholerae B33]
 gi|229512945|ref|ZP_04402411.1| tRNA-i(6)A37 methylthiotransferase [Vibrio cholerae TMA 21]
 gi|229518013|ref|ZP_04407457.1| tRNA-i(6)A37 methylthiotransferase [Vibrio cholerae RC9]
 gi|229523246|ref|ZP_04412653.1| tRNA-i(6)A37 methylthiotransferase [Vibrio cholerae TM 11079-80]
 gi|229525572|ref|ZP_04414977.1| tRNA-i(6)A37 methylthiotransferase [Vibrio cholerae bv. albensis
           VL426]
 gi|229529943|ref|ZP_04419333.1| tRNA-i(6)A37 methylthiotransferase [Vibrio cholerae 12129(1)]
 gi|229608457|ref|YP_002879105.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Vibrio
           cholerae MJ-1236]
 gi|254225710|ref|ZP_04919316.1| conserved hypothetical protein [Vibrio cholerae V51]
 gi|254285632|ref|ZP_04960596.1| conserved hypothetical protein [Vibrio cholerae AM-19226]
 gi|254848093|ref|ZP_05237443.1| conserved hypothetical protein [Vibrio cholerae MO10]
 gi|255744745|ref|ZP_05418696.1| tRNA-i(6)A37 methylthiotransferase [Vibrio cholera CIRS 101]
 gi|262161121|ref|ZP_06030232.1| tRNA-i(6)A37 methylthiotransferase [Vibrio cholerae INDRE 91/1]
 gi|262168624|ref|ZP_06036319.1| tRNA-i(6)A37 methylthiotransferase [Vibrio cholerae RC27]
 gi|298498922|ref|ZP_07008729.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Vibrio cholerae MAK 757]
 gi|81545216|sp|Q9KTE0|MIAB_VIBCH RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|229891023|sp|A5F2X6|MIAB_VIBC3 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|9655421|gb|AAF94124.1| conserved hypothetical protein [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121547126|gb|EAX57258.1| conserved hypothetical protein [Vibrio cholerae 2740-80]
 gi|125621718|gb|EAZ50046.1| conserved hypothetical protein [Vibrio cholerae V51]
 gi|126509457|gb|EAZ72051.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457]
 gi|146317362|gb|ABQ21901.1| conserved hypothetical protein [Vibrio cholerae O395]
 gi|149738628|gb|EDM52981.1| conserved hypothetical protein [Vibrio cholerae MZO-2]
 gi|150424494|gb|EDN16431.1| conserved hypothetical protein [Vibrio cholerae AM-19226]
 gi|183013110|gb|EDT88410.1| conserved hypothetical protein [Vibrio cholerae MZO-3]
 gi|227009024|gb|ACP05236.1| conserved hypothetical protein [Vibrio cholerae M66-2]
 gi|227012779|gb|ACP08989.1| conserved hypothetical protein [Vibrio cholerae O395]
 gi|229333717|gb|EEN99203.1| tRNA-i(6)A37 methylthiotransferase [Vibrio cholerae 12129(1)]
 gi|229339153|gb|EEO04170.1| tRNA-i(6)A37 methylthiotransferase [Vibrio cholerae bv. albensis
           VL426]
 gi|229339609|gb|EEO04624.1| tRNA-i(6)A37 methylthiotransferase [Vibrio cholerae TM 11079-80]
 gi|229344728|gb|EEO09702.1| tRNA-i(6)A37 methylthiotransferase [Vibrio cholerae RC9]
 gi|229349838|gb|EEO14792.1| tRNA-i(6)A37 methylthiotransferase [Vibrio cholerae TMA 21]
 gi|229350857|gb|EEO15798.1| tRNA-i(6)A37 methylthiotransferase [Vibrio cholerae B33]
 gi|229357661|gb|EEO22578.1| tRNA-i(6)A37 methylthiotransferase [Vibrio cholerae BX 330286]
 gi|229371112|gb|ACQ61535.1| tRNA-i(6)A37 methylthiotransferase [Vibrio cholerae MJ-1236]
 gi|254843798|gb|EET22212.1| conserved hypothetical protein [Vibrio cholerae MO10]
 gi|255737776|gb|EET93170.1| tRNA-i(6)A37 methylthiotransferase [Vibrio cholera CIRS 101]
 gi|262022742|gb|EEY41448.1| tRNA-i(6)A37 methylthiotransferase [Vibrio cholerae RC27]
 gi|262028871|gb|EEY47524.1| tRNA-i(6)A37 methylthiotransferase [Vibrio cholerae INDRE 91/1]
 gi|297543255|gb|EFH79305.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Vibrio cholerae MAK 757]
 gi|327483685|gb|AEA78092.1| tRNA-i(6)A37 methylthiotransferase [Vibrio cholerae LMA3894-4]
          Length = 474

 Score =  367 bits (941), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 199/447 (44%), Positives = 289/447 (64%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS +M D+   + GYE     ++AD+++LNTC IREKA EKV+  
Sbjct: 3   KKLLIKTWGCQMNEYDSSKMADLLNAANGYELTEIPEEADVLLLNTCSIREKAQEKVFHQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK+ +      +++ V GCVA  EG+ I  R+P V+V+ GPQT +RLPE+++++
Sbjct: 63  LGRWKTLKDKK----PGVVIGVGGCVATQEGDSIRDRAPYVDVIFGPQTLHRLPEMIKQS 118

Query: 144 RFG-KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           +     V+D  +   +KF+RL        R  G TAF++I EGC K+CT+CVVPYTRG E
Sbjct: 119 QTSDAPVMDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCSKYCTYCVVPYTRGEE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR +  V+ E  +L + GV E+ LLGQNVNA+RG   DG  C+F++LL  ++ I G+ R
Sbjct: 174 VSRPMDDVLFEIAQLAEQGVREVNLLGQNVNAYRGATHDGGICSFAELLRLVATIDGIDR 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP + +D +I  + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II ++
Sbjct: 234 IRFTTSHPLEFTDDIIAVYEDTPELVSFLHLPVQSGSDRILTMMKRPHTAIEYKSIIRKL 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R  RPDI ISSDFIVGFPGETD DF+ TM L+  + +  +FSF +SPR GTP ++    +
Sbjct: 294 RKARPDIQISSDFIVGFPGETDKDFQDTMKLIRDVDFDMSFSFIFSPRPGTPAADYPCDL 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441
            E VK ERL  LQ+++  Q + ++   +G    +L+E   K+   +L GR+   + V   
Sbjct: 354 SEEVKKERLYELQQQINSQAMRYSRLMLGTEQRILVEGPSKKDLMELRGRTENNRVVNFE 413

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                IG  + V+I DV  ++L GEL+
Sbjct: 414 GSPDLIGQFVDVKIVDVFPNSLRGELL 440


>gi|118602727|ref|YP_903942.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Candidatus Ruthia
           magnifica str. Cm (Calyptogena magnifica)]
 gi|229890637|sp|A1AX14|MIAB_RUTMC RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|118567666|gb|ABL02471.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Candidatus Ruthia
           magnifica str. Cm (Calyptogena magnifica)]
          Length = 444

 Score =  367 bits (941), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 188/452 (41%), Positives = 284/452 (62%), Gaps = 16/452 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ +++++GCQMN YDS ++ D+   S G    +    A++++LNTC IREKA EK++  
Sbjct: 2   KKLYIRTFGCQMNEYDSNKIADVLNHSHGLVLTDDAASANVLLLNTCSIREKAQEKLFHQ 61

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR R LK+    +  +L++ V GCVA  EGE IL R+P V+++ GPQT +RLP +L   
Sbjct: 62  LGRWRKLKD----KNSNLIIGVGGCVASQEGELILERAPYVDIIFGPQTLHRLPSMLNEV 117

Query: 144 RFG------KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197
                    K  +D  +   +KF+ L        +   VTAF++I EGC K+CTFC+VPY
Sbjct: 118 LTPTPGMSVKPSIDISFPEIEKFDHLP-----KPKTSSVTAFVSIMEGCSKYCTFCIVPY 172

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257
           TRG E+SR    V++E + L   GV E+ LLGQNVNA++G   DGE    + L+   ++I
Sbjct: 173 TRGEEVSRPFIDVINEVKILAIQGVREVNLLGQNVNAYQGLMDDGEIADLALLINIAAQI 232

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
            G+ R+RYTTSHP   SD LI+A+ ++  L  +LHLP+QSGSD+IL+ M R H   EY+ 
Sbjct: 233 DGIKRIRYTTSHPTQFSDSLIEAYMEVPKLASHLHLPIQSGSDKILRLMKRGHMVIEYKS 292

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
            I ++R +RPDI+ISSDFI+GFPGE + DF  TM L+D+IG+ ++FSF YS R GT  S+
Sbjct: 293 KIRKLRKIRPDISISSDFIIGFPGENEQDFLDTMTLIDEIGFDKSFSFIYSARPGTLASS 352

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQS 437
            L+ VD +VK +RL  +QK + +     + + VG + ++L+E   K++  L GR+  +++
Sbjct: 353 YLDDVDMDVKKQRLALVQKTIDKNTERISKSMVGSVQKILVENVAKKRDNLFGRTENMRN 412

Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
                    IG I+ ++IT  + ++L G L+ 
Sbjct: 413 THFKGDKSLIGQIVNIKITQGRGNSLVGNLIA 444


>gi|330811908|ref|YP_004356370.1| (Dimethylallyl)adenosine tRNA methylthiotransferase [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
 gi|327380016|gb|AEA71366.1| (Dimethylallyl)adenosine tRNA methylthiotransferase [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 442

 Score =  367 bits (941), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 194/448 (43%), Positives = 281/448 (62%), Gaps = 13/448 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ +++++GCQMN YDS RM D+    Q  E     +DAD+I+LNTC IRE+A ++VYS 
Sbjct: 3   KKLYIETHGCQMNEYDSSRMVDLLGEHQALEVTARAEDADVILLNTCSIRERAQDRVYSQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR R LK +      ++++ V GCVA  EG  I  R+P V+VV GPQT +RLPE+++ A
Sbjct: 63  LGRWRELKLA----NPEMVIAVGGCVASQEGAAIRDRAPYVDVVFGPQTLHRLPEMIDAA 118

Query: 144 RFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           R  K   VD  +   +KF+ L        R  G +A++++ EGC K+CTFCVVPYTRG E
Sbjct: 119 RSTKLPQVDVSFPEIEKFDHLP-----EPRIDGPSAYVSVMEGCSKYCTFCVVPYTRGEE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR    V+ E   L ++GV E+TLLGQNVN +RG   DG     ++L+  ++ + G+ R
Sbjct: 174 VSRPFDDVIAEIIHLAEHGVREVTLLGQNVNGYRGLTHDGRLADLAELIRVVAAVDGIDR 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +RYTTSHP + SD LI+AH ++  L+ +LHLPVQSGSDRIL +M R HTA EY+  + ++
Sbjct: 234 IRYTTSHPLEFSDSLIQAHAEVPELVKHLHLPVQSGSDRILAAMKRNHTALEYKSKLRKL 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+  P I ISSDFIVGFPGET+ DF+ TM L++ +G+  ++SF YS R GTP +++ +  
Sbjct: 294 RAAVPGICISSDFIVGFPGETEKDFQQTMKLIEDVGFDFSYSFVYSQRPGTPAADLADDT 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLN 441
            E +K ERL  LQ +L +Q    +   VG +  +L+  +  K+ G+L GR+   + V   
Sbjct: 354 PEELKKERLNALQHRLNQQGFEISRQMVGSVQRILVTDYSKKDPGELQGRTENNRIVNFR 413

Query: 442 SKNHN-IGDIIKVRITDVKISTLYGELV 468
                 IG    V I   +  +L G L+
Sbjct: 414 CDTPALIGQFADVHIDAAQPHSLRGSLI 441


>gi|253997231|ref|YP_003049295.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Methylotenera mobilis
           JLW8]
 gi|253983910|gb|ACT48768.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Methylotenera mobilis
           JLW8]
          Length = 442

 Score =  366 bits (940), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 196/450 (43%), Positives = 285/450 (63%), Gaps = 14/450 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
            P++ F+K++GCQMN YDS RM DM   S G     S DDAD+I+LNTC +REKA +KV+
Sbjct: 3   TPKKVFIKTFGCQMNEYDSSRMADMLSASDGMVETQSPDDADVILLNTCSVREKAEDKVF 62

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S LGR   LK    ++  +L++ V GCVA  EG+ I++R+P V+VV GPQT +RLPE+++
Sbjct: 63  SHLGRFIPLK----EKNPNLVIGVGGCVASQEGDNIIKRAPYVDVVFGPQTLHRLPEMIK 118

Query: 142 RAR-FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
             +  G   VD  +   +KF+ L        R  GV+AFL+I EGC K+C+FCVVPYTRG
Sbjct: 119 SKQDSGTSQVDVSFPEIEKFDHLP-----PPRVEGVSAFLSIMEGCSKYCSFCVVPYTRG 173

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR  + ++ EA +L + GV EITLLGQNVNA+R +  DG +   + L+ +++EI  +
Sbjct: 174 EEVSRPFADILTEAVQLAEQGVKEITLLGQNVNAYRTE-YDGVESDLAMLIETIAEIPQI 232

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+TTSHP +M++ LI     +  L   LHLPVQ+GSDRIL +M R +TA +++ II 
Sbjct: 233 ERIRFTTSHPNEMNERLISCFATVPKLAAQLHLPVQAGSDRILMAMKRNYTALQFKSIIR 292

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++++  P++  +SDFIVGFPGE+D DF AT+ L+  +G+  +FSF YSPR GTP + + +
Sbjct: 293 KLKAANPNLTFTSDFIVGFPGESDADFEATVKLMQDVGFDASFSFLYSPRPGTPAAFLKD 352

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSPWLQSVV 439
              + VK  RL  LQ     Q  + ++A +G    VLIE    K+   L G++   + V 
Sbjct: 353 DTSQEVKLARLDKLQTINEAQAKAISEAMLGTTQRVLIEGASWKDASLLAGKTDNNRVVD 412

Query: 440 LNSKNHNIGDIIKVRITDV-KISTLYGELV 468
           +      +   + V+ITDV     L GE+V
Sbjct: 413 IAGDASLVHQFVNVKITDVSNPRRLIGEIV 442


>gi|283479139|emb|CAY75055.1| UPF0004 protein PA3980 [Erwinia pyrifoliae DSM 12163]
          Length = 461

 Score =  366 bits (940), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 193/436 (44%), Positives = 277/436 (63%), Gaps = 12/436 (2%)

Query: 36  MNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSR 94
           MN YDS +M D+  S  GY      +DAD+++LNTC IREKA EKV+  LGR + LK + 
Sbjct: 1   MNEYDSSKMADLLNSTHGYTLTEQAEDADVLLLNTCSIREKAQEKVFGLLGRWKKLKEA- 59

Query: 95  IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR-VVDTD 153
                D+++ V GCVA  EG +I +R+  V++V GPQT +RLPE++   R  K  VVD  
Sbjct: 60  ---NPDVIIGVGGCVASQEGAQIRQRASCVDIVFGPQTLHRLPEMINSVRGTKSPVVDVS 116

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           +   +KF+R+        R  G TAF++I EGC+K+CTFCVVPYTRG E+SR    V+ E
Sbjct: 117 FPEIEKFDRMP-----EPRANGPTAFVSIMEGCNKYCTFCVVPYTRGEEVSRPADDVLFE 171

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
             +L   GV E+ LLGQNVNA+RG   DG  C+F++LL  ++ I G+ R+R+TTSHP + 
Sbjct: 172 VAQLAAQGVREVNLLGQNVNAYRGATYDGGICSFAELLRLVATIDGIDRIRFTTSHPIEF 231

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
           +D +I+ + D   L+ +LHLPVQSG+DRIL  M R HTA EY+ II ++ + RPDI ISS
Sbjct: 232 TDDIIEVYRDTPELVSFLHLPVQSGADRILTLMKRAHTALEYKAIIRKLLAARPDIQISS 291

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLC 393
           DFI+GFPGE   DF  TM LV +I +  ++SF YS R GTP +++ + V E  K +RL  
Sbjct: 292 DFIIGFPGENQADFEQTMKLVGEINFDTSYSFIYSARPGTPAADLPDDVSEEEKKQRLYI 351

Query: 394 LQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNSKNHNIGDIIK 452
           LQ ++ +Q ++++   +G +  +L+E   ++   +L GR+   + V       +IG  + 
Sbjct: 352 LQDRISQQAMAWSRRKLGTVQRILVEGTSRKSVMELAGRTECNRVVNFEGAPEHIGKFVD 411

Query: 453 VRITDVKISTLYGELV 468
           V ITDV  ++L G L+
Sbjct: 412 VEITDVYANSLRGVLL 427


>gi|289209299|ref|YP_003461365.1| RNA modification enzyme, MiaB family [Thioalkalivibrio sp. K90mix]
 gi|288944930|gb|ADC72629.1| RNA modification enzyme, MiaB family [Thioalkalivibrio sp. K90mix]
          Length = 450

 Score =  366 bits (940), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 197/447 (44%), Positives = 275/447 (61%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ +++++GCQMN YDS RM D      G ER +  + AD++++NTC IREKA EKV+S 
Sbjct: 3   RKVYIQTHGCQMNEYDSDRMLDALRELHGAERTDDPEQADVLLMNTCSIREKAQEKVFSL 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR R +K  R     ++++ V GCVA  EG+ +  R+P V++V GPQT +RLP +++  
Sbjct: 63  LGRWRQIKERR----PEVIIGVGGCVASQEGDALRERAPYVDLVFGPQTLHRLPAMIQSV 118

Query: 144 RFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           R  +  VVD  +   +KF+RL        +  G TAF+++ EGC K+C+FCVVPYTRG E
Sbjct: 119 RRERAPVVDISFPEIEKFDRLP-----EPKADGPTAFVSVMEGCSKYCSFCVVPYTRGDE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           ISR    V+ E   L   GV EI LLGQNVNA+RG   DG+    + L++ ++ + G+ R
Sbjct: 174 ISRPFDDVIAEVVALAGQGVKEINLLGQNVNAYRGPMEDGDTADLALLIHYVAAVDGIER 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP + SD LI+A+ D   L+ +LHLPVQSGSDRIL  M R HT  EY+  I R+
Sbjct: 234 IRFTTSHPVEFSDSLIQAYADEPKLVGHLHLPVQSGSDRILAQMKRGHTILEYKSKIRRL 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R  RPD+ +SSDFIVGFPGETD D  ATM L++++ +  +FSF YS R GTP +++ + V
Sbjct: 294 REARPDLDLSSDFIVGFPGETDADHAATMKLIEELHFDFSFSFIYSARPGTPAASLPDDV 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVLN 441
               K  RL  LQ  + +     N A VG I  VL+E   K   G+L  R+   + V   
Sbjct: 354 PLATKKARLAELQALIEQHGRERNQAMVGNIEPVLVEGPAKRNPGELAARTANNRIVNFA 413

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                IG +I V IT+    +L G  V
Sbjct: 414 GDPSLIGQMIPVEITEALAHSLRGRAV 440


>gi|297581341|ref|ZP_06943265.1| conserved hypothetical protein [Vibrio cholerae RC385]
 gi|297534657|gb|EFH73494.1| conserved hypothetical protein [Vibrio cholerae RC385]
          Length = 474

 Score =  366 bits (939), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 199/447 (44%), Positives = 289/447 (64%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS +M D+  +  GYE     ++AD+++LNTC IREKA EKV+  
Sbjct: 3   KKLLIKTWGCQMNEYDSSKMADLLNAVNGYELTEIPEEADVLLLNTCSIREKAQEKVFHQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK+ +      +++ V GCVA  EG+ I  R+P V+V+ GPQT +RLPE+++++
Sbjct: 63  LGRWKTLKDKK----PGVVIGVGGCVATQEGDSIRDRAPYVDVIFGPQTLHRLPEMIKQS 118

Query: 144 RFG-KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           +     V+D  +   +KF+RL        R  G TAF++I EGC K+CT+CVVPYTRG E
Sbjct: 119 QTSDAPVMDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCSKYCTYCVVPYTRGEE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR +  V+ E  +L + GV E+ LLGQNVNA+RG   DG  C+F++LL  ++ I G+ R
Sbjct: 174 VSRPMDDVLFEIAQLAEQGVREVNLLGQNVNAYRGATHDGGICSFAELLRLVATIDGIDR 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP + +D +I  + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II ++
Sbjct: 234 IRFTTSHPLEFTDDIIAVYEDTPELVSFLHLPVQSGSDRILTMMKRPHTAIEYKSIIRKL 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R  RPDI ISSDFIVGFPGETD DF+ TM L+  + +  +FSF +SPR GTP ++    +
Sbjct: 294 RKARPDIQISSDFIVGFPGETDKDFQDTMKLIRDVDFDMSFSFIFSPRPGTPAADYPCDL 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441
            E VK ERL  LQ+++  Q + ++   +G    +L+E   K+   +L GR+   + V   
Sbjct: 354 SEEVKKERLYELQQQINSQAMRYSRLMLGTEQRILVEGPSKKDLMELRGRTENNRVVNFE 413

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                IG  + V+I DV  ++L GEL+
Sbjct: 414 GSPDLIGQFVDVKIVDVFPNSLRGELL 440


>gi|91792176|ref|YP_561827.1| tRNA-i(6)A37 modification enzyme MiaB [Shewanella denitrificans
           OS217]
 gi|123357083|sp|Q12R22|MIAB_SHEDO RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|91714178|gb|ABE54104.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Shewanella denitrificans
           OS217]
          Length = 474

 Score =  366 bits (939), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 191/444 (43%), Positives = 285/444 (64%), Gaps = 12/444 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS +M D+    QGY   +   +AD+++LNTC IREKA EKV+  
Sbjct: 3   KKLHIKTWGCQMNEYDSSKMADLLDEYQGYTLTDDATEADVLLLNTCSIREKAQEKVFHQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK+   K+ G L++ V GCVA  EG+ I  R+  V+++ GPQT +RLPE++++ 
Sbjct: 63  LGRWKTLKD---KKPG-LIIGVGGCVASQEGKAIKDRAQCVDIIFGPQTLHRLPEMIDQV 118

Query: 144 RFGKRVV-DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           + G++VV D  +   +KF+RL        R  G TAF++I EGC K+C+FCVVPYTRG E
Sbjct: 119 QRGEKVVIDVSFPEIEKFDRLP-----EPRADGPTAFVSIMEGCSKYCSFCVVPYTRGEE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR    ++ E  +L + GV E+ LLGQNVNA+RG   D + CTF++LL  ++ I G+ R
Sbjct: 174 VSRPQDDIILEIAQLAEQGVREVNLLGQNVNAYRGATHDDQICTFAELLRLVASIDGIDR 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP + +  +I  + D   L+ +LHLPVQSGSDRIL  M R H A EY+ II R+
Sbjct: 234 IRFTTSHPIEFTQDIIDVYEDTPELVSFLHLPVQSGSDRILTQMKRGHMAIEYKSIIRRL 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R  R  I ISSDFI+GFPGE+ +DF  TM L++ + +  +FSF YS R GTP +++ + V
Sbjct: 294 RKAREGIQISSDFIIGFPGESAEDFADTMKLIEDVAFDHSFSFIYSARPGTPAADLPDDV 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLN 441
            +  K +RL  LQ ++ +Q + ++   +G +  +L+E    K   +L GR+   + V   
Sbjct: 354 SDEEKKQRLAILQDRITQQAMRYSRQMLGTVQRILVEGPSVKNPMELRGRTENNRVVNFE 413

Query: 442 SKNHNIGDIIKVRITDVKISTLYG 465
           + + +IG  + V I DV  ++L G
Sbjct: 414 APHTHIGSFVDVEIVDVYTNSLRG 437


>gi|255319762|ref|ZP_05360967.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Acinetobacter
           radioresistens SK82]
 gi|262380296|ref|ZP_06073450.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Acinetobacter
           radioresistens SH164]
 gi|255303081|gb|EET82293.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Acinetobacter
           radioresistens SK82]
 gi|262297742|gb|EEY85657.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Acinetobacter
           radioresistens SH164]
          Length = 485

 Score =  366 bits (939), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 196/455 (43%), Positives = 291/455 (63%), Gaps = 20/455 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ ++++ GCQMN YDS RM D+   S GY   ++  DAD++++NTC IREKA EKV+S 
Sbjct: 33  KKLYIETQGCQMNEYDSHRMADLLGDSHGYILTSNPADADILLMNTCSIREKAQEKVFSE 92

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL--- 140
           LGR R LK+    +  DL++ V GCVA  EG+ I +R+P V++V GPQT +RLP++L   
Sbjct: 93  LGRWRKLKD----QNPDLVIGVGGCVASQEGDNIQKRAPYVDMVFGPQTLHRLPQMLDQH 148

Query: 141 ----ERARFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
               E+ +  K ++VD  +   +KF+ L        R  G  AF++I EGC K+C+FCVV
Sbjct: 149 IDQLEKPKKEKIKLVDISFPDIEKFDFLP-----EPRVEGYKAFVSIMEGCSKYCSFCVV 203

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
           PYTRG E+SR L  V+ E   L + GV EI LLGQNVN +RG+  +G  CTF+DLL  ++
Sbjct: 204 PYTRGEEVSRPLDDVLAEIAGLAEKGVREINLLGQNVNGYRGETFEGTICTFADLLRLVA 263

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
           EI G+ R+RYTTSHP + +D LI+ + DL  ++ +LHLPVQSGS+ +L++M R HT   Y
Sbjct: 264 EIPGIGRVRYTTSHPLEFNDDLIQCYRDLPQMVSHLHLPVQSGSNDVLQAMKRNHTIDVY 323

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
            + I ++R VRPD+ +SSDFI+GFPGETD +F  T   + ++ +  ++SF YS R GTP 
Sbjct: 324 IEKIAKLRKVRPDMHLSSDFIIGFPGETDQNFEETYQFIQEMDFDHSYSFIYSKRPGTPA 383

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPW 434
           S + +   E VK ERL  +Q+ +++  ++  +A  G I  VLIE    ++   LVG +  
Sbjct: 384 SELADDTPEEVKKERLARVQQWIKQSSIAKTNAMQGTIQRVLIENISERDPNLLVGTADN 443

Query: 435 LQSVVLNSKNHNIGDIIKVRITDVK-ISTLYGELV 468
            + V        +G   ++ IT++K ++ +YGEL+
Sbjct: 444 TRLVTFIGDPAWVGRFAEIEITEIKTLNLVYGELL 478


>gi|260767222|ref|ZP_05876163.1| tRNA-i(6)A37 methylthiotransferase [Vibrio furnissii CIP 102972]
 gi|260617730|gb|EEX42908.1| tRNA-i(6)A37 methylthiotransferase [Vibrio furnissii CIP 102972]
 gi|315180847|gb|ADT87761.1| 2-methylthioadenine synthetase [Vibrio furnissii NCTC 11218]
          Length = 474

 Score =  365 bits (938), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 198/447 (44%), Positives = 286/447 (63%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS +M D+   + GYE     ++AD+++LNTC IREKA EKV+  
Sbjct: 3   KKLLIKTWGCQMNEYDSSKMADLLNATNGYELTEEPEEADVLLLNTCSIREKAQEKVFHQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK+ +      +++ V GCVA  EG+ I  R+P V+V+ GPQT +RLPE+++++
Sbjct: 63  LGRWKTLKDKK----PGVVIGVGGCVATQEGDHIRDRAPFVDVIFGPQTLHRLPEMIKQS 118

Query: 144 RFG-KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           +     V+D  +   +KF+RL        R  G TAF++I EGC K+CT+CVVPYTRG E
Sbjct: 119 QSDDAPVMDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCSKYCTYCVVPYTRGEE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR +  V+ E  +L + GV E+ LLGQNVNA+RG   DG  C+F++LL  ++ I G+ R
Sbjct: 174 VSRPMDDVLFEIAQLAEQGVREVNLLGQNVNAYRGPMHDGTICSFAELLRLVASIDGIDR 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP + +D +I  + D   L+ +LHLPVQSGSDRIL  M R HT  EY+ II ++
Sbjct: 234 IRFTTSHPLEFTDDIIAVYEDTPELVSFLHLPVQSGSDRILTMMKRPHTGIEYKSIIRKL 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R  RPDI ISSDFIVGFPGE+D DF+ TM L+  + +  +FSF +SPR GTP ++    +
Sbjct: 294 RKARPDIQISSDFIVGFPGESDKDFQDTMKLIRDVDFDMSFSFIFSPRPGTPAADYPCDL 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441
            E  K ERL  LQ+++  Q + F+   +G    +L+E   K+   +L GR+   + V   
Sbjct: 354 TEETKKERLYELQQQINAQAMRFSRLMMGTEQRILVEGPSKKNLMELRGRTENNRVVNFE 413

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                IG  + V I DV  ++L GELV
Sbjct: 414 GPAELIGQFVDVNIVDVFPNSLRGELV 440


>gi|304310522|ref|YP_003810120.1| 2-methylthioadenine synthetase [gamma proteobacterium HdN1]
 gi|301796255|emb|CBL44463.1| 2-methylthioadenine synthetase [gamma proteobacterium HdN1]
          Length = 445

 Score =  365 bits (938), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 189/447 (42%), Positives = 287/447 (64%), Gaps = 17/447 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ F++++GCQMN YDS RM D+  S + YER +   +AD+I+LNTC +REKA EKV+  
Sbjct: 3   KKLFIETHGCQMNEYDSARMADLLGSTEDYERTDDPAEADVILLNTCSVREKAQEKVFHQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR R LK         L++ V GCVA  EG  IL+R+P V++V GPQT +R+PE++   
Sbjct: 63  LGRWRKLKEVNPA----LVIGVGGCVASQEGSAILKRAPHVDMVFGPQTLHRIPEMMGAV 118

Query: 144 R-FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           + + K VVD  +   +KF++L           G  AF+++ EGC K+C+FCVVPYTRG E
Sbjct: 119 KMYHKPVVDVSFPEIEKFDKLPDPS-----VEGPKAFISVMEGCSKYCSFCVVPYTRGEE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR    V+ E R L   GV E+ LLGQNVNA+RG+   GE    ++L+  ++ + G+ R
Sbjct: 174 VSRHFEDVMREVRHLETLGVREVNLLGQNVNAYRGENEHGEIVDLAELIEHIAALPGIGR 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +RYTTSHP + SD L+ A+  +  L+ +LHLP QSGSDRIL +M R HT  +Y   I ++
Sbjct: 234 IRYTTSHPMECSDALVDAYRRIPKLVSHLHLPAQSGSDRILAAMKRNHTRADYLAWITKL 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           +  RPD+ +SSDFI+GFPGET+DDF  T+ L++++GY  +FSF YSPR GTP +++ + +
Sbjct: 294 KEARPDLCVSSDFIIGFPGETEDDFNDTLQLIEEVGYDTSFSFVYSPRPGTPAADLPDDM 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLN 441
            +  K  RL  LQ ++ +  +S +   VG +  +L++ +  K+ G+L GR+    + V+N
Sbjct: 354 PDEEKKRRLALLQHRIIQNALSISRRMVGTVQTILVDGYSKKDPGQLQGRTE--NNRVVN 411

Query: 442 SKNHN---IGDIIKVRITDVKISTLYG 465
            ++ +   IG  +K+ I +   ++L G
Sbjct: 412 FRHDDDGLIGKFVKIGIEEALPNSLRG 438


>gi|332530355|ref|ZP_08406300.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Hylemonella
           gracilis ATCC 19624]
 gi|332040166|gb|EGI76547.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Hylemonella
           gracilis ATCC 19624]
          Length = 463

 Score =  365 bits (937), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 195/459 (42%), Positives = 283/459 (61%), Gaps = 34/459 (7%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ F+K++GCQMN YDS +M D+   +QGYE+ + ++ ADLI+ NTC +REKA EKV+S 
Sbjct: 18  KKVFIKTFGCQMNEYDSDKMADVLGAAQGYEKTDDVEQADLILFNTCSVREKAQEKVFSD 77

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR+++LK   +K G      V GCVA  EGE I+ R+P V+VV GPQT +RLPELL   
Sbjct: 78  LGRVQHLKAKGVKIG------VGGCVASQEGEAIIARAPYVDVVFGPQTLHRLPELLNAR 131

Query: 144 RFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
              +R  VD  +   +KF+ L        R  G +AF++I EGC K+C++CVVPYTRG E
Sbjct: 132 EATRRPQVDISFPEIEKFDHLPPA-----RTEGASAFVSIMEGCSKYCSYCVVPYTRGEE 186

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           + R L  V+ E   L   GV EITLLGQNVNAW   GLD     F+ L+  +SE+ G+ R
Sbjct: 187 VHRPLDDVLTEVAGLAAQGVKEITLLGQNVNAWVKDGLD-----FAGLIELVSEMPGIER 241

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +RYTTSHP++ +  LI+A+  +  L+ +LHLPVQ GSDRIL +M R +TA EY+  + ++
Sbjct: 242 IRYTTSHPKEFTPRLIEAYARIPKLVSHLHLPVQHGSDRILMAMKRGYTALEYKSTVRKL 301

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+ RPD+A+++D IVGFPGET+DD   T+ L++ + +  +FSF YSPR GTP +N+ +  
Sbjct: 302 RAARPDLALATDLIVGFPGETEDDHAKTLKLIEDMEFDNSFSFIYSPRPGTPAANLQDDT 361

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRS--------- 432
             +VK  RL  +Q  +       +   VG    +L+E    K   +L G++         
Sbjct: 362 PHDVKLRRLQEVQALIEGNMRRLSQKLVGTTQRILVEGPSRKNPNELTGKTVCNRAVNFA 421

Query: 433 --PWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
             P +Q+    + +  IG ++ V IT     +L GE++ 
Sbjct: 422 MGPAMQA----APSRLIGQMVDVNITLAYPHSLRGEVLT 456


>gi|77359992|ref|YP_339567.1| involved in methylthiolation of isopentenylated A37 derivatives in
           tRNA, Fe-S protein [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76874903|emb|CAI86124.1| involved in methylthiolation of isopentenylated A37 derivatives in
           tRNA, Fe-S protein [Pseudoalteromonas haloplanktis
           TAC125]
          Length = 469

 Score =  365 bits (937), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 192/437 (43%), Positives = 279/437 (63%), Gaps = 13/437 (2%)

Query: 36  MNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSR 94
           MN YDS +M ++   + GY+  +   DAD+I+LNTC IREKA EKV+  LGR + LK+ +
Sbjct: 1   MNEYDSQKMAELLDATNGYQLTDDATDADVILLNTCSIREKAQEKVFHQLGRWKLLKDDK 60

Query: 95  IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR--FGKRVVDT 152
                DL++ V GCVA  EG+ I +R+P V+V+ GPQT +RLPE++++ +   G  VVD 
Sbjct: 61  ----PDLIIGVGGCVASQEGDSIRQRAPFVDVIFGPQTLHRLPEMIKQVQGDKGSSVVDI 116

Query: 153 DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVD 212
            +   +KF+RL        +  G +AF++I EGC K+CTFCVVPYTRG E+SR +  V+ 
Sbjct: 117 SFPEIEKFDRLP-----EPKADGPSAFVSIMEGCSKYCTFCVVPYTRGEEVSRPVDDVLL 171

Query: 213 EARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
           E  +L +  V E+ LLGQNVNA+RG   DGE C FSDL+  ++ I G+ R+RYTTSHP +
Sbjct: 172 EIAQLAEQSVREVNLLGQNVNAYRGDTHDGEICYFSDLIRLIAAIDGIDRIRYTTSHPVE 231

Query: 273 MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAIS 332
            +  ++  + D+  L+ +LHLPVQSGSDRIL  M R HTA EY+  I ++R +RP++++S
Sbjct: 232 FTQDIVDVYADVPELVDHLHLPVQSGSDRILNLMKRGHTAIEYKSTIRKLRKIRPNLSMS 291

Query: 333 SDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLL 392
           SDFI+GFPGET DDF ATM L+  +G+  +FSF YS R GTP +++ + V E  K ERL 
Sbjct: 292 SDFIIGFPGETQDDFEATMKLISDVGFDMSFSFIYSARPGTPAADLPDDVTEQEKKERLY 351

Query: 393 CLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLVGRSPWLQSVVLNSKNHNIGDII 451
            LQ ++ +     +         +L+E   K+   +L GR+   + V     +  IG  +
Sbjct: 352 LLQNRITQMAQQISRQMFDTEQRILVEGPSKKNPMELRGRTENNRVVNFVGPHTVIGQFV 411

Query: 452 KVRITDVKISTLYGELV 468
            VRIT+   ++L G+L+
Sbjct: 412 DVRITEALPNSLRGDLI 428


>gi|323499966|ref|ZP_08104924.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Vibrio
           sinaloensis DSM 21326]
 gi|323314983|gb|EGA68036.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Vibrio
           sinaloensis DSM 21326]
          Length = 474

 Score =  365 bits (936), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 198/447 (44%), Positives = 286/447 (63%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS +M D+   + GYE     ++AD+++LNTC IREKA EKV+  
Sbjct: 3   KKLLIKTWGCQMNEYDSSKMADLLNAANGYELTEDPEEADVLLLNTCSIREKAQEKVFHQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK+ +      +++ V GCVA  EG+ I  R+P V+V+ GPQT +RLPE+++++
Sbjct: 63  LGRWKTLKDKK----DGVVIGVGGCVATQEGDHIRERAPFVDVIFGPQTLHRLPEMIKQS 118

Query: 144 RFG-KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           +     ++D  +   +KF+RL        R  G TAF++I EGC K+CT+CVVPYTRG E
Sbjct: 119 QNDDAPIMDISFPEIEKFDRLP-----EPRAEGATAFVSIMEGCSKYCTYCVVPYTRGEE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR +  V+ E  +L D GV E+ LLGQNVNA+RG   +G+ C+F++LL  ++ I G+ R
Sbjct: 174 VSRPMDDVLFEIAQLADQGVREVNLLGQNVNAYRGPTHEGDICSFAELLRLVASIDGIDR 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP + +D +I  + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II ++
Sbjct: 234 IRFTTSHPLEFTDDIIAVYEDTPELVSFLHLPVQSGSDRILTMMKRPHTAIEYKSIIRKL 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R  RPDI ISSDFIVGFPGET  D + TM L+  + +  +FSF +SPR GTP ++    V
Sbjct: 294 RKARPDIQISSDFIVGFPGETAKDHQDTMKLIKDVDFDMSFSFIFSPRPGTPAADYPCDV 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441
            E  K ERL  LQ+ +  Q + ++   +G    VL+E   K+   +L  R+   + V   
Sbjct: 354 PEQEKKERLYELQQTVNAQAMRYSRLMLGTEQRVLVEGPSKKNLMELRARTENNRVVNFE 413

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                IG  + V+ITDV  ++L GELV
Sbjct: 414 GSADLIGQFVDVKITDVFANSLRGELV 440


>gi|124265725|ref|YP_001019729.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Methylibium
           petroleiphilum PM1]
 gi|229890616|sp|A2SD55|MIAB_METPP RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|124258500|gb|ABM93494.1| bifunctional enzyme involved in thiolation and methylation of tRNA
           [Methylibium petroleiphilum PM1]
          Length = 457

 Score =  365 bits (936), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 194/453 (42%), Positives = 280/453 (61%), Gaps = 19/453 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ F+K++GCQMN YDS +M D+   ++GYE    ++ ADLI+ NTC +REKA EKV+S 
Sbjct: 8   KKVFIKTFGCQMNEYDSDKMADVLRAAEGYEPTTDVEQADLILFNTCSVREKAQEKVFSD 67

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR+++LK   +K G      V GCVA  EG  ++ R+P V+VV GPQT +RLPE+L R 
Sbjct: 68  LGRVKHLKARGVKIG------VGGCVASQEGAALIERAPYVDVVFGPQTLHRLPEMLARR 121

Query: 144 RFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
              +R  VD  +   +KF+ L        R  G TAF++I EGC K+C++CVVPYTRG E
Sbjct: 122 DAQQRPQVDISFPEIEKFDHLPPA-----RVDGATAFVSIMEGCSKYCSYCVVPYTRGEE 176

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-GLDGEKCTFSDLLYSLSEIKGLV 261
           +SR    V+ E   L D GV E+TLLGQNVN +RG+ G   E   F+ LL  ++EI G+ 
Sbjct: 177 VSRPFDDVLTEVASLADQGVKEVTLLGQNVNGYRGRMGDTAEIADFALLLEYVAEIPGIA 236

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+RYTTSHP + S  LI  +  +  L+ +LHLPVQ GSDRIL +M R +T+ EY+  I +
Sbjct: 237 RIRYTTSHPNEFSQRLIDVYARVPQLVNHLHLPVQHGSDRILSAMKRGYTSLEYKSSIRK 296

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R++RPDI++S+DFIVGFPGETDDD   TM L++ +G+  +FSF YS R GTP + + + 
Sbjct: 297 LRAIRPDISLSTDFIVGFPGETDDDHARTMKLIEDVGFDHSFSFIYSARPGTPAAALHDD 356

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-----GKLVGRSPWLQ 436
               +K  RL  +Q+ +         + VG +  +L+E   +        +L+GR+   +
Sbjct: 357 APRELKLARLQQVQEAIEANGRRIGQSRVGTVQRILVEGPSRRPELNAGHELMGRTECNR 416

Query: 437 SVVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
            V         G +I V IT+    +L GE+++
Sbjct: 417 IVNFAGPARLTGQLIDVTITEAYPHSLRGEVLL 449


>gi|89074960|ref|ZP_01161405.1| putative 2-methylthioadenine synthetase [Photobacterium sp. SKA34]
 gi|89049199|gb|EAR54763.1| putative 2-methylthioadenine synthetase [Photobacterium sp. SKA34]
          Length = 475

 Score =  365 bits (936), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 198/447 (44%), Positives = 285/447 (63%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS +M D+   + G+E     ++AD+++LNTC IREKA EKV+  
Sbjct: 3   KKLLIKTWGCQMNEYDSSKMADLLNAANGFELTEIPEEADVVLLNTCSIREKAQEKVFHQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK+ +      L++ V GCVA  EG+ I +R+P V+V+ GPQT +RLPE+++R+
Sbjct: 63  LGRWKKLKDKKPD----LVIGVGGCVATQEGDSIRKRAPYVDVIFGPQTLHRLPEMIKRS 118

Query: 144 RFG-KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           +   K V+D  +   +KF+ L        R  G TAF++I EGC K+CT+CVVPYTRG E
Sbjct: 119 QSNEKTVMDISFPEVEKFDNLP-----EPRAEGATAFVSIMEGCSKYCTYCVVPYTRGEE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR L  V+ E  +L + GV E+ LLGQNVNA+RG   DGE  +F++LL  ++ I G+ R
Sbjct: 174 VSRPLDDVLFEIAQLAEQGVREVNLLGQNVNAYRGPMHDGEVASFAELLRLVAAIDGIDR 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +RYTTSHP + +D +I  + D   L+ YLHLPVQSGSDRIL  M R HT  EY+  I ++
Sbjct: 234 IRYTTSHPIEFTDDIIDVYTDTPELVNYLHLPVQSGSDRILTMMKRPHTVLEYKSKIRKL 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R VRPDI +SSDFIV FPGE+D DF  TM L+  I +  ++SF +SPR GTP ++    +
Sbjct: 294 RKVRPDITMSSDFIVAFPGESDQDFEDTMKLIRDIDFDISYSFIFSPRPGTPAADYPCDL 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441
            E+VK ERL  LQ+++  Q +      +     +L+E   ++   +L GR+   + V   
Sbjct: 354 SEDVKKERLYALQQQINSQAMRHARQMLDTEQRILVEGPSRKNVMELRGRTENNRIVNFE 413

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                IG  + V+I DV  ++L GELV
Sbjct: 414 GSADLIGQFVDVKIVDVFTNSLRGELV 440


>gi|90022940|ref|YP_528767.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Saccharophagus
           degradans 2-40]
 gi|122995883|sp|Q21FH4|MIAB_SACD2 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|89952540|gb|ABD82555.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Saccharophagus degradans
           2-40]
          Length = 454

 Score =  365 bits (936), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 183/411 (44%), Positives = 274/411 (66%), Gaps = 13/411 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ +++++GCQMN YDS RM D+   S      ++ ++AD++++NTC IREKA EK++  
Sbjct: 11  KKLYIQTHGCQMNEYDSSRMRDLLGASHDMVPTDNPEEADVLLVNTCSIREKAQEKLFHQ 70

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR ++LK ++     DL++ V GCVA  EG+ I +R+P V+++ GPQT +RLPE++E  
Sbjct: 71  LGRWKHLKEAK----PDLVIGVGGCVASQEGDAISKRAPFVDLIFGPQTLHRLPEMIETP 126

Query: 144 R-FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           R  G  VVD  +   +KF+ L   +       G TAF+++ EGC K+CTFCVVPYTRG E
Sbjct: 127 RENGAVVVDISFPEIEKFDNLPEPEAD-----GATAFVSVMEGCSKYCTFCVVPYTRGEE 181

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR    V+ E   L   GV E+ LLGQNVNA+R     GE    ++L+ ++++I G+ R
Sbjct: 182 VSRPAVDVLREVTHLASQGVREVNLLGQNVNAYRDDS-SGEVIDLAELIAAVADIDGIDR 240

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP + ++ LI+A+ ++  L+ +LHLPVQSGSDRIL +M R HT  EY+  + +I
Sbjct: 241 IRFTTSHPMEFTESLIQAYAEIPELVSHLHLPVQSGSDRILSAMKRGHTCLEYKSKLRKI 300

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R++RPDI+ SSDFI+GFPGET+ DF ATM L++ IG+  +FSF YSPR GTP +++ +  
Sbjct: 301 RALRPDISFSSDFIIGFPGETEADFAATMKLIEDIGFDNSFSFIYSPRPGTPAADLPDDT 360

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRS 432
            E VK +RL  LQ ++ +Q    +   VG    VL+  +  K+ G+L GR+
Sbjct: 361 PEQVKKDRLKILQTRIIQQAQEISRRMVGNTERVLVTGYSKKDPGQLSGRT 411


>gi|238028582|ref|YP_002912813.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Burkholderia
           glumae BGR1]
 gi|237877776|gb|ACR30109.1| TRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia glumae BGR1]
          Length = 457

 Score =  364 bits (934), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 196/454 (43%), Positives = 290/454 (63%), Gaps = 18/454 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ +VK++GCQMN YDS +M D+   ++G E+ +  +DAD+I+ NTC +REKA EKV+S 
Sbjct: 3   KKVYVKTFGCQMNEYDSDKMVDVLNAAEGLEKTDRPEDADVILFNTCSVREKAQEKVFSD 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR+R LK +  K G  L++ V GCVA  EG  I+ R+P V++V GPQT +RLP++++  
Sbjct: 63  LGRVRELKEA--KPG--LIIGVGGCVASQEGAAIVARAPYVDLVFGPQTLHRLPKMIDAR 118

Query: 144 RF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           R  G+  VD  +   +KF+ L        R  G +AF++I EGC K+C++CVVPYTRG E
Sbjct: 119 RASGRSQVDITFPEIEKFDHLPPA-----RVEGPSAFVSIMEGCSKYCSYCVVPYTRGDE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG--EKCTFSDLLYSLSEIKGL 260
           +SR L  V+ E   L D GV E+TLLGQNVNA+RG    G  E   F+ L+  ++++ G+
Sbjct: 174 VSRPLDDVLTEIAGLADQGVREVTLLGQNVNAYRGALTAGSTEIADFATLIEYVADLPGI 233

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+RYTTSHP++ +  L++ +  +  L+ +LHLPVQ GSDR+L +M R +T  EY+ +I 
Sbjct: 234 ERIRYTTSHPKEFTQRLLEVYARVPKLVNHLHLPVQHGSDRVLMAMKRGYTVLEYKSLIR 293

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R++RP +++S+D IVGFPGET+ DF  TM LV ++ Y  +FSF YSPR GTP +N+ +
Sbjct: 294 KLRAIRPGLSLSTDIIVGFPGETEADFDKTMALVHEMRYDTSFSFIYSPRPGTPAANLHD 353

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSV- 438
                VK +RL  LQ  + E     + + VG +  +L+E    K+  +L GR+   + V 
Sbjct: 354 DTPREVKLKRLQHLQATIEENVAHISASMVGGVERILVEGPSRKDPNELAGRTENNRVVN 413

Query: 439 ---VLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
               L S    IG +I VRI      +L GELV+
Sbjct: 414 FPAPLASHARLIGQMIDVRINHAYPHSLRGELVL 447


>gi|326796263|ref|YP_004314083.1| (dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Marinomonas mediterranea MMB-1]
 gi|326547027|gb|ADZ92247.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Marinomonas mediterranea MMB-1]
          Length = 450

 Score =  363 bits (933), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 189/447 (42%), Positives = 285/447 (63%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ F++++GCQMN YDS RM D+   S   E   + ++AD+++LNTC IREKA +KVY  
Sbjct: 3   KKLFIQTHGCQMNEYDSSRMADLLGDSHEMEITENAEEADVLLLNTCSIREKAQDKVYHQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK     +  DL++ V GCVA  EG+ I +R+  V+++ GPQT ++LPE+++ A
Sbjct: 63  LGRWKKLK----AKNPDLVIGVGGCVASQEGDNIRKRAKHVDMIFGPQTLHKLPEMVDAA 118

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
                + D  +   +KF+ L        R  G  AF+++ EGC K+CTFCVVPYTRG E+
Sbjct: 119 ATHIPITDVTFPEIEKFDHLPAP-----RVEGAEAFVSVMEGCSKYCTFCVVPYTRGEEV 173

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR    V+ E  +L + GV EI LLGQNVNA+RG+  DG++   +D++++++ I+G+ R+
Sbjct: 174 SRPYEDVLKEVAQLSEQGVREIHLLGQNVNAYRGETQDGDEADLADIIHAIARIEGVERI 233

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+TTSHP + +D LI+A      L+ +LHLPVQSG++ +L +M R H    Y   I+RI+
Sbjct: 234 RFTTSHPVEFTDSLIEAFRTEPKLVSHLHLPVQSGANNVLSAMKRGHDRQYYIDKINRIK 293

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
             RP I++SSDFI+GFPGETDDDF  TM+L+ +IG+  +FSF YS R GTP S++ +   
Sbjct: 294 DARPGISLSSDFIIGFPGETDDDFIDTMNLIQEIGFDHSFSFVYSQRPGTPASDLEDDTP 353

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLNS 442
           E +K ERL  LQ+++ +Q    +   VG I  +L+  +  ++ G+L GR+   + V   +
Sbjct: 354 EELKKERLAILQRRISQQAYDISLNMVGNIERILVSGYSPRDPGQLQGRTENNRIVNFRA 413

Query: 443 KNHN-IGDIIKVRITDVKISTLYGELV 468
            +   IG    V ITD   ++L GEL 
Sbjct: 414 DDPKLIGKFADVVITDAYPNSLLGELA 440


>gi|262277765|ref|ZP_06055558.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [alpha proteobacterium
           HIMB114]
 gi|262224868|gb|EEY75327.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [alpha proteobacterium
           HIMB114]
          Length = 435

 Score =  363 bits (933), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 186/445 (41%), Positives = 286/445 (64%), Gaps = 14/445 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++F++K++GCQMN YDS ++ D+  S  Y++++ +D+AD  + NTCHIREKA +KVYS +
Sbjct: 4   KKFYIKTFGCQMNEYDSNKISDLMNSIAYQKIDKIDEADCFIFNTCHIREKATQKVYSDI 63

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           G+I+       K+    + V+AGCVAQAE   +  +S  V++VVGPQ Y++LP L++  +
Sbjct: 64  GKIK----KIYKDKKKPIFVLAGCVAQAESSMVFEKSDYVDIVVGPQAYHKLPYLIKSFK 119

Query: 145 FGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             + R V+T+  V+ KF+   ++    N K  +++F+TIQEGCDKFC FCVVPYTRG E 
Sbjct: 120 SNRQRSVETELDVDGKFD---VLKNLKNTKSKISSFVTIQEGCDKFCKFCVVPYTRGPEF 176

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR  ++++DE   L DNG  EI LLGQNV+A++   +     + + L+  +++I  + R+
Sbjct: 177 SRDHNKILDEILSLTDNGTKEIVLLGQNVSAYKNNDI-----SLARLIKKIAKINNVKRI 231

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+TTSHP D    LI   G+   LMP LHLPVQSGSD+ILK MNR HT  +Y  +I++ R
Sbjct: 232 RFTTSHPNDFDQELISLFGEEPKLMPQLHLPVQSGSDKILKLMNRNHTRSDYLNLIEKFR 291

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
             + DI  SSDFIVGFPGET++D   T++LV ++ ++ ++SF YS R GTP +N L ++D
Sbjct: 292 KEKSDIQFSSDFIVGFPGETNEDHLDTINLVKEVKFSLSYSFIYSQRPGTPATN-LSELD 350

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
            N+  +RL  LQ  L +QQ+ FN + +     VL E   + + +  GR+ ++  V + + 
Sbjct: 351 NNISQKRLEELQGLLFKQQIEFNHSMINHENSVLFENKTQNEEQFFGRNQYMTPVFIKNT 410

Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468
               G+I K+ I +   + L+G + 
Sbjct: 411 AIKAGEIKKIFIENANRNNLFGRIA 435


>gi|307610039|emb|CBW99573.1| hypothetical protein LPW_13431 [Legionella pneumophila 130b]
          Length = 434

 Score =  363 bits (932), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 195/436 (44%), Positives = 277/436 (63%), Gaps = 12/436 (2%)

Query: 36  MNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSR 94
           MN YDS +M ++ + S G  + + ++DAD+I+LNTC IREKA EKV+S LG+ R  K   
Sbjct: 1   MNEYDSSKMAEVLYASHGLVKTDQVEDADVILLNTCSIREKAQEKVFSQLGQWREYK--- 57

Query: 95  IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-ERARFGKRVVDTD 153
             +   +L+ V GCVA  EG +I++R+P V++V GPQT +RLP LL ER    K VVD  
Sbjct: 58  -AKNPHVLIGVGGCVASQEGSDIIKRAPFVDIVFGPQTLHRLPALLNERLEKNKSVVDIS 116

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           +   +KF+ L        R  G TAF++I EGC K+C+FCVVPYTRG EISR    V+ E
Sbjct: 117 FPEIEKFDHLPA-----PRAEGPTAFVSIMEGCSKYCSFCVVPYTRGEEISRPFDDVLAE 171

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
             +L   GV EI LLGQNVN +RG   +G+    + L++ ++ I G+ R+R+TTSHP   
Sbjct: 172 CYQLASQGVREINLLGQNVNDYRGIMDNGDIADLALLIHYIAAIDGIGRIRFTTSHPLAF 231

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
           S+ LI A+ ++  L  +LHLPVQSGSDRIL  M R +TA E++  I ++R +RPDI +S+
Sbjct: 232 SENLINAYAEVPELANHLHLPVQSGSDRILSLMKRGYTALEFKSKIRKLRKIRPDIRLST 291

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLC 393
           D IVGFPGETD DF+ TMDLV +IG+  +FSF YSPR GTP +N+ +     VK +RL  
Sbjct: 292 DIIVGFPGETDKDFQDTMDLVHEIGFDTSFSFIYSPRPGTPAANLPDDTPMEVKKQRLQI 351

Query: 394 LQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLVGRSPWLQSVVLNSKNHNIGDIIK 452
           LQ +L      ++++ +G   ++L+    K+   +L GR+   + V  +   H IG  I 
Sbjct: 352 LQNRLLMNAARYSESMIGSKQKILVTGFSKKSSQQLSGRTECNRVVNFDGPPHLIGQFID 411

Query: 453 VRITDVKISTLYGELV 468
           V+I+D   ++L G L+
Sbjct: 412 VQISDALPNSLRGRLL 427


>gi|146329852|ref|YP_001210121.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Dichelobacter nodosus
           VCS1703A]
 gi|229890515|sp|A5EXA7|MIAB_DICNV RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|146233322|gb|ABQ14300.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Dichelobacter nodosus
           VCS1703A]
          Length = 456

 Score =  363 bits (932), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 197/447 (44%), Positives = 285/447 (63%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           +  ++++YGCQMN YDS +M  +   S G   V + ++AD+++LNTC +REKA EKV+S 
Sbjct: 6   KHVYIETYGCQMNEYDSSKMLAVLKNSHGITPVATPEEADVLLLNTCSVREKAQEKVFSQ 65

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR ++LK  +      L++ V GCVA  EGE I RR+P V+VV GPQT +RLP L+E A
Sbjct: 66  LGRWKSLKERK----PHLIIGVGGCVASQEGEMIRRRAPEVDVVFGPQTLHRLPNLIEEA 121

Query: 144 RFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           +  +  VVD  +   +KF+ L        R  G TA++++ EGC K+CT+CVVPYTRG E
Sbjct: 122 QRSRGGVVDVSFPEIEKFDHLP-----EPRAEGPTAYVSVMEGCSKYCTYCVVPYTRGAE 176

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           ISR    V+ E   L   GV EI LLGQNVNA+RG   DG     + L+  ++ I  + R
Sbjct: 177 ISRPFDDVLAECATLAAQGVREINLLGQNVNAYRGAMHDGTIADLALLIEYVAAIPNIGR 236

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP + SD LI+ +  +  L+ +LHLPVQSGS+RIL  M R +   EY++ + +I
Sbjct: 237 IRFTTSHPSEFSDALIETYRRVPKLVSHLHLPVQSGSNRILALMKRDYKVAEYQEKLAKI 296

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R++RPDI+ SSDFIVGFPGE ++DF+ATMDL++ + +  ++SF YS R GTP S M ++V
Sbjct: 297 RAIRPDISFSSDFIVGFPGEEEEDFQATMDLIEAVFFDTSYSFIYSQRPGTPASTMPDRV 356

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GRSPWLQSVVLN 441
              VK ERL  LQ ++ E   S ++A VG    VL+++  ++  + V GR+   + V  +
Sbjct: 357 PLTVKKERLARLQARILEMAASISEAMVGTEQWVLVDRLSRKSEREVSGRTENNRVVNFS 416

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
           +    IG   KV+IT    ++L G L+
Sbjct: 417 APASLIGRFAKVQITAAYKNSLRGRLI 443


>gi|212636644|ref|YP_002313169.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Shewanella
           piezotolerans WP3]
 gi|212558128|gb|ACJ30582.1| tRNA-i(6)A37 modification enzyme MiaB [Shewanella piezotolerans
           WP3]
          Length = 462

 Score =  363 bits (932), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 195/436 (44%), Positives = 278/436 (63%), Gaps = 12/436 (2%)

Query: 36  MNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSR 94
           MN YDS +M D+    +GYE  +  ++AD+++LNTC IREKA EKV+  LGR + LK+  
Sbjct: 1   MNEYDSSKMADLLDEYEGYELTDEAEEADVLLLNTCSIREKAQEKVFHQLGRWKTLKD-- 58

Query: 95  IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR-VVDTD 153
            K+ G L++ V GCVA  EG+ I  R+  V+++ GPQT +RLPE+L++ + GK+ V+D  
Sbjct: 59  -KKPG-LIIGVGGCVASQEGKAIKERAQCVDLIFGPQTLHRLPEMLDQIKDGKKAVIDVS 116

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           +   +KF+RL        R  G +A+++I EGC K+C+FCVVPYTRG E+SR L  ++ E
Sbjct: 117 FPEIEKFDRLP-----EPRADGPSAYVSIMEGCSKYCSFCVVPYTRGEEVSRPLDDIILE 171

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
             +L D GV E+ LLGQNVNA+RG   D E CTF++LL  ++ I G+ RLR+TTSHP + 
Sbjct: 172 IAQLADQGVREVNLLGQNVNAYRGATHDDEICTFAELLRYVAAIDGIDRLRFTTSHPIEF 231

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
           +  +I  + D   L+ +LHLPVQSGSD IL  M R H A EY+ II R+R  RPDI ISS
Sbjct: 232 TQDIIDVYEDTPELVSFLHLPVQSGSDLILTQMKRGHMAIEYKSIIRRLRKARPDIQISS 291

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLC 393
           DFI+GFPGE+  DF  TM L++ + +  +FSF YS R GTP +++ + V    K ERL  
Sbjct: 292 DFIIGFPGESKQDFADTMKLIEDVQFDHSFSFIYSARPGTPAADLPDDVTLEEKKERLAI 351

Query: 394 LQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLNSKNHNIGDIIK 452
           LQ ++ +Q + ++   VG +  +L+E    K   +L GR+   + V    K  +IG  + 
Sbjct: 352 LQDRITQQAMRYSRHMVGTVQRILVEGPSVKNPMELRGRTENSRVVNFEGKPEHIGGFVD 411

Query: 453 VRITDVKISTLYGELV 468
           V I DV  ++L G  V
Sbjct: 412 VEIVDVYTNSLRGVFV 427


>gi|50086159|ref|YP_047669.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Acinetobacter
           sp. ADP1]
 gi|81392304|sp|Q6F7W8|MIAB_ACIAD RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|49532135|emb|CAG69847.1| putative tRNA-i(6)A37 modification enzyme (MiaB) [Acinetobacter sp.
           ADP1]
          Length = 483

 Score =  363 bits (931), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 196/455 (43%), Positives = 286/455 (62%), Gaps = 20/455 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ ++++ GCQMN YDS RM D+   S GY       +AD++++NTC IREKA EKV+S 
Sbjct: 31  KKLYIETQGCQMNEYDSHRMADLLGDSHGYVLTTDPKEADILLMNTCSIREKAQEKVFSE 90

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL--- 140
           LGR R LK    ++  DL++ V GCVA  EG+ I +R+P V++V GPQT +RLP++L   
Sbjct: 91  LGRWRKLK----QQNPDLIIGVGGCVASQEGDNIQKRAPYVDMVFGPQTLHRLPQMLDQH 146

Query: 141 ----ERARFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
               E+ +  K ++VD  +   +KF+ L        R  G  AF++I EGC K+C+FCVV
Sbjct: 147 QDQIEKPKKDKIKLVDISFPDIEKFDFLP-----EPRVEGFKAFVSIMEGCSKYCSFCVV 201

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
           PYTRG E+SR L  V+ E   L + GV EI+LLGQNVN +RG+  +G  CTF +LL  +S
Sbjct: 202 PYTRGEEVSRPLDDVLAEIAGLAEKGVREISLLGQNVNGYRGETFEGGICTFPELLRLVS 261

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
           EI G+ RLRYTTSHP + S+ LI+ + DL  ++ +LHLPVQSGS+ +L++M R HT   Y
Sbjct: 262 EIPGIGRLRYTTSHPLEFSEELIQCYRDLPQMVSHLHLPVQSGSNAVLQAMKRNHTIDVY 321

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
            + I ++R +RPD+ +SSDFI+GFPGET+ +F  T   +  + +  ++SF YS R GTP 
Sbjct: 322 IEKIAKLRKIRPDMHLSSDFIIGFPGETEQNFEETYQFIKDLDFDHSYSFIYSKRPGTPA 381

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPW 434
           S + +   E VK ERL  +Q  +++  +   DA  G I  VLIE    K+   LVG +  
Sbjct: 382 SELEDTTSEAVKKERLAKVQHWIKQSSIRKTDAMQGTIQRVLIENVSEKDPNLLVGTADN 441

Query: 435 LQSVVLNSKNHNIGDIIKVRITDVK-ISTLYGELV 468
            + V        +G   ++ IT++K ++ +YGEL+
Sbjct: 442 TRLVTFVGDPMWVGRFAEIEITEIKTLNLVYGELL 476


>gi|119504409|ref|ZP_01626489.1| bifunctional enzyme involved in thiolation and methylation of tRNA
           [marine gamma proteobacterium HTCC2080]
 gi|119459917|gb|EAW41012.1| bifunctional enzyme involved in thiolation and methylation of tRNA
           [marine gamma proteobacterium HTCC2080]
          Length = 432

 Score =  362 bits (930), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 195/438 (44%), Positives = 280/438 (63%), Gaps = 13/438 (2%)

Query: 36  MNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSR 94
           MN YDS RM D+   S G    +  +DAD+++LNTC IREKA EKV+  LGR R LK ++
Sbjct: 1   MNEYDSARMADLLAESHGLALTDRAEDADVLLLNTCSIREKAQEKVFHQLGRWRPLKQAK 60

Query: 95  IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV-DTD 153
                +L++ V GCVA  EG EI +R+P V+++ GPQT +RLPE++E  R G  VV D  
Sbjct: 61  ----PNLIIGVGGCVASQEGAEISKRAPFVDLIFGPQTLHRLPEMIEARRDGTPVVVDVS 116

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           +   +KF+RL        R  G +AF++I EGC K+CTFCVVPYTRG E+SR +  ++ E
Sbjct: 117 FPEIEKFDRLP-----EPRVDGPSAFVSIMEGCSKYCTFCVVPYTRGEEVSRPVDDIIAE 171

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
              L   GV E+ LLGQNVNA+RG    GE   F++LL+ ++ + G+ R+RYTTSHP + 
Sbjct: 172 IASLAGGGVKEVNLLGQNVNAYRGPNHLGESVDFAELLHLVNLVSGIERIRYTTSHPVEF 231

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
           SD LI+ + D+  L+ +LHLPVQSGSDR L +M R HTA EY+  I  +R +RP+I++SS
Sbjct: 232 SDALIQCYADIPALVDHLHLPVQSGSDRTLMAMKRGHTALEYKAKIRALRRIRPNISLSS 291

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLC 393
           DFI+GFPGE + DF ATM L+D IG+  +FSF YS R GTP +++ ++ +   K +RL  
Sbjct: 292 DFIIGFPGEDEKDFSATMKLIDDIGFDHSFSFIYSARPGTPAADLADETEMATKKQRLKI 351

Query: 394 LQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSVVLNSKNHN-IGDII 451
           LQ ++ +Q  + + A VG    +L+     K+ G+L GR+   + V  +  +   IG   
Sbjct: 352 LQGRIAQQAAAISIAMVGSEQRILVTGVSKKDPGQLAGRTENNRVVNFSCDDSGLIGHFA 411

Query: 452 KVRITDVKISTLYGELVV 469
            V+I +   ++L G+L+ 
Sbjct: 412 DVKIVEALPNSLRGQLLA 429


>gi|261253662|ref|ZP_05946235.1| tRNA-i(6)A37 methylthiotransferase [Vibrio orientalis CIP 102891]
 gi|260937053|gb|EEX93042.1| tRNA-i(6)A37 methylthiotransferase [Vibrio orientalis CIP 102891]
          Length = 474

 Score =  362 bits (930), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 197/447 (44%), Positives = 286/447 (63%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS +M D+   + GYE     ++AD+++LNTC IREKA EKV+  
Sbjct: 3   KKLLIKTWGCQMNEYDSSKMADLLNAANGYELTEEPEEADVLLLNTCSIREKAQEKVFHQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK+ +      +++ V GCVA  EG+ I  R+P V+V+ GPQT +RLPE+++++
Sbjct: 63  LGRWKTLKDKK----EGVVIGVGGCVATQEGDHIRERAPFVDVIFGPQTLHRLPEMIKQS 118

Query: 144 RFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           +  +  V+D  +   +KF+RL        R  G TAF++I EGC K+CT+CVVPYTRG E
Sbjct: 119 QSNEAPVMDISFPEIEKFDRLP-----EPRAEGATAFVSIMEGCSKYCTYCVVPYTRGEE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR +  V+ E  +L D GV E+ LLGQNVNA+RG   +G+ C+F++LL  ++ I G+ R
Sbjct: 174 VSRPMDDVLFEIAQLADQGVREVNLLGQNVNAYRGPTHEGDICSFAELLRLVASIDGIDR 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP + +D +I  + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II ++
Sbjct: 234 IRFTTSHPLEFTDDIIAVYEDTPELVSFLHLPVQSGSDRILTMMKRPHTAIEYKSIIRKL 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R  RPDI ISSDFIVGFPGET  D + TM L+  + +  +FSF +SPR GTP ++    V
Sbjct: 294 RKARPDIQISSDFIVGFPGETAKDHQDTMKLIKDVDFDMSFSFIFSPRPGTPAADYPCDV 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441
            E  K ERL  LQ+ +  Q + ++   +     VL+E   K+   +L  R+   + V   
Sbjct: 354 PEQEKKERLYELQQTVNAQAMRYSRLMLDTEQRVLVEGPSKKNLMELRARTENNRVVNFE 413

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                IG  + V+ITDV  ++L G+LV
Sbjct: 414 GSADLIGQFVDVKITDVFANSLRGDLV 440


>gi|93006871|ref|YP_581308.1| tRNA-i(6)A37 modification enzyme MiaB [Psychrobacter cryohalolentis
           K5]
 gi|123386578|sp|Q1Q929|MIAB_PSYCK RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|92394549|gb|ABE75824.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Psychrobacter
           cryohalolentis K5]
          Length = 497

 Score =  362 bits (930), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 196/458 (42%), Positives = 287/458 (62%), Gaps = 24/458 (5%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ FV + GCQMNVYDS +M D+   S G E  +++D+AD++++NTC IREKA EKV+S 
Sbjct: 44  KKVFVTTQGCQMNVYDSGKMLDVLGDSHGMEVTHNIDEADVLLMNTCSIREKAQEKVFSE 103

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR R LK  R     DL++ V GCVA  EG+ I +R+P V++V GPQT +RLPEL +++
Sbjct: 104 LGRWRKLKEKR----PDLVIGVGGCVASQEGDNIQKRAPYVDMVFGPQTLHRLPELYDQS 159

Query: 144 RFGKRV--------VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
              + +        VD  +   +KF+ L        R  G  AF++I EGC K+C+FCVV
Sbjct: 160 HQQREIAPKNRIGTVDVSFPSIEKFDFLP-----EPRVEGFKAFVSIMEGCSKYCSFCVV 214

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
           PYTRG E+SR L  V+ E   L   GV EI LLGQNVN +RG+  DG  C F++LL+ +S
Sbjct: 215 PYTRGEELSRPLDDVLAEIDSLAAQGVREINLLGQNVNGYRGEKDDGSICRFAELLHYVS 274

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
            + G+ R+RYTTSHP + +D +I A+  L  L+ +LHLPVQSGS+ IL +M R HT   Y
Sbjct: 275 HVDGVERIRYTTSHPLEFTDDIIDAYAQLPELVSHLHLPVQSGSNAILAAMKRNHTIDVY 334

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
              I++++++RPDI +SSDFI+GFPGETD DF+ T++L  ++ +  ++SF YS R GTP 
Sbjct: 335 INQINKLKAIRPDIHLSSDFIIGFPGETDQDFQDTLNLAKELNFDHSYSFIYSKRPGTPA 394

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPW 434
           + + + V    K ERL   QK + +  ++     VG    VL+E+   +    L+G +  
Sbjct: 395 AELPDDVSFKTKKERLAEFQKVIIDSTLAKTHEMVGTTTRVLVEQVANRHPDCLIGTADN 454

Query: 435 LQSVV----LNSKNHNIGDIIKVRITD-VKISTLYGEL 467
            ++V+    ++  +  +G I+ VRITD V    + GE+
Sbjct: 455 TRTVMFPYDVDKMDEMLGKIVSVRITDFVSPHMVKGEI 492


>gi|307822344|ref|ZP_07652576.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Methylobacter
           tundripaludum SV96]
 gi|307736910|gb|EFO07755.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Methylobacter
           tundripaludum SV96]
          Length = 438

 Score =  362 bits (929), Expect = 7e-98,   Method: Compositional matrix adjust.
 Identities = 190/436 (43%), Positives = 281/436 (64%), Gaps = 12/436 (2%)

Query: 36  MNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSR 94
           MN YDS +M D+   S G+E ++    AD+++LNTC IREKA EKV+S LG+ R +K+ R
Sbjct: 1   MNEYDSDKMRDVLNASHGFELIDDPKQADVLLLNTCSIREKAQEKVFSALGKWRKIKDKR 60

Query: 95  IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR-VVDTD 153
                D+++ V GCVA  EG  I +R+P V++V GPQT +RLP+LL++AR  ++ VVD  
Sbjct: 61  ----PDVIIGVGGCVASQEGAAIQKRAPFVDIVFGPQTLHRLPQLLDQARSQQKPVVDVS 116

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           +   +KF+ L        R  G  AF+++ EGC K+CTFCVVPYTRG EISR L  V+ E
Sbjct: 117 FPEIEKFDALP-----EPRAEGPKAFVSVMEGCSKYCTFCVVPYTRGEEISRPLDDVIAE 171

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
              L   GV EI LLGQNVNA+RG+  DG+   F+ LL+ ++ ++G+ R+R+TTSHP + 
Sbjct: 172 ITSLAKQGVREINLLGQNVNAYRGEMDDGDIADFALLLHYVAAVEGIDRIRFTTSHPMEF 231

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
           +D LI+A  ++  L+ +LHLPVQSGSD ILK M R H   +Y +II ++R+VRP+I +SS
Sbjct: 232 TDELIEAFAEIPQLVDHLHLPVQSGSDHILKMMKRGHARADYIEIIRKLRAVRPNIYLSS 291

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLC 393
           DFI+GFPGETD +F  TM  +++IG+  +FSF YS R GTP +++ + V  +VK +RL  
Sbjct: 292 DFIIGFPGETDAEFEETMSFIEEIGFDLSFSFVYSQRPGTPAADLPDDVPADVKKQRLER 351

Query: 394 LQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLVGRSPWLQSVVLNSKNHNIGDIIK 452
            Q ++ E   + +++ +G +  VL+E   K+   ++ GR+   + V         G  + 
Sbjct: 352 FQNRINEMTAAISESMIGTVQTVLVEGQSKKNPLQMQGRTENNRVVNFIGHPRLAGQFVD 411

Query: 453 VRITDVKISTLYGELV 468
           V I +   ++L G +V
Sbjct: 412 VLIAEALPNSLRGRMV 427


>gi|262377253|ref|ZP_06070477.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Acinetobacter lwoffii
           SH145]
 gi|262307706|gb|EEY88845.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Acinetobacter lwoffii
           SH145]
          Length = 485

 Score =  362 bits (928), Expect = 9e-98,   Method: Compositional matrix adjust.
 Identities = 192/455 (42%), Positives = 291/455 (63%), Gaps = 20/455 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ ++++ GCQMN YDS RM D+   S GY       +AD++++NTC IREKA EKV+S 
Sbjct: 33  KKLYIETQGCQMNEYDSHRMADLLGDSHGYVLTTDPKEADILLMNTCSIREKAQEKVFSE 92

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER- 142
           LGR R LK+    +  DL++ V GCVA  EG+ I +R+  V+++ GPQT +RLP++L++ 
Sbjct: 93  LGRWRKLKD----KNPDLIIGVGGCVASQEGDNIQKRANYVDMIFGPQTLHRLPQMLDQH 148

Query: 143 -------ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
                   +   ++VD  +   +KF+ L        R  G  AF++I EGC K+C+FCVV
Sbjct: 149 FEQIEKPKKEKIKLVDISFPDIEKFDFLP-----EPRVEGYKAFVSIMEGCSKYCSFCVV 203

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
           PYTRG E+SR L  V+ E   L + GV EI+LLGQNVN +RG+  +G  CTF+DLL  ++
Sbjct: 204 PYTRGEEVSRPLDDVLAEIAGLAEKGVREISLLGQNVNGYRGETFEGNICTFADLLRLVA 263

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
           +I G+ R+RYTTSHP + +D LI+ + DL  ++ +LHLPVQSGS+ +L++M R HT   Y
Sbjct: 264 DIPGIGRIRYTTSHPLEFNDDLIQCYRDLPQMVSHLHLPVQSGSNDVLQAMKRNHTIDVY 323

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
            + I ++R+VRPD+ +SSDFI+GFPGETD++F  T   +  + +  ++SF YS R GTP 
Sbjct: 324 IEKIKKLRAVRPDMHLSSDFIIGFPGETDENFEETYQFIQDLDFDHSYSFIYSKRPGTPA 383

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPW 434
           + + + + E+VK ERL  +Q+ ++   +   DA +G I  VLIEK   K+   LVG +  
Sbjct: 384 AELEDTISEDVKKERLAKVQQWIKRSSIDKTDAMLGTIQRVLIEKVSDKDPNILVGTADN 443

Query: 435 LQSVVLNSKNHNIGDIIKVRITDVK-ISTLYGELV 468
            + V        +G   ++ IT++K ++ +YGEL+
Sbjct: 444 TRYVNFIGDPAWVGRFAEIEITEIKTLNLVYGELL 478


>gi|257455516|ref|ZP_05620748.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Enhydrobacter aerosaccus
           SK60]
 gi|257447085|gb|EEV22096.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Enhydrobacter aerosaccus
           SK60]
          Length = 488

 Score =  361 bits (927), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 191/444 (43%), Positives = 284/444 (63%), Gaps = 23/444 (5%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           +R F+++ GCQMNVYDS +M D+   S G    ++ ++AD++++NTC IREKA EKV+S 
Sbjct: 39  KRVFIETQGCQMNVYDSEKMADVLGDSHGMVLTDNPEEADVLLMNTCSIREKAQEKVFSE 98

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK    ++  +L++ V GCVA  EG++I  R+P V++V GPQT +RLPEL +++
Sbjct: 99  LGRWKKLK----EKNPNLVIGVGGCVASQEGDKIQARAPHVDMVFGPQTLHRLPELYDQS 154

Query: 144 ----------RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC 193
                     R G  VVD  +   +KF+ L        +  G  AF++I EGC K+C+FC
Sbjct: 155 TKQLDVKPKNRIG--VVDVSFPSIEKFDFLP-----EPKVEGFKAFVSIMEGCSKYCSFC 207

Query: 194 VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS 253
           VVPYTRG EISR L  V+ E   L   GV E+TLLGQNVN +RG+  DG  C FS+LL+ 
Sbjct: 208 VVPYTRGEEISRPLDDVLAEIDSLASQGVREVTLLGQNVNGYRGEKHDGTICRFSELLHY 267

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
           ++ + G+ R+RYTTSHP + SD +I+A+  +  L+ +LHLPVQSGS+ IL +M R HT  
Sbjct: 268 VAHVDGIERIRYTTSHPLEFSDDIIEAYAKIPKLVSHLHLPVQSGSNAILAAMKRNHTID 327

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
            Y + I ++R+VRPD+ +SSDFI+GFP ETD DF+ T++L   + +  ++SF YS R GT
Sbjct: 328 IYIEQIRKLRAVRPDMYLSSDFIIGFPNETDKDFQDTLNLAKDLDFDHSYSFIYSKRPGT 387

Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRS 432
           P S++ + +D   K  RL   QK + +   +     VGQ + VL+E+HG    + L+G +
Sbjct: 388 PASDLPDNIDIATKKARLAEFQKVIVDSTWAKTQGMVGQTVRVLVEQHGDRNPEFLMGTA 447

Query: 433 PWLQSVVLNSKNHNIGDIIKVRIT 456
              ++V+    +  IG ++ V++T
Sbjct: 448 DNTRTVLFKGDDALIGKLVMVKVT 471


>gi|258544941|ref|ZP_05705175.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Cardiobacterium hominis
           ATCC 15826]
 gi|258519861|gb|EEV88720.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Cardiobacterium hominis
           ATCC 15826]
          Length = 456

 Score =  361 bits (927), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 193/447 (43%), Positives = 282/447 (63%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           +  +++++GCQMN YDS +M  +   S G   V++ ++AD+++LNTC IREKA EKV+S 
Sbjct: 6   KHVYIETHGCQMNEYDSSKMLAVLKVSHGITPVDTPEEADILLLNTCSIREKAQEKVFSQ 65

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +GR + LK+++      +++ V GCVA  EGEE+ RR+P V+VV GPQT +RLP L+  A
Sbjct: 66  IGRWKPLKDAK----PHVIIAVGGCVASQEGEELRRRAPAVDVVFGPQTLHRLPNLISEA 121

Query: 144 RFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           +  +  VVD  +   +KF+ L        R  G TAF+++ EGC K+CTFCVVPYTRG E
Sbjct: 122 QEKRDGVVDVSFPEIEKFDHLP-----EPRAEGPTAFVSVMEGCSKYCTFCVVPYTRGEE 176

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR    V+ E   L   GV EI LLGQNVNA+RG   DG     + L+  ++ I G+ R
Sbjct: 177 VSRPFDDVIAECASLAAQGVREINLLGQNVNAYRGALFDGGTADLALLIEYVAAIDGIDR 236

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP + +D LI+ +  +  L+ +LHLPVQSGSD++L  M R H A +Y++ + R+
Sbjct: 237 VRFTTSHPVEFTDNLIEVYRRVPQLVSHLHLPVQSGSDKVLALMKRGHKAAQYKEKLARL 296

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R +RP+I+ SSDFIVGFPGE D DF ATM L++ + Y  +FSF YSPR GTP + M +++
Sbjct: 297 REIRPNISFSSDFIVGFPGEEDADFEATMQLIEDVFYDTSFSFIYSPRPGTPAAAMPDRI 356

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GRSPWLQSVVLN 441
             +VK  RL  LQ ++ +     +   VG    VL++   K+  K V GR+   + V   
Sbjct: 357 PMDVKKARLARLQARILQMAAQISADMVGSEQWVLVDGVSKKNDKEVCGRTENNRVVNFQ 416

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
           + +  IG   KV+IT    ++L G L+
Sbjct: 417 APHALIGRFAKVQITAAYKNSLRGRLI 443


>gi|71066321|ref|YP_265048.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Psychrobacter
           arcticus 273-4]
 gi|123775573|sp|Q4FQU4|MIAB_PSYA2 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|71039306|gb|AAZ19614.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Psychrobacter arcticus
           273-4]
          Length = 496

 Score =  360 bits (925), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 193/447 (43%), Positives = 280/447 (62%), Gaps = 23/447 (5%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ FV + GCQMNVYDS +M D+   S G E  + +D+AD++++NTC IREKA EKV+S 
Sbjct: 43  KKVFVTTQGCQMNVYDSGKMLDVLGDSHGMEVTHDIDEADVLLMNTCSIREKAQEKVFSE 102

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR R LK  R     DL++ V GCVA  EG+ I +R+P V++V GPQT +RLPEL +++
Sbjct: 103 LGRWRKLKEKR----PDLVIGVGGCVASQEGDNIQKRAPYVDMVFGPQTLHRLPELYDQS 158

Query: 144 RFGKRV--------VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
              + +        VD  +   +KF+ L        R  G  AF++I EGC K+C+FCVV
Sbjct: 159 HQQREIAPKNRIGTVDVSFPSIEKFDFLP-----EPRVEGFKAFVSIMEGCSKYCSFCVV 213

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
           PYTRG E+SR L  V+ E   L   GV EI LLGQNVN +RG+  DG  C F++LL+ +S
Sbjct: 214 PYTRGEELSRPLDDVLAEIDSLAAQGVREINLLGQNVNGYRGEKDDGNICRFAELLHYVS 273

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
            + G+ R+RYTTSHP + +D +I A+  L  L+ +LHLPVQSGS+ IL +M R HT   Y
Sbjct: 274 HVDGVERIRYTTSHPLEFTDDIIDAYAQLPELVSHLHLPVQSGSNTILAAMKRNHTIDVY 333

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
              I++++++RPDI +SSDFI+GFPGETD DF+ T+ L  ++ +  ++SF YS R GTP 
Sbjct: 334 INQINKLKAIRPDIHLSSDFIIGFPGETDQDFQDTLTLAKELNFDHSYSFIYSKRPGTPA 393

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPW 434
           + + + V    K ERL   QK + +  ++     VG    VL+E+   +    L+G +  
Sbjct: 394 AELPDDVSFKTKKERLAEFQKVIIDSTLAKTHEMVGTTTRVLVEQVANRHPDCLIGTADN 453

Query: 435 LQSVV----LNSKNHNIGDIIKVRITD 457
            ++V+    ++  +  +G I+ VRITD
Sbjct: 454 TRTVMFPYAVDKMDELLGKIVSVRITD 480


>gi|218708745|ref|YP_002416366.1| hypothetical protein VS_0724 [Vibrio splendidus LGP32]
 gi|218321764|emb|CAV17719.1| Hypothetical protein VS_0724 [Vibrio splendidus LGP32]
          Length = 474

 Score =  360 bits (925), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 194/447 (43%), Positives = 287/447 (64%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS +M D+   + GYE     ++AD+++LNTC IREKA EKV+  
Sbjct: 3   KKLLIKTWGCQMNEYDSSKMADLLNAANGYELTEVPEEADVLLLNTCSIREKAQEKVFHQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK+ +      +++ V GCVA  EG+ I +R+P V+V+ GPQT +RLPE+++ +
Sbjct: 63  LGRWKTLKDKK----EGVVIGVGGCVATQEGDHIRQRAPYVDVIFGPQTLHRLPEMIKSS 118

Query: 144 RFG-KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
               K V+D  +   +KF+ L        +  G TAF++I EGC K+CT+CVVPYTRG E
Sbjct: 119 LSNEKPVMDISFPEIEKFDNLP-----EPKAEGATAFVSIMEGCSKYCTYCVVPYTRGEE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR +  V+ E  +L + GV E+ LLGQNVNA+RG   +G+ C+F++LL  ++ I G+ R
Sbjct: 174 VSRPMDDVLFEVAQLAEQGVREVNLLGQNVNAYRGPTHEGDICSFAELLRLVASIDGIDR 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP +  D +I+ + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II ++
Sbjct: 234 IRFTTSHPLEFGDDIIEVYKDTPELVSFLHLPVQSGSDRILTMMKRPHTAIEYKSIIRKL 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R  RPDI ISSDFIVGFPGE+  DF+ TM L+ ++ +  +FSF +SPR GTP ++    V
Sbjct: 294 RKARPDIQISSDFIVGFPGESKQDFQDTMKLIKEVDFDMSFSFVFSPRPGTPAADYPCDV 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441
               K +RL  LQ+ +  Q + F+   +G    +L+E   ++   +L GR+   + V   
Sbjct: 354 PAQEKKDRLYELQQTVNTQAMRFSRLMLGTEQRILVEGPSRKNLMELRGRTENSRVVNFE 413

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                IG  + V+IT+V  ++L GELV
Sbjct: 414 GSADLIGQFVDVKITEVYTNSLRGELV 440


>gi|261400545|ref|ZP_05986670.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Neisseria lactamica ATCC
           23970]
 gi|269209614|gb|EEZ76069.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Neisseria lactamica ATCC
           23970]
          Length = 430

 Score =  360 bits (924), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 193/437 (44%), Positives = 273/437 (62%), Gaps = 13/437 (2%)

Query: 36  MNVYDSLRMEDMFFSQ--GYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNS 93
           MN YDS +M  +   +  G E+V   DDAD+I+ NTC +REKA EKV+S LGR+R LK  
Sbjct: 1   MNEYDSDKMLAVLAEEHGGIEQVTQPDDADIILFNTCSVREKAQEKVFSDLGRVRPLK-- 58

Query: 94  RIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-ERARFGKRVVDT 152
             ++   L++ VAGCVA  EGE I++R+P V+VV GPQT +RLP+++ ++   G   VD 
Sbjct: 59  --EKNPGLIIGVAGCVASQEGENIIKRAPYVDVVFGPQTLHRLPKMIVDKETSGLSQVDI 116

Query: 153 DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVD 212
            +   +KF+ L        R  G  AF++I EGC K+C+FCVVPYTRG E SR L+ V+ 
Sbjct: 117 SFPEIEKFDHLPPA-----RVEGGAAFVSIMEGCSKYCSFCVVPYTRGEEFSRPLNDVLT 171

Query: 213 EARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
           E   L+  GV EI LLGQNVNA+RG+  +GE C F+ LL  + EI G+ RLR+TTSHPR+
Sbjct: 172 EIAGLVQQGVKEINLLGQNVNAYRGEMENGEICDFATLLRIVHEIPGIERLRFTTSHPRE 231

Query: 273 MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAIS 332
            +D +I+ + DL  L+ +LHLP+QSGSDR+L +M R +TA EY+ II ++R++RPD+ +S
Sbjct: 232 FTDSIIECYRDLPKLVSHLHLPIQSGSDRVLSAMKRGYTALEYKSIIRKLRAIRPDLCLS 291

Query: 333 SDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLL 392
           SDFIVGFPGET+ +F  T+ LV  I +  +F F YSPR GTP +N+ +      K  RL 
Sbjct: 292 SDFIVGFPGETEREFEQTLKLVKDIAFDLSFVFIYSPRPGTPAANLPDDTPHEEKVRRLE 351

Query: 393 CLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSVVLNSKNHNIGDII 451
            L + +  +    N   VG +   L+E    K+  +L  R+   + V        I  +I
Sbjct: 352 ALNEVIEAETARINQTMVGTVQRCLVEGISKKDPDQLQARTANNRVVNFTGTPDMINQMI 411

Query: 452 KVRITDVKISTLYGELV 468
            + IT+    +L G+ V
Sbjct: 412 DLEITEAYTFSLRGKTV 428


>gi|84394394|ref|ZP_00993113.1| tRNA 2-methylthioadenosine synthase [Vibrio splendidus 12B01]
 gi|84374996|gb|EAP91924.1| tRNA 2-methylthioadenosine synthase [Vibrio splendidus 12B01]
          Length = 474

 Score =  360 bits (924), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 194/447 (43%), Positives = 287/447 (64%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS +M D+   + GYE     ++AD+++LNTC IREKA EKV+  
Sbjct: 3   KKLLIKTWGCQMNEYDSSKMADLLNAANGYELTEVPEEADVLLLNTCSIREKAQEKVFHQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK+ +      +++ V GCVA  EG+ I +R+P V+V+ GPQT +RLPE+++ +
Sbjct: 63  LGRWKTLKDKK----EGVVIGVGGCVATQEGDHIRQRAPYVDVIFGPQTLHRLPEMIKSS 118

Query: 144 RFG-KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
               K V+D  +   +KF+ L        +  G TA+++I EGC K+CT+CVVPYTRG E
Sbjct: 119 LSNEKPVMDISFPEIEKFDNLP-----EPKADGATAYVSIMEGCSKYCTYCVVPYTRGEE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR +  V+ E  +L + GV E+ LLGQNVNA+RG   +G+ CTF++LL  ++ I G+ R
Sbjct: 174 VSRPMDDVLYEVAQLAEQGVREVNLLGQNVNAFRGPTYEGDICTFAELLRLVASIDGIDR 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP +  D +I+ + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II ++
Sbjct: 234 IRFTTSHPLEFGDDIIEVYKDTPELVSFLHLPVQSGSDRILTMMKRPHTAIEYKSIIRKL 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R  RPDI ISSDFIVGFPGE+  DF+ TM L+ ++ +  +FSF +SPR GTP ++    V
Sbjct: 294 RKARPDIQISSDFIVGFPGESKQDFQDTMKLIKEVDFDMSFSFVFSPRPGTPAADYPCDV 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441
               K +RL  LQ+ +  Q + F+   +G    +L+E   ++   +L GR+   + V   
Sbjct: 354 PAQEKKDRLWELQQTVNTQAMRFSRLMLGTEQRILVEGPSRKNLMELRGRTENSRVVNFE 413

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                IG  + V+IT+V  ++L GELV
Sbjct: 414 GSADLIGQFVDVKITEVYTNSLRGELV 440


>gi|261855784|ref|YP_003263067.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Halothiobacillus
           neapolitanus c2]
 gi|261836253|gb|ACX96020.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Halothiobacillus
           neapolitanus c2]
          Length = 482

 Score =  360 bits (923), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 189/447 (42%), Positives = 283/447 (63%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS +M D+   + G+   +   +AD+++LNTC IREKA EKV+S 
Sbjct: 27  RKLHIKTWGCQMNEYDSSKMADVLGANSGFIATDDPAEADVLLLNTCSIREKAQEKVFSQ 86

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LG+ R LK    ++  +L++ V GCVA  EG  I  R+P V++V GPQT +RLPE++   
Sbjct: 87  LGQWRPLK----EKNPNLIIGVGGCVASQEGASIRTRAPYVDIVFGPQTLHRLPEMVAAV 142

Query: 144 RFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
              ++ VVD  +   +KF+ L        R  G TAF++I EGC K+C+FCVVPYTRG E
Sbjct: 143 EANRKPVVDISFPEIEKFDNLPA-----PRAEGPTAFVSIMEGCSKYCSFCVVPYTRGEE 197

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           ISR    V+ E  +L + GV E+ LLGQNVNA+RG   DG+    + L+  ++ I  + R
Sbjct: 198 ISRPFDDVIAEVAELAEQGVREVNLLGQNVNAYRGVMHDGQIADLALLIEYIARIDSIGR 257

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP + +D LI+A+ ++  L  YLHLPVQ GSDRIL  M R HT  EY+  + ++
Sbjct: 258 IRFTTSHPVEFTDRLIEAYRNVPKLAAYLHLPVQVGSDRILALMKRGHTVIEYKAKLRKL 317

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
            + RP I++SSDFI+GFPGET++DF ATM LV  + +  +FSF YS R GTP +++ +  
Sbjct: 318 MAARPGISLSSDFIIGFPGETEEDFEATMKLVTDMHFDHSFSFIYSARPGTPAASLPDDQ 377

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSPWLQSVVLN 441
            E VK  RL  LQ ++  Q+ + + A +  +  +L+     K+  +LVG++   +SV+  
Sbjct: 378 PEAVKKARLHRLQAQITAQEQAISQAMLDTVQTILVTGPSKKDPDELVGKTENNRSVIFK 437

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
           ++    G  + VRIT+VK ++L  + V
Sbjct: 438 ARPELAGLFVDVRITEVKPNSLRADFV 464


>gi|160872066|ref|ZP_02062198.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Rickettsiella grylli]
 gi|159120865|gb|EDP46203.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Rickettsiella grylli]
          Length = 443

 Score =  360 bits (923), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 194/445 (43%), Positives = 282/445 (63%), Gaps = 12/445 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ +++++GCQMNVYDS  + ++   S G    ++ ++AD+IVLNTC IREKA EKV+S 
Sbjct: 4   KKIYIETHGCQMNVYDSDSLYNLLHHSHGLCLTSNPNEADVIVLNTCSIREKAQEKVFSQ 63

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LG+ R +K+ R     D+++ + GCVA  EG  I+ R+P V++V GPQT +RLP+++   
Sbjct: 64  LGQWRKIKSLR----RDIIIAIGGCVASQEGSAIISRAPFVDIVFGPQTLHRLPDMINDV 119

Query: 144 RFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
              K+ +VD  +   +KF+ L        R  G  A ++I EGC+K+C+FCVVPYTRG E
Sbjct: 120 LEKKQPIVDISFPEIEKFDNLP-----EPRAEGPRALVSIMEGCNKYCSFCVVPYTRGEE 174

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           ISR L  V+ E   L   GV EITLLGQNVN ++G   +G     +DL+  ++ I  ++R
Sbjct: 175 ISRPLDDVLAEVVHLSQQGVREITLLGQNVNDYQGPRFEGGTADLADLIRYIAAIDDILR 234

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP   SD LI+A+ D+  L  +LHLPVQSGSD+IL +M R +T  E++  + ++
Sbjct: 235 IRFTTSHPLAFSDRLIQAYADIPKLANHLHLPVQSGSDKILAAMKRGYTVLEFKSKLRQL 294

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R VRP IA SSDFIVGFPGET+ DFRAT+ LV+ IG+  +FSF YS R GTP + + + V
Sbjct: 295 RQVRPTIAFSSDFIVGFPGETEADFRATLQLVESIGFDHSFSFIYSRRPGTPAAELPDSV 354

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRSPWLQSVVLN 441
               K +RL  LQ  L  Q  + +    G I  +L+E   K+ K +L GR+   + V   
Sbjct: 355 SLATKKQRLQILQNLLVFQGQTLSKKMCGTIQPILVEGPSKKNKEELQGRTENNRVVNFK 414

Query: 442 SKNHNIGDIIKVRITDVKISTLYGE 466
              H IG ++ + IT+V  ++L GE
Sbjct: 415 GPLHWIGQLVPITITEVLRNSLRGE 439


>gi|167626244|ref|YP_001676744.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Francisella
           philomiragia subsp. philomiragia ATCC 25017]
 gi|229890537|sp|B0TXS4|MIAB_FRAP2 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|167596245|gb|ABZ86243.1| 2-alkenal reductase [Francisella philomiragia subsp. philomiragia
           ATCC 25017]
          Length = 442

 Score =  360 bits (923), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 194/448 (43%), Positives = 282/448 (62%), Gaps = 14/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEKVYS 82
           ++ F+K+ GCQMN YDS +M ++   + +  V + D  +AD+I++NTC IREKA EKV+ 
Sbjct: 5   KKVFIKTLGCQMNEYDSQKMHEVL-DEHFHTVKTDDYKEADIILINTCSIREKAQEKVFH 63

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            LGR +NLK    K+  DL++ V GCVA  EGE I++R+P V++V GPQT +RLPE+++R
Sbjct: 64  ELGRWKNLK----KKKEDLVIGVGGCVASQEGENIIKRAPFVDLVFGPQTIHRLPEMIKR 119

Query: 143 ARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
            +  +   VD  +   +KF+ L        +  G  A+++I EGCDK+C++CVVPYTRG 
Sbjct: 120 KQSTQESQVDISFPEVEKFDFLP-----EPKAEGAKAYVSIMEGCDKYCSYCVVPYTRGP 174

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E++R    V+ E   L + GV EITLLGQNVN + G   +GE    + L++ ++EI G+ 
Sbjct: 175 EVNRPFEDVLGECAALAEQGVKEITLLGQNVNHYLGPMENGETADLALLIHFIAEIDGIE 234

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHP + S  LI A+G +  L  +LHLPVQ GSDR+L +M R HT  E++Q I +
Sbjct: 235 RIRFTTSHPVEFSQNLIDAYGSVPELANHLHLPVQHGSDRVLINMKRNHTILEFKQKIRK 294

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R++RPDI ISSDFIVGFPGET++DF+  MDLV  + + Q+FSF YS R GTP +++ + 
Sbjct: 295 LRAIRPDITISSDFIVGFPGETEEDFQKLMDLVKDVNFDQSFSFIYSKRPGTPAADLPDD 354

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440
               VK +RL  LQ  L       +   VG    +L+E   K+    L GR+   + V  
Sbjct: 355 TPMEVKKDRLKRLQDLLNSNAQIISRQMVGTEQRILVEGTSKKDDNVLAGRTENNRIVNF 414

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 IG    V+IT+   ++L GEL+
Sbjct: 415 IGDKSLIGQFAMVKITESLPNSLRGELI 442


>gi|262370519|ref|ZP_06063844.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Acinetobacter johnsonii
           SH046]
 gi|262314319|gb|EEY95361.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Acinetobacter johnsonii
           SH046]
          Length = 485

 Score =  360 bits (923), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 193/455 (42%), Positives = 286/455 (62%), Gaps = 20/455 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ ++++ GCQMN YDS RM D+   S GY       +AD++++NTC IREKA EKV+S 
Sbjct: 33  KKLYIETQGCQMNEYDSHRMADLLGDSHGYVLTQDPKEADILLMNTCSIREKAQEKVFSE 92

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER- 142
           LGR R LK+    +  DL++ V GCVA  EG+ I +R+  V+++ GPQT +RLP++L++ 
Sbjct: 93  LGRWRKLKD----KNPDLIIGVGGCVASQEGDNIQKRANYVDMIFGPQTLHRLPQMLDQH 148

Query: 143 -------ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
                   +   ++VD  +   +KF+ L        R  G  AF++I EGC K+C+FCVV
Sbjct: 149 FDQIEKPKKEKIKLVDISFPDIEKFDFLP-----EPRVEGYKAFVSIMEGCSKYCSFCVV 203

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
           PYTRG E+SR L  V+ E   L + GV EI+LLGQNVN +RG+  +G  CTF+DLL  ++
Sbjct: 204 PYTRGEEVSRPLDDVLAEIATLAEKGVREISLLGQNVNGYRGETFEGNICTFADLLRLVA 263

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
           EI G+ RLRYTTSHP + +D LI+ + DL  ++ +LHLPVQSGS+ +L++M R HT   Y
Sbjct: 264 EIPGIGRLRYTTSHPLEFNDDLIECYRDLPQMVSHLHLPVQSGSNDVLQAMKRNHTIDVY 323

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
              I ++R VRPD+ +SSDFI+GFPGETD  F  T   +  + +  ++SF YS R GTP 
Sbjct: 324 IDKIAKLRKVRPDMHLSSDFIIGFPGETDAHFEETYQFIKDMDFDHSYSFVYSKRPGTPA 383

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPW 434
           S++ +   E VK ERL  +QK ++   +   DA +G I  VL+EK   K+   L+G +  
Sbjct: 384 SDLEDTTSEEVKKERLSKVQKWIKRSSIDKTDAMLGTIQRVLVEKVSDKDPNLLIGTADN 443

Query: 435 LQSVVLNSKNHNIGDIIKVRITDVK-ISTLYGELV 468
            + V        +G   ++ +T++K ++ +YGEL+
Sbjct: 444 TRYVSFIGDATWVGRFAEIEVTEIKTLNFVYGELL 478


>gi|241668686|ref|ZP_04756264.1| 2-alkenal reductase [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
 gi|254877218|ref|ZP_05249928.1| conserved hypothetical protein [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254843239|gb|EET21653.1| conserved hypothetical protein [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 442

 Score =  359 bits (922), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 194/448 (43%), Positives = 282/448 (62%), Gaps = 14/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEKVYS 82
           ++ F+K+ GCQMN YDS +M ++   + +  V + D  +AD+I++NTC IREKA EKV+ 
Sbjct: 5   KKVFIKTLGCQMNEYDSQKMHEVL-DEHFHTVKTDDYKEADIILINTCSIREKAQEKVFH 63

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            LGR +NLK    K+  DL++ V GCVA  EGE I++R+P V++V GPQT +RLPE+++R
Sbjct: 64  ELGRWKNLK----KKKEDLVIGVGGCVASQEGENIIKRAPFVDLVFGPQTIHRLPEMIKR 119

Query: 143 ARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
            +  +   VD  +   +KF+ L        +  G  A+++I EGCDK+C++CVVPYTRG 
Sbjct: 120 KQSTQESQVDISFPEVEKFDFLP-----EPKAEGAKAYVSIMEGCDKYCSYCVVPYTRGP 174

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E++R    V+ E   L + GV EITLLGQNVN + G   +GE    + L++ ++EI G+ 
Sbjct: 175 EVNRPFEDVLGECAALAEQGVKEITLLGQNVNHYLGPMENGETADLALLIHFIAEIDGIE 234

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHP + S  LI A+G +  L  +LHLPVQ GSDR+L +M R HT  E++Q I +
Sbjct: 235 RIRFTTSHPVEFSQNLIDAYGSVPELANHLHLPVQHGSDRVLINMKRNHTILEFKQKIRK 294

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R++RPDI ISSDFIVGFPGET++DF+  MDLV  + + Q+FSF YS R GTP +++ + 
Sbjct: 295 LRAIRPDITISSDFIVGFPGETEEDFQKLMDLVKDVNFDQSFSFIYSKRPGTPAADLPDD 354

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440
               VK +RL  LQ  L       +   VG    +L+E   K+    L GR+   + V  
Sbjct: 355 TPIEVKKDRLKRLQDLLNSNAQIISRQMVGTEQRILVEGTSKKDDNVLAGRTENNRIVNF 414

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 IG    V+IT+   ++L GEL+
Sbjct: 415 IGDKSLIGQFAMVKITESLPNSLRGELI 442


>gi|332526540|ref|ZP_08402652.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Rubrivivax
           benzoatilyticus JA2]
 gi|332110808|gb|EGJ10985.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Rubrivivax
           benzoatilyticus JA2]
          Length = 444

 Score =  359 bits (922), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 196/453 (43%), Positives = 287/453 (63%), Gaps = 20/453 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQG-YERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ +++++GCQMN YDS +M D+  + G YE  +  + ADL++ NTC +REKA EKV+S 
Sbjct: 2   KKVYIRTFGCQMNEYDSAKMADVLNAAGGYEPTDDPEQADLVLFNTCSVREKAQEKVFSD 61

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR+++LK    K+G  +L+ V GCVA  EG  I+ R+P V++V GPQT +RLP+++  A
Sbjct: 62  LGRVKHLK----KKG--VLIGVGGCVASQEGAAIIERAPYVDMVFGPQTLHRLPQMIA-A 114

Query: 144 RFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           R  +R   VD  +   +KF+ L        R  G +AF++I EGC K+CT+CVVPYTRG 
Sbjct: 115 RSNERRPQVDISFPEIEKFDHLPP-----PRIEGASAFVSIMEGCSKYCTYCVVPYTRGE 169

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-GLDGEKCTFSDLLYSLSEIKGL 260
           E+SR    V+ E   L D GV E+TLLGQNVNA+RG  G  GE    + LL  ++E+ G+
Sbjct: 170 EVSRPFEDVLTEVADLADRGVKEVTLLGQNVNAYRGAMGESGEIADLALLLEYVAEVPGI 229

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+TTSHP + +  LI+A+G +  L+ +LHLPVQ GSDRIL +M R +TA EY+  I 
Sbjct: 230 ERIRFTTSHPNEFTQRLIEAYGRIPKLVSHLHLPVQHGSDRILSAMKRGYTALEYKSTIR 289

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R  RP I++SSDFIVGFPGET+DDF  TM L+D +GY  +FSF YS R GTP + + +
Sbjct: 290 KLREQRPGISLSSDFIVGFPGETEDDFAKTMKLIDDVGYDASFSFVYSQRPGTPAAALDD 349

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVV 439
              + +K  RL  LQ  +       + + VG    +L+E   K+  + L+GR+   + V 
Sbjct: 350 DTPQELKLARLQTLQAAIEANVRRISASRVGTRQTILVEGPSKKNPQELMGRTECNRIVN 409

Query: 440 LN---SKNHNIGDIIKVRITDVKISTLYGELVV 469
            +   + +  IG ++ V IT+    +L G  V+
Sbjct: 410 FDGGPTPSRLIGQMLDVTITEALPHSLRGTPVL 442


>gi|86148579|ref|ZP_01066864.1| tRNA 2-methylthioadenosine synthase [Vibrio sp. MED222]
 gi|85833645|gb|EAQ51818.1| tRNA 2-methylthioadenosine synthase [Vibrio sp. MED222]
          Length = 474

 Score =  359 bits (922), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 194/447 (43%), Positives = 287/447 (64%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS +M D+   + GYE     ++AD+++LNTC IREKA EKV+  
Sbjct: 3   KKLLIKTWGCQMNEYDSSKMADLLNAANGYELTEVPEEADVLLLNTCSIREKAQEKVFHQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK+ +      +++ V GCVA  EG+ I +R+P V+V+ GPQT +RLPE+++ +
Sbjct: 63  LGRWKTLKDKK----EGVVIGVGGCVATQEGDHIRQRAPYVDVIFGPQTLHRLPEMIKSS 118

Query: 144 RFG-KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
               K V+D  +   +KF+ L        +  G TA+++I EGC K+CT+CVVPYTRG E
Sbjct: 119 LSNEKPVMDISFPEIEKFDNLP-----EPKADGATAYVSIMEGCSKYCTYCVVPYTRGEE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR +  V+ E  +L + GV E+ LLGQNVNA+RG   +G+ CTF++LL  ++ I G+ R
Sbjct: 174 VSRPMDDVLFEVAQLAEQGVREVNLLGQNVNAFRGPTHEGDICTFAELLRLVASIDGIDR 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP +  D +I+ + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II ++
Sbjct: 234 IRFTTSHPLEFGDDIIEVYKDTPELVSFLHLPVQSGSDRILTMMKRPHTAIEYKSIIRKL 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R  RPDI ISSDFIVGFPGE+  DF+ TM L+ ++ +  +FSF +SPR GTP ++    V
Sbjct: 294 RKARPDIQISSDFIVGFPGESKQDFQDTMKLIKEVDFDMSFSFVFSPRPGTPAADYPCDV 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441
               K +RL  LQ+ +  Q + F+   +G    +L+E   ++   +L GR+   + V   
Sbjct: 354 PAQEKKDRLYELQQTVNTQAMRFSRLMLGTEQRILVEGPSRKNLMELRGRTENSRVVNFE 413

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                IG  + V+IT+V  ++L GELV
Sbjct: 414 GSADLIGQFVDVKITEVYTNSLRGELV 440


>gi|254670995|emb|CBA07742.1| conserved hypothetical protein [Neisseria meningitidis alpha153]
          Length = 430

 Score =  359 bits (921), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 191/437 (43%), Positives = 273/437 (62%), Gaps = 13/437 (2%)

Query: 36  MNVYDSLRMEDMFFSQ--GYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNS 93
           MN YDS +M  +   +  G E+V   D+AD+I+ NTC +REKA EKV+S LGR+R LK  
Sbjct: 1   MNEYDSDKMLAVLAEEHGGIEQVTQADEADIILFNTCSVREKAQEKVFSDLGRVRPLK-- 58

Query: 94  RIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-ERARFGKRVVDT 152
             ++   L++ VAGCVA  EGE I++R+P V+VV GPQT +RLP+++ ++   G   VD 
Sbjct: 59  --EKNPGLIIGVAGCVASQEGENIIKRAPYVDVVFGPQTLHRLPKMIVDKETSGLSQVDI 116

Query: 153 DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVD 212
            +   +KF+ L        R  G  AF++I EGC K+C+FCVVPYTRG E SR L+ V+ 
Sbjct: 117 SFPEIEKFDHLPPA-----RVEGGAAFVSIMEGCSKYCSFCVVPYTRGEEFSRPLNDVLT 171

Query: 213 EARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
           E   L   GV EI LLGQNVNA+RG+  DGE C F+ LL  + EI G+ R+R+TTSHPR+
Sbjct: 172 EIANLAQQGVKEINLLGQNVNAYRGEMDDGEICDFATLLRIVHEIPGIERMRFTTSHPRE 231

Query: 273 MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAIS 332
            +D +I+ + DL  L+ +LHLP+QSGSDR+L +M R +TA EY+ II ++R++RPD+ +S
Sbjct: 232 FTDSIIECYRDLPKLVSHLHLPIQSGSDRVLSAMKRGYTALEYKSIIRKLRAIRPDLCLS 291

Query: 333 SDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLL 392
           SDFIVGFPGET+ +F  T+ LV  I +  +F F YSPR GTP +N+ +      K  RL 
Sbjct: 292 SDFIVGFPGETEREFEQTLKLVKDIAFDLSFVFIYSPRPGTPAANLHDDTPHEEKVRRLE 351

Query: 393 CLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSVVLNSKNHNIGDII 451
            L + +  +    N   +G +   L+E    K+  +L  R+   + V        I  +I
Sbjct: 352 ALNEVIEAETARINQTMIGTVQRCLVEGISKKDPDQLQARTANNRVVNFTGTPDMINQMI 411

Query: 452 KVRITDVKISTLYGELV 468
            + IT+    +L G++V
Sbjct: 412 DLEITEAYTFSLRGKVV 428


>gi|262165204|ref|ZP_06032941.1| tRNA-i(6)A37 methylthiotransferase [Vibrio mimicus VM223]
 gi|262024920|gb|EEY43588.1| tRNA-i(6)A37 methylthiotransferase [Vibrio mimicus VM223]
          Length = 461

 Score =  359 bits (921), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 197/436 (45%), Positives = 282/436 (64%), Gaps = 12/436 (2%)

Query: 36  MNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSR 94
           MN YDS +M D+   + GYE     ++AD+++LNTC IREKA EKV+  LGR + LK+ +
Sbjct: 1   MNEYDSSKMADLLNAANGYELTEIPEEADVLLLNTCSIREKAQEKVFHQLGRWKTLKDKK 60

Query: 95  IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR-VVDTD 153
                 +++ V GCVA  EG+ I  R+P V+V+ GPQT +RLPE++++++  +  V+D  
Sbjct: 61  ----PGVVIGVGGCVATQEGDSIRDRAPYVDVIFGPQTLHRLPEMIKQSQISEAPVMDIS 116

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           +   +KF+RL        R  G TAF++I EGC K+CT+CVVPYTRG E+SR +  V+ E
Sbjct: 117 FPEIEKFDRLP-----EPRAEGPTAFVSIMEGCSKYCTYCVVPYTRGEEVSRPMDDVLFE 171

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
             +L + GV E+ LLGQNVNA+RG   DGE C+F++LL  ++ I G+ R+R+TTSHP + 
Sbjct: 172 IAQLAEQGVREVNLLGQNVNAYRGATHDGEICSFAELLRLVATIDGIDRIRFTTSHPLEF 231

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
           +D +I  + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II ++R  RPDI ISS
Sbjct: 232 TDDIIAVYEDTPELVSFLHLPVQSGSDRILTMMKRPHTAIEYKSIIRKLRKARPDIQISS 291

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLC 393
           DFIVGFPGETD DF+ TM L+  + +  +FSF +SPR GTP ++    + E VK ERL  
Sbjct: 292 DFIVGFPGETDKDFQDTMKLIRDVDFDMSFSFIFSPRPGTPAADYPCDLSEEVKKERLYE 351

Query: 394 LQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNSKNHNIGDIIK 452
           LQ+++  Q + ++   +G    +L+E   K+   +L GR+   + V        IG  + 
Sbjct: 352 LQQQINSQAMRYSRLMLGTEQRILVEGPSKKDLMELRGRTENNRVVNFEGSPELIGQFVD 411

Query: 453 VRITDVKISTLYGELV 468
           V+I DV  ++L GELV
Sbjct: 412 VKIVDVFANSLRGELV 427


>gi|323170787|gb|EFZ56437.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli LT-68]
 gi|332096864|gb|EGJ01854.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Shigella dysenteriae
           155-74]
          Length = 453

 Score =  359 bits (921), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 188/422 (44%), Positives = 275/422 (65%), Gaps = 13/422 (3%)

Query: 50  SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCV 109
           + GY+  +  ++AD+++LNTC IREKA EKV+  LGR + LK    ++  DL++ V GCV
Sbjct: 8   THGYQLTDVAEEADVLLLNTCSIREKAQEKVFHQLGRWKLLK----EKNPDLIIGVGGCV 63

Query: 110 AQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR--VVDTDYSVEDKFERLSIVD 167
           A  EGE I +R+  V+++ GPQT +RLPE++   R G R  VVD  +   +KF+RL    
Sbjct: 64  ASQEGEHIRQRAHYVDIIFGPQTLHRLPEMINSVR-GDRSPVVDISFPEIEKFDRLP--- 119

Query: 168 GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITL 227
               R  G TAF++I EGC+K+CT+CVVPYTRG E+SR    ++ E  +L   GV E+ L
Sbjct: 120 --EPRAEGPTAFVSIMEGCNKYCTYCVVPYTRGEEVSRPSDDILFEIAQLAAQGVREVNL 177

Query: 228 LGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL 287
           LGQNVNAWRG+  DG   +F+DLL  ++ I G+ R+R+TTSHP + +D +I+ + D   L
Sbjct: 178 LGQNVNAWRGENYDGTTGSFADLLRLVAAIDGIDRIRFTTSHPIEFTDDIIEVYRDTPEL 237

Query: 288 MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDF 347
           + +LHLPVQSGSDRIL  M R HTA EY+ II ++R+ RPDI ISSDFIVGFPGET +DF
Sbjct: 238 VSFLHLPVQSGSDRILNLMGRTHTALEYKAIIRKLRAARPDIQISSDFIVGFPGETTEDF 297

Query: 348 RATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFND 407
             TM L+  + +  ++SF +S R GTP ++M++ V E  K +RL  LQ+++ +Q ++++ 
Sbjct: 298 EKTMKLIADVNFDMSYSFIFSARPGTPAADMVDDVPEEEKKQRLYILQERINQQAMAWSR 357

Query: 408 ACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGE 466
             +G    +L+E   ++   +L GR+   + V        IG  + V ITDV  ++L G+
Sbjct: 358 RMLGTTQRILVEGTSRKSIMELSGRTENNRVVNFEGTPDMIGKFVDVEITDVYPNSLRGK 417

Query: 467 LV 468
           +V
Sbjct: 418 VV 419


>gi|145590038|ref|YP_001156635.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
 gi|229890594|sp|A4T007|MIAB_POLSQ RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|145048444|gb|ABP35071.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
          Length = 448

 Score =  359 bits (921), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 191/451 (42%), Positives = 287/451 (63%), Gaps = 16/451 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ ++K++GCQMN YDS +M D+  + +G    ++ +DAD+++LNTC IREKA +KV+S 
Sbjct: 2   KKLYIKTFGCQMNEYDSGKMADLLHADEGMVMTDTPEDADVVLLNTCSIREKAEDKVFSD 61

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-ER 142
           LGR+R LK ++      +L+ V GCVA  EG +I+ R+P V+VV GPQT +RL +L+ +R
Sbjct: 62  LGRLRELKKTK----PHMLIGVGGCVASQEGRQIVSRAPYVDVVFGPQTLHRLSDLIAQR 117

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            + G   VD  +   +KF+ L       +R+   +A+++I EGC K+C++CVVPYTRG E
Sbjct: 118 RKTGLSQVDISFPEIEKFDHLPA-----SRQTRGSAYVSIMEGCSKYCSYCVVPYTRGEE 172

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT-FSDLLYSLSEIKGLV 261
           +SR    V+ E   L   GV EI LLGQNVNA+ GK  D E+   F+ L+  ++EI G+ 
Sbjct: 173 VSRPFDDVLTEVAGLASKGVKEIVLLGQNVNAYLGKMGDAEEIADFALLIEYIAEIPGVE 232

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHP++ +  LI  +  +  L+ +LHLPVQ GSD IL +M R +TA EY+ II +
Sbjct: 233 RIRFTTSHPKEFTQRLIDVYAKVPKLVSHLHLPVQHGSDSILSAMKRGYTALEYKSIIRK 292

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R+VRPD+ +SSDFIVGFPGETD DF   + +V ++ +  +F F +SPR GTP +N+ + 
Sbjct: 293 MRAVRPDLTLSSDFIVGFPGETDADFEKLLKMVQELDFDNSFCFIFSPRPGTPAANLSDD 352

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
               VK +RL  L   +  Q    +   +G+   VLIE   K+   L GR+   + +  +
Sbjct: 353 TPYEVKLKRLQTLLALIEGQSNQISQKMLGKTERVLIEGLAKDGVNLQGRAENNRVIHFS 412

Query: 442 SKNHN----IGDIIKVRITDVKISTLYGELV 468
             + N    IG+++ +RIT+V   TL GELV
Sbjct: 413 PPDQNIDGLIGEMVDIRITEVLNYTLRGELV 443


>gi|146284073|ref|YP_001174226.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Pseudomonas stutzeri
           A1501]
 gi|145572278|gb|ABP81384.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Pseudomonas stutzeri
           A1501]
          Length = 406

 Score =  358 bits (918), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 192/411 (46%), Positives = 265/411 (64%), Gaps = 17/411 (4%)

Query: 61  DADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRR 120
           +AD+I+LNTC IREKA EKV+S LGR R LK    ++   L++ V GCVA  EG  I  R
Sbjct: 9   EADVILLNTCSIREKAQEKVFSQLGRWRELK----QDNPQLVIGVGGCVASQEGAAIRDR 64

Query: 121 SPIVNVVVGPQTYYRLPELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAF 179
           +P V+VV GPQT +RLPE+++ AR  +   VD  +   +KF+RL        R  G +A+
Sbjct: 65  APYVDVVFGPQTLHRLPEMIDAARTTRTPQVDISFPEIEKFDRLP-----EPRVDGPSAY 119

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
           +++ EGC K+CTFCVVPYTRG E+SR L+ V+ E   L +NGV E+TLLGQNVN +R  G
Sbjct: 120 VSVMEGCSKYCTFCVVPYTRGEEVSRPLADVLAEIVHLAENGVKEVTLLGQNVNGYRHDG 179

Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
            D     F+DLL++++ I G+ R+RYTTSHP + SD +I+AH D+  L+ YLHLPVQ+GS
Sbjct: 180 HD-----FADLLHAVAAIDGIGRIRYTTSHPLEFSDAIIQAHADIPQLVKYLHLPVQAGS 234

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
           DRIL +M R HTA EY+  I R+++  PDI ISSDFIVGFPGETD DF  TM L++ +G+
Sbjct: 235 DRILAAMKRNHTALEYKSRIRRLKAAVPDILISSDFIVGFPGETDKDFEQTMKLIEDVGF 294

Query: 360 AQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419
             ++SF YS R GTP +++ +   E VK +RL  LQ+++ +Q    +   VG    +L+ 
Sbjct: 295 DFSYSFVYSARPGTPAADLADDTPEEVKKQRLAILQQRINQQGFENSRRMVGTTQRILVS 354

Query: 420 KHG-KEKGKLVGRSPWLQSVVLNSKNHN-IGDIIKVRITDVKISTLYGELV 468
            +  K+ G L GR+   + V     N   IG  + V I D    +L G L+
Sbjct: 355 DYSKKDPGMLQGRTEHNRIVNFRCDNPRLIGQFVDVHIDDALPHSLRGSLL 405


>gi|332678361|gb|AEE87490.1| tRNA-i(6)A37 methylthiotransferase [Francisella cf. novicida Fx1]
          Length = 442

 Score =  357 bits (915), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 192/448 (42%), Positives = 282/448 (62%), Gaps = 14/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEKVYS 82
           ++ F+K+ GCQMN YDS RM ++  ++ ++ V + D  DAD+I++NTC IREKA EKV+ 
Sbjct: 5   KKVFIKTLGCQMNEYDSARMHEVL-NEHFDTVKTDDYKDADIILINTCSIREKAQEKVFH 63

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-E 141
            LGR + LK    K   DL++ V GCVA  EGE I++R+P V++V GPQT +RLPE++ +
Sbjct: 64  ELGRWKGLK----KTNEDLIIGVGGCVASQEGENIIKRAPFVDLVFGPQTIHRLPEMIRQ 119

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           + +  +  VD  +   +KF+ L        +  G  A+++I EGCDK+C++CVVPYTRG 
Sbjct: 120 KQKTQQSQVDISFPEVEKFDYLP-----EPKAEGAKAYVSIMEGCDKYCSYCVVPYTRGP 174

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E++R    V+ E   L + GV EITLLGQNVN + G   +G+    + L++ ++EI G+ 
Sbjct: 175 EVNRPFEDVLAECAILAEQGVKEITLLGQNVNHYLGPMENGQTADLALLIHFIAEIDGIE 234

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHP + S  LI A+  +  L  +LHLPVQ GSDRIL +M R HT  E++Q I +
Sbjct: 235 RIRFTTSHPVEFSQNLIDAYATVPELANHLHLPVQHGSDRILINMKRNHTILEFKQKIRK 294

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R++RPDI ISSDFIVGFPGET++DF+  +DLV +I + Q+FSF YS R GTP +++ + 
Sbjct: 295 LRAIRPDITISSDFIVGFPGETEEDFQKLLDLVKEINFDQSFSFIYSKRPGTPAADLPDD 354

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440
               VK +RL  LQ  L       +   VG    +L++   K+    L GR+   + V  
Sbjct: 355 TPMEVKKDRLKRLQDLLNSNAQIISRQMVGTNQRILVDGTSKKDDNILSGRTENNRVVNF 414

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 IG    V+IT+   ++L GEL+
Sbjct: 415 KGDKSLIGQFAMVKITESLPNSLRGELI 442


>gi|163752490|ref|ZP_02159679.1| tRNA-i(6)A37 modification enzyme MiaB [Shewanella benthica KT99]
 gi|161327634|gb|EDP98829.1| tRNA-i(6)A37 modification enzyme MiaB [Shewanella benthica KT99]
          Length = 461

 Score =  357 bits (915), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 188/436 (43%), Positives = 276/436 (63%), Gaps = 12/436 (2%)

Query: 36  MNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSR 94
           MN YDS +M D+    +GY   +   +AD+++LNTC IREKA EKV+  LGR + LK+  
Sbjct: 1   MNEYDSSKMADLMDEYKGYTLTDDAAEADVLLLNTCSIREKAQEKVFHQLGRWKKLKD-- 58

Query: 95  IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG-KRVVDTD 153
             +  +L++ V GCVA  EG+ I  R+  V+++ GPQT +RLPE++++ + G K V+D  
Sbjct: 59  --KNPNLIIGVGGCVASQEGKMIKERAQCVDIIFGPQTLHRLPEMIDQVKQGGKAVIDIS 116

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           +   +KF+RL        R  G TAF++I EGC K+C+FCVVPYTRG E+SR +  V+ E
Sbjct: 117 FPEIEKFDRLP-----EPRADGPTAFVSIMEGCSKYCSFCVVPYTRGEEVSRPVDDVILE 171

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
             +L + GV E+ LLGQNVNA+RG   D + CTF++LL  ++ I G+ R+R+TTSHP + 
Sbjct: 172 VAQLAEQGVREVNLLGQNVNAFRGATHDDDICTFAELLRYIAAIDGIDRVRFTTSHPIEF 231

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
           S  +I  + D   L+ ++HLPVQSGSD IL  M R H A EY+ II R+R  RPDI ISS
Sbjct: 232 SQDIIDVYEDTPELVSFVHLPVQSGSDHILTQMKRGHMAIEYKSIIRRLRKARPDIQISS 291

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLC 393
           DFI+GFPGE+  DF  TM L++ + +  +FSF YS R GTP +++ + V    K ERL  
Sbjct: 292 DFIIGFPGESKQDFADTMKLIEDVAFDHSFSFIYSARPGTPAADLPDDVTLAEKKERLAI 351

Query: 394 LQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLNSKNHNIGDIIK 452
           LQ+++ +Q + ++   +G +  +L+E    K   +L GR+   + V  ++   +IG  + 
Sbjct: 352 LQERITQQAMRYSRQMLGTVQRILVEGPSVKNPMELRGRTETSRVVNFSADPKHIGSFVD 411

Query: 453 VRITDVKISTLYGELV 468
           V I DV  ++L G  V
Sbjct: 412 VEIVDVYANSLRGTFV 427


>gi|148653672|ref|YP_001280765.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Psychrobacter
           sp. PRwf-1]
 gi|229890621|sp|A5WGM4|MIAB_PSYWF RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|148572756|gb|ABQ94815.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Psychrobacter sp. PRwf-1]
          Length = 490

 Score =  357 bits (915), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 192/459 (41%), Positives = 291/459 (63%), Gaps = 24/459 (5%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ ++ + GCQMNVYDS +M ++   S      +++++AD++++NTC IREKA EKV+S 
Sbjct: 37  KKVYIATQGCQMNVYDSEKMGNVLGDSHDMVVTDNIEEADVLLMNTCSIREKAQEKVFSE 96

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR R LK    +E  DL++ V GCVA  EG+ I +R+P V++V GPQT +RLPEL +++
Sbjct: 97  LGRWRKLK----EEKPDLVIGVGGCVASQEGDNIQKRAPYVDMVFGPQTLHRLPELYDKS 152

Query: 144 RFGKRV--------VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
              + V        VD  +   +KF+ L        +  G  AF++I EGC K+C+FCVV
Sbjct: 153 TTQRNVKPKDRIGTVDVSFPSIEKFDFLP-----EPKVEGYRAFVSIMEGCSKYCSFCVV 207

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
           PYTRG E+SR L  V+ E   L + GV EITLLGQNVN +RG+  DG  C F++LL+ ++
Sbjct: 208 PYTRGEELSRPLDDVLAEIDSLAEQGVREITLLGQNVNGYRGEKDDGSICRFAELLHYVA 267

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
            + G+ R+RYTTSHP + +D +I+A+  L  L+ +LHLPVQSGS++IL +M R HT   Y
Sbjct: 268 HVDGIERIRYTTSHPLEFTDDIIEAYAKLPQLVSHLHLPVQSGSNKILAAMKRNHTIDVY 327

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
              I+++ +VRPD+ +SSDFI+GFPGET++DF  T++L   + +  ++SF YS R GTP 
Sbjct: 328 INQINKLMAVRPDMHLSSDFIIGFPGETEEDFLDTLNLAKALDFDHSYSFIYSKRPGTPA 387

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPW 434
           S + + V    K ERL   QK +R+  +   +  VG+ + V++E+   +   +L+G +  
Sbjct: 388 SELPDDVSLATKKERLAIFQKVIRDSTLKKTEEMVGKTLRVMVEEIADRYPDQLLGTADN 447

Query: 435 LQSVVLNS----KNHNIGDIIKVRITD-VKISTLYGELV 468
            +SV+  +    K   +G  + V+ITD V    + GELV
Sbjct: 448 TRSVLFKATEQQKTDLMGKFVTVKITDFVSPHMVRGELV 486


>gi|149928259|ref|ZP_01916503.1| hypothetical protein LMED105_15758 [Limnobacter sp. MED105]
 gi|149823065|gb|EDM82306.1| hypothetical protein LMED105_15758 [Limnobacter sp. MED105]
          Length = 404

 Score =  356 bits (914), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 186/410 (45%), Positives = 272/410 (66%), Gaps = 12/410 (2%)

Query: 63  DLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSP 122
           D+I+ NTC +REKA EKV+S LGR+++LK    K   +L++ V GCVA  EG+ I+ R+P
Sbjct: 1   DIILFNTCSVREKAQEKVFSDLGRVKHLK----KSNPNLIIGVGGCVASQEGKAIVDRAP 56

Query: 123 IVNVVVGPQTYYRLPELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLT 181
            V+VV GPQT +RLP+L+++ R   R  VD  +   +KF+ L +      +  G TAF++
Sbjct: 57  YVDVVFGPQTLHRLPQLIKQRRDTHRPQVDISFPEIEKFDNLPLA-----KNTGATAFVS 111

Query: 182 IQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-GL 240
           I EGC K+C+FCVVPYTRG EISR    V+ E   L D GV EI LLGQNVNA+RGK G 
Sbjct: 112 IMEGCSKYCSFCVVPYTRGEEISRPFDDVLVEIADLADQGVREINLLGQNVNAYRGKMGD 171

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300
             E   F+ LL  +SE+ G+ R+R+TTSHP++    LI+A+  L  L+ +LHLPVQ+GSD
Sbjct: 172 TSEIADFALLLEYVSEVPGIERIRFTTSHPKEFGPRLIQAYAKLPKLVDHLHLPVQAGSD 231

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
           RIL +M R +TA EY+ II ++R +RP+I++SSDFIVGFPGE++ DF  TMDL++ +G+ 
Sbjct: 232 RILSAMKRGYTALEYKSIIRKLREIRPNISMSSDFIVGFPGESEADFEKTMDLINAVGFD 291

Query: 361 QAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
            +FSF YSPR GTP +++ + VD+  K +RL  LQK +++   S + + VG   +VL+E 
Sbjct: 292 TSFSFVYSPRPGTPAADLEDGVDQVTKLKRLARLQKTIQDHATSISKSMVGTRQKVLVEG 351

Query: 421 HG-KEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
              K+  +L GR+   + V        +G I+++ I +   ++L G++ +
Sbjct: 352 PSRKDPAELAGRTENNRVVNFAGNARMVGQIVELDIVEAYPNSLRGQVPI 401


>gi|254467785|ref|ZP_05081191.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [beta proteobacterium
           KB13]
 gi|207086595|gb|EDZ63878.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [beta proteobacterium
           KB13]
          Length = 438

 Score =  356 bits (913), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 182/446 (40%), Positives = 280/446 (62%), Gaps = 12/446 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ F+K+YGCQMN YDS ++ ++      Y+  + ++DADL+VLNTC IREKA +KVY  
Sbjct: 3   KKIFIKTYGCQMNEYDSDQISNLMGKMDSYQSTDQVEDADLVVLNTCSIREKAEDKVYGQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-ER 142
           LGR+R LKN +      + + V GCVA  EGE I++R+P V++V GPQT +++P LL E 
Sbjct: 63  LGRLRELKNKK----PSMKIAVGGCVASQEGENIIKRAPYVDLVFGPQTLHKIPSLLKEN 118

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            R G   +D  +   +KF++L        +  G +++++I EGC K+C+FCVVPYTRG E
Sbjct: 119 ERVGSAQIDISFPAIEKFDQLPQA-----KSNGPSSYVSIMEGCSKYCSFCVVPYTRGEE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR    +++E  +L   GV E+ LLGQNVNA+R K   G +  F++L+  +SEI  + R
Sbjct: 174 VSRPAEDIIEEILRLTQQGVIELNLLGQNVNAYRYKDKKGFEYDFAELINLISEIDEINR 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP +M+D LI+   +   L  ++HLP+QSGSDRIL +M R +   EY+QII ++
Sbjct: 234 IRFTTSHPNEMNDTLIECFQNNHKLANFIHLPIQSGSDRILSAMKRNYLYLEYKQIIKKL 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           ++  P+I ISSDFIVGFPGETD D + T+  + +I +  ++SF YS R GTP S + +  
Sbjct: 294 KAASPNILISSDFIVGFPGETDQDHQQTIKAIKEIDFDYSYSFLYSARPGTPASYLKDST 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
           +E +K  RL  +Q  + EQ  +   A +     VLI++   E     G++   + V + +
Sbjct: 354 NEEIKKNRLQEIQNLINEQGKNHTHALMNSEQRVLIDEKVDEIT-FKGKTDNNRIVEIKT 412

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
           K   +  ++KV++T      + GEL+
Sbjct: 413 KQDILNQMVKVKVTKTTNRRISGELI 438


>gi|152969257|ref|YP_001334366.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
 gi|150954106|gb|ABR76136.1| hypothetical protein KPN_00686 [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
          Length = 453

 Score =  353 bits (907), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 184/422 (43%), Positives = 272/422 (64%), Gaps = 13/422 (3%)

Query: 50  SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCV 109
           + GY+     ++AD+++LNTC IREKA EKV+  LGR + LK    ++  DL++ V GCV
Sbjct: 8   THGYQLTEVAEEADVLLLNTCSIREKAQEKVFHQLGRWKLLK----EKNPDLIIGVGGCV 63

Query: 110 AQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR--VVDTDYSVEDKFERLSIVD 167
           A  EG+ I +R+  V+++ GPQT +RLPE++   R G R  VVD  +   +KF+RL    
Sbjct: 64  ASQEGDHIRQRAHYVDIIFGPQTLHRLPEMINSVR-GNRSPVVDISFPEIEKFDRLP--- 119

Query: 168 GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITL 227
               R  G TAF++I EGC+K+CT+CVVPYTRG E+SR    ++ E  +L   GV E+ L
Sbjct: 120 --EPRAEGPTAFVSIMEGCNKYCTYCVVPYTRGEEVSRPCDDILFEIAQLAAQGVREVNL 177

Query: 228 LGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL 287
           LGQNVNAWRG+  DG   +F+DLL  ++ I G+ R+R+TTSHP + +D +I  + D   L
Sbjct: 178 LGQNVNAWRGENYDGTTGSFADLLRLVAAIDGIDRIRFTTSHPIEFTDDIIDVYRDTPEL 237

Query: 288 MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDF 347
           + +LHLPVQSGSDR+L  M R HTA EY+ II ++R  RPDI ISSDFIVGFPGET +DF
Sbjct: 238 VSFLHLPVQSGSDRVLNLMGRTHTALEYKAIIRKLREARPDIQISSDFIVGFPGETTEDF 297

Query: 348 RATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFND 407
             TM L+  + +  ++SF +S R GTP ++M++ V E  K +RL  LQ+++ +Q ++++ 
Sbjct: 298 EKTMKLIADVNFDMSYSFIFSARPGTPAADMVDDVPEADKKQRLYILQERINQQAMAWSR 357

Query: 408 ACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGE 466
             +G +  +L+E   ++   +L GR+   + V        +G  + V I DV  ++L G+
Sbjct: 358 RMLGTVQRILVEGTSRKNIMELSGRTENNRVVNFEGTPDLVGKFVDVEIVDVYTNSLRGK 417

Query: 467 LV 468
           +V
Sbjct: 418 IV 419


>gi|27904873|ref|NP_777999.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Buchnera
           aphidicola str. Bp (Baizongia pistaciae)]
 gi|46397184|sp|Q89AC2|MIAB_BUCBP RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|27904271|gb|AAO27104.1| hypothetical protein bbp_392 [Buchnera aphidicola str. Bp
           (Baizongia pistaciae)]
          Length = 445

 Score =  353 bits (907), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 183/443 (41%), Positives = 280/443 (63%), Gaps = 12/443 (2%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQ-GYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + ++K++GCQMN YDS  +  +   + GYE       A++++LNTC IREKA EKV+  L
Sbjct: 5   KIYIKTWGCQMNEYDSALITQILKQKHGYENTKDPKLANVLILNTCSIREKAQEKVFHQL 64

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR + LK    ++  +L++ V GCVA  EG+ I +R+  V+++ G QT + LP +++  +
Sbjct: 65  GRWKKLK----QKNPNLIIAVGGCVATQEGKNIYKRANYVDIIFGTQTLHYLPNMIQEVK 120

Query: 145 FGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             K+ V + D+ + +KF  +      Y RK  VTAF++I EGC+KFC+FC+VPYTRG EI
Sbjct: 121 KNKKSVTNIDFPLTEKFNFIE-----YPRKPKVTAFVSIMEGCNKFCSFCIVPYTRGHEI 175

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR +  ++ E   L   GV EI LLGQNVN+++GK  +G+ C FS+LL  ++ I G+ R+
Sbjct: 176 SRPVDDILLEISTLSSRGVKEIHLLGQNVNSYKGKTFNGDICKFSNLLRLVASIDGIDRI 235

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+TTS+P + +D +I+ + ++  ++ +LHLPVQSGS+RIL+ M R HT  EY+ II++I 
Sbjct: 236 RFTTSNPFEFTDDIIEIYAEIPKIVSFLHLPVQSGSNRILQLMKRMHTIDEYKTIINKIL 295

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
            +RP+I ISSDFI+GFPGET  DF  T+ L+  +    ++SF YSPR GTP S + + V 
Sbjct: 296 KLRPNIQISSDFIIGFPGETLIDFEQTLQLIKDLNIDMSYSFIYSPRPGTPASELQDNVT 355

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVLNS 442
              K +RL  LQ  +R     +N   +G I  VL+E   ++  K L GR+   + V    
Sbjct: 356 LCEKQKRLHILQTLIRNNTTMWNQKMLGSIQSVLVEGRSQKNPKELFGRTENNRIVNFKG 415

Query: 443 KNHNIGDIIKVRITDVKISTLYG 465
             + IG+ I ++IT +  ++L G
Sbjct: 416 NQNMIGEFINLKITKINPNSLRG 438


>gi|320157147|ref|YP_004189526.1| tRNA-i(6)A37 methylthiotransferase [Vibrio vulnificus MO6-24/O]
 gi|319932459|gb|ADV87323.1| tRNA-i(6)A37 methylthiotransferase [Vibrio vulnificus MO6-24/O]
          Length = 461

 Score =  353 bits (905), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 193/436 (44%), Positives = 278/436 (63%), Gaps = 12/436 (2%)

Query: 36  MNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSR 94
           MN YDS +M D+   + GYE     ++AD+++LNTC IREKA EKV+  LGR + LK+ +
Sbjct: 1   MNEYDSSKMADLLNAANGYELTEEPEEADVLLLNTCSIREKAQEKVFHQLGRWKTLKDKK 60

Query: 95  IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF-GKRVVDTD 153
                 +++ V GCVA  EG+ I  R+P V+V+ GPQT +RLPE++++++     V+D  
Sbjct: 61  ----PGVVIGVGGCVATQEGDHIRERAPFVDVIFGPQTLHRLPEMIKQSQSEDAPVMDIS 116

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           +   +KF+ L        R  G TAF++I EGC K+CT+CVVPYTRG E+SR +  V+ E
Sbjct: 117 FPEIEKFDSLP-----EPRAEGATAFVSIMEGCSKYCTYCVVPYTRGEEVSRPMDDVLYE 171

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
             +L + GV E+ LLGQNVNA+RG   DGE C+F++LL  ++ I G+ R+R+TTSHP + 
Sbjct: 172 IAQLAEQGVREVNLLGQNVNAYRGPMHDGEICSFAELLRLVASIDGIDRIRFTTSHPLEF 231

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
           +D +I  + D   L+ +LHLPVQSGSDRIL  M R HT  EY+ II ++R  RPDI ISS
Sbjct: 232 TDDIIAVYEDTPELVSFLHLPVQSGSDRILTMMKRPHTGIEYKSIIRKLRKARPDIQISS 291

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLC 393
           DFIVGFPGE+D DF+ TM L+  + +  +FSF +SPR GTP ++    + E  K ERL  
Sbjct: 292 DFIVGFPGESDKDFQDTMKLIKDVDFDMSFSFIFSPRPGTPAADYPCDLSEETKKERLYE 351

Query: 394 LQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNSKNHNIGDIIK 452
           LQ+++  Q + ++   +G    VL+E   K+   +L  R+   + V        IG  + 
Sbjct: 352 LQQQINAQAMRYSRLMLGTEQRVLVEGPSKKNLMELRARTENNRVVNFEGSADLIGQFVD 411

Query: 453 VRITDVKISTLYGELV 468
           V+ITDV  ++L GE+V
Sbjct: 412 VKITDVFANSLRGEIV 427


>gi|115314702|ref|YP_763425.1| 2-methylthioadenine synthetase [Francisella tularensis subsp.
           holarctica OSU18]
 gi|156502304|ref|YP_001428369.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Francisella
           tularensis subsp. holarctica FTNF002-00]
 gi|254369234|ref|ZP_04985246.1| conserved hypothetical protein [Francisella tularensis subsp.
           holarctica FSC022]
 gi|122325275|sp|Q0BM96|MIAB_FRATO RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|229890539|sp|A7NBR0|MIAB_FRATF RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|115129601|gb|ABI82788.1| possible 2-methylthioadenine synthetase [Francisella tularensis
           subsp. holarctica OSU18]
 gi|156252907|gb|ABU61413.1| tRNA-I(6)A37 thiotransferase enzyme [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|157122184|gb|EDO66324.1| conserved hypothetical protein [Francisella tularensis subsp.
           holarctica FSC022]
          Length = 442

 Score =  353 bits (905), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 192/448 (42%), Positives = 283/448 (63%), Gaps = 14/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEKVYS 82
           ++ F+K+ GCQMN YDS RM ++  ++ ++ V + D  DAD+I++NTC IREKA EKV+ 
Sbjct: 5   KKVFIKTLGCQMNEYDSARMHEVL-NEHFDTVKTDDYKDADIILINTCSIREKAQEKVFH 63

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            LGR + LK    K   DL++ V GCVA  EGE I++R+P V++V GPQT +RLPE++++
Sbjct: 64  ELGRWKGLK----KTNEDLIIGVGGCVASQEGENIIKRAPFVDLVFGPQTIHRLPEMIKQ 119

Query: 143 ARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
            +  ++  VD  +   +KF+ L        +  G  A+++I EGCDK+C++CVVPYTRG 
Sbjct: 120 KQKSQQSQVDISFPEVEKFDYLP-----EPKAEGAKAYVSIMEGCDKYCSYCVVPYTRGP 174

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E++R    V+ E   L + GV EITLLGQNVN + G   +G+    + L++ ++EI G+ 
Sbjct: 175 EVNRPFEDVLAECAILAEQGVKEITLLGQNVNHYLGPMENGQTADLALLIHFIAEIDGIE 234

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHP + S  LI A+  +  L  +LHLPVQ GSDRIL +M R HT  E++Q I +
Sbjct: 235 RIRFTTSHPVEFSQNLIDAYATVPELANHLHLPVQHGSDRILINMKRNHTILEFKQKIRK 294

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R++RPDI ISSDFIVGFPGET++DF+  +DLV +I + Q+FSF YS R GTP +++ + 
Sbjct: 295 LRAIRPDITISSDFIVGFPGETEEDFQKLLDLVKEINFDQSFSFIYSKRPGTPAADLPDD 354

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440
               VK +RL  LQ  L       +   VG    +L++   K+    L GR+   + V  
Sbjct: 355 TPMEVKKDRLKRLQDLLNSNAQIISRQMVGTNQRILVDGTSKKDDNILSGRTENNRVVNF 414

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 IG    V+IT+   ++L GEL+
Sbjct: 415 KGDKSLIGQFAMVKITESLPNSLRGELI 442


>gi|56707743|ref|YP_169639.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Francisella
           tularensis subsp. tularensis SCHU S4]
 gi|110670214|ref|YP_666771.1| hypothetical protein FTF0618c [Francisella tularensis subsp.
           tularensis FSC198]
 gi|118497654|ref|YP_898704.1| tRNA-methylthiotransferase MiaB protein [Francisella tularensis
           subsp. novicida U112]
 gi|134302074|ref|YP_001122043.1| tRNA-thiotransferase enzyme MiaB [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|187931466|ref|YP_001891450.1| tRNA-methylthiotransferase MiaB protein [Francisella tularensis
           subsp. mediasiatica FSC147]
 gi|194323626|ref|ZP_03057402.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Francisella tularensis
           subsp. novicida FTE]
 gi|208779715|ref|ZP_03247059.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Francisella novicida FTG]
 gi|224456814|ref|ZP_03665287.1| tRNA-methylthiotransferase MiaB protein [Francisella tularensis
           subsp. tularensis MA00-2987]
 gi|254370246|ref|ZP_04986252.1| hypothetical protein [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254373019|ref|ZP_04988508.1| hypothetical protein FTCG_00593 [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|254374469|ref|ZP_04989950.1| hypothetical protein FTDG_00638 [Francisella novicida GA99-3548]
 gi|254874556|ref|ZP_05247266.1| tRNA-methylthiotransferase miaB [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|81597746|sp|Q5NH53|MIAB_FRATT RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|123169487|sp|Q14IK5|MIAB_FRAT1 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|229890540|sp|B2SG13|MIAB_FRATM RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|229890541|sp|A0Q6T5|MIAB_FRATN RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|229890542|sp|A4IYC1|MIAB_FRATW RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|56604235|emb|CAG45251.1| conserved hypothetical protein yleA [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110320547|emb|CAL08634.1| conserved hypothetical protein yleA [Francisella tularensis subsp.
           tularensis FSC198]
 gi|118423560|gb|ABK89950.1| tRNA-methylthiotransferase MiaB protein [Francisella novicida U112]
 gi|134049851|gb|ABO46922.1| tRNA-thiotransferase enzyme MiaB [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|151568490|gb|EDN34144.1| hypothetical protein FTBG_01371 [Francisella tularensis subsp.
           tularensis FSC033]
 gi|151570746|gb|EDN36400.1| hypothetical protein FTCG_00593 [Francisella novicida GA99-3549]
 gi|151572188|gb|EDN37842.1| hypothetical protein FTDG_00638 [Francisella novicida GA99-3548]
 gi|187712375|gb|ACD30672.1| tRNA-methylthiotransferase MiaB protein [Francisella tularensis
           subsp. mediasiatica FSC147]
 gi|194321990|gb|EDX19472.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Francisella tularensis
           subsp. novicida FTE]
 gi|208744170|gb|EDZ90470.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Francisella novicida FTG]
 gi|254840555|gb|EET18991.1| tRNA-methylthiotransferase miaB [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|282158914|gb|ADA78305.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Francisella tularensis
           subsp. tularensis NE061598]
          Length = 442

 Score =  353 bits (905), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 192/448 (42%), Positives = 283/448 (63%), Gaps = 14/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEKVYS 82
           ++ F+K+ GCQMN YDS RM ++  ++ ++ V + D  DAD+I++NTC IREKA EKV+ 
Sbjct: 5   KKVFIKTLGCQMNEYDSARMHEVL-NEHFDTVKTDDYKDADIILINTCSIREKAQEKVFH 63

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            LGR + LK    K   DL++ V GCVA  EGE I++R+P V++V GPQT +RLPE++++
Sbjct: 64  ELGRWKGLK----KTNEDLIIGVGGCVASQEGENIIKRAPFVDLVFGPQTIHRLPEMIKQ 119

Query: 143 ARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
            +  ++  VD  +   +KF+ L        +  G  A+++I EGCDK+C++CVVPYTRG 
Sbjct: 120 KQKTQQSQVDISFPEVEKFDYLP-----EPKAEGAKAYVSIMEGCDKYCSYCVVPYTRGP 174

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E++R    V+ E   L + GV EITLLGQNVN + G   +G+    + L++ ++EI G+ 
Sbjct: 175 EVNRPFEDVLAECAILAEQGVKEITLLGQNVNHYLGPMENGQTADLALLIHFIAEIDGIE 234

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHP + S  LI A+  +  L  +LHLPVQ GSDRIL +M R HT  E++Q I +
Sbjct: 235 RIRFTTSHPVEFSQNLIDAYATVPELANHLHLPVQHGSDRILINMKRNHTILEFKQKIRK 294

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R++RPDI ISSDFIVGFPGET++DF+  +DLV +I + Q+FSF YS R GTP +++ + 
Sbjct: 295 LRAIRPDITISSDFIVGFPGETEEDFQKLLDLVKEINFDQSFSFIYSKRPGTPAADLPDD 354

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440
               VK +RL  LQ  L       +   VG    +L++   K+    L GR+   + V  
Sbjct: 355 TPMEVKKDRLKRLQDLLNSNAQIISRQMVGTNQRILVDGTSKKDDNILSGRTENNRVVNF 414

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 IG    V+IT+   ++L GEL+
Sbjct: 415 KGDKSLIGQFAMVKITESLPNSLRGELI 442


>gi|328675997|gb|AEB28672.1| tRNA-i(6)A37 methylthiotransferase [Francisella cf. novicida 3523]
          Length = 442

 Score =  352 bits (904), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 192/448 (42%), Positives = 282/448 (62%), Gaps = 14/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEKVYS 82
           ++ F+K+ GCQMN YDS RM ++  ++ +  V + D  DAD+I++NTC IREKA EKV+ 
Sbjct: 5   KKVFIKTLGCQMNEYDSARMHEVL-NEHFHTVKTDDYKDADIILINTCSIREKAQEKVFH 63

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            LGR + LK    K   DL++ V GCVA  EGE I++R+P V++V GPQT +RLPE++++
Sbjct: 64  ELGRWKGLK----KTNEDLIIGVGGCVASQEGENIIKRAPFVDLVFGPQTIHRLPEMIKQ 119

Query: 143 ARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
            +  ++  VD  +   +KF+ L        +  G  A+++I EGCDK+C++CVVPYTRG 
Sbjct: 120 KQKTQQSQVDISFPEVEKFDYLP-----EPKAEGAKAYVSIMEGCDKYCSYCVVPYTRGP 174

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E++R    V+ E   L + GV EITLLGQNVN + G   +G+    + L++ ++EI G+ 
Sbjct: 175 EVNRPFEDVLAECAILAEQGVKEITLLGQNVNHYLGPMENGQTADLALLIHFIAEIDGIE 234

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHP + S  LI A+  +  L  +LHLPVQ GSDRIL +M R HT  E++Q I +
Sbjct: 235 RIRFTTSHPVEFSQNLIDAYATVPELANHLHLPVQHGSDRILINMKRNHTILEFKQKIRK 294

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R++RPDI ISSDFIVGFPGET++DF+  +DLV +I + Q+FSF YS R GTP +++ + 
Sbjct: 295 LRAIRPDITISSDFIVGFPGETEEDFQKLLDLVKEINFDQSFSFIYSKRPGTPAADLPDD 354

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440
               VK +RL  LQ  L       +   VG    +L++   K+    L GR+   + V  
Sbjct: 355 TPMEVKKDRLKRLQDLLNSNAQIISRQMVGTNQRILVDGTSKKDDNILSGRTENNRVVNF 414

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 IG    V+IT+   ++L GEL+
Sbjct: 415 KGDKSLIGQFAMVKITESLPNSLRGELI 442


>gi|57340162|gb|AAW50068.1| hypothetical protein FTT0618 [synthetic construct]
          Length = 477

 Score =  352 bits (904), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 192/448 (42%), Positives = 283/448 (63%), Gaps = 14/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEKVYS 82
           ++ F+K+ GCQMN YDS RM ++  ++ ++ V + D  DAD+I++NTC IREKA EKV+ 
Sbjct: 31  KKVFIKTLGCQMNEYDSARMHEVL-NEHFDTVKTDDYKDADIILINTCSIREKAQEKVFH 89

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            LGR + LK    K   DL++ V GCVA  EGE I++R+P V++V GPQT +RLPE++++
Sbjct: 90  ELGRWKGLK----KTNEDLIIGVGGCVASQEGENIIKRAPFVDLVFGPQTIHRLPEMIKQ 145

Query: 143 ARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
            +  ++  VD  +   +KF+ L        +  G  A+++I EGCDK+C++CVVPYTRG 
Sbjct: 146 KQKTQQSQVDISFPEVEKFDYLP-----EPKAEGAKAYVSIMEGCDKYCSYCVVPYTRGP 200

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E++R    V+ E   L + GV EITLLGQNVN + G   +G+    + L++ ++EI G+ 
Sbjct: 201 EVNRPFEDVLAECAILAEQGVKEITLLGQNVNHYLGPMENGQTADLALLIHFIAEIDGIE 260

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHP + S  LI A+  +  L  +LHLPVQ GSDRIL +M R HT  E++Q I +
Sbjct: 261 RIRFTTSHPVEFSQNLIDAYATVPELANHLHLPVQHGSDRILINMKRNHTILEFKQKIRK 320

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R++RPDI ISSDFIVGFPGET++DF+  +DLV +I + Q+FSF YS R GTP +++ + 
Sbjct: 321 LRAIRPDITISSDFIVGFPGETEEDFQKLLDLVKEINFDQSFSFIYSKRPGTPAADLPDD 380

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440
               VK +RL  LQ  L       +   VG    +L++   K+    L GR+   + V  
Sbjct: 381 TPMEVKKDRLKRLQDLLNSNAQIISRQMVGTNQRILVDGTSKKDDNILSGRTENNRVVNF 440

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 IG    V+IT+   ++L GEL+
Sbjct: 441 KGDKSLIGQFAMVKITESLPNSLRGELI 468


>gi|89256244|ref|YP_513606.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Francisella
           tularensis subsp. holarctica LVS]
 gi|167010861|ref|ZP_02275792.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Francisella tularensis
           subsp. holarctica FSC200]
 gi|254367560|ref|ZP_04983586.1| conserved hypothetical protein yleA [Francisella tularensis subsp.
           holarctica 257]
 gi|123287306|sp|Q2A3U6|MIAB_FRATH RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|89144075|emb|CAJ79325.1| conserved hypothetical protein yleA [Francisella tularensis subsp.
           holarctica LVS]
 gi|134253376|gb|EBA52470.1| conserved hypothetical protein yleA [Francisella tularensis subsp.
           holarctica 257]
          Length = 442

 Score =  352 bits (903), Expect = 7e-95,   Method: Compositional matrix adjust.
 Identities = 191/448 (42%), Positives = 283/448 (63%), Gaps = 14/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEKVYS 82
           ++ F+K+ GCQMN YDS RM ++  ++ ++ V + D  DAD+I++NTC IREKA EKV+ 
Sbjct: 5   KKVFIKTLGCQMNEYDSARMHEVL-NEHFDTVKTDDYKDADIILINTCSIREKAQEKVFH 63

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            LGR + +K    K   DL++ V GCVA  EGE I++R+P V++V GPQT +RLPE++++
Sbjct: 64  ELGRWKGIK----KTNEDLIIGVGGCVASQEGENIIKRAPFVDLVFGPQTIHRLPEMIKQ 119

Query: 143 ARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
            +  ++  VD  +   +KF+ L        +  G  A+++I EGCDK+C++CVVPYTRG 
Sbjct: 120 KQKSQQSQVDISFPEVEKFDYLP-----EPKAEGAKAYVSIMEGCDKYCSYCVVPYTRGP 174

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E++R    V+ E   L + GV EITLLGQNVN + G   +G+    + L++ ++EI G+ 
Sbjct: 175 EVNRPFEDVLAECAILAEQGVKEITLLGQNVNHYLGPMENGQTADLALLIHFIAEIDGIE 234

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHP + S  LI A+  +  L  +LHLPVQ GSDRIL +M R HT  E++Q I +
Sbjct: 235 RIRFTTSHPVEFSQNLIDAYATVPELANHLHLPVQHGSDRILINMKRNHTILEFKQKIRK 294

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R++RPDI ISSDFIVGFPGET++DF+  +DLV +I + Q+FSF YS R GTP +++ + 
Sbjct: 295 LRAIRPDITISSDFIVGFPGETEEDFQKLLDLVKEINFDQSFSFIYSKRPGTPAADLPDD 354

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440
               VK +RL  LQ  L       +   VG    +L++   K+    L GR+   + V  
Sbjct: 355 TPMEVKKDRLKRLQDLLNSNAQIISRQMVGTNQRILVDGTSKKDDNILSGRTENNRVVNF 414

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 IG    V+IT+   ++L GEL+
Sbjct: 415 KGDKSLIGQFAMVKITESLPNSLRGELI 442


>gi|254509287|ref|ZP_05121379.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Vibrio parahaemolyticus
           16]
 gi|219547775|gb|EED24808.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Vibrio parahaemolyticus
           16]
          Length = 461

 Score =  352 bits (903), Expect = 7e-95,   Method: Compositional matrix adjust.
 Identities = 196/436 (44%), Positives = 278/436 (63%), Gaps = 12/436 (2%)

Query: 36  MNVYDSLRMED-MFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSR 94
           MN YDS +M D M  + GYE     ++AD+++LNTC IREKA EKV+  LGR + LK+ +
Sbjct: 1   MNEYDSSKMADLMNAANGYELTEEPEEADVLLLNTCSIREKAQEKVFHQLGRWKTLKDKK 60

Query: 95  IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR-VVDTD 153
                 +++ V GCVA  EG+ I  R+P V+V+ GPQT +RLPE++++++  +  V+D  
Sbjct: 61  ----PGVVIGVGGCVATQEGDHIRERAPFVDVIFGPQTLHRLPEMIKQSQSDEAPVMDIS 116

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           +   +KF+RL        R  G TAF++I EGC K+CT+CVVPYTRG E+SR +  V+ E
Sbjct: 117 FPEIEKFDRLP-----EPRAEGATAFVSIMEGCSKYCTYCVVPYTRGEEVSRPMDDVLFE 171

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
             +L + GV E+ LLGQNVNA+RG   DG+ C+F++LL  ++ I G+ R+R+TTSHP + 
Sbjct: 172 IAQLAEQGVREVNLLGQNVNAYRGPMHDGDICSFAELLRLVASIDGIDRIRFTTSHPLEF 231

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
           +D +I  + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II ++R  RPDI ISS
Sbjct: 232 TDDIIAVYEDTPELVSFLHLPVQSGSDRILTMMKRPHTAIEYKSIIRKLRKARPDIQISS 291

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLC 393
           DFIVGFPGET  D + TM L+  + +  +FSF +SPR GTP ++    V E  K ERL  
Sbjct: 292 DFIVGFPGETAKDHQDTMKLIKDVDFDMSFSFIFSPRPGTPAADYPCDVPEQEKKERLYE 351

Query: 394 LQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNSKNHNIGDIIK 452
           LQ+ +  Q + ++   +G    VL+E   K+   +L  R+   + V        IG  + 
Sbjct: 352 LQQTINAQAMRYSRLMLGTEQRVLVEGPSKKNLMELRARTENNRVVNFEGSADLIGQFVD 411

Query: 453 VRITDVKISTLYGELV 468
           V+ITDV  ++L GELV
Sbjct: 412 VKITDVFANSLRGELV 427


>gi|291279773|ref|YP_003496608.1| tRNA-i(6)A37 thiotransferase enzyme [Deferribacter desulfuricans
           SSM1]
 gi|290754475|dbj|BAI80852.1| tRNA-i(6)A37 thiotransferase enzyme [Deferribacter desulfuricans
           SSM1]
          Length = 439

 Score =  351 bits (900), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 192/448 (42%), Positives = 287/448 (64%), Gaps = 20/448 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + F+K++GCQMN YDS R+  +F  +GY   +++++A   V+NTC +REK   KV S LG
Sbjct: 2   KLFIKTFGCQMNEYDSERIAAIFQERGYSLTDNLEEASFAVINTCSVREKPYHKVESELG 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R++  K    K   D  + V GCVAQ +GE+ L R   V++V G     RL  L++    
Sbjct: 62  RLKKFK----KLNPDFKIAVCGCVAQQDGEKFLDRFDYVDLVFGTSAIDRLHSLIDLVEK 117

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G+R+ DT    ++    LSI    + R + V+AF+TI +GCD FC++C+VPY RG E SR
Sbjct: 118 GERICDTSEGDDE----LSI--PVFGRGKKVSAFVTIMKGCDNFCSYCIVPYVRGREKSR 171

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
             S+++DE + L++NGV E+TLLGQNVN++ GKGLD E   F  LLY + +I GL R+R+
Sbjct: 172 KPSEILDEIKYLVNNGVKEVTLLGQNVNSY-GKGLD-EDINFPKLLYKVHDINGLERIRF 229

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
            TSHP+D  D LI A  DL  +  YLHLP+Q+GS+++LK MNR++T  EYR  + + + +
Sbjct: 230 VTSHPKDFDDELIFAIRDLPKVCEYLHLPLQAGSNKVLKMMNRKYTYEEYRDKVLKAKEM 289

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            PD+A+SSDFIVGFPGET +DF  T+  + +I Y   F+FKYSPR  T  SN ++ + ++
Sbjct: 290 IPDLALSSDFIVGFPGETVEDFAETLKAIKEIRYESIFAFKYSPRPKTKASNFVDDITDD 349

Query: 386 VKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSPWLQSV-VL 440
            K+ R   LL +Q K+ E+    N + VG++ E+L+E K  K + +  GR+   + V +L
Sbjct: 350 EKSRRLNELLSIQSKITEE---INKSYVGKVQEILVEGKSKKGENQFSGRNRQNKVVNIL 406

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
           ++   NIGDI+ V I + K ++L  ++V
Sbjct: 407 SNHKLNIGDIVTVEIVEAKKNSLLAKIV 434


>gi|124514759|gb|EAY56271.1| TRNA-i(6)A37 modification enzyme (MiaB) [Leptospirillum rubarum]
          Length = 468

 Score =  351 bits (900), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 193/447 (43%), Positives = 274/447 (61%), Gaps = 16/447 (3%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           F++K++GCQMNV+DS RM  +  ++G   V+    AD+I++NTC IR+KA +K  S LGR
Sbjct: 30  FYIKTFGCQMNVHDSERMAGLLTAEGGNPVSEPAAADIILVNTCTIRDKADQKALSDLGR 89

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           IR ++    KEG   ++ V GC+AQ EGEEI R  P V++++GP     L  LL+ A   
Sbjct: 90  IRQVR----KEGPGTILAVTGCMAQREGEEIFRLVPDVDLILGPSQIRNLIPLLDAASTS 145

Query: 147 KRVVD-TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           +  VD T + V +     +I      R  GVTAF+T+QEGCDK C +CVVP TRG E SR
Sbjct: 146 RARVDGTLWPVPEMTTPPAI------RPPGVTAFVTVQEGCDKACAYCVVPATRGAERSR 199

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            ++ +V E   L+ +G  EITLLGQNVN +  KG D    +F +LL  LS+I GL+RLR+
Sbjct: 200 PVTDIVREVENLVSSGFREITLLGQNVNGYGQKG-DTAGASFPELLQRLSDIPGLLRLRF 258

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
           TTSHP DMS+ LI        +MP+LHLPVQSGSDR+L+ M R ++  +YR+ I+++R  
Sbjct: 259 TTSHPMDMSEDLIDVMATSSRVMPHLHLPVQSGSDRMLERMQRGYSLDDYRRWIEKLRKK 318

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P+ A+++D IVGF GET++DF  T+  V++  +  AF+F YSPR  TP  +  +     
Sbjct: 319 VPEAALTTDLIVGFCGETEEDFEKTLAAVEEFRFDGAFAFIYSPRPSTPAHSWEDVPPRE 378

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQS----VVLN 441
           +  ERL  LQKK+ +Q +  N + VG  +E+L EK   E    VGR+P  Q+    V   
Sbjct: 379 MSVERLERLQKKVEQQAMERNQSLVGSRVEILTEKWDPETRTAVGRTPQFQTVRALVAPE 438

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
             + + GD++ V IT    + L G  V
Sbjct: 439 RPDPSPGDLLWVTITQGARAGLKGNAV 465


>gi|171464142|ref|YP_001798255.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Polynucleobacter
           necessarius subsp. necessarius STIR1]
 gi|229890593|sp|B1XS06|MIAB_POLNS RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|171193680|gb|ACB44641.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Polynucleobacter
           necessarius subsp. necessarius STIR1]
          Length = 448

 Score =  350 bits (897), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 189/451 (41%), Positives = 284/451 (62%), Gaps = 16/451 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ ++K++GCQMN YDS +M D+  + +G    +  +DAD+++LNTC IREKA +KV+S 
Sbjct: 2   KKLYIKTFGCQMNEYDSGKMADLLHADEGMVMTDRPEDADVVLLNTCSIREKAEDKVFSD 61

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR+R LK ++     +LL+ V GCVA  EG++I+  +P V+VV GPQT +RL +L+ + 
Sbjct: 62  LGRLRELKKTK----PNLLIGVGGCVASQEGQQIVSHAPYVDVVFGPQTLHRLSDLIAKR 117

Query: 144 R-FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           R  G   VD  +   +KF+ L       +R+   +A+++I EGC K+C++CVVPYTRG E
Sbjct: 118 RETGLFQVDISFPEIEKFDHLPA-----SRQTRGSAYVSIMEGCSKYCSYCVVPYTRGEE 172

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-GLDGEKCTFSDLLYSLSEIKGLV 261
           +SRS   V+ E   L   GV EI LLGQNVNA+ GK G   E   F+ L+  + EI G+ 
Sbjct: 173 VSRSFDDVLTEVAGLASKGVKEIVLLGQNVNAYLGKMGDRQEIADFALLIEYIVEIPGVE 232

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHP++ +  LI  +  +  L+ +LHLPVQ GSD +L +M R +TA E++ II +
Sbjct: 233 RIRFTTSHPKEFTQRLIDVYTKVPKLVSHLHLPVQHGSDAMLSAMKRGYTALEFKSIIRK 292

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R+VRPD+ +SSDFIVGFPGET+ DF   + +V+++ +  +F F +SPR GTP +N+ + 
Sbjct: 293 MRAVRPDLTLSSDFIVGFPGETEADFEKLLKMVEELNFDNSFCFIFSPRPGTPAANLHDD 352

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
               VK +RL  L   +  Q    +   +G I  VLIE   K+   L GR+   + +   
Sbjct: 353 TPYEVKLKRLQTLLALVESQANQISQKMLGNIERVLIEGLAKDGINLQGRAENNRVIHFT 412

Query: 442 SKNHN----IGDIIKVRITDVKISTLYGELV 468
           +   N    IG ++ +RIT+V   TL G+LV
Sbjct: 413 APAQNIENLIGQMVDIRITEVLNYTLRGKLV 443


>gi|21672691|ref|NP_660758.1| hypothetical protein BUsg426 [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
 gi|25091587|sp|Q8K9C2|MIAB_BUCAP RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|21623331|gb|AAM67969.1| hypothetical 53.7 kDa protein [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
          Length = 439

 Score =  350 bits (897), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 186/447 (41%), Positives = 283/447 (63%), Gaps = 18/447 (4%)

Query: 28  FVKSYGCQMNVYDSLRMEDMFFSQG-YERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           ++K++GCQMN YDS  +       G Y     ++ AD+++LNTC IREKA EKV+  LGR
Sbjct: 5   YIKTWGCQMNEYDSSMITVFLEKTGRYLITKEVEKADILILNTCSIREKAQEKVFHQLGR 64

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
            + LKN +     D+++ V GCVA  EG+EI +R+  V++V G QT ++L +++++    
Sbjct: 65  WKKLKNKK----PDVIIAVGGCVATQEGKEIFKRANYVDIVFGTQTLHKLAQMIDKVEKN 120

Query: 147 KR-VVDTDYSVEDKFERLSIVDGGYN---RKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           +R ++D  +   +KF         Y+   +K G TA ++I EGC+K+C+FCVVPYTRG E
Sbjct: 121 RRFMIDISFPQLEKF--------NYSLEPKKTGYTASISIMEGCNKYCSFCVVPYTRGHE 172

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           ISR    ++ E   L +NGV EI LLGQNVNA+RG+  +G+ C FS+LL  +SEI G+ R
Sbjct: 173 ISRPSDDILLEISILAENGVREINLLGQNVNAYRGRTFNGKICFFSELLRLVSEIDGIDR 232

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTS+P + +D +I+ + D   L+ +LHLPVQSGS+RIL+ M R +T  EY +II+++
Sbjct: 233 IRFTTSNPLEFTDDIIEVYQDTPKLVSFLHLPVQSGSNRILQLMKRSYTTEEYEKIIEKL 292

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
              R +I ISSDFIVGFP E+++DF+ T++ + KI +  +FSF YS R GTP S M + +
Sbjct: 293 ILARSNIQISSDFIVGFPSESEEDFQKTINFIKKINFDMSFSFIYSSRPGTPASEMKDNI 352

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441
           D   K +RL  LQ  + +Q +S++   +     VL+E   K+   +L G++   + V   
Sbjct: 353 DLQEKKKRLYTLQNCINKQTMSWSRKMLKSTQSVLVEGVSKKNIMELYGKTENNRIVTFK 412

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
             +  IG  IK++I  V   +L GEL+
Sbjct: 413 GSHKMIGKFIKLKIKKVHTHSLQGELI 439


>gi|206602446|gb|EDZ38927.1| tRNA-i(6)A37 modification enzyme (MiaB) [Leptospirillum sp. Group
           II '5-way CG']
          Length = 468

 Score =  349 bits (896), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 193/447 (43%), Positives = 273/447 (61%), Gaps = 16/447 (3%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           F++K++GCQMNV+DS RM  +  S+G + V+    AD+I++NTC IR+KA +K  S LGR
Sbjct: 30  FYIKTFGCQMNVHDSERMAGLLASEGGKPVSEPAAADIILVNTCTIRDKADQKALSDLGR 89

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           IR ++    KEG   ++ V GC+AQ EGEEI R  P V++++GP     L  LL+ A   
Sbjct: 90  IRQVR----KEGPGTILAVTGCMAQREGEEIFRLVPDVDLILGPSQIRNLIPLLDAASTP 145

Query: 147 KRVVD-TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           +  VD T + V +     ++      R  GV+AF+T+QEGCDK C +CVVP TRG E SR
Sbjct: 146 RARVDGTLWPVPEMTTPPAL------RPPGVSAFVTVQEGCDKACAYCVVPATRGPERSR 199

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            ++ ++ EA  L+  G  EITLLGQNVN +  KG D    +F +LL  LS+I GL+R+R+
Sbjct: 200 PVADILREAEDLVSMGFREITLLGQNVNGYGQKG-DTAGASFPELLQRLSDIPGLLRIRF 258

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
           TTSHP DMSD LI        +MP+LHLPVQSGSDR+L+ M R +T  +YR+ I+++R  
Sbjct: 259 TTSHPMDMSDALINVMATSSRVMPHLHLPVQSGSDRMLERMQRGYTLDDYRRWIEKLRKK 318

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P+ A+++D IVGF GET++DF  T+  V++  +  AF+F YSPR  TP  +  +     
Sbjct: 319 VPEAALTTDLIVGFCGETEEDFEKTLAAVEEFRFDGAFAFIYSPRPSTPAHSWEDIPPRE 378

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQS----VVLN 441
           V  ERL  LQKK+ +Q +  N   VG  +E+L EK   E    VGR+P   +    V   
Sbjct: 379 VSVERLERLQKKVEQQAMERNQGLVGSRVEILTEKWDPETRTAVGRTPQFLTVRALVAPE 438

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
             + + GD++ V IT    + L G  V
Sbjct: 439 RPDPSPGDLLFVTITQGARAGLKGNAV 465


>gi|149378505|ref|ZP_01896181.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Marinobacter algicola
           DG893]
 gi|149357211|gb|EDM45757.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Marinobacter algicola
           DG893]
          Length = 417

 Score =  349 bits (896), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 186/419 (44%), Positives = 270/419 (64%), Gaps = 18/419 (4%)

Query: 54  ERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAE 113
           E  ++ DDAD+++LNTC IREKA EKV+  LGR + LKNS+     DL++ V GCVA  E
Sbjct: 2   EMTDTPDDADILLLNTCSIREKAQEKVFHQLGRWKKLKNSK----PDLIIGVGGCVASQE 57

Query: 114 GEEILRRSPIVNVVVGPQTYYRLPELLERARF---GKRVVDTDYSVEDKFERLSIVDGGY 170
           G+ I+ R+P V++V GPQT +RLP+++   R    G  VVD  +   +KF+ L   D G 
Sbjct: 58  GQAIIDRAPYVDMVFGPQTLHRLPDMITEVRAKGNGVGVVDVSFPEIEKFDNLP--DPGA 115

Query: 171 NRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQ 230
           +   G +AF++I EGC K+CTFCVVPYTRG E+SR +  V+ E   L   GV E+ LLGQ
Sbjct: 116 D---GPSAFVSIMEGCSKYCTFCVVPYTRGEEVSRPVDDVIAEVAHLASQGVREVNLLGQ 172

Query: 231 NVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY 290
           NVNA+RG+  DG+    ++L+  ++ I G+ R+RYTTSHP + SD LI+A+  +  L+ +
Sbjct: 173 NVNAYRGETHDGDVMDMAELVTLIATIDGIDRIRYTTSHPVEFSDSLIEAYEQVPELVSH 232

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
           LHLPVQSGSDR+L +M R HTA EY+  + R+R +RPDI+ SSDFI+GFPGET+ DF+ T
Sbjct: 233 LHLPVQSGSDRVLAAMKRGHTALEYKSKLRRLRKIRPDISFSSDFIIGFPGETEKDFQDT 292

Query: 351 MDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACV 410
           M L++ IG+  +FSF YS R GTP +++ +     VK +RL  LQ +L +  +  +   V
Sbjct: 293 MKLINDIGFDMSFSFIYSARPGTPAADLPDDTPLEVKKQRLSILQDRLNQNVMDISRKMV 352

Query: 411 GQIIEVLIEK-HGKEKGKLVGRSPWLQSVVLNSKNHN---IGDIIKVRITDVKISTLYG 465
           G    +L+     K+ G+  GR+    + ++N ++ N   +G  I V I +   ++L G
Sbjct: 353 GSTQRILVTGLSKKDPGEYAGRTE--NNRIVNFRHENPEVVGHFIDVEIREALPNSLRG 409


>gi|87119366|ref|ZP_01075264.1| hypothetical protein MED121_13890 [Marinomonas sp. MED121]
 gi|86165757|gb|EAQ67024.1| hypothetical protein MED121_13890 [Marinomonas sp. MED121]
          Length = 438

 Score =  349 bits (896), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 179/436 (41%), Positives = 281/436 (64%), Gaps = 12/436 (2%)

Query: 36  MNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSR 94
           MN YDS RM D+   S   E  ++ ++AD+++LNTC IREKA +KVY  LGR + LK+  
Sbjct: 1   MNEYDSSRMADLLGDSHEMELTDNAEEADVLLLNTCSIREKAQDKVYHQLGRWKKLKD-- 58

Query: 95  IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDY 154
             +  DL + V GCVA  EG+ I +R+  V+++ GPQT ++LPE+++ A     + D  +
Sbjct: 59  --KNPDLKIGVGGCVASQEGDSIRKRAKHVDMIFGPQTLHKLPEMVDAAANSIPITDVTF 116

Query: 155 SVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEA 214
              +KF+ L        +  G  AF++I EGC K+CTFCVVPYTRG E+SR  + ++ E 
Sbjct: 117 PEIEKFDHLPAP-----KVEGAEAFVSIMEGCSKYCTFCVVPYTRGEEVSRPFTDILVEV 171

Query: 215 RKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMS 274
            +L + GV EI LLGQNVNA+RG   +G +   +D++ ++++I G+ R+R+TTSHP + +
Sbjct: 172 MQLAEQGVREIHLLGQNVNAYRGVDNEGTESDLADVISAIAQIDGVERIRFTTSHPVEFT 231

Query: 275 DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSD 334
           D LI+A  ++  L+ +LHLPVQSG+D ILK+M R H    Y   I+RI+  RP I++SSD
Sbjct: 232 DSLIEAFRNIPKLVSHLHLPVQSGADNILKAMKRGHDRQSYIDKINRIKEARPGISLSSD 291

Query: 335 FIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCL 394
           FI+GFPGETD DF  TM+L+ +IG+  +FSF YS R GTP S++ + + E+VK +RL  L
Sbjct: 292 FIIGFPGETDQDFMDTMNLIQEIGFDHSFSFIYSQRPGTPASDLEDNISEDVKKQRLAIL 351

Query: 395 QKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLNS-KNHNIGDIIK 452
           Q+++++    ++ A +G    +L+  +  ++ G++ GR+   + V  ++ +   +G    
Sbjct: 352 QRRIKQHAYDYSQAMIGSTQRILVSGYSPRDPGQMQGRTENNRIVNFSAVEPQLVGKFAD 411

Query: 453 VRITDVKISTLYGELV 468
           V IT+   ++L GE++
Sbjct: 412 VIITNAYPNSLLGEMI 427


>gi|258627068|ref|ZP_05721864.1| conserved hypothetical protein [Vibrio mimicus VM603]
 gi|258580586|gb|EEW05539.1| conserved hypothetical protein [Vibrio mimicus VM603]
          Length = 453

 Score =  349 bits (896), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 190/421 (45%), Positives = 273/421 (64%), Gaps = 11/421 (2%)

Query: 50  SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCV 109
           + GYE     ++AD+++LNTC IREKA EKV+  LGR + LK+ +      +++ V GCV
Sbjct: 8   ANGYELTEIPEEADVLLLNTCSIREKAQEKVFHQLGRWKTLKDKK----PGVVIGVGGCV 63

Query: 110 AQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR-VVDTDYSVEDKFERLSIVDG 168
           A  EG+ I  R+P V+V+ GPQT +RLPE++++++  +  V+D  +   +KF+RL     
Sbjct: 64  ATQEGDSIRDRAPYVDVIFGPQTLHRLPEMIKQSQISEAPVMDISFPEIEKFDRLP---- 119

Query: 169 GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLL 228
              R  G TAF++I EGC K+CT+CVVPYTRG E+SR +  V+ E  +L + GV E+ LL
Sbjct: 120 -EPRAEGPTAFVSIMEGCSKYCTYCVVPYTRGEEVSRPMDDVLFEIAQLAEQGVREVNLL 178

Query: 229 GQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLM 288
           GQNVNA+RG   DGE C+F++LL  ++ I G+ R+R+TTSHP + +D +I  + D   L+
Sbjct: 179 GQNVNAYRGATHDGEICSFAELLRLVATIDGIDRIRFTTSHPLEFTDDIIAVYEDTPELV 238

Query: 289 PYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFR 348
            +LHLPVQSGSDRIL  M R HTA EY+ II ++R  RPDI ISSDFIVGFPGETD DF+
Sbjct: 239 SFLHLPVQSGSDRILTMMKRPHTAIEYKSIIRKLRKARPDIQISSDFIVGFPGETDKDFQ 298

Query: 349 ATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDA 408
            TM L+  + +  +FSF +SPR GTP ++    + E VK ERL  LQ+++  Q + ++  
Sbjct: 299 DTMKLIRDVDFDMSFSFIFSPRPGTPAADYPCDLSEEVKKERLYELQQQINSQAMRYSRL 358

Query: 409 CVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
            +G    +L+E   K+   +L GR+   + V        IG  + V+I DV  ++L GEL
Sbjct: 359 MLGTEQRILVEGPSKKDLMELRGRTENNRVVNFEGSPELIGQFVDVKIVDVFANSLRGEL 418

Query: 468 V 468
           V
Sbjct: 419 V 419


>gi|332970480|gb|EGK09470.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Psychrobacter sp.
           1501(2011)]
          Length = 528

 Score =  349 bits (895), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 190/459 (41%), Positives = 288/459 (62%), Gaps = 24/459 (5%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ ++ + GCQMNVYDS +M ++   S      N++++AD++++NTC IREKA EKV+S 
Sbjct: 75  KKVYIATQGCQMNVYDSEKMGNVLGDSHDMIVTNNIEEADVLLMNTCSIREKAQEKVFSE 134

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR R LK    ++  DL++ V GCVA  EG+ I +R+P V++V GPQT +RLPEL +++
Sbjct: 135 LGRWRKLK----EDNPDLVIGVGGCVASQEGDNIQKRAPYVDMVFGPQTLHRLPELYDQS 190

Query: 144 RFGKRV--------VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
              K V        VD  +   +KF+ L        +  G  AF++I EGC K+C+FCVV
Sbjct: 191 TRQKDVKPKDRIGTVDVSFPSIEKFDFLP-----EPKVEGYRAFVSIMEGCSKYCSFCVV 245

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
           PYTRG E+SR L  V+ E   L + GV EITLLGQNVN +RG+  DG  C F++LL+ ++
Sbjct: 246 PYTRGEELSRPLDDVLAEIDSLAEQGVREITLLGQNVNGYRGQKDDGSICRFAELLHYVA 305

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
            + G+ R+RYTTSHP + +D +I+A+  L  L+ +LHLPVQSGS++IL +M R HT   Y
Sbjct: 306 HVDGIERIRYTTSHPLEFTDDIIEAYEKLPQLVSHLHLPVQSGSNKILAAMKRNHTIDVY 365

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
              I ++ +VRPD+ +SSDFI+GFPGET++DF  T++L  ++ +  ++SF YS R GTP 
Sbjct: 366 INQIRKLMAVRPDMHLSSDFIIGFPGETEEDFLETLNLAKELDFDHSYSFIYSKRPGTPA 425

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPW 434
           + + + V    K ERL   QK + +  +      VG+ + V++E+   +   +L+G +  
Sbjct: 426 AELPDDVSLATKKERLAIFQKVIVDSTLKKTQEMVGKTLRVMVEEIADRYPDQLLGTADN 485

Query: 435 LQSVVLNS----KNHNIGDIIKVRITD-VKISTLYGELV 468
            +SV+  +    K   +G  + V+I D V    + GELV
Sbjct: 486 TRSVLFTATEEQKKELMGKFVTVKINDYVSPHMVRGELV 524


>gi|329897206|ref|ZP_08271946.1| tRNA-i(6)A37 methylthiotransferase [gamma proteobacterium IMCC3088]
 gi|328921361|gb|EGG28755.1| tRNA-i(6)A37 methylthiotransferase [gamma proteobacterium IMCC3088]
          Length = 434

 Score =  348 bits (893), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 192/440 (43%), Positives = 278/440 (63%), Gaps = 16/440 (3%)

Query: 36  MNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSR 94
           MN YDS R+ D+   S   ER ++ ++AD+++LNTC IREKA EKV+  LGR + LK   
Sbjct: 1   MNEYDSARIGDLLKTSHQLERTDNPEEADVLLLNTCSIREKAQEKVFHQLGRWKPLK--- 57

Query: 95  IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-ERARFGKR---VV 150
            ++  +L++ V GCVA  EG  I  R+P V++V GPQT +RLPE++ ER++ G     VV
Sbjct: 58  -EKNPNLIIGVGGCVASQEGAAIGERAPYVDLVFGPQTLHRLPEMMAERSQQGPGNTIVV 116

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
           D  +   +KF+ L   +      +G +AF++I EGC K+C+FCVVPYTRG E+SR L  V
Sbjct: 117 DVSFPEIEKFDCLPDPE-----IKGASAFVSIMEGCSKYCSFCVVPYTRGEEVSRPLDDV 171

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270
           + E     ++GV E+ LLGQNVNA+RG    GE   F++LL  ++ I  + R+RYTTSHP
Sbjct: 172 IAEVAHAAEHGVKEVNLLGQNVNAYRGLNYLGEVVDFAELLTYIARIPAIERIRYTTSHP 231

Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330
            + S  LI  + ++  L+ +LHLPVQSGSDRIL +M R HTA EY+  I  +R +RP+I+
Sbjct: 232 VEFSQALIDVYAEIPQLVDHLHLPVQSGSDRILAAMKRGHTALEYKSKIRALRKIRPNIS 291

Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER 390
           +SSDFIVGFPGETD DF ATM L++ IGY  +FSF YS R GTP +++++     VK +R
Sbjct: 292 MSSDFIVGFPGETDADFNATMKLIEDIGYDSSFSFIYSARPGTPAADLVDDTPMEVKKQR 351

Query: 391 LLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSVVLNSKNHN-IG 448
           L  LQ ++  Q    ++  VG    +L+     K+ G+L GR+   + V  +  +H  I 
Sbjct: 352 LQILQARIAGQARIISENMVGTRQRILVSGVSKKDPGQLQGRTENNRVVNFSCTDHGLIN 411

Query: 449 DIIKVRITDVKISTLYGELV 468
           +   V + +   ++L G L+
Sbjct: 412 EFAWVTVDEALPNSLRGTLL 431


>gi|258621980|ref|ZP_05717009.1| conserved hypothetical protein [Vibrio mimicus VM573]
 gi|258585733|gb|EEW10453.1| conserved hypothetical protein [Vibrio mimicus VM573]
          Length = 383

 Score =  348 bits (893), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 179/369 (48%), Positives = 252/369 (68%), Gaps = 11/369 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS +M D+   + GYE     ++AD+++LNTC IREKA EKV+  
Sbjct: 3   KKLLIKTWGCQMNEYDSSKMADLLNAANGYELTEIPEEADVLLLNTCSIREKAQEKVFHQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK+ +      +++ V GCVA  EG+ I  R+P V+V+ GPQT +RLPE+++++
Sbjct: 63  LGRWKTLKDKK----PGVVIGVGGCVATQEGDSIRDRAPYVDVIFGPQTLHRLPEMIKQS 118

Query: 144 RFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           +  +  V+D  +   +KF+RL        R  G TAF++I EGC K+CT+CVVPYTRG E
Sbjct: 119 QISEAPVMDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCSKYCTYCVVPYTRGEE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR +  V+ E  +L + GV E+ LLGQNVNA+RG   DGE C+F++LL  ++ I G+ R
Sbjct: 174 VSRPMDDVLFEIAQLAEQGVREVNLLGQNVNAYRGATHDGEICSFAELLRLVATIDGIDR 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP + +D +I  + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II ++
Sbjct: 234 IRFTTSHPLEFTDDIIAVYEDTPELVSFLHLPVQSGSDRILTMMKRPHTAIEYKSIIRKL 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R  RPDI ISSDFIVGFPGETD DF+ TM L+  + +  +FSF +SPR GTP ++    +
Sbjct: 294 RKARPDIQISSDFIVGFPGETDKDFQDTMKLIRDVDFDMSFSFIFSPRPGTPAADYPCDL 353

Query: 383 DENVKAERL 391
            E VK ERL
Sbjct: 354 SEEVKKERL 362


>gi|297539312|ref|YP_003675081.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Methylotenera sp. 301]
 gi|297258659|gb|ADI30504.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Methylotenera sp. 301]
          Length = 456

 Score =  347 bits (891), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 190/449 (42%), Positives = 276/449 (61%), Gaps = 14/449 (3%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           P++ F+K++GCQMN YDS RM DM   + G     + +DAD+I+LNTC +REKA +KV+S
Sbjct: 18  PKKVFIKTFGCQMNEYDSSRMADMLNATDGMVETLTPEDADVILLNTCSVREKAEDKVFS 77

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            LGR   LK    K   +L++ V GCVA  EG+ I++R+P V+VV GPQT +RLP++++ 
Sbjct: 78  HLGRFIPLK----KANPNLVIGVGGCVASQEGDNIIKRAPYVDVVFGPQTLHRLPDMIKS 133

Query: 143 ARFGKRVV-DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           ++       D  +   +KF+ L        R  G +AFL+I EGC K+C+FCVVPYTRG 
Sbjct: 134 SQSSGVSQVDISFPEIEKFDHLP-----PPRIEGASAFLSIMEGCSKYCSFCVVPYTRGE 188

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E+SR    ++ EA +L + GV EITLLGQNVNA+R +  D E    + L+  ++EI  + 
Sbjct: 189 EVSRPFEAILTEAAQLAEQGVKEITLLGQNVNAYRAQYNDLE-ADLAMLIEYIAEIPQVE 247

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHP +MS  LI    ++  L   LHLPVQ+GSDR+L +M R +TA +++  I +
Sbjct: 248 RIRFTTSHPNEMSQRLIDCFANIPKLAVQLHLPVQAGSDRVLMAMKRNYTALQFKSTIRK 307

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R   P++  +SDFI+GFPGE++ +F AT  L+  +G+  +FSF YSPR GTP S + ++
Sbjct: 308 LRVANPNLTFTSDFIIGFPGESEAEFEATAKLMQDVGFDYSFSFLYSPRPGTPASYLADE 367

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVL 440
             + VK  RL  LQ    E   S +   +G I  VLIE    K   +L G++   + V +
Sbjct: 368 TSQEVKLARLTKLQAINEELGKSISTQMLGTIQRVLIESASWKNANELAGKTDNNRIVDI 427

Query: 441 NSKNHNIGDIIKVRITDV-KISTLYGELV 468
                 I   + VRIT+V     L GE+V
Sbjct: 428 AGDKSLIHTFVNVRITNVSNPKRLRGEIV 456


>gi|88811726|ref|ZP_01126980.1| tRNA-i(6)A37 modification enzyme MiaB [Nitrococcus mobilis Nb-231]
 gi|88791117|gb|EAR22230.1| tRNA-i(6)A37 modification enzyme MiaB [Nitrococcus mobilis Nb-231]
          Length = 443

 Score =  347 bits (889), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 187/436 (42%), Positives = 273/436 (62%), Gaps = 12/436 (2%)

Query: 36  MNVYDSLRMEDMFFSQ-GYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSR 94
           MN YDS +M D+  ++ G+ERV S  DADLI+LNTC IR KA EKV+S LGR R LK   
Sbjct: 1   MNEYDSTKMVDVLGAERGFERVYSPLDADLILLNTCSIRAKAQEKVFSELGRWRPLK--- 57

Query: 95  IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR-VVDTD 153
            +    L++ V GCVA  EG  I+ R+P V++V GPQT +RLPE+ +R    +  VVDT 
Sbjct: 58  -ERNPGLVIGVGGCVASQEGATIIDRAPFVDLVFGPQTLHRLPEMYDRVLSTRAPVVDTS 116

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           +   +KF+RL        R  G TAF+++ EGC K+CTFCVVPYTRG E+SR    V+ E
Sbjct: 117 FPEIEKFDRLP-----EPRAVGPTAFVSVMEGCSKYCTFCVVPYTRGEEVSRPFEDVLAE 171

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
             +L + GV E+TLLGQNVN + G   DG     + L++ ++ + G+ R+R+TTSHP + 
Sbjct: 172 VAQLAEQGVREVTLLGQNVNGYLGTMDDGTVADLALLIHFIAAVDGIDRIRFTTSHPLNF 231

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
           +  LI+A+ ++  L+ +LHLPVQSGSD++L+ M R HT   Y  II+R+++ RPD+ +SS
Sbjct: 232 NATLIEAYAEVPQLVSHLHLPVQSGSDKVLRLMKRNHTRDYYLDIIERLKAARPDLVVSS 291

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLC 393
           DFIVGFPGE + DF  T+ LV+++G+ Q+FSF YS R GTP + + + +    K +RL  
Sbjct: 292 DFIVGFPGELERDFEDTLALVEQVGFDQSFSFIYSRRPGTPAAQLPDAIPLEAKKQRLYR 351

Query: 394 LQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRSPWLQSVVLNSKNHNIGDIIK 452
           LQ+ L       + + VG    +L++   K+   ++ GR+   + V        IG  ++
Sbjct: 352 LQEILNRNAQHVSQSMVGTTQTILVDGLSKKVASEVTGRTENNRVVNFPGPRRLIGRFVR 411

Query: 453 VRITDVKISTLYGELV 468
           + IT     +L G+L+
Sbjct: 412 IEITQALAHSLRGKLI 427


>gi|297568782|ref|YP_003690126.1| RNA modification enzyme, MiaB family [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296924697|gb|ADH85507.1| RNA modification enzyme, MiaB family [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 452

 Score =  346 bits (888), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 194/452 (42%), Positives = 278/452 (61%), Gaps = 21/452 (4%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
            +++++GCQMN  DS  M  +     Y   +  ++AD IV+NTC IR KAA+K YS LG 
Sbjct: 7   LYIETFGCQMNERDSEIMTQLMSQAAYLETSRPEEADCIVVNTCSIRGKAAQKAYSLLGG 66

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF- 145
            R LK  R     +L++ VAGCVAQ +GE +L++ P +++V+GPQ  YRLPEL+E AR  
Sbjct: 67  YRRLKKRR----PELVIAVAGCVAQQDGENLLKKMPHLDLVIGPQNIYRLPELVESARRQ 122

Query: 146 GKRVVDTDYS---VEDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
             R   T+ S   V   F  L  V+G   N KR    F+TI +GC+ FCT+CVVP+TRG 
Sbjct: 123 ATRTTATELSKDFVIPPF--LPQVNGTATNHKR----FVTIMQGCNNFCTYCVVPHTRGR 176

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW---RGK-GLDGEKCTFSDLLYSLSEI 257
           E+SR    +++E R L D+GV E+TLLGQNVN++   RG  G  G+   F  LL ++  +
Sbjct: 177 EVSRKPEDIINEVRHLADHGVREVTLLGQNVNSYGQDRGPAGTTGQIDDFPALLQAVVAV 236

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
           +G+ R+R+TTSHP+D+S  LI     L+ L P+ HLPVQSGSDRIL  MNR+++  +Y  
Sbjct: 237 EGIYRVRFTTSHPKDLSPELIDCFAQLNKLCPHFHLPVQSGSDRILARMNRKYSRADYLA 296

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
            + ++R VRPDIAI++D IVGFPGET+ DF ATM+LV+ + Y  AFSFKYS R     + 
Sbjct: 297 RVAQLRRVRPDIAITTDLIVGFPGETEADFEATMELVNFVRYDSAFSFKYSDRPNAAAAA 356

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQ 436
             ++V E VK+ RL  LQ++  E       + VG  +EV++E   K   G+  GR+P  +
Sbjct: 357 FDDKVPEEVKSRRLSLLQQRQEEISREIGRSMVGSTVEVMVEGRSKNSDGQWSGRTPTNR 416

Query: 437 SVVLNSKNH-NIGDIIKVRITDVKISTLYGEL 467
            V     +    G+++ V + +    +L G +
Sbjct: 417 IVNFTGPDSLRPGELVDVYLEEACRHSLRGRM 448


>gi|312882697|ref|ZP_07742434.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Vibrio
           caribbenthicus ATCC BAA-2122]
 gi|309369658|gb|EFP97173.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Vibrio
           caribbenthicus ATCC BAA-2122]
          Length = 461

 Score =  345 bits (884), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 190/436 (43%), Positives = 277/436 (63%), Gaps = 12/436 (2%)

Query: 36  MNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSR 94
           MN YDS +M D+   + GYE     ++AD+++LNTC IREKA EKV+  LGR + LK+ +
Sbjct: 1   MNEYDSSKMADLLNAANGYELTEEPEEADVLLLNTCSIREKAQEKVFHQLGRWKTLKDKK 60

Query: 95  IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG-KRVVDTD 153
                 +++ V GCVA  EG+ I  R+P V+V+ GPQT +RLPE++++++     ++D  
Sbjct: 61  KG----VVIGVGGCVATQEGDHIRERAPFVDVIFGPQTLHRLPEMIKQSQDDDAPIMDIS 116

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           +   +KF+RL        +  G TAF++I EGC K+CT+CVVPYTRG E+SR +  V+ E
Sbjct: 117 FPEIEKFDRLP-----EPKAEGATAFVSIMEGCSKYCTYCVVPYTRGEEVSRPMDDVLFE 171

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
             +L + GV E+ LLGQNVNA+RG   DG+ C+F++LL  ++ I G+ R+R+TTSHP + 
Sbjct: 172 IAQLAEQGVREVNLLGQNVNAYRGPMHDGDICSFAELLRLVASIDGIDRIRFTTSHPLEF 231

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
           +D +I  + +   L+ +LHLPVQSGSDRIL  M R HT  EY+ II ++R  RPDI ISS
Sbjct: 232 TDDIIAVYENTPELVSFLHLPVQSGSDRILTMMKRPHTGIEYKSIIRKLRKARPDIQISS 291

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLC 393
           DFIVGFPGETD DF+ TM L+  + +  +FSF +SPR GTP ++    V E  K +RL  
Sbjct: 292 DFIVGFPGETDKDFQDTMKLIKAVDFDMSFSFIFSPRPGTPAADYPCDVSEQEKKDRLYE 351

Query: 394 LQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNSKNHNIGDIIK 452
           LQ+ +  Q + ++   +     VL+E   K+   +L  R+   + V        IG  + 
Sbjct: 352 LQQTINSQAMRYSRQMLDTEQRVLVEGPSKKNLMELRARTENNRVVNFEGSPDLIGQFVD 411

Query: 453 VRITDVKISTLYGELV 468
           V+ITDV  ++L G+LV
Sbjct: 412 VKITDVFANSLRGDLV 427


>gi|219682347|ref|YP_002468731.1| isopentenyl-adenosine A37 tRNA methylthiolase MiaB (YleA) [Buchnera
           aphidicola str. Tuc7 (Acyrthosiphon pisum)]
 gi|219622080|gb|ACL30236.1| isopentenyl-adenosine A37 tRNA methylthiolase MiaB (YleA) [Buchnera
           aphidicola str. Tuc7 (Acyrthosiphon pisum)]
 gi|311086744|gb|ADP66825.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Buchnera
           aphidicola str. TLW03 (Acyrthosiphon pisum)]
          Length = 439

 Score =  345 bits (884), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 182/443 (41%), Positives = 274/443 (61%), Gaps = 12/443 (2%)

Query: 28  FVKSYGCQMNVYDSLRMEDMFFSQG-YERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           ++K++GCQMN YDS  +  +      Y    S ++AD+++LNTC IREKA EKV+  LGR
Sbjct: 5   YIKTWGCQMNEYDSSMIITLLEKNNQYSLTKSAENADILILNTCSIREKAQEKVFHQLGR 64

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
            + +KN+  K    +++ V GCVA  EG+EI +R+  V+++ G QT +RLP++++     
Sbjct: 65  WKKIKNNNPK----VIIAVGGCVATQEGKEIFKRANYVDIIFGTQTLHRLPKMIDEVEKK 120

Query: 147 KRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           +++ +D  +   +KF+          +K+G TA ++I EGC+K+C+FCVVPYTRG EISR
Sbjct: 121 RKLSIDISFPKLEKFKYFLAP-----KKKGYTADISIMEGCNKYCSFCVVPYTRGNEISR 175

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
               V+ E   L   G+ EI LLGQNVNA++G   +G+ C FS+L+  ++EI G+ R+R+
Sbjct: 176 PCDDVLFEISLLAKQGIKEINLLGQNVNAYQGPTFNGKVCYFSELIRLVAEIDGIERIRF 235

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
           TTS+P + +D +I+ + D   L+ +LHLPVQSGS++IL  M R +T  +Y  II ++   
Sbjct: 236 TTSNPLEFTDDIIEVYKDTPKLVSFLHLPVQSGSNKILNLMKRSYTTEDYTSIIKKLTIA 295

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
           RPDI ISSDFIVGFPGE++ DF  T++ +  I +  +FSF YS R GTP SNM + +D  
Sbjct: 296 RPDIQISSDFIVGFPGESEIDFEKTIEFIKNINFDMSFSFIYSARPGTPASNMNDNLDLK 355

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSVVLNSKN 444
            K  RL  LQ+++  Q + ++    G I  VL+E    K    L GR+   + V     +
Sbjct: 356 EKKRRLYILQERINIQTMLWSRKMFGSIQSVLVEGVSDKNIMDLYGRTENNRVVTFQGSS 415

Query: 445 HNIGDIIKVRITDVKISTLYGEL 467
             IG  + V+I  V   +L GEL
Sbjct: 416 EMIGQFVNVKIKKVHTHSLKGEL 438


>gi|219681792|ref|YP_002468178.1| isopentenyl-adenosine A37 tRNA methylthiolase MiaB (YleA) [Buchnera
           aphidicola str. 5A (Acyrthosiphon pisum)]
 gi|257471494|ref|ZP_05635493.1| isopentenyl-adenosine A37 tRNA methylthiolase MiaB (YleA) [Buchnera
           aphidicola str. LSR1 (Acyrthosiphon pisum)]
 gi|219624635|gb|ACL30790.1| isopentenyl-adenosine A37 tRNA methylthiolase MiaB (YleA) [Buchnera
           aphidicola str. 5A (Acyrthosiphon pisum)]
          Length = 439

 Score =  344 bits (883), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 182/443 (41%), Positives = 274/443 (61%), Gaps = 12/443 (2%)

Query: 28  FVKSYGCQMNVYDSLRMEDMFFSQG-YERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           ++K++GCQMN YDS  +  +      Y    S ++AD+++LNTC IREKA EKV+  LGR
Sbjct: 5   YIKTWGCQMNEYDSSMIITLLEKNNQYSLTKSAENADILILNTCSIREKAQEKVFHQLGR 64

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
            + +KN+  K    +++ V GCVA  EG+EI +R+  V+++ G QT +RLP++++     
Sbjct: 65  WKKIKNNNPK----VIIAVGGCVATQEGKEIFKRANYVDIIFGTQTLHRLPKMIDEVEKK 120

Query: 147 KRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           +++ +D  +   +KF+          +K+G TA ++I EGC+K+C+FCVVPYTRG EISR
Sbjct: 121 RKLSIDISFPKLEKFKYFLAP-----KKKGYTADISIMEGCNKYCSFCVVPYTRGNEISR 175

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
               V+ E   L   G+ EI LLGQNVNA++G   +G+ C FS+L+  ++EI G+ R+R+
Sbjct: 176 PCDDVLFEISLLAKQGIKEINLLGQNVNAYQGPTFNGKVCYFSELIRLVAEIDGIERIRF 235

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
           TTS+P + +D +I+ + D   L+ +LHLPVQSGS++IL  M R +T  +Y  II ++   
Sbjct: 236 TTSNPLEFTDDIIEVYKDTPKLVSFLHLPVQSGSNKILNLMKRSYTTEDYTSIIKKLTIA 295

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
           RPDI ISSDFIVGFPGE++ DF  T++ +  I +  +FSF YS R GTP SNM + +D  
Sbjct: 296 RPDIQISSDFIVGFPGESEIDFEKTIEFIKNINFDMSFSFIYSARPGTPASNMNDDLDLK 355

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSVVLNSKN 444
            K  RL  LQ+++  Q + ++    G I  VL+E    K    L GR+   + V     +
Sbjct: 356 EKKRRLYILQERINIQTMLWSRKMFGSIQSVLVEGVSDKNIMDLYGRTENNRVVTFQGSS 415

Query: 445 HNIGDIIKVRITDVKISTLYGEL 467
             IG  + V+I  V   +L GEL
Sbjct: 416 EMIGQFVNVKIKKVHTHSLKGEL 438


>gi|15617040|ref|NP_240253.1| hypothetical protein BU441 [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
 gi|11387299|sp|P57516|MIAB_BUCAI RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|25305427|pir||C84981 hypothetical protein [imported] - Buchnera sp. (strain APS)
 gi|10039105|dbj|BAB13139.1| hypothetical protein [Buchnera aphidicola str. APS (Acyrthosiphon
           pisum)]
          Length = 439

 Score =  344 bits (882), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 182/443 (41%), Positives = 274/443 (61%), Gaps = 12/443 (2%)

Query: 28  FVKSYGCQMNVYDSLRMEDMFFSQG-YERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           ++K++GCQMN YDS  +  +      Y    S ++AD+++LNTC IREKA EKV+  LGR
Sbjct: 5   YIKTWGCQMNEYDSSMIITLLEKNNQYSLTKSAENADILILNTCSIREKAQEKVFHQLGR 64

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
            + +KN+  K    +++ V GCVA  EG+EI +R+  V+++ G QT +RLP++++     
Sbjct: 65  WKKIKNNNPK----VIIAVGGCVATQEGKEIFKRANYVDIIFGTQTLHRLPKMIDEVEKK 120

Query: 147 KRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           +++ +D  +   +KF+          +K+G TA ++I EGC+K+C+FCVVPYTRG EISR
Sbjct: 121 RKLSIDISFPKLEKFKYFLAP-----KKKGYTADISIMEGCNKYCSFCVVPYTRGNEISR 175

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
               V+ E   L   G+ EI LLGQNVNA++G   +G+ C FS+L+  ++EI G+ R+R+
Sbjct: 176 PCDDVLFEISLLAKQGIKEINLLGQNVNAYQGPTFNGKVCYFSELIRLVAEIDGIERIRF 235

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
           TTS+P + +D +I+ + D   L+ +LHLPVQSGS++IL  M R +T  +Y  II ++   
Sbjct: 236 TTSNPLEFTDDIIEVYKDTPKLVSFLHLPVQSGSNKILNLMKRSYTTEDYTSIIKKLTIA 295

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
           RPDI ISSDFIVGFPGE++ DF  T++ +  I +  +FSF YS R GTP SNM + +D  
Sbjct: 296 RPDIQISSDFIVGFPGESEIDFEKTIEFIKNINFDMSFSFIYSARPGTPASNMNDDLDLK 355

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSVVLNSKN 444
            K  RL  LQ+++  Q + ++    G I  VL+E    K    L GR+   + V     +
Sbjct: 356 EKKRRLYILQERINIQTMLWSRKMFGSIQSVLVEGVSDKNIMDLYGRTENNRVVTFQGSS 415

Query: 445 HNIGDIIKVRITDVKISTLYGEL 467
             IG  + V+I  V   +L GEL
Sbjct: 416 KMIGQFVNVKIKKVHTHSLKGEL 438


>gi|319790575|ref|YP_004152208.1| RNA modification enzyme, MiaB family [Thermovibrio ammonificans
           HB-1]
 gi|317115077|gb|ADU97567.1| RNA modification enzyme, MiaB family [Thermovibrio ammonificans
           HB-1]
          Length = 442

 Score =  343 bits (880), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 183/445 (41%), Positives = 279/445 (62%), Gaps = 12/445 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +RFF+K++GCQMNV DS +M  +    GYE+  + ++AD++++NTC +R K   K YSF+
Sbjct: 3   KRFFIKTFGCQMNVNDSEKMAGLLRDMGYEKAQTPEEADIVIVNTCSVRAKPDNKAYSFI 62

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           G ++ LK  R     DL+V VAGCV Q E E+ILR  P V++V G   + +LP+LLER +
Sbjct: 63  GNLKRLKKRR----PDLVVAVAGCVPQKEKEQILR-FPHVDLVFGTFNFVKLPQLLERVK 117

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
              RVV+       + E+L +VD     +    A++T+Q GC++FCT+C+VP+TRG E S
Sbjct: 118 REGRVVEILNRKIPEEEKLPLVDSYL--ENPFIAYVTVQRGCNRFCTYCIVPFTRGRERS 175

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
            +   VV+E ++L + GV E+ LLGQNV+ +  +G D      +DLLY +SE++G+ R+R
Sbjct: 176 VAPHLVVEEVKRLAERGVKEVHLLGQNVDFYGYQGTD-----LADLLYMVSEVEGVERVR 230

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +TTSHP   S+ + +A  D+  + PY+HLP QSGS+R+L+ MNR +T  EY + +  +R 
Sbjct: 231 FTTSHPAGFSERIARAIRDIPKVCPYVHLPPQSGSNRVLERMNRGYTREEYIEKVQMLRE 290

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             P++A+S DFIVGFPGET++DF  T+ LV++  + QAF F+YSPR  T  +   + V +
Sbjct: 291 FVPNVALSGDFIVGFPGETEEDFEQTLSLVEECVFDQAFVFEYSPRPFTKAATFKDDVPK 350

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
            VK  RL  LQ+ +++Q +  N   VG++ EVLIE    +  +L GR+   + V +    
Sbjct: 351 EVKNRRLQTLQELVKKQALERNLERVGKVEEVLIEGFSPKGSELYGRTADNKPVAVEGSE 410

Query: 445 HNIGDIIKVRITDVKISTLYGELVV 469
             IG  ++V IT      L G+ V 
Sbjct: 411 ELIGKTVEVEITQASPFFLKGKPVT 435


>gi|15605821|ref|NP_213198.1| hypothetical protein aq_284 [Aquifex aeolicus VF5]
 gi|6226354|sp|O66638|MIAB_AQUAE RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|2982992|gb|AAC06605.1| hypothetical protein aq_284 [Aquifex aeolicus VF5]
          Length = 440

 Score =  343 bits (880), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 186/451 (41%), Positives = 289/451 (64%), Gaps = 24/451 (5%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++FF+K++GCQMN  DS R+  +  + GYE+ ++ ++ADLI+LNTC IREK  +KV S L
Sbjct: 3   KKFFIKTFGCQMNFNDSERIRGLLKTIGYEQTDNWEEADLIILNTCTIREKPDQKVLSHL 62

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           G  + +K    K     L+ VAGC+AQ  G E+++++P+++++      ++LPEL+ +A+
Sbjct: 63  GEYKKIKEKNPK----ALIAVAGCLAQRTGWELVKKAPVIDIMFSSFNMHQLPELINQAQ 118

Query: 145 FGKR---VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
            G +   ++D     EDK     I +    R     A++TI +GCDK CT+CVVP TRG 
Sbjct: 119 AGYKAIAILDELPQDEDK-----IWEYPVERDNKYCAYVTIIKGCDKNCTYCVVPRTRGK 173

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK-CTFSDLLYSLSEIKGL 260
           E SR+L  ++DE ++L+D+GV EI LLGQNV AW   G D EK   FS+LLY +S+I G+
Sbjct: 174 ERSRALHSILDEVKRLVDDGVREIHLLGQNVTAW---GKDFEKPIPFSELLYQVSKIDGV 230

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+TT HPRD++D +I+A  D+  +   LHLP Q+GS+RIL  M+R +T  EY + I+
Sbjct: 231 ERIRFTTGHPRDLTDDIIEAMADIPQVCNALHLPFQAGSNRILALMDRGYTKEEYLEKIE 290

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           +++    DIA+S+D IVGFP ET++DF  T+D++ K+ + Q FSFK+SPR GTP + M  
Sbjct: 291 KLKEKVKDIAMSTDVIVGFPTETEEDFEHTLDVLKKVRFEQVFSFKFSPRPGTPAAEMEG 350

Query: 381 QVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQS 437
           Q+ ++VK E   RLL LQK +  +     +   G + EVL+E+  ++ G+L+GR+   + 
Sbjct: 351 QIPDDVKTERMRRLLELQKSILSEIAKKYE---GTVQEVLVEE--EKNGELIGRTTTNKW 405

Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
                    +G I+K+++      +L GEL+
Sbjct: 406 ASFKGDPSLLGKIVKIKVIKSSPFSLEGELL 436


>gi|145641843|ref|ZP_01797418.1| hypothetical protein CGSHiR3021_01197 [Haemophilus influenzae
           R3021]
 gi|145273465|gb|EDK13336.1| hypothetical protein CGSHiR3021_01197 [Haemophilus influenzae
           22.4-21]
          Length = 328

 Score =  343 bits (880), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 170/332 (51%), Positives = 232/332 (69%), Gaps = 11/332 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           Q+  +K++GCQMN YDS +M D+  S  G E   + ++AD+++LNTC IREKA EKV+  
Sbjct: 3   QKLHIKTWGCQMNEYDSSKMADLLLSTHGLELTEAPEEADVLLLNTCSIREKAQEKVFHQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK    K   +L++ V GCVA  EGE I  R+P V+++ GPQT +RLPE++ + 
Sbjct: 63  LGRWKELK----KNNPNLVIGVGGCVASQEGEHIRHRAPYVDIIFGPQTLHRLPEMINQI 118

Query: 144 RFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           R GK  VVD  +   +KF+RL        R  G TAF++I EGC+K+CTFCVVPYTRG E
Sbjct: 119 RGGKSSVVDVSFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTFCVVPYTRGEE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR +  V+ E  +L + GV E+ LLGQNVNA+RG   DG+ C+F++LL  ++ I G+ R
Sbjct: 174 VSRPVDDVLFEIAQLAEQGVREVNLLGQNVNAYRGPTHDGQICSFAELLRLVASIDGIDR 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LR+TTSHP + +D +I  + D   L+ +LHLPVQ+GSDR+L  M R HTA EY+ II ++
Sbjct: 234 LRFTTSHPIEFTDDIIDVYRDTPELVSFLHLPVQAGSDRVLTMMKRAHTALEYKSIIRKL 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           R+VRPDI ISSDFIVGFPGET +DF  TM+L+
Sbjct: 294 RAVRPDIQISSDFIVGFPGETAEDFEQTMNLI 325


>gi|328952579|ref|YP_004369913.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Desulfobacca acetoxidans DSM 11109]
 gi|328452903|gb|AEB08732.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Desulfobacca acetoxidans DSM 11109]
          Length = 440

 Score =  343 bits (880), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 188/444 (42%), Positives = 280/444 (63%), Gaps = 15/444 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +  ++K+YGCQMNVYDS ++  +   + Y+  +  ++ADL ++NTC IR K+ EKV S +
Sbjct: 6   KNLYIKTYGCQMNVYDSEQIA-LILGRDYDLTDRPEEADLYLINTCSIRRKSEEKVLSLV 64

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-ERA 143
           GR++ LKN R +    +L+ V GCVAQ EGE +L+R+P +++V G Q  YRLP LL +R 
Sbjct: 65  GRLKGLKNRRPQ----MLLGVGGCVAQQEGERLLQRAPHLDLVFGAQGIYRLPHLLHQRL 120

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             GK VVDT +S +  +    +  G   +       +TI +GC+ +CT+CVVPY RG E 
Sbjct: 121 ESGKAVVDTSFSADLPYISGQVKPGAPKK------LVTIMQGCNNYCTYCVVPYVRGPER 174

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR  ++V++E +  +  G  E+TLLGQNVN++ GKGL  +  +F  LL  L+++ GLVRL
Sbjct: 175 SRPAAEVINEVQDFLRQGGQEVTLLGQNVNSY-GKGL-ADGLSFPGLLRRLAKLPGLVRL 232

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+TTSHPRD+SD LI    +L  L  ++HLPVQ+GS+ IL  M+R +T  EY   ++R+R
Sbjct: 233 RFTTSHPRDLSDDLICCFAELPPLCDHIHLPVQAGSNHILARMHRGYTREEYLHKVNRLR 292

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
            + P I++++D IVGFPGET+ DF  T+ L+ ++ +  AF FKYSPR  T  + +++Q+ 
Sbjct: 293 QICPGISLTTDLIVGFPGETEADFADTLALMREVAFDAAFYFKYSPRPQTAAAALVDQIP 352

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLVGRSPWLQSVVLNS 442
           E VKAERL  L+    E  ++ N   VGQ  EVL+E   K++  +L GR    Q V  + 
Sbjct: 353 EPVKAERLARLRILQEELSLASNQRLVGQFKEVLVEGLSKQQNQQLCGRLRSNQVVNFDG 412

Query: 443 KNHNIGDIIKVRITDVKISTLYGE 466
               IG ++ VRI    + +L G 
Sbjct: 413 PQDLIGRMVWVRIEKANLHSLGGH 436


>gi|94501476|ref|ZP_01307995.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Oceanobacter sp. RED65]
 gi|94426441|gb|EAT11430.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Oceanobacter sp. RED65]
          Length = 425

 Score =  343 bits (879), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 179/411 (43%), Positives = 264/411 (64%), Gaps = 11/411 (2%)

Query: 50  SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCV 109
           S   E  ++ ++AD+++LNTC IREKA EKV+  LGR   LK    ++  DL++ V GCV
Sbjct: 8   SHAMEITDNPEEADVLLLNTCSIREKAQEKVFHQLGRWNKLK----EKNPDLVIGVGGCV 63

Query: 110 AQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGG 169
           A  EG+ I +R+P V++V GPQT +RLPE ++ ++    VVD  +   +KF+ L      
Sbjct: 64  ASQEGDAIRKRAPQVDMVFGPQTLHRLPEFVDASKNSIPVVDITFPEIEKFDHLP----- 118

Query: 170 YNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLG 229
             +  G +AF++I EGC K+CTFCVVPYTRG E+SR  + V+ E  +L   GV E+ LLG
Sbjct: 119 APKVEGASAFVSIMEGCSKYCTFCVVPYTRGEEVSRPFADVMREVEQLAAQGVREVNLLG 178

Query: 230 QNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMP 289
           QNVNA++G+  DG+    ++L+ +++E++G+ R+R+TTSHP + SD LI+ + ++  L+ 
Sbjct: 179 QNVNAYQGQTDDGDIADLAELITAVAEVEGIDRIRFTTSHPVEFSDSLIQVYAEVPELVS 238

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +LHLPVQSGS+RIL +M R H    Y   I+RI+ +RPDI+ISSDFI+GFPGETD+DF  
Sbjct: 239 HLHLPVQSGSNRILSAMKRGHEIDMYIDKINRIKKLRPDISISSDFIIGFPGETDEDFED 298

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDAC 409
           TM+L+ +IG+  +FSF YS R GTP S + ++  E+VK +RL  LQ ++ +         
Sbjct: 299 TMNLIAEIGFDISFSFIYSARPGTPASELKDETPEDVKKQRLSILQNRITQNAQQIARRM 358

Query: 410 VGQIIEVLIEK-HGKEKGKLVGRSPWLQSVVLNSKNHN-IGDIIKVRITDV 458
           VG    VL+     K+ G+L GR+   + V     +   IG  +K RI D 
Sbjct: 359 VGNTETVLVTGVSKKDPGQLQGRTENNRVVNFRCDDQTLIGKFVKTRIEDA 409


>gi|239994932|ref|ZP_04715456.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Alteromonas macleodii
           ATCC 27126]
          Length = 332

 Score =  342 bits (878), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 170/341 (49%), Positives = 237/341 (69%), Gaps = 10/341 (2%)

Query: 58  SMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEI 117
           S ++AD+I+LNTC IREKA EKV+  LGR + LK  +     +L++ V GCVA  EG+ I
Sbjct: 1   SAEEADVILLNTCSIREKAQEKVFHQLGRWKTLKQDK----PELIIGVGGCVASQEGDTI 56

Query: 118 LRRSPIVNVVVGPQTYYRLPELLERARFG-KRVVDTDYSVEDKFERLSIVDGGYNRKRGV 176
            +R+P V++V GPQT +RLPE++ + + G K V+D  +   +KF+RL        R  G 
Sbjct: 57  RQRAPFVDLVFGPQTLHRLPEMINQLQGGAKSVIDVSFPEIEKFDRLP-----EPRAEGP 111

Query: 177 TAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR 236
           TAF++I EGC K+CTFCVVPYTRG E+SR +  V+ E  +L   GV E+ LLGQNVNA+R
Sbjct: 112 TAFVSIMEGCSKYCTFCVVPYTRGEEVSRPVDDVLLEIAQLAGQGVREVNLLGQNVNAYR 171

Query: 237 GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQ 296
           G+  DG  C FS+LL  ++ I G+ R+RYTTSHP + +D +I+A+  +  L+ +LHLPVQ
Sbjct: 172 GENYDGTICRFSELLELVAAIDGIDRIRYTTSHPVEFTDDIIEAYASIPELVDHLHLPVQ 231

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
           SGSDRIL  M R HTA EY+  + +++ +RP+I++SSDFI+GFPGETD DF ATMDL+  
Sbjct: 232 SGSDRILNLMKRGHTAIEYKSKMRKLKKIRPNISLSSDFIIGFPGETDADFEATMDLIQA 291

Query: 357 IGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKK 397
           + Y  +FSF YS R GTP ++ ++ V E  K +RL  LQ++
Sbjct: 292 VDYDLSFSFIYSARPGTPAADAVDDVSEETKKQRLHLLQQR 332


>gi|86158777|ref|YP_465562.1| (dimethylallyl)adenosine tRNA methylthiotransferase
           [Anaeromyxobacter dehalogenans 2CP-C]
 gi|123736702|sp|Q2IKE9|MIAB_ANADE RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|85775288|gb|ABC82125.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 464

 Score =  342 bits (876), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 193/457 (42%), Positives = 273/457 (59%), Gaps = 32/457 (7%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ +V ++GCQMN  DS RM ++     Y R  S D+ADLI+LNTC +REKA +K+ S L
Sbjct: 27  RKVYVHTFGCQMNESDSDRMVELLGRHAYARAASADEADLILLNTCAVREKAEQKLLSAL 86

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR R +K  R       L+ V+GCVAQ E + +L R P V+ V GP    RLPE++ERAR
Sbjct: 87  GRYREVKARR-----GALIAVSGCVAQQEKDRLLARVPYVDFVFGPDNIARLPEMVERAR 141

Query: 145 FGKRVVDTDY--SVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            G+R  +T +  S E  F R    D    R R  TAF+T  +GCD  C FC+VP+TRG E
Sbjct: 142 -GERFAETGWMDSEEYVFPR---ADAEAARGRA-TAFVTAMKGCDNVCAFCIVPHTRGRE 196

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR    VV E   L   GV E+TL+GQNVN++      G  CTF+DLL  ++ + G+ R
Sbjct: 197 VSRPFPDVVAECAALAAVGVREVTLIGQNVNSY------GGGCTFADLLRRVAAVPGIDR 250

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP D+S  L++   D   +MP+ HLPVQSGSD +L+ M R ++  EY    DR+
Sbjct: 251 IRFTTSHPHDLSGALVEVFRDEPKVMPHFHLPVQSGSDAVLRRMRRDYSVAEYLDRFDRL 310

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+ RP IAI++DFIVGFPGETD DF A++ L+++  + Q+FSF +SPR  T  +  L   
Sbjct: 311 RAARPGIAITTDFIVGFPGETDADFEASLALLERARFEQSFSFVFSPRPHTVAAVRLGSA 370

Query: 383 DEN---------VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSP 433
            E           + ERLL  Q+++  + ++   A +G+++EVL+E    E G+ +GR+P
Sbjct: 371 PEWQDVPRDVAVARLERLLAAQRRIAGEILA---AELGKVVEVLVEGPSDEPGERLGRTP 427

Query: 434 WLQSVVLNSKNHNIGDI--IKVRITDVKISTLYGELV 468
             + V L +          + VRIT    S+L G L 
Sbjct: 428 ENRVVHLTADEAAAPAGARVPVRITRAGGSSLSGTLA 464


>gi|300814699|ref|ZP_07094949.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Peptoniphilus sp. oral
           taxon 836 str. F0141]
 gi|300511172|gb|EFK38422.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Peptoniphilus sp. oral
           taxon 836 str. F0141]
          Length = 467

 Score =  341 bits (874), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 185/440 (42%), Positives = 278/440 (63%), Gaps = 13/440 (2%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V ++GCQMN +DS +++ +    GY+ +   ++ADL++LNTC +R  A +KVY  LG ++
Sbjct: 34  VITHGCQMNEHDSEKIKWLLEKMGYKLIEDDNEADLVILNTCSVRHSAEDKVYGQLGSLK 93

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQ--AEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           +LK +      +L V V GC+ Q  A  + ++ +   V+++ G    ++LPELL ++  G
Sbjct: 94  HLKTT----NKNLKVAVCGCMMQRQASRDYVIEKFENVDIIFGTNNIWKLPELLYKSYNG 149

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           +++      +++K+  L   + G NR     +++ I  GC+ FCTFC+VPYTRG E SR 
Sbjct: 150 QKL---SMDIQNKYLDLD-NNLGANRLYSYKSYVNIMYGCNNFCTFCIVPYTRGREKSRE 205

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
             ++VDE + LID G  EITLLGQNVN++ G+GL+  K TF+ LLY +++IKG+ R+R+ 
Sbjct: 206 ADEIVDEIKSLIDKGSKEITLLGQNVNSY-GRGLEN-KTTFAQLLYRINDIKGVERIRFM 263

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
           TSHP+D+SD LI A  DLD L  +LHLPVQ+GS RILK MNR++T  +Y + ID+IR V 
Sbjct: 264 TSHPKDISDELIYAFRDLDHLCNFLHLPVQAGSSRILKLMNRKYTKEDYLRKIDKIRQVN 323

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           PDIA+S+D +VGFPGET++DF  T+DLV ++ Y  +F+F YS R GTP +  L QV + +
Sbjct: 324 PDIALSTDIMVGFPGETEEDFEETLDLVKRVEYDTSFTFLYSMRSGTPAAKSLNQVPDKI 383

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSVVLNSKNH 445
           K ER   L   L   Q   N   + + ++VL E    K+  K+ GR+   + V  N    
Sbjct: 384 KHERFQKLLDILYPIQYEKNKKFINKTVKVLGEDISKKDSRKISGRNDEFKLVNFNGSAE 443

Query: 446 NIGDIIKVRITDVKISTLYG 465
           +IG I+ V+IT V    + G
Sbjct: 444 DIGKIVNVKITSVNSFAMEG 463


>gi|167045585|gb|ABZ10235.1| putative uncharacterized protein family UPF0004 [uncultured marine
           crenarchaeote HF4000_APKG10I20]
          Length = 472

 Score =  341 bits (874), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 186/459 (40%), Positives = 285/459 (62%), Gaps = 21/459 (4%)

Query: 19  DQCIVPQRFFVK-----SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIR 73
           D+ I  Q F +K     ++GCQMNV D+ RME + F  GY+R    +DADLI++NTC IR
Sbjct: 12  DRAIPLQSFHMKQVYLDTFGCQMNVADTDRMELVLFHSGYQRTLEKEDADLILVNTCSIR 71

Query: 74  EKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTY 133
           EKA +K +S  G ++ LK +      DL++ + GC+ Q EGE++L+R P ++ V+GP   
Sbjct: 72  EKAEQKTFSLFGGLKPLKMANP----DLILGLTGCLGQQEGEKLLKRMPYLDFVIGPDQV 127

Query: 134 YRLPELLERAR-FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTF 192
             + + ++R R  GK  V T +  ++K   +  +     +  G +AF+ I +GCDKFCTF
Sbjct: 128 EGIAQAVDRVRNTGKTFVWTGFD-QEKVYSIPELSRDLPKAPGPSAFVNIIKGCDKFCTF 186

Query: 193 CVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLY 252
           CVVP+TRG E SR   ++ +E R L+++G  EI LLGQNVN++  +GL  +   F +LLY
Sbjct: 187 CVVPFTRGREKSREPEELFEEIRHLVNHGAKEIILLGQNVNSYGKRGLK-KPVPFHELLY 245

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
            ++EI G+ RLR+TTSHP D +   I+A+ DLD+LM +LHLPVQSG++++LK+M R HT 
Sbjct: 246 GIAEIPGVQRLRFTTSHPNDFTRDTIRAYRDLDILMNHLHLPVQSGNNQMLKAMRRDHTI 305

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
            EY  ++  ++S  P I++S+D IVGFPGETD+ F  T+ +++++GY+ +F F YSPR G
Sbjct: 306 EEYLDLLAELKSEVPGISLSTDIIVGFPGETDEAFGDTLKIMEEVGYSSSFMFAYSPRPG 365

Query: 373 TPGSNMLEQVDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV 429
           TP + + + V E  K  RL   + LQ +  +QQ     + +G+ +EVLIE    + G + 
Sbjct: 366 TPANELSDSVPEETKKRRLQEIIALQSRQTKQQ---GQSFIGKNVEVLIEGRSSKPGYVY 422

Query: 430 -GRSPWLQSVVLNSKNH--NIGDIIKVRITDVKISTLYG 465
            GR+P   +V +         G+ + V +  V   +L G
Sbjct: 423 KGRNPQYWNVNIQGGEGILQAGETVTVLVKQVSGHSLNG 461


>gi|220916715|ref|YP_002492019.1| RNA modification enzyme, MiaB family [Anaeromyxobacter dehalogenans
           2CP-1]
 gi|219954569|gb|ACL64953.1| RNA modification enzyme, MiaB family [Anaeromyxobacter dehalogenans
           2CP-1]
          Length = 464

 Score =  341 bits (874), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 195/458 (42%), Positives = 275/458 (60%), Gaps = 32/458 (6%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P++ +V ++GCQMN  DS RM ++     Y R  S D+ADLI+LNTC +REKA +K+ S 
Sbjct: 26  PRKVYVHTFGCQMNESDSDRMVELLGRHAYARAASADEADLILLNTCAVREKAEQKLLSA 85

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR R +K  R       L+ V+GCVAQ E + +L R P V+ V GP    RLPE++ERA
Sbjct: 86  LGRYREVKARR-----GALIAVSGCVAQQEKDRLLARVPYVDFVFGPDNIGRLPEMVERA 140

Query: 144 RFGKRVVDTDY--SVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           R  +R  +T +  S E  F R    D    R R VTAF+T  +GCD  C FC+VP+TRG 
Sbjct: 141 R-DERFAETGWMDSEEYVFPR---ADPEAARGR-VTAFVTAMKGCDNVCAFCIVPHTRGR 195

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E+SR    VV E   L   GV E+TL+GQNVN++ G       CTF+DLL  ++ + G+ 
Sbjct: 196 EVSRPFPDVVAECAALAGVGVREVTLIGQNVNSYTGG------CTFADLLRRVAAVPGID 249

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHP D+SD L++   D   +MP+ HLPVQSGSD +L+ M R ++  EY    DR
Sbjct: 250 RIRFTTSHPHDLSDALVEVFRDEPKVMPHFHLPVQSGSDAVLRRMRRDYSVAEYLDRFDR 309

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R+ RP IAI++DFIVGFPGETD DF A++ L+++  + Q+FSF +SPR  T  +  L  
Sbjct: 310 LRAARPGIAITTDFIVGFPGETDADFEASLALLERARFEQSFSFVFSPRPHTVAAVRLGS 369

Query: 382 VDEN---------VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS 432
             E           + ERLL  Q+++  + ++     +G+++EVL+E    E G+ +GR+
Sbjct: 370 APEWQDVPRGTAVARLERLLAAQRRIAGEILAGE---LGKVVEVLVEGPSDEPGERLGRT 426

Query: 433 PWLQSVVL--NSKNHNIGDIIKVRITDVKISTLYGELV 468
           P  + V L  +      G  + VRIT    S+L G L 
Sbjct: 427 PENRVVHLAADEAAAPAGARVAVRITRAGGSSLSGTLA 464


>gi|167044878|gb|ABZ09545.1| putative uncharacterized protein family UPF0004 [uncultured marine
           crenarchaeote HF4000_APKG8D22]
          Length = 451

 Score =  340 bits (873), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 181/448 (40%), Positives = 282/448 (62%), Gaps = 16/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ ++ ++GCQMNV D+ RME + F  GY+R    +DADLI++NTC IREKA +K +S  
Sbjct: 2   KQVYLDTFGCQMNVADTDRMELVLFHSGYQRTLEKEDADLILVNTCSIREKAEQKTFSLF 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           G ++ LK +      DL++ + GC+ Q EGE++L+R P ++ V+GP     + + ++R R
Sbjct: 62  GGLKPLKMANP----DLILGLTGCLGQQEGEKLLKRMPYLDFVIGPDQVEGIAQAVDRVR 117

Query: 145 -FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             GK  V T +  ++K   +  +     +  G +AF+ I +GCDKFCTFCVVP+TRG E 
Sbjct: 118 NTGKTFVWTGFD-QEKVYSIPELSRDLPKAPGPSAFVNIIKGCDKFCTFCVVPFTRGREK 176

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR   ++ +E R L+++G  EI LLGQNVN++  +GL  +   F +LLY ++EI G+ RL
Sbjct: 177 SREPEELFEEIRHLVNHGAKEIILLGQNVNSYGKRGLK-KPVPFHELLYGIAEIPGVQRL 235

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+TTSHP D +   I+A+ DLD+LM +LHLPVQSG++++LK+M R HT  EY  ++  ++
Sbjct: 236 RFTTSHPNDFTRDTIRAYRDLDILMNHLHLPVQSGNNQMLKAMRRDHTIEEYLDLLAELK 295

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           S  P I++S+D IVGFPGETD+ F  T+ +++++GY+ +F F YSPR GTP + + + V 
Sbjct: 296 SEVPGISLSTDIIVGFPGETDEAFGDTLKIMEEVGYSSSFMFAYSPRPGTPANELSDSVP 355

Query: 384 ENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GRSPWLQSVV 439
           E  K  RL   + LQ +  +QQ     + +G+ +EVLIE    + G +  GR+P   +V 
Sbjct: 356 EETKKRRLQEIIALQSRQTKQQ---GQSFIGKNVEVLIEGRSSKPGYVYKGRNPQYWNVN 412

Query: 440 LNSKNH--NIGDIIKVRITDVKISTLYG 465
           +         G+ + V +  V   +L G
Sbjct: 413 IQGGEGILQAGETVTVLVKQVSGHSLNG 440


>gi|51245779|ref|YP_065663.1| hypothetical protein DP1927 [Desulfotalea psychrophila LSv54]
 gi|81641932|sp|Q6ALW9|MIAB_DESPS RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|50876816|emb|CAG36656.1| conserved hypothetical protein [Desulfotalea psychrophila LSv54]
          Length = 447

 Score =  340 bits (871), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 186/449 (41%), Positives = 282/449 (62%), Gaps = 16/449 (3%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           FF+K+YGCQMN+ DS  +  +  + GY   + +  ADL++LNTC IR KA +KV S LG 
Sbjct: 6   FFIKTYGCQMNLRDSEIIAQILNNNGYVETSEIGGADLVLLNTCSIRAKAEQKVMSKLGE 65

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           +R  +N +I     + + VAGCVAQ EG++I  + P V++V+G Q  Y + ELLER+R  
Sbjct: 66  LR--RNKKINP--RMQICVAGCVAQQEGKQIQAKMPHVDLVIGTQYIYAINELLERSRTE 121

Query: 147 KRVVDTDYSVEDKFERLSIV--DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
             +  T+  ++DK+     +    G   +     F+TI +GC+ FCT+CVVPYTRG E+S
Sbjct: 122 GPITATN--LDDKYVIPQFIPETTGKEHEGEFRKFVTIMQGCNNFCTYCVVPYTRGREVS 179

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL---DGEKCTFSDLLYSLSEIKGLV 261
           RS+  +V+E   L+ +G+ EITLLGQNVN++        D    TFSDLL  ++ ++GL 
Sbjct: 180 RSIKDIVEEITVLVKSGIKEITLLGQNVNSYAQTNTVTEDDTPATFSDLLRQVAAVEGLK 239

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           RLR+TTS+P+D+S+ L++   DLDVL P  HLPVQ+GS+++LK M R++T   Y  ++ +
Sbjct: 240 RLRFTTSNPKDLSNDLMQCFKDLDVLCPQFHLPVQAGSNKVLKEMGRKYTVESYLDLVTQ 299

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R   P+IAI++D IVGFPGETD++F  TM +++ + Y  +FSFKYS R GT  + +  +
Sbjct: 300 LRENCPEIAITTDIIVGFPGETDEEFEETMKMLETVRYHGSFSFKYSDRPGTKANELTNK 359

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE--KHGKEKGKLVGRSPWLQSVV 439
           VDE+VK+ RL   Q +  E  +  N   +G   EVLIE  + G+ KG++ G +  + ++ 
Sbjct: 360 VDESVKSARLARFQARQDEIGLERNQEYIGTTQEVLIEELRDGEIKGRM-GTNHIVHAIG 418

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
           L +K    GD +   +T     +L G +V
Sbjct: 419 LTNKKP--GDFLMAHVTAAGQHSLRGSIV 445


>gi|323143878|ref|ZP_08078542.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Succinatimonas hippei YIT
           12066]
 gi|322416350|gb|EFY07020.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Succinatimonas hippei YIT
           12066]
          Length = 452

 Score =  340 bits (871), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 186/444 (41%), Positives = 275/444 (61%), Gaps = 11/444 (2%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           F V  +GCQMNVYD+ R+ D+  S G+   +  ++AD+IVL TC +R KA +KV++   +
Sbjct: 17  FHVAVWGCQMNVYDADRIRDLLSSAGFMETSLPNNADIIVLVTCAVRAKAEDKVFN---Q 73

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-ERARF 145
           I + K   +    + ++ + GCV     EEI+     VN+V GP+T + LPE++ E    
Sbjct: 74  IASWKAKGVI-NANTVIALGGCVGSELAEEIINFDKNVNIVFGPRTVHHLPEMIREFLDT 132

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G  VV+      +KF+  S+ + G   +RG +AF+TI EGC   C++C+VPYTRG E SR
Sbjct: 133 GTPVVNVKGDALEKFD--SLPNPG---RRGPSAFVTIMEGCSNKCSYCIVPYTRGEEESR 187

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
               +++E +  I NGV EI LLGQNVN++RG   +G  C+FS+LLY ++ + G+ RLR+
Sbjct: 188 PEKDILEEIKIHIANGVKEIHLLGQNVNSYRGISDNGFTCSFSELLYEIAAVNGVERLRF 247

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
           TTS+P + +D +++A  DLDV+   +H+PVQSGSDRIL+ M RR+T+  YR++I ++R  
Sbjct: 248 TTSNPMEFTDDIVQAFADLDVIADAVHIPVQSGSDRILELMRRRYTSDSYRELIAKLRKA 307

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
           RP I +S+D IVGFPGETDDDF  TM LVD I + Q+FSF YS R GTP + + + +   
Sbjct: 308 RPQIHVSTDIIVGFPGETDDDFAKTMSLVDDIKFDQSFSFIYSKRPGTPAAVLEDPISAE 367

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSVVLNSKN 444
           VK  RL  LQ +L E  ++++   +     VL+E    K+  +L GR+   + VV     
Sbjct: 368 VKKSRLYTLQARLEEYALTYSQKMLNTRQRVLVEGVSRKDANELKGRASNNRIVVFEGST 427

Query: 445 HNIGDIIKVRITDVKISTLYGELV 468
             IG +  V I  V   TL G+L+
Sbjct: 428 DLIGSMADVDIIKVMSHTLKGQLI 451


>gi|282882002|ref|ZP_06290643.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Peptoniphilus lacrimalis
           315-B]
 gi|281298032|gb|EFA90487.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Peptoniphilus lacrimalis
           315-B]
          Length = 467

 Score =  340 bits (871), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 184/440 (41%), Positives = 278/440 (63%), Gaps = 13/440 (2%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V ++GCQMN +DS +++ +    GY+ +   ++ADL++LNTC +R  A +KVY  LG ++
Sbjct: 34  VITHGCQMNEHDSEKIKWLLEKMGYKLIEDDNEADLVILNTCSVRHSAEDKVYGQLGSLK 93

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQ--AEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           +LK +      +L V V GC+ Q  A  + ++ +   V+++ G    ++LPELL ++  G
Sbjct: 94  HLKTT----NKNLKVAVCGCMMQRQASRDYVIEKFENVDIIFGTNNIWKLPELLYKSYNG 149

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           +++      +++K+  L   + G NR     +++ I  GC+ FCTFC+VPYTRG E SR 
Sbjct: 150 QKL---SMDIQNKYLDLD-NNLGANRLYSYKSYVNIMYGCNNFCTFCIVPYTRGREKSRE 205

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
             ++VDE + LID G  EITLLGQNVN++ G+GL+  K +F+ LLY +++IKG+ R+R+ 
Sbjct: 206 ADEIVDEIKSLIDKGSKEITLLGQNVNSY-GRGLEN-KTSFAQLLYRINDIKGVERIRFM 263

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
           TSHP+D+SD LI A  DLD L  +LHLPVQ+GS RILK MNR++T  +Y + ID+IR V 
Sbjct: 264 TSHPKDISDELIYAFRDLDHLCNFLHLPVQAGSSRILKLMNRKYTKEDYLRKIDKIRQVN 323

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           PDIA+S+D +VGFPGET++DF  T+DLV ++ Y  +F+F YS R GTP +  L QV + +
Sbjct: 324 PDIALSTDIMVGFPGETEEDFEETLDLVKRVEYDTSFTFLYSMRSGTPAAKSLNQVPDKI 383

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSVVLNSKNH 445
           K ER   L   L   Q   N   + + ++VL E    K+  K+ GR+   + V  N    
Sbjct: 384 KHERFQKLLDILYPIQYEKNKKFINKTVKVLGEDISKKDSRKISGRNDEFKLVNFNGSAE 443

Query: 446 NIGDIIKVRITDVKISTLYG 465
           +IG I+ V+IT V    + G
Sbjct: 444 DIGKIVNVKITSVNSFAMEG 463


>gi|118594514|ref|ZP_01551861.1| tRNA-i(6)A37 modification enzyme MiaB [Methylophilales bacterium
           HTCC2181]
 gi|118440292|gb|EAV46919.1| tRNA-i(6)A37 modification enzyme MiaB [Methylophilales bacterium
           HTCC2181]
          Length = 441

 Score =  339 bits (870), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 181/447 (40%), Positives = 274/447 (61%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ F+K++GCQMN YDS ++ D+   S       S D AD+I+LNTC IRE+A  KVYS 
Sbjct: 3   KQLFIKTFGCQMNEYDSEKIVDVLKESSKISLTESPDHADIIILNTCSIRERAEVKVYSD 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE-R 142
           LGR R LK +      ++ + V GCVA  EGE I++R+P V++V GPQT +RLP LL+ R
Sbjct: 63  LGRYRKLKEN----NPNIRIAVGGCVASQEGENIIKRAPYVDLVFGPQTLHRLPSLLKKR 118

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
              G   +D  +   +KF+ L I      + +G +A ++I EGC K+C+FCVVPYTRG E
Sbjct: 119 ELLGTPQIDITFPEIEKFDSLPIT-----QFKGPSASVSIMEGCSKYCSFCVVPYTRGEE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           ISR L  ++DE  +L   GV EITLLGQNVNA+RG+      C F+ LL  ++EI  + R
Sbjct: 174 ISRPLDDILDEIIELTMIGVQEITLLGQNVNAYRGQSQHNGVCDFATLLEYVAEINEVKR 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP +M++ LI   G ++ L    HLP+QSGSDR+L +M R +T  EY+ II ++
Sbjct: 234 IRFTTSHPNEMTEELIACFGKINKLSKQFHLPIQSGSDRVLSAMKRNYTVLEYKSIIKKL 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           + V P+I+++SDFI+GFP ETD++F  T  +++++ +  +FSF YSPR GTP S + + +
Sbjct: 294 KKVCPEISLTSDFIIGFPNETDEEFNQTKKIMEEVNFDYSFSFLYSPRPGTPASFIKDNI 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441
            +  K  RL   Q     Q        +G    +LI++  K K G  +G++   + + ++
Sbjct: 354 SKEKKESRLREFQDMNIIQGKKHTLNMIGTKQRILIDRESKRKAGIFLGKTDNNRVIEVD 413

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
             +  +   + V+I  +    L G ++
Sbjct: 414 GSSEILNKFVNVKIKAISEKNLEGIII 440


>gi|313673797|ref|YP_004051908.1| tRNA-i(6)a37 thiotransferase enzyme miab [Calditerrivibrio
           nitroreducens DSM 19672]
 gi|312940553|gb|ADR19745.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Calditerrivibrio
           nitroreducens DSM 19672]
          Length = 438

 Score =  339 bits (869), Expect = 7e-91,   Method: Compositional matrix adjust.
 Identities = 187/451 (41%), Positives = 276/451 (61%), Gaps = 22/451 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ ++K++GCQMN YDS R+  +F   GY++ +  ++AD  V+NTC +REK  EKV S +
Sbjct: 3   KKVYIKTFGCQMNEYDSQRILSIFEESGYDKTDDPEEADFAVINTCSVREKPKEKVKSEI 62

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR++  KNS      D  + +AGCVAQ +GE IL+ +  V++V+G     +L E + R  
Sbjct: 63  GRLKRYKNS----NPDFKIAIAGCVAQEDGEAILKENKSVDLVIGTDGIPKLYEAISRVE 118

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G+R+  T++  +D           +NR   V+AF+TI +GCD FC++C+VPY RG E S
Sbjct: 119 KGERLAITEFYHDD------FTVPIFNRNSSVSAFVTIMKGCDNFCSYCIVPYVRGREKS 172

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R   +++DE + L+DNGV E+T LGQNVN++ GK LD EK  F+  LY  ++I GL R+R
Sbjct: 173 RHYKEILDEVKFLVDNGVREVTFLGQNVNSY-GKTLD-EKINFTQFLYMAAQIDGLNRIR 230

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           + TSHP+D ++ L+        +  YLHLP+Q+GS+ ILK MNR +T  EY + I   + 
Sbjct: 231 FVTSHPKDFNNDLVDLIASERKICEYLHLPLQAGSNDILKKMNRGYTFEEYEEKIFNAKE 290

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
               +A+SSDFIVGFPGETD+DF  T+  V  I Y   F+FKYSPR GT  S+M + + +
Sbjct: 291 KIKGLALSSDFIVGFPGETDEDFEQTLKAVKNIEYETIFAFKYSPRPGTKASSMQDNISD 350

Query: 385 NVKAERLLCLQKKLREQQVSFNDAC----VGQIIEVLIEKHGKEKGKLV-GRSPWLQSVV 439
             KA RL    KKL + Q    D      +G+  E+L+E   K+   +  GR+   + V 
Sbjct: 351 VEKANRL----KKLLDAQQIITDNLLKRQIGETQEILVEGKSKKDAHVYSGRNRKNRIVN 406

Query: 440 LNS-KNHNIGDIIKVRITDVKISTLYGELVV 469
             S K+   G+I+KV+IT  K ++L+G L V
Sbjct: 407 FTSEKSLQNGEIVKVKITQAKKNSLFGNLEV 437


>gi|251777774|ref|ZP_04820694.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Clostridium botulinum E1
           str. 'BoNT E Beluga']
 gi|243082089|gb|EES47979.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Clostridium botulinum E1
           str. 'BoNT E Beluga']
          Length = 457

 Score =  339 bits (869), Expect = 7e-91,   Method: Compositional matrix adjust.
 Identities = 187/449 (41%), Positives = 279/449 (62%), Gaps = 17/449 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + FF++++GCQMN  DS ++  M  SQGYE   + D+A +++ NTC +RE A  KV+  L
Sbjct: 19  KHFFIETWGCQMNEEDSEKLSGMLKSQGYEETENRDEASIVIFNTCCVRENAENKVFGNL 78

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           GR++N K    ++  +L++ + GC+ Q +G  +EIL R P V+++ G    Y+ PE L R
Sbjct: 79  GRLKNQK----EKNPNLIIALCGCMMQQKGMADEILSRFPYVDIIFGTHNAYKFPEYLHR 134

Query: 143 ARFGKRVVDTDYSVEDKFER-LSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
            +           V++ F++   IV+G   +RK  V AF+TI  GC+ FCT+CVVPY RG
Sbjct: 135 VQV------EGVQVKEIFDKETEIVEGVPIDRKSNVKAFVTIMYGCNNFCTYCVVPYVRG 188

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E SR    + +E ++L+ NG  EITLLGQNVN++ GKGL+ E+ TF+ LL  ++EI GL
Sbjct: 189 RERSRRPEDIENEIKELVSNGYKEITLLGQNVNSY-GKGLE-EEITFAQLLRRINEIGGL 246

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            RLR+ TSHP+D++  ++ A  D D L   +HLPVQSGS++IL+ MNR +   +Y ++  
Sbjct: 247 ERLRFMTSHPKDLTLDVVYAIRDCDKLCEQIHLPVQSGSNKILQKMNRHYNKEQYLELAK 306

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           +IR   PD+  S+D IVGFPGET++DF  T++LV ++ Y  AF+F YS R  TP   M  
Sbjct: 307 KIREEIPDVTFSTDIIVGFPGETEEDFEETINLVKEVRYDAAFTFIYSRRNHTPADKMEN 366

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVV 439
           Q+ ++VK +R   L   + E  V  N A  G+I EVL+E   K  + KL GR+   + V 
Sbjct: 367 QIPDDVKHDRFNRLVAAVNEGIVVGNKAAEGKIYEVLVEGTSKNNENKLTGRTRNAKLVN 426

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
            +     IG ++KV+I + K  +L GE+V
Sbjct: 427 FDGCKEMIGKLVKVKIIEAKSFSLVGEVV 455


>gi|188589964|ref|YP_001921085.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Clostridium botulinum E3
           str. Alaska E43]
 gi|229890484|sp|B2V276|MIAB_CLOBA RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|188500245|gb|ACD53381.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Clostridium botulinum E3
           str. Alaska E43]
          Length = 456

 Score =  339 bits (869), Expect = 7e-91,   Method: Compositional matrix adjust.
 Identities = 187/446 (41%), Positives = 275/446 (61%), Gaps = 15/446 (3%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           FF++++GCQMN  DS ++  M  SQGYE   + D+A +++ NTC +RE A  KV+  LGR
Sbjct: 20  FFIQTFGCQMNEEDSEKLSGMLKSQGYEETENRDEASIVIFNTCCVRENAENKVFGNLGR 79

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           ++N K    ++  +L++ + GC+ Q +G  +EIL R P V+++ G    Y+ PE L R +
Sbjct: 80  LKNQK----EKNPNLIIALCGCMMQQKGMADEILSRFPYVDIIFGTHNAYKFPEYLHRVQ 135

Query: 145 FGKRVVDTDYSVEDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
                V   +  E       IV+G   +RK  V AF+TI  GC+ FCT+CVVPY RG E 
Sbjct: 136 VEGVQVKEIFDKE-----TEIVEGVPIDRKSNVKAFVTIMYGCNNFCTYCVVPYVRGRER 190

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR    + +E ++L+ NG  EITLLGQNVN++ GKGL+ E+ TF+ LL  ++EI GL RL
Sbjct: 191 SRRPEDIENEIKELVSNGYKEITLLGQNVNSY-GKGLE-EEITFAQLLRRINEIDGLERL 248

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+ TSHP+D++  ++ A  D D L   +HLPVQSGS+ IL+ MNR +   +Y ++  +IR
Sbjct: 249 RFMTSHPKDLTLDVVYAIRDCDKLCEQIHLPVQSGSNEILQKMNRHYNKEQYLELAKKIR 308

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              PD+  S+D IVGFPGET++DF  T++LV ++ Y  AF+F YS R  TP   M +Q+ 
Sbjct: 309 EEIPDVTFSTDIIVGFPGETEEDFEETINLVKEVRYDAAFTFIYSRRNHTPADKMEDQIP 368

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVLNS 442
           ++VK +R   L   + E  V  N A  G+I EVL+E   K  + KL GR+   + V  + 
Sbjct: 369 DDVKHDRFNRLVAAVNEGIVVGNKAAEGKIYEVLVEGTSKNNENKLTGRTRNAKLVNFDG 428

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
               IG ++KV+I + K  +L GE+V
Sbjct: 429 CKEMIGKLVKVKIIEAKSFSLVGEVV 454


>gi|290953586|ref|ZP_06558207.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Francisella
           tularensis subsp. holarctica URFT1]
 gi|295313087|ref|ZP_06803777.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Francisella
           tularensis subsp. holarctica URFT1]
          Length = 427

 Score =  338 bits (867), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 187/437 (42%), Positives = 274/437 (62%), Gaps = 14/437 (3%)

Query: 36  MNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEKVYSFLGRIRNLKNS 93
           MN YDS RM ++  ++ ++ V + D  DAD+I++NTC IREKA EKV+  LGR + LK  
Sbjct: 1   MNEYDSARMHEVL-NEHFDTVKTDDYKDADIILINTCSIREKAQEKVFHELGRWKGLK-- 57

Query: 94  RIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV-VDT 152
             K   DL++ V GCVA  EGE I++R+P V++V GPQT +RLPE++++ +  ++  VD 
Sbjct: 58  --KTNEDLIIGVGGCVASQEGENIIKRAPFVDLVFGPQTIHRLPEMIKQKQKSQQSQVDI 115

Query: 153 DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVD 212
            +   +KF+ L        +  G  A+++I EGCDK+C++CVVPYTRG E++R    V+ 
Sbjct: 116 SFPEVEKFDYLP-----EPKAEGAKAYVSIMEGCDKYCSYCVVPYTRGPEVNRPFEDVLA 170

Query: 213 EARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
           E   L + GV EITLLGQNVN + G   +G+    + L++ ++EI G+ R+R+TTSHP +
Sbjct: 171 ECAILAEQGVKEITLLGQNVNHYLGPMENGQTADLALLIHFIAEIDGIERIRFTTSHPVE 230

Query: 273 MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAIS 332
            S  LI A+  +  L  +LHLPVQ GSDRIL +M R HT  E++Q I ++R++RPDI IS
Sbjct: 231 FSQNLIDAYATVPELANHLHLPVQHGSDRILINMKRNHTILEFKQKIRKLRAIRPDITIS 290

Query: 333 SDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLL 392
           SDFIVGFPGET++DF+  +DLV +I + Q+FSF YS R GTP +++ +     VK +RL 
Sbjct: 291 SDFIVGFPGETEEDFQKLLDLVKEINFDQSFSFIYSKRPGTPAADLPDDTPMEVKKDRLK 350

Query: 393 CLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVLNSKNHNIGDII 451
            LQ  L       +   VG    +L++   K+    L GR+   + V        IG   
Sbjct: 351 RLQDLLNSNAQIISRQMVGTNQRILVDGTSKKDDNILSGRTENNRVVNFKGDKSLIGQFA 410

Query: 452 KVRITDVKISTLYGELV 468
            V+IT+   ++L GEL+
Sbjct: 411 MVKITESLPNSLRGELI 427


>gi|323705356|ref|ZP_08116931.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323535258|gb|EGB25034.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 473

 Score =  338 bits (866), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 180/448 (40%), Positives = 284/448 (63%), Gaps = 17/448 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +F +++YGCQMNV+DS ++  M    GY+  ++++DAD+I+ NTC +R+ A  +++  + 
Sbjct: 34  KFHIETYGCQMNVHDSEKLAGMLTEMGYQHTDNLEDADVILFNTCCVRQHAEIRIFGRVS 93

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +++ LK  +     ++++ + GC+ Q +     I +  P +++V G    ++ PE+L+ A
Sbjct: 94  QLKELKQRK----PNIILGICGCMMQEKEVVAAIRKDYPYIDMVFGTHNLFKFPEILQEA 149

Query: 144 RFGKRVVDTDYSVEDKFERLS--IVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
                 +++D +V D ++  S  + D    R  G+ A++ I  GC+ FCT+C+VPY RG 
Sbjct: 150 ------LNSDTTVIDVWDDNSNIVEDIPIRRAEGLKAWVNIIYGCNNFCTYCIVPYVRGR 203

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR    ++DE + L D G  EITLLGQNVN++ G  L  +K  F+DLLY ++ I G+ 
Sbjct: 204 ERSREPKDIIDEIKSLADEGFKEITLLGQNVNSY-GNDL-SQKVDFADLLYMINNINGIE 261

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+ TSHP+D+SD LI A  DLD +  +LHLPVQSGS+RIL+ MNR++T   Y +II++
Sbjct: 262 RIRFMTSHPKDISDKLIFAIRDLDKVCEHLHLPVQSGSNRILEKMNRKYTRERYLEIIEK 321

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R   PDIAI++D IVGFPGETD+DF+ T+DLV K+ Y  A++F YS R GT    M +Q
Sbjct: 322 LRDNIPDIAITTDIIVGFPGETDEDFQDTLDLVKKVKYDSAYTFIYSKRKGTVAEKMPDQ 381

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVL 440
           VDE++K +RL  L K      +  N+   G+I+EVL+E   K +  KL GR+   + V  
Sbjct: 382 VDEDIKHKRLEELIKLQNSISIEKNNEMNGKIVEVLVEGTSKRDSDKLTGRTRTNKIVHF 441

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
             +++ IG  + V+I + K  T+ GEL+
Sbjct: 442 KGESNLIGKFVDVKIIETKAWTMQGELI 469


>gi|197121922|ref|YP_002133873.1| (dimethylallyl)adenosine tRNA methylthiotransferase
           [Anaeromyxobacter sp. K]
 gi|229890440|sp|B4UK35|MIAB_ANASK RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|196171771|gb|ACG72744.1| RNA modification enzyme, MiaB family [Anaeromyxobacter sp. K]
          Length = 464

 Score =  337 bits (865), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 194/457 (42%), Positives = 274/457 (59%), Gaps = 32/457 (7%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ +V ++GCQMN  DS RM ++     Y R  S D+ADLI+LNTC +REKA +K+ S L
Sbjct: 27  RKVYVHTFGCQMNESDSDRMVELLGRHAYARAASADEADLILLNTCAVREKAEQKLLSAL 86

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR R +K  R       L+ V+GCVAQ E + +L R P V+ V GP    RLPE++ERAR
Sbjct: 87  GRYREVKARR-----GALIAVSGCVAQQEKDRLLARVPYVDFVFGPDNIGRLPEMVERAR 141

Query: 145 FGKRVVDTDY--SVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
             +R  +T +  S E  F R    D    R R VTAF+T  +GCD  C FC+VP+TRG E
Sbjct: 142 -DERFAETGWMDSEEYVFPR---ADPEAARGR-VTAFVTAMKGCDNVCAFCIVPHTRGRE 196

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR    VV E   L   GV E+TL+GQNVN++ G       CTF+DLL  ++ + G+ R
Sbjct: 197 VSRPFPDVVAECAALAGVGVREVTLIGQNVNSYTGG------CTFADLLRRVAAVPGIDR 250

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP D+SD L++   D   +MP+ HLPVQSGSD +L+ M R ++  EY    DR+
Sbjct: 251 IRFTTSHPHDLSDALVEVFRDEPKVMPHFHLPVQSGSDAVLRRMRRDYSVAEYLDRFDRL 310

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+ RP IAI++DFIVGFPGETD DF A++ L+++  + Q+FSF +SPR  T  +  L   
Sbjct: 311 RAARPGIAITTDFIVGFPGETDADFEASLALLERARFEQSFSFVFSPRPHTVAAVRLGSA 370

Query: 383 DEN---------VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSP 433
            E           + ERLL  Q+++  + ++     +G+++EVL+E    E G+ +GR+P
Sbjct: 371 PEWRDVPREAAVARLERLLAAQRRIAGEILAGE---LGKVVEVLVEGPSDEPGERLGRTP 427

Query: 434 WLQSVVL--NSKNHNIGDIIKVRITDVKISTLYGELV 468
             + V L  +      G  + VRIT    S+L G L 
Sbjct: 428 ENRVVHLAADEAAAPAGARVAVRITRAGGSSLSGTLA 464


>gi|254479226|ref|ZP_05092571.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Carboxydibrachium
           pacificum DSM 12653]
 gi|214034827|gb|EEB75556.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Carboxydibrachium
           pacificum DSM 12653]
          Length = 471

 Score =  337 bits (864), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 184/446 (41%), Positives = 283/446 (63%), Gaps = 15/446 (3%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           + +++YGCQMNV+DS ++  M    GY+    ++ AD+++ NTC +RE A  +V   + +
Sbjct: 33  YHIETYGCQMNVHDSEKLAGMLEEMGYKYTEDLEKADVLLFNTCAVREHAEVRVLGRVSQ 92

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           I+ LKN       +L++ ++GC+ Q +   E I  + P V++V G    Y+ PELL +A 
Sbjct: 93  IKELKNR----NPNLIIGISGCMMQEKHIVEAIREKYPHVDIVFGTHNIYKFPELLWQAL 148

Query: 145 FGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             + +V+D   + ++  E L I      R   + A++ I  GC+ FCT+C+VPYTRG E 
Sbjct: 149 NSRVQVIDVIENTQNVIEGLPI-----RRDSNLKAWVNIIYGCNNFCTYCIVPYTRGREK 203

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR    ++ E ++L + G  EITLLGQNVN++ GK L G+   F+ LLY L++IKG+ R+
Sbjct: 204 SRRPEDIIAEVKELAEKGYKEITLLGQNVNSY-GKDLGGD-INFAKLLYMLNDIKGIERI 261

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+ TSHP+D+SD LI A  DLD +  +LHLPVQ+GS++ILK MNRR+T   Y +IID++R
Sbjct: 262 RFMTSHPKDISDELIYAMRDLDKVCEHLHLPVQAGSNKILKRMNRRYTREHYLEIIDKVR 321

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           +  PDIAI++D IVGFPGET++DF  T+DLV+++ +  A++F YS R GTP ++M +QVD
Sbjct: 322 ANIPDIAITTDIIVGFPGETEEDFLQTLDLVERVRFDGAYTFMYSKRAGTPAASMPDQVD 381

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVLNS 442
           + VK +RL+ L +   +  +  +    G+++EVLIE   K +  KL  R+   + V    
Sbjct: 382 DEVKKDRLIRLIELQNKISLEKSAELKGKVVEVLIEGVSKRDPNKLTSRTRTNKVVHFIG 441

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
               IG +  V+IT+ K  T+ GELV
Sbjct: 442 DESLIGKLANVKITETKAWTMQGELV 467


>gi|20807803|ref|NP_622974.1| 2-methylthioadenine synthetase [Thermoanaerobacter tengcongensis
           MB4]
 gi|81481577|sp|Q8RA72|MIAB_THETN RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|20516361|gb|AAM24578.1| 2-methylthioadenine synthetase [Thermoanaerobacter tengcongensis
           MB4]
          Length = 471

 Score =  337 bits (864), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 184/446 (41%), Positives = 283/446 (63%), Gaps = 15/446 (3%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           + +++YGCQMNV+DS ++  M    GY+    ++ AD+++ NTC +RE A  +V   + +
Sbjct: 33  YHIETYGCQMNVHDSEKLAGMLEEMGYKYTEDLEKADVLLFNTCAVREHAEVRVLGRVSQ 92

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           I+ LKN       +L++ ++GC+ Q +   E I  + P V++V G    Y+ PELL +A 
Sbjct: 93  IKELKNR----NPNLIIGISGCMMQEKHIVEAIREKYPHVDIVFGTHNIYKFPELLWQAL 148

Query: 145 FGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             + +V+D   + ++  E L I      R   + A++ I  GC+ FCT+C+VPYTRG E 
Sbjct: 149 NSRVQVIDVIENTQNVIEGLPI-----RRDSNLKAWVNIIYGCNNFCTYCIVPYTRGREK 203

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR    ++ E ++L + G  EITLLGQNVN++ GK L G+   F+ LLY L++IKG+ R+
Sbjct: 204 SRRPEDIIAEVKELAEKGYKEITLLGQNVNSY-GKDLGGD-INFAKLLYMLNDIKGIERI 261

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+ TSHP+D+SD LI A  DLD +  +LHLPVQ+GS++ILK MNRR+T   Y +IID++R
Sbjct: 262 RFMTSHPKDISDELIYAMRDLDKVCEHLHLPVQAGSNKILKRMNRRYTREHYLEIIDKVR 321

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           +  PDIAI++D IVGFPGET++DF  T+DLV+++ +  A++F YS R GTP ++M +QVD
Sbjct: 322 ANIPDIAITTDIIVGFPGETEEDFFQTLDLVERVRFDGAYTFMYSKRAGTPAASMPDQVD 381

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVLNS 442
           + VK +RL+ L +   +  +  +    G+++EVLIE   K +  KL  R+   + V    
Sbjct: 382 DEVKKDRLIRLIELQNKISLEKSAELKGKVVEVLIEGVSKRDPNKLTSRTRTNKVVHFIG 441

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
               IG +  V+IT+ K  T+ GELV
Sbjct: 442 DESLIGKLANVKITETKAWTMQGELV 467


>gi|187935420|ref|YP_001886001.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Clostridium botulinum B
           str. Eklund 17B]
 gi|229890485|sp|B2TIA8|MIAB_CLOBB RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|187723573|gb|ACD24794.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Clostridium botulinum B
           str. Eklund 17B]
          Length = 456

 Score =  336 bits (862), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 186/449 (41%), Positives = 278/449 (61%), Gaps = 17/449 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + FF++++GCQMN  DS ++  M  SQGYE   + D+A +++ NTC +RE A  KV+  L
Sbjct: 19  KHFFIETWGCQMNEEDSEKLSGMLKSQGYEETENRDEASIVIFNTCCVRENAENKVFGNL 78

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           GR++N K    ++  +L++ + GC+ Q +G  +EIL R P V+++ G    Y+ PE L R
Sbjct: 79  GRLKNQK----EKNPNLIIALCGCMMQQKGMADEILSRFPYVDIIFGTHNAYKFPEYLHR 134

Query: 143 ARFGKRVVDTDYSVEDKFER-LSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
            +           V++ F++   IV+G   +RK  V AF+TI  GC+ FCT+CVVPY RG
Sbjct: 135 VQV------EGVQVKEIFDKETEIVEGVPIDRKSNVKAFVTIMYGCNNFCTYCVVPYVRG 188

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E SR    + +E ++L+ +G  EITLLGQNVN++ GKGL+ E+ TF+ LL  ++EI GL
Sbjct: 189 RERSRRPEDIENEIKELVSSGYKEITLLGQNVNSY-GKGLE-EEITFAQLLRRINEIDGL 246

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            RLR+ TSHP+D++  ++ A  D D L   +HLPVQSGS+ IL+ MNR +   +Y ++  
Sbjct: 247 ERLRFMTSHPKDLTLDVVYAIRDCDKLCEQIHLPVQSGSNEILQKMNRHYNKEQYLELAK 306

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           +IR   PD+  S+D IVGFPGET++DF  T++LV ++ Y  AF+F YS R  TP   M  
Sbjct: 307 KIREEIPDVTFSTDIIVGFPGETEEDFEETINLVKEVRYDAAFTFIYSRRNHTPADKMEN 366

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVV 439
           Q+ ++VK +R   L   + E  V  N A  G+I EVL+E   K  + KL GR+   + V 
Sbjct: 367 QIPDDVKHDRFNRLVAAVNEGIVVGNKAAEGKIYEVLVEGTSKNNENKLTGRTRNAKLVN 426

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
            +     IG ++KV+I + K  +L GE+V
Sbjct: 427 FDGCKEMIGKLVKVKIIEAKSFSLVGEVV 455


>gi|284115804|ref|ZP_06386693.1| tRNA-i(6)A37 modification enzyme MiaB [Candidatus Poribacteria sp.
           WGA-A3]
 gi|283829554|gb|EFC33903.1| tRNA-i(6)A37 modification enzyme MiaB [Candidatus Poribacteria sp.
           WGA-A3]
          Length = 436

 Score =  336 bits (861), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 180/445 (40%), Positives = 284/445 (63%), Gaps = 22/445 (4%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
            ++++YGCQMN YDS R+++     G        +AD++++NTC IREKA +K  S LGR
Sbjct: 6   LYLETYGCQMNEYDSDRIQNAL---GASITEDPKEADIVIVNTCAIREKADQKALSSLGR 62

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
            ++LK     +  +L+V V+GCVAQ  GE+++RR P ++ V+GP+   +LP+L+E  +  
Sbjct: 63  FKHLK----AKNPELIVGVSGCVAQLYGEDLIRRIPHLDFVLGPRAIPQLPQLIEEIKEK 118

Query: 147 K-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           K R V+T + +++ F+ L      Y+++    AF++IQ+GC+K C +C+VP  RG E++R
Sbjct: 119 KSRPVETSFDIQEPFDVLP-----YHQEGKPAAFVSIQQGCNKKCAYCIVPTVRGSEVNR 173

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            +  ++ EAR LI  GV EITL+GQ VN+W+  GL      F DLL  L E+ GL R+R+
Sbjct: 174 PIEDIIAEARYLIAKGVKEITLIGQTVNSWKLGGL-----KFGDLLRVLGELDGLERIRF 228

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
           TTS+PRD++  +++A  D+  +  ++HLPVQSGSD++L+ MNR ++   Y   ++R+R  
Sbjct: 229 TTSYPRDITKKMVEAMADVPKVCRHIHLPVQSGSDKVLRLMNRTYSRSWYIDSVNRLRDA 288

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML---EQV 382
            P+IA+SSD IVGFPGET+DDF  TM LV+++G+  +FSFKYSPR GT G  +    E+V
Sbjct: 289 MPNIAVSSDIIVGFPGETEDDFEQTMSLVEEVGFDSSFSFKYSPRPGTVGEELWRSGERV 348

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLN 441
           +++   +RL  LQ+  R   +  N   +G+  +VL+E    K+   L GR+   + V   
Sbjct: 349 EDSTAGQRLARLQEYQRAITLEKNAQRIGKSEQVLVEDASRKDSSWLSGRTEHNRIVNFP 408

Query: 442 SKNHNIGDIIKVRITDVKISTLYGE 466
            +   IG ++ VRIT+   ++L G+
Sbjct: 409 GEKELIGKMVDVRITEGLANSLRGQ 433


>gi|153831444|ref|ZP_01984111.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Vibrio cholerae 623-39]
 gi|148873074|gb|EDL71209.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Vibrio cholerae 623-39]
          Length = 375

 Score =  335 bits (860), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 178/378 (47%), Positives = 252/378 (66%), Gaps = 11/378 (2%)

Query: 36  MNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSR 94
           MN YDS +M D+   + GYE     ++AD+++LNTC IREKA EKV+  LGR + LK+ +
Sbjct: 1   MNEYDSSKMADLLNAANGYELTEIPEEADVLLLNTCSIREKAQEKVFHQLGRWKTLKDKK 60

Query: 95  IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG-KRVVDTD 153
                 +++ V GCVA  EG+ I  R+P V+V+ GPQT +RLPE++++++     V+D  
Sbjct: 61  ----PGVVIGVGGCVATQEGDSIRDRAPYVDVIFGPQTLHRLPEMIKQSQTSDAPVMDIS 116

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           +   +KF+RL        R  G TAF++I EGC K+CT+CVVPYTRG E+SR +  V+ E
Sbjct: 117 FPEIEKFDRLP-----EPRAEGPTAFVSIMEGCSKYCTYCVVPYTRGEEVSRPMDDVLFE 171

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
             +L + GV E+ LLGQNVNA+RG   DG  C+F++LL  ++ I G+ R+R+TTSHP + 
Sbjct: 172 IAQLAEQGVREVNLLGQNVNAYRGATHDGGICSFAELLRLVATIDGIDRIRFTTSHPLEF 231

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
           +D +I  + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II ++R  RPDI ISS
Sbjct: 232 TDDIIAVYEDTPELVSFLHLPVQSGSDRILTMMKRPHTAIEYKSIIRKLRKARPDIQISS 291

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLC 393
           DFIVGFPGETD DF+ TM L+  + +  +FSF +SPR GTP ++    + E VK ERL  
Sbjct: 292 DFIVGFPGETDKDFQDTMKLIRDVDFDMSFSFIFSPRPGTPAADYPCDLSEEVKKERLYE 351

Query: 394 LQKKLREQQVSFNDACVG 411
           LQ+++  Q + ++   +G
Sbjct: 352 LQQQINSQAMRYSRLMLG 369


>gi|254518915|ref|ZP_05130971.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Clostridium sp.
           7_2_43FAA]
 gi|226912664|gb|EEH97865.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Clostridium sp.
           7_2_43FAA]
          Length = 444

 Score =  334 bits (857), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 184/447 (41%), Positives = 278/447 (62%), Gaps = 17/447 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +++++++GCQMN  DS ++  M  S GY +  S+++A +I+ NTC +RE A  KV+  LG
Sbjct: 9   KYYIETWGCQMNEEDSEKLSGMLKSVGYTKTESIEEAGIIIYNTCCVRENAENKVFGNLG 68

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERA 143
            +++LK    K+  DL++ V GC+ Q EG  ++IL++ P VN++ G    Y+ PE L R 
Sbjct: 69  ELKHLK----KKNPDLIIAVCGCMMQQEGMADKILKKFPHVNIIFGTHNAYKFPEYLNRV 124

Query: 144 RFGKRVVDTDYSVEDKFERLS-IVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           +           V++ F + S IV+G   +R+  V AF+TI  GC+ FCT+CVVPY RG 
Sbjct: 125 K------TEGVQVKEIFNKESEIVEGLPIDRESDVKAFVTIMYGCNNFCTYCVVPYVRGR 178

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR    +++E + L+  G  EITLLGQNVN++ GKGL+ E   F+ LL  ++E+ GL 
Sbjct: 179 ERSRKSEDIINEIKDLVSKGYKEITLLGQNVNSY-GKGLE-EDIDFAKLLRKINEVDGLE 236

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+ TSHP+D++  +I A  + D L   +HLPVQSGSDRILK MNR +T   Y +++D 
Sbjct: 237 RVRFMTSHPKDLNKDVILAIKECDKLCEQIHLPVQSGSDRILKKMNRHYTKEYYLELVDM 296

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I+   PD+++++D IVGFPGET++DF  T+DLV+++GY  AF+F YS R  TP   ML Q
Sbjct: 297 IKREIPDVSLTTDIIVGFPGETEEDFLDTLDLVERVGYDSAFTFIYSRRNNTPADMMLNQ 356

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLVGRSPWLQSVVL 440
           V +  K  R   L K + E  +  N    G+ +EVL+E   K    KL GR+   + V  
Sbjct: 357 VPDADKHHRFDRLIKVVNEGVIKSNKVYEGKTVEVLVEGPSKNDATKLTGRTRNGKLVNF 416

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGEL 467
           + +N   GD++ V+I   +  +L GE+
Sbjct: 417 SGENVKAGDLVNVKIVRAQPFSLVGEV 443


>gi|302871702|ref|YP_003840338.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Caldicellulosiruptor
           obsidiansis OB47]
 gi|302574561|gb|ADL42352.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Caldicellulosiruptor
           obsidiansis OB47]
          Length = 471

 Score =  334 bits (856), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 176/447 (39%), Positives = 279/447 (62%), Gaps = 14/447 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +++ + +YGCQMNV+DS ++  M  + GY    ++ +ADLI+ NTC +RE A  +VY  +
Sbjct: 36  KKYHIVTYGCQMNVHDSEKLAGMLNAMGYVETENIQEADLIIFNTCSVREHAESRVYGNI 95

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAE--GEEILRRSPIVNVVVGPQTYYRLPELLER 142
           G ++ LK+ +     DL++ V GC+ Q     +++ +  P ++++ G ++ ++ P+LL  
Sbjct: 96  GPLKRLKDKK----PDLIIGVCGCMPQQVEVAQKLAKLFPFLDIIFGTKSLHKFPQLLYT 151

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           A   K+ V      ED      +V+G    R++GV+AF+ I  GC+ FCT+C+VPY RG 
Sbjct: 152 AITEKKTVIDISEDED-----VVVEGIPTARRQGVSAFVNIIYGCNNFCTYCIVPYVRGR 206

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR   +++ E  +L+ NGV E+TLLGQNVN++ GK L     TF  LL  ++EIKG+ 
Sbjct: 207 ERSRRPEEIIYEIEQLVQNGVKEVTLLGQNVNSY-GKDL-ANGITFPKLLEKVNEIKGIE 264

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+ TSHP+D+SD LI A  DLD +  ++HLPVQSGS RILK+MNR +T  +Y +++++
Sbjct: 265 RIRFVTSHPKDLSDELIVAMRDLDKVCEHIHLPVQSGSTRILKAMNRHYTKEDYLRLVEK 324

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +++  PDIAI++D IVGFPGETD+DF  T+D+  K+ +  A++F YS R GTP   M  Q
Sbjct: 325 LKTNIPDIAITTDIIVGFPGETDEDFEDTLDVCQKVEFDSAYTFIYSKRRGTPAEKMPNQ 384

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           V E++K +R   L K + E  +  N   +G+  E+LI+   K    LVGR+   + V + 
Sbjct: 385 VPEDIKHQRFQRLVKLVEEIALKKNKQMLGKTYEILIDSRSKRNNLLVGRTRTNKVVNVK 444

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
             +  +   + V+I +     LYGE++
Sbjct: 445 CPDEYMFKFVNVKILEAAEHWLYGEVI 471


>gi|28210988|ref|NP_781932.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Clostridium
           tetani E88]
 gi|75542486|sp|Q895H1|MIAB_CLOTE RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|28203427|gb|AAO35869.1| miaB protein [Clostridium tetani E88]
          Length = 453

 Score =  334 bits (856), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 185/447 (41%), Positives = 283/447 (63%), Gaps = 17/447 (3%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           FF++++GCQMN  DS ++  M  + GY+     + AD+I+ NTC +RE A  KVY  LG 
Sbjct: 19  FFIETWGCQMNEEDSEKLSGMLKNIGYKNAEDKNQADIIIFNTCCVRENAELKVYGNLGA 78

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           ++ LK+    +  +L++ V GC+ Q EG  E I+++ P V+++ G    Y+ PE L RA+
Sbjct: 79  LKGLKS----KNPNLIIAVCGCMMQQEGMAEAIIKKYPFVDIIFGTHNSYKFPEYLNRAK 134

Query: 145 -FGKRVVDTDYSVEDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
             GK +++    V DK E   IV+G   +RK    AF+TI  GC+ FCT+C+VPY RG E
Sbjct: 135 QEGKSIIE----VWDKEEE--IVEGIPVDRKSSTKAFVTIMYGCNNFCTYCIVPYVRGRE 188

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR +S +  E ++L+ +G  EITLLGQNVN++ GK L+  K +F++LL  ++EI+G+ R
Sbjct: 189 RSREVSDIEKEIKELVKSGYKEITLLGQNVNSY-GKDLEP-KVSFAELLRHVNEIEGIER 246

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+ TSHP+D+++ +I A  + D L  ++HLPVQSGS RILK MNR +   +Y  ++++I
Sbjct: 247 VRFMTSHPKDLTEDVIYAIKECDKLCNHIHLPVQSGSSRILKKMNRYYNREDYLNLVNKI 306

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           +   P++AI++D IVGFPGET++DF  T++LV ++ Y  AF+F YS R GTP  ++ EQV
Sbjct: 307 KEEIPNVAITTDIIVGFPGETEEDFNETLELVKEVEYDSAFTFLYSKRKGTPAYDIEEQV 366

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVLN 441
            E+VK +R   L + + +     N     +I++VL+E   K +K KL GR+   + V   
Sbjct: 367 PEDVKHDRFKKLVEVVNKSCEKNNKKYQDRIVKVLVEGESKNDKNKLSGRTDTAKLVNFI 426

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
               NIG I+ V+IT     +L GE V
Sbjct: 427 GNKDNIGKIVDVKITKTLSFSLEGEEV 453


>gi|253681530|ref|ZP_04862327.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Clostridium botulinum D
           str. 1873]
 gi|253561242|gb|EES90694.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Clostridium botulinum D
           str. 1873]
          Length = 447

 Score =  333 bits (854), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 177/448 (39%), Positives = 281/448 (62%), Gaps = 15/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +RFF+ ++GCQMN  DS ++  +    GY R +  DDAD+++ NTC +RE A +KVY  L
Sbjct: 11  KRFFISTWGCQMNEEDSEKISGLLKGIGYTRTDIRDDADVVIFNTCCVRENAEQKVYGHL 70

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G ++ LK    ++  DL+++V GC+ Q +G  E+++ + P V+V+ G    Y+LPE +ER
Sbjct: 71  GELKALK----RKNPDLILIVTGCMMQQKGMPEKVMEKFPHVDVIAGTYNSYKLPEYIER 126

Query: 143 ARF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
            +  GK +++     +D  E L +     +RK  + AF+TI  GC+ FC++C+VPY RG 
Sbjct: 127 VKTEGKSIIEIWDKEKDIVEGLPV-----DRKSDIKAFVTIMYGCNNFCSYCIVPYVRGR 181

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR    +VDE + L+  G  EITLLGQNVN++ GKGL  E   F+DLL  +++I+GL 
Sbjct: 182 ERSRDPQNIVDEIKDLVSKGYKEITLLGQNVNSY-GKGLIPE-INFADLLRMVNKIEGLE 239

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+ TSHP+D+SD LIKA  + + +    H  +QSGS +IL+ MNR++T  +Y  ++ +
Sbjct: 240 RIRFMTSHPKDVSDELIKAMAECEKVCEQGHFALQSGSTKILEKMNRKYTREDYLNLVKK 299

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R   P+I IS+D IVG+PGET++DF  T+ +V +I +  AF+F YS R GTP +   +Q
Sbjct: 300 LRVAMPNIGISTDIIVGYPGETEEDFEETLSIVKEIEFDSAFTFIYSKREGTPAAKHEDQ 359

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVL 440
           V ++VK  R   L + + E     N    G+++EVL+E   K +  KL+GR+   + V  
Sbjct: 360 VPDDVKHARFNRLVEAINEIMARKNKKFDGEVVEVLVEGPSKNDDTKLMGRTRTGKLVNF 419

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
           +   +N+G ++ ++IT     +L GE++
Sbjct: 420 DGDINNVGKLVNIKITKANSFSLTGEII 447


>gi|163781959|ref|ZP_02176959.1| oxaloacetate decarboxylase [Hydrogenivirga sp. 128-5-R1-1]
 gi|159883179|gb|EDP76683.1| oxaloacetate decarboxylase [Hydrogenivirga sp. 128-5-R1-1]
          Length = 441

 Score =  333 bits (854), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 185/449 (41%), Positives = 280/449 (62%), Gaps = 19/449 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +++F+K++GCQMN  DS R+  +  + GYE   S ++ADLI+LNTC IREK  +KV S +
Sbjct: 3   KKYFIKTFGCQMNFNDSERIRGILRTLGYEPAESWEEADLILLNTCTIREKPDQKVLSHI 62

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           G  + +K    +   + L+ V+GC+AQ  G E+++++P V+++      ++LPEL+ +A+
Sbjct: 63  GEYKKIK----ERNPNALIAVSGCLAQRAGWELVQKAPAVDIMFSSFNMHQLPELINQAQ 118

Query: 145 FG-KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            G K V   +   ED+    ++ D    R     A++TI +GCDK CT+CVVP TRG E 
Sbjct: 119 AGYKAVAILEAPPEDED---AVWDFPTERDNPYCAYVTIIKGCDKNCTYCVVPKTRGKER 175

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK-CTFSDLLYSLSEIKGLVR 262
           SRS+  +++E +KL+D GV EI LLGQNV AW   G D E+   FS+LLY +S++ G+ R
Sbjct: 176 SRSMYSILEEVKKLVDEGVREIHLLGQNVTAW---GKDFERPIPFSELLYEVSKVDGVER 232

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TT HP+D++D  ++A  D+  +   LHLP Q+GSDRIL+ M+R++T   Y   I+R+
Sbjct: 233 IRFTTGHPKDLTDDTVEAMADIPQVCNALHLPFQAGSDRILELMDRKYTKEFYLDRINRL 292

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           +    DIA+S+D IVGFP ETD+DF  T+D+V ++ + Q FSFKYSPR GTP + M  QV
Sbjct: 293 KEAVEDIALSTDIIVGFPTETDEDFEHTLDVVREVEFEQVFSFKYSPRPGTPAAEMEGQV 352

Query: 383 DENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV 439
            + VK E   RLL LQK +  +    +    G + +VL+E+   E G L+GR+   +   
Sbjct: 353 PDEVKTERMSRLLELQKAIMGK---LSKRYEGTVQKVLVEEERGE-GTLIGRTTTNKWAT 408

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  +G I+KVR+       L  EL+
Sbjct: 409 FKGGRELLGKIVKVRVESASPFNLECELL 437


>gi|320353884|ref|YP_004195223.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Desulfobulbus propionicus
           DSM 2032]
 gi|320122386|gb|ADW17932.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Desulfobulbus propionicus
           DSM 2032]
          Length = 450

 Score =  333 bits (854), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 179/452 (39%), Positives = 271/452 (59%), Gaps = 15/452 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +  ++K++GCQMN  DS  ME M   +GY    S + AD++++NTC IREKA +KV+S L
Sbjct: 3   KNLYIKTFGCQMNERDSEIMEQMLAQEGYVPAASPEGADVVLINTCSIREKAEQKVFSLL 62

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           G++R  K         LL+ V GCVAQ EGE I  R P V+++VG Q  Y+LPE+L R  
Sbjct: 63  GQLREEK----ARNPSLLLGVTGCVAQQEGERIRERMPHVDLIVGTQQIYQLPEMLARLT 118

Query: 145 FGKRVVDTDYSVE-----DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
            G    +T   +E       F++L I             F+TI +GC+ +C++CVVP TR
Sbjct: 119 QGMTTRETATDLEGSFAIPPFQKLLINTPPSPAPHSFRRFVTIMQGCNNYCSYCVVPGTR 178

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-RGKGLDGEKCTFSDLLYSLSEIK 258
           G EISR ++ +++E   L+  GV EITLLGQNVN++ +   +   +  F  LL  ++ + 
Sbjct: 179 GREISRPVADIMEEVEILVSQGVKEITLLGQNVNSYGKTNKVADTEVDFPQLLRQVALVN 238

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           GL RLR+TTSHP+D+S+ L++   ++D+L P+ HLPVQSGS+ +L+ MNR++T   Y + 
Sbjct: 239 GLRRLRFTTSHPKDLSEALMRCFAEIDILCPHFHLPVQSGSNAVLQRMNRKYTVENYLEK 298

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           +  +R + PDIA+++D IVGFPGET+ DF+ATMDL+  + +  +FSFKYS R  T  +  
Sbjct: 299 VASLRRLCPDIALATDIIVGFPGETEADFQATMDLLQTVRFHGSFSFKYSDRPHTRSAEF 358

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSV 438
            +++ E VKA RL+  Q       +  N   +G+ +EV++E    E  +L GR+P  Q V
Sbjct: 359 SDKIPEEVKARRLMEFQSLQDSISLERNSESIGREVEVMVE--SGEGNRLRGRTPANQIV 416

Query: 439 VLNSKNHN---IGDIIKVRITDVKISTLYGEL 467
              +   +    G + +V+I      +L G L
Sbjct: 417 HFTAAPASSLIPGTLARVQIDHAGKHSLKGTL 448


>gi|331269503|ref|YP_004395995.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Clostridium botulinum
           BKT015925]
 gi|329126053|gb|AEB75998.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Clostridium botulinum
           BKT015925]
          Length = 452

 Score =  333 bits (853), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 174/448 (38%), Positives = 282/448 (62%), Gaps = 15/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +RFF+ ++GCQMN  DS ++  +    GY R +  DDAD+++ NTC +RE A +KVY  L
Sbjct: 16  KRFFISTWGCQMNEEDSEKISGLLKGIGYTRTDIRDDADVVIFNTCCVRENAEQKVYGHL 75

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G ++ LK    ++  DL+++V GC+ Q +G  E+++ + P V+++ G    Y+LPE +ER
Sbjct: 76  GELKALK----RKNPDLILIVTGCMMQQKGMPEKVMEKFPHVDIIAGTYNSYKLPEYIER 131

Query: 143 ARF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
            +  GK +++     +D  E L +     +RK  + AF+TI  GC+ FC++C+VPY RG 
Sbjct: 132 VKTEGKSIIEIWDKEKDIVEGLPV-----DRKSDIKAFVTIMYGCNNFCSYCIVPYVRGR 186

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR    ++DE + L+  G  EITLLGQNVN++ GKGL  E   F+DLL  +++I+GL 
Sbjct: 187 ERSRDPQNIIDEIKDLVSKGYKEITLLGQNVNSY-GKGLTPE-MNFADLLRMVNKIEGLE 244

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+ TSHP+D+SD LIKA  + + +    H  +QSGS +IL+ MNR++T  +Y  ++ +
Sbjct: 245 RIRFMTSHPKDVSDELIKAMAECEKVCEQGHFALQSGSTKILEKMNRKYTREDYLNLVKK 304

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R+  P++ IS+D IVG+PGET++DF+ T+ +V +I +  AF+F YS R GTP +   +Q
Sbjct: 305 LRAAMPNVGISTDIIVGYPGETEEDFQETLSIVKEIEFDSAFTFIYSKREGTPAAKHEDQ 364

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVL 440
           V ++VK  R   L + + E     N    G+++EVL+E   K +  KL+GR+   + V  
Sbjct: 365 VPDDVKHVRFNRLVEAINEIMSRKNKKFDGEVVEVLVEGPSKNDDTKLMGRTRTGKLVNF 424

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
           +    N+G ++ ++IT     +L GE++
Sbjct: 425 DGDISNVGKLVNIKITKANSFSLTGEII 452


>gi|85859266|ref|YP_461468.1| tRNA 2-methylthioadenosine synthase [Syntrophus aciditrophicus SB]
 gi|123725257|sp|Q2LT94|MIAB_SYNAS RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|85722357|gb|ABC77300.1| tRNA 2-methylthioadenosine synthase [Syntrophus aciditrophicus SB]
          Length = 461

 Score =  332 bits (852), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 181/446 (40%), Positives = 282/446 (63%), Gaps = 12/446 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +  ++++ GCQMNV+DS ++  +   +GY      ++ADLI+LNTC IREKAA+K  S L
Sbjct: 18  KHIYIQTLGCQMNVHDSEQIAALMEEKGYICTEDANEADLIILNTCSIREKAAQKAKSQL 77

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER-A 143
           GR RNLK  +     +LL+ V GC+AQ  G+E+L + P ++ + G    ++LP+ + R  
Sbjct: 78  GRYRNLKRKK----RNLLIGVGGCLAQQLGDELLTKVPDIDFIFGTHNIHQLPDFISRIE 133

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           +  K++V+T  ++      + ++    N +  V++F+TI +GC+ FC++C+VPY RG E 
Sbjct: 134 KSRKKIVET--TLHPSTPSIGVLALPCNGQ--VSSFVTIMQGCNNFCSYCIVPYVRGREE 189

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR    ++ E R L D+GV E+TLLGQNVN++  +   GE   F++LL  + +IKG+ R+
Sbjct: 190 SRPPEDIIHEIRMLADHGVKEVTLLGQNVNSY-ARKTSGE-MGFAELLREIEKIKGIERM 247

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+TTSHP+D+S+ LI A  DL  L  ++HLP QSGSDRIL  MNR +T  +Y   ++R+R
Sbjct: 248 RFTTSHPKDLSEFLITAFSDLSKLCHHIHLPFQSGSDRILALMNRGYTKSDYLAKVERLR 307

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           +V PDI+I++D IVGFPGE+D+DF+ T+D++++I +   FSFKYS R GT    M  +V 
Sbjct: 308 TVCPDISITADVIVGFPGESDEDFKETIDMMNQIRFDNLFSFKYSEREGTAAVKMDGKVS 367

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRSPWLQSVVLNS 442
           E +K ERL  LQ    +  +  N A  G+  +VL+E   K  +  L GR+   + V  + 
Sbjct: 368 EPLKLERLQILQALQEQHTLEKNKAMEGKQEDVLVEGFSKNCRKDLTGRTSTNKIVNFSG 427

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
               IGD++ V I +  + +L GE++
Sbjct: 428 CVDLIGDMVSVLIKEAYLHSLRGEML 453


>gi|289578350|ref|YP_003476977.1| RNA modification enzyme, MiaB family [Thermoanaerobacter italicus
           Ab9]
 gi|289528063|gb|ADD02415.1| RNA modification enzyme, MiaB family [Thermoanaerobacter italicus
           Ab9]
          Length = 471

 Score =  332 bits (850), Expect = 9e-89,   Method: Compositional matrix adjust.
 Identities = 186/449 (41%), Positives = 282/449 (62%), Gaps = 21/449 (4%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           + +++YGCQMNV+DS ++  M    GY+   +++ AD+++ NTC +RE A  +V   LGR
Sbjct: 33  YHIETYGCQMNVHDSEKLAGMLEKMGYKYTENLEQADVLLFNTCAVREHAEIRV---LGR 89

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           +  +K  + +   +L++ V+GC+ Q +   E I  +   +++V G    Y+ P+LL  A 
Sbjct: 90  VSQMKELKAR-NPNLIIGVSGCMMQEKNVVEAIKEKYSYIDIVFGTHNIYKFPQLLWEAL 148

Query: 145 FGKRVV-DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             + +V D     ++  E L +      R   + A++ I  GC+ FCT+C+VPYTRG E 
Sbjct: 149 NSQDIVIDVIEDTKNVIEELPV-----KRDSNLKAWVNIIYGCNNFCTYCIVPYTRGREK 203

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR    +V E ++L   G  EITLLGQNVN++ GK LD E  TF+ LLY L+EI+G+ R+
Sbjct: 204 SRKPEDIVAEVKELAQKGYKEITLLGQNVNSY-GKDLD-EDITFAKLLYKLNEIEGIERI 261

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+ TSHP+D+SD LI A  DL+ +  +LHLPVQ+GS++ILK MNR++T   Y +IID++R
Sbjct: 262 RFMTSHPKDISDELIYAMRDLNKVCEHLHLPVQAGSNKILKKMNRKYTKEHYLEIIDKVR 321

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           S  PDIAI++D IVGFPGET++DF  T+DLV+++ +  A++F YS R GT  +NM +QVD
Sbjct: 322 SNIPDIAITTDIIVGFPGETEEDFLETLDLVERVRFDAAYTFIYSKRAGTVAANMPDQVD 381

Query: 384 ENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVV 439
           + VK    ERL+ LQ K+  ++ +      G+I+EVLIE   K +  KL  R+   + V 
Sbjct: 382 DAVKHERLERLIELQNKISLEKSA---ELRGKIVEVLIEGISKRDSNKLTSRTRTNKVVH 438

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG +  ++IT+ K  T+ GELV
Sbjct: 439 FVGDESLIGKLANIKITETKAWTMQGELV 467


>gi|307267463|ref|ZP_07548950.1| RNA modification enzyme, MiaB family [Thermoanaerobacter wiegelii
           Rt8.B1]
 gi|306917520|gb|EFN47807.1| RNA modification enzyme, MiaB family [Thermoanaerobacter wiegelii
           Rt8.B1]
          Length = 471

 Score =  332 bits (850), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 185/449 (41%), Positives = 283/449 (63%), Gaps = 21/449 (4%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           + +++YGCQMNV+DS ++  M    GY+   +++ AD+++ NTC +RE A  +V   LGR
Sbjct: 33  YHIETYGCQMNVHDSEKLAGMLEKMGYKYTENLEQADVLLFNTCAVREHAEIRV---LGR 89

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           +  +K  + +   +L++ V+GC+ Q +   E I  +   +++V G    Y+ P+LL  A 
Sbjct: 90  VSQMKELKAR-NPNLIIGVSGCMMQEKNVVEAIKEKYSYIDIVFGTHNIYKFPQLLWEAL 148

Query: 145 FGKRVV-DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             + +V D     ++  E L +      R   + A++ I  GC+ FCT+C+VPYTRG E 
Sbjct: 149 NSQDIVIDIIEDTKNVIEELPV-----KRDSNLKAWVNIIYGCNNFCTYCIVPYTRGREK 203

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR    ++ E ++L   G  EITLLGQNVN++ GK LD E  TF+ LLY L++I+G+ R+
Sbjct: 204 SRKPEDIIAEVKELAQKGYKEITLLGQNVNSY-GKDLD-EDITFAKLLYKLNDIEGIERI 261

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+ TSHP+D+SD LI A  DLD +  +LHLPVQ+GS++ILK MNR++T   Y +IID++R
Sbjct: 262 RFMTSHPKDISDELIYAIRDLDKVCEHLHLPVQAGSNKILKKMNRKYTKEHYLEIIDKVR 321

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           S  PDIAI++D IVGFPGET++DF  T+DLV+++ +  A++F YS R GT  +NM +QVD
Sbjct: 322 SNIPDIAITTDIIVGFPGETEEDFLETLDLVERVRFDAAYTFIYSKRAGTVAANMPDQVD 381

Query: 384 ENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVV 439
           + +K    ERL+ LQ K+  ++ +      G+I+EVLIE   K +  KL  R+   + V 
Sbjct: 382 DAIKHERLERLIELQNKISLEKSA---ELRGKIVEVLIEGISKRDSNKLTSRTRTNKVVH 438

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG ++ V+IT+ K  T+ GELV
Sbjct: 439 FVGDESLIGKLVNVKITETKAWTMQGELV 467


>gi|297544628|ref|YP_003676930.1| MiaB family RNA modification protein [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
 gi|296842403|gb|ADH60919.1| RNA modification enzyme, MiaB family [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
          Length = 471

 Score =  332 bits (850), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 186/449 (41%), Positives = 281/449 (62%), Gaps = 21/449 (4%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           + +++YGCQMNV+DS ++  M    GY+   +++ AD+++ NTC +RE A  +V   LGR
Sbjct: 33  YHIETYGCQMNVHDSEKLAGMLEKMGYKYTENLEQADVLLFNTCAVREHAEIRV---LGR 89

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           +  +K  + +   +L++ V+GC+ Q +   E I  +   +++V G    Y+ P+LL  A 
Sbjct: 90  VSQMKELKAR-NPNLIIGVSGCMMQEKNVVEAIKEKYSYIDIVFGTHNIYKFPQLLWEAL 148

Query: 145 FGKRVV-DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             + +V D     ++  E L +      R   + A++ I  GC+ FCT+C+VPYTRG E 
Sbjct: 149 NSQDIVIDVIEDTKNVIEELPV-----KRDSNLKAWVNIIYGCNNFCTYCIVPYTRGREK 203

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR    +V E ++L   G  EITLLGQNVN++ GK LD E  TF+ LLY L+EI+G+ R+
Sbjct: 204 SRKPEDIVAEVKELAQKGYKEITLLGQNVNSY-GKDLD-ENITFAKLLYKLNEIEGIERI 261

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+ TSHP+D+SD LI A  DL+ +  +LHLPVQ+GS++ILK MNR++T   Y +IID++R
Sbjct: 262 RFMTSHPKDISDELIYAMRDLNKVCEHLHLPVQAGSNKILKKMNRKYTKEHYLEIIDKVR 321

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           S  PDIAI++D IVGFPGET++DF  T+DLV ++ +  A++F YS R GT  +NM +QVD
Sbjct: 322 SNIPDIAITTDIIVGFPGETEEDFLETLDLVQRVRFDAAYTFIYSKRAGTVAANMPDQVD 381

Query: 384 ENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVV 439
           + VK    ERL+ LQ K+  ++ +      G+I+EVLIE   K +  KL  R+   + V 
Sbjct: 382 DAVKHERLERLIELQNKISLEKSA---ELRGKIVEVLIEGISKRDSNKLTSRTRTNKVVH 438

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG +  ++IT+ K  T+ GELV
Sbjct: 439 FVGDESLIGKLANIKITETKAWTMQGELV 467


>gi|167040247|ref|YP_001663232.1| (dimethylallyl)adenosine tRNA methylthiotransferase
           [Thermoanaerobacter sp. X514]
 gi|256750831|ref|ZP_05491716.1| RNA modification enzyme, MiaB family [Thermoanaerobacter
           ethanolicus CCSD1]
 gi|300914331|ref|ZP_07131647.1| RNA modification enzyme, MiaB family [Thermoanaerobacter sp. X561]
 gi|307724433|ref|YP_003904184.1| RNA modification enzyme, MiaB family [Thermoanaerobacter sp. X513]
 gi|229891016|sp|B0K1A1|MIAB_THEPX RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|166854487|gb|ABY92896.1| RNA modification enzyme, MiaB family [Thermoanaerobacter sp. X514]
 gi|256750414|gb|EEU63433.1| RNA modification enzyme, MiaB family [Thermoanaerobacter
           ethanolicus CCSD1]
 gi|300889266|gb|EFK84412.1| RNA modification enzyme, MiaB family [Thermoanaerobacter sp. X561]
 gi|307581494|gb|ADN54893.1| RNA modification enzyme, MiaB family [Thermoanaerobacter sp. X513]
          Length = 471

 Score =  332 bits (850), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 186/449 (41%), Positives = 282/449 (62%), Gaps = 21/449 (4%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           + +++YGCQMNV+DS ++  M    GY+   +++ AD+++ NTC +RE A  +V   LGR
Sbjct: 33  YHIETYGCQMNVHDSEKLAGMLEKMGYKYTENLEQADVLLFNTCAVREHAEIRV---LGR 89

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           +  +K  + +   +L++ V+GC+ Q +   E I  +   +++V G    Y+ P+LL  A 
Sbjct: 90  VSQMKELKAR-NPNLIIGVSGCMMQEKNVVEAIKEKYSYIDIVFGTHNIYKFPQLLWEAL 148

Query: 145 FGKRVV-DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             + +V D     ++  E L +      R   + A++ I  GC+ FCT+C+VPYTRG E 
Sbjct: 149 NSQDIVIDIIEDTKNVIEELPV-----KRDSNLKAWVNIIYGCNNFCTYCIVPYTRGREK 203

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR    ++ E ++L   G  EITLLGQNVN++ GK LD E  TF+ LLY L++I+G+ R+
Sbjct: 204 SRKPEDIIAEVKELAQKGYKEITLLGQNVNSY-GKDLD-EDITFAKLLYKLNDIEGIERI 261

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+ TSHP+D+SD LI A  DLD +  +LHLPVQ+GS++ILK MNR++T   Y +IID++R
Sbjct: 262 RFMTSHPKDISDELIYAMRDLDKVCEHLHLPVQAGSNKILKKMNRKYTKEHYLEIIDKVR 321

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           S  PDIAI++D IVGFPGET++DF  T+DLV+++ +  A++F YS R GT  +NM +QVD
Sbjct: 322 SNIPDIAITTDIIVGFPGETEEDFLETLDLVERVRFDAAYTFIYSKRAGTVAANMPDQVD 381

Query: 384 ENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVV 439
           + VK    ERL+ LQ K+  ++ +      G+I+EVLIE   K +  KL  R+   + V 
Sbjct: 382 DAVKHERLERLIELQNKISLEKSA---ELRGKIVEVLIEGISKRDSNKLTSRTRTNKVVH 438

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG +  V+IT+ K  T+ GELV
Sbjct: 439 FVGDESLIGKLANVKITETKAWTMQGELV 467


>gi|116625754|ref|YP_827910.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Candidatus Solibacter
           usitatus Ellin6076]
 gi|122252074|sp|Q01RU5|MIAB_SOLUE RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|116228916|gb|ABJ87625.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Candidatus Solibacter
           usitatus Ellin6076]
          Length = 445

 Score =  332 bits (850), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 182/449 (40%), Positives = 274/449 (61%), Gaps = 26/449 (5%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           F+++++GCQMN +DS ++     ++GYE+V + + A+L+  NTC IR+KA +KV++   R
Sbjct: 9   FYIETFGCQMNAHDSEKVVGTLLAEGYEQVATPEAAELVFYNTCSIRDKAEQKVFN---R 65

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           ++N K   +K  G +  V+ GCVAQ EGE+I  R+P V++V G  +Y RLPE+L +   G
Sbjct: 66  LQNFKREGMK--GKIFGVL-GCVAQQEGEKIFDRAPHVSLVAGSASYTRLPEMLVQLEAG 122

Query: 147 KRVV-----DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
            R V     DT+ + +  F R         R     A+LTI EGCDK C +CVVP+TRG 
Sbjct: 123 NRRVTGLSLDTEETFDTPFTR---------RDNPHRAYLTIIEGCDKACAYCVVPFTRGP 173

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR+   V+ EAR L + G  E+ LLGQNVN++R     G    F+ LL  ++EI G+ 
Sbjct: 174 ERSRTSESVMAEARGLTEKGYTEVQLLGQNVNSYRDPSPAG--WDFATLLAKVAEIPGMR 231

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+RYTTSHPRD    ++ A    + +  ++HLPVQSGS ++L +M+R +T  EY + ID 
Sbjct: 232 RVRYTTSHPRDFVRPIVDAMDANEAICDHIHLPVQSGSSKVLAAMDRLYTRDEYLRRIDW 291

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I+S +   ++++D I+GFPGETD DF  T+DL+D++ Y   FSFKYSPR  T    M ++
Sbjct: 292 IKSAKRRYSLTTDIIIGFPGETDADFEQTLDLLDEVQYDSLFSFKYSPRPNTSALAMEDR 351

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           + E  K  RLL LQ+K R  Q+  N   +G I EVL+E   +  G+ +GR+   +++  +
Sbjct: 352 IPEEEKQRRLLTLQEKQRAIQIRRNAEMIGSIQEVLVEGRNQALGQWIGRTTCNRTLNFS 411

Query: 442 SKNHN----IGDIIKVRITDVKISTLYGE 466
             + N    +G  + VR+T    ++L GE
Sbjct: 412 HPDTNGNELVGKYLPVRVTRSGPNSLVGE 440


>gi|311086171|gb|ADP66253.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Buchnera
           aphidicola str. LL01 (Acyrthosiphon pisum)]
 gi|311087332|gb|ADP67412.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Buchnera
           aphidicola str. JF99 (Acyrthosiphon pisum)]
          Length = 427

 Score =  331 bits (849), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 178/435 (40%), Positives = 266/435 (61%), Gaps = 12/435 (2%)

Query: 36  MNVYDSLRMEDMFFSQG-YERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSR 94
           MN YDS  +  +      Y    S ++AD+++LNTC IREKA EKV+  LGR + +KN+ 
Sbjct: 1   MNEYDSSMIITLLEKNNQYSLTKSAENADILILNTCSIREKAQEKVFHQLGRWKKIKNNN 60

Query: 95  IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV-VDTD 153
            K    +++ V GCVA  EG+EI +R+  V+++ G QT +RLP++++     +++ +D  
Sbjct: 61  PK----VIIAVGGCVATQEGKEIFKRANYVDIIFGTQTLHRLPKMIDEVEKKRKLSIDIS 116

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           +   +KF+          +K+G TA ++I EGC+K+C+FCVVPYTRG EISR    V+ E
Sbjct: 117 FPKLEKFKYFLAP-----KKKGYTADISIMEGCNKYCSFCVVPYTRGNEISRPCDDVLFE 171

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
              L   G+ EI LLGQNVNA++G   +G+ C FS+L+  ++EI G+ R+R+TTS+P + 
Sbjct: 172 ISLLAKQGIKEINLLGQNVNAYQGPTFNGKVCYFSELIRLVAEIDGIERIRFTTSNPLEF 231

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
           +D +I+ + D   L+ +LHLPVQSGS++IL  M R +T  +Y  II ++   RPDI ISS
Sbjct: 232 TDDIIEVYKDTPKLVSFLHLPVQSGSNKILNLMKRSYTTEDYTSIIKKLTIARPDIQISS 291

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLC 393
           DFIVGFPGE++ DF  T++ +  I +  +FSF YS R GTP SNM + +D   K  RL  
Sbjct: 292 DFIVGFPGESEIDFEKTIEFIKNINFDMSFSFIYSARPGTPASNMNDNLDLKEKKRRLYI 351

Query: 394 LQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIK 452
           LQ+++  Q + ++    G I  VL+E    K    L GR+   + V     +  IG  + 
Sbjct: 352 LQERINIQTMLWSRKMFGSIQSVLVEGVSDKNIMDLYGRTENNRVVTFQGSSEMIGQFVN 411

Query: 453 VRITDVKISTLYGEL 467
           V+I  V   +L GEL
Sbjct: 412 VKIKKVHTHSLKGEL 426


>gi|308272044|emb|CBX28652.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [uncultured Desulfobacterium sp.]
          Length = 471

 Score =  331 bits (848), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 170/368 (46%), Positives = 247/368 (67%), Gaps = 11/368 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +  ++ ++GCQMNVYDS ++       GYE   S+D+ADLI++NTC IREKA +K +SF 
Sbjct: 4   KSLYINTFGCQMNVYDSQQIISQLNPIGYEVSESLDEADLIIVNTCAIREKAQQKAFSFF 63

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPE-LLERA 143
           GR+  LK  R K G  L++   GCVAQ EG+ IL R   +++V G     RLPE ++  +
Sbjct: 64  GRLAVLK--RKKPG--LIICAGGCVAQQEGKRILERFSYIDLVFGTHALKRLPEHIINIS 119

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           +   R+ D + + ++  E  S+     N    VT F+TI  GCD +CT+CVVP+ RG EI
Sbjct: 120 KKRCRISDVEMT-DEILEFPSVASQVTNNI--VTRFVTIMRGCDNYCTYCVVPHVRGPEI 176

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR    ++DE RKL+D+GV E+TLLGQNVN++   G+    C+F +LL  +SE +GL R+
Sbjct: 177 SRKPEHIIDEIRKLVDSGVQEVTLLGQNVNSY---GIKEGLCSFPELLRLVSETEGLFRI 233

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+TTSHP+D+S  L+ A  DLD L  ++HLPVQSGS+ ILK MNR++T   Y + ID++R
Sbjct: 234 RFTTSHPKDLSQELVFAFRDLDKLCNHIHLPVQSGSNNILKRMNRKYTRELYLEKIDKLR 293

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
            + PDIAI+SD IVGFPGET+DDF+AT+DLV ++ +   F+F+YS R+  P +   +++ 
Sbjct: 294 KISPDIAITSDVIVGFPGETEDDFKATLDLVKEVEFDSLFTFEYSDRIKAPAAKFSDKIS 353

Query: 384 ENVKAERL 391
           +++K  RL
Sbjct: 354 DDIKNGRL 361


>gi|310821577|ref|YP_003953935.1| tRNA-i(6)a37 thiotransferase enzyme miab [Stigmatella aurantiaca
           DW4/3-1]
 gi|309394649|gb|ADO72108.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Stigmatella aurantiaca
           DW4/3-1]
          Length = 467

 Score =  331 bits (848), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 192/450 (42%), Positives = 276/450 (61%), Gaps = 25/450 (5%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +R+F+ ++GCQMNV DSLRM +      Y    + D+ADLI+LNTC IREKA +K+ S L
Sbjct: 2   KRYFIHTFGCQMNVNDSLRMSEALAQIAYAPTPTPDNADLIILNTCAIREKAEDKMLSAL 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER-A 143
           GR R +K SR       L+ V GCVAQ E + +L++ P V+ V GP    +LPE++ R +
Sbjct: 62  GRYRPVKVSR-----GALIGVGGCVAQQEKDRLLKKVPYVDFVFGPDNIGKLPEIITRVS 116

Query: 144 RFGKRVVDTDY--SVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           +  +RVV+T +  S E  F R    D   +R + VT F+T+ +GCD  C+FCVVP+TRG 
Sbjct: 117 QERERVVETAFVDSEEYVFPR---ADPETSRGK-VTEFVTVMKGCDNVCSFCVVPHTRGR 172

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E+SR+   V+ E   L   G+ E+TL+GQNVN++RG        +F+ LL   +E+ G+ 
Sbjct: 173 EVSRAFPDVLTEVADLARVGLREVTLIGQNVNSYRGG------ISFAQLLLRTAEVPGIE 226

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHP D+SD LI A      + P+ HLPVQ GSDRILK M R +T  +Y + +++
Sbjct: 227 RVRFTTSHPHDLSDELIDAFRTQPKIAPHFHLPVQCGSDRILKMMRRDYTVVQYLERLEK 286

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R+ RP IA+++D IVGFPGET++DF  TM L +++ Y   FSF +SPR  T G+ + E+
Sbjct: 287 LRAARPGIAVTTDIIVGFPGETEEDFEMTMQLTEQVRYESQFSFIFSPRPKT-GAALREK 345

Query: 382 ----VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQ 436
               V   VK  RL  LQK  R+       + VG  +EVL+E H K + GK  GRSP  +
Sbjct: 346 DWGSVPHEVKIARLERLQKVQRKICGEIAVSQVGLEVEVLVEGHSKYDAGKRFGRSPENR 405

Query: 437 SVVLNSKNHNIGDIIKVRITDVKISTLYGE 466
           +V  +  +   G I+KV +     + L G+
Sbjct: 406 TVNFDG-DAPAGAIVKVLVDRATPNHLMGK 434


>gi|167037585|ref|YP_001665163.1| (dimethylallyl)adenosine tRNA methylthiotransferase
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|320116000|ref|YP_004186159.1| MiaB family RNA modification protein [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
 gi|326389400|ref|ZP_08210967.1| RNA modification enzyme, MiaB family [Thermoanaerobacter
           ethanolicus JW 200]
 gi|229891015|sp|B0K9L4|MIAB_THEP3 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|166856419|gb|ABY94827.1| RNA modification enzyme, MiaB family [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|319929091|gb|ADV79776.1| RNA modification enzyme, MiaB family [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
 gi|325994405|gb|EGD52830.1| RNA modification enzyme, MiaB family [Thermoanaerobacter
           ethanolicus JW 200]
          Length = 471

 Score =  331 bits (848), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 186/449 (41%), Positives = 282/449 (62%), Gaps = 21/449 (4%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           + +++YGCQMNV+DS ++  M    GY+   +++ AD+++ NTC +RE A  +V   LGR
Sbjct: 33  YHIETYGCQMNVHDSEKLAGMLEKMGYKYTENLEQADVLLFNTCAVREHAEIRV---LGR 89

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           +  +K  + +   +L++ V+GC+ Q +   E I  +   +++V G    Y+ P+LL  A 
Sbjct: 90  VSQMKELKAR-NPNLIIGVSGCMMQEKNVVEAIKEKYSYIDIVFGTHNIYKFPQLLWEAL 148

Query: 145 FGKRVV-DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             + +V D     ++  E L +      R   + A++ I  GC+ FCT+C+VPYTRG E 
Sbjct: 149 NSQDIVIDIIEDTKNVIEELPV-----KRDSNLKAWVNIIYGCNNFCTYCIVPYTRGREK 203

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR    ++ E ++L   G  EITLLGQNVN++ GK LD E  TF+ LLY L++I+G+ R+
Sbjct: 204 SRKPEDIIAEVKELAQKGYKEITLLGQNVNSY-GKDLD-EDITFAKLLYKLNDIEGIERI 261

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+ TSHP+D+SD LI A  DLD +  +LHLPVQ+GS++ILK MNR++T   Y +IID++R
Sbjct: 262 RFMTSHPKDISDELIYAIRDLDKVCEHLHLPVQAGSNKILKKMNRKYTKEHYLEIIDKVR 321

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           S  PDIAI++D IVGFPGET++DF  T+DLV+++ +  A++F YS R GT  +NM +QVD
Sbjct: 322 SNIPDIAITTDIIVGFPGETEEDFLETLDLVERVRFDAAYTFIYSKRAGTVAANMPDQVD 381

Query: 384 ENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVV 439
           + VK    ERL+ LQ K+  ++ +      G+I+EVLIE   K +  KL  R+   + V 
Sbjct: 382 DAVKHERLERLIELQNKISLEKSA---ELRGKIVEVLIEGISKRDSNKLTSRTRTNKVVH 438

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG +  V+IT+ K  T+ GELV
Sbjct: 439 FVGDESLIGKLANVKITETKAWTMQGELV 467


>gi|158320587|ref|YP_001513094.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Alkaliphilus oremlandii
           OhILAs]
 gi|229890436|sp|A8MFD5|MIAB_ALKOO RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|158140786|gb|ABW19098.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Alkaliphilus oremlandii
           OhILAs]
          Length = 471

 Score =  330 bits (847), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 180/449 (40%), Positives = 279/449 (62%), Gaps = 17/449 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +++ + +YGCQMN +DS  +  M  + GY    + ++A+LI+ NTC +RE A  KVY  +
Sbjct: 33  KKYMITTYGCQMNEHDSETLSGMLENMGYSITTNKEEANLIIYNTCCVRENAELKVYGNI 92

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G ++ LK    K+  DL++ V GC+ Q     +EI R+   V++V G    YR PELL R
Sbjct: 93  GALKALK----KKNEDLIIAVCGCMMQQPQVVKEIKRKYRHVDLVFGTHNLYRFPELLSR 148

Query: 143 ARFGKRVVDTD-YSVEDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           +      ++T+   +E   E   IV+G   NRK  +  F+ I  GC+ FCT+C+VPYTRG
Sbjct: 149 S------METEGMFIEVWDEETGIVEGLPANRKYDLKGFINIMYGCNNFCTYCIVPYTRG 202

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E SR ++ ++ EA  L +NG  EITLLGQNVN++ GK L+     F+DLL +L++I G+
Sbjct: 203 RERSREVADIIREATDLANNGTKEITLLGQNVNSY-GKTLE-HPIDFADLLRALNKIDGI 260

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+ TSHP+D+S+ LI A  + D +  + HLP QSGS++ILK+MNR++T   Y  I+ 
Sbjct: 261 ERIRFMTSHPKDLSERLIDAIAECDKVCEHFHLPFQSGSNQILKAMNRKYTKENYLSIVK 320

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           +++   P+I +++D IVGFPGET++DF+ T+D+V +  Y  A++F YS R GTP + M  
Sbjct: 321 KLKDRIPNIGLTTDIIVGFPGETEEDFQDTLDIVQEARYDSAYTFLYSIREGTPAAKMQN 380

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVV 439
           Q+DE VK ER   L  K+ E     N + + +++EVL+E   K +  KL+GR+   + V 
Sbjct: 381 QIDEKVKQERFSRLLDKVNEISAEINQSYLNKVVEVLVEGPSKTDSNKLMGRTRQNKLVN 440

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
            +     IG ++ VRI + +  +L GE++
Sbjct: 441 FSGDESLIGKLVNVRIVECRTFSLNGEVI 469


>gi|312135300|ref|YP_004002638.1| tRNA-i(6)a37 thiotransferase enzyme miab [Caldicellulosiruptor
           owensensis OL]
 gi|311775351|gb|ADQ04838.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Caldicellulosiruptor
           owensensis OL]
          Length = 471

 Score =  330 bits (847), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 173/447 (38%), Positives = 277/447 (61%), Gaps = 14/447 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +++ + +YGCQMNV+DS ++  M  + GY    ++ +ADLI+ NTC +RE A  +VY  +
Sbjct: 36  KKYHIVTYGCQMNVHDSEKLAGMLNAMGYIETENIQEADLIIFNTCSVREHAESRVYGNI 95

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQA--EGEEILRRSPIVNVVVGPQTYYRLPELLER 142
           G ++ LK+ +     DL++ V GC+ Q     +++ +  P ++++ G ++ ++ P+LL  
Sbjct: 96  GPLKRLKDKK----PDLIIGVCGCMPQQLEVAQKLAKLFPFLDIIFGTKSLHKFPQLLYT 151

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           A   KR V      ED      +V+G    RK+GV+AF+ I  GC+ FC++C+VPY RG 
Sbjct: 152 AITEKRTVIDVSENED-----VVVEGIPTARKQGVSAFVNIIYGCNNFCSYCIVPYVRGR 206

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR   +++ E  +L  NGV E+TLLGQNVN++    ++G   TF  LL  ++EIKG+ 
Sbjct: 207 ERSRRPEEIIYEIEQLAQNGVKEVTLLGQNVNSYGKDLVNG--ITFPKLLEKINEIKGIE 264

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+ TSHP+D+S+ LI A  DL+ +  ++HLPVQSGS RILK+MNR +T  +Y +++++
Sbjct: 265 RIRFVTSHPKDLSNELIAAMRDLEKVCEHIHLPVQSGSTRILKAMNRHYTKEDYLRLVEK 324

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +++  PDIAI++D IVGFPGETD+DF  T+D+  K+ +  A++F YS R GTP   M  Q
Sbjct: 325 LKTNIPDIAITTDIIVGFPGETDEDFEDTLDVCKKVEFDSAYTFIYSKRRGTPAEKMPNQ 384

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           V +N+K +R   L K + E  +  N   +G+  E+LI+   K    LVGR+   + V + 
Sbjct: 385 VPDNIKHQRFQRLVKLVEEIALKKNKQMLGKTYEILIDGRSKRNNLLVGRTRTNKVVNVK 444

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                +   + V+I +     LYGE++
Sbjct: 445 CPEEYMFKFVNVKILEAAEHWLYGEVI 471


>gi|322435958|ref|YP_004218170.1| RNA modification enzyme, MiaB family [Acidobacterium sp. MP5ACTX9]
 gi|321163685|gb|ADW69390.1| RNA modification enzyme, MiaB family [Acidobacterium sp. MP5ACTX9]
          Length = 440

 Score =  330 bits (846), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 180/445 (40%), Positives = 272/445 (61%), Gaps = 19/445 (4%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           F+++++GCQMN +DS ++      QGY +V    +A LI+ NTC IR+KA +KV+  L  
Sbjct: 5   FYIETFGCQMNAHDSEKVVGTLEQQGYAQVQDEAEAGLILYNTCSIRDKAEQKVFHRLNE 64

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
            + ++     EG    V+  GCVAQ EGE+I  R+P V++V G  +Y  LP +LER   G
Sbjct: 65  YKKMQG----EGKRFAVI--GCVAQQEGEKIFDRAPYVSIVAGSASYRNLPGMLERLERG 118

Query: 147 KRVVD--TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            + +    D    + FE   +     N+ RG   ++TI EGCDKFC +CVVPYTRG E S
Sbjct: 119 DQRITGLDDKKTTETFETPFVART--NQHRG---YITIIEGCDKFCAYCVVPYTRGNERS 173

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           RS + V++EAR++ D+G  EI LLGQNVN++R     G K +F++LL+++  I G+ R+R
Sbjct: 174 RSAASVMEEARRMADSGYTEIQLLGQNVNSYRDPS--GAK-SFAELLHAVGTIPGIRRVR 230

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +TTSHPRD +  +++       L  ++HLPVQSGS RIL +M R +T   Y + I  +++
Sbjct: 231 FTTSHPRDFTRDIVEVIDATPTLCDHVHLPVQSGSTRILAAMAREYTREWYLERIAWMKA 290

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
            + DI+++SD IVGFPGETD+D   T  L+D +GY   F+FKYSPR  TP  +M + + +
Sbjct: 291 AKRDISMTSDIIVGFPGETDEDLEDTATLLDAVGYDAIFAFKYSPRPNTPSVSMADSLSD 350

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
            VKA RL  L  + RE Q       +GQ++EV++E H +++ ++VGR+   +++   +  
Sbjct: 351 EVKAARLQILLDRQREIQRINYQRHIGQVVEVMVEGHNRQRNQVVGRTSQNKTLNFTTAQ 410

Query: 445 ---HNIGDIIKVRITDVKISTLYGE 466
                +G    VRIT    ++L GE
Sbjct: 411 PIMPALGSYQMVRITQAFPNSLLGE 435


>gi|222529490|ref|YP_002573372.1| (dimethylallyl)adenosine tRNA methylthiotransferase
           [Caldicellulosiruptor bescii DSM 6725]
 gi|222456337|gb|ACM60599.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Caldicellulosiruptor
           bescii DSM 6725]
          Length = 471

 Score =  330 bits (846), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 174/447 (38%), Positives = 277/447 (61%), Gaps = 14/447 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +++ + +YGCQMNV+DS ++  M  + GY    ++ +ADLI+ NTC +RE A  +VY  +
Sbjct: 36  KKYHIVTYGCQMNVHDSEKLAGMLNAMGYIETENIQEADLIIFNTCSVREHAESRVYGNI 95

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAE--GEEILRRSPIVNVVVGPQTYYRLPELLER 142
           G ++ LK  +     DL+V V GC+ Q     +++ +  P ++++ G ++ ++ P+LL  
Sbjct: 96  GPLKRLKEKK----PDLIVGVCGCMPQQVEVAQKLAKLFPFLDIIFGTKSLHKFPQLLYT 151

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           A   K+ V      ED      +V+G    R++GV+AF+ I  GC+ FC++C+VPY RG 
Sbjct: 152 AITEKKTVIEVSEDED-----VVVEGIPTARRQGVSAFVNIIYGCNNFCSYCIVPYVRGR 206

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR   +++ E  +L  NG+ E+TLLGQNVN++ GK L G   TF  LL  ++EIKG+ 
Sbjct: 207 ERSRRPEEIIYEIEQLAQNGIKEVTLLGQNVNSY-GKDL-GNSITFPKLLEKVNEIKGIE 264

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+ TSHP+D+SD LI A  DL+ +  ++HLPVQSGS RILK+MNR +T  +Y +++++
Sbjct: 265 RIRFVTSHPKDLSDELIVAMRDLEKVCEHIHLPVQSGSTRILKAMNRHYTKEDYLRLVEK 324

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +++  PDIAI++D IVGFPGETD+DF  T+D+  K+ +  A++F YS R GTP   M  Q
Sbjct: 325 LKTNIPDIAITTDIIVGFPGETDEDFEDTLDVCRKVEFDSAYTFIYSKRRGTPAEKMPNQ 384

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           V +++K +R   L K + E  +  N   +G+  E+LI+ H K    L GR+   + V + 
Sbjct: 385 VPDDIKYQRFQRLVKLVEEIALKKNRQMLGKTYEILIDSHSKRNNLLAGRTRTNKVVNVK 444

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                +   + V+I +     LYGE++
Sbjct: 445 CSEEFMFKFVNVKIFEAAEHWLYGEVI 471


>gi|312127450|ref|YP_003992324.1| tRNA-i(6)a37 thiotransferase enzyme miab [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311777469|gb|ADQ06955.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 471

 Score =  330 bits (846), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 177/447 (39%), Positives = 279/447 (62%), Gaps = 14/447 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +++ + +YGCQMNV+DS ++  M  + GY    ++ +ADLI+ NTC +RE A  +VY  +
Sbjct: 36  KKYHIVTYGCQMNVHDSEKLAGMLNAMGYIETENIQEADLIIFNTCSVREHAESRVYGNI 95

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAE--GEEILRRSPIVNVVVGPQTYYRLPELLER 142
           G ++ LK+ +     DL++ V GC+ Q     +++ +  P ++++ G ++ ++ P+LL  
Sbjct: 96  GPLKRLKDKK----PDLIIGVCGCMPQQVEVAQKLAKLFPFLDIIFGTKSLHKFPQLLYT 151

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           A   K+ V      ED      +V+G    RK+GV+AF+ I  GC+ FC++C+VPY RG 
Sbjct: 152 AIMEKKTVIDVSEDED-----VVVEGIPTARKQGVSAFVNIIYGCNNFCSYCIVPYVRGR 206

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR   ++V E  +L  NGV E+TLLGQNVN++ GK L G+  TF  LL  ++EIKG+ 
Sbjct: 207 ERSRRPEEIVYEIEQLAQNGVKEVTLLGQNVNSY-GKDL-GDGITFPKLLEKVNEIKGIE 264

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+ TSHP+D+SD LI A  DL+ +  ++HLPVQSGS RILK+MNR +T  +Y ++I++
Sbjct: 265 RIRFVTSHPKDLSDELIVAMRDLEKVCEHIHLPVQSGSTRILKAMNRHYTKEDYLRLIEK 324

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +++  PDIAI++D IVGFPGETD+DF  T+D+  K+ +  A++F YS R GTP   M  Q
Sbjct: 325 LKTNIPDIAITTDIIVGFPGETDEDFEDTLDVCRKVEFDSAYTFIYSKRRGTPAEKMPNQ 384

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           V +++K +R   L K + +  +  N   +G+  EVLI+   K    LVGR+   + V + 
Sbjct: 385 VPDDIKRQRFQRLVKLVEDIALKKNRQMLGKTYEVLIDGQSKRNNLLVGRTRTNKVVNVK 444

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                +   + V+I +     LYGE++
Sbjct: 445 CPEEYMFKFVNVKILEAAEHWLYGEVI 471


>gi|225174619|ref|ZP_03728617.1| RNA modification enzyme, MiaB family [Dethiobacter alkaliphilus AHT
           1]
 gi|225169746|gb|EEG78542.1| RNA modification enzyme, MiaB family [Dethiobacter alkaliphilus AHT
           1]
          Length = 457

 Score =  329 bits (844), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 177/438 (40%), Positives = 266/438 (60%), Gaps = 15/438 (3%)

Query: 32  YGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLK 91
           +GCQMN  D+  +       GYE V+ ++ ADL+++NTC +R+KA EKV+  +GR+  LK
Sbjct: 14  FGCQMNERDAETLRGFLDEIGYEEVDEVEGADLVIMNTCAVRQKAEEKVFGRIGRLGVLK 73

Query: 92  NSRIKEGGDLLVVVAGCVAQAE--GEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR- 148
               KE  ++++ V GC+ Q E   ++I +  P V+++ G       PELL+RA   K  
Sbjct: 74  ----KENPEMMIAVCGCMVQQEDVAKKIKKSYPFVDLIFGTHNIAAFPELLQRAAESKET 129

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           V+D      D  E L +      RK GV A++ I  GC+ FC++C+VPY RG E SR   
Sbjct: 130 VLDLWDEAGDVVEGLPVT-----RKDGVKAWVNITYGCNNFCSYCIVPYVRGRERSRKPE 184

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
           ++++E + L   G  E+TLLGQNVN++ GK L+ E+  F+DLL  +     + R+R+ TS
Sbjct: 185 EIINEIKALAKQGFKEVTLLGQNVNSY-GKDLE-EEMDFADLLVRVDRETDINRIRFMTS 242

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
           HPRD ++ L K  G+ D +  ++HLP+Q+GS+RILK MNR +T   Y  ++D +R   PD
Sbjct: 243 HPRDFTEKLAKVMGECDSVCEHVHLPIQAGSNRILKLMNRGYTKEHYLDLVDILRKYAPD 302

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
            A+S+D IVGFPGET++DF  T+D+VD++GY  AF+F YSPR GTP ++M  QV   VK 
Sbjct: 303 CALSTDIIVGFPGETEEDFLDTLDVVDRVGYDMAFTFLYSPRSGTPAADMPHQVANEVKK 362

Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVLNSKNHNI 447
           ER   L +   +  +  N   VG+ +EVL+E   K + G + GR+   ++V    +N N 
Sbjct: 363 ERFQRLLEVQNKHSLRHNQEAVGKTVEVLVEGPSKTDPGVMTGRTRSSKTVNFTGENVNA 422

Query: 448 GDIIKVRITDVKISTLYG 465
           GD++ V IT  +  +L G
Sbjct: 423 GDLVMVEITQARTWSLLG 440


>gi|312793678|ref|YP_004026601.1| tRNA-i(6)a37 thiotransferase enzyme miab [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312180818|gb|ADQ40988.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 471

 Score =  329 bits (844), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 174/447 (38%), Positives = 279/447 (62%), Gaps = 14/447 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +++ + +YGCQMNV+DS ++  M  + GY    ++ +ADLI+ NTC +RE A  +VY  +
Sbjct: 36  KKYHIVTYGCQMNVHDSEKLAGMLNAMGYIETENIQEADLIIFNTCSVREHAESRVYGNI 95

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAE--GEEILRRSPIVNVVVGPQTYYRLPELLER 142
           G ++ LK+ +     DL++ V GC+ Q     +++ +  P ++++ G ++ ++ P+LL  
Sbjct: 96  GPLKRLKDKK----PDLIIGVCGCMPQQVEVAQKLAKLFPFLDIIFGTKSLHKFPQLLYT 151

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           A   K+ V      ED      +V+G    R++GV+AF+ I  GC+ FC++C+VPY RG 
Sbjct: 152 AITEKKTVIDVSEDED-----VVVEGIPTARRQGVSAFVNIIYGCNNFCSYCIVPYVRGR 206

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR   +++ E  +L  NGV E+TLLGQNVN++ GK L G   TF  LL  ++EI+G+ 
Sbjct: 207 ERSRRPEEIIYEIEQLAQNGVKEVTLLGQNVNSY-GKDL-GNGITFPKLLEKVNEIEGIE 264

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+ TSHP+D+SD LI A  DL+ +  ++HLPVQSGS RILK+MNR +T  +Y +++++
Sbjct: 265 RIRFVTSHPKDLSDELIVAMRDLEKVCEHIHLPVQSGSTRILKAMNRHYTKEDYLRLVEK 324

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +++  PDIAI++D IVGFPGETD+DF  T+D+  K+ +  A++F YS R GTP   M  Q
Sbjct: 325 LKTNIPDIAITTDIIVGFPGETDEDFEDTLDVCRKVEFDSAYTFIYSKRRGTPAEKMPNQ 384

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           V +++K +R   L K + E  +  N   +G+  E+LI+ H K    LVGR+   + V + 
Sbjct: 385 VPDDIKHQRFQRLVKLVEEIALKKNRQMLGKTYEILIDGHSKRNNLLVGRTRTNKVVNVK 444

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                +   + V+I +     LYGE++
Sbjct: 445 CPEEYMFKFVNVKILEAAEHWLYGEVI 471


>gi|153004383|ref|YP_001378708.1| (dimethylallyl)adenosine tRNA methylthiotransferase
           [Anaeromyxobacter sp. Fw109-5]
 gi|229890439|sp|A7HAH8|MIAB_ANADF RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|152027956|gb|ABS25724.1| RNA modification enzyme, MiaB family [Anaeromyxobacter sp. Fw109-5]
          Length = 460

 Score =  329 bits (843), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 182/451 (40%), Positives = 269/451 (59%), Gaps = 26/451 (5%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ +V ++GCQMN  DS RM ++     + R  + DDADLI+LNTC +REKA +K+ S L
Sbjct: 23  RKVYVHTFGCQMNASDSDRMIELLGRHAFARAETPDDADLILLNTCAVREKAEQKLLSAL 82

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR R +K  R       L+ V+GCVAQ E + +L R P V+ V GP    +LPE++ RA 
Sbjct: 83  GRYREVKARR-----GALIAVSGCVAQQEKDRLLARVPYVDFVFGPDNIGKLPEMVARAE 137

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
             +R  +T + ++ +       D    R R  TAF+T  +GCD  C FC+VP+TRG E+S
Sbjct: 138 -RERFAETGW-MDSQDYVFPQADPEAARGR-PTAFVTAMKGCDNVCAFCIVPHTRGREVS 194

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R+  ++V E   L + GV E+TL+GQNVN++ G       CTF++LL  ++ + G+ R+R
Sbjct: 195 RAFPEIVAECASLAEVGVREVTLIGQNVNSYAGG------CTFAELLRRVAAVPGIARIR 248

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +TTSHP D+SD L+    D   +MP+ HLPVQSGSD +L  M R +T  EY    DR+R+
Sbjct: 249 FTTSHPHDLSDALVAVFRDEPKVMPHFHLPVQSGSDAVLARMRRDYTVAEYLDRFDRLRA 308

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP--------RLGTPGS 376
            RP IAI++DFIVGFPGE + DF  ++ L+++  + Q+FSF +SP        RLGT  +
Sbjct: 309 ARPGIAITTDFIVGFPGEGEADFEGSLALLERARFEQSFSFLFSPRPKTVANLRLGT--A 366

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQ 436
              +++   V  ERL  LQ   R    +   A +G+++EVL+E    E G+ +GR+P  +
Sbjct: 367 PEWQEIPRAVAVERLERLQAAQRRIAAAALAAELGKVVEVLVEGASDEPGERLGRTPENR 426

Query: 437 SVVL--NSKNHNIGDIIKVRITDVKISTLYG 465
            V L  +      G +++ RIT    S+L G
Sbjct: 427 VVHLAADEAGAPTGALVRARITRAGGSSLSG 457


>gi|220932005|ref|YP_002508913.1| RNA modification enzyme, MiaB family [Halothermothrix orenii H 168]
 gi|219993315|gb|ACL69918.1| RNA modification enzyme, MiaB family [Halothermothrix orenii H 168]
          Length = 450

 Score =  329 bits (843), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 175/447 (39%), Positives = 275/447 (61%), Gaps = 13/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +++F+ +YGCQMNV+DS ++  M    GY+  N++++AD+I++NTC +RE A  +V+  +
Sbjct: 4   RKYFILTYGCQMNVHDSEKLAGMLEEMGYKSTNNLEEADIIMVNTCAVRENAELRVFGRV 63

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAE--GEEILRRSPIVNVVVGPQTYYRLPELLER 142
           G  + LK    ++  DL++ V GC+ Q +    ++  + P V+++ G    + +PEL++R
Sbjct: 64  GDFKRLK----EKNPDLIIGVGGCMMQIDENARKLYEKYPHVDLIFGTHNIHHIPELIKR 119

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            +  +  +   ++ E+      I D  Y R+    A+++I +GC+ FCT+C+VPY RG E
Sbjct: 120 IKEERGRIIEVWNQEEGL----IPDIPYKREDDFKAWISIIQGCNNFCTYCIVPYVRGRE 175

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR  + ++ EARKL   GV EITLLGQNVN++ GK L  E   F+DLL  L+ ++G+ R
Sbjct: 176 RSRPAADIISEARKLASEGVKEITLLGQNVNSY-GKDLK-EDIDFADLLKRLNRVEGIKR 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +RY TSHPRD SD +IK   + D +  + HLPVQSGS RILK MNR +T  EY  +I +I
Sbjct: 234 IRYMTSHPRDFSDKMIKIIKECDKVCEHFHLPVQSGSTRILKKMNRGYTQAEYLNLIKKI 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           +S  PD +I++D IVGFPGET++DF+ T+ ++ ++ +  A++FKYSPR GTP +   +QV
Sbjct: 294 KSQIPDYSITTDIIVGFPGETEEDFQETLKVIREVRFDMAYTFKYSPRKGTPAARHKDQV 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
            E +K +RL  L +      +  N    G+ +EVLIE   +              +V+  
Sbjct: 354 SEKIKQDRLTRLIEVQNSISLENNRKLKGKTVEVLIEGESRNNPDTFEGRTRTNKLVIVP 413

Query: 443 KNHNI-GDIIKVRITDVKISTLYGELV 468
           +N N+ G I  V+I  V   TLYGE++
Sbjct: 414 RNENLKGQIANVKINRVGSWTLYGEVI 440


>gi|225865753|ref|YP_002751131.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus 03BB102]
 gi|225786232|gb|ACO26449.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus 03BB102]
          Length = 509

 Score =  329 bits (843), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 183/448 (40%), Positives = 273/448 (60%), Gaps = 15/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++F++++YGCQMN +D+  M  +F + GYE   S +DAD+++LNTC IRE A  KV+  L
Sbjct: 66  RKFYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGEL 125

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G +++LK    +   DLL+ V GC++Q E    +I++++  V++V G    +RLP +L+ 
Sbjct: 126 GHLKSLK----RRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKD 181

Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           A F K  V   +S E D  E L  V     R+  + A++ I  GCDKFCT+C+VPYTRG 
Sbjct: 182 AMFSKETVVEVWSKEGDVIENLPKV-----RRGDIKAWVNIMYGCDKFCTYCIVPYTRGK 236

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR    ++ E R L+ NG  EITLLGQNVNA+ GK  +  +    DL+  L ++  + 
Sbjct: 237 ERSRRPEDIIQEIRHLVANGYKEITLLGQNVNAY-GKDFEDIEYGLGDLMDELRKVD-IA 294

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHPRD  D LI+  G    L+ ++HLPVQSGS  +LK M R+++   Y +++ +
Sbjct: 295 RIRFTTSHPRDFDDHLIEVLGKGGNLVEHIHLPVQSGSTEMLKIMARKYSREHYLELVRK 354

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I+   P+  +++D IVGFP ETD+ F  TM L  ++G+  AF+F YSPR GTP + M + 
Sbjct: 355 IKEAIPNAVLTTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDN 414

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440
           V   VK ERL  L   + +  +  ND   GQI+EVL++   K   + L G +   + V  
Sbjct: 415 VPMEVKKERLQRLNALVNKLAIEKNDRYKGQIVEVLVDGESKNNPEVLAGYTRTNKLVNF 474

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
            +    IG ++KV++TD K  +L GELV
Sbjct: 475 VAPKSLIGQLVKVKVTDAKTWSLNGELV 502


>gi|150390308|ref|YP_001320357.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Alkaliphilus
           metalliredigens QYMF]
 gi|229890435|sp|A6TR80|MIAB_ALKMQ RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|149950170|gb|ABR48698.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Alkaliphilus
           metalliredigens QYMF]
          Length = 476

 Score =  328 bits (841), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 177/449 (39%), Positives = 283/449 (63%), Gaps = 17/449 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++    +YGCQMN +DS ++  +  + GY   N  ++A+LI+ NTC +RE A  KVY  +
Sbjct: 39  KKHLTVTYGCQMNEHDSEKLAGILQNIGYIETNDKNEANLIIYNTCCVRENAELKVYGNI 98

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G ++NLK    KE  DL + V GC+ Q     +EI  +   V++V G    ++ PELL  
Sbjct: 99  GSLKNLK----KEKHDLTIAVCGCMMQQPHVVKEIKSKYRHVDLVFGTHNLHKFPELLST 154

Query: 143 ARFGKRVVDTDYSVEDKFERLS-IVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           +      +++D  + D +++   IV+G    RK G+ AF+ I  GC+ FCT+C+VP+TRG
Sbjct: 155 S------MESDNMIIDVWDKEGDIVEGLPVTRKYGLKAFINIMFGCNNFCTYCIVPHTRG 208

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E SR + +++DE  +L  NG  EITLLGQNVN++ GK L+ E+  F +LL  L++I+G+
Sbjct: 209 RERSREVQEIIDEVEELAKNGTKEITLLGQNVNSY-GKTLE-EETDFGNLLKVLNKIEGI 266

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+ TSHP+D+SD LI A      +  +LHLP Q+GS+ ILK+MNR++T   Y ++++
Sbjct: 267 ERIRFMTSHPKDLSDSLISAMTVCTKVCAHLHLPFQAGSNDILKAMNRKYTKEAYLELVE 326

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++RS  P++A+++D IVGFPGET+DDF+ T+++V+K  +  A+++ YS R  TP + M  
Sbjct: 327 KVRSKVPNVALTTDIIVGFPGETEDDFKETLNVVEKARFNSAYTYLYSLRQETPAAKMEN 386

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVV 439
            V ++VK ER   L + +       N A + +++EVL+E   K +  KL+GR+P  + V 
Sbjct: 387 HVPDDVKHERFNRLIEAVNRISGEINKAYLNKVVEVLVEGTSKTDDAKLMGRTPQSKLVN 446

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                 +IG I++V+IT+ K  +L GEL+
Sbjct: 447 FAGNKEDIGQIVRVKITEPKTFSLNGELL 475


>gi|78223499|ref|YP_385246.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Geobacter
           metallireducens GS-15]
 gi|123756395|sp|Q39TA3|MIAB_GEOMG RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|78194754|gb|ABB32521.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Geobacter metallireducens
           GS-15]
          Length = 441

 Score =  328 bits (841), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 182/447 (40%), Positives = 264/447 (59%), Gaps = 18/447 (4%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
            +++++GCQMNV DS ++  +   +GY +     +ADLI++NTC +R KA  KVYS+LGR
Sbjct: 7   LYIETFGCQMNVSDSEKVASLLRGEGYSQTPDSSEADLIIVNTCSVRAKAEHKVYSYLGR 66

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
            R LK  R      LL+ V GCVAQ EGE +L+R P +++V G    + LPE++  A  G
Sbjct: 67  FRKLKRDR-----RLLLGVGGCVAQQEGERLLKRVPWLDLVFGTHNLHLLPEMVRAAEQG 121

Query: 147 KRVVDTDYSVEDKFERLSIV----DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           +R    D+   D   RL +     +GG     GVT F+T+ +GCD FC++C+VPY RG E
Sbjct: 122 ERRAAVDFI--DNEARLDLFPQADEGG-----GVTRFVTVMQGCDNFCSYCIVPYVRGRE 174

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           ISR   +++ E R  +  GV E+TLLGQNVN++ G    GE  +F+ LL  +S I GL R
Sbjct: 175 ISRRSVEIIGEIRSAVAGGVREVTLLGQNVNSY-GLKTPGE-LSFAGLLREISAIDGLER 232

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP+D+S  LI    +L  L  ++HLP Q+GSD IL  MNR +T  EY + +  +
Sbjct: 233 IRFTTSHPKDISPELIACFAELPKLCGHIHLPAQAGSDSILARMNRGYTRQEYLEKVAAL 292

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+ RP+I I+ D IVGFPGET+ DF  T+ L++++ Y   FSF YSPR  T  +++ +++
Sbjct: 293 RAARPEILITGDIIVGFPGETEADFLQTLSLMEEVRYTDIFSFAYSPRPETAAASLGDRI 352

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
                 ERL  +Q   R+  +  +   VG    VL+E   K   +L GR+     V    
Sbjct: 353 MRKETTERLERVQGLQRDMTIERHAGFVGTCQAVLVEGMSKRGDQLYGRTDGNLIVNFAG 412

Query: 443 KNHNIGDIIKVRITDVKISTLYGELVV 469
                G ++ VRIT    ++L GEL V
Sbjct: 413 NPSLAGSLVDVRITRGYPNSLLGELAV 439


>gi|255657963|ref|ZP_05403372.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Mitsuokella multacida DSM
           20544]
 gi|260850164|gb|EEX70171.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Mitsuokella multacida DSM
           20544]
          Length = 444

 Score =  328 bits (841), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 176/440 (40%), Positives = 270/440 (61%), Gaps = 16/440 (3%)

Query: 32  YGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLK 91
           YGCQMN  D+ RM     + GYER  SM++ADLI++NTC +RE A ++VY  +G I+ LK
Sbjct: 17  YGCQMNQSDAERMMGQLRTIGYERTESMEEADLILINTCCVRETAEDRVYGKIGEIKRLK 76

Query: 92  NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE--RARFGKRV 149
               +E  +L+  + GC+AQ EG+ +++R+P ++ V+G    + L  +++  +A  G  V
Sbjct: 77  ----RENPELIFGITGCMAQKEGDALIKRAPHIDFVLGTNKVHELTHVVQEIQAEHG-HV 131

Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209
           VD      +  + + +   G      ++A++ I  GC+ FCT+C+VPY RG E SR    
Sbjct: 132 VDVQLGETELPDDVPVARAG-----SLSAWVPIMYGCNNFCTYCIVPYVRGRERSRLPED 186

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSH 269
           +V E  + + NG  E+TLLGQNVN++   G D +   F+DLL  + ++ G+ R+R+ TSH
Sbjct: 187 IVHEVEEAVKNGYEEVTLLGQNVNSY---GKDHKLADFADLLKMVDKVPGIRRVRFMTSH 243

Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329
           P+D+SD +I A  D + L  ++HLPVQ GS+RILK+MNR +T   YR ++ RIR+  PD+
Sbjct: 244 PKDLSDKVIAAIRDGEHLCEHIHLPVQYGSNRILKAMNRVYTVESYRDLVRRIRAAIPDV 303

Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAE 389
           ++++D IVGFPGETD+DF+  +D + +I Y  A++F YS R GTP + M  QVDE+VK E
Sbjct: 304 SLTTDLIVGFPGETDEDFQQMLDFLREIRYDSAYTFIYSKRSGTPAATMENQVDESVKKE 363

Query: 390 RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVLNSKNHNIG 448
           RL  L     E  ++ N+  +G+ +E+++E   K E    +GR+   + V+        G
Sbjct: 364 RLNALMAVQNEISLAINEKLLGKTLEIMVEGPSKNEPSVWMGRTRTNKIVLFAHAGEKPG 423

Query: 449 DIIKVRITDVKISTLYGELV 468
           D I VRIT  +   L GE V
Sbjct: 424 DFIDVRITHPQTWVLKGERV 443


>gi|304316819|ref|YP_003851964.1| RNA modification enzyme, MiaB family [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778321|gb|ADL68880.1| RNA modification enzyme, MiaB family [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 471

 Score =  328 bits (841), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 183/463 (39%), Positives = 286/463 (61%), Gaps = 22/463 (4%)

Query: 16  QIVDQCIVPQR-----FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC 70
           +I++Q  V  R     F +++YGCQMNV+DS ++  M    GY   ++++DAD+I+ NTC
Sbjct: 19  EIINQMAVLNRDRYPKFHIETYGCQMNVHDSEKLAGMLTEMGYTHTDNLEDADVILFNTC 78

Query: 71  HIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVV 128
            +RE A  +++  + +++ LK  +     ++++ + GC+ Q +   E I    P +++V 
Sbjct: 79  CVREHAEIRIFGRVSQLKELKQRK----PNIILGICGCMMQEKEVVEAIKNDYPYIDIVF 134

Query: 129 GPQTYYRLPELLERARFGKRVVDTDYSVEDKFE-RLSIV-DGGYNRKRGVTAFLTIQEGC 186
           G    ++ PELL+ +      +++D ++ D ++   SIV D    R  G+ A++ I  GC
Sbjct: 135 GTHNLFKFPELLQES------LNSDTTIIDIWDDNKSIVEDIPIRRAEGLKAWVNIIYGC 188

Query: 187 DKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT 246
           + FCT+C+VPY RG E SR    +++E + L + G  EITLLGQNVN++ G  L   K  
Sbjct: 189 NNFCTYCIVPYVRGREKSREPHDILNEIKSLANEGFKEITLLGQNVNSY-GNDLPI-KID 246

Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306
           F+DLLY +++I G+ R+R+ TSHP+D+SD LI A  DLD L  +LHLPVQSGS++IL+ M
Sbjct: 247 FADLLYMINDIDGIERIRFMTSHPKDISDKLIFAMRDLDKLCEHLHLPVQSGSNKILERM 306

Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
           NR+++   Y +II+++R   P IAI++D IVGFPGETD DF+ T+DLV ++ Y  A++F 
Sbjct: 307 NRKYSRERYLEIINKLRDNIPGIAITTDIIVGFPGETDKDFQDTLDLVKEVRYDSAYTFI 366

Query: 367 YSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EK 425
           YS R GTP   M  QVDE++K +RL  L        +  N+   G+++EVL+E   K + 
Sbjct: 367 YSKRKGTPAEKMSNQVDEDIKHKRLEELINLQNIISIEKNNEMKGKVVEVLVEGTSKRDS 426

Query: 426 GKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            KL GR+   + V   +K   IG  + V+I D K  T+ GEL+
Sbjct: 427 EKLTGRTRTNKIVHFKAKPELIGKFVNVKIIDTKAWTMQGELI 469


>gi|229162708|ref|ZP_04290665.1| hypothetical protein bcere0009_34780 [Bacillus cereus R309803]
 gi|228620590|gb|EEK77459.1| hypothetical protein bcere0009_34780 [Bacillus cereus R309803]
          Length = 509

 Score =  328 bits (840), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 183/448 (40%), Positives = 272/448 (60%), Gaps = 15/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++F++++YGCQMN +D+  M  +F + GYE   S +DAD+++LNTC IRE A  KV+  L
Sbjct: 66  RKFYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGEL 125

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G +++LK    +   DLL+ V GC++Q E    +I++++  V++V G    +RLP +L+ 
Sbjct: 126 GHLKSLK----RRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKD 181

Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           A F K  V   +S E D  E L  V     R+  + A++ I  GCDKFCT+C+VPYTRG 
Sbjct: 182 AMFSKETVVEVWSKEGDVIENLPKV-----RRGDIKAWVNIMYGCDKFCTYCIVPYTRGK 236

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR    ++ E R L  NG  EITLLGQNVNA+ GK  +  +    DL+  L ++  + 
Sbjct: 237 ERSRRPEDIIQEIRHLAANGYKEITLLGQNVNAY-GKDFEDFEYGLGDLMDELRKVD-IA 294

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHPRD  D LI+  G    L+ ++HLPVQSGS  +LK M R+++   Y +++ +
Sbjct: 295 RIRFTTSHPRDFDDHLIEVLGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRK 354

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I+   P+  +++D IVGFP ETD+ F  TM L  ++G+  AF+F YSPR GTP + M + 
Sbjct: 355 IKEAIPNAVLTTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDN 414

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440
           V   VK ERL  L   + +  +  ND   GQI+EVL++   K   + L G +   + V  
Sbjct: 415 VPMEVKKERLQRLNTLVNKLAIEKNDRYKGQIVEVLVDGESKNNAEVLAGYTRTNKLVNF 474

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
            +    IG ++KV++TD K  +L GELV
Sbjct: 475 VAPKSLIGQLVKVKVTDAKTWSLNGELV 502


>gi|30263778|ref|NP_846155.1| hypothetical protein BA_3908 [Bacillus anthracis str. Ames]
 gi|47529199|ref|YP_020548.1| hypothetical protein GBAA_3908 [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49186622|ref|YP_029874.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
           anthracis str. Sterne]
 gi|165872391|ref|ZP_02217026.1| conserved hypothetical protein [Bacillus anthracis str. A0488]
 gi|167635860|ref|ZP_02394169.1| conserved hypothetical protein [Bacillus anthracis str. A0442]
 gi|167639855|ref|ZP_02398124.1| conserved hypothetical protein [Bacillus anthracis str. A0193]
 gi|170687836|ref|ZP_02879050.1| conserved hypothetical protein [Bacillus anthracis str. A0465]
 gi|170706889|ref|ZP_02897347.1| conserved hypothetical protein [Bacillus anthracis str. A0389]
 gi|177652051|ref|ZP_02934597.1| conserved hypothetical protein [Bacillus anthracis str. A0174]
 gi|190568422|ref|ZP_03021329.1| conserved hypothetical protein [Bacillus anthracis Tsiankovskii-I]
 gi|227813320|ref|YP_002813329.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus anthracis str.
           CDC 684]
 gi|229602893|ref|YP_002868014.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus anthracis str.
           A0248]
 gi|254683519|ref|ZP_05147379.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus anthracis str.
           CNEVA-9066]
 gi|254722040|ref|ZP_05183829.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus anthracis str.
           A1055]
 gi|254735812|ref|ZP_05193518.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus anthracis str.
           Western North America USA6153]
 gi|254739662|ref|ZP_05197356.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus anthracis str.
           Kruger B]
 gi|254751058|ref|ZP_05203097.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus anthracis str.
           Vollum]
 gi|254759376|ref|ZP_05211401.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus anthracis str.
           Australia 94]
 gi|81583703|sp|Q81WR0|MIAB_BACAN RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|30258422|gb|AAP27641.1| conserved hypothetical protein [Bacillus anthracis str. Ames]
 gi|47504347|gb|AAT33023.1| conserved hypothetical protein [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49180549|gb|AAT55925.1| conserved hypothetical protein [Bacillus anthracis str. Sterne]
 gi|164711829|gb|EDR17371.1| conserved hypothetical protein [Bacillus anthracis str. A0488]
 gi|167512256|gb|EDR87633.1| conserved hypothetical protein [Bacillus anthracis str. A0193]
 gi|167528817|gb|EDR91575.1| conserved hypothetical protein [Bacillus anthracis str. A0442]
 gi|170128307|gb|EDS97176.1| conserved hypothetical protein [Bacillus anthracis str. A0389]
 gi|170668152|gb|EDT18901.1| conserved hypothetical protein [Bacillus anthracis str. A0465]
 gi|172082420|gb|EDT67485.1| conserved hypothetical protein [Bacillus anthracis str. A0174]
 gi|190560426|gb|EDV14404.1| conserved hypothetical protein [Bacillus anthracis Tsiankovskii-I]
 gi|227004716|gb|ACP14459.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus anthracis str.
           CDC 684]
 gi|229267301|gb|ACQ48938.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus anthracis str.
           A0248]
          Length = 509

 Score =  328 bits (840), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 182/448 (40%), Positives = 272/448 (60%), Gaps = 15/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++F++++YGCQMN +D+  M  +F + GYE   S +DAD+++LNTC IRE A  KV+  L
Sbjct: 66  RKFYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGEL 125

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G +++LK    +   DLL+ V GC++Q E    +I++++  V++V G    +RLP +L+ 
Sbjct: 126 GHLKSLK----RRNSDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKD 181

Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           A F K  V   +S E D  E L  V     R+  + A++ I  GCDKFCT+C+VPYTRG 
Sbjct: 182 AMFSKETVVEVWSKEGDVIENLPKV-----RRGDIKAWVNIMYGCDKFCTYCIVPYTRGK 236

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR    ++ E R L  NG  EITLLGQNVNA+ GK  +  +    DL+  L ++  + 
Sbjct: 237 ERSRRPEDIIQEIRHLAANGYKEITLLGQNVNAY-GKDFEDIEYGLGDLMDELRKVD-IA 294

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHPRD  D LI+  G    L+ ++HLPVQSGS  +LK M R+++   Y +++ +
Sbjct: 295 RIRFTTSHPRDFDDHLIEVLGKGGNLVEHIHLPVQSGSTEMLKIMARKYSREHYLELVRK 354

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I+   P+  +++D IVGFP ETD+ F  TM L  ++G+  AF+F YSPR GTP + M + 
Sbjct: 355 IKEAIPNAVLTTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDN 414

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440
           V   VK ERL  L   + +  +  ND   GQI+EVL++   K   + L G +   + V  
Sbjct: 415 VPMEVKKERLQRLNALVNKLAIEKNDRYKGQIVEVLVDGESKNNPEVLAGYTRTNKLVNF 474

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
            +    IG ++K+++TD K  +L GELV
Sbjct: 475 VAPKSLIGQLVKIKVTDAKTWSLNGELV 502


>gi|169830740|ref|YP_001716722.1| RNA modification protein [Candidatus Desulforudis audaxviator
           MP104C]
 gi|229890512|sp|B1I241|MIAB_DESAP RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|169637584|gb|ACA59090.1| RNA modification enzyme, MiaB family [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 443

 Score =  328 bits (840), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 181/452 (40%), Positives = 279/452 (61%), Gaps = 23/452 (5%)

Query: 25  QRFFVKS--YGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           +R FV +  +GCQMN +DS  M  +    GYE   S+ +ADL+++NTC +RE A  +V+ 
Sbjct: 4   ERKFVHTITFGCQMNEFDSELMTGLLEGMGYEPAKSLREADLVLINTCCVRESAENRVWG 63

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELL 140
            LG ++  K    ++  +L+V V+GC+ Q EG  EEI+RR P+V++V+G    + LP L+
Sbjct: 64  LLGSLKRYK----RDKPELIVAVSGCLPQQEGTAEEIIRRFPVVDLVLGTHNRHELPGLI 119

Query: 141 ERARFGKRVV----DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
           E  R G+R V      D +V +             RK G+ A++ +  GC+ FCT+CVVP
Sbjct: 120 EEVRAGRRPVLGVRQPDSAVPEGLP--------VRRKSGLRAWVPVIHGCNNFCTYCVVP 171

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256
           Y RG E SR    VVDE   L   G  E+TLLGQNVN++ G+ L GE   F+ LL  L  
Sbjct: 172 YVRGRECSRRPDAVVDEVCGLAAAGYREVTLLGQNVNSY-GRDL-GEGIDFAALLARLDG 229

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           ++GL R+R+TTSHPRD +D LI+       +  ++HLP Q+GS+R+L+ MNR +T  +Y 
Sbjct: 230 VEGLWRIRFTTSHPRDFTDRLIEVVARAAKVCEHIHLPAQAGSNRVLQRMNRGYTREDYL 289

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
            ++ RIR+  PD+++++D +VGFPGET++DF  T+DLV ++GY QAF+F Y+PR GTP +
Sbjct: 290 DLVARIRAAVPDVSLTTDLMVGFPGETEEDFADTLDLVRRVGYDQAFTFVYNPRRGTPAA 349

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GRSPWL 435
              +QV E+VK+ R+  L +  +E  ++ N A  G+++EVL+E     +  L+ GRS   
Sbjct: 350 GWPDQVPEDVKSRRIQELIQVQKEIGLARNRAEEGKVLEVLVEGPSATRPDLLSGRSRTN 409

Query: 436 QSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
           ++VV   +    G +++VR+    ++ L G +
Sbjct: 410 KTVVFPGEPGLAGQLVRVRVEVGHLTYLAGRV 441


>gi|312875820|ref|ZP_07735810.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311797301|gb|EFR13640.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Caldicellulosiruptor
           lactoaceticus 6A]
          Length = 471

 Score =  328 bits (840), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 174/447 (38%), Positives = 278/447 (62%), Gaps = 14/447 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +++ + +YGCQMNV+DS ++  M  + GY    ++ +ADLI+ NTC +RE A  +VY  +
Sbjct: 36  KKYHIVTYGCQMNVHDSEKLAGMLNAMGYIETENIQEADLIIFNTCSVREHAESRVYGNI 95

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAE--GEEILRRSPIVNVVVGPQTYYRLPELLER 142
           G ++ LK+ +     DL++ V GC+ Q     +++ +  P ++++ G ++ ++ P+LL  
Sbjct: 96  GPLKRLKDKK----PDLIIGVCGCMPQQVEVAQKLAKLFPFLDIIFGTKSLHKFPQLLYT 151

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           A   K+ V      ED      +V+G    R++GV+AF+ I  GC+ FC++C+VPY RG 
Sbjct: 152 AITEKKTVIDVSEDED-----VVVEGIPTARRQGVSAFVNIIYGCNNFCSYCIVPYVRGR 206

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR   +++ E  +L  NGV E+TLLGQNVN++ GK L G   TF  LL  ++EIKG+ 
Sbjct: 207 ERSRRPEEIIYEIEQLAQNGVKEVTLLGQNVNSY-GKDL-GNGITFPKLLEKVNEIKGIE 264

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+ TSHP+D+SD LI A  DL+ +  ++HLPVQSGS RILK+MNR +T  +Y +++++
Sbjct: 265 RIRFVTSHPKDLSDELIVAMRDLEKVCEHIHLPVQSGSTRILKAMNRHYTKEDYLRLVEK 324

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +++  PDIAI++D IVGFPGETD+DF  T+D+  K+ +  A++F YS R GTP   M  Q
Sbjct: 325 LKTNIPDIAITTDIIVGFPGETDEDFEDTLDVCRKVEFDSAYTFIYSKRRGTPAEKMPNQ 384

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           V +++K +R   L K + E  +  N   +G+  E+LI+   K    LVGR+   + V + 
Sbjct: 385 VPDDIKHQRFQQLVKLIEEIALKKNRQMLGKTYEILIDGRSKRNNLLVGRTRTNKVVNVK 444

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                +   + V+I +     LYGE++
Sbjct: 445 CPEEFMFKFVNVKILEAAEHWLYGEVI 471


>gi|312622276|ref|YP_004023889.1| tRNA-i(6)a37 thiotransferase enzyme miab [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312202743|gb|ADQ46070.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 471

 Score =  328 bits (840), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 173/447 (38%), Positives = 277/447 (61%), Gaps = 14/447 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +++ + +YGCQMNV+DS ++  +  + GY    ++ +ADLI+ NTC +RE A  +VY  +
Sbjct: 36  KKYHIVTYGCQMNVHDSEKLAGILNAMGYIETENIQEADLIIFNTCSVREHAESRVYGNI 95

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAE--GEEILRRSPIVNVVVGPQTYYRLPELLER 142
           G ++ LK  +     DL++ V GC+ Q     +++ +  P ++++ G ++ ++ P+LL  
Sbjct: 96  GPLKRLKEKK----PDLIIGVCGCMPQQVEVAQKLAKLFPFLDIIFGTKSLHKFPQLLYT 151

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           A   K+ V      ED      +V+G    R++GV+AF+ I  GC+ FC++C+VPY RG 
Sbjct: 152 AITEKKTVIDVSEDED-----VVVEGIPTARRQGVSAFVNIIYGCNNFCSYCIVPYVRGR 206

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR   +++ E  +L  NG+ E+TLLGQNVN++ GK L G   TF  LL  ++EIKG+ 
Sbjct: 207 ERSRQPEEIIYEIEQLAQNGIKEVTLLGQNVNSY-GKDL-GNNITFPKLLEKVNEIKGIE 264

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+ TSHP+D+SD LI A  DL+ +  ++HLPVQSGS RILK+MNR +T  +Y +++++
Sbjct: 265 RIRFVTSHPKDLSDELIVAMRDLEKVCEHIHLPVQSGSTRILKAMNRHYTKEDYLRLVEK 324

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +++  PDIAI++D IVGFPGETD+DF  T+D+  K+ +  A++F YS R GTP   M  Q
Sbjct: 325 LKTNIPDIAITTDIIVGFPGETDEDFEDTLDVCRKVEFDSAYTFIYSKRRGTPAEKMPNQ 384

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           V +N+K +R   L K + E  +  N   +G+  E+LI+   K    LVGR+   + V + 
Sbjct: 385 VPDNIKHQRFQRLVKLVEEIALKKNRQMLGRTYEILIDGRSKRNNLLVGRTRTNKVVNVK 444

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                +   + V+I +     LYGE++
Sbjct: 445 CSEEFMFKFVNVKILEAAEHWLYGEVI 471


>gi|295698304|ref|YP_003602959.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Candidatus Riesia
           pediculicola USDA]
 gi|291157316|gb|ADD79761.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Candidatus Riesia
           pediculicola USDA]
          Length = 445

 Score =  327 bits (839), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 175/450 (38%), Positives = 280/450 (62%), Gaps = 17/450 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQG-YERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ ++K++GC MN YDS ++ D+FF +  Y    +  +AD+I+LNTC +REKA EKV+  
Sbjct: 6   KKIYIKTWGCDMNKYDSSKIIDIFFKKKKYSLAKTDTEADIILLNTCSVREKAQEKVFHQ 65

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL--- 140
           LGR + LK ++I    +L++ V GCVA    + IL+R+P V+++ GP+T + LPE++   
Sbjct: 66  LGRWKKLKKNKI----ELILCVGGCVASQMNKSILKRAPYVDIIFGPKTIHLLPEMIRSF 121

Query: 141 ERARFGKRVVDTDYSV-EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           E++R  +++++ D +   +KF++          ++ +++ ++I EGC+K C+FC+VP+TR
Sbjct: 122 EKSR--RKIINIDSNFRNEKFQK-----NHETIRKDISSLISIIEGCNKKCSFCIVPFTR 174

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G E SR L++++ E + L+  G  EI LLGQNVNA+R    +G+   FS L+  +S I G
Sbjct: 175 GKEFSRPLNEILIEIKNLVSEGCREIHLLGQNVNAYRYVQKNGKIYDFSKLIQKISLING 234

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           + R++++T+HP   +  +I  +  +  L+ Y+H+PVQSGSD IL+ M R +T   Y++II
Sbjct: 235 VKRIKFSTNHPNHFTQDVIDLYSTISQLVDYVHIPVQSGSDEILRKMRRPYTIERYKKII 294

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            +IR VRPDI I SDFIVGFPGET +DF  T+ LV +I +  +FSF YS R GT  S + 
Sbjct: 295 KKIREVRPDILIGSDFIVGFPGETKEDFLKTIQLVKEIDFDVSFSFMYSSRPGTEASLLR 354

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKGKLVGRSPWLQSV 438
           +  + + K  RL  LQ  +  Q +  N   V Q  ++L+  K   +  KLVG S   + V
Sbjct: 355 DDTNGHEKRNRLYFLQNLIERQIIEHNKRMVNQTQKILVLSKDQNDPNKLVGFSNKNRKV 414

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           +       IG++I V+IT    + LYG  +
Sbjct: 415 IFYGSKEMIGNLIDVKITHFYKNKLYGRAI 444


>gi|229134580|ref|ZP_04263390.1| hypothetical protein bcere0014_34890 [Bacillus cereus BDRD-ST196]
 gi|229168512|ref|ZP_04296235.1| hypothetical protein bcere0007_34690 [Bacillus cereus AH621]
 gi|228614918|gb|EEK72020.1| hypothetical protein bcere0007_34690 [Bacillus cereus AH621]
 gi|228648841|gb|EEL04866.1| hypothetical protein bcere0014_34890 [Bacillus cereus BDRD-ST196]
          Length = 509

 Score =  327 bits (839), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 185/448 (41%), Positives = 272/448 (60%), Gaps = 15/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++F++++YGCQMN +D+  M  +F + GYE   S ++AD+I+LNTC IRE A  KV+  L
Sbjct: 66  RKFYIRTYGCQMNEHDTEVMAGIFTTLGYEPTFSTEEADVILLNTCAIRENAENKVFGEL 125

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G +++LK    +   DL++ V GC++Q E    +I++++  V++V G    +RLP +L+ 
Sbjct: 126 GHLKSLK----RRNPDLIIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKD 181

Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           A F K  V   +S E D  E L  V     R+  + A++ I  GCDKFCT+C+VPYTRG 
Sbjct: 182 AMFSKETVVEVWSKEGDVIENLPKV-----RRGDIKAWVNIMYGCDKFCTYCIVPYTRGK 236

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR    ++ E R L  NG  EITLLGQNVNA+ GK  +  +    DL+  L +I  + 
Sbjct: 237 ERSRRPEDIIKEIRHLAANGYREITLLGQNVNAY-GKDFEDIQYGLGDLMDELRKI-DIA 294

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHPRD  D LI   G    L+ ++HLPVQSGS  +LK M R+++   Y +++ +
Sbjct: 295 RIRFTTSHPRDFDDHLIDVLGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRK 354

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I+   P+  +++D IVGFP ETD+ F  TM L  ++G+  AF+F YSPR GTP + M + 
Sbjct: 355 IKETIPNAVLTTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMQDN 414

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440
           V   VK ERL  L   + E  V+ N   +GQI+EVL+E   K   + L G +   + V  
Sbjct: 415 VPMEVKKERLQRLNTLVNEYAVNKNKRYIGQIVEVLVEGESKNNPEVLAGYTRTNKLVNF 474

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
            +    IG ++KV+IT+ K  +L GELV
Sbjct: 475 VASKSLIGQLVKVKITEAKTWSLNGELV 502


>gi|196034172|ref|ZP_03101582.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus W]
 gi|196044479|ref|ZP_03111714.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus 03BB108]
 gi|218904900|ref|YP_002452734.1| hypothetical protein BCAH820_3784 [Bacillus cereus AH820]
 gi|228916410|ref|ZP_04079977.1| hypothetical protein bthur0012_36250 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228928822|ref|ZP_04091854.1| hypothetical protein bthur0010_35140 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228935069|ref|ZP_04097899.1| hypothetical protein bthur0009_35230 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228947493|ref|ZP_04109783.1| hypothetical protein bthur0007_36210 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|229123286|ref|ZP_04252490.1| hypothetical protein bcere0016_35750 [Bacillus cereus 95/8201]
 gi|229186011|ref|ZP_04313181.1| hypothetical protein bcere0004_35580 [Bacillus cereus BGSC 6E1]
 gi|301055262|ref|YP_003793473.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus anthracis CI]
 gi|229890419|sp|B7JJ50|MIAB_BACC0 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|229890697|sp|A0RHE4|MIAB_BACAH RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|195993246|gb|EDX57204.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus W]
 gi|196024514|gb|EDX63186.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus 03BB108]
 gi|218534759|gb|ACK87157.1| conserved hypothetical protein [Bacillus cereus AH820]
 gi|228597430|gb|EEK55080.1| hypothetical protein bcere0004_35580 [Bacillus cereus BGSC 6E1]
 gi|228660062|gb|EEL15698.1| hypothetical protein bcere0016_35750 [Bacillus cereus 95/8201]
 gi|228812013|gb|EEM58344.1| hypothetical protein bthur0007_36210 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228824639|gb|EEM70441.1| hypothetical protein bthur0009_35230 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228830629|gb|EEM76234.1| hypothetical protein bthur0010_35140 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228843213|gb|EEM88294.1| hypothetical protein bthur0012_36250 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|300377431|gb|ADK06335.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus biovar
           anthracis str. CI]
          Length = 509

 Score =  327 bits (839), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 183/448 (40%), Positives = 272/448 (60%), Gaps = 15/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++F++++YGCQMN +D+  M  +F + GYE   S +DAD+++LNTC IRE A  KV+  L
Sbjct: 66  RKFYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGEL 125

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G +++LK    +   DLL+ V GC++Q E    +I++++  V++V G    +RLP +L+ 
Sbjct: 126 GHLKSLK----RRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKD 181

Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           A F K  V   +S E D  E L  V     R+  + A++ I  GCDKFCT+C+VPYTRG 
Sbjct: 182 AMFSKETVVEVWSKEGDVIENLPKV-----RRGDIKAWVNIMYGCDKFCTYCIVPYTRGK 236

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR    ++ E R L  NG  EITLLGQNVNA+ GK  +  +    DL+  L ++  + 
Sbjct: 237 ERSRRPEDIIQEIRHLAANGYKEITLLGQNVNAY-GKDFEDIEYGLGDLMDELRKVD-IA 294

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHPRD  D LI+  G    L+ ++HLPVQSGS  +LK M R+++   Y +++ +
Sbjct: 295 RIRFTTSHPRDFDDHLIEVLGKGGNLVEHIHLPVQSGSTEMLKIMARKYSREHYLELVRK 354

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I+   P+  +++D IVGFP ETD+ F  TM L  ++G+  AF+F YSPR GTP + M + 
Sbjct: 355 IKEAIPNAVLTTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDN 414

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440
           V   VK ERL  L   + +  +  ND   GQI+EVL++   K   + L G +   + V  
Sbjct: 415 VPMEVKKERLQRLNALVNKLAIEKNDRYKGQIVEVLVDGESKNNPEVLAGYTRTNKLVNF 474

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
            +    IG ++KV++TD K  +L GELV
Sbjct: 475 VAPKSLIGQLVKVKVTDAKTWSLNGELV 502


>gi|163941460|ref|YP_001646344.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus
           weihenstephanensis KBAB4]
 gi|229890426|sp|A9VS16|MIAB_BACWK RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|163863657|gb|ABY44716.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus
           weihenstephanensis KBAB4]
          Length = 509

 Score =  327 bits (839), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 185/448 (41%), Positives = 272/448 (60%), Gaps = 15/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++F++++YGCQMN +D+  M  +F + GYE   S ++AD+I+LNTC IRE A  KV+  L
Sbjct: 66  RKFYIRTYGCQMNEHDTEVMAGIFTTLGYEPTFSTEEADVILLNTCAIRENAENKVFGEL 125

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G +++LK    +   DL++ V GC++Q E    +I++++  V++V G    +RLP +L+ 
Sbjct: 126 GHLKSLK----RRNPDLIIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKD 181

Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           A F K  V   +S E D  E L  V     R+  + A++ I  GCDKFCT+C+VPYTRG 
Sbjct: 182 AMFSKETVVEVWSKEGDVIENLPKV-----RRGDIKAWVNIMYGCDKFCTYCIVPYTRGK 236

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR    ++ E R L  NG  EITLLGQNVNA+ GK  +  +    DL+  L +I  + 
Sbjct: 237 ERSRRPEDIIKEIRHLAANGYKEITLLGQNVNAY-GKDFEDIQYGLGDLMDELRKID-IA 294

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHPRD  D LI   G    L+ ++HLPVQSGS  +LK M R+++   Y +++ +
Sbjct: 295 RIRFTTSHPRDFDDHLIDVLGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRK 354

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I+   P+  +++D IVGFP ETD+ F  TM L  ++G+  AF+F YSPR GTP + M + 
Sbjct: 355 IKETIPNAVLTTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMQDN 414

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440
           V   VK ERL  L   + E  V+ N   +GQI+EVL+E   K   + L G +   + V  
Sbjct: 415 VPMEVKKERLQRLNTLVNEYGVNKNKRYIGQIVEVLVEGESKNNPEVLAGYTRTNKLVNF 474

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
            +    IG ++KV+IT+ K  +L GELV
Sbjct: 475 VASKSLIGQLVKVKITEAKTWSLNGELV 502


>gi|77918818|ref|YP_356633.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Pelobacter
           carbinolicus DSM 2380]
 gi|123756643|sp|Q3A594|MIAB_PELCD RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|77544901|gb|ABA88463.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Pelobacter carbinolicus
           DSM 2380]
          Length = 438

 Score =  327 bits (838), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 174/447 (38%), Positives = 283/447 (63%), Gaps = 17/447 (3%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           F+++++GCQMNV DS ++  +  S GY  V+S + A+LI+LNTC IR +A  KVY  LGR
Sbjct: 4   FYLETFGCQMNVVDSEQIVGLVQSLGYSSVDSPEQANLIILNTCSIRARAERKVYGHLGR 63

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
            + LK  R     +L++ V GCVAQ EG+ +L + P +++V G    +RL +++  A   
Sbjct: 64  FKPLKQRR----PELIIAVCGCVAQQEGQRMLEKVPYLDIVCGTHNIHRLADMVRDAELH 119

Query: 147 K-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           + R V+ D+   DK  RL            V+ F+T+ +GCD FC++C+VP+ RG E+SR
Sbjct: 120 RARHVEVDFLEADKRRRLFPERAPSAE---VSRFVTVIQGCDNFCSYCIVPHVRGREVSR 176

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
             ++V++E R L++ G  EITL+GQNVN++  K  + ++ +F+ LL  ++E+ GL R+R+
Sbjct: 177 PSAEVLEEVRLLVEQGAREITLIGQNVNSYGCK--EDDEISFASLLRKVAEVDGLERIRF 234

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
            TSHP+D+SD LI    DLD L  ++HLPVQ+G D +LK+M R +T  +Y   I+R+R V
Sbjct: 235 MTSHPKDLSDELIDCFADLDKLCKHIHLPVQAGGDAVLKAMRRGYTRDQYLGRIERLRRV 294

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P+I ++SD IVGFPGET+ +F  TMDL+++  + + +SF +S R GT  +++ + + + 
Sbjct: 295 CPEIRMTSDVIVGFPGETESEFEQTMDLLERARFTEIYSFIFSARPGTSAADLPDDIPKE 354

Query: 386 VKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRSPWLQSVVLN 441
           VK +   R+L LQ+++  Q   ++   +GQ++ VL+E   ++  G+L GR+ W + V  +
Sbjct: 355 VKQQWFDRMLALQEEITRQ---YHQMDIGQVLPVLVEGSSRQGNGQLFGRTTWNRIVNFD 411

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                +G I+ VR+T    ++  GE V
Sbjct: 412 GNPDLVGRIVPVRLTVAYRNSHLGERV 438


>gi|118478993|ref|YP_896144.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
           thuringiensis str. Al Hakam]
 gi|118418218|gb|ABK86637.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus thuringiensis
           str. Al Hakam]
          Length = 524

 Score =  327 bits (838), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 183/448 (40%), Positives = 272/448 (60%), Gaps = 15/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++F++++YGCQMN +D+  M  +F + GYE   S +DAD+++LNTC IRE A  KV+  L
Sbjct: 81  RKFYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGEL 140

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G +++LK    +   DLL+ V GC++Q E    +I++++  V++V G    +RLP +L+ 
Sbjct: 141 GHLKSLK----RRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKD 196

Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           A F K  V   +S E D  E L  V     R+  + A++ I  GCDKFCT+C+VPYTRG 
Sbjct: 197 AMFSKETVVEVWSKEGDVIENLPKV-----RRGDIKAWVNIMYGCDKFCTYCIVPYTRGK 251

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR    ++ E R L  NG  EITLLGQNVNA+ GK  +  +    DL+  L ++  + 
Sbjct: 252 ERSRRPEDIIQEIRHLAANGYKEITLLGQNVNAY-GKDFEDIEYGLGDLMDELRKVD-IA 309

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHPRD  D LI+  G    L+ ++HLPVQSGS  +LK M R+++   Y +++ +
Sbjct: 310 RIRFTTSHPRDFDDHLIEVLGKGGNLVEHIHLPVQSGSTEMLKIMARKYSREHYLELVRK 369

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I+   P+  +++D IVGFP ETD+ F  TM L  ++G+  AF+F YSPR GTP + M + 
Sbjct: 370 IKEAIPNAVLTTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDN 429

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440
           V   VK ERL  L   + +  +  ND   GQI+EVL++   K   + L G +   + V  
Sbjct: 430 VPMEVKKERLQRLNALVNKLAIEKNDRYKGQIVEVLVDGESKNNPEVLAGYTRTNKLVNF 489

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
            +    IG ++KV++TD K  +L GELV
Sbjct: 490 VAPKSLIGQLVKVKVTDAKTWSLNGELV 517


>gi|65321098|ref|ZP_00394057.1| COG0621: 2-methylthioadenine synthetase [Bacillus anthracis str.
           A2012]
          Length = 524

 Score =  327 bits (838), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 182/448 (40%), Positives = 272/448 (60%), Gaps = 15/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++F++++YGCQMN +D+  M  +F + GYE   S +DAD+++LNTC IRE A  KV+  L
Sbjct: 81  RKFYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGEL 140

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G +++LK    +   DLL+ V GC++Q E    +I++++  V++V G    +RLP +L+ 
Sbjct: 141 GHLKSLK----RRNSDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKD 196

Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           A F K  V   +S E D  E L  V     R+  + A++ I  GCDKFCT+C+VPYTRG 
Sbjct: 197 AMFSKETVVEVWSKEGDVIENLPKV-----RRGDIKAWVNIMYGCDKFCTYCIVPYTRGK 251

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR    ++ E R L  NG  EITLLGQNVNA+ GK  +  +    DL+  L ++  + 
Sbjct: 252 ERSRRPEDIIQEIRHLAANGYKEITLLGQNVNAY-GKDFEDIEYGLGDLMDELRKVD-IA 309

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHPRD  D LI+  G    L+ ++HLPVQSGS  +LK M R+++   Y +++ +
Sbjct: 310 RIRFTTSHPRDFDDHLIEVLGKGGNLVEHIHLPVQSGSTEMLKIMARKYSREHYLELVRK 369

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I+   P+  +++D IVGFP ETD+ F  TM L  ++G+  AF+F YSPR GTP + M + 
Sbjct: 370 IKEAIPNAVLTTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDN 429

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440
           V   VK ERL  L   + +  +  ND   GQI+EVL++   K   + L G +   + V  
Sbjct: 430 VPMEVKKERLQRLNALVNKLAIEKNDRYKGQIVEVLVDGESKNNPEVLAGYTRTNKLVNF 489

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
            +    IG ++K+++TD K  +L GELV
Sbjct: 490 VAPKSLIGQLVKIKVTDAKTWSLNGELV 517


>gi|225850314|ref|YP_002730548.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Persephonella
           marina EX-H1]
 gi|225646637|gb|ACO04823.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Persephonella marina
           EX-H1]
          Length = 438

 Score =  327 bits (838), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 174/448 (38%), Positives = 283/448 (63%), Gaps = 19/448 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++++++++GCQMN+ DS +M  M  + GYE     +DAD+I++NTC +REK  +KV S L
Sbjct: 2   KKYYIRTFGCQMNINDSQKMAGMLKTLGYEPARDWEDADIILVNTCSVREKPDQKVLSAL 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           G  + +KN +     D ++ V GC+AQ  G EIL+++P V++V G    + LP+LLE A 
Sbjct: 62  GEFKKIKNKK----PDAVIGVCGCLAQRAGYEILQKAPFVDMVFGTTNIHHLPKLLEEAL 117

Query: 145 FGKRVV----DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
            G + V    D D + E + ++   V     R+   TA++T+  GCDK CT+C+VPYTRG
Sbjct: 118 QGNKAVEILEDIDQN-ETELDKYPTV-----RENRYTAYVTVMRGCDKKCTYCIVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E SR + +++ E + LID+GV EI L+GQNV A+   G D     F DLLY++++++G+
Sbjct: 172 KERSRRIGEILQEVQWLIDDGVKEIHLIGQNVTAY---GKDLGDVRFVDLLYAVADVEGV 228

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+TT HPRD+ +  IKA  ++  +  +LHLP+Q+GSDRILK+M R +T  EY + I+
Sbjct: 229 ERIRFTTGHPRDLDEETIKAMAEIPQICEHLHLPIQAGSDRILKAMERGYTQKEYLEKIE 288

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
            ++   PDI++S+D IVGFPGET +D+  T+ ++ ++ Y Q F+FKYSPR GTP + M  
Sbjct: 289 LLKKYIPDISLSTDIIVGFPGETYEDYMETIKVLKEVEYDQVFAFKYSPRPGTPAAQMPM 348

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440
             D    ++ L  L   L +++++F      +   V +    +++G+ VGR+   + V +
Sbjct: 349 TEDPKTLSKWLNDL--ILMQKEITFKKNLQYEGKTVEVLVEEEKEGRFVGRTRTNKLVHI 406

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
             +N+ +G+I+ V++T V   +L GE +
Sbjct: 407 EGRNNLLGEIVDVKVTKVNRFSLEGEAI 434


>gi|228986916|ref|ZP_04147043.1| hypothetical protein bthur0001_35910 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|229157351|ref|ZP_04285429.1| hypothetical protein bcere0010_35340 [Bacillus cereus ATCC 4342]
 gi|228626078|gb|EEK82827.1| hypothetical protein bcere0010_35340 [Bacillus cereus ATCC 4342]
 gi|228772865|gb|EEM21304.1| hypothetical protein bthur0001_35910 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
          Length = 509

 Score =  327 bits (837), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 183/448 (40%), Positives = 272/448 (60%), Gaps = 15/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++F++++YGCQMN +D+  M  +F + GYE   S +DAD+++LNTC IRE A  KV+  L
Sbjct: 66  RKFYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGEL 125

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G +++LK    +   DLL+ V GC++Q E    +I++++  V++V G    +RLP +L+ 
Sbjct: 126 GHLKSLK----RRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKD 181

Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           A F K  V   +S E D  E L  V     R+  + A++ I  GCDKFCT+C+VPYTRG 
Sbjct: 182 AMFSKETVVEVWSKEGDVIENLPKV-----RRGDIKAWVNIMYGCDKFCTYCIVPYTRGK 236

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR    ++ E R L  NG  EITLLGQNVNA+ GK  +  +    DL+  L ++  + 
Sbjct: 237 ERSRRPEDIIQEIRHLAANGYKEITLLGQNVNAY-GKDFEDIEYGLGDLMDELRKVD-IA 294

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHPRD  D LI+  G    L+ ++HLPVQSGS  +LK M R+++   Y +++ +
Sbjct: 295 RIRFTTSHPRDFDDHLIEVLGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRK 354

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I+   P+  +++D IVGFP ETD+ F  TM L  ++G+  AF+F YSPR GTP + M + 
Sbjct: 355 IKEAIPNAVLTTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDN 414

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440
           V   VK ERL  L   + +  +  ND   GQI+EVL++   K   + L G +   + V  
Sbjct: 415 VPMEVKKERLQRLNALVNKLAIEKNDRYKGQIVEVLVDGESKNNPEVLAGYTRTNKLVNF 474

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
            +    IG ++KV++TD K  +L GELV
Sbjct: 475 VAPKSLIGQLVKVKVTDAKTWSLNGELV 502


>gi|49478367|ref|YP_037833.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|52141716|ref|YP_085113.1| tRNA 2-methylthioadenine synthetase [Bacillus cereus E33L]
 gi|196038441|ref|ZP_03105750.1| conserved hypothetical protein [Bacillus cereus NVH0597-99]
 gi|81395139|sp|Q6HF43|MIAB_BACHK RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|81686624|sp|Q636Q4|MIAB_BACCZ RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|49329923|gb|AAT60569.1| conserved hypothetical protein, possible tRNA 2-methylthioadenine
           synthetase [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|51975185|gb|AAU16735.1| conserved hypothetical protein; possible tRNA 2-methylthioadenine
           synthetase [Bacillus cereus E33L]
 gi|196030849|gb|EDX69447.1| conserved hypothetical protein [Bacillus cereus NVH0597-99]
          Length = 509

 Score =  327 bits (837), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 183/448 (40%), Positives = 271/448 (60%), Gaps = 15/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++F++++YGCQMN +D+  M  +F + GYE   S +DAD+++LNTC IRE A  KV+  L
Sbjct: 66  RKFYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGEL 125

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G ++ LK    +   DLL+ V GC++Q E    +I++++  V++V G    +RLP +L+ 
Sbjct: 126 GHLKALK----RRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKD 181

Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           A F K  V   +S E D  E L  V     R+  + A++ I  GCDKFCT+C+VPYTRG 
Sbjct: 182 AMFSKETVVEVWSKEGDVIENLPKV-----RRGDIKAWVNIMYGCDKFCTYCIVPYTRGK 236

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR    ++ E R L  NG  EITLLGQNVNA+ GK  +  +    DL+  L ++  + 
Sbjct: 237 ERSRRPEDIIQEIRHLAANGYKEITLLGQNVNAY-GKDFEDIEYGLGDLMDELRKVD-IA 294

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHPRD  D LI+  G    L+ ++HLPVQSGS  +LK M R+++   Y +++ +
Sbjct: 295 RIRFTTSHPRDFDDHLIEVLGKGGNLVEHIHLPVQSGSTEMLKIMARKYSREHYLELVRK 354

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I+   P+  +++D IVGFP ETD+ F  TM L  ++G+  AF+F YSPR GTP + M + 
Sbjct: 355 IKEAIPNAVLTTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDN 414

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440
           V   VK ERL  L   + +  +  ND   GQI+EVL++   K   + L G +   + V  
Sbjct: 415 VPMEVKKERLQRLNALVNKLAIEKNDRYKGQIVEVLVDGESKNNPEVLAGYTRTNKLVNF 474

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
            +    IG ++KV++TD K  +L GELV
Sbjct: 475 VAPKSLIGQLVKVKVTDAKTWSLNGELV 502


>gi|229012956|ref|ZP_04170121.1| hypothetical protein bmyco0001_33940 [Bacillus mycoides DSM 2048]
 gi|228748210|gb|EEL98070.1| hypothetical protein bmyco0001_33940 [Bacillus mycoides DSM 2048]
          Length = 509

 Score =  326 bits (836), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 184/448 (41%), Positives = 272/448 (60%), Gaps = 15/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++F++++YGCQMN +D+  M  +F + GYE   S ++AD+I+LNTC IRE A  KV+  L
Sbjct: 66  RKFYIRTYGCQMNEHDTEVMAGIFTTLGYEPTFSTEEADVILLNTCAIRENAENKVFGEL 125

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G +++LK    +   DL++ V GC++Q E    +I++++  V++V G    +RLP +L+ 
Sbjct: 126 GHLKSLK----RRNPDLIIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKD 181

Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           A F K  V   +S E D  E L  V     R+  + A++ I  GCDKFCT+C+VPYTRG 
Sbjct: 182 AMFSKETVVEVWSKEGDVIENLPKV-----RRGDIKAWVNIMYGCDKFCTYCIVPYTRGK 236

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR    ++ E R L  NG  EITLLGQNVNA+ GK  +  +    DL+  L +I  + 
Sbjct: 237 ERSRRPEDIIKEIRHLAANGYKEITLLGQNVNAY-GKDFEDIQYGLGDLMDELRKI-DIA 294

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHPRD  + LI   G    L+ ++HLPVQSGS  +LK M R+++   Y +++ +
Sbjct: 295 RIRFTTSHPRDFDNHLIDVLGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRK 354

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I+   P+  +++D IVGFP ETD+ F  TM L  ++G+  AF+F YSPR GTP + M + 
Sbjct: 355 IKETIPNAVLTTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMQDN 414

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440
           V   VK ERL  L   + E  V+ N   +GQI+EVL+E   K   + L G +   + V  
Sbjct: 415 VPMEVKKERLQRLNTLVNEYAVNKNKRYIGQIVEVLVEGESKNNPEVLAGYTRTNKLVNF 474

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
            +    IG ++KV+IT+ K  +L GELV
Sbjct: 475 VASKSLIGQLVKVKITEAKTWSLNGELV 502


>gi|218234533|ref|YP_002368575.1| hypothetical protein BCB4264_A3871 [Bacillus cereus B4264]
 gi|229890421|sp|B7HDP7|MIAB_BACC4 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|218162490|gb|ACK62482.1| conserved hypothetical protein [Bacillus cereus B4264]
          Length = 509

 Score =  326 bits (836), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 183/448 (40%), Positives = 271/448 (60%), Gaps = 15/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++F++++YGCQMN +D+  M  +F + GYE   S +DAD+++LNTC IRE A  KV+  L
Sbjct: 66  RKFYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGEL 125

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G +++LK    +   DLL+ V GC++Q E    +I++++  V++V G    +RLP +L+ 
Sbjct: 126 GHLKSLK----RRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKD 181

Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           A F K  V   +S E D  E L  V     R+  + A++ I  GCDKFCT+C+VPYTRG 
Sbjct: 182 AMFSKETVVEVWSKEGDVIENLPKV-----RRGDIKAWVNIMYGCDKFCTYCIVPYTRGK 236

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR    ++ E R L  NG  EITLLGQNVNA+ GK  +  +    DL+  L ++  + 
Sbjct: 237 ERSRRPEDIIQEIRHLAANGYKEITLLGQNVNAY-GKDFEDIEYGLGDLMDELRKVD-IA 294

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHPRD  D LI+  G    L+ ++HLPVQSGS  +LK M R+++   Y +++ +
Sbjct: 295 RIRFTTSHPRDFDDHLIEVLGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRK 354

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I+   PD+ +++D IVGFP ETD+ F  TM L  ++G+  AF+F YSPR GTP + M + 
Sbjct: 355 IKEAIPDVVLTTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDN 414

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440
           V   VK ERL  L   +    +  N    GQI+EVL++   K   + L G +   + V  
Sbjct: 415 VPMEVKKERLQRLNTLVNTLAIEKNSRYKGQIVEVLVDGESKNNPEVLAGYTRTNKLVNF 474

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
            +    IG ++KV+IT+ K  +L GELV
Sbjct: 475 VASKSLIGQLVKVKITEAKTWSLNGELV 502


>gi|229071269|ref|ZP_04204493.1| hypothetical protein bcere0025_34430 [Bacillus cereus F65185]
 gi|229081024|ref|ZP_04213537.1| hypothetical protein bcere0023_36650 [Bacillus cereus Rock4-2]
 gi|228702338|gb|EEL54811.1| hypothetical protein bcere0023_36650 [Bacillus cereus Rock4-2]
 gi|228711890|gb|EEL63841.1| hypothetical protein bcere0025_34430 [Bacillus cereus F65185]
          Length = 509

 Score =  326 bits (836), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 183/448 (40%), Positives = 271/448 (60%), Gaps = 15/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++F++++YGCQMN +D+  M  +F + GYE   S +DAD+++LNTC IRE A  KV+  L
Sbjct: 66  RKFYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGEL 125

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G +++LK    +   DLL+ V GC++Q E    +I++++  V++V G    +RLP +L+ 
Sbjct: 126 GHLKSLK----RRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKD 181

Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           A F K  V   +S E D  E L  V     R+  + A++ I  GCDKFCT+C+VPYTRG 
Sbjct: 182 AMFSKETVVEVWSKEGDVIENLPKV-----RRGDIKAWVNIMYGCDKFCTYCIVPYTRGK 236

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR    ++ E R L  NG  EITLLGQNVNA+ GK  +  +    DL+  L ++  + 
Sbjct: 237 ERSRRPEDIIQEIRHLAANGYKEITLLGQNVNAY-GKDFEDIEYGLGDLMDELRKV-DIA 294

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHPRD  D LI+  G    L+ ++HLPVQSGS  +LK M R+++   Y +++ +
Sbjct: 295 RIRFTTSHPRDFDDHLIEVLGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRK 354

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I+   PD+ +++D IVGFP ETD+ F  TM L  ++G+  AF+F YSPR GTP + M + 
Sbjct: 355 IKEAIPDVVLTTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDN 414

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440
           V   VK ERL  L   +    +  N    GQI+EVL++   K   + L G +   + V  
Sbjct: 415 VPMQVKKERLQRLNTLVNTLAIEKNSRYKGQIVEVLVDGESKNNPEVLAGYTRTNKLVNF 474

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
            +    IG ++KV+IT+ K  +L GELV
Sbjct: 475 VASKSLIGQLVKVKITEAKTWSLNGELV 502


>gi|228954049|ref|ZP_04116078.1| hypothetical protein bthur0006_34210 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228805615|gb|EEM52205.1| hypothetical protein bthur0006_34210 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
          Length = 509

 Score =  326 bits (836), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 183/448 (40%), Positives = 271/448 (60%), Gaps = 15/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++F++++YGCQMN +D+  M  +F + GYE   S +DAD+++LNTC IRE A  KV+  L
Sbjct: 66  RKFYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGEL 125

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G +++LK    +   DLL+ V GC++Q E    +I++++  V++V G    +RLP +L+ 
Sbjct: 126 GHLKSLK----RRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKD 181

Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           A F K  V   +S E D  E L  V     R+  + A++ I  GCDKFCT+C+VPYTRG 
Sbjct: 182 AMFSKETVVEVWSKEGDVIENLPKV-----RRGDIKAWVNIMYGCDKFCTYCIVPYTRGK 236

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR    ++ E R L  NG  EITLLGQNVNA+ GK  +  +    DL+  L ++  + 
Sbjct: 237 ERSRRPEDIIQEIRHLAANGYKEITLLGQNVNAY-GKDFEDIEYGLGDLMDELRKV-DIA 294

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHPRD  D LI+  G    L+ ++HLPVQSGS  +LK M R+++   Y +++ +
Sbjct: 295 RIRFTTSHPRDFDDHLIEVLGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRK 354

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I+   PD+ +++D IVGFP ETD+ F  TM L  ++G+  AF+F YSPR GTP + M + 
Sbjct: 355 IKEAIPDVVLTTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDN 414

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440
           V   VK ERL  L   +    +  N    GQI+EVL++   K   + L G +   + V  
Sbjct: 415 VPMEVKKERLQRLNTLVNTLAIEKNSRYKGQIVEVLVDGESKNNPEVLAGYTRTNKLVNF 474

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
            +    IG ++KV+IT+ K  +L GELV
Sbjct: 475 VASKSLIGQLVKVKITEAKTWSLNGELV 502


>gi|197117156|ref|YP_002137583.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Geobacter
           bemidjiensis Bem]
 gi|229890543|sp|B5EE49|MIAB_GEOBB RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|197086516|gb|ACH37787.1| tRNA (2-methylthio-N6-dimethylallyl-A37) methylthiotransferase
           [Geobacter bemidjiensis Bem]
          Length = 441

 Score =  326 bits (835), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 178/448 (39%), Positives = 273/448 (60%), Gaps = 17/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ +++++GCQMNV DS ++  +    GY++     DADL++LNTC IR  A ++VY  L
Sbjct: 5   KKLYLETFGCQMNVSDSEKIVTLMKGMGYQQTQDPVDADLVLLNTCSIRATAEQRVYGHL 64

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           G+ +++K  + K G  L++ V GCVAQ EGE++L+++P VN+V G    + L  ++  A 
Sbjct: 65  GKFKSIK--KTKPG--LIIGVGGCVAQQEGEKLLKKAPFVNLVFGTHNLHLLQGMVAAAE 120

Query: 145 FGKRVVDTDY-SVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            GKR   TD+   E +F+     +     + GVT F+T+ +GCD FC +C+VP+ RG EI
Sbjct: 121 EGKRSSQTDFLDDEKRFDLFPHSEA----EGGVTRFVTVMQGCDNFCAYCIVPHVRGREI 176

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SRS ++VV+E R L D+GV E+TLLGQNVN++  K   GE   F DLL  ++++ G+ R+
Sbjct: 177 SRSAAKVVEEVRALADSGVTEVTLLGQNVNSYCSK-QPGEP-DFPDLLRLVAQVDGIERI 234

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+TTSHP+DMS  LI+   DL  L P++HLP QSGSDR+L+ MNR +TA +Y   +  ++
Sbjct: 235 RFTTSHPKDMSPRLIECFADLPKLAPHIHLPAQSGSDRVLERMNRGYTAQQYLAKVAALK 294

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              P I  + D IVGFPGE +  F+ TM L++++ YA  FSF YS R   PG+   E  D
Sbjct: 295 EACPAIQFTGDMIVGFPGEDEAAFQDTMALMEQVQYADLFSFIYSAR---PGTKAAEYAD 351

Query: 384 ENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440
           +  +AE   RL  LQ   ++  ++ N +  G + +VL+E        L GR+   +  V+
Sbjct: 352 DATRAEKQGRLERLQAAQKKTTLARNRSLEGTVQKVLVEGLSSTGDSLFGRTGGNRGTVM 411

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                  G ++ V+I +   + L GE+V
Sbjct: 412 AGDPSLAGRVLDVKIVEGLQTLLKGEIV 439


>gi|206972613|ref|ZP_03233555.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus AH1134]
 gi|229180049|ref|ZP_04307393.1| hypothetical protein bcere0005_33950 [Bacillus cereus 172560W]
 gi|229191897|ref|ZP_04318867.1| hypothetical protein bcere0002_35540 [Bacillus cereus ATCC 10876]
 gi|206732426|gb|EDZ49606.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus AH1134]
 gi|228591448|gb|EEK49297.1| hypothetical protein bcere0002_35540 [Bacillus cereus ATCC 10876]
 gi|228603258|gb|EEK60735.1| hypothetical protein bcere0005_33950 [Bacillus cereus 172560W]
          Length = 509

 Score =  326 bits (835), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 183/448 (40%), Positives = 271/448 (60%), Gaps = 15/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++F++++YGCQMN +D+  M  +F + GYE   S +DAD+++LNTC IRE A  KV+  L
Sbjct: 66  RKFYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGEL 125

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G +++LK    +   DLL+ V GC++Q E    +I++++  V++V G    +RLP +L+ 
Sbjct: 126 GHLKSLK----RRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKD 181

Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           A F K  V   +S E D  E L  V     R+  + A++ I  GCDKFCT+C+VPYTRG 
Sbjct: 182 AMFSKETVVEVWSKEGDVIENLPKV-----RRGDIKAWVNIMYGCDKFCTYCIVPYTRGK 236

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR    ++ E R L  NG  EITLLGQNVNA+ GK  +  +    DL+  L ++  + 
Sbjct: 237 ERSRRPEDIIQEIRHLAANGYKEITLLGQNVNAY-GKDFEDIEYGLGDLMDELRKV-DIA 294

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHPRD  D LI+  G    L+ ++HLPVQSGS  +LK M R+++   Y +++ +
Sbjct: 295 RIRFTTSHPRDFDDHLIEVLGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRK 354

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I+   PD+ +++D IVGFP ETD+ F  TM L  ++G+  AF+F YSPR GTP + M + 
Sbjct: 355 IKEAIPDVVLTTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDN 414

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440
           V   VK ERL  L   +    +  N    GQI+EVL++   K   + L G +   + V  
Sbjct: 415 VPMEVKKERLQRLNTLVNTLAIEKNSRYKGQIVEVLVDGESKNNPEVLAGYTRTNKLVNF 474

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
            +    IG ++KV+IT+ K  +L GELV
Sbjct: 475 VASKSLIGQLVKVKITEAKTWSLNGELV 502


>gi|148981402|ref|ZP_01816398.1| hypothetical protein VSWAT3_09558 [Vibrionales bacterium SWAT-3]
 gi|145960894|gb|EDK26224.1| hypothetical protein VSWAT3_09558 [Vibrionales bacterium SWAT-3]
          Length = 432

 Score =  326 bits (835), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 179/407 (43%), Positives = 261/407 (64%), Gaps = 11/407 (2%)

Query: 64  LIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPI 123
           +++LNTC IREKA EKV+  LGR + LK+ +      +++ V GCVA  EG+ I +R+P 
Sbjct: 1   VLLLNTCSIREKAQEKVFHQLGRWKTLKDKK----EGVVIGVGGCVATQEGDHIRQRAPY 56

Query: 124 VNVVVGPQTYYRLPELLERARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTI 182
           V+V+ GPQT +RLPE+++ +   +  V+D  +   +KF+ L        R  G TAF++I
Sbjct: 57  VDVIFGPQTLHRLPEMIKSSLSNEAPVMDISFPEIEKFDSLP-----EPRAEGATAFVSI 111

Query: 183 QEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG 242
            EGC K+CT+CVVPYTRG E+SR +  V+ E  +L + GV E+ LLGQNVNA+RG   +G
Sbjct: 112 MEGCSKYCTYCVVPYTRGEEVSRPMDDVLFEVAQLAEQGVREVNLLGQNVNAYRGPTHEG 171

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
           + CTF++LL  ++ I G+ R+R+TTSHP +  D +I  + D   L+ +LHLPVQSGSDRI
Sbjct: 172 DICTFAELLRLVASIDGIDRIRFTTSHPLEFGDDIIAVYEDTPELVSFLHLPVQSGSDRI 231

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           L  M R HTA EY+ II ++R  RPDI ISSDFIVGFPGE++ DF+ TM L+ ++ +  +
Sbjct: 232 LTMMKRPHTAIEYKSIIRKLRKARPDIQISSDFIVGFPGESNQDFQDTMKLIKEVDFDMS 291

Query: 363 FSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422
           FSF +SPR GTP ++    V E  K +RL  LQ+ +  Q + ++   +G    VL+E   
Sbjct: 292 FSFIFSPRPGTPAADYPCDVPEQEKKDRLYELQQTVNTQAMRYSRLMLGTEQRVLVEGPS 351

Query: 423 KEK-GKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           K+   +L  R+   + V        IG  + V+IT+V  ++L GE+V
Sbjct: 352 KKNLMELRARTENSRVVNFEGSADLIGQFVDVKITEVFANSLRGEVV 398


>gi|47568277|ref|ZP_00238980.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus G9241]
 gi|47555105|gb|EAL13453.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus G9241]
          Length = 509

 Score =  326 bits (835), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 182/448 (40%), Positives = 272/448 (60%), Gaps = 15/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++F++++YGCQMN +D+  M  +F + GYE   S +DAD+++LNTC IRE A  KV+  L
Sbjct: 66  RKFYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGEL 125

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G +++LK    +   DLL+ V GC++Q E    +I++++  V++V G    +RLP +L+ 
Sbjct: 126 GHLKSLK----RRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKD 181

Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           A F K  V   +S E D  E L  V     R+  + A++ I  GCDKFCT+C+VPYTRG 
Sbjct: 182 AMFSKETVVEVWSKEGDVIENLPKV-----RRGDIKAWVNIMYGCDKFCTYCIVPYTRGK 236

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR    ++ E R L  NG  EITLLGQNVNA+ GK  +  +    DL+  L ++  + 
Sbjct: 237 ERSRRPEDIIQEIRHLAANGYKEITLLGQNVNAY-GKDFEDIEYGLGDLMDELRKV-DIA 294

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHPRD  D LI+  G    L+ ++HLPVQSGS  +LK M R+++   Y +++ +
Sbjct: 295 RIRFTTSHPRDFDDHLIEVLGKGGNLVEHIHLPVQSGSTEMLKIMARKYSREHYLELVRK 354

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I+   P+  +++D IVGFP ETD+ F  TM L  ++G+  AF+F YSPR GTP + M + 
Sbjct: 355 IKEAIPNAVLTTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDN 414

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440
           V   VK +RL  L   + +  +  ND   GQI+EVL++   K   + L G +   + V  
Sbjct: 415 VPMEVKKKRLQRLNALVNKLAIEKNDRYKGQIVEVLVDGESKNNPEVLAGYTRTNKLVNF 474

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
            +    IG ++KV++TD K  +L GELV
Sbjct: 475 VAPKSLIGQLVKVKVTDAKTWSLNGELV 502


>gi|220929121|ref|YP_002506030.1| RNA modification enzyme, MiaB family [Clostridium cellulolyticum
           H10]
 gi|219999449|gb|ACL76050.1| RNA modification enzyme, MiaB family [Clostridium cellulolyticum
           H10]
          Length = 478

 Score =  326 bits (835), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 178/451 (39%), Positives = 277/451 (61%), Gaps = 21/451 (4%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P R+ ++++GCQMN  DS R+  M    GY   +   D+DLI+ NTC +RE A +KVY  
Sbjct: 40  PVRYIIETFGCQMNENDSERLSGMLSGMGYSECSERKDSDLIIFNTCCVRENAEQKVYGH 99

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLE 141
           LG ++ LK +      +L++ + GC+ Q +   E I +    V++V G    Y+ PELL 
Sbjct: 100 LGALKKLKET----NPNLIIAICGCMMQQKDVVEHIKKTYKHVDIVFGTHNLYKFPELLN 155

Query: 142 RARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
            A   +  V+D   S     E + I     +RK  + A++T+  GC+ FC++C+VPY RG
Sbjct: 156 TAITTRSTVIDVWDSTGSIAENMPI-----SRKENIKAWVTVMYGCNNFCSYCIVPYVRG 210

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E SRSL ++ +E  KL  +G  EITLLGQNVN++ GK L+G+  TF+ LL  L++++G+
Sbjct: 211 RERSRSLEEIKNEVEKLAKDGCKEITLLGQNVNSY-GKDLEGD-LTFAGLLRELNKVQGI 268

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+ TSHP+D+SD LI A  D + +  +LHLPVQ+GS +IL  MNRR++  +Y  +I+
Sbjct: 269 ERIRFMTSHPKDLSDELIYAMRDCEKVCEHLHLPVQAGSSKILDEMNRRYSKEQYLGLIE 328

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           +++S  P IA+++D IVGFPGET++DF  T+D+V K  +  A++F YS R GTP +   E
Sbjct: 329 KVKSNIPGIALTTDIIVGFPGETEEDFNETLDVVAKARFDMAYTFLYSKRTGTPAAKNPE 388

Query: 381 QVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQ 436
           Q+ E VK +   RLL LQ K+ ++    ND  +G+ +EVL+E   K  K    GR+   +
Sbjct: 389 QIPETVKKQRFDRLLELQNKISKE---INDGLLGKELEVLVEGLSKSSKTTYTGRTRENK 445

Query: 437 SVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
            V        +G ++KV+I +++  +L G++
Sbjct: 446 IVNFKGSPDMVGKLVKVKIEEIQTWSLLGKI 476


>gi|229544354|ref|ZP_04433413.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus coagulans 36D1]
 gi|229325493|gb|EEN91169.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus coagulans 36D1]
          Length = 515

 Score =  325 bits (834), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 179/448 (39%), Positives = 269/448 (60%), Gaps = 15/448 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +F++++YGCQMN +D+  M  +F   GY    +++DAD+++LNTC IRE A  KV+  +G
Sbjct: 70  KFYIRTYGCQMNEHDTEVMAGIFMQLGYTPTETVEDADVVLLNTCAIRENAENKVFGEIG 129

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERA 143
            ++ LK     E  D+L+ V GC++Q E    +IL++ P V++V G    +RLP +L+ A
Sbjct: 130 HLKPLKT----EKPDMLIGVCGCMSQEESVVNKILQKHPHVDMVFGTHNIHRLPHILKEA 185

Query: 144 RFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
              K +V   +S E D  E L  V     RK  + A++ I  GCDKFCT+C+VPYTRG E
Sbjct: 186 YMSKAMVVEVWSKEGDVIESLPKV-----RKGNIKAWVNIMYGCDKFCTYCIVPYTRGKE 240

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR    ++ E R+L   G  EITLLGQNVNA+ GK  D  +    DL+  L +I  + R
Sbjct: 241 RSRRPEDIIQEVRELAAKGYKEITLLGQNVNAY-GKDFDDLEYGLGDLMDDLRKI-NIPR 298

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHPRD  D LI+       L+ ++HLPVQSGS  ILK M R++T  +Y +++ +I
Sbjct: 299 IRFTTSHPRDFDDRLIEVLAKKGNLVEHIHLPVQSGSSEILKIMGRKYTREQYLELVRKI 358

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           ++  PD+A+S+D IVGFP ET++ F  T+ L  ++G+  A++F YSPR GTP + M + +
Sbjct: 359 KAAIPDVALSTDIIVGFPNETEEQFEETLSLYKEVGFETAYTFIYSPREGTPAARMKDNI 418

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVLN 441
              VK ERL  L + +     +  +   GQ++EVL+E   K   + L G +   + V   
Sbjct: 419 PMEVKKERLQRLNELVNAYSKAAMEKYEGQVVEVLVEGESKNNPEILAGYTRKNKLVNFK 478

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELVV 469
                IG +++V+IT  K  +L GE+V 
Sbjct: 479 GPKSAIGKLVQVKITKAKTWSLDGEMVA 506


>gi|228992460|ref|ZP_04152388.1| hypothetical protein bpmyx0001_32010 [Bacillus pseudomycoides DSM
           12442]
 gi|229000596|ref|ZP_04160136.1| hypothetical protein bmyco0003_51290 [Bacillus mycoides Rock3-17]
 gi|229006018|ref|ZP_04163707.1| hypothetical protein bmyco0002_29390 [Bacillus mycoides Rock1-4]
 gi|228755217|gb|EEM04573.1| hypothetical protein bmyco0002_29390 [Bacillus mycoides Rock1-4]
 gi|228759151|gb|EEM08157.1| hypothetical protein bmyco0003_51290 [Bacillus mycoides Rock3-17]
 gi|228767281|gb|EEM15916.1| hypothetical protein bpmyx0001_32010 [Bacillus pseudomycoides DSM
           12442]
          Length = 509

 Score =  325 bits (834), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 184/448 (41%), Positives = 271/448 (60%), Gaps = 15/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++F++++YGCQMN +D+  M  +F + GYE   S +DAD+I+LNTC IRE A  KV+  L
Sbjct: 66  RKFYIRTYGCQMNEHDTEVMAGIFTTLGYEPTFSTEDADVILLNTCAIRENAENKVFGEL 125

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G ++ LK    +   DLL+ V GC++Q E    +I++++  V++V G    +RLP +L+ 
Sbjct: 126 GHLKPLK----QRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKD 181

Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           A F K  V   +S E D  E L  V     R+  + A++ I  GCDKFCT+C+VPYTRG 
Sbjct: 182 AMFSKATVVEVWSKEGDVIENLPKV-----RRGDIKAWVNIMYGCDKFCTYCIVPYTRGK 236

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR    +++E R L  NG  EITLLGQNVNA+ GK  +  +    DL+  L +I  + 
Sbjct: 237 ERSRRPEDIINEIRHLAANGYKEITLLGQNVNAY-GKDFEDLEYGLGDLMDELRKID-IA 294

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHPRD  D LI+  G    L+ ++HLPVQSGS  +LK M R+++   Y +++ +
Sbjct: 295 RVRFTTSHPRDFDDHLIEVLGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRK 354

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I+   P+  +++D IVGFP ETD+ F  TM L  ++G+  AF+F YSPR GTP + M + 
Sbjct: 355 IKEAIPNAVLTTDIIVGFPNETDEQFEETMSLYREVGFDSAFTFIYSPREGTPAAKMKDN 414

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440
           V   VK ERL  L   + E  +  N    GQI+EVL++   K     L G +   + V  
Sbjct: 415 VPMEVKKERLQRLNALVNEYSMEKNKRYKGQIVEVLVDGESKNNPDVLAGYTRTNKLVNF 474

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
            +  + IG ++KV++T+ K  +L GELV
Sbjct: 475 VAPKYAIGQLVKVKVTEAKTWSLNGELV 502


>gi|237668852|ref|ZP_04528836.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Clostridium butyricum E4
           str. BoNT E BL5262]
 gi|237657200|gb|EEP54756.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Clostridium butyricum E4
           str. BoNT E BL5262]
          Length = 456

 Score =  325 bits (833), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 181/447 (40%), Positives = 271/447 (60%), Gaps = 17/447 (3%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           FF++++GCQMN  DS ++  M   QGY      ++A +I+ NTC +RE A  KV+  LGR
Sbjct: 21  FFIQTFGCQMNEEDSEKLSGMLKRQGYTPTEDKEEASIIIFNTCCVRENAENKVFGNLGR 80

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           ++     R +   DL++ + GC+ Q +G  ++IL   P V+++ G    Y+ PE L R +
Sbjct: 81  LK----KRKENNPDLIIAICGCMMQQKGMADKILNEYPYVDIIFGTHNSYKFPEYLNRVK 136

Query: 145 FGKRVVDTDYSVEDKFER-LSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
                      +++ F++   IV+G   +RK  V AF+T+  GC+ FCT+CVVPY RG E
Sbjct: 137 ------TEGVQIKEIFDKEAEIVEGVPIDRKSSVKAFVTVMYGCNNFCTYCVVPYVRGRE 190

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR    + +E + L+  G  EITLLGQNVN++ GKGL+ E+ TF+ LL  ++EI+GL R
Sbjct: 191 RSRKPQDIENEIKGLVAEGYKEITLLGQNVNSY-GKGLE-EEITFAQLLRRINEIEGLER 248

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+ TSHP+D++  +I+A  D D L   +HLP+QSGSD+ILK MNR +T   Y  +   I
Sbjct: 249 VRFMTSHPKDLNMDVIEAIRDCDKLCEQIHLPIQSGSDQILKVMNRHYTRDYYLNLAKAI 308

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R   PD+  S+D IVGFPGET++DF+AT+DLV ++ Y  AF+F YS R  TP   M  Q+
Sbjct: 309 RKEIPDVTFSTDLIVGFPGETEEDFQATLDLVREVKYDAAFTFIYSRRNHTPADKMENQI 368

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVLN 441
            ++VK ER   L + + E  V  N A  G+++EVL+E   K ++ +L GR+   + V   
Sbjct: 369 PDDVKHERFNRLVEAVNEGIVVGNKAMEGKVVEVLVEGTSKNDESRLTGRTRNAKLVNFP 428

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                IG ++ V+I      +L GE+V
Sbjct: 429 GCKELIGKLVNVKIVKANSFSLVGEIV 455


>gi|228959979|ref|ZP_04121644.1| hypothetical protein bthur0005_34510 [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228799722|gb|EEM46674.1| hypothetical protein bthur0005_34510 [Bacillus thuringiensis
           serovar pakistani str. T13001]
          Length = 509

 Score =  325 bits (833), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 183/448 (40%), Positives = 270/448 (60%), Gaps = 15/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++F++++YGCQMN +D+  M  +F + GYE   S +DAD+++LNTC IRE A  KV+  L
Sbjct: 66  RKFYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGEL 125

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G +++LK    +   DLL+ V GC++Q E    +I++++  V++V G    +RLP +L+ 
Sbjct: 126 GHLKSLK----RRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKD 181

Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           A F K  V   +S E D  E L  V     R+  + A++ I  GCDKFCT+C+VPYTRG 
Sbjct: 182 AMFSKETVVEVWSKEGDVIENLPKV-----RRGDIKAWVNIMYGCDKFCTYCIVPYTRGK 236

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR    ++ E R L  NG  EITLLGQNVNA+ GK  +  +    DL+  L ++  + 
Sbjct: 237 ERSRRPEDIIQEIRHLAANGYKEITLLGQNVNAY-GKDFEDIEYGLGDLMDELRKVD-IA 294

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHPRD  D LI+  G    L+ ++HLPVQSGS  +LK M R+++   Y +++ +
Sbjct: 295 RIRFTTSHPRDFDDHLIEVLGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRK 354

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I+   PD  +++D IVGFP ETD+ F  TM L  ++G+  AF+F YSPR GTP + M + 
Sbjct: 355 IKEAIPDAVLTTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDN 414

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440
           V   VK ERL  L   +    +  N    GQI+EVL++   K   + L G +   + V  
Sbjct: 415 VPMEVKKERLQRLNTLVNTLAIEKNSRYKGQIVEVLVDGESKNNSEVLAGYTRTNKLVNF 474

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
            +    IG ++KV+IT+ K  +L GELV
Sbjct: 475 VASKSLIGQLVKVKITEAKTWSLNGELV 502


>gi|289522346|ref|ZP_06439200.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
 gi|289504182|gb|EFD25346.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
          Length = 453

 Score =  325 bits (833), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 183/445 (41%), Positives = 272/445 (61%), Gaps = 15/445 (3%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           F +  YGCQMN YD  R+      +G+   +  ++AD +V+ TC IREKA +KV S +GR
Sbjct: 8   FAIDIYGCQMNQYDGDRLRTSLIRRGWIETDR-NEADAVVIVTCSIREKAEQKVLSEIGR 66

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
              L  ++    G  L+ V GC+AQ  G ++LRR P V VV GP+    +P+ LE A   
Sbjct: 67  YGKLYKTK----GKPLLAVIGCMAQNMGADLLRRFPQVKVVAGPRHIGWVPDALENAMRH 122

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           K V+   Y  ED  E + + D    R     AF+TI  GCD FCT+C+VPY RG  +SR 
Sbjct: 123 KTVL---YLDEDPREMIDLHDAPMIRSNPYKAFVTIAHGCDNFCTYCIVPYVRGRFVSRR 179

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
             +++ E  +L+D+GV E+TLLGQNV+++ GK L  E   FS+LL  ++++ GL+R+R+T
Sbjct: 180 PGEILKEVSELVDDGVLEVTLLGQNVDSY-GKDLK-ESYRFSNLLQDVAKVPGLLRVRFT 237

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
           TSHPRD ++ +I+A  +   + P ++LP+QSGSDRILK MNR +T  +Y +II R+R   
Sbjct: 238 TSHPRDFTEDVIEAMAEESKICPAVNLPIQSGSDRILKKMNRGYTVEDYGRIIKRLREAL 297

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           P+++I+SD IVGFPGET++DF+ T++++  + +    +  YSPR GTP +NM  Q+ E  
Sbjct: 298 PEVSITSDLIVGFPGETEEDFQCTLEMLKTMEFDLVHTASYSPREGTPAANMSNQIPEEE 357

Query: 387 KAERLLCLQKKLREQQVSF--NDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLNSK 443
           K  RL  + +   +  +SF  N    G+  EVL++    K KG L GR+P  + V++   
Sbjct: 358 KKRRLSIVNE--LQDAISFKKNKILEGKFFEVLLDDFAPKGKGMLQGRTPTDKVVLVPGD 415

Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468
              +G + +VRIT      LYGE+V
Sbjct: 416 ESMLGKLCEVRITGASNWYLYGEIV 440


>gi|229086321|ref|ZP_04218499.1| hypothetical protein bcere0022_29080 [Bacillus cereus Rock3-44]
 gi|228697016|gb|EEL49823.1| hypothetical protein bcere0022_29080 [Bacillus cereus Rock3-44]
          Length = 509

 Score =  325 bits (833), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 184/448 (41%), Positives = 269/448 (60%), Gaps = 15/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++F++++YGCQMN +D+  M  +F + GYE   S  DAD+I+LNTC IRE A  KV+  L
Sbjct: 66  RKFYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTKDADVILLNTCAIRENAENKVFGEL 125

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G ++ LK    +   DLL+ V GC++Q E    +I++++  V++V G    +RLP +L+ 
Sbjct: 126 GHLKPLK----QRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKD 181

Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           A F K  V   +S E D  E L  V     R+  + A++ I  GCDKFCT+C+VPYTRG 
Sbjct: 182 AMFSKATVVEVWSKEGDVIENLPKV-----RRGDIKAWVNIMYGCDKFCTYCIVPYTRGK 236

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR    +++E R L  NG  EITLLGQNVNA+ GK  +  +    DL+  L +I  + 
Sbjct: 237 ERSRRPEDIINEIRHLAANGYKEITLLGQNVNAY-GKDFEDLEYGLGDLMDELRKID-IA 294

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHPRD  D LI+  G    L+ ++HLPVQSGS  +LK M R+++   Y +++ +
Sbjct: 295 RVRFTTSHPRDFDDHLIEVLGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRK 354

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I+   P+  +++D IVGFP ETD+ F  TM L  ++G+  AF+F YSPR GTP + M + 
Sbjct: 355 IKEAIPNAVLTTDIIVGFPNETDEQFEETMSLYREVGFDSAFTFIYSPREGTPAAKMKDN 414

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440
           V   VK ERL  L   + E  +  N   VGQI+EVL++   K     L G +   + V  
Sbjct: 415 VPMEVKKERLQRLNALVNEYSIEKNKRYVGQIVEVLVDGESKNNPDVLAGYTRANKLVNF 474

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
            +    I  ++KV++T+ K  +L GELV
Sbjct: 475 VAPKSAIAQLVKVKVTEAKTWSLNGELV 502


>gi|158522366|ref|YP_001530236.1| RNA modification protein [Desulfococcus oleovorans Hxd3]
 gi|229890513|sp|A8ZVH2|MIAB_DESOH RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|158511192|gb|ABW68159.1| RNA modification enzyme, MiaB family [Desulfococcus oleovorans
           Hxd3]
          Length = 466

 Score =  325 bits (832), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 176/410 (42%), Positives = 254/410 (61%), Gaps = 23/410 (5%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +RF++ + GCQMNVYDS ++  +  + G+  VN+ + ADL+ +NTC IR KA +K  SF+
Sbjct: 2   KRFYIHTIGCQMNVYDSSQLSAILTAMGHRSVNAPEQADLVFVNTCTIRAKAKQKATSFV 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER-A 143
           GR+  +K +R     D++V V GC+AQ EG ++L   P V++V G     RLP  ++  A
Sbjct: 62  GRLAAMKRARP----DMIVGVGGCLAQEEGRQLLDAFPCVDIVFGTHALGRLPGHIQAVA 117

Query: 144 RFGKRVVDTDYS--VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
             G R+VD + +  +++    L   D       GVT F+TI  GCD FCT+CVVPY RG 
Sbjct: 118 HQGDRIVDVEMTAAIDESVHALQGPD-----SSGVTGFITIMRGCDNFCTYCVVPYVRGR 172

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-GLDGEKCTFSDLLYSLSEIKGL 260
           E SR+   ++DE R  +  G+ EITLLGQNVN++  K GL    C+F+DLL  ++EI GL
Sbjct: 173 ETSRAPEHILDEIRARVAGGLREITLLGQNVNSYGQKEGL----CSFADLLARVNEIDGL 228

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+TTSHP+D+S  L  A   LD L  ++HLP QSGSD +LK MNRR+T   Y + + 
Sbjct: 229 HRIRFTTSHPKDLSPELAAAFTSLDKLCSHVHLPAQSGSDAVLKRMNRRYTRQAYLEKLH 288

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
            +R  +P +A+S+D IVGFPGET+ DF  T+DL++K+ Y   F+F YS R   P      
Sbjct: 289 WLREAQPGMALSTDIIVGFPGETEQDFLQTLDLIEKVRYDSIFAFMYSDRPLAPARAFDG 348

Query: 381 QVDENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK 427
           +VDE  K +R   LL LQ ++  ++   N A  G++ +VL+E   K  G+
Sbjct: 349 KVDEAEKQQRIYALLELQNRITAEK---NRALEGRVEQVLVEGKSKSSGR 395


>gi|229047455|ref|ZP_04193047.1| hypothetical protein bcere0027_34400 [Bacillus cereus AH676]
 gi|228723899|gb|EEL75252.1| hypothetical protein bcere0027_34400 [Bacillus cereus AH676]
          Length = 509

 Score =  325 bits (832), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 183/448 (40%), Positives = 270/448 (60%), Gaps = 15/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++F++++YGCQMN +D+  M  +F + GYE   S +DAD+++LNTC IRE A  KV+  L
Sbjct: 66  RKFYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGEL 125

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G +++LK    +   DLL+ V GC++Q E    +I++++  V++V G    +RLP +L+ 
Sbjct: 126 GHLKSLK----RRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKD 181

Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           A F K  V   +S E D  E L  V     R+  + A++ I  GCDKFCT+C+VPYTRG 
Sbjct: 182 AMFSKETVVEVWSKEGDVIENLPKV-----RRGDIKAWVNIMYGCDKFCTYCIVPYTRGK 236

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR    ++ E R L  NG  EITLLGQNVNA+ GK  +  +    DL+  L ++  + 
Sbjct: 237 ERSRRPEDIIQEIRHLAANGYKEITLLGQNVNAY-GKDFEDIEYGLGDLMDELRKVD-IA 294

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHPRD  D LI+  G    L+ ++HLPVQSGS  +LK M R+++   Y +++ +
Sbjct: 295 RIRFTTSHPRDFDDPLIEVLGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRK 354

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I+   PD  +++D IVGFP ETD+ F  TM L  ++G+  AF+F YSPR GTP + M + 
Sbjct: 355 IKEAIPDAVLTTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDN 414

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440
           V   VK ERL  L   +    +  N    GQI+EVL++   K   + L G +   + V  
Sbjct: 415 VPMEVKKERLQRLNTLVNTLAIEKNSRYKGQIVEVLVDGESKNNPEVLAGYTRTNKLVNF 474

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
            +    IG ++KV+IT+ K  +L GELV
Sbjct: 475 VASKSLIGQLVKVKITEAKTWSLNGELV 502


>gi|218898872|ref|YP_002447283.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus G9842]
 gi|228902275|ref|ZP_04066435.1| hypothetical protein bthur0014_34530 [Bacillus thuringiensis IBL
           4222]
 gi|228909596|ref|ZP_04073419.1| hypothetical protein bthur0013_37480 [Bacillus thuringiensis IBL
           200]
 gi|228966715|ref|ZP_04127759.1| hypothetical protein bthur0004_35210 [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|229890420|sp|B7ITM4|MIAB_BACC2 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|218543596|gb|ACK95990.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus G9842]
 gi|228792814|gb|EEM40372.1| hypothetical protein bthur0004_35210 [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228849885|gb|EEM94716.1| hypothetical protein bthur0013_37480 [Bacillus thuringiensis IBL
           200]
 gi|228857390|gb|EEN01890.1| hypothetical protein bthur0014_34530 [Bacillus thuringiensis IBL
           4222]
          Length = 509

 Score =  325 bits (832), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 182/448 (40%), Positives = 270/448 (60%), Gaps = 15/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++F++++YGCQMN +D+  M  +F + GYE   S +DAD+++LNTC IRE A  KV+  L
Sbjct: 66  RKFYIRTYGCQMNEHDTEVMAGIFTTLGYEPTFSTEDADVVLLNTCAIRENAENKVFGEL 125

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G +++LK    +   DLL+ V GC++Q E    +I++++  V++V G    +RLP +L+ 
Sbjct: 126 GHLKSLK----RRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKD 181

Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           A F K  V   +S E D  E L  V     R+  + A++ I  GCDKFCT+C+VPYTRG 
Sbjct: 182 AMFSKETVVEVWSKEGDVIENLPKV-----RRGDIKAWVNIMYGCDKFCTYCIVPYTRGK 236

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR    ++ E R L  NG  EITLLGQNVNA+ GK  +  +    DL+  L ++  + 
Sbjct: 237 ERSRRPEDIIQEIRHLAANGYKEITLLGQNVNAY-GKDFEDVEYGLGDLMDELRKV-DIA 294

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHPRD  D LI+  G    L+ ++HLPVQSGS  +LK M R+++   Y +++ +
Sbjct: 295 RIRFTTSHPRDFDDHLIEVLGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRK 354

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I+   PD  +++D IVGFP ETD+ F  TM L  ++G+  AF+F YSPR GTP + M + 
Sbjct: 355 IKEAIPDAVLTTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDN 414

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440
           V   VK ERL  L   +    +  N    GQI+EVL++   K   + L G +   + V  
Sbjct: 415 VPMEVKKERLQRLNTLVNTLAIEKNSRYKGQIVEVLVDGESKNNPEVLAGYTRTNKLVNF 474

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
            +    IG ++KV++T+ K  +L GELV
Sbjct: 475 VASKSLIGQLVKVKVTEAKTWSLNGELV 502


>gi|229111245|ref|ZP_04240799.1| hypothetical protein bcere0018_34910 [Bacillus cereus Rock1-15]
 gi|229129049|ref|ZP_04258022.1| hypothetical protein bcere0015_34940 [Bacillus cereus BDRD-Cer4]
 gi|229146344|ref|ZP_04274715.1| hypothetical protein bcere0012_34870 [Bacillus cereus BDRD-ST24]
 gi|296504271|ref|YP_003665971.1| tRNA 2-methylthioadenosine synthase [Bacillus thuringiensis BMB171]
 gi|228636977|gb|EEK93436.1| hypothetical protein bcere0012_34870 [Bacillus cereus BDRD-ST24]
 gi|228654286|gb|EEL10151.1| hypothetical protein bcere0015_34940 [Bacillus cereus BDRD-Cer4]
 gi|228672239|gb|EEL27529.1| hypothetical protein bcere0018_34910 [Bacillus cereus Rock1-15]
 gi|296325323|gb|ADH08251.1| tRNA 2-methylthioadenosine synthase [Bacillus thuringiensis BMB171]
          Length = 509

 Score =  325 bits (832), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 183/448 (40%), Positives = 270/448 (60%), Gaps = 15/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++F++++YGCQMN +D+  M  +F + GYE   S +DAD+++LNTC IRE A  KV+  L
Sbjct: 66  RKFYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGEL 125

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G +++LK    +   DLL+ V GC++Q E    +I++++  V++V G    +RLP +L+ 
Sbjct: 126 GHLKSLK----RRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKD 181

Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           A F K  V   +S E D  E L  V     R+  + A++ I  GCDKFCT+C+VPYTRG 
Sbjct: 182 AMFSKETVVEVWSKEGDVIENLPKV-----RRGDIKAWVNIMYGCDKFCTYCIVPYTRGK 236

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR    ++ E R L  NG  EITLLGQNVNA+ GK  +  +    DL+  L ++  + 
Sbjct: 237 ERSRRPEDIIQEIRHLAANGYKEITLLGQNVNAY-GKDFEDIEYGLGDLMDELRKVD-IA 294

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHPRD  D LI+  G    L+ ++HLPVQSGS  +LK M R+++   Y +++ +
Sbjct: 295 RIRFTTSHPRDFDDHLIEVLGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRK 354

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I+   PD  +++D IVGFP ETD+ F  TM L  ++G+  AF+F YSPR GTP + M + 
Sbjct: 355 IKEAIPDAVLTTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDN 414

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440
           V   VK ERL  L   +    +  N    GQI+EVL++   K   + L G +   + V  
Sbjct: 415 VPMEVKKERLQRLNTLVNTLAIEKNSRYKGQIVEVLVDGESKNNPEVLAGYTRTNKLVNF 474

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
            +    IG ++KV+IT+ K  +L GELV
Sbjct: 475 VASKSLIGQLVKVKITEAKTWSLNGELV 502


>gi|229151973|ref|ZP_04280169.1| hypothetical protein bcere0011_35140 [Bacillus cereus m1550]
 gi|228631528|gb|EEK88161.1| hypothetical protein bcere0011_35140 [Bacillus cereus m1550]
          Length = 509

 Score =  325 bits (832), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 183/448 (40%), Positives = 270/448 (60%), Gaps = 15/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++F++++YGCQMN +D+  M  +F + GYE   S +DAD+++LNTC IRE A  KV+  L
Sbjct: 66  RKFYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGEL 125

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G +++LK    +   DLL+ V GC++Q E    +I++++  V++V G    +RLP +L+ 
Sbjct: 126 GHLKSLK----RRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKD 181

Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           A F K  V   +S E D  E L  V     R+  + A++ I  GCDKFCT+C+VPYTRG 
Sbjct: 182 AMFSKETVVEVWSKEGDVIENLPKV-----RRGDIKAWVNIMYGCDKFCTYCIVPYTRGK 236

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR    ++ E R L  NG  EITLLGQNVNA+ GK  +  +    DL+  L ++  + 
Sbjct: 237 ERSRRPEDIIQEIRHLAANGYKEITLLGQNVNAY-GKDFEDIEYGLGDLMDELRKV-DIA 294

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHPRD  D LI+  G    L+ ++HLPVQSGS  +LK M R+++   Y +++ +
Sbjct: 295 RIRFTTSHPRDFDDHLIEVLGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRK 354

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I+   PD  +++D IVGFP ETD+ F  TM L  ++G+  AF+F YSPR GTP + M + 
Sbjct: 355 IKEAIPDAVLTTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDN 414

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440
           V   VK ERL  L   +    +  N    GQI+EVL++   K   + L G +   + V  
Sbjct: 415 VPMEVKKERLQRLNTLVNTLAIEKNSRYKGQIVEVLVDGESKNNPEVLAGYTRTNKLVNF 474

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
            +    IG ++KV+IT+ K  +L GELV
Sbjct: 475 VASKSLIGQLVKVKITEAKTWSLNGELV 502


>gi|228922487|ref|ZP_04085789.1| hypothetical protein bthur0011_34740 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228940850|ref|ZP_04103410.1| hypothetical protein bthur0008_34910 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228973771|ref|ZP_04134348.1| hypothetical protein bthur0003_35260 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228980326|ref|ZP_04140637.1| hypothetical protein bthur0002_34950 [Bacillus thuringiensis Bt407]
 gi|228779431|gb|EEM27687.1| hypothetical protein bthur0002_34950 [Bacillus thuringiensis Bt407]
 gi|228785923|gb|EEM33925.1| hypothetical protein bthur0003_35260 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228818864|gb|EEM64929.1| hypothetical protein bthur0008_34910 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228837201|gb|EEM82540.1| hypothetical protein bthur0011_34740 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|326941485|gb|AEA17381.1| tRNA 2-methylthioadenosine synthase [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 509

 Score =  324 bits (831), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 182/448 (40%), Positives = 270/448 (60%), Gaps = 15/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++F++++YGCQMN +D+  M  +F + GYE   S +DAD+++LNTC IRE A  KV+  L
Sbjct: 66  RKFYIRTYGCQMNEHDTEVMAGIFTTLGYEPTFSTEDADVVLLNTCAIRENAENKVFGEL 125

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G +++LK    +   DLL+ V GC++Q E    +I++++  V++V G    +RLP +L+ 
Sbjct: 126 GHLKSLK----RRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKD 181

Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           A F K  V   +S E D  E L  V     R+  + A++ I  GCDKFCT+C+VPYTRG 
Sbjct: 182 AMFSKETVVEVWSKEGDVIENLPKV-----RRGDIKAWVNIMYGCDKFCTYCIVPYTRGK 236

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR    ++ E R L  NG  EITLLGQNVNA+ GK  +  +    DL+  L ++  + 
Sbjct: 237 ERSRRPEDIIQEIRHLAANGYKEITLLGQNVNAY-GKDFEDIEYGLGDLMDELRKV-DIA 294

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHPRD  D LI+  G    L+ ++HLPVQSGS  +LK M R+++   Y +++ +
Sbjct: 295 RIRFTTSHPRDFDDHLIEVLGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRK 354

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I+   PD  +++D IVGFP ETD+ F  TM L  ++G+  AF+F YSPR GTP + M + 
Sbjct: 355 IKEAIPDAVLTTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDN 414

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440
           V   VK ERL  L   +    +  N    GQI+EVL++   K   + L G +   + V  
Sbjct: 415 VPMEVKKERLQRLNTLVNTLAIEKNSRYKGQIVEVLVDGESKNNPEVLAGYTRTNKLVNF 474

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
            +    IG ++KV++T+ K  +L GELV
Sbjct: 475 VASKSLIGQLVKVKVTEAKTWSLNGELV 502


>gi|326202162|ref|ZP_08192032.1| RNA modification enzyme, MiaB family [Clostridium papyrosolvens DSM
           2782]
 gi|325987957|gb|EGD48783.1| RNA modification enzyme, MiaB family [Clostridium papyrosolvens DSM
           2782]
          Length = 477

 Score =  324 bits (831), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 181/452 (40%), Positives = 278/452 (61%), Gaps = 21/452 (4%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P R+ ++++GCQMN  DS R+  M    GY   +   D+DLI+ NTC +RE A +KVY  
Sbjct: 40  PARYNIETFGCQMNENDSERLSGMLSEMGYSECSERKDSDLIIFNTCCVRENAEQKVYGH 99

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLE 141
           LG ++ LK +      +L++ + GC+ Q +   E I +    V+++ G    Y+ PELL 
Sbjct: 100 LGALKKLKET----NPNLVIAICGCMMQQKEVVEHIKKTYKHVDIIFGTHNLYKFPELLN 155

Query: 142 RARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
            A   +  V+D   S     E + I     +RK  + A++T+  GCD FC++C+VPY RG
Sbjct: 156 TAITTRSTVIDVWDSTGSIAENMPI-----SRKDNIKAWVTVMYGCDNFCSYCIVPYVRG 210

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E SRSL ++ +E  KL  +G  EITLLGQNVN++ GK L+G+  TF+ LL  L++I+G+
Sbjct: 211 RERSRSLEEIKNEVEKLAVDGCKEITLLGQNVNSY-GKDLEGD-LTFAGLLRELNKIQGI 268

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+ TSHP+D+S+ LI A  D + +  +LHLPVQSGS ++L  MNR++T  +Y ++I+
Sbjct: 269 ERIRFMTSHPKDLSEELIYAIRDCEKVCEHLHLPVQSGSSKVLDEMNRKYTKEQYLKLIE 328

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           +++S  P IA+S+D IVGFPGET++DF  T+D+V K  +  A++F YS R GTP +   E
Sbjct: 329 KVKSNIPGIALSTDIIVGFPGETEEDFDETLDVVAKARFDMAYTFLYSKRTGTPAAKNPE 388

Query: 381 QVDENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQ 436
           QV E+VK +R   LL LQ K+ ++    ND  +G+ +EVL+E   K  K    GR+   +
Sbjct: 389 QVPESVKKQRFDKLLELQNKISKE---INDEFLGKEMEVLVEGLSKSSKTTYTGRTRENK 445

Query: 437 SVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            V        +G ++KV+I +++  +L G  V
Sbjct: 446 IVNFKGNPDMVGKLVKVKIDEIQTWSLLGTKV 477


>gi|94269306|ref|ZP_01291426.1| tRNA-i(6)A37 modification enzyme MiaB [delta proteobacterium
           MLMS-1]
 gi|93451266|gb|EAT02157.1| tRNA-i(6)A37 modification enzyme MiaB [delta proteobacterium
           MLMS-1]
          Length = 446

 Score =  324 bits (831), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 184/450 (40%), Positives = 271/450 (60%), Gaps = 20/450 (4%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
            +++++GCQMN  DS  M  +     Y   +  ++AD IV+NTC IR KAA+K YS LG 
Sbjct: 5   LYIETFGCQMNERDSEIMVQLLAHDSYLETSRPEEADCIVVNTCSIRGKAAQKAYSLLGG 64

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
            ++LK    +    L++ V GCVAQ +G+ +LR+ P +++VVGPQ  YRLPEL+  AR  
Sbjct: 65  YKSLK----ERHPHLVIAVTGCVAQQDGQALLRKMPHLDLVVGPQNIYRLPELVAAARRQ 120

Query: 147 KRVVDTDYSVEDKFE---RLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
                    +   FE    L  +D      R    F+TI +GC+ FCT+CVVP+TRG EI
Sbjct: 121 AARQVAT-ELSPAFEIPPFLPAIDPAAANPR---RFVTIMQGCNNFCTYCVVPHTRGREI 176

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD---GEKCTFSDLLYSLSEIKGL 260
           SR    +V E R L  +GV E+TLLGQNVN++   GLD    EK  F  LL  + E+ G+
Sbjct: 177 SRKPEDIVAEVRHLAAHGVREVTLLGQNVNSY---GLDRPAAEKLPFPALLGKVVEVAGI 233

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+TTSHP+D+S+ L+ A   LD L P+ HLPVQSGSDR+L  MNR+++   Y + + 
Sbjct: 234 DRVRFTTSHPKDLSEELMAAFARLDKLCPHFHLPVQSGSDRVLARMNRKYSRESYLEKVA 293

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
            +R   P+IAI++D IVGFPGE++ DF  TM+L++++ Y  AFSFKYS R     +   +
Sbjct: 294 ALRQHCPEIAITTDIIVGFPGESEADFEQTMELLEQVRYDSAFSFKYSDRPNAAAARFAD 353

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440
           +V E +K+ERL  LQ +  E         VG+ +EV++E   K++G+  GR+   + V  
Sbjct: 354 KVPEELKSERLSRLQARQDEISAEIRRTLVGRTVEVMVEGRSKKQGQWSGRTRENRIVNF 413

Query: 441 NSKNHNI--GDIIKVRITDVKISTLYGELV 468
            S+ H++  G ++ V + +    +L G +V
Sbjct: 414 PSE-HDLQPGQLLPVHLKETCRHSLRGVIV 442


>gi|317050742|ref|YP_004111858.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Desulfurispirillum
           indicum S5]
 gi|316945826|gb|ADU65302.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Desulfurispirillum
           indicum S5]
          Length = 441

 Score =  324 bits (831), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 179/446 (40%), Positives = 264/446 (59%), Gaps = 11/446 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           QR F+K+YGCQMN  DS R+  +  + GYE V+ + +ADL + NTC +REKA +KV+S +
Sbjct: 3   QRAFIKTYGCQMNSGDSERIRGILVAHGYEMVSDVKEADLAIFNTCSVREKAEQKVFSDI 62

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR+R  K           + + GC+ Q + E ILR++P++++V G      L + +  A+
Sbjct: 63  GRLRGQKERH----PGFRIALCGCIPQVQREGILRKNPLIDIVFGVNNISGLMDFIAEAQ 118

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            GKR       VED+F   S  D    R+  + AF+TI  GCD +C++C+VPYTRG E S
Sbjct: 119 QGKRTC----RVEDEFFE-SEYDMPSQREDAMKAFVTIMNGCDNYCSYCIVPYTRGRERS 173

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           RS   ++ E R+L+D+GV E+TLLGQNVN++R +   G    F  LL+ + +I  L R+R
Sbjct: 174 RSAPSILAEIRQLVDDGVREVTLLGQNVNSYRWQDKAGALVDFPQLLHLVHDIPELQRIR 233

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           + TSHP+D S+ +++A   L  +  YLHLP+Q+GS+RILK MNR +T  EY   I R++ 
Sbjct: 234 FVTSHPKDFSEAMMEAMA-LPRVCKYLHLPIQAGSNRILKLMNRGYTREEYLAKIARLKE 292

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             P +A+SSDF+VGFPGET++DF  TMD+++++ Y Q F F YS R  T  + M +QV  
Sbjct: 293 RIPGVALSSDFLVGFPGETEEDFLQTMDILEQVEYKQIFGFNYSVRPETKAATMADQVPF 352

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNSK 443
            V  ERL  L    +          +G  + VL+E   K     L GR+ +   V     
Sbjct: 353 EVMNERLNRLFAAQQSISHRLQQTYLGTTLGVLVEGASKNNPAMLAGRTDFNTIVHFAGG 412

Query: 444 NHNIGDIIKVRITDVKISTLYGELVV 469
              IG ++ V I + +  TLYGE++ 
Sbjct: 413 AELIGRLVDVHINETREFTLYGEVLA 438


>gi|229018968|ref|ZP_04175810.1| hypothetical protein bcere0030_34820 [Bacillus cereus AH1273]
 gi|228742296|gb|EEL92454.1| hypothetical protein bcere0030_34820 [Bacillus cereus AH1273]
          Length = 509

 Score =  324 bits (830), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 181/448 (40%), Positives = 270/448 (60%), Gaps = 15/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++F++++YGCQMN +D+  M  +F + GYE   S +DAD+++LNTC IRE A  KV+  L
Sbjct: 66  RKFYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGEL 125

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G +++LK    +   DLL+ V GC++Q E    +I++++  V++V G    +RLP +L+ 
Sbjct: 126 GHLKSLK----RRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKD 181

Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           A F K  V   +S E D  E L  V     R+  + A++ I  GCDKFCT+C+VPYTRG 
Sbjct: 182 AMFSKETVVEVWSKEGDVIENLPKV-----RRGDIKAWVNIMYGCDKFCTYCIVPYTRGK 236

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR    ++ E R L  NG  EITLLGQNVNA+ GK  +  +    DL+  L ++  + 
Sbjct: 237 ERSRRPEDIIQEIRHLAANGYKEITLLGQNVNAY-GKDFEDFEYGLGDLMDELRKV-DIA 294

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHPRD  D LI+  G    L+ ++HLPVQSGS  +LK M R+++   Y +++ +
Sbjct: 295 RIRFTTSHPRDFDDHLIEVLGKAGNLVEHIHLPVQSGSTEMLKIMARKYSREHYLELVRK 354

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I+   P+   ++D IVGFP ETD+ F  TM L  ++G+  AF+F YSPR GTP + M + 
Sbjct: 355 IKEAIPNAVFTTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDN 414

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440
           V   VK ERL  L   +    +  N+   GQI+EVL++   K   + L G +   + V  
Sbjct: 415 VPMEVKKERLQRLNTLVNTLAIEKNNRYKGQIVEVLVDGESKNNPEVLAGYTRTNKLVNF 474

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
            +    IG ++KV++T+ K  +L GELV
Sbjct: 475 VASKSLIGQLVKVKVTEAKTWSLNGELV 502


>gi|89100706|ref|ZP_01173562.1| YmcB [Bacillus sp. NRRL B-14911]
 gi|89084581|gb|EAR63726.1| YmcB [Bacillus sp. NRRL B-14911]
          Length = 514

 Score =  324 bits (830), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 181/448 (40%), Positives = 267/448 (59%), Gaps = 15/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++F+++++GCQMN +D+  M  +F S GYE  ++++DA++I+LNTC IRE A  KV+  L
Sbjct: 69  RKFYIRTFGCQMNEHDTEVMAGIFLSLGYEPTDTVEDANVILLNTCAIRENAENKVFGEL 128

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G +++LK    KE  DLL+ V GC++Q E    +IL+    V+++ G    +RLP +L+ 
Sbjct: 129 GHLKHLK----KERPDLLLGVCGCMSQEESVVNKILKTYDQVDMIFGTHNIHRLPNILQE 184

Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           A   K +V   +S E D  E L  V     RK  + A++ I  GCDKFCT+C+VPYTRG 
Sbjct: 185 AYMSKEMVVEVWSKEGDVIENLPKV-----RKGNIKAWVNIMYGCDKFCTYCIVPYTRGK 239

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR   +++ E R+L   G  EITLLGQNVNA+ GK     +    DL+  + +I  + 
Sbjct: 240 ERSRRPEEIIQEVRQLAAQGYQEITLLGQNVNAY-GKDFTDLQYGLGDLMDEIRKI-DIP 297

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHPRD  D LI+       L+ ++HLPVQSGS  +LK M R++T  +Y +++ +
Sbjct: 298 RIRFTTSHPRDFDDHLIEVLAKGGNLLEHIHLPVQSGSTDVLKIMARKYTREQYLELVRK 357

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           IR+  P+   ++D IVG+P ETD+ F  T+ L  ++GY  A++F YSPR GTP + M + 
Sbjct: 358 IRAAIPNATFTTDIIVGYPNETDEQFEETLSLYKEVGYESAYTFIYSPREGTPAAKMKDN 417

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440
           V   VK ERL  L   + E          GQ +EVL+E   K   + L G +   + V  
Sbjct: 418 VPMEVKKERLQRLNALVNEMSAEAMKKYHGQTVEVLVEGESKNNPEVLAGYTRKNKLVNF 477

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 IG I+ V+ITD K  +L GE+V
Sbjct: 478 KGPKSAIGKIVSVKITDAKTWSLNGEMV 505


>gi|94987263|ref|YP_595196.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Lawsonia
           intracellularis PHE/MN1-00]
 gi|123385040|sp|Q1MQ52|MIAB_LAWIP RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|94731512|emb|CAJ54875.1| 2-methylthioadenine synthetase [Lawsonia intracellularis
           PHE/MN1-00]
          Length = 457

 Score =  324 bits (830), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 183/467 (39%), Positives = 278/467 (59%), Gaps = 30/467 (6%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           ++ + F + ++GCQMN  DS  +      +G++ V S++DA +I++NTC +REK  +KVY
Sbjct: 1   MLQRNFHIITFGCQMNTNDSFWLSCSLQKKGFQEV-SLEDASIIIINTCSVREKPEQKVY 59

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S LG+IR+      K   D  VV+AGCVAQ  G     + P V +V G       P+ +E
Sbjct: 60  SILGKIRH----ATKNNPDSFVVIAGCVAQQLGATFFEKFPQVRLVSGSDGIAMAPDAIE 115

Query: 142 R--ARFGKRVVDTDYSV-----EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCV 194
           R  A    ++  TD+S      E  F +L++ +   N    + A++ I +GCD +CT+C+
Sbjct: 116 RLYAEPDLKLNLTDFSEYYPEREYAFSKLTLSN---NNTLALMAYVNIMQGCDNYCTYCI 172

Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK------CTFS 248
           VPYTRG + SRS+  +V+E ++LID+GV EI LLGQNVNA+   GLD +K        F+
Sbjct: 173 VPYTRGKQKSRSVQAIVEECQQLIDSGVKEIVLLGQNVNAY---GLDKDKNSPANGVNFA 229

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
            L+++++ + GL RLR+ ++HP++ S  LI   G+   L P LHLP+QSGSD+IL+ M R
Sbjct: 230 MLVHTIASLPGLERLRFFSAHPKEFSSELIDLFGEFSTLCPRLHLPLQSGSDKILRRMGR 289

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
           +++  EY  II +++ VRPDIA+S+DFIVGFPGET++DF  T+  ++ I +  +FSF YS
Sbjct: 290 KYSMDEYISIITKLKKVRPDIALSTDFIVGFPGETEEDFLQTLQSINTIKFMSSFSFCYS 349

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK- 427
            R GT  S    +VD  VK +RL  LQ    E   S+  + VG    VL+EK  ++K + 
Sbjct: 350 DRPGTRSSTFSNKVDHEVKIKRLEQLQATQLEHSTSWLKSRVGVETTVLLEKVSRKKAED 409

Query: 428 ---LVGRSPW--LQSVVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
                GR PW  + +V+L    +    ++ VRI   K  +L  E ++
Sbjct: 410 NNSWQGRDPWGNVVNVILPQSTNISNTLLPVRIIASKKHSLVAEPLI 456


>gi|189425188|ref|YP_001952365.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Geobacter
           lovleyi SZ]
 gi|229890544|sp|B3E424|MIAB_GEOLS RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|189421447|gb|ACD95845.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Geobacter lovleyi SZ]
          Length = 438

 Score =  324 bits (830), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 179/445 (40%), Positives = 273/445 (61%), Gaps = 11/445 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ ++ + GCQMNV DS R+  M    GY + +   +A LI+ NTC +R  A E     L
Sbjct: 4   KKLYIDTVGCQMNVNDSERIVTMLQPLGYTQTSRRHEAALILFNTCTVRAGAEE---CLL 60

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             I NLKN + K+ G L + VAGCVAQ  G E+L++ P V++V G    + +PE+++ A 
Sbjct: 61  QNIANLKNLKRKKPGTL-IGVAGCVAQQMGAELLQKFPWVDLVFGTHNLHLVPEMVKDAE 119

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G+R  +TD+   D  ERL +      RKR V+AF+T+ +GCD FC++C+VPY RG EIS
Sbjct: 120 AGRRRAETDFL--DSSERLDLFPPIEGRKR-VSAFVTVMQGCDNFCSYCIVPYVRGREIS 176

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE-KCTFSDLLYSLSEIKGLVRL 263
           R  ++++ E + L   G+ E+ LLGQNVN++   GL GE + +F++L+ +++ + G+ R+
Sbjct: 177 RRFAEILQEVQDLAAQGLREVVLLGQNVNSY---GLKGEEQPSFAELVRAVAAVSGIDRV 233

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+ TSHP+DMSD LI    DL  L   LHLP Q+G++RILK+MNR ++   Y + I ++R
Sbjct: 234 RFVTSHPKDMSDDLIACFADLAKLCGSLHLPAQAGNNRILKAMNRGYSREHYLETIYKLR 293

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
             RP+I I+ D IVGFPGET+ +F  T+ L++++ Y   FSF YSPR GT  + + +++ 
Sbjct: 294 QARPEIKITGDMIVGFPGETEAEFEETLSLMEEVRYFDLFSFVYSPRPGTKAAELSDELA 353

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
           + VK  RL  LQK         N+  VG   +VL+E   K  G++ GR    + V L   
Sbjct: 354 KEVKLARLDRLQKLQAVHSRIHNETYVGSTQQVLVEGLAKRHGQVSGRCDSGRIVNLAGS 413

Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468
              IG ++ V+I +   ++L GEL+
Sbjct: 414 PALIGKLVDVKILEGYANSLLGELL 438


>gi|152976138|ref|YP_001375655.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|229890423|sp|A7GRA2|MIAB_BACCN RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|152024890|gb|ABS22660.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cytotoxicus NVH
           391-98]
          Length = 509

 Score =  323 bits (829), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 183/448 (40%), Positives = 270/448 (60%), Gaps = 15/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++F++++YGCQMN +D+  M  +F + GYE   + +DAD+I+LNTC IRE A  KV+  L
Sbjct: 66  RKFYIRTYGCQMNEHDTEVMAGIFTTLGYEPTFTTEDADVILLNTCAIRENAENKVFGEL 125

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G ++ LK    ++  DLL+ V GC++Q E    +I+++   V++V G    +RLP +L+ 
Sbjct: 126 GHLKPLK----QKNPDLLIGVCGCMSQEESVVNKIMQKHQHVDMVFGTHNIHRLPYILKD 181

Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           A F K  V   +S E D  E L  V     R+  + A++ I  GCDKFCT+C+VPYTRG 
Sbjct: 182 AMFSKATVVEVWSKEGDVIENLPKV-----RRGDIKAWVNIMYGCDKFCTYCIVPYTRGK 236

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR    ++ E R L  NG  EITLLGQNVNA+ GK  D  +    DL+  L +I  + 
Sbjct: 237 ERSRRPEDIIKEVRHLAANGYKEITLLGQNVNAY-GKDFDDLEYGLGDLMDELRKI-DIA 294

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHPRD  D LI+  G    L+ ++HLPVQSGS  +LK M R++T  +Y +++ +
Sbjct: 295 RIRFTTSHPRDFDDHLIEVLGKGGNLVEHIHLPVQSGSTDMLKIMARKYTREQYLELVRK 354

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I+   P++ +++D IVGFP ETD+ F  T+ L  ++ +  AF+F YSPR GTP + M + 
Sbjct: 355 IKKTIPNVVLTTDIIVGFPNETDEQFEETLSLYREVEFDSAFTFIYSPREGTPAAKMKDN 414

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440
           +   VK ERL  L + + E     N    GQI+EVL++   K     L G +   + V  
Sbjct: 415 IPMEVKKERLQRLNELVNEFSAKKNKKYEGQIVEVLVDGESKNNPDVLAGYTRTNKLVNF 474

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
            +    IG ++KV+IT+ K  +L GELV
Sbjct: 475 VAPKSVIGQLVKVKITEAKTWSLNGELV 502


>gi|67922391|ref|ZP_00515902.1| Protein of unknown function UPF0004:tRNA-i(6)A37 modification
           enzyme MiaB [Crocosphaera watsonii WH 8501]
 gi|67855735|gb|EAM50983.1| Protein of unknown function UPF0004:tRNA-i(6)A37 modification
           enzyme MiaB [Crocosphaera watsonii WH 8501]
          Length = 452

 Score =  323 bits (829), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 189/460 (41%), Positives = 280/460 (60%), Gaps = 29/460 (6%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
            P+R+ + ++GCQMN  DS RM  +    G++     + ADLI+ NTC IR+ A +KVYS
Sbjct: 4   TPRRYHITTFGCQMNKADSERMAGILEDMGFKWSQDPNGADLILYNTCTIRDNAEQKVYS 63

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
           +LGR    +  R  +  DL +VVAGCVAQ EGE+ILRR P +++V+GPQ   RL +LL +
Sbjct: 64  YLGR----QAKRKHKNPDLTLVVAGCVAQQEGEKILRRVPELDLVMGPQHANRLEDLLTQ 119

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRG--VTAFLTIQEGCDKFCTFCVVPYTRG 200
              G +V+ T        E + IV+     +R   VTA++ I  GC++ C++CVVP  RG
Sbjct: 120 VFDGNQVIAT--------EPIHIVEDITKPRRDSTVTAWVNIIYGCNEKCSYCVVPSVRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG------EKCTFSDLLYSL 254
           +E SR+   +  E   L   G  E+TLLGQN++A+ G+ L G       K T +DLLY +
Sbjct: 172 VEQSRTPEAIYAEMELLAKQGYKEVTLLGQNIDAY-GRDLPGVTASGRHKHTLTDLLYQV 230

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
            +I G+ RLR+ TSHPR  ++ LIKA  +L  +  + H+P QSG + +LK+M R +T  +
Sbjct: 231 HDIPGIERLRFATSHPRYFTERLIKACDELPKVCEHFHIPFQSGDNDVLKAMKRGYTHQK 290

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
           YR+IID+IR   PD +IS+D IVGFP ET++ F  T+ LVD IG+ Q  +  YSPR GTP
Sbjct: 291 YRKIIDKIREYMPDASISADAIVGFPEETEEQFENTLKLVDDIGFDQLNTAAYSPRPGTP 350

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSP 433
            +   +Q+ E VK++RL  L   + ++    +   +G+I EVL+E ++ K+  +++GR+ 
Sbjct: 351 AALWEQQLSEEVKSDRLQRLNHLVAQKAAQRSQRYLGRIEEVLVEDQNPKDNSQVMGRT- 409

Query: 434 WLQSVVLNSKNHNI----GDIIKVRITDVKISTLYGELVV 469
             Q   L     NI    G +IKV IT+V+  +L GE +V
Sbjct: 410 --QGNRLTFCKGNIDELKGQLIKVEITEVRAFSLTGEAIV 447


>gi|206977875|ref|ZP_03238763.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus H3081.97]
 gi|217961193|ref|YP_002339761.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus AH187]
 gi|222097218|ref|YP_002531275.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
           cereus Q1]
 gi|229140413|ref|ZP_04268968.1| hypothetical protein bcere0013_35120 [Bacillus cereus BDRD-ST26]
 gi|229197883|ref|ZP_04324599.1| hypothetical protein bcere0001_34190 [Bacillus cereus m1293]
 gi|229890422|sp|B7HLA6|MIAB_BACC7 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|206743875|gb|EDZ55294.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus H3081.97]
 gi|217064945|gb|ACJ79195.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus AH187]
 gi|221241276|gb|ACM13986.1| conserved hypothetical protein [Bacillus cereus Q1]
 gi|228585601|gb|EEK43703.1| hypothetical protein bcere0001_34190 [Bacillus cereus m1293]
 gi|228642974|gb|EEK99250.1| hypothetical protein bcere0013_35120 [Bacillus cereus BDRD-ST26]
 gi|324327666|gb|ADY22926.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
           thuringiensis serovar finitimus YBT-020]
          Length = 509

 Score =  323 bits (829), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 181/448 (40%), Positives = 271/448 (60%), Gaps = 15/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++F++++YGCQMN +D+  M  +F + GYE   S ++AD+++LNTC IRE A  KV+  L
Sbjct: 66  RKFYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEEADVVLLNTCAIRENAENKVFGEL 125

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G ++ LK    +   DLL+ V GC++Q E    +I++++  V++V G    +RLP +L+ 
Sbjct: 126 GHLKALK----RRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKD 181

Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           A F K  V   +S E D  E L  V     R+  + A++ I  GCDKFCT+C+VPYTRG 
Sbjct: 182 AMFSKETVVEVWSKEGDVIENLPKV-----RRGDIKAWVNIMYGCDKFCTYCIVPYTRGK 236

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR    ++ E R L  NG  EITLLGQNVNA+ GK  +  +    DL+  L ++  + 
Sbjct: 237 ERSRRPEDIIQEIRHLAANGYKEITLLGQNVNAY-GKDFEDIEYGLGDLMDELRKV-DIA 294

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHPRD  D LI+  G    L+ ++HLPVQSGS  +LK M R+++   Y +++ +
Sbjct: 295 RIRFTTSHPRDFDDHLIEVLGKGGNLVEHIHLPVQSGSTEMLKIMARKYSREHYLELVRK 354

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I+   P+  +++D IVGFP ETD+ F  TM L  ++G+  AF+F YSPR GTP + M + 
Sbjct: 355 IKEAIPNAVLTTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDN 414

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440
           V   VK ERL  L   + +  +  N+   GQI+EVL++   K   + L G +   + V  
Sbjct: 415 VPMEVKKERLQRLNALVNKLAIEKNNRYKGQIVEVLVDGESKNNPEVLAGYTRTNKLVNF 474

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
            +    IG ++KV++TD K  +L GELV
Sbjct: 475 VAPKSLIGQLVKVKVTDAKTWSLNGELV 502


>gi|42782856|ref|NP_980103.1| hypothetical protein BCE_3806 [Bacillus cereus ATCC 10987]
 gi|81409496|sp|Q732V4|MIAB_BACC1 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|42738783|gb|AAS42711.1| conserved hypothetical protein [Bacillus cereus ATCC 10987]
          Length = 509

 Score =  323 bits (829), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 181/448 (40%), Positives = 271/448 (60%), Gaps = 15/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++F++++YGCQMN +D+  M  +F + GYE   S ++AD+++LNTC IRE A  KV+  L
Sbjct: 66  RKFYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEEADVVLLNTCAIRENAENKVFGEL 125

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G ++ LK    +   DLL+ V GC++Q E    +I++++  V++V G    +RLP +L+ 
Sbjct: 126 GHLKALK----RRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKD 181

Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           A F K  V   +S E D  E L  V     R+  + A++ I  GCDKFCT+C+VPYTRG 
Sbjct: 182 AMFSKETVVEVWSKEGDVIENLPKV-----RRGDIKAWVNIMYGCDKFCTYCIVPYTRGK 236

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR    ++ E R L  NG  EITLLGQNVNA+ GK  +  +    DL+  L ++  + 
Sbjct: 237 ERSRRPEDIIQEIRHLAANGYKEITLLGQNVNAY-GKDFEDIEYGLGDLMDELRKV-DIA 294

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHPRD  D LI+  G    L+ ++HLPVQSGS  +LK M R+++   Y +++ +
Sbjct: 295 RIRFTTSHPRDFDDHLIEVLGKGGNLVEHIHLPVQSGSTEMLKIMARKYSREHYLELVRK 354

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I+   P+  +++D IVGFP ETD+ F  TM L  ++G+  AF+F YSPR GTP + M + 
Sbjct: 355 IKEAIPNAVLTTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDN 414

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440
           V   VK ERL  L   + +  +  N+   GQI+EVL++   K   + L G +   + V  
Sbjct: 415 VPMEVKKERLQRLNALVNKLAIEKNNRYKGQIVEVLVDGESKNNPEVLAGYTRTNKLVNF 474

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
            +    IG ++KV++TD K  +L GELV
Sbjct: 475 VAPKSLIGQLVKVKVTDAKTWSLNGELV 502


>gi|229061375|ref|ZP_04198721.1| hypothetical protein bcere0026_34620 [Bacillus cereus AH603]
 gi|228717914|gb|EEL69560.1| hypothetical protein bcere0026_34620 [Bacillus cereus AH603]
          Length = 509

 Score =  323 bits (829), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 183/448 (40%), Positives = 271/448 (60%), Gaps = 15/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++F++++YGCQMN +D+  M  +F + GYE   S ++AD+I+LNTC IRE A  KV+  L
Sbjct: 66  RKFYIRTYGCQMNEHDTEVMAGIFTTLGYEPTFSTEEADVILLNTCAIRENAENKVFGEL 125

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G +++LK    +    L++ V GC++Q E    +I++++  V++V G    +RLP +L+ 
Sbjct: 126 GHLKSLK----RRNPALIIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKD 181

Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           A F K  V   +S E D  E L  V     R+  + A++ I  GCDKFCT+C+VPYTRG 
Sbjct: 182 AMFSKETVVEVWSKEGDVIENLPKV-----RRGDIKAWVNIMYGCDKFCTYCIVPYTRGK 236

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR    ++ E R L  NG  EITLLGQNVNA+ GK  +  +    DL+  L +I  + 
Sbjct: 237 ERSRRPEDIIKEIRHLAANGYKEITLLGQNVNAY-GKDFEDIQYGLGDLMDELRKI-DIA 294

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHPRD  + LI   G    L+ ++HLPVQSGS  +LK M R+++   Y +++ +
Sbjct: 295 RIRFTTSHPRDFDNHLIDVLGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRK 354

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I+   P+  +++D IVGFP ETD+ F  TM L  ++G+  AF+F YSPR GTP + M + 
Sbjct: 355 IKETIPNAVLTTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMQDN 414

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440
           V   VK ERL  L   + E  V+ N   +GQI+EVL+E   K   + L G +   + V  
Sbjct: 415 VPMEVKKERLQRLNTLVNEYAVNKNKRYIGQIVEVLVEGESKNNPEVLAGYTRTNKLVNF 474

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
            +    IG ++KV+IT+ K  +L GELV
Sbjct: 475 VASKSLIGQLVKVKITEAKTWSLNGELV 502


>gi|94264310|ref|ZP_01288103.1| tRNA-i(6)A37 modification enzyme MiaB [delta proteobacterium
           MLMS-1]
 gi|93455276|gb|EAT05486.1| tRNA-i(6)A37 modification enzyme MiaB [delta proteobacterium
           MLMS-1]
          Length = 446

 Score =  323 bits (828), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 185/451 (41%), Positives = 272/451 (60%), Gaps = 22/451 (4%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
            +++++GCQMN  DS  M  +     Y   +  ++AD IV+NTC IR KAA+K YS LG 
Sbjct: 5   LYIETFGCQMNERDSEIMVQLLAHDSYLETSRPEEADCIVVNTCSIRGKAAQKAYSLLGG 64

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
            ++LK    +    L++ V GCVAQ +G+ +LR+ P +++VVGPQ  YRLPEL+  AR  
Sbjct: 65  YKSLK----ERHPHLVIAVTGCVAQQDGQALLRKMPHLDLVVGPQNIYRLPELVAAARQQ 120

Query: 147 KRVVDTDYSVEDKFE---RLSIVD-GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
                    +   FE    L  +D    N +R    F+TI +GC+ FCT+CVVP+TRG E
Sbjct: 121 AARQVAT-ELSPAFEIPPFLPAIDPAAVNPRR----FVTIMQGCNNFCTYCVVPHTRGRE 175

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD---GEKCTFSDLLYSLSEIKG 259
           ISR    +V E R L  +GV E+TLLGQNVN++   GLD    EK  F  LL  + E+ G
Sbjct: 176 ISRKPEDIVAEVRHLAAHGVREVTLLGQNVNSY---GLDRPAAEKLPFPALLGKVVEVAG 232

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           + R+R+TTSHP+D+S+ L+ A   LD L P+ HLPVQSGSDR+L  MNR+++   Y   +
Sbjct: 233 IDRVRFTTSHPKDLSEELMAAFARLDKLCPHFHLPVQSGSDRVLARMNRKYSRESYLAKV 292

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
             +R   P+IAI++D IVGFPGE++ DF  TM+L++++ Y  AFSFKYS R     +   
Sbjct: 293 AALRQHCPEIAITTDIIVGFPGESEADFEQTMELLEQVRYDSAFSFKYSDRPNAAAARFA 352

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV 439
           ++V E +K+ERL  LQ +  E         VG+ +EV++E   K++G+  GR+   + V 
Sbjct: 353 DKVPEELKSERLSRLQARQDEISAEIRRTLVGRTVEVMVEGRSKKQGQWSGRTRENRIVN 412

Query: 440 LNSKNHNI--GDIIKVRITDVKISTLYGELV 468
             S+ H++  G ++ V + +    +L G +V
Sbjct: 413 FPSE-HDLQPGQLLPVHLKETCRHSLRGVIV 442


>gi|30021864|ref|NP_833495.1| tRNA 2-methylthioadenosine synthase [Bacillus cereus ATCC 14579]
 gi|81432671|sp|Q812Y0|MIAB_BACCR RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|29897420|gb|AAP10696.1| tRNA 2-methylthioadenosine synthase [Bacillus cereus ATCC 14579]
          Length = 509

 Score =  323 bits (828), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 182/448 (40%), Positives = 269/448 (60%), Gaps = 15/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++F++++YGCQMN +D+  M  +F + GYE   S +DAD+++LNTC IRE A  KV+  L
Sbjct: 66  RKFYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGEL 125

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G +++LK    +   D L+ V GC++Q E    +I++++  V++V G    +RLP +L+ 
Sbjct: 126 GHLKSLK----RRNPDFLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKD 181

Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           A F K  V   +S E D  E L  V     R+  + A++ I  GCDKFCT+C+VPYTRG 
Sbjct: 182 AMFSKETVVEVWSKEGDVIENLPKV-----RRGDIKAWVNIMYGCDKFCTYCIVPYTRGK 236

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR    ++ E R L  NG  EITLLGQNVNA+ GK  +  +    DL+  L ++  + 
Sbjct: 237 ERSRRPEDIIQEIRHLAANGYKEITLLGQNVNAY-GKDFEDIEYGLGDLMDELRKVD-IA 294

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHPRD  D LI+  G    L+ ++HLPVQSGS  +LK M R+++   Y +++ +
Sbjct: 295 RIRFTTSHPRDFDDHLIEVLGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRK 354

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I+   PD  +++D IVGFP ETD+ F  TM L  ++G+  AF+F YSPR GTP + M + 
Sbjct: 355 IKEAIPDAVLTTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDN 414

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440
           V   VK ERL  L   +    +  N    GQI+EVL++   K   + L G +   + V  
Sbjct: 415 VPMEVKKERLQRLNTLVNTLAIEKNSRYKGQIVEVLVDGESKNNPEVLAGYTRTNKLVNF 474

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
            +    IG ++KV+IT+ K  +L GELV
Sbjct: 475 VASKSLIGQLVKVKITEAKTWSLNGELV 502


>gi|313888326|ref|ZP_07821997.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Peptoniphilus harei
           ACS-146-V-Sch2b]
 gi|312845729|gb|EFR33119.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Peptoniphilus harei
           ACS-146-V-Sch2b]
          Length = 466

 Score =  323 bits (827), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 179/458 (39%), Positives = 284/458 (62%), Gaps = 21/458 (4%)

Query: 18  VDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA 77
           + + +  +R  V ++GCQMN +DS ++  +    GY  VN +D+AD I+LNTC +R  A 
Sbjct: 21  IKESVDEKRALVITHGCQMNEHDSEKITWLLEKMGYSFVNEIDEADFIILNTCSVRHSAE 80

Query: 78  EKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEE--ILRRSPIVNVVVGPQTYYR 135
           +KVY  LG ++NLK+ +      + + V GC+ Q +     ++ + P V+++ G    ++
Sbjct: 81  DKVYGQLGNLKNLKSKKKN----IKIAVCGCMMQRDESRNYVIEKFPNVDIIFGTNNIWK 136

Query: 136 LPELLERARFGKRVV----DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCT 191
           LPELL  +  G ++     +   S++DK         G NR     +++ I  GC+ FC+
Sbjct: 137 LPELLTASYNGTKLAMDIEENALSIDDKL--------GANRLYNFKSYVNIMYGCNNFCS 188

Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLL 251
           +C+VPYTRG E SR   +++ E   L  +G  E+TLLGQNVN++ GK LD EK +F++LL
Sbjct: 189 YCIVPYTRGRETSRRPGEIIREIEDLARHGTKEVTLLGQNVNSY-GKTLD-EKFSFANLL 246

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
             +++IKG+ R+R+ TSHP+D+SD LI +  +LD L  +LHLPVQ+GS R+LK MNR++T
Sbjct: 247 EEINDIKGIERIRFMTSHPKDISDELIYSFKNLDKLCNFLHLPVQAGSSRVLKMMNRKYT 306

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
             +Y + ID+++S+ P+IA+S+D +VGFPGE+++DF  T+DLV K+ Y  AF+F YS R 
Sbjct: 307 REDYLRKIDKVKSLNPNIALSTDIMVGFPGESEEDFLDTLDLVKKVEYDTAFTFIYSVRE 366

Query: 372 GTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVG 430
            TP +N  +QV + VK +R   L   L   Q   N A +G+ ++VL+E    K + K+ G
Sbjct: 367 NTPAANRTDQVPDKVKHDRFERLLDVLYPIQERKNKAFIGKDVDVLVEDISKKNESKVSG 426

Query: 431 RSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           R+   + V      +++G+I+KVRI D    +L GE +
Sbjct: 427 RTDEFKLVNFKGDKNDVGNIVKVRIKDANSFSLVGEKI 464


>gi|125973301|ref|YP_001037211.1| RNA modification protein [Clostridium thermocellum ATCC 27405]
 gi|256003782|ref|ZP_05428770.1| RNA modification enzyme, MiaB family [Clostridium thermocellum DSM
           2360]
 gi|281417504|ref|ZP_06248524.1| RNA modification enzyme, MiaB family [Clostridium thermocellum
           JW20]
 gi|229890498|sp|A3DDI9|MIAB_CLOTH RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|125713526|gb|ABN52018.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Clostridium thermocellum
           ATCC 27405]
 gi|255992343|gb|EEU02437.1| RNA modification enzyme, MiaB family [Clostridium thermocellum DSM
           2360]
 gi|281408906|gb|EFB39164.1| RNA modification enzyme, MiaB family [Clostridium thermocellum
           JW20]
 gi|316940466|gb|ADU74500.1| RNA modification enzyme, MiaB family [Clostridium thermocellum DSM
           1313]
          Length = 480

 Score =  323 bits (827), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 177/451 (39%), Positives = 275/451 (60%), Gaps = 25/451 (5%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           + + ++GCQMN +DS ++  M    GY   ++++++DL++ NTC +RE A  KVY  LG 
Sbjct: 45  YCLNTFGCQMNEHDSEKLAGMLAEMGYAETDNVNESDLVIYNTCCVRENAELKVYGHLGM 104

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           ++ LKN +     DL++ V GC+ Q     E I +    V+++ G    Y+ PELL  A 
Sbjct: 105 LKPLKNQK----PDLVIAVCGCMMQQPEVVEHIKKTYSHVDLIFGTHNLYKFPELLYSA- 159

Query: 145 FGKRVVDTDYSVEDKFERLSIVDG------GYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
                +D+  +V D ++     DG         RK GV A++T+  GC+ FCT+C+VPY 
Sbjct: 160 -----MDSQTTVVDVWD----CDGQIAENVAIERKDGVKAWVTVMYGCNNFCTYCIVPYV 210

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258
           RG E SRS+  +++E R L   G  EITLLGQNVN++ GK + G+  +F++L+  +++I 
Sbjct: 211 RGRERSRSMDDILEEVRMLGRQGFKEITLLGQNVNSY-GKDI-GDGTSFAELIREVNKIP 268

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           G+ R+R+TTSHP+D+SD LI A  D + +  +LHLP Q+GS RILK MNR++T  +Y  +
Sbjct: 269 GIERIRFTTSHPKDLSDDLIYAMRDCEKVCEHLHLPFQAGSTRILKLMNRKYTKEDYINL 328

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           + +I+   PDIA+++D IVGFPGET++DF  T+D+++K+ +  A++F YS R GTP + M
Sbjct: 329 VAKIKENIPDIALTTDIIVGFPGETEEDFSDTLDILEKVRFDNAYTFLYSKRTGTPAAKM 388

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL-VGRSPWLQS 437
            +QV E VK ER   L +         ND  +G+++EVL+E   K   K+  GR+   + 
Sbjct: 389 EDQVPEEVKKERFQRLLETQNRISKEINDTFLGKVVEVLVEGVSKTNDKIFTGRTRGNKV 448

Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           V   +    IG ++ VRI  VK  +L G +V
Sbjct: 449 VNFEADASLIGKLVNVRINTVKTWSLEGSIV 479


>gi|229174437|ref|ZP_04301969.1| hypothetical protein bcere0006_35300 [Bacillus cereus MM3]
 gi|228608997|gb|EEK66287.1| hypothetical protein bcere0006_35300 [Bacillus cereus MM3]
          Length = 509

 Score =  322 bits (826), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 181/448 (40%), Positives = 270/448 (60%), Gaps = 15/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++F++++YGCQMN +D+  M  +F + GYE   S +DAD+++LNTC IRE A  KV+  L
Sbjct: 66  RKFYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGEL 125

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G +++LK    +   DLL+ V GC++Q E    +I++++  V++V G    +RLP +L+ 
Sbjct: 126 GHLKSLK----RRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKD 181

Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           A F K  V   +S E D  E L  V     R+  + A++ I  GCDKFCT+C+VPYTRG 
Sbjct: 182 AMFSKETVVEVWSKEGDVIENLPKV-----RRGDIKAWVNIMYGCDKFCTYCIVPYTRGK 236

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR    ++ E R L  NG  EITLLGQNVNA+ GK  +  +    DL+  L ++  + 
Sbjct: 237 ERSRRPEDIIQEIRHLAANGYKEITLLGQNVNAY-GKDFEDFEYGLGDLMDELRKVD-IA 294

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHPRD  D LI+  G    L+ ++HLPVQSGS  +LK M R+++   Y +++ +
Sbjct: 295 RIRFTTSHPRDFDDHLIEVLGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRK 354

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I+   P+   ++D IVGFP ETD+ F  TM L  ++G+  AF+F YSPR GTP + M + 
Sbjct: 355 IKEAIPNAVFTTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDN 414

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440
           V   VK ERL  L   +    +  N+   GQI+EVL++   K   + L G +   + V  
Sbjct: 415 VPMEVKKERLQRLNTLVNTLAIEKNNRYKGQIVEVLVDGESKNNPEVLAGYTRTNKLVNF 474

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
            +    IG ++KV++T+ K  +L GELV
Sbjct: 475 VASKSLIGQLVKVKVTEAKTWSLNGELV 502


>gi|229098241|ref|ZP_04229188.1| hypothetical protein bcere0020_34750 [Bacillus cereus Rock3-29]
 gi|229104336|ref|ZP_04235005.1| hypothetical protein bcere0019_34840 [Bacillus cereus Rock3-28]
 gi|229117258|ref|ZP_04246636.1| hypothetical protein bcere0017_35380 [Bacillus cereus Rock1-3]
 gi|228666158|gb|EEL21622.1| hypothetical protein bcere0017_35380 [Bacillus cereus Rock1-3]
 gi|228679034|gb|EEL33242.1| hypothetical protein bcere0019_34840 [Bacillus cereus Rock3-28]
 gi|228685139|gb|EEL39070.1| hypothetical protein bcere0020_34750 [Bacillus cereus Rock3-29]
          Length = 509

 Score =  322 bits (826), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 182/448 (40%), Positives = 270/448 (60%), Gaps = 15/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++F++++YGCQMN +D+  M  +F + GYE   S +DAD+++LNTC IRE A  KV+  L
Sbjct: 66  RKFYIRTYGCQMNEHDTEVMAGIFTTLGYEPTFSTEDADVVLLNTCAIRENAENKVFGEL 125

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G +++LK    +   DLL+ V GC++Q E    +I++++  V++V G    +RLP +L+ 
Sbjct: 126 GHLKSLK----RRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKD 181

Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           A F K  V   +S E D  E L  V     R+  + A++ I  GCDKFCT+C+VPYTRG 
Sbjct: 182 AMFSKETVVEVWSKEGDVIENLPKV-----RRGDIKAWVNIMYGCDKFCTYCIVPYTRGK 236

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR    ++ E R L  NG  EITLLGQNVNA+ GK  +  +    DL+  L ++  + 
Sbjct: 237 ERSRRPEDIIQEIRHLAANGYKEITLLGQNVNAY-GKDFEDLEYGLGDLMDELRKVD-IA 294

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHPRD  D LI+  G    L+ ++HLPVQSGS  +LK M R+++   Y +++ +
Sbjct: 295 RIRFTTSHPRDFDDHLIEVLGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRK 354

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I+   P   +++D IVGFP ETD+ F  TM L  ++G+  AF+F YSPR GTP + M + 
Sbjct: 355 IKETIPSAVLTTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDN 414

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440
           V   VK ERL  L   +    V  N+   GQ++EVL++   K   + L G +   + V  
Sbjct: 415 VPMEVKKERLQRLNTLVNGLAVEKNNRYKGQVVEVLVDGESKNNPEVLAGYTRTNKLVNF 474

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
            +    IG ++KV+IT+ K  +L GELV
Sbjct: 475 VASKSLIGQLVKVKITEAKTWSLNGELV 502


>gi|301064673|ref|ZP_07205062.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [delta proteobacterium
           NaphS2]
 gi|300441215|gb|EFK05591.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [delta proteobacterium
           NaphS2]
          Length = 439

 Score =  322 bits (825), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 176/450 (39%), Positives = 274/450 (60%), Gaps = 18/450 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +RF +++ GCQMN YDS  +       G+     +  AD+I++NTC +R K  +K  SFL
Sbjct: 3   KRFHIQTMGCQMNEYDSDFLAQSLIKNGFLPEEQVHRADIILINTCAVRAKPEQKACSFL 62

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE--- 141
           GR+ +LK    ++  +L+V + GC+AQ +G+E++RR P+++ V+GP+   R+ E +E   
Sbjct: 63  GRMADLK----EKNPELIVGMIGCLAQMKGKELIRRFPLLDFVMGPRELERIVECIEGIY 118

Query: 142 --RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
             R RF    ++       K         GY + R  + F++I EGC+ FC++C+VPY R
Sbjct: 119 KKRQRFVATALNGVPPSPVKCT-------GYFQNR-TSGFISIMEGCNNFCSYCIVPYVR 170

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G E  R+   +++EA  LI  G+ EITLLGQNVN++  K  +     FS LLY L+E+  
Sbjct: 171 GREFFRAPEDILEEAEYLISEGIREITLLGQNVNSYVWKK-NHNNWNFSSLLYELAELDH 229

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           L+RLR+TTSHP+D SD L+     ++ L  ++HLP Q+GS+RILKSM R +T  +Y  II
Sbjct: 230 LLRLRFTTSHPKDFSDELLACFAHIEKLAGHIHLPFQAGSNRILKSMRRGYTREQYLAII 289

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            +I++ + DIAI+SD +VGFPGET++DF+ T+DL++++ +   FSFKYS R GTP + M 
Sbjct: 290 RKIKTCKEDIAITSDVMVGFPGETEEDFQFTLDLIEQVQFDSLFSFKYSDREGTPAAEMS 349

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV 439
           E+++E VK  RL  LQ       +  N   VG+ + VL+E   K+  +L GR+P  + V 
Sbjct: 350 EKINEKVKIARLQRLQDIQNGITLKKNQQLVGRQVTVLVEGASKKGEQLTGRTPSNKVVN 409

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELVV 469
            +      G +++V I    +++L GE + 
Sbjct: 410 FDGDVALAGRLVEVVIKASYVNSLKGETIT 439


>gi|302389750|ref|YP_003825571.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Thermosediminibacter
           oceani DSM 16646]
 gi|302200378|gb|ADL07948.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Thermosediminibacter
           oceani DSM 16646]
          Length = 439

 Score =  322 bits (825), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 179/446 (40%), Positives = 268/446 (60%), Gaps = 13/446 (2%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           ++ + ++GCQMN++D+  +  +    GY    ++ +ADLI+LNTC +RE A  KVY  +G
Sbjct: 3   KYHILTWGCQMNLHDTEVISGVLQKMGYCPAGNLKEADLIILNTCCVRENAERKVYGRIG 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +++  K    +   +L++ + GC+ Q     E I    P V+++ G    ++LP+L+E A
Sbjct: 63  QLKQFK----QRNPNLVLGICGCMIQQPHVVEYITEHFPYVDLIFGIHNVHKLPQLIENA 118

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           R     V        + E     D    R+  + A++TI  GC+ FCT+C+VPY RG E 
Sbjct: 119 RLANMTVIETGGESSQIEE----DLPVEREDKIKAWVTITYGCNNFCTYCIVPYVRGREK 174

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR+   +V E  +L   G  EI LLGQNVN++ GK L G   TF +LL  L++I G+ R+
Sbjct: 175 SRNPEDIVREVEELAKQGFKEINLLGQNVNSY-GKDLGG-AVTFPELLRRLNDIDGIERI 232

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+TTSHP+D+SD LI A  D   +  ++HLPVQ+GS+RIL++MNRR+T   Y +++ ++R
Sbjct: 233 RFTTSHPKDLSDELIYAMRDCKKVCEHIHLPVQAGSNRILEAMNRRYTREHYMELVKKLR 292

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
               DIAIS+D IVGFPGET++DF+ T+DLV ++ Y QAF F YS R GTP + M  QVD
Sbjct: 293 DAISDIAISTDIIVGFPGETEEDFQDTLDLVRRVEYDQAFMFVYSKRKGTPAAEMENQVD 352

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLVGRSPWLQSVVLNS 442
           E+VK ERL  L +         N A  GQ++EVL+E   +    KL GR+   + V    
Sbjct: 353 EDVKKERLDRLMRLQDSISAKKNKALKGQVVEVLVEGPSRNNPEKLTGRTRTNKVVNFEG 412

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
               IG +++VRIT+    +L GE++
Sbjct: 413 PADLIGKLVEVRITEPHTWSLIGEVL 438


>gi|253699420|ref|YP_003020609.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Geobacter sp.
           M21]
 gi|251774270|gb|ACT16851.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Geobacter sp. M21]
          Length = 441

 Score =  322 bits (825), Expect = 8e-86,   Method: Compositional matrix adjust.
 Identities = 175/448 (39%), Positives = 268/448 (59%), Gaps = 17/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ +++++GCQMNV DS ++  +    GY++     DADL++LNTC IR  A ++VY  L
Sbjct: 5   KKLYLETFGCQMNVSDSEKIVTLMKGMGYQQTQDPVDADLVLLNTCSIRATAEQRVYGHL 64

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           G+ +++K  +      L++ V GCVAQ EGE++L+++P VN+V G    + L  ++  A 
Sbjct: 65  GKFKSIKKGKP----GLIIGVGGCVAQQEGEKLLKKAPFVNLVFGTHNLHLLQGMVAAAE 120

Query: 145 FGKRVVDTDY-SVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            GKR   TD+   E +F+     +     + GVT F+T+ +GCD FC +C+VP+ RG EI
Sbjct: 121 QGKRSSQTDFLDDEKRFDLFPHAEA----EGGVTRFVTVMQGCDNFCAYCIVPHVRGREI 176

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SRS  +VV+E R L   GV E+TLLGQNVN++  K   GE   F DLL  ++++ G+ R+
Sbjct: 177 SRSAVKVVEEVRALAGGGVTEVTLLGQNVNSYCSK-QPGEP-DFPDLLRLVAQVDGIERI 234

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+TTSHP+DMS  LI+   DL  L P++HLP QSGSDR+L+ MNR +TA +Y   +  ++
Sbjct: 235 RFTTSHPKDMSPRLIECFADLPKLAPHIHLPAQSGSDRVLERMNRGYTAQQYLAKVAALK 294

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              P I  + D IVGFPGE +  F+ TM L++++ YA  FSF YS R   PG+   E  D
Sbjct: 295 EACPAIQFTGDMIVGFPGEDEAAFQETMALMEEVRYADLFSFIYSAR---PGTKAAEYAD 351

Query: 384 ENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440
           +  +AE   RL  LQ   ++  ++ N +  G + +VL+E        L GR+   +  V+
Sbjct: 352 DATRAEKQGRLERLQAAQKKTTLARNRSLEGTVQKVLVEGLSSTGDSLFGRTGGNRGTVM 411

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                  G ++ V+I +   + L GE+V
Sbjct: 412 AGDPSLAGRVLDVKIVEGLQTLLKGEIV 439


>gi|150017413|ref|YP_001309667.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Clostridium beijerinckii
           NCIMB 8052]
 gi|229890483|sp|A6LWI1|MIAB_CLOB8 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|149903878|gb|ABR34711.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Clostridium beijerinckii
           NCIMB 8052]
          Length = 455

 Score =  322 bits (824), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 177/449 (39%), Positives = 267/449 (59%), Gaps = 23/449 (5%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           FF+++YGCQMN  DS ++  M    GYE   + D+A +I+ NTC +RE A  KV+  LG 
Sbjct: 20  FFIQTYGCQMNEEDSEKLSGMLKRMGYENTENRDEASIIIFNTCCVRENAENKVFGNLGA 79

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           ++  K    ++  DL++ + GC+ Q +G  ++IL+R P VN++ G    Y+ PE L R +
Sbjct: 80  LKKQK----EKNPDLVIGICGCMMQQKGMADDILKRFPYVNIIFGTHNSYKFPEYLNRVK 135

Query: 145 FG----KRVVDTDYSVEDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
                 K ++D +           IV+G   +RK  +  F+TI  GC+ FCT+C+VPY R
Sbjct: 136 TEGVQIKEIIDKE---------TEIVEGIPIDRKSDIKGFVTIMYGCNNFCTYCIVPYVR 186

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G E SR    +V+E + ++  G  E+TLLGQNVN++ GKGL+ E  TF+DLL  ++EI+G
Sbjct: 187 GRERSRKPEDIVNEIKDMVTRGYKEVTLLGQNVNSY-GKGLE-ENITFADLLRKVNEIEG 244

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           L R+R+ TSHP+D++  ++ A  D D +   +HLPVQSGSDRILK MNR +T  +Y  + 
Sbjct: 245 LERIRFMTSHPKDLTLDVVYAIRDCDKVCEQIHLPVQSGSDRILKEMNRHYTKEQYITLA 304

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            +IR+  PD+  S+D IVGFPGET++DF  T++L  ++ Y  AF+F YS R  TP   M 
Sbjct: 305 KKIRAEIPDVTFSTDIIVGFPGETEEDFSETLELAKEVRYDAAFTFIYSRRNHTPADKME 364

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSV 438
            Q+ + +K ER   L + +       N    G+I EVL+E + K ++ KL GR+   + V
Sbjct: 365 NQIPDEIKHERFNRLVEIVNTGIAKGNKDAEGKIYEVLVEGYSKNDEAKLTGRTRNGRLV 424

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGEL 467
                   IG ++ V+I      +L GE+
Sbjct: 425 NFEGGEDLIGKLVNVKIIKANSFSLIGEV 453


>gi|229031402|ref|ZP_04187403.1| hypothetical protein bcere0028_34560 [Bacillus cereus AH1271]
 gi|228729897|gb|EEL80876.1| hypothetical protein bcere0028_34560 [Bacillus cereus AH1271]
          Length = 509

 Score =  322 bits (824), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 180/448 (40%), Positives = 270/448 (60%), Gaps = 15/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++F++++YGCQMN +D+  M  +F + GYE   S +DAD+++LNTC IRE A  KV+  L
Sbjct: 66  RKFYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGEL 125

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G +++LK    +   DLL+ V GC++Q E    +I++++  V++V G    +RLP +L+ 
Sbjct: 126 GHLKSLK----RRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKD 181

Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           A F K  V   +S E D  E L  V     R+  + A++ I  GCDKFCT+C+VPYTRG 
Sbjct: 182 AMFSKETVVEVWSKEGDVIENLPKV-----RRGDIKAWVNIMYGCDKFCTYCIVPYTRGK 236

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR    ++ E R L  NG  EITLLGQNVNA+ GK  +  +    DL+  L ++  + 
Sbjct: 237 ERSRRPEDIIQEIRHLAANGYKEITLLGQNVNAY-GKDFEDFEYGLGDLMDELRKVD-IA 294

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHPRD  D LI+  G    L+ ++HLPVQSGS  +LK M R+++   Y +++ +
Sbjct: 295 RIRFTTSHPRDFDDHLIEVLGKGGNLVEHIHLPVQSGSTEMLKIMARKYSREHYLELVRK 354

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I+   P+   ++D IVGFP ET++ F  TM L  ++G+  AF+F YSPR GTP + M + 
Sbjct: 355 IKEAIPNAVFTTDIIVGFPNETNEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDN 414

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440
           V   VK ERL  L   +    +  N+   GQI+EVL++   K   + L G +   + V  
Sbjct: 415 VPMEVKKERLQRLNTLVNTLAIEKNNRYKGQIVEVLVDGESKNNPEVLAGYTRTNKLVNF 474

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
            +    IG ++KV++T+ K  +L GELV
Sbjct: 475 VASKSLIGQLVKVKVTEAKTWSLNGELV 502


>gi|310658531|ref|YP_003936252.1| isopentenyl-adenosine a37 tRNA methylthiolase [Clostridium
           sticklandii DSM 519]
 gi|308825309|emb|CBH21347.1| isopentenyl-adenosine A37 tRNA methylthiolase [Clostridium
           sticklandii]
          Length = 477

 Score =  321 bits (823), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 178/447 (39%), Positives = 280/447 (62%), Gaps = 18/447 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           Q +F++++GCQMN +DS  +  MF     +  +SM++AD+I+ NTC +RE A  KVY   
Sbjct: 39  QSYFIQTFGCQMNEHDSENLAGMFDMMNIDLADSMEEADIIIFNTCAVRENAELKVY--- 95

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G +  LK  ++K   DL++ V GC+ Q +   +EI +R P V++V G    Y+ PELL +
Sbjct: 96  GNLHALKKLKVK-NPDLIIAVCGCMMQQDHVVDEIKKRFPHVSLVFGTHNLYKFPELLLK 154

Query: 143 ARFG--KRVVDTDYSVEDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
              G  K ++D  + ++      ++++G    R+  + AF+ I  GC+ FCT+C+VPYTR
Sbjct: 155 YLSGDSKTLIDV-WDIDG-----NVIEGLPSARRYDLKAFVNIMYGCNNFCTYCIVPYTR 208

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G E SR+   V++E + L  NGV EITLLGQNVN++ G   D  K +F+ LL  L++I+G
Sbjct: 209 GRERSRNPEDVINEVKDLARNGVKEITLLGQNVNSY-GNDFDN-KVSFAKLLTMLNDIQG 266

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           + R+R+ TSHP+D+S+ LI A  +LD +   +HLPVQSGS  +LK MNR +T  +Y ++I
Sbjct: 267 IERIRFMTSHPKDISEELIDAVANLDKVCESIHLPVQSGSTAVLKKMNRHYTKDQYIELI 326

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
           ++I++  P++A+++D +VGFPGET++DF  T+D+++K+ Y  AF F YS R GT   NM 
Sbjct: 327 NKIKTKVPNVALTTDIMVGFPGETEEDFLDTLDVLEKVQYDSAFMFIYSVRKGTVAENMD 386

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSV 438
             +DE+VK +R   L  K  E     N   + +I+EVL+E    K+K +L+GR+   + V
Sbjct: 387 NHIDESVKKDRFNRLLSKANEIAELKNSKYMDEIVEVLVEGFSKKDKTRLMGRTRQNKLV 446

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYG 465
                   IG ++ V++T+ K  +L G
Sbjct: 447 NFIGDESMIGSLVNVKVTETKSFSLNG 473


>gi|260887308|ref|ZP_05898571.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Selenomonas sputigena
           ATCC 35185]
 gi|330838938|ref|YP_004413518.1| RNA modification enzyme, MiaB family [Selenomonas sputigena ATCC
           35185]
 gi|260862944|gb|EEX77444.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Selenomonas sputigena
           ATCC 35185]
 gi|329746702|gb|AEC00059.1| RNA modification enzyme, MiaB family [Selenomonas sputigena ATCC
           35185]
          Length = 444

 Score =  321 bits (823), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 184/448 (41%), Positives = 265/448 (59%), Gaps = 18/448 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +R F+  YGCQMN+ D+ RME    + GYER   M  ADLI+LNTC +RE A +KVY  +
Sbjct: 9   KRAFIGVYGCQMNISDAERMEGQLATLGYERTEDMARADLILLNTCCVRETAEDKVYGKI 68

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL---LE 141
           G I+++K +       L+  + GC+AQ EGE ++RR+P ++ V+G    + L      LE
Sbjct: 69  GEIKHIKRANPA----LIFGITGCMAQKEGEALIRRAPHIDFVLGTNKVHELKATVRQLE 124

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
            AR G  VVD         E + I      R   ++A++ I  GC+ FCT+C+VPY RG 
Sbjct: 125 SARRGP-VVDVLLGDAPLPENVPI-----ERTGRLSAWVPIMYGCNNFCTYCIVPYVRGR 178

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR    VV E  +    G  EITLLGQNVN++   G D +  +F++LL  +  +KG+ 
Sbjct: 179 EHSRRPEDVVREVEEAAAQGFKEITLLGQNVNSY---GRDHKLASFAELLLMVDAVKGVE 235

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+RY TSHP+D+SD +I A      + P+ HLPVQ GSDRIL++MNR +    YR +++R
Sbjct: 236 RVRYMTSHPKDLSDAVIDAVRQGRHICPHFHLPVQHGSDRILRAMNRVYRKDAYRSLVER 295

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           IR+  PD ++++D IVGFPGET++DF   +D + +I Y  A++F YS R GTP + M  Q
Sbjct: 296 IRAAVPDASLTTDLIVGFPGETEEDFGELLDFLREIRYDAAYTFLYSKRSGTPAATMEAQ 355

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVL 440
           V+++VK ERL  L +   E  +  N A  G + EVL E   + ++    GR+   + V+ 
Sbjct: 356 VEDSVKKERLHRLMEVQNEISLEKNAALKGTVQEVLAEGPSRTDEDVWTGRTGTNKIVLW 415

Query: 441 NSKNHNI-GDIIKVRITDVKISTLYGEL 467
             K     GDI++VRIT  +   L GEL
Sbjct: 416 RKKGQETEGDIVRVRITQPQTWVLKGEL 443


>gi|118443818|ref|YP_878177.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Clostridium
           novyi NT]
 gi|229890490|sp|A0Q0M5|MIAB_CLONN RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|118134274|gb|ABK61318.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Clostridium novyi NT]
          Length = 452

 Score =  321 bits (823), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 173/452 (38%), Positives = 278/452 (61%), Gaps = 17/452 (3%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           I  +RFF+ ++GCQMN  DS ++  +    GY R +  D+AD+++ NTC +RE A +KVY
Sbjct: 13  IYNKRFFISTWGCQMNEEDSEKISGLLKGIGYTRTDIRDEADVVIFNTCCVRENAEQKVY 72

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPEL 139
             LG ++ LK    ++  +L+++V GC+ Q +G  E+++ + P V+++ G    Y+LPE 
Sbjct: 73  GHLGELKALK----RKNPNLILIVTGCMMQQKGMPEKVMEKFPHVDIIAGTYNSYKLPEY 128

Query: 140 LERARF-GKRVVDTDYSVEDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197
           +ER +  G  +++    + DK     IV+G   +RK  + AF+TI  GC+ FC++C+VPY
Sbjct: 129 IERVKTEGNSIIE----IWDK--EKGIVEGLPVDRKSDIKAFVTIMYGCNNFCSYCIVPY 182

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257
            RG E SR    ++DE + L+  G  EITLLGQNVN++ GKGL+ E   F+ LL  +++I
Sbjct: 183 VRGRERSRDPQNIIDEIKDLVSKGYKEITLLGQNVNSY-GKGLEPE-INFATLLRMVNKI 240

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
            GL R+R+ TSHP+D+SD LIKA  + + +    H  +QSGS  IL+ MNR++T  +Y  
Sbjct: 241 DGLERIRFMTSHPKDVSDELIKAMAECEKVCEQGHFALQSGSTEILQKMNRKYTREDYLT 300

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
           ++ ++R   P++ IS+D I+G+PGET+ DF  T+ +V +I +  AF+F YS R GTP + 
Sbjct: 301 LVKKLRKAMPNVGISTDIIIGYPGETEKDFEDTLSIVKEIEFDSAFTFIYSKREGTPAAK 360

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQ 436
           + +QV E+VK  R   L + + E     N    G+ +EVL+E   K +  KL+GR+   +
Sbjct: 361 LEDQVPEDVKHTRFNKLVEAVNEIMARKNKEFEGKTVEVLVEGPSKNDDTKLMGRTRSGK 420

Query: 437 SVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            V  N     +G ++ ++IT     +L GE++
Sbjct: 421 LVNFNGCLDQVGKLVNIKITKANSFSLTGEII 452


>gi|296330914|ref|ZP_06873389.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
           subtilis subsp. spizizenii ATCC 6633]
 gi|305674432|ref|YP_003866104.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
           subtilis subsp. spizizenii str. W23]
 gi|296151919|gb|EFG92793.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
           subtilis subsp. spizizenii ATCC 6633]
 gi|305412676|gb|ADM37795.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
           subtilis subsp. spizizenii str. W23]
          Length = 509

 Score =  321 bits (822), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 178/448 (39%), Positives = 262/448 (58%), Gaps = 15/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++F++++YGCQMN +D+  M  +F + GYE  NS+DDA++I+LNTC IRE A  KV+  L
Sbjct: 66  RKFYIRTYGCQMNEHDTEVMAGIFMALGYEATNSVDDANVILLNTCAIRENAENKVFGEL 125

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G ++ LK    K   DL++ V GC++Q E     IL++ P V+++ G    +RLPELL  
Sbjct: 126 GHLKALK----KNNPDLILGVCGCMSQEESVVNRILKKHPFVDMIFGTHNIHRLPELLSE 181

Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           A   K +V   +S E D  E L  V  G      +  ++ I  GCDKFCT+C+VPYTRG 
Sbjct: 182 AYLSKEMVIEVWSKEGDVIENLPKVRNG-----KIKGWVNIMYGCDKFCTYCIVPYTRGK 236

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR   +++ E R+L   G  EITLLGQNVNA+ GK  +       DL+  L +I  + 
Sbjct: 237 ERSRRPEEIIQEVRRLASEGYKEITLLGQNVNAY-GKDFEDMTYGLGDLMDELRKI-DIP 294

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHPRD  D LI+       L+ ++HLPVQSGS  +LK M R++    Y +++ +
Sbjct: 295 RIRFTTSHPRDFDDRLIEVLAKGGNLLDHIHLPVQSGSSEVLKLMARKYDRERYMELVRK 354

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I++  P+ ++++D IVGFP ETD+ F  T+ L  ++ +  A++F YSPR GTP + M + 
Sbjct: 355 IKAAMPNASLTTDIIVGFPNETDEQFEETLSLYREVEFDSAYTFIYSPREGTPAAKMKDN 414

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440
           V   VK ERL  L   + E          G+++EVL+E   K     L G +   + V  
Sbjct: 415 VPMRVKKERLQRLNALVNEISAKKMKEYEGKVVEVLVEGESKNNPDILAGYTEKSKLVNF 474

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 IG I++V+I   K  +L GE+V
Sbjct: 475 KGPKEAIGKIVRVKIQQAKTWSLDGEMV 502


>gi|149183373|ref|ZP_01861809.1| YmcB [Bacillus sp. SG-1]
 gi|148848916|gb|EDL63130.1| YmcB [Bacillus sp. SG-1]
          Length = 521

 Score =  320 bits (821), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 177/448 (39%), Positives = 269/448 (60%), Gaps = 14/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++F++++YGCQMN +D+  M  +F + GYE  ++ DDAD+I+LNTC IRE A  KV+  L
Sbjct: 67  KKFYIRTYGCQMNEHDTEVMAGIFMALGYEATDNTDDADVILLNTCAIRENAENKVFGEL 126

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G +++LK    +E  +LL+ V GC++Q E    +IL+    V+++ G    +RLP +L  
Sbjct: 127 GHLKHLK----REKPELLIGVCGCMSQEESVVNKILKTYHQVDMIFGTHNIHRLPNILNE 182

Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           A   K +V   +S E D  E L  V     R+  + A++ I  GCDKFCT+C+VPYTRG 
Sbjct: 183 AYMSKAMVVEVWSKEGDVIENLPKV-----RRGNIKAWVNIMYGCDKFCTYCIVPYTRGK 237

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR   +++ E R L   G  E+TLLGQNVNA+     D E     DL+  L +I  + 
Sbjct: 238 ERSRRPEEIIQEVRHLAAQGYQEVTLLGQNVNAYGKDIEDLENYGLGDLMDELRKID-IP 296

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHPRD  D LI+       L+ ++HLPVQSGS  +LK M R++T   + +++ +
Sbjct: 297 RIRFTTSHPRDFDDHLIEVLAKKGNLVEHIHLPVQSGSSAVLKIMARKYTRERFLELVGK 356

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I++  P +A+++D IVG+P ET++ F  T+ L  ++G+  AF++ YSPR GTP + M + 
Sbjct: 357 IKAAMPGVALTTDIIVGYPNETEEQFEETLSLYREVGFESAFTYIYSPREGTPAAKMNDN 416

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440
           V   VK ERL  L + + E          G+I+EVL+E   K+  + L G +   + V  
Sbjct: 417 VPMEVKKERLQRLNQLVNEYSGEALKQYEGKIVEVLVEGESKKNPEILAGYTRRSKLVNF 476

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
            +    IG I+KV+ITD K  +L GE++
Sbjct: 477 KAPKTAIGKIVKVKITDTKSWSLNGEMI 504


>gi|261419508|ref|YP_003253190.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Geobacillus
           sp. Y412MC61]
 gi|319766323|ref|YP_004131824.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Geobacillus sp. Y412MC52]
 gi|261375965|gb|ACX78708.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Geobacillus sp. Y412MC61]
 gi|317111189|gb|ADU93681.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Geobacillus sp. Y412MC52]
          Length = 531

 Score =  320 bits (821), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 183/448 (40%), Positives = 267/448 (59%), Gaps = 15/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++F++++YGCQMN +D+  M  +F + GYE  +  ++A++I+LNTC IRE A  KV+  L
Sbjct: 80  RKFYIRTYGCQMNEHDTEVMAGIFMALGYEPTDRPEEANVILLNTCAIRENAENKVFGEL 139

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G ++ LK +      DLL+ V GC++Q E   ++IL++   V+++ G    +RLP +L  
Sbjct: 140 GYLKPLKTT----NPDLLLGVCGCMSQEESVVKKILKQYQYVDLIFGTHNIHRLPYILHE 195

Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           A   K +V   +S E D  E L  V     RK  + A++ I  GCDKFCT+C+VPYTRG 
Sbjct: 196 AYMSKEMVVEVWSKEGDVVENLPKV-----RKGKIKAWVNIMYGCDKFCTYCIVPYTRGK 250

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR    ++ E R+L   G  EITLLGQNVNA+ GK     + +  DL+  L +I  + 
Sbjct: 251 ERSRRPEDIIQEVRQLAAQGYKEITLLGQNVNAY-GKDFTDIQYSLGDLMDELRKI-DIA 308

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHPRD  D LI+       L+ ++HLPVQSGS  ILK M R++T  EY +++ +
Sbjct: 309 RIRFTTSHPRDFDDRLIEVLAKRGNLVEHIHLPVQSGSTEILKMMGRKYTREEYLELVRK 368

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I++  PD+A+++D IVGFP ETD+ F  T+ L  ++ +  A++F YSPR GTP +NM + 
Sbjct: 369 IKAAIPDVALTTDIIVGFPNETDEQFEETLSLYREVEFDSAYTFIYSPREGTPAANMKDN 428

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440
           V   VK ERL  L   ++E          GQ++EVL+E   K     L G +   + V  
Sbjct: 429 VPMEVKKERLKRLNDLVQEIAAKKMKQYEGQVVEVLVEGESKTNPDVLAGYTRKNKLVHF 488

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 IG ++ VRIT  K  TL GELV
Sbjct: 489 VGPKSLIGQLVNVRITQAKTWTLTGELV 516


>gi|261407895|ref|YP_003244136.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Paenibacillus
           sp. Y412MC10]
 gi|261284358|gb|ACX66329.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Paenibacillus sp.
           Y412MC10]
          Length = 519

 Score =  320 bits (820), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 176/447 (39%), Positives = 263/447 (58%), Gaps = 14/447 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + + V +YGCQMN +DS  ++ +    GY        AD+I+LNTC IRE A +KV+  L
Sbjct: 74  KHYIVYTYGCQMNEHDSETIKGLLEQMGYRATEDRKQADIILLNTCAIRENAEDKVFGEL 133

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G +++LK     E  D+L+ V GC++Q E     IL++   V+++ G    +RLP L++ 
Sbjct: 134 GHLKHLKT----EKPDMLLGVCGCMSQEESVVNRILQKHGFVDLIFGTHNVHRLPHLIQE 189

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           A F K +V   +S E       IV+    ++ G+  ++ I  GCDKFCT+C+VPYTRG E
Sbjct: 190 ALFSKEMVVEVWSKEG-----DIVENLPKKREGLRGWVNIMYGCDKFCTYCIVPYTRGKE 244

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR    V+ E R+L   G  EITLLGQNVNA+ GK  +  +  F DL+  + +I  + R
Sbjct: 245 RSRRPEDVIAEVRELARQGYKEITLLGQNVNAY-GKDFEDIQYRFGDLMDDIHKID-IPR 302

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHPRD  D LI+       L+ ++HLPVQSGS ++LK M+R++T   Y ++  +I
Sbjct: 303 VRFTTSHPRDFDDHLIEVLAKGGNLVEHIHLPVQSGSSQVLKKMSRKYTRETYLELAHKI 362

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           +   P++A ++D IVGFPGETD+ F  T+ LV ++GY  A++F YSPR GTP + M + V
Sbjct: 363 KKAIPNVAFTTDIIVGFPGETDEQFEETLSLVREVGYDSAYTFIYSPREGTPAAVMEDNV 422

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GRSPWLQSVVLN 441
              VK+ERL  L   + E     ND  +G  +EVL+E   K    ++ GR+   + V   
Sbjct: 423 PMEVKSERLQRLNAAINEYSRKSNDRLLGSTVEVLVEGVSKNNDSMLSGRTRTNKLVHFE 482

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                +G  + VRITD K   + G+++
Sbjct: 483 GSTELVGSFVNVRITDTKTWYIKGDMI 509


>gi|291484256|dbj|BAI85331.1| hypothetical protein BSNT_02749 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 509

 Score =  320 bits (820), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 178/448 (39%), Positives = 261/448 (58%), Gaps = 15/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++F++++YGCQMN +D+  M  +F + GYE  NS+DDA++I+LNTC IRE A  KV+  L
Sbjct: 66  RKFYIRTYGCQMNEHDTEVMAGIFMALGYEATNSVDDANVILLNTCAIRENAENKVFGEL 125

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G ++ LK    K   DL++ V GC++Q E     IL++ P V+++ G    +RLPELL  
Sbjct: 126 GHLKALK----KNNPDLILGVCGCMSQEESVVNRILKKHPFVDMIFGTHNIHRLPELLSE 181

Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           A   K +V   +S E D  E L  V  G      +  ++ I  GCDKFCT+C+VPYTRG 
Sbjct: 182 AYLSKEMVVEVWSKEGDVIENLPKVRNG-----KIKGWVNIMYGCDKFCTYCIVPYTRGK 236

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR    ++ E R+L   G  EITLLGQNVNA+ GK  +       DL+  L +I  + 
Sbjct: 237 ERSRRPEDIIQEVRRLASEGYKEITLLGQNVNAY-GKDFEDMTYGLGDLMDELRKI-DIP 294

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHPRD  D LI+       L+ ++HLPVQSGS  +LK M R++    Y +++ +
Sbjct: 295 RIRFTTSHPRDFDDRLIEVLAKGGNLLDHIHLPVQSGSSEVLKLMARKYDRERYMELVRK 354

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I++  P+ ++++D IVGFP ETD+ F  T+ L  ++ +  A++F YSPR GTP + M + 
Sbjct: 355 IKTAMPNASLTTDIIVGFPNETDEQFEETLSLYREVEFDSAYTFIYSPREGTPAAKMKDN 414

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440
           V   VK ERL  L   + E          G+++EVL+E   K     L G +   + V  
Sbjct: 415 VPMRVKKERLQRLNALVNEISAKKMKEYEGKVVEVLVEGESKNNPDILAGYTEKSKLVNF 474

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 IG I++V+I   K  +L GE+V
Sbjct: 475 KGPKEAIGKIVRVKIQQAKTWSLDGEMV 502


>gi|307243249|ref|ZP_07525420.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Peptostreptococcus
           stomatis DSM 17678]
 gi|306493377|gb|EFM65359.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Peptostreptococcus
           stomatis DSM 17678]
          Length = 479

 Score =  320 bits (820), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 178/450 (39%), Positives = 279/450 (62%), Gaps = 16/450 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + +F  ++GCQMN +DS  + +M  + GY +  S D ADL++ NTC +RE A  KVY  L
Sbjct: 39  KSYFCTTFGCQMNEHDSEMLINMLEAMGYVQALSEDQADLVIYNTCAVRENAELKVYGNL 98

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G ++++K  R     D+ +VV GC+ Q     EEI ++   V+++ G    Y+ PELLE 
Sbjct: 99  GHLKSIKKKR----PDMKIVVCGCMMQQPHVVEEIKKKYRHVDLIFGTHNLYKFPELLES 154

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
                +++   + V+ +     +V+G   NRK  + AF+ I  GC+ FCT+C+VPYTRG 
Sbjct: 155 TFNRDKIIVDVWDVDGE-----VVEGLKSNRKFEIKAFVNIMYGCNNFCTYCIVPYTRGR 209

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL-DGEKCTFSDLLYSLSEIKGL 260
           E SR    ++DE R L+ +G  E+TLLGQNVN++ GK L D +K +F+ LL  +++I GL
Sbjct: 210 ERSRKPGDIIDEIRSLVKDGTKEVTLLGQNVNSY-GKTLEDDQKISFAQLLREVNKIDGL 268

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+ TSHP+D+SD +I A  D D +  +LHLP Q+GS  +LK MNR +T  +Y +II+
Sbjct: 269 ERIRFMTSHPKDISDDVIYAMRDCDKVCEFLHLPFQAGSTSLLKKMNRHYTKEDYLKIIE 328

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           + +   P++A S+D ++GFPGETD D   T+D+ +++ Y  AF+F YS R GTP + ML+
Sbjct: 329 KAKREIPNLAFSTDIMIGFPGETDQDVDDTIDICEQVRYDSAFTFIYSKRRGTPAAKMLD 388

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRSPWLQSVV 439
           QV ++VK +R   + + +       N   +G+ +EVL+E   K+ +  L G+S   ++V 
Sbjct: 389 QVPDDVKHQRFERVLEVVNRISGEKNANYLGKTLEVLVEGASKKNEAVLTGKSRHNKTVN 448

Query: 440 LNSKNHN-IGDIIKVRITDVKISTLYGELV 468
               + + IG +++V+ITD K  +L GELV
Sbjct: 449 FTGGDKSMIGKLVQVKITDPKSFSLNGELV 478


>gi|168186342|ref|ZP_02620977.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Clostridium botulinum C
           str. Eklund]
 gi|169295705|gb|EDS77838.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Clostridium botulinum C
           str. Eklund]
          Length = 447

 Score =  320 bits (820), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 171/449 (38%), Positives = 278/449 (61%), Gaps = 17/449 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +RFF+ ++GCQMN  DS ++  +    GY R +  D+AD+++ NTC +RE A +KVY  L
Sbjct: 11  KRFFISTWGCQMNEEDSEKISGLLKGIGYTRTDIRDEADVVIFNTCCVRENAEQKVYGHL 70

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G ++ LK    ++  +L+++V GC+ Q +G  E+++ + P V+++ G    Y+LPE +ER
Sbjct: 71  GELKALK----RKNPNLILIVTGCMMQQKGMPEKVMEKFPHVDIIAGTYNSYKLPEYIER 126

Query: 143 ARF-GKRVVDTDYSVEDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
            +  G  +++    + DK     IV+G   +RK  + AF+TI  GC+ FC++C+VPY RG
Sbjct: 127 VKTEGNSIIE----IWDK--EKGIVEGLPVDRKSDIKAFVTIMYGCNNFCSYCIVPYVRG 180

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E SR    ++DE + L+  G  EITLLGQNVN++ GKGL+ E  +F+DLL  +++I GL
Sbjct: 181 RERSRDPKNIIDEIKDLVSKGYKEITLLGQNVNSY-GKGLEPE-ISFADLLRMVNKIDGL 238

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+ TSHP+D+SD LI+A  + D +    H  +QSGS  +L+ MNR++T  +Y  ++ 
Sbjct: 239 ERIRFMTSHPKDVSDELIEAMAECDKVCEQGHFALQSGSTEVLEKMNRKYTREDYLTLVK 298

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R   P++ IS+D I+G+PGET+ DF  T+ +V +I +  AF+F YS R GTP + + +
Sbjct: 299 KLRKTMPNVGISTDIIIGYPGETEKDFEDTLSIVKEIEFDSAFTFIYSKREGTPAAKLED 358

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVV 439
           QV E+VK  R   L + + E     N     + +EVL+E   K +  KL+GR+   + V 
Sbjct: 359 QVPEDVKHTRFNKLVEAVNEIMARKNKDFEEKTVEVLVEGPSKNDDTKLMGRTRSGKLVN 418

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
            N     +G ++ ++IT     +L GE++
Sbjct: 419 FNGCLDQVGKLVNIKITKANSFSLTGEII 447


>gi|260892471|ref|YP_003238568.1| RNA modification enzyme, MiaB family [Ammonifex degensii KC4]
 gi|260864612|gb|ACX51718.1| RNA modification enzyme, MiaB family [Ammonifex degensii KC4]
          Length = 447

 Score =  320 bits (820), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 185/448 (41%), Positives = 270/448 (60%), Gaps = 21/448 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           ++++ +YGCQMN +DS  M  +    GY R  S ++ADLI+LNTC +RE A  KV+  LG
Sbjct: 9   KYYIFTYGCQMNEWDSEVMAGLVEEMGYTRAGSPEEADLILLNTCCVRESAENKVWGLLG 68

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGE--EILRRSPIVNVVVGPQTYYRLPELLERA 143
            +  LK  R      LL+ V GC+ Q  G   EI RR P V+++VG    + LP L+  A
Sbjct: 69  SLGRLKQRRPW----LLLGVTGCLPQRPGAAAEIKRRFPFVDLIVGTYNRHELPRLILEA 124

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             G+ VV      ++  E L I      R+  + A++ I  GC+ FCT+C+VPY RG E 
Sbjct: 125 ERGQ-VVAVSPEEQEIVEGLPI-----RRESRLRAWVPIMFGCNNFCTYCIVPYVRGKER 178

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR    ++ E ++L   G  EI LLGQNVNA+ GKGL     TF+DLL  L+ ++G+ R+
Sbjct: 179 SRRPEDILREVKELAKEGYREIFLLGQNVNAY-GKGLQ-PPVTFADLLRQLNAVEGIWRI 236

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           RYTTSHPRD  + LI+A  +L  +    HLPVQ+GSD+IL+ M R +T  +Y  ++ RIR
Sbjct: 237 RYTTSHPRDFGEDLIRAVAELPKVCENFHLPVQAGSDKILRRMGRGYTRQDYLNLVRRIR 296

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
            V P  + S+D +VGFPGET++DF  T+ LV ++G+ QAF F Y+PR GTP ++  +QV 
Sbjct: 297 EVLPQASFSTDIMVGFPGETEEDFEQTLLLVREVGFDQAFIFIYNPRPGTPAASFPDQVP 356

Query: 384 ENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVV 439
             VK E   RLL LQ+ +  ++   N A VG++ EVL+E   +    +L GR+   ++V+
Sbjct: 357 HEVKVERIKRLLALQQAISRER---NRAEVGKVHEVLVEGPSRTNPDRLEGRTRTYKTVI 413

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGEL 467
           L+      G ++ VRIT   ++ L G++
Sbjct: 414 LDGTPELTGKLVAVRITAGYLTHLEGKV 441


>gi|319649479|ref|ZP_08003635.1| YmcB protein [Bacillus sp. 2_A_57_CT2]
 gi|317398641|gb|EFV79323.1| YmcB protein [Bacillus sp. 2_A_57_CT2]
          Length = 515

 Score =  320 bits (819), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 177/448 (39%), Positives = 265/448 (59%), Gaps = 15/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++F++++YGCQMN +D+  M  +F   GYE   S++DA++I+LNTC IRE A  KV+  L
Sbjct: 69  RKFYIRTYGCQMNEHDTEVMAGIFLGLGYEHTESVEDANVILLNTCAIRENAENKVFGEL 128

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G +++LK    KE  DLL+ V GC++Q E    +IL+    V+++ G    +RLP +L+ 
Sbjct: 129 GHLKHLK----KENPDLLIGVCGCMSQEESVVNKILKTYNQVDMIFGTHNIHRLPNILQE 184

Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           A   K +V   +S E D  E L  V     R+  + A++ I  GCDKFCT+C+VPYTRG 
Sbjct: 185 AYMSKEMVIEVWSKEGDVIENLPKV-----RRGNIKAWVNIMYGCDKFCTYCIVPYTRGK 239

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR    ++ E R+L   G  EITLLGQNVNA+ GK  +       DL+  + +I  + 
Sbjct: 240 ERSRRPEDIIQEVRQLAAQGYQEITLLGQNVNAY-GKDFEDMNYGLGDLMDEMRKID-IP 297

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHPRD  D LI+       L+ ++HLPVQSGS  +LK M R++T  +Y +++ +
Sbjct: 298 RVRFTTSHPRDFDDHLIEVLAKGGNLVEHIHLPVQSGSTDVLKIMARKYTREQYLELVRK 357

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I++  P+   ++D IVG+P ET++ F  T+ L  ++G+  A++F YSPR GTP + M++ 
Sbjct: 358 IKAAIPEATFTTDIIVGYPNETEEQFEETISLYREVGFEAAYTFIYSPREGTPAAKMVDN 417

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440
           V   VK ERL  L   + E          GQ +EVL+E   K   + L G +   + V  
Sbjct: 418 VPMEVKKERLQRLNAVVNELSAEAMKKYKGQTVEVLVEGESKNNPEILAGYTRKNKLVNF 477

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 IG I+ V++TD K  +L GE+V
Sbjct: 478 KGPKTAIGKIVNVKVTDAKTWSLNGEMV 505


>gi|170759550|ref|YP_001787122.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Clostridium botulinum A3
           str. Loch Maree]
 gi|229890489|sp|B1KSA4|MIAB_CLOBM RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|169406539|gb|ACA54950.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Clostridium botulinum A3
           str. Loch Maree]
          Length = 450

 Score =  320 bits (819), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 177/443 (39%), Positives = 265/443 (59%), Gaps = 13/443 (2%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           FF++++GCQMN  DS ++  M   +GY R    ++AD+I+ NTC +RE A  KVY  LG 
Sbjct: 16  FFIETWGCQMNEEDSEKLSGMLKKEGYIRTEERENADVIIFNTCCVRENAELKVYGNLGI 75

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           ++ LK+    +  +L++ V GC+ Q +G  E I ++ P V++++G    +  P  L   +
Sbjct: 76  LKGLKS----KNPNLIIAVTGCMMQQKGMAETIKKKFPFVDIIIGTHNLHNFPNYLNEVK 131

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
                +      ED      I +   +RK  + AF+TI  GC+ FCT+C+VPY RG E S
Sbjct: 132 KKDTSILKIQEKEDSI----IENMPIDRKNSMKAFVTIMYGCNNFCTYCIVPYVRGRERS 187

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R+   + DE +KLI  G  EITLLGQNVN++ GK L+  K TF+DLL  ++ I GL R+R
Sbjct: 188 RTPENIEDEIKKLISEGYKEITLLGQNVNSY-GKDLE-PKVTFADLLERVNTIDGLERVR 245

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           + TSHP+D++D +I+A    D L   +HLPVQSGS  ILK MNR +   +Y  ++ +I+ 
Sbjct: 246 FMTSHPKDLTDDVIEAIAKCDKLCEQIHLPVQSGSSEILKKMNRHYDREKYLDVVSKIKK 305

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           + P++A+S+D IVGFPGET+ DF  T+ LV ++ Y  AF+F YS R GTP +   +QV E
Sbjct: 306 LIPNVALSTDIIVGFPGETEKDFEETLSLVKEVEYDSAFTFLYSIRKGTPAAKFEDQVPE 365

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVLNSK 443
           +VK +R   L + + E     N A  G+I EVL+E   K ++ KL+GR+   + V     
Sbjct: 366 DVKHKRFNRLVEVVNEISAKKNKAYEGKIEEVLVEGTSKNDENKLMGRTRTGKLVNFIGD 425

Query: 444 NHNIGDIIKVRITDVKISTLYGE 466
             +IG ++ V+I      +L GE
Sbjct: 426 KDSIGKLVNVKIIKANSFSLTGE 448


>gi|321315467|ref|YP_004207754.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
           subtilis BSn5]
 gi|320021741|gb|ADV96727.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
           subtilis BSn5]
          Length = 509

 Score =  319 bits (818), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 178/448 (39%), Positives = 260/448 (58%), Gaps = 15/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++F++++YGCQMN +D+  M  +F + GYE  NS+DDA++I+LNTC IRE A  KV+  L
Sbjct: 66  RKFYIRTYGCQMNEHDTEVMAGIFMALGYEATNSVDDANVILLNTCAIRENAENKVFGEL 125

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G ++ LK    K   DL++ V GC++Q E     IL++ P V+++ G    +RLPELL  
Sbjct: 126 GHLKALK----KNNPDLILGVCGCMSQEESVVNRILKKHPFVDMIFGTHNIHRLPELLSE 181

Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           A   K +V   +S E D  E L  V  G      +  ++ I  GCDKFCT+C+VPYTRG 
Sbjct: 182 AYLSKEMVVEVWSKEGDVIENLPKVRNG-----KIKGWVNIMYGCDKFCTYCIVPYTRGK 236

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR    ++ E R+L   G  EITLLGQNVNA+ GK  +       DL+  L +I  + 
Sbjct: 237 ERSRRPEDIIQEVRRLASEGYKEITLLGQNVNAY-GKDFEDMTYGLGDLMDELRKI-DIP 294

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHPRD  D LI+       L+ ++HLPVQSGS  +LK M R++    Y +++ +
Sbjct: 295 RIRFTTSHPRDFDDRLIEVLAKGGNLLDHIHLPVQSGSSEVLKLMARKYDRERYMELVRK 354

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I+   P+ ++++D IVGFP ETD+ F  T+ L  ++ +  A++F YSPR GTP + M + 
Sbjct: 355 IKEAMPNASLTTDIIVGFPNETDEQFEETLSLYREVEFDSAYTFIYSPREGTPAAKMKDN 414

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440
           V   VK ERL  L   + E          G+++EVL+E   K     L G +   + V  
Sbjct: 415 VPMRVKKERLQRLNALVNEISAKKMKEYEGKVVEVLVEGESKNNPDILAGYTEKSKLVNF 474

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 IG I++V+I   K  +L GE+V
Sbjct: 475 KGPKEAIGKIVRVKIQQAKTWSLDGEMV 502


>gi|16078764|ref|NP_389583.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
           subtilis subsp. subtilis str. 168]
 gi|221309576|ref|ZP_03591423.1| hypothetical protein Bsubs1_09356 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221313900|ref|ZP_03595705.1| hypothetical protein BsubsN3_09287 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221318823|ref|ZP_03600117.1| hypothetical protein BsubsJ_09216 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221323095|ref|ZP_03604389.1| hypothetical protein BsubsS_09327 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|6226482|sp|O31778|MIAB_BACSU RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|2634073|emb|CAB13574.1| putative conserved AdoMet radical enzyme for tRNA modification
           [Bacillus subtilis subsp. subtilis str. 168]
          Length = 509

 Score =  319 bits (818), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 178/448 (39%), Positives = 260/448 (58%), Gaps = 15/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++F++++YGCQMN +D+  M  +F + GYE  NS+DDA++I+LNTC IRE A  KV+  L
Sbjct: 66  RKFYIRTYGCQMNEHDTEVMAGIFMALGYEATNSVDDANVILLNTCAIRENAENKVFGEL 125

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G ++ LK    K   DL++ V GC++Q E     IL++ P V+++ G    +RLPELL  
Sbjct: 126 GHLKALK----KNNPDLILGVCGCMSQEESVVNRILKKHPFVDMIFGTHNIHRLPELLSE 181

Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           A   K +V   +S E D  E L  V  G      +  ++ I  GCDKFCT+C+VPYTRG 
Sbjct: 182 AYLSKEMVVEVWSKEGDVIENLPKVRNG-----KIKGWVNIMYGCDKFCTYCIVPYTRGK 236

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR    ++ E R+L   G  EITLLGQNVNA+ GK  +       DL+  L +I  + 
Sbjct: 237 ERSRRPEDIIQEVRRLASEGYKEITLLGQNVNAY-GKDFEDMTYGLGDLMDELRKI-DIP 294

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHPRD  D LI+       L+ ++HLPVQSGS  +LK M R++    Y +++ +
Sbjct: 295 RIRFTTSHPRDFDDRLIEVLAKGGNLLDHIHLPVQSGSSEVLKLMARKYDRERYMELVRK 354

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I+   P+ ++++D IVGFP ETD+ F  T+ L  ++ +  A++F YSPR GTP + M + 
Sbjct: 355 IKEAMPNASLTTDIIVGFPNETDEQFEETLSLYREVEFDSAYTFIYSPREGTPAAKMKDN 414

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440
           V   VK ERL  L   + E          G+++EVL+E   K     L G +   + V  
Sbjct: 415 VPMRVKKERLQRLNALVNEISAKKMKEYEGKVVEVLVEGESKNNPDILAGYTEKSKLVNF 474

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 IG I++V+I   K  +L GE+V
Sbjct: 475 KGPKEAIGKIVRVKIQQAKTWSLDGEMV 502


>gi|75760978|ref|ZP_00740984.1| tRNA 2-methylthioadenosine synthase [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|74491542|gb|EAO54752.1| tRNA 2-methylthioadenosine synthase [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
          Length = 515

 Score =  319 bits (818), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 179/445 (40%), Positives = 267/445 (60%), Gaps = 15/445 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++F++++YGCQMN +D+  M  +F + GYE   S +DAD+++LNTC IRE A  KV+  L
Sbjct: 81  RKFYIRTYGCQMNEHDTEVMAGIFTTLGYEPTFSTEDADVVLLNTCAIRENAENKVFGEL 140

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G +++LK    +   DLL+ V GC++Q E    +I++++  V++V G    +RLP +L+ 
Sbjct: 141 GHLKSLK----RRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKD 196

Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           A F K  V   +S E D  E L  V     R+  + A++ I  GCDKFCT+C+VPYTRG 
Sbjct: 197 AMFSKETVVEVWSKEGDVIENLPKV-----RRGDIKAWVNIMYGCDKFCTYCIVPYTRGK 251

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR    ++ E R L  NG  EITLLGQNVNA+ GK  +  +    DL+  L ++  + 
Sbjct: 252 ERSRRPEDIIQEIRHLAANGYKEITLLGQNVNAY-GKDFEDVEYGLGDLMDELRKVD-IA 309

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHPRD  D LI+  G    L+ ++HLPVQSGS  +LK M R+++   Y +++ +
Sbjct: 310 RIRFTTSHPRDFDDHLIEVLGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRK 369

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I+   PD  +++D IVGFP ETD+ F  TM L  ++G+  AF+F YSPR GTP + M + 
Sbjct: 370 IKEAIPDAVLTTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDN 429

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440
           V   VK ERL  L   +    +  N    GQI+EVL++   K   + L G +   + V  
Sbjct: 430 VPMEVKKERLQRLNTLVNTLAIEKNSRYKGQIVEVLVDGESKNNPEVLAGYTRTNKLVNF 489

Query: 441 NSKNHNIGDIIKVRITDVKISTLYG 465
            +    IG ++KV++T+ K+  L G
Sbjct: 490 VASKSLIGQLVKVKVTEAKLGLLTG 514


>gi|225872143|ref|YP_002753598.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Acidobacterium capsulatum
           ATCC 51196]
 gi|225791726|gb|ACO31816.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Acidobacterium capsulatum
           ATCC 51196]
          Length = 448

 Score =  319 bits (818), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 173/445 (38%), Positives = 270/445 (60%), Gaps = 15/445 (3%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           F+++++GCQMNV+DS ++      QGY +V     ADLI+ NTC IR+KA +KV++ L  
Sbjct: 15  FYLETFGCQMNVHDSEKVIGTLQQQGYTQVEEEAAADLILYNTCSIRDKAEQKVFNRLND 74

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
            + L     + G      V GCVAQ EGE+I  R+P V++V G  +Y +LPE+L +   G
Sbjct: 75  YKKLHAQGKRFG------VLGCVAQQEGEKIFERAPYVSLVSGSASYRKLPEMLVQLEAG 128

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
              +     ++D+    +       R      ++TI EGCDKFC +CVVPYTRG E SR 
Sbjct: 129 ASRIT---GLDDRQTEETFETEFTARSNAHRGYITIIEGCDKFCAYCVVPYTRGKERSRK 185

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
            S V+ EAR++ + G  EI LLGQNVN++     +G+K +F++LL ++ E+ G+VR+R+T
Sbjct: 186 SSSVLAEARRMAEAGYTEIQLLGQNVNSYHDP--EGKK-SFAELLAAVGEVPGIVRVRFT 242

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
           TSHPRD +  +++A   +  L  ++HLP+QSGS R+L+ M R +T  +Y + I  I++ R
Sbjct: 243 TSHPRDFTRDIVEAIDAVPALCDHVHLPIQSGSSRVLQLMQREYTREQYLEKISWIKTAR 302

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
             I++++D IVGFPGET DDF  T+ L  ++ Y   F+FKYSPR  TP  +M + + E  
Sbjct: 303 RPISMTTDMIVGFPGETPDDFEETITLAAEVQYDGIFAFKYSPRPNTPAIHMSDSIPEEE 362

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHN 446
           K+ RL  L  + RE Q       VG++++V++E H   +G+++GR+   +++   +    
Sbjct: 363 KSMRLQILLDRQREIQRINYARHVGEVMDVMVEGHNHARGQVIGRTSQNKTLNFTTSQPI 422

Query: 447 I---GDIIKVRITDVKISTLYGELV 468
           +   G  +KVR+T    ++L GE V
Sbjct: 423 LPAPGSYLKVRVTRSLPNSLVGEAV 447


>gi|91202951|emb|CAJ72590.1| conserved hypothetical protein [Candidatus Kuenenia
           stuttgartiensis]
          Length = 447

 Score =  319 bits (818), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 184/449 (40%), Positives = 274/449 (61%), Gaps = 27/449 (6%)

Query: 28  FVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRI 87
           F +++GCQMN  D+     +    GY  V+ +++AD+I+ NTC +R+ A +KVYS LG +
Sbjct: 17  FFETFGCQMNKLDAELSLGLLQEDGYSIVDKVEEADVILYNTCSVRQHAEDKVYSHLGAL 76

Query: 88  RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR-FG 146
           R LK    K+  D+++ V GC+AQ + + I +R P V++V G + + RLPELL + R  G
Sbjct: 77  RTLK----KKHPDVIIGVLGCMAQKDAQSIFKRMPHVDLVCGTRMFTRLPELLLKIRNHG 132

Query: 147 KRVVDTDYSVEDKFERLSIVD----GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
             V+  D   ED+     IVD      Y R     AF+T+  GCD +C++C+VPY RG E
Sbjct: 133 NHVLAVD---EDE-----IVDVKRIAAY-RPNVYQAFVTVMRGCDNYCSYCIVPYVRGRE 183

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR+++ V  E  +L+ NG  EITLLGQN+N++ GK L G   T  DLL  L+ I+ L R
Sbjct: 184 VSRTIADVEREVLELVSNGCREITLLGQNINSY-GKSLPG-NITLGDLLIELNGIEKLER 241

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LR+ TSHP+DMS  LI+    LD    YLH+P QSGSDRILK M+R +TA  YR++I   
Sbjct: 242 LRFVTSHPKDMSRDLIRTMSQLDKACEYLHMPAQSGSDRILKKMHRGYTAGYYRELIQYA 301

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R + P I ++ DFIVGFPGET++DF+ T+ L++ I +  +F FKYS R GT  + + + V
Sbjct: 302 RDLMPTIKVAGDFIVGFPGETEEDFQETVCLMEDIRFQNSFIFKYSTRTGTKAAELTDDV 361

Query: 383 DENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSV 438
            + +K +R   LL LQKK+  ++   N   +G+ ++VL+E   K +  KL GR+     V
Sbjct: 362 PDEIKKKRNTTLLDLQKKISLEE---NKKLIGRKLQVLVEGASKSDPNKLSGRTRQNNIV 418

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGEL 467
           V   +   +G ++ + I +    TL+G +
Sbjct: 419 VFKGQPALVGTLVDITINEATDLTLFGTI 447


>gi|320539647|ref|ZP_08039311.1| putative truncated isopentenyl-adenosine A37 tRNA methylthiolase
           [Serratia symbiotica str. Tucson]
 gi|320030259|gb|EFW12274.1| putative truncated isopentenyl-adenosine A37 tRNA methylthiolase
           [Serratia symbiotica str. Tucson]
          Length = 407

 Score =  319 bits (818), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 168/378 (44%), Positives = 237/378 (62%), Gaps = 10/378 (2%)

Query: 95  IKEGGDLLVV-VAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR--VVD 151
           +KE    L++ V GCVA  EGE I  R+P V+VV GPQT +RLPE++   + G R  +VD
Sbjct: 2   LKEKNPALIIGVGGCVASQEGEHIRSRAPCVDVVFGPQTLHRLPEMINHVQ-GTRSPIVD 60

Query: 152 TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVV 211
             +   +KF+RL        R  G  AF++I EGC+K+CTFCVVPYTRG E+SR    V+
Sbjct: 61  ISFPEIEKFDRLP-----EPRAEGPCAFVSIMEGCNKYCTFCVVPYTRGEEVSRPSDDVL 115

Query: 212 DEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPR 271
            E  +L   GV E+ LLGQNVNA+R    DG+ CTF++LL  +  I G+ R+R+TTSHP 
Sbjct: 116 FEIAQLAAQGVREVNLLGQNVNAYRATTYDGDICTFAELLRLVGAIDGIDRIRFTTSHPI 175

Query: 272 DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAI 331
           + +D +I  + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II ++R VRP++  
Sbjct: 176 EFTDDVIAVYEDTPELVSFLHLPVQSGSDRILTMMKRAHTALEYKAIIRKLRKVRPNMQF 235

Query: 332 SSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERL 391
           SSDFI+GFPGET  DF  T+ L+ ++ +  +FSF YSPR GTP + M++ V E  K +RL
Sbjct: 236 SSDFIIGFPGETQADFEQTLKLIAEVNFDASFSFIYSPRPGTPAAEMIDDVSEEEKKQRL 295

Query: 392 LCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNSKNHNIGDI 450
             LQ ++ +Q + F+   +G +  +L+E   ++   +L GR+   + V        IG  
Sbjct: 296 YILQDRINQQVLQFSRRMLGSVQRILVEGTSRKNVMELAGRTECNRMVNFEGSPEMIGQF 355

Query: 451 IKVRITDVKISTLYGELV 468
           + V IT+V   +L G +V
Sbjct: 356 VDVEITEVWAHSLRGTVV 373


>gi|303241534|ref|ZP_07328035.1| RNA modification enzyme, MiaB family [Acetivibrio cellulolyticus
           CD2]
 gi|302590952|gb|EFL60699.1| RNA modification enzyme, MiaB family [Acetivibrio cellulolyticus
           CD2]
          Length = 477

 Score =  319 bits (818), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 179/448 (39%), Positives = 274/448 (61%), Gaps = 15/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +RF++ ++GCQMN +DS ++  M    GY     MD++DLI+ NTC +RE A  KVY  L
Sbjct: 41  KRFYLATFGCQMNEHDSEKLAGMLGEMGYSECEDMDESDLIIFNTCCVRENAELKVYGHL 100

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G +++LK    ++  D+++ + GC+ Q     E I +    V+++ G    Y+ PELL  
Sbjct: 101 GAMKHLK----EKNPDMIIAMCGCMMQQPEVVEHIKKVYRQVDLIFGTHNLYKFPELLFS 156

Query: 143 A-RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           A    K V+D   S+    E + I      RK  V A++T+  GC+ FC++C+VPY RG 
Sbjct: 157 AINSNKTVIDIMDSIGLIAEEMPI-----ERKDEVKAWVTVMYGCNNFCSYCIVPYVRGR 211

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR +  +VDE R L   G+ EITLLGQNVN++ GK L G   TF+ LL  L+E++G+ 
Sbjct: 212 ERSRYIENIVDEVRMLGRQGLKEITLLGQNVNSY-GKDL-GNDTTFAKLLGELNEVEGIE 269

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+ TSHP+D+SD LI A  DL+ +  +LHLP QSGS RILK MNR+++  +Y  ++++
Sbjct: 270 RIRFMTSHPKDLSDELIFAMRDLNKVCEHLHLPFQSGSTRILKEMNRKYSKEDYLNLLEK 329

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           ++   P I+++SD IVGFPGET++DF+ T+D+V+K  + Q +SF YS R GTP +  ++Q
Sbjct: 330 VKINIPGISLTSDIIVGFPGETEEDFQDTLDVVEKGRFDQIYSFLYSKRTGTPAAKSVDQ 389

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL-VGRSPWLQSVVL 440
           V E VK ER   L +         N   + + IEVL+E   K   K+  GR+   + V  
Sbjct: 390 VPEEVKKERFQRLMEVQNRISNEINHEYLDKEIEVLVEGESKTNDKIYTGRTRENKIVNF 449

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
           +  +  IG +++V+I  VK  +L G+++
Sbjct: 450 DGNSEMIGKLVRVKIDTVKTWSLEGKVL 477


>gi|297530521|ref|YP_003671796.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Geobacillus sp. C56-T3]
 gi|297253773|gb|ADI27219.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Geobacillus sp. C56-T3]
          Length = 531

 Score =  319 bits (818), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 183/448 (40%), Positives = 266/448 (59%), Gaps = 15/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++F++++YGCQMN +D+  M  +F + GYE  +  ++A++I+LNTC IRE A  KV+  L
Sbjct: 80  RKFYIRTYGCQMNEHDTEVMAGIFMALGYEPTDRPEEANVILLNTCAIRENAENKVFGEL 139

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G ++ LK +      DLL+ V GC++Q E   ++IL++   V+++ G    +RLP +L  
Sbjct: 140 GYLKPLKTT----NPDLLLGVCGCMSQEESVVKKILKQYQYVDLIFGTHNIHRLPYILHE 195

Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           A   K +V   +S E D  E L  V     RK  + A++ I  GCDKFCT+C+VPYTRG 
Sbjct: 196 AYMSKEMVVEVWSKEGDVVENLPKV-----RKGKIKAWVNIMYGCDKFCTYCIVPYTRGK 250

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR    ++ E R+L   G  EITLLGQNVNA+ GK     +    DL+  L +I  + 
Sbjct: 251 ERSRRPEDIIQEVRQLAAQGYKEITLLGQNVNAY-GKDFTDIQYGLGDLMDELRKI-DIA 308

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHPRD  D LI+       L+ ++HLPVQSGS  ILK M R++T  EY +++ +
Sbjct: 309 RIRFTTSHPRDFDDRLIEVLAKRGNLVEHIHLPVQSGSTEILKMMGRKYTREEYLELVRK 368

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I++  PD+A+++D IVGFP ETD+ F  T+ L  ++ +  A++F YSPR GTP +NM + 
Sbjct: 369 IKAAIPDVALTTDIIVGFPNETDEQFEETLSLYREVEFDSAYTFIYSPREGTPAANMKDN 428

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440
           V   VK ERL  L   ++E          GQ++EVL+E   K     L G +   + V  
Sbjct: 429 VPMEVKKERLKRLNDLVQEIAAKKMKQYEGQVVEVLVEGESKTNPDVLAGYTRKNKLVHF 488

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 IG ++ VRIT  K  TL GELV
Sbjct: 489 VGPKSLIGQLVNVRITQAKTWTLTGELV 516


>gi|56419838|ref|YP_147156.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Geobacillus
           kaustophilus HTA426]
 gi|81347575|sp|Q5L0E8|MIAB_GEOKA RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|56379680|dbj|BAD75588.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
          Length = 531

 Score =  319 bits (818), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 183/448 (40%), Positives = 266/448 (59%), Gaps = 15/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++F++++YGCQMN +D+  M  +F + GYE  +  ++A++I+LNTC IRE A  KV+  L
Sbjct: 80  RKFYIRTYGCQMNEHDTEVMAGIFMALGYEPTDRPEEANVILLNTCAIRENAENKVFGEL 139

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G ++ LK +      DLL+ V GC++Q E   ++IL++   V+++ G    +RLP +L  
Sbjct: 140 GYLKPLKTT----NPDLLLGVCGCMSQEESVVKKILKQYQYVDLIFGTHNIHRLPYILHE 195

Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           A   K +V   +S E D  E L  V     RK  + A++ I  GCDKFCT+C+VPYTRG 
Sbjct: 196 AYMSKEMVVEVWSKEGDVVENLPKV-----RKGKIKAWVNIMYGCDKFCTYCIVPYTRGK 250

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR    ++ E R+L   G  EITLLGQNVNA+ GK     +    DL+  L +I  + 
Sbjct: 251 ERSRRPEDIIQEVRQLAAQGYKEITLLGQNVNAY-GKDFTDIQYGLGDLMDELRKI-DIA 308

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHPRD  D LI+       L+ ++HLPVQSGS  ILK M R++T  EY +++ +
Sbjct: 309 RIRFTTSHPRDFDDRLIEVLAKRGNLVEHIHLPVQSGSTEILKMMGRKYTREEYLELVRK 368

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I++  PD+A+++D IVGFP ETD+ F  T+ L  ++ +  A++F YSPR GTP +NM + 
Sbjct: 369 IKAAIPDVALTTDIIVGFPNETDEQFEETLSLYREVEFDSAYTFIYSPREGTPAANMKDN 428

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440
           V   VK ERL  L   ++E          GQ++EVL+E   K     L G +   + V  
Sbjct: 429 VPMEVKKERLKRLNDLVQEIAAKKMKQYEGQVVEVLVEGESKTNPDVLAGYTRKNKLVHF 488

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 IG ++ VRIT  K  TL GELV
Sbjct: 489 VGPKSLIGQLVNVRITQAKTWTLTGELV 516


>gi|296132994|ref|YP_003640241.1| RNA modification enzyme, MiaB family [Thermincola sp. JR]
 gi|296031572|gb|ADG82340.1| RNA modification enzyme, MiaB family [Thermincola potens JR]
          Length = 449

 Score =  319 bits (817), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 180/455 (39%), Positives = 278/455 (61%), Gaps = 14/455 (3%)

Query: 17  IVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA 76
           +V+Q    Q++F++++GCQMN  DS  M  +    GYE V + +DAD+I+LNTC +RE A
Sbjct: 1   MVNQNNDKQKYFLQTFGCQMNERDSETMAGLLEGMGYEPVANAEDADIIILNTCTVRETA 60

Query: 77  AEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAE--GEEILRRSPIVNVVVGPQTYY 134
             KV+  +G ++ LK+ +     D+++ + GC+AQ +   E+I R++P + ++ G    +
Sbjct: 61  ENKVWGRIGELKALKSKK----PDVIIGICGCMAQQKETAEKIRRKAPHIELIFGTHNIH 116

Query: 135 RLPELLERARFGKRVVDTDYSVEDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFC 193
            LPE++ R    ++ +   ++ E      SIV+     RK  V AF++I  GC+ FCT+C
Sbjct: 117 ELPEMINRLVAERKPLLNVWNAEG-----SIVENLPARRKSKVKAFVSIMFGCNNFCTYC 171

Query: 194 VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS 253
           +VPY RG E SR ++ +V E + L + G  E+TLLGQNVN++ GK L  EK  FSDLL  
Sbjct: 172 IVPYVRGRERSRQIADIVREVKSLAEQGYKEVTLLGQNVNSY-GKDLP-EKTDFSDLLEV 229

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
           L+EI G+ R+RY TSHPRD +  LI      + +  + HLPVQSGS+ ILK MNR +T  
Sbjct: 230 LNEIDGIRRIRYMTSHPRDFTSKLIDVIARSEKVCEHFHLPVQSGSNSILKKMNRGYTRE 289

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
            Y +++  IRS  P  +I++D IVGFPGET  DF  TMDL+DK+ Y  AF+F Y+ R GT
Sbjct: 290 YYFELVAEIRSKIPHASITTDIIVGFPGETRQDFENTMDLLDKVRYDSAFTFVYNKRSGT 349

Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSP 433
           P ++M +QV +  K++R++ L +   +  +  N   VG+  EVL E     + K+  R+ 
Sbjct: 350 PAASMTDQVPDEEKSKRIVELIEFQNKISLEKNLCEVGREHEVLAEGLKNSQNKVEARTR 409

Query: 434 WLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
             + V+LN  ++ IG++ +V+I       L GE++
Sbjct: 410 TNKLVLLNGDSNMIGNMYRVKIVKAGPWHLDGEIL 444


>gi|222055271|ref|YP_002537633.1| RNA modification enzyme, MiaB family [Geobacter sp. FRC-32]
 gi|221564560|gb|ACM20532.1| RNA modification enzyme, MiaB family [Geobacter sp. FRC-32]
          Length = 440

 Score =  319 bits (817), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 176/444 (39%), Positives = 271/444 (61%), Gaps = 15/444 (3%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
            +++++GCQMNV DS ++  +  + GY   N    ADLI+LNTC +R +A EKVY+ L +
Sbjct: 7   LYLQTFGCQMNVSDSEKIAGLLKNIGYRPTNDSSLADLIILNTCSVRARAEEKVYNHLVQ 66

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
            + LK  R K    +L+ V GCVAQ EGE +L   P ++ V G    + LPEL+  A  G
Sbjct: 67  YKGLKRKRPK----ILIGVGGCVAQQEGERLLLNIPHLDFVFGTHNLHLLPELVLSAEKG 122

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           +R  +TD+   D    L  VD   N   GV+ F+T+ +GCD FC++C+VPY RG EISR 
Sbjct: 123 ERQAETDFIDNDSRLDLFPVDNSTN---GVSRFVTVMQGCDNFCSYCIVPYVRGREISRR 179

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
            + +++E  +L   GV E+TLLGQNVN++ G   DGE   F  LL  +SEI G+ RLR+T
Sbjct: 180 SADILEEISQLAAKGVKEVTLLGQNVNSY-GLKSDGE-LDFVTLLRQVSEIPGIERLRFT 237

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
           TSHP+D S  LI    ++  L  ++HLP Q+GS+ +L +MNR ++  EY  +I ++++V 
Sbjct: 238 TSHPKDFSRQLIDCFAEMPKLCKHVHLPAQAGSNAVLSAMNRGYSREEYLSLIGQLKTVS 297

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG---SNMLEQVD 383
           P I I+ D IVGFPGET+ DF+ T+ L++++ Y   FSF YS R  T     ++ + Q +
Sbjct: 298 PGIQITGDIIVGFPGETETDFQETLSLLEEVRYTDVFSFIYSKRPETKAAGYTDHISQKE 357

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
           + ++ +RLL +Q+K+    +  N +  G + EVL+E   +  G++ GR    + V + + 
Sbjct: 358 KQMRLDRLLAMQRKI---TLENNRSFEGSVQEVLVEGESRRGGQIYGRISGNRIVNITAD 414

Query: 444 NHNIGDIIKVRITDVKISTLYGEL 467
              +G +++V IT  + ++L GEL
Sbjct: 415 PALVGQMVRVTITRGEQNSLQGEL 438


>gi|121533678|ref|ZP_01665505.1| RNA modification enzyme, MiaB family [Thermosinus carboxydivorans
           Nor1]
 gi|121307669|gb|EAX48584.1| RNA modification enzyme, MiaB family [Thermosinus carboxydivorans
           Nor1]
          Length = 451

 Score =  319 bits (817), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 174/446 (39%), Positives = 273/446 (61%), Gaps = 13/446 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +++ + +YGCQMN  DS R+       GY   + ++ ADLI++NTC +RE A +K+Y  +
Sbjct: 16  RKYHIITYGCQMNENDSERLAGQLRGLGYSSTDQIEQADLILINTCCVRESAEKKIYGKI 75

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           G ++ LK        +LL+ V GC++Q + ++I  ++P V++V+G    ++L +L++   
Sbjct: 76  GELKRLKTV----NPNLLIGVTGCLSQKDRDKIFTKAPHVDLVMGTHNVHQLTDLIKEIS 131

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
             +   D   +V D+ ERL+  D    RK  V+A++ I  GC+ FCT+C+VPY RG E S
Sbjct: 132 QSR---DRVLAVWDQAERLA-PDVPTVRKSQVSAWVPIMYGCNNFCTYCIVPYVRGRERS 187

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT-FSDLLYSLSEIKGLVRL 263
           R L+ ++ E R+L   G  EITLLGQNVN++   G DGE+   F+DLL ++ +++ + R+
Sbjct: 188 RPLADILAEVRQLGTEGFKEITLLGQNVNSY---GKDGEETIDFADLLAAVDKVETIARI 244

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           RY TSHPRDM+  +I        +  + HLPVQSGSD +L+ MNR +T   YR+++++IR
Sbjct: 245 RYMTSHPRDMNAKVIAVIKHGQRICEHFHLPVQSGSDIVLQRMNRGYTTEYYRKLVEKIR 304

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           S  P  +I++D IVGFPGETD+ F  T+D V  I +  A++F YSPR GTP + M +QV 
Sbjct: 305 SEIPHASITTDIIVGFPGETDELFMQTLDFVRSIRFDAAYTFLYSPRSGTPAATMPDQVP 364

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVLNS 442
             +K +RL  L     E  ++ N+A +GQ +EVL+E   K +  K++GR+   + V+ N 
Sbjct: 365 LAIKKQRLQQLMAVQNEISLAINEALIGQTVEVLVEGPSKNDPDKMMGRTRTNKIVLWNR 424

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
               IG +I VR+   +   L GE+ 
Sbjct: 425 GKEQIGQLISVRVLKAQTWLLKGEVA 450


>gi|322806038|emb|CBZ03605.1| tRNA-i(6)A37 methylthiotransferase [Clostridium botulinum H04402
           065]
          Length = 450

 Score =  319 bits (817), Expect = 8e-85,   Method: Compositional matrix adjust.
 Identities = 177/443 (39%), Positives = 268/443 (60%), Gaps = 13/443 (2%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           FF++++GCQMN  DS ++  M   +GY R    +DAD+I+ NTC +RE A  KVY  LG 
Sbjct: 16  FFIETWGCQMNEEDSEKLSGMLKKEGYIRTEEREDADVIIFNTCCVRENAELKVYGNLGI 75

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           ++ LK+    +  +L++ V GC+ Q +G  E I ++ P V++++G    +  P  L   +
Sbjct: 76  LKGLKS----KNPNLIIAVTGCMMQQKGMAETIKKKFPFVDIIIGTHNLHNFPNYLNEVK 131

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
                V     +++K E   I +   +RK  + AF+TI  GC+ FCT+C+VPY RG E S
Sbjct: 132 KKDTSV---LKIQEK-ENSIIENMPIDRKNSMKAFVTIMYGCNNFCTYCIVPYVRGRERS 187

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R+   +  E +KLI  G  EITLLGQNVN++ GK L+    TF++LL  ++ I+GL R+R
Sbjct: 188 RTPENIEAEIKKLISEGYKEITLLGQNVNSY-GKDLEP-NVTFAELLKRVNNIEGLERVR 245

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           + TSHP+D++D +I+A    D L   +HLPVQSGS  ILK MNR +   +Y  ++ +I+ 
Sbjct: 246 FMTSHPKDLTDDVIEAIAKCDKLCEQIHLPVQSGSSEILKKMNRHYDREKYLDVVSKIKK 305

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           + P++A+S+D IVGFPGET+ DF  T+ LV ++ Y  AF+F YS R GTP +   +QV E
Sbjct: 306 LIPNVALSTDIIVGFPGETEKDFEETLSLVKEVEYDSAFTFLYSIRKGTPAAKFEDQVPE 365

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVLNSK 443
           +VK +R   L + L E     N A  G+I EVL+E   K ++ KL+GR+   + V     
Sbjct: 366 DVKHKRFNRLVEVLNEISAKKNKAYEGKIEEVLVEGTSKNDENKLMGRTRTGKLVNFIGD 425

Query: 444 NHNIGDIIKVRITDVKISTLYGE 466
             +IG+++ V+I      +L GE
Sbjct: 426 KDSIGELVNVKIIKANSFSLTGE 448


>gi|110803553|ref|YP_698478.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Clostridium
           perfringens SM101]
 gi|123341843|sp|Q0STS9|MIAB_CLOPS RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|110684054|gb|ABG87424.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Clostridium perfringens
           SM101]
          Length = 447

 Score =  319 bits (817), Expect = 8e-85,   Method: Compositional matrix adjust.
 Identities = 175/446 (39%), Positives = 273/446 (61%), Gaps = 15/446 (3%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           F + +YGCQMN  DS ++  M  SQGYER  + ++A +I+ NTC +RE A  KV+  LG+
Sbjct: 12  FCISTYGCQMNEEDSEKLSGMLKSQGYERTENKEEASIIIFNTCCVRENAENKVFGNLGQ 71

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERA- 143
           ++ LK    K+  +L++ + GC+ Q  G  +++L+  P V+++ G    ++ PE L R  
Sbjct: 72  LKQLK----KKNPNLVIAICGCMMQQVGMADKVLKTFPYVDIIFGTHNAHKFPEYLHRVL 127

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           + G +V +     E   E L I     +RK  V AF+TI  GC+ FCT+C+VPY RG E 
Sbjct: 128 QEGVQVKEILNKEEGIVEGLPI-----DRKSDVKAFVTIMYGCNNFCTYCIVPYVRGRER 182

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR    ++ E  +L+  G  EITLLGQNVN++ GKGL+ E   F+ LL  ++E+KGL R+
Sbjct: 183 SRKSEDIIKEIEELVSKGYKEITLLGQNVNSY-GKGLE-EDIDFAGLLRKVNEVKGLERV 240

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+ TSHP+D+SD +I A  + D L   +HLPVQSGS RILK MNR +    Y  ++ +I+
Sbjct: 241 RFMTSHPKDLSDDVIMAIKECDKLCEQVHLPVQSGSSRILKEMNRHYDREYYLDLVKKIK 300

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           S  PD+ +++D I+GFPGET++DF  T+ L +++GY  AF+F YS R  TP   M  Q+ 
Sbjct: 301 SEIPDVTLTTDIIIGFPGETEEDFLDTLSLCEEVGYDSAFTFIYSRRNHTPADKMENQIP 360

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVLNS 442
           +++K +R   L + + ++ V  N    G+++EVL+E   K ++ KL GR+   + V    
Sbjct: 361 DDIKHDRFNRLVEAINKKVVIKNKEYEGKVVEVLVEGPSKNDETKLTGRTRNGKLVNFAG 420

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
               +G+++ ++I   +  +L GE+V
Sbjct: 421 DEKLVGELVNLKIVRAQPFSLIGEIV 446


>gi|18310075|ref|NP_562009.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Clostridium perfringens
           str. 13]
 gi|110800579|ref|YP_695795.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Clostridium perfringens
           ATCC 13124]
 gi|168207484|ref|ZP_02633489.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Clostridium perfringens E
           str. JGS1987]
 gi|168214970|ref|ZP_02640595.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Clostridium perfringens
           CPE str. F4969]
 gi|168218108|ref|ZP_02643733.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Clostridium perfringens
           NCTC 8239]
 gi|169342621|ref|ZP_02629366.2| tRNA-i(6)A37 thiotransferase enzyme MiaB [Clostridium perfringens C
           str. JGS1495]
 gi|182626330|ref|ZP_02954085.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Clostridium perfringens D
           str. JGS1721]
 gi|81767470|sp|Q8XLE9|MIAB_CLOPE RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|123049876|sp|Q0TRE5|MIAB_CLOP1 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|18144754|dbj|BAB80799.1| conserved hypothetical protein [Clostridium perfringens str. 13]
 gi|110675226|gb|ABG84213.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Clostridium perfringens
           ATCC 13124]
 gi|169299263|gb|EDS81332.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Clostridium perfringens C
           str. JGS1495]
 gi|170661180|gb|EDT13863.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Clostridium perfringens E
           str. JGS1987]
 gi|170713591|gb|EDT25773.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Clostridium perfringens
           CPE str. F4969]
 gi|177908349|gb|EDT70894.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Clostridium perfringens D
           str. JGS1721]
 gi|182379874|gb|EDT77353.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Clostridium perfringens
           NCTC 8239]
          Length = 447

 Score =  319 bits (817), Expect = 8e-85,   Method: Compositional matrix adjust.
 Identities = 175/446 (39%), Positives = 273/446 (61%), Gaps = 15/446 (3%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           F + +YGCQMN  DS ++  M  SQGYER  + ++A +I+ NTC +RE A  KV+  LG+
Sbjct: 12  FCISTYGCQMNEEDSEKLSGMLKSQGYERTENKEEASIIIFNTCCVRENAENKVFGNLGQ 71

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERA- 143
           ++ LK    K+  +L++ + GC+ Q  G  +++L+  P V+++ G    ++ PE L R  
Sbjct: 72  LKQLK----KKNPNLVIAICGCMMQQVGMADKVLKTFPYVDIIFGTHNAHKFPEYLHRVL 127

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           + G +V +     E   E L I     +RK  V AF+TI  GC+ FCT+C+VPY RG E 
Sbjct: 128 QEGVQVKEILNKEEGIVEGLPI-----DRKSDVKAFVTIMYGCNNFCTYCIVPYVRGRER 182

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR    ++ E  +L+  G  EITLLGQNVN++ GKGL+ E   F+ LL  ++E+KGL R+
Sbjct: 183 SRKSEDIIKEIEELVSQGYKEITLLGQNVNSY-GKGLE-EDIDFAGLLRKVNEVKGLERV 240

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+ TSHP+D+SD +I A  + D L   +HLPVQSGS RILK MNR +    Y  ++ +I+
Sbjct: 241 RFMTSHPKDLSDDVIMAIKECDKLCEQVHLPVQSGSSRILKEMNRHYDREYYLDLVKKIK 300

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           S  PD+ +++D I+GFPGET++DF  T+ L +++GY  AF+F YS R  TP   M  Q+ 
Sbjct: 301 SEIPDVTLTTDIIIGFPGETEEDFLDTLSLCEEVGYDSAFTFIYSRRNHTPADKMENQIP 360

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVLNS 442
           +++K +R   L + + ++ V  N    G+++EVL+E   K ++ KL GR+   + V    
Sbjct: 361 DDIKHDRFNRLVEAINKKVVIKNKEYEGKVVEVLVEGPSKNDETKLTGRTRNGKLVNFAG 420

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
               +G+++ ++I   +  +L GE+V
Sbjct: 421 DEKLVGELVNLKIVRAQPFSLIGEIV 446


>gi|170755938|ref|YP_001781349.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Clostridium botulinum B1
           str. Okra]
 gi|229890487|sp|B1IM69|MIAB_CLOBK RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|169121150|gb|ACA44986.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Clostridium botulinum B1
           str. Okra]
          Length = 450

 Score =  318 bits (816), Expect = 8e-85,   Method: Compositional matrix adjust.
 Identities = 178/444 (40%), Positives = 267/444 (60%), Gaps = 15/444 (3%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           FF++++GCQMN  DS ++  M   +GY R    ++AD+I+ NTC +RE A  KVY  LG 
Sbjct: 16  FFIETWGCQMNEEDSEKLSGMLKKEGYIRTEERENADVIIFNTCCVRENAELKVYGNLGI 75

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           ++ LK+    +  +L++ V GC+ Q +G  E I ++ P V++++G    +  P  L   +
Sbjct: 76  LKGLKS----KNPNLIIAVTGCMMQQKGMAETIKKKFPFVDIIIGTHNLHNFPNYLNEVK 131

Query: 145 FGKRVVDTDYSVEDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
                V      ED     SI++    +RK  + AF+TI  GC+ FCT+C+VPY RG E 
Sbjct: 132 KKDTSVLKIQEKED-----SIIENMPIDRKNSMKAFVTIMYGCNNFCTYCIVPYVRGRER 186

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR+   + DE +KLI  G  EITLLGQNVN++ GK L+  K TF++LL  ++ I GL R+
Sbjct: 187 SRTPENIEDEIKKLISEGYKEITLLGQNVNSY-GKDLEP-KVTFAELLERVNTIDGLERV 244

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+ TSHP+D++D +I+A    D L   +HLPVQSGS  ILK MNR +   +Y  ++ +I+
Sbjct: 245 RFMTSHPKDLTDDVIEAIAKCDKLCEQIHLPVQSGSSEILKKMNRHYDREKYLDVVSKIK 304

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
            + P++A+S+D IVGFPGET+ DF  T+ LV ++ Y  AF+F YS R GTP +   +QV 
Sbjct: 305 KLIPNVALSTDIIVGFPGETEKDFEETLSLVKEVEYDSAFTFLYSIRKGTPAAKFEDQVP 364

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVLNS 442
           E+VK +R   L + + E     N A  G+I EVL+E   K ++ KL+GR+   + V    
Sbjct: 365 EDVKHKRFNRLVEVVNEISAKKNKAYEGKIEEVLVEGTSKNDENKLMGRTRTGKLVNFIG 424

Query: 443 KNHNIGDIIKVRITDVKISTLYGE 466
              +IG ++ V+I      +L GE
Sbjct: 425 DKDSIGKLVNVKIIKANSFSLTGE 448


>gi|329923527|ref|ZP_08279002.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Paenibacillus sp. HGF5]
 gi|328941235|gb|EGG37532.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Paenibacillus sp. HGF5]
          Length = 519

 Score =  318 bits (816), Expect = 9e-85,   Method: Compositional matrix adjust.
 Identities = 176/447 (39%), Positives = 263/447 (58%), Gaps = 14/447 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + + V +YGCQMN +DS  ++ +    GY        AD+I+LNTC IRE A +KV+  L
Sbjct: 74  KHYIVYTYGCQMNEHDSETIKGLLELMGYRATEDRKQADIILLNTCAIRENAEDKVFGEL 133

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G +++LK     E  D+L+ V GC++Q E     IL++   V+++ G    +RLP L++ 
Sbjct: 134 GHLKHLKT----EKPDMLLGVCGCMSQEESVVNRILQKHGFVDLIFGTHNVHRLPHLIQE 189

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           A F K +V   +S E       IV+    ++ G+  ++ I  GCDKFCT+C+VPYTRG E
Sbjct: 190 ALFSKEMVVEVWSKEG-----DIVENLPKKREGLRGWVNIMYGCDKFCTYCIVPYTRGKE 244

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR    V+ E R+L   G  EITLLGQNVNA+ GK  +  +  F DL+  + +I  + R
Sbjct: 245 RSRRPEDVIAEVRELARQGYKEITLLGQNVNAY-GKDFEDIQYRFGDLMDDIHKID-IPR 302

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHPRD  D LI+       L+ ++HLPVQSGS ++LK M+R++T   Y ++  +I
Sbjct: 303 VRFTTSHPRDFDDHLIEVLAKGGNLVEHIHLPVQSGSSQVLKKMSRKYTRETYLELAHKI 362

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           +   P++A ++D IVGFPGETD+ F  T+ LV ++GY  A++F YSPR GTP + M + V
Sbjct: 363 KKAIPNVAFTTDIIVGFPGETDEQFEETLSLVREVGYDSAYTFIYSPREGTPAAVMEDNV 422

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GRSPWLQSVVLN 441
              VK+ERL  L   + E     ND  +G  +EVL+E   K    ++ GR+   + V   
Sbjct: 423 PMEVKSERLQRLNAAINEYSRKSNDRLLGSTVEVLVEGVSKNNDSMLSGRTRTNKLVHFE 482

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                +G  + VRITD K   + G+++
Sbjct: 483 GSTDLVGSFVNVRITDTKTWYIKGDMI 509


>gi|196247551|ref|ZP_03146253.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Geobacillus sp. G11MC16]
 gi|229890686|sp|A4IMH7|MIAB_GEOTN RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|196212335|gb|EDY07092.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Geobacillus sp. G11MC16]
          Length = 523

 Score =  318 bits (816), Expect = 9e-85,   Method: Compositional matrix adjust.
 Identities = 182/448 (40%), Positives = 264/448 (58%), Gaps = 15/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++F++++YGCQMN +D+  M  +F + GYE  +  +DA++I+LNTC IRE A  KV+  L
Sbjct: 80  RKFYIRTYGCQMNEHDTEVMAGIFMALGYEPTDRPEDANVILLNTCAIRENAENKVFGEL 139

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G ++ LK +      DLL+ V GC++Q E    +IL++   V+++ G    +RLP +L  
Sbjct: 140 GYLKPLKTT----NPDLLLGVCGCMSQEEAVVNKILKQYQYVDLIFGTHNIHRLPYILHE 195

Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           A   K +V   +S E D  E L  V     RK  + A++ I  GCDKFCT+C+VPYTRG 
Sbjct: 196 AYMSKEMVVEVWSKEGDVVENLPKV-----RKGNIKAWVNIMYGCDKFCTYCIVPYTRGK 250

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR    ++ E R+L   G  EITLLGQNVNA+ GK  +  +    DL+  L +I  + 
Sbjct: 251 ERSRRPEDIIQEVRQLAAQGYKEITLLGQNVNAY-GKDFNDIQYGLGDLMDELRKI-DIA 308

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHPRD  D LI+       L+ ++HLPVQSGS  ILK M R++T  EY +++ +
Sbjct: 309 RIRFTTSHPRDFDDRLIEVLAKRGNLVEHIHLPVQSGSTEILKMMGRKYTREEYLELVRK 368

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I++  PD+A+++D IVGFP ETD+ F  T+ L  ++ +  A++F YSPR GTP + M + 
Sbjct: 369 IKAAIPDVALTTDIIVGFPNETDEQFEETLSLYREVEFDSAYTFIYSPREGTPAAKMNDN 428

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440
           V   VK ERL  L   ++E          GQ++EVL+E   K     L G +   + V  
Sbjct: 429 VPMEVKKERLQRLNALVQEIAAKKMKQYEGQVVEVLVEGESKTNPDVLAGYTRKNKLVHF 488

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 IG ++ VRIT  K  TL GEL 
Sbjct: 489 VGPKSLIGQLVNVRITQAKTWTLTGELA 516


>gi|17228807|ref|NP_485355.1| hypothetical protein alr1312 [Nostoc sp. PCC 7120]
 gi|81772425|sp|Q8YXA3|MIAB_ANASP RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|17130659|dbj|BAB73269.1| alr1312 [Nostoc sp. PCC 7120]
          Length = 454

 Score =  318 bits (816), Expect = 9e-85,   Method: Compositional matrix adjust.
 Identities = 183/454 (40%), Positives = 277/454 (61%), Gaps = 23/454 (5%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +R+ + ++GCQMN  DS RM  +    G++     ++ADLI+ NTC IR+ A +KVYS+L
Sbjct: 6   RRYHITTFGCQMNKADSERMAGILEDMGFKFSEDPNNADLILYNTCTIRDNAEQKVYSYL 65

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR    +  R  E  DL +VVAGCVAQ EGE +LRR P +++V+GPQ   RL +LLE   
Sbjct: 66  GR----QAKRKHEQPDLTLVVAGCVAQQEGEALLRRVPELDLVMGPQHANRLKDLLESVF 121

Query: 145 FGKRVVDTD--YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            G +VV T+  + +ED  +          R   VTA++ +  GC++ CT+CVVP  RG+E
Sbjct: 122 AGNQVVATEAVHIMEDITQ--------ARRDSTVTAWVNVIYGCNERCTYCVVPNVRGVE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC------TFSDLLYSLSE 256
            SR+ + V  E  +L   G  EITLLGQN++A+ G+ L G         TF+DLLY + +
Sbjct: 174 QSRTPAAVRAEMEELGRQGYKEITLLGQNIDAY-GRDLPGATPEGRHLHTFTDLLYYVHD 232

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           + G+ R+R+ TSHPR  ++ LIKA  +L  +  + H+P QSG +++LK+M R +T  +YR
Sbjct: 233 VPGVERIRFATSHPRYFTERLIKACAELPKVCEHFHIPFQSGDNQLLKAMARGYTQEKYR 292

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
           +IID IR   PD +IS+D IVGFPGET++ F  T+ LVD IG+ Q  +  YSPR GTP +
Sbjct: 293 RIIDTIRRYMPDASISADAIVGFPGETEEQFENTLKLVDDIGFDQLNTAAYSPRPGTPAA 352

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWL 435
               Q+ E VK++RL  L   +  +    +   +G+I EVL+E+   K++ +++GR+   
Sbjct: 353 LWENQLSEEVKSDRLQRLNHLVNVKAAERSQRYMGRIEEVLVEEQNPKDQTQVMGRTGGN 412

Query: 436 QSVVLNSKNHNI-GDIIKVRITDVKISTLYGELV 468
           +        H + G ++ V+I +V+  +L GE +
Sbjct: 413 RLTFFKGDIHELKGQLVMVKINEVRAFSLTGEPI 446


>gi|39997296|ref|NP_953247.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Geobacter
           sulfurreducens PCA]
 gi|81701892|sp|Q74B44|MIAB_GEOSL RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|39984186|gb|AAR35574.1| tRNA-i(6)A37 modification enzyme MiaB [Geobacter sulfurreducens
           PCA]
 gi|298506234|gb|ADI84957.1| tRNA-i(6)A37 modification enzyme MiaB [Geobacter sulfurreducens
           KN400]
          Length = 446

 Score =  318 bits (816), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 180/449 (40%), Positives = 278/449 (61%), Gaps = 21/449 (4%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
            +V+++GCQMNV DS ++  +   +GY   +  + ADL++LNTC +R KA +KVY  LGR
Sbjct: 7   LYVETFGCQMNVNDSEKIATLLKDEGYLPTDDPERADLVILNTCSVRAKAEQKVYGHLGR 66

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
            + +++   K+G   L+ V GCVAQ EGE +L++ P +++V G    + LPE++  A  G
Sbjct: 67  FKGVRSR--KKG--FLLGVGGCVAQQEGERLLQKVPWLDLVFGTHNLHLLPEIVRAAERG 122

Query: 147 KRVVDTDYSVEDKFERLSIV--DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
           +R  +  +   D   RL +    GG     GVT F+T+ +GCD FC++C+VPY RG EIS
Sbjct: 123 ERRAEVGFI--DNETRLDLFPETGGEG---GVTRFVTVMQGCDNFCSYCIVPYVRGREIS 177

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R  S ++DE RK +  GV E+TLLGQNVN++ G   +GE  +F+ L+  ++E++GL R+R
Sbjct: 178 RRSSDIIDEVRKSVAEGVKEVTLLGQNVNSY-GLKTEGE-LSFAGLIRRIAEVEGLERIR 235

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +TTSHP+D+S  LI    ++  L  ++HLP QSGSD +L  MNR +T   Y + ++ +R+
Sbjct: 236 FTTSHPKDISPELIACFAEVPKLCGHIHLPAQSGSDAVLARMNRGYTRAGYLEKVEALRA 295

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV-- 382
            RP I  + D IVGFPGET++DF+AT+ L++++ YA  FSF YSPR  T  + + + V  
Sbjct: 296 ARPGIQFTGDMIVGFPGETEEDFQATISLMEEVRYADLFSFIYSPRPETAAAGIRDTVSR 355

Query: 383 -DENVKAERLLCLQKKL-REQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440
            ++  + +RL  LQ+++ RE+ +SF    VG    VL+E   K   +L GR    + V  
Sbjct: 356 KEKQSRLDRLQTLQQQMKRERNISF----VGTRQLVLVEGVSKRGDQLYGRIDGNRIVNF 411

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELVV 469
            +    IG + +V IT    ++L GE+V 
Sbjct: 412 AADQSLIGTMAEVTITQDYQNSLLGEIVT 440


>gi|253573611|ref|ZP_04850954.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Paenibacillus sp. oral
           taxon 786 str. D14]
 gi|251847139|gb|EES75144.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Paenibacillus sp. oral
           taxon 786 str. D14]
          Length = 532

 Score =  318 bits (815), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 177/449 (39%), Positives = 268/449 (59%), Gaps = 14/449 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           V + + V ++GCQMN +D+  ++ +    GY        AD+I+LNTC IRE A +KV+ 
Sbjct: 88  VGKHYIVYTFGCQMNEHDTETIKGLLEQMGYRATEDRKVADIILLNTCAIRENAEDKVFG 147

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELL 140
            LG +++LK     E  DLL+ V GC++Q EG  + IL++   V+++ G    +RLP L+
Sbjct: 148 ELGHLKSLKT----EKPDLLLGVCGCMSQEEGVVKRILQKHSFVDMIFGTHNIHRLPYLI 203

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           + A F K +V   +S E       I++    ++ G+ A++ I  GCDKFCT+C+VP+TRG
Sbjct: 204 QEALFSKEMVVEVWSKEG-----DIIENLPKKREGMRAWVNIMYGCDKFCTYCIVPFTRG 258

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E SR    V+ E R+L   G  EITLLGQNVNA+ GK       TF++L+  + +I  +
Sbjct: 259 KERSRRPEDVIAEVRELARQGYKEITLLGQNVNAY-GKDFTDINYTFANLMDDIRQID-I 316

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+TTSHPRD  D LI        L+ ++HLPVQSGS  +LK M+R++T   Y +++ 
Sbjct: 317 PRVRFTTSHPRDFDDALIDVLAKGGNLVEHIHLPVQSGSSEVLKKMSRKYTREHYLELVR 376

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           +I++  P++ +++D IVGFPGET++ F  T+ LV ++GY  A++F YSPR GTP + M +
Sbjct: 377 KIKAKIPNVVLTTDIIVGFPGETEEQFEETLSLVREVGYDSAYTFIYSPREGTPAAVMED 436

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GRSPWLQSVV 439
            V   VK  RL+ L   L E   + N+A  GQI+EVL+E   K    ++ GR+   + V 
Sbjct: 437 TVPMEVKKARLMKLNDTLNEFSRNSNEALRGQIVEVLVEGESKNNAHMLSGRTRTNKLVH 496

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG  ++V ITD     + G+LV
Sbjct: 497 FEGGTELIGTFVQVEITDPMTWYIKGKLV 525


>gi|269122389|ref|YP_003310566.1| RNA modification enzyme, MiaB family [Sebaldella termitidis ATCC
           33386]
 gi|268616267|gb|ACZ10635.1| RNA modification enzyme, MiaB family [Sebaldella termitidis ATCC
           33386]
          Length = 445

 Score =  318 bits (815), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 175/440 (39%), Positives = 268/440 (60%), Gaps = 12/440 (2%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           +YGCQMNV +S +M+ M  S GY+ V+ +  +DL++LNTC +RE AA KVY  LG ++ L
Sbjct: 16  TYGCQMNVNESAKMKKMLQSIGYKIVDDIKISDLVLLNTCTVREGAAVKVYGKLGELKKL 75

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
           K  R     ++++ V GC+AQ   EE ++R+P V++V+G Q   +LP+++E+ + G   V
Sbjct: 76  KEKR----NNMIIGVTGCLAQEVREEFIKRTPFVDLVIGNQNIAKLPDIIEKIQKG--TV 129

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
           D    VED+ E    VD  +     + A ++I  GC+ +CTFC+VPY RG+E S  + ++
Sbjct: 130 DHIVMVEDEDELPKRVDADFGDD--IVASVSITYGCNNYCTFCIVPYVRGMERSVPMREI 187

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYTTSH 269
           +D+ ++  D G  EI  LGQNVN++    ++ GE   F+ LL   + I+G   L+Y + H
Sbjct: 188 LDDVKQYADKGYKEILFLGQNVNSYGSDRIEMGE--DFAGLLTKAANIEGDFWLKYISPH 245

Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329
           P+D +D +IKA  +   +   LHLP+QSGS +IL +MNR +T  E+ ++  +I+   PDI
Sbjct: 246 PKDFTDSVIKAIAENPKVARMLHLPLQSGSTKILGAMNRGYTKEEFIELALKIKKEIPDI 305

Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAE 389
            I++D IVGFPGETD+DF+ T+D+V+++G+  AF F YS R GTP + + EQV E VK E
Sbjct: 306 GITTDIIVGFPGETDEDFQDTLDVVEQVGFENAFMFMYSKRSGTPAAVLEEQVPEQVKKE 365

Query: 390 RLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSPWLQSVVLNSKNHNIG 448
           RL  L +    +    +    GQ ++VL+E    K    L GR+   + V+        G
Sbjct: 366 RLQQLMRLQNARAKEESKKYYGQTLKVLVEGPSSKNPDMLTGRTSTHKIVLFKGDEELSG 425

Query: 449 DIIKVRITDVKISTLYGELV 468
             + V+I + K  TLYGELV
Sbjct: 426 KFVNVKIYETKTWTLYGELV 445


>gi|295399898|ref|ZP_06809879.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|312111583|ref|YP_003989899.1| RNA modification enzyme, MiaB family [Geobacillus sp. Y4.1MC1]
 gi|294978301|gb|EFG53898.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|311216684|gb|ADP75288.1| RNA modification enzyme, MiaB family [Geobacillus sp. Y4.1MC1]
          Length = 523

 Score =  318 bits (815), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 179/448 (39%), Positives = 264/448 (58%), Gaps = 15/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++F++++YGCQMN +D+  M  +F   GYE  +  +DA++I+LNTC IRE A  KV+  +
Sbjct: 80  RKFYIRTYGCQMNEHDTEVMAGIFMELGYEPTDRPEDANVILLNTCAIRENAENKVFGEI 139

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G ++ LK    ++  DLL+ V GC++Q E    +IL++   V+++ G    +RLP +L  
Sbjct: 140 GHLKQLK----QDNPDLLLGVCGCMSQEESVVNKILKQYQYVDMIFGTHNIHRLPHILHE 195

Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           A   K +V   +S E D  E L        RK  + A++ I  GCDKFCT+C+VPYTRG 
Sbjct: 196 AYMSKEMVVEVWSKEGDVIENLPKA-----RKGNIKAWVNIMYGCDKFCTYCIVPYTRGK 250

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR    ++ E R L   G  E+TLLGQNVNA+ GK     K    DL+  L +I  + 
Sbjct: 251 ERSRRPEDIIQEVRHLAAQGYKEVTLLGQNVNAY-GKDFTDMKYGLGDLMDELRKI-DIA 308

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHPRD  D LI+       L+ ++HLPVQSGS  ILK M R++T  EY +++ +
Sbjct: 309 RIRFTTSHPRDFDDRLIEVLAKRGNLVEHIHLPVQSGSTEILKLMGRKYTREEYLELVRK 368

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I++  PD+A+++D IVGFP ET++ F  T+ L  ++ +  A++F YSPR GTP + M++ 
Sbjct: 369 IKAAIPDVALTTDIIVGFPNETEEQFEETLSLYREVEFDSAYTFIYSPREGTPAAKMVDN 428

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440
           V   VK ERL  L   + E          G+++EVL+E   K     L G +   + V  
Sbjct: 429 VPMEVKKERLHRLNALVNEISARKMKEYEGKVVEVLVEGESKNNPDVLAGYTRKNKLVNF 488

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 IG ++KVRIT+ K  TL GE+V
Sbjct: 489 IGPKSAIGKLVKVRITEAKTWTLNGEMV 516


>gi|237795210|ref|YP_002862762.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Clostridium botulinum Ba4
           str. 657]
 gi|229262035|gb|ACQ53068.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Clostridium botulinum Ba4
           str. 657]
          Length = 450

 Score =  318 bits (815), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 178/446 (39%), Positives = 269/446 (60%), Gaps = 17/446 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +FF++++GCQMN  DS ++  M   +GY R    ++AD+I+ NTC +RE A  KVY  LG
Sbjct: 15  KFFIETWGCQMNEEDSEKLSGMLKREGYVRTEERENADVIIFNTCCVRENAELKVYGNLG 74

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERA 143
            ++ LK+    +  +L++ V GC+ Q +G  E I ++ P V++++G    +        A
Sbjct: 75  ILKGLKS----KNPNLIIAVTGCMMQQKGMAETIKKKFPFVDIIIGTHNLHNF------A 124

Query: 144 RFGKRVVDTDYSVEDKFERLSIV--DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
            +   V   D SV    E+  I+  +   +RK  + AF+TI  GC+ FCT+C+VPY RG 
Sbjct: 125 NYLNEVKKKDTSVLKIQEKEDIIIENMPIDRKNSMKAFVTIMYGCNNFCTYCIVPYVRGR 184

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR+   +  E +KLI  G  EITLLGQNVN++ GK L+  K TF++LL  ++ I+GL 
Sbjct: 185 ERSRTPENIEAEIKKLISEGYKEITLLGQNVNSY-GKDLE-PKITFAELLKRVNNIEGLE 242

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+ TSHP+D++D +I+A    D L   +HLPVQSGS  ILK MNR +   +Y  ++ +
Sbjct: 243 RVRFMTSHPKDLTDDVIEAIAKCDKLCEQIHLPVQSGSSEILKKMNRHYDREKYLDVVSK 302

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I+ + P++A+S+D IVGFPGET+ DF  T+ LV ++ Y  AF+F YS R GTP +   +Q
Sbjct: 303 IKKLIPNVALSTDIIVGFPGETEKDFEETLSLVKEVEYDSAFTFLYSIRKGTPAAKFEDQ 362

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVL 440
           V E+VK  R   L + + E     N A  G+I EVL+E   K ++ KL+GR+   + V  
Sbjct: 363 VPEDVKHNRFNRLVEVVNEISAKKNKAYEGKIEEVLVEGTSKNDENKLMGRTRAGKLVNF 422

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGE 466
                +IG ++ V+IT     +L GE
Sbjct: 423 IGNKESIGKLVNVKITKANSFSLTGE 448


>gi|148241703|ref|YP_001226860.1| 2-methylthioadenine synthetase [Synechococcus sp. RCC307]
 gi|229891031|sp|A5GRJ8|MIAB_SYNR3 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|147850013|emb|CAK27507.1| 2-methylthioadenine synthetase [Synechococcus sp. RCC307]
          Length = 453

 Score =  318 bits (815), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 181/448 (40%), Positives = 274/448 (61%), Gaps = 22/448 (4%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           +++ ++GCQMN  DS RM  +  S GY   +  D ADL++ NTC IR+ A +KVYS+LGR
Sbjct: 9   YWITTFGCQMNKADSERMAGILESMGYCAGSGEDQADLVLYNTCTIRDNAEQKVYSYLGR 68

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
               +  R ++   L +VVAGCVAQ EGE +LRR P +++V+GPQ   RL  LL +   G
Sbjct: 69  ----QARRKRDNPALTLVVAGCVAQQEGESLLRRVPELDLVMGPQHANRLDTLLSQVEAG 124

Query: 147 KRVVDTD--YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
           ++VV TD  + +ED      I      R   + A++ +  GC++ CT+CVVP  RG E S
Sbjct: 125 QQVVATDDHHILED------ITTA--RRDSSLCAWVNVIYGCNERCTYCVVPSVRGQEQS 176

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG------EKCTFSDLLYSLSEIK 258
           R    +  E   L  +G  EITLLGQN++A+ G+ L G       + T +DLL+ + ++K
Sbjct: 177 RLPQAIRLEMEGLAASGYKEITLLGQNIDAY-GRDLPGITPEGRRQNTLTDLLHHVHDVK 235

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           G+ R+R+ TSHPR  ++ LI+A  +L  +  + H+P QSG D +LK+M R +T   YR+I
Sbjct: 236 GIERIRFATSHPRYFTERLIEACAELPKVCEHFHVPFQSGDDELLKAMARGYTTARYRRI 295

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           +++IR + PD AIS+D IVGFPGETD  FR T++LVD+IG+    +  YSPR  TP ++ 
Sbjct: 296 VEQIRKLMPDAAISADAIVGFPGETDAQFRRTLELVDEIGFDLLNTAAYSPRPNTPAADW 355

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQS 437
            +QV+E+VK ERL  L   +  +  + +   +G++ EVL E  + K+  +L+GR+   + 
Sbjct: 356 PDQVEEHVKVERLKELNALVERKAKACSQRYLGRVEEVLAEGINPKDNTQLMGRTRTNRL 415

Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYG 465
               + +H +GD + VRI  V+  +L G
Sbjct: 416 TFFPAGSHRVGDTVPVRIEQVRAFSLSG 443


>gi|138894823|ref|YP_001125276.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Geobacillus
           thermodenitrificans NG80-2]
 gi|134266336|gb|ABO66531.1| tRNA 2-methylthioadenosine synthase [Geobacillus
           thermodenitrificans NG80-2]
          Length = 580

 Score =  318 bits (815), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 182/448 (40%), Positives = 264/448 (58%), Gaps = 15/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++F++++YGCQMN +D+  M  +F + GYE  +  +DA++I+LNTC IRE A  KV+  L
Sbjct: 137 RKFYIRTYGCQMNEHDTEVMAGIFMALGYEPTDRPEDANVILLNTCAIRENAENKVFGEL 196

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G ++ LK +      DLL+ V GC++Q E    +IL++   V+++ G    +RLP +L  
Sbjct: 197 GYLKPLKTT----NPDLLLGVCGCMSQEEAVVNKILKQYQYVDLIFGTHNIHRLPYILHE 252

Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           A   K +V   +S E D  E L  V     RK  + A++ I  GCDKFCT+C+VPYTRG 
Sbjct: 253 AYMSKEMVVEVWSKEGDVVENLPKV-----RKGNIKAWVNIMYGCDKFCTYCIVPYTRGK 307

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR    ++ E R+L   G  EITLLGQNVNA+ GK  +  +    DL+  L +I  + 
Sbjct: 308 ERSRRPEDIIQEVRQLAAQGYKEITLLGQNVNAY-GKDFNDIQYGLGDLMDELRKI-DIA 365

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHPRD  D LI+       L+ ++HLPVQSGS  ILK M R++T  EY +++ +
Sbjct: 366 RIRFTTSHPRDFDDRLIEVLAKRGNLVEHIHLPVQSGSTEILKMMGRKYTREEYLELVRK 425

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I++  PD+A+++D IVGFP ETD+ F  T+ L  ++ +  A++F YSPR GTP + M + 
Sbjct: 426 IKAAIPDVALTTDIIVGFPNETDEQFEETLSLYREVEFDSAYTFIYSPREGTPAAKMNDN 485

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440
           V   VK ERL  L   ++E          GQ++EVL+E   K     L G +   + V  
Sbjct: 486 VPMEVKKERLQRLNALVQEIAAKKMKQYEGQVVEVLVEGESKTNPDVLAGYTRKNKLVHF 545

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 IG ++ VRIT  K  TL GEL 
Sbjct: 546 VGPKSLIGQLVNVRITQAKTWTLTGELA 573


>gi|194014848|ref|ZP_03053465.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacillus pumilus ATCC
           7061]
 gi|194013874|gb|EDW23439.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacillus pumilus ATCC
           7061]
          Length = 508

 Score =  318 bits (814), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 177/448 (39%), Positives = 264/448 (58%), Gaps = 15/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++F++++YGCQMN +D+  M  +F + GYE  NS +DA++I+LNTC IRE A  KV+  L
Sbjct: 65  RKFYIRTYGCQMNEHDTEVMAGIFMALGYEPTNSTEDANVILLNTCAIRENAENKVFGEL 124

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G ++ LK    +E  DL++ V GC++Q E   + IL++ P V+++ G    +RLPELL  
Sbjct: 125 GHLKALK----REKPDLILGVCGCMSQEESVVKRILKKHPFVDLIFGTHNIHRLPELLSE 180

Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
               K +V   +S E D  E L        R+  +  ++ I  GCDKFCT+C+VPYTRG 
Sbjct: 181 CYLSKEMVIEVWSKEGDVIENLPRA-----RQGKIKGWVNIMYGCDKFCTYCIVPYTRGK 235

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR   +++ E R+L   G  EITLLGQNVNA+ GK  +  +     L+  L +I  + 
Sbjct: 236 ERSRRPDEIIQEVRRLAAEGYKEITLLGQNVNAY-GKDFEDMEYGLGHLMDELRKID-IP 293

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHPRD  D LI+       L+ ++HLPVQSGS  +LK M R++    Y  ++ +
Sbjct: 294 RIRFTTSHPRDFDDHLIEVLAKGGNLLDHIHLPVQSGSSSVLKLMARKYDRERYLDLVRK 353

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I+   P+ ++++D IVGFP ETD+ F  T+ L  ++ +  A++F YSPR GTP + M + 
Sbjct: 354 IKEAMPNASLTTDIIVGFPNETDEQFEETLSLYREVEFDAAYTFIYSPREGTPAAKMQDN 413

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440
           V  +VK ERL  L   + E          GQ +EVL+E   K   + L G +   + V  
Sbjct: 414 VPMHVKKERLQRLNALVNEISAKKMKEYEGQTVEVLVEGESKNNPEILAGYTSKSKLVNF 473

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
            +    IG+I+KV+IT  K  +L GE+V
Sbjct: 474 KAPKEAIGNIVKVKITQAKTWSLDGEMV 501


>gi|75909246|ref|YP_323542.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Anabaena
           variabilis ATCC 29413]
 gi|123758760|sp|Q3M8N9|MIAB_ANAVT RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|75702971|gb|ABA22647.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Anabaena variabilis ATCC
           29413]
          Length = 454

 Score =  318 bits (814), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 183/454 (40%), Positives = 275/454 (60%), Gaps = 23/454 (5%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +R+ + ++GCQMN  DS RM  +    G+E     ++AD+I+ NTC IR+ A +KVYS+L
Sbjct: 6   RRYHITTFGCQMNKADSERMAGILEDMGFEFSEDPNNADVILYNTCTIRDNAEQKVYSYL 65

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR    +  R  E  DL +VVAGCVAQ EGE +LRR P +++V+GPQ   RL +LLE   
Sbjct: 66  GR----QAKRKHEQPDLTLVVAGCVAQQEGEALLRRVPELDLVMGPQHANRLKDLLESVF 121

Query: 145 FGKRVVDTD--YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            G +VV T+  + +ED  +          R   VTA++ +  GC++ CT+CVVP  RG+E
Sbjct: 122 AGNQVVATEAVHIMEDITQ--------ARRDSTVTAWVNVIYGCNERCTYCVVPNVRGVE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC------TFSDLLYSLSE 256
            SR+   V  E  +L   G  EITLLGQN++A+ G+ L G         TF+DLLY + +
Sbjct: 174 QSRTPEAVRAEMEELGRQGYKEITLLGQNIDAY-GRDLPGATPEGRHLHTFTDLLYYVHD 232

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           + G+ R+R+ TSHPR  ++ LIKA  +L  +  + H+P QSG +++LK+M R +T  +YR
Sbjct: 233 VPGIERIRFATSHPRYFTERLIKACAELPKVCEHFHIPFQSGDNQLLKAMARGYTQEKYR 292

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
           +IID IR   PD +IS+D IVGFPGET++ F  T+ LVD IG+ Q  +  YSPR GTP +
Sbjct: 293 RIIDTIRRYMPDASISADAIVGFPGETEEQFENTLKLVDDIGFDQLNTAAYSPRPGTPAA 352

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWL 435
               Q+ E  K++RL  L   +  +    +   +G+I EVL+E+   K++ +++GR+   
Sbjct: 353 LWENQLSEETKSDRLQRLNHLVNVKAAERSQRYMGRIEEVLVEEQNPKDQTQVMGRTRGN 412

Query: 436 QSVVLNSK-NHNIGDIIKVRITDVKISTLYGELV 468
           +        N   G ++KV+I +V+  +L GE +
Sbjct: 413 RLTFFKGDINELKGQLVKVKINEVRAFSLTGEPI 446


>gi|218780253|ref|YP_002431571.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Desulfatibacillum
           alkenivorans AK-01]
 gi|218761637|gb|ACL04103.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Desulfatibacillum
           alkenivorans AK-01]
          Length = 461

 Score =  318 bits (814), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 172/399 (43%), Positives = 246/399 (61%), Gaps = 12/399 (3%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P++ ++K+ GCQMNVYDS  M  +    GYE      DAD ++LNTC IR KA +KV+S+
Sbjct: 3   PKKLYIKTMGCQMNVYDSEAMARVLAPMGYELTAHKKDADCLLLNTCAIRAKAEQKVFSY 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR+  LK +      DLL+ V GCVAQ E +++  R+P V+ V GP    RLPE++ +A
Sbjct: 63  LGRLTGLKGNNP----DLLIGVGGCVAQQEAKKVFDRAPHVDFVFGPHAINRLPEIVAQA 118

Query: 144 RFGKR-VVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
             GKR V  T++   D FE +    +D     + GV+AF+TI  GCD +CT+CVVP+ RG
Sbjct: 119 EQGKRHVAATEFL--DFFEEIKQPHLDKAGPEESGVSAFVTIMSGCDNYCTYCVVPHVRG 176

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR    ++ E   L   GV EITLLGQNVN++  K   G   +F+ LL  + E +G+
Sbjct: 177 REMSRDSQAILAEVESLAAKGVKEITLLGQNVNSYGNKEGFG---SFAGLLRLVHEAEGV 233

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+TTSHP+D+S  LI+A  +L  L  ++HLPVQSGS+RILK MNR +T  +Y   + 
Sbjct: 234 ERIRFTTSHPKDLSQELIQAFAELPKLCKHIHLPVQSGSNRILKKMNRGYTREDYLGKVR 293

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
            +R   P+I +++D I GFP ET++DF+ TMDL+ +  Y   F+F YS R   P     +
Sbjct: 294 ALREACPEIRLTTDIIAGFPSETEEDFQDTMDLIRRADYDSLFAFMYSDRPSAPAVKFPD 353

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419
           ++ E VK+ RL  + K   E   + + A VG   +VL+E
Sbjct: 354 KLSEEVKSRRLAQVLKVSEEITRAKHAAMVGSKQQVLVE 392


>gi|157692385|ref|YP_001486847.1| tRNA 2-methylthioadenine synthetase [Bacillus pumilus SAFR-032]
 gi|229890424|sp|A8FDH0|MIAB_BACP2 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|157681143|gb|ABV62287.1| tRNA 2-methylthioadenine synthetase [Bacillus pumilus SAFR-032]
          Length = 508

 Score =  318 bits (814), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 177/448 (39%), Positives = 263/448 (58%), Gaps = 15/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++F++++YGCQMN +D+  M  +F + GYE  NS +DA++I+LNTC IRE A  KV+  L
Sbjct: 65  RKFYIRTYGCQMNEHDTEVMAGIFMALGYEPTNSTEDANVILLNTCAIRENAENKVFGEL 124

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G ++ LK    +E  DL++ V GC++Q E     IL++ P V+++ G    +RLPELL  
Sbjct: 125 GHLKALK----REKPDLILGVCGCMSQEESVVNRILKKHPFVDLIFGTHNIHRLPELLSE 180

Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
               K +V   +S E D  E L        R+  +  ++ I  GCDKFCT+C+VPYTRG 
Sbjct: 181 CYLSKEMVIEVWSKEGDVIENLPRA-----RQGKIKGWVNIMYGCDKFCTYCIVPYTRGK 235

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR   +++ E R+L   G  EITLLGQNVNA+ GK  +  +     L+  L +I  + 
Sbjct: 236 ERSRRPDEIIQEVRRLAAEGYKEITLLGQNVNAY-GKDFEDMEYGLGHLMDELRKID-IP 293

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHPRD  D LI+       L+ ++HLPVQSGS  +LK M R++    Y  ++ +
Sbjct: 294 RIRFTTSHPRDFDDHLIEVLAKGGNLLDHIHLPVQSGSSSVLKLMARKYDRERYLDLVRK 353

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I+   P+ ++++D IVGFP ETD+ F  T+ L  ++ +  A++F YSPR GTP + M + 
Sbjct: 354 IKEAMPNASLTTDIIVGFPNETDEQFEETLSLYREVEFDAAYTFIYSPREGTPAAKMQDN 413

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440
           V  +VK ERL  L   + E          GQ +EVL+E   K   + L G +   + V  
Sbjct: 414 VPMHVKKERLQRLNALVNEISAKKMKEYEGQTVEVLVEGESKNNPEILAGYTSKSKLVNF 473

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
            +    IG+I+KV+IT  K  +L GE+V
Sbjct: 474 KAPKEAIGNIVKVKITQAKTWSLDGEMV 501


>gi|121729822|ref|ZP_01682255.1| conserved hypothetical protein [Vibrio cholerae V52]
 gi|121628426|gb|EAX60920.1| conserved hypothetical protein [Vibrio cholerae V52]
          Length = 398

 Score =  317 bits (813), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 166/369 (44%), Positives = 238/369 (64%), Gaps = 7/369 (1%)

Query: 102 LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG-KRVVDTDYSVEDKF 160
           ++ V GCVA  EG+ I  R+P V+V+ GPQT +RLPE++++++     V+D  +   +KF
Sbjct: 1   MIGVGGCVATQEGDSIRDRAPYVDVIFGPQTLHRLPEMIKQSQTSDAPVMDISFPEIEKF 60

Query: 161 ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN 220
           +RL        R  G TAF++I EGC K+CT+CVVPYTRG E+SR +  V+ E  +L + 
Sbjct: 61  DRLP-----EPRAEGPTAFVSIMEGCSKYCTYCVVPYTRGEEVSRPMDDVLFEIAQLAEQ 115

Query: 221 GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKA 280
           GV E+ LLGQNVNA+RG   DG  C+F++LL  ++ I G+ R+R+TTSHP + +D +I  
Sbjct: 116 GVREVNLLGQNVNAYRGATHDGGICSFAELLRLVATIDGIDRIRFTTSHPLEFTDDIIAV 175

Query: 281 HGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFP 340
           + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II ++R  RPDI ISSDFIVGFP
Sbjct: 176 YEDTPELVSFLHLPVQSGSDRILTMMKRPHTAIEYKSIIRKLRKARPDIQISSDFIVGFP 235

Query: 341 GETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLRE 400
           GETD DF+ TM L+  + +  +FSF +SPR GTP ++    + E VK ERL  LQ+++  
Sbjct: 236 GETDKDFQDTMKLIRDVDFDMSFSFIFSPRPGTPAADYPCDLSEEVKKERLYELQQQINS 295

Query: 401 QQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVK 459
           Q + ++   +G    +L+E   K+   +L GR+   + V        IG  + V+I DV 
Sbjct: 296 QAMRYSRLMLGTEQRILVEGPSKKDLMELRGRTENNRVVNFEGSPDLIGQFVDVKIVDVF 355

Query: 460 ISTLYGELV 468
            ++L GEL+
Sbjct: 356 PNSLRGELL 364


>gi|172037723|ref|YP_001804224.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Cyanothece sp.
           ATCC 51142]
 gi|229890507|sp|B1WU96|MIAB_CYAA5 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|171699177|gb|ACB52158.1| tRNA-i(6)A37 modification enzyme MiaB [Cyanothece sp. ATCC 51142]
          Length = 448

 Score =  317 bits (813), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 184/456 (40%), Positives = 275/456 (60%), Gaps = 23/456 (5%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
            P+R+ + ++GCQMN  DS RM  +    G++     + ADLI+ NTC IR+ A +KVYS
Sbjct: 6   TPRRYHITTFGCQMNKADSERMAGILEDMGFKWSEDPNTADLILYNTCTIRDNAEQKVYS 65

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
           +LGR    +  R  E  DL +VVAGCVAQ EGE+ILRR P +++V+GPQ   RL +LL +
Sbjct: 66  YLGR----QAKRKHEHPDLTLVVAGCVAQQEGEKILRRVPELDLVMGPQHANRLQDLLTQ 121

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRG--VTAFLTIQEGCDKFCTFCVVPYTRG 200
              G +VV T        E + IV+     +R   VTA++ I  GC++ C++CVVP  RG
Sbjct: 122 VFDGNQVVAT--------EPIHIVEDITKPRRDSTVTAWVNIIYGCNERCSYCVVPNVRG 173

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG------EKCTFSDLLYSL 254
           +E SR+   +  E   L   G  E+TLLGQN++A+ G+ L G       + T +DLLY +
Sbjct: 174 VEQSRTPEAIYAEMELLGKQGYKEVTLLGQNIDAY-GRDLPGVTETGRHQHTLTDLLYQV 232

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
            +I G+ RLR+ TSHPR  ++ LIKA  +L  +  + H+P QSG + +LK+M R +T  +
Sbjct: 233 HDISGIERLRFATSHPRYFTERLIKACHELPKVCEHFHIPFQSGDNDVLKAMKRGYTHEK 292

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
           YR IID+IR   PD +IS+D IVGFPGET+  F  T+ LVD IG+ Q  +  YSPR GTP
Sbjct: 293 YRHIIDKIREYMPDASISADAIVGFPGETEAQFENTLKLVDDIGFDQLNTAAYSPRPGTP 352

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSP 433
            +    Q+ E +K++RL  L   + ++    +   + +I EVL+E ++ K+  +++GR+ 
Sbjct: 353 AAIWDNQLSEEIKSDRLQRLNHLVAQKAAQRSQRYLNRIEEVLVEDENPKDNTQVMGRTR 412

Query: 434 WLQSVVLNSKNHNI-GDIIKVRITDVKISTLYGELV 468
             +          + G +IKV+IT+V+  +L GE +
Sbjct: 413 GNRLTFFEGDIEALKGQLIKVKITEVRAFSLTGEAI 448


>gi|255525224|ref|ZP_05392166.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Clostridium
           carboxidivorans P7]
 gi|255511087|gb|EET87385.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Clostridium
           carboxidivorans P7]
          Length = 449

 Score =  317 bits (813), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 180/446 (40%), Positives = 267/446 (59%), Gaps = 15/446 (3%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           FF++++GCQMN  DS ++  M    GYER     D+DLI+ NTC +RE A  KVY  LG 
Sbjct: 15  FFIETWGCQMNEEDSEKLSGMLKKIGYERTEVKQDSDLIIFNTCCVRENAELKVYGNLGA 74

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           ++ LK+ +      L++ + GC+ Q EG  +EI++R P V+++ G    Y+ PE L R +
Sbjct: 75  LKKLKDKKPD----LIIAICGCMMQQEGMAKEIVKRFPFVDIIFGTHNAYKFPEYLNRVK 130

Query: 145 FGKRVVDTDYSVEDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             +  +    + ED      IV+G   +RK  V AF+TI  GC+ FCT+C+VP+ RG E 
Sbjct: 131 QEQNSIIEIQNKED-----GIVEGLPIDRKSDVKAFVTIMYGCNNFCTYCIVPFVRGRER 185

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR    + +E + LI  G  EITLLGQNVN++ GK L+  K +F++LL  ++EI+GL R+
Sbjct: 186 SRKPEDIENEIKDLISKGYKEITLLGQNVNSY-GKDLEP-KVSFANLLRRINEIEGLERI 243

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           ++ T HP+D +  ++ A  + + +   +HLPVQSGS RILK MNR +T  +Y  ++ RIR
Sbjct: 244 KFMTPHPKDFTQDVLDAIAECENVCEQVHLPVQSGSSRILKKMNRHYTKEQYLDLVRRIR 303

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              PD+AI++D IVGFPGET++DF  T+ L  ++ Y  AF+F YS R GTP   M EQ+ 
Sbjct: 304 ETIPDVAITTDIIVGFPGETEEDFEETLSLAREVQYDSAFTFIYSRRKGTPADEMEEQIA 363

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVLNS 442
           E+VK ER   L + +       N    G+I E+L+E   K +  KL GR+   + V    
Sbjct: 364 EDVKHERFNRLVEIINASSAKNNKKYEGRIEEILVEDFSKNDDTKLTGRTRTGKLVNFPG 423

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
              +IG ++KV+I      +L GE +
Sbjct: 424 SKDSIGKLVKVKIVKANSFSLIGEEI 449


>gi|148379760|ref|YP_001254301.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Clostridium botulinum A
           str. ATCC 3502]
 gi|153933044|ref|YP_001384058.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Clostridium botulinum A
           str. ATCC 19397]
 gi|153936669|ref|YP_001387598.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Clostridium botulinum A
           str. Hall]
 gi|229890482|sp|A7FUL1|MIAB_CLOB1 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|229890486|sp|A5I2S3|MIAB_CLOBH RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|148289244|emb|CAL83340.1| putative radical SAM superfamily protein [Clostridium botulinum A
           str. ATCC 3502]
 gi|152929088|gb|ABS34588.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Clostridium botulinum A
           str. ATCC 19397]
 gi|152932583|gb|ABS38082.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Clostridium botulinum A
           str. Hall]
          Length = 450

 Score =  317 bits (813), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 176/443 (39%), Positives = 268/443 (60%), Gaps = 13/443 (2%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           FF++++GCQMN  DS ++  M   +GY R    ++AD+I+ NTC +RE A  KVY  LG 
Sbjct: 16  FFIETWGCQMNEEDSEKLSGMLKKEGYIRTEERENADVIIFNTCCVRENAELKVYGNLGI 75

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           ++ LK+    +  +L++ V GC+ Q +G  E I ++ P V++++G    +  P  L   +
Sbjct: 76  LKGLKS----KNPNLIIAVTGCMMQQKGMAETIKKKFPFVDIIIGTHNLHNFPNYLNEVK 131

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
                V     +++K E   I +   +RK  + AF+TI  GC+ FCT+C+VPY RG E S
Sbjct: 132 KKDTSV---LKIQEK-ENSIIENMPIDRKNSMKAFVTIMYGCNNFCTYCIVPYVRGRERS 187

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R+   +  E +KLI  G  EITLLGQNVN++ GK L+    TF++LL  ++ I+GL R+R
Sbjct: 188 RTPENIEAEIKKLISEGYKEITLLGQNVNSY-GKDLE-PNVTFAELLKRVNNIEGLERVR 245

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           + TSHP+D++D +I+A    D L   +HLPVQSGS  ILK MNR +   +Y  ++ +I+ 
Sbjct: 246 FMTSHPKDLTDDVIEAIAKCDKLCEQIHLPVQSGSSEILKKMNRHYDREKYLDVVSKIKK 305

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           + P++A+S+D IVGFPGET+ DF  T+ LV ++ Y  AF+F YS R GTP +   +QV E
Sbjct: 306 LIPNVALSTDIIVGFPGETEKDFEETLSLVKEVEYDSAFTFLYSIRKGTPAAKFEDQVPE 365

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVLNSK 443
           +VK +R   L + L E     N A  G+I EVL+E   K ++ KL+GR+   + V     
Sbjct: 366 DVKHKRFNRLVEVLNEISAKKNKAYEGKIEEVLVEGTSKNDENKLMGRTRTGKLVNFIGD 425

Query: 444 NHNIGDIIKVRITDVKISTLYGE 466
             +IG+++ V+I      +L GE
Sbjct: 426 KDSIGELVNVKIIKANSFSLTGE 448


>gi|159027937|emb|CAO87100.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 446

 Score =  317 bits (813), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 181/452 (40%), Positives = 276/452 (61%), Gaps = 23/452 (5%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+R+ + ++GCQMN  DS RM  +    G++     ++ADLI+ NTC IR+ A +KVYS+
Sbjct: 5   PRRYHITTFGCQMNKADSERMAGILEDLGFQWSEDANEADLILYNTCTIRDNAEQKVYSY 64

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR    +  R +   DL +VVAGCVAQ EGE++LRR P V++++GPQ   RL +LL++ 
Sbjct: 65  LGR----QAKRKQTQPDLTLVVAGCVAQQEGEQLLRRVPEVDLIIGPQHANRLGDLLQQV 120

Query: 144 RFGKRVVDTD--YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
             G +VV T+  + +ED  +          R   +TA++ +  GC++ CT+CVVP  RG+
Sbjct: 121 FDGSQVVATEPIHIMEDITKP--------RRDSNITAWVNVIYGCNERCTYCVVPGVRGV 172

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT------FSDLLYSLS 255
           E SR+ + +  E  +L   G  EITLLGQN++A+ G+ L G   +      F+DLLY + 
Sbjct: 173 EQSRTPAAIRAEMEQLGQQGYQEITLLGQNIDAY-GRDLPGVTASGRHLHNFTDLLYYIH 231

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
           ++ G+ RLR+ TSHPR  ++ LIKA  +L  +  + H+P QSG + ILK+M R +T  +Y
Sbjct: 232 DVAGIERLRFATSHPRYFTERLIKACQELPKVCEHFHIPFQSGDNDILKAMKRGYTQEKY 291

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
           RQII  IR + PD AIS+D IVGFPGET+  F  T+ LVD+IG+ Q  +  YSPR GTP 
Sbjct: 292 RQIIANIRDLMPDAAISADAIVGFPGETEAQFENTLKLVDEIGFDQLNTAAYSPRPGTPA 351

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPW 434
           +    Q+ E VK++RL  L   +  +    +   +G+I E+L+E  + K+  +++GR+  
Sbjct: 352 AIWDNQLSEQVKSDRLQRLNHLVATKAAERSQRYLGRIEEILVEDVNPKDASQVMGRTRG 411

Query: 435 LQSVVLNSKNHNI-GDIIKVRITDVKISTLYG 465
            +          + G  +KV+IT+V+  +L G
Sbjct: 412 NRLTFFTGNIEKLRGTFVKVKITEVRPFSLTG 443


>gi|320107085|ref|YP_004182675.1| MiaB family RNA modification protein [Terriglobus saanensis SP1PR4]
 gi|319925606|gb|ADV82681.1| RNA modification enzyme, MiaB family [Terriglobus saanensis SP1PR4]
          Length = 452

 Score =  317 bits (812), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 179/452 (39%), Positives = 276/452 (61%), Gaps = 29/452 (6%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           F+++++GCQMN +DS ++      +GY RV   + A LI+ NTC IR+KA +KV+  L  
Sbjct: 18  FYIETFGCQMNAHDSEKVIGTLEHEGYTRVEDEEAAGLILYNTCSIRDKAEQKVFHRLNE 77

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
            + ++     EG    V+  GCVAQ EGE+I  ++P V++V G  +Y  LPE+L R   G
Sbjct: 78  YKKMQG----EGKKFAVI--GCVAQQEGEKIFEKAPYVSLVSGSASYRNLPEMLVRLEAG 131

Query: 147 KRVV------DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           +  +       TD + + +F   S      N  RG   ++TI EGCDKFC++CVVPYTRG
Sbjct: 132 ENRITGLDDRQTDETFDTEFTARS------NPHRG---YITIIEGCDKFCSYCVVPYTRG 182

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E SR+   V+ EAR++ D G  +I LLGQNVN++R       K TF+++L ++ ++ G+
Sbjct: 183 KERSRTSDSVLAEARRMADMGYTDIQLLGQNVNSYRD---SSGKRTFAEVLGAIGQMAGV 239

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+TTSHPRD +  +I     +  +  ++HLPVQSGS  +LK+M R +T   Y + I 
Sbjct: 240 RRVRFTTSHPRDFTQDIIDVIDAVPQVCDHVHLPVQSGSSIVLKAMQREYTREWYLERIA 299

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
            I++ + +I++++D IVGFPGET++DF  T  L+D++GY   F+F+YSPR  TP  +M E
Sbjct: 300 WIKAAKREISMTTDIIVGFPGETEEDFEQTASLLDEVGYDGVFAFQYSPRPNTPAIHMEE 359

Query: 381 QVDENVKAERLLCLQKKLRE-QQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSV- 438
            V   VKA RL  L  + RE Q++S+    +GQ++EV++E + +++G++ GRS   ++V 
Sbjct: 360 TVGVEVKAARLQRLMDRQRELQRISYGRH-LGQVMEVMVEGYNRQRGQVTGRSSQNKTVN 418

Query: 439 --VLNSKNHNIGDIIKVRITDVKISTLYGELV 468
             V       +G    VRIT    ++L GE V
Sbjct: 419 FTVTQPILPALGSYQTVRITQTFPNSLVGEAV 450


>gi|168184857|ref|ZP_02619521.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Clostridium botulinum Bf]
 gi|182672056|gb|EDT84017.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Clostridium botulinum Bf]
          Length = 450

 Score =  317 bits (812), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 178/446 (39%), Positives = 268/446 (60%), Gaps = 17/446 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +FF++++GCQMN  DS ++  M   +GY R    ++AD+I+ NTC +RE A  KVY  LG
Sbjct: 15  KFFIETWGCQMNEEDSEKLSGMLKREGYVRTEERENADVIIFNTCCVRENAELKVYGNLG 74

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERA 143
            ++ LK     +  +L++ V GC+ Q +G  E I ++ P V++++G    +        A
Sbjct: 75  ILKGLK----YKNPNLIIAVTGCMMQQKGMAETIKKKFPFVDIIIGTHNLHNF------A 124

Query: 144 RFGKRVVDTDYSVEDKFERLSIV--DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
            +   V   D SV    E+  I+  +   +RK  + AF+TI  GC+ FCT+C+VPY RG 
Sbjct: 125 NYLNEVKKKDTSVLKIQEKEDIIIENMPIDRKNSMKAFVTIMYGCNNFCTYCIVPYVRGR 184

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR+   +  E +KLI  G  EITLLGQNVN++ GK L+  K TF++LL  ++ I+GL 
Sbjct: 185 ERSRTPENIEAEIKKLISEGYKEITLLGQNVNSY-GKDLE-PKITFAELLKRVNNIEGLE 242

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+ TSHP+D++D +I+A    D L   +HLPVQSGS  ILK MNR +   +Y  ++ +
Sbjct: 243 RVRFMTSHPKDLTDDVIEAIAKCDKLCEQIHLPVQSGSSEILKKMNRHYDREKYLDVVSK 302

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I+ + P++A+S+D IVGFPGET+ DF  T+ LV ++ Y  AF+F YS R GTP +   +Q
Sbjct: 303 IKKLIPNVALSTDIIVGFPGETEKDFEETLSLVKEVEYDSAFTFLYSIRKGTPAAKFEDQ 362

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVL 440
           V E+VK  R   L + + E     N A  G+I EVL+E   K ++ KL+GR+   + V  
Sbjct: 363 VPEDVKHNRFNRLVEVVNEISAKKNKAYEGKIEEVLVEGTSKNDENKLMGRTRAGKLVNF 422

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGE 466
                +IG ++ V+IT     +L GE
Sbjct: 423 IGNKESIGKLVNVKITKANSFSLTGE 448


>gi|196231514|ref|ZP_03130372.1| RNA modification enzyme, MiaB family [Chthoniobacter flavus
           Ellin428]
 gi|196224367|gb|EDY18879.1| RNA modification enzyme, MiaB family [Chthoniobacter flavus
           Ellin428]
          Length = 463

 Score =  317 bits (811), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 174/456 (38%), Positives = 274/456 (60%), Gaps = 16/456 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + F+K+YGCQMN  DS ++  M   +GYE      +AD+++LNTC +R+ A +K    +G
Sbjct: 3   KVFLKTYGCQMNERDSEQVARMLVEKGYEMTPHETEADVVLLNTCSVRDMAEQKAIGKMG 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +  L+ ++     +++    GC+AQ+ G E+ R    V++VVG Q ++R+ E +E+   
Sbjct: 63  MLSRLRANK----PEMIFGFLGCMAQSRGAELTRDMGHVDLVVGTQKFHRVAEYVEQIIQ 118

Query: 146 GKRVV------DTDYS---VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
            KR +      D  +S   VE++      +      ++  TAF++I +GC+  CTFC+VP
Sbjct: 119 RKRELRERLMDDARFSIVDVEEEAGSQETIREHVLTEKQATAFVSIMQGCNMHCTFCIVP 178

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE--KCTFSDLLYSL 254
            TRG E SR + ++V E   L+  GV E+TLLGQ VN +     + +  K  F  LL ++
Sbjct: 179 STRGAERSRRIEEIVHEVEGLVARGVKEVTLLGQIVNLFGRHEFEKQDGKSPFVQLLEAV 238

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
             I+GL RLR+T+ HP    D L+ A  +L  LMP++HLP+QSGSDRILK+M+R +TA +
Sbjct: 239 HAIEGLKRLRFTSPHPIGFRDDLVNAFAELPKLMPHVHLPMQSGSDRILKAMHRGYTAEK 298

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
           Y  + +++R+ RPDIA+++D IVGFPGETD+D+ AT DLV ++G+  A+ F+YSPR  TP
Sbjct: 299 YFSLTEKLRAARPDIAMTTDIIVGFPGETDEDYAATRDLVQRVGFDNAYIFRYSPRRDTP 358

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSP 433
            + M +QV E VK ER   + + +     +  +A VG+ +E+L E   K    KL GR+P
Sbjct: 359 AATMGDQVAEAVKEERNQDVLRVVDTLAKAKGEALVGRNVEILCEGPSKTNDAKLTGRTP 418

Query: 434 WLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
             + V+      +IG+I +V ++     +LYG+  V
Sbjct: 419 GNKIVIFEGSERHIGEIFEVAVSRSSGFSLYGDPAV 454


>gi|170078520|ref|YP_001735158.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Synechococcus
           sp. PCC 7002]
 gi|229891029|sp|B1XQK7|MIAB_SYNP2 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|169886189|gb|ACA99902.1| tRNA-i(6)A37 thiotransferase enzyme [Synechococcus sp. PCC 7002]
          Length = 451

 Score =  317 bits (811), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 181/455 (39%), Positives = 272/455 (59%), Gaps = 23/455 (5%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+++ + ++GCQMN  DS RM  +    GY        ADL++ NTC IR+ A +KVYS+
Sbjct: 4   PRQYHITTFGCQMNKADSERMAGILEEMGYHFTEDPYAADLVLYNTCTIRDNAEQKVYSY 63

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR    +  R +E  DL ++VAGCVAQ EGE +LRR P +++++GPQ   RL +LLE+ 
Sbjct: 64  LGR----QAKRKQEKPDLTLIVAGCVAQQEGESLLRRVPELDLIMGPQHANRLQDLLEQV 119

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKR--GVTAFLTIQEGCDKFCTFCVVPYTRGI 201
             G +VV T        E + IV+     +R   VTA++ +  GC++ CT+CVVP  RG 
Sbjct: 120 EGGSQVVAT--------EPIHIVEDITKPRRDSTVTAWVNVIYGCNEHCTYCVVPGVRGT 171

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG------EKCTFSDLLYSLS 255
           E SR    +  E  +L   G  E+TLLGQN++A+ G+ L G       K T +DLLY + 
Sbjct: 172 EQSRYPEAIRAEMEELGRQGFKEVTLLGQNIDAY-GRDLPGTTPEGRNKYTLTDLLYYVH 230

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
           ++ G+ R+R+ TSHPR  ++ LIKA  +L  +  + H+P QSG + +LK+M R +T  +Y
Sbjct: 231 DVPGIERIRFATSHPRYFTERLIKACQELPKVCEHFHIPFQSGDNEVLKAMRRGYTHEKY 290

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
           R+II+ IRS  PD +IS+D IV FPGET++ F  T+ LVD+IG+ Q  +  YSPR GTP 
Sbjct: 291 RRIINTIRSYMPDASISADAIVAFPGETEEQFENTLKLVDEIGFDQLNTAAYSPRPGTPA 350

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSPW 434
           +    Q+ E VK +RL  L   + ++    +    G+I EVL+E ++ K   +++GR+  
Sbjct: 351 ATWDNQLSEEVKGDRLQRLNHLVAQKAAERSQRYAGRIEEVLVEDQNPKNPSQVMGRTRG 410

Query: 435 LQSVVLNSK-NHNIGDIIKVRITDVKISTLYGELV 468
            +      + N   G I+ V+IT+ +  +L GE V
Sbjct: 411 NRLTFFEGEINELKGKIVAVKITEARAFSLTGEAV 445


>gi|212639354|ref|YP_002315874.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Anoxybacillus
           flavithermus WK1]
 gi|229890441|sp|B7GJM6|MIAB_ANOFW RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|212560834|gb|ACJ33889.1| 2-methylthioadenine synthetase [Anoxybacillus flavithermus WK1]
          Length = 527

 Score =  317 bits (811), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 180/448 (40%), Positives = 263/448 (58%), Gaps = 15/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++F++++YGCQMN +D+  M  +F + GYE  +  +DA++I+LNTC IRE A  KV+  +
Sbjct: 84  RKFYIRTYGCQMNEHDTEVMAGIFMALGYEPTDRPEDANVILLNTCAIRENAENKVFGEI 143

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G ++ LK +      DLL+ V GC++Q E    +IL++   V+++ G    +RLP +L+ 
Sbjct: 144 GHLKPLKQN----NPDLLLGVCGCMSQEESVVNKILKQFQYVDMIFGTHNIHRLPYILKE 199

Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           A   K +V   +S E D  E L  V     RK  + A++ I  GCDKFCT+C+VPYTRG 
Sbjct: 200 AYMSKEMVVEVWSKEGDVIENLPKV-----RKGNIKAWVNIMYGCDKFCTYCIVPYTRGK 254

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR    ++ E R L   G  EITLLGQNVNA+ GK     K    DL+  L +I  + 
Sbjct: 255 ERSRRPEDIIQEVRHLAAQGYKEITLLGQNVNAY-GKDFTDMKYGLGDLMDELRKI-DIP 312

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHPRD  D LI+       L+ ++HLPVQSGS  +LK M R++T  +Y +++ +
Sbjct: 313 RIRFTTSHPRDFDDRLIEVLAKGGNLVEHIHLPVQSGSSEVLKMMARKYTREQYLELVRK 372

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I+   P +A+++D IVGFP ETD+ F  T+ L  ++ +  AF+F YSPR GTP + M++ 
Sbjct: 373 IKEAIPGVALTTDIIVGFPNETDEQFEETLSLYREVEFDSAFTFIYSPREGTPAAKMVDN 432

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440
           V   VK ERL  L   + E          GQ++EVL+E   K     L G +   + V  
Sbjct: 433 VPMEVKKERLQRLNALVNEISAKKMKEYEGQVVEVLVEGESKNNPDVLAGYTRKNKLVNF 492

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 IG ++ VRIT+ K  TL GE+V
Sbjct: 493 VGPKSAIGQLVNVRITEAKTWTLNGEMV 520


>gi|297617255|ref|YP_003702414.1| RNA modification enzyme, MiaB family [Syntrophothermus lipocalidus
           DSM 12680]
 gi|297145092|gb|ADI01849.1| RNA modification enzyme, MiaB family [Syntrophothermus lipocalidus
           DSM 12680]
          Length = 447

 Score =  317 bits (811), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 180/448 (40%), Positives = 266/448 (59%), Gaps = 15/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +++ + +YGCQMN  D+  +  +    GY    S ++A+LI+ NTC +R  A  KVY  L
Sbjct: 9   KKYSILTYGCQMNERDTETIAGLLEKSGYVEAASPEEANLIIFNTCSVRTSAENKVYGKL 68

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG-EEILRRSPIVNVVVGPQTYYRLPELLERA 143
           G I+ LK +R     DLLV   GC+AQ E   + L    +V+++ G    + LP L+E+A
Sbjct: 69  GEIKRLKKAR----PDLLVGFGGCMAQMEEVRKKLGEGGVVDIIFGTHNLHELPRLVEKA 124

Query: 144 RFG--KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
             G  + V+D      D  E L        R  GV+AF+ I  GC+ FC++C+VP+TRG 
Sbjct: 125 EAGVERPVIDVWPEAGDIVEGLPA-----RRTGGVSAFVNIMFGCNNFCSYCIVPFTRGR 179

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR  S ++DE + L+  GV E+TLLGQNVN++ GKGL+ E   F+ LL  ++EI GL 
Sbjct: 180 ERSRKPSDIIDEVKDLVQQGVKEVTLLGQNVNSY-GKGLEPE-TDFASLLELVNEIPGLE 237

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHPRD+S+ L+        +  ++H P+Q+GS+RILK+MNR +T   Y  ++ +
Sbjct: 238 RIRFTTSHPRDVSERLLSTIASCRKVCEHIHAPLQAGSNRILKAMNRGYTREYYLDLVHK 297

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R + P +A+++D IVGFPGE+D DF  T+D+V +I +  AF+F YSPR GT  + + +Q
Sbjct: 298 MREIVPGVAVTTDLIVGFPGESDRDFEDTIDMVKRIRFDAAFTFMYSPRSGTKAARLSDQ 357

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLVGRSPWLQSVVL 440
           V   VK ERLL L +      +  N    G+ +EVL+E   K    KL GR+   + VV 
Sbjct: 358 VPLEVKKERLLQLNEIQYNIALEANRRFEGKDVEVLVEGPSKTNPRKLTGRTRTNRIVVF 417

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
             K    G ++ VR+ + K  TL GE V
Sbjct: 418 EGKPDLAGRLVMVRVREAKTFTLLGEAV 445


>gi|78042734|ref|YP_360230.1| (dimethylallyl)adenosine tRNA methylthiotransferase
           [Carboxydothermus hydrogenoformans Z-2901]
 gi|123576193|sp|Q3ACA4|MIAB_CARHZ RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|77994849|gb|ABB13748.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 440

 Score =  317 bits (811), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 180/450 (40%), Positives = 276/450 (61%), Gaps = 19/450 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + +++ ++GCQMNV+DS  +  +  S G+        ADLI++NTC +RE A  KV++ +
Sbjct: 4   KSYYIITHGCQMNVHDSETIAGILESMGFVPSPEEKTADLIIINTCSVRETAENKVFTKI 63

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAE--GEEILRRSPIVNVVVGPQTYYRLPELLER 142
           G ++ LK    +E  DL++ V GC+ Q E   + +L R P ++ + G      LP++LER
Sbjct: 64  GELKKLK----RENPDLVIGVGGCIPQQEKVAKRLLERFPHLDFIFGTHNLPELPKILER 119

Query: 143 ARFGK--RVVDTDYSVEDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
             F K  RV++   S         IV+G    R+ GV A++TI  GC+ FCT+C+VPY R
Sbjct: 120 V-FEKHERVLEVWQS------EGQIVEGIPVKREPGVRAWVTIMYGCNNFCTYCIVPYVR 172

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G E SR    ++ E R+L+  G  E+TLLGQNVN++ GK L G K  F++LL  + +I G
Sbjct: 173 GRERSRKKEDILQEIRQLVAEGYREVTLLGQNVNSY-GKDLKG-KPMFAELLADIEKIDG 230

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           L R+R+TTSHPRD++D +I+       +  +LHLPVQ+GS++ILK+M+R +T   Y  ++
Sbjct: 231 LWRVRFTTSHPRDLTDDVIEVMASSRKICEHLHLPVQAGSNKILKAMHRGYTREYYLNLV 290

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
           ++IR+  P ++ ++D IVGFPGET++DF  T+DLV K+ Y  AF+F Y+ R GTP + M 
Sbjct: 291 EKIRAKIPKVSFTTDIIVGFPGETEEDFEQTLDLVRKVRYDSAFTFVYNKRTGTPAAEMK 350

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSV 438
           +QV E VK+ R+  L +      +  N    G I E+L+E   K ++ KL GR+   + V
Sbjct: 351 DQVPEEVKSRRIQELIELQNGISLELNKNEEGNIHEILVEGKSKTDETKLAGRTRTNKLV 410

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           V N     +G ++KV+IT+ K+  L G LV
Sbjct: 411 VFNGNEDLVGKLVKVKITEGKLFHLEGVLV 440


>gi|257060632|ref|YP_003138520.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Cyanothece sp.
           PCC 8802]
 gi|256590798|gb|ACV01685.1| RNA modification enzyme, MiaB family [Cyanothece sp. PCC 8802]
          Length = 446

 Score =  316 bits (810), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 180/454 (39%), Positives = 280/454 (61%), Gaps = 23/454 (5%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + + + ++GCQMN  DS RM  +  + G+      + ADLI+ NTC IR+ A +KVYS+L
Sbjct: 6   RHYHITTFGCQMNKADSERMAGILENMGFIWSEDPNQADLILYNTCTIRDNAEQKVYSYL 65

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR    +  R  E  DL ++VAGCVAQ EGE+ILRR P +++V+GPQ   RL +LL++  
Sbjct: 66  GR----QAKRKHENPDLTLIVAGCVAQQEGEQILRRVPELDLVMGPQHANRLEDLLQQVF 121

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRG--VTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            G +VV T        E + I++     +R   +TA++ +  GC++ C++CVVP  RG+E
Sbjct: 122 DGNQVVAT--------EPIHIIEDITKPRRDSTITAWVNVIYGCNERCSYCVVPNVRGVE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG------EKCTFSDLLYSLSE 256
            SR+   ++ E   L   G  E+TLLGQN++A+ G+ L G       + T +DLLY++ +
Sbjct: 174 QSRTPEAILAEMELLGKQGYKEVTLLGQNIDAY-GRDLPGVTESGRHQHTLTDLLYTVHD 232

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           + G+ R+R+ TSHPR  ++ LI A  +L  +  + H+P QSG + ILK+M R +T  +YR
Sbjct: 233 VVGIERIRFATSHPRYFTERLIAACQELSKVCEHFHIPFQSGDNDILKAMKRGYTHEKYR 292

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
           QIID+IR   PD +IS+D IVGFPGET++ F  T++LV+ IG+ Q  +  YSPR GTP +
Sbjct: 293 QIIDKIRDYMPDASISADAIVGFPGETEEQFENTLNLVEDIGFDQLNTAAYSPRPGTPAA 352

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSPWL 435
               Q+ E VK++RL  L   + ++    +   +G+I EVL+E ++ K+  +++GR+   
Sbjct: 353 LWDNQLSEEVKSDRLQRLNHLVAQKAAERSQRYLGRIEEVLVEDQNPKDSTQVMGRTRGN 412

Query: 436 QSVVLNSK-NHNIGDIIKVRITDVKISTLYGELV 468
           +        N   G +IKV+IT+V+  +L GE+V
Sbjct: 413 RLTFFKGDINQLKGRLIKVKITEVRAFSLTGEIV 446


>gi|302391921|ref|YP_003827741.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Acetohalobium arabaticum
           DSM 5501]
 gi|302203998|gb|ADL12676.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Acetohalobium arabaticum
           DSM 5501]
          Length = 450

 Score =  316 bits (810), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 177/443 (39%), Positives = 266/443 (60%), Gaps = 13/443 (2%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           +++YGCQMN +DS ++  +   +GY+ +   + AD+I+LNTC IRE A  KV+  +G ++
Sbjct: 17  IETYGCQMNEHDSEKLAGVLKEKGYKLIEDTEKADVIILNTCCIRENAEVKVHGKIGYLK 76

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
             K    +E  DL++ + GC+ Q EG  E+I  + P V++V G    +   +LL+ A   
Sbjct: 77  QYK----RENPDLIIGICGCMMQQEGMAEKIKDKHPHVDIVFGTHNIHEFSQLLDAAEEE 132

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
              +   +  +++     I D    R+    A++TI  GC+ FCT+C+VPY RG E SRS
Sbjct: 133 SETIIDIWGEKEEL----IPDLPTRRETDHKAWVTIIYGCNNFCTYCIVPYVRGREKSRS 188

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
              +VDE ++L D+GV E+TLLGQNVN++ G  LD  K  F+DLL  L +I+G+ R+RY 
Sbjct: 189 SIDIVDEIKELADDGVKEVTLLGQNVNSY-GYDLD-RKIDFADLLEELDQIEGIERIRYM 246

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
           TSHPRD +  LIK   D + +  + HLP+QSGS RIL+ MNR +T  EY  +++ IRS  
Sbjct: 247 TSHPRDFTTKLIKTIADSNKVCEHFHLPIQSGSSRILEKMNRGYTQEEYLALVEEIRSYI 306

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           P  AI++DFIVGFPGE D+DF  T+ LV+++ +  A++FKYS R GTP + M  Q++E+V
Sbjct: 307 PQAAITTDFIVGFPGERDEDFAETLKLVEEVEFDMAYTFKYSQRSGTPAAEMEGQIEEDV 366

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLVGRSPWLQSVVLNSKNH 445
           K +RL  L     +     N   +G+ ++VL +   K    +  GR+   + VV NS   
Sbjct: 367 KQKRLQKLMDIQSDISAQKNKKLLGKTVKVLGDGESKNNPERQTGRTRTNKIVVFNSDKD 426

Query: 446 NIGDIIKVRITDVKISTLYGELV 468
             G +I V+I      TL G+LV
Sbjct: 427 LTGKLINVKINKASSWTLTGDLV 449


>gi|315648053|ref|ZP_07901154.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Paenibacillus
           vortex V453]
 gi|315276699|gb|EFU40042.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Paenibacillus
           vortex V453]
          Length = 519

 Score =  316 bits (810), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 174/447 (38%), Positives = 265/447 (59%), Gaps = 14/447 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + + V +YGCQMN +DS  ++ +    GY+       AD+I+LNTC IRE A +KV+  L
Sbjct: 74  KHYIVYTYGCQMNEHDSETIKGLLEQMGYQATEDRKQADIILLNTCAIRENAEDKVFGEL 133

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G +++LK     E  D+L+ V GC++Q E     IL++   V+++ G    +RLP L++ 
Sbjct: 134 GHLKHLK----IEKPDMLLGVCGCMSQEESVVNRILQKHGFVDLIFGTHNVHRLPHLIQE 189

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           A F K +V   +S E       I++    ++ G+  ++ I  GCDKFCT+C+VPYTRG E
Sbjct: 190 ALFSKEMVVEVWSKEG-----DIIENLPKKREGLRGWVNIMYGCDKFCTYCIVPYTRGKE 244

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR    V+ E R+L   G  EITLLGQNVNA+ GK  +  +  F DL+ ++ +I  + R
Sbjct: 245 RSRRPEDVIAEVRELARQGYKEITLLGQNVNAY-GKDFEDIEYRFGDLMDAIHKID-IPR 302

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHPRD  D LI+       L+ ++HLPVQSGS ++LK M+R++T   Y ++  +I
Sbjct: 303 VRFTTSHPRDFDDHLIEVLAKGGNLVEHIHLPVQSGSSQVLKKMSRKYTRETYLELAHKI 362

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           +   P++A ++D IVGFPGETD+ F  T+ LV ++GY  A++F YSPR GTP + M + V
Sbjct: 363 KKAIPNVAFTTDIIVGFPGETDEQFEETLSLVREVGYDAAYTFIYSPREGTPAAVMEDNV 422

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GRSPWLQSVVLN 441
              VK+ERL  L   + E     ND  +G  +EVL+E   K    ++ GR+   + V   
Sbjct: 423 PMEVKSERLQRLNAAISEYSRQSNDRLLGATVEVLVEGVSKNNDSMLSGRTRTNKLVHFE 482

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                +G  + V+ITD K   + G+++
Sbjct: 483 GSRDLVGTFVNVQITDTKTWYIKGDMI 509


>gi|83589960|ref|YP_429969.1| tRNA-i(6)A37 modification enzyme MiaB [Moorella thermoacetica ATCC
           39073]
 gi|123725725|sp|Q2RJG3|MIAB_MOOTA RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|83572874|gb|ABC19426.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Moorella thermoacetica
           ATCC 39073]
          Length = 444

 Score =  316 bits (810), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 183/454 (40%), Positives = 272/454 (59%), Gaps = 31/454 (6%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           F + +YGCQMN  DS  M D+    GYE V   ++A +I+L+TC +REKA  KVY  LG+
Sbjct: 8   FKIITYGCQMNQRDSEMMADLLQDAGYEPVAREEEAGVIILDTCCVREKAENKVYGKLGQ 67

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLE--R 142
           I  LK++      DL++ VAGC+ Q  G  E+I +++P V++++G      LP+L+E  +
Sbjct: 68  IEKLKSA----NPDLVIAVAGCMVQQPGVAEKIRQQAPYVDLLLGTGNLQELPQLIEEIK 123

Query: 143 ARFGKRVVDTDYS---VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           A    R+V  +     VED   R         R RG  AF+TI  GC+ FCT+C+VPY R
Sbjct: 124 AMHRPRIVVGEQEGPVVEDLPRR---------RARGAQAFVTITYGCNNFCTYCIVPYVR 174

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G E SR    ++ E ++L+D GV E+TLLGQNVN++     DG    F+ LL  ++ ++G
Sbjct: 175 GRERSRRPENIIKEVKELVDQGVIEVTLLGQNVNSYGRDLRDG--INFAGLLERVNAVEG 232

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           L R+RY TSHPRD +  L+     LD +  ++HLPVQ+GS+RIL+ M+R +T   Y +++
Sbjct: 233 LKRIRYVTSHPRDFTPELVTTISRLDKVCEHVHLPVQAGSNRILELMHRGYTREHYLELV 292

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
             +R   P I++++D IVGFPGET+ DF  T+DLV ++ +  AF+F YSPR GT  + M 
Sbjct: 293 ADLRRHIPGISLTTDLIVGFPGETEADFEDTLDLVARVQFDNAFTFMYSPRRGTEAATMP 352

Query: 380 EQVDENVKAERLLCLQKKLREQQVSF----NDACVGQIIEVLIEKHGK-EKGKLVGRSPW 434
            Q+   +K ERL    K+L E Q S     N+A VGQ +EVL+E   K +  +L GR+  
Sbjct: 353 GQLPTAIKKERL----KRLMELQNSISLAKNEALVGQEVEVLVEGPSKTDPDQLSGRTRT 408

Query: 435 LQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            + ++        G +++VR+T  +   L GE+V
Sbjct: 409 NKLIIFPGDQSLTGRLVRVRLTRAQTWLLKGEMV 442


>gi|117928695|ref|YP_873246.1| RNA modification protein [Acidothermus cellulolyticus 11B]
 gi|229890412|sp|A0LV00|MIAB_ACIC1 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|117649158|gb|ABK53260.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Acidothermus
           cellulolyticus 11B]
          Length = 497

 Score =  316 bits (810), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 175/453 (38%), Positives = 270/453 (59%), Gaps = 20/453 (4%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+ + V+++GCQMN++DS R+  +  + GY R    + AD++V NTC +RE A  ++Y  
Sbjct: 25  PRTYQVRTFGCQMNMHDSERIAGLLEAAGYVRAADDEPADVVVFNTCAVRENADNRLYGN 84

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LG +  +K ++     D+ + V GC+AQ +  +I+RR+P V+VV G      LP LLERA
Sbjct: 85  LGLLLPVKKAK----PDMQIAVGGCLAQKDKGDIVRRAPWVDVVFGTHNIEALPVLLERA 140

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRG--VTAFLTIQEGCDKFCTFCVVPYTRGI 201
           R  +     +  VE + E L +       +R     A++ I  GC+  CTFC+VP  RG 
Sbjct: 141 RIAR-----EAQVEIR-EALEVFPSTLPSRRESVYAAWVAISVGCNNTCTFCIVPSLRGR 194

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGL 260
           E  R    ++ E + L+ +GV E+TLLGQNVN++   G+D G++  F+ LL +   I GL
Sbjct: 195 ERDRRPGDILREIQTLVADGVLEVTLLGQNVNSY---GVDFGDRQAFAKLLRACGTIDGL 251

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+T+ HPRD +D +I A  +   +MP LH+P+QSGSD +L+ M R +   +Y  II 
Sbjct: 252 ERVRFTSPHPRDFTDDVIAAMAETPNVMPQLHMPLQSGSDAVLRRMRRSYRKEKYLDIIS 311

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           R+RS  PD AI++D IVGFPGET+DDF  T+D+V K  +A AF+F+YS R GTP + M +
Sbjct: 312 RVRSAIPDAAITTDIIVGFPGETEDDFAETLDVVRKARFAGAFTFQYSKRPGTPAAEMPD 371

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGK---EKGKLVGRSPWLQ 436
           QV  +V A+R   L   + +  +  N A VG+++EVL+ E  G+   E  ++ GR+P  +
Sbjct: 372 QVPPDVVADRFARLVALVEQIALEENQAQVGRVVEVLVAEGEGRKDAETHRMSGRAPDNR 431

Query: 437 SVVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
            V   + +   GD++ V +T      L  + V+
Sbjct: 432 LVHFRATDARPGDVVTVAVTQAAPHCLIADQVL 464


>gi|166367538|ref|YP_001659811.1| tRNA-i(6)A37 modification enzyme [Microcystis aeruginosa NIES-843]
 gi|229890619|sp|B0JVM6|MIAB_MICAN RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|166089911|dbj|BAG04619.1| tRNA-i(6)A37 modification enzyme [Microcystis aeruginosa NIES-843]
          Length = 446

 Score =  316 bits (810), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 180/452 (39%), Positives = 277/452 (61%), Gaps = 23/452 (5%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+R+ + ++GCQMN  DS RM  +    G++     ++ADLI+ NTC IR+ A +KVYS+
Sbjct: 5   PRRYHITTFGCQMNKADSERMAGILEDLGFQWSEDANEADLILYNTCTIRDNAEQKVYSY 64

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR    +  R +   DL ++VAGCVAQ EGE++LRR P V++++GPQ   RL +LL++ 
Sbjct: 65  LGR----QAKRKQTQPDLTLIVAGCVAQQEGEQLLRRVPEVDLIIGPQHANRLGDLLQQV 120

Query: 144 RFGKRVVDTD--YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
             G +VV T+  + +ED  +          R   +TA++ +  GC++ CT+CVVP  RG+
Sbjct: 121 FDGSQVVATEPIHIMEDITKP--------RRDSNITAWVNVIYGCNERCTYCVVPGVRGV 172

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT------FSDLLYSLS 255
           E SR+ + +  E  +L   G  EITLLGQN++A+ G+ L G   +      F+DLLY + 
Sbjct: 173 EQSRTPAAIRAEMAQLGQQGYQEITLLGQNIDAY-GRDLPGVTASGRHLHNFTDLLYYVH 231

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
           ++ G+ RLR+ TSHPR  ++ LIKA  +L  +  + H+P QSG + ILK+M R +T  +Y
Sbjct: 232 DVAGIERLRFATSHPRYFTERLIKACQELPKVCEHFHIPFQSGDNDILKAMKRGYTQEKY 291

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
           RQII  IR + PD AIS+D IVGFPGET+  F  T+ LVD+IG+ Q  +  YSPR GTP 
Sbjct: 292 RQIIANIRDLMPDAAISADAIVGFPGETEAQFENTLKLVDEIGFDQLNTAAYSPRPGTPA 351

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPW 434
           +   +Q+ E VK++RL  L   +  +    +   +G+I E+L+E  + K+  +++GR+  
Sbjct: 352 AIWDDQLSEQVKSDRLQRLNHLVATKAAERSQRYLGRIEEILVEDVNPKDASQVMGRTRG 411

Query: 435 LQSVVLNSKNHNI-GDIIKVRITDVKISTLYG 465
            +          + G  +KV+IT+V+  +L G
Sbjct: 412 NRLTFFTGDIEELRGKFVKVKITEVRPFSLTG 443


>gi|323698031|ref|ZP_08109943.1| RNA modification enzyme, MiaB family [Desulfovibrio sp. ND132]
 gi|323457963|gb|EGB13828.1| RNA modification enzyme, MiaB family [Desulfovibrio desulfuricans
           ND132]
          Length = 450

 Score =  316 bits (809), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 182/456 (39%), Positives = 272/456 (59%), Gaps = 30/456 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +F + ++GCQMNV+DS  +     S+G+E     DDA + +LNTC +R+K  +KVYS LG
Sbjct: 4   KFHITTFGCQMNVHDSQWLTRALESRGWEETGE-DDAQVYILNTCSVRDKPEQKVYSELG 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R+     +  K    +   V GCVAQ  G     R P V +V G       P  LER   
Sbjct: 63  RV----AAHCKRDESVFAAVGGCVAQQVGRGFFERFPFVRLVFGSDGIAGAPNALERIAA 118

Query: 146 G--KRVVDTDY-SVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           G  +RV   D+ ++ ++ ER        N ++   AF+ I +GCD FC +C+VPYTRG +
Sbjct: 119 GSDERVALLDFVTLYEERERPETPAAPDNTRQ---AFVNIMQGCDNFCAYCIVPYTRGRQ 175

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD--GEKCTFSDLLYSLSEIKGL 260
            SR+   ++DE R L+DNGV EITLLGQNVN++   GLD  G   +F+ LL +++ I GL
Sbjct: 176 KSRTPDAILDECRSLVDNGVREITLLGQNVNSF---GLDKGGTGVSFAQLLRAVAAIPGL 232

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            RLR+TTSHP+D++  +I+A G+L+ L P LHLP+Q+GSDR+LK+M R++    Y +I+D
Sbjct: 233 DRLRFTTSHPKDIAGEVIRAFGELENLCPSLHLPMQAGSDRVLKAMRRKYDMKRYLEIVD 292

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
            +++ RPDI++++D IVGFPGET++DF+ T+ +V+ +G+  +FSFKYS R G    NM  
Sbjct: 293 GLKAARPDISLTTDLIVGFPGETEEDFKETLRMVELVGFESSFSFKYSDRPGVAAVNMEP 352

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDAC----VGQIIEVLIEKHGK-EKGKLV---GRS 432
           +V     AERLL    +L+  Q +    C    VG   +  IE   + ++G  +   GR 
Sbjct: 353 KVPAEEAAERLL----RLQTLQNNITRKCLKNLVGVETDAFIEGLSRMQEGDALSWKGRD 408

Query: 433 PW--LQSVVLNSKNHNIGDIIKVRITDVKISTLYGE 466
           P   + +V +      +G ++ VRI + K  +L GE
Sbjct: 409 PAGRIVNVSVAESGDLVGRMVPVRIVEAKKHSLVGE 444


>gi|299136873|ref|ZP_07030056.1| RNA modification enzyme, MiaB family [Acidobacterium sp. MP5ACTX8]
 gi|298601388|gb|EFI57543.1| RNA modification enzyme, MiaB family [Acidobacterium sp. MP5ACTX8]
          Length = 472

 Score =  315 bits (808), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 178/450 (39%), Positives = 267/450 (59%), Gaps = 27/450 (6%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           F+++++GCQMN +DS ++      +GY +V    DA LI+ NTC IR+KA +KV+  L  
Sbjct: 18  FYIETFGCQMNAHDSEKVVGTLLREGYSQVVDEADAGLILYNTCSIRDKAEQKVFHRLNE 77

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
            + ++     EG    V+  GCVAQ EG +I  R+P V++V G  +Y  LPE+L R   G
Sbjct: 78  YKRMQG----EGKKFAVL--GCVAQQEGNKIFERAPYVSLVAGSASYRNLPEMLARLEAG 131

Query: 147 KRVV------DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           +  +       TD + + +F   +      N  RG   ++TI EGCDKFC++CVVPYTRG
Sbjct: 132 ETRITGLDDRQTDETFDTEFTSRT------NPHRG---YITIIEGCDKFCSYCVVPYTRG 182

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE-KCTFSDLLYSLSEIKG 259
            E SR+ + V+ EA+++   G  EI LLGQNVN++    LD   K +F++LL ++ E+ G
Sbjct: 183 KERSRTSASVLAEAQRIAQMGFTEIQLLGQNVNSY----LDPSGKRSFAELLAAVGEVNG 238

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           + R+R+TTSHPRD +  ++ A   +  L  ++HLPVQSGS  +L++M R +T   Y + I
Sbjct: 239 IKRVRFTTSHPRDFTKDIVDAIDAVPTLCDHVHLPVQSGSTDVLRAMQRDYTRDWYLERI 298

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
              ++ R DI+++SD IVGFPGETD DF  T+ L++ +GY   + FKYSPR  TP  +M 
Sbjct: 299 AWTKAARRDISLTSDIIVGFPGETDRDFEDTITLLETVGYDAIYGFKYSPRPNTPAIHMH 358

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSV- 438
           + + E+VK  RL  L  + RE Q       + Q +EV++E     +G++ GRS   ++V 
Sbjct: 359 DSIPEDVKVARLAILNARQREIQRENYGRHLDQTVEVMVEHGANSRGQITGRSTQNKTVN 418

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            +       G  I VRIT V  S+L GE +
Sbjct: 419 FMCDSTPPSGSYIDVRITQVFPSSLVGEAI 448


>gi|293376437|ref|ZP_06622669.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Turicibacter sanguinis
           PC909]
 gi|325845044|ref|ZP_08168360.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Turicibacter sp. HGF1]
 gi|292644946|gb|EFF63024.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Turicibacter sanguinis
           PC909]
 gi|325488920|gb|EGC91313.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Turicibacter sp. HGF1]
          Length = 502

 Score =  315 bits (808), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 174/447 (38%), Positives = 269/447 (60%), Gaps = 13/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +++ +++YGCQMN +DS  +  +    GY +  + ++ADLI+LNTC IRE A  +V+  L
Sbjct: 60  KKYLIQTYGCQMNEHDSEAIIGIAEELGYTKATTQEEADLIILNTCAIRENAENRVFGEL 119

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           GR++ LK +      DL++ V GC++Q E    +I+ +   V++V G    YRLPE +  
Sbjct: 120 GRLKRLKRT----NPDLILGVCGCMSQEEKVVNQIMEKYQYVDLVFGTHNIYRLPEYIHN 175

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           A  GK  V   +S E +     + +    R+  + A++ I  GCD+FCT+C+VPYTRG E
Sbjct: 176 ALMGKERVIEVWSQEGEI----VENMPRTRQGSIKAWVNIMYGCDEFCTYCIVPYTRGKE 231

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR    ++ E + L + G  E+TLLGQNVNA+ GK     + TF DLL  L++I  L R
Sbjct: 232 RSRLPEDIIAEIKHLAEEGYQEVTLLGQNVNAY-GKDFKDREYTFGDLLDDLNKID-LPR 289

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHPRD     I+       LM ++HLPVQSG++ +LK MNR++T   Y Q++  +
Sbjct: 290 IRFTTSHPRDFDAKTIQTLAKRGNLMEHIHLPVQSGNNEVLKRMNRKYTREMYLQLVRDL 349

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           +   P ++I++D IVGFPGET++ F+ T+ LV+++GY  AF+F +SPR GTP + M + V
Sbjct: 350 KEAIPGVSITTDIIVGFPGETEEQFQDTLSLVEEVGYEGAFTFIFSPREGTPAARMEDNV 409

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVLN 441
            E  K +RL  L + +     + N    GQ+++VL+E   K ++  L G +   + V   
Sbjct: 410 SEADKKDRLNRLNEAINRGFRNGNKRFEGQVVDVLVEGTSKNDETVLAGYTRHNKLVNFK 469

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
           +    IG I+KV+IT+ K   L GE+V
Sbjct: 470 ADESTIGKIVKVKITEAKTWHLAGEMV 496


>gi|308173664|ref|YP_003920369.1| tRNA modification protein [Bacillus amyloliquefaciens DSM 7]
 gi|307606528|emb|CBI42899.1| putative conserved AdoMet radical enzyme for tRNA modification
           [Bacillus amyloliquefaciens DSM 7]
 gi|328553404|gb|AEB23896.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
           amyloliquefaciens TA208]
 gi|328911804|gb|AEB63400.1| putative AdoMet radical enzyme for tRNA modification [Bacillus
           amyloliquefaciens LL3]
          Length = 509

 Score =  315 bits (808), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 178/447 (39%), Positives = 261/447 (58%), Gaps = 19/447 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++F++++YGCQMN +D+  M  +F + GYE  NS+DDA++I+LNTC IRE A  KV+  L
Sbjct: 66  RKFYIRTYGCQMNEHDTEVMAGIFMALGYEATNSVDDANVILLNTCAIRENAENKVFGEL 125

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G ++ LK    K   DL++ V GC++Q E     IL++ P V+++ G    +RLPELL  
Sbjct: 126 GHLKALK----KNNPDLILGVCGCMSQEESVVNRILKKHPFVDMIFGTHNIHRLPELLSE 181

Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           A   K +V   +S E D  E L  V  G      +  ++ I  GCDKFCT+C+VPYTRG 
Sbjct: 182 AYLSKEMVIEVWSKEGDVIENLPKVRNG-----KIKGWVNIMYGCDKFCTYCIVPYTRGK 236

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS--DLLYSLSEIKG 259
           E SR   +++ E R+L   G  EITLLGQNVNA+   G D E  T+   DL+  L +I  
Sbjct: 237 ERSRRPEEIIQEVRRLASEGYKEITLLGQNVNAY---GKDFEDITYGLGDLMDELRKID- 292

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           + R+R+TTSHPRD  D LI+       L+ ++HLPVQSGS  +LK M R++    Y +++
Sbjct: 293 IPRIRFTTSHPRDFDDHLIEVLAKGGNLLDHIHLPVQSGSSAMLKMMARKYDRERYLELV 352

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            +I++  P+ ++++D IVGFP ETD+ F  T+ L  ++ +  A++F YSPR GTP + M 
Sbjct: 353 GKIKAAMPNASLTTDIIVGFPNETDEQFEETLSLYREVEFDSAYTFIYSPREGTPAAKMK 412

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSV 438
           + V   VK ERL  L   ++E          G+ +EVL+E   K     L G +   + V
Sbjct: 413 DNVPMRVKKERLQRLNDLVKEISAKKMKEYEGRTVEVLVEGESKNNPDILAGYTEKSKLV 472

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYG 465
                   IG I++V+I   K  +L G
Sbjct: 473 NFKGPKDAIGKIVRVKIEQAKTWSLDG 499


>gi|239826699|ref|YP_002949323.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Geobacillus
           sp. WCH70]
 gi|239806992|gb|ACS24057.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Geobacillus sp. WCH70]
          Length = 523

 Score =  315 bits (808), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 179/448 (39%), Positives = 263/448 (58%), Gaps = 15/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++F++++YGCQMN +D+  M  +F + GYE  +  +DA++I+LNTC IRE A  KV+  +
Sbjct: 80  RKFYIRTYGCQMNEHDTEVMAGIFMALGYEPTDRPEDANVILLNTCAIRENAENKVFGEI 139

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G ++ LK +      DLL+ V GC++Q E    +IL++   V+++ G    +RLP +L  
Sbjct: 140 GHLKPLKQN----NPDLLLGVCGCMSQEESVVNKILKQYQYVDMIFGTHNIHRLPYILHE 195

Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           A   K +V   +S E D  E L        R+  + A++ I  GCDKFCT+C+VPYTRG 
Sbjct: 196 AYMSKEMVVEVWSKEGDVIENLPKA-----RRGNIKAWVNIMYGCDKFCTYCIVPYTRGK 250

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR    ++ E R L   G  EITLLGQNVNA+ GK     K    DL+  L +I  + 
Sbjct: 251 ERSRRPEDIIQEVRHLAAQGYKEITLLGQNVNAY-GKDFTDMKYGLGDLMDELRKI-DIP 308

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHPRD  D LI+       L+ ++HLPVQSGS  ILK M R++T  EY +++ +
Sbjct: 309 RIRFTTSHPRDFDDRLIEVLAKRGNLVEHIHLPVQSGSTEILKLMGRKYTREEYLELVRK 368

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I+   PD+A+++D IVGFP ET++ F  T+ L  ++ +  A++F YSPR GTP + M++ 
Sbjct: 369 IKEAIPDVALTTDIIVGFPNETEEQFEETLSLYREVEFDSAYTFIYSPREGTPAAKMVDN 428

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440
           V   VK ERL  L   + E          G+++EVL+E   K     L G +   + V  
Sbjct: 429 VPMEVKKERLQRLNALVNEISARKMKEYEGKVVEVLVEGESKNNPDVLAGYTRKNKLVNF 488

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 IG ++KVRIT+ K  TL GE+V
Sbjct: 489 IGPKSAIGKLVKVRITEAKTWTLNGEMV 516


>gi|282901705|ref|ZP_06309621.1| tRNA-i(6)A37 modification enzyme MiaB [Cylindrospermopsis
           raciborskii CS-505]
 gi|281193468|gb|EFA68449.1| tRNA-i(6)A37 modification enzyme MiaB [Cylindrospermopsis
           raciborskii CS-505]
          Length = 447

 Score =  315 bits (808), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 181/456 (39%), Positives = 279/456 (61%), Gaps = 23/456 (5%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           +P+R+ + ++GCQMN  DS RM  +    G+E   +  +A+LIV NTC IR+ A +KVYS
Sbjct: 4   LPRRYHITTFGCQMNKADSERMAGILEDMGFEWSENPHNANLIVYNTCTIRDNAEQKVYS 63

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
           +LGR    +  R  +  DL +VVAGCVAQ EG+ +LRR P +++V+GPQ   RL +LL+ 
Sbjct: 64  YLGR----QAKRKHQEPDLTLVVAGCVAQQEGQALLRRVPELDLVMGPQYANRLKDLLDS 119

Query: 143 ARFGKRVVDTD--YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
              G +VV T+  + +ED  +          R   VTA++ +  GC++ CT+CVVP  RG
Sbjct: 120 VFAGNQVVATEEVHILEDITQP--------RRDSQVTAWVNLIYGCNERCTYCVVPNVRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC------TFSDLLYSL 254
           +E SR+   + +E   L   G  EITLLGQN++A+ G+ L G         TF+DLLY +
Sbjct: 172 VEQSRTPEAIREEMEILGQQGYREITLLGQNIDAY-GRDLPGSTAEGRHLHTFTDLLYYV 230

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
            ++ G+ R+R+ TSHPR  ++ LIKA  +L  +  + H+P QSG + ILK+M+R +T  +
Sbjct: 231 HDVPGIERIRFATSHPRYFTERLIKACAELPKICEHFHIPFQSGDNEILKAMSRGYTQEK 290

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
           YR+II+ IRS  PD +IS+D IVGFPGET+  F  T+ LVD IG+    +  YSPR GTP
Sbjct: 291 YRRIINTIRSYMPDASISADAIVGFPGETEIQFENTLQLVDDIGFDHLNTAAYSPRPGTP 350

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSP 433
            +    Q+ E +K++RL  L   +  +    +   +G++ EVL+E ++ K++ +++GR+ 
Sbjct: 351 AALWDNQLSEEIKSDRLQRLNHLVNVKAAQRSQRYLGRMEEVLVEDQNPKDQSQVMGRTR 410

Query: 434 WLQSVVLNSK-NHNIGDIIKVRITDVKISTLYGELV 468
             +        N   G +++V+I +V+  +L GELV
Sbjct: 411 GNRLAFFQGDINQLRGKMVRVQIQEVRAFSLSGELV 446


>gi|289549019|ref|YP_003474007.1| RNA modification enzyme, MiaB family [Thermocrinis albus DSM 14484]
 gi|289182636|gb|ADC89880.1| RNA modification enzyme, MiaB family [Thermocrinis albus DSM 14484]
          Length = 437

 Score =  315 bits (808), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 182/447 (40%), Positives = 279/447 (62%), Gaps = 26/447 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           ++++K++GCQMN  DS R++ +    GY+  ++ ++ADLI++NTC IREK  +KVYS LG
Sbjct: 2   KYYIKTFGCQMNFNDSERIKGILHHMGYKPADTPEEADLILINTCTIREKPDQKVYSHLG 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
             + +K  R     ++++ V GC+AQ  G +++ ++P+V+++      + LPEL+++A+ 
Sbjct: 62  EYKKIKEKR----PEVIIGVCGCLAQRMGWQLVEKAPVVDLMFSSFNIHHLPELIQQAQA 117

Query: 146 GKR---VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           G R   +++     ED+      V     R     A++T+ +GCDK CT+CVVP TRG +
Sbjct: 118 GYRAIAILEEPPEDEDRMWEFKTV-----RDNAYCAYVTVMKGCDKHCTYCVVPKTRGRQ 172

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SRSL  +++E R L+ +GV EI LLGQNV AW G+ ++     FS+LLY ++EI G+ R
Sbjct: 173 RSRSLESILEEVRWLVADGVKEIHLLGQNVTAW-GQDIN---IHFSELLYRVAEIPGVER 228

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TT HP DM + + KA GD+  +  +LHLPVQSGS+RILK M R +T  EY + I  +
Sbjct: 229 IRFTTGHPSDMDERIAKAMGDIPQICEHLHLPVQSGSNRILKLMERNYTKEEYLEKIHML 288

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R   P I  S+D IVGFP ET++DF  T+D++ K+ + Q FSFKYSPR  TP + M  Q+
Sbjct: 289 REYVPGITFSTDIIVGFPTETEEDFEETLDVLRKVRFEQVFSFKYSPRPDTPAAYMEGQI 348

Query: 383 DENVKAE---RLLCLQKK-LREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSV 438
            + VK +   RLL LQK+ L E   S+     G + EVL+E    + GKLVGR+   + V
Sbjct: 349 PDEVKTDRMSRLLSLQKEILAEIARSYE----GTVQEVLLESW--QDGKLVGRTRTNRWV 402

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYG 465
            +      +G  ++VRIT  +  ++ G
Sbjct: 403 SVEGSEDMLGKTVRVRITRSQPFSMEG 429


>gi|153941109|ref|YP_001391056.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Clostridium botulinum F
           str. Langeland]
 gi|229890488|sp|A7GE46|MIAB_CLOBL RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|152937005|gb|ABS42503.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Clostridium botulinum F
           str. Langeland]
 gi|295319106|gb|ADF99483.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Clostridium botulinum F
           str. 230613]
          Length = 450

 Score =  315 bits (807), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 176/444 (39%), Positives = 266/444 (59%), Gaps = 15/444 (3%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           FF++++GCQMN  DS ++  M   +GY R    ++AD+I+ NTC +RE A  KVY  LG 
Sbjct: 16  FFIETWGCQMNEEDSEKLSGMLKKEGYIRTEERENADVIIFNTCCVRENAELKVYGNLGI 75

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           ++ LK+    +  +L++ V GC+ Q +G  E I ++ P V++++G    +  P  L   +
Sbjct: 76  LKGLKS----KNPNLIIAVTGCMMQQKGMAETIKKKFPFVDIIIGTHNLHNFPNYLNEVK 131

Query: 145 FGKRVVDTDYSVEDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
                V      ED     SI++    +RK  + AF+TI  GC+ FCT+C+VPY RG E 
Sbjct: 132 KKDTSVLKIQEKED-----SIIENMPIDRKNSMKAFVTIMYGCNNFCTYCIVPYVRGRER 186

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR+   +  E +KLI  G  EITLLGQNVN++ GK L+    TF++LL  ++ I+GL R+
Sbjct: 187 SRTPENIEAEIKKLISEGYKEITLLGQNVNSY-GKDLEP-NVTFAELLKRVNNIEGLERV 244

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+ TSHP+D++D +I+A    D L   +HLPVQSGS  ILK MNR +   +Y  ++ +I+
Sbjct: 245 RFMTSHPKDLTDDVIEAIAKCDKLCEQIHLPVQSGSSEILKKMNRHYDREKYLDVVSKIK 304

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
            + P++A+S+D IVGFPGET+ DF  T+ LV ++ Y  AF+F YS R GTP +   +QV 
Sbjct: 305 KLIPNVALSTDIIVGFPGETEKDFEETLSLVKEVEYDSAFTFLYSIRKGTPAAKFEDQVP 364

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVLNS 442
           E+VK +R   L + + E     N A  G+I EVL+E   K ++ KL+GR+   + V    
Sbjct: 365 EDVKHKRFNRLVEVVNEISAKKNKAYEGKIEEVLVEGTSKNDENKLMGRTRTGKLVNFIG 424

Query: 443 KNHNIGDIIKVRITDVKISTLYGE 466
              +IG+ + V+I      +L GE
Sbjct: 425 DKDSIGEFVNVKIIKANSFSLTGE 448


>gi|154686118|ref|YP_001421279.1| YmcB [Bacillus amyloliquefaciens FZB42]
 gi|229890448|sp|A7Z4X2|MIAB_BACA2 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|154351969|gb|ABS74048.1| YmcB [Bacillus amyloliquefaciens FZB42]
          Length = 509

 Score =  315 bits (807), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 176/445 (39%), Positives = 259/445 (58%), Gaps = 15/445 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++F++++YGCQMN +D+  M  +F + GYE  NS+DDA++I+LNTC IRE A  KV+  L
Sbjct: 66  RKFYIRTYGCQMNEHDTEVMAGIFMALGYEATNSVDDANVILLNTCAIRENAENKVFGEL 125

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G ++ LK    K   DL++ V GC++Q E     IL++ P V+++ G    +RLPELL  
Sbjct: 126 GHLKALK----KNNPDLILGVCGCMSQEESVVNRILKKHPFVDMIFGTHNIHRLPELLSE 181

Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           A   K +V   +S E D  E L  V  G      +  ++ I  GCDKFCT+C+VPYTRG 
Sbjct: 182 AYLSKEMVIEVWSKEGDVIENLPKVRNG-----KIKGWVNIMYGCDKFCTYCIVPYTRGK 236

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR   +++ E R+L   G  EITLLGQNVNA+ GK  +       DL+  L +I  + 
Sbjct: 237 ERSRRPEEIIQEVRRLASEGYKEITLLGQNVNAY-GKDFEDMTYGLGDLMDELRKID-IP 294

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHPRD  D LI+       L+ ++HLPVQSGS  +LK M R++    Y +++ +
Sbjct: 295 RIRFTTSHPRDFDDHLIEVLAKGGNLLDHIHLPVQSGSSAMLKMMARKYDRERYLELVGK 354

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I++  P+ ++++D IVGFP ETD+ F  T+ L  ++ +  A++F YSPR GTP + M + 
Sbjct: 355 IKAAMPNASLTTDIIVGFPNETDEQFEETLSLYREVEFDSAYTFIYSPREGTPAAKMKDN 414

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440
           V   VK ERL  L   ++E          G+ +EVL+E   K     L G +   + V  
Sbjct: 415 VPMRVKKERLQRLNDLVKEISAKKMKEYEGRTVEVLVEGESKNNPDILAGYTEKSKLVNF 474

Query: 441 NSKNHNIGDIIKVRITDVKISTLYG 465
                 IG I++V+I   K  +L G
Sbjct: 475 KGPKDAIGKIVRVKIEQAKTWSLDG 499


>gi|282895989|ref|ZP_06304020.1| tRNA-i(6)A37 modification enzyme MiaB [Raphidiopsis brookii D9]
 gi|281199099|gb|EFA73969.1| tRNA-i(6)A37 modification enzyme MiaB [Raphidiopsis brookii D9]
          Length = 447

 Score =  315 bits (807), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 181/456 (39%), Positives = 279/456 (61%), Gaps = 23/456 (5%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           +P+R+ + ++GCQMN  DS RM  +    G+E   +  +A+LIV NTC IR+ A +KVYS
Sbjct: 4   LPRRYHITTFGCQMNKADSERMAGILEDMGFEWSENPQNANLIVYNTCTIRDNAEQKVYS 63

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
           +LGR    +  R  +  DL +VVAGCVAQ EG+ +LRR P +++V+GPQ   RL +LL+ 
Sbjct: 64  YLGR----QAKRKHQEPDLTLVVAGCVAQQEGQALLRRVPELDLVMGPQYANRLQDLLDS 119

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRG--VTAFLTIQEGCDKFCTFCVVPYTRG 200
              G +VV T        E + I++     +R   VTA++ +  GC++ CT+CVVP  RG
Sbjct: 120 VFAGNQVVAT--------EEVHILEDITQPRRDSRVTAWVNVIYGCNERCTYCVVPNVRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC------TFSDLLYSL 254
           +E SR+   +  E   L   G  EITLLGQN++A+ G+ L G         TF+DLLY +
Sbjct: 172 VEQSRTPEAIRGEMEILGQQGYREITLLGQNIDAY-GRDLPGSTTEGRNLHTFTDLLYYV 230

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
            ++ G+ R+R+ TSHPR  ++ LIKA  +L  +  + H+P QSG + ILK+M+R +T  +
Sbjct: 231 HDVPGIERIRFATSHPRYFTERLIKACAELPKICEHFHIPFQSGDNEILKAMSRGYTQEK 290

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
           YR+II+ IRS  PD +IS+D IVGFPGET+  F+ T+ LVD IG+    +  YSPR GTP
Sbjct: 291 YRRIINTIRSYMPDASISADAIVGFPGETEIQFQNTLQLVDDIGFDHLNTAAYSPRPGTP 350

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSP 433
            +    Q+ E +K++RL  L   +  +    +   +G++ EVL+E ++ K++ +++GR+ 
Sbjct: 351 AALWDNQLSEEIKSDRLQRLNHLVNVKAAQRSQRYLGRMEEVLVEDQNPKDQSQVMGRTR 410

Query: 434 WLQSVVLNSK-NHNIGDIIKVRITDVKISTLYGELV 468
             +        N   G +++V+I +V+  +L GELV
Sbjct: 411 GNRLAFFQGDINQLRGRMVRVKIQEVRAFSLSGELV 446


>gi|23099083|ref|NP_692549.1| hypothetical protein OB1628 [Oceanobacillus iheyensis HTE831]
 gi|81746368|sp|Q8EQR4|MIAB_OCEIH RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|22777311|dbj|BAC13584.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
          Length = 519

 Score =  315 bits (807), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 173/448 (38%), Positives = 267/448 (59%), Gaps = 15/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++F +++YGCQMN +D+  M  +    GYE     ++AD+I+LNTC IRE A  KV+  +
Sbjct: 76  KKFLIRTYGCQMNEHDTEVMAGILSEMGYESTTVTEEADIILLNTCAIRENAENKVFGEI 135

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G ++ LK     E  DL++ V GC++Q E   + IL++   ++++ G    +RLP L++ 
Sbjct: 136 GHLKPLK----LENPDLIIGVCGCMSQEESVVDRILQKHQHIDLIFGTHNIHRLPHLVKE 191

Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           A FGK ++   +S E D  E L        RK  + A++ I  GCDKFCT+C+VP TRG 
Sbjct: 192 ALFGKEMIVEVWSKEGDIIENLPKA-----RKGKIKAWVNIMYGCDKFCTYCIVPMTRGK 246

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR    ++ E R L+  G  E+TLLGQNVNA+ GK  +  +    DL+  + +I  + 
Sbjct: 247 ERSRRPKDIIQEVRHLVAQGYQEVTLLGQNVNAY-GKDFEDIEYGLGDLMNDIHKI-DIP 304

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHPRD  D LI+       L+ ++HLPVQSGS  ILK MNR++T  EY +++ +
Sbjct: 305 RVRFTTSHPRDFDDRLIEVLAQGGNLLDHIHLPVQSGSSEILKKMNRKYTREEYLELVRK 364

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           IR   P+  +++D IVGFP ET++ F  TM LV+++G+  A++F YSPR GTP +   + 
Sbjct: 365 IRIAMPNATLTTDIIVGFPNETEEQFEETMTLVEEVGFEAAYTFIYSPREGTPAARKKDD 424

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440
           V E VK +RL  L + + +Q  +      G+ ++VL+E   K+  + L G +   + V  
Sbjct: 425 VPEEVKKQRLYRLNELVNKQSAASMKDYAGKKVKVLVEGESKKDPEVLAGYTEKNKLVNF 484

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                +IG I++V IT+ K  +L G +V
Sbjct: 485 KGPKSSIGKIVEVEITETKTWSLNGVMV 512


>gi|114566504|ref|YP_753658.1| 2-methylthioadenine synthetase [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
 gi|122318431|sp|Q0AYB7|MIAB_SYNWW RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|114337439|gb|ABI68287.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Syntrophomonas wolfei
           subsp. wolfei str. Goettingen]
          Length = 445

 Score =  315 bits (807), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 176/447 (39%), Positives = 271/447 (60%), Gaps = 15/447 (3%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P ++ + +YGCQMNV DS  +  +    G+ +   + +ADLIV NTC +R  A  KVY  
Sbjct: 8   PLKYRILTYGCQMNVRDSETIAGLLEGSGFNQAEDLSEADLIVFNTCSVRHSAENKVYGK 67

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQ-AEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
           LG I +LK  R     +LL+   GC+AQ  E  + L++   V+VV G    + LP L+ R
Sbjct: 68  LGEIASLKKKR----PELLIAFGGCMAQLPEVRQKLKKRG-VDVVFGTHNIHELPYLIAR 122

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYN-RKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           A+  +  V   +  E      SIV+   + RK G++AF+ I  GC+ FC++C+VPYTRG 
Sbjct: 123 AKEKRSPVFEVWEKEG-----SIVEPLPSCRKPGLSAFVNIMFGCNNFCSYCIVPYTRGR 177

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR    ++ E  +L   G  E+TLLGQNVN++ G+GL GEK  F+DLLY  + + G+ 
Sbjct: 178 ERSRKADDIIRELEELAAAGYKEVTLLGQNVNSY-GRGL-GEKIEFADLLYRANSVAGIE 235

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHP+D+SD L++A  + + L  ++H P+Q+GS+RIL+ MNR ++   Y ++++R
Sbjct: 236 RIRFTTSHPKDVSDRLLQAIAECEKLCEHIHAPLQAGSNRILQRMNRNYSREHYLKLVER 295

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R   P ++I+SD IVGFPGET++DF  T+D+V+++ +  AF+F YS R GT  + + EQ
Sbjct: 296 MRHYVPGVSITSDLIVGFPGETEEDFLETLDMVERVRFDAAFTFLYSQRSGTRAAELAEQ 355

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVL 440
           +    K +RL  L ++  +     N    G I EVL+E   K    KL  R+   + V+ 
Sbjct: 356 IPLEEKKQRLERLNRRQYQIATEINQELQGSIQEVLVEGPSKTNPQKLTSRTRSNRIVIF 415

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGEL 467
           +     IG +I V+IT+ K  +L+GE+
Sbjct: 416 SGGKDLIGRLINVKITEAKTFSLFGEI 442


>gi|146297053|ref|YP_001180824.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|229890495|sp|A4XL48|MIAB_CALS8 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|145410629|gb|ABP67633.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 471

 Score =  315 bits (807), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 170/446 (38%), Positives = 277/446 (62%), Gaps = 16/446 (3%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           + + +YGCQMNV+DS ++  M  + GY    ++++ADLI+ NTC +RE A  +VY  +G 
Sbjct: 38  YHIITYGCQMNVHDSEKLAGMLNAMGYVETQNLEEADLIIFNTCAVREHAESRVYGNIGP 97

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQA--EGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           ++ LK+ +     +L++ V GC+ Q     +++ +  P ++++ G ++ ++ P+LL +A 
Sbjct: 98  LKRLKDKK----PELIIGVCGCMPQQLEVAQKLAKVFPFLDIIFGTKSLHKFPQLLYKAI 153

Query: 145 FGKRVVDTDYSVEDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             K+ V      ED      +V+G    R+ GV+AF+ I  GC+ FC++C+VPY RG E 
Sbjct: 154 TTKKTVIDVAEDED-----VVVEGIPTARREGVSAFVNIIYGCNNFCSYCIVPYVRGRER 208

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL-DGEKCTFSDLLYSLSEIKGLVR 262
           SR   +++ E ++L  NGV E+TLLGQNVN++ GK L DG    F  LL  ++ I+G+ R
Sbjct: 209 SRRPEEIIFEIQQLAANGVKEVTLLGQNVNSY-GKDLPDG--IPFYKLLEKVNAIEGIER 265

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+ TSHP+D+SD LI A  DL+ +  ++HLPVQSGS RIL+ MNR +T  +Y ++++++
Sbjct: 266 IRFVTSHPKDLSDELIFAMRDLEKVCEHIHLPVQSGSTRILRQMNRHYTKEDYLRLVEKL 325

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           +   PDIAI++D IVGFPGET++DF  T+D+V K+ +  A++F YS R GT  + M  QV
Sbjct: 326 KENIPDIAITTDIIVGFPGETEEDFEDTLDVVRKVEFDSAYTFIYSKRKGTKAAQMPNQV 385

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
            + VK ER   L K + E  +  N   +G++ E+LI+ + K    L GR+   + V +  
Sbjct: 386 PDEVKHERFQRLVKLVEEIALKKNQQMLGKVCEILIDGYSKRNNLLEGRTRTNKVVNVKC 445

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
            +  +   + V+I +     LYGE++
Sbjct: 446 SDEFMYKFVNVKILEASRHWLYGEVI 471


>gi|218248044|ref|YP_002373415.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Cyanothece sp.
           PCC 8801]
 gi|229890509|sp|B7JZ48|MIAB_CYAP8 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|218168522|gb|ACK67259.1| RNA modification enzyme, MiaB family [Cyanothece sp. PCC 8801]
          Length = 451

 Score =  315 bits (807), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 180/454 (39%), Positives = 279/454 (61%), Gaps = 23/454 (5%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + + + ++GCQMN  DS RM  +  + G+      + ADLI+ NTC IR+ A +KVYS+L
Sbjct: 11  RHYHITTFGCQMNKADSERMAGILENMGFIWSEDPNQADLILYNTCTIRDNAEQKVYSYL 70

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR    +  R  E  DL ++VAGCVAQ EGE+ILRR P +++V+GPQ   RL +LL++  
Sbjct: 71  GR----QAKRKHENPDLTLIVAGCVAQQEGEQILRRVPELDLVMGPQHANRLEDLLQQVF 126

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKR--GVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            G +VV T        E + I++     +R   +TA++ +  GC++ C++CVVP  RG+E
Sbjct: 127 DGNQVVAT--------EPIHIIEDITKPRRDSTITAWVNVIYGCNERCSYCVVPNVRGVE 178

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG------EKCTFSDLLYSLSE 256
            SR+   ++ E   L   G  E+TLLGQN++A+ G+ L G       + T +DLLY++ +
Sbjct: 179 QSRTPEAILAEMELLGKQGYKEVTLLGQNIDAY-GRDLPGVTESGRHQHTLTDLLYTVHD 237

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           + G+ R+R+ TSHPR  ++ LI A  +L  +  + H+P QSG + ILK+M R +T  +YR
Sbjct: 238 VVGIERIRFATSHPRYFTERLIAACQELSKVCEHFHIPFQSGDNDILKAMKRGYTHEKYR 297

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
           QIID+IR   PD +IS+D IVGFPGET++ F  T+ LV+ IG+ Q  +  YSPR GTP +
Sbjct: 298 QIIDKIRDYMPDASISADAIVGFPGETEEQFENTLKLVEDIGFDQLNTAAYSPRPGTPAA 357

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSPWL 435
               Q+ E VK++RL  L   + ++    +   +G+I EVL+E ++ K+  +++GR+   
Sbjct: 358 LWDNQLSEEVKSDRLQRLNHLVAQKAAERSQRYLGRIEEVLVEDQNPKDSTQVMGRTRGN 417

Query: 436 QSVVLNSK-NHNIGDIIKVRITDVKISTLYGELV 468
           +        N   G +IKV+IT+V+  +L GE+V
Sbjct: 418 RLTFFKGDINQLKGRLIKVKITEVRAFSLTGEIV 451


>gi|302874905|ref|YP_003843538.1| RNA modification enzyme, MiaB family [Clostridium cellulovorans
           743B]
 gi|307690475|ref|ZP_07632921.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Clostridium
           cellulovorans 743B]
 gi|302577762|gb|ADL51774.1| RNA modification enzyme, MiaB family [Clostridium cellulovorans
           743B]
          Length = 452

 Score =  315 bits (806), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 165/445 (37%), Positives = 274/445 (61%), Gaps = 17/445 (3%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           F + ++GCQMN  DS ++  +    GYE+    ++A +I+ NTC +RE A  KV+  +G 
Sbjct: 18  FCITTFGCQMNEEDSEKLSGVLMEMGYEKTEKREEASIIIFNTCAVRENAELKVFGNIGA 77

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           ++ +K    ++   L++ + GC+ Q +G  EE++++ P V+++ G    +  PE L   +
Sbjct: 78  LKKMK----EKNPSLIIGICGCMMQQKGMAEEVIKKYPFVDIIFGTHNSHMFPEYLNSVK 133

Query: 145 -FGKRVVDTDYSVEDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
             GK VV+    + DK   + IV+G   +R   + AF+TI  GC+ FCT+C+VPY RG E
Sbjct: 134 QHGKSVVE----ILDK--EVGIVEGLPIDRLSSIKAFVTIMYGCNNFCTYCIVPYVRGRE 187

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR    +++E ++L+  G  E+TLLGQNVN++ GKGL+ E+  F+ LL  ++EI+GL R
Sbjct: 188 RSRKPEDIINEIKELVKVGYKEVTLLGQNVNSY-GKGLE-EEIDFAKLLRLVNEIEGLER 245

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +++ +SHP+D++D +IKA  + D +   +HLPVQ+GS  +LK MNR +T  +Y  ++ RI
Sbjct: 246 IKFMSSHPKDLTDDVIKAIAECDKVCEQIHLPVQAGSTSLLKRMNRHYTREQYLDLVKRI 305

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           +   P++A+++D I+GFPGET++D    + LV ++ Y  AF+F YSPR GTP + + +Q+
Sbjct: 306 KENIPNVALTTDLIIGFPGETEEDVEEVISLVKEVRYDSAFTFLYSPRKGTPAAELPDQI 365

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVLN 441
            E++K  R   L  +L +     +    G+++EVL+E   K +  KL+GR+   + V   
Sbjct: 366 PEDIKHRRFNALVDELNKIGAEISKEYDGKVVEVLVEGPSKNDDNKLMGRTRTGKLVNFT 425

Query: 442 SKNHNIGDIIKVRITDVKISTLYGE 466
               NIG +I V+IT  +  +L GE
Sbjct: 426 GNPENIGKLINVKITKTQAFSLLGE 450


>gi|291287753|ref|YP_003504569.1| RNA modification enzyme, MiaB family [Denitrovibrio acetiphilus DSM
           12809]
 gi|290884913|gb|ADD68613.1| RNA modification enzyme, MiaB family [Denitrovibrio acetiphilus DSM
           12809]
          Length = 435

 Score =  315 bits (806), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 175/457 (38%), Positives = 279/457 (61%), Gaps = 36/457 (7%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +++F+ + GCQMN YDSLR+  +F   G+     M++ D +++NTC +REK   K  S +
Sbjct: 2   RKYFIHTMGCQMNEYDSLRIAAVFDKIGFTEAEEMEEGDYLIVNTCSVREKPQHKAESAI 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR R +K  R     ++ +   GCVAQ EGE +L+ +  ++ VVG    +RL E++    
Sbjct: 62  GRFRQIKRRR----PEVKIGFCGCVAQQEGENLLKTNKDIDFVVGTDGLHRLEEVVAHVE 117

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGG-----YNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
            G+R+ DT            + +GG     +NR+  V++F+TI +GC+ FC++C+VPY R
Sbjct: 118 AGERLSDT-----------QVNEGGLEIDIFNREVSVSSFVTIMKGCNNFCSYCIVPYVR 166

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G E SR  S+++DE + L D G  EITLLGQNVN++ G  L  +  +F +LL  +S+++G
Sbjct: 167 GREKSREQSEIIDEIKYLADKGAREITLLGQNVNSY-GTALT-DPVSFPELLDKVSDVEG 224

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           + R+R+ TSHP+D S+ LI      D +  YLHLP+QSGS+ +L+ MNR++T   Y++ +
Sbjct: 225 IKRIRFVTSHPKDFSNELIDVMRGNDKICEYLHLPLQSGSNAVLQKMNRKYTYDHYKERV 284

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            R + + PD+A+SSDFIVGFPGET++DF++TM  +++I Y   ++F YS R GT   +  
Sbjct: 285 LRAKEMIPDLALSSDFIVGFPGETEEDFQSTMKALEEIRYDMIYAFNYSTRPGTKAESFN 344

Query: 380 EQVDENVKAERLLCL---QKK-LREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRSPW 434
           + V   VK  RL  L   QK+ + E   ++ D     ++EV++E   K+  G+  GR+  
Sbjct: 345 DDVPLEVKKMRLAKLLDAQKRIIAENSAAYQDL----VVEVMVEGESKKGAGQYSGRN-- 398

Query: 435 LQSVVLNSKNHNI---GDIIKVRITDVKISTLYGELV 468
            Q+ V+N  +  I   GD + V+IT+ + ++L GE V
Sbjct: 399 RQNRVVNFSSETILSSGDFVNVKITEPRPNSLLGERV 435


>gi|298529986|ref|ZP_07017388.1| RNA modification enzyme, MiaB family [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298509360|gb|EFI33264.1| RNA modification enzyme, MiaB family [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 443

 Score =  314 bits (805), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 173/450 (38%), Positives = 268/450 (59%), Gaps = 17/450 (3%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           +++ ++GCQMNV DSL ++    + G +  +  ++AD+ ++NTC +REK  +K+YS LGR
Sbjct: 3   YYIFTFGCQMNVSDSLWLDQALQALGLKPCSREEEADIFLINTCSVREKPEQKIYSLLGR 62

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           +        +E   +   V GCVAQ  G   L R   V +V G      +PE ++R    
Sbjct: 63  LYEY----TREKPHVFAGVGGCVAQQVGRRFLERFSFVRLVFGTDGLVMVPEAIKRLLKD 118

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRG-VTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           + +  +    +D +        GY  ++  V AF+ I +GCD FC +C+VPYTRG + SR
Sbjct: 119 RHLKTSLLDFQDHYPERK----GYQPEKAPVQAFVNIMQGCDNFCAYCIVPYTRGRQKSR 174

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           S  +++ E   L+  G  EITLLGQNVN++ G+  +G    FS+LL S++ + GL RLR+
Sbjct: 175 SSREILQECAGLVARGCREITLLGQNVNSF-GQDKEGRDIPFSELLRSVAALPGLERLRF 233

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
           TTSHP+D+ + +I+A G+L  L P+LHLP+QSGSD++L SM R++ + +Y +I++++RS 
Sbjct: 234 TTSHPKDIDEEVIQAFGELPALCPHLHLPLQSGSDQVLSSMGRKYNSDDYLRIVEKLRSS 293

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            PDI++++D IVGFPGETD DF  TMD+V K+G+  +FSFKYS R G   ++M  ++D+ 
Sbjct: 294 CPDISLTTDLIVGFPGETDADFEDTMDIVKKVGFDSSFSFKYSDRPGVRAADMQPKIDDE 353

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-----KLVGRSPW--LQSV 438
            K ERL  LQ+   E         VG+   VL+E   K++G        GR P   L  V
Sbjct: 354 TKTERLARLQQLQSELTRDRLAGRVGRQELVLVEGRSKKQGPPDTVSWTGRDPGGRLVHV 413

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            L  +    G++++V I      +L GE++
Sbjct: 414 HLPVERDCTGEVLRVTIVRAHKHSLSGEVI 443


>gi|262038865|ref|ZP_06012212.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Leptotrichia goodfellowii
           F0264]
 gi|261747116|gb|EEY34608.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Leptotrichia goodfellowii
           F0264]
          Length = 441

 Score =  314 bits (805), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 171/446 (38%), Positives = 270/446 (60%), Gaps = 10/446 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +R  + +YGCQMNV +S +M+ M  + GYE    ++++DL+ LNTC +RE AA KVY  L
Sbjct: 3   KRATIITYGCQMNVNESAKMKQMLQTMGYEITEDINESDLVFLNTCTVREGAAVKVYGKL 62

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           G ++ +K  +    G++++ V GC+AQ   +E ++++P V++V+G Q   R+P++LER  
Sbjct: 63  GDLKRIKEEK---NGNMIIGVTGCLAQEVRDEFIKKTPYVDLVLGNQNIGRIPDILERIE 119

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G+        VED+ E    VD  +     + A ++I  GC+ +CTFC+VPY RG+E S
Sbjct: 120 KGEET--HIVMVEDEDELPKRVDADFGDD--IVASISITYGCNNYCTFCIVPYVRGMERS 175

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
             L +V+ +       G  EI  LGQNVN++ G  L  E   F+ LL   ++I+G   ++
Sbjct: 176 VPLHEVLRDVEFYTKRGYKEILFLGQNVNSY-GSDLADENDNFATLLNESAKIEGDFWIK 234

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           Y + HP+D +D +I+A  +   +   LHLP+QSGS +IL +MNR +T  E+ Q+  +I+ 
Sbjct: 235 YVSPHPKDFNDEVIEAIANNSKISRMLHLPLQSGSTKILNAMNRGYTKEEFIQLAKKIKE 294

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             PDI +++D IVGFPGETD DF+ TMD+V++IG+  AF F YS R GTP + M EQV+E
Sbjct: 295 RIPDIGLTTDIIVGFPGETDKDFQDTMDVVEEIGFENAFMFMYSKRTGTPAATMEEQVNE 354

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVLNSK 443
             K ERL  L +    +    +   +G++++VL+E   ++  + L GR+   + V+  S 
Sbjct: 355 QTKNERLQQLMRLQNRKAKEESQKYLGKVVKVLVEGPSRKNPEMLTGRTSTHKIVLFRSD 414

Query: 444 NHNI-GDIIKVRITDVKISTLYGELV 468
             ++ G  +  +I + K  TLYGELV
Sbjct: 415 RKDLKGQFVHTKIYEAKTWTLYGELV 440


>gi|168180374|ref|ZP_02615038.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Clostridium botulinum
           NCTC 2916]
 gi|226949042|ref|YP_002804133.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Clostridium
           botulinum A2 str. Kyoto]
 gi|182668731|gb|EDT80709.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Clostridium botulinum
           NCTC 2916]
 gi|226843034|gb|ACO85700.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Clostridium botulinum A2
           str. Kyoto]
          Length = 450

 Score =  314 bits (805), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 175/443 (39%), Positives = 267/443 (60%), Gaps = 13/443 (2%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           FF++++GCQMN  DS ++  M   +GY R    ++AD+I+ NTC +RE A  KVY  LG 
Sbjct: 16  FFIETWGCQMNEEDSEKLSGMLKKEGYIRTEERENADVIIFNTCCVRENAELKVYGNLGI 75

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           ++ LK+    +  +L++ V GC+ Q +G  E I ++ P V++++G    +  P  L   +
Sbjct: 76  LKGLKS----KNPNLIIAVTGCMMQQKGMAETIKKKFPFVDIIIGTHNLHNFPNYLNEVK 131

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
                V     +++K E   I +   +RK  + AF+TI  GC+ FCT+C+VPY RG E S
Sbjct: 132 KKDTSV---LKIQEK-ENSIIENMPIDRKNSMKAFVTIMYGCNNFCTYCIVPYVRGRERS 187

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R+   +  E +KLI     EITLLGQNVN++ GK L+    TF++LL  ++ I+GL R+R
Sbjct: 188 RTPENIEAEIKKLISEDYKEITLLGQNVNSY-GKDLEP-NVTFAELLKRVNNIEGLERVR 245

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           + TSHP+D++D +I+A    D L   +HLPVQSGS  ILK MNR +   +Y  ++ +I+ 
Sbjct: 246 FMTSHPKDLTDDVIEAIAKCDKLCEQIHLPVQSGSSEILKKMNRHYDREKYLDVVSKIKK 305

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           + P++A+S+D IVGFPGET+ DF  T+ LV ++ Y  AF+F YS R GTP +   +QV E
Sbjct: 306 LIPNVALSTDIIVGFPGETEKDFEKTLSLVKEVEYDSAFTFLYSIRKGTPAAKFEDQVPE 365

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVLNSK 443
           +VK +R   L + L E     N A  G+I EVL+E   K ++ KL+GR+   + V     
Sbjct: 366 DVKHKRFNRLVEVLNEISAKKNKAYEGKIEEVLVEGTSKNDENKLMGRTRTGKLVNFIGD 425

Query: 444 NHNIGDIIKVRITDVKISTLYGE 466
             +IG+++ V+I      +L GE
Sbjct: 426 KDSIGELVNVKIIKANSFSLTGE 448


>gi|116515198|ref|YP_802827.1| hypothetical protein BCc_272 [Buchnera aphidicola str. Cc (Cinara
           cedri)]
 gi|122285406|sp|Q057G5|MIAB_BUCCC RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|116257052|gb|ABJ90734.1| bifunctional enzyme involved in thiolation and methylation of tRNA
           [Buchnera aphidicola str. Cc (Cinara cedri)]
          Length = 435

 Score =  314 bits (805), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 170/438 (38%), Positives = 272/438 (62%), Gaps = 13/438 (2%)

Query: 36  MNVYDSLRMEDMFFSQG-YERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSR 94
           MN +DS  +E++      Y      + +D+++LNTC IREKA EK++  LGR + LK   
Sbjct: 1   MNEHDSSIIENILKKTNLYIITKKPEISDILILNTCSIREKAQEKLFHQLGRWKKLK--- 57

Query: 95  IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-ERARFGKRVVDTD 153
            ++   +L+ V GCVA  EG++I +R+  ++++ GPQT ++LP+LL E  +    +++  
Sbjct: 58  -QKNSKILIAVGGCVAVQEGKKIYKRAKFIDIIFGPQTLHKLPKLLIESNKKKSLIINIK 116

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
                KF     ++   N K+  ++F+TI EGC+K+C+FC+VPYTRG E+SR+  +++ E
Sbjct: 117 KKSLKKFN--YTINKNTNIKKKFSSFVTIMEGCNKYCSFCIVPYTRGKEVSRNNKKIISE 174

Query: 214 ARKLIDNGVCEITLLGQNVNAWR-GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
             +L   GV EITLLGQNVNA++     + +  +FSDLLYS+SEI  + R+R+ TSHP +
Sbjct: 175 IIELSKKGVREITLLGQNVNAYKFSDTFNKKNYSFSDLLYSISEIPRIDRIRFITSHPVE 234

Query: 273 MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAIS 332
            ++ +I+A+  +  L  +LHLPVQSGS++ILK M R +T  +Y  I+++I+ +RP I IS
Sbjct: 235 FNNNIIEAYKKIPKLTNFLHLPVQSGSNKILKLMKRGYTIEKYENIVNKIKKIRPKINIS 294

Query: 333 SDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLL 392
           SDFI+GFPGET +DF+ T+  + KI +  ++SF YS R  T  S + + V    K +RL 
Sbjct: 295 SDFIIGFPGETKEDFQKTIYFISKINFDTSYSFIYSKRPRTRASKLEDNVTMEEKKKRLY 354

Query: 393 CLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNSKNHNIGDII 451
            +Q+K+ +Q   +      QI  VL+E   K    +L GR+   ++V        IG+ I
Sbjct: 355 KVQQKINQQAFQWKRRSTEQI--VLVEGISKNNIQELYGRTENNRTVFFEGNPKFIGNFI 412

Query: 452 KVRITDVKIST-LYGELV 468
           K++I  +K +T L G+++
Sbjct: 413 KLKIISIKYNTFLKGKII 430


>gi|283778559|ref|YP_003369314.1| RNA modification enzyme, MiaB family [Pirellula staleyi DSM 6068]
 gi|283437012|gb|ADB15454.1| RNA modification enzyme, MiaB family [Pirellula staleyi DSM 6068]
          Length = 475

 Score =  314 bits (805), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 187/469 (39%), Positives = 276/469 (58%), Gaps = 33/469 (7%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +R ++++ GCQMNV DS  +      +GYE       AD+++ NTC +RE+A  K YS L
Sbjct: 2   KRLYIETVGCQMNVLDSEMVVASLRKRGYELERDEASADVLLFNTCSVREQAENKTYSAL 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER-- 142
           GR+R+LK    K   D ++ V GC+AQ + + +  R+P V++VVGP    R+P+L+++  
Sbjct: 62  GRLRSLK----KANPDKIIGVMGCMAQKDQQLVFDRAPYVDLVVGPGQLSRIPDLIDQVA 117

Query: 143 ARFGKRVV-------DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
           A  GK++          +  V    E    +     R     A+L IQ GCDKFCT+C+V
Sbjct: 118 AGHGKQMAVSLGRKDAANEEVRRSHETFDPLRDPTMRPTPFQAYLRIQIGCDKFCTYCIV 177

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT-FSDLLYSL 254
           P TRG E  R   Q+ DEAR L D G  EITL+GQ VN++R K   GE  T  SDLL +L
Sbjct: 178 PSTRGPEQGRPPQQIYDEARILADQGCKEITLIGQTVNSYRYKS--GESTTRLSDLLVNL 235

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
           SEI G+ RL++ T++P+DM++ L+ A  DL  + PYLH+P QSGS+ +L  M R ++  +
Sbjct: 236 SEIDGIKRLKFVTNYPKDMTNDLLAAVRDLPKVSPYLHVPAQSGSNTVLTRMKRGYSVED 295

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
           YR+++ RI  + PD A++SDFIVGF GET+ DF AT  LV    +  +F FKYS R GT 
Sbjct: 296 YREMMARIYEMVPDAAVTSDFIVGFCGETEADFEATKQLVSDCRFKNSFIFKYSERPGTK 355

Query: 375 GSNML-EQVDENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIE-------KHGK 423
           G+ +L + +  +VK  R   LL LQ ++ EQ+   N   +GQ +EVL+E         G+
Sbjct: 356 GAELLADDIPFDVKHRRNNELLELQNRISEQE---NQKFLGQRVEVLVEGPSSRAVSRGE 412

Query: 424 EKGKLV---GRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
            +G LV   GR+P  + VV +      G+++++ I +    TL+G +V 
Sbjct: 413 VEGDLVQLTGRTPCDRIVVFDGNRRLTGELVQLAIYECAPHTLFGAIVT 461


>gi|251797360|ref|YP_003012091.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Paenibacillus
           sp. JDR-2]
 gi|247544986|gb|ACT02005.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Paenibacillus sp. JDR-2]
          Length = 525

 Score =  314 bits (804), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 179/451 (39%), Positives = 269/451 (59%), Gaps = 15/451 (3%)

Query: 20  QCIVPQRFF-VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAE 78
           Q I   +F+ +++YGCQMN +D+  M+ MF   GY   +    AD+I+LNTC IRE A +
Sbjct: 76  QTIGKGKFYLIQTYGCQMNEHDTEVMKGMFEEMGYTGTDDRLQADVILLNTCAIRENAED 135

Query: 79  KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRL 136
           KV+  LG ++ LK  +     +LL+ V GC++Q E    +IL++   V+++ G    +RL
Sbjct: 136 KVFGELGHLKTLKLQK----PELLLGVCGCMSQEESVVGKILQKHAFVDMIFGTHNIHRL 191

Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
           P LL+ A F K +V   +S E       I++    ++ G+ A++ I  GCDKFCT+C+VP
Sbjct: 192 PHLLQNAYFSKEMVVEVWSKEG-----DIIENMPKKRDGMRAWVNIMYGCDKFCTYCIVP 246

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256
           YTRG E SR    V+ E R+L   G  EITLLGQNVNA+ GK  +     F DL++ +S+
Sbjct: 247 YTRGKERSRRPEDVIAEVRELARQGFKEITLLGQNVNAY-GKDFEDISYRFGDLMHDISK 305

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           I  + R+R+TTSHPRD  D LI+       L+ ++HLP+QSGS  +LK M+R+++  +  
Sbjct: 306 ID-IPRIRFTTSHPRDFDDHLIEVLAQGGNLVEHIHLPIQSGSTEVLKRMSRKYSREQIF 364

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
           ++  +I+   P++++S+D IVGFPGETD+ F  TM LV +IG+  A++F YSPR GTP +
Sbjct: 365 ELAAKIKRAIPNVSLSTDIIVGFPGETDEQFEDTMTLVRQIGFDFAYTFIYSPREGTPAA 424

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWL 435
            M + V   +K +RL  L + + E     N+   G+I+EVL+E   K     L GR+   
Sbjct: 425 GMEDNVPMELKKKRLKRLNELMAELGRRGNERMEGEIVEVLVEGESKNNPNILAGRTRTN 484

Query: 436 QSVVLNSKNHNIGDIIKVRITDVKISTLYGE 466
           + V L      IG  I VR+T+ K   +  E
Sbjct: 485 KLVHLEGPKEWIGQFIHVRVTEAKTWYIKAE 515


>gi|254411897|ref|ZP_05025673.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Microcoleus
           chthonoplastes PCC 7420]
 gi|196181619|gb|EDX76607.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Microcoleus
           chthonoplastes PCC 7420]
          Length = 451

 Score =  313 bits (803), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 181/456 (39%), Positives = 276/456 (60%), Gaps = 23/456 (5%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+R+ + ++GCQMN  DS RM  +    G+E     +DA LI+ NTC IR+ A +KVYS+
Sbjct: 5   PRRYHITTFGCQMNKADSERMAGILEDMGFEWSEDPNDASLILYNTCTIRDNAEQKVYSY 64

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR    +  R +E  DL ++VAGCVAQ EGE +LRR P +++V+GPQ   RL +LLE+ 
Sbjct: 65  LGR----QAKRKQEQADLTLIVAGCVAQQEGEALLRRVPELDLVMGPQHANRLKDLLEQV 120

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKR--GVTAFLTIQEGCDKFCTFCVVPYTRGI 201
             G ++V T        E + IV+     +R   VTA++ +  GC++ CT+CVVP  RG+
Sbjct: 121 GDGNQIVAT--------EPIHIVEDITKPRRDSTVTAWVNVIYGCNERCTYCVVPNVRGV 172

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG------EKCTFSDLLYSLS 255
           E SR+   +  E  +L   G  EITLLGQN++A+ G+ L G       + T +DLLY + 
Sbjct: 173 EQSRTPEAIRAEMAELGQQGYKEITLLGQNIDAY-GRDLPGVTESGRHQHTLTDLLYYVH 231

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
           ++  + R+R+ TSHPR  ++ LI+A  +L  +  + H+P QSG + ILK+M R +T  +Y
Sbjct: 232 DVPSIERIRFATSHPRYFTERLIRACKELPKVCEHFHIPFQSGDNDILKAMARGYTQEKY 291

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
           R+IID IR   PD +IS+D IVGFPGET+  F  T+ LV+ I + Q  +  YSPR GTP 
Sbjct: 292 RRIIDTIRDYMPDASISADAIVGFPGETEAQFENTLKLVEDIEFDQLNTAAYSPRPGTPA 351

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSPW 434
           +    Q+ E VK++RL  L   +  +  + +    G+I EVL+E ++ K+  +++GR+  
Sbjct: 352 ALWENQLSEEVKSDRLQRLNHLVSIKAAARSQRYFGRIEEVLVEDQNPKDSSQVMGRTRG 411

Query: 435 LQSVVLNSK-NHNIGDIIKVRITDVKISTLYGELVV 469
            +    +   N   G ++KV+IT+V+  +L GE + 
Sbjct: 412 NRLTFFSGDINQLKGQLVKVKITEVRAFSLTGEALT 447


>gi|331697733|ref|YP_004333972.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Pseudonocardia dioxanivorans CB1190]
 gi|326952422|gb|AEA26119.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Pseudonocardia dioxanivorans CB1190]
          Length = 490

 Score =  313 bits (803), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 176/447 (39%), Positives = 265/447 (59%), Gaps = 40/447 (8%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           + +++YGCQMNV+DS RM  +  S GY R  + DDAD++VLNTC +RE A  K+Y  LG 
Sbjct: 5   YTIRTYGCQMNVHDSERMAGLLESAGYVRAEATDDADVVVLNTCAVRENADNKLYGNLGH 64

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           +   K +R      + + V GC+AQ + + I+ ++P V+VV G      LP LLERAR  
Sbjct: 65  LAPRKAARPG----MQIAVGGCLAQKDRDTIVAKAPWVDVVFGTHNVGALPTLLERARHN 120

Query: 147 KRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           +R  V+   S+E     L        R+     +++I  GC+  CTFC+VP  RG E  R
Sbjct: 121 ERAEVEIRESLEVFPSTLPA-----RRESAYAGWVSISVGCNNTCTFCIVPSLRGKERDR 175

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLR 264
               V+ E   L  +GV E+TLLGQNVNA+   G++ G++  FS LL +  +++GL R+R
Sbjct: 176 RPGDVLAEVSALAADGVLEVTLLGQNVNAY---GVEFGDREAFSKLLRACGDVEGLERVR 232

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +T+ HPR+ S  +I A  +   + P LH+P+QSGSDR+L+ M R + +  +  I+D +R 
Sbjct: 233 FTSPHPREFSSDVIAAMAETPNVCPQLHMPLQSGSDRVLREMRRSYRSSRFLAILDEVRG 292

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             PD AIS+D IVGFPGET++DFRAT+D+V++  +AQAF+F+YSPR GTP + + +Q+ +
Sbjct: 293 SIPDAAISTDIIVGFPGETEEDFRATLDVVERARFAQAFTFQYSPRPGTPAATLPDQLPK 352

Query: 385 NV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-------------GKL 428
            V   + ERL+ LQ+++  +Q   N A  G+++EVL+      K             G+L
Sbjct: 353 AVVQERYERLVELQERISWEQ---NRALEGRVVEVLVSTGEGRKDSATRRLSGRARDGRL 409

Query: 429 VGRSPWLQSVVLNSKNHNIGDIIKVRI 455
           V  +P    V         GD++ VR+
Sbjct: 410 VHFAPGAAPV-------RPGDVVTVRV 429


>gi|15895113|ref|NP_348462.1| Fe-S oxidoreductase [Clostridium acetobutylicum ATCC 824]
 gi|81530267|sp|Q97I18|MIAB_CLOAB RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|15024813|gb|AAK79802.1|AE007692_10 Predicted Fe-S oxidoreductase, YMCB B.subtilis ortholog
           [Clostridium acetobutylicum ATCC 824]
 gi|325509252|gb|ADZ20888.1| Fe-S oxidoreductase [Clostridium acetobutylicum EA 2018]
          Length = 441

 Score =  313 bits (802), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 178/446 (39%), Positives = 268/446 (60%), Gaps = 15/446 (3%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           FF++++GCQMN  DS ++  M     YE  ++ +DADLI+ NTC +RE A  KVY  LG 
Sbjct: 7   FFIETWGCQMNAEDSEKLAGMLKEMKYEATDNREDADLIIFNTCCVRENAELKVYGNLGT 66

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAE--GEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           ++ LK+ +     +L++ V GC+ Q     E I +R P V++V+G       P+ L++  
Sbjct: 67  LKKLKDKK----PNLIITVCGCMMQQRDMAEHIKKRFPFVDIVMGTHNTQMFPQYLKKVE 122

Query: 145 FGKRVVDTDYSVEDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             +  V     + DK E   IV+G    R   + AF+TI  GC+ FCT+C+VPY RG E 
Sbjct: 123 NERTSV---VEIWDKEE--GIVEGMPIYRSYDMKAFVTIMYGCNNFCTYCIVPYVRGRER 177

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR    + +E ++L+  G  EITLLGQNVN++ GK LD E+  F+ LL  L+ I+GL+R+
Sbjct: 178 SRKPEDIENEIKELVKKGYKEITLLGQNVNSY-GKSLD-EEMNFALLLRRLNNIEGLLRI 235

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+ TSHP+D++D +I A  D D +  ++HLPVQSGS  IL  MNR +T  +Y  ++++I+
Sbjct: 236 RFMTSHPKDLTDDVIAAIADCDKVCEHIHLPVQSGSTTILNKMNRNYTREDYINLVNKIK 295

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           S   ++AI++D IVGFPGET++DF  T+ LV ++ Y  AF+F YS R GTP +    Q+ 
Sbjct: 296 SGIKNVAITTDIIVGFPGETEEDFEDTLSLVKEVEYDSAFTFLYSIREGTPAAKYENQIP 355

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLVGRSPWLQSVVLNS 442
           + VK +R   L + +       N    G+I+E+L+E   K  G KL+GR+   + V    
Sbjct: 356 DEVKHKRFNKLLEAVNLISEKKNKEYEGKIVEILVEGKSKNDGSKLMGRTRTGKLVNFEG 415

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
              +IG +I V+IT  +  +L GE V
Sbjct: 416 LESSIGKLINVKITKAQAFSLVGEEV 441


>gi|298493062|ref|YP_003723239.1| MiaB family RNA modification protein ['Nostoc azollae' 0708]
 gi|298234980|gb|ADI66116.1| RNA modification enzyme, MiaB family ['Nostoc azollae' 0708]
          Length = 453

 Score =  313 bits (802), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 184/454 (40%), Positives = 273/454 (60%), Gaps = 23/454 (5%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +R+ + ++GCQMN  DS RM  +    G+E     +DA++I+ NTC IRE A +KVYS+L
Sbjct: 5   RRYHITTFGCQMNKADSERMAGILEKMGFEWSEDPNDANVILYNTCTIRENAEQKVYSYL 64

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR    +  R  E  DL +VVAGCVAQ EGE +LRR P +++V+GPQ   RL +LLE   
Sbjct: 65  GR----QAKRKHERPDLTLVVAGCVAQQEGEALLRRVPELDLVMGPQHANRLEDLLESVF 120

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRG--VTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            G +VV T        E + I++     +R   VTA++ +  GC++ CT+CVVP  RG+E
Sbjct: 121 DGNQVVAT--------EEVHILEDITQPRRDSQVTAWVNVIYGCNERCTYCVVPNVRGVE 172

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC------TFSDLLYSLSE 256
            SR+ + +  E  +L   G  E+TLLGQN++A+ G+ L G         T +DLLY + +
Sbjct: 173 QSRTPTAIRAEMEELGRKGYKEVTLLGQNIDAY-GRDLPGTTPEGRHLHTLTDLLYYVHD 231

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           + G+ RLR+ TSHPR  ++ LIKA  +L  +  + H+P QSG ++ILK M+R +T  +YR
Sbjct: 232 VPGIERLRFATSHPRYFTERLIKACAELPKVCEHFHIPFQSGDNQILKGMSRGYTHEKYR 291

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
           +IID IR   PD +IS D IVGFPGE ++ F  T+ LVD IG+    +  YSPR GTP +
Sbjct: 292 RIIDTIRRYMPDASISGDAIVGFPGEREEQFENTLKLVDDIGFDLLNTAAYSPRPGTPAA 351

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSPWL 435
               Q+ E VK+ERL  L   +  +    +    G++ EVL+E ++ K+  +++GR+   
Sbjct: 352 LWDNQLSEEVKSERLQRLNHLVNVKAAERSQRYFGRVEEVLVEDQNTKDNTQVMGRTGGN 411

Query: 436 QSVVLNSK-NHNIGDIIKVRITDVKISTLYGELV 468
           +        N   G I+KV+IT+V+  +L GE +
Sbjct: 412 RLTFFTGDINELKGQIVKVKITEVRPFSLTGEPI 445


>gi|219854806|ref|YP_002471928.1| hypothetical protein CKR_1463 [Clostridium kluyveri NBRC 12016]
 gi|219568530|dbj|BAH06514.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 454

 Score =  313 bits (801), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 170/445 (38%), Positives = 266/445 (59%), Gaps = 15/445 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + FF+ +YGCQMN  DS ++  +    GY+R  +   ADLI+ NTC +RE A  KVY  L
Sbjct: 18  KSFFISTYGCQMNEEDSEKLSGILKKMGYKRAENKLSADLIIFNTCCVRENAELKVYGNL 77

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G ++ LK  R     +L++ + GC+ Q +G  E+++++ P V+++ G    Y+ PE L R
Sbjct: 78  GALKKLKKQR----PELIIALCGCMMQQKGMAEKVIKKFPFVDIIFGTHNAYKFPEYLNR 133

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
                  V     ++DK +   IV+G   +R+  V AF+TI  GC+ FC +C+VPY RG 
Sbjct: 134 VNHQNVSV---IEIQDKED--GIVEGVPIDRESSVKAFVTIMYGCNNFCAYCIVPYVRGR 188

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR    + +E ++L+  G  E+TLLGQNVN++ GK L+  +  FS+LL  ++ + G+ 
Sbjct: 189 ERSRKPEDIENEIKELVSKGYKEVTLLGQNVNSY-GKNLN-PRVNFSELLRRINNVDGIE 246

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+ TSHP+D++D +I    + D +  ++HLPVQSGS RILK MNR ++  +Y  ++  
Sbjct: 247 RIRFMTSHPKDLTDDVIDVISECDKICEHIHLPVQSGSTRILKKMNRNYSKEQYLALVSE 306

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I+   PD +I++D IVGFPGET++DF  T++L + + +  AF+F YS R GTP   + EQ
Sbjct: 307 IKHKIPDASITTDIIVGFPGETEEDFEETLNLAEGVEFDSAFTFIYSKREGTPAYKIEEQ 366

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVL 440
           + ++VK ER   L + + +     N    G+I EVL+E   K +  KL+GR+   + V  
Sbjct: 367 ISDDVKHERFNRLVEVINKSAAKKNKVYEGRIEEVLVEGPSKNDSTKLMGRTRTGKLVNF 426

Query: 441 NSKNHNIGDIIKVRITDVKISTLYG 465
                 IG+++KV IT     +L G
Sbjct: 427 QGDKAFIGELVKVEITKATSFSLLG 451


>gi|282862292|ref|ZP_06271354.1| RNA modification enzyme, MiaB family [Streptomyces sp. ACTE]
 gi|282562631|gb|EFB68171.1| RNA modification enzyme, MiaB family [Streptomyces sp. ACTE]
          Length = 497

 Score =  313 bits (801), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 182/454 (40%), Positives = 263/454 (57%), Gaps = 22/454 (4%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERV--NSMDDADLIVLNTCHIREKAAEKV 80
           V + + V++YGCQMNV+DS R+  +    GY R    S  DAD++V NTC +RE A  K+
Sbjct: 3   VQKSYEVRTYGCQMNVHDSERLSGLLEDAGYVRAPEGSDGDADVVVFNTCAVRENADNKL 62

Query: 81  YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140
           Y  LGR+  +K  R      + + V GC+AQ + + I+RR+P V+VV G     +LP LL
Sbjct: 63  YGNLGRLAPMKTKRP----GMQIAVGGCLAQKDRDTIVRRAPWVDVVFGTHNIGKLPVLL 118

Query: 141 ERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           ERAR  +   V+   S+E     L        R+    A+++I  GC+  CTFC+VP  R
Sbjct: 119 ERARVQEEAQVEIAESLEAFPSTLPT-----RRESAYAAWVSISVGCNNTCTFCIVPALR 173

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIK 258
           G E  R    ++ E   L+  GV EITLLGQNVNA+   G D G++  FS LL +   I+
Sbjct: 174 GKEKDRRTGDILAEIEALVAEGVSEITLLGQNVNAY---GSDIGDREAFSKLLRACGTIE 230

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           GL R+R+T+ HPRD +D +I A  +   +MP LH+P+QSGSDRILK+M R +    +  I
Sbjct: 231 GLERVRFTSPHPRDFTDDVIAAMAETPNVMPQLHMPMQSGSDRILKAMRRSYRQERFLGI 290

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           I+++R+  PD AIS+D IVGFPGET++DF  TM  V +  +A AF+F+YS R GTP ++M
Sbjct: 291 IEKVRAAMPDAAISTDIIVGFPGETEEDFEQTMHAVREARFANAFTFQYSKRPGTPAADM 350

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKG---KLVGRSPW 434
             Q+ + V  ER + L     E     N   VG+ ++V++ E  G++ G   +L GR+P 
Sbjct: 351 EGQIPKEVVQERYMRLSALQEEISWEENKKQVGRTLDVMVAEGEGRKDGATHRLSGRAPD 410

Query: 435 LQSVVLNSKNHNI--GDIIKVRITDVKISTLYGE 466
            + V       ++  GD++ V IT      L  E
Sbjct: 411 NRLVHFTKPAQDVRPGDVVTVDITYAAPHHLLAE 444


>gi|218437115|ref|YP_002375444.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Cyanothece sp.
           PCC 7424]
 gi|229890508|sp|B7K993|MIAB_CYAP7 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|218169843|gb|ACK68576.1| RNA modification enzyme, MiaB family [Cyanothece sp. PCC 7424]
          Length = 454

 Score =  313 bits (801), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 182/454 (40%), Positives = 277/454 (61%), Gaps = 23/454 (5%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +R+ + ++GCQMN  DS RM  +    GY+  +  ++ADL++ NTC IR+ A +KVYS+L
Sbjct: 6   RRYHITTFGCQMNKADSERMAGILEDIGYQWSDDPNEADLVLYNTCTIRDNAEQKVYSYL 65

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR    +  R  E  DL ++VAGCVAQ EGE++LRR P +++V+GPQ   RL +LL+   
Sbjct: 66  GR----QAKRKHEKPDLTLIVAGCVAQQEGEKLLRRVPELDLVMGPQHANRLQDLLQEVL 121

Query: 145 FGKRVVDTD--YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            G +VV T+  + VED  +          R+  VTA++ +  GC++ CT+CVVP  RG+E
Sbjct: 122 AGNQVVATEPIHIVEDITKP--------RRESTVTAWVNVIYGCNERCTYCVVPNVRGVE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG------EKCTFSDLLYSLSE 256
            SR+   +  E  +L   G  EITLLGQN++A+ G+ L G       + T +DLLY +++
Sbjct: 174 QSRTPQAIRAEMVELGQQGYKEITLLGQNIDAY-GRDLPGVTESGRHQHTLTDLLYYVND 232

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           + G+ R+R+ TSHPR  ++ LI A  +L  +  + H+P QSG + +LK+M R +T   YR
Sbjct: 233 VPGIERIRFATSHPRYFTERLIVACKELPKVCEHFHIPFQSGDNDLLKAMKRGYTHERYR 292

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
           QIID+IR   PD +IS+D IVGFPGET+  F  T+ LV+ IG+ Q  +  YSPR GTP +
Sbjct: 293 QIIDKIREYMPDASISADAIVGFPGETEAQFENTLKLVEDIGFDQLNTAAYSPRPGTPAA 352

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWL 435
               Q+ E VK++RL  L   +  +    +   +G+I EVL+E  + K+  +++GR+   
Sbjct: 353 LWDNQLSEEVKSDRLQRLNHLVAIKAAERSQRYLGRIEEVLVEDVNPKDLTQVMGRTRGN 412

Query: 436 QSVVLNSK-NHNIGDIIKVRITDVKISTLYGELV 468
           +        N   G +++V+ITDV+  +L GE V
Sbjct: 413 RLTFFTGDINQLKGQLVEVKITDVRAFSLTGEPV 446


>gi|153954198|ref|YP_001394963.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Clostridium
           kluyveri DSM 555]
 gi|146347079|gb|EDK33615.1| Conserved hypothetical protein [Clostridium kluyveri DSM 555]
          Length = 444

 Score =  312 bits (800), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 170/445 (38%), Positives = 266/445 (59%), Gaps = 15/445 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + FF+ +YGCQMN  DS ++  +    GY+R  +   ADLI+ NTC +RE A  KVY  L
Sbjct: 8   KSFFISTYGCQMNEEDSEKLSGILKKMGYKRAENKLSADLIIFNTCCVRENAELKVYGNL 67

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G ++ LK  R     +L++ + GC+ Q +G  E+++++ P V+++ G    Y+ PE L R
Sbjct: 68  GALKKLKKQR----PELIIALCGCMMQQKGMAEKVIKKFPFVDIIFGTHNAYKFPEYLNR 123

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
                  V     ++DK +   IV+G   +R+  V AF+TI  GC+ FC +C+VPY RG 
Sbjct: 124 VNHQNVSV---IEIQDKED--GIVEGVPIDRESSVKAFVTIMYGCNNFCAYCIVPYVRGR 178

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR    + +E ++L+  G  E+TLLGQNVN++ GK L+  +  FS+LL  ++ + G+ 
Sbjct: 179 ERSRKPEDIENEIKELVSKGYKEVTLLGQNVNSY-GKNLN-PRVNFSELLRRINNVDGIE 236

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+ TSHP+D++D +I    + D +  ++HLPVQSGS RILK MNR ++  +Y  ++  
Sbjct: 237 RIRFMTSHPKDLTDDVIDVISECDKICEHIHLPVQSGSTRILKKMNRNYSKEQYLALVSE 296

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I+   PD +I++D IVGFPGET++DF  T++L + + +  AF+F YS R GTP   + EQ
Sbjct: 297 IKHKIPDASITTDIIVGFPGETEEDFEETLNLAEGVEFDSAFTFIYSKREGTPAYKIEEQ 356

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVL 440
           + ++VK ER   L + + +     N    G+I EVL+E   K +  KL+GR+   + V  
Sbjct: 357 ISDDVKHERFNRLVEVINKSAAKKNKVYEGRIEEVLVEGPSKNDSTKLMGRTRTGKLVNF 416

Query: 441 NSKNHNIGDIIKVRITDVKISTLYG 465
                 IG+++KV IT     +L G
Sbjct: 417 QGDKAFIGELVKVEITKATSFSLLG 441


>gi|257126661|ref|YP_003164775.1| RNA modification enzyme, MiaB family [Leptotrichia buccalis
           C-1013-b]
 gi|257050600|gb|ACV39784.1| RNA modification enzyme, MiaB family [Leptotrichia buccalis
           C-1013-b]
          Length = 441

 Score =  312 bits (800), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 169/447 (37%), Positives = 269/447 (60%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +R  + +YGCQMNV +S +M+ M  + GY     +++ DL+ LNTC +RE AA KVY  L
Sbjct: 3   KRATIITYGCQMNVNESAKMKQMLQTMGYNMTEDIENTDLVFLNTCTVREGAAVKVYGKL 62

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           G ++ +K  +    G +++ V GC+AQ   +E ++++P V++V+G Q   R+P++LER  
Sbjct: 63  GDLKRIKEEK---DGKMIIGVTGCLAQEVRDEFIKKTPYVDLVLGNQNIGRIPDILERIE 119

Query: 145 FGKRVVDTD-YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            G+   DT    V+D+ E  + VD  +     + A ++I  GC+ +CTFC+VPY RG+E 
Sbjct: 120 SGE---DTHIVMVDDEDELPTRVDADFGDD--IVASISITYGCNNYCTFCIVPYVRGMER 174

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           S  L++++ +  +    G  EI  LGQNVN++     +G+   F++LL   + ++G   +
Sbjct: 175 SVPLNEIIRDVEQYTKKGYKEILFLGQNVNSYGSDFANGQD-NFAELLEQSANVEGDFWI 233

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           +Y + HP+D SD +I        +   LHLP+QSGS +IL SMNR +T  E+  +  +I+
Sbjct: 234 KYVSPHPKDFSDEVIDVIARNPKIARMLHLPLQSGSTKILDSMNRGYTKEEFIALAKKIK 293

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              PDI +++D IVGFPGETD+DF+ TMD+V+++G+  AF F YS R GTP + M EQVD
Sbjct: 294 EKIPDIGLTTDIIVGFPGETDEDFQDTMDVVNEVGFENAFMFMYSKRTGTPAATMEEQVD 353

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVLNS 442
           E  K ERL  L +    +    +   +GQ ++VL+E   ++  + L GRS   + ++  S
Sbjct: 354 EQTKNERLQQLMRLQNMKAKEESQKYLGQTVKVLVEGPSRKNPEMLTGRSSTHKIILFKS 413

Query: 443 KNHNI-GDIIKVRITDVKISTLYGELV 468
              ++ G  + V+I D K  TLYGE+V
Sbjct: 414 DRKDLKGQFVNVKIYDAKTWTLYGEMV 440


>gi|188996756|ref|YP_001931007.1| RNA modification enzyme, MiaB family [Sulfurihydrogenibium sp.
           YO3AOP1]
 gi|229891027|sp|B2V930|MIAB_SULSY RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|188931823|gb|ACD66453.1| RNA modification enzyme, MiaB family [Sulfurihydrogenibium sp.
           YO3AOP1]
          Length = 437

 Score =  312 bits (800), Expect = 7e-83,   Method: Compositional matrix adjust.
 Identities = 171/453 (37%), Positives = 279/453 (61%), Gaps = 30/453 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +F++K++GCQMNV DS +M  +  + GY    + ++AD+I++NTC +REK  +KV S LG
Sbjct: 2   KFYIKTFGCQMNVNDSEKMAGILQTLGYTPTENWEEADVILVNTCSVREKPDQKVLSALG 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
             + +K    K   + ++ V GC+AQ  G EI +++P +++V G    + LP LLE A+ 
Sbjct: 62  EFKKVK----KHNPNAVIGVCGCLAQRAGYEIYQKAPFIDIVFGTTNIHHLPNLLEEAKS 117

Query: 146 GKRVV------DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           G + +      D + ++ D+F  +        R+   TAF+T+  GCDK CT+C+VP TR
Sbjct: 118 GNKAIEILEEIDENENLLDQFPTV--------RENKYTAFVTVIRGCDKKCTYCIVPTTR 169

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G E SR +  ++ E + L+++GV EI L+GQNV A+   G D     F +LL +++E+ G
Sbjct: 170 GRERSRRIGDILREVQYLVEDGVKEIHLIGQNVTAY---GKDFGDVKFWELLKAVAEVDG 226

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           + R+R+TT HPRD+ +  IK   DL  +   LHLP+Q+GSDRIL++M+R +T  EY Q I
Sbjct: 227 VERIRFTTGHPRDLDEDTIKVMADLPQICEALHLPIQAGSDRILQAMDRGYTQKEYLQKI 286

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN-- 377
           + ++   P+IA+S+D IVGFPGET +D+  T+ ++ ++ Y Q F+FKYSPR GTP ++  
Sbjct: 287 ELLKKYIPNIALSTDIIVGFPGETYEDYLETVKVIKEVEYDQVFAFKYSPRPGTPAADLP 346

Query: 378 MLEQVDE-NVKAERLLCLQKKLR-EQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWL 435
           M E  +E + +   L+ LQK +  ++ + + D    +I+E+L+E+  +E  KLVGR+   
Sbjct: 347 MTESPEELSKRLNDLINLQKDITFKKNLEYQD----KIVEILVEEINQE-NKLVGRTRTN 401

Query: 436 QSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           + V        +G ++ V+I  V   +L G ++
Sbjct: 402 KLVYAEGSPEYLGKLVNVKIEKVNRFSLEGSII 434


>gi|226312967|ref|YP_002772861.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Brevibacillus
           brevis NBRC 100599]
 gi|226095915|dbj|BAH44357.1| probable tRNA methylthiotransferase [Brevibacillus brevis NBRC
           100599]
          Length = 503

 Score =  312 bits (799), Expect = 8e-83,   Method: Compositional matrix adjust.
 Identities = 179/448 (39%), Positives = 266/448 (59%), Gaps = 15/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +R+ V++YGCQMN +DS  +  +  + GY   +S++DAD+I+ NTC IRE A +KV+  L
Sbjct: 62  KRYHVRTYGCQMNEHDSETISGILQAMGYTSSDSVEDADVILFNTCAIRENAEDKVFGEL 121

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G ++ LKN+      +L++ V GC++Q E   ++IL+    V+++ G    +RLPELL  
Sbjct: 122 GHMKRLKNN----NPNLILGVCGCMSQEEKVVKKILKSYQQVDLIFGTHNIHRLPELLRD 177

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT-AFLTIQEGCDKFCTFCVVPYTRGI 201
           A F K +V   +S E       IV+     + G T  ++ I  GCDKFCT+C+VPYTRG 
Sbjct: 178 AMFSKEMVIEVWSKEG-----DIVENMPKLREGNTKGWVNIMYGCDKFCTYCIVPYTRGK 232

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR    V+ E R L   G  EI LLGQNVNA+ GK  +  K  F DL+  + +I  + 
Sbjct: 233 ERSRRPEDVIAEVRDLARQGFKEIMLLGQNVNAY-GKDFEDIKYGFGDLMDEIRKID-IP 290

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHPRD  D LI+       L+  +HLPVQSGS  +LK M R+++   Y +++ +
Sbjct: 291 RVRFTTSHPRDFDDHLIEVLAKGGNLVEQIHLPVQSGSTEVLKRMARKYSREHYLELVRK 350

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I+   P++++S+D IVGFPGETD+ F  T+ +V+++ Y  A++F YSPR GTP + M + 
Sbjct: 351 IKDAIPNVSLSTDIIVGFPGETDEQFEDTISMVEEVKYDFAYTFIYSPREGTPAAVMEDN 410

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440
           V   VK  RL  L + L    +  N     Q++EVL+E   +   + L GR+   + V  
Sbjct: 411 VPMEVKKARLYRLNEVLAGIALEQNKKLQDQVVEVLVEGESRTNAEVLAGRTRTNKLVHF 470

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 IG  + ++ITD K  TL+GELV
Sbjct: 471 TGDKSLIGQYVHIKITDAKTWTLHGELV 498


>gi|225849364|ref|YP_002729528.1| (dimethylallyl)adenosine tRNA methylthiotransferase
           [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225643388|gb|ACN98438.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Sulfurihydrogenibium
           azorense Az-Fu1]
          Length = 437

 Score =  312 bits (799), Expect = 8e-83,   Method: Compositional matrix adjust.
 Identities = 173/451 (38%), Positives = 281/451 (62%), Gaps = 28/451 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +++++++GCQMNV DS +M  +  + GYE      +AD+I++NTC +REK  +KV S LG
Sbjct: 2   KYYIRTFGCQMNVNDSEKMAGILKTLGYEPAQDWKEADVILVNTCSVREKPDQKVLSALG 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
             + +K    K+  + ++ V GC+AQ  G EIL+++P +++V G    + LP+LLE A+ 
Sbjct: 62  EFKKIK----KDKPNAIIGVCGCLAQRAGYEILQKAPFIDMVFGTTNIHHLPQLLEEAKS 117

Query: 146 GKRVV------DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           G + V      D + ++ D+F  +        R+   TAF+T+  GCDK CT+C+VP TR
Sbjct: 118 GNKAVEILEEIDENENLLDQFPTV--------RENKYTAFVTVIRGCDKKCTYCIVPTTR 169

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G E SR +  ++ E + L+++GV EI L+GQNV A+ GK L   K  F +LL +++ + G
Sbjct: 170 GKERSRRIGDILREVQFLVEDGVKEIHLIGQNVTAY-GKDLGDVK--FWELLQAVASVPG 226

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           + R+R+TT HPRD+ +  IK   DL  +   LHLP+Q+GSD++L++M+R +T  EY Q I
Sbjct: 227 VERIRFTTGHPRDLDEDTIKVMADLPQVCEALHLPIQAGSDKVLQAMDRGYTQKEYLQKI 286

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM- 378
           D ++   PDIA+S+D IVGFPGET +D+  T+ ++ ++ Y Q F+FKYSPR GTP +++ 
Sbjct: 287 DLLKKYIPDIALSTDIIVGFPGETYEDYLETVKVIKEVEYDQVFAFKYSPRPGTPAADIP 346

Query: 379 LEQVDENVKA--ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQ 436
           + +  E +      L+ +QK +  ++   N +  G+ +EVLIE+   E+GKL GR+   +
Sbjct: 347 MTESPETISKWLNDLINIQKDITFKK---NLSYEGKTVEVLIEEVN-EEGKLTGRTRTNK 402

Query: 437 SVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
            V ++     +G I+ V+I  V   +L G +
Sbjct: 403 LVHVDGPQEYVGYIVNVKIEKVNRFSLEGRI 433


>gi|255066997|ref|ZP_05318852.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Neisseria sicca ATCC
           29256]
 gi|255048822|gb|EET44286.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Neisseria sicca ATCC
           29256]
          Length = 496

 Score =  312 bits (799), Expect = 8e-83,   Method: Compositional matrix adjust.
 Identities = 162/375 (43%), Positives = 233/375 (62%), Gaps = 7/375 (1%)

Query: 96  KEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-ERARFGKRVVDTDY 154
           ++  DL++ VAGCVA  EGE I++R+P V+VV GPQT +RLP+++ ++   G   VD  +
Sbjct: 125 RKNPDLIIGVAGCVASQEGENIIKRAPYVDVVFGPQTLHRLPKMIVDKETSGLSQVDISF 184

Query: 155 SVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEA 214
              +KF+ L        R  G  AF++I EGC K+C+FCVVPYTRG E SR L+ V+ E 
Sbjct: 185 PEIEKFDHLPPA-----RVEGGAAFVSIMEGCSKYCSFCVVPYTRGEEFSRPLNDVLTEI 239

Query: 215 RKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMS 274
             L   GV EI LLGQNVNA+RG+  DGE C F+ LL  + EI G+ R+R+TTSHPR+ +
Sbjct: 240 ANLAQQGVKEINLLGQNVNAYRGEMEDGEICDFATLLRIVHEIPGIERMRFTTSHPREFT 299

Query: 275 DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSD 334
           D +I+ + DL  L+ +LHLP+QSGSDR+L +M R +TA EY+ II ++R++RPD+ +SSD
Sbjct: 300 DSIIECYRDLPKLVSHLHLPIQSGSDRVLSAMKRGYTALEYKSIIRKLRAIRPDLCLSSD 359

Query: 335 FIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCL 394
           FIVGFPGET+ +F  T+ LV  I +  +F F YSPR GTP +N+ +      K  RL  L
Sbjct: 360 FIVGFPGETEREFEQTLKLVKDIAFDLSFVFIYSPRPGTPAANLPDDTPHAEKVRRLEAL 419

Query: 395 QKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKV 453
            + +  +    N   +G +   L+E    K+  +L  R+   + V        I  +I +
Sbjct: 420 NEVIEAETARINQTMIGTVQRCLVEGISKKDPDQLQARTANNRVVNFTGTPDMINQMIDL 479

Query: 454 RITDVKISTLYGELV 468
            IT+    +L G+ V
Sbjct: 480 EITEAYTFSLRGKPV 494


>gi|294500858|ref|YP_003564558.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus megaterium QM
           B1551]
 gi|294350795|gb|ADE71124.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus megaterium QM
           B1551]
          Length = 520

 Score =  311 bits (798), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 177/448 (39%), Positives = 260/448 (58%), Gaps = 15/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++F++++YGCQMN +D+  M  +F   GYE  +S++DA +I+LNTC IRE A  KV+  L
Sbjct: 77  RKFYIRTYGCQMNEHDTEVMAGIFLGLGYEPTDSVEDAHVILLNTCAIRENAENKVFGEL 136

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G ++ LK  R     +LL+ V GC++Q E    +IL++   V+++ G    +RLP +L  
Sbjct: 137 GHLKALKRER----PELLIGVCGCMSQEESVVNKILQKHQHVDMIFGTHNIHRLPHILNE 192

Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           A   K +V   +S E D  E L        RK  V A++ I  GCDKFCT+C+VPYTRG 
Sbjct: 193 AYLAKEMVIEVWSKEGDVIENLPRA-----RKGSVKAWVNIMYGCDKFCTYCIVPYTRGK 247

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR    ++ E R L   G  EITLLGQNVNA+ GK  +       DL+  + +I  + 
Sbjct: 248 ERSRRPEDIIQEVRHLAAQGYKEITLLGQNVNAY-GKDFEDMTYGLGDLMDEIRKI-DVA 305

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHPRD  D LI+       L+ ++HLPVQSGS  ILK M R+++   Y +++ +
Sbjct: 306 RIRFTTSHPRDFDDRLIEVLAKGGNLVDHIHLPVQSGSSDILKIMARKYSREHYLELVRK 365

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I+   P  ++++D IVGFP ETD+ F  TM L  ++ +  A++F YSPR GTP + M + 
Sbjct: 366 IKEAIPTASLTTDIIVGFPNETDEQFEETMSLYREVEFDSAYTFIYSPREGTPAAKMQDN 425

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440
           V   VK ERL  L   + E          G+++EVL+E   K   + L G +   + V  
Sbjct: 426 VPMEVKKERLQRLNALVNEISAKKLKEYEGKVVEVLVEGESKNNPEVLAGYTEKSKLVNF 485

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
            +    IG ++KV++T  K  TL GE+V
Sbjct: 486 KAPKSVIGQLVKVKVTKAKTWTLNGEMV 513


>gi|164688057|ref|ZP_02212085.1| hypothetical protein CLOBAR_01702 [Clostridium bartlettii DSM
           16795]
 gi|164602470|gb|EDQ95935.1| hypothetical protein CLOBAR_01702 [Clostridium bartlettii DSM
           16795]
          Length = 482

 Score =  311 bits (798), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 172/453 (37%), Positives = 282/453 (62%), Gaps = 19/453 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + +F++++GCQMN +DS ++  M  + GYE     D+ADLI+ NTC +RE A  KVY  L
Sbjct: 39  KSYFIQTFGCQMNEHDSEKLGAMLNAMGYEPSLMADNADLIIYNTCAVRENAELKVYGNL 98

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G ++ +K    +   +L + V GC+ Q     +EI  +   V++V G    Y+ PELL  
Sbjct: 99  GHLKLIK----RRNPNLKIAVCGCMMQQPAIVKEIKAKYKHVDLVFGTHNLYKFPELLSE 154

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           +     ++   + V+ +     +V+G   +RK  + AF+ I  GC+ FCT+C+VPYTRG 
Sbjct: 155 SMSSDSILIDVWDVDGE-----VVEGLRSDRKFELKAFVNIMYGCNNFCTYCIVPYTRGR 209

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE-KCTFSDLLYSLSEIKGL 260
           E SR    +++E ++L+ NG  E+TLLGQNV+++ GK L+ E + TF++LL +++EI GL
Sbjct: 210 ERSRRPEDIMNEIKELVANGTKEVTLLGQNVDSY-GKTLEEEDRMTFAELLRAVNEIDGL 268

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+ TSHP+D+SD +I A  D D +  +LHLPVQ GS ++LK MNR ++  +Y +I++
Sbjct: 269 ERIRFMTSHPKDISDEVIYAMRDCDKVCEFLHLPVQCGSTKLLKKMNRHYSKEDYLRIVE 328

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           + ++  P+IA S+D +VGFPGET++D   T+D++ ++ Y  AF+F YS R GTP + M +
Sbjct: 329 KAKAEVPNIAFSTDIMVGFPGETEEDVEDTLDVIRQVRYDNAFTFIYSKRTGTPAAKMED 388

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVV 439
           Q+ E+VK +R   + + + E     N     +++E+L+E   K +  K  GR+   + V 
Sbjct: 389 QIPEDVKHKRFNRVLELVNEISKENNTTHQDEVVEILVEGKSKTDDTKFTGRTRQNKLVN 448

Query: 440 LNSKNHN---IGDIIKVRITDVKIS-TLYGELV 468
            + KN +   IG ++ V+IT+  +S +L GE+V
Sbjct: 449 FSVKNPDADLIGKLVNVKITEAALSFSLNGEMV 481


>gi|326776162|ref|ZP_08235427.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Streptomyces cf. griseus XylebKG-1]
 gi|326656495|gb|EGE41341.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Streptomyces cf. griseus XylebKG-1]
          Length = 506

 Score =  311 bits (797), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 183/464 (39%), Positives = 272/464 (58%), Gaps = 29/464 (6%)

Query: 15  SQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERV--NSMDDADLIVLNTCHI 72
           S+ VD   V + + V++YGCQMNV+DS R+  +    GY R    S  DAD++V NTC +
Sbjct: 7   SEAVD---VQKSYEVRTYGCQMNVHDSERLSGLLEGAGYVRAPEGSDGDADVVVFNTCAV 63

Query: 73  REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT 132
           RE A  K+Y  LGR+  +K  R      + + V GC+AQ + + I++R+P V+VV G   
Sbjct: 64  RENADNKLYGNLGRLAPMKTKRP----GMQIAVGGCLAQKDRDTIVKRAPWVDVVFGTHN 119

Query: 133 YYRLPELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCT 191
             +LP LLERAR  +   ++   S+E     L        R+    A+++I  GC+  CT
Sbjct: 120 IGKLPVLLERARVQEEAQIEIAESLEAFPSTLPT-----RRESAYAAWVSISVGCNNTCT 174

Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDL 250
           FC+VP  RG E  R    ++ E   L+  GVCEITLLGQNVNA+   G D G++  FS L
Sbjct: 175 FCIVPALRGKEKDRRTGDILAEIEALVAEGVCEITLLGQNVNAY---GSDIGDREAFSKL 231

Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
           L +  +I+GL R+R+T+ HPRD +D +I A  +   +MP LH+P+QSGSD ILK+M R +
Sbjct: 232 LRACGKIEGLERVRFTSPHPRDFTDDVIAAMAETPNVMPQLHMPMQSGSDTILKAMRRSY 291

Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370
               +  II+++R+  P+ AIS+D IVGFPGET++DF  TM  V +  +A AF+F+YS R
Sbjct: 292 RQERFLGIIEKVRAAMPEAAISTDIIVGFPGETEEDFEQTMHAVREARFANAFTFQYSKR 351

Query: 371 LGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSF--NDACVGQIIEVLI-EKHGKEKG- 426
            GTP ++M  Q+ + V  ER + L     ++Q+S+  N   VG+ ++V++ E  G++ G 
Sbjct: 352 PGTPAADMDGQIPKEVVQERYMRLSA--LQEQISWDENKKQVGRTLDVMVAEGEGRKDGA 409

Query: 427 --KLVGRSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGE 466
             +L GR+P  + V        +  GD++ V IT      L  E
Sbjct: 410 TQRLSGRAPDNRLVHFTQPEKAVRPGDVVTVEITYAAPHHLLAE 453


>gi|332982488|ref|YP_004463929.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Mahella australiensis
           50-1 BON]
 gi|332700166|gb|AEE97107.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Mahella australiensis
           50-1 BON]
          Length = 443

 Score =  311 bits (796), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 176/451 (39%), Positives = 272/451 (60%), Gaps = 21/451 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++F + +YGCQMN +DS +M  +    GYE       AD+I+ NTC +RE A ++VY  +
Sbjct: 4   KKFTIVTYGCQMNEHDSEKMAGILSDMGYEWTEDKAGADIILFNTCCVREHAEQRVYGNI 63

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G ++ LK    +   DL++ V GC+ Q EG  +++ +  P V+++ G      LP+L++ 
Sbjct: 64  GMLKPLK----QVNPDLIIGVCGCMMQQEGMAQKLAQTFPFVDIIFGTHNLNELPKLIDE 119

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           A+  +  V   +  + +F+    +     R   V+A++T+  GC+ FCT+C+VPY RG E
Sbjct: 120 AKASRFTVVDIHEQDHEFDESMPI----RRASKVSAWVTVMYGCNNFCTYCIVPYVRGRE 175

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR    +V+E ++L D G  EITLLGQNVN++ GK  D EK  F+DLL  L +I+G+ R
Sbjct: 176 HSRRPDDIVNEVKELADQGYKEITLLGQNVNSY-GKDSD-EKVEFADLLRMLDDIEGVER 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP+D+SD LI A  D   +   LHLPVQSGS RIL+ MNR +T   Y +++++I
Sbjct: 234 IRFTTSHPKDLSDNLIYAMRDCKKVCHQLHLPVQSGSTRILRRMNRHYTKEGYLELVEKI 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           ++  PDIA+S+D IVGFPGETD+DF  T+D+V +  Y  A++F YS R GTP + + +  
Sbjct: 294 KANIPDIALSTDIIVGFPGETDEDFEDTLDVVRRAQYDLAYTFIYSKRSGTPAAKLEDPT 353

Query: 383 DENVKA---ERLLCLQKKL-REQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRSPWLQS 437
              +K    +RL+ LQ  + RE+    N    G ++EVL+E   +  KG+++GR+   + 
Sbjct: 354 PREIKQQRLQRLIDLQTAITREKNQRLN----GAVVEVLVEGPSRNGKGQMMGRTTGNKV 409

Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           V        IG ++ V IT+     L G L+
Sbjct: 410 VNFEGNASLIGKLVDVLITEPSTWFLNGRLM 440


>gi|304404333|ref|ZP_07385995.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Paenibacillus
           curdlanolyticus YK9]
 gi|304347311|gb|EFM13143.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Paenibacillus
           curdlanolyticus YK9]
          Length = 530

 Score =  311 bits (796), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 171/447 (38%), Positives = 265/447 (59%), Gaps = 14/447 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + + V ++GCQMN +DS  M+ +    GY        AD+I+LNTC IRE A +KV+  L
Sbjct: 87  KHYMVYTFGCQMNEHDSEVMKGLLEQMGYTPTEDRKLADVILLNTCAIRENAEDKVFGEL 146

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G ++ LK  R     +LL+ V GC++Q E     IL   P V++V G    +RLP LL+ 
Sbjct: 147 GHLKGLKRER----PNLLLGVCGCMSQEESVVGRILATHPFVDLVFGTHNIHRLPYLLQS 202

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           A F + +V   +S E       I++    ++ G+ A++ I  GCDKFCT+C+VPYTRG E
Sbjct: 203 AYFNQEMVVEVWSKEG-----DIIENLPKKREGMRAWVNIMYGCDKFCTYCIVPYTRGKE 257

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR  + ++ E R+L   G  E+TLLGQNVNA+ GK    +   F+DL+  +S+I  + R
Sbjct: 258 RSRLPADIIAEVRELARQGYKEVTLLGQNVNAY-GKDFTDDNYRFADLMADISQI-AIPR 315

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+ TSHPRD  D LI+       L+ ++HLPVQSGS  ILK M+R+++  ++  + +RI
Sbjct: 316 IRFMTSHPRDFDDHLIEVLAQGGNLVEHIHLPVQSGSSAILKRMSRKYSREQFLSLANRI 375

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           +   P++ +++D IVGFPGE+++ F  T+ LV ++G+  A++F YSPR GTP ++M + V
Sbjct: 376 KQAIPNVVLTTDIIVGFPGESEEQFEETLTLVREVGFDLAYTFIYSPREGTPAADMEDDV 435

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVLN 441
               K +RL  L + + EQ    ++  VGQ++EVL+E   K     L GR+   + V   
Sbjct: 436 PMETKKKRLSRLNELMAEQGRIGHEKLVGQVVEVLVEGESKNNANVLAGRTRTNKLVHFE 495

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                IG +I+VR+T+ +   +  E +
Sbjct: 496 GPKEWIGQLIQVRVTEAQTWYIKAEAI 522


>gi|309389296|gb|ADO77176.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Halanaerobium praevalens
           DSM 2228]
          Length = 443

 Score =  311 bits (796), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 174/446 (39%), Positives = 271/446 (60%), Gaps = 15/446 (3%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           + + +YGCQMN +DS R+  M    GY+  +  ++AD+I+LNTC IRE A  KV+  LG 
Sbjct: 7   YNIITYGCQMNKHDSERLAGMLEEMGYQPTDKYENADIILLNTCIIRENAELKVFGKLGE 66

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER-A 143
           ++  K    +E  DL++ + GC+ Q +   +E+ ++   V+++ G    + LP+L+ +  
Sbjct: 67  LKRYK----RENPDLIIGIGGCMMQQDEPVDEVYKKYRHVDLIFGTHNIHHLPDLINKIE 122

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           +   RVV+    V D+ E L I D    RK   +A+++I +GCD FCT+C+VPY RG E 
Sbjct: 123 KTRDRVVE----VWDEEEGL-IPDLPSQRKSEHSAWISIIQGCDNFCTYCIVPYVRGRER 177

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR L+ +V EA KL  +GV EITLLGQNVN++ G  L+ E  TF  LL  L++++ L R+
Sbjct: 178 SRPLTSIVKEAEKLAADGVKEITLLGQNVNSY-GNDLEKE-TTFPKLLAELNKVQKLKRI 235

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+ TSHPRD SD L++   +LD +  ++HLP+QSGS+++LK MNR +T   Y + +++IR
Sbjct: 236 RFMTSHPRDFSDELLEKIAELDKVANHIHLPIQSGSNKVLKQMNRGYTREYYIERVEKIR 295

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              P  ++S+DFIVGFPGET+ DF  T++LV ++ +  A++F YSPR GTP ++  +Q+D
Sbjct: 296 KEMPHASVSTDFIVGFPGETEADFEQTINLVKELNFDMAYTFIYSPRSGTPAASRKDQID 355

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GRSPWLQSVVLNS 442
           E VK +RL  L     +     N   +G   EVL+        K+  GR+   +      
Sbjct: 356 EEVKKKRLKTLMDLQNKISYDKNQKLIGSTQEVLVTGASDSNPKVYEGRTSTNKICFFEK 415

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
           +   IG+++ V+I   K  TL G ++
Sbjct: 416 REELIGELVNVKIEAAKSWTLDGTII 441


>gi|295706204|ref|YP_003599279.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus megaterium DSM
           319]
 gi|294803863|gb|ADF40929.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus megaterium DSM
           319]
          Length = 509

 Score =  311 bits (796), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 179/450 (39%), Positives = 262/450 (58%), Gaps = 19/450 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++F++++YGCQMN +D+  M  +F   GYE  +S++DA +I+LNTC IRE A  KV+  L
Sbjct: 66  RKFYIRTYGCQMNEHDTEVMAGIFLGLGYEPTDSVEDAHVILLNTCAIRENAENKVFGEL 125

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G ++ LK  R     +LL+ V GC++Q E    +IL++   V+++ G    +RLP +L  
Sbjct: 126 GHLKALKRER----PELLIGVCGCMSQEESVVNKILQKHQHVDMIFGTHNIHRLPHILNE 181

Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           A   K +V   +S E D  E L        RK  V A++ I  GCDKFCT+C+VPYTRG 
Sbjct: 182 AYLAKEMVIEVWSKEGDVIENLPRA-----RKGSVKAWVNIMYGCDKFCTYCIVPYTRGK 236

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS--DLLYSLSEIKG 259
           E SR    ++ E R L   G  EITLLGQNVNA+   G D E  T+   DL+  + +I  
Sbjct: 237 ERSRRPEDIIQEVRHLAAQGYKEITLLGQNVNAY---GKDFEDITYGLGDLMDEIRKI-D 292

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           + R+R+TTSHPRD  D LI+       L+ ++HLPVQSGS  ILK M R+++   Y +++
Sbjct: 293 VARIRFTTSHPRDFDDRLIEVLAKGGNLVDHIHLPVQSGSSDILKIMARKYSREHYLELV 352

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            +I+   P  ++++D IVGFP ETD+ F  TM L  ++ +  A++F YSPR GTP + M 
Sbjct: 353 RKIKEAIPTASLTTDIIVGFPNETDEQFEETMSLYREVEFDSAYTFIYSPREGTPAAKMQ 412

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSV 438
           + V   VK ERL  L   + E          G+++EVL+E   K   + L G +   + V
Sbjct: 413 DNVPMEVKKERLQRLNALVNEISAKKLKEYEGKVVEVLVEGESKNNPEVLAGYTEKSKLV 472

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468
              +    IG ++KV++T  K  TL GE+V
Sbjct: 473 NFKAPKSVIGQLVKVKVTKAKTWTLNGEMV 502


>gi|210621065|ref|ZP_03292450.1| hypothetical protein CLOHIR_00393 [Clostridium hiranonis DSM 13275]
 gi|210155049|gb|EEA86055.1| hypothetical protein CLOHIR_00393 [Clostridium hiranonis DSM 13275]
          Length = 489

 Score =  311 bits (796), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 174/444 (39%), Positives = 274/444 (61%), Gaps = 18/444 (4%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           ++GCQMN +DS  +  M    GYER   +  ADLI+ NTC +RE A  KVY  LG+++  
Sbjct: 54  TFGCQMNEHDSEELAYMLERMGYERTEKLYKADLIIYNTCAVRENAEMKVYGNLGQLKFT 113

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELL-ERARFGK 147
           K    ++  D+ + + GC+ Q     EEI +    VN++ G    YR PELL ++   GK
Sbjct: 114 K----RKNPDVKIALCGCMMQQPHVVEEIKKNHKHVNLMFGTHNLYRFPELLYKQMTTGK 169

Query: 148 RVVDTDYSVEDKFERLSIVDGGY-NRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
            +V+  + V+ +     +++G + NRK  + AF+ I  GC+ FCT+C+VPYTRG E SR 
Sbjct: 170 NIVEV-WDVDGE-----VIEGLHSNRKFELKAFVNIMYGCNNFCTYCIVPYTRGRERSRE 223

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
              ++DE ++L+ NG  E+TLLGQNVN++ GK L+    TF++LL  +++I+GL R+R+ 
Sbjct: 224 PQDILDEIKELVANGTKEVTLLGQNVNSY-GKTLEN-PMTFAELLREVNKIEGLERIRFM 281

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
           TSHP+D+SD +I A  D + +  +LHLPVQ GS  +LK MNR +T  +Y  I+ ++R   
Sbjct: 282 TSHPKDLSDEVIYAMRDCEKICEFLHLPVQCGSSALLKKMNRHYTKEDYLNIVRKVRKEI 341

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           PDIA S+D +VGFPGET +D + T+D++++  Y  AF+F YS R GTP + M +Q+ E+ 
Sbjct: 342 PDIAFSTDIMVGFPGETLEDVQDTIDVIEETKYDSAFTFIYSKREGTPAAKMEDQIPEDE 401

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSPWLQSVVLNSKNH 445
           K  R   + + +       N +   +++EVL+E +  K+K +  G++   ++V  +S   
Sbjct: 402 KHRRFDEVLEHVNRIVNDINYSYQDKVVEVLVEGRSAKDKNRYTGKTRQNKTVNFDSNED 461

Query: 446 N-IGDIIKVRITDVKISTLYGELV 468
           N IG ++ V+IT  +  +L GE+V
Sbjct: 462 NLIGKLVNVKITQPRSFSLNGEVV 485


>gi|325295239|ref|YP_004281753.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Desulfurobacterium thermolithotrophum DSM 11699]
 gi|325065687|gb|ADY73694.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Desulfurobacterium thermolithotrophum DSM 11699]
          Length = 437

 Score =  311 bits (796), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 170/444 (38%), Positives = 272/444 (61%), Gaps = 13/444 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++F++K++GCQMNV DS +M  +  S GYE+ +  ++ADLI++NTC +R K   K YSF+
Sbjct: 2   KKFYIKTFGCQMNVNDSEKMAGILRSLGYEKTDLPEEADLIIVNTCSVRAKPDNKAYSFI 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           G ++ +K    KE  + ++ V GCV Q E E ILR    V++V G   + ++ EL++RA+
Sbjct: 62  GNLKKIK----KEKPETIIAVGGCVPQKEKESILRFKH-VDLVFGTFNFMKIGELIKRAK 116

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
             +RVV+   S   + +++ ++D     +    A++T+Q GC++FC++C+VP+TRG E S
Sbjct: 117 -KERVVEILNSKIPEEDKVPLIDSYL--ENPYVAYVTVQRGCNRFCSYCIVPFTRGRERS 173

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
                V+ E ++L + GV E+ LLGQNV+ +  +G+D      +DLLY +SE++G+ R+R
Sbjct: 174 VKPELVLKEVKRLAERGVKEVHLLGQNVDFYNYEGID-----LADLLYMVSEVEGIERIR 228

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +TTSHP   +  +++A  +++ + PY+HLP QSGS +IL+ MNR +T  EY + +  ++ 
Sbjct: 229 FTTSHPCGFNRKIVEAMKNIEKVCPYVHLPPQSGSTKILERMNRGYTREEYTEKVMMLKE 288

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             P +A+S DFIVGFPGET  DF  T+ LV+   + Q F F+YSPR  T  SN  + V +
Sbjct: 289 EIPKVALSGDFIVGFPGETTKDFEETLSLVETCVFDQGFVFEYSPRPFTKASNFKDDVPK 348

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
             K  RL  LQ  LR Q    N   +G I EVL+E    +  +L GR+   + VV +   
Sbjct: 349 EEKNRRLQELQNLLRVQAEEKNKKRLGCIEEVLVEGKSPKGKELSGRTKDNKLVVFDGSE 408

Query: 445 HNIGDIIKVRITDVKISTLYGELV 468
             +G  +++ IT+     L G+L+
Sbjct: 409 ELVGKFVEIEITETSPFFLKGKLL 432


>gi|299144078|ref|ZP_07037158.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Peptoniphilus sp. oral
           taxon 386 str. F0131]
 gi|298518563|gb|EFI42302.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Peptoniphilus sp. oral
           taxon 386 str. F0131]
          Length = 480

 Score =  310 bits (795), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 179/449 (39%), Positives = 271/449 (60%), Gaps = 17/449 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +R  + ++GCQMN +DS ++E +    GYE +  + D+DL+VLNTC +R  A +KVY  L
Sbjct: 43  KRAKIITHGCQMNEHDSEKIEWILEKMGYEIIQDLADSDLVVLNTCSVRHSAEDKVYGQL 102

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEE--ILRRSPIVNVVVGPQTYYRLPELLER 142
           G    +     K+  +L V V GC+ Q +     ++ +   V+++ G    ++LPELL +
Sbjct: 103 G----VLKHLKKKKNNLKVAVCGCMMQRKESRNYVIDKFENVDIIFGTNNIWKLPELLLK 158

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDG--GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
                   +T+    D  E  S +D   G NR     +++ I  GC+ FCTFC+VPYTRG
Sbjct: 159 N------YETNKLSMDIEENFSGIDDTLGANRLYPYKSYVNIMYGCNNFCTFCIVPYTRG 212

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E SR    ++ E   L  NG  E+TLLGQNVN++ GK L  +  +F++LLY ++EI G+
Sbjct: 213 REQSRDPRDIIREIELLAKNGTKEVTLLGQNVNSY-GKNLQ-KPISFANLLYRINEIDGI 270

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+ TSHP+D+SD LI A+ DLD L  +LHLPVQSGS RILK MNR+++  +Y + ID
Sbjct: 271 DRIRFMTSHPKDISDELIYAYRDLDKLCNFLHLPVQSGSSRILKLMNRKYSKEDYLKKID 330

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           +I++V P+IA+ +D +VGFPGET++DF  T+DLV K+ Y  +F+F YS R GT  +   E
Sbjct: 331 KIKTVNPNIALCTDLMVGFPGETEEDFMETIDLVKKVQYDTSFTFIYSKREGTFAAKSNE 390

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GRSPWLQSVV 439
           Q+ + +K +R   L   L   Q   N   +G+ ++VL+E   K   + V GR+   + V 
Sbjct: 391 QIPDKIKHDRFQKLIDVLYPIQFEKNKKNIGRNVKVLVEDVSKNNSENVSGRTEEFKLVN 450

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
             +  + IG I+ V+ITD    +L GE++
Sbjct: 451 FRADKNKIGKIVNVKITDTNTFSLTGEII 479


>gi|311068224|ref|YP_003973147.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
           atrophaeus 1942]
 gi|310868741|gb|ADP32216.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
           atrophaeus 1942]
          Length = 509

 Score =  310 bits (795), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 176/450 (39%), Positives = 266/450 (59%), Gaps = 19/450 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++F++++YGCQMN +D+  M  +F + GYE  NS+DDA++I+LNTC IRE A  KV+  L
Sbjct: 66  RKFYIRTYGCQMNEHDTEVMAGIFMALGYEATNSVDDANVILLNTCAIRENAENKVFGEL 125

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G ++ LK    KE  DL++ V GC++Q E     IL++ P V+++ G    +RLPELL  
Sbjct: 126 GHLKTLK----KENPDLILGVCGCMSQEESVVNRILKKHPFVDMIFGTHNIHRLPELLSE 181

Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           A   K +V   +S E D  E L  V     R+  +  ++ I  GCDKFCT+C+VPYTRG 
Sbjct: 182 AYLSKEMVIEVWSKEGDVIENLPKV-----RRGKIKGWVNIMYGCDKFCTYCIVPYTRGK 236

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR   +++ E R+L   G  EITLLGQNVNA+ GK  D       DL+  L +I  + 
Sbjct: 237 ERSRRPEEIIQEVRRLASEGYKEITLLGQNVNAY-GKDFDDITYGLGDLMDELRKID-IP 294

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHPRD  D L++  G    L+ ++HLPVQSGS  +LK M R++    Y +++ +
Sbjct: 295 RIRFTTSHPRDFDDHLVEVLGKGGNLLDHIHLPVQSGSSEVLKLMARKYDRARYMELVGK 354

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I++  P+ ++++D IVGFP ETD+ F  T+ L  ++ +  A++F YSPR GTP + M + 
Sbjct: 355 IKAAMPNASLTTDIIVGFPNETDEQFEETLSLYREVEFDSAYTFIYSPREGTPAAKMKDN 414

Query: 382 VDENVKAERLLCLQ---KKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSV 438
           V   VK ERL  L    K++  +++   +  V +++     K+  E   L G +   + V
Sbjct: 415 VPMRVKKERLQRLNDLVKEISAKKMKEYEGEVVEVLVEGESKNNPE--ILAGYTRKSKLV 472

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468
                   IG ++ V+I   K  +L GE+V
Sbjct: 473 NFKGPKEAIGKLVHVKIHQAKTWSLDGEMV 502


>gi|52080307|ref|YP_079098.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
           licheniformis ATCC 14580]
 gi|52785683|ref|YP_091512.1| YmcB [Bacillus licheniformis ATCC 14580]
 gi|319645912|ref|ZP_08000142.1| hypothetical protein HMPREF1012_01176 [Bacillus sp. BT1B_CT2]
 gi|81385531|sp|Q65JE5|MIAB_BACLD RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|52003518|gb|AAU23460.1| conserved hypothetical protein [Bacillus licheniformis ATCC 14580]
 gi|52348185|gb|AAU40819.1| YmcB [Bacillus licheniformis ATCC 14580]
 gi|317391662|gb|EFV72459.1| hypothetical protein HMPREF1012_01176 [Bacillus sp. BT1B_CT2]
          Length = 509

 Score =  310 bits (795), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 174/448 (38%), Positives = 260/448 (58%), Gaps = 15/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++F++++YGCQMN +D+  M  +F + GYE  +S +DA++I+LNTC IRE A  KV+  +
Sbjct: 66  RKFYIRTYGCQMNEHDTEVMAGIFMALGYEPTDSTEDANVILLNTCAIRENAENKVFGEI 125

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G ++ LK    K+  DL++ V GC++Q E     IL++ P V+++ G    +RLPELL  
Sbjct: 126 GHLKALK----KDNPDLILGVCGCMSQEESVVNRILKKHPFVDLIFGTHNIHRLPELLSE 181

Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           A   K +V   +S E D  E L  V  G      +  ++ I  GCDKFCT+C+VPYTRG 
Sbjct: 182 AYLSKEMVIEVWSKEGDVIENLPKVRTG-----KIKGWVNIMYGCDKFCTYCIVPYTRGK 236

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR    ++ E R+L   G  EITLLGQNVNA+ GK  +  +     L+  L +I  + 
Sbjct: 237 ERSRRPEDIIQEVRRLAAEGYKEITLLGQNVNAY-GKDFEDMEYGLGHLMDELRKID-IP 294

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHPRD  D LI+       L+ ++HLPVQSGS  +LK M R++    Y +++ +
Sbjct: 295 RIRFTTSHPRDFDDHLIEVLAKGGNLLDHIHLPVQSGSSDVLKLMARKYDRERYLELVAK 354

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I+   P+ ++++D IVGFP ETD+ F  T+ L  ++ +  A++F YSPR GTP + M + 
Sbjct: 355 IKKAMPNASLTTDIIVGFPNETDEQFEETLSLYREVEFDSAYTFIYSPREGTPAAKMKDN 414

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440
           V   VK ERL  L + + E          GQ++EVL+E   K     L G +   + V  
Sbjct: 415 VPMRVKKERLQRLNEVVNEISAKKMKEYEGQVVEVLVEGESKNNPDILAGYTRKNKLVNF 474

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 IG ++ V+I   K  +L GE+V
Sbjct: 475 KGPKEAIGQLVNVKIHQAKTWSLDGEMV 502


>gi|326791331|ref|YP_004309152.1| RNA modification enzyme, MiaB family [Clostridium lentocellum DSM
           5427]
 gi|326542095|gb|ADZ83954.1| RNA modification enzyme, MiaB family [Clostridium lentocellum DSM
           5427]
          Length = 470

 Score =  310 bits (795), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 172/447 (38%), Positives = 264/447 (59%), Gaps = 15/447 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           ++ + ++GCQMN  DS ++E M    GY +  + ++AD I+ NTC +RE A  K+Y  LG
Sbjct: 34  QYCISTFGCQMNARDSEKIEGMLEQIGYTKTENEEEADFIIYNTCCVRENAELKIYGRLG 93

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAE--GEEILRRSPIVNVVVGPQTYYRLPELLE-R 142
            ++     R K+  + ++ + GC+ Q +   + + ++   ++++ G    Y+LPELL+ R
Sbjct: 94  ALK----GRRKKNPNFMIALCGCMMQQDIVLDTLKKKFNFIDIIFGTYNIYKLPELLQTR 149

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
               + V+D   S +D  E L       +RK    A + I  GC+ FCT+C+VPY RG E
Sbjct: 150 LETKQNVIDIWDSYQDIVEDLPD-----SRKYDFKACVNIMYGCNNFCTYCIVPYVRGRE 204

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR    +V E + L+  GV EI LLGQNVN++ GK LD E  +F++LL  ++ I+GL R
Sbjct: 205 RSRKPEDIVTEIKALVSEGVKEIMLLGQNVNSY-GKTLD-EPISFAELLKQINAIEGLKR 262

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+ TSHP+D+SD LI+     D + P +HLP QSGS ++LK MNR +T   Y +++ +I
Sbjct: 263 IRFMTSHPKDLSDELIEVMASCDKICPSVHLPFQSGSTKLLKKMNRHYTKESYLELVRKI 322

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           ++  P + +++D IVGFPGET++DF  TM++V+K+ YA AF+F YS R GTP + M +QV
Sbjct: 323 KAAIPRVELTTDIIVGFPGETEEDFLDTMEVVEKVHYASAFTFIYSKRTGTPAATMEDQV 382

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVLN 441
            E+V  ER   L   + +Q  +     VGQ +EVL E+  K+    L GR+     V   
Sbjct: 383 PEDVTKERFNRLLALVNKQSAATLHKYVGQTVEVLFEEVSKQDDNVLSGRTDTGLLVNTP 442

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
           +    +G  +KV I D K   L GEL 
Sbjct: 443 APKEYVGKFVKVHIVDNKTHYLIGELA 469


>gi|323703565|ref|ZP_08115210.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Desulfotomaculum
           nigrificans DSM 574]
 gi|323531468|gb|EGB21362.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Desulfotomaculum
           nigrificans DSM 574]
          Length = 459

 Score =  310 bits (794), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 179/448 (39%), Positives = 265/448 (59%), Gaps = 15/448 (3%)

Query: 25  QRFF-VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           Q+F+ V ++GCQMN  DS  +  M    GY    S ++AD+I+LNTC +RE A  KV+  
Sbjct: 17  QKFYHVITFGCQMNERDSESLAGMLEDMGYLPTESREEADIIILNTCCVRETAESKVFGL 76

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAE--GEEILRRSPIVNVVVGPQTYYRLPELLE 141
           LGR+R LK ++     DL++ VAGC++Q E   ++I    P V+++ G    + LP +++
Sbjct: 77  LGRLRQLKVAK----PDLIIGVAGCMSQQEEVAKKIRHSFPFVDIIFGTHNIHELPRMIQ 132

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           + R  +  V   ++ E        V     RK  + A++TI  GC+ FCT+C+VPY RG 
Sbjct: 133 QVRENQEAVLEVWATEKGIAENVPV----RRKDKLKAWVTIMYGCNNFCTYCIVPYVRGR 188

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR+   +++E + L+  G  E+TLLGQNVN++ GK L  +   F+DLL  L +I GL 
Sbjct: 189 ERSRNPENIIEEIKGLVAQGYKEVTLLGQNVNSY-GKDLQMD-YRFADLLLDLDKITGLK 246

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+ TSHPRD    LI      + +  + HLP Q+GS+RILK MNR +T   Y Q+ID 
Sbjct: 247 RIRFMTSHPRDFDQRLIDVIASTNKVCEHFHLPAQAGSNRILKLMNRGYTREHYLQLIDN 306

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           IR   P  +I+SD +VGFPGET++DF  T+DLV ++ Y  AF+F Y+ R GTP + M EQ
Sbjct: 307 IRKAIPGASITSDIMVGFPGETEEDFADTLDLVRRVRYDSAFTFVYNIRSGTPAAKM-EQ 365

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVL 440
           V E VK+ R+  L     +  +  N    G+++EVL+E   K    KL GRS   + VV 
Sbjct: 366 VPEEVKSARIQKLIDLQNQISLENNRQEEGKVLEVLVEGETKTNPDKLAGRSRTNKLVVF 425

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
           +      G ++ ++IT  +++ L GELV
Sbjct: 426 DGSPDLTGQLVPIKITKGRLNLLEGELV 453


>gi|87310113|ref|ZP_01092245.1| probable MiaB protein-putative tRNA-thiotransferase
           [Blastopirellula marina DSM 3645]
 gi|87287103|gb|EAQ79005.1| probable MiaB protein-putative tRNA-thiotransferase
           [Blastopirellula marina DSM 3645]
          Length = 475

 Score =  310 bits (794), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 176/471 (37%), Positives = 270/471 (57%), Gaps = 31/471 (6%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           +P+R ++ + GCQMN+ DS  +      QGYE     ++AD ++ NTC +RE+A  K YS
Sbjct: 1   MPKRLYIDTVGCQMNMLDSELVVASLRQQGYELTTKPEEADTLLFNTCSVREQAENKTYS 60

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            LG +R+LK S  ++    ++ V GC+AQ   ++I +R+P V++VVGP   +++P L+++
Sbjct: 61  HLGVLRDLKASHPEK----IIGVMGCMAQNHQKKIFQRAPYVDLVVGPGQLHQIPSLIDK 116

Query: 143 ARFGK-RVVDTDYSVED--------KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC 193
              G+ R ++      D          E    +     R     A++ IQ GCDKFCT+C
Sbjct: 117 VAAGEGRQIEVSLGRRDGSRVEIARSHESFDPLRDPEMRPTPFQAYVRIQIGCDKFCTYC 176

Query: 194 VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS 253
           +VP  RG E  R    ++ E R L D G  EITL+GQ VN++RG+   G+    +DLL +
Sbjct: 177 IVPSVRGPEQGRRPEDILAETRHLADQGTVEITLVGQTVNSYRGQDAAGKSWNLADLLAA 236

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
           + EI G+ R+++ T++P+DM+D L+ A  +LD + PYLH+P QSGS+ +LK M R +T  
Sbjct: 237 IHEIDGIRRIKFVTNYPKDMTDELLTAVRELDKVSPYLHVPAQSGSNDMLKRMKRGYTVE 296

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
           +YR ++ RIR   P  A+SSDFIVGF GET+ +F+ T+DLV++  +  +F FKYS R GT
Sbjct: 297 QYRDMMRRIREGVPGAAVSSDFIVGFCGETEAEFQMTVDLVEECRFKNSFIFKYSEREGT 356

Query: 374 PGSNM-LEQVDENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-- 427
            G+ + L+ V   VK ER   LL +Q ++    +  N   +G  + VL+E   K   K  
Sbjct: 357 RGAELFLDDVPFTVKQERNNTLLEIQNRI---SLEDNQKQIGNTLNVLVEGISKAAAKKE 413

Query: 428 ---------LVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
                    L GR+   + VV +     IG I+ V I D    TL+GE++ 
Sbjct: 414 DADDSPVVQLTGRTHCDRIVVFDGNRRQIGQILPVAIYDSASHTLFGEVIT 464


>gi|182435525|ref|YP_001823244.1| hypothetical protein SGR_1732 [Streptomyces griseus subsp. griseus
           NBRC 13350]
 gi|229891007|sp|B1VXU5|MIAB_STRGG RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|178464041|dbj|BAG18561.1| conserved hypothetical protein [Streptomyces griseus subsp. griseus
           NBRC 13350]
          Length = 506

 Score =  310 bits (794), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 182/464 (39%), Positives = 271/464 (58%), Gaps = 29/464 (6%)

Query: 15  SQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERV--NSMDDADLIVLNTCHI 72
           S+ VD   V + + V++YGCQMNV+DS R+  +    GY R    S  DAD++V NTC +
Sbjct: 7   SEAVD---VQKSYEVRTYGCQMNVHDSERLSGLLEGAGYVRAPEGSDGDADVVVFNTCAV 63

Query: 73  REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT 132
           RE A  K+Y  LGR+  +K  R      + + V GC+AQ + + I++R+P V+VV G   
Sbjct: 64  RENADNKLYGNLGRLAPMKTKRP----GMQIAVGGCLAQKDRDTIVKRAPWVDVVFGTHN 119

Query: 133 YYRLPELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCT 191
             +LP LLERAR  +   ++   S+E     L        R+    A+++I  GC+  CT
Sbjct: 120 IGKLPVLLERARVQEEAQIEIAESLEAFPSTLPT-----RRESAYAAWVSISVGCNNTCT 174

Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDL 250
           FC+VP  RG E  R    ++ E   L+  GVCEITLLGQNVNA+   G D G++  FS L
Sbjct: 175 FCIVPALRGKEKDRRTGDILAEIEALVAEGVCEITLLGQNVNAY---GSDIGDREAFSKL 231

Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
           L +   I+GL R+R+T+ HPRD +D +I A  +   +MP LH+P+QSGSD +LK+M R +
Sbjct: 232 LRACGRIEGLERVRFTSPHPRDFTDDVIAAMAETPNVMPQLHMPMQSGSDTVLKAMRRSY 291

Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370
               +  II+++R+  P+ AIS+D IVGFPGET++DF  TM  V +  +A AF+F+YS R
Sbjct: 292 RQERFLGIIEKVRAAMPEAAISTDIIVGFPGETEEDFEQTMHAVREARFANAFTFQYSKR 351

Query: 371 LGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSF--NDACVGQIIEVLI-EKHGKEKG- 426
            GTP ++M  Q+ + V  ER + L     ++Q+S+  N   VG+ ++V++ E  G++ G 
Sbjct: 352 PGTPAADMDGQIPKEVVQERYMRLSAL--QEQISWDENKKQVGRTLDVMVAEGEGRKDGA 409

Query: 427 --KLVGRSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGE 466
             +L GR+P  + V        +  GD++ V IT      L  E
Sbjct: 410 TQRLSGRAPDNRLVHFTQPEKAVRPGDVVTVEITYAAPHHLLAE 453


>gi|291448226|ref|ZP_06587616.1| RNA modification enzyme [Streptomyces roseosporus NRRL 15998]
 gi|291351173|gb|EFE78077.1| RNA modification enzyme [Streptomyces roseosporus NRRL 15998]
          Length = 506

 Score =  310 bits (794), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 183/464 (39%), Positives = 271/464 (58%), Gaps = 29/464 (6%)

Query: 15  SQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERV--NSMDDADLIVLNTCHI 72
           S+ VD   V + + V++YGCQMNV+DS R+  +    GY R    S  DAD++V NTC +
Sbjct: 7   SEAVD---VQKSYEVRTYGCQMNVHDSERLSGLLEGAGYVRAPEGSDGDADVVVFNTCAV 63

Query: 73  REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT 132
           RE A  K+Y  LGR+  +K  R      + + V GC+AQ + + I++R+P V+VV G   
Sbjct: 64  RENADNKLYGNLGRLAPMKTKRP----GMQIAVGGCLAQKDRDTIVKRAPWVDVVFGTHN 119

Query: 133 YYRLPELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCT 191
             +LP LLERAR  +   ++   S+E     L        R+    A+++I  GC+  CT
Sbjct: 120 IGKLPVLLERARIQEEAQIEIAESLEAFPSTLPT-----RRESAYAAWVSISVGCNNTCT 174

Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDL 250
           FC+VP  RG E  R    ++ E   L+  GV EITLLGQNVNA+   G D G++  FS L
Sbjct: 175 FCIVPALRGKEKDRRTGDILAEIEALVAEGVSEITLLGQNVNAY---GSDIGDREAFSKL 231

Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
           L +  +I+GL R+R+T+ HPRD +D +I A  +   +MP LH+P+QSGSD ILK+M R +
Sbjct: 232 LRACGKIEGLERVRFTSPHPRDFTDDVIAAMAETPNVMPQLHMPMQSGSDSILKAMRRSY 291

Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370
               +  II+++R+  PD AIS+D IVGFPGET++DF  TM  V +  +A AF+F+YS R
Sbjct: 292 RQERFLGIIEKVRAAMPDAAISTDIIVGFPGETEEDFEQTMHAVREARFANAFTFQYSKR 351

Query: 371 LGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSF--NDACVGQIIEVLI-EKHGKEKG- 426
            GTP ++M  Q+ + V  ER + L     ++Q+S+  N   VG+ ++V++ E  G++ G 
Sbjct: 352 PGTPAADMDGQIPKEVVQERYMRLSA--LQEQISWDENKKQVGRTLDVMVAEGEGRKDGA 409

Query: 427 --KLVGRSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGE 466
             +L GR+P  + V        +  GD++ V IT      L  E
Sbjct: 410 TQRLSGRAPDNRLVHFTQPEQAVRPGDVVTVEITYAAPHHLLAE 453


>gi|284929598|ref|YP_003422120.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [cyanobacterium UCYN-A]
 gi|284810042|gb|ADB95739.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [cyanobacterium UCYN-A]
          Length = 448

 Score =  310 bits (793), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 170/452 (37%), Positives = 277/452 (61%), Gaps = 23/452 (5%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           + + ++GCQMN  DS RM  +    G++  + +D A+LI+ NTC IR+ A +KVYS+LG+
Sbjct: 9   YHIVTFGCQMNKADSERMAGILEDMGFQWTDVLDQANLILYNTCTIRDSAEQKVYSYLGK 68

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
               +  R  +   L++ VAGCVAQ EGE+ILRR P +++V+GPQ    L +LLE+   G
Sbjct: 69  ----QAKRKHKDPSLILAVAGCVAQQEGEKILRRIPELDLVMGPQHVNYLGDLLEQVLKG 124

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRG--VTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            ++V T        E + I++     +R   +TA++ I  GC++ C++CVVP  RG+E S
Sbjct: 125 NQIVAT--------EPIHIIEDITKPRRASKITAWVNIIYGCNERCSYCVVPSVRGLEQS 176

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG------EKCTFSDLLYSLSEIK 258
           R+   +  E + L   G  E+TLLGQN++A+ G+ L G       + TF+DLLY + E+ 
Sbjct: 177 RTPEDICSEIKLLEQQGYKEVTLLGQNIDAY-GRDLPGTTETGRNQYTFTDLLYRIHEVS 235

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
            + R+R+ TSHPR  ++ LI A  +L  +  + H+P QSG + ILK M R +T   YRQ+
Sbjct: 236 NIKRIRFATSHPRYFTERLISACHELPNICEHFHIPFQSGDNDILKKMKRGYTHQRYRQL 295

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           ID++R   P+ +I++D IVGFPGET+  F  T+ LV+ IG+ Q  +  YSPR GTP +  
Sbjct: 296 IDKVRYYMPNASITADAIVGFPGETEQQFENTLKLVEDIGFDQLNTAAYSPRPGTPAATW 355

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQS 437
            EQVD+++K++RL  L   + ++    +   +G+I E+L+E+   KE  +++GR+   + 
Sbjct: 356 SEQVDDDIKSDRLQRLNHLVGQKAAENSRKYLGEIEEILVEQENPKENNQVMGRTRKNRL 415

Query: 438 VVLNSKNHNI-GDIIKVRITDVKISTLYGELV 468
                   ++ G+++KV+IT+ +  +L G+++
Sbjct: 416 TFFQGNIDDLRGELVKVKITEARPFSLTGKIL 447


>gi|296269109|ref|YP_003651741.1| RNA modification enzyme, MiaB family [Thermobispora bispora DSM
           43833]
 gi|296091896|gb|ADG87848.1| RNA modification enzyme, MiaB family [Thermobispora bispora DSM
           43833]
          Length = 498

 Score =  310 bits (793), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 179/443 (40%), Positives = 267/443 (60%), Gaps = 26/443 (5%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+ + V++YGCQMNV+DS R+  +  S GY R    + AD+IV NTC +RE A  ++Y  
Sbjct: 12  PRTYEVRTYGCQMNVHDSERIAGLLESAGYVRAPEGEIADVIVFNTCAVRENADNRLYGN 71

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LG +R +K +R      + + V GC+AQ +  EI+RR+P V+VV G      LP LLERA
Sbjct: 72  LGHLRPIKMAR----KGMQIAVGGCLAQKDRSEIIRRAPWVDVVFGTHNIGSLPALLERA 127

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRG--VTAFLTIQEGCDKFCTFCVVPYTRGI 201
           R     V  +  VE K E L         KR     A++ I  GC+  CTFC+VP  RG 
Sbjct: 128 R-----VAQEAQVEIK-EALETFPSTLPTKRESVYAAWVAISVGCNNTCTFCIVPSLRGK 181

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGL 260
           E  R    ++ E R L+  GV E+TLLGQNVN +   G++ G++  FS LL +  EI+GL
Sbjct: 182 ERDRRPGDILSEIRALVAEGVIEVTLLGQNVNTY---GVEFGDRQAFSKLLRACGEIEGL 238

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+T+ HP   +D +I A  +   +MP LH+P+QSGSDRIL++M R + A  +  I++
Sbjct: 239 ERVRFTSPHPAAFTDDVIAAMAETPNVMPSLHMPLQSGSDRILRAMRRSYRAERFLGILE 298

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           R+R+  PD AIS+D IVGFPGET++DF+ T ++V +  +A AF+F+YS R GTP + M  
Sbjct: 299 RVRAAIPDAAISTDIIVGFPGETEEDFQRTCEVVREARFAHAFTFQYSIRPGTPAAAMEN 358

Query: 381 QVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKE---KGKLVGRSP 433
           QV + V   + +RL+ LQ+++  ++   N A VG+ +EVLI E  G++     ++ GR+ 
Sbjct: 359 QVPKEVVQDRYDRLIALQEQISWEE---NKAQVGRTVEVLIAEGEGRKDDRTQRISGRAA 415

Query: 434 WLQSVVLNSKNHNIGDIIKVRIT 456
             + V +   +   GD++   +T
Sbjct: 416 DYRLVHVAPVDARPGDMVTAEVT 438


>gi|187779606|ref|ZP_02996079.1| hypothetical protein CLOSPO_03202 [Clostridium sporogenes ATCC
           15579]
 gi|187773231|gb|EDU37033.1| hypothetical protein CLOSPO_03202 [Clostridium sporogenes ATCC
           15579]
          Length = 450

 Score =  310 bits (793), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 173/445 (38%), Positives = 263/445 (59%), Gaps = 15/445 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +FF++++GCQMN  DS ++  M   + Y R    ++AD+I+ NTC +RE A  KVY  LG
Sbjct: 15  KFFIETWGCQMNEEDSEKLSGMLKRESYIRTEEREEADVIIFNTCCVRENAELKVYGNLG 74

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERA 143
            ++ LK     +  +L++ V GC+ Q  G  E I ++ P V++++G    +     L   
Sbjct: 75  ILKGLK----AKNPNLIIAVTGCMMQQAGMAETIKKKFPFVDIIIGTHNLHNFSNYLNEV 130

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           +     V      ED     SI++    +RK  + AF+TI  GC+ FCT+C+VPY RG E
Sbjct: 131 KKKHTSVLKIQEKED-----SIIENMPIDRKNSMKAFVTIMYGCNNFCTYCIVPYVRGRE 185

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR+   + DE + L+  G  EITLLGQNVN++ GK L+    TF++LL  ++ I+GL R
Sbjct: 186 RSRTPENIEDEIKNLVSKGYKEITLLGQNVNSY-GKDLE-PNVTFAELLKRVNTIEGLER 243

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+ TSHP+D++D +I+A    D L   +HLPVQSGS  +LK MNR +   +Y  ++ +I
Sbjct: 244 VRFMTSHPKDLTDDVIEAIAKCDKLCEQIHLPVQSGSSDMLKKMNRHYDREKYLDVVSKI 303

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           + + P++A+S+D IVGFPGET+ DF  T+ LV  + Y  AF+F YS R GTP +   +QV
Sbjct: 304 KKLIPNVALSTDIIVGFPGETEKDFEETLSLVKTVEYDSAFTFLYSIRKGTPAAKFDDQV 363

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVLN 441
            E+VK +R   L + + E     N A  G+I EVL+E   K ++ KL+GR+   + V   
Sbjct: 364 PEDVKHKRFNRLVEVVNEISAKKNKAYEGKIEEVLVEGTSKNDENKLMGRTRAGKLVNFI 423

Query: 442 SKNHNIGDIIKVRITDVKISTLYGE 466
               +IG ++ V+IT     +L GE
Sbjct: 424 GNKESIGKLVNVKITKANSFSLTGE 448


>gi|320008158|gb|ADW03008.1| RNA modification enzyme, MiaB family [Streptomyces flavogriseus
           ATCC 33331]
          Length = 506

 Score =  310 bits (793), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 184/464 (39%), Positives = 271/464 (58%), Gaps = 29/464 (6%)

Query: 15  SQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERV--NSMDDADLIVLNTCHI 72
           S+ VD   V + + V++YGCQMNV+DS R+  +    GY R    S  DAD++V NTC +
Sbjct: 7   SEAVD---VQKSYEVRTYGCQMNVHDSERLSGLLEGAGYVRAPEGSDGDADVVVFNTCAV 63

Query: 73  REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT 132
           RE A  K+Y  LGR+  +K  R      + + V GC+AQ + + I+RR+P V+VV G   
Sbjct: 64  RENADNKLYGNLGRLAPMKTKRP----GMQIAVGGCLAQKDRDTIVRRAPWVDVVFGTHN 119

Query: 133 YYRLPELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCT 191
             +LP LLERAR  +   V+   S+E     L        R+    A+++I  GC+  CT
Sbjct: 120 IGKLPVLLERARVQEEAQVEIAESLEAFPSTLPT-----RRESAYAAWVSISVGCNNTCT 174

Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDL 250
           FC+VP  RG E  R    ++ E   L+  GV EITLLGQNVNA+   G D G++  FS L
Sbjct: 175 FCIVPALRGKEKDRRTGDILAEIEALVAEGVSEITLLGQNVNAY---GSDIGDREAFSKL 231

Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
           L +   I+GL R+R+T+ HPRD +D +I A  +   +MP LH+P+QSGSD ILK+M R +
Sbjct: 232 LRACGTIEGLERVRFTSPHPRDFTDDVIAAMAETPNVMPQLHMPMQSGSDTILKAMRRSY 291

Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370
               +  II+++R+  PD AIS+D IVGFPGET++DF  TM  V +  +A AF+F+YS R
Sbjct: 292 RQERFLGIIEKVRAAMPDAAISTDIIVGFPGETEEDFEQTMHAVREARFANAFTFQYSKR 351

Query: 371 LGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSF--NDACVGQIIEVLI-EKHGKEKG- 426
            GTP + M  Q+ + V  ER + L     ++Q+S+  N   VG+ ++V++ E  G++ G 
Sbjct: 352 PGTPAAEMEGQIPKEVVQERYMRLSAL--QEQISWDENKKQVGRTLDVMVAEGEGRKDGA 409

Query: 427 --KLVGRSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGE 466
             +L GR+P  + V     + ++  GD++ V I+      L  E
Sbjct: 410 THRLSGRAPDNRLVHFTKPSEDVRPGDVVTVEISYAAPHHLLAE 453


>gi|56751740|ref|YP_172441.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Synechococcus
           elongatus PCC 6301]
 gi|81301183|ref|YP_401391.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Synechococcus
           elongatus PCC 7942]
 gi|81561774|sp|Q5N199|MIAB_SYNP6 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|123755327|sp|Q31KL5|MIAB_SYNE7 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|56686699|dbj|BAD79921.1| hypothetical protein [Synechococcus elongatus PCC 6301]
 gi|81170064|gb|ABB58404.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Synechococcus elongatus
           PCC 7942]
          Length = 452

 Score =  309 bits (792), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 173/456 (37%), Positives = 272/456 (59%), Gaps = 23/456 (5%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
            P+R+ + ++GCQMN  DS RM  +    GY      +DADL++ NTC IR+ A +KVYS
Sbjct: 3   TPRRYHITTFGCQMNKADSERMAGILEDLGYIWSEEANDADLVLYNTCTIRDNAEQKVYS 62

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
           +LGR    +  R ++  DL ++VAGCVAQ EGE +LRR P +++V+GPQ   RL +LL +
Sbjct: 63  YLGR----QAERKRQQPDLTLIVAGCVAQQEGESLLRRVPELDLVMGPQHANRLADLLAQ 118

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKR--GVTAFLTIQEGCDKFCTFCVVPYTRG 200
              G +VV T        E + I +     +R   +TA++ +  GC++ CT+CVVP  RG
Sbjct: 119 VEAGSQVVAT--------EEVEIAEDITQPRRDSTITAWVNVIYGCNERCTYCVVPNVRG 170

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC------TFSDLLYSL 254
            E SR  + +  E  +L   G  EITLLGQN++A+ G+ L G         T +DLLY++
Sbjct: 171 REQSREPAAIRAEIEQLAAQGYREITLLGQNIDAY-GRDLPGSTPEGRHLHTLTDLLYTI 229

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
            ++ G+ R+R+ TSHPR  ++ LI+A  +L  +  Y H+P QSG + +LK+M R +T   
Sbjct: 230 HDVPGIERIRFATSHPRYFTERLIRACAELPKVCEYFHIPFQSGDNDVLKAMARGYTVER 289

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
           Y +I+++IR + PD AIS+D IV FPGET++ F  T+ LV+++G+    +  YSPR GTP
Sbjct: 290 YLRIVEQIRDIIPDAAISADAIVAFPGETEEQFENTLKLVEQVGFDLVNTAAYSPRPGTP 349

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSP 433
            +N   Q+ E VK +RL  L   + +     +   +G+  EVLIE  + +   +++GR+ 
Sbjct: 350 AANAPNQLSEEVKQDRLQRLNHLVAQMAADRSQRYLGRTEEVLIEATNPRNPQQVMGRTR 409

Query: 434 WLQSVVLNSKNHNI-GDIIKVRITDVKISTLYGELV 468
             + V  +     + G ++ VRIT+ +  +L G+++
Sbjct: 410 TNRLVFCDGTIAQLEGQLVPVRITETRAFSLTGQIL 445


>gi|15614935|ref|NP_243238.1| hypothetical protein BH2372 [Bacillus halodurans C-125]
 gi|81786524|sp|Q9KAB7|MIAB_BACHD RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|10174992|dbj|BAB06091.1| BH2372 [Bacillus halodurans C-125]
          Length = 538

 Score =  309 bits (792), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 175/448 (39%), Positives = 261/448 (58%), Gaps = 15/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++F V++YGCQMN++DS  M  M    G+E  +   DAD+I++NTC IRE A  KV+  +
Sbjct: 95  KKFLVRTYGCQMNIHDSENMAGMLKEMGFEATDETTDADVILINTCAIRENAENKVFGEI 154

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G ++ LK    +E  +L++ V GC++Q EG    I+++   ++++ G    +RLP LL  
Sbjct: 155 GNLKQLK----REKPELVIGVCGCMSQEEGVVNRIMQKHQHIDMIFGTHNIHRLPHLLRN 210

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT-AFLTIQEGCDKFCTFCVVPYTRGI 201
           A FGK ++   +S E       IV+     + G T A++ I  GCDKFCT+C+VPYTRG 
Sbjct: 211 ALFGKEMIIEVWSKEG-----DIVENMPRAREGKTQAWVNIMYGCDKFCTYCIVPYTRGK 265

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR    ++ E R L   G  EITLLGQNVNA+ GK L        DL+  + +I  + 
Sbjct: 266 ERSRRPEDIIQEVRDLARQGYKEITLLGQNVNAY-GKDLADLDYGLGDLMDEIRKID-IP 323

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHPRD  D LI+       L+ ++HLPVQ G+  ILK M R++T  +Y ++  +
Sbjct: 324 RVRFTTSHPRDFDDHLIEVLAKGGNLVEHIHLPVQHGNSEILKLMARKYTREQYVELAQK 383

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I+   P+ + ++D IVGFP ETD+ F  T+ LV +I +  AF++ YSPR GTP + M + 
Sbjct: 384 IKRAIPNASFTTDLIVGFPNETDEQFEDTLSLVREIEFDSAFTYIYSPREGTPAAKMKDN 443

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440
           V   VK ERL  L   + +     N     +++EVL+E   K+    L GR+   + V  
Sbjct: 444 VPMEVKRERLARLNALVNDISAQKNLEYQDKVVEVLVEGESKKDPNILAGRTRTNRLVNF 503

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 IGDI+ V++T+ K  +L GE+V
Sbjct: 504 KGPKSVIGDIVYVKVTEAKTWSLNGEMV 531


>gi|148265155|ref|YP_001231861.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Geobacter
           uraniireducens Rf4]
 gi|229890547|sp|A5G670|MIAB_GEOUR RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|146398655|gb|ABQ27288.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Geobacter uraniireducens
           Rf4]
          Length = 440

 Score =  309 bits (792), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 175/441 (39%), Positives = 262/441 (59%), Gaps = 9/441 (2%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
            +++++GCQMNV DS ++  +    GY        ADL++LNTC +R KA EKVY+ L +
Sbjct: 7   LYLETFGCQMNVSDSEKIAALLKGIGYFPTQDSSQADLVILNTCSVRAKAEEKVYNHLVQ 66

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
            + LK  R K G  +++ V GCVAQ EGE +L   P +++V G    + LPEL+  A  G
Sbjct: 67  YKGLK--RKKPG--IILGVGGCVAQQEGERLLANVPHLDIVFGTHNLHLLPELVRAAEKG 122

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           +R+ +  +   +    L  VD    R  GV+ F+T+ +GC+ FC++C+VPY RG EISR 
Sbjct: 123 ERLAEVGFIDNETRLDLFPVD---ERTDGVSRFVTVMQGCENFCSYCIVPYVRGREISRR 179

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
            + ++ E R +  NGV E+TLLGQNVN++ G    GE  +F  LL  +S I G+ R+R+T
Sbjct: 180 SADILGEVRGMAGNGVKEVTLLGQNVNSY-GLKSSGE-MSFIALLREVSLIPGIERIRFT 237

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
           TSHP+D S  LI    ++  L  ++HLP QSGS+ +L +MNR +T  EY   I R+++  
Sbjct: 238 TSHPKDFSQPLIDCFAEIPKLCRHIHLPAQSGSNAVLAAMNRGYTREEYLGSIARLKAAC 297

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           P I I+ D IVGFPGET++DF+AT+ L++++ Y   FSF YS R  T  +   ++V ++ 
Sbjct: 298 PSIQITGDIIVGFPGETEEDFQATLSLMEEVRYTDVFSFIYSKRPETKAAGYADEVGQDE 357

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHN 446
           K  RL  L    R   +  N + VG + +VLIE   +  G+  GR+   + V L +    
Sbjct: 358 KQGRLSRLLDLQRRITLETNKSFVGTVQQVLIEGESRRGGQFYGRTSGNRVVNLAADVSL 417

Query: 447 IGDIIKVRITDVKISTLYGEL 467
           +G I+ V IT    ++L GEL
Sbjct: 418 VGSIVNVMITRGDQNSLQGEL 438


>gi|332710909|ref|ZP_08430845.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Lyngbya majuscula 3L]
 gi|332350223|gb|EGJ29827.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Lyngbya majuscula 3L]
          Length = 448

 Score =  309 bits (792), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 182/455 (40%), Positives = 277/455 (60%), Gaps = 23/455 (5%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+R+ + ++GCQMN  DS RM  +    G++   + ++ADLIV NTC IR+ A +KVYS+
Sbjct: 5   PRRYHITTFGCQMNKADSERMAGILEDIGFQWSENPNEADLIVYNTCTIRDNAEQKVYSY 64

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR    +  R  +  DL +VVAGCVAQ EGE +LRR P V++V+GPQ   RL +LL++ 
Sbjct: 65  LGR----QAKRKHQQPDLTLVVAGCVAQQEGEALLRRVPEVDLVMGPQHANRLGDLLDQV 120

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKR--GVTAFLTIQEGCDKFCTFCVVPYTRGI 201
             G ++V T        E + IV+     +R   ++A++ I  GC++ C++CVVP  RG+
Sbjct: 121 FDGNQLVAT--------EPIHIVEDITKPRRDSSISAWVNIIYGCNERCSYCVVPNVRGL 172

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG------EKCTFSDLLYSLS 255
           E SR+   +  E  +L   G  EITLLGQN++A+ G+ L G       + T +DLLY +S
Sbjct: 173 EQSRTPEAIRAEMEELGRLGYKEITLLGQNIDAY-GRDLPGVTESGRHQHTLTDLLYYVS 231

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
            + G+ RLR+ TSHPR   + LI+A  +L  +  + H+P QSG + ILK+M R +T  +Y
Sbjct: 232 NVPGIERLRFATSHPRYFVERLIRACHELPEVCEHFHIPFQSGDNDILKAMARGYTHQKY 291

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
           R+II+ IR   PD +IS+D IVGFPGET+  F  T+ LV+ IG+ Q  +  YSPR GTP 
Sbjct: 292 RRIINTIRDYMPDASISADAIVGFPGETEAQFENTLKLVEDIGFDQLNTAAYSPRPGTPA 351

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSPW 434
           +    Q+ E VK +RL  L   +  +    +   +G+I EVL+E ++ K+  +++GR+  
Sbjct: 352 ALWENQLSEEVKCDRLQRLNHLVAVKAAERSQRYLGRIEEVLVEDQNPKDNTQVMGRTKG 411

Query: 435 LQSVVLNSK-NHNIGDIIKVRITDVKISTLYGELV 468
            +    +   NH  G+++ V+IT+ +  +L GE V
Sbjct: 412 NRLTFFSGDINHLKGELVLVKITEARAFSLTGERV 446


>gi|239944763|ref|ZP_04696700.1| hypothetical protein SrosN15_27475 [Streptomyces roseosporus NRRL
           15998]
 gi|239991228|ref|ZP_04711892.1| hypothetical protein SrosN1_28246 [Streptomyces roseosporus NRRL
           11379]
          Length = 497

 Score =  309 bits (791), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 180/456 (39%), Positives = 267/456 (58%), Gaps = 26/456 (5%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERV--NSMDDADLIVLNTCHIREKAAEKV 80
           V + + V++YGCQMNV+DS R+  +    GY R    S  DAD++V NTC +RE A  K+
Sbjct: 3   VQKSYEVRTYGCQMNVHDSERLSGLLEGAGYVRAPEGSDGDADVVVFNTCAVRENADNKL 62

Query: 81  YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140
           Y  LGR+  +K  R      + + V GC+AQ + + I++R+P V+VV G     +LP LL
Sbjct: 63  YGNLGRLAPMKTKRP----GMQIAVGGCLAQKDRDTIVKRAPWVDVVFGTHNIGKLPVLL 118

Query: 141 ERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           ERAR  +   ++   S+E     L        R+    A+++I  GC+  CTFC+VP  R
Sbjct: 119 ERARIQEEAQIEIAESLEAFPSTLPT-----RRESAYAAWVSISVGCNNTCTFCIVPALR 173

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIK 258
           G E  R    ++ E   L+  GV EITLLGQNVNA+   G D G++  FS LL +  +I+
Sbjct: 174 GKEKDRRTGDILAEIEALVAEGVSEITLLGQNVNAY---GSDIGDREAFSKLLRACGKIE 230

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           GL R+R+T+ HPRD +D +I A  +   +MP LH+P+QSGSD ILK+M R +    +  I
Sbjct: 231 GLERVRFTSPHPRDFTDDVIAAMAETPNVMPQLHMPMQSGSDSILKAMRRSYRQERFLGI 290

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           I+++R+  PD AIS+D IVGFPGET++DF  TM  V +  +A AF+F+YS R GTP ++M
Sbjct: 291 IEKVRAAMPDAAISTDIIVGFPGETEEDFEQTMHAVREARFANAFTFQYSKRPGTPAADM 350

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSF--NDACVGQIIEVLI-EKHGKEKG---KLVGRS 432
             Q+ + V  ER + L     ++Q+S+  N   VG+ ++V++ E  G++ G   +L GR+
Sbjct: 351 DGQIPKEVVQERYMRLSA--LQEQISWDENKKQVGRTLDVMVAEGEGRKDGATQRLSGRA 408

Query: 433 PWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGE 466
           P  + V        +  GD++ V IT      L  E
Sbjct: 409 PDNRLVHFTQPEQAVRPGDVVTVEITYAAPHHLLAE 444


>gi|229092810|ref|ZP_04223948.1| hypothetical protein bcere0021_35610 [Bacillus cereus Rock3-42]
 gi|228690608|gb|EEL44389.1| hypothetical protein bcere0021_35610 [Bacillus cereus Rock3-42]
          Length = 457

 Score =  309 bits (791), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 168/403 (41%), Positives = 248/403 (61%), Gaps = 14/403 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++F++++YGCQMN +D+  M  +F + GYE   S +DAD+++LNTC IRE A  KV+  L
Sbjct: 66  RKFYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGEL 125

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G ++ LK    +   DLL+ V GC++Q E    +I++++  V++V G    +RLP +L+ 
Sbjct: 126 GHLKALK----RRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKD 181

Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           A F K  V   +S E D  E L  V     R+  + A++ I  GCDKFCT+C+VPYTRG 
Sbjct: 182 AMFSKETVVEVWSKEGDVIENLPKV-----RRGDIKAWVNIMYGCDKFCTYCIVPYTRGK 236

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR    ++ E R L  NG  EITLLGQNVNA+ GK  +  +    DL+  L ++  + 
Sbjct: 237 ERSRRPEDIIQEIRHLAANGYKEITLLGQNVNAY-GKDFEDIEYGLGDLMDELRKV-DIA 294

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHPRD  D LI+  G    L+ ++HLPVQSGS  +LK M R+++   Y +++ +
Sbjct: 295 RIRFTTSHPRDFDDHLIEVLGKGGNLVEHIHLPVQSGSTEMLKIMARKYSREHYLELVRK 354

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I+   P+  +++D IVGFP ETD+ F  TM L  ++G+  AF+F YSPR GTP + M + 
Sbjct: 355 IKEAIPNAVLTTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDN 414

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE 424
           V   VK ERL  L   + +  +  ND   GQI+EVL++   K+
Sbjct: 415 VPMEVKKERLQRLNALVNKLAIEKNDRYKGQIVEVLVDGESKK 457


>gi|320103836|ref|YP_004179427.1| MiaB family RNA modification protein [Isosphaera pallida ATCC
           43644]
 gi|319751118|gb|ADV62878.1| RNA modification enzyme, MiaB family [Isosphaera pallida ATCC
           43644]
          Length = 633

 Score =  309 bits (791), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 177/423 (41%), Positives = 252/423 (59%), Gaps = 26/423 (6%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+R F+++ GCQMNV DS  + +     GYE  +    AD I+ NTC +R+ A +KVYS 
Sbjct: 44  PRRLFIETVGCQMNVLDSELVVERLRRDGYELTSDPQQADTILFNTCSVRQHAEDKVYSA 103

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR+R LK     E  ++ + V GC+AQ + + IL+R+P V+++VGP     +PEL+ RA
Sbjct: 104 LGRLRGLK----AEHPEVTIGVLGCMAQKDQKRILQRAPHVDLMVGPGQLEVVPELIARA 159

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYN----------RKRGVTAFLTIQEGCDKFCTFC 193
           + G+R + T +S+         V   +N          RK    AF+ I  GCDKFCT+C
Sbjct: 160 KNGERKL-TAFSLPRTAGSRDRVAASFNEFDPARRKEARKVPFQAFVRIMMGCDKFCTYC 218

Query: 194 VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS 253
           +VP  RG E SR   ++V+E R L+D G  E+TLLGQ VN++R K  DG   +F+DLL  
Sbjct: 219 IVPSVRGPEQSRHPDEIVEEVRNLVDQGTREVTLLGQTVNSYRHKTPDGRITSFADLLAK 278

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
           L +I GL R+++ T++P DM+D L+ A  DL  +  YLH+P QSG D++LK M R +T  
Sbjct: 279 LHDIDGLRRIKFVTNYPNDMTDELLAAIRDLPRISRYLHVPAQSGCDQVLKRMKRGYTVG 338

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
            Y  ++ RIR   P+ A++SDFIVGF GET+  F+ T+DLV +  +  +F FKYSPR GT
Sbjct: 339 LYNDMMARIRETLPEAAVTSDFIVGFCGETEASFQKTVDLVRRWRFKNSFIFKYSPREGT 398

Query: 374 PGSNML-EQVDENVKAER---LLCLQK--KLREQQVSFNDACVGQIIEVLIEKHGKEKGK 427
              N+  + V E VK  R   LL +Q    L +QQ     A VG+ +E+L+E   K   K
Sbjct: 399 KAYNLFPDDVPEAVKRRRNNELLAVQNAIALEDQQ-----AFVGRTVEILVEGPSKAHLK 453

Query: 428 LVG 430
             G
Sbjct: 454 AAG 456


>gi|306821117|ref|ZP_07454733.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
 gi|304550810|gb|EFM38785.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
          Length = 475

 Score =  309 bits (791), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 174/447 (38%), Positives = 269/447 (60%), Gaps = 17/447 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++F + ++GCQMN +DS  ++ M  + GYE  N + DAD+++ NTC IRE A  + +  +
Sbjct: 37  KKFIIVTFGCQMNEHDSENIKGMLTNMGYEETNKIYDADVVLYNTCAIRENAETRFFGNI 96

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G ++N+K    K   ++++   GC+ Q     +E+  +   VN++ G    Y+ PELL  
Sbjct: 97  GALKNIK----KNKPNMIIATCGCMMQEPHIVKELTSKYKHVNIIFGTHNIYKFPELLYT 152

Query: 143 --ARFGKRVVDTDYSVEDKFERLSIVDGGYN-RKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
             +   K  V   + ++      +IV+G  + R+    AF+ I  GC+ FCT+C+VP+TR
Sbjct: 153 YISLIDKETVVDVWDIDG-----NIVEGLPSVRRYDFKAFVNIMYGCNNFCTYCIVPFTR 207

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G E SR    ++DE + L  N V EITLLGQNVN++     D  K +F  LL  ++++  
Sbjct: 208 GRERSRLPKDILDEVKLLAQNNVKEITLLGQNVNSYGNNFTD--KYSFPMLLEDINKVDN 265

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           + R+R+ TSHP+D+SD LI++ G LD L  YLHLPVQ+GSD +LK MNR++TAY+Y + I
Sbjct: 266 IRRIRFMTSHPKDISDELIESFGRLDKLCDYLHLPVQAGSDSVLKRMNRKYTAYDYMKKI 325

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
           ++I+ V PDIA+++D IVGFPGET++DF+ T+ +V ++ Y  AF F YS R GT    M 
Sbjct: 326 EKIKKVVPDIALTTDIIVGFPGETEEDFQQTLKIVKEVEYDSAFMFMYSTRKGTAAEKME 385

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRSPWLQSV 438
           + +DE +K +R   L +   E     N   +G I EVL+E   K+ +  L GR+   + +
Sbjct: 386 DHIDEEIKKDRFNRLLETANEIAAKKNKQYLGNIEEVLVEGFSKKNESVLSGRNTKSKLI 445

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYG 465
                   IG ++KV+ITDVK  +L G
Sbjct: 446 NFIGDETKIGQLVKVKITDVKSFSLNG 472


>gi|297559650|ref|YP_003678624.1| RNA modification enzyme, MiaB family [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296844098|gb|ADH66118.1| RNA modification enzyme, MiaB family [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
          Length = 496

 Score =  309 bits (791), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 172/441 (39%), Positives = 265/441 (60%), Gaps = 25/441 (5%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           + V++YGCQMNV+DS R+  +    GY R      AD++V NTC +RE A  ++Y  LG 
Sbjct: 7   YQVRTYGCQMNVHDSERLSGLLEDAGYARAAEDTTADIVVFNTCAVRENADNRLYGNLGH 66

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           +R +K++       + + V GC+AQ +  EI+RR+P V+VV G      LP LLER+R  
Sbjct: 67  LRPVKDANPG----MQIAVGGCLAQKDRGEIVRRAPWVDVVFGTHNIGSLPALLERSRVQ 122

Query: 147 KRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           +   V+   S+E     L        R+    A++++  GC+  CTFC+VP  RG E  R
Sbjct: 123 REAQVEIAESLEHFPSTLP-----SRRESAYAAWVSVSVGCNNTCTFCIVPALRGKEQDR 177

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
               V+ E R L+D GV EITLLGQNVNA+ G G  G++  FS LL +  EI+GL R+R+
Sbjct: 178 RPGDVLAEVRALVDEGVSEITLLGQNVNAY-GSGF-GDRQAFSKLLRACGEIEGLERVRF 235

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
           T+ HPRD +D +I+A  +   +MP LH+P+QSGS R+LK+M R +    +  I++++R+ 
Sbjct: 236 TSPHPRDFTDDVIEAMAETPNVMPQLHMPLQSGSSRVLKAMRRSYRQERFLGIVEKVRAA 295

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P  AI++D IVGFPGET++DF+ T+ +V +  ++ AF+F+YS R GTP + M +QV   
Sbjct: 296 MPHAAITTDIIVGFPGETEEDFQETLHVVREARFSMAFTFQYSKRPGTPAATMDDQVPPE 355

Query: 386 V---KAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKG---KLVGRSP---WL 435
           V   + +RL+ LQ ++  ++   N   VG+ +E+L+ E  G++ G   +L GR+P    +
Sbjct: 356 VVKDRYQRLVDLQDQISWEE---NQKLVGREVELLVAEGEGRKDGEHRRLSGRAPDNRLV 412

Query: 436 QSVVLNSKNHNIGDIIKVRIT 456
              V +  +   GD + V +T
Sbjct: 413 HFAVGDGDDPRPGDTVTVEVT 433


>gi|325846562|ref|ZP_08169477.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
 gi|325481320|gb|EGC84361.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
          Length = 450

 Score =  309 bits (791), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 173/449 (38%), Positives = 269/449 (59%), Gaps = 19/449 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +++ + ++GCQMN +DS R+  +    GY   +  ++AD I+ NTC +RE A  K+Y  +
Sbjct: 16  KKYNITTFGCQMNEHDSERISYILEDLGYTLTDDRNEADFILFNTCLVRENAELKLYGQV 75

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAE--GEEILRRSPIVNVVVGPQTYYRLPELL-E 141
             ++ LK    +E  + ++ V+GC+ Q     E I ++   V+++ G +    LP+LL +
Sbjct: 76  SSLKKLK----EENPEKIIAVSGCMMQTSVAREVIEKKHKEVDIIFGTKNINSLPDLLFK 131

Query: 142 RARFGKRVVD-TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
               G+RV+D ++ +V+D +         YN K    A++ I  GCD FC++C+VP +RG
Sbjct: 132 YLETGERVIDVSEDNVKDDY-------VNYNSKNNFQAYVNIMTGCDNFCSYCIVPQSRG 184

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E SR  S +++E   L++NG  EITLLGQNVN++  K       TF +LL   ++IKGL
Sbjct: 185 REESRRPSHIIEEIENLVNNGYKEITLLGQNVNSYGNKS--DFNVTFPELLEKCAQIKGL 242

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            RLR+TTSHP+D+SD LI+   + D +  Y HLP+QSGSD++LK MNR++   +Y +   
Sbjct: 243 ERLRFTTSHPKDLSDDLIRVIKENDNICNYFHLPMQSGSDKVLKDMNRKYNKEQYLEKAR 302

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R   P+IAIS+D IVG+P ET++DF+ T+D+  K+G+  AF+FKYSPR  T  +  LE
Sbjct: 303 KLREEIPNIAISTDIIVGYPTETEEDFQETLDVCRKVGFDTAFTFKYSPRPKTKAAK-LE 361

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVV 439
            +DE +  +R   L   L       N   VG+++EVL+E   K  K  L GR+   + V 
Sbjct: 362 TIDEKIVQDRFDRLLDTLYPVFNEKNKEYVGKVVEVLLESESKNNKNVLTGRTDTFKLVH 421

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
           + +    IG I+KV+ITD    T+ G LV
Sbjct: 422 VEADKKLIGQIVKVKITDNTSFTISGHLV 450


>gi|158337776|ref|YP_001518952.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Acaryochloris
           marina MBIC11017]
 gi|229890405|sp|B0C0E2|MIAB_ACAM1 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|158308017|gb|ABW29634.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Acaryochloris marina
           MBIC11017]
          Length = 454

 Score =  309 bits (791), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 182/458 (39%), Positives = 283/458 (61%), Gaps = 35/458 (7%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +R+ + +YGCQMN  DS RM  +  + GY+   + DDA+LI+ NTC IR+ A  KVYS+L
Sbjct: 6   RRYHITTYGCQMNKADSERMAGVLENMGYQWSENPDDANLILCNTCTIRDNAEHKVYSYL 65

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR    K+++     DL +VVAGCVAQ EG+ +LRR P +++V+GPQ   RL +LLE+  
Sbjct: 66  GRQAKRKHAQ----PDLTLVVAGCVAQQEGDALLRRVPELDLVMGPQHANRLQDLLEQVA 121

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKR--GVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            G++V+ T        E + IV+     +R   VTA++ +  GC++ CT+CVVP  RG+E
Sbjct: 122 SGQQVLAT--------EPIHIVEDITKPRRDSAVTAWVNVIYGCNERCTYCVVPNVRGVE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG------EKCTFSDLLYSLSE 256
            SR+   +  E  +L + G  E+TLLGQN++A+ G+ L G       + T +DLLY + +
Sbjct: 174 QSRTPEAIRAEMVQLGEQGFKEVTLLGQNIDAY-GRDLPGTTSEGRHQHTLTDLLYFVHD 232

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           + G+ R+R+ TSHPR  ++ LI+A  +L  +  + H+P QSG + +LK+M+R +T  +YR
Sbjct: 233 VPGIERIRFATSHPRYFTERLIQACYELPKVCEHFHIPFQSGDNDVLKAMSRGYTHEKYR 292

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
           +IID IR++ PD +IS+D IVGFPGET++ F  TM LV+ I +    +  YSPR GTP +
Sbjct: 293 RIIDNIRAIMPDASISADAIVGFPGETEEQFMNTMQLVEDIEFDLLNTAAYSPRPGTPAA 352

Query: 377 NMLEQVDENVKAERLLCLQK------KLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLV 429
               Q+ E VKA+RL  L +      +LR Q+ +       +I EVL+E ++ K+  +++
Sbjct: 353 LWDNQLSEEVKADRLQRLNRLVGVCAELRSQRYA------NRIEEVLVEDQNPKDPTQVM 406

Query: 430 GRSPWLQSVVLNSKNHNI-GDIIKVRITDVKISTLYGE 466
           GR+   +          + G+II V++T+V+  +L GE
Sbjct: 407 GRTRGNRLTFFPGNIEQLRGEIIAVKVTEVRSFSLTGE 444


>gi|329939964|ref|ZP_08289246.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Streptomyces
           griseoaurantiacus M045]
 gi|329300790|gb|EGG44686.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Streptomyces
           griseoaurantiacus M045]
          Length = 499

 Score =  309 bits (791), Expect = 8e-82,   Method: Compositional matrix adjust.
 Identities = 178/460 (38%), Positives = 272/460 (59%), Gaps = 28/460 (6%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERV--NSMDDADLIVLNTCHIREKAAEKV 80
            P+ + +++YGCQMNV+DS R+  +    GY R   +S  DAD++V NTC +RE A  ++
Sbjct: 5   APKSYEIRTYGCQMNVHDSERLSGLLEDAGYVRAPEDSDGDADVVVFNTCAVRENADNRL 64

Query: 81  YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140
           Y  LGR+   K SR      + + V GC+AQ + + I++++P V+VV G     +LP LL
Sbjct: 65  YGNLGRLAPRKASRP----GMQIAVGGCLAQKDRDTIVKKAPWVDVVFGTHNIGKLPVLL 120

Query: 141 ERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           ERAR  +   V+   S+E     L        R+    A+++I  GC+  CTFC+VP  R
Sbjct: 121 ERARVQEEAQVEIAESLEAFPSTLPT-----RRESAYAAWVSISVGCNNTCTFCIVPALR 175

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIK 258
           G E  R    V+ E   L+  GV EITLLGQNVNA+   G D G++  FS LL +   I+
Sbjct: 176 GKEKDRRPGDVLAEVEALVAEGVSEITLLGQNVNAY---GSDIGDREAFSKLLRACGNIE 232

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           GL R+R+T+ HPRD +D +I+A  +   +MP LH+P+QSGSD +LK+M R +    Y  I
Sbjct: 233 GLERVRFTSPHPRDFTDDVIEAMAETPNVMPQLHMPLQSGSDTVLKAMRRSYRQERYLGI 292

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           I+++R+  P  AI++D IVGFPGET++DF  T+ +V +  +AQAF+F+YS R GTP + M
Sbjct: 293 IEKVRAAIPHAAITTDIIVGFPGETEEDFEQTLHVVREARFAQAFTFQYSKRPGTPAATM 352

Query: 379 LEQVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKG---KLVGR 431
            +Q+ + V   + ERL+ LQ+++  ++   N   VG+ +E+++ E  G++ G   +L GR
Sbjct: 353 EDQIPKKVVQARYERLVALQEEISWEE---NKKQVGRTLELMVAEGEGRKDGATHRLSGR 409

Query: 432 SPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELVV 469
           +P  + V        +  GD++ V +T      L  E  V
Sbjct: 410 APDNRLVHFTKPEQEVRPGDMVTVEVTYAAPHHLLSEGAV 449


>gi|194476570|ref|YP_002048749.1| hypothetical protein PCC_0084 [Paulinella chromatophora]
 gi|171191577|gb|ACB42539.1| hypothetical protein PCC_0084 [Paulinella chromatophora]
          Length = 470

 Score =  309 bits (791), Expect = 8e-82,   Method: Compositional matrix adjust.
 Identities = 175/456 (38%), Positives = 271/456 (59%), Gaps = 27/456 (5%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           +++ ++GCQMN  DS RM  +  S GY+   S  +ADL++ NTC IR+ A +KVYS+LGR
Sbjct: 28  YWITTFGCQMNKADSERMAGILESIGYQIAPSEHEADLVLYNTCTIRDSAEQKVYSYLGR 87

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
               +  R +    ++++VAGCVAQ EG  +LRR P +++V+GPQ   RL  LL +   G
Sbjct: 88  ----QAQRKRTNPHIILIVAGCVAQQEGASLLRRVPEIDLVMGPQQTNRLSYLLSQVENG 143

Query: 147 KRVVDTD--YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
           ++V+ T+  Y +ED      I +    R+  V  ++ +  GC++ CT+CVVP  RG E S
Sbjct: 144 QQVIATEESYILED------ITNA--RRESSVCGWVNVVYGCNERCTYCVVPSVRGKEQS 195

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG------EKCTFSDLLYSLSEIK 258
           R    +  E   L   G  E+TLLGQNV+A+ G+ L G         T + LLY + E+K
Sbjct: 196 RLPESIKMEMEILATQGFREVTLLGQNVDAY-GRDLAGISPEGRRHNTLTALLYFVHEVK 254

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           G+ R+R+ TSHPR  ++ LI+A  +L  +  + H+P QSG D +LK+M R +    Y +I
Sbjct: 255 GINRIRFATSHPRYFTERLIEACSNLSKVCEHFHIPCQSGDDEVLKTMARGYNVDRYYRI 314

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           +DRIRS  PD +IS+D IV FPGETD  ++ T++LV+K+G+ Q  +  YSPR  TP SN 
Sbjct: 315 VDRIRSRMPDASISADIIVAFPGETDTQYQRTLELVEKVGFDQVNTAAYSPRPNTPASNW 374

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRS----- 432
             QVDE +K ERL  L   + ++    +   + +I E+LIE  + K+  + +GR+     
Sbjct: 375 SIQVDERIKVERLQQLNSLVEKKAFERSKRYLNRIEEILIEGLNPKDSNQFMGRTRSNRL 434

Query: 433 PWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            +  +     K++  GD++ V+I +++  +L G L+
Sbjct: 435 TFFPTHTSKGKSYTYGDLVMVKIKEIRAFSLTGTLL 470


>gi|169824439|ref|YP_001692050.1| 2-methylthioadenine synthetase [Finegoldia magna ATCC 29328]
 gi|302380704|ref|ZP_07269169.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Finegoldia magna
           ACS-171-V-Col3]
 gi|229890534|sp|B0S1C0|MIAB_FINM2 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|167831244|dbj|BAG08160.1| 2-methylthioadenine synthetase [Finegoldia magna ATCC 29328]
 gi|302311647|gb|EFK93663.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Finegoldia magna
           ACS-171-V-Col3]
          Length = 461

 Score =  309 bits (791), Expect = 8e-82,   Method: Compositional matrix adjust.
 Identities = 175/446 (39%), Positives = 271/446 (60%), Gaps = 16/446 (3%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           + + ++GCQMN +DS +++ +  + G+E+ +   DAD I+ NTC +RE A  KVY  LG 
Sbjct: 27  YSIITHGCQMNEHDSEKIKTLLENMGFEKSDEKLDADFIIFNTCLVRENAEMKVYGQLGA 86

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQA-EGEEILR-RSPIVNVVVGPQTYYRLPELLERA- 143
           ++NLK    +E  D+L+ V GC+ Q     +I+R + P V++V G      LP L++R  
Sbjct: 87  LKNLK----RENPDMLIAVCGCMMQTGPARDIIREKYPQVDIVFGVNNINSLPYLIDRHL 142

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             GK VVD +   +D  E ++I      R      ++ I  GC+ FCT+C+VPY RG E 
Sbjct: 143 SSGKLVVDIERK-DDIDEDITI-----KRDNEYVGYVNIMTGCNNFCTYCIVPYARGREQ 196

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SRS+  ++ E ++++D G  +ITLLGQNVN++ GK L+    TF++LL  +++++GL RL
Sbjct: 197 SRSVESILSEVKRMVDQGYKDITLLGQNVNSY-GKTLEN-PVTFTELLTKVNDVEGLERL 254

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+ TSHP+D+SD LI+A G LD +   +HLP Q+GS+ +L+ M+RR+T   Y + +++++
Sbjct: 255 RFLTSHPKDISDELIEAMGKLDKVCENIHLPFQAGSNSVLERMHRRYTKESYLEKVEKLK 314

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
                I  S+D IVGFPGET++DF+ T+D+V K+GY QAF+FKY+ R GT      +QVD
Sbjct: 315 KSVKGITFSTDIIVGFPGETEEDFQDTLDVVRKVGYEQAFTFKYNRRPGTKADLFEDQVD 374

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVLNS 442
           E+VK +RL  L           N + +G I EVLIE   K   + + GR+   + V +  
Sbjct: 375 EDVKQDRLERLLDVAYPIFYEKNKSYLGTIQEVLIEGESKNNPEVMTGRTRTFKLVNVKC 434

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
               IG ++  +I D     L GE+V
Sbjct: 435 DKSYIGKLVNTKIVDFNSFALTGEMV 460


>gi|317129126|ref|YP_004095408.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cellulosilyticus
           DSM 2522]
 gi|315474074|gb|ADU30677.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cellulosilyticus
           DSM 2522]
          Length = 516

 Score =  308 bits (790), Expect = 8e-82,   Method: Compositional matrix adjust.
 Identities = 175/448 (39%), Positives = 262/448 (58%), Gaps = 15/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++F +++YGCQMN +DS  M  +  + G+E  ++ DDAD+I+LNTC IRE A  KV+  +
Sbjct: 73  KKFLIRTYGCQMNEHDSENMAGILLNMGFESTSNSDDADVILLNTCAIRENAENKVFGEI 132

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G ++ +K  R     +L+V V GC++Q E     IL++   V+++ G    +RLP LL+ 
Sbjct: 133 GHLKTMKRER----PELIVGVCGCMSQEESVVNRILQKHQHVDLIFGTHNIHRLPTLLKN 188

Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           A F K +V   +S E D  E +        RK  +  ++ I  GCDKFCT+C+VPYTRG 
Sbjct: 189 AIFNKEMVVEVWSKEGDIIENMPRA-----RKGQIQGWVNIMYGCDKFCTYCIVPYTRGK 243

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR    +++E R L  NG  EITLLGQNVNA+ GK L        DL+  + +I  + 
Sbjct: 244 ERSRRPEDIIEEVRHLARNGYKEITLLGQNVNAY-GKDLVDMDYGLGDLMDEIRKID-IP 301

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHP+D  D LI+       L+ ++HLPVQSG+  +LK M R++T  EY  +  +
Sbjct: 302 RVRFTTSHPKDFDDHLIEVLAKGGNLVEHIHLPVQSGNSDVLKLMARKYTREEYVTLAKK 361

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I+   P  + ++D IVGFP ETD  F  T+ LV ++ Y  A+++ YSPR GTP + M + 
Sbjct: 362 IKEAIPHASFTTDIIVGFPNETDAQFEDTLSLVREMEYDSAYTYVYSPREGTPAAKMNDN 421

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440
           +   VK ERL  L   + E     N +  G+++EVL+E   K+    L GR+   + V  
Sbjct: 422 IPMEVKKERLQRLNALVNEISAEKNKSYQGRVVEVLVEGESKKNPDILAGRTRTNRLVNF 481

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                +IG+I+ V+IT+ K  +L G +V
Sbjct: 482 KGAKSSIGEIVYVKITEAKSWSLDGHVV 509


>gi|297202829|ref|ZP_06920226.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Streptomyces sviceus ATCC
           29083]
 gi|297148220|gb|EFH28901.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Streptomyces sviceus ATCC
           29083]
          Length = 508

 Score =  308 bits (790), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 178/456 (39%), Positives = 268/456 (58%), Gaps = 28/456 (6%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERV--NSMDDADLIVLNTCHIREKAAEKVY 81
           P+ + V++YGCQMNV+DS R+  +    GY      S  DAD++V NTC +RE A  ++Y
Sbjct: 16  PKTYEVRTYGCQMNVHDSERLSGLLEEAGYVPAPEGSDGDADVVVFNTCAVRENADNRLY 75

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR+   K SR      + + V GC+AQ + + I++R+P V+VV G     +LP LLE
Sbjct: 76  GNLGRLAPRKASRP----GMQIAVGGCLAQKDRDTIVQRAPWVDVVFGTHNIGKLPVLLE 131

Query: 142 RARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           RAR  +   V+   S+E     L        R+    A+++I  GC+  CTFC+VP  RG
Sbjct: 132 RARVQEEAQVEIAESLEAFPSTLPT-----RRESAYAAWVSISVGCNNTCTFCIVPALRG 186

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKG 259
            E  R    ++ E   L+  GV EITLLGQNVNA+   G D G++  FS LL +   I+G
Sbjct: 187 KEKDRRTGDILAEIEALVGEGVSEITLLGQNVNAY---GSDIGDREAFSKLLRACGSIEG 243

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           L R+R+T+ HPRD +D +I+A  +   +MP LH+P+QSGSD +LK+M R +    Y  II
Sbjct: 244 LERVRFTSPHPRDFTDDVIEAMAETPNVMPQLHMPLQSGSDTVLKAMRRSYRQERYLGII 303

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
           +++R+  PD AIS+D IVGFPGET++DF  TM +V +  +  AF+F+YS R GTP + M 
Sbjct: 304 EKVRAAMPDAAISTDIIVGFPGETEEDFEQTMHVVRQARFTNAFTFQYSKRPGTPAATMD 363

Query: 380 EQVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKG---KLVGRS 432
            Q+ + +   + ERL+ LQ+++  ++   N   VG+ +E+++ E  G++ G   +L GR+
Sbjct: 364 GQIPKEIVQSRYERLVALQEEISWEE---NKKQVGRTLELMVAEGEGRKDGATHRLSGRA 420

Query: 433 PWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGE 466
           P  + V     +  +  GD++ V IT      L  E
Sbjct: 421 PDNRLVHFTKPDQEVRPGDVVTVEITYAAPHHLLAE 456


>gi|329956412|ref|ZP_08297009.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacteroides clarus YIT
           12056]
 gi|328524309|gb|EGF51379.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacteroides clarus YIT
           12056]
          Length = 455

 Score =  308 bits (790), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 172/451 (38%), Positives = 271/451 (60%), Gaps = 20/451 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F+++YGCQMNV DS  +  +    GY    ++++AD + +NTC IR+ A +K+ + L
Sbjct: 18  KKLFIETYGCQMNVADSEVIASVMQMAGYSVAETLEEADAVFMNTCSIRDNAEQKILNRL 77

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
               +LK    K+  +L+V V GC+A+   ++++     V++VVGP  Y  LP+L+    
Sbjct: 78  EFFHSLK----KKKKNLIVGVLGCMAERVKDDLITNHH-VDLVVGPDAYLTLPDLIAAVE 132

Query: 145 FGKRVVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            G++ ++ + S  + +  +  S + G +     ++ F++I  GC+ FCT+C+VPYTRG E
Sbjct: 133 AGEKAINVELSTTETYRDVIPSRICGNH-----ISGFVSIMRGCNNFCTYCIVPYTRGRE 187

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR +  +++E   L+  G  E+TLLGQNVN++R +  DGE  TF  LL +++E    VR
Sbjct: 188 RSRDVESILNEVADLVAKGYKEVTLLGQNVNSYRFEKADGEVITFPALLRTVAESAPGVR 247

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP+DMSD  ++   ++  +  ++HLPVQSGS RILK MNR++T   Y + +D I
Sbjct: 248 IRFTTSHPKDMSDETLQVIAEVPNVCKHIHLPVQSGSSRILKLMNRKYTREWYLERVDAI 307

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML-EQ 381
           R + PD  +S+D   GF  ET++D R ++ L+++ GY  AF FKYS R GT  S  L + 
Sbjct: 308 RRIIPDCGLSTDIFSGFHSETEEDHRLSLSLMEECGYDAAFMFKYSERPGTYASKHLPDD 367

Query: 382 VDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQS 437
           V E VK  RL   + LQ +L  +    N  CVG+  EVL+E   K  + +L GR+   + 
Sbjct: 368 VPEEVKIRRLNEIIALQNRLSAEA---NARCVGKTYEVLVEGVSKRSRDQLFGRTEQNRV 424

Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           VV +   H  GD + V+IT+   +TL GE V
Sbjct: 425 VVFDRGTHRTGDFVTVKITESSSATLKGEEV 455


>gi|308373494|ref|ZP_07667593.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Mycobacterium
           tuberculosis SUMu005]
 gi|308375495|ref|ZP_07668037.1| conserved alanine and arginine rich protein [Mycobacterium
           tuberculosis SUMu007]
 gi|308337478|gb|EFP26329.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Mycobacterium
           tuberculosis SUMu005]
 gi|308346063|gb|EFP34914.1| conserved alanine and arginine rich protein [Mycobacterium
           tuberculosis SUMu007]
          Length = 515

 Score =  308 bits (790), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 172/462 (37%), Positives = 269/462 (58%), Gaps = 27/462 (5%)

Query: 23  VPQRFF-VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
            P R + V++YGCQMNV+DS R+  +  + GY R     +AD++V NTC +RE A  ++Y
Sbjct: 25  APARTYQVRTYGCQMNVHDSERLAGLLEAAGYRRATDGSEADVVVFNTCAVRENADNRLY 84

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             L  +      R +   D+ + V GC+AQ + + +LRR+P V+VV G      LP LLE
Sbjct: 85  GNLSHL----APRKRANPDMQIAVGGCLAQKDRDAVLRRAPWVDVVFGTHNIGSLPTLLE 140

Query: 142 RARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           RAR  K   V+   +++     L       +R+    A+++I  GC+  CTFC+VP  RG
Sbjct: 141 RARHNKVAQVEIAEALQQFPSSLP-----SSRESAYAAWVSISVGCNNSCTFCIVPSLRG 195

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW----RGKGLDGEKCTFSDLLYSLSE 256
            E+ RS + ++ E R L+++GV E+TLLGQNVNA+        L   +  F++LL +  +
Sbjct: 196 REVDRSPADILAEVRSLVNDGVLEVTLLGQNVNAYGVSFADPALPRNRGAFAELLRACGD 255

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           I GL R+R+T+ HP + +D +I+A      + P LH+P+QSGSDRIL++M R + A  Y 
Sbjct: 256 IDGLERVRFTSPHPAEFTDDVIEAMAQTRNVCPALHMPLQSGSDRILRAMRRSYRAERYL 315

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
            II+R+R+  P  AI++D IVGFPGET++DF AT+D+V +  +A AF+F+YS R GTP +
Sbjct: 316 GIIERVRAAIPHAAITTDLIVGFPGETEEDFAATLDVVRRARFAAAFTFQYSKRPGTPAA 375

Query: 377 NMLEQVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK----GKLV 429
            +  Q+ + V   + ERL+ LQ+++    +  N A VGQ +EVL+      K     ++ 
Sbjct: 376 QLDGQLPKAVVQERYERLIALQEQI---SLEANRALVGQAVEVLVATGEGRKDTVTARMS 432

Query: 430 GRSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELVV 469
           GR+   + V   +    +  GD+I  ++T+     L  +  V
Sbjct: 433 GRARDGRLVHFTAGQPRVRPGDVITTKVTEAAPHHLIADAGV 474


>gi|311233220|gb|ADP86074.1| RNA modification enzyme, MiaB family [Desulfovibrio vulgaris RCH1]
          Length = 476

 Score =  308 bits (790), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 179/452 (39%), Positives = 261/452 (57%), Gaps = 26/452 (5%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           F ++++GCQMNV DS  +      +G+       +A L ++NTC +R+K  +KVYS LGR
Sbjct: 33  FHIETFGCQMNVNDSDWLARALMERGFSPA-PFGEARLTIVNTCSVRDKPEQKVYSLLGR 91

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER--AR 144
           IR   + +     D  V V GCVAQ  G     R P V +V G       P+ L+R    
Sbjct: 92  IRQATSKK----PDAFVAVGGCVAQQIGSGFFSRFPQVRLVFGTDGLAMAPQALDRLVEE 147

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
              ++   D+S ED  ER +++  G       + F+ I +GCD FC +C+VPYTRG + S
Sbjct: 148 PDLKLSLLDFS-EDYPERDAVLGQG---AVPASVFVNIMQGCDNFCAYCIVPYTRGRQKS 203

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R+   ++DE R L+D G  EITLLGQNVN++ G+   G+  TF+ LL+ ++ + GL RLR
Sbjct: 204 RATGTILDECRALLDRGAREITLLGQNVNSF-GQDSHGDGTTFAQLLHKVAALPGLERLR 262

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           + T HP+D++  +++A G L  L P LHLP+Q+GSDRILK M RR+    Y +I+D +R+
Sbjct: 263 FVTPHPKDIAPEVVEAFGTLPNLCPRLHLPLQAGSDRILKLMGRRYDMARYLRIVDDLRA 322

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
            RPDI +SSD IVGFPGET++DF  TMD ++ +GYA ++SF YS R GT    + +++  
Sbjct: 323 ARPDIVLSSDIIVGFPGETEEDFMETMDALETVGYAASYSFCYSDRPGTRAEMLPDKLSR 382

Query: 385 NVKAERLLCLQKKLREQQVSFNDAC----VGQIIEVLIE----KHGKEKGKLVGRSPW-- 434
            VK ERL    ++L+  Q    + C    VG+ +EVL+E    K G E     GR P+  
Sbjct: 383 EVKLERL----ERLQTLQNRLTERCLQDMVGRKVEVLLEGMSRKPGDEGDSWQGRDPYGN 438

Query: 435 LQSVVLNSKNHNIGDIIKVRITDVKISTLYGE 466
           L +V L   +   G  + V +   K  +L  E
Sbjct: 439 LVNVALPQGSDVRGRFLPVVVAQAKKHSLLAE 470


>gi|224369269|ref|YP_002603433.1| MiaB [Desulfobacterium autotrophicum HRM2]
 gi|223691986|gb|ACN15269.1| MiaB [Desulfobacterium autotrophicum HRM2]
          Length = 460

 Score =  308 bits (790), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 174/409 (42%), Positives = 249/409 (60%), Gaps = 15/409 (3%)

Query: 28  FVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRI 87
           ++ + GCQMN YD+ R+  +    GY + N +  AD+IV NTC IREKA EK +SFLGR+
Sbjct: 17  YIYTIGCQMNTYDTERLFFILGGLGYVKTNDLHRADIIVCNTCSIREKAQEKAFSFLGRV 76

Query: 88  RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147
             LK ++      L+ ++ GCVAQ E EE+ +R+  +++V+G Q + RL   +     G+
Sbjct: 77  PPLKKAK----PHLITIMTGCVAQQEAEEVFKRNACIDIVLGTQAFSRLGGHIMNVLNGR 132

Query: 148 -RVVDTDYS--VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            ++ D + S  + +     S +D   N K  V+ F+TI +GCD FCT+CVVPY RG E S
Sbjct: 133 GQITDVEDSPAIYEAMPDFSFID---NDK--VSRFVTIMQGCDNFCTYCVVPYVRGRERS 187

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R+   +V+E   L D GV E+TLLGQNVN++   G   + C+FSDLL  +S + G+ R+R
Sbjct: 188 RTPESIVEEISILADAGVKEVTLLGQNVNSY---GQKEQICSFSDLLEQISRVSGIERIR 244

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           + TSHP+D+SD LI A  D+D +   LHLPVQSGS+RILK MNR +T  +Y + + ++R 
Sbjct: 245 FATSHPKDLSDDLIYAIRDIDKVCNQLHLPVQSGSNRILKKMNRGYTKEQYLERVGKLRK 304

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             P IA+SSD I+GFP ET  DF  TMDLV ++ +   F+F YS R   P S   + V++
Sbjct: 305 NCPSIALSSDMIIGFPSETRADFDETMDLVRRVEFDGIFAFAYSDRPQAPASKFSDGVED 364

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSP 433
             K ERL  L +   E     N A VG   +VL+E   ++K    G +P
Sbjct: 365 AEKMERLNELIQFQDEMTHQKNQALVGAWEQVLVEGLSQKKRHDEGENP 413


>gi|332976877|gb|EGK13699.1| tRNA-I(6)A37 modification enzyme MiaB [Desmospora sp. 8437]
          Length = 495

 Score =  308 bits (790), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 177/448 (39%), Positives = 266/448 (59%), Gaps = 15/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +++ +K+YGCQMNV+DS  +  +    GY      ++A +I++NTC IRE A +KV+  +
Sbjct: 49  KKYLIKTYGCQMNVHDSETIAGILELMGYRPTEVEEEAAVILINTCAIRENAEDKVFGEI 108

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           GR++ LK     E  +L++ + GC++Q E     IL++   V+++ G    +RLP LL  
Sbjct: 109 GRLKTLKT----EKPELVLGMCGCMSQEESVVNRILQKHQHVDLIFGTHNIHRLPHLLRE 164

Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           A   K +V   +S E D  E L  V     R+ G+ A++ I  GCDKFCT+C+VPYTRG 
Sbjct: 165 ALMSKEMVVEVWSKEGDIVENLPKV-----REDGLKAWVNIMYGCDKFCTYCIVPYTRGK 219

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR    V+ E R L   G  E+TLLGQNVNA+ GK  +     F DL+  + +I G+ 
Sbjct: 220 ERSRRPEDVLAEIRDLARKGYREVTLLGQNVNAY-GKDFEDRDYRFGDLMEDVRKI-GIP 277

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHPRD  D LI+       L+ ++HLP QSG++ ILK M R++T   + +++ +
Sbjct: 278 RVRFTTSHPRDFDDHLIEVLARRGNLVEHIHLPAQSGNNAILKIMARKYTRERFLELVAK 337

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I++  PD+ +++D IVG+PGET++ F  T+ L+ ++ +  AF+F YSPR GTP + M + 
Sbjct: 338 IKAAIPDVVLTTDIIVGYPGETEEQFEDTLSLMREVEFDSAFTFIYSPREGTPAAKMKDD 397

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSPWLQSVVL 440
           V  NVK ERL  L     E     N A   Q++EVL+E +  K+   L GR+   + V  
Sbjct: 398 VPMNVKKERLYRLNHLQDEISRKKNLALKDQVVEVLVEGESKKDPNVLSGRTRTNKLVNF 457

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
               H IG+  +VRIT+ +  TL GE V
Sbjct: 458 QGPKHLIGEFAQVRITEPRTWTLKGEWV 485


>gi|258515352|ref|YP_003191574.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Desulfotomaculum
           acetoxidans DSM 771]
 gi|257779057|gb|ACV62951.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Desulfotomaculum
           acetoxidans DSM 771]
          Length = 451

 Score =  308 bits (790), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 181/446 (40%), Positives = 270/446 (60%), Gaps = 18/446 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +++ + ++GCQMN +DS  +  +  ++GY + +  +DAD+I+LNTC IRE A  KVY  L
Sbjct: 11  KKYLIITFGCQMNEHDSEILAGILHNKGYIKTDKQEDADIILLNTCCIRETAESKVYGML 70

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQ-AEGEEILR-RSPIVNVVVGPQTYYRLPELLER 142
           GR+R LK    K   DL++ V GC+ Q AE  + LR R P V+++ G    + L +LL++
Sbjct: 71  GRLRRLK----KSNPDLVLGVCGCMTQQAEAAKKLRQRFPYVDLIFGTHNSHLLSDLLDK 126

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKR--GVTAFLTIQEGCDKFCTFCVVPYTRG 200
                 V++    V D +  ++ V G    +R  G+ A + I  GC+ FCT+C+VPY RG
Sbjct: 127 ------VMEKREPVLDVWSDVAPVTGELPVQRVSGIKALVNITYGCNNFCTYCIVPYVRG 180

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E SRS   ++ E   L+  G  E+TLLGQNVN++ GK L      F+DLL  L E  G+
Sbjct: 181 RERSRSPEDILQEVGGLVIAGYKEVTLLGQNVNSY-GKDLKN-PLDFADLLLML-EDTGI 237

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+RY TSHPRD SD LI+       +  + HLPVQ+GS+RIL+ MNR +T   Y +++D
Sbjct: 238 ERIRYMTSHPRDFSDKLIQVIAKSKKVCEHFHLPVQAGSNRILRLMNRGYTRENYLELVD 297

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           +IR   P   I++D IVGFPGET+ DF AT+DL++K+    A++F Y+ R GTP +NM E
Sbjct: 298 KIRCAVPQAGITTDIIVGFPGETEADFAATLDLLEKVRCYSAYTFVYNKRSGTPAANMQE 357

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440
           Q++  VK  R+  L K   +  ++ N+A VG+I++VL+E  GK    L GR+   + VV 
Sbjct: 358 QIEATVKKARIQELIKMQNKISLADNEAEVGRILDVLVEGPGKTGNNLTGRTRTNKLVVF 417

Query: 441 NSK-NHNIGDIIKVRITDVKISTLYG 465
            ++ N   G  + V+I   ++S L G
Sbjct: 418 AAQANFLTGQTVPVKIIKGRLSHLDG 443


>gi|323718661|gb|EGB27824.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Mycobacterium tuberculosis CDC1551A]
          Length = 518

 Score =  308 bits (790), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 172/462 (37%), Positives = 269/462 (58%), Gaps = 27/462 (5%)

Query: 23  VPQRFF-VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
            P R + V++YGCQMNV+DS R+  +  + GY R     +AD++V NTC +RE A  ++Y
Sbjct: 55  APARTYQVRTYGCQMNVHDSERLAGLLEAAGYRRATDGSEADVVVFNTCAVRENADNRLY 114

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             L  +      R +   D+ + V GC+AQ + + +LRR+P V+VV G      LP LLE
Sbjct: 115 GNLSHL----APRKRANPDMQIAVGGCLAQKDRDAVLRRAPWVDVVFGTHNIGSLPTLLE 170

Query: 142 RARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           RAR  K   V+   +++     L       +R+    A+++I  GC+  CTFC+VP  RG
Sbjct: 171 RARHNKVAQVEIAEALQQFPSSLP-----SSRESAYAAWVSISVGCNNSCTFCIVPSLRG 225

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW----RGKGLDGEKCTFSDLLYSLSE 256
            E+ RS + ++ E R L+++GV E+TLLGQNVNA+        L   +  F++LL +  +
Sbjct: 226 REVDRSPADILAEVRSLVNDGVLEVTLLGQNVNAYGVSFADPALPRNRGAFAELLRACGD 285

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           I GL R+R+T+ HP + +D +I+A      + P LH+P+QSGSDRIL++M R + A  Y 
Sbjct: 286 IDGLERVRFTSPHPAEFTDDVIEAMAQTRNVCPALHMPLQSGSDRILRAMRRSYRAERYL 345

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
            II+R+R+  P  AI++D IVGFPGET++DF AT+D+V +  +A AF+F+YS R GTP +
Sbjct: 346 GIIERVRAAIPHAAITTDLIVGFPGETEEDFAATLDVVRRARFAAAFTFQYSKRPGTPAA 405

Query: 377 NMLEQVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK----GKLV 429
            +  Q+ + V   + ERL+ LQ+++    +  N A VGQ +EVL+      K     ++ 
Sbjct: 406 QLDGQLPKAVVQERYERLIALQEQI---SLEANRALVGQAVEVLVATGEGRKDTVTARMS 462

Query: 430 GRSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELVV 469
           GR+   + V   +    +  GD+I  ++T+     L  +  V
Sbjct: 463 GRARDGRLVHFTAGQPRVRPGDVITTKVTEAAPHHLIADAGV 504


>gi|253798186|ref|YP_003031187.1| hypothetical protein TBMG_01242 [Mycobacterium tuberculosis KZN
           1435]
 gi|289553483|ref|ZP_06442693.1| conserved alanine and arginine rich protein [Mycobacterium
           tuberculosis KZN 605]
 gi|289746535|ref|ZP_06505913.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|298526202|ref|ZP_07013611.1| conserved hypothetical protein [Mycobacterium tuberculosis
           94_M4241A]
 gi|308378082|ref|ZP_07481451.2| conserved alanine and arginine rich protein [Mycobacterium
           tuberculosis SUMu009]
 gi|253319689|gb|ACT24292.1| conserved alanine and arginine rich protein [Mycobacterium
           tuberculosis KZN 1435]
 gi|289438115|gb|EFD20608.1| conserved alanine and arginine rich protein [Mycobacterium
           tuberculosis KZN 605]
 gi|289687063|gb|EFD54551.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|298495996|gb|EFI31290.1| conserved hypothetical protein [Mycobacterium tuberculosis
           94_M4241A]
 gi|308353677|gb|EFP42528.1| conserved alanine and arginine rich protein [Mycobacterium
           tuberculosis SUMu009]
 gi|328457959|gb|AEB03382.1| conserved alanine and arginine rich protein [Mycobacterium
           tuberculosis KZN 4207]
          Length = 545

 Score =  308 bits (789), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 172/462 (37%), Positives = 269/462 (58%), Gaps = 27/462 (5%)

Query: 23  VPQRFF-VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
            P R + V++YGCQMNV+DS R+  +  + GY R     +AD++V NTC +RE A  ++Y
Sbjct: 55  APARTYQVRTYGCQMNVHDSERLAGLLEAAGYRRATDGSEADVVVFNTCAVRENADNRLY 114

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             L  +      R +   D+ + V GC+AQ + + +LRR+P V+VV G      LP LLE
Sbjct: 115 GNLSHL----APRKRANPDMQIAVGGCLAQKDRDAVLRRAPWVDVVFGTHNIGSLPTLLE 170

Query: 142 RARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           RAR  K   V+   +++     L       +R+    A+++I  GC+  CTFC+VP  RG
Sbjct: 171 RARHNKVAQVEIAEALQQFPSSLP-----SSRESAYAAWVSISVGCNNSCTFCIVPSLRG 225

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW----RGKGLDGEKCTFSDLLYSLSE 256
            E+ RS + ++ E R L+++GV E+TLLGQNVNA+        L   +  F++LL +  +
Sbjct: 226 REVDRSPADILAEVRSLVNDGVLEVTLLGQNVNAYGVSFADPALPRNRGAFAELLRACGD 285

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           I GL R+R+T+ HP + +D +I+A      + P LH+P+QSGSDRIL++M R + A  Y 
Sbjct: 286 IDGLERVRFTSPHPAEFTDDVIEAMAQTRNVCPALHMPLQSGSDRILRAMRRSYRAERYL 345

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
            II+R+R+  P  AI++D IVGFPGET++DF AT+D+V +  +A AF+F+YS R GTP +
Sbjct: 346 GIIERVRAAIPHAAITTDLIVGFPGETEEDFAATLDVVRRARFAAAFTFQYSKRPGTPAA 405

Query: 377 NMLEQVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK----GKLV 429
            +  Q+ + V   + ERL+ LQ+++    +  N A VGQ +EVL+      K     ++ 
Sbjct: 406 QLDGQLPKAVVQERYERLIALQEQI---SLEANRALVGQAVEVLVATGEGRKDTVTARMS 462

Query: 430 GRSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELVV 469
           GR+   + V   +    +  GD+I  ++T+     L  +  V
Sbjct: 463 GRARDGRLVHFTAGQPRVRPGDVITTKVTEAAPHHLIADAGV 504


>gi|15609870|ref|NP_217249.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Mycobacterium
           tuberculosis H37Rv]
 gi|31793905|ref|NP_856398.1| hypothetical protein Mb2752c [Mycobacterium bovis AF2122/97]
 gi|121638608|ref|YP_978832.1| hypothetical protein BCG_2746c [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|148662574|ref|YP_001284097.1| hypothetical protein MRA_2759 [Mycobacterium tuberculosis H37Ra]
 gi|148823921|ref|YP_001288675.1| hypothetical protein TBFG_12746 [Mycobacterium tuberculosis F11]
 gi|167967441|ref|ZP_02549718.1| conserved alanine and arginine rich protein [Mycobacterium
           tuberculosis H37Ra]
 gi|215404696|ref|ZP_03416877.1| hypothetical protein Mtub0_13618 [Mycobacterium tuberculosis
           02_1987]
 gi|215412537|ref|ZP_03421271.1| hypothetical protein Mtub9_14345 [Mycobacterium tuberculosis
           94_M4241A]
 gi|215431668|ref|ZP_03429587.1| hypothetical protein MtubE_13568 [Mycobacterium tuberculosis
           EAS054]
 gi|218754467|ref|ZP_03533263.1| hypothetical protein MtubG1_14004 [Mycobacterium tuberculosis GM
           1503]
 gi|219558738|ref|ZP_03537814.1| hypothetical protein MtubT1_16097 [Mycobacterium tuberculosis T17]
 gi|224991100|ref|YP_002645789.1| hypothetical alanine, arginine-rich protein [Mycobacterium bovis
           BCG str. Tokyo 172]
 gi|254232832|ref|ZP_04926159.1| conserved hypothetical alanine, arginine-rich protein
           [Mycobacterium tuberculosis C]
 gi|254365387|ref|ZP_04981432.1| conserved hypothetical alanine, arginine-rich protein
           [Mycobacterium tuberculosis str. Haarlem]
 gi|260187748|ref|ZP_05765222.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Mycobacterium
           tuberculosis CPHL_A]
 gi|260201856|ref|ZP_05769347.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Mycobacterium
           tuberculosis T46]
 gi|289444275|ref|ZP_06434019.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Mycobacterium
           tuberculosis T46]
 gi|289448388|ref|ZP_06438132.1| conserved alanine and arginine rich protein [Mycobacterium
           tuberculosis CPHL_A]
 gi|289570909|ref|ZP_06451136.1| conserved alanine and arginine rich protein [Mycobacterium
           tuberculosis T17]
 gi|289754836|ref|ZP_06514214.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
 gi|289762904|ref|ZP_06522282.1| conserved hypothetical alanine, arginine-rich protein
           [Mycobacterium tuberculosis GM 1503]
 gi|294994178|ref|ZP_06799869.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Mycobacterium
           tuberculosis 210]
 gi|297635339|ref|ZP_06953119.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Mycobacterium
           tuberculosis KZN 4207]
 gi|297732335|ref|ZP_06961453.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Mycobacterium
           tuberculosis KZN R506]
 gi|306777010|ref|ZP_07415347.1| conserved alanine and arginine rich protein [Mycobacterium
           tuberculosis SUMu001]
 gi|306780913|ref|ZP_07419250.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Mycobacterium
           tuberculosis SUMu002]
 gi|306798636|ref|ZP_07436938.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Mycobacterium
           tuberculosis SUMu006]
 gi|306973125|ref|ZP_07485786.1| conserved alanine and arginine rich protein [Mycobacterium
           tuberculosis SUMu010]
 gi|313659668|ref|ZP_07816548.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Mycobacterium
           tuberculosis KZN V2475]
 gi|54040612|sp|P67086|MIAB_MYCBO RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|54042947|sp|P67085|MIAB_MYCTU RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|229890564|sp|A1KM71|MIAB_MYCBP RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|229890569|sp|A5U685|MIAB_MYCTA RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|2292967|emb|CAB10909.1| CONSERVED HYPOTHETICAL ALANINE, ARGININE-RICH PROTEIN
           [Mycobacterium tuberculosis H37Rv]
 gi|31619499|emb|CAD94937.1| CONSERVED HYPOTHETICAL ALANINE, ARGININE-RICH PROTEIN
           [Mycobacterium bovis AF2122/97]
 gi|121494256|emb|CAL72734.1| Conserved hypothetical alanine, arginine-rich protein
           [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|124601891|gb|EAY60901.1| conserved hypothetical alanine, arginine-rich protein
           [Mycobacterium tuberculosis C]
 gi|134150900|gb|EBA42945.1| conserved hypothetical alanine, arginine-rich protein
           [Mycobacterium tuberculosis str. Haarlem]
 gi|148506726|gb|ABQ74535.1| conserved hypothetical alanine and arginine rich protein
           [Mycobacterium tuberculosis H37Ra]
 gi|148722448|gb|ABR07073.1| conserved alanine and arginine rich protein [Mycobacterium
           tuberculosis F11]
 gi|224774215|dbj|BAH27021.1| hypothetical alanine, arginine-rich protein [Mycobacterium bovis
           BCG str. Tokyo 172]
 gi|289417194|gb|EFD14434.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Mycobacterium
           tuberculosis T46]
 gi|289421346|gb|EFD18547.1| conserved alanine and arginine rich protein [Mycobacterium
           tuberculosis CPHL_A]
 gi|289544663|gb|EFD48311.1| conserved alanine and arginine rich protein [Mycobacterium
           tuberculosis T17]
 gi|289695423|gb|EFD62852.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
 gi|289710410|gb|EFD74426.1| conserved hypothetical alanine, arginine-rich protein
           [Mycobacterium tuberculosis GM 1503]
 gi|308214667|gb|EFO74066.1| conserved alanine and arginine rich protein [Mycobacterium
           tuberculosis SUMu001]
 gi|308326311|gb|EFP15162.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Mycobacterium
           tuberculosis SUMu002]
 gi|308341151|gb|EFP30002.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Mycobacterium
           tuberculosis SUMu006]
 gi|308357524|gb|EFP46375.1| conserved alanine and arginine rich protein [Mycobacterium
           tuberculosis SUMu010]
 gi|326904348|gb|EGE51281.1| conserved alanine and arginine rich protein [Mycobacterium
           tuberculosis W-148]
          Length = 512

 Score =  308 bits (789), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 172/462 (37%), Positives = 269/462 (58%), Gaps = 27/462 (5%)

Query: 23  VPQRFF-VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
            P R + V++YGCQMNV+DS R+  +  + GY R     +AD++V NTC +RE A  ++Y
Sbjct: 22  APARTYQVRTYGCQMNVHDSERLAGLLEAAGYRRATDGSEADVVVFNTCAVRENADNRLY 81

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             L  +      R +   D+ + V GC+AQ + + +LRR+P V+VV G      LP LLE
Sbjct: 82  GNLSHL----APRKRANPDMQIAVGGCLAQKDRDAVLRRAPWVDVVFGTHNIGSLPTLLE 137

Query: 142 RARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           RAR  K   V+   +++     L       +R+    A+++I  GC+  CTFC+VP  RG
Sbjct: 138 RARHNKVAQVEIAEALQQFPSSLP-----SSRESAYAAWVSISVGCNNSCTFCIVPSLRG 192

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW----RGKGLDGEKCTFSDLLYSLSE 256
            E+ RS + ++ E R L+++GV E+TLLGQNVNA+        L   +  F++LL +  +
Sbjct: 193 REVDRSPADILAEVRSLVNDGVLEVTLLGQNVNAYGVSFADPALPRNRGAFAELLRACGD 252

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           I GL R+R+T+ HP + +D +I+A      + P LH+P+QSGSDRIL++M R + A  Y 
Sbjct: 253 IDGLERVRFTSPHPAEFTDDVIEAMAQTRNVCPALHMPLQSGSDRILRAMRRSYRAERYL 312

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
            II+R+R+  P  AI++D IVGFPGET++DF AT+D+V +  +A AF+F+YS R GTP +
Sbjct: 313 GIIERVRAAIPHAAITTDLIVGFPGETEEDFAATLDVVRRARFAAAFTFQYSKRPGTPAA 372

Query: 377 NMLEQVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK----GKLV 429
            +  Q+ + V   + ERL+ LQ+++    +  N A VGQ +EVL+      K     ++ 
Sbjct: 373 QLDGQLPKAVVQERYERLIALQEQI---SLEANRALVGQAVEVLVATGEGRKDTVTARMS 429

Query: 430 GRSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELVV 469
           GR+   + V   +    +  GD+I  ++T+     L  +  V
Sbjct: 430 GRARDGRLVHFTAGQPRVRPGDVITTKVTEAAPHHLIADAGV 471


>gi|317153127|ref|YP_004121175.1| RNA modification enzyme, MiaB family [Desulfovibrio aespoeensis
           Aspo-2]
 gi|316943378|gb|ADU62429.1| RNA modification enzyme, MiaB family [Desulfovibrio aespoeensis
           Aspo-2]
          Length = 452

 Score =  308 bits (789), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 185/462 (40%), Positives = 266/462 (57%), Gaps = 34/462 (7%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +F + ++GCQMNV+DS  +     S+G++     D+A + + NTC +R+K  +KVYS LG
Sbjct: 2   KFHITTFGCQMNVHDSQWLARALESRGWQEAGE-DEALVYIFNTCSVRDKPEQKVYSELG 60

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           RI     + +     +  VV GCVAQ  G     R P V +V G       P  LER   
Sbjct: 61  RI----AAHLGRDDRVFAVVGGCVAQQIGRGFFERFPFVRLVFGSDGIVGAPNALERLVA 116

Query: 146 G--KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           G  +RV   D+ +    ER +  +   NR R   AF+TI +GCD FC +C+VPYTRG + 
Sbjct: 117 GDDERVALLDF-MPVYEERETPGEQTANRTR--QAFVTIMQGCDNFCAYCIVPYTRGRQK 173

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD--GEKCTFSDLLYSLSEIKGLV 261
           SR    VVDE R L+ +GV EITLLGQNVN++   GLD  G   +F+ LL  ++ + GL 
Sbjct: 174 SRHPDAVVDECRALVASGVREITLLGQNVNSF---GLDKGGAGVSFAQLLRRVAGLDGLD 230

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           RLR+TTSHP+D++  +I A G+ D+L P LHLP+QSGSD +LK+M RR+T   Y + ++ 
Sbjct: 231 RLRFTTSHPKDIAPEVIAAFGEFDMLCPSLHLPLQSGSDAMLKAMRRRYTLDHYMRTVEA 290

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R  RP IA+++D IVGFPGET+ DF+AT+D+++ +GY  +FSFKYS R G    NM  +
Sbjct: 291 LRRARPGIALTTDLIVGFPGETEADFQATLDVMEAVGYDSSFSFKYSDRPGVAAVNMEPK 350

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACV----GQIIEVLIE---------KHGKEKGKL 428
           VD  V A+RL+    +L+  Q S    C+    G   +V +E                  
Sbjct: 351 VDPQVAADRLM----RLQTLQNSITRKCLKMLEGVETDVFVEGLSRIQDPGATSSTATSW 406

Query: 429 VGRSPW--LQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            GR P   + +V  + +   +G ++ VRIT  K  +L GE +
Sbjct: 407 KGRDPAGRIVNVPTDVREGLVGLLMPVRITQAKKHSLMGERI 448


>gi|255655942|ref|ZP_05401351.1| putative radical SAM protein [Clostridium difficile QCD-23m63]
 gi|296450635|ref|ZP_06892388.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Clostridium difficile
           NAP08]
 gi|296879247|ref|ZP_06903242.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Clostridium difficile
           NAP07]
 gi|296260479|gb|EFH07321.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Clostridium difficile
           NAP08]
 gi|296429790|gb|EFH15642.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Clostridium difficile
           NAP07]
          Length = 478

 Score =  308 bits (789), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 168/446 (37%), Positives = 275/446 (61%), Gaps = 16/446 (3%)

Query: 28  FVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRI 87
           F +++GCQMN +DS ++  M    GY+    ++++DLI+ NTC +RE A  KVY  LG++
Sbjct: 42  FTQTFGCQMNEHDSEKLCSMLEEMGYQMSMMVEESDLIIYNTCAVRENAELKVYGNLGQL 101

Query: 88  RNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           ++LK     +  ++ + V GC+ Q     EE+ ++   V+++ G    Y+ P+LL  +  
Sbjct: 102 KHLKG----KNPNMKIAVCGCMMQQPHVVEELRKKYKHVDLIFGTHNLYKFPQLLTESMN 157

Query: 146 GKRVVDTDYSVEDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
             +++   + V+ +     +++G   NRK  + AF+ I  GC+ FCT+C+VPYTRG E S
Sbjct: 158 SDKMLVDVWDVDGE-----VIEGLRSNRKFELKAFVNIMYGCNNFCTYCIVPYTRGRERS 212

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R+   +++E ++L+ NG  EITLLGQNV+++ GK L+    +FS+LL  +++I+G+ R+R
Sbjct: 213 RTPEDIINEIKELVANGTKEITLLGQNVDSY-GKTLEN-PVSFSELLRKVNDIEGIERIR 270

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           + TSHP+D+SD +I A  D D +  +LHLP+Q GS  +LK MNR +T   Y +II++ + 
Sbjct: 271 FMTSHPKDISDEVIYAIRDCDKVCEFLHLPIQCGSSSLLKKMNRHYTKEYYLEIIEKAKK 330

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             P+IA S+D ++GFPGET++D   T+D+V+K+ Y  AF+F YS R GTP + M  Q+ E
Sbjct: 331 EVPEIAFSTDLMIGFPGETEEDLLDTLDVVEKVRYDSAFTFIYSKRQGTPAAKMENQIPE 390

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVLNSK 443
           ++K ER   + + +       ND    +I+EVL+E   K  + KL GR+   + V     
Sbjct: 391 DIKHERFNRVLEAVNRISAEINDGYKNRIVEVLVEGRSKNNENKLSGRTRQNKLVNFEGG 450

Query: 444 NHN-IGDIIKVRITDVKISTLYGELV 468
           N + IG ++ V IT+ +  +L G LV
Sbjct: 451 NDDLIGKLVMVEITEPRTFSLNGILV 476


>gi|308371116|ref|ZP_07423861.2| conserved alanine and arginine rich protein [Mycobacterium
           tuberculosis SUMu003]
 gi|308329792|gb|EFP18643.1| conserved alanine and arginine rich protein [Mycobacterium
           tuberculosis SUMu003]
          Length = 500

 Score =  308 bits (789), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 171/456 (37%), Positives = 267/456 (58%), Gaps = 27/456 (5%)

Query: 23  VPQRFF-VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
            P R + V++YGCQMNV+DS R+  +  + GY R     +AD++V NTC +RE A  ++Y
Sbjct: 55  APARTYQVRTYGCQMNVHDSERLAGLLEAAGYRRATDGSEADVVVFNTCAVRENADNRLY 114

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             L  +      R +   D+ + V GC+AQ + + +LRR+P V+VV G      LP LLE
Sbjct: 115 GNLSHL----APRKRANPDMQIAVGGCLAQKDRDAVLRRAPWVDVVFGTHNIGSLPTLLE 170

Query: 142 RARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           RAR  K   V+   +++     L       +R+    A+++I  GC+  CTFC+VP  RG
Sbjct: 171 RARHNKVAQVEIAEALQQFPSSLP-----SSRESAYAAWVSISVGCNNSCTFCIVPSLRG 225

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW----RGKGLDGEKCTFSDLLYSLSE 256
            E+ RS + ++ E R L+++GV E+TLLGQNVNA+        L   +  F++LL +  +
Sbjct: 226 REVDRSPADILAEVRSLVNDGVLEVTLLGQNVNAYGVSFADPALPRNRGAFAELLRACGD 285

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           I GL R+R+T+ HP + +D +I+A      + P LH+P+QSGSDRIL++M R + A  Y 
Sbjct: 286 IDGLERVRFTSPHPAEFTDDVIEAMAQTRNVCPALHMPLQSGSDRILRAMRRSYRAERYL 345

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
            II+R+R+  P  AI++D IVGFPGET++DF AT+D+V +  +A AF+F+YS R GTP +
Sbjct: 346 GIIERVRAAIPHAAITTDLIVGFPGETEEDFAATLDVVRRARFAAAFTFQYSKRPGTPAA 405

Query: 377 NMLEQVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK----GKLV 429
            +  Q+ + V   + ERL+ LQ+++    +  N A VGQ +EVL+      K     ++ 
Sbjct: 406 QLDGQLPKAVVQERYERLIALQEQI---SLEANRALVGQAVEVLVATGEGRKDTVTARMS 462

Query: 430 GRSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTL 463
           GR+   + V   +    +  GD+I  ++T+     L
Sbjct: 463 GRARDGRLVHFTAGQPRVRPGDVITTKVTEAAPHHL 498


>gi|307154937|ref|YP_003890321.1| RNA modification enzyme, MiaB family [Cyanothece sp. PCC 7822]
 gi|306985165|gb|ADN17046.1| RNA modification enzyme, MiaB family [Cyanothece sp. PCC 7822]
          Length = 446

 Score =  308 bits (789), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 178/454 (39%), Positives = 279/454 (61%), Gaps = 23/454 (5%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +R+ + ++GCQMN  DS RM  +    GY+     ++ADL++ NTC IR+ A +KVYS+L
Sbjct: 6   RRYHITTFGCQMNKADSERMAGILEDLGYQWSEDPNEADLVLYNTCTIRDNAEQKVYSYL 65

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR    +  R  E  DL ++VAGCVAQ EGE++LRR P +++V+GPQ    L +LL++  
Sbjct: 66  GR----QAKRKHEKPDLTLIVAGCVAQQEGEKLLRRVPELDLVMGPQYANLLQDLLKQVE 121

Query: 145 FGKRVVDTD--YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            G ++V T+  + VED  +          R+  V+A++ +  GC++ C++CVVP  RG+E
Sbjct: 122 DGHQIVATEPIHIVEDITKP--------RRESRVSAWVNVIYGCNERCSYCVVPNVRGVE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT------FSDLLYSLSE 256
            SR+   +  E  +L   G  EITLLGQN++A+ G+ L G   T       +DLLY +++
Sbjct: 174 QSRTPQAIRAEMEELGRQGYKEITLLGQNIDAY-GRDLPGVTATGRHLHTLTDLLYYVND 232

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           + G+ R+R+ TSHPR  ++ LI A  +L  +  + H+P QSG ++ILK+M R +T  +YR
Sbjct: 233 VPGIERIRFATSHPRYFTERLIVACKELPKVCEHFHIPFQSGDNQILKAMKRGYTQEKYR 292

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
           QII++IRS+ PD +IS+D IVGFPGET++ F  T+ LVD IG+ Q  +  YSPR GTP +
Sbjct: 293 QIIEKIRSLMPDASISADAIVGFPGETEEQFENTLKLVDDIGFDQLNTAAYSPRPGTPAA 352

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWL 435
               Q+ E VK++RL  L   +  +    +   +G+  EVL+E+ + K   +++GR+   
Sbjct: 353 LWDNQLSEEVKSDRLQRLNHLVGIKAAERSQRYLGRTEEVLVEEVNPKNPTQVMGRTRGN 412

Query: 436 QSVVLNSK-NHNIGDIIKVRITDVKISTLYGELV 468
           +        N   G I+ V+IT+V+  +L G++V
Sbjct: 413 RLTFFEGDINQLKGQIVSVKITEVRPFSLSGKIV 446


>gi|297588418|ref|ZP_06947061.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Finegoldia magna ATCC
           53516]
 gi|297573791|gb|EFH92512.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Finegoldia magna ATCC
           53516]
          Length = 461

 Score =  308 bits (789), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 175/446 (39%), Positives = 272/446 (60%), Gaps = 16/446 (3%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           + + ++GCQMN +DS +++ +  + G+E+ +   DAD I+ NTC +RE A  KVY  LG 
Sbjct: 27  YSIITHGCQMNEHDSEKIKTLLENMGFEQSDEKLDADFIIFNTCLVRENAEMKVYGQLGA 86

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQA-EGEEILR-RSPIVNVVVGPQTYYRLPELLERA- 143
           ++NLK    +E  D+L+ V GC+ Q     +I+R + P V++V G      LP L++R  
Sbjct: 87  LKNLK----RENPDMLIAVCGCMMQTGPARDIIREKYPQVDIVFGVNNINSLPYLIDRHL 142

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             GK VVD +   +D  E ++I      R      ++ I  GC+ FCT+C+VPY RG E 
Sbjct: 143 SSGKLVVDIERK-DDIDEDIAI-----KRDNEYVGYVNIMTGCNNFCTYCIVPYARGREQ 196

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SRS+  ++ E ++++D G  +ITLLGQNVN++ GK L+ +  TF++LL  +++++GL RL
Sbjct: 197 SRSVESILSEVKRMVDQGYKDITLLGQNVNSY-GKTLE-KPVTFTELLTKVNDVEGLERL 254

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+ TSHP+D+SD LI+A G LD +   +HLP Q+GS+ +L+ M+RR+T   Y + +++++
Sbjct: 255 RFLTSHPKDISDELIEAMGKLDKVCENIHLPFQAGSNSVLERMHRRYTKESYLEKVEKLK 314

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
                I  S+D IVGFPGET++DF+ T+D+V K+GY QAF+FKY+ R GT      +QVD
Sbjct: 315 KSVKGITFSTDIIVGFPGETEEDFQDTLDVVRKVGYEQAFTFKYNRRPGTKADLFEDQVD 374

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVLNS 442
           E+VK +RL  L           N + +G I EVLIE   K   + + GR+   + V +  
Sbjct: 375 EDVKQDRLERLLDVAYPIFYEKNKSYLGTIQEVLIEGESKNNPEVMTGRTRTFKLVNVKC 434

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
               IG ++  +I D     L GE+V
Sbjct: 435 DKSYIGKLVNTKIVDFNSFALTGEMV 460


>gi|308372381|ref|ZP_07428457.2| tRNA-I(6)A37 thiotransferase enzyme MiaB [Mycobacterium
           tuberculosis SUMu004]
 gi|308333412|gb|EFP22263.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Mycobacterium
           tuberculosis SUMu004]
          Length = 498

 Score =  308 bits (789), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 171/456 (37%), Positives = 267/456 (58%), Gaps = 27/456 (5%)

Query: 23  VPQRFF-VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
            P R + V++YGCQMNV+DS R+  +  + GY R     +AD++V NTC +RE A  ++Y
Sbjct: 55  APARTYQVRTYGCQMNVHDSERLAGLLEAAGYRRATDGSEADVVVFNTCAVRENADNRLY 114

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             L  +      R +   D+ + V GC+AQ + + +LRR+P V+VV G      LP LLE
Sbjct: 115 GNLSHL----APRKRANPDMQIAVGGCLAQKDRDAVLRRAPWVDVVFGTHNIGSLPTLLE 170

Query: 142 RARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           RAR  K   V+   +++     L       +R+    A+++I  GC+  CTFC+VP  RG
Sbjct: 171 RARHNKVAQVEIAEALQQFPSSLP-----SSRESAYAAWVSISVGCNNSCTFCIVPSLRG 225

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW----RGKGLDGEKCTFSDLLYSLSE 256
            E+ RS + ++ E R L+++GV E+TLLGQNVNA+        L   +  F++LL +  +
Sbjct: 226 REVDRSPADILAEVRSLVNDGVLEVTLLGQNVNAYGVSFADPALPRNRGAFAELLRACGD 285

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           I GL R+R+T+ HP + +D +I+A      + P LH+P+QSGSDRIL++M R + A  Y 
Sbjct: 286 IDGLERVRFTSPHPAEFTDDVIEAMAQTRNVCPALHMPLQSGSDRILRAMRRSYRAERYL 345

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
            II+R+R+  P  AI++D IVGFPGET++DF AT+D+V +  +A AF+F+YS R GTP +
Sbjct: 346 GIIERVRAAIPHAAITTDLIVGFPGETEEDFAATLDVVRRARFAAAFTFQYSKRPGTPAA 405

Query: 377 NMLEQVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK----GKLV 429
            +  Q+ + V   + ERL+ LQ+++    +  N A VGQ +EVL+      K     ++ 
Sbjct: 406 QLDGQLPKAVVQERYERLIALQEQI---SLEANRALVGQAVEVLVATGEGRKDTVTARMS 462

Query: 430 GRSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTL 463
           GR+   + V   +    +  GD+I  ++T+     L
Sbjct: 463 GRARDGRLVHFTAGQPRVRPGDVITTKVTEAAPHHL 498


>gi|308380459|ref|ZP_07490004.2| tRNA-I(6)A37 thiotransferase enzyme MiaB [Mycobacterium
           tuberculosis SUMu011]
 gi|308361421|gb|EFP50272.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Mycobacterium
           tuberculosis SUMu011]
          Length = 500

 Score =  308 bits (789), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 172/462 (37%), Positives = 269/462 (58%), Gaps = 27/462 (5%)

Query: 23  VPQRFF-VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
            P R + V++YGCQMNV+DS R+  +  + GY R     +AD++V NTC +RE A  ++Y
Sbjct: 22  APARTYQVRTYGCQMNVHDSERLAGLLEAAGYRRATDGSEADVVVFNTCAVRENADNRLY 81

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             L  +      R +   D+ + V GC+AQ + + +LRR+P V+VV G      LP LLE
Sbjct: 82  GNLSHL----APRKRANPDMQIAVGGCLAQKDRDAVLRRAPWVDVVFGTHNIGSLPTLLE 137

Query: 142 RARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           RAR  K   V+   +++     L       +R+    A+++I  GC+  CTFC+VP  RG
Sbjct: 138 RARHNKVAQVEIAEALQQFPSSLP-----SSRESAYAAWVSISVGCNNSCTFCIVPSLRG 192

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW----RGKGLDGEKCTFSDLLYSLSE 256
            E+ RS + ++ E R L+++GV E+TLLGQNVNA+        L   +  F++LL +  +
Sbjct: 193 REVDRSPADILAEVRSLVNDGVLEVTLLGQNVNAYGVSFADPALPRNRGAFAELLRACGD 252

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           I GL R+R+T+ HP + +D +I+A      + P LH+P+QSGSDRIL++M R + A  Y 
Sbjct: 253 IDGLERVRFTSPHPAEFTDDVIEAMAQTRNVCPALHMPLQSGSDRILRAMRRSYRAERYL 312

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
            II+R+R+  P  AI++D IVGFPGET++DF AT+D+V +  +A AF+F+YS R GTP +
Sbjct: 313 GIIERVRAAIPHAAITTDLIVGFPGETEEDFAATLDVVRRARFAAAFTFQYSKRPGTPAA 372

Query: 377 NMLEQVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK----GKLV 429
            +  Q+ + V   + ERL+ LQ+++    +  N A VGQ +EVL+      K     ++ 
Sbjct: 373 QLDGQLPKAVVQERYERLIALQEQI---SLEANRALVGQAVEVLVATGEGRKDTVTARMS 429

Query: 430 GRSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELVV 469
           GR+   + V   +    +  GD+I  ++T+     L  +  V
Sbjct: 430 GRARDGRLVHFTAGQPRVRPGDVITTKVTEAAPHHLIADAGV 471


>gi|167754516|ref|ZP_02426643.1| hypothetical protein CLORAM_00017 [Clostridium ramosum DSM 1402]
 gi|167705348|gb|EDS19927.1| hypothetical protein CLORAM_00017 [Clostridium ramosum DSM 1402]
          Length = 481

 Score =  308 bits (789), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 171/447 (38%), Positives = 263/447 (58%), Gaps = 14/447 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +++++++YGCQ N  DS  +  +  S  Y+    + +AD+IVLNTC IRE A EKV+  +
Sbjct: 44  KKYYIQTYGCQANERDSETLSGILESMSYQPTTEIKEADVIVLNTCAIRENAEEKVFGKV 103

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G ++NLK    K   +L+  + GC+AQ E     IL + P V+++ G    +RLPELL+ 
Sbjct: 104 GYVKNLK----KTNPNLIFAMCGCMAQEEVVVNRILEKHPHVDLIFGTHNIHRLPELLKD 159

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           A + K ++   +S E       I +    R     A++ I  GC+KFCT+C+VPYTRG E
Sbjct: 160 ALYSKEMIVEVWSKEGDV----IENAPVRRDNKYKAWVNIMYGCNKFCTYCIVPYTRGKE 215

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR    ++ E  +L+  G  EITLLGQNVN++ GK L GE   FS+LL  +++   + R
Sbjct: 216 RSRLAKDIIKEVEELVAEGYQEITLLGQNVNSY-GKDL-GEDYNFSNLLEDVAKT-NIPR 272

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP D S+ +IK     D +MP +HLPVQSG++ +LK M RR++  +Y ++  +I
Sbjct: 273 IRFTTSHPWDFSEDMIKIIAKYDNIMPAIHLPVQSGNNEVLKLMGRRYSREQYLELFHKI 332

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           +   PD  +++D IVGFP ET + +  T+ L  +  Y  A++F YSPR GTP + M++ V
Sbjct: 333 KEYIPDCTVTTDIIVGFPNETHEQYLDTLSLYQECEYDLAYTFVYSPRAGTPAAKMVDNV 392

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSPWLQSVVLN 441
             + K +RL  L + + E+    N   + +I+EVL+E    K+   L G +   + V   
Sbjct: 393 ASDEKDQRLYKLNEIVNEKAYKQNQRFLNKIVEVLVEGTSKKDDSMLTGYTRHQKLVNFK 452

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
               +IG IIKV+IT+ K   L GE +
Sbjct: 453 GDPKDIGKIIKVKITEAKTWALKGESI 479


>gi|298206730|ref|YP_003714909.1| putative SAM/TRAM family methylase protein [Croceibacter atlanticus
           HTCC2559]
 gi|83849361|gb|EAP87229.1| putative SAM/TRAM family methylase protein [Croceibacter atlanticus
           HTCC2559]
          Length = 482

 Score =  308 bits (788), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 178/462 (38%), Positives = 268/462 (58%), Gaps = 27/462 (5%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F++SYGC MN  DS  +  +   +G+    +++DADL+++NTC IR+KA + V   L
Sbjct: 24  RKLFIESYGCAMNFSDSEIVASIMAKEGFNTTPNLEDADLVLVNTCSIRDKAEQTVRKRL 83

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            +   +K        ++ V V GC+A+    + L    IV++VVGP  Y  LP L++   
Sbjct: 84  EKYNAVKRDH---NPNMKVGVLGCMAERLKSKFLEEEKIVDLVVGPDAYKDLPNLIKEVE 140

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G+  V+   S ++ +  +S V    N   GV+AF++I  GCD  CTFCVVP+TRG E S
Sbjct: 141 EGRDAVNVILSKDETYGDVSPVRLQTN---GVSAFVSITRGCDNMCTFCVVPFTRGRERS 197

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNA--WRGKGL--DGEKCT---------FSDLL 251
           R    ++DE R L +NG  EITLLGQNV++  W G G+  D  K T         F  LL
Sbjct: 198 RDPQSILDEVRNLSENGYKEITLLGQNVDSYLWYGGGMKKDFSKATPMQQATATGFPQLL 257

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
             ++E    +R+R++TS+P+DM++ +IK       +  ++HLPVQSGSDRILK MNR HT
Sbjct: 258 KMVAETFPNMRIRFSTSNPQDMTEDVIKTMAAYSNICKHIHLPVQSGSDRILKEMNRLHT 317

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
             EY  +ID IR+  PD +IS D I+GFP ET+ D + T+ L++K+ Y   + +KYS R 
Sbjct: 318 REEYFSLIDTIRAYMPDCSISQDMIIGFPTETEQDHKDTLSLMEKVQYNFGYMYKYSERP 377

Query: 372 GT-PGSNMLEQVDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK 427
           GT  G  M + V E VK  RL   + LQ++L + Q   N   +G+ +EVL+E+  K+  K
Sbjct: 378 GTMAGRKMEDDVPEEVKKRRLSEVVALQRQLSQLQTEKN---IGKTVEVLVERESKKSDK 434

Query: 428 -LVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
              GR+      V   +++ +GD++ V+I D   +TL G  +
Sbjct: 435 EWSGRTSQNAVAVFPKEHYKVGDLVNVKIHDCTSATLIGNAI 476


>gi|289424090|ref|ZP_06425876.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Peptostreptococcus
           anaerobius 653-L]
 gi|289155515|gb|EFD04194.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Peptostreptococcus
           anaerobius 653-L]
          Length = 482

 Score =  308 bits (788), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 171/450 (38%), Positives = 270/450 (60%), Gaps = 16/450 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + F ++++GCQMN +DS  +  M  S GY R  S D AD+++ NTC +RE A  KVY  L
Sbjct: 39  KSFIIQTFGCQMNEHDSEMLISMLESIGYSRALSEDTADIVIYNTCAVRENAELKVYGNL 98

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G ++++K  R     D+ +VV GC+ Q E   EEI  +   V++V G    Y+ PELL  
Sbjct: 99  GHLKSIKRKR----PDMKIVVCGCMMQQEHIVEEIKAKHQHVDLVFGTHNLYKFPELLAS 154

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
                +++   + ++ +     +V+G   NRK  + AF+ I  GC+ FCT+C+VPYTRG 
Sbjct: 155 TFESDKILVDVWDIDGE-----VVEGLKSNRKFDIKAFVNIMYGCNNFCTYCIVPYTRGR 209

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE-KCTFSDLLYSLSEIKGL 260
           E SR    ++ E   L+  GV E+TLLGQNVN++ GK L+ E + +F+DLL  ++EI+GL
Sbjct: 210 ERSRKPKDIISEIEDLVKGGVREVTLLGQNVNSY-GKTLEEEDRISFADLLRRVNEIEGL 268

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+ +SHP+D+SD +I A  D   +  +LHLP Q GS  +LK MNR ++  +Y  II 
Sbjct: 269 ERIRFMSSHPKDISDDVIYAMRDCKKVCEFLHLPFQVGSTSLLKKMNRHYSKEDYLNIIK 328

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           + +   PD+A S+D ++GFPGETD+D + T+D+ +++ +  AF+F YS R GTP + M +
Sbjct: 329 KAKEEIPDLAFSTDIMIGFPGETDEDVQDTIDICEEVRFDTAFTFIYSKRQGTPAAKMED 388

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVV 439
           Q+ E +K +R   +   +       N    G+I+EVL+E   K+    + G+S   ++V 
Sbjct: 389 QIPEEIKHKRFDKVLSVINRISGEKNHLYDGKIVEVLVEGASKKDSSIMTGKSRQNKTVN 448

Query: 440 LNSKNHN-IGDIIKVRITDVKISTLYGELV 468
               + + +G ++ V+ITD K  +L G+L 
Sbjct: 449 FTGGDESLVGRLVNVKITDPKSFSLNGQLA 478


>gi|300855303|ref|YP_003780287.1| putative MiaB protein [Clostridium ljungdahlii DSM 13528]
 gi|300435418|gb|ADK15185.1| putative MiaB protein [Clostridium ljungdahlii DSM 13528]
          Length = 447

 Score =  308 bits (788), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 174/448 (38%), Positives = 263/448 (58%), Gaps = 15/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + FF++++GCQMN  DS ++  M    GY+R      ADLI+ NTC +RE A  KVY  L
Sbjct: 10  KNFFIETWGCQMNEEDSEKLSGMLKRLGYKRTEDRSSADLIIFNTCCVRENAELKVYGNL 69

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAE--GEEILRRSPIVNVVVGPQTYYRLPELLER 142
           G ++ LK   IK   +L++ + GC+ Q +   + I++R P V+++ G    Y+ PE L R
Sbjct: 70  GMLKKLK---IK-NPNLIIAICGCMMQQKDMAKNIIKRFPFVDIIFGTHNAYKFPEYLNR 125

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
            +     V     ++DK     IV+G   +R+  V AF+TI  GC+ FCT+C+VPY RG 
Sbjct: 126 VQQENTSV---IEIQDK--ESGIVEGLPIDRESNVKAFVTITYGCNNFCTYCIVPYVRGR 180

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR    +  E ++LI  G  EITLLGQNVN++ GK L+  K +FSDLL  ++ I G+ 
Sbjct: 181 ERSRKPEDIEKEIKELISKGYKEITLLGQNVNSY-GKTLE-PKVSFSDLLRRINSIDGVE 238

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+ TS P+D+++ ++ A  +   +   +HLPVQSGS  +LK MNR ++   Y  ++  
Sbjct: 239 RIRFMTSQPKDLTEDVVDAVAECSKVCEQIHLPVQSGSTSLLKKMNRSYSKEGYLNLVKM 298

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           IR   PD AI++D IVGFPGET++DF  T++L  ++ Y  AF+F YS R GTP  +  +Q
Sbjct: 299 IREKVPDAAITTDIIVGFPGETEEDFEETLNLAREVQYDSAFTFIYSKRKGTPAYDFEDQ 358

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVL 440
           + E++K ER   L + + E     N    G+  E+L+E   K +  KL GR+   + V  
Sbjct: 359 IPEDIKHERFNRLVEVINESSARKNKDYEGRTEEILVEGTSKNDNTKLTGRTRSGKLVNF 418

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                +IG ++KV+IT     +L GE +
Sbjct: 419 KGNKKDIGKLVKVQITKATSFSLLGEEI 446


>gi|95930428|ref|ZP_01313164.1| tRNA-i(6)A37 modification enzyme MiaB [Desulfuromonas acetoxidans
           DSM 684]
 gi|95133468|gb|EAT15131.1| tRNA-i(6)A37 modification enzyme MiaB [Desulfuromonas acetoxidans
           DSM 684]
          Length = 444

 Score =  308 bits (788), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 170/440 (38%), Positives = 267/440 (60%), Gaps = 25/440 (5%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           F+++++GCQMNV DS  + ++     Y  V +   ADLI+LNTC +R+KA  KVY  L  
Sbjct: 5   FYLETFGCQMNVVDSEWIVNLLGQIDYHPVETPQQADLILLNTCSVRDKAERKVYGHLSH 64

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL---ERA 143
            + LK+ R     DL++ V GCVAQ EG+++L++ P +++V G    ++LPEL+   E+ 
Sbjct: 65  FKPLKDQR----PDLILAVGGCVAQQEGQQLLKKVPYLDIVFGTHNVHKLPELIFAVEQG 120

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           R G++   T Y    + ++          +  +  F+T+ +GCD FC++CVVPY RG E+
Sbjct: 121 R-GRQCETTHYEGAKRLDQFP----QRADENAICRFVTVMQGCDNFCSYCVVPYVRGREV 175

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR+   ++DE R L+D GV E+TLLGQNVN++  KG      +F +LL  + +I GL RL
Sbjct: 176 SRASGDILDEVRSLVDQGVREVTLLGQNVNSYGQKG--SGDMSFPELLQRVHDIDGLQRL 233

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+T+SHP+D+SD LI     LD L  ++HL +QSGS+R+L+ MNR ++  +Y + + R++
Sbjct: 234 RFTSSHPKDLSDDLIACFTSLDKLCKHMHLALQSGSNRVLELMNRGYSREQYLERVTRLK 293

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              P+I +++D IVGFPGE   DF  T+D+++++ +A AFSF YS R  T    M + V 
Sbjct: 294 QACPEIRMTTDLIVGFPGEQQADFEQTLDMLEQVRFADAFSFLYSRRPQTKALEMEDPVP 353

Query: 384 ENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIE---KHGKEKGKLVGRSPWLQS 437
            + K    ER+L LQ+ +  +   +   C G +  VL+E   +HG  +G++ GR+ W + 
Sbjct: 354 ADEKQRWFERMLKLQETISAE--IWQQDC-GTVQPVLVEGVSRHG--QGQVFGRNQWNRI 408

Query: 438 VVLNSKNHNIGDIIKVRITD 457
           V  +     IG  + VRI D
Sbjct: 409 VNFDGPESLIGQQVAVRIED 428


>gi|256390815|ref|YP_003112379.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Catenulispora
           acidiphila DSM 44928]
 gi|256357041|gb|ACU70538.1| RNA modification enzyme, MiaB family [Catenulispora acidiphila DSM
           44928]
          Length = 509

 Score =  308 bits (788), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 171/446 (38%), Positives = 268/446 (60%), Gaps = 31/446 (6%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERV-NSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + V++YGCQMNV+DS R+  +    GY R  +   +AD++VLNTC +RE A  ++Y  LG
Sbjct: 10  YIVRTYGCQMNVHDSERLSGLLEGAGYVRAADGAGEADVVVLNTCAVRENADNRLYGNLG 69

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            + ++K  R      + + V GC+AQ +  EI RR+P V+VV G      LP LLERAR 
Sbjct: 70  HLASVKAGRP----GMRIAVGGCLAQKDRGEITRRAPWVDVVFGTHNIGSLPVLLERARV 125

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKR--GVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
                  D +  +  E L +       +R     A++++  GC+  CTFC+VP  RG E 
Sbjct: 126 ------RDEAQVEILESLDVFPSTLPTRRESAYAAWVSVSVGCNNTCTFCIVPALRGKEK 179

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
            R   +++ E   L+  GVCE+TLLGQNVNA+  +   G++  F+ LL +  +I+GL R+
Sbjct: 180 DRRPGEILSEIEALVAEGVCEVTLLGQNVNAYGSEF--GDREAFAKLLRACGQIEGLERV 237

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+T+ HPRD +D +I A  +   +MP LH+P+QSGSD +L++M R +    Y  II+R+R
Sbjct: 238 RFTSPHPRDFTDDVIAAMAETPNVMPQLHMPLQSGSDTVLRAMRRSYRQDRYLGIIERVR 297

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           +  PD AI++D IVGFPGET++DF  TM +V +  ++ AF+F+YS R GTP + M EQV 
Sbjct: 298 AAMPDAAITTDIIVGFPGETEEDFEQTMHVVRQARFSAAFTFQYSKRPGTPAATMEEQVP 357

Query: 384 ENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKG---KLVGRSP--- 433
           + V   + ERL+ LQ+++  ++   N   VG+ +E+L+ E  G++ G   ++ GR+P   
Sbjct: 358 KAVVQARYERLVALQEEISWEE---NKKQVGRTVELLVAEGEGRKDGETRRMSGRAPDNR 414

Query: 434 WLQSVVLNSKNHNI---GDIIKVRIT 456
            +   V ++   ++   GD++ V +T
Sbjct: 415 LVHFAVGDTAAADLPRPGDMVSVEVT 440


>gi|46579397|ref|YP_010205.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|81404892|sp|Q72DE5|MIAB_DESVH RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|46448811|gb|AAS95464.1| tRNA-i(6)A37 modification enzyme MiaB [Desulfovibrio vulgaris str.
           Hildenborough]
          Length = 449

 Score =  308 bits (788), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 179/452 (39%), Positives = 261/452 (57%), Gaps = 26/452 (5%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           F ++++GCQMNV DS  +      +G+       +A L ++NTC +R+K  +KVYS LGR
Sbjct: 6   FHIETFGCQMNVNDSDWLARALMERGFSPA-PFGEARLTIVNTCSVRDKPEQKVYSLLGR 64

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER--AR 144
           IR   + +     D  V V GCVAQ  G     R P V +V G       P+ L+R    
Sbjct: 65  IRQATSKKP----DAFVAVGGCVAQQIGSGFFSRFPQVRLVFGTDGLAMAPQALDRLVEE 120

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
              ++   D+S ED  ER +++  G       + F+ I +GCD FC +C+VPYTRG + S
Sbjct: 121 PDLKLSLLDFS-EDYPERDAVLGQG---AVPASVFVNIMQGCDNFCAYCIVPYTRGRQKS 176

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R+   ++DE R L+D G  EITLLGQNVN++ G+   G+  TF+ LL+ ++ + GL RLR
Sbjct: 177 RATGTILDECRALLDRGAREITLLGQNVNSF-GQDSHGDGTTFAQLLHKVAALPGLERLR 235

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           + T HP+D++  +++A G L  L P LHLP+Q+GSDRILK M RR+    Y +I+D +R+
Sbjct: 236 FVTPHPKDIAPEVVEAFGTLPNLCPRLHLPLQAGSDRILKLMGRRYDMARYLRIVDDLRA 295

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
            RPDI +SSD IVGFPGET++DF  TMD ++ +GYA ++SF YS R GT    + +++  
Sbjct: 296 ARPDIVLSSDIIVGFPGETEEDFMETMDALETVGYAASYSFCYSDRPGTRAEMLPDKLSR 355

Query: 385 NVKAERLLCLQKKLREQQVSFNDAC----VGQIIEVLIE----KHGKEKGKLVGRSPW-- 434
            VK ERL    ++L+  Q    + C    VG+ +EVL+E    K G E     GR P+  
Sbjct: 356 EVKLERL----ERLQTLQNRLTERCLQDMVGRKVEVLLEGMSRKPGDEGDSWQGRDPYGN 411

Query: 435 LQSVVLNSKNHNIGDIIKVRITDVKISTLYGE 466
           L +V L   +   G  + V +   K  +L  E
Sbjct: 412 LVNVALPQGSDVRGRFLPVVVAQAKKHSLLAE 443


>gi|256545241|ref|ZP_05472606.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Anaerococcus vaginalis
           ATCC 51170]
 gi|256399068|gb|EEU12680.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Anaerococcus vaginalis
           ATCC 51170]
          Length = 452

 Score =  308 bits (788), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 172/452 (38%), Positives = 271/452 (59%), Gaps = 19/452 (4%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
            V +++ + ++GCQMN +DS R+  +    GY + +  +DAD I+ NTC +RE A  K+Y
Sbjct: 13  FVNKKYNITTFGCQMNEHDSERISYILEDLGYTKTDDRNDADFILFNTCLVRENAELKLY 72

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAE--GEEILRRSPIVNVVVGPQTYYRLPEL 139
             +  ++ LK    +E  + ++ V+GC+ Q     E I ++   V+++ G +    LP+L
Sbjct: 73  GQVSSLKKLK----EENPEKIIAVSGCMMQTSVAREVIEKKHKEVDIIFGTKNINSLPDL 128

Query: 140 L-ERARFGKRVVD-TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197
           L +    G+RV+D ++ +V+D +         YN K    A++ I  GCD FC++C+VP 
Sbjct: 129 LFKYLETGERVIDVSEDNVKDDY-------VNYNSKNNFQAYVNIMRGCDNFCSYCIVPQ 181

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257
           +RG E SR  S +++E   L+ NG  EITLLGQNVN++  K       TF +LL   ++I
Sbjct: 182 SRGREESRRPSHIIEEIENLVKNGYKEITLLGQNVNSYGNKS--DFNVTFPELLEKCAKI 239

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
           +GL RLR+TTSHP+D+SD LI+   + D +  Y HLP+QSGSD++LK MNR++   +Y +
Sbjct: 240 EGLQRLRFTTSHPKDLSDDLIRVIKENDNICNYFHLPMQSGSDKVLKDMNRKYNKEQYLE 299

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
              +++   P IAIS+D IVG+P ET++DF+ T+D+  K+G+  AF+FKYSPR  T  + 
Sbjct: 300 KARKLKEEIPGIAISTDIIVGYPTETEEDFQETLDVCRKVGFDTAFTFKYSPRPKTKAAK 359

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQ 436
            L+ +D+ +  +R   L   L       N   VG+++EVL+E   K  K  L GR+   +
Sbjct: 360 -LDPIDDKIVQDRFDRLLDTLYPIFNEKNKEYVGKVVEVLLESESKNNKNVLTGRTDTFK 418

Query: 437 SVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            V + +  + IG I+KV+ITD    T+ GELV
Sbjct: 419 LVHVKADKNLIGQIVKVKITDNTSFTISGELV 450


>gi|307085426|ref|ZP_07494539.1| conserved alanine and arginine rich protein [Mycobacterium
           tuberculosis SUMu012]
 gi|308365073|gb|EFP53924.1| conserved alanine and arginine rich protein [Mycobacterium
           tuberculosis SUMu012]
          Length = 563

 Score =  307 bits (787), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 172/462 (37%), Positives = 269/462 (58%), Gaps = 27/462 (5%)

Query: 23  VPQRFF-VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
            P R + V++YGCQMNV+DS R+  +  + GY R     +AD++V NTC +RE A  ++Y
Sbjct: 73  APARTYQVRTYGCQMNVHDSERLAGLLEAAGYRRATDGSEADVVVFNTCAVRENADNRLY 132

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             L  +      R +   D+ + V GC+AQ + + +LRR+P V+VV G      LP LLE
Sbjct: 133 GNLSHL----APRKRANPDMQIAVGGCLAQKDRDAVLRRAPWVDVVFGTHNIGSLPTLLE 188

Query: 142 RARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           RAR  K   V+   +++     L       +R+    A+++I  GC+  CTFC+VP  RG
Sbjct: 189 RARHNKVAQVEIAEALQQFPSSLP-----SSRESAYAAWVSISVGCNNSCTFCIVPSLRG 243

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW----RGKGLDGEKCTFSDLLYSLSE 256
            E+ RS + ++ E R L+++GV E+TLLGQNVNA+        L   +  F++LL +  +
Sbjct: 244 REVDRSPADILAEVRSLVNDGVLEVTLLGQNVNAYGVSFADPALPRNRGAFAELLRACGD 303

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           I GL R+R+T+ HP + +D +I+A      + P LH+P+QSGSDRIL++M R + A  Y 
Sbjct: 304 IDGLERVRFTSPHPAEFTDDVIEAMAQTRNVCPALHMPLQSGSDRILRAMRRSYRAERYL 363

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
            II+R+R+  P  AI++D IVGFPGET++DF AT+D+V +  +A AF+F+YS R GTP +
Sbjct: 364 GIIERVRAAIPHAAITTDLIVGFPGETEEDFAATLDVVRRARFAAAFTFQYSKRPGTPAA 423

Query: 377 NMLEQVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK----GKLV 429
            +  Q+ + V   + ERL+ LQ+++    +  N A VGQ +EVL+      K     ++ 
Sbjct: 424 QLDGQLPKAVVQERYERLIALQEQI---SLEANRALVGQAVEVLVATGEGRKDTVTARMS 480

Query: 430 GRSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELVV 469
           GR+   + V   +    +  GD+I  ++T+     L  +  V
Sbjct: 481 GRARDGRLVHFTAGQPRVRPGDVITTKVTEAAPHHLIADAGV 522


>gi|118580144|ref|YP_901394.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Pelobacter
           propionicus DSM 2379]
 gi|229890588|sp|A1APR6|MIAB_PELPD RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|118502854|gb|ABK99336.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Pelobacter propionicus
           DSM 2379]
          Length = 440

 Score =  307 bits (787), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 170/443 (38%), Positives = 261/443 (58%), Gaps = 13/443 (2%)

Query: 28  FVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRI 87
           +++++GCQMNV DS R+  M    GY        A LI+LNTC +R  A EKVY  L  +
Sbjct: 7   YIETFGCQMNVNDSERILTMLADIGYVPTQEPARARLILLNTCSVRAGAEEKVYRRLENL 66

Query: 88  RNLK--NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
             LK  NSR      L++ V GCVAQ EGE +L R P +++V G    + L +++  A  
Sbjct: 67  VVLKRHNSR------LIIGVGGCVAQQEGEALLERIPKLDLVFGTHNLHLLNDMVLAAER 120

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G+R  +T +   D  +RL +        R +++F+T+ +GC+ +C++C+VPY RG E+SR
Sbjct: 121 GERKSETSFI--DNDQRLDLFPPIRGTAR-ISSFVTVMQGCENYCSYCIVPYVRGPEVSR 177

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
               ++ E R+L D GV E+ LLGQNVN++  K     + +F++L+  ++ + G+ R+R+
Sbjct: 178 RSGDILREVRQLADQGVREVALLGQNVNSYGLK--SSAEPSFAELIRLVAAVDGIRRIRF 235

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
            TSHP+DMS  LI   GDL  L   LHLP QSGSD +L  M R +T  EY + +  +R+V
Sbjct: 236 FTSHPKDMSPELIACFGDLPALCSQLHLPAQSGSDNVLARMGRGYTREEYLEKVRALRAV 295

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
           RPDI  + D IVGFPGET+++F+ T+ L++++ Y   FSF YSPR GT  + + + +   
Sbjct: 296 RPDIVFTGDMIVGFPGETEEEFQETLSLMEEVRYIDLFSFAYSPRPGTRAAELADDLSRG 355

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445
            K  RL  LQ   +   +  ND  +G    VL+E+ GK  G++ G++   ++V  +    
Sbjct: 356 EKQSRLERLQALQKRTTMEINDVLLGTRQTVLVEREGKRPGQISGKADNGRTVNFSGDRS 415

Query: 446 NIGDIIKVRITDVKISTLYGELV 468
            IG  + +RI  V  ++L GEL+
Sbjct: 416 LIGTFVDLRIIQVFQNSLLGELL 438


>gi|32475869|ref|NP_868863.1| MiaB protein- tRNA-thiotransferase [Rhodopirellula baltica SH 1]
 gi|81659862|sp|Q7ULM9|MIAB_RHOBA RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|32446412|emb|CAD76240.1| probable MiaB protein-putative tRNA-thiotransferase [Rhodopirellula
           baltica SH 1]
          Length = 479

 Score =  307 bits (787), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 176/462 (38%), Positives = 267/462 (57%), Gaps = 30/462 (6%)

Query: 28  FVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRI 87
           ++K+ GCQMNV DS  +       GY  V++  +ADL++ NTC IRE+A EK YS LG++
Sbjct: 9   YIKTVGCQMNVLDSEMVIADLKRHGYTVVDTPGEADLLLYNTCSIREQAEEKTYSALGKL 68

Query: 88  RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147
           +  K    ++     + V GC+AQ + E I RR+P V++VVGP   + +P++L +   G+
Sbjct: 69  KETKARHPEK----TIGVMGCMAQKDQETIFRRAPFVDMVVGPGQLHAIPDMLTKVTSGE 124

Query: 148 ---------RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
                    R       V    E    +     R     A+L IQ GCDKFCT+CVVP T
Sbjct: 125 GRQMAVSLGRKDGKQTVVARSHETFDPLRDPTMRPTPFQAYLRIQIGCDKFCTYCVVPNT 184

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258
           RG E  RS  ++V EAR L + G  EITLLGQ VN++R +G DGE    + LL  L +I 
Sbjct: 185 RGPEQGRSPEEIVSEARVLAEQGALEITLLGQTVNSYRHRGPDGE-TDMAGLLERLHDID 243

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           GL R+++ T++P+DM+  L++   DL  + PYLH+P QSGSD +LK M R +T  +Y ++
Sbjct: 244 GLKRIKFVTNYPKDMTARLLETIRDLPKVSPYLHVPAQSGSDAVLKRMKRGYTIADYMEM 303

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT-PGSN 377
            +RI +V P+ ++SSDFIVGF GETD+DF+ ++ L+++  +  +F F+YS R GT   +N
Sbjct: 304 FERIETVLPEASVSSDFIVGFCGETDEDFQKSVKLIERCRFKNSFIFQYSVREGTKAAAN 363

Query: 378 MLEQVDENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK------- 427
           +++ V   VKA R   LL +Q ++ ++    N   +G  +EVL+E   K+  K       
Sbjct: 364 LIDDVPREVKAARNNELLAVQDRISKED---NQKLIGDTVEVLVEGPSKKADKSDLDAPI 420

Query: 428 --LVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
             + GR+   + VV +      G ++ ++I DV   TL G +
Sbjct: 421 VQMTGRTICDRIVVFDGNRRQAGQLMDIQIDDVSSHTLIGRV 462


>gi|254551787|ref|ZP_05142234.1| hypothetical alanine, arginine-rich protein [Mycobacterium
           tuberculosis '98-R604 INH-RIF-EM']
          Length = 512

 Score =  307 bits (786), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 170/457 (37%), Positives = 267/457 (58%), Gaps = 26/457 (5%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           + V++YGCQMNV+DS R+  +  + GY R     +AD++V NTC +RE A  ++Y  L  
Sbjct: 27  YQVRTYGCQMNVHDSERLAGLLEAAGYRRATDGSEADVVVFNTCAVRENADNRLYGNLSH 86

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           +      R +   D+ + V GC+AQ + + +LRR+P V+VV G      LP LLERAR  
Sbjct: 87  L----APRKRANPDMQIAVGGCLAQKDRDAVLRRAPWVDVVFGTHNIGSLPTLLERARHN 142

Query: 147 KRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           K   V+   +++     L       +R+    A+++I  GC+  CTFC+VP  RG E+ R
Sbjct: 143 KVAQVEIAEALQQFPSSLP-----SSRESAYAAWVSISVGCNNSCTFCIVPSLRGREVDR 197

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAW----RGKGLDGEKCTFSDLLYSLSEIKGLV 261
           S + ++ E R L+++GV E+TLLGQNVNA+        L   +  F++LL +  +I GL 
Sbjct: 198 SPADILAEVRSLVNDGVLEVTLLGQNVNAYGVSFADPALPRNRGAFAELLRACGDIDGLE 257

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+T+ HP + +D +I+A      + P LH+P+QSGSDRIL++M R + A  Y  II+R
Sbjct: 258 RVRFTSPHPAEFTDDVIEAMAQTRNVCPALHMPLQSGSDRILRAMRRSYRAERYLGIIER 317

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R+  P  AI++D IVGFPGET++DF AT+D+V +  +A AF+F+YS R GTP + +  Q
Sbjct: 318 VRAAIPHAAITTDLIVGFPGETEEDFAATLDVVRRARFAAAFTFQYSKRPGTPAAQLDGQ 377

Query: 382 VDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK----GKLVGRSPW 434
           + + V   + ERL+ LQ+++    +  N A VGQ +EVL+      K     ++ GR+  
Sbjct: 378 LPKAVVQERYERLIALQEQI---SLEANRALVGQAVEVLVATGEGRKDTVTARMSGRARD 434

Query: 435 LQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELVV 469
            + V   +    +  GD+I  ++T+     L  +  V
Sbjct: 435 GRLVHFTAGQPRVRPGDVITTKVTEAAPHHLIADAGV 471


>gi|108759982|ref|YP_631966.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Myxococcus
           xanthus DK 1622]
 gi|122388752|sp|Q1D5V7|MIAB_MYXXD RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|108463862|gb|ABF89047.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Myxococcus xanthus DK
           1622]
          Length = 462

 Score =  307 bits (786), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 185/452 (40%), Positives = 271/452 (59%), Gaps = 25/452 (5%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +R+F+ ++GCQMNV DSLRM ++     Y      D+ADLI+LNTC IREKA +K+ S L
Sbjct: 2   KRYFIHTFGCQMNVNDSLRMSEVLSQMSYAPTPVPDNADLIILNTCSIREKAEDKMLSAL 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR + +K SR       L+ V GCVAQ E +++L++ P ++ V GP    RLP+++ R  
Sbjct: 62  GRYKPVKASR-----GALIGVGGCVAQQEKDKLLKKVPYLDFVFGPDNIARLPDIIGRVS 116

Query: 145 FGK-RVVDTDY--SVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
             + RVV+T +  S E  F R    D   +R + VT F+T+ +GCD  C+FC+VP+TRG 
Sbjct: 117 AERERVVETAFVNSEEYVFPR---ADPETSRGK-VTEFVTVMKGCDNVCSFCIVPHTRGR 172

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E+SR+   V+ E   L   GV E+TL+GQNVN++ G        +F+ LL   +E+ G+ 
Sbjct: 173 EVSRAFPDVLVEVADLAKVGVREVTLIGQNVNSYAGG------ISFAQLLLRTAEVPGIE 226

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHP D+SD LI+A      + P+ HLPVQ GSDRILK M R +T  +Y + + +
Sbjct: 227 RVRFTTSHPHDLSDELIEAFRVQPKITPHFHLPVQCGSDRILKMMRRDYTVVQYLERLAK 286

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R  RP IA+++D IVGFPGET+++F  TM L +++ Y   FSF YSPR  T G+ + E+
Sbjct: 287 LREARPGIAVTTDIIVGFPGETEEEFEMTMQLTEQVRYDNQFSFVYSPRPKT-GAALREK 345

Query: 382 ----VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQ 436
               V   VK  RL  LQK  R        A VG  +EV++E H + +  K  GR+P  +
Sbjct: 346 DWGPVPHEVKIARLERLQKLQRRISGEITAALVGSEVEVMVEGHSRYDATKRFGRTPENR 405

Query: 437 SVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           +V  +  +   G  + V++     + L G+ V
Sbjct: 406 TVNFDG-DAPAGSFVTVKVERATPNQLAGKQV 436


>gi|303233772|ref|ZP_07320426.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Finegoldia magna
           BVS033A4]
 gi|302495206|gb|EFL54958.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Finegoldia magna
           BVS033A4]
          Length = 461

 Score =  307 bits (786), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 174/446 (39%), Positives = 271/446 (60%), Gaps = 16/446 (3%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           + + ++GCQMN +DS +++ +  + G+E+ +   DAD I+ NTC +RE A  KVY  LG 
Sbjct: 27  YSIITHGCQMNEHDSEKIKTLLENMGFEKSDEKLDADFIIFNTCLVRENAEMKVYGQLGA 86

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQA-EGEEILR-RSPIVNVVVGPQTYYRLPELLERA- 143
           ++NLK    +E  D+L+ V GC+ Q     +I+R + P V++V G      LP L++R  
Sbjct: 87  LKNLK----RENPDMLIAVCGCMMQTGPARDIIREKYPQVDIVFGVNNINSLPYLIDRHL 142

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             GK VVD +   +D  E ++I      R      ++ I  GC+ FCT+C+VPY RG E 
Sbjct: 143 SSGKLVVDIERK-DDIDEDITI-----KRDNEYVGYVNIMTGCNNFCTYCIVPYARGREQ 196

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SRS+  ++ E +++++ G  +ITLLGQNVN++ GK L+    TF++LL  +++++GL RL
Sbjct: 197 SRSVESILSEVKRMVNQGYKDITLLGQNVNSY-GKTLE-HPVTFTELLTKVNDVEGLERL 254

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+ TSHP+D+SD LI+A G LD +   +HLP Q+GS+ +L+ M+RR+T   Y + +++++
Sbjct: 255 RFLTSHPKDISDELIEAMGKLDKVCENIHLPFQAGSNSVLERMHRRYTKESYLEKVEKLK 314

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
                I  S+D IVGFPGET++DF+ T+D+V K+GY QAF+FKY+ R GT      +QVD
Sbjct: 315 KSVKGITFSTDIIVGFPGETEEDFQDTLDVVRKVGYEQAFTFKYNRRPGTKADLFEDQVD 374

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVLNS 442
           E+VK +RL  L           N + +G I EVLIE   K   + + GR+   + V +  
Sbjct: 375 EDVKQDRLERLLDVAYPIFYEKNKSYLGTIQEVLIEGESKNNPEVMTGRTRTFKLVNVKC 434

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
               IG ++  +I D     L GE+V
Sbjct: 435 DKSYIGKLVNTKIVDFNSFALTGEMV 460


>gi|312143592|ref|YP_003995038.1| RNA modification enzyme, MiaB family [Halanaerobium sp.
           'sapolanicus']
 gi|311904243|gb|ADQ14684.1| RNA modification enzyme, MiaB family [Halanaerobium sp.
           'sapolanicus']
          Length = 442

 Score =  307 bits (786), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 174/449 (38%), Positives = 278/449 (61%), Gaps = 21/449 (4%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           + + +YGCQMN +DS ++  M  + GY   N +++AD+++LNTC IRE A  KV+  LG+
Sbjct: 7   YHIITYGCQMNEHDSEKLAGMLENIGYNNTNKLENADIVLLNTCTIRENAELKVFGKLGQ 66

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           ++  K    ++  DL++ + GC+ Q E   EEI ++   V+++ G    +++PEL+++  
Sbjct: 67  LKEYK----RKNPDLIIGIGGCMMQLEEPVEEIYKKYRHVDLIFGTHNIHQVPELIKKIE 122

Query: 145 FGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             + RVV+    V D+ E L I D    R+   +A+++I +GCD FCT+C+VPY RG E 
Sbjct: 123 KNRERVVE----VWDQEEGL-IPDLPSQRESEHSAWISIIQGCDNFCTYCIVPYVRGRER 177

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR L  ++ EA KL   GV E+TLLGQNVN++ G  L  E+  F  LL  L+++  L R+
Sbjct: 178 SRPLEAIIKEAEKLAAEGVKEVTLLGQNVNSY-GNDL-AEEIDFPLLLEELNKVDSLARI 235

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+ TSHPRD S+ L+ A  +L+ +  ++HLP+QSGS++ILK MNR ++   Y   +  I+
Sbjct: 236 RFMTSHPRDFSEKLLLAIKNLEKVAKHIHLPIQSGSNKILKEMNRGYSREYYIDTVKEIQ 295

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           +  P+ AIS+DFIVGFPGE+D+DF  T+ LV ++ +  A++F YSPR GTP +   +Q+ 
Sbjct: 296 NKMPEAAISTDFIVGFPGESDEDFEQTLKLVKELRFDMAYTFIYSPRSGTPAAKREDQIA 355

Query: 384 ENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSPWLQSVV 439
           E VK ER   L+ +Q ++  Q+   N   +G+I ++L+     +++    GR+   +   
Sbjct: 356 EEVKKERLNKLMDIQNRISYQK---NQKLIGKIQKILVTGPSNRDENVYEGRTGTNKICF 412

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
           +N +   IG I+KV+I   K  TL G +V
Sbjct: 413 INKRPDLIGKIVKVKIDSAKSWTLQGTVV 441


>gi|327540187|gb|EGF26778.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Rhodopirellula baltica
           WH47]
          Length = 479

 Score =  306 bits (785), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 175/462 (37%), Positives = 269/462 (58%), Gaps = 30/462 (6%)

Query: 28  FVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRI 87
           ++K+ GCQMNV DS  +       GY  V++  +ADL++ NTC IRE+A EK YS LG++
Sbjct: 9   YIKTVGCQMNVLDSEMVIADLKRHGYTVVDTPGEADLLLYNTCSIREQAEEKTYSALGKL 68

Query: 88  RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147
           +  K    ++     + V GC+AQ + E I RR+P V++VVGP   + +P++L +   G+
Sbjct: 69  KETKARHPEK----TIGVMGCMAQKDQETIFRRAPFVDMVVGPGQLHAIPDMLTKVTSGE 124

Query: 148 -RVVDTDYSVED--------KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
            R +      +D          E    +     R     A+L IQ GCDKFCT+CVVP T
Sbjct: 125 GRQIAVSLGRKDGKQTVVARSHETFDPLRDPTMRPTPFQAYLRIQIGCDKFCTYCVVPNT 184

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258
           RG E  RS  ++V EAR L + G  EITLLGQ VN++R +G DGE    + LL  L +I 
Sbjct: 185 RGPEQGRSPEEIVSEARVLAEQGALEITLLGQTVNSYRHRGPDGE-TDMAGLLERLHDID 243

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           GL R+++ T++P+DM+  L++   DL  + PYLH+P QSGSD +LK M R +T  +Y ++
Sbjct: 244 GLKRIKFVTNYPKDMTARLLETIRDLPKVSPYLHVPAQSGSDAVLKRMKRGYTIADYMEM 303

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT-PGSN 377
            +RI ++ P+ ++SSDFIVGF GETD+DF+ ++ L+++  +  +F F+YS R GT   +N
Sbjct: 304 FERIETILPEASVSSDFIVGFCGETDEDFQKSVKLIERCRFKNSFIFQYSVREGTKAAAN 363

Query: 378 MLEQVDENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK------- 427
           +++ V   VKA R   LL +Q ++ ++    N   +G  +EVL+E   K+  K       
Sbjct: 364 LIDDVPREVKAARNNELLAVQDRISKED---NQKLIGDTVEVLVEGPSKKADKSDLDAPI 420

Query: 428 --LVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
             + GR+   + VV +      G ++ ++I DV   TL G +
Sbjct: 421 VQMTGRTICDRIVVFDGNRRQAGQLMDIQIDDVSSHTLIGRV 462


>gi|291166609|gb|EFE28655.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Filifactor alocis ATCC
           35896]
          Length = 483

 Score =  306 bits (785), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 178/450 (39%), Positives = 280/450 (62%), Gaps = 19/450 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           ++ + ++GCQMN +DS  +  MF   GYE  +  +DAD+I+ NTC IRE A  KVY  L 
Sbjct: 39  KYMITTWGCQMNEHDSENLSGMFEYMGYELTDREEDADVILYNTCAIRENAELKVYGNLS 98

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELL--E 141
            ++++K +R     D+++ V GC+ Q     EE+ ++   V++V G    Y+ PE+L  +
Sbjct: 99  LLKHIKENR----DDMIIGVCGCMMQQPHVVEELKKKYSHVDIVFGTHNIYQFPEMLYQQ 154

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
                 +++D  + ++ +     I++G    RK  V +F+ I  GC+ FCT+C+VPYTRG
Sbjct: 155 LTSNAGQLIDV-WDIDGQ-----IIEGLPTTRKFDVKSFVNIMYGCNNFCTYCIVPYTRG 208

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E SR    ++DE R L + G+ EITLLGQNVN++ GK L+ +  TF+DLL  +++I G+
Sbjct: 209 RERSREPKDILDEIRFLANEGIKEITLLGQNVNSY-GKTLE-QNYTFADLLRDVNDIDGI 266

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+ +SHP+D+SD LI A  +L  +   LHLP+QSGS R+LK MNR ++  +Y  ++D
Sbjct: 267 ERIRFMSSHPKDLSDELIDAMAELPKVCESLHLPIQSGSTRLLKKMNRHYSKEDYYLLVD 326

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R+  P+I  ++D +VGFPGET++DF  TM++V+++ Y  AF+F YS R GTP   M +
Sbjct: 327 KLRAKIPNIGFTTDIMVGFPGETEEDFLETMEVVERVQYDSAFTFLYSVRKGTPAEKMED 386

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVV 439
           QV E VK ER   L + +       N A  G+++EVL+E   K ++ KL GR+   + V 
Sbjct: 387 QVPEEVKKERFQRLLEPVNRIAAEKNHAYAGKVVEVLVESVSKRDETKLTGRTRENKLVN 446

Query: 440 LNSKNHN-IGDIIKVRITDVKISTLYGELV 468
            +    + IG I+ V+IT+ K  +L GE+V
Sbjct: 447 FDRPEGDWIGKIVHVKITNPKSFSLNGEMV 476


>gi|169350629|ref|ZP_02867567.1| hypothetical protein CLOSPI_01401 [Clostridium spiroforme DSM 1552]
 gi|169292683|gb|EDS74816.1| hypothetical protein CLOSPI_01401 [Clostridium spiroforme DSM 1552]
          Length = 481

 Score =  306 bits (785), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 174/462 (37%), Positives = 269/462 (58%), Gaps = 15/462 (3%)

Query: 10  VAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNT 69
           V H+ + ++ +  V +++++++YGCQ N  DS  +  +  S  Y   + + +AD+I+LNT
Sbjct: 30  VYHVPADMI-KAGVGKKYYIQTYGCQANERDSETLSGILESMSYRATDEIKEADIIILNT 88

Query: 70  CHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVV 127
           C IRE A EKV+  +G ++NLK    K   +L+  + GC+AQ E     IL + P V+++
Sbjct: 89  CAIRENAEEKVFGKVGYVKNLK----KTNPNLIFAMCGCMAQEEVVVNRILEKHPHVDLI 144

Query: 128 VGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCD 187
            G    +RLPELL+ A + K ++   +S E       I +    R     A++ I  GC+
Sbjct: 145 FGTHNIHRLPELLKEAFYSKEMIIEVWSKEGDV----IENAPVKRDSKHKAWVNIMYGCN 200

Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTF 247
           KFCT+C+VPYTRG E SR    +V E   L+ +G  EITLLGQNVN++ GK L G    F
Sbjct: 201 KFCTYCIVPYTRGKERSRLAKDIVKEVESLVADGYQEITLLGQNVNSY-GKDL-GNDYNF 258

Query: 248 SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307
           S+LL  +++  G+ R+R+TTSHP D S+ +IK     D +MP +HLPVQSG++ +LK M 
Sbjct: 259 SNLLEDVAKT-GIPRIRFTTSHPWDFSEDMIKIIAKYDNIMPAIHLPVQSGNNEVLKLMG 317

Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           RR+T  +Y ++  +I+   PD  I++D IVGFP ET + +  T+ L  +  Y  A++F Y
Sbjct: 318 RRYTREQYLELFYKIKKYIPDCTITTDIIVGFPNETHEQYLDTLSLYQECEYDLAYTFVY 377

Query: 368 SPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKG 426
           SPR GTP + M++ V    K +RL  L + + E+    N   + + +EVL++    K+  
Sbjct: 378 SPREGTPAAKMVDNVSSEEKDQRLYRLNEIVNEKAYKQNQRFLNKTVEVLVDGTSKKDDT 437

Query: 427 KLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            L G +   + V       +IG IIKV+IT+ K   L GE +
Sbjct: 438 MLTGYTRHQKLVNFKGNPKDIGKIIKVKITEAKTWALKGEAI 479


>gi|300868939|ref|ZP_07113544.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Oscillatoria sp. PCC 6506]
 gi|300333062|emb|CBN58736.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Oscillatoria sp. PCC 6506]
          Length = 452

 Score =  306 bits (785), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 180/455 (39%), Positives = 275/455 (60%), Gaps = 23/455 (5%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
            P+R+ + ++GCQMN  DS RM  +    G+E     ++A LI+ NTC IR+ A  KVYS
Sbjct: 4   TPRRYHITTFGCQMNKADSERMAGILEDMGFEWSEDPNEASLILYNTCSIRDSAEHKVYS 63

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
           +LGR    +  R +   +L ++VAGCVAQ EGE +LRR P +++V+GPQ   RL +LLE+
Sbjct: 64  YLGR----QAGRKRVEPELTLIVAGCVAQQEGEALLRRVPELDLVMGPQHANRLQDLLEQ 119

Query: 143 ARFGKRVVDTD--YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
              G +VV TD  + +ED  +          R   VTA++ +  GC++ CT+CVVP  RG
Sbjct: 120 VFDGNQVVATDAVHIMEDITKP--------RRDSKVTAWVNVIYGCNERCTYCVVPNVRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC------TFSDLLYSL 254
           IE SR+   +  E  +L   G  E+TLLGQN++A+ G+ L G K       T +DLLY +
Sbjct: 172 IEQSRTPKAIRAEMEELGRQGYKEVTLLGQNIDAY-GRDLPGTKPDGSNQYTLTDLLYYV 230

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
           S++ G+ R+R+ TSHPR  ++ LIKA  +L  +  + H+P QSG + ILK+M R +T  +
Sbjct: 231 SDVPGIERIRFATSHPRYFTERLIKACAELPQVCEHFHIPFQSGDNDILKAMARGYTQEK 290

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
           YR+II+ IR   PD +IS+D IVGFPGE++  F  T++LV  + +    +  YSPR GTP
Sbjct: 291 YRRIIETIRQYMPDASISADAIVGFPGESEAQFEKTLNLVVDMRFDLVNTAAYSPRPGTP 350

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSP 433
            +    Q+ E VKA+RL  L   + +  +  +   +G+I EVL+E ++ K+  +++GR  
Sbjct: 351 AALWDTQLSEEVKADRLQRLNHVVTQTAMERSQRYLGRIEEVLVEDQNQKDATQVMGRGR 410

Query: 434 WLQSVVLNSKNHNI-GDIIKVRITDVKISTLYGEL 467
             +   L      + G +++V+ITDV+  +L G+L
Sbjct: 411 GNRLTFLRGNIEELRGQLVQVKITDVRAFSLTGDL 445


>gi|257063789|ref|YP_003143461.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
           [Slackia heliotrinireducens DSM 20476]
 gi|256791442|gb|ACV22112.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
           [Slackia heliotrinireducens DSM 20476]
          Length = 451

 Score =  306 bits (785), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 176/458 (38%), Positives = 275/458 (60%), Gaps = 15/458 (3%)

Query: 18  VDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA 77
           ++Q +  + F+V +YGCQMN +DS R+  M  + G  R +  +D+++++  TC +RE A 
Sbjct: 1   MNQFLTGRSFYVFTYGCQMNEHDSERIVGMLEACGAHRTDVFEDSEIVIFMTCCVREAAD 60

Query: 78  EKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLP 137
            ++   +  I+N+   R  E    +V + GC+ Q +G++++     V+VV G Q   RLP
Sbjct: 61  VRLRGQVNSIKNVPLPRTSELKKRVVCIGGCIGQRDGQQLIDDMHHVDVVFGTQNIERLP 120

Query: 138 ELLERA-RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
            L+      G  + +    V+++ +  S  D    R+    A+L I  GC+ FCT+C+VP
Sbjct: 121 YLINGVLSRGGHIAE----VQEESDTFS-TDLPSKREHDWAAWLPITVGCNNFCTYCIVP 175

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256
           Y RG E SR++  VV +A+ L+  GV EITLLGQNVN++ G+ L GE   F+D+L  ++ 
Sbjct: 176 YVRGRERSRAIESVVADAQALVAEGVQEITLLGQNVNSY-GRDLYGEP-RFADVLKGVAA 233

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
             G+ RLR+ TSHP+D++D +I+A G L  LMP LHLPVQSGSD ILK M+R +T   Y 
Sbjct: 234 -TGVPRLRFATSHPKDLTDEVIEAFGTLGNLMPALHLPVQSGSDAILKRMHRSYTVEHYL 292

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
            +ID++R+  PDI++S+D IVGFPGET++DF+AT DLV+K+GY+Q F+F YSPR GTP +
Sbjct: 293 GLIDKLRAACPDISLSTDIIVGFPGETEEDFQATYDLVEKVGYSQVFTFIYSPREGTPAA 352

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GRSP-- 433
            M +    +V  ER   L + ++++    N     + ++VL+E   +    ++ GRSP  
Sbjct: 353 KMKDDTPRSVIQERFERLVQMVQDKAYEQNQRFADRTLDVLVEGVSQRNDSIIAGRSPHN 412

Query: 434 -WLQSVVLNSKN--HNIGDIIKVRITDVKISTLYGELV 468
             + + +   K      G II V + + K   L G +V
Sbjct: 413 AMVHAPIPEGKTIEQLKGTIIPVHVDEAKTWYLSGTVV 450


>gi|269127492|ref|YP_003300862.1| RNA modification enzyme, MiaB family [Thermomonospora curvata DSM
           43183]
 gi|268312450|gb|ACY98824.1| RNA modification enzyme, MiaB family [Thermomonospora curvata DSM
           43183]
          Length = 497

 Score =  306 bits (785), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 168/444 (37%), Positives = 265/444 (59%), Gaps = 24/444 (5%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
            P+ + +++YGCQMNV+DS R+  +    GY      ++ D++V NTC +RE A  ++Y 
Sbjct: 10  APRTYQIRTYGCQMNVHDSERLAGLLEEAGYVAAGESEEPDVVVFNTCAVRENADNRLYG 69

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            LG +R +K++R      + + V GC+AQ + E I+RR+P V+VV G      LP LLER
Sbjct: 70  NLGHLRPVKDARP----GMQIAVGGCLAQKDREAIVRRAPWVDVVFGTHNIGSLPALLER 125

Query: 143 ARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           AR  +   V+   ++E     L        R+    A++ I  GC+  CTFC+VP  RG 
Sbjct: 126 ARIQREAQVEIKEALETFPSTLPT-----RRESPYAAWVAISVGCNNTCTFCIVPSLRGR 180

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E  R   +++ E   L+  GV E+TLLGQNVNA+  +   G++  F+ LL +  +I+GL 
Sbjct: 181 EKDRRPGEILAEIEALVAEGVLEVTLLGQNVNAYGSEF--GDRQAFAKLLRACGQIEGLE 238

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+T+ HPRD +D +I A  +   +MP LH+P+QSGSDRIL++M R +    +  II+R
Sbjct: 239 RVRFTSPHPRDFTDDVIAAMAETPNVMPSLHMPLQSGSDRILRAMRRSYRQERFLGIIER 298

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R+  P+ AI++D IVGFPGETD+DF  T+ +V +  +A AF+F+YS R GTP + M  Q
Sbjct: 299 VRAAMPEAAITTDIIVGFPGETDEDFEQTLHVVRQARFAGAFTFQYSKRPGTPAAEMDGQ 358

Query: 382 VDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKG---KLVGRSPW 434
           V + V   + ERL+ LQ+++  ++   N   +G+ +EVL+ E  G++     ++ GR+P 
Sbjct: 359 VPKEVVQERYERLVALQEQISWEE---NKKQLGRTLEVLVAEGEGRKDDATRRMSGRAPD 415

Query: 435 LQSVVLNSKNHNI--GDIIKVRIT 456
            + V        +  GD++ V +T
Sbjct: 416 NRLVHFRPPKEPVRPGDMVTVEVT 439


>gi|72161215|ref|YP_288872.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Thermobifida
           fusca YX]
 gi|123774758|sp|Q47RR8|MIAB_THEFY RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|71914947|gb|AAZ54849.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Thermobifida fusca YX]
          Length = 494

 Score =  306 bits (784), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 159/395 (40%), Positives = 247/395 (62%), Gaps = 16/395 (4%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           + V++YGCQMNV+DS R+  +  + GY+R       D++V NTC +RE A  ++Y  LG+
Sbjct: 7   YQVRTYGCQMNVHDSERLSGLLEAAGYQRAAEGTTPDVVVFNTCAVRENADNRLYGNLGQ 66

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           +R +K++      D+ + V GC+AQ +  EI+RR+P V+VV G      LP LLERAR  
Sbjct: 67  LRPVKDA----NPDMQIAVGGCLAQKDRGEIIRRAPWVDVVFGTHNIGSLPALLERARVQ 122

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           +   +    + +  ER         R+    A++ I  GC+  CTFC+VP  RG E  R 
Sbjct: 123 R---EAQVEIVESLERFPSTLP-TRRESVYAAWVAISVGCNNTCTFCIVPALRGKEKDRR 178

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
              ++ E R ++  G  E+TLLGQNVNA+  +   G++  FS LL +  EI+GL R+R+T
Sbjct: 179 PGDILAEIRAVVAEGAIEVTLLGQNVNAYGSEF--GDRQAFSKLLRACGEIEGLERVRFT 236

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
           + HPRD +D +I A  +   +MP LH+P+QSGSDRIL++M R + A  + +I++++R   
Sbjct: 237 SPHPRDFTDDVIAAMAETPNVMPQLHMPLQSGSDRILRAMRRSYRAERFLRIVEKVREAI 296

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           PD AI++D IVGFPGET++DF  T+ +++++ +A AF+F+YS R GTP ++M  QV   V
Sbjct: 297 PDAAITTDVIVGFPGETEEDFAETLRVMEEVRFAHAFTFQYSKRPGTPAASMDNQVPREV 356

Query: 387 ---KAERLLCLQKKLREQQVSFNDACVGQIIEVLI 418
              + +RLL LQ+++ E++   N   VG+ +EVL+
Sbjct: 357 VKERYQRLLELQERISEEE---NAKFVGREVEVLV 388


>gi|304440470|ref|ZP_07400359.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Peptoniphilus duerdenii
           ATCC BAA-1640]
 gi|304371222|gb|EFM24839.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Peptoniphilus duerdenii
           ATCC BAA-1640]
          Length = 476

 Score =  306 bits (784), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 181/453 (39%), Positives = 267/453 (58%), Gaps = 34/453 (7%)

Query: 28  FVKSYGCQMNVYDS------LRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           +++++GCQMN +DS      LR  D + S          ++DL ++NTC IR+ A +KVY
Sbjct: 43  YIETFGCQMNEHDSEKIDWLLRQMDFYMSDR--------NSDLYIINTCSIRKNAEDKVY 94

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEE--ILRRSPIVNVVVGPQTYYRLPEL 139
             LG ++  K    +E  +LLV V GC+ Q +     +L + P V+++ G    Y+ P+L
Sbjct: 95  GRLGELKGKK----RENENLLVAVCGCMMQRKESRDIVLEKFPNVDMIFGTNNIYKFPKL 150

Query: 140 L-ERARFGKRVVD--TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
           L ER   G R VD   +YS ED          G NR     +F+ I  GC+ FCT+C+VP
Sbjct: 151 LLERLENGVRAVDIEENYSNEDNL-------LGANRMYSFKSFVNIMYGCNNFCTYCIVP 203

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256
           YTRG E SR    +V+E + L  +GV E+TLLGQNVN++ GK L     +F DLL  ++E
Sbjct: 204 YTRGREKSRRPMDIVNEIKGLASHGVKEVTLLGQNVNSY-GKSL-SNNVSFVDLLKMVNE 261

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           I G+ R+R+ TSHPRD S  L  A+ DLD L  +LHLPVQ+GS ++L+ MNR +T  EY 
Sbjct: 262 IDGIERIRFMTSHPRDFSKELAYAYRDLDKLKNFLHLPVQAGSSKVLRDMNRHYTKEEYI 321

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
           + ID ++ + P+IA+S+D +VGFP ET++DF+ T+DL   + Y  +F+F YS R GT   
Sbjct: 322 RKIDMVKEIVPEIALSTDLMVGFPTETEEDFKDTLDLCKYVEYDTSFTFIYSMREGTKAY 381

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWL 435
            M +QV E +K +R   L   +   Q+  N+  +G++ +VL+E   K ++ KL GR+   
Sbjct: 382 EM-DQVPEEIKHDRFNRLLDLIYPIQLKKNENEIGKVRKVLVESTSKSDENKLSGRTDEF 440

Query: 436 QSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           + V  +     IG I+ V ITD    +L G+LV
Sbjct: 441 KLVNFDGPKDLIGKIVDVNITDANTFSLKGDLV 473


>gi|195953226|ref|YP_002121516.1| RNA modification enzyme, MiaB family [Hydrogenobaculum sp. Y04AAS1]
 gi|229890609|sp|B4U8S7|MIAB_HYDS0 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|195932838|gb|ACG57538.1| RNA modification enzyme, MiaB family [Hydrogenobaculum sp. Y04AAS1]
          Length = 435

 Score =  306 bits (784), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 172/447 (38%), Positives = 269/447 (60%), Gaps = 26/447 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           ++F+K+YGCQMN+ DS +++ +  +QGYE     +DADL++LNTC IREK  +KV+S LG
Sbjct: 2   KYFIKTYGCQMNINDSEKIKGILQTQGYEPATREEDADLVILNTCTIREKPDQKVWSHLG 61

Query: 86  RIRNLK--NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
            I+ LK  N  IK G      V GC+AQ  G EI  + P +++V G +  + +P+LLE  
Sbjct: 62  EIKKLKSINPNIKIG------VCGCMAQRAGYEIASKMPFIDLVFGTKNIHHMPKLLEDV 115

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYN-RKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           + G R ++    +E++    +I+D     R     A++TI  GCDK CT+CVVP+TRG E
Sbjct: 116 KVGNRAIEI---LEEEDPSENILDSYPTVRDNSYCAYVTIMRGCDKECTYCVVPFTRGKE 172

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR+   ++DE + L+D+GV EI L+GQNV A+ GK +D     F  LL ++S+I+G+ R
Sbjct: 173 RSRNPQSILDEVKSLVDSGVMEIHLIGQNVTAY-GKDID---YPFYKLLENISKIEGVKR 228

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TT HP DM+D +I+   +L  ++ +LHLP Q+GSDRIL+ M R +T   Y   I+++
Sbjct: 229 IRFTTGHPIDMTDDIIETMANLPNMVNHLHLPFQAGSDRILELMKRNYTKAYYLNRIEKL 288

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           ++   DI  S+D I+GFP ET++DF+ T+D+V  + + Q FSFKYS R  TP   M + +
Sbjct: 289 KAKIKDITFSTDIIIGFPTETEEDFQHTLDVVQTVEFEQVFSFKYSKRPNTPAYYMEDDL 348

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACV----GQIIEVLIEKHGKEKGKLVGRSPWLQSV 438
            + +K +R+    K+L E Q +     +      + +VL+E   K+    +GR+      
Sbjct: 349 TDEIKTDRI----KRLLEIQKAITSKLMQRYKNTVQKVLVE--DKKGNTYIGRTTTNVWC 402

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYG 465
            + S    +G  ++V I      +L G
Sbjct: 403 NITSSQDILGKEVEVLIAKAGFQSLDG 429


>gi|258405711|ref|YP_003198453.1| (dimethylallyl)adenosine tRNA methylthiotransferase
           [Desulfohalobium retbaense DSM 5692]
 gi|257797938|gb|ACV68875.1| RNA modification enzyme, MiaB family [Desulfohalobium retbaense DSM
           5692]
          Length = 445

 Score =  306 bits (784), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 173/448 (38%), Positives = 266/448 (59%), Gaps = 15/448 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           RF + ++GCQMNV DS  +       G E  +  + A++ V+NTC +REK  +KVYS LG
Sbjct: 2   RFHIITHGCQMNVCDSDWLHRALVDLGGEPADE-ESAEVFVVNTCSVREKPEQKVYSLLG 60

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R++       +   ++ V V GCVAQ  G    +R P V +V G      +P+ ++R R 
Sbjct: 61  RLQGY----WQRNPNVFVAVGGCVAQQVGTRFWKRFPHVRLVFGTDGIAMVPQAVDRLRS 116

Query: 146 GKRVVDTDYSVEDKF-ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
             ++  +    E+ + ER  +       +    AF+ I +GCD +C +C+VPYTRG + S
Sbjct: 117 DPQLRLSLLDFEEHYPEREQLWP---EAEVPAQAFVNIMQGCDNYCAYCIVPYTRGRQKS 173

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           RS + V+ E R+L   G  EITLLGQNVN++ G+  +G+  +F+ LL  +  I G+ ++R
Sbjct: 174 RSSAAVLQECRELARRGAREITLLGQNVNSY-GQDANGDGTSFAALLEQVCAIPGIEQVR 232

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +TTSHP+D++  +I A G L  L P+LHLP+QSGSDRILK+M RR+T   Y  I+  +R 
Sbjct: 233 FTTSHPKDIAPEVIAAFGRLPELSPHLHLPLQSGSDRILKAMRRRYTRQRYLDIVTGLRQ 292

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
            RP+I +++D IVGFPGET+ DF  T++++ ++G+A +FSFKYS R G     M ++V E
Sbjct: 293 ARPEITLTTDLIVGFPGETEADFEQTLEMMREVGFASSFSFKYSDRPGVAAEQMEDKVPE 352

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV---GRSPWLQSVVLN 441
            +K+ RL  LQ    E       A VG+ + VL+ + G++ G  V   GR P  + V   
Sbjct: 353 EIKSHRLQRLQSLQEELTGEALQAEVGRHVTVLLREPGRQDGGGVIWRGRDPGGRVVNCR 412

Query: 442 SK--NHNIGDIIKVRITDVKISTLYGEL 467
           ++  +  IG  + VR+T+ K  +L+GE+
Sbjct: 413 TELDSALIGSYVGVRVTEAKKHSLFGEV 440


>gi|119510198|ref|ZP_01629336.1| tRNA-i(6)A37 modification enzyme MiaB [Nodularia spumigena CCY9414]
 gi|119465148|gb|EAW46047.1| tRNA-i(6)A37 modification enzyme MiaB [Nodularia spumigena CCY9414]
          Length = 454

 Score =  306 bits (784), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 182/454 (40%), Positives = 270/454 (59%), Gaps = 23/454 (5%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + + + ++GCQMN  DS RM  +    G+E     +DADLI+ NTC IR+ A  KVYS+L
Sbjct: 6   RHYHIITFGCQMNKADSERMAGILEDMGFEWSEDPNDADLILYNTCTIRDNAEHKVYSYL 65

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR    +  R +E   L ++VAGCVAQ EGE +LRR P +++V+GPQ   RL +LL    
Sbjct: 66  GR----QAKRKQEEPGLTLIVAGCVAQQEGEALLRRVPELDLVMGPQHANRLQDLLTSVL 121

Query: 145 FGKRVVDTD--YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            G +VV T+  + +ED  +          R   VTA++ I  GC++ CT+CVVP  RG+E
Sbjct: 122 NGNQVVATESVHIMEDITQP--------RRDSSVTAWVNIIYGCNERCTYCVVPNVRGVE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC------TFSDLLYSLSE 256
            SR+   +  E  +L   G  EITLLGQN++A+ G+ L G          F+DLLY + +
Sbjct: 174 QSRTPEAIRAEMEELGRQGYKEITLLGQNIDAY-GRDLPGTTPEGRHLHNFTDLLYYVHD 232

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           I G+ RLR+ TSHPR  ++ LIKA  +L  +  + H+P QSG + +LK+M+R +T  +YR
Sbjct: 233 IPGIERLRFATSHPRYFTERLIKACAELPKVCEHFHIPFQSGDNELLKAMSRGYTHEKYR 292

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
           +IID IR   PD +IS D IVGFPGET+  F  T+ LV+ IG+    +  YSPR GTP +
Sbjct: 293 RIIDTIRRYMPDASISGDAIVGFPGETEAQFENTLKLVEDIGFDLLNTAAYSPRPGTPAA 352

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSPWL 435
               Q+ E VK++RL  L   +  +    +   +G+I +VL+E ++ K+  +++GR+   
Sbjct: 353 LWSNQLSEEVKSDRLQRLNHLVNVKASERSQRYMGRIEDVLVEDQNSKDPTQVMGRTGGN 412

Query: 436 QSVVLNSKNHNI-GDIIKVRITDVKISTLYGELV 468
           +          + G I+KV+IT+V+  +L GE V
Sbjct: 413 RLTFFTGDISQLKGQIVKVKITEVRAFSLTGEPV 446


>gi|256827172|ref|YP_003151131.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
           [Cryptobacterium curtum DSM 15641]
 gi|256583315|gb|ACU94449.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
           [Cryptobacterium curtum DSM 15641]
          Length = 448

 Score =  306 bits (783), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 179/458 (39%), Positives = 264/458 (57%), Gaps = 35/458 (7%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           F + ++GCQMN +DS R+  +  S G   V+S  +AD  +  TC +REKA E++   +G+
Sbjct: 7   FSITTFGCQMNKHDSERIAGLLESLGSIAVSSPAEADFSIFMTCCVREKADERL---MGQ 63

Query: 87  IRNLKNSRIKEG---GDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +  +KN   ++G   G   V + GC+ Q +GE++L +   V+VV G      LP+LLE A
Sbjct: 64  VATMKNDAPRKGSPFGRRFVAIGGCIGQRDGEKLLTQLDNVDVVFGTHNMETLPQLLESA 123

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDG--------GYNRKRGVTAFLTIQEGCDKFCTFCVV 195
                       +E    R  I+DG          +R+    A+L I  GC+ FCTFC+V
Sbjct: 124 ------------IEKGSRRAEIIDGRAEFHDELPEDREHPWAAWLPITVGCNNFCTFCIV 171

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
           PY RG EISR L ++ D+AR  +  GV EITLLGQNVN++ G+ L G    F  +L +++
Sbjct: 172 PYVRGREISRPLDEIADQARAYVQQGVKEITLLGQNVNSY-GRDLYGSP-RFDAVLDAVA 229

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
              G+ R+R+ TSHP+D++D +I+    L  LMP LHLP QSGS+RIL +MNRR+T   Y
Sbjct: 230 -ASGIERIRFATSHPKDLTDGVIERFATLPNLMPALHLPAQSGSNRILAAMNRRYTIEHY 288

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
             +I+++R VRP IA+S+D IVGFPGET+DDF  T +LV ++GY Q F+F YS R GTP 
Sbjct: 289 EGLIEKLRVVRPYIALSTDIIVGFPGETEDDFEQTCELVKRVGYNQVFTFIYSRRDGTPA 348

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GRSPW 434
           + + +    +V  ER   L   +RE  ++ N   + + + VLIE   K    ++ G+SP+
Sbjct: 349 ARLPDDTPRSVIQERFDRLVSIVREGALARNRLSLDRTMPVLIEGISKRNASMMAGKSPY 408

Query: 435 LQSVVL-----NSKNHNIGDIIKVRITDVKISTLYGEL 467
            Q+V L      S     G I+   I + +   L G +
Sbjct: 409 NQTVHLPLPAGTSLQQWEGTIVTAHIEEARTWYLRGSM 446


>gi|126699594|ref|YP_001088491.1| putative radical SAM protein [Clostridium difficile 630]
 gi|254975583|ref|ZP_05272055.1| putative radical SAM protein [Clostridium difficile QCD-66c26]
 gi|255092971|ref|ZP_05322449.1| putative radical SAM protein [Clostridium difficile CIP 107932]
 gi|255101116|ref|ZP_05330093.1| putative radical SAM protein [Clostridium difficile QCD-63q42]
 gi|255306984|ref|ZP_05351155.1| putative radical SAM protein [Clostridium difficile ATCC 43255]
 gi|255314712|ref|ZP_05356295.1| putative radical SAM protein [Clostridium difficile QCD-76w55]
 gi|255517386|ref|ZP_05385062.1| putative radical SAM protein [Clostridium difficile QCD-97b34]
 gi|255650493|ref|ZP_05397395.1| putative radical SAM protein [Clostridium difficile QCD-37x79]
 gi|306520455|ref|ZP_07406802.1| putative radical SAM protein [Clostridium difficile QCD-32g58]
 gi|123363359|sp|Q187U6|MIAB_CLOD6 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|115251031|emb|CAJ68861.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           (tRNA-i(6)A37 methylthiotransferase) [Clostridium
           difficile]
          Length = 478

 Score =  306 bits (783), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 171/447 (38%), Positives = 275/447 (61%), Gaps = 18/447 (4%)

Query: 28  FVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRI 87
           F +++GCQMN +DS ++  M    GY+    ++++DLI+ NTC +RE A  KVY  LG++
Sbjct: 42  FTQTFGCQMNEHDSEKLCSMLEEMGYQMSMMVEESDLIIYNTCAVRENAELKVYGNLGQL 101

Query: 88  RNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELL-ERAR 144
           ++LK     +  D+ + V GC+ Q     EE+ ++   V+++ G    Y+ P+LL E   
Sbjct: 102 KHLKG----KNPDMKIAVCGCMMQQPHVVEELRKKYKHVDLIFGTHNLYKFPQLLTESIN 157

Query: 145 FGKRVVDTDYSVEDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             K +VD  + V+ +     +++G   NRK  + AF+ I  GC+ FCT+C+VPYTRG E 
Sbjct: 158 SDKMLVDV-WDVDGE-----VIEGLRSNRKFELKAFVNIMYGCNNFCTYCIVPYTRGRER 211

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR+   +++E ++L+ NG  EITLLGQNV+++ GK L+    +FS+LL  +++I+G+ R+
Sbjct: 212 SRTPEDIINEIKELVANGTKEITLLGQNVDSY-GKTLEN-PVSFSELLRKVNDIEGIERV 269

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+ TSHP+D+SD +I A  D D +  +LHLP+Q GS  +LK MNR +T   Y +II++ +
Sbjct: 270 RFMTSHPKDISDEVIYAIRDCDKVCEFLHLPIQCGSSSLLKKMNRHYTKEYYLEIIEKAK 329

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              P IA S+D ++GFPGET++D   T+D+V+K+ Y  AF+F YS R GTP + M  Q+ 
Sbjct: 330 KEVPGIAFSTDLMIGFPGETEEDLLDTLDVVEKVRYDSAFTFIYSKRQGTPAAKMENQIP 389

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVLNS 442
           E++K +R   + + +       ND    +I+EVL+E   K  + K  GR+   + V    
Sbjct: 390 EDIKHDRFNRVLEAVNRISAEINDGYKDRIVEVLVEGRSKNNENKFAGRTRQNKLVNFEG 449

Query: 443 KNHN-IGDIIKVRITDVKISTLYGELV 468
            N + IG ++ V+IT+ +  +L G LV
Sbjct: 450 GNDDLIGKLVMVKITEPRTFSLNGILV 476


>gi|15842271|ref|NP_337308.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Mycobacterium
           tuberculosis CDC1551]
 gi|13882563|gb|AAK47122.1| conserved hypothetical protein [Mycobacterium tuberculosis CDC1551]
          Length = 512

 Score =  306 bits (783), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 171/462 (37%), Positives = 268/462 (58%), Gaps = 27/462 (5%)

Query: 23  VPQRFF-VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
            P R + V++YGCQMNV+DS R+  +  + GY R     +AD++V NTC +RE A  ++Y
Sbjct: 22  APARTYQVRTYGCQMNVHDSERLAGLLEAAGYRRATDGSEADVVVFNTCAVRENADNRLY 81

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             L  +      R +   D+ + V GC+AQ + + +L R+P V+VV G      LP LLE
Sbjct: 82  GNLSHL----APRKRANPDMQIAVGGCLAQKDRDAVLXRAPWVDVVFGTHNIGSLPTLLE 137

Query: 142 RARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           RAR  K   V+   +++     L       +R+    A+++I  GC+  CTFC+VP  RG
Sbjct: 138 RARHNKVAQVEIAEALQQFPSSLP-----SSRESAYAAWVSISVGCNNSCTFCIVPSLRG 192

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW----RGKGLDGEKCTFSDLLYSLSE 256
            E+ RS + ++ E R L+++GV E+TLLGQNVNA+        L   +  F++LL +  +
Sbjct: 193 REVDRSPADILAEVRSLVNDGVLEVTLLGQNVNAYGVSFADPALPRNRGAFAELLRACGD 252

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           I GL R+R+T+ HP + +D +I+A      + P LH+P+QSGSDRIL++M R + A  Y 
Sbjct: 253 IDGLERVRFTSPHPAEFTDDVIEAMAQTRNVCPALHMPLQSGSDRILRAMRRSYRAERYL 312

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
            II+R+R+  P  AI++D IVGFPGET++DF AT+D+V +  +A AF+F+YS R GTP +
Sbjct: 313 GIIERVRAAIPHAAITTDLIVGFPGETEEDFAATLDVVRRARFAAAFTFQYSKRPGTPAA 372

Query: 377 NMLEQVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK----GKLV 429
            +  Q+ + V   + ERL+ LQ+++    +  N A VGQ +EVL+      K     ++ 
Sbjct: 373 QLDGQLPKAVVQERYERLIALQEQI---SLEANRALVGQAVEVLVATGEGRKDTVTARMS 429

Query: 430 GRSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELVV 469
           GR+   + V   +    +  GD+I  ++T+     L  +  V
Sbjct: 430 GRARDGRLVHFTAGQPRVRPGDVITTKVTEAAPHHLIADAGV 471


>gi|113474257|ref|YP_720318.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Trichodesmium
           erythraeum IMS101]
 gi|123057124|sp|Q119H9|MIAB_TRIEI RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|110165305|gb|ABG49845.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Trichodesmium erythraeum
           IMS101]
          Length = 451

 Score =  305 bits (782), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 177/453 (39%), Positives = 274/453 (60%), Gaps = 23/453 (5%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + + + ++GCQMN  DS RM  +  + G       + AD+I+ NTC IR+ A +KVYS+L
Sbjct: 6   RHYHITTFGCQMNKADSERMAGILDNMGLISSEDPNKADIILYNTCTIRDNAEQKVYSYL 65

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR    +  R  +  DL ++VAGCVAQ EG  +LRR P +++++GPQ   RL +LLE+  
Sbjct: 66  GR----QAKRKHKQPDLTLIVAGCVAQQEGAALLRRVPELDLIMGPQHANRLQDLLEQVF 121

Query: 145 FGKRVVDTD--YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            G +VV T+  + VED  +          R   +TA++ I  GC++ CT+CVVP  RG+E
Sbjct: 122 NGNQVVATEPIHIVEDITKP--------RRDSKITAWVNIIYGCNEHCTYCVVPSVRGVE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG------EKCTFSDLLYSLSE 256
            SR+   +  E  +L   G  EITLLGQN++A+ G+ L G       K TF+DLLY + +
Sbjct: 174 QSRTPEAIRAEMEELGRQGYQEITLLGQNIDAY-GRDLPGVTKEGRNKYTFTDLLYYVHD 232

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           + G+ R+R+ TSHPR  ++ LI+A  +L  +  + H+P QSG +++LK+M R +T  +YR
Sbjct: 233 VPGVERIRFATSHPRYFTERLIRACAELPKVCEHFHIPFQSGDNKLLKAMARGYTHEKYR 292

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
           +IID+IR + PD +IS+D IVGFPGET+  F  T+ LV+ IG+ Q  +  YSPR GTP +
Sbjct: 293 RIIDKIRELMPDASISADAIVGFPGETEAQFENTLKLVEDIGFDQLNTAAYSPRPGTPAA 352

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWL 435
               Q+ E VK++RL  L   +  +    +   +G+I EVL+E  + K   +++GR+   
Sbjct: 353 LWENQLGEEVKSDRLQRLNHLVGVKAADRSQRYMGRIEEVLVEDMNPKNAAQVMGRTRGN 412

Query: 436 QSVVLNSKNHNI-GDIIKVRITDVKISTLYGEL 467
           +          + G ++KV+IT+V+  +L GE+
Sbjct: 413 RLTFFEGDIAQLKGKLVKVKITEVRPFSLTGEV 445


>gi|212696093|ref|ZP_03304221.1| hypothetical protein ANHYDRO_00629 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212676722|gb|EEB36329.1| hypothetical protein ANHYDRO_00629 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 450

 Score =  305 bits (782), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 171/449 (38%), Positives = 269/449 (59%), Gaps = 19/449 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +++ + ++GCQMN +DS R+  +    GY   +  ++AD I+ NTC +RE A  K+Y  +
Sbjct: 16  KKYNITTFGCQMNEHDSERISYILEDLGYTLTDDRNEADFILFNTCLVRENAELKLYGQV 75

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAE--GEEILRRSPIVNVVVGPQTYYRLPELL-E 141
             ++ LK    +E  + ++ V+GC+ Q     E I ++   V+++ G +    LP+LL +
Sbjct: 76  SSLKKLK----EENPEKIIAVSGCMMQTSVAREVIEKKHKEVDIIFGTKNINSLPDLLFK 131

Query: 142 RARFGKRVVD-TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
               G+RV+D ++ +V+D +         YN K    A++ I  GCD FC++C+VP +RG
Sbjct: 132 YLEAGERVIDVSEDNVKDDY-------VNYNSKNNFQAYVNIMTGCDNFCSYCIVPQSRG 184

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E SR  S +++E   L++NG  EITLLGQNVN++  K       TF +LL   ++I+GL
Sbjct: 185 REESRRPSHIIEEIENLVNNGYKEITLLGQNVNSYGNKS--DFNVTFPELLERCAQIEGL 242

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            RLR+TTSHP+D+SD LI+   + D +  Y HLP+QSGSD++LK MNR++   +Y +   
Sbjct: 243 ERLRFTTSHPKDLSDDLIRVIKENDNICNYFHLPMQSGSDKVLKDMNRKYNKEQYLEKAR 302

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R   P+IAIS+D IVG+P ET++DF+ T+D+  K+G+  AF+FKYSPR  T  +  LE
Sbjct: 303 KLREEIPNIAISTDIIVGYPTETEEDFQETLDVCRKVGFDTAFTFKYSPRPKTKAAK-LE 361

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVV 439
            +DE +  +R   L   L       N   VG++++VL+E   K  K  L GR+   + V 
Sbjct: 362 TIDEKIVQDRFDRLLDTLYPVFNEKNKEYVGKVVDVLLESESKNNKNVLTGRTDTFKLVH 421

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
           + +    IG I+KV+ITD    T+ G LV
Sbjct: 422 VEADKKLIGQIVKVKITDNTSFTISGHLV 450


>gi|120603047|ref|YP_967447.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Desulfovibrio
           vulgaris DP4]
 gi|120563276|gb|ABM29020.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Desulfovibrio vulgaris
           DP4]
          Length = 476

 Score =  305 bits (782), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 178/452 (39%), Positives = 259/452 (57%), Gaps = 26/452 (5%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           F ++++GCQMNV DS  +      +G+       +A L ++NTC +R+K  +KVYS LGR
Sbjct: 33  FHIETFGCQMNVNDSDWLARALMERGFSPA-PFGEARLTIVNTCSVRDKPEQKVYSLLGR 91

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER--AR 144
           IR     +     D  V V GCVAQ  G     R P V +V G       P+ L+R    
Sbjct: 92  IRQATGKKP----DAFVAVGGCVAQQIGSGFFSRFPQVRLVFGTDGLAMAPQALDRLVEE 147

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
              ++   D+S ED  ER +++  G       + F+ I +GCD FC +C+VPYTRG + S
Sbjct: 148 PDLKLSLLDFS-EDYPERDAVLGQG---AVPASVFVNIMQGCDNFCAYCIVPYTRGRQKS 203

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R+   ++DE R L+D G  EITLLGQNVN++ G+   G+  TF+ LL+ ++ + GL RLR
Sbjct: 204 RATGTILDECRALLDRGAREITLLGQNVNSF-GQDSHGDGTTFAQLLHKVAALPGLERLR 262

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           + T HP+D++  +++A G L  L P LHLP+Q+GSDRILK M RR+    Y +I+D +R+
Sbjct: 263 FVTPHPKDIAPEVVEAFGTLPNLCPRLHLPLQAGSDRILKLMGRRYDMARYLRIVDDLRA 322

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
            RPDI +SSD IVGFPGET++DF  TM  ++ +GYA ++SF YS R GT    + +++  
Sbjct: 323 ARPDIVLSSDIIVGFPGETEEDFMETMGALETVGYAASYSFCYSDRPGTRAEMLPDKLSR 382

Query: 385 NVKAERLLCLQKKLREQQVSFNDAC----VGQIIEVLIE----KHGKEKGKLVGRSPW-- 434
            VK ERL    ++L+  Q    + C    VG+ +EVL+E    K G E     GR P+  
Sbjct: 383 EVKLERL----ERLQTLQNRLTERCLQDMVGKKVEVLLEGMSRKPGDEGDSWQGRDPYGN 438

Query: 435 LQSVVLNSKNHNIGDIIKVRITDVKISTLYGE 466
           L +V L   +   G  + V +   K  +L  E
Sbjct: 439 LVNVALPQGSDVRGRFLPVVVAQAKKHSLLAE 470


>gi|297584113|ref|YP_003699893.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus selenitireducens
           MLS10]
 gi|297142570|gb|ADH99327.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus selenitireducens
           MLS10]
          Length = 516

 Score =  305 bits (782), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 173/448 (38%), Positives = 265/448 (59%), Gaps = 15/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++F +++YGCQMN +DS  M  +    G+E   + D+AD+I+LNTC IRE A  KV+  +
Sbjct: 72  KKFLIRTYGCQMNEHDSENMAGILLEMGFESTVNQDEADVILLNTCAIRENAENKVFGEI 131

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G ++ +K    +E   L+V V GC++Q E     IL++   V+++ G    +RLPEL++ 
Sbjct: 132 GNLKVMK----RENPGLIVGVCGCMSQEESVVNRILQKHQHVDLIFGTHNIHRLPELIKN 187

Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           A F K ++   +S E D  E +        RK     ++ I  GCDKFCT+C+VP+TRG 
Sbjct: 188 AIFSKEMIVEVWSQEGDIIENMPRA-----RKGQFQGWVNIMYGCDKFCTYCIVPFTRGK 242

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR    V++E R L  NG  EITLLGQNVNA+ GK L       +DLL  + +I G+ 
Sbjct: 243 ERSRRPEDVIEEVRHLARNGYKEITLLGQNVNAY-GKDLLDSSYRLADLLDDIRDI-GIP 300

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHP D  D LI        +M ++HLPVQSG++ +LK MNR++T  EY  + D+
Sbjct: 301 RVRFTTSHPWDFDDELIDVIAKGGNMMEHIHLPVQSGNNDVLKIMNRKYTREEYVALADK 360

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I+   P   +++D IVG+P ET++ F+ T+ LV ++ +  A+++ YS R GTP + M + 
Sbjct: 361 IKEKIPHATLTTDIIVGYPNETEEQFQDTLSLVKEMAFDAAYTYVYSAREGTPAAAMEDD 420

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440
           V + VK +RL  L + +       N+    + +EVL+E   K+    L+GR+   + V  
Sbjct: 421 VPKEVKKDRLQRLNEVVNRHSAMSNERMRDRTVEVLVEGESKKNPDVLMGRTRTNKLVNF 480

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
            +    IG+++ V+ITD K  +L GELV
Sbjct: 481 KAPKSVIGELVYVKITDAKSWSLNGELV 508


>gi|294102364|ref|YP_003554222.1| RNA modification enzyme, MiaB family [Aminobacterium colombiense
           DSM 12261]
 gi|293617344|gb|ADE57498.1| RNA modification enzyme, MiaB family [Aminobacterium colombiense
           DSM 12261]
          Length = 440

 Score =  305 bits (782), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 171/444 (38%), Positives = 256/444 (57%), Gaps = 11/444 (2%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           RF +K YGCQMNVYD  ++       G++   S ++AD+++ N C IR KA  KV+S LG
Sbjct: 3   RFILKVYGCQMNVYDGDKLRTALIRNGWQE-TSEEEADIVIFNGCSIRAKAEHKVWSELG 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R     + + K      V V GC+AQ  G  ++ R P V +V GP+    LPE LER   
Sbjct: 62  RYGESWSDKKKP----FVAVTGCIAQRLGSAMMTRFPWVRLVGGPRHIGDLPEALERVMA 117

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G+RV   D   ED    + +      R     A++TI  GCD FCT+C+VPY RG  +SR
Sbjct: 118 GERVSLLD---EDSRAFVDLAVPPIERVNPWKAYVTIAHGCDNFCTYCIVPYVRGRFVSR 174

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
               ++ E R L+++GV EITLLGQNVN++     +G   TFS LL  ++ I GL  +R+
Sbjct: 175 FPEDILVEIRGLVEDGVKEITLLGQNVNSYGQDFKNG--YTFSSLLRDVAAIDGLPLIRF 232

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
            TSHP+D +  +++       + P ++LP+QSGSDRILK MNR++T  +YR+ +  IR+ 
Sbjct: 233 VTSHPKDFTPDIVEVMAHHPKICPSINLPIQSGSDRILKKMNRKYTLAKYRETVSVIRNA 292

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P++ ++SD IVGFPGET++DF+A++  + +  Y    +  YSPR GT  S M +Q+D++
Sbjct: 293 LPEVGLTSDLIVGFPGETEEDFQASVAALHEFRYDLVHTAAYSPREGTAASTMEDQIDQD 352

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GRSPWLQSVVLNSKN 444
           VK +RL  +     E  +  N   VG+  ++LI+    +   LV GR+P  + V++    
Sbjct: 353 VKMKRLNTVNAVQSEIALQINRGLVGKRYKILIDDWAPKGESLVQGRTPGDKVVIMEGTE 412

Query: 445 HNIGDIIKVRITDVKISTLYGELV 468
             IG    V IT  +   L+GE++
Sbjct: 413 EFIGRFALVSITSAENWCLHGEVI 436


>gi|319900623|ref|YP_004160351.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacteroides helcogenes P
           36-108]
 gi|319415654|gb|ADV42765.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacteroides helcogenes P
           36-108]
          Length = 459

 Score =  305 bits (782), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 173/451 (38%), Positives = 269/451 (59%), Gaps = 20/451 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F+++YGCQMNV DS  +  +    GY    ++++AD + +NTC IR+ A +K+ + L
Sbjct: 18  KKLFIETYGCQMNVADSEVIASVMQMAGYSVAETLEEADAVFMNTCSIRDNAEQKILNRL 77

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
               +LK    K+   L+V V GC+A+   ++++     V++VVGP  Y  LPEL+    
Sbjct: 78  EFFHSLK----KKKRHLIVGVLGCMAERVKDDLITNHH-VDLVVGPDAYLTLPELIASVE 132

Query: 145 FGKRVVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            G++ ++ + S  + +  +  S + G +     ++ F++I  GC+ FCT+C+VPYTRG E
Sbjct: 133 AGEKAMNVELSTTETYRDVIPSRICGNH-----ISGFVSIMRGCNNFCTYCIVPYTRGRE 187

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR +  +++E   L+  G  E+TLLGQNVN++R +  DG   TF  LL  ++E    VR
Sbjct: 188 RSRDVESILNEVADLVAKGYKEVTLLGQNVNSYRFEKPDGGVVTFPILLRMVAEAAQGVR 247

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP+DMSD  ++   D+  +  ++HLPVQSGS RILK MNRR+T   Y + +  I
Sbjct: 248 IRFTTSHPKDMSDETLQVIADMPNVCKHIHLPVQSGSSRILKLMNRRYTREWYLERVAAI 307

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML-EQ 381
           R + PD  +S+D   GF  ET++D + ++ L+++ GY  AF FKYS R GT  S  L + 
Sbjct: 308 RRIIPDCGLSTDIFSGFHSETEEDHQLSLSLMEECGYDAAFMFKYSERPGTYASKHLPDD 367

Query: 382 VDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQS 437
           V E VK  RL   + LQ +L  +    N  CVG++ EVL+E   K  + +L GR+   + 
Sbjct: 368 VPEEVKIRRLNEIIALQNRLSAEA---NARCVGRMYEVLVEGVSKRSRNQLFGRTEQNRV 424

Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           VV +   H IGD + VR+T+   +TL GE V
Sbjct: 425 VVFDRGTHRIGDFVTVRVTESSSATLKGEEV 455


>gi|330686356|gb|EGG97959.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
           epidermidis VCU121]
          Length = 514

 Score =  305 bits (782), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 171/446 (38%), Positives = 265/446 (59%), Gaps = 15/446 (3%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           F +K+YGCQMN +D+  M  +  + GY     ++ AD+I++NTC IRE A  KV+S +G 
Sbjct: 70  FLIKTYGCQMNAHDTEVMAGILEALGYSATTDINTADVILINTCAIRENAENKVFSEIGN 129

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           +++LK    KE  D L+ V GC++Q E    +IL+    V+++ G    +RLPE+LE A 
Sbjct: 130 LKHLK----KERPDCLIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHRLPEILEEAY 185

Query: 145 FGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             K +V   +S E D  E L  V  G+     + A++ I  GCDKFCT+C+VP+TRG E 
Sbjct: 186 LSKAMVVEVWSKEGDVIENLPKVRDGH-----IKAWVNIMYGCDKFCTYCIVPFTRGKER 240

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR    ++DE R+L   G  EITLLGQNVN++ GK ++G      DLL  +S+I  + R+
Sbjct: 241 SRRPEDIIDEVRELAREGYQEITLLGQNVNSY-GKDIEGLDYGLGDLLEDISKID-IPRV 298

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+TTSHP D +D +I+   +   ++P++HLPVQSG++ +LK M R++T   Y  ++ RI+
Sbjct: 299 RFTTSHPWDFTDRMIEVIANGGNIVPHIHLPVQSGNNAVLKIMGRKYTRESYLDLVSRIK 358

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              P+IA+++D IVG+P ET++ F  T+ L D++G+  A+++ YS R GTP + M + V 
Sbjct: 359 EAIPNIALTTDIIVGYPNETEEQFEDTLTLYDEVGFEHAYTYLYSQRDGTPAAKMKDNVP 418

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVLNS 442
            +VK ERL  L KK+ E           +I+ VL E   K+    L G +   + V   +
Sbjct: 419 TDVKKERLQRLNKKVGEYSQKAMSQYENEIVTVLCEGSSKKDDTVLAGYTSKNKLVNFKA 478

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
               +G ++ V+I + K  +L G  +
Sbjct: 479 PKEMVGKLVDVKIDEAKQYSLNGTFI 504


>gi|86143888|ref|ZP_01062256.1| hypothetical protein MED217_03540 [Leeuwenhoekiella blandensis
           MED217]
 gi|85829595|gb|EAQ48058.1| hypothetical protein MED217_03540 [Leeuwenhoekiella blandensis
           MED217]
          Length = 481

 Score =  305 bits (782), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 180/464 (38%), Positives = 262/464 (56%), Gaps = 22/464 (4%)

Query: 20  QCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEK 79
           Q    ++ F++SYGCQMN  DS  +  +   +GY     ++DADL+++NTC IR+KA + 
Sbjct: 19  QAANSKKLFIESYGCQMNFSDSEIVASILAKEGYNTTQQLEDADLVLVNTCSIRDKAEQT 78

Query: 80  VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL 139
           V   L +   +K    K+   + V V GC+A+    + L    IV++VVGP  Y  LP L
Sbjct: 79  VRKRLEKYNAVK----KDNPTMKVGVLGCMAERLKSKFLEEEKIVDLVVGPDAYKDLPNL 134

Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           L     G+  ++   S E+ +  ++ V    N   GVTAF++I  GCD  CTFCVVP+TR
Sbjct: 135 LGEVEEGRDAINVILSKEETYGDIAPVRLQSN---GVTAFVSITRGCDNMCTFCVVPFTR 191

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA--WRGKGL--DGEKCT--------- 246
           G E SR    +V+E   L   G  E+TLLGQNV++  W G GL  D EK +         
Sbjct: 192 GRERSRDPQSIVEEVNDLAAKGFKEVTLLGQNVDSYLWYGGGLKKDFEKASDMAKATAVN 251

Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306
           F+ LL  ++E +  +R+R++TS+P+DM+  +I+       +  Y+HLPVQSGSDRILK M
Sbjct: 252 FAGLLSLVAEAQPKMRIRFSTSNPQDMTLDVIRTMAKYPNICKYIHLPVQSGSDRILKEM 311

Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
           NR HT  EY ++ID IR + PD AIS D I GFP ET++D + T+ L++ + Y   F F 
Sbjct: 312 NRLHTRQEYFELIDNIREIMPDCAISQDMITGFPTETEEDHQDTLSLMEYVKYDFGFMFA 371

Query: 367 YSPRLGTPGSNMLE-QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK 425
           YS R GT  +  LE  +  +VK  RL  +    +E  +      VG+ +EVLIEK  K+ 
Sbjct: 372 YSERPGTLAARKLEDDIPLDVKKRRLAEVIALQQEHSLYNTQKQVGKTVEVLIEKASKKS 431

Query: 426 -GKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
             +  GR+     VV   +++ +GD + V I D   +TL G+ V
Sbjct: 432 DAEWAGRNSQNTVVVFPKEHYKVGDFVNVEILDCTSTTLLGKAV 475


>gi|229890688|sp|A1VF04|MIAB_DESVV RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
          Length = 449

 Score =  305 bits (782), Expect = 9e-81,   Method: Compositional matrix adjust.
 Identities = 178/452 (39%), Positives = 259/452 (57%), Gaps = 26/452 (5%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           F ++++GCQMNV DS  +      +G+       +A L ++NTC +R+K  +KVYS LGR
Sbjct: 6   FHIETFGCQMNVNDSDWLARALMERGFSPA-PFGEARLTIVNTCSVRDKPEQKVYSLLGR 64

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER--AR 144
           IR     +     D  V V GCVAQ  G     R P V +V G       P+ L+R    
Sbjct: 65  IRQATGKKP----DAFVAVGGCVAQQIGSGFFSRFPQVRLVFGTDGLAMAPQALDRLVEE 120

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
              ++   D+S ED  ER +++  G       + F+ I +GCD FC +C+VPYTRG + S
Sbjct: 121 PDLKLSLLDFS-EDYPERDAVLGQG---AVPASVFVNIMQGCDNFCAYCIVPYTRGRQKS 176

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R+   ++DE R L+D G  EITLLGQNVN++ G+   G+  TF+ LL+ ++ + GL RLR
Sbjct: 177 RATGTILDECRALLDRGAREITLLGQNVNSF-GQDSHGDGTTFAQLLHKVAALPGLERLR 235

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           + T HP+D++  +++A G L  L P LHLP+Q+GSDRILK M RR+    Y +I+D +R+
Sbjct: 236 FVTPHPKDIAPEVVEAFGTLPNLCPRLHLPLQAGSDRILKLMGRRYDMARYLRIVDDLRA 295

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
            RPDI +SSD IVGFPGET++DF  TM  ++ +GYA ++SF YS R GT    + +++  
Sbjct: 296 ARPDIVLSSDIIVGFPGETEEDFMETMGALETVGYAASYSFCYSDRPGTRAEMLPDKLSR 355

Query: 385 NVKAERLLCLQKKLREQQVSFNDAC----VGQIIEVLIE----KHGKEKGKLVGRSPW-- 434
            VK ERL    ++L+  Q    + C    VG+ +EVL+E    K G E     GR P+  
Sbjct: 356 EVKLERL----ERLQTLQNRLTERCLQDMVGKKVEVLLEGMSRKPGDEGDSWQGRDPYGN 411

Query: 435 LQSVVLNSKNHNIGDIIKVRITDVKISTLYGE 466
           L +V L   +   G  + V +   K  +L  E
Sbjct: 412 LVNVALPQGSDVRGRFLPVVVAQAKKHSLLAE 443


>gi|167763971|ref|ZP_02436098.1| hypothetical protein BACSTE_02354 [Bacteroides stercoris ATCC
           43183]
 gi|167698087|gb|EDS14666.1| hypothetical protein BACSTE_02354 [Bacteroides stercoris ATCC
           43183]
          Length = 455

 Score =  305 bits (781), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 170/451 (37%), Positives = 272/451 (60%), Gaps = 20/451 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F+++YGCQMNV DS  +  +    GY   +++++AD + +NTC IR+ A +K+ + L
Sbjct: 18  RKLFIETYGCQMNVADSEVIASVMQMAGYSVADTLEEADAVFMNTCSIRDNAEQKILNRL 77

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
               +LK    K+  +L+V V GC+A+   ++++     V++VVGP  Y  LP+L+    
Sbjct: 78  EFFHSLK----KKKKNLIVGVLGCMAERVKDDLITNHH-VDLVVGPDAYLSLPDLIAAVE 132

Query: 145 FGKRVVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            G++ ++ + S  + +  +  S + G +     ++ F++I  GC+ FCT+C+VPYTRG E
Sbjct: 133 AGEKAINVELSTTETYRDVIPSRICGNH-----ISGFVSIMRGCNNFCTYCIVPYTRGRE 187

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR +  +++E   L+  G  E+TLLGQNVN++R +  DGE  TF  LL +++E    VR
Sbjct: 188 RSRDVESILNEVADLVAKGYKEVTLLGQNVNSYRFEKADGEVVTFPMLLRTVAESAPGVR 247

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP+DMSD  ++   ++  +  ++HLPVQSGS RILK MNR++T   Y + +D I
Sbjct: 248 IRFTTSHPKDMSDETLQVIAEVPNVCKHIHLPVQSGSSRILKLMNRKYTREWYLERVDAI 307

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML-EQ 381
           R +  D  +S+D   GF  ET++D R ++ L+++ GY  AF FKYS R GT  S  L + 
Sbjct: 308 RRIISDCGLSTDIFSGFHSETEEDHRLSLSLMEECGYDAAFMFKYSERPGTYASKHLPDD 367

Query: 382 VDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQS 437
           V E VK  RL   + LQ +L  +    N  C+G+  EVL+E   K  + +L GR+   + 
Sbjct: 368 VPEEVKIRRLNEIIALQNRLSAEA---NARCMGKTYEVLVEGVSKRSRDQLFGRTEQNRV 424

Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           VV +   H +GD + V+IT+   +TL GE V
Sbjct: 425 VVFDRGTHRVGDFVNVKITESSSATLKGEEV 455


>gi|213964685|ref|ZP_03392885.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Corynebacterium
           amycolatum SK46]
 gi|213952878|gb|EEB64260.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Corynebacterium
           amycolatum SK46]
          Length = 515

 Score =  305 bits (781), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 163/454 (35%), Positives = 266/454 (58%), Gaps = 31/454 (6%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+ + V+++GCQMNV+DS R+  +    GY      ++ DL+V NTC +RE A  ++Y  
Sbjct: 14  PRTYEVRTFGCQMNVHDSERLSGLLEENGYVAAAEGENPDLVVFNTCAVRENADNRLYGT 73

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LG+++ +K++       + + V GC+AQ + + +++++P V+VV G      LP LLERA
Sbjct: 74  LGQLKPVKDAHP----GMQIAVGGCLAQKDKDVVVKKAPWVDVVFGTHNLGSLPALLERA 129

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
               R    +  ++D  E    V     R+     +++I  GC+  CTFC+VP  RG E 
Sbjct: 130 AHNDRA---EVEIKDALEEFPSVLPA-KRESTYAGWVSISVGCNNTCTFCIVPSLRGKER 185

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAW----RGKGLDGEKCTFSDLLYSLSEIKG 259
            R   +++ E + L++ GV ++TLLGQNVNA+        ++ ++  FS LL +  +I+G
Sbjct: 186 DRRPGEILAEVQALVEQGVTDVTLLGQNVNAYGVNFADPDMERDRSAFSKLLRACGQIEG 245

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           L R+R+T+ HP + +D +I A  +   ++  LH+P+QSGSDR+LK M R +   ++  I+
Sbjct: 246 LERVRFTSPHPAEFTDDVIDAMAETPNVVHQLHMPLQSGSDRVLKDMRRSYRTKKFLGIL 305

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
           D++R   PD AI++D IVGFPGET++DF+AT+D+V+K  ++ AF+F+YSPR GTP + M 
Sbjct: 306 DKVREKMPDAAITTDIIVGFPGETEEDFQATLDVVEKARFSSAFTFQYSPRPGTPAATMP 365

Query: 380 EQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK----------- 425
           +QV   V  E   RLL LQ+++ E++   N   VG+ +E+L+ +    K           
Sbjct: 366 DQVPPEVVKERYGRLLALQERISEEE---NAKLVGREVELLVSQSDGRKNAETHRMSGRS 422

Query: 426 --GKLVGRSPWLQSVVLNSKNHNIGDIIKVRITD 457
             G+LV  SP      +  +    GD + VR+TD
Sbjct: 423 RDGRLVHFSPSESEPGVVDRKIRPGDYVTVRVTD 456


>gi|186681269|ref|YP_001864465.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Nostoc
           punctiforme PCC 73102]
 gi|229890579|sp|B2IT24|MIAB_NOSP7 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|186463721|gb|ACC79522.1| RNA modification enzyme, MiaB family [Nostoc punctiforme PCC 73102]
          Length = 454

 Score =  305 bits (781), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 180/454 (39%), Positives = 273/454 (60%), Gaps = 23/454 (5%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + + + ++GCQMN  DS RM  +    G+E     ++AD+I+ NTC IR+ A +KVYS+L
Sbjct: 6   RHYHITTFGCQMNKADSERMAGVLEDMGFEWSEDPNNADVILYNTCTIRDNAEQKVYSYL 65

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR    +  R  +  DL ++VAGCVAQ EGE +LRR P +++V+GPQ   RL +LLE   
Sbjct: 66  GR----QAKRKHDQPDLTLIVAGCVAQQEGEALLRRVPELDLVMGPQHANRLKDLLESVF 121

Query: 145 FGKRVVDTD--YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            G +VV T+  + +ED  +          R   VTA++ +  GC++ CT+CVVP  RGIE
Sbjct: 122 DGNQVVATESVHIIEDITQP--------RRDSKVTAWVNVIYGCNERCTYCVVPNVRGIE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC------TFSDLLYSLSE 256
            SR+ S +  E  +L   G  EITLLGQN++A+ G+ L G          F+DLLY + +
Sbjct: 174 QSRTPSAIRAEMEELGRQGYKEITLLGQNIDAY-GRDLPGTTPEGRHLHNFTDLLYYVHD 232

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           + G+ RLR+ TSHPR  ++ LIKA  +L  +  + H+P QSG + +LK+M R +T  +YR
Sbjct: 233 VPGIERLRFATSHPRYFTERLIKACAELPKVCKHFHIPFQSGDNELLKAMARGYTHEKYR 292

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
           +IID IR   PD +IS+D IVGFPGET+  F  T+ LV+ IG+    +  YSPR GTP +
Sbjct: 293 RIIDTIRRYMPDASISADAIVGFPGETEAQFENTLKLVEDIGFDMLNTAAYSPRPGTPAA 352

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSPWL 435
               Q+ E VK++RL  L      +    +    G+I EVL+E ++ K++ +++GR+   
Sbjct: 353 LWDNQLSEEVKSDRLQRLNHLGNLKVAERSQRYFGRIEEVLVEDQNPKDQTQVMGRTDGN 412

Query: 436 QSVVLNSKNHNI-GDIIKVRITDVKISTLYGELV 468
           +    +     + G ++KV+IT+V+  +L G+ V
Sbjct: 413 RLTFFSGDIKELKGQLVKVKITEVRPFSLTGQPV 446


>gi|260206040|ref|ZP_05773531.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Mycobacterium
           tuberculosis K85]
 gi|289575430|ref|ZP_06455657.1| conserved alanine and arginine rich protein [Mycobacterium
           tuberculosis K85]
 gi|289539861|gb|EFD44439.1| conserved alanine and arginine rich protein [Mycobacterium
           tuberculosis K85]
          Length = 512

 Score =  305 bits (781), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 171/462 (37%), Positives = 268/462 (58%), Gaps = 27/462 (5%)

Query: 23  VPQRFF-VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
            P R + V++YGCQMNV+DS R+  +  + GY R     +AD++V NTC +RE A  ++Y
Sbjct: 22  APARTYQVRTYGCQMNVHDSERLAGLLEAAGYRRATDGSEADVVVFNTCAVRENADNRLY 81

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             L  +      R +   D+ + V GC+AQ + + +LRR+P V+VV G      LP LLE
Sbjct: 82  GNLSHL----APRKRANPDMQIAVGGCLAQKDRDAVLRRAPWVDVVFGTHNIGSLPTLLE 137

Query: 142 RARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           RAR  K   V+   +++     L       +R+    A+++I  GC+  CTFC+VP  RG
Sbjct: 138 RARHNKVAQVEIAEALQQFPSSLP-----SSRESAYAAWVSISVGCNNSCTFCIVPSLRG 192

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW----RGKGLDGEKCTFSDLLYSLSE 256
            E+ RS + ++ E R L+++GV E+TLLGQNVNA+        L   +  F++LL +  +
Sbjct: 193 REVDRSPADILAEVRSLVNDGVLEVTLLGQNVNAYGVSFADPALPRNRGAFAELLRACGD 252

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           I GL R+R+T+ HP + +D +I+A      + P LH+P+QSGSDRIL++M R + A  Y 
Sbjct: 253 IDGLERVRFTSPHPAEFTDDVIEAMAQTRNVCPALHMPLQSGSDRILRAMRRSYRAERYL 312

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
            II+R+R+  P  AI++D IVGFP ET++DF AT+D+V +  +A AF+F+YS R GTP +
Sbjct: 313 GIIERVRAAIPHAAITTDLIVGFPWETEEDFAATLDVVRRARFAAAFTFQYSKRPGTPAA 372

Query: 377 NMLEQVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK----GKLV 429
            +  Q+ + V   + ERL+ LQ+++    +  N A VGQ +EVL+      K     ++ 
Sbjct: 373 QLDGQLPKAVVQERYERLIALQEQI---SLEANRALVGQAVEVLVATGEGRKDTVTARMS 429

Query: 430 GRSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELVV 469
           GR+   + V   +    +  GD+I  ++T+     L  +  V
Sbjct: 430 GRARDGRLVHFTAGQPRVRPGDVITTKVTEAAPHHLIADAGV 471


>gi|239636980|ref|ZP_04677974.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus warneri
           L37603]
 gi|239597330|gb|EEQ79833.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus warneri
           L37603]
          Length = 514

 Score =  305 bits (781), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 171/446 (38%), Positives = 264/446 (59%), Gaps = 15/446 (3%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           F +K+YGCQMN +D+  M  +  + GY     ++ AD+I++NTC IRE A  KV+S +G 
Sbjct: 70  FLIKTYGCQMNAHDTEVMAGILEALGYSATTDINTADVILINTCAIRENAENKVFSEIGN 129

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           +++LK    KE  D L+ V GC++Q E    +IL+    V+++ G    +RLPE+LE A 
Sbjct: 130 LKHLK----KERPDCLIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHRLPEILEEAY 185

Query: 145 FGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             K +V   +S E D  E L  V  G+     + A++ I  GCDKFCT+C+VP+TRG E 
Sbjct: 186 LSKAMVVEVWSKEGDVIENLPKVRDGH-----IKAWVNIMYGCDKFCTYCIVPFTRGKER 240

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR    ++DE R+L   G  EITLLGQNVN++ GK ++G      DLL  +S+I  + R+
Sbjct: 241 SRRPEDIIDEVRELAREGYQEITLLGQNVNSY-GKDIEGLDYGLGDLLEDISKID-IPRV 298

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+TTSHP D +D +I+   +   ++P++HLPVQSG++ +LK M R++T   Y  ++ RI+
Sbjct: 299 RFTTSHPWDFTDRMIEVIANGGNIVPHIHLPVQSGNNAVLKIMGRKYTRESYLDLVSRIK 358

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              P+IA+++D IVG+P ET++ F  T+ L D++G+  A+++ YS R GTP + M + V 
Sbjct: 359 EAIPNIALTTDIIVGYPNETEEQFEDTLTLYDEVGFEHAYTYLYSQRDGTPAAKMKDNVP 418

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVLNS 442
             VK ERL  L KK+ E           +I+ VL E   K+    L G +   + V   +
Sbjct: 419 TEVKKERLQRLNKKVGEYSQKAMSQYENEIVTVLCEGSSKKDDSVLAGYTSKNKLVNFKA 478

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
               +G ++ V+I + K  +L G  +
Sbjct: 479 PKEMVGKLVDVKIDEAKQYSLNGTFI 504


>gi|225163478|ref|ZP_03725792.1| 2-alkenal reductase [Opitutaceae bacterium TAV2]
 gi|224801895|gb|EEG20177.1| 2-alkenal reductase [Opitutaceae bacterium TAV2]
          Length = 494

 Score =  305 bits (781), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 177/474 (37%), Positives = 262/474 (55%), Gaps = 39/474 (8%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R ++K+YGCQMN  DS  +  M  ++GY  VN+ DD D+++LNTC +R+ A +K    LG
Sbjct: 3   RVYIKTYGCQMNERDSNAVAAMLRARGYRIVNTEDDCDIMLLNTCSVRDAAEQKA---LG 59

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           +   + + R K   D ++ + GC+AQ  G EIL + P V++++G Q ++++P  LE  R 
Sbjct: 60  KASYM-SQRKKRNPDFVLGILGCMAQNRGAEILEKLPDVDLIIGTQKFHQVPGYLENLRA 118

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRG------------------------------ 175
            +   D    V +    ++   G  N  R                               
Sbjct: 119 AR---DAGLPVGETIIDIAEEPGSQNTIRDHYFPPAPPASSAISAASDNSPLPPPPPAPQ 175

Query: 176 VTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW 235
           VTA+++IQ+GC+  C FC+VP TRG E SR +  +V E R L D G+ EITLLGQ V ++
Sbjct: 176 VTAYVSIQQGCNMDCAFCIVPKTRGDERSRPMDDIVAECRALADRGIREITLLGQIVTSY 235

Query: 236 --RGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHL 293
             R     G    F  L+  +  I+G+ R+R+T+ HPR     L+ A+  L  L  Y+HL
Sbjct: 236 GRRDYEHTGGITPFVQLIEKVHAIEGIDRIRFTSPHPRGFKQDLVDAYARLPKLCEYVHL 295

Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
           P+QSGSDRIL++M+R ++   YRQI+  +R+ RPD+  S+D IVGFPGETD +F  T  L
Sbjct: 296 PMQSGSDRILRAMHRPYSRDRYRQIVQSLRAARPDMYFSTDIIVGFPGETDAEFEDTRTL 355

Query: 354 VDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQI 413
            ++  Y  A+ FKYS R GTP + M +Q+ E+VK  R   L + LR      N A +G I
Sbjct: 356 FEECNYDMAYIFKYSVRTGTPAAVMGDQIPEDVKEHRNQVLLEILRRNSERRNAALLGTI 415

Query: 414 IEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
            EVL+E   K   +  GR+   +  + ++    IG ++ +RI    ISTLYGEL
Sbjct: 416 EEVLVEGPDKTGQRYTGRTRGNRVTIFDASPRLIGQLVPLRIQRASISTLYGEL 469


>gi|327398199|ref|YP_004339068.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Hippea
           maritima DSM 10411]
 gi|327180828|gb|AEA33009.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Hippea
           maritima DSM 10411]
          Length = 421

 Score =  305 bits (780), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 178/456 (39%), Positives = 271/456 (59%), Gaps = 51/456 (11%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           F++K++GCQMN  DS ++  +    G++  + +  A+L+++N+C +REKA  K+YS +GR
Sbjct: 3   FYIKTFGCQMNERDSEKVIGILTQNGWKMTDDIKSANLVIVNSCAVREKAENKIYSEIGR 62

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT---YYRLPELLERA 143
           +R  KN       +  VV  GCVAQ   E++ R   + ++VVG  T   +Y++ +  ++ 
Sbjct: 63  LR-FKNK------NATVVAMGCVAQINYEKLSR---VADIVVGTNTIDEFYKIAKTPQKG 112

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            F K             ER+   D  +    GV+AF+ I  GC+ FCT+C+VPYTRG EI
Sbjct: 113 AFIK-------------ERMDNPDYIFPHVEGVSAFVDIMYGCNNFCTYCIVPYTRGREI 159

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR    +++E ++L D G  E+ LLGQNVN++ GKGL+     F DLLY +++I GL R+
Sbjct: 160 SRKKEAIIEEIKRLTDKGTKEVMLLGQNVNSY-GKGLE---YNFVDLLYEVNKIDGLKRI 215

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+TTSHP+D S  LI A  DLD +  ++HLP+QSGS++ILK M R +T  +Y + +   +
Sbjct: 216 RFTTSHPKDFSKELIDAMRDLDKVCEHIHLPLQSGSNKILKLMRRGYTKEDYLEKVMLFK 275

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              P  +I++D IVGFP ET++DF  T+D++  + Y  +FSFKYS R  T  S M  Q+D
Sbjct: 276 ETIPQGSITTDIIVGFPQETEEDFLETIDVLKTVEYDTSFSFKYSKRPLTKASQMKGQID 335

Query: 384 ENVKAERLLCL--------QKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWL 435
           E  K +RL  L        QKKL+  +        G+I+EVL+E   K++G L GR+   
Sbjct: 336 EKTKLKRLNYLQELQAQITQKKLKNYE--------GKIVEVLVEGKAKKEGMLSGRNR-- 385

Query: 436 QSVVLN---SKNHNIGDIIKVRITDVKISTLYGELV 468
           Q++V+N     N   GD ++V+I      +L GEL+
Sbjct: 386 QNIVVNFNFRDNIKAGDCLRVKIIKALKHSLVGELI 421


>gi|220909156|ref|YP_002484467.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Cyanothece sp.
           PCC 7425]
 gi|219865767|gb|ACL46106.1| RNA modification enzyme, MiaB family [Cyanothece sp. PCC 7425]
          Length = 446

 Score =  305 bits (780), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 177/455 (38%), Positives = 277/455 (60%), Gaps = 23/455 (5%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +R+ + ++GCQMN  DS RM  +    G+    + + ADL++ NTC IR+ A +KVYS+L
Sbjct: 5   RRYHITTFGCQMNKADSERMAGVLEDLGFIWEENPEVADLVLYNTCTIRDNAEQKVYSYL 64

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           G+    +  R ++  DL +VVAGCVAQ EGE++LRR P +++V+GPQ   RL ELLE+  
Sbjct: 65  GK----QARRKRDRPDLTLVVAGCVAQQEGEQLLRRVPELDLVMGPQYANRLGELLEQVF 120

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKR--GVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            G +VV T        E L IV+     +R   VTA++ +  GC++ CT+CVVP  RG+E
Sbjct: 121 NGNQVVAT--------EPLQIVEDITKPRRDSSVTAWVNVIYGCNERCTYCVVPNVRGVE 172

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG------EKCTFSDLLYSLSE 256
            SR+ + +  E  +L   G  E+TLLGQN++A+ G+ L G       + T +DLLY + +
Sbjct: 173 QSRTPAAIRAEIEELARQGYKEVTLLGQNIDAY-GRDLPGVTPEGRHQHTLTDLLYYIHD 231

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           + G+ R+R+ TSHPR  ++ LI+A  +L  +  + H+P QSG + ILK+M R +T  +Y 
Sbjct: 232 VPGIERIRFATSHPRYFTERLIRACAELPKVCEHFHIPFQSGDNDILKAMARGYTREKYL 291

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
            II++IRS  PD +IS+D IVGFPGET+  F  T++LV+ +G+ Q  +  YSPR GTP +
Sbjct: 292 GIIEKIRSYMPDASISADAIVGFPGETEAQFINTLELVETVGFDQLNTAAYSPRPGTPAA 351

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSPWL 435
               Q+ E VK++RL  L   + ++        +G+I  VL+E ++ K+  +++GR+   
Sbjct: 352 QWQNQLPEEVKSDRLQRLNHLVAQKAADRTARYLGRIETVLVEDQNPKDPSQVMGRTQGN 411

Query: 436 QSVVLNSKNHNI-GDIIKVRITDVKISTLYGELVV 469
           +          + G +I V+IT V+  +L GE ++
Sbjct: 412 RLTFFAGDMTQLRGQLIPVKITTVRPFSLSGEPLI 446


>gi|322421071|ref|YP_004200294.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Geobacter sp. M18]
 gi|320127458|gb|ADW15018.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Geobacter sp. M18]
          Length = 441

 Score =  305 bits (780), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 170/445 (38%), Positives = 269/445 (60%), Gaps = 11/445 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ +++++GCQMNV DS ++  +    GY+R     +ADL++LNTC IR  A ++VY  L
Sbjct: 5   KKLYLETFGCQMNVSDSEKIVTLMKGIGYQRTADPVEADLVLLNTCSIRATAEQRVYGHL 64

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           G+ +++K    K+   L++ V GCVAQ EGE +L+++P VN+V G    + L +++  A 
Sbjct: 65  GKFKSMK----KQKPGLIIGVGGCVAQQEGERLLKKAPFVNLVFGTHNLHLLQKMVSGAE 120

Query: 145 FGKRVVDTDY-SVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            GK+ V TD+   E +F+     +     + GV+ F+T+ +GCD FC +C+VP+ RG EI
Sbjct: 121 EGKQSVATDFLDDEKRFDLFPHAES----EGGVSRFVTVMQGCDNFCAYCIVPHVRGREI 176

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SRS ++VV+E   L   GV E+TLLGQNVN++  +  +  +  F DLL  ++ + G+ RL
Sbjct: 177 SRSAARVVEEVAALAAAGVTEVTLLGQNVNSYGFR--EAGEPDFPDLLRMVARVDGIERL 234

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+TTSHP+D+S  LI+    +  L P++HLP QSGSD++LK MNR +T  +Y   +  +R
Sbjct: 235 RFTTSHPKDISPRLIECFAGIPQLAPHIHLPAQSGSDQVLKKMNRGYTRADYLGKVRALR 294

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              P+I  + D IVGFPGE    F  TM+L++++ YA  FSF YS R GT  +   ++V 
Sbjct: 295 DACPEIQFTGDMIVGFPGEDGAAFEQTMELLEEVQYADLFSFIYSARPGTKAAEFPDEVK 354

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
              K  RL  LQ   ++  ++ N++ VG + +VL+E        L GR+   +  V+   
Sbjct: 355 RAEKQARLERLQAAQKKVTLARNESFVGGVQQVLVEGLSTSGDSLFGRTGGNRGTVMAGD 414

Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468
               G I++VRIT+   + L GE++
Sbjct: 415 PSLAGRIVEVRITEGLQTLLKGEVL 439


>gi|254391805|ref|ZP_05007000.1| methylase [Streptomyces clavuligerus ATCC 27064]
 gi|294815497|ref|ZP_06774140.1| Dimethylallyl adenosine tRNA methylthiotransferase miaB
           [Streptomyces clavuligerus ATCC 27064]
 gi|197705487|gb|EDY51299.1| methylase [Streptomyces clavuligerus ATCC 27064]
 gi|294328096|gb|EFG09739.1| Dimethylallyl adenosine tRNA methylthiotransferase miaB
           [Streptomyces clavuligerus ATCC 27064]
          Length = 506

 Score =  305 bits (780), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 182/465 (39%), Positives = 268/465 (57%), Gaps = 31/465 (6%)

Query: 15  SQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERV--NSMDDADLIVLNTCHI 72
           SQ VD   V + + +++YGCQMNV+DS R+  +    GY R    S  DAD++V NTC +
Sbjct: 7   SQAVD---VQRSYEIRTYGCQMNVHDSERLSGLLEEAGYVRAAEGSDGDADVVVFNTCAV 63

Query: 73  REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT 132
           RE A  K+Y  LGR+  +K  R      + + V GC+AQ + + I+ R+P V+VV G   
Sbjct: 64  RENADNKLYGNLGRLAPMKTRRP----GMQIAVGGCLAQKDRDTIVSRAPWVDVVFGTHN 119

Query: 133 YYRLPELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCT 191
             +LP LLERAR  +   V+   S+E     L        R+    A+++I  GC+  CT
Sbjct: 120 IGKLPVLLERARVQEEAQVEIAESLEAFPSTLPT-----RRESAYAAWVSISVGCNNTCT 174

Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDL 250
           FC+VP  RG E  R    ++ E   L+  GV EITLLGQNVNA+   G D G++  FS L
Sbjct: 175 FCIVPALRGKEKDRRPGDILAEIEALVAEGVSEITLLGQNVNAY---GSDIGDREAFSKL 231

Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
           L +   I+GL R+R+T+ HPRD +D +I A  +   +MP LH+P+QSGSD +L++M R +
Sbjct: 232 LRACGRIEGLERVRFTSPHPRDFTDDVIAAMAETPNVMPQLHMPLQSGSDAVLRAMRRSY 291

Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370
               +  IID++R   P  AIS+D IVGFPGET++DF  T+  V +  +A AF+F+YS R
Sbjct: 292 RQERFLGIIDKVREAIPHAAISTDIIVGFPGETEEDFEQTLHTVREARFANAFTFQYSKR 351

Query: 371 LGTPGSNMLEQVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKG 426
            GTP + M  Q+ + V   + ERL+ LQ+++   +   N   VG+++EV++ E  G++ G
Sbjct: 352 PGTPAATMEGQLPKEVVQARYERLVVLQEEISWAE---NKKQVGRVLEVMVAEGEGRKDG 408

Query: 427 ---KLVGRSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGE 466
              +L GR+P  + V        +  GD++ V IT      L  E
Sbjct: 409 ATQRLSGRAPDNRLVHFTKPEEEVRPGDVVTVEITYAAPHHLLAE 453


>gi|328885508|emb|CCA58747.1| tRNA-i(6)A37 methylthiotransferase [Streptomyces venezuelae ATCC
           10712]
          Length = 509

 Score =  305 bits (780), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 176/452 (38%), Positives = 267/452 (59%), Gaps = 26/452 (5%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERV--NSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + +++YGCQMNV+DS R+  +    GY +    S  DAD++V NTC +RE A  K+Y  L
Sbjct: 19  YEIRTYGCQMNVHDSERLSGLLEEAGYVKAPKGSDGDADVVVFNTCAVRENADNKLYGNL 78

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR+  +K +R      + + V GC+AQ + E I+ ++P V+VV G     +LP LLERAR
Sbjct: 79  GRLAPMKTTRP----GMQIAVGGCLAQKDRETIVSKAPWVDVVFGTHNIGKLPVLLERAR 134

Query: 145 FGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             +   ++   S+E     L        R+    A+++I  GC+  CTFC+VP  RG E 
Sbjct: 135 VQEEAQIEIAESLEAFPSTLPT-----RRESAYAAWVSISVGCNNTCTFCIVPALRGKEE 189

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
            R    ++ E   L+  GV EITLLGQNVNA+ G  L G++  FS LL +  +I+GL R+
Sbjct: 190 DRRPGDILAEIEALVAEGVSEITLLGQNVNAY-GSDL-GDREAFSKLLRACGQIEGLERV 247

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+T+ HPRD +D +I A  +   +MP LH+P+QSGSD IL++M R +    +  II+++R
Sbjct: 248 RFTSPHPRDFTDDVIAAMAETPNVMPQLHMPLQSGSDSILRAMRRSYRQERFLGIIEKVR 307

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           +  P  AIS+D IVGFPGET++DF  TM  V +  +A AF+F+YS R GTP ++M  Q+ 
Sbjct: 308 AAIPHAAISTDIIVGFPGETEEDFEQTMHTVREARFANAFTFQYSKRPGTPAADMEGQIP 367

Query: 384 ENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKG---KLVGRSPWLQ 436
           + V  E   RL+ LQ+++  ++   N   VG+ +EV++ E  G++ G   +L GR+P  +
Sbjct: 368 KEVVQERYMRLVALQEEISWEE---NKKQVGRTLEVMVAEGEGRKDGATDRLSGRAPDNR 424

Query: 437 SVVLNSKNHNI--GDIIKVRITDVKISTLYGE 466
            V     + ++  GD++ V IT      L  E
Sbjct: 425 LVHFTKPDEDVRPGDVVTVEITYAAPHHLLAE 456


>gi|147677673|ref|YP_001211888.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Pelotomaculum
           thermopropionicum SI]
 gi|229890589|sp|A5D2K1|MIAB_PELTS RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|146273770|dbj|BAF59519.1| 2-methylthioadenine synthetase [Pelotomaculum thermopropionicum SI]
          Length = 448

 Score =  305 bits (780), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 179/449 (39%), Positives = 270/449 (60%), Gaps = 18/449 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +++ +  +GCQMN +DS  +  +  S GY +  + +D D+I++NTC +R+ A  KV+S L
Sbjct: 2   KKYRIIVFGCQMNEHDSEVLAGILESMGYCQAGNSEDPDIILINTCCVRKTAENKVFSLL 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           GR+R  K     +  +L++ V GC+ Q EG  E I +  P V+++ G    ++LPEL+ +
Sbjct: 62  GRLRRQK----AQNPNLIIGVCGCMPQQEGMAERIKQLFPHVDLIFGTHNVHQLPELIGK 117

Query: 143 ARFGKRVV---DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
              G++ V      Y  E + E L +      RK GV A++TI  GC+ FCT+C+VPY R
Sbjct: 118 VIEGQKQVLEIWPGYGGELR-EELPV-----KRKEGVRAWVTIMYGCNNFCTYCIVPYVR 171

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G E SRS   V +E  +L   G  E+ LLGQNVN++ GK L G K  F+ LL SL  I G
Sbjct: 172 GREKSRSPEAVYEEVARLAGEGFKEVILLGQNVNSY-GKDL-GVKTDFASLLESLENIDG 229

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           + R+RY TSHPRD S  L++A      +  + HLPVQ+GS+RILK MNR +T  EY  +I
Sbjct: 230 IDRIRYMTSHPRDFSLRLVEAIAASKKVCEHFHLPVQAGSNRILKKMNRGYTREEYVDLI 289

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
             I+S+ P   +++D +VGFPGETD+DF  T+DLV +I +  A++F Y+ R GTP + M 
Sbjct: 290 RYIKSLIPHATVTTDIMVGFPGETDEDFNDTLDLVREIRFDSAYTFVYNIRPGTPAAEMP 349

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSPWLQSV 438
           +QV ENVK ER+  L K   +  +  N+  VGQ  EVL+E +  +  G + GR+   ++V
Sbjct: 350 DQVAENVKKERIQALIKLQNKISLERNEEEVGQTQEVLVEGEKDRGSGFIYGRNRGNKTV 409

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGEL 467
           + +     +G ++ V +T  +++ L G L
Sbjct: 410 IFSGDPSLVGKVVPVTVTGARLAHLTGIL 438


>gi|298386977|ref|ZP_06996531.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacteroides sp. 1_1_14]
 gi|298260127|gb|EFI02997.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacteroides sp. 1_1_14]
          Length = 455

 Score =  305 bits (780), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 170/451 (37%), Positives = 268/451 (59%), Gaps = 20/451 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F+++YGCQMNV DS  +  +    GY    ++++AD + +NTC IR+ A +K+ + L
Sbjct: 18  KKLFIETYGCQMNVADSEVIASVMQMAGYSVAETLEEADAVFMNTCSIRDNAEQKILNRL 77

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
               +LK    K+   L+V V GC+A+   ++++     V++VVGP  Y  LPEL+    
Sbjct: 78  EFFHSLK----KKKKALIVGVLGCMAERVKDDLITNHH-VDLVVGPDAYLTLPELIAAVE 132

Query: 145 FGKRVVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            G++ ++ D S  + +  +  S + G +     ++ F++I  GC+ FCT+C+VPYTRG E
Sbjct: 133 AGEKAINVDLSTTETYRDVIPSRICGNH-----ISGFVSIMRGCNNFCTYCIVPYTRGRE 187

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR +  +++E   L+  G  E+TLLGQNVN++R +   GE  TF  LL +++E    VR
Sbjct: 188 RSRDVESILNEVADLVAKGYKEVTLLGQNVNSYRFEKPTGEVVTFPMLLRTVAEAAPGVR 247

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP+DMSD  ++    +  +  ++HLPVQSGS RILK MNR++T   Y   +  I
Sbjct: 248 IRFTTSHPKDMSDETLEVIAQVPNVCKHIHLPVQSGSSRILKLMNRKYTREWYLDRVAAI 307

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE-Q 381
           + + PD  +++D   GF  ET++D + ++ L+++ GY  AF FKYS R GT  S  LE  
Sbjct: 308 KRIIPDCGLTTDIFSGFHSETEEDHQLSLSLMEECGYDAAFMFKYSERPGTYASKHLEDN 367

Query: 382 VDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQS 437
           V E+VK  RL   + LQ +L  +    N  C+G+  EVL+E   K  + +L GR+   + 
Sbjct: 368 VPEDVKVRRLNEIIALQNRLSAES---NQRCIGKTYEVLVEGVSKRSRDQLFGRTEQNRV 424

Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           VV +   H IGD + VR+T+   +TL GE V
Sbjct: 425 VVFDRGTHRIGDFVNVRVTEASSATLKGEEV 455


>gi|253316429|ref|ZP_04839642.1| hypothetical protein SauraC_09846 [Staphylococcus aureus subsp.
           aureus str. CF-Marseille]
          Length = 514

 Score =  305 bits (780), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 171/446 (38%), Positives = 266/446 (59%), Gaps = 15/446 (3%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           F +K+YGCQMN +D+  +  +  + GY+    ++ AD+I++NTC IRE A  KV+S +G 
Sbjct: 70  FLIKTYGCQMNAHDTEVIAGILEALGYQATTDINTADVILINTCAIRENAENKVFSEIGN 129

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           +++LK    KE  D+L+ V GC++Q E    +IL+    V+++ G    + LPE+LE A 
Sbjct: 130 LKHLK----KERPDILIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHHLPEILEEAY 185

Query: 145 FGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             K +V   +S E D  E L  V     R+  + A++ I  GCDKFCT+C+VP+TRG E 
Sbjct: 186 LSKAMVVEVWSKEGDVIENLPKV-----REGNIKAWVNIMYGCDKFCTYCIVPFTRGKER 240

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR    ++DE R+L   G  EITLLGQNVN++ GK L   +    DLL ++S+I  + R+
Sbjct: 241 SRRPEDIIDEVRELAREGYKEITLLGQNVNSY-GKDLQDREYDLGDLLQAISKI-AIPRV 298

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+TTSHP D +D +I    +   ++P++HLPVQSG++ +LK M R++T   Y  ++ RI+
Sbjct: 299 RFTTSHPWDFTDHMIDVISEGGNIVPHIHLPVQSGNNAVLKIMGRKYTRESYLDLVKRIK 358

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              P++A+++D IVG+P E+++ F  T+ L D++G+  A+++ YS R GTP + M + V 
Sbjct: 359 DRIPNVALTTDIIVGYPNESEEQFEETLTLYDEVGFEHAYTYLYSQRDGTPAAKMKDNVP 418

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVLNS 442
            NVK ERL  L KK+            GQ + VL E   K+  + L G +   + V   +
Sbjct: 419 LNVKKERLQRLNKKVGHYSQIAMSKYEGQTVTVLCEGSSKKDDQVLAGYTDKNKLVNFKA 478

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
               IG +++VRI + K  +L G  V
Sbjct: 479 PKEMIGKLVEVRIDEAKQYSLNGSFV 504


>gi|160888105|ref|ZP_02069108.1| hypothetical protein BACUNI_00513 [Bacteroides uniformis ATCC 8492]
 gi|156862416|gb|EDO55847.1| hypothetical protein BACUNI_00513 [Bacteroides uniformis ATCC 8492]
          Length = 457

 Score =  305 bits (780), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 170/452 (37%), Positives = 269/452 (59%), Gaps = 20/452 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F+++YGCQMNV DS  +  +    GY   +++++AD + +NTC IR+ A +K+ + L
Sbjct: 18  KKLFIETYGCQMNVADSEVIASVMQMAGYSVADTLEEADAVFMNTCSIRDNAEQKILNRL 77

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
               +LK    K+   L+V V GC+A+   ++++     V++VVGP  Y  LPEL+    
Sbjct: 78  EFFHSLK----KKKRGLIVGVLGCMAERVKDDLITNHH-VDLVVGPDAYLTLPELIASVE 132

Query: 145 FGKRVVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            G++ ++ + S  + +  +  S + G +     ++ F++I  GC+ FCT+C+VPYTRG E
Sbjct: 133 AGEKAINVELSTTETYRDVIPSRICGNH-----ISGFVSIMRGCNNFCTYCIVPYTRGRE 187

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR +  +++E   L+  G  E+TLLGQNVN++R +  DGE  TF  LL +++E    VR
Sbjct: 188 RSRDVESILNEVADLVAKGYKEVTLLGQNVNSYRFEKPDGETITFPMLLRTVAEAAPGVR 247

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP+DMSD  ++   D+  +  ++HLPVQSGS RILK MNR++    Y   +  I
Sbjct: 248 IRFTTSHPKDMSDETLQVIADMPNVCKHIHLPVQSGSSRILKLMNRKYDREWYMDRVAAI 307

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML-EQ 381
           R + PD  +S+D   GF  ET++D + ++ L+++ GY  AF FKYS R GT  S  L + 
Sbjct: 308 RRIIPDCGLSTDIFSGFHSETEEDHQLSLSLMEECGYDSAFMFKYSERPGTHASKYLPDD 367

Query: 382 VDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQS 437
           V E VK  RL   + LQ +L  +    N  CVG+  EVL+E   K  + +L GR+   + 
Sbjct: 368 VPEEVKIRRLNEIIALQNRLSAEA---NARCVGKTYEVLVEGVSKRSRDQLFGRTEQNRV 424

Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
           VV +   H +GD + V++T+   +TL GE V 
Sbjct: 425 VVFDRGTHRVGDFVMVKVTESSSATLKGEEVA 456


>gi|254386091|ref|ZP_05001405.1| methylase of isopentenylated A37 derivatives in tRNA [Streptomyces
           sp. Mg1]
 gi|194344950|gb|EDX25916.1| methylase of isopentenylated A37 derivatives in tRNA [Streptomyces
           sp. Mg1]
          Length = 506

 Score =  304 bits (779), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 178/452 (39%), Positives = 266/452 (58%), Gaps = 26/452 (5%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERV--NSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + V++YGCQMNV+DS R+  +    GY R    S  DAD++V NTC +RE A  K+Y  L
Sbjct: 17  YEVRTYGCQMNVHDSERLSGLLEGAGYTRAPEGSDGDADVVVFNTCAVRENADNKLYGNL 76

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR+  +K  R      + + V GC+AQ + + I++R+P V+VV G     +LP LLERAR
Sbjct: 77  GRLAPMKTKRP----GMQIAVGGCLAQKDRDTIVKRAPWVDVVFGTHNIGKLPVLLERAR 132

Query: 145 FGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             +   V+   S+E     L        R+    A+++I  GC+  CTFC+VP  RG E 
Sbjct: 133 VQEEAQVEIAESLEAFPSTLPT-----RRESAYAAWVSISVGCNNTCTFCIVPALRGKEE 187

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
            R    ++ E   L+  GV EITLLGQNVNA+ G  L G++  FS LL +   I+GL R+
Sbjct: 188 DRRPGDILAEVEALVAEGVSEITLLGQNVNAY-GSDL-GDREAFSKLLRACGGIEGLERV 245

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+T+ HPRD +D +I A  +   +MP LH+P+QSGSD IL++M R +    +  II+++R
Sbjct: 246 RFTSPHPRDFTDDVIAAMAETPNVMPQLHMPLQSGSDPILRAMRRSYRQERFLGIIEKVR 305

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           +  P  AIS+D IVGFPGET++DF+ TM  V +  +A AF+F+YS R GTP ++M  Q+ 
Sbjct: 306 AAIPHAAISTDIIVGFPGETEEDFQQTMHTVREARFANAFTFQYSKRPGTPAADMEGQIP 365

Query: 384 ENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKG---KLVGRSPWLQ 436
           + V  +   RL+ LQ+++  ++   N   VG+ +EV++ E  G++ G   +L GR+P  +
Sbjct: 366 KEVVQDRYMRLVALQEEISWEE---NKKQVGRTLEVMVAEGEGRKDGATDRLSGRAPDNR 422

Query: 437 SVVLNSKNHNI--GDIIKVRITDVKISTLYGE 466
            V     +  +  GD++ V IT      L  E
Sbjct: 423 LVHFTKPDEEVRPGDVVTVDITYAAPHHLLAE 454


>gi|126663275|ref|ZP_01734273.1| 2-methylthioadenine synthetase [Flavobacteria bacterium BAL38]
 gi|126624933|gb|EAZ95623.1| 2-methylthioadenine synthetase [Flavobacteria bacterium BAL38]
          Length = 482

 Score =  304 bits (779), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 177/459 (38%), Positives = 259/459 (56%), Gaps = 22/459 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F++SYGCQMN  DS  +  + +  GY    +++DADL+++NTC IR+KA + +   L
Sbjct: 24  KKLFIESYGCQMNFSDSEIVASILYENGYNTTQNLEDADLVLVNTCSIRDKAEQTIRKRL 83

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            +   +K    K    + V V GC+A+    + L    IV++VVGP  Y  LP LL    
Sbjct: 84  EKYNAVK----KINPTMKVGVLGCMAERLKSQFLEEEKIVDMVVGPDAYKDLPNLLAEVE 139

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G+  ++   S E+ +  +S V    N   GV AF++I  GCD  CTFCVVP+TRG E S
Sbjct: 140 EGRDAINVILSKEETYGDISPVRLNSN---GVNAFVSITRGCDNMCTFCVVPFTRGRERS 196

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNA--WRGKGL--DGEKCT---------FSDLL 251
           R    ++DE + L D G  E+TLLGQNV++  W G GL  D +K T         F+ LL
Sbjct: 197 REPQSIIDEIQDLYDRGFKEVTLLGQNVDSYLWYGGGLKKDYDKATEIQKATAMDFAQLL 256

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
              + +   +R R++TS+P+DM + ++        +  Y+HLPVQSGS RILK MNR+HT
Sbjct: 257 DKCATLFPKMRFRFSTSNPQDMHEEVLHVIAKHHNICNYIHLPVQSGSTRILKEMNRQHT 316

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
             EY  +ID+I S+ PDI++S D I GFP ET++D + T+ L++ + Y   F F YS R 
Sbjct: 317 REEYMALIDKIYSIIPDISLSQDMIAGFPTETEEDHQDTLSLMEYVKYDFGFMFAYSERP 376

Query: 372 GTPGSNMLE-QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLV 429
           GT  +  +E  V E VK  RL  +    ++  +      +GQ +EVLIEK  K       
Sbjct: 377 GTLAARKMEDDVPEEVKKRRLTEIVDLQQKHGLERTQRFIGQEVEVLIEKESKRSDAHWS 436

Query: 430 GRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           GR+     VV   +N+ +G+ + V+ITD   +TL GE V
Sbjct: 437 GRNSQNTVVVFPKENYKVGEFVMVKITDCTAATLIGEAV 475


>gi|239982707|ref|ZP_04705231.1| hypothetical protein SalbJ_24974 [Streptomyces albus J1074]
          Length = 480

 Score =  304 bits (779), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 174/454 (38%), Positives = 266/454 (58%), Gaps = 29/454 (6%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERV---NSMDDADLIVLNTCHIREKAAEKVYSF 83
           + V++YGCQMNV+DS R+  +    GY R        DAD++V NTC +RE A  ++Y  
Sbjct: 19  YEVRTYGCQMNVHDSERLAGLLEGAGYVRSPEGTEEGDADVVVFNTCAVRENADNRLYGN 78

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR+  +K  R      + + V GC+AQ + + I +R+P V+VV G     +LP LLERA
Sbjct: 79  LGRLAPMKTRRP----GMQIAVGGCLAQKDRDTITKRAPWVDVVFGTHNIGKLPVLLERA 134

Query: 144 RFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           R  +   V+   S+E     L        R+    A++++  GC+  CTFC+VP  RG E
Sbjct: 135 RVQEEAQVEIAESLEAFPSTLPT-----RRESAYAAWVSVSVGCNNTCTFCIVPALRGKE 189

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLV 261
             R    ++ E   L+  GV EITLLGQNVNA+   G D G++  FS LL +  +I+GL 
Sbjct: 190 KDRRTGDILAEVEALVAEGVSEITLLGQNVNAY---GSDIGDRQAFSKLLRACGKIEGLE 246

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+T+ HPRD +D +I A  +   +MP LH+P+QSGSD +L++M R +    +  II++
Sbjct: 247 RVRFTSPHPRDFTDDVIAAMAETPNVMPQLHMPLQSGSDTVLRAMRRSYRQERFLSIIEK 306

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R+  PD AI++D IVGFPGET++DF+ T+  V +  +AQAF+F+YS R GTP + M  Q
Sbjct: 307 VRAAIPDAAITTDIIVGFPGETEEDFQQTLHTVREARFAQAFTFQYSKRPGTPAAEMDGQ 366

Query: 382 VDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKG---KLVGRSPW 434
           + + V  E   RL+ LQ+++  ++   N    G+++EV++ E  G++ G   +L GR+P 
Sbjct: 367 IPKEVVQERYMRLVALQEEISWEE---NKKQTGRVLEVMVAEGEGRKDGATRRLSGRAPD 423

Query: 435 LQSVVLNSKNHNI--GDIIKVRITDVKISTLYGE 466
            + V     +  +  GD++ V IT      L  E
Sbjct: 424 NRLVHFTKPDEEVRPGDVVTVEITYAAPHHLLAE 457


>gi|242279951|ref|YP_002992080.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Desulfovibrio
           salexigens DSM 2638]
 gi|242122845|gb|ACS80541.1| RNA modification enzyme, MiaB family [Desulfovibrio salexigens DSM
           2638]
          Length = 458

 Score =  304 bits (779), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 188/464 (40%), Positives = 273/464 (58%), Gaps = 32/464 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +F V ++GCQMNV+DS  +     S+G+  V    +AD+ ++NTC +R+K  +KVYS LG
Sbjct: 2   KFTVLTFGCQMNVHDSDWLIRAMESRGWTAVEE-SEADIFIINTCSVRDKPEQKVYSVLG 60

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE--RA 143
           R+  L     K  G   V V GCVAQ  G+  L + P V +V G     + P+ L    A
Sbjct: 61  RLAPL----CKNPGSF-VAVGGCVAQQIGDGFLEKFPHVRLVFGSDGIAQAPDALVDLAA 115

Query: 144 RFGKRVVDTDYSVEDKFER--------LSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
              KR+V TD+ + D  ER          ++  G     G  AF+ I +GCD FC +C+V
Sbjct: 116 NHEKRLVLTDF-LGDYPEREGGEVQPNADLIPPGIGTIPG-QAFVNIMQGCDNFCAYCIV 173

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD--GEKCTFSDLLYS 253
           PYTRG + SRS   V+ E   L+ +GV EITLLGQNVN++   G+D  GE  +F+ LLY 
Sbjct: 174 PYTRGRQKSRSSEAVIKECAHLVKSGVREITLLGQNVNSF---GIDKKGEDISFAQLLYK 230

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
           +S I+GL R+R+TTSHP+D++  +IKA G+L  L P LHLPVQSGSDRILK M R++   
Sbjct: 231 ISAIEGLERIRFTTSHPKDIAPEVIKAFGELPNLCPSLHLPVQSGSDRILKKMGRKYDRE 290

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
            Y  I++ ++   P+I++++D IVGFPGETD+DF  TMD+++++ Y  +FSFKYS R G 
Sbjct: 291 RYLGIVEGLKEACPNISLTTDLIVGFPGETDEDFEQTMDMLERVRYESSFSFKYSDRPGV 350

Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK--EKGKLV-- 429
               M  +V E+V   RL  LQ++ +       +A  G    VL+E+  K  E+G +   
Sbjct: 351 AAVKMKPKVPEDVAQARLARLQERQKRITRKSLEALEGHETVVLLERLSKRQEEGGMTWR 410

Query: 430 GRSPWLQSVVLNSKNHNI-----GDIIKVRITDVKISTLYGELV 468
           G+ P  + V ++   +       G ++KV+IT+ K  +L G  V
Sbjct: 411 GKDPGGRVVNVHFAGYGEEQKLGGKLVKVKITEAKNHSLVGAKV 454


>gi|291454555|ref|ZP_06593945.1| RNA modification enzyme [Streptomyces albus J1074]
 gi|291357504|gb|EFE84406.1| RNA modification enzyme [Streptomyces albus J1074]
          Length = 505

 Score =  304 bits (778), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 174/454 (38%), Positives = 266/454 (58%), Gaps = 29/454 (6%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERV---NSMDDADLIVLNTCHIREKAAEKVYSF 83
           + V++YGCQMNV+DS R+  +    GY R        DAD++V NTC +RE A  ++Y  
Sbjct: 44  YEVRTYGCQMNVHDSERLAGLLEGAGYVRSPEGTEEGDADVVVFNTCAVRENADNRLYGN 103

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR+  +K  R      + + V GC+AQ + + I +R+P V+VV G     +LP LLERA
Sbjct: 104 LGRLAPMKTRRP----GMQIAVGGCLAQKDRDTITKRAPWVDVVFGTHNIGKLPVLLERA 159

Query: 144 RFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           R  +   V+   S+E     L        R+    A++++  GC+  CTFC+VP  RG E
Sbjct: 160 RVQEEAQVEIAESLEAFPSTLPT-----RRESAYAAWVSVSVGCNNTCTFCIVPALRGKE 214

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLV 261
             R    ++ E   L+  GV EITLLGQNVNA+   G D G++  FS LL +  +I+GL 
Sbjct: 215 KDRRTGDILAEVEALVAEGVSEITLLGQNVNAY---GSDIGDRQAFSKLLRACGKIEGLE 271

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+T+ HPRD +D +I A  +   +MP LH+P+QSGSD +L++M R +    +  II++
Sbjct: 272 RVRFTSPHPRDFTDDVIAAMAETPNVMPQLHMPLQSGSDTVLRAMRRSYRQERFLSIIEK 331

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R+  PD AI++D IVGFPGET++DF+ T+  V +  +AQAF+F+YS R GTP + M  Q
Sbjct: 332 VRAAIPDAAITTDIIVGFPGETEEDFQQTLHTVREARFAQAFTFQYSKRPGTPAAEMDGQ 391

Query: 382 VDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKG---KLVGRSPW 434
           + + V  E   RL+ LQ+++  ++   N    G+++EV++ E  G++ G   +L GR+P 
Sbjct: 392 IPKEVVQERYMRLVALQEEISWEE---NKKQTGRVLEVMVAEGEGRKDGATRRLSGRAPD 448

Query: 435 LQSVVLNSKNHNI--GDIIKVRITDVKISTLYGE 466
            + V     +  +  GD++ V IT      L  E
Sbjct: 449 NRLVHFTKPDEEVRPGDVVTVEITYAAPHHLLAE 482


>gi|94968901|ref|YP_590949.1| tRNA-i(6)A37 modification enzyme MiaB [Candidatus Koribacter
           versatilis Ellin345]
 gi|123256543|sp|Q1IQH5|MIAB_ACIBL RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|94550951|gb|ABF40875.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Candidatus Koribacter
           versatilis Ellin345]
          Length = 444

 Score =  304 bits (778), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 176/451 (39%), Positives = 265/451 (58%), Gaps = 20/451 (4%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+ F+++++GCQMN +DS ++     SQGY +V +  DA LI+ NTC IR+KA +KV+  
Sbjct: 7   PKTFYIETFGCQMNFHDSEKVVGTLISQGYRQVETELDAGLILYNTCSIRDKAEQKVFHR 66

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           L   R L+    KEG    V+  GCVAQ EGE+I  R+P V++V G  +Y  L E+L + 
Sbjct: 67  LSEFRQLQ----KEGKRFAVL--GCVAQQEGEKIFERAPHVSLVAGSASYRNLAEMLVQI 120

Query: 144 RFGKRVVD--TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
             G + +    D   +  FE      G  +R      ++TI EGCDKFC +CVVPYTRG 
Sbjct: 121 ESGSQRITGLDDRETDQTFETEFTARGNAHR-----GYITIIEGCDKFCAYCVVPYTRGK 175

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SRS   V+ EAR++ D G  ++ LLGQNVN++          TF++LL ++ EI G+ 
Sbjct: 176 ERSRSAESVLREARQMADAGFTDVQLLGQNVNSYHDPS---GTMTFAELLTAVGEITGIK 232

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHPRD +  +++A  +   L  ++HLPVQSGS ++L+ M R +T  +Y + I  
Sbjct: 233 RVRFTTSHPRDFTRDIVEAIDNHPTLCDHVHLPVQSGSSKVLREMFREYTREQYLERISW 292

Query: 322 IRSVRP-DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           +++ +   ++I++D IVGFPGET+ +F  T+ L+D + Y   FSFKYSPR  TP    ++
Sbjct: 293 MKATKNRKLSITTDVIVGFPGETETEFEETLALLDHVQYDGVFSFKYSPRPNTPALKYID 352

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPW---LQS 437
            V E  K+ RL  L +  RE Q +     +G+ IEV++E     + + +GR+     L  
Sbjct: 353 TVPEQEKSRRLQILMEHQREIQRANYRKHIGETIEVMVEAENATRAQWIGRTSQNKTLNF 412

Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            V  +    IG   +V +T    ++L GELV
Sbjct: 413 TVPQTVQPEIGSYHQVLVTQAFPNSLVGELV 443


>gi|189464718|ref|ZP_03013503.1| hypothetical protein BACINT_01062 [Bacteroides intestinalis DSM
           17393]
 gi|189436992|gb|EDV05977.1| hypothetical protein BACINT_01062 [Bacteroides intestinalis DSM
           17393]
          Length = 470

 Score =  304 bits (778), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 171/451 (37%), Positives = 270/451 (59%), Gaps = 20/451 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F+++YGCQMNV DS  +  +    GY   +++++AD + +NTC IR+ A +K+ + L
Sbjct: 33  KKLFIETYGCQMNVADSEVIASVMQMAGYSTADTLEEADAVFMNTCSIRDNAEQKILNRL 92

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
               +LK    K+  +L+V V GC+A+   ++++     V++VVGP  Y  LP+L+    
Sbjct: 93  EFFHSLK----KKKRNLIVGVLGCMAERVKDDLITNHH-VDLVVGPDAYLTLPDLVAAVE 147

Query: 145 FGKRVVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            G++ ++ + S  + +  +  S + G +     ++ F++I  GC+ FCT+C+VPYTRG E
Sbjct: 148 AGEKAINVELSTTETYRDVIPSRICGNH-----ISGFVSIMRGCNNFCTYCIVPYTRGRE 202

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR +  +++E   L+  G  E+TLLGQNVN++R +  DGE  TF  LL +++E    VR
Sbjct: 203 RSRDVESILNEVSDLVVKGYKEVTLLGQNVNSYRFEKPDGEVVTFPMLLRTVAEAAPGVR 262

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP+DMSD  ++    +  +  ++HLPVQSGS RILK MNR++T   Y   +D I
Sbjct: 263 VRFTTSHPKDMSDETLEVIAQVPNVCKHIHLPVQSGSSRILKLMNRKYTREWYLGRVDAI 322

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML-EQ 381
           R + PD  +S+D   GF  ET++D   ++ L++  GY  AF FKYS R GT  S  L + 
Sbjct: 323 RRIIPDCGLSTDIFSGFHSETEEDHLLSLSLMEICGYDSAFMFKYSERPGTYASKHLPDD 382

Query: 382 VDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQS 437
           V E VK  RL   + LQ +L  +    N  C+G+  EVL+E   K  + +LVGR+   + 
Sbjct: 383 VSEEVKIRRLNEIIALQNRLSAES---NARCIGKTYEVLVEGVSKRSREQLVGRTEQNRV 439

Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           VV +   H +GD + V+IT+   +TL GE V
Sbjct: 440 VVFDRGTHRVGDFVMVKITEASSATLKGEEV 470


>gi|319936488|ref|ZP_08010904.1| tRNA 2-methylthioadenine synthetase [Coprobacillus sp. 29_1]
 gi|319808603|gb|EFW05155.1| tRNA 2-methylthioadenine synthetase [Coprobacillus sp. 29_1]
          Length = 480

 Score =  304 bits (778), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 167/448 (37%), Positives = 267/448 (59%), Gaps = 16/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           Q++F+++YGCQ N  D   +  +  S GYE  + + DA +++LNTC IRE A EKV+  +
Sbjct: 44  QKYFIQTYGCQANERDGETLAGILESLGYEATDEIKDAQVVLLNTCAIRENAEEKVFGKI 103

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G ++ +K +      +++  + GC+AQ E   ++IL +   V+++ G    +RLP LL++
Sbjct: 104 GYLKKVKRT----NPNVIFGICGCMAQEEVVIQKILEKHQQVDMIFGTHNIHRLPVLLKQ 159

Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           A   K +V   +S E D  E L       +R     A++ I  GC+KFCT+C+VPYTRG 
Sbjct: 160 AMLDKEMVLEVWSKEGDVIENLP-----SHRAHPYKAWVNIMYGCNKFCTYCIVPYTRGK 214

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR  +++++E  +L   G  EITLLGQNVN++ GK  D +   F+ LL  +++  G+ 
Sbjct: 215 ERSRLKNEIIEEVNELKAQGYQEITLLGQNVNSY-GKDFD-DGYNFASLLADVAQT-GIP 271

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHP D +D +I      D +MP +HLPVQSG+  +LK M RR++  +Y ++ D+
Sbjct: 272 RIRFTTSHPWDFTDDMIDTIAQYDNIMPAIHLPVQSGNSEVLKRMGRRYSREQYLELFDK 331

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I++  PD  I++D IVGFPGETD+ F  T+ L +   Y  A++F YSPR GTP + M + 
Sbjct: 332 IKTKIPDCTITTDIIVGFPGETDEQFEDTITLYEHCEYDLAYTFIYSPRAGTPAAKMEDD 391

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSPWLQSVVL 440
           +D + K +RL  L   + E+ +  N   + +++EVL+E    K+   L G +   + +  
Sbjct: 392 IDIHTKEQRLYRLNDLVNEKALKQNQKYLDEVVEVLVEGTSKKDDNMLTGYTRHQKLINF 451

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                +IG I+ V++T+VK   L GE +
Sbjct: 452 KGNQDHIGQIVPVKVTEVKTWALKGEEI 479


>gi|270295132|ref|ZP_06201333.1| tRNA-I(6)A37 thiotransferase [Bacteroides sp. D20]
 gi|317478131|ref|ZP_07937306.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacteroides sp. 4_1_36]
 gi|270274379|gb|EFA20240.1| tRNA-I(6)A37 thiotransferase [Bacteroides sp. D20]
 gi|316905729|gb|EFV27508.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacteroides sp. 4_1_36]
          Length = 457

 Score =  304 bits (778), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 170/452 (37%), Positives = 269/452 (59%), Gaps = 20/452 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F+++YGCQMNV DS  +  +    GY   +++++AD + +NTC IR+ A +K+ + L
Sbjct: 18  KKLFIETYGCQMNVADSEVIASVMQMAGYSVADTLEEADAVFMNTCSIRDNAEQKILNRL 77

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
               +LK    K+   L+V V GC+A+   ++++     V++VVGP  Y  LPEL+    
Sbjct: 78  EFFHSLK----KKKRGLIVGVLGCMAERVKDDLITNHH-VDLVVGPDAYLTLPELIASVE 132

Query: 145 FGKRVVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            G++ ++ + S  + +  +  S + G +     ++ F++I  GC+ FCT+C+VPYTRG E
Sbjct: 133 AGEKAMNVELSTTETYRDVIPSRICGNH-----ISGFVSIMRGCNNFCTYCIVPYTRGRE 187

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR +  +++E   L+  G  E+TLLGQNVN++R +  DGE  TF  LL +++E    VR
Sbjct: 188 RSRDVESILNEVADLVAKGYKEVTLLGQNVNSYRFEKPDGETITFPMLLRTVAEAAPGVR 247

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP+DMSD  ++   D+  +  ++HLPVQSGS RILK MNR++    Y   +  I
Sbjct: 248 IRFTTSHPKDMSDETLQVIADMPNVCKHIHLPVQSGSSRILKLMNRKYDREWYMDRVAAI 307

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML-EQ 381
           R + PD  +S+D   GF  ET++D + ++ L+++ GY  AF FKYS R GT  S  L + 
Sbjct: 308 RRIIPDCGLSTDIFSGFHSETEEDHQLSLSLMEECGYDSAFMFKYSERPGTHASKYLPDD 367

Query: 382 VDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQS 437
           V E VK  RL   + LQ +L  +    N  CVG+  EVL+E   K  + +L GR+   + 
Sbjct: 368 VPEEVKIRRLNEIIALQNRLSAEA---NARCVGKTYEVLVEGVSKRSRDQLFGRTEQNRV 424

Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
           VV +   H +GD + V++T+   +TL GE V 
Sbjct: 425 VVFDRGTHRVGDFVMVKVTESSSATLKGEEVA 456


>gi|160947537|ref|ZP_02094704.1| hypothetical protein PEPMIC_01471 [Parvimonas micra ATCC 33270]
 gi|158446671|gb|EDP23666.1| hypothetical protein PEPMIC_01471 [Parvimonas micra ATCC 33270]
          Length = 441

 Score =  303 bits (777), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 170/449 (37%), Positives = 260/449 (57%), Gaps = 14/449 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + +++ + +YGCQMN +DS ++  +  + GY + + ++ +D I+ NTC +RE A  KVY 
Sbjct: 4   LSKKYTIITYGCQMNHHDSEKISYLLETLGYTKEDDLEKSDFIIYNTCLVRENAELKVYG 63

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQA--EGEEILRRSPIVNVVVGPQTYYRLPELL 140
            LG ++NLK  +     ++++ V GC+ Q       I+ +   V+++ G +   RLP L+
Sbjct: 64  QLGALKNLKRKK----PEMIIAVCGCMMQTGDARATIISKYKHVDIIFGTKNISRLPSLI 119

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
            R R    V+      +   +   I     NR+    A++ I  GC+ +CTFC+VPY RG
Sbjct: 120 ARHRSTGEVIVDIEEEDIIDDETPI-----NREHPFIAYVNIMTGCNNYCTFCIVPYARG 174

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            EISR+   +++E + L   G  EITLLGQNVN++ GK L   K TF +LL  ++EI G+
Sbjct: 175 KEISRTPESIINEIKDLAKKGYKEITLLGQNVNSY-GKTLR-PKVTFPELLKMVNEIDGI 232

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+ TSHP+D SD LI A   LD +   +HLP QSGS++ILK M+R +T   Y ++I 
Sbjct: 233 ERIRFLTSHPKDCSDELIDAMASLDKVCENIHLPFQSGSNKILKDMHRVYTREHYLELIR 292

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           +++   P+I +S+D IVGFPGET++DF  T+ +V+K+GY Q F+F YS R GT  + M  
Sbjct: 293 KLKEKVPNITLSTDIIVGFPGETEEDFEDTLSMVEKVGYDQGFTFLYSIRKGTKAAEMQN 352

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVV 439
           Q+   VK ER   L   + +     N  C+GQ +EVL+E   K     L GR+   + V 
Sbjct: 353 QIPHEVKQERFQRLIDSMYKIFYEKNKECLGQTLEVLVEGISKNNPDILTGRTRGYKLVH 412

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                 NIG ++ V+IT      L GE+V
Sbjct: 413 FKGGKRNIGQLVNVKITGHNSFALEGEIV 441


>gi|218131688|ref|ZP_03460492.1| hypothetical protein BACEGG_03309 [Bacteroides eggerthii DSM 20697]
 gi|217985991|gb|EEC52330.1| hypothetical protein BACEGG_03309 [Bacteroides eggerthii DSM 20697]
          Length = 456

 Score =  303 bits (777), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 170/451 (37%), Positives = 271/451 (60%), Gaps = 20/451 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F+++YGCQMNV DS  +  +    GY   +++++AD + +NTC IR+ A +K+ + L
Sbjct: 19  KKLFIETYGCQMNVADSEVIASVMQMAGYSVADTLEEADAVFMNTCSIRDNAEQKILNRL 78

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
               +LK    K+  +L+V V GC+A+   ++++     V++VVGP  Y  LP+L+    
Sbjct: 79  EFFHSLK----KKKKNLIVGVLGCMAERVKDDLITNHH-VDLVVGPDAYLTLPDLIAAVE 133

Query: 145 FGKRVVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            G++ ++ + S  + +  +  S + G +     ++ F++I  GC+ FCT+C+VPYTRG E
Sbjct: 134 AGEKAINVELSTTETYRDVIPSRICGNH-----ISGFVSIMRGCNNFCTYCIVPYTRGRE 188

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR +  +++E   L+  G  E+TLLGQNVN++R +  DGE  TF  LL  ++     VR
Sbjct: 189 RSRDVESILNEVSDLVAKGYKEVTLLGQNVNSYRFEKADGEVITFPMLLRIVAGAAPGVR 248

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP+DMSD  ++   ++  +  ++HLPVQSGS RILK MNR++T   Y + +D I
Sbjct: 249 IRFTTSHPKDMSDETLQVIAEVPNVCKHIHLPVQSGSSRILKLMNRKYTREWYLERVDAI 308

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML-EQ 381
           R + PD  +S+D   GF  ET++D + ++ L+++ GY  AF FKYS R GT  S  L + 
Sbjct: 309 RRIVPDCGLSTDIFSGFHSETEEDHQLSLSLMEECGYDAAFMFKYSERPGTYASKHLPDD 368

Query: 382 VDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQS 437
           V E VK  RL   + LQ +L  +    N  CVG+  EVL+E   K  + +L GR+   + 
Sbjct: 369 VPEEVKIRRLNEIIALQNRLSAEA---NARCVGKTYEVLVEGVSKRSRDQLFGRTEQNRV 425

Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           VV +   H +GD + V+IT+   +TL GE V
Sbjct: 426 VVFDRGAHRVGDFVTVKITESSSATLKGEEV 456


>gi|16329745|ref|NP_440473.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Synechocystis
           sp. PCC 6803]
 gi|2501538|sp|P73127|MIAB_SYNY3 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|1652230|dbj|BAA17153.1| sll0996 [Synechocystis sp. PCC 6803]
          Length = 451

 Score =  303 bits (777), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 175/452 (38%), Positives = 272/452 (60%), Gaps = 23/452 (5%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +R+ + ++GCQMN  DS RM  +  + G    +  + ADL++ NTC IR+ A +KVYS+L
Sbjct: 6   RRYHIITFGCQMNKADSERMAGILENLGMTYTDDPNQADLVLYNTCSIRDNAEQKVYSYL 65

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR    +  R +   +L +VVAGCVAQ EGE++LRR P +++V+GPQ   RL +LLE+  
Sbjct: 66  GR----QAKRKQVEPELTLVVAGCVAQQEGEQLLRRVPELDLVMGPQHANRLDQLLEQVW 121

Query: 145 FGKRVVDTDYSVEDKFERLSIVD--GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            G +VV T        E L I++      R+  V+A++ I  GC++ C++CVVP  RG+E
Sbjct: 122 AGSQVVAT--------ESLHIMEDITKPRRESTVSAWVNIIYGCNERCSYCVVPNVRGVE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC------TFSDLLYSLSE 256
            SR+   +  E   L   G  E+TLLGQN++A+ G+ L G         T +DLLY + +
Sbjct: 174 QSRTPEAIYGEMEVLAQQGFKEVTLLGQNIDAY-GRDLPGTTPSGRHLHTLTDLLYHVHD 232

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           I+G+ RLR+ TSHPR  ++ LI+A  +L  +  + H+P QSG + ILK+M R +T  +Y 
Sbjct: 233 IEGIDRLRFATSHPRYFTERLIQACQELPKVCEHFHIPFQSGDNDILKAMKRGYTREKYL 292

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
           QII++IR   PD AIS+D IVGFPGET+  F  T++L++++G+    +  YSPR GTP +
Sbjct: 293 QIIEKIRRYMPDAAISADVIVGFPGETEAQFENTLNLIEEVGFDLLNTAAYSPRPGTPAA 352

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWL 435
               Q+ E VK +RL  L   +  Q +  +   +G++ EVL+E    K  G+++GR+   
Sbjct: 353 FWDNQLSEEVKGDRLQRLNHLVSTQAMERSQRYLGRVEEVLVEGENLKSPGQVMGRTRGN 412

Query: 436 QSVVLNSK-NHNIGDIIKVRITDVKISTLYGE 466
           +      + +  +G  + V+IT+ +  +L GE
Sbjct: 413 RLTFFQGEISELLGKTVPVKITEARAFSLTGE 444


>gi|162453546|ref|YP_001615913.1| hypothetical protein sce5270 [Sorangium cellulosum 'So ce 56']
 gi|229891000|sp|A9FST8|MIAB_SORC5 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|161164128|emb|CAN95433.1| hypothetical protein sce5270 [Sorangium cellulosum 'So ce 56']
          Length = 498

 Score =  303 bits (777), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 180/471 (38%), Positives = 260/471 (55%), Gaps = 35/471 (7%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R+ + ++GCQMNV+DS RM D+    GY    S D+AD++VLNTC +REKA +K+ S +G
Sbjct: 3   RYSITTFGCQMNVHDSERMHDVLRCAGYTEAGSADEADVLVLNTCSVREKAEQKLRSEVG 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R+   K  R     D ++VVAGCVAQ EGE +L++   ++VVVGP     LP LL     
Sbjct: 63  RLARWKRER----ADRVLVVAGCVAQQEGERLLKQMRAIDVVVGPDNIPELPGLLGDLAI 118

Query: 146 G-----KRVVDTDYSVEDKF--ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
           G     + V D D     +F            + +   TAF+T+ +GCD+ C+FC+VP+T
Sbjct: 119 GGLPIARTVFDLDAP---RFLVASPPSPSSSSSPRAAPTAFVTVMKGCDERCSFCIVPHT 175

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR-----------GKGLDGEKCTF 247
           RG E  R   ++V E   L+  G  E+TLLGQ VN++R               D ++  F
Sbjct: 176 RGPERYRPSDEIVAEIAALVAAGTREVTLLGQTVNSYRDPLGALPRAPGASADDPDESEF 235

Query: 248 SDLLYSLS-EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306
           + LL  ++ ++ GL RLRYT+ HPR ++  L+ AH +L VL  ++H+PVQSGSDR+L+ M
Sbjct: 236 AALLRRVAADVPGLARLRYTSPHPRHLTPSLVLAHAELPVLPRHVHMPVQSGSDRVLRRM 295

Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
            RR+T  EY      +    P + +S+D IVGFPGET+DDF AT+ LV ++G+   F FK
Sbjct: 296 IRRYTRAEYVARTRALVEAVPGLTLSTDIIVGFPGETEDDFAATLSLVREVGFKGLFGFK 355

Query: 367 YSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG 426
           YS R  TP   + + V E VK ERL  L ++      +   A VG   EVL+E   KE+G
Sbjct: 356 YSRRPHTPALKLPDDVPEGVKGERLARLFEESEALLAAHLSALVGTTQEVLVEGRDKERG 415

Query: 427 K-LVGRSPWLQSVVLNSKNH--------NIGDIIKVRITDVKISTLYGELV 468
               G + W      +   H         +G++++V I      +L  EL 
Sbjct: 416 HGGAGGALWSGRTGRHEIAHIDGAGELDLLGEVVEVSIARANKHSLQAELT 466


>gi|229820928|ref|YP_002882454.1| RNA modification enzyme, MiaB family [Beutenbergia cavernae DSM
           12333]
 gi|229566841|gb|ACQ80692.1| RNA modification enzyme, MiaB family [Beutenbergia cavernae DSM
           12333]
          Length = 549

 Score =  303 bits (777), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 174/455 (38%), Positives = 271/455 (59%), Gaps = 41/455 (9%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERV-----NSMDDA---DLIVLNTCHIREKAAE 78
           + +++ GCQMNV+DS RM  M  + G  R      N + DA   D++V+NTC +RE AA 
Sbjct: 52  YMIRTLGCQMNVHDSERMAGMLEAAGLVRAAGDGTNLLQDAAEADVVVINTCAVRENAAT 111

Query: 79  KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPE 138
           ++Y  LG++ +LK  R      L + V GC+AQ+E  +I+ ++P V+VV G      LP 
Sbjct: 112 RLYGNLGQLASLKRERP----GLQIAVGGCLAQSERTKIVEKAPWVDVVFGTHNLDALPV 167

Query: 139 LLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKR--GVTAFLTIQEGCDKFCTFCVVP 196
           LLERAR      + +  VE   E L +       KR     A++++  GC+  CTFC+VP
Sbjct: 168 LLERARH-----NAEAQVEIA-ESLQVFPSTLPTKRESAFAAWVSVSVGCNNTCTFCIVP 221

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLS 255
           + RG E  R   +V+ E   ++D G  E+TLLGQNVN++   G+  G++  F+ LL +  
Sbjct: 222 HLRGKERDRRPGEVLAEVAAVVDAGAIEVTLLGQNVNSY---GVSFGDRGAFAKLLRACG 278

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
           EI+GL R+R+T+ HP   +D +I A      +MP LH+P+QSGSDRIL++M R + + ++
Sbjct: 279 EIEGLERVRFTSPHPAAFTDDVIDAMASTPNVMPQLHMPLQSGSDRILRAMRRSYRSEKF 338

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
             I+DR+R+  PD AI++D IVGFPGET++DF AT+D+V    ++ AF+F+YSPR GT  
Sbjct: 339 LGILDRVRARIPDAAITTDIIVGFPGETEEDFAATLDVVAASRFSSAFTFQYSPRPGTSA 398

Query: 376 SNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKG---KL 428
           + + +QV  +V  E   RL+ LQ+++  ++   N A VG+ +EVLI    G++ G   +L
Sbjct: 399 ATLPDQVPADVVTERYARLVALQERISAEE---NAALVGREVEVLISAGEGRKDGATSRL 455

Query: 429 VGRSP-------WLQSVVLNSKNHNIGDIIKVRIT 456
            GR+         L + +  ++    GD++  R+T
Sbjct: 456 TGRARDNRLVHVALPASMTTAERPRPGDVVVTRVT 490


>gi|256784788|ref|ZP_05523219.1| hypothetical protein SlivT_09878 [Streptomyces lividans TK24]
 gi|289768676|ref|ZP_06528054.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Streptomyces lividans
           TK24]
 gi|289698875|gb|EFD66304.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Streptomyces lividans
           TK24]
          Length = 505

 Score =  303 bits (777), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 178/456 (39%), Positives = 264/456 (57%), Gaps = 28/456 (6%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERV--NSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + V++YGCQMNV+DS R+  +    GY R    +  DAD++V NTC +RE A  K+Y  L
Sbjct: 16  YEVRTYGCQMNVHDSERLSGLLEDAGYVRAPEGADGDADVVVFNTCAVRENADNKLYGNL 75

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           G +   K SR      + + V GC+AQ + + I++R+P V+VV G     +LP LLERAR
Sbjct: 76  GHLAPKKASRP----GMQIAVGGCLAQKDRDTIVKRAPWVDVVFGTHNIGKLPVLLERAR 131

Query: 145 FGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             +   V+   S+E     L        R+    A+++I  GC+  CTFC+VP  RG E 
Sbjct: 132 VQEEAQVEIAESLEAFPSTLPT-----RRESAYAAWVSISVGCNNTCTFCIVPALRGKEK 186

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVR 262
            R    ++ E   L+  GV EITLLGQNVNA+   G D G++  FS LL +   I GL R
Sbjct: 187 DRRPGDILAEVEALVAEGVSEITLLGQNVNAY---GSDIGDREAFSKLLRACGNINGLER 243

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+T+ HPRD +D +I A  +    MP LH+P+QSGSD +LK+M R +    Y  II+++
Sbjct: 244 VRFTSPHPRDFTDDVIAAMAETPNAMPQLHMPLQSGSDPVLKAMRRSYRQERYLGIIEKV 303

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+  P  AI++D IVGFPGET++DF  T+ +V +  +AQAF+F+YS R GTP + M  Q+
Sbjct: 304 RAAIPHAAITTDIIVGFPGETEEDFEQTLHVVREARFAQAFTFQYSKRPGTPAAEMENQI 363

Query: 383 DENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKG---KLVGRSPWL 435
            + V   + ERL+ LQ+++   +   N   VG+ +E+++ E  G++ G   +L GR+P  
Sbjct: 364 PKAVVQERYERLVALQEEISWDE---NKKQVGRTLELMVAEGEGRKDGATHRLSGRAPDN 420

Query: 436 QSVVLNSKNHNI--GDIIKVRITDVKISTLYGELVV 469
           + V     +  +  GD++ V IT      L  E  V
Sbjct: 421 RLVHFTKPDQEVRPGDVVTVEITYAAPHHLLAEGAV 456


>gi|297208061|ref|ZP_06924492.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           subsp. aureus ATCC 51811]
 gi|296887304|gb|EFH26206.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           subsp. aureus ATCC 51811]
          Length = 514

 Score =  303 bits (777), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 171/446 (38%), Positives = 266/446 (59%), Gaps = 15/446 (3%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           F +K+YGCQMN +D+  +  +  + GY+    ++ AD+I++NTC IRE A  KV+S +G 
Sbjct: 70  FLIKTYGCQMNAHDTEVIAGILEALGYQATTDINTADVILINTCAIRENAENKVFSEIGN 129

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           +++LK    KE  D+L+ V GC++Q E    +IL+    V+++ G    + LPE+LE A 
Sbjct: 130 LKHLK----KERPDILIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHHLPEILEEAY 185

Query: 145 FGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             K +V   +S E D  E L  V     R+  + A++ I  GCDKFCT+C+VP+TRG E 
Sbjct: 186 LSKAMVVEVWSKEGDVIENLPKV-----REGNIKAWVNIMYGCDKFCTYCIVPFTRGKER 240

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR    ++DE R+L   G  EITLLGQNVN++ GK L   +    DLL ++S+I  + R+
Sbjct: 241 SRRPEDIIDEVRELAREGYKEITLLGQNVNSY-GKDLQDIEYDLGDLLQAISKI-AIPRV 298

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+TTSHP D +D +I    +   ++P++HLPVQSG++ +LK M R++T   Y  ++ RI+
Sbjct: 299 RFTTSHPWDFTDHMIDVISEGGNIVPHIHLPVQSGNNAVLKIMGRKYTRESYLDLVKRIK 358

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              P++A+++D IVG+P E+++ F  T+ L D++G+  A+++ YS R GTP + M + V 
Sbjct: 359 DRIPNVALTTDIIVGYPNESEEQFEETLTLYDEVGFEHAYTYLYSQRDGTPAAKMKDNVP 418

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVLNS 442
            NVK ERL  L KK+            GQ + VL E   K+  + L G +   + V   +
Sbjct: 419 LNVKKERLQRLNKKVGHYSQIAMSKYEGQTVTVLCEGSSKKDDQVLAGYTDKNKLVNFKA 478

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
               IG +++VRI + K  +L G  V
Sbjct: 479 PKEMIGKLVEVRIDEAKQYSLNGSFV 504


>gi|15924282|ref|NP_371816.1| tRNA 2-methylthioadenosine synthase [Staphylococcus aureus subsp.
           aureus Mu50]
 gi|15926875|ref|NP_374408.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus
           aureus subsp. aureus N315]
 gi|21282904|ref|NP_645992.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus
           aureus subsp. aureus MW2]
 gi|49486131|ref|YP_043352.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus
           aureus subsp. aureus MSSA476]
 gi|148267782|ref|YP_001246725.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus
           aureus subsp. aureus JH9]
 gi|150393841|ref|YP_001316516.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus
           aureus subsp. aureus JH1]
 gi|156979613|ref|YP_001441872.1| hypothetical protein SAHV_1282 [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|253733470|ref|ZP_04867635.1| 2-methylthioadenine synthetase [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|255006079|ref|ZP_05144680.2| hypothetical protein SauraM_06400 [Staphylococcus aureus subsp.
           aureus Mu50-omega]
 gi|257795652|ref|ZP_05644631.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           A9781]
 gi|258421638|ref|ZP_05684562.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           A9719]
 gi|258434794|ref|ZP_05688868.1| tRNA 2-methylthioadenosine synthase [Staphylococcus aureus A9299]
 gi|258444630|ref|ZP_05692959.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           A8115]
 gi|258447537|ref|ZP_05695681.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           A6300]
 gi|258449379|ref|ZP_05697482.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           A6224]
 gi|258454758|ref|ZP_05702722.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           A5937]
 gi|269202909|ref|YP_003282178.1| tRNA-i(6)A37 modification enzyme MiaB [Staphylococcus aureus subsp.
           aureus ED98]
 gi|282892780|ref|ZP_06301015.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           A8117]
 gi|282927634|ref|ZP_06335250.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           A10102]
 gi|295406229|ref|ZP_06816036.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           A8819]
 gi|296274850|ref|ZP_06857357.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus
           aureus subsp. aureus MR1]
 gi|297244457|ref|ZP_06928340.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           A8796]
 gi|300912143|ref|ZP_07129586.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           subsp. aureus TCH70]
 gi|81649395|sp|Q6G9S1|MIAB_STAAS RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|81704466|sp|Q7A110|MIAB_STAAW RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|81705771|sp|Q7A5W3|MIAB_STAAN RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|81781679|sp|Q99UI1|MIAB_STAAM RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|229891002|sp|A7X1T3|MIAB_STAA1 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|229891003|sp|A6U1B1|MIAB_STAA2 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|229891004|sp|A5ISH6|MIAB_STAA9 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|13701092|dbj|BAB42387.1| conserved hypotehtical protein [Staphylococcus aureus subsp. aureus
           N315]
 gi|14247062|dbj|BAB57454.1| similar to tRNA 2-methylthioadenosine synthase [Staphylococcus
           aureus subsp. aureus Mu50]
 gi|21204343|dbj|BAB95040.1| conserved hypotehtical protein [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49244574|emb|CAG43003.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|147740851|gb|ABQ49149.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           subsp. aureus JH9]
 gi|149946293|gb|ABR52229.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           subsp. aureus JH1]
 gi|156721748|dbj|BAF78165.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|253728524|gb|EES97253.1| 2-methylthioadenine synthetase [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|257789624|gb|EEV27964.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           A9781]
 gi|257842324|gb|EEV66749.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           A9719]
 gi|257849155|gb|EEV73137.1| tRNA 2-methylthioadenosine synthase [Staphylococcus aureus A9299]
 gi|257850123|gb|EEV74076.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           A8115]
 gi|257853728|gb|EEV76687.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           A6300]
 gi|257857367|gb|EEV80265.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           A6224]
 gi|257863141|gb|EEV85905.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           A5937]
 gi|262075199|gb|ACY11172.1| tRNA-i(6)A37 modification enzyme MiaB [Staphylococcus aureus subsp.
           aureus ED98]
 gi|282590637|gb|EFB95714.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           A10102]
 gi|282764777|gb|EFC04902.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           A8117]
 gi|285816974|gb|ADC37461.1| tRNA-i(6)A37 methylthiotransferase [Staphylococcus aureus 04-02981]
 gi|294968817|gb|EFG44839.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           A8819]
 gi|297178487|gb|EFH37733.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           A8796]
 gi|300886389|gb|EFK81591.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           subsp. aureus TCH70]
 gi|312829686|emb|CBX34528.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           subsp. aureus ECT-R 2]
 gi|315131086|gb|EFT87070.1| hypothetical protein CGSSa03_06074 [Staphylococcus aureus subsp.
           aureus CGS03]
 gi|329727394|gb|EGG63850.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           subsp. aureus 21172]
          Length = 514

 Score =  303 bits (777), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 171/446 (38%), Positives = 266/446 (59%), Gaps = 15/446 (3%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           F +K+YGCQMN +D+  +  +  + GY+    ++ AD+I++NTC IRE A  KV+S +G 
Sbjct: 70  FLIKTYGCQMNAHDTEVIAGILEALGYQATTDINTADVILINTCAIRENAENKVFSEIGN 129

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           +++LK    KE  D+L+ V GC++Q E    +IL+    V+++ G    + LPE+LE A 
Sbjct: 130 LKHLK----KERPDILIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHHLPEILEEAY 185

Query: 145 FGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             K +V   +S E D  E L  V     R+  + A++ I  GCDKFCT+C+VP+TRG E 
Sbjct: 186 LSKAMVVEVWSKEGDVIENLPKV-----REGNIKAWVNIMYGCDKFCTYCIVPFTRGKER 240

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR    ++DE R+L   G  EITLLGQNVN++ GK L   +    DLL ++S+I  + R+
Sbjct: 241 SRRPEDIIDEVRELAREGYKEITLLGQNVNSY-GKDLQDIEYDLGDLLQAISKI-AIPRV 298

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+TTSHP D +D +I    +   ++P++HLPVQSG++ +LK M R++T   Y  ++ RI+
Sbjct: 299 RFTTSHPWDFTDHMIDVISEGGNIVPHIHLPVQSGNNAVLKIMGRKYTRESYLDLVKRIK 358

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              P++A+++D IVG+P E+++ F  T+ L D++G+  A+++ YS R GTP + M + V 
Sbjct: 359 DRIPNVALTTDIIVGYPNESEEQFEETLTLYDEVGFEHAYTYLYSQRDGTPAAKMKDNVP 418

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVLNS 442
            NVK ERL  L KK+            GQ + VL E   K+  + L G +   + V   +
Sbjct: 419 LNVKKERLQRLNKKVGHYSQIAMSKYEGQTVTVLCEGSSKKDDQVLAGYTDKNKLVNFKA 478

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
               IG +++VRI + K  +L G  V
Sbjct: 479 PKEMIGKLVEVRIDEAKQYSLNGSFV 504


>gi|168334526|ref|ZP_02692687.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Epulopiscium sp. 'N.t.
           morphotype B']
          Length = 474

 Score =  303 bits (777), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 170/447 (38%), Positives = 259/447 (57%), Gaps = 15/447 (3%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           FF+ ++GCQMN  DS ++E +    GY +  S   AD ++ NTC +RE A  K++  LG 
Sbjct: 35  FFIGTFGCQMNALDSEKIEGVLTKLGYTKAASEKTADFLIYNTCCVRENAELKIFGKLGA 94

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLE-RA 143
           +++    R K+  + +V + GC+ Q +   + + ++   V+++ G    Y+LPELL+ R 
Sbjct: 95  LKH----RKKKXPNFMVALCGCMMQQDVVLKTLKQKYKFVDIIFGTYNIYKLPELLQTRI 150

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             G+ ++D   + ++  E L  +     RK    + + I  GC+ FCT+C+VPY RG E 
Sbjct: 151 ETGENIIDIWETHQEIVEDLPSI-----RKHQFKSCVNIMYGCNNFCTYCIVPYVRGRER 205

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR +  + D+ + L+D+GV EI LLGQNVN++ GK L   K TF+DLL  L+ I GL R+
Sbjct: 206 SREVDDIYDQVKALVDDGVKEIMLLGQNVNSY-GKNL-ATKPTFTDLLERLASIDGLKRI 263

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+ TSHP+D S  LI +    D +   LHLP+QSGS RIL+ MNR +T  EY  ++ +I+
Sbjct: 264 RFMTSHPKDFSXQLIDSIAKHDNICKGLHLPIQSGSTRILQQMNRGYTREEYLDLVAKIK 323

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              P   +++D IVGFPGE+D DF  T+D+V +I Y  AF+F YS R GTP + M  QVD
Sbjct: 324 KAIPSATLTTDIIVGFPGESDSDFADTLDVVTQIQYLSAFTFIYSKRTGTPAATMENQVD 383

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GRSPWLQSVVLNS 442
           E+V   R   L   +      F  A +G   E+L+E   K    ++ GR+     V + +
Sbjct: 384 EDVIKARFNQLVAAVNTIAADFMAAQIGNTYEILLEDSSKNDATMLSGRTDTGILVHVKA 443

Query: 443 KNHNIGDIIKVRITDVKISTLYGELVV 469
             + IG+ + V+IT+ K   L GE+ V
Sbjct: 444 PLNFIGEFVTVQITNSKTHYLVGEIKV 470


>gi|297156736|gb|ADI06448.1| adenosine tRNA methylthiotransferase [Streptomyces bingchenggensis
           BCW-1]
          Length = 497

 Score =  303 bits (776), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 181/457 (39%), Positives = 266/457 (58%), Gaps = 32/457 (7%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGY----ERVNSMDDA--DLIVLNTCHIREKAAEKV 80
           + V++YGCQMNV+DS R+  +    GY    E V   D+A  D++V NTC +RE A  ++
Sbjct: 4   YEVRTYGCQMNVHDSERLSGLLEEAGYVRAPEGVGEGDEAFADVVVFNTCAVRENADNRL 63

Query: 81  YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140
           Y  LGR+  +K  R      + + V GC+AQ + + I++++P V+VV G      LP LL
Sbjct: 64  YGNLGRLAPIKARRP----GMQIAVGGCLAQKDRDTIVKKAPWVDVVFGTHNIGSLPVLL 119

Query: 141 ERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           ERAR  +   V+   S+E     L        R+    A+++I  GC+  CTFC+VP  R
Sbjct: 120 ERARIQEEAQVEIAESLEAFPSTLPT-----RRESAYAAWVSISVGCNNTCTFCIVPALR 174

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIK 258
           G E  R    ++ E   L+  GV EITLLGQNVNA+   G D G++  FS LL +   + 
Sbjct: 175 GKEKDRRPGDILAEVETLVAEGVSEITLLGQNVNAY---GSDIGDREAFSKLLRACGNVS 231

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           GL R+R+T+ HPRD +D +I A  + + +MP LH+P+QSGSD +LK+M R +    Y  I
Sbjct: 232 GLERVRFTSPHPRDFTDDVIAAMAETENVMPQLHMPLQSGSDTVLKAMRRSYRQERYLGI 291

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           I+++R+  PD AIS+D IVGFPGETD DF  T+ +V +  +AQAF+F+YS R GTP + M
Sbjct: 292 IEKVRAAMPDAAISTDIIVGFPGETDADFEQTLHVVREARFAQAFTFQYSKRPGTPAAEM 351

Query: 379 LEQVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKG---KLVGR 431
             QV + V   + ERL+ LQ+++  ++   N   VG+ +EVL+ E  G++ G   +L GR
Sbjct: 352 DGQVPKAVVQERYERLVALQEEISWEE---NKKQVGRTVEVLVAEGEGRKDGATHRLSGR 408

Query: 432 SPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGE 466
           +P  + V        +  GD++ V IT      L  E
Sbjct: 409 APDNRLVHFARPEERVRPGDVVTVDITYAAPHHLLAE 445


>gi|172040556|ref|YP_001800270.1| hypothetical protein cur_0876 [Corynebacterium urealyticum DSM
           7109]
 gi|229890501|sp|B1VDD8|MIAB_CORU7 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|171851860|emb|CAQ04836.1| unnamed protein product [Corynebacterium urealyticum DSM 7109]
          Length = 540

 Score =  303 bits (776), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 168/477 (35%), Positives = 276/477 (57%), Gaps = 44/477 (9%)

Query: 8   IGVAHMVSQIVDQCIVPQR-----FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDA 62
           +G AH+   +  +  V ++     + V+++GCQMNV+DS R+  +    GY+   + ++ 
Sbjct: 19  VGSAHVTHAMKKKTSVSEQPEQRTYEVRTFGCQMNVHDSERLSGLLEDSGYQPAANGEEP 78

Query: 63  DLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSP 122
           D++V NTC +RE A  ++Y  L  ++ +K+        + + V GC+AQ + + ++ R+P
Sbjct: 79  DVLVFNTCAVRENADNRLYGTLAMVKPMKD----RNPGMQIAVGGCMAQKDKDAVVDRAP 134

Query: 123 IVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTI 182
            V+VV G      LP LLER+   +R    +  + D  E    V     R+   + ++++
Sbjct: 135 WVDVVFGTHNIGSLPTLLERSAHNQRA---EVEILDSLEEFPSVLPA-KRESAYSGWVSV 190

Query: 183 QEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW----RGK 238
             GC+  CTFC+VP  RG E  R   +++ E + L+D GV E+TLLGQNVNA+      +
Sbjct: 191 SVGCNNTCTFCIVPSLRGKEQDRRPGEILAEVQALVDQGVQEVTLLGQNVNAYGVNFADE 250

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
            L  ++  F+ LL +  EI+GL RLR+T+ HP + +D +I A  +   + P LH+P+QSG
Sbjct: 251 DLPRDRGAFAKLLRACGEIEGLERLRFTSPHPAEFTDDVIDAMAETPNVCPQLHMPLQSG 310

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           SDRILK M R + + ++  I+D++R   P  AI++D IVGFPGET++DF+AT+D+V+K  
Sbjct: 311 SDRILKEMRRSYRSKKFLGILDKVRERIPHAAITTDIIVGFPGETEEDFQATLDVVEKAR 370

Query: 359 YAQAFSFKYSPRLGTPGSNMLEQVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIE 415
           ++ AF+F+YSPR GTP + M +Q+ + V   + ERL+ LQ+++   Q   N   VG   E
Sbjct: 371 FSCAFTFQYSPRPGTPAATMPDQIPKAVVQERYERLIALQERI---QAEDNKELVGTTQE 427

Query: 416 VLIEKHGKEK-------------GKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVK 459
           +L+++ G  K             G+LV  +P        S++   GDI++V ITD +
Sbjct: 428 LLVQETGGRKDAQRHRMSGRARDGRLVHFTP--------SEDVRPGDIVEVTITDAR 476


>gi|251771426|gb|EES52005.1| TRNA-i(6)A37 modification enzyme (MiaB) [Leptospirillum
           ferrodiazotrophum]
          Length = 452

 Score =  303 bits (776), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 164/412 (39%), Positives = 244/412 (59%), Gaps = 11/412 (2%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           + ++++GCQMNV+DS RM  +    GY   +  + A LI++NTC +R+KA +K  S LGR
Sbjct: 18  YHIRTFGCQMNVHDSERMAGILAEAGYRSTDDPEAASLIIVNTCTVRDKADQKALSDLGR 77

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           +R LK    K  G+ ++ V GC+A+ E E + R  P +++V GP     L  +++R R  
Sbjct: 78  LRLLK----KGEGEKILAVTGCMAEREQERLHRIMPEIDLVAGPAQVRNLLPMIDRLRAE 133

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           KR     + +   F+   +      R  GVTA +T+QEGCDK C++CVVP TRG E SR 
Sbjct: 134 KR-----FQLGRDFDLPEMTTPPAIRPPGVTALVTVQEGCDKSCSYCVVPRTRGPERSRP 188

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
           ++ +V E R L+  G  E+TLLGQNVN +     +GE   F+DLL +L  ++GL+R+R+T
Sbjct: 189 IASIVSEVRGLVSQGYREVTLLGQNVNGYGKGAPEGEG--FADLLLALDRVEGLLRIRFT 246

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
           TSHP D+    I A      +MP+LHLPVQSGSDR+L+ M R +T  EYR+ I  +R+  
Sbjct: 247 TSHPSDLDLPTIGAMARSSKVMPHLHLPVQSGSDRMLRLMERGYTLEEYREKIRHLRAAI 306

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           PD+A+++D IVGF  E+++DF+ T++ V +  +  AF F YSPR GTP        D +V
Sbjct: 307 PDVALTTDLIVGFCEESEEDFQRTLEAVREFRFDGAFCFIYSPRPGTPAYGREGLPDRSV 366

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSV 438
             +R   L   L    +  N   +G   E+L+E+  +      GRSP  ++V
Sbjct: 367 SLDRFRRLDDLLTGMVLEKNRGRIGATEEILVERTDEASRTFSGRSPHFRTV 418


>gi|242373585|ref|ZP_04819159.1| 2-methylthioadenine synthetase [Staphylococcus epidermidis
           M23864:W1]
 gi|242348948|gb|EES40550.1| 2-methylthioadenine synthetase [Staphylococcus epidermidis
           M23864:W1]
          Length = 514

 Score =  303 bits (776), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 171/446 (38%), Positives = 265/446 (59%), Gaps = 15/446 (3%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           F +K+YGCQMN +D+  M  +  + GY   + ++ AD+I++NTC IRE A  KV+S +G 
Sbjct: 70  FLIKTYGCQMNAHDTEVMAGILKALGYSATSDINQADVILINTCAIRENAENKVFSEIGN 129

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           +++LK    KE  + L+ V GC++Q E    +IL+    V+++ G    + LPE+LE A 
Sbjct: 130 LKHLK----KERPECLIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHHLPEILEEAY 185

Query: 145 FGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             K +V   +S E D  E L  V     R+  + A++ I  GCDKFCT+C+VP+TRG E 
Sbjct: 186 LSKAMVVEVWSKEGDVIENLPKV-----REGSIKAWVNIMYGCDKFCTYCIVPFTRGKER 240

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR    +++E R+L   G  EITLLGQNVN++ GK ++G      DLL  +S+I  + R+
Sbjct: 241 SRRPEDIINEVRELAREGYQEITLLGQNVNSY-GKDIEGLDYGLGDLLEDISKID-IPRV 298

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+TTSHP D +D +I+   +   ++P++HLPVQSG++ +LK M R++T   Y  ++ RI+
Sbjct: 299 RFTTSHPWDFTDRMIEVIANGGNIVPHIHLPVQSGNNAVLKIMGRKYTRESYLDLVSRIK 358

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           +  PDIA+++D IVG+P ET++ F  T+ L D++ +  A+++ YS R GTP + M + V 
Sbjct: 359 NAIPDIALTTDIIVGYPNETEEQFEETLSLYDEVEFEHAYTYLYSQRDGTPAAKMKDNVP 418

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVLNS 442
             VK ERL  L KK+ E          G+I+ VL E   K+    L G +   + V   +
Sbjct: 419 TEVKKERLQRLNKKVGEYSQKAMSQYEGEIVTVLCEGSSKKDDTVLAGYTAKNKLVNFKA 478

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
               IG ++ V+I + K  +L G  V
Sbjct: 479 PKEMIGKLVDVKIDEAKQYSLNGTFV 504


>gi|29348604|ref|NP_812107.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|253569055|ref|ZP_04846465.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|81443605|sp|Q8A2W0|MIAB_BACTN RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|29340509|gb|AAO78301.1| conserved hypothetical protein [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|251841074|gb|EES69155.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 455

 Score =  303 bits (776), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 170/451 (37%), Positives = 267/451 (59%), Gaps = 20/451 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F+++YGCQMNV DS  +  +    GY    ++++AD + +NTC IR+ A +K+ + L
Sbjct: 18  KKLFIETYGCQMNVADSEVIASVMQMAGYSVAETLEEADAVFMNTCSIRDNAEQKILNRL 77

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
               +LK    K+   L+V V GC+A+   ++++     V++VVGP  Y  LPEL+    
Sbjct: 78  EFFHSLK----KKKKALIVGVLGCMAERVKDDLITNHH-VDLVVGPDAYLTLPELIAAVE 132

Query: 145 FGKRVVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            G++ ++ D S  + +  +  S + G +     ++ F++I  GC+ FCT+C+VPYTRG E
Sbjct: 133 AGEKAINVDLSTTETYRDVIPSRICGNH-----ISGFVSIMRGCNNFCTYCIVPYTRGRE 187

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR +  +++E   L+  G  E+TLLGQNVN++R +   GE  TF  LL  ++E    VR
Sbjct: 188 RSRDVESILNEVADLVAKGYKEVTLLGQNVNSYRFEKPTGEVVTFPMLLRMVAEAAPGVR 247

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP+DMSD  ++    +  +  ++HLPVQSGS RILK MNR++T   Y   +  I
Sbjct: 248 IRFTTSHPKDMSDETLEVIAQVPNVCKHIHLPVQSGSSRILKLMNRKYTREWYLDRVAAI 307

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE-Q 381
           + + PD  +++D   GF  ET++D + ++ L+++ GY  AF FKYS R GT  S  LE  
Sbjct: 308 KRIIPDCGLTTDIFSGFHSETEEDHQLSLSLMEECGYDAAFMFKYSERPGTYASKHLEDN 367

Query: 382 VDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQS 437
           V E+VK  RL   + LQ +L  +    N  C+G+  EVL+E   K  + +L GR+   + 
Sbjct: 368 VPEDVKVRRLNEIIALQNRLSAES---NQRCIGKTYEVLVEGVSKRSRDQLFGRTEQNRV 424

Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           VV +   H IGD + VR+T+   +TL GE V
Sbjct: 425 VVFDRGTHRIGDFVNVRVTEASSATLKGEEV 455


>gi|53711319|ref|YP_097311.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacteroides
           fragilis YCH46]
 gi|60679624|ref|YP_209768.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacteroides
           fragilis NCTC 9343]
 gi|253564573|ref|ZP_04842030.1| SAM/TRAM family methylase [Bacteroides sp. 3_2_5]
 gi|265764766|ref|ZP_06093041.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacteroides sp. 2_1_16]
 gi|81317302|sp|Q5LJ70|MIAB_BACFN RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|81384036|sp|Q650P7|MIAB_BACFR RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|52214184|dbj|BAD46777.1| conserved hypothetical protein [Bacteroides fragilis YCH46]
 gi|60491058|emb|CAH05806.1| putative SAM/TRAM family methylase protein [Bacteroides fragilis
           NCTC 9343]
 gi|251948349|gb|EES88631.1| SAM/TRAM family methylase [Bacteroides sp. 3_2_5]
 gi|263254150|gb|EEZ25584.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacteroides sp. 2_1_16]
 gi|301161106|emb|CBW20643.1| putative SAM/TRAM family methylase protein [Bacteroides fragilis
           638R]
          Length = 457

 Score =  303 bits (776), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 169/451 (37%), Positives = 266/451 (58%), Gaps = 20/451 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F+++YGCQMNV DS  +  +    GY    ++++AD + +NTC IR+ A +K+ + L
Sbjct: 18  KKLFIETYGCQMNVADSEVIASVMQMAGYSVAETLEEADAVFMNTCSIRDNAEQKILNRL 77

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
               ++K    K+   L+V V GC+A+   ++++     V++VVGP  Y  LPEL+    
Sbjct: 78  EFFHSMK----KKKKHLIVGVLGCMAERVKDDLIEHHH-VDLVVGPDAYLTLPELIASVE 132

Query: 145 FGKRVVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            G++ ++ + S  + +  +  S + G +     ++ F++I  GC+ FCT+C+VPYTRG E
Sbjct: 133 AGEKAMNVELSTTETYRDVIPSRICGNH-----ISGFVSIMRGCNNFCTYCIVPYTRGRE 187

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR +  +++E   L+  G  EITLLGQNVN++R +   GE  TF  LL  ++E    +R
Sbjct: 188 RSRDVESILNEVADLVSKGYKEITLLGQNVNSYRFEKEGGEVVTFPMLLRLVAEAAPGIR 247

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP+DMSD  ++    +  +  ++HLPVQSGS RILK MNR++T   Y   +  I
Sbjct: 248 VRFTTSHPKDMSDETLEVIAQVPNVCKHIHLPVQSGSSRILKLMNRKYTREWYLDRVAAI 307

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE-Q 381
           + + PD  +++D   GF  ET++D R ++ L++  GY  AF FKYS R GT  S  LE  
Sbjct: 308 KRIVPDCGLTTDIFSGFHSETEEDHRESLSLMEACGYDAAFMFKYSERPGTYASKHLEDN 367

Query: 382 VDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQS 437
           V E +K  RL   + LQ +L  +    N+ C+G+  EVL+E   K  + +L GR+   + 
Sbjct: 368 VPEEIKVRRLNEIIALQNRLSAES---NNRCIGKTYEVLVEGVSKRSRDQLFGRTEQNRV 424

Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           VV +   H IGD + VRIT+   +TL GE V
Sbjct: 425 VVFDRGTHRIGDFVNVRITEASSATLKGEEV 455


>gi|183981993|ref|YP_001850284.1| hypothetical protein MMAR_1979 [Mycobacterium marinum M]
 gi|229890404|sp|B2HL08|MIAB2_MYCMM RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB 2; AltName: Full=tRNA-i(6)A37 methylthiotransferase
           2
 gi|183175319|gb|ACC40429.1| conserved hypothetical protein [Mycobacterium marinum M]
          Length = 532

 Score =  303 bits (776), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 171/453 (37%), Positives = 264/453 (58%), Gaps = 24/453 (5%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           + V++YGCQMNV+DS RM  +  + GY R     DAD++V NTC +RE A  K+Y  L  
Sbjct: 26  YQVRTYGCQMNVHDSERMAGLLEAAGYRRAAEGTDADVVVFNTCAVRENADNKLYGNLSH 85

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           +      R +   D+ + V GC+AQ + + +LR++P V+VV G      LP LL+RAR  
Sbjct: 86  L----APRKRTSPDMQIAVGGCLAQKDRDALLRKAPWVDVVFGTHNIGSLPALLDRARH- 140

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
            RV   + +   +    S+      R+    A+++I  GC+  CTFC+VP  RG EI RS
Sbjct: 141 NRVAQVEIAEALQQFPSSLPSA---RESAYAAWVSISVGCNNTCTFCIVPSLRGKEIDRS 197

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAW----RGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            + ++ E + L+D GV EITLLGQNVNA+        L   +  F++LL +  +I GL R
Sbjct: 198 PADILAEVQSLVDTGVVEITLLGQNVNAYGVSFADPALPRNRGAFAELLRACGDIDGLER 257

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+T+ HP + +D +I+A      + P LH+P+QSGSDR+L++M R + A  Y  II+R+
Sbjct: 258 VRFTSPHPAEFTDDVIEAMAQTPNVCPALHMPLQSGSDRVLRAMRRSYRAERYLGIIERV 317

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+  P  AI++D IVGFPGET+ DF AT+D+V +  ++ AF+F+YS R GTP + +  Q+
Sbjct: 318 RAAMPHAAITTDLIVGFPGETEQDFAATLDVVRQARFSAAFTFQYSKRPGTPAAELDGQL 377

Query: 383 DENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK----GKLVGRSPWL 435
            + V   + ERL+ LQ+++    +  N A VGQ +E+L+      K     ++ GR+   
Sbjct: 378 PKAVVQERYERLVELQEQI---SLEGNRAIVGQRVELLVATGEGRKDTLTARMSGRARDG 434

Query: 436 QSVVLNSKNHNI--GDIIKVRITDVKISTLYGE 466
           + V   + +  +  GDI+ V +TD     L  +
Sbjct: 435 RLVHFRAGDGPVRPGDIVTVEVTDAAPHHLIAD 467


>gi|302537334|ref|ZP_07289676.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Streptomyces sp. C]
 gi|302446229|gb|EFL18045.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Streptomyces sp. C]
          Length = 506

 Score =  303 bits (776), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 175/452 (38%), Positives = 269/452 (59%), Gaps = 26/452 (5%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERV--NSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + V++YGCQMNV+DS R+  +    GY R    S  DAD++V NTC +RE A  K+Y  L
Sbjct: 18  YEVRTYGCQMNVHDSERLSGLLEDAGYVRAPEGSDGDADVVVFNTCAVRENADNKLYGNL 77

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR+  +K  R      + + V GC+AQ + + I++++P V+VV G     +LP LLERAR
Sbjct: 78  GRLAPMKTKRP----GMQIAVGGCLAQKDRDTIVKKAPWVDVVFGTHNIGKLPVLLERAR 133

Query: 145 FGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             +   ++   S+E     L        R+    A+++I  GC+  CTFC+VP  RG E 
Sbjct: 134 VQEEAQIEIAESLEAFPSTLPT-----RRESAYAAWVSISVGCNNTCTFCIVPALRGKEE 188

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
            R    ++ E   L+  GV EITLLGQNVNA+ G  L G++  FS LL +  +I+GL R+
Sbjct: 189 DRRPGDILAEVEALVAEGVSEITLLGQNVNAY-GSDL-GDREAFSKLLRACGQIEGLERV 246

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+T+ HP+D +D +I A  +   +MP LH+P+QSGSD IL++M R +    +  II+++R
Sbjct: 247 RFTSPHPKDFTDDVIAAMAETPNVMPQLHMPLQSGSDPILRAMRRSYRQERFLGIIEKVR 306

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           +  P  AIS+D IVGFPGET++DF+ TM +V +  +A AF+F+YS R GTP ++M  Q+ 
Sbjct: 307 AAIPHAAISTDIIVGFPGETEEDFQQTMHVVREARFAGAFTFQYSKRPGTPAADMEGQIP 366

Query: 384 ENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKG---KLVGRSPWLQ 436
           + V  +   RL+ LQ+++  ++   N   VG+ +EV++ E  G++ G   +L GR+P  +
Sbjct: 367 KEVVQDRYMRLVALQEEISWEE---NKKQVGRTLEVMVAEGEGRKDGATARLSGRAPDNR 423

Query: 437 SVVLNSKNHNI--GDIIKVRITDVKISTLYGE 466
            V     + ++  GD++ V IT      L  E
Sbjct: 424 LVHFTKPDEDVRPGDVVTVEITYAAPHHLLAE 455


>gi|22298858|ref|NP_682105.1| hypothetical protein tlr1315 [Thermosynechococcus elongatus BP-1]
 gi|81743104|sp|Q8DJB2|MIAB_THEEB RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|22295039|dbj|BAC08867.1| tlr1315 [Thermosynechococcus elongatus BP-1]
          Length = 450

 Score =  303 bits (776), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 177/453 (39%), Positives = 270/453 (59%), Gaps = 23/453 (5%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           +P+R+++ ++GCQMN  DS RM  +  + G E     D+AD+++ NTC IR+ A +K+YS
Sbjct: 1   MPRRYYITTFGCQMNKADSERMAGILEAMGLELAAEPDEADVLLYNTCTIRDNAEQKLYS 60

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
           +LGR    +  R  +  +L ++VAGCVAQ EGE++LRR P V++V+GPQ   RL ELLE+
Sbjct: 61  YLGR----QAKRKHQDPNLTLIVAGCVAQQEGEQLLRRVPEVDLVMGPQYANRLGELLEQ 116

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKR--GVTAFLTIQEGCDKFCTFCVVPYTRG 200
              G +VV T        E L IV+     +R   VTA++ +  GC++ CT+CVVP  RG
Sbjct: 117 VWNGSQVVAT--------EPLQIVEDITKPRRDSTVTAWVNVIYGCNERCTYCVVPGVRG 168

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG------EKCTFSDLLYSL 254
            E SR    +  E  +L   G  E+TLLGQN++A+ G+ L G       + TF+DLLY +
Sbjct: 169 QEQSRRPEAIRAEIEELAAQGYKEVTLLGQNIDAY-GRDLPGITPEGRRQHTFTDLLYYI 227

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
            ++ G+ R+R+ TSHPR  ++ LI+A  +L  +  + H+P QSG + ILK+M R +T   
Sbjct: 228 HDVAGIERIRFATSHPRYFTERLIRACAELPKVCKHFHIPFQSGDNEILKAMARGYTRER 287

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
           Y  II+ IR   PD AIS+D IVGFPGET++ F+ T+DLV  +G+ Q  +  YSPR  TP
Sbjct: 288 YLHIIETIRRYMPDAAISADAIVGFPGETEEQFQRTLDLVAAVGFDQLNTAAYSPRPNTP 347

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSP 433
            +    QV E +K +RL  L   + +     +   +G+   VL+E  + K+  ++ GR+ 
Sbjct: 348 AATWENQVPEAIKEDRLQRLNHLVAKIAGDRSQRYLGREEVVLVEGVNPKDAQQVYGRTD 407

Query: 434 WLQSVVLNSKNHNI-GDIIKVRITDVKISTLYG 465
             +   L      + G +++VRIT+ +  +L G
Sbjct: 408 GNRLTYLPGDIETLRGQLVRVRITEARAFSLSG 440


>gi|326333227|ref|ZP_08199474.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Nocardioidaceae bacterium
           Broad-1]
 gi|325948871|gb|EGD40964.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Nocardioidaceae bacterium
           Broad-1]
          Length = 500

 Score =  303 bits (776), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 172/454 (37%), Positives = 263/454 (57%), Gaps = 23/454 (5%)

Query: 13  MVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHI 72
           M + I       + + V++YGCQMNV+DS R+  +    GY +      AD++V NTC +
Sbjct: 1   MTTSIASGSATARTYEVRTYGCQMNVHDSERLSGLLEDAGYLKATEGTQADVVVFNTCAV 60

Query: 73  REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT 132
           RE A  K+Y  L  +  +K +      DL + V GC+AQ +   I  ++P V+VV G   
Sbjct: 61  RENADNKLYGNLSHLAPIKEA----NPDLQIAVGGCLAQKDRATITEKAPYVDVVFGTHN 116

Query: 133 YYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKR--GVTAFLTIQEGCDKFC 190
              LP LLERAR     V  +  VE   E L +       KR     A++++  GC+  C
Sbjct: 117 IGSLPVLLERAR-----VQEEAQVE-ILESLEVFPSTLPTKRESAYAAWVSVSVGCNNTC 170

Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSD 249
           TFC+VP  RG E  R   +++ E   L+  GV E+TLLGQNVNA+   G++ G++  FS 
Sbjct: 171 TFCIVPSLRGKEKDRRPGEILAEIEALVAEGVTEVTLLGQNVNAY---GVEFGDRQAFSK 227

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
           LL +  EI+GL R+R+T+ HP + +D +I+A  +   +MP LH+P+QSGSDR+LK+M R 
Sbjct: 228 LLRACGEIEGLERVRFTSPHPAEFTDDVIEAMAETPNVMPSLHMPLQSGSDRVLKAMRRS 287

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369
           + + ++  II+R+R   P  AI++D IVGFPGET++DF+AT+D+V +  +A AF+F+YS 
Sbjct: 288 YRSTKFLGIIERVREAIPHAAITTDIIVGFPGETEEDFQATLDVVRESRFASAFTFQYSK 347

Query: 370 RLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGK---EK 425
           R GTP +++ +Q+   V  +R   L   + E     N   VG+ +E+++ E  G+   E 
Sbjct: 348 RPGTPAADLPDQISPEVVKDRYGRLVDLVNEIAYEENKKNVGRTLELMVAEGEGRKDAET 407

Query: 426 GKLVGRSPWLQSVVLNSKNHN---IGDIIKVRIT 456
            +L GR+P  + V  N+        GD++KV IT
Sbjct: 408 HRLSGRAPDNRLVHFNAAGAEGVRPGDMVKVEIT 441


>gi|57651862|ref|YP_186168.1| tRNA-i(6)A37 modification enzyme MiaB [Staphylococcus aureus subsp.
           aureus COL]
 gi|87160782|ref|YP_493882.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           subsp. aureus USA300_FPR3757]
 gi|88195002|ref|YP_499802.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus
           aureus subsp. aureus NCTC 8325]
 gi|151221413|ref|YP_001332235.1| tRNA-i(6)A37 modification enzyme MiaB [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|161509458|ref|YP_001575117.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus
           aureus subsp. aureus USA300_TCH1516]
 gi|221142526|ref|ZP_03567019.1| 2-methylthioadenine synthetase [Staphylococcus aureus subsp. aureus
           str. JKD6009]
 gi|258452591|ref|ZP_05700597.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           A5948]
 gi|262048179|ref|ZP_06021066.1| hypothetical protein SAD30_1955 [Staphylococcus aureus D30]
 gi|262051352|ref|ZP_06023575.1| hypothetical protein SA930_2074 [Staphylococcus aureus 930918-3]
 gi|282920536|ref|ZP_06328257.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           A9765]
 gi|284024285|ref|ZP_06378683.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus
           aureus subsp. aureus 132]
 gi|294848288|ref|ZP_06789035.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           A9754]
 gi|304381143|ref|ZP_07363796.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           subsp. aureus ATCC BAA-39]
 gi|81694614|sp|Q5HGD9|MIAB_STAAC RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|123407056|sp|Q2FZ02|MIAB_STAA8 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|123486136|sp|Q2FHE6|MIAB_STAA3 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|229891005|sp|A6QGJ1|MIAB_STAAE RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|229891006|sp|A8Z1W3|MIAB_STAAT RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|57286048|gb|AAW38142.1| tRNA-i(6)A37 modification enzyme MiaB [Staphylococcus aureus subsp.
           aureus COL]
 gi|87126756|gb|ABD21270.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           subsp. aureus USA300_FPR3757]
 gi|87202560|gb|ABD30370.1| tRNA-i(6)A37 modification enzyme MiaB [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|150374213|dbj|BAF67473.1| tRNA-i(6)A37 modification enzyme MiaB [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|160368267|gb|ABX29238.1| 2-methylthioadenine synthetase [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|257859809|gb|EEV82651.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           A5948]
 gi|259160727|gb|EEW45748.1| hypothetical protein SA930_2074 [Staphylococcus aureus 930918-3]
 gi|259163745|gb|EEW48300.1| hypothetical protein SAD30_1955 [Staphylococcus aureus D30]
 gi|282594198|gb|EFB99185.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           A9765]
 gi|294825088|gb|EFG41510.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           A9754]
 gi|302751114|gb|ADL65291.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus
           aureus subsp. aureus str. JKD6008]
 gi|304340126|gb|EFM06067.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           subsp. aureus ATCC BAA-39]
 gi|315198534|gb|EFU28863.1| 2-methylthioadenine synthetase [Staphylococcus aureus subsp. aureus
           CGS01]
 gi|320143843|gb|EFW35615.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           subsp. aureus MRSA177]
 gi|329313962|gb|AEB88375.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Staphylococcus aureus subsp. aureus T0131]
 gi|329727801|gb|EGG64252.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           subsp. aureus 21189]
          Length = 514

 Score =  303 bits (776), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 170/446 (38%), Positives = 266/446 (59%), Gaps = 15/446 (3%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           F +K+YGCQMN +D+  +  +  + GY+    ++ AD+I++NTC IRE A  KV+S +G 
Sbjct: 70  FLIKTYGCQMNAHDTEVIAGILEALGYQATTDINTADVILINTCAIRENAENKVFSEIGN 129

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           +++LK    KE  D+L+ V GC++Q E    +IL+    V+++ G    + LPE+LE A 
Sbjct: 130 LKHLK----KERPDILIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHHLPEILEEAY 185

Query: 145 FGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             K +V   +S E D  E L  V     R+  + A++ I  GCDKFCT+C+VP+TRG E 
Sbjct: 186 LSKAMVVEVWSKEGDVIENLPKV-----REGNIKAWVNIMYGCDKFCTYCIVPFTRGKER 240

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR    ++DE R+L   G  EITLLGQNVN++ GK L   +    DLL ++S+I  + R+
Sbjct: 241 SRRPEDIIDEVRELAREGYKEITLLGQNVNSY-GKDLQDIEYDLGDLLQAISKI-AIPRV 298

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+TTSHP D +D +I    +   ++P++HLPVQSG++ +LK M R++T   Y  ++ RI+
Sbjct: 299 RFTTSHPWDFTDHMIDVISEGGNIVPHIHLPVQSGNNAVLKIMGRKYTRESYLDLVKRIK 358

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              P++A+++D IVG+P E+++ F  T+ L D++G+  A+++ YS R GTP + M + V 
Sbjct: 359 DRIPNVALTTDIIVGYPNESEEQFEETLTLYDEVGFEHAYTYLYSQRDGTPAAKMKDNVP 418

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVLNS 442
            NVK ERL  L KK+            GQ + VL E   K+  + L G +   + V   +
Sbjct: 419 LNVKKERLQRLNKKVGHYSQIAMSKYEGQTVTVLCEGSSKKDDQVLAGYTDKNKLVNFKA 478

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
               IG +++VRI + K  +L G  +
Sbjct: 479 PKEMIGKLVEVRIDEAKQYSLNGSFI 504


>gi|21224132|ref|NP_629911.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Streptomyces
           coelicolor A3(2)]
 gi|81344644|sp|O69963|MIAB_STRCO RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|2995295|emb|CAA18324.1| conserved hypothetical protein SC4H2.08 [Streptomyces coelicolor
           A3(2)]
          Length = 505

 Score =  303 bits (776), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 178/456 (39%), Positives = 264/456 (57%), Gaps = 28/456 (6%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERV--NSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + V++YGCQMNV+DS R+  +    GY R    +  DAD++V NTC +RE A  K+Y  L
Sbjct: 16  YEVRTYGCQMNVHDSERLSGLLEDAGYVRAPEGADGDADVVVFNTCAVRENADNKLYGNL 75

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           G +   K SR      + + V GC+AQ + + I++R+P V+VV G     +LP LLERAR
Sbjct: 76  GHLAPKKASRP----GMQIAVGGCLAQKDRDTIVKRAPWVDVVFGTHNIGKLPVLLERAR 131

Query: 145 FGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             +   V+   S+E     L        R+    A+++I  GC+  CTFC+VP  RG E 
Sbjct: 132 VQEEAQVEIAESLEAFPSTLPT-----RRESAYAAWVSISVGCNNTCTFCIVPALRGKEK 186

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVR 262
            R    ++ E   L+  GV EITLLGQNVNA+   G D G++  FS LL +   I GL R
Sbjct: 187 DRRPGDILAEVEALVAEGVSEITLLGQNVNAY---GSDIGDREAFSKLLRACGNIDGLER 243

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+T+ HPRD +D +I A  +    MP LH+P+QSGSD +LK+M R +    Y  II+++
Sbjct: 244 VRFTSPHPRDFTDDVIAAMAETPNAMPQLHMPLQSGSDPVLKAMRRSYRQERYLGIIEKV 303

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+  P  AI++D IVGFPGET++DF  T+ +V +  +AQAF+F+YS R GTP + M  Q+
Sbjct: 304 RAAIPHAAITTDIIVGFPGETEEDFEQTLHVVREARFAQAFTFQYSKRPGTPAAEMENQI 363

Query: 383 DENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKG---KLVGRSPWL 435
            + V   + ERL+ LQ+++   +   N   VG+ +E+++ E  G++ G   +L GR+P  
Sbjct: 364 PKAVVQERYERLVALQEEISWDE---NKKQVGRTLELMVAEGEGRKDGATHRLSGRAPDN 420

Query: 436 QSVVLNSKNHNI--GDIIKVRITDVKISTLYGELVV 469
           + V     +  +  GD++ V IT      L  E  V
Sbjct: 421 RLVHFTKPDQEVRPGDVVTVEITYAAPHHLLAEGAV 456


>gi|271963754|ref|YP_003337950.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Streptosporangium roseum
           DSM 43021]
 gi|270506929|gb|ACZ85207.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Streptosporangium roseum
           DSM 43021]
          Length = 502

 Score =  303 bits (775), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 175/441 (39%), Positives = 264/441 (59%), Gaps = 26/441 (5%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           + V++YGCQMNV+DS R+  +    GY  V   + AD++V NTC +RE A  K+Y  LG 
Sbjct: 15  YEVRTYGCQMNVHDSERLSGLLEDAGYVPVPEGEAADVVVFNTCAVRENADNKLYGNLG- 73

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
             +L+ S++   G + + V GC+AQ +  EI+R++P V+VV G      LP LLERAR  
Sbjct: 74  --HLRPSKVSNPG-MQIAVGGCLAQKDQGEIVRKAPWVDVVFGTHNIGSLPVLLERARVR 130

Query: 147 KRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           +   V+   S+E     L        R+    A++++  GC+  CTFC+VP  RG E  R
Sbjct: 131 QEAQVEIKESLETFPSTLPT-----KRESAYAAWVSVSVGCNNTCTFCIVPALRGKEKDR 185

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLR 264
               +++E R L+D GV EITLLGQNVN +   G++ G++  F  LL +  +I GL R+R
Sbjct: 186 RPGDILNEVRTLVDQGVLEITLLGQNVNTY---GVEFGDRLAFGKLLRACGDIDGLERVR 242

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +T+ HP   +D +I A  +   +M  LH+P+QSGSDRILK+M R + A  Y  II+R+R+
Sbjct: 243 FTSPHPAAFTDDVIAAMAETPNVMHQLHMPLQSGSDRILKAMRRSYRAERYLGIIERVRA 302

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             PD AIS+D IVGFPGET++DF+ T+D+V +  +A AF+F+YS R GTP + M +Q+ +
Sbjct: 303 AMPDAAISTDIIVGFPGETEEDFQGTLDVVRESRFANAFTFQYSIRPGTPAATMDDQIPK 362

Query: 385 NV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKE---KGKLVGRSP--WL 435
            V   + ERL+ LQ ++  ++   N   VG+ +EVL+ E  G++     +L GR+    L
Sbjct: 363 EVVQERYERLVALQTEISWEE---NKKQVGRTLEVLVAEGEGRKDEATRRLSGRASDNRL 419

Query: 436 QSVVLNSKNHNIGDIIKVRIT 456
                  +    GD++ V +T
Sbjct: 420 VHFAPGEETPRPGDMVAVEVT 440


>gi|327439595|dbj|BAK15960.1| 2-methylthioadenine synthetase [Solibacillus silvestris StLB046]
          Length = 511

 Score =  303 bits (775), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 172/450 (38%), Positives = 264/450 (58%), Gaps = 19/450 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++F++++YGCQMN +D+  M  +F   GY     +++AD+++LNTC IRE A  KV+  L
Sbjct: 64  RKFYIRTYGCQMNEHDTEVMAGIFMQLGYTPTEMIEEADVVLLNTCAIRENAENKVFGEL 123

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G +   K    ++  ++L+ V GC++Q E    +IL++   V++V G    +RLP +L  
Sbjct: 124 GFLLKYK----RKNPEMLIGVCGCMSQEESVVNKILKQYQHVDMVFGTHNIHRLPNILHD 179

Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKR--GVTAFLTIQEGCDKFCTFCVVPYTR 199
           A   K +V   +S E D  E L        +KR   + A++ I  GCDKFCT+C+VPYTR
Sbjct: 180 AYMSKEMVVEVWSKEGDVIENLP-------KKRIGSIKAWVNIMYGCDKFCTYCIVPYTR 232

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G E SR   +++ E R+L   G  EI LLGQNVNA+ GK  D  +    DL+  L +I  
Sbjct: 233 GKERSRRPEEIIQEVRELAAQGYKEIMLLGQNVNAY-GKDFDDIEYRLGDLMDELRKI-D 290

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           + R+R+TTSHPRD  D LIK       L+ ++HLPVQSGS+ ILK M R++T   + Q++
Sbjct: 291 IPRIRFTTSHPRDFDDHLIKVLAKGGNLVDHIHLPVQSGSNEILKIMARKYTREHFLQLV 350

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
           D+I++  P + +++D IVG+P ET++ F+ T+DL  ++G+  AF++ YSPR GTP + M+
Sbjct: 351 DKIKAAIPGVTLTTDIIVGYPNETEEQFQETLDLYRQVGFDMAFTYIYSPREGTPAAKMV 410

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSV 438
           + V E  K +RL  L   + E          GQ +EVL+E   K +   L G +   + V
Sbjct: 411 DNVTEEEKKDRLHRLNAVVSEYSAKALKGLEGQTVEVLVEGSSKRRDDVLAGYTRKNRLV 470

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468
              +    IG ++ V+I + K  +L GE V
Sbjct: 471 NFKADPKFIGKLVNVKILEAKSYSLMGEFV 500


>gi|297191648|ref|ZP_06909046.1| methylase [Streptomyces pristinaespiralis ATCC 25486]
 gi|297151014|gb|EDY65490.2| methylase [Streptomyces pristinaespiralis ATCC 25486]
          Length = 503

 Score =  303 bits (775), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 179/456 (39%), Positives = 265/456 (58%), Gaps = 28/456 (6%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERV--NSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + V++YGCQMNV+DS R+  +    GY R    +  DAD++V NTC +RE A  K+Y  L
Sbjct: 15  YEVRTYGCQMNVHDSERLSGLLEDAGYVRAPEGADGDADVVVFNTCAVRENADNKLYGNL 74

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR+  +K+ R      + + V GC+AQ + + I+ ++P V+VV G     +LP LLERAR
Sbjct: 75  GRLAPMKSRRP----GMQIAVGGCLAQKDRDTIVTKAPWVDVVFGTHNIGKLPVLLERAR 130

Query: 145 FGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             +   V+   S+E     L        R+    A+++I  GC+  CTFC+VP  RG E 
Sbjct: 131 VQEEAQVEIAESLEAFPSTLPT-----RRESAYAAWVSISVGCNNTCTFCIVPALRGKEK 185

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVR 262
            R    ++ E   L+  GV EITLLGQNVNA+   G D G++  FS LL +   I+GL R
Sbjct: 186 DRRPGDILAEIEALVAEGVSEITLLGQNVNAY---GSDIGDREAFSKLLRACGNIEGLER 242

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+T+ HPRD +D +I A  +   +MP LH+P+QSGSD ILK+M R +    +  II+++
Sbjct: 243 VRFTSPHPRDFTDDVIAAMAETPNVMPQLHMPLQSGSDTILKAMRRSYRQERFLGIIEKV 302

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+  P  AIS+D IVGFPGET++DF  TM  V +  +A AF+F+YS R GTP + M  Q+
Sbjct: 303 RAAIPHAAISTDIIVGFPGETEEDFEQTMHTVREARFANAFTFQYSKRPGTPAATMDGQI 362

Query: 383 DENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKG---KLVGRSPWL 435
            + V  E   RL+ LQ+++  ++   N   VG+ +EV++ E  G++ G   +L GR+P  
Sbjct: 363 PKEVVQERYMRLVALQEEISWEE---NKKQVGRTLEVMVAEGEGRKDGATHRLSGRAPDN 419

Query: 436 QSVVLNSKNHNI--GDIIKVRITDVKISTLYGELVV 469
           + V     +  +  GD++ V IT      L  E  V
Sbjct: 420 RLVHFTKPDAEVRPGDVVTVEITYAAPHHLLAEGAV 455


>gi|118618695|ref|YP_907027.1| hypothetical protein MUL_3378 [Mycobacterium ulcerans Agy99]
 gi|229890570|sp|A0PT87|MIAB_MYCUA RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|118570805|gb|ABL05556.1| conserved hypothetical protein [Mycobacterium ulcerans Agy99]
          Length = 532

 Score =  303 bits (775), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 171/453 (37%), Positives = 264/453 (58%), Gaps = 24/453 (5%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           + V++YGCQMNV+DS RM  +  + GY R     DAD++V NTC +RE A  K+Y  L  
Sbjct: 26  YQVRTYGCQMNVHDSERMAGLLEAAGYRRAAEGTDADVVVFNTCAVRENADNKLYGNLSH 85

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           +      R +   D+ + V GC+AQ + + +LR++P V+VV G      LP LL+RAR  
Sbjct: 86  L----APRKRTSPDMQIAVGGCLAQKDRDALLRKAPWVDVVFGTHNIGSLPALLDRARH- 140

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
            RV   + +   +    S+      R+    A+++I  GC+  CTFC+VP  RG EI RS
Sbjct: 141 NRVAQVEIAEALQQFPSSLPSA---RESAYAAWVSISVGCNNTCTFCIVPSLRGKEIDRS 197

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAW----RGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            + ++ E + L+D GV EITLLGQNVNA+        L   +  F++LL +  +I GL R
Sbjct: 198 PADILAEVQSLVDTGVVEITLLGQNVNAYGVSFADPALPRNRGAFAELLRACGDIDGLER 257

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+T+ HP + +D +I+A      + P LH+P+QSGSDR+L++M R + A  Y  II+R+
Sbjct: 258 VRFTSPHPAEFTDDVIEAMAQTPNVCPALHMPLQSGSDRVLRAMRRSYRAERYLGIIERV 317

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+  P  AI++D IVGFPGET+ DF AT+D+V +  ++ AF+F+YS R GTP + +  Q+
Sbjct: 318 RAAMPHAAITTDLIVGFPGETEQDFAATLDVVRQARFSAAFTFQYSKRPGTPAAELDGQL 377

Query: 383 DENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK----GKLVGRSPWL 435
            + V   + ERL+ LQ+++    +  N A VGQ +E+L+      K     ++ GR+   
Sbjct: 378 PKAVVQERYERLVELQEQI---SLEGNRAIVGQRVELLVATGEGRKDTLTARMSGRARDG 434

Query: 436 QSVVLNSKNHNI--GDIIKVRITDVKISTLYGE 466
           + V   + +  +  GDI+ V +TD     L  +
Sbjct: 435 RLVHFRAGDGPVRPGDIVTVEVTDAAPHHLIAD 467


>gi|313896795|ref|ZP_07830343.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Selenomonas sp. oral
           taxon 137 str. F0430]
 gi|320529997|ref|ZP_08031073.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Selenomonas artemidis
           F0399]
 gi|312974712|gb|EFR40179.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Selenomonas sp. oral
           taxon 137 str. F0430]
 gi|320137794|gb|EFW29700.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Selenomonas artemidis
           F0399]
          Length = 436

 Score =  303 bits (775), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 175/444 (39%), Positives = 260/444 (58%), Gaps = 15/444 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R+ +  YGCQMN+ D+ RME    S GY R     DAD+I++NTC +RE A +KVY  +G
Sbjct: 5   RYKILVYGCQMNIADAERMEGQLQSVGYTRTEETADADVILINTCCVRESAEDKVYGKIG 64

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            I+ LK    +    L+  +AGC+AQ EG+ +++R+P ++ V+G      L  ++   R 
Sbjct: 65  EIKKLK----ERNPHLIFGIAGCMAQKEGDNLMQRAPHIDFVLGTGKVQELTRIIAEIRA 120

Query: 146 GKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
               VVDT        E L I  GG       +A++ I  GC+ FCTFC+VPY RG E S
Sbjct: 121 EHSPVVDTVIG-NTIAENLPIARGG-----KFSAWVPIMYGCNNFCTFCIVPYVRGRERS 174

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R+   VV E R+ +  G  E+TLLGQNVN++   G D +   F+DLL  + E++G+ R+R
Sbjct: 175 RTPEDVVAEVRRAVAEGYTEVTLLGQNVNSY---GKDHKAADFADLLRMVDEVEGIRRVR 231

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           + TSHP+D+SD LI    +   L  ++HLPVQ GS+RILK+MNR +T   YR+ + R+R 
Sbjct: 232 FMTSHPKDISDKLIDTIRNGRHLCEHIHLPVQYGSNRILKAMNRVYTVESYRERVRRVRE 291

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             P+ ++++D IVGFPGET++DF AT+D + +I Y  A++F YS R GTP + M +QV +
Sbjct: 292 ALPEASLTTDLIVGFPGETEEDFAATLDFLREIRYDSAYTFLYSKRSGTPAARMEDQVPD 351

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVLNSK 443
           +VK  RL  L ++  +     N+   G  +EV++E   K +     GR+   + V+    
Sbjct: 352 DVKHARLNLLMEEQNKISRDINEKLAGTELEVMVEGESKNDPAVWSGRTRTNKIVLFPHG 411

Query: 444 NHNIGDIIKVRITDVKISTLYGEL 467
               GD + VRI   +   L GE+
Sbjct: 412 TEQAGDFVHVRIDRAQTWVLKGEI 435


>gi|288817802|ref|YP_003432149.1| 2-methylthioadenine synthetase [Hydrogenobacter thermophilus TK-6]
 gi|288787201|dbj|BAI68948.1| 2-methylthioadenine synthetase [Hydrogenobacter thermophilus TK-6]
 gi|308751400|gb|ADO44883.1| RNA modification enzyme, MiaB family [Hydrogenobacter thermophilus
           TK-6]
          Length = 433

 Score =  303 bits (775), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 172/432 (39%), Positives = 268/432 (62%), Gaps = 15/432 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           ++++K++GCQMN  DS R++ M  + GY+      +AD+I++NTC IREK  +KV+S LG
Sbjct: 2   KYYIKTFGCQMNFNDSERIKGMLQTLGYQEAKDWQEADIILINTCTIREKPDQKVFSHLG 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
             + LK    K     L+ V GC+AQ  G E++++SP+V+++      ++LPEL+++A+ 
Sbjct: 62  EYKKLKEQNPKA----LIGVCGCLAQRMGFELIQKSPVVDIMFSSFNMHQLPELIQQAQA 117

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G + V    +  D  ++L   D    R     A++T+ +GCDK CT+CVVP TRG + SR
Sbjct: 118 GYKAVAILENPPDDEDKLW--DYPTVRDNPYCAYVTVMKGCDKNCTYCVVPKTRGRQRSR 175

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           SL  ++ E R L+ +GV E+ LLGQNV AW GK +      FS+LLY ++EI G+ R+R+
Sbjct: 176 SLESILKEVRDLVSDGVKEVHLLGQNVTAW-GKDIGKH---FSELLYRVAEIDGVERIRF 231

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
           TT HP+D+ + + KA G++  +  ++HLP Q+GSDRILK M+R +T  EY + I  ++  
Sbjct: 232 TTGHPKDLDEGIAKAMGEIKKVCEHIHLPFQAGSDRILKLMDRGYTKEEYLEKISMLKEY 291

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
              I  S+D IVGFP ET++DF  T+D++ K+ + Q FSFK+SPR  TP  +M  QV + 
Sbjct: 292 VKGITFSTDVIVGFPTETEEDFEETLDMLKKVRFEQVFSFKFSPRPDTPAYSMEGQVPDQ 351

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE--KHGKEKGKLVGRSPWLQSVVLNSK 443
           VK +R+  L +  +E       +  G I EVLIE  +HG    KL+GR+   + V +   
Sbjct: 352 VKTQRMSRLLQLQKEIMGEVAKSYEGTIQEVLIESIEHG---NKLIGRTRTNRWVSMEGG 408

Query: 444 NHNIGDIIKVRI 455
              +G ++KV++
Sbjct: 409 VEMLGKVVKVKV 420


>gi|282600854|ref|ZP_05979919.2| tRNA-I(6)A37 thiotransferase enzyme MiaB [Subdoligranulum variabile
           DSM 15176]
 gi|282571154|gb|EFB76689.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Subdoligranulum variabile
           DSM 15176]
          Length = 447

 Score =  303 bits (775), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 180/452 (39%), Positives = 259/452 (57%), Gaps = 20/452 (4%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
            P   FV+SYGCQ NV D  ++  +    G+   ++++DADLI+ NTC +RE A ++V+ 
Sbjct: 8   TPPLAFVRSYGCQQNVNDGEKIRGVLQDVGFGICDTLEDADLILFNTCAVREHAEQRVFG 67

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELL 140
            +G ++ LK    +    L++ V GC+AQ     E++ +  P V++V G     RLP +L
Sbjct: 68  NIGALKKLKEQNPR----LIIGVCGCMAQQPHIVEKLRQSYPYVDLVFGVDGIDRLPAML 123

Query: 141 -ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
            ER R GKR ++T        E + I      R  G  A+L I  GCD FCT+C+VPY R
Sbjct: 124 AERLRRGKRYLETPEQRNAVVEEMPI-----RRDSGFRAWLPIMYGCDNFCTYCIVPYVR 178

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G E SR    ++ E R LI  G  EITLLGQNVN++ GKGL G    F+DLL  L  + G
Sbjct: 179 GRERSREPDAILAEFRDLITKGYKEITLLGQNVNSY-GKGL-GNPIDFADLLNLLCAVPG 236

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
             ++R+ TSHP+D S  LI        +  ++HLPVQSGS+R+L+ MNR +T  +Y  ++
Sbjct: 237 DYQIRFMTSHPKDASRKLIDTIAAQPHMCKHIHLPVQSGSNRLLQQMNRHYTVEQYLDLV 296

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
           D  R+  P +  SSD IVGFPGET++DF AT++LV K+GY Q F+F YS R GTP + M 
Sbjct: 297 DYARNKIPGVTFSSDIIVGFPGETEEDFEATLELVRKVGYMQLFTFIYSKRNGTPAAKM- 355

Query: 380 EQVDENVKAERLLCLQKKLREQ-QVSFN--DACVGQIIEVLIEKHGKEKGKLVGRSPWLQ 436
              D    AE+   +++ LR Q +++F    +  GQ + VL+E  G+  G + GR     
Sbjct: 356 --PDPTTHAEKAARMERLLRTQDEIAFAAIASMAGQNVRVLVEAAGRTPGTVNGRLDNNL 413

Query: 437 SVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            V   +    IG   +V +T  + + L GELV
Sbjct: 414 VVEFPAPEMLIGQWARVNLTGSRAALLTGELV 445


>gi|154494340|ref|ZP_02033660.1| hypothetical protein PARMER_03695 [Parabacteroides merdae ATCC
           43184]
 gi|154085784|gb|EDN84829.1| hypothetical protein PARMER_03695 [Parabacteroides merdae ATCC
           43184]
          Length = 456

 Score =  303 bits (775), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 171/450 (38%), Positives = 270/450 (60%), Gaps = 19/450 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F+++YGCQMNV DS  +  +    GY   + ++DAD I +NTC +R+ A +K+Y  L
Sbjct: 19  KKLFIETYGCQMNVADSEVVASIMKMDGYAVTDKIEDADAIFVNTCSVRDNAEQKIYGRL 78

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
              ++LK  +      L++ V GC+A+   EE++      ++VVGP +Y  LP L+    
Sbjct: 79  QYFQSLKRKK----KSLVIGVLGCMAERVKEELIEVHH-ADLVVGPDSYMDLPNLVGAVE 133

Query: 145 FGKRVVDTDYSVEDKFER-LSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            G++ ++ + S ++ ++  + +  GG +    ++ F++I  GC+ FCT+C+VPYTRG E 
Sbjct: 134 HGEKAINVELSTQETYKDVIPLKLGGVH----ISGFVSIMRGCNNFCTYCIVPYTRGRER 189

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR +  +++E R + D G  E+TLLGQNVN++  +  +GEK +F  LL  ++E    +R+
Sbjct: 190 SRDIESILNEIRDMRDKGFKEVTLLGQNVNSYLFEK-EGEKISFPALLKRVAEEVPEMRV 248

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+TTSHP+DMSD  +    + D +   +HLP QSGS RILK MNR++T   Y   I  IR
Sbjct: 249 RFTTSHPKDMSDETLHVIAEHDNICKMIHLPAQSGSSRILKVMNRKYTREWYLDRIAAIR 308

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML-EQV 382
            + PD AIS+D   GF  ET++D++ T+ L+ ++GY  AF FKYS R GT  +  L + V
Sbjct: 309 RILPDCAISTDLFCGFHSETEEDYQETLSLMREVGYDSAFLFKYSERPGTYAAQHLPDTV 368

Query: 383 DENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSV 438
            E  K  RL   + LQ +L E+    N   +G++ EVLIE   K  + +L GR+   + V
Sbjct: 369 SEEEKVRRLQGMIDLQNQLSEES---NKRDIGKVFEVLIEGFSKRSREQLFGRTSQNKVV 425

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           + + KN+ +G  IKVRI     +TL+G+ V
Sbjct: 426 IFDKKNYRVGQFIKVRINRASSATLFGDPV 455


>gi|326443848|ref|ZP_08218582.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Streptomyces
           clavuligerus ATCC 27064]
          Length = 497

 Score =  303 bits (775), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 178/457 (38%), Positives = 264/457 (57%), Gaps = 28/457 (6%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERV--NSMDDADLIVLNTCHIREKAAEKV 80
           V + + +++YGCQMNV+DS R+  +    GY R    S  DAD++V NTC +RE A  K+
Sbjct: 3   VQRSYEIRTYGCQMNVHDSERLSGLLEEAGYVRAAEGSDGDADVVVFNTCAVRENADNKL 62

Query: 81  YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140
           Y  LGR+  +K  R      + + V GC+AQ + + I+ R+P V+VV G     +LP LL
Sbjct: 63  YGNLGRLAPMKTRRP----GMQIAVGGCLAQKDRDTIVSRAPWVDVVFGTHNIGKLPVLL 118

Query: 141 ERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           ERAR  +   V+   S+E     L        R+    A+++I  GC+  CTFC+VP  R
Sbjct: 119 ERARVQEEAQVEIAESLEAFPSTLPT-----RRESAYAAWVSISVGCNNTCTFCIVPALR 173

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIK 258
           G E  R    ++ E   L+  GV EITLLGQNVNA+   G D G++  FS LL +   I+
Sbjct: 174 GKEKDRRPGDILAEIEALVAEGVSEITLLGQNVNAY---GSDIGDREAFSKLLRACGRIE 230

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           GL R+R+T+ HPRD +D +I A  +   +MP LH+P+QSGSD +L++M R +    +  I
Sbjct: 231 GLERVRFTSPHPRDFTDDVIAAMAETPNVMPQLHMPLQSGSDAVLRAMRRSYRQERFLGI 290

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           ID++R   P  AIS+D IVGFPGET++DF  T+  V +  +A AF+F+YS R GTP + M
Sbjct: 291 IDKVREAIPHAAISTDIIVGFPGETEEDFEQTLHTVREARFANAFTFQYSKRPGTPAATM 350

Query: 379 LEQVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKG---KLVGR 431
             Q+ + V   + ERL+ LQ+++   +   N   VG+++EV++ E  G++ G   +L GR
Sbjct: 351 EGQLPKEVVQARYERLVVLQEEISWAE---NKKQVGRVLEVMVAEGEGRKDGATQRLSGR 407

Query: 432 SPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGE 466
           +P  + V        +  GD++ V IT      L  E
Sbjct: 408 APDNRLVHFTKPEEEVRPGDVVTVEITYAAPHHLLAE 444


>gi|296393361|ref|YP_003658245.1| RNA modification enzyme, MiaB family [Segniliparus rotundus DSM
           44985]
 gi|296180508|gb|ADG97414.1| RNA modification enzyme, MiaB family [Segniliparus rotundus DSM
           44985]
          Length = 514

 Score =  303 bits (775), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 169/476 (35%), Positives = 277/476 (58%), Gaps = 44/476 (9%)

Query: 21  CIVPQ------RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIRE 74
           C VP+       + ++++GCQMNV+DS R+  +  + G+ +      AD++V NTC +RE
Sbjct: 17  CSVPEDHPANRTYELRTFGCQMNVHDSERLAGLLEADGHVKAEDGASADVVVFNTCAVRE 76

Query: 75  KAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYY 134
            A +++Y  LG +R +K +       + + V GC+AQ +G+ +LRR+P V+VV G     
Sbjct: 77  NADDRLYGTLGHLRPIKEA----NPGMQIAVGGCLAQKDGDTVLRRAPWVDVVFGTHNMG 132

Query: 135 RLPELLERARFGK----RVVDTDYSVEDKF--ERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
            LP LL RAR  +     +VD+  +       +R S+  G          +++I  GC+ 
Sbjct: 133 SLPALLRRARHNQAAQIEIVDSLQAFPSTLPSKRDSLHAG----------WVSIAVGCNN 182

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG----KGLDGEK 244
            CTFC+VP  RG ++ R+  ++V E R L+  GV E+TLLGQNVNA+        L  ++
Sbjct: 183 TCTFCIVPSLRGKQLDRAPQEIVAEVRALVAEGVLEVTLLGQNVNAYGSSFADPALPRDR 242

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304
             F+ LL S+ EI+GL R+R+T+ HP + ++ ++ A  +   + P+LH+P+QSGSDR+LK
Sbjct: 243 GAFAKLLRSMGEIEGLERVRFTSPHPAEFTEDVVLAMAETPNVCPHLHMPLQSGSDRVLK 302

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
           +M R + + +Y  I+ R+R + PD AI++D IVGFPGET++DF+AT+D+V +  +A A++
Sbjct: 303 AMRRSYRSAKYLGIVRRVRELLPDAAITTDIIVGFPGETEEDFQATLDVVAQARFASAYT 362

Query: 365 FKYSPRLGTPGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIE-- 419
           F+YS R GTP + + +Q+D+ V AE   RL+ LQ+++  ++   N+  +G+  E+L+   
Sbjct: 363 FQYSKRPGTPAAELPDQIDKEVVAERYQRLVELQERICLEE---NEQQLGREAELLVSAP 419

Query: 420 ---KHGKEKGKLVGRS---PWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
              K   +  +L GRS     +  +         GD ++VRI       L GE V 
Sbjct: 420 HEGKKNAQTSRLSGRSRDGRLVHFLPPEGAQLRPGDFVRVRIAHAAPHHLIGEAVA 475


>gi|331011329|gb|EGH91385.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Pseudomonas
           syringae pv. tabaci ATCC 11528]
          Length = 351

 Score =  303 bits (775), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 157/352 (44%), Positives = 222/352 (63%), Gaps = 8/352 (2%)

Query: 120 RSPIVNVVVGPQTYYRLPELLERARFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTA 178
           R+P V+VV GPQT +RLPE+++ AR  +   VD  +   +KF+ L        R  G +A
Sbjct: 4   RAPYVDVVFGPQTLHRLPEMIDAARITRLPQVDVSFPEIEKFDHLP-----EPRVDGPSA 58

Query: 179 FLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK 238
           ++++ EGC K+CTFCVVPYTRG E+SR    V+ E   L +NGV E+TLLGQNVN +RG 
Sbjct: 59  YVSVMEGCSKYCTFCVVPYTRGEEVSRPFDDVLSEVIHLAENGVREVTLLGQNVNGYRGT 118

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
             DG     +DL+  ++ + G+ R+RYTTSHP + SD LI+AH ++  L+ +LHLPVQSG
Sbjct: 119 THDGRVADLADLIRVVAAVDGIDRIRYTTSHPLEFSDSLIQAHAEVPELVKHLHLPVQSG 178

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           SDRIL +M R HT  EY+  + ++R+  P I+ISSDFIVGFPGET+ DF  TM L++ +G
Sbjct: 179 SDRILAAMKRNHTTLEYKSRLRKLRAAVPGISISSDFIVGFPGETEKDFDNTMKLIEDVG 238

Query: 359 YAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI 418
           +  +FSF YSPR GTP +++ +   E +K ERL  LQ +L +Q    +   VG I  +L+
Sbjct: 239 FDFSFSFVYSPRPGTPAADLKDDTPEALKKERLAALQHRLNQQGFEISRQMVGSIQRILV 298

Query: 419 EKHG-KEKGKLVGRSPWLQSVVLNSKNHN-IGDIIKVRITDVKISTLYGELV 468
             +  K+ G+L GR+   + V     N   IG    V I D +  +L G L+
Sbjct: 299 TDYSKKDPGELQGRTENNRIVNFRCNNPKLIGQFANVHIDDAQPHSLRGSLL 350


>gi|302542068|ref|ZP_07294410.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302459686|gb|EFL22779.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Streptomyces
           himastatinicus ATCC 53653]
          Length = 496

 Score =  302 bits (774), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 177/454 (38%), Positives = 266/454 (58%), Gaps = 29/454 (6%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERV---NSMDDADLIVLNTCHIREKAAEKVYSF 83
           + V++YGCQMNV+DS R+  +    GY R        +AD++V NTC +RE A  ++Y  
Sbjct: 6   YEVRTYGCQMNVHDSERLSGLLEGAGYVRAPEGTGEGEADIVVFNTCAVRENADNRLYGN 65

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR+  +K  R      + + V GC+AQ + + I++++P V+VV G      LP LLERA
Sbjct: 66  LGRLAPVKARRP----GMQIAVGGCLAQKDRDTIVKKAPWVDVVFGTHNIGSLPVLLERA 121

Query: 144 RFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           R  +   V+   S+E     L        R+    A+++I  GC+  CTFC+VP  RG E
Sbjct: 122 RVQEEAQVEIAESLEAFPSTLPT-----RRESAYAAWVSISVGCNNTCTFCIVPALRGKE 176

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLV 261
             R    ++ E   L+  GV EITLLGQNVNA+   G D G++  FS LL +   ++GL 
Sbjct: 177 KDRRPGDILAEVEALVAEGVTEITLLGQNVNAY---GSDIGDREAFSKLLRACGNVEGLE 233

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+T+ HPRD +D +I A  + + +MP LH+P+QSGSD +LK+M R +    Y  II++
Sbjct: 234 RVRFTSPHPRDFTDDVIAAMAETENVMPQLHMPLQSGSDTVLKAMRRSYRQERYLGIIEK 293

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R+  PD AIS+D IVGFPGETD+DF  T+ +V +  +AQAF+F+YS R GTP + M  Q
Sbjct: 294 VRAAMPDAAISTDIIVGFPGETDEDFEQTLHVVREARFAQAFTFQYSKRPGTPAAEMDGQ 353

Query: 382 VDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKG---KLVGRSPW 434
           + + V   + ERL+ LQ+++  ++   N   VG+ +EVL+ E  G++     +L GR+P 
Sbjct: 354 LPKAVVQERYERLVALQEEISWEE---NKKQVGRTLEVLVAEGEGRKDDATRRLSGRAPD 410

Query: 435 LQSVVLNSKNHNI--GDIIKVRITDVKISTLYGE 466
            + V     +  +  GD++ V IT      L  E
Sbjct: 411 NRLVHFTRPDEPVRPGDVVTVDITYAAPHHLLAE 444


>gi|317474690|ref|ZP_07933964.1| MiaB family RNA modification enzyme [Bacteroides eggerthii
           1_2_48FAA]
 gi|316909371|gb|EFV31051.1| MiaB family RNA modification enzyme [Bacteroides eggerthii
           1_2_48FAA]
          Length = 456

 Score =  302 bits (774), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 170/451 (37%), Positives = 271/451 (60%), Gaps = 20/451 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F+++YGCQMNV DS  +  +    GY   +++++AD + +NTC IR+ A +K+ + L
Sbjct: 19  KKLFIETYGCQMNVADSEVIASVMQMAGYFVADTLEEADAVFMNTCSIRDNAEQKILNRL 78

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
               +LK    K+  +L+V V GC+A+   ++++     V++VVGP  Y  LP+L+    
Sbjct: 79  EFFHSLK----KKKKNLIVGVLGCMAERVKDDLITNHH-VDLVVGPDAYLTLPDLIAAVE 133

Query: 145 FGKRVVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            G++ ++ + S  + +  +  S + G +     ++ F++I  GC+ FCT+C+VPYTRG E
Sbjct: 134 AGEKAINVELSTTETYRDVIPSRICGNH-----ISGFVSIMRGCNNFCTYCIVPYTRGRE 188

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR +  +++E   L+  G  E+TLLGQNVN++R +  DGE  TF  LL  ++     VR
Sbjct: 189 RSRDVESILNEVSDLVAKGYKEVTLLGQNVNSYRFEKADGEVITFPMLLRIVAGAAPGVR 248

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP+DMSD  ++   ++  +  ++HLPVQSGS RILK MNR++T   Y + +D I
Sbjct: 249 IRFTTSHPKDMSDETLQVIAEVPNVCKHIHLPVQSGSSRILKLMNRKYTREWYLERVDAI 308

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML-EQ 381
           R + PD  +S+D   GF  ET++D + ++ L+++ GY  AF FKYS R GT  S  L + 
Sbjct: 309 RRIVPDCGLSTDIFSGFHSETEEDHQLSLSLMEECGYDAAFMFKYSERPGTYASKHLPDD 368

Query: 382 VDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQS 437
           V E VK  RL   + LQ +L  +    N  CVG+  EVL+E   K  + +L GR+   + 
Sbjct: 369 VPEEVKIRRLNEIIALQNRLSAEA---NARCVGKTYEVLVEGVSKRSRDQLFGRTEQNRV 425

Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           VV +   H +GD + V+IT+   +TL GE V
Sbjct: 426 VVFDRGTHRVGDFVTVKITESSSATLKGEEV 456


>gi|126658288|ref|ZP_01729438.1| tRNA-i(6)A37 modification enzyme MiaB [Cyanothece sp. CCY0110]
 gi|126620437|gb|EAZ91156.1| tRNA-i(6)A37 modification enzyme MiaB [Cyanothece sp. CCY0110]
          Length = 430

 Score =  302 bits (774), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 179/441 (40%), Positives = 266/441 (60%), Gaps = 23/441 (5%)

Query: 36  MNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRI 95
           MN  DS RM  +    G++     + AD+I+ NTC IR+ A +KVYS+LGR    +  R 
Sbjct: 1   MNKADSERMAGILEDMGFQWSEDPNGADVILYNTCTIRDNAEQKVYSYLGR----QAKRK 56

Query: 96  KEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYS 155
            E  DL +VVAGCVAQ EGE+ILRR P +++V+GPQ   RL +LL +   G +VV T   
Sbjct: 57  HENPDLTLVVAGCVAQQEGEQILRRVPELDLVMGPQHANRLQDLLTQVFDGNQVVAT--- 113

Query: 156 VEDKFERLSIVDGGYNRKRG--VTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
                E + IV+     +R   VTA++ I  GC++ C++CVVP  RG+E SR+   +  E
Sbjct: 114 -----EPIHIVEDITKPRRDSTVTAWVNIIYGCNERCSYCVVPNVRGVEQSRTPEAIYQE 168

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDG------EKCTFSDLLYSLSEIKGLVRLRYTT 267
              L   G  EITLLGQN++A+ G+ L G       + T +DLLY + +I G+ RLR+ T
Sbjct: 169 MELLGKQGYKEITLLGQNIDAY-GRDLPGVTETGRHQHTLTDLLYQVHDISGIERLRFAT 227

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
           SHPR  ++ LIKA  +L  +  + H+P QSG + +LK+M R +T  +YR+IID+IR   P
Sbjct: 228 SHPRYFTERLIKACHELPKVCEHFHIPFQSGDNDVLKAMKRGYTHEKYRKIIDKIRQYMP 287

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
           D +IS+D IVGFPGET++ F  T+ LVD IG+ Q  +  YSPR GTP +    Q+ E +K
Sbjct: 288 DASISADAIVGFPGETEEQFENTLKLVDDIGFDQLNTAAYSPRPGTPAAIWDNQLSEEIK 347

Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSPWLQSVVLNSKNHN 446
           ++RL  L   + ++    +   + +I EVL+E ++ K+  +++GR+   +          
Sbjct: 348 SDRLQRLNHLVAQKAAQRSQRYLNRIEEVLVEDQNPKDNSQVMGRTRGNRLTFFKGDIDQ 407

Query: 447 I-GDIIKVRITDVKISTLYGE 466
           + G +IKV+IT+V+  +L GE
Sbjct: 408 LKGQLIKVKITEVRAFSLTGE 428


>gi|320140890|gb|EFW32737.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           subsp. aureus MRSA131]
          Length = 514

 Score =  302 bits (774), Expect = 8e-80,   Method: Compositional matrix adjust.
 Identities = 170/446 (38%), Positives = 266/446 (59%), Gaps = 15/446 (3%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           F +K+YGCQMN +D+  +  +  + GY+    ++ AD+I++NTC IRE A  KV+S +G 
Sbjct: 70  FLIKTYGCQMNAHDTEVIAGILEALGYQATTDINTADVILINTCAIRENAENKVFSEIGN 129

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           +++LK    KE  D+L+ V GC++Q E    +IL+    V+++ G    + LPE+LE A 
Sbjct: 130 LKHLK----KERPDILIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHHLPEILEEAY 185

Query: 145 FGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             K +V   +S E D  E L  V     R+  + A++ I  GCDKFCT+C+VP+TRG E 
Sbjct: 186 LSKAMVVEVWSKEGDVIENLPKV-----REGNIKAWVNIMYGCDKFCTYCIVPFTRGKER 240

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR    ++DE R+L   G  EITLLGQNVN++ GK L   +    DLL ++S+I  + R+
Sbjct: 241 SRRPEDIIDEVRELAREGYKEITLLGQNVNSY-GKDLQDIEYDLGDLLQAISKI-AIPRV 298

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+TTSHP D +D +I    +   ++P++HLPVQSG++ +LK M R++T   Y  ++ RI+
Sbjct: 299 RFTTSHPWDFTDHMIDVISEGGNIVPHIHLPVQSGNNAVLKIMGRKYTRESYLDLVKRIK 358

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              P++A+++D IVG+P E+++ F  T+ L D++G+  A+++ YS R GTP + M + V 
Sbjct: 359 DRIPNVALTTDIIVGYPNESEEQFEETLTLYDEVGFEHAYTYLYSQRDGTPAAKMKDNVP 418

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVLNS 442
            NVK ERL  L KK+            GQ + VL E   K+  + L G +   + V   +
Sbjct: 419 LNVKKERLQRLNKKVGHYSQIAMSKYEGQTVTVLCEGSSKKDDQVLSGYTDKNKLVNFKA 478

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
               IG +++VRI + K  +L G  +
Sbjct: 479 PKEMIGKLVEVRIDEAKQYSLNGSFI 504


>gi|296171751|ref|ZP_06852910.1| tRNA-I(6)A37 thiotransferase [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295893980|gb|EFG73745.1| tRNA-I(6)A37 thiotransferase [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 495

 Score =  302 bits (774), Expect = 8e-80,   Method: Compositional matrix adjust.
 Identities = 169/453 (37%), Positives = 263/453 (58%), Gaps = 25/453 (5%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           + V++YGCQMNV+DS R+  +  + GY+R     DAD++V NTC +RE A  K+Y  L  
Sbjct: 7   YQVRTYGCQMNVHDSERLAGLLEAAGYQRAVDGSDADVVVFNTCAVRENADNKLYGNLSH 66

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           +      R +   ++ + V GC+AQ + + +LR++P V+VV G      LP LLERAR  
Sbjct: 67  L----APRKRGNPEMQIAVGGCLAQKDRDAVLRKAPWVDVVFGTHNIGSLPTLLERARHN 122

Query: 147 KRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           K   V+   S+++    L        R+    A++++  GC+  CTFC+VP  RG E+ R
Sbjct: 123 KAAQVEIAESLQEFPSSLPSA-----RESAYAAWVSVSVGCNNSCTFCIVPSLRGKEVDR 177

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAW----RGKGLDGEKCTFSDLLYSLSEIKGLV 261
           S + V+ E R L+ +GV E+TLLGQNVNA+        L  ++  F+ LL +   I GL 
Sbjct: 178 SPADVLAEVRALVADGVVEVTLLGQNVNAYGVSFADPALPRDRGAFARLLRACGNIDGLE 237

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+T+ HP + +D +I+A      + P LH+P+QSGSDR+L++M R + A  Y  IIDR
Sbjct: 238 RVRFTSPHPAEFTDDVIEAMAQTPNVCPALHMPLQSGSDRVLRAMRRSYRAERYLGIIDR 297

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R+  P+ AI++D IVGFPGET++DF AT+D+V +  +A AF+F+YS R GTP + +  Q
Sbjct: 298 VRAAMPNAAITTDLIVGFPGETEEDFAATLDVVRQARFAAAFTFQYSKRPGTPAAELDGQ 357

Query: 382 VDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK----GKLVGRSPW 434
           + + V  E   RL+ LQ+++    +  N A VGQ +E+L+      K     ++ GR+  
Sbjct: 358 LPKTVVQERYDRLIELQEQI---SLEGNRALVGQTVELLVAAGEGRKDTRTARMTGRARD 414

Query: 435 LQSVVLNSKNH-NIGDIIKVRITDVKISTLYGE 466
            + V   + +    GD +  +IT      L  +
Sbjct: 415 GRLVHFGADDRVRPGDFVTAKITQAAPHHLIAD 447


>gi|294631817|ref|ZP_06710377.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Streptomyces sp. e14]
 gi|292835150|gb|EFF93499.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Streptomyces sp. e14]
          Length = 500

 Score =  302 bits (773), Expect = 9e-80,   Method: Compositional matrix adjust.
 Identities = 175/457 (38%), Positives = 268/457 (58%), Gaps = 28/457 (6%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERV--NSMDDADLIVLNTCHIREKAAEKV 80
           V + + +++YGCQMNV+DS R+  +    GY R    S  DAD++V NTC +RE A  ++
Sbjct: 55  VTRSYEIRTYGCQMNVHDSERLAGLLEDAGYVRAPEGSDGDADVVVFNTCAVRENADNRL 114

Query: 81  YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140
           Y  LG +   K  R      + + V GC+AQ + + I++++P V+VV G     +LP LL
Sbjct: 115 YGNLGHLAPKKAKRP----GMQIAVGGCLAQKDRDTIVKKAPWVDVVFGTHNIGKLPVLL 170

Query: 141 ERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           ERAR  +   V+   S+E     L        R+    A+++I  GC+  CTFC+VP  R
Sbjct: 171 ERARVQEEAQVEIAESLEAFPSTLPT-----RRESAYAAWVSISVGCNNTCTFCIVPALR 225

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIK 258
           G E  R    ++ E   L+  GV EITLLGQNVNA+   G D G++  FS LL +   ++
Sbjct: 226 GKEKDRRPGDILAEVEALVGEGVSEITLLGQNVNAY---GSDIGDREAFSKLLRACGNVE 282

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           GL R+R+T+ HPRD +D +I A  +   +MP LH+P+QSGSD +LK+M R +    Y  I
Sbjct: 283 GLERVRFTSPHPRDFTDDVIAAMAETPNVMPQLHMPLQSGSDTVLKAMRRSYRQERYLGI 342

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           I+++R+  P  AI++D IVGFPGET++DF  T+ +V +  +AQAF+F+YS R GTP + M
Sbjct: 343 IEKVRAAIPHAAITTDIIVGFPGETEEDFEQTLHVVREARFAQAFTFQYSKRPGTPAAEM 402

Query: 379 LEQVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKG---KLVGR 431
            +QV + V   + ERL+ LQ+++  ++   N   VG+ +E+++ E  G++ G   +L GR
Sbjct: 403 DDQVPKEVVQARYERLVALQEEISWEE---NKKQVGRTLELMVAEGEGRKDGATHRLSGR 459

Query: 432 SPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGE 466
           +P  + V     +  +  GD++ V IT      L  E
Sbjct: 460 APDNRLVHFTKPDEEVRPGDVVTVEITYAAPHHLLAE 496


>gi|237739942|ref|ZP_04570423.1| tRNA 2-methylthioadenosine synthase [Fusobacterium sp. 2_1_31]
 gi|229421959|gb|EEO37006.1| tRNA 2-methylthioadenosine synthase [Fusobacterium sp. 2_1_31]
          Length = 435

 Score =  302 bits (773), Expect = 9e-80,   Method: Compositional matrix adjust.
 Identities = 164/441 (37%), Positives = 266/441 (60%), Gaps = 16/441 (3%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           +YGCQMNV +S +++ +F + GY+     DDAD + LNTC +RE AA +++  LG ++ L
Sbjct: 8   TYGCQMNVNESAKIKKIFQNLGYDVTEETDDADAVFLNTCTVREGAATQIFGKLGELKAL 67

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
           K     E    ++ V GC AQ +GEE++R+ PI+++V+G Q   R+P+ +E+    +   
Sbjct: 68  K-----EKKGTIIGVTGCFAQEQGEELVRKFPIIDIVMGNQNIGRIPQAIEKIENNESTH 122

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
           +     ED  E    +D  +   +  TA ++I  GC+ FCTFC+VPY RG E S  L ++
Sbjct: 123 EVYTDNED--ELPPRLDAEFASDQ--TASISITYGCNNFCTFCIVPYVRGRERSVPLEEI 178

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270
           V +  + ++ G  EI LLGQNVN++     +G+   F+ LL  + +++G   +R+ + HP
Sbjct: 179 VKDVEQYVNKGAKEIVLLGQNVNSYGKDFKNGD--NFAKLLEEICKVEGDYIVRFVSPHP 236

Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330
           RD +D +I      D +   LHLP+QSGS ++L+ M R +T  +Y  ++D+I+S  PD+A
Sbjct: 237 RDFTDDVIDVIAKNDKISKCLHLPLQSGSSQVLRKMGRGYTKEKYLALVDKIKSKIPDVA 296

Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER 390
           +++D IVGFPGET++DF  T+D+V+K+ +  ++ F YS R GT  + M  Q+DENVK ER
Sbjct: 297 LTADIIVGFPGETEEDFLDTIDVVEKVSFDNSYMFMYSIRKGTKAATMDNQIDENVKKER 356

Query: 391 LLCLQKKLREQQVSFNDAC--VGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNI- 447
           L  L +   + + SFN++     +I+ VL+E   K+  +++        +VL   + N+ 
Sbjct: 357 LQRLME--VQNKCSFNESSKYKDKIVRVLVEGPSKKNKEVLSGRTSTNKIVLFKGDMNLK 414

Query: 448 GDIIKVRITDVKISTLYGELV 468
           G  + V+I + K  TLYGELV
Sbjct: 415 GQFVNVKINECKTWTLYGELV 435


>gi|29829021|ref|NP_823655.1| methylase of isopentenylated A37 derivatives in tRNA [Streptomyces
           avermitilis MA-4680]
 gi|81720067|sp|Q82KC4|MIAB_STRAW RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|29606127|dbj|BAC70190.1| putative methylase of isopentenylated A37 derivatives in tRNA
           [Streptomyces avermitilis MA-4680]
          Length = 508

 Score =  302 bits (773), Expect = 9e-80,   Method: Compositional matrix adjust.
 Identities = 175/453 (38%), Positives = 263/453 (58%), Gaps = 28/453 (6%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERV--NSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + V++YGCQMNV+DS R+  +    GY R    S  DAD++V NTC +RE A  ++Y  L
Sbjct: 15  YEVRTYGCQMNVHDSERLSGLLEDAGYVRAPDGSDGDADVVVFNTCAVRENADNRLYGNL 74

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR+  +K  R      + + V GC+AQ + + I+ ++P V+VV G     +LP LLERAR
Sbjct: 75  GRLAPMKTKRP----GMQIAVGGCLAQKDRDTIVTKAPWVDVVFGTHNIGKLPVLLERAR 130

Query: 145 FGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             +   V+   S+E     L        R+    A+++I  GC+  CTFC+VP  RG E 
Sbjct: 131 VQEEAQVEIAESLEAFPSTLPT-----RRESAYAAWVSISVGCNNTCTFCIVPALRGKEK 185

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVR 262
            R    ++ E   L+  GV EITLLGQNVNA+   G D G++  FS LL +  +I GL R
Sbjct: 186 DRRTGDILAEIEALVGEGVSEITLLGQNVNAY---GSDIGDREAFSKLLRACGQIDGLER 242

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+T+ HPRD +D +I A  +   +MP LH+P+QSGSD +LK+M R +    Y  II+++
Sbjct: 243 VRFTSPHPRDFTDDVIAAMAETPNVMPQLHMPMQSGSDTVLKAMRRSYRQDRYLGIIEKV 302

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+  P  AI++D IVGFPGET++DF  TM  V +  + QAF+F+YS R GTP + M  Q+
Sbjct: 303 RAAIPHAAITTDIIVGFPGETEEDFEQTMHAVREARFTQAFTFQYSKRPGTPAATMENQI 362

Query: 383 DENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKG---KLVGRSPWL 435
            + V   + ERL+ LQ+++   +   N   VG+ +E+++ E  G++ G   +L GR+P  
Sbjct: 363 PKEVVQARYERLVALQEEISWDE---NKKQVGRTLELMVAEGEGRKDGATHRLSGRAPDN 419

Query: 436 QSVVLNSKNHNI--GDIIKVRITDVKISTLYGE 466
           + V     +  +  GD++ V +T      L  E
Sbjct: 420 RLVHFTKPDEEVRPGDVVTVEVTYAAPHHLLAE 452


>gi|319892314|ref|YP_004149189.1| tRNA-i(6)A37 methylthiotransferase [Staphylococcus pseudintermedius
           HKU10-03]
 gi|317162010|gb|ADV05553.1| tRNA-i(6)A37 methylthiotransferase [Staphylococcus pseudintermedius
           HKU10-03]
 gi|323464588|gb|ADX76741.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus
           pseudintermedius ED99]
          Length = 516

 Score =  302 bits (773), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 170/446 (38%), Positives = 264/446 (59%), Gaps = 15/446 (3%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           F +K+YGCQMN +D+  M  +  + GY     ++ AD+I+LNTC IRE A  KV+  +G 
Sbjct: 72  FLIKTYGCQMNAHDTEVMAGILTALGYTPTEDVNTADVILLNTCAIRENAENKVFGEIGN 131

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           ++++K  R     D L+ V GC++Q E    +IL+    V+++ G    +RLP++LE A 
Sbjct: 132 LKHIKQER----PDCLIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHRLPQILEEAY 187

Query: 145 FGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             K +V   +S E D  E L  V     R+  + A++ I  GCDKFCT+C+VP+TRG E 
Sbjct: 188 LSKAMVVEVWSKEGDVIENLPKV-----RQGRIKAWVNIMYGCDKFCTYCIVPFTRGKER 242

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR    +++E R L   G  EITLLGQNVNA+ GK ++  +    DLL  +S+I  + R+
Sbjct: 243 SRRPEDIIEEVRDLARQGYQEITLLGQNVNAY-GKDIEDLEYGLGDLLADISKID-IPRV 300

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+TTSHP D +D +I+   +   ++P++HLPVQSG+D++LK M R++T   Y  ++ RI+
Sbjct: 301 RFTTSHPWDFTDRMIEVIAEGGNIVPHIHLPVQSGNDQVLKIMGRKYTRESYLDLVARIK 360

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           +  PD+A+++D IVG+P ET+  F  T+ L + +G+  A+++ YS R GTP + M + V 
Sbjct: 361 AAMPDVALTTDIIVGYPNETEAQFEETLSLYEAVGFEHAYTYLYSQRDGTPAAKMKDNVP 420

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSPWLQSVVLNS 442
            +VK ERL  L + + E       A  G+ + VL E    K++  L G +   + V   +
Sbjct: 421 TDVKKERLQRLNRLVGEYSSRALKAYEGETVRVLCEGASKKDEAVLAGYTEKNKLVNFRA 480

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
               IG I+ V+I + K  +L GE V
Sbjct: 481 PKSVIGKIVDVKIVEAKQYSLNGEFV 506


>gi|118471123|ref|YP_887063.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Mycobacterium
           smegmatis str. MC2 155]
 gi|229890566|sp|A0QVX5|MIAB_MYCS2 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|118172410|gb|ABK73306.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Mycobacterium smegmatis
           str. MC2 155]
          Length = 512

 Score =  302 bits (773), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 169/444 (38%), Positives = 265/444 (59%), Gaps = 26/444 (5%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           + V++YGCQMNV+DS R+  +  S GY+R     DAD++V NTC +RE A  K+Y  L  
Sbjct: 25  YQVRTYGCQMNVHDSERLSGLLESAGYQRAAEGTDADIVVFNTCAVRENADNKLYGNLSH 84

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           +      R +   ++ + V GC+AQ + + +LRR+P V+VV G      LP LLERAR  
Sbjct: 85  L----APRKQADPNMQIAVGGCLAQKDRDAVLRRAPWVDVVFGTHNIGSLPTLLERARHN 140

Query: 147 KRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           +   V+   ++++    L       +R+    A+++I  GC+  CTFC+VP  RG E+ R
Sbjct: 141 REAQVEIVEALQEFPSALPA-----SRESAYAAWVSISVGCNNTCTFCIVPSLRGKEVDR 195

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE----KCTFSDLLYSLSEIKGLV 261
               ++ E + L+D GV EITLLGQNVNA+     D E    +  F+ LL +   I GL 
Sbjct: 196 RPGDILAEVQSLVDQGVLEITLLGQNVNAYGVSFADPELPRDRGAFAKLLRACGGIDGLE 255

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+T+ HP + +D +I+A      + P LH+P+QSGSDRILK+M R + A  +  IID+
Sbjct: 256 RVRFTSPHPAEFTDDVIEAMAATPNVCPTLHMPLQSGSDRILKAMRRSYRAERFLGIIDK 315

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R+  P  AI++D IVGFPGET++DF+AT+D+V++  +A AF+F+YS R GTP ++M +Q
Sbjct: 316 VRAAIPHAAITTDLIVGFPGETEEDFQATLDVVEQARFAGAFTFQYSKRPGTPAADMPDQ 375

Query: 382 VDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIE----KHGKEKGKLVGRSPW 434
           + ++V  E   RL+ LQ+++  +Q   N   VG+ +E+L+     +      ++ GR+  
Sbjct: 376 LPKSVVTERYQRLIELQERISLEQ---NREQVGRAVELLVATGEGRKDASTARMSGRARD 432

Query: 435 LQSVVLNSKNHNI--GDIIKVRIT 456
            + V     ++ I  GDI+   +T
Sbjct: 433 GRLVHFLPGDNEIRPGDIVTTTVT 456


>gi|255011954|ref|ZP_05284080.1| SAM/TRAM family methylase protein [Bacteroides fragilis 3_1_12]
 gi|313149788|ref|ZP_07811981.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313138555|gb|EFR55915.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 457

 Score =  302 bits (773), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 170/451 (37%), Positives = 265/451 (58%), Gaps = 20/451 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F+++YGCQMNV DS  +  +    GY    ++++AD + +NTC IR+ A +K+ + L
Sbjct: 18  KKLFIETYGCQMNVADSEVIASVMQMAGYSVAETLEEADAVFMNTCSIRDNAEQKILNRL 77

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
               ++K    K+   L+V V GC+A+   ++++     V++VVGP  Y  LPEL+    
Sbjct: 78  EFFHSMK----KKKKHLIVGVLGCMAERVKDDLIEHHH-VDLVVGPDAYLTLPELIASVE 132

Query: 145 FGKRVVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            G++ ++ + S  + +  +  S + G +     ++ F++I  GC+ FCT+C+VPYTRG E
Sbjct: 133 AGEKAMNVELSTTETYRDVIPSRICGNH-----ISGFVSIMRGCNNFCTYCIVPYTRGRE 187

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR +  +++E   L+  G  EITLLGQNVN++R +   GE  TF  LL  ++E    VR
Sbjct: 188 RSRDVESILNEVADLVSKGYKEITLLGQNVNSYRFEKEGGEVVTFPMLLRVVAEAAPDVR 247

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP+DMSD  ++    +  +  ++HLPVQSGS RILK MNR++T   Y   +  I
Sbjct: 248 VRFTTSHPKDMSDETLEVIAQVPNVCKHIHLPVQSGSSRILKLMNRKYTREWYLDRVSAI 307

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE-Q 381
           + + PD  +++D   GF  ET++D + ++ L++  GY  AF FKYS R GT  S  LE  
Sbjct: 308 KRIVPDCGLTTDIFSGFHSETEEDHQESLSLMEACGYDAAFMFKYSERPGTYASKHLEDN 367

Query: 382 VDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQS 437
           V E VK  RL   + LQ +L  +    N  C+G+  EVL+E   K  + +L GR+   + 
Sbjct: 368 VPEEVKVRRLNEIIALQNRLSAES---NTRCIGKTYEVLVEGVSKRSRDQLFGRTEQNRV 424

Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           VV +   H IGD + VRIT+   +TL GE V
Sbjct: 425 VVFDRGTHRIGDFVNVRITEASSATLKGEEV 455


>gi|329963728|ref|ZP_08301174.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacteroides fluxus YIT
           12057]
 gi|328527738|gb|EGF54730.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacteroides fluxus YIT
           12057]
          Length = 458

 Score =  301 bits (772), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 169/452 (37%), Positives = 269/452 (59%), Gaps = 20/452 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F+++YGCQMNV DS  +  +    GY    ++++AD + +NTC IR+ A +K+ + L
Sbjct: 18  KKLFIETYGCQMNVADSEVIASVMQMAGYSVAGTLEEADAVFMNTCSIRDNAEQKILNRL 77

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
               +LK  + +    L+V V GC+A+   ++++     V++VVGP  Y  LPEL+    
Sbjct: 78  EFFHSLKKKKRR----LIVGVLGCMAERVKDDLITNHH-VDLVVGPDAYLTLPELIAAVE 132

Query: 145 FGKRVVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            G++ ++ + S  + +  +  S + G +     ++ F++I  GC+ FCT+C+VPYTRG E
Sbjct: 133 AGEKAMNVELSTTETYRDVIPSRICGNH-----ISGFVSIMRGCNNFCTYCIVPYTRGRE 187

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR +  +++E   L   G  E+TLLGQNVN++R +  DG   TF  LL +++E    +R
Sbjct: 188 RSRDVESILNEVADLAQKGYKEVTLLGQNVNSYRFEKPDGAVVTFPMLLRTVAEAAPGMR 247

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP+DMSD  ++   D+  +  ++HLPVQSGS RILK MNRR+T   Y + +  I
Sbjct: 248 VRFTTSHPKDMSDETLQVIADMPNVCKHIHLPVQSGSSRILKLMNRRYTREWYLERVAAI 307

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML-EQ 381
           R + PD  +S+D   GF  ET++D + ++ L+++ GY  AF FKYS R GT  S  L + 
Sbjct: 308 RRIIPDCGLSTDIFSGFHSETEEDHQLSLSLMEECGYDAAFMFKYSERPGTYASKHLPDD 367

Query: 382 VDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQS 437
           V E VK  RL   + LQ +L  +    N  CVG+  EVL+E   K  + +L GR+   + 
Sbjct: 368 VPEEVKIRRLNEIIALQNRLSAEA---NARCVGRTYEVLVEGVSKRSRDQLFGRTEQNRV 424

Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
           VV +   H +GD + V++T+   +TL GE V+
Sbjct: 425 VVFDRGTHRVGDFVTVKVTESSSATLKGEEVL 456


>gi|258416055|ref|ZP_05682323.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           A9763]
 gi|257839203|gb|EEV63679.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           A9763]
          Length = 514

 Score =  301 bits (772), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 171/446 (38%), Positives = 265/446 (59%), Gaps = 15/446 (3%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           F +K+YGCQMN +D+  +  +  + GY+    ++ AD+I++NTC IRE A  KV+S +G 
Sbjct: 70  FLIKTYGCQMNAHDTEVIAGILEALGYQATTDINTADVILINTCAIRENAENKVFSEIGN 129

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           +++LK    KE  D+L+ V GC++Q E    +IL+    V+++ G    + LPE+LE A 
Sbjct: 130 LKHLK----KERPDILIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHHLPEILEEAY 185

Query: 145 FGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             K +V   +S E D  E L  V  G      + A++ I  GCDKFCT+C+VP+TRG E 
Sbjct: 186 LSKAMVVEVWSKEGDVIENLPKVCEG-----NIKAWVNIMYGCDKFCTYCIVPFTRGKER 240

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR    ++DE R+L   G  EITLLGQNVN++ GK L   +    DLL ++S+I  + R+
Sbjct: 241 SRRPEDIIDEVRELAREGYKEITLLGQNVNSY-GKDLQDIEYDLGDLLQAISKI-AIPRV 298

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+TTSHP D +D +I    +   ++P++HLPVQSG++ +LK M R++T   Y  ++ RI+
Sbjct: 299 RFTTSHPWDFTDHMIDVISEGGNIVPHIHLPVQSGNNAVLKIMGRKYTRESYLDLVKRIK 358

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              P++A+++D IVG+P E+++ F  T+ L D++G+  A+++ YS R GTP + M + V 
Sbjct: 359 DRIPNVALTTDIIVGYPNESEEQFEETLTLYDEVGFEHAYTYLYSQRDGTPAAKMKDNVP 418

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVLNS 442
            NVK ERL  L KK+            GQ + VL E   K+  + L G +   + V   +
Sbjct: 419 LNVKKERLQRLNKKVGHYSQIAMSKYEGQTVTVLCEGSSKKDDQVLAGYTDKNKLVNFKA 478

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
               IG +++VRI + K  +L G  V
Sbjct: 479 PKEMIGKLVEVRIDEAKQYSLNGSFV 504


>gi|308233434|ref|ZP_07664171.1| RNA modification enzyme, MiaB family protein [Atopobium vaginae DSM
           15829]
          Length = 455

 Score =  301 bits (772), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 175/455 (38%), Positives = 264/455 (58%), Gaps = 18/455 (3%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           +V + + +K++GCQMN++DS R+  +    G   V + ++AD+++  TC +REKA   +Y
Sbjct: 7   LVGKTYLIKTFGCQMNLHDSERVAGLLDDCGANEVATFEEADIVIFMTCSVREKADTHLY 66

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
              G + NL        G  ++ V GC+AQ +G ++    P V+VV G      +PELL 
Sbjct: 67  ---GAVSNLVTLPPSPCGKRVIAVGGCIAQRDGAKLREHVPNVDVVFGTSALASVPELLC 123

Query: 142 RARFGKRVVDTDYSVEDKFE--RLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
            A       + D    D  E  R    D    R +   A++ I  GC+ FCTFC+VPY R
Sbjct: 124 EAFES----NDDEVFVDTIEKNRGFSTDLPSKRDQSFHAWVPIMTGCNNFCTFCIVPYVR 179

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G E SR L +VVDE R+L D+GV E+TLLGQNVN++ G+ L  + C F++LL  + E+ G
Sbjct: 180 GRERSRVLERVVDEVRRLKDDGVREVTLLGQNVNSY-GRDLYKKPC-FAELLRKVGEV-G 236

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           + R+R+T+S+P+D+SD  I A  +   +MP LHL VQSGS RILK+M+R +T  +Y ++I
Sbjct: 237 IERIRFTSSNPKDLSDETIAAMAETPAVMPQLHLAVQSGSTRILKAMHRSYTREKYLEVI 296

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
           D ++S  PDIA+S+D IVGFPGET++DF  T+ LV ++ Y+ AF+F YS R GTP +N+ 
Sbjct: 297 DHLKSAMPDIALSTDIIVGFPGETEEDFEETLSLVREVEYSSAFTFIYSKRPGTPAANIE 356

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSV 438
           +     V  +R   L   + E     N   +  ++  L+E   K+    LVG SP  Q+V
Sbjct: 357 DTTPHEVIQQRFNRLTDLIEELAYKANQKELHTLVTSLVEGTSKKDSHVLVGHSPKNQTV 416

Query: 439 VLN-----SKNHNIGDIIKVRITDVKISTLYGELV 468
           + +     S    IG + +V + + K   L G+L 
Sbjct: 417 LFSLPKDASAQDYIGKMCEVYVEEAKTWYLRGKLT 451


>gi|328944037|ref|ZP_08241502.1| tRNA-I(6)A37 thiotransferase [Atopobium vaginae DSM 15829]
 gi|327492006|gb|EGF23780.1| tRNA-I(6)A37 thiotransferase [Atopobium vaginae DSM 15829]
          Length = 460

 Score =  301 bits (772), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 175/455 (38%), Positives = 264/455 (58%), Gaps = 18/455 (3%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           +V + + +K++GCQMN++DS R+  +    G   V + ++AD+++  TC +REKA   +Y
Sbjct: 12  LVGKTYLIKTFGCQMNLHDSERVAGLLDDCGANEVATFEEADIVIFMTCSVREKADTHLY 71

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
              G + NL        G  ++ V GC+AQ +G ++    P V+VV G      +PELL 
Sbjct: 72  ---GAVSNLVTLPPSPCGKRVIAVGGCIAQRDGAKLREHVPNVDVVFGTSALASVPELLC 128

Query: 142 RARFGKRVVDTDYSVEDKFE--RLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
            A       + D    D  E  R    D    R +   A++ I  GC+ FCTFC+VPY R
Sbjct: 129 EAFES----NDDEVFVDTIEKNRGFSTDLPSKRDQSFHAWVPIMTGCNNFCTFCIVPYVR 184

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G E SR L +VVDE R+L D+GV E+TLLGQNVN++ G+ L  + C F++LL  + E+ G
Sbjct: 185 GRERSRVLERVVDEVRRLKDDGVREVTLLGQNVNSY-GRDLYKKPC-FAELLRKVGEV-G 241

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           + R+R+T+S+P+D+SD  I A  +   +MP LHL VQSGS RILK+M+R +T  +Y ++I
Sbjct: 242 IERIRFTSSNPKDLSDETIAAMAETPAVMPQLHLAVQSGSTRILKAMHRSYTREKYLEVI 301

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
           D ++S  PDIA+S+D IVGFPGET++DF  T+ LV ++ Y+ AF+F YS R GTP +N+ 
Sbjct: 302 DHLKSAMPDIALSTDIIVGFPGETEEDFEETLSLVREVEYSSAFTFIYSKRPGTPAANIE 361

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSV 438
           +     V  +R   L   + E     N   +  ++  L+E   K+    LVG SP  Q+V
Sbjct: 362 DTTPHEVIQQRFNRLTDLIEELAYKANQKELHTLVTSLVEGTSKKDSHVLVGHSPKNQTV 421

Query: 439 VLN-----SKNHNIGDIIKVRITDVKISTLYGELV 468
           + +     S    IG + +V + + K   L G+L 
Sbjct: 422 LFSLPKDASAQDYIGKMCEVYVEEAKTWYLRGKLT 456


>gi|218281313|ref|ZP_03487801.1| hypothetical protein EUBIFOR_00366 [Eubacterium biforme DSM 3989]
 gi|218217498|gb|EEC91036.1| hypothetical protein EUBIFOR_00366 [Eubacterium biforme DSM 3989]
          Length = 477

 Score =  301 bits (772), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 176/446 (39%), Positives = 264/446 (59%), Gaps = 18/446 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + +F+ +YGCQ N  DS  +  +    G+    + + +D+I++NTC IR+ A EKV   L
Sbjct: 42  KTYFISTYGCQANERDSETLAGILDELGFTPNETAEGSDVIIINTCAIRQNAEEKV---L 98

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G I N K    +E  DL++ V GC+AQ EG  E +L + P V ++ G      LP +L  
Sbjct: 99  GEIGNFKR-LYRENKDLIIGVCGCMAQEEGLVETLLTKYPQVRLLFGTHNIQELPSMLYS 157

Query: 143 ARF-GKRVVDTDYSVEDK-FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
             F GK+VV   YS E + +E L +     +R     A++ I  GCDKFCT+C+VPYTRG
Sbjct: 158 CMFEGKKVVKI-YSKEGEVYENLPV-----HRFGTFKAWVNIMYGCDKFCTYCIVPYTRG 211

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            + SR +S+++ E ++L D G  EITLLGQNVNA+ GK +D E+  F+ LL  +++I G+
Sbjct: 212 KQRSRKMSEILKEVQELKDEGYKEITLLGQNVNAY-GKDMDNEQ-DFATLLEEVAKI-GI 268

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+TTSHP D S+ +I      D +MP++HLP+QSG D +LK M RR+T   Y  + D
Sbjct: 269 PRVRFTTSHPWDFSEQMIDVIAKYDNIMPFIHLPLQSGDDDVLKLMGRRYTKESYLALYD 328

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           +I +  P++A+S+D IVGFP ETD+ F  T+D+V    Y  AF+F +S R GTP S M +
Sbjct: 329 KIINTIPNVAVSTDIIVGFPNETDEQFEHTLDVVRYCKYDNAFTFIFSARPGTPASRMHD 388

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSPWLQSVV 439
            +D   K +RL  L K   +  +  N A +G+ + VL++    K++    G +   + V 
Sbjct: 389 SIDMETKRKRLARLNKTWNDLALEKNKAYIGRTVTVLVDGPSKKDENVYSGYTDTQKLVN 448

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYG 465
              +N   GD ++V+I D K  +L G
Sbjct: 449 FKGENLQAGDFVEVKILDAKTFSLDG 474


>gi|282916552|ref|ZP_06324310.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           subsp. aureus D139]
 gi|283770356|ref|ZP_06343248.1| 2-alkenal reductase [Staphylococcus aureus subsp. aureus H19]
 gi|282319039|gb|EFB49391.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           subsp. aureus D139]
 gi|283460503|gb|EFC07593.1| 2-alkenal reductase [Staphylococcus aureus subsp. aureus H19]
          Length = 514

 Score =  301 bits (772), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 170/446 (38%), Positives = 267/446 (59%), Gaps = 15/446 (3%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           F +K+YGCQMN +D+  +  +  + GY+  + ++ AD+I++NTC IRE A  KV+S +G 
Sbjct: 70  FLIKTYGCQMNAHDTEVIAGILEALGYQATSDINTADVILINTCAIRENAENKVFSEIGN 129

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           +++LK    KE  D+L+ V GC++Q E    +IL+    V+++ G    + LPE+LE A 
Sbjct: 130 LKHLK----KERPDILIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHHLPEILEEAY 185

Query: 145 FGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             K +V   +S E D  E L  V     R+  + A++ I  GCDKFCT+C+VP+TRG E 
Sbjct: 186 LSKAMVVEVWSKEGDVIENLPKV-----REGNIKAWVNIMYGCDKFCTYCIVPFTRGKER 240

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR    ++DE R+L   G  EITLLGQNVN++ GK L   +    DLL ++S+I  + R+
Sbjct: 241 SRRPEDIIDEVRELAREGYKEITLLGQNVNSY-GKDLQDIEYDLGDLLQAISKI-AIPRV 298

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+TTSHP D +D +I    +   ++P++HLPVQSG++ +LK M R++T   Y  ++ RI+
Sbjct: 299 RFTTSHPWDFTDHMIDVISEGGNIVPHIHLPVQSGNNAVLKIMGRKYTRESYLDLVKRIK 358

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              P++A+++D IVG+P E+++ F  T+ L D++G+  A+++ YS R GTP + M + V 
Sbjct: 359 DRIPNVALTTDIIVGYPNESEEQFEETLTLYDEVGFEHAYTYLYSQRDGTPAAKMKDNVP 418

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVLNS 442
            +VK ERL  L KK+            GQ + VL E   K+  + L G +   + V   +
Sbjct: 419 LDVKKERLQRLNKKVGHYSQIAMSKYEGQTVTVLCEGSSKKDDQVLAGYTDKNKLVNFKA 478

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
               IG +++VRI + K  +L G  V
Sbjct: 479 PKEMIGKLVEVRIDEAKQYSLNGSFV 504


>gi|329733662|gb|EGG69990.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           subsp. aureus 21193]
          Length = 514

 Score =  301 bits (772), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 170/446 (38%), Positives = 266/446 (59%), Gaps = 15/446 (3%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           F +K+YGCQMN +D+  +  +  + GY+    ++ AD+I++NTC IRE A  KV+S +G 
Sbjct: 70  FLIKTYGCQMNAHDTEVIAGILKALGYQATTDINTADVILINTCAIRENAENKVFSEIGN 129

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           +++LK    KE  D+L+ V GC++Q E    +IL+    V+++ G    + LPE+LE A 
Sbjct: 130 LKHLK----KERPDILIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHHLPEILEEAY 185

Query: 145 FGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             K +V   +S E D  E L  V     R+  + A++ I  GCDKFCT+C+VP+TRG E 
Sbjct: 186 LSKAMVVEVWSKEGDVIENLPKV-----REGNIKAWVNIMYGCDKFCTYCIVPFTRGKER 240

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR    ++DE R+L   G  EITLLGQNVN++ GK L   +    DLL ++S+I  + R+
Sbjct: 241 SRRPEDIIDEVRELAREGYKEITLLGQNVNSY-GKDLQDIEYDLGDLLQAISKI-AIPRV 298

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+TTSHP D +D +I    +   ++P++HLPVQSG++ +LK M R++T   Y  ++ RI+
Sbjct: 299 RFTTSHPWDFTDHMIDVISEGGNIVPHIHLPVQSGNNAVLKIMGRKYTRESYLDLVKRIK 358

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              P++A+++D IVG+P E+++ F  T+ L D++G+  A+++ YS R GTP + M + V 
Sbjct: 359 DRIPNVALTTDIIVGYPNESEEQFEETLTLYDEVGFEHAYTYLYSQRDGTPAAKMKDNVP 418

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVLNS 442
            +VK ERL  L KK+            GQ + VL E   K+  + L G +   + V   +
Sbjct: 419 LDVKKERLQRLNKKVGHYSQIAMSKYEGQTVTVLCEGSSKKDDQVLAGYTDKNKLVNFKA 478

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
               IG +++VRI + K  +L G  V
Sbjct: 479 PKEMIGKLVEVRIDEAKQYSLNGSFV 504


>gi|292669800|ref|ZP_06603226.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Selenomonas noxia ATCC
           43541]
 gi|292648597|gb|EFF66569.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Selenomonas noxia ATCC
           43541]
          Length = 444

 Score =  301 bits (772), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 163/445 (36%), Positives = 261/445 (58%), Gaps = 14/445 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R+ +  YGCQMN+ D+ RME    + GY R     +AD+I++NTC +RE A +KVY  +G
Sbjct: 11  RYKILVYGCQMNIADAERMEGQLQAAGYARTEETANADIILINTCCVRETAEDKVYGKIG 70

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            ++ +K    K    L+  +AGC+AQ EG+ ++RR+P ++ V+G      L  ++   R 
Sbjct: 71  EVKKIKEKNPK----LIFGIAGCMAQKEGDNLMRRAPHIDFVLGTGKVQELTRIIAEIRA 126

Query: 146 GKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
               VVD   S  +  E L +  GG       +A++ I  GC+ +CT+C+VPY RG E S
Sbjct: 127 EHSPVVDVALSDSEIAEDLPVARGG-----KFSAWVPIMYGCNNYCTYCIVPYVRGRERS 181

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R+  +VV E R+ +  G  E+TLLGQNVN++   G D ++  F+DLL  + E++G+ R+R
Sbjct: 182 RAPEEVVAEVRRAVAEGYREVTLLGQNVNSY---GKDHKEADFADLLRMVDEVEGIRRVR 238

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           + TSHP+D+SD LI        +  ++HLPVQ GS R+LK+MNR +T  +YR+   R+R 
Sbjct: 239 FMTSHPKDISDKLIDTIKSGAHICEHIHLPVQYGSSRLLKAMNRGYTVEKYRERALRVRE 298

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             P+ ++++D IVGFPGET++DF   +  + ++ Y  A++F YS R GTP + M  QV +
Sbjct: 299 ALPEASLTTDLIVGFPGETEEDFAQMLAFLREMRYDSAYTFLYSKRSGTPAATMANQVAD 358

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL-VGRSPWLQSVVLNSK 443
           +VK  RL  L ++      + N+  +G  +E+++E   K   ++  GR+   + V+    
Sbjct: 359 DVKHARLNRLMEEQNAISRAINERLMGAELEIMVEGASKNDPRVWSGRTRTNKIVLFPHG 418

Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468
               GD ++V+I   +   L GE+V
Sbjct: 419 AEREGDFVRVKINQPQTWLLKGEVV 443


>gi|283470508|emb|CAQ49719.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           subsp. aureus ST398]
          Length = 514

 Score =  301 bits (771), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 170/446 (38%), Positives = 266/446 (59%), Gaps = 15/446 (3%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           F +K+YGCQMN +D+  +  +  + GY+    ++ AD+I++NTC IRE A  KV+S +G 
Sbjct: 70  FLIKTYGCQMNAHDTEVIAGILEALGYQATTDINTADVILINTCAIRENAENKVFSEIGN 129

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           +++LK    KE  D+L+ V GC++Q E    +IL+    V+++ G    + LPE+LE A 
Sbjct: 130 LKHLK----KERPDILIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHHLPEILEEAY 185

Query: 145 FGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             K +V   +S E D  E L  V     R+  + A++ I  GCDKFCT+C+VP+TRG E 
Sbjct: 186 LSKAMVVEVWSKEGDVIENLPKV-----REGNIKAWVNIMYGCDKFCTYCIVPFTRGKER 240

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR    ++DE R+L   G  EITLLGQNVN++ GK L   +    DLL ++S+I  + R+
Sbjct: 241 SRRPEDIIDEVRELAREGYKEITLLGQNVNSY-GKDLQDIEYDLGDLLQAISKI-AIPRV 298

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+TTSHP D +D +I    +   ++P++HLPVQSG++ +LK M R++T   Y  ++ RI+
Sbjct: 299 RFTTSHPWDFTDHMIDVISEGGNIVPHIHLPVQSGNNAVLKIMGRKYTRESYLDLVKRIK 358

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              P++A+++D IVG+P E+++ F  T+ L D++G+  A+++ YS R GTP + M + V 
Sbjct: 359 DRIPNVALTTDIIVGYPNESEEQFEETLTLYDEVGFEHAYTYLYSQRDGTPAAKMKDNVP 418

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVLNS 442
            +VK ERL  L KK+            GQ + VL E   K+  + L G +   + V   +
Sbjct: 419 LDVKKERLQRLNKKVGHYSQIAMSKYEGQTVTVLCEGSSKKDDQVLAGYTDKNKLVNFKA 478

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
               IG +++VRI + K  +L G  V
Sbjct: 479 PKEMIGKLVEVRIDEAKQYSLNGSFV 504


>gi|269940783|emb|CBI49165.1| radical SAM superfamily protein [Staphylococcus aureus subsp.
           aureus TW20]
          Length = 514

 Score =  301 bits (771), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 170/446 (38%), Positives = 265/446 (59%), Gaps = 15/446 (3%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           F +K+YGCQMN +D+  +  +  + GY+    ++ AD+I++NTC IRE A  KV S +G 
Sbjct: 70  FLIKTYGCQMNAHDTEVIAGILEALGYQATTDINTADVILINTCAIRENAENKVLSEIGN 129

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           +++LK    KE  D+L+ V GC++Q E    +IL+    V+++ G    + LPE+LE A 
Sbjct: 130 LKHLK----KERPDILIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHHLPEILEEAY 185

Query: 145 FGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             K +V   +S E D  E L  V     R+  + A++ I  GCDKFCT+C+VP+TRG E 
Sbjct: 186 LSKAMVVEVWSKEGDVIENLPKV-----REGNIKAWVNIMYGCDKFCTYCIVPFTRGKER 240

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR    ++DE R+L   G  EITLLGQNVN++ GK L   +    DLL ++S+I  + R+
Sbjct: 241 SRRPEDIIDEVRELAREGYKEITLLGQNVNSY-GKDLQDIEYDLGDLLQAISKI-AIPRV 298

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+TTSHP D +D +I    +   ++P++HLPVQSG++ +LK M R++T   Y  ++ RI+
Sbjct: 299 RFTTSHPWDFTDHMIDVISEGGNIVPHIHLPVQSGNNAVLKIMGRKYTRESYLDLVKRIK 358

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              P++A+++D IVG+P E+++ F  T+ L D++G+  A+++ YS R GTP + M + V 
Sbjct: 359 DRIPNVALTTDIIVGYPNESEEQFEETLTLYDEVGFEHAYTYLYSQRDGTPAAKMKDNVP 418

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVLNS 442
            NVK ERL  L KK+            GQ + VL E   K+  + L G +   + V   +
Sbjct: 419 LNVKKERLQRLNKKVGHYSQIAMSKYEGQTVTVLCEGSSKKDDQVLAGYTDKNKLVNFKA 478

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
               IG +++VRI + K  +L G  +
Sbjct: 479 PKEMIGKLVEVRIDEAKQYSLNGSFI 504


>gi|49483455|ref|YP_040679.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus
           aureus subsp. aureus MRSA252]
 gi|253731911|ref|ZP_04866076.1| 2-methylthioadenine synthetase [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|257425346|ref|ZP_05601771.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           subsp. aureus 55/2053]
 gi|257428007|ref|ZP_05604405.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257430640|ref|ZP_05607022.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257433400|ref|ZP_05609758.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           subsp. aureus E1410]
 gi|257436242|ref|ZP_05612289.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           subsp. aureus M876]
 gi|258423867|ref|ZP_05686752.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           A9635]
 gi|282903847|ref|ZP_06311735.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           subsp. aureus C160]
 gi|282905610|ref|ZP_06313465.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           subsp. aureus Btn1260]
 gi|282908586|ref|ZP_06316416.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           subsp. aureus WW2703/97]
 gi|282910864|ref|ZP_06318667.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           subsp. aureus WBG10049]
 gi|282914069|ref|ZP_06321856.1| tRNA-I(6)A37 modification enzyme MiaB [Staphylococcus aureus subsp.
           aureus M899]
 gi|282918991|ref|ZP_06326726.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           subsp. aureus C427]
 gi|282924114|ref|ZP_06331790.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           subsp. aureus C101]
 gi|283958035|ref|ZP_06375486.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           subsp. aureus A017934/97]
 gi|293501101|ref|ZP_06666952.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           subsp. aureus 58-424]
 gi|293510063|ref|ZP_06668771.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           subsp. aureus M809]
 gi|293526649|ref|ZP_06671334.1| tRNA-I(6)A37 modification enzyme MiaB [Staphylococcus aureus subsp.
           aureus M1015]
 gi|295427779|ref|ZP_06820411.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           subsp. aureus EMRSA16]
 gi|297591263|ref|ZP_06949901.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           subsp. aureus MN8]
 gi|81651243|sp|Q6GHE3|MIAB_STAAR RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|49241584|emb|CAG40270.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|253724321|gb|EES93050.1| 2-methylthioadenine synthetase [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|257271803|gb|EEV03941.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           subsp. aureus 55/2053]
 gi|257274848|gb|EEV06335.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257278768|gb|EEV09387.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257281493|gb|EEV11630.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           subsp. aureus E1410]
 gi|257284524|gb|EEV14644.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           subsp. aureus M876]
 gi|257845896|gb|EEV69925.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           A9635]
 gi|282314086|gb|EFB44478.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           subsp. aureus C101]
 gi|282316801|gb|EFB47175.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           subsp. aureus C427]
 gi|282322137|gb|EFB52461.1| tRNA-I(6)A37 modification enzyme MiaB [Staphylococcus aureus subsp.
           aureus M899]
 gi|282325469|gb|EFB55778.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           subsp. aureus WBG10049]
 gi|282327648|gb|EFB57931.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           subsp. aureus WW2703/97]
 gi|282330902|gb|EFB60416.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           subsp. aureus Btn1260]
 gi|282595465|gb|EFC00429.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           subsp. aureus C160]
 gi|283790184|gb|EFC29001.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           subsp. aureus A017934/97]
 gi|290920721|gb|EFD97784.1| tRNA-I(6)A37 modification enzyme MiaB [Staphylococcus aureus subsp.
           aureus M1015]
 gi|291096106|gb|EFE26367.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           subsp. aureus 58-424]
 gi|291467007|gb|EFF09525.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           subsp. aureus M809]
 gi|295128137|gb|EFG57771.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           subsp. aureus EMRSA16]
 gi|297576149|gb|EFH94865.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           subsp. aureus MN8]
 gi|298694584|gb|ADI97806.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           ED133]
 gi|302332898|gb|ADL23091.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus
           aureus subsp. aureus JKD6159]
 gi|312438327|gb|ADQ77398.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           subsp. aureus TCH60]
 gi|315194179|gb|EFU24572.1| hypothetical protein CGSSa00_05748 [Staphylococcus aureus subsp.
           aureus CGS00]
 gi|323441074|gb|EGA98781.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus
           aureus O11]
          Length = 514

 Score =  301 bits (771), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 170/446 (38%), Positives = 266/446 (59%), Gaps = 15/446 (3%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           F +K+YGCQMN +D+  +  +  + GY+    ++ AD+I++NTC IRE A  KV+S +G 
Sbjct: 70  FLIKTYGCQMNAHDTEVIAGILEALGYQATTDINTADVILINTCAIRENAENKVFSEIGN 129

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           +++LK    KE  D+L+ V GC++Q E    +IL+    V+++ G    + LPE+LE A 
Sbjct: 130 LKHLK----KERPDILIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHHLPEILEEAY 185

Query: 145 FGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             K +V   +S E D  E L  V     R+  + A++ I  GCDKFCT+C+VP+TRG E 
Sbjct: 186 LSKAMVVEVWSKEGDVIENLPKV-----REGNIKAWVNIMYGCDKFCTYCIVPFTRGKER 240

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR    ++DE R+L   G  EITLLGQNVN++ GK L   +    DLL ++S+I  + R+
Sbjct: 241 SRRPEDIIDEVRELAREGYKEITLLGQNVNSY-GKDLQDIEYDLGDLLQAISKI-AIPRV 298

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+TTSHP D +D +I    +   ++P++HLPVQSG++ +LK M R++T   Y  ++ RI+
Sbjct: 299 RFTTSHPWDFTDHMIDVISEGGNIVPHIHLPVQSGNNAVLKIMGRKYTRESYLDLVKRIK 358

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              P++A+++D IVG+P E+++ F  T+ L D++G+  A+++ YS R GTP + M + V 
Sbjct: 359 DRIPNVALTTDIIVGYPNESEEQFEETLTLYDEVGFEHAYTYLYSQRDGTPAAKMKDNVP 418

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVLNS 442
            +VK ERL  L KK+            GQ + VL E   K+  + L G +   + V   +
Sbjct: 419 LDVKKERLQRLNKKVGHYSQIAMSKYEGQTVTVLCEGSSKKDDQVLAGYTDKNKLVNFKA 478

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
               IG +++VRI + K  +L G  V
Sbjct: 479 PKEMIGKLVEVRIDEAKQYSLNGSFV 504


>gi|284992297|ref|YP_003410851.1| RNA modification enzyme, MiaB family [Geodermatophilus obscurus DSM
           43160]
 gi|284065542|gb|ADB76480.1| RNA modification enzyme, MiaB family [Geodermatophilus obscurus DSM
           43160]
          Length = 483

 Score =  301 bits (771), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 165/412 (40%), Positives = 245/412 (59%), Gaps = 18/412 (4%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           + V++YGCQMNV+DS R+  +  + GY      +DAD++VLNTC +RE A  ++Y  LG 
Sbjct: 12  YRVRTYGCQMNVHDSERLSGLLEAAGYAAAPEGEDADVVVLNTCAVRENADNRLYGNLGH 71

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           +R +K+ R      + + V GC+AQ +  EI+RR+P V+VV G      LP LLERAR  
Sbjct: 72  LRPVKDGRPG----MQIAVGGCLAQKDRGEIVRRAPWVDVVFGTHNVGSLPALLERARH- 126

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKR--GVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
               + +  VE   E L +       KR    + +++I  GC+  CTFC+VP  RG E  
Sbjct: 127 ----NAEAQVEIA-EALEVFPSTLPAKRDSAYSGWVSISVGCNNTCTFCIVPALRGKERD 181

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R   +++ E + L+D GV E+TLLGQNVNA+  +  D  +  F+DLL +   I GL R+R
Sbjct: 182 RRPGEILAEVQALVDQGVLEVTLLGQNVNAYGVEFRD--RGAFADLLRATGRIDGLERVR 239

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +T+ HPR+ +D +I A  +   +   LH+P+QSGSD +L+ M R +    Y  IIDR+R+
Sbjct: 240 FTSPHPREFTDDVITAMAETPAVCHQLHMPLQSGSDDVLRRMRRGYRQDRYLGIIDRVRA 299

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             PD AI++D IVGFPGET+ DF  T+D+V +  ++ AF+F+YS R GTP + M  Q+ +
Sbjct: 300 AMPDAAITTDIIVGFPGETEADFEQTLDVVRQARFSSAFTFQYSKRPGTPAAGMEGQLPK 359

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE----KHGKEKGKLVGRS 432
            V  ER L L     E   + N A VG+ +E+L+         ++G+L GR+
Sbjct: 360 EVVQERYLRLTALQDEISWAENRAQVGRTVELLVAAGEGSKDAQRGRLSGRA 411


>gi|82750892|ref|YP_416633.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus
           aureus RF122]
 gi|123727480|sp|Q2YXS2|MIAB_STAAB RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|82656423|emb|CAI80843.1| conserved hypothetical protein [Staphylococcus aureus RF122]
          Length = 514

 Score =  301 bits (771), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 170/446 (38%), Positives = 266/446 (59%), Gaps = 15/446 (3%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           F +K+YGCQMN +D+  +  +  + GY+    ++ AD+I++NTC IRE A  KV+S +G 
Sbjct: 70  FLIKTYGCQMNAHDTEVIAGILEALGYQATTDINTADVILINTCAIRENAENKVFSEIGN 129

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           +++LK    KE  D+L+ V GC++Q E    +IL+    V+++ G    + LPE+LE A 
Sbjct: 130 LKHLK----KERPDILIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHHLPEILEEAY 185

Query: 145 FGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             K +V   +S E D  E L  V     R+  + A++ I  GCDKFCT+C+VP+TRG E 
Sbjct: 186 LSKAMVVEVWSKEGDVIENLPKV-----REGNIKAWVNIMYGCDKFCTYCIVPFTRGKER 240

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR    ++DE R+L   G  EITLLGQNVN++ GK L   +    DLL ++S+I  + R+
Sbjct: 241 SRRPEDIIDEVRELAREGYKEITLLGQNVNSY-GKDLQDIEYDLGDLLQAISKI-AIPRV 298

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+TTSHP D +D +I    +   ++P++HLPVQSG++ +LK M R++T   Y  ++ RI+
Sbjct: 299 RFTTSHPWDFTDHMIDVISEGGNIVPHIHLPVQSGNNAVLKIMGRKYTRESYLDLVKRIK 358

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              P++A+++D IVG+P E+++ F  T+ L D++G+  A+++ YS R GTP + M + V 
Sbjct: 359 DRIPNVALTTDIIVGYPNESEEQFEETLTLYDEVGFEHAYTYLYSQRDGTPAAKMKDNVP 418

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVLNS 442
            +VK ERL  L KK+            GQ + VL E   K+  + L G +   + V   +
Sbjct: 419 LDVKKERLQRLNKKVGHYSQIAMSKYEGQTVTVLCEGSSKKDDQVLAGYTDKNKLVNFKA 478

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
               IG +++VRI + K  +L G  V
Sbjct: 479 PKEMIGKLVEVRIDEAKQYSLNGSFV 504


>gi|323443943|gb|EGB01554.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus
           aureus O46]
          Length = 514

 Score =  301 bits (771), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 170/446 (38%), Positives = 266/446 (59%), Gaps = 15/446 (3%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           F +K+YGCQMN +D+  +  +  + GY+    ++ AD+I++NTC IRE A  KV+S +G 
Sbjct: 70  FLIKTYGCQMNAHDTEVIAGILDALGYQATTDINTADVILINTCAIRENAENKVFSEIGN 129

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           +++LK    KE  D+L+ V GC++Q E    +IL+    V+++ G    + LPE+LE A 
Sbjct: 130 LKHLK----KERPDILIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHHLPEILEEAY 185

Query: 145 FGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             K +V   +S E D  E L  V     R+  + A++ I  GCDKFCT+C+VP+TRG E 
Sbjct: 186 LSKAMVVEVWSKEGDVIENLPKV-----REGNIKAWVNIMYGCDKFCTYCIVPFTRGKER 240

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR    ++DE R+L   G  EITLLGQNVN++ GK L   +    DLL ++S+I  + R+
Sbjct: 241 SRRPEDIIDEVRELAREGYKEITLLGQNVNSY-GKDLQDIEYDLGDLLQAISKI-AIPRV 298

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+TTSHP D +D +I    +   ++P++HLPVQSG++ +LK M R++T   Y  ++ RI+
Sbjct: 299 RFTTSHPWDFTDHMIDVISEGGNIVPHIHLPVQSGNNAVLKIMGRKYTRESYLDLVKRIK 358

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              P++A+++D IVG+P E+++ F  T+ L D++G+  A+++ YS R GTP + M + V 
Sbjct: 359 DRIPNVALTTDIIVGYPNESEEQFEETLTLYDEVGFEHAYTYLYSQRDGTPAAKMKDNVP 418

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVLNS 442
            +VK ERL  L KK+            GQ + VL E   K+  + L G +   + V   +
Sbjct: 419 LDVKKERLQRLNKKVGHYSQIAMSKYEGQTVTVLCEGSSKKDDQVLAGYTDKNKLVNFKA 478

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
               IG +++VRI + K  +L G  V
Sbjct: 479 PKEMIGKLVEVRIDEAKQYSLNGSFV 504


>gi|258511464|ref|YP_003184898.1| RNA modification enzyme, MiaB family [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257478190|gb|ACV58509.1| RNA modification enzyme, MiaB family [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 497

 Score =  301 bits (770), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 169/448 (37%), Positives = 264/448 (58%), Gaps = 14/448 (3%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P RF +++YGCQMN +D+  M  +  + GYE  +  ++AD I+ NTC +RE A EKV+  
Sbjct: 54  PYRFLIRTYGCQMNEHDTEVMAGLLTAMGYEPTHDAEEADFILFNTCAVRENAEEKVFGE 113

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRS--PIVNVVVGPQTYYRLPELLE 141
           +GR+R LK    ++  +L+  + GC+AQ +G + + R   P +++V G    +RLP LL 
Sbjct: 114 IGRLRPLK----RQNPELIFGLCGCMAQEKGVQRMVREKYPWIDLVFGTHNIHRLPALLF 169

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
            AR  +  V     V D     ++ D    RK  V A++ +Q GC+KFCT+C+VPYTRG+
Sbjct: 170 AARASQETV---MEVWDNAPE-TVEDWPKLRKDRVRAWVNVQYGCNKFCTYCIVPYTRGV 225

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR    V+ E  +L+  G  +ITLLGQNVN +   G+D     F+ LL  ++ + G+ 
Sbjct: 226 ERSRLPEDVLREVAELVQEGYQDITLLGQNVNDY---GVDLGTTNFARLLRQVNAVPGVG 282

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
            +R+TTS+P + +D LI A  + + ++ ++HLPVQSG++ IL+ MNR HT   Y +++D+
Sbjct: 283 WIRFTTSNPWNFTDELIDAIAESENVVEHIHLPVQSGNNEILRRMNRSHTREYYLRLVDK 342

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           IRS  P ++I++D IVGFPGET+  F+ T+ LV ++ +  AF+F YSPR  TP +   + 
Sbjct: 343 IRSRIPGVSITTDLIVGFPGETEAHFQDTLRLVREVEFDNAFTFIYSPRENTPAARWNDD 402

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440
                K ERL+ L +   E     N+   G ++EVL++   K     L GR+   + V+ 
Sbjct: 403 TPLEEKKERLMRLNEVQNEISRRHNEKLRGTLLEVLVDGESKTNPDVLSGRTRTNKLVLF 462

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 IG  I+VR+T+ +   L GE+ 
Sbjct: 463 RGDKSLIGQRIRVRVTEPQTFLLKGEIA 490


>gi|229025211|ref|ZP_04181635.1| hypothetical protein bcere0029_35140 [Bacillus cereus AH1272]
 gi|228736144|gb|EEL86715.1| hypothetical protein bcere0029_35140 [Bacillus cereus AH1272]
          Length = 425

 Score =  301 bits (770), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 173/429 (40%), Positives = 254/429 (59%), Gaps = 15/429 (3%)

Query: 44  MEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLV 103
           M  +F + GYE   S +DAD+++LNTC IRE A  KV+  LG +++LK    +   DLL+
Sbjct: 1   MAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGHLKSLK----RRNPDLLI 56

Query: 104 VVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVE-DKF 160
            V GC++Q E    +I++++  V++V G    +RLP +L+ A F K  V   +S E D  
Sbjct: 57  GVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKETVVEVWSKEGDVI 116

Query: 161 ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN 220
           E L  V     R+  + A++ I  GCDKFCT+C+VPYTRG E SR    ++ E R L  N
Sbjct: 117 ENLPKV-----RRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEIRHLAAN 171

Query: 221 GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKA 280
           G  EITLLGQNVNA+ GK  +  +    DL+  L ++  + R+R+TTSHPRD  D LI+ 
Sbjct: 172 GYKEITLLGQNVNAY-GKDFEDFEYGLGDLMDELRKVD-IARIRFTTSHPRDFDDHLIEV 229

Query: 281 HGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFP 340
            G    L+ ++HLPVQSGS  +LK M R+++   Y +++ +I+   P+   ++D IVGFP
Sbjct: 230 LGKAGNLVEHIHLPVQSGSTEMLKIMARKYSREHYLELVRKIKEAIPNAVFTTDIIVGFP 289

Query: 341 GETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLRE 400
            ETD+ F  TM L  ++G+  AF+F YSPR GTP + M + V   VK ERL  L   +  
Sbjct: 290 NETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERLQRLNTLVNT 349

Query: 401 QQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVLNSKNHNIGDIIKVRITDVK 459
             +  N+   GQI+EVL++   K   + L G +   + V   +    IG ++KV++T+ K
Sbjct: 350 LAIEKNNRYKGQIVEVLVDGESKNNPEVLAGYTRTNKLVNFVASKSLIGQLVKVKVTEAK 409

Query: 460 ISTLYGELV 468
             +L GELV
Sbjct: 410 TWSLNGELV 418


>gi|258654111|ref|YP_003203267.1| RNA modification enzyme, MiaB family [Nakamurella multipartita DSM
           44233]
 gi|258557336|gb|ACV80278.1| RNA modification enzyme, MiaB family [Nakamurella multipartita DSM
           44233]
          Length = 508

 Score =  301 bits (770), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 161/413 (38%), Positives = 244/413 (59%), Gaps = 20/413 (4%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           + V+++GCQMNV+DS R+  +    GY   +  D AD++V NTC +RE A  K+Y  LG 
Sbjct: 11  YQVRTFGCQMNVHDSERLSGLLEGAGYRAADDGDPADVVVFNTCAVRENADNKLYGNLGH 70

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           + ++K  R      + + V GC+AQ +  EI+RR+P V+VV G      LP LLERAR  
Sbjct: 71  LASVKAKRPG----MQIAVGGCLAQKDRGEIVRRAPWVDVVFGTHNVGSLPTLLERARH- 125

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRG--VTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
                 + +  +  + L +       KR      +++I  GC+  CTFC+VP  RG E  
Sbjct: 126 -----YEQAQVEILDALEVFPSSLPAKRDSHYAGWVSISVGCNNTCTFCIVPSLRGKEAD 180

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRL 263
           R    V+ E + L+D+GV E+TLLGQNVN++   G+  G++  F  LL +   I GL R+
Sbjct: 181 RRPGDVLAEVQMLVDDGVLEVTLLGQNVNSY---GVQFGDRQAFGKLLRACGAIDGLERV 237

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+T+ HP+D +  +I+A      +   LH+P+QSGSDR+LK+M R + +  Y  I+D +R
Sbjct: 238 RFTSPHPKDFTPDVIEAMAQTPNVCHQLHMPLQSGSDRVLKAMRRSYRSTRYLAILDEVR 297

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           +  PD AI++D IVGFPGETD+DF  T+D+V +  +A AF+F+YSPR GTP + + +QV 
Sbjct: 298 AAMPDAAITTDIIVGFPGETDEDFEQTLDVVRRSRFAGAFTFQYSPRPGTPAATLPDQVP 357

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE----KHGKEKGKLVGRS 432
             V AER   L + + E  ++ N   VG+ +E+L+     +     G+L GR+
Sbjct: 358 PEVVAERFGRLTEIVTESALTENQRQVGRTVELLVSAGEGRKDNSSGRLTGRA 410


>gi|33240828|ref|NP_875770.1| 2-methylthioadenine synthetase [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
 gi|81664182|sp|Q7VAS5|MIAB_PROMA RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|33238357|gb|AAQ00423.1| 2-methylthioadenine synthetase [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
          Length = 466

 Score =  301 bits (770), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 173/455 (38%), Positives = 269/455 (59%), Gaps = 25/455 (5%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           +++ ++GCQMN  DS RM  +  + GY++  +   ADL++ NTC IR+ A +KVYS+LGR
Sbjct: 23  YWITTFGCQMNKADSERMAGILQAMGYQKAKTELCADLVLYNTCTIRDNAEQKVYSYLGR 82

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
               +  R K    L +VVAGCVAQ EGE +LRR P +++V+GPQ   RL +LL +   G
Sbjct: 83  ----QAIRKKSSPHLKLVVAGCVAQQEGESLLRRVPELDLVMGPQHANRLEDLLNQVDNG 138

Query: 147 KRVVDTDYSVEDKFERLSIVD-GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           ++VV T+       E L + D     R   + A++ +  GC++ CT+CVVP  RG E SR
Sbjct: 139 QQVVATE-------EHLILEDLTAARRDSNICAWVNVIYGCNERCTYCVVPSVRGKEQSR 191

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG------EKCTFSDLLYSLSEIKG 259
               +  E   L   G  E+TLLGQN++A+ G+ L G       + T +DLLY + +I G
Sbjct: 192 EPKAIKLEIEDLAKKGFKEVTLLGQNIDAY-GRDLPGISSSGRRENTLTDLLYFIHDING 250

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           + R+R+ TSHPR  +  LI+A  +L  L  + H+P QSG + +LK M R +T  +YR+II
Sbjct: 251 INRIRFATSHPRYFTTRLIEACAELPKLCEHFHIPFQSGDNEVLKRMGRGYTIEKYRRII 310

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
           D+IR + P+ +ISSD IV FPGE +  F+ T+ ++ +IG+ Q  +  YS R  TP ++  
Sbjct: 311 DKIRELMPNSSISSDVIVAFPGEDESQFQNTLKIIREIGFDQVNTAAYSQRPNTPAASWA 370

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRS-----P 433
           EQ+ E+VK +RL  L   + +     N     QI+EVL E  + K + +L+GR+      
Sbjct: 371 EQLPESVKIDRLKELNLLVEQTAKDKNTRYHNQIVEVLAEGINPKNQEQLMGRTRTNRLT 430

Query: 434 WLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           +   +     ++N GD++KV+I++++  +L G  +
Sbjct: 431 FFSKIGPKKYSYNPGDLVKVKISEIRAFSLTGSPI 465


>gi|302558013|ref|ZP_07310355.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Streptomyces griseoflavus
           Tu4000]
 gi|302475631|gb|EFL38724.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Streptomyces griseoflavus
           Tu4000]
          Length = 505

 Score =  301 bits (770), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 179/456 (39%), Positives = 264/456 (57%), Gaps = 28/456 (6%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERV--NSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + V++YGCQMNV+DS R+  +    GY R    S  DAD++V NTC +RE A  K+Y  L
Sbjct: 16  YEVRTYGCQMNVHDSERLSGLLEDAGYVRAPEGSDGDADVVVFNTCAVRENADNKLYGNL 75

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           G +   K SR      + + V GC+AQ + + I++R+P V+VV G     +LP LLERAR
Sbjct: 76  GHLAPKKASRP----GMQIAVGGCLAQKDRDTIVKRAPWVDVVFGTHNIGKLPVLLERAR 131

Query: 145 FGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             +   V+   S+E     L        R+    A+++I  GC+  CTFC+VP  RG E 
Sbjct: 132 VQEEAQVEIAESLEAFPSTLPT-----RRESAYAAWVSISVGCNNTCTFCIVPALRGKEK 186

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVR 262
            R    ++ E   L+  GV EITLLGQNVNA+   G D G++  FS LL +  +I GL R
Sbjct: 187 DRRTGDILAEIEALVAEGVSEITLLGQNVNAY---GSDIGDREAFSKLLRACGKIDGLER 243

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+T+ HPRD +D +I A  +   +MP LH+P+QSGSD +LK+M R +    Y  II+++
Sbjct: 244 VRFTSPHPRDFTDDVIAAMAETPNVMPQLHMPLQSGSDPVLKAMRRSYRQERYLGIIEKV 303

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+  P  AIS+D IVGFPGET++DF  T+ +V +  +AQAF+F+YS R GTP + M  Q+
Sbjct: 304 RAAIPHAAISTDIIVGFPGETEEDFEQTLHVVREARFAQAFTFQYSKRPGTPAAEMDGQI 363

Query: 383 DENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKE---KGKLVGRSPWL 435
            + V   + ERL+ LQ+ +  ++   N   VG+ +E+++ E  G++     +L GR+P  
Sbjct: 364 PKKVVQERYERLVELQEAISWEE---NKKQVGRTLELMVAEGEGRKDDATHRLSGRAPDS 420

Query: 436 QSVVLNSKNHNI--GDIIKVRITDVKISTLYGELVV 469
           + V        +  GD++ V IT      L  E  V
Sbjct: 421 RLVHFTKPEQEVRPGDVVTVEITYAAPHHLLAEGAV 456


>gi|262202141|ref|YP_003273349.1| RNA modification enzyme, MiaB family [Gordonia bronchialis DSM
           43247]
 gi|262085488|gb|ACY21456.1| RNA modification enzyme, MiaB family [Gordonia bronchialis DSM
           43247]
          Length = 528

 Score =  301 bits (770), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 160/417 (38%), Positives = 245/417 (58%), Gaps = 22/417 (5%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           + V++YGCQMNV+DS R+  +    GY R    D ADL+V NTC IRE A  K+Y  L  
Sbjct: 32  YQVRTYGCQMNVHDSERIAGLLEDAGYVRAAEDDAADLVVFNTCAIRENADNKLYGNLSH 91

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           +  +K+ R      + + V GC+AQ + + +L+R+P V+VV G      LP LL+RAR  
Sbjct: 92  LAPVKSRRPG----MQIAVGGCLAQKDKDTVLKRAPWVDVVFGTHNIGSLPALLDRARHN 147

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
                 +  + D  ER         R    + ++++  GC+  CTFC+VP  RG E+ R 
Sbjct: 148 DAA---EVEILDALERFPSTLPA-KRDSAYSGWVSVSVGCNNTCTFCIVPSLRGKEVDRR 203

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE----KCTFSDLLYSLSEIKGLVR 262
              ++ E   L+D GV E+TLLGQNVNA+     D E    +  F+DLL +   I GL R
Sbjct: 204 PGDILAEVTALVDQGVLEVTLLGQNVNAYGMSFADPELPRDRGAFADLLRACGRIDGLER 263

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+T+ HP + +D +I A      + P LH+P+QSGSDR+L++M R +    +  I+D++
Sbjct: 264 VRFTSPHPAEFTDDVIDAMAQTPNVCPQLHMPLQSGSDRVLRAMRRSYRRTRFLGILDKV 323

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+  P  AI++D IVGFPGET++DF  T+D+V++  ++ AF+F+YSPR GTP + M +QV
Sbjct: 324 RAAMPHAAITTDIIVGFPGETEEDFAETLDVVEQARFSSAFTFQYSPRPGTPAATMPDQV 383

Query: 383 DENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLI----EKHGKEKGKLVGRS 432
              V +E   RL+ LQ+++    +S N++ VG  +E+L+     +     G+L GR+
Sbjct: 384 PPEVVSERYQRLIALQERI---CLSENESLVGSAVELLVVDDDGRKSARTGRLTGRA 437


>gi|119489699|ref|ZP_01622458.1| tRNA-i(6)A37 modification enzyme MiaB [Lyngbya sp. PCC 8106]
 gi|119454436|gb|EAW35585.1| tRNA-i(6)A37 modification enzyme MiaB [Lyngbya sp. PCC 8106]
          Length = 452

 Score =  301 bits (770), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 176/456 (38%), Positives = 276/456 (60%), Gaps = 23/456 (5%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
            P+R+ + ++GCQMN  DS RM  +    G       ++AD+++ NTC IR+ A  KVYS
Sbjct: 4   TPRRYHITTFGCQMNKADSERMAGILEEMGLLFTADPNEADVVLYNTCTIRDNAEHKVYS 63

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
           +LGR    +  R  +  +L +++AGCVAQ EG+ +LRR P +++V+GPQ   RL ELLE+
Sbjct: 64  YLGR----QAKRKHKQPNLTLILAGCVAQQEGQTLLRRVPELDLVMGPQHANRLQELLEQ 119

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKR--GVTAFLTIQEGCDKFCTFCVVPYTRG 200
              G +VV T        E + IV+     +R   VTA++ +  GC++ CT+CVVP  RG
Sbjct: 120 VDEGNQVVAT--------EPIHIVEDITKPRRDSNVTAWVNVIYGCNERCTYCVVPNVRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG------EKCTFSDLLYSL 254
           IE SR+   +  E  +L   G  EITLLGQN++A+ G+ L G       K T +DLL  +
Sbjct: 172 IEQSRTPEAIRSEMEELGRLGYKEITLLGQNIDAY-GRDLPGSTPEGRHKHTLTDLLSFV 230

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
            ++ G+ RLR+ TSHPR  ++ LIKA  +L  +  + H+P QSG ++ILK+M+R +T  +
Sbjct: 231 HDVPGIERLRFATSHPRYFTERLIKACAELPKVCEHFHIPFQSGDNQILKAMSRGYTHEK 290

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
           YR+II+ +R   PD +IS+D IVGFPGET++ F  T+ LVD IG+    +  YSPR GTP
Sbjct: 291 YRRIINTVREYMPDASISADAIVGFPGETEEQFENTLKLVDDIGFDLLNTAAYSPRPGTP 350

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSP 433
            +    QV ++VKA+RL  L   +  +    +    G+I EVL+E ++ ++  +++GR+ 
Sbjct: 351 AALWENQVPDDVKADRLQQLNHLVGVKAAERSQRYFGRIEEVLVEGENPRDPSQVMGRTR 410

Query: 434 WLQ-SVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
             + +  + +     G ++KV++T+V+  +L  E +
Sbjct: 411 GNRLTFFVGNLAELKGKVLKVKVTEVRPFSLTAEAI 446


>gi|219668765|ref|YP_002459200.1| (dimethylallyl)adenosine tRNA methylthiotransferase
           [Desulfitobacterium hafniense DCB-2]
 gi|219539025|gb|ACL20764.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Desulfitobacterium
           hafniense DCB-2]
          Length = 447

 Score =  301 bits (770), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 162/447 (36%), Positives = 261/447 (58%), Gaps = 14/447 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           VP++    +YGCQM+  D+  + ++   +GY R   ++ ADLI++NTC +RE A  K+  
Sbjct: 6   VPKKVVTLAYGCQMSERDADTLTEISSQKGYVRSQELEQADLIIVNTCCVRESAENKILG 65

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELL 140
            +G +++LK +  +    L + ++GC+ Q  G  E + +R+P V++  G    +    LL
Sbjct: 66  KIGELKHLKEANPQ----LKIAISGCMVQQPGALERLRKRAPHVDIWAGTHNIHEFQRLL 121

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           E A    +V +      +  E + +   G      + A++ I  GC+ FCT+C+VP+ RG
Sbjct: 122 EEAEEKGKVAEVWEKPRETQESVLLAAKG-----KLKAYVNISYGCNNFCTYCIVPHVRG 176

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E SR   +++ E R L++ G  E+TLLGQNVN++ G+ LD     F+DLL  +  I GL
Sbjct: 177 RERSRQPEEILAEIRALVETGCREVTLLGQNVNSY-GQDLD-RAYDFADLLKDVDSIDGL 234

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+ TSHP+D+SD LI+       L  ++HLP Q+GSD ILK MNR++T   Y   I 
Sbjct: 235 WRVRFMTSHPKDLSDKLIETIAAGTHLCEHIHLPFQAGSDEILKGMNRKYTREYYLSRIA 294

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           +I+++ P +++++D IVGFPGET++DF  T+ L+ ++ Y+QAF+F YS R GTP + M E
Sbjct: 295 QIKAIIPQVSLTTDIIVGFPGETEEDFEQTLALIRQVKYSQAFTFMYSKRSGTPAAQMAE 354

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439
           Q+  ++K  RL  L      Q +++    +G+  EVL+E   K    +L GR+   + VV
Sbjct: 355 QIPLDIKKRRLQQLITVQNAQSLAWRQEMIGKTCEVLVEGPSKSNPDRLTGRTRGYELVV 414

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGE 466
              +   IG +++V I D    TL+GE
Sbjct: 415 FPGEAQLIGTLVQVLIQDANSWTLFGE 441


>gi|299535293|ref|ZP_07048616.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Lysinibacillus
           fusiformis ZC1]
 gi|298729275|gb|EFI69827.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Lysinibacillus
           fusiformis ZC1]
          Length = 517

 Score =  301 bits (770), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 171/448 (38%), Positives = 262/448 (58%), Gaps = 15/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + + + +YGCQMN +D+  M  +F   GY     +++AD+++LNTC IRE A  KV+  L
Sbjct: 71  KSYHIMTYGCQMNEHDTEVMAGIFMQLGYTPTEVIEEADVVLLNTCAIRENAENKVFGEL 130

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G +   K    ++  ++L+ V GC++Q E    +ILR  P V++V G    +RLP +L+ 
Sbjct: 131 GFLLKYK----RKNPEMLIGVCGCMSQEESVVNKILRSYPHVDMVFGTHNIHRLPNILKE 186

Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           A   K +V   +S E D  E L        R   + A++ I  GCDKFCT+C+VPYTRG 
Sbjct: 187 AYMSKEMVIEVWSKEGDVIENLP-----KKRLGSIKAWVNIMYGCDKFCTYCIVPYTRGK 241

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR   +++ E R+L   G  EI LLGQNVNA+ GK  +       DL+  L +I  + 
Sbjct: 242 ERSRRPEEIIAEVRELAAAGYKEIMLLGQNVNAY-GKDFEDIDYRLGDLMDELRKID-IP 299

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHPRD  D LI+       L+ ++HLPVQSGS+ +LK M R++T   +  ++DR
Sbjct: 300 RIRFTTSHPRDFDDHLIEVLAKRGNLVEHIHLPVQSGSNDVLKIMARKYTREHFLGLVDR 359

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I++  P++ +++D IVG+P ET++ F  T+ L  ++G+  AF++ YSPR GTP + M++ 
Sbjct: 360 IKAAIPEVTLTTDIIVGYPNETEEQFEETLSLYREVGFDAAFTYIYSPREGTPAAKMIDN 419

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440
           V E VK ERL  L + + E      +   GQ++EVL+E   K +   L G +   + V  
Sbjct: 420 VPEEVKKERLQRLNEVVGEYSRKALERLNGQVVEVLVEGTSKRRDDVLAGYTRKNRLVNF 479

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
            +    IG ++KV+IT+    +L GE V
Sbjct: 480 KAPAEVIGQLVKVKITETTSYSLTGEFV 507


>gi|319401418|gb|EFV89628.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
           epidermidis FRI909]
          Length = 517

 Score =  301 bits (770), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 170/446 (38%), Positives = 264/446 (59%), Gaps = 15/446 (3%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           F +K+YGCQMN +D+  M  +  + GY   + +++AD+I++NTC IRE A  KV+S +G 
Sbjct: 70  FLIKTYGCQMNAHDTEVMAGILNALGYSATSDINEADVILINTCAIRENAENKVFSEIGN 129

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           +++LK    KE  D L+ V GC++Q E    +IL+    V++V G    + LPE+LE A 
Sbjct: 130 LKHLK----KERPDCLIGVCGCMSQEESVVNKILKSYQNVDMVFGTHNIHHLPEILEEAY 185

Query: 145 FGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             K +V   +S E D  E L  V  G+     + A++ I  GCDKFCT+C+VP+TRG E 
Sbjct: 186 LSKAMVVEVWSKEGDIIENLPKVRDGH-----IKAWVNIMYGCDKFCTYCIVPFTRGKER 240

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR    ++DE R+L   G  EITLLGQNVN++ GK ++G      DLL  +S+I  + R+
Sbjct: 241 SRRPEDIIDEVRELAREGYQEITLLGQNVNSY-GKDIEGLDYELGDLLEDISKID-IPRV 298

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+TTSHP D +D +I+       ++P++HLPVQSG++++LK M R++T   Y  ++ RI+
Sbjct: 299 RFTTSHPWDFTDRMIEVIAKGGNIVPHIHLPVQSGNNQVLKIMGRKYTRESYLDLVSRIK 358

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              P++A+++D IVG+P ET++ F  T+ L D + +  A+++ YS R GTP + M + V 
Sbjct: 359 EAIPNVALTTDIIVGYPNETEEQFEETLTLYDDVQFEHAYTYLYSQRDGTPAAKMKDNVP 418

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSPWLQSVVLNS 442
             VK ERL  L KK+            G+I+ VL E    K++  L G +   + V    
Sbjct: 419 LEVKKERLQRLNKKVGMYSQQAMSQYEGKIVTVLCEGSSKKDENVLAGYTDKNKLVNFKG 478

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
              +IG ++ V+I + K  +L G  +
Sbjct: 479 PRESIGKLVDVKIDEAKQYSLNGTFI 504


>gi|294791811|ref|ZP_06756959.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Veillonella sp. 6_1_27]
 gi|294793672|ref|ZP_06758809.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Veillonella sp. 3_1_44]
 gi|294455242|gb|EFG23614.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Veillonella sp. 3_1_44]
 gi|294457041|gb|EFG25403.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Veillonella sp. 6_1_27]
          Length = 437

 Score =  301 bits (770), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 166/450 (36%), Positives = 259/450 (57%), Gaps = 21/450 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + +++ +YGCQMN  DS R+     S GY    +++ ADLI+LNTC +RE A  KVY  +
Sbjct: 2   KSYYIYTYGCQMNTADSERLSHQLESVGYIPTENVETADLILLNTCAVRENAETKVYGRI 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           G ++ LK    +   +L++ V GC+AQ    E+ +R+P +++V+G      + E++E  +
Sbjct: 62  GELKRLK----RNNKNLIIAVTGCMAQKNQAEMFKRAPHIDIVLGTHNIQHINEMIEEVQ 117

Query: 145 FGKR---VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
            G      VD D SV  + E  +  +G +       A++ I  GC+KFCT+C+VP+ RG 
Sbjct: 118 HGHTHQISVDMDNSVLPELE--AKPNGSF------YAWVPIMNGCNKFCTYCIVPHVRGR 169

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT-FSDLLYSLSEIKGL 260
           EISR +  +V E   L   G  EITLLGQNVN++   GLD +  T F  L+ +L  I G+
Sbjct: 170 EISRPVEAIVKEVTDLGVKGFKEITLLGQNVNSY---GLDFKDGTDFGTLIDALDGIPGI 226

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+RY TSHP+DMS  +I A G    ++ +LHLP+QSGS+RILK MNR +T   Y++++ 
Sbjct: 227 ERIRYMTSHPQDMSKSMIDALGRSSNIVTHLHLPIQSGSNRILKKMNRHYTVEHYKELLS 286

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
             R    D+ +++D IVGFPGET++DF+AT+ L+  + Y  A++F YS R GTP + M +
Sbjct: 287 YCREKIKDVVVTTDIIVGFPGETEEDFQATLQLLKDVRYDMAYTFIYSKRSGTPAATMDD 346

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSPWLQSVV 439
           Q+ E +K  RL  L     E     N    GQ+ ++++E    +++    GR+   + V+
Sbjct: 347 QIPEEIKRVRLQTLMDVQNEISYELNKPMEGQVFDIIVEGPSPRDEDMWFGRTSGNKMVL 406

Query: 440 LNSKNH-NIGDIIKVRITDVKISTLYGELV 468
               +  +IG  +   I   +    YG +V
Sbjct: 407 FPKDDSLSIGQTVPAHIDKAQTWVCYGSIV 436


>gi|124023692|ref|YP_001017999.1| (dimethylallyl)adenosine tRNA methylthiotransferase
           [Prochlorococcus marinus str. MIT 9303]
 gi|229890600|sp|A2CB74|MIAB_PROM3 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|123963978|gb|ABM78734.1| 2-methylthioadenine synthetase [Prochlorococcus marinus str. MIT
           9303]
          Length = 480

 Score =  301 bits (770), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 175/451 (38%), Positives = 268/451 (59%), Gaps = 23/451 (5%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           F+++++GCQMN  DS RM  +  + GY    +  +ADL++ NTC IR+ A +KVYS+LGR
Sbjct: 31  FWIQTFGCQMNKADSERMAGILEAMGYHEAPAELEADLVLYNTCTIRDNAEQKVYSYLGR 90

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
               +  R +    L +VVAGCVAQ EGE +LRR P +++V+GPQ   RL  LL +   G
Sbjct: 91  ----QARRKRTHPHLKLVVAGCVAQQEGEALLRRIPELDLVMGPQHANRLEALLTQVDNG 146

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           ++VV TD +     E L+       R   + A++ +  GC++ CT+CVVP  RG E SRS
Sbjct: 147 QQVVATDDN--HILEDLTTA----RRDSTICAWVNVIYGCNERCTYCVVPSVRGKEQSRS 200

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG------EKCTFSDLLYSLSEIKGL 260
              +  E   L   G  EITLLGQN++A+ G+ L G       + T +DLL+ + +++G+
Sbjct: 201 PEAIRLEIEGLAARGFREITLLGQNIDAY-GRDLPGITPEGRRQNTLTDLLHHIHDVEGI 259

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+ TSHPR  ++ LI+A  DL  +  + H+P QSG + +LK+M R +T   YR+I++
Sbjct: 260 ERIRFATSHPRYFTERLIEACFDLPKVCEHFHIPFQSGDNDVLKAMARGYTVERYRRIVN 319

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           RIR + PD AIS+D IV FPGETD  F+ T++LV+++G+ Q  +  YSPR  TP +    
Sbjct: 320 RIRELMPDAAISTDVIVAFPGETDAQFQNTLNLVEEVGFDQVNTAAYSPRPNTPAATWSN 379

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRS-----PW 434
           Q+ E VK ERL  L   +    +  N    G++ +VL E  + K+  +L+GR+      +
Sbjct: 380 QLPEVVKVERLKQLNALVERVALQRNSRYSGKVEQVLAEGINPKKPQQLMGRTRTNRLTF 439

Query: 435 LQSVVLNSKNHNIGDIIKVRITDVKISTLYG 465
             +    S  ++ GD++ V+I  V+  +L G
Sbjct: 440 FAAEGPQSCRYSPGDLVDVQINSVRAFSLSG 470


>gi|89891819|ref|ZP_01203321.1| 2-methylthioadenine synthetase [Flavobacteria bacterium BBFL7]
 gi|89515974|gb|EAS18639.1| 2-methylthioadenine synthetase [Flavobacteria bacterium BBFL7]
          Length = 490

 Score =  301 bits (770), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 177/464 (38%), Positives = 270/464 (58%), Gaps = 31/464 (6%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ +++SYGCQMN  DS  +  +   +G+   N +++ADL+++NTC IR+KA + V    
Sbjct: 24  RKLYIESYGCQMNFSDSEIVASILSKEGFNTTNVLEEADLVLVNTCSIRDKAEQTV---- 79

Query: 85  GRIRNLKNSRIKE--GGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            R R  K +R+KE    ++ V V GC+A+    + L    IV++VVGP  Y  LP L+  
Sbjct: 80  -RKRLEKYNRVKERQNPNMKVGVLGCMAERLKSKFLEEEKIVDMVVGPDAYKDLPNLVAE 138

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
              G+  V+   S E+ +  ++ V    N   GVTAF++I  GCD  CTFCVVP+TRG E
Sbjct: 139 IDEGRDAVNVILSKEETYGDIAPVRLNTN---GVTAFVSITRGCDNMCTFCVVPFTRGRE 195

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNA--WRGKGL--DGEKCT---------FSD 249
            SR    +++E   L   G  E+TLLGQNV++  W G GL  D  K T         F+ 
Sbjct: 196 RSRDPQSILEEIADLTSKGFKEVTLLGQNVDSYLWYGGGLKKDFAKATPMAQATAVDFAQ 255

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
           LL  ++     +R+R+ TS+P+D+SD ++ A  +   +  Y+HLPVQSGSDRILK MNR 
Sbjct: 256 LLNQVATAFPNLRVRFATSNPQDISDDVLHAIANHRNICNYIHLPVQSGSDRILKEMNRL 315

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369
           HT  EY ++IDR+ ++ P+ A+S D I GFP ET++D + T+ L++ + Y   F F YS 
Sbjct: 316 HTREEYMRLIDRVHTIIPECAVSQDMITGFPTETEEDHQDTLSLMEYVKYDYGFMFAYSE 375

Query: 370 RLGTPGSNMLE-QVDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK 425
           R GT  +  +E  V E+VK+ RL   + +Q++   ++  +    +G+ +E LIEK  K+ 
Sbjct: 376 RPGTMAARKMEDDVPEDVKSRRLNEIIAIQRRTGLERAQY---FIGKTVECLIEKESKKS 432

Query: 426 -GKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
             +  GR+      V   +N+ +GD + V+ITD   +TL GE V
Sbjct: 433 DSQWAGRNSQNYVAVFPKENYKVGDFVNVKITDCTSATLIGEAV 476


>gi|134299740|ref|YP_001113236.1| (dimethylallyl)adenosine tRNA methylthiotransferase
           [Desulfotomaculum reducens MI-1]
 gi|229890514|sp|A4J5Q8|MIAB_DESRM RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|134052440|gb|ABO50411.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Desulfotomaculum reducens
           MI-1]
          Length = 456

 Score =  301 bits (770), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 168/445 (37%), Positives = 263/445 (59%), Gaps = 14/445 (3%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           + ++S+GCQMN  D+  +  M    GY   ++ ++AD+I+LNTC +RE A  KV+  LGR
Sbjct: 19  YLIQSFGCQMNERDAESLAGMLEDLGYCPTSAQEEADIILLNTCCVRETAESKVFGLLGR 78

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAE--GEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           +R LK ++     DL++ V GC++Q E   + I R  P V+++ G    + LP ++ + +
Sbjct: 79  LRKLKVAK----PDLILGVCGCMSQQEDAAKRIRRSFPFVDLIFGTHNIHELPRMIHQVQ 134

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
                V   ++ E        V     RK  + A++TI  GC+ FCT+C+VPY RG E S
Sbjct: 135 ENHEAVLEVWATEKGITESIPV----KRKDKLKAWVTIMYGCNNFCTYCIVPYVRGRERS 190

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R    ++DE ++L+  G  E+TLLGQNVN++ GK        F+DLL ++ +I GL R+R
Sbjct: 191 RQPEDIIDEIKELVQEGYKEVTLLGQNVNSY-GKDFKN-NYRFADLLMAIDDITGLERVR 248

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           + TSHPRD    LI+       +  + HLP Q+GS+R+LK MNR +T   Y ++I +I+ 
Sbjct: 249 FMTSHPRDFDQRLIEVVASAKKVCEHYHLPAQAGSNRVLKMMNRGYTREHYLELIRKIKE 308

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             P+ +I++D +VGFPGET++DF+ T+DLV ++ Y  AF+F Y+ R GTP +  LEQV E
Sbjct: 309 RVPNASITADLMVGFPGETEEDFQETLDLVKQVRYDSAFTFVYNIRSGTPAAK-LEQVSE 367

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GRSPWLQSVVLNSK 443
            VK+ER+  L +      +  N    G+++EVL+E   K    L+ GR+   + VV    
Sbjct: 368 EVKSERIQRLIELQNLISLENNQREEGRVLEVLVEGETKTNPDLLAGRTRTNKLVVFQGS 427

Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468
            H  G ++++RIT  + + L GE+V
Sbjct: 428 GHLPGQLVQIRITKGRPNLLEGEVV 452


>gi|218290137|ref|ZP_03494299.1| RNA modification enzyme, MiaB family [Alicyclobacillus
           acidocaldarius LAA1]
 gi|218239846|gb|EED07035.1| RNA modification enzyme, MiaB family [Alicyclobacillus
           acidocaldarius LAA1]
          Length = 497

 Score =  300 bits (769), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 168/448 (37%), Positives = 264/448 (58%), Gaps = 14/448 (3%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P RF +++YGCQMN +D+  M  +  + GYE  +  ++AD I+ NTC +RE A +KV+  
Sbjct: 54  PYRFLIRTYGCQMNEHDTEVMAGLLTAMGYEPTHDAEEADFILFNTCAVRENAEDKVFGE 113

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRS--PIVNVVVGPQTYYRLPELLE 141
           +GR+R LK    ++  +L+  + GC+AQ +G + + R   P +++V G    +RLP LL 
Sbjct: 114 IGRLRPLK----RQNPELIFGLCGCMAQEKGVQRMVREKYPWIDLVFGTHNIHRLPALLS 169

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
            AR  +  V     V D     ++ D    RK  V A++ +Q GC+KFCT+C+VPYTRG+
Sbjct: 170 AARASQETV---MEVWDNAPE-TVEDWPKLRKDRVRAWVNVQYGCNKFCTYCIVPYTRGV 225

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR    V+ E  +L+  G  +ITLLGQNVN +   G+D     F+ LL  ++ I G+ 
Sbjct: 226 ERSRLPEDVLREVVELVQEGYQDITLLGQNVNDY---GVDLGTTNFARLLRQVNSIPGIG 282

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
            +R+TTS+P + +D LI A  + + ++ ++HLPVQSG++ IL+ MNR HT   Y +++D+
Sbjct: 283 WIRFTTSNPWNFTDELIDAIAESENVVEHIHLPVQSGNNEILRRMNRSHTREYYLRLVDK 342

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           IR+  P ++I++D IVGFPGET+  F+ T+ LV ++ +  AF+F YSPR  TP +   + 
Sbjct: 343 IRTRIPGVSITTDLIVGFPGETEAHFQDTLRLVREVEFDNAFTFIYSPRENTPAARWNDD 402

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440
                K ERL+ L +   E     N+   G ++EVL++   K     L GR+   + V+ 
Sbjct: 403 TPLEEKKERLMRLNEVQNEISRRHNEKLRGALVEVLVDGESKTNPDVLSGRTRTNKLVLF 462

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 IG  I+VR+T+ +   L GE+ 
Sbjct: 463 RGDKSLIGQRIRVRVTEPQTFLLKGEIA 490


>gi|314933472|ref|ZP_07840837.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus caprae
           C87]
 gi|313653622|gb|EFS17379.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus caprae
           C87]
          Length = 514

 Score =  300 bits (769), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 170/446 (38%), Positives = 264/446 (59%), Gaps = 15/446 (3%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           F +K+YGCQMN +D+  M  +  + GY     ++ AD+I++NTC IRE A  KV+S +G 
Sbjct: 70  FLIKTYGCQMNAHDTEVMAGILKALGYSATTDINQADVILINTCAIRENAENKVFSEIGN 129

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           +++LK    KE  D L+ V GC++Q E    +IL+    V+++ G    + LPE+LE A 
Sbjct: 130 LKHLK----KERPDCLIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHHLPEILEEAY 185

Query: 145 FGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             K +V   +S E D  E L  V     R+  + A++ I  GCDKFCT+C+VP+TRG E 
Sbjct: 186 LSKAMVVEVWSKEGDVIENLPKV-----REGSIKAWVNIMYGCDKFCTYCIVPFTRGKER 240

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR    +++E R+L   G  EITLLGQNVN++ GK ++       DLL  +S+I  + R+
Sbjct: 241 SRRPEDIINEVRELAREGYQEITLLGQNVNSY-GKDIEDLDYGLGDLLEDISKI-DIPRV 298

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+TTSHP D +D +I+   +   ++P++HLPVQSG++ +LK M R++T   Y  +++RI+
Sbjct: 299 RFTTSHPWDFTDRMIEVIANGGNIVPHIHLPVQSGNNAVLKIMGRKYTRESYLDLVNRIK 358

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           +  P+IA+++D IVG+P ET++ F  T+ L D++ +  A+++ YS R GTP + M + V 
Sbjct: 359 TAIPNIALTTDIIVGYPNETEEQFEETLSLYDEVEFEHAYTYLYSQRDGTPAAKMKDNVP 418

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVLNS 442
             VK ERL  L KK+ E          G+I+ VL E   K+    L G +   + V   +
Sbjct: 419 TEVKKERLQRLNKKVGEYSQKAMSQYEGEIVTVLCEGASKKDDTVLAGYTEKNKLVNFKA 478

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
               IG ++ V+I + K  +L G  V
Sbjct: 479 PKEMIGKLVDVKIDEAKQYSLNGTFV 504


>gi|242242576|ref|ZP_04797021.1| tRNA-i(6)A37 modification enzyme MiaB [Staphylococcus epidermidis
           W23144]
 gi|242234003|gb|EES36315.1| tRNA-i(6)A37 modification enzyme MiaB [Staphylococcus epidermidis
           W23144]
          Length = 514

 Score =  300 bits (769), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 170/446 (38%), Positives = 264/446 (59%), Gaps = 15/446 (3%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           F +K+YGCQMN +D+  M  +  + GY   + +++AD+I++NTC IRE A  KV+S +G 
Sbjct: 70  FLIKTYGCQMNAHDTEVMAGILNALGYSATSDINEADVILINTCAIRENAENKVFSEIGN 129

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           +++LK    KE  D L+ V GC++Q E    +IL+    V++V G    + LPE+LE A 
Sbjct: 130 LKHLK----KERPDCLIGVCGCMSQEESVVNKILKSYQNVDMVFGTHNIHHLPEILEEAY 185

Query: 145 FGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             K +V   +S E D  E L  V  G+     + A++ I  GCDKFCT+C+VP+TRG E 
Sbjct: 186 LSKAMVVEVWSKEGDIIENLPKVRDGH-----IKAWVNIMYGCDKFCTYCIVPFTRGKER 240

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR    ++DE R+L   G  EITLLGQNVN++ GK ++G      DLL  +S+I  + R+
Sbjct: 241 SRRPEDIIDEVRELAREGYQEITLLGQNVNSY-GKDIEGLDYELGDLLEDISKID-IPRV 298

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+TTSHP D +D +I+       ++P++HLPVQSG++++LK M R++T   Y  ++ RI+
Sbjct: 299 RFTTSHPWDFTDRMIEVIAKGGNIVPHIHLPVQSGNNQVLKIMGRKYTRESYLDLVSRIK 358

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              P++A+++D IVG+P ET++ F  T+ L D + +  A+++ YS R GTP + M + V 
Sbjct: 359 EAIPNVALTTDIIVGYPNETEEQFEETLTLYDDVQFEHAYTYLYSQRDGTPAAKMKDNVP 418

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSPWLQSVVLNS 442
             VK ERL  L KK+            G+I+ VL E    K++  L G +   + V    
Sbjct: 419 LEVKKERLQRLNKKVGMYSQQAMSQYEGKIVTVLCEGSSKKDESVLAGYTDKNKLVNFKG 478

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
              +IG ++ V+I + K  +L G  +
Sbjct: 479 PRESIGKLVDVKIDEAKQYSLNGTFI 504


>gi|332519830|ref|ZP_08396294.1| RNA modification enzyme, MiaB family [Lacinutrix algicola 5H-3-7-4]
 gi|332044389|gb|EGI80583.1| RNA modification enzyme, MiaB family [Lacinutrix algicola 5H-3-7-4]
          Length = 479

 Score =  300 bits (769), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 182/463 (39%), Positives = 265/463 (57%), Gaps = 30/463 (6%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F++SYGC MN  DS  +  +   QGY   + ++DADL+++NTC IR+KA + V   L
Sbjct: 24  KKLFIESYGCAMNFSDSEIVASILDEQGYNTTSKLEDADLVLVNTCSIRDKAEQTVRKRL 83

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            +   +K +  K    + V V GC+A+    + L    IV++VVGP  Y  LP LL    
Sbjct: 84  EKYNAVKRTNPK----MKVGVLGCMAERLKSKFLEEEKIVDLVVGPDAYKDLPNLLAEVE 139

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G   ++   S ++ +  +S V    N   GVTAF++I  GCD  CTFCVVP+TRG E S
Sbjct: 140 EGHDAINVVLSKDETYGDVSPVRLNSN---GVTAFVSITRGCDNMCTFCVVPFTRGRERS 196

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNA--WRGKGL--------DGEKCT---FSDLL 251
           R    +++E   L   G  EITLLGQNV++  W G GL        D +K T   FS LL
Sbjct: 197 RDPQSIIEEINDLWSKGYKEITLLGQNVDSYLWYGGGLKKDFSKASDIQKATAVDFSKLL 256

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
              +E +  +R+R++TS+P+DMS  +IK       +  ++HLPVQSGSDRILK+MNR HT
Sbjct: 257 QICAEAQPKMRIRFSTSNPQDMSLEVIKTMAKYKNICNHIHLPVQSGSDRILKAMNRLHT 316

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
             EY  +ID I+++ PD AIS D I GFP ET++D + T+ L++ + Y   + F YS R 
Sbjct: 317 RKEYFTLIDNIKTIIPDCAISQDMIAGFPTETEEDHQDTLSLMEYVKYNFGYMFTYSERP 376

Query: 372 GTPGSNML-EQVDENVKAERLLCLQKKLREQQVSFND----ACVGQIIEVLIEKHGKE-K 425
           GT     L + + E VK+ RL    K++ E Q+  ++      +G+ +EVLIE+  K+ K
Sbjct: 377 GTLAERKLDDDIPEAVKSRRL----KEIIELQLKHSELRTREHLGKTVEVLIERESKKSK 432

Query: 426 GKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            +  GR+      V    N+ IGD + V++TD   +TL GE V
Sbjct: 433 EQWSGRTEKNLVAVFPKGNYKIGDFVNVKVTDCTKATLIGEAV 475


>gi|120403419|ref|YP_953248.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Mycobacterium
           vanbaalenii PYR-1]
 gi|229890571|sp|A1T7U2|MIAB_MYCVP RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|119956237|gb|ABM13242.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Mycobacterium vanbaalenii
           PYR-1]
          Length = 510

 Score =  300 bits (769), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 169/432 (39%), Positives = 253/432 (58%), Gaps = 24/432 (5%)

Query: 13  MVSQIVDQCIVP------QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIV 66
           M S +  Q   P      + F V++YGCQMNV+DS R+  +    GY R     DAD++V
Sbjct: 1   MTSTVTQQASGPSPDRSARTFEVRTYGCQMNVHDSERLAGLLEGAGYRRAGEGADADIVV 60

Query: 67  LNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNV 126
            NTC +RE A  K+Y  L  +   K S      D+ + V GC+AQ + + +LR++P V+V
Sbjct: 61  FNTCAVRENADNKLYGNLSHLAPRKQSDP----DMQIAVGGCLAQKDRDSVLRKAPWVDV 116

Query: 127 VVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGC 186
           V G      LP LL+RAR   RV   + + E   E  S +    +R+    A+++I  GC
Sbjct: 117 VFGTHNIGSLPALLDRARH-NRVAQVEIA-EALQEFPSALPA--SRESSYAAWVSISVGC 172

Query: 187 DKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG---- 242
           +  CTFC+VP  RG E+ R    V+ E + L+D GV EITLLGQNVNA+     D     
Sbjct: 173 NNTCTFCIVPALRGREVDRRPGDVLAEVQSLVDQGVLEITLLGQNVNAYGVSFADPTEPR 232

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
           ++  F+ LL +   I GL R+R+T+ HP + +D +I+A  +   + P LH+P+QSGSDRI
Sbjct: 233 DRGAFAKLLRACGRIDGLERVRFTSPHPAEFTDDVIEAMAETPNVCPTLHMPLQSGSDRI 292

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           L++M R + A  Y  IIDR+R+  P  AI++D IVGFPGET++DF+AT+D+V    ++ A
Sbjct: 293 LRAMRRSYRAERYLGIIDRVRAAIPHAAITTDLIVGFPGETEEDFQATLDVVAASRFSSA 352

Query: 363 FSFKYSPRLGTPGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIE 419
           F+F+YS R GTP + + +QV + V +E   RL+ LQ+++  ++   N A +G+ +E+L+ 
Sbjct: 353 FTFQYSKRPGTPAAELADQVPKAVVSERYQRLIELQERISLEE---NTAQIGRRVELLVA 409

Query: 420 KHGKEKGKLVGR 431
                K     R
Sbjct: 410 TGEGRKDAATAR 421


>gi|71902415|ref|ZP_00684371.1| Protein of unknown function UPF0004:tRNA-i(6)A37 modification
           enzyme MiaB [Xylella fastidiosa Ann-1]
 gi|71727853|gb|EAO30094.1| Protein of unknown function UPF0004:tRNA-i(6)A37 modification
           enzyme MiaB [Xylella fastidiosa Ann-1]
          Length = 375

 Score =  300 bits (768), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 157/375 (41%), Positives = 231/375 (61%), Gaps = 17/375 (4%)

Query: 105 VAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV-VDTDYSVEDKFERL 163
           V GCVA  EG+ I++R+P V++V GPQT +RLP+++   R   R  +D  +   +KF+ L
Sbjct: 3   VGGCVASQEGQTIVKRAPYVDLVFGPQTLHRLPDMIRARREQNRPQIDISFPEIEKFDHL 62

Query: 164 SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVC 223
                   R  G +AF++I EGC K+C+FCVVPYTRG E+SR    V+ E   L   GV 
Sbjct: 63  PTP-----RAEGPSAFVSIMEGCSKYCSFCVVPYTRGEEVSRPFEDVLTEIAHLATQGVR 117

Query: 224 EITLLGQNVNAWRG-------KGLDGEKCTFSDL---LYSLSEIKGLVRLRYTTSHPRDM 273
           EI LLGQNVNA+RG          +     ++DL   + ++++ + + R+R+TTSHP + 
Sbjct: 118 EINLLGQNVNAYRGAMDPGPSNNTNPAAPPYADLGLLIRAIAQFESIGRIRFTTSHPLEF 177

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
           SD L++A+ D+  L  +LHLPVQSGSDRIL +M R +TA E++  I ++R+VRPDI+ISS
Sbjct: 178 SDSLVEAYRDIPQLANHLHLPVQSGSDRILSAMKRGYTALEFKSKIRKLRAVRPDISISS 237

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLC 393
           DFI+GFPGE+D DF+ TM L++ IG+ Q+FSF YS R GTP SN+ +   + +K  RL  
Sbjct: 238 DFIIGFPGESDTDFQKTMQLIEDIGFDQSFSFIYSRRPGTPASNLEDHTPDEIKRTRLEH 297

Query: 394 LQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNSKNHNIGDIIK 452
           LQK +       +   +G +  VL+E   K+   +L G++  ++ V        IG  I 
Sbjct: 298 LQKHINAYAADISKRMIGTVQTVLVEGPSKKNPNELTGKTENMRPVNFPGNPRLIGQFID 357

Query: 453 VRITDVKISTLYGEL 467
           V IT+   ++L G +
Sbjct: 358 VHITEALTNSLRGRV 372


>gi|159903894|ref|YP_001551238.1| 2-methylthioadenine synthetase [Prochlorococcus marinus str. MIT
           9211]
 gi|229890601|sp|A9BBS2|MIAB_PROM4 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|159889070|gb|ABX09284.1| 2-methylthioadenine synthetase [Prochlorococcus marinus str. MIT
           9211]
          Length = 467

 Score =  300 bits (768), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 174/457 (38%), Positives = 270/457 (59%), Gaps = 35/457 (7%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           +++ ++GCQMN  DS RM  +    GY++      ADL++ NTC IR+ A +KVYS+LGR
Sbjct: 24  YWITTFGCQMNKADSERMAGILERMGYKQAEEELQADLVLYNTCTIRDNAEQKVYSYLGR 83

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
               +  R K    L ++VAGCVAQ EGE +LRR P +++V+GPQ   RL  LL +   G
Sbjct: 84  ----QALRKKLFPQLKLIVAGCVAQQEGESLLRRVPELDLVMGPQHANRLETLLNKVETG 139

Query: 147 KRVVDTD--YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
           ++V+ T+  Y +ED    L+       R   + A++ +  GC++ CT+CVVP  RG E S
Sbjct: 140 QQVLATEELYIIED----LTTA----RRDSSICAWVNVIYGCNERCTYCVVPSVRGKEQS 191

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG------EKCTFSDLLYSLSEIK 258
           R+   +  E   L + G  E+TLLGQN++A+ G+ L G      +K T +DLLY + +I+
Sbjct: 192 RTPPAIKREIENLANTGFKEVTLLGQNIDAY-GRDLPGTTPQGRKKNTLTDLLYYIHDIE 250

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           G+ R+R+ TSHPR  +  LI+A  +L  +  + H+P QSG D IL  M R +    Y++I
Sbjct: 251 GIERIRFATSHPRYFTSRLIEACAELPKVCEHFHIPFQSGDDEILNQMRRGYKIKTYKKI 310

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           I RIR + P+ +I++D IV FPGET++ F+ ++ LV++IG+ Q  +  YSPR  TP +  
Sbjct: 311 IGRIRELMPNASITADVIVAFPGETNEQFQRSLSLVEEIGFDQLNTAAYSPRPNTPAALW 370

Query: 379 LEQVDENVKAERLLCLQK----KLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRS- 432
             Q+ E +K ERL  L      K +E+ V + D    ++ EVL E  + K+K +L+GR+ 
Sbjct: 371 PNQIPEEIKIERLRKLNSLVEIKAKERNVRYKD----RVEEVLAENTNPKDKQQLMGRTR 426

Query: 433 ----PWLQSVVLNSKNHNIGDIIKVRITDVKISTLYG 465
                +   V     ++  GD++KVR+ D++  +L G
Sbjct: 427 TNRLTFFPKVDNQGNSYKPGDLVKVRVKDIRAFSLSG 463


>gi|223044509|ref|ZP_03614536.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus capitis
           SK14]
 gi|222442106|gb|EEE48224.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus capitis
           SK14]
          Length = 514

 Score =  300 bits (768), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 170/446 (38%), Positives = 264/446 (59%), Gaps = 15/446 (3%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           F +K+YGCQMN +D+  M  +  + GY     ++ AD+I++NTC IRE A  KV+S +G 
Sbjct: 70  FLIKTYGCQMNAHDTEVMAGILKALGYSATTDINQADVILINTCAIRENAENKVFSEIGN 129

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           +++LK    KE  D L+ V GC++Q E    +IL+    V+++ G    + LPE+LE A 
Sbjct: 130 LKHLK----KERPDCLIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHHLPEILEEAY 185

Query: 145 FGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             K +V   +S E D  E L  V     R+  + A++ I  GCDKFCT+C+VP+TRG E 
Sbjct: 186 LSKAMVVEVWSKEGDVIENLPKV-----REGSIKAWVNIMYGCDKFCTYCIVPFTRGKER 240

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR    +++E R+L   G  EITLLGQNVN++ GK ++       DLL  +S+I  + R+
Sbjct: 241 SRRPEDIINEVRELAREGYQEITLLGQNVNSY-GKDIEDLDYGLGDLLEDISKI-DIPRV 298

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+TTSHP D +D +I+   +   ++P++HLPVQSG++ +LK M R++T   Y  +++RI+
Sbjct: 299 RFTTSHPWDFTDRMIEVIANGGNIVPHIHLPVQSGNNAVLKIMGRKYTRESYLDLVNRIK 358

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           +  P+IA+++D IVG+P ET++ F  T+ L D++ +  A+++ YS R GTP + M + V 
Sbjct: 359 TAIPNIALTTDIIVGYPNETEEQFEETLSLYDEVEFEHAYTYLYSQRDGTPAAKMKDNVP 418

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVLNS 442
             VK ERL  L KK+ E          G+I+ VL E   K+    L G +   + V   +
Sbjct: 419 TEVKKERLQRLNKKVGEYSQKAMSKYEGKIVTVLCEGASKKDDTVLAGYTDKNKLVNFKA 478

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
               IG ++ V+I + K  +L G  V
Sbjct: 479 PKEMIGKLVDVKIDEAKQYSLNGTFV 504


>gi|86131573|ref|ZP_01050171.1| tRNA-i(6)A37 modification enzyme MiaB [Dokdonia donghaensis MED134]
 gi|85818018|gb|EAQ39186.1| tRNA-i(6)A37 modification enzyme MiaB [Dokdonia donghaensis MED134]
          Length = 484

 Score =  300 bits (768), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 178/463 (38%), Positives = 270/463 (58%), Gaps = 29/463 (6%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F++SYGCQMN  DS  +  +  ++GY    ++++ADL+++NTC IREKA   V   L
Sbjct: 24  KKLFIESYGCQMNFADSEVVASILANEGYNTTQNLEEADLVLVNTCSIREKAEVTVRKRL 83

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            + + +K    K+   + V V GC+A+    + L    IV++VVGP  Y  +P LL    
Sbjct: 84  EKYQAVKR---KQNPTMKVGVLGCMAERLKSKFLEEEKIVDLVVGPDAYKDIPNLLSEVE 140

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G+  V+   S E+ +  +S V    N   GVTAF++I  GCD  CTFCVVP+TRG E S
Sbjct: 141 EGRDAVNVILSKEETYGDISPVRLQTN---GVTAFVSITRGCDNMCTFCVVPFTRGRERS 197

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNA--WRGKGL--DGEKCT---------FSDLL 251
           R    +++E + L + G  EITLLGQNV++  W G GL  D +K +         F+ L+
Sbjct: 198 RDPQSILEEVQDLANRGFKEITLLGQNVDSYLWYGGGLKKDFDKASEMAKATAVNFAQLM 257

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
             +++ +  +R+R++TS+P+DM+  +I+       +  Y+HLPVQSGSDRILK MNR+HT
Sbjct: 258 DMVAKAQPKMRIRFSTSNPQDMTLDVIEVMASHKNICNYIHLPVQSGSDRILKLMNRQHT 317

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
             EY+ +ID I+++ PDI IS D I GFP ET++D + T+DL+D + Y   F F YS R 
Sbjct: 318 VAEYKTLIDNIKNLIPDIGISQDMITGFPTETEEDHQGTLDLIDYVKYDYGFMFYYSERP 377

Query: 372 GTPGSNMLE-QVDENVKAERL---LCLQKKL-REQQVSFNDACVGQIIEVLIEKHGKE-K 425
           GT     +E  +   +K  RL   + LQ+++ R+  + + D    Q IEVLIEK  K+ K
Sbjct: 378 GTLAERKMEDDIPLEIKKRRLQDVIDLQREISRKNLLRYQD----QTIEVLIEKESKKNK 433

Query: 426 GKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            +  GR+      V    ++ +GD + V++ +    TL GE V
Sbjct: 434 DEWSGRNDQNVVAVFPKGDYKVGDFVNVKVNECTTGTLIGEAV 476


>gi|118465431|ref|YP_882802.1| hypothetical protein MAV_3625 [Mycobacterium avium 104]
 gi|118166718|gb|ABK67615.1| conserved hypothetical protein [Mycobacterium avium 104]
          Length = 688

 Score =  300 bits (768), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 165/414 (39%), Positives = 244/414 (58%), Gaps = 21/414 (5%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERV-NSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + V++YGCQMNV+DS R+  +  + GY R     + AD++V NTC +RE A  K+Y  L 
Sbjct: 4   YQVRTYGCQMNVHDSERLAGLLEAAGYRRAAEGAEVADVVVFNTCAVRENADNKLYGNLS 63

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +   K S  +    + + V GC+AQ + E +LRR+P V+VV G      LP LLERAR 
Sbjct: 64  HLAPRKRSNPQ----MQIAVGGCLAQKDREAVLRRAPWVDVVFGTHNIGSLPTLLERARH 119

Query: 146 GKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            K   V+   +++     L        R+    A+++I  GC+  CTFC+VP  RG E+ 
Sbjct: 120 NKAAQVEIAEALQQFPSSLPSA-----RESAYAAWVSISVGCNNSCTFCIVPSLRGKEVD 174

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAW----RGKGLDGEKCTFSDLLYSLSEIKGL 260
           RS   ++ E R L+ +GV E+TLLGQNVNA+        L  ++  F+ LL +  EI GL
Sbjct: 175 RSPDDILAEVRSLVADGVLEVTLLGQNVNAYGVSFADPALPRDRGAFARLLRACGEIDGL 234

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+T+ HP + +D +I+A      + P LH+P+QSGSDR+L++M R + A  Y  IID
Sbjct: 235 ERVRFTSPHPAEFTDDVIEAMAQTPNVCPALHMPLQSGSDRVLRAMRRSYRAERYLGIID 294

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           R+R+  P  AI++D IVGFPGET++DF AT+D+V +  +A AF+F+YS R GTP + +  
Sbjct: 295 RVRAAMPHAAITTDLIVGFPGETEEDFAATLDVVRRARFAAAFTFQYSKRPGTPAAELDG 354

Query: 381 QVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR 431
           Q+ + V   + ERL+ LQ+ +  Q    N A VGQ +E+L+      K     R
Sbjct: 355 QIPKAVVQERYERLVELQESISLQG---NQALVGQTVELLVATGEGRKDSATAR 405


>gi|313114011|ref|ZP_07799566.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Faecalibacterium cf.
           prausnitzii KLE1255]
 gi|310623713|gb|EFQ07113.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Faecalibacterium cf.
           prausnitzii KLE1255]
          Length = 459

 Score =  300 bits (768), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 185/463 (39%), Positives = 260/463 (56%), Gaps = 19/463 (4%)

Query: 10  VAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNT 69
            A +V Q  D    P   FV SYGCQ NV D  R++ +    GY   +  +DADLI+ NT
Sbjct: 12  AAELVKQAYD---TPPLAFVHSYGCQQNVNDGERIKGVLMDIGYGLCDKPEDADLILFNT 68

Query: 70  CHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVA-QAEGEEILRRS-PIVNVV 127
           C +RE A ++V+  +G ++ LK  +     DL++ + GC+A Q    E LR+S P V++V
Sbjct: 69  CAVREHAEQRVFGNVGALKGLKEKK----HDLIIGLCGCMANQKHVVEKLRQSYPYVDLV 124

Query: 128 VGPQTYYRLPELL-ERARFGKRVVDTDYSVEDKFERLSIVDG-GYNRKRGVTAFLTIQEG 185
            G      LP+L+ ++ +  KRV+       +  +R  IV+     R+    A+L I  G
Sbjct: 125 FGVDGIDTLPQLIAQKLQKHKRVL------MEPAQRPVIVENIPIRRESEFRAWLPIMYG 178

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           CD FCT+C+VPY RG E SR    ++ E R L++ G  EITLLGQNVN++ GKGL+ EK 
Sbjct: 179 CDNFCTYCIVPYVRGREKSRKPGDILAEFRGLVEAGYKEITLLGQNVNSY-GKGLE-EKV 236

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
            FSDLL  L  + G   +R+ TSHP+D S  LI        L  +LHLPVQ GSD +LK 
Sbjct: 237 DFSDLLNLLCTVPGDYHIRFMTSHPKDASHKLIDTIAAQPKLCKHLHLPVQCGSDELLKK 296

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           MNR +T  +Y ++I+  R   P I  SSD IVGFPGET+ DF  T++LV K+GY Q F+F
Sbjct: 297 MNRHYTVEQYMELIEYARKTVPGITFSSDIIVGFPGETEADFVKTLELVQKVGYMQLFTF 356

Query: 366 KYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK 425
            YS R GT  + M +      K +R+  L K   E  ++   A VGQ ++VL+E  G+ +
Sbjct: 357 IYSKRTGTKAAEMPDPTPRKEKTDRMTRLLKVQDEIAMALVKAQVGQTVKVLVEGFGRNE 416

Query: 426 GKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           G L GR     +V   +    +G    V +T  + + L GEL 
Sbjct: 417 GTLSGRLDNNLTVEFTADASLMGSYANVHLTGARATVLLGELA 459


>gi|300933041|ref|ZP_07148297.1| (dimethylallyl)adenosine tRNA methylthiotransferase
           [Corynebacterium resistens DSM 45100]
          Length = 507

 Score =  300 bits (768), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 161/455 (35%), Positives = 270/455 (59%), Gaps = 23/455 (5%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           + V+++GCQMNV+DS R+  +    GY  V      D++V NTC +RE A  ++Y  LG+
Sbjct: 8   YEVRTFGCQMNVHDSERLSGLLEDNGYIPVGEGQTPDVVVFNTCAVRENADNRLYGTLGQ 67

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           ++ +K+S       + + V GC+AQ + + +++++P V+VV G      LP LL R+   
Sbjct: 68  MKAVKDSHP----GMQIAVGGCMAQKDKQTVVKKAPWVDVVFGTHNLGSLPTLLARSAHN 123

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           +R    +  + D  E    V     R+     ++++  GC+  CTFC+VP  RG E  R 
Sbjct: 124 ERA---EVEIVDSLEEFPSVLPA-KRESAYAGWVSVSVGCNNTCTFCIVPSLRGKEQDRR 179

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAW----RGKGLDGEKCTFSDLLYSLSEIKGLVR 262
             +++ E + L+D GV E+TLLGQNVNA+        L+ ++  F+ LL +  EI+GL R
Sbjct: 180 PGEILAEVKALVDQGVSEVTLLGQNVNAYGVNFSDPELERDRGAFAKLLRACGEIEGLER 239

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LR+T+ HP + +D +I+A  +  V+ P LH+P+QSGSD++LK M R + + ++  I++++
Sbjct: 240 LRFTSPHPAEFTDDVIEAMAETPVVCPQLHMPLQSGSDKVLKDMRRSYRSKKFLAILEKV 299

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R   P  AI++D IVGFPGET++DF+ATMD+V+K  +A A++F+YSPR GTP + M  Q+
Sbjct: 300 RERIPHAAITTDIIVGFPGETEEDFQATMDVVEKSRFASAYTFQYSPRPGTPAAEMDNQI 359

Query: 383 DENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK---EKGKLVGRSPWLQ 436
            + V   + ERLL LQ+++  ++   N+  +G   E+L++  G+   E  ++ GR+   +
Sbjct: 360 PKAVVQDRYERLLELQERISREE---NEKLIGTRQELLVQADGRKNDETKRMSGRARDGR 416

Query: 437 SVVLNSKNHNI--GDIIKVRITDVKISTLYGELVV 469
            +  +     I  GDI++V +T      L+ +  V
Sbjct: 417 LIHFDPTVEGIRAGDIVEVEVTGAAGHFLFADAGV 451


>gi|269797930|ref|YP_003311830.1| RNA modification enzyme, MiaB family [Veillonella parvula DSM 2008]
 gi|269094559|gb|ACZ24550.1| RNA modification enzyme, MiaB family [Veillonella parvula DSM 2008]
          Length = 437

 Score =  300 bits (768), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 165/450 (36%), Positives = 259/450 (57%), Gaps = 21/450 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + +++ +YGCQMN  DS R+     S GY    +++ ADLI+LNTC +RE A  KVY  +
Sbjct: 2   KSYYIYTYGCQMNTADSERLSHQLESVGYIPTENVETADLILLNTCAVRENAETKVYGRI 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           G ++ LK    +   +L++ V GC+AQ    E+ +R+P +++V+G      + E++E  +
Sbjct: 62  GELKRLK----RNNKNLIIAVTGCMAQKNQAEMFKRAPHIDIVLGTHNIQHINEMIEEVQ 117

Query: 145 FGKR---VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
            G      VD D +V  + E  +  +G +       A++ I  GC+KFCT+C+VP+ RG 
Sbjct: 118 HGHTHQISVDMDNTVLPELE--AKPNGSF------YAWVPIMNGCNKFCTYCIVPHVRGR 169

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT-FSDLLYSLSEIKGL 260
           EISR +  +V E   L   G  EITLLGQNVN++   GLD +  T F  L+ +L  I G+
Sbjct: 170 EISRPVEAIVKEVTDLGVKGFKEITLLGQNVNSY---GLDFKDGTDFGTLVDALDGIPGI 226

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+RY TSHP+DMS  +I A G    ++ +LHLP+QSGS+RILK MNR +T   Y++++ 
Sbjct: 227 ERIRYMTSHPQDMSKSMIDALGRSSNIVTHLHLPIQSGSNRILKKMNRHYTVEHYKELLS 286

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
             R    D+ +++D IVGFPGET+DDF+AT+ L+  + Y  A++F YS R GTP + M +
Sbjct: 287 YCREKIKDVVVTTDIIVGFPGETEDDFQATLQLLKDVRYDMAYTFIYSKRSGTPAATMDD 346

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSPWLQSVV 439
           Q+ E +K  RL  L     E     N    GQ+ ++++E    +++    GR+   + V+
Sbjct: 347 QIPEEIKRVRLQTLMDVQNEISYELNKPMEGQVFDIIVEGPSPRDEDMWFGRTSGNKMVL 406

Query: 440 LNSKNH-NIGDIIKVRITDVKISTLYGELV 468
               +  +IG  +   I   +    YG ++
Sbjct: 407 FPKDDSLSIGQTVPAHIDKAQTWVCYGSIL 436


>gi|295099816|emb|CBK88905.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Eubacterium cylindroides
           T2-87]
          Length = 477

 Score =  300 bits (768), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 175/464 (37%), Positives = 273/464 (58%), Gaps = 25/464 (5%)

Query: 18  VDQCIVPQ---------RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLN 68
           +D  I+P+         ++++ +YGCQ N  DS  +  +  S G+E+  S +D D+I++N
Sbjct: 26  IDSFIIPENAKFIGNGKKYYISTYGCQANERDSETLAGILDSLGFEKSESPEDVDVILIN 85

Query: 69  TCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNV 126
           TC IR+ A EKV   LG I N K    +   DL++ V GC+AQ EG    +L + P V +
Sbjct: 86  TCAIRQNAEEKV---LGEIGNFK-RLYRANKDLVIGVCGCMAQEEGLVNTLLEKYPQVRL 141

Query: 127 VVGPQTYYRLPELLERARFGKRVVDTDYSVEDK-FERLSIVDGGYNRKRGVTAFLTIQEG 185
           + G    ++LPE+L    F K+ V   YS E + +E L +   G ++     A++ I  G
Sbjct: 142 LFGTHNIHQLPEMLYSVMFEKKRVVKIYSKEGEVYENLPVHRFGKHK-----AWVNIMYG 196

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           CDKFCT+C+VPYTRG + SR++ Q++ E ++L D G  EITLLGQNVNA+ GK +D    
Sbjct: 197 CDKFCTYCIVPYTRGKQRSRTMDQILFEVKELYDQGYKEITLLGQNVNAY-GKDID-PNM 254

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
            F+ LL  +++I G+ R+R+TTSHP D SD +I      D +MP++HLP+QSG D ILK 
Sbjct: 255 NFACLLEEVAKI-GIPRIRFTTSHPWDFSDDMIDVIAKYDNIMPFVHLPLQSGDDEILKR 313

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           M RR+T+  Y ++ ++I +    +A+S+D IVGFP E+D+ F  T+++++K  +  AF+F
Sbjct: 314 MGRRYTSESYMELFNKIVTKIDRVAVSTDVIVGFPNESDEQFEHTLEIMEKCKFDNAFTF 373

Query: 366 KYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK 425
            +SPR GTP + M + +D   K ERL  L     +  +  N A  G++++VL++   K+ 
Sbjct: 374 IFSPRPGTPAARMEDPIDFETKKERLARLNTLWNKYALEKNKAYEGKVVKVLVDGFSKKD 433

Query: 426 GKLV-GRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
             +  G +   + V    +N   GD + V I   K  +L G +V
Sbjct: 434 DHVYSGYTDTNKLVNFTGENIQPGDFVDVLIETGKTFSLDGRVV 477


>gi|27467889|ref|NP_764526.1| hypothetical protein SE0971 [Staphylococcus epidermidis ATCC 12228]
 gi|57866805|ref|YP_188442.1| tRNA-i(6)A37 modification enzyme MiaB [Staphylococcus epidermidis
           RP62A]
 gi|251810724|ref|ZP_04825197.1| 2-methylthioadenine synthetase [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|282876275|ref|ZP_06285142.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus
           epidermidis SK135]
 gi|293366743|ref|ZP_06613419.1| tRNA-I(6)A37 modification enzyme MiaB [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|81674874|sp|Q5HPP8|MIAB_STAEQ RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|81843816|sp|Q8CSS3|MIAB_STAES RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|27315434|gb|AAO04568.1|AE016747_65 conserved hypothetical protein [Staphylococcus epidermidis ATCC
           12228]
 gi|57637463|gb|AAW54251.1| tRNA-i(6)A37 modification enzyme MiaB [Staphylococcus epidermidis
           RP62A]
 gi|251805884|gb|EES58541.1| 2-methylthioadenine synthetase [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|281295300|gb|EFA87827.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus
           epidermidis SK135]
 gi|291319044|gb|EFE59414.1| tRNA-I(6)A37 modification enzyme MiaB [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|329728030|gb|EGG64474.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
           epidermidis VCU144]
 gi|329736630|gb|EGG72896.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
           epidermidis VCU045]
          Length = 514

 Score =  300 bits (768), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 170/446 (38%), Positives = 264/446 (59%), Gaps = 15/446 (3%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           F +K+YGCQMN +D+  M  +  + GY   + +++AD+I++NTC IRE A  KV+S +G 
Sbjct: 70  FLIKTYGCQMNAHDTEVMAGILNALGYSATSDINEADVILINTCAIRENAENKVFSEIGN 129

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           +++LK    KE  D L+ V GC++Q E    +IL+    V++V G    + LPE+LE A 
Sbjct: 130 LKHLK----KERPDCLIGVCGCMSQEESVVNKILKSYQNVDMVFGTHNIHHLPEILEEAY 185

Query: 145 FGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             K +V   +S E D  E L  V  G+     + A++ I  GCDKFCT+C+VP+TRG E 
Sbjct: 186 LSKAMVVEVWSKEGDIIENLPKVRDGH-----IKAWVNIMYGCDKFCTYCIVPFTRGKER 240

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR    ++DE R+L   G  EITLLGQNVN++ GK ++G      DLL  +S+I  + R+
Sbjct: 241 SRRPEDIIDEVRELAREGYQEITLLGQNVNSY-GKDIEGLDYELGDLLEDISKID-IPRV 298

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+TTSHP D +D +I+       ++P++HLPVQSG++++LK M R++T   Y  ++ RI+
Sbjct: 299 RFTTSHPWDFTDRMIEVIAKGGNIVPHIHLPVQSGNNQVLKIMGRKYTRESYLDLVSRIK 358

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              P++A+++D IVG+P ET++ F  T+ L D + +  A+++ YS R GTP + M + V 
Sbjct: 359 EAIPNVALTTDIIVGYPNETEEQFEETLSLYDDVQFEHAYTYLYSQRDGTPAAKMKDNVP 418

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSPWLQSVVLNS 442
             VK ERL  L KK+            G+I+ VL E    K++  L G +   + V    
Sbjct: 419 LEVKKERLQRLNKKVGIYSQQAMSQYEGKIVTVLCEGSSKKDENVLAGYTDKNKLVNFKG 478

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
              +IG ++ V+I + K  +L G  +
Sbjct: 479 PRESIGKLVDVKIDEAKQYSLNGTFI 504


>gi|229890676|sp|A0QIR4|MIAB_MYCA1 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
          Length = 715

 Score =  300 bits (767), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 165/414 (39%), Positives = 244/414 (58%), Gaps = 21/414 (5%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERV-NSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + V++YGCQMNV+DS R+  +  + GY R     + AD++V NTC +RE A  K+Y  L 
Sbjct: 31  YQVRTYGCQMNVHDSERLAGLLEAAGYRRAAEGAEVADVVVFNTCAVRENADNKLYGNLS 90

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +   K S  +    + + V GC+AQ + E +LRR+P V+VV G      LP LLERAR 
Sbjct: 91  HLAPRKRSNPQ----MQIAVGGCLAQKDREAVLRRAPWVDVVFGTHNIGSLPTLLERARH 146

Query: 146 GKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            K   V+   +++     L        R+    A+++I  GC+  CTFC+VP  RG E+ 
Sbjct: 147 NKAAQVEIAEALQQFPSSLPSA-----RESAYAAWVSISVGCNNSCTFCIVPSLRGKEVD 201

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAW----RGKGLDGEKCTFSDLLYSLSEIKGL 260
           RS   ++ E R L+ +GV E+TLLGQNVNA+        L  ++  F+ LL +  EI GL
Sbjct: 202 RSPDDILAEVRSLVADGVLEVTLLGQNVNAYGVSFADPALPRDRGAFARLLRACGEIDGL 261

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+T+ HP + +D +I+A      + P LH+P+QSGSDR+L++M R + A  Y  IID
Sbjct: 262 ERVRFTSPHPAEFTDDVIEAMAQTPNVCPALHMPLQSGSDRVLRAMRRSYRAERYLGIID 321

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           R+R+  P  AI++D IVGFPGET++DF AT+D+V +  +A AF+F+YS R GTP + +  
Sbjct: 322 RVRAAMPHAAITTDLIVGFPGETEEDFAATLDVVRRARFAAAFTFQYSKRPGTPAAELDG 381

Query: 381 QVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR 431
           Q+ + V   + ERL+ LQ+ +  Q    N A VGQ +E+L+      K     R
Sbjct: 382 QIPKAVVQERYERLVELQESISLQG---NQALVGQTVELLVATGEGRKDSATAR 432


>gi|89894341|ref|YP_517828.1| hypothetical protein DSY1595 [Desulfitobacterium hafniense Y51]
 gi|123091791|sp|Q24X58|MIAB_DESHY RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|89333789|dbj|BAE83384.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 447

 Score =  300 bits (767), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 162/447 (36%), Positives = 260/447 (58%), Gaps = 14/447 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           VP++    +YGCQM+  D+  + ++   +GY R   ++ ADLI++NTC +RE A  K+  
Sbjct: 6   VPKKVVTLAYGCQMSERDADTLTEISSQKGYVRSQELEQADLIIVNTCCVRESAENKILG 65

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELL 140
            +G +++LK +       L + ++GC+ Q  G  E + +R+P V++  G    +    LL
Sbjct: 66  KIGELKHLKEA----NPQLKIAISGCMVQQPGALERLRKRAPHVDIWAGTHNIHEFQRLL 121

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           E A    +V +      +  E + +   G      + A++ I  GC+ FCT+C+VP+ RG
Sbjct: 122 EEAEEKGKVAEVWEKPRETQESVLLAAKG-----KLKAYVNISYGCNNFCTYCIVPHVRG 176

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E SR   +++ E R L++ G  E+TLLGQNVN++ G+ LD     F+DLL  +  I GL
Sbjct: 177 RERSRQPEEILAEIRALVETGCREVTLLGQNVNSY-GQDLD-RAYDFADLLKDVDSIDGL 234

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+ TSHP+D+SD LI+       L  ++HLP Q+GSD ILK MNR++T   Y   I 
Sbjct: 235 WRVRFMTSHPKDLSDKLIETIAAGTHLCEHIHLPFQAGSDEILKGMNRKYTREYYLSRIA 294

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           +I+ + P +++++D IVGFPGET++DF  T++L+ ++ Y+QAF+F YS R GTP + M E
Sbjct: 295 QIKVIIPQVSLTTDIIVGFPGETEEDFEQTLELIRQVRYSQAFTFMYSKRSGTPAAQMAE 354

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439
           Q+  ++K  RL  L      Q +++    +G+  EVL+E   K    +L GR+   + VV
Sbjct: 355 QIPLDIKKRRLQQLITVQNAQSLAWRQEMIGKTCEVLVEGPSKSNPDRLTGRTRGYELVV 414

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGE 466
              +   IG +++V I D    TL+GE
Sbjct: 415 FPGEAQLIGTLVQVLIQDANSWTLFGE 441


>gi|153807123|ref|ZP_01959791.1| hypothetical protein BACCAC_01400 [Bacteroides caccae ATCC 43185]
 gi|149130243|gb|EDM21453.1| hypothetical protein BACCAC_01400 [Bacteroides caccae ATCC 43185]
          Length = 455

 Score =  300 bits (767), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 166/451 (36%), Positives = 267/451 (59%), Gaps = 20/451 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F+++YGCQMNV DS  +  +    GY    ++++AD + +NTC IR+ A +K+ + L
Sbjct: 18  KKLFIETYGCQMNVADSEVIASVMQMAGYSVAETLEEADAVFMNTCSIRDNAEQKILNRL 77

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
               +LK  + +    L+V V GC+A+   ++++     V++VVGP  Y  LP+L+    
Sbjct: 78  EFFHSLKKKKKR----LIVGVLGCMAERVKDDLITNHH-VDLVVGPDAYLTLPDLIAAVE 132

Query: 145 FGKRVVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            G++ ++ + S  + +  +  S + G +     ++ F++I  GC+ FCT+C+VPYTRG E
Sbjct: 133 AGEKAINVELSTTETYRDVIPSRICGNH-----ISGFVSIMRGCNNFCTYCIVPYTRGRE 187

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR +  +++E   L+  G  E+TLLGQNVN++R +   GE  TF  LL +++E    VR
Sbjct: 188 RSRDVESILNEVSDLVAKGYKEVTLLGQNVNSYRFEKPTGEIVTFPMLLRTVAEAAPGVR 247

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP+DMSD  ++    +  +  ++HLPVQSGS RILK MNR++T   Y   +  I
Sbjct: 248 IRFTTSHPKDMSDETLEVIAQVPNVCKHIHLPVQSGSSRILKLMNRKYTREWYLDRVAAI 307

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE-Q 381
           + + PD  +++D   GF  ET++D   ++ L+++ GY  AF FKYS R GT  S  LE  
Sbjct: 308 KRIIPDCGLTTDIFSGFHSETEEDHALSLSLMEECGYDAAFMFKYSERPGTYASKHLEDN 367

Query: 382 VDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQS 437
           V E+VK  RL   + LQ +L  +    N  C+G+  EVL+E   K  + +L GR+   + 
Sbjct: 368 VPEDVKVRRLNEIIALQNRLSAES---NQRCIGKTYEVLVEGVSKRSRDQLFGRTEQNRV 424

Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           VV +   H +GD + VR+T+   +TL GE V
Sbjct: 425 VVFDRGTHRVGDFVNVRVTEASSATLKGEEV 455


>gi|284032611|ref|YP_003382542.1| RNA modification enzyme, MiaB family [Kribbella flavida DSM 17836]
 gi|283811904|gb|ADB33743.1| RNA modification enzyme, MiaB family [Kribbella flavida DSM 17836]
          Length = 497

 Score =  300 bits (767), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 173/416 (41%), Positives = 252/416 (60%), Gaps = 26/416 (6%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           + V++YGCQMNV+DS R+  +    GY R    D AD++V NTC +RE A  K+Y  LG 
Sbjct: 8   YEVRTYGCQMNVHDSERLRGLLEDAGYVRAPEGDQADVVVFNTCAVRENADNKLYGNLGH 67

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           +  +K    K+ G L + V GC+AQ +   I +++P V+VV G      LP LLERAR  
Sbjct: 68  LAPVK---AKKPG-LQIAVGGCLAQKDKATITQKAPWVDVVFGTHNIGALPVLLERAR-- 121

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKR--GVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
              ++ +  VE   E L +       +R    +A++++  GC+  CTFC+VP  RG E  
Sbjct: 122 ---IEQESQVE-ILESLDVFPSTLPARRESAYSAWVSVSVGCNNTCTFCIVPALRGREKD 177

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRL 263
           R    V+ E + L+  GV E+TLLGQNVN++   G++ G++  FS LL +  EI GL R+
Sbjct: 178 RRPGDVLAEVQALVAEGVLEVTLLGQNVNSY---GVEFGDRYAFSKLLRACGEIDGLERV 234

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+T+ HPRD +  +I+A  +   +MP LH+P+QSGSDRILK+M R +    Y +II  +R
Sbjct: 235 RFTSPHPRDFTADVIEAMAETPNVMPSLHMPLQSGSDRILKTMRRSYRRDRYLKIISDVR 294

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           +  PD AI++D IVGFPGET+ DF+ T+D+V +  +A AF+F+YS R GTP  +M +QV 
Sbjct: 295 AAMPDAAITTDIIVGFPGETEQDFQGTLDVVRQARFAGAFTFQYSKRPGTPAESMEDQVP 354

Query: 384 ENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKG---KLVGRS 432
             V   + ERL+ LQ    E   S N A VG+ +EVL+ E  G++     +L GR+
Sbjct: 355 REVVQERYERLVALQD---EMAWSENKAIVGRSLEVLVAEGEGRKDAATHRLSGRA 407


>gi|259507456|ref|ZP_05750356.1| tRNA-I(6)A37 thiotransferase [Corynebacterium efficiens YS-314]
 gi|259164944|gb|EEW49498.1| tRNA-I(6)A37 thiotransferase [Corynebacterium efficiens YS-314]
          Length = 533

 Score =  300 bits (767), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 159/449 (35%), Positives = 257/449 (57%), Gaps = 27/449 (6%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           + V+++GCQMNV+DS R+  +    GY      D  DLIV NTC +RE A +++Y  LG 
Sbjct: 38  YEVRTFGCQMNVHDSERLSGLLEEAGYTAAGEGDTPDLIVFNTCAVRENADQRLYGTLGN 97

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           +R +K +       + + V GC+AQ + + +++++P V+VV G      LP LL RA   
Sbjct: 98  LRAVKENHPG----MQIAVGGCLAQKDKDTVVKKAPWVDVVFGTHNIASLPTLLNRAEHN 153

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           ++    +  + D  E+   V     R+     ++++  GC+  CTFC+VP  RG E  R 
Sbjct: 154 QKA---EVEIVDSLEQFPSVLPA-KRESAYAGWVSVSVGCNNTCTFCIVPSLRGKEQDRR 209

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE----KCTFSDLLYSLSEIKGLVR 262
              ++ E + L+D GV E+TLLGQNVNA+    +D E    +  FS LL +  +I+GL R
Sbjct: 210 PGDILAEVQALVDQGVSEVTLLGQNVNAYGVNFVDPELERDRSAFSKLLRACGDIEGLER 269

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+T+ HP + +  +I A  +   + P LH+P+QSGSDR+LK M R + + ++  I+D +
Sbjct: 270 VRFTSPHPAEFTSDVIDAMAETPNICPQLHMPLQSGSDRVLKEMRRSYRSAKFLAILDEV 329

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+  P  +I++D IVGFPGET++DF+AT+D+V+K  +  A++F+YSPR GTP ++   QV
Sbjct: 330 RAKIPHASITTDIIVGFPGETEEDFQATLDVVEKARFTSAYTFQYSPRPGTPAADYENQV 389

Query: 383 DENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV---------G 430
            + V   + ERL+ LQ+++ E++   N   +GQ +E+L++  G  K             G
Sbjct: 390 PKKVVQERYERLMALQERICEEE---NQKFIGQTVELLVQAGGGRKNDATKRMSGRARDG 446

Query: 431 RSPWLQSVVLNSKNHNIGDIIKVRITDVK 459
           R      V         GD++ V +T+ K
Sbjct: 447 RLVHFTPVGTIDGEIRPGDVVTVEVTEAK 475


>gi|126652507|ref|ZP_01724672.1| YmcB [Bacillus sp. B14905]
 gi|126590635|gb|EAZ84751.1| YmcB [Bacillus sp. B14905]
          Length = 514

 Score =  300 bits (767), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 168/446 (37%), Positives = 264/446 (59%), Gaps = 15/446 (3%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           F++++YGCQMN +D+  M  +F   GY     +++AD+++LNTC IRE A  KV+  LG 
Sbjct: 70  FYIRTYGCQMNEHDTEVMAGIFMQLGYTPTEIIEEADVVLLNTCAIRENAENKVFGELGF 129

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           +   K    ++  ++L+ V GC++Q E    +ILR  P V++V G    +RLP +L+ A 
Sbjct: 130 LLKYK----RKNPEMLIGVCGCMSQEESVVNKILRSYPHVDMVFGTHNIHRLPNILKEAY 185

Query: 145 FGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             K +V   +S E D  E L        R   + A++ I  GCDKFCT+C+VPYTRG E 
Sbjct: 186 MSKEMVVEVWSKEGDVIENLP-----KKRLGSIKAWVNIMYGCDKFCTYCIVPYTRGKER 240

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR   +++ E R+L   G  EI LLGQNVNA+ GK  +  +    DL+ +L +I  + R+
Sbjct: 241 SRRPEEIIAEVRELAAAGYQEIMLLGQNVNAY-GKDFEDIEYRLGDLMDALRKI-DIPRI 298

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+TTSHPRD  D LI+       L+ ++HLPVQSGS+ ILK M R++T   +  ++++I+
Sbjct: 299 RFTTSHPRDFDDQLIEVLAKRGNLVEHIHLPVQSGSNDILKIMARKYTREHFLTLVEKIK 358

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           +  P++ +++D IVG+P ET++ F  T+ L  ++G+  AF++ YSPR GTP + M++ V 
Sbjct: 359 AAIPEVTLTTDIIVGYPNETEEQFEETLSLYREVGFEAAFTYIYSPREGTPAAKMVDNVP 418

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVLNS 442
           E VK ERL  L + + E      +   G+++EVL+E   K +   L G +   + V   +
Sbjct: 419 EEVKKERLQRLNEVVGEYSRKALERLNGEVVEVLVEGTSKRRDDVLAGYTRKNRLVNFKA 478

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
               IG ++KV+I +    +L GE +
Sbjct: 479 PAEVIGQLVKVKIIETTSYSLTGEFL 504


>gi|332704873|ref|ZP_08424961.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Desulfovibrio africanus str. Walvis Bay]
 gi|332555022|gb|EGJ52066.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Desulfovibrio africanus str. Walvis Bay]
          Length = 474

 Score =  300 bits (767), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 173/450 (38%), Positives = 262/450 (58%), Gaps = 20/450 (4%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           F + ++GCQMNV DS  +     S+G++     + AD+I++NTC +R+K  +KVYS LGR
Sbjct: 32  FHILTFGCQMNVGDSQWLSRALRSRGWQETTD-EQADVIIINTCSVRDKPEQKVYSLLGR 90

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           + ++    ++E G   V V GCVAQ  G     R P V +V G      +P+ LER    
Sbjct: 91  LASI----VRETG-AFVAVGGCVAQQIGAGFWNRFPFVRLVFGTDGVAGVPQALERLAST 145

Query: 147 KRVVDT--DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            R+  +  D+S E         D   +     +AF+TI +GC+ FC +C+VPY RG + S
Sbjct: 146 PRLRLSLLDFSEEYVERGQDFPDASVS----PSAFVTIMQGCNNFCAYCIVPYVRGRQKS 201

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R+ + ++ E   LI  G  EITLLGQNVN++ G+   G+  +F+ LL  ++ + GL RLR
Sbjct: 202 RTSASIISECESLIARGAREITLLGQNVNSY-GQDAGGDGLSFTQLLRRVAVLPGLARLR 260

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           + TSHP+D++  ++ A G+L+ L P LHLP+QSGSD +L  M R++    Y  I+ R+R 
Sbjct: 261 FVTSHPKDIAPEVVAAFGELEQLCPCLHLPMQSGSDAVLARMGRKYDRARYLDIVRRLRQ 320

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
            RP + +++D IVGFPGET+ DFRATMD+++++ + ++FSFKYS R G     M  +V E
Sbjct: 321 ARPGMVLTTDIIVGFPGETEQDFRATMDVLEEVRFERSFSFKYSDRPGVAAERMAFKVPE 380

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK--EKGKLV--GRSPWLQSV-- 438
            VKAERL   Q +  E       A  G+ + VL+E+  K  ++G L   GR P  + V  
Sbjct: 381 EVKAERLASFQARQAELTAEDLRAQEGRRVSVLLEELSKRQDEGGLSWRGREPGGRVVDI 440

Query: 439 -VLNSKNHNIGDIIKVRITDVKISTLYGEL 467
            V++      G +  VRI+  +  +L GE+
Sbjct: 441 PVIDGGPDLTGALATVRISLARKHSLLGEM 470


>gi|297571230|ref|YP_003697004.1| RNA modification enzyme, MiaB family [Arcanobacterium haemolyticum
           DSM 20595]
 gi|296931577|gb|ADH92385.1| RNA modification enzyme, MiaB family [Arcanobacterium haemolyticum
           DSM 20595]
          Length = 514

 Score =  300 bits (767), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 162/426 (38%), Positives = 261/426 (61%), Gaps = 34/426 (7%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQG----------YERVNSMDD--ADLIVLNTCHIRE 74
           + V++ GCQMNV+DS RM  +    G            R     D  AD++V+NTC +RE
Sbjct: 13  YAVRTLGCQMNVHDSERMAGLLDQAGIVPVELVPEKAARATEAGDQGADVLVINTCSVRE 72

Query: 75  KAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYY 134
            AA K++  LG+++ +K++R     D+ + V GC+AQ   + I++R+P V+VV+G     
Sbjct: 73  NAANKLFGHLGQLKAVKDAR----PDMQIAVGGCLAQQMRDGIVKRAPWVDVVLGTHNLD 128

Query: 135 RLPELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC 193
            LP LLERAR  K+  V+ + S++     L       +R+    A+++I  GC+  CTFC
Sbjct: 129 VLPALLERARHNKKAAVEIEESLKVFPSTLPT-----HRESAYAAWVSISVGCNNTCTFC 183

Query: 194 VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS 253
           +VP+ RG E  R   +++ E   ++  G  E+TLLGQNVN++ G G  G++  F+ LL +
Sbjct: 184 IVPHLRGKERDRRPGEILSEVEAVVSEGAIEVTLLGQNVNSY-GVGF-GDRGAFAKLLRA 241

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
             +I GL R+R+T+ HP   +D +I A  +   +MP LH+P+QSGSDR+L++M R + + 
Sbjct: 242 CGDIDGLERVRFTSPHPAAFTDDVIDAMAETPNVMPTLHMPLQSGSDRVLRAMRRSYRSA 301

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
           ++  I+DR+R   P+ AI++D IVGFPGET++DF+AT+D+V+K  +A AF+F YSPR GT
Sbjct: 302 KFLGILDRVRERIPNAAITTDIIVGFPGETEEDFQATLDVVEKSRFASAFTFLYSPRPGT 361

Query: 374 PGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK----G 426
           P ++M +QV  +V +E   RL+ LQ ++  ++   N   +G+ ++VL+   G  K     
Sbjct: 362 PAADMEDQVPADVASERYQRLIALQNRITLEE---NQKLIGERVDVLVSSDGGRKDASTS 418

Query: 427 KLVGRS 432
           ++ GR+
Sbjct: 419 RITGRA 424


>gi|229890689|sp|Q8FPD5|MIAB_COREF RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
          Length = 524

 Score =  299 bits (766), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 159/449 (35%), Positives = 257/449 (57%), Gaps = 27/449 (6%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           + V+++GCQMNV+DS R+  +    GY      D  DLIV NTC +RE A +++Y  LG 
Sbjct: 29  YEVRTFGCQMNVHDSERLSGLLEEAGYTAAGEGDTPDLIVFNTCAVRENADQRLYGTLGN 88

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           +R +K +       + + V GC+AQ + + +++++P V+VV G      LP LL RA   
Sbjct: 89  LRAVKENHPG----MQIAVGGCLAQKDKDTVVKKAPWVDVVFGTHNIASLPTLLNRAEHN 144

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           ++    +  + D  E+   V     R+     ++++  GC+  CTFC+VP  RG E  R 
Sbjct: 145 QKA---EVEIVDSLEQFPSVLPA-KRESAYAGWVSVSVGCNNTCTFCIVPSLRGKEQDRR 200

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE----KCTFSDLLYSLSEIKGLVR 262
              ++ E + L+D GV E+TLLGQNVNA+    +D E    +  FS LL +  +I+GL R
Sbjct: 201 PGDILAEVQALVDQGVSEVTLLGQNVNAYGVNFVDPELERDRSAFSKLLRACGDIEGLER 260

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+T+ HP + +  +I A  +   + P LH+P+QSGSDR+LK M R + + ++  I+D +
Sbjct: 261 VRFTSPHPAEFTSDVIDAMAETPNICPQLHMPLQSGSDRVLKEMRRSYRSAKFLAILDEV 320

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+  P  +I++D IVGFPGET++DF+AT+D+V+K  +  A++F+YSPR GTP ++   QV
Sbjct: 321 RAKIPHASITTDIIVGFPGETEEDFQATLDVVEKARFTSAYTFQYSPRPGTPAADYENQV 380

Query: 383 DENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV---------G 430
            + V   + ERL+ LQ+++ E++   N   +GQ +E+L++  G  K             G
Sbjct: 381 PKKVVQERYERLMALQERICEEE---NQKFIGQTVELLVQAGGGRKNDATKRMSGRARDG 437

Query: 431 RSPWLQSVVLNSKNHNIGDIIKVRITDVK 459
           R      V         GD++ V +T+ K
Sbjct: 438 RLVHFTPVGTIDGEIRPGDVVTVEVTEAK 466


>gi|311030160|ref|ZP_07708250.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus sp.
           m3-13]
          Length = 514

 Score =  299 bits (766), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 165/411 (40%), Positives = 247/411 (60%), Gaps = 14/411 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           V ++F++++YGCQMN +D+  M  +F + GYE   +++DAD+I+LNTC IRE A  KV+ 
Sbjct: 66  VGKKFYIRTYGCQMNEHDTEVMAGIFLALGYEATYTVNDADVILLNTCAIRENAENKVFG 125

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELL 140
            LG ++ LK SR      LL+ V GC++Q E    +IL+    V+++ G    +RLP +L
Sbjct: 126 ELGHLKTLKKSR----PGLLIGVCGCMSQEESVVNKILKTYQQVDMIFGTHNIHRLPNIL 181

Query: 141 ERARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           + A   K +V   +S E D  E L       NRK  + A++ I  GCDKFCT+C+VPYTR
Sbjct: 182 KDAYMSKEMVIEVWSKEGDVIENLP-----KNRKGEIKAWVNIMYGCDKFCTYCIVPYTR 236

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G E SR    ++ E R L   G  EITLLGQNVNA+ GK  +  K    DL+  + +I  
Sbjct: 237 GKERSRRPEDIIQEVRHLAAQGYKEITLLGQNVNAY-GKDFEDIKYGLGDLMDEIRKID- 294

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           + R+R+TTSHPRD  D L++       L+ ++HLPVQSGS  ILK M R++    Y +++
Sbjct: 295 IPRIRFTTSHPRDFDDRLVEVLAKGGNLLDHIHLPVQSGSSEILKLMARKYDRERYLELV 354

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            +I++  P+ ++++D IVGFP ET++ F  TM L  ++ +  A++F YSPR GTP + M+
Sbjct: 355 GKIKAAMPNASLTTDIIVGFPNETEEQFEETMSLYREVEFDTAYTFIYSPREGTPAAKMV 414

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG 430
           + V   VK +RL  L   + E          GQI+EVL+E   K+  +++ 
Sbjct: 415 DNVPLEVKKDRLQRLNALVNEISAKKLKEYEGQIVEVLVEGESKKNPEVLA 465


>gi|295836161|ref|ZP_06823094.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Streptomyces sp. SPB74]
 gi|197695257|gb|EDY42190.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Streptomyces sp. SPB74]
          Length = 513

 Score =  299 bits (766), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 173/454 (38%), Positives = 264/454 (58%), Gaps = 29/454 (6%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSM---DDADLIVLNTCHIREKAAEKVYSF 83
           + +++YGCQMNV+DS R+  +    GY R        DAD++V NTC +RE A  ++Y  
Sbjct: 22  YEIRTYGCQMNVHDSERLAGLLEGAGYVRAPESAGDSDADVVVFNTCAVRENADNRLYGN 81

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR+   K  R      + + V GC+AQ + + I+ R+P V+VV G     +LP LLERA
Sbjct: 82  LGRLAPKKTERP----GMQIAVGGCLAQKDRQTIVDRAPWVDVVFGTHNIGKLPVLLERA 137

Query: 144 RFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           R  +   V+   S+E     L        R+    A++++  GC+  CTFC+VP  RG E
Sbjct: 138 RVQEEAQVEIAESLEAFPSTLPT-----RRESAYAAWVSVSVGCNNTCTFCIVPALRGKE 192

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLV 261
             R    ++ E   L+  GV EITLLGQNVNA+   G D G++  FS LL +   ++GL 
Sbjct: 193 KDRRPGDILAEVEALVAEGVSEITLLGQNVNAY---GSDIGDREAFSKLLRACGRVEGLE 249

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+T+ HPRD +D +I A  +   +MP LH+P+QSGSD +L++M R +    Y  II++
Sbjct: 250 RVRFTSPHPRDFTDDVIAAMAETPNVMPQLHMPLQSGSDTVLRAMRRSYRQDRYLGIIEK 309

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R+  PD AIS+D IVGFPGET++DF  T+ +V +  +A AF+F+YS R GTP + M +Q
Sbjct: 310 VRAAIPDAAISTDIIVGFPGETEEDFEQTLHVVREARFAAAFTFQYSKRPGTPAAEMDDQ 369

Query: 382 VDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKG---KLVGRSPW 434
           + + V   + ERL+ LQ+++  ++   N   VG+ ++V++ E  G++ G   +L GR+P 
Sbjct: 370 IPKEVVQKRYERLVALQEEISWEE---NKKQVGRTLDVMVAEGEGRKDGATQRLSGRAPD 426

Query: 435 LQSVVLNSKNHNI--GDIIKVRITDVKISTLYGE 466
            + V        +  GD++ V IT      L  E
Sbjct: 427 NRLVHFTKPQEPVRPGDVVTVDITYAAPHHLLAE 460


>gi|311744192|ref|ZP_07717997.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Aeromicrobium marinum DSM
           15272]
 gi|311312547|gb|EFQ82459.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Aeromicrobium marinum DSM
           15272]
          Length = 487

 Score =  299 bits (766), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 171/439 (38%), Positives = 260/439 (59%), Gaps = 23/439 (5%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           + V++YGCQMNV+DS R+  +  + GYE V +    DL+V NTC +RE A  K+Y  LG 
Sbjct: 5   YEVRTYGCQMNVHDSERLSGLLETAGYEPVGA-GTPDLVVFNTCAVRENADNKLYGNLGH 63

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           + ++K +       + + V GC+AQ + + I RR+P V+VV G      LP LLERAR  
Sbjct: 64  VASVKAAH----PGMQIAVGGCLAQKDRDTITRRAPYVDVVFGTHNIGSLPVLLERARVA 119

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRG--VTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
           +       S  +  E L +       KR     A+++I  GC+  CTFC+VP  RG E  
Sbjct: 120 EE------SQVEILESLEVFPSTLPTKRDSVFAAWVSISVGCNNTCTFCIVPALRGKEKD 173

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRL 263
           R    V+ E   L+ +GV E+TLLGQNVNA+   G++ G+   F+ LL +   I+GL R+
Sbjct: 174 RRPGDVLAEIEALVADGVVEVTLLGQNVNAY---GVEFGDSQAFAKLLRACGRIEGLERV 230

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+T+ HP+D +D +I A  +   +MP LH+P+QSGSDR+L++M R +   ++  IIDR+R
Sbjct: 231 RFTSPHPKDFTDDVIAAMAETPTVMPQLHMPLQSGSDRVLRAMRRSYRREKFLGIIDRVR 290

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           +  PD AI++D IVGFPGET++DF  T+++V    +  AF+F+YS R GTP +++ +Q+ 
Sbjct: 291 AAMPDAAITTDIIVGFPGETEEDFVQTLEVVRAARFTSAFTFQYSRRPGTPAADLPDQLP 350

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKH-GKEKG---KLVGRSPWLQSVV 439
           + V  ER   L + + E   +      G+++E+L+  H GK+ G   +L GR+   + V 
Sbjct: 351 KAVVQERYDRLVEVVDEVAWAEARTQEGRVVELLVSDHEGKKDGATRRLTGRARDNRLVH 410

Query: 440 LNSKNHNI--GDIIKVRIT 456
                H I  GD++ VRIT
Sbjct: 411 FVPGEHEIRPGDVVDVRIT 429


>gi|115379590|ref|ZP_01466678.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Stigmatella aurantiaca
           DW4/3-1]
 gi|115363417|gb|EAU62564.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Stigmatella aurantiaca
           DW4/3-1]
          Length = 443

 Score =  299 bits (766), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 179/423 (42%), Positives = 257/423 (60%), Gaps = 25/423 (5%)

Query: 52  GYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQ 111
            Y    + D+ADLI+LNTC IREKA +K+ S LGR R +K SR       L+ V GCVAQ
Sbjct: 5   AYAPTPTPDNADLIILNTCAIREKAEDKMLSALGRYRPVKVSR-----GALIGVGGCVAQ 59

Query: 112 AEGEEILRRSPIVNVVVGPQTYYRLPELLER-ARFGKRVVDTDY--SVEDKFERLSIVDG 168
            E + +L++ P V+ V GP    +LPE++ R ++  +RVV+T +  S E  F R    D 
Sbjct: 60  QEKDRLLKKVPYVDFVFGPDNIGKLPEIITRVSQERERVVETAFVDSEEYVFPR---ADP 116

Query: 169 GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLL 228
             +R + VT F+T+ +GCD  C+FCVVP+TRG E+SR+   V+ E   L   G+ E+TL+
Sbjct: 117 ETSRGK-VTEFVTVMKGCDNVCSFCVVPHTRGREVSRAFPDVLTEVADLARVGLREVTLI 175

Query: 229 GQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLM 288
           GQNVN++RG        +F+ LL   +E+ G+ R+R+TTSHP D+SD LI A      + 
Sbjct: 176 GQNVNSYRGG------ISFAQLLLRTAEVPGIERVRFTTSHPHDLSDELIDAFRTQPKIA 229

Query: 289 PYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFR 348
           P+ HLPVQ GSDRILK M R +T  +Y + ++++R+ RP IA+++D IVGFPGET++DF 
Sbjct: 230 PHFHLPVQCGSDRILKMMRRDYTVVQYLERLEKLRAARPGIAVTTDIIVGFPGETEEDFE 289

Query: 349 ATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ----VDENVKAERLLCLQKKLREQQVS 404
            TM L +++ Y   FSF +SPR  T G+ + E+    V   VK  RL  LQK  R+    
Sbjct: 290 MTMQLTEQVRYESQFSFIFSPRPKT-GAALREKDWGSVPHEVKIARLERLQKVQRKICGE 348

Query: 405 FNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTL 463
              + VG  +EVL+E H K + GK  GRSP  ++V  +  +   G I+KV +     + L
Sbjct: 349 IAVSQVGLEVEVLVEGHSKYDAGKRFGRSPENRTVNFDG-DAPAGAIVKVLVDRATPNHL 407

Query: 464 YGE 466
            G+
Sbjct: 408 MGK 410


>gi|120437909|ref|YP_863595.1| tRNA-i(6)A37 modification enzyme MiaB [Gramella forsetii KT0803]
 gi|229890549|sp|A0M7D3|MIAB_GRAFK RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|117580059|emb|CAL68528.1| tRNA-i(6)A37 modification enzyme MiaB [Gramella forsetii KT0803]
          Length = 481

 Score =  299 bits (766), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 180/462 (38%), Positives = 265/462 (57%), Gaps = 28/462 (6%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F++SYGC MN  DS  +  +   +G+    ++++ADL+++NTC IREKA + V   L
Sbjct: 24  RKLFIESYGCAMNFSDSEIVASILSKEGFNTTQNLEEADLVLVNTCSIREKAEQTVRKRL 83

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            +   +K  RI  G  + V V GC+A+   ++ L    IV++VVGP  Y  LP L+    
Sbjct: 84  EKYNAVK--RINPG--MKVGVLGCMAERLKDKFLEEEKIVDLVVGPDAYKDLPNLINEVE 139

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G+  ++   S E+ +  +S V    N   GV+AF++I  GCD  CTFCVVP+TRG E S
Sbjct: 140 EGRDAINVILSKEETYGDISPVRLQSN---GVSAFVSITRGCDNMCTFCVVPFTRGRERS 196

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNA--WRGKGLDG--------EKCT---FSDLL 251
           R    +V+E   L   G  EITLLGQNV++  W G GL          +K T   F+ LL
Sbjct: 197 RDPQSIVEEVNDLAAKGYKEITLLGQNVDSYLWYGGGLKKDFKNATEIQKATATNFAALL 256

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
             ++E +  +R+R++TS+P+DM+  +I+A      +  Y+HLPVQSGSDRILK MNR HT
Sbjct: 257 KLVAEAQPKMRIRFSTSNPQDMTLDVIEAMAAYRNICNYIHLPVQSGSDRILKKMNRLHT 316

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
             EY  +ID I+ + P+  IS D I GFP ET++D + T+ L++ + Y   + F YS R 
Sbjct: 317 REEYFTLIDNIKKMIPNCGISHDLITGFPTETEEDHQDTLSLMEYVKYDFGYMFTYSERP 376

Query: 372 GTPGSNMLE-QVDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK 427
           GT     LE  + E  K  RL   + LQ+K  +Q     ++ +G  +EVLIEK  K+  K
Sbjct: 377 GTTAERKLEDDIPEETKKRRLQEIVDLQQKHSKQNT---NSVIGTTVEVLIEKESKKSNK 433

Query: 428 -LVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
              GR+      V + +N+ IGD +KV+I D   +TL GE +
Sbjct: 434 HWSGRNERNTVTVFSKENYQIGDFVKVKIHDCTSATLIGEPI 475


>gi|25028399|ref|NP_738453.1| hypothetical protein CE1843 [Corynebacterium efficiens YS-314]
 gi|23493684|dbj|BAC18653.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
          Length = 600

 Score =  299 bits (766), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 159/449 (35%), Positives = 257/449 (57%), Gaps = 27/449 (6%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           + V+++GCQMNV+DS R+  +    GY      D  DLIV NTC +RE A +++Y  LG 
Sbjct: 105 YEVRTFGCQMNVHDSERLSGLLEEAGYTAAGEGDTPDLIVFNTCAVRENADQRLYGTLGN 164

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           +R +K +       + + V GC+AQ + + +++++P V+VV G      LP LL RA   
Sbjct: 165 LRAVKENHPG----MQIAVGGCLAQKDKDTVVKKAPWVDVVFGTHNIASLPTLLNRAEHN 220

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           ++    +  + D  E+   V     R+     ++++  GC+  CTFC+VP  RG E  R 
Sbjct: 221 QKA---EVEIVDSLEQFPSVLPA-KRESAYAGWVSVSVGCNNTCTFCIVPSLRGKEQDRR 276

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE----KCTFSDLLYSLSEIKGLVR 262
              ++ E + L+D GV E+TLLGQNVNA+    +D E    +  FS LL +  +I+GL R
Sbjct: 277 PGDILAEVQALVDQGVSEVTLLGQNVNAYGVNFVDPELERDRSAFSKLLRACGDIEGLER 336

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+T+ HP + +  +I A  +   + P LH+P+QSGSDR+LK M R + + ++  I+D +
Sbjct: 337 VRFTSPHPAEFTSDVIDAMAETPNICPQLHMPLQSGSDRVLKEMRRSYRSAKFLAILDEV 396

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+  P  +I++D IVGFPGET++DF+AT+D+V+K  +  A++F+YSPR GTP ++   QV
Sbjct: 397 RAKIPHASITTDIIVGFPGETEEDFQATLDVVEKARFTSAYTFQYSPRPGTPAADYENQV 456

Query: 383 DENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV---------G 430
            + V   + ERL+ LQ+++ E++   N   +GQ +E+L++  G  K             G
Sbjct: 457 PKKVVQERYERLMALQERICEEE---NQKFIGQTVELLVQAGGGRKNDATKRMSGRARDG 513

Query: 431 RSPWLQSVVLNSKNHNIGDIIKVRITDVK 459
           R      V         GD++ V +T+ K
Sbjct: 514 RLVHFTPVGTIDGEIRPGDVVTVEVTEAK 542


>gi|302554591|ref|ZP_07306933.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Streptomyces
           viridochromogenes DSM 40736]
 gi|302472209|gb|EFL35302.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Streptomyces
           viridochromogenes DSM 40736]
          Length = 508

 Score =  299 bits (765), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 176/456 (38%), Positives = 266/456 (58%), Gaps = 28/456 (6%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDD--ADLIVLNTCHIREKAAEKVYSFL 84
           + V++YGCQMNV+DS R+  +    GY R     D  AD++V NTC +RE A  K+Y  L
Sbjct: 16  YEVRTYGCQMNVHDSERLAGLLEDAGYVRAPEGSDGEADVVVFNTCAVRENADNKLYGNL 75

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           G +   K  R      + + V GC+AQ + + I++++P V+VV G     +LP LLERAR
Sbjct: 76  GHLAPKKAGRP----GMQIAVGGCLAQKDRDTIVKKAPWVDVVFGTHNIGKLPVLLERAR 131

Query: 145 FGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             +   V+   S+E     L        R+    A+++I  GC+  CTFC+VP  RG E 
Sbjct: 132 VQEEAQVEIAESLEAFPSTLPT-----RRESAYAAWVSISVGCNNTCTFCIVPALRGKEK 186

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVR 262
            R    ++ E   L+ +GV EITLLGQNVNA+   G D G++  FS LL +  +I+GL R
Sbjct: 187 DRRPGDILAEIEALVADGVSEITLLGQNVNAY---GSDIGDREAFSKLLRACGKIEGLER 243

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+T+ HPRD +D +I A  +   +MP LH+P+QSGSD +LK+M R +    Y  II+++
Sbjct: 244 VRFTSPHPRDFTDDVIAAMAETPNVMPQLHMPLQSGSDPVLKAMRRSYRQERYLGIIEKV 303

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+  P  AIS+D IVGFPGET++DF  T+ +V +  +AQAF+F+YS R GTP + M  Q+
Sbjct: 304 RAAIPHAAISTDIIVGFPGETEEDFEQTLHVVREARFAQAFTFQYSKRPGTPAAEMDGQI 363

Query: 383 DENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKE---KGKLVGRSPWL 435
            + V   + ERL+ LQ+++  ++   N   VG+ +E+++ E  G++     +L GR+P  
Sbjct: 364 PKKVVQERYERLVALQEEISWEE---NKKQVGRTLELMVAEGEGRKDDSTHRLSGRAPDN 420

Query: 436 QSVVLNSKNHNI--GDIIKVRITDVKISTLYGELVV 469
           + V     +  +  GD++ V IT      L  E  V
Sbjct: 421 RLVHFTKPDQEVRPGDVVTVEITYAAPHHLLAEGAV 456


>gi|298483271|ref|ZP_07001450.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacteroides sp. D22]
 gi|298270588|gb|EFI12170.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacteroides sp. D22]
          Length = 457

 Score =  299 bits (765), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 166/449 (36%), Positives = 264/449 (58%), Gaps = 20/449 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F+++YGCQMNV DS  +  +    GY    ++++AD + +NTC IR+ A +K+ + L
Sbjct: 20  KKLFIETYGCQMNVADSEVIASVMQMAGYSVAETLEEADAVFMNTCSIRDNAEQKILNRL 79

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
               +LK    K+   L+V V GC+A+   ++++     V++VVGP  Y  LP+L+    
Sbjct: 80  EFFHSLK----KKKKRLIVGVLGCMAERVKDDLITNHH-VDLVVGPDAYLTLPDLIAAVE 134

Query: 145 FGKRVVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            G++ ++ + S  + +  +  S + G +     ++ F++I  GC+ FCT+C+VPYTRG E
Sbjct: 135 TGEKAINVELSTTETYRDVIPSRICGNH-----ISGFVSIMRGCNNFCTYCIVPYTRGRE 189

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR +  +++E   L+  G  E+TLLGQNVN++R +   GE  TF  LL +++E    VR
Sbjct: 190 RSRDVESILNEVADLVAKGYKEVTLLGQNVNSYRFERPTGEVVTFPMLLRTVAEAAPGVR 249

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP+DMSD  ++    +  +  ++HLPVQSGS RILK MNR++T   Y   +  I
Sbjct: 250 IRFTTSHPKDMSDETLEVIAQVPNVCKHIHLPVQSGSSRILKLMNRKYTREWYLDRVAAI 309

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE-Q 381
           + + PD  +++D   GF  ET++D   ++ L++  GY  AF FKYS R GT  S  LE  
Sbjct: 310 KRIIPDCGLTTDIFSGFHSETEEDHAMSLSLMEACGYDAAFMFKYSERPGTYASKHLEDN 369

Query: 382 VDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQS 437
           V E VK  RL   + LQ +L  +    N  C+G+  EVL+E   K  + +L GR+   + 
Sbjct: 370 VPEEVKVHRLNEIIALQNRLSAES---NQRCIGKTYEVLVEGVSKRSRDQLFGRTEQNRV 426

Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGE 466
           VV +   H +GD + VR+T+   +TL GE
Sbjct: 427 VVFDRGTHRVGDFVNVRVTEASSATLKGE 455


>gi|293400769|ref|ZP_06644914.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Erysipelotrichaceae
           bacterium 5_2_54FAA]
 gi|291305795|gb|EFE47039.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Erysipelotrichaceae
           bacterium 5_2_54FAA]
          Length = 479

 Score =  299 bits (765), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 176/449 (39%), Positives = 265/449 (59%), Gaps = 16/449 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +++++++YGCQ N  DS  +  +     +  V   + ADLI+LNTC IR+ A +KV   +
Sbjct: 43  KKYYLRTYGCQANERDSETLAGILEELMFTPVEHPEQADLILLNTCAIRKNAEDKVLGEI 102

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G ++ LK S      DL+  + GC+AQ E   + +L +   VN++ G    +RLPELL  
Sbjct: 103 GSLKRLKRS----NPDLIFGLCGCMAQEEDVVQVLLEKYRHVNLIFGTHNLHRLPELLYE 158

Query: 143 ARFG-KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
              G KR V+      +  E L +   G ++     A++ I  GCDKFCT+C+VPYTRG 
Sbjct: 159 VMVGHKRSVEVLSKEGEVIENLPVRRFGKHK-----AWVNIMYGCDKFCTYCIVPYTRGK 213

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR++  V+ E R+L  +G  EITLLGQNVN++ GK L  E   F+ LL   ++I G+ 
Sbjct: 214 ERSRAMEDVLQEIRQLKQDGYKEITLLGQNVNSY-GKDLHIEG-GFAKLLEETAKI-GIE 270

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHP D SD +I      D +MP++HLPVQSG D ILK M RR+T+ +Y  +  +
Sbjct: 271 RIRFTTSHPWDFSDEMIDVIARFDNIMPFIHLPVQSGDDEILKIMGRRYTSAQYLTLFHK 330

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I+   P+ AIS+D IVGFP E+++ F+ T+DLV +  +  AF+F YSPR GTP + M + 
Sbjct: 331 IKERMPECAISTDIIVGFPNESEEQFQHTLDLVKECQFDNAFTFIYSPREGTPAARMADS 390

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL-VGRSPWLQSVVL 440
           V   VK  RL  L           N+A +G++++VL++   K+K  +  G +   + V  
Sbjct: 391 VSLEVKQRRLAELNACWNHYAHVKNEAYLGKVVKVLVDGASKKKANVWSGYTETNKLVNF 450

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELVV 469
             ++   GDI+KV+IT  K  +L GE ++
Sbjct: 451 TGEHVTAGDIVKVKITACKTFSLDGEQIL 479


>gi|294782966|ref|ZP_06748292.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Fusobacterium sp.
           1_1_41FAA]
 gi|294481607|gb|EFG29382.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Fusobacterium sp.
           1_1_41FAA]
          Length = 435

 Score =  299 bits (765), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 164/441 (37%), Positives = 266/441 (60%), Gaps = 16/441 (3%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           +YGCQMNV +S +++ +F + GY+     DDAD + LNTC +RE AA +++  LG +++L
Sbjct: 8   TYGCQMNVNESAKIKKIFQNLGYDVTEETDDADAVFLNTCTVREGAATQIFGKLGELKSL 67

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
           K     E    ++ V GC AQ +GEE++++ PI+++V+G Q   R+P+ +E+    +   
Sbjct: 68  K-----EKKGTIIGVTGCFAQEQGEELVKKFPIIDIVMGNQNIGRIPQAIEKIENNESSH 122

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
           +     ED  E    +D  +   +  TA ++I  GC+ FCTFC+VPY RG E S  L ++
Sbjct: 123 EVYTDNED--ELPPRLDAEFASDQ--TASISITYGCNNFCTFCIVPYVRGRERSVPLEEI 178

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270
           V +  + ++ G  EI LLGQNVN++     +G+   F+ LL  + +++G   +R+ + HP
Sbjct: 179 VKDVEQYVNKGAKEIVLLGQNVNSYGKDFKNGD--NFAKLLEEICKVEGDYIVRFVSPHP 236

Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330
           RD +D +I      D +   LHLP+QSGS +IL+ M R +T  +Y  ++D+I+S  PD+A
Sbjct: 237 RDFTDDVIDVIAKNDKISKCLHLPLQSGSSQILRKMGRGYTKEKYLALVDKIKSKIPDVA 296

Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER 390
           +++D IVGFPGET++DF  T+D+V+K+ +  ++ F YS R GT  + M  Q+DENVK ER
Sbjct: 297 LTADIIVGFPGETEEDFLDTVDVVEKVSFDNSYMFMYSIRKGTKAATMDNQIDENVKKER 356

Query: 391 LLCLQKKLREQQVSFNDAC--VGQIIEVLIEKHGKE-KGKLVGRSPWLQSVVLNSKNHNI 447
           L  L K   + + SFN++     +++ VL+E   K+ K  L GR+   + V+        
Sbjct: 357 LQRLMK--VQNECSFNESSKYKDKVVRVLVEGPSKKNKEVLSGRTSTNKIVLFKGDTALK 414

Query: 448 GDIIKVRITDVKISTLYGELV 468
           G  + V+I + K  TLYG++V
Sbjct: 415 GQFVDVKINECKTWTLYGDIV 435


>gi|260907232|ref|ZP_05915554.1| RNA modification enzyme, MiaB family protein [Brevibacterium linens
           BL2]
          Length = 498

 Score =  299 bits (765), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 167/446 (37%), Positives = 264/446 (59%), Gaps = 25/446 (5%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+ + VK+YGCQMNV+DS R+  +    GY   ++ D AD+IV NTC +RE A  ++Y  
Sbjct: 15  PRSYEVKTYGCQMNVHDSERLSGLLDDAGYVPADTDDQADVIVFNTCAVRENADNRLYGN 74

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LG++ ++K    +   D  + V GC+AQ + + I++++P V+VV G      LP LLERA
Sbjct: 75  LGQLAHVK----ERNPDFQIAVGGCMAQKDRDTIVKKAPWVDVVFGTHNMGSLPALLERA 130

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGV--TAFLTIQEGCDKFCTFCVVPYTRGI 201
           R  +     +  VE   E L +       +R    + +++I  GC+  CTFC+VP  RG 
Sbjct: 131 RHNQ-----EAQVE-ILESLDVFPSTLPSRRESQHSGWVSISVGCNNSCTFCIVPSLRGK 184

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E  R    ++ E   L+ +GV E+TLLGQNVN++  +  D  K  F+ LL ++ +++G+ 
Sbjct: 185 EKDRRPGDILAEVEALVADGVVEVTLLGQNVNSYGSEFRD--KGAFAKLLRAVGKVEGIE 242

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+T+ HP   SD +I A  +   +MP LH+P+QSGSD ILKSM R +    + +I+D 
Sbjct: 243 RVRFTSPHPASFSDDVIDAMAETPAVMPQLHMPLQSGSDSILKSMRRSYRTSRFMRILDS 302

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R   P+ AI++D IVGFPGET++DF  TMD+V +  ++QAF+F+YS R GTP + M +Q
Sbjct: 303 VREKIPNAAITTDIIVGFPGETEEDFLGTMDIVRRARFSQAFTFQYSIRPGTPAATMDDQ 362

Query: 382 VDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKGKLVGRSPWLQS 437
           V +++   + ERL  LQ ++  ++   N A +G+ +EVL+  +   +  +L GRS   + 
Sbjct: 363 VPKHIVQERFERLTALQDEISWEE---NTAQIGREVEVLVTTRPHDDSPRLTGRSADNRL 419

Query: 438 VVL----NSKNHNIGDIIKVRITDVK 459
           V +      +    GD +   +TD K
Sbjct: 420 VHVGIPDGEQMPRPGDFVTATVTDAK 445


>gi|282850159|ref|ZP_06259538.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Veillonella parvula ATCC
           17745]
 gi|282579652|gb|EFB85056.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Veillonella parvula ATCC
           17745]
          Length = 437

 Score =  299 bits (765), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 165/450 (36%), Positives = 259/450 (57%), Gaps = 21/450 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + +++ +YGCQMN  DS R+     S GY    +++ ADLI+LNTC +RE A  KVY  +
Sbjct: 2   KSYYIYTYGCQMNTADSERLSHQLESVGYIPTENVETADLILLNTCAVRENAETKVYGRI 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           G ++ LK    +   +L++ V GC+AQ    E+ +R+P +++V+G      + E++E  +
Sbjct: 62  GELKRLK----RNNKNLIIAVTGCMAQKNQAEMFKRAPHIDIVLGTHNIQHINEMIEEVQ 117

Query: 145 FGKR---VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
            G      VD D SV  + E  +  +G +       A++ I  GC+KFCT+C+VP+ RG 
Sbjct: 118 HGHTHQISVDMDNSVLPELE--AKPNGSF------YAWVPIMNGCNKFCTYCIVPHVRGR 169

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT-FSDLLYSLSEIKGL 260
           EISR +  +V E   L   G  EITLLGQNVN++   GLD +  T F  L+ +L  I G+
Sbjct: 170 EISRPVEAIVKEVTDLGVKGFKEITLLGQNVNSY---GLDFKDGTDFGTLVDALDGIPGI 226

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+RY TSHP+DMS  +I A G    ++ +LHLP+QSGS+RILK MNR +T   Y++++ 
Sbjct: 227 ERIRYMTSHPQDMSKSMIDALGRSSNIVTHLHLPIQSGSNRILKKMNRHYTVEHYKELLS 286

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
             R    D+ +++D IVGFPGET++DF+AT+ L+  + Y  A++F YS R GTP + M +
Sbjct: 287 YCREKIKDVVVTTDIIVGFPGETEEDFQATLQLLKDVRYDMAYTFIYSKRSGTPAATMDD 346

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSPWLQSVV 439
           Q+ E +K  RL  L     E     N    GQ+ ++++E    +++    GR+   + V+
Sbjct: 347 QIPEEIKRVRLQILMDVQNEISYELNKPMEGQVFDIIVEGPSPRDEDMWFGRTSGNKMVL 406

Query: 440 LNSKNH-NIGDIIKVRITDVKISTLYGELV 468
               +  +IG  +   I   +    YG ++
Sbjct: 407 FPKDDSLSIGQTVPAHIDKAQTWVCYGSIL 436


>gi|239928542|ref|ZP_04685495.1| hypothetical protein SghaA1_09973 [Streptomyces ghanaensis ATCC
           14672]
          Length = 496

 Score =  299 bits (765), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 177/453 (39%), Positives = 262/453 (57%), Gaps = 28/453 (6%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERV--NSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + V++YGCQMNV+DS R+  +    GY R    S  DAD++V NTC +RE A  K+Y  L
Sbjct: 7   YEVRTYGCQMNVHDSERLAGLLEDAGYVRAPEGSDGDADVVVFNTCAVRENADNKLYGNL 66

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           G +   K  R      + + V GC+AQ + + I++R+P V+VV G     +LP LLERAR
Sbjct: 67  GHLAPKKARRP----GMQIAVGGCLAQKDRDTIVKRAPWVDVVFGTHNIGKLPVLLERAR 122

Query: 145 FGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             +   V+   S+E     L        R+    A+++I  GC+  CTFC+VP  RG E 
Sbjct: 123 VQEEAQVEIAESLEAFPSTLPT-----RRESAYAAWVSISVGCNNTCTFCIVPALRGKEK 177

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVR 262
            R    ++ E   L+  GV EITLLGQNVNA+   G D G++  FS LL +   I GL R
Sbjct: 178 DRRPGDILAEIEALVAEGVSEITLLGQNVNAY---GSDIGDREAFSKLLRACGRIDGLER 234

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+T+ HPRD +D +I A  +   +MP LH+P+QSGSD +LK+M R +    Y  II+++
Sbjct: 235 VRFTSPHPRDFTDDVIAAMAETPNVMPQLHMPLQSGSDAVLKAMRRSYRQERYLGIIEKV 294

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+  P  AIS+D IVGFPGET++DF  T+ +V +  +AQAF+F+YS R GTP + M  Q+
Sbjct: 295 RAAIPHAAISTDIIVGFPGETEEDFEQTLHVVREARFAQAFTFQYSKRPGTPAAEMDGQI 354

Query: 383 DENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKE---KGKLVGRSPWL 435
            + V   + ERL+ LQ+++  ++   N   VG+ +E+++ E  G++     +L GR+P  
Sbjct: 355 PKKVVQERYERLVALQEEISWEE---NKKQVGRTLELMVAEGEGRKDDTTHRLSGRAPDN 411

Query: 436 QSVVLNSKNHNI--GDIIKVRITDVKISTLYGE 466
           + V        +  GD++ V IT      L  E
Sbjct: 412 RLVHFTKPEQEVRPGDVVTVEITYAAPHHLLAE 444


>gi|224014702|ref|XP_002297013.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220968393|gb|EED86741.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 432

 Score =  299 bits (765), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 166/403 (41%), Positives = 245/403 (60%), Gaps = 17/403 (4%)

Query: 33  GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92
           GCQMN+ DS R+E    S G   +   +  D+IVLNTC IR+ A +KVYS+LG       
Sbjct: 2   GCQMNLADSERIEGQLMSLGIRPLGEDEKPDVIVLNTCSIRDHAEQKVYSYLGP----HA 57

Query: 93  SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDT 152
            R + G D+ ++VAGCVAQ EG+ +LRR P +++V+GPQ   R+ +LLE    G +VV T
Sbjct: 58  KRKRAGEDITIIVAGCVAQQEGQSLLRRIPEIDLVMGPQYANRISDLLEDVANGNQVVAT 117

Query: 153 DYSVEDKFERLSIVDGGYNRKRG--VTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
           + S         I++     +RG  V A++ +  GC++ CT+C+VP TRG+E SR +  +
Sbjct: 118 EAS--------HIMEDSTKPRRGSDVCAWVNVIYGCNERCTYCIVPTTRGVEQSRPVESI 169

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270
           VDE +KL+++G  E+TLLGQN++A+    L   K  FSDLL  +  + GL RLR+ TSHP
Sbjct: 170 VDEVKKLVESGYKEVTLLGQNIDAYGRDMLPKRK--FSDLLRIVGGVDGLERLRFVTSHP 227

Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330
           R MS  ++ A  +      Y H+P QSGS+ ILK+M R HT  ++  I+DRIR   PD A
Sbjct: 228 RYMSLGVVDAVAETPTACEYFHVPFQSGSNDILKAMGRGHTREKFLGIVDRIRQRLPDAA 287

Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER 390
           I++D IVGFPGET+ DF+ T+DL++ + +    +  YSPR  TP S    Q+ E VK +R
Sbjct: 288 ITADVIVGFPGETEQDFQDTLDLMETVVFDNVNTAAYSPRPNTPASTWENQLSEEVKQDR 347

Query: 391 LLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRS 432
           L  + +             +G+++EVL+E+   K   +++GR+
Sbjct: 348 LQRINELNLRHASERRARMMGRVVEVLVEERNVKVPTQVMGRT 390


>gi|323356750|ref|YP_004223146.1| 2-methylthioadenine synthetase [Microbacterium testaceum StLB037]
 gi|323273121|dbj|BAJ73266.1| 2-methylthioadenine synthetase [Microbacterium testaceum StLB037]
          Length = 515

 Score =  299 bits (765), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 161/419 (38%), Positives = 258/419 (61%), Gaps = 26/419 (6%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+ + V+++GCQMNV+DS R+     S GY R ++  +AD+IV+NTC +R+ AA K+Y  
Sbjct: 23  PRTYEVRTFGCQMNVHDSERLSGSLESAGYVRADAGAEADVIVINTCAVRDNAAGKLYGT 82

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LG +++ K++       + + V GC+AQ + + + +++P V+VV G      LP +LERA
Sbjct: 83  LGHLKSRKDAH----AGMQIAVGGCLAQMDKDAVQQKAPWVDVVFGTHNMGSLPGMLERA 138

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGV--TAFLTIQEGCDKFCTFCVVPYTRGI 201
           R      + +  +E   E L I       KR    + +++I  GC+  CTFC+VP  RG 
Sbjct: 139 RH-----NGEAELE-ILESLEIFPSTLPTKRDSVHSGWVSISVGCNNTCTFCIVPSLRGK 192

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGL 260
           E  R    +++E R L+D+G  E+TLLGQNVN++   G++ G++  F  LL +  EI+GL
Sbjct: 193 EKDRRPGDILNEIRLLVDDGAIEVTLLGQNVNSY---GVEFGDRLAFGKLLRAAGEIEGL 249

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+T+ HP   +D +I A  +   +MP LH+P+QSGSDRILK+M R + + ++  I+D
Sbjct: 250 ERIRFTSPHPAAFTDDVIAAMAETPAVMPQLHMPLQSGSDRILKAMRRSYRSEKFLGILD 309

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           R+R   P  AI++D IVGFPGET++DF+ T+ +V+   ++ AF+F+YS R GTP + M +
Sbjct: 310 RVRERIPHAAITTDIIVGFPGETEEDFQETLRVVEAARFSSAFTFQYSIREGTPAATMAD 369

Query: 381 QVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIE----KHGKEKGKLVGRS 432
           QV + V   + ERL+ LQ ++  ++   N   +G+ +EVL+     K   E  +L GR+
Sbjct: 370 QVPKAVVQERYERLIALQDRIAAEE---NQKQLGRSLEVLVSAGEGKKDAETHRLTGRA 425


>gi|291436867|ref|ZP_06576257.1| RNA modification enzyme [Streptomyces ghanaensis ATCC 14672]
 gi|291339762|gb|EFE66718.1| RNA modification enzyme [Streptomyces ghanaensis ATCC 14672]
          Length = 505

 Score =  299 bits (765), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 177/453 (39%), Positives = 262/453 (57%), Gaps = 28/453 (6%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERV--NSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + V++YGCQMNV+DS R+  +    GY R    S  DAD++V NTC +RE A  K+Y  L
Sbjct: 16  YEVRTYGCQMNVHDSERLAGLLEDAGYVRAPEGSDGDADVVVFNTCAVRENADNKLYGNL 75

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           G +   K  R      + + V GC+AQ + + I++R+P V+VV G     +LP LLERAR
Sbjct: 76  GHLAPKKARRP----GMQIAVGGCLAQKDRDTIVKRAPWVDVVFGTHNIGKLPVLLERAR 131

Query: 145 FGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             +   V+   S+E     L        R+    A+++I  GC+  CTFC+VP  RG E 
Sbjct: 132 VQEEAQVEIAESLEAFPSTLPT-----RRESAYAAWVSISVGCNNTCTFCIVPALRGKEK 186

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVR 262
            R    ++ E   L+  GV EITLLGQNVNA+   G D G++  FS LL +   I GL R
Sbjct: 187 DRRPGDILAEIEALVAEGVSEITLLGQNVNAY---GSDIGDREAFSKLLRACGRIDGLER 243

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+T+ HPRD +D +I A  +   +MP LH+P+QSGSD +LK+M R +    Y  II+++
Sbjct: 244 VRFTSPHPRDFTDDVIAAMAETPNVMPQLHMPLQSGSDAVLKAMRRSYRQERYLGIIEKV 303

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+  P  AIS+D IVGFPGET++DF  T+ +V +  +AQAF+F+YS R GTP + M  Q+
Sbjct: 304 RAAIPHAAISTDIIVGFPGETEEDFEQTLHVVREARFAQAFTFQYSKRPGTPAAEMDGQI 363

Query: 383 DENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKE---KGKLVGRSPWL 435
            + V   + ERL+ LQ+++  ++   N   VG+ +E+++ E  G++     +L GR+P  
Sbjct: 364 PKKVVQERYERLVALQEEISWEE---NKKQVGRTLELMVAEGEGRKDDTTHRLSGRAPDN 420

Query: 436 QSVVLNSKNHNI--GDIIKVRITDVKISTLYGE 466
           + V        +  GD++ V IT      L  E
Sbjct: 421 RLVHFTKPEQEVRPGDVVTVEITYAAPHHLLAE 453


>gi|288556902|ref|YP_003428837.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
           pseudofirmus OF4]
 gi|288548062|gb|ADC51945.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
           pseudofirmus OF4]
          Length = 541

 Score =  298 bits (764), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 172/446 (38%), Positives = 256/446 (57%), Gaps = 15/446 (3%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           F +++YGCQMN +DS  M  +    G+   +   DAD+I+LNTC IRE A  KV+  +G 
Sbjct: 100 FHIRTYGCQMNTHDSENMAGLLTEMGFTETDDTKDADVILLNTCAIRENAENKVFGEIGH 159

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           +++LK    KE  ++++ V GC++Q E     I+++   ++++ G    +RLP LL+ A 
Sbjct: 160 LKSLK----KERPEVILGVCGCMSQEENVVNRIMQKHQHIDIIFGTHNIHRLPSLLQNAI 215

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT-AFLTIQEGCDKFCTFCVVPYTRGIEI 203
           +GK +V   +S E       IV+    ++ G T A++ I  GCDKFCT+C+VPYTRG E 
Sbjct: 216 YGKEMVIEVWSKEG-----DIVENMPRKREGKTQAWVNIMYGCDKFCTYCIVPYTRGKER 270

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR    ++DE R L   G  EITLLGQNVNA+ GK L         L+  + +I  + R+
Sbjct: 271 SRLPEDIIDEVRDLARQGYKEITLLGQNVNAY-GKDLKDRDYRLGHLMDDIHKID-IPRV 328

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+TTSHPRD  D LI        L+ ++HLPVQ G+  ILK M R++T  +Y ++  +I+
Sbjct: 329 RFTTSHPRDFDDHLISVLSKGGNLVEHIHLPVQHGNSDILKLMARKYTREQYVELAHKIK 388

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              P  + ++D IVGFP ET++ F  T+ LV +I +  AF++ YSPR GTP + M + V 
Sbjct: 389 MAIPKASFTTDLIVGFPNETEEQFEDTLSLVREIEFDSAFTYIYSPREGTPAAKMKDNVP 448

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVLNS 442
             VK ERL  L   + E     N     Q++EVL+E   K+    L GR+   + V    
Sbjct: 449 MEVKKERLARLNALVNEISAKKNLDYQDQVVEVLVEGESKKDPDVLAGRTRTNRLVNFKG 508

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
               IG+I+ V++ + K  +L GELV
Sbjct: 509 PKSIIGEIVYVKVNEAKTWSLTGELV 534


>gi|169827222|ref|YP_001697380.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Lysinibacillus
           sphaericus C3-41]
 gi|229890559|sp|B1HR59|MIAB_LYSSC RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|168991710|gb|ACA39250.1| UPF0004 protein [Lysinibacillus sphaericus C3-41]
          Length = 514

 Score =  298 bits (764), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 168/446 (37%), Positives = 263/446 (58%), Gaps = 15/446 (3%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           F++++YGCQMN +D+  M  +F   GY     +++AD+++LNTC IRE A  KV+  LG 
Sbjct: 70  FYIRTYGCQMNEHDTEVMAGIFMQLGYTPTEIIEEADVVLLNTCAIRENAENKVFGELGF 129

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           +   K    ++  ++L+ V GC++Q E    +ILR  P V++V G    +RLP +L+ A 
Sbjct: 130 LLKYK----RKNPEMLIGVCGCMSQEESVVNKILRSYPHVDMVFGTHNIHRLPNILKEAY 185

Query: 145 FGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             K +V   +S E D  E L        R   + A++ I  GCDKFCT+C+VPYTRG E 
Sbjct: 186 MSKEMVVEVWSKEGDVIENLP-----KKRLGSIKAWVNIMYGCDKFCTYCIVPYTRGKER 240

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR   +++ E R+L   G  EI LLGQNVNA+ GK  +  +    DL+ +L +I  + R+
Sbjct: 241 SRRPEEIIAEVRELAAAGYQEIMLLGQNVNAY-GKDFEDIEYRLGDLMDALRKI-DIPRI 298

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+TTSHPRD  D LI+       L+ ++HLPVQSGS+ ILK M R++T   +  ++++I+
Sbjct: 299 RFTTSHPRDFDDHLIEVLAKRGNLVEHIHLPVQSGSNDILKIMARKYTREHFLTLVEKIK 358

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           +  P++ +++D IVG+P ET++ F  T+ L  ++G+  AF++ YSPR GTP + M++ V 
Sbjct: 359 AAIPEVTLTTDIIVGYPNETEEQFEETLSLYREVGFEAAFTYIYSPREGTPAAKMVDNVP 418

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVLNS 442
           E VK ERL  L + + E      +   G+++EVL+E   K +   L G +   + V    
Sbjct: 419 EEVKKERLQRLNEVVGEYSRKALERLNGEVVEVLVEGTSKRRDDVLAGYTRKNRLVNFKG 478

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
               IG ++KV+I +    +L GE +
Sbjct: 479 PAEVIGQLVKVKIIETTSYSLTGEFL 504


>gi|160884905|ref|ZP_02065908.1| hypothetical protein BACOVA_02895 [Bacteroides ovatus ATCC 8483]
 gi|156109940|gb|EDO11685.1| hypothetical protein BACOVA_02895 [Bacteroides ovatus ATCC 8483]
          Length = 457

 Score =  298 bits (764), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 166/449 (36%), Positives = 264/449 (58%), Gaps = 20/449 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F+++YGCQMNV DS  +  +    GY    ++++AD + +NTC IR+ A +K+ + L
Sbjct: 20  KKLFIETYGCQMNVADSEVIASVMQMAGYSVAETLEEADAVFMNTCSIRDNAEQKILNRL 79

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
               +LK    K+   L+V V GC+A+   ++++     V++VVGP  Y  LP+L+    
Sbjct: 80  EFFHSLK----KKKKRLIVGVLGCMAERVKDDLITNHH-VDLVVGPDAYLTLPDLIAAVE 134

Query: 145 FGKRVVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            G++ ++ + S  + +  +  S + G +     ++ F++I  GC+ FCT+C+VPYTRG E
Sbjct: 135 TGEKAINVELSTTETYRDVIPSRICGNH-----ISGFVSIMRGCNNFCTYCIVPYTRGRE 189

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR +  +++E   L+  G  E+TLLGQNVN++R +   GE  TF  LL +++E    VR
Sbjct: 190 RSRDVESILNEVADLVAKGYKEVTLLGQNVNSYRFERPTGEVVTFPMLLRTVAEAAPGVR 249

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP+DMSD  ++    +  +  ++HLPVQSGS RILK MNR++T   Y   +  I
Sbjct: 250 IRFTTSHPKDMSDETLEVIAQVPNVCKHIHLPVQSGSSRILKLMNRKYTREWYLDRVAAI 309

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE-Q 381
           + + PD  +++D   GF  ET++D   ++ L++  GY  AF FKYS R GT  S  LE  
Sbjct: 310 KRIIPDCGLTTDIFSGFHSETEEDHAMSLSLMEACGYDAAFMFKYSERPGTYASKHLEDN 369

Query: 382 VDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQS 437
           V E VK  RL   + LQ +L  +    N  C+G+  EVL+E   K  + +L GR+   + 
Sbjct: 370 VPEEVKVRRLNEIIALQNRLSAES---NQRCIGKTYEVLVEGVSKRSRDQLFGRTEQNRV 426

Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGE 466
           VV +   H +GD + VR+T+   +TL GE
Sbjct: 427 VVFDRGTHRVGDFVNVRVTEASSATLKGE 455


>gi|126696829|ref|YP_001091715.1| 2-methylthioadenine synthetase [Prochlorococcus marinus str. MIT
           9301]
 gi|229890597|sp|A3PED9|MIAB_PROM0 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|126543872|gb|ABO18114.1| 2-methylthioadenine synthetase [Prochlorococcus marinus str. MIT
           9301]
          Length = 464

 Score =  298 bits (764), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 179/455 (39%), Positives = 268/455 (58%), Gaps = 27/455 (5%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           +++ ++GCQMN  DS RM       GY R ++  +ADL++ NTC IR+ A +KVYSFLGR
Sbjct: 21  YWITTFGCQMNKADSERMAGTLEKMGYTRADNELNADLVLYNTCTIRDNAEQKVYSFLGR 80

Query: 87  --IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
              R  K  R+K      +VVAGC+AQ EGE +LRR P +++V+GPQ    L  LL +  
Sbjct: 81  QAKRKHKTPRLK------LVVAGCLAQQEGESLLRRVPELDLVMGPQHVNNLENLLGKVD 134

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G +VV T    E+ F    I      R+  +  ++ I  GC++ C++CVVP  RG E S
Sbjct: 135 LGNQVVAT----EETFISEDITSA--RRESSICGWVNIIYGCNERCSYCVVPSVRGKEQS 188

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG------EKCTFSDLLYSLSEIK 258
           R  + +  E +KL D+   EITLLGQN++A+ G+ L G      ++ T +DLLY + ++K
Sbjct: 189 RYPNAIKSEIQKLADDNFKEITLLGQNIDAY-GRDLPGTTKEGRKENTLTDLLYYIHDVK 247

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           G+ R+R+ TSHPR  S  LI+A  +LD +  + H+P QSG+D ILK M+R ++  +Y+ I
Sbjct: 248 GIRRIRFATSHPRYFSKRLIQACYELDKVCEHFHIPFQSGNDEILKQMSRGYSIKKYKNI 307

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           I+ IRS+ PD +I++D IV FPGET+  ++ T+ L+ +IG+ Q  +  YS R  TP +  
Sbjct: 308 IENIRSLMPDASITADAIVAFPGETEKQYQDTLKLISEIGFDQVNTAAYSARPNTPAAVW 367

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQ- 436
             Q+ E VK  RL  +   + +   S N   +  I  VLIE  + K   +++GR+   + 
Sbjct: 368 TNQLSEEVKKARLQEINDLVEKTARSRNQRYIDNIESVLIEGLNPKNSSQIMGRTRTNRL 427

Query: 437 SVVLNSKNHN----IGDIIKVRITDVKISTLYGEL 467
           + V   KN N    +GD I VRI + +  +L GEL
Sbjct: 428 TFVEIPKNINFNFSLGDEINVRINEARPFSLTGEL 462


>gi|225010050|ref|ZP_03700522.1| RNA modification enzyme, MiaB family [Flavobacteria bacterium
           MS024-3C]
 gi|225005529|gb|EEG43479.1| RNA modification enzyme, MiaB family [Flavobacteria bacterium
           MS024-3C]
          Length = 482

 Score =  298 bits (764), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 170/459 (37%), Positives = 270/459 (58%), Gaps = 22/459 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ +++SYGC MN  DS  +  +  ++GY     +++ADL+++NTC IR+KA + V   L
Sbjct: 24  KKLYIESYGCAMNFSDSEVVASILAAEGYHTTEVLEEADLVLINTCSIRDKAEQTVRKRL 83

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            + + +K S  +    + V V GC+A+    ++L  + IV++VVGP  Y  +P LL+   
Sbjct: 84  EKFQAVKRSNPQ----MKVGVLGCMAERLKTKLLEEAKIVDMVVGPDAYKDIPNLLKEVE 139

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G+  V+   S E+ +  ++ V    N+   +TAF++I  GCD  CTFCVVP+TRG E S
Sbjct: 140 AGRNAVNVILSKEETYGDIAPVRLASNK---ITAFVSITRGCDNMCTFCVVPFTRGRERS 196

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNA--WRGKGL--DGEKCT---------FSDLL 251
           R    ++ E + L D G  E+TLLGQNV++  W G GL  D  K T         FS LL
Sbjct: 197 RDPLSILTEIQDLWDKGYKEMTLLGQNVDSYLWYGGGLKKDFNKATQMAQATAVNFSQLL 256

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
             ++     +R+R++TS+P+DM+  +++       +  ++HLPVQSGS+RILK+MNR+HT
Sbjct: 257 EKVALKFPEMRIRFSTSNPQDMTLDVVRTMAAHSNICKHIHLPVQSGSNRILKAMNRQHT 316

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
             EY  +ID IR++ PD AIS D I+GFP ET++D + T+ L++ + Y   + + YS R 
Sbjct: 317 REEYMALIDNIRAIIPDCAISQDMIIGFPNETEEDHKDTLSLMEYVKYDFGYMYSYSDRP 376

Query: 372 GT-PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LV 429
           GT  G N+ + + E +K++RL  +    R+         VG+I  VL+E   K+  K L+
Sbjct: 377 GTAAGKNLADNIPETLKSKRLAEVIAVQRKHAAMHTQNRVGKIETVLVEGVSKKSEKDLM 436

Query: 430 GRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           GR+ +   VV   + + IGD++ V+ITD    TL G+ +
Sbjct: 437 GRNNYNAVVVFPRETYKIGDLVAVKITDCTSGTLLGKAI 475


>gi|212704632|ref|ZP_03312760.1| hypothetical protein DESPIG_02695 [Desulfovibrio piger ATCC 29098]
 gi|212672031|gb|EEB32514.1| hypothetical protein DESPIG_02695 [Desulfovibrio piger ATCC 29098]
          Length = 448

 Score =  298 bits (764), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 173/463 (37%), Positives = 262/463 (56%), Gaps = 39/463 (8%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           ++   F + ++GCQMNV+DS  +     ++G+     +++A ++V+NTC +REK  +KV 
Sbjct: 1   MIDNSFHIITFGCQMNVHDSQWLARALEARGFCEA-PLEEARVVVVNTCSVREKPEQKVM 59

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S LGRIR +  +  +    +LV V GCVAQ  GE++  R   V +V G       P+ +E
Sbjct: 60  STLGRIRQVTGNSPR----VLVAVTGCVAQQLGEKLFSRQ--VRLVAGSDGISGAPQAIE 113

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVD---------GGYNRKRGVTAFLTIQEGCDKFCTF 192
           R             +++   RLS++D          G +       F+ I +GCD FC +
Sbjct: 114 RL------------LDEPALRLSLLDFTSHYVEREPGADTPSAPVGFVNIMQGCDNFCAY 161

Query: 193 CVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLY 252
           C+VPYTRG + SR    ++DE R L+D G  EITLLGQNVNA+ G+   G+  +F+ LL 
Sbjct: 162 CIVPYTRGRQKSRLTPAILDECRHLLDRGAHEITLLGQNVNAF-GRDTHGDGVSFATLLE 220

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
            ++ + GL RLRY T HP+DM    ++A  D+  L P LHLP+Q+GSD +LK M R++ +
Sbjct: 221 KVAALPGLKRLRYVTPHPKDMGPEDVRAFADIPQLCPRLHLPLQAGSDAVLKRMGRKYDS 280

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
             Y +++  +R  RPDIA+S+D IVGFPGET++DF AT++L+    +  +FSF YS R G
Sbjct: 281 VRYLELVASLRDARPDIALSTDLIVGFPGETEEDFAATLELMRASDFMSSFSFCYSDRPG 340

Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG------ 426
           T  S  L+++  +V+ +RLL LQ    E    + DA VGQ  EVL+E   + +       
Sbjct: 341 TRASRFLDKIAPDVQQDRLLRLQALQEELSQRWLDARVGQECEVLLENASRREATADDSL 400

Query: 427 -KLVGRSPW--LQSVVLNSKNHNIGDIIKVRITDVKISTLYGE 466
               GR  +  L  V L + +H  G ++  RI + K  +L  E
Sbjct: 401 QSWQGRDIYGALVHVPLPAGDHT-GRLVNARIVEAKKHSLVAE 442


>gi|33862596|ref|NP_894156.1| (dimethylallyl)adenosine tRNA methylthiotransferase
           [Prochlorococcus marinus str. MIT 9313]
 gi|81577894|sp|Q7V8L8|MIAB_PROMM RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|33634512|emb|CAE20498.1| conserved hypothetical protein [Prochlorococcus marinus str. MIT
           9313]
          Length = 480

 Score =  298 bits (764), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 174/473 (36%), Positives = 274/473 (57%), Gaps = 23/473 (4%)

Query: 5   IKLIGVAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADL 64
           + L+  + + S           F+++++GCQMN  DS RM  +  + GY    +  +ADL
Sbjct: 9   LALVATSAIASNPATTAQHQGSFWIQTFGCQMNKADSERMAGILEAMGYHEAPAELEADL 68

Query: 65  IVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIV 124
           ++ NTC IR+ A +KVYS+LGR    +  R +    L +VVAGCVAQ EGE +LRR P +
Sbjct: 69  VLYNTCTIRDNAEQKVYSYLGR----QARRKRTHPHLKLVVAGCVAQQEGEALLRRIPEL 124

Query: 125 NVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQE 184
           ++V+GPQ   RL  LL +   G++VV TD +     E L+       R   + A++ +  
Sbjct: 125 DLVMGPQHANRLEALLTQVDNGQQVVATDDN--HILEDLTTA----RRDSTICAWVNVIY 178

Query: 185 GCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG-- 242
           GC++ CT+CVVP  RG E SRS   +  E   L   G  EITLLGQN++A+ G+ L G  
Sbjct: 179 GCNERCTYCVVPSVRGKEQSRSPEAIRLEIEGLAARGFREITLLGQNIDAY-GRDLPGIT 237

Query: 243 ----EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
                + T +DLL+ + +++G+ R+R+ TSHPR  ++ LI+A  DL  +  + H+P QSG
Sbjct: 238 PEGRRQNTLTDLLHHIHDVEGIERIRFATSHPRYFTERLIEACFDLPKVCEHFHIPFQSG 297

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
            + +LK+M R +T   YR+I++RIR + PD AIS+D IV FPGETD  F+ T++L++++G
Sbjct: 298 DNDVLKAMARGYTVERYRRIVNRIRELMPDAAISTDVIVAFPGETDAQFQNTLNLLEEVG 357

Query: 359 YAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI 418
           + Q  +  YSPR  TP +    Q+ E VK ERL  L   +    +  N    G++ +VL 
Sbjct: 358 FDQVNTAAYSPRPNTPAATWSNQLPEAVKVERLKQLNALVERIALQRNSRYSGKVEQVLA 417

Query: 419 EK-HGKEKGKLVGRSPWLQSVVLNSKN-----HNIGDIIKVRITDVKISTLYG 465
           E  + K+  +L+GR+   +     ++      ++ GD++ ++I  V+  +L G
Sbjct: 418 EGINPKKPQQLMGRTRTNRLTFFATEGPQGCRYSPGDLVDIQINSVRAFSLSG 470


>gi|188586121|ref|YP_001917666.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Natranaerobius
           thermophilus JW/NM-WN-LF]
 gi|229890572|sp|B2A3X6|MIAB_NATTJ RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|179350808|gb|ACB85078.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Natranaerobius
           thermophilus JW/NM-WN-LF]
          Length = 451

 Score =  298 bits (764), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 166/449 (36%), Positives = 266/449 (59%), Gaps = 19/449 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++F+  ++GCQMN +DS  +  M    G+E+  S ++ADL+++NTC +REKA +KV   +
Sbjct: 10  KKFYTLTFGCQMNEHDSEVLAGMLDQMGFEKAASEEEADLLIINTCAVREKAEQKVLGKI 69

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAE--GEEILRRSPIVNVVVGPQTYYRLPELLER 142
           G +R LK ++     D+ + + GC+ Q E    +I R    V+++ G     R P+LLE 
Sbjct: 70  GTLRYLKENK----PDMKIAIGGCMVQQEHVANKIYRDFTHVDIIFGTHNINRFPQLLEH 125

Query: 143 A-RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
             + GKRV +        FE L      + R+  + A++ I  GCD +C +C+VPY RG 
Sbjct: 126 VMQKGKRVKEISQDDSQVFENLP-----HKREDSIKAWVVISYGCDNYCKYCIVPYVRGQ 180

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           + SR    +  E  KL   G+ EITLLGQNVN++ GK LD +  +F++LL  LS+I+G+ 
Sbjct: 181 QRSRDPEHIKYEVEKLAKEGLKEITLLGQNVNSY-GKDLD-QNISFTNLLEELSKIEGIE 238

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+ TSHP+D    LI    + + +  + HLPVQ+GS++ILK M R +T   Y  I++ 
Sbjct: 239 RIRFMTSHPKDFDKELITTLKESNKICEHFHLPVQAGSNKILKKMGRGYTREHYVDIVND 298

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           IR+  P+ +I++D IVG+PGE ++DF+ T+DLV  + +  AF+F YS R GTP + M EQ
Sbjct: 299 IRAELPNASITTDIIVGYPGEEEEDFQETLDLVQNVKFDSAFTFVYSKRSGTPAAEMAEQ 358

Query: 382 VDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSV 438
           VDE  K    ++L+ +Q+++ EQ+    +  V +I+   + K+ ++   L GR+   + V
Sbjct: 359 VDEQTKKGRIQKLISVQQEISEQRNKDLENTVQRILVEGVSKNNED--MLSGRTRTDKLV 416

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGEL 467
                   IG+++ V+IT      LYGE+
Sbjct: 417 HFPGDKELIGELVDVKITRGHSWNLYGEI 445


>gi|332881524|ref|ZP_08449173.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Capnocytophaga sp. oral
           taxon 329 str. F0087]
 gi|332680522|gb|EGJ53470.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Capnocytophaga sp. oral
           taxon 329 str. F0087]
          Length = 441

 Score =  298 bits (764), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 165/448 (36%), Positives = 265/448 (59%), Gaps = 14/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F+++YGCQMNV DS  +  +    GYE   ++D+AD + LNTC +R+ A +K+ + L
Sbjct: 2   KKLFIETYGCQMNVADSEVVASVMRMAGYETCETLDEADAVFLNTCSVRDNAEQKIINRL 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             +  L+    ++G  L++ V GC+A+   EE++     V+VV GP  Y  LP+L+ +  
Sbjct: 62  EALHALR----RKGRHLIIGVLGCMAERVKEELIENHH-VDVVAGPDAYLSLPDLIAQVE 116

Query: 145 FGKRVVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            G + ++ + SV + ++ +    V G +     ++ F++I  GC+ FC +C+VPYTRG E
Sbjct: 117 LGHKAINVELSVTETYKDVIPQRVCGSH-----ISGFVSIMRGCNNFCHYCIVPYTRGRE 171

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR +  +++E R L   G  E+TLLGQNVN++  +G DG+  +F +LL  ++     +R
Sbjct: 172 RSRDVESILNEVRDLKKRGYKEVTLLGQNVNSYLHEGADGKTVSFPELLRLVAHEADGMR 231

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP+DMSD  ++   +   +  ++HLPVQSGS+RILK MNR++T   Y   +  I
Sbjct: 232 VRFTTSHPKDMSDDTLRVIAEEPNVCRHIHLPVQSGSNRILKLMNRKYTREWYLDRVAAI 291

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML-EQ 381
           R + PD  +S+D   G+  ET++D + ++ L+ +  Y  AF FKYS R GT  S  L + 
Sbjct: 292 RRIVPDCGLSTDIFSGYCSETEEDHQMSLSLMRECAYDSAFMFKYSERPGTYASKHLPDD 351

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVL 440
           V E+VK  RL  L     E     N  C G++ EVL+E   K  K +L GR+   + VV 
Sbjct: 352 VSEDVKVRRLNELIALQNELSAESNRRCEGRVYEVLVEGVSKRSKEQLFGRTEQNKVVVF 411

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
           +   +++GD +KVR+     +TL GE+V
Sbjct: 412 DRGKYHVGDFVKVRVNGSSSATLKGEVV 439


>gi|315444879|ref|YP_004077758.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Mycobacterium sp. Spyr1]
 gi|315263182|gb|ADT99923.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Mycobacterium sp. Spyr1]
          Length = 516

 Score =  298 bits (764), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 163/416 (39%), Positives = 250/416 (60%), Gaps = 18/416 (4%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
            P+ F V++YGCQMNV+DS R+  +    GY+R  +  DAD++V NTC +RE A  K+Y 
Sbjct: 23  APRTFEVRTYGCQMNVHDSERLSGLLEQAGYQRAGAGVDADIVVFNTCAVRENADNKLYG 82

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            L  +   K +  +    + + V GC+AQ + + +LR++P V+VV G      LP LL+R
Sbjct: 83  NLSHLAPRKQADPQ----MQIAVGGCLAQKDRDAVLRKAPWVDVVFGTHNIGSLPTLLDR 138

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           AR   RV   + + E   E  S +    +R+    A+++I  GC+  CTFC+VP  RG E
Sbjct: 139 ARH-NRVAQVEIA-ESLREFPSALPA--SRESAYAAWVSISVGCNNTCTFCIVPSLRGKE 194

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG----EKCTFSDLLYSLSEIK 258
           + R    V+ E + L+D GV EITLLGQNVNA+     D     ++  F+ LL +   I 
Sbjct: 195 VDRRPGDVLAEVQALVDQGVLEITLLGQNVNAYGVSFADPTEARDRGAFAKLLRACGRID 254

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           GL R+R+T+ HP + +D +I+A      + P LH+P+QSGSDRIL++M R + A  Y  I
Sbjct: 255 GLERVRFTSPHPAEFTDDVIEAMAQTSNVCPTLHMPLQSGSDRILRAMRRSYRADRYLGI 314

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           IDR+R+  P  AI++D IVGFPGET++DF+AT+D+V+   ++ AF+F+YS R GTP + +
Sbjct: 315 IDRVRTAIPHAAITTDLIVGFPGETEEDFQATLDVVEAARFSSAFTFQYSKRPGTPAAEL 374

Query: 379 LEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR 431
             Q+ + V +E   RL+ LQ+++  ++   N A +G+ +E+L+      K     R
Sbjct: 375 EGQIPKAVVSERYQRLIELQERISWEE---NRAQIGREVELLVATGEGRKDAATAR 427


>gi|326384493|ref|ZP_08206173.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Gordonia
           neofelifaecis NRRL B-59395]
 gi|326196838|gb|EGD54032.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Gordonia
           neofelifaecis NRRL B-59395]
          Length = 521

 Score =  298 bits (763), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 160/417 (38%), Positives = 242/417 (58%), Gaps = 22/417 (5%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           + V+++GCQMNV+DS R+  +    GY      DDADL+V NTC +RE A  K+Y  L  
Sbjct: 21  YSVRTFGCQMNVHDSERIAGLLEDAGYVAAVDGDDADLVVFNTCAVRENADNKLYGNLSH 80

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           +  +K  R      + + V GC+AQ + + + +R+P V+VV G      LP LLERAR  
Sbjct: 81  LAPVKADRPG----MQIAVGGCLAQKDKDTVRKRAPWVDVVFGTHNIGSLPVLLERARHN 136

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
               +    + D  ER         R    + ++++  GC+  CTFC+VP  RG E+ R 
Sbjct: 137 D---EAQVEILDSLERFPSTLPA-RRDSAYSGWVSVSVGCNNTCTFCIVPSLRGKEVDRR 192

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE----KCTFSDLLYSLSEIKGLVR 262
              V+ E + L+D GV E+TLLGQNVNA+     D E    +  F+DLL +   I+GL R
Sbjct: 193 PGDVLAEVQALVDQGVLEVTLLGQNVNAYGQSFADPETPRNRGAFADLLRACGTIEGLER 252

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+T+ HP + +D +I A  +   + P LH+P+QSGSDR+L++M R +   ++  I+DR+
Sbjct: 253 VRFTSPHPAEFTDDVIAAMAETPNICPQLHMPLQSGSDRVLRAMRRSYRRTKFLGILDRV 312

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R   P  AI++D IVGFPGET++DF  T+D+V+K  ++ AF+F+YSPR GTP + M +QV
Sbjct: 313 REAMPHAAITTDIIVGFPGETEEDFAETLDVVEKARFSSAFTFQYSPRPGTPAATMPDQV 372

Query: 383 DENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLI----EKHGKEKGKLVGRS 432
              V  E   RL+ LQ+++    +  N A VG   E+L+     +     G++ GR+
Sbjct: 373 PPEVVTERYQRLIALQERI---CLEGNTALVGTEAELLVVADEGRKSSSTGRMTGRA 426


>gi|68536191|ref|YP_250896.1| hypothetical protein jk1114 [Corynebacterium jeikeium K411]
 gi|123775708|sp|Q4JV79|MIAB_CORJK RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|68263790|emb|CAI37278.1| miaB [Corynebacterium jeikeium K411]
          Length = 512

 Score =  298 bits (763), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 159/443 (35%), Positives = 263/443 (59%), Gaps = 22/443 (4%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           + V+++GCQMNV+DS R+  +    GY   +     D++V NTC +RE A +++Y  LG+
Sbjct: 19  YEVRTFGCQMNVHDSERLSGLLEDSGYVPASEGVTPDVVVFNTCAVRENADKRLYGTLGQ 78

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           ++ +K+    E   + + V GC+AQ + + ++ ++P V+VV G      LP LLER+   
Sbjct: 79  MKAIKD----EHPGMQIAVGGCMAQKDKQTVVDKAPWVDVVFGTHNLGSLPTLLERSAHN 134

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
            +    +  + D  E    V     R+     ++++  GC+  CTFC+VP  RG E  R 
Sbjct: 135 HKA---EVEIFDALEEFPSVLPA-KRESAYAGWVSVSVGCNNTCTFCIVPSLRGKEQDRR 190

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAW----RGKGLDGEKCTFSDLLYSLSEIKGLVR 262
             +++ E + L++ GV E+TLLGQNVNA+      + L+ ++  FS LL +  EI+GL R
Sbjct: 191 PGEILAEVKALVEQGVSEVTLLGQNVNAYGVNFADETLERDRTAFSKLLRACGEIEGLER 250

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LR+T+ HP + +D +I A  +   + P LH+P+QSGSD++LK M R + + ++  I+D++
Sbjct: 251 LRFTSPHPAEFTDDVIDAMAETPAVCPQLHMPLQSGSDKVLKDMKRSYRSKKFLAILDKV 310

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R   P  AI++D IVGFPGET++DF+AT+D+V+K  ++ AF+F+YSPR GTP + M  QV
Sbjct: 311 RERIPHAAITTDIIVGFPGETEEDFQATLDVVEKARFSSAFTFQYSPRPGTPAAEMENQV 370

Query: 383 DENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV 439
            + V   + ERLL LQ+++ E++   N   +G   E+L++  G++  +   RS   +   
Sbjct: 371 PKAVVQDRYERLLALQERISEEE---NRKLIGTTQELLVQADGRKNDRTQRRSGRSRDGR 427

Query: 440 L----NSKNHNIGDIIKVRITDV 458
           L       +   GD+++V ITD 
Sbjct: 428 LVHFTPEGDVRAGDVVEVVITDA 450


>gi|303246488|ref|ZP_07332767.1| RNA modification enzyme, MiaB family [Desulfovibrio fructosovorans
           JJ]
 gi|302492198|gb|EFL52073.1| RNA modification enzyme, MiaB family [Desulfovibrio fructosovorans
           JJ]
          Length = 446

 Score =  298 bits (763), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 180/451 (39%), Positives = 252/451 (55%), Gaps = 22/451 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +F + + GCQMNV D   +       G+      ++A+L +L TC +REK  +KV S LG
Sbjct: 2   KFHITTMGCQMNVGDGDWLTRSLIGLGFTPAPE-EEAELFILFTCSVREKPEQKVASELG 60

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER--A 143
           RI +    R ++  +  V V GCVAQ  G  + RR P+V +V G       P+ L R  A
Sbjct: 61  RIAD----RHRDNPNAFVAVGGCVAQQFGTALWRRFPMVRLVFGSDGIAGAPQALSRLAA 116

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             G R+   D++ E   ER           R   AF++I +GCD FC +C+VP+ RG + 
Sbjct: 117 EPGLRLSLLDFT-ETYPERDQSWPEDTVPPR---AFVSIMQGCDNFCAYCIVPFVRGRQK 172

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD--GEKCTFSDLLYSLSEIKGLV 261
           SR L  VV E   L   G  EITLLGQNVN++   GLD  G+  +F+ LL +++ I G+ 
Sbjct: 173 SRGLPAVVAECEALAGRGAREITLLGQNVNSY---GLDASGDGTSFARLLDAVATIPGIA 229

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHP+D+SD ++    DL  L P LHLPVQSGSD +L  M RR+    Y +++D+
Sbjct: 230 RIRFTTSHPKDLSDDVVARFADLPELCPALHLPVQSGSDAVLTRMGRRYDRAAYLRLVDK 289

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R  RP IA+++D IVGFPGETDDDFR T+DLV ++G+   FSF Y  R GT    M  +
Sbjct: 290 LRRARPGIALTTDLIVGFPGETDDDFRRTLDLVREVGFDSGFSFMYCDRPGTVSERMEPK 349

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG----KLVGRSPW--L 435
           V + VK+ RL  LQ  L E+  +   A VG+  E+LIE   +          GR P   +
Sbjct: 350 VAQEVKSARLAELQALLDERLAAALAAQVGRTTEILIEGASRRDSPTGPSWRGRDPGGRI 409

Query: 436 QSVVLNSKNHNIGDIIKVRITDVKISTLYGE 466
            ++ L       G I++ RI   K  +L GE
Sbjct: 410 VNMALPGVAEAAGTIVRARIRQAKKHSLIGE 440


>gi|260061724|ref|YP_003194804.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Robiginitalea
           biformata HTCC2501]
 gi|88785856|gb|EAR17025.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Robiginitalea biformata
           HTCC2501]
          Length = 481

 Score =  298 bits (763), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 180/456 (39%), Positives = 255/456 (55%), Gaps = 22/456 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ +++SYGCQMN  DS  +  +   +G+   + +++ADLI++NTC IREKA + V   L
Sbjct: 24  RKLYIESYGCQMNFSDSEIVASILGQEGFNTTSRLEEADLILVNTCSIREKAEQTVRKRL 83

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
                LK    K    + V V GC+A+    + L    IV++VVGP  Y  LP L+    
Sbjct: 84  VHFNGLK----KSNPGVKVGVLGCMAERLKSQFLEEEKIVDMVVGPDAYKDLPNLVREVD 139

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G+  V+   S E+ +  +S V  G N   GVTAF++I  GCD  CTFCVVP+TRG E S
Sbjct: 140 SGQNAVNVILSKEETYADVSPVRLGSN---GVTAFVSITRGCDNMCTFCVVPFTRGRERS 196

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNA--WRGKGL--DGEKCT---------FSDLL 251
           R    ++ E   L  NG  E+TLLGQNV++  W G GL  D +K +         F+ LL
Sbjct: 197 RDPQSILREVGDLWANGYKEVTLLGQNVDSYLWYGGGLKKDFDKASPMQQATAVNFAGLL 256

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
              +     +R R++TS+P+DM+  +I+     D +  Y+HLPVQSGSDRILK+MNR HT
Sbjct: 257 EMAATAYPGMRFRFSTSNPQDMTLDVIETMARFDNICNYIHLPVQSGSDRILKAMNRLHT 316

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
             EY  +ID IR + PD  IS D I GFP ET++D + T+ L+D + Y   F F YS R 
Sbjct: 317 REEYFGLIDNIRRLIPDCGISQDMIAGFPTETEEDHQQTLSLMDYVKYDFGFMFAYSERP 376

Query: 372 GT-PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLV 429
           GT     M + V + VK  RL  +  K +   +  N A +G++ EVLIE    K     +
Sbjct: 377 GTLAARKMADDVPDAVKKRRLREIIDKQQAHSLERNQAHIGRVEEVLIEGPSRKSDAHWM 436

Query: 430 GRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYG 465
           GR+     VV   +N+ +G+ + VRI D   +TL G
Sbjct: 437 GRNTQNTVVVFPKENYRVGEFVNVRIEDCTSATLLG 472


>gi|145224548|ref|YP_001135226.1| RNA modification protein [Mycobacterium gilvum PYR-GCK]
 gi|229890565|sp|A4TCM9|MIAB_MYCGI RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|145217034|gb|ABP46438.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Mycobacterium gilvum
           PYR-GCK]
          Length = 512

 Score =  298 bits (763), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 161/403 (39%), Positives = 248/403 (61%), Gaps = 18/403 (4%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
            P+ F V++YGCQMNV+DS R+  +    GY+R  +  DAD++V NTC +RE A  K+Y 
Sbjct: 19  APRTFEVRTYGCQMNVHDSERLSGLLEQAGYQRAGAGVDADIVVFNTCAVRENADNKLYG 78

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            L  +   K +  +    + + V GC+AQ + + +LR++P V+VV G      LP LL+R
Sbjct: 79  NLSHLAPRKQADPQ----MQIAVGGCLAQKDRDAVLRKAPWVDVVFGTHNIGSLPTLLDR 134

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           AR   RV   + + E   E  S +    +R+    A+++I  GC+  CTFC+VP  RG E
Sbjct: 135 ARH-NRVAQVEIA-ESLREFPSALPA--SRESAYAAWVSISVGCNNTCTFCIVPSLRGKE 190

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG----EKCTFSDLLYSLSEIK 258
           + R    V+ E + L+D GV EITLLGQNVNA+     D     ++  F+ LL +   I 
Sbjct: 191 VDRRPGDVLAEVQALVDQGVLEITLLGQNVNAYGVSFADPTEARDRGAFAKLLRACGRID 250

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           GL R+R+T+ HP + +D +I+A      + P LH+P+QSGSDRIL++M R + A  Y  I
Sbjct: 251 GLERVRFTSPHPAEFTDDVIEAMAQTSNVCPTLHMPLQSGSDRILRAMRRSYRADRYLGI 310

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           IDR+R+  P  AI++D IVGFPGET++DF+AT+D+V+   ++ AF+F+YS R GTP + +
Sbjct: 311 IDRVRTAIPHAAITTDLIVGFPGETEEDFQATLDVVEAARFSSAFTFQYSKRPGTPAAEL 370

Query: 379 LEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLI 418
             Q+ + V +E   RL+ LQ+++  ++   N A +G+ +E+L+
Sbjct: 371 EGQIPKAVVSERYQRLIELQERISWEE---NRAQIGREVELLV 410


>gi|330997206|ref|ZP_08321059.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Paraprevotella
           xylaniphila YIT 11841]
 gi|329571001|gb|EGG52708.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Paraprevotella
           xylaniphila YIT 11841]
          Length = 441

 Score =  298 bits (763), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 167/448 (37%), Positives = 263/448 (58%), Gaps = 14/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F+++YGCQMNV DS  +  +    GYE   ++D+AD + LNTC +R+ A +K+ + L
Sbjct: 2   KKLFIETYGCQMNVADSEVVASVMRMAGYETCETLDEADAVFLNTCSVRDNAEQKIINRL 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             +  L+    ++G  L++ V GC+A+   EE++     V++V GP  Y  LP+L+ +  
Sbjct: 62  EALHALR----RKGRHLVIGVLGCMAERVKEELIENHH-VDLVAGPDAYLSLPDLIAQVE 116

Query: 145 FGKRVVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            G + ++ + SV + +  +    V G +     ++ F++I  GC+ FC +C+VPYTRG E
Sbjct: 117 LGHKAINVELSVTETYRDVIPQRVCGSH-----ISGFVSIMRGCNNFCHYCIVPYTRGRE 171

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR +  +++E R L   G  E+TLLGQNVN++   G DG+  +F  LL  ++     +R
Sbjct: 172 RSRDVESILNEVRDLKKRGYKEVTLLGQNVNSYLHVGGDGKTVSFPQLLRLVAHEADGMR 231

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP+DMSD  ++   +   +  ++HLPVQSGSDRILK MNR++T   Y   +  I
Sbjct: 232 VRFTTSHPKDMSDDTLRVIAEEPNVCRHIHLPVQSGSDRILKLMNRKYTREWYLDRVAAI 291

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML-EQ 381
           R + PD  +S+D   G+  ET++D + ++ L+ +  Y  AF FKYS R GT  S  L + 
Sbjct: 292 RRIVPDCGLSTDIFSGYCSETEEDHQMSLSLMRECAYDSAFMFKYSERPGTYASKHLPDD 351

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVL 440
           V E+VK  RL  L     E     N  C G++ EVL+E   K  K +L GR+   + VV 
Sbjct: 352 VPEDVKVRRLNELIALQNELSAESNRHCEGRVYEVLVEGVSKRSKEQLFGRTEQNKVVVF 411

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
           +   H++GD +KVRI+    +TL GE+V
Sbjct: 412 DRGKHHVGDFVKVRISGSSSATLKGEVV 439


>gi|73662777|ref|YP_301558.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus
           saprophyticus subsp. saprophyticus ATCC 15305]
 gi|123775346|sp|Q49X85|MIAB_STAS1 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|72495292|dbj|BAE18613.1| putative 2-methylthioadenine synthetase [Staphylococcus
           saprophyticus subsp. saprophyticus ATCC 15305]
          Length = 513

 Score =  298 bits (763), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 171/448 (38%), Positives = 265/448 (59%), Gaps = 15/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + F +K+YGCQMN +D+  M  +  + GY     ++ AD+I++NTC IRE A  KV+S +
Sbjct: 67  KTFLIKTYGCQMNAHDTEVMAGILGALGYTPTEDINHADVILINTCAIRENAENKVFSEI 126

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G +++LK    KE  + ++ V GC++Q E    +IL+    V+++ G    +RLPE+LE 
Sbjct: 127 GNLKHLK----KEKPETVIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHRLPEILEE 182

Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           A   K +V   +S E D  E L  V     R+  + A++ I  GCDKFCT+C+VP+TRG 
Sbjct: 183 AYLSKAMVVEVWSKEGDVIENLPKV-----REGNIKAWVNIMYGCDKFCTYCIVPFTRGK 237

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR    ++DE R L   G  EITLLGQNVNA+ GK +DG      DLL  +S+I  + 
Sbjct: 238 ERSRRPEDIIDEVRDLARQGYKEITLLGQNVNAY-GKDIDGLAYGLGDLLEDISKID-IP 295

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHP D +D +I+   +   ++P++HLPVQSG++ +LK M R++T   Y  +++R
Sbjct: 296 RVRFTTSHPWDFTDRMIEVIANGGNIVPHVHLPVQSGNNAVLKIMGRKYTRESYLDLVNR 355

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I++  P++A+++D IVG+P ETD+ F  T+ L D++ +  A+++ YS R GTP + M + 
Sbjct: 356 IKTHIPNVALTTDIIVGYPNETDEQFEETLTLYDEVEFEHAYTYIYSQRDGTPAAKMNDN 415

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440
           V  +VK +RL  L KK+            GQ ++VL E   K+    L G +   + V  
Sbjct: 416 VPLDVKKDRLQQLNKKVACYSERAMQQYEGQTVQVLCEGVSKKDDTVLSGYTSKNKLVNF 475

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
            +    IG I+ V I + K  +L G  +
Sbjct: 476 KAPKSMIGKIVNVYIDEAKQFSLNGTFI 503


>gi|253577928|ref|ZP_04855200.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251850246|gb|EES78204.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 485

 Score =  298 bits (762), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 169/450 (37%), Positives = 270/450 (60%), Gaps = 24/450 (5%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           FF+++ GCQMN   +  +  +    GY  V+  +DAD+++ NTC +RE A  K+Y  LG 
Sbjct: 51  FFIQNAGCQMNSLQTDTVAGIVKRMGYTEVSREEDADVVIYNTCTVRENANLKIYGHLGH 110

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           ++++K    K+  +L +++ GC+ Q     E+I +    V++V G   +++ PEL  R+ 
Sbjct: 111 LKSIK----KKNPELKIILFGCMMQEPEVIEKIHKEYSFVDLVFGTHNFHKFPELFYRS- 165

Query: 145 FGKRVVDTDYSVEDKF-ERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
                ++T+  + D + E   IV+G   +RK      + I  GC+ FC++C+VPY RG E
Sbjct: 166 -----LNTEGQIIDVWKESDEIVEGMPSDRKYSFKTGVNIMFGCNNFCSYCIVPYVRGRE 220

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR    +++E + L+ +GV E+ LLGQNVN++ GK L+    TF+ LL  +  I+GL R
Sbjct: 221 KSREPEAIIEEIKGLVADGVTEVMLLGQNVNSY-GKTLE-HPVTFAQLLKQVEAIEGLKR 278

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+ TSHP+D+SD LI+   +   +  +LHLP+QSGS RILK MNRR+   +Y +++ +I
Sbjct: 279 IRFMTSHPKDLSDELIRTMAESKKVCHHLHLPMQSGSSRILKIMNRRYDKEKYLELVAKI 338

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+  PDI++++D IVGFPGET++DF+ T+D+V+K  +  AF+F YS R GTP + M  QV
Sbjct: 339 RNAVPDISLTTDIIVGFPGETEEDFQDTLDVVEKCDFDSAFTFIYSKRSGTPAAKMENQV 398

Query: 383 DENV---KAERLLCL-QKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSV 438
            E+V   + +RLL L Q+K R+    F     G + E+L+E+  +EKG   GR+ +   V
Sbjct: 399 PEDVVKDRFDRLLALVQEKGRKASSRFE----GTVQEILVEEESREKGIFTGRTEYNLLV 454

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468
                   IG  +KV++   K    +G L 
Sbjct: 455 HFPGCQDLIGKYVKVKLDTCKGFYYFGSLA 484


>gi|240171189|ref|ZP_04749848.1| hypothetical protein MkanA1_17891 [Mycobacterium kansasii ATCC
           12478]
          Length = 532

 Score =  298 bits (762), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 169/447 (37%), Positives = 263/447 (58%), Gaps = 29/447 (6%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERV---NSMDDADLIVLNTCHIREKAAEKVYSF 83
           + V++YGCQMNV+DS R+  +  + GY R    +   DAD++V NTC +RE A  K+Y  
Sbjct: 26  YQVRTYGCQMNVHDSERLAGLLEAAGYRRAADGSDFGDADVVVFNTCAVRENADNKLYGN 85

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           L  +      R +   D+ + V GC+AQ + + +LRR+P V+VV G      LP LL+RA
Sbjct: 86  LSHL----APRKRTNPDMQIAVGGCLAQKDRDVVLRRAPWVDVVFGTHNIGSLPTLLDRA 141

Query: 144 RFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           R  K   V+   +++     L        R+    A+++I  GC+  CTFC+VP  RG E
Sbjct: 142 RHNKVAQVEIAEALQQFPSSLPSA-----RESAYAAWVSISVGCNNSCTFCIVPSLRGKE 196

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW----RGKGLDGEKCTFSDLLYSLSEIK 258
           I RS + V+ E + L+D GV EITLLGQNVNA+        L   +  F++LL +   I 
Sbjct: 197 IDRSPADVLAEVQSLVDTGVLEITLLGQNVNAYGVSFADPALPRNRGAFAELLRACGRIP 256

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           GL R+R+T+ HP + +D +I+A      + P LH+P+QSGSD +L++M R + A  Y  I
Sbjct: 257 GLERVRFTSPHPAEFTDDVIEAMAQTPNVCPALHMPLQSGSDPVLRAMRRSYRADRYLGI 316

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           I+R+R+  P  AI++D IVGFPGET++DF AT+D+V +  +A AF+F+YS R GTP ++ 
Sbjct: 317 IERVRAAMPHAAITTDLIVGFPGETEEDFAATLDVVRQARFAAAFTFQYSKRPGTPAADF 376

Query: 379 LEQVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIE----KHGKEKGKLVGR 431
            EQ+ +++   + ERL+ LQ+++    +  N   VGQ +EVL+     +      ++ GR
Sbjct: 377 DEQLPKDIVRQRYERLIELQEQI---SLEGNRELVGQSVEVLVATGEGRKDSRTSRMSGR 433

Query: 432 SPWLQSVVLNSKNHNI--GDIIKVRIT 456
           +   + V   + + ++  GD+I  +IT
Sbjct: 434 ARDGRLVHFRAGDQHVRPGDLITTQIT 460


>gi|123969036|ref|YP_001009894.1| 2-methylthioadenine synthetase [Prochlorococcus marinus str.
           AS9601]
 gi|229890604|sp|A2BSM6|MIAB_PROMS RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|123199146|gb|ABM70787.1| 2-methylthioadenine synthetase [Prochlorococcus marinus str.
           AS9601]
          Length = 464

 Score =  298 bits (762), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 174/455 (38%), Positives = 265/455 (58%), Gaps = 23/455 (5%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           +++ ++GCQMN  DS RM       GY R ++  +ADL++ NTC IR+ A +KVYSFLGR
Sbjct: 21  YWITTFGCQMNKADSERMAGTLEKMGYTRADNELNADLVLYNTCTIRDNAEQKVYSFLGR 80

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
               +  R  +   L +VVAGC+AQ EGE +LRR P +++V+GPQ    L  LL +   G
Sbjct: 81  ----QAKRKHKTPSLKLVVAGCLAQQEGESLLRRVPELDLVMGPQHVNNLENLLGKVDLG 136

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
            +V  T    E+ F    I      R+  +  ++ I  GC++ C++CVVP  RG E SR 
Sbjct: 137 NQVAAT----EENFISEDITSA--RRESSICGWVNIIYGCNERCSYCVVPSVRGKEQSRY 190

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG------EKCTFSDLLYSLSEIKGL 260
            + +  E +KL  +   EITLLGQN++A+ G+ L G      ++ T +DLLY + ++KG+
Sbjct: 191 PNAIKSEIQKLAGDNFKEITLLGQNIDAY-GRDLPGTTKEGRKENTLTDLLYYIHDVKGI 249

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+ TSHPR  S  LI+A  +LD +  + H+P QSG+D ILK M+R +T  +Y+ II+
Sbjct: 250 RRIRFATSHPRYFSKRLIQACYELDKVCEHFHIPFQSGNDEILKQMSRGYTIKKYKNIIE 309

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
            IRS+ PD +I++D IV FPGET+  ++ T+ L+ +IG+ Q  +  YSPR  TP +    
Sbjct: 310 NIRSLMPDASITADAIVAFPGETEKQYQDTLKLITEIGFDQVNTAAYSPRPNTPAAVWSN 369

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSVV 439
           Q+ E VK  RL  +   + +   S N   +  I  VLIE  + K   +++GR+   +   
Sbjct: 370 QLSEEVKKARLQEINDLVEKTARSRNKRYINNIESVLIEGLNPKNSSQIMGRTRTNRLTF 429

Query: 440 LNSK-----NHNIGDIIKVRITDVKISTLYGELVV 469
           +        N ++GD I VRI + +  +L GEL +
Sbjct: 430 VEIPKNIDFNFSLGDEIDVRINETRPFSLTGELYL 464


>gi|237716928|ref|ZP_04547409.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262405697|ref|ZP_06082247.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacteroides sp. 2_1_22]
 gi|294810637|ref|ZP_06769287.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacteroides xylanisolvens
           SD CC 1b]
 gi|229442911|gb|EEO48702.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262356572|gb|EEZ05662.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacteroides sp. 2_1_22]
 gi|294442179|gb|EFG10996.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacteroides xylanisolvens
           SD CC 1b]
          Length = 457

 Score =  298 bits (762), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 166/449 (36%), Positives = 263/449 (58%), Gaps = 20/449 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F+++YGCQMNV DS  +  +    GY    ++++AD + +NTC IR+ A +K+ + L
Sbjct: 20  KKLFIETYGCQMNVADSEVIASVMQMAGYSVAETLEEADAVFMNTCSIRDNAEQKILNRL 79

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
               +LK    K+   L+V V GC+A+   ++++     V++VVGP  Y  LP+L+    
Sbjct: 80  EFFHSLK----KKKKRLIVGVLGCMAERVKDDLITNHH-VDLVVGPDAYLTLPDLIAAVE 134

Query: 145 FGKRVVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            G++ ++ + S  + +  +  S + G +     ++ F++I  GC+ FCT+C+VPYTRG E
Sbjct: 135 TGEKAINVELSTTETYRDVIPSRICGNH-----ISGFVSIMRGCNNFCTYCIVPYTRGRE 189

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR +  +++E   L+  G  E+TLLGQNVN++R +   GE  TF  LL +++E    VR
Sbjct: 190 RSRDVESILNEVADLVAKGYKEVTLLGQNVNSYRFERPTGEVVTFPMLLRTVAEAAPGVR 249

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP+DMSD  ++    +  +  ++HLPVQSGS RILK MNR++T   Y   +  I
Sbjct: 250 IRFTTSHPKDMSDETLEVIAQVPNVCKHIHLPVQSGSSRILKLMNRKYTREWYLDRVAAI 309

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE-Q 381
           + + PD  +++D   GF  ET+ D   ++ L++  GY  AF FKYS R GT  S  LE  
Sbjct: 310 KRIIPDCGLTTDIFSGFHSETEKDHAMSLSLMEACGYDAAFMFKYSERPGTYASKHLEDN 369

Query: 382 VDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQS 437
           V E VK  RL   + LQ +L  +    N  C+G+  EVL+E   K  + +L GR+   + 
Sbjct: 370 VPEEVKVRRLNEIIALQNRLSAES---NQRCIGKTYEVLVEGVSKRSRDQLFGRTEQNRV 426

Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGE 466
           VV +   H +GD + VR+T+   +TL GE
Sbjct: 427 VVFDRGTHRVGDFVNVRVTEASSATLKGE 455


>gi|313903997|ref|ZP_07837377.1| RNA modification enzyme, MiaB family [Eubacterium cellulosolvens 6]
 gi|313471146|gb|EFR66468.1| RNA modification enzyme, MiaB family [Eubacterium cellulosolvens 6]
          Length = 487

 Score =  298 bits (762), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 176/439 (40%), Positives = 266/439 (60%), Gaps = 26/439 (5%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           F V ++GCQMN  DS ++  +    GY  V++ ++ADL++ NTC +RE A  KVY  LG 
Sbjct: 52  FHVATFGCQMNARDSEKLRGILEEIGYVPVDT-EEADLVLYNTCTVRENANTKVYGRLGG 110

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERA- 143
           + + K    K+   +++ + GC+ Q E   + I  +   VN++ G    Y+L EL+ RA 
Sbjct: 111 LHSWK----KKNPHMMIGLCGCMMQEEHVVKTIREKYRFVNLIFGTHNIYKLAELMSRAL 166

Query: 144 -RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
               + VVD     +   E+L  VD  Y  K GV     I  GC+ FC++C+VPY RG E
Sbjct: 167 DHPDEMVVDIQQKTDLMVEQLP-VDRTYKFKSGVN----IMYGCNNFCSYCIVPYVRGRE 221

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR    ++ E  +L+ +GV E+ LLGQNVN++ GK L+    +F++LL S+++I GL R
Sbjct: 222 KSREPLDILREIEQLVADGVIEVMLLGQNVNSY-GKTLEN-PVSFAELLESVAQIDGLRR 279

Query: 263 LRYTTSHPRDMSDCLIKAHGDL-DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           +R+ TSHP+D+SD LI       D + P+LHLP+QSGS R+LK MNRR+T   Y +++D+
Sbjct: 280 VRFMTSHPKDLSDELIAVMAKYPDKICPHLHLPLQSGSSRLLKHMNRRYTKESYLELVDK 339

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           IR+  PDI++++D IVG+PGET++DF+ T+++V+K+ Y  AF+F YS R GTP + M +Q
Sbjct: 340 IRAAMPDISLTTDIIVGYPGETEEDFQETLEVVEKVRYDSAFTFIYSKRSGTPAAKMDDQ 399

Query: 382 VDENVKAER----LLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQ 436
           V E+V  +R    LL +Q   REQ   F     GQ+ EVL+E  + ++ G + GR     
Sbjct: 400 VPEDVVKDRFNRLLLLVQNIGREQTARFE----GQVKEVLVEHINEQDPGLVTGRMDNNS 455

Query: 437 SVVLNSKNHNIGDIIKVRI 455
            V        IG I+KV++
Sbjct: 456 VVHFPGDASLIGQIVKVKL 474


>gi|284050979|ref|ZP_06381189.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Arthrospira
           platensis str. Paraca]
          Length = 452

 Score =  298 bits (762), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 174/455 (38%), Positives = 272/455 (59%), Gaps = 23/455 (5%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+ + + ++GCQMN  DS RM  +    G   V   + AD+++ NTC IR+ A +KVYS+
Sbjct: 5   PRHYHITTFGCQMNKADSERMAGILDEMGLTFVEDPNQADIVLYNTCTIRDNAEQKVYSY 64

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR    +  R +E  +L ++VAGCVAQ EGE +LRR P +++V+GPQ   RL +LLE+ 
Sbjct: 65  LGR----QAKRKQENPNLTLIVAGCVAQQEGEALLRRVPELDLVMGPQHANRLQDLLEQV 120

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKR--GVTAFLTIQEGCDKFCTFCVVPYTRGI 201
             G +VV T        E ++IV+     +R   +TA++ +  GC++ CT+CVVP  RG 
Sbjct: 121 FEGSQVVAT--------EPINIVEDITKPRRDSNITAWVNVIYGCNERCTYCVVPNVRGT 172

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG------EKCTFSDLLYSLS 255
           E SR+   +  E  +L   G  E+TLLGQN++A+ G+ L G       + T +DLLY + 
Sbjct: 173 EQSRTPEAIRAEMEELARAGYKEVTLLGQNIDAY-GRDLPGSTPDGRHQHTLTDLLYYVH 231

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
           +I G+ R+R+ TSHPR  ++ LI+A  +L  +  + H+P QSG + +LK+M R +T  +Y
Sbjct: 232 DIPGIERIRFATSHPRYFTERLIRACAELPKVCEHFHIPFQSGDNDVLKAMARGYTHEKY 291

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
           R+II+ IR   PD +IS+D IVGFPGET+  F  T+ LVD IG+    +  YSPR GT  
Sbjct: 292 RRIINTIREYIPDASISADAIVGFPGETEAQFENTLKLVDDIGFDLLNTAAYSPRPGTGA 351

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSPW 434
           +    Q+ E VKA+RL  L + +  + +  +     +I EVL+E  + K+  +++GR+  
Sbjct: 352 ALWENQLSEEVKADRLQRLNRLVNVKAMERSQRYRDRIEEVLVEGTNPKDPSQVMGRTRG 411

Query: 435 LQSVVLNSKNHNI-GDIIKVRITDVKISTLYGELV 468
            +          + G+++KV+I +V+  +L GE +
Sbjct: 412 NRLTFFKGNLAELSGELVKVKIIEVRAFSLTGEPI 446


>gi|310641636|ref|YP_003946394.1| tRNA-i(6)a37 thiotransferase enzyme miab [Paenibacillus polymyxa
           SC2]
 gi|309246586|gb|ADO56153.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Paenibacillus polymyxa
           SC2]
          Length = 517

 Score =  297 bits (761), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 174/447 (38%), Positives = 267/447 (59%), Gaps = 14/447 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + + V ++GCQMN +DS  ++ +    GY+      +AD+I+LNTC IRE A +KV+  L
Sbjct: 74  KHYIVYTFGCQMNEHDSETIKGLLEQMGYQATEDRKEADIILLNTCAIRENAEDKVFGEL 133

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G +++LK     E   LL+ V GC++Q E     I+++   V+++ G    +RLP+L++ 
Sbjct: 134 GHLKHLKT----EKPGLLLGVCGCMSQEENVVNRIMQKHGFVDMIFGTHNIHRLPQLVKE 189

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           A F K +V   +S E       I++    ++ G+ A++ I  GCDKFCT+C+VP+TRG E
Sbjct: 190 ALFSKEMVVEVWSKEG-----DIIENLPKKREGMRAWVNIMYGCDKFCTYCIVPFTRGKE 244

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR    V+ E R L   G  EITLLGQNVNA+ GK L      F DL+  + +I  + R
Sbjct: 245 RSRRPEDVIAEVRDLARQGFKEITLLGQNVNAY-GKDLKDMNYRFGDLMDDMRKI-NIPR 302

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHPRD  D L++  G    L+ ++HLPVQSG+  ILK MNR++T     ++  +I
Sbjct: 303 VRFTTSHPRDFDDHLVEVLGKGGNLVEHIHLPVQSGNTDILKKMNRKYTRERVLELAAKI 362

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           ++  P +++++D IVGFPGETD+ F  T+ LV ++GY  A++F YSPR GTP ++M + V
Sbjct: 363 KAAVPHVSLTTDIIVGFPGETDEQFEDTLSLVREVGYDFAYTFIYSPREGTPAASMEDNV 422

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVLN 441
             +VK ERL  L   + +  + FN    G+++EVL+E   K   K L GR+   + V   
Sbjct: 423 PMSVKKERLRRLNIAVNQNSLRFNSRLRGEVVEVLVEGESKNDSKVLAGRTRSNKLVHFE 482

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                IG  ++V+IT+     + G+LV
Sbjct: 483 GSKDLIGSFVQVKITEPMTFYIKGDLV 509


>gi|170781615|ref|YP_001709947.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Clavibacter
           michiganensis subsp. sepedonicus]
 gi|229890481|sp|B0RGZ1|MIAB_CLAMS RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|169156183|emb|CAQ01325.1| conserved hypothetical protein [Clavibacter michiganensis subsp.
           sepedonicus]
          Length = 530

 Score =  297 bits (761), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 171/446 (38%), Positives = 265/446 (59%), Gaps = 29/446 (6%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+ + V++YGCQMNV+DS R+     + GY      + AD++V+NTC +RE A  K+Y  
Sbjct: 18  PRTYEVRTYGCQMNVHDSERLTGSLEAAGYVSAEGAE-ADIVVINTCAVRENADNKLYGN 76

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LG +  +K  R  EG  + + V GC+AQ +   +L ++P V+VV G      LP LLERA
Sbjct: 77  LGHLAGVK--RRHEG--MQIAVGGCLAQKDRATVLEKAPWVDVVFGTHNMGALPTLLERA 132

Query: 144 RF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           R  G+  ++   S+E     L        R    + +++I  GC+  CTFC+VP  RG E
Sbjct: 133 RHNGEAQLEILESLETFPSTLPT-----KRDEIASGWVSISVGCNNTCTFCIVPALRGKE 187

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLV 261
             R    ++ E + L+D+G  E+TLLGQNVN++   G++ G++  F  LL +   I+GL 
Sbjct: 188 KDRRPGDILAEIQALVDDGAVEVTLLGQNVNSY---GVEFGDRQAFGKLLRAAGAIEGLE 244

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+T+ HP   +D +I A  +   +MP LH+P+QSGSDRILK+M R + +  +  I+DR
Sbjct: 245 RIRFTSPHPAAFTDDVIDAMAETPAVMPQLHMPLQSGSDRILKAMRRSYRSERFLGILDR 304

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R+  PD AI++D IVGFPGET++DF+ T+ +V+   ++ AF+F+YS R GTP + M EQ
Sbjct: 305 VRTRVPDAAITTDIIVGFPGETEEDFQETLRVVEAARFSSAFTFQYSIRPGTPAATMEEQ 364

Query: 382 VDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKH-GKEKG---KLVGRSPW 434
           V  +V  E   RL  LQ+++  ++   N   VG+ +EVL+  H G++ G   ++ GR+  
Sbjct: 365 VPADVVKERYGRLTALQERISHEE---NQRVVGRTVEVLVSAHEGRKDGDTRRVTGRAQD 421

Query: 435 LQSVVLN----SKNHNIGDIIKVRIT 456
            + V L+    S     GD + V +T
Sbjct: 422 GRLVHLDVPEGSAEPRPGDAVDVEVT 447


>gi|148273204|ref|YP_001222765.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
 gi|229890480|sp|A5CSL5|MIAB_CLAM3 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|147831134|emb|CAN02086.1| putative methylthioadenine synthetase [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
          Length = 528

 Score =  297 bits (761), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 171/446 (38%), Positives = 266/446 (59%), Gaps = 29/446 (6%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+ + V++YGCQMNV+DS R+     + GY      + AD++V+NTC +RE A  K+Y  
Sbjct: 18  PRTYEVRTYGCQMNVHDSERLTGSLEAAGYVSAEGAE-ADIVVINTCAVRENADNKLYGN 76

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LG +  +K  R  EG  + + V GC+AQ +   +L ++P V+VV G      LP LLERA
Sbjct: 77  LGHLAGVK--RRHEG--MQIAVGGCLAQKDRATVLEKAPWVDVVFGTHNMGALPTLLERA 132

Query: 144 RF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           R  G+  ++   S+E     L        R    + +++I  GC+  CTFC+VP  RG E
Sbjct: 133 RHNGEAQLEILESLETFPSTLPT-----KRDEIASGWVSISVGCNNTCTFCIVPALRGKE 187

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLV 261
             R    ++ E + L+D+G  E+TLLGQNVN++   G++ G++  F  LL +   I+GL 
Sbjct: 188 KDRRPGDILAEIQALVDDGAVEVTLLGQNVNSY---GVEFGDRQAFGKLLRAAGAIEGLE 244

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+T+ HP   +D +I A  +   +MP LH+P+QSGSDR+LK+M R + +  +  I+DR
Sbjct: 245 RIRFTSPHPAAFTDDVIDAMAETPAVMPQLHMPLQSGSDRVLKAMRRSYRSERFLGILDR 304

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R+  PD AI++D IVGFPGET++DF+ T+ +V+   ++ AF+F+YS R GTP + M EQ
Sbjct: 305 VRTRIPDAAITTDIIVGFPGETEEDFQETLRVVEAARFSSAFTFQYSIRPGTPAATMEEQ 364

Query: 382 VDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKH-GKEKG---KLVGRSPW 434
           V  +V  E   RL  LQ+++  ++   N   VG+ +EVL+  H G++ G   ++ GR+  
Sbjct: 365 VPADVVKERYGRLTALQERISHEE---NQRVVGRTVEVLVSAHEGRKDGDTRRVTGRAQD 421

Query: 435 LQSVVLN----SKNHNIGDIIKVRIT 456
            + V L+    S     GD ++V IT
Sbjct: 422 GRLVHLDVPAGSGEPRPGDAVEVEIT 447


>gi|84496889|ref|ZP_00995743.1| hypothetical protein JNB_05180 [Janibacter sp. HTCC2649]
 gi|84383657|gb|EAP99538.1| hypothetical protein JNB_05180 [Janibacter sp. HTCC2649]
          Length = 505

 Score =  297 bits (761), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 159/399 (39%), Positives = 242/399 (60%), Gaps = 18/399 (4%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSM------DDADLIVLNTCHIREKAAEKV 80
           + V+++GCQMNV+DS R+  +  + GY  V SM      + AD++V NTC +RE A  K+
Sbjct: 7   YDVRTHGCQMNVHDSERLAGLLETAGYVDVASMAGDQQPEAADVVVFNTCAVRENADNKL 66

Query: 81  YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140
           Y  LG++R  K    +   D+ + V GC+AQ + E I++R+P V+VV G      LP LL
Sbjct: 67  YGNLGQLREAK----RHNPDMQIAVGGCMAQKDRETIVQRAPWVDVVFGTHNIGSLPALL 122

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           +RAR  KR    +  + +  ER         R     A+++I  GC+  CTFC+VP  RG
Sbjct: 123 DRARHNKRA---EVEILESLERFPSTLP-TRRDSAYAAWVSISVGCNNTCTFCIVPSLRG 178

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKG 259
            E  R   +++ E + L+D GV E+TLLGQNVN +   G++ G++  F  LL +   I+G
Sbjct: 179 KEADRRPGEILAEIQALVDQGVVEVTLLGQNVNTY---GVEFGDRFAFGKLLRACGAIEG 235

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           L R+R+T+ HP   +D +I A  +   +MP LH+P+QSGSD++LK M R + + ++  II
Sbjct: 236 LERVRFTSPHPAAFTDDVIAAMAETPNVMPTLHMPLQSGSDKVLKDMRRSYRSEKFLGII 295

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
           DR+R   P+ AI++D IVGFPGET++DF  T+ +V++  ++ AF+F+YS R GTP + M 
Sbjct: 296 DRVREQIPNAAITTDIIVGFPGETEEDFAETLRVVEQSRFSSAFTFQYSIRPGTPAATMA 355

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI 418
           +Q+ ++V  ER L L K   E   + N A  G  +EVL+
Sbjct: 356 DQIPKDVVQERFLRLVKLQDEISWAENRALEGHTVEVLV 394


>gi|254821762|ref|ZP_05226763.1| hypothetical protein MintA_17652 [Mycobacterium intracellulare ATCC
           13950]
          Length = 394

 Score =  297 bits (761), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 159/401 (39%), Positives = 245/401 (61%), Gaps = 21/401 (5%)

Query: 23  VPQRFF-VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
            P R + V++YGCQMNV+DS R+  +  + GY+R     DAD++V NTC +RE A  K+Y
Sbjct: 6   APARTYQVRTYGCQMNVHDSERLAGLLEAAGYQRAAEDADADVVVFNTCAVRENADNKLY 65

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             L  +      R ++  ++ + V GC+AQ + + +LR++P V+VV G      LP LLE
Sbjct: 66  GNLSHL----APRKRDDPEMQIAVGGCLAQKDRDALLRKAPWVDVVFGTHNIGSLPTLLE 121

Query: 142 RARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           RAR  K   V+   ++++    L        R+    A+++I  GC+  CTFC+VP  RG
Sbjct: 122 RARHNKVAQVEIAEALQEFPSSLPSA-----RESAYAAWVSISVGCNNSCTFCIVPSLRG 176

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW----RGKGLDGEKCTFSDLLYSLSE 256
            E+ RS   ++ E   L+D+GV E+TLLGQNVNA+        L  ++  F+ LL +  +
Sbjct: 177 KEVDRSPDDILAEVASLVDDGVLEVTLLGQNVNAYGVSFADPALPRDRGAFARLLRACGD 236

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           I GL R+R+T+ HP + +D +I+A      + P LH+P+QSGSDR+L++M R + A  Y 
Sbjct: 237 IDGLERVRFTSPHPAEFTDDVIEAMAQTPNVCPALHMPLQSGSDRVLRAMRRSYRAERYL 296

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
            IIDR+R+  P  AI++D IVGFPGET++DF AT+D+V +  ++ AF+F+YS R GTP +
Sbjct: 297 GIIDRVRAAMPHAAITTDLIVGFPGETEEDFAATLDVVRRARFSAAFTFQYSKRPGTPAA 356

Query: 377 NMLEQVDENV---KAERLLCLQKKLREQQVSFNDACVGQII 414
           ++  Q+ + V   + ERL+ LQ+++  Q    N A VGQ +
Sbjct: 357 DLDGQLPKAVVQERYERLVALQEEISLQG---NQALVGQTV 394


>gi|213616133|ref|ZP_03371959.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-2068]
          Length = 316

 Score =  297 bits (761), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 147/309 (47%), Positives = 209/309 (67%), Gaps = 8/309 (2%)

Query: 113 EGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR--VVDTDYSVEDKFERLSIVDGGY 170
           EGE I +R+  V+++ GPQT +RLPE++   R G R  VVD  +   +KF+RL       
Sbjct: 2   EGEHIRQRAHYVDIIFGPQTLHRLPEMINSVR-GDRSPVVDISFPEIEKFDRLP-----E 55

Query: 171 NRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQ 230
            R  G TAF++I EGC+K+CT+CVVPYTRG E+SR    ++ E  +L   GV E+ LLGQ
Sbjct: 56  PRAEGPTAFVSIMEGCNKYCTYCVVPYTRGEEVSRPSDDILFEIAQLAAQGVREVNLLGQ 115

Query: 231 NVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY 290
           NVNAWRG+  DG   TF+DLL  ++ I G+ R+R+TTSHP + +D +I+ + D   L+ +
Sbjct: 116 NVNAWRGENYDGTTGTFADLLRLVAAIDGIDRIRFTTSHPIEFTDDIIEVYRDTPELVSF 175

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
           LHLPVQSGSDR+L  M R HTA EY+ II ++R+ RPDI ISSDFIVGFPGET DDF  T
Sbjct: 176 LHLPVQSGSDRVLNLMGRTHTALEYKAIIRKLRAARPDIQISSDFIVGFPGETTDDFEKT 235

Query: 351 MDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACV 410
           M L+  + +  ++SF +S R GTP ++M++ V E  K +RL  LQ+++ +Q ++++   +
Sbjct: 236 MKLIADVNFDMSYSFIFSARPGTPAADMVDDVPEEEKKQRLYILQERINQQAMAWSRRML 295

Query: 411 GQIIEVLIE 419
           G    +L+E
Sbjct: 296 GTTQRILVE 304


>gi|319948419|ref|ZP_08022558.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Dietzia
           cinnamea P4]
 gi|319437923|gb|EFV92904.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Dietzia
           cinnamea P4]
          Length = 522

 Score =  297 bits (761), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 160/453 (35%), Positives = 261/453 (57%), Gaps = 35/453 (7%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDA------DLIVLNTCHIREKAAEKV 80
           + V+++GCQMNV+DS R+  +  + GY       D       DL+V NTC +RE A  ++
Sbjct: 21  YQVRTFGCQMNVHDSERLSGVLDAAGYVPFEGDADPATGSLPDLVVFNTCAVRENADNRL 80

Query: 81  YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140
           Y  LG +R  K++  +    L + V GC+AQ + + ++ R+P V+VV G      LP LL
Sbjct: 81  YGTLGHLRPWKDANPR----LQIAVGGCLAQKDKDAVVSRAPWVDVVFGTHNLGHLPTLL 136

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           +R+R  +R    +  + D  +          R      ++++  GC+  CTFC+VP  RG
Sbjct: 137 DRSRHNERA---EVEIADSLQHFPSTLPA-TRDSAYAGWVSVSVGCNNTCTFCIVPSLRG 192

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL-----DGEKCTFSDLLYSLS 255
            E+ R   +V+ E + L D GV E+TLLGQNVNA+ G+         +K  F+ LL +  
Sbjct: 193 KEVDRRPGEVLAEMQALADEGVLEVTLLGQNVNAY-GRSFHDPDEPSDKGAFAKLLRAAG 251

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
            I+G+ R+R+T+ HP + +D +I+A      + P LH+P+QSGSDR+L++M R + +  +
Sbjct: 252 RIEGIERIRFTSPHPAEFTDDVIEAMASTPTVCPQLHMPLQSGSDRVLRAMRRSYRSERF 311

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
             IIDR+R+  P  AI++D IVGFPGET++DF+AT+D+V+K  ++ AF+F+YSPR GTP 
Sbjct: 312 LGIIDRVRAAMPHAAITTDIIVGFPGETEEDFQATLDVVEKARFSSAFTFQYSPRPGTPA 371

Query: 376 SNMLEQVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK----GKL 428
           + M +Q+ + V   + ERL+ LQ+++  ++   N A VG+++E+L+      K     ++
Sbjct: 372 ATMEDQIPKAVVQERYERLIALQERITLEE---NQAQVGRVVELLVTADEGRKDAATARM 428

Query: 429 VGRSP-----WLQSVVLNSKNHNIGDIIKVRIT 456
            GR+          V   +     GD++  R+T
Sbjct: 429 TGRARDGRLVHFAPVGEAADRVRPGDVVTTRVT 461


>gi|329736221|gb|EGG72493.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
           epidermidis VCU028]
          Length = 514

 Score =  297 bits (761), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 169/446 (37%), Positives = 263/446 (58%), Gaps = 15/446 (3%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           F +K+YGCQMN +D+  M  +  + GY   + +++AD+I++NTC IRE A  KV+S +G 
Sbjct: 70  FLIKTYGCQMNAHDTEVMAGILNALGYSATSDINEADVILINTCAIRENAENKVFSEIGN 129

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           +++LK    KE  D L+ V GC++Q E    +IL+    V++V G    + LPE+LE A 
Sbjct: 130 LKHLK----KERPDCLIGVCGCMSQEESVVNKILKSYQNVDMVFGTHNIHHLPEILEEAY 185

Query: 145 FGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             K +V   +S E D  E L  V  G+     + A++ I  GCDKFCT+C+VP+TRG E 
Sbjct: 186 LSKAMVVEVWSKEGDIIENLPKVRDGH-----IKAWVNIMYGCDKFCTYCIVPFTRGKER 240

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR    ++DE R+L   G  EITLL QNVN++ GK ++G      DLL  +S+I  + R+
Sbjct: 241 SRRPEDIIDEVRELAREGYQEITLLDQNVNSY-GKDIEGLDYELGDLLEDISKI-DIPRV 298

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+TTSHP D +D +I+       ++P++HLPVQSG++++LK M R++T   Y  ++ RI+
Sbjct: 299 RFTTSHPWDFTDRMIEVIAKGGNIVPHIHLPVQSGNNQVLKIMGRKYTRESYLDLVSRIK 358

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              P++A+++D IVG+P ET++ F  T+ L D + +  A+++ YS R GTP + M + V 
Sbjct: 359 EAIPNVALTTDIIVGYPNETEEQFEETLSLYDDVQFEHAYTYLYSQRDGTPAAKMKDNVP 418

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSPWLQSVVLNS 442
             VK ERL  L KK+            G+I+ VL E    K++  L G +   + V    
Sbjct: 419 LEVKKERLQRLNKKVGIYSQQAMSQYEGKIVTVLCEGSSKKDENVLAGYTDKNKLVNFKG 478

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
              +IG ++ V+I + K  +L G  +
Sbjct: 479 PRESIGKLVDVKIDEAKQYSLNGTFI 504


>gi|254776064|ref|ZP_05217580.1| hypothetical protein MaviaA2_15530 [Mycobacterium avium subsp.
           avium ATCC 25291]
          Length = 490

 Score =  297 bits (761), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 163/414 (39%), Positives = 244/414 (58%), Gaps = 21/414 (5%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERV-NSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + V++YGCQMNV+DS R+  +  + GY R     + AD++V NTC +RE A  K+Y  L 
Sbjct: 4   YQVRTYGCQMNVHDSERLAGLLEAAGYRRAAEGAEVADVVVFNTCAVRENADNKLYGNLS 63

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +      R +   ++ + V GC+AQ + E +LRR+P V+VV G      LP LLERAR 
Sbjct: 64  HL----APRKRGNPEMQIAVGGCLAQKDREAVLRRAPWVDVVFGTHNIGSLPTLLERARH 119

Query: 146 GKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            K   V+   +++     L        R+    A+++I  GC+  CTFC+VP  RG E+ 
Sbjct: 120 NKAAQVEIAEALQQFPSSLPSA-----RESAYAAWVSISVGCNNSCTFCIVPSLRGKEVD 174

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAW----RGKGLDGEKCTFSDLLYSLSEIKGL 260
           RS   ++ E R L+ +GV E+TLLGQNVNA+        L  ++  F+ LL +  EI GL
Sbjct: 175 RSPDDILAEVRSLVADGVLEVTLLGQNVNAYGVSFADPALPRDRGAFARLLRACGEIDGL 234

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+T+ HP + +D +I+A      + P LH+P+QSGSDR+L++M R + A  +  IID
Sbjct: 235 ERVRFTSPHPAEFTDDVIEAMAQTPNVCPALHMPLQSGSDRVLRAMRRSYRAERFLGIID 294

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           R+R+  P  AI++D IVGFPGET++DF AT+D+V +  +A AF+F+YS R GTP + +  
Sbjct: 295 RVRAAMPHAAITTDLIVGFPGETEEDFAATLDVVRRARFAAAFTFQYSKRPGTPAAELDG 354

Query: 381 QVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR 431
           Q+ + V   + ERL+ LQ+ +  Q    N A VGQ +E+L+      K     R
Sbjct: 355 QIPKAVVQERYERLVELQESISLQG---NQALVGQTVELLVATGEGRKDSATAR 405


>gi|41408944|ref|NP_961780.1| hypothetical protein MAP2846c [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|81413559|sp|Q73W15|MIAB_MYCPA RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|41397303|gb|AAS05163.1| hypothetical protein MAP_2846c [Mycobacterium avium subsp.
           paratuberculosis K-10]
          Length = 517

 Score =  297 bits (760), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 163/414 (39%), Positives = 244/414 (58%), Gaps = 21/414 (5%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERV-NSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + V++YGCQMNV+DS R+  +  + GY R     + AD++V NTC +RE A  K+Y  L 
Sbjct: 31  YQVRTYGCQMNVHDSERLAGLLEAAGYRRAAEGAEVADVVVFNTCAVRENADNKLYGNLS 90

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +      R +   ++ + V GC+AQ + E +LRR+P V+VV G      LP LLERAR 
Sbjct: 91  HL----APRKRGNPEMQIAVGGCLAQKDREAVLRRAPWVDVVFGTHNIGSLPTLLERARH 146

Query: 146 GKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            K   V+   +++     L        R+    A+++I  GC+  CTFC+VP  RG E+ 
Sbjct: 147 NKAAQVEIAEALQQFPSSLPSA-----RESAYAAWVSISVGCNNSCTFCIVPSLRGKEVD 201

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAW----RGKGLDGEKCTFSDLLYSLSEIKGL 260
           RS   ++ E R L+ +GV E+TLLGQNVNA+        L  ++  F+ LL +  EI GL
Sbjct: 202 RSPDDILAEVRSLVADGVLEVTLLGQNVNAYGVSFADPALPRDRGAFARLLRACGEIDGL 261

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+T+ HP + +D +I+A      + P LH+P+QSGSDR+L++M R + A  +  IID
Sbjct: 262 ERVRFTSPHPAEFTDDVIEAMAQTPNVCPALHMPLQSGSDRVLRAMRRSYRAERFLGIID 321

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           R+R+  P  AI++D IVGFPGET++DF AT+D+V +  +A AF+F+YS R GTP + +  
Sbjct: 322 RVRAAMPHAAITTDLIVGFPGETEEDFAATLDVVRRARFAAAFTFQYSKRPGTPAAELDG 381

Query: 381 QVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR 431
           Q+ + V   + ERL+ LQ+ +  Q    N A VGQ +E+L+      K     R
Sbjct: 382 QIPKAVVQERYERLVELQESISLQG---NQALVGQTVELLVATGEGRKDSATAR 432


>gi|308068737|ref|YP_003870342.1| hypothetical protein PPE_01968 [Paenibacillus polymyxa E681]
 gi|305858016|gb|ADM69804.1| Conserved hypothetical protein [Paenibacillus polymyxa E681]
          Length = 517

 Score =  297 bits (760), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 174/447 (38%), Positives = 267/447 (59%), Gaps = 14/447 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + + V ++GCQMN +DS  ++ +    GY+      +AD+I+LNTC IRE A +KV+  L
Sbjct: 74  KHYIVYTFGCQMNEHDSETIKGLLEQMGYQATEDRKEADIILLNTCAIRENAEDKVFGEL 133

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G +++LK     E   LL+ V GC++Q E     I+++   V+++ G    +RLP+L++ 
Sbjct: 134 GHLKHLKT----EKPGLLLGVCGCMSQEENVVNRIMQKHGFVDMIFGTHNIHRLPQLVKE 189

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           A F K +V   +S E       I++    ++ G+ A++ I  GCDKFCT+C+VP+TRG E
Sbjct: 190 ALFSKEMVVEVWSKEG-----DIIENLPKKREGMRAWVNIMYGCDKFCTYCIVPFTRGKE 244

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR    V+ E R L   G  EITLLGQNVNA+ GK L      F DL+  + +I  + R
Sbjct: 245 RSRRPEDVIAEVRDLARQGFKEITLLGQNVNAY-GKDLKDLNYRFGDLMDDMRKI-NIPR 302

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHPRD  D L++  G    L+ ++HLPVQSG+  ILK MNR++T     ++  +I
Sbjct: 303 VRFTTSHPRDFDDHLVEVLGKGGNLVEHIHLPVQSGNTDILKKMNRKYTRERVLELAAKI 362

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           ++  P +++++D IVGFPGETD+ F  T+ LV ++GY  A++F YSPR GTP ++M + V
Sbjct: 363 KAAVPHVSLTTDIIVGFPGETDEQFEDTLSLVREVGYDFAYTFIYSPREGTPAASMEDNV 422

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVLN 441
             +VK ERL  L   + +  + FN    G+++EVL+E   K   K L GR+   + V   
Sbjct: 423 PMSVKKERLRRLNIAVNQNSLRFNSRLRGEVVEVLVEGESKNDSKVLAGRTRSNKLVHFE 482

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                IG  ++V+IT+     + G+LV
Sbjct: 483 GSKDLIGSFVQVKITEPMTFYIKGDLV 509


>gi|260172734|ref|ZP_05759146.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacteroides
           sp. D2]
 gi|315921024|ref|ZP_07917264.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313694899|gb|EFS31734.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 460

 Score =  297 bits (760), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 167/452 (36%), Positives = 266/452 (58%), Gaps = 20/452 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F+++YGCQMNV DS  +  +    GY    ++++AD + +NTC IR+ A +K+ + L
Sbjct: 20  KKLFIETYGCQMNVADSEVIASVMQMAGYSVAETLEEADAVFMNTCSIRDNAEQKILNRL 79

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
               +LK  +      L+V V GC+A+   ++++     V++VVGP  Y  LP+L+    
Sbjct: 80  EFFHSLKKKKKH----LIVGVLGCMAERVKDDLITNHH-VDLVVGPDAYLTLPDLIAAVE 134

Query: 145 FGKRVVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            G++ ++ + S  + +  +  S + G +     ++ F++I  GC+ FCT+C+VPYTRG E
Sbjct: 135 TGEKAINVELSTTETYRDVIPSRICGNH-----ISGFVSIMRGCNNFCTYCIVPYTRGRE 189

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR +  +++E   L+  G  E+TLLGQNVN++R +   GE  TF  LL +++E    VR
Sbjct: 190 RSRDVESILNEVADLVAKGYKEVTLLGQNVNSYRFERPTGEVVTFPMLLRTVAEAAPGVR 249

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP+DMSD  ++    +  +  ++HLPVQSGS RILK MNR++T   Y   +  I
Sbjct: 250 IRFTTSHPKDMSDETLEVIAQVPNVCKHIHLPVQSGSSRILKLMNRKYTREWYLDRVAAI 309

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE-Q 381
           + + PD  +++D   GF  ET++D   ++ L+++ GY  AF FKYS R GT  S  LE  
Sbjct: 310 KRIIPDCGLTTDIFSGFHSETEEDHALSLSLMEECGYDAAFMFKYSERPGTYASKHLEDN 369

Query: 382 VDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQS 437
           V E VK  RL   + LQ +L  +    N  C+G+  EVL+E   K  + +L GR+   + 
Sbjct: 370 VSEEVKVRRLNEIIALQNRLSAES---NQRCIGKTYEVLVEGVSKRSRDQLFGRTEQNRV 426

Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
           VV +   H +GD + VR+T+   +TL GE VV
Sbjct: 427 VVFDRGTHRVGDFVNVRVTEASSATLKGEEVV 458


>gi|296188730|ref|ZP_06857117.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Clostridium
           carboxidivorans P7]
 gi|296046657|gb|EFG86104.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Clostridium
           carboxidivorans P7]
          Length = 386

 Score =  297 bits (760), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 159/368 (43%), Positives = 232/368 (63%), Gaps = 14/368 (3%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           FF++++GCQMN  DS ++  M    GYER     D+DLI+ NTC +RE A  KVY  LG 
Sbjct: 15  FFIETWGCQMNEEDSEKLSGMLKKIGYERTEVKQDSDLIIFNTCCVRENAELKVYGNLGA 74

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           ++ LK+ +      L++ + GC+ Q EG  +EI++R P V+++ G    Y+ PE L R +
Sbjct: 75  LKKLKDKKPD----LIIAICGCMMQQEGMAKEIVKRFPFVDIIFGTHNAYKFPEYLNRVK 130

Query: 145 FGKRVVDTDYSVEDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             +  +    + ED      IV+G   +RK  V AF+TI  GC+ FCT+C+VP+ RG E 
Sbjct: 131 QEQNSIIEIQNKED-----GIVEGLPIDRKSDVKAFVTIMYGCNNFCTYCIVPFVRGRER 185

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR    + +E + LI  G  EITLLGQNVN++ GK L+  K +F++LL  ++EI+GL R+
Sbjct: 186 SRKPEDIENEIKDLISKGYKEITLLGQNVNSY-GKDLEP-KVSFANLLRRINEIEGLERI 243

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           ++ T HP+D +  ++ A  + + +   +HLPVQSGS RILK MNR +T  +Y  ++ RIR
Sbjct: 244 KFMTPHPKDFTQDVLDAIAECENVCEQVHLPVQSGSSRILKKMNRHYTKEQYLDLVRRIR 303

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              PD+AI++D IVGFPGET++DF  T+ L  ++ Y  AF+F YS R GTP   M EQ+ 
Sbjct: 304 ETIPDVAITTDIIVGFPGETEEDFEETLSLAREVQYDSAFTFIYSRRKGTPADEMEEQIA 363

Query: 384 ENVKAERL 391
           E+VK ER 
Sbjct: 364 EDVKHERF 371


>gi|257791365|ref|YP_003181971.1| RNA modification enzyme, MiaB family [Eggerthella lenta DSM 2243]
 gi|257475262|gb|ACV55582.1| RNA modification enzyme, MiaB family [Eggerthella lenta DSM 2243]
          Length = 459

 Score =  297 bits (760), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 172/459 (37%), Positives = 265/459 (57%), Gaps = 35/459 (7%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           F ++++GCQMN +DS R+  M    G  +V++++DAD++   TC +RE A  ++Y   G+
Sbjct: 10  FCIRTFGCQMNKHDSERIAGMLEGMGALQVDAIEDADVVAFMTCCVREAADTRLY---GQ 66

Query: 87  IRNLKNSRIKEGGDL---LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           + +LKN  ++ G  L   +V V GC+ Q +GE+++     ++VV G      LP LLE A
Sbjct: 67  VASLKNVPLRAGTPLSKRIVAVGGCIGQRDGEKLVDELKHLDVVFGTHNLGSLPRLLEAA 126

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYN--------RKRGVTAFLTIQEGCDKFCTFCVV 195
                       +E+   ++ ++D   +        R+    A+L I  GC+ FC++C+V
Sbjct: 127 ------------LEEGSHQVEVLDAASSFPTELPTAREHEWAAWLPITIGCNNFCSYCIV 174

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
           PY RG E SR L  +V EA + +  GV EITLLGQNVN++ G+ L G    F+ +L +L 
Sbjct: 175 PYVRGREKSRPLEDIVAEAERYVAAGVKEITLLGQNVNSY-GRDLYGSP-RFAQVLDALD 232

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
           +  G+ RLR+ TSHP+D++D ++     L  LMP LHLPVQSGSD +L +MNRR+T   Y
Sbjct: 233 QT-GIERLRFATSHPKDLNDEVVGRFATLRSLMPALHLPVQSGSDAVLAAMNRRYTRDHY 291

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
           R ++ ++R   PDIA+S+D IVGFPGET  DF  T  LVD++GY Q F+F YS R GTP 
Sbjct: 292 RALVAKLRDAVPDIALSTDIIVGFPGETAKDFEDTYRLVDEVGYHQVFTFIYSKREGTPA 351

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GRSPW 434
           ++M +     V  +R   L   ++++    N   +G  ++VL+E   K   +L+ G+SP 
Sbjct: 352 ASMDDDTPREVIQQRFDRLVDLVQQRAFEANQRDLGSTVDVLVEGASKRDERLLAGKSPK 411

Query: 435 LQSVVLNSK-----NHNIGDIIKVRITDVKISTLYGELV 468
            Q+V   +          G  ++VR+ + K   L GE+V
Sbjct: 412 NQTVHAPAPAGVRAEDLAGSTVRVRVDEAKTWYLAGEIV 450


>gi|310828246|ref|YP_003960603.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Eubacterium limosum
           KIST612]
 gi|308739980|gb|ADO37640.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Eubacterium limosum
           KIST612]
          Length = 439

 Score =  297 bits (760), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 161/445 (36%), Positives = 265/445 (59%), Gaps = 15/445 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + + + ++GCQMN  DS ++  +  + GY     ++ A +++LNTC +RE A  +V+  L
Sbjct: 3   KTYKIMTFGCQMNENDSEKISGLLKNMGYTPEEDVNKAGVVILNTCSVRENADVRVFGNL 62

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELL-E 141
           G  +++K    K   DL++ V GC+ Q     ++I  + P V++V G    ++ P++L  
Sbjct: 63  GTFKSVK----KVNPDLVLAVCGCMMQQPEIVKKIKEKYPQVDLVFGTHNIHQFPQMLGN 118

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
             + G+R+ +      +  E L +     +RK    +F+TI  GC+ FCT+C+VPYTRG 
Sbjct: 119 YLQRGERIFEIWDDSHEIIEDLPV-----DRKYPFKSFVTIMNGCNNFCTYCIVPYTRGR 173

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E+SR   ++++E  +L D G  E+TLLGQNVN++      G    F+DLL  L++I+ + 
Sbjct: 174 EVSRQPEKIIEEVTRLADEGCLEVTLLGQNVNSYGNDLKTGYH--FADLLRDLNQIEKIK 231

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+ TSHP+D++D +I+A    D + P +HL +QSGS R+LK+MNRR+T  +   ++D+
Sbjct: 232 RIRFMTSHPKDLTDEVIEAIAQCDKVCPAIHLAIQSGSTRVLKAMNRRYTKEQIIDLVDK 291

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +RS  PD+AI++D IVGFPGET++DF+ T++++    +  AFSF YS R GTP + M  Q
Sbjct: 292 VRSRIPDVAITTDIIVGFPGETEEDFQDTLEVMRACKFDSAFSFIYSIRTGTPAATMENQ 351

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLVGRSPWLQSVVL 440
           + + +K +RL  L   LR+     N    G+++ VL+E+  K    +L GR+   + V  
Sbjct: 352 IPDEIKHDRLNRLLDVLRDISFGLNSKYEGRVLPVLVEEPSKNNSDRLSGRTETGKLVNF 411

Query: 441 NSKNHNIGDIIKVRITDVKISTLYG 465
                NIG I+ V+IT     +L G
Sbjct: 412 EGSFENIGKIVNVKITKAGSFSLTG 436


>gi|317490506|ref|ZP_07948986.1| MiaB family RNA modification enzyme [Eggerthella sp. 1_3_56FAA]
 gi|316910399|gb|EFV32028.1| MiaB family RNA modification enzyme [Eggerthella sp. 1_3_56FAA]
          Length = 452

 Score =  297 bits (760), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 172/459 (37%), Positives = 265/459 (57%), Gaps = 35/459 (7%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           F ++++GCQMN +DS R+  M    G  +V++++DAD++   TC +RE A  ++Y   G+
Sbjct: 3   FCIRTFGCQMNKHDSERIAGMLEGMGALQVDAIEDADIVAFMTCCVREAADTRLY---GQ 59

Query: 87  IRNLKNSRIKEGGDL---LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           + +LKN  ++ G  L   +V V GC+ Q +GE+++     ++VV G      LP LLE A
Sbjct: 60  VASLKNVPLRAGTPLSKRIVAVGGCIGQRDGEKLVDELKHLDVVFGTHNLGSLPRLLEAA 119

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYN--------RKRGVTAFLTIQEGCDKFCTFCVV 195
                       +E+   ++ ++D   +        R+    A+L I  GC+ FC++C+V
Sbjct: 120 ------------LEEGGHQVEVLDAASSFPTELPTAREHEWAAWLPITIGCNNFCSYCIV 167

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
           PY RG E SR L  +V EA + +  GV EITLLGQNVN++ G+ L G    F+ +L +L 
Sbjct: 168 PYVRGREKSRPLEDIVAEAERYVAAGVKEITLLGQNVNSY-GRDLYGSP-RFAQVLDALD 225

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
           +  G+ RLR+ TSHP+D++D ++     L  LMP LHLPVQSGSD +L +MNRR+T   Y
Sbjct: 226 QT-GIERLRFATSHPKDLNDEVVGRFATLRSLMPALHLPVQSGSDAVLAAMNRRYTRDHY 284

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
           R ++ ++R   PDIA+S+D IVGFPGET  DF  T  LVD++GY Q F+F YS R GTP 
Sbjct: 285 RALVAKLRDAVPDIALSTDIIVGFPGETAKDFEDTYRLVDEVGYHQVFTFIYSKREGTPA 344

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GRSPW 434
           ++M +     V  +R   L   ++++    N   +G  ++VL+E   K   +L+ G+SP 
Sbjct: 345 ASMDDDTPREVIQQRFDRLVDLVQQRAFEANQRDLGSTVDVLVEGASKRDERLLAGKSPK 404

Query: 435 LQSVVLNSK-----NHNIGDIIKVRITDVKISTLYGELV 468
            Q+V   +          G  ++VR+ + K   L GE+V
Sbjct: 405 NQTVHAPAPAGVRAEDLAGSTVRVRVDEAKTWYLAGEIV 443


>gi|255693332|ref|ZP_05417007.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacteroides finegoldii
           DSM 17565]
 gi|260620909|gb|EEX43780.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacteroides finegoldii
           DSM 17565]
          Length = 455

 Score =  297 bits (760), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 166/449 (36%), Positives = 264/449 (58%), Gaps = 20/449 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F+++YGCQMNV DS  +  +    GY    ++++AD + +NTC IR+ A +K+ + L
Sbjct: 18  KKLFIETYGCQMNVADSEVIASVMQMAGYSVAETLEEADAVFMNTCSIRDNAEQKILNRL 77

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
               +LK  +      L+V V GC+A+   ++++     V++VVGP  Y  LP+L+    
Sbjct: 78  EFFHSLKKKKKH----LIVGVLGCMAERVKDDLITNHH-VDLVVGPDAYLTLPDLIAAVE 132

Query: 145 FGKRVVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            G++ ++ + S  + +  +  S + G +     ++ F++I  GC+ FCT+C+VPYTRG E
Sbjct: 133 AGEKAINVELSTTETYRDVIPSRICGNH-----ISGFVSIMRGCNNFCTYCIVPYTRGRE 187

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR +  +++E   L+  G  E+TLLGQNVN++R +   GE  TF  LL +++E    VR
Sbjct: 188 RSRDVESILNEVADLVAKGYKEVTLLGQNVNSYRFEKPTGETVTFPMLLRTVAEAAPGVR 247

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP+DMSD  ++    +  +  ++HLPVQSGS RILK MNR++T   Y   +  I
Sbjct: 248 IRFTTSHPKDMSDETLEVIAQVPNVCKHIHLPVQSGSSRILKLMNRKYTREWYLDRVAAI 307

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE-Q 381
           + + PD  +++D   GF  ET++D   ++ L+++ GY  AF FKYS R GT  S  LE  
Sbjct: 308 KRIIPDCGLTTDIFSGFHSETEEDHAMSLSLMEECGYDAAFMFKYSERPGTYASKHLEDN 367

Query: 382 VDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQS 437
           V E VK  RL   + LQ +L  +    N  C+G+  EVL+E   K  + +L GR+   + 
Sbjct: 368 VPEEVKVRRLNEIIALQNRLSAES---NQRCIGKTYEVLVEGVSKRSRDQLFGRTEQNRV 424

Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGE 466
           VV +   H +GD + VRIT+   +TL GE
Sbjct: 425 VVFDRGTHRVGDFVNVRITEASSATLKGE 453


>gi|119868239|ref|YP_938191.1| RNA modification protein [Mycobacterium sp. KMS]
 gi|229890568|sp|A1UEZ3|MIAB_MYCSK RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|119694328|gb|ABL91401.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Mycobacterium sp. KMS]
          Length = 529

 Score =  296 bits (759), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 167/448 (37%), Positives = 258/448 (57%), Gaps = 40/448 (8%)

Query: 13  MVSQIVDQCI-----VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVL 67
           M S +  Q       V + + V++YGCQMNV+DS R+  +    GY R     DAD++V 
Sbjct: 1   MTSTVTQQAANALPPVARTYQVRTYGCQMNVHDSERLAGLLEDAGYRRAADGADADVVVF 60

Query: 68  NTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVV 127
           NTC +RE A  K+Y  L  +   K S  +    + + V GC+AQ + + +LRR+P V+VV
Sbjct: 61  NTCAVRENADNKLYGNLSHLAPRKRSEPQ----MQIAVGGCLAQKDRDAVLRRAPWVDVV 116

Query: 128 VGPQTYYRLPELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGC 186
            G      LP LLERAR  +   V+   ++++    L        R+     +++I  GC
Sbjct: 117 FGTHNIGSLPTLLERARHNRAAQVEIAEALQEFPSTLPAA-----RESAYAGWVSISVGC 171

Query: 187 DKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW----------- 235
           +  CTFC+VP  RG E+ R    V+ E + L+D GV E+TLLGQNVNA+           
Sbjct: 172 NNTCTFCIVPSLRGKEVDRRPGDVLAEIQTLVDQGVLEVTLLGQNVNAYGVSFAADERLR 231

Query: 236 ----RGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL 291
                 + +   +  F++LL +   I GL R+R+T+ HP + +D +I+A  +   + P L
Sbjct: 232 EDPRMWQSVPRNRGAFAELLRACGRIDGLERVRFTSPHPAEFTDDVIEAMAETPNVCPAL 291

Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351
           H+P+QSGSDRIL++M R + A +Y  IIDR+R+  PD AI++D IVGFPGET++DF+AT+
Sbjct: 292 HMPLQSGSDRILRAMRRSYRAEKYLGIIDRVRAAIPDAAITTDLIVGFPGETEEDFQATL 351

Query: 352 DLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDA 408
           D+V    ++ AF+F+YS R GTP ++M  Q+ + V +E   RL+ LQ+++  ++   N A
Sbjct: 352 DVVAASRFSSAFTFQYSKRPGTPAADMPGQLPKAVVSERYQRLIELQERISLEE---NQA 408

Query: 409 CVGQIIEVLIEKHGKEK----GKLVGRS 432
            VG+ +E+L+      K     +L GR+
Sbjct: 409 QVGRTLELLVATGEGRKDAATARLSGRA 436


>gi|254431186|ref|ZP_05044889.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Cyanobium sp. PCC 7001]
 gi|197625639|gb|EDY38198.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Cyanobium sp. PCC 7001]
          Length = 476

 Score =  296 bits (759), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 174/456 (38%), Positives = 265/456 (58%), Gaps = 27/456 (5%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           +++ ++GCQMN  DS RM  +  + GY    +  +ADL++ NTC IR+ A +KVYS+LGR
Sbjct: 34  YWITTFGCQMNKADSERMAGILEAMGYREAGAELEADLVLYNTCTIRDNAEQKVYSYLGR 93

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
               +  R +   +L +VVAGCVAQ EGE +LRR P +++V+GPQ   RL  LL +   G
Sbjct: 94  ----QAQRKRANPNLTLVVAGCVAQQEGEALLRRVPELDLVMGPQHANRLETLLSQVEQG 149

Query: 147 KRVVDTD--YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
           ++VV T+  + +ED      I      R   V A++ +  GC++ CT+CVVP  RG E S
Sbjct: 150 QQVVATEEHHILED------ITTA--RRDSSVCAWVNVIYGCNERCTYCVVPSVRGQEQS 201

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG------EKCTFSDLLYSLSEIK 258
           R    +  E   L   G  E TLLGQN++A+ G+ L G       + T +DLL  + +++
Sbjct: 202 RLPEAIRLEMEGLAARGFKETTLLGQNIDAY-GRDLPGITPEGRRRHTLTDLLQFVHDVE 260

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           G+ R+R+ TSHPR  ++ LI A   L  +  + H+P QSG D +LK+M R +T   YR+I
Sbjct: 261 GIERIRFATSHPRYFTERLIDACAALPKVCEHFHIPFQSGDDAVLKAMARGYTVERYRRI 320

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           + RIR   PD AIS+D IV FPGETD  FR T+ LV++IG+ Q  +  YSPR  TP ++ 
Sbjct: 321 VHRIRERMPDAAISADVIVAFPGETDAQFRNTLRLVEEIGFDQVNTAAYSPRPNTPAADW 380

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRS----- 432
            +Q+ E VK ERL  L   + +Q    +    G+  +VL+E  + ++  + +GR+     
Sbjct: 381 PDQLSEAVKVERLRELNALVEQQARRRSARYAGRTEQVLVEGTNPRDPSQRMGRTRTNRL 440

Query: 433 PWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            +  ++  + +    GD++ VRI +V+  +L G L 
Sbjct: 441 TFFPALRPDGRAVEPGDLVNVRIEEVRAFSLSGTLA 476


>gi|283768308|ref|ZP_06341220.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bulleidia extructa W1219]
 gi|283104700|gb|EFC06072.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bulleidia extructa W1219]
          Length = 480

 Score =  296 bits (759), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 171/448 (38%), Positives = 258/448 (57%), Gaps = 16/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++++VK+YGCQ NV D   +  M    G+      + AD+I+ NTC IR  A EKV + +
Sbjct: 43  KKYYVKTYGCQANVRDGESLSGMLEMMGFTYAEVPEKADVILFNTCAIRRAAEEKVMAEI 102

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G ++ LK    KE  +++ V+ GC+AQ +   EE+L++ P ++++ G    YR P LL+ 
Sbjct: 103 GNLKYLK----KEKPNIIFVLCGCMAQEKDVVEELLQKHPQLDLIFGTHNLYRFPALLQE 158

Query: 143 ARFGKRVVDTDYSVEDKF-ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
               K      YS E +  E L +      R      F+ I  GCDKFCT+C+VPYTRG 
Sbjct: 159 VMVKKIQKVEVYSQEGEVVESLPV-----KRSMSSKGFVNIMYGCDKFCTYCIVPYTRGK 213

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR +  +++E   L  +G  E+ LLGQNVNA+ GK L  E   F+DLL ++S+  G+ 
Sbjct: 214 ERSRRMKDILEEVSALKKSGRKEVVLLGQNVNAY-GKDLHMED-GFTDLLRAISDT-GIE 270

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+ TSHPRD    LI    +   +MP+LH PVQSGS+ ILK M R +T   Y  + D 
Sbjct: 271 RIRFYTSHPRDYRSSLIDLMAERKNIMPFLHFPVQSGSNEILKRMARGYTVEHYISLYDE 330

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +    P++  ++D IVGFPGE+D+DF  TM+LV+   Y  A++F YSPR+GTP ++M + 
Sbjct: 331 MMKKIPNMTFTTDIIVGFPGESDEDFEKTMNLVEHCQYDMAYTFLYSPRVGTPAASMTDS 390

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL-VGRSPWLQSVVL 440
           + + VK  RL  L ++LRE     N   +G+I+ VL E   K+  K+  G +   + V  
Sbjct: 391 ISKEVKKARLQRLNQRLREIAAKKNKVYLGRIVRVLCEGISKKNEKIYAGYTEDNKLVNF 450

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
           +   + + +I+ V IT+    TL G ++
Sbjct: 451 SCPWNCMDEIVDVEITETHSYTLNGRVL 478


>gi|78779785|ref|YP_397897.1| 2-methylthioadenine synthetase [Prochlorococcus marinus str. MIT
           9312]
 gi|123741439|sp|Q319I4|MIAB_PROM9 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|78713284|gb|ABB50461.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Prochlorococcus marinus
           str. MIT 9312]
          Length = 463

 Score =  296 bits (759), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 174/453 (38%), Positives = 261/453 (57%), Gaps = 23/453 (5%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           +++ ++GCQMN  DS RM       GY R +   +ADL++ NTC IR+ A  KVYSFLGR
Sbjct: 21  YWITTFGCQMNKADSERMAGTLEKMGYTRADDELNADLVLYNTCTIRDNAEHKVYSFLGR 80

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
               +  R  +   L +VVAGC+AQ EGE +LRR P +++V+GPQ    L  LL +   G
Sbjct: 81  ----QAKRKHKIPSLKLVVAGCLAQQEGESLLRRVPELDLVMGPQHVNNLENLLGKVDLG 136

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
            +V  T    E+ F    I +    R+  +  ++ I  GC++ C++CVVP  RG E SR 
Sbjct: 137 NQVAAT----EETFISEDITNA--RRESSICGWVNIIYGCNERCSYCVVPSVRGKEQSRY 190

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG------EKCTFSDLLYSLSEIKGL 260
            + +  E +KL D+   EITLLGQN++A+ G+ L G      ++ T +DLLY + +I G+
Sbjct: 191 PNAIKSEIQKLADDNFKEITLLGQNIDAY-GRDLPGTTKEGRKENTLTDLLYYIHDINGI 249

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+ TSHPR  S  LI+A  +LD +  + H+P QSG+D ILK M+R +   +Y+ IID
Sbjct: 250 SRIRFATSHPRYFSKRLIQACYELDKVCEHFHIPFQSGNDEILKQMSRGYNIKKYKNIID 309

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
            IRS+ PD +I++D IV FPGET+  ++ T+ L+  IG+ Q  +  YSPR  TP +    
Sbjct: 310 NIRSLMPDASITADAIVAFPGETEQQYQDTLKLISDIGFDQVNTAAYSPRPNTPAAVWSN 369

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSVV 439
           Q+ E VK  RL  +   + +   + N   +  I  VLIE  + K   +++GR+   +   
Sbjct: 370 QLSEEVKKTRLQEINALVEKTARNRNQRYINNIESVLIEGLNPKNSSQIMGRTRTNRLTF 429

Query: 440 LN-----SKNHNIGDIIKVRITDVKISTLYGEL 467
           +        N ++GD I VRI + +  +L GEL
Sbjct: 430 VKIPKNIQFNFSLGDEIDVRINEARPFSLTGEL 462


>gi|160945078|ref|ZP_02092304.1| hypothetical protein FAEPRAM212_02597 [Faecalibacterium prausnitzii
           M21/2]
 gi|158442809|gb|EDP19814.1| hypothetical protein FAEPRAM212_02597 [Faecalibacterium prausnitzii
           M21/2]
          Length = 463

 Score =  296 bits (759), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 184/472 (38%), Positives = 266/472 (56%), Gaps = 19/472 (4%)

Query: 3   LFIKLIGVAH--MVSQIVDQCI-VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSM 59
           +F++ I   H  + +++V Q    P   FV SYGCQ NV D  R++ +    GY   +  
Sbjct: 2   VFLEYINFEHNTVAAELVRQTYDTPPLAFVHSYGCQQNVNDGERIKGVLVDIGYGLCDKP 61

Query: 60  DDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVA-QAEGEEIL 118
           +DADLI+ NTC +RE A ++V+  +G ++ LK  +      L++ + GC+A Q    E L
Sbjct: 62  EDADLILFNTCAVREHAEQRVFGNVGALKGLKEKK----PGLIIGLCGCMANQKHVVEKL 117

Query: 119 RRS-PIVNVVVGPQTYYRLPELL-ERARFGKRVVDTDYSVEDKFERLSIVDG-GYNRKRG 175
           R+S P V++V G      LP+L+ ++ +  KRV+       D  +R  IV+     R+  
Sbjct: 118 RKSYPYVDLVFGVDGIDTLPQLIAQKLQKHKRVL------LDPAQRPVIVENIPIRRESE 171

Query: 176 VTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW 235
             A+L I  GCD FCT+C+VPY RG E SR    ++ E R L++ G  EITLLGQNVN++
Sbjct: 172 FRAWLPIMYGCDNFCTYCIVPYVRGREKSRKPGDILAEFRSLVEAGYKEITLLGQNVNSY 231

Query: 236 RGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPV 295
            GKGL+ E+  FSDLL  L  + G   +R+ TSHP+D S  LI        L  +LHLPV
Sbjct: 232 -GKGLE-EQIDFSDLLNLLCTVPGDYHIRFMTSHPKDASHKLIDTIAAQPKLCKHLHLPV 289

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
           Q GSDR+L+ MNR +T  +Y ++ID  R   P I  SSD IVGFPGET++DF  T++LV 
Sbjct: 290 QCGSDRLLQQMNRHYTVEQYLELIDYARKTVPGITFSSDIIVGFPGETEEDFVKTLELVR 349

Query: 356 KIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIE 415
           K+GY Q F+F YS R GT  + M +      K +R+  L     E  ++   A VGQ + 
Sbjct: 350 KVGYMQLFTFIYSKRTGTKAAEMPDPTPRKEKTDRMTRLLATQDEIAMALVKAQVGQTVR 409

Query: 416 VLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
           VL+E  G+ +G L GR     +V   +    +G    V +T  + + L GE+
Sbjct: 410 VLVEGFGRNEGTLSGRLDNNLTVEFAADPALLGSYATVHLTGARATVLLGEV 461


>gi|116747867|ref|YP_844554.1| RNA modification protein [Syntrophobacter fumaroxidans MPOB]
 gi|229891028|sp|A0LFB7|MIAB_SYNFM RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|116696931|gb|ABK16119.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Syntrophobacter
           fumaroxidans MPOB]
          Length = 456

 Score =  296 bits (759), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 179/463 (38%), Positives = 267/463 (57%), Gaps = 21/463 (4%)

Query: 13  MVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHI 72
           M++ +      P+  +V+++GCQMN YDS R   +  + GY   + + DAD+I LNTC +
Sbjct: 1   MITPLAKTAPAPRYLYVRTFGCQMNEYDSQRALRLLCAVGYRPTSDIADADVIFLNTCSV 60

Query: 73  REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT 132
           R+KA +KVYSFLGR+R LK  R      L +VVAGCVAQ  G+ +L+R   V++VVG + 
Sbjct: 61  RDKAEQKVYSFLGRLRRLKAHRPW----LKIVVAGCVAQQLGDGLLKRFEHVDLVVGTRG 116

Query: 133 YYRLPELLERARFGKRVVDTDYSVE------DKFERLSIVDGGYNRKRGVTAFLTIQEGC 186
              +  LLE     KR V    + E      DK   +   D        V A +TI +GC
Sbjct: 117 IGSIASLLEEVERSKRRVAHLPAEELQGFTTDKCRTVGTGD--------VVAQVTIMQGC 168

Query: 187 DKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT 246
           + FCT+C+VP+ RG E SR+   ++ E   L   G  E+ LLGQNVN++ G+GL  +  +
Sbjct: 169 NNFCTYCIVPHVRGRERSRAPDDILREIDFLASRGAREVLLLGQNVNSY-GRGLP-DPIS 226

Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306
           F DLL  + +   + R+R+TTSHP+D+++ LI+    L  L  +LHLP QSGSD ILK M
Sbjct: 227 FPDLLRRIGKETSIRRVRFTTSHPKDLTEDLIECFAGLPFLCKHLHLPFQSGSDGILKLM 286

Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
           +R +TA +Y + I R+R V P+IA+S+D IVGFP E+++D+  T+ L++++ +   FSF+
Sbjct: 287 HRGYTARQYLEKIARLREVCPEIALSTDVIVGFPAESEEDYLQTLRLIEEVRFDSLFSFR 346

Query: 367 YSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EK 425
           YS R  T  +   ++V  +VK  RL  LQ    +  +  N A  G + EVL+E   K   
Sbjct: 347 YSDRPLTRAAGFPDKVPMDVKVRRLARLQSIQADITLQKNLAETGTVREVLVEGPSKASN 406

Query: 426 GKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           G++ GR+   + +         G I+ VRI      +L GEL+
Sbjct: 407 GQMTGRTQQNRIINFQCPVDLTGKIVPVRIVAAYSHSLKGELL 449


>gi|295085878|emb|CBK67401.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacteroides xylanisolvens
           XB1A]
          Length = 460

 Score =  296 bits (759), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 167/452 (36%), Positives = 266/452 (58%), Gaps = 20/452 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F+++YGCQMNV DS  +  +    GY    ++++AD + +NTC IR+ A +K+ + L
Sbjct: 20  KKLFIETYGCQMNVADSEVIASVMQMAGYSVAETLEEADAVFMNTCSIRDNAEQKILNRL 79

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
               +LK  +      L+V V GC+A+   ++++     V++VVGP  Y  LP+L+    
Sbjct: 80  EFFHSLKKKKKH----LIVGVLGCMAERVKDDLITNHH-VDLVVGPDAYLTLPDLIAAVE 134

Query: 145 FGKRVVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            G++ ++ + S  + +  +  S + G +     ++ F++I  GC+ FCT+C+VPYTRG E
Sbjct: 135 TGEKAINVELSTTETYRDVIPSRICGNH-----ISGFVSIMRGCNNFCTYCIVPYTRGRE 189

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR +  +++E   L+  G  E+TLLGQNVN++R +   GE  TF  LL +++E    VR
Sbjct: 190 RSRDVESILNEVADLVAKGYKEVTLLGQNVNSYRFERPTGEVVTFPMLLRTVAEAAPGVR 249

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP+DMSD  ++    +  +  ++HLPVQSGS RILK MNR++T   Y   +  I
Sbjct: 250 IRFTTSHPKDMSDETLEVIAQVPNVCKHIHLPVQSGSSRILKLMNRKYTREWYLDRVAAI 309

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE-Q 381
           + + PD  +++D   GF  ET++D   ++ L+++ GY  AF FKYS R GT  S  LE  
Sbjct: 310 KRIIPDCGLTTDIFSGFHSETEEDHALSLSLMEECGYDAAFMFKYSERPGTYASKHLEDN 369

Query: 382 VDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQS 437
           V E VK  RL   + LQ +L  +    N  C+G+  EVL+E   K  + +L GR+   + 
Sbjct: 370 VPEEVKVRRLNEIIALQNRLSAES---NQRCIGKTYEVLVEGVSKRSRDQLFGRTEQNRV 426

Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
           VV +   H +GD + VR+T+   +TL GE VV
Sbjct: 427 VVFDRGTHRVGDFVNVRVTEASSATLKGEEVV 458


>gi|332670088|ref|YP_004453096.1| RNA modification enzyme, MiaB family [Cellulomonas fimi ATCC 484]
 gi|332339126|gb|AEE45709.1| RNA modification enzyme, MiaB family [Cellulomonas fimi ATCC 484]
          Length = 522

 Score =  296 bits (759), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 172/463 (37%), Positives = 273/463 (58%), Gaps = 37/463 (7%)

Query: 15  SQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDAD----LIVLNTC 70
           + + D   VP+ + VK+ GCQMNV+DS  M  M    GY   +  D A     +IV+NTC
Sbjct: 9   TPLADATDVPRTYLVKTLGCQMNVHDSEHMAGMLEQAGYVPASPADAAAEDADVIVINTC 68

Query: 71  HIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGP 130
            +RE AA+K+Y  LGR+   K +R      + + V GC+AQ +   I+ R+P V+VV G 
Sbjct: 69  AVRENAADKLYGNLGRLAGTKRARPG----MQIAVGGCLAQKDRTGIVERAPWVDVVFGT 124

Query: 131 QTYYRLPELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTA-FLTIQEGCDK 188
                LP LLERAR  ++  V+   S++     L        R+  V A +++I  GC+ 
Sbjct: 125 HNLDVLPVLLERARHNQKAEVEIAESLQVFPSTLP------TRRESVYAGWVSISVGCNN 178

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTF 247
            CTFC+VP+ RG E  R   +++ E   L+  G  E+TLLGQNVN++   G++ G++  F
Sbjct: 179 TCTFCIVPHLRGKERDRRPGEILAEVEALVQQGAIEVTLLGQNVNSY---GVEFGDRGAF 235

Query: 248 SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307
           + LL +   ++GL RLR+T+ HP   +D +I+A      +MP LH+P+QSGSDR+L++M 
Sbjct: 236 AKLLRAAGAVEGLERLRFTSPHPAAFTDDVIEAMAATPTVMPQLHMPLQSGSDRVLRAMR 295

Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           R + +  +  I+DR+R+  PD AI++D IVGFPGET++DF  T+ +V+   ++ AF+F+Y
Sbjct: 296 RSYRSERFLGILDRVRAAMPDAAITTDVIVGFPGETEEDFAETLRVVEASRFSSAFTFQY 355

Query: 368 SPRLGTPGSNMLEQVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGK 423
           SPR GTP +++ +Q+ + V   + ERL+ LQ+++  ++   N A VG+ +EVL+ E  G+
Sbjct: 356 SPRPGTPAADLPDQLPKAVVQERYERLVALQERISLEE---NRAQVGRTVEVLVAEGEGR 412

Query: 424 EKG---KLVGRSP-------WLQSVVLNSKNHNIGDIIKVRIT 456
           + G   +L GR+         L + +        GD++ V +T
Sbjct: 413 KDGVTERLSGRAQDNRLVHLALPAGLAPHDAPRPGDVVTVTVT 455


>gi|295395412|ref|ZP_06805611.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Brevibacterium
           mcbrellneri ATCC 49030]
 gi|294971734|gb|EFG47610.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Brevibacterium
           mcbrellneri ATCC 49030]
          Length = 488

 Score =  296 bits (759), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 166/442 (37%), Positives = 260/442 (58%), Gaps = 24/442 (5%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           + VK+YGCQMNV+DS R+  +    GY      + AD++V NTC +RE A  ++Y  LGR
Sbjct: 9   YEVKTYGCQMNVHDSERLSGLLDDAGYTPAEPNEQADVVVFNTCAVRENADNRLYGNLGR 68

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           +  +K +      +L + V GC+AQ + + I+ R+P V+VV G      LP LLERAR  
Sbjct: 69  LAEVKETHP----ELQIAVGGCMAQKDRDTIVERAPWVDVVFGTHNMGSLPVLLERARHN 124

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVT--AFLTIQEGCDKFCTFCVVPYTRGIEIS 204
           K     +  VE K E L +       +R  T   +++I  GC+  CTFC+VP+ RG E  
Sbjct: 125 K-----EAQVEIK-ESLEVFPSTLPTRRESTHSGWVSISVGCNNTCTFCIVPHLRGKEKD 178

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R    ++ E   L   GV E+TLLGQNVN++  +  D  +  F  LL ++ +++G+ R+R
Sbjct: 179 RRPGDILAEVEALAAQGVIEVTLLGQNVNSYGTEFRD--RQAFGKLLRAVGKVQGIERVR 236

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +T+ HP   SD +I A  +   +MP LH+P+QSGSD +LK+M R +    +  I+D++R 
Sbjct: 237 FTSPHPAAFSDDVIDAMAETPTVMPQLHMPLQSGSDTVLKAMRRSYRTKRFMGILDKVRE 296

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             P  +I++D IVGFPGET++DF+ TMD+V +  + QA++F+YS R GTP + M  Q+ +
Sbjct: 297 RIPHASITTDIIVGFPGETEEDFQQTMDVVREARFTQAYTFQYSIRPGTPAAAMENQIPK 356

Query: 385 NV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSVVL 440
           +V   + ERL+ LQ ++  ++   N ACVG  +EVLI      + G++ GR+   + V +
Sbjct: 357 DVVQERFERLVALQDEIAWEE---NKACVGNQVEVLINTGPDAQHGRMSGRARDNRLVHV 413

Query: 441 NSK---NHNIGDIIKVRITDVK 459
            ++   +   GDI+   +T+ K
Sbjct: 414 RAQEGLDARPGDIVTATVTEAK 435


>gi|302522287|ref|ZP_07274629.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Streptomyces sp. SPB78]
 gi|302431182|gb|EFL02998.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Streptomyces sp. SPB78]
          Length = 506

 Score =  296 bits (758), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 173/454 (38%), Positives = 263/454 (57%), Gaps = 29/454 (6%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDD---ADLIVLNTCHIREKAAEKVYSF 83
           + +++YGCQMNV+DS R+  +    GY R     +   AD++V NTC +RE A  ++Y  
Sbjct: 14  YEIRTYGCQMNVHDSERLAGLLEGAGYVRAPEGAEDGGADVVVFNTCAVRENADNRLYGN 73

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR+   K  R      + + V GC+AQ + + I+ R+P V+VV G     +LP LLERA
Sbjct: 74  LGRLAPKKTERP----GMQIAVGGCLAQKDRQTIVDRAPWVDVVFGTHNIGKLPVLLERA 129

Query: 144 RFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           R  +   V+   S+E     L        R+    A++++  GC+  CTFC+VP  RG E
Sbjct: 130 RVQEEAQVEIAESLEAFPSTLPT-----RRESAYAAWVSVSVGCNNTCTFCIVPALRGKE 184

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLV 261
             R    ++ E   L+  GV EITLLGQNVNA+   G D G++  FS LL +   I+GL 
Sbjct: 185 KDRRPGDILAEVEALVAEGVSEITLLGQNVNAY---GSDIGDREAFSKLLRACGGIEGLE 241

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+T+ HPRD +D +I A  +   +MP LH+P+QSGSD +L++M R +    Y  II++
Sbjct: 242 RVRFTSPHPRDFTDDVIAAMAETPNVMPQLHMPLQSGSDSVLRAMRRSYRQDRYLGIIEK 301

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R+  PD AIS+D IVGFPGET++DF  T+ +V +  +A AF+F+YS R GTP + M  Q
Sbjct: 302 VRAAIPDAAISTDIIVGFPGETEEDFEQTLHVVREARFAAAFTFQYSKRPGTPAAEMENQ 361

Query: 382 VDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKG---KLVGRSPW 434
           + + V   + ERL+ LQ+++  ++   N   VG+ ++V++ E  G++ G   +L GR+P 
Sbjct: 362 IPKEVVQKRYERLVALQEEISWEE---NKKQVGRTLDVMVAEGEGRKDGATQRLSGRAPD 418

Query: 435 LQSVVLNSKNHNI--GDIIKVRITDVKISTLYGE 466
            + V        +  GD++ V IT      L  E
Sbjct: 419 NRLVHFTKPQDPVRPGDVVTVDITYAAPHHLLAE 452


>gi|227504866|ref|ZP_03934915.1| possible tRNA 2-methylthioadenine synthetase [Corynebacterium
           striatum ATCC 6940]
 gi|227198557|gb|EEI78605.1| possible tRNA 2-methylthioadenine synthetase [Corynebacterium
           striatum ATCC 6940]
          Length = 537

 Score =  296 bits (758), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 158/417 (37%), Positives = 240/417 (57%), Gaps = 22/417 (5%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           + V+++GCQMNV+DS R+  +    GY       + DLIV NTC +RE A +++Y  LG 
Sbjct: 37  YEVRTFGCQMNVHDSERISGLLEEAGYVAAAEEQEPDLIVFNTCAVRENADKRLYGTLGA 96

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           ++  K +       + + V GC+AQ + + +L  +P V+ V G      LP LLERAR  
Sbjct: 97  LKKTKENHPG----MQIAVGGCLAQKDKDTVLDNAPWVDAVFGTHNMAALPTLLERARHN 152

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
               +    + D  E    V     R+     ++++  GC+  CTFC+VP  RG E  R 
Sbjct: 153 D---EAQVEIVDSLEAFPSVLPA-KRESAYAGWVSVSVGCNNTCTFCIVPSLRGKEEDRR 208

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAW----RGKGLDGEKCTFSDLLYSLSEIKGLVR 262
              ++ E + L+D GV E+TLLGQNVNA+        L  +K  FS LL  + +I+GL R
Sbjct: 209 PGDILAEVQALVDQGVSEVTLLGQNVNAYGVNFADPDLPRDKFAFSKLLREVGKIEGLER 268

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LR+T+ HP + +  +I A  +   + P LH+P+QSGSDRILK M R + + ++  I+D +
Sbjct: 269 LRFTSPHPAEFTSDVIDAMAETPAVCPQLHMPLQSGSDRILKEMRRSYRSKKFLAILDEV 328

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R   P  AI++D IVGFPGET++DF ATMD+V +  +A AF+F+YSPR GTP + M +QV
Sbjct: 329 REKMPHAAITTDIIVGFPGETEEDFEATMDVVKRARFASAFTFQYSPRPGTPAAEMEQQV 388

Query: 383 DENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG----KLVGRS 432
            +++   + ERL+ LQ  ++ ++   N   +G   E+L++  G  K     +L GRS
Sbjct: 389 PKHIVQERFERLVALQDSIQAEE---NAKLIGTDAELLVQAEGGRKAGETHRLTGRS 442


>gi|254442609|ref|ZP_05056085.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Verrucomicrobiae
           bacterium DG1235]
 gi|198256917|gb|EDY81225.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Verrucomicrobiae
           bacterium DG1235]
          Length = 461

 Score =  296 bits (758), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 163/451 (36%), Positives = 262/451 (58%), Gaps = 12/451 (2%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R ++K+YGCQMN  DS ++      +GY  V++  DAD+++LNTC +R++A +K     G
Sbjct: 11  RVYIKTYGCQMNERDSEQVASSLRDRGYSIVDTEYDADVVLLNTCSVRDQAEQKAIGKAG 70

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA-- 143
            ++  K    K+  + L+ V GC+AQ  G E+  R P +++VVG Q ++R+P+ L+    
Sbjct: 71  YLKKHK----KDNPNFLIGVMGCMAQNRGAELFDRLPDLDLVVGTQKFHRVPDHLDNMIQ 126

Query: 144 ---RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
                G R        E+   + +I D    +K  V AF++I +GC+  C FC+VP TRG
Sbjct: 127 SMNGQGPRPSSVLDLGEEAGSQNTIRDH-IGKKGQVQAFVSIMQGCNMNCAFCIVPKTRG 185

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW--RGKGLDGEKCTFSDLLYSLSEIK 258
            E +R + ++VDE   L ++GV EITLLGQ V ++  R   +   K  F  LL  + EI 
Sbjct: 186 RERARPIQEIVDEVIGLAESGVKEITLLGQIVTSYGRRDFPVVNGKSPFVQLLEKIEEIP 245

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           G+ R+R+T+ HPR     L++A+ DL  L  Y+HLP+Q+G ++ L++MNR +T   YR+I
Sbjct: 246 GIERIRFTSPHPRGFKQDLVEAYRDLSKLCEYVHLPLQAGCNKTLRAMNRPYTKERYREI 305

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           +D +R++ P +  S+D IVGFPGET+ DF  T  + D I +  A+ FKYS R GTP   M
Sbjct: 306 VDSLRAMVPSMYFSTDIIVGFPGETEADFNETAAMFDDIAFDMAYIFKYSIRTGTPAETM 365

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSV 438
            +Q+ +  K  R   L   L +  ++ N+  VG   +VL+E   K+  K VG +   ++ 
Sbjct: 366 PDQIPQEEKERRNQVLLDLLHKHSLARNEGLVGTTEQVLVEGPAKKGDKYVGHTRGWRNA 425

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
           + ++    +G ++ ++I     ST+YG+LV+
Sbjct: 426 IFDANERLVGQLVDLKIDRATASTVYGDLVL 456


>gi|108799124|ref|YP_639321.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Mycobacterium
           sp. MCS]
 gi|123178924|sp|Q1BA19|MIAB_MYCSS RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|108769543|gb|ABG08265.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Mycobacterium sp. MCS]
          Length = 525

 Score =  296 bits (758), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 164/433 (37%), Positives = 254/433 (58%), Gaps = 35/433 (8%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           V + + V++YGCQMNV+DS R+  +    GY R     DAD++V NTC +RE A  K+Y 
Sbjct: 12  VARTYQVRTYGCQMNVHDSERLAGLLEDAGYRRAADGADADVVVFNTCAVRENADNKLYG 71

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            L  +   K S  +    + + V GC+AQ + + +LRR+P V+VV G      LP LLER
Sbjct: 72  NLSHLAPRKRSEPQ----MQIAVGGCLAQKDRDAVLRRAPWVDVVFGTHNIGSLPTLLER 127

Query: 143 ARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           AR  +   V+   ++++    L        R+     +++I  GC+  CTFC+VP  RG 
Sbjct: 128 ARHNRAAQVEIAEALQEFPSTLPAA-----RESAYAGWVSISVGCNNTCTFCIVPSLRGK 182

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW---------------RGKGLDGEKCT 246
           E+ R    V+ E + L+D GV E+TLLGQNVNA+                 + +   +  
Sbjct: 183 EVDRRPGDVLAEIQTLVDQGVLEVTLLGQNVNAYGVSFAADERLREDPRMWQSVPRNRGA 242

Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306
           F++LL +   I GL R+R+T+ HP + +D +I+A  +   + P LH+P+QSGSDRIL++M
Sbjct: 243 FAELLRACGRIDGLERVRFTSPHPAEFTDDVIEAMAETPNVCPALHMPLQSGSDRILRAM 302

Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
            R + A +Y  IIDR+R+  PD AI++D IVGFPGET++DF+AT+D+V    ++ AF+F+
Sbjct: 303 RRSYRAEKYLGIIDRVRAAIPDAAITTDLIVGFPGETEEDFQATLDVVAASRFSSAFTFQ 362

Query: 367 YSPRLGTPGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK 423
           YS R GTP ++M  Q+ + V +E   RL+ LQ+++  ++   N A VG+ +E+L+     
Sbjct: 363 YSKRPGTPAADMPGQLPKAVVSERYQRLIELQERISLEE---NQAQVGRTLELLVATGEG 419

Query: 424 EK----GKLVGRS 432
            K     +L GR+
Sbjct: 420 RKDAATARLSGRA 432


>gi|307329234|ref|ZP_07608399.1| RNA modification enzyme, MiaB family [Streptomyces violaceusniger
           Tu 4113]
 gi|306885133|gb|EFN16154.1| RNA modification enzyme, MiaB family [Streptomyces violaceusniger
           Tu 4113]
          Length = 500

 Score =  296 bits (757), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 173/454 (38%), Positives = 265/454 (58%), Gaps = 29/454 (6%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVN---SMDDADLIVLNTCHIREKAAEKVYSF 83
           + +++YGCQMNV+DS R+  +    G+ R        +AD++V NTC +RE A  ++Y  
Sbjct: 9   YEIRTYGCQMNVHDSERLSGLLEEAGFVRATEGTGEGEADIVVFNTCAVRENADNRLYGN 68

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR+  +K  R      + + V GC+AQ + + I++++P V+VV G      LP LLERA
Sbjct: 69  LGRLAPIKARRP----GMQIAVGGCLAQKDRDTIVKKAPWVDVVFGTHNIGSLPVLLERA 124

Query: 144 RFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           R  +   V+   S+E     L        R+    A+++I  GC+  CTFC+VP  RG E
Sbjct: 125 RVQEEAQVEIAESLEAFPSTLPT-----RRESAYAAWVSISVGCNNTCTFCIVPALRGKE 179

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLV 261
             R    ++ E   L+  GV EITLLGQNVNA+   G D G++  FS LL +  +++GL 
Sbjct: 180 KDRRPGDILAEVETLVAEGVTEITLLGQNVNAY---GSDIGDREAFSKLLRACGKVEGLE 236

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+T+ HPRD +D +I A  + + +MP LH+P+QSGSD +LK+M R +    Y  II++
Sbjct: 237 RVRFTSPHPRDFTDDVISAMAETENVMPQLHMPLQSGSDTVLKAMRRSYRQERYLGIIEK 296

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R+  PD AIS+D IVGFPGET++DF  T+ +V +  +AQAF+F+YS R GTP + M  Q
Sbjct: 297 VRAAMPDAAISTDIIVGFPGETEEDFEQTLHVVREARFAQAFTFQYSKRPGTPAAEMDGQ 356

Query: 382 VDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKG---KLVGRSPW 434
           V + V   + ERL+ LQ+++  ++   N   +G+ +EVL+ E  G++     +L GR+  
Sbjct: 357 VPKAVVQERYERLVALQEEISWEE---NKKQIGRTLEVLVAEGEGRKDDATRRLSGRAAD 413

Query: 435 LQSVVLNSKNHNI--GDIIKVRITDVKISTLYGE 466
            + V        +  GD++ V IT      L  E
Sbjct: 414 NRLVHFARPEEPVRPGDVVTVDITYAAPHHLLAE 447


>gi|295696236|ref|YP_003589474.1| RNA modification enzyme, MiaB family [Bacillus tusciae DSM 2912]
 gi|295411838|gb|ADG06330.1| RNA modification enzyme, MiaB family [Bacillus tusciae DSM 2912]
          Length = 484

 Score =  296 bits (757), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 173/459 (37%), Positives = 275/459 (59%), Gaps = 22/459 (4%)

Query: 14  VSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIR 73
           ++Q V    V +R+++++YGCQMN +DS  M  M    GY   ++ ++ADLI+ NTC +R
Sbjct: 30  MAQAVPAVGVGKRYWIRTYGCQMNEHDSEIMAGMLQEMGYRPASAPEEADLILFNTCAVR 89

Query: 74  EKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRS--PIVNVVVGPQ 131
           E A +KV+  +GRI+ LK    +   +LL+ + GC+AQ E      R   P V++V G  
Sbjct: 90  ENAEDKVFGEIGRIKPLK----RRHPELLLGLCGCMAQEEKVRQFVRDTFPHVDLVFGTH 145

Query: 132 TYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCT 191
             ++LPEL+ +A   +  V   ++V D+  ++ + +    R+ GV A++ IQ GC+K+CT
Sbjct: 146 NLHQLPELVVQAMASQETV---FAVWDRPGQV-VENLPKLRQDGVKAWVNIQYGCNKYCT 201

Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLL 251
           +C+VP+TRG E SR    VV E ++L + G+ E+TLLGQNVN +   GLD     F+DLL
Sbjct: 202 YCIVPFTRGRERSRLPEDVVAEVKQLAEEGIREVTLLGQNVNDY---GLDLGDVDFADLL 258

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
             ++ I G+ R+R+TTS+P + +D LI      + +  ++HLPVQSG++RILK MNR +T
Sbjct: 259 QQVARIPGIERVRFTTSNPWNFTDKLIDVIAAEEAICEHIHLPVQSGNNRILKRMNRGYT 318

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
              Y Q+++RIR   P +++++D IVGFPGET+++F+ T+DLV  + +  AF+F YS R 
Sbjct: 319 RETYLQLVERIRDRIPGVSLTTDIIVGFPGETEEEFQDTLDLVRTVQFDNAFTFLYSRRQ 378

Query: 372 GTPGSNMLEQVDENVKAERLLCLQKKLREQQVS----FNDACVGQIIEVLIEKHGKEKGK 427
           GT  + M +      K +RL    ++L E Q +    +++  VG+  +VL+E   K   +
Sbjct: 379 GTAAARMKDDTSLEAKKDRL----RRLNELQAAISRRYHEQLVGKTEDVLVEGESKTNPE 434

Query: 428 -LVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYG 465
            L GR+   + V+L      IG  I V+I   +   L G
Sbjct: 435 ILAGRTRTNRLVLLQGSRELIGRTIPVQIVGAQTWLLRG 473


>gi|153823302|ref|ZP_01975969.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Vibrio cholerae B33]
 gi|126519166|gb|EAZ76389.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Vibrio cholerae B33]
          Length = 313

 Score =  296 bits (757), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 149/317 (47%), Positives = 211/317 (66%), Gaps = 6/317 (1%)

Query: 109 VAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG-KRVVDTDYSVEDKFERLSIVD 167
           VA  EG+ I  R+P V+V+ GPQT +RLPE++++++     V+D  +   +KF+RL    
Sbjct: 1   VATQEGDSIRDRAPYVDVIFGPQTLHRLPEMIKQSQTSDAPVMDISFPEIEKFDRLP--- 57

Query: 168 GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITL 227
               R  G TAF++I EGC K+CT+CVVPYTRG E+SR +  V+ E  +L + GV E+ L
Sbjct: 58  --EPRAEGPTAFVSIMEGCSKYCTYCVVPYTRGEEVSRPMDDVLFEIAQLAEQGVREVNL 115

Query: 228 LGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL 287
           LGQNVNA+RG   DG  C+F++LL  ++ I G+ R+R+TTSHP + +D +I  + D   L
Sbjct: 116 LGQNVNAYRGATHDGGICSFAELLRLVATIDGIDRIRFTTSHPLEFTDDIIAVYEDTPEL 175

Query: 288 MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDF 347
           + +LHLPVQSGSDRIL  M R HTA EY+ II ++R  RPDI ISSDFIVGFPGETD DF
Sbjct: 176 VSFLHLPVQSGSDRILTMMKRPHTAIEYKSIIRKLRKARPDIQISSDFIVGFPGETDKDF 235

Query: 348 RATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFND 407
           + TM L+  + +  +FSF +SPR GTP ++    + E VK ERL  LQ+++  Q + ++ 
Sbjct: 236 QDTMKLIRDVDFDMSFSFIFSPRPGTPAADYPCDLSEEVKKERLYELQQQINSQAMRYSR 295

Query: 408 ACVGQIIEVLIEKHGKE 424
             +G    +L+E   K+
Sbjct: 296 LMLGTEQRILVEGPSKK 312


>gi|224476428|ref|YP_002634034.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus
           carnosus subsp. carnosus TM300]
 gi|222421035|emb|CAL27849.1| putative radical SAM superfamily protein [Staphylococcus carnosus
           subsp. carnosus TM300]
          Length = 513

 Score =  296 bits (757), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 169/446 (37%), Positives = 261/446 (58%), Gaps = 15/446 (3%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           FF+K++GCQMN +D+  M  +F + GY     +  AD+I+LNTC IRE A  KV+S +G 
Sbjct: 69  FFIKTFGCQMNAHDTEVMAGIFEALGYTLAEDILKADVILLNTCAIRENAENKVFSEIGN 128

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           +++LK  R     D L+ V GC++Q E    +IL+    V+++ G    ++LPE+LE A 
Sbjct: 129 LKHLKRDR----PDCLIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHKLPEILEEAY 184

Query: 145 FGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             K +V   +S E D  E L  V   Y       A++ I  GCDKFCT+C+VP+TRG E 
Sbjct: 185 MSKAMVIDVWSKEGDVIENLPKVRDDY-----FKAWVNIMYGCDKFCTYCIVPFTRGKER 239

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR    ++DE R L   G  EITLLGQNVN++ GK L   +    DL   +S+I  + R+
Sbjct: 240 SRRPQDIIDEVRDLARQGYQEITLLGQNVNSY-GKDLKDIEYDLGDLFEDISKI-DIPRV 297

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+TTSHP D +D +I        ++P++HLPVQSG+D +LK M R++T   Y  +++RI+
Sbjct: 298 RFTTSHPWDFTDHMIDVIAKGGNIVPHIHLPVQSGNDAVLKIMGRKYTRESYLDLVNRIK 357

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           +  PD+A+++D IVG+P ET++ F+ T+ L D++ +  A+++ YS R GTP + M + V+
Sbjct: 358 TAIPDVALTTDIIVGYPNETEEQFQETLSLYDEVEFEHAYTYLYSQRDGTPAARMKDNVE 417

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVLNS 442
           + VK +RL  L +K+            GQ++ VL E   K+  + L G +   + V    
Sbjct: 418 KEVKKDRLQRLNQKVGYYSERALKGYEGQVVTVLCEGSSKKDNEVLAGYTDKNKLVNFRG 477

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
               IG ++ V+I + K  +L G  +
Sbjct: 478 PKEVIGKLVDVKIDEAKQYSLNGTFL 503


>gi|225021202|ref|ZP_03710394.1| hypothetical protein CORMATOL_01214 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224945935|gb|EEG27144.1| hypothetical protein CORMATOL_01214 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 526

 Score =  296 bits (757), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 162/449 (36%), Positives = 262/449 (58%), Gaps = 27/449 (6%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           + V+++GCQMNV+DS R+  +    GY+ V + +  DLIV NTC +RE A  ++Y  LG 
Sbjct: 26  YEVRTFGCQMNVHDSERLSGLLEDAGYQPVVAGNTPDLIVFNTCAVRENADMRLYGTLGS 85

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           +R++K         + + V GC+AQ + + +++++P V+VV G      LP LL+RA   
Sbjct: 86  LRSVKERH----PGMQIAVGGCLAQKDKDAVVKKAPWVDVVFGTHNIGSLPALLKRASHN 141

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
            +    +  + D  E+   V     R+     ++++  GC+  CTFC+VP  RG EI R 
Sbjct: 142 HQA---EVEIVDALEQFPSVLPA-KRESAYAGWVSVSVGCNNTCTFCIVPSLRGKEIDRR 197

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAW----RGKGLDGEKCTFSDLLYSLSEIKGLVR 262
              ++ E + L+D GV E+TLLGQNVNA+       GL  ++  FS LL +  EI GL R
Sbjct: 198 PGDILAEVQALVDQGVVEVTLLGQNVNAYGVNFADPGLPRDRSAFSRLLRACGEITGLER 257

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+T+ HP + +  +I A  +   + P LH+P+QSGSD++LK M R +   ++  I+D +
Sbjct: 258 VRFTSPHPAEFTSDVIDAMAETPTVCPQLHMPLQSGSDKVLKEMRRSYRTKKFLAILDEV 317

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R   P  AI++D IVGFPGET++DF+AT+D+V+K  +  AF+F+YSPR GTP +   +QV
Sbjct: 318 RQKIPHAAITTDIIVGFPGETEEDFQATLDVVEKARFTSAFTFQYSPRPGTPAAEYEQQV 377

Query: 383 DENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG----KLVGRS--- 432
            + V   + ERL+ LQ+++  ++   N   V   +E+L++  G +K     ++ GR+   
Sbjct: 378 PKEVVQERYERLIALQERVCLEE---NQKLVNTEVELLVQADGGKKNAKTHRMTGRARDG 434

Query: 433 PWLQSVVLNSKNHNI--GDIIKVRITDVK 459
             +    + S + +I  GDII   +T+ K
Sbjct: 435 RLVHFHPVGSIDQSIRPGDIITTTVTEAK 463


>gi|160915264|ref|ZP_02077477.1| hypothetical protein EUBDOL_01272 [Eubacterium dolichum DSM 3991]
 gi|158433063|gb|EDP11352.1| hypothetical protein EUBDOL_01272 [Eubacterium dolichum DSM 3991]
          Length = 480

 Score =  296 bits (757), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 171/447 (38%), Positives = 264/447 (59%), Gaps = 18/447 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +++++++YGCQ N  DS  +  +  S  +   +   +AD+I+LNTC IR+ A +KV   L
Sbjct: 44  KKYYLRTYGCQANERDSETLAGILESMQFTPCSEPSEADVILLNTCAIRKNAEDKVLGEL 103

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELL-E 141
           G ++ LK+ +     DL+  V GC+AQ E     +L +   V ++ G    +RLPELL E
Sbjct: 104 GSLKRLKSDK----PDLIFAVCGCMAQEEEIVTLLLEKYRHVQLIFGTHNIHRLPELLYE 159

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
               GKRVV+      +  E L +   G ++     A++ I  GCDKFCT+C+VPYTRG 
Sbjct: 160 VMSEGKRVVEVLSKEGEVIENLPVRRFGKHK-----AWVNIMYGCDKFCTYCIVPYTRGK 214

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-RGKGLDGEKCTFSDLLYSLSEIKGL 260
           E SR++  ++DE R L + G  E+TLLGQNVN++ +  G+ G    F+ LL   ++I G+
Sbjct: 215 ERSRAMEDILDEVRILKEEGYKEVTLLGQNVNSYGKDAGIVG---GFASLLEETAKI-GI 270

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+TTSHP D +D +I      D +MP++HLPVQSG   ILK M RR+T  +Y  +  
Sbjct: 271 ERIRFTTSHPWDFTDEMIDVIARYDNIMPFIHLPVQSGDSEILKIMGRRYTREQYLTLFH 330

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           +I+   P+ AIS+D I+GFP E+++ F  T+ LVD+  +  AF+F YSPR GTP + M +
Sbjct: 331 KIKERMPNCAISTDIIIGFPNESEEQFENTLSLVDECQFDNAFTFIYSPREGTPAARMAD 390

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GRSPWLQSVV 439
            V   VK  RL  L ++  +     NDA +G+ + VL++   K+  +++ G +   + V 
Sbjct: 391 NVSLEVKQHRLARLNERWNQYAKLKNDAYLGKTVRVLVDGASKKNDQIMSGYTETNKLVN 450

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGE 466
             +K+   GDI+ V+IT  K  +L GE
Sbjct: 451 FVAKDAKAGDIVTVKITGCKTFSLDGE 477


>gi|256832276|ref|YP_003161003.1| RNA modification enzyme, MiaB family [Jonesia denitrificans DSM
           20603]
 gi|256685807|gb|ACV08700.1| RNA modification enzyme, MiaB family [Jonesia denitrificans DSM
           20603]
          Length = 534

 Score =  295 bits (756), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 168/423 (39%), Positives = 261/423 (61%), Gaps = 30/423 (7%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERV----NSMDDADLIVLNTCHIREKAAEK 79
           P+ + VK+ GCQMNV+DS  M  +    GY +     ++  DAD++V+NTC +RE AA K
Sbjct: 15  PRTYTVKTLGCQMNVHDSEHMAGLLEQAGYVKAPDGSDATGDADIVVINTCAVRENAANK 74

Query: 80  VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL 139
           +Y  LG++  +K  R K G  + + V GC+AQ +   I+ R+P V+VV G      LP L
Sbjct: 75  LYGQLGQLAAIK--RTKPG--MQIAVGGCLAQKDRGVIVERAPWVDVVFGTHNLDVLPVL 130

Query: 140 LERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTA-FLTIQEGCDKFCTFCVVPY 197
           LERAR  +   V+   S++     L        R+  V A +++I  GC+  CTFC+VP+
Sbjct: 131 LERARHNEEAQVEIAESLQVFPSTLP------TRRESVYAGWVSISVGCNNTCTFCIVPH 184

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSE 256
            RG E  R   Q++ E   L+  G  E+TLLGQNVN++   G++ G++  F+ LL +  +
Sbjct: 185 LRGKERDRRPGQILAEVEALVAAGAVEVTLLGQNVNSY---GVEFGDRGAFAKLLRACGD 241

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           I+GL R+R+T+ HP   +D +I+A      +MP LH+P+QSGSDRIL++M R + + ++ 
Sbjct: 242 IEGLERVRFTSPHPAAFTDDVIEAMAQTPNVMPSLHMPLQSGSDRILRAMRRSYRSEKFL 301

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
            I+DR+R+  PD AI++D IVGFPGET++DF+AT+D+V +  +A AF+F+YSPR GTP +
Sbjct: 302 GILDRVRTAMPDAAITTDIIVGFPGETEEDFQATLDVVRQSRFASAFTFQYSPRPGTPAA 361

Query: 377 NMLEQVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKE---KGKLV 429
            +  Q+ + V   + ERLL  Q ++   +   + A VG+ +EVL+ E  G++     +L 
Sbjct: 362 TLDGQLPKEVVQERYERLLAAQDEISAAE---SQALVGRTVEVLVAESDGRKDDANHRLT 418

Query: 430 GRS 432
           GR+
Sbjct: 419 GRA 421


>gi|291566663|dbj|BAI88935.1| tRNA-i(6)A37 modification enzyme MiaB [Arthrospira platensis
           NIES-39]
          Length = 452

 Score =  295 bits (756), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 172/455 (37%), Positives = 272/455 (59%), Gaps = 23/455 (5%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+ + + ++GCQMN  DS RM  +    G   V   + AD+++ NTC IR+ A +KVYS+
Sbjct: 5   PRHYHITTFGCQMNKADSERMAGILDEMGLTFVEDPNQADIVLYNTCTIRDNAEQKVYSY 64

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR    +  R +E  +L ++VAGCVAQ EGE +LRR P +++V+GPQ   RL +LLE+ 
Sbjct: 65  LGR----QAKRKQENPNLTLIVAGCVAQQEGEALLRRVPELDLVMGPQHANRLQDLLEQV 120

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKR--GVTAFLTIQEGCDKFCTFCVVPYTRGI 201
             G +VV T        E ++IV+     +R   +TA++ +  GC++ CT+CVVP  RG 
Sbjct: 121 FEGSQVVAT--------EPINIVEDITKPRRDSNITAWVNVIYGCNERCTYCVVPNVRGT 172

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG------EKCTFSDLLYSLS 255
           E SR+   +  E  +L   G  E+TLLGQN++A+ G+ L G       + T +DLLY + 
Sbjct: 173 EQSRTPEAIRAEMEELARAGYKEVTLLGQNIDAY-GRDLPGSTPDGRHQHTLTDLLYYVH 231

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
           +I G+ R+R+ TSHPR  ++ LI+A  +L  +  + H+P QSG + +L++M R +T  +Y
Sbjct: 232 DIPGIERIRFATSHPRYFTERLIRACAELPKVCEHFHIPFQSGDNDVLRAMARGYTHEKY 291

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
           R+II+ IR   PD +IS+D IVGFPGET+  F  T+ LVD I +    +  YSPR GT  
Sbjct: 292 RRIINTIREYIPDASISADAIVGFPGETEAQFENTLKLVDDIAFDLLNTAAYSPRPGTGA 351

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSPW 434
           +    Q+ E VKA+RL  L + +  + +  ++    +I EVL+E  + K+  +++GR+  
Sbjct: 352 ALWENQLSEEVKADRLQRLNRLVNVKAMERSERYRDRIEEVLVEGTNPKDPSQVMGRTRG 411

Query: 435 LQSVVLNSKNHNI-GDIIKVRITDVKISTLYGELV 468
            +          + G+++KV+I +V+  +L GE +
Sbjct: 412 NRLTFFKGNLAELSGELVKVKIIEVRAFSLTGEPI 446


>gi|313893403|ref|ZP_07826975.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Veillonella sp. oral
           taxon 158 str. F0412]
 gi|313442044|gb|EFR60464.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Veillonella sp. oral
           taxon 158 str. F0412]
          Length = 438

 Score =  295 bits (756), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 164/449 (36%), Positives = 258/449 (57%), Gaps = 21/449 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + +++ +YGCQMN  DS R+     S GY     ++ ADLI+LNTC +RE A  KVY  +
Sbjct: 2   KSYYIYTYGCQMNTADSERLSHQLESVGYTPTEDVETADLILLNTCAVRENAETKVYGRI 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           G +  LK    ++  +L++ V GC+AQ    E+ +R+P +++V+G      + E++E  +
Sbjct: 62  GELMRLK----RKNKNLILAVTGCMAQKNQAEMFKRAPHIDIVLGTHNIQHINEMIEEVQ 117

Query: 145 FGKR---VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
            G      VD D +V  + E  +  +G +       A++ I  GC+KFCT+C+VP+ RG 
Sbjct: 118 RGHTHQISVDMDNTVLPELE--AKPNGTF------YAWVPIMNGCNKFCTYCIVPHVRGR 169

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT-FSDLLYSLSEIKGL 260
           EISR +  +V E   L   G  EITLLGQNVN++   GLD +  T F  L+ +L  I G+
Sbjct: 170 EISRPVEAIVKEVTDLGAKGFKEITLLGQNVNSY---GLDFKDGTDFGTLIDALDGIPGI 226

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+RY TSHP+DM+  +I A G    ++ +LHLP+QSGSDRILK MNR +T   Y++++ 
Sbjct: 227 ERIRYMTSHPQDMTKSMIDALGRSSNIVTHLHLPIQSGSDRILKKMNRHYTVEHYKELLS 286

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
             R    ++ +++D IVGFPGET++DF+AT+ L+  + Y  A++F YS R GTP + M +
Sbjct: 287 YCREKIKNVVVTTDIIVGFPGETEEDFQATLQLLKDVRYDMAYTFIYSKRSGTPAATMDD 346

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSPWLQSVV 439
           Q+ E VK  RL  L     E     N    GQ+ ++++E    +++    GR+   + V+
Sbjct: 347 QIPEEVKRVRLQTLMDVQNEISYELNKPMEGQVFDIIVEGPSPRDEDMWFGRTSGNKMVL 406

Query: 440 LNSKNH-NIGDIIKVRITDVKISTLYGEL 467
               +  +IG+ +   I   +    YG +
Sbjct: 407 FPKDDSLSIGETVPAYIDKAQTWVCYGTI 435


>gi|260910435|ref|ZP_05917107.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella sp. oral taxon
           472 str. F0295]
 gi|260635511|gb|EEX53529.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella sp. oral taxon
           472 str. F0295]
          Length = 440

 Score =  295 bits (756), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 163/451 (36%), Positives = 261/451 (57%), Gaps = 20/451 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ ++++YGCQMNV DS  +  +    GYE      +AD I +NTC +RE A  K+Y+ L
Sbjct: 2   KKLYIETYGCQMNVADSEVVAAVMQMAGYEMCQDEAEADAIFMNTCSVRENAENKIYNRL 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             +    ++  K+G  +++ V GC+A+   ++++       +V GP +Y  LP+++ +A 
Sbjct: 62  DTL----HAEQKKGRKVILGVLGCMAERVKDDLIENHH-AQLVAGPDSYLNLPDMIAQAE 116

Query: 145 FGKRVVDTDYSVEDKF-----ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
            G + +D   S  + +     +R+++          ++ F++I  GCD FC +C+VPYTR
Sbjct: 117 AGNKAIDIALSKTETYKDIVPQRVALAK--------ISGFVSIMRGCDNFCHYCIVPYTR 168

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G E SR +  +++E R L   G  E+TLLGQNVN++R    +G+   F  LL  ++E   
Sbjct: 169 GRERSRDVDSILNEVRNLQQQGYKEVTLLGQNVNSYRFVNDEGQTVDFPQLLRLVAEAVP 228

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
            +R+R++T HP+DMSD  ++   ++  +  ++HLP+QSGSD++LK MNR++T   Y   +
Sbjct: 229 TMRIRFSTPHPKDMSDATLRVIAEVPNVCRHIHLPIQSGSDKVLKLMNRKYTVEWYLSRV 288

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
             IR + PD  +S+D  VG+ GET+ D   ++ ++ ++GY  AF FKYS R GT  S  L
Sbjct: 289 KAIRELVPDCGLSTDIFVGYHGETEADHEESLRIMREVGYDSAFMFKYSERPGTYASKHL 348

Query: 380 -EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQS 437
            + V E+VK  RL  L     E     N A VG I EVL+E   K  + +L GR+   + 
Sbjct: 349 PDDVPEDVKIRRLNELIMVQNENSARANHAEVGNIREVLVEGPSKRSREQLCGRTEQNKM 408

Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           VV +  NH+IG+ +KVRIT    +TL GE V
Sbjct: 409 VVFDKGNHHIGEYVKVRITGSTSATLLGEAV 439


>gi|153213858|ref|ZP_01949064.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Vibrio cholerae 1587]
 gi|124115692|gb|EAY34512.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Vibrio cholerae 1587]
          Length = 375

 Score =  295 bits (756), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 155/346 (44%), Positives = 223/346 (64%), Gaps = 7/346 (2%)

Query: 125 NVVVGPQTYYRLPELLERARFG-KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQ 183
           +V+ GPQT +RLPE++++++     V+D  +   +KF+RL        R  G TAF++I 
Sbjct: 1   DVIFGPQTLHRLPEMIKQSQTSDAPVMDISFPEIEKFDRLP-----EPRAEGPTAFVSIM 55

Query: 184 EGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
           EGC K+CT+CVVPYTRG E+SR +  V+ E  +L + GV E+ LLGQNVNA+RG   DG 
Sbjct: 56  EGCSKYCTYCVVPYTRGEEVSRPMDDVLFEIAQLAEQGVREVNLLGQNVNAYRGATHDGG 115

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
            C+F++LL  ++ I G+ R+R+TTSHP + +D +I  + D   L+ +LHLPVQSGSDRIL
Sbjct: 116 ICSFAELLRLVATIDGIDRIRFTTSHPLEFTDDIIAVYEDTPELVSFLHLPVQSGSDRIL 175

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
             M R HTA EY+ II ++R  RPDI ISSDFIVGFPGETD DF+ TM L+  + +  +F
Sbjct: 176 TMMKRPHTAIEYKSIIRKLRKARPDIQISSDFIVGFPGETDKDFQDTMKLIRDVDFDMSF 235

Query: 364 SFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK 423
           SF +SPR GTP ++    + E VK ERL  LQ+++  Q + ++   +G    +L+E   K
Sbjct: 236 SFIFSPRPGTPAADYPCDLSEEVKKERLYELQQQINSQAMRYSRLMLGTEQRILVEGPSK 295

Query: 424 EK-GKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           +   +L GR+   + V        IG  + V+I DV  ++L GEL+
Sbjct: 296 KDLMELRGRTENNRVVNFEGSPDLIGQFVDVKIVDVFPNSLRGELL 341


>gi|325831353|ref|ZP_08164607.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Eggerthella sp. HGA1]
 gi|325486607|gb|EGC89055.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Eggerthella sp. HGA1]
          Length = 459

 Score =  295 bits (756), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 172/459 (37%), Positives = 265/459 (57%), Gaps = 35/459 (7%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           F ++++GCQMN +DS R+  M    G  +V++++DAD++   TC +RE A  ++Y   G+
Sbjct: 10  FCIRTFGCQMNKHDSERIAGMLEGMGALQVDAIEDADIVAFMTCCVREAADTRLY---GQ 66

Query: 87  IRNLKNSRIKEGGDL---LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           + +LKN  ++ G  L   +V V GC+ Q +GE+++     ++VV G      LP LLE A
Sbjct: 67  VASLKNVPLRAGTPLSKRIVAVGGCIGQRDGEKLVDELKHLDVVFGTHNLGSLPRLLEAA 126

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYN--------RKRGVTAFLTIQEGCDKFCTFCVV 195
                       +E+   ++ ++D   +        R+    A+L I  GC+ FC++C+V
Sbjct: 127 ------------LEEGGHQVEVLDAASSFPTELPTAREHEWAAWLPITIGCNNFCSYCIV 174

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
           PY RG E SR L  +V EA + +  GV EITLLGQNVN++ G+ L G    F+ +L +L 
Sbjct: 175 PYVRGREKSRPLEDIVAEAERYVAAGVKEITLLGQNVNSY-GRDLYGSP-RFAQVLDALD 232

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
           +  G+ RLR+ TSHP+D++D ++     L  LMP LHLPVQSGSD +L +MNRR+T   Y
Sbjct: 233 QT-GIERLRFATSHPKDLNDEVVGRFATLRSLMPALHLPVQSGSDAVLAAMNRRYTRDHY 291

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
           R ++ ++R   PDIA+S+D IVGFPGET  DF  T  LVD++GY Q F+F YS R GTP 
Sbjct: 292 RALVAKLRDDVPDIALSTDIIVGFPGETAKDFEDTYRLVDEVGYHQVFTFIYSKREGTPA 351

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GRSPW 434
           ++M +     V  +R   L   ++++    N   +G  ++VL+E   K   +L+ G+SP 
Sbjct: 352 ASMDDDTPREVIQQRFDRLVDLVQQRAFEANQRDLGSTVDVLVEGASKRDERLLAGKSPK 411

Query: 435 LQSVVLNSK-----NHNIGDIIKVRITDVKISTLYGELV 468
            Q+V   +          G  ++VR+ + K   L GE+V
Sbjct: 412 NQTVHAPAPAGVRAEDLAGSTVRVRVDEAKTWYLAGEIV 450


>gi|260578888|ref|ZP_05846793.1| tRNA-I(6)A37 thiotransferase [Corynebacterium jeikeium ATCC 43734]
 gi|258602978|gb|EEW16250.1| tRNA-I(6)A37 thiotransferase [Corynebacterium jeikeium ATCC 43734]
          Length = 512

 Score =  295 bits (756), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 158/443 (35%), Positives = 262/443 (59%), Gaps = 22/443 (4%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           + V+++GCQMNV+DS R+  +    GY   +     D++V NTC +RE A +++Y  LG+
Sbjct: 19  YEVRTFGCQMNVHDSERLSGLLEDSGYVPASEGVTPDVVVFNTCAVRENADKRLYGTLGQ 78

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           ++ +K+    E   + + V GC+AQ + + ++ ++P V+VV G      LP LLER+   
Sbjct: 79  MKAIKD----EHPGMQIAVGGCMAQKDKQTVVDKAPWVDVVFGTHNLGSLPTLLERSAHN 134

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
            +    +  + D  E    V     R+     ++++  GC+  CTFC+VP  RG E  R 
Sbjct: 135 HKA---EVEIFDALEEFPSVLPA-KRESAYAGWVSVSVGCNNTCTFCIVPSLRGKEQDRR 190

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAW----RGKGLDGEKCTFSDLLYSLSEIKGLVR 262
             +++ E + L++ GV E+TLLGQNVNA+      + L+ ++  FS LL +  EI+GL R
Sbjct: 191 PGEILAEVKALVEQGVSEVTLLGQNVNAYGVNFADETLERDRTAFSKLLRACGEIEGLER 250

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LR+T+ HP + +D +I A  +   + P LH+P+QSGS ++LK M R + + ++  I+D++
Sbjct: 251 LRFTSPHPAEFTDDVIDAMAETPAVCPQLHMPLQSGSGKVLKDMKRSYRSKKFLAILDKV 310

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R   P  AI++D IVGFPGET++DF+AT+D+V+K  ++ AF+F+YSPR GTP + M  QV
Sbjct: 311 RERIPHAAITTDIIVGFPGETEEDFQATLDVVEKARFSSAFTFQYSPRPGTPAAEMENQV 370

Query: 383 DENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV 439
            + V   + ERLL LQ+++ E++   N   +G   E+L++  G++  +   RS   +   
Sbjct: 371 PKAVVQDRYERLLALQERISEEE---NRKLIGTTQELLVQADGRKNDRTQRRSGRSRDGR 427

Query: 440 L----NSKNHNIGDIIKVRITDV 458
           L       +   GD+++V ITD 
Sbjct: 428 LVHFTPEGDVRAGDVVEVVITDA 450


>gi|145593989|ref|YP_001158286.1| RNA modification protein [Salinispora tropica CNB-440]
 gi|229890661|sp|A4X4V8|MIAB_SALTO RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|145303326|gb|ABP53908.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Salinispora tropica
           CNB-440]
          Length = 499

 Score =  295 bits (756), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 162/417 (38%), Positives = 250/417 (59%), Gaps = 21/417 (5%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDA-DLIVLNTCHIREKAAEKVYS 82
           P+ + V++YGCQMNV+DS R+  +    GY R  + DD  D++V NTC +RE A  ++Y 
Sbjct: 9   PRTYQVRTYGCQMNVHDSERIAGLLEQAGYLRAGAADDTPDVVVFNTCAVRENADNRLYG 68

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            LG++R  K+    +  ++ + V GC+AQ +  EI+RR+P V+VV G      LP LLER
Sbjct: 69  NLGQLRPRKD----QHPEMQIAVGGCLAQKDRSEIVRRAPWVDVVFGTHNIGSLPVLLER 124

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT--AFLTIQEGCDKFCTFCVVPYTRG 200
           AR      +    VE   E L +       +R  T   +++I  GC+  CTFC+VP  RG
Sbjct: 125 ARH-----NAAAEVE-ILESLEVFPSTLPTRRESTYAGWVSISVGCNNTCTFCIVPALRG 178

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKG 259
            E  R   +++ E R L+D GV E+TLLGQNVN++   G++ G++  F  LL +  +I G
Sbjct: 179 KEKDRRPGEILSEVRSLVDEGVLEVTLLGQNVNSY---GIEFGDRYAFGKLLRACGDIDG 235

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           L R+R+T+ HP+D +D +I A  +   + P LH+P+QSGSD +L++M R + +  Y  II
Sbjct: 236 LERVRFTSPHPKDFTDDVIAAMAETPNVCPSLHMPLQSGSDDMLRAMRRSYRSERYLGII 295

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
           +++R+  PD AI++D IVGFPGET+ DF  T+D+V    ++ AF+F+YS R GTP + M 
Sbjct: 296 EKVRAAMPDAAITTDIIVGFPGETEADFERTLDVVRAARFSSAFTFQYSKRPGTPAATMA 355

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE----KHGKEKGKLVGRS 432
           +Q+ + V  ER   L   + E   + N   +G+ +EVL+     +  +  G+L GR+
Sbjct: 356 DQLPKAVVQERYERLIDCVEEITWAENRRLLGKTVEVLVAVGEGRKDERTGRLSGRA 412


>gi|126434730|ref|YP_001070421.1| RNA modification protein [Mycobacterium sp. JLS]
 gi|229890567|sp|A3PYF3|MIAB_MYCSJ RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|126234530|gb|ABN97930.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Mycobacterium sp. JLS]
          Length = 526

 Score =  295 bits (756), Expect = 9e-78,   Method: Compositional matrix adjust.
 Identities = 165/435 (37%), Positives = 253/435 (58%), Gaps = 38/435 (8%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           V + + V++YGCQMNV+DS R+  +    GY R     DAD++V NTC +RE A  K+Y 
Sbjct: 12  VARTYQVRTYGCQMNVHDSERLAGLLEDAGYRRAADGADADVVVFNTCAVRENADNKLYG 71

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            L  +   K S  +    + + V GC+AQ + + +LRR+P V+VV G      LP LLER
Sbjct: 72  NLSHLAPRKRSEPQ----MQIAVGGCLAQKDRDAVLRRAPWVDVVFGTHNIGSLPTLLER 127

Query: 143 ARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           AR  +   V+   ++++    L        R+     +++I  GC+  CTFC+VP  RG 
Sbjct: 128 ARHNRAAQVEIAEALQEFPSTLPAA-----RESAYAGWVSISVGCNNTCTFCIVPSLRGK 182

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------------WRGKGLDGEK 244
           E+ R    V+ E + L+D GV E+TLLGQNVNA                 W+       +
Sbjct: 183 EVDRRPGDVLAEIQTLVDQGVLEVTLLGQNVNAYGVSFAADERLREDPRMWQ-SAPHRNR 241

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304
             F++LL +   I GL R+R+T+ HP + +D +I+A  +   + P LH+P+QSGSDRIL+
Sbjct: 242 GAFAELLRACGRIDGLERVRFTSPHPAEFTDDVIEAMAETPNVCPALHMPLQSGSDRILR 301

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
           +M R + A +Y  IIDR+R+  PD AI++D IVGFPGET++DF+AT+D+V    ++ AF+
Sbjct: 302 AMRRSYRAEKYLGIIDRVRAAIPDAAITTDLIVGFPGETEEDFQATLDVVAASRFSSAFT 361

Query: 365 FKYSPRLGTPGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKH 421
           F+YS R GTP ++M  Q+ + V +E   RL+ LQ+++  ++   N A VG+ +E+L+   
Sbjct: 362 FQYSKRPGTPAADMPGQLPKAVVSERYQRLIELQERISLEE---NQAQVGRTLELLVATG 418

Query: 422 GKEK----GKLVGRS 432
              K     +L GR+
Sbjct: 419 EGRKDAATARLSGRA 433


>gi|294675532|ref|YP_003576148.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Prevotella ruminicola 23]
 gi|294471893|gb|ADE81282.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Prevotella ruminicola 23]
          Length = 470

 Score =  295 bits (756), Expect = 9e-78,   Method: Compositional matrix adjust.
 Identities = 168/453 (37%), Positives = 266/453 (58%), Gaps = 19/453 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ ++++YGCQMNV DS  +  +    GYE   ++D+AD + LNTC +R+ A +K+Y  L
Sbjct: 28  KKLYIETYGCQMNVADSEVVASVMQMAGYETTETIDEADAVFLNTCSVRDNAEQKIYHRL 87

Query: 85  GRIRNLKNSRIK---EGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             +   +  R+K   E   +++ V GC+A+    ++L  +   ++V GP  Y  LP+L+ 
Sbjct: 88  EALDAERRRRLKSNPEAPKMILGVLGCMAERAQRDLLD-NHFADLVAGPDAYLSLPDLIA 146

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           +A  G + ++T+ S  + ++ +     G   K G   F++I  GC+ FC +C+VPYTRG 
Sbjct: 147 QAELGHKAMNTELSTSETYKDVVPQRIGIGHKIG--GFVSIMRGCNNFCHYCIVPYTRGR 204

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR +  ++ E R L D G  E+TLLGQNVN+++ +  D     F  LL  ++E    +
Sbjct: 205 ERSRDVESILREVRDLRDKGFKEVTLLGQNVNSYKFEDTD-----FPTLLRRVAEEVPTM 259

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHP+DMSD  +K   ++  +  ++HLPVQSGSDRILK MNR++T   Y   +  
Sbjct: 260 RVRFTTSHPKDMSDETLKVIAEVPNVCKHIHLPVQSGSDRILKLMNRKYTREWYMDRVHA 319

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML-E 380
           IR + PD  +S+D  VG+  ET++D + ++DL+ ++GY  AF FKYS R GT  S  L +
Sbjct: 320 IRRIIPDCGLSTDIFVGYHSETEEDHQLSLDLMREVGYDSAFMFKYSERPGTYASKHLPD 379

Query: 381 QVDENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQ 436
            V E  K  R   L+ LQ ++   Q   N    G+  +VL+E   K  + +L GR+   +
Sbjct: 380 DVPEEEKIRRLNELIALQTEMSAIQ---NKKDEGKEFDVLVEGFSKRSREQLCGRTEQNK 436

Query: 437 SVVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
            VV +   H+IG+ ++VRIT    +TL GE +V
Sbjct: 437 MVVFDKGTHHIGETVRVRITGSTSATLLGEAIV 469


>gi|301312074|ref|ZP_07217996.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacteroides sp. 20_3]
 gi|300830176|gb|EFK60824.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacteroides sp. 20_3]
          Length = 457

 Score =  295 bits (756), Expect = 9e-78,   Method: Compositional matrix adjust.
 Identities = 169/450 (37%), Positives = 270/450 (60%), Gaps = 19/450 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F+++YGCQMNV DS  +  +    GY    ++++AD I +NTC +R+ A +K+Y  L
Sbjct: 19  RKLFIETYGCQMNVADSEVVASIMKMDGYSMTENIEEADAIFVNTCSVRDNAEQKIYGRL 78

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
              ++LK  +      L+V V GC+A+   E+++      ++VVGP +Y  LP L+    
Sbjct: 79  QYFQSLKRKK----KSLIVGVLGCMAERVKEDLIHVHH-ADLVVGPDSYLDLPNLVGAVE 133

Query: 145 FGKRVVDTDYSVEDKFER-LSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            G++ ++ + S ++ ++  + +   G +    ++ F++I  GC+ FCT+C+VPYTRG E 
Sbjct: 134 HGEKAINVELSTQETYKDVIPLKLPGVH----ISGFVSIMRGCNNFCTYCIVPYTRGRER 189

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR +  +++E R + + G  E+TLLGQNVN++  +  +GE  TF  LL  +++    +R+
Sbjct: 190 SRDIESILNEIRDMHEKGFKEVTLLGQNVNSYSFEK-EGETITFPILLDCVAKEVPDMRI 248

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+TTSHP+DMSD  ++     D +  ++HLP QSGS RILK MNR++T   Y   I  IR
Sbjct: 249 RFTTSHPKDMSDDTLRVIAANDNICKFIHLPAQSGSSRILKVMNRKYTREWYLDRIAAIR 308

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE-QV 382
            + PD AIS+D   GF  ET++D++ T+ L+ ++GY  AF FKYS R GT  ++ LE  V
Sbjct: 309 RIVPDCAISTDLFCGFHSETEEDYQETLSLMREVGYDSAFLFKYSERPGTYAASHLEDNV 368

Query: 383 DENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSV 438
            E  K  RL   + LQ KL E+    N   +G+  EVLIE   K  + +L GR+   + V
Sbjct: 369 PEEEKVRRLQGMIDLQNKLSEES---NLRDIGKTFEVLIEGFSKRSREQLFGRTSQNKVV 425

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           + + KN+++G  IKV+I     +TL+GE V
Sbjct: 426 IFDKKNYHVGQFIKVKIHKASSATLFGEPV 455


>gi|228475022|ref|ZP_04059750.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus hominis
           SK119]
 gi|228271007|gb|EEK12395.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus hominis
           SK119]
          Length = 514

 Score =  295 bits (756), Expect = 9e-78,   Method: Compositional matrix adjust.
 Identities = 164/446 (36%), Positives = 265/446 (59%), Gaps = 15/446 (3%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           F +K+YGCQMN +D+  M  +  +  Y+  + +++AD+I++NTC IRE A  KV+S +G 
Sbjct: 70  FLIKTYGCQMNAHDTEVMAGILQALDYQATDDINEADVILINTCAIRENAENKVFSEIGN 129

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           +++LK +R     + L+ V GC++Q E    +IL+    V+++ G    ++LPE+LE A 
Sbjct: 130 LKHLKKNR----PETLIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHKLPEILEEAY 185

Query: 145 FGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             K +V   +S E D  E L  V     R+    A++ I  GCDKFCT+C+VP+TRG E 
Sbjct: 186 LSKAMVVEVWSKEGDVIENLPKV-----REGSTKAWVNIMYGCDKFCTYCIVPFTRGKER 240

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR    +++E R+L   G  EITLLGQNVN++ GK +       SDLL  +S+I  + R+
Sbjct: 241 SRRPQDIIEEVRELAREGYKEITLLGQNVNSY-GKDIKDLDYGLSDLLEDISKI-DIPRV 298

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+TTSHP D +D +I+       ++P++HLPVQSG++ +LK M R+++   Y  ++DRI+
Sbjct: 299 RFTTSHPWDFTDRMIEVIAKGGNIVPHIHLPVQSGNNAVLKIMGRKYSRESYLDLVDRIK 358

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              P++A+++D IVG+P ET++ F  T+ L D++ +  A+++ YS R GTP + M + V 
Sbjct: 359 EAIPNVALTTDIIVGYPNETEEQFEETLSLYDEVQFEHAYTYLYSQRDGTPAAKMKDNVP 418

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSPWLQSVVLNS 442
             VK +RL  L KK+ +          GQ++ VL E    K++  L G +   + V    
Sbjct: 419 TEVKKDRLQRLNKKVGQYSEKAMQNYEGQVVTVLCEGTSKKDETVLAGYTEKNKLVNFKG 478

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
               IG ++ V++ + K  +L GE +
Sbjct: 479 PREAIGQLVDVKVKEAKQYSLNGEFL 504


>gi|311898737|dbj|BAJ31145.1| putative isopentenyl-adenosine A37 tRNA methylthiolase
           [Kitasatospora setae KM-6054]
          Length = 496

 Score =  295 bits (755), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 175/451 (38%), Positives = 258/451 (57%), Gaps = 26/451 (5%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           + V +YGCQMNV+DS R+  +    GY +     D DL+V NTC +RE A  K+Y  LGR
Sbjct: 8   YKVVTYGCQMNVHDSERLSGLLEQAGYAKAVGDGDPDLVVFNTCAVRENADNKLYGNLGR 67

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           +   K +       + + V GC+AQ + E I+R++P V+VV G      LP LLERA   
Sbjct: 68  LAPAKQANR----GMQIAVGGCLAQKDRETIVRKAPWVDVVFGTHNIGHLPALLERA--- 120

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKR--GVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
              V+ +  VE   E L         +R     A++ I  GC+  CTFC+VP  RG E  
Sbjct: 121 --AVEREAQVE-ILESLETFPSTLPARRESAYAAWVAISVGCNNTCTFCIVPALRGKEED 177

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R    ++ E   L+  GV E+TLLGQNVNA+ G  L G++  F  LL +  +++GL R+R
Sbjct: 178 RRPGDILAEVEALVAEGVVEVTLLGQNVNAY-GSDL-GDREAFGKLLRACGQVEGLERVR 235

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +T+ HPRD +D +I A  +    M  LH+P+QSGSDRILK+M R +    +  II+++R+
Sbjct: 236 FTSPHPRDFTDDVIAAMAETPNAMHQLHMPLQSGSDRILKAMRRSYRQERFLGIIEKVRA 295

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             PD AIS+D IVGFPGE+D+DF  T+ +V +  +A AF+F+YS R GTP + M +Q+ +
Sbjct: 296 AMPDAAISTDIIVGFPGESDEDFEQTLHVVREARFANAFTFQYSKRPGTPAAEMDDQIPK 355

Query: 385 NV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKE---KGKLVGRSPWLQS 437
            V   + ERL+ LQ+++  ++   N   VG+ +EVL+ E  GK+     +L GR+P  + 
Sbjct: 356 AVVQERYERLVALQEEISWEE---NKKQVGRRLEVLVAEGEGKKDDRTDRLSGRAPDNRL 412

Query: 438 VVLNSKNHNI--GDIIKVRITDVKISTLYGE 466
           V        +  GD++ V I+      L  E
Sbjct: 413 VHFTRPEGGVRPGDMVTVEISYAAPHHLLAE 443


>gi|83596005|gb|ABC25364.1| tRNA-i(6)A37 thiotransferase enzyme [uncultured marine bacterium
           Ant29B7]
          Length = 484

 Score =  295 bits (755), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 178/462 (38%), Positives = 269/462 (58%), Gaps = 28/462 (6%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ +++SYGCQMN  DS  +  +   +GYE  +   +ADLI+LNTC IR+KA + V + L
Sbjct: 29  KKLYLESYGCQMNFSDSEIVVSILDKEGYETTSDPKEADLILLNTCSIRDKAEQTVRNRL 88

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
              + +K    +E  D+ + + GC+A+    ++L    +V++VVGP  Y  LP+L++   
Sbjct: 89  KHFKRIK----RENKDMKIGILGCMAERVKAKLLEEEQLVDLVVGPDAYRDLPQLMKELD 144

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            GK+ ++   S ++ +  +  V  G N   GVTAF++I  GCD  C+FCVVP+TRG E S
Sbjct: 145 GGKKAINVLLSKDETYHDIEPVRLGGN---GVTAFVSITRGCDNMCSFCVVPFTRGRERS 201

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNA--WRGKGL--------DGEKCT---FSDLL 251
           R+   +V E +KL  +G  E+TLLGQNV++  W G GL        D  K +   FS LL
Sbjct: 202 RNPQTIVVECQKLWADGYKEVTLLGQNVDSYLWYGGGLKKDFKVASDMAKASALQFSHLL 261

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
           + ++     +R+R+ TS+P+DMSD +++A  +   +  Y+HLPVQSGS RILK+MNR H 
Sbjct: 262 HMVANALPEIRIRFATSNPQDMSDDVLRAIAEHKNICKYIHLPVQSGSSRILKAMNRGHD 321

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
             +Y  +IDR++ + P+ AIS D + GFP ET++D   T+ L+ ++ Y   + F YS R 
Sbjct: 322 RADYIDLIDRVKRIIPNCAISQDIMSGFPTETEEDHNETLSLMSQVRYNFGYMFAYSERP 381

Query: 372 GTPGSNMLE-QVDENVKAERLLCLQKKLREQQVSF---NDACVGQIIEVLIEKHGKEKGK 427
            T  +  LE  V   VK  R   LQ+ +  QQV     N A VGQ++EVLIE + K   K
Sbjct: 382 NTMAARKLEDDVPLAVKKRR---LQEIIDLQQVHSAERNAANVGQVVEVLIEGYSKRSDK 438

Query: 428 LV-GRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            V GR+      V   K+H  GD++ V I     +TL G+ +
Sbjct: 439 DVFGRTSQNAVAVFPKKHHLPGDLVSVLIRSSTAATLLGDSI 480


>gi|317486846|ref|ZP_07945659.1| MiaB family RNA modification enzyme [Bilophila wadsworthia 3_1_6]
 gi|316921901|gb|EFV43174.1| MiaB family RNA modification enzyme [Bilophila wadsworthia 3_1_6]
          Length = 453

 Score =  295 bits (755), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 176/455 (38%), Positives = 257/455 (56%), Gaps = 23/455 (5%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           F + ++GCQMNV DS  +      +G+   + ++ A++++LNTC +R+K  +KVY+ LGR
Sbjct: 6   FHIITFGCQMNVNDSFWLARSLQRRGFVE-SPLEKAEVVILNTCSVRDKPEQKVYAALGR 64

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           I+  +  R+        VVAGCVAQ  G     R P V +VVG       P+ +ER    
Sbjct: 65  IK-YETRRVPGS---FAVVAGCVAQQIGAGFFERFPQVRLVVGGDGLAMAPDAIERLHGD 120

Query: 147 K--RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
              R+  TD+S E   ER   +      +    AF+ I +GCD FCT+C+VP+TRG + S
Sbjct: 121 PSLRLNLTDFS-EIYPERDPALPAQGEGEIPPVAFVNIMQGCDNFCTYCIVPFTRGRQKS 179

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK---CTFSDLLYSLSEIKGLV 261
           R    ++DE R LIDNG  EITLLGQNVN++   GLD       +F+ LL  +SE+ GL 
Sbjct: 180 RDAGAILDECRALIDNGAKEITLLGQNVNSY---GLDKHASGDTSFARLLRKVSELPGLA 236

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           RLR+ T HP+D+S  +I   G++  L P LHLP+Q+GSDR+L  MNR++    Y  +++ 
Sbjct: 237 RLRFVTPHPKDLSPEVIAMFGEVPNLCPRLHLPLQAGSDRVLARMNRKYDMARYMTLVEG 296

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R+ RPDIA+S+D IVGFPGET++ F+ T+D V  + +  +FSF YS R GT  S   ++
Sbjct: 297 LRAARPDIALSTDLIVGFPGETEEQFQETLDAVRAVNFMSSFSFCYSDRPGTAASRHTDK 356

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-------KLVGRSPW 434
           V+   K  RL  LQ    +    +  A VG   ++L+E   +++           GR PW
Sbjct: 357 VEPAEKLRRLERLQALQEDLSSDWLKARVGCKTDILLEGASRKQDGEDAATESWQGRDPW 416

Query: 435 LQS--VVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
             +  V L +     G I+ V I   K  +L GEL
Sbjct: 417 GDAVNVSLPAGIGKAGLIVPVTIVTAKKHSLIGEL 451


>gi|150009019|ref|YP_001303762.1| (dimethylallyl)adenosine tRNA methylthiotransferase
           [Parabacteroides distasonis ATCC 8503]
 gi|255014851|ref|ZP_05286977.1| putative tRNA-i(6)A37 modification enzyme MiaB [Bacteroides sp.
           2_1_7]
 gi|262383912|ref|ZP_06077048.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacteroides sp. 2_1_33B]
 gi|298375748|ref|ZP_06985704.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacteroides sp. 3_1_19]
 gi|229890584|sp|A6LEM6|MIAB_PARD8 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|149937443|gb|ABR44140.1| conserved hypothetical protein, putative tRNA-i(6)A37 modification
           enzyme MiaB [Parabacteroides distasonis ATCC 8503]
 gi|262294810|gb|EEY82742.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacteroides sp. 2_1_33B]
 gi|298266785|gb|EFI08442.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacteroides sp. 3_1_19]
          Length = 457

 Score =  295 bits (755), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 169/450 (37%), Positives = 271/450 (60%), Gaps = 19/450 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F+++YGCQMNV DS  +  +    GY    ++++AD I +NTC +R+ A +K+Y  L
Sbjct: 19  RKLFIETYGCQMNVADSEVVASIMKMDGYSMTENIEEADAIFVNTCSVRDNAEQKIYGRL 78

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
              ++LK    ++   L+V V GC+A+   E+++      ++VVGP +Y  LP L+    
Sbjct: 79  QYFQSLK----RKKKSLIVGVLGCMAERVKEDLIHVHH-ADLVVGPDSYLDLPNLVGAVE 133

Query: 145 FGKRVVDTDYSVEDKFER-LSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            G++ ++ + S ++ ++  + +   G +    ++ F++I  GC+ FCT+C+VPYTRG E 
Sbjct: 134 HGEKAINVELSTQETYKDVIPLKLPGVH----ISGFVSIMRGCNNFCTYCIVPYTRGRER 189

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR +  +++E R + + G  E+TLLGQNVN++  +  +GE  TF  LL  +++    +R+
Sbjct: 190 SRDIESILNEIRDMHEKGFKEVTLLGQNVNSYSFEK-EGETITFPILLDRVAKEVPDMRI 248

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+TTSHP+DMSD  ++     D +  ++HLP QSGS RILK MNR++T   Y   I  IR
Sbjct: 249 RFTTSHPKDMSDDTLRVIAANDNICKFIHLPAQSGSSRILKVMNRKYTREWYLDRIAAIR 308

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE-QV 382
            + PD AIS+D   GF  ET++D++ T+ L+ ++GY  AF FKYS R GT  ++ LE  V
Sbjct: 309 RIVPDCAISTDLFCGFHSETEEDYQETLSLMREVGYDSAFLFKYSERPGTYAASHLEDNV 368

Query: 383 DENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSV 438
            E  K  RL   + LQ KL E+    N   +G+  EVLIE   K  + +L GR+   + V
Sbjct: 369 PEEEKVRRLQGMIDLQNKLSEES---NLRDIGKTFEVLIEGFSKRSREQLFGRTSQNKVV 425

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           + + KN+++G  IKV+I     +TL+GE V
Sbjct: 426 IFDKKNYHVGQFIKVKIHKASSATLFGEPV 455


>gi|223986392|ref|ZP_03636398.1| hypothetical protein HOLDEFILI_03710 [Holdemania filiformis DSM
           12042]
 gi|223961634|gb|EEF66140.1| hypothetical protein HOLDEFILI_03710 [Holdemania filiformis DSM
           12042]
          Length = 484

 Score =  295 bits (755), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 174/450 (38%), Positives = 261/450 (58%), Gaps = 16/450 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           V +R+++ +YGCQ N  DS  +  +  + G+    +  DADLI+LNTC +R+ A +KV  
Sbjct: 39  VGRRYYIHTYGCQANERDSETIAGILEAMGFTAAPAETDADLILLNTCAVRKNAEDKVIG 98

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELL 140
            LG ++ +K    +E  DL+  V GC+AQ E   + IL++   V+++ G    +RLP+LL
Sbjct: 99  QLGALKRMK----RENPDLIFAVCGCMAQEEDIVDLILKKYHQVDLIFGTHNLHRLPQLL 154

Query: 141 ERARFG-KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
            +A    +R V+      +  E L +   G ++     A++ I  GCDKFCT+C+VPYTR
Sbjct: 155 TQAMLSHERTVEIFSKEGEVIENLPVRRFGKHK-----AWVNIMYGCDKFCTYCIVPYTR 209

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G E SR    V+ E R+L   G  EITLLGQNVNA+      G    F+ LL   +EI G
Sbjct: 210 GKERSRDPEDVLAEVRELKAQGYKEITLLGQNVNAYGKNRASG--YGFAQLLRDTAEI-G 266

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           + R+R+TTSHP D +D +I      D +MP +HLPVQSGS  +LK M RR+T  EY  + 
Sbjct: 267 VERVRFTTSHPWDFTDEMIDVIASYDNIMPAIHLPVQSGSSEMLKIMGRRYTREEYLTLF 326

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            +I+   P  + ++D IVGFP ET++ F  T+ LVD+  Y  AF+F YSPR GTP + M 
Sbjct: 327 HKIKDRIPGCSFTTDIIVGFPNETEEQFEMTLSLVDECQYDGAFTFIYSPREGTPAARMQ 386

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GRSPWLQSV 438
           + V   VK+ RL  L +K+       N+   G+I+ VL++   K+  ++  G S   + V
Sbjct: 387 DNVPAEVKSRRLQQLNEKIAFYAHRNNEPYRGRIVTVLVDGPSKKNDQVYSGYSETNKLV 446

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468
              +++   GD+++VRIT++   +L GE V
Sbjct: 447 NFTAEHAEPGDLVQVRITEIHSWSLNGEKV 476


>gi|206890169|ref|YP_002248877.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|229891018|sp|B5YKW2|MIAB_THEYD RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|206742107|gb|ACI21164.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 431

 Score =  295 bits (755), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 167/445 (37%), Positives = 269/445 (60%), Gaps = 26/445 (5%)

Query: 28  FVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRI 87
           ++K++GCQMN +DS RM  +  ++G+  V+    AD+++ NTC IR KA +K +S LGR+
Sbjct: 7   YIKTFGCQMNEHDSERMLGILGTKGFIEVDEPKKADIVIFNTCAIRHKAEQKFFSSLGRV 66

Query: 88  RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147
           ++LK    K+   L ++VAGC AQ +GE++L + P ++ ++GP   + +  ++E     +
Sbjct: 67  KHLK----KKNPQLKIIVAGCSAQLQGEKLLNKLPYIDYIIGPDNLHVIENIIENQVSHR 122

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
              D +  V +       ++    RK  V A++ I  GC+ +CT+CVVPYTRG E SR +
Sbjct: 123 IFTDENPEVAN-------INLPVKRKDCVKAWVNIIYGCNNYCTYCVVPYTRGKERSRPV 175

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
             ++ E   L + G  E+TLLGQNVN+++    DG    F  LL  + +I+G+ R+R+ T
Sbjct: 176 DDIIKEISLLAEQGYKEVTLLGQNVNSYK----DG-NTNFPLLLEKVEKIEGIKRIRFIT 230

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
           SHP+D+S  L+    D   +  ++HLP+Q+GS++ILK MNR++T  EY + I  +R   P
Sbjct: 231 SHPKDLSKELVDVMKDYKKICEHIHLPLQAGSNKILKLMNRKYTYEEYFEKICWLREAIP 290

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
           DIAI+SD IVGFP E  +DF  T++ + +I +   F+FK+SPRLGT  + +   + E VK
Sbjct: 291 DIAITSDIIVGFPQEQHEDFEKTINALKEIRFDGIFAFKFSPRLGTAAAKLDGHISEEVK 350

Query: 388 AERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVLNSK 443
           A RL   L LQ ++ E++   N    G+I EVL+E  GK E+G   G++   + V + S 
Sbjct: 351 AARLIEVLKLQDEITERK---NKRLEGKIQEVLVE--GKDEEGFTTGKTRTNKVVKIYS- 404

Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468
           +   G+I+ V+I      +L G+++
Sbjct: 405 DIKAGEIVNVKIAKTHRHSLEGDII 429


>gi|119960909|ref|YP_947362.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Arthrobacter
           aurescens TC1]
 gi|229890443|sp|A1R550|MIAB_ARTAT RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|119947768|gb|ABM06679.1| tRNA-i(6)A37 thiotransferase [Arthrobacter aurescens TC1]
          Length = 515

 Score =  295 bits (755), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 167/449 (37%), Positives = 268/449 (59%), Gaps = 31/449 (6%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+ + V+++GCQMNV+DS RM  +    GY   +  + AD++V NTC +RE A  K+Y  
Sbjct: 24  PKTYQVRTFGCQMNVHDSERMAGLLEEAGYVPADG-EVADVVVFNTCAVRENADNKLYGN 82

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LG++R +K +       + + V GC+AQ + E I++++P V+ V G      LP LL RA
Sbjct: 83  LGQLRQVKEANPG----MQIAVGGCLAQKDRETIVKKAPWVDAVFGTHNVGALPALLNRA 138

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRG--VTAFLTIQEGCDKFCTFCVVPYTRGI 201
           R        + +  +  E L +       KR      +++I  GC+  CTFC+VP  RG 
Sbjct: 139 RH------NNEAQLEILESLDVFPSTLPTKRDSVYAGWVSISVGCNNTCTFCIVPSLRGK 192

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGL 260
           E  R   +++ E + L+D+G  E+TLLGQNVN++   G++ G++  FS LL +  EI+GL
Sbjct: 193 EKDRRPGEILAEIQALVDDGAVEVTLLGQNVNSY---GVEFGDRQAFSKLLRACGEIEGL 249

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+T+ HP   +D +I A  +    MP LH+P+QSGSD++LK M R + + ++  I+D
Sbjct: 250 ERVRFTSPHPAAFTDDVIDAMAETHNAMPQLHMPLQSGSDKVLKDMRRSYRSSKFLGILD 309

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R   P  AI++D IVGFPGET++DF+AT+D+V+K  +A AF+F+YS R GTP +++ E
Sbjct: 310 KVRDRIPHAAITTDIIVGFPGETEEDFQATLDVVEKSRFASAFTFQYSKRPGTPAADLPE 369

Query: 381 QVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKG---KLVGRSP 433
           Q+ + V   + ERL  LQ ++  ++   N   +G+ +EVL+  + G++ G   +L GRS 
Sbjct: 370 QLPKAVVQERYERLTALQDRIAAEE---NAKQLGRKVEVLVTAQSGRKAGETHRLSGRSK 426

Query: 434 WLQ----SVVLNSKNHNIGDIIKVRITDV 458
             +    SV   ++    GD + V IT+ 
Sbjct: 427 DQRLVHFSVPAGAEAPRPGDFVTVTITEA 455


>gi|256828394|ref|YP_003157122.1| MiaB family RNA modification protein [Desulfomicrobium baculatum
           DSM 4028]
 gi|256577570|gb|ACU88706.1| RNA modification enzyme, MiaB family [Desulfomicrobium baculatum
           DSM 4028]
          Length = 444

 Score =  295 bits (755), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 175/447 (39%), Positives = 251/447 (56%), Gaps = 14/447 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           RF + ++GCQMNV D+  +     S+G+       DA + V+ TC +REK  +KVYS LG
Sbjct: 2   RFHILTFGCQMNVADADWLTQSLVSRGWTEAGE-SDAQVFVVTTCSVREKPEQKVYSLLG 60

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R+++  +       D+ V V GCVAQ  GEE   R P V +V G      +P+ LER   
Sbjct: 61  RLKSYAD----RSPDVFVAVGGCVAQQIGEEFWNRFPFVRLVFGTDGTAMVPQALERLAN 116

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
              +  +     D +      +GG  + +   AF+ I +GCD FC +C+VP+TRG + SR
Sbjct: 117 DPALRISLLDFLDHYPEREQPEGGTVQAQ---AFVNIMQGCDNFCAYCIVPFTRGRQKSR 173

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           S   VV E   L+  G  E+TLLGQNVN++ G+   G+  +F+ LL  +S I GL+RL++
Sbjct: 174 SSDAVVAECEALVRRGARELTLLGQNVNSY-GQDKHGDGTSFASLLERISAIPGLMRLKF 232

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
           TTSHP+D++  ++ A G L  L P LHLPVQSGSD +LK+M R++T   Y   I  +R V
Sbjct: 233 TTSHPKDIAPEVVTAFGKLPNLCPQLHLPVQSGSDAVLKAMGRKYTRARYLDTIRELRRV 292

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P I +++D IVGFPGET  DF  T++L+ ++ Y  +FSFKYS R G     M  +V E 
Sbjct: 293 CPQITLTTDIIVGFPGETLQDFEDTLELMREVRYESSFSFKYSDRPGVRAEKMDFKVPEE 352

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK----LVGRSPWLQSVVLN 441
            K+ RL  LQ+      V    A VG + EVL+E   K +        GR    + V  +
Sbjct: 353 EKSRRLAVLQEMQDRITVEELAAQVGSMAEVLVEGPSKMQDSEYIFWRGRDGGGRIVNFS 412

Query: 442 SKNHNI-GDIIKVRITDVKISTLYGEL 467
           S    + G +++VRI D K  +L GE+
Sbjct: 413 SPIPCLTGRMVRVRIVDAKKHSLVGEI 439


>gi|237722101|ref|ZP_04552582.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|293371177|ref|ZP_06617713.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacteroides ovatus SD CMC
           3f]
 gi|299145161|ref|ZP_07038229.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacteroides sp. 3_1_23]
 gi|229448970|gb|EEO54761.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|292633738|gb|EFF52291.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacteroides ovatus SD CMC
           3f]
 gi|298515652|gb|EFI39533.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacteroides sp. 3_1_23]
          Length = 457

 Score =  295 bits (754), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 165/449 (36%), Positives = 264/449 (58%), Gaps = 20/449 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F+++YGCQMNV DS  +  +    GY    ++++AD + +NTC IR+ A +K+ + L
Sbjct: 20  KKLFIETYGCQMNVADSEVIASVMQMAGYSVAETLEEADAVFMNTCSIRDNAEQKILNRL 79

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
               +LK  +      L+V V GC+A+   ++++     V++VVGP  Y  LP+L+    
Sbjct: 80  EFFHSLKKKKKH----LIVGVLGCMAERVKDDLITNHH-VDLVVGPDAYLTLPDLIAAVE 134

Query: 145 FGKRVVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            G++ ++ + S  + +  +  S + G +     ++ F++I  GC+ FCT+C+VPYTRG E
Sbjct: 135 TGEKAINVELSTTETYRDVIPSRICGNH-----ISGFVSIMRGCNNFCTYCIVPYTRGRE 189

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR +  +++E   L+  G  E+TLLGQNVN++R +   GE  TF  LL +++E    VR
Sbjct: 190 RSRDVESILNEVADLVTKGYKEVTLLGQNVNSYRFERPTGEVVTFPMLLRTVAEAAPGVR 249

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP+DMSD  ++    +  +  ++HLPVQSGS RILK MNR++T   Y   +  I
Sbjct: 250 IRFTTSHPKDMSDETLEVIAQVPNVCKHIHLPVQSGSSRILKLMNRKYTREWYLDRVAAI 309

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE-Q 381
           + + PD  +++D   GF  ET++D   ++ L+++ GY  AF FKYS R GT  S  LE  
Sbjct: 310 KRIIPDCGLTTDIFSGFHSETEEDHALSLSLMEECGYDAAFMFKYSERPGTYASKHLEDN 369

Query: 382 VDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQS 437
           V E VK  RL   + LQ +L  +    N  C+G+  EVL+E   K  + +L GR+   + 
Sbjct: 370 VPEEVKVRRLNEIIALQNRLSAES---NQRCIGKTYEVLVEGVSKRSRDQLFGRTEQNRV 426

Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGE 466
           VV +   H +GD + VR+T+   +TL GE
Sbjct: 427 VVFDRGTHRVGDFVNVRVTEASSATLKGE 455


>gi|260494842|ref|ZP_05814972.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Fusobacterium sp. 3_1_33]
 gi|260198004|gb|EEW95521.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Fusobacterium sp. 3_1_33]
          Length = 435

 Score =  295 bits (754), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 163/447 (36%), Positives = 266/447 (59%), Gaps = 16/447 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +R  + +YGCQMNV +S +++ +F + GY+    +D+AD + LNTC +RE AA +++  L
Sbjct: 2   KRASIITYGCQMNVNESAKIKKIFQNLGYDITEEIDNADAVFLNTCTVREGAATQIFGKL 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           G ++ LK  R       ++ V GC AQ +GEE++++ PI+++V+G Q   R+P+ +E+  
Sbjct: 62  GELKALKEKR-----GTIIGVTGCFAQEQGEELVKKFPIIDIVMGNQNIGRIPQAIEKIE 116

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
             +   +     ED+       + G ++    TA ++I  GC+ FCTFC+VPY RG E S
Sbjct: 117 NNESTHEVYTDNEDELPPRLDAEFGSDQ----TASISITYGCNNFCTFCIVPYVRGRERS 172

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
             L ++V +  + +  G  EI LLGQNVN++     +G+   F+ LL  + ++KG   +R
Sbjct: 173 VPLEEIVKDVEQYVKKGAKEIVLLGQNVNSYGKDFKNGD--NFAKLLDEICKVKGDYIVR 230

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           + + HPRD +D +I      D +   LHLP+QSGS +IL+ M R +T  +Y  ++D+I+S
Sbjct: 231 FVSPHPRDFTDDVIDVIAKNDKISKCLHLPLQSGSSQILRKMGRGYTKEKYLALVDKIKS 290

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             P +A+++D IVGFPGET++DF  T+D+V K+ +  ++ F YS R GT  + M  Q+DE
Sbjct: 291 KIPGVALTADIIVGFPGETEEDFLDTIDVVQKVSFDNSYMFMYSIRKGTKAATMDNQIDE 350

Query: 385 NVKAERLLCLQKKLREQQVSFNDAC--VGQIIEVLIEKHGKE-KGKLVGRSPWLQSVVLN 441
           +VK ERL  L +   + + SFN++     +I+ VL+E   K+ K  L GR+   + V+  
Sbjct: 351 SVKKERLQRLME--VQNKCSFNESSKYKDKIVRVLVEGPSKKNKEVLSGRTSTNKIVLFK 408

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                 G  + V+I + K  TLYGE+V
Sbjct: 409 GNIALKGQFVNVKINECKTWTLYGEIV 435


>gi|188995206|ref|YP_001929458.1| putative SAM/TRAM family methylase protein [Porphyromonas
           gingivalis ATCC 33277]
 gi|229890595|sp|B2RKG6|MIAB_PORG3 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|188594886|dbj|BAG33861.1| putative SAM/TRAM family methylase protein [Porphyromonas
           gingivalis ATCC 33277]
          Length = 465

 Score =  295 bits (754), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 165/450 (36%), Positives = 268/450 (59%), Gaps = 16/450 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ ++++YGCQMNV DS  +  +    GY   +++D+AD I++NTC +R+ A +KV + L
Sbjct: 18  RKLYIETYGCQMNVADSEVVASVMQMDGYSLTDNVDEADTILVNTCSVRDNAEQKVLNRL 77

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
               +L+  R +    L++ V GC+A+   EE++R    V+VV GP +Y  LP L+  A 
Sbjct: 78  AYYHSLRKKR-RASSRLVIGVLGCMAERVKEELIREHH-VDVVAGPDSYLDLPNLVGAAE 135

Query: 145 FGKRVVDTDYSVEDKFER-LSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            G++ ++ + S+++ ++  + +  GG +    +  F++I  GC+ FC++C+VPYTRG E 
Sbjct: 136 QGEKAINVELSMQETYKDVMPLKMGGVH----INGFVSIMRGCNNFCSYCIVPYTRGRER 191

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR +  +++E R L      E+TLLGQNVN++R +  +G    F DLL +++E    +R+
Sbjct: 192 SREIESILNEVRDLKAKNFREVTLLGQNVNSYRYEQ-NGRIIRFPDLLAAVAEAVPDMRI 250

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+T+ HP+DM D  I        +  ++HLP QSGSD++L+ M R +T   Y   +  IR
Sbjct: 251 RFTSPHPKDMDDEAIAVMARYRNICNHIHLPAQSGSDKMLRVMKRGYTRRWYLDRVAAIR 310

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT-PGSNMLEQV 382
              PD AISSD   GF  ET++DF AT+ L++++GY  AF FKYS R GT    ++++ V
Sbjct: 311 RAIPDCAISSDLFCGFHSETEEDFEATLSLMEEVGYDSAFMFKYSERPGTYAARHLVDDV 370

Query: 383 DENVK---AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSV 438
            E VK    +R++ LQ +L E+    N   + +  EVLIE   K  + +L GR+   + V
Sbjct: 371 LEEVKLARLDRMIALQNRLSEES---NKRDISKTFEVLIEGFSKRSREQLFGRTQQNKVV 427

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           + +   H +G  I VRI D   +TL+GE+V
Sbjct: 428 IFDKNGHRVGQYIYVRIKDASSATLFGEVV 457


>gi|295135976|ref|YP_003586652.1| tRNA-i(6)A37 modification enzyme MiaB [Zunongwangia profunda
           SM-A87]
 gi|294983991|gb|ADF54456.1| tRNA-i(6)A37 modification enzyme MiaB [Zunongwangia profunda
           SM-A87]
          Length = 481

 Score =  295 bits (754), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 173/459 (37%), Positives = 254/459 (55%), Gaps = 22/459 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F++SYGCQMN  DS  +  +   +GY     +++ADL+++NTC IREKA + V   L
Sbjct: 24  RKLFIESYGCQMNFSDSEIVASILSKEGYNTTQQLEEADLVLVNTCSIREKAEQTVRKRL 83

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            +   +K  RI    ++ V V GC+A+    + L    IV++VVGP  Y  LP L+    
Sbjct: 84  EKYNAVK--RI--NPNMKVGVLGCMAERLKSKFLEEEKIVDLVVGPDAYKDLPNLINEVE 139

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G+  V+   S E+ +  +S V    N   GV+AF++I  GCD  CTFCVVP+TRG E S
Sbjct: 140 EGRNAVNVILSKEETYGDISPVRLQTN---GVSAFVSITRGCDNMCTFCVVPFTRGRERS 196

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNA--WRGKGLDGE-----------KCTFSDLL 251
           R    +++E   L   G  EITLLGQNV++  W G GL  +             +F+ LL
Sbjct: 197 RDPQSIIEEVNDLASRGYKEITLLGQNVDSYLWYGGGLKKDFKDATPMQKATATSFASLL 256

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
             ++E +  +R+R++TS+P+DM+  +I+       +  Y+HLPVQSGSD++LK MNR HT
Sbjct: 257 KMVAEAQPKMRIRFSTSNPQDMTLDVIEVMAAHRNICNYIHLPVQSGSDKMLKKMNRLHT 316

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
             EY  +ID I+ + PD  IS D I GFP ET++D + T+ L+  + Y   F F YS R 
Sbjct: 317 REEYFTLIDNIKKLIPDCGISHDIITGFPTETEEDHKDTLSLMQYVKYDFGFMFAYSERP 376

Query: 372 GTPGSNMLE-QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLV 429
           GT  +   E  V E  K  RL  +    +E         +G+ +EVLIEK  K+      
Sbjct: 377 GTMAARKFEDDVPEETKKRRLTEIVNLQQEHSKYRTQQFIGKTVEVLIEKSSKKSDAHWS 436

Query: 430 GRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           GR+     VV   +N+ +GD + V+I D   +TL GE +
Sbjct: 437 GRNTQNTVVVFPKENYEVGDFVNVKINDCTSATLIGEPI 475


>gi|220912233|ref|YP_002487542.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Arthrobacter
           chlorophenolicus A6]
 gi|219859111|gb|ACL39453.1| RNA modification enzyme, MiaB family [Arthrobacter chlorophenolicus
           A6]
          Length = 509

 Score =  295 bits (754), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 169/446 (37%), Positives = 263/446 (58%), Gaps = 31/446 (6%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           + V+++GCQMNV+DS RM  M    GY   +  D AD++V NTC +RE A  K+Y  LG 
Sbjct: 22  YQVRTFGCQMNVHDSERMAGMLEDAGYVPADG-DRADVVVFNTCAVRENADNKLYGNLGI 80

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           +  +K +       + + V GC+AQ + E IL+++P V+ V G      LP LLERAR  
Sbjct: 81  LAPVKAANPG----MQIAVGGCLAQKDRETILKKAPWVDAVFGTHNVGALPALLERARH- 135

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGV--TAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
                 D +  +  E L +       KR      +++I  GC+  CTFC+VP  RG E  
Sbjct: 136 -----NDEAQLEILESLDVFPSTLPTKRDSVYAGWVSISVGCNNTCTFCIVPALRGKEKD 190

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRL 263
           R    ++ E + L+D+G  E+TLLGQNVN++   G++ G++  FS LL +  +I+GL R+
Sbjct: 191 RRPGDILAEVQALVDDGAIEVTLLGQNVNSY---GVEFGDRQAFSKLLRACGDIEGLERV 247

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+T+ HP   +D +I A  +   +MP LH+P+QSGSD ILK+M R + + ++  I+D++R
Sbjct: 248 RFTSPHPAAFTDDVIDAMAETPNVMPQLHMPLQSGSDGILKAMKRSYRSTKFLGILDKVR 307

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              P  AIS+D IVGFPGET++DF+AT+D+V+K  +A AF+F+YS R GTP +++ +Q+ 
Sbjct: 308 DKIPHAAISTDIIVGFPGETEEDFQATLDVVEKSRFATAFTFQYSKRPGTPAADLPDQLP 367

Query: 384 ENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIE----KHGKEKGKLVGRSPWLQ 436
           + V   + ERL  LQ ++  ++   N   +G+ +EV++     +  +E  +L GRS   +
Sbjct: 368 KAVVQERFERLTALQDRIAAEE---NKKQLGRRVEVMVTAQSGRKAEETHRLSGRSRDQR 424

Query: 437 ----SVVLNSKNHNIGDIIKVRITDV 458
               SV   +     GD++ V ITD 
Sbjct: 425 LVHFSVPAGAPAPRPGDLVTVTITDA 450


>gi|169630131|ref|YP_001703780.1| putative tRNA-i(6)A37 modification enzyme MiaB [Mycobacterium
           abscessus ATCC 19977]
 gi|229890563|sp|B1MD05|MIAB_MYCA9 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|169242098|emb|CAM63126.1| Putative tRNA-i(6)A37 modification enzyme MiaB [Mycobacterium
           abscessus]
          Length = 507

 Score =  295 bits (754), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 169/447 (37%), Positives = 260/447 (58%), Gaps = 29/447 (6%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           + V++YGCQMNV+DS R+  +  + GY +     DAD+++ NTC +RE A  K+Y   G 
Sbjct: 15  YQVRTYGCQMNVHDSERVSGLLDAAGYVKAPEGTDADIVIFNTCAVRENADNKLY---GN 71

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           I +L   R     ++ + V GC+AQ + E +L ++P V+VV G      LP LLERAR  
Sbjct: 72  ISHLA-PRKAANPNMQIAVGGCLAQKDREGMLAKAPWVDVVFGTHNIGSLPALLERARHN 130

Query: 147 KRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
               V+   ++E     L        R+    A+++I  GC+  CTFC+VP  RG EI R
Sbjct: 131 NEAQVEIVEALEHFPSALPAT-----RESAYAAWVSISVGCNNTCTFCIVPSLRGKEIDR 185

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE----KCTFSDLLYSLSEIKGLV 261
               ++ E + L+D GV E+TLLGQNVNA+     D E    +  F++LL +   I GL 
Sbjct: 186 RPGDILGEVQALVDQGVLEVTLLGQNVNAYGVNFADPEIPRDRGAFAELLRACGRIDGLE 245

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+T+ HP + +D +I+A      + P LH+P+QSGSDRILK+M R + +  +  IID+
Sbjct: 246 RVRFTSPHPAEFTDDVIEAMAQTPNVCPQLHMPLQSGSDRILKAMRRSYRSERFLSIIDK 305

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +RS  PD AI++D IVGFPGET++DF+ T+++V +  ++ AF+F+YS R GTP + + +Q
Sbjct: 306 VRSAMPDAAITTDIIVGFPGETEEDFQQTLEVVRRARFSSAFTFQYSIRPGTPAAKLPDQ 365

Query: 382 VDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIE----KHGKEKGKLVGRSPW 434
           + + V  E   RL+ LQ+ +  ++   N   +G++IEVLI     +   E  ++ GR+  
Sbjct: 366 LPKAVVQERYDRLIALQESVTLEE---NQKQIGRMIEVLIATGEGRKDGETARMSGRARD 422

Query: 435 LQSVVLNSKNH-----NIGDIIKVRIT 456
            + V    + H       GDII V +T
Sbjct: 423 GRLVHFRPQGHVDGALRPGDIITVDVT 449


>gi|38234029|ref|NP_939796.1| hypothetical protein DIP1448 [Corynebacterium diphtheriae NCTC
           13129]
 gi|81564788|sp|Q6NGR0|MIAB_CORDI RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|38200291|emb|CAE49976.1| Conserved hypothetical protein [Corynebacterium diphtheriae]
          Length = 516

 Score =  295 bits (754), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 155/449 (34%), Positives = 262/449 (58%), Gaps = 27/449 (6%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           F V+++GCQMNV+DS R+  +    GY  V   ++ DL+V NTC +RE A +++Y  LG+
Sbjct: 19  FEVRTFGCQMNVHDSERLSGLLEEAGYHAVADGEEPDLVVFNTCAVRENADKRLYGTLGQ 78

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           +R+ K    +    + + V GC+AQ + + ++ ++P V+ V G      LP LL R+   
Sbjct: 79  LRSAKEKNPR----MQIAVGGCLAQKDKDTVVAKAPWVDAVFGTHNMGALPSLLSRSEHN 134

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           KR    +  + D  E+   V     R+     ++++  GC+  CTFC+VP  RG E+ R 
Sbjct: 135 KRA---EVEIVDSLEQFPSVLPA-KRESAYAGWVSVSVGCNNTCTFCIVPSLRGKEVDRR 190

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAW----RGKGLDGEKCTFSDLLYSLSEIKGLVR 262
              ++ E + L+D GV E+TLLGQNVNA+        +  ++  FS LL +  +I+GL R
Sbjct: 191 PGDILAEVQALVDQGVSEVTLLGQNVNAYGVNFSDPDIQRDRFAFSKLLRACGKIEGLER 250

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LR+T+ HP + +  +I A  +   + P LH+P+QSGSD++LK M R + + ++  I++ +
Sbjct: 251 LRFTSPHPAEFTHDVIDAMAETPNVCPQLHMPLQSGSDKVLKEMRRSYRSKKFLGILEEV 310

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+  P  +I++D IVGFPGET++DF+ T+++V+K  +  A++F+YSPR GTP ++  +QV
Sbjct: 311 RAKIPHASITTDIIVGFPGETEEDFQETLNVVEKARFTSAYTFQYSPRPGTPAADYADQV 370

Query: 383 DENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG----KLVGRSPWL 435
            + V   + ERLL LQ+++  ++   N   +G  +E+L++  G  K     ++ GRS   
Sbjct: 371 PKEVVQDRYERLLALQERISTEE---NAKLIGTEVELLVQASGGRKNDKTQRMTGRSRDG 427

Query: 436 QSVVLNSKNH-----NIGDIIKVRITDVK 459
           + V  + + H       GD+I   +T+ K
Sbjct: 428 RLVHFDPQGHVDGDIRPGDVITTVVTEAK 456


>gi|270284053|ref|ZP_05965469.2| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bifidobacterium gallicum
           DSM 20093]
 gi|270278006|gb|EFA23860.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bifidobacterium gallicum
           DSM 20093]
          Length = 479

 Score =  295 bits (754), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 162/406 (39%), Positives = 252/406 (62%), Gaps = 23/406 (5%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGY-----ERVNSMDDADLIVLNTCHIREKAAEKVY 81
           F+V + GCQMNV+DS R+  +  + GY     E++++ D  DLIVLNTC +RE AAE++Y
Sbjct: 27  FYVHTLGCQMNVHDSERIAGVLEADGYVPATQEQMDAQD-VDLIVLNTCAVRENAAERMY 85

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             +G    +K  R     +L + V GC+AQ + E I R++P V+ V G +    LP LL+
Sbjct: 86  GTVGLWYRIKQER----PNLQIAVGGCMAQLDRERICRKAPWVSAVFGTKNIGDLPALLD 141

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           + R      +    V D        D   +R   ++ +++I  GC+  CTFC+VP TRG 
Sbjct: 142 QNRL---TGEPQVKVNDNLTMFP-SDLPVDRASKISNWVSISVGCNNTCTFCIVPTTRGK 197

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E  R    V+ E ++ +DNG  E+TLLGQNVN++ G G+ G++  FS LL +   I+GL 
Sbjct: 198 EHDRRPGDVLAEVQRCVDNGAKEVTLLGQNVNSY-GYGI-GDRFAFSKLLRACGSIEGLE 255

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+T+ HP   +D +I A  +   +M  LH P+QSGSDR+L++M R +   ++  I+D+
Sbjct: 256 RVRFTSPHPAAFTDDVIAAMAETPNVMHQLHFPLQSGSDRVLRAMRRSYRTSKFLTILDK 315

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           IR+  PD  IS+D IVGFPGET++DF+AT+D+V++  +A AF+F YSPR GTP + M EQ
Sbjct: 316 IRAAMPDAQISTDIIVGFPGETEEDFQATLDVVEQARFASAFTFIYSPRPGTPAAAM-EQ 374

Query: 382 VDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE 424
           +D +V   + ERL+ LQ+++  + ++  +   G+ +EV+I   G++
Sbjct: 375 IDHDVVQERFERLVALQERITAENLATFE---GRDVEVMITGSGRK 417


>gi|167753302|ref|ZP_02425429.1| hypothetical protein ALIPUT_01575 [Alistipes putredinis DSM 17216]
 gi|167659233|gb|EDS03363.1| hypothetical protein ALIPUT_01575 [Alistipes putredinis DSM 17216]
          Length = 458

 Score =  295 bits (754), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 173/449 (38%), Positives = 266/449 (59%), Gaps = 20/449 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ FV++YGCQMNV D+  +  +   +GY   + +++AD++++NTC IR+ A ++++   
Sbjct: 17  RKLFVETYGCQMNVGDTEIVVAIMQQEGYVYTDKIEEADVVLINTCSIRDNAEQRIW--- 73

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR+R + + R +  G LLV + GC+A+   E +L     V++V GP  Y  LP L+  A 
Sbjct: 74  GRLREMAHLRRRRPG-LLVGIIGCMAERLRERLLEGENPVDIVAGPDAYRDLPRLVREAG 132

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G R V+   S E+ +  ++ V    N   GV++++ I  GC+ +C++CVVPYTRG+E S
Sbjct: 133 EGGRGVNVLLSREETYAEIAPVRLDRN---GVSSYIAIMRGCNNYCSYCVVPYTRGVERS 189

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R    ++ EA  L +NG  E+TLLGQNVN++R   +D     F +L+  +SEI  L+R+R
Sbjct: 190 RDPQTILSEALCLFENGYREVTLLGQNVNSYRYGAVD-----FPELMRLVSEISPLLRVR 244

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           + TSHP+DMSD L++       +   +HLP QSGS R+L+ MNR++T   Y   I  IR 
Sbjct: 245 FATSHPKDMSDRLLEVMASKPNICRCIHLPAQSGSSRMLEKMNRKYTREWYLDRIAAIRR 304

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT-PGSNMLEQVD 383
             PD AI++D I GF  ETD+D R T+ L+ ++GY  A+ FKYS R  T    +M + V 
Sbjct: 305 YMPDCAITTDLIAGFCSETDEDHRQTLSLMREVGYEFAYMFKYSERPDTFAQRHMPDDVP 364

Query: 384 ENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVV 439
           ++VK  RL   + LQ  L  +    N   VG+  E+L+E   K   + L GR+   + VV
Sbjct: 365 DSVKTARLNEIIALQNTLSAES---NARDVGKEFEILVEGTSKRSDRQLFGRTSQNKVVV 421

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
            +     IGD ++VR+T    +TL GELV
Sbjct: 422 FDRGECRIGDYVRVRVTASSSATLQGELV 450


>gi|258592142|emb|CBE68447.1| conserved protein of unknown function [NC10 bacterium 'Dutch
           sediment']
          Length = 438

 Score =  295 bits (754), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 178/444 (40%), Positives = 254/444 (57%), Gaps = 21/444 (4%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           ++GCQ N  DS R+  +  ++GY      ++ADLI+LNTC IREKA  KVYS LG  + L
Sbjct: 8   TFGCQANDLDSERITGLLHNEGYTLTECEEEADLILLNTCAIREKAEHKVYSRLGSFQVL 67

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
           K  R      L + + GCVAQ EG+ +L R P ++ VVGP     +P LL+      R V
Sbjct: 68  KRER----AGLKIGICGCVAQQEGQVLLNRFPYLDFVVGPAQLTAIPSLLQTG--ATRSV 121

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
            T  +    +     VD    R+  + A+++I EGCD FCTFCVVP+TRG E SR   ++
Sbjct: 122 VTTRAPGYSYP----VDAPVQRQSNIRAWVSIMEGCDHFCTFCVVPFTRGRERSRPPQEI 177

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE-IKGLVRLRYTTSH 269
           V+E R L   G  E+TLLGQ VN++ G+ L     +F +LL  + + +   +R+R+T+ H
Sbjct: 178 VEEIRGLKRQGYREVTLLGQTVNSY-GRKLT-PPISFVELLRQIDQLVDSQMRVRFTSPH 235

Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329
           P D++D L  A   L  L   +HLPVQSGSDRIL  M R HT  EY + I  +R+  P+I
Sbjct: 236 PLDVTDELAAAIAALPSLCEQIHLPVQSGSDRILYQMKRGHTRDEYLKKIALLRARTPEI 295

Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA- 388
           AI++D IVGFPGET++DF+AT+DL+ ++G+  AF FKYSPR  T    M +Q+ E  K  
Sbjct: 296 AITTDVIVGFPGETEEDFQATLDLMQEVGFDGAFMFKYSPRPHTEAERMPDQLSEEAKGR 355

Query: 389 --ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG--KLVGRSPWLQSVVLNSKN 444
             E+ L L  +L    +  N A +G+ +EVL+ +   +    +  GR+   + V    + 
Sbjct: 356 WLEQALALMNRL---SLERNRAYLGRTVEVLVNREDAKGNTDRHTGRTRQNKIVHFGGEG 412

Query: 445 HNIGDIIKVRITDVKISTLYGELV 468
              G  + V IT      L GE+V
Sbjct: 413 VVDGSFVSVAITGATPLYLQGEMV 436


>gi|317121910|ref|YP_004101913.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Thermaerobacter
           marianensis DSM 12885]
 gi|315591890|gb|ADU51186.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Thermaerobacter
           marianensis DSM 12885]
          Length = 517

 Score =  295 bits (754), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 180/446 (40%), Positives = 256/446 (57%), Gaps = 16/446 (3%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           + + ++GCQMN  DS  +       G      +D+ADLI+LNTC +RE A EKV+  +G 
Sbjct: 58  YKILTWGCQMNERDSEILAGQLEEMGMVPAGLLDEADLILLNTCAVRETAEEKVFGTIGY 117

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           ++ LK    ++  DL++ + GC+AQ E     I R  P V++V G    ++LP+L+ER R
Sbjct: 118 LKVLK----QQNPDLILGLCGCMAQEESTIRRIQRYYPHVDLVFGTHNVHQLPQLIERVR 173

Query: 145 FGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             +  VVD   + E   E L     G     GV A++ I  GCDK+CTFC+VP TRG E 
Sbjct: 174 REEGMVVDVWQAAEGVVEHLPSRRAG-----GVKAWVNIIYGCDKYCTFCIVPTTRGRER 228

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR    V+ E   L   G  E+TLLGQNVN++ GK L G    F+DLL  L  + G+  +
Sbjct: 229 SRRPEDVIAEVEYLAAEGYKEVTLLGQNVNSY-GKDL-GTGFDFADLLARLDRVPGIRWI 286

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           RYTTSHPRD +D LI+   + D +  + HLPVQSGS+ +L+ MNRR+T   Y ++I++IR
Sbjct: 287 RYTTSHPRDFTDKLIRTIAESDKVTEHFHLPVQSGSNAVLRWMNRRYTREYYLRLIEKIR 346

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              PD  I++D IVGFP ET++DFR T+DLV ++ Y  AF+F YSPR GTP +    Q+ 
Sbjct: 347 EAVPDACITTDIIVGFPKETEEDFRQTLDLVRQVEYDNAFTFIYSPREGTPAARW-PQLP 405

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVLNS 442
             VK ERL  L +      +  N   VGQ   VLI+   K+  + L  R+   + V++  
Sbjct: 406 REVKQERLERLMEVQYAINLRKNQRLVGQTAVVLIDGPSKKNPRVLSARTRTNKLVLVPG 465

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
           +    G   +V IT  +  TL G ++
Sbjct: 466 EAAWSGRFARVEITRAQTFTLEGRML 491


>gi|288928957|ref|ZP_06422803.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella sp. oral taxon
           317 str. F0108]
 gi|288329941|gb|EFC68526.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella sp. oral taxon
           317 str. F0108]
          Length = 440

 Score =  295 bits (754), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 162/451 (35%), Positives = 261/451 (57%), Gaps = 20/451 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ ++++YGCQMNV DS  +  +    GYE      DAD I +NTC +RE A  K+Y+ L
Sbjct: 2   KKLYIETYGCQMNVADSEVVAAVMQMAGYEMCQDEADADAIFMNTCSVRENAENKIYNRL 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             +    ++  K+G  +++ V GC+A+   ++++       +V GP +Y  LP+++ +A 
Sbjct: 62  DTL----HAEQKKGRKVILGVLGCMAERVKDDLIENHH-AQLVAGPDSYLNLPDMIAQAE 116

Query: 145 FGKRVVDTDYSVEDKF-----ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
            G + +D   S  + +     +R+++          ++ F++I  GCD FC +C+VPYTR
Sbjct: 117 AGNKAIDIALSKTETYRDVVPKRVALAK--------ISGFVSIMRGCDNFCHYCIVPYTR 168

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G E SR +  +++E R L   G  E+TLLGQNVN+++    +G+   F  LL  ++E   
Sbjct: 169 GRERSRDVDSILNEVRNLQQQGYKEVTLLGQNVNSYQFVNEEGQTIDFPQLLRLVAEAVP 228

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
            +R+R++T HP+DMSD  ++   ++  +  ++HLP+QSGSD++LK MNR++T   Y   +
Sbjct: 229 TMRIRFSTPHPKDMSDATLRVIAEVPNVCRHIHLPIQSGSDKVLKLMNRKYTVEWYLSRV 288

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
             IR + PD  +S+D  VG+ GET+ D   ++ ++ ++GY  AF FKYS R GT  S  L
Sbjct: 289 KAIRELVPDCGLSTDIFVGYHGETEADHEESLRIMREVGYDSAFMFKYSERPGTYASKHL 348

Query: 380 -EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQS 437
            + V E+VK  RL  L     E     N A VG + EVL+E   K  + +L GR+   + 
Sbjct: 349 PDDVPEDVKIRRLNELIMVQNENSARANHAEVGNVREVLVEGPSKRSREQLCGRTEQNKM 408

Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           VV +  NH+IG+ +KVRIT    +TL GE V
Sbjct: 409 VVFDKGNHHIGEYVKVRITGSTSATLLGEAV 439


>gi|237745063|ref|ZP_04575544.1| tRNA 2-methylthioadenosine synthase [Fusobacterium sp. 7_1]
 gi|256026731|ref|ZP_05440565.1| MIAB protein [Fusobacterium sp. D11]
 gi|289764728|ref|ZP_06524106.1| tRNA 2-methylthioadenosine synthase [Fusobacterium sp. D11]
 gi|229432292|gb|EEO42504.1| tRNA 2-methylthioadenosine synthase [Fusobacterium sp. 7_1]
 gi|289716283|gb|EFD80295.1| tRNA 2-methylthioadenosine synthase [Fusobacterium sp. D11]
          Length = 435

 Score =  294 bits (753), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 163/447 (36%), Positives = 266/447 (59%), Gaps = 16/447 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +R  + +YGCQMNV +S +++ +F + GY+    +D+AD + LNTC +RE AA +++  L
Sbjct: 2   KRASIITYGCQMNVNESAKIKKIFQNLGYDITEEIDNADAVFLNTCTVREGAATQIFGKL 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           G ++ LK  R       ++ V GC AQ +GEE++++ PI+++V+G Q   R+P+ +E+  
Sbjct: 62  GELKALKEKR-----GTIIGVTGCFAQEQGEELVKKFPIIDIVMGNQNIGRIPQAIEKIE 116

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
             +   +     ED+       + G ++    TA ++I  GC+ FCTFC+VPY RG E S
Sbjct: 117 NNESTHEVYTDNEDELPPRLDAEFGSDQ----TASISITYGCNNFCTFCIVPYVRGRERS 172

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
             L ++V +  + +  G  EI LLGQNVN++     +G+   F+ LL  + ++KG   +R
Sbjct: 173 VPLEEIVKDVEQYVKKGAKEIVLLGQNVNSYGKDFKNGD--NFAKLLDEICKVKGDYIVR 230

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           + + HPRD +D +I      D +   LHLP+QSGS +IL+ M R +T  +Y  ++D+I+S
Sbjct: 231 FVSPHPRDFTDDVIDVIAKNDKISKCLHLPLQSGSSQILRKMGRGYTKEKYLALVDKIKS 290

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             P +A+++D IVGFPGET++DF  T+D+V K+ +  ++ F YS R GT  + M  Q+DE
Sbjct: 291 KIPGVALTADIIVGFPGETEEDFLDTIDVVQKVSFDNSYMFMYSIRKGTKAATMDNQIDE 350

Query: 385 NVKAERLLCLQKKLREQQVSFNDAC--VGQIIEVLIEKHGKE-KGKLVGRSPWLQSVVLN 441
           +VK ERL  L +   + + SFN++     +I+ VL+E   K+ K  L GR+   + V+  
Sbjct: 351 SVKKERLQRLME--VQNKCSFNESSKYKDKIVRVLVEGPSKKNKEVLSGRTSTNKIVLFK 408

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                 G  + V+I + K  TLYGE+V
Sbjct: 409 GDIALKGQFVNVKINECKTWTLYGEIV 435


>gi|149369934|ref|ZP_01889785.1| 2-methylthioadenine synthetase [unidentified eubacterium SCB49]
 gi|149356425|gb|EDM44981.1| 2-methylthioadenine synthetase [unidentified eubacterium SCB49]
          Length = 479

 Score =  294 bits (753), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 171/462 (37%), Positives = 264/462 (57%), Gaps = 27/462 (5%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F++SYGC MN  DS  +  +   QG+    ++++ADL+++NTC IR+KA + V   L
Sbjct: 24  RKLFIESYGCAMNFSDSEIVASILSEQGFNTTQTLEEADLVLVNTCSIRDKAEQTVRKRL 83

Query: 85  GRIRNLK---NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
            +   +K   N ++K G      V GC+A+   E+ L    IV++VVGP  Y  LP LL 
Sbjct: 84  EKYNAVKRDINPKMKVG------VLGCMAERLKEKFLDEEKIVDMVVGPDAYKDLPNLLA 137

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
               G   V+   S ++ +  ++ V    N   G+ A ++I  GCD  CTFCVVP+TRG 
Sbjct: 138 EVEAGNDAVNVVLSKDETYGDIAPVRLNTN---GINALVSITRGCDNMCTFCVVPFTRGR 194

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNA--WRGKGL--------DGEKCT---FS 248
           E SR    ++DE  KL ++G  E+TLLGQNV++  W G GL        + EK T   FS
Sbjct: 195 ERSRDPKSILDEISKLANSGYKEVTLLGQNVDSYLWYGGGLKKDYKNATEMEKATATSFS 254

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
            LL  ++  +  +R+R++TS+P+DM++ +         +  ++HLPVQSGS+RILK MNR
Sbjct: 255 QLLDLVASAQPEMRIRFSTSNPQDMTEEVFHVMAKHKNICKHVHLPVQSGSNRILKEMNR 314

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
           +HT  EY  +++R+  + P+ +IS D I+GFP ET+ D + T+DL++K+ ++  + +KYS
Sbjct: 315 QHTVEEYLALVNRMWEIIPEASISQDMIIGFPSETEQDHKDTLDLMEKVKFSFGYMYKYS 374

Query: 369 PRLGTPGSNMLE-QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-G 426
            R GT  +   E  V E  K  RL  +  + R+         VG++ EVLIEK  K+   
Sbjct: 375 ERPGTMAARKFEDDVPEATKKRRLQEIVDQQRKDAAYRTQQFVGKVTEVLIEKVSKKNPD 434

Query: 427 KLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           +  GR+     VV   +N+ +GD ++V I D   +TL GE V
Sbjct: 435 QWSGRNEQSIGVVFPKENYKVGDFVQVLIKDCTSATLIGEAV 476


>gi|283853068|ref|ZP_06370324.1| RNA modification enzyme, MiaB family [Desulfovibrio sp. FW1012B]
 gi|283571535|gb|EFC19539.1| RNA modification enzyme, MiaB family [Desulfovibrio sp. FW1012B]
          Length = 446

 Score =  294 bits (753), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 177/452 (39%), Positives = 252/452 (55%), Gaps = 24/452 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +F V + GCQMNV D   +     + G+      + ADL +L TC +REK  +KV S LG
Sbjct: 2   KFHVITMGCQMNVGDGDWLTRSLQTTGFTPAPEHE-ADLFILFTCSVREKPEQKVASELG 60

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ--TYYRLPELLERA 143
           RI +    R ++  +  V V GCVAQ  G  + RR P+V +V G                
Sbjct: 61  RIAD----RHRDNPNACVAVGGCVAQQLGTSLWRRFPMVRLVFGTDGIAAAPRALARLAE 116

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKR-GVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
             G R+   D++ E   ER    D  +   R    AF++I +GCD +C +C+VP+ RG +
Sbjct: 117 EPGLRLSLLDFT-ESYPER----DQSWPEDRLPPRAFVSIMQGCDNYCAYCIVPFVRGRQ 171

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD--GEKCTFSDLLYSLSEIKGL 260
            SR  + VV+E R L + GV E+TLLGQNVN++   GLD  G+  +F+ LL +++ + G+
Sbjct: 172 KSRGAAAVVEECRNLAERGVREVTLLGQNVNSY---GLDASGDGTSFARLLDAVAAVPGI 228

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+TTSHP+D+SD +I+  G L  L P LHLPVQSGSDRIL+ M RR+   +YR+++ 
Sbjct: 229 ARIRFTTSHPKDLSDDVIERFGSLPQLCPALHLPVQSGSDRILRRMGRRYDTADYRRLVA 288

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R  RPD+A+++D IVGFPGET+ DF+ T+DLV ++ +   FSF Y  R GT    +  
Sbjct: 289 KLRRARPDLALTTDLIVGFPGETEADFKETLDLVREVRFESGFSFMYGDRPGTASERLEP 348

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG----KLVGRSPWLQ 436
           ++    KA RL  LQ  L     +   A VG   E+LIE   +  G       GR PW +
Sbjct: 349 KIAPEAKAARLAELQTLLDAGLTASLAARVGTSAEILIEGPSRRDGAAGPSWRGRDPWGR 408

Query: 437 SVVLNSKNHN--IGDIIKVRITDVKISTLYGE 466
            V L    H    G I+  RI   K  +L GE
Sbjct: 409 IVNLPLPGHGDAAGTIVPARIVQAKKHSLIGE 440


>gi|325299379|ref|YP_004259296.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Bacteroides salanitronis DSM 18170]
 gi|324318932|gb|ADY36823.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Bacteroides salanitronis DSM 18170]
          Length = 463

 Score =  294 bits (753), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 167/443 (37%), Positives = 257/443 (58%), Gaps = 10/443 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F+++YGCQMNV DS  +  +    GYE   ++D+AD + +NTC IR+ A +K+ + L
Sbjct: 19  KKLFIETYGCQMNVADSEVVASVMQMAGYEPCGTLDEADAVFMNTCSIRDNAEQKILNRL 78

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
                L+  R      L+V V GC+A+   E+++     V++V GP  Y  LP+L+    
Sbjct: 79  EFFHALRKKR----KHLIVGVLGCMAERVKEDLIENHH-VDLVAGPDAYLSLPDLIASVE 133

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G++ ++ + S  + +  +       NR   V+ +++I  GC+ FC +C+VPYTRG E S
Sbjct: 134 AGEKAINVELSTTETYRDVIPSRICGNR---VSGYVSIMRGCNNFCHYCIVPYTRGRERS 190

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R ++ +++E   L   G  E+TLLGQNVN++R +  DG   TF  LL +++E    +R+R
Sbjct: 191 RDVASILNEVNDLCQKGYKEVTLLGQNVNSYRFEQADGTVITFPMLLRTVAEAVPGMRVR 250

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +TTSHP+DMSD  ++   D+  +  ++HLPVQSGS RILK MNR++T   Y + +  IR 
Sbjct: 251 FTTSHPKDMSDETLQVIADVPNVCKHIHLPVQSGSSRILKLMNRKYTREWYLERVAAIRR 310

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML-EQVD 383
           + PD  +S+D   GF  ET++D + ++ L+ +  Y  AF FKYS R GT  S  L + V 
Sbjct: 311 IIPDCGLSTDIFSGFHSETEEDHQMSLSLMRECAYDSAFMFKYSERPGTYASKHLPDDVP 370

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVLNS 442
           E VK  RL  L +   +     N   VG+  EVL+E   K  K +L GR+   + VV + 
Sbjct: 371 EEVKIRRLNELIELQNQLSAESNAKDVGKTFEVLVEGVSKRSKEQLFGRTEQNKVVVFDR 430

Query: 443 KNHNIGDIIKVRITDVKISTLYG 465
             H IGD +KVRIT+   +TL G
Sbjct: 431 GTHRIGDFVKVRITESSSATLKG 453


>gi|46447392|ref|YP_008757.1| 2-methylthioadenine synthetase [Candidatus Protochlamydia
           amoebophila UWE25]
 gi|81626503|sp|Q6MAB7|MIAB_PARUW RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|46401033|emb|CAF24482.1| probable 2-methylthioadenine synthetase [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 450

 Score =  294 bits (753), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 174/448 (38%), Positives = 272/448 (60%), Gaps = 20/448 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++FFVK+YGCQMN  DS  M     ++G  R +  +DADL++ NTC IR+ A  KV   L
Sbjct: 17  KKFFVKTYGCQMNELDSEIMIGQLENRGLTRSHDENDADLLIFNTCSIRDLAERKVMGKL 76

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-ERA 143
           G++   K S+       ++ V GC+A A+ + + ++ P ++ V+G    + L  +L E  
Sbjct: 77  GKLGLTKQSQA------IIGVTGCMANAKKDSLFQKLPHIDFVLGTNNIHDLNHVLDEVL 130

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             GK+ + TD   E + + L+       R+  + A+++I  GCDKFCT+CVVPYTRG E+
Sbjct: 131 ASGKQSIRTDDHFEFELDYLNA-----KREDQIKAYVSIIRGCDKFCTYCVVPYTRGSEV 185

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR+   +++E R L++ G  EITLLGQNVN++ GK     KC F DLLY L +I GL R+
Sbjct: 186 SRAPENILEECRHLVNQGYKEITLLGQNVNSY-GKDKLEWKCLFHDLLYQLDKIPGLERV 244

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+ TSHP D+S  L++A  DL  L  ++H P+Q+GS+R+LK M+R +T  +Y + +  ++
Sbjct: 245 RFMTSHPVDISKELMEAIRDLKTLCEFVHFPLQAGSNRVLKKMHRIYTVEQYLEKVQMLK 304

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
            + P++A+ +D IVGFP ET+++F+ T  L+ +I Y+ AF F YSPR GTP     + V 
Sbjct: 305 EIVPNVALGTDIIVGFPTETEEEFQETYRLLKEIEYSVAFLFSYSPRKGTPAMRWRDDVP 364

Query: 384 ENVKAERLLCLQKKLREQQVSF---NDACVGQIIEVLIEKHGKEKGKLV-GRSPWLQSVV 439
           E VK +R   LQ+ L+ Q   +     A +GQ +EVL+E+   +  +LV GR+   ++V+
Sbjct: 365 EEVKQDR---LQRLLQLQDTIYMKHRQAFLGQTVEVLVERRNFKDDRLVKGRTRCWKNVL 421

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGEL 467
               +  +G + +V+I      TL G+L
Sbjct: 422 FTGGDELVGTMQQVKIHGYSHQTLLGDL 449


>gi|297621452|ref|YP_003709589.1| miaB-methiolase [Waddlia chondrophila WSU 86-1044]
 gi|297376753|gb|ADI38583.1| miaB-methiolase [Waddlia chondrophila WSU 86-1044]
          Length = 439

 Score =  294 bits (753), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 167/449 (37%), Positives = 265/449 (59%), Gaps = 20/449 (4%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+ FFV++YGCQMN  D+  +  +  S+G ER    + ADL++ NTC IR+ A  KV   
Sbjct: 4   PKNFFVRTYGCQMNELDTEVIVGLLESRGLERTEDENLADLLIYNTCSIRDLAERKV--- 60

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-ER 142
           +G++  L  SR K   D ++ V GC+A A+ + + R+ P ++ V+G    + L  +L E 
Sbjct: 61  MGKLGKLGRSRKK---DKMIGVTGCMANAKKDTLFRKLPHIDFVLGTNNIHDLNSVLDEV 117

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
              G +   TD    +KF    +      R   + AF++I  GCDKFCT+CVVPYTRG E
Sbjct: 118 MATGTQSCRTD----EKFS-FELDYASAKRDDHLKAFVSIIRGCDKFCTYCVVPYTRGPE 172

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SRS   +++E ++L D G  E+TLLGQNVN++ GK      C F DLL  + +  G+ R
Sbjct: 173 VSRSPEHIIEEIKQLADKGYKEVTLLGQNVNSY-GKDQPEWNCLFHDLLERIDQETGIAR 231

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+ TSHP D++  L++A  D D L  ++H P+QSGS RIL+ M+R +T  +Y + +  +
Sbjct: 232 VRFMTSHPVDITRELMEAIRDFDSLCEFVHFPIQSGSSRILRKMHRIYTLEQYMEKVQML 291

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           + + P++++ +D IVGFP ET+++F+ T D + +I Y+ AF F YSPR GTP     + +
Sbjct: 292 KEIVPNVSLGTDVIVGFPTETEEEFQMTYDAMKEIEYSVAFIFAYSPRKGTPAMRWKDDI 351

Query: 383 DENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GRSPWLQSV 438
            E VK E   RL+ LQ+ + ++Q+      +G+ +EVL+E+   +  + V GR+   + V
Sbjct: 352 PEEVKQERLHRLMELQESIYKKQLQ---EMMGKEVEVLVERRNSKDDRFVKGRTSCWKKV 408

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGEL 467
           +    +  IG + KV +      TL G++
Sbjct: 409 IFPGTDEMIGTLQKVIVDGYSHQTLIGKM 437


>gi|222151135|ref|YP_002560289.1| tRNA-i(6)A37 modification enzyme MiaB [Macrococcus caseolyticus
           JCSC5402]
 gi|222120258|dbj|BAH17593.1| tRNA-i(6)A37 modification enzyme MiaB [Macrococcus caseolyticus
           JCSC5402]
          Length = 509

 Score =  294 bits (753), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 164/448 (36%), Positives = 268/448 (59%), Gaps = 15/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++F++++YGCQMN +D+  M  +F +  YE  + ++DAD+I+LNTC IRE A  KV+  +
Sbjct: 65  RKFYIRTYGCQMNEHDTEVMAGIFEALEYEATSDVNDADVILLNTCAIRENAENKVFGEI 124

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G ++++K ++     D+L+ V GC++Q E    +IL+    V+++ G    +RLP +L+ 
Sbjct: 125 GNLKHIKQAK----PDVLIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHRLPAILDE 180

Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           A   K +V   +S E D  E L       +R     A++ I  GCDKFCT+C+VP+TRG 
Sbjct: 181 AYMSKAMVVEVWSKEGDVIENLP-----KSRLGDTKAWVNIMYGCDKFCTYCIVPFTRGK 235

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR   +++ E R L   G  EI LLGQNVNA+ GK +DG      DLL  + +I  + 
Sbjct: 236 ERSRMPEEIIAEVRDLARRGYKEICLLGQNVNAY-GKDIDGLNYGLGDLLADIQKID-IP 293

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHP D  D LI+       ++P++HLPVQSG++ +LK M R+++   Y +++ +
Sbjct: 294 RVRFTTSHPWDFDDRLIEVIAAGGNIVPHIHLPVQSGNNEVLKIMGRKYSRESYLELVGK 353

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I++  P++A+++D IVG+P ET++ F+ T+ L +++ +  A+++ YSPR GTP + M + 
Sbjct: 354 IKAAMPEVALTTDIIVGYPNETEEQFQETLSLYEEVAFDHAYTYLYSPREGTPAAKMEDN 413

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440
           V    K +RL  L K + +         + Q + VL E   K+  + L G +   + V  
Sbjct: 414 VPMREKKDRLQRLNKLVGDYTERALSHYLDQEVVVLCEGPSKKNDEILAGYTEKNKLVNF 473

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
           N     IG ++KVRIT+ K  ++ GEL+
Sbjct: 474 NGPKEAIGQLVKVRITETKQYSMNGELI 501


>gi|34540755|ref|NP_905234.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Porphyromonas
           gingivalis W83]
 gi|81416611|sp|Q7MAW4|MIAB_PORGI RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|34397069|gb|AAQ66133.1| tRNA-i(6)A37 modification enzyme MiaB [Porphyromonas gingivalis
           W83]
          Length = 463

 Score =  294 bits (752), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 168/453 (37%), Positives = 268/453 (59%), Gaps = 22/453 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ ++++YGCQMNV DS  +  +    GY   +++D+AD I++NTC +R+ A +KV + L
Sbjct: 18  RKLYIETYGCQMNVADSEVVASVMQMDGYNLTDNVDEADTILVNTCSVRDNAEQKVLNRL 77

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
               +L+  R +    L++ V GC+A+   EE++R    V+VV GP +Y  LP L+  A 
Sbjct: 78  AYYHSLRKKR-RASSRLVIGVLGCMAERVKEELIREHH-VDVVAGPDSYLDLPNLVGAAE 135

Query: 145 FGKRVVDTDYSVEDKFER-LSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            G++ ++ + S ++ ++  + +  GG +    +  F++I  GC+ FC++C+VPYTRG E 
Sbjct: 136 QGEKAINVELSTQETYKDVMPLKMGGVH----INGFVSIMRGCNNFCSYCIVPYTRGRER 191

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR +  +++E R L      E+TLLGQNVN++R +  +G    F DLL +++E    +R+
Sbjct: 192 SREIESILNEVRDLKAKNFREVTLLGQNVNSYRYEQ-NGRIIRFPDLLAAVAEAVPDMRI 250

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+T+ HP+DM D  I        +  ++HLP QSGSD++L+ M R    Y  R  +DR+ 
Sbjct: 251 RFTSPHPKDMDDEAIAVMARYRNICNHIHLPAQSGSDKMLRVMKR---GYTRRWYLDRVA 307

Query: 324 SVR---PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML- 379
           ++R   PD AISSD   GF  ET++DF AT+ L++++ Y  AF FKYS R GT  +  L 
Sbjct: 308 AIRRAIPDCAISSDLFCGFHSETEEDFEATLSLMEEVRYDSAFMFKYSERPGTYAARHLA 367

Query: 380 EQVDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWL 435
           + V E VK  RL   + LQ +L E+    N   +G+  EVLIE   K  + +L GR+   
Sbjct: 368 DDVPEEVKLSRLDRMIALQNRLSEES---NKRDIGKTFEVLIEGFSKRSREQLFGRTQQN 424

Query: 436 QSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           + V+ +   H +G  I VRI D   +TL+GE+V
Sbjct: 425 KVVIFDKNGHRVGQYIYVRIKDASSATLFGEVV 457


>gi|303233246|ref|ZP_07319918.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Atopobium vaginae
           PB189-T1-4]
 gi|302480636|gb|EFL43724.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Atopobium vaginae
           PB189-T1-4]
          Length = 459

 Score =  294 bits (752), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 181/466 (38%), Positives = 271/466 (58%), Gaps = 21/466 (4%)

Query: 13  MVSQIV-DQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCH 71
           M  Q+V D  +V + + +K++GCQMN++DS R+  +    G   V ++++AD++V  TC 
Sbjct: 1   MERQLVQDNKLVGKTYLIKTFGCQMNLHDSERVAGLLDDCGCNEVQTVEEADIVVFMTCS 60

Query: 72  IREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ 131
           +REKA   +Y   G + NL        G  ++ V GC+AQ +G  + +  P V+VV G  
Sbjct: 61  VREKADTHLY---GAVSNLVVVPAPPCGKRVIAVGGCIAQRDGARLKKHIPNVDVVFGTS 117

Query: 132 TYYRLPELLERA--RFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
               +PELL  A    G  V VDT   VE    R    +    R++   A++ I  GC+ 
Sbjct: 118 ALASVPELLCEAFESDGSEVFVDT---VEKN--RGFSCELPSKREQYFHAWVPIMTGCNN 172

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS 248
           FCTFC+VP  RG E SR   +VV E  +L+D+GV E+TLLGQNVN++ G+ L G K  FS
Sbjct: 173 FCTFCIVPLVRGRERSRVFERVVAEVARLVDDGVREVTLLGQNVNSY-GRDLYG-KPRFS 230

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
           +LL  + +  G+ R+R+T+S+P+D+S   I+A  +   +MP LHL VQSGS+RIL++M+R
Sbjct: 231 ELLREVGKT-GIERIRFTSSNPKDLSHDTIRAMAETPNVMPQLHLAVQSGSNRILRAMHR 289

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
            +   +Y  +I  ++   P IA+S+D IVGFPGET++DF  TM LVD++GYA A++F YS
Sbjct: 290 AYNREKYLSVIAELKEAIPGIALSTDIIVGFPGETEEDFLQTMSLVDEVGYASAYTFIYS 349

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK- 427
            R GTP + +++     V  ER   L K++ E   S N   +   +  L+E   K+    
Sbjct: 350 KRPGTPAAKIVDTTPHEVIQERFERLTKRIEELAYSANQVDLHAHVTALVEGTSKKNPSV 409

Query: 428 LVGRSPWLQSVVLN-----SKNHNIGDIIKVRITDVKISTLYGELV 468
           LVG SP  Q+V+ +        H IG + +V I++ K   L G LV
Sbjct: 410 LVGHSPKNQTVLFDLPEGTKPEHFIGQMCEVEISEAKTWYLRGSLV 455


>gi|313157989|gb|EFR57395.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Alistipes sp. HGB5]
          Length = 445

 Score =  294 bits (752), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 168/444 (37%), Positives = 261/444 (58%), Gaps = 14/444 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ FV++YGCQMNV D+  +  +   +GY     +D+AD+I++NTC IR+ A ++++   
Sbjct: 9   RKLFVETYGCQMNVGDTEIVVSVMQREGYVYTERIDEADVILINTCSIRDNAEQRIW--- 65

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR+  +K  R    G L+V V GC+A+   E+++     V+VV GP  Y  LP L+  A 
Sbjct: 66  GRLAEMKRYRRANPG-LVVGVIGCMAERLKEKLVEGPHGVDVVAGPDVYRDLPRLVREAE 124

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G + V+   S E+ +  ++ V    N   GV+AF+ I  GC+ FC++CVVPYTRG E S
Sbjct: 125 AGGKGVNVLLSTEETYAEIAPVRLDRN---GVSAFVAIMRGCNNFCSYCVVPYTRGRERS 181

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R    ++ E R L  NG  E+TLLGQNVN++R   +D     F  L+  ++ +  L+R+R
Sbjct: 182 RDPETILAEVRTLFGNGYREVTLLGQNVNSYRFGEVD-----FPGLMRRVASVSPLLRVR 236

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           + TSHP+D+SD L++   ++  +   +HLP QSG+  +L  MNR++T   Y   +  IR 
Sbjct: 237 FATSHPKDISDSLLEVMAEMPNICRAIHLPAQSGASSMLARMNRKYTREWYLDRVAAIRR 296

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML-EQVD 383
             PD A+++D I GF GET+++  AT+ L+ ++GY  A+ FKYS R GT     L + V 
Sbjct: 297 YLPDCAVTTDLIAGFSGETEEEHAATLSLMREVGYEFAYMFKYSERPGTYAHKHLPDDVP 356

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVLNS 442
           E VK+ RL  +     E   + N   VG+  EVL+E   K ++ +L GR+   + VV + 
Sbjct: 357 EEVKSARLAEIIALQNELSRASNLRDVGREFEVLVEGTSKRDENQLSGRTSQNKVVVFDR 416

Query: 443 KNHNIGDIIKVRITDVKISTLYGE 466
             H +GD ++VRIT    +TL+GE
Sbjct: 417 GGHGVGDYVRVRITGCTPATLFGE 440


>gi|302344087|ref|YP_003808616.1| RNA modification enzyme, MiaB family [Desulfarculus baarsii DSM
           2075]
 gi|301640700|gb|ADK86022.1| RNA modification enzyme, MiaB family [Desulfarculus baarsii DSM
           2075]
          Length = 447

 Score =  294 bits (752), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 173/446 (38%), Positives = 258/446 (57%), Gaps = 24/446 (5%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           + ++GCQMN YDS RM  M    GY        ADL++ NTC +R+KA +K+YS LG + 
Sbjct: 12  IATFGCQMNEYDSARMARMLGQMGYIAEADPQKADLVIFNTCSVRDKAEQKLYSALGPLV 71

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
            +K  R     DL++ V GCVAQ EG  +LRR   ++ V+G     +LPEL+  A  G R
Sbjct: 72  KIKRQR-----DLIIGVTGCVAQQEGRRLLRRVAHLDFVLGTAQIDKLPELVHDAAKGLR 126

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
               + S++   E   IV      + G++A +T+  GCD FC++CVVPY RG E SR   
Sbjct: 127 --RAELSLKRASEPAPIV---LPPQVGLSANVTVMRGCDNFCSYCVVPYVRGREQSRPAD 181

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWR--GKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
           QV++E   L+  G  E+ LLGQNV+++R  G+G+      F++LL   + ++GL R+R+ 
Sbjct: 182 QVLEEIAALVAAGAREVVLLGQNVDSYRDPGRGIG-----FAELLRLAAGVEGLWRVRFL 236

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
           TSHP+D+S  LI+       +M  +HLP+QSG D +L +MNR +T  +Y   ++ +R   
Sbjct: 237 TSHPKDLSPELIETLAAEPKVMEQMHLPIQSGDDSVLAAMNRGYTTGQYLAKVEALRRAA 296

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           P++ +  D IVGFPGE+ D F  T++LV+++GY   F F YS R  T  S M  ++D++V
Sbjct: 297 PEVTLGGDIIVGFPGESADAFARTLELVERVGYDTLFCFIYSDRPFTKASRMTGKIDQDV 356

Query: 387 KAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRSPWLQSVVLNS 442
           KA R   LL L ++L  ++   N A VG I EVL+E   K+ +G L GR     +V    
Sbjct: 357 KASRVNQLLELHRRLGRER---NRARVGTIREVLVEGPAKKGQGMLAGRDRGGLAVNFAG 413

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
           +   +G I +V +T    ++L G L 
Sbjct: 414 EAALVGTIQRVLVTQGLTNSLIGRLA 439


>gi|166031818|ref|ZP_02234647.1| hypothetical protein DORFOR_01519 [Dorea formicigenerans ATCC
           27755]
 gi|166028271|gb|EDR47028.1| hypothetical protein DORFOR_01519 [Dorea formicigenerans ATCC
           27755]
          Length = 470

 Score =  294 bits (752), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 180/456 (39%), Positives = 260/456 (57%), Gaps = 30/456 (6%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P  F V ++GCQMN  DS ++  +    GYE   S ++AD ++ NTC +RE A  +VY  
Sbjct: 34  PMTFCVTTFGCQMNARDSEKLRGILLEIGYEEA-SEEEADFVIFNTCTVRENANTRVYGR 92

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQ-AEGEEILRRS-PIVNVVVGPQTYYRLPELLE 141
           LG++++ K    K+   + + + GC+ Q  E  E LR S   V+++ G    Y+  EL+ 
Sbjct: 93  LGQLKSHK----KKNPHMKIALCGCMMQEPEVVEKLRTSYRFVDLIFGTHNIYKFAELIT 148

Query: 142 RARFGKRVV-----DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
               G R+V     DTD  VED        D  Y+ K GV     I  GC+ FC++C+VP
Sbjct: 149 AVYEGGRMVIDIWKDTDKIVEDLPN-----DRKYSFKSGVN----IMFGCNNFCSYCIVP 199

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256
           Y RG E SR    +V E  +L+ +GV E+ LLGQNVN++ GK L+ E   F++LL  + +
Sbjct: 200 YVRGRERSRKPEAIVREIERLVADGVTEVMLLGQNVNSY-GKNLE-EPLPFAELLQKIEQ 257

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           I+GL R+R+ TSHP+D+SD LI+  G    +  +LHLPVQSGS RILK MNR +T  +Y 
Sbjct: 258 IEGLHRIRFMTSHPKDLSDELIEVMGKSKKICKHLHLPVQSGSSRILKKMNRHYTKEQYL 317

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
           +++D+IR+  PDI++++D IVGFPGET++DF  T+D+V K+ Y  AF+F YS R GTP +
Sbjct: 318 ELVDKIRAAVPDISLTTDIIVGFPGETEEDFLETLDIVRKVRYDSAFTFIYSKRTGTPAA 377

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACV---GQIIEVLIEKHGKEKGKLV-GRS 432
            M +QV E V  +R     + L+E Q    + C    G + EVL+E        +V GR 
Sbjct: 378 TMEDQVPEEVVKDR---FDRLLKEVQTIAAEVCAVHEGTVQEVLVESVSDHDDHMVTGRL 434

Query: 433 PWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
                V        IGD + V++   K     GE V
Sbjct: 435 SNNILVHFRGDASMIGDYVNVKLDQCKGFYYIGEQV 470


>gi|42523558|ref|NP_968938.1| hypothetical protein Bd2086 [Bdellovibrio bacteriovorus HD100]
 gi|81617194|sp|Q6MLC6|MIAB_BDEBA RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|39575764|emb|CAE79931.1| conserved hypothetical protein [Bdellovibrio bacteriovorus HD100]
          Length = 453

 Score =  294 bits (752), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 161/444 (36%), Positives = 259/444 (58%), Gaps = 17/444 (3%)

Query: 28  FVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRI 87
           ++ +YGCQMNV D+ RM  +   Q +  V     A LI++N+C +REK   KVYS +G  
Sbjct: 24  YISTYGCQMNVNDTERMYALLEMQNFVPVTDPKKASLIIINSCSVREKPVHKVYSEVGTY 83

Query: 88  RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG- 146
           + +K    ++  +L + V GCV Q E E +++  P+++ V G      LP+L+ ++  G 
Sbjct: 84  KYMK----RKNPELKIGVGGCVGQQEKENLMKTQPMIDFVFGTDQIDSLPQLVAKSFAGE 139

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           +R+V++ +     +   ++V     R  GV  ++ I +GCD FCTFCVVPYTRG E SR 
Sbjct: 140 RRLVNSRFEHRSPYHIETLV-----RNPGVATYVNITKGCDNFCTFCVVPYTRGREKSRP 194

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRG-KGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           +  ++ + R L+  GV E+TLLGQNVN+++G +G+D     F+DLL  +++   + R+RY
Sbjct: 195 VQHILTDIRHLVKRGVKEVTLLGQNVNSYQGDEGID-----FADLLAKVAKETDVERIRY 249

Query: 266 TTSHPRDMSDCLIKAHGDL-DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           TTSHP+D +  L+    +  + +M Y+HLP Q+GS ++L+ MNR +T  EY + I  I+ 
Sbjct: 250 TTSHPKDFNQKLVDVMAEHSNKIMEYIHLPFQAGSTKVLERMNRNYTREEYLERIAMIQK 309

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             P++  S+D IVGFPGET++DF+ T+++V ++G+   F+F YSPR  T  +   +Q+ E
Sbjct: 310 GLPNVCFSTDIIVGFPGETEEDFQDTLNMVTEVGFETIFAFSYSPRPFTKAAKFEDQLPE 369

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
           +VK ERL  L                G  ++VL+E   ++ GK+ GRS   + V      
Sbjct: 370 DVKNERLNRLFDVHEAMAFERVKRYEGTTMKVLVENVDRDHGKMQGRSTGNKLVHFLGTA 429

Query: 445 HNIGDIIKVRITDVKISTLYGELV 468
             IG  + V+IT    +   GE++
Sbjct: 430 DLIGKTVDVKITKAFPAVFRGEMI 453


>gi|257784577|ref|YP_003179794.1| RNA modification enzyme, MiaB family [Atopobium parvulum DSM 20469]
 gi|257473084|gb|ACV51203.1| RNA modification enzyme, MiaB family [Atopobium parvulum DSM 20469]
          Length = 455

 Score =  293 bits (751), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 169/454 (37%), Positives = 262/454 (57%), Gaps = 18/454 (3%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           +V + + +K++GCQMN++D+ R+  +  + G   V+  DDAD+++  TC +RE A +++Y
Sbjct: 7   LVGKTYHIKTFGCQMNLHDTERVSGLLEACGCNEVSDTDDADIVIFMTCSVRENADQRLY 66

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
              G+   + ++     G  +V + GC+AQ +GE++  + P V+VV G      LP LL 
Sbjct: 67  ---GQASAMVSAPTPPSGKRIVAIGGCIAQRDGEKLREKVPAVDVVFGTSALASLPALLT 123

Query: 142 RARFGKR-VVDTDYSVEDK-FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
            A  G+   V  D S E K F      D   NR +   A++ I  GC+ FCT+C+VPY R
Sbjct: 124 SAFRGENDRVAVDISEEGKGFS----TDLPSNRAQQYHAWVPIMTGCNNFCTYCIVPYVR 179

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G E SR+   V+ E  +L+ +GV EITLLGQNVN++ G+ L G K  F++LL ++ +  G
Sbjct: 180 GRERSRTFEAVIGECERLVADGVREITLLGQNVNSY-GRDLYG-KPRFAELLRAVGQT-G 236

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           + R+R+T+S+P+D++D  I A  +   +MP+LHL VQSGS R+LK MNR +T  EY  ++
Sbjct: 237 VERIRFTSSNPKDLTDETIAAMKETPAVMPHLHLAVQSGSTRVLKKMNRSYTREEYLDVV 296

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            R+R+  P +A+S+D IVGFPGET++DF  T+ LV + GY+ A++F YS R GTP +   
Sbjct: 297 SRLRAAIPGLALSTDIIVGFPGETEEDFEETLSLVKEAGYSSAYTFIYSKRPGTPAAKYE 356

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSV 438
           +     V  ER   L + + +Q    N   +     VL+E   K     +VG S   Q+V
Sbjct: 357 DNTPHEVIQERFDRLAELVAQQAHEANQVDLNTTQAVLVEGTSKRDDTVMVGHSEKNQTV 416

Query: 439 VLN-----SKNHNIGDIIKVRITDVKISTLYGEL 467
             N     +    IG I+ V I + +   L G +
Sbjct: 417 HFNLPEGYTSKDLIGKIVDVHIDEARTWYLRGTM 450


>gi|294055618|ref|YP_003549276.1| RNA modification enzyme, MiaB family [Coraliomargarita akajimensis
           DSM 45221]
 gi|293614951|gb|ADE55106.1| RNA modification enzyme, MiaB family [Coraliomargarita akajimensis
           DSM 45221]
          Length = 461

 Score =  293 bits (751), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 173/460 (37%), Positives = 272/460 (59%), Gaps = 29/460 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R ++K+YGCQMN  DS  +  M  ++GY  V S  DAD+I+LNTC +RE+A +K     G
Sbjct: 3   RVYIKTYGCQMNERDSDAVAAMLRAKGYSIVGSESDADVILLNTCSVREQAEQKAIGKAG 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            I     +R K+  +L+V + GC+AQ  G+++L R P ++++VG Q ++R+P+ L+    
Sbjct: 63  HI----TARKKKNPNLVVGIMGCMAQNRGDDLLDRLPDLDLIVGTQKFHRVPDHLD---- 114

Query: 146 GKRVVDTDYSVEDKFERLSIV------DGGYNRKR-------GVTAFLTIQEGCDKFCTF 192
                +   S++ +  R S V       G  N  R        V+AF++I +GC+  C++
Sbjct: 115 -----NMIASLQGQGPRPSTVVDLEAEAGSQNTIREHAEDTVQVSAFVSIMQGCNMKCSY 169

Query: 193 CVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW--RGKGLDGEKCTFSDL 250
           C+VP TRG E +R + Q+VDE + L   G  E+TLLGQ VN +  R      +K  F  L
Sbjct: 170 CIVPKTRGAERARPMDQIVDEIKDLAAKGTKEVTLLGQIVNQYGIREFPFVDKKSPFVQL 229

Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
           L  ++EI G+ R+R+T+ HP    D LI+ +  L  L  YLH P+QSGSDR+LK+M R +
Sbjct: 230 LEKVNEIDGIERIRFTSPHPVGFKDDLIECYARLPKLCEYLHFPMQSGSDRVLKAMRRPY 289

Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370
           +   +R+IID++R++RPDI IS+D IVGFPGETD+DF  T    +++G+  A+ FKYS R
Sbjct: 290 SIERFRRIIDKLRAIRPDIYISTDVIVGFPGETDEDFELTRKHFEEVGFDMAYLFKYSVR 349

Query: 371 LGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLV 429
            GT    + + +   VK +R   L   L ++ +  N++ +G + +VL E   ++ +   +
Sbjct: 350 PGTTAEPLGDPIATEVKEKRNQILLDILGKRSLERNESLLGTVEDVLFEGPARKGENMFM 409

Query: 430 GRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
           GR+   + V++ +    IG ++ VRI     STL+GELV+
Sbjct: 410 GRTRGHRKVIVKASPRLIGQLVPVRIQRATTSTLFGELVL 449


>gi|78188191|ref|YP_378529.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Chlorobium
           chlorochromatii CaD3]
 gi|123770899|sp|Q3AU39|MIAB_CHLCH RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|78170390|gb|ABB27486.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Chlorobium
           chlorochromatii CaD3]
          Length = 449

 Score =  293 bits (751), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 165/450 (36%), Positives = 258/450 (57%), Gaps = 14/450 (3%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P  F++ ++GCQMN  DS  M  +  ++GY   ++  DA +++LNTC +RE A E+V   
Sbjct: 6   PDAFYIHTFGCQMNQADSGIMTAILQNEGYVAASNEADAGIVLLNTCAVREHATERVGHL 65

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           L   ++L   + +  G LLV V GC+ Q E E + +  P+V+ + GP TY  LP L+++ 
Sbjct: 66  L---QHLHGRKKRSKGRLLVGVTGCIPQYEREVLFKNYPVVDFLAGPDTYRSLPLLIKQV 122

Query: 144 R-FGKRVVDTDYSVEDKFERLSIVDGGYN-RKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           +  GK   +   +    F      DG    R   ++AF+ +  GC+  C +CVVP TRG 
Sbjct: 123 QQAGKGATEAALA----FNSAETYDGIEPVRSSSMSAFVPVMRGCNNHCAYCVVPLTRGR 178

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E S   + V++E R+L + G  EITLLGQNVN++        +C F++LL ++S      
Sbjct: 179 ERSHPKAAVLNEVRQLAEAGYREITLLGQNVNSYYDPL---AQCNFAELLAAVSCAAPAT 235

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHP+D+S+ L++   +   +  ++HLPVQSGS RIL+ M R HT  EY + I  
Sbjct: 236 RIRFTTSHPKDISEALVRTIAEHSNICNHIHLPVQSGSSRILRLMQRGHTIEEYLEKIAL 295

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML-E 380
           IRS+ P++ +S+D I GF GET+ D +AT+ L++++ +  AF F YSPR  TP +  L +
Sbjct: 296 IRSLIPNVTLSTDMIAGFCGETEADHQATLRLLEEVQFDSAFMFYYSPRPRTPAAEKLTD 355

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLVGRSPWLQSVV 439
            V E +K  RL  + +       S     VG ++EVL E   +    +L+GR+   ++VV
Sbjct: 356 DVPEALKKARLQEIIECQNRISASLFSQAVGSVVEVLAEAESRRSSEQLMGRTAGNRTVV 415

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELVV 469
                +  GD++ VRIT    +TL GE ++
Sbjct: 416 FARNGYQAGDVLHVRITGSTSATLLGEPLI 445


>gi|304438410|ref|ZP_07398350.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Selenomonas sp. oral
           taxon 149 str. 67H29BP]
 gi|304368493|gb|EFM22178.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Selenomonas sp. oral
           taxon 149 str. 67H29BP]
          Length = 437

 Score =  293 bits (751), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 170/445 (38%), Positives = 257/445 (57%), Gaps = 14/445 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R+ +  YGCQMNV D+ RME    + GY R     DAD+I++NTC +RE A +KVY  +G
Sbjct: 4   RYKILVYGCQMNVADAERMEGQLQAAGYVRTEKTADADVILINTCCVRETAEDKVYGKIG 63

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-ERAR 144
            I+ +K    +    L+  + GC+AQ EGE ++RR+P ++ V+G      L  ++ E A 
Sbjct: 64  EIKKVKEHHPQ----LIFGITGCMAQKEGENLMRRAPHIDFVLGTGKVQELGRIVAEIAA 119

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
               VVD         E L I  GG      ++A++ I  GC+ +CT+C+VPY RG E S
Sbjct: 120 ERAPVVDVALDAHAVEEDLPIARGGT-----LSAWVPIMYGCNNYCTYCIVPYVRGRERS 174

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R+  +VV E R+   +G  E+TLLGQNVN++   G D  +  F+DLL  +  ++G+ R+R
Sbjct: 175 RTPEEVVAEVRRAAADGYREVTLLGQNVNSY---GKDHGQADFADLLRMVDAVEGIRRVR 231

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           + TSHP+D+SD LI    +   +  ++HLPVQ GS+RILK+MNR +T  +YR+   R+R 
Sbjct: 232 FMTSHPKDISDKLIDTIKNGTHICEHIHLPVQYGSNRILKAMNRVYTVEQYRERARRVRE 291

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             P  ++++D IVGFPGET++DF  T+D + ++ Y  A++F YS R GTP + M  QV +
Sbjct: 292 ALPGASLTTDLIVGFPGETEEDFAETLDFLREMRYDAAYTFLYSKRSGTPAAAMAAQVPD 351

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVLNSK 443
            VK  RL  L     E   + N+       EV++E   K +     GR+   + V+    
Sbjct: 352 EVKHARLERLMAVQNEISRAINEGLRSAQAEVMVEGASKNDPAVWSGRTRTNKIVLFPHG 411

Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468
              +GD ++V+IT  +   L GE+V
Sbjct: 412 AERVGDFVQVKITQPQTWVLKGEVV 436


>gi|238063462|ref|ZP_04608171.1| RNA modification protein [Micromonospora sp. ATCC 39149]
 gi|237885273|gb|EEP74101.1| RNA modification protein [Micromonospora sp. ATCC 39149]
          Length = 511

 Score =  293 bits (751), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 163/417 (39%), Positives = 250/417 (59%), Gaps = 21/417 (5%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDD-ADLIVLNTCHIREKAAEKVYS 82
           P+ + V++YGCQMNV+DS R+  +    GY R    DD  D++V NTC +RE A  ++Y 
Sbjct: 9   PRTYQVRTYGCQMNVHDSERISGLLEQAGYVRAAEADDNPDVVVFNTCAVRENADNRLYG 68

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            LG +R +K+   K  G + + V GC+AQ +  +I+R++P V+VV G      LP LLER
Sbjct: 69  NLGHLRPVKD---KHPG-MQIAVGGCLAQKDRGDIVRKAPWVDVVFGTHNIGSLPALLER 124

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT--AFLTIQEGCDKFCTFCVVPYTRG 200
           AR      +    VE   E L +       +R  T   +++I  GC+  CTFC+VP  RG
Sbjct: 125 ARH-----NAAAEVE-ILESLDVFPSTLPTRRESTYAGWVSISVGCNNTCTFCIVPALRG 178

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKG 259
            E  R    V+ E R L+D+GV E+TLLGQNVN++   G++ G++  F  LL +  EI G
Sbjct: 179 REKDRRPGDVLAEVRALVDSGVLEVTLLGQNVNSY---GVEFGDRYAFGKLLRACGEIDG 235

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           L R+R+T+ HP+D +D +I A  +   +   LH+P+QSGSD +L++M R + +  Y  II
Sbjct: 236 LERVRFTSPHPKDFTDDVIAAMAETPNVCHSLHMPLQSGSDDVLRAMRRSYRSERYLGII 295

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
           +R+R+  PD AI++D IVGFPGET+ DF+ T+D+V +  ++ AF+F+YS R GTP + M 
Sbjct: 296 ERVRAAMPDAAITTDIIVGFPGETEADFQRTLDVVREARFSSAFTFQYSKRPGTPAATMP 355

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE----KHGKEKGKLVGRS 432
           +Q+ + V  ER   L   + E   + N   +G+ +EVL+     +  +  G++ GR+
Sbjct: 356 DQLPKQVVQERYERLIATVEEITWAENRKLIGETVEVLVAVGEGRKDERTGRMSGRA 412


>gi|229890680|sp|B1ZVI7|MIAB_OPITP RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
          Length = 480

 Score =  293 bits (750), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 171/472 (36%), Positives = 262/472 (55%), Gaps = 32/472 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R  +K+YGCQMN  DS  +  M  ++GY  V   +D D+++LNTC +R+ A +K     G
Sbjct: 3   RVHIKTYGCQMNERDSEAVAAMLRARGYRIVADENDCDILLLNTCSVRDAAEQKAIGKAG 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR- 144
            ++  K    K+  D ++ + GC+AQ  G  +L + P V+++VG Q ++++P  L+  R 
Sbjct: 63  YLQQRK----KKQPDFVLGILGCMAQNRGASLLDQLPDVDLIVGTQKFHQVPGYLDNLRA 118

Query: 145 -------FGKRVVD-----------------TDYSVEDKFERL-SIVDGGYNRKRGVTAF 179
                   G+ +VD                  D   + +   L S + G       +TAF
Sbjct: 119 ARDAGVPIGETIVDIGEEAGSQNTIKDHLLPQDSDSDSQPSTLNSQLRGAAAPPPQITAF 178

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW--RG 237
           ++IQ+GC+  C FC+VP TRG E SR +  +V E  +L   GV E+TLLGQ V ++  R 
Sbjct: 179 VSIQQGCNMDCAFCIVPKTRGDERSRPMDDIVRECEQLAARGVREVTLLGQIVTSYGRRD 238

Query: 238 KGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQS 297
                    F  LL  +  + G+ R+R+T+ HPR   D L+ A+G L  L  Y+HLP+QS
Sbjct: 239 YTHTNGISPFVQLLERVHALDGIERIRFTSPHPRGFKDDLVAAYGRLPKLCGYVHLPLQS 298

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
           GS+RIL++MNR +T   YR+I+D +R+VR D+  S+D IVGFPGETD+DF  T +L +  
Sbjct: 299 GSNRILRAMNRPYTRERYREIVDALRAVRSDMYFSTDVIVGFPGETDEDFEQTRELFEAC 358

Query: 358 GYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVL 417
            Y  A+ FKYS R GTP +   +QV E+VK +R   L + LR+     N   +  + EVL
Sbjct: 359 NYDMAYVFKYSVRTGTPAAERGDQVPEDVKEQRNQLLLELLRQNSERRNALLLDTVEEVL 418

Query: 418 IEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
           +E   K   +  GR+   +  +  +    +G ++ +RIT   +STLYGEL++
Sbjct: 419 VEGPDKTGQRFTGRTRGNRVCIFEATPDLVGRLVSLRITRASVSTLYGELML 470


>gi|314936546|ref|ZP_07843893.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus hominis
           subsp. hominis C80]
 gi|313655165|gb|EFS18910.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus hominis
           subsp. hominis C80]
          Length = 514

 Score =  293 bits (750), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 163/446 (36%), Positives = 263/446 (58%), Gaps = 15/446 (3%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           F +K+YGCQMN +D+  M  +  +  Y+  + +++AD+I++NTC IRE A  KV+S +G 
Sbjct: 70  FLIKTYGCQMNAHDTEVMAGILQALDYQATDDINEADVILINTCAIRENAENKVFSEIGN 129

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           +++LK +R     + L+ V GC++Q E    +IL+    V+++ G    ++LPE+LE A 
Sbjct: 130 LKHLKKNR----PETLIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHKLPEILEEAY 185

Query: 145 FGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             K +V   +S E D  E L  V     R+    A++ I  GCDKFCT+C+VP+TRG E 
Sbjct: 186 LSKAMVVEVWSKEGDVIENLPKV-----REGSTKAWVNIMYGCDKFCTYCIVPFTRGKER 240

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR    +++E R+L   G  EITLLGQNVN++ GK +        DLL  +S I  + R+
Sbjct: 241 SRRPQDIIEEVRELAREGYKEITLLGQNVNSY-GKDIKDLDYGLGDLLEDISNI-DIPRV 298

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+TTSHP D +D +I+       ++P++HLPVQSG++ +LK M R+++   Y  ++DRI+
Sbjct: 299 RFTTSHPWDFTDRMIEVIAKGGNIVPHIHLPVQSGNNAVLKIMGRKYSRESYLDLVDRIK 358

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              P++A+++D IVG+P ET++ F  T+ L D++ +  A+++ YS R GTP + M + V 
Sbjct: 359 EAIPNVALTTDIIVGYPNETEEQFEETLSLYDEVQFEHAYTYLYSQRDGTPAAKMKDNVP 418

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSPWLQSVVLNS 442
             VK +RL  L KK+ +          GQ++ VL E    K++  L G +   + V    
Sbjct: 419 TEVKKDRLQRLNKKVGQYSEKAMQNYEGQVVTVLCEGTSKKDETVLAGYTEKNKLVNFKG 478

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
               IG ++ V++ + K  +L GE +
Sbjct: 479 PREAIGQLVDVKVKEAKQYSLNGEFL 504


>gi|163839482|ref|YP_001623887.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Renibacterium
           salmoninarum ATCC 33209]
 gi|229890623|sp|A9WQ47|MIAB_RENSM RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|162952958|gb|ABY22473.1| tRNA 2-methylthioadenosine synthase [Renibacterium salmoninarum
           ATCC 33209]
          Length = 515

 Score =  293 bits (750), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 165/454 (36%), Positives = 268/454 (59%), Gaps = 31/454 (6%)

Query: 19  DQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAE 78
           D+ + P+ + V++YGCQMNV+DS RM  +    G  +      AD++V NTC +RE A  
Sbjct: 15  DESVTPRTYEVRTYGCQMNVHDSERMAGLLERSGLVKAEG-KVADVVVFNTCAVRENADN 73

Query: 79  KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPE 138
           K+Y  LG +   K +       + + V GC+AQ + + IL+R+P V+VV G      LP 
Sbjct: 74  KLYGNLGMLAPAKEANP----GMQIAVGGCLAQKDRDTILKRAPWVDVVFGTHNVGALPT 129

Query: 139 LLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGV--TAFLTIQEGCDKFCTFCVVP 196
           LLERAR  +       +  +  E L +       KR    + +++I  GC+  CTFC+VP
Sbjct: 130 LLERARHNEE------AQLEILESLDVFPSTLPTKRDAVYSGWVSISVGCNNTCTFCIVP 183

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLS 255
             RG E  R    ++ E + L+++G  E+TLLGQNVN++   G++ G++  FS LL +  
Sbjct: 184 SLRGKEKDRRPGDILAEIQALVEDGAIEVTLLGQNVNSY---GVEFGDRQAFSKLLRACG 240

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
           EI+GL R+R+T+ HP   ++ +I+A  +   +MP LH+P+QSGSD++LK M R + + ++
Sbjct: 241 EIEGLERVRFTSPHPAAFTEDVIEAMAETHNVMPQLHMPLQSGSDKVLKDMRRSYRSSKF 300

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
             I+D++R+  PD AIS+D IVGFPGET++DF+AT+D+V K  +A AF+F+YS R GTP 
Sbjct: 301 LGILDKVRTQIPDAAISTDIIVGFPGETEEDFQATLDVVAKSRFATAFTFQYSKRPGTPA 360

Query: 376 SNMLEQVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIE----KHGKEKGKL 428
           +++ +Q+ + V   + ERL  LQ ++  ++   N   +G+ +E+++     K   E  +L
Sbjct: 361 ADLPDQLPKAVVQERFERLTALQDQISAEE---NARQIGREVELMVTAGSGKKAAETQRL 417

Query: 429 VGRSPWLQ----SVVLNSKNHNIGDIIKVRITDV 458
            GR+   +    +V    +    GD++ V IT+ 
Sbjct: 418 SGRAKDSRLVHFAVPEGEETPRPGDLVTVTITEA 451


>gi|56963955|ref|YP_175686.1| 2-methylthioadenine synthetase [Bacillus clausii KSM-K16]
 gi|81366024|sp|Q5WFY0|MIAB_BACSK RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|56910198|dbj|BAD64725.1| 2-methylthioadenine synthetase [Bacillus clausii KSM-K16]
          Length = 520

 Score =  293 bits (750), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 174/468 (37%), Positives = 271/468 (57%), Gaps = 16/468 (3%)

Query: 5   IKLIGVAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADL 64
           ++++   +++ + V      ++F +++YGCQMNV+DS  M  +    G+E     ++AD+
Sbjct: 57  VQVLRPENLIPEEVANLGAGKKFLIRTYGCQMNVHDSENMSGLLLGMGFEETTETEEADI 116

Query: 65  IVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSP 122
           I+LNTC IRE A  KV+  +G ++ LK     E  +L++ V GC++Q E    +I+ +  
Sbjct: 117 ILLNTCAIRENAENKVFGEIGNLKPLK----LEKPELIIGVCGCMSQEESVVGKIMEKHQ 172

Query: 123 IVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLT 181
            ++++ G    +RLP LL  A FGK +V   +S E D  E +       +RK    A++ 
Sbjct: 173 HIDLIFGTHNIHRLPHLLRDAIFGKEMVIEVWSKEGDIVENMP-----RSRKNKTQAWVN 227

Query: 182 IQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD 241
           I  GCDKFCT+C+VPYTRG E SR    ++ E R L   G  EITLLGQNVNA+ GK L 
Sbjct: 228 IMYGCDKFCTYCIVPYTRGKERSRLPEDIIAEVRDLARQGYKEITLLGQNVNAY-GKDLP 286

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
           G      DL+  + +I  + R+R+TTSHPRD  D LI+       L+ ++HLPVQ G+  
Sbjct: 287 G-SYRLGDLMNEIHKID-IPRVRFTTSHPRDFDDHLIEVLAQGGNLVEHIHLPVQHGNSD 344

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
           ILK M R++T  +Y  + ++I+   P+ + ++D IVGFP ET++ F+  + LV++I +  
Sbjct: 345 ILKLMGRKYTREQYITLANKIKQAIPNASFTTDLIVGFPNETEEQFQDMLSLVEEIQFDA 404

Query: 362 AFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKH 421
           A+++ YSPR GTP + M + V  +VK ERL  L   + +     N     +I+EVL+E  
Sbjct: 405 AYTYIYSPREGTPAARMEDNVPMSVKKERLARLNALVNDISNKRNLDYQDKIVEVLVEGE 464

Query: 422 GKEKGK-LVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            K+    L GR+   + V        IG+I+ V+IT+ K  +L GE+V
Sbjct: 465 SKKNTDVLAGRTRTNRLVNFVGPKSAIGEIVYVKITEAKTWSLDGEIV 512


>gi|229890670|sp|Q2RZF8|MIAB_SALRD RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
          Length = 503

 Score =  293 bits (750), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 163/447 (36%), Positives = 262/447 (58%), Gaps = 9/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ ++++YGCQMNV DS  +  +    GY        AD+++LNTC IRE A  K+ + L
Sbjct: 42  KQVYIETYGCQMNVNDSGIVASVLEESGYGLTRDQAAADVVLLNTCAIRENAERKIRARL 101

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-ERA 143
             +R+ K  R    G+L++ V GC+A+   E++L +  +V+VVVGP  Y  LP+LL E  
Sbjct: 102 SMLRSEKEKR---DGELMLGVLGCMAERLREKLLEQEDLVDVVVGPDAYRDLPQLLYEAD 158

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             G+  V+ + S ++ +E +  V    N   GV+A+++I  GCD  CTFCVVP+TRG E 
Sbjct: 159 ATGQAAVNVELSKQETYEDIQPVRYDSN---GVSAYVSIMRGCDNMCTFCVVPFTRGREE 215

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR ++ ++ E  +L + G  E+TLLGQNVN++     DG   +F++L+  +S +   +R+
Sbjct: 216 SRPVTTILSEVARLAEEGYKEVTLLGQNVNSYHYTDADGTSVSFAELVDRVSRVSPEMRV 275

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           RY+TSHP+D +D L+K H D   +  Y+HLPVQ G+  +L  M R +T  EY  + +R +
Sbjct: 276 RYSTSHPKDCTDDLLKVHRDRPNVCNYIHLPVQHGNTEVLDRMRRTYTREEYLALTERAK 335

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE-QV 382
            + P +++S+D I GF GET+     T+ L++++ Y  A+ FKYS R  T  +   E  V
Sbjct: 336 ELCPGVSLSTDLIAGFCGETEAQHEDTLSLMEEVRYDHAYMFKYSERPQTYAARKYEDDV 395

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441
            E+ K  RL  + +   +     N+A VG++  VL+E   K+   +  GR+   + VV +
Sbjct: 396 PEDTKQRRLEEIIELQNQHAKESNEAEVGRVHTVLVEGPSKKSDAQFFGRTDTNKGVVFD 455

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
            +++  GD ++VRI D   STL G  +
Sbjct: 456 REDYEKGDYVRVRIEDCTSSTLLGTAI 482


>gi|315225572|ref|ZP_07867382.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Capnocytophaga ochracea
           F0287]
 gi|314944516|gb|EFS96555.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Capnocytophaga ochracea
           F0287]
          Length = 482

 Score =  293 bits (749), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 173/457 (37%), Positives = 259/457 (56%), Gaps = 22/457 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ +++SYGCQMN  DS  +  +    GY   +++DDADL+++NTC +REKA + +   L
Sbjct: 24  KKLYIESYGCQMNFSDSEIVASILSKAGYNTTDTVDDADLVLINTCSVREKAEQTIRKRL 83

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            +    K  +      + V V GC+A+      L    IV++VVGP  Y  LP LLE   
Sbjct: 84  EQFNVYKRKKPA----MKVGVLGCMAERVKHAFLEEEKIVDMVVGPDAYKDLPNLLEEVE 139

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G+  V+   S ++ +  ++ +    N   GVTAF++I  GCD  CTFC+VP+TRG E S
Sbjct: 140 EGREAVNVILSKDETYADIAPIRLNSN---GVTAFVSITRGCDNMCTFCIVPFTRGRERS 196

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNA--WRGKGL--DGEKCT---------FSDLL 251
           R    +++E   L   G  E+TLLGQNV++  W G GL  D  K +         F+ LL
Sbjct: 197 RDPYSILNEIADLQARGFKEVTLLGQNVDSYLWYGGGLKKDFSKASEMQQATAINFAKLL 256

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
             ++  +  +R+R++TS+P+DM+  +I        +  Y+HLPVQSGS+RILK+MNR HT
Sbjct: 257 DMVATAQPEMRIRFSTSNPQDMTLDVIDTMAKHPNICKYIHLPVQSGSNRILKAMNRLHT 316

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
             EY  +ID IR   P+ AIS D I GFP ET+DD + T+ L++ + Y   F F YS R 
Sbjct: 317 REEYFALIDSIRERIPECAISQDMIAGFPTETEDDHQDTLSLMEYVKYDFGFMFAYSERP 376

Query: 372 GTPGSNMLE-QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LV 429
           GT  +  +E  V E VK  RL  +    ++  +    A +G+ +EVLIE + K+  K  +
Sbjct: 377 GTLAARKIEDDVPEEVKKRRLAEIIDLQQKHSLYRTQAQIGKTVEVLIEGNSKKSDKEWM 436

Query: 430 GRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGE 466
           GR+     VV   +++ IGD + V+ITD   +TL G+
Sbjct: 437 GRNSQNTVVVFPKEDYKIGDFVMVKITDCTSTTLIGK 473


>gi|258645507|ref|ZP_05732976.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Dialister invisus DSM
           15470]
 gi|260402861|gb|EEW96408.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Dialister invisus DSM
           15470]
          Length = 478

 Score =  293 bits (749), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 162/459 (35%), Positives = 266/459 (57%), Gaps = 20/459 (4%)

Query: 17  IVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA 76
           I+ +    +++F+++YGCQMN  D+ R+       GY   + +DDAD+++LNTC IR+ A
Sbjct: 32  ILKEVSFDKKYFIETYGCQMNESDTERISGQLEELGYVPADILDDADVVILNTCSIRQNA 91

Query: 77  AEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL 136
            EKVY  +G ++ LK  +      +L+ +AGC+AQ    +++ R P+++ V+GP   + L
Sbjct: 92  EEKVYGKIGEVKKLKGKK----PGVLLGIAGCMAQENKGKLIERMPVIDFVIGPYHIHDL 147

Query: 137 PELLER-ARFGKRVVDTDYS---VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTF 192
            +++ R    G  VV T  +   V D  E  S+      RK  + A++ I +GC+KFCT+
Sbjct: 148 KDIVSRRGAEGSHVVMTQMNPNRVNDYSELHSV------RKSRIFAWVPIMQGCNKFCTY 201

Query: 193 CVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT-FSDLL 251
           C+VPY RG E SR++  +  E  KL   G  EITLLGQNVN++   GLD    T F  L+
Sbjct: 202 CIVPYVRGRETSRTIDDICREIEKLAREGYKEITLLGQNVNSY---GLDFHDGTDFGSLI 258

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
           +++ +I G+ R+RY TSHP+DM+  ++ A      ++ ++HLPVQ G++ IL+ MNR +T
Sbjct: 259 HAIDKIDGIKRVRYMTSHPKDMTFGMVDAMAASPKVVRHMHLPVQHGANEILRRMNRGYT 318

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
              +++++  +R   P I +++D I GFPGET+D    T+ L+ ++ +  A++F YSPR 
Sbjct: 319 IERFKELLKYVREKMPGITVTTDLITGFPGETEDMHEETLTLLKEMKFDSAYTFIYSPRR 378

Query: 372 GTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVG 430
           GTP + M  QV + V   RL  +     E  +S N    G++  V+ E   K+      G
Sbjct: 379 GTPAARMTNQVSDAVCHRRLQEIMNVENEISLSLNKEMEGKVYTVIAEGETKQNPDNWFG 438

Query: 431 RSPWLQSVVL-NSKNHNIGDIIKVRITDVKISTLYGELV 468
           R+   + V+   + + ++GDI+KVR+   +   L G +V
Sbjct: 439 RTSGNKMVIFPKAGSLSVGDILKVRVDTAQTWILKGTIV 477


>gi|227549086|ref|ZP_03979135.1| tRNA 2-methylthioadenosine synthase [Corynebacterium
           lipophiloflavum DSM 44291]
 gi|227078868|gb|EEI16831.1| tRNA 2-methylthioadenosine synthase [Corynebacterium
           lipophiloflavum DSM 44291]
          Length = 512

 Score =  293 bits (749), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 161/455 (35%), Positives = 264/455 (58%), Gaps = 32/455 (7%)

Query: 24  PQRFF-VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           P R + V+++GCQMNV+DS R+  M    GY       + DL+V NTC +R+ A +++Y 
Sbjct: 17  PARTYEVRTFGCQMNVHDSERLSGMLEEAGYVAAADGAEPDLVVFNTCAVRDNADQRLYG 76

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            LG++++ K++       + + V GC+AQ + + ++ ++P V+ V G      LP LL+R
Sbjct: 77  SLGQLKHTKDNHP----GMQIAVGGCLAQKDRDTVIEKAPWVDAVFGTHNISALPALLDR 132

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           AR  +   +    V +  E    V     R+     +++I  GC+  CTFC+VP  RG E
Sbjct: 133 ARVSE---EAQVEVVEALEVFPSVLPA-KRESSYAGWVSISVGCNNTCTFCIVPSLRGKE 188

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE----KCTFSDLLYSLSEIK 258
           + R    ++ E   L+  GV E+TLLGQNVNA+    +D E    +  FS LL +  EI+
Sbjct: 189 LDRRPGDILAEVTALVQQGVSEVTLLGQNVNAYGVNFVDEELGRDRSAFSKLLRACGEIQ 248

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           GL R+R+T+ HP + +  +I A  +   + P LH+P+QSGSD++LK M R + + ++  I
Sbjct: 249 GLERVRFTSPHPAEFTSDVIDAMAETPNVCPQLHMPLQSGSDKVLKDMRRSYRSKKFLGI 308

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           +D +R+  P  +I++D IVGFPGET++DF+AT+D+V+K  +  AF+F+YSPR GTP + M
Sbjct: 309 LDEVRAKLPHASITTDIIVGFPGETEEDFQATLDVVEKARFTSAFTFQYSPRPGTPAATM 368

Query: 379 LEQVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG----KLVGR 431
             QV + V   + ERL+ LQ+++  ++   N   VG  +E+L++  G +K     ++ GR
Sbjct: 369 DNQVPKEVVQERFERLVALQERISAEE---NAKLVGTEVELLVQAAGGKKNDSTKRMSGR 425

Query: 432 SPWLQSVVLNSKNHNI-------GDIIKVRITDVK 459
           +      +++   H +       GDI+ V +TD K
Sbjct: 426 A--RDGRLVHFAVHGLIDASVRPGDIVTVTVTDAK 458


>gi|78357421|ref|YP_388870.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
 gi|123741239|sp|Q30YS1|MIAB_DESDG RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|78219826|gb|ABB39175.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 464

 Score =  293 bits (749), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 179/467 (38%), Positives = 266/467 (56%), Gaps = 41/467 (8%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           F + ++GCQMNV DS  +     ++G+ +V    +A + ++NTC +R+K  +KVYS LGR
Sbjct: 6   FHIMTFGCQMNVNDSDWLARALEARGFTQVPE-HEAAIYIINTCSVRDKPEQKVYSLLGR 64

Query: 87  IR-NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER--A 143
           IR   KN R     ++ V V GCVAQ  G+   +R   V +V G       P+ +ER   
Sbjct: 65  IRRETKNRR-----NVTVCVGGCVAQQIGKGFFKRFSQVRLVFGTDGAASAPQAIERLVQ 119

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGY-NRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
               R+   D+S E+  ER    D G+ N +  V+A++ I +GC+ FC +C+VPYTRG +
Sbjct: 120 EPHARISLLDFS-EEFPER----DAGWENGEVPVSAYVNIMQGCNNFCAYCIVPYTRGRQ 174

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD--GEKCTFSDLLYSLSEIKGL 260
            SRS + V+DE R L+ NG  EITLLGQNVN++   GLD  G+  TF+ LL+ ++ I GL
Sbjct: 175 KSRSSAAVLDECRTLVGNGAREITLLGQNVNSY---GLDPHGDGTTFARLLHDVAAIPGL 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            RLR+ T HP+D++  +I+A G L  L P +HLP+QSGSDR+LK+M R++    Y  I+ 
Sbjct: 232 ERLRFMTPHPKDIAGEVIEAFGALKNLCPRVHLPLQSGSDRVLKAMGRKYDMARYMDIVT 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           R+++VRPDI I+SD IVGFPGET+ DF  T++ +  + + Q+FSF YS R GT    +  
Sbjct: 292 RLKAVRPDIQITSDLIVGFPGETEADFEQTLEAMRTVPFVQSFSFIYSDRPGTRAEMLPG 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-------------------EKH 421
           ++    K  RL+ LQ+   E   +   A VG+ + VL                    E+ 
Sbjct: 352 KLSREEKTARLVRLQEVQNEYSEAALQAMVGKTVMVLFESPSPKSAAGSGTDAQNAAEES 411

Query: 422 GKEKGKLVGRSP--WLQSVVLNSKNHNIGDIIKVRITDVKISTLYGE 466
           G+      GR    ++ +V L +     G I+ V +T  +  +L GE
Sbjct: 412 GRTASSWQGRDEHGFILNVHLPAPADLYGKIMPVTVTAARKHSLTGE 458


>gi|305681499|ref|ZP_07404306.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Corynebacterium
           matruchotii ATCC 14266]
 gi|305659704|gb|EFM49204.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Corynebacterium
           matruchotii ATCC 14266]
          Length = 531

 Score =  293 bits (749), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 161/449 (35%), Positives = 261/449 (58%), Gaps = 27/449 (6%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           + V+++GCQMNV+DS R+  +    GY+ V + +  DLIV NTC +RE A  ++Y  LG 
Sbjct: 31  YEVRTFGCQMNVHDSERLSGLLEDAGYQPVVAGNTPDLIVFNTCAVRENADMRLYGTLGS 90

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           +R++K         + + V GC+AQ + + +++++P V+VV G      LP LL+RA   
Sbjct: 91  LRSVKERH----PGMQIAVGGCLAQKDKDAVVKKAPWVDVVFGTHNIGSLPALLKRASHN 146

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
            +    +  + D  E+   V     R+     ++++  GC+  CTFC+VP  RG EI R 
Sbjct: 147 HQA---EVEIVDALEQFPSVLPA-KRESAYAGWVSVSVGCNNTCTFCIVPSLRGKEIDRR 202

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAW----RGKGLDGEKCTFSDLLYSLSEIKGLVR 262
              ++ E + L+D GV E+TLLGQNVNA+        L  ++  FS LL +  EI GL R
Sbjct: 203 PGDILAEVQALVDQGVVEVTLLGQNVNAYGVNFADPDLPRDRSAFSRLLRACGEITGLER 262

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+T+ HP + +  +I A  +   + P LH+P+QSGSD++LK M R +   ++  I+D +
Sbjct: 263 VRFTSPHPAEFTSDVIDAMAETPTVCPQLHMPLQSGSDKVLKEMRRSYRTKKFLAILDEV 322

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R   P  AI++D IVGFPGET++DF+AT+D+V+K  +  AF+F+YSPR GTP +   +QV
Sbjct: 323 RQKIPHAAITTDIIVGFPGETEEDFQATLDVVEKARFTSAFTFQYSPRPGTPAAEYEQQV 382

Query: 383 DENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG----KLVGRS--- 432
            + V   + ERL+ LQ+++  ++   N   V   +E+L++  G +K     ++ GR+   
Sbjct: 383 PKEVVQERYERLIALQERVCLEE---NQKLVNTEVELLVQADGGKKNAKTHRMTGRARDG 439

Query: 433 PWLQSVVLNSKNHNI--GDIIKVRITDVK 459
             +    + S + +I  GDII   +T+ K
Sbjct: 440 RLVHFHPVGSIDQSIRPGDIITTTVTEAK 468


>gi|253583333|ref|ZP_04860531.1| tRNA 2-methylthioadenosine synthase [Fusobacterium varium ATCC
           27725]
 gi|251833905|gb|EES62468.1| tRNA 2-methylthioadenosine synthase [Fusobacterium varium ATCC
           27725]
          Length = 436

 Score =  293 bits (749), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 159/441 (36%), Positives = 267/441 (60%), Gaps = 16/441 (3%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           +YGCQMNV +S +++ +F + GYE   +++++D I LNTC +RE AA ++Y  LG ++++
Sbjct: 8   TYGCQMNVNESAKIKKIFQNIGYEITENIEESDAIFLNTCTVREGAATQIYGKLGELKHI 67

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE--RARFGKR 148
           K  R       ++ + GC AQ +G+E+L++ P +++++G Q   R+P+ ++    +  K 
Sbjct: 68  KEKR-----GSIIGITGCFAQEQGKELLKKFPQIDIIMGNQNIGRIPQAIDDIEHKTNKH 122

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           ++ TD   ED  E    +D  ++ K+  TA ++I  GC+ FCT+C+VPY RG E S  L 
Sbjct: 123 IIYTD--CED--ELPPRLDADFDSKK--TASISITYGCNNFCTYCIVPYVRGRERSVPLD 176

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
           +++ + ++ ++ G  EI LLGQNVN++     +G+   F+ LL  + +++G   +R+ + 
Sbjct: 177 EIIHDVKQYVEKGYKEIILLGQNVNSYGKDFKNGD--NFAKLLEEICKVEGDFLVRFISP 234

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
           HPRD SD +I      D +   LHLP+QSGS RILK MNR +T  +Y  + ++I+   P 
Sbjct: 235 HPRDFSDEVIDVIAKNDKIAKSLHLPLQSGSTRILKMMNRGYTKEQYIALAEKIKEKIPG 294

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           +A+++D IVGFPGET++DF  T+D+V +I +  +F F YS R GT  ++M  Q+D  VK 
Sbjct: 295 VALTADIIVGFPGETEEDFLDTLDVVKRIQFENSFMFMYSIRQGTKAADMDNQIDSEVKK 354

Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRSPWLQSVVLNSKNHNI 447
           ERL  L +      ++ ++   G+I+ +L+E   K+ K  L GR+   + V+        
Sbjct: 355 ERLQRLIEVQNSCSLAESETYRGKIVRILVEGESKKNKDVLTGRTSTNKIVLFKGDKSLE 414

Query: 448 GDIIKVRITDVKISTLYGELV 468
           G  + V+I D K  TLYG++V
Sbjct: 415 GTFVNVKINDCKTWTLYGDIV 435


>gi|150003734|ref|YP_001298478.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacteroides
           vulgatus ATCC 8482]
 gi|294777449|ref|ZP_06742900.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacteroides vulgatus
           PC510]
 gi|229890425|sp|A6KZJ2|MIAB_BACV8 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|149932158|gb|ABR38856.1| conserved hypothetical protein [Bacteroides vulgatus ATCC 8482]
 gi|294448517|gb|EFG17066.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacteroides vulgatus
           PC510]
          Length = 456

 Score =  293 bits (749), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 167/451 (37%), Positives = 269/451 (59%), Gaps = 20/451 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F+++YGCQMNV DS  +  +    GY    ++D+AD + +NTC IR+ A +K+ + L
Sbjct: 18  KKLFIETYGCQMNVADSEVIASIMQMAGYHVCETLDEADAVFMNTCSIRDNAEQKILNRL 77

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
               ++K ++ +   +L+V V GC+A+   ++++     V++VVGP  Y  LP+L+    
Sbjct: 78  EFFHSMKKNKRR---NLIVGVLGCMAERVKDDLIENHH-VDLVVGPDAYLTLPDLVASVE 133

Query: 145 FGKRVVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            G++ ++ + S  + +  +  S + G +     ++ F++I  GC+ FC +C+VPYTRG E
Sbjct: 134 AGEKAINVELSTTETYREVIPSRICGNH-----ISGFVSIMRGCNNFCHYCIVPYTRGRE 188

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR +  +++E R L D G  E+TLLGQNVN++R +  +GE  TF  LL +++E    +R
Sbjct: 189 RSRDVESILNEVRDLADKGYKEVTLLGQNVNSYRFEK-EGEIITFPMLLRTVAEAVPDMR 247

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP+DMSD  ++   +   +  ++HLPVQSGS RILK MNR++T   Y + +  I
Sbjct: 248 VRFTTSHPKDMSDETLQVIAETPNVCKHIHLPVQSGSSRILKLMNRKYTREWYLERVAAI 307

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML-EQ 381
           R + PD  +S+D   G+  ET++D + ++ L+ +  Y  AF FKYS R GT  S  L + 
Sbjct: 308 RRIIPDCGLSTDIFSGYHSETEEDHQESLSLMRECAYDSAFMFKYSERPGTYASKHLPDD 367

Query: 382 VDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQS 437
           V E VK  RL   + LQ +L  +    N   VG+  EV++E   K  + +L GR+   + 
Sbjct: 368 VPEEVKIRRLNEIIELQNRLSAES---NARDVGKTFEVMVEGVSKRSREQLFGRTQQNKV 424

Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           VV +  NH IGD + VRIT+   +TL GE V
Sbjct: 425 VVFDRGNHRIGDFVHVRITEASSATLKGEEV 455


>gi|300858669|ref|YP_003783652.1| (dimethylallyl)adenosine tRNA methylthiotransferase
           [Corynebacterium pseudotuberculosis FRC41]
 gi|300686123|gb|ADK29045.1| (dimethylallyl)adenosine tRNA methylthiotransferase
           [Corynebacterium pseudotuberculosis FRC41]
 gi|302206376|gb|ADL10718.1| (Dimethylallyl)adenosine tRNA methylthiotransferase
           [Corynebacterium pseudotuberculosis C231]
 gi|302330932|gb|ADL21126.1| (Dimethylallyl)adenosine tRNA methylthiotransferase
           [Corynebacterium pseudotuberculosis 1002]
 gi|308276619|gb|ADO26518.1| (Dimethylallyl)adenosine tRNA methylthiotransferase
           [Corynebacterium pseudotuberculosis I19]
          Length = 512

 Score =  293 bits (749), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 157/448 (35%), Positives = 261/448 (58%), Gaps = 25/448 (5%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           + V+++GCQMNV+DS R+  +    GY  V + DD DL+V NTC +RE A  ++Y  LG+
Sbjct: 17  YEVRTFGCQMNVHDSERLSGLLEDAGYSPVAAGDDPDLVVFNTCAVRENADMRLYGTLGQ 76

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           +R  K  R      + + V GC+AQ + + +++++P V+VV G      LP LL+RA   
Sbjct: 77  LRATKIERP----GMQIAVGGCLAQKDKDAVVKKAPWVDVVFGTHNIGSLPALLDRAEHN 132

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
            R       + D  E+   V     R+     ++++  GC+  CTFC+VP  RG E+ R 
Sbjct: 133 NRA---QVEIVDSLEQFPSVLPA-KRESAYAGWVSVSVGCNNTCTFCIVPSLRGKEVDRR 188

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAW----RGKGLDGEKCTFSDLLYSLSEIKGLVR 262
              ++ E   L++ GV E+TLLGQNVNA+        ++ ++  FS LL +  +I+GL R
Sbjct: 189 PGDILAEVHALVEQGVSEVTLLGQNVNAYGVNFADSSIERDRSAFSKLLRACGDIEGLDR 248

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LR+T+ HP + +  +I A  +   + P LH+P+QSGSD++LK M R + + ++  I+D +
Sbjct: 249 LRFTSPHPAEFTSDVIDAMAETPNICPQLHMPLQSGSDKVLKEMRRSYRSKKFLAILDEV 308

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R   P  +I++D IVGFPGET++DF+AT+++V+K  +  A++F+YSPR GTP +    Q+
Sbjct: 309 REKIPHASITTDIIVGFPGETEEDFQATLEVVEKARFTSAYTFQYSPRPGTPAAEYENQI 368

Query: 383 DENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK----GKLVGRSPWL 435
            + V   + ERLL LQ+++  ++   N   +G  +E+L++  G  K     +L GR+   
Sbjct: 369 PKEVVQERYERLLELQERVSLEE---NQKLIGTEVELLVQTEGGRKNNKTNRLTGRARDG 425

Query: 436 QSVVLNSKNHNIGDIIKVRITDVKISTL 463
           + V  + +    G+I   R  D+ ++T+
Sbjct: 426 RLVHFSPEGSTDGEI---RPGDIIVTTV 450


>gi|224542096|ref|ZP_03682635.1| hypothetical protein CATMIT_01271 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525029|gb|EEF94134.1| hypothetical protein CATMIT_01271 [Catenibacterium mitsuokai DSM
           15897]
          Length = 483

 Score =  293 bits (749), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 166/448 (37%), Positives = 263/448 (58%), Gaps = 16/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           Q +++++YGCQ N  D+  +  +    GY   + +  AD+++LNTC IRE A EKV+  +
Sbjct: 44  QTYYIQTYGCQANERDTETLSGILEMMGYTHTDEVKQADVVLLNTCAIRENAEEKVFGKI 103

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G ++N+K +R     +L+  V GC+AQ E    +IL + P V+++ G    +RLP LL++
Sbjct: 104 GYLKNIKKTR----PNLIFGVCGCMAQEEVVVNKILEKFPQVDLIFGTHNIHRLPVLLKQ 159

Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           A   K +V   +S E D  E L       +R     A++ I  GC+KFCT+C+VPYTRG 
Sbjct: 160 AMLEKELVLEVWSKEGDVIENLP-----SHRANNYKAWVNIMYGCNKFCTYCIVPYTRGK 214

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR L +++ E  +L ++G  EITLLGQNVN++ GK L+     F+ LL ++++  G+ 
Sbjct: 215 ERSRELEEIIKEVEELKNSGYKEITLLGQNVNSY-GKDLNN-GTDFATLLEAVAKT-GID 271

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHP D +  +I      D +MP +HLPVQSG+D +L+ M RR++   Y ++ D 
Sbjct: 272 RIRFTTSHPWDFNADMIDIIAKYDNIMPSIHLPVQSGNDDVLQLMGRRYSKESYLKLFDM 331

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I+   PD  +++D IVGFP ET++ F+ T+ L +   Y  A++F YSPR GTP + M + 
Sbjct: 332 IKEKIPDCTVTTDIIVGFPNETEEQFQDTLSLYNYCKYDLAYTFIYSPREGTPAAKMEDN 391

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440
           V  + K +RL  L + + +     N   +GQ+++VL+E   K+    L G +   + +  
Sbjct: 392 VPLSDKEQRLYRLNELVNKYANEANQKYLGQVVKVLVEGPSKKNPDVLSGYTEHNKLINF 451

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 +G I+ VR+T+ K   L GE V
Sbjct: 452 KGDASMVGQIVDVRVTEAKTWALTGEQV 479


>gi|311113252|ref|YP_003984474.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Rothia dentocariosa ATCC
           17931]
 gi|310944746|gb|ADP41040.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Rothia dentocariosa ATCC
           17931]
          Length = 505

 Score =  292 bits (748), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 159/450 (35%), Positives = 268/450 (59%), Gaps = 30/450 (6%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
            P+ + V+++GCQMNV+DS RM  +  + GY R    ++ DL+V NTC +RE A+ ++Y 
Sbjct: 16  TPRTYEVRTFGCQMNVHDSERMSGLLEANGYVRAAEGEEPDLVVFNTCAVRENASNRLYG 75

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            LG++ ++K  R  EG  + + V GC+AQ +   I+ ++P V+VV G      LP LLER
Sbjct: 76  HLGQLASVK--RRHEG--MQIAVGGCLAQKDQNTIIEKAPWVDVVFGTHNIGSLPTLLER 131

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRG--VTAFLTIQEGCDKFCTFCVVPYTRG 200
           AR          +  +  E L +       KR    + +++I  GC+  CTFC+VP  RG
Sbjct: 132 ARHNHE------AQAELLESLEVFPSTLPTKRDHVYSGWVSISVGCNNTCTFCIVPSLRG 185

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKG 259
            E  R    ++ E + L+D+G  E+TLLGQNVN++   G++ G++  FS LL +  +IKG
Sbjct: 186 KEKDRRPGDILAEVQALVDDGAIEVTLLGQNVNSY---GVEFGDRQAFSKLLRACGDIKG 242

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           L R+R+T+ HP   +D +I+A  +   +MP LH+P+QSGSD++LK M R + + ++  I+
Sbjct: 243 LERVRFTSPHPAMFTDDVIEAMAETPNVMPVLHMPLQSGSDKVLKDMRRSYRSKKFLGIL 302

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
           +++R   P   I++D IVGFPGE+++DF+ T+ +V++  ++ AF+F+YS R GTP + M 
Sbjct: 303 EKVRERIPHAVITTDIIVGFPGESEEDFQDTLRVVEQARFSSAFTFQYSIRPGTPAATME 362

Query: 380 EQVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLI----EKHGKEKGKLVGRS 432
            Q+ ++V   + ERL+ LQ ++  ++   N   +G+ +E+++     +  ++  +L GR 
Sbjct: 363 NQIPKDVVQERYERLVALQDRIAGEE---NHKQLGKTVELMVVAESGRKAQQTHRLAGRG 419

Query: 433 PWLQ----SVVLNSKNHNIGDIIKVRITDV 458
           P  +    SV    +    GD++ V IT+ 
Sbjct: 420 PDQRLVHFSVPAGCEEPRPGDMVTVPITEA 449


>gi|152965467|ref|YP_001361251.1| RNA modification enzyme, MiaB family [Kineococcus radiotolerans
           SRS30216]
 gi|229890611|sp|A6W848|MIAB_KINRD RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|151359984|gb|ABS02987.1| RNA modification enzyme, MiaB family [Kineococcus radiotolerans
           SRS30216]
          Length = 510

 Score =  292 bits (748), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 167/433 (38%), Positives = 249/433 (57%), Gaps = 33/433 (7%)

Query: 19  DQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD---------DADLIVLNT 69
           D     + + V+++GCQMNV+DS R+  +    GY R +            + D++V NT
Sbjct: 13  DTVAAARTYQVRTFGCQMNVHDSERLSGLLEDAGYVRFDEAGRPEGSDAPVEPDVVVFNT 72

Query: 70  CHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG 129
           C +RE A  K+Y  LG +  +K  R      + + V GC+AQ +  EI+R++P V+VV G
Sbjct: 73  CAVRENADNKLYGNLGHLAPVKERRPG----MQIAVGGCLAQKDRGEIVRKAPWVDVVFG 128

Query: 130 PQTYYRLPELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
                 LP LLERAR      V+   S+E     L        R+    A+++I  GC+ 
Sbjct: 129 THNVGSLPVLLERARHNAEAQVEILESLETFPSTLPT-----RRESPYAAWVSISVGCNN 183

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTF 247
            CTFC+VP  RG E  R    V+ E   L+  GV E+TLLGQNVN +   G++ G+K  F
Sbjct: 184 TCTFCIVPALRGKEKDRRPGDVLAEIEALVGEGVLEVTLLGQNVNTY---GVEFGDKLAF 240

Query: 248 SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307
             LL +   I+GL R+R+T+ HP   +D ++ A  +   +MP LH+P+QSGSDR+LK+M 
Sbjct: 241 GKLLRATGGIEGLERVRFTSPHPSSFTDDVVDAMAETPNVMPSLHMPLQSGSDRVLKAMR 300

Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           R +    +  IIDR+RS  PD AI++D IVGFPGETD+DF  T+ +V++  ++ AF+F+Y
Sbjct: 301 RSYRQSRFLGIIDRVRSSIPDAAITTDIIVGFPGETDEDFEQTLHVVEQARFSSAFTFQY 360

Query: 368 SPRLGTPGSNMLEQVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGK 423
           SPR GTP + M +Q+ + V   + ERL  LQ ++  +    N A  G+ +EVL+ E  G+
Sbjct: 361 SPRPGTPAATMGDQIPKRVVQERYERLTALQDRITYED---NQAQTGRTLEVLVAEGEGR 417

Query: 424 EKG---KLVGRSP 433
           +     +L GR+P
Sbjct: 418 KDAATRRLSGRAP 430


>gi|171909784|ref|ZP_02925254.1| hypothetical protein VspiD_01390 [Verrucomicrobium spinosum DSM
           4136]
          Length = 455

 Score =  292 bits (748), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 168/457 (36%), Positives = 268/457 (58%), Gaps = 19/457 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + ++K+YGCQMN  DS ++  MF  +GY       +AD++++NTC +R++A +K    +G
Sbjct: 3   KVYIKTYGCQMNERDSEQVSQMFIERGYTMTREEPEADVVLINTCSVRDQAEQKAIGKMG 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE---R 142
            +R +   R      ++    GC+AQ+   E+L+ +  V++VVG Q Y+R+ E +E   R
Sbjct: 63  MLRKIHRQRTH----VVTGFMGCMAQSRAGELLKTAK-VDLVVGTQKYHRVVEYVEEIVR 117

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYN---RKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           A+  +++ D  +S+ D  E  S  +   +   +++  +AF++I +GC+  CTFC+VPYTR
Sbjct: 118 AKEARQMDDEKFSIVDVEEESSSQNAIRDHILKEKQASAFVSIMQGCNMKCTFCIVPYTR 177

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL---DGEKCTFSDLLYSLSE 256
           G E  R ++++V+E R+L D G+ E+TLLGQ VN +        DG K  F  LL  + E
Sbjct: 178 GGERGRPIAEIVEEVRRLADQGIKEVTLLGQIVNLYGRHEFPMKDG-KSPFVQLLEGVHE 236

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           + G+ R+R+T+ HP      LI A   L  L  ++HLP+QSGSD ILK M+R ++A ++ 
Sbjct: 237 VPGIERIRFTSPHPIGYKSDLINAFTYLPKLAEHVHLPLQSGSDAILKKMHRPYSAAKFE 296

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
            ++ RIR+ RP IA+S+D IVGFPGET++ ++ T  L D++ +  AF F+YS R GTP +
Sbjct: 297 DLVARIRAARPGIAVSTDIIVGFPGETEEHYQETRALCDRVQFENAFIFRYSKRRGTPAA 356

Query: 377 NMLE--QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSP 433
            M +  Q+ E VK ER   L   + +   +     +G  +E+L E   K +  +LVGR+ 
Sbjct: 357 EMDDALQLSERVKEERNQDLLALVNQHAQAKYVPLIGTKVEILCEGPSKTDASRLVGRTR 416

Query: 434 WLQSVVLNSKNHNI-GDIIKVRITDVKISTLYGELVV 469
             + VV       + G I  V +TD    TLYGE V+
Sbjct: 417 TNKIVVFEGPAERLTGQIFDVHVTDFANFTLYGEAVL 453


>gi|254881037|ref|ZP_05253747.1| SAM/TRAM family methylase [Bacteroides sp. 4_3_47FAA]
 gi|319640044|ref|ZP_07994771.1| hypothetical protein HMPREF9011_00368 [Bacteroides sp. 3_1_40A]
 gi|254833830|gb|EET14139.1| SAM/TRAM family methylase [Bacteroides sp. 4_3_47FAA]
 gi|317388322|gb|EFV69174.1| hypothetical protein HMPREF9011_00368 [Bacteroides sp. 3_1_40A]
          Length = 456

 Score =  292 bits (748), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 167/451 (37%), Positives = 269/451 (59%), Gaps = 20/451 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F+++YGCQMNV DS  +  +    GY    ++D+AD + +NTC IR+ A +K+ + L
Sbjct: 18  KKLFIETYGCQMNVADSEVVASIMQMAGYHVCETLDEADAVFMNTCSIRDNAEQKILNRL 77

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
               ++K ++ +   +L+V V GC+A+   ++++     V++VVGP  Y  LP+L+    
Sbjct: 78  EFFHSMKKNKRR---NLIVGVLGCMAERVKDDLIENHH-VDLVVGPDAYLTLPDLVASVE 133

Query: 145 FGKRVVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            G++ ++ + S  + +  +  S + G +     ++ F++I  GC+ FC +C+VPYTRG E
Sbjct: 134 AGEKAINVELSTTETYREVIPSRICGNH-----ISGFVSIMRGCNNFCHYCIVPYTRGRE 188

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR +  +++E R L D G  E+TLLGQNVN++R +  +GE  TF  LL +++E    +R
Sbjct: 189 RSRDVESILNEVRDLADKGYKEVTLLGQNVNSYRFEK-EGEIITFPMLLRTVAEAVPDMR 247

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP+DMSD  ++   +   +  ++HLPVQSGS RILK MNR++T   Y + +  I
Sbjct: 248 VRFTTSHPKDMSDETLQVIAETPNVCKHIHLPVQSGSSRILKLMNRKYTREWYLERVAAI 307

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML-EQ 381
           R + PD  +S+D   G+  ET++D + ++ L+ +  Y  AF FKYS R GT  S  L + 
Sbjct: 308 RRIIPDCGLSTDIFSGYHSETEEDHQESLSLMRECAYDSAFMFKYSERPGTYASKHLPDD 367

Query: 382 VDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQS 437
           V E VK  RL   + LQ +L  +    N   VG+  EV++E   K  + +L GR+   + 
Sbjct: 368 VPEEVKIRRLNEIIELQNRLSAES---NARDVGKTFEVMVEGVSKRSREQLFGRTQQNKV 424

Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           VV +  NH IGD + VRIT+   +TL GE V
Sbjct: 425 VVFDRGNHRIGDFVHVRITEASSATLKGEEV 455


>gi|226226860|ref|YP_002760966.1| hypothetical protein GAU_1454 [Gemmatimonas aurantiaca T-27]
 gi|226090051|dbj|BAH38496.1| hypothetical protein [Gemmatimonas aurantiaca T-27]
          Length = 451

 Score =  292 bits (748), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 167/430 (38%), Positives = 256/430 (59%), Gaps = 18/430 (4%)

Query: 28  FVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRI 87
           ++++YGCQMNV DS  M     + GYE V++ D AD+I++NTC IRE A  +V   LG +
Sbjct: 8   YIETYGCQMNVADSELMYGKLVAHGYEPVDAPDGADVILVNTCAIRENAETRVIGRLGEL 67

Query: 88  RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147
           R           D +V V GC+AQ  G  +L ++  V++VVGP  Y  LP LL+ AR G+
Sbjct: 68  RRYMKP------DTIVGVTGCMAQRLGPRVLEQARHVSLVVGPDGYRALPALLDGARRGE 121

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
           +   TD+ +E+ +E     D    R  GV A++ +Q GCD  CT+C+VP+TRG E SR L
Sbjct: 122 KFTATDFDLEEHYE-----DVVARRFEGVKAWIPVQRGCDYRCTYCIVPFTRGPERSRKL 176

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
             VV E +++++ G+ E+ LLGQ VN++     DG    F+DLL ++  + G+ R+RYT+
Sbjct: 177 DDVVREVQQVVEQGLSEVVLLGQTVNSY----TDGTH-DFADLLRAVGAVDGIRRVRYTS 231

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
            HP D SD +I A   +  +  ++HLP+QSGS  +LK M RR++  EY   + R+R+  P
Sbjct: 232 PHPNDFSDRVIDAMASVATVCEHIHLPMQSGSTSMLKRMLRRYSREEYLDCVARMRAAIP 291

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ--VDEN 385
            +++++D IVGFPGETD +F  T+ L  ++ +  AF FK+SPR GTP + M     + ++
Sbjct: 292 GLSLTTDIIVGFPGETDAEFEDTLSLCQEVRFDDAFMFKFSPREGTPATRMPADWTIPDD 351

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445
           V A R   L K +R      N   +G  +EVLIEK  ++      RS   ++V++ +   
Sbjct: 352 VMAARFDRLVKTVRGISRENNLKRLGDTVEVLIEKLARDGELWQARSRDFKTVMVPADAG 411

Query: 446 NIGDIIKVRI 455
            IGD ++V++
Sbjct: 412 KIGDYLRVQL 421


>gi|229891226|sp|Q0IC70|MIAB_SYNS3 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
          Length = 473

 Score =  292 bits (748), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 179/456 (39%), Positives = 270/456 (59%), Gaps = 25/456 (5%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           +++ ++GCQMN  DS RM  +  + GY+  N+  DADL++ NTC IR+ A +KVYS+LGR
Sbjct: 29  YWITTFGCQMNKADSERMAGILETMGYQEANAELDADLVLYNTCTIRDNAEQKVYSYLGR 88

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
               +  R +   +L +VVAGCVAQ EGE +LRR P +++V+GPQ   RL  LL + + G
Sbjct: 89  ----QAIRKRTNPNLTLVVAGCVAQQEGESLLRRVPELDLVMGPQHANRLETLLTQVQAG 144

Query: 147 KRVVDT-DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           ++VV T D+ +    E L+       R     A++ +  GC++ CT+CVVP  RG E SR
Sbjct: 145 QQVVATEDHHI---LEDLTTA----RRDSSTCAWVNVIYGCNERCTYCVVPSVRGKEQSR 197

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG------EKCTFSDLLYSLSEIKG 259
               ++ E   L   G  EITLLGQN++A+ G+ L G       + T +DLL+ + +++G
Sbjct: 198 LPESILLEMEGLAARGFKEITLLGQNIDAY-GRDLPGITAEGRRQHTLTDLLHQVHDVEG 256

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           + RLR+ TSHPR  ++ LI A  DL  +  + H+P QSG + +LK+M R +T   YR+II
Sbjct: 257 IERLRFATSHPRYFTERLIDACADLPKVCEHFHIPFQSGDNELLKAMARGYTVERYRRII 316

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
           DRIR   PD AIS+D IV FPGETD  +R T+ L+++IG+ Q  +  YSPR  TP ++  
Sbjct: 317 DRIRKRMPDAAISADVIVAFPGETDAQYRRTLALIEEIGFDQVNTAAYSPRPNTPAADWN 376

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSPWLQSV 438
            Q+ E VK  RL  +   +       N    G+I +VL E  + K+  +L+GR+   +  
Sbjct: 377 NQLSEEVKVARLQEINALVESTAKERNARYAGRIEQVLAEGMNPKDPSQLMGRTRTNRLT 436

Query: 439 VLNSKN-----HNIGDIIKVRITDVKISTLYGELVV 469
             ++++     H  GD++ VRI  V+  +L G  V+
Sbjct: 437 FFSAESPQGITHRAGDLVDVRIDQVRSFSLTGTPVI 472


>gi|332292317|ref|YP_004430926.1| RNA modification enzyme, MiaB family [Krokinobacter diaphorus
           4H-3-7-5]
 gi|332170403|gb|AEE19658.1| RNA modification enzyme, MiaB family [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 483

 Score =  292 bits (748), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 173/461 (37%), Positives = 268/461 (58%), Gaps = 29/461 (6%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F++SYGCQMN  DS  +  +  ++GY     +++ADL+++NTC IREKA   V   L
Sbjct: 24  KKLFIESYGCQMNFADSEVVASILANEGYNTTQILEEADLVLVNTCSIREKAEVTVRKRL 83

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            + + +K    K+  ++ V V GC+A+    + L    IV++VVGP  Y  +P LL    
Sbjct: 84  EKYQAVKR---KQNPNMKVGVLGCMAERLKSKFLEEEKIVDLVVGPDAYKDIPNLLSEVE 140

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G+  V+   S E+ +  +S V    N   GVTAF++I  GCD  CTFCVVP+TRG E S
Sbjct: 141 EGRNAVNVILSKEETYGDISPVRLLTN---GVTAFVSITRGCDNMCTFCVVPFTRGRERS 197

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNA--WRGKGL--DGEKCT---------FSDLL 251
           R    +++E + L + G  EITLLGQNV++  W G GL  D +K +         F+ L+
Sbjct: 198 RDPQSILEEVQDLAEKGFKEITLLGQNVDSYLWYGGGLKKDFDKASEMAKATAVNFAQLM 257

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
            ++++ +  +R+R++TS+P+DM+  +I+       +  Y+HLPVQSGSDRIL+ MNR+HT
Sbjct: 258 DTVAKAQPKMRIRFSTSNPQDMTLDVIEVMAKHKNVCNYIHLPVQSGSDRILQLMNRQHT 317

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
             EY+ +ID I+++ P I IS D I GFP ET++D + T+DL++ + Y   F F YS R 
Sbjct: 318 VAEYKTLIDNIKNLIPHIGISQDMITGFPTETEEDHQGTLDLINYVKYDFGFMFYYSERP 377

Query: 372 GTPGSNMLE-QVDENVKAERL---LCLQKKL-REQQVSFNDACVGQIIEVLIEKHGKE-K 425
           GT     +E  +   +K  RL   + LQ+ + R+  + + D    Q +E+LIEK  K+ K
Sbjct: 378 GTMAERKMEDDIPLAIKKRRLQDVIDLQRAISRDNLLRYQD----QTVEILIEKESKKNK 433

Query: 426 GKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGE 466
            +  GR+      V    ++ +GD + V+I +    TL GE
Sbjct: 434 DEWSGRNDQNVVAVFPKGDYKVGDFVNVKINECTTGTLIGE 474


>gi|324997385|ref|ZP_08118497.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Pseudonocardia
           sp. P1]
          Length = 492

 Score =  292 bits (748), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 168/441 (38%), Positives = 255/441 (57%), Gaps = 27/441 (6%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           + V++YGCQMNV+D+ RM  +    GY R    D AD++V NTC +RE A  K+Y  LG 
Sbjct: 5   YTVRTYGCQMNVHDTERMAGLLEQAGYARAEDPDAADVVVFNTCAVRENADNKLYGNLGH 64

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           +R  K +      D+ + V GC+AQ + + I R++P V+VV G    + LP LLERAR  
Sbjct: 65  LRPRKQANP----DMQIAVGGCLAQKDRDTITRKAPWVDVVFGTHNVHALPTLLERARHN 120

Query: 147 KRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           +   V+   S+E     L        R+     +++I  GC+  CTFC+VP  RG E  R
Sbjct: 121 ETAEVEIAESLEVFPSTLPA-----RRESAYAGWVSISVGCNNTCTFCIVPALRGKERDR 175

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLR 264
               V+ E   L   GV E+TLLGQNVNA+   G D G++  FS LL +   ++GL R+R
Sbjct: 176 RPGDVLAEVEALAAEGVLEVTLLGQNVNAY---GQDMGDREAFSKLLRACGGVEGLERVR 232

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +T+ HPRD +  +I A  +   + P LH+P+QSGSD +L+ M R + +  + +I+  +R 
Sbjct: 233 FTSPHPRDFTSDVIAAMAETPNVCPQLHMPLQSGSDAVLRRMRRSYRSDRFLRILSDVRE 292

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             P  AIS+D IVGFPGET++DF+AT+D+V    ++QAF+F+YSPR GTP ++M  Q+ +
Sbjct: 293 SIPHAAISTDIIVGFPGETEEDFQATLDVVAAARFSQAFTFQYSPRPGTPAADMDGQLPK 352

Query: 385 NV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG----KLVGRS---PW 434
            V   + ERL+ LQ+++  ++   N A  G+ +E+L+      K     +L GR+     
Sbjct: 353 KVVQERYERLVALQEEISWEE---NRAQEGREVELLVSTGEGRKDDATRRLTGRARDGRL 409

Query: 435 LQSVVLNSKNHNIGDIIKVRI 455
           +     ++     GD++ VRI
Sbjct: 410 VHFAPGDATGIRPGDLVTVRI 430


>gi|260683603|ref|YP_003214888.1| putative radical sam protein [Clostridium difficile CD196]
 gi|260687263|ref|YP_003218397.1| putative radical sam protein [Clostridium difficile R20291]
 gi|260209766|emb|CBA63567.1| putative radical sam protein [Clostridium difficile CD196]
 gi|260213280|emb|CBE04822.1| putative radical sam protein [Clostridium difficile R20291]
          Length = 429

 Score =  292 bits (748), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 167/439 (38%), Positives = 268/439 (61%), Gaps = 18/439 (4%)

Query: 36  MNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRI 95
           MN +DS ++  M    GY+    ++++DLI+ NTC +RE A  KVY  LG++++LK    
Sbjct: 1   MNEHDSEKLCSMLEEMGYQMSMMVEESDLIIYNTCAVRENAELKVYGNLGQLKHLKG--- 57

Query: 96  KEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELL-ERARFGKRVVDT 152
            +  D+ + V GC+ Q     EE+ ++   V+++ G    Y+ P+LL E     K +VD 
Sbjct: 58  -KNPDMKIAVCGCMMQQPHVVEELRKKYKHVDLIFGTHNLYKFPQLLTESINSDKMLVDV 116

Query: 153 DYSVEDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVV 211
            + V+ +     +++G   NRK  + AF+ I  GC+ FCT+C+VPYTRG E SR+   ++
Sbjct: 117 -WDVDGE-----VIEGLRSNRKFELKAFVNIMYGCNNFCTYCIVPYTRGRERSRTPEDII 170

Query: 212 DEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPR 271
           +E ++L+ NG  EITLLGQNV+++ GK L+    +FS+LL  +++I+G+ R+R+ TSHP+
Sbjct: 171 NEIKELVANGTKEITLLGQNVDSY-GKTLEN-PVSFSELLRKVNDIEGIERVRFMTSHPK 228

Query: 272 DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAI 331
           D+SD +I A  D D +  +LHLP+Q GS  +LK MNR +T   Y +II++ +   P IA 
Sbjct: 229 DISDEVIYAIRDCDKVCEFLHLPIQCGSSSLLKKMNRHYTKEYYLEIIEKAKKEVPGIAF 288

Query: 332 SSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERL 391
           S+D ++GFPGET++D   T+D+V+K+ Y  AF+F YS R GTP + M  Q+ E++K +R 
Sbjct: 289 STDLMIGFPGETEEDLLDTLDVVEKVRYDSAFTFIYSKRQGTPAAKMENQIPEDIKHDRF 348

Query: 392 LCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVLNSKNHN-IGD 449
             + + +       ND    +I+EVL+E   K  + K  GR+   + V     N + IG 
Sbjct: 349 NRVLEAVNRISAEINDGYKDRIVEVLVEGRSKNNENKFAGRTRQNKLVNFEGGNDDLIGK 408

Query: 450 IIKVRITDVKISTLYGELV 468
           ++ V+IT+ +  +L G LV
Sbjct: 409 LVMVKITEPRTFSLNGILV 427


>gi|88855436|ref|ZP_01130100.1| hypothetical protein A20C1_01396 [marine actinobacterium PHSC20C1]
 gi|88815343|gb|EAR25201.1| hypothetical protein A20C1_01396 [marine actinobacterium PHSC20C1]
          Length = 514

 Score =  292 bits (747), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 168/460 (36%), Positives = 270/460 (58%), Gaps = 31/460 (6%)

Query: 13  MVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHI 72
           M   I ++   P+ + V++YGCQMNV+DS R+     + GY R  +   AD++V+NTC +
Sbjct: 1   MEDMIDEKLATPRSYEVRTYGCQMNVHDSERLSGSLEAAGYIRA-TKGQADVVVINTCAV 59

Query: 73  REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT 132
           RE A  K+Y  LG + ++K  R  EG  + + V GC+AQ +   IL ++P V+VV G   
Sbjct: 60  RENADNKLYGNLGMLASVK--REHEG--MQIAVGGCLAQKDKNVILEKAPWVDVVFGTHN 115

Query: 133 YYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT--AFLTIQEGCDKFC 190
              LP LLERAR  +       +  +  E L +       +R  T  A+++I  GC+  C
Sbjct: 116 MGSLPTLLERARHNEE------AQLEILESLDVFPSTLPTRRESTHSAWVSISVGCNNTC 169

Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSD 249
           TFC+VP  RG E  R    ++ E + ++D+G  EITLLGQNVN++   G++ G++  FS 
Sbjct: 170 TFCIVPALRGKEKDRRAGDILSEVQAIVDDGAIEITLLGQNVNSY---GVEFGDRQAFSK 226

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
           LL +   I GL R+R+T+ HP   +D +I A  +   +MP LH+P+QSGSDRILK+M R 
Sbjct: 227 LLRATGAIDGLERVRFTSPHPAAFTDDVIDAMAETPNVMPQLHMPLQSGSDRILKAMRRS 286

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369
           + + ++  I++R+R+  P  AIS+D IVGFPGET++DF  T+ +V++  +A A++F+YS 
Sbjct: 287 YRSTKFLGILERVRAQMPHAAISTDIIVGFPGETEEDFAETLRVVEEARFASAYTFQYSI 346

Query: 370 RLGTPGSNMLEQVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIE----KHG 422
           R GTP + M +Q+ + +   + ERL  LQ ++  ++   N+  VG+ ++V++     +  
Sbjct: 347 REGTPAATMEDQIPKEIVQERYERLAALQDRISREE---NEKQVGRTVQVMVTATEGRKQ 403

Query: 423 KEKGKLVGRSPWLQSVVLN----SKNHNIGDIIKVRITDV 458
            E  +L GR+   + V  N    S     GD++ + I++ 
Sbjct: 404 AETDRLSGRAEDSRLVHFNVPEASPVPRPGDVVTLTISEA 443


>gi|83815966|ref|YP_446673.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Salinibacter ruber DSM
           13855]
 gi|83757360|gb|ABC45473.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Salinibacter ruber DSM
           13855]
          Length = 572

 Score =  292 bits (747), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 163/447 (36%), Positives = 262/447 (58%), Gaps = 9/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ ++++YGCQMNV DS  +  +    GY        AD+++LNTC IRE A  K+ + L
Sbjct: 111 KQVYIETYGCQMNVNDSGIVASVLEESGYGLTRDQAAADVVLLNTCAIRENAERKIRARL 170

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-ERA 143
             +R+ K  R    G+L++ V GC+A+   E++L +  +V+VVVGP  Y  LP+LL E  
Sbjct: 171 SMLRSEKEKR---DGELMLGVLGCMAERLREKLLEQEDLVDVVVGPDAYRDLPQLLYEAD 227

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             G+  V+ + S ++ +E +  V    N   GV+A+++I  GCD  CTFCVVP+TRG E 
Sbjct: 228 ATGQAAVNVELSKQETYEDIQPVRYDSN---GVSAYVSIMRGCDNMCTFCVVPFTRGREE 284

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR ++ ++ E  +L + G  E+TLLGQNVN++     DG   +F++L+  +S +   +R+
Sbjct: 285 SRPVTTILSEVARLAEEGYKEVTLLGQNVNSYHYTDADGTSVSFAELVDRVSRVSPEMRV 344

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           RY+TSHP+D +D L+K H D   +  Y+HLPVQ G+  +L  M R +T  EY  + +R +
Sbjct: 345 RYSTSHPKDCTDDLLKVHRDRPNVCNYIHLPVQHGNTEVLDRMRRTYTREEYLALTERAK 404

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE-QV 382
            + P +++S+D I GF GET+     T+ L++++ Y  A+ FKYS R  T  +   E  V
Sbjct: 405 ELCPGVSLSTDLIAGFCGETEAQHEDTLSLMEEVRYDHAYMFKYSERPQTYAARKYEDDV 464

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441
            E+ K  RL  + +   +     N+A VG++  VL+E   K+   +  GR+   + VV +
Sbjct: 465 PEDTKQRRLEEIIELQNQHAKESNEAEVGRVHTVLVEGPSKKSDAQFFGRTDTNKGVVFD 524

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
            +++  GD ++VRI D   STL G  +
Sbjct: 525 REDYEKGDYVRVRIEDCTSSTLLGTAI 551


>gi|28493577|ref|NP_787738.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Tropheryma
           whipplei str. Twist]
 gi|81437721|sp|Q83FT9|MIAB_TROWT RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|28476619|gb|AAO44707.1| unknown [Tropheryma whipplei str. Twist]
          Length = 470

 Score =  292 bits (747), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 161/416 (38%), Positives = 254/416 (61%), Gaps = 25/416 (6%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           + V++YGCQMNV+DS R+  +   +GY +  S DDAD++VLNTC +RE A  + Y  LG+
Sbjct: 3   YTVRTYGCQMNVHDSERIAGVLEDEGYVKSGS-DDADVVVLNTCAVRENADNRFYGNLGQ 61

Query: 87  IRNLKNS-RIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           +   KN+ RI++     + V GC+AQ +  +I  ++P V+VV G      LP LL R+R 
Sbjct: 62  LLQKKNNGRIRQ-----IAVGGCLAQKDRHKIFEKAPWVDVVFGTHNLGSLPALLRRSRH 116

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            K     +  ++D  E          R+   +A+++I  GC+  CTFC+VP  RG E  R
Sbjct: 117 NK---TAEIEIKDFLETFP-SSLPVRRESNYSAWVSISVGCNNTCTFCIVPSLRGKERDR 172

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLR 264
               ++ E   L+  GV E+TLLGQNVN +   G++ G++  F+ LL     I+GL RL+
Sbjct: 173 RPGDILAEISALVSEGVLEVTLLGQNVNTY---GVEFGDRSAFASLLRKAGAIEGLERLK 229

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +T+ HP   +  +I A  D   ++P LH+P+QSGSDRIL++M R + A ++ +II   R+
Sbjct: 230 FTSPHPAAFTSDVIDAMHDTQAVLPQLHMPLQSGSDRILRAMRRSYRAGKFLKIISEARN 289

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             P+IAI++D IVGFPGET++DF+ T++LV ++ +A AF+F+YSPR GTP ++M  Q+  
Sbjct: 290 KIPNIAITTDIIVGFPGETEEDFQDTLNLVAEVRFASAFTFQYSPRPGTPAASMPNQIPG 349

Query: 385 NV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL----VGRSP 433
           ++   + ERLL LQ ++  ++   N   +G+ +E+L+   G++   L     GR+P
Sbjct: 350 DIVQERYERLLDLQNRIALEE---NRKLIGKEVELLVTVGGRKDSMLDNRYTGRTP 402


>gi|226306246|ref|YP_002766206.1| tRNA-thiotransferase [Rhodococcus erythropolis PR4]
 gi|226185363|dbj|BAH33467.1| putative tRNA-thiotransferase [Rhodococcus erythropolis PR4]
          Length = 515

 Score =  292 bits (747), Expect = 9e-77,   Method: Compositional matrix adjust.
 Identities = 150/409 (36%), Positives = 238/409 (58%), Gaps = 13/409 (3%)

Query: 15  SQIVDQCIVPQRFF-VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIR 73
           + + +    P R + V++YGCQMNV+DS R+  +    GY +  +  D DL+V NTC +R
Sbjct: 9   TAVPEATATPVRTYEVRTYGCQMNVHDSERLSGLLEDAGYSKAETGTDPDLVVFNTCAVR 68

Query: 74  EKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTY 133
           E A  K+Y  L ++   K +      D+ + V GC+AQ + + +++++P V+VV G    
Sbjct: 69  ENADNKLYGNLSQLAPNKEANP----DMQIAVGGCLAQKDRDTVVKKAPFVDVVFGTHNI 124

Query: 134 YRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC 193
             LP LL+RAR  +R    +  + D  E          R+     +++I  GC+  CTFC
Sbjct: 125 GSLPALLDRARHNQRA---EVEILDALEAFPSTLPA-KRESAYAGWVSISVGCNNTCTFC 180

Query: 194 VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE----KCTFSD 249
           +VP  RG E+ R    ++ E + L+D GV E+TLLGQNVNA+     D E    +  F+ 
Sbjct: 181 IVPALRGKEVDRRPGDILAEVQALVDEGVSEVTLLGQNVNAYGVSFADPEQPRDRGAFAS 240

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
           LL +   I GL R+R+T+ HP + +D +I+A      + P LH+P+QSGSD++LK+M R 
Sbjct: 241 LLKACGHIDGLERVRFTSPHPAEFTDDVIEAMATTPNVCPQLHMPLQSGSDKVLKAMKRS 300

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369
           +   +Y  II+++R+  P  AI++D IVGFPGET++DF+ T+D+V K  ++ A++F+YS 
Sbjct: 301 YRKSKYLGIIEKVRAAMPHAAITTDIIVGFPGETEEDFQETLDVVRKARFSNAYTFQYSK 360

Query: 370 RLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI 418
           R GTP + M +Q+ + V  ER + L     E  +  N   VG  +E+L+
Sbjct: 361 RPGTPAAEMADQLPKEVVQERYMRLLAVQEEVNIEENRKLVGTEVELLV 409


>gi|312195023|ref|YP_004015084.1| RNA modification enzyme, MiaB family [Frankia sp. EuI1c]
 gi|311226359|gb|ADP79214.1| RNA modification enzyme, MiaB family [Frankia sp. EuI1c]
          Length = 550

 Score =  292 bits (747), Expect = 9e-77,   Method: Compositional matrix adjust.
 Identities = 165/410 (40%), Positives = 245/410 (59%), Gaps = 20/410 (4%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           + V+++GCQMNV+DS R+  +  S GY  V++ +  DL+V NTC +RE A  ++Y  LG 
Sbjct: 5   YQVRTFGCQMNVHDSERISGLLESAGYVPVDAGETPDLVVFNTCAVRENADNRLYGNLGH 64

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           +   K    ++   + + V GC+AQ +   I R++P V+VV G    +RLP LLERAR  
Sbjct: 65  LYPTK----RDNPGMQIAVGGCLAQKDRGTITRKAPWVDVVFGTHNLHRLPVLLERARH- 119

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRG--VTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
               + +  VE   E L +       +R    +A+++I  GCD  CTFC+VP  RG E  
Sbjct: 120 ----NAEAQVEIA-EALEVFPSTLPARRASHASAWVSISVGCDNTCTFCIVPSLRGKERD 174

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R    V+ E   L+ +G  E+TLLGQNVN++ G+   G+   F+ LL +   I+GL R+R
Sbjct: 175 RRPGDVLAEVEALVADGAVEVTLLGQNVNSY-GRSF-GDPGAFAKLLRACGRIEGLERVR 232

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +T+ HPRD +D +I A  +   + P LH+P+QSGSD +L+ M R +    Y  I++R+R+
Sbjct: 233 FTSPHPRDFTDDVIAAMAETPNVCPSLHMPMQSGSDEVLRRMRRSYRRDRYLGIVERVRA 292

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             PD AI++D IVGFPGET+ DF  T+D+V +  ++ AF+F+YSPR GTP + M EQV  
Sbjct: 293 ALPDAAITTDIIVGFPGETERDFLDTLDVVGQARFSGAFTFQYSPRPGTPAATMDEQVPP 352

Query: 385 NVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR 431
            V AE   RL+ LQ    E  ++ N A VG+ +EVL+ +    K +  GR
Sbjct: 353 AVVAERYGRLVALQD---EVSLAENRAQVGRTVEVLLAEGEGRKDESTGR 399


>gi|303232055|ref|ZP_07318758.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Veillonella atypica
           ACS-049-V-Sch6]
 gi|302513161|gb|EFL55200.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Veillonella atypica
           ACS-049-V-Sch6]
          Length = 438

 Score =  292 bits (747), Expect = 9e-77,   Method: Compositional matrix adjust.
 Identities = 161/447 (36%), Positives = 256/447 (57%), Gaps = 17/447 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + +++ +YGCQMN  DS R+     + GY   + ++ ADLI+LNTC +RE A  KV+  +
Sbjct: 2   KSYYIYTYGCQMNTADSERLSHQLETVGYIPTDDVELADLILLNTCAVRETAETKVFGRI 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-ERA 143
           G ++ LK    ++  +L++ + GC+AQ    E+ +R+P +++V+G      + E++ E  
Sbjct: 62  GELKRLK----QKNKNLIIAITGCMAQKNQAEMFKRAPHIDIVLGTHNIQHINEMIAEVQ 117

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           R  K  ++ D       E  +  +G +       A++ I  GC+KFCT+C+VP+ RG EI
Sbjct: 118 RTHKHQINVDMDNTVLPELQAKPNGTF------FAWVPIMNGCNKFCTYCIVPHVRGREI 171

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT-FSDLLYSLSEIKGLVR 262
           SR +  +V E  +L   G  EITLLGQNVN++   GLD +  T F  L+ +L  I G+ R
Sbjct: 172 SRPVEAIVKEVTELGAKGFKEITLLGQNVNSY---GLDFKDGTDFGTLVDALDHIPGIER 228

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +RY TSHP+DM+  +I A G    ++ +LHLP+QSGSDRILK MNR +T   Y++++   
Sbjct: 229 IRYMTSHPQDMTKSMIDALGRSSNIVTHLHLPIQSGSDRILKKMNRHYTVEHYKELLSYC 288

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R    ++ +++D IVGFPGET++DF  T+ L+  + Y  A++F YS R GTP + M EQV
Sbjct: 289 REKIKNVVVTTDIIVGFPGETEEDFEQTLQLLKDVRYDMAYTFIYSKRSGTPAATMDEQV 348

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSPWLQSVVLN 441
            E VK  RL  L     E  +  N    G++ ++++E    K++    GR+   + V+  
Sbjct: 349 PEEVKRVRLQQLMDIQNEISLELNKTMEGKVFDIIVEGPSAKDETMWFGRTSGNKMVLFP 408

Query: 442 SKNH-NIGDIIKVRITDVKISTLYGEL 467
             +   IGD +   I   +    YG +
Sbjct: 409 KDDELTIGDTVPAYIDKAQTWVCYGTI 435


>gi|193214302|ref|YP_001995501.1| RNA modification enzyme, MiaB family [Chloroherpeton thalassium
           ATCC 35110]
 gi|229890479|sp|B3QVA0|MIAB_CHLT3 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|193087779|gb|ACF13054.1| RNA modification enzyme, MiaB family [Chloroherpeton thalassium
           ATCC 35110]
          Length = 451

 Score =  292 bits (747), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 170/450 (37%), Positives = 260/450 (57%), Gaps = 20/450 (4%)

Query: 21  CIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKV 80
           C    R ++++YGCQMN  D+  +  +    GY    S   AD+I LNTC +RE A +++
Sbjct: 14  CNQKARVYLETYGCQMNFSDTEIISSILSDAGYAIAESEQVADIIFLNTCAVRENAEQRI 73

Query: 81  YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140
            + L  +R LK    K+   L+V V GC+A+   E++ +   IV+++ GP  Y  LP LL
Sbjct: 74  RNRLQNLRPLK----KQNPKLIVGVLGCMAERLREKLFQEEKIVDLIAGPDAYRTLPNLL 129

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           + A  G++  +   S+E+ +  ++ +     RK G +AFL I  GCD  C FC+VPYTRG
Sbjct: 130 DLAESGEKAANVMLSLEETYADINPL-----RKNGHSAFLAIMRGCDNMCAFCIVPYTRG 184

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E SR ++ ++DE ++L D G  E+TLLGQNVN++     +     F++L+   S +   
Sbjct: 185 RERSRPMTSILDELKQLSDEGTREVTLLGQNVNSYYD---ENSGTRFANLMDKASLVNPN 241

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
           +R+R+TTSHP+D+S  LI    +   L  ++HLPVQSGS R+L+ MNR HT  +Y + I 
Sbjct: 242 MRIRFTTSHPKDISSELIDVIAERKNLCEFIHLPVQSGSSRMLELMNRGHTREDYLEKIA 301

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML- 379
            I+S  P+ +IS+D I GF  ET+ D  AT+ L+ ++ Y  AF+F YS R  TP +  L 
Sbjct: 302 LIKSKIPNCSISTDMISGFCTETEADHAATLSLLREVRYDYAFTFVYSVRPNTPAATRLN 361

Query: 380 EQVDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL-VGRSPWL 435
           + V ++VK  RL   + LQ+K+   ++  ND  +G   EVLIE   K    + +GR+   
Sbjct: 362 DDVPDDVKQRRLSEVIALQQKI-SAELYRND--IGNTHEVLIEGESKRSSDMWMGRARNN 418

Query: 436 QSVVLNSKNHNIGDIIKVRITDVKISTLYG 465
           + VV       +GD + V+ITD   +TL G
Sbjct: 419 RVVVFPKNGAQVGDFVNVKITDATSATLIG 448


>gi|332799273|ref|YP_004460772.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Tepidanaerobacter sp. Re1]
 gi|332697008|gb|AEE91465.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Tepidanaerobacter sp. Re1]
          Length = 437

 Score =  292 bits (747), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 174/453 (38%), Positives = 272/453 (60%), Gaps = 28/453 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           ++ + ++GCQMN++DS  +  +    GY   +++ ++D+I+LNTC +RE A  KVY   G
Sbjct: 2   KYKILTWGCQMNIHDSEIISGVMQKMGYCPADTLQESDVIILNTCCVRENAERKVY---G 58

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERA 143
           RI  LK  + K   +L++ V+GC+ Q     E I  + P V+++ G +  ++LPEL+E  
Sbjct: 59  RIAQLKQFKSK-NPNLILAVSGCMVQQPHVVEYISEKLPYVDILFGIKNVHKLPELIEST 117

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRG--VTAFLTIQEGCDKFCTFCVVPYTRGI 201
           R       T+  V D     S++D     K      A++TI  GC+ +C++C+VPY RG 
Sbjct: 118 R------QTNLPVID-ISGDSMIDENLPIKHTNDAKAWVTITYGCNNYCSYCIVPYVRGK 170

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E+SR    ++ E   L +NG  EI LLGQNVN++ GK L+    TF +LL  ++++ G+ 
Sbjct: 171 EVSRRPDDILREIETLANNGFIEINLLGQNVNSY-GKDLNI-PVTFPELLRRVNDVDGIK 228

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+ TSHP+D+S+ LI A  D   +  ++HLPVQSGS++IL  MNR++T   Y ++I +
Sbjct: 229 RIRFITSHPKDLSNELILAMRDCKKVCEHIHLPVQSGSNQILSKMNRKYTREHYIELIYK 288

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R   P+IAI++D IVGFPGET+ DF  T++LV  + +  AF+F YS R GTP + M +Q
Sbjct: 289 LRDAIPNIAITTDIIVGFPGETEKDFLDTLELVKAVEFDSAFTFMYSKRKGTPAAKMADQ 348

Query: 382 VDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG---KLVGRSPWL 435
           +D ++K +   RL+ LQ  + E   S N+   G I EVL+E  G  KG   +L GRS   
Sbjct: 349 IDNDIKKDRLNRLMQLQDAITE---SKNNRLKGTIQEVLVE--GVSKGNINRLSGRSRTN 403

Query: 436 QSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           + V  +     IG ++ V+I +    +L GE+V
Sbjct: 404 KLVNFDGSEKLIGKLVNVKIIEPHTWSLLGEIV 436


>gi|116670023|ref|YP_830956.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Arthrobacter
           sp. FB24]
 gi|229890444|sp|A0JUY6|MIAB_ARTS2 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|116610132|gb|ABK02856.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Arthrobacter sp. FB24]
          Length = 522

 Score =  292 bits (747), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 168/449 (37%), Positives = 268/449 (59%), Gaps = 32/449 (7%)

Query: 25  QRFF-VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           QR + V+++GCQMNV+DS RM  M    GY    S ++AD++V NTC +RE A  K+Y  
Sbjct: 27  QRTYQVRTFGCQMNVHDSERMAGMLEDAGYVPA-SGENADVVVFNTCAVRENADNKLYGN 85

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LG +  +K +       + + V GC+AQ + E IL+++P V+ V G      LP LL+RA
Sbjct: 86  LGMLAPVKAA----NPGMQIAVGGCLAQKDRETILKKAPWVDAVFGTHNVGALPALLDRA 141

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRG--VTAFLTIQEGCDKFCTFCVVPYTRGI 201
           R        + +  +  E L +       KR    + +++I  GC+  CTFC+VP  RG 
Sbjct: 142 RH------NNEAQLEILESLDVFPSTLPTKRDSVYSGWVSISVGCNNTCTFCIVPALRGK 195

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGL 260
           E  R    ++ E + L+D+G  E+TLLGQNVN++   G++ G++  FS LL +  EI+GL
Sbjct: 196 EKDRRPGDILAEIQALVDDGAIEVTLLGQNVNSY---GVEFGDRQAFSKLLRACGEIQGL 252

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+T+ HP   +D +I A  +   +MP LH+P+QSGSD++LK M R + + ++  I+D
Sbjct: 253 ERVRFTSPHPAAFTDDVIDAMAETPNVMPQLHMPLQSGSDKVLKDMKRSYRSTKFLGILD 312

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R   P  AIS+D IVGFPGET++DF+AT+D+V+K  +A AF+F+YS R GTP +++ +
Sbjct: 313 KVRERIPHAAISTDIIVGFPGETEEDFQATLDVVEKSRFATAFTFQYSKRPGTPAADLPD 372

Query: 381 QVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIE----KHGKEKGKLVGRSP 433
           Q+ + V   + ERL  LQ ++  ++   N   +G+ +EV++     +  +E  +L GRS 
Sbjct: 373 QLPKAVVQERFERLTALQDRIAAEE---NARQLGRRVEVMVTAQSGRKSEETHRLSGRSQ 429

Query: 434 WLQ----SVVLNSKNHNIGDIIKVRITDV 458
             +    SV   ++    GD++ V IT+ 
Sbjct: 430 DQRLVHFSVPEGAEKPRPGDLVTVTITEA 458


>gi|225018519|ref|ZP_03707711.1| hypothetical protein CLOSTMETH_02466 [Clostridium methylpentosum
           DSM 5476]
 gi|224948720|gb|EEG29929.1| hypothetical protein CLOSTMETH_02466 [Clostridium methylpentosum
           DSM 5476]
          Length = 496

 Score =  291 bits (746), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 175/445 (39%), Positives = 258/445 (57%), Gaps = 20/445 (4%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
            ++YGCQ NV D  ++  +    GYE  +  D+AD I+ NTC +RE A ++V+  +G + 
Sbjct: 43  TRTYGCQANVADGEKIRGILHEIGYEFTDEPDEADFILFNTCAVRENAEDRVFGNIGALA 102

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERA-RF 145
           +LK    KE  +L++ V GC+ Q E   E+I +  P V +V G    +RLPEL+ RA   
Sbjct: 103 HLK----KENPNLIIAVCGCMMQQEHIVEKIRKSYPYVGLVFGTHVVHRLPELVYRALTE 158

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            KRV D+  S     E L +V     R+ G  A+L I  GC+ FCT+C+VPY RG E SR
Sbjct: 159 HKRVFDSTQSDGVIAEDLPVV-----REEGSKAWLPIMYGCNNFCTYCIVPYVRGRERSR 213

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
               ++ EAR+L+ +G  EITLLGQNVN++ GK L  +   FS LL  +++I G  R+R+
Sbjct: 214 EPDAILREARQLVADGYKEITLLGQNVNSY-GKNLP-QPIRFSQLLRMINDIPGDFRIRF 271

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
            TSHP+D +  LI    D D +  +LHLPVQ GSD IL+ MNR +T  +Y ++++  +  
Sbjct: 272 MTSHPKDATRELIDTIADCDKVCNHLHLPVQCGSDEILRRMNRGYTCEQYLELVEYAKKR 331

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P +++SSD IVGFPGET ++F+ T+ L++ +GY   ++F YS R+GT  +N  + VD  
Sbjct: 332 IPGLSLSSDIIVGFPGETYENFQGTLKLIEAVGYDLLYTFIYSKRVGTKAANYDDPVDPK 391

Query: 386 VKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
            K+     LL +Q K+   + +F +  VGQ   VL++  GK++G L GR      V    
Sbjct: 392 EKSRWFRELLEVQAKI--GRANF-EGYVGQTARVLVDGTGKKEGMLTGRDEHNILVEFEG 448

Query: 443 KNHNIGDIIKVRITDVKISTLYGEL 467
               IG    V+IT    + L G L
Sbjct: 449 PPALIGSFADVKITQAHQAALVGSL 473


>gi|307109122|gb|EFN57360.1| hypothetical protein CHLNCDRAFT_30275 [Chlorella variabilis]
          Length = 524

 Score =  291 bits (746), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 170/455 (37%), Positives = 260/455 (57%), Gaps = 22/455 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +++ + ++GCQMN  DS RM       GY  V     AD++V NTC IREKA  K+YS L
Sbjct: 80  KKYHIITFGCQMNSADSERMAGCLEEAGYRCVEEAGHADVLVYNTCSIREKAELKLYSAL 139

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR    K   +   GDL +VVAGCVA  EG  +LRR P V++V+GP    R+ +LLE+  
Sbjct: 140 GRQAKRKRQHM---GDLKIVVAGCVAAQEGHALLRRVPEVDLVMGPHHANRIGDLLEQVE 196

Query: 145 FGKRVVDTDYS-VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            G +VV  +++ +E+             R   +TA++ +  GC++ CT+C+VP+TRG E 
Sbjct: 197 AGSQVVAVEHAPIEEDIT-------APRRDSAITAWVNVIHGCNEKCTYCIVPFTRGQEQ 249

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG--------EKCTFSDLLYSLS 255
           SR+   +  E   L + G  E+TLLGQNV+A+ G+ L G           TF+DLL  + 
Sbjct: 250 SRTPEAIRREMLSLGEAGYREVTLLGQNVDAY-GRDLPGFAPDNSGRRAWTFNDLLRHVH 308

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
           ++ G+ R+R+ TSHPR  ++ LI+A  +LD L  + H+P QSG + IL+ M R +T   Y
Sbjct: 309 DVPGIARIRFATSHPRYFTERLIRACAELDKLCEFFHVPFQSGDNYILREMKRGYTHERY 368

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
           R+++  IR   PD +IS D IVGFPGE+++ F  T+ LV+++G+ +  +  YSPR GTP 
Sbjct: 369 REMVHTIRRHMPDASISGDAIVGFPGESEEQFERTVALVEEVGFDRVNTAAYSPRPGTPA 428

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSPW 434
           +    QV + VKA+RL  L   +           +G+ +EVL+E  + ++  + VGR+  
Sbjct: 429 AVWDGQVADLVKADRLNRLNAVVNRVAEERAQRFLGRELEVLVEGPNPRDPAQAVGRTRH 488

Query: 435 LQSVVLNSKNHNI-GDIIKVRITDVKISTLYGELV 468
            + +        + G ++ VR+  V   TLYG + 
Sbjct: 489 NKLLYFAGDGEALRGQLVDVRVDRVHAYTLYGSMA 523


>gi|332879166|ref|ZP_08446867.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Capnocytophaga sp. oral
           taxon 329 str. F0087]
 gi|332682966|gb|EGJ55862.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Capnocytophaga sp. oral
           taxon 329 str. F0087]
          Length = 482

 Score =  291 bits (746), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 177/463 (38%), Positives = 260/463 (56%), Gaps = 30/463 (6%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ +++SYGCQMN  DS  +  +    GY   +S+DDADL+++NTC +R+KA + +   L
Sbjct: 24  KKLYIESYGCQMNFSDSEIVASILSKVGYNTTDSVDDADLVLINTCSVRDKAEQTIRKRL 83

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            +    K  +      + V V GC+A+      L    IV++VVGP  Y  LP LLE   
Sbjct: 84  EQFNVYKRKKPA----MKVGVLGCMAERVKHAFLEEEKIVDMVVGPDAYKDLPNLLEEVE 139

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G+  V+   S ++ +  ++ +    N   GVTAF++I  GCD  CTFC+VP+TRG E S
Sbjct: 140 GGREAVNVILSKDETYADIAPIRLNSN---GVTAFVSITRGCDNMCTFCIVPFTRGRERS 196

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNA--WRGKGL--DGEKCT---------FSDLL 251
           R    +++E   L   G  E+TLLGQNV++  W G GL  D  K T         F+ LL
Sbjct: 197 RDPFSIINEIGDLQARGFKEVTLLGQNVDSYLWYGGGLKKDFSKATEMQQATAINFAKLL 256

Query: 252 YSLSEIKGLVRLRYTTSHPRDMS----DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307
             ++     +R+R++TS+P+DM+    D + K H     +  Y+HLPVQSGS+RILK+MN
Sbjct: 257 DMVATAYPKMRIRFSTSNPQDMTFEVIDTMAKHHN----ICKYIHLPVQSGSNRILKAMN 312

Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           R HT  EY  +ID IR   PD AIS D I GFP ET++D R T+ L++ + Y   F F Y
Sbjct: 313 RMHTREEYFALIDGIRQRIPDCAISQDMITGFPTETEEDHRDTLSLMEYVKYDFGFMFAY 372

Query: 368 SPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG 426
           S R GT  +  +++ V E VK  RL  +    +   +    A VG  +EVLIE + K+  
Sbjct: 373 SERPGTLAARKIVDDVPEEVKKRRLTEIIDLQQAHSLYRTQAQVGNTVEVLIEGNSKKSD 432

Query: 427 K-LVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           +  +GR+     VV   +++ IGD + V+ITD   +TL G+ V
Sbjct: 433 QEWMGRNSQNTVVVFPKEDYKIGDFVMVKITDCTSTTLIGKAV 475


>gi|325962847|ref|YP_004240753.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Arthrobacter
           phenanthrenivorans Sphe3]
 gi|323468934|gb|ADX72619.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Arthrobacter
           phenanthrenivorans Sphe3]
          Length = 519

 Score =  291 bits (746), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 168/449 (37%), Positives = 270/449 (60%), Gaps = 31/449 (6%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+ + V+++GCQMNV+DS RM  M    GY +    + AD++V NTC +RE A  K+Y  
Sbjct: 29  PRTYQVRTFGCQMNVHDSERMAGMLEDAGYVQAEG-EQADVVVFNTCAVRENADNKLYGN 87

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LG +  +K +       + + V GC+AQ + E IL+++P V+ V G      LP LLERA
Sbjct: 88  LGILAPVKAANPG----MQIAVGGCLAQKDRETILKKAPWVDAVFGTHNVGALPALLERA 143

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGV--TAFLTIQEGCDKFCTFCVVPYTRGI 201
           R      +++  +E   E L +       KR    + +++I  GC+  CTFC+VP  RG 
Sbjct: 144 RH-----NSEAQLE-ILESLDVFPSTLPTKRDSVYSGWVSISVGCNNTCTFCIVPALRGK 197

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGL 260
           E  R    ++ E + L+D+G  E+TLLGQNVN++   G++ G++  FS LL +   I GL
Sbjct: 198 EKDRRPGDILAEIQALVDDGAIEVTLLGQNVNSY---GVEFGDRLAFSKLLRACGGIDGL 254

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+T+ HP   +D +I+A  +   +MP LH+P+QSGSDRIL++M R + + ++  I+D
Sbjct: 255 ERVRFTSPHPAAFTDDVIEAMAETPNVMPQLHMPLQSGSDRILRAMKRSYRSTKFLGILD 314

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R   P  AIS+D IVGFPGET++DF+AT+D+V++  +A AF+F+YS R GTP +++ +
Sbjct: 315 KVRERIPHAAISTDIIVGFPGETEEDFQATLDVVEQSRFATAFTFQYSKRPGTPAADLPD 374

Query: 381 QVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKG---KLVGRSP 433
           Q+ + V   + ERL  LQ ++  ++   N   +G+ +EV++  + G++ G   +L GRS 
Sbjct: 375 QLPKAVVQERFERLTALQDRIAAEE---NQRQLGRRVEVMVTAQSGRKAGETHRLSGRSR 431

Query: 434 WLQ----SVVLNSKNHNIGDIIKVRITDV 458
             +    SV   +     GD++ V IT+ 
Sbjct: 432 DQRLVHFSVPEGAPAPRPGDLVTVTITEA 460


>gi|315924594|ref|ZP_07920813.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Pseudoramibacter
           alactolyticus ATCC 23263]
 gi|315622124|gb|EFV02086.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Pseudoramibacter
           alactolyticus ATCC 23263]
          Length = 443

 Score =  291 bits (746), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 163/442 (36%), Positives = 257/442 (58%), Gaps = 15/442 (3%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           +YGCQMN  DS ++  M  + GY        A L+V+NTC +RE A  + +  +G  +++
Sbjct: 13  TYGCQMNENDSEKLSGMLKAMGYTPTEDETTAGLVVMNTCSVRENADVRFFGNVGNFKHI 72

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERARF-GK 147
           K    K+  DL++ V GC+ Q     ++I   +P V++V G    +R PELL   +  G 
Sbjct: 73  K----KKNPDLILAVCGCMMQQPQIVKKIKEDNPQVDIVFGTHNLHRFPELLANYQASGN 128

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
           R ++     +   E L +     +R+    ++++I +GC+ FCT+C+VPYTRG E+SR  
Sbjct: 129 RTIEIYDDDDGLIENLPV-----DRRYPFKSYVSIMKGCNNFCTYCIVPYTRGREVSRPH 183

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
            +++DE + L+ +G  E+TLLGQNVN++     DG    F+DLL  ++ I+GL R+R+ T
Sbjct: 184 EKIIDEVKALVADGCLEVTLLGQNVNSYGNDRKDGYG--FADLLRDVNAIEGLERIRFMT 241

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
           SHP+DM+D +I A    D + P +HL VQSGS ++LK+M+R +T  +   +++++    P
Sbjct: 242 SHPKDMTDEVIDAVAACDKVCPVVHLAVQSGSTKVLKAMHRGYTKEKIIALVEKMHKRIP 301

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
            +AI++D IVGFPGET+ DF  T+D+V +  +  AFSF YS R GTP + M +Q+ EN+K
Sbjct: 302 HVAITTDLIVGFPGETETDFEETLDIVRRCHFDAAFSFLYSIRTGTPAAKMPDQIPENIK 361

Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSPWLQSVVLNSKNHN 446
            ERL  L K L  +    N     Q ++VL+E K    + +L GR+   + V  +     
Sbjct: 362 HERLNRLLKVLHSEGNERNLWFQDQTVDVLVEGKSTHNEDRLTGRTMNGKLVNFDGNAAT 421

Query: 447 IGDIIKVRITDVKISTLYGELV 468
           IG I+ V I   +  +L G  V
Sbjct: 422 IGTIVPVHIDCARTFSLDGHAV 443


>gi|303228532|ref|ZP_07315360.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Veillonella atypica
           ACS-134-V-Col7a]
 gi|302516779|gb|EFL58693.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Veillonella atypica
           ACS-134-V-Col7a]
          Length = 438

 Score =  291 bits (746), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 161/447 (36%), Positives = 255/447 (57%), Gaps = 17/447 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + +++ +YGCQMN  DS R+       GY   + ++ ADLI+LNTC +RE A  KV+  +
Sbjct: 2   KSYYIYTYGCQMNTADSERLSHQLEIVGYIPTDDVESADLILLNTCAVRETAETKVFGRI 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-ERA 143
           G ++ LK    ++  +L++ + GC+AQ    E+ +R+P +++V+G      + E++ E  
Sbjct: 62  GELKRLK----QKNKNLIIAITGCMAQKNQAEMFKRAPHIDIVLGTHNIQHINEMIAEVQ 117

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           R  K  ++ D       E  +  +G +       A++ I  GC+KFCT+C+VP+ RG EI
Sbjct: 118 RTHKHQINVDMDNTVLPELQAKPNGTF------FAWVPIMNGCNKFCTYCIVPHVRGREI 171

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT-FSDLLYSLSEIKGLVR 262
           SR +  +V E  +L   G  EITLLGQNVN++   GLD +  T F  L+ +L  I G+ R
Sbjct: 172 SRPVEAIVKEVTELGAKGFKEITLLGQNVNSY---GLDFKDGTDFGTLVDALDHIPGIER 228

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +RY TSHP+DM+  +I A G    ++ +LHLP+QSGSDRILK MNR +T   Y++++   
Sbjct: 229 IRYMTSHPQDMTKSMIDALGRSSNIVTHLHLPIQSGSDRILKKMNRHYTVEHYKELLSYC 288

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R    ++ +++D IVGFPGET++DF  T+ L+  + Y  A++F YS R GTP + M EQV
Sbjct: 289 REKIKNVVVTTDIIVGFPGETEEDFEQTLQLLKDVRYDMAYTFIYSKRSGTPAATMDEQV 348

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSPWLQSVVLN 441
            E VK  RL  L     E  +  N    G++ ++++E    K++    GR+   + V+  
Sbjct: 349 PEEVKRVRLQQLMDIQNEISLELNKTMEGKVFDIIVEGPSAKDETMWFGRTSGNKMVLFP 408

Query: 442 SKNH-NIGDIIKVRITDVKISTLYGEL 467
             +   IGD +   I   +    YG +
Sbjct: 409 KDDELTIGDTVPAYIDKAQTWVCYGTI 435


>gi|296139507|ref|YP_003646750.1| RNA modification enzyme, MiaB family [Tsukamurella paurometabola
           DSM 20162]
 gi|296027641|gb|ADG78411.1| RNA modification enzyme, MiaB family [Tsukamurella paurometabola
           DSM 20162]
          Length = 503

 Score =  291 bits (746), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 163/452 (36%), Positives = 260/452 (57%), Gaps = 23/452 (5%)

Query: 17  IVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA 76
           ++D     + + V++YGCQMNV+DS R+  +    GY R +  + ADL+V NTC +RE A
Sbjct: 1   MIDPAQQSRTYEVRTYGCQMNVHDSERLSGLLEDAGYVRADGGEQADLVVFNTCAVRENA 60

Query: 77  AEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL 136
             K+Y  L  +  +K  R      + + V GC+AQ +   +++++P V+VV G      L
Sbjct: 61  DNKLYGNLSHLAPIKRERPG----MQIAVGGCLAQKDRGTVVKKAPWVDVVFGTHNIGSL 116

Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
           P LLERAR  ++         D F           R+     +++I  GC+  CTFC+VP
Sbjct: 117 PTLLERARHNEKAEVEIKEALDAFPSTLPA----RRESAYAGWVSISVGCNNTCTFCIVP 172

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW----RGKGLDGEKCTFSDLLY 252
             RG E+ R    ++ E   L+D GV E+TLLGQNVNA+        L  +K  F+DLL 
Sbjct: 173 SLRGKEVDRRPGDILAEVHALVDQGVSEVTLLGQNVNAYGVNFADPDLPRDKGAFADLLR 232

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
           +   I+GL R+R+T+ HP + +D +I A  +   + P LH+P+QSGSD +LK M R + +
Sbjct: 233 ACGRIEGLERVRFTSPHPAEFTDDVIDAMAETPNICPQLHMPLQSGSDTVLKDMRRSYRS 292

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
            ++  I+DR+R   P  AI++D IVGFPGET++DF+AT+D+V+K  ++ AF+F+YS R G
Sbjct: 293 TKFLGILDRVRERIPHAAITTDIIVGFPGETEEDFQATLDVVEKARFSSAFTFQYSIRPG 352

Query: 373 TPGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIE----KHGKEK 425
           TP +++ +QV + V  E   RL+ LQ+++  ++   N   VG+ +E+L+     +     
Sbjct: 353 TPAADLPDQVPKQVVQERYDRLIALQERITLEE---NRKQVGRRVELLVALGEGRKDAAT 409

Query: 426 GKLVGRSPWLQSV-VLNSKNHNIGDIIKVRIT 456
            ++ GR+   + V    S +   GD+++V IT
Sbjct: 410 KRMSGRARDGRLVHFAGSTDIRPGDVVEVEIT 441


>gi|325279819|ref|YP_004252361.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Odoribacter splanchnicus DSM 20712]
 gi|324311628|gb|ADY32181.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Odoribacter splanchnicus DSM 20712]
          Length = 443

 Score =  291 bits (746), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 167/448 (37%), Positives = 261/448 (58%), Gaps = 14/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++F++++YGCQMNV DS  +  +  + G+E     ++AD+I++NTC +RE A ++V    
Sbjct: 3   KKFYIETYGCQMNVADSEVVAAILTAAGFEHTTDKNEADVILVNTCSVRENAEQRVR--- 59

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR++     R K    LLV V GC+A+  G ++      VN+VVGP  Y  LP L+E+A 
Sbjct: 60  GRVQGFSEIR-KRNPHLLVGVMGCMAERLGAKLFEEEKNVNIVVGPDAYMDLPLLIEQAA 118

Query: 145 FGKRVVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            GK+ ++ + S  + ++ +  S +D     +  ++ F++I  GC+ FCT+C+VPYTRG E
Sbjct: 119 QGKKAINIELSTTETYKDICPSRID-----ETAISGFVSIMRGCNNFCTYCIVPYTRGRE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SRS   +V E   L   G  E+TLLGQNVN++  K  +  +  F  LL  ++     +R
Sbjct: 174 RSRSPHSIVGEVIDLQRRGYKEVTLLGQNVNSYLYKD-EQTRVDFPALLELVARTVPDMR 232

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+ TSHP+DMSD  ++       +   +HLPVQSGS+ +LK MNR++T   Y   I  I
Sbjct: 233 IRFATSHPKDMSDKTLETIARWPNICKAIHLPVQSGSNSVLKDMNRKYTREWYLDRIAAI 292

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML-EQ 381
           R + PD  IS+D  VGF  E+++D+R T++L+ ++G+  A+ FKYS R GT  S  L + 
Sbjct: 293 RRIVPDCGISTDVFVGFHNESEEDYRQTLELMREVGFDLAYMFKYSERPGTQASKSLPDN 352

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLVGRSPWLQSVVL 440
           +DE  K  RL  L        +  N   +G+  EVL+E   K+   ++ GRS   + +V 
Sbjct: 353 IDETTKGRRLQELIDLQTGWSLESNRRDIGKTFEVLVEGVSKKSSDEMFGRSSQNKVIVF 412

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
            +KN  IG +I+V+I D   +TL GE+ 
Sbjct: 413 PAKNIPIGSLIQVKIKDCTSATLIGEIA 440


>gi|218961210|ref|YP_001740985.1| tRNA-i(6)A37 modification enzyme MiaB [Candidatus Cloacamonas
           acidaminovorans]
 gi|167729867|emb|CAO80779.1| tRNA-i(6)A37 modification enzyme MiaB [Candidatus Cloacamonas
           acidaminovorans]
          Length = 427

 Score =  291 bits (746), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 166/442 (37%), Positives = 263/442 (59%), Gaps = 23/442 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +F++++YGCQMNV DS  +  +    G++ V  + +ADL++ NTC +R  A E+V   LG
Sbjct: 2   KFYIETYGCQMNVADSELIASILTKAGHQEVTQISEADLLLFNTCSVRGHAEERV---LG 58

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           RI++ +N R KE  +L + V GC+AQ  GEEI +    V+ V+G   Y  LP++L     
Sbjct: 59  RIQS-ENHRKKENPNLKIGVVGCMAQRLGEEINKEKLTVDFVIGVDQYQHLPDILNEE-- 115

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            ++ + TD    D+ +    +   Y+      A++TI  GC+ FC++C+VPY RG E SR
Sbjct: 116 TEKTILTDL---DETQLYKGIQPAYHN--DYCAYITIMRGCNNFCSYCIVPYVRGRERSR 170

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           S   +++E     + G  +ITLLGQNVN++    L+GE   F  LL  L+E+  + RLR+
Sbjct: 171 SWQDIIEETISAGNQGKKDITLLGQNVNSY----LNGE-VNFPRLLIILNELDEIYRLRF 225

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
            TSHP+D+S+ LI+   +   +  ++HLPVQSGSD ILK+MNR +T   Y  +++++   
Sbjct: 226 ITSHPKDLSEELIEVLANSAKICEHIHLPVQSGSDNILKAMNRNYTVQHYISLVEKLHKF 285

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P+IAI++D + GFPGET++DF+ T+ L+  I +  AF +K+SPR GT    +  QV E 
Sbjct: 286 IPNIAITTDIMTGFPGETENDFQDTLSLMKTIEFDDAFCYKFSPRPGTTAETLSNQVPE- 344

Query: 386 VKAERLLCLQKKL---REQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GRSPWLQSVVLN 441
             AERL  LQ+ +   R+  +  N   +G+ +EV IE   K+  K+V G++   ++ VL 
Sbjct: 345 --AERLARLQQMIDLQRKISLKKNREQIGRKVEVYIESFSKKSRKMVLGKTRDFKTAVLP 402

Query: 442 SKNHNIGDIIKVRITDVKISTL 463
               + G + ++ + D   STL
Sbjct: 403 GTEDDFGTLKQIEVKDATASTL 424


>gi|255326358|ref|ZP_05367442.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Rothia mucilaginosa ATCC
           25296]
 gi|255296575|gb|EET75908.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Rothia mucilaginosa ATCC
           25296]
          Length = 504

 Score =  291 bits (746), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 161/449 (35%), Positives = 263/449 (58%), Gaps = 30/449 (6%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+ + V+++GCQMNV+DS RM  +  + GY R       DL+V NTC +RE A+ ++Y  
Sbjct: 16  PRTYEVRTFGCQMNVHDSERMSGLLEANGYVRAEEGTQPDLVVFNTCAVRENASNRLYGN 75

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LG++  +K  R  +G  + + V GC+AQ + + I+ ++P V+VV G      LP LLERA
Sbjct: 76  LGQLAPVK--RAHKG--MQIAVGGCLAQKDQDAIIEKAPWVDVVFGTHNIGALPTLLERA 131

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRG--VTAFLTIQEGCDKFCTFCVVPYTRGI 201
           R          +  +  E L +       KR    + +++I  GC+  CTFC+VP  RG 
Sbjct: 132 RHNHE------AQAELLESLEVFPSTLPTKRDHVYSGWVSISVGCNNTCTFCIVPSLRGK 185

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGL 260
           E  R    ++ E + L+D+G  E+TLLGQNVN++   G++ G++  FS LL +  EI+GL
Sbjct: 186 EKDRRPGDILAEVQALVDDGAIEVTLLGQNVNSY---GVEFGDRQAFSKLLRACGEIEGL 242

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+T+ HP   +D +I A  +   +MP LH+P+QSGSD++LK M R + + ++  I+D
Sbjct: 243 ERVRFTSPHPAMFTDDVIDAMAETPNVMPVLHMPLQSGSDKVLKDMRRSYRSKKFLNILD 302

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R   P+  I++D IVGFPGET++DF+ T+ +V++  ++ AF+F+YS R GTP + M  
Sbjct: 303 KVRERIPNAVITTDIIVGFPGETEEDFQDTLKVVEQARFSSAFTFQYSIRPGTPAATMEN 362

Query: 381 QVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG----KLVGRSP 433
           Q+ + V   + ERL+ LQ ++  ++   N   +G+ +E+++      K     +L GR P
Sbjct: 363 QIPKEVVQERYERLIALQDRIAGEE---NRKQLGKTVELMVVAEAGRKAEQTHRLSGRGP 419

Query: 434 WLQ----SVVLNSKNHNIGDIIKVRITDV 458
             +    SV    +    GD++ V IT+ 
Sbjct: 420 DQRLVHFSVPEGCETPRPGDMVTVPITEA 448


>gi|256840979|ref|ZP_05546486.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Parabacteroides sp. D13]
 gi|256736822|gb|EEU50149.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Parabacteroides sp. D13]
          Length = 457

 Score =  291 bits (746), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 168/450 (37%), Positives = 269/450 (59%), Gaps = 19/450 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F+++YGCQMNV DS  +  +    GY    ++++AD I +NTC +R+ A +K+Y  L
Sbjct: 19  RKLFIETYGCQMNVADSEVVASIMKMDGYSMTENIEEADAIFVNTCSVRDNAEQKIYGRL 78

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
              ++LK    ++   L+V V GC+A+   E+++      ++VVGP +Y  LP L+    
Sbjct: 79  QYFQSLK----RKKKSLIVGVLGCMAERVKEDLIHVHH-ADLVVGPDSYLDLPNLVGAVE 133

Query: 145 FGKRVVDTDYSVEDKFER-LSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            G++ ++ + S ++ ++  + +   G +    ++ F++I  GC+ FCT+C+VPYTRG E 
Sbjct: 134 HGEKAINVELSTQETYKDVIPLKLPGVH----ISGFVSIMRGCNNFCTYCIVPYTRGRER 189

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR +  +++E R + + G  E+TLLGQNVN++  +  +GE  TF  LL  +++    +R+
Sbjct: 190 SRDIESILNEIRDMHEKGFKEVTLLGQNVNSYSFEK-EGETITFPILLDRVAKEVPDMRI 248

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+TTSHP+DMSD  ++     D +  ++HLP QSGS RIL  MNR++T   Y   I  IR
Sbjct: 249 RFTTSHPKDMSDDTLRVIAANDNICKFIHLPAQSGSSRILMVMNRKYTREWYLDRIAAIR 308

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE-QV 382
            + PD AIS+D   GF  ET+ D++ T+ L+ ++GY  AF FKYS R GT  ++ LE  V
Sbjct: 309 RIVPDCAISTDLFCGFHSETEGDYQETLSLMREVGYDSAFLFKYSERPGTYAASHLEDNV 368

Query: 383 DENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSV 438
            E  K  RL   + LQ KL E+    N   +G+  EVLIE   K  + +L GR+   + V
Sbjct: 369 PEEEKVRRLQGMIDLQNKLSEES---NLRDIGKTFEVLIEGFSKRSREQLFGRTSQNKVV 425

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           + + KN+++G  IKV+I     +TL+GE V
Sbjct: 426 IFDKKNYHVGQFIKVKIHKASSATLFGEPV 455


>gi|294508608|ref|YP_003572667.1| 2-methylthioadenine synthetase [Salinibacter ruber M8]
 gi|294344937|emb|CBH25715.1| 2-methylthioadenine synthetase [Salinibacter ruber M8]
          Length = 613

 Score =  291 bits (746), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 163/447 (36%), Positives = 262/447 (58%), Gaps = 9/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ ++++YGCQMNV DS  +  +    GY        AD+++LNTC IRE A  K+ + L
Sbjct: 152 KQVYIETYGCQMNVNDSGIVASVLEESGYGLTRDQAAADVVLLNTCAIRENAERKIRARL 211

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-ERA 143
             +R+ K  R    G+L++ V GC+A+   E++L +  +V+VVVGP  Y  LP+LL E  
Sbjct: 212 SMLRSEKEKR---DGELMLGVLGCMAERLREKLLEQEDLVDVVVGPDAYRDLPQLLYEAD 268

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             G+  V+ + S ++ +E +  V    N   GV+A+++I  GCD  CTFCVVP+TRG E 
Sbjct: 269 ATGQAAVNVELSKQETYEDIQPVRYDSN---GVSAYVSIMRGCDNMCTFCVVPFTRGREE 325

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR ++ ++ E  +L + G  E+TLLGQNVN++     DG   +F++L+  +S +   +R+
Sbjct: 326 SRPVTTILSEVARLAEEGYKEVTLLGQNVNSYHYTDADGTSVSFAELVDRVSRVSPEMRV 385

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           RY+TSHP+D +D L+K H D   +  Y+HLPVQ G+  +L  M R +T  EY  + +R +
Sbjct: 386 RYSTSHPKDCTDDLLKVHRDRPNVCNYIHLPVQHGNTEVLDRMRRTYTREEYLALTERAK 445

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE-QV 382
            + P +++S+D I GF GET+     T+ L++++ Y  A+ FKYS R  T  +   E  V
Sbjct: 446 ELCPGVSLSTDLIAGFCGETEAQHEDTLSLMEEVRYDHAYMFKYSERPQTYAARKYEDDV 505

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441
            E+ K  RL  + +   +     N+A VG++  VL+E   K+   +  GR+   + VV +
Sbjct: 506 PEDTKQRRLEEIIELQNQHAKESNEAEVGRVHTVLVEGPSKKSDAQFFGRTDTNKGVVFD 565

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
            +++  GD ++VRI D   STL G  +
Sbjct: 566 REDYEKGDYVRVRIEDCTSSTLLGTAI 592


>gi|227833318|ref|YP_002835025.1| 2-methylthioadenine synthetase [Corynebacterium aurimucosum ATCC
           700975]
 gi|227454334|gb|ACP33087.1| 2-methylthioadenine synthetase [Corynebacterium aurimucosum ATCC
           700975]
          Length = 520

 Score =  291 bits (745), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 154/420 (36%), Positives = 241/420 (57%), Gaps = 22/420 (5%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+ + V+++GCQMNV+DS R+  +    GY    +  + DLIV NTC +RE A +++Y  
Sbjct: 22  PRTYEVRTFGCQMNVHDSERISGLLEEAGYSAAPNGTEPDLIVFNTCAVRENADKRLYGT 81

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LG ++  K +       + + V GC+AQ + + +L  +P V+ V G      LP LLERA
Sbjct: 82  LGALKKTKENHPG----MQIAVGGCLAQKDKDTVLDHAPWVDAVFGTHNMAALPALLERA 137

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           R      +    + D  E    V     R+     ++++  GC+  CTFC+VP  RG E 
Sbjct: 138 RHND---EAQVEIVDALEAFPSVLPA-KRESAYAGWVSVSVGCNNTCTFCIVPSLRGKEE 193

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAW----RGKGLDGEKCTFSDLLYSLSEIKG 259
            R    ++ E + L+D GV E+TLLGQNVNA+        L  ++  FS LL  + +I+G
Sbjct: 194 DRRPGDILAEVQALVDQGVSEVTLLGQNVNAYGVNFADPDLPRDRFAFSKLLREVGKIEG 253

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           L RLR+T+ HP + +  +I A  +   + P LH+P+QSGSD++LK M R +   ++  I+
Sbjct: 254 LERLRFTSPHPAEFTSDVIDAMAETPAVCPQLHMPLQSGSDKVLKDMRRSYRTKKFLGIL 313

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
           D +R   P  AI++D IVGFPGET++DF AT+++V +  +A AF+F+YSPR GTP + M 
Sbjct: 314 DEVREKMPHAAITTDIIVGFPGETEEDFEATLEVVRRARFASAFTFQYSPRPGTPAAEME 373

Query: 380 EQVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG----KLVGRS 432
            Q+ + V   + ERL+ LQ  ++ ++   N   VG  +E+L++  G  K     +L GR+
Sbjct: 374 NQIPKEVVQERFERLVALQDSIQAEE---NAKLVGTDVELLVQAEGGRKSAETHRLTGRA 430


>gi|320450914|ref|YP_004203010.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Thermus scotoductus
           SA-01]
 gi|320151083|gb|ADW22461.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Thermus scotoductus
           SA-01]
          Length = 440

 Score =  291 bits (745), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 168/443 (37%), Positives = 257/443 (58%), Gaps = 17/443 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R  + ++GCQMN YDS  +     S G+E V+S+++AD +++NTC +R K  EKV S LG
Sbjct: 2   RAHIITFGCQMNEYDSHLVASELVSLGWELVDSVEEADFVLVNTCAVRGKPVEKVRSLLG 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           ++R  K+ R      LL+ + GC+AQ +  + + R   V+V++GP     LPE L   + 
Sbjct: 62  QLRKEKDRR-----GLLIGLMGCLAQLDEGQQMARKFGVDVLLGPGALTSLPEAL---KG 113

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            +R  D  +  ED  + +     G      ++A +TI  GC+  CT+C+VP TRG E+SR
Sbjct: 114 NQRFWDLTFK-EDLLDYIPPPPRG-----ALSAHVTIIRGCNHHCTYCIVPTTRGPEVSR 167

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
               ++ E   L   GV E+TLLGQNVN++ GK   G   +F++LL  + ++ G+ R+R+
Sbjct: 168 HPDLILKEIETLKKAGVVEVTLLGQNVNSY-GKDQPGFP-SFAELLRMVGQM-GIPRVRF 224

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
            TSHP + +D +I+A  +   +  Y+HLPVQSGSDR+L+ M R +   +Y + I RIR +
Sbjct: 225 LTSHPVNFTDDIIEAIAETPAITRYIHLPVQSGSDRVLRRMAREYRRAQYLERIRRIREI 284

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            PD  +S+D IVGFPGET++DF+ T+ L D++GY QA+ F YSPR GTP     + +   
Sbjct: 285 LPDAVLSTDIIVGFPGETEEDFQETLSLYDEVGYDQAYMFIYSPRPGTPAYKHFQDLPRE 344

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445
           VK ERL  L +K +E     N   VG+ +EVL+    KE+G + G       V++ +   
Sbjct: 345 VKVERLQRLIEKQKEWSYRRNLEWVGKTVEVLVRGVAKEEGYVQGHDRGNHPVLVPAHQA 404

Query: 446 NIGDIIKVRITDVKISTLYGELV 468
               + +V I       L+GE+V
Sbjct: 405 PTPGLYQVEIKQATPHLLFGEVV 427


>gi|291301633|ref|YP_003512911.1| RNA modification enzyme, MiaB family [Stackebrandtia nassauensis
           DSM 44728]
 gi|290570853|gb|ADD43818.1| RNA modification enzyme, MiaB family [Stackebrandtia nassauensis
           DSM 44728]
          Length = 495

 Score =  291 bits (745), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 168/442 (38%), Positives = 259/442 (58%), Gaps = 28/442 (6%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           + VK+YGCQMNV+DS R+  +    GY       +AD++V NTC +RE A  ++Y  LG 
Sbjct: 10  YAVKTYGCQMNVHDSERIGGLLEDAGYVPAADTGEADVVVFNTCAVRENADNRLYGNLGH 69

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           +R  K ++      + + V GC+AQ +  +I++++P V+VV G      LP LLERAR  
Sbjct: 70  LRPQKVAKPG----MQIAVGGCLAQKDRGDIVKKAPWVDVVFGTHNIGSLPVLLERARHN 125

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVT--AFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            R       VE   E L +       KR  T   +++I  GC+  CTFC+VP  RG E  
Sbjct: 126 ARA-----EVE-ILEALEVFPSTLPTKRESTYAGWVSISVGCNNTCTFCIVPSLRGKEKD 179

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRL 263
           R   +++ E R L+D GV E+TLLGQNVN++   G++ G+K  F  LL +  EI GL R+
Sbjct: 180 RRPGEILAEVRALVDEGVSEVTLLGQNVNSY---GVEFGDKLAFGKLLRACGEIDGLERV 236

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+T+ HP+D +D +I A  +   +   LH+P+QSGSD +LK M R +   +Y  IID++R
Sbjct: 237 RFTSPHPKDFTDDVIDAMAETPNVCHQLHMPLQSGSDTVLKGMRRSYRREKYLGIIDKVR 296

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           +  PD AI++D IVGFPGET+ DF  T+D+V K  ++ AF+F+YS R GTP + M  QV 
Sbjct: 297 AAMPDAAITTDIIVGFPGETEADFEDTLDVVRKARFSGAFTFQYSIRPGTPAATMDGQVP 356

Query: 384 ENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIE----KHGKEKGKLVGRSPWLQ 436
           ++V   + ERL+ +Q+++   +   N   +G+ +EVL+     +     G++ GR+   +
Sbjct: 357 KHVVQERYERLIAVQEEISWDE---NKKQIGREVEVLVAVGEGRKDAATGRMSGRARDGR 413

Query: 437 SVVLNSKNHNI--GDIIKVRIT 456
            V  ++   ++  GD++   IT
Sbjct: 414 LVHFDATGFDVRPGDVVTTTIT 435


>gi|333029498|ref|ZP_08457559.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Bacteroides coprosuis DSM 18011]
 gi|332740095|gb|EGJ70577.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Bacteroides coprosuis DSM 18011]
          Length = 459

 Score =  291 bits (745), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 171/452 (37%), Positives = 263/452 (58%), Gaps = 20/452 (4%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           I  ++  +++YGCQMNV DS  +  +    GYE    +++AD + LNTC IRE A  K+Y
Sbjct: 16  IAEKKLLIETYGCQMNVADSEVVASVMKMAGYEITEDLEEADAVFLNTCSIRENAELKIY 75

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             L    ++K  R K+G  L++ V GC+A+   + ++      N+VVGP  Y  LP+L+ 
Sbjct: 76  KRLDYFYSMKR-RKKKG--LIIGVLGCMAERVKQSLIEEHH-ANLVVGPDAYLSLPDLIA 131

Query: 142 RARFGKRVVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
               G++ +D + S  + ++ +  S + G       ++ F++I  GC+ FCT+C+VPYTR
Sbjct: 132 SVEAGEKAIDIELSTTETYKDIIPSRLCGT-----AISGFVSIMRGCNNFCTYCIVPYTR 186

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIK 258
           G E SR +  +++E   LI  G  EITLLGQNVN++     + GE   F  LL  ++   
Sbjct: 187 GRERSREVESILNEVDDLIKKGYKEITLLGQNVNSYHFINKETGEDIQFHHLLEIVATHA 246

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
              R+R++TSHP+DMSD  ++       +  ++HLPVQSGS RILK MNR++T   Y   
Sbjct: 247 PSTRIRFSTSHPKDMSDDTLRVIAKTPNICKHIHLPVQSGSSRILKLMNRKYTREWYLDR 306

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-N 377
           I+ I+ + P+  I++D   GF  ET++D + ++ L+++  +  AF FKYS R GT  S N
Sbjct: 307 IEAIKRIIPNCGITTDIFCGFHSETEEDHQMSLSLMEQCQFDYAFMFKYSERPGTYASKN 366

Query: 378 MLEQVDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSP 433
           + + V E +K  RL   + LQ KL    ++ N A +GQ  EVL+E    K K +L GRS 
Sbjct: 367 LPDDVPEEIKTRRLNEIIELQSKL---SLASNKADIGQTYEVLVEGVSKKSKDQLFGRSQ 423

Query: 434 WLQSVVLNSKNHNIGDIIKVRITDVKISTLYG 465
             + V+ + KNH IGD ++VRI +V  +TL G
Sbjct: 424 QNKVVIFDRKNHRIGDYVQVRIDEVSSATLIG 455


>gi|289550913|ref|YP_003471817.1| tRNA-i(6)A37 methylthiotransferase [Staphylococcus lugdunensis
           HKU09-01]
 gi|315658416|ref|ZP_07911288.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus
           lugdunensis M23590]
 gi|289180445|gb|ADC87690.1| tRNA-i(6)A37 methylthiotransferase [Staphylococcus lugdunensis
           HKU09-01]
 gi|315496745|gb|EFU85068.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus
           lugdunensis M23590]
          Length = 514

 Score =  291 bits (745), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 163/446 (36%), Positives = 263/446 (58%), Gaps = 15/446 (3%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           F +K+YGCQMN +D+  M  +  + GY+  + + +AD+I++NTC IRE A  KV+S +G 
Sbjct: 70  FLIKTYGCQMNAHDTEVMAGILEALGYQSTSDIQEADVILINTCAIRENAENKVFSEIGN 129

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           +++LK +R     D L+ V GC++Q E    +IL+    V+++ G    ++LPE+LE A 
Sbjct: 130 LKHLKKNR----PDCLIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHKLPEILEEAY 185

Query: 145 FGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             K +V   +S E D  E L  V     R+  + A++ I  GCDKFCT+C+VP+TRG E 
Sbjct: 186 MSKAMVVDVWSKEGDIIENLPKV-----REGNIKAWVNIMYGCDKFCTYCIVPFTRGKER 240

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR    ++ E ++L   G  EITLLGQNVN++ GK ++       DLL ++S+I  + R+
Sbjct: 241 SRRPEDIIAEVKELAREGYQEITLLGQNVNSY-GKDIEDIDYELGDLLEAISKI-DIPRV 298

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+TTSHP D +D +I+       ++P++HLPVQSG++ +LK M R++T   Y +++ +I+
Sbjct: 299 RFTTSHPWDFTDRMIQVIAQGGNIVPHIHLPVQSGNNAVLKIMGRKYTRESYLELVSKIK 358

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           +  P+IA+++D IVG+P ET+D F  T+ L D++ +  A+++ YS R GTP + M + V 
Sbjct: 359 AAIPNIALTTDIIVGYPNETEDQFEETLTLYDEVAFEHAYTYLYSQRDGTPAAKMKDNVP 418

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVLNS 442
             VK +RL  L +K+ +             + VL E   K+    L G +   + V    
Sbjct: 419 LEVKKQRLQRLNQKVGQYSQQAMSHYENTTVTVLCEGTSKKDDTVLAGYTGKNKLVNFKG 478

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
               IG +++V+I + K  +L G  V
Sbjct: 479 PKEAIGQLVEVKIDEAKQYSLNGTFV 504


>gi|194335519|ref|YP_002017313.1| RNA modification enzyme, MiaB family [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|229890587|sp|B4SCB6|MIAB_PELPB RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|194307996|gb|ACF42696.1| RNA modification enzyme, MiaB family [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 440

 Score =  291 bits (745), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 164/448 (36%), Positives = 261/448 (58%), Gaps = 22/448 (4%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           F++ ++GCQMN  DS  +  +    GY    S D A +I+LNTC +RE A +++  +L  
Sbjct: 9   FYIHTFGCQMNQADSATITSLLQQAGYVAAESEDRAGIILLNTCAVRENAVDRIEHYLQH 68

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           ++ LK    K    L+V + GC+ Q + EE+   SP ++++ GP TY  LP+L+E+AR G
Sbjct: 69  LQGLK----KRDKRLIVGILGCIPQHQREEMFATSPAIDLLAGPDTYRTLPQLIEQARSG 124

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
            +    D++V + +E +  V     R+  ++AF+ +  GC+  C +CVVP+TRG E S  
Sbjct: 125 AKPFSLDFNVAETYEGIDPV-----RQGSISAFVPVMRGCNNMCAYCVVPFTRGRERSHP 179

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK-CTFSDLLYSLSEIKGLVRLRY 265
              V+ E +KL+ +G  EITLLGQNVN++     D E+   F+ LL ++S      R+R+
Sbjct: 180 FRAVMGEVQKLVASGYSEITLLGQNVNSYD----DPEQGVNFAALLDAVSCAAPQARVRF 235

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
           TTSHP+D+S  L++   +   +  ++HLPVQSGS   L  MNR HT  EY + I  IRS+
Sbjct: 236 TTSHPKDISGELVRTIANRPNICNHIHLPVQSGSTATLGRMNRGHTIEEYLEKIALIRSL 295

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT-PGSNMLEQVDE 384
            P + +S+D I GF GE ++D +A+++L+  + +  A+ F YS R GT     +++ V E
Sbjct: 296 LPGVTLSTDIIAGFCGEQEEDHQASLELLSTLRFDSAYMFYYSTRPGTFAARTLVDDVPE 355

Query: 385 NVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLVGRSPWLQSVVL 440
            VK  RL   + LQ  +  +   F  A +G ++EVL E   K    +L+GR+P  ++VV 
Sbjct: 356 VVKKRRLQEIIDLQNTISGEL--FQQA-IGSVVEVLAESESKRSAEQLMGRTPGNRAVVF 412

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
           + + +  GD+++V IT    +TL G  V
Sbjct: 413 DREGYRPGDLVRVLITAATSATLTGRPV 440


>gi|86609143|ref|YP_477905.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Synechococcus
           sp. JA-2-3B'a(2-13)]
 gi|123502140|sp|Q2JKY0|MIAB_SYNJB RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|86557685|gb|ABD02642.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 444

 Score =  291 bits (744), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 168/446 (37%), Positives = 257/446 (57%), Gaps = 16/446 (3%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           ++  ++GCQMN  D+ RM  +  S GY        ADL++ NTC IR+ A +KVYS+LG 
Sbjct: 6   YYTITFGCQMNRADTERMAGILESLGYVATEDELQADLVLYNTCTIRDNAEQKVYSYLG- 64

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
              ++  R ++   + ++VAGCVAQ EGE++LRR P +++V+GPQ   RL +LL +   G
Sbjct: 65  ---IQAQRKRKNPAIKLIVAGCVAQQEGEKLLRRVPELDLVMGPQYVNRLGDLLAQVEAG 121

Query: 147 KRVVDTD-YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            +VV TD   + +   +         R   VTA++ +  GC++ CT+C+VP  RG E SR
Sbjct: 122 NQVVATDPVEIPEDITKP-------RRDSQVTAWINVIYGCNERCTYCIVPRVRGQEQSR 174

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
               +  E   +   G  E+TLLGQN++A+ G+ LD  K   + LL  +  ++G+ R+R+
Sbjct: 175 QPQAIRAEIEDVARAGYREVTLLGQNIDAY-GRDLD-PKTNLASLLRFVHSVEGIERIRF 232

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
            TSHPR  ++ LI    +L  +  + H+P Q+GS+ +LK M R +T   YRQII  IR  
Sbjct: 233 ATSHPRYFTEELITTCAELPKVCEHFHIPFQAGSNEVLKRMRRGYTHERYRQIIQLIRQY 292

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P+ AIS+D IVGFPGET+  F+ T+ LV  IG+ Q  +  YSPR GTP +   +QV E 
Sbjct: 293 MPEAAISADAIVGFPGETEAQFQETLQLVQDIGFDQVNTAAYSPRPGTPAAEWPDQVPEE 352

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSPWLQSVVLNSKN 444
            K++RL  L + + E   + +   +GQ+ EVL+E  + K   + +GR+   + V      
Sbjct: 353 EKSDRLQRLNRLVAEVAAARSARLLGQVQEVLVEGPNPKNPRQAMGRTRGNRLVFFEGDP 412

Query: 445 HNI-GDIIKVRITDVKISTLYGELVV 469
             + G ++ VRIT  +  +L GE V 
Sbjct: 413 EELQGSLVPVRITATRAFSLTGEAVT 438


>gi|257467848|ref|ZP_05631944.1| MIAB protein [Fusobacterium ulcerans ATCC 49185]
 gi|317062137|ref|ZP_07926622.1| tRNA 2-methylthioadenosine synthase [Fusobacterium ulcerans ATCC
           49185]
 gi|313687813|gb|EFS24648.1| tRNA 2-methylthioadenosine synthase [Fusobacterium ulcerans ATCC
           49185]
          Length = 436

 Score =  291 bits (744), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 160/441 (36%), Positives = 265/441 (60%), Gaps = 16/441 (3%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           +YGCQMNV +S +++ +F + GYE   +++++D I LNTC +RE AA ++Y  LG ++++
Sbjct: 8   TYGCQMNVNESAKIKKIFQNIGYEITENIEESDAIFLNTCTVREGAATQIYGKLGELKHI 67

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE--RARFGKR 148
           K  R       ++ + GC AQ +G+E+L++ P +++++G Q   R+P+ ++    +  K 
Sbjct: 68  KERR-----GSIIGITGCFAQEQGKELLKKFPQIDIIMGNQNIGRIPQAIDDIEHKTNKH 122

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           V+ TD   ED  E    +D  ++ K+  TA ++I  GC+ FCT+C+VPY RG E S  L 
Sbjct: 123 VIYTD--CED--ELPPRLDADFDSKK--TASISITYGCNNFCTYCIVPYVRGRERSVPLD 176

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
           +++ + ++  + G  EI LLGQNVN++     +G+   F+ LL  + +++G   +R+ + 
Sbjct: 177 EIIHDVKQYAEKGYKEIILLGQNVNSYGKDFKNGD--NFAKLLEEICKVEGDFLVRFISP 234

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
           HPRD SD +I      D +   LHLP+QSGS RILK MNR +T  +Y  + ++I+   P 
Sbjct: 235 HPRDFSDEVIDVIAKNDKIAKSLHLPLQSGSTRILKMMNRGYTKEQYIALAEKIKERIPG 294

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           +A+++D IVGFPGET++DF  T+D+V +I +  +F F YS R GT  + M EQ+D  VK 
Sbjct: 295 VALTADIIVGFPGETEEDFLDTLDVVKRIQFENSFMFMYSIRQGTKAAEMDEQIDSEVKK 354

Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLNSKNHNI 447
           ERL  L +      ++ ++  +G+ + +L+E    K K  L GR+   + V+        
Sbjct: 355 ERLQRLIEVQNSCSLAESETYMGKTVRILVEGESRKNKDVLTGRTSTNKIVLFKGDKALE 414

Query: 448 GDIIKVRITDVKISTLYGELV 468
           G  + V+I D K  TLYG++V
Sbjct: 415 GTFVNVKIYDCKTWTLYGDIV 435


>gi|229490909|ref|ZP_04384744.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Rhodococcus erythropolis
           SK121]
 gi|229322299|gb|EEN88085.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Rhodococcus erythropolis
           SK121]
          Length = 521

 Score =  291 bits (744), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 148/396 (37%), Positives = 232/396 (58%), Gaps = 12/396 (3%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           + V++YGCQMNV+DS R+  +    GY +  +  D DL+V NTC +RE A  K+Y  L +
Sbjct: 28  YEVRTYGCQMNVHDSERLSGLLEDAGYSKAETGTDPDLVVFNTCAVRENADNKLYGNLSQ 87

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           +   K +      D+ + V GC+AQ + + +++++P V+VV G      LP LL+RAR  
Sbjct: 88  LAPNKEANP----DMQIAVGGCLAQKDRDTVVKKAPFVDVVFGTHNIGSLPALLDRARHN 143

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           +R    +  + D  E          R+     +++I  GC+  CTFC+VP  RG E+ R 
Sbjct: 144 QRA---EVEILDALEAFPSTLPA-KRESAYAGWVSISVGCNNTCTFCIVPALRGKEVDRR 199

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE----KCTFSDLLYSLSEIKGLVR 262
              ++ E + L+D GV E+TLLGQNVNA+     D E    +  F+ LL +   I GL R
Sbjct: 200 PGDILAEVQALVDEGVSEVTLLGQNVNAYGVSFADPEQPRDRGAFASLLKACGHIDGLER 259

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+T+ HP + +D +I+A      + P LH+P+QSGSD++LK+M R +   +Y  II+++
Sbjct: 260 VRFTSPHPAEFTDDVIEAMATTPNVCPQLHMPLQSGSDKVLKAMKRSYRKSKYLGIIEKV 319

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+  P  AI++D IVGFPGET++DF  T+D+V K  ++ A++F+YS R GTP + M +Q+
Sbjct: 320 RAAMPHAAITTDIIVGFPGETEEDFEETLDVVRKARFSNAYTFQYSKRPGTPAAEMADQL 379

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI 418
            + V  ER + L     E  +  N   VG  +E+L+
Sbjct: 380 PKEVVQERYMRLLAVQEEVNIEENRKLVGTEVELLV 415


>gi|296327837|ref|ZP_06870374.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Fusobacterium nucleatum
           subsp. nucleatum ATCC 23726]
 gi|296155051|gb|EFG95831.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Fusobacterium nucleatum
           subsp. nucleatum ATCC 23726]
          Length = 435

 Score =  291 bits (744), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 160/441 (36%), Positives = 265/441 (60%), Gaps = 16/441 (3%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           +YGCQMNV +S +++ +F + GY+    +D+AD + LNTC +RE AA +++  LG ++ L
Sbjct: 8   TYGCQMNVNESAKIKKIFQNLGYDVTEEIDNADAVFLNTCTVREGAATQIFGKLGELKAL 67

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
           K  R       ++ V GC AQ +GEE++++ PI+++V+G Q   R+P+ +E+    +   
Sbjct: 68  KEKR-----GTIIGVTGCFAQEQGEELVKKFPIIDIVMGNQNIGRIPQAIEKIENNESTH 122

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
           +     ED+       + G ++    TA ++I  GC+ FCTFC+VPY RG E S  L ++
Sbjct: 123 EVYTDNEDELPPRLDAEFGSDQ----TASISITYGCNNFCTFCIVPYVRGRERSVPLEEI 178

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270
           V +  + +  G  EI LLGQNVN++     +G+   F+ LL  + +++G   +R+ + HP
Sbjct: 179 VKDVEQYVKKGAKEIVLLGQNVNSYGKDFKNGD--NFAKLLDEICKVEGDYIVRFVSPHP 236

Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330
           RD +D +I+     + +   LHLP+QSGS +ILK M R +T  +Y  ++D+I+S  P +A
Sbjct: 237 RDFTDDVIEVIAKNEKISKCLHLPLQSGSSQILKKMRRGYTKEKYLALVDKIKSKIPGVA 296

Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER 390
           +++D IVGFPGET++DF  T+D+V K+ +  ++ F YS R GT  + M  Q++E+VK ER
Sbjct: 297 LTADIIVGFPGETEEDFLDTIDVVQKVSFDNSYMFMYSIRKGTKAATMDNQIEESVKKER 356

Query: 391 LLCLQKKLREQQVSFNDAC--VGQIIEVLIEKHGKE-KGKLVGRSPWLQSVVLNSKNHNI 447
           L  L +   + + SF ++    G+I++VL+E   K+ K  L GR+   + V+        
Sbjct: 357 LQRLME--VQNKCSFYESSKYKGRIVKVLVEGPSKKNKEVLSGRTSTNKIVLFRGNLALK 414

Query: 448 GDIIKVRITDVKISTLYGELV 468
           G  + V+I + K  TLYGE+V
Sbjct: 415 GQFVNVKINECKTWTLYGEIV 435


>gi|329121178|ref|ZP_08249806.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Dialister micraerophilus
           DSM 19965]
 gi|327470260|gb|EGF15721.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Dialister micraerophilus
           DSM 19965]
          Length = 447

 Score =  291 bits (744), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 157/417 (37%), Positives = 255/417 (61%), Gaps = 25/417 (5%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++++  +YGCQMN  D+ R+     + GY   N MD+AD+++LNTC IR+ A EKVY  +
Sbjct: 9   KKYYTITYGCQMNESDTERINGQLEALGYTPANVMDEADIVILNTCSIRQNAEEKVYGKI 68

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-ERA 143
           G ++ LK    K+G  +L+ +AGC+AQ   ++++ R PI++ V+GP   + L +++  R 
Sbjct: 69  GEVKKLKEK--KDG--VLLGIAGCMAQESKKKLIERMPIIDFVIGPYHIHDLKDIVTARN 124

Query: 144 RFGKRVVDTDYS---VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
             G  VV T  +   V+D  E  +      +RK  + A++ I +GC+KFCT+C+VPY RG
Sbjct: 125 AEGAHVVLTKMNPQRVKDYSELTA------SRKSNIFAWVPIMQGCNKFCTYCIVPYVRG 178

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT-FSDLLYSLSEIKG 259
            E SR +S V+ E ++L  +G  EITLLGQNVN++   GLD    T FSDL+ +L  + G
Sbjct: 179 RETSRPISDVLKEVKQLAKDGYKEITLLGQNVNSY---GLDFRNGTDFSDLIKALDTVDG 235

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           + R+RY TSHPRDM+  ++ A  +   ++  +HLPVQ GS+ +LK MNR +T   Y ++ 
Sbjct: 236 IERIRYMTSHPRDMTFEMVDAIAESPKVVTQMHLPVQHGSNEMLKKMNRGYTIEHYFELF 295

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
           D ++   PD+ +++D I GFPGET++  + T++++ +  +  A++F YSPR GTP + M 
Sbjct: 296 DYVKKKIPDVVVTTDLITGFPGETEEMHKETLEILKRARFDSAYTFIYSPRKGTPAARMT 355

Query: 380 EQVDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRS 432
           + V  +++  RL   + LQ K+    +  N    G+  +V++E   K+ K    GR+
Sbjct: 356 DTVPSDIQHRRLNEIMELQNKI---SLEINKEMEGKTFQVIVEGPTKQNKDNWFGRT 409


>gi|28572773|ref|NP_789553.1| hypothetical protein TW627 [Tropheryma whipplei TW08/27]
 gi|81629788|sp|Q83HG3|MIAB_TROW8 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|28410906|emb|CAD67291.1| conserved hypothetical protein [Tropheryma whipplei TW08/27]
          Length = 470

 Score =  291 bits (744), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 161/416 (38%), Positives = 253/416 (60%), Gaps = 25/416 (6%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           + V++YGCQMNV+DS R+  +   +GY +  S DDAD++VLNTC +RE A  + Y  LG+
Sbjct: 3   YTVRTYGCQMNVHDSERIAGVLEDEGYVKSGS-DDADVVVLNTCAVRENADNRFYGNLGQ 61

Query: 87  IRNLKNS-RIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           +   KN+ RI++     + V GC+AQ +  +I  ++P V+VV G      LP LL R+R 
Sbjct: 62  LLQKKNNGRIRQ-----IAVGGCLAQKDRHKIFEKAPWVDVVFGTHNLGSLPALLRRSRH 116

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            K     +  ++D  E          R+   +A+++I  GC+  CTFC+VP  RG E  R
Sbjct: 117 NK---TAEIEIKDFLETFP-SSLPVRRESNYSAWVSISVGCNNTCTFCIVPSLRGKERDR 172

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLR 264
               ++ E   L+  GV E+TLLGQNVN +   G++ G++  F+ LL     I+GL RL+
Sbjct: 173 RPGDILAEISALVSEGVLEVTLLGQNVNTY---GVEFGDRSAFASLLRKAGAIEGLERLK 229

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +T+ HP   +  +I A  D   ++P LH+P+QSGSDRIL++M R + A ++ +II   R+
Sbjct: 230 FTSPHPAAFTSDVIDAMHDTQAVLPQLHMPLQSGSDRILRAMRRSYRAGKFLKIISEARN 289

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             P+IAI++D IVGFPGET++DF+ T++LV ++ +A AF+F+YSPR GTP ++M  Q+  
Sbjct: 290 KIPNIAITTDIIVGFPGETEEDFQDTLNLVAEVRFASAFTFQYSPRPGTPAASMPNQIPG 349

Query: 385 NVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL----VGRSP 433
           ++  E   RLL LQ ++  ++   N   +G+ +E+L+   G++   L     GR+P
Sbjct: 350 DIVQERYDRLLDLQNRIALEE---NRKLIGKEVELLVTVGGRKDSMLDNRYTGRTP 402


>gi|239917253|ref|YP_002956811.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Micrococcus luteus NCTC
           2665]
 gi|281414269|ref|ZP_06246011.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Micrococcus luteus NCTC
           2665]
 gi|239838460|gb|ACS30257.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Micrococcus luteus NCTC
           2665]
          Length = 515

 Score =  290 bits (743), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 164/446 (36%), Positives = 259/446 (58%), Gaps = 30/446 (6%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           + V+++GCQMNV+DS R+  +  S GY  V     ADL+V NTC +RE A  ++Y  LG 
Sbjct: 28  YEVRTFGCQMNVHDSERISGLLESTGYAPVADNAQADLVVFNTCAVRENADNRLYGNLGN 87

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           +R +K++       + + V GC+AQ +   I RR+P V+VV G      LP LLER+R  
Sbjct: 88  LRAVKDAHP----GMQIAVGGCLAQKDQAAIQRRAPWVDVVFGTHNIGSLPVLLERSRH- 142

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVT--AFLTIQEGCDKFCTFCVVPYTRGIEIS 204
               + +  +E   E L +       KR  T   +++I  GC+  CTFC+VP  RG E  
Sbjct: 143 ----NAEAEIE-ILESLEVFPSTLPTKRDSTHSGWVSISVGCNNTCTFCIVPSLRGKEKD 197

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRL 263
           R   +++ E + L+  G  E+TLLGQNVN +   G++ G++  F+ LL +  EI+GL R+
Sbjct: 198 RRPGEILAEVQALVGAGAVEVTLLGQNVNTY---GVEFGDRGAFAKLLRACGEIEGLERV 254

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+T+ HP   +D +I A  +   +MP LH+P+QSGSD++LK M R + + ++ +I++++R
Sbjct: 255 RFTSPHPAAFTDDVIDAMAETPNVMPQLHMPLQSGSDKVLKDMRRSYRSAKFLRILEKVR 314

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              P  AI++D IVGFPGET++DF  TM +V+   ++ AF+F+YS R GTP   M  QV 
Sbjct: 315 ERIPHAAITTDIIVGFPGETEEDFAETMRVVEASRFSSAFTFQYSIRPGTPAGEMEHQVP 374

Query: 384 ENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIE----KHGKEKGKLVGRSPWLQ 436
           + V   + ERL+ LQ ++  ++++     VG   E+L+         E+G+L GR+P  +
Sbjct: 375 KAVVQERFERLVALQDRISAEEMA---TLVGTRQELLVTADSGSKAAERGRLSGRAPDNR 431

Query: 437 ----SVVLNSKNHNIGDIIKVRITDV 458
               SV   ++    GD + V +T+ 
Sbjct: 432 LVHFSVPAGAETPRPGDFVTVTVTEA 457


>gi|313892531|ref|ZP_07826118.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Dialister microaerophilus
           UPII 345-E]
 gi|313118928|gb|EFR42133.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Dialister microaerophilus
           UPII 345-E]
          Length = 447

 Score =  290 bits (743), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 157/417 (37%), Positives = 255/417 (61%), Gaps = 25/417 (5%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++++  +YGCQMN  D+ R+     + GY   N MD+AD+++LNTC IR+ A EKVY  +
Sbjct: 9   KKYYTITYGCQMNESDTERINGQLEALGYTPANVMDEADIVILNTCSIRQNAEEKVYGKI 68

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-ERA 143
           G ++ LK    K+G  +L+ +AGC+AQ   ++++ R PI++ V+GP   + L +++  R 
Sbjct: 69  GEVKKLKEK--KDG--VLLGIAGCMAQESKKKLIERMPIIDFVIGPYHIHDLKDIVTARN 124

Query: 144 RFGKRVVDTDYS---VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
             G  VV T  +   V+D  E  +      +RK  + A++ I +GC+KFCT+C+VPY RG
Sbjct: 125 AEGAHVVLTKMNPQRVKDYSELTA------SRKSNIFAWVPIMQGCNKFCTYCIVPYVRG 178

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT-FSDLLYSLSEIKG 259
            E SR +S V+ E ++L  +G  EITLLGQNVN++   GLD    T FSDL+ +L  + G
Sbjct: 179 RETSRPISDVLKEVKQLAKDGYKEITLLGQNVNSY---GLDFRNGTDFSDLIRALDTVDG 235

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           + R+RY TSHPRDM+  ++ A  +   ++  +HLPVQ GS+ +LK MNR +T   Y ++ 
Sbjct: 236 IERIRYMTSHPRDMTFEMVDAIAESPKVVTQMHLPVQHGSNEMLKKMNRGYTIEHYFELF 295

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
           D ++   PD+ +++D I GFPGET++  + T++++ +  +  A++F YSPR GTP + M 
Sbjct: 296 DYVKKKIPDVVVTTDLITGFPGETEEMHKETLEILKRARFDSAYTFIYSPRKGTPAARMT 355

Query: 380 EQVDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRS 432
           + V  +++  RL   + LQ K+    +  N    G+  +V++E   K+ K    GR+
Sbjct: 356 DTVPSDIQHRRLNEIMELQNKI---SLEINKEMEGKTFQVIVEGPTKQNKDNWFGRT 409


>gi|19703810|ref|NP_603372.1| MIAB protein [Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
 gi|81484620|sp|Q8RG43|MIAB_FUSNN RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|19713958|gb|AAL94671.1| MIAB protein [Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
          Length = 435

 Score =  290 bits (743), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 161/441 (36%), Positives = 264/441 (59%), Gaps = 16/441 (3%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           +YGCQMNV +S +++ +F + GY+    +D+AD + LNTC +RE AA +++  LG ++ L
Sbjct: 8   TYGCQMNVNESAKIKKIFQNLGYDVTEEIDNADAVFLNTCTVREGAATQIFGKLGELKAL 67

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
           K  R       ++ V GC AQ +GEE++++ PI+++V+G Q   R+P+ +E+    +   
Sbjct: 68  KEKR-----GTIIGVTGCFAQEQGEELVKKFPIIDIVMGNQNIGRIPQAIEKIENNESTH 122

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
           +     ED+       + G ++    TA ++I  GC+ FCTFC+VPY RG E S  L ++
Sbjct: 123 EVYTDNEDELPPRLDAEFGSDQ----TASISITYGCNNFCTFCIVPYVRGRERSVPLEEI 178

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270
           V +  + +  G  EI LLGQNVN++     +G+   F+ LL  + +++G   +R+ + HP
Sbjct: 179 VKDVEQYVKKGAKEIVLLGQNVNSYGKDFKNGD--NFAKLLDEICKVEGDYIVRFVSPHP 236

Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330
           RD +D +I+       +   LHLP+QSGS +ILK M R +T  +Y  ++D+I+S  P +A
Sbjct: 237 RDFTDDVIEVIAKNKKISKCLHLPLQSGSSQILKKMRRGYTKEKYLALVDKIKSKIPGVA 296

Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER 390
           +++D IVGFPGET++DF  T+D+V K+ +  ++ F YS R GT  + M  Q++E+VK ER
Sbjct: 297 LTADIIVGFPGETEEDFLDTIDVVQKVSFDNSYMFMYSIRKGTKAATMDNQIEESVKKER 356

Query: 391 LLCLQKKLREQQVSFNDAC--VGQIIEVLIEKHGKE-KGKLVGRSPWLQSVVLNSKNHNI 447
           L  L +   + + SF ++    G+I++VL+E   K+ K  L GR+   + V+        
Sbjct: 357 LQRLME--VQNKCSFYESSKYKGRIVKVLVEGPSKKNKEVLSGRTSTNKIVLFRGNLALK 414

Query: 448 GDIIKVRITDVKISTLYGELV 468
           G  I V+I + K  TLYGE+V
Sbjct: 415 GQFINVKINECKTWTLYGEIV 435


>gi|229890694|sp|A9KMU9|MIAB_CLOPH RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
          Length = 456

 Score =  290 bits (743), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 164/458 (35%), Positives = 265/458 (57%), Gaps = 14/458 (3%)

Query: 14  VSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIR 73
           V ++ D+   P  F V+++GCQMN  DS ++  +  + GY   +S ++AD +V NTC +R
Sbjct: 8   VKKVADELGRPLTFNVQTFGCQMNAKDSEKLAGILETIGYVESDS-EEADFVVYNTCTVR 66

Query: 74  EKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQ 131
           E A  +VY  +G + NLK    K+   + + + GC+ Q     E+I +    V++V G  
Sbjct: 67  ENANTRVYGRIGFLGNLK----KKNPHMRIALCGCMMQESHVVEKIKKSYRFVDIVFGTH 122

Query: 132 TYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCT 191
             ++L EL+      K++V   +   DK       +  Y  K GV     I  GC+ FC+
Sbjct: 123 NIFKLAELIYARHTTKKMVIDIWKETDKIVEELPSEQKYKFKAGVN----IMYGCNNFCS 178

Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLL 251
           +C+VPY RG E SR+   ++ E ++L+  GV E+ LLGQNVN++ GK LD E  +F+ LL
Sbjct: 179 YCIVPYVRGRERSRNPEDIIKEIKQLVSKGVVEVMLLGQNVNSY-GKTLD-EPVSFAQLL 236

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
             + +++GL R+R+ T HP+D+S+ +I+   +   +  ++HLPVQSGS  +L  MNR++T
Sbjct: 237 QMVEQVEGLKRIRFMTPHPKDLSNDVIEVMKNSKKICNHIHLPVQSGSTELLMKMNRKYT 296

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
             +Y  ++DRI+   P+I++++D IVGFPGET++DF  T+D+V K+GY  A++F YS R 
Sbjct: 297 KEDYLNLVDRIKMAMPNISLTTDIIVGFPGETEEDFLDTLDVVRKVGYDSAYTFIYSKRS 356

Query: 372 GTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-G 430
           GTP + M  Q+ E V  ER   L   +RE     +    G+I EVL+E+  ++   L+ G
Sbjct: 357 GTPAATMENQIPEEVANERFQRLLTTIRESSSKISKDDEGKIAEVLVEEVNEQDNSLMTG 416

Query: 431 RSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           R      V        IG+I+ V++++ K     GE++
Sbjct: 417 RLSNNVLVHFKGTKELIGNIVSVKLSECKGFYYMGEMM 454


>gi|46199244|ref|YP_004911.1| hypothetical protein TTC0942 [Thermus thermophilus HB27]
 gi|81405796|sp|Q72J39|MIAB_THET2 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|46196869|gb|AAS81284.1| conserved hypothetical protein [Thermus thermophilus HB27]
          Length = 465

 Score =  290 bits (743), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 169/444 (38%), Positives = 258/444 (58%), Gaps = 19/444 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R  + +YGCQMN YDS  +     S G+E V+S+++AD +++NTC +R K  EKV S LG
Sbjct: 27  RAHIITYGCQMNEYDSHLVASELVSLGWELVDSVEEADFVLVNTCAVRGKPVEKVRSLLG 86

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQA-EGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           ++R  K  R      LL+ + GC+AQ  EG+++ ++   V+V++GP     LPE L   +
Sbjct: 87  QLRKEKERR-----GLLIGMMGCLAQLDEGQQMAKKF-GVDVLLGPGALTSLPEAL---K 137

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
             +R  D  +  ED  + +     G      ++A +TI  GC+  CT+C+VP TRG E+S
Sbjct: 138 ANERFFDLTFR-EDVLDYIPPPPKG-----ALSAHVTIIRGCNHHCTYCIVPTTRGPEVS 191

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R    ++ E   L   GV E+TLLGQNVN++ GK   G   +F++LL  +  + G+ R+R
Sbjct: 192 RHPDLILKEIELLKQAGVVEVTLLGQNVNSY-GKDQPGFP-SFAELLRMVGGM-GIPRVR 248

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           + TSHP + +D +I+A  +   +  Y+HLPVQSGSDR+L+ M R +    Y + I +IR 
Sbjct: 249 FLTSHPVNFTDDIIEAIAETPAICRYIHLPVQSGSDRVLRRMAREYRRAHYLERIRKIRE 308

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             PD  +S+D IVGFPGET++DF+ T+ L D++GY QA+ F YSPR GTP     + +  
Sbjct: 309 ALPDAVLSTDIIVGFPGETEEDFQETLSLYDEVGYDQAYMFIYSPRPGTPAYKHFQDLPR 368

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
            VK ERL+ L +K +E     N   VG+ +EVL+    KE+G + G       V++ +  
Sbjct: 369 EVKVERLMRLIEKQKEWSYRRNLEWVGKTVEVLVRGEAKEEGFVQGHDRGNHPVLVPASQ 428

Query: 445 HNIGDIIKVRITDVKISTLYGELV 468
             +  + +V I       L+GE+V
Sbjct: 429 APVPGLYQVEIKQATPHLLFGEVV 452


>gi|254304069|ref|ZP_04971427.1| tRNA 2-methylthioadenosine synthase [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
 gi|148324261|gb|EDK89511.1| tRNA 2-methylthioadenosine synthase [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
          Length = 435

 Score =  290 bits (743), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 160/441 (36%), Positives = 264/441 (59%), Gaps = 16/441 (3%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           +YGCQMNV +S +++ +F + GY+    +D+AD + LNTC +RE AA +++  LG ++ L
Sbjct: 8   TYGCQMNVNESAKIKKIFQNLGYDVTEEIDNADAVFLNTCTVREGAATQIFGKLGELKAL 67

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
           K  R       ++ V GC AQ +GEE++++ PI+++V+G Q   R+P+ +E+    +   
Sbjct: 68  KEKR-----GTIIGVTGCFAQEQGEELVKKFPIIDIVMGNQNIGRIPQAIEKIENNESTH 122

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
           +     ED+       + G ++    TA ++I  GC+ FCTFC+VPY RG E S  L ++
Sbjct: 123 EVYTDNEDELPPRLDAEFGSDQ----TASISITYGCNNFCTFCIVPYVRGRERSVPLEEI 178

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270
           V +  + +  G  EI LLGQNVN++     +G+   F+ LL  + +++G   +R+ + HP
Sbjct: 179 VKDVEQYVKKGAKEIVLLGQNVNSYGKDFKNGD--NFAKLLDEICKVEGDYIVRFVSPHP 236

Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330
           RD +D +I      D +   LHLP+QSGS +ILK M R +T  +Y  ++D+I+S  P +A
Sbjct: 237 RDFTDDVIDVIAKNDKISKCLHLPLQSGSSQILKKMGRGYTKEKYLALVDKIKSKIPGVA 296

Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER 390
           +++D IVGFPGET++DF  T+D+V K+ +  ++ F YS R GT  + M  Q++E+VK ER
Sbjct: 297 LTADIIVGFPGETEEDFLDTVDVVQKVSFDNSYMFMYSIRKGTKAATMDNQIEESVKKER 356

Query: 391 LLCLQKKLREQQVSFNDAC--VGQIIEVLIEKHGKE-KGKLVGRSPWLQSVVLNSKNHNI 447
           L  L +   + + SF+++     +I++VL+E   K+ K  L GR+   + V+        
Sbjct: 357 LQRLME--VQNKCSFDESSKYKDKIVKVLVEGPSKKNKEVLSGRTSTNKVVLFKGDLALK 414

Query: 448 GDIIKVRITDVKISTLYGELV 468
           G  + V+I + K  TLYGE+V
Sbjct: 415 GQFVNVKINECKTWTLYGEIV 435


>gi|304389608|ref|ZP_07371570.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Mobiluncus curtisii
           subsp. curtisii ATCC 35241]
 gi|304327161|gb|EFL94397.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Mobiluncus curtisii
           subsp. curtisii ATCC 35241]
          Length = 498

 Score =  290 bits (743), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 165/456 (36%), Positives = 263/456 (57%), Gaps = 36/456 (7%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGY----------ERVNSMDD--ADLIVLNTC 70
            P+ + VK+ GCQMN +DS RM  +  + G+           R  +  D  ADL+VLNTC
Sbjct: 3   TPRTYLVKTLGCQMNEHDSERMAGLLDAAGWVPVAEVPQKAARATNAGDGGADLVVLNTC 62

Query: 71  HIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGP 130
            +RE A  K+Y  LG++ ++K +R      +++ V GC AQ EG +I+ R+P V+ V G 
Sbjct: 63  SVREAAGTKLYGHLGQLADVKRNRP----GMMIAVGGCFAQQEGSKIIDRAPWVDAVFGT 118

Query: 131 QTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190
                LP LL+RA   +   +    +E+  +    V   + R+   +A+++I  GC+  C
Sbjct: 119 HNIDALPVLLKRAEHNQ---EAAVEIEESLKVFPSVLPAH-RQSPASAWVSISVGCNNTC 174

Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSD 249
           TFC+VP  RG E  R+ + +V E + ++D G  E+TLLGQNVN++   G+  G +  F+D
Sbjct: 175 TFCIVPSLRGRERDRNPADIVAEVKAVVDAGALEVTLLGQNVNSY---GMSFGRRGAFAD 231

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
           LL  + +  GL RLR+T+ HP   ++ +I A  +   +MP LH P+QSGSDRIL+ M R 
Sbjct: 232 LLREVGKTPGLERLRFTSPHPAAFTEEVIAAMAETPTVMPSLHFPLQSGSDRILRQMRRS 291

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369
           + +  + +I+  +RS  P+ AI++D IVGFPGET+ DF+ T+D++ +  +  AF+F YS 
Sbjct: 292 YRSERFLRILREVRSAIPEAAITTDVIVGFPGETEADFQDTLDVLSEARFQAAFTFIYSR 351

Query: 370 RLGTPGSNMLEQVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-- 424
           R GTP ++  +QVD  + A   +RLL LQ+K+  ++   N+   G+I+EVL+   G++  
Sbjct: 352 RPGTPAADRDDQVDPEIVAQRYQRLLELQEKITLEE---NEKQEGRIVEVLVTAGGRKDE 408

Query: 425 -KGKLVGRSP---WLQSVVLNSKNHNIGDIIKVRIT 456
              ++ GR+     +   V        GD + VR+T
Sbjct: 409 ATARMSGRAQDNRLVHFAVPQGIKVRPGDFVTVRVT 444


>gi|311739645|ref|ZP_07713480.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Corynebacterium
           pseudogenitalium ATCC 33035]
 gi|311305461|gb|EFQ81529.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Corynebacterium
           pseudogenitalium ATCC 33035]
          Length = 520

 Score =  290 bits (743), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 162/460 (35%), Positives = 252/460 (54%), Gaps = 32/460 (6%)

Query: 18  VDQCIVPQRFF-VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA 76
           V+Q I   R + V+++GCQMNV+DS R+  +    GY       + DLIV NTC +RE A
Sbjct: 13  VEQTIADNRTYEVRTFGCQMNVHDSERISGLLEEAGYAAAGEGVEPDLIVFNTCAVRENA 72

Query: 77  AEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL 136
            +++Y  LG ++  K +       + + V GC+AQ + + +L  +P V+ V G      L
Sbjct: 73  DKRLYGTLGALKKTKENHPG----MQIAVGGCLAQKDKDTVLDNAPWVDAVFGTHNMAAL 128

Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
           P LLERAR      +    + D  E    V     R+     ++++  GC+  CTFC+VP
Sbjct: 129 PTLLERARHND---EAQVEIVDSLEAFPSVLPA-KRESAYAGWVSVSVGCNNTCTFCIVP 184

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW----RGKGLDGEKCTFSDLLY 252
             RG E  R    ++ E + L+D GV E+TLLGQNVNA+        +  ++  FS LL 
Sbjct: 185 SLRGKEEDRRPGDILAEVKALVDQGVSEVTLLGQNVNAYGVNFADPNMPRDRFAFSKLLR 244

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
            + +I+GL RLR+T+ HP + +  +I A  +   + P LH+P+QSGSD++LK M R +  
Sbjct: 245 EVGKIEGLERLRFTSPHPAEFTSDVIDAMAETPAVCPQLHMPLQSGSDKVLKDMRRSYRT 304

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
            ++ +I+D +R   P  AI++D IVGFPGET++DF+ TM+LV +  +A AF+F+YSPR G
Sbjct: 305 KKFLRILDEVRDKIPHAAITTDIIVGFPGETEEDFQDTMELVRRARFASAFTFQYSPRPG 364

Query: 373 TPGSNMLEQVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK---- 425
           TP + M +Q+ + V   + ERL+ LQ  +   Q   N   +G  +E+L++  G  K    
Sbjct: 365 TPAAEMEDQIPKEVVQDRFERLVALQDSI---QAEANKMLIGTDVELLVQAEGGRKNDET 421

Query: 426 ---------GKLVGRSPWLQSVVLNSKNHNIGDIIKVRIT 456
                    G+LV  +P        S     GD++  ++T
Sbjct: 422 HRMTGRARDGRLVHFTPVDSDGTDISAEIRPGDVVHTQVT 461


>gi|146299610|ref|YP_001194201.1| RNA modification protein [Flavobacterium johnsoniae UW101]
 gi|229890535|sp|A5FIU2|MIAB_FLAJ1 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|146154028|gb|ABQ04882.1| RNA modification enzyme, MiaB family [Flavobacterium johnsoniae
           UW101]
          Length = 481

 Score =  290 bits (743), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 173/460 (37%), Positives = 261/460 (56%), Gaps = 24/460 (5%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F++SYGC MN  DS  +  +    GY   + +++ADL+++NTC IR+KA + +   L
Sbjct: 24  KKLFIESYGCAMNFSDSEVVASILSDGGYNTTSVLEEADLVLVNTCSIRDKAEQTIRKRL 83

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            +   +K +  K    + V V GC+A+    + L    IV++VVGP  Y  LP LL    
Sbjct: 84  EKYNAVKRTNPK----MKVGVLGCMAERLKSQFLEEEKIVDLVVGPDAYKDLPNLLAEVE 139

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G+  ++   S E+ +  +S V    N   G+TA ++I  GCD  CTFCVVP+TRG E S
Sbjct: 140 EGRDAINVILSKEETYGDISPVRLMSN---GITALVSITRGCDNMCTFCVVPFTRGRERS 196

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNA--WRGKGL--------DGEKCT---FSDLL 251
           R    ++ E + L   G  EITLLGQNV++  W G GL        + +K T   F  LL
Sbjct: 197 REPQSIMAEIQDLWSKGFKEITLLGQNVDSYLWYGGGLKKDFVNASEMQKATAVDFDQLL 256

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
             ++     +R+R++TS+P+DM + ++        +  ++HLPVQSGS+RILK MNR H+
Sbjct: 257 EMVAVGFPKMRIRFSTSNPQDMHESILHVMAKYPNICKHIHLPVQSGSNRILKEMNRLHS 316

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
             EY  +ID+IR++ PD +IS D I GFP ET+ D + TM L++ + Y   + + YS R 
Sbjct: 317 REEYMALIDKIRAIVPDASISQDMIAGFPTETEQDHQDTMSLMEYVKYNFGYMYSYSERP 376

Query: 372 GT-PGSNMLEQVDENVKAERLLCLQKKLREQQVSF-NDACVGQIIEVLIEK-HGKEKGKL 428
           GT  G  M + V+E  KA RL  +   L+++   F ++  VG+ +EVL+EK   K K + 
Sbjct: 377 GTLAGRKMKDDVEEETKARRLQEIV-DLQQKHAWFRSEEFVGKTVEVLVEKVSKKSKDEF 435

Query: 429 VGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            GR+    +VV   +N+ IGD + V+IT     TL GE V
Sbjct: 436 SGRNSQSITVVFPKENYKIGDFVNVKITSCTSGTLKGEAV 475


>gi|221194392|ref|ZP_03567449.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Atopobium rimae ATCC
           49626]
 gi|221185296|gb|EEE17686.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Atopobium rimae ATCC
           49626]
          Length = 455

 Score =  290 bits (743), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 169/455 (37%), Positives = 258/455 (56%), Gaps = 20/455 (4%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           +V + + +K++GCQMN++DS R+  +    G   V S DDAD+++  TC +RE A +++Y
Sbjct: 7   LVGKTYHIKTFGCQMNLHDSERVRGLLDVCGCNEVESTDDADIVIFMTCSVRENADQRLY 66

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
              G+   + ++     G  +V + GC+AQ +GE + ++ P V+VV G      +P LL 
Sbjct: 67  ---GQASAMVSAPTPPSGKRVVAIGGCIAQRDGEALKKKVPAVDVVFGTSALASVPSLLS 123

Query: 142 RARFGKRVVDTDYSVE-DKFERLS--IVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
            A       D D SV+ D  E       D   +R +   A++ I  GC+ FCT+C+VPY 
Sbjct: 124 AA-----FADDDDSVKVDTSEEHKGFSTDLPSHRDQVFHAWVPIMTGCNNFCTYCIVPYV 178

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258
           RG E SR+   VV E  +L+ +GV EITLLGQNVN++ G+ L G    F++LL ++ +  
Sbjct: 179 RGRERSRTFEAVVGECERLVADGVREITLLGQNVNSY-GRDLYGTP-RFAELLRAVGKT- 235

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           G+ RLR+T+S+P+D++D  I A  +   +MP+LHL VQSGS RILK MNR +T  EY  +
Sbjct: 236 GIERLRFTSSNPKDLTDETIAAMKETPAVMPHLHLAVQSGSTRILKKMNRSYTREEYLDL 295

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           + R+++  PDIA S+D IVGFPGET++DF  T+ LV +  Y+ A++F YS R GTP +  
Sbjct: 296 VHRLKAAMPDIAFSTDIIVGFPGETEEDFEQTLSLVKEAAYSSAYTFIYSKRPGTPAAKF 355

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQS 437
            +     V  ER   L   + +Q    N   +   + VL+E   K   + +VG S   Q+
Sbjct: 356 EDNTSHEVIQERFNRLTDLVAKQAFEANQKDLHTTVSVLVENTSKRDNRVMVGHSEKNQT 415

Query: 438 VVL-----NSKNHNIGDIIKVRITDVKISTLYGEL 467
           V       +  +  IG I+ V +   +   L G L
Sbjct: 416 VHFVLPEGHVSDDYIGKIVDVYVEKARTWYLKGTL 450


>gi|70726621|ref|YP_253535.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus
           haemolyticus JCSC1435]
 gi|123734986|sp|Q4L5Z6|MIAB_STAHJ RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|68447345|dbj|BAE04929.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 514

 Score =  290 bits (742), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 164/443 (37%), Positives = 260/443 (58%), Gaps = 15/443 (3%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           F +K+YGCQMN +D+  M  +  + GY     +++AD+I++NTC IRE A  KV+S +G 
Sbjct: 70  FLIKTYGCQMNAHDTEVMAGILQALGYTATEDINEADVILINTCAIRENAENKVFSEIGN 129

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           +++LK +R     + L+ V GC++Q E    +IL+    V+++ G    ++LPE+LE A 
Sbjct: 130 LKHLKKNR----PEALIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHKLPEILEEAY 185

Query: 145 FGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             K +V   +S E D  E L  V     R+    A++ I  GCDKFCT+C+VP+TRG E 
Sbjct: 186 LSKAMVVEVWSKEGDIIENLPKV-----REGSTKAWVNIMYGCDKFCTYCIVPFTRGKER 240

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR    +++E R L  +G  EITLLGQNVN++ GK +   +    DLL  +S+I  + R+
Sbjct: 241 SRRPEDIIEEVRGLARDGYKEITLLGQNVNSY-GKDIKDLEYGLGDLLEDISKID-IPRV 298

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+TTSHP D +D +I+       ++P++HLPVQSG++ +LK M R++T   Y  +++RI+
Sbjct: 299 RFTTSHPWDFTDRMIEVIAKGGNIVPHIHLPVQSGNNAVLKIMGRKYTRESYLDLVNRIK 358

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              P++A+++D IVG+P ET++ F  T+ L D++ +  A+++ YS R GTP + M + V 
Sbjct: 359 KSIPNVALTTDIIVGYPNETEEQFEETLSLYDEVQFEHAYTYLYSQRDGTPAAKMKDNVP 418

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVLNS 442
           E+VK  RL  L KK+        +   G+ + VL E   K+    L G +   + V    
Sbjct: 419 EDVKKARLQRLNKKVGHYSEKAMNQYEGKTVTVLCEGSSKKDDTVLAGYTEKNKLVNFKG 478

Query: 443 KNHNIGDIIKVRITDVKISTLYG 465
               IG ++ V I + K  +L G
Sbjct: 479 PREAIGKLVNVEIDETKQYSLNG 501


>gi|237733845|ref|ZP_04564326.1| tRNA 2-methylthioadenine synthetase [Mollicutes bacterium D7]
 gi|229383183|gb|EEO33274.1| tRNA 2-methylthioadenine synthetase [Coprobacillus sp. D7]
          Length = 415

 Score =  290 bits (742), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 164/422 (38%), Positives = 247/422 (58%), Gaps = 14/422 (3%)

Query: 50  SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCV 109
           S  Y+    + +AD+IVLNTC IRE A EKV+  +G ++NLK    K   +L+  + GC+
Sbjct: 3   SMSYQPTTEIKEADVIVLNTCAIRENAEEKVFGKVGYVKNLK----KTNPNLIFAMCGCM 58

Query: 110 AQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVD 167
           AQ E     IL + P V+++ G    +RLPELL+ A + K ++   +S E       I +
Sbjct: 59  AQEEVVVNRILEKHPHVDLIFGTHNIHRLPELLKDALYSKEMIVEVWSKEGDV----IEN 114

Query: 168 GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITL 227
               R     A++ I  GC+KFCT+C+VPYTRG E SR    ++ E  +L+  G  EITL
Sbjct: 115 APVRRDNKYKAWVNIMYGCNKFCTYCIVPYTRGKERSRLAKDIIKEVEELVAEGYQEITL 174

Query: 228 LGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL 287
           LGQNVN++ GK L GE   FS+LL  +++   + R+R+TTSHP D S+ +IK     D +
Sbjct: 175 LGQNVNSY-GKDL-GEDYNFSNLLEDVAKT-NIPRIRFTTSHPWDFSEDMIKIIAKYDNI 231

Query: 288 MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDF 347
           MP +HLPVQSG++ +LK M RR++  +Y ++  +I+   PD  +++D IVGFP ET + +
Sbjct: 232 MPAIHLPVQSGNNEVLKLMGRRYSREQYLELFHKIKEYIPDCTVTTDIIVGFPNETHEQY 291

Query: 348 RATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFND 407
             T+ L  +  Y  A++F YSPR GTP + M++ V  + K +RL  L + + E+    N 
Sbjct: 292 LDTLSLYQECEYDLAYTFVYSPRAGTPAAKMVDNVASDEKDQRLYKLNEIVNEKAYKQNQ 351

Query: 408 ACVGQIIEVLIE-KHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGE 466
             + +I+EVL+E    K+   L G +   + V       +IG IIKV+IT+ K   L GE
Sbjct: 352 RFLNKIVEVLVEGTSKKDDSMLTGYTRHQKLVNFKGDPKDIGKIIKVKITEAKTWALKGE 411

Query: 467 LV 468
            +
Sbjct: 412 SI 413


>gi|160880731|ref|YP_001559699.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Clostridium
           phytofermentans ISDg]
 gi|160429397|gb|ABX42960.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Clostridium
           phytofermentans ISDg]
          Length = 487

 Score =  290 bits (742), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 164/458 (35%), Positives = 265/458 (57%), Gaps = 14/458 (3%)

Query: 14  VSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIR 73
           V ++ D+   P  F V+++GCQMN  DS ++  +  + GY   +S ++AD +V NTC +R
Sbjct: 39  VKKVADELGRPLTFNVQTFGCQMNAKDSEKLAGILETIGYVESDS-EEADFVVYNTCTVR 97

Query: 74  EKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQ 131
           E A  +VY  +G + NLK    K+   + + + GC+ Q     E+I +    V++V G  
Sbjct: 98  ENANTRVYGRIGFLGNLK----KKNPHMRIALCGCMMQESHVVEKIKKSYRFVDIVFGTH 153

Query: 132 TYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCT 191
             ++L EL+      K++V   +   DK       +  Y  K GV     I  GC+ FC+
Sbjct: 154 NIFKLAELIYARHTTKKMVIDIWKETDKIVEELPSEQKYKFKAGVN----IMYGCNNFCS 209

Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLL 251
           +C+VPY RG E SR+   ++ E ++L+  GV E+ LLGQNVN++ GK LD E  +F+ LL
Sbjct: 210 YCIVPYVRGRERSRNPEDIIKEIKQLVSKGVVEVMLLGQNVNSY-GKTLD-EPVSFAQLL 267

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
             + +++GL R+R+ T HP+D+S+ +I+   +   +  ++HLPVQSGS  +L  MNR++T
Sbjct: 268 QMVEQVEGLKRIRFMTPHPKDLSNDVIEVMKNSKKICNHIHLPVQSGSTELLMKMNRKYT 327

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
             +Y  ++DRI+   P+I++++D IVGFPGET++DF  T+D+V K+GY  A++F YS R 
Sbjct: 328 KEDYLNLVDRIKMAMPNISLTTDIIVGFPGETEEDFLDTLDVVRKVGYDSAYTFIYSKRS 387

Query: 372 GTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-G 430
           GTP + M  Q+ E V  ER   L   +RE     +    G+I EVL+E+  ++   L+ G
Sbjct: 388 GTPAATMENQIPEEVANERFQRLLTTIRESSSKISKDDEGKIAEVLVEEVNEQDNSLMTG 447

Query: 431 RSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           R      V        IG+I+ V++++ K     GE++
Sbjct: 448 RLSNNVLVHFKGTKELIGNIVSVKLSECKGFYYMGEMM 485


>gi|213963289|ref|ZP_03391546.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Capnocytophaga sputigena
           Capno]
 gi|213954151|gb|EEB65476.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Capnocytophaga sputigena
           Capno]
          Length = 482

 Score =  290 bits (742), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 172/459 (37%), Positives = 260/459 (56%), Gaps = 22/459 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ +++SYGCQMN  DS  +  +    GY   +++DDADL+++NTC +REKA + +   L
Sbjct: 24  KKLYIESYGCQMNFSDSEIVASILSKVGYNTTDTVDDADLVLINTCSVREKAEQTIRKRL 83

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            +    K    ++   + V V GC+A+      L    IV++VVGP  Y  LP LLE   
Sbjct: 84  EQFNVYK----RKKPTMKVGVLGCMAERVKHAFLEEEKIVDMVVGPDAYKDLPNLLEEVD 139

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G+  V+   S ++ +  ++ +    N   GVTAF++I  GCD  CTFC+VP+TRG E S
Sbjct: 140 EGREAVNVILSKDETYADIAPIRLNSN---GVTAFVSITRGCDNMCTFCIVPFTRGRERS 196

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNA--WRGKGL--DGEKCT---------FSDLL 251
           R    +++E   L   G  E+TLLGQNV++  W G GL  D  K +         F+ LL
Sbjct: 197 RDPYSILNEIADLQARGFKEVTLLGQNVDSYLWYGGGLKKDFSKASEMQQATAINFAKLL 256

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
             ++  +  +R+R++TS+P+DM+  +I        +  Y+HLPVQSGS+RILK+MNR HT
Sbjct: 257 DMVATAQPEMRIRFSTSNPQDMTLDVIDTMAKHPNICKYIHLPVQSGSNRILKAMNRLHT 316

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
             EY  +ID IR   P+ AIS D I GFP ET++D R T+ L++ + Y   F F YS R 
Sbjct: 317 REEYFTLIDSIRERIPECAISQDMIAGFPTETEEDHRDTLSLMEYVKYDFGFMFAYSERP 376

Query: 372 GTPGSNMLE-QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLV 429
           GT  +  +E  V E VK  RL  +    ++  +    A VG+++EVLIE   K+   + +
Sbjct: 377 GTLAARKIEDDVPEEVKKRRLAEIIDLQQKHSLYRTQAQVGKVVEVLIEGTSKKSADEWM 436

Query: 430 GRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           GR+     VV   +N+ +GD + V IT+   +TL G+ +
Sbjct: 437 GRNTQNTVVVFPKENYKVGDFVLVEITNCTSTTLIGKAI 475


>gi|291519342|emb|CBK74563.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Butyrivibrio fibrisolvens
           16/4]
          Length = 477

 Score =  290 bits (742), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 171/448 (38%), Positives = 260/448 (58%), Gaps = 23/448 (5%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V ++GCQMN  DS ++  +    GY    S ++AD ++ NTC +RE A  KVY  LG + 
Sbjct: 44  VTTFGCQMNARDSEKLLGILKQIGYVETES-ENADFVIYNTCTVRENANNKVYGHLGILH 102

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
             K    K+  D+++ + GC+ Q     E +      V+++ G    Y+  EL   A   
Sbjct: 103 GYK----KKNKDMMIGLCGCMMQEPTVIEHLKANYKFVDLIFGTHNLYKFAELFTTALLN 158

Query: 147 KR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
           K+  ++D     +   E L I     +RK    + + I  GC+ FC++C+VPY RG E S
Sbjct: 159 KKGMIIDIWKDTDKIVENLPI-----SRKYPFKSGVNISFGCNNFCSYCIVPYVRGRERS 213

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R    +V E ++L+ +GV E+ LLGQNVN++ G GL+ EK +F+DLL  +++I+GL R+R
Sbjct: 214 RKPEDIVAEIKELVADGVVEVMLLGQNVNSY-GVGLE-EKISFADLLRMVNDIEGLKRIR 271

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           + T HP+D+SD LI+A    D +  ++HLP+QSGS  ILK MNRR+T   Y  +++++R+
Sbjct: 272 FMTPHPKDLSDDLIEAMATCDKVCHHMHLPLQSGSTEILKKMNRRYTKEHYLGLVEKLRA 331

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             PD+AI++D IVGFPGET++DF  TMD+VDK+ Y  AF+F YS R GTP + M  QV E
Sbjct: 332 RIPDVAITTDIIVGFPGETEEDFLDTMDVVDKVHYDSAFTFIYSKRTGTPAAAMENQVPE 391

Query: 385 NV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GRSPWLQSVVL 440
           +V   + +RLL L +K    +V    +  G + EVL+E+  ++   LV G+     +V  
Sbjct: 392 DVVKDRFDRLLALVQKHGHDKVK---SLEGTVQEVLVEEVNEQDNTLVSGKLANNVTVHF 448

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 IG I+ VR+   K     GE+ 
Sbjct: 449 PGDESMIGKIVNVRLNCCKGFYFIGEIA 476


>gi|55981277|ref|YP_144574.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Thermus
           thermophilus HB8]
 gi|81364777|sp|Q5SME9|MIAB_THET8 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|55772690|dbj|BAD71131.1| conserved hypothetical protein [Thermus thermophilus HB8]
          Length = 465

 Score =  290 bits (742), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 169/444 (38%), Positives = 258/444 (58%), Gaps = 19/444 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R  + +YGCQMN YDS  +     S G+E V+S+++AD +++NTC +R K  EKV S LG
Sbjct: 27  RAHIITYGCQMNEYDSHLVASELVSLGWELVDSVEEADFVLVNTCAVRGKPVEKVRSLLG 86

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQA-EGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           ++R  K  R      LL+ + GC+AQ  EG+++ ++   V+V++GP     LPE L   +
Sbjct: 87  QLRKEKERR-----GLLIGMMGCLAQLDEGQQMAKKF-GVDVLLGPGALTSLPEAL---K 137

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
             +R  D  +  ED  + +     G      ++A +TI  GC+  CT+C+VP TRG E+S
Sbjct: 138 ANERFWDLTFR-EDVLDYIPPPPKG-----ALSAHVTIIRGCNHHCTYCIVPTTRGPEVS 191

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R    ++ E   L   GV E+TLLGQNVN++ GK   G   +F++LL  +  + G+ R+R
Sbjct: 192 RHPDLILKEIELLKQAGVVEVTLLGQNVNSY-GKDQPGFP-SFAELLRMVGGM-GIPRVR 248

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           + TSHP + +D +I+A  +   +  Y+HLPVQSGSDR+L+ M R +    Y + I +IR 
Sbjct: 249 FLTSHPVNFTDDIIEAIAETPAICRYIHLPVQSGSDRVLRRMAREYRRAHYLERIRKIRE 308

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             PD  +S+D IVGFPGET++DF+ T+ L D++GY QA+ F YSPR GTP     + +  
Sbjct: 309 ALPDAVLSTDIIVGFPGETEEDFQETLSLYDEVGYDQAYMFIYSPRPGTPAYKHFQDLPR 368

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
            VK ERL+ L +K +E     N   VG+ +EVL+    KE+G + G       V++ +  
Sbjct: 369 EVKVERLMRLIEKQKEWSYRRNLEWVGKTVEVLVRGEAKEEGFVQGHDRGNHPVLVPASQ 428

Query: 445 HNIGDIIKVRITDVKISTLYGELV 468
             +  + +V I       L+GE+V
Sbjct: 429 APVPGLYQVEIKQATPHLLFGEVV 452


>gi|269215580|ref|ZP_06159434.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Slackia exigua ATCC
           700122]
 gi|269131067|gb|EEZ62142.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Slackia exigua ATCC
           700122]
          Length = 454

 Score =  290 bits (742), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 178/460 (38%), Positives = 275/460 (59%), Gaps = 33/460 (7%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + F+  +YGCQMN +DS R+  +  S G   V++++++++++  TC +RE+A  ++   +
Sbjct: 10  KTFYTFTYGCQMNEHDSERIAGLLESCGCVPVSTLEESEIVIFMTCCVRERADIRL---M 66

Query: 85  GRIRNLKNSRIKEGGDL---LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           G++  +K   + EG  L   +V + GC+ Q +G  +      V+VV G Q   RLP L+ 
Sbjct: 67  GQVSTIKGVPLPEGSALDKRIVCIGGCIGQRDGIALTETLDNVDVVFGTQNIERLPYLIT 126

Query: 142 RA-RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
                G   V+ +    D F      D   +R++  +A+L I  GCD FCTFC+VPY RG
Sbjct: 127 GVLSQGGHFVEIEQD-SDSFS----TDLPSDREKPWSAWLPITVGCDNFCTFCIVPYVRG 181

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E SR++  VV  A   +  GV EITLLGQNVN++ G+ L G    F+D+L +++   G+
Sbjct: 182 RERSRAIEDVVMNAEAYVAEGVKEITLLGQNVNSY-GRDLYGSP-RFADVLKAVAA-TGV 238

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            RLR+ TSHP+D++D +I A G+LD LMP LHLPVQSGSDRIL+ MNR + +  Y  ++ 
Sbjct: 239 ERLRFATSHPKDLTDEVIAAFGELDNLMPALHLPVQSGSDRILEDMNRTYDSAHYLGLVR 298

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R+  PDIA+S+D IVGFPGET++DF+AT DL++ +GY+Q F+F YS R GTP ++M +
Sbjct: 299 KLRASCPDIALSTDVIVGFPGETEEDFQATYDLIESVGYSQVFTFIYSRREGTPAADMFD 358

Query: 381 QVDENV---KAERLLCL-QKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWL 435
               +V   + +RL+ L Q+K  EQ   F    +G+ ++VL E    ++   LVG SP  
Sbjct: 359 DTPRDVIQRRFDRLVELVQRKALEQNRRF----LGRDLDVLFEGPSRRDPSMLVGHSP-- 412

Query: 436 QSVVLNSK-------NHNIGDIIKVRITDVKISTLYGELV 468
            +V +++        +  +G    V I + K   L G LV
Sbjct: 413 HNVTVHAPLPAGMDASAFVGRTCLVHIDEAKTWYLSGTLV 452


>gi|326334454|ref|ZP_08200666.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Capnocytophaga sp. oral
           taxon 338 str. F0234]
 gi|325693421|gb|EGD35348.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Capnocytophaga sp. oral
           taxon 338 str. F0234]
          Length = 481

 Score =  290 bits (742), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 178/466 (38%), Positives = 264/466 (56%), Gaps = 36/466 (7%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ +++SYGCQMN  DS  +  +   +G+   + + +ADLI++NTC +REKA + +   L
Sbjct: 24  RKLYIESYGCQMNFSDSEIVASILHKEGFNTTDKLHEADLILINTCSVREKAEQTIRKRL 83

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            +   +K  +      + V V GC+A+    + L    IV++VVGP  Y  LP LL    
Sbjct: 84  EQFNTVKRHKPA----MRVGVLGCMAERLKHKFLEEEHIVDLVVGPDAYKDLPNLLTEVD 139

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G+  V+   S ++ +  +S +    N   GVTAF++I  GCD  CTFC+VP+TRG E S
Sbjct: 140 NGRDAVNVQLSKDETYADISPIRLNSN---GVTAFVSITRGCDNMCTFCIVPFTRGRERS 196

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNA--WRGKGL--DGEKCT---------FSDLL 251
           R    +++E  +L   G  EITLLGQNV++  W G GL  D EK +         F+ LL
Sbjct: 197 RDPHSIINEIAELQQRGYKEITLLGQNVDSYLWYGGGLKKDFEKASDIQKVTAVNFAKLL 256

Query: 252 YSLSEIKGLVRLRYTTSHPRDMS----DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307
             ++     +R+R++TS+P+DM+    D + K H     +  Y+HLPVQSGS+RILK+MN
Sbjct: 257 DIVASEFPKMRIRFSTSNPQDMTLDVIDTMAKHHN----ICKYIHLPVQSGSNRILKAMN 312

Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           R HT  EY  +ID IR   PD AIS D I GFP ET++D + T+ L++ + Y   F F Y
Sbjct: 313 RLHTREEYFALIDGIRERIPDCAISQDMITGFPTETEEDHQDTLSLMEYVKYDFGFMFAY 372

Query: 368 SPRLGT-PGSNMLEQVDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGK 423
           S R GT     +L+ V E VK  RL   + LQ+K    +     A VG+ +EVLIE + K
Sbjct: 373 SERPGTLAARKILDDVPEEVKKRRLAEIIDLQQKHSHYRTQ---AQVGKTVEVLIEGNSK 429

Query: 424 EKGK-LVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           +  +  +GR+     VV   + + +GD + V+IT+   +TL GE V
Sbjct: 430 KSDQEWMGRNTQNTVVVFPKEQYKVGDFVNVKITNCTSTTLIGEAV 475


>gi|315656851|ref|ZP_07909738.1| tRNA 2-methylthioadenine synthetase [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
 gi|315492806|gb|EFU82410.1| tRNA 2-methylthioadenine synthetase [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
          Length = 498

 Score =  290 bits (742), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 166/456 (36%), Positives = 263/456 (57%), Gaps = 36/456 (7%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGY----------ERVNSMDD--ADLIVLNTC 70
            P+ + VK+ GCQMN +DS RM  +  + G+           R  +  D  ADL+VLNTC
Sbjct: 3   TPRTYLVKTLGCQMNEHDSERMAGLLDAAGWVPVAEVPQKAARATNAGDGGADLVVLNTC 62

Query: 71  HIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGP 130
            +RE A  K+Y  LG++ ++K +R      +++ V GC AQ EG +I+ R+P V+ V G 
Sbjct: 63  SVREAAGTKLYGHLGQLADVKRNRP----GMMIAVGGCFAQQEGSKIIDRAPWVDAVFGT 118

Query: 131 QTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190
                LP LL+RA   +   +    +E+  +    V    +R+   +A+++I  GC+  C
Sbjct: 119 HNIDALPVLLKRAEHNQ---EAAVEIEESLKVFPSVLP-VHRQSPASAWVSISVGCNNTC 174

Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSD 249
           TFC+VP  RG E  R+ + +V E + ++D G  E+TLLGQNVN++   G+  G +  F+D
Sbjct: 175 TFCIVPSLRGRERDRNPADIVAEVKAVVDAGALEVTLLGQNVNSY---GMSFGRRGAFAD 231

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
           LL  + +  GL RLR+T+ HP   ++ +I A  +   +MP LH P+QSGSDRIL+ M R 
Sbjct: 232 LLREVGKTPGLERLRFTSPHPAAFTEEVIAAMAETPTVMPSLHFPLQSGSDRILRQMRRS 291

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369
           + +  + +I+  +RS  P+ AI++D IVGFPGET+ DF+ T+D++ +  +  AF+F YS 
Sbjct: 292 YRSERFLRILREVRSAIPEAAITTDVIVGFPGETEADFQDTLDVLSEARFQAAFTFIYSR 351

Query: 370 RLGTPGSNMLEQVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-- 424
           R GTP ++  +QVD  V A   +RLL LQ+K+  ++   N+   G+I+EVL+   G++  
Sbjct: 352 RPGTPAADRDDQVDPEVVAQRYQRLLELQEKITLEE---NEKQEGRIVEVLVTAGGRKDE 408

Query: 425 -KGKLVGRSP---WLQSVVLNSKNHNIGDIIKVRIT 456
              ++ GR+     +   V        GD + VR+T
Sbjct: 409 ATARMSGRAQDNRLVHFAVPQGIKVRPGDFVTVRVT 444


>gi|315655228|ref|ZP_07908129.1| tRNA-I(6)A37 thiotransferase [Mobiluncus curtisii ATCC 51333]
 gi|315490483|gb|EFU80107.1| tRNA-I(6)A37 thiotransferase [Mobiluncus curtisii ATCC 51333]
          Length = 498

 Score =  290 bits (741), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 166/456 (36%), Positives = 262/456 (57%), Gaps = 36/456 (7%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGY----------ERVNSMDD--ADLIVLNTC 70
            P+ + VK+ GCQMN +DS RM  +  + G+           R  +  D  ADL+VLNTC
Sbjct: 3   TPRTYLVKTLGCQMNEHDSERMAGLLDAAGWVPVAEVPQKAARATNAGDGGADLVVLNTC 62

Query: 71  HIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGP 130
            +RE A  K+Y  LG++ ++K +R      +++ V GC AQ EG +I+ R+P V+ V G 
Sbjct: 63  SVREAAGTKLYGHLGQLADVKRNRP----GMMIAVGGCFAQQEGSKIIDRAPWVDAVFGT 118

Query: 131 QTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190
                LP LL+RA   +   +    +E+  +    V   + R+   +A+++I  GC+  C
Sbjct: 119 HNIDALPILLKRAEHNQ---EAAVEIEESLKVFPSVLPAH-RQSPASAWVSISVGCNNTC 174

Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSD 249
           TFC+VP  RG E  R+ + +V E + ++D G  E+TLLGQNVN++   G+  G +  F+D
Sbjct: 175 TFCIVPSLRGRERDRNPADIVAEVKAVVDAGALEVTLLGQNVNSY---GMSFGRRGAFAD 231

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
           LL  + +  GL RLR+T+ HP   ++ +I A  +   +MP LH P+QSGSDRIL+ M R 
Sbjct: 232 LLREVGKTPGLERLRFTSPHPAAFTEEVIAAMAETPTVMPSLHFPLQSGSDRILRQMRRS 291

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369
           + +  + +I+  +RS  P  AI++D IVGFPGET+ DF+ T+D++ +  +  AF+F YS 
Sbjct: 292 YRSERFLRILREVRSAIPKAAITTDVIVGFPGETEADFQDTLDVLSEARFQAAFTFIYSR 351

Query: 370 RLGTPGSNMLEQVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-- 424
           R GTP ++  +QVD  V A   +RLL LQ+K+  ++   N+   G+I+EVL+   G++  
Sbjct: 352 RPGTPAADRDDQVDPEVVAQRYQRLLELQEKITLEE---NEKQEGRIVEVLVTAGGRKDE 408

Query: 425 -KGKLVGRSP---WLQSVVLNSKNHNIGDIIKVRIT 456
              ++ GR+     +   V        GD + VR+T
Sbjct: 409 ATARMSGRAQDNRLVHFAVPQGVKVRPGDFVTVRVT 444


>gi|255325173|ref|ZP_05366279.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Corynebacterium
           tuberculostearicum SK141]
 gi|255297738|gb|EET77049.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Corynebacterium
           tuberculostearicum SK141]
          Length = 520

 Score =  290 bits (741), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 161/460 (35%), Positives = 254/460 (55%), Gaps = 32/460 (6%)

Query: 18  VDQCIVPQRFF-VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA 76
           V+Q I   R + V+++GCQMNV+DS R+  +    GY       + DLIV NTC +RE A
Sbjct: 13  VEQTIADNRTYEVRTFGCQMNVHDSERISGLLEEAGYAAAGEGVEPDLIVFNTCAVRENA 72

Query: 77  AEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL 136
            +++Y  LG ++  K +       + + V GC+AQ + + +L  +P V+ V G      L
Sbjct: 73  DKRLYGTLGALKKTKENHPG----MQIAVGGCLAQKDKDTVLDNAPWVDAVFGTHNMAAL 128

Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
           P LLERAR      +    + D  E    V     R+     ++++  GC+  CTFC+VP
Sbjct: 129 PTLLERARHND---EAQVEIVDSLEAFPSVLPA-KRESAYAGWVSVSVGCNNTCTFCIVP 184

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW----RGKGLDGEKCTFSDLLY 252
             RG E  R    ++ E + L+D GV E+TLLGQNVNA+        +  ++  FS LL 
Sbjct: 185 SLRGKEEDRRPGDILAEVKALVDQGVSEVTLLGQNVNAYGVNFADPDMPRDRFAFSKLLR 244

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
            + +I+GL RLR+T+ HP + +  +I A  +   + P LH+P+QSGSD++LK M R +  
Sbjct: 245 EVGKIEGLERLRFTSPHPAEFTSDVIDAMAETPAVCPQLHMPLQSGSDKVLKDMRRSYRT 304

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
            ++ +I+D +R   P  AI++D IVGFPGET++DF+ TM+LV +  +A AF+F+YSPR G
Sbjct: 305 KKFLRILDEVRDKIPHAAITTDIIVGFPGETEEDFQDTMELVRRARFASAFTFQYSPRPG 364

Query: 373 TPGSNMLEQVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK---- 425
           TP + M +Q+ + V   + ERL+ LQ  ++ ++   N   +G  +E+L++  G  K    
Sbjct: 365 TPAAEMEDQIPKEVVQDRFERLVALQDSIQAEE---NKKLIGTDVELLVQAEGGRKNDET 421

Query: 426 ---------GKLVGRSPWLQSVVLNSKNHNIGDIIKVRIT 456
                    G+LV  +P        S     GD++  ++T
Sbjct: 422 HRMTGRARDGRLVHFTPVDSDGTDISAEIRPGDVVHTQVT 461


>gi|225027640|ref|ZP_03716832.1| hypothetical protein EUBHAL_01899 [Eubacterium hallii DSM 3353]
 gi|224954954|gb|EEG36163.1| hypothetical protein EUBHAL_01899 [Eubacterium hallii DSM 3353]
          Length = 483

 Score =  290 bits (741), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 172/446 (38%), Positives = 259/446 (58%), Gaps = 14/446 (3%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           F+ +++GCQMN  DS ++  +    GY + ++ + AD +  NTC +RE A  +VY  LG 
Sbjct: 47  FYDQTFGCQMNFKDSEKLNGILEDIGYVKADT-EKADFVYYNTCTVRENANVRVYGRLGA 105

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQA--EGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           ++N K    K+  ++++ + GC+ Q   E E++      V+VV G    ++L ELL    
Sbjct: 106 LKNYK----KKNPEMVIAMCGCMMQEPEEQEKVKTTFKFVDVVFGTHNIFKLAELLYECL 161

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G++ V   + V +K +++ I D   +RK G  A + I  GC+ FC++C+VPY RG E S
Sbjct: 162 SGRKRV---FDVWEKTDQI-IEDLPSDRKFGFKAGVNIMFGCNNFCSYCIVPYVRGRERS 217

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R    +V E +KL   GV E+ LLGQNVN++ GK L+    +F+ LL  + E++G+ R+R
Sbjct: 218 RKPEDIVAEVKKLASEGVVEVMLLGQNVNSY-GKNLEN-PISFAKLLTMVEEVEGIERIR 275

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           + TSHP+D+SD LI+       +  +LHLPVQSGS RILK MNR++T   Y +++D+IR+
Sbjct: 276 FMTSHPKDLSDELIEVMAHSKKICKHLHLPVQSGSSRILKLMNRKYTKEHYLELVDKIRT 335

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             PDIAI++D IVGFPGET++DF+ T+D+V K  Y  AF+F YS R GTP + M +QV +
Sbjct: 336 AVPDIAITTDIIVGFPGETEEDFQETLDVVRKAKYDSAFTFIYSKRSGTPAAKMPDQVPD 395

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSVVLNSK 443
           +V  ER   L K + E     N    G    VL+E+   K+   + GR      V     
Sbjct: 396 DVVHERFDRLLKVVNEAAKEQNGKLTGNTELVLVEEIDEKDDTMVTGRLSNNSVVHFKGD 455

Query: 444 NHNIGDIIKVRITDVKISTLYGELVV 469
              IG I+ V + + K     G L V
Sbjct: 456 ASLIGKIVPVVLEESKGFYYLGRLSV 481


>gi|300744000|ref|ZP_07073020.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Rothia dentocariosa M567]
 gi|300380361|gb|EFJ76924.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Rothia dentocariosa M567]
          Length = 505

 Score =  290 bits (741), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 157/450 (34%), Positives = 268/450 (59%), Gaps = 30/450 (6%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
            P+ + V+++GCQMNV+DS RM  +  + GY R    ++ DL+V NTC +RE A+ ++Y 
Sbjct: 16  TPRTYEVRTFGCQMNVHDSERMSGLLEANGYVRAAEGEEPDLVVFNTCAVRENASNRLYG 75

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            LG++ ++K  R  EG  + + V GC+AQ +   I+ ++P V+VV G      LP LLER
Sbjct: 76  HLGQLASVK--RRHEG--MQIAVGGCLAQKDQNTIIEKAPWVDVVFGTHNIGSLPTLLER 131

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRG--VTAFLTIQEGCDKFCTFCVVPYTRG 200
           AR          +  +  E L +       KR    + +++I  GC+  CTFC+VP  RG
Sbjct: 132 ARHNHE------AQAELLESLEVFPSTLPTKRDHVYSGWVSISVGCNNTCTFCIVPSLRG 185

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKG 259
            E  R    ++ E + L+D+G  E+TLLGQNVN++   G++ G++  FS LL +  +I+G
Sbjct: 186 KEKDRRPGDILAEVQALVDDGAIEVTLLGQNVNSY---GVEFGDRQAFSKLLRACGDIEG 242

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           L R+R+T+ HP   +D +I+A  +   +MP LH+P+QSGSD++LK M R + + ++  I+
Sbjct: 243 LERVRFTSPHPAMFTDDVIEAMAETPNVMPVLHMPLQSGSDKVLKDMRRSYRSKKFLGIL 302

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
           +++R   P   I++D IVGFPGE+++DF+ T+ +V++  ++ AF+F+YS R GTP + M 
Sbjct: 303 EKVRERIPHAVITTDIIVGFPGESEEDFQDTLRVVEQARFSSAFTFQYSIRPGTPAATME 362

Query: 380 EQVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLI----EKHGKEKGKLVGRS 432
            Q+ +++   + ERL+ LQ ++  ++   N   +G+ +E+++     +  ++  +L GR 
Sbjct: 363 NQIPKDIVQERYERLVALQDRIAGEE---NRKQLGKTVELMVVAESGRKAQQTHRLAGRG 419

Query: 433 PWLQ----SVVLNSKNHNIGDIIKVRITDV 458
           P  +    SV    +    GD++ V IT+ 
Sbjct: 420 PDQRLVHFSVPAGCEEPRPGDMVTVPITEA 449


>gi|298346683|ref|YP_003719370.1| putative tRNA 2-methylthioadenine synthetase [Mobiluncus curtisii
           ATCC 43063]
 gi|298236744|gb|ADI67876.1| possible tRNA 2-methylthioadenine synthetase [Mobiluncus curtisii
           ATCC 43063]
          Length = 498

 Score =  290 bits (741), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 165/456 (36%), Positives = 263/456 (57%), Gaps = 36/456 (7%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGY----------ERVNSMDD--ADLIVLNTC 70
            P+ + VK+ GCQMN +DS RM  +  + G+           R  +  D  ADL+VLNTC
Sbjct: 3   TPRTYLVKTLGCQMNEHDSERMAGLLDAAGWVPVAEVPQKAARATNAGDGGADLVVLNTC 62

Query: 71  HIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGP 130
            +RE A  K+Y  LG++ ++K +R      +++ V GC AQ EG +I+ R+P V+ V G 
Sbjct: 63  SVREAAGTKLYGHLGQLADVKRNR----PGMMIAVGGCFAQQEGSKIIDRAPWVDAVFGT 118

Query: 131 QTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190
                LP LL+RA   +   +    +E+  +    V   + R+   +A+++I  GC+  C
Sbjct: 119 HNIDALPVLLKRAEHNQ---EAAVEIEESLKVFPSVLPAH-RQSPASAWVSISVGCNNTC 174

Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSD 249
           TFC+VP  RG E  R+ + +V E + ++D G  E+TLLGQNVN++   G+  G +  F+D
Sbjct: 175 TFCIVPSLRGRERDRNPADIVAEVKAVVDAGALEVTLLGQNVNSY---GMSFGRRGAFAD 231

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
           LL  + +  GL RLR+T+ HP   ++ +I A  +   +MP LH P+QSGSDRIL+ M R 
Sbjct: 232 LLREVGKTPGLERLRFTSPHPAAFTEEVIAAMAETPTVMPSLHFPLQSGSDRILRQMRRS 291

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369
           + +  + +I+  +RS  P+ AI++D IVGFPGET+ DF+ T+D++ +  +  AF+F YS 
Sbjct: 292 YRSERFLRILREVRSAIPEAAITTDVIVGFPGETEVDFQDTLDVLSEARFQAAFTFIYSR 351

Query: 370 RLGTPGSNMLEQVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-- 424
           R GTP ++  +QVD  + A   +RLL LQ+K+  ++   N+   G+I+EVL+   G++  
Sbjct: 352 RPGTPAADRDDQVDPEIVAQRYQRLLELQEKITLEE---NEKQEGRIVEVLVTAGGRKDE 408

Query: 425 -KGKLVGRSP---WLQSVVLNSKNHNIGDIIKVRIT 456
              ++ GR+     +   V        GD + VR+T
Sbjct: 409 ATARMSGRAQDNRLVHFAVPQGIKVRPGDFVTVRVT 444


>gi|256825582|ref|YP_003149542.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Kytococcus sedentarius
           DSM 20547]
 gi|256688975|gb|ACV06777.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Kytococcus sedentarius
           DSM 20547]
          Length = 510

 Score =  290 bits (741), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 165/456 (36%), Positives = 268/456 (58%), Gaps = 37/456 (8%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDA------DLIVLNTCHIREKA 76
            P+ + V+++GCQMNV+DS R+  +    GY  +++++ A      D++V NTC +RE A
Sbjct: 5   TPKTYDVRTHGCQMNVHDSERLSGLLEGAGYTDLDAVEPAERPEVADVVVFNTCAVRENA 64

Query: 77  AEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL 136
           A K+Y  LG++R  K    +E  DL + V GC+AQ + + I+ R+P V+VV G      L
Sbjct: 65  ANKLYGNLGQLRQAK----RENPDLQIAVGGCLAQKDRDTIVARAPWVDVVFGTHNIGSL 120

Query: 137 PELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
           P LLERAR  +   V+   ++E     L        R    + +++I  GC+  CTFC+V
Sbjct: 121 PVLLERARHNQEAQVEILEALETFPSTLPT-----RRDSAYSGWVSISVGCNNTCTFCIV 175

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSL 254
           P  RG E  R    ++ E R L++ GV EITLLGQNVN +   G++ G++  FS LL + 
Sbjct: 176 PALRGKEKDRRPGDILAEVRALVEQGVVEITLLGQNVNTY---GVEFGDRQAFSKLLRAC 232

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
            EI+GL R+R+T+ HP   +D +I A  +   +MP LH+P+Q+GSD++LK M R + + +
Sbjct: 233 GEIEGLERVRFTSPHPAAFTDDVIDAMAETPNVMPSLHMPLQAGSDKVLKDMRRSYRSKK 292

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
           +  I+DR+R   P  AI++D IVGFPGET++DF  T+ +V+   ++ AF+F+YS R GTP
Sbjct: 293 FLGILDRVREQIPHAAITTDLIVGFPGETEEDFAETLRVVEASRFSSAFTFQYSIRPGTP 352

Query: 375 GSNMLEQVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIE----KHGKEKGK 427
            + M +QV + V   + +RL+ LQ+++  ++   N    G+ +EVL+     +   E  +
Sbjct: 353 AAEMADQVPKAVVQDRFDRLIELQERISWEE---NRTQEGRTVEVLVAPGEGRKDAETHR 409

Query: 428 LVGRSP-------WLQSVVLNSKNHNIGDIIKVRIT 456
           + GR+         L + + +++    GD++ V +T
Sbjct: 410 MSGRADDNRLVHFALPADLPDAERPRPGDMVTVEVT 445


>gi|260592003|ref|ZP_05857461.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella veroralis
           F0319]
 gi|260536287|gb|EEX18904.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella veroralis
           F0319]
          Length = 450

 Score =  290 bits (741), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 160/450 (35%), Positives = 273/450 (60%), Gaps = 15/450 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ ++++YGCQMNV DS  +  +    GY+  ++ D+AD I LNTC +RE A  K+Y  L
Sbjct: 10  KKLYIETYGCQMNVADSEVVASVMKMAGYDVCDNEDEADAIFLNTCSVRENAENKIYHRL 69

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             +    ++  K+G  L++ V GC+A+   +++++ +   N+V GP +Y  LP+++ +  
Sbjct: 70  DTL----HAEQKKGRKLILGVLGCMAERVRDDLIQ-NHFANLVCGPDSYLNLPDMIAQCE 124

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G   +D + S  + +  +     G NR   V+ F++I  GC+ FC +C+VP+TRG E S
Sbjct: 125 NGNNALDIELSTTETYRDVIPQRFGGNR---VSGFVSIMRGCNNFCHYCIVPFTRGRERS 181

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK----CTFSDLLYSLSEIKGL 260
           R +  ++ E + L D G  E+TLLGQNVN++ G   +G++     +F++LL  +++    
Sbjct: 182 RDVDSILKEVKDLHDKGFKEVTLLGQNVNSY-GLLPNGKRPENGTSFAELLRKVAQSVPD 240

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
           +R+R+TTS+P DM++ +IKA      L  ++H P QSGS+ +L+ MNR++T  +Y + +D
Sbjct: 241 MRVRFTTSNPEDMTEDIIKAVASEPNLCNHIHFPAQSGSNEVLRLMNRKYTREDYLRKVD 300

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML- 379
            IR + PD  +++D  +G+  ET+ D++ T+ L+ ++G+  AF FKYS R GT  +  L 
Sbjct: 301 TIRRLIPDCGLTTDIFIGYHNETEADYQETLSLMREVGFDSAFMFKYSERPGTYAAKHLP 360

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSV 438
           + V E+ K  RL  L +   E     N    G+  E+LIE+ GK  + +L+GR+P  ++V
Sbjct: 361 DNVSEDEKIRRLNELIRLQTEISAEQNKKDEGKEFEILIERFGKRSREQLMGRTPQNKAV 420

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           V+   NH+IG+ ++VRIT    +TL+GE V
Sbjct: 421 VIARGNHHIGEFVRVRITGSTSATLFGEEV 450


>gi|237709181|ref|ZP_04539662.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|237724341|ref|ZP_04554822.1| SAM/TRAM family methylase [Bacteroides sp. D4]
 gi|265752708|ref|ZP_06088277.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacteroides sp.
           3_1_33FAA]
 gi|229437210|gb|EEO47287.1| SAM/TRAM family methylase [Bacteroides dorei 5_1_36/D4]
 gi|229456877|gb|EEO62598.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|263235894|gb|EEZ21389.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacteroides sp.
           3_1_33FAA]
          Length = 456

 Score =  290 bits (741), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 166/451 (36%), Positives = 268/451 (59%), Gaps = 20/451 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F+++YGCQMNV DS  +  +    GY    ++D+AD + +NTC IR+ A +K+ + L
Sbjct: 18  KKLFIETYGCQMNVADSEVIASIMQMAGYHVCETLDEADAVFMNTCSIRDNAEQKILNRL 77

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
               ++K ++ +   +L+V V GC+A+   ++++     V++VVGP  Y  LP+L+    
Sbjct: 78  EFFHSMKKNKRR---NLIVGVLGCMAERVKDDLIENHH-VDLVVGPDAYLTLPDLVASVE 133

Query: 145 FGKRVVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            G++ ++ + S  + +  +  S + G +     ++ F++I  GC+ FC +C+VPYTRG E
Sbjct: 134 AGEKAINVELSTTETYREVIPSRICGNH-----ISGFVSIMRGCNNFCHYCIVPYTRGRE 188

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR +  +++E R L   G  E+TLLGQNVN++R +  +GE  TF  LL +++E    +R
Sbjct: 189 RSRDVESILNEVRDLAAKGYKEVTLLGQNVNSYRFEK-EGEIITFPMLLRTVAEAVPDMR 247

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP+DMSD  ++   +   +  ++HLPVQSGS RILK MNR++T   Y + +  I
Sbjct: 248 VRFTTSHPKDMSDETLQVIAETPNVCKHIHLPVQSGSSRILKLMNRKYTREWYLERVAAI 307

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML-EQ 381
           R + PD  +S+D   G+  ET++D + ++ L+ +  Y  AF FKYS R GT  S  L + 
Sbjct: 308 RRIIPDCGLSTDIFSGYHSETEEDHQESLSLMRECAYDSAFMFKYSERPGTYASKHLPDD 367

Query: 382 VDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQS 437
           V E VK  RL   + LQ +L  +    N   VG+  EV++E   K  + +L GR+   + 
Sbjct: 368 VPEEVKIRRLNEIIELQNRLSAES---NARDVGKTFEVMVEGVSKRSREQLFGRTQQNKV 424

Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           VV +  NH IGD + VRIT+   +TL GE V
Sbjct: 425 VVFDRGNHRIGDFVHVRITEASSATLKGEEV 455


>gi|283458476|ref|YP_003363102.1| 2-methylthioadenine synthetase [Rothia mucilaginosa DY-18]
 gi|283134517|dbj|BAI65282.1| 2-methylthioadenine synthetase [Rothia mucilaginosa DY-18]
          Length = 504

 Score =  290 bits (741), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 160/449 (35%), Positives = 263/449 (58%), Gaps = 30/449 (6%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+ + V+++GCQMNV+DS RM  +  + GY R       DL+V NTC +RE A+ ++Y  
Sbjct: 16  PRTYEVRTFGCQMNVHDSERMSGLLEANGYVRAEEGTQPDLVVFNTCAVRENASNRLYGN 75

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LG++  +K  R  +G  + + V GC+AQ + + I+ ++P V+VV G      LP LLERA
Sbjct: 76  LGQLAPVK--RAHKG--MQIAVGGCLAQKDQDAIIEKAPWVDVVFGTHNIGALPTLLERA 131

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRG--VTAFLTIQEGCDKFCTFCVVPYTRGI 201
           R          +  +  E L +       KR    + +++I  GC+  CTFC+VP  RG 
Sbjct: 132 RHNHE------AQAELLESLEVFPSTLPTKRDHVYSGWVSISVGCNNTCTFCIVPSLRGK 185

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGL 260
           E  R    ++ E + L+D+G  E+TLLGQNVN++   G++ G++  FS LL +  EI+GL
Sbjct: 186 EKDRRPGDILAEVQALVDDGAIEVTLLGQNVNSY---GVEFGDRQAFSKLLRACGEIEGL 242

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+T+ HP   +D +I A  +   +MP LH+P+QSGSD++LK M R + + ++  I++
Sbjct: 243 ERVRFTSPHPAMFTDDVIDAMAETPNVMPVLHMPLQSGSDKVLKDMRRSYRSKKFLNILE 302

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R   P+  I++D IVGFPGET++DF+ T+ +V++  ++ AF+F+YS R GTP + M  
Sbjct: 303 KVRERIPNAVITTDIIVGFPGETEEDFQDTLKVVEQARFSSAFTFQYSIRPGTPAATMEN 362

Query: 381 QVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG----KLVGRSP 433
           Q+ + V   + ERL+ LQ ++  ++   N   +G+ +E+++      K     +L GR P
Sbjct: 363 QIPKEVVQERYERLIALQDRIAGEE---NRKQLGKTVELMVVAEAGRKAEQTHRLSGRGP 419

Query: 434 WLQ----SVVLNSKNHNIGDIIKVRITDV 458
             +    SV    +    GD++ V IT+ 
Sbjct: 420 DQRLVHFSVPEGCETPRPGDMVTVPITEA 448


>gi|81760370|sp|Q8NP67|MIAB_CORGL RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|21324719|dbj|BAB99342.1| 2-methylthioadenine synthetase [Corynebacterium glutamicum ATCC
           13032]
          Length = 522

 Score =  290 bits (741), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 153/432 (35%), Positives = 250/432 (57%), Gaps = 25/432 (5%)

Query: 14  VSQIVDQCIVPQR-------FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIV 66
           V+Q   Q  +P+        + VK+YGCQMNV+DS R+  +    GY         DL+V
Sbjct: 6   VNQHPGQATLPETAEGQVRTYEVKTYGCQMNVHDSERLSGLLEEAGYVAAPEDTTPDLVV 65

Query: 67  LNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNV 126
            NTC +RE A  ++Y  LG +R++K    ++   + + V GC+AQ + + +++++P V+V
Sbjct: 66  FNTCAVRENADMRLYGTLGNLRSVK----EKNPGMQIAVGGCLAQKDKDTVVKKAPWVDV 121

Query: 127 VVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGC 186
           V G      LP LL+RA    +    +  + D  E+   V     R+     ++++  GC
Sbjct: 122 VFGTHNIGSLPTLLQRAEHNAQA---EVEIVDSLEQFPSVLSA-KRESAYAGWVSVSVGC 177

Query: 187 DKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE--- 243
           +  CTFC+VP  RG E  R    ++ E + L+D GV E+TLLGQNVNA+    +D E   
Sbjct: 178 NNTCTFCIVPSLRGKEQDRRPGDILAEVQALVDQGVTEVTLLGQNVNAYGVNFVDPELER 237

Query: 244 -KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
            +  FS LL +  EI+GL R+R+T+ HP + +  +I A  +   + P LH+P+QSGSD++
Sbjct: 238 DRSAFSKLLRACGEIEGLERVRFTSPHPAEFTSDVIDAMAETPNICPQLHMPLQSGSDKV 297

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           LK M R + + ++  I+D +R+  P  +I++D IVGFPGET++DF+AT+D+V K  +  A
Sbjct: 298 LKEMRRSYRSKKFLSILDEVRAKIPHASITTDIIVGFPGETEEDFQATLDVVKKARFTSA 357

Query: 363 FSFKYSPRLGTPGSNMLEQVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419
           ++F+YSPR GTP +    Q+ + V   + ERL+ +Q+++ E++   N   +G  +E+L++
Sbjct: 358 YTFQYSPRPGTPAAEYENQLPKEVVQERYERLMVVQEQVCEEE---NQKLIGTTVELLVQ 414

Query: 420 KHGKEKGKLVGR 431
             G  K     R
Sbjct: 415 AGGGRKNDATKR 426


>gi|19553154|ref|NP_601156.1| (dimethylallyl)adenosine tRNA methylthiotransferase
           [Corynebacterium glutamicum ATCC 13032]
 gi|62390789|ref|YP_226191.1| (dimethylallyl)adenosine tRNA methylthiotransferase
           [Corynebacterium glutamicum ATCC 13032]
 gi|41326127|emb|CAF20290.1| TRNA METHYLTHIOTRANSFERASE [Corynebacterium glutamicum ATCC 13032]
          Length = 526

 Score =  290 bits (741), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 153/432 (35%), Positives = 250/432 (57%), Gaps = 25/432 (5%)

Query: 14  VSQIVDQCIVPQR-------FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIV 66
           V+Q   Q  +P+        + VK+YGCQMNV+DS R+  +    GY         DL+V
Sbjct: 10  VNQHPGQATLPETAEGQVRTYEVKTYGCQMNVHDSERLSGLLEEAGYVAAPEDTTPDLVV 69

Query: 67  LNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNV 126
            NTC +RE A  ++Y  LG +R++K    ++   + + V GC+AQ + + +++++P V+V
Sbjct: 70  FNTCAVRENADMRLYGTLGNLRSVK----EKNPGMQIAVGGCLAQKDKDTVVKKAPWVDV 125

Query: 127 VVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGC 186
           V G      LP LL+RA    +    +  + D  E+   V     R+     ++++  GC
Sbjct: 126 VFGTHNIGSLPTLLQRAEHNAQA---EVEIVDSLEQFPSVLSA-KRESAYAGWVSVSVGC 181

Query: 187 DKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE--- 243
           +  CTFC+VP  RG E  R    ++ E + L+D GV E+TLLGQNVNA+    +D E   
Sbjct: 182 NNTCTFCIVPSLRGKEQDRRPGDILAEVQALVDQGVTEVTLLGQNVNAYGVNFVDPELER 241

Query: 244 -KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
            +  FS LL +  EI+GL R+R+T+ HP + +  +I A  +   + P LH+P+QSGSD++
Sbjct: 242 DRSAFSKLLRACGEIEGLERVRFTSPHPAEFTSDVIDAMAETPNICPQLHMPLQSGSDKV 301

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           LK M R + + ++  I+D +R+  P  +I++D IVGFPGET++DF+AT+D+V K  +  A
Sbjct: 302 LKEMRRSYRSKKFLSILDEVRAKIPHASITTDIIVGFPGETEEDFQATLDVVKKARFTSA 361

Query: 363 FSFKYSPRLGTPGSNMLEQVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419
           ++F+YSPR GTP +    Q+ + V   + ERL+ +Q+++ E++   N   +G  +E+L++
Sbjct: 362 YTFQYSPRPGTPAAEYENQLPKEVVQERYERLMVVQEQVCEEE---NQKLIGTTVELLVQ 418

Query: 420 KHGKEKGKLVGR 431
             G  K     R
Sbjct: 419 AGGGRKNDATKR 430


>gi|256820151|ref|YP_003141430.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Capnocytophaga
           ochracea DSM 7271]
 gi|256581734|gb|ACU92869.1| RNA modification enzyme, MiaB family [Capnocytophaga ochracea DSM
           7271]
          Length = 482

 Score =  289 bits (740), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 172/459 (37%), Positives = 260/459 (56%), Gaps = 22/459 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ +++SYGCQMN  DS  +  +    GY   +++D+ADL+++NTC +REKA + +   L
Sbjct: 24  KKLYIESYGCQMNFSDSEIVASILSKAGYNTTDTVDEADLVLINTCSVREKAEQTIRKRL 83

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            +    K  +      + V V GC+A+      L    IV++VVGP  Y  LP LLE   
Sbjct: 84  EQFNVYKRKKPA----MKVGVLGCMAERVKHAFLEEEKIVDMVVGPDAYKDLPNLLEEVE 139

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G+  V+   S ++ +  ++ +    N   GVTAF++I  GCD  CTFC+VP+TRG E S
Sbjct: 140 EGREAVNVILSKDETYADIAPIRLNSN---GVTAFVSITRGCDNMCTFCIVPFTRGRERS 196

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNA--WRGKGL--DGEKCT---------FSDLL 251
           R    +++E   L   G  E+TLLGQNV++  W G GL  D  K +         F+ LL
Sbjct: 197 RDPYSILNEIADLQARGFKEVTLLGQNVDSYLWYGGGLKKDFSKASEMQQATAINFAKLL 256

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
             ++  +  +R+R++TS+P+DM+  +I        +  Y+HLPVQSGS+RILK+MNR HT
Sbjct: 257 DMVAIAQPEMRIRFSTSNPQDMTLDVIDTMAKHPNICKYIHLPVQSGSNRILKAMNRLHT 316

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
             EY  +ID IR   P+ AIS D I GFP ET++D + T+ L++ + Y   F F YS R 
Sbjct: 317 REEYFALIDSIRERIPECAISQDMIAGFPTETEEDHQDTLSLMEYVKYDFGFMFAYSERP 376

Query: 372 GTPGSNMLE-QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LV 429
           GT  +  +E  V E VK  RL  +    ++  +    A +G+ +EVLIE + K+  K  +
Sbjct: 377 GTLAARKIEDDVPEEVKKRRLAEIIDLQQKHSLYRTQAQIGKTVEVLIEGNSKKSDKEWM 436

Query: 430 GRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           GR+     VV   +++ IGD + V+ITD   +TL G+ V
Sbjct: 437 GRNSQNTVVVFPKEDYKIGDFVMVKITDCTSTTLIGKAV 475


>gi|304383561|ref|ZP_07366021.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella marshii DSM
           16973]
 gi|304335371|gb|EFM01641.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella marshii DSM
           16973]
          Length = 441

 Score =  289 bits (740), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 164/449 (36%), Positives = 260/449 (57%), Gaps = 15/449 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F+++YGCQMNV DS  +  +    GYE   S+++AD + LNTC +RE A  K+Y   
Sbjct: 2   KKLFIETYGCQMNVADSEVVASVMQMAGYEMCESIEEADAVFLNTCSVRENAENKIYH-- 59

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R+  L     K+   +L V+ GC+A+   ++++      ++V GP +Y  LP+L+ +A 
Sbjct: 60  -RLEALHAKSTKKHRVILGVL-GCMAERVRDDLIENHH-ADLVAGPDSYLNLPDLIAQAE 116

Query: 145 FGKRVVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            G++ ++ + S  + +  +    + G +     ++ F++I  GCD FC +C+VPYTRG E
Sbjct: 117 LGQKAINIELSKTETYRDIVPQRIMGNH-----ISGFVSIMRGCDNFCHYCIVPYTRGRE 171

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE-KCTFSDLLYSLSEIKGLV 261
            SR +  +V E   L + G  EITLLGQNVN++R +  DG  +  F  LL  ++     +
Sbjct: 172 RSRDIESIVKEVHDLQEKGFKEITLLGQNVNSYRFQPADGSSEIGFPQLLRHVARAFPKM 231

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R++T HP+DMSD  +    +   L  ++HLPVQSGS+++LK MNRR+TA  YR  +  
Sbjct: 232 RVRFSTPHPKDMSDETLHVIAEEPNLCNHIHLPVQSGSNKVLKLMNRRYTAEWYRDRVAA 291

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML-E 380
           +R + PD  +S+D  VG+ GE ++D R ++ L+++I Y  AF FKYS R GT  S  L +
Sbjct: 292 VRRIIPDCGLSTDIFVGYHGEEEEDHRQSLALMEEIVYDSAFMFKYSERPGTYASKHLPD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVV 439
            V E +K  RL  +           N    G++ EVL+E   K  + +L GR+   + VV
Sbjct: 352 NVPEEIKLRRLAEMIDLQTRMSAVANKKDEGKMFEVLVENFSKRSRQQLCGRTQQNKMVV 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
            +  NH+IG+ + VRIT    +TL GE+V
Sbjct: 412 FDKGNHHIGEFLNVRITGSTSATLLGEVV 440


>gi|238927480|ref|ZP_04659240.1| tRNA 2-methylthioadenine synthetase [Selenomonas flueggei ATCC
           43531]
 gi|238884762|gb|EEQ48400.1| tRNA 2-methylthioadenine synthetase [Selenomonas flueggei ATCC
           43531]
          Length = 437

 Score =  289 bits (740), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 168/445 (37%), Positives = 255/445 (57%), Gaps = 14/445 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R+ +  YGCQMN+ D+ RME    + GY R     DAD+I++NTC +RE A +KVY  +G
Sbjct: 4   RYKILVYGCQMNIADAERMEGQLQAAGYVRTEETADADVILINTCCVRETAEDKVYGKIG 63

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-ERAR 144
            I+ +K    +    L+  + GC+AQ EGE ++RR+P ++ V+G      L  ++ E A 
Sbjct: 64  EIKKVKERHPQ----LIFGITGCMAQKEGENLMRRAPHIDFVLGTGKVQELGRIVAEIAA 119

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
               VVD         E L I   G      ++A++ I  GC+ +CT+C+VPY RG E S
Sbjct: 120 KRTPVVDVALDARAVEEHLPIARSGT-----LSAWVPIMYGCNNYCTYCIVPYVRGRERS 174

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R   +VV E R+   +G  E+TLLGQNVN++   G D  +  F+DLL  +  ++G+ R+R
Sbjct: 175 RMPEEVVAEVRRAAADGYREVTLLGQNVNSY---GKDHGQADFADLLRMVDAVEGIRRVR 231

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           + TSHP+D+SD LI    +   +  ++HLPVQ GS+RILK+MNR +T  +YR+   R+R 
Sbjct: 232 FMTSHPKDISDKLIDTIKNGTHICEHIHLPVQYGSNRILKAMNRVYTVEQYRERARRVRE 291

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             P  ++++D IVGFPGET++DF  T+D + ++ Y  A++F YS R GTP + M  QV +
Sbjct: 292 ALPGASLTTDLIVGFPGETEEDFAETLDFLREMRYDAAYTFLYSKRSGTPAAAMAAQVPD 351

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVLNSK 443
            VK  RL  L     E   + N+       EV++E   K +     GR+   + V+    
Sbjct: 352 EVKHARLERLMAVQNEISRAINEGLRSAQAEVMVEGASKNDPAVWSGRTRTNKIVLFPHG 411

Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468
              +GD ++V+IT  +   L GE+V
Sbjct: 412 AERVGDFVQVKITQPQTWVLKGEVV 436


>gi|218886426|ref|YP_002435747.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Desulfovibrio
           vulgaris str. 'Miyazaki F']
 gi|218757380|gb|ACL08279.1| RNA modification enzyme, MiaB family [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 478

 Score =  289 bits (740), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 179/484 (36%), Positives = 261/484 (53%), Gaps = 56/484 (11%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           F + ++GCQMNV DS  +     ++G+     +  A + ++NTC +R+K  +KVYS LGR
Sbjct: 6   FHILTFGCQMNVNDSDWLARALVARGFTEA-PLGKARVNIVNTCSVRDKPEQKVYSVLGR 64

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER--AR 144
           IR       ++  D   VV GCVAQ  G     R P V +V G       P+ +ER  A 
Sbjct: 65  IRQA----TRKLPDAFAVVGGCVAQQIGSGFFTRFPQVRLVFGGDGSSMAPQAIERLCAE 120

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G R+   D+S E+  ER + +D G       +AF+ I +GCD FC +C+VPYTRG + S
Sbjct: 121 PGLRLSLLDFS-EEYPERDAQLDAGPVPP---SAFVNIMQGCDNFCAYCIVPYTRGRQKS 176

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL---------DGEKCTFSDLLYSLS 255
           R+   VV E  +L++ G  EITLLGQNVN++              DG   TF++LL+ ++
Sbjct: 177 RAADAVVRECAELVERGAKEITLLGQNVNSYGQDAEAARQATVAGDGNAVTFAELLHRVA 236

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
            + GL RLR+ T HP+D++  +I A G LD L P LHLP+QSGSDRILK+M R++    Y
Sbjct: 237 ALPGLARLRFVTPHPKDIAPEVIDAFGTLDNLCPRLHLPMQSGSDRILKAMGRKYDMARY 296

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
             I+ R+++ RPDI +S+D IVGFPGET+ DF  T+  +  +G+A +FSF YS R GT  
Sbjct: 297 MDIVHRLKAARPDIQLSTDIIVGFPGETEQDFEDTLSAMRAVGFAASFSFCYSDRPGTRA 356

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDAC----VGQIIEVLIEKHGKEKGKLV-- 429
             +  ++D   KA RL     +L+E Q  + + C    VG    VL++   ++ G     
Sbjct: 357 EMLPGKLDAAEKAARL----ARLQEWQNDYTEQCLRNMVGLHTMVLLDGMSRKPGMATPE 412

Query: 430 -------------------GRSPWLQS--VVLNSKNHN-----IGDIIKVRITDVKISTL 463
                              GR P+ Q+  VV+  +        +G I+ V I + K  +L
Sbjct: 413 SHEGVHDGATGTPGGESWQGRDPYGQAVNVVMPPRTEGGPEGWLGRIVPVTIVEAKKHSL 472

Query: 464 YGEL 467
            G L
Sbjct: 473 RGVL 476


>gi|225572114|ref|ZP_03780978.1| hypothetical protein RUMHYD_00408 [Blautia hydrogenotrophica DSM
           10507]
 gi|225040448|gb|EEG50694.1| hypothetical protein RUMHYD_00408 [Blautia hydrogenotrophica DSM
           10507]
          Length = 488

 Score =  289 bits (740), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 169/447 (37%), Positives = 255/447 (57%), Gaps = 18/447 (4%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           F V ++GCQMN  DS ++  +    GYE+ +S ++AD ++ NTC +RE A  +VY  LG 
Sbjct: 55  FCVNTFGCQMNARDSEKLVGILEQAGYEKSDS-EEADFVLYNTCTVRENANLRVYGRLGH 113

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           +  LK    K+   + + + GC+ Q     E+I +    V+++ G    Y+ PELL    
Sbjct: 114 LNRLK----KKNPHMRIALCGCMMQEAHVVEKIKKSYSFVDLIFGTHNLYKFPELLANML 169

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
              R++   +   D+       D  Y  K GV        GC+ FC++C+VPY RG E S
Sbjct: 170 ASDRMIIDIWEGTDQIVEDLPTDRKYPFKSGVNIMF----GCNNFCSYCIVPYVRGRERS 225

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R    ++ E  KL+ +GV E+ LLGQNVN++ GK LD E  +F+ LL  + +++GL R+R
Sbjct: 226 REPKAIIREIEKLVADGVREVMLLGQNVNSY-GKTLD-EPVSFARLLEEVEQVEGLERIR 283

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           + TSHP+D+SD LI+       +  +LHLP+QSGS RILK MNRR+    Y +++++IR+
Sbjct: 284 FMTSHPKDLSDELIQVMAKSQKICRHLHLPLQSGSSRILKEMNRRYDQERYLELVEKIRA 343

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             PDI++++D IVGFPGET+ DF  T+ +VD++GY  AF+F YS R GTP + M +QV +
Sbjct: 344 AMPDISLTTDLIVGFPGETESDFEETLKVVDQVGYDTAFTFIYSKRSGTPAAAMEDQVPD 403

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK---HGKEKGKLVGRSPWLQSVVLN 441
            V  ER   L K ++E+    +   +G   EVL+E+   HG  +G L GR      V   
Sbjct: 404 EVVKERFDRLLKLVQERGRQESSRFLGTNQEVLVEEVSHHG--EGLLTGRMGQNLLVHFP 461

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
            +   IG  + VR+   K     GE +
Sbjct: 462 GEKELIGKTVTVRLEQCKGFYYIGEKI 488


>gi|145295854|ref|YP_001138675.1| (dimethylallyl)adenosine tRNA methylthiotransferase
           [Corynebacterium glutamicum R]
 gi|229890500|sp|A4QEV7|MIAB_CORGB RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|140845774|dbj|BAF54773.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 526

 Score =  289 bits (739), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 156/434 (35%), Positives = 255/434 (58%), Gaps = 29/434 (6%)

Query: 14  VSQIVDQCIVPQR-------FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDA--DL 64
           V+Q   Q  +P+        + VK+YGCQMNV+DS R+  +    GY  V + +DA  DL
Sbjct: 10  VNQHPGQATLPETAEGQVRTYEVKTYGCQMNVHDSERLSGLLEEAGY--VAAPEDATPDL 67

Query: 65  IVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIV 124
           +V NTC +RE A  ++Y  LG +R++K    ++   + + V GC+AQ + + +++++P V
Sbjct: 68  VVFNTCAVRENADMRLYGTLGNLRSVK----EKNPGMQIAVGGCLAQKDKDTVVKKAPWV 123

Query: 125 NVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQE 184
           +VV G      LP LL+RA    +    +  + D  E+   V     R+     ++++  
Sbjct: 124 DVVFGTHNIGSLPTLLQRAEHNAQA---EVEIVDSLEQFPSVLPA-KRESAYAGWVSVSV 179

Query: 185 GCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE- 243
           GC+  CTFC+VP  RG E  R    ++ E + L+D GV E+TLLGQNVNA+    +D E 
Sbjct: 180 GCNNTCTFCIVPSLRGKEQDRRPGDILAEVQALVDQGVTEVTLLGQNVNAYGVNFVDPEL 239

Query: 244 ---KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300
              +  FS LL +  EI+GL R+R+T+ HP + +  +I A  +   + P LH+P+QSGSD
Sbjct: 240 ERDRSAFSKLLRACGEIEGLERVRFTSPHPAEFTSDVIDAMAETPNICPQLHMPLQSGSD 299

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
           ++LK M R + + ++  I+D +R+  P  +I++D IVGFPGET++DF+AT+D+V K  + 
Sbjct: 300 KVLKEMRRSYRSKKFLSILDEVRAKIPHASITTDIIVGFPGETEEDFQATLDVVKKARFT 359

Query: 361 QAFSFKYSPRLGTPGSNMLEQVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVL 417
            A++F+YSPR GTP +    Q+ + V   + ERL+ +Q+++ E++   N   +G  +E+L
Sbjct: 360 SAYTFQYSPRPGTPAAEYENQLPKEVVQERYERLMVVQEQVCEEE---NQKLIGTTVELL 416

Query: 418 IEKHGKEKGKLVGR 431
           ++  G  K     R
Sbjct: 417 VQAGGGRKNDATKR 430


>gi|256844844|ref|ZP_05550302.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Fusobacterium sp.
           3_1_36A2]
 gi|294785875|ref|ZP_06751163.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Fusobacterium sp. 3_1_27]
 gi|256718403|gb|EEU31958.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Fusobacterium sp.
           3_1_36A2]
 gi|294487589|gb|EFG34951.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Fusobacterium sp. 3_1_27]
          Length = 435

 Score =  289 bits (739), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 158/441 (35%), Positives = 262/441 (59%), Gaps = 16/441 (3%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           +YGCQMNV +S +++ +F + GY+    +D+AD + LNTC +RE AA +++  LG ++ L
Sbjct: 8   TYGCQMNVNESAKIKKIFQNLGYDVTEEIDNADAVFLNTCTVREGAATQIFGKLGELKAL 67

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
           K  R       ++ V GC AQ +GEE++++ PI+++V+G Q   R+P+ +E+    +   
Sbjct: 68  KEKR-----GTIIGVTGCFAQEQGEELVKKFPIIDIVMGNQNIGRIPQAIEKIENNESTH 122

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
           +     ED+       + G ++    TA ++I  GC+ FCTFC+VPY RG E S  L ++
Sbjct: 123 EVYTDNEDELPPRLDAEFGSDQ----TASISITYGCNNFCTFCIVPYVRGRERSVPLEEI 178

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270
           V +  + +  G  EI LLGQNVN++     +G+   F+ LL  + +++G   +R+ + HP
Sbjct: 179 VKDVEQYVKKGAKEIVLLGQNVNSYGKDFKNGD--NFAKLLDEICKVEGDYIVRFVSPHP 236

Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330
           RD +D +I      D +   LHLP+QSGS +IL+ M R +T  +Y  ++D+I+S  P +A
Sbjct: 237 RDFTDDVIDVIAKNDKISKCLHLPLQSGSSQILRKMGRGYTKEKYLALVDKIKSKIPGVA 296

Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER 390
           +++D IVGFPGET++DF  T+D+V K+ +  ++ F YS R GT  + M  Q++E VK ER
Sbjct: 297 LTADIIVGFPGETEEDFLDTIDVVQKVSFDNSYMFMYSIRKGTKAATMDNQIEEAVKKER 356

Query: 391 LLCLQKKLREQQVSFNDAC--VGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNI- 447
           L  L +   + + SF ++     +I++VL+E   K+  +++        VVL   N  + 
Sbjct: 357 LQRLME--VQNKCSFEESSKYKDRIVKVLVEGSSKKNKEVLSGRTSTNKVVLFKGNLGLK 414

Query: 448 GDIIKVRITDVKISTLYGELV 468
           G  + V+I + K  TLYGE+V
Sbjct: 415 GQFVNVKINECKTWTLYGEIV 435


>gi|289758861|ref|ZP_06518239.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|289714425|gb|EFD78437.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
          Length = 423

 Score =  289 bits (739), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 151/377 (40%), Positives = 228/377 (60%), Gaps = 20/377 (5%)

Query: 23  VPQRFF-VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
            P R + V++YGCQMNV+DS R+  +  + GY R     +AD++V NTC +RE A  ++Y
Sbjct: 55  APARTYQVRTYGCQMNVHDSERLAGLLEAAGYRRATDGSEADVVVFNTCAVRENADNRLY 114

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             L  +      R +   D+ + V GC+AQ + + +LRR+P V+VV G      LP LLE
Sbjct: 115 GNLSHL----APRKRANPDMQIAVGGCLAQKDRDAVLRRAPWVDVVFGTHNIGSLPTLLE 170

Query: 142 RARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           RAR  K   V+   +++     L       +R+    A+++I  GC+  CTFC+VP  RG
Sbjct: 171 RARHNKVAQVEIAEALQQFPSSLP-----SSRESAYAAWVSISVGCNNSCTFCIVPSLRG 225

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW----RGKGLDGEKCTFSDLLYSLSE 256
            E+ RS + ++ E R L+++GV E+TLLGQNVNA+        L   +  F++LL +  +
Sbjct: 226 REVDRSPADILAEVRSLVNDGVLEVTLLGQNVNAYGVSFADPALPRNRGAFAELLRACGD 285

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           I GL R+R+T+ HP + +D +I+A      + P LH+P+QSGSDRIL++M R + A  Y 
Sbjct: 286 IDGLERVRFTSPHPAEFTDDVIEAMAQTRNVCPALHMPLQSGSDRILRAMRRSYRAERYL 345

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
            II+R+R+  P  AI++D IVGFPGET++DF AT+D+V +  +A AF+F+YS R GTP +
Sbjct: 346 GIIERVRAAIPHAAITTDLIVGFPGETEEDFAATLDVVRRARFAAAFTFQYSKRPGTPAA 405

Query: 377 NMLEQVDENVKAERLLC 393
            +     +   AE  LC
Sbjct: 406 QL-----DGTAAESRLC 417


>gi|319441566|ref|ZP_07990722.1| (dimethylallyl)adenosine tRNA methylthiotransferase
           [Corynebacterium variabile DSM 44702]
          Length = 529

 Score =  289 bits (739), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 154/422 (36%), Positives = 249/422 (59%), Gaps = 23/422 (5%)

Query: 23  VPQRFF-VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
            P R + V+++GCQMNV+DS R+  +     Y  V   D  D+IV NTC +RE A  ++Y
Sbjct: 20  TPARTYEVRTFGCQMNVHDSERLSGLLEDSDYVPVGEGDTPDVIVFNTCAVRENADNRLY 79

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LG+++ +K+S       + + V GC+AQ + + ++ R+P V+VV G      LP LL 
Sbjct: 80  GTLGQLKKVKDSHPG----MQIAVGGCMAQKDKDTVVSRAPWVDVVFGTHNMGSLPTLLS 135

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           R+    R    +  + D  E+   V     R+     ++++  GC+  CTFC+VP  RG 
Sbjct: 136 RSAHNSRA---EVEIVDALEQFPSVLPA-KRESAYAGWVSVSVGCNNTCTFCIVPSLRGK 191

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW----RGKGLDGEKCTFSDLLYSLSEI 257
           E  R    ++ E + L+D GV E+TLLGQNVNA+        L+ ++  FS LL +  EI
Sbjct: 192 EQDRRPGDILAEVKALVDQGVTEVTLLGQNVNAYGVHFSDPSLERDRSAFSKLLRACGEI 251

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
           +GL RLR+T+ HP + +D +I A  +  V+ P LH+P+QSGSD++LK M R + + ++  
Sbjct: 252 EGLERLRFTSPHPAEFTDDVIDAMAETPVVCPQLHMPLQSGSDKVLKDMRRSYRSTKFLG 311

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
           I+D++R   PD AI++D IVGFPGET++DF+ T+ +V++  +  A++F+YSPR GTP + 
Sbjct: 312 ILDKVRDRLPDAAITTDIIVGFPGETEEDFQETLRVVEESRFTSAYTFQYSPRPGTPAAE 371

Query: 378 MLEQVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG----KLVG 430
           +  QV + V   + ERL  LQ+++  ++   N   +G  +E+L++  G  K     ++ G
Sbjct: 372 LDNQVPKAVVQDRYERLEELQERISGEE---NAKQIGCTVELLVQAGGGRKNDRTRRMTG 428

Query: 431 RS 432
           R+
Sbjct: 429 RA 430


>gi|257439844|ref|ZP_05615599.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Faecalibacterium
           prausnitzii A2-165]
 gi|257197753|gb|EEU96037.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Faecalibacterium
           prausnitzii A2-165]
          Length = 460

 Score =  289 bits (739), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 179/449 (39%), Positives = 256/449 (57%), Gaps = 16/449 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
            P   FV SYGCQ NV D  R++ +    GY   +  +DADLI+ NTC +RE A ++V+ 
Sbjct: 22  TPPLAFVHSYGCQQNVNDGERIKGVLVDIGYGLCDKPEDADLILFNTCAVREHAEQRVFG 81

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVA-QAEGEEILRRS-PIVNVVVGPQTYYRLPELL 140
            +G ++ LK    K G  L++ + GC+A Q    E LR+S P V++V G      LP+L+
Sbjct: 82  NVGALKGLKEK--KRG--LMIGLCGCMANQKHVVEKLRKSYPYVDLVFGVDGIDTLPQLI 137

Query: 141 -ERARFGKRVVDTDYSVEDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
            ++ +  KRV+       +  +R  IV+     R+    A+L I  GCD FCT+C+VPY 
Sbjct: 138 AQKLQKHKRVL------MEPAQRPVIVENIPIRRESEFRAWLPIMYGCDNFCTYCIVPYV 191

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258
           RG E SR    ++ E R L++ G  EITLLGQNVN++ GKGL+ E+  F+DLL  L  + 
Sbjct: 192 RGREKSRKPGDILAEFRGLVEAGYKEITLLGQNVNSY-GKGLE-EQVDFADLLNLLCAVP 249

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           G  ++R+ TSHP+D S  LI        L  +LHLPVQ GSD +LK MNR +T  +Y ++
Sbjct: 250 GDYQIRFMTSHPKDASHKLIDTIAAQPHLCKHLHLPVQCGSDELLKKMNRHYTIGQYMEL 309

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           I+  R   P I  SSD IVGFPGET++DF+ T++LV K+GY Q F+F YS R GT  + M
Sbjct: 310 IEYARKKVPGITFSSDIIVGFPGETEEDFQDTLELVKKVGYMQLFTFIYSKRTGTKAAEM 369

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSV 438
            +      K +R+  L K   E  +      VGQ + VL+E +G+  G L GR     +V
Sbjct: 370 PDPTPRAEKTDRMTRLLKVQDEIAMDLVRQQVGQTVRVLVEGYGRSDGTLSGRLDNNLTV 429

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGEL 467
              +    +G   +V +T  + + L GEL
Sbjct: 430 EFAADPALMGSYAQVHLTGARATVLLGEL 458


>gi|168702635|ref|ZP_02734912.1| probable MiaB protein-putative tRNA-thiotransferase [Gemmata
           obscuriglobus UQM 2246]
          Length = 492

 Score =  289 bits (739), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 175/465 (37%), Positives = 268/465 (57%), Gaps = 30/465 (6%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           Q+ ++++ GCQMNV DS  +      +GY+  +    AD+++ NTC +RE A +K YS L
Sbjct: 3   QKVYIETVGCQMNVLDSELVIGALRKRGYDLTDDPAAADVLLFNTCSVREHAEDKTYSAL 62

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR+R +K  R K G   ++ V GC+AQ + + I +R+P V++VVG      +P+L+++ R
Sbjct: 63  GRVRLVK--RDKPGA--VIGVLGCMAQKDQDAIRKRAPYVDMVVGTGQLGAVPDLVDKVR 118

Query: 145 FGK---------RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
             +         R       VE  F           R     A++ IQ GCDKFCT+CVV
Sbjct: 119 ATREPQLAVSLGRADGGRNEVEASFVSYDPARDPSMRPTPFQAYVRIQIGCDKFCTYCVV 178

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
           P TRG E SR    + +E R+L+D G  E+TLLGQ VN++  +  D  +   SDL+  + 
Sbjct: 179 PSTRGPEQSRPPEHIWNEVRQLVDQGCKEVTLLGQTVNSYVYESGD-TRTRLSDLIAGMH 237

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
           ++ GL R+++ T++P+DM+D L+ A  DL  ++ YLH+PVQSG D +LK M R +TA  Y
Sbjct: 238 DVAGLERIKFVTNYPKDMTDDLLDAVRDLPKVVKYLHVPVQSGCDEVLKRMKRSYTAAYY 297

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
            +++ R R + P +++SSDFIVGF GET++ F+ +M+LV +  +  +F FKYS R GT  
Sbjct: 298 MEMLARCRELVPGVSVSSDFIVGFCGETEESFQKSMELVREARFKNSFIFKYSERGGTKA 357

Query: 376 SNML-EQVDENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLI------EKHGKEK 425
           +    + V E VK  R   LL +Q    E     + A VG+++EVL+      E+  +E+
Sbjct: 358 AERYPDDVPEEVKKRRNNDLLAVQN---ENSRLDHRAQVGRVVEVLVEGPSRREQSNRER 414

Query: 426 G---KLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
           G   +L GRS     VV +     IG+ +KV +TD    TLYG++
Sbjct: 415 GATMQLTGRSMADHIVVFDGTERLIGETVKVTVTDASPFTLYGDV 459


>gi|91216870|ref|ZP_01253834.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Psychroflexus torquis
           ATCC 700755]
 gi|91185031|gb|EAS71410.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Psychroflexus torquis
           ATCC 700755]
          Length = 485

 Score =  289 bits (739), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 172/457 (37%), Positives = 259/457 (56%), Gaps = 22/457 (4%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
            +++SYGC MN  DS  +  +   +GY   N + +ADL+++NTC IR+KA + V   L +
Sbjct: 26  LYIESYGCAMNFSDSEIVASILNKEGYNTTNELSEADLVLVNTCSIRDKAEQTVRKRLEK 85

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
              +K    K    + V V GC+A+    + L    IV++VVGP  Y  LP LLE    G
Sbjct: 86  YNAVK----KINPSMKVGVLGCMAERLKSKFLEEEKIVDLVVGPDAYKDLPNLLEEVESG 141

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           +  ++   S E+ +  +S V    N   GV+AF++I  GCD  CTFC+VP+TRG E SR 
Sbjct: 142 RDAINVILSKEETYGDISPVRLQSN---GVSAFVSITRGCDNMCTFCIVPFTRGRERSRD 198

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNA--WRGKGL--------DGEKCT---FSDLLYS 253
              ++DE   L   G  EITLLGQNV++  W G GL        + +K T   FS LL  
Sbjct: 199 PLSIIDEVNDLWSKGFKEITLLGQNVDSYLWYGGGLKKDFKSATEMQKATAVGFSHLLDI 258

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
           +++ +  +R+R++TS+P+DM+  +I+     + +  Y+HLPVQSGSDRILK MNR HT  
Sbjct: 259 VAKAQPGMRIRFSTSNPQDMTIDVIEVMAKHNNICDYIHLPVQSGSDRILKKMNRLHTRE 318

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
           EY ++ID IR + P   IS D I+GFP ET++D + T+ L++ + Y   + F YS R GT
Sbjct: 319 EYFRLIDNIRKIIPGCGISQDMIIGFPSETEEDHKDTLSLMENVKYNFGYMFAYSERPGT 378

Query: 374 PGSNMLE-QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGR 431
            G+   E  + E  K +RL  +    ++      +  +G+I EVL+EK  K+   +  GR
Sbjct: 379 LGAKKFEDDIPEATKKKRLQEIIDVQQKHSRFRTEQHLGKIEEVLVEKESKKSDSQWSGR 438

Query: 432 SPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           +    +VV   K++ +GD + V++     +TL GE V
Sbjct: 439 NTQNTTVVFPKKDYKLGDYVLVKMEKCTSATLIGEPV 475


>gi|237741509|ref|ZP_04571990.1| tRNA 2-methylthioadenosine synthase [Fusobacterium sp. 4_1_13]
 gi|229429157|gb|EEO39369.1| tRNA 2-methylthioadenosine synthase [Fusobacterium sp. 4_1_13]
          Length = 435

 Score =  289 bits (739), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 158/441 (35%), Positives = 262/441 (59%), Gaps = 16/441 (3%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           +YGCQMNV +S +++ +F + GY+    +D+AD + LNTC +RE AA +++  LG ++ L
Sbjct: 8   TYGCQMNVNESAKIKKIFQNLGYDVTEEIDNADAVFLNTCTVREGAATQIFGKLGELKAL 67

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
           K  R       ++ V GC AQ +GEE++++ PI+++V+G Q   R+P+ +E+    +   
Sbjct: 68  KEKR-----GTIIGVTGCFAQEQGEELVKKFPIIDIVMGNQNIGRIPQAIEKIENNESTH 122

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
           +     ED+       + G ++    TA ++I  GC+ FCTFC+VPY RG E S  L ++
Sbjct: 123 EVYTDNEDELPPRLDAEFGSDQ----TASISITYGCNNFCTFCIVPYVRGRERSVPLEEI 178

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270
           V +  + +  G  EI LLGQNVN++     +G+   F+ LL  + +++G   +R+ + HP
Sbjct: 179 VKDVEQYVKKGAKEIVLLGQNVNSYGKDFKNGD--NFAKLLDEICKVEGDYIVRFVSPHP 236

Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330
           RD +D +I      D +   LHLP+QSGS +IL+ M R +T  +Y  ++D+I+S  P +A
Sbjct: 237 RDFTDDVIDVIAKNDKISKCLHLPLQSGSSQILRKMGRGYTKEKYLALVDKIKSKIPGVA 296

Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER 390
           +++D IVGFPGET++DF  T+D+V K+ +  ++ F YS R GT  + M  Q++E VK ER
Sbjct: 297 LTADIIVGFPGETEEDFLDTIDVVQKVSFDNSYMFMYSIRKGTKAATMDNQIEEAVKKER 356

Query: 391 LLCLQKKLREQQVSFNDAC--VGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNI- 447
           L  L +   + + SF ++     +I++VL+E   K+  +++        VVL   N  + 
Sbjct: 357 LQRLME--VQNKCSFEESSKYKDRIVKVLVEGPSKKNKEVLSGRTSTNKVVLFKGNLGLK 414

Query: 448 GDIIKVRITDVKISTLYGELV 468
           G  + V+I + K  TLYGE+V
Sbjct: 415 GQFVNVKINECKTWTLYGEIV 435


>gi|269956048|ref|YP_003325837.1| RNA modification enzyme, MiaB family [Xylanimonas cellulosilytica
           DSM 15894]
 gi|269304729|gb|ACZ30279.1| RNA modification enzyme, MiaB family [Xylanimonas cellulosilytica
           DSM 15894]
          Length = 543

 Score =  288 bits (738), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 165/421 (39%), Positives = 258/421 (61%), Gaps = 30/421 (7%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIV----LNTCHIREKAAEKVYS 82
           + V++ GCQMNV+DS  M  M    GY R +  DDA        +NTC +RE AA ++Y 
Sbjct: 23  YVVRTLGCQMNVHDSEHMAGMLEQAGYVRASQADDAANAADVVVINTCAVRENAATRLYG 82

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            LG++ ++K +R      + + V GC+AQ +  EI+ ++P V+VV G      LP LLER
Sbjct: 83  NLGQLASIKAARP----GMQIAVGGCLAQKDRGEIVAKAPYVDVVFGTHNLDALPVLLER 138

Query: 143 ARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTA-FLTIQEGCDKFCTFCVVPYTRG 200
           AR  +   V+   S++     L        R+  V A +++I  GC+  CTFC+VP+ RG
Sbjct: 139 ARHNEAAQVEIAESLQVFPSTLP------TRRESVYAGWVSISVGCNNTCTFCIVPHLRG 192

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKG 259
            E  R   +++ E + L+D G  E+TLLGQNVN++   G++ G++  F+ LL +  +I G
Sbjct: 193 KERDRRPGEILAEVQALVDAGAVEVTLLGQNVNSY---GVEFGDRGAFAKLLRACGQIAG 249

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           L R+R+T+ HP   +D +I A      +MP LH+P+QSGSDR+L++M R + + ++  I+
Sbjct: 250 LERVRFTSPHPAAFTDDVIDAMAQTPNVMPSLHMPLQSGSDRVLRAMRRSYRSEKFLGIL 309

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
           DR+R+  PD AI++D IVGFPGET++DF  T+ +V+   +A AF+F+YSPR GTP + M 
Sbjct: 310 DRVRAAMPDAAITTDLIVGFPGETEEDFAETLRVVEASRFASAFTFQYSPRPGTPAATMD 369

Query: 380 EQVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKG---KLVGRS 432
            Q+ + V   + ERLL LQ+++  ++ +   A VG+ +E+L+ E  GK+ G   +L GR+
Sbjct: 370 GQLPKEVVQERFERLLALQERISTEESA---AQVGRTVELLVTEGRGKKDGATHRLSGRA 426

Query: 433 P 433
           P
Sbjct: 427 P 427


>gi|302335738|ref|YP_003800945.1| RNA modification enzyme, MiaB family [Olsenella uli DSM 7084]
 gi|301319578|gb|ADK68065.1| RNA modification enzyme, MiaB family [Olsenella uli DSM 7084]
          Length = 455

 Score =  288 bits (738), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 177/458 (38%), Positives = 267/458 (58%), Gaps = 24/458 (5%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           +V + +FV+++GCQMN++DS R+  +    G   V   D+AD++V  TC +REKA   ++
Sbjct: 7   LVGKTYFVRTFGCQMNLHDSERVAGLLDDCGCVAVQGPDEADIVVFMTCSVREKADTHLF 66

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL- 140
              G   NL        G  +V V GC+AQ +G+ +    P V+VV G      +P LL 
Sbjct: 67  ---GEASNLVRLPRPPSGRRVVAVGGCIAQRDGDRLREHIPNVDVVFGTSALASVPALLV 123

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           E    G   V  D S E +     +     +R++   A++ I  GCD FCT+C+VP+ RG
Sbjct: 124 EALEEGGGRVHVDTSEEGRGFSAELPS---HREQDFHAWVPIMTGCDNFCTYCIVPHVRG 180

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E SR+  +VVDE  +L+ +GV EITLLGQNVN++ G+ L GE   F++LL ++ E  G+
Sbjct: 181 RERSRAFERVVDECARLVADGVREITLLGQNVNSY-GRDLYGEP-RFAELLQAVGE-TGV 237

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+T+S+P+D+S   I A      +MP+LHL VQSGS RILK+MNR +T   Y  +I 
Sbjct: 238 ERIRFTSSNPKDLSAETIAAMAGTPNVMPHLHLAVQSGSTRILKAMNRSYTREGYLDVIR 297

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
            I++  P IA+S+D IVGFPGET++DF  T+ LV+++G+A A++F YS R GTP + + +
Sbjct: 298 DIKAAIPGIALSTDIIVGFPGETEEDFLDTLSLVEEVGFASAYTFIYSRRPGTPAARITD 357

Query: 381 QVDENV---KAERLLCLQKKL-REQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWL 435
                V   + +RL  L ++L  E  V +     G  +E LIE   K+  + LVG SP  
Sbjct: 358 DTPREVIQGRFDRLASLVERLAHEANVPYQ----GSRVEALIEGASKKDDRVLVGHSPHN 413

Query: 436 QSVVLNSKNHN-----IGDIIKVRITDVKISTLYGELV 468
           Q+V+L+    +     +G +  V +T+ +   L GEL 
Sbjct: 414 QTVLLDLPEGSHAGDFVGTLCDVHVTEARTWYLRGELA 451


>gi|288801850|ref|ZP_06407292.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella melaninogenica
           D18]
 gi|302346093|ref|YP_003814446.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella melaninogenica
           ATCC 25845]
 gi|288335892|gb|EFC74325.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella melaninogenica
           D18]
 gi|302149644|gb|ADK95906.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella melaninogenica
           ATCC 25845]
          Length = 442

 Score =  288 bits (738), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 159/450 (35%), Positives = 273/450 (60%), Gaps = 15/450 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ ++++YGCQMNV DS  +  +    GY+   + D+AD I LNTC +RE A  K+Y+ L
Sbjct: 2   KKLYIETYGCQMNVADSEVVASVMKMAGYDVCENEDEADAIFLNTCSVRENAENKIYNRL 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             +    ++  K+G DL++ V GC+A+   +++++     N+V GP +Y  LP+++ +  
Sbjct: 62  EAL----HAEQKKGRDLILGVLGCMAERVRDDLIQNHH-ANLVCGPDSYLNLPDMIAQCE 116

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G   +D + S  + +  +     G NR   V+ F++I  GC+ FC +C+VP+TRG E S
Sbjct: 117 NGTNALDIELSTTETYRDVIPQRIGGNR---VSGFVSIMRGCNNFCHYCIVPFTRGRERS 173

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK----CTFSDLLYSLSEIKGL 260
           R +  ++ E + L D G  E+TLLGQNVN++ G   +G++     +F++LL+ +++    
Sbjct: 174 RDVESILKEVKDLHDKGFKEVTLLGQNVNSY-GLLPNGKRPENGVSFAELLHKVAQSVPD 232

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
           +R+R+TTS+P DM++ +I+A      L  ++H P QSGS+ +LK MNR++T  +Y + + 
Sbjct: 233 MRVRFTTSNPEDMTEDIIEAVATEPNLCNHIHFPAQSGSNSVLKVMNRKYTREDYLEKVA 292

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML- 379
            IR + PD  +++D  +G+  E+++DF+ T+ L+ ++G+  AF FKYS R GT  +  L 
Sbjct: 293 AIRRLVPDCGLTTDIFIGYHNESEEDFQQTLSLMREVGFDSAFMFKYSERPGTYAAKHLP 352

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSV 438
           + V E  K  RL  L +   E     N    G+  ++LIE+ GK  + +L+GR+P  ++V
Sbjct: 353 DNVSEEEKIRRLNELIRLQTEISAEQNKKDEGKEFDILIERFGKRSREQLMGRTPQNKAV 412

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           V+   NH+IG+ ++VRIT    +TL+GE V
Sbjct: 413 VMPRGNHHIGETVRVRITGSTSATLFGEEV 442


>gi|284044702|ref|YP_003395042.1| RNA modification enzyme, MiaB family [Conexibacter woesei DSM
           14684]
 gi|283948923|gb|ADB51667.1| RNA modification enzyme, MiaB family [Conexibacter woesei DSM
           14684]
          Length = 443

 Score =  288 bits (738), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 167/451 (37%), Positives = 251/451 (55%), Gaps = 28/451 (6%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +R+ V ++GCQMN +DS RM+ M  S GY      D ADLI+ NTC IRE A  +  + L
Sbjct: 2   KRYHVTTFGCQMNEHDSERMKGMLESLGYREAPDADVADLILFNTCSIREAADSRFKAHL 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           G  +  K  R     ++++ V GC AQ+  +E+  + P V+V  GP   ++L E L    
Sbjct: 62  GHAKRRKRER----PEVVIGVGGCWAQSVKDEVFEQFPFVDVAFGPGQVHKLAEFL---- 113

Query: 145 FGKRVVDTDYSVEDKFERLSIV-DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
                     + +  FE      D    R R    +  I  GC+  C++C+VP TRG ++
Sbjct: 114 -----TSESLTAQGYFEFEGFTGDLPEKRAREFQGWTQISVGCNMACSYCIVPSTRGRDV 168

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE---KCTFSDLLYSLSEIKGL 260
            R L  +V +  ++   GV E+TLLGQNVNA+ G+ L        TF+DLL ++  I G+
Sbjct: 169 GRPLGVLVADVERMASEGVTEVTLLGQNVNAY-GRDLHRRGFPSATFADLLSAVDAIDGI 227

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+RYT+ HP+DM + +I+AH +L+ L  ++HLP+QSGS R+LK+M R ++   Y   + 
Sbjct: 228 RRIRYTSPHPQDMKEDVIRAHAELEALCEHVHLPLQSGSSRVLKAMRRTYSRERYLDRVA 287

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
            +R   PD+AI++D IVGFPGETD+DF  T+ L +++ Y  AF+F YSPR  T  + + +
Sbjct: 288 LLREHVPDVAITTDIIVGFPGETDEDFAQTLSLCEEVAYDGAFTFVYSPRRETEAATLPD 347

Query: 381 QVDENVKAERL----LCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWL 435
           QV   VK ER+      +Q++ +E+   F    VG+ +EVL+E   + +  +L GRS   
Sbjct: 348 QVPHEVKVERMDRLVEVIQRRAKERAQRF----VGRTVEVLVEGPSRTDPTRLRGRSRH- 402

Query: 436 QSVVLNSKNHNIGDIIKVRITDVKISTLYGE 466
             VV  S     GD + V +      TL GE
Sbjct: 403 NKVVNFSGLAQPGDYVHVDVESATSQTLMGE 433


>gi|33861861|ref|NP_893422.1| 2-methylthioadenine synthetase [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
 gi|81575722|sp|Q7V0F7|MIAB_PROMP RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|33640229|emb|CAE19764.1| conserved hypothetical protein [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
          Length = 464

 Score =  288 bits (737), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 171/453 (37%), Positives = 263/453 (58%), Gaps = 23/453 (5%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           +++ ++GCQMN  DS RM       GY R      ADL++ NTC IR+ A +KVYSFLG+
Sbjct: 21  YWITTFGCQMNKADSERMAGTLEKMGYSRAIDELKADLVLYNTCTIRDSAQQKVYSFLGK 80

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
               K+S  K    L +VVAGC+AQ EGE +LRR P +++++GPQ    L  LLER   G
Sbjct: 81  QVKRKHSTPK----LKLVVAGCLAQQEGESLLRRVPELDLIMGPQHVNNLENLLERVDLG 136

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
            +VV T    E+ F    I +    R   +  ++ I  GC++ C++CVVP  RG E SR 
Sbjct: 137 NQVVAT----EETFISEDITNP--RRDSSICGWVNIIYGCNERCSYCVVPSVRGKEQSRY 190

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG------EKCTFSDLLYSLSEIKGL 260
              +  E   L  N   E+TLLGQN++A+ G+ L G      ++ + +DLLY + +++G+
Sbjct: 191 PDAIKSEIESLAHNNFKEVTLLGQNIDAY-GRDLPGTTKEGRKENSLTDLLYFIHDVEGI 249

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R++TSHP+  S  LI A  +LD +  + H+P QSG++ IL+ M R +T  +Y++II+
Sbjct: 250 KRIRFSTSHPKYFSKRLINACYELDKVCEHFHIPFQSGNNEILRLMARGYTIEKYKRIIE 309

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
            IR + P+ +I++D IV FPGET+  +R T+ L+  IG+ Q  +  YSPR  TP +    
Sbjct: 310 NIRQLMPNASITADAIVAFPGETETQYRETLKLISDIGFDQVMTAAYSPRPNTPAAFWDN 369

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQ-SV 438
           Q+ E VK ERL  + + +       N   +  I  VLIE  + K   +++GR+   + + 
Sbjct: 370 QIPEEVKKERLKEINELVETTSRKRNQRYLNNIESVLIEGLNPKNNAQMMGRTRTNRLTF 429

Query: 439 VLNSK----NHNIGDIIKVRITDVKISTLYGEL 467
           V  SK    N++ GD I V+IT+ +  +L G++
Sbjct: 430 VEISKNIEFNYSYGDEINVKITEARSFSLSGQI 462


>gi|254424981|ref|ZP_05038699.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Synechococcus sp. PCC
           7335]
 gi|196192470|gb|EDX87434.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Synechococcus sp. PCC
           7335]
          Length = 453

 Score =  288 bits (737), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 167/454 (36%), Positives = 270/454 (59%), Gaps = 23/454 (5%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +R+ V ++GCQMN  DS RM  +    G         AD+++ NTC IR+ A +KVYS+L
Sbjct: 5   RRYHVTTFGCQMNKADSERMAGILEKMGMRWEEDPLQADVVLYNTCTIRDSAEQKVYSYL 64

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           G+    +  R ++  +L +VVAGCVAQ EGE++LRR P ++VV+GPQ   +L  LL +A 
Sbjct: 65  GK----QAKRKRKDPNLTIVVAGCVAQQEGEQLLRRVPELDVVMGPQYANQLESLLAQAA 120

Query: 145 FGKRVVDTD--YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            G +VV TD  + +ED  +          R+  V+A++ +  GC++ CT+CVVP  RG+E
Sbjct: 121 QGSQVVATDPVHIMEDITKP--------RRESEVSAWVNVIYGCNERCTYCVVPGVRGLE 172

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG------EKCTFSDLLYSLSE 256
            SR+   +  E   L D G  E+TLLGQN++A+ G+ L G       + T +DLL+ + +
Sbjct: 173 QSRTKEAIRAEMAALGDQGYAEVTLLGQNIDAY-GRDLPGITSEGRRENTLTDLLHYVHD 231

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           + G+ R+R+ TSHPR  ++ L++A  +L  +  + H+P QSG++++LK+M R +T  +Y+
Sbjct: 232 VPGIERIRFATSHPRYFTERLVRACAELPKVCEHFHIPFQSGNNQVLKAMGRGYTREKYQ 291

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
           +II+ +R   PD +IS+D IV FPGET+  F+ T+ L+++I +    +  YSPR GTP +
Sbjct: 292 RIIETVRRYVPDASISADVIVAFPGETEAQFQDTLSLMEEIVFDMVNTAAYSPRPGTPAA 351

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWL 435
               Q+DE VK +RL  +   + +Q    +     ++  VL+E  + K+  +++GR+   
Sbjct: 352 EWTNQLDEEVKQDRLQRINHLVSQQAEVRSQRYQNRVETVLVEAINPKDPNQVMGRTRGN 411

Query: 436 QSVVLNSK-NHNIGDIIKVRITDVKISTLYGELV 468
           +    N   N   G I+ V IT+ +  +L GE V
Sbjct: 412 RLTFFNGDINLLKGQIVPVAITETRAFSLTGERV 445


>gi|51892897|ref|YP_075588.1| 2-methylthioadenine synthetase [Symbiobacterium thermophilum IAM
           14863]
 gi|81388796|sp|Q67NJ9|MIAB_SYMTH RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|51856586|dbj|BAD40744.1| 2-methylthioadenine synthetase [Symbiobacterium thermophilum IAM
           14863]
          Length = 470

 Score =  288 bits (737), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 174/454 (38%), Positives = 259/454 (57%), Gaps = 22/454 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R  ++++GCQMN +DS  M  +    GY +    DDADL++ NTC +RE A E  +  +G
Sbjct: 21  RVHIETFGCQMNEHDSEIMYGILAQMGYVKAQGPDDADLLLFNTCAVRESAVEHAFGRIG 80

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +++ LK +      DL++ V GCV Q EG  E I R  P ++++ G    +RLPEL+ERA
Sbjct: 81  QLKPLKYT----NPDLIIGVCGCVPQVEGQVERIKRMFPYLDLIFGTHNIHRLPELVERA 136

Query: 144 RFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           R  +  VVD   S+ D F  +        R+  + A++TI  GCDK CT+C+VP TRG E
Sbjct: 137 RSERETVVDVWESMGDDFPDILPA----AREGDLKAWVTIMYGCDKHCTYCIVPTTRGKE 192

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT----FSDLLYSLS-EI 257
            SR    ++ E ++L   G  EITLLGQNVNA+ GK L G        F DL+  +    
Sbjct: 193 RSRPYEVILAEVQELARQGFKEITLLGQNVNAY-GKDLYGRHGEGAFDFGDLIELIDRNS 251

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
            G+ R+R+TT+HP+D +  +++     + +  + HLPVQSGSD +L+ M R +   +Y +
Sbjct: 252 PGIERIRFTTNHPKDFTRKMVEQIARAEKVCEWFHLPVQSGSDSVLRRMKRSYNRKQYLR 311

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
           ++  IR + PD  I++D IVGFPGET+++F+ T+ LV+++ Y  AF F YS R GTP + 
Sbjct: 312 LVGWIRELIPDAVITTDIIVGFPGETEEEFQETLSLVEEVQYDAAFMFMYSERAGTPAAQ 371

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQS 437
           M +++    K ERL  L +       + N+A VG++ ++L+E  G +KGK      W + 
Sbjct: 372 MEDRLSVPEKKERLQRLMEVQNRIARAKNEARVGKVYDILVE--GLDKGKPDVVFGWTRG 429

Query: 438 ---VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
              V         G I+ VRIT     TL GELV
Sbjct: 430 NILVTFPGDESLRGRIVPVRITRAGTWTLEGELV 463


>gi|329947487|ref|ZP_08294689.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Actinomyces sp. oral
           taxon 170 str. F0386]
 gi|328524766|gb|EGF51821.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Actinomyces sp. oral
           taxon 170 str. F0386]
          Length = 553

 Score =  288 bits (737), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 154/412 (37%), Positives = 246/412 (59%), Gaps = 26/412 (6%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDA------------DLIVLNTC 70
           +P+ + V++ GCQMNV+DS  M  +    GY RV  + +A            D++++NTC
Sbjct: 17  LPRTYHVRTLGCQMNVHDSEHMAGLLEGAGYLRVEDVPEAAARATDAGDGGADVVIINTC 76

Query: 71  HIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGP 130
            +RE AA +++  LG++  +K  R      + + VAGC+AQ  GE I+ R+P V+VV G 
Sbjct: 77  SVRENAATRLFGNLGQLAAVKRERPG----MQIAVAGCLAQQMGEGIVERAPWVDVVFGT 132

Query: 131 QTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKR--GVTAFLTIQEGCDK 188
                LP LLERAR      ++  +VE + E L +       +R     A+++I  GC+ 
Sbjct: 133 HNLDVLPALLERARH-----NSAAAVELE-ESLKVFPSTLPTRRESSYAAWVSIAVGCNN 186

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS 248
            CTFC+VP  RG +  R    V+ E   +   G  E+TLLGQNVN++ G G  G++  F+
Sbjct: 187 TCTFCIVPSLRGKQRDRRPGDVLAEVEAVAAQGAIEVTLLGQNVNSY-GVGF-GDRGAFT 244

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
            LL +   ++G+ R+R+T+ HP   +D +I+A    + +MP LH+P+QSGSDR+L++M R
Sbjct: 245 KLLRAAGSVEGIERVRFTSPHPAAFTDDVIEAMATTEAVMPSLHMPLQSGSDRVLRAMRR 304

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
            +    +  I+D++R V P+ AI++D IVGFPGET++DF+AT+D+V++  +A A++F+YS
Sbjct: 305 SYRTQRFLGILDKVRGVMPEAAITTDIIVGFPGETEEDFQATLDVVERARFASAYTFEYS 364

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
           PR GTP ++  +QV   V  ER   L   +R      N+   G+++EVL+ +
Sbjct: 365 PRPGTPAADRDDQVPAEVVKERYRRLDALVRRIAREENERQEGRVVEVLVAE 416


>gi|54025805|ref|YP_120047.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Nocardia
           farcinica IFM 10152]
 gi|81374170|sp|Q5YT08|MIAB_NOCFA RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|54017313|dbj|BAD58683.1| hypothetical protein [Nocardia farcinica IFM 10152]
          Length = 503

 Score =  288 bits (737), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 153/413 (37%), Positives = 242/413 (58%), Gaps = 20/413 (4%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           + ++++GCQMNV+DS R+  +    GY +      ADL+V NTC +RE A  K+Y  LG 
Sbjct: 7   YEIRTFGCQMNVHDSERLSGLLEDAGYVKAAPGATADLVVFNTCAVRENADNKLYGTLGH 66

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           +  +K  R      + + V GC+AQ + + ++R++P V+VV G      LP LLERAR  
Sbjct: 67  LAPVKAGRP----GMQIAVGGCLAQKDRDTVVRKAPWVDVVFGTHNIGSLPVLLERARHN 122

Query: 147 KRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           ++  V+   S+E     L        R+     +++I  GC+  CTFC+VP  RG E+ R
Sbjct: 123 EQAQVEILESLEAFPSTLPA-----KRESAYAGWVSISVGCNNTCTFCIVPALRGKEVDR 177

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE----KCTFSDLLYSLSEIKGLV 261
               V+ E + L+D GV E+TLLGQNVN++     D +    +  F+ LL +   I+GL 
Sbjct: 178 RPGDVLAEVQALVDQGVLEVTLLGQNVNSYGASFADPDEPRDRGAFAKLLRACGGIEGLE 237

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+T+ HP + +D +I+A      + P LH+P+QSGSDR+LK+M R +    Y  II++
Sbjct: 238 RVRFTSPHPAEFTDDVIEAMAQTPNICPQLHMPLQSGSDRVLKAMRRSYRKARYLGIIEK 297

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R+  P  AI++D IVGFPGET++DF+ T+D+V +  +  AF+F+YS R GTP + M +Q
Sbjct: 298 VRAAMPHAAITTDIIVGFPGETEEDFQETLDVVRQARFTSAFTFQYSKRPGTPAAEMADQ 357

Query: 382 VDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR 431
           V + V  E   RL+ LQ+++    ++ N   +G  +E+L+ +   +K     R
Sbjct: 358 VPKQVVQERYDRLIALQEEI---SLAANRELIGTEVELLVAEGSGKKNAATAR 407


>gi|226366166|ref|YP_002783949.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Rhodococcus
           opacus B4]
 gi|226244656|dbj|BAH55004.1| putative tRNA-thiotransferase [Rhodococcus opacus B4]
          Length = 525

 Score =  288 bits (737), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 155/427 (36%), Positives = 251/427 (58%), Gaps = 25/427 (5%)

Query: 18  VDQCIVPQRFF-VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA 76
           +DQ   P R + V++YGCQMNV+DS R+  +    GY +  +    DL+V NTC +RE A
Sbjct: 24  IDQ--TPHRSYEVRTYGCQMNVHDSERLSGLLEDAGYTKAAAGQSPDLVVFNTCAVRENA 81

Query: 77  AEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL 136
             K+Y  L  +   K    ++  D+ + V GC+AQ + + +++++P V+VV G      L
Sbjct: 82  DNKLYGNLSHLAPAK----EQNPDMQIAVGGCLAQKDRDVVVKKAPWVDVVFGTHNIGSL 137

Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
           P LL+RAR  +R    +  + D  E          R+     +++I  GC+  CTFC+VP
Sbjct: 138 PALLDRARHNQRA---EVEILDALEAFPSTLPA-KRESAYAGWVSISVGCNNTCTFCIVP 193

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE----KCTFSDLLY 252
             RG E+ R    ++ E + L++ GV E+TLLGQNVNA+     D +    +  F+ LL 
Sbjct: 194 ALRGKEVDRRPGDILAEVQALVNEGVVEVTLLGQNVNAYGVSFADPDQPRDRGAFAALLR 253

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
           +  EI GL R+R+T+ HP + +D +I+A  +   + P LH+P+QSGSDR+LK+M R +  
Sbjct: 254 ACGEIDGLERVRFTSPHPAEFTDDVIEAMAETPNVCPQLHMPLQSGSDRVLKAMRRSYRK 313

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
             +  II+++RS  P  AI++D IVGFPGET++DF+ T+D+V +  +  AF+F+YS R G
Sbjct: 314 SRFLGIIEKVRSAMPHAAITTDIIVGFPGETEEDFQDTLDVVRQARFTSAFTFQYSKRPG 373

Query: 373 TPGSNMLEQVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIE----KHGKEK 425
           TP ++M +Q+ + V   + ERL+ LQ+++  ++   N   VG  +E+L+     +   E 
Sbjct: 374 TPAADMDDQLPKAVVQERYERLIALQEQITLEE---NQKLVGAEVELLVATGEGRKNAET 430

Query: 426 GKLVGRS 432
            ++ GR+
Sbjct: 431 ARMSGRA 437


>gi|212692499|ref|ZP_03300627.1| hypothetical protein BACDOR_01995 [Bacteroides dorei DSM 17855]
 gi|212664974|gb|EEB25546.1| hypothetical protein BACDOR_01995 [Bacteroides dorei DSM 17855]
          Length = 456

 Score =  288 bits (737), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 166/451 (36%), Positives = 268/451 (59%), Gaps = 20/451 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F+++YGCQMNV DS  +  +    GY    ++D+AD + +NTC IR+ A +K+ + L
Sbjct: 18  KKLFIETYGCQMNVADSEVIASIMQMAGYHVCETLDEADAVFMNTCSIRDNAEQKILNRL 77

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
               ++K ++ +   +L+V V GC+A+   ++++     V++VVGP  Y  LP+L+    
Sbjct: 78  EFFHSMKKNKRR---NLIVGVLGCMAERVKDDLIENHH-VDLVVGPDAYLTLPDLVASVE 133

Query: 145 FGKRVVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            G++ ++ + S  + +  +  S + G +     ++ F++I  GC+ FC +C+VPYTRG E
Sbjct: 134 AGEKAINVELSTTETYREVIPSRICGNH-----ISGFVSIMRGCNNFCHYCIVPYTRGRE 188

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR +  +++E R L   G  E+TLLGQNVN++R +  +GE  TF  LL +++E    +R
Sbjct: 189 RSRDVESILNEVRDLAAKGYKEVTLLGQNVNSYRFEK-EGEIITFPMLLRTVAEAVPDMR 247

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP+DMSD  ++   +   +  ++HLPVQSGS RILK MNR++T   Y + +  I
Sbjct: 248 VRFTTSHPKDMSDETLQVIVETPNVCKHIHLPVQSGSSRILKLMNRKYTREWYLERVAAI 307

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML-EQ 381
           R + PD  +S+D   G+  ET++D + ++ L+ +  Y  AF FKYS R GT  S  L + 
Sbjct: 308 RRIIPDCGLSTDIFSGYHSETEEDHQESLSLMRECAYDSAFMFKYSERPGTYASKHLPDD 367

Query: 382 VDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQS 437
           V E VK  RL   + LQ +L  +    N   VG+  EV++E   K  + +L GR+   + 
Sbjct: 368 VPEEVKIRRLNEIIELQNRLSAES---NARDVGKTFEVMVEGVSKRSREQLFGRTQQNKV 424

Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           VV +  NH IGD + VRIT+   +TL GE V
Sbjct: 425 VVFDRGNHRIGDFVHVRITEASSATLKGEEV 455


>gi|134098330|ref|YP_001103991.1| (dimethylallyl)adenosine tRNA methylthiotransferase
           [Saccharopolyspora erythraea NRRL 2338]
 gi|291004251|ref|ZP_06562224.1| (dimethylallyl)adenosine tRNA methylthiotransferase
           [Saccharopolyspora erythraea NRRL 2338]
 gi|229890638|sp|A4FAJ1|MIAB_SACEN RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|133910953|emb|CAM01066.1| methylase of isopentenylated A37 derivatives in tRNA
           [Saccharopolyspora erythraea NRRL 2338]
          Length = 491

 Score =  288 bits (737), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 164/421 (38%), Positives = 250/421 (59%), Gaps = 36/421 (8%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           + +++YGCQMNV+DS R+  M    GY R  +  D D++V NTC +RE A  ++Y  LG 
Sbjct: 5   YQIRTYGCQMNVHDSERLAGMLEDAGYVRAGTDVDPDVVVFNTCAVRENADNRLYGNLGH 64

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           +R  K+        + + V GC+AQ +  EI++R+P V+VV G      LP LLERAR  
Sbjct: 65  LRPAKD----RNPGMQIAVGGCLAQKDRGEIVKRAPWVDVVFGTHNLGSLPTLLERAR-- 118

Query: 147 KRVVDTDYSVEDKFERLSIVDG-----GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
                  ++ E + E L  +D         R+   + ++++  GC+  CTFC+VP  RG 
Sbjct: 119 -------HNEEAEVEILESLDVFPSTLPARRESAYSGWVSVSVGCNNTCTFCIVPALRGK 171

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGL 260
           E  R   +++ E + L+  GV E+TLLGQNVNA+   G++ G++  F  LL S  EI+GL
Sbjct: 172 EKDRRPGEILSEVQALVSEGVLEVTLLGQNVNAY---GVEFGDRFAFGKLLRSCGEIEGL 228

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+T+ HPRD +D +I A  +   +   LH+P+QSGSDR+LK M R + +  Y  I+ 
Sbjct: 229 ERVRFTSPHPRDFTDDVIAAMAETPNVCHQLHMPLQSGSDRVLKQMRRSYRSQRYLDILR 288

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R   PD AI++D IVGFPGET++DF ATM +V +  +A AF+F+YS R GTP + M  
Sbjct: 289 KVREAMPDAAITTDIIVGFPGETEEDFEATMQVVREARFASAFTFQYSKRPGTPAAEMEG 348

Query: 381 QVDENV---KAERLLCLQKKLREQQVSFN--DACVGQIIEVLI-EKHGK---EKGKLVGR 431
           Q+ + V   + +RL+ LQ      Q+S++     VG+ +E+L+ E  G+   E  +L GR
Sbjct: 349 QLPKEVVQQRYDRLIELQN-----QISWDVGKELVGRSVELLVAEGEGRKDTETHRLSGR 403

Query: 432 S 432
           +
Sbjct: 404 A 404


>gi|255534247|ref|YP_003094618.1| (dimethylallyl)adenosine tRNA methylthiotransferase
           [Flavobacteriaceae bacterium 3519-10]
 gi|255340443|gb|ACU06556.1| tRNA-i(6)A37 methylthiotransferase [Flavobacteriaceae bacterium
           3519-10]
          Length = 508

 Score =  288 bits (737), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 176/463 (38%), Positives = 263/463 (56%), Gaps = 29/463 (6%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F++SYGCQMN  DS  +  +   QGY    + ++ADLI+LNTC IREKA + V   L
Sbjct: 48  KKLFLESYGCQMNFSDSEIVASILSKQGYNTTLNHEEADLILLNTCSIREKAEQTVRMRL 107

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            + +NLK    KE  +L V V GC+A+    + L    +V++VVGP  Y  LP LL+   
Sbjct: 108 SQFKNLK----KERPNLTVGVLGCMAERLKTKFLEEEQLVDLVVGPDAYRDLPNLLKETD 163

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G+  ++   S ++ +  ++ V  G N   GVTAF+TI  GCD  CTFCVVP+TRG E S
Sbjct: 164 SGRDAINVILSKDETYADINPVRLGGN---GVTAFVTITRGCDNMCTFCVVPFTRGRERS 220

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNA--WRGKGLDGE-----------KCTFSDLL 251
           R    +V+E + L +NG  EITLLGQNV++  W G G   +              F+ LL
Sbjct: 221 RDPHSIVEECKTLWENGYKEITLLGQNVDSYLWYGGGAKKDFKNASEMQQLTAIRFAQLL 280

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
             ++     +R+R++TS+P DM+  + +     D +  Y+HLPVQSGSDRIL+ MNR+HT
Sbjct: 281 EMVAVAVPEMRIRFSTSNPHDMTVDVFEVMAKHDNICKYVHLPVQSGSDRILEKMNRQHT 340

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
             EY  +I+R + + P+I+ S D I+GF GET++D + T+ L+ ++ Y   + F YS R 
Sbjct: 341 RAEYLNLINRAKEIVPEISFSQDMIIGFCGETEEDHQLTLSLMREVEYDYGYMFAYSERP 400

Query: 372 GTPGSNMLE-QVDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KG 426
           GTP    +E  V  +VK  RL   + LQ +L  +++       G++ EVLIE   K+ + 
Sbjct: 401 GTPAHRKMEDDVPADVKQRRLAEVIALQGELSRKRMQ---GYAGRMHEVLIEGTSKKNQN 457

Query: 427 KLVGRSPWLQSVVLNS-KNHNIGDIIKVRITDVKISTLYGELV 468
           +  GR+      V +  ++  +GDI+ V +      TL G  V
Sbjct: 458 QWKGRNSQNAVCVFDKLEDQKLGDIVTVFVHGNTQGTLLGTTV 500


>gi|325107255|ref|YP_004268323.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Planctomyces brasiliensis
           DSM 5305]
 gi|324967523|gb|ADY58301.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Planctomyces brasiliensis
           DSM 5305]
          Length = 497

 Score =  288 bits (736), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 172/479 (35%), Positives = 268/479 (55%), Gaps = 34/479 (7%)

Query: 17  IVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA 76
           I+ Q   P++ F+++ GCQMNV DS  +       GYE  ++M  AD I+ NTC +RE A
Sbjct: 11  IMSQSEAPKKLFIETVGCQMNVLDSELVVAALRKDGYELTDNMKKADTILFNTCSVREHA 70

Query: 77  AEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL 136
            +K+YS LGR++  K +R     DL++ V GC+AQ + ++I +++P V++VVG      +
Sbjct: 71  EQKIYSQLGRLKYSKQTR----PDLVIGVMGCMAQKDQKKIFQKAPQVDLVVGTGQLAEI 126

Query: 137 PELLERARFGK---------RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCD 187
           P L+  AR  +         R   T   V   F+    +     R     AF+ I  GCD
Sbjct: 127 PRLVVEAREKRDRQLAVSLSRKGGTRQEVSSSFQSYDPLRDPEMRPSPYQAFVRITFGCD 186

Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTF 247
           KFCT+CVVP TRG E SR+ S+++ E + L D GV EITLLGQ VN++R    +G++   
Sbjct: 187 KFCTYCVVPMTRGPEQSRNPSEILKETKALADQGVQEITLLGQTVNSYRLTE-NGKEYRL 245

Query: 248 SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307
           +DLL  L E++G+ R+++ T++P+DM++ L++A  D   +  YLH+P+Q G D  LK M 
Sbjct: 246 ADLLTMLHEVEGIKRIKFVTNYPKDMTNDLLQAVRDYKKVSHYLHVPLQHGCDEQLKLMK 305

Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           R +T  +YR ++ RIR   P  ++SSDFIVGF GET++  + +++ + +  +  +F FKY
Sbjct: 306 RGYTTEDYRDMMGRIREHLPHASVSSDFIVGFCGETEESHQKSLEAIREYRFKNSFIFKY 365

Query: 368 SPRLGT-PGSNMLEQVDENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK 423
           S R GT   +N  + + + VK  R   +L LQ  +  +    N   +G+ +EVL+E   K
Sbjct: 366 SERAGTKAAANFADDIPDEVKKRRNNEMLDLQNAISAED---NAEFIGREVEVLVEGPSK 422

Query: 424 EKGK-------------LVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
              K             L+GR+   + VV N  +   G + +V I D   +TL G +V 
Sbjct: 423 NAVKAEQNRPSNATPDQLMGRTRCDRIVVFNGNSRLTGSLTQVAIHDCTPTTLMGNIVT 481


>gi|308176878|ref|YP_003916284.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Arthrobacter arilaitensis
           Re117]
 gi|307744341|emb|CBT75313.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Arthrobacter arilaitensis
           Re117]
          Length = 509

 Score =  288 bits (736), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 165/452 (36%), Positives = 273/452 (60%), Gaps = 33/452 (7%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERV---NSMDDADLIVLNTCHIREKAAEKV 80
           P+ + V+++GCQMNV+DS R+  +  + G  R     + + AD++V NTC +RE A  K+
Sbjct: 16  PRTYEVRTFGCQMNVHDSERLSGLLENAGLSRKPEEQAEEVADVVVFNTCAVRENADNKL 75

Query: 81  YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140
           Y  LG ++NLK  R      + + V GC+AQ + + I++++P V+VV G      LP LL
Sbjct: 76  YGHLGLLKNLKAER----PGMQIAVGGCLAQKDRDTIVKKAPWVDVVFGTHNIGSLPALL 131

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGY-NRKRGVTA-FLTIQEGCDKFCTFCVVPYT 198
           +RA   K+      +  +  E L +       R+  V A +++I  GC+  CTFC+VP  
Sbjct: 132 DRATHNKK------AQLEILESLDVFPSTLPTRRESVYAGWVSISVGCNNTCTFCIVPSL 185

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEI 257
           RG E  R   +++ E + L+D+G  E+TLLGQNVN++   G++ G++  F  LL +  EI
Sbjct: 186 RGKERDRRPGEILAEIQALVDDGAIEVTLLGQNVNSY---GVEFGDRLAFGKLLRACGEI 242

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
           +GL R+R+T+ HP   +D +I+A  +   +MP LH+P+QSGSD++LK M R + + ++  
Sbjct: 243 EGLERVRFTSPHPAAFTDDVIEAMAETPNVMPQLHMPLQSGSDKVLKDMRRSYRSKKFLG 302

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
           I+D++R   P  AI++D IVGFPGET++DF+AT+D+V    ++ AF+F+YS R GTP + 
Sbjct: 303 ILDKVRERIPHAAITTDIIVGFPGETEEDFQATLDVVQASRFSSAFTFQYSKRPGTPAAE 362

Query: 378 MLEQVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGK---EKGKLVG 430
           + EQ+ + V   + ERL  LQ ++ +++   N   +G+ +EV++ E+ G+   E  +L G
Sbjct: 363 LEEQLPKAVVQERYERLTQLQDRIAKEE---NAKQLGRTVEVMVTEQSGRKSAETHRLTG 419

Query: 431 RSPWLQ----SVVLNSKNHNIGDIIKVRITDV 458
           R+   +    SV   ++    GD+  + IT+V
Sbjct: 420 RAQDQRLVHFSVPDGAETPRPGDLATLPITEV 451


>gi|157413867|ref|YP_001484733.1| (dimethylallyl)adenosine tRNA methylthiotransferase
           [Prochlorococcus marinus str. MIT 9215]
 gi|229890599|sp|A8G6B6|MIAB_PROM2 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|157388442|gb|ABV51147.1| 2-methylthioadenine synthetase [Prochlorococcus marinus str. MIT
           9215]
          Length = 464

 Score =  288 bits (736), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 171/455 (37%), Positives = 265/455 (58%), Gaps = 23/455 (5%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           +++ ++GCQMN  DS RM       GY R +    ADL++ NTC IR+ A +KVYSFLGR
Sbjct: 21  YWITTFGCQMNKADSERMAGTLEKMGYTRADDELKADLVLYNTCTIRDNAEQKVYSFLGR 80

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
               +  R  +   L +VVAGC+AQ EGE +LRR P +++V+GPQ    L  LL +   G
Sbjct: 81  ----QAKRKHKIPSLKLVVAGCLAQQEGESLLRRVPELDLVMGPQHVNNLENLLGKVDLG 136

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
            +V  T    E+ F    I +    R+  +  ++ I  GC++ C++CVVP  RG E SR 
Sbjct: 137 NQVAAT----EETFISEDITNA--RRESSICGWVNIIYGCNERCSYCVVPSVRGKEQSRY 190

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG------EKCTFSDLLYSLSEIKGL 260
              +  E +KL ++   EITLLGQN++A+ G+ L G      ++ T +DLLY + +++G+
Sbjct: 191 PDAIKSEIQKLANDNFKEITLLGQNIDAY-GRDLPGTTKEGRKENTLTDLLYYIHDVEGI 249

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+ TSHPR  S  LI+A  +LD +  + H+P QSG++ ILK M R +T  +Y++II+
Sbjct: 250 RRIRFATSHPRYFSRRLIQACYELDKVCEHFHIPFQSGNNEILKLMARGYTIDKYKRIIE 309

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
            IRS+ P+ +I++D IV FPGE+++ +R T+ L+  IG+ Q  +  YSPR  TP +    
Sbjct: 310 NIRSLMPNASITADAIVAFPGESEEQYRDTLKLISDIGFDQVMTAAYSPRPNTPAALWHN 369

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSP----WL 435
           Q+ E VK ERL  + + +       N+  +  I  VLIE  + K   +++GR+       
Sbjct: 370 QISEEVKKERLKEINELVETTSKQRNERYLDSIESVLIEGFNPKNSSQIMGRTRTNRLTF 429

Query: 436 QSVVLNSK-NHNIGDIIKVRITDVKISTLYGELVV 469
             +  N K N ++GD I V+I + +  +L G L +
Sbjct: 430 VEIPKNIKFNFSLGDEIDVKINEARPFSLTGILCL 464


>gi|227503441|ref|ZP_03933490.1| tRNA 2-methylthioadenosine synthase [Corynebacterium accolens ATCC
           49725]
 gi|227075944|gb|EEI13907.1| tRNA 2-methylthioadenosine synthase [Corynebacterium accolens ATCC
           49725]
          Length = 489

 Score =  288 bits (736), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 160/441 (36%), Positives = 245/441 (55%), Gaps = 31/441 (7%)

Query: 36  MNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRI 95
           MNV+DS R+  +    GY   +   + DLIV NTC +RE A +++Y  LG ++  K +  
Sbjct: 1   MNVHDSERISGLLEEAGYAAADEATEPDLIVFNTCAVRENADKRLYGTLGALKKTKENHP 60

Query: 96  KEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYS 155
                + + V GC+AQ + + +L  +P V+ V G      LP LLERAR  +   +    
Sbjct: 61  G----MQIAVGGCLAQKDKDTVLDNAPWVDAVFGTHNMAALPTLLERARHNE---EAQVE 113

Query: 156 VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEAR 215
           + D  E    V     R+     ++++  GC+  CTFC+VP  RG E  R    ++ E +
Sbjct: 114 IVDSLEAFPSVLPA-KRESAYAGWVSVSVGCNNTCTFCIVPSLRGKEEDRRPGDILAEVQ 172

Query: 216 KLIDNGVCEITLLGQNVNAWRGKGLDGE----KCTFSDLLYSLSEIKGLVRLRYTTSHPR 271
            L+D GV E+TLLGQNVNA+     D E    +  FS LL  + +I GL RLR+T+ HP 
Sbjct: 173 ALVDQGVSEVTLLGQNVNAYGVNFADPEMPRDRFAFSKLLREVGKIDGLERLRFTSPHPA 232

Query: 272 DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAI 331
           + +  +I A  +   + P LH+P+QSGSD++LK M R +   ++ +I+D +R   P+ AI
Sbjct: 233 EFTSDVIDAMAETPAVCPQLHMPLQSGSDKVLKDMRRSYRTKKFLRILDEVREKIPNAAI 292

Query: 332 SSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV---KA 388
           ++D IVGFPGET++DF+ATMDLV +  +A AF+F+YSPR GTP + M  QV + V   + 
Sbjct: 293 TTDIIVGFPGETEEDFQATMDLVRRARFASAFTFQYSPRPGTPAAEMENQVPKEVVQDRF 352

Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-------------GKLVGRSPWL 435
           ERL+ LQ  ++ ++   N   VG  +E+L++  G  K             G+LV  SP  
Sbjct: 353 ERLVALQDSIQAEE---NQKLVGTEVELLVQAEGGRKNDETHRMSGRARDGRLVHFSPID 409

Query: 436 QSVVLNSKNHNIGDIIKVRIT 456
            +    S     GD+++ ++T
Sbjct: 410 ANGADISAEIRPGDVVRTKVT 430


>gi|281421531|ref|ZP_06252530.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella copri DSM
           18205]
 gi|281404603|gb|EFB35283.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella copri DSM
           18205]
          Length = 444

 Score =  288 bits (736), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 163/450 (36%), Positives = 265/450 (58%), Gaps = 15/450 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F+++YGCQMNV DS  +  +    GYE     ++AD I LNTC IRE A  K+Y  L
Sbjct: 2   KKLFIETYGCQMNVADSEVVASVMQMAGYEICEKEEEADAIFLNTCSIRENAENKIYHRL 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             +    ++  K+G  +++ V GC+A+   +++++ +   N+V GP +Y  LP+++ +  
Sbjct: 62  DTL----HAEQKKGRKVILGVLGCMAERVKDDLIQ-NHYANLVCGPDSYLNLPDMIAQCE 116

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G   ++ + S  + +  +     G NR   V+ F++I  GC+ FC +C+VPYTRG E S
Sbjct: 117 MGTNAINIELSKTETYRDIVPQRIGGNR---VSGFVSIMRGCNNFCHYCIVPYTRGRERS 173

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAW----RGKGLDGEKCTFSDLLYSLSEIKGL 260
           R    ++ E R L   G  E+TLLGQNVN++     GK  +G   +F++LL+ +++    
Sbjct: 174 RDAESILREVRDLQQRGFKEVTLLGQNVNSYGLSPSGKREEG-SLSFAELLHMVAQAVPD 232

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
           +R+R+TTS+P DM++ ++ A  +   L  ++H P QSGS++ILK MNR++T  EY Q I 
Sbjct: 233 MRVRFTTSNPEDMTEDILHAIAEEPNLCKHIHFPAQSGSNKILKLMNRKYTREEYLQRIA 292

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML- 379
            I+ + P   I++D  VG+  ET++D + T+ LV ++G+  AF FKYS R GT  +  L 
Sbjct: 293 DIKRIIPGCGITTDIFVGYHDETEEDHQETLSLVKEVGFDSAFMFKYSERPGTYAAKHLP 352

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSV 438
           + V E  K  RL  L K   E     N    G++  +LIE   K  + +++GR+   ++V
Sbjct: 353 DNVSEETKIARLNELIKLQTEVSAEQNKKDEGKVFTILIENFSKRSREQMMGRTEQNKAV 412

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           V++  NH+IG+ +KVRIT    +TL+GE V
Sbjct: 413 VIDKGNHHIGEFVKVRITGSTSATLFGEEV 442


>gi|78185107|ref|YP_377542.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Synechococcus
           sp. CC9902]
 gi|123743500|sp|Q3AV90|MIAB_SYNS9 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|78169401|gb|ABB26498.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Synechococcus sp. CC9902]
          Length = 472

 Score =  288 bits (736), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 178/455 (39%), Positives = 268/455 (58%), Gaps = 31/455 (6%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           +++ ++GCQMN  DS RM  +  S GY    +  DADL++ NTC IR+ A +KVYS+LGR
Sbjct: 24  YWITTFGCQMNKADSERMAGILESMGYCEATAELDADLVLYNTCTIRDNAEQKVYSYLGR 83

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
               +  R ++  +L +VVAGCVAQ EGE +LRR P +++V+GPQ   RL  LL++   G
Sbjct: 84  ----QAQRKRDNPNLTLVVAGCVAQQEGESLLRRVPELDLVMGPQHANRLETLLQQVDSG 139

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           ++VV T+       E ++       R   +  ++ +  GC++ CT+CVVP  RG E SR 
Sbjct: 140 QQVVATEE--HHILEDITTA----RRDSAICGWVNVIYGCNERCTYCVVPSVRGQEQSRR 193

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG------EKCTFSDLLYSLSEIKGL 260
              +  E   L   G  EITLLGQN++A+ G+ L G       + T +DLL+ + +++G+
Sbjct: 194 PEAIRLEMEGLAAQGFKEITLLGQNIDAY-GRDLPGITAEGRREHTLTDLLHHVHDVEGI 252

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            RLR+ TSHPR  ++ LI A  DL  +  + H+P QSG + +LKSM R +T   YR+IID
Sbjct: 253 ERLRFATSHPRYFTERLIDACADLSKVCEHFHIPFQSGDNALLKSMARGYTVERYRRIID 312

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           RIR   PD +IS+D IVGFPGETD  +R T+DL+D+I + Q  +  YSPR  TP +    
Sbjct: 313 RIRDRMPDASISADVIVGFPGETDAQYRRTLDLIDEIAFDQVNTAAYSPRPNTPAATWDN 372

Query: 381 QVDENVKAERL----LCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRS--- 432
           Q+ E+VK ERL      +++  RE+ + +     G+  EVL E  + K+  +L+GR+   
Sbjct: 373 QLPESVKVERLKEINALVERNARERNIRYQ----GRTEEVLAEGINPKDPEQLMGRTRTN 428

Query: 433 --PWLQSVVLNSKNHNIGDIIKVRITDVKISTLYG 465
              +  +   +   +  GD++ VRI  V+  +L G
Sbjct: 429 RLTFFSATSPDGHLYQPGDLVNVRIDAVRSFSLSG 463


>gi|256375581|ref|YP_003099241.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Actinosynnema
           mirum DSM 43827]
 gi|255919884|gb|ACU35395.1| RNA modification enzyme, MiaB family [Actinosynnema mirum DSM
           43827]
          Length = 491

 Score =  288 bits (736), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 159/440 (36%), Positives = 256/440 (58%), Gaps = 18/440 (4%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P++F ++++GCQMNV+DS R+  M  + GY   +  + AD++V NTC +RE A  K+Y  
Sbjct: 4   PKKFEIRTFGCQMNVHDSERLAGMLEAAGYAAASGGESADVVVFNTCAVRENADNKLYGT 63

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LG +   K +      D+ + V GC+AQ +   I++R+P V+VV G      LP LLERA
Sbjct: 64  LGHLAPAKAANP----DMQIAVGGCLAQKDQAAIVKRAPWVDVVFGTHNIGSLPVLLERA 119

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           R  +   +    + D  E          R    + ++++  GC+  CTFC+VP  RG E 
Sbjct: 120 RHNR---EAQVEILDSLETFPSTLPA-RRDSAYSGWVSVSVGCNNTCTFCIVPSLRGKEK 175

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVR 262
            R   +V+ E + L+  GV E+TLLGQNVN++   G++ G++  F  LL +  +++GL R
Sbjct: 176 DRRPGEVLAEVQALVAEGVLEVTLLGQNVNSY---GVEFGDRYAFGKLLRACGDVEGLER 232

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+T+ HP+D +D +I A  +   +   LH+P+QSGSDR+LK M R +    Y  I++ +
Sbjct: 233 VRFTSPHPKDFTDDVIAAMAETPNVCHQLHMPLQSGSDRVLKEMRRSYRTGRYLSILENV 292

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+  PD AI++D IVGFPGET+ DF+AT+D+V +  ++ AF+F+YS R GTP + + +Q+
Sbjct: 293 RAAMPDAAITTDIIVGFPGETEADFQATLDVVREARFSSAFTFQYSKRPGTPAAELPDQL 352

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE----KHGKEKGKLVGRSPWLQSV 438
            + V  ER   L   + E   + N A VG+++EVL      +   E  ++ GR+   + V
Sbjct: 353 PKQVVQERYDRLVTLVNELAWAENKAQVGRVVEVLASAGEGRKDTETNRMSGRARDGKLV 412

Query: 439 VLNSKNHNI--GDIIKVRIT 456
                +  +  GD+++  IT
Sbjct: 413 HFTPGDARVRPGDVVETAIT 432


>gi|34763969|ref|ZP_00144862.1| tRNA 2-methylthioadenosine synthase [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
 gi|27886260|gb|EAA23543.1| tRNA 2-methylthioadenosine synthase [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
          Length = 435

 Score =  287 bits (735), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 158/441 (35%), Positives = 262/441 (59%), Gaps = 16/441 (3%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           +YGCQMNV +S +++ +F + GY+    +D+AD + LNTC +RE AA +++  LG ++ L
Sbjct: 8   TYGCQMNVNESAKIKKIFQNLGYDVTEEIDNADAVFLNTCTVREGAATQIFGKLGELKAL 67

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
           K  R       ++ V GC AQ +GEE++++ PI+++V+G Q   R+P+ +E+    +   
Sbjct: 68  KEKR-----GTIIGVTGCFAQEQGEELVKKFPIIDIVMGNQNIGRIPQAIEKIENNESTH 122

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
           +     ED+       + G ++    TA ++I  GC+ FCTFC+VPY RG E S  L ++
Sbjct: 123 EVYTDNEDELPPRLDAEFGSDQ----TASISITYGCNNFCTFCIVPYVRGRERSVPLEEI 178

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270
           V +  + +  G  EI LLGQNVN++     +G+   F+ LL  + +++G   +R+ + HP
Sbjct: 179 VKDVEQYVKKGAKEIVLLGQNVNSYGKDFKNGD--NFAKLLDEICKVEGDYIVRFVSPHP 236

Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330
           RD +D +I      D +   LHLP+QSGS +IL+ M R +T  +Y  ++D+I+S  P +A
Sbjct: 237 RDFTDDVIDVIAKNDKISKCLHLPLQSGSSQILRKMGRGYTKEKYLALVDKIKSKIPGVA 296

Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER 390
           +++D IVGFPGET++DF  T+D+V K+ +  ++ F YS R GT  + M  Q++E VK ER
Sbjct: 297 LTADIIVGFPGETEEDFLDTIDVVQKVSFDNSYMFMYSIRKGTKAAIMDNQIEEAVKKER 356

Query: 391 LLCLQKKLREQQVSFNDAC--VGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNI- 447
           L  L +   + + SF ++     +I++VL+E   K+  +++        VVL   N  + 
Sbjct: 357 LQRLME--VQNKCSFEESSKYKDRIVKVLVEGPSKKNKEVLSGRTSTNKVVLFKGNLGLK 414

Query: 448 GDIIKVRITDVKISTLYGELV 468
           G  + V+I + K  TLYGE+V
Sbjct: 415 GQFVNVKINECKTWTLYGEIV 435


>gi|169334037|ref|ZP_02861230.1| hypothetical protein ANASTE_00430 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258754|gb|EDS72720.1| hypothetical protein ANASTE_00430 [Anaerofustis stercorihominis DSM
           17244]
          Length = 438

 Score =  287 bits (735), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 172/448 (38%), Positives = 259/448 (57%), Gaps = 16/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +++ + +YGCQMN  DS ++  M    GY R     DADLI++NTC +RE A  + +  L
Sbjct: 2   KKYLIITYGCQMNENDSEKISGMVEELGYSRTEDEKDADLIIMNTCSVRENANNRFFGNL 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG---EEILRRSPIVNVVVGPQTYYRLPELLE 141
           G  + LK  +     DL++ V GC+ Q EG   ++I  +   V++V G      LP LLE
Sbjct: 62  GNFKKLKKKK----PDLILAVCGCMMQ-EGHIVKKIKEKYSFVDIVFGTHNISSLPSLLE 116

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
                ++++       DK      V   +  K    AF++I +GC+ FC++C+VPYTRG 
Sbjct: 117 ECDAKRKLIVEVLEDSDKLAEGLPVHRQFKHK----AFVSIMKGCNNFCSYCIVPYTRGR 172

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR    ++ E R+L ++GV E+TLLGQNVN++ GK LD +   F+ LL  +SE++G+ 
Sbjct: 173 ERSREYQNILSEVRELANDGVKEVTLLGQNVNSY-GKNLD-DPVPFAKLLKMVSEVEGIE 230

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+ TSHP+D+SD LI+   D   +  ++HLP+QSGS RILK MNR +    Y +++ +
Sbjct: 231 RVRFMTSHPKDLSDELIEVIRDNPKICRHIHLPMQSGSSRILKLMNRHYDKDTYIKLVKK 290

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           IR   PD+AI++D IVGFP ET++DF  T+D+  K  +  AF+F YS R GT  + M  Q
Sbjct: 291 IRREIPDVAITTDIIVGFPTETEEDFLDTLDVYKKCEFDTAFTFIYSKREGTKAAVMDGQ 350

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440
           +DE    +R   L K   E  +  N   + + +++LI+   K     L GR+   + V  
Sbjct: 351 IDEKTVKDRFDRLLKLHDEIVLKQNKKYLNREVDILIDGKSKTNDNVLTGRTSSFKLVNF 410

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
             K    GDI+KV+ITDV    L GE++
Sbjct: 411 TGKGET-GDIVKVKITDVHTFHLSGEVI 437


>gi|313206813|ref|YP_004045990.1| tRNA-i(6)a37 thiotransferase enzyme miab [Riemerella anatipestifer
           DSM 15868]
 gi|312446129|gb|ADQ82484.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Riemerella anatipestifer
           DSM 15868]
 gi|315023886|gb|EFT36888.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Riemerella
           anatipestifer RA-YM]
 gi|325335747|gb|ADZ12021.1| 2-methylthioadenine synthetase [Riemerella anatipestifer RA-GD]
          Length = 477

 Score =  287 bits (735), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 179/460 (38%), Positives = 263/460 (57%), Gaps = 29/460 (6%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F++SYGCQMN  DS  +  +   +GY     +++ADLI+LNTC IREKA + V   L
Sbjct: 25  KKLFLESYGCQMNFSDSEIVASILNDEGYNTTLKVEEADLILLNTCSIREKAEQTVRMRL 84

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            + +NLK    KE   L V V GC+A+    + L    +V++VVGP  Y  LP LL+   
Sbjct: 85  SQFKNLK----KEKPSLTVGVLGCMAERLKTKFLEEEQLVDLVVGPDAYRDLPNLLKETE 140

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G+  ++   S E+ +  ++ V  G N   GVTAF+TI  GCD  CTFCVVP+TRG E S
Sbjct: 141 DGRDAINVILSKEETYADINPVRLGGN---GVTAFVTITRGCDNMCTFCVVPFTRGRERS 197

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNA--WRGKG--LDGEKCT---------FSDLL 251
           R    ++ E ++L +NG  EITLLGQNV++  W G G   D +K T         FS LL
Sbjct: 198 RDPHSIIKECQELWENGYKEITLLGQNVDSYLWYGGGPKKDFDKATEMQKATAVDFSQLL 257

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
             +++    +R+R++TS+P+DMS  + +       +  Y+HLPVQ+GS+++L+ MNR+HT
Sbjct: 258 EMVAKAVPEMRIRFSTSNPQDMSLEVFRKMAQYPNICKYVHLPVQTGSNKMLELMNRQHT 317

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
             EY ++I   R + PD+A S D IVGF  ET++D + T+ L+ ++ Y   + F YS R 
Sbjct: 318 REEYLELIREARKIVPDVAFSQDMIVGFCNETEEDHQDTLSLMREVEYDYGYMFAYSERP 377

Query: 372 GTPGSNMLE-QVDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKG 426
           GTP    +E  V   VK  RL   + LQ +L  +++      VG+  E+LIE +  K+K 
Sbjct: 378 GTPAHKKMEDNVPAEVKKRRLQEVIDLQGELSRKRMK---GYVGRHHEILIEGESKKDKN 434

Query: 427 KLVGRSPWLQSVVLNSKN-HNIGDIIKVRITDVKISTLYG 465
           +  GR+      V + K    IGDI+ V + D    TL G
Sbjct: 435 QWKGRNSQNAVCVFDKKEGQKIGDIVSVFVYDNTQGTLLG 474


>gi|158313078|ref|YP_001505586.1| RNA modification protein [Frankia sp. EAN1pec]
 gi|229890538|sp|A8L6J8|MIAB_FRASN RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|158108483|gb|ABW10680.1| RNA modification enzyme, MiaB family [Frankia sp. EAN1pec]
          Length = 494

 Score =  287 bits (735), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 166/412 (40%), Positives = 241/412 (58%), Gaps = 18/412 (4%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           + V+++GCQMNV+DS R+  +  S GY       DAD++V NTC +RE A  ++Y  LG 
Sbjct: 6   YQVRTFGCQMNVHDSERLAGLLESAGYVPAPEGSDADVVVFNTCAVRENADNRLYGNLGH 65

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           +   K S       + + V GC+AQ +   IL R+P V+VV G    +RLP LLERAR  
Sbjct: 66  LYPAKKSNPA----MQIAVGGCLAQKDRSVILDRAPWVDVVFGTHNIHRLPVLLERARH- 120

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGV--TAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
               ++   VE   E L +       +R    +A+++I  GCD  CTFC+VP  RG E  
Sbjct: 121 ----NSAAQVEIA-EALEVFPSSLPARRASHHSAWVSISVGCDNTCTFCIVPSLRGGERD 175

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R    V+ E   L+  G  EITLLGQNVN++ G+ L G+   F+ LL +   ++GL R+R
Sbjct: 176 RRPGDVLAEVEALVAEGALEITLLGQNVNSY-GRSL-GDPGAFAKLLRACGRVEGLERVR 233

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +T+ HPRD +D +I+A      + P LH+P+QSGSD +L+ M R +    +  I++R+R+
Sbjct: 234 FTSPHPRDFTDDVIEAMAQTPNVCPQLHMPLQSGSDVVLRRMRRSYRRERFLGIVERVRA 293

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             PD AI++D IVGFPGET+ DF  T+D+V    +A AF+FKYSPR GTP + M   VD 
Sbjct: 294 AMPDAAITTDIIVGFPGETEADFADTLDVVRTARFAGAFTFKYSPRPGTPAAEMDGAVDP 353

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKE---KGKLVGRS 432
            V +ER   L     E   + N A VG+ +E+++ E  G++    G+L GR+
Sbjct: 354 AVVSERYGRLASLQDEMSWAENRAQVGRRVEIVVAEGEGRKDSATGRLSGRA 405


>gi|227488710|ref|ZP_03919026.1| tRNA 2-methylthioadenosine synthase [Corynebacterium
           glucuronolyticum ATCC 51867]
 gi|227542291|ref|ZP_03972340.1| tRNA 2-methylthioadenosine synthase [Corynebacterium
           glucuronolyticum ATCC 51866]
 gi|227091371|gb|EEI26683.1| tRNA 2-methylthioadenosine synthase [Corynebacterium
           glucuronolyticum ATCC 51867]
 gi|227181891|gb|EEI62863.1| tRNA 2-methylthioadenosine synthase [Corynebacterium
           glucuronolyticum ATCC 51866]
          Length = 483

 Score =  287 bits (735), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 159/415 (38%), Positives = 247/415 (59%), Gaps = 27/415 (6%)

Query: 36  MNVYDSLRMEDMFFSQGYERVNSMDD---------ADLIVLNTCHIREKAAEKVYSFLGR 86
           MNV+DS R+  +  S GY      D           DLIV NTC +RE AA+++Y  LG+
Sbjct: 1   MNVHDSERLSGLLESAGYVAYEGEDPLVAGDHTVVPDLIVFNTCAVRENAAQRLYGTLGQ 60

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           +  +K    ++   + + V GC AQ +G++I+ ++P V+VV G      LP LL+RA   
Sbjct: 61  LLGVK----EDHPTMQIAVGGCQAQNDGKKIIEKAPWVDVVFGTHNLGSLPALLDRASHN 116

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           KR    +  ++D  E    V     R+   + +++I  GC+  CTFC+VP+ RG E+ R 
Sbjct: 117 KRA---EVEIKDALEDFPSVLPA-KRESAYSGWVSISVGCNNTCTFCIVPHLRGKELDRR 172

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAW----RGKGLDGEKCTFSDLLYSLSEIKGLVR 262
              ++ E R L++ GV E+TLLGQNVNA+        ++ ++  FS LL +  EI GL R
Sbjct: 173 PGDILAEVRALVEQGVEEVTLLGQNVNAYGVNFADPSVERDRSAFSKLLRACGEIDGLER 232

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LR+T+ HP + +  +I A  D   + P LH+P+QSGSD++LK M R +   ++  I+D +
Sbjct: 233 LRFTSPHPAEFTSDVIDAMVDTPNICPQLHMPLQSGSDQVLKRMRRSYRTKKFLSILDEV 292

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R   P  AI++D IVGFPGET++DF+ T+D+V++  +  AF+F+YSPR GTP ++  +QV
Sbjct: 293 REKIPHAAITTDIIVGFPGETEEDFQKTLDVVERARFTSAFTFQYSPRPGTPAASYEDQV 352

Query: 383 DENVKAERLLCLQKKLREQQVSFNDAC-VGQIIEVLIEKHGKEKG----KLVGRS 432
            + V  ER   LQ  L+E+  +  +AC VGQ +E+L+++H  +KG    +L GR+
Sbjct: 353 PKEVVQERFERLQ-ALQERICAEENACFVGQEVELLVQEHQSKKGTENHRLSGRA 406


>gi|116072319|ref|ZP_01469586.1| hypothetical protein BL107_11046 [Synechococcus sp. BL107]
 gi|116064841|gb|EAU70600.1| hypothetical protein BL107_11046 [Synechococcus sp. BL107]
          Length = 518

 Score =  287 bits (734), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 177/455 (38%), Positives = 267/455 (58%), Gaps = 31/455 (6%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           +++ ++GCQMN  DS RM  +  + GY    +  DADL++ NTC IR+ A +KVYS+LGR
Sbjct: 72  YWITTFGCQMNKADSERMAGILETMGYREATAELDADLVLYNTCTIRDNAEQKVYSYLGR 131

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
               +  R ++  +L +VVAGCVAQ EGE +LRR P +++V+GPQ   RL  LL++   G
Sbjct: 132 ----QAQRKRDNPNLTLVVAGCVAQQEGESLLRRVPELDLVMGPQHANRLETLLQQVDSG 187

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           ++VV T+       E ++       R   +  ++ +  GC++ CT+CVVP  RG E SR 
Sbjct: 188 QQVVATEE--HHILEDITTA----RRDSAICGWVNVIYGCNERCTYCVVPSVRGQEQSRQ 241

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG------EKCTFSDLLYSLSEIKGL 260
              +  E   L   G  EITLLGQN++A+ G+ L G       + T +DLL+ + +++GL
Sbjct: 242 PGAIRLEMEGLAAQGFKEITLLGQNIDAY-GRDLPGITAEGRREHTLTDLLHQVHDVEGL 300

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            RLR+ TSHPR  ++ LI A  DL  +  + H+P QSG + +LKSM R +T   YR+IID
Sbjct: 301 ERLRFATSHPRYFTERLIDACADLPKVCEHFHIPFQSGDNELLKSMARGYTVERYRRIID 360

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           RIR   PD +IS+D IVGFPGETD  +R T++L+D+I + Q  +  YSPR  TP +    
Sbjct: 361 RIRDRMPDASISADVIVGFPGETDAQYRRTLNLIDEIAFDQVNTAAYSPRPNTPAATWDN 420

Query: 381 QVDENVKAERL----LCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRS--- 432
           Q+ E+VK ERL      +++  RE+   +     G+  EVL E  + K+  +L+GR+   
Sbjct: 421 QLSESVKVERLKEINALVERNARERNARYQ----GRTEEVLAEGINPKDPEQLMGRTRTN 476

Query: 433 --PWLQSVVLNSKNHNIGDIIKVRITDVKISTLYG 465
              +  +   +   +  GD++ VRI  V+  +L G
Sbjct: 477 RLTFFSATSADGHLYQPGDLVNVRIDAVRSFSLSG 511


>gi|317506460|ref|ZP_07964261.1| MiaB family RNA modification enzyme [Segniliparus rugosus ATCC
           BAA-974]
 gi|316255221|gb|EFV14490.1| MiaB family RNA modification enzyme [Segniliparus rugosus ATCC
           BAA-974]
          Length = 519

 Score =  287 bits (734), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 159/463 (34%), Positives = 268/463 (57%), Gaps = 38/463 (8%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           + ++++GCQMNV+DS R+  +  + G+ +      AD++V NTC +RE A +++Y  LG 
Sbjct: 29  YELRTFGCQMNVHDSERLAGLLEADGHVKAEPGQTADVVVFNTCAVRENADDRLYGTLGH 88

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           +R +K++       + + V GC+AQ +G+ +LR++P V+VV G      LP LL RA   
Sbjct: 89  LRPVKDANP----GMQIAVGGCLAQKDGDTVLRKAPWVDVVFGTHNIGSLPALLRRAAHN 144

Query: 147 K----RVVDTDYSVEDKF--ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           +     +VD+  +       +R S+  G          +++I  GC+  CTFC+VP  RG
Sbjct: 145 QAAQVEIVDSLQAFPSTLPSKRDSLHAG----------WVSIAVGCNNTCTFCIVPSLRG 194

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG----KGLDGEKCTFSDLLYSLSE 256
            ++ R+  ++  E R L+  GV E+TLLGQNVNA+        L  ++  F+ LL S+ E
Sbjct: 195 KQLDRAPEEIAAEVRALVAEGVLEVTLLGQNVNAYGSSFADPALARDRGAFAKLLRSMGE 254

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           I+GL R+R+T+ HP + ++ ++ A  +   + P+LH+P+QSGSDRILK+M R + + ++ 
Sbjct: 255 IEGLERVRFTSPHPAEFTEDVVLAMAETPNVCPHLHMPLQSGSDRILKAMRRSYRSAKFL 314

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
            I+ R+R + PD AI++D IVGFPGET++DF+ T+++V +  +A A++F+YS R GTP +
Sbjct: 315 GIVRRVRELLPDAAITTDIIVGFPGETEEDFQQTLEVVAEARFASAYTFQYSKRPGTPAA 374

Query: 377 NMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIE-----KHGKEKGKL 428
            + +QV + V AE   RL+ LQ+++  ++   N   +G+ +E+++      K   +  +L
Sbjct: 375 ELPDQVAKEVVAERYQRLVDLQERICLEE---NRKQLGREVELVVAAPHEGKKNAQTARL 431

Query: 429 VGRSP---WLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            GR+     +    L       GD +  RI       L GE V
Sbjct: 432 SGRAKDGRLVHFSPLPGAQPRPGDFVVARIAHAAPHHLIGEAV 474


>gi|257056745|ref|YP_003134577.1| (dimethylallyl)adenosine tRNA methylthiotransferase
           [Saccharomonospora viridis DSM 43017]
 gi|256586617|gb|ACU97750.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Saccharomonospora viridis
           DSM 43017]
          Length = 494

 Score =  287 bits (734), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 164/445 (36%), Positives = 254/445 (57%), Gaps = 30/445 (6%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           + ++++GCQMNV+DS R+       GY      + AD++VLNTC +RE A  K+Y  LG 
Sbjct: 5   YTIRTFGCQMNVHDSERLAGQLEEAGYSLAAEGEQADVVVLNTCAVRENADNKLYGHLGH 64

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           +R  K +       + + V GC+AQ +  EI+RR+P V+VV G      LP LLERAR  
Sbjct: 65  LRAAKAANP----GMQIAVGGCLAQKDRGEIVRRAPWVDVVFGTHNLGSLPVLLERARHN 120

Query: 147 KRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
               V+   ++E     L        R+   + +++I  GC+  CTFC+VP  RG E  R
Sbjct: 121 AEAQVEIVEALETFPSTLPA-----RRESAYSGWVSISVGCNNTCTFCIVPSLRGKERDR 175

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLR 264
              +++ E   L+  GV E+TLLGQNVN++   G++ G++  F  LL S   I GL R+R
Sbjct: 176 RPGEILAEVEALVAEGVLEVTLLGQNVNSY---GVEFGDRYAFGKLLRSCGSIDGLERVR 232

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +T+ HP   +D +I A  +   +   LH+P+QSGSDR+LK+M R + +  +  I+D++R+
Sbjct: 233 FTSPHPAAFTDDVIDAMAETPNVCHQLHMPLQSGSDRVLKAMRRSYRSARFLSILDKVRA 292

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             PD AI++D IVGFPGET++DF+ T+++V +  ++ AF+F+YSPR GTP + M +QV +
Sbjct: 293 AMPDAAITTDIIVGFPGETEEDFQQTLEVVRQARFSSAFTFQYSPRPGTPAAEMPDQVPK 352

Query: 385 NVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIE----KHGKEKGKLVGRSPWLQS 437
            V  E   RL+ LQ  +  Q+   N   VG  +E+L+     +   E  ++ GR+   + 
Sbjct: 353 EVVQERYDRLVELQNDISWQE---NRKLVGTTVELLVATGEGRKDAETHRMSGRARDGRL 409

Query: 438 VVLNSKNHNI------GDIIKVRIT 456
           V    +   I      GDI++  IT
Sbjct: 410 VHFTPRGDAIDRKIRPGDIVETTIT 434


>gi|187735351|ref|YP_001877463.1| RNA modification enzyme, MiaB family [Akkermansia muciniphila ATCC
           BAA-835]
 gi|229890497|sp|B2UQE7|MIAB_AKKM8 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|187425403|gb|ACD04682.1| RNA modification enzyme, MiaB family [Akkermansia muciniphila ATCC
           BAA-835]
          Length = 458

 Score =  287 bits (734), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 165/454 (36%), Positives = 266/454 (58%), Gaps = 19/454 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + ++K+YGCQMN  DS ++  MF  +GY   +  D+AD+I+ N+C IRE+A +K    +G
Sbjct: 3   KLYIKTYGCQMNERDSEQVARMFVQKGYTMTDREDEADVILFNSCSIREQAEQKALGKMG 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE---R 142
            +   +  R      ++  + GC+AQ++ EE+ +  P +++VVG Q Y+R+ E ++   R
Sbjct: 63  LLAKQQRHR----PHVVYGMMGCMAQSKKEELFKELPRLDLVVGTQKYHRVFEHVDGILR 118

Query: 143 ARFGKRV--VDTDYS------VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCV 194
           AR  +R+  + T +S      V ++ +  + +    N     TA+++I +GC+  C +C+
Sbjct: 119 ARQERRMDELQTAFSGTHVCDVAEEADSQNRIRDHLNPGVRSTAYVSIMQGCEMKCAYCI 178

Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD--GEKCTFSDLLY 252
           VPYTRG E SR +  VVDE + L D GV E+TLLGQ VN + G+ ++  G K  F  LL 
Sbjct: 179 VPYTRGAERSRPIRDVVDEVKMLADAGVKEVTLLGQIVNRY-GRQMETAGGKGGFVQLLE 237

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
           ++ E++G+ R+R+ + HP      L++A   L  L  ++H P+QSGSDRILK M R +  
Sbjct: 238 AVHEVEGIRRIRFVSPHPIGFRQDLVQAFTYLPKLCSHIHFPMQSGSDRILKMMRRPYRN 297

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
             Y  +  R++  RPD++I++D IVGFPGET++D+  T   V+++ +  AF F+YSPR G
Sbjct: 298 ETYLDLCSRMKQARPDLSITTDIIVGFPGETEEDYLLTRQAVEQVQFDNAFIFRYSPRRG 357

Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGR 431
           TP + M  Q+ E VK  R   L   + E  +  N   VG + EVL+E   K    +L GR
Sbjct: 358 TPAAVMENQIPEEVKEARNQDLLAVVNEIAIRKNRDLVGTVQEVLLEGPSKTNAARLSGR 417

Query: 432 SPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYG 465
           +   + V++++     G+I+ +RI +    TLYG
Sbjct: 418 TSQNKPVMVDAAPDLAGEILPIRIEESTGFTLYG 451


>gi|86607496|ref|YP_476259.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Synechococcus
           sp. JA-3-3Ab]
 gi|123504633|sp|Q2JQX6|MIAB_SYNJA RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|86556038|gb|ABD00996.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Synechococcus sp.
           JA-3-3Ab]
          Length = 453

 Score =  287 bits (734), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 168/446 (37%), Positives = 257/446 (57%), Gaps = 18/446 (4%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           ++  ++GCQMN  DS RM  +  S GY        ADL++ NTC IR+ A +KVYS+LG 
Sbjct: 6   YYTITFGCQMNRADSERMAGILESLGYVPAEDELQADLVLFNTCTIRDNAEQKVYSYLG- 64

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
              ++  R ++   + ++VAGCVAQ EGE +LRR P +++V+GPQ   RL +LL +   G
Sbjct: 65  ---IQAQRKRKNPAIKLIVAGCVAQQEGERLLRRVPELDLVMGPQYVNRLGDLLAQVEAG 121

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRG--VTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            +VV T        E + I +     +R   VTA++ +  GC++ CT+C+VP  RG E S
Sbjct: 122 NQVVAT--------EPVEIPEDITKPRRDSRVTAWINVIYGCNERCTYCIVPLVRGREQS 173

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R    +  E   +   G  E+TLLGQN++A+ G+ LD  K   + LL  +  ++G+ R+R
Sbjct: 174 RQPQAIRAEIEDVARAGYREVTLLGQNIDAY-GRDLD-PKTNLASLLRFVHSVEGIERIR 231

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           + TSHPR  ++ LI    +L  +  + H+P Q+GSD +LK M R +T   YRQ+I  IR 
Sbjct: 232 FATSHPRYFTEELIATCAELPKVCEHFHIPFQAGSDAVLKRMRRGYTQERYRQLIQLIRQ 291

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             P+  IS+D IVGFPGET+  F+ T+ LV  IG+    +  YSPR GTP +   +QV E
Sbjct: 292 YMPEATISADAIVGFPGETEAQFQETLQLVQDIGFDFLNTAAYSPRPGTPAAEWPDQVPE 351

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSPWLQSVVLNSK 443
             K++RL  L + + E   + +   +GQ+ EVL+E  + K   + +GR+   + V  +  
Sbjct: 352 EEKSDRLQRLNRLVAEVAAARSARLLGQVQEVLVEGPNPKNPRQAMGRTRGNRIVFFDGD 411

Query: 444 NHNI-GDIIKVRITDVKISTLYGELV 468
              + G ++ VRIT  +  +L GE+V
Sbjct: 412 PEQLQGSLVPVRITATRAFSLSGEIV 437


>gi|317131675|ref|YP_004090989.1| RNA modification enzyme, MiaB family [Ethanoligenens harbinense
           YUAN-3]
 gi|315469654|gb|ADU26258.1| RNA modification enzyme, MiaB family [Ethanoligenens harbinense
           YUAN-3]
          Length = 467

 Score =  286 bits (733), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 173/450 (38%), Positives = 255/450 (56%), Gaps = 25/450 (5%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
            P++ +V++YGCQ NV DS ++  M    GY   +S  DADL++ NTC +RE A ++V  
Sbjct: 27  APKKAYVRTYGCQQNVSDSEKLSGMLSEMGYVFTDSPKDADLVLFNTCAVREHAEQRVLG 86

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAE--GEEILRRSPIVNVVVGPQTYYRLPELL 140
            +G ++  K  +     D+L+ + GC+ Q     E+I +  P V++V G     R PELL
Sbjct: 87  NVGALKGFKAKKP----DMLIALCGCMMQERHVSEKIKQSYPYVDLVFGTGALPRFPELL 142

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGV-TAFLTIQEGCDKFCTFCVVPYTR 199
            RA      +  +  V D  E+  +V+G   R+ G  TA+L +  GC+ FCT+C+VPY R
Sbjct: 143 WRA------LTENGRVFDLEEQNGVVEGVPVRRDGAYTAWLPVMNGCNNFCTYCIVPYVR 196

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G E SR+  QV+ EA +L+  GV ++TLLGQNVN++ GK L  +   F+ LL  L+ + G
Sbjct: 197 GREHSRAPEQVLREAEELLAAGVKDLTLLGQNVNSY-GKNLQND-WDFAKLLEKLAALPG 254

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
             RL + TSHP+D S  L         +   LHLP QSGSDRIL+ MNR +TA +YR+++
Sbjct: 255 EFRLHFMTSHPKDASHRLFDTIAANPKISRRLHLPFQSGSDRILRQMNRGYTAAQYRELV 314

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
              ++  P + ++SD IVGFPGET +DF+ T+ LV+++G+A  ++F YSPR GTP + M 
Sbjct: 315 AYAKAAIPGLCLTSDVIVGFPGETCEDFKQTLALVEEVGFANLYTFLYSPRKGTPAAEMP 374

Query: 380 EQVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQ 436
           + V    KA   E LL  Q     +  +F ++ VG    VL E    E G   G +    
Sbjct: 375 DPVAREEKARWFEELLAAQGV---KSRAFLESHVGMAGRVLAEN--VENGLAAGHTD--S 427

Query: 437 SVVLNSKNHNIGDIIKVRITDVKISTLYGE 466
            V ++      G   +V  T+VK  TL GE
Sbjct: 428 GVAVSFPAPAAGRFYEVSFTEVKGVTLLGE 457


>gi|306822499|ref|ZP_07455877.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bifidobacterium dentium
           ATCC 27679]
 gi|304554044|gb|EFM41953.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bifidobacterium dentium
           ATCC 27679]
          Length = 503

 Score =  286 bits (733), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 162/400 (40%), Positives = 245/400 (61%), Gaps = 23/400 (5%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNS---MD-DADLIVLNTCHIREKAAEKVYS 82
           F+V + GCQMNV+DS R+  +  S GY        MD D DLIV+NTC +RE AAE++Y 
Sbjct: 50  FYVHTLGCQMNVHDSERIAGVLESAGYVPATEEQYMDHDVDLIVMNTCAVRENAAERMYG 109

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +G    +K  R     +L + V GC+AQ + E I  ++P V+ V G +    LP+LL++
Sbjct: 110 TIGLWAEMKRER----PNLQIAVGGCMAQLDRERIAEKAPWVDAVFGTKNIGSLPQLLDQ 165

Query: 143 ARF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           AR  G   V  +  +     +L       +R   V++++ I  GC+  CTFC+VP TRG 
Sbjct: 166 ARVQGHAQVKVEEELNYFPSQLPT-----DRASRVSSWVAISVGCNNTCTFCIVPTTRGK 220

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E  R    ++ E R+ +D G  EITLLGQNVN++ G G+ G++  FS LL +  EI+GL 
Sbjct: 221 EHDRRPGDILAEIRQCVDEGAKEITLLGQNVNSF-GYGI-GDRFAFSKLLRACGEIEGLE 278

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+T+ HP   +D +I A  +   +M  LH P+QSGSDRIL++M R + + ++  I+ +
Sbjct: 279 RVRFTSPHPAAFTDDVIAAMAETPNVMHQLHFPLQSGSDRILRAMRRSYRSAKFLDILRK 338

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           IR   PD  IS+D IVGFPGET++DF+ TM +V++  ++ AF+F YSPR GTP + M EQ
Sbjct: 339 IREAMPDAQISTDIIVGFPGETEEDFQETMRVVEEARFSSAFTFIYSPRPGTPAAEM-EQ 397

Query: 382 VDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLI 418
           V  +V   + ERL+ LQ+++ E+ +   +   G+ +EV++
Sbjct: 398 VPHDVVQNRFERLVALQERITEENLKIFE---GRDVEVMV 434


>gi|256424882|ref|YP_003125535.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Chitinophaga
           pinensis DSM 2588]
 gi|256039790|gb|ACU63334.1| RNA modification enzyme, MiaB family [Chitinophaga pinensis DSM
           2588]
          Length = 473

 Score =  286 bits (733), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 168/445 (37%), Positives = 259/445 (58%), Gaps = 11/445 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++F+++SYGCQMN  DS  +  +   +G+    ++++A L++LNTC IREKA   V   L
Sbjct: 30  KKFYIESYGCQMNFNDSEIVASILKEEGFGPTRNVEEASLVLLNTCSIREKAETTVRKRL 89

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
              R +K    +   +LLV V GC+A+    ++L    +V++VVGP  Y  LP L+E A 
Sbjct: 90  TEFRKIK----QRNPELLVGVLGCMAERLKAKLLEEEKLVDMVVGPDAYRTLPALIEEAE 145

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G++ V+   S E+ +  +S V    N   GVTAF++I  GC+  C+FCVVP+TRG E S
Sbjct: 146 TGQKAVNVLLSREETYGDISPVRLDSN---GVTAFVSIMRGCNNMCSFCVVPFTRGRERS 202

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNA--WRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           R  + ++ EA  + + G  E+TLLGQNV++  W     D +  TF++LL +++ I  L+R
Sbjct: 203 RDKASILQEATDMFNRGYREVTLLGQNVDSYYWVSPDNDNDITTFANLLEAVALISPLLR 262

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R++TSHP+D++D ++      + +  Y+HLP+QSGS RIL+ MNR +T   Y + +DRI
Sbjct: 263 VRFSTSHPKDITDDVLYTMAKYENICKYIHLPMQSGSTRILQLMNRTYTREWYIKKVDRI 322

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE-Q 381
           R + P  A+S+D I GF  ET++D + TM L+D   Y  A+ F YS R GT  +   +  
Sbjct: 323 REILPGCALSTDVITGFCTETEEDHQDTMTLMDYGQYDLAYMFFYSERPGTLAARRYQDD 382

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVL 440
           V E VK  RL  +    R Q +      VG+  +VLIE   K  + +L GR+   + VV 
Sbjct: 383 VPEEVKKRRLSEIVDLHRAQSLKSMQQDVGKTFKVLIEGVSKRSEDQLFGRTDHNKVVVF 442

Query: 441 NSKNHNIGDIIKVRITDVKISTLYG 465
             ++   G+ I V++ D    TL G
Sbjct: 443 PKEDFRKGEYIWVKVEDCTAGTLLG 467


>gi|198274122|ref|ZP_03206654.1| hypothetical protein BACPLE_00259 [Bacteroides plebeius DSM 17135]
 gi|198273200|gb|EDY97469.1| hypothetical protein BACPLE_00259 [Bacteroides plebeius DSM 17135]
          Length = 457

 Score =  286 bits (733), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 165/448 (36%), Positives = 264/448 (58%), Gaps = 21/448 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F+++YGCQMNV DS  +  +    GY   +++++AD + +NTC IR+ A +K+ + L
Sbjct: 19  KKLFIETYGCQMNVADSEVIASIMQMAGYSPCDTLEEADAVFMNTCSIRDNAEQKILNRL 78

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
               +L+  R     +L+V V GC+A+    E++ +   V++V GP  Y  LP+L+    
Sbjct: 79  EFFHSLRKKR----KNLIVGVLGCMAERVKNELIEKHH-VDLVAGPDAYLTLPDLIAAVE 133

Query: 145 FGKRVVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            G++ ++ + S  + +  +  S + G +     ++ F++I  GC+ FC +C+VPYTRG E
Sbjct: 134 AGEKAINVELSTTETYRDVIPSRICGNH-----ISGFVSIMRGCNNFCHYCIVPYTRGRE 188

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR +  +++E R L   G  E+TLLGQNVN++R +  DG+  TF  LL  ++E    +R
Sbjct: 189 RSRDVESILNEVRDLQRKGYKEVTLLGQNVNSYRFEK-DGQTVTFPMLLRIVAEAVPDMR 247

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP+DMSD  +    ++  +  ++HLPVQSGS RILK MNR++T   Y + +  I
Sbjct: 248 VRFTTSHPKDMSDETLHVIAEVPNVCKHIHLPVQSGSSRILKLMNRKYTREWYLERVAAI 307

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML-EQ 381
           R + PD  +S+D   GF  ET++D + ++ L+ +  Y  AF FKYS R GT  S  L + 
Sbjct: 308 RRIIPDCGLSTDIFSGFHSETEEDHQMSLSLMRECAYDSAFMFKYSERPGTYASKHLPDD 367

Query: 382 VDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQS 437
           V E +K  RL   + LQ +L  +    N   VG+  EVL+E   K  K +L GR+   + 
Sbjct: 368 VPEEIKIRRLNEMIELQNQLSAES---NAKDVGKTFEVLVEGVSKRSKEQLFGRTEQNKV 424

Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYG 465
           VV +  +H IGD +KV+IT+   +TL G
Sbjct: 425 VVFDRGSHRIGDFVKVKITESSSATLKG 452


>gi|261878931|ref|ZP_06005358.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella bergensis DSM
           17361]
 gi|270334514|gb|EFA45300.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella bergensis DSM
           17361]
          Length = 452

 Score =  286 bits (733), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 164/458 (35%), Positives = 271/458 (59%), Gaps = 22/458 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ ++++YGCQMNV DS  +  +    GYE  ++ D+AD I LNTC IRE A  K+Y  L
Sbjct: 3   KKLYIETYGCQMNVADSEVVASVMKMAGYELTDNEDEADAIFLNTCSIRENAENKIYHRL 62

Query: 85  GRIRNLKNSRIKEGGDL-----LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL 139
             +   +  R  E  +      ++ V GC+A+   +++++     N+V GP  Y  LPE+
Sbjct: 63  DALHAEQRKRAVETQNPKCPTPILGVLGCMAERVKDDLVKNHH-ANLVCGPDAYLNLPEM 121

Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           +     G+  VD   S  + +  +     G NR   ++ F++I  GC+ FC +C+VP+TR
Sbjct: 122 IAAVEMGQEAVDVQLSTTETYRDIIPQRIGGNR---ISGFVSIMRGCNNFCHYCIVPFTR 178

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK----CTFSDLLYSLS 255
           G E SR +  ++ E   L D G  E+TLLGQNVN++ G   +G++     +F++LL  ++
Sbjct: 179 GRERSRDVESILKEVHDLHDKGFKEVTLLGQNVNSY-GLLPNGKRPENGTSFAELLRLVA 237

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
                +R+R+TTS+P DM++ +I+A  D   L  ++H PVQSGS +ILK MNR++T  +Y
Sbjct: 238 REVPDMRVRFTTSNPEDMTEDIIQAVADEPNLCNHIHFPVQSGSSKILKLMNRKYTREDY 297

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
            + +  IR + PD  +++D  VG+  ET++D + T+DL+ ++G+  AF FKYS R GT  
Sbjct: 298 LEKVAAIRRIIPDCGLTTDVFVGYHDETEEDHQMTLDLMREVGFDSAFMFKYSERPGTYA 357

Query: 376 SNML-EQVDENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVG 430
           +  L + V E VK  R   L+ LQ ++  +Q   N    G+  E+L+E+  K  + +L+G
Sbjct: 358 AKHLPDNVPEEVKVRRLNELIQLQTQISAEQ---NKKDEGKEFEILLERFSKRSRQQLMG 414

Query: 431 RSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           R+P  ++V+++   H+IG+ +KVRIT    +TL+GE +
Sbjct: 415 RTPQNKAVLVDKGTHHIGETMKVRITGSSSATLFGEEI 452


>gi|309801462|ref|ZP_07695589.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bifidobacterium dentium
           JCVIHMP022]
 gi|308221977|gb|EFO78262.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bifidobacterium dentium
           JCVIHMP022]
          Length = 484

 Score =  286 bits (733), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 162/400 (40%), Positives = 245/400 (61%), Gaps = 23/400 (5%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNS---MD-DADLIVLNTCHIREKAAEKVYS 82
           F+V + GCQMNV+DS R+  +  S GY        MD D DLIV+NTC +RE AAE++Y 
Sbjct: 31  FYVHTLGCQMNVHDSERIAGVLESAGYVPATEEQYMDHDVDLIVMNTCAVRENAAERMYG 90

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +G    +K  R     +L + V GC+AQ + E I  ++P V+ V G +    LP+LL++
Sbjct: 91  TIGLWAEMKRER----PNLQIAVGGCMAQLDRERIAEKAPWVDAVFGTKNIGSLPQLLDQ 146

Query: 143 ARF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           AR  G   V  +  +     +L       +R   V++++ I  GC+  CTFC+VP TRG 
Sbjct: 147 ARVQGHAQVKVEEELNYFPSQLPT-----DRASRVSSWVAISVGCNNTCTFCIVPTTRGK 201

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E  R    ++ E R+ +D G  EITLLGQNVN++ G G+ G++  FS LL +  EI+GL 
Sbjct: 202 EHDRRPGDILAEIRQCVDEGAKEITLLGQNVNSF-GYGI-GDRFAFSKLLRACGEIEGLE 259

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+T+ HP   +D +I A  +   +M  LH P+QSGSDRIL++M R + + ++  I+ +
Sbjct: 260 RVRFTSPHPAAFTDDVIAAMAETPNVMHQLHFPLQSGSDRILRAMRRSYRSAKFLDILRK 319

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           IR   PD  IS+D IVGFPGET++DF+ TM +V++  ++ AF+F YSPR GTP + M EQ
Sbjct: 320 IREAMPDAQISTDIIVGFPGETEEDFQETMRVVEEARFSSAFTFIYSPRPGTPAAEM-EQ 378

Query: 382 VDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLI 418
           V  +V   + ERL+ LQ+++ E+ +   +   G+ +EV++
Sbjct: 379 VPHDVVQNRFERLVALQERITEENLKIFE---GRDVEVMV 415


>gi|326773675|ref|ZP_08232958.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Actinomyces viscosus
           C505]
 gi|326636905|gb|EGE37808.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Actinomyces viscosus
           C505]
          Length = 553

 Score =  286 bits (732), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 153/412 (37%), Positives = 247/412 (59%), Gaps = 26/412 (6%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDA------------DLIVLNTC 70
           +P+ + V++ GCQMNV+DS  M  +    GY RV  + +A            D++++NTC
Sbjct: 17  LPRTYHVRTLGCQMNVHDSEHMAGLLERAGYLRVEDVPEAASRATDAGDGGADVVIINTC 76

Query: 71  HIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGP 130
            +RE AA +++  LG++  +K  R      + + VAGC+AQ  GE I+ R+P V+VV G 
Sbjct: 77  SVRENAATRLFGNLGQLAAVKRERPG----MQIAVAGCLAQQMGEGIVERAPWVDVVFGT 132

Query: 131 QTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKR--GVTAFLTIQEGCDK 188
                LP LLERAR      ++  +VE + E L +       +R     A+++I  GC+ 
Sbjct: 133 HNLDVLPALLERARH-----NSAAAVELE-ESLKVFPSTLPTRRESSYAAWVSIAVGCNN 186

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS 248
            CTFC+VP  RG +  R    V+ E   +   G  E+TLLGQNVN++ G G  G++  F+
Sbjct: 187 TCTFCIVPSLRGKQRDRRPGDVLAEVEAVAAQGAIEVTLLGQNVNSY-GVGF-GDRGAFA 244

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
            LL +   ++G+ R+R+T+ HP   +D +I+A    + +MP LH+P+QSGSDR+L++M R
Sbjct: 245 KLLRAAGSVEGIERVRFTSPHPAAFTDDVIEAMATTEAVMPSLHMPLQSGSDRVLRAMRR 304

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
            +    +  I+D++R+V P+ AI++D IVGFPGET++DF+AT+D+V++  +A A++F+YS
Sbjct: 305 SYRTQRFLGILDKVRAVMPEAAITTDIIVGFPGETEEDFQATLDVVEQARFASAYTFEYS 364

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
           PR GTP ++  +QV   V  +R   L   +R      N+   G+++EVL+ +
Sbjct: 365 PRPGTPAADRDDQVPTEVVKDRYRRLDALVRRIAHEENERQEGRVVEVLVAE 416


>gi|300780998|ref|ZP_07090852.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Corynebacterium
           genitalium ATCC 33030]
 gi|300532705|gb|EFK53766.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Corynebacterium
           genitalium ATCC 33030]
          Length = 520

 Score =  286 bits (732), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 161/453 (35%), Positives = 264/453 (58%), Gaps = 29/453 (6%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+ + V+++GCQMNV+DS R+  +    GY      DDADLIV NTC +RE A +++Y  
Sbjct: 15  PRTYEVRTFGCQMNVHDSERLSGLLEDAGYVAATD-DDADLIVFNTCAVRENADKRLYGT 73

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LG +R+ K    +    + + V GC+AQ + + ++ ++P V+ V G      LP LL+RA
Sbjct: 74  LGALRDKK----RHHPGMQIAVGGCLAQKDRDTVVEKAPWVDAVFGTHNMSALPALLDRA 129

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           R  +          + F   S++     R+     ++++  GC+  CTFC+VP  RG E 
Sbjct: 130 RVEEEAQVEVVESLEVFP--SVLPA--KRESSYAGWVSVSVGCNNTCTFCIVPSLRGKEQ 185

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE----KCTFSDLLYSLSEIKG 259
            R    ++ E + L+D GV E+TLLGQNVNA+    +D +    +  FS L  +  EI+G
Sbjct: 186 DRRPGDILAEVQALVDQGVSEVTLLGQNVNAYGVNFVDPDMPRDRSAFSKLPRACGEIEG 245

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           L RLR+T+ HP + +  +I A  +   + P LH+P+QSGSD++LK M R + + ++  I+
Sbjct: 246 LERLRFTSPHPAEFTSDVIDAMAETPNICPQLHMPLQSGSDKVLKDMRRSYRSKKFLGIL 305

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
           D +R+  P  +I++D IVGFPGET++DF+AT+++V+K  +  A++F+YSPR GTP + M 
Sbjct: 306 DEVRAKLPHASITTDIIVGFPGETEEDFQATLNVVEKARFTSAYTFQYSPRPGTPAAEMD 365

Query: 380 EQVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG------KLVG 430
            QV + V   + ERLL LQ+++  ++   N   +G   E+L+++  ++K       +L G
Sbjct: 366 GQVPKEVVQERFERLLALQERISYEE---NLKLIGTSQELLVQETNEKKADRAQSTRLSG 422

Query: 431 RSPWLQSVVLNSKNH----NIGDIIKVRITDVK 459
           R+   + V  ++ +       GDI+ V ITD +
Sbjct: 423 RARDGRLVHFDAGSLIDAVRPGDIVHVTITDAR 455


>gi|227495170|ref|ZP_03925486.1| possible tRNA 2-methylthioadenine synthetase [Actinomyces
           coleocanis DSM 15436]
 gi|226831622|gb|EEH64005.1| possible tRNA 2-methylthioadenine synthetase [Actinomyces
           coleocanis DSM 15436]
          Length = 485

 Score =  286 bits (732), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 160/408 (39%), Positives = 250/408 (61%), Gaps = 35/408 (8%)

Query: 36  MNVYDSLRMEDMFFSQGYERVNSMDDA------------DLIVLNTCHIREKAAEKVYSF 83
           MNV+DS RM  +  + GY  V  + +A            D++V+NTC +RE AA +++  
Sbjct: 1   MNVHDSERMAGLLAADGYVPVEQVPEAAARATEAGDGGADVVVINTCSVRENAANRLFGN 60

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LG++ ++K +R     D+ + V GC+AQ    +I++++P V+VV G      LP LL+RA
Sbjct: 61  LGQLASVKKNR----PDMQIAVGGCLAQQMRADIVKKAPFVDVVFGTHNIDVLPVLLKRA 116

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRK--RGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           R  +     D +VE + E L +      +K      A+++I  GC+  CTFC+VP+ RG 
Sbjct: 117 RHNR-----DAAVEIE-ESLKVFPSTLPKKADSSYAAWVSISVGCNNTCTFCIVPHLRGK 170

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGL 260
           E  R   +V+ E   ++  G  E+TLLGQNVN++   G+  GE+  F+ LL +   I+GL
Sbjct: 171 ERDRRPGEVLAEIEAVVSEGAVEVTLLGQNVNSY---GVSFGERDAFAKLLRAAGNIEGL 227

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            RLR+T+ HP   SD +I+A  +   +MP LH+P+QSGSDRIL+ M R +   ++  I++
Sbjct: 228 ERLRFTSPHPAAFSDDVIRAMAETPTVMPSLHMPLQSGSDRILRMMRRSYRRAKFEGILE 287

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           R+R + PD AI++D IVGFPGET++DF+ T+++V+K  +A AF+F YSPR GTP ++M +
Sbjct: 288 RVRELIPDAAITTDIIVGFPGETEEDFQQTLEVVEKARFASAFTFLYSPRPGTPAADMED 347

Query: 381 QVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKE 424
           QV ++V AE   RLL LQ+K+  +++       G  +EVLI E  G++
Sbjct: 348 QVPDDVAAERYKRLLALQEKISFEEMQ---KLEGTTVEVLIAETEGRK 392


>gi|149198156|ref|ZP_01875203.1| hypothetical protein LNTAR_15882 [Lentisphaera araneosa HTCC2155]
 gi|149138758|gb|EDM27164.1| hypothetical protein LNTAR_15882 [Lentisphaera araneosa HTCC2155]
          Length = 452

 Score =  286 bits (732), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 163/454 (35%), Positives = 258/454 (56%), Gaps = 21/454 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++  +K+YGCQMN  DS  +E      GYE      DAD+I+LNTC +R++A  K    +
Sbjct: 4   EKVLIKTYGCQMNDRDSEAVEMDLLKSGYEITTEEKDADVIILNTCSVRDQAERKALGKV 63

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           G +  L+    K    L V V GC+AQ+  ++I+ ++  VN V G    +++PEL+E+++
Sbjct: 64  GSLIKLRRKNPK----LQVGVIGCMAQSRADDIVEKNAHVNFVAGTDQLHKIPELIEKSK 119

Query: 145 FGK-RVVDTDYSVEDKFERLSIVDGGYNRKRG-VTAFLTIQEGCDKFCTFCVVPYTRGIE 202
             +  +++T  S  D  ERL       N   G + A + I  GC+++CT+C+VP+TRG E
Sbjct: 120 DTEDALIETGLS-RDIMERLD------NHPEGQMNASVAIMRGCNEYCTYCIVPFTRGQE 172

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGEKCTFSDLLYSLSE 256
            SR+++ ++ E + L + GV EI  LGQN+ A+      R +  + E   F+ LL   ++
Sbjct: 173 KSRTIASIIAEVKALSEKGVREIMYLGQNITAYGLIEARRDRTFNKEVSPFAALLRETAK 232

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           I+G+ R+R+T+ H R  +D LI        +   +H P+QSGS+R+LK M RRHTA E+ 
Sbjct: 233 IEGIKRIRFTSPHARYFNDDLIDTIAAEPKICRAIHFPLQSGSNRLLKVMRRRHTAEEFL 292

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
             I++++     I  ++D IVGFPGET++DF+AT D+ ++I + Q F F+YS R  TP +
Sbjct: 293 SWINKMKERIDGITFTTDLIVGFPGETEEDFKATRDMCNEIDFDQQFIFRYSTRKNTPAA 352

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWL 435
            M  Q+DE  K ER   L K L E+    N+  VG I E+++E   K    K  GR+   
Sbjct: 353 QMPNQLDEETKIERNQILLKDLEERLTHKNEQRVGTIEEIMVEGVSKRNDDKWTGRTTNY 412

Query: 436 QSVVLNSKNH-NIGDIIKVRITDVKISTLYGELV 468
           + V+ + +    +GD+I ++I       LYG  V
Sbjct: 413 KIVIFDPQEDVKVGDLINIKIERATQHALYGSYV 446


>gi|257462249|ref|ZP_05626666.1| MIAB protein [Fusobacterium sp. D12]
 gi|317059918|ref|ZP_07924403.1| adenosine tRNA methylthiotransferase [Fusobacterium sp. D12]
 gi|313685594|gb|EFS22429.1| adenosine tRNA methylthiotransferase [Fusobacterium sp. D12]
          Length = 435

 Score =  286 bits (732), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 171/447 (38%), Positives = 263/447 (58%), Gaps = 24/447 (5%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V +YGCQMNV +S +M+ +F + GYE   ++ ++D I LNTC +RE AA ++Y  LG + 
Sbjct: 6   VITYGCQMNVNESAKMKKIFENLGYEITENIRESDAIFLNTCTVREGAATQIYGKLGELM 65

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE--RARFG 146
            +K  R       ++ V GC AQ +G+E+L++ P++++V+G Q   RLP+ +E    +  
Sbjct: 66  QIKAKR-----GSIIGVTGCFAQEQGKELLKKFPVIDIVMGNQNIGRLPQAIENIENQTE 120

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           K VV TD+  ED        D G ++    TA + I  GC+ FCTFC+VPY RG E S  
Sbjct: 121 KHVVFTDH--EDDLPPRLDADFGSDQ----TASIAISYGCNNFCTFCIVPYVRGRERSVP 174

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
           L ++V +  + +  G  EI LLGQNVN++     +G+  TF+ LL  + ++ G   +R+ 
Sbjct: 175 LEEIVRDVEQYVKKGAKEIMLLGQNVNSYGHDFKNGD--TFARLLTEICKVDGDFIVRFV 232

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
           + HPRD +D +I      + +   LHLP+QSGS +ILK MNR +T  +Y  +  +I++  
Sbjct: 233 SPHPRDFTDDVIDVIAKEEKIAKCLHLPLQSGSSQILKRMNRGYTKEQYLSLAHKIQNRI 292

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           P +A+++D IVGFPGET+ DF  T+++V +I Y  AF F YS R GT  + M EQV E+ 
Sbjct: 293 PGVALTTDIIVGFPGETEQDFLDTLEVVREINYDNAFMFMYSIRQGTRAATMQEQVPEDT 352

Query: 387 KAERLLCLQKKLREQQV--SFNDA--CVGQIIEVLIEKHGKE-KGKLVGRSPWLQSVVLN 441
           K ERL    +KL + Q   S+ ++    G+++ VL+E   K+ K  L GR+   + V+  
Sbjct: 353 KKERL----QKLMDVQARCSYKESQKYQGKVVRVLVEGESKKNKQVLSGRTSTNKIVLFQ 408

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
           +     G  + V I + K  TLYG+LV
Sbjct: 409 APISLKGSFVDVEIYECKTWTLYGKLV 435


>gi|296129399|ref|YP_003636649.1| RNA modification enzyme, MiaB family [Cellulomonas flavigena DSM
           20109]
 gi|296021214|gb|ADG74450.1| RNA modification enzyme, MiaB family [Cellulomonas flavigena DSM
           20109]
          Length = 538

 Score =  286 bits (732), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 163/419 (38%), Positives = 253/419 (60%), Gaps = 27/419 (6%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADL----IVLNTCHIREKAAEKVYS 82
           + VK+ GCQMNV+DS  M  M    GY   +  D A      +V+NTC +RE AA+K+Y 
Sbjct: 31  YHVKTLGCQMNVHDSEHMAGMLEQAGYVPADPADAAADDVDVLVINTCAVRENAADKLYG 90

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            LGR+   K SR    G + + V GC+AQ +   I+ R+P V+VV G      LP LLER
Sbjct: 91  NLGRLAGTKRSR---AGGMQIAVGGCLAQKDRAGIVERAPWVDVVFGTHNLDVLPTLLER 147

Query: 143 ARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTA-FLTIQEGCDKFCTFCVVPYTRG 200
           AR      V+ + S++     L        R+  V A +++I  GC+  CTFC+VP+ RG
Sbjct: 148 ARHNAAAQVEIEESLKVFPSTLP------TRRESVYAGWVSISVGCNNTCTFCIVPHLRG 201

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E  R    V+ E   L+  G  E+TLLGQNVN++ G G  G++  F  LL ++  + GL
Sbjct: 202 KERDRRPGDVLAEVEALVATGAIEVTLLGQNVNSY-GVGF-GDRHAFGKLLRAVGAVPGL 259

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+T+ HP   +D +I+A      +MP LH+P+QSGSDR+L++M R + A  +  I++
Sbjct: 260 ERVRFTSPHPAAFTDDVIEAMAATPTVMPQLHMPLQSGSDRVLRAMRRSYRADRFLGILE 319

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           R+R+  P  AI++D IVGFPGET++DFR T+ +V+   ++ AF+F+YSPR GTP +++ +
Sbjct: 320 RVRAAIPHAAITTDVIVGFPGETEEDFRETLRVVEASRFSSAFTFQYSPRPGTPAADLPD 379

Query: 381 QVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKG---KLVGRS 432
           Q+ + V   + ERL+ LQ+++  ++   N A VG+ ++VL+ +  G++ G   ++ GR+
Sbjct: 380 QLPKAVVQERYERLVALQERISAEE---NAAQVGRTVDVLVAQGEGRKDGATARISGRA 435


>gi|255994069|ref|ZP_05427204.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Eubacterium saphenum ATCC
           49989]
 gi|255993737|gb|EEU03826.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Eubacterium saphenum ATCC
           49989]
          Length = 440

 Score =  286 bits (731), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 174/444 (39%), Positives = 258/444 (58%), Gaps = 18/444 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           ++ + ++GCQMN  DS  +  +  S G     S+++AD++V+NTC IRE A  K Y  LG
Sbjct: 8   KYNIITFGCQMNERDSESIAGILKSHGLTSA-SIEEADIVVINTCSIRENANNKFYGTLG 66

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGE---EILRRSPIVNVVVGPQTYYRLPELLER 142
            ++N+K    K G DL+V V GC+ Q EGE   ++  R P V+V+ G     R+ +L+  
Sbjct: 67  IVKNIKKKLKKNGDDLVVCVCGCMMQ-EGEVVEDLKARFPFVDVIFGTHNIDRVYDLI-- 123

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
                + ++T     +  E   I +   +R     AF+ I  GC+ FCT+C+VPYTRG E
Sbjct: 124 ----IKTIETKRREIEILENAEIKEMPVDRVNKHKAFVNITFGCNNFCTYCIVPYTRGRE 179

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SRSL +++ E    +  G  E+T LGQNVN++RG+  +GE   F D+L   S+I+GL R
Sbjct: 180 KSRSLDKILGETADAVSLGAKEVTFLGQNVNSYRGE--NGE--NFRDVLVEASKIQGLER 235

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+ TSHP+D++D LI     LD +MP++HLPVQSGS  ILK MNR +    Y +IID+I
Sbjct: 236 IRFMTSHPKDLTDELIDVMS-LDKIMPHIHLPVQSGSSEILKRMNRHYDRERYLEIIDKI 294

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
            S+  DIAI++D IVGFP ET++DF  T+DLV +  +  AF+F YS R  T  +N   QV
Sbjct: 295 YSLNEDIAITTDIIVGFPTETEEDFSKTLDLVRRARFDAAFTFMYSKRRNTKAANFDGQV 354

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
           D      R   L + L++     N   +G+ I+V+++K   +  +  GRSP  + V    
Sbjct: 355 DRVEMGRRFDMLSELLKDISFEKNKKFIGRRIKVMVDKIEGDNAE--GRSPEFKLVKFYG 412

Query: 443 KNHNIGDIIKVRITDVKISTLYGE 466
           KN   GDI+ V +      +L G+
Sbjct: 413 KNIKKGDILDVVVDRASPFSLSGK 436


>gi|78212394|ref|YP_381173.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Synechococcus sp. CC9605]
 gi|123743350|sp|Q3ALB4|MIAB_SYNSC RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|78196853|gb|ABB34618.1| Protein of unknown function UPF0004 [Synechococcus sp. CC9605]
          Length = 464

 Score =  286 bits (731), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 178/463 (38%), Positives = 270/463 (58%), Gaps = 27/463 (5%)

Query: 18  VDQCIVPQR--FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREK 75
            D    PQR  +++ ++GCQMN  DS RM  +  + GY   ++  DADL++ NTC IR+ 
Sbjct: 9   TDATANPQRGSYWITTFGCQMNKADSERMAGILEAMGYREASAELDADLVLYNTCTIRDN 68

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135
           A +KVYS+LGR    +  R +   +L++VVAGCVAQ EGE +LRR P +++V+GPQ   R
Sbjct: 69  AEQKVYSYLGR----QAQRKRSNPNLILVVAGCVAQQEGESLLRRVPELDLVMGPQHANR 124

Query: 136 LPELLERARFGKRVVDT-DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCV 194
           L  LL +   G++VV T D+ +    E ++       R   +  ++ +  GC++ CT+CV
Sbjct: 125 LETLLLQVDSGQQVVATEDHHI---LEDITTA----RRDSSICGWVNVIYGCNERCTYCV 177

Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG------EKCTFS 248
           VP  RG E SR    +  E   L   G  EITLLGQN++A+ G+ L G       + T +
Sbjct: 178 VPSVRGKEQSRLPQAIKLEMEGLAAQGYKEITLLGQNIDAY-GRDLPGITPEGRRQHTLT 236

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
           DLL+ + +++G+ R+R+ TSHPR  ++ LI A  DL  L  + H+P QSG + +L++M R
Sbjct: 237 DLLHHVHDVEGIERIRFATSHPRYFTERLIDACADLPKLCEHFHIPFQSGDNDVLQAMAR 296

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
            +T   YR+IIDRIR   PD ++S+D IV FPGETD  +R T+DL+++IG+ Q  +  YS
Sbjct: 297 GYTVERYRRIIDRIRERMPDASLSADVIVAFPGETDAQYRRTLDLIEEIGFDQVNTAAYS 356

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGK 427
           PR  TP +N   Q+ E VK ERL  +   +       N    G+  EVL E  + K+  +
Sbjct: 357 PRPNTPAANWDNQLPEEVKVERLREINALVERCARKANARYEGRTEEVLAEGINPKDPSQ 416

Query: 428 LVGRS-----PWLQSVVLNSKNHNIGDIIKVRITDVKISTLYG 465
           L+GR+      +  +   +   +  GD+++VRI  V+  +L G
Sbjct: 417 LMGRTRTNRLTFFSATGADGHANKAGDLVQVRIDAVRSFSLSG 459


>gi|260435870|ref|ZP_05789840.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Synechococcus sp. WH
           8109]
 gi|260413744|gb|EEX07040.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Synechococcus sp. WH
           8109]
          Length = 464

 Score =  286 bits (731), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 178/463 (38%), Positives = 269/463 (58%), Gaps = 27/463 (5%)

Query: 18  VDQCIVPQR--FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREK 75
            D    PQR  +++ ++GCQMN  DS RM  +  + GY   ++  DADL++ NTC IR+ 
Sbjct: 9   TDATANPQRGSYWITTFGCQMNKADSERMAGILEAMGYREASAELDADLVLYNTCTIRDN 68

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135
           A +KVYS+LGR    +  R +   +L +VVAGCVAQ EGE +LRR P +++V+GPQ   R
Sbjct: 69  AEQKVYSYLGR----QAQRKRSNPNLTLVVAGCVAQQEGESLLRRVPELDLVMGPQHANR 124

Query: 136 LPELLERARFGKRVVDT-DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCV 194
           L  LL +   G++VV T D+ +    E ++       R   +  ++ +  GC++ CT+CV
Sbjct: 125 LETLLLQVDSGQQVVATEDHHI---LEDITTA----RRDSSICGWVNVIYGCNERCTYCV 177

Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG------EKCTFS 248
           VP  RG E SR    +  E   L   G  EITLLGQN++A+ G+ L G       + T +
Sbjct: 178 VPSVRGKEQSRLPEAIKLEMEGLAAQGYKEITLLGQNIDAY-GRDLPGITPEGRRQHTLT 236

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
           DLL+ + +++G+ R+R+ TSHPR  ++ LI A  DL  L  + H+P QSG + +L++M R
Sbjct: 237 DLLHHVHDVEGIERIRFATSHPRYFTERLIDACADLPKLCEHFHIPFQSGDNDVLQAMAR 296

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
            +T   YR+IIDRIR   PD ++S+D IV FPGETD  +R T+ L+++IG+ Q  +  YS
Sbjct: 297 GYTVERYRRIIDRIRERMPDASLSADVIVAFPGETDAQYRRTLHLIEEIGFDQVNTAAYS 356

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGK 427
           PR  TP +N   Q+ E VK ERL  +   +       N    G+  EVL E  + K   +
Sbjct: 357 PRPNTPAANWENQLPEEVKVERLREINALVERCARKANTRYEGRTEEVLAEGINPKAPSQ 416

Query: 428 LVGRS-----PWLQSVVLNSKNHNIGDIIKVRITDVKISTLYG 465
           L+GR+      +  S   + + +  GD+++VRI +V+  +L G
Sbjct: 417 LMGRTRTNRLTFFSSTGADGRAYKAGDLVEVRIDEVRSFSLSG 459


>gi|254495105|ref|ZP_05108029.1| tRNA-i(6)A37 modification enzyme MiaB [Polaribacter sp. MED152]
 gi|85819455|gb|EAQ40612.1| tRNA-i(6)A37 modification enzyme MiaB [Polaribacter sp. MED152]
          Length = 484

 Score =  286 bits (731), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 179/467 (38%), Positives = 266/467 (56%), Gaps = 38/467 (8%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F++SYGCQMN+ DS  +  +   +GY     +++ADL+++NTC IREKA   V   L
Sbjct: 27  KKLFIESYGCQMNMNDSEIVAAILDKEGYNTTQILEEADLVLVNTCSIREKAETTVRRRL 86

Query: 85  GRIRNLK--NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +   +K  N ++K G      V GC+A+   E+ L    IV++VVGP  Y  LP LLE 
Sbjct: 87  QKYNAVKQVNKKMKVG------VLGCMAERLKEKFLEEEKIVDLVVGPDAYKDLPNLLEE 140

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
              G+  V+   S E+ +  +S V    N   GV+AF++I  GCD  CTFCVVP+TRG E
Sbjct: 141 VYEGRDAVNVILSKEETYGDISPVRLNSN---GVSAFVSITRGCDNMCTFCVVPFTRGRE 197

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNA--WRGKGL--DGEKCT---------FSD 249
            SR    +++E ++++D    EITLLGQNV++  W G GL  D +K +         F+ 
Sbjct: 198 RSRDPKSILEEIQQMVDKNYKEITLLGQNVDSFLWYGGGLKKDFKKASEMAQATAVDFAQ 257

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
           LL   +      R R++TS+P+DMS  +I        +  Y+HLPVQSGS+ +LK+MNR+
Sbjct: 258 LLDMCATQFPKTRFRFSTSNPQDMSLDVIHVMAKHRNICKYIHLPVQSGSNAMLKAMNRQ 317

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369
           HT  EY +++D I  + P++A+S D IVGF GET+ D + T+DL++ + Y   F F YS 
Sbjct: 318 HTREEYMELVDNIFKIVPEMALSQDMIVGFCGETEQDHQDTLDLMEYVKYDFGFMFAYSE 377

Query: 370 RLGT-PGSNMLEQVDENVKAERL---LCLQKK---LREQQVSFNDACVGQIIEVLIEKHG 422
           R GT  G  M + V E VK  RL   + LQ+K    R QQ       +G++ EVLIE   
Sbjct: 378 RPGTLAGKKMEDDVPEAVKKRRLTEVIDLQQKHALYRTQQ------HLGKVEEVLIEGTS 431

Query: 423 KEK-GKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           K+   +  GR+     +V   +++ +GD + V++ D   +TL G  V
Sbjct: 432 KKNPNEWKGRNTQNTVIVFPKEHYKLGDFVNVKVEDCTSATLKGTAV 478


>gi|145219118|ref|YP_001129827.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Prosthecochloris
           vibrioformis DSM 265]
 gi|229890605|sp|A4SCW6|MIAB_PROVI RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|145205282|gb|ABP36325.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Chlorobium
           phaeovibrioides DSM 265]
          Length = 448

 Score =  286 bits (731), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 164/445 (36%), Positives = 252/445 (56%), Gaps = 22/445 (4%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           F++ ++GCQMN  DS  +  +    G+    S +DAD+++LNTC +RE A E++   L  
Sbjct: 9   FYIHTFGCQMNQADSAIITAILMDGGFRVAGSQEDADIVILNTCAVRENAVERITHQLQF 68

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           +R  K  +      LLV VAGCV Q    E+L   P+++ + GP TY  LP L+  A  G
Sbjct: 69  LRGAKRRK----KSLLVGVAGCVPQHLKREMLEMFPVIDFLAGPDTYRNLPALIGDAEEG 124

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           KR    ++ +E+ +  +  +     R+ GV AF+ +  GC+  C FCVVP+TRG E S+ 
Sbjct: 125 KRPAALEFRIEETYAGIDPL-----REVGVGAFVPVTRGCNNMCAFCVVPFTRGRERSQP 179

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
            S V+DE R++++ G  EITLLGQNVN++       E   F+ LL ++S      R+R+T
Sbjct: 180 FSAVMDEVRRVVEKGYGEITLLGQNVNSYADPE---EGRDFASLLRAVSREAPGCRIRFT 236

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
           TSHP+D+S  L+ A  D   +  ++HLPVQSGS R+L  MNR H   EY + +  +R   
Sbjct: 237 TSHPKDISPDLVDAIADSPNICNHVHLPVQSGSSRMLHRMNRGHGIDEYLETVALLRRRI 296

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML-EQVDEN 385
           P +++++D I GF GE D+D  AT+ L+ ++ Y  AF F YSPR GT     L + V   
Sbjct: 297 PGVSLTTDLIAGFCGEEDEDHEATLALLREVRYDNAFMFYYSPRFGTAAWKTLADTVPLA 356

Query: 386 VKAERLLCLQKKLREQQVSFNDAC----VGQIIEVLIEKHGKEKG-KLVGRSPWLQSVVL 440
           VK +RL    +++ + Q+S +  C    VG +++VL E   +    +L+GR+   ++VV 
Sbjct: 357 VKKQRL----QEIIDLQLSISAECLQEAVGSVVDVLAESESRRSTEQLMGRTGTNRAVVF 412

Query: 441 NSKNHNIGDIIKVRITDVKISTLYG 465
           +      GD + V I+    +TL G
Sbjct: 413 DRGGARPGDRVSVLISKASSATLTG 437


>gi|315651392|ref|ZP_07904417.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Eubacterium saburreum DSM
           3986]
 gi|315486351|gb|EFU76708.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Eubacterium saburreum DSM
           3986]
          Length = 485

 Score =  286 bits (731), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 164/437 (37%), Positives = 260/437 (59%), Gaps = 15/437 (3%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           + V ++GCQMN  DS ++  +    GY    S +DADL++ NTC +RE A +++Y   GR
Sbjct: 47  YKVVTFGCQMNARDSEKLSGILSGIGYTEAKSEEDADLVLFNTCTVRENANDRLY---GR 103

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQA--EGEEILRRSPIVNVVVGPQTYYRLPELL-ERA 143
           +  LK S+ K   D+++ + GC+ Q   E E+I +    V++V G    Y+L E+L +  
Sbjct: 104 VGQLKKSKEK-NPDMIIGICGCMMQEAEEVEKIKKSYRHVDLVFGTHNIYKLAEILFDHL 162

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           +  K++VD   S +   E+L        R+    + + I  GC+ FC++C+VPY RG E 
Sbjct: 163 KTKKQIVDVMESADMIVEKLP-----NKRQYAFKSGVNITFGCNNFCSYCIVPYVRGKER 217

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR   ++ DE + L+ +GV E+ LLGQNVN++ GKGLD EK  F+ LL  +++I GL RL
Sbjct: 218 SRKPEEITDEIKGLVADGVKEVMLLGQNVNSY-GKGLD-EKTNFAMLLDEVAKIDGLERL 275

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+ T HP+D+SD +I+   +   +  +LHLP+QSGS  ILK MNR +T   Y  ++ RI+
Sbjct: 276 RFMTPHPKDLSDEVIEVMKNNKKICKHLHLPLQSGSSAILKKMNRVYTKESYLDLVKRIK 335

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           +  PDI++++D IVGFPGET++DF  T+D+V ++ Y  AF+F YS R GTP + M EQ+D
Sbjct: 336 AAIPDISLTTDIIVGFPGETEEDFLDTLDVVKQVRYDSAFTFIYSKRSGTPAAKMEEQID 395

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRSPWLQSVVLNS 442
            ++  +R   L K +++          G+ + VL+E + +  +G L G+     +V    
Sbjct: 396 PDIIKDRFDRLLKTVQDIAAENTKKNEGKCMPVLVENNDEHLEGYLTGKLENNLTVHFKG 455

Query: 443 KNHNIGDIIKVRITDVK 459
               IG+I+ V + + K
Sbjct: 456 GKRLIGEIVDVVLDEAK 472


>gi|239617912|ref|YP_002941234.1| RNA modification enzyme, MiaB family [Kosmotoga olearia TBF 19.5.1]
 gi|239506743|gb|ACR80230.1| RNA modification enzyme, MiaB family [Kosmotoga olearia TBF 19.5.1]
          Length = 440

 Score =  286 bits (731), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 172/445 (38%), Positives = 268/445 (60%), Gaps = 24/445 (5%)

Query: 30  KSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRN 89
           +++GCQMNV D+  M  +  S GY  V++ ++AD++++NTC +REKA +K+Y  LGR+R+
Sbjct: 6   RTFGCQMNVNDTETMAGILKSNGYVIVDNEEEADVVIVNTCAVREKAEKKLYGKLGRLRS 65

Query: 90  LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149
           LK    K+  +L++ V+GCVA+ E E +L+R   VN V G ++  R+ E LERA  G+R 
Sbjct: 66  LK----KKNRNLIIGVSGCVAEKEKEALLKREE-VNFVFGTRSISRVNEFLERAIKGERF 120

Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVT--AFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
           V+    +++       ++    R R     A++TI  GC+KFC++C+VPYTRG E SRS+
Sbjct: 121 VELSDFIDE-------INSSTPRLRTSRHHAWVTIIYGCNKFCSYCIVPYTRGREKSRSM 173

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
             +++E ++L   G  E+T LGQNV+++ GK L  +  T + L+    +I+ + R+ Y T
Sbjct: 174 EDILNEVKRLASKGYREVTYLGQNVDSY-GKDL-ADGSTLAKLIRETLKIEQIERIWYLT 231

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
           S+P+D SD LI        +   +HLP+QSGS+RILK+MNR +T  EY  +I RIR+  P
Sbjct: 232 SYPKDFSDELIDVIATSKRVSRSIHLPIQSGSNRILKAMNRGYTREEYLDLIRRIRTKVP 291

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN-MLEQVDENV 386
           D +IS+D IVGFPGE++DD+  T  L++++ + +     YSPR GT  +  M + V   +
Sbjct: 292 DASISTDIIVGFPGESEDDYLQTKSLLEEVIFERVNLAIYSPREGTISAKYMKDDVPHEI 351

Query: 387 KAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
           K  R   LL LQK L  +    N   +G+ +E+++E   K+ G L GR+   + V  +  
Sbjct: 352 KVRRLQELLELQKCLNRK---INSEYIGKTVEIIVEAKHKD-GMLYGRTINNKIVFFHGS 407

Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468
              IG   K+ I       LYG+LV
Sbjct: 408 EELIGSKAKITIEKTTAGPLYGQLV 432


>gi|213416623|ref|ZP_03349767.1| hypothetical protein Salmonentericaenterica_01023 [Salmonella
           enterica subsp. enterica serovar Typhi str. E01-6750]
          Length = 297

 Score =  286 bits (731), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 146/305 (47%), Positives = 206/305 (67%), Gaps = 13/305 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS +M D+   + GY+  +  ++AD+++LNTC IREKA EKV+  
Sbjct: 3   KKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTDVAEEADVLLLNTCSIREKAQEKVFHQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR R LK    ++  DL++ V GCVA  EGE I +R+  V+++ GPQT +RLPE++   
Sbjct: 63  LGRWRLLK----EKNPDLIIGVGGCVASQEGEHIRQRAHYVDIIFGPQTLHRLPEMINSV 118

Query: 144 RFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           R G R  VVD  +   +KF+RL        R  G TAF++I EGC+K+CT+CVVPYTRG 
Sbjct: 119 R-GDRSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTYCVVPYTRGE 172

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E+SR    ++ E  +L   GV E+ LLGQNVNAWRG+  DG   TF+DLL  ++ I G+ 
Sbjct: 173 EVSRPSDDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTTGTFADLLRLVAAIDGID 232

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHP + +D +I+ + D   L+ +LHLPVQSGSDR+L  M R HTA EY+ II +
Sbjct: 233 RIRFTTSHPIEFTDDIIEVYRDTPELVSFLHLPVQSGSDRVLNLMGRTHTALEYKAIIRK 292

Query: 322 IRSVR 326
           +R+ R
Sbjct: 293 LRAAR 297


>gi|325068449|ref|ZP_08127122.1| RNA modification enzyme, MiaB family protein [Actinomyces oris K20]
          Length = 417

 Score =  286 bits (731), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 153/412 (37%), Positives = 246/412 (59%), Gaps = 26/412 (6%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDA------------DLIVLNTC 70
           +P+ + V++ GCQMNV+DS  M  +    GY RV  + +A            D++++NTC
Sbjct: 17  LPRTYHVRTLGCQMNVHDSEHMAGLLERAGYLRVEDVPEAAARATDAGDGGADVVIINTC 76

Query: 71  HIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGP 130
            +RE AA +++  LG++  +K  R      + + VAGC+AQ  GE I+ R+P V+VV G 
Sbjct: 77  SVRENAATRLFGNLGQLAAVKRERPG----MQIAVAGCLAQQMGEGIVERAPWVDVVFGT 132

Query: 131 QTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKR--GVTAFLTIQEGCDK 188
                LP LLERAR      ++  +VE + E L +       +R     A+++I  GC+ 
Sbjct: 133 HNLDVLPALLERARH-----NSAAAVELE-ESLKVFPSTLPTRRESSYAAWVSIAVGCNN 186

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS 248
            CTFC+VP  RG +  R    V+ E   +   G  E+TLLGQNVN++ G G  G++  F+
Sbjct: 187 TCTFCIVPSLRGKQRDRRPGDVLAEVEAVAAQGAIEVTLLGQNVNSY-GVGF-GDRGAFA 244

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
            LL +   ++G+ R+R+T+ HP   +D +I+A    + +MP LH+P+QSGSDR+L++M R
Sbjct: 245 KLLRAAGSVEGIERVRFTSPHPAAFTDDVIEAMATTEAVMPSLHMPLQSGSDRVLRAMRR 304

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
            +    +  I+D++R V P+ AI++D IVGFPGET++DF+AT+D+V++  +A A++F+YS
Sbjct: 305 SYRTQRFLGILDKVRDVMPEAAITTDIIVGFPGETEEDFQATLDVVEQARFASAYTFEYS 364

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
           PR GTP ++  +QV   V  +R   L   +R      N+   G+++EVL+ +
Sbjct: 365 PRPGTPAADRDDQVPTEVVKDRYRRLDALVRRIAHEENERQEGRVVEVLVAE 416


>gi|319952447|ref|YP_004163714.1| tRNA-i(6)a37 thiotransferase enzyme miab [Cellulophaga algicola DSM
           14237]
 gi|319421107|gb|ADV48216.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Cellulophaga algicola DSM
           14237]
          Length = 480

 Score =  286 bits (731), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 173/459 (37%), Positives = 261/459 (56%), Gaps = 22/459 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ +++SYGC MN  DS  +  +   +G+     +++ADL+++NTC IREKA   V   L
Sbjct: 24  RKLYIESYGCAMNFSDSEVVASILAKEGFNTTQILEEADLVLVNTCSIREKAELTVRKRL 83

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            +   +K +R      + V V GC+A+    + L    IV++VVGP  Y  LP L++   
Sbjct: 84  EKFNAVKKTR----PHMKVGVLGCMAERLKSKFLEEEKIVDMVVGPDAYKDLPNLIKEID 139

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G+  V+   S ++ +  +S V    N   GV+AF++I  GCD  CTFCVVP+TRG E S
Sbjct: 140 EGRDAVNVILSKDETYGDISPVRLQTN---GVSAFVSITRGCDNMCTFCVVPFTRGRERS 196

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNA--WRGKGL--------DGEKCT---FSDLL 251
           R    ++ E + L D+   E+TLLGQNV++  W G GL        D +K T   FS LL
Sbjct: 197 REPQSILKEIQDLHDSNFKEVTLLGQNVDSYLWYGGGLKKEFEKATDMQKATAVNFSSLL 256

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
            ++++    +R+R++TS+P+DM+  +I+       +  ++HLPVQSGS+RILK MNR HT
Sbjct: 257 DTVAKKFPKMRIRFSTSNPQDMTLDVIETVAKHKNICNHIHLPVQSGSNRILKEMNRLHT 316

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
             EY  +ID IR + PD AIS D I GFP ET++D +AT+D++ ++ Y   + + YS R 
Sbjct: 317 IEEYITLIDNIRRILPDCAISQDMISGFPTETEEDHQATIDVLKRVQYDFGYMYSYSERP 376

Query: 372 GTPGSNMLE-QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LV 429
           GT  +  LE  V E  K  RL  +    RE         +G+  EVLIE   K+  +  +
Sbjct: 377 GTMAARKLEDDVPEETKKRRLAEIIAVQRENGHIKTREHLGKTEEVLIEGSSKKSDQDWM 436

Query: 430 GRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           GR+     V+    N+ IGD++ V+ITD   +TL GE +
Sbjct: 437 GRNSQNAVVIFAKGNYKIGDLVHVKITDCTSATLLGEAI 475


>gi|88809161|ref|ZP_01124670.1| hypothetical protein WH7805_05696 [Synechococcus sp. WH 7805]
 gi|88787103|gb|EAR18261.1| hypothetical protein WH7805_05696 [Synechococcus sp. WH 7805]
          Length = 497

 Score =  285 bits (730), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 178/460 (38%), Positives = 268/460 (58%), Gaps = 27/460 (5%)

Query: 22  IVPQR----FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA 77
           ++P R    +++ ++GCQMN  DS RM  +  S GY   +   DADL++ NTC IR+ A 
Sbjct: 44  MLPNRERGSYWITTFGCQMNKADSERMAGILESMGYREASGELDADLVLYNTCTIRDNAE 103

Query: 78  EKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLP 137
           +KVYS+LGR    +  R +   +L +VVAGCVAQ EGE +LRR P +++V+GPQ   RL 
Sbjct: 104 QKVYSYLGR----QAQRKRTNPNLTLVVAGCVAQQEGESLLRRVPELDLVMGPQHANRLE 159

Query: 138 ELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197
            LL++   G++VV T+       E ++       R   +  ++ +  GC++ CT+CVVP 
Sbjct: 160 TLLQQVDSGQQVVATEE--HHILEDITTA----RRDSSICGWVNVIYGCNERCTYCVVPS 213

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG------EKCTFSDLL 251
            RG E SR    +  E   L   G  EITLLGQN++A+ G+ L G       + T +DLL
Sbjct: 214 VRGKEQSRLPDAIRLEMEGLAAQGFKEITLLGQNIDAY-GRDLPGITPEGRRQHTLTDLL 272

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
           + +  ++GL R+R+ TSHPR  ++ LI A  DL  L  + H+P QSG + +L++M R +T
Sbjct: 273 HHVHSVEGLERIRFATSHPRYFTERLIDACADLPKLCEHFHIPFQSGDNDVLRAMARGYT 332

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
              YR+IIDRIR   PD ++S+D IV FPGETD  +R T+ L+++IG+ Q  +  YSPR 
Sbjct: 333 VERYRRIIDRIRDRMPDASLSADVIVAFPGETDAQYRRTLALIEEIGFDQVNTAAYSPRP 392

Query: 372 GTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVG 430
            TP +N   Q+ E+ K ERL  +   +       N+   G++ EVL E  + K+  +L+G
Sbjct: 393 NTPAANWDNQLSEDTKVERLREINALVERCARERNERYSGRVEEVLAEGINPKDPSQLMG 452

Query: 431 RSPWLQSVVLNSKNHN-----IGDIIKVRITDVKISTLYG 465
           R+   +     S+N N      GD+++VRI  V+  +L G
Sbjct: 453 RTRTNRLTFFRSENGNGRRFSAGDLVQVRIDAVRSFSLSG 492


>gi|237785694|ref|YP_002906399.1| 2-methylthioadenine synthetase [Corynebacterium kroppenstedtii DSM
           44385]
 gi|237758606|gb|ACR17856.1| 2-methylthioadenine synthetase [Corynebacterium kroppenstedtii DSM
           44385]
          Length = 509

 Score =  285 bits (730), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 149/408 (36%), Positives = 245/408 (60%), Gaps = 22/408 (5%)

Query: 36  MNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRI 95
           MNV+DS R+  +    GY  V S D AD++V NTC +RE A  ++Y  LG+++++K+++ 
Sbjct: 1   MNVHDSERLAGLLEEAGYVPVGSDDPADVVVFNTCAVRENADNRLYGTLGQLKSVKDAK- 59

Query: 96  KEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYS 155
               D+ + V GC+AQ + + +++R+P V+VV G     +LP LL RA       +    
Sbjct: 60  ---PDMQIAVGGCMAQKDKDVVVKRAPWVDVVFGTHNIGKLPTLLARAAHNH---EAQVE 113

Query: 156 VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEAR 215
           + D  E+   V     R    + ++++  GC+  CTFC+VP  RG E  R    ++ E +
Sbjct: 114 IADALEQFPSVLPA-KRDSAYSGWVSVSVGCNNTCTFCIVPSLRGKEKDRRPGDILAEVQ 172

Query: 216 KLIDNGVCEITLLGQNVNAW----RGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPR 271
            L+D+GV E+TLLGQNVNA+        L+ ++  FS LL +  +I+GL R+R+T+ HP 
Sbjct: 173 TLVDDGVSEVTLLGQNVNAYGVHFEDPTLERDRSAFSKLLRACGDIEGLERVRFTSPHPA 232

Query: 272 DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAI 331
           + +  +I A  +   + P LH+P+QSGSD++LK M R +    + +I+D +R   P  +I
Sbjct: 233 EFTSDVIDAMAETHNVCPQLHMPLQSGSDKVLKEMRRSYRTKRFMRILDEVREKLPQASI 292

Query: 332 SSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV---KA 388
           ++D IVGFPGET++DF+ T+DLV+K  +  A++F+YSPR GTP + M +QV + V   + 
Sbjct: 293 TTDIIVGFPGETEEDFQQTLDLVEKARFTSAYTFQYSPRPGTPAAAMEDQVPKAVVQDRY 352

Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIE----KHGKEKGKLVGRS 432
           ERL+ LQ+++  +    N   VG ++EVL++    +   +  +L GR+
Sbjct: 353 ERLVELQERISAE---LNAEMVGDVVEVLVQADDGRRSAQTHRLSGRT 397


>gi|325954192|ref|YP_004237852.1| (dimethylallyl)adenosine tRNA methylthiotransferase miaB [Weeksella
           virosa DSM 16922]
 gi|323436810|gb|ADX67274.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Weeksella
           virosa DSM 16922]
          Length = 482

 Score =  285 bits (730), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 169/462 (36%), Positives = 266/462 (57%), Gaps = 29/462 (6%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F++SYGCQMN  DS  +  +   +GY+  N +++ADLI+LNTC IR+KA + V + L
Sbjct: 27  KKLFLESYGCQMNFSDSEIVASILTEEGYQTTNQVNEADLILLNTCSIRDKAEQTVRNRL 86

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             +  +K    K+   L + V GC+A+    + L    +V++VVGP  Y  LP LL    
Sbjct: 87  NALNAIK----KQNPSLKIGVLGCMAERLKHKFLEEEHLVDIVVGPDAYRDLPNLLTEVE 142

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G+  ++   S E+ +  +S +  G N   GVTAF+TI  GCD  CTFCVVP+TRG E S
Sbjct: 143 DGRDAINVQLSKEETYAEISPIRLGGN---GVTAFVTITRGCDNMCTFCVVPFTRGRERS 199

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNA--WRGKG--------LDGEKCT---FSDLL 251
           R    ++ E ++L + G  E+TLLGQNV++  W G G         + +K T   F+ LL
Sbjct: 200 RDPHSILREIQELHEAGYKEVTLLGQNVDSYLWYGGGPKKDFKNATEIQKATAVDFAQLL 259

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
             ++     +R+R++TS+P+DM D +++       +  Y+HLPVQSGS  +L+ MNR+HT
Sbjct: 260 DMVAMQFPSIRIRFSTSNPQDMKDNVLETMAKHHNICKYIHLPVQSGSTTVLERMNRQHT 319

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
             +Y ++ID+IR + PD A+S D I GF GET+++ + T+ L++ + Y   + F YS R 
Sbjct: 320 REQYFELIDKIRKIIPDCALSHDMIAGFCGETEEEHQDTLSLMEYVKYDFGYMFAYSDRP 379

Query: 372 GTPG-SNMLEQVDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKG 426
           GTP    M + V    K  RL   + LQ++   +++    A VG+  EVLIE +  K++ 
Sbjct: 380 GTPAHKKMADDVPAETKKRRLQEIISLQQQHSAERMK---AYVGKTHEVLIEGNSKKDEN 436

Query: 427 KLVGRSPWLQSVVLNS-KNHNIGDIIKVRITDVKISTLYGEL 467
              GR+     +V    +  ++GD ++V + D   +TL GE+
Sbjct: 437 YWFGRNTQNAVIVFPKIEGTSVGDFVQVYVHDCTTATLLGEM 478


>gi|288800434|ref|ZP_06405892.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella sp. oral taxon
           299 str. F0039]
 gi|288332647|gb|EFC71127.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella sp. oral taxon
           299 str. F0039]
          Length = 441

 Score =  285 bits (730), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 160/452 (35%), Positives = 263/452 (58%), Gaps = 21/452 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F+++YGCQMNV DS  +  +    GYE  ++  +AD I +NTC +RE A  K+Y+ L
Sbjct: 2   KKLFIETYGCQMNVADSEVVASVMQMAGYEMCDNEAEADAIFMNTCSVRENAENKIYNRL 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             +    ++  K+G  L++ V GC+A+   ++++      ++V GP +Y  LP+++ +A 
Sbjct: 62  DTL----HAEQKKGRKLILGVLGCMAERVKDDLINNHH-ADLVAGPDSYLNLPDMIAQAE 116

Query: 145 FGKRVVDTDYSVEDKF-----ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
            G + +D + S  + +     +R+++   G         F++I  GCD FC +C+VPYTR
Sbjct: 117 TGSKAIDIELSKTETYKDIVPQRIALSKIG--------GFVSIMRGCDNFCHYCIVPYTR 168

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG-LDGEKCTFSDLLYSLSEIK 258
           G E SR +  V+ E R L   G  E+TLLGQNVN++  +  + GE  +F DLL  ++   
Sbjct: 169 GRERSRDVESVLAEVRDLCKQGYREVTLLGQNVNSYSFENEVTGEVTSFPDLLRLVAREV 228

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
             +R+R++TSHP+DMSD  ++   +   +  ++HLPVQSGSD++LK MNR++T   Y   
Sbjct: 229 PTMRIRFSTSHPKDMSDDTLRVIAEEPNVCKHIHLPVQSGSDKVLKLMNRKYTVAWYLDR 288

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           +  I+ + PD  IS+D  VG+ GE ++D + +++L+  +GY  +F FKYS R GT  S  
Sbjct: 289 VKAIKEIIPDCGISTDIFVGYHGEEEEDHQMSLELMKTVGYDSSFMFKYSERPGTYASKH 348

Query: 379 L-EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQ 436
           L + + E VK  RL  + +   +     N    G++ EVL+E   K  + +L GR+   +
Sbjct: 349 LPDNISEEVKLRRLNEMIQLQTQLSAISNKKDEGKVFEVLVEGPSKRSREQLCGRTEQNK 408

Query: 437 SVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            VV +  NH+IG+ + V+IT    +TL GE V
Sbjct: 409 MVVFDKGNHHIGERVMVKITSSTSATLLGEAV 440


>gi|282892480|ref|ZP_06300814.1| hypothetical protein pah_c260o033 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281497762|gb|EFB40126.1| hypothetical protein pah_c260o033 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 437

 Score =  285 bits (730), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 165/446 (36%), Positives = 248/446 (55%), Gaps = 14/446 (3%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+ F+V++YGCQMN  DS  M  +  ++G  R    + ADL++ NTC IR+ A  KV   
Sbjct: 4   PKTFYVRTYGCQMNELDSEVMVGILENRGLVRSMEEETADLLIFNTCSIRDLAERKVMGK 63

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LG++   +N       D ++ V GC+A A+ E +  + P ++ V+G    + L  +L+  
Sbjct: 64  LGKLGRNRNH------DTIIGVTGCMANAKKESLFHKVPHIDFVLGTNNIHDLNRVLDDV 117

Query: 144 -RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
              GK+   TD   E + + +     G  R   V+A ++I  GC K+CT+CVVPYTRG E
Sbjct: 118 ISTGKQTSLTDTKFETELDYM-----GAKRDNKVSAHVSIIRGCSKYCTYCVVPYTRGEE 172

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR    +V+E R L+  G  EITLLGQNVN++ GK      C F DLL  L  I GL R
Sbjct: 173 VSRPPEHIVEECRHLVSQGYREITLLGQNVNSY-GKDAPEWGCLFHDLLEKLDAIPGLER 231

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+ TSHP D+S  L+ A  DL  L  ++H P+Q+GS+RILK M+R +T  EY + +  +
Sbjct: 232 IRFMTSHPVDISRELMLAIRDLKSLCEFVHFPIQAGSNRILKKMHRMYTVEEYLEKVAML 291

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R + P +A+ +D IVGFP ETD++F+ T  ++ +  YA AF F YS R GTP     + +
Sbjct: 292 RELVPHVALGTDIIVGFPTETDEEFQETYRILKETEYAVAFIFAYSARKGTPAMRWKDDI 351

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GRSPWLQSVVLN 441
            E VK +RL  L +   +         + + +EVL+E+   +  +L+  R+   ++VV  
Sbjct: 352 PEEVKDQRLKALMQLQEDIYAKQRQNLLDETLEVLVERPSTKDPRLLKARTRCWKNVVFE 411

Query: 442 SKNHNIGDIIKVRITDVKISTLYGEL 467
                IG +  V+I      TL   L
Sbjct: 412 GGEELIGTLQNVKIHSYTNQTLLATL 437


>gi|225351354|ref|ZP_03742377.1| hypothetical protein BIFPSEUDO_02948 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157698|gb|EEG70981.1| hypothetical protein BIFPSEUDO_02948 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 484

 Score =  285 bits (730), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 160/400 (40%), Positives = 245/400 (61%), Gaps = 23/400 (5%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGY----ERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           F+V + GCQMNV+DS R+  +  + GY    E      D DLIV+NTC +RE AAE++Y 
Sbjct: 31  FYVHTLGCQMNVHDSERIAGVLEADGYVPATEEQYLDHDVDLIVMNTCAVRENAAERMYG 90

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +G    LK  R     +L + V GC+AQ + E+I +++P V+ V G +    LP+LL++
Sbjct: 91  TIGLWAELKRQR----PNLQIAVGGCMAQLDREKIAKKAPWVDAVFGTKNIGSLPQLLDQ 146

Query: 143 ARF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           AR  G   V     +     +L       +R   V++++ I  GC+  CTFC+VP TRG 
Sbjct: 147 ARIEGHAQVKVKEELNYFPSQLPT-----DRASKVSSWVAISVGCNNTCTFCIVPTTRGK 201

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E  R    ++ E R+ +D G  E+TLLGQNVN++ G G+ G++  FS LL +  EI+GL 
Sbjct: 202 EHDRRPGDILAEIRQCVDEGAKEVTLLGQNVNSF-GYGI-GDRFAFSKLLRACGEIEGLE 259

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+T+ HP   +D +I A  +   +M  LH P+QSGSDRIL++M R + + ++  I+ +
Sbjct: 260 RVRFTSPHPAAFTDDVIAAMAETPNVMHQLHFPLQSGSDRILRAMRRSYRSAKFLDILRK 319

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           IR   PD  IS+D IVGFPGET++DF+ T+ +V++  +A AF+F YSPR GTP + M EQ
Sbjct: 320 IREAMPDAQISTDIIVGFPGETEEDFQKTLRVVEEARFASAFTFIYSPRPGTPAAEM-EQ 378

Query: 382 VDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLI 418
           V  +V   + ERL+ LQ+++ E+ +   +   G+ +EV++
Sbjct: 379 VPHDVVQDRFERLVALQERITEENLKTFE---GRDVEVMV 415


>gi|268317612|ref|YP_003291331.1| RNA modification enzyme, MiaB family [Rhodothermus marinus DSM
           4252]
 gi|262335146|gb|ACY48943.1| RNA modification enzyme, MiaB family [Rhodothermus marinus DSM
           4252]
          Length = 482

 Score =  285 bits (729), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 167/448 (37%), Positives = 262/448 (58%), Gaps = 16/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ ++++YGCQMNV DS  +  +  + GY      + AD+++LNTC IRE A +KV   L
Sbjct: 27  RKVYIETYGCQMNVSDSEIVAAILRAHGYGLTRDPEQADVVLLNTCAIRENAEQKVRHRL 86

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
              R  K    K+   L + V GC+A+    ++L    +V++VVGP  Y  LP LLE A 
Sbjct: 87  DIFRAHKR---KQRPGLRIGVLGCMAERLRHKLLEEEQLVDLVVGPDAYRDLPRLLEEAE 143

Query: 145 F-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             G+  V+   S E+ +  ++ V    N   GVTA+++I  GCD  C FCVVP+TRG E 
Sbjct: 144 TTGQAAVNVQLSREETYADIAPVRYDSN---GVTAYVSIMRGCDNMCAFCVVPFTRGRER 200

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR +  ++DE  +L++ G  E+T+LGQNVN++R    +G   TF +LLY +S I   +R+
Sbjct: 201 SRPVQSILDECARLVEEGYREVTVLGQNVNSYRYTE-NGTVVTFPELLYRVSLISPELRV 259

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           RY+TSHP+D SD L+  H +   +  Y+HLPVQ G+  +L+ M R +T  +Y  +++R R
Sbjct: 260 RYSTSHPKDCSDELLHVHRERHNVCNYIHLPVQHGNTDVLRRMRRTYTREQYLALVERAR 319

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML-EQV 382
            + P I++S+D I GF GET+++ R T+ L++++ +  A+ F YS R GT  +    + V
Sbjct: 320 RIVPGISLSTDIIAGFCGETEEEHRDTLSLLEEVRFDHAYMFMYSERPGTYAARKYKDDV 379

Query: 383 DENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLVGRSPWLQSV 438
              VK  RL   + LQ ++    +  N   +G++  VL+E   K    +L GR+   + V
Sbjct: 380 PLEVKKRRLQEIIELQTRI---SLENNRKEIGRVHTVLVEGPSKRSPEQLCGRTDTNKMV 436

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGE 466
           V +  +   GD ++VRITD   +TL+GE
Sbjct: 437 VFDRHDFRPGDYVRVRITDCTSATLFGE 464


>gi|254525438|ref|ZP_05137490.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Prochlorococcus marinus
           str. MIT 9202]
 gi|221536862|gb|EEE39315.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Prochlorococcus marinus
           str. MIT 9202]
          Length = 464

 Score =  285 bits (729), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 170/455 (37%), Positives = 265/455 (58%), Gaps = 23/455 (5%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           +++ ++GCQMN  DS RM       GY + +    ADL++ NTC IR+ A +KVYSFLGR
Sbjct: 21  YWITTFGCQMNKADSERMAGTLEKMGYTKADDELKADLVLYNTCTIRDNAEQKVYSFLGR 80

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
               +  R  +   L +VVAGC+AQ EGE +LRR P +++V+GPQ    L  LL +   G
Sbjct: 81  ----QAKRKHKIPSLKLVVAGCLAQQEGESLLRRVPELDLVMGPQHVNNLENLLGKVDSG 136

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
            +V  T    E+ F    I +    R+  +  ++ I  GC++ C++CVVP  RG E SR 
Sbjct: 137 NQVAAT----EETFISEDITNA--RRESSICGWVNIIYGCNERCSYCVVPSVRGKEQSRY 190

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG------EKCTFSDLLYSLSEIKGL 260
            + +  E +KL ++   EITLLGQN++A+ G+ L G      ++ T +DLLY + +++G+
Sbjct: 191 PNAIKSEIQKLANDNFKEITLLGQNIDAY-GRDLPGTTKEGRKENTLTDLLYYIHDVEGI 249

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+ TSHPR  S  LI+A  +LD +  + H+P QSG++ ILK M R +T  +Y++II+
Sbjct: 250 RRIRFATSHPRYFSKRLIQACYELDKVCEHFHIPFQSGNNEILKLMARGYTIDKYKRIIE 309

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
            IRS+ P+ +I++D IV FPGE+++ +R T+ L+  IG+ Q  +  YSPR  TP +    
Sbjct: 310 NIRSLMPNASITADAIVAFPGESEEQYRDTLKLISDIGFDQVMTAAYSPRPNTPAALWHN 369

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSP----WL 435
           Q+ E VK ERL  + + +       N   +  I  VLIE  + K   +++GR+       
Sbjct: 370 QISEEVKKERLKEINELVETTSKQRNARYLDSIESVLIEGFNPKNSSQIMGRTRTNRLTF 429

Query: 436 QSVVLNSK-NHNIGDIIKVRITDVKISTLYGELVV 469
             +  N K N ++GD I V+I + +  +L G L +
Sbjct: 430 VEIPKNIKFNFSLGDEIDVKINEARPFSLTGILCL 464


>gi|110598152|ref|ZP_01386430.1| tRNA-i(6)A37 modification enzyme MiaB [Chlorobium ferrooxidans DSM
           13031]
 gi|110340284|gb|EAT58781.1| tRNA-i(6)A37 modification enzyme MiaB [Chlorobium ferrooxidans DSM
           13031]
          Length = 428

 Score =  285 bits (729), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 164/436 (37%), Positives = 253/436 (58%), Gaps = 22/436 (5%)

Query: 36  MNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRI 95
           MN  DS  M  +    GY    S  +A +I+LNTC +RE A E++  +L  +  +K    
Sbjct: 1   MNQADSAIMAALLVEDGYVPAESEGEAGIILLNTCAVRENAVERIEHYLQHLLGMK---- 56

Query: 96  KEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYS 155
           ++  DL++ VAGC+ Q + EE+   SP ++ + GP TY  LP L+ +AR GKR    +++
Sbjct: 57  RKQKDLILGVAGCIPQYQREEMFSMSPAIDFLAGPDTYRSLPLLISQARSGKRAASLEFN 116

Query: 156 VEDKFERLSIVDGGYNRKRG-VTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEA 214
             + +       G   R++G +TAF+ +  GC+  C +CVVP+TRG E S ++S V+DE 
Sbjct: 117 PAETYA------GIDPRRQGLITAFVPVMRGCNNMCAYCVVPFTRGRERSHTMSSVLDEV 170

Query: 215 RKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMS 274
           RK+  +G  EITLLGQNVN++     D +   F+ LL ++S     +R+R+TTSHP+D+S
Sbjct: 171 RKVAASGYREITLLGQNVNSYSAPDRDMD---FAGLLEAVSRQAPELRIRFTTSHPKDIS 227

Query: 275 DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSD 334
           + L++       +  ++HLPVQSGS R+L  MNR HT  +YR+ I  IRSV PD+++S+D
Sbjct: 228 ESLVRTIARRPNICNHIHLPVQSGSSRVLGLMNRGHTIEQYREKIALIRSVIPDVSLSTD 287

Query: 335 FIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE-QVDENVKAERL-- 391
            I GF GE + D + T+ L+  I +  A+ F YS R GT  +  LE  V E VK  RL  
Sbjct: 288 LIAGFCGEDEADHQLTLKLLSDIRFDAAYMFFYSTRPGTLAARTLEDDVPEAVKKRRLQE 347

Query: 392 -LCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLNSKNHNIGD 449
            + LQ  +  Q +      +G ++EVL E    +   +L+GR+   ++VV + K +  GD
Sbjct: 348 IIDLQNDISGQLL---QQSIGSVVEVLAESESRRSAAQLMGRTDTNRAVVFDRKGYQPGD 404

Query: 450 IIKVRITDVKISTLYG 465
           ++ V IT    +T+ G
Sbjct: 405 LVSVLITSATSATMTG 420


>gi|171742622|ref|ZP_02918429.1| hypothetical protein BIFDEN_01735 [Bifidobacterium dentium ATCC
           27678]
 gi|283456298|ref|YP_003360862.1| tRNA 2-methylthioadenosine synthase [Bifidobacterium dentium Bd1]
 gi|171278236|gb|EDT45897.1| hypothetical protein BIFDEN_01735 [Bifidobacterium dentium ATCC
           27678]
 gi|283102932|gb|ADB10038.1| tRNA 2-methylthioadenosine synthase [Bifidobacterium dentium Bd1]
          Length = 503

 Score =  285 bits (729), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 161/400 (40%), Positives = 245/400 (61%), Gaps = 23/400 (5%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNS---MD-DADLIVLNTCHIREKAAEKVYS 82
           F+V + GCQMNV+DS R+  +  + GY        MD D DLIV+NTC +RE AAE++Y 
Sbjct: 50  FYVHTLGCQMNVHDSERIAGVLENAGYVPATEEQYMDHDVDLIVMNTCAVRENAAERMYG 109

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +G    +K  R     +L + V GC+AQ + E I  ++P V+ V G +    LP+LL++
Sbjct: 110 TIGLWAEMKRER----PNLQIAVGGCMAQLDRERIAEKAPWVDAVFGTKNIGSLPQLLDQ 165

Query: 143 ARF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           AR  G   V  +  +     +L       +R   V++++ I  GC+  CTFC+VP TRG 
Sbjct: 166 ARVQGHAQVKVEEELNYFPSQLPT-----DRDSRVSSWVAISVGCNNTCTFCIVPTTRGK 220

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E  R    ++ E R+ +D G  EITLLGQNVN++ G G+ G++  FS LL +  EI+GL 
Sbjct: 221 EHDRRPGDILAEIRQCVDEGAKEITLLGQNVNSF-GYGI-GDRFAFSKLLRACGEIEGLE 278

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+T+ HP   +D +I A  +   +M  LH P+QSGSDRIL++M R + + ++  I+ +
Sbjct: 279 RVRFTSPHPAAFTDDVIAAMAETPNVMHQLHFPLQSGSDRILRAMRRSYRSAKFLDILRK 338

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           IR   PD  IS+D IVGFPGET++DF+ TM +V++  ++ AF+F YSPR GTP + M EQ
Sbjct: 339 IREAMPDAQISTDIIVGFPGETEEDFQETMRVVEEARFSSAFTFIYSPRPGTPAAEM-EQ 397

Query: 382 VDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLI 418
           V  +V   + ERL+ LQ+++ E+ +   +   G+ +EV++
Sbjct: 398 VPHDVVQNRFERLVALQERITEENLKIFE---GRDVEVMV 434


>gi|240144034|ref|ZP_04742635.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Roseburia intestinalis
           L1-82]
 gi|257203960|gb|EEV02245.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Roseburia intestinalis
           L1-82]
          Length = 496

 Score =  285 bits (728), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 175/471 (37%), Positives = 263/471 (55%), Gaps = 34/471 (7%)

Query: 16  QIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREK 75
           Q+ ++   P  F V ++GCQMN  DS ++  +    GY   +S ++AD ++ NTC +RE 
Sbjct: 42  QLSEEKGSPLTFHVSTFGCQMNARDSEKLVGILEKIGYVEEDS-EEADFVIYNTCTVREN 100

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTY 133
           A  KVY  LG +   +    K+   +++ + GC+ Q     E+I +    VN++ G    
Sbjct: 101 ANNKVYGRLGYLNGFQ----KKNPFMMIGLCGCMMQEPTVVEKIKQSYRFVNLIFGTHNI 156

Query: 134 YRLPELL----------ERARFGKRVV-----DTDYSVEDKFERLSIVDGGYNRKRGVTA 178
           Y+  EL+            A  G  +      DTD  VED       V+  Y+ K GV  
Sbjct: 157 YKFAELIVTALENSYSEHAAGHGTSMTIDIWKDTDKIVED-----LPVERKYSFKSGVN- 210

Query: 179 FLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK 238
              I  GC+ FC++C+VPY RG E SR   +++ E  +L  +GV EI LLGQNVN++ GK
Sbjct: 211 ---IMFGCNNFCSYCIVPYVRGRERSREPKEIIREVERLAADGVVEIMLLGQNVNSY-GK 266

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
            L+ +  TF+ LL  + ++ G+ R+R+ TSHP+D+SD LI+   +   +  +LHLP+QSG
Sbjct: 267 NLE-QPMTFAQLLQEIEKVDGIERIRFMTSHPKDLSDDLIEVMKNSKKICKHLHLPLQSG 325

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           S RILK MNRR+    Y +++D+IR+  PDIA+++D IVGFPGET++DF  TMD+V K+ 
Sbjct: 326 SSRILKLMNRRYDKEHYLELVDKIRAAVPDIALTTDIIVGFPGETEEDFEETMDVVRKVR 385

Query: 359 YAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI 418
           Y  AF+F YS R GTP + M +Q+ E+V   R   L K+++        A  GQ + VLI
Sbjct: 386 YDSAFTFIYSKRTGTPAAVMEDQIPEDVIKARFDRLLKEVQTISAEKAGALTGQTLPVLI 445

Query: 419 EKHGKEKGKLV-GRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           E+  ++   LV GR      V L      IG I+ V++ + K     GE +
Sbjct: 446 EEKNEQDASLVTGRLSNNSVVHLPGTEDMIGKIVDVKLLECKGFYYMGESI 496


>gi|315606981|ref|ZP_07881987.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella buccae ATCC
           33574]
 gi|315251362|gb|EFU31345.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella buccae ATCC
           33574]
          Length = 444

 Score =  285 bits (728), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 165/451 (36%), Positives = 265/451 (58%), Gaps = 17/451 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F+++YGCQMNV DS  +  +    GYE     ++AD I LNTC +RE A  K+Y   
Sbjct: 3   KKLFIETYGCQMNVADSEVVASVMKMAGYELCEKEEEADAIFLNTCSVRENAENKIYH-- 60

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R+  L   R K+G +L++ V GC+A+   ++++      ++V GP +Y  LP+++ +  
Sbjct: 61  -RLDTLHAER-KKGRELILGVLGCMAERVKDDLIDNHH-ASLVCGPDSYLNLPDMVAQCE 117

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G + +D + S  + +  +     G N    V+ F++I  GC+ FC +C+VP+TRG E S
Sbjct: 118 MGNKAIDIELSKTETYRDVIPQRIGGNH---VSGFVSIMRGCNNFCHYCIVPFTRGRERS 174

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAW----RGK-GLDGEKCTFSDLLYSLSEIKG 259
           R +  ++ E   L D G  E+TLLGQNVN++     GK   DG   +F+ LL  ++E   
Sbjct: 175 RDVESILKEVCDLRDRGFKEVTLLGQNVNSYGLLPNGKRPADG--TSFAQLLRKVAETVS 232

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
            +R+R+TTS+P DM+D +++A  D+  L  ++H P QSGSD++L+ MNR++T  +Y   +
Sbjct: 233 EMRVRFTTSNPEDMTDDIVQAVADMPNLCNHIHFPAQSGSDKVLRLMNRKYTRQQYLDKV 292

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
             I+ + PD  I++D  VG+  E+++D++ T+ LV ++GY  AF FKYS R GT  +  L
Sbjct: 293 ATIKRLIPDCGITTDIFVGYHDESEEDYQQTLSLVREVGYDSAFMFKYSERPGTYAAEHL 352

Query: 380 -EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQS 437
            + V E  K  RL  L K   E     N    G+   +LIE   K  + +L+GR+   ++
Sbjct: 353 PDNVPEEEKVRRLNELIKLQTEISALQNKKDEGKEFVILIENFSKRSRQQLMGRTEQNKA 412

Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           VV++  NH+IG+ +KVRIT    +TL+GE V
Sbjct: 413 VVIDKGNHHIGEFVKVRITGSTSATLFGEEV 443


>gi|119718067|ref|YP_925032.1| RNA modification protein [Nocardioides sp. JS614]
 gi|229890578|sp|A1SNG0|MIAB_NOCSJ RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|119538728|gb|ABL83345.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Nocardioides sp. JS614]
          Length = 496

 Score =  285 bits (728), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 158/424 (37%), Positives = 247/424 (58%), Gaps = 26/424 (6%)

Query: 20  QCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEK 79
           Q   P+ + V++YGCQMNV+DS R+  +    GY        AD++V NTC +RE A  K
Sbjct: 5   QHTSPRTYEVRTYGCQMNVHDSERLTGLLEDAGYVAAPDGQQADVVVFNTCAVRENADNK 64

Query: 80  VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL 139
           +Y  LG +  +K +       + + V GC+AQ + + I  R+P V+VV G      LP L
Sbjct: 65  LYGNLGHLAPVKAATPG----MQIAVGGCLAQKDRDTITTRAPWVDVVFGTHNIGSLPAL 120

Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKR--GVTAFLTIQEGCDKFCTFCVVPY 197
           LERAR        D +  +  E L +       +R     A++++  GC+  CTFC+VP 
Sbjct: 121 LERARV------QDEAQVEILESLEVFPSTLPTRRESAYAAWVSVSVGCNNTCTFCIVPS 174

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSE 256
            RG E  R   +++ E   L+ +GV EITLLGQNVNA+   G++ G++  FS LL +  E
Sbjct: 175 LRGKEKDRRPGEILAEVEALVADGVSEITLLGQNVNAY---GVEFGDRQAFSKLLRACGE 231

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           + GL R+R+T+ HP + +D +I A  +   +MP LH+P+QSGSD++L+ M R +   ++ 
Sbjct: 232 VDGLERVRFTSPHPAEFTDDVIAAMAETPNVMPQLHMPLQSGSDKVLRDMRRSYRQRKFL 291

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
            I++R+R+  PD AI++D IVGFPGET++DF  TM +V    ++ AF+F+YS R GTP +
Sbjct: 292 GILERVRAAMPDAAITTDIIVGFPGETEEDFLQTMHVVRAARFSGAFTFQYSKRPGTPAA 351

Query: 377 NMLEQVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKG---KLV 429
            + +QV   V   + ERL+ L  ++  ++   N   VG+ +E+++ E  G++     +L 
Sbjct: 352 TLPDQVPPEVVKDRYERLVALVNEIAWEE---NKRLVGRRVELMVAEGEGRKDAATHRLS 408

Query: 430 GRSP 433
           GR P
Sbjct: 409 GRGP 412


>gi|309775695|ref|ZP_07670693.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Erysipelotrichaceae
           bacterium 3_1_53]
 gi|308916534|gb|EFP62276.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Erysipelotrichaceae
           bacterium 3_1_53]
          Length = 478

 Score =  285 bits (728), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 172/448 (38%), Positives = 258/448 (57%), Gaps = 16/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +++++++YGCQ N  DS  +  +     +  V    DADLI++NTC IR+ A +KV   +
Sbjct: 43  KKYYLRTYGCQANERDSETLAGILEEMNFTAVEHPQDADLILMNTCAIRKNAEDKVLGEI 102

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELL-E 141
           G ++ LK ++     DLL  + GC+AQ E     +L +   VN++ G    +RLPELL +
Sbjct: 103 GSLKRLKRNK----PDLLFGLCGCMAQEEDVVATLLEKYRHVNLIFGTHNIHRLPELLYD 158

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
               GKR V+      D  E L +   G ++     A++ I  GCDKFCT+C+VPYTRG 
Sbjct: 159 VMVHGKRSVEVLSKEGDVIENLPVRRFGRHK-----AWVNIMYGCDKFCTYCIVPYTRGK 213

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR +  +++E R L  +G  EITLLGQNVN++ GK L  E   F+ LL   ++  G+ 
Sbjct: 214 ERSRLMEDILEEVRVLKQDGFKEITLLGQNVNSY-GKDLHMEG-GFAKLLEETAKT-GIE 270

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHP D SD +I      D +MP++HLPVQSG   ILK M RR+T  +Y  +  +
Sbjct: 271 RIRFTTSHPWDFSDEMIDVIARYDNIMPFIHLPVQSGDSDILKIMGRRYTREQYLTLFHK 330

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I+      AIS+D IVGFP ET++ F+ T+ LVD+  +  AF+F YSPR GTP + M + 
Sbjct: 331 IKERVAGCAISTDIIVGFPNETEEQFQNTLSLVDECQFDNAFTFIYSPREGTPAAAMEDN 390

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GRSPWLQSVVL 440
           +   VK  RL  L ++        N+A +G I++VL++   K+  ++  G +   + V  
Sbjct: 391 IPLAVKQRRLQELNERWNLYAHEKNEAYLGSIVKVLVDGASKKNKEVYSGYTETNKLVNF 450

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
              +   GDI+ V+IT  K  +L GE +
Sbjct: 451 QRTDAKPGDIVSVKITACKTFSLDGEQI 478


>gi|123966699|ref|YP_001011780.1| 2-methylthioadenine synthetase [Prochlorococcus marinus str. MIT
           9515]
 gi|229890602|sp|A2BY12|MIAB_PROM5 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|123201065|gb|ABM72673.1| 2-methylthioadenine synthetase [Prochlorococcus marinus str. MIT
           9515]
          Length = 464

 Score =  285 bits (728), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 171/453 (37%), Positives = 261/453 (57%), Gaps = 23/453 (5%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           +++ ++GCQMN  DS RM       GY R      ADL++ NTC IR+ A +KVYSFLGR
Sbjct: 21  YWITTFGCQMNKADSERMAGTLEKMGYSRAIDELKADLVLYNTCTIRDSAQQKVYSFLGR 80

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
               K+S  K    L +VVAGC+AQ EGE +LRR P +++++GPQ    L  LLER   G
Sbjct: 81  QIKRKHSLPK----LKLVVAGCLAQQEGESLLRRVPELDLIMGPQHVNNLENLLERVDSG 136

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
            +VV T    E+ F    I +    R   +  ++ I  GC++ C++CVVP  RG E SR 
Sbjct: 137 NQVVAT----EETFISEDITNA--RRDSTICGWVNIIYGCNERCSYCVVPSVRGKEQSRY 190

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL-----DGEK-CTFSDLLYSLSEIKGL 260
              +  E + L  N   EITLLGQN++A+ G+ L     +G K  T +DLLY + ++ G+
Sbjct: 191 PKAIKSEIQTLAQNNYKEITLLGQNIDAY-GRDLPVTTKEGRKENTLTDLLYFIHDVDGI 249

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R++TSHP+  S  LIKA  +LD +  + H+P QSG+D IL+ M R +T  +Y++II+
Sbjct: 250 RRIRFSTSHPKYFSKRLIKACYELDKVCEHFHIPFQSGNDEILRLMARGYTIDKYKKIIE 309

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
            IRS+ P+ +I++D IV FPGET+  ++ T+ L+  +G+ Q  +  YSPR  TP +    
Sbjct: 310 NIRSLMPNASITADAIVAFPGETEKQYQDTLRLISDVGFDQVMTAAYSPRPNTPAAIWNN 369

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSVV 439
           Q+ E VK ERL  + + +       N   +     VLIE  + K   +++GR+   +   
Sbjct: 370 QIAEEVKKERLKEINELVEATSRKRNQRYLNNTESVLIEGLNPKNSMQMMGRTRTNRLTF 429

Query: 440 LNSK-----NHNIGDIIKVRITDVKISTLYGEL 467
           +        N++ GD + V+IT+ +  +L G++
Sbjct: 430 VEIPENIEFNYSFGDELNVKITEARSFSLSGQI 462


>gi|313901801|ref|ZP_07835224.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Thermaerobacter
           subterraneus DSM 13965]
 gi|313467921|gb|EFR63412.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Thermaerobacter
           subterraneus DSM 13965]
          Length = 518

 Score =  285 bits (728), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 185/446 (41%), Positives = 258/446 (57%), Gaps = 16/446 (3%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           + + ++GCQMN  DS  +       G      +DDADLI+LNTC +RE A EKV+  +G 
Sbjct: 59  YKILTWGCQMNERDSEILAGQLEEMGMVPAGLLDDADLILLNTCAVRETAEEKVFGTIGY 118

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           ++ LK    ++  DL++ + GC+AQ E     I R  P V++V G    ++LP+L+ER R
Sbjct: 119 LKVLK----QKNPDLILGLCGCMAQEEATIRRIQRYYPHVDLVFGTHNVHQLPQLIERVR 174

Query: 145 FGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             +  VVD   + E   E L     G     GV A++ I  GCDKFCTFC+VP TRG E 
Sbjct: 175 REEGMVVDVWQAAEGVVEHLPSRRAG-----GVKAWVNIIYGCDKFCTFCIVPTTRGRER 229

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR    V+ E   L   G  E+TLLGQNVN++ GK L G    F+DLL  L ++ G+  +
Sbjct: 230 SRRPEDVIAEVEYLAAEGYKEVTLLGQNVNSY-GKDL-GIGYDFADLLARLDQVPGIRWI 287

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           RYTTSHPRD SD LI+   + D +  + HLPVQSGS+++L+ MNRR+T   Y ++I++IR
Sbjct: 288 RYTTSHPRDFSDKLIRTIAESDKVTEHFHLPVQSGSNQVLRWMNRRYTREHYLRLIEKIR 347

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              PD  I++D IVGFP ET++DFR T+DLV ++ Y  AF+F YSPR GTP +    Q+ 
Sbjct: 348 EAVPDACITTDIIVGFPKETEEDFRQTLDLVRQVEYDNAFTFIYSPREGTPAARW-PQLP 406

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
             VK ERL  L +   E  +  N   VGQ   VLI+   K+  +++        +VL S 
Sbjct: 407 REVKQERLERLMEVQYEINLRKNKRLVGQRAVVLIDGPSKKNPQVLSARTRTNKLVLVSG 466

Query: 444 NHN-IGDIIKVRITDVKISTLYGELV 468
           +    G   +V IT  +  TL G L+
Sbjct: 467 DAAWAGRFARVEITRAQTFTLEGRLL 492


>gi|290956967|ref|YP_003488149.1| radical SAM protein [Streptomyces scabiei 87.22]
 gi|260646493|emb|CBG69590.1| putative Radical SAM protein [Streptomyces scabiei 87.22]
          Length = 483

 Score =  285 bits (728), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 169/448 (37%), Positives = 257/448 (57%), Gaps = 29/448 (6%)

Query: 36  MNVYDSLRMEDMFFSQGYERVN---SMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92
           MNV+DS R+  +    GY R        +AD++V NTC +RE A  ++Y  LGR+  +K 
Sbjct: 1   MNVHDSERLSGLLEDAGYVRAPEDAGEGNADVVVFNTCAVRENADNRLYGNLGRLAPMKT 60

Query: 93  SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV-VD 151
           +R      + + V GC+AQ + + I++++P V+VV G     +LP LLERAR      V+
Sbjct: 61  ARP----GMQIAVGGCLAQKDRDTIVKKAPWVDVVFGTHNIGKLPVLLERARVQDEAQVE 116

Query: 152 TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVV 211
              S+E     L        R+    A+++I  GC+  CTFC+VP  RG E  R    ++
Sbjct: 117 IAESLEAFPSTLPT-----RRESAYAAWVSISVGCNNTCTFCIVPALRGKEKDRRTGDIL 171

Query: 212 DEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270
            E   L+  GV EITLLGQNVNA+   G D G++  FS LL +  +I+GL R+R+T+ HP
Sbjct: 172 AEIEALVAEGVSEITLLGQNVNAY---GSDIGDREAFSKLLRACGKIEGLERVRFTSPHP 228

Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330
           RD +D +I A  +   +MP LH+P+QSGSD +LK+M R +    Y  II+++R+  P  A
Sbjct: 229 RDFTDDVIAAMAETPNVMPQLHMPLQSGSDTVLKAMRRSYRQERYLGIIEKVRASIPHAA 288

Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV---K 387
           I++D IVGFPGET++DF  TM +V +  + QAF+F+YS R GTP + M  Q+ + V   +
Sbjct: 289 ITTDIIVGFPGETEEDFEQTMHVVREARFTQAFTFQYSKRPGTPAATMENQIPKQVVQAR 348

Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKG---KLVGRSPWLQSVVLNSK 443
            ERL+ LQ+++   +   N   VG+ +E+++ E  G++ G   +L GR+   + V     
Sbjct: 349 YERLVALQEEISWDE---NKKQVGRTLELMVAEGEGRKDGATHRLSGRAADNRLVHFTKP 405

Query: 444 NHNI--GDIIKVRITDVKISTLYGELVV 469
           +  +  GD++ V IT      L  E  V
Sbjct: 406 DQEVRPGDVVTVEITYAAPHHLLAEGAV 433


>gi|189460206|ref|ZP_03008991.1| hypothetical protein BACCOP_00843 [Bacteroides coprocola DSM 17136]
 gi|189433067|gb|EDV02052.1| hypothetical protein BACCOP_00843 [Bacteroides coprocola DSM 17136]
          Length = 457

 Score =  284 bits (727), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 166/448 (37%), Positives = 262/448 (58%), Gaps = 21/448 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F+++YGCQMNV DS  +  +    GY    S+D+AD + +NTC IR+ A +K+ + L
Sbjct: 19  KKLFIETYGCQMNVADSEVIASIMQMAGYSPCESLDEADAVFMNTCSIRDNAEQKILNRL 78

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
               +L+  R      L+V V GC+A+    +++     V++V GP  Y  LP+L+    
Sbjct: 79  EFFHSLRKKR----KHLIVGVLGCMAERVKNDLIENHH-VDLVAGPDAYLTLPDLIGAVE 133

Query: 145 FGKRVVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            G++ ++ + S  + +  +  S + G +     ++ F++I  GC+ FC +C+VPYTRG E
Sbjct: 134 AGEKAINVELSTTETYRDVIPSRICGNH-----ISGFVSIMRGCNNFCHYCIVPYTRGRE 188

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR +  +++E   L   G  E+TLLGQNVN++R +  +GE  TF  LL  ++E    +R
Sbjct: 189 RSRDVESILNEVHDLQQKGYKEVTLLGQNVNSYRFER-EGEVVTFPMLLRIVAEAVPEMR 247

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP+DMSD  +    ++  +  ++HLPVQSGS RILK MNR++T   Y + ++ I
Sbjct: 248 VRFTTSHPKDMSDETLYVIAEVPNVCKHIHLPVQSGSSRILKLMNRKYTREWYLERVEAI 307

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML-EQ 381
           R + PD  +S+D   GF  ET++D + ++ L+ +  Y  AF FKYS R GT  S  L + 
Sbjct: 308 RRIIPDCGLSTDIFSGFHSETEEDHQMSLSLMRECAYDSAFMFKYSERPGTYASKHLPDD 367

Query: 382 VDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQS 437
           V E VK  RL   + LQ +L  +  + N   VG+  EVL+E   K  K +L GR+   + 
Sbjct: 368 VPEEVKIRRLNEMIELQNQLSAESNARN---VGKTFEVLVEGISKRSKEQLFGRTEQNKV 424

Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYG 465
           VV +   H IGD+++VRIT+   +TL G
Sbjct: 425 VVFDRGTHRIGDLVRVRITESSSATLKG 452


>gi|300775426|ref|ZP_07085288.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Chryseobacterium gleum
           ATCC 35910]
 gi|300506166|gb|EFK37302.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Chryseobacterium gleum
           ATCC 35910]
          Length = 478

 Score =  284 bits (727), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 174/460 (37%), Positives = 265/460 (57%), Gaps = 29/460 (6%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F++SYGCQMN  DS  +  +   QGY     +++ADLI+LNTC IREKA + V   L
Sbjct: 25  KKLFLESYGCQMNFSDSEIVASILNEQGYNTTMKVEEADLILLNTCSIREKAEQTVRMRL 84

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            + +NLK    KE  ++ V V GC+A+    + L    +V++VVGP  Y  LP LL+   
Sbjct: 85  SQFKNLK----KERPNMTVGVLGCMAERLKTKFLEEEQLVDLVVGPDAYRDLPNLLKETD 140

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G+  ++   S E+ +  ++ V  G N   GVTAF+TI  GCD  CTFCVVP+TRG E S
Sbjct: 141 DGRDAINVILSKEETYADINPVRLGGN---GVTAFVTITRGCDNMCTFCVVPFTRGRERS 197

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNA--WRG--------KGLDGEKCT---FSDLL 251
           R    +++E + L +NG  EITLLGQNV++  W G        K  + +K T   F+ LL
Sbjct: 198 RDPHSIIEECKDLANNGYKEITLLGQNVDSYLWYGGGPKKDFAKASEMQKATAVNFAQLL 257

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
             +++    +R+R++TS+P+DMS  + +     D +  Y+HLPVQSGS+ +L +MNR+HT
Sbjct: 258 DLVAKAVPELRIRFSTSNPQDMSLDVFRMMAKHDNICKYVHLPVQSGSNNMLAAMNRQHT 317

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
             EY  +I + + + P++A S D IVGF  ET++D + T+ L+ ++ Y   + F YS R 
Sbjct: 318 REEYLDLIRKAKEIVPEVAFSQDMIVGFCNETEEDHQDTLSLMREVEYDYGYMFAYSERP 377

Query: 372 GTPGSNMLE-QVDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKG 426
           GTP    +E  +  +VK  RL   + LQ +L ++++    + VG+  ++LIE    K K 
Sbjct: 378 GTPAHKKMEDNIPADVKQRRLAEVIALQGELSKKRMK---SYVGREHQILIEGISKKNKN 434

Query: 427 KLVGRSPWLQSVVLNS-KNHNIGDIIKVRITDVKISTLYG 465
           +  GR+      V +  +   IGDI+ V + D    TL G
Sbjct: 435 QWKGRNSQNAVCVFDKLEGQKIGDIVNVFVYDNTQGTLLG 474


>gi|281411880|ref|YP_003345959.1| RNA modification enzyme, MiaB family [Thermotoga naphthophila
           RKU-10]
 gi|281372983|gb|ADA66545.1| RNA modification enzyme, MiaB family [Thermotoga naphthophila
           RKU-10]
          Length = 443

 Score =  284 bits (727), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 171/448 (38%), Positives = 264/448 (58%), Gaps = 24/448 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           RF++K++GCQMN  DS  M  +   +G+   ++ ++AD++++NTC +R K+ EK YS LG
Sbjct: 2   RFYIKTFGCQMNENDSETMAGLLMKEGFTPASAPEEADVVIINTCAVRRKSEEKAYSELG 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           ++  +K  R      L+V VAGCVA+ E E++L R    + V+G +   ++ E ++RA  
Sbjct: 62  QMLKIKRKR-----KLVVGVAGCVAEKEREKLLERG--ADFVLGTRAVLKVTEAVKRALQ 114

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G++V   +  +++    LS +     R     A++TI  GCD+FCT+C+VPYTRG E SR
Sbjct: 115 GEKVALFEDHLDEYTHDLSRI-----RSSKHHAWVTIIFGCDRFCTYCIVPYTRGREKSR 169

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL-DGEKCTFSDLLYSLSEIKGLVRLR 264
            +  +++E R+L   G  E+T LGQNV+A+ GK L DG   + + LL   S+I+G+ R+ 
Sbjct: 170 PMEDILEEVRELAKQGYREVTFLGQNVDAY-GKDLKDG--SSLAKLLEEASKIEGIERIW 226

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           + TS+P D SD LI+       +   +HLPVQSGS+RILK MNR +T  EY  +++RIRS
Sbjct: 227 FLTSYPTDFSDELIEVIARNPKVAKSVHLPVQSGSNRILKLMNRSYTKEEYLALLERIRS 286

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT-PGSNMLEQVD 383
             PD+AISSD IVGFP ET++DF  T+DLV+K  + +     YSPR GT    +  ++V 
Sbjct: 287 KVPDVAISSDIIVGFPTETEEDFMETIDLVEKAQFERLNLAIYSPRKGTVAWKHYKDEVP 346

Query: 384 ENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440
              K  R   L+ LQK++  +    N+   G+ + V++E   K  G   GR    + +  
Sbjct: 347 YEEKVRRMQFLMNLQKRINRK---LNERYKGKTVRVIVEAQAK-NGLFYGRDIRNKIIAF 402

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
             +   IG    V+I  +    LYG++V
Sbjct: 403 EGEEWMIGRFADVKIEKITAGPLYGKVV 430


>gi|283797908|ref|ZP_06347061.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Clostridium sp. M62/1]
 gi|291074375|gb|EFE11739.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Clostridium sp. M62/1]
 gi|295091886|emb|CBK77993.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Clostridium cf.
           saccharolyticum K10]
          Length = 483

 Score =  284 bits (727), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 168/445 (37%), Positives = 262/445 (58%), Gaps = 16/445 (3%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           F ++++GCQMN +DS ++E +    G+ + ++ ++ADL++ NTC +RE A ++VY  LG 
Sbjct: 48  FHIETFGCQMNAHDSEKLEGILLEAGFVKTDT-EEADLVLYNTCTVRENANQRVYGRLGY 106

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELL-ERA 143
           + +LK    K+   +L+ + GC+ Q +   E+I +    V+V+ G    Y+L ELL  R 
Sbjct: 107 LNSLK----KKNPRMLIGLCGCMMQEDQVVEKIKKTYRFVDVIFGTHNIYKLAELLFARL 162

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             GK V+D  +   DK     + D    RK    + + I  GC+ FC++C+VPY RG E 
Sbjct: 163 HTGKMVIDI-WKDTDKI----VEDLPSERKYPFKSGVNIMFGCNNFCSYCIVPYVRGRER 217

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR    ++ E   L+ +GV E+ LLGQNVN++ GK L  E  TF++LL  + +I+GL R+
Sbjct: 218 SRRPEDIIKEIEGLVADGVVEVMLLGQNVNSY-GKNLP-EPITFAELLRRVEQIEGLERI 275

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+ TSHP+D+SD LI+   D   +  +LHLP+QSGS RIL  MNRR+T  +Y  + ++I+
Sbjct: 276 RFMTSHPKDLSDELIEVMRDSKKICRHLHLPLQSGSSRILGQMNRRYTKEQYLALAEKIK 335

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           +  PDI++++D IVGFPGET +DF  T+D+V K+ Y  AF+F YS R GTP + M  QV 
Sbjct: 336 TAIPDISLTTDIIVGFPGETKEDFEETLDVVRKVRYDSAFTFIYSKRTGTPAAVMENQVP 395

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRSPWLQSVVLNS 442
           E+V  ER   L  +++      +   V  + +VL+E+     +G + GR     +V    
Sbjct: 396 EDVIKERFDRLLSEVQRISNEISGRDVHTVQKVLVEEPDTHAEGMVTGRLSNNITVHFEG 455

Query: 443 KNHNIGDIIKVRITDVKISTLYGEL 467
               IG I+ V + + K     G+L
Sbjct: 456 SRELIGKIVDVYLEESKGFYYMGKL 480


>gi|288925880|ref|ZP_06419810.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella buccae D17]
 gi|288337304|gb|EFC75660.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella buccae D17]
          Length = 444

 Score =  284 bits (727), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 165/451 (36%), Positives = 265/451 (58%), Gaps = 17/451 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F+++YGCQMNV DS  +  +    GYE     ++AD I LNTC +RE A  K+Y   
Sbjct: 3   KKLFIETYGCQMNVADSEVVASVMKMAGYELCEKEEEADAIFLNTCSVRENAENKIYH-- 60

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R+  L   R K+G +L++ V GC+A+   ++++      ++V GP +Y  LP+++ +  
Sbjct: 61  -RLDTLHAER-KKGRELILGVLGCMAERVKDDLIDNHH-ASLVCGPDSYLNLPDMVAQCE 117

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G + +D + S  + +  +     G N    V+ F++I  GC+ FC +C+VP+TRG E S
Sbjct: 118 MGNKAIDIELSKTETYRDVIPQRIGGNH---VSGFVSIMRGCNNFCHYCIVPFTRGRERS 174

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAW----RGK-GLDGEKCTFSDLLYSLSEIKG 259
           R +  ++ E   L D G  E+TLLGQNVN++     GK   DG   +F+ LL  ++E   
Sbjct: 175 RDVESILKEVCDLRDRGFKEVTLLGQNVNSYGLLPNGKRPADG--TSFAQLLRKVAETVP 232

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
            +R+R+TTS+P DM+D +++A  D+  L  ++H P QSGSD++L+ MNR++T  +Y   +
Sbjct: 233 EMRVRFTTSNPEDMTDDIVQAVADMPNLCNHIHFPAQSGSDKVLRLMNRKYTRQQYLDKV 292

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
             I+ + PD  I++D  VG+  E+++D++ T+ LV ++GY  AF FKYS R GT  +  L
Sbjct: 293 ATIKRLIPDCGITTDIFVGYHDESEEDYQQTLSLVREVGYDSAFMFKYSERPGTYAAEHL 352

Query: 380 -EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQS 437
            + V E  K  RL  L K   E     N    G+   +LIE   K  + +L+GR+   ++
Sbjct: 353 PDNVPEEEKVRRLNELIKLQTEISALQNKKDEGKEFVILIENFSKRSRQQLMGRTEQNKA 412

Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           VV++  NH+IG+ +KVRIT    +TL+GE V
Sbjct: 413 VVIDKGNHHIGEFVKVRITGSTSATLFGEEV 443


>gi|119026050|ref|YP_909895.1| (dimethylallyl)adenosine tRNA methylthiotransferase
           [Bifidobacterium adolescentis ATCC 15703]
 gi|229890431|sp|A1A280|MIAB_BIFAA RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|118765634|dbj|BAF39813.1| hypothetical protein [Bifidobacterium adolescentis ATCC 15703]
          Length = 480

 Score =  284 bits (727), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 160/400 (40%), Positives = 244/400 (61%), Gaps = 23/400 (5%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGY----ERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           F+V + GCQMNV+DS R+  +  + GY    E      D DLIV+NTC +RE AAE++Y 
Sbjct: 27  FYVHTLGCQMNVHDSERIAGVLEADGYVPATEEQYLNHDIDLIVMNTCAVRENAAERMYG 86

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +G    LK  R     +L + V GC+AQ + E+I +++P V+ V G +    LP+LL++
Sbjct: 87  TIGLWAELKRER----PNLQIAVGGCMAQLDREKIAKKAPWVDAVFGTKNIGSLPQLLDQ 142

Query: 143 ARF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           AR  G   V     +     +L       +R   V++++ I  GC+  CTFC+VP TRG 
Sbjct: 143 ARIEGHAQVKVQEELNYFPSQLPT-----DRASKVSSWVAISVGCNNTCTFCIVPTTRGK 197

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E  R    ++ E R+ +D G  E+TLLGQNVN++ G G+ G++  FS LL +  EI GL 
Sbjct: 198 EHDRRPGDILAEIRQCVDEGAKEVTLLGQNVNSF-GYGI-GDRFAFSKLLRACGEIDGLE 255

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+T+ HP   +D +I A  +   +M  LH P+QSGSDRIL++M R + + ++  I+ +
Sbjct: 256 RVRFTSPHPAAFTDDVIAAMAETPNVMHQLHFPLQSGSDRILRAMRRSYRSAKFLDILRK 315

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           IR   PD  IS+D IVGFPGET++DF+ T+ +V++  +A AF+F YSPR GTP + M EQ
Sbjct: 316 IREAMPDAQISTDIIVGFPGETEEDFQETLRVVEEARFASAFTFIYSPRPGTPAAEM-EQ 374

Query: 382 VDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLI 418
           V  +V   + ERL+ LQ+++ E+ +   +   G+ +EV++
Sbjct: 375 VPHDVVQDRFERLVALQERITEENLKTFE---GRDVEVMV 411


>gi|237737681|ref|ZP_04568162.1| MIAB protein [Fusobacterium mortiferum ATCC 9817]
 gi|229419561|gb|EEO34608.1| MIAB protein [Fusobacterium mortiferum ATCC 9817]
          Length = 444

 Score =  284 bits (726), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 159/441 (36%), Positives = 266/441 (60%), Gaps = 16/441 (3%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           +YGCQMNV +S +++ MF + GYE  ++++++D+  LNTC +RE AA ++Y  LG +++ 
Sbjct: 16  TYGCQMNVNESAKIKKMFQNMGYEITDNIEESDVTFLNTCTVREGAATQIYGKLGELKH- 74

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG--KR 148
               IKE   +++ V GC AQ +G E++++ P +++V+G Q   R+P+ ++    G  K 
Sbjct: 75  ----IKENKGMIIGVTGCFAQEQGIELVKKFPQIDIVMGNQNIGRIPQAIDDIEHGVDKH 130

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           +V TD   +D   RL   D  ++ K+  TA ++I  GC+ FC +C+VPY RG E S  ++
Sbjct: 131 LVFTDCE-DDLPPRL---DADFDSKK--TASISITYGCNNFCAYCIVPYVRGRERSVPMT 184

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
           +++ + R+ ++ G  EI LLGQNVN++  +  +G+   F+ LL  + +++G   +R+ + 
Sbjct: 185 EILHDVRQYVEKGYKEIILLGQNVNSYGKEFKNGD--NFARLLEEICKVEGDFIVRFVSP 242

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
           HPRD +D +I      + +   LHLP+Q+GS  ILK+MNR +T  +Y  + ++I+     
Sbjct: 243 HPRDFTDEVIDVIAKNEKIARSLHLPLQAGSSTILKAMNRGYTKEQYIALANKIKERILG 302

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           +A+++D IVGFPGET++DF+ T+D+V +I +  +F F YS R GT  + M  Q+DE VK 
Sbjct: 303 VALTADVIVGFPGETEEDFQDTLDVVRQIQFENSFMFMYSIRKGTKAATMENQIDEAVKK 362

Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRSPWLQSVVLNSKNHNI 447
           +RL  L        ++ +   VG+   VL+E   K+ K  L GR+   + V+        
Sbjct: 363 DRLQRLIDVQTACSLAESKTYVGKTFRVLVEGESKKNKEVLSGRTSTNKIVLFKGDKALE 422

Query: 448 GDIIKVRITDVKISTLYGELV 468
           G  + V+I D K  TLYGE+V
Sbjct: 423 GTFVNVKINDCKTWTLYGEIV 443


>gi|50955210|ref|YP_062498.1| hypothetical protein Lxx15990 [Leifsonia xyli subsp. xyli str.
           CTCB07]
 gi|81390772|sp|Q6AE03|MIAB_LEIXX RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|50951692|gb|AAT89393.1| conserved hypothetical protein [Leifsonia xyli subsp. xyli str.
           CTCB07]
          Length = 535

 Score =  284 bits (726), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 154/398 (38%), Positives = 242/398 (60%), Gaps = 23/398 (5%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           + V+++GCQMNV+DS R+     + GY   N  ++AD++V+NTC +RE A  K+Y  LG 
Sbjct: 26  YEVRTFGCQMNVHDSERLSGSLEAAGYVPANG-EEADIVVINTCAVRENADNKLYGNLGH 84

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           + ++K    +    + + V GC+AQ +   IL ++P V+VV G      LP LLERAR  
Sbjct: 85  LASVK----RRHAGMQIAVGGCLAQKDKNVILEKAPWVDVVFGTHNMGALPRLLERARH- 139

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKR--GVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
                 D +  +  E L         KR    + +++I  GC+  CTFC+VP  RG E  
Sbjct: 140 -----NDAAEIEILEALETFPSTLPTKRDSSFSGWVSISVGCNNTCTFCIVPALRGKEKD 194

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRL 263
           R    ++ E + L+D G  E+TLLGQNVN++   G++ G++  FS LL +  +I+GL R+
Sbjct: 195 RRPGDILAEVQALVDEGAVEVTLLGQNVNSY---GVEFGDRQAFSKLLRAAGQIEGLERI 251

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+T+ HP   ++ +I A  +   +MP LH+P+QSGSDRIL+SM R + + ++  I+DR+R
Sbjct: 252 RFTSPHPAAFTEDVIDAMAETPNVMPQLHMPLQSGSDRILRSMRRSYRSEKFLGILDRVR 311

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           +  P  AIS+D IVGFPGET++DF  T+ +V+   +A AF+F+YS R GTP + M  QV 
Sbjct: 312 AKLPGAAISTDIIVGFPGETEEDFLDTLRVVEAARFASAFTFQYSIRPGTPAATMAGQVP 371

Query: 384 ENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLI 418
           + V  E   RL+ LQ+++  ++   N+  +G+ +E+L+
Sbjct: 372 KEVVQERYDRLIALQERISLEE---NEKLIGRDVELLV 406


>gi|312139388|ref|YP_004006724.1| tRNA modification enzyme miab [Rhodococcus equi 103S]
 gi|311888727|emb|CBH48039.1| putative tRNA modification enzyme MiaB [Rhodococcus equi 103S]
          Length = 505

 Score =  284 bits (726), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 153/418 (36%), Positives = 247/418 (59%), Gaps = 24/418 (5%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           + V++YGCQMNV+DS R+  +    GY +    + ADL+V NTC +RE A  K+Y  L  
Sbjct: 12  YEVRTYGCQMNVHDSERLSGLLEDAGYTKAVPGEQADLVVFNTCAVRENADNKLYGNLSH 71

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           +  +K  R      + + V GC+AQ + + +++++P V+VV G      LP LLERAR  
Sbjct: 72  LAPVKEERP----GMQIAVGGCLAQKDRDTVVKKAPWVDVVFGTHNIGSLPALLERARHN 127

Query: 147 KRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           ++  V+   S+E     L        R+     +++I  GC+  CTFC+VP  RG E+ R
Sbjct: 128 EQAQVEILESLEAFPSTLPA-----KRESAYAGWVSISVGCNNTCTFCIVPSLRGKEVDR 182

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE----KCTFSDLLYSLSEIKGLV 261
               ++ E + L++ GV E+TLLGQNVN++     D E    +  F+ LL +  +I GL 
Sbjct: 183 RPGDILAEVQALVNEGVLEVTLLGQNVNSYGVSFADPELPRDRGAFAKLLSACGQIDGLE 242

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+T+ HP + +D +I+A      + P LH+P+QSGSDR+LK+M R + + ++  II++
Sbjct: 243 RVRFTSPHPAEFTDDVIEAMATTPNVCPQLHMPLQSGSDRVLKAMRRSYRSAKFLGIIEK 302

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R+  P  AI++D IVGFPGET++DF+AT+D+V +  +  AF+F+YS R GTP + M  Q
Sbjct: 303 VRAAMPHAAITTDIIVGFPGETEEDFQATLDVVRQARFTSAFTFQYSKRPGTPAAEMNGQ 362

Query: 382 VDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIE----KHGKEKGKLVGRS 432
           + + V  E   RL+ LQ+++  ++   N   VG  +E+L+     +   E  ++ GR+
Sbjct: 363 LPKAVVQERYDRLIALQEEITLEE---NRKLVGTEVELLVTAGDGRKNAETARMSGRA 417


>gi|284048550|ref|YP_003398889.1| RNA modification enzyme, MiaB family [Acidaminococcus fermentans
           DSM 20731]
 gi|283952771|gb|ADB47574.1| RNA modification enzyme, MiaB family [Acidaminococcus fermentans
           DSM 20731]
          Length = 442

 Score =  284 bits (726), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 162/452 (35%), Positives = 253/452 (55%), Gaps = 27/452 (5%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + + + +YGCQMN  DS          GY       DAD+I++NTC +RE A +K+   +
Sbjct: 3   KHYTILNYGCQMNESDSEHYAGQLSDLGYHYTEDYHDADVILINTCCVRESAEKKILGKI 62

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           G ++ +K    +E    ++ V GC+AQ +GE+ L++ P V++++G         +L+   
Sbjct: 63  GEMKQVK----REDPSKVLCVTGCMAQKDGEDFLKKYPQVDLLIGTAHVNNFSAILQ--- 115

Query: 145 FGKRVVDTDYSVEDK---FERLSIV----DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197
                 D  +  + K   F  L+++    +G + RK    A++ I  GC+ FCT+C+VPY
Sbjct: 116 ------DYLHQTQRKSGMFNDLTVMPREFEGHFVRKSSYAAWVPIMYGCNNFCTYCIVPY 169

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSE 256
            RG E SRS   + +E RK +D G  E TLLGQNVN++   G D G+K  F+ LL  +  
Sbjct: 170 VRGRERSRSAEAICEEIRKAVDQGYREFTLLGQNVNSY---GKDRGDKDAFAALLRQVDA 226

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           I G+ R+RY TSHPRDMS+ LI+   +   +  + H+PVQSGS RI+++MNR +T   Y 
Sbjct: 227 IPGVERVRYMTSHPRDMSEELIRTVAESKHVCKHFHIPVQSGSTRIMQAMNRGYTRESYL 286

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
            ++D IR   P+  +++D IVGFPGET++DF+ T+ L D++ Y  A++F YS R GTP +
Sbjct: 287 HLVDTIRKYVPEAVLTTDIIVGFPGETEEDFQETLSLFDRVSYDAAYTFIYSKRSGTPAA 346

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL-VGRSPWL 435
            M  QV E VK +RL  L +      +  N   VG+ + V++E       K+  GR+   
Sbjct: 347 AMEAQVPEAVKKDRLNRLMELQNRHSLKHNQKLVGRTLPVMVEGLSHNNSKMWSGRTDGN 406

Query: 436 QSVV--LNSKNHNIGDIIKVRITDVKISTLYG 465
           + V+  +  +  N GD++ V I   +   L G
Sbjct: 407 KLVLWPVGERFFNPGDLVPVTIETAQTWLLKG 438


>gi|305666326|ref|YP_003862613.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Maribacter sp. HTCC2170]
 gi|88708318|gb|EAR00555.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Maribacter sp. HTCC2170]
          Length = 481

 Score =  284 bits (726), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 168/459 (36%), Positives = 260/459 (56%), Gaps = 22/459 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +  F++SYGC MN  DS  +  +  ++G+     ++DADL+++NTC IREKA   V   L
Sbjct: 24  RNLFIESYGCAMNFSDSEIVASILANEGFNTTQKLEDADLVLVNTCSIREKAELTVRKRL 83

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            +   +K  R      + V V GC+A+    ++L    IV++VVGP  Y  LP L++   
Sbjct: 84  EKYNAIKKKR----PHMKVGVLGCMAERLKSKLLEEEKIVDMVVGPDAYKDLPNLIQEID 139

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G+  V+   S ++ +  ++ V    N   GV+A ++I  GCD  CTFCVVP+TRG E S
Sbjct: 140 EGREAVNVILSKDETYGDIAPVRLNTN---GVSALVSITRGCDNMCTFCVVPFTRGRERS 196

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNA--WRGKGL--DGEKCT---------FSDLL 251
           R    ++ E   L + G  EITLLGQNV++  W G GL  D +K +         F++LL
Sbjct: 197 RDSQSIIAEVNDLWNKGFKEITLLGQNVDSYLWYGGGLKKDFDKASEMQIATAVDFANLL 256

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
             ++E +  + +R++TS+P+DMS  +IK     D +  ++HLPVQSGS+RILK+MNR HT
Sbjct: 257 DMVAEAQPKMWIRFSTSNPQDMSLDVIKTMAKHDNICNHIHLPVQSGSNRILKAMNRLHT 316

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
             EY ++ID IR + P+IA+S D I GFP ET++D + T+ ++D++ Y   + + YS R 
Sbjct: 317 IEEYFELIDNIRKIIPEIALSHDMISGFPTETEEDHQDTLAVLDRVKYDYGYMYSYSERP 376

Query: 372 GTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV- 429
           GT  +  M + + E  K  RL  +    RE      +  +G + E+LIE   K+   +  
Sbjct: 377 GTMAARKMDDDIPEKTKQRRLSEIIALQREHCQFRTEKHLGSVQEILIEGTSKKDETMWK 436

Query: 430 GRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           GR+      V   +N+ +GD + V++ D   +TL GE V
Sbjct: 437 GRNSQNVVAVFPKENYKLGDFVDVKMNDCTSATLIGEAV 475


>gi|315502601|ref|YP_004081488.1| RNA modification enzyme, miab family [Micromonospora sp. L5]
 gi|315409220|gb|ADU07337.1| RNA modification enzyme, MiaB family [Micromonospora sp. L5]
          Length = 499

 Score =  284 bits (726), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 159/417 (38%), Positives = 247/417 (59%), Gaps = 21/417 (5%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDD-ADLIVLNTCHIREKAAEKVYS 82
           P+ + V++YGCQMNV+DS R+  +    GY R    D+  D++V NTC +RE A  ++Y 
Sbjct: 9   PRTYQVRTYGCQMNVHDSERISGLLEDAGYVRAAEADEQPDVVVFNTCAVRENADNRLYG 68

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            LG +R +K    K  G + + V GC+AQ +  +I+R++P V+VV G      LP LL+R
Sbjct: 69  NLGHLRPVK---AKHPG-MQIAVGGCLAQKDRGDIVRKAPWVDVVFGTHNIGSLPALLDR 124

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT--AFLTIQEGCDKFCTFCVVPYTRG 200
           AR      +    VE   E L +       +R  T   +++I  GC+  CTFC+VP  RG
Sbjct: 125 ARH-----NAAAEVE-ILESLEVFPSTLPTRRESTYAGWVSISVGCNNTCTFCIVPSLRG 178

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKG 259
            E  R    ++ E R L+D+GV E+TLLGQNVN++   G++ G++  F  LL +  +I G
Sbjct: 179 KEKDRRPGDILSEVRALVDSGVLEVTLLGQNVNSY---GVEFGDRYAFGKLLRACGDIDG 235

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           L R+R+T+ HP+D +D +I A  +   +   LH+P+QSGSD +L++M R + +  Y  II
Sbjct: 236 LERVRFTSPHPKDFTDDVIAAMAETPNVCHSLHMPLQSGSDDVLRAMRRSYRSERYLGII 295

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
           +++R+  PD AI++D IVGFPGET+ DF  T+D+V +  ++ AF+F+YS R GTP + M 
Sbjct: 296 EKVRAAMPDAAITTDIIVGFPGETEADFARTLDVVREARFSSAFTFQYSKRPGTPAATMD 355

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE----KHGKEKGKLVGRS 432
            Q+ + V  ER   L   + E   + N   VG+ +EVL+     +  +  G++ GR+
Sbjct: 356 GQLPKQVVQERYERLIACVEEITWAENKKLVGETVEVLVAVGEGRKDERTGRMSGRA 412


>gi|229815363|ref|ZP_04445698.1| hypothetical protein COLINT_02409 [Collinsella intestinalis DSM
           13280]
 gi|229809143|gb|EEP44910.1| hypothetical protein COLINT_02409 [Collinsella intestinalis DSM
           13280]
          Length = 453

 Score =  284 bits (726), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 161/451 (35%), Positives = 258/451 (57%), Gaps = 18/451 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + +F++++GCQMN++DS R+  +  S G    +S  DAD+++  TC +RE A  ++Y   
Sbjct: 10  KTYFIRTFGCQMNLHDSERVSGLLDSCGCLVASSPADADIVIFMTCCVREAADTRLY--- 66

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           G+  + K+      G  ++ V GC+AQ +GE +L     V+V+ G  +   + +LL  A 
Sbjct: 67  GQCSSCKSLPASPSGKRVIAVGGCIAQRDGEGLLTNLDNVDVIFGTHSIAHVADLLADA- 125

Query: 145 FGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
                 D D+ V  ++ +  +  D  ++R+    A++ I  GC+ FC++C+VPY RG E 
Sbjct: 126 ----FADGDHHVRVEEIDTGAATDMPWHRETAYHAWVPIMTGCNNFCSYCIVPYVRGREK 181

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR + ++VDE   L+  GV  ITLLGQNVN++ G+  D +   F++LL  + +  G+ R+
Sbjct: 182 SRPMDEIVDEVTGLVRQGVRSITLLGQNVNSY-GRDHDHDP-RFAELLRRVGD-TGIERI 238

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
            +T+SHP+D+    I A  ++  +MP LHL VQSGS RILK MNR++T  +Y  ++ R+R
Sbjct: 239 YFTSSHPKDLLPETIDAMAEVPAVMPQLHLAVQSGSSRILKLMNRKYTREQYLDLVQRVR 298

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              P+IA+++D IVGFPGE ++DF  T+ LVD+  +AQAF+F YS R GTP + +++   
Sbjct: 299 DRIPNIALTTDIIVGFPGEAEEDFEQTVSLVDEAKFAQAFTFIYSKREGTPAAKIVDPTP 358

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSPWLQSVVLN- 441
            +V  ER   L K + +    FN   +   + +LIE    K+   L G+SPW Q+V    
Sbjct: 359 RSVIQERFDRLVKHVEQTAFDFNQGSLDTTVPMLIEGTSKKDPNVLQGKSPWNQTVHCPV 418

Query: 442 ----SKNHNIGDIIKVRITDVKISTLYGELV 468
                    IG +I V +   +   L G  V
Sbjct: 419 PAGVDPTTLIGKVIDVHVDTARTWYLAGASV 449


>gi|261414864|ref|YP_003248547.1| RNA modification enzyme, MiaB family [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|261371320|gb|ACX74065.1| RNA modification enzyme, MiaB family [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|302326764|gb|ADL25965.1| tRNA-i(6)A37 modification enzyme MiaB [Fibrobacter succinogenes
           subsp. succinogenes S85]
          Length = 440

 Score =  284 bits (726), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 168/460 (36%), Positives = 262/460 (56%), Gaps = 37/460 (8%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +++ + +YGCQMN YDS  +       G    N+ +DAD+I++NTC +REKA E     +
Sbjct: 2   KKYHLATYGCQMNEYDSAMIAQELDMCGCVETNNQEDADIIIVNTCSVREKAEETAIVNI 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            +++ L+    K+  D+ VVV GC+A+  G E+L+R   VN +VGP  Y ++PELL    
Sbjct: 62  SKLKYLR----KKNPDVKVVVCGCMAKNRGPELLKRLKNVNYIVGPDQYRKIPELL---- 113

Query: 145 FGKRVVDTDYSVEDKFERLSIVD-------GGYNR-KRGVTAFLTIQEGCDKFCTFCVVP 196
           FG    D    +     ++ I +       G Y + +  V+AF+ IQ GC+K C++C+VP
Sbjct: 114 FG----DAQSPLHKTHHKMFIDEDRDENYLGEYAKLQNDVSAFVAIQRGCNKRCSYCIVP 169

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256
           Y RG E  R +  V+ E ++  D G+ E+ LLGQ VNA++    D     F+ LL  +SE
Sbjct: 170 YLRGPEKYRDMDDVLTEVKRAADKGITEVMLLGQTVNAYKTPNAD-----FTTLLTKVSE 224

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           I G+ R+R+T+ HPR  ++ LI    +   +  Y H+P+QSGSD ILK M R+H   +Y 
Sbjct: 225 IGGIKRIRFTSPHPRHYTNELIDVLLNNPKVCHYAHIPLQSGSDAILKKMRRQHNMEQYM 284

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
            +I+++RS  P  AIS+D I GF GETD+DF  T+   +   +  A+ F YSPR GT   
Sbjct: 285 TVIEQLRSKDPYYAISTDVICGFVGETDEDFEQTIKAFEACQFDTAYMFIYSPRKGTESF 344

Query: 377 N---MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG--KEKGKLVGR 431
           N   +L   +++ +  RL+ LQ  +    +  N   +G+  E+L+E HG  ++K +LVG+
Sbjct: 345 NEAEILTPEEKSARHSRLVELQNAI---TLKRNQMMIGRTEEILVE-HGSTRDKTELVGK 400

Query: 432 SPWLQSVVLNSKNHNI---GDIIKVRITDVKISTLYGELV 468
           +   + V+   +   I   GD +KV+I D++  TL G LV
Sbjct: 401 TDNFKKVIFKPEEGRIIKPGDYVKVKIDDIRGWTLRGTLV 440


>gi|87302974|ref|ZP_01085778.1| hypothetical protein WH5701_07366 [Synechococcus sp. WH 5701]
 gi|87282470|gb|EAQ74429.1| hypothetical protein WH5701_07366 [Synechococcus sp. WH 5701]
          Length = 474

 Score =  284 bits (726), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 175/458 (38%), Positives = 262/458 (57%), Gaps = 30/458 (6%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           +++ ++GCQMN  DS RM  +    GY+  +    ADL++ NTC IR+ A +KVYS+LGR
Sbjct: 24  YWITTFGCQMNKADSERMAGILEGMGYQPGSDEHSADLVLYNTCTIRDNAEQKVYSYLGR 83

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
               +  R +    L +VVAGCVAQ EGE +LRR P +++V+GPQ   RL  LLE+   G
Sbjct: 84  ----QAQRKRTNPHLTLVVAGCVAQQEGESLLRRVPELDLVMGPQHANRLDTLLEQVASG 139

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           ++VV T        E ++       R   V A++ +  GC++ CT+CVVP  RG E SRS
Sbjct: 140 QQVVAT--GEHHILEDITTA----RRDSQVCAWVNVIYGCNERCTYCVVPSVRGKEQSRS 193

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG------EKCTFSDLLYSLSEIKGL 260
              +  E   L + G  EITLLGQN++A+ G+ L G       + T +DLL+ + ++ G+
Sbjct: 194 PGAIRLEMEGLAERGFKEITLLGQNIDAY-GRDLPGITPQGRRQHTLTDLLHHVHDVAGI 252

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+ TSHPR  ++ LI A  +L  L  + H+P QSG D +LK+M R +T   YR+I++
Sbjct: 253 ERIRFATSHPRYFTERLIDACAELPKLCEHFHIPFQSGDDDVLKAMARGYTVDRYRRILE 312

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           RIR   PD AIS+D IV FPGE+D  +R T+ L++ IG+ Q  +  YSPR  TP ++  +
Sbjct: 313 RIRERMPDAAISADVIVAFPGESDAQYRRTLALIEAIGFDQVNTAAYSPRPNTPAADWPD 372

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRS------- 432
           Q+ E VK ERL  L   +       ++  +G+I +VL+E  + ++ G+ +GR+       
Sbjct: 373 QLPEAVKVERLQELNALVERTARQRSERYLGRIEQVLVEGTNPRDPGQRMGRTRTNRLTF 432

Query: 433 -----PWLQSVVLNSKNHNIGDIIKVRITDVKISTLYG 465
                P      L       GD++ VRI  V+  +L G
Sbjct: 433 FPDLAPSRSPAELEGGIIQPGDLVNVRIEKVRAFSLTG 470


>gi|309811287|ref|ZP_07705076.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Dermacoccus sp. Ellin185]
 gi|308434769|gb|EFP58612.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Dermacoccus sp. Ellin185]
          Length = 512

 Score =  284 bits (726), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 165/455 (36%), Positives = 265/455 (58%), Gaps = 46/455 (10%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSM------DDADLIVLNTCHIREKAAEKV 80
           + V+++GCQMNV+DS R+  +    GY    ++      ++ DL+V NTC +RE AA K+
Sbjct: 7   YEVRTHGCQMNVHDSERISGLLEQAGYTDFAALPETERSENPDLVVFNTCAVRENAANKL 66

Query: 81  YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140
           Y  LG +R  K++       + + V GC+AQ +   I+ R+P V+VV G      LP LL
Sbjct: 67  YGNLGHLRPTKDATPG----MQIAVGGCLAQKDRATIVERAPWVDVVFGTHNVGSLPALL 122

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKR--GVTAFLTIQEGCDKFCTFCVVPYT 198
           +RAR      + +  VE   E L +       +R    + +++I  GC+  CTFC+VP  
Sbjct: 123 DRARH-----NAEAQVE-ILESLEVFPSTLPTRRDSAYSGWVSISVGCNNTCTFCIVPAL 176

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEI 257
           RG E  R   +++ E + L+  GV EITLLGQNVN +   G++ G++  FS LL +  EI
Sbjct: 177 RGKEKDRRPGEILAEVKALVAQGVVEITLLGQNVNTY---GVEFGDRHAFSKLLRACGEI 233

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
           +GL R+R+T+ HP   +D +I A  +   +MP LH+P+QSGSD++LK M R + + ++  
Sbjct: 234 EGLERVRFTSPHPAAFTDDVIDAMAETPNVMPSLHMPLQSGSDKVLKDMRRSYRSKKFLG 293

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
           II+++R   PD AI++D IVGFPGET++DF+ T+D+V+   ++ AF+F+YS R GTP + 
Sbjct: 294 IIEKVREKMPDAAITTDIIVGFPGETEEDFQGTLDVVEASRFSSAFTFQYSIRPGTPAAT 353

Query: 378 MLEQVDENV---KAERLLCLQKKL-----REQQVSFNDACVGQIIEVLIE----KHGKEK 425
           M +Q+ + V   + ERL+ LQ+++     REQ+        G+ +EVL+     +   E 
Sbjct: 354 MDDQIPKEVVQERFERLIELQERVSWAGNREQE--------GRTVEVLVAPSEGRKDAET 405

Query: 426 GKLVGRSPWLQ----SVVLNSKNHNIGDIIKVRIT 456
            ++ GR+   +    +V   +K    GD++ V +T
Sbjct: 406 HRMSGRARDNRLVHFAVPEGAKRPRPGDMVTVDVT 440


>gi|313901066|ref|ZP_07834554.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Clostridium sp. HGF2]
 gi|312954024|gb|EFR35704.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Clostridium sp. HGF2]
          Length = 478

 Score =  284 bits (726), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 170/448 (37%), Positives = 257/448 (57%), Gaps = 16/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +++++++YGCQ N  DS  +  +     +  V   +DADLI++NTC IR+ A +KV   +
Sbjct: 43  KKYYLRTYGCQANERDSETLAGILEEMNFTAVEHPEDADLILMNTCAIRKNAEDKVLGEI 102

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G ++ LK  +     DLL  + GC+AQ E    ++L     VN++ G    +RLPELL  
Sbjct: 103 GSLKRLKRKK----PDLLFGLCGCMAQEEDVVAKLLETYRHVNLIFGTHNIHRLPELLYD 158

Query: 143 ARF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
               G R V+      D  E L +   G ++     A++ I  GCDKFCT+C+VPYTRG 
Sbjct: 159 VMVNGNRSVEVLSKEGDVIENLPVRRFGKHK-----AWVNIMYGCDKFCTYCIVPYTRGK 213

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR +  +++E R L   G  EITLLGQNVN++ GK L  E   F+ LL   ++I G+ 
Sbjct: 214 ERSRMMEDILEEVRILKAEGFKEITLLGQNVNSY-GKDLHMEG-GFAGLLEETAKI-GIE 270

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHP D +D +I      + +MP++HLPVQSG   ILK M RR+T  +Y  +  +
Sbjct: 271 RIRFTTSHPWDFTDEMIDVIARYENIMPFIHLPVQSGDSDILKIMGRRYTREQYLTLFHK 330

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I+   P  AIS+D IVGFP ET++ F+ T+ LVD+  +  AF+F YSPR GTP ++M + 
Sbjct: 331 IKERIPHCAISTDIIVGFPNETEEQFQNTLSLVDECRFDNAFTFIYSPREGTPAASMADN 390

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GRSPWLQSVVL 440
           V+  VK  RL  L ++        N+  +G +++VL++   K+  ++  G +   + V  
Sbjct: 391 VELAVKQRRLQELNERWNLYAREKNEEYLGSVVKVLVDGASKKNPEVFSGYTETNKLVNF 450

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                  GDI+ V+IT  K  +L GE +
Sbjct: 451 RRTTAQSGDIVSVKITACKTFSLDGEQI 478


>gi|313140558|ref|ZP_07802751.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB
           41171]
 gi|313133068|gb|EFR50685.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB
           41171]
          Length = 480

 Score =  283 bits (725), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 157/403 (38%), Positives = 247/403 (61%), Gaps = 29/403 (7%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGY----ERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           F+V + GCQMNV+DS R+  +    GY    E   +  D DLI++NTC +RE AAE++Y 
Sbjct: 27  FYVHTLGCQMNVHDSERIAGVLEDDGYIPATEEQAADKDVDLIIMNTCAVRENAAERMYG 86

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +G   +LK +      ++ + + GC+AQ + + I +++P V+ V G +    LP LL++
Sbjct: 87  TIGLWADLKRTH----PNMQIAIGGCMAQLDRKRIAQKAPWVDAVFGTKNIGSLPRLLDQ 142

Query: 143 ARFGKRVVDTDYSVEDKFE----RLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
           AR           V DK +    +L +      R   V+++++I  GC+  CTFC+VP T
Sbjct: 143 ARMAGTC---QVEVADKLDYFPSQLPVA-----RASKVSSWVSISIGCNNTCTFCIVPTT 194

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258
           RG E  R    ++ E R+ +D G  E+TLLGQNVN++ G G+ G++  FS LL +  +I+
Sbjct: 195 RGKEHDRRPGDILAEIRRCVDEGAKEVTLLGQNVNSF-GYGI-GDRYAFSKLLRACGDIE 252

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           GL R+R+T+ HP   +D +I A  +   +M  LH+P+QSGSD+IL++M R + + ++  I
Sbjct: 253 GLERVRFTSPHPAAFTDDVIAAMAETPNVMHQLHMPLQSGSDKILRAMRRSYRSAKFLDI 312

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           + ++R   PD  IS+D IVGFPGETD+DF ATMD+V +  +  AF+F+YSPR GTP + M
Sbjct: 313 LRKVREAMPDAQISTDIIVGFPGETDEDFEATMDVVRQARFQSAFTFEYSPRPGTPAAEM 372

Query: 379 LEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLI 418
            EQV   V  E   RL+ LQ+++ E++++  +   G+ +EV+I
Sbjct: 373 -EQVPHEVVQERFDRLVKLQEQITEEELAKFE---GRDVEVMI 411


>gi|302866042|ref|YP_003834679.1| RNA modification enzyme, MiaB family [Micromonospora aurantiaca
           ATCC 27029]
 gi|302568901|gb|ADL45103.1| RNA modification enzyme, MiaB family [Micromonospora aurantiaca
           ATCC 27029]
          Length = 499

 Score =  283 bits (725), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 159/417 (38%), Positives = 247/417 (59%), Gaps = 21/417 (5%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDD-ADLIVLNTCHIREKAAEKVYS 82
           P+ + V++YGCQMNV+DS R+  +    GY R    D+  D++V NTC +RE A  ++Y 
Sbjct: 9   PRTYQVRTYGCQMNVHDSERISGLLEDAGYVRAAEADEQPDVVVFNTCAVRENADNRLYG 68

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            LG +R +K    K  G + + V GC+AQ +  +I+R++P V+VV G      LP LL+R
Sbjct: 69  NLGHLRPVK---AKHPG-MQIAVGGCLAQKDRGDIVRKAPWVDVVFGTHNIGSLPALLDR 124

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT--AFLTIQEGCDKFCTFCVVPYTRG 200
           AR      +    VE   E L +       +R  T   +++I  GC+  CTFC+VP  RG
Sbjct: 125 ARH-----NAAAEVE-ILESLEVFPSTLPTRRESTYAGWVSISVGCNNTCTFCIVPSLRG 178

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKG 259
            E  R    ++ E R L+D+GV E+TLLGQNVN++   G++ G++  F  LL +  +I G
Sbjct: 179 KEKDRRPGDILSEVRALVDSGVLEVTLLGQNVNSY---GVEFGDRYAFGKLLRACGDIDG 235

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           L R+R+T+ HP+D +D +I A  +   +   LH+P+QSGSD +L++M R + +  Y  II
Sbjct: 236 LERVRFTSPHPKDFTDDVIAAMAETPNVCHSLHMPLQSGSDDVLRAMRRSYRSERYLGII 295

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
           +++R+  PD AI++D IVGFPGET+ DF  T+D+V +  ++ AF+F+YS R GTP + M 
Sbjct: 296 EKVRAAMPDAAITTDIIVGFPGETEADFARTLDVVREARFSSAFTFQYSKRPGTPAATMD 355

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE----KHGKEKGKLVGRS 432
            Q+ + V  ER   L   + E   + N   VG+ +EVL+     +  +  G++ GR+
Sbjct: 356 GQLPKQVVQERYERLIACVEEITWAENKKLVGETVEVLVAVGEGRKDERTGRMSGRA 412


>gi|78186125|ref|YP_374168.1| hypothetical protein Plut_0237 [Chlorobium luteolum DSM 273]
 gi|123743738|sp|Q3B6A6|MIAB_PELLD RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|78166027|gb|ABB23125.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Chlorobium luteolum DSM
           273]
          Length = 446

 Score =  283 bits (725), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 167/443 (37%), Positives = 248/443 (55%), Gaps = 14/443 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +RF+++++GCQMN  DS  +  +    G+ R ++  DAD+++LNTC +RE A EK+   L
Sbjct: 5   RRFYIQTFGCQMNEADSGIIARVLLDAGFRRADTEQDADVVLLNTCAVRENAVEKIAHLL 64

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             ++  K  R      L V V GCV Q + EE+  R P ++ + GP +Y RLP L++ A 
Sbjct: 65  EHLKGAKKRR----KTLQVGVLGCVPQHQREEMFSRFPAIDFIAGPDSYRRLPSLIDDAA 120

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
              R    D+   + +  +  V  G      ++AF+ +  GC+  C FCVVP+TRG E S
Sbjct: 121 SAVRSAMLDFDPSETYVGIRQVREGR-----ISAFIPVMRGCNNMCAFCVVPFTRGRERS 175

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           + L+ V  EAR+L + G  EITLLGQNVN++          TFS LL +++     VR+R
Sbjct: 176 QPLAMVTGEARELAEAGYREITLLGQNVNSYSDPA---SGATFSALLDAVALAAPDVRIR 232

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +TTSHP+D+S  LI        +  ++HLPVQSGSD +L+ MNR H   EY + I  IR 
Sbjct: 233 FTTSHPKDISVGLIDTIARRPNICRHVHLPVQSGSDSVLRRMNRGHGISEYLEKIRIIRD 292

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML-EQVD 383
             P + +S+D I GF GE ++D RAT+DL+  + +  AF F YS R GT  +  L + V 
Sbjct: 293 ALPGVTLSTDIIAGFCGEREEDHRATLDLLRTVRFDAAFMFHYSTREGTLAARTLPDDVA 352

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNS 442
           E  K  RL  +    +E     N   VG + EVL E   +   G+L+GR+   ++VV + 
Sbjct: 353 ETDKKRRLQEIIDLQQEISAENNRRQVGTVAEVLAESESRRSPGRLLGRTDGNRAVVFDR 412

Query: 443 KNHNIGDIIKVRITDVKISTLYG 465
                GD+++VR+T    +TL G
Sbjct: 413 GECMPGDLVRVRLTSSTSATLSG 435


>gi|312129884|ref|YP_003997224.1| tRNA-i(6)a37 thiotransferase enzyme miab [Leadbetterella byssophila
           DSM 17132]
 gi|311906430|gb|ADQ16871.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Leadbetterella byssophila
           DSM 17132]
          Length = 464

 Score =  283 bits (725), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 167/447 (37%), Positives = 257/447 (57%), Gaps = 11/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ +++SYGCQMN  DS  +  +  S GY   + + +ADLI+LNTC IR+ A ++V + L
Sbjct: 25  KKLYIESYGCQMNFADSEVVASILRSNGYSTTSDVVEADLILLNTCAIRDNAEQRVRNRL 84

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
               ++ NS  K   +L + V GC+A+    + L    +V++VVGP  Y  LP LL    
Sbjct: 85  ----SILNSNKKRNPELKIGVLGCMAERLKTKFLEEEKMVDLVVGPDAYRDLPNLLAEVE 140

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G + V+   S E+ +  ++ +    N   GV+AF++I  GC+  C+FCVVP+TRG E S
Sbjct: 141 EGHKAVNVFLSREETYADITPIRLDSN---GVSAFISIMRGCNNMCSFCVVPFTRGRERS 197

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R    +  EA++L D G  E+TLLGQNV+++  K  + E+ TF++LL  ++ I   +R+R
Sbjct: 198 RDPYSIEKEAKELFDQGYREVTLLGQNVDSYLWKS-ETEQFTFANLLEKIALIHPDLRIR 256

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           ++TSHP+D++D ++      D +  Y+HLP QSGS RIL+ MNR +    Y   IDRIR 
Sbjct: 257 FSTSHPKDITDEVLYTMKKYDNICNYIHLPAQSGSSRILELMNRTYDREWYLGKIDRIRE 316

Query: 325 VR-PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE-QV 382
           +   +  IS D I GF  ET++D + T+ L+D + +   + F YS R GTP +   E  V
Sbjct: 317 ILGEECGISHDLIAGFCTETEEDHQDTLTLMDYVKFDYGYMFYYSERPGTPAAKKYEDDV 376

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVLN 441
            E VK  RL  +  K +E  +  N   VG++  +LIE   K   + L GR+   + VV  
Sbjct: 377 PEEVKKRRLNEIIAKQQEHSLERNQMTVGKVYRILIEGESKRSDEDLCGRTDQNKMVVFP 436

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
            K++  G+ + VRI     +TL GE+V
Sbjct: 437 RKHYKKGEYVNVRILSCSAATLKGEIV 463


>gi|333024041|ref|ZP_08452105.1| putative tRNA-I(6)A37 thiotransferase enzyme MiaB [Streptomyces sp.
           Tu6071]
 gi|332743893|gb|EGJ74334.1| putative tRNA-I(6)A37 thiotransferase enzyme MiaB [Streptomyces sp.
           Tu6071]
          Length = 484

 Score =  283 bits (725), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 169/445 (37%), Positives = 255/445 (57%), Gaps = 29/445 (6%)

Query: 36  MNVYDSLRMEDMFFSQGYERVNSMDD---ADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92
           MNV+DS R+  +    GY R     +   AD++V NTC +RE A  ++Y  LGR+   K 
Sbjct: 1   MNVHDSERLAGLLEGAGYVRAPEGAEDGGADVVVFNTCAVRENADNRLYGNLGRLAPKKT 60

Query: 93  SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV-VD 151
            R      + + V GC+AQ + + I+ R+P V+VV G     +LP LLERAR  +   V+
Sbjct: 61  ERP----GMQIAVGGCLAQKDRQTIVDRAPWVDVVFGTHNIGKLPVLLERARVQEEAQVE 116

Query: 152 TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVV 211
              S+E     L        R+    A++++  GC+  CTFC+VP  RG E  R    ++
Sbjct: 117 IAESLEAFPSTLPT-----RRESAYAAWVSVSVGCNNTCTFCIVPALRGKEKDRRPGDIL 171

Query: 212 DEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270
            E   L+  GV EITLLGQNVNA+   G D G++  FS LL +   I+GL R+R+T+ HP
Sbjct: 172 AEVEALVAEGVSEITLLGQNVNAY---GSDIGDREAFSKLLRACGGIEGLERVRFTSPHP 228

Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330
           RD +D +I A  +   +MP LH+P+QSGSD +L++M R +    Y  II+++R+  PD A
Sbjct: 229 RDFTDDVIAAMAETPNVMPQLHMPLQSGSDTVLRAMRRSYRQDRYLGIIEKVRAAIPDAA 288

Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV---K 387
           IS+D IVGFPGET++DF  T+ +V +  +A AF+F+YS R GTP + M  Q+ + V   +
Sbjct: 289 ISTDIIVGFPGETEEDFEQTLHVVREARFAAAFTFQYSKRPGTPAAEMENQIPKEVVQKR 348

Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKG---KLVGRSPWLQSVVLNSK 443
            ERL+ LQ+++  ++   N   VG+ ++V++ E  G++ G   +L GR+P  + V     
Sbjct: 349 YERLVALQEEISWEE---NKKLVGRTLDVMVAEGEGRKDGATQRLSGRAPDNRLVHFTKP 405

Query: 444 NHNI--GDIIKVRITDVKISTLYGE 466
              +  GD++ V IT      L  E
Sbjct: 406 QEPVRPGDVVTVDITYAAPHHLLAE 430


>gi|325672731|ref|ZP_08152427.1| tRNA-I(6)A37 thiotransferase [Rhodococcus equi ATCC 33707]
 gi|325556608|gb|EGD26274.1| tRNA-I(6)A37 thiotransferase [Rhodococcus equi ATCC 33707]
          Length = 505

 Score =  283 bits (725), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 153/418 (36%), Positives = 247/418 (59%), Gaps = 24/418 (5%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           + V++YGCQMNV+DS R+  +    GY +    + ADL+V NTC +RE A  K+Y  L  
Sbjct: 12  YEVRTYGCQMNVHDSERLSGLLEDAGYTKAVPGEQADLVVFNTCAVRENADNKLYGNLSH 71

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           +  +K  R      + + V GC+AQ + + +++++P V+VV G      LP LLERAR  
Sbjct: 72  LAPVKEERP----GMQIAVGGCLAQKDRDTVVKKAPWVDVVFGTHNIGSLPALLERARHN 127

Query: 147 KRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           ++  V+   S+E     L        R+     +++I  GC+  CTFC+VP  RG E+ R
Sbjct: 128 EQAQVEILESLEAFPSTLPA-----KRESAYAGWVSISVGCNNTCTFCIVPSLRGKEVDR 182

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE----KCTFSDLLYSLSEIKGLV 261
               ++ E + L++ GV E+TLLGQNVN++     D E    +  F+ LL +  +I GL 
Sbjct: 183 RPGDILAEVQALVNEGVLEVTLLGQNVNSYGVSFADPELPRDRGAFAKLLSACGQIDGLE 242

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+T+ HP + +D +I+A      + P LH+P+QSGSDR+LK+M R + + ++  II++
Sbjct: 243 RVRFTSPHPAEFTDDVIEAMATTPNVCPQLHMPLQSGSDRVLKAMRRSYRSAKFLGIIEK 302

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R+  P  AI++D IVGFPGET++DF+AT+D+V +  +  AF+F+YS R GTP + M  Q
Sbjct: 303 VRAAMPHAAITTDIIVGFPGETEEDFQATLDVVRQARFTSAFTFQYSKRPGTPAAEMDGQ 362

Query: 382 VDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIE----KHGKEKGKLVGRS 432
           + + V  E   RL+ LQ+++  ++   N   VG  +E+L+     +   E  ++ GR+
Sbjct: 363 LPKAVVQERYDRLIALQEEITLEE---NRKLVGTEVELLVTAGDGRKNAETARMSGRA 417


>gi|212715618|ref|ZP_03323746.1| hypothetical protein BIFCAT_00517 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660985|gb|EEB21560.1| hypothetical protein BIFCAT_00517 [Bifidobacterium catenulatum DSM
           16992]
          Length = 484

 Score =  283 bits (725), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 159/400 (39%), Positives = 246/400 (61%), Gaps = 23/400 (5%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGY----ERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           F+V + GCQMNV+DS R+  +  + GY    E      D DLIV+NTC +RE AAE++Y 
Sbjct: 31  FYVHTLGCQMNVHDSERISGVLEADGYVPATEEQYLDHDVDLIVMNTCAVRENAAERMYG 90

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +G    L   R ++  +L + V GC+AQ + E+I +++P V+ V G +    LP+LL++
Sbjct: 91  TIG----LWAERKRQRPNLQIAVGGCMAQLDREKIAKKAPWVDAVFGTKNIGSLPQLLDQ 146

Query: 143 ARF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           AR  G   V     +     +L       +R   V++++ I  GC+  CTFC+VP TRG 
Sbjct: 147 ARIEGHAQVKVKEELNYFPSQLPT-----DRASKVSSWVAISVGCNNTCTFCIVPTTRGK 201

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E  R    ++ E R+ +D G  E+TLLGQNVN++ G G+ G++  FS LL +  EI+GL 
Sbjct: 202 EHDRRPGDILAEIRQCVDEGAKEVTLLGQNVNSF-GYGI-GDRFAFSKLLRACGEIEGLE 259

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+T+ HP   +D +I A  +   +M  LH P+QSGSDRIL++M R + + ++  I+ +
Sbjct: 260 RVRFTSPHPAAFTDDVIAAMAETPNVMHQLHFPLQSGSDRILRAMRRSYRSAKFLDILRK 319

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           IR   PD  IS+D IVGFPGET++DF+ T+ +V++  +A AF+F YSPR GTP + M EQ
Sbjct: 320 IREAMPDAQISTDIIVGFPGETEEDFQETLRVVEEARFASAFTFIYSPRPGTPAAEM-EQ 378

Query: 382 VDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLI 418
           V  +V   + ERL+ LQ+++ E+ +   +   G+ +EV++
Sbjct: 379 VPHDVVQDRFERLVALQERITEENLKTFE---GRDVEVMV 415


>gi|302338928|ref|YP_003804134.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Spirochaeta smaragdinae
           DSM 11293]
 gi|301636113|gb|ADK81540.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Spirochaeta smaragdinae
           DSM 11293]
          Length = 440

 Score =  283 bits (725), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 156/448 (34%), Positives = 258/448 (57%), Gaps = 20/448 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           RFF+++YGCQMN+ +S  M     + G+      ++AD+++LNTC +R+ A ++++  +G
Sbjct: 4   RFFLETYGCQMNIAESNAMTLQLEALGWSAAERPEEADIVLLNTCAVRQTAEDRIWGRIG 63

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL---ER 142
             + LK SR     D  ++V GC+A+  GEEI++ S  V+ V+G     +L E+      
Sbjct: 64  YYKFLKESR-----DFTLIVTGCMAERLGEEIIKESKAVDYVLGTFQKRKLSEIACGHGE 118

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
                +  D   S   +FE   +  G +       AFL I  GC+ FC++C+VPY RG E
Sbjct: 119 THAPVKADDLSVSPHFQFEPYHLAKGAFK------AFLPIMHGCNNFCSYCIVPYVRGRE 172

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           ISRS   +  E  +L + GV EITLLGQNVN++       +   F DLL  ++ +   +R
Sbjct: 173 ISRSPEDIFREIERLEEKGVREITLLGQNVNSYNWN----DTLRFPDLLAKIASMTDSIR 228

Query: 263 -LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
            +R+ +SHP+D+   LI+   + + +  ++HLPVQ GS+ +L+ MNR++T   Y  +++ 
Sbjct: 229 WIRFMSSHPKDIPQELIRVIAEHETVCNHIHLPVQHGSNSVLRRMNRKYTREHYFDLVEM 288

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +RSV P +++S+D ++GFPGE+++DF  T+DLV ++G+  AF++ Y+PR GT   +M EQ
Sbjct: 289 MRSVIPGLSLSTDLMIGFPGESEEDFELTLDLVRQVGFDDAFTYYYNPREGTAAYDMAEQ 348

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVL 440
           V   VK +RL  L +  RE   +   A +G    VL+E+  K++ G+L+ R+   + V  
Sbjct: 349 VPHEVKLDRLKTLIELQREISFARRKARIGDSERVLVEQRAKKREGELLARTNRNEMVAF 408

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 IG  + V +  +  +T  GE+V
Sbjct: 409 PGGEGLIGSFVPVVLKTLHGNTFRGEVV 436


>gi|229890675|sp|Q0S1P3|MIAB_RHOSR RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
          Length = 505

 Score =  283 bits (725), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 155/428 (36%), Positives = 251/428 (58%), Gaps = 27/428 (6%)

Query: 18  VDQCIVPQRFF-VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA 76
           +DQ   P R + V++YGCQMNV+DS R+  +    GY +  +    DL+V NTC +RE A
Sbjct: 4   IDQ--TPHRSYEVRTYGCQMNVHDSERLSGLLEDAGYTKAAAGQAPDLVVFNTCAVRENA 61

Query: 77  AEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL 136
             K+Y  L  +   K    +   D+ + V GC+AQ + + +++++P V+VV G      L
Sbjct: 62  DNKLYGNLSHLAPAK----ERNPDMQIAVGGCLAQKDRDVVVKKAPWVDVVFGTHNIGSL 117

Query: 137 PELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
           P LL+RAR  +R  V+   ++E     L        R+     +++I  GC+  CTFC+V
Sbjct: 118 PALLDRARHNQRAEVEILEALEAFPSTLPA-----KRESAYAGWVSISVGCNNTCTFCIV 172

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE----KCTFSDLL 251
           P  RG E+ R    ++ E + L++ GV E+TLLGQNVNA+     D +    +  F+ LL
Sbjct: 173 PALRGKEVDRRPGDILAEVQALVNEGVVEVTLLGQNVNAYGVSFADPDQPRDRGAFAALL 232

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
            +  +I GL R+R+T+ HP + +D +I+A  +   + P LH+P+QSGSDR+LK+M R + 
Sbjct: 233 RACGQIDGLERVRFTSPHPAEFTDDVIEAMAETPNVCPQLHMPLQSGSDRVLKAMRRSYR 292

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
              +  IID++R+  P  AI++D IVGFPGET++DF+ T+D+V +  +  A++F+YS R 
Sbjct: 293 KSRFLGIIDKVRTAMPHAAITTDIIVGFPGETEEDFQDTLDVVRQARFTSAYTFQYSKRP 352

Query: 372 GTPGSNMLEQVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIE----KHGKE 424
           GTP + M EQ+ + V   + ERL+ LQ+++  ++   N   VG  +E+L+     +   E
Sbjct: 353 GTPAAEMDEQLPKAVVQERYERLIALQEQITLEE---NQKLVGAEVELLVAAGEGRKNAE 409

Query: 425 KGKLVGRS 432
             ++ GR+
Sbjct: 410 TARMSGRA 417


>gi|149917237|ref|ZP_01905736.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Plesiocystis pacifica
           SIR-1]
 gi|149821844|gb|EDM81238.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Plesiocystis pacifica
           SIR-1]
          Length = 486

 Score =  283 bits (725), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 166/458 (36%), Positives = 267/458 (58%), Gaps = 29/458 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R +++++GCQMN  D+  +       G+ RV S  +ADL+++NTC +REKA ++VY   G
Sbjct: 37  RVYMETFGCQMNEADTALVLGRLRQDGWVRVTSPAEADLVLVNTCAVREKAEDRVY---G 93

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R   L + R     DL++ + GC+A+   +++  R+P + +V GP +Y  +  L  +A  
Sbjct: 94  RTTQLLDHR-NRNPDLVIGITGCMAEHLRDKLETRAPHIQLVAGPDSYRNIAALARKAIT 152

Query: 146 GKRVVDTDYSVEDKFERLSIV---------DGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
           G+R VD      + +E L  V         +   +R  GV+ ++TIQ GCDKFCTFCVVP
Sbjct: 153 GERAVDVHLDKAEVYEGLDPVIRSPGDDGSEAATSRDDGVSGYVTIQRGCDKFCTFCVVP 212

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVN--AWRGKGLDGEKCTFSDLLYSL 254
           +TRG E      +V+ +AR+L + G  E+TLLGQ VN  AW       E  +F++LL ++
Sbjct: 213 FTRGRERGVPPREVLRQARRLAEAGYRELTLLGQTVNSYAW-------EDVSFAELLRAV 265

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
           + ++G+ R+R+T+ +P D SD LI+       + PY+H+PVQ+G+D +L+ M R +T  +
Sbjct: 266 AAVEGIERIRFTSPYPVDFSDELIEVLATEPKVCPYVHMPVQAGADVVLERMRRGYTLAD 325

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
           YR+++ ++R+  P IAIS+D +VGF GET+ D   T+ L++++ +  AF F YS R  T 
Sbjct: 326 YRELVRKLRAAVPHIAISTDIMVGFCGETEADHAETLALMEEVQFDFAFMFAYSDREITY 385

Query: 375 GS-NMLEQVDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG 430
            S  +++ V +  K  RL   + LQ+K    +++   A VGQ   VL+    K   KL+G
Sbjct: 386 ASKKLVDDVPQETKLRRLREVIELQEKHTRARLA---ARVGQRDRVLVVNTSKRGDKLLG 442

Query: 431 RSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           R+P  Q V+L       G+ + V IT     +L+GEL+
Sbjct: 443 RTPTFQKVLLPLGCAAPGEFVDVTITGTTGHSLFGELL 480


>gi|148269423|ref|YP_001243883.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Thermotoga
           petrophila RKU-1]
 gi|170288080|ref|YP_001738318.1| RNA modification protein [Thermotoga sp. RQ2]
 gi|229891014|sp|A5IJD4|MIAB_THEP1 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|229891017|sp|B1L8F3|MIAB_THESQ RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|147734967|gb|ABQ46307.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Thermotoga petrophila
           RKU-1]
 gi|170175583|gb|ACB08635.1| RNA modification enzyme, MiaB family [Thermotoga sp. RQ2]
          Length = 443

 Score =  283 bits (725), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 170/448 (37%), Positives = 263/448 (58%), Gaps = 24/448 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           RF++K++GCQMN  DS  M  +   +G+   ++ ++AD++++NTC +R K+ EK YS LG
Sbjct: 2   RFYIKTFGCQMNENDSETMAGLLMKEGFTPASAPEEADVVIINTCAVRRKSEEKAYSELG 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           ++  +K  R      L+V VAGCVA+ E E++L R    + V+G +   ++ E ++RA  
Sbjct: 62  QMLKIKRKR-----KLVVGVAGCVAEKEREKLLERG--ADFVLGTRAVLKVTEAVKRALQ 114

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G++V   +  +++    L  +     R     A++TI  GCD+FCT+C+VPYTRG E SR
Sbjct: 115 GEKVALFEDHLDEYTHELPRI-----RSSKHHAWVTIIFGCDRFCTYCIVPYTRGREKSR 169

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL-DGEKCTFSDLLYSLSEIKGLVRLR 264
            +  +++E R+L   G  E+T LGQNV+A+ GK L DG   + + LL   S+I+G+ R+ 
Sbjct: 170 PMEDILEEVRELAKQGYREVTFLGQNVDAY-GKDLKDG--SSLAKLLEEASKIEGIERIW 226

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           + TS+P D SD LI+       +   +HLPVQSGS+RILK MNR +T  EY  +++RIRS
Sbjct: 227 FLTSYPTDFSDELIEVIARNPKVAKSVHLPVQSGSNRILKLMNRSYTKEEYLALLERIRS 286

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT-PGSNMLEQVD 383
             PD+AISSD IVGFP ET++DF  T+DLV+K  + +     YSPR GT    +  ++V 
Sbjct: 287 KVPDVAISSDIIVGFPTETEEDFMETIDLVEKAQFERLNLAIYSPRKGTVAWKHYKDEVP 346

Query: 384 ENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440
              K  R   L+ LQK++  +    N+   G+ + V++E   K  G   GR    + +  
Sbjct: 347 YEEKVRRMQFLMNLQKRINRK---LNERYKGKTVRVIVEAQAK-NGLFYGRDIRNKIIAF 402

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
             +   IG    V+I  +    LYG++V
Sbjct: 403 EGEEWMIGRFADVKIEKITAGPLYGKVV 430


>gi|289706447|ref|ZP_06502805.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Micrococcus luteus SK58]
 gi|289556942|gb|EFD50275.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Micrococcus luteus SK58]
          Length = 513

 Score =  283 bits (725), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 161/446 (36%), Positives = 257/446 (57%), Gaps = 30/446 (6%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           + V+++GCQMNV+DS R+  +  S GY        ADL+V NTC +RE A  ++Y  LG 
Sbjct: 26  YEVRTFGCQMNVHDSERISGLLESTGYAPAAEDAQADLVVFNTCAVRENADNRLYGNLGN 85

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           +R +K++       + + V GC+AQ +   I R++P V+VV G      LP LLER+R  
Sbjct: 86  LRAVKDAHP----GMQIAVGGCLAQKDQAAIQRKAPWVDVVFGTHNIGSLPVLLERSRH- 140

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVT--AFLTIQEGCDKFCTFCVVPYTRGIEIS 204
               + +  +E   E L +       KR  T   +++I  GC+  CTFC+VP  RG E  
Sbjct: 141 ----NAEAEIE-ILESLEVFPSTLPTKRDSTHSGWVSISVGCNNTCTFCIVPSLRGKEKD 195

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRL 263
           R   +++ E + L+D G  E+TLLGQNVN +   G++ G++  F+ LL +  +I+GL R+
Sbjct: 196 RRPGEILAEVQALVDAGAVEVTLLGQNVNTY---GVEFGDRGAFAKLLRACGQIEGLERV 252

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+T+ HP   +D +I A  +   +MP LH+P+QSGSD +LK+M R + +  +  I++++R
Sbjct: 253 RFTSPHPAAFTDDVIDAMAETPNVMPQLHMPLQSGSDTVLKAMRRSYRSKRFLGILEKVR 312

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              P  AI++D IVGFPGET++DF+ TM +V+   ++ AF+F+YS R GTP   M +QV 
Sbjct: 313 ERIPHAAITTDIIVGFPGETEEDFQDTMRVVEASRFSSAFTFQYSIRPGTPAGEMADQVP 372

Query: 384 ENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK----HGKEKGKLVGRSPWLQ 436
           + V   + ERL+ LQ ++  ++++     VG   E+L+         E+G+L GR+   +
Sbjct: 373 KAVVQERYERLVALQDRISAEEMA---TLVGTRQELLVTADSGTKAAERGRLSGRARDNR 429

Query: 437 ----SVVLNSKNHNIGDIIKVRITDV 458
               SV   +     GD + V +T+ 
Sbjct: 430 LVHFSVPAGAPTPRPGDFVSVTVTEA 455


>gi|224283403|ref|ZP_03646725.1| hypothetical protein BbifN4_06194 [Bifidobacterium bifidum NCIMB
           41171]
          Length = 479

 Score =  283 bits (725), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 157/403 (38%), Positives = 247/403 (61%), Gaps = 29/403 (7%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGY----ERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           F+V + GCQMNV+DS R+  +    GY    E   +  D DLI++NTC +RE AAE++Y 
Sbjct: 26  FYVHTLGCQMNVHDSERIAGVLEDDGYIPATEEQAADKDVDLIIMNTCAVRENAAERMYG 85

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +G   +LK +      ++ + + GC+AQ + + I +++P V+ V G +    LP LL++
Sbjct: 86  TIGLWADLKRTH----PNMQIAIGGCMAQLDRKRIAQKAPWVDAVFGTKNIGSLPRLLDQ 141

Query: 143 ARFGKRVVDTDYSVEDKFE----RLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
           AR           V DK +    +L +      R   V+++++I  GC+  CTFC+VP T
Sbjct: 142 ARMAGTC---QVEVADKLDYFPSQLPVA-----RASKVSSWVSISIGCNNTCTFCIVPTT 193

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258
           RG E  R    ++ E R+ +D G  E+TLLGQNVN++ G G+ G++  FS LL +  +I+
Sbjct: 194 RGKEHDRRPGDILAEIRRCVDEGAKEVTLLGQNVNSF-GYGI-GDRYAFSKLLRACGDIE 251

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           GL R+R+T+ HP   +D +I A  +   +M  LH+P+QSGSD+IL++M R + + ++  I
Sbjct: 252 GLERVRFTSPHPAAFTDDVIAAMAETPNVMHQLHMPLQSGSDKILRAMRRSYRSAKFLDI 311

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           + ++R   PD  IS+D IVGFPGETD+DF ATMD+V +  +  AF+F+YSPR GTP + M
Sbjct: 312 LRKVREAMPDAQISTDIIVGFPGETDEDFEATMDVVRQARFQSAFTFEYSPRPGTPAAEM 371

Query: 379 LEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLI 418
            EQV   V  E   RL+ LQ+++ E++++  +   G+ +EV+I
Sbjct: 372 -EQVPHEVVQERFDRLVKLQEQITEEELAKFE---GRDVEVMI 410


>gi|307720461|ref|YP_003891601.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Sulfurimonas autotrophica
           DSM 16294]
 gi|306978554|gb|ADN08589.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Sulfurimonas autotrophica
           DSM 16294]
          Length = 434

 Score =  283 bits (724), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 164/450 (36%), Positives = 254/450 (56%), Gaps = 19/450 (4%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRM-EDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++ F+++ GC MN  DS  M   +   +GYE   +++DADLI++NTC +RE+   K++
Sbjct: 1   MSKKLFIETLGCAMNSRDSEHMIAQLREKEGYETTQNLEDADLILINTCSVRERPVHKLF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S LG  +  K    K G      V GC A   GEEI++R+P VN V+G +   ++ E+L 
Sbjct: 61  SELGGFKKRKKPSAKIG------VCGCTASHLGEEIIKRAPYVNFVLGARNVSKIGEVLH 114

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           + +  +  ++ D S E  F+          R     A++ I  GCDK CT+C+VP TRG 
Sbjct: 115 KDKAVEIDINYDES-EFAFDDF--------RTSSYKAYINISIGCDKQCTYCIVPKTRGD 165

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW--RGKGLDGEKCTFSDLLYSLSEIKG 259
           EIS     +++EA++ +DNG  EI LLGQNVN +  R    + EK  F++LL  LS+I+G
Sbjct: 166 EISIPDDLIINEAKRAVDNGAKEIFLLGQNVNNYGRRFSSSEHEKVNFTELLRRLSKIEG 225

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           L R+R+T+ HP  M D  I+       +   +H+P+QSGS ++LK M R +T   +   +
Sbjct: 226 LERIRFTSPHPFHMDDEFIEEFAKNPKICKSMHMPLQSGSSKVLKEMKRGYTKEWFLNRV 285

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            ++RSV PD++IS+D IV FPGE+D+DF  T+D++ ++ + Q FSFKYSPR  T   +  
Sbjct: 286 QKLRSVCPDVSISTDIIVAFPGESDEDFADTIDVMKQVKFDQIFSFKYSPRPETEAEHFT 345

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV 439
             VDE+V ++RL  LQ    E     N   +G+   V  E   K+   + GRS     + 
Sbjct: 346 NVVDEDVASDRLAYLQSLHNELLDEINTKYLGETFRVYFENLNKDNF-VSGRSDNNLVIK 404

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELVV 469
           +      +G+   V+IT +  + L GE+V 
Sbjct: 405 VKGSEELLGEFRDVKITSIGRTILTGEIVA 434


>gi|257466304|ref|ZP_05630615.1| MIAB protein [Fusobacterium gonidiaformans ATCC 25563]
 gi|315917461|ref|ZP_07913701.1| tRNA-methylthiotransferase MiaB protein [Fusobacterium
           gonidiaformans ATCC 25563]
 gi|313691336|gb|EFS28171.1| tRNA-methylthiotransferase MiaB protein [Fusobacterium
           gonidiaformans ATCC 25563]
          Length = 435

 Score =  283 bits (724), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 167/443 (37%), Positives = 255/443 (57%), Gaps = 16/443 (3%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V +YGCQMNV +S +M+ +F + GYE    + ++D I LNTC +RE AA ++Y  LG + 
Sbjct: 6   VITYGCQMNVNESAKMKKIFENLGYEITEDIRESDAIFLNTCTVREGAATQIYGKLGELM 65

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE--RARFG 146
            +K  R       ++ V GC AQ +G+E+L++ P++++V+G Q   RLP+ +E    +  
Sbjct: 66  QVKADR-----GSIIGVTGCFAQEQGKELLKKFPVIDIVMGNQNIGRLPQAIENIENQTE 120

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           K VV TD+  ED        D G ++    TA + I  GC+ FCTFC+VPY RG E S  
Sbjct: 121 KHVVFTDH--EDDLPPRLDADFGSDQ----TASIAISYGCNNFCTFCIVPYVRGRERSVP 174

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
           L ++V +  + +  G  EI LLGQNVN++     +G+  TF+ LL  + +++G   +R+ 
Sbjct: 175 LEEIVRDVDQYVKKGAKEIMLLGQNVNSYGHDFKNGD--TFAKLLTEICKVEGDFIVRFV 232

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
           + HPRD +D +I+     D +   LHLP+QSGS +ILK MNR +T  +Y  +  +I+   
Sbjct: 233 SPHPRDFTDDVIEVIAKEDKIAKCLHLPLQSGSSQILKRMNRGYTKEQYLALAHKIQDKI 292

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
             +A+++D IVGFPGET++DF  T+++V +I Y  AF F YS R GT  + M EQ+ E++
Sbjct: 293 SGVALTTDIIVGFPGETEEDFLDTLEIVREINYDNAFMFMYSIRQGTRAATMQEQIPEDI 352

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRSPWLQSVVLNSKNH 445
           K ERL  L           +    G+ + VL+E   K+ K  L GR+   + V+      
Sbjct: 353 KKERLQRLMDVQARCSYKESQKYQGKTVRVLVEGESKKNKEVLSGRTSTNKIVLFQGPIS 412

Query: 446 NIGDIIKVRITDVKISTLYGELV 468
             G  + V I + K  TLYG+LV
Sbjct: 413 LKGSFVDVEIYECKTWTLYGKLV 435


>gi|318060989|ref|ZP_07979710.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Streptomyces
           sp. SA3_actG]
 gi|318077279|ref|ZP_07984611.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Streptomyces
           sp. SA3_actF]
          Length = 484

 Score =  283 bits (724), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 169/445 (37%), Positives = 255/445 (57%), Gaps = 29/445 (6%)

Query: 36  MNVYDSLRMEDMFFSQGYERVNSMDD---ADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92
           MNV+DS R+  +    GY R     +   AD++V NTC +RE A  ++Y  LGR+   K 
Sbjct: 1   MNVHDSERLAGLLEGAGYVRAPEGAEDGGADVVVFNTCAVRENADNRLYGNLGRLAPKKT 60

Query: 93  SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV-VD 151
            R      + + V GC+AQ + + I+ R+P V+VV G     +LP LLERAR  +   V+
Sbjct: 61  ERP----GMQIAVGGCLAQKDRQTIVDRAPWVDVVFGTHNIGKLPVLLERARVQEEAQVE 116

Query: 152 TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVV 211
              S+E     L        R+    A++++  GC+  CTFC+VP  RG E  R    ++
Sbjct: 117 IAESLEAFPSTLPT-----RRESAYAAWVSVSVGCNNTCTFCIVPALRGKEKDRRPGDIL 171

Query: 212 DEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270
            E   L+  GV EITLLGQNVNA+   G D G++  FS LL +   I+GL R+R+T+ HP
Sbjct: 172 AEVEALVAEGVSEITLLGQNVNAY---GSDIGDREAFSKLLRACGGIEGLERVRFTSPHP 228

Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330
           RD +D +I A  +   +MP LH+P+QSGSD +L++M R +    Y  II+++R+  PD A
Sbjct: 229 RDFTDDVIAAMAETPNVMPQLHMPLQSGSDTVLRAMRRSYRQDRYLGIIEKVRAAIPDAA 288

Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV---K 387
           IS+D IVGFPGET++DF  T+ +V +  +A AF+F+YS R GTP + M  Q+ + V   +
Sbjct: 289 ISTDIIVGFPGETEEDFEQTLHVVREARFAAAFTFQYSKRPGTPAAEMENQIPKEVVQKR 348

Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKG---KLVGRSPWLQSVVLNSK 443
            ERL+ LQ+++  ++   N   VG+ ++V++ E  G++ G   +L GR+P  + V     
Sbjct: 349 YERLVALQEEISWEE---NKKQVGRTLDVMVAEGEGRKDGATQRLSGRAPDNRLVHFTKP 405

Query: 444 NHNI--GDIIKVRITDVKISTLYGE 466
              +  GD++ V IT      L  E
Sbjct: 406 QEPVRPGDVVTVDITYAAPHHLLAE 430


>gi|307718683|ref|YP_003874215.1| hypothetical protein STHERM_c09960 [Spirochaeta thermophila DSM
           6192]
 gi|306532408|gb|ADN01942.1| hypothetical protein STHERM_c09960 [Spirochaeta thermophila DSM
           6192]
          Length = 448

 Score =  283 bits (724), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 163/448 (36%), Positives = 265/448 (59%), Gaps = 17/448 (3%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           ++V++YGCQMN  +S  +       G+ R ++ D+AD++VLNTC +R+ A E++   LG 
Sbjct: 4   YWVETYGCQMNKAESEALIRDLEEAGWGRASAPDEADVVVLNTCAVRQTAEERIAGRLGY 63

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGP---QTYYRLPELLERA 143
            R LK       G  ++V+ GC+A+   EE+L   P V+VVVG    +++ RL  L ERA
Sbjct: 64  YRYLKKH-----GRFVLVLMGCMAERMKEEVLEAFPHVDVVVGTFQKKSFVRL--LRERA 116

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
                +     + ED++    I   G     G  AF+ I  GC+ FC++C+VPY RG E+
Sbjct: 117 EDLTLLQQLLLTEEDEYSFEKIHHSG----PGFKAFVPIMHGCNNFCSYCIVPYVRGREV 172

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKGLVR 262
           SR  S++ +E   L++ GV EITLLGQNVN++R    +G++  F+ LL  +      L  
Sbjct: 173 SRHPSEIFEEIEALLEKGVKEITLLGQNVNSYRFT-WEGKEVRFAGLLREIVHRFPELPW 231

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LR+ TSHP+D+SD LI+       +  +LHLPVQ GS+RIL +MNRR+T   Y  +++RI
Sbjct: 232 LRFLTSHPKDLSDELIEVMSASPSICKHLHLPVQHGSNRILGAMNRRYTREHYLNLVERI 291

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+  P IA+++D +VGFPGET++D   T+DL+ ++ +A A+++ Y+PR GT      + +
Sbjct: 292 RTAMPGIALTTDILVGFPGETEEDLELTLDLMRRVRFADAYTYYYNPRKGTRAYEWGDPI 351

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSVVLN 441
              VK ERL  + +  RE  + +    +G++++VL+E+   K + +++ R+   + VV  
Sbjct: 352 PLEVKKERLDRVIRLQRELSLEWKQMRIGRMVDVLVEEVSRKREDEVLARTEQDEMVVFP 411

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELVV 469
           +    IG   +V++  ++ +T   E VV
Sbjct: 412 ASPERIGRFARVQLVSLEGNTFRAEEVV 439


>gi|33866174|ref|NP_897733.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Synechococcus
           sp. WH 8102]
 gi|81574233|sp|Q7U5R0|MIAB_SYNPX RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|33639149|emb|CAE08155.1| 2-methylthioadenine synthetase [Synechococcus sp. WH 8102]
          Length = 460

 Score =  283 bits (724), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 175/452 (38%), Positives = 263/452 (58%), Gaps = 25/452 (5%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           +++ ++GCQMN  DS RM  +  S GY   N+  +ADL++ NTC IR+ A +KVYS+LGR
Sbjct: 12  YWITTFGCQMNKADSERMAGILESMGYRAANAELEADLVLYNTCTIRDNAEQKVYSYLGR 71

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
               +  R +   +L ++VAGCVAQ EGE +LRR P +++V+GPQ   RL  LL R   G
Sbjct: 72  ----QAQRKRLDPNLTLIVAGCVAQQEGESLLRRVPELDLVMGPQHANRLEVLLNRVDSG 127

Query: 147 KRVVDT-DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           ++VV T D+ +    E ++       R   +  ++ +  GC++ CT+CVVP  RG E SR
Sbjct: 128 QQVVATEDHHI---LEDITTA----RRDSSICGWVNVIYGCNERCTYCVVPSVRGKEQSR 180

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG------EKCTFSDLLYSLSEIKG 259
               +  E   L   G  EITLLGQN++A+ G+ L G       + T +DLL+ + ++ G
Sbjct: 181 LPEAIRLEMEGLAAQGYKEITLLGQNIDAY-GRDLPGITPEGRRQHTLTDLLHQVHDVSG 239

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           + R+R+ TSHPR  ++ LI A  DL  L  + H+P QSG + +L++M R +T   YR+II
Sbjct: 240 IKRIRFATSHPRYFTERLIDACADLPKLCEHFHIPFQSGDNDVLRAMARGYTVERYRRII 299

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
           DRIR   PD ++S+D IV FPGETD  ++ T+DL+++IG+ Q  +  YSPR  TP +   
Sbjct: 300 DRIRERMPDASLSADVIVAFPGETDLQYQRTLDLIEEIGFDQVNTAAYSPRPNTPAATWD 359

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRS-----P 433
            Q+ E VK  RL  +   +       N    G+  EVL E  + K+  +L+GR+      
Sbjct: 360 NQLPEEVKVIRLQTINALVERCARERNARYAGRTEEVLAEGINPKDPSQLMGRTRTNRLT 419

Query: 434 WLQSVVLNSKNHNIGDIIKVRITDVKISTLYG 465
           + Q+   +   HN GD++ VRI  V+  +L G
Sbjct: 420 FFQAAGPDGHQHNPGDLVNVRIDAVRSFSLSG 451


>gi|206895928|ref|YP_002247164.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Coprothermobacter
           proteolyticus DSM 5265]
 gi|229890499|sp|B5Y8R7|MIAB_COPPD RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|206738545|gb|ACI17623.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Coprothermobacter
           proteolyticus DSM 5265]
          Length = 426

 Score =  283 bits (724), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 170/449 (37%), Positives = 254/449 (56%), Gaps = 35/449 (7%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           ++++ +YGCQMN  DS  +  +  S G+E   ++ D+DL+V+NTC +R  A E+    +G
Sbjct: 2   KYYIFTYGCQMNKNDSEMVSGILKSSGWEEAKNVVDSDLVVINTCSVRLHAEERA---IG 58

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            I  LK    K      VVV GC+++  G EI+ R P V  V+GP     + ++L   R 
Sbjct: 59  TISALKKLGKK------VVVMGCMSEVRGNEIMSRFPHVQAVLGPSYEAHILDVLNGER- 111

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
             R++  D  V+  FE+ S      NRK   + +++I +GCD FCT+C+VP+TRG   SR
Sbjct: 112 --RILVGDEKVD--FEKYS----SANRKEKHSVYVSIMKGCDDFCTYCIVPFTRGRVQSR 163

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
               +++E R  +DNG  EITLLGQNVN + GK L G    F  L+  ++ I G+ R+R+
Sbjct: 164 DPESILEEVRVCVDNGAVEITLLGQNVNDY-GKDLSG--WDFVSLVERVATIDGVRRIRF 220

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
            + HP +     I    +L  + PY HLP+QSG D IL+ MNR++T  E+ +++  IR  
Sbjct: 221 MSPHPANFKKDDITRLANLPQVAPYYHLPLQSGDDEILRRMNRKYTTGEFAELVGFIRES 280

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P++AI +D IVGFPGE+D+ F+ T   ++K+ +   +   YSPR   PG+    Q    
Sbjct: 281 VPNVAIGTDLIVGFPGESDEHFQNTFKFLEKMQFDVVYMAIYSPR---PGTAAARQETSF 337

Query: 386 VKAE-------RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSV 438
           V AE        LL LQ+K+     S N   VG + EVLI++  K  GK +GR+P  ++V
Sbjct: 338 VPAEVAKARYDELLRLQEKI---SYSINQRYVGTLQEVLIDREDKTTGKFIGRTPTNKTV 394

Query: 439 VLNSKNH-NIGDIIKVRITDVKISTLYGE 466
           V  S  H + G+ + VRI + K   LYGE
Sbjct: 395 VFTSIRHVSPGEFVDVRINEAKSWVLYGE 423


>gi|291461037|ref|ZP_06026579.2| tRNA-I(6)A37 thiotransferase enzyme MiaB [Fusobacterium
           periodonticum ATCC 33693]
 gi|291379315|gb|EFE86833.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Fusobacterium
           periodonticum ATCC 33693]
          Length = 423

 Score =  283 bits (724), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 159/436 (36%), Positives = 259/436 (59%), Gaps = 16/436 (3%)

Query: 36  MNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRI 95
           MNV +S +++ +F + GY+     DDAD + LNTC +RE AA +++  LG ++ LK    
Sbjct: 1   MNVNESAKIKKIFQNLGYDVTEETDDADAVFLNTCTVREGAATQIFGKLGELKTLK---- 56

Query: 96  KEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYS 155
            E    ++ V GC AQ +GEE++R+ PI+++V+G Q   R+P+ +E+    +   +    
Sbjct: 57  -EKKGTIIGVTGCFAQEQGEELVRKFPIIDIVMGNQNIGRIPQAIEKIENNESAHEVYTD 115

Query: 156 VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEAR 215
            ED  E    +D  +   +  TA ++I  GC+ FCTFC+VPY RG E S  L ++V +  
Sbjct: 116 NED--ELPPRLDAEFASDQ--TASISITYGCNNFCTFCIVPYVRGRERSVPLEEIVKDVE 171

Query: 216 KLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSD 275
           + +  G  EI LLGQNVN++     +G+   F+ LL  + +++G   +R+ + HPRD +D
Sbjct: 172 QYVSKGAKEIVLLGQNVNSYGKDFKNGD--NFAKLLEEICKVEGDYIVRFVSPHPRDFTD 229

Query: 276 CLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDF 335
            +I      D +   LHLP+QSGS ++L+ M R +T  +Y  ++D+I+S  PD+A+++D 
Sbjct: 230 DVIDVIAKNDKISKCLHLPLQSGSSQVLRKMRRGYTKEKYLALVDKIKSKIPDVALTADI 289

Query: 336 IVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQ 395
           IVGFPGET++DF  T+D+V+K+ +  ++ F YS R GT  + M  Q+DE+VK ERL  L 
Sbjct: 290 IVGFPGETEEDFLDTVDVVEKVSFDNSYMFMYSIRKGTKAATMDNQIDESVKKERLQRLM 349

Query: 396 KKLREQQVSFNDAC--VGQIIEVLIEKHGKE-KGKLVGRSPWLQSVVLNSKNHNIGDIIK 452
           +   + + SFN++     +I+ VL+E   K+ K  L GR+   + V+        G  + 
Sbjct: 350 E--VQNKCSFNESSKYKDKIVRVLVEGPSKKNKEVLSGRTSTNKIVLFKGDMALKGQFVD 407

Query: 453 VRITDVKISTLYGELV 468
           V+I + K  TLYG++V
Sbjct: 408 VKINECKTWTLYGDIV 423


>gi|303328189|ref|ZP_07358627.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Desulfovibrio sp.
           3_1_syn3]
 gi|302861519|gb|EFL84455.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Desulfovibrio sp.
           3_1_syn3]
          Length = 449

 Score =  283 bits (724), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 169/450 (37%), Positives = 256/450 (56%), Gaps = 24/450 (5%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + F + ++GCQMNV+DSL +     ++G+     +++A ++V+NTC +REK  +KV S L
Sbjct: 4   KSFHIITFGCQMNVHDSLWLARALTARGFTEA-PLEEAGVVVVNTCSVREKPEQKVMSAL 62

Query: 85  GRIRNLKNSRIKEGGD--LLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
           GRIR +       GG+  +LV VAGCVAQ  G     R   V +V G       P  +ER
Sbjct: 63  GRIRQVT------GGNSGVLVAVAGCVAQQLGTAFFERESQVRLVAGSDGISGAPAAIER 116

Query: 143 --ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
             A    R+   D++     ER    DG      G  A++ I +GCD FC +C+VP+TRG
Sbjct: 117 LLAEPDLRLSLLDFT-SHYVEREPGADG----PSGPVAYVNIMQGCDNFCAYCIVPFTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            + SR+   ++DE R  +D G  EITLLGQNVNA+ G    G+  +F+ LL  ++ + GL
Sbjct: 172 RQKSRATPAILDECRTRLDQGAREITLLGQNVNAF-GHDKSGDGVSFAQLLAQVAALPGL 230

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            RLR+ T HP+DM    + A  +L  L P LHLP+Q+GSD +L  M RR+    + +++D
Sbjct: 231 ERLRFVTPHPKDMGLEDVAAFAELAPLCPRLHLPLQAGSDAVLTRMRRRYDRRGFLELVD 290

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
            +R  RPD+A+S+D IVGFPGE+++DF+AT+++++  G+  +FSF YS R G   +   +
Sbjct: 291 SLRKARPDLALSTDLIVGFPGESEEDFQATLEMMEACGFMSSFSFCYSDRPGARAALFPD 350

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-----KLVGRSPW- 434
           ++   V+ ERLL LQ         + DA V +   +LIE   ++ G        GR P+ 
Sbjct: 351 KIPPEVQQERLLRLQALQDRLSQRWLDARVDRETCLLIEGRSRKDGPDGESSWQGRDPYG 410

Query: 435 -LQSVVLNSKNHNIGDIIKVRITDVKISTL 463
            L  V L  +  + G ++ VRI + K  +L
Sbjct: 411 ALVHVALPPEADHTGRMVPVRIIEAKKHSL 440


>gi|224023497|ref|ZP_03641863.1| hypothetical protein BACCOPRO_00199 [Bacteroides coprophilus DSM
           18228]
 gi|224016719|gb|EEF74731.1| hypothetical protein BACCOPRO_00199 [Bacteroides coprophilus DSM
           18228]
          Length = 455

 Score =  283 bits (723), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 164/448 (36%), Positives = 260/448 (58%), Gaps = 21/448 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F+++YGCQMNV DS  +  +    GY    ++++AD + +NTC IR+ A +K+ + L
Sbjct: 19  KKLFIETYGCQMNVADSEVIASIMQMAGYSPCETLEEADAVFMNTCSIRDNAEQKILNRL 78

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
               +L+  R      L+V V GC+A+    +++     V++V GP  Y  LPEL+    
Sbjct: 79  EFFHSLRKKR----KHLIVGVLGCMAERVKNDLIEHHH-VDLVAGPDAYLTLPELISAVE 133

Query: 145 FGKRVVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            G++ ++ + S  + +  +  S + G +     ++ +++I  GC+ FC +C+VPYTRG E
Sbjct: 134 AGEKAINVELSTTETYRDVIPSRICGNH-----ISGYVSIMRGCNNFCHYCIVPYTRGRE 188

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR +  +++E   L   G  E+TLLGQNVN++R +  DG+  TF  LL  ++E    +R
Sbjct: 189 RSRDVESILNEVHDLERKGYKEVTLLGQNVNSYRFER-DGQTVTFPMLLRLVAESVPGMR 247

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP+DMSD  +    ++  +  ++HLPVQSGS RILK MNR++T   Y + ++ I
Sbjct: 248 IRFTTSHPKDMSDETLHVIAEVPNVCKHIHLPVQSGSSRILKLMNRKYTREWYLERVEAI 307

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML-EQ 381
           R + PD  +S+D   GF  ET++D + ++ L+ +  Y  AF FKYS R GT  S  L + 
Sbjct: 308 RRIIPDCGLSTDIFSGFHSETEEDHQMSLSLMRECAYDSAFMFKYSERPGTYASKHLPDD 367

Query: 382 VDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQS 437
           V E +K  RL   + LQ +L  +    N   VG+  EVL+E   K  K +L GR+   + 
Sbjct: 368 VPEEIKIRRLNEMIELQNQLSAES---NARDVGKTFEVLVEGVSKRSKDQLFGRTEQNKV 424

Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYG 465
           VV +   H IGD ++VRITD   +TL G
Sbjct: 425 VVFDRGTHRIGDFVQVRITDSSSATLKG 452


>gi|111023729|ref|YP_706701.1| hypothetical protein RHA1_ro06771 [Rhodococcus jostii RHA1]
 gi|110823259|gb|ABG98543.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
          Length = 552

 Score =  283 bits (723), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 155/428 (36%), Positives = 251/428 (58%), Gaps = 27/428 (6%)

Query: 18  VDQCIVPQRFF-VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA 76
           +DQ   P R + V++YGCQMNV+DS R+  +    GY +  +    DL+V NTC +RE A
Sbjct: 51  IDQ--TPHRSYEVRTYGCQMNVHDSERLSGLLEDAGYTKAAAGQAPDLVVFNTCAVRENA 108

Query: 77  AEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL 136
             K+Y  L  +   K    +   D+ + V GC+AQ + + +++++P V+VV G      L
Sbjct: 109 DNKLYGNLSHLAPAK----ERNPDMQIAVGGCLAQKDRDVVVKKAPWVDVVFGTHNIGSL 164

Query: 137 PELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
           P LL+RAR  +R  V+   ++E     L        R+     +++I  GC+  CTFC+V
Sbjct: 165 PALLDRARHNQRAEVEILEALEAFPSTLPA-----KRESAYAGWVSISVGCNNTCTFCIV 219

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE----KCTFSDLL 251
           P  RG E+ R    ++ E + L++ GV E+TLLGQNVNA+     D +    +  F+ LL
Sbjct: 220 PALRGKEVDRRPGDILAEVQALVNEGVVEVTLLGQNVNAYGVSFADPDQPRDRGAFAALL 279

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
            +  +I GL R+R+T+ HP + +D +I+A  +   + P LH+P+QSGSDR+LK+M R + 
Sbjct: 280 RACGQIDGLERVRFTSPHPAEFTDDVIEAMAETPNVCPQLHMPLQSGSDRVLKAMRRSYR 339

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
              +  IID++R+  P  AI++D IVGFPGET++DF+ T+D+V +  +  A++F+YS R 
Sbjct: 340 KSRFLGIIDKVRTAMPHAAITTDIIVGFPGETEEDFQDTLDVVRQARFTSAYTFQYSKRP 399

Query: 372 GTPGSNMLEQVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIE----KHGKE 424
           GTP + M EQ+ + V   + ERL+ LQ+++  ++   N   VG  +E+L+     +   E
Sbjct: 400 GTPAAEMDEQLPKAVVQERYERLIALQEQITLEE---NQKLVGAEVELLVAAGEGRKNAE 456

Query: 425 KGKLVGRS 432
             ++ GR+
Sbjct: 457 TARMSGRA 464


>gi|210633082|ref|ZP_03297649.1| hypothetical protein COLSTE_01557 [Collinsella stercoris DSM 13279]
 gi|210159236|gb|EEA90207.1| hypothetical protein COLSTE_01557 [Collinsella stercoris DSM 13279]
          Length = 453

 Score =  283 bits (723), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 163/452 (36%), Positives = 256/452 (56%), Gaps = 30/452 (6%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           +F++++GCQMN++DS R+  +  S G  +     DAD+++  TC +RE A  ++Y   G+
Sbjct: 12  YFIRTFGCQMNLHDSERVSGLLDSLGCLQALDPKDADIVIFMTCCVREAADTRLY---GQ 68

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
             + K+      G  +V V GC+AQ +GE +L     V+V+ G  +   + +LL  A   
Sbjct: 69  CSSCKSLPASPSGRRVVAVGGCIAQRDGEGLLTNLDNVDVIFGTHSIAHVGDLLADA--- 125

Query: 147 KRVVDTDYSVEDKFERLSIVDGG------YNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
                  ++  D+  R+  +D G      ++R+    A++ I  GC+ FC++C+VPY RG
Sbjct: 126 -------FADGDRHVRVEEIDSGAATEMPWHRETAYHAWVPIMTGCNNFCSYCIVPYVRG 178

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKG 259
            E SR + ++VDE   L+  GV  +TLLGQNVN++   G D G    F++LL  + E  G
Sbjct: 179 REKSRPMEEIVDEVTGLVRQGVRSVTLLGQNVNSY---GRDHGSAPRFAELLRRVGE-TG 234

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           + R+ +T+SHP+D+    I A  ++  +MP LHL VQSGS RILK MNR++T  +Y  ++
Sbjct: 235 VERIYFTSSHPKDLLPETIDAIAEVPAVMPQLHLAVQSGSSRILKLMNRKYTREQYLDLV 294

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
           DR+R   PDIA+++D IVGFPGET++DF  T+ LVD+  +AQAF+F YS R GTP + + 
Sbjct: 295 DRVRDRIPDIALTTDIIVGFPGETEEDFEQTVTLVDEAKFAQAFTFIYSKRAGTPAAEID 354

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSV 438
           +    +V  +R   L + +      +N   +G  + +LIE   K+    L G+SPW Q+V
Sbjct: 355 DPTPRSVIQQRFDRLVRHVETTAFDYNQRFLGTTVPMLIEGTSKKNDAVLQGKSPWNQTV 414

Query: 439 VLN-----SKNHNIGDIIKVRITDVKISTLYG 465
                        IG I+ VR+   +   L G
Sbjct: 415 HCPVPEGMDARQLIGKILDVRVDAARTWYLSG 446


>gi|310287756|ref|YP_003939014.1| RNA modification enzyme, MiaB family [Bifidobacterium bifidum S17]
 gi|309251692|gb|ADO53440.1| RNA modification enzyme, MiaB family [Bifidobacterium bifidum S17]
          Length = 479

 Score =  283 bits (723), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 157/403 (38%), Positives = 247/403 (61%), Gaps = 29/403 (7%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGY----ERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           F+V + GCQMNV+DS R+  +    GY    E   +  D DLI++NTC +RE AAE++Y 
Sbjct: 26  FYVHTLGCQMNVHDSERIAGVLEDDGYIPATEEQAADKDVDLIIMNTCAVRENAAERMYG 85

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +G   +LK +      ++ + + GC+AQ + + I +++P V+ V G +    LP LL++
Sbjct: 86  TIGLWADLKRTH----PNMQIAIGGCMAQLDRKRIAQKAPWVDAVFGTKNIGSLPRLLDQ 141

Query: 143 ARFGKRVVDTDYSVEDKFE----RLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
           AR           V DK +    +L +      R   V+++++I  GC+  CTFC+VP T
Sbjct: 142 ARMAGTC---QVEVADKLDYFPSQLPVA-----RASKVSSWVSISIGCNNTCTFCIVPTT 193

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258
           RG E  R    ++ E R+ +D G  E+TLLGQNVN++ G G+ G++  FS LL +  +I+
Sbjct: 194 RGKEHDRRPGDILAEIRRCVDEGAKEVTLLGQNVNSF-GYGI-GDRYAFSKLLRACGDIE 251

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           GL R+R+T+ HP   +D +I A  +   +M  LH+P+QSGSD+IL++M R + + ++  I
Sbjct: 252 GLERVRFTSPHPAAFTDDVIAAMAETPNVMHQLHMPLQSGSDKILRAMRRSYRSAKFLDI 311

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           + ++R   PD  IS+D IVGFPGETD+DF ATMD+V +  +  AF+F+YSPR GTP + M
Sbjct: 312 LRKVREAMPDAQISTDVIVGFPGETDEDFEATMDVVRQARFQSAFTFEYSPRPGTPAAEM 371

Query: 379 LEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLI 418
            EQV   V  E   RL+ LQ+++ E++++  +   G+ +EV+I
Sbjct: 372 -EQVPHEVVQERFDRLVKLQEQITEEELAKFE---GRDVEVMI 410


>gi|311064642|ref|YP_003971367.1| tRNA 2-methylthioadenosine synthase [Bifidobacterium bifidum
           PRL2010]
 gi|310866961|gb|ADP36330.1| tRNA 2-methylthioadenosine synthase [Bifidobacterium bifidum
           PRL2010]
          Length = 479

 Score =  283 bits (723), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 157/403 (38%), Positives = 247/403 (61%), Gaps = 29/403 (7%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGY----ERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           F+V + GCQMNV+DS R+  +    GY    E   +  D DLIV+NTC +RE AAE++Y 
Sbjct: 26  FYVHTLGCQMNVHDSERIAGVLEDDGYMPATEEQAADKDVDLIVMNTCAVRENAAERMYG 85

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +G   +LK +      ++ + + GC+AQ + + I +++P V+ V G +    LP LL++
Sbjct: 86  TIGLWADLKRTH----PNMQIAIGGCMAQLDRKRIAQKAPWVDAVFGTKNIGSLPRLLDQ 141

Query: 143 ARFGKRVVDTDYSVEDKFE----RLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
           AR           V D+ +    +L +      R   V+++++I  GC+  CTFC+VP T
Sbjct: 142 ARMAGTC---QVEVADRLDYFPSQLPVA-----RASKVSSWVSISIGCNNTCTFCIVPTT 193

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258
           RG E  R    ++ E R+ +D G  E+TLLGQNVN++ G G+ G++  FS LL +  +I+
Sbjct: 194 RGKEHDRRPGDILAEIRRCVDEGAKEVTLLGQNVNSF-GYGI-GDRYAFSKLLRACGDIE 251

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           GL R+R+T+ HP   +D +I A  +   +M  LH+P+QSGSD+IL++M R + + ++  I
Sbjct: 252 GLERVRFTSPHPAAFTDDVIAAMAETPNVMHQLHMPLQSGSDKILRAMRRSYRSAKFLDI 311

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           + ++R   PD  IS+D IVGFPGETD+DF ATMD+V +  +  AF+F+YSPR GTP + M
Sbjct: 312 LRKVREAMPDAQISTDIIVGFPGETDEDFEATMDVVRQARFQSAFTFEYSPRPGTPAAEM 371

Query: 379 LEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLI 418
            EQV   V  E   RL+ LQ+++ E++++  +   G+ +EV+I
Sbjct: 372 -EQVPHEVVQERFDRLVKLQEQITEEELAKFE---GRDVEVMI 410


>gi|163787659|ref|ZP_02182106.1| hypothetical protein FBALC1_03932 [Flavobacteriales bacterium
           ALC-1]
 gi|159877547|gb|EDP71604.1| hypothetical protein FBALC1_03932 [Flavobacteriales bacterium
           ALC-1]
          Length = 481

 Score =  283 bits (723), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 170/457 (37%), Positives = 255/457 (55%), Gaps = 22/457 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F++SYGC MN  DS  +  +   QG+    ++++ADL+++NTC IR+KA + V   L
Sbjct: 24  RKLFIESYGCAMNFSDSEIVASILSDQGFNTTKNLEEADLVLVNTCSIRDKAEQTVRKRL 83

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            +   +K +  K    + V V GC+A+    + L    IV++VVGP  Y  LP LL    
Sbjct: 84  QQYNVVKRTNPK----MKVGVLGCMAERLKTKFLEEEKIVDLVVGPDAYKDLPNLLAEVD 139

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G+  ++   S E+ +  +S V    N   GVTAF++I  GCD  CTFCVVP+TRG E S
Sbjct: 140 EGRDAINVILSKEETYGDISPVRLNTN---GVTAFVSITRGCDNMCTFCVVPFTRGRERS 196

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNA--WRGKGL--DGEKCT---------FSDLL 251
           R    +++E   L   G  EITLLGQNV++  W G GL  D +K T         F+ LL
Sbjct: 197 RDPQSIIEEINDLWAKGFKEITLLGQNVDSYLWYGGGLKKDFDKATDLQKATAVNFASLL 256

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
              ++ +  +R+R++TS+P+D +  +I+     D +  ++HLPVQSGSDRILK MNR HT
Sbjct: 257 ELAAKAQPKMRIRFSTSNPQDFTLDVIETMSKYDNICKHIHLPVQSGSDRILKEMNRLHT 316

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
             EY ++ID IR + P+ +IS D I GFP E + D + T+ L++ + Y   + F YS R 
Sbjct: 317 REEYFELIDNIRRIIPECSISQDLIAGFPTENEQDHQDTLSLMEYVKYNFGYMFTYSERP 376

Query: 372 GT-PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLV 429
           GT  G  M + V E  K  RL  + +  R+         +   +E+LIEK  K+   +  
Sbjct: 377 GTMAGRKMEDDVPEETKKRRLNDIVQLQRKHSDFRTRQHLNTTVEILIEKSSKKSDLQWS 436

Query: 430 GRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGE 466
           GR+      V   +++ +GD++ V ITD   +TL GE
Sbjct: 437 GRTSDNTVAVFPKEDYKVGDLVNVYITDCTSATLIGE 473


>gi|148240091|ref|YP_001225478.1| 2-methylthioadenine synthetase [Synechococcus sp. WH 7803]
 gi|229891030|sp|A5GML6|MIAB_SYNPW RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|147848630|emb|CAK24181.1| 2-methylthioadenine synthetase [Synechococcus sp. WH 7803]
          Length = 454

 Score =  283 bits (723), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 174/460 (37%), Positives = 268/460 (58%), Gaps = 27/460 (5%)

Query: 22  IVPQR----FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA 77
           ++P R    +++ ++GCQMN  DS RM  +  S GY   ++  DADL++ NTC IR+ A 
Sbjct: 1   MLPSRERGSYWITTFGCQMNKADSERMAGILESMGYREASAELDADLVLYNTCTIRDNAE 60

Query: 78  EKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLP 137
           +KVYS+LGR    +  R +   +L +VVAGCVAQ EGE +LRR P +++V+GPQ   RL 
Sbjct: 61  QKVYSYLGR----QAQRKRTNPNLTLVVAGCVAQQEGESLLRRVPELDLVMGPQHANRLE 116

Query: 138 ELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197
            LL++   G++VV T+       E ++       R   +  ++ +  GC++ CT+CVVP 
Sbjct: 117 TLLQQVDSGQQVVATEE--HHILEDITTA----RRDSSICGWVNVIYGCNERCTYCVVPS 170

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG------EKCTFSDLL 251
            RG E SR    +  E   L   G  EITLLGQN++A+ G+ L G       + T +DLL
Sbjct: 171 VRGKEQSRLPDAIKLEMEGLAAQGFKEITLLGQNIDAY-GRDLPGITPEGRRQHTLTDLL 229

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
           + + +++GL R+R+ TSHPR  +D LI A  DL  L  + H+P QSG + +L++M R +T
Sbjct: 230 HHVHDVEGLERIRFATSHPRYFTDRLIDACADLPKLCEHFHIPFQSGDNDVLRAMARGYT 289

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
              YR+IIDRIR   PD ++S+D IV FPGETD  +R T+ L+++IG+ Q  +  YSPR 
Sbjct: 290 VERYRRIIDRIRERMPDASLSADVIVAFPGETDAQYRRTLALIEEIGFDQVNTAAYSPRP 349

Query: 372 GTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVG 430
            TP ++   Q+ E++K ERL  +   +       N    G++ EVL E  + K+  +L+G
Sbjct: 350 NTPAADWDNQLPEDIKVERLREINALVERCARERNGRYAGRVEEVLAEGINPKDPSQLMG 409

Query: 431 RS-----PWLQSVVLNSKNHNIGDIIKVRITDVKISTLYG 465
           R+      +  +   + + +  GD++ V I  V+  +L G
Sbjct: 410 RTRTNRLTFFSATGADDRRYQAGDLVNVHIDAVRSFSLSG 449


>gi|222098978|ref|YP_002533546.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Thermotoga neapolitana
           DSM 4359]
 gi|221571368|gb|ACM22180.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Thermotoga neapolitana
           DSM 4359]
          Length = 443

 Score =  283 bits (723), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 166/448 (37%), Positives = 267/448 (59%), Gaps = 24/448 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           RF++K++GCQMN  DS  M  +   +G+   ++ ++AD++++NTC +R K+ EK YS LG
Sbjct: 2   RFYIKTFGCQMNENDSETMAGLLMKEGFTPASAPEEADVVIINTCAVRRKSEEKAYSELG 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           ++  +K  R      L+V VAGCVA+ E E++L R    + V+G +   R+ E +++A  
Sbjct: 62  QMLKIKRKR-----KLVVGVAGCVAEKEREKLLERG--ADFVLGTRAVPRVTEAVKKALE 114

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G++V   +  +++    L  +     R     A++TI  GCD+FCT+C+VPYTRG E SR
Sbjct: 115 GEKVALFEDHLDEYTHELPRI-----RTSRHHAWVTIIHGCDRFCTYCIVPYTRGRERSR 169

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL-DGEKCTFSDLLYSLSEIKGLVRLR 264
            ++ +++E +KL + G  E+T LGQNV+A+ GK L DG   + + LL   S+I+G+ R+ 
Sbjct: 170 PMADILEEVKKLAEQGYREVTFLGQNVDAY-GKDLKDG--SSLAKLLEEASKIEGIERIW 226

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           + TS+P D SD LI+       +   +HLPVQSGS+RILK MNRR+T  EY  ++++IRS
Sbjct: 227 FLTSYPTDFSDELIEVIAKNPKVAKSVHLPVQSGSNRILKLMNRRYTKEEYLALLEKIRS 286

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ--- 381
             P++AISSD IVGFP ET++DF  T+DLV+K  + +     YSPR GT      +    
Sbjct: 287 KVPEVAISSDIIVGFPTETEEDFMETVDLVEKAQFERLNLAIYSPREGTVAWKYYKDDVP 346

Query: 382 VDENV-KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440
            +E V + + L+ LQK++  +    N+   G+ + +++E   K  G   GR    + +  
Sbjct: 347 YEEKVRRMQFLMNLQKRINRK---LNERYRGKTVRIIVEAQAK-NGLFYGRDIRNKIIAF 402

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
             ++  IG    V++  +    LYG++V
Sbjct: 403 EGEDWMIGRFADVKVEKITAGPLYGKVV 430


>gi|224372319|ref|YP_002606691.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Nautilia
           profundicola AmH]
 gi|223588403|gb|ACM92139.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Nautilia profundicola
           AmH]
          Length = 422

 Score =  283 bits (723), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 167/446 (37%), Positives = 257/446 (57%), Gaps = 27/446 (6%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ +++++GCQMNV DS  +     S  YE   + +DA+LI+LNTC +REK  +K++S L
Sbjct: 2   KKLYIETFGCQMNVKDSEHI-IAELSDEYETTQNPEDAELILLNTCSVREKPVQKLFSEL 60

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           G ++  KN   K G      V GC A   G+EI++R+P V+ V+G +   R+ E L   +
Sbjct: 61  GALKK-KNPNAKFG------VCGCTASHMGKEIIKRAPFVSFVLGARNVSRIKEALNTPK 113

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
                V TD + +D     +       RK     F+ I  GCDK C+FC+VP TRG E+S
Sbjct: 114 ----AVITDINYDD-----TTYIFKNTRKNPYKDFVNIMVGCDKKCSFCIVPKTRGKELS 164

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK--GLDGEKCTFSDLLYSLSEIKGLVR 262
             +  ++ +  KL   GV EITLLGQNVN + GK   ++  K  F+DLL  +S+I G+ R
Sbjct: 165 IPMDLIIKQIEKLAKEGVKEITLLGQNVNNY-GKRFSVEHPKVDFTDLLKEVSKIDGIER 223

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+T+ HP    D  +    +   +  ++H P+QSGS  ILK+M R +T   +    + I
Sbjct: 224 IRFTSPHPLHADDRFLDEFANNPKICKHIHFPLQSGSSEILKAMRRGYTKEWFLNRCEII 283

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R + PD++I++D IVGFPGE+++DF  TMD+++K+ + Q FSF YSPR  T  + M  QV
Sbjct: 284 RQI-PDVSITTDIIVGFPGESEEDFEHTMDVLEKVRFEQIFSFVYSPRPLTEAAEMPNQV 342

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
           D+N+  ERL  LQ +  E         +G+I +VLI++ G       G+S    +V +  
Sbjct: 343 DKNIAKERLYRLQSRHGEILDEIAKNQIGKIYKVLIDEPGS------GKSDNFFTVKIPE 396

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
            N  +G+I+ V+IT+    TL GE++
Sbjct: 397 TNKYLGEIVDVKITEANKHTLKGEVI 422


>gi|227875229|ref|ZP_03993371.1| possible tRNA 2-methylthioadenine synthetase [Mobiluncus mulieris
           ATCC 35243]
 gi|227844134|gb|EEJ54301.1| possible tRNA 2-methylthioadenine synthetase [Mobiluncus mulieris
           ATCC 35243]
          Length = 552

 Score =  282 bits (722), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 155/428 (36%), Positives = 245/428 (57%), Gaps = 31/428 (7%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDD------------ADLIVLNTC 70
           +P+ + V + GCQMN +DS RM  +  + G   V+S+ +            AD++VLNTC
Sbjct: 23  LPRTYHVVTLGCQMNEHDSERMAGLLDAAGMVPVSSVPEKAARATRAGDGGADVVVLNTC 82

Query: 71  HIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGP 130
            +RE AA K+Y  LG++  +K  R      +++ V GC AQ EG  ILRR+P V+ + G 
Sbjct: 83  SVRENAANKLYGHLGQLAEVKRERP----GMMIAVGGCFAQQEGSGILRRAPWVDAIFGT 138

Query: 131 QTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190
                LP LL RA   +   +    +E+  +    +   + R    +A+++I  GC+  C
Sbjct: 139 HNIDMLPVLLRRAELRQ---EAAVELEETLKVFPSMLPAH-RTSPASAWVSISVGCNNTC 194

Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDL 250
           TFC+VP  RG E  R   +++ E + ++  G  E+TLLGQNVN++ G G  G +  F+ L
Sbjct: 195 TFCIVPSLRGRERDREPEEILRELQAVVAQGAVEVTLLGQNVNSY-GNGF-GRRGAFAQL 252

Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
           L       GL RLR+ + HP   ++ +I A  +   +MP LH P+QSGSDR+L+ M R +
Sbjct: 253 LREAGRTPGLERLRFASPHPAAFTEDVIAAMAETPTVMPSLHFPLQSGSDRVLRQMRRSY 312

Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370
               + +I+  +R   P+ AI++D IVGFPGETD DF AT+ ++++  ++ AF+F YS R
Sbjct: 313 RVERFLRILGEVRDAIPEAAITTDVIVGFPGETDADFEATLRVMEQARFSAAFTFIYSRR 372

Query: 371 LGTPGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG---KE 424
            GTP ++  +QV   V +E   RLL LQ+++  ++   N+   GQ +EVL+ + G   +E
Sbjct: 373 PGTPAADREDQVPSEVVSERYQRLLALQERISTEE---NERLEGQTVEVLVGEQGTKDRE 429

Query: 425 KGKLVGRS 432
            G++ GR+
Sbjct: 430 TGRMSGRA 437


>gi|209525671|ref|ZP_03274208.1| RNA modification enzyme, MiaB family [Arthrospira maxima CS-328]
 gi|209493840|gb|EDZ94158.1| RNA modification enzyme, MiaB family [Arthrospira maxima CS-328]
          Length = 436

 Score =  282 bits (722), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 170/443 (38%), Positives = 263/443 (59%), Gaps = 23/443 (5%)

Query: 36  MNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRI 95
           MN  DS RM  +    G   V   + AD+++ NTC IR+ A +KVYS+LGR    +  R 
Sbjct: 1   MNKADSERMAGILDEMGLTFVEDPNQADIVLYNTCTIRDNAEQKVYSYLGR----QAKRK 56

Query: 96  KEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYS 155
           +E  +L ++VAGCVAQ EGE +LRR P +++V+GPQ   RL +LLE+   G +VV T   
Sbjct: 57  QENPNLTLIVAGCVAQQEGEALLRRVPELDLVMGPQHANRLQDLLEQVFEGSQVVAT--- 113

Query: 156 VEDKFERLSIVDGGYNRKR--GVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
                E ++IV+     +R   +TA++ +  GC++ CT+CVVP  RG E SR+   +  E
Sbjct: 114 -----EPINIVEDITKPRRDSNITAWVNVIYGCNERCTYCVVPNVRGTEQSRTPEAIRAE 168

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDG------EKCTFSDLLYSLSEIKGLVRLRYTT 267
             +L   G  E+TLLGQN++A+ G+ L G       + T +DLLY + +I G+ R+R+ T
Sbjct: 169 MEELARAGYKEVTLLGQNIDAY-GRDLPGSTPDGRHQHTLTDLLYYVHDIPGIERIRFAT 227

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
           SHPR  ++ LI+A  +L  +  + H+P QSG + +LK+M R +T  +YR+II+ IR   P
Sbjct: 228 SHPRYFTERLIRACAELPKVCEHFHIPFQSGDNDVLKAMARGYTHEKYRRIINTIREYIP 287

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
           D +IS+D IVGFPGET+  F  T+ LVD IG+    +  YSPR GT  +    Q+ E VK
Sbjct: 288 DASISADAIVGFPGETEAQFENTLKLVDDIGFDLLNTAAYSPRPGTGAALWENQLSEEVK 347

Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSPWLQSVVLNSKNHN 446
           A+RL  L + +  + +  +     +I EVL+E  + K+  +++GR+   +          
Sbjct: 348 ADRLQRLNRLVNVKAMERSQRYRDRIEEVLVEGTNPKDPSQVMGRTRGNRLTFFKGNLAE 407

Query: 447 I-GDIIKVRITDVKISTLYGELV 468
           + G+++KV+I +V+  +L GE +
Sbjct: 408 LSGELVKVKIIEVRAFSLTGEPI 430


>gi|295115178|emb|CBL36025.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [butyrate-producing
           bacterium SM4/1]
          Length = 457

 Score =  282 bits (722), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 167/445 (37%), Positives = 261/445 (58%), Gaps = 16/445 (3%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           F ++++GCQMN +DS ++E +    G+ + ++ ++ADL++ NTC +RE A ++VY  LG 
Sbjct: 22  FHIETFGCQMNAHDSEKLEGILLEAGFVKTDT-EEADLVLYNTCTVRENANQRVYGRLGY 80

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELL-ERA 143
           + +LK    K+   +L+ + GC+ Q +   E+I +    V+V+ G    Y+L ELL  R 
Sbjct: 81  LNSLK----KKNPRMLIGLCGCMMQEDQVVEKIKKTYRFVDVIFGTHNIYKLAELLFARL 136

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             GK V+D  +   DK     + D    RK    + + I  GC+ FC++C+VPY RG E 
Sbjct: 137 HTGKMVIDI-WKDTDKI----VEDLPSERKYPFKSGVNIMFGCNNFCSYCIVPYVRGRER 191

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR    ++ E   L+ +GV E+ LLGQNVN++ GK L  E  TF++LL  + +I+GL R+
Sbjct: 192 SRRPEDIIKEIEGLVADGVVEVMLLGQNVNSY-GKNLP-EPITFAELLRRVEQIEGLERI 249

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+ TSHP+D+SD LI+   D   +  +LHLP+QSG  RIL  MNRR+T  +Y  + ++I+
Sbjct: 250 RFMTSHPKDLSDELIEVMRDSKKICRHLHLPLQSGRSRILGQMNRRYTKEQYLALAEKIK 309

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           +  PDI++++D IVGFPGET +DF  T+D+V K+ Y  AF+F YS R GTP + M  QV 
Sbjct: 310 TAIPDISLTTDIIVGFPGETKEDFEETLDVVRKVRYDSAFTFIYSKRTGTPAAVMENQVP 369

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRSPWLQSVVLNS 442
           E+V  ER   L  +++      +   V  + +VL+E+     +G + GR     +V    
Sbjct: 370 EDVIKERFDRLLSEVQRISNEISGRDVHTVQKVLVEEPDTHAEGMVTGRLSNNITVHFEG 429

Query: 443 KNHNIGDIIKVRITDVKISTLYGEL 467
               IG I+ V + + K     G+L
Sbjct: 430 SRELIGKIVDVYLEESKGFYYMGKL 454


>gi|306818491|ref|ZP_07452214.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Mobiluncus mulieris ATCC
           35239]
 gi|304648664|gb|EFM45966.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Mobiluncus mulieris ATCC
           35239]
          Length = 552

 Score =  282 bits (722), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 155/428 (36%), Positives = 245/428 (57%), Gaps = 31/428 (7%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDD------------ADLIVLNTC 70
           +P+ + V + GCQMN +DS RM  +  + G   V+S+ +            AD++VLNTC
Sbjct: 23  LPRTYHVVTLGCQMNEHDSERMAGLLDAAGMVPVSSVPEKAARATRAGDGGADVVVLNTC 82

Query: 71  HIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGP 130
            +RE AA K+Y  LG++  +K  R      +++ V GC AQ EG  ILRR+P V+ + G 
Sbjct: 83  SVRENAANKLYGHLGQLAEVKRERP----GMMIAVGGCFAQQEGSGILRRAPWVDAIFGT 138

Query: 131 QTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190
                LP LL RA   +   +    +E+  +    +   + R    +A+++I  GC+  C
Sbjct: 139 HNIDMLPVLLRRAELRQ---EAAVELEETLKVFPSMLPAH-RTSPASAWVSISVGCNNTC 194

Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDL 250
           TFC+VP  RG E  R   +++ E + ++  G  E+TLLGQNVN++ G G  G +  F+ L
Sbjct: 195 TFCIVPSLRGRERDREPEEILRELQAVVAQGAVEVTLLGQNVNSY-GNGF-GRRGAFAQL 252

Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
           L       GL RLR+ + HP   ++ +I A  +   +MP LH P+QSGSDR+L+ M R +
Sbjct: 253 LREAGRTPGLERLRFASPHPAAFTEDVIAAMAETPTVMPSLHFPLQSGSDRVLRQMRRSY 312

Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370
               + +I+  +R   P+ AI++D IVGFPGETD DF AT+ ++++  ++ AF+F YS R
Sbjct: 313 RVERFLRILGEVRDAIPEAAITTDVIVGFPGETDADFEATLRVMEQARFSAAFTFIYSRR 372

Query: 371 LGTPGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG---KE 424
            GTP ++  +QV   V +E   RLL LQ+++  ++   N+   GQ +EVL+ + G   +E
Sbjct: 373 PGTPAADREDQVPSEVVSERYQRLLALQERISTEE---NERLEGQTVEVLVGEQGTKDRE 429

Query: 425 KGKLVGRS 432
            G++ GR+
Sbjct: 430 TGRMSGRA 437


>gi|320534666|ref|ZP_08035108.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Actinomyces sp. oral
           taxon 171 str. F0337]
 gi|320133122|gb|EFW25628.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Actinomyces sp. oral
           taxon 171 str. F0337]
          Length = 495

 Score =  282 bits (722), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 154/422 (36%), Positives = 248/422 (58%), Gaps = 26/422 (6%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDA------------DLIVLNTCH 71
           P+ + V++ GCQMNV+DS  M  +    GY RV  + +A            D++++NTC 
Sbjct: 18  PRTYHVRTLGCQMNVHDSEHMAGLLERAGYLRVEDVPEAAARATDAGDGGADVVIINTCS 77

Query: 72  IREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ 131
           +RE AA +++  LG++  +K  R      + + VAGC+AQ  GE I+ R+P V+VV G  
Sbjct: 78  VRENAATRLFGNLGQLAAVKRERPG----MQIAVAGCLAQQMGEGIVDRAPWVDVVFGTH 133

Query: 132 TYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKR--GVTAFLTIQEGCDKF 189
               LP LLERAR      ++  +VE + E L +       +R     A+++I  GC+  
Sbjct: 134 NLDVLPALLERARH-----NSAAAVELE-ESLKVFPSTLPTRRESSYAAWVSIAVGCNNT 187

Query: 190 CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSD 249
           CTFC+VP  RG +  R    V+ E   +   G  E+TLLGQNVN++ G G  G++  F+ 
Sbjct: 188 CTFCIVPSLRGKQRDRRPGDVLAEVEAVAAQGAIEVTLLGQNVNSY-GVGF-GDRGAFAK 245

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
           LL +   ++G+ R+R+T+ HP   +D +I+A    + +MP LH+P+QSGSDR+L++M R 
Sbjct: 246 LLRATGSVEGIERVRFTSPHPAAFTDDVIEAMAFTEAVMPSLHMPLQSGSDRVLRAMRRS 305

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369
           +    +  I+D++R V P+ AI++D IVGFPGET++DF+AT+D+V++  +A A++F+YSP
Sbjct: 306 YRTQRFLGILDKVRDVMPEAAITTDIIVGFPGETEEDFQATLDVVEQARFASAYTFEYSP 365

Query: 370 RLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV 429
           R GTP ++  +QV   V  +R   L   +R      N+   G+++EVL+ +    +  + 
Sbjct: 366 RPGTPAADRDDQVPVEVVKDRYRRLDALVRRIAHEENERQEGRVVEVLVAEGEGRRDSVT 425

Query: 430 GR 431
            R
Sbjct: 426 AR 427


>gi|269978120|ref|ZP_06185070.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Mobiluncus mulieris 28-1]
 gi|269933629|gb|EEZ90213.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Mobiluncus mulieris 28-1]
          Length = 547

 Score =  282 bits (722), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 155/428 (36%), Positives = 245/428 (57%), Gaps = 31/428 (7%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDD------------ADLIVLNTC 70
           +P+ + V + GCQMN +DS RM  +  + G   V+S+ +            AD++VLNTC
Sbjct: 18  LPRTYHVVTLGCQMNEHDSERMAGLLDAAGMVPVSSVPEKAARATRAGDGGADVVVLNTC 77

Query: 71  HIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGP 130
            +RE AA K+Y  LG++  +K  R      +++ V GC AQ EG  ILRR+P V+ + G 
Sbjct: 78  SVRENAANKLYGHLGQLAEVKRERP----GMMIAVGGCFAQQEGSGILRRAPWVDAIFGT 133

Query: 131 QTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190
                LP LL RA   +   +    +E+  +    +   + R    +A+++I  GC+  C
Sbjct: 134 HNIDMLPVLLRRAELRQ---EAAVELEETLKVFPSMLPAH-RTSPASAWVSISVGCNNTC 189

Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDL 250
           TFC+VP  RG E  R   +++ E + ++  G  E+TLLGQNVN++ G G  G +  F+ L
Sbjct: 190 TFCIVPSLRGRERDREPEEILRELQAVVAQGAVEVTLLGQNVNSY-GNGF-GRRGAFAQL 247

Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
           L       GL RLR+ + HP   ++ +I A  +   +MP LH P+QSGSDR+L+ M R +
Sbjct: 248 LREAGRTPGLERLRFASPHPAAFTEDVIAAMAETPTVMPSLHFPLQSGSDRVLRQMRRSY 307

Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370
               + +I+  +R   P+ AI++D IVGFPGETD DF AT+ ++++  ++ AF+F YS R
Sbjct: 308 RVERFLRILGEVRDAIPEAAITTDVIVGFPGETDADFEATLRVMEQARFSAAFTFIYSRR 367

Query: 371 LGTPGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG---KE 424
            GTP ++  +QV   V +E   RLL LQ+++  ++   N+   GQ +EVL+ + G   +E
Sbjct: 368 PGTPAADREDQVPSEVVSERYQRLLALQERISTEE---NERLEGQTVEVLVGEQGTKDRE 424

Query: 425 KGKLVGRS 432
            G++ GR+
Sbjct: 425 TGRMSGRA 432


>gi|307700980|ref|ZP_07638005.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Mobiluncus mulieris
           FB024-16]
 gi|307613975|gb|EFN93219.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Mobiluncus mulieris
           FB024-16]
          Length = 547

 Score =  282 bits (722), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 155/428 (36%), Positives = 245/428 (57%), Gaps = 31/428 (7%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDD------------ADLIVLNTC 70
           +P+ + V + GCQMN +DS RM  +  + G   V+S+ +            AD++VLNTC
Sbjct: 18  LPRTYHVVTLGCQMNEHDSERMAGLLDAAGMVPVSSVPEKAARATRAGDGGADVVVLNTC 77

Query: 71  HIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGP 130
            +RE AA K+Y  LG++  +K  R      +++ V GC AQ EG  ILRR+P V+ + G 
Sbjct: 78  SVRENAANKLYGHLGQLAEVKRERP----GMMIAVGGCFAQQEGSGILRRAPWVDAIFGT 133

Query: 131 QTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190
                LP LL RA   +   +    +E+  +    +   + R    +A+++I  GC+  C
Sbjct: 134 HNIDMLPVLLRRAELRQ---EAAVELEETLKVFPSMLPAH-RTSPASAWVSISVGCNNTC 189

Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDL 250
           TFC+VP  RG E  R   +++ E + ++  G  E+TLLGQNVN++ G G  G +  F+ L
Sbjct: 190 TFCIVPSLRGRERDREPEEILRELQAVVAQGAVEVTLLGQNVNSY-GNGF-GRRGAFAQL 247

Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
           L       GL RLR+ + HP   ++ +I A  +   +MP LH P+QSGSDR+L+ M R +
Sbjct: 248 LREAGRTPGLERLRFASPHPAAFTEDVIAAMAETPTVMPSLHFPLQSGSDRVLRQMRRSY 307

Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370
               + +I+  +R   P+ AI++D IVGFPGETD DF AT+ ++++  ++ AF+F YS R
Sbjct: 308 RVERFLRILGEVRDAIPEAAITTDVIVGFPGETDADFEATLRVMEQARFSAAFTFIYSRR 367

Query: 371 LGTPGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG---KE 424
            GTP ++  +QV   V +E   RLL LQ+++  ++   N+   GQ +EVL+ + G   +E
Sbjct: 368 PGTPAADREDQVPSEVVSERYQRLLALQERISTEE---NERLEGQTVEVLVGEQGTKDRE 424

Query: 425 KGKLVGRS 432
            G++ GR+
Sbjct: 425 TGRMSGRA 432


>gi|291457707|ref|ZP_06597097.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bifidobacterium breve DSM
           20213]
 gi|291380760|gb|EFE88278.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bifidobacterium breve DSM
           20213]
          Length = 483

 Score =  282 bits (721), Expect = 9e-74,   Method: Compositional matrix adjust.
 Identities = 160/402 (39%), Positives = 246/402 (61%), Gaps = 27/402 (6%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGY-----ERVNSMDDADLIVLNTCHIREKAAEKVY 81
           F + + GCQMNV+DS R+  +  + GY     E+VN   D DLIVLNTC +RE AAE++Y
Sbjct: 30  FHIHTLGCQMNVHDSERIAGVLETDGYVPATEEQVND-HDLDLIVLNTCAVRENAAERMY 88

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             +G    +K  R     +L + V GC+AQ + ++I  ++P V  V G +    LP+LL 
Sbjct: 89  GTVGLWAEMKRQR----PNLQIAVGGCMAQLDRQKIANKAPWVAAVFGTKNIGDLPQLLN 144

Query: 142 RARFGKRVVDT-DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           +     R  DT    V+D+ ++           R V++++ I  GC+  CTFC+VP TRG
Sbjct: 145 Q----NRATDTPQVKVDDQLQQFPSQLPAARASR-VSSWVAISVGCNNTCTFCIVPTTRG 199

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E  R    ++DE R+ + NG  E+TLLGQNVN++ G G+ G++  FS LL +   I GL
Sbjct: 200 KEKDRRPGDILDEVRQCVANGAKEVTLLGQNVNSF-GYGI-GDRYAFSKLLRACGTIDGL 257

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+T+ HP   +D +I+A  +   +M  LH+P+QSGSD+IL++M R + A ++  I++
Sbjct: 258 ERVRFTSPHPAAFTDDVIEAMAETPNVMHQLHMPLQSGSDKILRAMRRSYRASKFMTILE 317

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R   PD  IS+D IVGFPGET++DF+ T+D+V +  ++ AF+F YSPR GTP + M E
Sbjct: 318 KVRQAMPDAQISTDIIVGFPGETEEDFQQTLDVVRQARFSSAFTFIYSPRPGTPAAEM-E 376

Query: 381 QVDENV---KAERLLCLQKKLREQQV-SFNDACVGQIIEVLI 418
           QV  +V   +  RL+ LQ+++  + + SF     G+ +EV+I
Sbjct: 377 QVPHDVVQDRFNRLVALQEQITAENLQSFE----GRDVEVMI 414


>gi|86742200|ref|YP_482600.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Frankia sp.
           CcI3]
 gi|123737135|sp|Q2J771|MIAB_FRASC RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|86569062|gb|ABD12871.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Frankia sp. CcI3]
          Length = 540

 Score =  282 bits (721), Expect = 9e-74,   Method: Compositional matrix adjust.
 Identities = 165/415 (39%), Positives = 246/415 (59%), Gaps = 24/415 (5%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           + V+++GCQMNV+DS R+  +  S GY  V+   +AD++V NTC +RE A  ++Y  LG+
Sbjct: 6   YEVRTFGCQMNVHDSERLCGLLESAGYSPVDPGGEADVVVFNTCAVRENADNRLYGNLGQ 65

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           +  +K    K    + + V GC+AQ +   IL R+P V+VV G    +RLP LLERAR  
Sbjct: 66  LVPVK----KGHPGMQIAVGGCLAQKDRAAILDRAPWVDVVFGTHNLHRLPVLLERARH- 120

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGV--TAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
               +    VE   E L +       +R    +A+++I  GCD  CTFC+VP  RG E  
Sbjct: 121 ----NAAAQVEIA-EALEVFPSSLPTRRASHHSAWVSISVGCDNTCTFCIVPSLRGRERD 175

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R    V+ E   L+  G  EITLLGQNVN++ G+ L G+   F+ LL +   + GL R+R
Sbjct: 176 RRPGDVLAEVEALVAEGALEITLLGQNVNSY-GRSL-GDPGAFAKLLAACGRVDGLERVR 233

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +T+ HPRD +D +I+A      +   LH+P+QSGSD +L+ M R +    +  I++R+R+
Sbjct: 234 FTSPHPRDFTDDVIEAMATTSNVCHQLHMPLQSGSDTVLRRMRRSYRRDRFLGIVERVRA 293

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             PD AI++D IVGFPGET+ DF  T+D+V    ++ AF+F+YSPR GTP + M  QVD 
Sbjct: 294 AMPDAAITTDIIVGFPGETEADFADTLDVVRAARFSGAFTFQYSPRPGTPAATMDAQVDR 353

Query: 385 NVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKE---KGKLVGRS 432
              A+   RL+ LQ ++   +   N A VG+ +EVL+ E  G++    G++ GR+
Sbjct: 354 ATVADRYTRLVALQDEISWAE---NRALVGRRVEVLVSEGEGRKDGATGRMSGRA 405


>gi|291538852|emb|CBL11963.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Roseburia intestinalis
           XB6B4]
          Length = 496

 Score =  282 bits (721), Expect = 9e-74,   Method: Compositional matrix adjust.
 Identities = 174/463 (37%), Positives = 258/463 (55%), Gaps = 34/463 (7%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P  F V ++GCQMN  DS ++  +    GY   +S + AD ++ NTC +RE A  KVY  
Sbjct: 50  PLTFHVSTFGCQMNARDSEKLVGILEKIGYVEEDS-EKADFVIYNTCTVRENANNKVYGR 108

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELL- 140
           LG +   +    K+   +++ + GC+ Q     E+I +    VN++ G    Y+  EL+ 
Sbjct: 109 LGYLNGFQ----KKNPFMMIGLCGCMMQEPTVVEKIKQSYRFVNLIFGTHNIYKFAELIV 164

Query: 141 ---------ERARFGKRVV-----DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGC 186
                      A  G  +      DTD  VED       V+  Y+ K GV     I  GC
Sbjct: 165 TALENSYSEHAAGHGTSMTIDIWKDTDKIVED-----LPVERKYSFKSGVN----IMFGC 215

Query: 187 DKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT 246
           + FC++C+VPY RG E SR   +++ E  +L  +GV EI LLGQNVN++ GK L+ +  T
Sbjct: 216 NNFCSYCIVPYVRGRERSREPKEIIREVERLAADGVVEIMLLGQNVNSY-GKNLE-QPMT 273

Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306
           F+ LL  + ++ G+ R+R+ TSHP+D+SD LI+   +   +  +LHLP+QSGS RILK M
Sbjct: 274 FAQLLQEIEKVDGIERIRFMTSHPKDLSDDLIEVMKNSKKICKHLHLPLQSGSSRILKLM 333

Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
           NRR+    Y +++D+IR+  PDIA+++D IVGFPGET++DF  TMD+V K+ Y  AF+F 
Sbjct: 334 NRRYDKEHYLELVDKIRAAVPDIALTTDIIVGFPGETEEDFEETMDVVRKVRYDSAFTFI 393

Query: 367 YSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG 426
           YS R GTP + M +Q+ ++V   R   L K+++        A  GQ + VLIE+  ++  
Sbjct: 394 YSKRTGTPAAVMDDQIPDDVIKARFDRLLKEVQTISAEKAGALTGQTLPVLIEEKNEQDA 453

Query: 427 KLV-GRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            LV GR      V L      IG I+ V++ + K     GE V
Sbjct: 454 ALVTGRLSNNSVVHLPGTEDMIGKIVDVKLLECKGFYYMGECV 496


>gi|269123553|ref|YP_003306130.1| RNA modification enzyme, MiaB family [Streptobacillus moniliformis
           DSM 12112]
 gi|268314879|gb|ACZ01253.1| RNA modification enzyme, MiaB family [Streptobacillus moniliformis
           DSM 12112]
          Length = 438

 Score =  282 bits (721), Expect = 9e-74,   Method: Compositional matrix adjust.
 Identities = 157/442 (35%), Positives = 261/442 (59%), Gaps = 13/442 (2%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V +YGCQMNV +S +++ +F + GY+ V+ +DD D + LNTC +RE AA +++  LG + 
Sbjct: 6   VITYGCQMNVNESAKIKKIFQNMGYQVVDEIDDCDAVFLNTCTVREGAATQIFGKLGELI 65

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
            LK ++       ++ + GC AQ  G E++++ P++++V+G Q   R+P+ +E+    + 
Sbjct: 66  ELKKNK-----GTVIGITGCFAQEAGFELIKKFPMIDIVMGNQNIGRIPDAIEKILKHES 120

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
             +     ED+       D G ++    TA ++I  GCDK C+FC+VPY RG E S  + 
Sbjct: 121 EHEVYTDNEDELPPRLDADFGSDK----TASISISYGCDKRCSFCIVPYVRGKERSVPME 176

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
            ++ + R  +  G  EI LLGQNVNA+  K  +G+  TF+ LL  + +I+G   LR+T+ 
Sbjct: 177 DILSDVRHYLKKGAKEIVLLGQNVNAYGKKFKNGD--TFAKLLDEICKIEGDYILRFTSP 234

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
           HP+D +D +I      + +   +H+P+QSGS +ILK M R +T  ++  +  +I+   P+
Sbjct: 235 HPKDFTDDVIDVIARNEKIARCIHMPLQSGSTKILKKMIRGYTKEQFLDLAYKIKERIPE 294

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
            ++++D IVGFPGETD+DF+ T+D+V+K+G+  A+ F YS R GT  + M EQV E +K 
Sbjct: 295 ASLTTDIIVGFPGETDEDFKDTLDVVEKVGFENAYIFMYSIRRGTRAAIMDEQVSEEIKK 354

Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNI- 447
           ERL  L      +    +   +G+++ VL+E   K+  +++        VVL S +  + 
Sbjct: 355 ERLQKLNNLQDRRAYKESVKYLGKVMRVLVEGPSKKNKEILTGRTSTNKVVLFSGDAKLY 414

Query: 448 -GDIIKVRITDVKISTLYGELV 468
            G  + V+I + K  TLYGE+V
Sbjct: 415 RGRFVNVKINECKTWTLYGEIV 436


>gi|317970572|ref|ZP_07971962.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Synechococcus
           sp. CB0205]
          Length = 461

 Score =  282 bits (721), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 173/455 (38%), Positives = 268/455 (58%), Gaps = 31/455 (6%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           +++ ++GCQMN  DS RM  +  S GY    +  +ADL++ NTC IR+ A +KVYS+LGR
Sbjct: 18  YWITTFGCQMNKADSERMAGILESMGYSEATAELEADLVLYNTCTIRDNAEQKVYSYLGR 77

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
               +  R +   +L +VVAGCVAQ EGE +LRR P +++V+GPQ   RL  LL +   G
Sbjct: 78  ----QAQRKRVNPNLTLVVAGCVAQQEGESLLRRVPELDLVMGPQHANRLDVLLSQVEQG 133

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           ++VV T+       E ++       R   +  ++ +  GC++ CT+CVVP  RG E SR 
Sbjct: 134 QQVVATEE--HHILEDITTA----RRDSSICGWVNVIYGCNERCTYCVVPSVRGKEQSRL 187

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG------EKCTFSDLLYSLSEIKGL 260
              +  E   L   G  EITLLGQN++A+ G+ L G       + T +DLL  + +++G+
Sbjct: 188 PEAIKLEMEGLAAQGFKEITLLGQNIDAY-GRDLPGITPEGRRQHTLTDLLQFVHDVEGI 246

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+ TSHPR  ++ LI A  DL  +  + H+P QSG D +LK+M R +T   YR+IID
Sbjct: 247 ERIRFATSHPRYFTERLIDACADLPKVCEHFHVPFQSGDDDVLKAMARGYTIDRYRRIID 306

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           RIR   PD +IS+D IV FPGETD  +R T+DL+D+IG+ Q  +  YSPR  TP ++   
Sbjct: 307 RIRDRMPDASISADVIVAFPGETDAQYRRTLDLIDEIGFDQVNTAAYSPRPNTPAADWPN 366

Query: 381 QVDENVKAERL----LCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRS--- 432
           Q+ E VK +RL      +++K +E+   +     G+  +VL+E  + K+  +++GR+   
Sbjct: 367 QLSEEVKVQRLQEINALVERKAKERSARY----AGRTEQVLVEGVNPKQADQVMGRTRTN 422

Query: 433 --PWLQSVVLNSKNHNIGDIIKVRITDVKISTLYG 465
              +  +   +  +   GD+++VRI +V+  +L G
Sbjct: 423 RLTFFPAARASEGHWQAGDLVEVRIEEVRAFSLSG 457


>gi|315226650|ref|ZP_07868438.1| tRNA-I(6)A37 thiotransferase [Parascardovia denticolens DSM 10105]
 gi|315120782|gb|EFT83914.1| tRNA-I(6)A37 thiotransferase [Parascardovia denticolens DSM 10105]
          Length = 501

 Score =  282 bits (721), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 165/450 (36%), Positives = 262/450 (58%), Gaps = 38/450 (8%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD----DADLIVLNTCHIREKAAEKVYS 82
           ++V + GCQMNV+DS R+  +  S GY + N +     D DLIV+NTC +RE A+ ++Y 
Sbjct: 50  YYVHTLGCQMNVHDSERIAGVLESDGYVKANQVQIDSHDLDLIVMNTCAVRENASNRMYG 109

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            LG+   LK    +E   L + V GC+AQ + + I  R+P V+ V G +    L  LL++
Sbjct: 110 TLGQWAELK----RENPRLQIAVGGCMAQKDRQRITERAPWVDAVFGTKNIGSLTGLLDK 165

Query: 143 ARFGKR-----VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197
           AR  +R       D DY       +L +     +R   V+A++ I  GC+  CTFC+VP 
Sbjct: 166 ARAERRSQVQVATDLDYFPS----QLPV-----SRASRVSAWVAISMGCNNTCTFCIVPS 216

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257
            RG E  R    V+DE ++ +D G  E+TLLGQNVN++ G  + G++  FS LL +  +I
Sbjct: 217 VRGRERDRRPGDVLDEIQRCVDAGSKEVTLLGQNVNSY-GYSM-GDRYAFSKLLRACGKI 274

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
            GL R+R+T+ HP   +D +I+A  +   +M  LH+P+QSGSDRIL++M R +   ++  
Sbjct: 275 DGLERVRFTSPHPAAFTDDVIEAMAETPNVMHQLHMPLQSGSDRILRAMRRSYRTAKFMD 334

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
           I+ ++R+  PD  IS+D IVGFPGET++DF+ T+DL+ +  +A A++F+YSPR GTP + 
Sbjct: 335 ILGKVRAAMPDAQISTDVIVGFPGETEEDFQRTLDLISQARFASAYTFEYSPRPGTPAA- 393

Query: 378 MLEQVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG---KLVGR 431
           +L Q+  +V   +  RL  LQ+++ E+ +    A  G+ +EV++   G++ G   ++ GR
Sbjct: 394 LLPQIPADVMRDRYTRLHDLQEEITEEGLK---AFRGKEVEVMVTGQGRKDGNTHRITGR 450

Query: 432 SPWLQSVVLNSKN----HNIGDIIKVRITD 457
                 V +          +GD +   +TD
Sbjct: 451 EKTGTLVHIGPPEGYPAARVGDFVTCTVTD 480


>gi|153864929|ref|ZP_01997651.1| tRNA-i(6)A37 modification enzyme MiaB [Beggiatoa sp. SS]
 gi|152145575|gb|EDN72348.1| tRNA-i(6)A37 modification enzyme MiaB [Beggiatoa sp. SS]
          Length = 304

 Score =  282 bits (721), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 136/298 (45%), Positives = 202/298 (67%), Gaps = 2/298 (0%)

Query: 172 RKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQN 231
           +  G TAF++I EGC  +CTFCVVPYTRG E+SR    V+ E   L D GV E+TLLGQN
Sbjct: 5   KAEGPTAFVSIMEGCSHYCTFCVVPYTRGEEVSRPFDDVIAEVAFLADQGVREVTLLGQN 64

Query: 232 VNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL 291
           VN +RG   +G+    + L+  ++ I G+ R+RYTTSHP ++S+ LI+ + ++  L+ +L
Sbjct: 65  VNGYRGHKAEGDIADLALLITYIAAIDGIERIRYTTSHPLELSENLIQVYAEVPKLVSHL 124

Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351
           HLPVQSGSDRIL  M R HTA EY+Q + ++R+VRPD+++SSDFI+GFPGET+ DF+ATM
Sbjct: 125 HLPVQSGSDRILSLMKRGHTALEYKQKVRKLRAVRPDLSLSSDFIIGFPGETEADFQATM 184

Query: 352 DLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVG 411
            L+++IG+  +FSF YSPR GTP +++ + V   +K +RL  LQ ++ E   + + + VG
Sbjct: 185 QLIEEIGFDHSFSFIYSPRPGTPAASLPDDVPIALKKQRLAQLQARITEMAHAISASLVG 244

Query: 412 QIIEVLIEKHGKEKGK--LVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
            I  +L+E+  ++  K  + GR+   + V    K   IG  ++VRIT+   ++L GE+
Sbjct: 245 SIQRILVEQPSRKNPKELVAGRTENNRVVNFAGKASLIGQFVEVRITEALPNSLRGEI 302


>gi|183981582|ref|YP_001849873.1| 2-methylthioadenine synthetase, MiaB [Mycobacterium marinum M]
 gi|229890403|sp|B2HGN2|MIAB1_MYCMM RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB 1; AltName: Full=tRNA-i(6)A37 methylthiotransferase
           1
 gi|183174908|gb|ACC40018.1| 2-methylthioadenine synthetase, MiaB [Mycobacterium marinum M]
          Length = 529

 Score =  282 bits (721), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 167/464 (35%), Positives = 255/464 (54%), Gaps = 37/464 (7%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           + V++ GC MN +DS RM  +    GY + +    ADL+V NTC +RE A  K+Y  L  
Sbjct: 27  YEVRTLGCLMNAHDSERMAGLLEDAGYIKADPGAPADLVVFNTCAVRENADNKLYGSLAH 86

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           +  +K SR      + + V GC+AQ +   +L R+P V+VV G      LP LLER+R  
Sbjct: 87  LAPIKASRPG----MQIAVGGCLAQKDRHIVLDRAPWVDVVFGTHNIGSLPVLLERSRHN 142

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKR--GVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
           +     D  VE   E L          R     A+++I  GC+  CTFC+VP  RG E  
Sbjct: 143 Q-----DAQVE-ILESLRTFPSALPAARDSAYAAWVSISVGCNNSCTFCIVPSLRGKEAD 196

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT-----------FSDLLYS 253
           R    ++ E + L++ GV E+TLLGQNVN++     D +  T           F+ LL +
Sbjct: 197 RRPGDILAEVQALVEQGVLEVTLLGQNVNSYGVNFADPDPSTGEEPLPRDRGAFAQLLRA 256

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
              I+GL R+R+T+ HP + +D +I A  +   + P+LH+P+QSGSD+ILK+M R +   
Sbjct: 257 CGRIEGLERIRFTSPHPAEFTDDVILAMAETPAVCPHLHMPLQSGSDQILKAMRRSYRRD 316

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
            Y  IID++R+  P  AI++D IVGFPGET+ DF  T+D+V K  +  AF+F+YSPR GT
Sbjct: 317 RYLGIIDKVRAAIPHAAITTDIIVGFPGETEHDFEQTLDVVQKARFTSAFTFQYSPRPGT 376

Query: 374 PGSNMLEQVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLI----EKHGKEKG 426
           P ++M +Q+ +NV   + ERL+ LQ+++    +  N + VG   E+L+     +      
Sbjct: 377 PAADMPDQIPKNVVQQRFERLVALQERI---SLESNRSLVGTRQELLVVAGEGRKNATTA 433

Query: 427 KLVGRS--PWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGE 466
           ++ GR+    L     +S + ++  GD++ V ITD     L  +
Sbjct: 434 RISGRARDGRLVHFRPDSADGSVRPGDLVDVEITDAAPHHLIAD 477


>gi|116073345|ref|ZP_01470607.1| hypothetical protein RS9916_32882 [Synechococcus sp. RS9916]
 gi|116068650|gb|EAU74402.1| hypothetical protein RS9916_32882 [Synechococcus sp. RS9916]
          Length = 473

 Score =  282 bits (721), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 178/458 (38%), Positives = 269/458 (58%), Gaps = 31/458 (6%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           +++ ++GCQMN  DS RM  +  S GY    +  DADL++ NTC IR+ A +KVYS+LGR
Sbjct: 29  YWITTFGCQMNKADSERMAGILESMGYCEATAELDADLVLYNTCTIRDNAEQKVYSYLGR 88

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
               +  R +   +L +VVAGCVAQ EGE +LRR P +++V+GPQ   RL  LL +   G
Sbjct: 89  ----QAQRKRSNPNLTLVVAGCVAQQEGESLLRRVPELDLVMGPQHANRLETLLTQVEAG 144

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           ++VV T+       E L+       R   + A++ +  GC++ CT+CVVP  RG E SR 
Sbjct: 145 QQVVATEE--HHILEDLTTA----RRDSAICAWVNVIYGCNERCTYCVVPSVRGKEQSRM 198

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG------EKCTFSDLLYSLSEIKGL 260
              +  E   L   G  EITLLGQN++A+ G+ L G       + T +DLL+ + ++ G+
Sbjct: 199 PEAIKLEMEGLAAQGFKEITLLGQNIDAY-GRDLPGITPEGRRQHTLTDLLHFVHDVDGV 257

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+ TSHPR  ++ LI A  DL  L  + H+P QSG + +L+SM R +T   YR+IID
Sbjct: 258 ERIRFATSHPRYFTERLIDACADLPKLCEHFHIPFQSGDNDVLRSMARGYTVERYRRIID 317

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           RIR   PD ++S+D IV FPGETD  +R T+DL+++IG+ Q  +  YSPR  TP ++   
Sbjct: 318 RIRERMPDASLSADVIVAFPGETDAQYRRTLDLIEEIGFDQVNTAAYSPRPNTPAADWDN 377

Query: 381 QVDENVKAERL----LCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWL 435
           Q+ E VK  RL      +++  RE+   ++    G+I EVL E  + K+  +L+GR+   
Sbjct: 378 QLPEEVKVARLQEINALVERCARERNARYD----GRIEEVLAEGINPKDPSQLMGRTRTN 433

Query: 436 QSVVLNSKNHN-----IGDIIKVRITDVKISTLYGELV 468
           +    +++  +      GD+++VRI  V+  +L G  V
Sbjct: 434 RLTFFSAQGADGCSFKPGDLVQVRIDAVRSFSLSGTPV 471


>gi|302386432|ref|YP_003822254.1| RNA modification enzyme, MiaB family [Clostridium saccharolyticum
           WM1]
 gi|302197060|gb|ADL04631.1| RNA modification enzyme, MiaB family [Clostridium saccharolyticum
           WM1]
          Length = 482

 Score =  281 bits (720), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 165/441 (37%), Positives = 266/441 (60%), Gaps = 24/441 (5%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           F + ++GCQMN  DS +++ +  + G+   ++ ++AD ++ NTC +RE A ++VY  LG 
Sbjct: 48  FHIATFGCQMNSRDSEKLQGILEAIGFVEHDT-EEADFVLYNTCTVRENANDRVYGRLGY 106

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELL-ERA 143
           + +LK    K+   +++ + GC+ Q E    +I +    V+++ G    ++L EL+ ER 
Sbjct: 107 LNSLK----KKNPYMMIALCGCMMQEEEVVAKIKKSYRFVDIIFGTHNIFKLAELMYERL 162

Query: 144 RFGKRVVD----TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
              K VVD    TD  VED        +  Y+ K GV     I  GC+ FC++C+VPY R
Sbjct: 163 EEKKMVVDIWEGTDRIVED-----LPTERKYSFKSGVN----IMFGCNNFCSYCIVPYVR 213

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G E SRS   +++E ++L+++GV EI LLGQNVN++ GK LD    +F++LL  + +++G
Sbjct: 214 GRERSRSPKDILEEIKQLVNDGVVEIMLLGQNVNSY-GKTLDT-PVSFAELLTQIDQVEG 271

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           L R+R+ TSHP+D+SD LIKA  +   +  +LHLP+QSGS RILK MNR++T  +Y +++
Sbjct: 272 LERIRFMTSHPKDLSDELIKAMKNSKKVCHHLHLPLQSGSSRILKVMNRKYTKEQYLELV 331

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
           ++IR+  PDI++++D IVGFPGET++DF  T+++V K+ +  AF+F YS R GTP + M 
Sbjct: 332 EKIRTAIPDISLTTDIIVGFPGETEEDFNETLEVVRKVRFDSAFTFIYSKRTGTPAAKME 391

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSV 438
           EQV E     R   L  +++          V  + +VL E+ +  E+G L GR     +V
Sbjct: 392 EQVSEEAIKNRFDRLLDEVKNISSEVCGREVHTVQKVLAEEVNDHEEGLLTGRLGNNTTV 451

Query: 439 VLNSKNHNIGDIIKVRITDVK 459
                +  IG I+ V + + +
Sbjct: 452 HFKGDSSLIGKIVDVYLDESR 472


>gi|228471870|ref|ZP_04056641.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Capnocytophaga gingivalis
           ATCC 33624]
 gi|228276800|gb|EEK15503.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Capnocytophaga gingivalis
           ATCC 33624]
          Length = 481

 Score =  281 bits (720), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 170/463 (36%), Positives = 261/463 (56%), Gaps = 30/463 (6%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ +++SYGCQMN  DS  +  +    G+     + +ADL+++NTC +REKA + +   L
Sbjct: 24  RKLYIESYGCQMNFSDSEIVASILHKVGFNTTEELHEADLVLINTCSVREKAEQTIRKRL 83

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            +   +K  +      + V V GC+A+    + L    IV++VVGP  Y  LP LL+   
Sbjct: 84  EQFNAVKRHKPA----MKVGVLGCMAERLKHQFLEEEHIVDLVVGPDAYKDLPNLLQEVD 139

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G+  V+   S ++ +  +S +    N   GVTAF++I  GCD  CTFC+VP+TRG E S
Sbjct: 140 NGRDAVNVLLSRDETYADISPIRLNSN---GVTAFVSITRGCDNMCTFCIVPFTRGRERS 196

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNA--WRGKGL--DGEKCT---------FSDLL 251
           R    ++ E  +L   G  E+TLLGQNV++  W G GL  D EK +         F+ LL
Sbjct: 197 RDPHSIIHEIEELWARGFREVTLLGQNVDSYLWYGGGLKKDFEKASDIQKVTAVNFAKLL 256

Query: 252 YSLSEIKGLVRLRYTTSHPRDMS----DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307
             ++     +R+R++TS+P+DM+    D + K H     +  Y+HLPVQSGS+RILK+MN
Sbjct: 257 DMVATQFPKMRIRFSTSNPQDMTLDVIDTMAKHHN----ICKYIHLPVQSGSNRILKAMN 312

Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           R HT  EY  +ID IR   P+ AIS D I GFP ET++D + T+ L++ + Y   F F Y
Sbjct: 313 RLHTREEYFALIDGIRERIPECAISQDMITGFPTETEEDHQDTLSLMEYVKYDFGFMFAY 372

Query: 368 SPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG 426
           S R GT  +  + + V + VK  RL  +    ++  +    A VG+ +EVLIE + K+  
Sbjct: 373 SERPGTLAARKIADDVPDEVKKRRLTEIIDLQQKHSLLRTQAQVGKTVEVLIEGNSKKSD 432

Query: 427 K-LVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           +  +GR+     VV   +++ +GD + V+IT+   +TL GE V
Sbjct: 433 QEWMGRNTQNTVVVFPKEHYKVGDFVNVKITNCTSTTLIGEAV 475


>gi|294787007|ref|ZP_06752261.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Parascardovia denticolens
           F0305]
 gi|294485840|gb|EFG33474.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Parascardovia denticolens
           F0305]
          Length = 481

 Score =  281 bits (720), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 165/450 (36%), Positives = 262/450 (58%), Gaps = 38/450 (8%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD----DADLIVLNTCHIREKAAEKVYS 82
           ++V + GCQMNV+DS R+  +  S GY + N +     D DLIV+NTC +RE A+ ++Y 
Sbjct: 30  YYVHTLGCQMNVHDSERIAGVLESDGYVKANQVQIDSHDLDLIVMNTCAVRENASNRMYG 89

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            LG+   LK    +E   L + V GC+AQ + + I  R+P V+ V G +    L  LL++
Sbjct: 90  TLGQWAELK----RENPRLQIAVGGCMAQKDRQRITERAPWVDAVFGTKNIGSLTGLLDK 145

Query: 143 ARFGKR-----VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197
           AR  +R       D DY       +L +     +R   V+A++ I  GC+  CTFC+VP 
Sbjct: 146 ARAERRSQVQVATDLDYFPS----QLPV-----SRASRVSAWVAISMGCNNTCTFCIVPS 196

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257
            RG E  R    V+DE ++ +D G  E+TLLGQNVN++ G  + G++  FS LL +  +I
Sbjct: 197 VRGRERDRRPGDVLDEIQRCVDAGSKEVTLLGQNVNSY-GYSM-GDRYAFSKLLRACGKI 254

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
            GL R+R+T+ HP   +D +I+A  +   +M  LH+P+QSGSDRIL++M R +   ++  
Sbjct: 255 DGLERVRFTSPHPAAFTDDVIEAMAETPNVMHQLHMPLQSGSDRILRAMRRSYRTAKFMD 314

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
           I+ ++R+  PD  IS+D IVGFPGET++DF+ T+DL+ +  +A A++F+YSPR GTP + 
Sbjct: 315 ILGKVRAAMPDAQISTDVIVGFPGETEEDFQRTLDLISQARFASAYTFEYSPRPGTPAA- 373

Query: 378 MLEQVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG---KLVGR 431
           +L Q+  +V   +  RL  LQ+++ E+ +    A  G+ +EV++   G++ G   ++ GR
Sbjct: 374 LLPQIPADVMRDRYTRLHDLQEEITEEGLK---AFRGKEVEVMVTGQGRKDGNTHRITGR 430

Query: 432 SPWLQSVVLNSKN----HNIGDIIKVRITD 457
                 V +          +GD +   +TD
Sbjct: 431 EKTGTLVHIGPPEGYPAARVGDFVTCTVTD 460


>gi|306836314|ref|ZP_07469294.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Corynebacterium accolens
           ATCC 49726]
 gi|304567785|gb|EFM43370.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Corynebacterium accolens
           ATCC 49726]
          Length = 489

 Score =  281 bits (720), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 159/441 (36%), Positives = 243/441 (55%), Gaps = 31/441 (7%)

Query: 36  MNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRI 95
           MNV+DS R+  +    GY   +   + DLIV NTC +RE A +++Y  LG ++  K +  
Sbjct: 1   MNVHDSERISGLLEEAGYAAADEATEPDLIVFNTCAVRENADKRLYGTLGALKKTKENHP 60

Query: 96  KEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYS 155
                + + V GC+AQ + + +L  +P V+ V G      LP LLERAR  +   +    
Sbjct: 61  G----MQIAVGGCLAQKDKDTVLDNAPWVDAVFGTHNMAALPTLLERARHNE---EAQVE 113

Query: 156 VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEAR 215
           + D  E    V     R+     ++++  GC+  CTFC+VP  RG E  R    ++ E +
Sbjct: 114 IVDSLEAFPSVLPA-KRESAYAGWVSVSVGCNNTCTFCIVPSLRGKEEDRRPGDILAEVQ 172

Query: 216 KLIDNGVCEITLLGQNVNAWRGKGLDGE----KCTFSDLLYSLSEIKGLVRLRYTTSHPR 271
            L+D GV E+TLLGQNVNA+     D E    +  FS LL  + +I GL RLR+T+ HP 
Sbjct: 173 ALVDQGVSEVTLLGQNVNAYGVNFADPEMPRDRFAFSKLLREVGKIDGLERLRFTSPHPA 232

Query: 272 DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAI 331
           + +  +I A  +   + P LH+P+QSGSD++LK M R +   ++ +I+D +R   P+ AI
Sbjct: 233 EFTSDVIDAMAETPAVCPQLHMPLQSGSDKVLKDMRRSYRTKKFLRILDEVREKIPNAAI 292

Query: 332 SSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV---KA 388
           ++D IVGFPGET+ DF+ TMDLV +  +A AF+F+YSPR GTP + M  QV + V   + 
Sbjct: 293 TTDIIVGFPGETEVDFQDTMDLVRRARFASAFTFQYSPRPGTPAAEMENQVPKEVVQDRF 352

Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-------------GKLVGRSPWL 435
           ERL+ LQ  ++ ++   N   VG  +E+L++  G  K             G+LV  SP  
Sbjct: 353 ERLVALQDSIQAEE---NQKLVGTEVELLVQAEGGRKNDETHRMSGRARDGRLVHFSPID 409

Query: 436 QSVVLNSKNHNIGDIIKVRIT 456
            +    S     GD+++ ++T
Sbjct: 410 DNGADISVEIRPGDVVRTKVT 430


>gi|167758192|ref|ZP_02430319.1| hypothetical protein CLOSCI_00530 [Clostridium scindens ATCC 35704]
 gi|167664089|gb|EDS08219.1| hypothetical protein CLOSCI_00530 [Clostridium scindens ATCC 35704]
          Length = 492

 Score =  281 bits (720), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 170/452 (37%), Positives = 262/452 (57%), Gaps = 32/452 (7%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
            +++GCQMN  DS ++  +    GYE     D AD ++ NTC +RE A  +VY  LG+++
Sbjct: 61  ARTFGCQMNARDSEKLRGILEKIGYEEAPE-DVADFVIYNTCTVRENANTRVYGRLGQLK 119

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQ-AEGEEILRRS-PIVNVVVGPQTYYRLPELLERARFG 146
            LK    K+   +++ + GC+ Q  E  E LR+S   V+++ G    ++  EL+ +    
Sbjct: 120 PLK----KKNPHMMIGLCGCMMQEPEVVEKLRKSYRFVDIIFGTHNIFKFAELIVQRLES 175

Query: 147 KRVV-----DTDYSVED-KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           + +V     DTD  VED   ER      G N          I  GC+ FC++C+VPY RG
Sbjct: 176 QEMVIDIWKDTDKIVEDLPNERKYFFKSGVN----------IMFGCNNFCSYCIVPYVRG 225

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E SR    ++ E  +L+ +GV E+ LLGQNVN++ GK L+ E  +F+ LL  + +I+GL
Sbjct: 226 RERSRDPKAIIREIERLVADGVVEVMLLGQNVNSY-GKNLE-EPMSFARLLTEIEKIEGL 283

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+ TSHP+D+SD LI+  G+   +  +LHLP+QSGS RIL+ MNRR+T  +Y  ++D
Sbjct: 284 ERIRFMTSHPKDLSDELIEVMGNSKKICKHLHLPIQSGSSRILEKMNRRYTKEQYLTLVD 343

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           +IR   PDI++++D IVGFPGET++DF+ T+D+V K+ Y  AF+F YS R GTP + M +
Sbjct: 344 KIRKAVPDISLTTDIIVGFPGETEEDFQETLDVVRKVRYDSAFTFIYSKRTGTPAAAMED 403

Query: 381 QVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GRSPWLQ 436
           Q+ E+V   + +RLL   + +  Q  S ++ CV      L+E   +    +V GR     
Sbjct: 404 QIPEDVVKDRFDRLLREVQAIAAQVCSVHEGCVQT---ALVEAKSEHDDSMVTGRLSNNL 460

Query: 437 SVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            V     +  IG ++ VR+++ K     GE V
Sbjct: 461 LVHFKGSSELIGQLVDVRLSECKGFYYLGEQV 492


>gi|296117712|ref|ZP_06836296.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Corynebacterium
           ammoniagenes DSM 20306]
 gi|295969443|gb|EFG82684.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Corynebacterium
           ammoniagenes DSM 20306]
          Length = 488

 Score =  281 bits (720), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 159/441 (36%), Positives = 251/441 (56%), Gaps = 29/441 (6%)

Query: 36  MNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRI 95
           MNV+DS R+  +    GY       + DL+V NTC +RE A +++Y  LG ++ +K +  
Sbjct: 1   MNVHDSERISGLLEEAGYIAAEQEAEPDLVVFNTCAVRENADKRLYGSLGALKKVKENH- 59

Query: 96  KEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYS 155
                + + V GC+AQ + + ++  +P V+ V G      LP LLERAR  ++       
Sbjct: 60  ---PGMQIAVGGCLAQKDKDTVVSNAPWVDAVFGTHNMAALPTLLERARHNEKA---QVE 113

Query: 156 VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEAR 215
           + D  E    V     R+     +++I  GC+  CTFC+VP  RG E  R    ++ E +
Sbjct: 114 IVDSLEAFPSVLPA-KRESSYAGWVSISVGCNNTCTFCIVPSLRGKEEDRRPGDILAEVQ 172

Query: 216 KLIDNGVCEITLLGQNVNAW----RGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPR 271
            L+D GV E+TLLGQNVN++        L  +K  FS LL ++  I+GL RLR+T+ HP 
Sbjct: 173 ALVDQGVTEVTLLGQNVNSYGVNFADPDLPRDKFAFSKLLRAVGAIEGLERLRFTSPHPA 232

Query: 272 DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAI 331
           + +  +I A  +   + P LH+P+QSGSD++LK+M R +   ++ +I+D +R   P  AI
Sbjct: 233 EFTSDVIDAMAETPAVCPQLHMPLQSGSDKVLKNMRRSYRTKKFMRIVDEVREKMPHAAI 292

Query: 332 SSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV---KA 388
           ++D IVGFPGET++DF+ TMD+V +  ++ A++F+YSPR GTP + M EQV ++V   + 
Sbjct: 293 TTDIIVGFPGETEEDFQGTMDIVRRARFSAAYTFQYSPRPGTPAATMDEQVPKHVVQERF 352

Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK---EKGKLVGRSPWLQSV----VLN 441
           ERL+ LQ ++  ++   N   +G  +E+L++  G+   EK +L GR+   + V    V N
Sbjct: 353 ERLIKLQDEIAAEE---NAKLIGTDVELLVQAEGRKNNEKHRLSGRARDGRLVHFAPVAN 409

Query: 442 ----SKNHNIGDIIKVRITDV 458
               S+    GDI+   ITD 
Sbjct: 410 GEDISEQIRPGDIVHTTITDA 430


>gi|317504443|ref|ZP_07962422.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella salivae DSM
           15606]
 gi|315664431|gb|EFV04119.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella salivae DSM
           15606]
          Length = 444

 Score =  281 bits (720), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 161/453 (35%), Positives = 267/453 (58%), Gaps = 21/453 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ ++++YGCQMNV DS  +  +    GY+   + ++AD I LNTC +RE A  K+Y+ L
Sbjct: 3   KKLYIETYGCQMNVADSEVVASVMKMAGYDVCENEEEADAIFLNTCSVRENAENKIYNRL 62

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             +    ++  K+G  L++ V GC+A+   +++++     ++V GP +Y  LP ++    
Sbjct: 63  DTL----HAEQKKGRQLILGVLGCMAERVKDDLIKNHH-ASLVCGPDSYLNLPTMIAECE 117

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G   VDTD S  + +  +     G NR   V+ F++I  GC+ FC +C+VPYTRG E S
Sbjct: 118 LGHAAVDTDLSTTETYRDVLPQRIGGNR---VSGFVSIMRGCNNFCHYCIVPYTRGRERS 174

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK----CTFSDLLYSLSEIKGL 260
           R +  ++ E + L D G  E+TLLGQNVN++ G   +G++     +F++LL  +++    
Sbjct: 175 RDVESILAEVKDLHDKGFKEVTLLGQNVNSY-GLLPNGKRPENGTSFAELLRKVAQSVPD 233

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
           +R+R+TTS+P DMS+ ++ A  D   L  ++H P QSGS++ILK MNR++T  +Y   + 
Sbjct: 234 MRVRFTTSNPEDMSEDILHAIADEPNLCKHIHFPAQSGSNKILKLMNRKYTREDYLDKVA 293

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT-PGSNML 379
            I+ + P   +++D  VG+  ET++D   T+ LV ++GY  AF FKYS R GT    ++ 
Sbjct: 294 AIKRIIPGCGLTTDIFVGYHNETEEDQEQTLSLVKEVGYDSAFMFKYSERPGTYAAKHLA 353

Query: 380 EQVDENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWL 435
           + V E VK  R   L+ LQ  +  +Q   N    G+   +L E+   K++  L+GR+   
Sbjct: 354 DNVPEEVKIARLNQLIHLQTAISAEQ---NKKDEGREFVILTERFSKKDRHHLMGRTEQN 410

Query: 436 QSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           ++V++   NH+IG+ IKVRIT    +TL+GE +
Sbjct: 411 KAVIVEKGNHHIGEFIKVRITGSTSATLFGEEI 443


>gi|331001788|ref|ZP_08325310.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Lachnospiraceae oral
           taxon 107 str. F0167]
 gi|330412762|gb|EGG92145.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Lachnospiraceae oral
           taxon 107 str. F0167]
          Length = 475

 Score =  281 bits (720), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 164/449 (36%), Positives = 266/449 (59%), Gaps = 16/449 (3%)

Query: 15  SQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIRE 74
           S+ +D+   P  + V ++GCQMN  DS ++  +    GY    + +DADL++ NTC +RE
Sbjct: 26  SRAMDKGAYPT-YKVVTFGCQMNARDSEKLSGILSGIGYTEAENEEDADLVLFNTCTVRE 84

Query: 75  KAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQA--EGEEILRRSPIVNVVVGPQT 132
            A +++Y   GR+  LK S+ K   D++V + GC+ Q   E E+I +    V++V G   
Sbjct: 85  NANDRLY---GRVGQLKKSKEK-NHDMIVGICGCMMQEAEEVEKIKKSYRHVDLVFGTHN 140

Query: 133 YYRLPELL-ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCT 191
            Y+L E+L +     K++++   S +   E+L        R+    + + I  GC+ FC+
Sbjct: 141 IYKLAEILFDHLTTKKQIINVMESADMIVEKLP-----NKRQYAFKSGVNITFGCNNFCS 195

Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLL 251
           +C+VPY RG E SR   +++DE + L+ +GV EI LLGQNVN++ G+GL+ E+ +F+ LL
Sbjct: 196 YCIVPYVRGRERSRKPEEIIDEIKTLVADGVKEIMLLGQNVNSY-GRGLE-EEISFAGLL 253

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
             ++EI+GL RLR+ T HP+D+SD +I+   +   +  +LHLP+QSGS  ILK MNR +T
Sbjct: 254 ERIAEIEGLERLRFMTPHPKDLSDEVIEVMKNNKKICKHLHLPLQSGSSAILKKMNRVYT 313

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
             +Y  ++ RI++  PDI++++D IVGFPGET+ DF  T+++V ++ Y  AF+F YS R 
Sbjct: 314 KEDYLNLVKRIKTAIPDISLTTDIIVGFPGETEGDFLDTLEVVKEVRYDSAFTFIYSKRS 373

Query: 372 GTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVG 430
           GTP + M EQVD     +R   L K +++          G+ +  L+E K+   +G L G
Sbjct: 374 GTPAAKMEEQVDPKAIKDRFDRLLKTVQDIAAENTKKNEGKCMPALVEGKNEHMEGYLTG 433

Query: 431 RSPWLQSVVLNSKNHNIGDIIKVRITDVK 459
           +     +V    +   IG+I+ V + + K
Sbjct: 434 KLENNLTVHFKGQERLIGEIVDVILDEAK 462


>gi|291528925|emb|CBK94511.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Eubacterium rectale
           M104/1]
          Length = 479

 Score =  281 bits (719), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 168/448 (37%), Positives = 252/448 (56%), Gaps = 16/448 (3%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P  +FVK++GCQMN  DS ++  +    GY   N  + +D IV NTC +RE A  KVY  
Sbjct: 40  PMTYFVKTFGCQMNARDSEKLVGILEQIGYVEGND-EHSDFIVYNTCTVRENANNKVYGR 98

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELL- 140
           LG ++N K    K+   + + + GC+ Q     E I +    V++V G    ++  E+L 
Sbjct: 99  LGYLQNYK----KKNPLMKIALCGCMMQEPEVVENIKKHYKFVDIVFGTHNIFKFAEILC 154

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
                G +V+D         E L +      RK    + + I  GC+ FC++C+VPY RG
Sbjct: 155 NNIESGSQVIDIWKDTNQIVEDLPV-----KRKFSFKSGVNIMFGCNNFCSYCIVPYVRG 209

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E SR    ++ E  KL+ +GVCEI LLGQNVN++ GK LD    TF++LL  +++I+GL
Sbjct: 210 RERSREPKDIIREIEKLVADGVCEIMLLGQNVNSY-GKTLDN-PITFAELLREVNKIEGL 267

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+ TSHP+D+SD LI A  + D +  ++HLP+QSGS R+LK MNR +   +Y   + 
Sbjct: 268 KRIRFMTSHPKDLSDDLIMAIKECDKVCKHMHLPLQSGSSRVLKEMNRHYDKEKYLDEVK 327

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           R+R   PDIAI++D IVGFPGET++DF  TMD+V ++ Y  AF+F YS R GT  + M  
Sbjct: 328 RLREQIPDIAITTDIIVGFPGETEEDFLETMDVVKQVRYDSAFTFIYSKRTGTRAATMEN 387

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439
           QV ++V  +R   L K+++           G+++ VL E+   +K G + GR      V 
Sbjct: 388 QVPDDVVKDRFDRLLKEVQTISSEKAKCYEGKVVPVLAEEMDDQKDGYVTGRMDNNSIVH 447

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGEL 467
                  IG+I  V++ + +     GE+
Sbjct: 448 FPGTEDMIGNIYNVKLDECRGFYYMGEI 475


>gi|291536277|emb|CBL09389.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Roseburia intestinalis
           M50/1]
          Length = 496

 Score =  281 bits (719), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 173/463 (37%), Positives = 258/463 (55%), Gaps = 34/463 (7%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P  F V ++GCQMN  DS ++  +    G+   +S ++AD ++ NTC +RE A  KVY  
Sbjct: 50  PLTFHVSTFGCQMNARDSEKLVGILEKIGFVEEDS-EEADFVIYNTCTVRENANNKVYGR 108

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLE 141
           LG +   +    K+   +++ + GC+ Q     E+I +    VN++ G    Y+  EL+ 
Sbjct: 109 LGYLNGFQ----KKNPFMMIGLCGCMMQEPTVVEKIKQSYRFVNLIFGTHNIYKFAELIV 164

Query: 142 RAR----------FGKRVV-----DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGC 186
            A            G  +      DTD  VED       V+  Y+ K GV     I  GC
Sbjct: 165 TALENSFPEHSSGHGTSMTIDIWKDTDKIVED-----LPVERKYSFKSGVN----IMFGC 215

Query: 187 DKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT 246
           + FC++C+VPY RG E SR   +++ E  +L  +GV EI LLGQNVN++ GK L+ +  T
Sbjct: 216 NNFCSYCIVPYVRGRERSREPKEIIREIERLAADGVVEIMLLGQNVNSY-GKNLE-QPMT 273

Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306
           F+ LL  + ++ G+ R+R+ TSHP+D+SD LI+   +   +  +LHLP+QSGS RILK M
Sbjct: 274 FAQLLQEIEKVDGIERIRFMTSHPKDLSDDLIEVMKNSKKICKHLHLPLQSGSSRILKLM 333

Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
           NRR+    Y +++D+IR+  PDIA+++D IVGFPGET++DF  TMD+V K+ Y  AF+F 
Sbjct: 334 NRRYDKEHYLELVDKIRAAVPDIALTTDIIVGFPGETEEDFEETMDVVRKVRYDSAFTFI 393

Query: 367 YSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG 426
           YS R GTP + M  Q+ E+V   R   L K+++        A  GQ + VLIE+  ++  
Sbjct: 394 YSKRTGTPAAVMENQIPEDVIKARFDRLLKEVQTISAEKAGALTGQTLPVLIEEKNEQDA 453

Query: 427 KLV-GRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            LV GR      V L      IG I+ V++ + K     GE +
Sbjct: 454 SLVTGRLSNNSVVHLPGTEDMIGKIVDVKLLECKGFYYMGESI 496


>gi|227824423|ref|ZP_03989255.1| RNA modification enzyme [Acidaminococcus sp. D21]
 gi|226904922|gb|EEH90840.1| RNA modification enzyme [Acidaminococcus sp. D21]
          Length = 441

 Score =  281 bits (719), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 162/447 (36%), Positives = 248/447 (55%), Gaps = 20/447 (4%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           + + +YGCQMN  DS          GYE     + AD++V+NTC +RE A +K+   +G 
Sbjct: 5   YAIINYGCQMNESDSEHYAGQLLDLGYEASADYEHADVVVINTCCVRENAEKKILGKIGE 64

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           ++ LK    +E  D+++ VAGC+AQ  G+++ ++ P V++V+G         +L+    G
Sbjct: 65  MKRLK----RENPDMVLCVAGCMAQEWGKDLQKKYPQVDLVLGTAHVNNFSSILQNHLAG 120

Query: 147 KRVVDTDYSVEDKFERLSIV----DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
                     E  ++ L+I+    +G + RK    A++ I  GC+ FCT+C+VPY RG E
Sbjct: 121 HG------RAESVYDDLTIMPQEFEGSFVRKSSFAAWVPIMYGCNNFCTYCIVPYVRGRE 174

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLV 261
            SRS   +  E  K +  G  E TLLGQNVN++   G D GE+  FS LL  +  I G+ 
Sbjct: 175 RSRSAEAICHEIEKAVALGYKEFTLLGQNVNSY---GKDRGEEEGFSKLLELVDAIPGVE 231

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+RY TSHPRDMS+ +++   +   +    H+PVQSGS RI+K+MNR +    Y ++++ 
Sbjct: 232 RIRYMTSHPRDMSEAVVRTIAESQHICKNFHIPVQSGSSRIMKAMNRGYDRERYLKLVET 291

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           IR   PD  I++D IVGFPGET+ DF  T+DL+  + Y  AF+F YSPR GTP +    Q
Sbjct: 292 IRRCVPDAVITTDLIVGFPGETEKDFEETLDLLRTVEYDDAFTFIYSPRKGTPAAGFGAQ 351

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           V + VK ERL  L     E  +  N   VG+ + V++E   K    ++        +VL 
Sbjct: 352 VPDAVKHERLDRLMALQNEICLKRNKRLVGRTLAVMVEGPSKSNPAMLSGRTDGNDLVLW 411

Query: 442 SK--NHNIGDIIKVRITDVKISTLYGE 466
            K  +H  GD++ V++   +   + G+
Sbjct: 412 PKIRDHAPGDLVNVKMERAQTWLIRGK 438


>gi|294790986|ref|ZP_06756144.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Scardovia inopinata
           F0304]
 gi|294458883|gb|EFG27236.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Scardovia inopinata
           F0304]
          Length = 483

 Score =  281 bits (719), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 156/410 (38%), Positives = 245/410 (59%), Gaps = 31/410 (7%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVN----SMDDADLIVLNTCHIREKAAEKVYS 82
           ++V + GCQMNV+DS R+  +  + GY +        +D DLIV+NTC +RE A+ ++Y 
Sbjct: 31  YYVHTLGCQMNVHDSERIAGVLEADGYVKATRRQIENNDLDLIVMNTCAVRENASNRMYG 90

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            LG+   LK    +E   L + V GC+AQ +   I++R+P V+ V G +    L  LL++
Sbjct: 91  TLGQWAELK----RERPGLQIAVGGCMAQKDRRRIVQRAPWVDAVFGTKNIGSLTGLLKK 146

Query: 143 ARFGKR-----VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197
           AR   R       D DY       +L        R   V++++ I  GC+  CTFC+VP 
Sbjct: 147 ARLENRSQVQVATDLDYFPS----QLPAA-----RASRVSSWVAISVGCNNTCTFCIVPS 197

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257
            RG E  R    ++DE ++ +D G  EITLLGQNVN++      G++  FS LL +  +I
Sbjct: 198 VRGKERDRRPGDILDEIQRCVDAGAKEITLLGQNVNSYGYS--TGDRYAFSKLLRACGKI 255

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
            GL R+R+T+ HP   +D +I+A  + D +M  LH+P+QSGSDRIL++M R +    ++ 
Sbjct: 256 DGLKRVRFTSPHPAAFTDDVIEAMAETDNVMHQLHMPLQSGSDRILRAMRRSYRVSRFKG 315

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
           IID++R+  PD  I++D IVGFPGET+DDF+ TMDL+ +I ++ A++F+YSPR GTP + 
Sbjct: 316 IIDKVRAAMPDAQITTDIIVGFPGETEDDFQQTMDLLRQIRFSSAYTFEYSPRPGTPAA- 374

Query: 378 MLEQVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE 424
           ++EQ+   V   +  RL  +Q+ +  Q++      +G+ +EVL+   G++
Sbjct: 375 LMEQIPPEVMRDRYTRLHDMQETITAQEMQ---KFLGRTVEVLVTGQGRK 421


>gi|323448466|gb|EGB04364.1| hypothetical protein AURANDRAFT_32629 [Aureococcus anophagefferens]
          Length = 494

 Score =  281 bits (719), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 175/464 (37%), Positives = 262/464 (56%), Gaps = 27/464 (5%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           + + + GCQMN  DS R+E      G         A+++VLNTC IRE A  KVYS++G 
Sbjct: 30  YAMVTMGCQMNAADSERLEGSLRQLGLVEAPDPKLANVVVLNTCSIREHAETKVYSYVG- 88

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR-F 145
               +  R + G D+ +VVAGCVAQ EG  +LRR+P V+VV+GPQ   RLP++LERA   
Sbjct: 89  ---PQAKRKRNGEDVTIVVAGCVAQQEGARLLRRAPEVDVVMGPQYANRLPDVLERAMVH 145

Query: 146 GKRVVDTDYSVEDKFERLSI------VDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           G++V  T  S        +             R  GV A++TI  GC++ CT+CVVP TR
Sbjct: 146 GEQVAATSASYGATSTSSAASGAALDAPTAPRRASGVVAWVTITHGCNERCTYCVVPNTR 205

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK- 258
           G+E SR+  +++ E   L + G  E+TLLGQNV+A+ G+ +   +  F DLL +++++  
Sbjct: 206 GVEQSRAPDEILAEIDDLGNRGYREVTLLGQNVDAY-GRDMRPRR-HFHDLLAAVADVAR 263

Query: 259 --GLVRLRYTTSHPRDMSDCLIKAHGDL-DVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
             G +R+R+ TSHPR ++D +I A  D  DV+MP  H+P QSG D +L+ M R +TA  Y
Sbjct: 264 RHGDMRVRFVTSHPRYITDAVIDAVADHGDVIMPVFHMPAQSGDDAMLRLMGRGYTADRY 323

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
           R I+ +IR   PD  ISSDFIVG PGE++  F AT+ L+D + +    +  YSPR GTP 
Sbjct: 324 RSIVAKIRKRLPDATISSDFIVGCPGESEAAFEATLALMDDVEFDACMTAAYSPRPGTPM 383

Query: 376 SNMLEQV--------DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKG 426
           ++             D++VK +RL  +  K         +  +G++  VL+E ++ +   
Sbjct: 384 AHWDGAADAFATLGCDDDVKEDRLRRINAKSDAHVKRRAERYLGRVEPVLVEQRNTRAPT 443

Query: 427 KLVGRSPWLQSVVLNSKNHN-IGDIIKVRITDVKISTLYGELVV 469
           ++VGR+   + V       + +G  + V IT+    +L G  VV
Sbjct: 444 QVVGRTRGNKLVFFEGDADDLVGRTVDVEITEANTFSLVGVRVV 487


>gi|257452434|ref|ZP_05617733.1| MIAB protein [Fusobacterium sp. 3_1_5R]
 gi|317058977|ref|ZP_07923462.1| adenosine tRNA methylthiotransferase [Fusobacterium sp. 3_1_5R]
 gi|313684653|gb|EFS21488.1| adenosine tRNA methylthiotransferase [Fusobacterium sp. 3_1_5R]
          Length = 435

 Score =  281 bits (719), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 166/443 (37%), Positives = 255/443 (57%), Gaps = 16/443 (3%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V +YGCQMNV +S +M+ +F + GYE    + ++D I LNTC +RE AA ++Y  LG + 
Sbjct: 6   VITYGCQMNVNESAKMKKIFENLGYEITEDIRESDAIFLNTCTVREGAATQIYGKLGELM 65

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE--RARFG 146
            +K  R       ++ V GC AQ +G+E+L++ P++++V+G Q   RLP+ +E    +  
Sbjct: 66  QVKADR-----GSIIGVTGCFAQEQGKELLKKFPVIDIVMGNQNIGRLPQAIENIENQTE 120

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           K VV T++  ED        D G ++    TA + I  GC+ FCTFC+VPY RG E S  
Sbjct: 121 KHVVFTNH--EDDLPPRLDADFGSDQ----TASIAISYGCNNFCTFCIVPYVRGRERSVP 174

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
           L ++V +  + +  G  EI LLGQNVN++     +G+  TF+ LL  + +++G   +R+ 
Sbjct: 175 LEEIVRDVDQYVKKGAKEIMLLGQNVNSYGHDFKNGD--TFAKLLTEICKVEGDFIVRFV 232

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
           + HPRD +D +I+     D +   LHLP+QSGS +ILK MNR +T  +Y  +  +I+   
Sbjct: 233 SPHPRDFTDDVIEVIAKEDKIAKCLHLPLQSGSSQILKRMNRGYTKEQYLALAHKIQDKI 292

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
             +A+++D IVGFPGET++DF  T+++V +I Y  AF F YS R GT  + M EQ+ E++
Sbjct: 293 SGVALTTDIIVGFPGETEEDFLDTLEVVREINYDNAFMFMYSIRQGTRAATMKEQIPEDI 352

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRSPWLQSVVLNSKNH 445
           K ERL  L           +    G+ + VL+E   K+ K  L GR+   + V+      
Sbjct: 353 KKERLQRLMDVQARCSYKESQKYQGKTVRVLVEGESKKNKEVLSGRTSTNKIVLFQGPIS 412

Query: 446 NIGDIIKVRITDVKISTLYGELV 468
             G  + V I + K  TLYG+LV
Sbjct: 413 LKGSFVDVEIYECKTWTLYGKLV 435


>gi|229817424|ref|ZP_04447706.1| hypothetical protein BIFANG_02686 [Bifidobacterium angulatum DSM
           20098]
 gi|229785213|gb|EEP21327.1| hypothetical protein BIFANG_02686 [Bifidobacterium angulatum DSM
           20098]
          Length = 484

 Score =  281 bits (718), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 160/408 (39%), Positives = 248/408 (60%), Gaps = 27/408 (6%)

Query: 23  VPQR----FFVKSYGCQMNVYDSLRMEDMFFSQGY----ERVNSMDDADLIVLNTCHIRE 74
           VP R    F+V + GCQMNV+DS R+  +    GY    E      D DLIV+NTC +RE
Sbjct: 23  VPARGKGVFYVHTLGCQMNVHDSERIAGVLEQAGYVPATEEQYLDHDIDLIVMNTCAVRE 82

Query: 75  KAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYY 134
            AAE++Y  +G   N+K  R     +L + V GC+AQ + E+I +++P V+ V G +   
Sbjct: 83  NAAERMYGTIGLWANMKRER----PNLQIAVGGCMAQLDREKIAKKAPWVDAVFGTKNIG 138

Query: 135 RLPELLERARF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC 193
            LP+LL++AR  G   V     +     +L       +R   V++++ I  GC+  CTFC
Sbjct: 139 SLPQLLDQARIQGHAQVKVQEDLNYFPSQLPT-----DRASKVSSWVAISVGCNNTCTFC 193

Query: 194 VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS 253
           +VP TRG E  R    ++ E R+ +D G  EITLLGQNVN++ G G+ G++  FS LL +
Sbjct: 194 IVPTTRGKEHDRRPGDILAEIRQCVDEGAKEITLLGQNVNSF-GYGI-GDRFAFSKLLRA 251

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
             +I+GL R+R+T+ HP   +D +I A  +   +M  LH P+QSGSDRIL++M R + + 
Sbjct: 252 CGDIEGLERVRFTSPHPAAFTDDVIAAMAETPNVMHQLHFPLQSGSDRILRAMRRSYRSA 311

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
           ++  I+ +IR   PD  IS+D IVGFPGET++DF+ T+ +V++  ++ AF+F YSPR GT
Sbjct: 312 KFLDILRKIRQAMPDAQISTDIIVGFPGETEEDFQETLRVVEEARFSSAFTFIYSPRPGT 371

Query: 374 PGSNMLEQVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLI 418
           P + M EQ+  +V   + +RL+ LQ+++ E+ +   +   G+ +EV++
Sbjct: 372 PAAQM-EQLPHDVVQDRFDRLVALQERITEENLKTFE---GRDVEVMV 415


>gi|332884749|gb|EGK05005.1| Dimethylallyladenosine tRNA methylthiotransferase miaB
           [Dysgonomonas mossii DSM 22836]
          Length = 456

 Score =  281 bits (718), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 161/446 (36%), Positives = 254/446 (56%), Gaps = 9/446 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F+++YGCQMNV DS  +  +    GY   + +++AD + +NTC IR+ A ++V   L
Sbjct: 18  KKLFIETYGCQMNVADSEVVASVMQMDGYTMTDKLEEADAVFVNTCSIRDNAEQRVIQRL 77

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
                LK    K+  ++++ V GC+A+   EE L     V+VVVGP  Y  LP L+  A 
Sbjct: 78  DYFNALKR---KKKPNMIIGVLGCMAERVKEE-LHDKHHVDVVVGPDAYLDLPNLVGAAE 133

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G + ++   S  + ++ +  +  G N    ++ F++I  GCDK C++C+VPYTRG E S
Sbjct: 134 NGNKAINVQLSKTETYKDVIPLRIGGNH---ISGFISIMRGCDKVCSYCIVPYTRGRERS 190

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           RS   +++E   L D G  E TLLGQNVN++R    DG    F  LL   ++    +R+R
Sbjct: 191 RSPQSILNELENLRDKGFKEATLLGQNVNSYRFTNEDGSVVDFPALLEMTAKAAPKMRIR 250

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +TTS+P DM+D  ++     D L  ++HLPVQSGS ++L  M R++    Y   I+ I+ 
Sbjct: 251 FTTSYPTDMTDETLEVIAKYDNLCKFIHLPVQSGSSKMLNVMKRKYDREWYLNRIEAIKR 310

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE-QVD 383
           + P   IS+D + GF  ET++D + T+ L+ ++ +  AF FKYS R GT  S  LE  + 
Sbjct: 311 IIPGCGISTDIMCGFHSETEEDQQETLSLMREVCFDSAFMFKYSERPGTYASKKLEDDIP 370

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVLNS 442
           E+VK +RL  +     E  +  N   VG++ EVL+E   K  + +L GR+   + V+ + 
Sbjct: 371 EDVKIKRLQEIIDLQNECSLESNKRDVGKVFEVLVEGFSKRSREQLFGRTSQNKVVIFDK 430

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
            NH IGD + V++T    +TL+GE +
Sbjct: 431 GNHRIGDFVTVKVTGNTSATLFGEAI 456


>gi|37523584|ref|NP_926961.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Gloeobacter
           violaceus PCC 7421]
 gi|81708482|sp|Q7NE65|MIAB_GLOVI RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|35214589|dbj|BAC91956.1| glr4015 [Gloeobacter violaceus PCC 7421]
          Length = 441

 Score =  281 bits (718), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 164/439 (37%), Positives = 260/439 (59%), Gaps = 20/439 (4%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           ++GCQMN  DS RM       GY  V+  D ADL++ NTC IR+ A +KVYS+LG+    
Sbjct: 16  TFGCQMNKADSERMAGALTHLGYRIVDESDTADLVLFNTCTIRDNAEQKVYSYLGQ---- 71

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
           +  R +    + +V+AGCVAQ EGE++LRR P +++V+GPQ   RL +LLER   G++VV
Sbjct: 72  QARRKQRDPHITLVLAGCVAQQEGEKLLRRVPELDLVMGPQHVNRLSDLLERVAEGEQVV 131

Query: 151 DTDYSVEDKFERLSIVDGGYNRKR--GVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
            T        E + I++     +R   VTA+  I  GC++ CT+C+VP  RG E SR+  
Sbjct: 132 AT--------EPIEILEDITKPRRDSAVTAWANIIYGCNEGCTYCIVPSVRGREQSRTPE 183

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
            +  E  +L  +G  E+TLLGQN++A+ G+ +       + LL  +    G+ RLR+ TS
Sbjct: 184 AIKAEICELGASGYKEVTLLGQNIDAY-GRDIG---TNLASLLRFIHNAPGIERLRFATS 239

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
           HPR  SD LI    +L  +  + H+P QSG + +L+ M R +T  +YR II++IR++ PD
Sbjct: 240 HPRYFSDELIATCAELPKVCEHFHIPFQSGDNEVLRRMARGYTHEKYRAIIEKIRAILPD 299

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
            AIS+D IVGFPGET+  F  ++ LVD++ +    +  YSPR GTP +    Q+D+ VK 
Sbjct: 300 AAISADLIVGFPGETEAQFENSLRLVDELEFDALNTAAYSPRPGTPAARWPGQLDDEVKQ 359

Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSVVLNSKNHNI 447
           +RL    + + ++    +   +G+  +VL+E+ + +++ ++VGR+   + V    +   +
Sbjct: 360 DRLQRTNRLVAQKAFERSQRYLGRTEQVLVEETNPRDRSQVVGRTRTNRLVFFAGELAKL 419

Query: 448 -GDIIKVRITDVKISTLYG 465
            G ++ V+IT  +  +L G
Sbjct: 420 RGQLVDVQITAARAFSLTG 438


>gi|295110088|emb|CBL24041.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Ruminococcus obeum
           A2-162]
          Length = 478

 Score =  281 bits (718), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 169/456 (37%), Positives = 261/456 (57%), Gaps = 31/456 (6%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P  + + ++GCQMN   S  +  +    GY R ++ ++AD+++ NTC +RE A  KVY  
Sbjct: 41  PLTYCLTTFGCQMNEKQSEAVAGIMDEIGYVRQDN-EEADVVLYNTCTVRENANLKVYGR 99

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELL- 140
           LG + +LK+       D+ +++ GC+ Q +   ++I +  P V++V G    ++  EL  
Sbjct: 100 LGHLHSLKD----RNPDMKIILFGCMMQEQHVVDKIRKSYPFVDLVFGTHNIFKFAELFY 155

Query: 141 ERARFGKRVVD----TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
           E  +  +++++    TD  VED        +  Y  K GV     I  GC+ FC++C+VP
Sbjct: 156 EMLQSDQQIINIWEGTDQIVED-----LPTERNYTFKSGVN----IMFGCNNFCSYCIVP 206

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256
           Y RG E SR    +V E ++L+ +GV E+ LLGQNVN++ GK L+    TF+ LL  L +
Sbjct: 207 YVRGRERSREPEAIVKEVKRLVADGVSEVMLLGQNVNSY-GKTLE-HPVTFAQLLEMLED 264

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           ++GL R+R+ TSHP+D+SD LI+       +  +LHLP+QSGS RILK MNR +   +Y 
Sbjct: 265 VEGLKRIRFMTSHPKDLSDELIETMAKSKKICHHLHLPLQSGSSRILKIMNRCYDKEKYL 324

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
            ++++IR   PDI++++D IVGFPGET++DFR T+D+V K GY  AF+F YS R  TP +
Sbjct: 325 NLVEKIRKAIPDISLTTDIIVGFPGETEEDFRETLDVVAKCGYDTAFTFLYSKRSDTPAA 384

Query: 377 NMLEQVDENVKAER----LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS 432
            M  QV ++V  ER    L  +QK+ R +   F       + EVL+E+  KEKG   GR+
Sbjct: 385 AMENQVPQDVAKERFNRLLALVQKEGRTRSSRFE----ASVQEVLVEEESKEKGIFTGRT 440

Query: 433 PWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            +   V        +G  +KV + +       G LV
Sbjct: 441 EYNLLVHFPGSADLLGKYVKVSLDECHGFYYMGSLV 476


>gi|332828703|gb|EGK01395.1| Dimethylallyladenosine tRNA methylthiotransferase miaB
           [Dysgonomonas gadei ATCC BAA-286]
          Length = 456

 Score =  280 bits (717), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 163/446 (36%), Positives = 258/446 (57%), Gaps = 9/446 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F+++YGCQMNV DS  +  +    GY   + ++DAD + +NTC IR+ A ++V   L
Sbjct: 18  KKLFIETYGCQMNVADSEVVASVMQMDGYTMTDKLEDADAVFVNTCSIRDNAEQRVIQRL 77

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
                LK    K+  ++++ V GC+A+   EE L     V+VVVGP  Y  LP L+  A 
Sbjct: 78  DYFNALKR---KKKPNMIIGVLGCMAERVKEE-LHDKHHVDVVVGPDAYLDLPNLVGAAE 133

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G++ ++   S  + ++ +  +  G N    ++ F++I  GCDK C++C+VPYTRG E S
Sbjct: 134 SGEKAINVVLSKTETYKDVIPLRIGGNH---ISGFISIMRGCDKVCSYCIVPYTRGRERS 190

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R    +++E   L D G  E+TLLGQNVN++R +  DG    FS LL  ++     +R+R
Sbjct: 191 RLPQSILNEVADLRDKGFKEVTLLGQNVNSYRYENEDGTVVDFSRLLEIVALEAPKMRIR 250

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +TTS+P DM+D  ++     D L  ++HLPVQSGS R+L  M R++    Y   I+ I+ 
Sbjct: 251 FTTSYPTDMTDETLEVIAKYDNLCKFIHLPVQSGSSRMLNVMKRKYDREWYLNRIEAIKR 310

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE-QVD 383
           + P   +S+D + GF  ET++D + T+ L+ ++ +  AF FKYS R GT  +  LE  V 
Sbjct: 311 IIPGCGLSTDIMCGFHSETEEDQQETLSLMREVCFDSAFMFKYSERPGTFAAKKLEDDVP 370

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVLNS 442
           E+VK +RL  + +   E  +  N   +G++ EVL+E   K  K +L GR+   + V+ + 
Sbjct: 371 EDVKIKRLQEIIELQNECSLESNKRDIGKVFEVLVEGFSKRSKEQLFGRTSQNKVVIFDK 430

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
            +H IGD + VRIT    +TL+GE +
Sbjct: 431 GSHRIGDFVTVRITGNTSATLFGEAI 456


>gi|154488819|ref|ZP_02029668.1| hypothetical protein BIFADO_02127 [Bifidobacterium adolescentis
           L2-32]
 gi|154082956|gb|EDN82001.1| hypothetical protein BIFADO_02127 [Bifidobacterium adolescentis
           L2-32]
          Length = 484

 Score =  280 bits (717), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 159/400 (39%), Positives = 243/400 (60%), Gaps = 23/400 (5%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGY----ERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           F+V + GCQMNV+DS R+  +  + GY    E      D DLIV+NTC +RE AAE++Y 
Sbjct: 31  FYVHTLGCQMNVHDSERIAGVLEADGYVPATEEQYLNHDIDLIVMNTCAVRENAAERMYG 90

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +G    LK  R     +L + V GC+AQ + E+I +++P V+ V G +    LP+LL++
Sbjct: 91  TIGLWAELKRER----PNLQIAVGGCMAQLDREKIAKKAPWVDAVFGTKNIGSLPQLLDQ 146

Query: 143 ARF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           A   G   V     +     +L       +R   V++++ I  GC+  CTFC+VP TRG 
Sbjct: 147 ACIEGHAQVKVQEELNYFPSQLPT-----DRASKVSSWVAISVGCNNTCTFCIVPTTRGK 201

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E  R    ++ E R+ +D G  E+TLLGQNVN++ G G+ G++  FS LL +  EI GL 
Sbjct: 202 EHDRRPGDILAEIRQCVDEGAKEVTLLGQNVNSF-GYGI-GDRFAFSKLLRACGEIDGLE 259

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+T+ HP   +D +I A  +   +M  LH P+QSGSDRIL++M R + + ++  I+ +
Sbjct: 260 RVRFTSPHPAAFTDDVIAAMAETPNVMHQLHFPLQSGSDRILRAMRRSYRSAKFLDILRK 319

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           IR   PD  IS+D IVGFPGET++DF+ T+ +V++  +A AF+F YSPR GTP + M EQ
Sbjct: 320 IREAMPDAQISTDIIVGFPGETEEDFQETLRVVEEARFASAFTFIYSPRPGTPAAEM-EQ 378

Query: 382 VDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLI 418
           V  +V   + ERL+ LQ+++ E+ +   +   G+ +EV++
Sbjct: 379 VPHDVVQDRFERLVALQERITEENLKTFE---GRDVEVMV 415


>gi|238924014|ref|YP_002937530.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Eubacterium rectale ATCC
           33656]
 gi|238875689|gb|ACR75396.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Eubacterium rectale ATCC
           33656]
          Length = 479

 Score =  280 bits (717), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 169/449 (37%), Positives = 253/449 (56%), Gaps = 18/449 (4%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDD-ADLIVLNTCHIREKAAEKVYS 82
           P  +FVK++GCQMN  DS ++  +    GY  V   D+ +D IV NTC +RE A  KVY 
Sbjct: 40  PMTYFVKTFGCQMNARDSEKLVGILEQIGY--VEGTDEHSDFIVYNTCTVRENANNKVYG 97

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELL 140
            LG ++N K    K+   + + + GC+ Q     E I +    V++V G    ++  E+L
Sbjct: 98  RLGYLQNYK----KKNPLMKIALCGCMMQEPEVVENIKKHYKFVDIVFGTHNIFKFAEIL 153

Query: 141 -ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
                 G +V+D         E L +      RK    + + I  GC+ FC++C+VPY R
Sbjct: 154 CNNIESGSQVIDIWKDTNQIVEDLPV-----KRKFSFKSGVNIMFGCNNFCSYCIVPYVR 208

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G E SR    ++ E  KL+ +GVCEI LLGQNVN++ GK LD    TF++LL  +++I+G
Sbjct: 209 GRERSREPKDIIREIEKLVADGVCEIMLLGQNVNSY-GKTLDN-PITFAELLREVNKIEG 266

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           L R+R+ TSHP+D+SD LI A  + D +  ++HLP+QSGS R+LK MNR +   +Y   +
Sbjct: 267 LKRIRFMTSHPKDLSDDLIMAIKECDKVCKHMHLPLQSGSSRVLKEMNRHYDKEKYLDEV 326

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            R+R   PDIAI++D IVGFPGET++DF  TMD+V ++ Y  AF+F YS R GT  + M 
Sbjct: 327 KRLREQIPDIAITTDIIVGFPGETEEDFLETMDVVKQVRYDSAFTFIYSKRTGTRAATME 386

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSV 438
            QV ++V  +R   L K+++           G+++ VL E+   +K G + GR      V
Sbjct: 387 NQVPDDVVKDRFDRLLKEVQTISSEKAKCYEGKVVPVLAEEMDDQKDGYVTGRMDNNSIV 446

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGEL 467
                   IG+I  V++ + +     GE+
Sbjct: 447 HFPGTEDMIGNIYNVKLDECRGFYYMGEI 475


>gi|291524754|emb|CBK90341.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Eubacterium rectale DSM
           17629]
          Length = 479

 Score =  280 bits (717), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 169/449 (37%), Positives = 253/449 (56%), Gaps = 18/449 (4%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDD-ADLIVLNTCHIREKAAEKVYS 82
           P  +FVK++GCQMN  DS ++  +    GY  V   D+ +D IV NTC +RE A  KVY 
Sbjct: 40  PMTYFVKTFGCQMNARDSEKLVGILEQIGY--VEGADEHSDFIVYNTCTVRENANNKVYG 97

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELL 140
            LG ++N K    K+   + + + GC+ Q     E I +    V++V G    ++  E+L
Sbjct: 98  RLGYLQNYK----KKNPLMKIALCGCMMQEPEVVENIKKHYKFVDIVFGTHNIFKFAEIL 153

Query: 141 -ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
                 G +V+D         E L +      RK    + + I  GC+ FC++C+VPY R
Sbjct: 154 CNNIESGSQVIDIWKDTNQIVEDLPV-----KRKFSFKSGVNIMFGCNNFCSYCIVPYVR 208

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G E SR    ++ E  KL+ +GVCEI LLGQNVN++ GK LD    TF++LL  +++I+G
Sbjct: 209 GRERSREPKDIIREIEKLVADGVCEIMLLGQNVNSY-GKTLDN-PITFAELLREVNKIEG 266

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           L R+R+ TSHP+D+SD LI A  + D +  ++HLP+QSGS R+LK MNR +   +Y   +
Sbjct: 267 LKRIRFMTSHPKDLSDDLIMAIKECDKVCKHMHLPLQSGSSRVLKEMNRHYDKEKYLDEV 326

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            R+R   PDIAI++D IVGFPGET++DF  TMD+V ++ Y  AF+F YS R GT  + M 
Sbjct: 327 KRLREQIPDIAITTDIIVGFPGETEEDFLETMDVVKQVRYDSAFTFIYSKRTGTRAATME 386

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSV 438
            QV ++V  +R   L K+++           G+++ VL E+   +K G + GR      V
Sbjct: 387 NQVPDDVVKDRFDRLLKEVQTISSEKAKCYEGKVVPVLAEEMDDQKDGYVTGRMDNNSIV 446

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGEL 467
                   IG+I  V++ + +     GE+
Sbjct: 447 HFPGTEDMIGNIYNVKLDECRGFYYMGEI 475


>gi|299142064|ref|ZP_07035198.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella oris C735]
 gi|298576526|gb|EFI48398.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella oris C735]
          Length = 444

 Score =  280 bits (717), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 161/453 (35%), Positives = 267/453 (58%), Gaps = 21/453 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ ++++YGCQMNV DS  +  +    GY+   + ++AD I LNTC IRE A  K+Y+ L
Sbjct: 3   KKLYIETYGCQMNVADSEVVASVMKMAGYDVCENEEEADAIFLNTCSIRENAENKIYNRL 62

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             +    ++  K+G  L++ V GC+A+   +++++     ++V GP +Y  LP ++    
Sbjct: 63  DTL----HAEQKKGRQLILGVLGCMAERVKDDLIKNHH-ASLVCGPDSYLNLPTMIAECE 117

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G   VDT+ S  + +  +     G NR   V+ F++I  GC+ FC +C+VPYTRG E S
Sbjct: 118 LGHATVDTNLSTTETYRNVLPQRIGGNR---VSGFVSIMRGCNNFCHYCIVPYTRGRERS 174

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK----CTFSDLLYSLSEIKGL 260
           R +  ++ E + L D G  E+TLLGQNVN++ G   +G++     +F++LL  +++    
Sbjct: 175 RDVESILAEVKDLHDKGFKEVTLLGQNVNSY-GLLPNGKRPENGTSFAELLRKVAQSVPD 233

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
           +R+R+TTS+P DM++ ++ A  +   L  ++H P QSGSD+ILK MNR++T  EY   + 
Sbjct: 234 MRVRFTTSNPEDMTEDILHAIAEEPNLCKHIHFPAQSGSDKILKLMNRKYTREEYLDKVA 293

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML- 379
            I+ + P   +++D  VG+  ET++D + T+ LV ++G+  AF FKYS R GT  +  L 
Sbjct: 294 AIKRIIPGCGLTTDIFVGYHDETEEDQQLTLSLVKEVGFDSAFMFKYSERPGTYAAKHLP 353

Query: 380 EQVDENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWL 435
           + V E VK  R   L+ LQ  +  +Q   N    G    +L E+   K++  L+GR+   
Sbjct: 354 DNVSEEVKIARLNELIHLQTAISGEQ---NKKDEGSEFVILTERFSKKDRNHLMGRTEQN 410

Query: 436 QSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           ++V++   NH+IG+ IKVRIT    +TL+GE +
Sbjct: 411 KAVIIEKGNHHIGEFIKVRITGSTSATLFGEEI 443


>gi|323486941|ref|ZP_08092256.1| hypothetical protein HMPREF9474_04007 [Clostridium symbiosum
           WAL-14163]
 gi|323399713|gb|EGA92096.1| hypothetical protein HMPREF9474_04007 [Clostridium symbiosum
           WAL-14163]
          Length = 503

 Score =  280 bits (716), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 169/447 (37%), Positives = 258/447 (57%), Gaps = 30/447 (6%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P   F+ ++GCQMN +DS ++  +    G+    S +++D ++ NTC +RE A ++VY  
Sbjct: 57  PMTCFISTFGCQMNAHDSEKLMGILLEAGFTEGQS-EESDFVLYNTCTVRENANQRVYGR 115

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQ-AEGEEILRRS-PIVNVVVGPQTYYRLPELLE 141
           LG + +LK    K+   +++ + GC+ Q  E  E L++S   V+++ G    Y+L ELL 
Sbjct: 116 LGYLNSLK----KKNPHMIISLCGCMMQEPEVVEKLKKSYRFVDIIFGTHNIYKLAELLS 171

Query: 142 RARFGKRVV-----DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
               G+++V     DT   VED             RK    + + I  GC+ FC++C+VP
Sbjct: 172 ERIDGRKMVIDIWKDTAKIVEDL---------PSERKYPFKSGVNIMFGCNNFCSYCIVP 222

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256
           Y RG E SR+   ++ E   L+ +GV EI LLGQNVN++ GK L+ +  TF++LL  + +
Sbjct: 223 YVRGRERSRNPEDIIREIEALVASGVVEIMLLGQNVNSY-GKNLE-KPITFAELLQQIEQ 280

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           I+GL R+R+ TSHP+D+SD LI+       +  +LHLP+QSGS RIL  MNR++T  +Y 
Sbjct: 281 IEGLERIRFMTSHPKDLSDELIEVMKHSRKICRHLHLPLQSGSSRILNLMNRKYTKEQYL 340

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
            +  +I+   PDI++++D IVGFPGET++DF  TMD+V ++ Y  AF+F YS R GTP +
Sbjct: 341 TLAAKIKEAIPDISLTTDIIVGFPGETEEDFEETMDVVQRVRYDSAFTFIYSKRTGTPAA 400

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDAC---VGQIIEVLIEK-HGKEKGKLVGRS 432
           +M +QV E+V  ER     + L+E Q      C   V  + EVL+E+    E+G L GR 
Sbjct: 401 SMEDQVPEDVVKER---FDRLLKEVQAISAQVCGREVHTVQEVLVEEPDDHEEGFLTGRL 457

Query: 433 PWLQSVVLNSKNHNIGDIIKVRITDVK 459
                V        IG I+KV +   K
Sbjct: 458 SNNTIVHFPGSRELIGKIVKVYLEQSK 484


>gi|317125291|ref|YP_004099403.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Intrasporangium calvum
           DSM 43043]
 gi|315589379|gb|ADU48676.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Intrasporangium calvum
           DSM 43043]
          Length = 510

 Score =  280 bits (716), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 168/461 (36%), Positives = 264/461 (57%), Gaps = 38/461 (8%)

Query: 17  IVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSM------DDADLIVLNTC 70
           +  + ++P+ + V+++GCQMNV+DS R+  +  + GY  V ++      D AD++V NTC
Sbjct: 1   MTTENMMPKTYDVRTHGCQMNVHDSERLAGLLETAGYVDVATVPVAQRPDVADVVVFNTC 60

Query: 71  HIREKAAEKVYSFLGRIR--NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVV 128
            +RE A  K+Y  LG++R   L+N       D+ + V GC+AQ +   I+ R+P V+VV 
Sbjct: 61  AVRENADNKLYGNLGQLRPAKLRNP------DMQIAVGGCMAQKDRSTIVERAPWVDVVF 114

Query: 129 GPQTYYRLPELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCD 187
           G      LP LL RA   KR  V+   S+E     L        R    + +++I  GC+
Sbjct: 115 GTHNIGSLPALLARAAHNKRAEVEILESLETFPSTLPT-----RRDSAYSGWVSISVGCN 169

Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCT 246
             CTFC+VP  RG E  R   +++ E   L+  GV EITLLGQNVN +   G++ G++  
Sbjct: 170 NTCTFCIVPSLRGTEQDRRPGEILAEIEALVAQGVIEITLLGQNVNTY---GVEFGDRLA 226

Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306
           F  LL +  EI+GL R+R+T+ HP   +D +I A  +   +MP LH+P+QSGSD +L+ M
Sbjct: 227 FGKLLRACGEIEGLERVRFTSPHPAAFTDDVILAMAETPNVMPSLHMPLQSGSDTVLRQM 286

Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
            R + +  +  I+D +R   PD AI++D IVGFPGET++DF+ T+D+V +  ++ AF+F+
Sbjct: 287 RRSYRSARFLGILDTVREHIPDAAITTDIIVGFPGETEEDFQGTLDVVRQARFSSAFTFQ 346

Query: 367 YSPRLGTPGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIE---- 419
           YS R GTP + M +QV + V  E   RLL LQ+++   +   N    G+ +EVL+     
Sbjct: 347 YSIRPGTPAATMSDQVPKAVVQERFDRLLALQEEVSWAE---NRRFEGREVEVLVAPAEG 403

Query: 420 KHGKEKGKLVGRSPWLQ----SVVLNSKNHNIGDIIKVRIT 456
           +   E  ++ GR+   +    +V   S+    GD++ V +T
Sbjct: 404 RKDSETQRMSGRARDNRLVHFAVPDGSERPRPGDLVTVGVT 444


>gi|323691989|ref|ZP_08106237.1| hypothetical protein HMPREF9475_01100 [Clostridium symbiosum
           WAL-14673]
 gi|323503912|gb|EGB19726.1| hypothetical protein HMPREF9475_01100 [Clostridium symbiosum
           WAL-14673]
          Length = 500

 Score =  280 bits (716), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 169/447 (37%), Positives = 258/447 (57%), Gaps = 30/447 (6%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P   F+ ++GCQMN +DS ++  +    G+    S +++D ++ NTC +RE A ++VY  
Sbjct: 54  PMTCFISTFGCQMNAHDSEKLMGILLEAGFTEGQS-EESDFVLYNTCTVRENANQRVYGR 112

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQ-AEGEEILRRS-PIVNVVVGPQTYYRLPELLE 141
           LG + +LK    K+   +++ + GC+ Q  E  E L++S   V+++ G    Y+L ELL 
Sbjct: 113 LGYLNSLK----KKNPHMIISLCGCMMQEPEVVEKLKKSYRFVDIIFGTHNIYKLAELLS 168

Query: 142 RARFGKRVV-----DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
               G+++V     DT   VED             RK    + + I  GC+ FC++C+VP
Sbjct: 169 ERIDGRKMVIDIWKDTAKIVEDL---------PSERKYPFKSGVNIMFGCNNFCSYCIVP 219

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256
           Y RG E SR+   ++ E   L+ +GV EI LLGQNVN++ GK L+ +  TF++LL  + +
Sbjct: 220 YVRGRERSRNPEDIIREIEALVASGVVEIMLLGQNVNSY-GKNLE-KPITFAELLQQIEQ 277

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           I+GL R+R+ TSHP+D+SD LI+       +  +LHLP+QSGS RIL  MNR++T  +Y 
Sbjct: 278 IEGLERIRFMTSHPKDLSDELIEVMKHSRKICRHLHLPLQSGSSRILNLMNRKYTKEQYL 337

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
            +  +I+   PDI++++D IVGFPGET++DF  TMD+V ++ Y  AF+F YS R GTP +
Sbjct: 338 TLAAKIKEAIPDISLTTDIIVGFPGETEEDFEETMDVVQRVRYDSAFTFIYSKRTGTPAA 397

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDAC---VGQIIEVLIEK-HGKEKGKLVGRS 432
           +M +QV E+V  ER     + L+E Q      C   V  + EVL+E+    E+G L GR 
Sbjct: 398 SMEDQVPEDVVKER---FDRLLKEVQAISAQVCGREVHTVQEVLVEEPDDHEEGFLTGRL 454

Query: 433 PWLQSVVLNSKNHNIGDIIKVRITDVK 459
                V        IG I+KV +   K
Sbjct: 455 SNNTIVHFPGSRELIGKIVKVYLEQSK 481


>gi|183221201|ref|YP_001839197.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Leptospira
           biflexa serovar Patoc strain 'Patoc 1 (Paris)']
 gi|189911292|ref|YP_001962847.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Leptospira
           biflexa serovar Patoc strain 'Patoc 1 (Ames)']
 gi|229890556|sp|B0S9E2|MIAB_LEPBA RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|229890557|sp|B0SS31|MIAB_LEPBP RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|167775968|gb|ABZ94269.1| 2-methylthioadenine synthetase [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167779623|gb|ABZ97921.1| Putative tRNA-i(6)A37 modification enzyme MiaB [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Paris)']
          Length = 458

 Score =  280 bits (716), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 172/467 (36%), Positives = 274/467 (58%), Gaps = 28/467 (5%)

Query: 15  SQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIRE 74
           SQ +   I   + +V++YGCQMN YDS  ++++F  + YE  N ++++D+I LNTC +RE
Sbjct: 8   SQTLTPTIQLGKVYVETYGCQMNEYDSGIVKELFRKEHYETTNVVEESDIIFLNTCAVRE 67

Query: 75  KAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYY 134
            A  K+Y  L  +  LK    K+  +L++ V GC+AQ  GE++  +   ++++VGP  Y 
Sbjct: 68  NAHAKIYGRLQSLGYLK----KKNPNLVIGVLGCMAQNLGEDLFHQELPLDLIVGPDNYR 123

Query: 135 RLPELLERARFGKRVVD-TDYSVEDKFERLS--IVDGGYNRKRGVTAFLTIQEGCDKFCT 191
            LPEL++  R G++ V  T  S  + ++ L   +V+G       + AF+TI  GC+ FCT
Sbjct: 124 TLPELIQNIRNGEKDVQLTRLSRSETYDELEPKVVNG-------IQAFVTIMRGCNNFCT 176

Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLL 251
           FCVVPYTRG E SR    ++ E ++L + GV ++TLLGQNVN++  +  D     F  L+
Sbjct: 177 FCVVPYTRGRERSREPKSIIHEIKQLQEMGVKQVTLLGQNVNSYSYESYD-----FCALV 231

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
            S+ +   + R+R+T+ HP+D  D LI      D     +H+P+Q+GS ++L+ M R +T
Sbjct: 232 ESILKETTIERVRFTSPHPKDFPDHLISLMAKEDRFSSQIHMPLQAGSSKVLRDMKRSYT 291

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
             EY  ++ +I+SV PDI I+SD IVGFPGET+++F  T+++V K+ +  ++ FKYS R 
Sbjct: 292 KEEYLDLVKKIQSVIPDIGITSDIIVGFPGETEEEFLETLEVVKKVKFDMSYMFKYSERE 351

Query: 372 GTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLV 429
           GT      ++ V E VK+ RL+ L +   +  +  N + +G+I  +LIE   K+ K +L 
Sbjct: 352 GTIAKRKFIDDVPEEVKSRRLIELVELQTKISLEKNTSKIGKIFSILIENTSKKSKQELC 411

Query: 430 GRSPWLQSVVL-------NSKNHNIGDIIKVRITDVKISTLYGELVV 469
           GRS   + VV           +  IG  + V I     +TL G+L+V
Sbjct: 412 GRSHCGRMVVFPIPEGMSQDLSDWIGKTVNVLIEQATSATLKGKLIV 458


>gi|310779250|ref|YP_003967583.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Ilyobacter polytropus DSM
           2926]
 gi|309748573|gb|ADO83235.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Ilyobacter polytropus DSM
           2926]
          Length = 437

 Score =  280 bits (716), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 158/445 (35%), Positives = 261/445 (58%), Gaps = 24/445 (5%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           +YGCQMNV +S +++ +    GY+    + ++D + LNTC +RE AA ++Y  LG ++++
Sbjct: 9   TYGCQMNVNESAKIKRILQDMGYDITEDVSESDAVFLNTCTVREGAATQIYGKLGELKHI 68

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
           K  R      +++ V GC AQ +GEE+ ++   +++V+G Q   ++P+ +E+   G    
Sbjct: 69  KEKR-----GMIIGVTGCFAQEQGEELAKKVKAIDIVMGNQNIGKIPQAIEKIESG---- 119

Query: 151 DTDY--SVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           D  Y   V D+ E    +D  ++ K+  T++ TI  GC+ FCT+C+VPY RG E S  + 
Sbjct: 120 DFKYVIYVGDEDELPPRLDADFDSKK--TSYSTITYGCNNFCTYCIVPYVRGRERSVPMD 177

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
           Q++DE +  ++ G  EI LLGQNVN++ GK  +  K  F+ LL  + +I+G   +R+ + 
Sbjct: 178 QLLDEIKGFVEKGSKEIILLGQNVNSY-GKDFEN-KDNFAKLLEEICKIEGEFIVRFMSP 235

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
           HPRD +D LI+     D +   +HLP+Q+GS R+L  MNR +   EY  + ++I+   P 
Sbjct: 236 HPRDFTDELIEVIAKNDKIARSMHLPIQAGSSRVLGLMNRGYKKEEYIALAEKIKRSIPG 295

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
            +I++D IVGFPGET++DF  T+D+  ++ +  A+ F YSPR GT  + M  Q+D+  K 
Sbjct: 296 SSITTDVIVGFPGETEEDFLDTIDVAKRVKFENAYMFMYSPRKGTKAAEMDGQIDQKTKK 355

Query: 389 E---RLLCLQKKL-REQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
           E   RL+ +Q  + +EQ VS+    +G I  VL E   ++   ++        VVL   +
Sbjct: 356 ERLHRLIEVQNAISKEQSVSY----IGSIQRVLAEGPSRKNPDVMCARTSTNKVVLFKGD 411

Query: 445 HNI-GDIIKVRITDVKISTLYGELV 468
             + G+ I ++ITD    TLYG++V
Sbjct: 412 PELEGEFINLKITDANTWTLYGDIV 436


>gi|282856153|ref|ZP_06265436.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Pyramidobacter piscolens
           W5455]
 gi|282585912|gb|EFB91197.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Pyramidobacter piscolens
           W5455]
          Length = 435

 Score =  280 bits (716), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 166/443 (37%), Positives = 255/443 (57%), Gaps = 14/443 (3%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQG-YERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           F +K YGCQMN YD+ ++     ++G YE   + + AD I+   C IR+KA  KV+S LG
Sbjct: 4   FAMKVYGCQMNQYDADKIRTALVARGAYE--TAEEGADAIIFIGCSIRDKAEHKVWSELG 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                   R ++    +V + GC+AQ  G ++ RR P + VV GP+    +P+ LE A  
Sbjct: 62  HY----EERWRKERRPVVAMTGCIAQNVGVDMSRRYPWIRVVSGPRHIGLVPDALETAMS 117

Query: 146 G-KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
           G +++V  D   +D  E   +      R+    A + I  GCD FCT+C+VPY RG   S
Sbjct: 118 GDEKIVLLD---DDPRELHELRFAPLERQFPWKASVMISHGCDNFCTYCIVPYVRGRFAS 174

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           RS  +++ EA +L++ GV EI LLGQNV+ + GK LD  + +F+DLL  ++ IKGL RLR
Sbjct: 175 RSPREIMSEAEQLVEGGVKEICLLGQNVDTY-GKDLD--RYSFADLLNDVAHIKGLERLR 231

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           + TS+P D +  ++ A      + P ++LP+Q+GSDRILK+MNRR+T  EY +++D IR 
Sbjct: 232 FMTSYPTDFTKDVVDAIAGNANICPAINLPIQAGSDRILKAMNRRYTVEEYAKVVDCIRC 291

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             P++ ++SD IVGFP ET+DDF  +M+ +++  + Q  +  YS R GTP + M +QV E
Sbjct: 292 GLPEVGLTSDLIVGFPSETEDDFACSMEALERFRFDQVHTAAYSRRQGTPAAAMKDQVPE 351

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
           +VK  RL  + +   E     N   VG+   VL++    +   L GR+P  + ++     
Sbjct: 352 SVKNRRLNDVNRLQTEIAKDINKKLVGRRYRVLVDGRALKGNLLQGRNPADKVILFEGGE 411

Query: 445 HNIGDIIKVRITDVKISTLYGEL 467
             IG  + V +T     +L G++
Sbjct: 412 SVIGTFVDVEVTAADSWSLKGKI 434


>gi|227499453|ref|ZP_03929564.1| tRNA 2-methylthioadenine synthetase [Anaerococcus tetradius ATCC
           35098]
 gi|227218515|gb|EEI83758.1| tRNA 2-methylthioadenine synthetase [Anaerococcus tetradius ATCC
           35098]
          Length = 448

 Score =  280 bits (716), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 165/450 (36%), Positives = 262/450 (58%), Gaps = 21/450 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + + + ++GCQMN +DS R+  +  S GY+++   + AD I+ NTC +RE A  K+Y  +
Sbjct: 14  KTYNITTFGCQMNEHDSERISYILESLGYKKIQDRNKADFILFNTCLVRENAELKLYGQV 73

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
             ++ LK    KE  D ++ V+GC+ Q     + I+ +   V+++ G +    L +L+ R
Sbjct: 74  SSLKKLK----KENPDKIIAVSGCMMQTSTARQVIIDKHKEVDIIFGTKNINSLADLIFR 129

Query: 143 -ARFGKRVVD--TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
                +RV+D  TD +V+D F         YN      A++ I  GCD FC++C+VP +R
Sbjct: 130 YLETNERVIDISTD-NVKDDFVY-------YNTPNDFQAYVNIMTGCDNFCSYCIVPESR 181

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G E SR  S ++DE   L+  G  EITLLGQNVN++ G   D +  TF  LL  +S I+G
Sbjct: 182 GREESRRPSSILDEVENLVSRGYKEITLLGQNVNSY-GNRADFD-MTFPALLEKISHIEG 239

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           L RLR+TTSHP+D+SD LI    + D +  Y HLP+QSGS ++LK MNR++   +Y +  
Sbjct: 240 LKRLRFTTSHPKDLSDELIDVIKNNDNICNYFHLPLQSGSSKVLKDMNRKYDQEKYLERA 299

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            ++R   P IAIS+D IVG+P ET++DF+ T+ + +K+ Y  A++FK+SPR  T  +  L
Sbjct: 300 LKLREEIPSIAISTDIIVGYPTETEEDFQETLKVCEKVKYDSAYTFKFSPRPKTRAAK-L 358

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSV 438
           + +D+ +  +R   L   +       N+  +G+ +EVL+E   K   + L GR+   + V
Sbjct: 359 KTIDDAIVQDRFDRLLDTIYPIFNKKNEEYIGRTVEVLLESESKNNPQILTGRTDTFKLV 418

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            + +    IG  +KV+ITD    T+ G+L+
Sbjct: 419 HVKADKKLIGQFVKVKITDNTSFTISGDLI 448


>gi|269795611|ref|YP_003315066.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Sanguibacter keddieii DSM
           10542]
 gi|269097796|gb|ACZ22232.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Sanguibacter keddieii DSM
           10542]
          Length = 557

 Score =  280 bits (715), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 158/420 (37%), Positives = 247/420 (58%), Gaps = 30/420 (7%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDAD----LIVLNTCHIREKAAEKVYS 82
           + V++ GCQMNV+DS  M  M    GY+R  +   A     ++V+NTC +RE AA ++Y 
Sbjct: 30  YVVRTLGCQMNVHDSEHMSGMLEQAGYQRATAEAAARDEADVVVINTCAVRENAATRLYG 89

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            LG++   K  R      + + V GC+AQ +   I+ R+P V+VV G      LP LLER
Sbjct: 90  NLGQLAGAKKRR----AGMQIAVGGCLAQKDRSTIVERAPWVDVVFGTHNLDALPVLLER 145

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGV--TAFLTIQEGCDKFCTFCVVPYTRG 200
           AR        + +  +  E L +       +R      +++I  GC+  CTFC+VP+ RG
Sbjct: 146 ARH------NEAAQVEIAESLQVFPSTLPTRRESIYAGWVSISVGCNNTCTFCIVPHLRG 199

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKG 259
            E  R   QV+ E   L+  G  E+TLLGQNVN++   G++ G++  F+ LL +   I G
Sbjct: 200 KERDRRPGQVLAEVEALVAQGAVEVTLLGQNVNSY---GVEFGDRGAFAHLLRACGRIDG 256

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           L R+R+T+ HP   +D +I A  +   +MP LH+P+QSGSDR+L++M R + +  +  I+
Sbjct: 257 LERVRFTSPHPAAFTDDVIDAMAETHNVMPQLHMPLQSGSDRVLRAMRRSYRSDRFLGIL 316

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
           DR+R+  P+ AI++D IVGFPGET+DDF  T+ +V+   +A AF+F+YSPR GTP + + 
Sbjct: 317 DRVRAAIPEAAITTDLIVGFPGETEDDFAETLRVVEASRFASAFTFQYSPRPGTPAATLE 376

Query: 380 EQVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKG---KLVGRS 432
           +Q+ + V   + ERL+ LQ  +  ++ +     VG+ +EVL+ E  G++ G   +L GR+
Sbjct: 377 DQLPKEVVQERYERLMALQDAVSARESARQ---VGRTVEVLVTEGAGRKDGATHRLTGRA 433


>gi|111225071|ref|YP_715865.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Frankia alni
           ACN14a]
 gi|123142677|sp|Q0RDX2|MIAB_FRAAA RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|111152603|emb|CAJ64344.1| Putative 2-methylthioadenine synthetase [Frankia alni ACN14a]
          Length = 497

 Score =  280 bits (715), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 162/413 (39%), Positives = 239/413 (57%), Gaps = 20/413 (4%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           + V+++GCQMNV+DS R+  +  S GY       +AD++V NTC +RE A  ++Y  LG+
Sbjct: 6   YEVRTFGCQMNVHDSERLSGLLESAGYVPAPPGSEADVVVFNTCAVRENADNRLYGNLGQ 65

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           +  +K    K    + + V GC+AQ +   IL R+P V+VV G    +RLP LLERAR  
Sbjct: 66  LVPVK----KGHPGMQIAVGGCLAQKDRSTILDRAPWVDVVFGTHNLHRLPVLLERARHN 121

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
                      + F           R    +A+++I  GCD  CTFC+VP  RG E  R 
Sbjct: 122 AAAELEIAEALEVFPSSLPT----RRASHHSAWVSISVGCDNTCTFCIVPSLRGRERDRR 177

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
              V+ E   L+  G  EITLLGQNVN++ G+ L G+   F+ LL +   + GL R+R+T
Sbjct: 178 PGDVLAEVEALVGEGALEITLLGQNVNSY-GRSL-GDPGAFAKLLLACGRVDGLERVRFT 235

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
           + HPRD +D +I+A      +   LH+P+QSGSD +L+ M R +    +  I++R+R+  
Sbjct: 236 SPHPRDFTDDVIEAMAATPNVCHQLHMPLQSGSDDVLRRMRRSYRRDRFLGIVERVRAAM 295

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           PD AI++D IVGFPGET+ DF  T+D+V +  +A AF+F+YSPR GTP + M  Q+D   
Sbjct: 296 PDAAITTDIIVGFPGETEADFADTLDVVRQARFAGAFTFQYSPRPGTPAATMDGQIDRTT 355

Query: 387 KAE---RLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKE---KGKLVGRS 432
            AE   RL+ LQ ++   Q   N   VG+ +E+L+ E  G++    G+L GR+
Sbjct: 356 VAERYARLVALQDEVSWAQ---NRELVGRRVELLVAEGEGRKDDATGRLSGRA 405


>gi|219114795|ref|XP_002178193.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217409928|gb|EEC49858.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 455

 Score =  280 bits (715), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 161/413 (38%), Positives = 245/413 (59%), Gaps = 21/413 (5%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYER----VNSMDDADLIVLNTCHIREKAAEKVYS 82
           + +++ GCQMN+ DS R+E      G       V+     D+++LNTC IR+ A +KVYS
Sbjct: 15  YKLETMGCQMNMADSERIEGQLQGLGIRPLDPDVDKNKQPDVVILNTCSIRDHAEQKVYS 74

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
           ++G        R ++G D+ ++VAGCVAQ EGE +LRR P V++V+GPQ   R+ +LLE 
Sbjct: 75  YIG----PHAKRKRDGEDVTIIVAGCVAQQEGEALLRRVPEVDLVMGPQYANRIGDLLED 130

Query: 143 ARFGKRVVDTDYS--VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
              G +VV T+ S  +ED  +          R+  V A++ +  GC++ CTFC+VP TRG
Sbjct: 131 VSNGNQVVATEASHIMEDSTK--------PRRQSTVAAWVNVIYGCNERCTFCIVPTTRG 182

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
           +E SR    +V E  +L++ G  EITLLGQN++A+ G+ +  ++  FSDL+  + EI GL
Sbjct: 183 VEQSRPAESIVREVTELVEQGFKEITLLGQNIDAY-GRDMIPKR-KFSDLIRIVGEIPGL 240

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            RLR+ TSHPR MS  ++ +  +        H+P QSGS+ IL +M R HT  +Y  I+D
Sbjct: 241 DRLRFVTSHPRYMSLGVVDSVAETPAACECFHIPFQSGSNEILAAMGRGHTREKYLHIVD 300

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           RIRS  PD AI++D IVGFPGET++ F  T+ L+ ++ +    +  YSPR  TP +   +
Sbjct: 301 RIRSRIPDAAITADVIVGFPGETEEQFEDTLSLMREVVFDSVNTAAYSPRPNTPAAVWDD 360

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRS 432
           QVD+ VK  RL  +     E          G+ +E+L+E+   +   +++GR+
Sbjct: 361 QVDDAVKQNRLQRINALNLEHAAQRRARMKGRTVEILVEERNVRVPTQVMGRT 413


>gi|23465968|ref|NP_696571.1| (dimethylallyl)adenosine tRNA methylthiotransferase
           [Bifidobacterium longum NCC2705]
 gi|317482468|ref|ZP_07941485.1| MiaB family RNA modification enzyme [Bifidobacterium sp.
           12_1_47BFAA]
 gi|81753721|sp|Q8G4H4|MIAB_BIFLO RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|23326682|gb|AAN25207.1| widely conserved hypothetical protein in upf0004 [Bifidobacterium
           longum NCC2705]
 gi|316916128|gb|EFV37533.1| MiaB family RNA modification enzyme [Bifidobacterium sp.
           12_1_47BFAA]
          Length = 480

 Score =  280 bits (715), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 160/408 (39%), Positives = 251/408 (61%), Gaps = 26/408 (6%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGY-----ERVNSMDDADLIVLNTCHIREKAAEKVY 81
           F + + GCQMNV+DS R+  +  + GY     +++N  +D DL+VLNTC +RE AAE++Y
Sbjct: 27  FHIHTLGCQMNVHDSERIAGVLEANGYVPATEDQIND-NDLDLLVLNTCAVRENAAERMY 85

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             +GR   +K  R     +L + V GC+AQ + ++I   +P V+ V G +    LP+LL+
Sbjct: 86  GTIGRFNRVKLVR----PNLQIAVGGCMAQLDRKKIADTAPWVSAVFGTKNIEDLPKLLD 141

Query: 142 RARF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           + R  GK  V     +     +L        R   +++++ I  GC+  CTFC+VP TRG
Sbjct: 142 QNRATGKAQVQVTEQLRQFPSQLPAA-----RASRISSWVAISVGCNNTCTFCIVPTTRG 196

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E  R    ++DE R+ + +G  E+TLLGQNVN++ G G+ G++  FS LL +   I GL
Sbjct: 197 KEKDRRPGDILDEIRQCVADGAKEVTLLGQNVNSF-GYGI-GDRYAFSKLLRACGTIDGL 254

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+T+ HP   +D +I A  +   +M  LH P+QSGSDRIL++M R + + ++  I+ 
Sbjct: 255 ERVRFTSPHPAAFTDDVIAAMAETPNIMHQLHFPLQSGSDRILRAMRRSYRSAKFLDILG 314

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           RIR+  PD  IS+D IVGFPGET++DF+ TMD+V +  ++ AF+F YSPR GTP + M E
Sbjct: 315 RIRAAMPDAQISTDIIVGFPGETEEDFQQTMDVVRQARFSSAFTFIYSPRPGTPAAAM-E 373

Query: 381 QVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKE 424
           Q+  +V   + +RL+ LQ+++ E+ ++  +   G+ +EV+I  K GK+
Sbjct: 374 QIPRDVVQDRFDRLVALQEQITEENLATFE---GRDVEVMITGKLGKK 418


>gi|322691385|ref|YP_004220955.1| hypothetical protein BLLJ_1196 [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|320456241|dbj|BAJ66863.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           longum JCM 1217]
          Length = 480

 Score =  279 bits (714), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 160/408 (39%), Positives = 251/408 (61%), Gaps = 26/408 (6%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGY-----ERVNSMDDADLIVLNTCHIREKAAEKVY 81
           F + + GCQMNV+DS R+  +  + GY     +++N  +D DL+VLNTC +RE AAE++Y
Sbjct: 27  FHIHTLGCQMNVHDSERIAGVLEANGYVPATEDQIND-NDLDLLVLNTCAVRENAAERMY 85

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             +GR   +K  R     +L + V GC+AQ + ++I   +P V+ V G +    LP+LL+
Sbjct: 86  GTIGRFNRVKLVR----PNLQIAVGGCMAQLDRKKIADTAPWVSAVFGTKNIEDLPKLLD 141

Query: 142 RARF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           + R  GK  V     +     +L        R   +++++ I  GC+  CTFC+VP TRG
Sbjct: 142 QNRATGKAQVQVTEQLRQFPSQLPAA-----RASRISSWVAISVGCNNTCTFCIVPTTRG 196

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E  R    ++DE R+ + +G  E+TLLGQNVN++ G G+ G++  FS LL +   I GL
Sbjct: 197 KEKDRRPGDILDEIRQCVADGAKEVTLLGQNVNSF-GYGI-GDRYAFSKLLRACGTIDGL 254

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+T+ HP   +D +I A  +   +M  LH P+QSGSDRIL++M R + + ++  I+ 
Sbjct: 255 ERVRFTSPHPAAFTDDVIAAMAETPNIMHQLHFPLQSGSDRILRAMRRSYRSAKFLDILG 314

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           RIR+  PD  IS+D IVGFPGET++DF+ TMD+V +  ++ AF+F YSPR GTP + M E
Sbjct: 315 RIRAAMPDAQISTDIIVGFPGETEEDFQQTMDVVRQARFSSAFTFIYSPRPGTPAAAM-E 373

Query: 381 QVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKE 424
           Q+  +V   + +RL+ LQ+++ E+ ++  +   G+ +EV+I  K GK+
Sbjct: 374 QIPRDVVQDRFDRLVALQEQITEENLATFE---GRDVEVMITGKLGKK 418


>gi|328955566|ref|YP_004372899.1| RNA modification enzyme, MiaB family [Coriobacterium glomerans PW2]
 gi|328455890|gb|AEB07084.1| RNA modification enzyme, MiaB family [Coriobacterium glomerans PW2]
          Length = 456

 Score =  279 bits (714), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 168/449 (37%), Positives = 267/449 (59%), Gaps = 18/449 (4%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           +FV+++GCQMN++DS R+  +  S G   V +  +AD++V  TC +RE A  ++Y   G+
Sbjct: 15  YFVRTFGCQMNLHDSERVAGLLDSCGCLEVETPQEADIVVFMTCCVREAADVRLY---GQ 71

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
             +LK+     GG  +V V GC+AQ +G ++L     V+VV G  +   + +LL  A   
Sbjct: 72  CSSLKSLSSPPGGRRIVAVGGCIAQRDGRDLLCNLDNVDVVFGTHSIAHVAQLLAAA--- 128

Query: 147 KRVVDTDYSVEDK-FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
               D    V  +  E+ +  D  ++R+R   A++ I  GC+ FC++C+VPY RG E SR
Sbjct: 129 --FEDESPHVRTRDQEKRAATDMPWSRRRTYHAWVPIMTGCNNFCSYCIVPYVRGRERSR 186

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
              +V+DE   L  +GV E+TLLGQNVN++ G+   G +  F+ LL  +++  G+ R+R+
Sbjct: 187 PADEVIDEVVGLARSGVREVTLLGQNVNSY-GRDSAG-RPRFAKLLREVADT-GIERIRF 243

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
           T+SHP+D+    I+A  DL  +MP LHL VQSGS RIL  MNRR++   Y ++IDR+R  
Sbjct: 244 TSSHPKDLLPETIEAMADLPAVMPQLHLAVQSGSSRILSLMNRRYSRESYLELIDRVRQR 303

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P+IA+S+D IVGFPGE++DDF  T+ LV  + ++QAF+F YS R GTP + + +    +
Sbjct: 304 MPEIALSTDIIVGFPGESEDDFEETLSLVRSVRFSQAFTFIYSRRQGTPAAQIEDSTPRD 363

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GRSPWLQSV---VLN 441
           V  +R   L + + +  +  N+  +G+ + VLIE   K+   ++ G+SP  Q+V   V +
Sbjct: 364 VVLDRYNRLLRVVEQGALENNERDLGRTVPVLIEGSSKKNPDMLQGKSPKNQTVHAPVPD 423

Query: 442 SKNHN--IGDIIKVRITDVKISTLYGELV 468
           + +    +G I+ V I   +   L G +V
Sbjct: 424 TADARRFVGSILDVTIKRARTWYLTGSVV 452


>gi|332654850|ref|ZP_08420592.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Ruminococcaceae bacterium
           D16]
 gi|332516193|gb|EGJ45801.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Ruminococcaceae bacterium
           D16]
          Length = 473

 Score =  279 bits (714), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 168/465 (36%), Positives = 261/465 (56%), Gaps = 22/465 (4%)

Query: 12  HMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCH 71
           H V+QI  Q   P   FV +YGCQ N  DS R+       GY      + AD+IV+NTC 
Sbjct: 21  HAVAQINAQRPQPPLAFVDTYGCQQNEADSERIRGYLQEMGYGFTQDEEQADVIVINTCA 80

Query: 72  IREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAE--GEEILRRSPIVNVVVG 129
           IRE A ++V   LG + ++K     +    L+ + GC+AQ     +++      V++V G
Sbjct: 81  IREHAEQRVLGNLGALVHVKRRHPGQ----LICLCGCMAQEAHVAQKVKESYRHVDLVFG 136

Query: 130 PQTYYRLPELLERARFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
           PQ  +R PE +      + RV  T        E + +V     R+  V A+++I  GC+ 
Sbjct: 137 PQVLWRFPEFIHSLLTARGRVFQTPDLPGSIAEGIPVV-----RQDKVKAWVSIMYGCNN 191

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS 248
           FC++C+VPY RG E SR    ++ E R+L++ G  +ITLLGQNVN++ GK L+     F+
Sbjct: 192 FCSYCIVPYVRGRERSREPQDILAEVRQLVEEGYKDITLLGQNVNSY-GKDLEN-PMDFA 249

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
           DLL  ++EI G   +R+ TSHP+D +  L +     + + P LHLP Q+G+DRILK MNR
Sbjct: 250 DLLAKVNEIPGDFLIRFMTSHPKDATQKLFETMARCEKVAPVLHLPFQAGNDRILKVMNR 309

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
           RHT  +Y + I  ++++ PDI ++SD IVGFPGET ++F  T+ +++++ Y   F+F YS
Sbjct: 310 RHTREQYLEKIRALKALIPDIVLTSDVIVGFPGETTEEFEDTLKVLEEVRYDALFTFIYS 369

Query: 369 PRLGTPGSNMLEQVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE- 424
           PR+GTP + M + +    K     RL+ LQ K+ E++   + A +G+ +  LI+  G + 
Sbjct: 370 PRVGTPAAKMDDPMPREEKLANFNRLVALQDKISEEK---HAAYIGKTVRCLIDGQGDDA 426

Query: 425 KGKLVGRSPWLQSV-VLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           +     R+P  + V V      ++G   ++ I      +LYGELV
Sbjct: 427 EYPFTARTPGNRLVRVKGGTADDVGQFREIHIIGANKWSLYGELV 471


>gi|327404270|ref|YP_004345108.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Fluviicola taffensis DSM
           16823]
 gi|327319778|gb|AEA44270.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Fluviicola taffensis DSM
           16823]
          Length = 479

 Score =  279 bits (714), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 169/459 (36%), Positives = 263/459 (57%), Gaps = 27/459 (5%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ +V+SYGCQMN  DS  +  +   +GY    ++D+AD++++NTC IRE A  +V + L
Sbjct: 29  KKLYVESYGCQMNFSDSEVVASIMTKEGYTTTRNIDEADVVLINTCSIRENAETRVRNRL 88

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
              +     R  E  +L+V + GC+A+   + +L    +V++V GP  Y  LP L++   
Sbjct: 89  TEFK----KRKAEQPNLVVGILGCMAERLKQALLEEEQLVDLVAGPDAYRDLPNLIDEVG 144

Query: 145 FGKRVVDTDYSVEDKFERLSIV--DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            G+R V+   S E+ +  +S V  D G     GV+AF+TI  GCD  C+FCVVP+TRG E
Sbjct: 145 TGQRAVNVLLSREETYADISPVRMDQG-----GVSAFVTITRGCDNMCSFCVVPFTRGRE 199

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR----GKGLDGEKC----TFSDLLYSL 254
            SR    +V E + L  NG  E+TLLGQNV+++R     KG+  ++      F+ L+  +
Sbjct: 200 RSRDPLTIVQECKDLFANGYREVTLLGQNVDSYRWNMSSKGVLKDETIPTTNFAQLMEMV 259

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
           + I   +R+R++TSHP+DM+D +++     + + PY+HLPVQSG+  +L+ MNR ++   
Sbjct: 260 ALIHPDLRIRFSTSHPKDMTDDVLEMMAKYENICPYIHLPVQSGNSNVLERMNRGYSREW 319

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
           Y + I  I+ + PD AIS+D I GF GET+++ + T+ L+ ++GY  A+ FKYS R  T 
Sbjct: 320 YLERIAAIKRIIPDCAISTDIITGFCGETEEEHQETVSLMREVGYDFAYMFKYSERPKTL 379

Query: 375 GSNMLE-QVDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LV 429
                E  V E VK +RL   + LQ K      + + + VG+I +VL+E   K   +   
Sbjct: 380 AERKFEDDVPEEVKGKRLEEIIALQLK---NASAAHKSQVGKIAKVLVEGPSKRSAEHFS 436

Query: 430 GRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           GR      VV    +   G  + V+ITD   +TL GELV
Sbjct: 437 GRDGRNSKVVFPKGDSKKGQYVFVKITDYTSATLMGELV 475


>gi|189439139|ref|YP_001954220.1| (dimethylallyl)adenosine tRNA methylthiotransferase
           [Bifidobacterium longum DJO10A]
 gi|227547646|ref|ZP_03977695.1| possible tRNA 2-methylthioadenine synthetase [Bifidobacterium
           longum subsp. infantis ATCC 55813]
 gi|239621252|ref|ZP_04664283.1| RNA modification enzyme [Bifidobacterium longum subsp. infantis
           CCUG 52486]
 gi|312132572|ref|YP_003999911.1| miab [Bifidobacterium longum subsp. longum BBMN68]
 gi|229890432|sp|B3DQX6|MIAB_BIFLD RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|189427574|gb|ACD97722.1| 2-methylthioadenine synthetase [Bifidobacterium longum DJO10A]
 gi|227211901|gb|EEI79797.1| possible tRNA 2-methylthioadenine synthetase [Bifidobacterium
           longum subsp. infantis ATCC 55813]
 gi|239515713|gb|EEQ55580.1| RNA modification enzyme [Bifidobacterium longum subsp. infantis
           CCUG 52486]
 gi|311773512|gb|ADQ03000.1| MiaB [Bifidobacterium longum subsp. longum BBMN68]
          Length = 484

 Score =  279 bits (714), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 160/408 (39%), Positives = 251/408 (61%), Gaps = 26/408 (6%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGY-----ERVNSMDDADLIVLNTCHIREKAAEKVY 81
           F + + GCQMNV+DS R+  +  + GY     +++N  +D DL+VLNTC +RE AAE++Y
Sbjct: 31  FHIHTLGCQMNVHDSERIAGVLEANGYVPATEDQIND-NDLDLLVLNTCAVRENAAERMY 89

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             +GR   +K  R     +L + V GC+AQ + ++I   +P V+ V G +    LP+LL+
Sbjct: 90  GTIGRFNRVKLVR----PNLQIAVGGCMAQLDRKKIADTAPWVSAVFGTKNIEDLPKLLD 145

Query: 142 RARF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           + R  GK  V     +     +L        R   +++++ I  GC+  CTFC+VP TRG
Sbjct: 146 QNRATGKAQVQVTEQLRQFPSQLPAA-----RASRISSWVAISVGCNNTCTFCIVPTTRG 200

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E  R    ++DE R+ + +G  E+TLLGQNVN++ G G+ G++  FS LL +   I GL
Sbjct: 201 KEKDRRPGDILDEIRQCVADGAKEVTLLGQNVNSF-GYGI-GDRYAFSKLLRACGTIDGL 258

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+T+ HP   +D +I A  +   +M  LH P+QSGSDRIL++M R + + ++  I+ 
Sbjct: 259 ERVRFTSPHPAAFTDDVIAAMAETPNIMHQLHFPLQSGSDRILRAMRRSYRSAKFLDILG 318

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           RIR+  PD  IS+D IVGFPGET++DF+ TMD+V +  ++ AF+F YSPR GTP + M E
Sbjct: 319 RIRAAMPDAQISTDIIVGFPGETEEDFQQTMDVVRQARFSSAFTFIYSPRPGTPAAAM-E 377

Query: 381 QVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKE 424
           Q+  +V   + +RL+ LQ+++ E+ ++  +   G+ +EV+I  K GK+
Sbjct: 378 QIPRDVVQDRFDRLVALQEQITEENLATFE---GRDVEVMITGKLGKK 422


>gi|189347647|ref|YP_001944176.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Chlorobium
           limicola DSM 245]
 gi|229890475|sp|B3EGT4|MIAB_CHLL2 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|189341794|gb|ACD91197.1| RNA modification enzyme, MiaB family [Chlorobium limicola DSM 245]
          Length = 442

 Score =  279 bits (714), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 161/446 (36%), Positives = 254/446 (56%), Gaps = 21/446 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++F++ ++GCQMN  DS  +  +    GY++ +S ++A +I+LNTC +RE A E++  +L
Sbjct: 6   RKFYIHTFGCQMNQADSGIIAALLEQDGYQQASSEEEAGIIMLNTCAVRENAVERIAHYL 65

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             ++  K    ++  +LLV + GC+ Q   EE+    P+++ + GP TY  LP L+  A 
Sbjct: 66  QHVKGFK----RKCPELLVGLTGCIPQYRREELFTVFPVIDFLAGPDTYRVLPVLIAEAG 121

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G R    D++  + ++ ++       R + +TAF+ I  GC+  C FCVVP+TRG E S
Sbjct: 122 KG-RAARLDFNPFETYDGVT-----QARTQSLTAFVPIMRGCNNMCAFCVVPFTRGRERS 175

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
                V+DE R L ++G  EITLLGQNVN++       +   FS LL ++S      R+R
Sbjct: 176 HPFGSVLDEVRALAESGCREITLLGQNVNSYHDSQSGAD---FSRLLDAVSREAPETRIR 232

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +TTSHP+DMS  L++       +  +LHLPVQSGS R+L  MNR H   +YR  I+ +R 
Sbjct: 233 FTTSHPKDMSHSLVETMASRPNICNHLHLPVQSGSTRMLARMNRGHDIEDYRNKIELLRE 292

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT-PGSNMLEQVD 383
             P I++S+D I GF GE+D D   T++L+ ++ +  AF F YS R GT     M + V 
Sbjct: 293 RIPGISLSTDLIAGFCGESDADHCQTLELMREVRFDSAFMFYYSVRPGTLAARTMPDDVP 352

Query: 384 ENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLVGRSPWLQSVV 439
           E VK +RL   + LQ  +  + +      +G ++EVL+E   +    +L+GR+   + VV
Sbjct: 353 EEVKKQRLQEIIDLQNGISAELLRL---AIGSVVEVLVESESRRSSDQLMGRTGGNRVVV 409

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYG 465
            +   H  GD+++V IT    +TL G
Sbjct: 410 FDRGIHQPGDMVRVMITGSTSATLIG 435


>gi|282858916|ref|ZP_06268056.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella bivia
           JCVIHMP010]
 gi|282588298|gb|EFB93463.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella bivia
           JCVIHMP010]
          Length = 442

 Score =  279 bits (714), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 158/450 (35%), Positives = 261/450 (58%), Gaps = 15/450 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ ++++YGCQMNV DS  +  +    GY+     ++AD I LNTC IRE A  K+Y+ L
Sbjct: 2   KKLYIETYGCQMNVADSEVVASVMKMAGYDVCEKEEEADAIFLNTCSIRENAENKIYNRL 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             +   K    ++G DL++ V GC+A+   ++++      N+V GP +Y  LP+++ +  
Sbjct: 62  ETLHAEK----RKGRDLILGVLGCMAERVRDDLIENH-YANLVCGPDSYLNLPDMIAQCE 116

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G    D + S  + +  +     G NR   V+ F++I  GC+ FC +C+VP+TRG E S
Sbjct: 117 NGNNACDIELSTTETYRNIIPQRIGGNR---VSGFVSIMRGCNNFCHYCIVPFTRGRERS 173

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK----CTFSDLLYSLSEIKGL 260
           R +  ++ E + L   G  E+TLLGQNVN++ G   +G++     +F++LL  +++    
Sbjct: 174 RDVESILQEVQDLKGRGFREVTLLGQNVNSY-GLLPNGKRPENGTSFAELLRKVAQSVPN 232

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
           +R+R+TTS+P DM++ +++A  D   L  ++H P QSGS+ +LK MNR++T  EY   + 
Sbjct: 233 MRVRFTTSNPEDMTEDILQAIADEPNLCHHIHFPAQSGSNSVLKDMNRKYTREEYLDKVA 292

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML- 379
            IR + PD  +++D  VG+  E+ +D + T+DL+ ++G+  AF FKYS R GT  +  L 
Sbjct: 293 AIRRIIPDCGLTTDIFVGYHNESLEDHQQTLDLMREVGFDSAFMFKYSERPGTYAAKHLP 352

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSV 438
           + V E  K  RL  L     +     N    G+  ++LIE+ GK    +L+GR+P  ++V
Sbjct: 353 DNVSEEEKVRRLNELIHLQTQISAEMNKKDEGKEFDILIERFGKRSHDQLMGRTPQNKAV 412

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           V+   NH+IGD + VRI     +TL GE +
Sbjct: 413 VIPKGNHHIGDTVHVRIVSSSSATLIGEEI 442


>gi|150026019|ref|YP_001296845.1| hypothetical protein FP1979 [Flavobacterium psychrophilum JIP02/86]
 gi|229890536|sp|A6H119|MIAB_FLAPJ RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|149772560|emb|CAL44043.1| Protein of unknown function [Flavobacterium psychrophilum JIP02/86]
          Length = 481

 Score =  279 bits (714), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 167/461 (36%), Positives = 257/461 (55%), Gaps = 26/461 (5%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F++SYGC MN  DS  +  +    GY   N +++ADL+++NTC IR+KA + +   L
Sbjct: 24  KKLFIESYGCAMNFSDSEIVASILSGNGYNTTNVLEEADLVLVNTCSIRDKAEQTIRKRL 83

Query: 85  GRIRNLK--NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +   +K  N ++K G      V GC+A+   ++ L    IV++VVGP  Y  LP LL  
Sbjct: 84  EKYNAVKRINPKMKVG------VLGCMAERLKDKFLEEEKIVDLVVGPDAYKDLPNLLNE 137

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
              G+  ++   S ++ +  +S V    N   G+TA + I  GCD  CTFCVVP+TRG E
Sbjct: 138 VEEGRDAINVILSKDETYGDISPVRLMSN---GITALVAITRGCDNMCTFCVVPFTRGRE 194

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNA--WRGKGLDG--------EKCT---FSD 249
            SR    ++ E + L   G  EITLLGQNV++  W G GL          +K T   F  
Sbjct: 195 RSREPQSIMAEIQDLWHKGFKEITLLGQNVDSYLWYGGGLKKDFTNASEIQKATAVDFDQ 254

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
           LL  ++     +R+R++TS+P+DM + ++        +  ++HLPVQSGS+RILK MNR 
Sbjct: 255 LLEMVAVGFPKMRIRFSTSNPQDMHESILHVMAKHSNICKHIHLPVQSGSNRILKEMNRL 314

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369
           HT  EY  +ID+IR++ P+ +IS D I GFP ET++D + T+ L+  + Y   + + YS 
Sbjct: 315 HTREEYMILIDKIRAIIPNASISQDMIAGFPTETEEDHQDTISLMQYVKYNFGYMYSYSE 374

Query: 370 RLGT-PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-K 427
           R GT  G  M + V + +KA RL  +    ++     ++  +GQ +EVL+EK  K+   +
Sbjct: 375 RPGTLAGRKMKDDVSDEIKARRLQEIVDLQQKHAWWRSEDFIGQTVEVLVEKVSKKSTEE 434

Query: 428 LVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
             GR+    +VV   +++ IGD + V+I      TL GE V
Sbjct: 435 FSGRNSQSITVVFPKEHYKIGDFVNVKIKSCTSGTLKGEAV 475


>gi|291516737|emb|CBK70353.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bifidobacterium longum
           subsp. longum F8]
          Length = 484

 Score =  279 bits (714), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 160/408 (39%), Positives = 251/408 (61%), Gaps = 26/408 (6%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGY-----ERVNSMDDADLIVLNTCHIREKAAEKVY 81
           F + + GCQMNV+DS R+  +  + GY     +++N  +D DL+VLNTC +RE AAE++Y
Sbjct: 31  FHIHTLGCQMNVHDSERIAGVLEANGYVPATEDQIND-NDLDLLVLNTCAVRENAAERMY 89

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             +GR   +K  R     +L + V GC+AQ + ++I   +P V+ V G +    LP+LL+
Sbjct: 90  GTIGRFNRVKLVR----PNLQIAVGGCMAQLDRKKIADTAPWVSAVFGTKNIEDLPKLLD 145

Query: 142 RARF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           + R  GK  V     +     +L        R   +++++ I  GC+  CTFC+VP TRG
Sbjct: 146 QNRATGKAQVQVTEQLRQFPSQLPAA-----RASRISSWVAISVGCNNTCTFCIVPTTRG 200

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E  R    ++DE R+ + +G  E+TLLGQNVN++ G G+ G++  FS LL +   I GL
Sbjct: 201 KEKDRRPGDILDEIRQCVADGAKEVTLLGQNVNSF-GYGI-GDRYAFSKLLRACGTIDGL 258

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+T+ HP   +D +I A  +   +M  LH P+QSGSDRIL++M R + + ++  I+ 
Sbjct: 259 ERVRFTSPHPAAFTDDVIAAMAETPNIMHQLHFPLQSGSDRILRAMRRSYRSAKFLDILG 318

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           RIR+  PD  IS+D IVGFPGET++DF+ TMD+V +  ++ AF+F YSPR GTP + M E
Sbjct: 319 RIRAAMPDAQISTDIIVGFPGETEEDFQQTMDVVRQARFSSAFTFIYSPRPGTPAAAM-E 377

Query: 381 QVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKE 424
           Q+  +V   + +RL+ LQ+++ E+ ++  +   G+ +EV+I  K GK+
Sbjct: 378 QIPRDVVQDRFDRLVALQEQITEENLATFE---GRDVEVMITGKLGKK 422


>gi|320527236|ref|ZP_08028422.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Solobacterium moorei
           F0204]
 gi|320132427|gb|EFW24971.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Solobacterium moorei
           F0204]
          Length = 477

 Score =  279 bits (713), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 170/446 (38%), Positives = 247/446 (55%), Gaps = 16/446 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +++F+ +YGCQ NV D   +  M    GY   N  DDAD++  NTC IR+ A ++V S +
Sbjct: 42  KKYFIHTYGCQANVRDGEALAGMMEMMGYTSTNVPDDADVLFFNTCAIRKAAEDRVLSDV 101

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELL-E 141
            ++R LK  R       +  + GC+AQ E   + IL  SP V+++ G    +R+P LL E
Sbjct: 102 NKLRYLKEQR----PTTVFCICGCMAQEEETVKRILSVSPHVDLIFGTHNIHRMPNLLAE 157

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
             +  +R V+      D  E + +      R      F+ I  GCDKFCT+C+VPYTRG 
Sbjct: 158 VIQSNQRKVEVFSQEGDVVEDVPV-----KRSMDSKGFVNIMYGCDKFCTYCIVPYTRGR 212

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR +  ++ E  +L  +G  E+ LLGQNVNA+ GK L  E   F+ LL ++++  G+ 
Sbjct: 213 ERSRRMEDILREVEELKASGRKEVVLLGQNVNAY-GKDLKMED-GFTQLLVAVAKT-GIE 269

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+ + TSHPRD S   I A  D   +MP+LHLPVQSGS+ +L+ M R +T   Y+Q+ + 
Sbjct: 270 RISFYTSHPRDYSATTIDAMRDYPNIMPFLHLPVQSGSNEVLRRMARGYTVERYKQLYND 329

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           ++   P IA ++D IVGFP ETD++F AT+DLV    +  A++F YSPR GTP +NM + 
Sbjct: 330 LKKKVPHIAFTTDLIVGFPNETDEEFEATLDLVRYCRFDMAYAFIYSPRAGTPAANMEDN 389

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GRSPWLQSVVL 440
           +   VK ERL  L   L E     N   +G+I+ VL     K   ++  G S   + V  
Sbjct: 390 IPLEVKKERLARLNDLLTEIAEENNRRFLGEIVSVLCIGTSKRNSEVYSGYSKDNKLVNF 449

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGE 466
            S+   I  I+ V IT      L G+
Sbjct: 450 TSEKDCINQIVNVEITATHSYYLEGK 475


>gi|319955951|ref|YP_004167214.1| tRNA-i(6)a37 thiotransferase enzyme miab [Nitratifractor salsuginis
           DSM 16511]
 gi|319418355|gb|ADV45465.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Nitratifractor salsuginis
           DSM 16511]
          Length = 434

 Score =  279 bits (713), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 165/446 (36%), Positives = 253/446 (56%), Gaps = 19/446 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRM-EDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ ++++ GC MNV D+  M  ++   + Y+   ++++ADLI++NTC +REK   K++S 
Sbjct: 3   KKLYIETLGCAMNVRDTEHMIAELSRKEDYDLTENLEEADLIIINTCSVREKPVAKLFSE 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +GR R  +    KEG    + VAGC A   GEEI+RR+P V+ V+G +   ++ ++L   
Sbjct: 63  IGRFRKQR----KEGAK--IGVAGCTASHLGEEIIRRAPYVDFVLGARNVSKITKVLNEK 116

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
              +  V TDY         S    G  R     A + I  GCDK CTFC+VP TRG EI
Sbjct: 117 HAVE--VSTDYDE-------STYPFGEYRSNPFKAMVNISIGCDKKCTFCIVPATRGDEI 167

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAW--RGKGLDGEKCTFSDLLYSLSEIKGLV 261
           S   S ++ E +K +  G  E+ LLGQNVN +  R    + E   F++LL  +S ++GL 
Sbjct: 168 SIPSSLILQEVKKAVQAGAKEVILLGQNVNNYGRRFSAGEDEVRNFTELLKRVSAVEGLE 227

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+ + HP  M D  ++       + P +H+P+QSGS R+LK M R ++   +    +R
Sbjct: 228 RIRFQSPHPLHMDDAFLEEFASNPKICPQIHVPLQSGSTRLLKRMKRGYSKEWFLDRCER 287

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           IR++ P +AIS+D IVGFPGE+++DF  TM++V+K+ + Q FSF+YSPR  T  +   +Q
Sbjct: 288 IRAMVPGVAISTDIIVGFPGESEEDFAETMEVVEKVRFDQMFSFRYSPRPMTAAAEYEDQ 347

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           + E V AERL  LQ +  E       A  G+I EV  E+  +   ++ GRS   + V + 
Sbjct: 348 IPETVAAERLKRLQSRQDEITDEIMAAQEGRIHEVYFEEL-RPGNRVAGRSADGRLVSVE 406

Query: 442 SKNHNIGDIIKVRITDVKISTLYGEL 467
                +G I+ VRIT     +L GEL
Sbjct: 407 GSEELLGKILPVRITRAMRRSLEGEL 432


>gi|282880437|ref|ZP_06289144.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella timonensis
           CRIS 5C-B1]
 gi|281305540|gb|EFA97593.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella timonensis
           CRIS 5C-B1]
          Length = 451

 Score =  279 bits (713), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 170/465 (36%), Positives = 262/465 (56%), Gaps = 36/465 (7%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F+++YGCQMNV DS  +  +    GYE     ++AD I LNTC +RE A  K+Y+  
Sbjct: 2   KKLFIETYGCQMNVADSEVVASVMQMAGYELCEQEEEADAIFLNTCSVRENAENKIYN-- 59

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R+  L   R K+G +L++ V GC+A+   +++L      ++V GP +Y  LP+++ +A 
Sbjct: 60  -RLDALHAER-KKGRNLILGVLGCMAERVKDDLLNNHH-TDLVCGPDSYLNLPDMMAQAE 116

Query: 145 FGKRVVDTDYSVEDKF-----ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
            G + +D + S  + +     +RL I          V+ F++I  GC+ FC +C+VPYTR
Sbjct: 117 TGNKAIDIELSKTETYKDVVPQRLMI--------GKVSGFVSIMRGCNNFCHYCIVPYTR 168

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW----------RGKGLDGEKCTFSD 249
           G E SR +  ++ E R L D    EITLLGQNVN++           G+ +      F  
Sbjct: 169 GRERSRDIESILREVRDLRDKHYKEITLLGQNVNSYCFTVPERQLDNGETIAAHTIDFPQ 228

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
           LL  ++     +R+R+T+SHP+DMSD  +    +   +  ++HLPVQSGS++ILK MNR+
Sbjct: 229 LLRRVAHEVPDIRIRFTSSHPKDMSDDTLHVIAEEPNVCKHIHLPVQSGSNKILKLMNRK 288

Query: 310 HTAYEYRQIIDRIRSVR---PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
           +T   Y   +DRIR+++   PD  IS+D  VG+ GET++D + ++ L+  +GY  AF FK
Sbjct: 289 YTVEWY---MDRIRAIQRIIPDCGISTDIFVGYHGETEEDHQLSLQLMRTVGYDSAFMFK 345

Query: 367 YSPRLGTPGSNML-EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-E 424
           YS R GT  S  L + V E  K  RL  +     E     N    G+  EVL+E   K  
Sbjct: 346 YSERPGTYASKHLPDNVPEEEKIRRLNEMIHLQTELSAISNKKDEGKEFEVLVEGFSKRS 405

Query: 425 KGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
           + +L GR+   + VVL+   H+IG+ ++VRIT    +TL+GE V 
Sbjct: 406 REQLCGRTEQNKMVVLDKGKHHIGETVRVRITRSTSATLFGEEVT 450


>gi|323343556|ref|ZP_08083783.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella oralis ATCC
           33269]
 gi|323095375|gb|EFZ37949.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella oralis ATCC
           33269]
          Length = 434

 Score =  279 bits (713), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 160/449 (35%), Positives = 260/449 (57%), Gaps = 21/449 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ ++++YGCQMNV DS  +  +    GY+  ++  +AD + LNTC +RE A  K+Y+  
Sbjct: 2   KKLYIETYGCQMNVADSEVVASVMKMAGYDVCDTESEADAVFLNTCSVRENAENKIYN-- 59

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R+  L   R K+G +L++ V GC+A+   ++++      ++V GP +Y  LP+++ +A 
Sbjct: 60  -RLDALHAER-KKGRELILGVLGCMAERVKDDLIENHH-ADLVAGPDSYLNLPDMIAQAE 116

Query: 145 FGKRVVDTDYSVEDKFERL---SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
            G + +D + S  + ++ +    ++ G       +  F++I  GCD FC +C+VPYTRG 
Sbjct: 117 TGNKAIDIELSKTETYKDVVPQRVILGK------IGGFVSIMRGCDNFCHYCIVPYTRGR 170

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR +  ++ E   L D    E+TLLGQNVN++R   +      F  LL  ++E+   +
Sbjct: 171 ERSRDIESILREVIDLRDKHYKEVTLLGQNVNSYRFGDI-----GFPQLLRRVAEVVPDM 225

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHP+DMSD  +    D+  +  ++HLPVQSGS+++LK MNR++T   Y   +  
Sbjct: 226 RVRFTTSHPKDMSDETLHVIADMPNVCKHIHLPVQSGSNKVLKLMNRKYTREWYMDRVQA 285

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML-E 380
           IR + PD  +S+D  VG+ GET++D R ++ L+ ++GY  AF FKYS R GT  S  L +
Sbjct: 286 IRRIVPDCGLSTDIFVGYHGETEEDHRQSLSLMKEVGYDSAFMFKYSERPGTYASKHLPD 345

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVV 439
            V E  K  RL  L     E     N    G+  +VL+E   K  + +L GR+   + VV
Sbjct: 346 NVSEEEKVRRLNELIHLQTELSAVSNKRDEGKEFDVLVEGFSKRSRSQLCGRTEQNKMVV 405

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
            +  N +IG+ ++V+IT    +TL+GE V
Sbjct: 406 FDKGNRHIGETVRVKITGSTSATLFGEEV 434


>gi|184201228|ref|YP_001855435.1| putative tRNA-thiotransferase [Kocuria rhizophila DC2201]
 gi|229890554|sp|B2GKH0|MIAB_KOCRD RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|183581458|dbj|BAG29929.1| putative tRNA-thiotransferase [Kocuria rhizophila DC2201]
          Length = 513

 Score =  279 bits (713), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 168/446 (37%), Positives = 254/446 (56%), Gaps = 35/446 (7%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD-DADLIVLNTCHIREKAAEKVYSFLG 85
           + V++ GCQMN +DS R+  +  + GY  V ++  + DL+V NTC +RE A  K+Y  LG
Sbjct: 29  YEVRTLGCQMNAHDSERITGLLENAGY--VPAVGREPDLVVFNTCAVRENADNKLYGQLG 86

Query: 86  RIRNLK--NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           ++  +K  N R++      + V GC+AQ +   I+ ++P V+VV G      LP LLERA
Sbjct: 87  QLAPVKRRNDRLQ------IAVGGCLAQKDRSTIVEKAPWVDVVFGTHNIGSLPVLLERA 140

Query: 144 RFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           R  ++  V+   S+E     L        R++    +++I  GC+  CTFC+VP  RG E
Sbjct: 141 RHNQQAQVEILESLETFPSALPT-----KREQAYAGWVSISVGCNNTCTFCIVPQLRGKE 195

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLV 261
             R    ++ E R L+D+G  E+TLLGQNVN++   G++ G++  F+ LL +  EI+GL 
Sbjct: 196 KDRRPGDILAEVRALVDSGAVEVTLLGQNVNSY---GVEFGDRGAFAKLLRACGEIEGLE 252

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+T+ HP   +D +I A  +   +MP LH+P+QSGSDRILK M R + +  +  I+DR
Sbjct: 253 RIRFTSPHPAAFTDDVIDAMAETPNVMPQLHMPLQSGSDRILKRMRRSYRSTRFLGILDR 312

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R   PD AI++D IVGFPGET+ DF+ T+D+V    ++ AF+F+YS R GTP   M +Q
Sbjct: 313 VRDRIPDAAITTDIIVGFPGETEQDFQDTLDVVAASEFSSAFTFQYSIRPGTPAGEMADQ 372

Query: 382 VDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG----KLVGRSPW 434
           V   V   + ERL  LQ  +  +    N   VG   EVL+      K     +L GRS  
Sbjct: 373 VPAAVVQERFERLTALQDGISAR---LNRQLVGTRAEVLVSAQSGRKSESTHRLSGRSRD 429

Query: 435 LQSVVLNSKNHNI----GDIIKVRIT 456
            + V     +  +    GD++ V +T
Sbjct: 430 QRLVHFTVPDGAVAPRPGDVVSVPVT 455


>gi|322689418|ref|YP_004209152.1| hypothetical protein BLIF_1234 [Bifidobacterium longum subsp.
           infantis 157F]
 gi|320460754|dbj|BAJ71374.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis 157F]
          Length = 480

 Score =  279 bits (713), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 160/408 (39%), Positives = 250/408 (61%), Gaps = 26/408 (6%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGY-----ERVNSMDDADLIVLNTCHIREKAAEKVY 81
           F + + GCQMNV+DS R+  +  + GY     +++N  +D DL+VLNTC +RE AAE++Y
Sbjct: 27  FHIHTLGCQMNVHDSERIAGVLEANGYVPATEDQIND-NDLDLLVLNTCAVRENAAERMY 85

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             +GR   +K  R     +L + V GC+AQ + ++I   +P V+ V G +    LP+LL+
Sbjct: 86  GTIGRFNRVKLVR----PNLQIAVGGCMAQLDRKKIADTAPWVSAVFGTKNIEDLPKLLD 141

Query: 142 RARF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           + R  GK  V     +     +L        R   +++++ I  GC+  CTFC+VP TRG
Sbjct: 142 QNRATGKAQVQVTEQLRQFPSQLPAA-----RASRISSWVAISVGCNNTCTFCIVPTTRG 196

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E  R    ++DE R+ + +G  E+TLLGQNVN++ G G+ G++  FS LL +   I GL
Sbjct: 197 KEKDRRPGDILDEIRQCVADGAKEVTLLGQNVNSF-GYGI-GDRYAFSKLLRACGTIDGL 254

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+T+ HP   +D +I A  +   +M  LH P+QSGSDRIL++M R + + ++  I+ 
Sbjct: 255 ERVRFTSPHPAAFTDDVIAAMAETPNIMHQLHFPLQSGSDRILRAMRRSYRSAKFLDILG 314

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           RIR   PD  IS+D IVGFPGET++DF+ TMD+V +  ++ AF+F YSPR GTP + M E
Sbjct: 315 RIREAMPDAQISTDIIVGFPGETEEDFQQTMDVVRQARFSSAFTFIYSPRPGTPAAAM-E 373

Query: 381 QVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKE 424
           Q+  +V   + +RL+ LQ+++ E+ ++  +   G+ +EV+I  K GK+
Sbjct: 374 QIPRDVVQDRFDRLVALQEQITEENLATFE---GRDVEVMITGKLGKK 418


>gi|238762863|ref|ZP_04623831.1| hypothetical protein ykris0001_31730 [Yersinia kristensenii ATCC
           33638]
 gi|238698874|gb|EEP91623.1| hypothetical protein ykris0001_31730 [Yersinia kristensenii ATCC
           33638]
          Length = 361

 Score =  279 bits (713), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 147/321 (45%), Positives = 202/321 (62%), Gaps = 6/321 (1%)

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           VVD  +   +KF+RL        R  G TAF++I EGC+K+CTFCVVPYTRG E+SR   
Sbjct: 12  VVDISFPEIEKFDRLP-----EPRADGPTAFVSIMEGCNKYCTFCVVPYTRGEEVSRPSD 66

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
            ++ E  +L   GV E+ LLGQNVNA+RG   DGE C+F++LL  ++ I G+ R+R+TTS
Sbjct: 67  DILFEIAQLAAQGVREVNLLGQNVNAYRGATYDGEICSFAELLRLVAAIDGIDRVRFTTS 126

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
           HP + +D +I  + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II ++R  RPD
Sbjct: 127 HPIEFTDDIIDVYRDTPELVSFLHLPVQSGSDRILTMMKRAHTALEYKAIIRKLRQARPD 186

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           I ISSDFI+GFPGET  DF  TM LV  I +  ++SF YS R GTP +++ + V E  K 
Sbjct: 187 IQISSDFIIGFPGETQQDFEQTMKLVADIRFDTSYSFIYSSRPGTPAADLPDNVSEEEKK 246

Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNSKNHNI 447
           +RL  LQ+++ +Q +  +   VG +  +L+E   ++   +L GR+   + V        I
Sbjct: 247 QRLHILQERITQQAMEISREMVGTVQRILVEGTSRKNLMELAGRTENNRVVNFEGTPDMI 306

Query: 448 GDIIKVRITDVKISTLYGELV 468
           G  + V I DV  S+L G LV
Sbjct: 307 GKFVDVEIVDVYASSLRGILV 327


>gi|238019356|ref|ZP_04599782.1| hypothetical protein VEIDISOL_01220 [Veillonella dispar ATCC 17748]
 gi|237864055|gb|EEP65345.1| hypothetical protein VEIDISOL_01220 [Veillonella dispar ATCC 17748]
          Length = 426

 Score =  278 bits (712), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 161/438 (36%), Positives = 248/438 (56%), Gaps = 21/438 (4%)

Query: 36  MNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRI 95
           MN  DS R+     S GY     ++ ADLI+LNTC +RE A  KVY  +G +  LK    
Sbjct: 1   MNTADSERLSHQLESVGYTPTEDVEIADLILLNTCAVRENAETKVYGRIGELMRLK---- 56

Query: 96  KEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR---VVDT 152
           ++  +L++ V GC+AQ    E+ +R+P +++V+G      + E++E  + G      VD 
Sbjct: 57  RKNKNLILAVTGCMAQKNQAEMFKRAPHIDIVLGTHNIQHINEMIEEVQRGHTHQINVDM 116

Query: 153 DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVD 212
           D SV  + E  +  +G +       A++ I  GC+KFCT+C+VP+ RG EISR +  +V 
Sbjct: 117 DNSVLPELE--AKPNGTF------YAWVPIMNGCNKFCTYCIVPHVRGREISRPVEAIVK 168

Query: 213 EARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT-FSDLLYSLSEIKGLVRLRYTTSHPR 271
           E  +L   G  EITLLGQNVN++   GLD +  T F  L+ +L  I G+ R+RY TSHP+
Sbjct: 169 EVTELGAKGFKEITLLGQNVNSY---GLDFKDGTDFGTLVDALDGIPGIERIRYMTSHPQ 225

Query: 272 DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAI 331
           DM+  +I A G    ++ +LHLP+QSGS+RILK MNR +T   Y++++   R    D+ +
Sbjct: 226 DMTKSMIDALGRSSNIVTHLHLPIQSGSNRILKKMNRHYTVEHYKELLSYCREKIKDVVV 285

Query: 332 SSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERL 391
           ++D I GFPGET++DF AT+ L+  + Y  A++F YS R GTP + M +QV E VK  RL
Sbjct: 286 TTDIIAGFPGETEEDFLATLQLLKDVRYDMAYTFIYSKRSGTPAATMDDQVPEEVKRVRL 345

Query: 392 LCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSPWLQSVVLNSKNH-NIGD 449
             L     E     N    GQ+ ++++E    +++    GR+   + V+    +  +IG+
Sbjct: 346 QTLMDVQNEISYELNKPMEGQVFDIIVEGPSPRDEDMWFGRTSGNKMVLFPKDDSLSIGE 405

Query: 450 IIKVRITDVKISTLYGEL 467
            +   I   +    YG +
Sbjct: 406 TVPAYIDKAQTWVCYGTI 423


>gi|313887037|ref|ZP_07820737.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|312923563|gb|EFR34372.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Porphyromonas
           asaccharolytica PR426713P-I]
          Length = 450

 Score =  278 bits (712), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 160/451 (35%), Positives = 261/451 (57%), Gaps = 19/451 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +R F+++YGCQMNV DS  +       GY+  + +D+AD +++NTC +R+ A +++   +
Sbjct: 10  KRVFIETYGCQMNVADSEIIAAQMQLAGYQLTDQIDEADAVLINTCSVRDNAEQRI---I 66

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R+ NL   R + G   +V V GC+A+   E +++    V++V GP  Y  LP L+  A 
Sbjct: 67  HRLDNLNGQRRRSGHPQIVGVLGCMAERVRETLIQDHG-VDLVAGPDAYTDLPHLIAAAE 125

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRG--VTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            G+  +  + S  + +  +  V     R  G  ++ F++I  GCD FCT+C+VPYTRG E
Sbjct: 126 AGEPAISIELSKSETYSDVIPV-----RLPGLHISGFVSIMRGCDNFCTYCIVPYTRGRE 180

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR    +V E +++   G  E+TLLGQNVN++  +   G   TF+DLL  ++E    +R
Sbjct: 181 RSRDPESIVREVQRMAQEGYREVTLLGQNVNSYCWQSETGVSYTFADLLRKVAEAVPTMR 240

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+T+ HP+DM D  ++       +  ++H P+QSGS+RIL+ M+RR+T   Y + ++RI
Sbjct: 241 IRFTSPHPKDMKDETLEVMSLYPNICRHIHFPLQSGSNRILERMHRRYTREWYLERVERI 300

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQ 381
           R   PD  +S+D   GF GET++DF+ T++++ +     AF FKYS R GT  S ++++ 
Sbjct: 301 RDYMPDCGLSTDVFCGFSGETEEDFQETLEVMRQARLDSAFMFKYSERPGTYASRHLVDD 360

Query: 382 VDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQS 437
           V E VK ERL   + LQ +L    +  N+  VG+  EVLIE + K  +    GR+   + 
Sbjct: 361 VPEEVKVERLNRMIALQNEL---SLESNERDVGKSFEVLIEGYSKRSRDDFFGRTQQNKV 417

Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           +V    ++ IG ++ VR+  V  +T+ G  V
Sbjct: 418 IVFPKGHNQIGKLVTVRVERVTSATMIGSEV 448


>gi|15827471|ref|NP_301734.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Mycobacterium
           leprae TN]
 gi|221229948|ref|YP_002503364.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Mycobacterium
           leprae Br4923]
 gi|13432283|sp|Q49842|MIAB_MYCLE RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|13093021|emb|CAC31370.1| conserved hypothetical protein [Mycobacterium leprae]
 gi|219933055|emb|CAR71084.1| conserved hypothetical protein [Mycobacterium leprae Br4923]
          Length = 517

 Score =  278 bits (712), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 163/474 (34%), Positives = 260/474 (54%), Gaps = 60/474 (12%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNS---MDDADLIVLNTCHIREKAAEKVYSF 83
           + V++YGCQMNV+DS R+  +  + GY+R      + DAD++V NTC +RE A  ++Y  
Sbjct: 20  YQVRTYGCQMNVHDSERLAGLLEAAGYQRAADEADVGDADVVVFNTCAVRENADNRLYGN 79

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           L  +      R +   D+ + V GC+AQ +   +L ++P V++V G      LP LL+RA
Sbjct: 80  LSHL----APRKRNNPDMQIAVGGCLAQKDKHTVLSKAPWVDIVFGTHNLGSLPTLLDRA 135

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDG--------GYNRKRGVTAFLTIQEGCDKFCTFCVV 195
           R             +K  ++ IV+            R+    A+++I  GC+  CTFC+V
Sbjct: 136 R------------HNKVAQVEIVEALQHFPSSLPSARESDYAAWVSISVGCNNSCTFCIV 183

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW----RGKGLDGEKCTFSDLL 251
           P  RG E+ RS + ++ E   L+ +GV E+TLLGQNVNA+        L   + +F++LL
Sbjct: 184 PSLRGKEVDRSPADILAEVEALVADGVLEVTLLGQNVNAYGVSFADPALARNRGSFAELL 243

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
            S   I GL R+R+T+ HP + +  +I+A      + P LH+P+QSGSDR+L++M R + 
Sbjct: 244 RSCGSIDGLERVRFTSPHPAEFTYDVIEAMAQTPNVCPSLHMPLQSGSDRVLRAMRRSYR 303

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
              Y  II ++R+  P  AI++D IVGFPGET++DF AT+D+V ++ +  AF+F+YS R 
Sbjct: 304 VERYLGIIGQVRAAMPHAAITTDLIVGFPGETEEDFAATLDVVRQVRFTAAFTFQYSKRP 363

Query: 372 GTPGSNMLEQVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--- 425
           GTP + +  Q+ + V   + ERL+ LQ+++  ++   N   +G+I+E+L+      K   
Sbjct: 364 GTPAAELGGQLPKAVVQERYERLVELQEQICMEE---NRVLIGRIVELLVTTGEGRKDAR 420

Query: 426 ----------GKLVG---RSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGE 466
                     G+LV     +PW   V         GDII V +T+     L  +
Sbjct: 421 TARRTGRARDGRLVHFALDTPWEAQV-------RPGDIITVMVTEAAPHHLIAD 467


>gi|323140809|ref|ZP_08075724.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Phascolarctobacterium sp.
           YIT 12067]
 gi|322414691|gb|EFY05495.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Phascolarctobacterium sp.
           YIT 12067]
          Length = 442

 Score =  278 bits (712), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 162/443 (36%), Positives = 251/443 (56%), Gaps = 18/443 (4%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           +YGCQMN  D+          GY        AD+I++NTC +RE A +K+   +G ++ +
Sbjct: 12  NYGCQMNESDTEHYAGQLQELGYAPNPDFHTADIIIVNTCCVRESAEKKIAGKIGELKAV 71

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGP---QTYYRLPELLERARFGK 147
           K +      D+++ VAGC+AQ +GE++ ++ P V++++G      + RL  LLE     K
Sbjct: 72  KRA----NPDVVICVAGCMAQKDGEKLRKKHPQVDLLLGTAYVNDFKRL--LLEFLAERK 125

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
             V TD ++       S  +G   R+    A++ I  GC+ FCT+C+VPY RG E SRS+
Sbjct: 126 AAVYTDLTIHQ-----SEFEGHMVRQSSFAAWIPIMYGCNNFCTYCIVPYVRGRERSRSI 180

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
             +V E    + +G  E TLLGQNVN++ GK   G+K  F+ LL  +  I G+ R+ Y T
Sbjct: 181 DNIVAEIEAAVKDGYKEFTLLGQNVNSY-GKDF-GDKDAFAKLLRRVDIIPGVERIHYMT 238

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
           SHPRDMS+ +IKA  + + +    H+P Q+GS  IL+ MNR +T  +Y +++  +R   P
Sbjct: 239 SHPRDMSEEVIKAVAECEHICENFHMPFQAGSSEILRRMNRGYTKEKYLELVKLVRKYVP 298

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
           D  I++D IVGFPGET+++F  T+D+V ++G+  A++F YS R GTP + M  QV   VK
Sbjct: 299 DATITTDIIVGFPGETEENFEETLDVVRQVGFTSAYTFIYSKRSGTPAAKMENQVPLAVK 358

Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV--LNSKNH 445
            ERL  L     E  +  ++  VGQ +EVL E   K+K    GR+     V+  +  K +
Sbjct: 359 KERLNRLMALQNENSLKCHEKLVGQTVEVLAEGPSKQKTVWNGRTRTGVLVLWPIEDKQY 418

Query: 446 NIGDIIKVRITDVKISTLYGELV 468
            +G  + V+I   +   + G+ V
Sbjct: 419 EVGQKVNVQIEAAQTWLVKGKAV 441


>gi|229891230|sp|A6QCD0|MIAB_SULNB RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
          Length = 431

 Score =  278 bits (712), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 166/446 (37%), Positives = 247/446 (55%), Gaps = 18/446 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRM-EDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ F+++ GC MNV DS  M  ++   + YE   ++++ADLI++NTC +REK   K++S 
Sbjct: 2   KKLFIETLGCAMNVRDSEHMIAELNQKEPYELTQNVEEADLIIINTCSVREKPVAKLFSE 61

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G     K    K G      VAGC A   G++I++R+P V+ V+G +   ++ E++++ 
Sbjct: 62  IGVFNKYKKPGAKIG------VAGCTASHLGKDIIKRAPSVDFVIGARNVSKITEVVDKK 115

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
              +  +DTDY         S    G  R     A + I  GCDK CTFC+VP TRG EI
Sbjct: 116 HAVE--IDTDYDE-------STYAFGEYRTNPFKAMVNISIGCDKSCTFCIVPATRGDEI 166

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-RGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           S     +V E  K +  G  E+ LLGQNVN + R  G   EK  F+ LL  +S+I+GL R
Sbjct: 167 SIPSDLLVQEITKAVATGAKEVMLLGQNVNNYGRRFGATEEKIDFTGLLQKISKIEGLER 226

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+T+ HP  M D  I+       +   +H+P+QSGS  +LK M R +T   +    ++I
Sbjct: 227 IRFTSPHPLHMDDAFIQEFASNPKICKQIHVPLQSGSTSLLKVMKRGYTKENFLGRCEKI 286

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R + P+  IS+D IVGFPGET+ DF  TMD+++K+ + Q FSFKYSPR  T  +   EQ+
Sbjct: 287 RMLCPEATISTDIIVGFPGETEADFEDTMDVLEKVRFEQLFSFKYSPRPHTEAAEFEEQI 346

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
           D  +  ERL  LQ +  E      DA +G++ EV  ++  K  G++ GRS   + V +  
Sbjct: 347 DNKIAGERLTRLQTRHTEILDEIMDAQLGKVHEVYFDEL-KSNGRVSGRSDDGKLVFVEG 405

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
               +G I+ VRI       L G LV
Sbjct: 406 SEELLGKIVDVRIIKTSRGALDGVLV 431


>gi|467090|gb|AAA17273.1| B2235_C2_195 [Mycobacterium leprae]
          Length = 516

 Score =  278 bits (712), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 163/474 (34%), Positives = 260/474 (54%), Gaps = 60/474 (12%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNS---MDDADLIVLNTCHIREKAAEKVYSF 83
           + V++YGCQMNV+DS R+  +  + GY+R      + DAD++V NTC +RE A  ++Y  
Sbjct: 19  YQVRTYGCQMNVHDSERLAGLLEAAGYQRAADEADVGDADVVVFNTCAVRENADNRLYGN 78

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           L  +      R +   D+ + V GC+AQ +   +L ++P V++V G      LP LL+RA
Sbjct: 79  LSHL----APRKRNNPDMQIAVGGCLAQKDKHTVLSKAPWVDIVFGTHNLGSLPTLLDRA 134

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDG--------GYNRKRGVTAFLTIQEGCDKFCTFCVV 195
           R             +K  ++ IV+            R+    A+++I  GC+  CTFC+V
Sbjct: 135 R------------HNKVAQVEIVEALQHFPSSLPSARESDYAAWVSISVGCNNSCTFCIV 182

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW----RGKGLDGEKCTFSDLL 251
           P  RG E+ RS + ++ E   L+ +GV E+TLLGQNVNA+        L   + +F++LL
Sbjct: 183 PSLRGKEVDRSPADILAEVEALVADGVLEVTLLGQNVNAYGVSFADPALARNRGSFAELL 242

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
            S   I GL R+R+T+ HP + +  +I+A      + P LH+P+QSGSDR+L++M R + 
Sbjct: 243 RSCGSIDGLERVRFTSPHPAEFTYDVIEAMAQTPNVCPSLHMPLQSGSDRVLRAMRRSYR 302

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
              Y  II ++R+  P  AI++D IVGFPGET++DF AT+D+V ++ +  AF+F+YS R 
Sbjct: 303 VERYLGIIGQVRAAMPHAAITTDLIVGFPGETEEDFAATLDVVRQVRFTAAFTFQYSKRP 362

Query: 372 GTPGSNMLEQVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--- 425
           GTP + +  Q+ + V   + ERL+ LQ+++  ++   N   +G+I+E+L+      K   
Sbjct: 363 GTPAAELGGQLPKAVVQERYERLVELQEQICMEE---NRVLIGRIVELLVTTGEGRKDAR 419

Query: 426 ----------GKLVG---RSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGE 466
                     G+LV     +PW   V         GDII V +T+     L  +
Sbjct: 420 TARRTGRARDGRLVHFALDTPWEAQV-------RPGDIITVMVTEAAPHHLIAD 466


>gi|269219570|ref|ZP_06163424.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Actinomyces sp. oral
           taxon 848 str. F0332]
 gi|269210812|gb|EEZ77152.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Actinomyces sp. oral
           taxon 848 str. F0332]
          Length = 496

 Score =  278 bits (712), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 160/418 (38%), Positives = 250/418 (59%), Gaps = 36/418 (8%)

Query: 36  MNVYDSLRMEDMFFSQGY-------ERVNSMDDA-----DLIVLNTCHIREKAAEKVYSF 83
           MNV+DS R+  +  + GY       E+     DA     D++V+NTC +RE AA +++  
Sbjct: 1   MNVHDSERLAGLLENAGYVPVAVVPEKAARATDAGDEGADVVVVNTCSVRENAATRLFGN 60

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LG++  +K  R      + + V GC+AQ     I+ ++P V+ V+G      LP LLERA
Sbjct: 61  LGQLAAVKRERP----GMQIAVGGCLAQQMRGGIIEKAPWVDAVLGTHNLDVLPALLERA 116

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKR--GVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           R      + + +VE + E L +       +R     A+++I  GC+  CTFC+VP+ RG 
Sbjct: 117 RH-----NAEAAVEIE-ESLKVFPSTLPTRRESAFAAWVSISVGCNNTCTFCIVPHLRGK 170

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E  R   +V+ E   ++  G  E+TLLGQNVN++ G G  G++  F+ LL +  EI+GL 
Sbjct: 171 ERDRRPGEVLAEVEAVVSEGAIEVTLLGQNVNSY-GVGF-GDRQAFAKLLRACGEIEGLE 228

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+T+ HP   SD +I A  +   +MP LH+P+QSGSDR+L++M R + +  +  I+DR
Sbjct: 229 RVRFTSPHPAAFSDEVIAAMAETPSVMPSLHMPLQSGSDRVLRAMRRSYRSSRFLGILDR 288

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R+  P+ AI++D IVGFPGETD+DF AT+D+V++  +A A++F YSPR GTP ++M  Q
Sbjct: 289 VRARMPEAAITTDVIVGFPGETDEDFEATLDVVERSRFASAYTFIYSPRPGTPAADMDNQ 348

Query: 382 VDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGK---EKGKLVGRS 432
           VD  V ++   RL+ LQ+++  ++   N A  G  +EVLI E  G+   E  ++ GR+
Sbjct: 349 VDPEVVSDRYRRLVALQERISTEE---NKAKEGSAVEVLISEGEGRKDAETERVSGRA 403


>gi|281424718|ref|ZP_06255631.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella oris F0302]
 gi|281401088|gb|EFB31919.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella oris F0302]
          Length = 444

 Score =  278 bits (712), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 160/453 (35%), Positives = 267/453 (58%), Gaps = 21/453 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ ++++YGCQMNV DS  +  +    GY+   + ++AD I LNTC IRE A  K+Y+ L
Sbjct: 3   KKLYIETYGCQMNVADSEVVASVMKMAGYDVCENEEEADAIFLNTCSIRENAENKIYNRL 62

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             +    ++  K+G  L++ V GC+A+   +++++     ++V GP +Y  LP ++    
Sbjct: 63  DTL----HAEQKKGRQLILGVLGCMAERVKDDLIKNHH-ASLVCGPDSYLNLPTMIAECE 117

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G   VDT+ S  + +  +     G NR   V+ F++I  GC+ FC +C+VPYTRG E S
Sbjct: 118 LGHATVDTNLSTTETYRNVLPQRIGGNR---VSGFVSIMRGCNNFCHYCIVPYTRGRERS 174

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK----CTFSDLLYSLSEIKGL 260
           R +  ++ E + L D G  E+TLLGQNVN++ G   +G++     +F++LL  +++    
Sbjct: 175 RDVESILAEVKDLHDKGFKEVTLLGQNVNSY-GLLPNGKRPENGTSFAELLRKVAQSVPD 233

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
           +R+R+TTS+P DM++ ++ A  +   L  ++H P QSGS++ILK MNR++T  EY   + 
Sbjct: 234 MRVRFTTSNPEDMTEDILHAIAEEPNLCKHIHFPAQSGSNKILKLMNRKYTREEYLDKVA 293

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML- 379
            I+ + P   +++D  VG+  ET++D + T+ LV ++G+  AF FKYS R GT  +  L 
Sbjct: 294 AIKRIIPGCGLTTDIFVGYHDETEEDQQLTLSLVKEVGFDSAFMFKYSERPGTYAAKYLP 353

Query: 380 EQVDENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWL 435
           + V E VK  R   L+ LQ  +  +Q   N    G    +L E+   K++  L+GR+   
Sbjct: 354 DNVSEEVKIARLNELIHLQTTISGEQ---NKKDEGSEFVILTERFSKKDRNHLMGRTEQN 410

Query: 436 QSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           ++V++   NH+IG+ IKVRIT    +TL+GE +
Sbjct: 411 KAVIIEKGNHHIGEFIKVRITGSTSATLFGEEI 443


>gi|113952803|ref|YP_729952.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Synechococcus
           sp. CC9311]
 gi|113880154|gb|ABI45112.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Synechococcus sp. CC9311]
          Length = 436

 Score =  278 bits (711), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 176/447 (39%), Positives = 262/447 (58%), Gaps = 25/447 (5%)

Query: 36  MNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRI 95
           MN  DS RM  +  + GY+  N+  DADL++ NTC IR+ A +KVYS+LGR    +  R 
Sbjct: 1   MNKADSERMAGILETMGYQEANAELDADLVLYNTCTIRDNAEQKVYSYLGR----QAIRK 56

Query: 96  KEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDT-DY 154
           +   +L +VVAGCVAQ EGE +LRR P +++V+GPQ   RL  LL + + G++VV T D+
Sbjct: 57  RTNPNLTLVVAGCVAQQEGESLLRRVPELDLVMGPQHANRLETLLTQVQAGQQVVATEDH 116

Query: 155 SVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEA 214
            +    E L+       R     A++ +  GC++ CT+CVVP  RG E SR    ++ E 
Sbjct: 117 HI---LEDLTTA----RRDSSTCAWVNVIYGCNERCTYCVVPSVRGKEQSRLPESILLEM 169

Query: 215 RKLIDNGVCEITLLGQNVNAWRGKGLDG------EKCTFSDLLYSLSEIKGLVRLRYTTS 268
             L   G  EITLLGQN++A+ G+ L G       + T +DLL+ + +++G+ RLR+ TS
Sbjct: 170 EGLAARGFKEITLLGQNIDAY-GRDLPGITAEGRRQHTLTDLLHQVHDVEGIERLRFATS 228

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
           HPR  ++ LI A  DL  +  + H+P QSG + +LK+M R +T   YR+IIDRIR   PD
Sbjct: 229 HPRYFTERLIDACADLPKVCEHFHIPFQSGDNELLKAMARGYTVERYRRIIDRIRKRMPD 288

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
            AIS+D IV FPGETD  +R T+ L+++IG+ Q  +  YSPR  TP ++   Q+ E VK 
Sbjct: 289 AAISADVIVAFPGETDAQYRRTLALIEEIGFDQVNTAAYSPRPNTPAADWNNQLSEEVKV 348

Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSPWLQSVVLNSKN--- 444
            RL  +   +       N    G+I +VL E  + K+  +L+GR+   +    ++++   
Sbjct: 349 ARLQEINALVESTAKERNARYAGRIEQVLAEGMNPKDPSQLMGRTRTNRLTFFSAESPQG 408

Query: 445 --HNIGDIIKVRITDVKISTLYGELVV 469
             H  GD++ VRI  V+  +L G  V+
Sbjct: 409 ITHRAGDLVDVRIDQVRSFSLTGTPVI 435


>gi|159037038|ref|YP_001536291.1| RNA modification protein [Salinispora arenicola CNS-205]
 gi|229890640|sp|A8M7W6|MIAB_SALAI RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|157915873|gb|ABV97300.1| RNA modification enzyme, MiaB family [Salinispora arenicola
           CNS-205]
          Length = 502

 Score =  278 bits (711), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 162/417 (38%), Positives = 243/417 (58%), Gaps = 21/417 (5%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIV-LNTCHIREKAAEKVYS 82
           P+ + V++YGCQMNV+DS R+  +    GY R    DD   +V  NTC +RE A  ++Y 
Sbjct: 11  PRTYQVRTYGCQMNVHDSERIAGLLEQAGYLRAGDADDVPDVVVFNTCAVRENADNRLYG 70

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            LG++R  K+        + + V GC+AQ +  EI+RR+P V+VV G      LP LLER
Sbjct: 71  NLGQLRPSKDRHPG----MQIAVGGCLAQKDRSEIVRRAPWVDVVFGTHNIGSLPVLLER 126

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT--AFLTIQEGCDKFCTFCVVPYTRG 200
           AR      +    VE   E L +       +R  T   +++I  GC+  CTFC+VP  RG
Sbjct: 127 ARH-----NAAAEVE-ILESLDVFPSTLPTRRESTYAGWVSISVGCNNTCTFCIVPALRG 180

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKG 259
            E  R    V+ E R L+D GV E+TLLGQNVN++   G++ G++  F  LL +  +I G
Sbjct: 181 KERDRRPGDVLSEVRALVDEGVLEVTLLGQNVNSY---GIEFGDRYAFGKLLRACGDIDG 237

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           L R+R+T+ HP+D +D +I A  +   +   LH+P+QSGSD +L++M R + +  Y  II
Sbjct: 238 LERVRFTSPHPKDFTDDVIAAMAETPNVCHSLHMPLQSGSDDVLRAMRRSYRSERYLGII 297

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
           +++R+  PD AI++D IVGFPGET+ DF  T+D+V    ++ AF+F+YS R GTP + M 
Sbjct: 298 EKVRAAMPDAAITTDIIVGFPGETEADFERTLDVVRSARFSSAFTFQYSKRPGTPAATMA 357

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE----KHGKEKGKLVGRS 432
           +Q+ + V  ER   L   + E   + N   VG+ +EVL+     +  +  G+L GR+
Sbjct: 358 DQLPKPVVQERYERLVACVEEITWAENRRLVGETVEVLVAVGEGRKDERTGRLSGRA 414


>gi|154504378|ref|ZP_02041116.1| hypothetical protein RUMGNA_01882 [Ruminococcus gnavus ATCC 29149]
 gi|153795307|gb|EDN77727.1| hypothetical protein RUMGNA_01882 [Ruminococcus gnavus ATCC 29149]
          Length = 494

 Score =  278 bits (711), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 166/453 (36%), Positives = 253/453 (55%), Gaps = 23/453 (5%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P  F V ++GCQMN  DS ++  +    GY      + AD ++ NTC +RE A +KVY  
Sbjct: 52  PLTFHVTTFGCQMNARDSEKLTGILEQIGYVEEEEENQADFVIYNTCTVRENANQKVYGH 111

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQ-AEGEEILRRS-PIVNVVVGPQTYYRLPELLE 141
           LG++  +K    K+   +L+ + GC+ Q  E  E L++S   V+++ G    ++  EL+ 
Sbjct: 112 LGQLNRVK----KKNPHMLIGLCGCMMQEPEVVEKLKKSYRFVDLIFGTHNIFKFAELVA 167

Query: 142 RARFGKRVV-----DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
                 R+V     DTD  VED             RK    + + I  GC+ FC++C+VP
Sbjct: 168 TRLESDRMVIDIWKDTDKIVEDL---------PSERKFSFKSGVNIMFGCNNFCSYCIVP 218

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256
           Y RG E SR+   ++ E   L+ +GV E+ LLGQNVN++ GK L+ E  TF+ LL  + +
Sbjct: 219 YVRGRERSRNPKDIIREIESLVADGVVEVMLLGQNVNSY-GKTLE-EPMTFAQLLQEIEK 276

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           I+GL R+R+ TSHP+D+SD LI+       +  +LHLPVQSGS RIL+ MNRR+T   Y 
Sbjct: 277 IEGLERIRFMTSHPKDLSDELIEVMAQSQKICKHLHLPVQSGSTRILEKMNRRYTKEHYL 336

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
            ++++I++  PDI++++D IVGFPGET++DF+ T+D+V K+ Y  AF+F YS R GTP +
Sbjct: 337 GLVEKIKAAVPDISLTTDIIVGFPGETEEDFQETLDVVRKVRYDSAFTFIYSKRTGTPAA 396

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GRSPWL 435
            + EQV E +  +R   L K+++             +  VL+E        LV GR    
Sbjct: 397 VLEEQVPEEIVKDRFDRLLKEVQSISAEVCSVHTKTVQRVLVESVNDHDDSLVTGRMSNN 456

Query: 436 QSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
             V    +   +G ++ VR+   K     GE+V
Sbjct: 457 LLVHFPGEKDLVGKLVDVRLDTCKGFYYLGEMV 489


>gi|72382710|ref|YP_292065.1| (dimethylallyl)adenosine tRNA methylthiotransferase
           [Prochlorococcus marinus str. NATL2A]
 gi|123732603|sp|Q46JG6|MIAB_PROMT RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|72002560|gb|AAZ58362.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Prochlorococcus marinus
           str. NATL2A]
          Length = 463

 Score =  278 bits (711), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 164/454 (36%), Positives = 258/454 (56%), Gaps = 23/454 (5%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           +++ ++GCQMN  DS RM  +    GY        ADL++ NTC IR+ A +KVYS+LGR
Sbjct: 21  YWITTFGCQMNKADSERMSGILEYMGYYPAEEELKADLVLYNTCTIRDSAEQKVYSYLGR 80

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
               +  R +   +L +VVAGC+AQ EGE +LRR P +++++GPQ   RL  LL +   G
Sbjct: 81  ----QAIRKRSLPNLKIVVAGCLAQQEGESLLRRVPEIDLLMGPQHCNRLESLLNQVDSG 136

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           ++V+ T    E++F    I      R   +  ++ I  GC++ CT+CVVP  RG E SR+
Sbjct: 137 QQVLAT----EEQFILEDITTP--RRDSSICGWVNIIYGCNERCTYCVVPSVRGKEQSRT 190

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL------DGEKCTFSDLLYSLSEIKGL 260
              +  E   L  +G  EITLLGQN++A+ G+        D  + T S LL  + +I+G+
Sbjct: 191 PEAIKSEVEDLAKSGYKEITLLGQNIDAY-GRDFQSQNKEDSAQVTLSYLLKYIHDIEGI 249

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+ TSHPR  +  LI    +L  +  + H+P QSGS++ILK+M R +T   Y+ II+
Sbjct: 250 ERIRFATSHPRYFTKELIDTCSELPKVCEHFHIPFQSGSNKILKNMGRGYTIESYKNIIN 309

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
            I++  P  AIS D IV FPGE++ D+  T+ L+D+I +    +  YSPR  TP +    
Sbjct: 310 YIKAKIPKAAISGDAIVAFPGESETDYEQTLSLIDEIKFDHVNTAAYSPRPNTPAATWPR 369

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRS-----PW 434
           Q++E++K +RL  +   +       N        E+LIE  + K+  +L+GR+      +
Sbjct: 370 QLNEDIKVKRLREINSLVENIAKERNQRYKNTSQEILIENINPKDSFQLMGRTRTNRLTF 429

Query: 435 LQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
               + N   + +G++IKV+ITDV+  +L  +L+
Sbjct: 430 FPRSLKNGVENKLGELIKVKITDVRPFSLTAKLL 463


>gi|320457927|dbj|BAJ68548.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis ATCC 15697]
          Length = 480

 Score =  278 bits (711), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 160/408 (39%), Positives = 249/408 (61%), Gaps = 26/408 (6%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGY-----ERVNSMDDADLIVLNTCHIREKAAEKVY 81
           F + + GCQMNV+DS R+  +  + GY     +++N  +D DL+VLNTC +RE AAE++Y
Sbjct: 27  FHIHTLGCQMNVHDSERIAGVLEANGYVPATEDQIND-NDLDLLVLNTCAVRENAAERMY 85

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             +GR   +K  R     +L + V GC+AQ + ++I   +P V+ V G +    LP+LL+
Sbjct: 86  GTIGRFNRVKLVR----PNLQIAVGGCMAQLDRKKIADTAPWVSAVFGTKNIEDLPKLLD 141

Query: 142 RARF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           + R  GK  V     +     +L        R   +++++ I  GC+  CTFC+VP TRG
Sbjct: 142 QNRATGKAQVQVTEQLRQFPSQLPAA-----RASRISSWVAISVGCNNTCTFCIVPTTRG 196

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E  R    ++DE R+ +  G  E+TLLGQNVN++ G G+ G++  FS LL +   I GL
Sbjct: 197 KEKDRRPGDILDEIRQCVAGGAKEVTLLGQNVNSF-GYGI-GDRYAFSKLLRACGTIDGL 254

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+T+ HP   +D +I A  +   +M  LH P+QSGSDRIL++M R + + ++  I+ 
Sbjct: 255 ERVRFTSPHPAAFTDDVIAAMAETPNIMHQLHFPLQSGSDRILRAMRRSYRSAKFLDILG 314

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           RIR   PD  IS+D IVGFPGET++DF+ TMD+V +  ++ AF+F YSPR GTP + M E
Sbjct: 315 RIREAMPDAQISTDIIVGFPGETEEDFQQTMDVVRQARFSSAFTFIYSPRPGTPAAAM-E 373

Query: 381 QVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKE 424
           Q+  +V   + +RL+ LQ+++ E+ ++  +   G+ +EV+I  K GK+
Sbjct: 374 QIPRDVVQDRFDRLVALQEQITEENLATFE---GRDVEVMITGKLGKK 418


>gi|213691832|ref|YP_002322418.1| RNA modification enzyme, MiaB family [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|229890433|sp|B7GQG0|MIAB_BIFLI RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|213523293|gb|ACJ52040.1| RNA modification enzyme, MiaB family [Bifidobacterium longum subsp.
           infantis ATCC 15697]
          Length = 484

 Score =  278 bits (710), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 160/408 (39%), Positives = 249/408 (61%), Gaps = 26/408 (6%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGY-----ERVNSMDDADLIVLNTCHIREKAAEKVY 81
           F + + GCQMNV+DS R+  +  + GY     +++N  +D DL+VLNTC +RE AAE++Y
Sbjct: 31  FHIHTLGCQMNVHDSERIAGVLEANGYVPATEDQIND-NDLDLLVLNTCAVRENAAERMY 89

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             +GR   +K  R     +L + V GC+AQ + ++I   +P V+ V G +    LP+LL+
Sbjct: 90  GTIGRFNRVKLVR----PNLQIAVGGCMAQLDRKKIADTAPWVSAVFGTKNIEDLPKLLD 145

Query: 142 RARF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           + R  GK  V     +     +L        R   +++++ I  GC+  CTFC+VP TRG
Sbjct: 146 QNRATGKAQVQVTEQLRQFPSQLPAA-----RASRISSWVAISVGCNNTCTFCIVPTTRG 200

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E  R    ++DE R+ +  G  E+TLLGQNVN++ G G+ G++  FS LL +   I GL
Sbjct: 201 KEKDRRPGDILDEIRQCVAGGAKEVTLLGQNVNSF-GYGI-GDRYAFSKLLRACGTIDGL 258

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+T+ HP   +D +I A  +   +M  LH P+QSGSDRIL++M R + + ++  I+ 
Sbjct: 259 ERVRFTSPHPAAFTDDVIAAMAETPNIMHQLHFPLQSGSDRILRAMRRSYRSAKFLDILG 318

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           RIR   PD  IS+D IVGFPGET++DF+ TMD+V +  ++ AF+F YSPR GTP + M E
Sbjct: 319 RIREAMPDAQISTDIIVGFPGETEEDFQQTMDVVRQARFSSAFTFIYSPRPGTPAAAM-E 377

Query: 381 QVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKE 424
           Q+  +V   + +RL+ LQ+++ E+ ++  +   G+ +EV+I  K GK+
Sbjct: 378 QIPRDVVQDRFDRLVALQEQITEENLATFE---GRDVEVMITGKLGKK 422


>gi|182412618|ref|YP_001817684.1| RNA modification protein [Opitutus terrae PB90-1]
 gi|177839832|gb|ACB74084.1| RNA modification enzyme, MiaB family [Opitutus terrae PB90-1]
          Length = 468

 Score =  278 bits (710), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 165/462 (35%), Positives = 254/462 (54%), Gaps = 32/462 (6%)

Query: 36  MNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRI 95
           MN  DS  +  M  ++GY  V   +D D+++LNTC +R+ A +K     G ++  K    
Sbjct: 1   MNERDSEAVAAMLRARGYRIVADENDCDILLLNTCSVRDAAEQKAIGKAGYLQQRK---- 56

Query: 96  KEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR--------FGK 147
           K+  D ++ + GC+AQ  G  +L + P V+++VG Q ++++P  L+  R         G+
Sbjct: 57  KKQPDFVLGILGCMAQNRGASLLDQLPDVDLIVGTQKFHQVPGYLDNLRAARDAGVPIGE 116

Query: 148 RVVD-----------------TDYSVEDKFERL-SIVDGGYNRKRGVTAFLTIQEGCDKF 189
            +VD                  D   + +   L S + G       +TAF++IQ+GC+  
Sbjct: 117 TIVDIGEEAGSQNTIKDHLLPQDSDSDSQPSTLNSQLRGAAAPPPQITAFVSIQQGCNMD 176

Query: 190 CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW--RGKGLDGEKCTF 247
           C FC+VP TRG E SR +  +V E  +L   GV E+TLLGQ V ++  R          F
Sbjct: 177 CAFCIVPKTRGDERSRPMDDIVRECEQLAARGVREVTLLGQIVTSYGRRDYTHTNGISPF 236

Query: 248 SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307
             LL  +  + G+ R+R+T+ HPR   D L+ A+G L  L  Y+HLP+QSGS+RIL++MN
Sbjct: 237 VQLLERVHALDGIERIRFTSPHPRGFKDDLVAAYGRLPKLCGYVHLPLQSGSNRILRAMN 296

Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           R +T   YR+I+D +R+VR D+  S+D IVGFPGETD+DF  T +L +   Y  A+ FKY
Sbjct: 297 RPYTRERYREIVDALRAVRSDMYFSTDVIVGFPGETDEDFEQTRELFEACNYDMAYVFKY 356

Query: 368 SPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK 427
           S R GTP +   +QV E+VK +R   L + LR+     N   +  + EVL+E   K   +
Sbjct: 357 SVRTGTPAAERGDQVPEDVKEQRNQLLLELLRQNSERRNALLLDTVEEVLVEGPDKTGQR 416

Query: 428 LVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
             GR+   +  +  +    +G ++ +RIT   +STLYGEL++
Sbjct: 417 FTGRTRGNRVCIFEATPDLVGRLVSLRITRASVSTLYGELML 458


>gi|293397289|ref|ZP_06641561.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Serratia odorifera DSM
           4582]
 gi|291420207|gb|EFE93464.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Serratia odorifera DSM
           4582]
          Length = 365

 Score =  277 bits (709), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 140/318 (44%), Positives = 205/318 (64%), Gaps = 6/318 (1%)

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           +VD  +   +KF+RL        R  G TA+++I EGC+K+CTFCVVPYTRG E+SR   
Sbjct: 12  IVDISFPEIEKFDRLP-----EPRAEGPTAYVSIMEGCNKYCTFCVVPYTRGEEVSRPSD 66

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
            V+ E  +L   GV E+ LLGQNVNA+RG   DG  C+F++LL  ++ I G+ R+R+TTS
Sbjct: 67  DVLFEIAQLAAQGVREVNLLGQNVNAYRGATYDGGVCSFAELLRLVAAIDGIDRIRFTTS 126

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
           HP + +D +I  + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II ++R  RP+
Sbjct: 127 HPIEFTDDIIAVYEDTPELVSFLHLPVQSGSDRILTMMKRAHTALEYKAIIRKLRKARPN 186

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           I ISSDFI+GFPGE+  DF  TM+L+ ++ +  +FSF YS R GTP ++M++ V E+ K 
Sbjct: 187 IQISSDFIIGFPGESQADFEQTMNLIAEVNFDTSFSFIYSSRPGTPAADMVDDVSEDEKK 246

Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNSKNHNI 447
           +RL  LQ+++ +Q + F+   +G +  +L+E   ++   +L GR+   + V        I
Sbjct: 247 QRLYILQERILQQAMRFSRQMLGTVQRILVEGTSRKSVMELAGRTECNRMVNFEGTPDMI 306

Query: 448 GDIIKVRITDVKISTLYG 465
           G  + V IT+V  ++L G
Sbjct: 307 GQFVDVEITEVLTNSLRG 324


>gi|296454331|ref|YP_003661474.1| MiaB family RNA modification protein [Bifidobacterium longum subsp.
           longum JDM301]
 gi|296183762|gb|ADH00644.1| RNA modification enzyme, MiaB family [Bifidobacterium longum subsp.
           longum JDM301]
          Length = 479

 Score =  277 bits (709), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 160/407 (39%), Positives = 248/407 (60%), Gaps = 24/407 (5%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGY----ERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           F + + GCQMNV+DS R+  +  + GY    E   + +D DL+VLNTC +RE AAE++Y 
Sbjct: 26  FHIHTLGCQMNVHDSERIAGVLEANGYVPATEGQINDNDLDLLVLNTCAVRENAAERMYG 85

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +GR   +K  R     +L + V GC+AQ + ++I   +P V+ V G +    LP+LL++
Sbjct: 86  TIGRFNRVKLVR----PNLQIAVGGCMAQLDRKKIADTAPWVSAVFGTKNIEDLPKLLDQ 141

Query: 143 ARF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
            R  GK  V     +     +L        R   +++++ I  GC+  CTFC+VP TRG 
Sbjct: 142 NRATGKAQVQVTEQLRQFPSQLPAA-----RASRISSWVAISVGCNNTCTFCIVPTTRGK 196

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E  R    ++DE R+ + +G  E+TLLGQNVN++ G G+ G++  FS LL +   I GL 
Sbjct: 197 EKDRRPGDILDEIRQCVADGAKEVTLLGQNVNSF-GYGI-GDRYAFSKLLRACGTIDGLE 254

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+T+ HP   +D +I A  +   +M  LH P+QSGSDRIL++M R + + ++  I+ R
Sbjct: 255 RVRFTSPHPAAFTDDVIAAMAETPNIMHQLHFPLQSGSDRILRAMRRSYRSAKFLDILGR 314

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           IR   PD  IS+D IVGFPGET++DF+ TMD+V +  ++ AF+F YSPR GTP + M EQ
Sbjct: 315 IREAMPDAQISTDIIVGFPGETEEDFQQTMDVVRQARFSSAFTFIYSPRPGTPAAAM-EQ 373

Query: 382 VDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKE 424
           +  +V   + +RL+ LQ+++ E+ ++  +   G+ +EV+I  K GK+
Sbjct: 374 IPRDVVQDRFDRLVALQEQITEENLATFE---GRDVEVMITGKLGKK 417


>gi|290968596|ref|ZP_06560134.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Megasphaera genomosp.
           type_1 str. 28L]
 gi|290781249|gb|EFD93839.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Megasphaera genomosp.
           type_1 str. 28L]
          Length = 442

 Score =  277 bits (709), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 159/444 (35%), Positives = 249/444 (56%), Gaps = 15/444 (3%)

Query: 28  FVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRI 87
           ++ +YGCQMN  DS R      + GY     MD AD+I+LNTC +RE A  K    LG+I
Sbjct: 10  YIATYGCQMNSSDSERYAGQLEALGYRLTEEMDVADVILLNTCCVRETAEGKT---LGKI 66

Query: 88  RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147
             LK+ + +   +L++ V GC+AQ   E +  R+P +++V+G    ++L  LL+  R GK
Sbjct: 67  GELKHYK-ERNPELVIAVTGCMAQEWQERLFERAPHIDLVIGTHNIHKLTALLQE-RQGK 124

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
               + +++       +  D    R     A++ I  GC+KFCT+C+VP+ RG E+SR +
Sbjct: 125 ----SGHALAADMSLPAFHDLPTKRFHKFFAWVPIMNGCNKFCTYCIVPHVRGREVSRPV 180

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT-FSDLLYSLSEIKGLVRLRYT 266
           +++V E  +L  +G  E+TLLGQNVN++   GLD    T F  L+ +L  + G+ R+RY 
Sbjct: 181 AEIVREVAQLGKDGYKEVTLLGQNVNSY---GLDLRDGTDFGTLVEALETVPGVERIRYM 237

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
           TSHP+DM+  +I A      ++ +LHLP+QSGS+ +LK MNR +T   Y  +I   R   
Sbjct: 238 TSHPKDMTPAMIDAIAAGSRVVHHLHLPIQSGSNAMLKRMNRGYTVEHYLDLIAYARKKM 297

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
            D+ +++D IVGFPGET+  F+ T+ L+ ++GY  A++F YSPR GTP +   +QV    
Sbjct: 298 SDLVLTTDLIVGFPGETEAMFQETLQLIRQVGYDMAYTFIYSPRTGTPAATWPDQVAAAE 357

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVLNSKNH 445
           K+ RL CL     E  ++ N    G+  EV++E   K   +   GR+   + ++      
Sbjct: 358 KSRRLQCLMDIQNETSLALNREMEGRSYEVIVEGPTKNDARHWFGRTRGNKMIIWEEDGS 417

Query: 446 -NIGDIIKVRITDVKISTLYGELV 468
             IGD   V +   +   L G ++
Sbjct: 418 VQIGDTADVMVDKGQTWVLKGHVI 441


>gi|88801432|ref|ZP_01116960.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Polaribacter irgensii
           23-P]
 gi|88782090|gb|EAR13267.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Polaribacter irgensii
           23-P]
          Length = 484

 Score =  277 bits (709), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 171/461 (37%), Positives = 258/461 (55%), Gaps = 26/461 (5%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F++SYGCQMN+ DS  +  +   +GY     +++ADL+++NTC IREKA   V   L
Sbjct: 27  KKLFIESYGCQMNMNDSEIVAAILDKEGYNTTQILEEADLVLVNTCSIREKAETSVRKRL 86

Query: 85  GRIRNLK--NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +   +K  N ++K G      V GC+A+   E+ L    IV++VVGP  Y  LP LL  
Sbjct: 87  QKYNAVKKINPKMKVG------VLGCMAERLKEKFLEEEKIVDLVVGPDAYKDLPNLLSE 140

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
              G+  V+   S ++ +  +S V    N   GVTAF++I  GCD  CTFCVVP+TRG E
Sbjct: 141 VSEGRSAVNVILSKDETYGDISPVRLNTN---GVTAFVSITRGCDNMCTFCVVPFTRGRE 197

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNA--WRGKGL--DGEKCT---------FSD 249
            SR    +++E + ++D    EITLLGQNV++  W G GL  D +K T         F++
Sbjct: 198 RSRDPKSILEEIQSMVDQNFKEITLLGQNVDSFLWFGGGLKKDFKKATEMARATAIGFAE 257

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
           LL   +      R R++TS+P+DMS  +I        +  YLHLPVQSGS+ +LK+MNR+
Sbjct: 258 LLDMCATKFPKTRFRFSTSNPQDMSLDVIHVMAKHINICKYLHLPVQSGSNAMLKAMNRQ 317

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369
           HT  EY  ++D I  + P++++S D IVGF GET++D + T+ L+  + Y   F F YS 
Sbjct: 318 HTREEYMTLVDNIFKIIPEMSLSQDMIVGFCGETEEDHQDTLALMQYVKYDFGFMFTYSE 377

Query: 370 RLGT-PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GK 427
           R GT  G+ M + V + VK  RL  +    +E  +      +G+I E LIE   K+   +
Sbjct: 378 RPGTLAGNKMDDDVPQPVKKRRLQEIIDLQQEHALFRTQQHLGKIEEFLIEGTSKKNPDE 437

Query: 428 LVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
              R+      V   +++ +GD + V++ D   +TL G +V
Sbjct: 438 WKARNTQNTIAVFKKEHYKLGDFVNVKVEDCTSATLKGTVV 478


>gi|228471151|ref|ZP_04055970.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Porphyromonas uenonis
           60-3]
 gi|228307091|gb|EEK16165.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Porphyromonas uenonis
           60-3]
          Length = 452

 Score =  277 bits (709), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 161/450 (35%), Positives = 258/450 (57%), Gaps = 17/450 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +R ++++YGCQMNV DS  +       GY+  + +D+AD +++NTC +R+ A  ++   +
Sbjct: 10  KRVYIETYGCQMNVADSEIIAAQMQLAGYQLTDQIDEADAVLINTCSVRDNAELRI---V 66

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R+ NL   R + G   +V V GC+A+   +E L ++  V++V GP  Y  LP L+  A 
Sbjct: 67  RRLDNLNGQRRRSGHPQIVGVLGCMAE-RVQETLIQNHGVDLVAGPDAYTDLPHLIAAAE 125

Query: 145 FGKRVVDTDYSVEDKF-ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            G+  +  + S  + + + + I   G +    ++ F++I  GCD FCT+C+VPYTRG E 
Sbjct: 126 AGEPAISIELSKSETYSDVIPIRLPGLH----ISGFVSIMRGCDNFCTYCIVPYTRGRER 181

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR    ++ E +++   G  E+TLLGQNVN++      G   TF+DLL S++E    +R+
Sbjct: 182 SRDPESIIREVQRMAQEGYREVTLLGQNVNSYCWHTETGASYTFADLLRSVAEAVPTMRI 241

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+T+ HP+DM D  ++       +  ++H P+QSGS+RIL+ M RR+T   Y + ++RIR
Sbjct: 242 RFTSPHPKDMKDETLEVMSRYHNICSHIHFPLQSGSNRILERMRRRYTREWYLERVERIR 301

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML-EQV 382
              PD  +S+D   GF GET++DF+ T++++       AF FKYS R GT  S+ L + V
Sbjct: 302 DYMPDCGLSTDVFCGFSGETEEDFQETLEVMRLARLDSAFMFKYSERPGTYASHHLVDDV 361

Query: 383 DENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSV 438
            E VK ERL   + LQ +L    +  N+  VG+  EVLIE + K       GR+   + +
Sbjct: 362 PEEVKVERLNRMIALQNEL---SLESNERDVGKSFEVLIEGYSKRSHDDFFGRTQQNKVI 418

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           V    N+ IG ++ VR+  V  +T+ G  V
Sbjct: 419 VFPKGNNQIGKLVTVRVERVTSATMIGSEV 448


>gi|307564743|ref|ZP_07627271.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella amnii CRIS
           21A-A]
 gi|307346465|gb|EFN91774.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella amnii CRIS
           21A-A]
          Length = 442

 Score =  277 bits (709), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 159/453 (35%), Positives = 264/453 (58%), Gaps = 21/453 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ ++++YGCQMNV DS  +  +    GY+     DDAD I +NTC IRE A  K+Y+ L
Sbjct: 2   KKLYIETYGCQMNVADSEVVASVMKMAGYDVCEKEDDADAIFINTCSIRENAENKIYNRL 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             +   K    ++G DL++ V GC+A+   ++++      N+V GP +Y  LP+++ +  
Sbjct: 62  ESLHAEK----RKGRDLILGVLGCMAERVRDDLIDNHH-ANLVCGPDSYLNLPDMIAQCE 116

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G    D + S  + +  +     G N+   V+ F++I  GC+ FC +C+VP+TRG E S
Sbjct: 117 NGNNACDIELSTTETYRNIIPQRIGGNK---VSGFVSIMRGCNNFCHYCIVPFTRGRERS 173

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK----CTFSDLLYSLSEIKGL 260
           R +  ++ E   L + G  E+TLLGQNVN++ G   +G++     +F++LL  +++    
Sbjct: 174 RDVESILQEVNDLKERGFKEVTLLGQNVNSY-GLLPNGKRPKNGTSFAELLQKVAQSVPN 232

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
           +R+R+TTS+P DM++ ++      D L  ++H P QSGS+ +LK MNR++T  EY + + 
Sbjct: 233 MRVRFTTSNPEDMTEDILHVVAQEDNLCNHIHFPAQSGSNTVLKDMNRKYTREEYLEKVA 292

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML- 379
            IRS+ P+  +++D  VG+  E+ +D   T+DLV ++G+  AF FKYS R GT  +  L 
Sbjct: 293 AIRSIIPNCGLTTDIFVGYHNESIEDHHQTLDLVREVGFDSAFMFKYSERPGTYAAKHLP 352

Query: 380 EQVDENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWL 435
           + V E  K  R   L+ LQ ++  +Q   N    G+  ++LIE+ GK    +L+GR+P  
Sbjct: 353 DNVSEQEKIRRLNELIHLQTQISAEQ---NKKDEGKEFDILIERFGKRSHDQLMGRNPQN 409

Query: 436 QSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           ++VV+    H+IG+ + VRI     +TL GE V
Sbjct: 410 KAVVIPKGKHHIGETVHVRIISSTSATLIGEEV 442


>gi|257066511|ref|YP_003152767.1| RNA modification enzyme, MiaB family [Anaerococcus prevotii DSM
           20548]
 gi|256798391|gb|ACV29046.1| RNA modification enzyme, MiaB family [Anaerococcus prevotii DSM
           20548]
          Length = 449

 Score =  277 bits (709), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 166/450 (36%), Positives = 256/450 (56%), Gaps = 21/450 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + + + ++GCQMN +DS R+  +    GY +      AD I+ NTC +RE A  K+Y  +
Sbjct: 14  KTYNITTFGCQMNEHDSERISYILEDLGYTKTEDRSSADFILFNTCLVRENAELKLYGQV 73

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
             ++ LK    KE  + ++ V+GC+ Q     E I++    V+++ G +    L +L+ R
Sbjct: 74  SSLKKLK----KEHPEKIIAVSGCMMQTSTAREVIIKDHKEVDIIFGTKNINSLVDLIFR 129

Query: 143 -ARFGKRVVD--TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
                +RV+D  TD  V+D +         YN      AF+ I  GCD FC++C+VP +R
Sbjct: 130 YLETNERVIDISTD-DVKDDY-------VNYNTLNDFQAFVNIMTGCDNFCSYCIVPESR 181

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G E SR  S ++ E   L++ G  EITLLGQNVN++  K       TF +LL  +S+I+G
Sbjct: 182 GREESRRPSAILAEVEHLVEEGYKEITLLGQNVNSYGNKA--DFDMTFPELLEKISQIEG 239

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           L RLR+TTSHP+D+SD LI+   + D +  Y HLP+QSGS ++LK MNR++   +Y +  
Sbjct: 240 LKRLRFTTSHPKDLSDELIEVIKNNDNICNYFHLPLQSGSSKVLKDMNRKYDQEKYIERA 299

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            ++R   P IAIS+D IVG+P ET++DF+ T+ +  +I +  AF+FKYSPR  T  +  L
Sbjct: 300 KKLREEIPGIAISTDIIVGYPTETEEDFKETLKVCREIEFDSAFTFKYSPRPKTRAAK-L 358

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSV 438
             +D+ +  +R   L   +       N   +G+ +EVL+E   K     L GR+   + V
Sbjct: 359 TPIDDEIVQDRFDRLLDTIYPIFNEKNKEYIGKTVEVLLESESKNNPDILTGRTDTFKLV 418

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            + +    IG+I+KV+ITD    T+ GELV
Sbjct: 419 HVKASKKLIGEIVKVKITDNTSFTISGELV 448


>gi|225374900|ref|ZP_03752121.1| hypothetical protein ROSEINA2194_00523 [Roseburia inulinivorans DSM
           16841]
 gi|225213283|gb|EEG95637.1| hypothetical protein ROSEINA2194_00523 [Roseburia inulinivorans DSM
           16841]
          Length = 480

 Score =  277 bits (708), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 168/455 (36%), Positives = 256/455 (56%), Gaps = 26/455 (5%)

Query: 14  VSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDD-ADLIVLNTCHI 72
           V+++ +Q   P  F V ++GCQMN  DS ++  +    GY  V + D+ AD ++ NTC +
Sbjct: 34  VAELAEQKGAPLTFCVTTFGCQMNARDSEKLVGILEKIGY--VEAPDEKADFVIYNTCTV 91

Query: 73  REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGP 130
           RE A  KVY  LG +   K    K+   +++ + GC+ Q     E+I      V+++ G 
Sbjct: 92  RENANNKVYGRLGYLHGFK----KKNPYMMIGLCGCMMQEPTVVEKIQNSYRFVDLIFGT 147

Query: 131 QTYYRLPELLERARFGKRVV-----DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEG 185
              Y+  EL+  A     +      DTD  VED       V+  Y+ K GV     I  G
Sbjct: 148 HNIYKFAELIVTALESDSMTIDIWKDTDKIVED-----LPVERKYSFKSGVN----IMFG 198

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C+ FC++C+VPY RG E SR   ++V E   L+ +GV E+ LLGQNVN++ G+ L+    
Sbjct: 199 CNNFCSYCIVPYVRGRERSREPKEIVREIEHLVQDGVVEVMLLGQNVNSY-GRNLE-HPM 256

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
           TF+ LL  + +I+GL R+R+ TSHP+D+SD LI+   +   +  +LHLP+QSGS RILK 
Sbjct: 257 TFAQLLQEIEKIEGLERIRFMTSHPKDLSDELIEVMKNSKKICNHLHLPLQSGSSRILKI 316

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           MNR +    Y +++D+IR+  PDIA+++D IVGFPGET++DF  TMD+V ++ Y  AF+F
Sbjct: 317 MNRHYDKEHYLELVDKIRAAVPDIALTTDIIVGFPGETEEDFEETMDVVRRVRYDSAFTF 376

Query: 366 KYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKE 424
            YS R GTP + M +Q+ E V  ER   L  +++           GQ + VL+E+ +G++
Sbjct: 377 IYSKRTGTPAATMDDQIPEEVIKERFDRLLHEVQTISAEKAGKLTGQTLPVLVEEVNGQD 436

Query: 425 KGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVK 459
              + G+     +V        IG I  V + + K
Sbjct: 437 ASLVTGKLTNNSTVHFPGTADMIGTIQNVVLEECK 471


>gi|262184302|ref|ZP_06043723.1| 2-methylthioadenine synthetase [Corynebacterium aurimucosum ATCC
           700975]
          Length = 487

 Score =  276 bits (707), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 149/408 (36%), Positives = 231/408 (56%), Gaps = 22/408 (5%)

Query: 36  MNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRI 95
           MNV+DS R+  +    GY    +  + DLIV NTC +RE A +++Y  LG ++  K +  
Sbjct: 1   MNVHDSERISGLLEEAGYSAAPNGTEPDLIVFNTCAVRENADKRLYGTLGALKKTKENHP 60

Query: 96  KEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYS 155
                + + V GC+AQ + + +L  +P V+ V G      LP LLERAR      +    
Sbjct: 61  G----MQIAVGGCLAQKDKDTVLDHAPWVDAVFGTHNMAALPALLERARHND---EAQVE 113

Query: 156 VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEAR 215
           + D  E    V     R+     ++++  GC+  CTFC+VP  RG E  R    ++ E +
Sbjct: 114 IVDALEAFPSVLPA-KRESAYAGWVSVSVGCNNTCTFCIVPSLRGKEEDRRPGDILAEVQ 172

Query: 216 KLIDNGVCEITLLGQNVNAW----RGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPR 271
            L+D GV E+TLLGQNVNA+        L  ++  FS LL  + +I+GL RLR+T+ HP 
Sbjct: 173 ALVDQGVSEVTLLGQNVNAYGVNFADPDLPRDRFAFSKLLREVGKIEGLERLRFTSPHPA 232

Query: 272 DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAI 331
           + +  +I A  +   + P LH+P+QSGSD++LK M R +   ++  I+D +R   P  AI
Sbjct: 233 EFTSDVIDAMAETPAVCPQLHMPLQSGSDKVLKDMRRSYRTKKFLGILDEVREKMPHAAI 292

Query: 332 SSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV---KA 388
           ++D IVGFPGET++DF AT+++V +  +A AF+F+YSPR GTP + M  Q+ + V   + 
Sbjct: 293 TTDIIVGFPGETEEDFEATLEVVRRARFASAFTFQYSPRPGTPAAEMENQIPKEVVQERF 352

Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG----KLVGRS 432
           ERL+ LQ  ++ ++   N   VG  +E+L++  G  K     +L GR+
Sbjct: 353 ERLVALQDSIQAEE---NAKLVGTDVELLVQAEGGRKSAETHRLTGRA 397


>gi|229829135|ref|ZP_04455204.1| hypothetical protein GCWU000342_01220 [Shuttleworthia satelles DSM
           14600]
 gi|229792298|gb|EEP28412.1| hypothetical protein GCWU000342_01220 [Shuttleworthia satelles DSM
           14600]
          Length = 534

 Score =  276 bits (707), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 163/447 (36%), Positives = 254/447 (56%), Gaps = 16/447 (3%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           F V ++GCQMN  DS ++  +    GY    S ++AD ++ NTC +RE A  KVY  LG 
Sbjct: 97  FCVTTFGCQMNARDSEKLRGILEKIGYVEKES-EEADFVIYNTCTVRENANNKVYGRLGY 155

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           +   K    K    +++ + GC+ Q +   ++I +    V+++ G    Y+  EL   A 
Sbjct: 156 LHGFK----KTNPGMMIALCGCMMQEDVVVDKIRQSYRFVDLIFGTHNIYKFAELAYEAL 211

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
              +++   +   D+      V+  Y+ K GV     I  GCD FCT+C+VPY RG E S
Sbjct: 212 QADQMIIDIWKDADRIVENLPVERKYSFKSGVN----IMFGCDNFCTYCIVPYVRGRERS 267

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R   +++ E  +L+D+GV E+ LLGQNVN++ G GL+ +  +F+ LL  + +I+GL R+R
Sbjct: 268 RRPVEIIREIERLVDDGVVEVMLLGQNVNSY-GAGLE-DHMSFAQLLSEIEKIEGLARIR 325

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           + TSHP+D+SD LI      D +  ++HLP+QSGS R+L  MNRR+T   Y  + DRIR 
Sbjct: 326 FMTSHPKDLSDELIDVIAASDKICHHVHLPLQSGSSRLLARMNRRYTKESYLALADRIRK 385

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML--EQV 382
             P+++I++D IVGFPGE ++DF  TMD+V ++GY  AF+F YSPR GTP +     +Q 
Sbjct: 386 RIPNVSITTDIIVGFPGEEEEDFEDTMDVVRQVGYDSAFTFVYSPRTGTPAAKWAREDQT 445

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GRSPWLQSVVLN 441
             +V  +R   L  + ++   +   A  G I EVL+E+  ++   LV GR     +V   
Sbjct: 446 PASVIKDRFDRLLAQTQKDARNRAAAYTGSIQEVLVEEVNRQDPALVTGRMSNNSTVHFP 505

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                IG +++VR+T+ +     GE +
Sbjct: 506 GGADLIGRLVQVRLTECRGFYYIGEQI 532


>gi|327312819|ref|YP_004328256.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Prevotella denticola
           F0289]
 gi|326945460|gb|AEA21345.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Prevotella denticola
           F0289]
          Length = 442

 Score =  276 bits (707), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 156/450 (34%), Positives = 267/450 (59%), Gaps = 15/450 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ ++++YGCQMNV DS  +  +    GY+   + ++AD I LNTC +RE A  K+Y  L
Sbjct: 2   KKLYIETYGCQMNVADSEVVASVMKMAGYDVCENEEEADAIFLNTCSVRENAENKIYHRL 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             +    ++  K+G  L++ V GC+A+   +++++     N+V GP +Y  LP+++ +  
Sbjct: 62  EAL----HAEQKKGRRLILGVLGCMAERVRDDLIQNHH-ANLVCGPDSYLNLPDMIAQCE 116

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G   +D + S  + +  +     G NR   V+ F++I  GC+ FC +C+VP+TRG E S
Sbjct: 117 NGMNAMDIELSTTETYRDVVPQRIGGNR---VSGFVSIMRGCNNFCHYCIVPFTRGRERS 173

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK----CTFSDLLYSLSEIKGL 260
           R +  ++ E   L D G  E+TLLGQNVN++ G   +G +     +F++LL  +++    
Sbjct: 174 RDVESILKEVHDLHDKGFKEVTLLGQNVNSY-GLLPNGRRPENGTSFAELLRKVAQSVPN 232

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
           +R+R+TTS+P DM++ +++A      L  ++H P QSGS+ +LK MNR++T  +Y   + 
Sbjct: 233 MRVRFTTSNPEDMTEDIVEAIAAEPNLCNHIHFPAQSGSNNVLKLMNRKYTREDYLAKVA 292

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML- 379
            IR + PD  +++D  +G+  ET++DF+ T+ L+ ++G+  AF FKYS R GT  +  L 
Sbjct: 293 AIRRLVPDCGLTTDIFIGYHNETEEDFQQTLSLMREVGFDSAFMFKYSERPGTYAARHLP 352

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSV 438
           + V E+ K  RL  L +   E     N    G+  ++LIE+ GK  + +L+GR+P  ++V
Sbjct: 353 DNVPEDEKIRRLNELIRLQTEISAEQNRKDEGREFDILIERFGKRSREQLMGRTPQNKAV 412

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           V+    H+IG+ ++VRIT    +TL+GE V
Sbjct: 413 VIARGGHHIGETVRVRITGSTSATLFGEEV 442


>gi|325268417|ref|ZP_08135049.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella multiformis
           DSM 16608]
 gi|324989271|gb|EGC21222.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella multiformis
           DSM 16608]
          Length = 442

 Score =  276 bits (707), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 156/450 (34%), Positives = 267/450 (59%), Gaps = 15/450 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ ++++YGCQMNV DS  +  +    GY+   + ++AD I LNTC +RE A  K+Y  L
Sbjct: 2   KKLYIETYGCQMNVADSEVVASVMKMAGYDVCENEEEADAIFLNTCSVRENAENKIYHRL 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             +    ++  K+G  L++ V GC+A+   +++++     N+V GP +Y  LP+++ +  
Sbjct: 62  EAL----HAEQKKGRGLILGVLGCMAERVRDDLIQNHH-ANLVCGPDSYLNLPDMIAQCE 116

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G   +D + S  + +  +     G NR   V+ F++I  GC+ FC +C+VP+TRG E S
Sbjct: 117 NGMNAMDIELSTTETYRDVVPQRIGGNR---VSGFVSIMRGCNNFCHYCIVPFTRGRERS 173

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK----CTFSDLLYSLSEIKGL 260
           R +  ++ E   L D G  E+TLLGQNVN++ G   +G +     +F++LL  +++    
Sbjct: 174 RDVESILKEVHDLHDKGFKEVTLLGQNVNSY-GLLPNGRRPENGTSFAELLRKVAQSVPD 232

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
           +R+R+TTS+P DM++ +++A      L  ++H P QSGS+ +LK MNR++T  +Y   + 
Sbjct: 233 MRVRFTTSNPEDMTEDIVEAVAAEPNLCHHIHFPAQSGSNNVLKLMNRKYTREDYLAKVA 292

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML- 379
            IR + PD  +++D  +G+  ET++DF+ T+ L+ ++G+  AF FKYS R GT  +  L 
Sbjct: 293 AIRRLVPDCGLTTDIFIGYHNETEEDFQQTLSLMREVGFDSAFMFKYSERPGTYAARHLP 352

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSV 438
           + V E  K  RL  L +   E     N    G+  ++LIE+ GK  + +L+GR+P  ++V
Sbjct: 353 DNVPEEEKIRRLNELIRLQTEISAEQNRKDEGREFDILIERFGKRSREQLMGRTPQNKAV 412

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           V+   +H+IG+ ++VRIT    +TL+GE V
Sbjct: 413 VIARGSHHIGETVRVRITGSTSATLFGEEV 442


>gi|291522245|emb|CBK80538.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Coprococcus catus GD/7]
          Length = 481

 Score =  276 bits (707), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 167/442 (37%), Positives = 257/442 (58%), Gaps = 26/442 (5%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           + V ++GCQMN  DS ++  +    GY   ++ +DAD ++ NTC +RE A  +VY  LG+
Sbjct: 47  YHVVTFGCQMNARDSEKLAGILERIGYAETDT-EDADFVIYNTCTVRENANLRVYGRLGQ 105

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAE--GEEILRRSPIVNVVVGPQTYYRLPELLE-RA 143
           ++  K    +   D+L+ + GC+ Q     ++I +    V+++ G    ++L EL++ R 
Sbjct: 106 MKRTK----QRHPDMLIALCGCMMQEPLVVDKIRKSYRHVDIIFGTHNIFKLAELIQTRL 161

Query: 144 RFGKRVVD----TDYSVED-KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
             GK VVD    T+  VED   ER       Y+ K GV        GC+ FC++C+VPY 
Sbjct: 162 NTGKMVVDIWKDTNQIVEDLPNER------KYSFKTGVNIMF----GCNNFCSYCIVPYV 211

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258
           RG E SR    ++ E  + + +GV E+ LLGQNVN++ GK L+    +F+ LL  + +I+
Sbjct: 212 RGRERSREPKDIIREIERDVADGVKEVMLLGQNVNSY-GKNLEN-PISFAKLLQEIEKIE 269

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           GL R+R+ TSHP+D+SD LI   G    +  +LHLP+QSGS RILK MNR++T   Y  +
Sbjct: 270 GLERIRFMTSHPKDLSDELIAVMGQSKKICRHLHLPLQSGSSRILKLMNRKYTKESYLDL 329

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           +DRIR   PDI++++D IVGFPGET++DF  TMD+V+K+G+  AF+F YS R GTP ++M
Sbjct: 330 VDRIRKGCPDISLTTDIIVGFPGETEEDFLETMDVVEKVGFDSAFTFIYSKRTGTPAASM 389

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GRSPWLQS 437
             QV E+V  +R   L K ++++    +    G + +VL+E   +    +V GR      
Sbjct: 390 ENQVPEDVVKDRFDRLLKLVQQKASEASARFTGSVQKVLVEDVNEHDETMVTGRMSNNLL 449

Query: 438 VVLNSKNHNIGDIIKVRITDVK 459
           V        IG I+ V + + K
Sbjct: 450 VHFKGTPDLIGQIVDVHLEECK 471


>gi|315185787|gb|EFU19553.1| RNA modification enzyme, MiaB family [Spirochaeta thermophila DSM
           6578]
          Length = 448

 Score =  276 bits (706), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 159/448 (35%), Positives = 263/448 (58%), Gaps = 17/448 (3%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           ++V++YGCQMN  +S  +       G+ R ++ ++AD++VLNTC +R+ A E++   LG 
Sbjct: 4   YWVETYGCQMNKAESEALIRDLEEAGWGRASAPEEADVVVLNTCTVRQTAEERIAGRLGY 63

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGP---QTYYRLPELLERA 143
            R LK       G  ++V+ GC+A+   EE+L   P V+VVVG     ++ RL  L ERA
Sbjct: 64  YRYLKKH-----GRFILVLMGCMAERMKEEVLEAFPHVDVVVGTFQKNSFVRL--LRERA 116

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
                +     + ED++    +   G     G  AF+ I  GC+ FC++C+VPY RG EI
Sbjct: 117 EDLTLLQQLLLTEEDEYSFEKLHHSGL----GFKAFVPIMHGCNNFCSYCIVPYVRGREI 172

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKGLVR 262
           SR  S++ +E   L++ GV EITLLGQNVN++R    +G++  F+ LL  +      L  
Sbjct: 173 SRRPSEIFEEIEALLEKGVREITLLGQNVNSYRFT-WEGKEMRFAGLLREIVHRFPELPW 231

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LR+ TSHP+D+S+ LI+       +  +LHLPVQ GS+RIL +MNRR+T   Y  +++RI
Sbjct: 232 LRFLTSHPKDLSEELIEVMSASSSICKHLHLPVQHGSNRILGAMNRRYTREHYLNLVERI 291

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+  P IA+++D +VGFPGET++D   T+DL+ ++ +A A+++ Y+PR GT      + +
Sbjct: 292 RTAMPGIALTTDILVGFPGETEEDLELTLDLMRRVRFADAYTYYYNPRKGTRAYEWGDPI 351

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSVVLN 441
              VK ERL  + +  RE  + +    +G++++VL+E+   K + +++ R+   + VV  
Sbjct: 352 PLEVKKERLGRVIRLQRELSLEWKQRKIGRMVDVLVEEVSRKREDEVLARTEQDEMVVFP 411

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELVV 469
           +    IG    V++  ++ +T   + V+
Sbjct: 412 APPERIGRFAHVQLVSLEGNTFRAKEVI 439


>gi|291459240|ref|ZP_06598630.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Oribacterium sp. oral
           taxon 078 str. F0262]
 gi|291418494|gb|EFE92213.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Oribacterium sp. oral
           taxon 078 str. F0262]
          Length = 479

 Score =  276 bits (706), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 164/445 (36%), Positives = 251/445 (56%), Gaps = 17/445 (3%)

Query: 28  FVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRI 87
            V   GCQM+  D+ ++  +    GY      DDAD+I+  TC +RE A +K+Y  +GR+
Sbjct: 48  LVNVIGCQMSAKDAEKLRGILKGCGYREAEREDDADVILFTTCTVRENANQKLYGRIGRL 107

Query: 88  RNLKNSRIKEGGDLLVVVAGCVAQA--EGEEILRRSPIVNVVVGPQTYYRLPELLERA-R 144
           ++    R      +++ + GC+ Q   E E I +R P V ++ G    Y+L ELL R  R
Sbjct: 108 KHQCERR----KGMILGITGCMMQEKDEVETIRKRYPYVKLIFGTHNVYKLAELLYRTLR 163

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
             +R V+         E L  +     RK    A + I  GC+ FCT+C+VPY RG E S
Sbjct: 164 RDERTVEIIDDTSLIVENLPSL-----RKTDFRASVNISYGCNNFCTYCIVPYVRGREKS 218

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           RS  +++ E R L+ +GV EI LLGQNVN++   GLD E+  F +LL  +SEI GL R+R
Sbjct: 219 RSSEEILRECRDLVRDGVKEIMLLGQNVNSY---GLDREELRFPELLRRVSEIPGLRRIR 275

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           + T +P+D S+ LI   G+ + +  ++HLP+QSGS  +L+ MNR +T   Y  ++ RIR 
Sbjct: 276 FMTPNPKDFSEELIDLIGERENICRHIHLPLQSGSTEVLRRMNRHYTKESYLALVRRIRE 335

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             PD+++++D IVGFPGE++ DF+ TMD+V ++G+  AF+F YS R GTP +   E V E
Sbjct: 336 KLPDVSLTTDIIVGFPGESERDFQDTMDVVRRVGFDSAFTFVYSKRSGTPAAKW-EGVSE 394

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNSK 443
            +  +R   L   +RE         +G+++EVL+E+  +EK G L GR      V     
Sbjct: 395 ELVKDRFHRLLDAVRESSAENEGRDIGKVMEVLVEERDREKPGFLTGRLSNNILVHFRGG 454

Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468
              IG+++ V + + +     G L+
Sbjct: 455 ERLIGELVSVELLESRGFYYMGRLL 479


>gi|282879448|ref|ZP_06288185.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella buccalis ATCC
           35310]
 gi|281298420|gb|EFA90852.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella buccalis ATCC
           35310]
          Length = 497

 Score =  276 bits (706), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 169/460 (36%), Positives = 262/460 (56%), Gaps = 32/460 (6%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ ++++YGCQMNV DS  +  +    GYE  +  ++AD I LNTC +RE A  K+Y+  
Sbjct: 50  KKLYIETYGCQMNVADSEVVASVMQMAGYEICDKEEEADAIFLNTCSVRENAENKIYN-- 107

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R+ +L   R K+G +L++ V GC+A+   +++L      ++V GP +Y  LP+++ +A 
Sbjct: 108 -RLDSLHAER-KKGRNLILGVLGCMAERVKDDLLDNHH-TDLVCGPDSYLNLPDMIAQAE 164

Query: 145 FGKRVVDTDYSVEDKF-----ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
            G + +D + S  + +     +RL I   G         F++I  GC+ FC +C+VPYTR
Sbjct: 165 TGNKAIDIELSKTETYKDVVPQRLLIGKIG--------GFVSIMRGCNNFCHYCIVPYTR 216

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW----------RGKGLDGEKCTFSD 249
           G E SR +  ++ E R L D    EITLLGQNVN++           G+ +  E   F  
Sbjct: 217 GRERSRDVESILREVRDLRDKHCKEITLLGQNVNSYCFTIPEHLSATGETIPAETIDFPK 276

Query: 250 LLYSLS-EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
           LL  ++ E+ G VR+R+T+SHP+DMSD  ++   +   +  ++HLPVQSGS++ILK MNR
Sbjct: 277 LLRRVAHEVPG-VRIRFTSSHPKDMSDDTLRVIAEEPNVCKHIHLPVQSGSNKILKLMNR 335

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
           ++T   Y   I+ IR + PD  IS+D  VG+ GET++D + ++ L+  +GY  AF FKYS
Sbjct: 336 KYTVEWYMDRINAIRRIIPDCGISTDMFVGYHGETEEDHQQSLVLMRTVGYDSAFMFKYS 395

Query: 369 PRLGTPGSNML-EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKG 426
            R GT  S  L + V E  K  RL  +     E     N    G+  +VL+E   K  + 
Sbjct: 396 ERPGTYASKHLPDDVPEEEKIRRLNEMIHLQTELSAVSNKKDEGKTFDVLVEGFSKRSRE 455

Query: 427 KLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGE 466
           +L GR+   + VV +  NH+IG+ ++VRI     +TL GE
Sbjct: 456 QLCGRTEQNKMVVFDKVNHHIGETVRVRIVGSTSATLLGE 495


>gi|318040423|ref|ZP_07972379.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Synechococcus
           sp. CB0101]
          Length = 464

 Score =  276 bits (706), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 171/451 (37%), Positives = 261/451 (57%), Gaps = 23/451 (5%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           +++ ++GCQMN  DS RM  +  S GY    +  +ADL++ NTC IR+ A +KVYS+LGR
Sbjct: 21  YWITTFGCQMNKADSERMAGILESMGYSEAQAELEADLVLYNTCTIRDNAEQKVYSYLGR 80

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
               +  R +   +L +VVAGCVAQ EGE +LRR P +++V+GPQ   RL  LL +   G
Sbjct: 81  ----QAQRKRVNPNLTLVVAGCVAQQEGESLLRRVPELDLVMGPQHANRLDVLLAQVEQG 136

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           ++VV T+       E ++       R   +  ++ +  GC++ CT+CVVP  RG E SR 
Sbjct: 137 QQVVATEE--HHILEDITTA----RRDSSICGWVNVIYGCNERCTYCVVPSVRGKEQSRL 190

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG------EKCTFSDLLYSLSEIKGL 260
              +  E   L   G  EITLLGQN++A+ G+ L G       + T +DLL  +  ++GL
Sbjct: 191 PEAIKLEMEGLAAQGFKEITLLGQNIDAY-GRDLPGITPEGRRQHTLTDLLQFVHNVEGL 249

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+ TSHPR  ++ LI A  DL  +  + H+P QSG D +LK+M R +T   YR+II+
Sbjct: 250 ERIRFATSHPRYFTERLIDACADLPKVCEHFHIPFQSGDDDVLKAMARGYTVDRYRRIIE 309

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           RIR   PD +IS+D IV FPGETD  +R T+DL+++IG+ Q  +  YSPR  TP ++  +
Sbjct: 310 RIRERMPDASISADVIVAFPGETDAQYRRTLDLIEEIGFDQVNTAAYSPRPNTPAADWPD 369

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRS-----PW 434
           Q+ E VK ERL  +   +       +    G+  +VL+E  + K+  +++GR+      +
Sbjct: 370 QLSEEVKVERLREINALVERVAKGRSARYAGRTEQVLVEGINPKDGDQVMGRTRTNRLTF 429

Query: 435 LQSVVLNSKNHNIGDIIKVRITDVKISTLYG 465
             +   +      GD++ VRI +V+  +L G
Sbjct: 430 FAAARTDGNRWEPGDLVDVRIDEVRAFSLSG 460


>gi|262197995|ref|YP_003269204.1| RNA modification enzyme, MiaB family [Haliangium ochraceum DSM
           14365]
 gi|262081342|gb|ACY17311.1| RNA modification enzyme, MiaB family [Haliangium ochraceum DSM
           14365]
          Length = 521

 Score =  276 bits (706), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 167/468 (35%), Positives = 267/468 (57%), Gaps = 44/468 (9%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R ++++YGCQMNV DS  +  +    GY R  S D AD+I++NTC +RE+A +KV +   
Sbjct: 45  RVYLETYGCQMNVADSDMLTGILLDAGYRRAASADAADVILINTCAVRERAEDKVLARAR 104

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR- 144
           ++  LK  R     D+++ +AGC+A+   + +L ++P V++V GP +Y R+ ELL RAR 
Sbjct: 105 QLSALKRQR----PDMVLGIAGCMAEHLKDSLLEQAPYVDIVAGPDSYRRMGELLARARD 160

Query: 145 ----------------------FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTI 182
                                  G +VVD      + +E LS   GG     G++ F+TI
Sbjct: 161 LAAPAAGERADSDAPRPVRAPGVGAQVVDVQLDKGETYEGLSGALGG----DGISGFVTI 216

Query: 183 QEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG 242
           Q GCDKFCTFCVVP+TRG E   +  +++ + R  ++ G  E+ LLGQ VN++R      
Sbjct: 217 QRGCDKFCTFCVVPFTRGRERGSAPREILRQVRAYVEAGYREVVLLGQTVNSYRY----- 271

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
           E   F++LL +++ + GL R+R+T+ +P D +  +I A    D +  Y+HLP+QSGSD +
Sbjct: 272 EDVGFAELLRAVARVDGLERIRFTSPYPVDFTAEVIDAIASEDKVCKYVHLPLQSGSDEV 331

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           L  M R +T  ++R I+  +R+  PDIAIS+D +  F GET+ D +AT+ L+ ++ +  A
Sbjct: 332 LARMRRGYTVDDFRAIVAALRARMPDIAISTDILSSFSGETEADHQATLALMRELRFDSA 391

Query: 363 FSFKYSPR-LGTPGSNMLEQVDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLI 418
           F F+YS R L      + + V E  K  RL   + LQ+++  +  +   A +G+   VL+
Sbjct: 392 FMFRYSERSLTYAAKKLPDDVSEADKKRRLAEIIALQERISAEVFA---AQIGKRERVLL 448

Query: 419 EKHGKEKG-KLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYG 465
               K    +LVGR+   +SV++ +    IGDI++V I    ++TL+G
Sbjct: 449 HNRSKRSDQQLVGRTDGFKSVIVPAAGLAIGDIVEVEIERATMATLFG 496


>gi|227485050|ref|ZP_03915366.1| tRNA 2-methylthioadenine synthetase [Anaerococcus lactolyticus ATCC
           51172]
 gi|227236883|gb|EEI86898.1| tRNA 2-methylthioadenine synthetase [Anaerococcus lactolyticus ATCC
           51172]
          Length = 451

 Score =  276 bits (706), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 170/453 (37%), Positives = 267/453 (58%), Gaps = 27/453 (5%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + + + ++GCQMN +DS R+  +    GY        AD I+ NTC +RE A  K+Y   
Sbjct: 16  KTYNITTFGCQMNEHDSERISYILEDLGYVYEEDRKKADFILFNTCLVRENAELKLY--- 72

Query: 85  GRIRNLKNSRIKEGG-DLLVVVAGCVAQAE--GEEILRRSPIVNVVVGPQTYYRLPELLE 141
           G++ +LK  +IKE   + ++ V+GC+ Q E   + I+ +   V+++ G +    L +L+ 
Sbjct: 73  GQVSSLK--KIKESHPEKIIAVSGCMMQTEVARQVIIDKHREVDIIFGTKNINSLSDLIF 130

Query: 142 R-ARFGKRVVD--TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
           R    G+RVVD  TD +V+D F +       YN      A++ I  GCD FC++C+VP +
Sbjct: 131 RYLETGERVVDISTD-NVKDDFVK-------YNTPNHFQAYVNIMTGCDNFCSYCIVPES 182

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258
           RG E SR  S +++E   L++ G  EITLLGQNVN++  K       TF +LL  +++I 
Sbjct: 183 RGREESRRPSSIIEEVEYLVNQGYKEITLLGQNVNSYGNKA--DFNHTFPELLEKVAQIP 240

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
            L RLR+TTSHP+D+SD LIK     D +  Y HLP+QSGSD++LK MNR++T  +Y + 
Sbjct: 241 NLKRLRFTTSHPKDLSDELIKVIKRNDNICKYFHLPLQSGSDKVLKDMNRKYTQEKYLER 300

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
             +++   P+IAIS+D IVG+P ET++DF  T+ +  ++GY  AF+FKYSPR  T  + +
Sbjct: 301 ARKLKEEIPEIAISTDIIVGYPTETEEDFEQTLKVCKEVGYDTAFTFKYSPRPKTRAAKL 360

Query: 379 LEQVDENVKA--ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWL 435
               D+ V+A  ++LL L   +  ++   N   +G+ +EVL+E   K   + L GR+   
Sbjct: 361 TPIDDDIVQARFDKLLDLLYPIFNEK---NQTYIGKTVEVLLESESKNNPEVLTGRTDDY 417

Query: 436 QSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           + V + +    IG+ +KV+IT     T+ G+LV
Sbjct: 418 KLVHVKADKSLIGEFVKVKITGNTSFTISGDLV 450


>gi|325859700|ref|ZP_08172830.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Prevotella denticola CRIS
           18C-A]
 gi|325482626|gb|EGC85629.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Prevotella denticola CRIS
           18C-A]
          Length = 442

 Score =  276 bits (706), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 156/450 (34%), Positives = 267/450 (59%), Gaps = 15/450 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ ++++YGCQMNV DS  +  +    GY+   + ++AD I LNTC +RE A  K+Y  L
Sbjct: 2   KKLYIETYGCQMNVADSEVVASVMKMAGYDVCENEEEADAIFLNTCSVRENAENKIYHRL 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             +    ++  K+G  L++ V GC+A+   +++++     N+V GP +Y  LP+++ +  
Sbjct: 62  EAL----HAEQKKGRRLILGVLGCMAERVRDDLIQNHH-ANLVCGPDSYLNLPDMIAQCE 116

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G   +D + S  + +  +     G NR   V+ F++I  GC+ FC +C+VP+TRG E S
Sbjct: 117 NGMNAMDIELSTTETYRDVVPQRIGGNR---VSGFVSIMRGCNNFCHYCIVPFTRGRERS 173

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK----CTFSDLLYSLSEIKGL 260
           R +  ++ E   L D G  E+TLLGQNVN++ G   +G +     +F++LL  +++    
Sbjct: 174 RDVESILKEVHDLHDKGFKEVTLLGQNVNSY-GLLPNGRRPENGTSFAELLRKVAQSVPD 232

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
           +R+R+TTS+P DM++ +++A      L  ++H P QSGS+ +LK MNR++T  +Y   + 
Sbjct: 233 MRVRFTTSNPEDMTEDIVEAIAAEPNLCNHIHFPAQSGSNNVLKLMNRKYTREDYLAKVA 292

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML- 379
            IR + PD  +++D  +G+  ET++DF+ T+ L+ ++G+  AF FKYS R GT  +  L 
Sbjct: 293 AIRRLVPDCGLTTDIFIGYHNETEEDFQQTLSLMREVGFDSAFMFKYSERPGTYAARHLP 352

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSV 438
           + V E+ K  RL  L +   E     N    G+  ++LIE+ GK  + +L+GR+P  ++V
Sbjct: 353 DNVPEDEKIRRLNELIRLQTEISAEQNRKDEGREFDILIERFGKRSREQLMGRTPQNKAV 412

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           V+    H+IG+ ++VRIT    +TL+GE V
Sbjct: 413 VIARGGHHIGETVRVRITGSTSATLFGEEV 442


>gi|289178890|gb|ADC86136.1| tRNA 2-methylthioadenosine synthase [Bifidobacterium animalis
           subsp. lactis BB-12]
          Length = 515

 Score =  276 bits (705), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 158/416 (37%), Positives = 243/416 (58%), Gaps = 25/416 (6%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNS----MDDADLIVLNTCHIREKAAEKVYS 82
           ++V + GCQMNV+DS R+  +    GY   +       D D++++NTC +RE A E++Y 
Sbjct: 61  YYVHTLGCQMNVHDSERIAGVMEENGYRPASEEQFLAHDVDVVIMNTCAVRENATERMYG 120

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +G+ +  K           + + GC+AQ + E I +R+P V+ V G +    LP LL++
Sbjct: 121 TIGKWKRFK----YRNPHAQIAIGGCMAQLDRERIAKRTPWVDAVFGTKNIEDLPALLDQ 176

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           AR  +    T   V +    L       +R    +A++ I  GC+  CTFC+VP TRG E
Sbjct: 177 ARAAQH---TQVKVNEDLT-LFPSQLPAHRASAHSAWVAISMGCNNTCTFCIVPTTRGKE 232

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
             R    V+ E R+ + NG  EITLLGQNVN++ G G+ G++  FS LL +  EI+GL R
Sbjct: 233 RDRRPGDVLAEIRETVTNGAKEITLLGQNVNSY-GYGI-GDRYAFSKLLRACGEIEGLER 290

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+T+ HP   +D +I A  +   +M  LH P+QSGSDRIL++M R + +  +  I+ +I
Sbjct: 291 VRFTSPHPAAFTDDVIAAMAETPNVMHQLHFPLQSGSDRILRAMRRSYRSERFLGILAKI 350

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R   PD  IS+D IVGFPGET++DF+ T+ +V++  ++ AF+F YSPR GTP + M EQV
Sbjct: 351 REAMPDAQISTDIIVGFPGETEEDFQQTLRVVEEARFSSAFTFIYSPRPGTPAAAM-EQV 409

Query: 383 DENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIE----KHGKEKGKLVGR 431
             +V   + ERLL +Q+++ E+ +   +  VG+ +EV+I     K   E  +  GR
Sbjct: 410 PYDVALDRLERLLAVQERITEEIL---EKFVGRDVEVMITGVTGKKDAETHRYTGR 462


>gi|87125523|ref|ZP_01081368.1| hypothetical protein RS9917_02081 [Synechococcus sp. RS9917]
 gi|86166823|gb|EAQ68085.1| hypothetical protein RS9917_02081 [Synechococcus sp. RS9917]
          Length = 465

 Score =  276 bits (705), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 172/451 (38%), Positives = 263/451 (58%), Gaps = 23/451 (5%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           ++V ++GCQMN  DS RM  +  S GY   ++  +ADL++ NTC IR+ A +KVYS+LGR
Sbjct: 23  YWVTTFGCQMNKADSERMAGILESMGYREASAELEADLVLYNTCTIRDNAEQKVYSYLGR 82

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
               +  R +   +L +VVAGCVAQ EGE +LRR P +++V+GPQ   RL  LL +   G
Sbjct: 83  ----QAQRKRTNPNLTLVVAGCVAQQEGESLLRRVPELDLVMGPQHANRLDVLLAQVEQG 138

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           ++VV T+       E ++       R   +  ++ +  GC++ CT+CVVP  RG E SR 
Sbjct: 139 QQVVATEE--HHILEDITTA----RRDSAICGWVNVIYGCNERCTYCVVPSVRGKEQSRL 192

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG------EKCTFSDLLYSLSEIKGL 260
            + +  E   L   G  EITLLGQN++A+ G+ L G       + T +DLL  + +++GL
Sbjct: 193 PAAIRLEMEGLAAQGFKEITLLGQNIDAY-GRDLPGITPEGRRQHTLTDLLQFVHDVEGL 251

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+ TSHPR  ++ LI A  +L  +  + H+P QSG D +LK+M R +T   YR+IID
Sbjct: 252 ERIRFATSHPRYFTERLIDACAELPKVCEHFHIPFQSGDDAVLKAMARGYTVDRYRRIID 311

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           RIR   PD AIS+D IV FPGET   +R T+DL++ IG+ Q  +  YSPR  TP ++  +
Sbjct: 312 RIRERMPDAAISADVIVAFPGETAAQYRRTLDLIEAIGFDQVNTAAYSPRPNTPAADWPD 371

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRS-----PW 434
           Q+ E VK ERL  +   +     + +    G+  +VL+E  + K+  +++GR+      +
Sbjct: 372 QLPEAVKVERLREINALVERVARARSARYAGRTEQVLVEGINPKDPEQVMGRTRTNRLTF 431

Query: 435 LQSVVLNSKNHNIGDIIKVRITDVKISTLYG 465
             +   +      GD+++VRI  V+  +L G
Sbjct: 432 FPAARTDGSRWQPGDLVEVRIEAVRSFSLSG 462


>gi|326574282|gb|EGE24230.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Moraxella
           catarrhalis 101P30B1]
          Length = 356

 Score =  276 bits (705), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 148/359 (41%), Positives = 216/359 (60%), Gaps = 23/359 (6%)

Query: 126 VVVGPQTYYRLPELLE--------------RARFGKRVVDTDYSVEDKFERLSIVDGGYN 171
           +V GPQT +RLPEL E              + R G  VVD  +   +KF+ L        
Sbjct: 1   MVFGPQTLHRLPELYESTTNQAKTDMGQIPKNRIG--VVDVSFPSIEKFDFLP-----EP 53

Query: 172 RKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQN 231
           R  G TAF++I EGC K+C+FCVVPYTRG E+SR L  V+ E   L + GV E+ LLGQN
Sbjct: 54  RVEGYTAFVSIMEGCSKYCSFCVVPYTRGEELSRPLDDVLAEIDSLAEQGVREVNLLGQN 113

Query: 232 VNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL 291
           VN +RG+  DG  C FS+LL+ +S I G+ R+RYTTSHP + +D +I+A+  +D L+ +L
Sbjct: 114 VNGYRGEKDDGSICRFSELLHYVSYIDGIERIRYTTSHPLEFTDDIIEAYQSIDKLVSHL 173

Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351
           HLP+QSGS+++L +M R HT   Y   I ++R +RPD+ +SSDFI+GFPGETD+DF  T+
Sbjct: 174 HLPIQSGSNQVLAAMKRNHTVDVYMNQIAKLRKIRPDLHLSSDFIIGFPGETDEDFLQTL 233

Query: 352 DLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVG 411
                + +  ++SF YS R GTP S++ + V    K +RL   Q+ ++        A VG
Sbjct: 234 QFAKDLDFDHSYSFIYSKRPGTPASDLPDDVSLETKKQRLAVFQELIKRSTFDKTQAMVG 293

Query: 412 QIIEVLIEKHG-KEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITD-VKISTLYGELV 468
           Q + VL E+   + +G L G +   +SV+  +    +G  + ++IT  + +  + GELV
Sbjct: 294 QTLRVLAEEPANRRQGYLHGTADNTRSVIFKADTDLLGKFVMIKITKAISMHLVEGELV 352


>gi|300784287|ref|YP_003764578.1| methylase of isopentenylated A37 derivatives in tRNA [Amycolatopsis
           mediterranei U32]
 gi|299793801|gb|ADJ44176.1| methylase of isopentenylated A37 derivatives in tRNA [Amycolatopsis
           mediterranei U32]
          Length = 497

 Score =  276 bits (705), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 154/419 (36%), Positives = 241/419 (57%), Gaps = 24/419 (5%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
            P+ + ++++GCQMNV+DS R+       GY    +    DLIV NTC +RE A  K+Y 
Sbjct: 6   APRAYQIRTFGCQMNVHDSERLAGQLEDAGYVPATAGAKPDLIVFNTCAVRENADNKLYG 65

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            LG +R  K +      DL + V GC+AQ +  EI++R+P V+VV G      LP LLER
Sbjct: 66  TLGHLRPDKVANP----DLQIAVGGCLAQKDRGEIVKRAPWVDVVFGTHNIGALPTLLER 121

Query: 143 ARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           AR      V+   S+E     L        R+    +++++  GC+  CTFC+VP  RG 
Sbjct: 122 ARHNAEAEVEILESLETFPSTLPA-----RRESSYASWVSVSVGCNNTCTFCIVPALRGK 176

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGL 260
           E  R   +++ E   L+  GV E+TLLGQNVN++   G++ G++  F  LL +   + GL
Sbjct: 177 ERDRRPGEILAEVEALVAEGVLEVTLLGQNVNSY---GVEFGDRLAFGKLLRACGTVDGL 233

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+T+ HP   +  +I A      +   LH+P+QSGSDR+L+ M R + +  +  I+D
Sbjct: 234 ERVRFTSPHPAAFTSDVIDAMAATPNVCHQLHMPLQSGSDRVLREMKRSYRSARFLNILD 293

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
            +R+  PD AI++D IVGFPGET++DF+AT+D+V +  ++ AF+F+YS R GTP + M  
Sbjct: 294 EVRAAMPDAAITTDIIVGFPGETEEDFQATLDVVAQARFSSAFTFQYSKRPGTPAATMDG 353

Query: 381 QVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIE----KHGKEKGKLVGRS 432
           Q+ + V   + ERL+ LQ  +  ++   N   VG+ +E+L+     +   E  ++ GR+
Sbjct: 354 QLPKEVVQERYERLVELQNAISWEE---NKKIVGRRVELLVAAGEGRKDAETHRMSGRA 409


>gi|183601356|ref|ZP_02962726.1| hypothetical protein BIFLAC_01822 [Bifidobacterium animalis subsp.
           lactis HN019]
 gi|183218962|gb|EDT89603.1| hypothetical protein BIFLAC_01822 [Bifidobacterium animalis subsp.
           lactis HN019]
          Length = 492

 Score =  276 bits (705), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 158/416 (37%), Positives = 243/416 (58%), Gaps = 25/416 (6%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNS----MDDADLIVLNTCHIREKAAEKVYS 82
           ++V + GCQMNV+DS R+  +    GY   +       D D++++NTC +RE A E++Y 
Sbjct: 38  YYVHTLGCQMNVHDSERIAGVMEENGYRPASEEQFLAHDVDVVIMNTCAVRENATERMYG 97

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +G+ +  K           + + GC+AQ + E I +R+P V+ V G +    LP LL++
Sbjct: 98  TIGKWKRFK----YRNPHAQIAIGGCMAQLDRERIAKRTPWVDAVFGTKNIEDLPALLDQ 153

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           AR  +    T   V +    L       +R    +A++ I  GC+  CTFC+VP TRG E
Sbjct: 154 ARAAQH---TQVKVNEDLT-LFPSQLPAHRASAHSAWVAISMGCNNTCTFCIVPTTRGKE 209

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
             R    V+ E R+ + NG  EITLLGQNVN++ G G+ G++  FS LL +  EI+GL R
Sbjct: 210 RDRRPGDVLAEIRETVTNGAKEITLLGQNVNSY-GYGI-GDRYAFSKLLRACGEIEGLER 267

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+T+ HP   +D +I A  +   +M  LH P+QSGSDRIL++M R + +  +  I+ +I
Sbjct: 268 VRFTSPHPAAFTDDVIAAMAETPNVMHQLHFPLQSGSDRILRAMRRSYRSERFLGILAKI 327

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R   PD  IS+D IVGFPGET++DF+ T+ +V++  ++ AF+F YSPR GTP + M EQV
Sbjct: 328 REAMPDAQISTDIIVGFPGETEEDFQQTLRVVEEARFSSAFTFIYSPRPGTPAAAM-EQV 386

Query: 383 DENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIE----KHGKEKGKLVGR 431
             +V   + ERLL +Q+++ E+ +   +  VG+ +EV+I     K   E  +  GR
Sbjct: 387 PYDVALDRLERLLAVQERITEEIL---EKFVGRDVEVMITGVTGKKDAETHRYTGR 439


>gi|219683412|ref|YP_002469795.1| (dimethylallyl)adenosine tRNA methylthiotransferase
           [Bifidobacterium animalis subsp. lactis AD011]
 gi|241191145|ref|YP_002968539.1| (dimethylallyl)adenosine tRNA methylthiotransferase
           [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|241196551|ref|YP_002970106.1| (dimethylallyl)adenosine tRNA methylthiotransferase
           [Bifidobacterium animalis subsp. lactis DSM 10140]
 gi|219621062|gb|ACL29219.1| RNA modification enzyme, MiaB family protein [Bifidobacterium
           animalis subsp. lactis AD011]
 gi|240249537|gb|ACS46477.1| hypothetical protein Balac_1121 [Bifidobacterium animalis subsp.
           lactis Bl-04]
 gi|240251105|gb|ACS48044.1| hypothetical protein Balat_1121 [Bifidobacterium animalis subsp.
           lactis DSM 10140]
 gi|295794134|gb|ADG33669.1| hypothetical protein BalV_1081 [Bifidobacterium animalis subsp.
           lactis V9]
          Length = 491

 Score =  276 bits (705), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 158/416 (37%), Positives = 243/416 (58%), Gaps = 25/416 (6%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNS----MDDADLIVLNTCHIREKAAEKVYS 82
           ++V + GCQMNV+DS R+  +    GY   +       D D++++NTC +RE A E++Y 
Sbjct: 37  YYVHTLGCQMNVHDSERIAGVMEENGYRPASEEQFLAHDVDVVIMNTCAVRENATERMYG 96

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +G+ +  K           + + GC+AQ + E I +R+P V+ V G +    LP LL++
Sbjct: 97  TIGKWKRFK----YRNPHAQIAIGGCMAQLDRERIAKRTPWVDAVFGTKNIEDLPALLDQ 152

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           AR  +    T   V +    L       +R    +A++ I  GC+  CTFC+VP TRG E
Sbjct: 153 ARAAQH---TQVKVNEDLT-LFPSQLPAHRASAHSAWVAISMGCNNTCTFCIVPTTRGKE 208

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
             R    V+ E R+ + NG  EITLLGQNVN++ G G+ G++  FS LL +  EI+GL R
Sbjct: 209 RDRRPGDVLAEIRETVTNGAKEITLLGQNVNSY-GYGI-GDRYAFSKLLRACGEIEGLER 266

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+T+ HP   +D +I A  +   +M  LH P+QSGSDRIL++M R + +  +  I+ +I
Sbjct: 267 VRFTSPHPAAFTDDVIAAMAETPNVMHQLHFPLQSGSDRILRAMRRSYRSERFLGILAKI 326

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R   PD  IS+D IVGFPGET++DF+ T+ +V++  ++ AF+F YSPR GTP + M EQV
Sbjct: 327 REAMPDAQISTDIIVGFPGETEEDFQQTLRVVEEARFSSAFTFIYSPRPGTPAAAM-EQV 385

Query: 383 DENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIE----KHGKEKGKLVGR 431
             +V   + ERLL +Q+++ E+ +   +  VG+ +EV+I     K   E  +  GR
Sbjct: 386 PYDVALDRLERLLAVQERITEEIL---EKFVGRDVEVMITGVTGKKDAETHRYTGR 438


>gi|260438409|ref|ZP_05792225.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Butyrivibrio crossotus
           DSM 2876]
 gi|292808995|gb|EFF68200.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Butyrivibrio crossotus
           DSM 2876]
          Length = 473

 Score =  276 bits (705), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 159/450 (35%), Positives = 259/450 (57%), Gaps = 24/450 (5%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           + ++++GCQMN  DS ++  +  + G+   ++ ++AD ++ NTC +RE A  ++Y  LGR
Sbjct: 40  YHIQTFGCQMNARDSEKLAGILEAAGFVHTDN-EEADFVIYNTCSVRENANNRLYGHLGR 98

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQA--EGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           ++ +K    K   D+L+ + GC+ Q   E E+I  +   +++V G    ++  EL+    
Sbjct: 99  MKVVK----KNNPDMLIAICGCMMQEPDEIEKIKTKYKFIDIVFGTHNIFKFAELVHTKL 154

Query: 145 FGKRVV-----DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
             + ++     DT+  VED    L  V     RK    + + I  GC+ FC++C+VPY R
Sbjct: 155 NSEGMIIDIWKDTNQIVED----LPDV-----RKYTFKSGVNIMYGCNNFCSYCIVPYVR 205

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G E SR    ++ E  + +  GV E+ LLGQNVN++ GK L+    +F++LL  +S+++G
Sbjct: 206 GRERSREPKDIIREVERFVKEGVKEVMLLGQNVNSY-GKTLEN-PISFAELLKEVSKVEG 263

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           L R+R+ T HP+D+SD LI+       +  ++HLP+QSGS RILK MNR +T   Y +++
Sbjct: 264 LERIRFMTPHPKDLSDELIETMAVTPKVCHHIHLPLQSGSSRILKLMNRHYTKESYLELV 323

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            +IR   PD A+++D IVGFPGET++DF  TMD+V +  +  A++F YS R GTP ++M 
Sbjct: 324 KKIRKRMPDAALTTDIIVGFPGETEEDFNDTMDVVREAEFDSAYTFIYSKREGTPAASMT 383

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSV 438
           EQ+ E V  ER   L K++ E         VG+ ++VL+E+ +   +G L GR      V
Sbjct: 384 EQIPEEVTKERFDRLLKQVGESSKKRCGLDVGKTLKVLVEEVNQNHEGLLTGRLENNTLV 443

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468
                +  +G I  V++ + K     GELV
Sbjct: 444 HFKGNSSLVGTICDVKLNESKGFYYIGELV 473


>gi|153853169|ref|ZP_01994578.1| hypothetical protein DORLON_00563 [Dorea longicatena DSM 13814]
 gi|149753955|gb|EDM63886.1| hypothetical protein DORLON_00563 [Dorea longicatena DSM 13814]
          Length = 481

 Score =  276 bits (705), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 168/448 (37%), Positives = 253/448 (56%), Gaps = 14/448 (3%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P  F V ++GCQMN  DS ++  +    GY    + D+AD I+ NTC +RE A  +VY  
Sbjct: 44  PLTFCVTTFGCQMNARDSEKLCGILEKIGYVEA-AEDEADFIIFNTCTVRENANMRVYGR 102

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQ-AEGEEILRRS-PIVNVVVGPQTYYRLPELLE 141
           LG+++     R K+   +++ + GC+ Q  E  E L+ S   V+++ G    ++  EL+ 
Sbjct: 103 LGQLK----PRKKKNPHMMIGLCGCMMQEPEVVEKLKTSYRYVDIIFGTHNIFKFAELIV 158

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
                +R+V   +   DK       D  ++ K GV     I  GC+ FC++C+VPY RG 
Sbjct: 159 TRFESQRMVIDIWKDTDKIVENLPNDRKFSFKSGVN----IMFGCNNFCSYCIVPYVRGR 214

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR    ++ E R+L+ +GV E+ LLGQNVN++ GK L+    TF+ LL  + +I+GL 
Sbjct: 215 ERSRDPEAIISEIRQLVADGVVEVMLLGQNVNSY-GKNLE-HPITFAQLLERIEQIEGLE 272

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+ TSHP+D+SD LI+  G    +  +LHLPVQSGS +ILK MNR +T  +Y +++++
Sbjct: 273 RIRFMTSHPKDLSDELIEVMGKSKKICKHLHLPVQSGSSKILKKMNRHYTKEQYLELVEK 332

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           IR   PD+++++D IVGFPGET++DF  TMD+V K+ Y  AF+F YS R GTP + M +Q
Sbjct: 333 IRRSVPDVSLTTDIIVGFPGETEEDFEETMDIVRKVRYDSAFTFIYSKRTGTPAAVMEDQ 392

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GRSPWLQSVVL 440
           V E+V   R   L K++            G +   LIE   +    +V GR      V +
Sbjct: 393 VPEDVVKNRFDRLLKEVHSIASEVCSVHEGTVQTALIESVSEHDPSMVTGRLSNNLLVHI 452

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 IG +  VR+T+ K     GEL 
Sbjct: 453 KGDKGMIGRLADVRLTECKGFYYLGELA 480


>gi|227495825|ref|ZP_03926136.1| possible tRNA 2-methylthioadenine synthetase [Actinomyces
           urogenitalis DSM 15434]
 gi|226834647|gb|EEH67030.1| possible tRNA 2-methylthioadenine synthetase [Actinomyces
           urogenitalis DSM 15434]
          Length = 588

 Score =  276 bits (705), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 151/410 (36%), Positives = 244/410 (59%), Gaps = 27/410 (6%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD------------DADLIVLNTC 70
           +P+ + V++ GCQMNV+DS  M  +  + GY RV  +              AD++++NTC
Sbjct: 32  LPRTYHVRTLGCQMNVHDSEHMAGLLEAAGYRRVEEVPAAAARATEAGDGGADVVIINTC 91

Query: 71  HIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGP 130
            +RE AA +++  LG++  +K  R      + + VAGC+AQ  GE I+ ++P V+VV G 
Sbjct: 92  SVRENAATRLFGNLGQLAAVKRERP----GMQIAVAGCLAQQMGEGIVEKAPWVDVVFGT 147

Query: 131 QTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKR--GVTAFLTIQEGCDK 188
                LP LLERAR      + + +VE + E L +       +R     A+++I  GC+ 
Sbjct: 148 HNLDVLPALLERARH-----NAEAAVELE-ESLKVFPSTLPTRRESAYAAWVSIAVGCNN 201

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS 248
            CTFC+VP  RG +  R   +V+ E   +   GV E+TLLGQNVN++ G G  G++  F+
Sbjct: 202 TCTFCIVPSLRGKQRDRRPGEVLAEIEAVAAQGVTEVTLLGQNVNSY-GVGF-GDRGAFA 259

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
            LL +   ++G+ R+R+T+ HP   +  +I A  +   +MP LH+P+QSGSD++L++M R
Sbjct: 260 KLLRAAGGVEGIERVRFTSPHPAAFTSDVIDAMAETPQVMPSLHMPLQSGSDKVLRAMRR 319

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
            + +  + +I+D +R   P+ AI++D IVGFPGET++DF+AT+++V+K  +A AF+F+YS
Sbjct: 320 SYRSERFLRILDEVREKIPNAAITTDLIVGFPGETEEDFQATLEVVEKARFASAFTFEYS 379

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI 418
           PR GTP ++ L QV   V  +R   L + +R      N    G ++E+L+
Sbjct: 380 PRPGTPAAD-LPQVPVEVVKDRYKRLDELVRRITHEENVRQEGSVVELLV 428


>gi|124026430|ref|YP_001015545.1| 2-methylthioadenine synthetase [Prochlorococcus marinus str.
           NATL1A]
 gi|229890598|sp|A2C471|MIAB_PROM1 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|123961498|gb|ABM76281.1| 2-methylthioadenine synthetase [Prochlorococcus marinus str.
           NATL1A]
          Length = 463

 Score =  276 bits (705), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 164/454 (36%), Positives = 257/454 (56%), Gaps = 23/454 (5%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           +++ ++GCQMN  DS RM  +    GY        ADL++ NTC IR+ A +KVYS+LGR
Sbjct: 21  YWITTFGCQMNKADSERMSGILEYMGYYPAEEELKADLVLYNTCTIRDSAEQKVYSYLGR 80

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
               +  R +   +L +VVAGC+AQ EGE +LRR P +++++GPQ   RL  LL +   G
Sbjct: 81  ----QAIRKRSLPNLKIVVAGCLAQQEGESLLRRVPEIDLLMGPQHCNRLESLLNQVDSG 136

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           ++V+ T    E++F    I      R      ++ I  GC++ CT+CVVP  RG E SR+
Sbjct: 137 QQVLAT----EEQFILEDITTP--RRDSSFCGWVNIIYGCNERCTYCVVPSVRGKEQSRT 190

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE------KCTFSDLLYSLSEIKGL 260
              +  E   L  +G  EITLLGQN++A+ G+    +      + T S LL  + +I+G+
Sbjct: 191 PEAIKSEVEDLAKSGYKEITLLGQNIDAY-GRDFQSQNKEASAQITLSYLLKYIHDIEGI 249

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+ TSHPR  +  LI    +L  +  + H+P QSGS++ILK+M R +T   Y+ II+
Sbjct: 250 ERIRFATSHPRYFTKELIDTCSELPKVCEHFHIPFQSGSNKILKNMGRGYTIESYKNIIN 309

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
            I+S  P  AIS D IV FPGE++ D+  T+ L+D+I +    +  YSPR  TP +    
Sbjct: 310 YIKSKIPKAAISGDAIVAFPGESETDYEQTLSLIDEIKFDHVNTAAYSPRPNTPAATWPR 369

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRS-----PW 434
           Q++E++K +RL  +   +       N        E+LIE  + K+  +L+GR+      +
Sbjct: 370 QLNEDIKVKRLREINSLVENIAKERNQRYKNTSQEILIENINPKDSFQLMGRTRTNRLTF 429

Query: 435 LQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
               + N   + +G++IKV+ITDV+  +L  +L+
Sbjct: 430 FPRSLENGVENKLGELIKVKITDVRPFSLTAKLL 463


>gi|328950938|ref|YP_004368273.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Marinithermus hydrothermalis DSM 14884]
 gi|328451262|gb|AEB12163.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Marinithermus hydrothermalis DSM 14884]
          Length = 445

 Score =  275 bits (704), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 168/454 (37%), Positives = 259/454 (57%), Gaps = 39/454 (8%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R  + ++GCQMN YD+  ++    S G E V+++ DA+ +++NTC +R K  EKV S LG
Sbjct: 7   RAHLITFGCQMNEYDTHLVQSELASLGAEFVDTIQDANFVLVNTCAVRGKPVEKVKSLLG 66

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQ-AEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           ++R  K  R      LLV + GCVAQ  EG+EI ++   V++++GP    ++ + LE   
Sbjct: 67  KLRKEKERR-----PLLVGMMGCVAQLEEGQEIAKKFD-VDILLGPGAITQIAKALES-- 118

Query: 145 FGKRVVDTDYSVEDKFERLSIVDG-----GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
                        DKF  L+  D          K  ++AF++I  GC+  CT+C+VP TR
Sbjct: 119 ------------HDKFWDLTFRDEVNTYVPPPPKGTLSAFVSIIRGCNHHCTYCIVPKTR 166

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G E+SR    +++E  +L   GV E+TLLGQNVN++ GK   G   +F++LL  + +I G
Sbjct: 167 GPEVSRHPDLILEEIERLKAAGVLEVTLLGQNVNSY-GKDQPGYP-SFAELLRMVGQI-G 223

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ-- 317
           + R+++TTSHP + +D +I+A  +   +  Y+HLPVQSGS+R+L+ M R     EYR+  
Sbjct: 224 IPRIKFTTSHPVNFTDDIIQAIAETPQVCRYIHLPVQSGSNRVLRRMGR-----EYRREW 278

Query: 318 IIDRIRSVR---PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
            +DR+R+++   PD+ +S+D IVGFPGET+ DF  T+ L D++GY  A+ F YSPR GTP
Sbjct: 279 YLDRVRAIKEALPDVVLSTDIIVGFPGETEADFEETLTLYDEVGYDHAYMFIYSPRPGTP 338

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPW 434
            +   + +   VK  RL  L +K +E     N    G+++EVL+    KE G   G    
Sbjct: 339 SARHFQDLPREVKVARLQRLIEKQKEWSYRKNKRWEGRVVEVLVRGTAKEDGYAEGHDRG 398

Query: 435 LQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
              V++ +       + +V I       LYGE+V
Sbjct: 399 NHPVLVPAAQAPEPGLYQVEIKQATPHLLYGEVV 432


>gi|325285677|ref|YP_004261467.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Cellulophaga lytica DSM 7489]
 gi|324321131|gb|ADY28596.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Cellulophaga lytica DSM 7489]
          Length = 480

 Score =  275 bits (704), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 166/466 (35%), Positives = 262/466 (56%), Gaps = 35/466 (7%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ +++SYGC MN  DS  +  +   +G+     ++DADL+++NTC IREKA   +   L
Sbjct: 26  RKLYIESYGCAMNFSDSEIVASILSEEGFNTTKVLEDADLVLVNTCSIREKAELTIRKRL 85

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            +   +K ++      L V V GC+A+    + L    IV++VVGP  Y  LP L++   
Sbjct: 86  EKFNAVKRTK----PHLKVGVLGCMAERLKSQFLEEEKIVDMVVGPDAYKDLPNLIKEVD 141

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G+  ++   S E+ +  ++ V    N   G++A+++I  GCD  CTFCVVP+TRG E S
Sbjct: 142 EGRNAINVILSKEETYGDVAPVRLNTN---GISAYVSITRGCDNMCTFCVVPFTRGRERS 198

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNA--WRGKGL--------DGEKCT---FSDLL 251
           R    +++E   L + G  EITLLGQNV++  W G GL        + +K T   F++LL
Sbjct: 199 REPQSILEEVNDLWNRGYKEITLLGQNVDSYLWYGGGLKKDFNQATEMQKATAVNFANLL 258

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
              +  +  +R+R++TS+P+D++  ++K     D +  ++HLPVQSGSDRILK+MNR HT
Sbjct: 259 EMTAIAQPKMRIRFSTSNPQDLTLDVVKTMAKYDNICKHIHLPVQSGSDRILKAMNRLHT 318

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
             EY  +ID IR + PD AIS D I GFP ET++D + T+ L++ + Y   + + YS R 
Sbjct: 319 REEYFTLIDNIRQIIPDCAISQDMIAGFPTETEEDHKDTLSLLEYVKYDFGYMYSYSERP 378

Query: 372 GTPGSNMLE----QVDENVKAERLLCLQKK---LREQQVSFNDACVGQIIEVLIEKHGKE 424
           GT  +  LE    + D+  +   ++ LQ++    R QQ       +G+I EVLIE   K 
Sbjct: 379 GTMAARKLEDDVPEADKKRRLAEIIALQRQHSGYRLQQR------LGKIDEVLIEGESKR 432

Query: 425 KGK-LVGRSPWLQSVVL-NSKNHNIGDIIKVRITDVKISTLYGELV 468
             +  +GR+     VV    +   +G+ ++V+I D    TL G +V
Sbjct: 433 STEHWMGRNSQNAVVVFPKEEGSQVGEFVQVKIEDCTTGTLLGSIV 478


>gi|313205436|ref|YP_004044093.1| tRNA-i(6)a37 thiotransferase enzyme miab [Paludibacter
           propionicigenes WB4]
 gi|312444752|gb|ADQ81108.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Paludibacter
           propionicigenes WB4]
          Length = 456

 Score =  275 bits (704), Expect = 9e-72,   Method: Compositional matrix adjust.
 Identities = 162/454 (35%), Positives = 256/454 (56%), Gaps = 28/454 (6%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F+++YGCQMNV DS  +  +    G+   + + +AD I +NTC IR+ A ++V + L
Sbjct: 20  KKLFIETYGCQMNVADSEVVASIMQMDGFALTDKITEADAIFVNTCSIRDNAEQRVINRL 79

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
                LK    ++   L+V V GC+A+   +E++     VN+VVGP  Y  +P L+    
Sbjct: 80  KYFETLK----RKNKKLIVGVVGCMAERVKDELINEYG-VNIVVGPDAYMDIPNLIGSVE 134

Query: 145 FGKRVVDTDYSVEDKFE-----RLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
            G + ++ D S  + +      R+S         + ++ F++I  GC+ FC++C+VPYTR
Sbjct: 135 QGNKAINVDLSTTETYSDVLPTRIS---------KSISGFISIMRGCNNFCSYCIVPYTR 185

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G E SR +  ++ E + L      E+TLLGQNVN++R +  DGE   F DLL  ++E   
Sbjct: 186 GRERSRDVESILTELKDLQAKNYKEVTLLGQNVNSYRMEK-DGEVIEFPDLLAIVAEAAP 244

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
            +R R++TSHP+DMSD  ++       L   +HLPVQSGS++ILK MNR++T   Y + I
Sbjct: 245 EMRFRFSTSHPKDMSDRTLEVIAQYPNLCKSIHLPVQSGSNKILKLMNRKYTREWYLERI 304

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT-PGSNM 378
             IR + P+ +IS+D   GF GET++D + T+ L+ ++ +  AF FKYS R GT    N+
Sbjct: 305 AAIRRILPEASISTDVFCGFHGETEEDHQETLSLLREVNFDLAFMFKYSERPGTFAAKNL 364

Query: 379 LEQVDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPW 434
            + + E  K  RL   + LQ++L  Q    N   VG+  EVL+E   K  K +L GR+  
Sbjct: 365 PDNISEEEKLRRLAEIIDLQRELTNQG---NQRDVGKTFEVLVEGFSKRSKEQLFGRTSQ 421

Query: 435 LQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            + V+       IG+ I+VR+     ++L  E+V
Sbjct: 422 NKVVIFPRLGRRIGETIQVRVLSASSASLIAEVV 455


>gi|154509070|ref|ZP_02044712.1| hypothetical protein ACTODO_01587 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798704|gb|EDN81124.1| hypothetical protein ACTODO_01587 [Actinomyces odontolyticus ATCC
           17982]
          Length = 512

 Score =  275 bits (704), Expect = 9e-72,   Method: Compositional matrix adjust.
 Identities = 160/471 (33%), Positives = 266/471 (56%), Gaps = 41/471 (8%)

Query: 13  MVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDA---------- 62
           M +   D   +P+ + V++ GCQMN +DS RM  +    G   V  + +A          
Sbjct: 1   MNTMTQDGTTLPRTYAVRTLGCQMNEHDSERMAGLLEQAGLVPVEQVPEAAARATDAGDM 60

Query: 63  --DLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRR 120
             D+IV+NTC +RE AA +++  LG++ ++K +R      + + V GC+AQ   + I+ +
Sbjct: 61  GADVIVINTCSVRENAATRLFGNLGQLASVKRARPG----MQIAVGGCLAQQMRDGIVEK 116

Query: 121 SPIVNVVVGPQTYYRLPELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAF 179
           +P V+ V G      LP LL RA   +   V+ + S++     L       +R+    A+
Sbjct: 117 APWVDAVFGTHNIDVLPALLRRAEHNRAAAVEIEESLKVFPSTLPT-----HRESAYAAW 171

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
           ++I  GC+  CTFC+VP+ RG E  R    ++ E   +   G  E+TLLGQNVN++ G G
Sbjct: 172 VSISVGCNNTCTFCIVPHLRGKERDRRPGDILAEVEAVASQGAIEVTLLGQNVNSY-GVG 230

Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
             GE+  F+DLL ++  ++G+ R+R+T+ HP   +D +I A      +MP LH+P+QSGS
Sbjct: 231 F-GERGAFADLLRAVGRVEGIERVRFTSPHPAAFTDDVIAAMAQTPTVMPSLHMPLQSGS 289

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
           D IL+ M R +    +  I++R+R+  P+ AI++D IVGFPGET++DF+AT+++V++  +
Sbjct: 290 DAILRQMRRSYRRERFMGILERVRAAIPEAAITTDIIVGFPGETEEDFQATLEVVEQARF 349

Query: 360 AQAFSFKYSPRLGTPGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEV 416
           + AF+F YSPR GTP ++  +QV ++V  E   RL+ LQ+++  +    N A  G  +EV
Sbjct: 350 SSAFTFLYSPRPGTPAADREDQVPDDVALERYQRLIKLQERICAED---NAALAGTEVEV 406

Query: 417 LI-EKHGKEKG---KLVGRSP-------WLQSVVLNSKNHNIGDIIKVRIT 456
           L+ E  G++ G   ++ GR+         L   +  +     GD+I+  +T
Sbjct: 407 LVSEGDGRKDGATHRISGRARDNRLVHVALPEGMAEADRPRPGDMIRATVT 457


>gi|325289891|ref|YP_004266072.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Syntrophobotulus
           glycolicus DSM 8271]
 gi|324965292|gb|ADY56071.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Syntrophobotulus
           glycolicus DSM 8271]
          Length = 442

 Score =  275 bits (704), Expect = 9e-72,   Method: Compositional matrix adjust.
 Identities = 158/448 (35%), Positives = 252/448 (56%), Gaps = 15/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +++   SYGCQM+  D+     +   QGYE+   ++ ADLI++NTC +RE A  K+   +
Sbjct: 6   KKYLTLSYGCQMSERDAETFSSVARQQGYEKTTELEQADLIIINTCCVRESAENKIIGKI 65

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G+++N K  +      L + V GC+ Q  G  E++ +R+  V++  G        +LL+ 
Sbjct: 66  GQLKNYKEKK----PSLKIAVCGCMVQQPGTAEKLSKRAAHVDIWTGTNDIGNFAQLLKS 121

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           A    +++      +   +R  I    Y +   + A + I  GC+ +C +C+VP+ RG E
Sbjct: 122 ASENSKIICVSQEAQKNGDR-EISTAEYGK---LKANVNIMYGCNNYCAYCIVPFVRGEE 177

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL-DGEKCTFSDLLYSLSEIKGLV 261
            SR    + +E   L+  G  E+TLLGQNVN++   GL DG    FS+LL  + ++  L 
Sbjct: 178 RSRPKEDICEEIGVLVQGGCKEVTLLGQNVNSY---GLRDGFAYDFSNLLQEVDQLPNLD 234

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+ TSHP+D+SD LIK   +   +  ++HLP Q+GS+ IL++MNR +T   Y + I  
Sbjct: 235 RIRFITSHPKDLSDLLIKTIAEGQKICEHIHLPFQAGSNTILRAMNRNYTREYYLERIKA 294

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I  + P++ +++D IVGFPGET++DF  T+DLV K+ ++QAF+F YS R GT  ++  EQ
Sbjct: 295 ILGMIPEVRLTTDIIVGFPGETEEDFEQTIDLVQKVHFSQAFTFMYSKRSGTAAASYEEQ 354

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440
           +  +VK  RL  L      + +S+ +   G+  EVL+E   K   + L GR+   + VV 
Sbjct: 355 IPLDVKKRRLQRLMSIQNARSLSWREQMTGKEYEVLVEGPSKNNPEMLTGRTRGNEVVVF 414

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                  G ++ VRI  V   TL+GELV
Sbjct: 415 PGHLDLAGTLVLVRIQSVNSWTLWGELV 442


>gi|206900889|ref|YP_002250798.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Dictyoglomus thermophilum
           H-6-12]
 gi|229890516|sp|B5YE40|MIAB_DICT6 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|206739992|gb|ACI19050.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Dictyoglomus thermophilum
           H-6-12]
          Length = 440

 Score =  275 bits (704), Expect = 9e-72,   Method: Compositional matrix adjust.
 Identities = 164/456 (35%), Positives = 257/456 (56%), Gaps = 36/456 (7%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           ++++ +YGCQMN  DS ++  +  + GY     M++AD+I+LNTC +RE+A EKV+  LG
Sbjct: 3   KYYIITYGCQMNKSDSEKVAGILENLGYTPSEKMEEADIILLNTCSVRERAEEKVFGKLG 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +R LK    K   +LL+ + GC+AQ   EE++ + P V+ V+G   +  LP++LE    
Sbjct: 63  ELRKLK----KRNQNLLIGIFGCMAQRMKEELIEKFPHVDFVLGSYKFTELPKILESLDG 118

Query: 146 GKRVV---------DTDYSV---EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC 193
            K+VV         D D+ V   E+KF+                A++ I  GC+ FCT+C
Sbjct: 119 KKKVVLAEDIPSPQDVDFRVIKRENKFQ----------------AWIPIIYGCNNFCTYC 162

Query: 194 VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS 253
           +VPY RG E SR   +++ E   L   GV E+TLLGQNV+++   G D      +DLL  
Sbjct: 163 IVPYLRGREKSRDPEEIIREVEYLASQGVVEVTLLGQNVDSY---GKDLGNVDLADLLVE 219

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
           +  I  + R+R+ TSHPRD+SD LI+       + P+ HLP+Q+GSDRIL+ M R +T  
Sbjct: 220 IHRIPRIKRIRFLTSHPRDVSDKLIRVVATHPKVCPHWHLPLQAGSDRILRRMGRGYTYS 279

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
           EY+ +I++IR+  P  + S+D IVGFPGE ++DF AT   +++I +       YS R GT
Sbjct: 280 EYKALIEKIRAEIPKASFSTDIIVGFPGEEEEDFLATRRALEEIKFDTVNLAIYSKRPGT 339

Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRS 432
           P +N  + +    K      L+   R+     N + VG+   VL E+ + K   +L GR+
Sbjct: 340 PAANYEDLIPYETKKRWFDELENLQRKIIYEKNLSRVGKEEIVLAEEVNPKNPRELSGRT 399

Query: 433 PWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
              + V   ++   IG  + V+IT+ ++ +L GE++
Sbjct: 400 ENYRLVFFEAEKELIGKFLLVKITEARLWSLKGEVI 435


>gi|331084033|ref|ZP_08333140.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Lachnospiraceae bacterium 6_1_63FAA]
 gi|330402395|gb|EGG81965.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Lachnospiraceae bacterium 6_1_63FAA]
          Length = 491

 Score =  275 bits (704), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 162/439 (36%), Positives = 256/439 (58%), Gaps = 24/439 (5%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           + ++GCQMN  DS ++  +    GY  V   ++AD ++ NTC +RE A  +VY  LG + 
Sbjct: 59  ITTFGCQMNARDSEKLVGILERIGYVEVPD-ENADFVIYNTCTVRENANLRVYGRLGYLH 117

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           +LK    K+   +++ + GC+ Q     E++ +    VN++ G    Y+  EL+  +   
Sbjct: 118 SLK----KKNPHMMIGLCGCMMQEPQVVEKLKKSYSFVNLIFGTHNIYKFAELVVSSLLS 173

Query: 147 KRVV-----DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
            R++     DTD  VED       V+  Y  K GV     I  GC+ FC++C+VPY RG 
Sbjct: 174 DRMIIDIWKDTDKIVED-----LPVERKYPFKSGVN----IMFGCNNFCSYCIVPYVRGR 224

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR+   +V E  +L+ +GV E+ LLGQNVN++ GK LD E  TF+ LL  + +I+GL 
Sbjct: 225 ERSRNPKDIVREIERLVKDGVVEVMLLGQNVNSY-GKNLD-EPMTFAQLLTEIEKIEGLK 282

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+ TSHP+D+SD LI+   +   +  +LHLP+QSGS  IL+ MNRR+   +Y  ++++
Sbjct: 283 RIRFMTSHPKDLSDELIEVMKNSKKICKHLHLPLQSGSSDILQKMNRRYDKEKYLNLVEK 342

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           IR+  PDI++++D IVGFPGET++DF  T+D+V K+ Y  AF+F YS R GTP + M  Q
Sbjct: 343 IRTAIPDISLTTDIIVGFPGETEEDFLETVDVVKKVRYDSAFTFIYSKRTGTPAAVMENQ 402

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKGKLVGRSPWLQSVVL 440
           V E V  +R   L + ++      +    G+++EVL+ E++ ++K  + GR      V  
Sbjct: 403 VSEGVVKDRFNRLLETVQSIGREMSARDTGKVMEVLVEEQNSQDKHLMTGRLSNNLLVHF 462

Query: 441 NSKNHNIGDIIKVRITDVK 459
                 IG + +VR+ + +
Sbjct: 463 EGDTSLIGQLCQVRLDECR 481


>gi|296121908|ref|YP_003629686.1| RNA modification enzyme, MiaB family [Planctomyces limnophilus DSM
           3776]
 gi|296014248|gb|ADG67487.1| RNA modification enzyme, MiaB family [Planctomyces limnophilus DSM
           3776]
          Length = 501

 Score =  275 bits (704), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 165/466 (35%), Positives = 257/466 (55%), Gaps = 30/466 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + ++++ GCQMN+ DS  +      +GYE  +  DDAD I+ NTC +RE A  K+YS LG
Sbjct: 29  KLYIETVGCQMNMLDSELVVAALRREGYELTSQPDDADTILFNTCSVREHAEHKIYSALG 88

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R+++ +  R ++    ++ V GC+AQ +   I  R+P V++VVG      +P L++ AR 
Sbjct: 89  RLKHARKQRPQQ----VIGVMGCMAQKDQSLIFDRAPHVDIVVGTGQMAEIPGLIKNARK 144

Query: 146 GK---------RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
            +         R   T   V   F+    +     R     AF+ I  GCDKFCT+CVVP
Sbjct: 145 DRERALAVSLDRKAGTRREVSASFQSYDPLREPEMRPSPYQAFVRIMFGCDKFCTYCVVP 204

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256
            TRG E SR  S+++ E   L   GV E+TLLGQ VN+++    +G+    SDLL ++ E
Sbjct: 205 MTRGPEQSRLPSEILAEVAHLAGQGVKEVTLLGQTVNSYKCVE-NGKTWRLSDLLAAMHE 263

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
             G++R ++ TS+PRDM+D L+ A  DL     Y+H+P+Q G D +L  M R +T   YR
Sbjct: 264 TPGMLRFKFVTSYPRDMTDDLLIALRDLPKCSHYIHVPLQHGCDDVLTRMKRGYTTAHYR 323

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
           ++  RI+   P  A+SSDFIVGF GET++  + +++ + +  +  +F FKYS R GT   
Sbjct: 324 EMHQRIKEYLPYSAVSSDFIVGFCGETEESHQKSLEAIREYRFKNSFIFKYSERPGTKAQ 383

Query: 377 NMLE-QVDENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-------- 424
           ++ +  + + VK  R   LL LQ ++ E+    N A +G+ +EVL+E   K         
Sbjct: 384 SLFQDDIPDEVKKRRNQELLELQNEISEED---NAAFIGREVEVLVEGPSKNAIKKADSS 440

Query: 425 -KGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
            K +L GR+   + VV +      G + +V + DV  +TL G ++ 
Sbjct: 441 LKEQLTGRTRCDRIVVFDGNPRLAGSLAQVVVHDVTPTTLVGSILT 486


>gi|288572815|ref|ZP_06391172.1| RNA modification enzyme, MiaB family [Dethiosulfovibrio
           peptidovorans DSM 11002]
 gi|288568556|gb|EFC90113.1| RNA modification enzyme, MiaB family [Dethiosulfovibrio
           peptidovorans DSM 11002]
          Length = 442

 Score =  275 bits (703), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 159/445 (35%), Positives = 257/445 (57%), Gaps = 17/445 (3%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           F +K YGCQMNVYD  ++      +G+  V   D AD++V   C IR+KA  K++S +GR
Sbjct: 4   FCIKVYGCQMNVYDGDKIRTAMILKGWREVPETD-ADVVVYVGCSIRDKAEHKIWSEMGR 62

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
            R     +       +V + GC+AQ  G ++++R P + ++ GP++   +P+ L RA  G
Sbjct: 63  YRPGWEGKKSP----IVCLVGCMAQNVGRDMMKRFPWIRMIAGPRSIGFIPDGLIRAVSG 118

Query: 147 KRV--VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
           +RV  +D D     +F  L +V     R     A++TI  GCD FCT+C+VPY RG  +S
Sbjct: 119 ERVDLLDADAR---EFNDLDVVP--IKRDNPWKAYVTIAHGCDYFCTYCIVPYVRGRFMS 173

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC-TFSDLLYSLSEIKGLVRL 263
           R   ++++E R L+D+GV EI+LLGQNV+ +   G D ++   F+DLL  ++E  G+  +
Sbjct: 174 RDSEEILEEIRALVDDGVREISLLGQNVDTY---GADFDRSYRFADLLRDVAETDGVDLV 230

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+ TS+P+D++  ++    +   + P ++LP+QSGSDRILKSMNR ++  EY + +  IR
Sbjct: 231 RFMTSYPKDLTADVVSVMAEYPKICPGINLPIQSGSDRILKSMNRHYSIAEYTETVRIIR 290

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              P++ ++SD IVGFPGET++DF A+M+ V +  +    +  YSPR GTP + M +Q+ 
Sbjct: 291 EGLPEVGLTSDLIVGFPGETEEDFMASMEAVRQFRFDLVHTAAYSPRAGTPAAKMEDQLP 350

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GRSPWLQSVVLNS 442
           +  K  RL  + +      +  N+A VG+   +LI+    +   LV GR+   + V+   
Sbjct: 351 DEEKFRRLSEINRLQSSIAMEINEATVGRRYRILIDGPAPKGDGLVQGRTMTDKVVICPG 410

Query: 443 KNHNIGDIIKVRITDVKISTLYGEL 467
           +    G    V+I   +   L+GE+
Sbjct: 411 EASWAGRFADVKIVRAENWCLHGEI 435


>gi|119358129|ref|YP_912773.1| RNA modification protein [Chlorobium phaeobacteroides DSM 266]
 gi|229890478|sp|A1BIX2|MIAB_CHLPD RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|119355478|gb|ABL66349.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Chlorobium
           phaeobacteroides DSM 266]
          Length = 442

 Score =  275 bits (703), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 160/448 (35%), Positives = 249/448 (55%), Gaps = 23/448 (5%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++F++ ++GCQMN  DS  +  +   +GY++  S ++A +I+LNTC +RE A E++  +L
Sbjct: 6   RKFYIHTFGCQMNQADSGIITALLEKEGYQQAASEEEAGIIMLNTCAVRENAVERISHYL 65

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             ++  K    ++  +L+V + GC+ Q   EE+    P+++ + GP TY  LP L+  A 
Sbjct: 66  QHVKGFK----RKCPELIVGLTGCIPQYRREELFTVFPVIDFLAGPDTYRVLPALIAEAG 121

Query: 145 FGKRVVDTDYSVEDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             +       S   +F      DG    R + + AF+ I  GC+  C FCVVP+TRG E 
Sbjct: 122 DSR-------SARLEFNAFETYDGVRQARTQSLNAFVPIIRGCNNMCAFCVVPFTRGRER 174

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           S     V+DE R L D+G  EITLLGQNVN++       +   FS LL ++S      R+
Sbjct: 175 SHPFESVLDEVRALADDGCREITLLGQNVNSYHDPASGAD---FSRLLDAVSREAPETRI 231

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+TTSHP+DMS  L++       +  +LHLPVQSGS R+L  MNR H   EYR  I+ +R
Sbjct: 232 RFTTSHPKDMSHSLVETMALRPNICNHLHLPVQSGSTRMLARMNRGHDIEEYRNKIELLR 291

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT-PGSNMLEQV 382
              P I++S+D I GF GE++ D   T++L+ ++ +   F F YS R GT     M + V
Sbjct: 292 KWIPGISLSTDLIAGFCGESEADHDQTLELMREVRFDSVFMFYYSVRQGTLAARTMPDDV 351

Query: 383 DENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLVGRSPWLQSV 438
            E VK +RL   + LQ  +  + +       G ++EVL+E   +    +L+GR+   + V
Sbjct: 352 PEEVKKQRLQEIIDLQNGISAELLGL---APGSVVEVLVESESRRSSDQLMGRTDGNRVV 408

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGE 466
           V +   H  GD+++V IT    +TL+G+
Sbjct: 409 VFDRGIHQPGDLVRVMITGSTSATLFGQ 436


>gi|313837164|gb|EFS74878.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes
           HL037PA2]
 gi|314927814|gb|EFS91645.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes
           HL044PA1]
 gi|314971937|gb|EFT16035.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes
           HL037PA3]
          Length = 490

 Score =  275 bits (703), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 164/443 (37%), Positives = 256/443 (57%), Gaps = 25/443 (5%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGY---ERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           + V +YGCQMNV+DS R+  +    GY    R +++  AD++V NTC +RE A  ++Y  
Sbjct: 14  YRVVTYGCQMNVHDSERIAGLLEEAGYVPDPRTDTLAPADVVVFNTCAVRENADNRLYGT 73

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LG + ++K++       + + V GC+AQ + + ++ R+P V+VV G      LP LL+RA
Sbjct: 74  LGHMASVKSA----NPGMQLAVGGCMAQKDKDAVVARAPWVDVVFGTHNVGSLPALLKRA 129

Query: 144 RFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           R      V+ + S+      L        R    +A+++I  GC+  CTFC+VP  RG E
Sbjct: 130 RHNATAQVEIEESLITFPSNLPT-----RRDSAYSAWVSISVGCNNTCTFCIVPQLRGRE 184

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLV 261
             R   +++ E R L+D GV E+TLLGQNVN++   G+  G++  F+ LL +   I GL 
Sbjct: 185 TDRRPGEILSEIRALVDEGVQEVTLLGQNVNSY---GVQFGDRGAFAKLLRACGNIDGLE 241

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+T+ HP   +D +I+A  +   +MP LH+P+QSGSD +L+ M R + + ++  I+DR
Sbjct: 242 RVRFTSPHPAAFTDDVIEAMAETPNVMPSLHMPLQSGSDEVLRRMRRSYRSTKFLGILDR 301

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R   PD AI++D IVGFPGETD DF  TM +V +  ++ AF+F+YS R  TP   M +Q
Sbjct: 302 VREAIPDAAITTDIIVGFPGETDKDFAETMRVVAESKFSAAFTFQYSIRPHTPAGVMADQ 361

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKE---KGKLVGRS--PWL 435
           V + +  ER   L + + +     N+A VG+ +EV+  E  G++     ++ GR+    L
Sbjct: 362 VPKPIVQERYERLVELVDDIAWQENEAQVGRTVEVMFAEGEGRKDEATHRVTGRACDNRL 421

Query: 436 QSVVLNSKNH--NIGDIIKVRIT 456
             V LN  +     GDI +V IT
Sbjct: 422 VHVSLNPGDDVPRPGDIGEVVIT 444


>gi|163753931|ref|ZP_02161054.1| 2-methylthioadenine synthetase [Kordia algicida OT-1]
 gi|161326145|gb|EDP97471.1| 2-methylthioadenine synthetase [Kordia algicida OT-1]
          Length = 481

 Score =  275 bits (703), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 165/461 (35%), Positives = 255/461 (55%), Gaps = 26/461 (5%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ +++SYGCQMN  DS  +  +   +G+   N +++ADL+++NTC IR+KA + V   L
Sbjct: 24  RKLYIESYGCQMNFADSEVVASILAKEGFNTTNRLEEADLVLVNTCSIRDKAEQTVRKRL 83

Query: 85  GRIRNLK--NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +   +K  N ++K G      V GC+A+    + L    IV++VVGP  Y  LP L++ 
Sbjct: 84  EKYNAVKRHNPKMKVG------VLGCMAERLKSKFLEEEKIVDMVVGPDAYKDLPNLIQE 137

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
              G+  V+   S E+ +  +S V    N   G+ A ++I  GCD  CTFCVVP+TRG E
Sbjct: 138 IDDGRNAVNVVLSKEETYGDISPVRLNTN---GINALVSITRGCDNMCTFCVVPFTRGRE 194

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNA--WRGKGL--DGEKCT---------FSD 249
            SR    +++E ++L D    EITLLGQNV++  W G GL  D +K +         F+ 
Sbjct: 195 RSRDPQSILEEIQELSDKNFKEITLLGQNVDSYLWYGGGLKKDFDKASEMQKATAVDFAK 254

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
           LL  ++     +RLR++TS+P+DM + +         +  ++HLPVQSGS+RILK MNR 
Sbjct: 255 LLDMVATKFPKLRLRFSTSNPQDMHESVFHVMAKHRNICKHIHLPVQSGSNRILKEMNRL 314

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369
           HT  EY  +ID+I+ + P   +S D I GFP ET++D + T+ L++ + Y   + F YS 
Sbjct: 315 HTREEYFALIDKIQEILPGCGVSQDLIAGFPTETEEDHQDTLSLMEYVKYDFGYMFTYSE 374

Query: 370 RLGT-PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK- 427
           R GT  G  M + V E  K  RL  + +  R+       + +  + EVLIE   K+  + 
Sbjct: 375 RPGTMAGRKMEDDVPEATKKRRLAEIIELQRKHSAFRTKSHLNTVQEVLIEGTSKKSDEH 434

Query: 428 LVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            +GR+      V   +N+  GD + V+I D   +TL GE +
Sbjct: 435 WMGRTSRNTVTVFPKENYKPGDFVNVKIYDCTSATLIGEAI 475


>gi|219123728|ref|XP_002182171.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217406132|gb|EEC46072.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 453

 Score =  275 bits (703), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 169/449 (37%), Positives = 262/449 (58%), Gaps = 12/449 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERV-NSMDDADLIVLNTCHIREKAAEKVYSF 83
           Q + +++ GCQMNV DS R+  +  ++   RV +   DADL++ NTC IR+ A +K+Y  
Sbjct: 2   QTYHIQTSGCQMNVADSERLAGVLRNELNMRVADQSQDADLVLFNTCSIRDHAEQKLYDA 61

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LG     K    K+   + ++V GCVAQ EGE +LRR P ++VV+GPQ    L  +LE  
Sbjct: 62  LGPYAAQKRKGQKQ---MALIVTGCVAQQEGEALLRRVPEIDVVLGPQYVPFLKNVLESV 118

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRG--VTAFLTIQEGCDKFCTFCVVPYTRGI 201
             G+++V T   +  +    S  D  +   RG  V A++ I  GC++ CT+CVVP TRG+
Sbjct: 119 SLGQQIVATAPMLLQEDVSGSSADWNHKPVRGHDVRAWVNIIHGCNEHCTYCVVPGTRGM 178

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE--IKG 259
           E SR++  ++ E   L   G  E+TLLGQN++A+ G+ +   K TF+DLL  L+    + 
Sbjct: 179 EQSRTMEAILQEIIDLGRRGYKEVTLLGQNIDAY-GRDM-VPKRTFADLLTFLNFRIPQD 236

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
            +R+RY TSHPR  SD +I A  +LD +    H+P Q+G D +L+ M R +T   Y +II
Sbjct: 237 DMRIRYVTSHPRYFSDRVIDAVANLDKVCECFHMPFQAGDDEVLRRMRRGYTYDSYMRII 296

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            +IR   PD AI  D IVGFPGETD+ F  T+ L++++ +    +F YSPR  T  +   
Sbjct: 297 RKIRDKAPDAAICGDVIVGFPGETDEGFEKTLQLMEEVHFDNLNTFAYSPRPNTEAATWD 356

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSV 438
           +QV ++VKAERL  +Q    E  +  +   VG+++ VL+E  + +   +++GR+   + V
Sbjct: 357 DQVPDSVKAERLQRVQTLAAEHGLERSMRYVGRVVPVLVEDGNPRNPAQVMGRTRQGRQV 416

Query: 439 VLNSKNHNI-GDIIKVRITDVKISTLYGE 466
             +     + G+I+ V IT+ +  +L GE
Sbjct: 417 YFDGDLAALRGEIVDVHITEARTWSLMGE 445


>gi|325680283|ref|ZP_08159843.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Ruminococcus albus 8]
 gi|324107992|gb|EGC02248.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Ruminococcus albus 8]
          Length = 465

 Score =  275 bits (703), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 165/445 (37%), Positives = 254/445 (57%), Gaps = 21/445 (4%)

Query: 28  FVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRI 87
           FV SYGCQ NV D  +++ M    GY+  +  D A LI+LNTC +RE A ++V+  +G  
Sbjct: 36  FVHSYGCQQNVSDGEKIKGMLAKVGYDFTDDTDSAQLILLNTCAVRENAEDRVFGNIGNF 95

Query: 88  RNLKNSRIKEGGDLLVVVAGCVAQAE--GEEILRRSPIVNVVVGPQTYYRLPELL-ERAR 144
           + LK    ++  +L++ + GC+AQ +   E+I      V++V G   Y  +  +L E   
Sbjct: 96  KKLK----EQNRELVIGICGCMAQQKHVAEKIKASYRQVDLVFGTFAYNDMYSMLWEVIS 151

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
             KR+ +   +  +  E ++ +     R+  V AFL I  GC+ FCT+C+VPY RG E S
Sbjct: 152 KHKRLFNQSEACTEIDESMTQL-----REDKVRAFLPIMYGCNNFCTYCIVPYVRGRERS 206

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R    V+ E R L++ G  EITLLGQNVN++        +  F  LL  + +I+G  R+R
Sbjct: 207 RKPEAVIAEVRSLVEQGYKEITLLGQNVNSY--------EYGFPALLREIDKIEGKYRIR 258

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           + +SHP+D +  LI A  D + +  +LHLPVQ+GS+R+LK+MNRR+T  +Y ++ID  RS
Sbjct: 259 FMSSHPKDATKELIDAIIDCEHVCTHLHLPVQAGSNRVLKAMNRRYTVEKYMEMIDYARS 318

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             PD + ++D IVGFPGET ++F  T +++ ++ Y   +SF YS R GTP +   + V +
Sbjct: 319 RVPDFSFTTDLIVGFPGETYEEFCETKEVIKRVKYDNIYSFVYSRRSGTPAAKFEDHVTD 378

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRSPWLQSVVLNSK 443
             K   L  L  + RE    +    VG+ +EVL+E  G+  +G L G++     V + + 
Sbjct: 379 KQKGLWLRELLLEQREITSEWFGRFVGRTVEVLVEGEGRTGEGWLTGKNDENIIVEVKAD 438

Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468
              IG+ ++VRIT      L GELV
Sbjct: 439 KKYIGEFVRVRITKAMNWALSGELV 463


>gi|15643418|ref|NP_228462.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Thermotoga
           maritima MSB8]
 gi|81553183|sp|Q9WZC1|MIAB_THEMA RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|4981175|gb|AAD35737.1|AE001738_17 conserved hypothetical protein [Thermotoga maritima MSB8]
          Length = 443

 Score =  275 bits (703), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 165/448 (36%), Positives = 266/448 (59%), Gaps = 24/448 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           RF++K++GCQMN  DS  M  +   +G+   +S ++AD++++NTC +R K+ EK YS LG
Sbjct: 2   RFYIKTFGCQMNENDSEAMAGLLVKEGFTPASSPEEADVVIINTCAVRRKSEEKAYSELG 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           ++  LK  +      ++V VAGCVA+ E E+ L +    + V+G +   R+ E +++A  
Sbjct: 62  QVLKLKKKKK-----IVVGVAGCVAEKEREKFLEKG--ADFVLGTRAVPRVTEAVKKALE 114

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G++V   +  +++    L  +     R     A++TI  GCD+FCT+C+VPYTRG E SR
Sbjct: 115 GEKVALFEDHLDEYTHELPRI-----RTSRHHAWVTIIHGCDRFCTYCIVPYTRGRERSR 169

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL-DGEKCTFSDLLYSLSEIKGLVRLR 264
            ++ +++E +KL + G  E+T LGQNV+A+ GK L DG   + + LL   S+I+G+ R+ 
Sbjct: 170 PMADILEEVKKLAEQGYREVTFLGQNVDAY-GKDLKDG--SSLAKLLEEASKIEGIERIW 226

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           + TS+P D SD LI+       +   +HLPVQSGS+RILK MNRR+T  EY  ++++IRS
Sbjct: 227 FLTSYPTDFSDELIEVIAKNPKVAKSVHLPVQSGSNRILKLMNRRYTKEEYLALLEKIRS 286

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ--- 381
             P++AISSD IVGFP ET++DF  T+DLV+K  + +     YSPR GT      +    
Sbjct: 287 KVPEVAISSDIIVGFPTETEEDFMETVDLVEKAQFERLNLAIYSPREGTVAWKYYKDDVP 346

Query: 382 VDENV-KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440
            +E V + + L+ LQK++  +    N+   G+ + +++E   K  G   GR    + +  
Sbjct: 347 YEEKVRRMQFLMNLQKRINRK---LNERYRGKTVRIIVEAQAK-NGLFYGRDIRNKIIAF 402

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
             ++  IG    V++  +    LYG++V
Sbjct: 403 EGEDWMIGRFADVKVEKITAGPLYGKVV 430


>gi|332299874|ref|YP_004441795.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Porphyromonas asaccharolytica DSM 20707]
 gi|332176937|gb|AEE12627.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Porphyromonas asaccharolytica DSM 20707]
          Length = 450

 Score =  275 bits (702), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 159/451 (35%), Positives = 259/451 (57%), Gaps = 19/451 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +R F+++YGCQMNV DS  +       GY+  + +D+AD +++NTC +R+ A +++   +
Sbjct: 10  KRVFIETYGCQMNVADSEIIAAQMQLAGYQLTDQIDEADAVLINTCSVRDNAEQRI---I 66

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R+ NL   R + G   +V V GC+A+   E +++    V++V GP  Y  LP L+  A 
Sbjct: 67  HRLDNLNGQRRRSGHPQIVGVLGCMAERVRETLIQDHG-VDLVAGPDAYTDLPHLIAAAE 125

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRG--VTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            G+  +  + S  + +  +  V     R  G  ++ F++I  GCD FCT+C+VPYTRG E
Sbjct: 126 AGEPAISIELSKSETYSDVIPV-----RLPGLHISGFVSIMRGCDNFCTYCIVPYTRGRE 180

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR    +V E +++   G  E+TLLGQNVN++  +   G   TF+DLL  ++E    +R
Sbjct: 181 RSRDPESIVREVQRMAQEGYREVTLLGQNVNSYCWQSETGVSYTFADLLRKVAEAVPTMR 240

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+T+ HP+DM D  ++       +  ++H P+QSGS+RIL+ M+RR+T   Y + ++RI
Sbjct: 241 IRFTSPHPKDMKDETLEVMSLYPNICRHIHFPLQSGSNRILERMHRRYTREWYLERVERI 300

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQ 381
           R   PD  +S+D   GF GET++DF+ T++++ +     AF FKYS R GT  S ++++ 
Sbjct: 301 RDYMPDCGLSTDVFCGFSGETEEDFQETLEVMRQARLDSAFMFKYSERPGTYASRHLVDD 360

Query: 382 VDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQS 437
           V E VK ERL   + LQ +L    +  N+  V +  EVLIE + K       GR+   + 
Sbjct: 361 VPEEVKVERLNRMIALQNEL---SLESNERDVDKSFEVLIEGYSKRSHDDFFGRTQQNKV 417

Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           +V    ++ IG ++ VR+  V  +T+ G  V
Sbjct: 418 IVFPKGHNQIGKLVTVRVERVTSATMIGSEV 448


>gi|328907278|gb|EGG27044.1| RNA modification enzyme, MiaB family [Propionibacterium sp. P08]
          Length = 493

 Score =  275 bits (702), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 164/443 (37%), Positives = 256/443 (57%), Gaps = 25/443 (5%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGY---ERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           + V +YGCQMNV+DS R+  +    GY    R +++  AD++V NTC +RE A  ++Y  
Sbjct: 17  YRVVTYGCQMNVHDSERIAGLLEEAGYVPDPRTDTLAPADVVVFNTCAVRENADNRLYGT 76

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LG + ++K++       + + V GC+AQ + + ++ R+P V+VV G      LP LL+RA
Sbjct: 77  LGHMASVKSA----NPGMQLAVGGCMAQKDKDAVVARAPWVDVVFGTHNVGSLPALLKRA 132

Query: 144 RFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           R      V+ + S+      L        R    +A+++I  GC+  CTFC+VP  RG E
Sbjct: 133 RHNATAQVEIEESLITFPSNLPT-----RRDSAYSAWVSISVGCNNTCTFCIVPQLRGRE 187

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLV 261
             R   +++ E R L+D GV E+TLLGQNVN++   G+  G++  F+ LL +   I GL 
Sbjct: 188 TDRRPGEILSEIRALVDEGVQEVTLLGQNVNSY---GVQFGDRGAFAKLLRACGNIDGLE 244

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+T+ HP   +D +I+A  +   +MP LH+P+QSGSD +L+ M R + + ++  I+DR
Sbjct: 245 RVRFTSPHPAAFTDDVIEAMAETPNVMPSLHMPLQSGSDEVLRRMRRSYRSTKFLGILDR 304

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R   PD AI++D IVGFPGETD DF  TM +V +  ++ AF+F+YS R  TP   M +Q
Sbjct: 305 VREAIPDAAITTDIIVGFPGETDKDFAETMRVVAESKFSAAFTFQYSIRPHTPAGVMADQ 364

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKE---KGKLVGRS--PWL 435
           V + +  ER   L + + +     N+A VG+ +EV+  E  G++     ++ GR+    L
Sbjct: 365 VPKPIVQERYERLVELVDDIAWQENEAQVGRTVEVMFAEGEGRKDEATHRVTGRACDNRL 424

Query: 436 QSVVLNSKNH--NIGDIIKVRIT 456
             V LN  +     GDI +V IT
Sbjct: 425 VHVSLNPGDDVPRPGDIGEVVIT 447


>gi|163814091|ref|ZP_02205483.1| hypothetical protein COPEUT_00244 [Coprococcus eutactus ATCC 27759]
 gi|158450540|gb|EDP27535.1| hypothetical protein COPEUT_00244 [Coprococcus eutactus ATCC 27759]
          Length = 483

 Score =  275 bits (702), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 168/444 (37%), Positives = 253/444 (56%), Gaps = 16/444 (3%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           ++++GCQMNV DS ++  +    GY R  S + AD I+ NTC +RE A  KVY  LG ++
Sbjct: 51  IQTFGCQMNVRDSEKLAGILEQMGYVRTES-EHADFIIYNTCTVRENANRKVYGHLGLMK 109

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPEL-LERARF 145
           +LK    ++  ++ + + GC+ Q +   E I +    V++V G    Y+L E+ + R   
Sbjct: 110 HLK----EKNPEMKIALCGCMMQEQHVVEIISKSYRFVDMVFGTHNVYKLAEIFVNRIES 165

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G  V+D     ++  E L  V     R+    + + I  GC+ FCT+C+VPY RG E SR
Sbjct: 166 GSMVIDIWKDAKEVVEDLPAV-----REFPFKSGVNIMFGCNNFCTYCIVPYVRGRERSR 220

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           +   ++ E  +L D+GV EI LLGQNVN++ GK L+    TF++LL  +  I+ + R+R+
Sbjct: 221 NPEDIIAECERLADDGVVEIMLLGQNVNSY-GKNLE-HPITFAELLRRICTIEKIQRVRF 278

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
            TSHP+D+SD LI    D   +  +LHLPVQSGS +IL +MNRR+T   Y  ++DRIR+ 
Sbjct: 279 MTSHPKDLSDELIDVIADNPKVCRHLHLPVQSGSTKILNAMNRRYTKESYLALVDRIRTK 338

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P+I++++D IVGFPGET++DF  TMD+V+K+ Y  AF+F YS R GTP + M     + 
Sbjct: 339 VPEISLTTDIIVGFPGETEEDFLETMDVVEKVQYDTAFTFIYSKRTGTPAAGMENGSTKE 398

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLNSKN 444
              +R   L ++++E       A  GQ   VL+E    K  G L GR      V      
Sbjct: 399 EIQDRYNRLLRRVQEISDVKTLAIKGQTQPVLVEGFDEKGDGLLTGRLSNNILVHFPGCA 458

Query: 445 HNIGDIIKVRITDVKISTLYGELV 468
             +G I+ V++ + K     GEL 
Sbjct: 459 EMVGKILNVKLVECKGFYYMGELA 482


>gi|116327643|ref|YP_797363.1| 2-methylthioadenine synthetase [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116330557|ref|YP_800275.1| 2-methylthioadenine synthetase [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
 gi|122281687|sp|Q04UA3|MIAB_LEPBJ RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|122284560|sp|Q053R5|MIAB_LEPBL RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|116120387|gb|ABJ78430.1| 2-methylthioadenine synthetase [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116124246|gb|ABJ75517.1| 2-methylthioadenine synthetase [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
          Length = 449

 Score =  275 bits (702), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 159/451 (35%), Positives = 254/451 (56%), Gaps = 28/451 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + ++++YGCQMN YDS  +  +     Y      +++D+I LNTC IRE A  K+Y+ L 
Sbjct: 12  KVYIETYGCQMNEYDSGIVSSLMKDAEYSSSPDPENSDIIFLNTCAIRENAHAKIYNRLQ 71

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +  LK    K   +L++ V GC+AQ  G+++  +   +++VVGP  Y  LPEL++R R 
Sbjct: 72  SLGYLK----KRNPELVIGVLGCMAQNLGDDLFHQELPLDLVVGPDNYRSLPELIQRIRS 127

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRK-RGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
           G+  +        +  ++   D    R   G+ AF+TI  GC+ FCTFCVVPYTRG E S
Sbjct: 128 GEHSISLT-----RLSKIETYDEIEPRVVNGIQAFVTIMRGCNNFCTFCVVPYTRGRERS 182

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R    +V E + L + G+ ++TLLGQNVN+++ +G D     F+ L+  L +   + R+R
Sbjct: 183 RDPKSIVREIQDLTEKGIRQVTLLGQNVNSYKEQGTD-----FAGLIQMLLDETTIERIR 237

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +T+ HP+D    L++         P +HLP+Q+G+ R+L+ M R ++  E+  ++  IR+
Sbjct: 238 FTSPHPKDFPVRLLRLMAQNPRFCPNIHLPLQAGNTRVLEEMKRSYSKEEFLDVVREIRN 297

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML-EQVD 383
           + PD+ I++D IVGFP ET+++F  T+ +V ++ +  AF FKYS R GT     L + V 
Sbjct: 298 IVPDVGITTDIIVGFPNETEEEFEDTLAVVREVQFDMAFMFKYSEREGTMARKKLPDNVS 357

Query: 384 ENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVV 439
           E  K+ R   L+ LQ  +  +Q   N A +G++  +LIE   ++  K L GR+P  +  V
Sbjct: 358 EETKSARLTKLVDLQTSISHEQ---NRARIGRVYSILIENTSRKSEKQLCGRTPCGRMTV 414

Query: 440 L-----NSKNHNIGDIIKVRITDVKISTLYG 465
                  S +  IG  + VRI     +TL G
Sbjct: 415 FPLPEGRSASEMIGSTVSVRIESATSATLKG 445


>gi|291563253|emb|CBL42069.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [butyrate-producing
           bacterium SS3/4]
          Length = 476

 Score =  275 bits (702), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 164/450 (36%), Positives = 258/450 (57%), Gaps = 18/450 (4%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P   F+ ++GCQMN  DS ++  +    GYE   + +++D ++ NTC +RE A  KVY  
Sbjct: 39  PLTCFINTFGCQMNARDSEKLLGILKEAGYEE-GTDENSDFVLYNTCTVRENANLKVYGR 97

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGE---EILRRSPIVNVVVGPQTYYRLPELL 140
           LG +  +K    ++  D+++ + GC+ Q E E   +I +    V+++ G    ++L ELL
Sbjct: 98  LGYLSGVK----RKNPDMMIALCGCMMQ-EPEVVAKIKKSYRHVDLIFGTHNIFKLAELL 152

Query: 141 -ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
            ER    K VVD      +  E L I      RK    + + I  GC+ FC++C+VPY R
Sbjct: 153 YERFMEKKMVVDVWEGTNEIVEELPI-----ERKYPFKSGVNIMFGCNNFCSYCIVPYVR 207

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G E SR    ++ E   L+ +GV E+ LLGQNVN++ GK L+ +  TF++LL  + +I+G
Sbjct: 208 GRERSREPEDIIKEIEGLVADGVVEVMLLGQNVNSY-GKNLE-QPITFAELLRRVEKIEG 265

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           L R+R+ TSHP+D+SD LI+   +   +  +LHLP+QSGS  ILK MNR+++  +Y  ++
Sbjct: 266 LERIRFMTSHPKDLSDELIETMKNSKKICSHLHLPLQSGSSEILKRMNRKYSKEQYLALV 325

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
           +++R+  PDI++++D IVGFPGET++DF  TMD+V K+ Y  AF+F YS R GTP + M 
Sbjct: 326 EKLRAAMPDISLTTDIIVGFPGETEEDFEETMDVVRKVRYDSAFTFIYSKRTGTPAAAMP 385

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSV 438
            Q+ E+V  +R   L K++++          G + +VL+E+    E   + GR      V
Sbjct: 386 NQIPEDVVKDRFDRLLKEVQDIASEVVKRHEGTVQKVLVEEIDTHEDSFVTGRLSNNTVV 445

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468
                   IG I+ V + + K     G LV
Sbjct: 446 HFAGDASLIGKIVDVSLDEAKGFYYMGSLV 475


>gi|160939143|ref|ZP_02086494.1| hypothetical protein CLOBOL_04037 [Clostridium bolteae ATCC
           BAA-613]
 gi|158438106|gb|EDP15866.1| hypothetical protein CLOBOL_04037 [Clostridium bolteae ATCC
           BAA-613]
          Length = 502

 Score =  275 bits (702), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 167/445 (37%), Positives = 253/445 (56%), Gaps = 26/445 (5%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           + ++GCQMN  DS ++  +  + GY+ V S + AD ++ NTC +RE A  +VY  LG++ 
Sbjct: 56  INTFGCQMNARDSEKLLGILETIGYQAVES-EKADFVLFNTCTVRENANLRVYGRLGQLG 114

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPEL----LER 142
             K    K   D+++ + GC+ Q E   E+I +    V+++ G    ++L EL    LER
Sbjct: 115 AYK----KTHPDMMIALCGCMMQEEEVVEKIRKSYRYVDLIFGTHNIFKLAELVSLCLER 170

Query: 143 ARFG-------KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
              G       K VVD     +   E L +      RK    + + I  GC+ FC++C+V
Sbjct: 171 RTQGGQKQGKTKMVVDVWKDTDQIVEDLPV-----ERKFPFKSGVNIMFGCNNFCSYCIV 225

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
           PY RG E SR   +++ E +KL  +GV EI LLGQNVN++ GK LD    TF+ LL  + 
Sbjct: 226 PYVRGRERSRRPEEIIKEIQKLAADGVVEIMLLGQNVNSY-GKNLDN-PMTFAQLLEEVE 283

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
           +I G+ R+R+ TSHP+D+SD LI+     + +  +LHLP+QSGS RILK MNRR+T  +Y
Sbjct: 284 KIDGIERIRFMTSHPKDLSDELIEVMARSEKICRHLHLPLQSGSSRILKVMNRRYTKEQY 343

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
             + +RI+   P I++++D IVGFPGETD+DF  TMD+V ++G+  AF+F YS R GTP 
Sbjct: 344 LDLAERIKKAVPGISLTTDIIVGFPGETDEDFEETMDVVRRVGFDSAFTFIYSKRTGTPA 403

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPW 434
           + M +QV E +  ER   L K++++         V  + EVL+E+ +    G + GR   
Sbjct: 404 AAMEDQVPEAIVKERFDRLLKEVQDISAEVCGRDVRTVQEVLVEEVNDHAPGLMTGRLSN 463

Query: 435 LQSVVLNSKNHNIGDIIKVRITDVK 459
              V        IG ++ V + + K
Sbjct: 464 NTVVHFPGDASMIGRLVPVYLQESK 488


>gi|78777940|ref|YP_394255.1| tRNA-i(6)A37 modification enzyme MiaB [Sulfurimonas denitrificans
           DSM 1251]
 gi|123768587|sp|Q30PR1|MIAB_SULDN RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|78498480|gb|ABB45020.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Sulfurimonas
           denitrificans DSM 1251]
          Length = 435

 Score =  274 bits (701), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 165/449 (36%), Positives = 253/449 (56%), Gaps = 24/449 (5%)

Query: 25  QRFFVKSYGCQMNVYDSLRM-EDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ F+++ GC MN  DS  M  ++   +GYE  N +  ADLI++NTC +REK   K++S 
Sbjct: 5   KKLFIETLGCAMNSRDSEHMIAELSEKEGYETTNDLSSADLIIINTCSVREKPVAKLFSE 64

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LG    + N R KEG    + V GC A   GEEI++R+P V+ V+G +   ++ E+L + 
Sbjct: 65  LG----VFNKRKKEGAK--IGVCGCTASHLGEEIIKRAPYVSFVLGARNVSKISEVLHKE 118

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYN--RKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           R  +  +D +Y  E +F         +N  R     A++ I  GCDK CT+C+VP TRG 
Sbjct: 119 RAVE--IDINYD-ESEF--------AFNDFRTSPYKAYINISIGCDKSCTYCIVPKTRGE 167

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE--KCTFSDLLYSLSEIKG 259
           EIS     ++ EA+K +  G  EI LLGQNVN + G+   GE  K +FS+LL  LS+I  
Sbjct: 168 EISIPTELILREAQKAVKGGAKEIFLLGQNVNNY-GRRFSGEHEKVSFSELLRRLSKIDA 226

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           L R+R+T+ HP  M D  I+       +   +H+P+QSGS ++LK M R +T   +   +
Sbjct: 227 LERIRFTSPHPFHMDDEFIEEFSSNPKICKSMHMPLQSGSSKVLKDMKRGYTKEWFLNRV 286

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            ++R++ PD++IS+D IV FPGE+D+DF  T+ ++ ++ + Q FSFKYSPR  T   +  
Sbjct: 287 QKLRAMSPDVSISTDIIVAFPGESDEDFEETLSIMREVKFDQIFSFKYSPRPETEAEHFT 346

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV 439
             VDE+V + RL  LQ          N   +G+I  V  E   ++     GRS     + 
Sbjct: 347 NIVDEDVASSRLTTLQNLAVNILDEKNKTHLGKIYRVYFEDLNQDY-YASGRSDNNLLIK 405

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
           +   +  +G+   V+ITD+  + L GE+V
Sbjct: 406 VKGSDELLGEFRDVKITDIGRTILSGEIV 434


>gi|302832307|ref|XP_002947718.1| hypothetical protein VOLCADRAFT_57473 [Volvox carteri f.
           nagariensis]
 gi|300267066|gb|EFJ51251.1| hypothetical protein VOLCADRAFT_57473 [Volvox carteri f.
           nagariensis]
          Length = 453

 Score =  274 bits (701), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 167/446 (37%), Positives = 249/446 (55%), Gaps = 23/446 (5%)

Query: 35  QMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSR 94
           QMN+ DS RM  +  + GYE       AD+++ NTC IREKA +KVYS LG+    K  R
Sbjct: 1   QMNMADSERMAGVLEAVGYECSQDASQADVLIYNTCSIREKAEQKVYSALGKQAKRKRDR 60

Query: 95  IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDY 154
           +   GDL +VVAGCVAQ EG+ +LRR P +++V+GPQ   R+ +LL++A   +       
Sbjct: 61  V---GDLKIVVAGCVAQQEGQTLLRRVPELDIVMGPQFANRIHDLLDQANDAQVCATEQV 117

Query: 155 SVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEA 214
           +VE+             R+  +TA++ +  GC++ CT+CVVPYTRG E SR    +  E 
Sbjct: 118 AVEEDITTP-------RRESNITAWVNVIYGCNEKCTYCVVPYTRGAEQSRRPDDIRREM 170

Query: 215 RKLIDNGVCEITLLGQNVNAWRGKGLDG--------EKCTFSDLLYSLSEIKGLVRLRYT 266
             L + G  E+TLLGQN++A+ G+ L G           TF+DLL  + ++ G+ R+R+ 
Sbjct: 171 LALGEAGYKEVTLLGQNIDAY-GRDLPGLAADASGRRAWTFTDLLRHVHDVPGIERIRFA 229

Query: 267 TSHPRDMSDC--LIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           TSHPR  +    L++A  +L  L  + H+P QSG + IL+ M R +T   YR IID IR 
Sbjct: 230 TSHPRYFTGKHRLVRACAELPKLCEFFHIPFQSGDNDILREMKRGYTHERYRAIIDNIRR 289

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             PD +IS D IVGFPGET++ + AT  LV ++G+ +  +  YSPR  TP +    QV +
Sbjct: 290 YMPDASISGDAIVGFPGETEEQYLATERLVREVGFDRVNTAAYSPRPNTPAAEWDNQVAD 349

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSPWLQSVVLNSK 443
            +K +RL  L K + +          G+ +EVL+E  + K   +  GR    + V  +  
Sbjct: 350 LIKQDRLNRLNKVVMDVATERAQRFQGRTLEVLVEGPNPKNPRQAFGRIRHNKLVYFDGD 409

Query: 444 NHNI-GDIIKVRITDVKISTLYGELV 468
            + + G ++  RI      +L+G L 
Sbjct: 410 GNELRGKLVLARIDQCNAFSLFGTLT 435


>gi|239906359|ref|YP_002953100.1| tRNA-i(6)A37 modification enzyme MiaB family protein [Desulfovibrio
           magneticus RS-1]
 gi|239796225|dbj|BAH75214.1| tRNA-i(6)A37 modification enzyme MiaB family protein [Desulfovibrio
           magneticus RS-1]
          Length = 446

 Score =  274 bits (701), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 170/460 (36%), Positives = 248/460 (53%), Gaps = 40/460 (8%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +F V + GCQMNV D   +     + G+ +    + A+  +L TC +R+K  +KV S +G
Sbjct: 2   KFHVTTMGCQMNVGDGDWLARSLIAAGFTQAPEAE-AECFILFTCSVRDKPEQKVVSEIG 60

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ----------TYYR 135
           RI +    R +   +  + V GC AQ  G  + RR P+V +V G                
Sbjct: 61  RIAD----RNRHNPNAFIAVGGCTAQQLGTTLWRRFPMVRLVFGTDGIAAAPRALARLAE 116

Query: 136 LPEL-LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCV 194
            P+L L    F +   + D S  D              K    AF++I +GCD +C +C+
Sbjct: 117 EPQLRLSLLDFSEAYPERDQSWPDD-------------KLPPKAFVSIMQGCDNYCAYCI 163

Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD--GEKCTFSDLLY 252
           VP+ RG + SR L  V+ E + L   GV E+TLLGQNVN++   GLD  G+  +F+ LL 
Sbjct: 164 VPFVRGRQKSRPLPSVIAECQSLASRGVREVTLLGQNVNSY---GLDDAGDGASFAKLLD 220

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
           +++ + G+ R+R+TTSHP+D+SD +I+    L  L P LHLPVQSGSD IL+ M RR+  
Sbjct: 221 AVAAVPGIERIRFTTSHPKDLSDEVIERFAALPQLCPALHLPVQSGSDDILRRMGRRYDT 280

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
             Y  +++++R   PDIA++SDFIVGFPGET  DF AT++LV K+G+   FSF YS R G
Sbjct: 281 AAYLTLVEKLRRACPDIALTSDFIVGFPGETRADFEATLELVRKVGFDSGFSFMYSDRPG 340

Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL---- 428
           T    +  ++    K+ RL  LQ  L E+  +   A +G+   VLIE   + +G L    
Sbjct: 341 TASEKLAPKILPEEKSARLAELQALLDERLAASLAARLGRREVVLIEGESRREGTLGATW 400

Query: 429 VGRSPW--LQSVVLNSKNHNIGDIIKVRITDVKISTLYGE 466
            GR P   + +V L +     G  + VRI   K  +L GE
Sbjct: 401 RGRDPGGRVVNVPLPAGADYAGRFVAVRIVQAKKHSLVGE 440


>gi|149194207|ref|ZP_01871305.1| tRNA-i(6)A37 modification enzyme MiaB [Caminibacter mediatlanticus
           TB-2]
 gi|149136160|gb|EDM24638.1| tRNA-i(6)A37 modification enzyme MiaB [Caminibacter mediatlanticus
           TB-2]
          Length = 422

 Score =  274 bits (701), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 163/451 (36%), Positives = 254/451 (56%), Gaps = 37/451 (8%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ +++++GCQMNV DS  +     S  Y    +  +ADLI+LNTC +REK  +K++S L
Sbjct: 2   KKLYIETFGCQMNVKDSEHI-IAELSDFYGTTQNPKEADLIILNTCSVREKPVQKLFSEL 60

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           G ++ + N   K G      V GC A   GEEI++++P V+ V+G +   R+ E++ + +
Sbjct: 61  GALKKI-NPNAKFG------VCGCTASHMGEEIIKKAPYVSFVLGARNVSRIKEVINKEK 113

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGY----NRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
               + D DY            D  Y     RK     F+ I  GCDK CTFC+VP TRG
Sbjct: 114 --AVITDIDYD-----------DTTYVFKNTRKNPYKDFVNIMVGCDKKCTFCIVPKTRG 160

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-GLDGEKCTFSDLLYSLSEIKG 259
            EIS  +  ++ +   L  +GV EITLLGQNVN +  +  +   K  F+DLL  +S+I G
Sbjct: 161 KEISIPMDLILKQVENLAKDGVKEITLLGQNVNNYGKRFSVPHSKVDFTDLLREVSKIDG 220

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           + R+R+T+ HP    D  +    +   +  ++H P+QSGS +IL+SM R    Y+    +
Sbjct: 221 VERIRFTSPHPLHADDKFLDEFANNPKICKHIHFPLQSGSSKILQSMKR---GYDKEWFL 277

Query: 320 DRIRSVR--PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
           +R   +R  PD+AIS+D IVGFPGE+++DF+ T+D+V+K+ + Q FSF YSPR  T  +N
Sbjct: 278 NRCEIIRQIPDVAISTDIIVGFPGESEEDFKDTLDVVEKVKFEQIFSFVYSPRPLTEAAN 337

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQS 437
              QVD+ V  +RL  LQ+   E     +   +G+I +VL+E+ G      +G+S    +
Sbjct: 338 YPNQVDKEVAKKRLWKLQELHAEILEEVSKKQIGKIYKVLVEEEG------MGKSDNFFT 391

Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           V L+     +G I+ V+I      TL G+++
Sbjct: 392 VKLDKDPTLLGKIVDVKIHKANKHTLKGQVI 422


>gi|24213805|ref|NP_711286.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Leptospira
           interrogans serovar Lai str. 56601]
 gi|45658409|ref|YP_002495.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Leptospira
           interrogans serovar Copenhageni str. Fiocruz L1-130]
 gi|81406958|sp|Q72PA4|MIAB_LEPIC RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|81470597|sp|Q8F743|MIAB_LEPIN RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|24194637|gb|AAN48304.1| 2-methylthioadenine synthetase [Leptospira interrogans serovar Lai
           str. 56601]
 gi|45601652|gb|AAS71132.1| conserved hypothetical protein [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 449

 Score =  274 bits (701), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 158/455 (34%), Positives = 256/455 (56%), Gaps = 28/455 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + ++++YGCQMN YDS  +  +     Y   +  +++D+I LNTC IRE A  K+Y+ L 
Sbjct: 12  KVYIETYGCQMNEYDSGIVSSLMRDAEYSTSSDPENSDIIFLNTCAIRENAHAKIYNRLQ 71

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +  LK    K   +L++ V GC+AQ  G+++  +   +++VVGP  Y  LPEL++R R 
Sbjct: 72  SLGYLK----KRNPNLVIGVLGCMAQNLGDDLFHQELPLDLVVGPDNYRSLPELIQRIRK 127

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRK-RGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
           G+  +        +  ++   D    R   G+ AF+TI  GC+ FCTFCVVPYTRG E S
Sbjct: 128 GENSISLT-----RLSKIETYDEIEPRVVNGIQAFVTIMRGCNNFCTFCVVPYTRGRERS 182

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R    +V E + L+  G+ +ITLLGQNVN+++ +  D     F+ L+  L +   + R+R
Sbjct: 183 RDPKSIVREVQDLVQKGIRQITLLGQNVNSYKEQDTD-----FAGLIQMLLDETSIERIR 237

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +T+ HP+D    L++   +     P +HLP+Q+G+ R+L+ M R ++  E+  ++  IR+
Sbjct: 238 FTSPHPKDFPTHLLQLMSENPRFCPNIHLPLQAGNTRVLEEMKRSYSKEEFLDVVKEIRN 297

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML-EQVD 383
           + PD+ I++D IVGFP ET+++F  T+ +V ++ +  AF FKYS R GT     L + V 
Sbjct: 298 IVPDVGITTDIIVGFPNETEEEFEDTLAVVREVQFDMAFMFKYSEREGTMAQRKLPDNVP 357

Query: 384 ENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSVV 439
           E VK+ R   L+ LQ  +  +Q   N A +G++  +LIE    K + +L GR+P  +  V
Sbjct: 358 EEVKSARLTKLVDLQTSISHEQ---NRARIGRVYSILIENISRKSEKQLCGRTPCGRMTV 414

Query: 440 LNSKNHN-----IGDIIKVRITDVKISTLYGELVV 469
                       IG  + V+I     +TL G ++ 
Sbjct: 415 FPLPQETNVSGMIGSTVSVQIESATSATLKGRILA 449


>gi|325263898|ref|ZP_08130631.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Clostridium sp. D5]
 gi|324030936|gb|EGB92218.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Clostridium sp. D5]
          Length = 481

 Score =  274 bits (701), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 165/452 (36%), Positives = 261/452 (57%), Gaps = 21/452 (4%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P  F V ++GCQMN  DS ++  +    GY+     + AD ++ NTC +RE A ++VY  
Sbjct: 44  PLTFCVVTFGCQMNARDSEKLVGILEQIGYQEETDEEKADFVIYNTCTVRENANQRVYGR 103

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQ-AEGEEILRRS-PIVNVVVGPQTYYRLPELLE 141
           LG++  +K    K+   +L+ + GC+ Q  E  E L++S   V+++ G    Y+  EL+ 
Sbjct: 104 LGQLNRVK----KKNPHMLIGLCGCMMQEPEVVEKLKKSYRFVDLIFGTHNIYKFAELIT 159

Query: 142 -RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
            R   G+ V+D  +   DK     + D    RK    + + I  GC+ FC++C+VPY RG
Sbjct: 160 TRLESGRMVIDI-WKDTDKI----VEDLPAERKYAFKSGVNIMFGCNNFCSYCIVPYVRG 214

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E SR+   ++ E  +L+ +GV E+ LLGQNVN++ GK L+ +  +F+ LL  + +I+GL
Sbjct: 215 RERSRNPLDIIREIEELVADGVIEVMLLGQNVNSY-GKTLE-QPMSFAQLLQEIEKIEGL 272

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+ TSHP+D+SD LI+  G  + +  +LHLP+QSGS RIL+ MNRR+T   Y +++ 
Sbjct: 273 RRIRFMTSHPKDLSDELIEVMGRSEKICRHLHLPIQSGSSRILEKMNRRYTKEHYLELVG 332

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           +IR+  PDI++++D IVGFPGET++DF+ T+D+V K+ Y  AF+F YS R GTP + M +
Sbjct: 333 KIRASVPDISLTTDIIVGFPGETEEDFQETLDIVRKVRYDSAFTFIYSKRTGTPAAVMED 392

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDAC---VGQIIEVLIEKHGKEKGKLV-GRSPWLQ 436
           QV E+V  +R     + L+E Q    + C        +VL+E        LV GR     
Sbjct: 393 QVPEDVVKDR---FDRLLKEVQSISGEVCSVYTDTTQDVLVETINDHDPALVTGRMSNNL 449

Query: 437 SVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            V        +G I+ V + + +     GE++
Sbjct: 450 LVHFPGDESLVGKIVSVHLKECRGFYYIGEML 481


>gi|293192300|ref|ZP_06609411.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Actinomyces odontolyticus
           F0309]
 gi|292820215|gb|EFF79209.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Actinomyces odontolyticus
           F0309]
          Length = 512

 Score =  274 bits (701), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 151/424 (35%), Positives = 248/424 (58%), Gaps = 30/424 (7%)

Query: 13  MVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDA---------- 62
           M +   D   +P+ + V++ GCQMN +DS RM  +    G   V  + +A          
Sbjct: 1   MNTMTQDGTALPRTYAVRTLGCQMNEHDSERMAGLLEQAGLIPVEQVPEAAARATDAGDM 60

Query: 63  --DLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRR 120
             D+IV+NTC +RE AA +++  LG++ ++K +R      + + V GC+AQ   + I+++
Sbjct: 61  GADVIVINTCSVRENAATRLFGNLGQLASVKRARPG----MQIAVGGCLAQQMRDGIVQK 116

Query: 121 SPIVNVVVGPQTYYRLPELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAF 179
           +P V+ V G      LP LL RA   +   V+ + S++     L       +R+    A+
Sbjct: 117 APWVDAVFGTHNIDVLPALLRRAEHNRAAAVEIEESLKVFPSTLPT-----HRESAYAAW 171

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
           ++I  GC+  CTFC+VP+ RG E  R    ++ E   +   G  E+TLLGQNVN++ G G
Sbjct: 172 VSISVGCNNTCTFCIVPHLRGKERDRRPGDILAEVEAVASQGAIEVTLLGQNVNSY-GVG 230

Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
             GE+  F+DLL ++  ++G+ R+R+T+ HP   +D +I A      +MP LH+P+QSGS
Sbjct: 231 F-GERGAFADLLRAVGRVEGIERVRFTSPHPAAFTDDVIAAMAQTPTVMPSLHMPLQSGS 289

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
           D IL+ M R +    +  I++R+R+  P+ AI++D IVGFPGET++DF+AT+D+V++  +
Sbjct: 290 DAILRQMRRSYRRERFMGILERVRAAIPEAAITTDIIVGFPGETEEDFQATLDVVEQARF 349

Query: 360 AQAFSFKYSPRLGTPGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEV 416
           + AF+F YSPR GTP ++  +QV ++V  E   RL+ LQ+++  +    N A  G  +EV
Sbjct: 350 SSAFTFLYSPRPGTPAADREDQVPDDVALERYQRLVKLQERICAED---NAALAGTEVEV 406

Query: 417 LIEK 420
           L+ +
Sbjct: 407 LVSE 410


>gi|331091143|ref|ZP_08339985.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Lachnospiraceae bacterium 2_1_46FAA]
 gi|330405365|gb|EGG84901.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Lachnospiraceae bacterium 2_1_46FAA]
          Length = 485

 Score =  274 bits (700), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 165/441 (37%), Positives = 250/441 (56%), Gaps = 23/441 (5%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           F V ++GCQMN  DS ++  +    GY      + AD I+ NTC +RE A  +VY  LG+
Sbjct: 50  FCVTTFGCQMNARDSEKLVGILEQIGYAEETDEEKADFIIYNTCTVRENANMRVYGRLGQ 109

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQ-AEGEEILRRS-PIVNVVVGPQTYYRLPELLERAR 144
           ++ +K    KE   +++ + GC+ Q  E  E L++S   V+++ G    Y+  EL+    
Sbjct: 110 LKRVK----KENPHMMIGLCGCMMQEPEVVEKLKKSYRFVDLIFGTHNIYKFAELIVTRF 165

Query: 145 FGKRVV-----DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
             +R+V     DTD  VED             RK    + + I  GC+ FC++C+VPY R
Sbjct: 166 ESERMVIDIWKDTDKIVEDL---------PSERKFSFKSGVNIMFGCNNFCSYCIVPYVR 216

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G E SR+   +V E  +L+ +GV E+ LLGQNVN++ GK L+    TF+ LL  + +I G
Sbjct: 217 GRERSRNPKDIVREIERLVADGVVEVMLLGQNVNSY-GKNLET-PMTFAQLLQEVEKIDG 274

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           L R+R+ TSHP+D+SD LI+   +   +  +LHLPVQSGS RIL+ MNRR+T  +Y +++
Sbjct: 275 LKRIRFMTSHPKDLSDDLIEVMKNSKKICKHLHLPVQSGSSRILQKMNRRYTKEQYLELV 334

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            +I++  PDI++++D IVGFPGET++DF  TMD+V ++ Y  AF+F YS R GTP + M 
Sbjct: 335 RKIKTAIPDISLTTDIIVGFPGETEEDFLETMDVVKQVRYDSAFTFIYSKRTGTPAATME 394

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GRSPWLQSV 438
            Q+ ++V  +R   L K+++           G   EVL+E        LV GR      V
Sbjct: 395 NQIADDVVKDRFDRLLKEVQGISTEVCGVHTGTTQEVLVESLNDHDDSLVTGRLSNNILV 454

Query: 439 VLNSKNHNIGDIIKVRITDVK 459
                   IG I+ V++ + K
Sbjct: 455 HFPGDEDLIGKIVDVKLEECK 475


>gi|297624625|ref|YP_003706059.1| RNA modification enzyme, MiaB family [Truepera radiovictrix DSM
           17093]
 gi|297165805|gb|ADI15516.1| RNA modification enzyme, MiaB family [Truepera radiovictrix DSM
           17093]
          Length = 444

 Score =  274 bits (700), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 166/437 (37%), Positives = 254/437 (58%), Gaps = 13/437 (2%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V ++GCQMN YD+  +     + G++ V++  DA+LI+LNTC +R K  EKV S LG  R
Sbjct: 5   VITHGCQMNEYDTHTILSELVAGGHQIVDTPADAELIILNTCAVRGKPVEKVISLLGEFR 64

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
             K +    G DL V + GC+AQ E  + L +   V+++VGP     + ++L+     + 
Sbjct: 65  KQKLA----GRDLTVGMMGCLAQLEEGQALAKKFGVDILVGPGA---ITDILKAIEAVET 117

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
             ++ +S++ K +  S +    N    +T FLTI  GC+  CT+C+VP TRG E+SRSL 
Sbjct: 118 RGESFWSLDFKDDLHSYLTPPPNT---LTGFLTIMRGCNHHCTYCIVPQTRGPEVSRSLE 174

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
            ++ EAR +   GV EI LLGQNVN++ G G   +  +F++LL  L    G+ R+++TTS
Sbjct: 175 SIMHEARAMQAAGVQEIYLLGQNVNSY-GLGRP-DLPSFAELL-RLVAATGIPRVKFTTS 231

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
           HP + +  +I A  + D +  Y+HLPVQSGSDR+L+ M R +    Y +II  I++  PD
Sbjct: 232 HPMNFTSDVIDAMAECDNVCKYIHLPVQSGSDRVLRRMAREYRRARYLEIIAEIKAKIPD 291

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           + IS+D IVGFPGET++DF AT+ L D++G+  A+ F YS R GTP     + +   VK 
Sbjct: 292 VVISTDIIVGFPGETEEDFEATLTLYDEVGFDHAYMFMYSARPGTPSYKHFKDLPREVKT 351

Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIG 448
           ERL  L ++ +      N   VG+ + VL+++   +   LVG S    +V++  +     
Sbjct: 352 ERLGRLIERQKYWSNRRNARWVGRNLRVLVKEVATDGQYLVGHSDQNHTVLVPKEQVRTL 411

Query: 449 DIIKVRITDVKISTLYG 465
            + +VRI      TLYG
Sbjct: 412 GLHEVRIDSATPHTLYG 428


>gi|229824790|ref|ZP_04450859.1| hypothetical protein GCWU000182_00139 [Abiotrophia defectiva ATCC
           49176]
 gi|229791119|gb|EEP27233.1| hypothetical protein GCWU000182_00139 [Abiotrophia defectiva ATCC
           49176]
          Length = 515

 Score =  274 bits (700), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 168/467 (35%), Positives = 261/467 (55%), Gaps = 34/467 (7%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDA-DLIVLNTCHIREKAAEKVYSFLG 85
           F   ++GCQMN  DS ++  +    G+E  N+ D + D ++LNTC IRE A +KVY  LG
Sbjct: 56  FNCNTFGCQMNFRDSEKIAGILEKIGFE--NTEDKSPDFVILNTCTIRENADQKVYGNLG 113

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERA 143
            ++ LK        ++++ + GC+ Q     +++      ++++ G    Y+L EL+  A
Sbjct: 114 YLKKLKEL----NPNMIIALCGCMMQETTVVQKLRESYSFIDLIYGTHNIYKLAELV-FA 168

Query: 144 RFGKRVVDTDYSVED----KFERLSIVDGGYN-----------RKRGVTAFLTIQEGCDK 188
            F  +     + V+     K +   +VD   +           RK    A + I  GCD 
Sbjct: 169 MFALKSYAAHHPVKKNGKYKIKHSMLVDIWKDTDKIVEDLPDERKYSFKASVNITYGCDN 228

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK---C 245
           FCT+C+VPY RG E SR    +V E + L D GV EI LLGQNVN++ GKGL+GEK    
Sbjct: 229 FCTYCIVPYVRGRERSRRPGDIVKEVKCLADAGVIEIMLLGQNVNSY-GKGLEGEKGEPV 287

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
           TF++LL  + +++G+ R+R+ T HP+D SD LI+   D + +  ++HLP Q+GS+ +L+ 
Sbjct: 288 TFANLLRMVEKVEGIKRIRFMTPHPKDFSDELIEVIADSEKICKHIHLPFQAGSNNVLRR 347

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           MNRR+T   Y ++  +I++  PDIA+++D IVGFPGET++DF  T+D+V ++ Y  A+ F
Sbjct: 348 MNRRYTKESYLELAGKIKTRIPDIALTTDIIVGFPGETEEDFEDTLDVVKEVRYQSAYMF 407

Query: 366 KYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK 425
           +YS R GTP + M +QVD      R   LQ  + E         VG + EVL E+   E+
Sbjct: 408 EYSKRTGTPAATMEDQVDAEAVKRRFKRLQDTVAEYADDKFGNKVGCMAEVLAEEVNSEE 467

Query: 426 -----GKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
                G++   +     V  ++K   IG ++KV+IT+     L GEL
Sbjct: 468 PLIITGRMSDNTLVHFKVPTDNKEDYIGKLLKVKITENCRFYLMGEL 514


>gi|157364247|ref|YP_001471014.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Thermotoga
           lettingae TMO]
 gi|229891012|sp|A8F716|MIAB_THELT RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|157314851|gb|ABV33950.1| RNA modification enzyme, MiaB family [Thermotoga lettingae TMO]
          Length = 436

 Score =  274 bits (700), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 170/450 (37%), Positives = 265/450 (58%), Gaps = 29/450 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R F K+YGCQMN+ D+  M  +    GYE VN  ++AD+++LNTC +R+K+ EK +S LG
Sbjct: 2   RVFFKTYGCQMNLNDTETMAGILSQHGYEVVNLPEEADIVILNTCVVRQKSQEKYHSALG 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           +   LK S    G   L+ +AGC +  EGEE+++     + V+G ++  ++ E+L++A  
Sbjct: 62  QFVKLKKS----GKIKLIGIAGCGSNLEGEELIKSG--ADFVIGSRSIGKIAEVLQKAAR 115

Query: 146 GKRVV---DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           G+++V   D   +V+ K  R+        R     A++TI  GC++FCT+C+VPYTRG E
Sbjct: 116 GEKIVYLEDDICTVDSKTPRM--------RFSKHHAWITIIHGCNRFCTYCIVPYTRGRE 167

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL-DGEKCTFSDLLYSLSEIKGLV 261
            SR L  V+ E  KL  NGV EIT LGQNV+A+ GK L DG     + L+    + + + 
Sbjct: 168 KSRPLPDVLLEVEKLAKNGVKEITFLGQNVDAY-GKDLKDG--TNLASLIEQAGKFEQIK 224

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+ + TS+P D++D LI+   +        H+PVQSGS+RIL+ MNRR+   ++ Q++++
Sbjct: 225 RIWFLTSYPTDITDKLIETVAEDPKAAKSFHIPVQSGSNRILRLMNRRYDRDQFLQLVEK 284

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML-E 380
           IRS  P  +ISSD IVGFP ET+ D+  TMDLV K  + +     YSPR GT  S    +
Sbjct: 285 IRSKIPHASISSDIIVGFPTETEYDYMQTMDLVRKARFERLNLAVYSPRQGTVASKYFKD 344

Query: 381 QVDENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQS 437
            V    K +R   LL LQK++  +    N   +G+++E+++E   KE G   GR    + 
Sbjct: 345 DVPREEKVQRLNKLLELQKQINRE---LNMQYLGKVVEIIVEGKTKE-GLYYGRDIRNKV 400

Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
           ++ +S+  + G+ + ++I  +    LYG+L
Sbjct: 401 IIFSSQEVSEGENVLLKIDKITAGPLYGKL 430


>gi|154483536|ref|ZP_02025984.1| hypothetical protein EUBVEN_01240 [Eubacterium ventriosum ATCC
           27560]
 gi|149735446|gb|EDM51332.1| hypothetical protein EUBVEN_01240 [Eubacterium ventriosum ATCC
           27560]
          Length = 468

 Score =  273 bits (699), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 166/445 (37%), Positives = 251/445 (56%), Gaps = 18/445 (4%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V ++GCQMN  DS ++  +    GY+  +  + ADL++ NTC +RE A  K+Y  LG + 
Sbjct: 36  VVTFGCQMNFKDSEKLMGILSQIGYQETDD-EHADLVLYNTCTVRENANLKIYGRLGYL- 93

Query: 89  NLKNSRIKEGG-DLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELL-ERAR 144
               S+IKE   ++++ + GC+ Q     E++ +    V+++ G    ++L ELL +R  
Sbjct: 94  ----SKIKEKNPEMIIGLCGCMMQEPQVVEKLNKSYRFVDIIFGTHNVFQLAELLYDRLI 149

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G R+ D      +  E L  +     RK    + + I  GC+ FC++C+VPY RG E S
Sbjct: 150 GGHRIEDIWDGTTEIVEDLPTI-----RKYDFKSGVNIMYGCNNFCSYCIVPYVRGRERS 204

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R+   +V E  +L+ NGV E+ LLGQNVN++ GK LD    +F+ LL  + +++GL R+R
Sbjct: 205 RNPEDIVKEVEELVSNGVVEVMLLGQNVNSY-GKTLDN-PISFAKLLEMVEQVEGLERIR 262

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           + TSHP+D+SD LI+       +   +HLP+QSGS R+LK MNR +   +Y  ++D++R+
Sbjct: 263 FMTSHPKDLSDELIEVMAKSKKICKQMHLPLQSGSSRLLKIMNRHYDKEQYLTLVDKLRA 322

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             PDI IS+D IVGFPGETD+DF  T+D+V K  Y  AF+F YS R GTP + M +QV E
Sbjct: 323 AIPDIGISTDIIVGFPGETDEDFEETLDVVRKARYDSAFTFIYSKRSGTPAATMPDQVPE 382

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRSPWLQSVVLNSK 443
           +V  ER   L   + E          G +  VL+E+  K+  G + GR      V     
Sbjct: 383 DVVKERFDRLLNLVNEISREKTKHLEGTVQSVLVEELNKKIPGYVTGRLSNNSVVHFEGC 442

Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468
              IG I+ V + + K     GE+V
Sbjct: 443 KELIGKIVDVNLKEAKGFYYMGEMV 467


>gi|260885970|ref|ZP_05736252.2| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella tannerae ATCC
           51259]
 gi|260851116|gb|EEX70985.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella tannerae ATCC
           51259]
          Length = 458

 Score =  273 bits (698), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 159/448 (35%), Positives = 252/448 (56%), Gaps = 13/448 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +   +++YGCQMNV DS  +  +    GYE   ++D+AD + LNTC +R+ A +++   L
Sbjct: 19  KHLLIETYGCQMNVADSEVVASVMKMAGYEPTENLDEADAVFLNTCSVRDNAEQRIIHRL 78

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             +  L+    K G  L++ V GC+A+   E +L      ++V GP  Y  LP+L+ +A 
Sbjct: 79  DALHALR----KHGRRLIIGVLGCMAERVKEGLLHDHH-ADLVAGPDAYLSLPDLIAQAE 133

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G + ++ + S  + + R  + +     K  ++ F++I  GC+ FC +C+VPYTRG E S
Sbjct: 134 AGHKAMNIELSTSETY-RDVVPERVCGSK--LSGFVSIMRGCNNFCHYCIVPYTRGRERS 190

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNA--WRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           R +  ++ E   L D    E+TLLGQNVN+  W+      E   F  LL  ++     +R
Sbjct: 191 RDVESILREVADLHDKHFKEVTLLGQNVNSYCWQADE-QSEAVNFPGLLRRVARAFPDMR 249

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+ T HP+DMSD  +    +   +  ++HLPVQSGS+RILK MNR++T   Y   +  I
Sbjct: 250 IRFVTPHPKDMSDETLHVIAEEPNVCRHIHLPVQSGSNRILKLMNRKYTREWYLDRVAAI 309

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML-EQ 381
           R + P+  +S+D  VG+  ET +D + ++ L++++GY  AF FKYS R GT  S  L + 
Sbjct: 310 RRIVPECGLSTDIFVGYCSETPEDHQESLSLMEEVGYDSAFMFKYSERPGTYASKHLPDD 369

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVL 440
           + E VK ERL  L      +    N  C G++ EVLIE   K  + +L GR+   + V+ 
Sbjct: 370 ISEAVKVERLEELIALQNRKSAEANRRCEGKVYEVLIEGTSKRSRDQLFGRTEQNKVVIF 429

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
           +  NH+ G+ I+VR+T    +TL GE+V
Sbjct: 430 DRGNHHPGEFIRVRVTGSSSATLLGEVV 457


>gi|326798175|ref|YP_004315994.1| (dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Sphingobacterium sp. 21]
 gi|326548939|gb|ADZ77324.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Sphingobacterium sp. 21]
          Length = 477

 Score =  273 bits (698), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 160/453 (35%), Positives = 258/453 (56%), Gaps = 16/453 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ +++SYGCQMN  DS  +  +   +G+       +AD++ +NTC IRE A ++V +  
Sbjct: 31  RKLYIESYGCQMNFADSEIVASILLDKGFSTTPDYKEADVVFINTCSIRENAEQRVRN-- 88

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R++  +++++K+ G ++V V GC+A+    + L    +V+VVVGP  Y  LP L+E+  
Sbjct: 89  -RLKEFESAKLKKPG-MIVGVLGCMAERLKSKFLEEEKLVDVVVGPDAYRDLPNLIEKVD 146

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G R V+   S E+ +  ++ V    N   GVTAF++I  GCD  C+FCVVP+TRG E S
Sbjct: 147 DGSRAVNVLLSREETYADINPVRLNTN---GVTAFISIMRGCDNMCSFCVVPFTRGRERS 203

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC------TFSDLLYSLSEIK 258
           R    +V EAR L   G  E+TLLGQNV++++    + +        TF+ LL  ++ + 
Sbjct: 204 RDPYSIVKEARDLFKAGYREVTLLGQNVDSYKWSPQEDDAAANHTTITFAKLLEMVAAVD 263

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
            L+R+R++TSHP+D++D ++ +    + +  Y+HLPVQSG+ RIL+ MNR +    Y + 
Sbjct: 264 PLLRVRFSTSHPKDITDEVLYSIARHENICNYIHLPVQSGNSRILELMNRTYDRAWYMER 323

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT-PGSN 377
           ID I+ + PD AIS+D I GF  ET+++ + T+ ++D + Y  A+ F YS R GT     
Sbjct: 324 IDTIKRIIPDCAISTDVITGFCSETEEEHQDTLSMMDYVQYDYAYMFAYSERPGTLAAKR 383

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQ 436
             + + E +K  RL  + +K R   +      VG+I +VLIE   K   K   GR+    
Sbjct: 384 YADDIPEEIKKRRLTEVVEKQRAHSLFRLQQQVGKIHKVLIEGFSKRSDKDYCGRNDQNA 443

Query: 437 SVVLN-SKNHNIGDIIKVRITDVKISTLYGELV 468
            VV      + +GD + V       +TL G++V
Sbjct: 444 MVVFPVDARYKVGDYVNVMAETCTSATLIGKIV 476


>gi|315101123|gb|EFT73099.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes
           HL046PA1]
          Length = 494

 Score =  273 bits (697), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 150/399 (37%), Positives = 235/399 (58%), Gaps = 17/399 (4%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGY---ERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           + V +YGCQMNV+DS R+  +    GY    R +++  AD++V NTC +RE A  ++Y  
Sbjct: 14  YRVVTYGCQMNVHDSERIAGLLEEAGYVPDPRTDTLAPADVVVFNTCAVRENADNRLYGT 73

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LG +  +K++       + + V GC+AQ + + ++ R+P V+VV G      LP LL+RA
Sbjct: 74  LGHMAAVKSAHPG----MQLAVGGCMAQKDKDTVVARAPWVDVVFGTHNVGSLPVLLKRA 129

Query: 144 RFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           R      V+ + S+      L        R    +A+++I  GC+  CTFC+VP  RG E
Sbjct: 130 RHNATAQVEIEESLVTFPSNLPA-----RRDSAYSAWVSISVGCNNTCTFCIVPQLRGKE 184

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLV 261
             R   +++ E R L++ GV EITLLGQNVN++   G+  G++  F+ LL +   I GL 
Sbjct: 185 TDRRPGEILSEIRALVNEGVQEITLLGQNVNSY---GVQFGDRGAFAKLLRACGNIDGLE 241

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+T+ HP   +D +I+A  +   +MP LH+P+QSGSD +L+ M R + + ++  I+DR
Sbjct: 242 RVRFTSPHPAAFTDDVIEAMAETPNVMPSLHMPLQSGSDEVLRRMRRSYRSTKFLGILDR 301

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R   P +AI++D IVGFPGETD DF  TM +V++  ++ AF+F+YS R  TP   M +Q
Sbjct: 302 VREAIPHVAITTDIIVGFPGETDKDFAETMRIVEESRFSAAFTFQYSIRPNTPAGVMKDQ 361

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
           V + V  ER   L + + +     N A VG+ +EV+  +
Sbjct: 362 VPKPVVQERYEQLVELVDDIAWQENKAQVGRAVEVMFAQ 400


>gi|302525513|ref|ZP_07277855.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Streptomyces sp. AA4]
 gi|302434408|gb|EFL06224.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Streptomyces sp. AA4]
          Length = 493

 Score =  273 bits (697), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 152/415 (36%), Positives = 239/415 (57%), Gaps = 24/415 (5%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           + ++++GCQMNV+DS R+       GY         DL+V NTC +RE A  K+Y  LG 
Sbjct: 6   YQIRTFGCQMNVHDSERLAGQLEEAGYVPAAGQAKPDLVVFNTCAVRENADNKLYGTLGH 65

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           +R  K +      D+ + V GC+AQ +  +I++R+P V+VV G      LP LLERAR  
Sbjct: 66  LRPDKVANP----DMQIAVGGCLAQKDRGDIVKRAPWVDVVFGTHNIGSLPTLLERARHN 121

Query: 147 KRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
               V+   S+E     L        R+    +++++  GC+  CTFC+VP  RG E  R
Sbjct: 122 AEAEVEILESLETFPSTLPA-----RRESSYASWVSVSVGCNNTCTFCIVPSLRGKERDR 176

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLR 264
              +++ E   L+  GV E+TLLGQNVN++   G++ G++  F  LL +   I GL R+R
Sbjct: 177 RPGEILAEVEALVAEGVLEVTLLGQNVNSY---GVEFGDRLAFGKLLRATGGIDGLERVR 233

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +T+ HP   +  +I A  +   +   LH+P+QSGSDR+L+ M R + +  +  I+D +R+
Sbjct: 234 FTSPHPAAFTSDVIDAMAETPNVCHQLHMPLQSGSDRVLREMRRSYRSARFLNILDEVRA 293

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             PD AI++D IVGFPGET++DF+AT+D+V    ++ AF+F+YS R GTP + M EQ+ +
Sbjct: 294 AMPDAAITTDIIVGFPGETEEDFQATLDVVRAARFSSAFTFQYSKRPGTPAAEMAEQLPK 353

Query: 385 NVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIE----KHGKEKGKLVGRS 432
            V  E   RL+ LQ ++  ++   N   VG+ +E+L+     +   E  ++ GR+
Sbjct: 354 EVVQERYDRLVELQNEISWEE---NRKLVGRRVELLVAAGEGRKDAETHRMSGRA 405


>gi|197303393|ref|ZP_03168432.1| hypothetical protein RUMLAC_02115 [Ruminococcus lactaris ATCC
           29176]
 gi|197297391|gb|EDY31952.1| hypothetical protein RUMLAC_02115 [Ruminococcus lactaris ATCC
           29176]
          Length = 490

 Score =  273 bits (697), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 163/413 (39%), Positives = 239/413 (57%), Gaps = 28/413 (6%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           F V ++GCQMN  DS ++  +    GY      + AD ++ NTC +RE A  +VY  LG+
Sbjct: 53  FCVTTFGCQMNARDSEKLVGILEQIGYVEEPDEEKADFVIYNTCTVRENANLRVYGRLGQ 112

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQ-AEGEEILRRS-PIVNVVVGPQTYYRLPELLERAR 144
           +  +K    K+   +++ + GC+ Q  E  E L++S   V+++ G    Y+  ELL  + 
Sbjct: 113 LGRIK----KKNPHMMIALCGCMMQEPEVVEKLKKSYRFVDLIFGTHNIYKFAELLTNSM 168

Query: 145 FGKRVV-----DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
              R+V     DTD  VED       V+  Y+ K GV     I  GC+ FC++C+VPY R
Sbjct: 169 QSDRMVIDIWKDTDKIVED-----LPVERKYSFKSGVN----IMFGCNNFCSYCIVPYVR 219

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G E SR    +V E  +L+ +GV E+ LLGQNVN++ GK L+    TF+ LL  + +I+G
Sbjct: 220 GRERSRDPKAIVREIERLVADGVVEVMLLGQNVNSY-GKNLE-HPMTFAQLLQEIEKIEG 277

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           L R+R+ TSHP+D+SD LI+       +  +LHLPVQSGS RILK MNR +T   Y +++
Sbjct: 278 LERIRFMTSHPKDLSDELIEVMSRSKKICRHLHLPVQSGSSRILKKMNRHYTKEHYLELV 337

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
           D+I+   PDI++++D IVGFPGET++DFR T+D+V K+ Y  AF+F YS R GTP + M 
Sbjct: 338 DKIKKAVPDISLTTDIIVGFPGETEEDFRETLDVVRKVRYDSAFTFIYSKRTGTPAAVME 397

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACV---GQIIEVLIEKHGKEKGKLV 429
           +QV E    +R     + L+E Q      C    G I + L+E   +    LV
Sbjct: 398 DQVSEAEVKDR---FDRLLKEVQTISAQRCAIHEGTIQKALVECQNEHDPSLV 447


>gi|110638221|ref|YP_678430.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Cytophaga
           hutchinsonii ATCC 33406]
 gi|123058778|sp|Q11U26|MIAB_CYTH3 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|110280902|gb|ABG59088.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Cytophaga hutchinsonii
           ATCC 33406]
          Length = 481

 Score =  273 bits (697), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 161/449 (35%), Positives = 260/449 (57%), Gaps = 13/449 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ +++SYGCQMN  DS  +  +   +G++  ++ ++AD+I+LNTC IR+ A +KV   L
Sbjct: 38  RKLYIESYGCQMNFSDSEIVMSILTEEGFDTTSTPNNADVILLNTCSIRDNAEQKVRHRL 97

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
              + LK ++      ++V V GC+A+    ++L    IV++VVGP  Y  LP L+    
Sbjct: 98  VHFKGLKRNK----PSMIVGVLGCMAERLKAQLLEEEKIVDMVVGPDAYRDLPNLINEVD 153

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G + V+   S E+ +  ++ +    +   GV+AF++I  GCD  C+FCVVPYTRG E S
Sbjct: 154 SGHKAVNVFLSREETYADINPLRLSGD---GVSAFVSIMRGCDNMCSFCVVPYTRGRERS 210

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNA--WRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           R    +++E R+L+ NG  E+TLLGQNV++  W  +G D E+  F+ LL  ++ +   +R
Sbjct: 211 RDAHSILNEVRELVANGYKEVTLLGQNVDSYKWSAEGTD-ERVNFAQLLERVALVDPDLR 269

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R++TSHP+D++D ++      D +   +HLP QSG+ RIL+ MNR +T   Y + I +I
Sbjct: 270 VRFSTSHPKDITDEVLYTMKKYDNICNSIHLPAQSGNTRILELMNRTYTREWYMERITKI 329

Query: 323 RSVR-PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML-E 380
           R +   D  ISSD I GF  ET+++ + T+ L++   +   + F YS R GTP +  L +
Sbjct: 330 RQILGDDCGISSDTIAGFCSETEEEHQDTLSLMEFARFDFGYQFVYSERPGTPAAKKLAD 389

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSVV 439
            V E+VK  RL  +    R+  +  N A +G I ++LIE    K +  L GR+      +
Sbjct: 390 DVPEDVKQRRLSEIITVQRQLSLEHNQAQIGTIQKILIEGVSKKSEHDLKGRNSRNMMAI 449

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
              KN++ G  + V IT     TL+GE+V
Sbjct: 450 FPKKNYSKGQYVDVLITGCSGGTLFGEIV 478


>gi|314966778|gb|EFT10877.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes
           HL082PA2]
          Length = 492

 Score =  273 bits (697), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 150/399 (37%), Positives = 234/399 (58%), Gaps = 17/399 (4%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGY---ERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           + V +YGCQMNV+DS R+  +    GY    R +++  AD++V NTC +RE A  ++Y  
Sbjct: 14  YRVVTYGCQMNVHDSERIAGLLEEAGYVPDPRTDTLAPADVVVFNTCAVRENADNRLYGT 73

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LG +  +K++       + + V GC+AQ + + ++ R+P V+VV G      LP LL+RA
Sbjct: 74  LGHMAAVKSAHPG----MQLAVGGCMAQKDKDAVVARAPWVDVVFGTHNVGSLPVLLKRA 129

Query: 144 RFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           R      V+ + S+      L        R    +A+++I  GC+  CTFC+VP  RG E
Sbjct: 130 RHNATAQVEIEESLVTFPSNLPA-----RRDSAYSAWVSISVGCNNTCTFCIVPQLRGKE 184

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLV 261
             R   +++ E R L+D GV EITLLGQNVN++   G+  G++  F+ LL +   I GL 
Sbjct: 185 TDRRPGEILSEIRALVDEGVQEITLLGQNVNSY---GVQFGDRGAFAKLLRACGNIDGLE 241

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+T+ HP   +D +I+A  +   +MP LH+P+QSGSD +L+ M R + + ++  I+DR
Sbjct: 242 RVRFTSPHPAAFTDDVIEAMAETPNVMPSLHMPLQSGSDEVLRRMRRSYRSTKFLGILDR 301

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R   P  AI++D IVGFPGETD DF  TM +V++  ++ AF+F+YS R  TP   M +Q
Sbjct: 302 VREAIPHAAITTDIIVGFPGETDKDFAETMRIVEESRFSAAFTFQYSIRPNTPAGVMEDQ 361

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
           V + V  ER   L + + +     N A +G+ +EV+  +
Sbjct: 362 VPKPVVQERYEQLVELVDDIAWQENKAQIGRAVEVMFAQ 400


>gi|312898810|ref|ZP_07758198.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Megasphaera
           micronuciformis F0359]
 gi|310619972|gb|EFQ03544.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Megasphaera
           micronuciformis F0359]
          Length = 453

 Score =  272 bits (696), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 158/437 (36%), Positives = 251/437 (57%), Gaps = 16/437 (3%)

Query: 36  MNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRI 95
           MN  DS R        GY      + AD+I++NTC +RE A +KV   +G  ++LK +R 
Sbjct: 1   MNESDSERYAGQLEELGYTPTEDPELADVILMNTCCVRETAEDKVLGKIGEFKHLK-TRN 59

Query: 96  KEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYS 155
           K   DL++ V GC+AQ   + + +R+P +++V+G    ++L +L++     K        
Sbjct: 60  K---DLILAVTGCMAQEWQDRLFKRAPHLDLVIGTHNIHKLIDLIKDKEGQKESHMLATE 116

Query: 156 VEDK-FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEA 214
           +ED  F  +        R +   A++ I  GC+KFCT+C+VPY RG E+SR L ++++E 
Sbjct: 117 MEDNIFHAVPT-----KRFQKFFAWVPIMNGCNKFCTYCIVPYVRGREVSRPLEEIIEEI 171

Query: 215 RKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT-FSDLLYSLSEIKGLVRLRYTTSHPRDM 273
           R L   G  EITLLGQNVN++   GLD +  T FS LLY++ +I G+ R+RY TSHP+DM
Sbjct: 172 RNLAKEGYKEITLLGQNVNSY---GLDFKDGTDFSALLYAIEDIDGIERVRYMTSHPKDM 228

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
           +  +I A      ++ ++HLPVQSGS  +LK MNR +T   Y +++  IR   P   +++
Sbjct: 229 TFTMIDAIAQCKKVVSHIHLPVQSGSTELLKRMNRGYTTEHYEELVSYIREKMPQAVLTT 288

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLC 393
           D IVGFPGET+  F+ T+DL+ ++ Y  A++F YSPR GTP + M  Q+ ++ K+ RL  
Sbjct: 289 DIIVGFPGETEAMFQETLDLLRRVRYDMAYTFIYSPRTGTPAATMDNQIPQDEKSRRLKR 348

Query: 394 LQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVL-NSKNHNIGDII 451
           L     E  +++N    G+  EV++E   K ++    GR+   + ++  N     +GD I
Sbjct: 349 LADVQNEISLAYNVEMEGKDYEVIVEGPTKNDENHWFGRTRGNKMIIWENDGTSAVGDTI 408

Query: 452 KVRITDVKISTLYGELV 468
           +V +   +   L G ++
Sbjct: 409 RVHVDKGQTWVLKGHVL 425


>gi|282854035|ref|ZP_06263372.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes
           J139]
 gi|282583488|gb|EFB88868.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes
           J139]
 gi|314981113|gb|EFT25207.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes
           HL110PA3]
 gi|315091939|gb|EFT63915.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes
           HL110PA4]
 gi|315093305|gb|EFT65281.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes
           HL060PA1]
 gi|315103440|gb|EFT75416.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes
           HL050PA2]
 gi|327327604|gb|EGE69380.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes
           HL103PA1]
          Length = 492

 Score =  272 bits (696), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 150/399 (37%), Positives = 234/399 (58%), Gaps = 17/399 (4%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGY---ERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           + V +YGCQMNV+DS R+  +    GY    R +++  AD++V NTC +RE A  ++Y  
Sbjct: 14  YRVVTYGCQMNVHDSERIAGLLEEAGYVPDPRTDTLAPADVVVFNTCAVRENADNRLYGT 73

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LG +  +K++       + + V GC+AQ + + ++ R+P V+VV G      LP LL+RA
Sbjct: 74  LGHMAAVKSAHPG----MQLAVGGCMAQKDKDTVVARAPWVDVVFGTHNVGSLPVLLKRA 129

Query: 144 RFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           R      V+ + S+      L        R    +A+++I  GC+  CTFC+VP  RG E
Sbjct: 130 RHNATAQVEIEESLVTFPSNLPA-----RRDSAYSAWVSISVGCNNTCTFCIVPQLRGKE 184

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLV 261
             R   +++ E R L+D GV EITLLGQNVN++   G+  G++  F+ LL +   I GL 
Sbjct: 185 TDRRPGEILSEIRALVDEGVQEITLLGQNVNSY---GVQFGDRGAFAKLLRACGNIDGLE 241

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+T+ HP   +D +I+A  +   +MP LH+P+QSGSD +L+ M R + + ++  I+DR
Sbjct: 242 RVRFTSPHPAAFTDDVIEAMAETPNVMPSLHMPLQSGSDEVLRRMRRSYRSTKFLGILDR 301

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R   P  AI++D IVGFPGETD DF  TM +V++  ++ AF+F+YS R  TP   M +Q
Sbjct: 302 VREAIPHAAITTDIIVGFPGETDKDFAETMRIVEESRFSAAFTFQYSIRPNTPAGVMEDQ 361

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
           V + V  ER   L + + +     N A +G+ +EV+  +
Sbjct: 362 VPKPVVQERYEQLVELVDDIAWQENKAQIGRAVEVMFAQ 400


>gi|189218731|ref|YP_001939372.1| 2-methylthioadenine synthetase [Methylacidiphilum infernorum V4]
 gi|229890614|sp|B3E0M0|MIAB_METI4 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|189185589|gb|ACD82774.1| 2-methylthioadenine synthetase [Methylacidiphilum infernorum V4]
          Length = 467

 Score =  272 bits (696), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 152/444 (34%), Positives = 255/444 (57%), Gaps = 13/444 (2%)

Query: 28  FVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRI 87
           F+K++GCQMNV DS ++   F  +GY+  +S   AD+I++NTC +R  A EK    L  +
Sbjct: 5   FIKTFGCQMNVRDSEQVLQDFIERGYQIASSEKWADIILINTCSVRAMAEEKAIDKLASL 64

Query: 88  RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147
           +  K    K+  +L++ + GC+AQ  G EI  +   V++V+G Q ++++ E+ +      
Sbjct: 65  KTAK----KKNPNLVLGIIGCMAQNRGREIAEKYRFVDLVLGTQKFHKVAEIADNLLKNP 120

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
               +   +  +    + ++   + K    A+++I +GC   C+FC+VP TRG E SR +
Sbjct: 121 DRSSSYVDLSKEEAAHNAINKHLSTKAQPIAYVSIMQGCSMHCSFCIVPTTRGEERSRPI 180

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG--EKCTFSDLLYSLSEIKGLVRLRY 265
            ++ +E ++L +  V EI LLGQ VN +  K       K  F  LL  LS I+ + R+R+
Sbjct: 181 DEIFEEVKRLAETSVKEIVLLGQIVNRYGAKEFPWVKGKSPFVQLLEKLSTIEEIKRIRF 240

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
           T+ HP    + LI A  D+  L  ++HLPVQSGSD+ILK+M R ++  ++  ++D++R  
Sbjct: 241 TSPHPLGFKEDLIAALRDIPQLCEHVHLPVQSGSDKILKAMRRGYSRSKFLSLVDKLRKA 300

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P +A+S+D IVG+PGET++DF+ T  L++++ +  AF F+YS R GT  +++ +Q+ E 
Sbjct: 301 IPQLALSTDIIVGYPGETEEDFQQTCSLLNEVRFDNAFIFRYSAREGTTAASLGDQLSEE 360

Query: 386 VKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLVGRSPWLQSVVLN 441
           VK E   RLL +Q K+  ++       VGQ++E+L+E   K+   K  GR+     V++ 
Sbjct: 361 VKFERNYRLLEIQNKITMEKA---QKWVGQVVEILVEGESKKNASKFQGRTRTNHLVIIP 417

Query: 442 SKNHNIGDIIKVRITDVKISTLYG 465
                 G+ + VRI +    T YG
Sbjct: 418 KNERWRGEFLPVRIVETTGHTFYG 441


>gi|314923002|gb|EFS86833.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes
           HL001PA1]
          Length = 492

 Score =  272 bits (696), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 150/399 (37%), Positives = 234/399 (58%), Gaps = 17/399 (4%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGY---ERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           + V +YGCQMNV+DS R+  +    GY    R +++  AD++V NTC +RE A  ++Y  
Sbjct: 14  YRVVTYGCQMNVHDSERIAGLLEEAGYVPDPRTDTLAPADVVVFNTCAVRENADNRLYGT 73

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LG +  +K++       + + V GC+AQ + + ++ R+P V+VV G      LP LL+RA
Sbjct: 74  LGHMAAVKSAHPG----MQLAVGGCMAQKDKDTVVARAPWVDVVFGTHNVGSLPVLLKRA 129

Query: 144 RFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           R      V+ + S+      L        R    +A+++I  GC+  CTFC+VP  RG E
Sbjct: 130 RHNATAQVEIEESLVTFPSNLPA-----RRDSAYSAWVSISVGCNNTCTFCIVPQLRGKE 184

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLV 261
             R   +++ E R L+D GV EITLLGQNVN++   G+  G++  F+ LL +   I GL 
Sbjct: 185 TDRRPGEILSEIRALVDEGVQEITLLGQNVNSY---GVQFGDRGAFAKLLRACGNIDGLE 241

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+T+ HP   +D +I+A  +   +MP LH+P+QSGSD +L+ M R + + ++  I+DR
Sbjct: 242 RVRFTSPHPAAFTDDVIEAMAETPNVMPSLHMPLQSGSDEVLRRMRRSYRSTKFLGILDR 301

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R   P  AI++D IVGFPGETD DF  TM +V++  ++ AF+F+YS R  TP   M +Q
Sbjct: 302 VREAIPHAAITTDIIVGFPGETDKDFAETMRIVEESRFSAAFTFQYSIRPNTPAGVMEDQ 361

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
           V + V  ER   L + + +     N A +G+ +EV+  +
Sbjct: 362 VPKPVVQERYEQLVELVDDIAWQENKAQIGRAVEVMFAQ 400


>gi|224003997|ref|XP_002291670.1| hypothetical protein THAPSDRAFT_41246 [Thalassiosira pseudonana
           CCMP1335]
 gi|220973446|gb|EED91777.1| hypothetical protein THAPSDRAFT_41246 [Thalassiosira pseudonana
           CCMP1335]
          Length = 453

 Score =  272 bits (696), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 162/457 (35%), Positives = 264/457 (57%), Gaps = 30/457 (6%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDA----------DLIVLNTCHIREKA 76
           + + + GCQMNV DS R+  M   +G   + S+DD           D+++LNTC IR+ A
Sbjct: 11  YKILTAGCQMNVADSERI--MGVLEGELGLTSLDDTEENTNKQTTPDILLLNTCTIRDHA 68

Query: 77  AEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL 136
            +KVY  LG   +LK    ++G  L +VVAGCVAQ EGE +LRR P +++V+GPQ    L
Sbjct: 69  EQKVYDALGPYASLK----RDGKPLAIVVAGCVAQQEGEALLRRFPEIDLVLGPQYIPWL 124

Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
            +LL     G ++  T+  + +    +        R   V A++ +  GC++ CT+CVVP
Sbjct: 125 GDLLVEVGKGSQLCMTESMIWNWMVPIK-------RGHSVRAWVNVIYGCNEHCTYCVVP 177

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256
             RG+E SRS+  ++ E  +L  +G  E+TLLGQN++A+ G+ +   + TF+DLL+ L++
Sbjct: 178 SVRGVEQSRSMEAILQECVQLAASGYKEVTLLGQNIDAY-GRDMTPRR-TFADLLHYLND 235

Query: 257 ---IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
                 + R+RY TSHPR  SD +I A  DLD +    H+P Q+G D++L+ M R +T  
Sbjct: 236 NLPPDTISRIRYVTSHPRYFSDRVIDAVADLDKVCECFHMPFQAGDDQVLRDMRRGYTYA 295

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
            Y  II +IR+  PD +I  D IVGFP ETD+ F+ T+DL++++ +    +F YSPR  T
Sbjct: 296 SYMNIIKKIRAKAPDASICGDIIVGFPNETDEAFQRTLDLMEEVKFDNLNTFAYSPRPNT 355

Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLVGRS 432
             +N   Q+  +V++ERL  +Q    +  +  +    G+++EVL+E    + G +++GR+
Sbjct: 356 EAANWENQIPPDVQSERLQRVQALAAKHALERSQRYEGRVVEVLVEDRNPKNGNEVMGRT 415

Query: 433 PWLQSVVLNSKNHNI-GDIIKVRITDVKISTLYGELV 468
              + V        + G+++ V++ + +  +L G+L 
Sbjct: 416 RQGRQVFFEGSVDELKGELVMVKVVEARTWSLVGKLA 452


>gi|315604451|ref|ZP_07879517.1| tRNA-I(6)A37 thiotransferase [Actinomyces sp. oral taxon 180 str.
           F0310]
 gi|315314157|gb|EFU62208.1| tRNA-I(6)A37 thiotransferase [Actinomyces sp. oral taxon 180 str.
           F0310]
          Length = 512

 Score =  272 bits (696), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 160/472 (33%), Positives = 265/472 (56%), Gaps = 43/472 (9%)

Query: 13  MVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDA---------- 62
           M +      ++P+ + V++ GCQMN +DS RM  +    G   V  + +A          
Sbjct: 1   MNTMTPQDAVLPRTYAVRTLGCQMNEHDSERMAGLLEQAGLIPVEKVPEAAARATDAGDM 60

Query: 63  --DLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRR 120
             D++V+NTC +RE AA +++  LG++  +K  R      + + V GC+AQ   + I+ +
Sbjct: 61  GADVVVINTCSVRENAATRLFGNLGQLAAVKRKRPG----MQIAVGGCLAQQMRDGIVEK 116

Query: 121 SPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGY--NRKRGVTA 178
           +P V+ V G      LP LL RA       +++ +VE + E L +       +R+    A
Sbjct: 117 APWVDAVFGTHNIDVLPALLRRAEH-----NSEAAVEIE-ESLKVFPSTLPTHRESVYAA 170

Query: 179 FLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK 238
           +++I  GC+  CTFC+VP  RG E  R    ++ E   +   G  E+TLLGQNVN++ G 
Sbjct: 171 WVSISVGCNNTCTFCIVPRLRGKERDRRPGDILAEVEAVASQGAIEVTLLGQNVNSY-GV 229

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
           G  GE+  F+DLL ++  + G+ R+R+T+ HP   +D +I+A  +   +MP LH+P+QSG
Sbjct: 230 GF-GERGAFADLLRAVGRVDGIERVRFTSPHPAAFTDDVIEAMANTPTVMPSLHMPLQSG 288

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           SD +L+ M R +    +  I++R+R+  PD AI++D IVGFPGET++DF+AT+D+V++  
Sbjct: 289 SDAVLRQMRRSYRRERFMGILERVRAAIPDAAITTDIIVGFPGETEEDFQATLDVVEQAR 348

Query: 359 YAQAFSFKYSPRLGTPGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIE 415
           +  AF+F YSPR GTP ++  ++V ++V  E   RL+ LQ+ +  Q    N A VG  +E
Sbjct: 349 FTSAFTFLYSPRPGTPAADREDRVPDDVALERYQRLVALQESICAQD---NAALVGTDVE 405

Query: 416 VLIEK-HGKEKG---KLVGRSP-------WLQSVVLNSKNHNIGDIIKVRIT 456
           VL+    G++ G   ++ GR+         L + +   +    GD+I+  +T
Sbjct: 406 VLVSSGDGRKDGATHRISGRARDNRLVHVALPAGLAAGERPRPGDMIRATVT 457


>gi|229495400|ref|ZP_04389135.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Porphyromonas
           endodontalis ATCC 35406]
 gi|229317843|gb|EEN83741.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Porphyromonas
           endodontalis ATCC 35406]
          Length = 462

 Score =  272 bits (696), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 162/455 (35%), Positives = 259/455 (56%), Gaps = 25/455 (5%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++  +++YGCQMNV DS  +  +  + GYE  +S DDAD I++NTC +RE A +KV   L
Sbjct: 11  KKIHIETYGCQMNVADSEVVAAIMETAGYEMSDSPDDADAILINTCSVRENAEKKV---L 67

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R+ +    R K G   ++ V GC+A+   +E++ +    ++V GP  Y  LP L     
Sbjct: 68  NRLEHYNQLRRKHGKPSIIGVLGCMAERVRQELIEKHG-ADIVAGPDAYNDLPNLFAAVE 126

Query: 145 FGKRVVDTDYSVEDKF-ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            G++ ++ D S  + + + + +   G +    +T F++I  GCD +CT+C+VPYTRG E 
Sbjct: 127 TGEKAINIDLSRTETYRDVIPLKLAGLH----ITGFVSIMRGCDNYCTYCIVPYTRGHER 182

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL--DGEKCTFSDLLYSLSEIKGLV 261
           SR +  ++ E   +++ G  E+TLLGQNVN++R +    D     F+DLL +++E    +
Sbjct: 183 SREVESILREIDHMVELGYREVTLLGQNVNSYRREAATPDAPPFDFADLLQAVAERAPKM 242

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+T+ HP+DMSD  I        +   +HLPVQSGS+ ILK M R +T   Y   +DR
Sbjct: 243 RIRFTSPHPKDMSDKTIAVMARYPNICKQIHLPVQSGSNHILKQMKRGYTREWY---LDR 299

Query: 322 IRSVR---PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           +R++R   P+ +I +D   GF GE+++DF+ T+ L+ ++ +  AF FKYS R GT  +  
Sbjct: 300 VRAIREAMPECSIGTDMFCGFCGESEEDFQETLRLMREVAFDSAFMFKYSERPGTFAAKH 359

Query: 379 LE-QVDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSP 433
           L+  V E  K  RL   + LQ +L    ++ N   +G+  EVL+E   K  + +L GR+ 
Sbjct: 360 LQDDVPEETKIRRLNEMIALQNEL---SLASNKRDIGKQFEVLVEGTSKRSREELFGRTS 416

Query: 434 WLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
             + VV   +   IG  + V I D   +TL G+ V
Sbjct: 417 QNKVVVFPKEQARIGQFVVVEIHDATSATLLGKEV 451


>gi|305433013|ref|ZP_07402169.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Campylobacter coli JV20]
 gi|304443714|gb|EFM36371.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Campylobacter coli JV20]
          Length = 433

 Score =  272 bits (695), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 165/447 (36%), Positives = 247/447 (55%), Gaps = 20/447 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRM-EDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ F+++ GC MNV DS  M  ++     Y     + +ADLI++NTC +REK   K++S 
Sbjct: 4   KKLFIQTLGCAMNVRDSEHMIAELTQKDNYTLTEDIKEADLILINTCSVREKPVHKLFSE 63

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G    +K S  K G      V GC A   G EI RR+P V+ V+G +   ++ + +   
Sbjct: 64  VGGFEKVKKSGAKIG------VCGCTASHLGSEIFRRAPYVDFVLGARNISKITQAVNTP 117

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           +F    VD DY  E +F        G  R     +++ I  GCDK CT+C+VP+TRG EI
Sbjct: 118 KFMS--VDIDYD-ESEFA------FGDFRNSIYKSYINISIGCDKHCTYCIVPHTRGDEI 168

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE--KCTFSDLLYSLSEIKGLV 261
           S  L+ +  EA+K +D G  EI LLGQNVN + GK    E  K  FSDLL  LS I+GL 
Sbjct: 169 SIPLNIIYKEAQKAVDKGAKEIFLLGQNVNNY-GKRFRNEHKKMDFSDLLEELSTIEGLE 227

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+T+ HP  M D  ++       +   +H+P+QSGS +ILK+M R +T   Y     +
Sbjct: 228 RIRFTSPHPLHMDDKFLEVFAKNPKVCKSMHMPLQSGSSQILKAMKRGYTKEWYLDRALK 287

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R + P+++IS+D IV FPGE+D DF  TM++++K+ + Q FSFKYS R  T  + M  Q
Sbjct: 288 LRELCPNVSISTDIIVAFPGESDKDFEETMEVLEKVRFEQMFSFKYSKRPLTKAATMPNQ 347

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           +DE + + RL  LQ +  E           +  +VL E+  +    +VGR+     V + 
Sbjct: 348 IDEEIASNRLSTLQARHNEILDDIVKKQENKTFKVLFEEL-RAGNAIVGRTDNNFLVQVE 406

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                +G   +V+IT+ K   LYGE++
Sbjct: 407 GSEELLGTFKEVKITNAKRMVLYGEII 433


>gi|289642430|ref|ZP_06474576.1| RNA modification enzyme, MiaB family [Frankia symbiont of Datisca
           glomerata]
 gi|289507775|gb|EFD28728.1| RNA modification enzyme, MiaB family [Frankia symbiont of Datisca
           glomerata]
          Length = 469

 Score =  272 bits (695), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 166/435 (38%), Positives = 249/435 (57%), Gaps = 31/435 (7%)

Query: 36  MNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRI 95
           MNV+DS R+  M  + GY    +    D++V NTC +RE A  ++Y  LG++   K    
Sbjct: 1   MNVHDSERIAGMLEAAGYVPAATDVTPDVVVFNTCAVRENADNRLYGNLGQMYPAK---- 56

Query: 96  KEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYS 155
           K    + + V GC+AQ +   I  R+P V+VV G    +RLP LLERAR      +    
Sbjct: 57  KHHPGMQIAVGGCLAQKDRATITERAPWVDVVFGTHNLHRLPVLLERARH-----NAAAE 111

Query: 156 VEDKFERLSIVDGGYNRKRGV--TAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           VE   E L +       +R    +A+++I  GCD  CTFC+VP  RG E  R    V+ E
Sbjct: 112 VE-IVEALEVFPSALPSRRSTHHSAWVSISVGCDNTCTFCIVPSLRGREADRRPGGVLAE 170

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
              L+ +GV EITLLGQNVN++ G+ L G+   F+ LL++   I GL R+R+T+ HPRD 
Sbjct: 171 VEALVADGVIEITLLGQNVNSY-GRSL-GDPGAFAKLLHACGTIDGLERVRFTSPHPRDF 228

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
           +D +I+A      + P LH+P+QSGSD +L+ M R +    +  I++R+R+V P  AI++
Sbjct: 229 TDDVIEAMAATPNVCPQLHMPLQSGSDAVLRRMRRSYRQERFLGILERVRAVMPHAAITT 288

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV---KAER 390
           D IVGFPGET+ DF  T+ +V +  +A AF+F+YS R GTP + M  QVD      + ER
Sbjct: 289 DIIVGFPGETEADFADTLRVVREARFAGAFTFQYSARAGTPAAAMDGQVDPAAVRDRYER 348

Query: 391 LLCLQKKLREQQVSF--NDACVGQIIEVL-IEKHGKE---KGKLVGRSPWLQSVVLNSKN 444
           L+ +Q      ++S+  N A VGQ +EVL +E  G++    G+  GR+   + V L + +
Sbjct: 349 LVAVQ-----DEISWVGNRALVGQPVEVLVVEGEGRKDAATGRRSGRARDGRLVHLGAPS 403

Query: 445 HNI---GDIIKVRIT 456
             +   GD+++  +T
Sbjct: 404 AALIRPGDVVRTAVT 418


>gi|325661614|ref|ZP_08150238.1| hypothetical protein HMPREF0490_00972 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325472141|gb|EGC75355.1| hypothetical protein HMPREF0490_00972 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 491

 Score =  272 bits (695), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 163/437 (37%), Positives = 245/437 (56%), Gaps = 23/437 (5%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           ++GCQMN  DS ++  +    GY+   + +DAD ++ NTC +RE A  +VY  LG++  +
Sbjct: 61  TFGCQMNARDSEKLLGVLEQIGYQEETNEEDADFVIYNTCTVRENANMRVYGRLGQLNRV 120

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
           K    K+   +L+ + GC+ Q     E+I +    V+++ G    Y+  EL+      +R
Sbjct: 121 K----KQKPHMLIGLCGCMMQEPEVVEKIKKSYRFVDLIFGTHNIYKFAELIVTRLESQR 176

Query: 149 VV-----DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           +V     DTD  VED             RK    + + I  GC+ FC++C+VPY RG E 
Sbjct: 177 MVIDIWKDTDKIVEDL---------PSERKFSFKSGVNIMFGCNNFCSYCIVPYVRGRER 227

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR+   ++ E + L+ +GV E+ LLGQNVN++ GK L+    TF+ LL  + +I+GL R+
Sbjct: 228 SRNPEDIIREIQGLVADGVVEVMLLGQNVNSY-GKTLE-HPMTFAQLLTEIEKIEGLERI 285

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+ TSHP+D+SD LI+       +  +LHLPVQSGS  ILK MNRR+T  +Y +++ +I+
Sbjct: 286 RFMTSHPKDLSDELIEVMKHSKKICKHLHLPVQSGSTEILKKMNRRYTKEQYLELVRKIK 345

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              PDI++++D IVGFPGET++DF  TMD+V K+ Y  AF+F YS R GTP + M  QV 
Sbjct: 346 EAVPDISLTTDIIVGFPGETEEDFLETMDVVKKVRYDSAFTFIYSKRTGTPAAAMENQVP 405

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GRSPWLQSVVLNS 442
           E+V  +R   L K+++           G    VL+E        LV GR      V    
Sbjct: 406 EDVVKDRFDRLLKEVQSISAEVCSVHEGTTQSVLVEAVNDHDPALVTGRLSNNILVHFPG 465

Query: 443 KNHNIGDIIKVRITDVK 459
           +   IG I+ VR+   K
Sbjct: 466 EKELIGKIVSVRLDACK 482


>gi|295094832|emb|CBK83923.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Coprococcus sp. ART55/1]
          Length = 483

 Score =  272 bits (695), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 166/444 (37%), Positives = 252/444 (56%), Gaps = 16/444 (3%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           ++++GCQMNV DS ++  +    GY R  S + AD I+ NTC +RE A  KVY  LG ++
Sbjct: 51  IQTFGCQMNVRDSEKLAGILEQMGYVRTES-EHADFIIYNTCTVRENANRKVYGHLGLMK 109

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPEL-LERARF 145
           +LK    ++  ++ + + GC+ Q +     I +    V++V G    Y+L E+ + R   
Sbjct: 110 HLK----EKNPEMKIALCGCMMQEQHVVTTISKSYRFVDMVFGTHNVYKLAEIFVSRIES 165

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G  V+D     ++  E L  V     R+    + + I  GC+ FCT+C+VPY RG E SR
Sbjct: 166 GSMVIDIWKDAKEVVEDLPAV-----REFPFKSGVNIMFGCNNFCTYCIVPYVRGRERSR 220

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           +   ++ E  +L D+GV EI LLGQNVN++ GK L+    TF++LL  +  I+ + R+R+
Sbjct: 221 NPEDIIAECERLADDGVVEIMLLGQNVNSY-GKNLE-HPITFAELLRRVCAIEKIQRVRF 278

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
            TSHP+D+SD LI    +   +  +LHLPVQSGS +IL +MNRR+T   Y  ++DRIR+ 
Sbjct: 279 MTSHPKDLSDELIDVIAENQKICRHLHLPVQSGSTKILNAMNRRYTKESYLALVDRIRAK 338

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P+I++++D IVGFPGET++DF  TMD+V+K+ Y  AF+F YS R GTP + M     + 
Sbjct: 339 IPEISLTTDIIVGFPGETEEDFLETMDVVEKVQYDTAFTFIYSKRTGTPAAGMENGSTKE 398

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLNSKN 444
              +R   L ++++E       A  GQ   VL+E    K  G L GR      V      
Sbjct: 399 EIQDRYNRLLRRVQEISDVKTIAIKGQTQPVLVEGFDEKGDGLLTGRLSNNILVHFPGCA 458

Query: 445 HNIGDIIKVRITDVKISTLYGELV 468
             +G I+ V++ + K     GEL 
Sbjct: 459 EMVGKILNVKLVECKGFYYMGELA 482


>gi|313772146|gb|EFS38112.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes
           HL074PA1]
 gi|313810010|gb|EFS47731.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes
           HL083PA1]
 gi|313830338|gb|EFS68052.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes
           HL007PA1]
 gi|313833712|gb|EFS71426.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes
           HL056PA1]
 gi|314973343|gb|EFT17439.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes
           HL053PA1]
 gi|314976020|gb|EFT20115.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes
           HL045PA1]
 gi|314983958|gb|EFT28050.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes
           HL005PA1]
 gi|315096258|gb|EFT68234.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes
           HL038PA1]
 gi|327326170|gb|EGE67960.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes
           HL096PA2]
 gi|327445942|gb|EGE92596.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes
           HL043PA2]
 gi|327448079|gb|EGE94733.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes
           HL043PA1]
 gi|328760608|gb|EGF74175.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes
           HL099PA1]
          Length = 494

 Score =  272 bits (695), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 150/399 (37%), Positives = 234/399 (58%), Gaps = 17/399 (4%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGY---ERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           + V +YGCQMNV+DS R+  +    GY    R +++  AD++V NTC +RE A  ++Y  
Sbjct: 14  YRVVTYGCQMNVHDSERIAGLLEEAGYVPDPRTDTLAPADVVVFNTCAVRENADNRLYGT 73

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LG +  +K++       + + V GC+AQ + + ++ R+P V+VV G      LP LL+RA
Sbjct: 74  LGHMAAVKSAHPG----MQLAVGGCMAQKDKDTVVARAPWVDVVFGTHNVGSLPVLLKRA 129

Query: 144 RFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           R      V+ + S+      L        R    +A+++I  GC+  CTFC+VP  RG E
Sbjct: 130 RHNATAQVEIEESLVTFPSNLPA-----RRDSAYSAWVSISVGCNNTCTFCIVPQLRGKE 184

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLV 261
             R   +++ E R L++ GV EITLLGQNVN++   G+  G++  F+ LL +   I GL 
Sbjct: 185 TDRRPGEILSEIRALVNEGVQEITLLGQNVNSY---GVQFGDRGAFAKLLRACGNIDGLE 241

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+T+ HP   +D +I+A  +   +MP LH+P+QSGSD +L+ M R + + ++  I+DR
Sbjct: 242 RVRFTSPHPAAFTDDVIEAMAETPNVMPSLHMPLQSGSDEVLRRMRRSYRSTKFLGILDR 301

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R   P  AI++D IVGFPGETD DF  TM +V++  ++ AF+F+YS R  TP   M +Q
Sbjct: 302 VREAIPHAAITTDIIVGFPGETDKDFAETMRIVEESRFSAAFTFQYSIRPNTPAGVMKDQ 361

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
           V + V  ER   L + + +     N A VG+ +EV+  +
Sbjct: 362 VPKPVVQERYEQLVELVDDIAWQENKAQVGRAVEVMFAQ 400


>gi|327453856|gb|EGF00511.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes
           HL083PA2]
          Length = 494

 Score =  272 bits (695), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 150/399 (37%), Positives = 234/399 (58%), Gaps = 17/399 (4%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGY---ERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           + V +YGCQMNV+DS R+  +    GY    R +++  AD++V NTC +RE A  ++Y  
Sbjct: 14  YRVVTYGCQMNVHDSERIAGLLEEAGYVPDPRTDTLAPADVVVFNTCAVRENADNRLYGT 73

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LG +  +K++       + + V GC+AQ + + ++ R+P V+VV G      LP LL+RA
Sbjct: 74  LGHMAAVKSAHPG----MQLAVGGCMAQKDKDTVVARAPWVDVVFGTHNVGSLPVLLKRA 129

Query: 144 RFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           R      V+ + S+      L        R    +A+++I  GC+  CTFC+VP  RG E
Sbjct: 130 RHNATAQVEIEESLVTFPSNLPA-----RRDSAYSAWVSISVGCNNTCTFCIVPQLRGKE 184

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLV 261
             R   +++ E R L++ GV EITLLGQNVN++   G+  G++  F+ LL +   I GL 
Sbjct: 185 TDRRPGEILSEIRALVNEGVQEITLLGQNVNSY---GVQFGDRGAFAKLLRACGNIDGLE 241

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+T+ HP   +D +I+A  +   +MP LH+P+QSGSD +L+ M R + + ++  I+DR
Sbjct: 242 RVRFTSPHPAAFTDDVIEAMAETPNVMPSLHMPLQSGSDEVLRRMRRSYRSTKFLGILDR 301

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R   P  AI++D IVGFPGETD DF  TM +V++  ++ AF+F+YS R  TP   M +Q
Sbjct: 302 VREAIPHAAITTDIIVGFPGETDKDFAETMRIVEESRFSAAFTFQYSIRPNTPAGVMKDQ 361

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
           V + V  ER   L + + +     N A VG+ +EV+  +
Sbjct: 362 VPKPVVQERYEQLVELVDDIAWQENKAQVGRAVEVMFAQ 400


>gi|289449396|ref|YP_003475195.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Clostridiales genomosp.
           BVAB3 str. UPII9-5]
 gi|289183943|gb|ADC90368.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Clostridiales genomosp.
           BVAB3 str. UPII9-5]
          Length = 485

 Score =  271 bits (694), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 153/410 (37%), Positives = 236/410 (57%), Gaps = 18/410 (4%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           +F++++GCQ N  DS ++  +    GY    + + AD++++NTC +RE A+++ +  LG 
Sbjct: 31  YFIQTFGCQQNDNDSEKLAGLLQKMGYTPAANRESADIVLINTCSVRENASDRFFGNLGI 90

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           ++ LK    K    +L+   GC+ + E   E+I R  P V+V++ P   YR PELL R  
Sbjct: 91  LKPLK----KSNPGMLICTCGCMMKQEEVVEKIKRSYPFVDVLLAPSDLYRFPELLWRRL 146

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYN--RKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            G R V  D + +D      +V  G     +R   A  TI  GC+ +CT+C+VP+TRG E
Sbjct: 147 NGTRRV-YDITADD------VVAEGIPVLHERKYRALCTIMYGCNNYCTYCIVPFTRGRE 199

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR   +++ E ++L  +G  E+ LLGQNVN++ G+ L  +K +F++LL   +E  GL R
Sbjct: 200 RSRQPEEILRELQELAASGYTEVMLLGQNVNSY-GRDL-ADKMSFAELLALAAEHSGLPR 257

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +RY TSHP+D+S  LI        +  ++HLP+QSGSD +L+ MNR +    Y  I+D  
Sbjct: 258 IRYMTSHPKDLSPELIDVMAAYPNIERHIHLPLQSGSDAVLRKMNRHYNIARYMSIVDLA 317

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           +   PD++I++D IVGFPGET+ DF  T+ +V ++GY  AF+F+YSPR GTP +    QV
Sbjct: 318 KRKIPDLSITTDIIVGFPGETEADFAETLRIVGEVGYDSAFTFQYSPRPGTPAAKWTNQV 377

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGR 431
              V +ER   L     +  ++ N   + +  EVLIE       G   GR
Sbjct: 378 PAEVVSERFDRLVTLQNQNSLAANLRRLNRSGEVLIEGISDHNPGMFTGR 427


>gi|296274350|ref|YP_003656981.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Arcobacter nitrofigilis
           DSM 7299]
 gi|296098524|gb|ADG94474.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Arcobacter nitrofigilis
           DSM 7299]
          Length = 439

 Score =  271 bits (694), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 158/452 (34%), Positives = 263/452 (58%), Gaps = 29/452 (6%)

Query: 25  QRFFVKSYGCQMNVYDSLRM-EDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ F+++ GCQMN  DS  +  ++   + Y+  ++M+DADLI++NTC +REK  +K++S 
Sbjct: 7   KKLFIQTLGCQMNDTDSQHIIAELEKYKDYKTTDNMEDADLIIINTCSVREKPVQKLFSE 66

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G+     N++ K+G    + V GC A   G++I++R+P V+ VVG +   ++       
Sbjct: 67  IGQF----NAKKKDGAK--IGVCGCTASHLGKDIIKRAPYVDFVVGARNISKI------- 113

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAF----LTIQEGCDKFCTFCVVPYTR 199
              K ++D   +VE   E     D  Y   R  T+     + I  GCDK CT+C+VP TR
Sbjct: 114 ---KDIIDVKGAVEISIEN---DDSTYEFARSETSMYKTSVNISIGCDKECTYCIVPATR 167

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE-KCTFSDLLYSLSEIK 258
           G EIS     +V + +K +D G  E+ LLGQNVN++  +  D   K TF+ LL  +S+I+
Sbjct: 168 GDEISIPPEMIVQQIQKDVDKGAVEVMLLGQNVNSYGRRFSDKRAKTTFTKLLQEISKIE 227

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           GL R+R+T+ HP  M D  I+       +   +H+P+QSGS  ILK+M R +T   +   
Sbjct: 228 GLRRIRFTSPHPLHMDDEFIEEFSSNPKISKCIHMPLQSGSTSILKAMKRGYTKEWFLNR 287

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
            ++IR + P++ I++D IVGFPGET +DF  TMD+++K+ + Q F+FKYSPR  T    +
Sbjct: 288 AEKIRRLVPNVRITTDIIVGFPGETQEDFEDTMDVIEKVKFDQIFNFKYSPRPNTAALAL 347

Query: 379 LEQ-VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSP-WLQ 436
            +Q +D+ +   RL+ +    +E  V   ++ +G+ +E+L+E + K  G++ G +  W Q
Sbjct: 348 KDQEIDDEIAGARLIKVIDLHKEHLVEHMNSHIGKTVEILVE-NLKSDGEVCGFTDNWCQ 406

Query: 437 SVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            V +   +  +G  +KV+I D   + L GE++
Sbjct: 407 -VFVKGSDELLGKFVKVKINDASRTALKGEVI 437


>gi|315080658|gb|EFT52634.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes
           HL078PA1]
          Length = 494

 Score =  271 bits (694), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 150/399 (37%), Positives = 234/399 (58%), Gaps = 17/399 (4%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGY---ERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           + V +YGCQMNV+DS R+  +    GY    R +++  AD++V NTC +RE A  ++Y  
Sbjct: 14  YRVVTYGCQMNVHDSERIAGLLEEAGYVPDPRTDTLAPADVVVFNTCAVRENADNRLYGT 73

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LG +  +K++       + + V GC+AQ + + ++ R+P V+VV G      LP LL+RA
Sbjct: 74  LGHMAAVKSAHPG----MQLAVGGCMAQKDKDTVVARAPWVDVVFGTHNVGSLPVLLKRA 129

Query: 144 RFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           R      V+ + S+      L        R    +A+++I  GC+  CTFC+VP  RG E
Sbjct: 130 RHNATAQVEIEESLVTFPSNLPA-----RRDSAYSAWVSISVGCNNTCTFCIVPQLRGKE 184

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLV 261
             R   +++ E R L++ GV EITLLGQNVN++   G+  G++  F+ LL +   I GL 
Sbjct: 185 TDRRPGEILSEIRALVNEGVQEITLLGQNVNSY---GVQFGDRGAFAKLLRACGNIDGLE 241

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+T+ HP   +D +I+A  +   +MP LH+P+QSGSD +L+ M R + + ++  I+DR
Sbjct: 242 RVRFTSPHPAAFTDDVIEAMAETPNVMPSLHMPLQSGSDEVLRRMRRSYRSTKFLGILDR 301

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R   P  AI++D IVGFPGETD DF  TM +V++  ++ AF+F+YS R  TP   M +Q
Sbjct: 302 VREAIPHAAITTDIIVGFPGETDKDFAETMRIVEESRFSAAFTFQYSIRPNTPAGVMKDQ 361

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
           V + V  ER   L + + +     N A VG+ +EV+  +
Sbjct: 362 VPKPVVQERYEQLVELVDDIAWQENKAQVGRAVEVMFAQ 400


>gi|212550847|ref|YP_002309164.1| tRNA-i(6)A37 modification enzyme MiaB [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
 gi|229890446|sp|B6YRD1|MIAB_AZOPC RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|212549085|dbj|BAG83753.1| tRNA-i(6)A37 modification enzyme MiaB [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
          Length = 449

 Score =  271 bits (694), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 158/448 (35%), Positives = 267/448 (59%), Gaps = 20/448 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +R F+++YGCQMN+ DS  +  +    G+E   ++ +AD++++NTC +RE A +K++S L
Sbjct: 13  RRIFIETYGCQMNIADSEIVIAIVQMDGFEYTENILEADVVLINTCSVRENAEKKIFSRL 72

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
              ++LK  R      L++ V GC+A+   E ++++   V++VVGP +Y  LP L+    
Sbjct: 73  QYFQSLKKKR----NQLIIGVLGCMAKRIRETLIQQYH-VDLVVGPDSYMDLPHLIGTVE 127

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G + ++ + S  + ++   IV    +R + ++ F++I  GC+ FC++C+VPYTRG E S
Sbjct: 128 KGAKAININLSSTEVYK--GIVPLKLSRIK-ISGFISIIRGCNNFCSYCIVPYTRGRERS 184

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT-FSDLLYSLSEIKGLVRL 263
           R    +++E   L + G  E+ LLGQNVN++  K    E  T F  LL  ++     +R+
Sbjct: 185 RDPKSILNELHILKEQGYKEVILLGQNVNSYFYKN---ENITDFPHLLELVALNAPEMRI 241

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+TTSHP+DM D  ++     + +  ++HLP+QSGS +IL++MNR++T   Y Q +  IR
Sbjct: 242 RFTTSHPKDMGDETLRVIAKYNNICKHIHLPIQSGSSKILRAMNRKYTREWYLQRVTSIR 301

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML-EQV 382
            + P+++IS+D   GFP ET++D + T+ L+ ++G+  AF FKYS R  T  S  L + V
Sbjct: 302 KIVPEVSISTDLFCGFPSETEEDHKKTLSLMKEVGFDSAFMFKYSERPETYASRYLPDNV 361

Query: 383 DENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSV 438
            E VK  RL   + LQ K+   +   N   +G+ +E+LIE   K  + +L GR+   + V
Sbjct: 362 PEEVKIRRLNEIITLQLKISLMK---NKENIGKTMEILIEGFSKRSREQLFGRTLQNKIV 418

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGE 466
           +   KN++IG+ + V I     +TL+G+
Sbjct: 419 LFPRKNYHIGEKVLVEIKKASAATLFGD 446


>gi|50842500|ref|YP_055727.1| MiaB family protein [Propionibacterium acnes KPA171202]
 gi|81611809|sp|Q6A8Z7|MIAB_PROAC RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|50840102|gb|AAT82769.1| MiaB family protein [Propionibacterium acnes KPA171202]
 gi|313764472|gb|EFS35836.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes
           HL013PA1]
 gi|313812959|gb|EFS50673.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes
           HL025PA1]
 gi|313816010|gb|EFS53724.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes
           HL059PA1]
 gi|313827761|gb|EFS65475.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes
           HL063PA2]
 gi|314915464|gb|EFS79295.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes
           HL005PA4]
 gi|314918252|gb|EFS82083.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes
           HL050PA1]
 gi|314920065|gb|EFS83896.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes
           HL050PA3]
 gi|314932079|gb|EFS95910.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes
           HL067PA1]
 gi|314955740|gb|EFT00140.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes
           HL027PA1]
 gi|314958155|gb|EFT02258.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes
           HL002PA1]
 gi|314967816|gb|EFT11915.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes
           HL037PA1]
 gi|315098519|gb|EFT70495.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes
           HL059PA2]
 gi|315105399|gb|EFT77375.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes
           HL030PA1]
 gi|315108344|gb|EFT80320.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes
           HL030PA2]
 gi|328754531|gb|EGF68147.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes
           HL025PA2]
          Length = 494

 Score =  271 bits (694), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 150/399 (37%), Positives = 234/399 (58%), Gaps = 17/399 (4%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGY---ERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           + V +YGCQMNV+DS R+  +    GY    R +++  AD++V NTC +RE A  ++Y  
Sbjct: 14  YRVVTYGCQMNVHDSERIAGLLEEAGYVPDPRTDTLAPADVVVFNTCAVRENADNRLYGT 73

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LG +  +K++       + + V GC+AQ + + ++ R+P V+VV G      LP LL+RA
Sbjct: 74  LGHMAAVKSAHPG----MQLAVGGCMAQKDKDTVVARAPWVDVVFGTHNVGSLPVLLKRA 129

Query: 144 RFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           R      V+ + S+      L        R    +A+++I  GC+  CTFC+VP  RG E
Sbjct: 130 RHNATAQVEIEESLVTFPSNLPA-----RRDSAYSAWVSISVGCNNTCTFCIVPQLRGKE 184

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLV 261
             R   +++ E R L++ GV EITLLGQNVN++   G+  G++  F+ LL +   I GL 
Sbjct: 185 TDRRPGEILSEIRALVNEGVQEITLLGQNVNSY---GVQFGDRGAFAKLLRACGNIDGLE 241

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+T+ HP   +D +I+A  +   +MP LH+P+QSGSD +L+ M R + + ++  I+DR
Sbjct: 242 RVRFTSPHPAAFTDDVIEAMAETPNVMPSLHMPLQSGSDEVLRRMRRSYRSTKFLGILDR 301

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R   P  AI++D IVGFPGETD DF  TM +V++  ++ AF+F+YS R  TP   M +Q
Sbjct: 302 VREAIPHAAITTDIIVGFPGETDKDFAETMRIVEESRFSAAFTFQYSIRPNTPAGVMKDQ 361

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
           V + V  ER   L + + +     N A VG+ +EV+  +
Sbjct: 362 VPKPVVQERYEQLVELVDDIAWQENKAQVGRAVEVMFAQ 400


>gi|313792158|gb|EFS40259.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes
           HL110PA1]
 gi|313801889|gb|EFS43123.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes
           HL110PA2]
 gi|313838715|gb|EFS76429.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes
           HL086PA1]
 gi|314962816|gb|EFT06916.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes
           HL082PA1]
 gi|315078033|gb|EFT50084.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes
           HL053PA2]
 gi|327453124|gb|EGE99778.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes
           HL092PA1]
          Length = 494

 Score =  271 bits (694), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 150/399 (37%), Positives = 234/399 (58%), Gaps = 17/399 (4%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGY---ERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           + V +YGCQMNV+DS R+  +    GY    R +++  AD++V NTC +RE A  ++Y  
Sbjct: 14  YRVVTYGCQMNVHDSERIAGLLEEAGYVPDPRTDTLAPADVVVFNTCAVRENADNRLYGT 73

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LG +  +K++       + + V GC+AQ + + ++ R+P V+VV G      LP LL+RA
Sbjct: 74  LGHMAAVKSAHPG----MQLAVGGCMAQKDKDTVVARAPWVDVVFGTHNVGSLPVLLKRA 129

Query: 144 RFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           R      V+ + S+      L        R    +A+++I  GC+  CTFC+VP  RG E
Sbjct: 130 RHNATAQVEIEESLVTFPSNLPA-----RRDSAYSAWVSISVGCNNTCTFCIVPQLRGKE 184

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLV 261
             R   +++ E R L++ GV EITLLGQNVN++   G+  G++  F+ LL +   I GL 
Sbjct: 185 TDRRPGEILSEIRALVNEGVQEITLLGQNVNSY---GVQFGDRGAFAKLLRACGNIDGLE 241

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+T+ HP   +D +I+A  +   +MP LH+P+QSGSD +L+ M R + + ++  I+DR
Sbjct: 242 RVRFTSPHPAAFTDDVIEAMAETPNVMPSLHMPLQSGSDEVLRRMRRSYRSTKFLGILDR 301

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R   P  AI++D IVGFPGETD DF  TM +V++  ++ AF+F+YS R  TP   M +Q
Sbjct: 302 VREAIPHAAITTDIIVGFPGETDKDFAETMRIVEESRFSAAFTFQYSIRPNTPAGVMKDQ 361

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
           V + V  ER   L + + +     N A VG+ +EV+  +
Sbjct: 362 VPKPVVQERYEQLVELVDDIAWQENKAQVGRAVEVMFAQ 400


>gi|255530165|ref|YP_003090537.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Pedobacter
           heparinus DSM 2366]
 gi|255343149|gb|ACU02475.1| RNA modification enzyme, MiaB family [Pedobacter heparinus DSM
           2366]
          Length = 485

 Score =  271 bits (694), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 168/456 (36%), Positives = 254/456 (55%), Gaps = 18/456 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ +++SYGCQMN  DS  +  +   QG+E      +AD++ +NTC IRE A ++V + L
Sbjct: 31  RKLYIESYGCQMNFADSEIVASILLDQGFETTGDYKEADVVFINTCSIRENAEQRVRNRL 90

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            +    K    K    L+V V GC+A+    + L    +V+VVVGP  Y  LP+LL    
Sbjct: 91  SQFGAEKRRNPK----LIVGVLGCMAERLKSKFLEEEKLVDVVVGPDAYRELPQLLNEVE 146

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G + ++   S E+ +  +S V    N   G+TAF++I  GCD  C+FCVVP+TRG E S
Sbjct: 147 SGHKAINVLLSREETYADISPVRLNGN---GITAFISIMRGCDNMCSFCVVPFTRGRERS 203

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNA--WRGKGLDGEK------CTFSDLLYSLSE 256
           R    ++ EA+ L D G  E+TLLGQNV++  W+G   D  +        F+ LL  ++ 
Sbjct: 204 RDPHSILAEAQDLFDRGYKEVTLLGQNVDSYKWKGAATDENREAQEIEVNFAQLLEKVAL 263

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           I   +R+R++TSHP+D++D ++      + +  Y+HLPVQSGS R+L+ MNR +T   Y 
Sbjct: 264 ISPELRVRFSTSHPKDITDEVLYTIAKYENICNYIHLPVQSGSTRVLELMNRTYTREWYI 323

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
             ID IR + PD AISSD I GF  ET+++ + T+ ++D +GY  AF+F YS R GT  +
Sbjct: 324 NRIDAIRQIIPDCAISSDIIAGFCTETEEEHQETLSIMDYVGYDFAFTFSYSERPGTLAA 383

Query: 377 NMLE-QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPW 434
             LE  V E VK  RL  +  K +E  +      VG+ +++L+E   K+  +   GR+  
Sbjct: 384 RKLEDDVPEEVKKRRLAEILAKQQETSLFRLQQFVGKTVKILVEGTSKKSDRDFCGRNDQ 443

Query: 435 LQSVVL-NSKNHNIGDIIKVRITDVKISTLYGELVV 469
              VV   +     G  + V I     +TL G +VV
Sbjct: 444 NAMVVFPATAGIKAGQYVNVHIDRCTSATLLGTVVV 479


>gi|313807502|gb|EFS45989.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes
           HL087PA2]
 gi|313818544|gb|EFS56258.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes
           HL046PA2]
 gi|313820311|gb|EFS58025.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes
           HL036PA1]
 gi|313822882|gb|EFS60596.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes
           HL036PA2]
 gi|313825186|gb|EFS62900.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes
           HL063PA1]
 gi|314925198|gb|EFS89029.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes
           HL036PA3]
 gi|314960019|gb|EFT04121.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes
           HL002PA2]
 gi|314978441|gb|EFT22535.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes
           HL072PA2]
 gi|314988142|gb|EFT32233.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes
           HL005PA2]
 gi|314989946|gb|EFT34037.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes
           HL005PA3]
 gi|315084330|gb|EFT56306.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes
           HL027PA2]
 gi|315085672|gb|EFT57648.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes
           HL002PA3]
 gi|315088906|gb|EFT60882.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes
           HL072PA1]
 gi|327331955|gb|EGE73692.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes
           HL096PA3]
 gi|327443156|gb|EGE89810.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes
           HL013PA2]
 gi|328753487|gb|EGF67103.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes
           HL020PA1]
 gi|332675417|gb|AEE72233.1| (dimethylallyl)adenosine tRNA methylthiotransferase MiaB
           [Propionibacterium acnes 266]
          Length = 494

 Score =  271 bits (694), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 150/399 (37%), Positives = 234/399 (58%), Gaps = 17/399 (4%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGY---ERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           + V +YGCQMNV+DS R+  +    GY    R +++  AD++V NTC +RE A  ++Y  
Sbjct: 14  YRVVTYGCQMNVHDSERIAGLLEEAGYVPDPRTDTLAPADVVVFNTCAVRENADNRLYGT 73

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LG +  +K++       + + V GC+AQ + + ++ R+P V+VV G      LP LL+RA
Sbjct: 74  LGHMAAVKSAHPG----MQLAVGGCMAQKDKDTVVARAPWVDVVFGTHNVGSLPVLLKRA 129

Query: 144 RFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           R      V+ + S+      L        R    +A+++I  GC+  CTFC+VP  RG E
Sbjct: 130 RHNATAQVEIEESLVTFPSNLPA-----RRDSAYSAWVSISVGCNNTCTFCIVPQLRGKE 184

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLV 261
             R   +++ E R L++ GV EITLLGQNVN++   G+  G++  F+ LL +   I GL 
Sbjct: 185 TDRRPGEILSEIRALVNEGVQEITLLGQNVNSY---GVQFGDRGAFAKLLRACGNIDGLE 241

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+T+ HP   +D +I+A  +   +MP LH+P+QSGSD +L+ M R + + ++  I+DR
Sbjct: 242 RVRFTSPHPAAFTDDVIEAMAETPNVMPSLHMPLQSGSDEVLRRMRRSYRSTKFLGILDR 301

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R   P  AI++D IVGFPGETD DF  TM +V++  ++ AF+F+YS R  TP   M +Q
Sbjct: 302 VREAIPHAAITTDIIVGFPGETDKDFAETMRIVEESRFSAAFTFQYSIRPNTPAGVMKDQ 361

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
           V + V  ER   L + + +     N A VG+ +EV+  +
Sbjct: 362 VPKPVVQERYEQLVELVDDIAWQENKAQVGRAVEVMFAQ 400


>gi|327330240|gb|EGE71989.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes
           HL097PA1]
          Length = 494

 Score =  271 bits (693), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 150/399 (37%), Positives = 234/399 (58%), Gaps = 17/399 (4%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGY---ERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           + V +YGCQMNV+DS R+  +    GY    R +++  AD++V NTC +RE A  ++Y  
Sbjct: 14  YRVVTYGCQMNVHDSERIAGLLEEAGYVPDPRTDTLAPADVVVFNTCAVRESADNRLYGT 73

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LG +  +K++       + + V GC+AQ + + ++ R+P V+VV G      LP LL+RA
Sbjct: 74  LGHMAAVKSAHPG----MQLAVGGCMAQKDKDTVVARAPWVDVVFGTHNVGSLPVLLKRA 129

Query: 144 RFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           R      V+ + S+      L        R    +A+++I  GC+  CTFC+VP  RG E
Sbjct: 130 RHNATAQVEIEESLVTFPSNLPA-----RRDSAYSAWVSISVGCNNTCTFCIVPQLRGKE 184

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLV 261
             R   +++ E R L++ GV EITLLGQNVN++   G+  G++  F+ LL +   I GL 
Sbjct: 185 TDRRPGEILSEIRALVNEGVQEITLLGQNVNSY---GVQFGDRGAFAKLLRACGNIDGLE 241

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+T+ HP   +D +I+A  +   +MP LH+P+QSGSD +L+ M R + + ++  I+DR
Sbjct: 242 RVRFTSPHPAAFTDDVIEAMAETPNVMPSLHMPLQSGSDEVLRRMRRSYRSTKFLGILDR 301

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R   P  AI++D IVGFPGETD DF  TM +V++  ++ AF+F+YS R  TP   M +Q
Sbjct: 302 VREAIPHAAITTDIIVGFPGETDKDFAETMRIVEESRFSAAFTFQYSIRPNTPAGVMKDQ 361

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
           V + V  ER   L + + +     N A VG+ +EV+  +
Sbjct: 362 VPKPVVQERYEQLVELVDDIAWQENKAQVGRAVEVMFAQ 400


>gi|289427275|ref|ZP_06428991.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes
           J165]
 gi|289159744|gb|EFD07932.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes
           J165]
          Length = 497

 Score =  271 bits (693), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 150/399 (37%), Positives = 234/399 (58%), Gaps = 17/399 (4%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGY---ERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           + V +YGCQMNV+DS R+  +    GY    R +++  AD++V NTC +RE A  ++Y  
Sbjct: 17  YRVVTYGCQMNVHDSERIAGLLEEAGYVPDPRTDTLAPADVVVFNTCAVRENADNRLYGT 76

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LG +  +K++       + + V GC+AQ + + ++ R+P V+VV G      LP LL+RA
Sbjct: 77  LGHMAAVKSAHPG----MQLAVGGCMAQKDKDTVVARAPWVDVVFGTHNVGSLPVLLKRA 132

Query: 144 RFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           R      V+ + S+      L        R    +A+++I  GC+  CTFC+VP  RG E
Sbjct: 133 RHNATAQVEIEESLVTFPSNLPA-----RRDSAYSAWVSISVGCNNTCTFCIVPQLRGKE 187

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLV 261
             R   +++ E R L++ GV EITLLGQNVN++   G+  G++  F+ LL +   I GL 
Sbjct: 188 TDRRPGEILSEIRALVNEGVQEITLLGQNVNSY---GVQFGDRGAFAKLLRACGNIDGLE 244

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+T+ HP   +D +I+A  +   +MP LH+P+QSGSD +L+ M R + + ++  I+DR
Sbjct: 245 RVRFTSPHPAAFTDDVIEAMAETPNVMPSLHMPLQSGSDEVLRRMRRSYRSTKFLGILDR 304

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R   P  AI++D IVGFPGETD DF  TM +V++  ++ AF+F+YS R  TP   M +Q
Sbjct: 305 VREAIPHAAITTDIIVGFPGETDKDFAETMRIVEESRFSAAFTFQYSIRPNTPAGVMKDQ 364

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
           V + V  ER   L + + +     N A VG+ +EV+  +
Sbjct: 365 VPKPVVQERYEQLVELVDDIAWQENKAQVGRAVEVMFAQ 403


>gi|295130577|ref|YP_003581240.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes
           SK137]
 gi|291375467|gb|ADD99321.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes
           SK137]
          Length = 497

 Score =  271 bits (693), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 150/399 (37%), Positives = 234/399 (58%), Gaps = 17/399 (4%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGY---ERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           + V +YGCQMNV+DS R+  +    GY    R +++  AD++V NTC +RE A  ++Y  
Sbjct: 17  YRVVTYGCQMNVHDSERIAGLLEEAGYVPDPRTDTLAPADVVVFNTCAVRENADNRLYGT 76

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LG +  +K++       + + V GC+AQ + + ++ R+P V+VV G      LP LL+RA
Sbjct: 77  LGHMAAVKSAHPG----MQLAVGGCMAQKDKDTVVARAPWVDVVFGTHNVGSLPVLLKRA 132

Query: 144 RFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           R      V+ + S+      L        R    +A+++I  GC+  CTFC+VP  RG E
Sbjct: 133 RHNATAQVEIEESLVTFPSNLPA-----RRDSAYSAWVSISVGCNNTCTFCIVPQLRGKE 187

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLV 261
             R   +++ E R L++ GV EITLLGQNVN++   G+  G++  F+ LL +   I GL 
Sbjct: 188 TDRRPGEILSEIRALVNEGVQEITLLGQNVNSY---GVQFGDRGAFAKLLRACGNIDGLE 244

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+T+ HP   +D +I+A  +   +MP LH+P+QSGSD +L+ M R + + ++  I+DR
Sbjct: 245 RVRFTSPHPAAFTDDVIEAMAETPNVMPSLHMPLQSGSDEVLRRMRRSYRSTKFLGILDR 304

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R   P  AI++D IVGFPGETD DF  TM +V++  ++ AF+F+YS R  TP   M +Q
Sbjct: 305 VREAIPHAAITTDIIVGFPGETDKDFAETMRIVEESRFSAAFTFQYSIRPNTPAGVMKDQ 364

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
           V + V  ER   L + + +     N A VG+ +EV+  +
Sbjct: 365 VPKPVVQERYEQLVELVDDIAWQENKAQVGRAVEVMFAQ 403


>gi|289425065|ref|ZP_06426842.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes
           SK187]
 gi|289154043|gb|EFD02731.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes
           SK187]
          Length = 497

 Score =  271 bits (693), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 150/399 (37%), Positives = 234/399 (58%), Gaps = 17/399 (4%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGY---ERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           + V +YGCQMNV+DS R+  +    GY    R +++  AD++V NTC +RE A  ++Y  
Sbjct: 17  YRVVTYGCQMNVHDSERIAGLLEEAGYVPDPRTDTLAPADVVVFNTCAVRENADNRLYGT 76

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LG +  +K++       + + V GC+AQ + + ++ R+P V+VV G      LP LL+RA
Sbjct: 77  LGHMAAVKSAHPG----MQLAVGGCMAQKDKDTVVARAPWVDVVFGTHNVGSLPVLLKRA 132

Query: 144 RFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           R      V+ + S+      L        R    +A+++I  GC+  CTFC+VP  RG E
Sbjct: 133 RHNATAQVEIEESLVTFPSNLPA-----RRDSAYSAWVSISVGCNNTCTFCIVPQLRGKE 187

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLV 261
             R   +++ E R L++ GV EITLLGQNVN++   G+  G++  F+ LL +   I GL 
Sbjct: 188 TDRRPGEILSEIRALVNEGVQEITLLGQNVNSY---GVQFGDRGAFAKLLRACGNIDGLE 244

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+T+ HP   +D +I+A  +   +MP LH+P+QSGSD +L+ M R + + ++  I+DR
Sbjct: 245 RVRFTSPHPAAFTDDVIEAMAETPNVMPSLHMPLQSGSDEVLRRMRRSYRSTKFLGILDR 304

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R   P  AI++D IVGFPGETD DF  TM +V++  ++ AF+F+YS R  TP   M +Q
Sbjct: 305 VREAIPHAAITTDIIVGFPGETDKDFAETMRIVEESRFSAAFTFQYSIRPNTPAGVMKDQ 364

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
           V + V  ER   L + + +     N A VG+ +EV+  +
Sbjct: 365 VPKPVVQERYEQLVELVDDIAWQENKAQVGRAVEVMFAQ 403


>gi|167765542|ref|ZP_02437606.1| hypothetical protein CLOSS21_00036 [Clostridium sp. SS2/1]
 gi|167712727|gb|EDS23306.1| hypothetical protein CLOSS21_00036 [Clostridium sp. SS2/1]
          Length = 497

 Score =  271 bits (693), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 158/449 (35%), Positives = 257/449 (57%), Gaps = 26/449 (5%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V ++GCQMN  DS ++  +  + GYE V + ++AD ++ NTC +RE A  K+Y  LG+++
Sbjct: 64  VTTFGCQMNEKDSEKLLGILETIGYEEVET-EEADFLIFNTCTVRENANTKLYGHLGQVK 122

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
            +K    +    +++ + GC+ Q E   E+I      V+++ G    ++L ELL +AR  
Sbjct: 123 KMK----ERNPQMMIGLCGCMMQEEHVIEKIRSSYKFVDIIFGTHNIFKLAELL-KARVD 177

Query: 147 KRVV------DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
            + +      DTD  VED            +RK      + I  GC+ FC++C+VPY RG
Sbjct: 178 SKGMIVDIWKDTDQIVEDL---------PSDRKFSFKCGVNIMYGCNNFCSYCIVPYVRG 228

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E SR    ++ E ++++  GV E+ LLGQNVN++ GK L+ E  +F++LL  + +++GL
Sbjct: 229 RERSRKPEDIIKEVKQVVSEGVKEVMLLGQNVNSY-GKTLE-EPMSFAELLREVEKVEGL 286

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+ T HP+D+SD LI+       +  ++HLP+QSGS R+LK MNR +T  +Y  +  
Sbjct: 287 ERIRFMTPHPKDLSDDLIEVMATSKKVCKHMHLPMQSGSSRLLKLMNRHYTKEQYVALAK 346

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           +I+   P ++ ++D IVGFPGET++DF+ T+D+V ++G+  A+++ YS R GTP ++M +
Sbjct: 347 KIQERIPGVSFTTDIIVGFPGETEEDFKETLDVVREVGFDSAYTYVYSKRSGTPAASMED 406

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVV 439
           QVD++V  +R   L   L+E         VG I  VLIE+    E+G L GR      V 
Sbjct: 407 QVDKDVIKDRFDRLLALLKETSAKNCKKKVGDIERVLIEEENTHEEGMLTGRLENNLLVH 466

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG +  V++ + K     GE +
Sbjct: 467 FKGCKEQIGTMADVKLVEEKGFYYMGEQI 495


>gi|167771421|ref|ZP_02443474.1| hypothetical protein ANACOL_02787 [Anaerotruncus colihominis DSM
           17241]
 gi|167666061|gb|EDS10191.1| hypothetical protein ANACOL_02787 [Anaerotruncus colihominis DSM
           17241]
          Length = 457

 Score =  271 bits (693), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 164/451 (36%), Positives = 249/451 (55%), Gaps = 21/451 (4%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P   +V S+GCQ N  D  ++  M    GY   ++ + ADL++ NTC +RE A ++V+  
Sbjct: 18  PPMAYVHSFGCQQNQSDGEKIAGMLAQMGYGFTDAPEQADLVIYNTCAVRENAEDRVFGN 77

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCV--AQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           +G +++ K  R      +L+ + GC+   QA  ++I +  P V++V G    + LPELL 
Sbjct: 78  VGALKSAKKRR----AGMLIGLCGCMMQQQAVADKIKKSYPYVDLVFGTHALHTLPELLY 133

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRG-VTAFLTIQEGCDKFCTFCVVPYTRG 200
           R   G+   +  +S E+   R  I++G   R+ G + A L +  GCD FCT+C+VPY RG
Sbjct: 134 RRLLGE---NRQFSTENA--RGEIIEGVPLRRSGSIKANLPVMYGCDNFCTYCIVPYVRG 188

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E SR+   V++EAR L+  G  E+ LLGQNVN++ GKGL  E   F+ LL  ++EI+  
Sbjct: 189 RERSRNPGDVLNEARALVGQGYRELLLLGQNVNSY-GKGLS-EPINFAALLRRVNEIEDD 246

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
             +R+ TSHP+D +  LI      + +  ++HLPVQSGSDRIL +MNR +T   Y ++ID
Sbjct: 247 FWIRFMTSHPKDCTHELIDTIAACNKVCRHIHLPVQSGSDRILAAMNRHYTVAHYLELID 306

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
             R+  P +  SSD IVGFPGET  DF  T++L+ ++ +   ++F YSPR GT  + M  
Sbjct: 307 YARARIPGVTFSSDIIVGFPGETRADFEQTLELIKRVRFNALYTFIYSPRPGTKAAGM-- 364

Query: 381 QVDENVKAERLLCLQKKLREQ---QVSFNDACVGQIIEVLIEKHGKE-KGKLVGRSPWLQ 436
             D    A++ L L++ L  +   +       VG  + VL E  G+   G L GR+    
Sbjct: 365 -EDPTPAADKSLWLRELLDAESDIRSGMQADAVGTTLRVLAEGEGRSGDGWLTGRTQGND 423

Query: 437 SVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
            V   +    IG  + V I   +   L+G L
Sbjct: 424 IVEFTAPRAMIGSFVDVTIERAQNWALFGRL 454


>gi|317498496|ref|ZP_07956790.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Lachnospiraceae bacterium
           5_1_63FAA]
 gi|291559009|emb|CBL37809.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [butyrate-producing
           bacterium SSC/2]
 gi|316894189|gb|EFV16377.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Lachnospiraceae bacterium
           5_1_63FAA]
          Length = 470

 Score =  271 bits (693), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 158/449 (35%), Positives = 257/449 (57%), Gaps = 26/449 (5%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V ++GCQMN  DS ++  +  + GYE V + ++AD ++ NTC +RE A  K+Y  LG+++
Sbjct: 37  VTTFGCQMNEKDSEKLLGILETIGYEEVET-EEADFLIFNTCTVRENANTKLYGHLGQVK 95

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
            +K    +    +++ + GC+ Q E   E+I      V+++ G    ++L ELL +AR  
Sbjct: 96  KMK----ERNPQMMIGLCGCMMQEEHVIEKIRSSYKFVDIIFGTHNIFKLAELL-KARVD 150

Query: 147 KRVV------DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
            + +      DTD  VED            +RK      + I  GC+ FC++C+VPY RG
Sbjct: 151 SKGMIVDIWKDTDQIVEDL---------PSDRKFSFKCGVNIMYGCNNFCSYCIVPYVRG 201

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E SR    ++ E ++++  GV E+ LLGQNVN++ GK L+ E  +F++LL  + +++GL
Sbjct: 202 RERSRKPEDIIKEVKQVVSEGVKEVMLLGQNVNSY-GKTLE-EPMSFAELLREVEKVEGL 259

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+ T HP+D+SD LI+       +  ++HLP+QSGS R+LK MNR +T  +Y  +  
Sbjct: 260 ERIRFMTPHPKDLSDDLIEVMATSKKVCKHMHLPMQSGSSRLLKLMNRHYTKEQYVALAK 319

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           +I+   P ++ ++D IVGFPGET++DF+ T+D+V ++G+  A+++ YS R GTP ++M +
Sbjct: 320 KIQERIPGVSFTTDIIVGFPGETEEDFKETLDVVREVGFDSAYTYVYSKRSGTPAASMED 379

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVV 439
           QVD++V  +R   L   L+E         VG I  VLIE+    E+G L GR      V 
Sbjct: 380 QVDKDVIKDRFDRLLALLKETSAKNCKKKVGDIERVLIEEENTHEEGMLTGRLENNLLVH 439

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG +  V++ + K     GE +
Sbjct: 440 FKGCKEQIGTMADVKLVEEKGFYYMGEQI 468


>gi|167745633|ref|ZP_02417760.1| hypothetical protein ANACAC_00325 [Anaerostipes caccae DSM 14662]
 gi|167654945|gb|EDR99074.1| hypothetical protein ANACAC_00325 [Anaerostipes caccae DSM 14662]
          Length = 470

 Score =  271 bits (693), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 164/453 (36%), Positives = 258/453 (56%), Gaps = 24/453 (5%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P    + ++GCQMN  DS ++  +  + GY + ++ + ADL++ NTC +RE A  K+Y  
Sbjct: 32  PLTCHITTFGCQMNEKDSEKLLGVLETIGYRQTDT-EYADLVLFNTCTVRENANTKLYGH 90

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLE 141
           LG ++  K    ++  ++++ + GC+ Q E   E+I +  P V+++ G    ++L ELL+
Sbjct: 91  LGHVKKAK----EQNPEMIIGLCGCMMQEEQVVEKIRKSYPFVDLIFGTHNIFKLAELLK 146

Query: 142 -RARFGKRVVD----TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
            RA  G  +VD    TD  VED            +RK      + I  GC+ FC++C+VP
Sbjct: 147 ARADSGGMIVDIWKDTDQIVEDL---------PSDRKFSFKCGVNIMFGCNNFCSYCIVP 197

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256
           Y RG E SR    ++ E   L+  GV E+ LLGQNVN++ GK LD E  +F+ LL  + +
Sbjct: 198 YVRGRERSRKPEDIIREIEGLVQEGVREVMLLGQNVNSY-GKNLD-EPVSFAQLLQKIEQ 255

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           I+GL R+R+ T HP+D+SD LI+       +  ++HLPVQSGS RILK MNR +T   Y 
Sbjct: 256 IEGLARIRFMTPHPKDLSDELIEVMASSKKICRHMHLPVQSGSSRILKKMNRHYTKESYL 315

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
            + ++I+   P IA+++D IVGFPGET++DF  T+D+V K+ +  A++F YS R GTP +
Sbjct: 316 ALAEKIKEKIPGIAMTTDIIVGFPGETEEDFEETLDVVRKVKFDSAYTFVYSKRTGTPAA 375

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVG-QIIEVLIEKHGKEKGKLVGRSPWL 435
           +M +QV+  V  +R   L + ++E         +G +   ++ EK+  E G + GR    
Sbjct: 376 SMEDQVEPEVVKKRFSRLLEVIKESSKDNRKDGIGKEEEVLVEEKNTHEDGMVTGRLSNN 435

Query: 436 QSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
             V        IG +++V+IT+ K     GE V
Sbjct: 436 ILVHFKGDESLIGQLVRVKITEEKGFYYMGEQV 468


>gi|229890692|sp|A7GZE1|MIAB_CAMC5 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
          Length = 433

 Score =  271 bits (692), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 160/449 (35%), Positives = 249/449 (55%), Gaps = 20/449 (4%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRM-EDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++ F+++ GC MNV DS  +  ++   + Y    ++++ADLI++NTC +REK   K++
Sbjct: 1   MSKKLFIQTLGCAMNVRDSEHIIAELSQKEDYTLTQNLEEADLILINTCSVREKPVHKLF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S +G     K +  K G      V GC A   G+EI +R+P V+ V+G +   ++   ++
Sbjct: 61  SEVGAFEKAKKNGAKIG------VCGCTASHLGDEIFKRAPYVDFVLGARNVSKISTAVK 114

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
             +F    ++ D S E  F        G  R     + + I  GCDK CT+C+VP+TRG 
Sbjct: 115 TPKFISTDINHDES-EYAF--------GEFRGSPYKSHINISIGCDKKCTYCIVPHTRGD 165

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG--EKCTFSDLLYSLSEIKG 259
           EIS   + ++ E  K   NG  EI LLGQNVN + GK   G  EK  FSDLL  +SE+ G
Sbjct: 166 EISIPANLILREVEKAATNGAKEIFLLGQNVNNY-GKRFSGAHEKIDFSDLLVRISEVAG 224

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           + R+R+T+ HP  M D  ++       +   +H+P+QSG+ ++L+ M R +T   +    
Sbjct: 225 VERIRFTSPHPLHMDDKFLEIFSQNPKICKSMHMPLQSGNTKVLREMKRGYTKEWFLDRA 284

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            ++R + PD++IS+D IV FPGE+D +F  TMD+++++ + Q FSFKYSPR  T  +   
Sbjct: 285 AKLREMCPDVSISTDIIVAFPGESDAEFEDTMDVLERVKFEQIFSFKYSPRPMTKAAEFT 344

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV 439
            Q+DE   + RL  LQ +  E       A  G+I++V  E+  +  G + GRS     V 
Sbjct: 345 NQIDEATASARLTRLQSRHNEILDEIVAAQEGKILDVYFEEL-RANGGVAGRSFNNFLVQ 403

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
           +N     +G  +KV+ITD K   LYGEL 
Sbjct: 404 VNGSEELLGRTLKVKITDTKRMVLYGELA 432


>gi|303236111|ref|ZP_07322713.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella disiens
           FB035-09AN]
 gi|302483693|gb|EFL46686.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella disiens
           FB035-09AN]
          Length = 443

 Score =  271 bits (692), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 157/450 (34%), Positives = 263/450 (58%), Gaps = 15/450 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ ++++YGCQMNV DS  +  +    GY+     ++AD I LNTC IRE A  K+Y+ L
Sbjct: 2   KKLYIETYGCQMNVADSEVVASVMKMAGYDVCEKEEEADAIFLNTCSIRENAENKIYNRL 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             +   K    ++G ++++ V GC+A+   ++++  +   N+V GP +Y  LPE++ R  
Sbjct: 62  ETLYAEK----RKGREVILGVLGCMAERVRKDLIE-NHYANLVCGPDSYLNLPEMIARCE 116

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G   +D D S  + +  +     G NR   V+ F++I  GC+ FC +C+VP+TRG E S
Sbjct: 117 NGHNAMDVDLSTTETYRDIVPQRIGGNR---VSGFVSIMRGCNNFCHYCIVPFTRGRERS 173

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK----CTFSDLLYSLSEIKGL 260
           R +  ++ E + L D G  E+TLLGQNVN++ G   +G++     +F++LL  +++    
Sbjct: 174 RDVESILREVKDLHDRGFKEVTLLGQNVNSY-GLLPNGKRPENGTSFAELLRKVAQSVPD 232

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
           +R+R++TS+P DM++ ++ A  +   L  ++H P QSGS+++LK MNR++T  +Y + + 
Sbjct: 233 MRVRFSTSNPEDMTEDILHAVAEEPNLCNHIHFPAQSGSNKVLKDMNRKYTREDYLEKVA 292

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML- 379
            IR + P+  +++D  VG+  ET +D   T+ LV +  +  AF FKYS R GT  +  L 
Sbjct: 293 AIRRIIPNCGLTTDIFVGYHDETLEDQELTLSLVRECQFDSAFMFKYSERPGTYAAKHLP 352

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSV 438
           + V E  K  RL  L K   E     N    G+  ++LIE+  K  + +L+GR+   ++V
Sbjct: 353 DNVSEEEKVRRLNELIKLQTEISAQQNKKDEGKEFDILIERFSKRSREQLMGRTEQNKAV 412

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           V+   NH+IG+ ++VRIT    +TL GE V
Sbjct: 413 VIPRGNHHIGETVRVRITSSSSATLIGEAV 442


>gi|255323483|ref|ZP_05364614.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Campylobacter showae
           RM3277]
 gi|255299520|gb|EET78806.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Campylobacter showae
           RM3277]
          Length = 436

 Score =  271 bits (692), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 161/447 (36%), Positives = 249/447 (55%), Gaps = 20/447 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRM-EDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ F+++ GC MNV DS  +  ++   + YE    + +ADLI++NTC +REK   K++S 
Sbjct: 6   KKLFIQTLGCAMNVRDSEHIIAELKQKEDYELTQDISEADLILINTCSVREKPVHKLFSE 65

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G    +K +  K G      V GC A   G EI +R+P V+ ++G +   ++   ++  
Sbjct: 66  VGGFEKVKKAGAKIG------VCGCTASHLGSEIFKRAPYVDFILGARNVSKISAAVKTP 119

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           +F    ++ D S E  F        G  R     +++ I  GCDK CT+C+VP+TRG EI
Sbjct: 120 KFISTDINHDES-EYAF--------GEFRGSPYKSYINISIGCDKKCTYCIVPHTRGDEI 170

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG--EKCTFSDLLYSLSEIKGLV 261
           S   + ++ E +K  + G  EI LLGQNVN + GK   G  EK  FSDLL  +SEI+G+ 
Sbjct: 171 SIPANLILREVKKAAEGGAKEIFLLGQNVNNY-GKRFSGTHEKIDFSDLLVKISEIEGVE 229

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+T+ HP  M D  ++       +   +H+P+QSGS ++L+ M R +T   +     R
Sbjct: 230 RIRFTSPHPLHMDDKFLEIFSQNPKICKSMHMPLQSGSTKVLREMKRGYTKEWFLDRAGR 289

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R++ P+++IS+D IV FP ETD++F  TMD+++K+ + Q FSFKYSPR  T  +    Q
Sbjct: 290 LRAMCPEVSISTDIIVAFPSETDEEFEDTMDVLEKVRFEQIFSFKYSPRPMTKAAEFTNQ 349

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           + E V + RL  LQ +  E       A  G+I +V  E+  +  G + GRS     V + 
Sbjct: 350 IPEAVASARLTRLQSRHNEILDEIVAAQKGKIFDVYFEEL-RANGGVAGRSFNNFLVQVA 408

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                +G  +KVR+ D K   LYGELV
Sbjct: 409 GSEELLGKTLKVRVNDPKRMVLYGELV 435


>gi|189485484|ref|YP_001956425.1| hypothetical protein TGRD_481 [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
 gi|229891020|sp|B1H0D2|MIAB_UNCTG RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|170287443|dbj|BAG13964.1| conserved hypothetical protein [uncultured Termite group 1
           bacterium phylotype Rs-D17]
          Length = 418

 Score =  271 bits (692), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 144/442 (32%), Positives = 252/442 (57%), Gaps = 26/442 (5%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           + +++ GCQMNV DS  +  +F + G  + N++ +AD+++LNTC +R +A +K +S+LGR
Sbjct: 3   YLIETIGCQMNVCDSDMLVSIFSAYGASKANNLSEADVVILNTCSVRSQAEQKAFSYLGR 62

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           ++  K    ++   + +VV GC+A+  G  I +R   V++++G +      ++   A   
Sbjct: 63  VKEFK----QKNPCIKIVVIGCMAERLGPNIKKRFSSVDLIIGAK------DIGNAALKI 112

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
             +  TDYS +     +         K  +  ++TI  GCD +C++C VP+ RG E+S +
Sbjct: 113 MNLFRTDYSAKKVNSEI---------KSKIVRYITIMRGCDNYCSYCAVPFVRGREVSIN 163

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
              +V+E   ++ NG  EI LLGQNVN+++      E   F+ L+   + I+ L R+R+ 
Sbjct: 164 CETIVNECSSMVKNGAREIILLGQNVNSYQY-----EDVNFASLIKKTAAIENLERIRFM 218

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
           T+HP+D+SD LIK       + P++H+P+QS SD+ILK+MNR+++   Y  +I ++R+  
Sbjct: 219 TNHPKDLSDDLIKIMATEPKVCPHIHIPMQSASDKILKAMNRKYSYEHYLGLIKKLRTAV 278

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           PD+++++D IVGFPGETD+DF  T+  V  I +   + F+YSPR  T  + M++ V    
Sbjct: 279 PDVSVTTDIIVGFPGETDEDFEDTLKAVKTIRFGGLYVFRYSPRPDTKAAEMIDDVPFEE 338

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHN 446
           K  R   + K+  +  +      +G   +VL E+   + G +  R+   + V    +   
Sbjct: 339 KKRRHAVVLKESNKISIEIVSEMLGSTQQVLAEEI--KNGIIKARTKNGRKVFAEGRKEY 396

Query: 447 IGDIIKVRITDVKISTLYGELV 468
           IG  I V I + KI++L+G++V
Sbjct: 397 IGKHINVNIKEAKINSLFGDIV 418


>gi|21674804|ref|NP_662869.1| hypothetical protein CT1993 [Chlorobium tepidum TLS]
 gi|81790619|sp|Q8KB05|MIAB_CHLTE RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|21648022|gb|AAM73211.1| conserved hypothetical protein [Chlorobium tepidum TLS]
          Length = 444

 Score =  271 bits (692), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 171/454 (37%), Positives = 247/454 (54%), Gaps = 25/454 (5%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           +P  F++ ++GCQMN  DS  +  +  ++G+       +AD+++LN+C +RE A E++ +
Sbjct: 8   MPSSFYIHTFGCQMNQADSEIVTALLRAEGFVPSADETNADIVLLNSCAVRENAEERLGN 67

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            L  ++  K  R KE   L++ V GCV Q E E +    P V+ +VGP  Y  L  L+  
Sbjct: 68  ILMHLKGRKR-RCKE---LVIGVLGCVPQFERERVFSDYPFVDFIVGPDNYRELAGLVAG 123

Query: 143 ARFG-KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
            R    R    DY   + +  +  V  G      ++AFL +  GC+  C FCVVP TRG 
Sbjct: 124 LREAVARPALLDYDQTETYAGIEPVRAG-----SISAFLPVMRGCNNHCAFCVVPVTRGR 178

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG--KGLDGEKCTFSDLLYSLSEIKG 259
           E S    +VV E   L   G  E+TLLGQNVN+WR   KGLD     F+ LL  +S    
Sbjct: 179 ERSVGFERVVAEVVALEKAGFREVTLLGQNVNSWRDAEKGLD-----FAGLLEGVSLAVP 233

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
            +R+R+TTSHP+D+S+ L+K       L  ++HLPVQSGS R+L  M R HT  EY   I
Sbjct: 234 SMRIRFTTSHPKDISEALVKVIAARPNLCNHIHLPVQSGSSRMLDLMKRGHTREEYLDRI 293

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NM 378
             IRS  P++AI++D I GF  ET+ D R T+ L++ +GY  AF F YS R GT  + N+
Sbjct: 294 AMIRSYIPEVAITTDLIAGFCTETEKDHRETLSLMEAVGYDTAFMFHYSVRPGTWAARNL 353

Query: 379 LEQVDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPW 434
            + V + VK  RL   + LQ  +  +        +G+ +EVL E   K  +  L+GR+P 
Sbjct: 354 PDDVPDTVKKARLQEIIELQNAISREIFQRE---IGKTVEVLAEAESKRSESMLMGRTPE 410

Query: 435 LQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            + VV +    N  D + V+IT    +TL GE V
Sbjct: 411 NRVVVFSRGRFNPSDTLLVKITGATSATLSGEAV 444


>gi|331084790|ref|ZP_08333878.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Lachnospiraceae bacterium 9_1_43BFAA]
 gi|330410884|gb|EGG90306.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Lachnospiraceae bacterium 9_1_43BFAA]
          Length = 491

 Score =  270 bits (691), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 162/437 (37%), Positives = 245/437 (56%), Gaps = 23/437 (5%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           ++GCQMN  DS ++  +    GY+   + ++AD ++ NTC +RE A  +VY  LG++  +
Sbjct: 61  TFGCQMNARDSEKLLGVLEQIGYQEETNEEEADFVIYNTCTVRENANMRVYGRLGQLNRV 120

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
           K    K+   +L+ + GC+ Q     E+I +    V+++ G    Y+  EL+      +R
Sbjct: 121 K----KQKPHMLIGLCGCMMQEPEVVEKIKKSYRFVDLIFGTHNIYKFAELIVTRLESQR 176

Query: 149 VV-----DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           +V     DTD  VED             RK    + + I  GC+ FC++C+VPY RG E 
Sbjct: 177 MVIDIWKDTDKIVEDL---------PSERKFSFKSGVNIMFGCNNFCSYCIVPYVRGRER 227

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR+   ++ E + L+ +GV E+ LLGQNVN++ GK L+    TF+ LL  + +I+GL R+
Sbjct: 228 SRNPEDIIREIQGLVADGVVEVMLLGQNVNSY-GKTLE-HPMTFAQLLTEIEKIEGLERI 285

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+ TSHP+D+SD LI+       +  +LHLPVQSGS  ILK MNRR+T  +Y +++ +I+
Sbjct: 286 RFMTSHPKDLSDELIEVMKHSKKICKHLHLPVQSGSTEILKKMNRRYTKEQYLELVRKIK 345

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              PDI++++D IVGFPGET++DF  TMD+V K+ Y  AF+F YS R GTP + M  QV 
Sbjct: 346 EAVPDISLTTDIIVGFPGETEEDFLETMDVVKKVRYDSAFTFIYSKRTGTPAAAMENQVP 405

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GRSPWLQSVVLNS 442
           E+V  +R   L K+++           G    VL+E        LV GR      V    
Sbjct: 406 EDVVKDRFDRLLKEVQSISAEVCSVHEGTTQSVLVEAVNDHDPALVTGRLSNNILVHFPG 465

Query: 443 KNHNIGDIIKVRITDVK 459
           +   IG I+ VR+   K
Sbjct: 466 EKELIGKIVSVRLDACK 482


>gi|255036486|ref|YP_003087107.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Dyadobacter
           fermentans DSM 18053]
 gi|254949242|gb|ACT93942.1| RNA modification enzyme, MiaB family [Dyadobacter fermentans DSM
           18053]
          Length = 489

 Score =  270 bits (691), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 167/455 (36%), Positives = 253/455 (55%), Gaps = 18/455 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +R F++SYGCQMN  DS  +  +    G+   + ++DADLI LNTC IR+ A +KV + L
Sbjct: 35  KRLFIESYGCQMNFSDSEIVASVMRDAGFATTSDVNDADLIFLNTCAIRDNAEQKVRNRL 94

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            ++  LK    K    +L+ V GC+A+    + L    +V++V GP  Y  LP L++ A 
Sbjct: 95  KQLNFLK----KNKPGMLIGVLGCMAERLKTKFLEEEKMVDIVTGPDAYRDLPRLVDEAE 150

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G++ V+   S E+ +  +S +    N   GVTAF++I  GCD  C+FCVVP+TRG E S
Sbjct: 151 TGQKGVNVFLSREETYADISPIRLNSN---GVTAFISIMRGCDNMCSFCVVPFTRGRERS 207

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-------GLDGEK-CTFSDLLYSLSE 256
           R    +V EA  L  +G  E+TLLGQNV++++ K       GL GE    F+ LL  +++
Sbjct: 208 RDPYSIVKEAEDLFRDGYREVTLLGQNVDSYKWKPEATAEGGLTGETIVNFAHLLEMVAK 267

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           +   +R+R++TSHP+D++D ++      D +  Y+HLP QSG+ R+L+ MNR +T   Y 
Sbjct: 268 VSPELRIRFSTSHPKDITDEVLYTMKKYDNICKYIHLPAQSGNTRVLEIMNRTYTREWYM 327

Query: 317 QIIDRIRSVRPD-IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
           + ID IR +  D   IS D I GF  ET+++ R T+ L++   +   F F YS R GT  
Sbjct: 328 ERIDAIRRILGDECGISQDMIAGFCTETEEEHRDTLSLMEYAKFDFGFMFAYSERPGTLA 387

Query: 376 SNML-EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSP 433
           +    + + E+VK  RL  + +  +   ++ N   VG I  VLIE   K     L GR+ 
Sbjct: 388 AKKFKDDIPEDVKKRRLAEIIEVQQRLSLARNQQLVGTIQRVLIEGTSKRSDDDLSGRND 447

Query: 434 WLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
             + VV   +N   G  + V IT+    TL G +V
Sbjct: 448 QNKKVVFPRENFEKGQYVDVLITECTTVTLLGHVV 482


>gi|312880310|ref|ZP_07740110.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Aminomonas paucivorans
           DSM 12260]
 gi|310783601|gb|EFQ23999.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Aminomonas paucivorans
           DSM 12260]
          Length = 446

 Score =  270 bits (690), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 169/448 (37%), Positives = 242/448 (54%), Gaps = 23/448 (5%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           F +  YGCQMN YD  R+       G+  V   D+AD ++  TC IR+KA +KV S LGR
Sbjct: 4   FKIDVYGCQMNAYDGDRLRTALSGAGWTEVQGEDEADAVLFVTCSIRDKAEQKVASELGR 63

Query: 87  IRNLKNSRIKEGGDLLVVVA--GCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R         GG    VVA  GC+AQ  GE+I RR P V ++ GP+   R+PE L R  
Sbjct: 64  YR-------PGGGRKAPVVALLGCMAQRLGEDIPRRFPWVRLLAGPRHLGRVPEALGRCL 116

Query: 145 FGKRV---VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
              ++   +D D    +       V  G      + A++TI  GCD FC +C+VPY RG 
Sbjct: 117 EDDQLRVFLDEDPRALEDLRFPPQVTPG-----SIRAYVTIAHGCDHFCAYCIVPYVRGR 171

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGL 260
             SR    ++ E R L D GV EITLLGQNVN +   G+D  +  +F  LL  ++E+ G+
Sbjct: 172 FQSRDPEAILREVRCLADRGVREITLLGQNVNRF---GVDRSDGFSFPRLLREVAEVPGV 228

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
           +R+RY TSHP D S+ L++   +   + P L+LPVQSGSDRIL +M R +    YR+ + 
Sbjct: 229 LRVRYATSHPVDFSEELVRVMAEHPRVCPALNLPVQSGSDRILAAMGRGYDGASYRRSVG 288

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
            +R   PD  +++D IVGFPGET++DFR ++ L++++ + Q  S  YS R GT   ++  
Sbjct: 289 LLRERVPDAGLTTDLIVGFPGETEEDFRESLSLLEELRFDQVHSAAYSVRPGTRAESLPG 348

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVV 439
            +D+  +  RL  +           N+  VG+++ VL E    K +G   GR+P    VV
Sbjct: 349 HLDQATRMRRLGEVNDLQSRIAREINETYVGRVLPVLAEGPAPKGEGFWQGRTP-QDKVV 407

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGEL 467
           L       G+ I VRI   +   L GE+
Sbjct: 408 LFPGPATAGEEILVRIVSAETWYLRGEV 435


>gi|330902117|gb|EGH33396.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Pseudomonas
           syringae pv. japonica str. M301072PT]
          Length = 294

 Score =  270 bits (690), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 135/293 (46%), Positives = 189/293 (64%), Gaps = 2/293 (0%)

Query: 178 AFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG 237
           A++++ EGC K+CTFCVVPYTRG E+SR    V+ E   L +NGV E+TLLGQNVN +RG
Sbjct: 1   AYVSVMEGCSKYCTFCVVPYTRGEEVSRPFDDVLSEVIHLAENGVREVTLLGQNVNGYRG 60

Query: 238 KGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQS 297
              DG     +DL+  ++ + G+ R+RYTTSHP + SD LI+AH ++  L+ +LHLPVQS
Sbjct: 61  TTHDGRVADLADLIRVVAAVDGIDRIRYTTSHPLEFSDSLIQAHAEVPELVKHLHLPVQS 120

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
           GSDRIL +M R HT  EY+  + ++R+  P I+ISSDFIVGFPGET+ DF  TM L++ +
Sbjct: 121 GSDRILAAMKRNHTTLEYKSRLRKLRAAVPGISISSDFIVGFPGETEKDFDNTMKLIEDV 180

Query: 358 GYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVL 417
           G+  +FSF YSPR GTP +++ +   E +K ERL  LQ +L +Q    +   VG I  +L
Sbjct: 181 GFDFSFSFVYSPRPGTPAADLKDDTPEALKKERLAALQHRLNQQGFEISRQMVGSIQRIL 240

Query: 418 IEKHG-KEKGKLVGRSPWLQSVVLNSKNHN-IGDIIKVRITDVKISTLYGELV 468
           +  +  K+ G+L GR+   + V     N   IG    V I D +  +L G L+
Sbjct: 241 VTDYSKKDPGELQGRTENNRIVNFRCDNPKLIGQFADVHIDDAQPHSLRGSLL 293


>gi|317472764|ref|ZP_07932076.1| MiaB family RNA modification enzyme [Anaerostipes sp. 3_2_56FAA]
 gi|316899756|gb|EFV21758.1| MiaB family RNA modification enzyme [Anaerostipes sp. 3_2_56FAA]
          Length = 470

 Score =  270 bits (690), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 164/453 (36%), Positives = 257/453 (56%), Gaps = 24/453 (5%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P    + ++GCQMN  DS ++  +  + GY + ++ + ADL++ NTC +RE A  K+Y  
Sbjct: 32  PLTCHITTFGCQMNEKDSEKLLGVLETIGYRQTDT-EYADLVLFNTCTVRENANTKLYGH 90

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLE 141
           LG ++  K    ++  ++++ + GC+ Q E   E+I +  P V+++ G    ++L ELL+
Sbjct: 91  LGHVKKAK----EQNPEMIIGLCGCMMQEEQVVEKIRKSYPFVDLIFGTHNIFKLAELLK 146

Query: 142 -RARFGKRVVD----TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
            RA  G  +VD    TD  VED            +RK      + I  GC+ FC++C+VP
Sbjct: 147 ARADSGGMIVDIWKDTDQIVEDL---------PSDRKFSFKCGVNIMFGCNNFCSYCIVP 197

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256
           Y RG E SR    ++ E   L+  GV E+ LLGQNVN++ GK LD E  +F+ LL  + +
Sbjct: 198 YVRGRERSRKPEDIIREIEGLVQEGVREVMLLGQNVNSY-GKNLD-EPVSFAQLLQKIEQ 255

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           I+GL R+R+ T HP+D+SD LI+       +  ++HLPVQSGS RILK MNR +T   Y 
Sbjct: 256 IEGLARIRFMTPHPKDLSDELIEVMASSKKICRHMHLPVQSGSSRILKKMNRHYTKESYL 315

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
            + ++I+   P IA+++D IVGFPGET++DF  T+D+V K+ +  A++F YS R GTP +
Sbjct: 316 ALAEKIKEKIPGIAMTTDIIVGFPGETEEDFEETLDVVRKVKFDSAYTFVYSKRTGTPAA 375

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVG-QIIEVLIEKHGKEKGKLVGRSPWL 435
            M +QV+  V  +R   L + ++E         +G +   ++ EK+  E G + GR    
Sbjct: 376 AMEDQVEPEVVKKRFSRLLEVIKESSKDNRKDGIGKEEEVLVEEKNTHEDGMVTGRLSNN 435

Query: 436 QSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
             V        IG +++V+IT+ K     GE V
Sbjct: 436 ILVHFKGDESLIGQLVRVKITEEKGFYYMGEQV 468


>gi|291296231|ref|YP_003507629.1| RNA modification enzyme, MiaB family [Meiothermus ruber DSM 1279]
 gi|290471190|gb|ADD28609.1| RNA modification enzyme, MiaB family [Meiothermus ruber DSM 1279]
          Length = 440

 Score =  270 bits (690), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 166/444 (37%), Positives = 251/444 (56%), Gaps = 29/444 (6%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           +YGCQMN YD+  +     S G E V+   +AD +++NTC +R K  EKV S LG +R  
Sbjct: 7   TYGCQMNEYDTHLVRSELVSLGAEFVDHWREADFVLVNTCAVRGKPVEKVRSLLGELRKE 66

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE-RARFGKRV 149
           K  R      LLV + GC+AQ E  + + R   V+V++GP     + + LE ++RF    
Sbjct: 67  KEKR-----PLLVGMMGCLAQLEEGQQMARKFEVDVLLGPGALTEIGKALEAKSRFW--- 118

Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209
            D  +  E+    L     G      ++AF++I  GC+  CT+C+VP TRG E+SR    
Sbjct: 119 -DLSFR-EELTHHLPPAPQG-----ALSAFVSIIRGCNHHCTYCIVPTTRGPEVSRHPDL 171

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSH 269
           ++ E  +L   GV E+TLLGQNVN++ GK   G   +F++LL  ++++ G+ R+++TTSH
Sbjct: 172 ILREVEQLKAAGVLEVTLLGQNVNSY-GKDQPGFP-SFAELLRLVAQV-GIPRIKFTTSH 228

Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ--IIDRIRSVR- 326
           P + +D +I A  +   +  Y+HLPVQSGS+R+L+ M R     EYR+   +DRIR++R 
Sbjct: 229 PVNFTDDVIAAMAETPQICRYIHLPVQSGSNRVLRRMGR-----EYRREWYLDRIRAIRE 283

Query: 327 --PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             PD+ +S+D IVGFPGET++DF+AT+ L D++ Y  A+ F YSPR GTP     + +  
Sbjct: 284 AMPDVVLSTDIIVGFPGETEEDFQATLSLYDEVRYDSAYMFIYSPRPGTPSYKHFQDLPR 343

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
            VK ERL  L +K +E     N   VGQ +EVL+    K+   + G +      +L +  
Sbjct: 344 EVKVERLQRLIEKQKEWSYRQNQRWVGQTVEVLVRGAAKDDSFVEGHTRGNHPTLLPAAQ 403

Query: 445 HNIGDIIKVRITDVKISTLYGELV 468
                + +  I       L GE+V
Sbjct: 404 APRPGLYQAVIQQATPHMLLGEVV 427


>gi|313681425|ref|YP_004059163.1| tRNA-i(6)a37 thiotransferase enzyme miab [Sulfuricurvum kujiense
           DSM 16994]
 gi|313154285|gb|ADR32963.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Sulfuricurvum kujiense
           DSM 16994]
          Length = 433

 Score =  270 bits (690), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 161/447 (36%), Positives = 247/447 (55%), Gaps = 18/447 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRM-EDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ F+++ GC MNV DS  M  ++   +GYE  +    ADLI++NTC +REK   K++S 
Sbjct: 3   KKLFIETLGCAMNVRDSEHMIAELNAHEGYELTDDAASADLILINTCSVREKPVHKLFSE 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LG    LK +  K G      V GC A   G+EI++R+P VN V+G +   ++ ++L R 
Sbjct: 63  LGVFNKLKKADAKIG------VCGCTASHLGKEIIKRAPYVNFVLGARNVSKIADVLHRD 116

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           R  +  +D D   E +F         Y       A++ I  GCDK CTFC+VP TRG EI
Sbjct: 117 RAVEVEIDYD---ESQFAFKDFRSSPYK------AYINISIGCDKQCTFCIVPKTRGDEI 167

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVR 262
           S     +V E RK ++NG  E+ LLGQNVN +  +  D  +K  F++LL  +S ++GL R
Sbjct: 168 SIPPDLIVAEVRKAVENGAKEVFLLGQNVNNYGRRFSDVNDKMNFTELLRRVSAVEGLER 227

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+T+ HP  M D  ++       +   +H+P+QSGS  ILK+M R +T   +     ++
Sbjct: 228 IRFTSPHPFHMDDEFLEEFARNPKICKSMHMPLQSGSTDILKAMKRGYTKEWFLNRARKL 287

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R + PD++IS+D IV FPGE+D DF  T+D++ ++ + Q FSFKYSPR  T   +    V
Sbjct: 288 RELVPDVSISTDIIVAFPGESDADFEDTLDVMKEVRFEQVFSFKYSPRPLTEAESFTNVV 347

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
           D  + + RL  LQ        S +   +G+  +V  E+  +  G + GRS     + +  
Sbjct: 348 DSELGSFRLSTLQAYQDTILDSISAGLLGKEYDVYFEEL-RSDGYVAGRSDNNIMIKVKG 406

Query: 443 KNHNIGDIIKVRITDVKISTLYGELVV 469
               +G I +V+IT+V  S  YGE++ 
Sbjct: 407 SEEWLGKIARVKITEVSRSVQYGEIIA 433


>gi|330466440|ref|YP_004404183.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Verrucosispora
           maris AB-18-032]
 gi|328809411|gb|AEB43583.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Verrucosispora
           maris AB-18-032]
          Length = 491

 Score =  270 bits (689), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 156/416 (37%), Positives = 233/416 (56%), Gaps = 32/416 (7%)

Query: 36  MNVYDSLRMEDMFFSQGYERVNSMDDA-DLIVLNTCHIREKAAEKVYSFLGRIRNLKNSR 94
           MNV+DS R+  +    GY R    DD+ D++V NTC +RE A  ++Y  LG +R +K+  
Sbjct: 1   MNVHDSERISGLLEQAGYVRAGESDDSPDVVVFNTCAVRENADNRLYGNLGHLRPVKDRH 60

Query: 95  IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDY 154
                 + + V GC+AQ +  +I+R++P V+VV G      LP LLERAR      +   
Sbjct: 61  PG----MQIAVGGCLAQKDRGDIVRKAPWVDVVFGTHNIGSLPVLLERARH-----NAAA 111

Query: 155 SVEDKFERLSIVDGGYNRKRGVT--AFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVD 212
            VE   E L +       +R  T   +++I  GC+  CTFC+VP  RG E  R    ++ 
Sbjct: 112 EVE-ILESLDVFPSTLPTRRESTYAGWVSISVGCNNTCTFCIVPALRGKEKDRRPGDILS 170

Query: 213 EARKLIDNGVCEITLLGQNVNA------------WRGKGLDGEKCTFSDLLYSLSEIKGL 260
           E R L+D GV E+TLLGQNVN+            W+     G +  F+ LL +  +I GL
Sbjct: 171 EVRALVDEGVLEVTLLGQNVNSYGVAFGDAGEPNWK---RSGGRSAFAQLLRACGDIDGL 227

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+T+ HP+D +D +I A  +   +   LH+P+QSGSD +L++M R + A  Y  IID
Sbjct: 228 ERVRFTSPHPKDFTDDVIAAMAETPNVCHSLHMPLQSGSDDVLRAMRRSYRAERYLGIID 287

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R+  PD AI++D IVGFPGET+ DF  T+D+V    ++ AF+F+YS R GTP + M  
Sbjct: 288 KVRAAMPDAAITTDIIVGFPGETEADFERTLDVVRAARFSSAFTFQYSKRPGTPAATMDG 347

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE----KHGKEKGKLVGRS 432
           Q+ + V  ER   L   + E   + N   VG+ +EVL+     +  +  G+L GR+
Sbjct: 348 QLPKQVVQERYERLIACVEEITWAENKKLVGEAVEVLVAVGEGRKDERTGRLSGRA 403


>gi|283955880|ref|ZP_06373370.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Campylobacter jejuni
           subsp. jejuni 1336]
 gi|283792540|gb|EFC31319.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Campylobacter jejuni
           subsp. jejuni 1336]
          Length = 433

 Score =  270 bits (689), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 162/447 (36%), Positives = 247/447 (55%), Gaps = 20/447 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRM-EDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ F+++ GC MNV DS  M  ++   + Y     + +ADLI++NTC +REK   K++S 
Sbjct: 4   KKLFIQTLGCAMNVRDSEHMIAELTQKENYALTEDIKEADLILINTCSVREKPVHKLFSE 63

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G    +K    KEG    + V GC A   G EI +R+P V+ V+G +   ++ + ++  
Sbjct: 64  VGGFEKVK----KEGAK--IGVCGCTASHLGNEIFKRAPYVDFVLGARNISKITQAIKTP 117

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           +F    VD DY  E +F      +  Y       +++ I  GCDK CT+C+VP+TRG EI
Sbjct: 118 KFMG--VDIDYD-ESEFAFADFRNSIYK------SYINISIGCDKHCTYCIVPHTRGDEI 168

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE--KCTFSDLLYSLSEIKGLV 261
           S   + +  EA+K ++ G  EI LLGQNVN + GK    E  K  FSDLL  LS I+GL 
Sbjct: 169 SIPFNIIYKEAQKAVEKGAKEIFLLGQNVNNY-GKRFRNEHKKMDFSDLLEELSTIEGLE 227

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+T+ HP  M D  +K   +   +   +H+P+QSGS  ILK+M R +T   Y     +
Sbjct: 228 RIRFTSPHPLHMDDKFLKVFANNPKVCKSMHMPLQSGSSEILKAMKRGYTKEWYLNRALK 287

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R + P+++IS+D IV FPGE++ DF  TMD+++K+ + Q FSFKYS R  T  + M  Q
Sbjct: 288 LRELCPNVSISTDIIVAFPGESEKDFEETMDVLEKVRFEQIFSFKYSKRPLTKAATMPNQ 347

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           +DE   + RL  LQ +  E           +  +VL E+  +    + GR+     V + 
Sbjct: 348 IDEETASRRLSTLQNRHSEILDEIVKKQENKTFKVLFEEL-RAGNSIAGRTDNNFLVQVE 406

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                +G   +V+IT+ K   LYGE+V
Sbjct: 407 GSEELLGQFKEVKITNAKRMVLYGEIV 433


>gi|269926079|ref|YP_003322702.1| RNA modification enzyme, MiaB family [Thermobaculum terrenum ATCC
           BAA-798]
 gi|269789739|gb|ACZ41880.1| RNA modification enzyme, MiaB family [Thermobaculum terrenum ATCC
           BAA-798]
          Length = 432

 Score =  269 bits (688), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 160/442 (36%), Positives = 248/442 (56%), Gaps = 24/442 (5%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           F++ + GCQMNV DS R  D     GY+  N   +AD+I+LNTC +RE A  + +  LG 
Sbjct: 6   FYIWTVGCQMNVADSRRAADALKHSGYKETNKPSEADVIILNTCSVRESAERRTWGKLGA 65

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           +  LK  R     D ++V+ GC+  ++   + R+ P+V+  V       + ELL      
Sbjct: 66  LSQLKRQR----PDTIIVMMGCMVHSDTALLHRQFPLVDHFVPAGD---IDELLASIP-- 116

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
                    VED++    + D   +   GVTAF+ +  GC+KFCTFCVVPY RG E S  
Sbjct: 117 --------PVEDEWG-TQLYD--LSSASGVTAFVPVIMGCNKFCTFCVVPYRRGRERSIP 165

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
           +  VV+E R L D GV E+TLLGQ +N + GK L   +   +DLLY++ E+ G+ R+R+ 
Sbjct: 166 IPDVVEEVRFLADRGVKEVTLLGQTINHY-GKDLPN-RPDLADLLYAVHEVPGIERIRFL 223

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
           TS+PR M+D ++ A  DL  +  ++++P Q+G + +L++M R +T  +Y  +IDR+RS+ 
Sbjct: 224 TSYPRTMTDKILHAVADLPKVCEHINIPFQAGDNDVLRAMRRGYTIEQYIDLIDRVRSII 283

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           P ++I++D IVGFP ET++ F+ T D+++++   Q     YSPR GT    M + +    
Sbjct: 284 PGVSIATDIIVGFPNETEEKFQKTYDVLEQLRLDQVHIACYSPRPGTKAYEMGDPIPLEE 343

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHN 446
           K  R   L+++        N    G I EVL E+  K+KGK  GR+   + V ++S+   
Sbjct: 344 KQRRFRILEEQHERISAEINKQLEGTIQEVLFEE--KQKGKWKGRTRTNKLVFVDSEEDL 401

Query: 447 IGDIIKVRITDVKISTLYGELV 468
            G  + VRIT     ++  ELV
Sbjct: 402 TGKTLPVRITHTTAWSMQAELV 423


>gi|255656429|ref|ZP_05401838.1| putative radical SAM superfamily protein [Clostridium difficile
           QCD-23m63]
 gi|296450124|ref|ZP_06891885.1| 2-methylthioadenine synthetase [Clostridium difficile NAP08]
 gi|296878505|ref|ZP_06902510.1| 2-methylthioadenine synthetase [Clostridium difficile NAP07]
 gi|296260887|gb|EFH07721.1| 2-methylthioadenine synthetase [Clostridium difficile NAP08]
 gi|296430312|gb|EFH16154.1| 2-methylthioadenine synthetase [Clostridium difficile NAP07]
          Length = 432

 Score =  268 bits (686), Expect = 9e-70,   Method: Compositional matrix adjust.
 Identities = 162/446 (36%), Positives = 259/446 (58%), Gaps = 29/446 (6%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  M ++F   GYE+VNS + AD+ V+NTC +   +  K   ++ R++  
Sbjct: 8   TLGCKVNQYETEAMLELFEKDGYEQVNSEEYADVYVINTCTVTHMSDRKSRQYIRRVK-- 65

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
                K+  D ++ V GC +Q   EEIL     VN+V+G     ++ E +++    K+V 
Sbjct: 66  -----KKNPDAIIAVVGCYSQVSPEEILDIEE-VNLVMGTNDRRKIVEEIKKINSSKKVS 119

Query: 151 DTDYSVEDK-FERLSIVDGGYNRKRGVT-AFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
             D  ++ K FE + I     ++  G T AF+ IQ+GCD+FCT+C++PY RG   SR + 
Sbjct: 120 TVDDIMKVKAFEEIEI-----SQTNGKTRAFMKIQDGCDRFCTYCIIPYARGRVRSRDID 174

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
            +VDE +KL +NG  E+ L G +V ++ GK L        D++  +++I+ + R+R ++ 
Sbjct: 175 SIVDEVKKLANNGYKEVVLTGIHVASY-GKDLKDRDIKLLDVIKQINKIEKIERIRLSSV 233

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
            P   +D  +     +D + P+ HL +QSG D  LK MNRR+T  EY+ I+DR+RS  PD
Sbjct: 234 EPILFTDEFVNEVLKMDKVCPHYHLSLQSGCDETLKRMNRRYTTLEYKTIVDRLRSKMPD 293

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK- 387
           +AI++D IVGFPGET+++F+ T + + +I  +Q   FKYSPR GTP + M  QVD  +K 
Sbjct: 294 VAITTDVIVGFPGETNEEFKKTYEFLKEIELSQMHIFKYSPRKGTPAATMENQVDPQMKH 353

Query: 388 --AERLLCLQKKLREQQVSFNDAC---VGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
             +E+LL L K      V+FN      +G+ ++VL E++  E  K  G +     VV+ S
Sbjct: 354 FRSEQLLNLSK------VNFNKFATKFIGRKLDVLFEQNL-EGNKYEGLTSNYIRVVVES 406

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
             +  G I+KV+I DVK   + G L+
Sbjct: 407 DKNIQGQILKVKINDVKDEYVEGILL 432


>gi|193211917|ref|YP_001997870.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Chlorobaculum
           parvum NCIB 8327]
 gi|229890476|sp|B3QR49|MIAB_CHLP8 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|193085394|gb|ACF10670.1| RNA modification enzyme, MiaB family [Chlorobaculum parvum NCIB
           8327]
          Length = 443

 Score =  268 bits (686), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 162/455 (35%), Positives = 250/455 (54%), Gaps = 33/455 (7%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           FF+ ++GCQMN+ D+  +  +    G+        AD+++LNTC +R  A ++  + L  
Sbjct: 5   FFIHTFGCQMNMADTEIVTAILVEGGFAPAEDEGTADMVLLNTCAVRANAVDRAGNVLSH 64

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           ++ +K  R      L+V + GCV Q E E++    P V+ +VGP  Y  L  ++   R G
Sbjct: 65  LKGMKRRR----KGLVVGLLGCVPQYEREQLFGDFPFVDFIVGPDNYRDLCGIVRSVREG 120

Query: 147 -KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            +R    DY  ++ +  +  +     R   V+ FL +  GC+  C FCVVP TRG E S 
Sbjct: 121 EQRRAFIDYDQQETYAGIDPI-----RANRVSTFLPVMRGCNNHCAFCVVPVTRGRERSV 175

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAW--RGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           +  +V+ E   L   G  E+TLLGQNVN+W    K LD     F+ LL  +S     +R+
Sbjct: 176 AFDRVIAEVAALEQAGYREVTLLGQNVNSWCDADKSLD-----FAGLLEGVSHAAPSMRI 230

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+TTSHP+D+S+ L++  G+   L  ++HLPVQSGS R+L  M R HT  EY   I  IR
Sbjct: 231 RFTTSHPKDISESLVRVIGERPNLCKHIHLPVQSGSSRMLDLMKRGHTREEYLDKIAMIR 290

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQV 382
            + P +AI++D I GF  ET+ D R T+ L++ +GY  AF F YS R GT  + N+ + V
Sbjct: 291 ELVPGVAITTDLIAGFCTETEVDHRETLSLMEAVGYDTAFMFYYSVRPGTWAARNLPDDV 350

Query: 383 DENVKAERL-------LCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLVGRSPW 434
            E VK  RL         + ++L +++       +G+++EVL E   K    +L+GR+  
Sbjct: 351 PEAVKKARLQEIIDLQTAMSRELYQRE-------IGKVVEVLAEAESKRSASQLMGRTSE 403

Query: 435 LQSVVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
            ++VV + ++   GD++ VRIT    +TL GE +V
Sbjct: 404 NRAVVFSREHFMPGDLVPVRITAATSATLSGEALV 438


>gi|167465242|ref|ZP_02330331.1| tRNA 2-methylthioadenosine synthase [Paenibacillus larvae subsp.
           larvae BRL-230010]
          Length = 376

 Score =  268 bits (686), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 156/376 (41%), Positives = 223/376 (59%), Gaps = 12/376 (3%)

Query: 97  EGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDY 154
           E  +L++ V GC++Q E     IL++   V+++ G    +RLP LL+ A F K +V   +
Sbjct: 1   EKPNLILGVCGCMSQEEAVINLILQKHAFVDLIFGTHNIHRLPFLLQDAYFSKEMVVEVW 60

Query: 155 SVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           S E D  E L +  GG      + A++ I  GCDKFCT+C+VPYTRG E SR    V+ E
Sbjct: 61  SKEGDIIENLPMKRGG------MRAWVNIMYGCDKFCTYCIVPYTRGKERSRRPQDVIQE 114

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
            R+L   G  EITLLGQNVN + GK  D  + TF DL+  + +I  + R+R+TTSHPRD 
Sbjct: 115 VRELARQGFKEITLLGQNVNVY-GKDFDDIEYTFGDLMDDIRKID-IPRVRFTTSHPRDF 172

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
            D LI+       LM ++HLPVQSG+  ILK M+R++T   Y +++ +I+   PD  +++
Sbjct: 173 DDRLIEVLAKKGNLMEHIHLPVQSGNTEILKKMSRKYTRERYLELVGKIKEAIPDAVLTT 232

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLC 393
           D IVGFPGETD+ F  T+ LV ++ Y  AF+F YSPR GTP ++M + +   VK ERL  
Sbjct: 233 DIIVGFPGETDEQFEDTLSLVKEVKYDSAFTFIYSPREGTPAASMEDNIPMEVKKERLAR 292

Query: 394 LQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVLNSKNHNIGDIIK 452
           L + L E     N    GQ++EVL+E   K+  K L GR+   + V        IG+ + 
Sbjct: 293 LNEVLAEFSKESNWELKGQVLEVLVEGQSKKNAKVLSGRTRTNKLVHFEGSKDLIGEFVH 352

Query: 453 VRITDVKISTLYGELV 468
           V+IT+ +   L GE+V
Sbjct: 353 VKITEPQTWLLKGEIV 368


>gi|291550415|emb|CBL26677.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Ruminococcus torques
           L2-14]
          Length = 482

 Score =  268 bits (686), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 164/462 (35%), Positives = 259/462 (56%), Gaps = 39/462 (8%)

Query: 14  VSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIR 73
           V+++ ++   P    V ++GCQMN  DS ++  +    GY      + AD ++ NTC +R
Sbjct: 33  VAEMSEKLGRPLTACVTTFGCQMNSRDSEKLLGILEKVGYAEETDEEKADFVIYNTCTVR 92

Query: 74  EKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQ-AEGEEILRRS-PIVNVVVGPQ 131
           E A  +VY  LG++ ++K    K+    ++ + GC+ Q  E  E L++S   V+++ G  
Sbjct: 93  ENANLRVYGRLGQLGSIK----KKNPHKMIALCGCMMQEPEVVEKLKKSYRFVDLIFGTH 148

Query: 132 TYYRLPELLERARFGKRVV-----DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGC 186
             Y+  ELL  A    R V     DTD  VED       V+  Y  K GV        GC
Sbjct: 149 NIYKFAELLTSAIQSDRTVIDIWKDTDKIVED-----LPVERKYPFKSGVNIMF----GC 199

Query: 187 DKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT 246
           + FC++C+VPY RG E SR    ++ E  +L+ +GV E+ LLGQNVN++ GK L+ E  T
Sbjct: 200 NNFCSYCIVPYVRGRERSREPKAIIREIERLVADGVVEVMLLGQNVNSY-GKNLE-EPMT 257

Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306
           F+ LL  + +I+GL R+R+ TSHP+D+SD LI+       +  +LHLPVQSGS RILK M
Sbjct: 258 FAQLLQEIEKIEGLERIRFMTSHPKDLSDELIEVMSKSKKICKHLHLPVQSGSSRILKLM 317

Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
           NR +   +Y  + ++IR   PD+++++D IVGFPGET++DF+ T+D+V K+ Y  AF+F 
Sbjct: 318 NRHYDKEQYLALAEKIRKAVPDLSLTTDIIVGFPGETEEDFQETLDVVRKVRYDSAFTFI 377

Query: 367 YSPRLGTPGSNMLEQVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKH-- 421
           YS R GTP + M +Q+ E+V   +  RLL   + +  +Q + ++  V  ++   + +H  
Sbjct: 378 YSKRTGTPAAVMEDQIPEDVVKDRFNRLLHEVQTISAEQCAIHEGTVQTVLVECVNEHDH 437

Query: 422 ----GKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVK 459
               G+    L+   P  +S+        IG ++ V + + K
Sbjct: 438 HLMTGRMSNNLLVHFPGDESL--------IGQLVDVHLDECK 471


>gi|126700065|ref|YP_001088962.1| putative radical SAM superfamily protein [Clostridium difficile
           630]
 gi|254976042|ref|ZP_05272514.1| putative radical SAM superfamily protein [Clostridium difficile
           QCD-66c26]
 gi|255093430|ref|ZP_05322908.1| putative radical SAM superfamily protein [Clostridium difficile CIP
           107932]
 gi|255101608|ref|ZP_05330585.1| putative radical SAM superfamily protein [Clostridium difficile
           QCD-63q42]
 gi|255307477|ref|ZP_05351648.1| putative radical SAM superfamily protein [Clostridium difficile
           ATCC 43255]
 gi|255315175|ref|ZP_05356758.1| putative radical SAM superfamily protein [Clostridium difficile
           QCD-76w55]
 gi|255517844|ref|ZP_05385520.1| putative radical SAM superfamily protein [Clostridium difficile
           QCD-97b34]
 gi|255650960|ref|ZP_05397862.1| putative radical SAM superfamily protein [Clostridium difficile
           QCD-37x79]
 gi|260684029|ref|YP_003215314.1| putative radical SAM superfamily protein [Clostridium difficile
           CD196]
 gi|260687689|ref|YP_003218823.1| putative radical SAM superfamily protein [Clostridium difficile
           R20291]
 gi|306520839|ref|ZP_07407186.1| putative radical SAM superfamily protein [Clostridium difficile
           QCD-32g58]
 gi|115251502|emb|CAJ69335.1| putative MiaB-like tRNA modifying enzyme [Clostridium difficile]
 gi|260210192|emb|CBA64398.1| putative radical SAM superfamily protein [Clostridium difficile
           CD196]
 gi|260213706|emb|CBE05587.1| putative radical SAM superfamily protein [Clostridium difficile
           R20291]
          Length = 432

 Score =  268 bits (685), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 162/446 (36%), Positives = 259/446 (58%), Gaps = 29/446 (6%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  M ++F   GYE+VNS + AD+ V+NTC +   +  K   ++ R++  
Sbjct: 8   TLGCKVNQYETEAMLELFEKDGYEQVNSEEYADVYVINTCTVTHMSDRKSRQYIRRVK-- 65

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
                K+  D ++ V GC +Q   EEIL     VN+V+G     ++ E +++    K+V 
Sbjct: 66  -----KKNPDAIIAVVGCYSQVSPEEILDIEE-VNLVMGTNDRRKIVEEIKKINSSKKVS 119

Query: 151 DTDYSVEDK-FERLSIVDGGYNRKRGVT-AFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
             D  ++ K FE + I     ++  G T AF+ IQ+GCD+FCT+C++PY RG   SR + 
Sbjct: 120 TVDDIMKVKAFEEIEI-----SQTNGKTRAFMKIQDGCDRFCTYCIIPYARGRVRSRDID 174

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
            +VDE +KL +NG  E+ L G +V ++ GK L        D++  +++I+ + R+R ++ 
Sbjct: 175 SIVDEVKKLANNGYKEVVLTGIHVASY-GKDLKDRDIKLLDVIKQINQIEKIERIRLSSV 233

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
            P   +D  +     +D + P+ HL +QSG D  LK MNRR+T  EY+ I+DR+RS  PD
Sbjct: 234 EPILFTDEFVNEVLKMDKVCPHYHLSLQSGCDETLKRMNRRYTTLEYKTIVDRLRSKMPD 293

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK- 387
           +AI++D IVGFPGET+++F+ T + + +I  +Q   FKYSPR GTP + M  QVD  +K 
Sbjct: 294 VAITTDVIVGFPGETNEEFKKTYEFLKEIELSQMHIFKYSPRKGTPAATMENQVDPQMKH 353

Query: 388 --AERLLCLQKKLREQQVSFNDAC---VGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
             +E+LL L K      V+FN      +G+ ++VL E++  E  K  G +     VV+ S
Sbjct: 354 FRSEQLLNLSK------VNFNKFATKFIGRELDVLFEQNI-EGNKYEGLTSNYIRVVVES 406

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
             +  G I+KV+I DVK   + G L+
Sbjct: 407 DKNIQGQILKVKINDVKDEYVEGILL 432


>gi|283954250|ref|ZP_06371774.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Campylobacter jejuni
           subsp. jejuni 414]
 gi|283794268|gb|EFC33013.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Campylobacter jejuni
           subsp. jejuni 414]
          Length = 433

 Score =  268 bits (685), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 162/447 (36%), Positives = 247/447 (55%), Gaps = 20/447 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRM-EDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ F+++ GC MNV DS  M  ++   + Y    ++ +ADLI++NTC +REK   K++S 
Sbjct: 4   KKLFIQTLGCAMNVRDSEHMIAELTQKENYALTENIKEADLILINTCSVREKPVHKLFSE 63

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G    +K    KEG    + V GC A   G EI +R+P V+ V+G +   ++ + ++  
Sbjct: 64  VGSFEKVK----KEGAK--IGVCGCTASHLGNEIFKRAPYVDFVLGARNISKITQAIKTP 117

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           +F    VD DY  E +F      +  Y       +++ I  GCDK CT+C+VP+TRG EI
Sbjct: 118 KFMG--VDIDYD-ESEFAFADFRNSIYK------SYINISIGCDKHCTYCIVPHTRGDEI 168

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE--KCTFSDLLYSLSEIKGLV 261
           S   + +  EA+K ++ G  EI LLGQNVN + GK    E  K  FSDLL  LS IK L 
Sbjct: 169 SIPFNIIYKEAQKAVEKGAKEIFLLGQNVNNY-GKRFRNEHKKMDFSDLLEELSTIKDLE 227

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+T+ HP  M D  ++   +   +   +H+P+QSGS  ILK+M R +T   Y     +
Sbjct: 228 RIRFTSPHPLHMDDKFLEVFANNPKVCKSMHMPLQSGSSEILKAMKRGYTKEWYLNRALK 287

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R + P++ IS+D IV FPGE++ DF  TMD+++K+ + Q FSFKYS R  T  + M  Q
Sbjct: 288 LRELCPNVNISTDIIVAFPGESEKDFEETMDVLEKVRFEQIFSFKYSKRPLTKAATMPNQ 347

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           +DE   + RL  LQ +  E           +I +VL E+  +    + GR+     V + 
Sbjct: 348 IDEETASRRLKILQNRHSEILDEIVKKQENKIFKVLFEEL-RAGNAIAGRTDNNFLVQVE 406

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                +G   +V+IT+ K   LYGE+V
Sbjct: 407 GSEELLGHFKEVKITNAKRMVLYGEIV 433


>gi|86153933|ref|ZP_01072136.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Campylobacter jejuni
           subsp. jejuni HB93-13]
 gi|157414751|ref|YP_001482007.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Campylobacter jejuni
           subsp. jejuni 81116]
 gi|229890469|sp|A8FKP3|MIAB_CAMJ8 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|85842894|gb|EAQ60106.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Campylobacter jejuni
           subsp. jejuni HB93-13]
 gi|157385715|gb|ABV52030.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Campylobacter jejuni
           subsp. jejuni 81116]
 gi|307747390|gb|ADN90660.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Campylobacter jejuni subsp. jejuni M1]
 gi|315931101|gb|EFV10075.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Campylobacter jejuni
           subsp. jejuni 327]
          Length = 433

 Score =  268 bits (685), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 161/447 (36%), Positives = 247/447 (55%), Gaps = 20/447 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRM-EDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ F+++ GC MNV DS  M  ++   + Y     + +ADLI++NTC +REK   K++S 
Sbjct: 4   KKLFIQTLGCAMNVRDSEHMIAELTQKENYALTEDIKEADLILINTCSVREKPVHKLFSE 63

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G    +K    KEG    + V GC A   G EI +R+P V+ V+G +   ++ + ++  
Sbjct: 64  VGGFEKVK----KEGAK--IGVCGCTASHLGNEIFKRAPYVDFVLGARNISKITQAIKTP 117

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           +F    VD DY  E +F      +  Y       +++ I  GCDK CT+C+VP+TRG EI
Sbjct: 118 KFMG--VDIDYD-ESEFAFADFRNSIYK------SYINISIGCDKHCTYCIVPHTRGDEI 168

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE--KCTFSDLLYSLSEIKGLV 261
           S   + +  EA+K ++ G  EI LLGQNVN + GK    E  K  FSDLL  LS I+GL 
Sbjct: 169 SIPFNIIYKEAQKAVEKGAKEIFLLGQNVNNY-GKRFRNEHKKMDFSDLLEELSTIEGLE 227

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+T+ HP  M D  ++   +   +   +H+P+QSGS  ILK+M R +T   Y     +
Sbjct: 228 RIRFTSPHPLHMDDKFLEVFANNPKVCKSMHMPLQSGSSEILKAMKRGYTKEWYLNRALK 287

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R + P+++IS+D IV FPGE++ DF  TMD+++K+ + Q FSFKYS R  T  + M  Q
Sbjct: 288 LRELCPNVSISTDIIVAFPGESEKDFEETMDVLEKVRFEQIFSFKYSKRPLTKAATMPNQ 347

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           +DE   + RL  LQ +  E           +  +VL E+  +    + GR+     V + 
Sbjct: 348 IDEETASRRLSTLQNRHSEILDEIVKKQENKTFKVLFEEL-RAGNSIAGRTDNNFLVQVE 406

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                +G   +V+IT+ K   LYGE+V
Sbjct: 407 GSEELLGQFKEVKITNAKRMVLYGEIV 433


>gi|315452658|ref|YP_004072928.1| (Dimethylallyl)adenosine tRNA methylthiotransferase-MiaB
           [Helicobacter felis ATCC 49179]
 gi|315131710|emb|CBY82338.1| (Dimethylallyl)adenosine tRNA methylthiotransferase-MiaB
           [Helicobacter felis ATCC 49179]
          Length = 434

 Score =  268 bits (684), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 150/443 (33%), Positives = 250/443 (56%), Gaps = 19/443 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ ++++ GC MN  DS  +       GYE      +ADLI+LNTC +REK   K++S +
Sbjct: 6   KKVYIETMGCAMNTRDSQHLLSELHKVGYEESGDPKEADLILLNTCSVREKPERKLFSEI 65

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           G    +K +  K G      V GC A   G +IL+++P V+ V+G +   ++ +++ R +
Sbjct: 66  GHFAKIKKAGAKIG------VCGCSASHMGAQILQKAPSVDFVLGARNVSKISQIIHRPK 119

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
             +  +D D S          V G  + K  + A + I  GCDK C++C+VP+TRG EIS
Sbjct: 120 AVEVALDHDES--------HYVFG--HSKSALQALINISIGCDKHCSYCIVPHTRGKEIS 169

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-GLDGEKCTFSDLLYSLSEIKGLVRL 263
             +  ++ EAR  ++NG  EI LLGQNVN +  +   D  K TF+ LL SL +I+GL R+
Sbjct: 170 IPMDLILQEARYRVENGAKEIILLGQNVNNYGARFSTDHPKVTFTTLLESLCQIEGLKRI 229

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+T+ HP  M D  ++       +   +H+P+QSGS+ ILK+M R +T   Y   I+++R
Sbjct: 230 RFTSPHPLHMDDAFLECFAKHPQICKSIHIPLQSGSNAILKAMRRGYTKEWYLNRIEKLR 289

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           S+ PD+ I +D IVGFPGE++ DF  TMD+++++ +   +SF YSPR  T  ++   QV 
Sbjct: 290 SLVPDVGIGTDIIVGFPGESEVDFEHTMDVLEQVRFDTMYSFIYSPRPLTSAASWDHQVP 349

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
             +  + L  LQ++ +E         +G++ +VL+E    ++G+  GRS   + +   ++
Sbjct: 350 YEIAQQNLSRLQQRHQEILEQKAKTQLGKVYQVLVE--SIKEGRAQGRSDQGRLLSFEAE 407

Query: 444 NHNIGDIIKVRITDVKISTLYGE 466
              +GD+++V +      +L G+
Sbjct: 408 GVQVGDLVEVEVRAHHRGSLQGQ 430


>gi|149277185|ref|ZP_01883327.1| 2-methylthioadenine synthetase [Pedobacter sp. BAL39]
 gi|149232062|gb|EDM37439.1| 2-methylthioadenine synthetase [Pedobacter sp. BAL39]
          Length = 482

 Score =  268 bits (684), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 165/453 (36%), Positives = 256/453 (56%), Gaps = 15/453 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ +++SYGCQMN  DS  +  +   QG+E      +AD++ +NTC IRE A ++V + L
Sbjct: 31  RKLYIESYGCQMNFADSEIVASILKDQGFETTGDYKEADVVFINTCSIRENAEQRVRNRL 90

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            +    K    K    L+V V GC+A+    + L    +V+VVVGP  Y  LP+L+ +  
Sbjct: 91  SQFSAEKRKNPK----LVVGVLGCMAERLKSKFLEEEKLVDVVVGPDAYRDLPQLIGQVE 146

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G + ++   S E+ +  +S V    N   G+TAF++I  GCD  C+FCVVP+TRG E S
Sbjct: 147 EGHKAINVLLSREETYADISPVRLNGN---GITAFISIMRGCDNMCSFCVVPFTRGRERS 203

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK-----CTFSDLLYSLSEIKG 259
           R    ++ EA+ L+D G  E+TLLGQNV++++ KG D E+       F+ LL  ++ +  
Sbjct: 204 RDPHSILAEAQDLVDKGYKEVTLLGQNVDSYKWKGADAEEGAEIEVNFAQLLEKVALLSP 263

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
            +R+R++TSHP+D++D ++      D +  Y+HLPVQSGS R+L+ MNR +T   Y   +
Sbjct: 264 ELRVRFSTSHPKDITDEVLYTIAKYDNICNYIHLPVQSGSSRVLELMNRTYTREWYINRV 323

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
           D IR + P  AISSD I GF  ET+++ + T+ ++D +GY  AF+F YS R GT  +  L
Sbjct: 324 DAIRRIIPGCAISSDIIAGFCTETEEEHQETLSMMDYVGYDFAFTFSYSERPGTLAARKL 383

Query: 380 E-QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQS 437
           E  + E VK  RL  +  K +E  +      VG +  +L+E   K+  K   GR+     
Sbjct: 384 EDDIPEPVKKRRLAEILLKQQETSLYRLQQFVGTMQRILVEGTSKKSDKDFCGRNDQNAM 443

Query: 438 VVLNS-KNHNIGDIIKVRITDVKISTLYGELVV 469
           VV  + +    G  + V +     +TL G +VV
Sbjct: 444 VVFPAVEGVKAGTYVNVHVDRCTSATLLGTVVV 476


>gi|327450799|gb|EGE97453.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes
           HL087PA3]
 gi|328754218|gb|EGF67834.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes
           HL087PA1]
          Length = 494

 Score =  268 bits (684), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 149/399 (37%), Positives = 233/399 (58%), Gaps = 17/399 (4%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGY---ERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           + V +YGCQMNV+DS R+  +    GY    R +++  AD++V NTC +RE A  ++Y  
Sbjct: 14  YRVVTYGCQMNVHDSERIAGLLEEAGYVPDPRTDTLAPADVVVFNTCAVRENADNRLYGT 73

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LG +  +K++       + + V GC+AQ + + ++ R+P V+VV G      LP LL+RA
Sbjct: 74  LGHMAAVKSAHPG----MQLAVGGCMAQKDKDTVVARAPWVDVVFGTHNVGSLPVLLKRA 129

Query: 144 RFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           R      V+ + S+      L        R    +A+++I  GC+  CTFC+VP  RG E
Sbjct: 130 RHNATAQVEIEESLVTFPSNLPA-----RRDSAYSAWVSISVGCNNTCTFCIVPQLRGKE 184

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLV 261
             R   +++ E R L++ GV EITLLGQNVN++   G+  G++  F+ LL +   I GL 
Sbjct: 185 TDRRPGEILSEIRALVNEGVQEITLLGQNVNSY---GVQFGDRGAFAKLLRACGNIDGLE 241

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+T+ HP   +D +I+A  +   +MP LH+P+QSGSD +L+ M R + + ++  I+DR
Sbjct: 242 RVRFTSPHPAAFTDDVIEAMAETPNVMPSLHMPLQSGSDEVLRRMRRSYRSTKFLGILDR 301

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R   P  AI++D IVGFPGETD DF  TM +V++  ++ AF+F+YS R  T    M +Q
Sbjct: 302 VREAIPHAAITTDIIVGFPGETDKDFAETMRIVEESRFSAAFTFQYSIRPNTSAGVMKDQ 361

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
           V + V  ER   L + + +     N A VG+ +EV+  +
Sbjct: 362 VPKPVVQERYEQLVELVDDIAWQENKAQVGRAVEVMFAQ 400


>gi|257068238|ref|YP_003154493.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Brachybacterium faecium
           DSM 4810]
 gi|256559056|gb|ACU84903.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Brachybacterium faecium
           DSM 4810]
          Length = 533

 Score =  268 bits (684), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 154/405 (38%), Positives = 244/405 (60%), Gaps = 27/405 (6%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDA-----DLIVLNTCHIREKAAEKVY 81
           + V+++GCQMNV+DS R+  M    GY    +  DA     D++V NTC +RE AA K+Y
Sbjct: 27  YQVRTFGCQMNVHDSERLTGMLEDSGYVAAPADADARKGEVDVLVFNTCAVRENAANKLY 86

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LG +R  K++       + + V GC+AQ +   I+ R+P V+VV G      LP LL+
Sbjct: 87  GTLGGLRPGKDANPG----MQIAVGGCLAQKDRAAIVERAPWVDVVFGTHNIGSLPVLLD 142

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKR--GVTAFLTIQEGCDKFCTFCVVPYTR 199
           RAR      + +  VE   E L +       +R     A+++I  GC+  CTFC+VP  R
Sbjct: 143 RARH-----NAEAQVE-ILESLEVFPSTLPTRRESAYAAWVSISVGCNNTCTFCIVPSLR 196

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIK 258
           G E  R    V+ E R ++D+G  E+TLLGQNVN++   G++ G++  F+ LL +  EI 
Sbjct: 197 GKEKDRRPGDVLAEVRDVVDSGAIEVTLLGQNVNSY---GVEFGDRGAFAKLLRACGEID 253

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           GL R+R+T+ HP   +D +I A  +   +MP LH+P+QSGSD++L+ M R + + ++  I
Sbjct: 254 GLERVRFTSPHPAMFTDDVIDAMAETPNVMPQLHMPLQSGSDKVLRRMRRSYRSRKFLGI 313

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           ++R+R   P+ AI++D IVGFPGET+DDF+ T+++V+   ++ AF+F+YS R GTP + M
Sbjct: 314 LERVRERIPEAAITTDIIVGFPGETEDDFQRTLEVVEASRFSSAFTFQYSIRPGTPAATM 373

Query: 379 LEQVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
             Q+ + V   + ERL+ LQ ++  ++   N A  G+ +E+L+ +
Sbjct: 374 DGQLPKEVVQERFERLIELQDRITFEE---NRALEGRAVEILVAE 415


>gi|281357828|ref|ZP_06244314.1| RNA modification enzyme, MiaB family [Victivallis vadensis ATCC
           BAA-548]
 gi|281315775|gb|EFA99802.1| RNA modification enzyme, MiaB family [Victivallis vadensis ATCC
           BAA-548]
          Length = 446

 Score =  268 bits (684), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 159/455 (34%), Positives = 250/455 (54%), Gaps = 22/455 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + F+K+YGCQMN  DS     M    G+  V+S + AD+++ NTC +RE+A  K    +G
Sbjct: 2   KIFIKTYGCQMNERDSEAFAGMLVEAGHTMVDSEEQADVLLFNTCSVREQAERKAIGKIG 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            ++ LK        +L++   GC+AQ  G ++L+  P ++ V+G    + L  L+E  R 
Sbjct: 62  FMKKLKAKH----PELIIGAMGCMAQRLGNDLLKELPHLDFVLGTGQLHTLVPLIESIRA 117

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRK---RGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            +R V    S+ +    L+ +   Y      R   A + I  GC++FC++C+VPY RG E
Sbjct: 118 DRRQV---ASLNESEAVLTGMGSHYRPAGDVRNWHAQIAITRGCNRFCSYCIVPYVRGRE 174

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE-------KCTFSDLLYSLS 255
           ISR    VV EAR+L+  G  E+ LLGQNV A+   GL G           F++LL  L 
Sbjct: 175 ISRDPGDVVREARELVAAGARELMLLGQNVAAY---GLGGNTNPPEDGSSPFAELLEELD 231

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
            I  L+R+R+T+ +P   +  LI A      +   +HLP+QSGSDR+LK+MNR++T   Y
Sbjct: 232 RIPELLRIRFTSPYPTYFNGRLIDAIAKSRTVCHNIHLPLQSGSDRMLKAMNRQYTHDSY 291

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
            ++++RIR+  PD+  S+D IVGFPGETD DF+ T ++++ +G+  +F FKYSPR G   
Sbjct: 292 LEVVNRIRAAMPDVTFSTDVIVGFPGETDGDFKQTREVMNTVGFDNSFIFKYSPRPGARS 351

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPW 434
           + + + V + VK ER   L   L+ +  +F    +G   E+L+E    +   +  GR+  
Sbjct: 352 AALADSVPQEVKEERNQILLNDLKLRVEAFLKQQIGTTQEILVEGVSPRNPARWCGRTGT 411

Query: 435 LQSVVLNSKNH-NIGDIIKVRITDVKISTLYGELV 468
            + +    +     G +  V +T     +L+GELV
Sbjct: 412 NRLIHFEPEEGLQAGTLRSVTVTRAGSVSLFGELV 446


>gi|223040820|ref|ZP_03611086.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Campylobacter rectus
           RM3267]
 gi|222877919|gb|EEF13034.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Campylobacter rectus
           RM3267]
          Length = 436

 Score =  268 bits (684), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 159/447 (35%), Positives = 251/447 (56%), Gaps = 20/447 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRM-EDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ F+++ GC MNV DS  +  ++   + YE   ++ DADLI++NTC +REK   K++S 
Sbjct: 6   KKLFIQTLGCAMNVRDSEHIIAELSQKEDYELTGNIADADLILINTCSVREKPVHKLFSE 65

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G     K +  K G      V GC A   G+EI +R+P V+ V+G +   ++   ++  
Sbjct: 66  VGAFEKAKKNGAKIG------VCGCTASHLGDEIFKRAPYVDFVLGARNVSKISTAVKTP 119

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           +F    ++ D S E  F        G  R     + + I  GCDK CT+C+VP+TRG EI
Sbjct: 120 KFISTDINHDES-EYAF--------GEFRGSPYKSHINISIGCDKKCTYCIVPHTRGDEI 170

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG--EKCTFSDLLYSLSEIKGLV 261
           S   + ++ E +K  ++G  EI LLGQNVN + GK   G  EK  FSDLL  +SEIKG+ 
Sbjct: 171 SIPANLILREVKKAAESGAKEIFLLGQNVNNY-GKRFSGAHEKIDFSDLLVKISEIKGVE 229

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+T+ HP  M D  ++       +   +H+P+QSG+ ++L+ M R +T   +     +
Sbjct: 230 RIRFTSPHPLHMDDKFLEIFSQNPKICKSMHMPLQSGNTKVLREMKRGYTKEWFLDRAAK 289

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R++ P+++IS+D IV FPGE+D++F  TMD+++K+ + Q FSFKYSPR  T  +    Q
Sbjct: 290 LRAMCPEVSISTDIIVAFPGESDEEFEDTMDVLEKVRFEQIFSFKYSPRPLTKAAEFTNQ 349

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           + +++ + RL  LQ +  E       A   +I +V  E+  +  G + GRS     V + 
Sbjct: 350 IPDSLASARLTRLQSRHNEILDEIVAAQKSKIFDVYFEEL-RANGGVAGRSFNNFLVQVA 408

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                +G  +KVR+ D K   LYGELV
Sbjct: 409 GSEELLGKTLKVRVNDPKRMVLYGELV 435


>gi|320536571|ref|ZP_08036594.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Treponema phagedenis
           F0421]
 gi|320146584|gb|EFW38177.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Treponema phagedenis
           F0421]
          Length = 455

 Score =  267 bits (683), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 154/458 (33%), Positives = 259/458 (56%), Gaps = 35/458 (7%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           +F ++YGCQMNV +S  +E +   +G+E+    D  DL+++NTC +R  A  +V+  LG 
Sbjct: 3   YFFETYGCQMNVAESASVEQLLLKRGWEKAEKADVCDLLIINTCSVRITAETRVFGRLGL 62

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER--AR 144
              LK  R        +++ GC+A+   ++I +  P ++ VVG     +   + +   ++
Sbjct: 63  FSALKKKRA-----FSIILMGCMAERLHDKIKKDFPRLDYVVGMFERNQFTAIFKEIESK 117

Query: 145 FGKRVVDTDYSVED---------KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
             K    +++S ED          F   S ++G +       +F+ I  GC+ FCT+C+V
Sbjct: 118 LNKTDYHSEFSGEDFLEKPVSGYHFAESSYIEGAFQ------SFIPIMNGCNNFCTYCIV 171

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
           PY RG EISRSL  ++ E  +L + GV EITLLGQNVN++RGK  +G+  TF +LL  ++
Sbjct: 172 PYVRGREISRSLEAILAEVEELSEKGVREITLLGQNVNSYRGKDFEGKLITFPELLRRVA 231

Query: 256 ---EIKGLVR-LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
              E K  +R +R+ +SHP+D SD LI    +   +   +HLPVQ GS+ +LK MNR +T
Sbjct: 232 RVCEKKDSIRWIRFMSSHPKDFSDELITVIAEEPRVCKLIHLPVQHGSNAVLKRMNRSYT 291

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
              Y  ++D++R+  PD A+S+D ++GFPGE+++DF  T+DL+ ++ +  AF + Y+PR 
Sbjct: 292 REHYLSLVDKLRTKVPDSALSTDILIGFPGESEEDFELTLDLMRQVQFDSAFMYHYNPRE 351

Query: 372 GTPGSNMLEQVDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GK 427
           GT   +  +++ + V+  RL   + LQ K   +++      V  I+ VL+E   +    +
Sbjct: 352 GTRAYDFPDRIPDAVRIARLQQVIDLQMKTSAEKMRNR---VNHILHVLVESRSRNNPDE 408

Query: 428 LVGRSPWLQSVVLNSKN--HNIGDIIKVRITDVKISTL 463
           L G + + +  VL   +  ++IG  +KV+I  V+  T 
Sbjct: 409 LFGHTEFGEMAVLTGADPENSIGHFVKVQIQSVQGKTF 446


>gi|315638402|ref|ZP_07893580.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Campylobacter upsaliensis
           JV21]
 gi|315481530|gb|EFU72156.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Campylobacter upsaliensis
           JV21]
          Length = 433

 Score =  267 bits (683), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 157/446 (35%), Positives = 248/446 (55%), Gaps = 18/446 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRM-EDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ F+++ GC MNV DS  +  ++   + Y     + +ADLI++NTC +REK   K++S 
Sbjct: 4   KKLFIQTLGCAMNVRDSEHIIAELTQKENYSLTEDIKEADLILINTCSVREKPVHKLFSE 63

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G    +K    K G      V GC A   GEEI RR+P V+ V+G +   ++ + ++  
Sbjct: 64  VGGFEKVKKKGAKIG------VCGCTASHLGEEIFRRAPYVDFVLGARNISKITQAVKTP 117

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           +F    VD DY  E +F      +  Y       +++ I  GCDK CT+C+VP+TRG EI
Sbjct: 118 KFVG--VDLDYD-ESEFAFSDFRNSPYK------SYINISIGCDKHCTYCIVPHTRGDEI 168

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG-EKCTFSDLLYSLSEIKGLVR 262
           S     + +EA+K ++ G  EI LLGQNVN +  +  +  +K  FSDLL +LSEI+ L R
Sbjct: 169 SIPFELIYNEAKKAVEKGAKEIFLLGQNVNNYGKRFRNAHKKMDFSDLLNALSEIENLRR 228

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+T+ HP  M D  ++     + +   +H+P+QSGS  ILK+M R ++   Y     ++
Sbjct: 229 IRFTSPHPLHMDDKFLQTFSQNEKICKAMHMPLQSGSSEILKAMKRGYSKEWYLDRALKL 288

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R +  D++IS+D IV FPGE++ DF  T+D+++K+ + Q FSFKYS R  T  + M  Q+
Sbjct: 289 RELCKDVSISTDIIVAFPGESEKDFEDTLDVLEKVRFEQIFSFKYSKRPLTKAATMQGQI 348

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
            E++ + RL  LQ +  E           Q  EVL E+  +    + GR+     V +  
Sbjct: 349 PEDIASRRLSFLQNRHAEILDEITKKQENQTFEVLFEEL-RANNAVAGRTDNNFLVQIQG 407

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
               +G + +V+IT+ K   LYGE+V
Sbjct: 408 SEEMLGTMKQVKITNAKRMVLYGEIV 433


>gi|313679838|ref|YP_004057577.1| tRNA-i(6)a37 thiotransferase enzyme miab [Oceanithermus profundus
           DSM 14977]
 gi|313152553|gb|ADR36404.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Oceanithermus profundus
           DSM 14977]
          Length = 446

 Score =  267 bits (683), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 159/448 (35%), Positives = 253/448 (56%), Gaps = 35/448 (7%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           +YGCQMN YD+  +     S G   V+++++A+ +++NTC +R K  EKV S LG++R  
Sbjct: 10  TYGCQMNEYDTHLVASELASIGAAFVDTVEEANFVLVNTCAVRGKPVEKVKSLLGQLRKE 69

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
           K  R KE    L+ + GC+A  E  + + R   V+V++G    +++ E L  A+ G    
Sbjct: 70  KERR-KE--PFLIGMMGCLASLEEGQAIARKFGVDVLLGAGAIHKIAEAL--AQTG---- 120

Query: 151 DTDYSVEDKFERLSIVDGGYNRK---------RG-VTAFLTIQEGCDKFCTFCVVPYTRG 200
                        +  D G+ R+         RG ++AF+T+  GCD  CT+CVVP TRG
Sbjct: 121 -------------AFWDVGFYREIDEVVPPPPRGTLSAFVTLIRGCDHRCTYCVVPRTRG 167

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR    ++ E  +L++ G+ E+TLLGQNVN++ GK  D     F+DL+  ++ + G+
Sbjct: 168 PEVSRHPDLILREVEQLLEAGIVEVTLLGQNVNSY-GKD-DPAYPDFADLIRRVAAL-GV 224

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            RLR+ TSHP + SD +++A  +   +  Y+HLPVQ+GSDR+L+ M R +    Y + + 
Sbjct: 225 RRLRFVTSHPMNFSDRIVEAIAETPAVGQYVHLPVQAGSDRVLRRMAREYRRDYYLERVA 284

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           R+R   PD+ +S+D IVGFPGET++DF+ T+DL D++G+  A+ F YS R GTP     E
Sbjct: 285 RLREALPDLVLSTDIIVGFPGETEEDFQQTLDLYDEVGFDAAYMFIYSARPGTPSYERFE 344

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440
            +   VK ERL  L +K +E  +  N A VG+ +EVL+    KE   + G       V+L
Sbjct: 345 DLPREVKVERLQRLIEKQKEWSLRRNQAWVGREVEVLVRGPAKEAHWVEGHDQSNHPVLL 404

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
            +    +  + +  +       L+G++ 
Sbjct: 405 PASEAPVAGLYRATVEQATPHLLFGKVA 432


>gi|237751475|ref|ZP_04581955.1| 2-methylthioadenine synthetase [Helicobacter bilis ATCC 43879]
 gi|229372841|gb|EEO23232.1| 2-methylthioadenine synthetase [Helicobacter bilis ATCC 43879]
          Length = 444

 Score =  267 bits (683), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 160/449 (35%), Positives = 255/449 (56%), Gaps = 21/449 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRM-EDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + ++++ GC MNV DS  +  ++   +GY    ++ +ADLI++NTC +REK  +K++S +
Sbjct: 9   KLYIETLGCAMNVRDSEHIIAELQDKEGYSLTANIQEADLILINTCSVREKPEQKLFSEI 68

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           G+    K    K G      V GC A A G EI+++SP V+ V+G +   ++  ++ + +
Sbjct: 69  GQFAKHKKDGAKIG------VCGCTASAMGHEIIKKSPHVDFVLGARNISKITSVIHKPK 122

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
                V+ D S +D     S      +++ G  A L I  GCDK C +C+VP+TRG EIS
Sbjct: 123 ----AVEIDTSYDDSTYVFS-----DSKQSGFKALLNISIGCDKKCAYCIVPFTRGKEIS 173

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-GLDGEKCTFSDLLYSLSEIKGLVRL 263
                +  EA KL+ NGV EI LLGQNVN +  +     EK  F+ LL  LS+I GL R+
Sbjct: 174 IPFDLLYQEANKLVKNGVKEILLLGQNVNNYGVRFSTPHEKIDFTTLLRELSKIDGLERI 233

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+T+ HP  M+D  +        +   +H+P+QSGS++ILKSM R +T   Y   I  ++
Sbjct: 234 RFTSPHPLHMNDSFLDEFASNPKICKSIHIPLQSGSNKILKSMKRGYTQEWYLDRIAYLK 293

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ-- 381
              P++ IS+D IVGFPGE DDDF+ TM +++ + +   +SF YSPR  T   +  ++  
Sbjct: 294 KQSPNVGISTDIIVGFPGENDDDFKETMSVLESVRFDTMYSFIYSPRPNTLSHSWGDKDS 353

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV--GRSPWLQSVV 439
           V + V  ERL  LQ++ RE     +   +G+I +VLI+ + K   +    GRS   + + 
Sbjct: 354 VPKEVAKERLAILQQRHREILQENSQKELGKIHKVLIDSNKKSLSETFSEGRSDTNRLIR 413

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
           + ++  ++G I+ + IT V  STL+G+ +
Sbjct: 414 IENEFIDMGAIVDIEITKVVGSTLFGKSI 442


>gi|57242309|ref|ZP_00370248.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Campylobacter upsaliensis
           RM3195]
 gi|57016989|gb|EAL53771.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Campylobacter upsaliensis
           RM3195]
          Length = 433

 Score =  267 bits (683), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 157/446 (35%), Positives = 248/446 (55%), Gaps = 18/446 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRM-EDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ F+++ GC MNV DS  +  ++   + Y     + +ADLI++NTC +REK   K++S 
Sbjct: 4   KKLFIQTLGCAMNVRDSEHIIAELTQKENYSLTEDIKEADLILINTCSVREKPVHKLFSE 63

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G    +K    K G      V GC A   GEEI RR+P V+ V+G +   ++ + ++  
Sbjct: 64  VGGFEKVKKKGAKIG------VCGCTASHLGEEIFRRAPYVDFVLGARNISKITQAVKTP 117

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           +F    VD DY  E +F      +  Y       +++ I  GCDK CT+C+VP+TRG EI
Sbjct: 118 KFVG--VDLDYD-ESEFAFSDFRNSPYK------SYINISIGCDKHCTYCIVPHTRGDEI 168

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG-EKCTFSDLLYSLSEIKGLVR 262
           S     + +EA++ ++ G  EI LLGQNVN +  +  +  +K  FSDLL SLSEI+ L R
Sbjct: 169 SIPFELIYNEAKRAVEKGAKEIFLLGQNVNNYGKRFRNAHKKMDFSDLLNSLSEIENLRR 228

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+T+ HP  M D  ++     + +   +H+P+QSGS  ILK+M R ++   Y     ++
Sbjct: 229 IRFTSPHPLHMDDKFLQTFSQNEKICKAMHMPLQSGSSEILKAMKRGYSKEWYLDRALKL 288

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R +  D++IS+D IV FPGE++ DF  T+D+++K+ + Q FSFKYS R  T  + M  Q+
Sbjct: 289 RELCKDVSISTDIIVAFPGESEKDFEDTLDVLEKVRFEQIFSFKYSKRPLTKAATMQGQI 348

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
            E++ + RL  LQ +  E           Q  EVL E+  +    + GR+     V +  
Sbjct: 349 PEDIASRRLSFLQNRHAEILDEITKKQENQTFEVLFEEL-RANNAVAGRTDNNFLVQIQG 407

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
               +G + +V+IT+ K   LYGE+V
Sbjct: 408 SEEMLGTMKQVKITNAKRMVLYGEIV 433


>gi|284035911|ref|YP_003385841.1| RNA modification enzyme, MiaB family [Spirosoma linguale DSM 74]
 gi|283815204|gb|ADB37042.1| RNA modification enzyme, MiaB family [Spirosoma linguale DSM 74]
          Length = 513

 Score =  267 bits (683), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 167/481 (34%), Positives = 259/481 (53%), Gaps = 44/481 (9%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +R +++SYGCQMN  DS  +  +  + GY   +S D+AD+I LNTC IR+ A +KV   L
Sbjct: 38  KRLYIESYGCQMNFADSEIVAAVMRNAGYATTSSADEADVIFLNTCAIRDNAEQKVRHRL 97

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             +  LK    ++  +LLV + GC+A+    ++L    +V++V GP  Y  +P+L+E A 
Sbjct: 98  KHLTGLK----RQKPELLVGMLGCMAERLKTKLLEEEKVVDIVAGPDAYRDIPKLVEEAE 153

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G++ V+   S E+ +  +S +    N   GVTAF++I  GCD  C+FCVVP+TRG E S
Sbjct: 154 SGQKAVNVFLSREETYADISPIRLNSN---GVTAFVSIMRGCDNMCSFCVVPFTRGRERS 210

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-GLDGEKC------------------ 245
           R    +V EA+ L D G  E+TLLGQNV++++ + G+  E+                   
Sbjct: 211 RDPFSIVREAQDLFDQGYREVTLLGQNVDSYKWELGVRSEELGVADRTGRPASANMDASA 270

Query: 246 ---------------TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY 290
                          TF+ LL  +++I   +R+R++TSHP+D++D ++      D +  Y
Sbjct: 271 TPNSSLLTTNTNTTTTFAHLLEMVAQIHPDLRVRFSTSHPKDITDDVLHTMARYDNICNY 330

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR-PDIAISSDFIVGFPGETDDDFRA 349
           +HLP QSG+ R+LK MNR +    Y   IDRIR +   D  IS+D I GF  ET+++ + 
Sbjct: 331 IHLPAQSGNSRVLKLMNRTYDRPWYIGKIDRIREILGEDCGISTDMISGFCTETEEEHQD 390

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGT-PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDA 408
           ++ L+D + Y  A+ F YS R GT       + + E+VK  RL  +  +        N  
Sbjct: 391 SLSLMDYVHYDYAYMFAYSERPGTLAAKKYADDIPEDVKKRRLNEIIARQLAHSAERNQR 450

Query: 409 CVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
            +GQ+  VLIE   K     L GR+   + VV    +H  G  + V +T+   +TL GE+
Sbjct: 451 HIGQVQRVLIEGPSKRSDDFLCGRNDQNKMVVFPKGDHQKGQYVNVLVTECTSATLRGEV 510

Query: 468 V 468
           V
Sbjct: 511 V 511


>gi|88597143|ref|ZP_01100379.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Campylobacter jejuni
           subsp. jejuni 84-25]
 gi|121613595|ref|YP_001000165.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Campylobacter jejuni
           subsp. jejuni 81-176]
 gi|167005123|ref|ZP_02270881.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Campylobacter jejuni
           subsp. jejuni 81-176]
 gi|218562113|ref|YP_002343892.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Campylobacter
           jejuni subsp. jejuni NCTC 11168]
 gi|123141627|sp|Q0PB55|MIAB_CAMJE RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|229890471|sp|A1VYH4|MIAB_CAMJJ RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|87250048|gb|EAQ73006.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Campylobacter jejuni
           subsp. jejuni 81-176]
 gi|88190832|gb|EAQ94805.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Campylobacter jejuni
           subsp. jejuni 84-25]
 gi|112359819|emb|CAL34606.1| putative tRNA 2-methylthioadenosine synthase [Campylobacter jejuni
           subsp. jejuni NCTC 11168]
 gi|284925725|gb|ADC28077.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Campylobacter jejuni
           subsp. jejuni IA3902]
 gi|315928214|gb|EFV07531.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Campylobacter jejuni
           subsp. jejuni DFVF1099]
 gi|315930005|gb|EFV09148.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Campylobacter jejuni
           subsp. jejuni 305]
          Length = 433

 Score =  267 bits (683), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 161/447 (36%), Positives = 248/447 (55%), Gaps = 20/447 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRM-EDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ F+++ GC MNV DS  M  ++   + Y     + +ADLI++NTC +REK   K++S 
Sbjct: 4   KKLFIQTLGCAMNVRDSEHMIAELTQKENYALTEDIKEADLILINTCSVREKPVHKLFSE 63

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G    +K    KEG    + V GC A   G EI +R+P V+ V+G +   ++ + ++  
Sbjct: 64  VGGFEKVK----KEGAK--IGVCGCTASHLGNEIFKRAPYVDFVLGARNISKITQAIKTP 117

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           +F    VD DY  E +F      +  Y       +++ I  GCDK CT+C+VP+TRG EI
Sbjct: 118 KFMG--VDIDYD-ESEFAFADFRNSIYK------SYINISIGCDKHCTYCIVPHTRGDEI 168

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE--KCTFSDLLYSLSEIKGLV 261
           S   + +  EA+K I+ G  EI LLGQNVN + GK    E  K  FSDLL  LS I+GL 
Sbjct: 169 SIPFNIIYKEAQKAIEKGAKEIFLLGQNVNNY-GKRFRNEHKKMDFSDLLEELSTIEGLE 227

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+T+ HP  M D  ++   +   +   +H+P+QSGS  ILK+M R +T   Y     +
Sbjct: 228 RIRFTSPHPLHMDDKFLEVFANNPKVCKSMHMPLQSGSSEILKAMKRGYTKEWYLNRALK 287

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R + P+++IS+D IV FPGE++ DF  T+D+++K+ + Q FSFKYS R  T  + M  Q
Sbjct: 288 LRELCPNVSISTDIIVAFPGESEKDFEETVDVLEKVRFEQIFSFKYSKRPLTKAATMPNQ 347

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           +DE + + RL  LQ +  E           +  +VL E+  +    + GR+     V + 
Sbjct: 348 IDEEIASRRLSTLQNRHSEILDKIVKKQENKTFKVLFEEL-RAGNSIAGRTDNNFLVQVE 406

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                +G   +V+IT+ K   LYGE+V
Sbjct: 407 GSEELLGQFKEVKITNAKRMVLYGEIV 433


>gi|297626490|ref|YP_003688253.1| 2-methylthioadenine synthetase MiaB protein [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
 gi|296922255|emb|CBL56827.1| 2-methylthioadenine synthetase MiaB protein [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
          Length = 504

 Score =  267 bits (682), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 154/428 (35%), Positives = 243/428 (56%), Gaps = 26/428 (6%)

Query: 15  SQIVDQCIVPQRFF-VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD-----DADLIVLN 68
           +  VD    P R + V +YGCQMN +DS R+  +    GY  + + +      AD++V N
Sbjct: 7   TPAVDAPSAPARSYRVITYGCQMNAHDSERIAGLLDQAGYVALPAHEHTEIGPADVVVFN 66

Query: 69  TCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVV 128
           TC +RE A  ++Y  LGR+   K    KE   + + V GC+AQ + + I+ ++P V+VV 
Sbjct: 67  TCAVRENADNRLYGNLGRMATFK----KEHPGMQIAVGGCMAQKDRDLIVSKAPWVDVVF 122

Query: 129 GPQTYYRLPELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCD 187
           G      LP LLERAR  +   V+   +++     L       +R+    A+++I  GC+
Sbjct: 123 GTNNVGSLPILLERARIEQASQVEITEALQTFPSNLPT-----HRELDYAAWVSISVGCN 177

Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCT 246
             CT+C+VP  RG E  R    ++ E + L+D GV EITLLGQNVN +   G++ G++  
Sbjct: 178 NTCTYCIVPALRGKETDRRPGDILAEIQMLVDQGVQEITLLGQNVNTY---GVEFGDRGA 234

Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306
           F+ LL +  +I GL R+R+T+ HP   +D +I+A  +   +M  LH+P+QSGSD +L++M
Sbjct: 235 FAKLLRACGDITGLERVRFTSPHPAAFTDDVIEAMAETPNVMHQLHMPLQSGSDHVLRAM 294

Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
            R + +  +  I++R+R+  PD AIS+D IVGFPGETD+DF  T+  V +  +  A++F+
Sbjct: 295 RRSYRSERFHGILERVRAAMPDAAISTDIIVGFPGETDEDFEQTLQAVRRSRFTNAYTFQ 354

Query: 367 YSPRLGTPGSNMLEQVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK 423
           YS R GTP   M  QV  +V   + ERL+ +Q ++  ++   N   +G  +EV+      
Sbjct: 355 YSIRPGTPAGEMANQVPHDVVQERYERLVAVQDEISWEE---NKLLLGANVEVMFTTGDG 411

Query: 424 EKGKLVGR 431
            K +   R
Sbjct: 412 RKDQATDR 419


>gi|317500218|ref|ZP_07958449.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|316898389|gb|EFV20429.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Lachnospiraceae bacterium
           8_1_57FAA]
          Length = 483

 Score =  267 bits (682), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 154/409 (37%), Positives = 239/409 (58%), Gaps = 20/409 (4%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           F V ++GCQMN  DS ++  +    GY      + AD ++ NTC +RE A ++VY  LG+
Sbjct: 47  FCVTTFGCQMNARDSEKLVGILEQIGYVEEPDEEKADFVIYNTCTVRENANQRVYGRLGQ 106

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQ-AEGEEILRRS-PIVNVVVGPQTYYRLPELL-ERA 143
           +  +K    K    +++ + GC+ Q  E  E L++S   V+++ G    Y+  EL+  R 
Sbjct: 107 LGRIK----KTNPHMMIALCGCMMQEPEVVEKLKKSYRFVDIIFGTHNIYKFAELIVSRM 162

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             GK V+D  +   DK     + D    RK    + + I  GC+ FC++C+VPY RG E 
Sbjct: 163 NSGKMVIDI-WKDTDKI----VEDLPSERKYPFKSGVNIMFGCNNFCSYCIVPYVRGRER 217

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR    ++ E  +L ++GV E+ LLGQNVN++ GK L+    TF+ LL  + +I  + R+
Sbjct: 218 SRDPKAIIREIERLAEDGVVEVMLLGQNVNSY-GKTLE-HPMTFAQLLREIEKIDKIERI 275

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+ TSHP+D+SD LI+       +  +LHLPVQSGS RIL+ MNRR+T   Y ++++++R
Sbjct: 276 RFMTSHPKDLSDELIEVMAQSKKICRHLHLPVQSGSTRILEKMNRRYTKEHYLKLVEKLR 335

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              PDI++++D IVGFPGET++DFR T+D+V K+ Y  AF+F YS R GTP + M +Q+ 
Sbjct: 336 KAIPDISLTTDIIVGFPGETEEDFRETLDVVRKVQYDSAFTFIYSKRTGTPAAAMEDQIS 395

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACV---GQIIEVLIEKHGKEKGKLV 429
           ++V  +R   L   L E Q   +  C    G +  VL+E   +   +L+
Sbjct: 396 DDVVKDRFGRL---LEEVQTISSKMCSRHEGTVQRVLVESCNEHDERLM 441


>gi|297566522|ref|YP_003685494.1| RNA modification enzyme, MiaB family [Meiothermus silvanus DSM
           9946]
 gi|296850971|gb|ADH63986.1| RNA modification enzyme, MiaB family [Meiothermus silvanus DSM
           9946]
          Length = 440

 Score =  267 bits (682), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 162/444 (36%), Positives = 253/444 (56%), Gaps = 29/444 (6%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           +YGCQMN YD+  ++    S G E V++  +AD +++NTC +R K  EKV S LG +R  
Sbjct: 7   TYGCQMNEYDTHLVKSELASLGAEFVDTWQEADFVLVNTCAVRGKPVEKVRSLLGELRKE 66

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE-RARFGKRV 149
           K+ R     DL+V + GC+AQ E  + + R   V++++GP     + + LE ++RF +  
Sbjct: 67  KDKR-----DLMVGMMGCLAQLEEGQQIARKFGVDILLGPGALTEIGKALEAKSRFWELS 121

Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209
                  E+    L     G      ++AF++I  GC+  CT+C+VP TRG E+SR    
Sbjct: 122 FR-----EELAHHLPPAPQGQ-----LSAFVSIIRGCNHHCTYCIVPTTRGPEVSRHPDL 171

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSH 269
           ++ E  +L   GV E+TLLGQNVN++ G    G    F++LL  + +I G+ R+++TTSH
Sbjct: 172 ILREIEQLKAAGVVEVTLLGQNVNSY-GNDQPGFP-KFAELLRMVGQI-GIPRIKFTTSH 228

Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ--IIDRIRSVR- 326
           P + +D +I+A  +   +  Y+HLPVQSGS+R+L+ M R     EYR+   +DRIR++R 
Sbjct: 229 PVNFTDEVIRAMAETPQVCEYIHLPVQSGSNRVLRRMGR-----EYRREWYLDRIRAIRE 283

Query: 327 --PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             P++ +S+D IVGFPGET++DF+ T+ L D++GY  A+ F YSPR GTP     + +  
Sbjct: 284 AMPEVVLSTDIIVGFPGETEEDFQETLSLYDQVGYDSAYMFIYSPRPGTPSYKHFQDLPR 343

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
            VK ERL  L +K ++     N   VG+ +EVL+    K+     G S     V++ +  
Sbjct: 344 EVKVERLQRLIEKQKQWSYKQNQRWVGRTLEVLVRGAAKDDSYAEGHSRGNHPVLVLASQ 403

Query: 445 HNIGDIIKVRITDVKISTLYGELV 468
                + +V +       L GE+V
Sbjct: 404 APRPGLYQVVVKQATPHMLLGEVV 427


>gi|254457437|ref|ZP_05070865.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Campylobacterales
           bacterium GD 1]
 gi|207086229|gb|EDZ63513.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Campylobacterales
           bacterium GD 1]
          Length = 433

 Score =  267 bits (682), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 161/450 (35%), Positives = 254/450 (56%), Gaps = 20/450 (4%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRM-EDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++ F+++ GC MN  DS  M   +   +GYE ++   +ADLI++NTC +REK   K++
Sbjct: 1   MSKKLFIETLGCAMNSRDSEHMIAQLTEKEGYEAISDFREADLILINTCSVREKPVSKLF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S LG    + N + K G    + V GC A   GEEI++R+P VN V+G +   ++ E+L 
Sbjct: 61  SELG----IFNKKKKPGAK--IGVCGCTASHLGEEIIKRAPYVNFVLGARNVSKITEVLH 114

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           + +  +  ++ D S E  F+          R     AF+ I  GCDK CT+C+VP TRG 
Sbjct: 115 KDKAVEIDINYDES-EFAFDDF--------RTSPYKAFINISIGCDKACTYCIVPKTRGD 165

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE--KCTFSDLLYSLSEIKG 259
           EIS   + ++ EA + +D+G  EI LLGQNVN + G+   GE  K  FS+LL  LS+I+G
Sbjct: 166 EISIPDALIIREAERAVDSGAKEIFLLGQNVNNY-GRRFSGEHEKVNFSELLRRLSKIEG 224

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           L RLR+T+ HP  M D  I+       +   +H+P+QSGS ++LK M R ++   +   +
Sbjct: 225 LERLRFTSPHPFHMDDEFIEEFASNPKICKSMHMPLQSGSTKVLKDMKRGYSKEWFLNRV 284

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
           +++R+  P ++IS+D IV FPGE+D+DF  ++D++ ++ + Q FSFKYS R  T   +  
Sbjct: 285 EKLRAECPQVSISTDIIVAFPGESDEDFEDSLDVMRQVRFNQIFSFKYSARPETEAEHFT 344

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV 439
             VDE V ++RL  LQ    E     N   +G+   V  E+  K+   + GRS     + 
Sbjct: 345 NTVDEEVASDRLTALQSLNTEIVDEINATSLGKTYRVYFEELIKDYF-VSGRSDNNIVIK 403

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELVV 469
           +   +  +G+   V+IT +  + L GE+V 
Sbjct: 404 VKGSDELLGEFRDVKITSIGRTILTGEVVA 433


>gi|189501144|ref|YP_001960614.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Chlorobium
           phaeobacteroides BS1]
 gi|229890477|sp|B3ENP4|MIAB_CHLPB RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|189496585|gb|ACE05133.1| RNA modification enzyme, MiaB family [Chlorobium phaeobacteroides
           BS1]
          Length = 447

 Score =  267 bits (682), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 158/446 (35%), Positives = 251/446 (56%), Gaps = 20/446 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ +++++GCQMN  D+  +  +   +GY    S + ADL++LNTC +RE A EK+   L
Sbjct: 14  KKVYIRTFGCQMNQADTEIITALLQDEGYVMTGSEERADLVILNTCAVRENAVEKILHTL 73

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             ++  + SR      LLV V GCV Q   E++   +  ++ + GP TY +LP ++  A 
Sbjct: 74  DHMKGKRRSR----PGLLVGVIGCVPQYYREKMFGMADGIDFLAGPDTYRQLPAMIANAG 129

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G R  D  +S ++ +  +     G      ++AF+ +  GC+  C FCVVP+TRG E S
Sbjct: 130 QGIRGADFGFSSDETYCGIEPARSGT-----ISAFIPVMRGCNNRCAFCVVPFTRGKERS 184

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R    V+++  +L  +G  EITLLGQNVN++     D   C F++LL  ++     VR+R
Sbjct: 185 RPFRSVLEDVGRLAASGYKEITLLGQNVNSYSD---DEAACDFTELLDRVAVAAEGVRIR 241

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +TTSHP+D+S+ L++     + +   +HLPVQSGS R+LK MNR HT  EY + I  IRS
Sbjct: 242 FTTSHPKDISESLVRVIAARNNICNAIHLPVQSGSTRMLKLMNRGHTREEYFEKIAMIRS 301

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ--- 381
             P + +S+D I GF GET +D +AT+ +++ + +  A+ F YS R GT  +  L     
Sbjct: 302 AIPGVTVSTDLIAGFCGETLEDHQATLSMMEDVRFDFAYMFYYSVRPGTYAAKHLPDDVP 361

Query: 382 -VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVV 439
             ++  + E ++ LQ  +  ++   N A VG ++EVL E   K   + L+GR+   + VV
Sbjct: 362 EEEKKRRLEEIIALQGSISGER---NAAEVGAVVEVLAESESKRSSEMLMGRTDTNRVVV 418

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYG 465
            +      GD++KVRI     +TL G
Sbjct: 419 FDRHGFEAGDLVKVRIRSSTPATLIG 444


>gi|86148942|ref|ZP_01067174.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Campylobacter jejuni
           subsp. jejuni CF93-6]
 gi|85840300|gb|EAQ57557.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Campylobacter jejuni
           subsp. jejuni CF93-6]
          Length = 433

 Score =  266 bits (681), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 161/447 (36%), Positives = 248/447 (55%), Gaps = 20/447 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRM-EDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ F+++ GC MNV DS  M  ++   + Y     + +ADLI++NTC +REK   K++S 
Sbjct: 4   KKLFIQTLGCAMNVRDSEHMIAELTQKENYVLTEDIKEADLILINTCSVREKPVHKLFSE 63

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G    +K    KEG    + V GC A   G EI +R+P V+ V+G +   ++ + ++  
Sbjct: 64  VGGFEKVK----KEGAK--IGVCGCTASHLGNEIFKRAPYVDFVLGARNISKITQAIKTP 117

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           +F    VD DY  E +F      +  Y       +++ I  GCDK CT+C+VP+TRG EI
Sbjct: 118 KFMG--VDIDYD-ESEFAFADFRNSIYK------SYINISIGCDKHCTYCIVPHTRGDEI 168

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE--KCTFSDLLYSLSEIKGLV 261
           S   + +  EA+K I+ G  EI LLGQNVN + GK    E  K  FSDLL  LS I+GL 
Sbjct: 169 SIPFNIIYKEAQKAIEKGAKEIFLLGQNVNNY-GKRFRNEHKKMDFSDLLEELSTIEGLE 227

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+T+ HP  M D  ++   +   +   +H+P+QSGS  ILK+M R +T   Y     +
Sbjct: 228 RIRFTSPHPLHMDDKFLEVFANNPKVCKSMHMPLQSGSSEILKAMKRGYTKEWYLNRALK 287

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R + P+++IS+D IV FPGE++ DF  T+D+++K+ + Q FSFKYS R  T  + M  Q
Sbjct: 288 LRELCPNVSISTDIIVAFPGESEKDFEETVDVLEKVRFEQIFSFKYSKRPLTKAATMPNQ 347

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           +DE + + RL  LQ +  E           +  +VL E+  +    + GR+     V + 
Sbjct: 348 IDEEIASRRLSTLQNRHSEILDKIVKKQENKTFKVLFEEL-RAGNSIAGRTDNNFLVQVE 406

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                +G   +V+IT+ K   LYGE+V
Sbjct: 407 GSEELLGQFKEVKITNAKRMVLYGEIV 433


>gi|152993775|ref|YP_001359496.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Sulfurovum sp.
           NBC37-1]
 gi|151425636|dbj|BAF73139.1| tRNA-i(6)A37 thiotransferase enzyme [Sulfurovum sp. NBC37-1]
          Length = 419

 Score =  266 bits (681), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 163/435 (37%), Positives = 239/435 (54%), Gaps = 18/435 (4%)

Query: 36  MNVYDSLRM-EDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSR 94
           MNV DS  M  ++   + YE   ++++ADLI++NTC +REK   K++S +G     K   
Sbjct: 1   MNVRDSEHMIAELNQKEPYELTQNVEEADLIIINTCSVREKPVAKLFSEIGVFNKYKKPG 60

Query: 95  IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDY 154
            K G      VAGC A   G++I++R+P V+ V+G +   ++ E++++    +  +DTDY
Sbjct: 61  AKIG------VAGCTASHLGKDIIKRAPSVDFVIGARNVSKITEVVDKKHAVE--IDTDY 112

Query: 155 SVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEA 214
                    S    G  R     A + I  GCDK CTFC+VP TRG EIS     +V E 
Sbjct: 113 DE-------STYAFGEYRTNPFKAMVNISIGCDKSCTFCIVPATRGDEISIPSDLLVQEI 165

Query: 215 RKLIDNGVCEITLLGQNVNAW-RGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
            K +  G  E+ LLGQNVN + R  G   EK  F+ LL  +S+I+GL R+R+T+ HP  M
Sbjct: 166 TKAVATGAKEVMLLGQNVNNYGRRFGATEEKIDFTGLLQKISKIEGLERIRFTSPHPLHM 225

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
            D  I+       +   +H+P+QSGS  +LK M R +T   +    ++IR + P+  IS+
Sbjct: 226 DDAFIQEFASNPKICKQIHVPLQSGSTSLLKVMKRGYTKENFLGRCEKIRMLCPEATIST 285

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLC 393
           D IVGFPGET+ DF  TMD+++K+ + Q FSFKYSPR  T  +   EQ+D  +  ERL  
Sbjct: 286 DIIVGFPGETEADFEDTMDVLEKVRFEQLFSFKYSPRPHTEAAEFEEQIDNKIAGERLTR 345

Query: 394 LQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKV 453
           LQ +  E      DA +G++ EV  ++  K  G++ GRS   + V +      +G I+ V
Sbjct: 346 LQTRHTEILDEIMDAQLGKVHEVYFDEL-KSNGRVSGRSDDGKLVFVEGSEELLGKIVDV 404

Query: 454 RITDVKISTLYGELV 468
           RI       L G LV
Sbjct: 405 RIIKTSRGALDGVLV 419


>gi|326567673|gb|EGE17779.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Moraxella
           catarrhalis BC1]
          Length = 349

 Score =  266 bits (681), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 143/351 (40%), Positives = 211/351 (60%), Gaps = 23/351 (6%)

Query: 134 YRLPELLE--------------RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAF 179
           +RLPEL E              + R G  VVD  +   +KF+ L        R  G TAF
Sbjct: 2   HRLPELYESTTNQAKTDMGQIPKNRIG--VVDVSFPSIEKFDFLP-----EPRVEGYTAF 54

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
           ++I EGC K+C+FCVVPYTRG E+SR L  V+ E   L + GV E+ LLGQNVN +RG+ 
Sbjct: 55  VSIMEGCSKYCSFCVVPYTRGEELSRPLDDVLAEIDSLAEQGVREVNLLGQNVNGYRGEK 114

Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
            DG  C FS+LL+ +S I G+ R+RYTTSHP + +D +I+A+  +D L+ +LHLP+QSGS
Sbjct: 115 DDGSICRFSELLHYVSYIDGIERIRYTTSHPLEFTDDIIEAYQSIDKLVSHLHLPIQSGS 174

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
           +++L +M R HT   Y   I ++R +RPD+ +SSDFI+GFPGETD+DF  T+     + +
Sbjct: 175 NQVLAAMKRNHTVDVYMNQIAKLRKIRPDLHLSSDFIIGFPGETDEDFLQTLQFAKDLDF 234

Query: 360 AQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419
             ++SF YS R GTP S++ + V    K +RL   Q+ ++       +A VGQ + VL E
Sbjct: 235 DHSYSFIYSKRPGTPASDLPDDVSLETKKQRLAVFQELIKRSTFEKTEAMVGQTLRVLAE 294

Query: 420 KHG-KEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITD-VKISTLYGELV 468
           +   + +G L G +   +SV+  +    +G  + ++IT  + +  + GELV
Sbjct: 295 EPANRRQGYLHGTADNTRSVIFKADTDLLGKFVMIKITKAISMHLVEGELV 345


>gi|298372633|ref|ZP_06982623.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacteroidetes oral taxon
           274 str. F0058]
 gi|298275537|gb|EFI17088.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacteroidetes oral taxon
           274 str. F0058]
          Length = 440

 Score =  266 bits (681), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 155/450 (34%), Positives = 252/450 (56%), Gaps = 17/450 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + ++  +++YGCQMNV DS  +  +  S GY+  ++  +AD I++NTC +R+ A +KV S
Sbjct: 1   MAKKLKIETYGCQMNVADSEVVAAIMLSDGYQMTDNEKEADTIIINTCSVRDNAEQKVIS 60

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            L    +L+    K   DL + V GC+A+   EE+L +  I + V GP +Y  LP L+  
Sbjct: 61  RLQYFNSLR----KNNKDLNIGVIGCMAERMQEELLEKHNI-DFVAGPDSYLDLPNLVGA 115

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
              G++ ++   S  + ++ +     G    + +  F++I  GC+KFC++C+VPYTRG E
Sbjct: 116 VEKGEKAINIKLSKTETYKDVMPARIG----KSILGFVSIMRGCNKFCSYCIVPYTRGRE 171

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR +  +++E + L  NG  E+TLLGQNV+++      G    FS LL  ++     +R
Sbjct: 172 RSREVESIINEVKNLQANGYKEVTLLGQNVDSYLYNDGKGNATDFSQLLEKVALAVPDMR 231

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTS+P DM+D  ++       +  Y+HLPVQSGS++ LK M R++T  EY   I  I
Sbjct: 232 IRFTTSYPNDMTDQTLEVIAQYPNICRYIHLPVQSGSNKTLKLMKRKYTREEYLDRIAAI 291

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML-EQ 381
           R + P+ +I +D   GF  E++ DF  T+ L+ ++ +  AF FKYS R GT  +  L + 
Sbjct: 292 RRILPEASIGTDIFCGFSDESEQDFEDTLSLMREVRFDMAFMFKYSERPGTFAAKHLPDN 351

Query: 382 VDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQS 437
           + E VK  RL   + LQ +L    ++ N   +G+  EVL+E + K  +    GR+   + 
Sbjct: 352 IPEEVKIHRLNQIIALQNQL---SLTSNLNDIGKTFEVLVEGYSKRSRDDFYGRTSQNKV 408

Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
           V+       IGD+I V I     ++L GE+
Sbjct: 409 VIFPKNGTKIGDLIDVTIHRATGASLIGEI 438


>gi|320334840|ref|YP_004171551.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Deinococcus maricopensis DSM 21211]
 gi|319756129|gb|ADV67886.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Deinococcus maricopensis DSM 21211]
          Length = 460

 Score =  266 bits (681), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 163/451 (36%), Positives = 251/451 (55%), Gaps = 37/451 (8%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           +YGCQMN YD+  ++    S G + V+S+D+AD +++NTC IR +   KV S LG +R L
Sbjct: 7   TYGCQMNEYDTHTVQSQLVSLGADMVHSVDEADFVLINTCAIRGRPVNKVRSLLGDLRKL 66

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
           K  R      ++V + GC+AQ +  + +     V+V++GP +   +  +LE         
Sbjct: 67  KTRR-----PIVVGMMGCLAQLQEGQDMAEEYGVDVLIGPGSLLEIGRVLEN-------- 113

Query: 151 DTDYSVEDKFERLSIVDGGYNR------KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
                  +KF  L+  D  ++       +  + A LTI  GCD  CT+C+VP TRG ++S
Sbjct: 114 ------NEKFWALNFRDELHDHIPPPPPQGTLQAHLTIMRGCDHHCTYCIVPQTRGPQVS 167

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAW---RGKGLDGEKCTFSDLLYSLSEIKGLV 261
           R    ++ E   L+  GV E+TLLGQNVNA+   +G  + G   TF+DLL  L    G+ 
Sbjct: 168 RHPDSILRELDTLLAAGVQEVTLLGQNVNAYGFDQGARMAGLP-TFADLL-RLVGRTGIR 225

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+++TTSHP + ++ +  A  D   +  ++HLP+QSGS+R+L+ M R +T  +Y Q I  
Sbjct: 226 RVKFTTSHPMNFTEDVAMAMADTPAICEFIHLPMQSGSNRVLRRMAREYTREQYLQHIAD 285

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           IR   P+  +S+D IVGFPGET++DF+ T+DL D++GY QAF F YS R GTP     E 
Sbjct: 286 IRKHLPNAVLSTDVIVGFPGETEEDFQQTLDLYDEVGYDQAFMFIYSARPGTPSHKHFED 345

Query: 382 VDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSV 438
           + + +K E   RL+ LQK+  +++   N A VG   EVL+      +G L G +     V
Sbjct: 346 LPKELKTERLGRLVELQKQWSQRR---NAALVGSAQEVLLRGDAVTEGFLEGHTRGNHPV 402

Query: 439 VL-NSKNHNIGDIIKVRITDVKISTLYGELV 468
           V+  +   +   +   RI       +YG+L+
Sbjct: 403 VVPKALGADAAGVYTARIEHATPHMMYGKLL 433


>gi|154249151|ref|YP_001409976.1| (dimethylallyl)adenosine tRNA methylthiotransferase
           [Fervidobacterium nodosum Rt17-B1]
 gi|229890533|sp|A7HK86|MIAB_FERNB RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|154153087|gb|ABS60319.1| RNA modification enzyme, MiaB family [Fervidobacterium nodosum
           Rt17-B1]
          Length = 430

 Score =  266 bits (680), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 166/443 (37%), Positives = 256/443 (57%), Gaps = 30/443 (6%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           +YGCQMN  DS  ++ +   +G E  +  +DAD+++LNTC +R+K+ EKVYS +G++R  
Sbjct: 7   TYGCQMNENDSEIVKQLLKDEGIELTDDENDADVVILNTCAVRKKSEEKVYSHIGKLR-- 64

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG-KRV 149
                K+G  + ++  GCVA+ E E + +R   V+ V+G +   ++P+ +  A+ G K++
Sbjct: 65  -----KKGKKIGIM--GCVAEKEKENLFKRG--VSFVIGTRALTKVPDAVLNAKNGNKQI 115

Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209
              D   E ++ ++        R     A++TI  GCD+FCT+C+VPYTRG E SR + +
Sbjct: 116 YLEDTLDEIEYHKVE------TRSSNHHAWVTIIHGCDRFCTYCIVPYTRGREKSRPIDE 169

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGL-DGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
           V+ E   L   G  E T LGQNV+A+ GK L DG   + + LL   S+I  + RL + TS
Sbjct: 170 VLKEVESLSQRGYKEFTFLGQNVDAY-GKDLRDG--TSLAKLLKLASQIDNVKRLWFLTS 226

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
           +P D S  + K   + + +   +HLPVQ GSD+ILK+MNRR+T  EY  +I+ IR + PD
Sbjct: 227 YPTDFSLEIPKVMLESEKVARSIHLPVQHGSDKILKAMNRRYTRQEYIDLINEIRKIVPD 286

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML-EQVDENVK 387
            +ISSD IVGFPGE D+DF AT++LV  + + +     YSPR GT     L + V   VK
Sbjct: 287 ASISSDIIVGFPGENDEDFEATVELVKLLKFERLNLAVYSPREGTVAWKYLKDDVPYQVK 346

Query: 388 AER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
             R   LL LQK + ++    N + +G+ +EV++E   K  G   GR    + +   +  
Sbjct: 347 VRRMSYLLNLQKTINKE---LNKSYLGKEVEVIVEAQAK-NGLFYGRDIRNKIISFEANP 402

Query: 445 HNIGDIIKVRITDVKISTLYGEL 467
            +IG  + V++  +    LYGE+
Sbjct: 403 ESIGKNVIVKVNKISAGPLYGEI 425


>gi|220904542|ref|YP_002479854.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
 gi|219868841|gb|ACL49176.1| RNA modification enzyme, MiaB family [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
          Length = 454

 Score =  266 bits (680), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 159/467 (34%), Positives = 257/467 (55%), Gaps = 47/467 (10%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           ++ + + + ++GCQMNV+DS  +     ++G+    S++DA ++V+NTC +REK  +KV 
Sbjct: 1   MIEKSYHIITFGCQMNVHDSQWLGRALTARGFVEA-SLEDAQVVVVNTCSVREKPEQKVM 59

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S LGRIR++         D+LV VAGCVAQ  GE    +   V +V G       P  +E
Sbjct: 60  SALGRIRHVTGG----NPDVLVGVAGCVAQQLGEGFFSKESQVRLVAGSDGISGAPAAIE 115

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVD--GGYNRKRGV----------TAFLTIQEGCDKF 189
           R             +E+    LS++D    Y  +              AF+ I +GCD F
Sbjct: 116 RL------------LEEPTLHLSLLDFTSHYIEREAGPGTSGSSSGPVAFVNIMQGCDNF 163

Query: 190 CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSD 249
           C +C+VP+TRG + SRS + ++DE R +++ G  EITLLGQNVNA+ G+   G+  +F+ 
Sbjct: 164 CAYCIVPFTRGRQKSRSAAAILDECRAVLERGAREITLLGQNVNAF-GQDKSGDGTSFAQ 222

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
           LL  ++ + GL RLRY T HP+DM    + A  +L  L P LHLP+Q+GSD +L+SM RR
Sbjct: 223 LLRQVAGLPGLERLRYVTPHPKDMGPEDVAAFAELPQLCPRLHLPLQAGSDVVLRSMRRR 282

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369
           + +  + +++D +R+ RPD+A+S+D IV FPGET++DF+ T+ ++    +  +FSF YS 
Sbjct: 283 YDSAAFLRLVDDLRAARPDLALSTDLIVAFPGETEEDFQDTLAMMRACNFMSSFSFIYSD 342

Query: 370 RLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIE------VLIEKHGK 423
           R G   +    ++  +V  +RL    ++L+  Q       +   +E      +L+E    
Sbjct: 343 RPGARAALFPGKIAPDVAQDRL----RRLQALQDDLGARWLAARVENRDKTTLLMEGPSP 398

Query: 424 EKGKLV-----GRSPW--LQSVVLNSKNHNIGDIIKVRITDVKISTL 463
           + G+       GR P+     V L +   + G +++  IT+ K  +L
Sbjct: 399 KPGESAEPSWQGRDPYGVPVHVPLPAGADHTGFLVQTVITEAKKHSL 445


>gi|153816459|ref|ZP_01969127.1| hypothetical protein RUMTOR_02712 [Ruminococcus torques ATCC 27756]
 gi|331087554|ref|ZP_08336485.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Lachnospiraceae bacterium 3_1_46FAA]
 gi|145846201|gb|EDK23119.1| hypothetical protein RUMTOR_02712 [Ruminococcus torques ATCC 27756]
 gi|330400694|gb|EGG80298.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Lachnospiraceae bacterium 3_1_46FAA]
          Length = 483

 Score =  266 bits (680), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 154/409 (37%), Positives = 239/409 (58%), Gaps = 20/409 (4%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           F V ++GCQMN  DS ++  +    GY      + AD ++ NTC +RE A ++VY  LG+
Sbjct: 47  FCVTTFGCQMNARDSEKLVGILEQIGYVEEPDEEKADFVIYNTCTVRENANQRVYGRLGQ 106

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQ-AEGEEILRRS-PIVNVVVGPQTYYRLPELL-ERA 143
           +  +K    K    +++ + GC+ Q  E  E L++S   V+++ G    Y+  EL+  R 
Sbjct: 107 LGRIK----KTNPHMMIALCGCMMQEPEVVEKLKKSYRFVDIIFGTHNIYKFAELIVSRM 162

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             GK V+D  +   DK     + D    RK    + + I  GC+ FC++C+VPY RG E 
Sbjct: 163 NSGKMVIDI-WKDTDKI----VEDLPSERKYPFKSGVNIMFGCNNFCSYCIVPYVRGRER 217

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR    ++ E  +L ++GV E+ LLGQNVN++ GK L+    TF+ LL  + +I  + R+
Sbjct: 218 SRDPKAIIREIERLAEDGVVEVMLLGQNVNSY-GKTLE-HPMTFAQLLREIEKIDKIERI 275

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+ TSHP+D+SD LI+       +  +LHLPVQSGS RIL+ MNRR+T   Y ++++++R
Sbjct: 276 RFMTSHPKDLSDELIEVMAQSKKICRHLHLPVQSGSTRILEKMNRRYTKEHYLKLVEKLR 335

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              PDI++++D IVGFPGET++DFR T+D+V K+ Y  AF+F YS R GTP + M +Q+ 
Sbjct: 336 KAIPDISLTTDIIVGFPGETEEDFRETLDVVCKVQYDSAFTFIYSKRTGTPAAAMEDQIS 395

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACV---GQIIEVLIEKHGKEKGKLV 429
           ++V  +R   L   L E Q   +  C    G +  VL+E   +   +L+
Sbjct: 396 DDVVKDRFGRL---LEEVQTISSKMCSRHEGTVQRVLVESCNEHDERLM 441


>gi|269792733|ref|YP_003317637.1| RNA modification enzyme, MiaB family [Thermanaerovibrio
           acidaminovorans DSM 6589]
 gi|269100368|gb|ACZ19355.1| RNA modification enzyme, MiaB family [Thermanaerovibrio
           acidaminovorans DSM 6589]
          Length = 433

 Score =  266 bits (680), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 170/446 (38%), Positives = 246/446 (55%), Gaps = 20/446 (4%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           F +  +GCQMNVYD+ ++       G+ +      +D+ V  TC IR+KA +KV S +GR
Sbjct: 4   FNINVFGCQMNVYDADKLRAALLGMGWTQ-GEPGGSDVEVYVTCSIRDKAEQKVLSEIGR 62

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
                +SR KE    LV + GC+AQ  G E+ RR P V VV GP+   ++PE LER+   
Sbjct: 63  -----HSRSKE--RPLVALVGCMAQRTGRELARRFPWVKVVAGPRHLGKVPEALERSMAD 115

Query: 147 KRV---VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             V   +D D    D       V+ G      V  ++TI  GCD FC +C+VPY RG   
Sbjct: 116 GEVRLLLDEDPREVDDLCCTPHVEEG-----AVRGYVTIAHGCDHFCAYCIVPYVRGRFR 170

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR    +V+E R+L+  GV EITLLGQNVN + GK L G    F  LL  ++ ++G+ R+
Sbjct: 171 SRDPEGIVEEVRQLVARGVREITLLGQNVNRY-GKDLPGGP-QFPGLLEMVARVEGISRV 228

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+ T+HP D S  L+      + + P ++LPVQSGSDR+LK M R +T  EY  ++  +R
Sbjct: 229 RFATNHPVDFSRELVDVMVRCEKVCPSINLPVQSGSDRVLKLMGRGYTRDEYLSMVALLR 288

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              P++ I+SD IVGFPGET +DF  ++ L++++ +    +  YS R GT    M   +D
Sbjct: 289 DNLPEVGITSDLIVGFPGETPEDFEKSLSLLEEVRFDLVHTAAYSVRPGTRAERMEGHLD 348

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLNS 442
            + KAERL  + +      +  N + VG++  VL+E    K +G   GR+P    VVL  
Sbjct: 349 VSTKAERLNRVNQLQARISLEINLSKVGRVYPVLVEGPAPKGEGMWQGRTPQ-DKVVLFK 407

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
               +G+ + VRIT      L GEL+
Sbjct: 408 GPSKVGEEVPVRITSALAWYLQGELI 433


>gi|86151526|ref|ZP_01069740.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Campylobacter jejuni
           subsp. jejuni 260.94]
 gi|315124005|ref|YP_004066009.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Campylobacter jejuni
           subsp. jejuni ICDCCJ07001]
 gi|85841155|gb|EAQ58403.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Campylobacter jejuni
           subsp. jejuni 260.94]
 gi|315017727|gb|ADT65820.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Campylobacter jejuni
           subsp. jejuni ICDCCJ07001]
          Length = 433

 Score =  266 bits (680), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 160/447 (35%), Positives = 247/447 (55%), Gaps = 20/447 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRM-EDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ F+++ GC MNV DS  M  ++   + Y     + +ADLI++NTC +REK   K++S 
Sbjct: 4   KKLFIQTLGCAMNVRDSEHMIAELTQKENYALTEDIKEADLILINTCSVREKPVHKLFSE 63

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G    +K    KEG    + V GC A   G EI +R+P V+ V+G +   ++ + ++  
Sbjct: 64  VGGFEKVK----KEGAK--IGVCGCTASHLGNEIFKRAPYVDFVLGARNISKITQAIKTP 117

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           +F    VD +Y  E +F      +  Y       +++ I  GCDK CT+C+VP+TRG EI
Sbjct: 118 KFMG--VDINYD-ESEFAFADFRNSIYK------SYINISIGCDKHCTYCIVPHTRGDEI 168

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE--KCTFSDLLYSLSEIKGLV 261
           S   + +  EA+K ++ G  EI LLGQNVN + GK    E  K  FSDLL  LS I+GL 
Sbjct: 169 SIPFNIIYKEAQKAVEKGAKEIFLLGQNVNNY-GKRFRNEHKKMDFSDLLEELSTIEGLE 227

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+T+ HP  M D  ++   +   +   +H+P+QSGS  ILK+M R +T   Y     +
Sbjct: 228 RIRFTSPHPLHMDDKFLEVFANNPKVCKSMHMPLQSGSSEILKAMKRGYTKEWYLNRALK 287

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R + P+++IS+D IV FPGE++ DF  TMD+++K+ + Q FSFKYS R  T  + M  Q
Sbjct: 288 LRELCPNVSISTDIIVAFPGESEKDFEETMDVLEKVRFEQIFSFKYSKRPLTKAATMPNQ 347

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           +DE   + RL  LQ +  E           +  +VL E+  +    + GR+     V + 
Sbjct: 348 IDEETASRRLSTLQNRHSEILDEIVKKQENKTFKVLFEEL-RAGNSITGRTDNNFLVQVE 406

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                +G   +V+IT+ K   LYGE+V
Sbjct: 407 GSEELLGQFKEVKITNAKRMVLYGEIV 433


>gi|226324928|ref|ZP_03800446.1| hypothetical protein COPCOM_02720 [Coprococcus comes ATCC 27758]
 gi|225207376|gb|EEG89730.1| hypothetical protein COPCOM_02720 [Coprococcus comes ATCC 27758]
          Length = 503

 Score =  266 bits (679), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 161/445 (36%), Positives = 245/445 (55%), Gaps = 22/445 (4%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           ++GCQMN  DS ++  +    GY+     + AD ++ NTC +RE A  +VY   GR+  L
Sbjct: 71  TFGCQMNARDSEKLVGVLELIGYKEEPDEEKADFVIYNTCTVRENANLRVY---GRLGQL 127

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
              + K+   + + + GC+ Q     E+I +    V+++ G    Y+  EL+      +R
Sbjct: 128 GAKKKKKNPHMFIGLCGCMMQEPTVVEKIKKSYRFVDLIFGTHNIYKFAELIVTRFESER 187

Query: 149 VV-----DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           +V     DTD  VED             RK    + + I  GC+ FC++C+VPY RG E 
Sbjct: 188 MVIDIWKDTDKIVEDL---------PSERKFSFKSGVNIMFGCNNFCSYCIVPYVRGRER 238

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR+   ++ E   L+ +GV E+ LLGQNVN++ GK L+ E  TF+ LL  + +I+GL R+
Sbjct: 239 SRNPKDIIREIEGLVADGVVEVMLLGQNVNSY-GKNLE-EPMTFAQLLQEIEKIEGLERI 296

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+ TSHP+D+SD LI        +  +LHLPVQSGS RIL+ MNR +T   Y +++ +IR
Sbjct: 297 RFMTSHPKDLSDELIDVMAHSKKICKHLHLPVQSGSSRILQKMNRHYTKEHYLEVVRKIR 356

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              PDI++++D IVGFPGET++DF+ T+D+V ++ Y  AF+F YS R GTP + M +QV 
Sbjct: 357 EAVPDISLTTDIIVGFPGETEEDFQDTLDIVRQVRYDSAFTFIYSKRTGTPAAAMEDQVP 416

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GRSPWLQSVVLNS 442
           ++V  +R   L K++++          G   +VL+E        LV GR      V    
Sbjct: 417 DDVVKDRFDRLLKEVQQISAEVCSVHQGTTQDVLVESVNDHDPSLVTGRMSNNLLVHFPG 476

Query: 443 KNHNIGDIIKVRITDVKISTLYGEL 467
               IG I+ V + + K     GEL
Sbjct: 477 DESMIGKIVTVYLKEAKGFYYMGEL 501


>gi|148925837|ref|ZP_01809524.1| hypothetical protein Cj8486_0449c [Campylobacter jejuni subsp.
           jejuni CG8486]
 gi|145844823|gb|EDK21927.1| hypothetical protein Cj8486_0449c [Campylobacter jejuni subsp.
           jejuni CG8486]
          Length = 433

 Score =  266 bits (679), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 160/447 (35%), Positives = 246/447 (55%), Gaps = 20/447 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRM-EDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ F+++ GC MNV DS  M  ++   + Y     + +ADLI++NTC +REK   K++S 
Sbjct: 4   KKLFIQTLGCAMNVRDSEHMIAELTQKENYALTEDIKEADLILINTCSVREKPVHKLFSE 63

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G    +K    KEG    + V GC A   G EI +R+P V+ V+G +   ++ + ++  
Sbjct: 64  VGSFEKVK----KEGAK--IGVCGCTASHLGNEIFKRAPYVDFVLGARNISKITQAIKTP 117

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           +F    VD DY  E +F      +  Y       +++ I  GCDK CT+C+VP+TRG EI
Sbjct: 118 KFMG--VDIDYD-ESEFAFADFRNSIYK------SYINISIGCDKHCTYCIVPHTRGDEI 168

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE--KCTFSDLLYSLSEIKGLV 261
           S   + +  EA+K ++ G  EI LLGQNVN + GK    E  K  FSDLL  LS I+ L 
Sbjct: 169 SIPFNIIYKEAQKAVEKGAKEIFLLGQNVNNY-GKRFRNEHKKMDFSDLLEELSTIEDLE 227

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+T+ HP  M D  ++   +   +   +H+P+QSGS  ILK+M R +T   Y     +
Sbjct: 228 RIRFTSPHPLHMDDKFLEVFANNPKVCKSMHMPLQSGSSEILKAMKRGYTKEWYLNRALK 287

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R + P+++IS+D IV FPGE++ DF  TMD+++K+ + Q FSFKYS R  T  + M  Q
Sbjct: 288 LRELCPNVSISTDIIVAFPGESEKDFEETMDVLEKVRFEQIFSFKYSKRPLTKAATMPNQ 347

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           +DE   + RL  LQ +  E           +  +VL E+  +    + GR+     V + 
Sbjct: 348 IDEETASRRLSTLQNRHSEILDEIVKKQENKTFKVLFEEL-RAGNSIAGRTDNNFLVQVE 406

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                +G   +V+IT+ K   LYGE+V
Sbjct: 407 GSEELLGQFKEVKITNAKRMVLYGEIV 433


>gi|217076413|ref|YP_002334129.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Thermosipho africanus
           TCF52B]
 gi|229891011|sp|B7IFC4|MIAB_THEAB RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|217036266|gb|ACJ74788.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Thermosipho africanus
           TCF52B]
          Length = 429

 Score =  266 bits (679), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 162/444 (36%), Positives = 251/444 (56%), Gaps = 20/444 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +FF+K+YGCQMN  DS         +GYE   + ++AD+++LNTC +R+KA +K  S +G
Sbjct: 2   KFFIKTYGCQMNENDSEVARYYLEQEGYESAENENEADIVILNTCVVRKKAEDKFLSTIG 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +R  KN +I         V GC A+   E++ +R   VN V+G +   R+PE +E +  
Sbjct: 62  ELRK-KNKKIG--------VMGCGAEKLKEDLFKRG--VNFVIGTRAISRIPEAVELSIK 110

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           GK+    D  + D+ +  +I+     R     A++TI  GC++FCT+C+VPYTRG E SR
Sbjct: 111 GKKAAIFDDKL-DEIDYRNIL----KRNSKHHAWITIIYGCNRFCTYCIVPYTRGREKSR 165

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            +  ++ E + L  NGV EIT LGQNV+A+ GK L+ +  + + LL    +I+ + R+ +
Sbjct: 166 KMDDILREVKNLSLNGVREITYLGQNVDAY-GKDLN-DGTSLAKLLNETKKIENIERIWF 223

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
            TS+P D S  + +     + +   +HLPVQ GS++ILK MNRR+T  EY ++I  IR +
Sbjct: 224 LTSYPTDFSLDIAREIASSEKIAKSIHLPVQHGSNKILKKMNRRYTIEEYYELIKSIREI 283

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE-QVDE 384
            PD +ISSD IVGFP ET+DDF+ T+ LV++I + +     YSPR GT      E  V  
Sbjct: 284 VPDASISSDIIVGFPDETEDDFQQTVKLVEEIKFERLNLAIYSPREGTIAWKYFEDNVPR 343

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
            +K  R+  L    +E     N++ + + +EV++E+  K  G   GR    + +      
Sbjct: 344 AIKTRRMAYLLNLQKEINKMLNESYLDKTVEVIVEERAKS-GLFYGRDIRNKIIAFEGDE 402

Query: 445 HNIGDIIKVRITDVKISTLYGELV 468
             IG  I V+I       LYG+++
Sbjct: 403 SLIGKKILVKIKKTTAGPLYGDII 426


>gi|194044464|ref|XP_001928891.1| PREDICTED: CDK5 regulatory subunit-associated protein 1 [Sus
           scrofa]
          Length = 589

 Score =  266 bits (679), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 163/487 (33%), Positives = 265/487 (54%), Gaps = 39/487 (8%)

Query: 18  VDQCIVPQR-FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA 76
           VD+ +  QR  ++++YGCQMNV D+     +    GY R +++ +AD+I+L TC IREKA
Sbjct: 94  VDELLGKQRKVYLETYGCQMNVNDTEIAWSILQKNGYLRTSNLQEADVILLVTCSIREKA 153

Query: 77  AEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL 136
            + +++ L +++ LK+ R++    L + + GC+A+   EEIL R  +V+++ GP  Y  L
Sbjct: 154 EQTIWNRLHQLKALKSKRLRSQVPLRIGILGCMAERLKEEILNREKMVDILAGPDAYRDL 213

Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
           P LL  A  G++  +   S+++ +  +  V    +     +AF++I  GCD  C++C+VP
Sbjct: 214 PRLLAVAESGQQAANVLLSLDETYADVLPVQTSPS---ATSAFVSIMRGCDNMCSYCIVP 270

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR---------------GKGLD 241
           +TRG E SR ++ +++E RKL + G+ E+TLLGQNVN++R                +G  
Sbjct: 271 FTRGRERSRPVASILEEVRKLSEQGLKEVTLLGQNVNSFRDTSEVQFNNAVSTNLSRGFS 330

Query: 242 GEKCT------FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPV 295
               T      F+ LL  +S+I   +R+R+T+ HP+D  D +++   D D +   +HLP 
Sbjct: 331 SNYKTKQGGLRFAHLLDQVSQIDPEMRIRFTSPHPKDFPDEVLQLIHDRDNICKQIHLPA 390

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
           QSGS R+L++M R ++   Y +++  IR   P +++SSDFI GF GET++D   T+ L+ 
Sbjct: 391 QSGSSRVLEAMRRGYSREAYVELVHHIRESIPGVSLSSDFIAGFCGETEEDHLQTVSLLQ 450

Query: 356 KIGYAQAFSFKYSPRLGTPGSNML-EQVDENVKAERLLCLQKKLREQQVSFNDACVGQII 414
           ++ Y   F F YS R  T   + L + + E VK  RL  L    RE+    N   VG I 
Sbjct: 451 EVQYNMGFLFAYSMRQKTRAYHRLKDDIPEEVKLRRLEELITVFREEATKANKTFVGCIQ 510

Query: 415 EVLIEKHGKEKGK-LVGRSPWLQSVVL------NSKNHNI------GDIIKVRITDVKIS 461
            VL+E   K     L GR+     V+       +  N  +      GD + V+IT     
Sbjct: 511 LVLVEGFSKRSSTDLCGRNDGNLKVIFPDVELEDVTNSGLKVRAQPGDYVLVKITSASSQ 570

Query: 462 TLYGELV 468
           TL G ++
Sbjct: 571 TLKGHVL 577


>gi|118474317|ref|YP_892518.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Campylobacter fetus
           subsp. fetus 82-40]
 gi|229890467|sp|A0RQN5|MIAB_CAMFF RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|118413543|gb|ABK81963.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Campylobacter fetus
           subsp. fetus 82-40]
          Length = 434

 Score =  266 bits (679), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 165/449 (36%), Positives = 243/449 (54%), Gaps = 20/449 (4%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRM-EDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           V ++ F+++ GC MNV DS  +  ++   + YE  N ++DADLI++NTC +REK   K++
Sbjct: 3   VKKKLFIETLGCAMNVRDSEHIIAELSQKENYEVTNIIEDADLILINTCSVREKPVHKLF 62

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S +G     K           + V GC A   G E+ +R+P V+ V+G +   ++   L 
Sbjct: 63  SEVGTYEKAKKKG------AKIGVCGCTASHLGSEVFKRAPYVDFVLGARNISKITTALN 116

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
             +F    ++ D S E  F        G  R     +F+ I  GCDK CT+C+VP TRG 
Sbjct: 117 TPKFVSVDINHDES-EYAF--------GDFRSSPYKSFVNIMIGCDKKCTYCIVPQTRGD 167

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG--EKCTFSDLLYSLSEIKG 259
           EIS     ++ E RK   +G  EI LLGQNVN + GK   G  EK  FSDLL  +SE+ G
Sbjct: 168 EISIPKDIILKEVRKAASSGAKEIFLLGQNVNNY-GKRFSGTHEKIDFSDLLNLISEVDG 226

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           + R+R+T+ HP  M D  +K       +   +H+P+QSGS+ ILK+M R +T   +    
Sbjct: 227 VERIRFTSPHPLHMDDKFLKEFSTNPKICKSMHMPLQSGSNEILKAMKRGYTKEWFLDRA 286

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            ++R +  D+ IS+D IV FPGE+D DF  TM +V+ I + Q FSFKYS R  TP ++M 
Sbjct: 287 LKLREICSDVTISTDIIVAFPGESDRDFADTMSVVESIKFEQMFSFKYSSRPLTPAASMT 346

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV 439
            QV+ ++ + RL  LQ +  E       A    I EV  E+  +    + GR+     V 
Sbjct: 347 NQVNSDIASRRLSTLQARHTEILDEIVKAQKNSIHEVYFEEL-RANSSVAGRTFNNFLVQ 405

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
            N     +G I+KV+ITD K   LYG+++
Sbjct: 406 TNGSEELLGKILKVKITDPKRMVLYGQII 434


>gi|301765780|ref|XP_002918310.1| PREDICTED: CDK5 regulatory subunit-associated protein 1-like
           [Ailuropoda melanoleuca]
          Length = 583

 Score =  265 bits (678), Expect = 9e-69,   Method: Compositional matrix adjust.
 Identities = 166/487 (34%), Positives = 261/487 (53%), Gaps = 39/487 (8%)

Query: 18  VDQCIVPQR-FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA 76
           VD+ +  QR  ++++YGCQMNV D+     +    GY R  ++ +AD+I+L TC IREKA
Sbjct: 88  VDELLGRQRKVYLETYGCQMNVNDTEIAWSILQKSGYLRTRNLQEADVILLVTCSIREKA 147

Query: 77  AEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL 136
            + +++ L +++ LK  R++    L + + GC+A+   EEIL R  +V+++ GP  Y  L
Sbjct: 148 EQTIWNRLHQLKALKTKRLRSRVPLRIGILGCMAERLKEEILNREKMVDILAGPDAYRDL 207

Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
           P LL  A  G++  +   S+++ +  +  V    +     +AF++I  GCD  C++C+VP
Sbjct: 208 PRLLAVAESGQQAANVLLSLDETYADVMPVQTSPS---ATSAFVSIMRGCDNMCSYCIVP 264

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR---------------GKGLD 241
           +TRG E SR +  +++E RKL + G+ E+TLLGQNVN++R                +G  
Sbjct: 265 FTRGRERSRPVDSILEEVRKLSEQGLKEVTLLGQNVNSFRDSSEVQFNNAVSTNLSRGFS 324

Query: 242 GE------KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPV 295
                      F+ LL  +S I   +R+R+T+ HP+D  D +++   + D +   +HLP 
Sbjct: 325 TNYKPKQGGLRFAHLLDKVSRIDPEMRIRFTSPHPKDFPDEVLQLIQERDNICKQIHLPA 384

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
           QSGS R+L++M R ++   Y ++I  IR   P +++SSDFI GF GET++D   T+ L+ 
Sbjct: 385 QSGSSRVLEAMRRGYSREAYVELIHHIRESIPGVSLSSDFIAGFCGETEEDHLQTVSLLR 444

Query: 356 KIGYAQAFSFKYSPRLGTPGSNML-EQVDENVKAERLLCLQKKLREQQVSFNDACVGQII 414
           ++ Y   F F YS R  T   + L + V E VK  RL  L    RE+    N A VG   
Sbjct: 445 EVQYNMGFLFAYSMRQKTRAYHRLKDDVPEEVKLRRLEELITVFREEATKANMASVGCTQ 504

Query: 415 EVLIEKHGKEKGK-LVGRSPWLQSVVL---------NSK---NHNIGDIIKVRITDVKIS 461
            VL+E H K     L GR+     V+          NSK       GD + V+IT     
Sbjct: 505 LVLVEGHSKRSATDLCGRNDGNLKVIFPDVEMEDVNNSKVKVRAQPGDYVLVKITSTSSQ 564

Query: 462 TLYGELV 468
           TL G ++
Sbjct: 565 TLKGHVL 571


>gi|289805405|ref|ZP_06536034.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella
           enterica subsp. enterica serovar Typhi str. AG3]
          Length = 261

 Score =  265 bits (677), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 127/261 (48%), Positives = 178/261 (68%), Gaps = 5/261 (1%)

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
             R VD  +   +KF+RL        R  G TAF++I EGC+K+CT+CVVPYTRG E+SR
Sbjct: 4   AARSVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTYCVVPYTRGEEVSR 58

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
               ++ E  +L   GV E+ LLGQNVNAWRG+  DG   TF+DLL  ++ I G+ R+R+
Sbjct: 59  PSDDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTTGTFADLLRLVAAIDGIDRIRF 118

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
           TTSHP + +D +I+ + D   L+ +LHLPVQSGSDR+L  M R HTA EY+ II ++R+ 
Sbjct: 119 TTSHPIEFTDDIIEVYRDTPELVSFLHLPVQSGSDRVLNLMGRTHTALEYKAIIRKLRAA 178

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
           RPDI ISSDFIVGFPGET DDF  TM L+  + +  ++SF +S R GTP ++M++ V E 
Sbjct: 179 RPDIQISSDFIVGFPGETTDDFEKTMKLIADVNFDMSYSFIFSARPGTPAADMVDDVPEE 238

Query: 386 VKAERLLCLQKKLREQQVSFN 406
            K +RL  LQ+++ +Q ++++
Sbjct: 239 EKKQRLYILQERINQQAMAWS 259


>gi|57237512|ref|YP_178526.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Campylobacter jejuni
           RM1221]
 gi|81353973|sp|Q5HW09|MIAB_CAMJR RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|57166316|gb|AAW35095.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Campylobacter jejuni
           RM1221]
 gi|315057878|gb|ADT72207.1| tRNA-i(6)A37 methylthiotransferase [Campylobacter jejuni subsp.
           jejuni S3]
          Length = 433

 Score =  265 bits (677), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 160/447 (35%), Positives = 246/447 (55%), Gaps = 20/447 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRM-EDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ F+++ GC MNV DS  M  ++   + Y     + +ADLI++NTC +REK   K++S 
Sbjct: 4   KKLFIQTLGCAMNVRDSEHMIAELTQKENYALTEDIKEADLILINTCSVREKPVHKLFSE 63

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G    +K    KEG    + V GC A   G EI +R+P V+ V+G +   ++ + ++  
Sbjct: 64  VGGFEKVK----KEGAK--IGVCGCTASHLGNEIFKRAPYVDFVLGARNISKITQAIKTP 117

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           +F    VD DY  E +F      +  Y       +++ I  GCDK CT+C+VP+TRG EI
Sbjct: 118 KFMG--VDIDYD-ESEFAFADFRNSIYK------SYINISIGCDKHCTYCIVPHTRGDEI 168

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE--KCTFSDLLYSLSEIKGLV 261
           S   + +  EA+K ++ G  EI LLGQNVN + GK    E  K  FSDLL  LS I+ L 
Sbjct: 169 SIPFNIIYKEAQKAVEKGAKEIFLLGQNVNNY-GKRFRNEHKKMDFSDLLEELSTIEDLE 227

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+T+ HP  M D  ++   +   +   +H+P+QSGS  ILK+M R +T   Y     +
Sbjct: 228 RIRFTSPHPLHMDDKFLEVFANNPKVCKSMHMPLQSGSSEILKAMKRGYTKEWYLNRALK 287

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R + P+++IS+D IV FPGE++ DF  TMD+++K+ + Q FSFKYS R  T  + M  Q
Sbjct: 288 LRELCPNVSISTDIIVAFPGESEKDFEETMDVLEKVRFEQIFSFKYSKRPLTKAATMPNQ 347

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           +DE   + RL  LQ +  E           +  +VL E+  +    + GR+     V + 
Sbjct: 348 IDEETASRRLSTLQNRHSEILDEIVKKQENKTFKVLFEEL-RAGNSIAGRTDNNFLVQVE 406

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                +G   +V+IT+ K   LYGE+V
Sbjct: 407 GSEELLGQFKEVKITNAKRMVLYGEIV 433


>gi|161833793|ref|YP_001597989.1| RNA modification protein [Candidatus Sulcia muelleri GWSS]
 gi|229891010|sp|A8Z642|MIAB_SULMW RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|152206283|gb|ABS30593.1| RNA modification enzyme, MiaB family [Candidatus Sulcia muelleri
           GWSS]
          Length = 453

 Score =  265 bits (677), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 155/464 (33%), Positives = 264/464 (56%), Gaps = 27/464 (5%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           ++ ++F++++YGCQMN+ DS  +  +  ++G+ +  ++ +A++I++NTC IR+K+ +K+ 
Sbjct: 1   MIKKKFYIENYGCQMNISDSEIVSSILNNKGFIKTENLKEANIILINTCSIRDKSEKKIL 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             + +I+ +    IK+  D+L+ + GC+A       ++   ++N+VVGP +Y  +P L+ 
Sbjct: 61  LRINQIKFI----IKKNNDILIGILGCMAYKFKN--IKEKKLINLVVGPDSYREIPNLIN 114

Query: 142 RARFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
              F K+   + T +S  + +    I+     +K  +TAF+TI  GCD  CTFCVVP+TR
Sbjct: 115 NF-FKKKGEYISTSFSKTETYA--DIIPKREEKK--ITAFVTIMRGCDNMCTFCVVPFTR 169

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA--WRGKGL----------DGEKCTF 247
           G E SR    ++ E + L   G  EI LLGQNV++  W G GL          + E   F
Sbjct: 170 GREKSRDPYSIIKECKFLFKKGYKEIILLGQNVDSYLWYGGGLKKKFKIKEIKNEEIINF 229

Query: 248 SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307
           S LL  ++    L+R+R+ TS+P DMSD ++        +  ++HLPVQSGS+RIL  MN
Sbjct: 230 SKLLELVAISVPLMRIRFCTSNPNDMSDNVLNVIKKYINICKHIHLPVQSGSNRILSLMN 289

Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           R+HT  +Y  +I++I+++ P+ ++S D I GF  E ++D   T++L++ + Y  ++ F Y
Sbjct: 290 RKHTCEDYILLINKIKNIIPNCSLSCDIITGFCNENENDHNETLNLMNYVKYNFSYMFIY 349

Query: 368 SPRLGTPG-SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEK 425
           S R+GT     +++ V  + K  RL  +    +      N   +G I ++LIE    K  
Sbjct: 350 SHRIGTYAYKKLIDNVSLSTKKRRLTEIINLQKTHSYYRNRKYIGSIQDILIEGISTKNI 409

Query: 426 GKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
               GR+     V+   KN+ IGD IKV+I +   +TL G++ V
Sbjct: 410 NFFYGRNSGNDIVIFPKKNYKIGDFIKVKINNCTSATLVGDIYV 453


>gi|149179348|ref|ZP_01857907.1| probable MiaB protein-putative tRNA-thiotransferase [Planctomyces
           maris DSM 8797]
 gi|148841820|gb|EDL56224.1| probable MiaB protein-putative tRNA-thiotransferase [Planctomyces
           maris DSM 8797]
          Length = 510

 Score =  265 bits (677), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 159/472 (33%), Positives = 263/472 (55%), Gaps = 35/472 (7%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
            + ++++ GCQMN+ DS  +      +GYE   ++ +A+ I+ NTC +RE A  K+YS L
Sbjct: 32  HKLYIETVGCQMNMLDSELVVADLRKRGYELTQNVKEAETILFNTCSVREHAEHKIYSSL 91

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR+R       K+    ++ V GC+AQ + + I +++P V+ VVG     ++  L+++AR
Sbjct: 92  GRLRYGARKNPKK----VIGVMGCMAQKDQKLIFQKAPQVDFVVGTGQLAQVASLIDKAR 147

Query: 145 --FGKRVVDTDYSV------------EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190
               + V   + +V             + F+    +     R     AF+ I  GCDKFC
Sbjct: 148 VNHSQNVRSRELAVGLGRKDGKLAEITNSFQSYDPLRDPEMRPSPYQAFVRIMIGCDKFC 207

Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDL 250
           ++CVVP TRG E SRS  +++ E + L D GV E+TLLGQ VN+++    DG+    SDL
Sbjct: 208 SYCVVPSTRGPEQSRSPREILSEVKVLADQGVKEVTLLGQTVNSYK-HTQDGKLFRLSDL 266

Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
           LY + +++G+ R+++ TS+P+DM+  L++A  DL     YLH+P+Q G + +LK M R +
Sbjct: 267 LYLIHDVEGISRIKFVTSYPKDMTTDLLEAIRDLPKATRYLHVPLQHGCNDVLKVMKRGY 326

Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370
           T  +YR+++ R+  + P  ++SSDFIVG PGET++  + +++ + +  +  +F FKYS R
Sbjct: 327 TVEDYREMMQRVNEILPGCSVSSDFIVGHPGETEESHQLSLESIREFRFKNSFIFKYSER 386

Query: 371 LGTPGSNML-EQVDENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG 426
            GT  +    +++ + VK  R   +L +Q ++ E+    N   +G+ +EVL+E   K   
Sbjct: 387 PGTKAAERFKDEIPDAVKKRRNNEMLAVQNQISEED---NAEFIGKQVEVLVEGPSKSAQ 443

Query: 427 K---------LVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
           K         LVGRS   + VV +      G +  V I DV  +TL G +V 
Sbjct: 444 KAIEESLAEQLVGRSNCDRIVVFDGNPRLAGSLATVEIFDVTPTTLIGGIVT 495


>gi|300088213|ref|YP_003758735.1| MiaB family RNA modification protein [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
 gi|299527946|gb|ADJ26414.1| RNA modification enzyme, MiaB family [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
          Length = 417

 Score =  265 bits (676), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 158/444 (35%), Positives = 252/444 (56%), Gaps = 34/444 (7%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           ++ + + GCQMN  ++ R+  +   +G+  V   +DADL++L +C +R+ A E++ + L 
Sbjct: 3   KYHIFTIGCQMNQAEAERLGSLMELKGFSGVEKPEDADLVLLVSCAVRQSAEERIINRLA 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +  LK  R      L V + GC+   +   + R  P+V+   G     ++P+ L     
Sbjct: 63  VLNKLKQDR----PGLKVALTGCMVDEDPSAMRRTYPMVDYFFG---AGQMPDFL----- 110

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                       D+   + I+ G    K GVTAF+ I +GCD FC++C+VPY RG E SR
Sbjct: 111 ------------DEIPPM-ILPG----KPGVTAFVPIIQGCDNFCSYCIVPYRRGRERSR 153

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           +L ++  E  +L+  GV E+TLLGQNVNAW G  L G+    +DLL SLS  +GL+RLR+
Sbjct: 154 TLEELQAELTELVSRGVREVTLLGQNVNAW-GHDLPGQP-DLADLLTSLSRQEGLLRLRF 211

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
            T+HP+DMS+ L+++  +LD + P ++LPVQ+G DR+L+ M R +TA EY  ++ R+R  
Sbjct: 212 LTNHPKDMSERLMRSLAELDKVCPAVNLPVQAGDDRVLELMRRGYTAGEYLDLVKRLRQA 271

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML-EQVDE 384
            P +A+++D IVGFPGET+  F+ T  L++++ +       YSPR GT  +    + V  
Sbjct: 272 VPGLALTTDIIVGFPGETEAQFQNTRSLMEQVRFDAVHLAVYSPRPGTEAAEKYPDDVPR 331

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
           + K+ RL  L++         N A  G+ +EVL+E   + +G+  GR    + V   S+ 
Sbjct: 332 DQKSRRLAELERLQARIAGEINAALTGETVEVLVEN--QNRGRWRGRDIRGKLVFFESRM 389

Query: 445 HNIGDIIKVRITDVKISTLYGELV 468
              G ++ VRITD    +L GE+V
Sbjct: 390 ELSGRLVNVRITDTGPWSLRGEIV 413


>gi|42527084|ref|NP_972182.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Treponema
           denticola ATCC 35405]
 gi|81412170|sp|Q73MD3|MIAB_TREDE RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|41817508|gb|AAS12093.1| tRNA-i(6)A37 modification enzyme MiaB [Treponema denticola ATCC
           35405]
          Length = 451

 Score =  264 bits (675), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 157/458 (34%), Positives = 255/458 (55%), Gaps = 27/458 (5%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           +F ++YGCQMN  +S  ME +   +G+   +  +  DL+++NTC +R  A  +V   LG 
Sbjct: 3   YFFETYGCQMNQAESSSMEQILLEKGWTNSSDAEHCDLLIINTCSVRITAENRVLGRLGH 62

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
              LK  R        V++ GC+A+    EI +  P+++ VVG      LP++ +  +  
Sbjct: 63  FSGLKKKR-----KFFVLLIGCMAERLYTEIQKEFPLIDYVVGMFERNLLPQIFDEIK-- 115

Query: 147 KRVVDTDYSVEDKFERLS--IVDGGY-----NRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
            R+ + +Y  E   + +    V G Y     +  +   +++ I  GC+ FCT+C+VPY R
Sbjct: 116 ARLKNDNYMAEFTHDNIEEKPVSGYYFAPLSHSPKSFQSYVPIMNGCNNFCTYCIVPYVR 175

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS---E 256
           G E+SR +++++ E  +L   GV EITLLGQNVN+++G+  +G    F  LL  ++   +
Sbjct: 176 GREVSRPVNEILQEITELSSRGVREITLLGQNVNSYKGEDGEGRLIDFPKLLTLIAREAD 235

Query: 257 IKGLVR-LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
              ++R +R+ +SHP+DMSD LI        L   +HLPVQ GSD ILK MNR +T   Y
Sbjct: 236 KTDMIRWIRFMSSHPKDMSDALIDTIAAEKRLCKLVHLPVQHGSDTILKRMNRVYTIEHY 295

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
           +  I R++   PDIA+S+D ++GFPGET+DD +AT+DL+ +I +  AF + Y+PR GT  
Sbjct: 296 KNRIKRLKETIPDIALSTDILMGFPGETEDDVKATLDLMQEIEFDSAFMYHYNPREGTKA 355

Query: 376 SNMLEQVDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGR 431
            N  +++ E VK ERL   + LQ K+         A +G+ +++L+E H + E+ +L G 
Sbjct: 356 FNYPDRIPEEVKIERLGRVIDLQLKI---TAKKMKAKLGKKVDILVESHSRNERSELFGH 412

Query: 432 SPWLQSVVL--NSKNHNIGDIIKVRITDVKISTLYGEL 467
           +   +  V+  N     IG+     + ++K  T    L
Sbjct: 413 TEQGEMTVIQGNPPESLIGNFAHAELKELKGKTFRANL 450


>gi|160892633|ref|ZP_02073423.1| hypothetical protein CLOL250_00163 [Clostridium sp. L2-50]
 gi|156865674|gb|EDO59105.1| hypothetical protein CLOL250_00163 [Clostridium sp. L2-50]
          Length = 483

 Score =  264 bits (675), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 167/450 (37%), Positives = 257/450 (57%), Gaps = 28/450 (6%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           +++YGCQMNV DS ++  +    GY   +S +DADL++ NTC +RE A  KVY  LG ++
Sbjct: 52  IQTYGCQMNVRDSEKLTGILEEIGYTSSDS-EDADLVIYNTCTVRENANRKVYGHLGIMK 110

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELL-ERARF 145
           + K +      D ++ + GC+ Q       I ++   V++V G    ++L E+   R   
Sbjct: 111 HDKETH----PDKMIGLCGCMMQEPDVVATIQKKYRFVDMVFGTHNVFKLAEIYCNRIEA 166

Query: 146 GKRVVD----TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           G +VVD    T+  VED       V   +  K GV        GC+ FCT+C+VPY RG 
Sbjct: 167 GGQVVDIWKDTNLVVED-----LPVKKEFPFKSGVNIMF----GCNNFCTYCIVPYVRGR 217

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR    ++ E ++L + GV EI LLGQNVN++ GK L+ +  TF++LL  ++E+ G+ 
Sbjct: 218 ERSRQPEDIIREVKRLSEEGVKEIMLLGQNVNSY-GKTLE-KPMTFAELLQKVTEVDGIE 275

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+ TSHP+D+SD LI      + +  ++HLP+QSGS RIL  MNRR+T   Y +++D+
Sbjct: 276 RVRFMTSHPKDLSDELIDVIAANEKICRHIHLPMQSGSSRILNQMNRRYTKESYLELVDK 335

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           IR   P+I++++D IVGFPGET++DF  TMD+V+++ +  AF+F YS R GTP +   + 
Sbjct: 336 IRRQIPEISLTTDIIVGFPGETEEDFLETMDVVNRVRFDTAFTFIYSKRTGTPAATFEDH 395

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDAC--VGQIIEVLIEKHGKEKGKLV-GRSPWLQSV 438
             +     R   L K++ E  +S  + C   GQ++ VLIE   ++  +L+ GR      V
Sbjct: 396 ATKEEIQNRFDRLIKRVSE--ISGEEICRYKGQVMPVLIESVSEQNPELLTGRLSNNILV 453

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468
                   IG+I  V + + K     G LV
Sbjct: 454 HFKGDPSMIGEIRDVSLDECKGFYYMGNLV 483


>gi|261886073|ref|ZP_06010112.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Campylobacter
           fetus subsp. venerealis str. Azul-94]
          Length = 434

 Score =  264 bits (674), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 164/449 (36%), Positives = 242/449 (53%), Gaps = 20/449 (4%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRM-EDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           V ++ F+++ GC MNV DS  +  ++   + YE  N ++DADLI++NTC +REK   K++
Sbjct: 3   VKKKLFIETLGCAMNVRDSEHIIAELSQKENYEVTNIIEDADLILINTCSVREKPVHKLF 62

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S +G     K           + V GC A   G E+ +R+P V+ V+G +   ++   L 
Sbjct: 63  SEVGTYEKAKKKG------AKIGVCGCTASHLGSEVFKRAPYVDFVLGARNISKITTALN 116

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
             +F    ++ D S E  F        G  R     +F+ I  GCDK CT+C+VP TRG 
Sbjct: 117 TPKFVSVDINHDES-EYAF--------GDFRSSPYKSFVNIMIGCDKKCTYCIVPQTRGD 167

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG--EKCTFSDLLYSLSEIKG 259
           EIS     ++ E RK   +G  EI LLGQNVN + GK   G  E   FSDLL  +SE+ G
Sbjct: 168 EISIPKDIILKEVRKAASSGAKEIFLLGQNVNNY-GKRFSGTHENIDFSDLLNLISEVDG 226

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           + R+R+T+ HP  M D  +K       +   +H+P+QSGS+ ILK+M R +T   +    
Sbjct: 227 VERIRFTSPHPMHMDDKFLKEFSTNPKICKSMHMPLQSGSNEILKAMKRGYTKEWFLDRA 286

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            ++R +  D+ IS+D IV FPGE+D DF  TM +V+ I + Q FSFKYS R  TP ++M 
Sbjct: 287 LKLREICSDVTISTDIIVAFPGESDRDFADTMSVVESIKFEQMFSFKYSSRPLTPAASMT 346

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV 439
            QV+ ++ + RL  LQ +  E       A    I EV  E+  +    + GR+     V 
Sbjct: 347 NQVNSDIASRRLSTLQARHTEILDEIVKAQKNSIHEVYFEEL-RANSSVAGRTFNNFLVQ 405

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
            N     +G I+KV+ITD K   LYG+++
Sbjct: 406 TNGSEELLGKILKVKITDPKRMVLYGQII 434


>gi|307297843|ref|ZP_07577649.1| RNA modification enzyme, MiaB family [Thermotogales bacterium
           mesG1.Ag.4.2]
 gi|306917103|gb|EFN47485.1| RNA modification enzyme, MiaB family [Thermotogales bacterium
           mesG1.Ag.4.2]
          Length = 434

 Score =  264 bits (674), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 162/445 (36%), Positives = 258/445 (57%), Gaps = 23/445 (5%)

Query: 30  KSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRN 89
           +++GCQMN+ D+  M  +    G+E   S ++AD +++NTC +R K+ +K+Y  LG+++ 
Sbjct: 6   RTFGCQMNINDTEAMMGVLSKAGHEIAVSEEEADAVIVNTCAVRAKSEDKLYGKLGQLKA 65

Query: 90  LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149
           +K    K  G LLV V GCVA+    E+L     V+ V G +   R+ ELL RA  G+R 
Sbjct: 66  VK----KRKGRLLVGVCGCVAEKNALELLTHKE-VDFVFGTRAITRVDELLGRAESGERF 120

Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVT--AFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
           ++    +++       +D    R R     A++TI  GC+KFC++C+VPYTRG E SR++
Sbjct: 121 IEMGDFIDE-------LDSTTPRIRTSAHHAWITIIFGCNKFCSYCIVPYTRGREKSRNM 173

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
             ++ EAR+L  NG  EIT LGQNV+++ GK L+ +  + + L+    EI G+ R+ + T
Sbjct: 174 DDILSEARELAVNGYREITYLGQNVDSY-GKDLE-DGSSLAKLIRETIEINGIERIWFLT 231

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
           S+PRD SD LI      + +   +HLPVQSGS+RILK MNR +T   Y  ++ R+++   
Sbjct: 232 SYPRDFSDELIDVIASSEKVSRAIHLPVQSGSNRILKDMNRGYTREYYLDLLGRVKNRIQ 291

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT-PGSNMLEQVDENV 386
              +S+D I+GFPGET+ ++  T+ LV ++ + +     YSPR GT     M + V + V
Sbjct: 292 GATLSTDLIIGFPGETEKEYEETVSLVKEVRFERVNLAMYSPREGTLSAKKMKDDVPQEV 351

Query: 387 KAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
           K  R   LL +QK +  ++   N+  + + I+V+ E   K  GK+ GR+   + V+  ++
Sbjct: 352 KTRRLNDLLAIQKHINREE---NEKYLNETIDVIGEGKVKGNGKIYGRTMNNKIVIYEAE 408

Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468
              IG  +K+RI  V    LYG +V
Sbjct: 409 ADLIGQPVKIRIVRVSAGPLYGVIV 433


>gi|307942735|ref|ZP_07658080.1| protein YleA [Roseibium sp. TrichSKD4]
 gi|307773531|gb|EFO32747.1| protein YleA [Roseibium sp. TrichSKD4]
          Length = 239

 Score =  264 bits (674), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 129/216 (59%), Positives = 162/216 (75%)

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
           +L  LSEI+GL RLRYTTSHPRDM D LI+AH DL  LMPYLHLPVQSGSD+ILKSMNR+
Sbjct: 1   MLRRLSEIEGLDRLRYTTSHPRDMDDELIEAHRDLKSLMPYLHLPVQSGSDKILKSMNRK 60

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369
           HT  EY ++IDRIR   PDIA+S DFIVGFPGE+D DF  TMDL+ ++ Y  AFSFKYS 
Sbjct: 61  HTRDEYFRLIDRIREAAPDIALSGDFIVGFPGESDADFEDTMDLIRRVEYGSAFSFKYSQ 120

Query: 370 RLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV 429
           R GTPG+ M +QV E+VK  RL  LQ  L +QQ +FN + +G + +VL+EK G+  G+LV
Sbjct: 121 RPGTPGATMEDQVPEDVKTARLSELQALLTQQQKAFNASRLGMVCDVLLEKKGRLPGQLV 180

Query: 430 GRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYG 465
           G+SPWLQ V L++  + IG I  V I ++  ++L+G
Sbjct: 181 GKSPWLQPVQLDAPENLIGTIQAVEIIEIGSNSLFG 216


>gi|225567940|ref|ZP_03776965.1| hypothetical protein CLOHYLEM_04013 [Clostridium hylemonae DSM
           15053]
 gi|225163228|gb|EEG75847.1| hypothetical protein CLOHYLEM_04013 [Clostridium hylemonae DSM
           15053]
          Length = 477

 Score =  264 bits (674), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 155/376 (41%), Positives = 226/376 (60%), Gaps = 25/376 (6%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P  F V ++GCQMN  DS ++  +    GYE   + D+AD ++ NTC +RE A  +VY  
Sbjct: 40  PLTFCVTTFGCQMNARDSEKLRGILERIGYEEA-AEDEADFVIYNTCTVRENANTRVYGR 98

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQ-AEGEEILRRS-PIVNVVVGPQTYYRLPELL- 140
           LG+++     R      +++ + GC+ Q  E  E L++S   V++V G    Y+  EL+ 
Sbjct: 99  LGQLK----PRKSRNPHMMIGLCGCMMQEPEVVEKLKKSYRFVDLVFGTHNIYKFAELIV 154

Query: 141 ERARFGKRVVD----TDYSVED-KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
            R   G  V+D    TD  VED   ER       Y+ K GV     I  GC+ FC++C+V
Sbjct: 155 SRFESGGMVIDIWKDTDKIVEDLPNER------KYSFKSGVN----IMFGCNNFCSYCIV 204

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
           PY RG E SR+   ++ E   L+++GV E+ LLGQNVN++ GK LD    TF+ LL  + 
Sbjct: 205 PYVRGRERSRAPEAIIREIEHLVEDGVTEVMLLGQNVNSY-GKTLDT-PVTFAALLKEIE 262

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
           +I+GL R+R+ TSHP+D+SD LI+  G    +  +LHLPVQSGS  ILK MNR +T  +Y
Sbjct: 263 KIEGLERIRFMTSHPKDLSDELIEVMGSSHKICRHLHLPVQSGSTDILKKMNRHYTKEQY 322

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
            +++ +IR   P I++++D IVGFPGET++DF+ T+D+V ++ Y  AF+F YS R GTP 
Sbjct: 323 LELVRKIREAVPGISLTTDIIVGFPGETEEDFQETLDVVRRVRYDSAFTFIYSKRTGTPA 382

Query: 376 SNMLEQVDENVKAERL 391
           + M EQV   V  +R 
Sbjct: 383 AVMEEQVPGEVVKDRF 398


>gi|222823363|ref|YP_002574937.1| tRNA-i(6)A37 thiotransferase [Campylobacter lari RM2100]
 gi|222538585|gb|ACM63686.1| tRNA-i(6)A37 thiotransferase [Campylobacter lari RM2100]
          Length = 432

 Score =  263 bits (673), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 162/449 (36%), Positives = 245/449 (54%), Gaps = 20/449 (4%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRM-EDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++ F+++ GC MNV DS  M  ++   + YE      +ADLI++NTC +REK   K++
Sbjct: 1   MSKKLFIQTLGCAMNVRDSEHMIAELKEKENYELTQDAKEADLILINTCSVREKPVHKLF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S +G    +K +  K G      V GC A   G+EI +R+P V+ V+G +   ++ + + 
Sbjct: 61  SEVGSFEKIKKNGAKIG------VCGCTASHLGDEIFKRAPNVDFVLGARNVSKITKAVN 114

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
             +F    +D D S        +  D    R      ++ I  GCDK CT+C+VP+TRG 
Sbjct: 115 TPKFLGNDIDFDES------NYAFADF---RNSLYKTYVNISIGCDKHCTYCIVPHTRGD 165

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG--EKCTFSDLLYSLSEIKG 259
           EIS     +  EA K + NG  EI LLGQNVN + GK      EK  FSDLL  LSEI+G
Sbjct: 166 EISIPFEIIKKEALKAVANGAKEIFLLGQNVNNY-GKRFSNAHEKINFSDLLEKLSEIEG 224

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           L R+R+T+ HP  M D  ++       +   +H+P+QSGS  ILK+M R +T   Y    
Sbjct: 225 LERIRFTSPHPLHMDDRFLEVFSKNPKVCKSMHMPLQSGSSEILKAMKRGYTKEWYLDRA 284

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            ++RS+  D++IS+D IV FPGE+D DF  TMD+++K+ + Q FSFKYS R  T  + M 
Sbjct: 285 LKLRSMCKDVSISTDVIVAFPGESDKDFEDTMDVLEKVRFEQMFSFKYSKRPLTKAATMP 344

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV 439
            Q+ +++ ++RL  LQ +  E           +  EVL E+   E G + GRS     + 
Sbjct: 345 NQIPDDIASKRLSILQARHTEILDEIVAKQKDKEFEVLFEELRSE-GFVAGRSDNNFLIQ 403

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
           +      +G + KV+IT+ +   L GE++
Sbjct: 404 VKGSEELLGQMTKVKITNPRRMVLNGEIL 432


>gi|189502025|ref|YP_001957742.1| hypothetical protein Aasi_0614 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|229890438|sp|B3ES11|MIAB_AMOA5 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|189497466|gb|ACE06013.1| hypothetical protein Aasi_0614 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 486

 Score =  263 bits (673), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 164/458 (35%), Positives = 252/458 (55%), Gaps = 20/458 (4%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + +  +V+SYGCQMN+ DS  +  +    G+E  ++ + AD+I +NTC IR+KA + V  
Sbjct: 33  ITRNLYVESYGCQMNIADSEVVVSILRPHGFEITDTYEKADVIFINTCAIRDKAEQTVRK 92

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            L +   LK    +   DL++ V GC+A+   + +L    +V++V GP  Y  LP LL  
Sbjct: 93  RLSQFNQLK----RRNPDLVIGVLGCMAERLKQTLLEEEKLVDLVAGPDAYRDLPRLLAT 148

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
              G + ++T  S E+ +  +S +    N   GV+AF++I  GCD  C+FCVVP+TRG E
Sbjct: 149 VDSGHKAINTFLSREETYADISPIRLNSN---GVSAFISIMRGCDNMCSFCVVPFTRGRE 205

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNA--WRGKGLDGEKCT--------FSDLLY 252
            SR    +V EA +L + G  E+TLLGQNV++  W       E+ T        F+ LL 
Sbjct: 206 RSRDPYSIVKEATELFEQGYREVTLLGQNVDSYKWSPNTDKKEQPTTPQEGVVNFAQLLA 265

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
            +++I   +R+R++TSHP+D++D ++      D +  Y+HLPVQSGS R+LK MNR +  
Sbjct: 266 MVAQIHPDLRIRFSTSHPKDITDQVLYTIKAYDNICKYIHLPVQSGSSRVLKLMNRTYDR 325

Query: 313 YEYRQIIDRIRS-VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
             Y Q I+ IR  V  D  ISSD I GF  ET++D + T+ L++ I Y  ++ F YS R 
Sbjct: 326 AWYLQKIEDIRRIVGEDCGISSDMIAGFCTETEEDHQDTLSLMEHIKYEFSYMFYYSERP 385

Query: 372 GT-PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLV 429
           GT       + V   VK  RL  +  K R+     N   +G++ +VL+E   K+   +  
Sbjct: 386 GTLAARKYADDVPLAVKKRRLQEIIDKQRQHSFEKNLKDIGKVYQVLVEGPSKKSDIEWQ 445

Query: 430 GRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
           GR+   + VV  + +   G  + V IT+    TL GE+
Sbjct: 446 GRNSANKVVVFPNVDCKKGTYVDVLITNCTTGTLLGEI 483


>gi|160933105|ref|ZP_02080494.1| hypothetical protein CLOLEP_01948 [Clostridium leptum DSM 753]
 gi|156868179|gb|EDO61551.1| hypothetical protein CLOLEP_01948 [Clostridium leptum DSM 753]
          Length = 459

 Score =  263 bits (673), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 154/444 (34%), Positives = 241/444 (54%), Gaps = 15/444 (3%)

Query: 28  FVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRI 87
            V++YGCQ NV D  +++ M    G+      ++AD I+ NTC IRE A ++++  +G +
Sbjct: 28  MVRTYGCQQNVSDGEKIKGMLQQMGFGFTEDQEEADFILFNTCAIREHAEDRIFGNVGAL 87

Query: 88  RNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           + LK    +    L++ + GC+ + E   E I +  P V++V G  +    P+L+     
Sbjct: 88  KYLK----RRNPSLIIALCGCMMEQEHVVERIRKSYPFVSLVFGTHSLSSFPQLVYETLT 143

Query: 146 GKRVVDTDYSVEDKFERLSIV-DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
           G + V      +   E + +  DG +       A+L +  GCD FC++CVVPY RG E S
Sbjct: 144 GAKRVFQRGGEDTIDENIPVRRDGRFK------AWLPVMYGCDNFCSYCVVPYVRGRERS 197

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R    V+ EAR+LI+ G  +ITLLGQNVN++ GK L  E   F+ LL  +S+++G   LR
Sbjct: 198 REPEAVLKEARQLIEGGYKDITLLGQNVNSY-GKNLP-EPVNFAKLLKEISDMEGDYWLR 255

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           + TSHP+D +  LI        +  +LHLP QSG++R+LK MNRR+T  +Y +II   R 
Sbjct: 256 FMTSHPKDCTKELIDVMASSGHIAKHLHLPFQSGNNRVLKEMNRRYTREQYLEIIRYARE 315

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             P ++I+SD IVGFPGET ++F+ T+ L+ ++G+   ++F +SPR GTP + M + V  
Sbjct: 316 KMPGLSITSDVIVGFPGETYEEFQDTLSLIREVGFTALYTFIFSPRKGTPAAGMSDPVSH 375

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
             K      L K   E  V    + VG+ +  L+E+   + G L  R+    +V +    
Sbjct: 376 KEKTRWFAELLKVQEEISVRRCASMVGKTVRGLVEEEASKPGVLNARTEENVTVEIPGGP 435

Query: 445 HNIGDIIKVRITDVKISTLYGELV 468
             IG    + +TD     L G  +
Sbjct: 436 EMIGSFRNILVTDAGNWVLKGNCI 459


>gi|160903280|ref|YP_001568861.1| RNA modification protein [Petrotoga mobilis SJ95]
 gi|229890590|sp|A9BGV7|MIAB_PETMO RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|160360924|gb|ABX32538.1| RNA modification enzyme, MiaB family [Petrotoga mobilis SJ95]
          Length = 439

 Score =  263 bits (672), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 143/447 (31%), Positives = 251/447 (56%), Gaps = 17/447 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +F+++++GCQMN+ +S  M  +   +G+E   +  +AD+I++N+C +REKA  K+Y  +G
Sbjct: 2   KFYIRTFGCQMNINESEIMAGLLKEEGFEWTENPKEADIILINSCAVREKAENKMYGAIG 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
               LK+    E  +L++ V GC A+ E E +L R   ++ V G +    +  L++RA  
Sbjct: 62  GYGKLKD----ENKNLILGVGGCSAEKERENLLERFKNIDFVFGTRNVVDIGNLVKRALN 117

Query: 146 GKRVVDTDYSVED---KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           GKR  D    + D      ++ I            A++TI  GC+K+C++C+VPYTRG E
Sbjct: 118 GKRFADFSDKLNDVNYDIPKMPISKH--------HAWITIIYGCNKYCSYCIVPYTRGFE 169

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR +  ++ E       G  EIT LGQNV+++ GK    +K     L+   +E   + R
Sbjct: 170 KSRPMEDIIREVESYAKKGYKEITFLGQNVDSY-GKDFGDKKSKLDLLIQKAAEFDSIKR 228

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           + + TS+P D++D LI+   + +    Y HLP QSGS++ILK+MNR++T  E+ ++++++
Sbjct: 229 IWFLTSYPSDITDSLIQTVANEEKAANYFHLPAQSGSNKILKAMNRKYTREEFIELVNKV 288

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML-EQ 381
           +    ++ +SSDFI GFP ETD+DF  T+DL+ +  + +    +YSPR GT       + 
Sbjct: 289 KKEVANVTVSSDFITGFPSETDEDFEETVDLIKQCRFERINIAEYSPREGTIAYKYQNDD 348

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           V +++K +RL  L +  +   +  N+  + Q + ++ E    + G  +GR+   + ++  
Sbjct: 349 VPKHIKNKRLQYLMELQKRINLEENEKYLEQEVVIIQEGKAGKNGTYMGRTMNNKLIIFE 408

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
           S     G+ +KV++  +    LYGE+V
Sbjct: 409 SNEELNGEFLKVKVNKITPGPLYGEVV 435


>gi|317056657|ref|YP_004105124.1| RNA modification enzyme, MiaB family [Ruminococcus albus 7]
 gi|315448926|gb|ADU22490.1| RNA modification enzyme, MiaB family [Ruminococcus albus 7]
          Length = 465

 Score =  263 bits (672), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 159/445 (35%), Positives = 243/445 (54%), Gaps = 21/445 (4%)

Query: 28  FVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRI 87
           ++ SYGCQ NV D  +++ M    GY   +  D A LI+LNTC +RE A ++V+  +G  
Sbjct: 36  YIHSYGCQQNVSDGEKLKGMLDKIGYGFTDDTDTAQLILLNTCAVRENAEDRVFGNIGNF 95

Query: 88  RNLKNSRIKEGGDLLVVVAGCVAQAE--GEEILRRSPIVNVVVGPQTYYRLPELL-ERAR 144
           + LK    ++  DL++ + GC+AQ +   ++I      V++V G   Y     +L E   
Sbjct: 96  KKLK----EQNKDLVIGICGCMAQQKHVADKIKESYRQVDLVFGTFAYNEFYSMLWEIIS 151

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
             KR+ +      +  E ++ +     R     AF+ I  GC+ FCT+C+VPY RG E S
Sbjct: 152 KHKRLFNQSEVCTEIDESMTQL-----RDDKFRAFVPIMYGCNNFCTYCIVPYVRGRERS 206

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R    V+ E + L++ G  EITLLGQNVN++           F  LL  + +I+G  R+R
Sbjct: 207 RKPEAVLAEVKSLVEQGYKEITLLGQNVNSY--------AYGFPQLLKDIDKIQGKFRIR 258

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           + +SHP+D +  LI    D + +  +LHLPVQ+GSDR+LK+MNRR+T  +Y ++ID  R 
Sbjct: 259 FMSSHPKDATKELIDTIIDSEHICKHLHLPVQAGSDRVLKAMNRRYTTEKYLEMIDYARG 318

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             P  + ++D IVGFPGE+ ++F  T D++ ++ Y   +SF YS R GTP + M + + +
Sbjct: 319 RMPHFSFTTDLIVGFPGESYEEFCQTKDIIKRVKYDNIYSFVYSRRSGTPAAKMEDNISD 378

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVLNSK 443
             K   L  L  + RE    +    VGQ +EVL E  G+  +G L G++     V   + 
Sbjct: 379 KQKGLWLRELLLEQREITCEWFGRFVGQTVEVLAEGEGRTAEGWLTGKNDENIIVEFPAD 438

Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468
              IG+ +KVRI       L GELV
Sbjct: 439 KKYIGEFVKVRINKAMNWALSGELV 463


>gi|255280937|ref|ZP_05345492.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bryantella formatexigens
           DSM 14469]
 gi|255268385|gb|EET61590.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bryantella formatexigens
           DSM 14469]
          Length = 518

 Score =  263 bits (672), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 161/441 (36%), Positives = 243/441 (55%), Gaps = 14/441 (3%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
            K++GCQMN  DS ++  +    GY  +   + ADL++ NTC +RE A  KVY  LG + 
Sbjct: 87  TKTFGCQMNARDSEKLTGILELIGYT-ITEDEHADLVIYNTCTVRENANLKVYGRLGVLG 145

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
            +K    K+    L+ + GC+ Q     E+I +    V+++ G    Y+  ELL     G
Sbjct: 146 GMK----KKQPHKLIALCGCMMQEPEVVEKIRKSYRFVDLIFGTHNIYKFAELLAACLEG 201

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
             ++   +   DK      V+  Y  K GV     I  GC+ FC++C+VPY RG E SR 
Sbjct: 202 DGMIIDVWKDTDKIVENLPVERKYPFKSGVN----IMFGCNNFCSYCIVPYVRGRERSRE 257

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
             +++ E  +L  +GV E+ LLGQNVN++ GK L  E  +F+ LL  + +I G+ R+R+ 
Sbjct: 258 PREILREIERLAADGVVEVMLLGQNVNSY-GKNLP-EPMSFAQLLREVEKIDGIKRIRFM 315

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
           TSHP+D+SD LI+     + +  ++HLP+QSGS RILK MNRR+T  +Y  +++++R   
Sbjct: 316 TSHPKDLSDELIEVMASSEKICRHMHLPLQSGSSRILKIMNRRYTKEQYLALVEKLRRAI 375

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           PDI++++D IVGFPGET++DF  T+D+V +  Y  AF+F YS R GTP + M  QV E V
Sbjct: 376 PDISLTTDIIVGFPGETEEDFEETLDVVRRARYDSAFTFIYSKRTGTPAAAMENQVPEEV 435

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSVVLNSKNH 445
             ER   L   ++E          GQ + VL E+ + ++   L GR      V       
Sbjct: 436 VKERFDRLLALVQEISGEMAARLTGQTLPVLAEEVNSQDASLLTGRLSNNLLVHFPGDAS 495

Query: 446 NIGDIIKVRITDVKISTLYGE 466
            IG I+ V + + +     GE
Sbjct: 496 LIGKIVDVHLQECRGFYYMGE 516


>gi|167467943|ref|ZP_02332647.1| hypothetical protein YpesF_08599 [Yersinia pestis FV-1]
          Length = 321

 Score =  263 bits (671), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 134/286 (46%), Positives = 184/286 (64%), Gaps = 1/286 (0%)

Query: 184 EGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
           EGC+K+CTFCVVPYTRG E+SR    ++ E  +L   GV E+ LLGQNVNA+RG   DG+
Sbjct: 2   EGCNKYCTFCVVPYTRGEEVSRPSDDILFEIAQLAAQGVREVNLLGQNVNAYRGATYDGD 61

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
            C+F++LL  ++ I G+ R+R+TTSHP + +D +I  + D   L+ +LHLPVQSGSDRIL
Sbjct: 62  ICSFAELLRLVAAIDGIDRVRFTTSHPIEFTDDIIDVYRDTPELVSFLHLPVQSGSDRIL 121

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
             M R HTA EY+ II ++R  RPDI ISSDFIVGFPGET  DF  TM LV  I +  ++
Sbjct: 122 TMMKRAHTALEYKAIIRKLRQARPDIQISSDFIVGFPGETQQDFEQTMKLVADIHFDTSY 181

Query: 364 SFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK 423
           SF YSPR GTP +++   V E  K +RL  LQ+++ +Q +  +   VG +  VL+E   +
Sbjct: 182 SFIYSPRPGTPAADLPNNVSEEEKKQRLHILQQRISQQAMEISRKMVGTVQRVLVEGTSR 241

Query: 424 EK-GKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           +   +L GR+   + V        IG  + V I +V  S+L G L+
Sbjct: 242 KNVMELAGRTENNRVVNFEGSPDMIGKFVDVEIVNVYASSLRGILL 287


>gi|153951503|ref|YP_001398505.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Campylobacter jejuni
           subsp. doylei 269.97]
 gi|229890470|sp|A7H4S5|MIAB_CAMJD RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|152938949|gb|ABS43690.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Campylobacter jejuni
           subsp. doylei 269.97]
          Length = 433

 Score =  263 bits (671), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 158/447 (35%), Positives = 246/447 (55%), Gaps = 20/447 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRM-EDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ F+++ GC MNV DS  M  ++   + Y     + +ADLI++NTC +REK   K++S 
Sbjct: 4   KKLFIQTLGCAMNVRDSEHMIAELTQKENYALTEDIKEADLILINTCSVREKPVHKLFSE 63

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G    +K    KEG    + V GC A   G EI +R+P V+ V+G +   ++ + ++  
Sbjct: 64  VGGFEKVK----KEGAK--IGVCGCTASHLGNEIFKRAPYVDFVLGARNISKITQAIKTP 117

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           +F    +D DY  E +F      +  Y       +++ I  GCDK CT+C+VP+TRG EI
Sbjct: 118 KFMG--IDIDYD-ESEFAFADFRNSIYK------SYINISIGCDKHCTYCIVPHTRGDEI 168

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE--KCTFSDLLYSLSEIKGLV 261
           S   + +  EA+K ++ G  EI LLGQNVN + GK    E  K  FSDLL  LS I+ L 
Sbjct: 169 SIPFNIIHKEAQKAVEKGAKEIFLLGQNVNNY-GKRFRNEHKKMDFSDLLEELSTIEDLE 227

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+T+ HP  M D  ++   +   +   +H+P+QSGS  ILK+M R +T   Y     +
Sbjct: 228 RIRFTSPHPLHMDDKFLEVFANNPKVCKSMHMPLQSGSSEILKAMKRGYTKKWYLNRALK 287

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R + P+++IS+D IV FPGE++ DF  TMD+++K+ + Q FSFKYS R  T  + M  Q
Sbjct: 288 LRELCPNVSISTDIIVAFPGESEKDFEETMDVLEKVRFEQIFSFKYSKRPLTKAATMSNQ 347

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           +DE   + RL  LQ +  E           +  +VL E+  +    + GR+     V + 
Sbjct: 348 IDEETASRRLSTLQNRHSEILDEIVKKQENKTFKVLFEEL-RVGNSIAGRTDNNFLVQVE 406

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                +G   +V+IT+ K   LYGE++
Sbjct: 407 GSEELLGQFKEVKITNAKRMVLYGEII 433


>gi|325479264|gb|EGC82360.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Anaerococcus prevotii
           ACS-065-V-Col13]
          Length = 449

 Score =  263 bits (671), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 163/450 (36%), Positives = 260/450 (57%), Gaps = 21/450 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +++ + ++GCQMN +DS R+  +    GYE+  + + AD I+ NTC +RE A  K+Y  +
Sbjct: 14  KKYNITTFGCQMNEHDSERISYILEELGYEKTENRESADFILFNTCLVRENAELKLYGQV 73

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
             ++ LK    KE  + ++ V+GC+ Q     + I+ +   V+++ G +    L +L+ R
Sbjct: 74  SSLKKLK----KEHPEKIIAVSGCMMQTSTARQVIIDKHKEVDIIFGTKNINSLADLIFR 129

Query: 143 -ARFGKRVVD--TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
                +RV+D  TD  V+D F         YN      A++ I  GCD FC++C+VP +R
Sbjct: 130 YLETNERVIDISTD-DVKDDF-------VNYNTLNNFQAYVNIMRGCDNFCSYCIVPESR 181

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G E SR  S +++E   L+  G  E+TLLGQNVN++ G   D +  TF +LL  +S++ G
Sbjct: 182 GREESRRPSAILEEVEHLVSEGYKEVTLLGQNVNSY-GNKADFD-MTFPELLQKVSDVAG 239

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           L RLR+TTSHP+D+SD LI+   + D +  Y HLP+QSGS ++LK MNR++   +Y +  
Sbjct: 240 LKRLRFTTSHPKDLSDELIEVIKNNDNICKYFHLPLQSGSSKVLKDMNRKYDQEKYIERA 299

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            ++R   P IAIS+D IVG+P ET++DF  T+ +  +I Y  A++FKYSPR  T  +  L
Sbjct: 300 KKLRKEIPGIAISTDIIVGYPTETEEDFEETLKVCREIAYDSAYTFKYSPRPKTRAAK-L 358

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSV 438
             +++++  +R   L   L       N   +G+ +EVL+E   K     L GR+   + V
Sbjct: 359 TPIEDDIVQDRFDRLLDTLYPIFYEKNKQYIGKTVEVLLESESKNNPDILTGRTDTFKLV 418

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            + +    IG+ +KV+IT+    T+ GELV
Sbjct: 419 HVKADKKLIGEFVKVKITENTSFTISGELV 448


>gi|126291872|ref|XP_001381790.1| PREDICTED: hypothetical protein [Monodelphis domestica]
          Length = 653

 Score =  263 bits (671), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 153/431 (35%), Positives = 240/431 (55%), Gaps = 26/431 (6%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ ++++YGCQMNV D+     +    GY R N++ +AD+I+L TC IREKA + +++ L
Sbjct: 166 RKVYLETYGCQMNVNDAEIAWAILQKSGYLRTNTLHEADVILLVTCSIREKAEQAIWNRL 225

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R++ +K  R++    L + + GC+A+   EEIL R  +V++V GP  Y  LP LL  A 
Sbjct: 226 KRLKFIKARRLRSQVPLRIGILGCMAERLKEEILHREKLVDIVAGPDAYRDLPRLLSLAD 285

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G+R  +   S+E+ +  +  V    N     +AF++I  GCD  C++C+VP+TRG E S
Sbjct: 286 SGQRSANVLLSLEETYADIMPVQTSSN---ATSAFVSIMRGCDNMCSYCIVPFTRGRERS 342

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK---------------GLDGEKCT--- 246
           R ++ +++E +KL   G+ E+TLLGQNVN+++ K               G      T   
Sbjct: 343 RPIASILEEVKKLSQQGLKEVTLLGQNVNSYQDKSEMQFNNAMPTHLSRGFSENYKTKKG 402

Query: 247 ---FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
              F+DLL  +S +   +R+R+T+ HP+D  D +++   + + +   +HLP QSGS+R+L
Sbjct: 403 GLRFADLLDQVSRVDPEMRIRFTSPHPKDFPDEVLQLIQERNNICKQIHLPAQSGSNRVL 462

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           + M R +T   Y  +I  IR     + +SSDFI GF GET+DD   T+ L+ ++ Y   F
Sbjct: 463 ELMRRGYTREAYLDLIHHIRESVSGVNLSSDFIAGFCGETEDDHLQTLSLLQEVRYNVGF 522

Query: 364 SFKYSPRLGTPGSNMLE-QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422
            F YS R  T   + L+  V E VK  RL  L    RE     N A VG +  +L+E   
Sbjct: 523 LFAYSMRQKTRAYHRLQDDVPEEVKQRRLAELIAAFREGATEANMAMVGHMQLILVEGPS 582

Query: 423 KEK-GKLVGRS 432
           K    +L GR+
Sbjct: 583 KRSTTELCGRN 593


>gi|157736509|ref|YP_001489192.1| tRNA-methylthiotransferase [Arcobacter butzleri RM4018]
 gi|229890442|sp|A8ERE9|MIAB_ARCB4 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|157698363|gb|ABV66523.1| tRNA-methylthiotransferase [Arcobacter butzleri RM4018]
          Length = 436

 Score =  263 bits (671), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 152/450 (33%), Positives = 262/450 (58%), Gaps = 25/450 (5%)

Query: 25  QRFFVKSYGCQMNVYDSLRME-DMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ F+++ GCQMN  DS  ++ ++   +GY    +++DADLI++NTC +RE+  +K++S 
Sbjct: 5   KKLFIQTLGCQMNDTDSQHIQAELEKHKGYVTTQNIEDADLIIINTCSVRERPVQKLFSE 64

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G+     N + KEG    + V GC A   G++I++R+P V+ VVG +   ++ ++++  
Sbjct: 65  IGQF----NKKKKEGAK--IGVCGCTASHLGQDIIKRAPYVDFVVGARNISKIKDVVDVK 118

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
              +  +D D   E  +E  +     Y       A + I  GCDK CT+C+VP TRG EI
Sbjct: 119 GAVEVSIDND---ESTYEFSTAKTNKYR------ASVNISVGCDKKCTYCIVPSTRGEEI 169

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG-EKCTFSDLLYSLSEIKGLVR 262
           S     +V++ RK ++ G  E+ LLGQNVN++  K  D  EK TF+ LL  +S+I GL R
Sbjct: 170 SIPPEMIVEQVRKSVEQGAVEVMLLGQNVNSYGRKFSDKREKYTFTKLLQDVSKIDGLER 229

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+T+ HP  M D  I+       +   +H+P+QSGS  +LK+M R ++   +     ++
Sbjct: 230 IRFTSPHPLHMDDEFIEEFAKNPKISKCIHMPLQSGSTSVLKAMKRGYSKEWFLNRASKM 289

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE-Q 381
           R + P++ I++D IV FPGET +DF  T+D+V+++ + Q F+FKYSPR GT   N+ + +
Sbjct: 290 RELVPNLRITTDIIVAFPGETQEDFLDTLDVVEQVKFDQIFNFKYSPRPGTEALNLKDKE 349

Query: 382 VDENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSV 438
           + + + ++R   L+ L K+  E+ +      +G+ + +L+E   K  G++ G +     V
Sbjct: 350 LPDEIGSQRLIDLIELHKRYLEESMP---KLIGETLNILVESL-KPNGEVCGYTDNYLQV 405

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468
                +  +G  + V+ITDV  ++L GE+V
Sbjct: 406 FAKGSDELLGKFVNVKITDVTRTSLKGEVV 435


>gi|293977904|ref|YP_003543334.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Candidatus Sulcia
           muelleri DMIN]
 gi|292667835|gb|ADE35470.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Candidatus Sulcia
           muelleri DMIN]
          Length = 455

 Score =  262 bits (670), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 154/461 (33%), Positives = 260/461 (56%), Gaps = 29/461 (6%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++F++++YGCQMN+ DS  +  +  ++G+ +  ++ +A++I++NTC IR+K+ +K+   +
Sbjct: 4   KKFYIENYGCQMNISDSEIVSSILNNKGFIKTENLKEANIILINTCSIRDKSEKKILLRI 63

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            +I+ +    IK+  D+L+ + GC+A       ++   ++N+VVGP +Y  +P L+    
Sbjct: 64  NQIKFI----IKKNNDILIGILGCMASKFKN--IKEKKLINLVVGPDSYREIPNLINNF- 116

Query: 145 FGKR----VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           F K+     + T +S  + +    I+     +K  +TAF+TI  GCD  CTFCVVP+TRG
Sbjct: 117 FKKKGEYISISTSFSKTETYA--DIIPKREEKK--ITAFVTIMRGCDNMCTFCVVPFTRG 172

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA--WRGKGL----------DGEKCTFS 248
            E SR    ++ E + L   G  EI LLGQNV++  W G GL          + E   FS
Sbjct: 173 REKSRDPYSIIKECKFLFKKGYKEIILLGQNVDSYLWYGGGLKKKFKIKEIKNEEIINFS 232

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
            LL  ++    L+R+R+ TS+P DMSD ++        +  ++HLPVQSGS+RIL  MNR
Sbjct: 233 KLLELVAISVPLMRIRFCTSNPNDMSDNVLNVIKKYINICKHIHLPVQSGSNRILSLMNR 292

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
           +HT  +Y  +I++I+ + P+ ++S D I GF  E ++D   T++L++ + Y  ++ F YS
Sbjct: 293 KHTCEDYILLINKIKKIIPNCSLSCDIITGFCNENENDHNETLNLMNYVKYNFSYMFIYS 352

Query: 369 PRLGTPG-SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKG 426
            R+GT     +++ V  + K  RL  +    +      N   +G I ++LIE    K   
Sbjct: 353 HRIGTYAYKKLIDNVSLSTKKRRLTEIINLQKTHSYYRNRKYIGSIQDILIEGISTKNIN 412

Query: 427 KLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
              GR+     V+   KN+ IGD IKV+I +   +TL G++
Sbjct: 413 FFYGRNSGNDIVIFTKKNYKIGDFIKVKINNCTSATLVGDI 453


>gi|325474131|gb|EGC77319.1| hypothetical protein HMPREF9353_01669 [Treponema denticola F0402]
          Length = 451

 Score =  262 bits (670), Expect = 8e-68,   Method: Compositional matrix adjust.
 Identities = 156/458 (34%), Positives = 253/458 (55%), Gaps = 27/458 (5%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           +F ++YGCQMN  +S  ME +   +G+   +  +  DL+++NTC +R  A  +V   LG 
Sbjct: 3   YFFETYGCQMNQAESSSMEQVLIEKGWTDASDAEHCDLLIINTCSVRITAENRVLGRLGH 62

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
              LK  R        V++ GC+A+    EI +  P+++ VVG      LP++ +  +  
Sbjct: 63  FSGLKKKR-----KFFVLLIGCMAERLYTEIQKEFPLIDYVVGMFERNLLPQIFDEIK-- 115

Query: 147 KRVVDTDYSVEDKFERLS--IVDGGY-----NRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
            R+ D +Y  E     +    V G Y     +  +   +++ I  GC+ FCT+C+VPY R
Sbjct: 116 TRLKDDNYMAEFTHNNIEEKPVSGYYFAPLSHSPKSFQSYVPIMNGCNNFCTYCIVPYVR 175

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS---E 256
           G E+SR +++++ E  +L   GV EITLLGQNVN+++G+  +G    F  LL  ++   +
Sbjct: 176 GREVSRPVNEILQEITELSSRGVREITLLGQNVNSYKGEDGEGRVIDFPKLLTLIAREAD 235

Query: 257 IKGLVR-LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
              ++R +R+ +SHP+DMSD LI        L   +HLPVQ GSD ILK MNR +T   Y
Sbjct: 236 KTDMIRWIRFMSSHPKDMSDALIDTIAAEKRLCKLVHLPVQHGSDTILKRMNRVYTIEHY 295

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
           +  I R++   PDIA+S+D ++GFPGET+DD +A +DL+ +I +  AF + Y+PR GT  
Sbjct: 296 KNRIKRLKETIPDIALSTDILMGFPGETEDDVKAILDLMQEIEFDSAFMYHYNPREGTKA 355

Query: 376 SNMLEQVDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGR 431
            N  +++ E +K ERL   + LQ K+         A +G+ +++L+E H + E+ +L G 
Sbjct: 356 FNYPDRIPEEIKIERLGRVIDLQLKI---TAKKMKAKLGKKVDILVESHSRNERSELFGH 412

Query: 432 SPWLQSVVL--NSKNHNIGDIIKVRITDVKISTLYGEL 467
           +   +  V+  N     IG+     + ++K  T    L
Sbjct: 413 TEQGEMTVIQGNPPESLIGNFAHAELKELKGKTFRANL 450


>gi|108804264|ref|YP_644201.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Rubrobacter xylanophilus
           DSM 9941]
 gi|108765507|gb|ABG04389.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Rubrobacter xylanophilus
           DSM 9941]
          Length = 445

 Score =  262 bits (670), Expect = 8e-68,   Method: Compositional matrix adjust.
 Identities = 156/438 (35%), Positives = 239/438 (54%), Gaps = 30/438 (6%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           ++++GCQMNV+DS RM  M    GY  V   +DADL++LNTC++RE A  ++   LG + 
Sbjct: 33  IRTFGCQMNVHDSDRMRRMILDAGYAEVQRYEDADLVILNTCYVRENAVNRIRGHLGELN 92

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
            L+    +EG    V + GC+  ++    L+    +++V+G    Y L E +     G  
Sbjct: 93  RLR----REGRVKKVALTGCIGASDEAAELQEQYGIDLVLGTHNTYELAEFI-----GLP 143

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
            ++  Y+ E     L  V+G        +AF+TI  GC+  C++CVVP  RG  + R L 
Sbjct: 144 TMEETYTPE-----LPGVEGQK------SAFVTIMTGCNYRCSYCVVPRVRGRMVCRPLE 192

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
            V++E R+L+ +G   ITLLGQ V+AWR      E+  F DLL +++E     R+ +TTS
Sbjct: 193 NVLEEVRRLVRSGTNYITLLGQTVDAWRH-----ERRRFCDLLEAVAE--EAPRVWFTTS 245

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
           HP +M D  ++A G+ D ++  LHLPVQSGSDR+LK M+R + A  YR+ I+  R   PD
Sbjct: 246 HPSNMEDRTLRAIGERDTIVKKLHLPVQSGSDRMLKMMHRGYGADRYRRKIEVFREHVPD 305

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
             +S+D IVG PGET++D  AT+ L++   +  A+ FK+SPR GT  + M   V   V  
Sbjct: 306 GTLSTDIIVGHPGETEEDHEATLRLIEDCQFDSAYIFKFSPRRGTEAAQMEGAVPPGVVQ 365

Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVLNSKNHNI 447
            R L + + + +     N   VG   E+ I +HG+ + G+ +G + W    V        
Sbjct: 366 RRFLEVLRAVEQNAFRRNQRKVGGTEEIYI-RHGRSDSGRAIGET-WSGHAVHVDTEAGP 423

Query: 448 GDIIKVRITDVKISTLYG 465
           G+ ++ RI       LY 
Sbjct: 424 GEYVRARIESAGPHVLYA 441


>gi|94985469|ref|YP_604833.1| tRNA-i(6)A37 modification enzyme MiaB [Deinococcus geothermalis DSM
           11300]
 gi|123381901|sp|Q1IYM0|MIAB_DEIGD RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|94555750|gb|ABF45664.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Deinococcus geothermalis
           DSM 11300]
          Length = 459

 Score =  262 bits (670), Expect = 8e-68,   Method: Compositional matrix adjust.
 Identities = 169/452 (37%), Positives = 250/452 (55%), Gaps = 30/452 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R  + +YGCQMN YD+  +E    S G + V+S+D+AD +++NTC +R K  +KV S LG
Sbjct: 2   RAHLITYGCQMNEYDTHLVESQLVSFGADIVSSVDEADFVLINTCAVRGKPVDKVRSLLG 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQ-AEGEEILRRSPIVNVVVGPQTYYRLPELLE-RA 143
            +R  K  R      L+V + GC+AQ  EG++I R+   V+V++GP +   + + LE   
Sbjct: 62  DLRKQKAQR-----PLVVGMMGCLAQLEEGQQIARKFE-VDVLLGPGSLLDIGKALETNE 115

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           RF        + ++ K E    +      K  + A LTI  GCD  CT+C+VP TRG ++
Sbjct: 116 RF--------WGLQFKDELHGHIPPPPQGK--LQAHLTIMRGCDHHCTYCIVPTTRGPQV 165

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAW---RGKGLDGEKCTFSDLLYSLSEIKGL 260
           SR    ++ E   L+  GV E+TLLGQNVNA+   +G  L G   +F++LL  L    G+
Sbjct: 166 SRHPDDILRELDLLLAAGVQEVTLLGQNVNAYGVDQGARLAGYP-SFANLL-RLVGRSGI 223

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+++TTSHP + ++ +  A  +   +  Y+HLPVQSGS+R+L+ M R +T  +Y   I 
Sbjct: 224 RRVKFTTSHPMNFTEDVAAAMAETPAVCEYVHLPVQSGSNRVLRRMAREYTREKYLSHIA 283

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
            IR   PD+ +++D IVGFPGET++DF+ T+ L D++GY  A+ F YS R GTP      
Sbjct: 284 EIRRHLPDVVLATDIIVGFPGETEEDFQETLSLYDEVGYDAAYMFIYSARPGTPSYKHFA 343

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE----KGKLVGRSPWLQ 436
            +   VK ERL  L  K +E     N A VG I EVL+     +    +G   G  P   
Sbjct: 344 DLPREVKTERLQRLIAKQKEWSARKNAAKVGTIQEVLLRGDAHDAHFLEGHTRGNHP--- 400

Query: 437 SVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           +VV  +   +   I + RI       LYG L+
Sbjct: 401 TVVPKAAGASGPGIYRARIEHATPHMLYGRLI 432


>gi|315635668|ref|ZP_07890931.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Arcobacter butzleri JV22]
 gi|315479965|gb|EFU70635.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Arcobacter butzleri JV22]
          Length = 436

 Score =  261 bits (668), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 151/450 (33%), Positives = 262/450 (58%), Gaps = 25/450 (5%)

Query: 25  QRFFVKSYGCQMNVYDSLRME-DMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ F+++ GCQMN  DS  ++ ++   +GY    +++DADLI++NTC +RE+  +K++S 
Sbjct: 5   KKLFIQTLGCQMNDTDSQHIQAELEKHKGYVTTQNIEDADLIIINTCSVRERPVQKLFSE 64

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G+     N + KEG    + V GC A   G++I++R+P V+ VVG +   ++ ++++  
Sbjct: 65  IGQF----NKKKKEGAK--IGVCGCTASHLGQDIIKRAPYVDFVVGARNISKIKDVVDVK 118

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
              +  +D D   E  +E  +     Y       A + I  GCDK CT+C+VP TRG EI
Sbjct: 119 GAVEVSIDND---ESTYEFSTAKTNKYR------ASVNISVGCDKKCTYCIVPSTRGEEI 169

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG-EKCTFSDLLYSLSEIKGLVR 262
           S     +V++ RK ++ G  E+ LLGQNVN++  +  D  EK TF+ LL  +S+I GL R
Sbjct: 170 SIPPEMIVEQVRKSVEQGAVEVMLLGQNVNSYGRRFSDKREKYTFTKLLQDVSKIDGLER 229

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+T+ HP  M D  I+       +   +H+P+QSGS  +LK+M R ++   +     ++
Sbjct: 230 IRFTSPHPLHMDDEFIEEFAKNPKISKCIHMPLQSGSTSVLKAMKRGYSKEWFLNRASKM 289

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE-Q 381
           R + P++ I++D IV FPGET +DF  T+D+V+++ + Q F+FKYSPR GT   N+ + +
Sbjct: 290 RELVPNLRITTDIIVAFPGETQEDFLDTLDVVEQVKFDQIFNFKYSPRPGTEALNLKDKE 349

Query: 382 VDENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSV 438
           + + + ++R   L+ L K+  E+ +      +G+ + +L+E   K  G++ G +     V
Sbjct: 350 LPDEIGSQRLIDLIELHKRYLEESMP---KLIGETLNILVESL-KPNGEVCGYTDNYLQV 405

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468
                +  +G  + V+ITDV  ++L GE+V
Sbjct: 406 FAKGSDELLGKFVNVKITDVTRTSLKGEVV 435


>gi|291388708|ref|XP_002710877.1| PREDICTED: CDK5 regulatory subunit associated protein 1
           [Oryctolagus cuniculus]
          Length = 588

 Score =  261 bits (667), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 158/476 (33%), Positives = 258/476 (54%), Gaps = 38/476 (7%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ ++++YGCQMNV D+     +    GY R + + +AD+I+L TC IREKA + +++ L
Sbjct: 101 RKVYLETYGCQMNVNDTEIAWSILQKSGYLRTSDLQEADVILLVTCSIREKAEQTIWNRL 160

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            +++ LK  R++  G L + + GC+A+   EEIL R  +V+++ GP  Y  LP LL    
Sbjct: 161 RQLKALKTKRLRSRGPLRIGILGCMAERLKEEILNREKMVDLLAGPDAYRDLPRLLAVTE 220

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G++  +   S+++ +  +  V          +AF++I  GCD  C++C+VP+TRG E S
Sbjct: 221 SGQQAANVLLSLDETYADVMPVQASPG---ATSAFVSIMRGCDNMCSYCIVPFTRGRERS 277

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWR---------------GKGLDGEKCT--- 246
           R ++ +++E R+L + G+ E+TLLGQNVN++R                +G      T   
Sbjct: 278 RPVASILEEVRQLSEQGLKEVTLLGQNVNSFRDNSEIQFNNAVPTNLSRGFTTNYKTKQG 337

Query: 247 ---FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
              F+ LL  +S I   +R+R+T+ HP+D  D +++  G+ D +   +HLP QSGS R+L
Sbjct: 338 GLRFAHLLDQVSRIDPEMRIRFTSPHPKDFPDEVLQLIGERDNICKQIHLPAQSGSSRVL 397

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           ++M R ++   Y +++  IR   P +++SSDFI GF GET++D   T+ L+ ++ Y   F
Sbjct: 398 EAMRRGYSREAYVELVHHIRESIPGVSLSSDFIAGFCGETEEDHLQTVSLLREVRYNIGF 457

Query: 364 SFKYSPRLGTPGSNML-EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422
            F YS R  T   + L + V E VK  RL  L    RE+    N + VG+   VL+E   
Sbjct: 458 LFAYSMRQKTRAYHRLKDDVPEEVKLRRLEELITVFREEATKVNRSSVGRTELVLVEGLS 517

Query: 423 KEKGK-LVGRS--------PWLQSVVLNSKNHNI----GDIIKVRITDVKISTLYG 465
           K     L GR+        P ++   + S    +    GD + V+IT     TL G
Sbjct: 518 KRSASDLCGRNDGNLKVIFPDVEMEDVASPGLRVRAQPGDYVLVKITSASSQTLKG 573


>gi|317418553|emb|CBN80591.1| CDK5 regulatory subunit-associated protein 1 [Dicentrarchus labrax]
          Length = 569

 Score =  261 bits (667), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 155/476 (32%), Positives = 259/476 (54%), Gaps = 48/476 (10%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ + ++YGCQMNV D+     +   +GY+R   + +AD+++L TC IREKA + +++ L
Sbjct: 94  RKVYFETYGCQMNVNDTDIAWSILQRKGYQRTVDLREADVVLLVTCSIREKAEQTIWNRL 153

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             ++ +K  R+K    + + + GC+A+    EIL R  +V+V+ GP  Y  LP LL  A 
Sbjct: 154 QELKAMKKRRLKTHTPMKIGILGCMAERLKTEILEREKLVDVLAGPDAYRDLPRLLTVAD 213

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G++  +   S+E+ +  +  V   ++  +G +AF++I  GCD  C++C+VP+TRG E S
Sbjct: 214 GGQQASNVLLSLEETYADVMPV---HHAPQGRSAFVSIMRGCDNMCSYCIVPFTRGRERS 270

Query: 205 RSLSQVVDEARKLIDN--------GVCEITLLGQNVNAWRGKGLDGEKCT---------- 246
           R +S +++E R L +         GV E+TLLGQNVN++R    + + C+          
Sbjct: 271 RPVSSILEEVRMLSEQASYNLNTKGVKEVTLLGQNVNSYRDTS-EEQFCSSDLTQLSRGF 329

Query: 247 ------------FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP 294
                       FSDLL  +S I   +R+R+T+ HP+D  D ++    +   +   +HLP
Sbjct: 330 KTVYRTKQGGLRFSDLLDRVSRIDPDMRIRFTSPHPKDFPDEVLHLIAERGNICQQIHLP 389

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
            QSGS ++L++M R +T   Y  ++  I+++ P++++SSDFI GF GET+DD + T+ L+
Sbjct: 390 AQSGSSKVLEAMRRGYTREAYLDLVKNIKAIMPEVSLSSDFISGFCGETEDDHQQTLSLI 449

Query: 355 DKIGYAQAFSFKYSPRLGTPGSNMLE-QVDENVKAERLLCLQKKLREQQVSFNDACVGQI 413
            ++GY   F F YS R  T   + L+  V   VK +RL    +  RE+    N A +G +
Sbjct: 450 REVGYNVGFLFAYSMRKKTHAFHRLQDDVPAEVKQQRLAECIRVFREEAARVNAALIGSM 509

Query: 414 IEVLIEKHGKEKGK-LVGRSPWLQSVVL------------NSKNHNIGDIIKVRIT 456
             VL+E   K   K L GR+     V+             N+   N GD + V+++
Sbjct: 510 QLVLVEGESKRSAKDLCGRTDGNMKVIFPKEDVAAQNAESNTAPVNAGDYVLVKVS 565


>gi|50758889|ref|XP_417464.1| PREDICTED: hypothetical protein [Gallus gallus]
          Length = 562

 Score =  261 bits (667), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 160/478 (33%), Positives = 254/478 (53%), Gaps = 38/478 (7%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + ++++YGCQMNV D+     +    GY R    D+AD+I+L TC +R+KA + +++ L 
Sbjct: 76  KVYLETYGCQMNVNDTEIAWAILQKSGYTRTKEADEADVILLVTCSVRDKAEQTIWNRLQ 135

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            ++ LK  R +    L + + GC+A+   EEIL R  +V++V GP  Y  LP LL  A  
Sbjct: 136 HLKALKARRHQACLPLRIGILGCMAERLKEEILHREKLVDIVAGPDAYRDLPRLLAMAES 195

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G++  +   S+++ +  +  V        G TAF++I  GCD  C++C+VP+TRG E SR
Sbjct: 196 GQQAANVLLSLDETYADILPVQTSAG---GKTAFVSIMRGCDNMCSYCIVPFTRGRERSR 252

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWR---------------GKGLDGEKCT---- 246
            ++ ++ E + L D GV E+TLLGQNVN++R                +G      T    
Sbjct: 253 PIASILQEVKMLSDQGVKEVTLLGQNVNSFRDMSEVQFQSAAAPVLSRGFSTVYKTKPGG 312

Query: 247 --FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304
             F+ LL  +S I   +R+R+T+ HP+D  D +++   +   +   LHLP QSGS R+L+
Sbjct: 313 LRFAHLLDQVSRIDPEMRIRFTSPHPKDFPDEVLQLIQERHNICKQLHLPAQSGSTRVLE 372

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
           +M R +T   Y +++  +R+  P +++SSDFI GF GET++D + T+ L+ ++ Y   F 
Sbjct: 373 AMRRGYTREAYLELVQHVRNTIPGVSLSSDFIAGFCGETEEDHQQTVSLLREVRYNIGFL 432

Query: 365 FKYSPRLGTPGSNMLE-QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK 423
           F YS R  T   + L+  V  +VK  RL  L    RE+    N+A VGQ   VL+E   K
Sbjct: 433 FAYSMRQKTRAYHRLQDDVPADVKQRRLEELITVFREEAARANEAMVGQSQLVLVEGPSK 492

Query: 424 EKG-KLVGRSPWLQSVVLNSKN------------HNIGDIIKVRITDVKISTLYGELV 468
               +L GR+     V+    +               GD + V++T     TL G L+
Sbjct: 493 RSASELCGRNDGNIKVIFPDADTEDAGGCKALVRAQPGDYVLVKVTSASSQTLKGVLL 550


>gi|326932093|ref|XP_003212155.1| PREDICTED: CDK5 regulatory subunit-associated protein 1-like
           [Meleagris gallopavo]
          Length = 541

 Score =  261 bits (667), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 162/488 (33%), Positives = 258/488 (52%), Gaps = 38/488 (7%)

Query: 16  QIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREK 75
            IV +  V +  ++++YGCQMNV D+     +    GY R    D+AD+I+L TC +R+K
Sbjct: 45  HIVGKLTVGRELYLETYGCQMNVNDTEIAWAILQKSGYTRTKEADEADVILLVTCSVRDK 104

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135
           A + +++ L  ++ LK  R +    L + + GC+A+   EEIL R  +V++V GP  Y  
Sbjct: 105 AEQAIWNRLQHLKALKARRRQACLPLRIGILGCMAERLKEEILHREKLVDIVAGPDAYRD 164

Query: 136 LPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
           LP LL  A+ G++  +   S+++ +  +  V        G TAF++I  GCD  C++C+V
Sbjct: 165 LPRLLAVAQSGQQAANVLLSLDETYADILPVQTSAG---GKTAFVSIMRGCDNMCSYCIV 221

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR---------------GKGL 240
           P+TRG E SR ++ ++ E + L D GV E+TLLGQNVN++R                +G 
Sbjct: 222 PFTRGRERSRPIASILQEVKILSDQGVKEVTLLGQNVNSFRDMSEVQFQSAAAPVLSRGF 281

Query: 241 DG------EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP 294
                       F+ LL  +S I   +R+R+T+ HP+D  D +++   +   +   LHLP
Sbjct: 282 STVYKAKPGGLRFAHLLDQVSRIDPEMRIRFTSPHPKDFPDEVLQLIQERHNICKQLHLP 341

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
            QSGS R+L++M R +T   Y +++  +R+  P +++SSDFI GF GET++D + T+ L+
Sbjct: 342 AQSGSTRVLEAMRRGYTREAYLELVQHVRNSIPGVSLSSDFIAGFCGETEEDHQQTVSLL 401

Query: 355 DKIGYAQAFSFKYSPRLGTPGSNMLE-QVDENVKAERLLCLQKKLREQQVSFNDACVGQI 413
            ++ Y   F F YS R  T   + L+  V  +VK  RL  L    RE+    N+A VGQ 
Sbjct: 402 REVRYNVGFLFAYSMRQKTRAYHRLQDDVPADVKRRRLEELITVFREEAARANEAMVGQS 461

Query: 414 IEVLIEKHGKEKG-KLVGRSPWLQSVVLNSKN------------HNIGDIIKVRITDVKI 460
             VL+E   K    +L GR+     V+    +               GD + V++T    
Sbjct: 462 QLVLVEGPSKRSASELCGRNDGNIKVIFPDADTEDAGGCKALVRAQPGDYVLVKVTSASS 521

Query: 461 STLYGELV 468
            TL G L+
Sbjct: 522 QTLKGILL 529


>gi|302037248|ref|YP_003797570.1| isopentenyl-adenosine A37 tRNA methylthiolase MiaB [Candidatus
           Nitrospira defluvii]
 gi|300605312|emb|CBK41645.1| Isopentenyl-adenosine A37 tRNA methylthiolase MiaB [Candidatus
           Nitrospira defluvii]
          Length = 452

 Score =  261 bits (667), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 158/452 (34%), Positives = 242/452 (53%), Gaps = 25/452 (5%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P    ++++GCQMN YDS  +  +    G+E     + AD++++NTC IRE A  KVY  
Sbjct: 7   PHTVHIETFGCQMNEYDSELVRSLLRKAGFEFTEDRERADVMLMNTCAIRENAHNKVYGH 66

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL--- 140
           L  ++ +K  R      L+V V GC+AQ   EE+  + P+V+V+VGP  Y +LP LL   
Sbjct: 67  LAELKAVKEQR-----PLVVGVLGCMAQNLKEELTEKQPLVDVLVGPDGYRQLPGLLTNA 121

Query: 141 ---ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197
              E     +R +  D S  + ++     D    R     A++ I  GCD FC+FCVVPY
Sbjct: 122 LNAEEQGLARRGMAVDLSEYETYD-----DILPERDCSSNAWIAIMRGCDNFCSFCVVPY 176

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257
           TRG E SR    ++ E    +  G  +ITLLGQNVN++R +  D     F+ L+ +++E+
Sbjct: 177 TRGRERSRDPQGILREVEASVATGHTQITLLGQNVNSYRYEDWD-----FARLILAVAEV 231

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
            G+ R+R+T+ HP+D    L+ A      +  ++HLP+QSG+DRIL+ MNR ++  EY  
Sbjct: 232 PGVRRVRFTSPHPKDFPAALLDAVAGHPNICKHIHLPLQSGNDRILELMNRTYSRKEYLD 291

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
           +   IR   P IA+++D I GF  ET+++F  T  +V+++ Y  A+ FKYS R  T  + 
Sbjct: 292 LAAHIRRRHPGIALTTDIICGFCSETEEEFLDTYRVVEEVQYHSAYVFKYSERKNTIAAR 351

Query: 378 ML-EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLVGRSPWL 435
              + V E VK ER+  L    R      N   +GQ + V++E   K    + +GR+   
Sbjct: 352 KFPDDVPEAVKGERVSRLVDLQRPITARLNRELIGQTLPVMVEGDSKRSTDQWMGRTDTG 411

Query: 436 QSVVLNSKNHN--IGDIIKVRITDVKISTLYG 465
             V+ N  +    +G I  V I D   + L G
Sbjct: 412 VYVIWNKSDAPALLGSIQPVTILDGSAAVLMG 443


>gi|115313109|gb|AAI24421.1| Zgc:162738 protein [Danio rerio]
          Length = 555

 Score =  261 bits (667), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 162/478 (33%), Positives = 248/478 (51%), Gaps = 39/478 (8%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ + ++YGCQMN  D+     +    GY R   +  AD+++L TC IREKA + +++ L
Sbjct: 68  RKVYFETYGCQMNTNDTEIAWSILQKAGYSRTLELQKADVVLLVTCSIREKAEQTIWNRL 127

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             +   K    K    L + V GC+A+    E+L +  +V+V+ GP  Y  LP LL  A 
Sbjct: 128 KHLTASKKRIQKHKRSLTIGVLGCMAERLKSELLDQEKLVDVLAGPDAYRDLPRLLSLAH 187

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G+R  +   S+E+ +  +  V   +    G +AF++I  GCD  C++C+VP+TRG E S
Sbjct: 188 GGQRASNVLLSLEETYADVIPV---HQTLEGHSAFVSIMRGCDNMCSYCIVPFTRGRERS 244

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT------------------ 246
           R +S +V+E R L D GV EITLLGQNVN++R        C+                  
Sbjct: 245 RPMSSIVEEVRMLSDQGVKEITLLGQNVNSYRDLSKLQFSCSERNTQLSRGFQSVYRTKQ 304

Query: 247 ----FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
               F+DLL  +S I   +R+R+T+ HP+D  D +++   +   +  +LHLP QSGS RI
Sbjct: 305 GGLRFADLLDRVSLINPNMRIRFTSPHPKDFPDEVLQLIQERSNICKHLHLPAQSGSSRI 364

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           L +M R +T   Y ++++ IR + P +++SSDFI GF  ET++D + T+ L+ ++GY   
Sbjct: 365 LHAMRRGYTREAYLELVENIRKIIPGVSLSSDFIAGFCSETEEDHQQTISLLKEVGYNIG 424

Query: 363 FSFKYSPRLGTPGSNMLE-QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-K 420
           F F YS R  T   + LE  V   VK  RL  L    RE+    N   +G I  VL+E K
Sbjct: 425 FFFTYSMRKKTHAYHRLEDNVPAPVKKRRLEELISVFREKATKVNMTLIGNIQLVLVEGK 484

Query: 421 HGKEKGKLVGRSPWLQSVVLNSKNHNI------------GDIIKVRITDVKISTLYGE 466
             +   +L GR+     V+    N  +            GD + V+IT     +L G 
Sbjct: 485 SKRSSEELCGRNDGNVKVIFPKTNLPVQPEKTQMACITPGDYVLVKITSANSQSLRGH 542


>gi|160333602|ref|NP_001103849.1| CDK5 regulatory subunit-associated protein 1 [Danio rerio]
 gi|159155698|gb|AAI54732.1| Zgc:162738 protein [Danio rerio]
          Length = 577

 Score =  261 bits (666), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 162/478 (33%), Positives = 248/478 (51%), Gaps = 39/478 (8%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ + ++YGCQMN  D+     +    GY R   +  AD+++L TC IREKA + +++ L
Sbjct: 90  RKVYFETYGCQMNTNDTEIAWSILQKAGYSRTLELQKADVVLLVTCSIREKAEQTIWNRL 149

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             +   K    K    L + V GC+A+    E+L +  +V+V+ GP  Y  LP LL  A 
Sbjct: 150 KHLTASKKRIQKHKRSLTIGVLGCMAERLKSELLDQEKLVDVLAGPDAYRDLPRLLSLAH 209

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G+R  +   S+E+ +  +  V   +    G +AF++I  GCD  C++C+VP+TRG E S
Sbjct: 210 GGQRASNVLLSLEETYADVIPV---HQTLEGHSAFVSIMRGCDNMCSYCIVPFTRGRERS 266

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT------------------ 246
           R +S +V+E R L D GV EITLLGQNVN++R        C+                  
Sbjct: 267 RPMSSIVEEVRMLSDQGVKEITLLGQNVNSYRDLSKMQFSCSERNTQLSRGFQSVYRTKQ 326

Query: 247 ----FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
               F+DLL  +S I   +R+R+T+ HP+D  D +++   +   +  +LHLPVQSGS RI
Sbjct: 327 GGLRFADLLDRVSLINPNMRIRFTSPHPKDFPDEVLQLIQERSNICKHLHLPVQSGSSRI 386

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           L +M R +T   Y ++++ IR + P +++SSDFI GF  ET++D + T+ L+ ++GY   
Sbjct: 387 LHAMRRGYTREAYLELVENIRKIIPGVSLSSDFIAGFCSETEEDHQQTISLLKEVGYNIG 446

Query: 363 FSFKYSPRLGTPGSNMLE-QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-K 420
           F F YS R  T   + LE  V   VK  RL  L    RE+    N   +G    VL+E K
Sbjct: 447 FFFTYSMRKKTHAYHRLEDNVPAPVKKRRLEELISVFREKATKVNMTLIGNTQLVLVEGK 506

Query: 421 HGKEKGKLVGRSPWLQSVVLNSKNHNI------------GDIIKVRITDVKISTLYGE 466
             +   +L GR+     V+    N  +            GD + V+IT     +L G 
Sbjct: 507 SKRSSEELCGRNDGNVKVIFPKTNLPVQPEKTQMACITPGDYVLVKITSANSQSLRGH 564


>gi|238916920|ref|YP_002930437.1| 2-alkenal reductase [Eubacterium eligens ATCC 27750]
 gi|238872280|gb|ACR71990.1| 2-alkenal reductase [Eubacterium eligens ATCC 27750]
          Length = 473

 Score =  261 bits (666), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 156/444 (35%), Positives = 244/444 (54%), Gaps = 15/444 (3%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V ++GCQMN  DS ++  +    GY      D +D ++ NTC +RE A  KVY  LG ++
Sbjct: 39  VHTFGCQMNARDSEKLLGVLKEIGYLETEDEDKSDFVIYNTCTVRENANLKVYGRLGHLK 98

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELL-ERARF 145
           N+K    ++   +L+ + GC+ Q     E+I      V++V G    Y + +L+  R   
Sbjct: 99  NVK----RKNPHMLIAMCGCMMQEPDVVEKIRDSYKFVDIVFGTFNIYAMAKLIYNRITS 154

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G +V+D     +D  E L        RK    + + I  GC+ FCT+C+VPY RG EISR
Sbjct: 155 GSQVIDIWEKTKDIVEELPT-----ERKFPFKSGVNIMYGCNNFCTYCIVPYVRGREISR 209

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
               ++ E  +L+ +GV E+ LLGQNV+++ GK LD    +F+ LL  + +I+GL R+R+
Sbjct: 210 EPKDIIMEIERLVKDGVKEVMLLGQNVDSY-GKTLDN-PVSFAQLLREIDKIEGLERIRF 267

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
            T HP+D+ +  ++   D   +  ++H P+QSGS R+LK MNR++T   Y + ++ IR +
Sbjct: 268 MTPHPKDIEEETLEVIRDSKKICNHIHFPLQSGSSRLLKLMNRKYTKEHYLEQVEMIRRI 327

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            PD++I++D IVGFPGET++DF  T+D+V K  +  A++F YS R GTP + M  QV E+
Sbjct: 328 LPDVSITTDIIVGFPGETEEDFEDTIDVVKKAKFDSAYTFIYSKRTGTPAARMENQVPED 387

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSPWLQSVVLNSKN 444
           V  +R   L   + E          G  ++VL+E K   E+G + GR      V      
Sbjct: 388 VVKDRFNRLLATVNEVSHEHIRRYEGMDMKVLVEGKDDHEEGFVTGRMTNNILVHFAGDE 447

Query: 445 HNIGDIIKVRITDVKISTLYGELV 468
             IG I+ V + + K     G L+
Sbjct: 448 SLIGQIVTVHLDECKGFYYMGRLI 471


>gi|325283155|ref|YP_004255696.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Deinococcus proteolyticus MRP]
 gi|324314964|gb|ADY26079.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Deinococcus proteolyticus MRP]
          Length = 459

 Score =  261 bits (666), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 164/453 (36%), Positives = 246/453 (54%), Gaps = 32/453 (7%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +  V +YGCQMN YD+  ++    S G + V  +D AD ++LNTC +R K  +KV S LG
Sbjct: 2   KAHVVTYGCQMNEYDTHLVQSQLVSLGADMVEDIDSADFVLLNTCAVRGKPVDKVRSVLG 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQ-AEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            +R  K  R      L+V + GC+AQ  EG++I R+   V+V++GP +   + + LE   
Sbjct: 62  ELRKEKAKR-----PLVVGMMGCLAQLEEGQQIARKFE-VDVLIGPGSLLDIGKALES-- 113

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNR-----KRGVTAFLTIQEGCDKFCTFCVVPYTR 199
                        ++F  L+  D  +       +  + A LTI  GCD  CT+C+VP TR
Sbjct: 114 ------------NERFWALNFRDELHGHIPPAPQGKLQAHLTIMRGCDHHCTYCIVPTTR 161

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW---RGKGLDGEKCTFSDLLYSLSE 256
           G ++SRS   ++ E    +  GV E+TLLGQNVNA+   +G  L G   +F+DLL  +  
Sbjct: 162 GPQVSRSPDDILRELDMQLAAGVREVTLLGQNVNAYGVDQGARLAGYP-SFADLLRMVG- 219

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
             G+ R+++TTSHP + ++ + +A  +   +  ++HLPVQSGSDR+L+ M R +   +Y 
Sbjct: 220 ASGIERIKFTTSHPMNFTEDVAQAMAETPAVCEFIHLPVQSGSDRVLRRMAREYNREKYL 279

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
             I++IR   PD  + +D IVGFPGET++DF+ T+DL D++GY  A+ F YS R GTP  
Sbjct: 280 THIEQIRRHMPDAVLYTDIIVGFPGETEEDFQQTLDLYDEVGYDSAYMFIYSARPGTPSY 339

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQ 436
                +   VK ERL  L  K ++       A VG + EVL+       G L G +    
Sbjct: 340 KHFTDLPREVKTERLQRLIAKQKDWSARRFAAKVGTVQEVLVRGDAYSPGFLEGHTRGQH 399

Query: 437 -SVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            +VV  +       I +VRI       LYG++V
Sbjct: 400 PTVVPKAVGAEGAGIYQVRINHATPHMLYGQVV 432


>gi|296199816|ref|XP_002806791.1| PREDICTED: LOW QUALITY PROTEIN: CDK5 regulatory subunit-associated
           protein 1-like [Callithrix jacchus]
          Length = 538

 Score =  261 bits (666), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 161/488 (32%), Positives = 265/488 (54%), Gaps = 39/488 (7%)

Query: 17  IVDQCIVPQR-FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREK 75
           ++D+ +  QR  ++++YGCQMNV D+     +    GY R +++ +AD+I+L TC IREK
Sbjct: 42  MMDELLGRQRKVYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCSIREK 101

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135
           A + +++ L +++ LK  R++    L + + GC+A+   EEIL R  +V+V+ GP  Y  
Sbjct: 102 AEQTIWNRLHQLKALKTRRLRSRVPLRIGILGCMAERLKEEILNREKMVDVLAGPDAYRD 161

Query: 136 LPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
           LP LL  A  G++  +   S+++ +  +  V    +     +AF++I  GCD  CT+C+V
Sbjct: 162 LPRLLAVAESGQQAANVLLSLDETYADVMPVQTSPS---ATSAFVSIMRGCDNMCTYCIV 218

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR---------------GKGL 240
           P+TRG E SR ++ +++E RKL + G+ E+TLLGQNVN++R                +G 
Sbjct: 219 PFTRGRERSRPVASILEEVRKLSEQGLKEVTLLGQNVNSFRDSSEVQFNSAVSTNLSRGF 278

Query: 241 DGEKCT------FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP 294
                T      F+ LL  +S +   +R+R+T+ HP+D  D +++   + D +   +HLP
Sbjct: 279 TANCKTKQGGLRFAHLLDQVSRVDPEMRIRFTSPHPKDFPDEVLQLIHERDNICKQIHLP 338

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
            QSGS R+L++M R ++   Y  ++  IR   P +++SSDFI GF GET++D   T+ L+
Sbjct: 339 AQSGSSRVLEAMRRGYSREAYVALVHHIRESIPGVSLSSDFIAGFCGETEEDHVQTVSLL 398

Query: 355 DKIGYAQAFSFKYSPRLGTPGSNML-EQVDENVKAERLLCLQKKLREQQVSFNDACVGQI 413
            ++ Y   F F YS R  T   + L + V E VK  RL  L    RE+    N   VG  
Sbjct: 399 REVQYNMGFLFAYSMRQKTRAYHRLKDDVPEEVKLRRLEELITVFREEATKANQTAVGCT 458

Query: 414 IEVLIEKHGKEKGK-LVGRSPW-LQSVVLNSKNHNI-----------GDIIKVRITDVKI 460
             VL+E   K     L GR+   L+ +  +++  ++           GD + V+IT    
Sbjct: 459 QLVLVEGLSKRSAADLCGRNDGNLKVIFPDAEMEDVSNPGLRVRAQPGDYVLVQITSAGS 518

Query: 461 STLYGELV 468
            TL G ++
Sbjct: 519 QTLKGHVL 526


>gi|242309674|ref|ZP_04808829.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489]
 gi|239523675|gb|EEQ63541.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489]
          Length = 438

 Score =  261 bits (666), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 157/460 (34%), Positives = 250/460 (54%), Gaps = 36/460 (7%)

Query: 23  VPQRFFVKSYGCQMNVYDS----LRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAE 78
           + ++ F+++ GC MN  DS      +ED    + Y    +  +ADLI++NTC +REK  +
Sbjct: 1   MSKKLFIETLGCAMNERDSEHIIAELED---KENYTLTQNPKEADLILINTCSVREKPEK 57

Query: 79  KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPE 138
           K++S +G+   +K    K G      + GC A   GE IL+RS  V+ V+G +   ++ +
Sbjct: 58  KLFSEIGQYAKIKKENAKIG------ICGCTASHLGENILKRSKAVDFVLGARNVSKISQ 111

Query: 139 LLERARFGKRVVDTDYSVEDKFERLSIVDGGY----NRKRGVTAFLTIQEGCDKFCTFCV 194
           +L + R     VD DY            D  Y     +   +   + I  GCDK CT+C+
Sbjct: 112 ILHQGRVA--WVDIDYD-----------DSTYVFSNKQNSSLKGMINISIGCDKQCTYCI 158

Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-RGKGLDGEKCTFSDLLYS 253
           VP+TRG EIS     ++DEA+KL D G  EI LLGQNVN + R       K  F+ LL  
Sbjct: 159 VPHTRGNEISIPTHLILDEAKKLADKGTKEILLLGQNVNNYGRRFSSPHRKINFTQLLRE 218

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
           +SEI G+ R+R+T+ HP  M D  I+       +   +H+P+QSGS +IL+ M R ++  
Sbjct: 219 ISEIDGIQRIRFTSPHPLHMDDEFIEEVAKNPKICKAIHMPLQSGSTKILQKMKRGYSKE 278

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
            +   ++++RS+ P ++IS+D IVGFP E+++DF  T+D+++K+ +   +SF YS R  T
Sbjct: 279 WFLNRVEKMRSLIPHLSISTDIIVGFPTESEEDFLETLDVLEKVRFDTMYSFIYSTRPHT 338

Query: 374 PGSNMLEQ-----VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL 428
             +  LE      VDE +   RL  L+ + +E     N   +G+I  VL E +  +   L
Sbjct: 339 QAATWLENNEISLVDEEIAKNRLAILKDRHKEILTQDNAKQIGKIHSVLFESYDAQNMLL 398

Query: 429 VGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            GRS   + + + +  + IG+I  +RI++ K + L GEL+
Sbjct: 399 EGRSDTNKLIRVKAGRNLIGEIHSIRISETKGAQLIGELL 438


>gi|115497176|ref|NP_001069114.1| CDK5 regulatory subunit-associated protein 1 [Bos taurus]
 gi|115304933|gb|AAI23653.1| CDK5 regulatory subunit associated protein 1 [Bos taurus]
 gi|296481106|gb|DAA23221.1| CDK5 regulatory subunit associated protein 1 [Bos taurus]
          Length = 589

 Score =  260 bits (665), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 157/479 (32%), Positives = 258/479 (53%), Gaps = 38/479 (7%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +R ++++YGCQMNV D+     +    GY R +++ +AD+I+L TC IREKA + +++ L
Sbjct: 102 RRVYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCSIREKAEQTIWNRL 161

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            ++++LK+ R++    L + + GC+A+   EEIL R  +V+++ GP  Y  LP+LL  A 
Sbjct: 162 HQLKSLKSKRLRSRVPLRIGILGCMAERLKEEILNREKMVDILAGPDAYRDLPQLLAVAE 221

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G++  +   S+++ +  +  V    +     +AF++I  GCD  C++C+VP+TRG E S
Sbjct: 222 SGQQAANVLLSLDETYADVMPVQTSPS---ATSAFVSIMRGCDNMCSYCIVPFTRGRERS 278

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWR---------------GKGLDGE------ 243
           R ++ +++E RKL + G+ E+TLLGQNVN++R                +G          
Sbjct: 279 RPVASILEEVRKLSEQGLKEVTLLGQNVNSFRDNSEVQFNNAVSTNLSRGFSTNYKAKQG 338

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
              F+ LL  +S I   +R+R+T+ HP+D  D +++   + D +   +HLP QSGS R+L
Sbjct: 339 GLRFAHLLDQVSRIDPEMRIRFTSPHPKDFPDEVLQLIRERDNICKQIHLPAQSGSSRVL 398

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           ++M R ++   Y ++I  IR   P +++SSDFI GF GET++D   T+ L+ ++ Y   F
Sbjct: 399 EAMRRGYSREAYVELIHHIRESIPGVSLSSDFIAGFCGETEEDHLQTVSLLREVQYNIGF 458

Query: 364 SFKYSPRLGTPGSNML-EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422
            F YS R  T   + L + + E VK  RL  L    RE+    N + VG    VL+E   
Sbjct: 459 LFAYSMRQKTRAYHRLKDDIPEEVKLRRLEELITVFREEATKANKSFVGCTQLVLVEGPS 518

Query: 423 KEKGK-LVGRSPWLQSVVLNSKN------------HNIGDIIKVRITDVKISTLYGELV 468
           K     L GR+     V+                    GD + V+IT     TL G ++
Sbjct: 519 KRSAADLCGRNDGNLKVIFADAEMEDATDSRLRVRAQPGDYVLVKITSASSQTLKGHVL 577


>gi|157164991|ref|YP_001467015.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Campylobacter concisus
           13826]
 gi|229890496|sp|A7ZE07|MIAB_CAMC1 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|112800061|gb|EAT97405.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Campylobacter concisus
           13826]
          Length = 433

 Score =  260 bits (665), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 157/448 (35%), Positives = 247/448 (55%), Gaps = 20/448 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRM-EDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ F+++ GC MNV DS  +  ++   + Y    ++++ADLI++NTC +REK   K++S 
Sbjct: 3   KKLFIQTLGCAMNVRDSEHIIAELSQKEDYSLTQNIEEADLILINTCSVREKPVHKLFSE 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G     K    K G      V GC A   G EI +R+P V+ V+G +   ++ + +   
Sbjct: 63  VGAFEKAKKRGAKIG------VCGCTASHLGSEIFKRAPYVDFVLGARNVSKITKAVNTP 116

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           +F    ++ D S E  F        G  R     + + I  GCDK CT+C+VP+TRG EI
Sbjct: 117 KFISTDINHDES-EYAF--------GEFRGSPYKSHINISIGCDKKCTYCIVPHTRGDEI 167

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG--EKCTFSDLLYSLSEIKGLV 261
           S   S ++ E  K   +G  EI LLGQNVN + GK   G  E   FSDLL  +SEI+G+ 
Sbjct: 168 SIPSSLILKEVEKAAKSGAKEIFLLGQNVNNY-GKRFSGVQENIDFSDLLVKISEIEGVE 226

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+T+ HP  M D  ++   +   +   +H+P+QSG+ ++L+ M R +T   +     R
Sbjct: 227 RIRFTSPHPLHMDDKFLEIFTNNPKICKSMHMPLQSGNTKVLREMKRGYTKEWFLDRALR 286

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R + PD++IS+D IV FPGE+D++F  TMD+++++ + Q FSFKYSPR  T  +  + Q
Sbjct: 287 LRKMCPDVSISTDIIVAFPGESDNEFEDTMDVLEQVRFEQIFSFKYSPRPLTKAATFINQ 346

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           +D+   +ERL  LQ +  E       A   +I +V  E+  +  G + GRS     V ++
Sbjct: 347 IDDKTASERLTRLQNRHSEILDEIVAAQKDKIFDVYFEEL-RANGGVAGRSFNNFLVQVD 405

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELVV 469
                +G   K +IT+ K   LYGEL +
Sbjct: 406 GSEELLGTTQKAKITNPKRMVLYGELQI 433


>gi|124002076|ref|ZP_01686930.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Microscilla marina ATCC
           23134]
 gi|123992542|gb|EAY31887.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Microscilla marina ATCC
           23134]
          Length = 493

 Score =  260 bits (665), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 159/467 (34%), Positives = 265/467 (56%), Gaps = 30/467 (6%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ +++SYGCQMN  DS  +  +    G++  + +D+AD+++LNTC IR+ A ++V +  
Sbjct: 34  RKLYIESYGCQMNFSDSEIVASIMSEHGFDTTSEVDNADVVLLNTCAIRDNAEQRVRN-- 91

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R+RNL + + K+ G ++V V GC+A+   + +L    +V++V GP +Y  LP+L+ +A 
Sbjct: 92  -RLRNLNHIKNKKPG-MVVGVLGCMAERLKKRLLEEEQMVDIVAGPDSYRDLPQLVLQAD 149

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G+  V+   S ++ +  ++ V    N   GVTAF++I  GCD  C+FCVVP+TRG E S
Sbjct: 150 EGQEAVNVFLSRDETYADIAPVRLNSN---GVTAFISIMRGCDNMCSFCVVPFTRGRERS 206

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNA--WRGK----GLDGEK-------------- 244
           R    VV EA+ L D G  E+TLLGQNV++  W        L GEK              
Sbjct: 207 RDPYSVVKEAQDLFDKGYREVTLLGQNVDSYLWSSNPDVISLLGEKKAVKKGADLTGVDI 266

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304
             F+ LL  ++ +   +R+R++TSHP+D+++ ++      + +  Y+HLPVQSG+ R+L 
Sbjct: 267 VDFAGLLEKVALVSPDLRIRFSTSHPKDITEDVLHTMAKYENICKYIHLPVQSGNSRVLD 326

Query: 305 SMNRRHTAYEYRQIIDRIRSVR-PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           +MNR +T   Y +I+  IR +   +  ISSD I GF  ETD++ + T+ L+ ++ Y  ++
Sbjct: 327 AMNRGYTRERYLEIVASIRRILGEECGISSDMIAGFCTETDEEHQDTLTLMKEVKYDFSY 386

Query: 364 SFKYSPRLGTPGSNMLE-QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422
            F YS R  T  +  +E  V   VK +RL  +    +E  +  N   +G++ +VL+E   
Sbjct: 387 MFYYSERPNTTAAKKMEDDVPLEVKKKRLQEIIALQQELSLKRNQQDIGKVHKVLVEGFS 446

Query: 423 KEKGK-LVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           K     L GR+   + V+   K++  GD + V + +   +TL G+ V
Sbjct: 447 KRSDDYLKGRNTANKMVIFPKKHYKKGDYVNVMVKECSAATLIGDPV 493


>gi|237752702|ref|ZP_04583182.1| 2-methylthioadenine synthetase [Helicobacter winghamensis ATCC
           BAA-430]
 gi|229376191|gb|EEO26282.1| 2-methylthioadenine synthetase [Helicobacter winghamensis ATCC
           BAA-430]
          Length = 438

 Score =  260 bits (664), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 153/458 (33%), Positives = 254/458 (55%), Gaps = 32/458 (6%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRM-EDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++ ++++ GC MN  DS  +  ++   + Y+   +  +ADLI++NTC +REK  +K++
Sbjct: 1   MAKKLYIETLGCAMNERDSAHIIAELEEKESYQLTENPQEADLILINTCSVREKPEKKLF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S +G+   +K       GD  + + GC A   G++IL+RS  V+ V+G +   ++ +++ 
Sbjct: 61  SEIGQYAKIKK------GDAKIGICGCTASHLGDKILKRSKAVDFVLGARNVSKISQIIH 114

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGY----NRKRGVTAFLTIQEGCDKFCTFCVVPY 197
           + R     VD DY            D  Y    N+   +   + I  GCDK CT+C+VP+
Sbjct: 115 QNRVA--WVDIDYD-----------DSTYVFSQNQHSALKGMINISIGCDKKCTYCIVPH 161

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG--EKCTFSDLLYSLS 255
           TRG EIS     ++ EAR+L ++G  EI LLGQNVN + G+   G      F+ LL  +S
Sbjct: 162 TRGNEISIPSDLILQEARRLAESGTKEILLLGQNVNNY-GRRFSGAHRAINFTQLLNEIS 220

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
           +I GL R+R+T+ HP  M D  I        +   +H+P+QSGS  IL+ M R ++   +
Sbjct: 221 QINGLERIRFTSPHPLHMDDEFILEFAQNPKICKAIHMPLQSGSSEILRKMKRGYSKEWF 280

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
              ++++R + P+++I +D IVGFP E++DDF  T+D+++K+ +   +SF YS R  T  
Sbjct: 281 LNRVEKMRHLIPELSIGTDIIVGFPTESEDDFLETLDVLEKVRFDTLYSFIYSSRPHTEA 340

Query: 376 SNMLEQ-----VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG 430
            + LE      +DE +  ERL+ L+ + +E     N   VG+I +VL+E +  +   L G
Sbjct: 341 HHWLEMEQVHLIDEEIAKERLMRLKDRHKEILTQDNAKQVGRIHKVLVESYDAQNLWLEG 400

Query: 431 RSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           RS   + V + +    +G +  VRIT+VK + L GEL 
Sbjct: 401 RSDTNKLVRIKAGRDLVGSLCNVRITEVKGAQLIGELA 438


>gi|163847968|ref|YP_001636012.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Chloroflexus
           aurantiacus J-10-fl]
 gi|222525848|ref|YP_002570319.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Chloroflexus
           sp. Y-400-fl]
 gi|229890474|sp|A9WHB1|MIAB_CHLAA RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|163669257|gb|ABY35623.1| RNA modification enzyme, MiaB family [Chloroflexus aurantiacus
           J-10-fl]
 gi|222449727|gb|ACM53993.1| RNA modification enzyme, MiaB family [Chloroflexus sp. Y-400-fl]
          Length = 466

 Score =  260 bits (664), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 165/456 (36%), Positives = 250/456 (54%), Gaps = 35/456 (7%)

Query: 19  DQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAE 78
           DQ    +R++V + GCQMN+ DS R+E      GY      +DA  IVLN+C +R  A E
Sbjct: 16  DQTPRERRYYVWTVGCQMNISDSERLEAALQGVGYSPATRPEDASFIVLNSCSVRASAEE 75

Query: 79  KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILR-RSPIVNVVVGPQTYYRLP 137
           ++   LG +  +K    ++  D  +V+ GC+       I   + P+V+  V P     + 
Sbjct: 76  RILGKLGELVRVK----RQHPDTRIVLWGCMVGPNNRSIFADQLPMVDHFVSPSAVDEVV 131

Query: 138 ELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197
            L           +  Y++++    L + D  +     V+  + IQ GC+  C++CV+P 
Sbjct: 132 AL---------APNPIYTLDEPA--LPVRDWSHP---PVSVHVPIQYGCNMTCSYCVIPL 177

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257
            RG E SR L+++V+E R+++  G  EITLLGQ V++W G  L G +   +DLL ++   
Sbjct: 178 RRGRERSRPLAEIVEEVRRIVARGAKEITLLGQIVDSW-GHDLPG-RPELADLLEAVDPT 235

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
            GL+RLR+ TSHP  M+D LI+    L    P ++LPVQ+GSDR+LK M R +T   Y+ 
Sbjct: 236 PGLLRLRFLTSHPAWMTDRLIETVARLPRCQPEINLPVQAGSDRVLKLMRRGYTVARYKT 295

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
           +I RIR+  PDI++++D IVG PGET+DDFR TMDL  +IG+ +     +S R   PG+ 
Sbjct: 296 LIARIRAAIPDISLTTDIIVGHPGETEDDFRQTMDLCAEIGFDKVHIAAFSAR---PGTR 352

Query: 378 MLEQ-------VDENVKAERLLCLQKKLREQQVSFNDA-CVGQIIEVLIEKHGKEKGKLV 429
             EQ       V   VK ER   L+ +L+EQ  +   A  +GQ +EVL+E  G+ KGK  
Sbjct: 353 AAEQEQDPALAVPPAVKEERRRRLE-QLQEQIATERMARFLGQTVEVLVE--GESKGKWR 409

Query: 430 GRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYG 465
           GR+P  + V  +      G ++ V+IT     +L G
Sbjct: 410 GRTPGNRLVFFSHPADLTGQLVPVKITATSPWSLQG 445


>gi|15639741|ref|NP_219191.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Treponema
           pallidum subsp. pallidum str. Nichols]
 gi|189025979|ref|YP_001933751.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Treponema
           pallidum subsp. pallidum SS14]
 gi|6136574|sp|O83735|MIAB_TREPA RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|229891019|sp|B2S3Z3|MIAB_TREPS RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|3323060|gb|AAC65721.1| conserved hypothetical protein [Treponema pallidum subsp. pallidum
           str. Nichols]
 gi|189018554|gb|ACD71172.1| hypothetical protein TPASS_0754 [Treponema pallidum subsp. pallidum
           SS14]
 gi|291060116|gb|ADD72851.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Treponema pallidum subsp.
           pallidum str. Chicago]
          Length = 456

 Score =  260 bits (664), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 153/470 (32%), Positives = 256/470 (54%), Gaps = 49/470 (10%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           +F ++YGCQMNV +S  +E +  ++G+ +       D++++NTC +R  A  +V+  LG 
Sbjct: 3   YFFETYGCQMNVAESASVEQLLLARGWTKAVDAQTCDVLIINTCSVRITAETRVFGRLGL 62

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
             +LK  R        +++ GC+AQ   ++I ++ P ++ VVG   + R   + +     
Sbjct: 63  FSSLKKKRA-----FFIILMGCMAQRLHDKIQQQFPRIDYVVGTFAHARFESIFQEIE-- 115

Query: 147 KRVVDTDYSVEDKFERL-------------SIVDGGYNRKRGVTAFLTIQEGCDKFCTFC 193
           +++   DY  E   ER              S  +G +       +F+ I  GC+ FC+FC
Sbjct: 116 QKLTQKDYRFEFISERYREHPVSGYRFFASSYSEGSFQ------SFIPIMNGCNNFCSFC 169

Query: 194 VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS 253
           +VPY RG EISR L  ++ E   L + GV EITLLGQNVN++RG+  +G   TF  LL  
Sbjct: 170 IVPYVRGREISRDLDAILQEVDVLSEKGVREITLLGQNVNSYRGRDREGNIVTFPQLLRH 229

Query: 254 L---SEIKGLVR-LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
           L    E+K  ++ +R+ +SHP+D+SD LI        L   +HLPVQ G++ +LK M R 
Sbjct: 230 LVRRCEVKDQIKWIRFVSSHPKDLSDDLIATIAQESRLCRLVHLPVQHGANGVLKRMRRS 289

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369
           +T  +Y  ++ ++++  P++A+S+D ++GFPGET++DF  T+DL+ ++ +  AF + Y+P
Sbjct: 290 YTREQYLSLVGKLKASVPNVALSTDILIGFPGETEEDFEQTLDLMREVEFDSAFMYHYNP 349

Query: 370 RLGTPGSNMLEQVDENVKAERL---LCLQ-----KKLREQQVSFNDACVGQIIEVLIEKH 421
           R GTP  +  +++ +  +  RL   + LQ     KK+R        A VG+ + VL+E  
Sbjct: 350 REGTPAYDFPDRIPDATRIARLQRVIALQMSTTLKKMR--------ARVGKTLPVLVESR 401

Query: 422 GKEKG-KLVGRSPWLQSVVLNSK--NHNIGDIIKVRITDVKISTLYGELV 468
            +    +L G +   +  VL  K     IG  + V++ +V+  TL   LV
Sbjct: 402 SRNNPEELFGHTELGEMTVLEGKVDPTYIGRFVDVQVKEVRGRTLRAHLV 451


>gi|224436855|ref|ZP_03657844.1| hypothetical protein HcinC1_02771 [Helicobacter cinaedi CCUG 18818]
          Length = 452

 Score =  259 bits (663), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 158/451 (35%), Positives = 254/451 (56%), Gaps = 25/451 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRM-EDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + F+++ GC MN  DS  +  ++   + Y   ++  +ADLI++NTC +REK  +K++S +
Sbjct: 2   KLFIQTLGCAMNERDSAHIIAELKEKKQYTLTDNAKEADLILINTCSVREKPEKKLFSEI 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           G+    K S  K G      + GC A   GEEI++++P V+ V+G +   ++ ++L+R +
Sbjct: 62  GQFAKEKKSGAKIG------ICGCTASHLGEEIIKKAPSVDFVLGARNVSKITQVLDRPK 115

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
                V+ D   +D     S      ++  G+ A L I  GCDK C++C+VP+TRG EIS
Sbjct: 116 ----AVEVDIDYDD-----STYVFASSQDMGIKAHLNISIGCDKKCSYCIVPFTRGKEIS 166

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-GLDGEKCTFSDLLYSLSEIKGLVRL 263
             +  +V+EA+KL+ NG  E+ LLGQNVN +  +     +K  F++LL +LSEI+GL R+
Sbjct: 167 IPIDLLVNEAKKLVANGAKELLLLGQNVNHYGVRFSTPHKKTNFTELLATLSEIEGLYRI 226

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+T+ HP  M D  ++       +   +H+P+QSGS +ILK M R +    Y   I +++
Sbjct: 227 RFTSPHPLHMDDEFLEEFARNPKIAKGIHIPLQSGSSQILKMMRRGYDKQWYLDRIAKLK 286

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG----SNML 379
           S+ P++ I +D IVGFP E++ DF  TM+++  + +   +SF YSPR  T       +ML
Sbjct: 287 SLLPNVGIGTDIIVGFPTESEQDFEDTMEVLSIVEFDTLYSFVYSPRPHTSAYSYDKSML 346

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV--GRSPWLQS 437
             V + V  ERL  LQ   ++         +G I EVLIE H  ++G+    GRS   + 
Sbjct: 347 --VPQEVAKERLSRLQNLHKQILQKKAQKEIGSIYEVLIENHRDDEGQTWSEGRSSQNKL 404

Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           + +  +   IG II+V++T      LYGE V
Sbjct: 405 IKILGRKCPIGSIIQVKVTHNDGGGLYGEFV 435


>gi|301167860|emb|CBW27445.1| putative radical SAM protein [Bacteriovorax marinus SJ]
          Length = 492

 Score =  259 bits (663), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 154/417 (36%), Positives = 250/417 (59%), Gaps = 24/417 (5%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P++ ++K+YGCQMN +D+ R+     S  + +   ++DADL++ NTC +R+ A  K YS 
Sbjct: 42  PRKVWMKTYGCQMNYHDTDRIMSHLKSLNFTQTEEVEDADLVLFNTCAVRDLANNKFYSH 101

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LG   NLK+ +  +  +L+V V GCVAQ EG+E++++   ++   GP T   + +++ R 
Sbjct: 102 LG---NLKHQKAIKKDNLVVGVGGCVAQTEGKELIKKYRHLDFAFGPDTIDSINDMVYRT 158

Query: 144 RFGKRVVDTDYSVE--DKFERLSI---VDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
             G    D+ + +   D+ E  SI   +  G  +     AF+ I +GC+K+CT+C+VPYT
Sbjct: 159 YAG----DSKFFINSWDRSENFSIETKISHGTPQ-----AFVNIIKGCNKYCTYCIVPYT 209

Query: 199 RGIEISRSLSQVVDEARKLID-NGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257
           RG E SR +++VV++ R+L+   G+ E+TLLGQNVN++ GK  +GE  + + L+  L  +
Sbjct: 210 RGKERSRKVAEVVEDIRRLVKYQGIQEVTLLGQNVNSY-GKE-NGE--SLAQLILELENL 265

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
           +GL  +RYTTSHP D+SD LI  HG    L  +LHLP+QSGS+ +LK MNR +T   Y  
Sbjct: 266 EGLEIIRYTTSHPYDISDELIMTHGVSKKLSKHLHLPIQSGSNTVLKRMNREYTVEHYLD 325

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
            ++++R V+P+I IS+D I GF  ET+++  AT+ L+D   +   +S+ YS R  T  + 
Sbjct: 326 RVNKLREVQPEIIISTDIIAGFVNETNEEHEATLKLLDDARFDFIYSYAYSKRNKTRAAR 385

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG--KLVGRS 432
           M + + ++++  RL  +Q    + Q        G+   +L+E     KG  K  GR+
Sbjct: 386 MEDHLTDDIRGARLREIQAHQLKLQAEIRKEMEGKSFRILVEGKNTFKGETKWKGRT 442


>gi|34558083|ref|NP_907898.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Wolinella
           succinogenes DSM 1740]
 gi|81653788|sp|Q7MR25|MIAB_WOLSU RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|34483801|emb|CAE10798.1| conserved hypothetical protein-2-methylthioadenine synthetase
           [Wolinella succinogenes]
          Length = 433

 Score =  259 bits (663), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 153/444 (34%), Positives = 243/444 (54%), Gaps = 17/444 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRM-EDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ F+++ GC MNV DS  M  ++   +GY   +   +ADLI++NTC +REK   K++S 
Sbjct: 3   KKLFIQTLGCAMNVRDSEHMIAELEAKEGYTLTDDPKEADLILINTCSVREKPERKLFSE 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G+    K    K G      V GC A   G EIL+++P V+ V+G +   ++  ++ + 
Sbjct: 63  IGQFSKEKKEEAKIG------VCGCTASHLGSEILKKAPSVSFVLGARNVSKISRVIHQE 116

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           +  +   D D S            G  N  +   A + I  GCDK C +C+VP+TRG EI
Sbjct: 117 KAVEVATDYDDS------SYVFATGSRNDYK---AMVNISIGCDKKCAYCIVPHTRGQEI 167

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-RGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           S     ++ EAR+L   GV EI LLGQNVN + R       K +F++LL  LS+++G+ R
Sbjct: 168 SVPSDLILGEARRLASAGVKEILLLGQNVNHYGRRFSSAHPKISFTELLRELSQVEGIER 227

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LR+T+ HP  M D  ++       +   +H+P+QSGS RIL  M R ++   +   ++R+
Sbjct: 228 LRFTSPHPLHMDDEFLEEFASNPKICKSIHMPLQSGSTRILSLMRRGYSQEWFINRVERL 287

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           +++ P+  I +D IVGFPGE+++DF  TM++++++ +   +SF YSPR  T  ++    V
Sbjct: 288 KALAPETTIGTDIIVGFPGESEEDFLGTMEVLERVRFETLYSFVYSPRPHTEAASWENLV 347

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
           DE V +ERL  LQ + +E     N   VG I  VL E   +++G   GR+   + V +  
Sbjct: 348 DEEVASERLHRLQARHKEILEELNQKEVGAIHSVLWEHQRRDEGWCEGRTDTGKMVRMKG 407

Query: 443 KNHNIGDIIKVRITDVKISTLYGE 466
               +G I  VRI +   + L GE
Sbjct: 408 GEEFLGRITPVRIKEAYRAFLIGE 431


>gi|154175326|ref|YP_001408583.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Campylobacter
           curvus 525.92]
 gi|153793216|gb|EAU01325.2| tRNA-I(6)A37 thiotransferase enzyme MiaB [Campylobacter curvus
           525.92]
          Length = 420

 Score =  259 bits (662), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 157/436 (36%), Positives = 240/436 (55%), Gaps = 20/436 (4%)

Query: 36  MNVYDSLRM-EDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSR 94
           MNV DS  +  ++   + Y    ++++ADLI++NTC +REK   K++S +G     K + 
Sbjct: 1   MNVRDSEHIIAELSQKEDYTLTQNLEEADLILINTCSVREKPVHKLFSEVGAFEKAKKNG 60

Query: 95  IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDY 154
            K G      V GC A   G+EI +R+P V+ V+G +   ++   ++  +F    ++ D 
Sbjct: 61  AKIG------VCGCTASHLGDEIFKRAPYVDFVLGARNVSKISTAVKTPKFISTDINHDE 114

Query: 155 SVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEA 214
           S E  F        G  R     + + I  GCDK CT+C+VP+TRG EIS   + ++ E 
Sbjct: 115 S-EYAF--------GEFRGSPYKSHINISIGCDKKCTYCIVPHTRGDEISIPANLILREV 165

Query: 215 RKLIDNGVCEITLLGQNVNAWRGKGLDG--EKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
            K   NG  EI LLGQNVN + GK   G  EK  FSDLL  +SE+ G+ R+R+T+ HP  
Sbjct: 166 EKAATNGAKEIFLLGQNVNNY-GKRFSGAHEKIDFSDLLVRISEVAGVERIRFTSPHPLH 224

Query: 273 MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAIS 332
           M D  ++       +   +H+P+QSG+ ++L+ M R +T   +     ++R + PD++IS
Sbjct: 225 MDDKFLEIFSQNPKICKSMHMPLQSGNTKVLREMKRGYTKEWFLDRAAKLREMCPDVSIS 284

Query: 333 SDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLL 392
           +D IV FPGE+D +F  TMD+++++ + Q FSFKYSPR  T  +    Q+DE   + RL 
Sbjct: 285 TDIIVAFPGESDAEFEDTMDVLERVKFEQIFSFKYSPRPMTKAAEFTNQIDEATASARLT 344

Query: 393 CLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIK 452
            LQ +  E       A  G+I++V  E+  +  G + GRS     V +N     +G  +K
Sbjct: 345 RLQSRHNEILDEIVAAQEGKILDVYFEEL-RANGGVAGRSFNNFLVQVNGSEELLGRTLK 403

Query: 453 VRITDVKISTLYGELV 468
           V+ITD K   LYGEL 
Sbjct: 404 VKITDTKRMVLYGELA 419


>gi|152991225|ref|YP_001356947.1| tRNA-i(6)A37 thiotransferase enzyme [Nitratiruptor sp. SB155-2]
 gi|229890577|sp|A6Q531|MIAB_NITSB RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|151423086|dbj|BAF70590.1| tRNA-i(6)A37 thiotransferase enzyme [Nitratiruptor sp. SB155-2]
          Length = 433

 Score =  259 bits (662), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 158/446 (35%), Positives = 248/446 (55%), Gaps = 18/446 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRM-EDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           +R ++++ GC MNV DS  +  ++   + YE   ++ +ADLI++NTC +REK   K++S 
Sbjct: 3   KRLYIETLGCAMNVRDSEHIIAELTQKEDYELTQNLQEADLILINTCSVREKPVHKLFSE 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G      N + KEG    + V GC A   GEEI++++P V+ V+G +   ++ +++++ 
Sbjct: 63  IGYF----NKKKKEGAK--IGVCGCTASHLGEEIIKKAPYVSFVLGARNVSKIRDVIKQE 116

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           +  +  VD DY  E  +         Y       AF+ I  GCDK CTFC+VP TRG EI
Sbjct: 117 KAVE--VDIDYD-ESTYAFSDFRTSPYK------AFINISIGCDKKCTFCIVPNTRGEEI 167

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-RGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           S     ++ E R+ +D G  EI LLGQNVN + R       K  F+DLL  +SEI G+ R
Sbjct: 168 SIPPELILQEVRRAVDTGAKEIFLLGQNVNNYGRSFSDKARKVDFTDLLRMVSEIDGVRR 227

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+T+ HP  M D  ++       +   +H+P+QSGS ++L+ M R +T   +     ++
Sbjct: 228 IRFTSPHPLHMDDKFLQEFATNPKICKSMHMPLQSGSTKVLRDMKRGYTKEWFLDRAMKL 287

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R + P++ IS+D IVGFPGE+++DF  T+D+V K+ + Q FSFKYSPR  TP  +   Q+
Sbjct: 288 REMVPEVHISTDIIVGFPGESEEDFADTIDVVQKVRFEQIFSFKYSPRPLTPAKDYENQI 347

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
            + V + RL  LQ    +   S ++    ++ EV  E+  K  G + GR+     V +  
Sbjct: 348 PDEVASRRLSYLQDLHLQMLDSISEQEKDKVYEVYFEEL-KPGGYVAGRTDNNWIVKVKG 406

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
               +G+   VRIT     +L GELV
Sbjct: 407 SEELLGEFKSVRITKPGRLSLEGELV 432


>gi|57168594|ref|ZP_00367727.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Campylobacter coli
           RM2228]
 gi|57020099|gb|EAL56776.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Campylobacter coli
           RM2228]
          Length = 419

 Score =  259 bits (662), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 161/436 (36%), Positives = 238/436 (54%), Gaps = 20/436 (4%)

Query: 36  MNVYDSLRM-EDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSR 94
           MNV DS  M  ++     Y     + +ADLI++NTC +REK   K++S +G    +K S 
Sbjct: 1   MNVRDSEHMIAELTQKDNYTLTEDIKEADLILINTCSVREKPVHKLFSEVGGFEKVKKSG 60

Query: 95  IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDY 154
            K G      V GC A   G EI RR+P V+ V+G +   ++ + +   +F    VD DY
Sbjct: 61  AKIG------VCGCTASHLGSEIFRRAPYVDFVLGARNISKITQAVNTPKFMS--VDIDY 112

Query: 155 SVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEA 214
             E +F        G  R     +++ I  GCDK CT+C+VP+TRG EIS  L+ +  EA
Sbjct: 113 D-ESEFA------FGDFRNSIYKSYINISIGCDKHCTYCIVPHTRGDEISIPLNIIYKEA 165

Query: 215 RKLIDNGVCEITLLGQNVNAWRGKGLDGE--KCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
           +K +D G  EI LLGQNVN + GK    E  K  FSDLL  LS I+GL R+R+T+ HP  
Sbjct: 166 QKAVDKGAKEIFLLGQNVNNY-GKRFRNEHKKMDFSDLLEELSTIEGLERIRFTSPHPLH 224

Query: 273 MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAIS 332
           M D  ++       +   +H+P+QSGS +ILK+M R +T   Y     ++R + P+++IS
Sbjct: 225 MDDKFLEVFAKNPKVCKSMHMPLQSGSSQILKAMKRGYTKEWYLDRALKLRELCPNVSIS 284

Query: 333 SDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLL 392
           +D IV FPGE+D DF  TM++++K+ + Q FSFKYS R  T  + M  Q+DE + + RL 
Sbjct: 285 TDIIVAFPGESDKDFEETMEVLEKVRFEQMFSFKYSKRPLTKAATMPNQIDEEIASNRLS 344

Query: 393 CLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIK 452
            LQ +  E           +  +VL E+  +    + GR+     V +      +G   +
Sbjct: 345 TLQARHNEILDDIVKKQENKTFKVLFEEL-RAGNAIAGRTDNNFLVQVEGSEELLGTFKE 403

Query: 453 VRITDVKISTLYGELV 468
           V+IT+ K   LYGE++
Sbjct: 404 VKITNAKRMVLYGEII 419


>gi|194334797|ref|YP_002016657.1| (dimethylallyl)adenosine tRNA methylthiotransferase
           [Prosthecochloris aestuarii DSM 271]
 gi|229890596|sp|B4S564|MIAB_PROA2 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|194312615|gb|ACF47010.1| RNA modification enzyme, MiaB family [Prosthecochloris aestuarii
           DSM 271]
          Length = 441

 Score =  259 bits (662), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 160/449 (35%), Positives = 255/449 (56%), Gaps = 22/449 (4%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + ++  ++++GCQMN  D+  +  +  ++GY  V   DDADL++LNTC +RE A EK+  
Sbjct: 1   MTKKVSIRTFGCQMNQADTEIISSLLTAEGYCLVAEEDDADLVMLNTCAVRENAVEKIMH 60

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            L  ++ L+  R      ++    GCV Q   EE+ ++S +++ + GP +Y +LP L+  
Sbjct: 61  HLDSLKGLRRRRRGLVVGVI----GCVPQYYREEMFQKSGVIDFIAGPDSYRKLPGLIRN 116

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           A  G R  +   +  + +  +  +  G      ++AF+ +  GC+  C FCVVP+TRG E
Sbjct: 117 AFQGIRGAELFLTQSETYGDIEPMRSG-----SISAFIPVMRGCNNMCAFCVVPFTRGRE 171

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SRSL  V+DE R+L   G  E+TLLGQNVN++R    D     F+ LL  +S+  G +R
Sbjct: 172 RSRSLQSVLDEVRRLEGQGYRELTLLGQNVNSYRD---DEAGADFALLLDEVSKAAGEMR 228

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP+D+S+ L+      + +   +HLPVQSGS R+L+ M+R HT  EY   I  I
Sbjct: 229 VRFTTSHPKDISEDLVNVVAQRENVCNAIHLPVQSGSSRMLEVMHRGHTRREYLDKIAMI 288

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           RS  P +A+S+D I GF GET++D   T+ L++++ +  A+ F YS R GT  +  L   
Sbjct: 289 RSAVPGVALSTDLIAGFCGETEEDHLQTLSLMEEVRFDYAYMFYYSVRPGTYAARHL--T 346

Query: 383 DENVKAERLLCLQKKLREQ-----QVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQ 436
           D+    E+   LQ+ +  Q     ++  ND  VG + EVL E   +     L+GRS   +
Sbjct: 347 DDVALEEKKRRLQEIIDLQSGISGEIFGND--VGSVQEVLAESESRRSSDMLMGRSDTNR 404

Query: 437 SVVLNSKNHNIGDIIKVRITDVKISTLYG 465
            VV + +++  GD+++V I     +TL G
Sbjct: 405 VVVFDRQHYQPGDLVRVVIESSTQATLIG 433


>gi|153842125|ref|ZP_01993473.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Vibrio parahaemolyticus
           AQ3810]
 gi|149745410|gb|EDM56661.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Vibrio parahaemolyticus
           AQ3810]
          Length = 305

 Score =  259 bits (662), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 125/249 (50%), Positives = 170/249 (68%)

Query: 176 VTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW 235
            TAF++I EGC K+CT+CVVPYTRG E+SR +  V+ E  +L + GV E+ LLGQNVNA+
Sbjct: 1   ATAFVSIMEGCSKYCTYCVVPYTRGEEVSRPMDDVLFEIAQLAEQGVREVNLLGQNVNAY 60

Query: 236 RGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPV 295
           RG   DGE C+F++LL  ++ I G+ R+R+TTSHP + +D +I  + D   L+ +LHLPV
Sbjct: 61  RGPMHDGEICSFAELLRLVASIDGIDRIRFTTSHPLEFTDDIIAVYEDTPELVSFLHLPV 120

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
           QSGSDRIL  M R HTA EY+ II ++R  RPDI ISSDFIVGFPGETD DF+ TM L+ 
Sbjct: 121 QSGSDRILTMMKRPHTAIEYKSIIRKLRKARPDIQISSDFIVGFPGETDKDFQDTMKLIK 180

Query: 356 KIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIE 415
            + +  +FSF +SPR GTP ++    + E VK ERL  LQ+ +  Q + ++   +     
Sbjct: 181 DVDFDMSFSFIFSPRPGTPAADYPCDIPEQVKKERLYELQQTINAQAMRYSRLMLATEQR 240

Query: 416 VLIEKHGKE 424
           VL+E   K+
Sbjct: 241 VLVEGPSKK 249


>gi|256371457|ref|YP_003109281.1| RNA modification enzyme, MiaB family [Acidimicrobium ferrooxidans
           DSM 10331]
 gi|256008041|gb|ACU53608.1| RNA modification enzyme, MiaB family [Acidimicrobium ferrooxidans
           DSM 10331]
          Length = 487

 Score =  259 bits (661), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 162/491 (32%), Positives = 254/491 (51%), Gaps = 61/491 (12%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           +P  + V+++GCQMN +DS R+  +    G  R +   DA ++V NTC IR  A E+   
Sbjct: 1   MPSSYVVRTFGCQMNEHDSERIAGVLEGLGLTRGDDPADASVVVFNTCTIRANADER--- 57

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
           F G++  L+ +R +    + +VVAGC+AQ EG  +L R+P V+V+VG     RL ELL  
Sbjct: 58  FFGQVNQLREAR-RRNPSMRIVVAGCLAQGEGAGLLERAPHVDVIVGTHQVGRLAELLGA 116

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVD----GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
           A   + VVD     E +   + + D    G    +    A++TIQ GCD  C FC+VP  
Sbjct: 117 ADGAEAVVDVR---EPEPGSVGLDDPTPWGEAVSEEPWRAWVTIQVGCDNRCAFCIVPRV 173

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVN------------------------- 233
           RG E SR    +V E R+L   GV E+TLLGQNVN                         
Sbjct: 174 RGPEASRPFDAIVAEVRELAARGVSEVTLLGQNVNSYGRDLVLAMRRAEDERERAQVASR 233

Query: 234 ---AWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY 290
              A+ G+G+   +  F+DL+ ++  + G+ R+R+T+ HP+DM     +A  +   +   
Sbjct: 234 SGVAFLGQGVPRVRPLFADLVRAVGAVPGIRRVRFTSPHPKDMRTETFQAMAETPTVCES 293

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
           LH P+QSGSDRIL +M+R ++A  +   +   R+   D+A+S+D IVGFPGETD DF AT
Sbjct: 294 LHFPLQSGSDRILAAMHRGYSADRFLAKLAEARATIDDLAVSTDIIVGFPGETDADFEAT 353

Query: 351 MDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ-VDENVKAERLLCLQKKLREQQVSFNDAC 409
           +++  +  +  A++F YSPR GT  + ++++ VD +V  ER   L +       + + A 
Sbjct: 354 LEVAAEAAFDLAYTFIYSPRPGTEAAALVDRFVDPDVVHERFDRLVRVTERSAAAAHRAR 413

Query: 410 VGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNI------------GDIIKVRITD 457
           VG+  E+LIE   ++  +         +    ++ H +            G   + RI D
Sbjct: 414 VGRDEEILIEGPSRKDPR---------TATARTRQHKLVHIPGLDARALGGRYGRARIVD 464

Query: 458 VKISTLYGELV 468
            +   L GE++
Sbjct: 465 ARAHYLIGEII 475


>gi|307942734|ref|ZP_07658079.1| protein YleA [Roseibium sp. TrichSKD4]
 gi|307773530|gb|EFO32746.1| protein YleA [Roseibium sp. TrichSKD4]
          Length = 252

 Score =  259 bits (661), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 115/193 (59%), Positives = 159/193 (82%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ FV++YGCQMNVYDS RM D+   +GYE  ++++DADL++LNTCHIREKAAEKVYS L
Sbjct: 46  RKVFVRTYGCQMNVYDSERMSDVLAREGYEPTDTVEDADLVLLNTCHIREKAAEKVYSEL 105

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GRIR +K+ R K G + ++ VAGCVAQAEG EI RR+P+V++VVGPQ+Y++LP+LL++A+
Sbjct: 106 GRIRKVKDERAKSGKETVIGVAGCVAQAEGAEISRRAPVVDLVVGPQSYHQLPDLLKKAK 165

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G++VV+T++ ++ KF+ LS       RKR  +AFLT+QEGCDKFCTFCVVPYTRG E+S
Sbjct: 166 GGEKVVETEFDIDAKFDHLSAKAKQPVRKRAPSAFLTVQEGCDKFCTFCVVPYTRGAEVS 225

Query: 205 RSLSQVVDEARKL 217
           RS+ Q+V+EA ++
Sbjct: 226 RSVDQIVEEAERM 238


>gi|73992243|ref|XP_534385.2| PREDICTED: similar to CDK5 regulatory subunit associated protein 1
           isoform a [Canis familiaris]
          Length = 583

 Score =  258 bits (660), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 157/479 (32%), Positives = 260/479 (54%), Gaps = 38/479 (7%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ ++++YGCQMNV D+     +    GY R  ++ +AD+I+L TC IREKA + +++ L
Sbjct: 96  RKVYLETYGCQMNVNDTEIAWSVLQKSGYLRTRNLQEADVILLVTCSIREKAEQTIWNRL 155

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            +++ LK  R++    L + + GC+A+   EEIL R  +V+++ GP  Y  LP LL  A 
Sbjct: 156 QQLKALKTKRLRSRVPLRIGILGCMAERLKEEILNREKMVDILAGPDAYRDLPRLLAVAE 215

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G++  +   S+++ +  +  V    +     +AF++I  GCD  C++C+VP+TRG E S
Sbjct: 216 SGQQAANVLLSLDETYADVMPVQTSPS---ATSAFVSIMRGCDNMCSYCIVPFTRGRERS 272

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWR---------------GKGLDGE------ 243
           R ++ +++E RKL + G+ E+TLLGQNVN+++                +G          
Sbjct: 273 RPVASILEEVRKLSEQGLKEVTLLGQNVNSFQDSSEVQFNNAVSTNLSRGFSTNYKPKKG 332

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
              F+ LL  +S +   +R+R+T+ HP+D  D +++   + D +   +HLP QSGS R+L
Sbjct: 333 GLRFTYLLDQVSRVDPEMRIRFTSPHPKDFPDEVLQLIHERDNICKQIHLPAQSGSSRVL 392

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           ++M R ++   Y ++I  IR   P +++SSDFI GF GET++D   T+ L+ ++ Y   F
Sbjct: 393 EAMRRGYSREAYVELIHHIRESIPGVSLSSDFIAGFCGETEEDHLQTVSLLREVQYNMGF 452

Query: 364 SFKYSPRLGTPGSNML-EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422
            F YS R  T   + L + V E VK  RL  L    RE+    N A VG    VL+E   
Sbjct: 453 LFAYSMRQKTRAYHRLKDDVPEEVKLRRLEELITVFREEATKANMASVGSTQLVLVEGVS 512

Query: 423 KEKGK-LVGRS--------PWLQSVVLNSKNHNI----GDIIKVRITDVKISTLYGELV 468
           K     L GR+        P ++   +N+ +  +    GD + V+IT     TL G ++
Sbjct: 513 KRSATDLCGRNDGNLKVIFPDVEMEDINNSDVRVRAQPGDYVLVKITSTSSQTLKGHVL 571


>gi|320094018|ref|ZP_08025843.1| tRNA-I(6)A37 thiotransferase [Actinomyces sp. oral taxon 178 str.
           F0338]
 gi|319979062|gb|EFW10580.1| tRNA-I(6)A37 thiotransferase [Actinomyces sp. oral taxon 178 str.
           F0338]
          Length = 508

 Score =  258 bits (659), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 159/460 (34%), Positives = 258/460 (56%), Gaps = 41/460 (8%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDA------------DLIVLNTCH 71
           P+ + V++ GCQMN +DS RM  +    G   V+ + +A            D++V+NTC 
Sbjct: 10  PRTYAVRTLGCQMNEHDSERMAGLLEQAGLLPVDQVPEAAARATDAGDMGADVVVINTCS 69

Query: 72  IREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ 131
           +RE AA +++  LG++  +K  R      + + V GC+AQ   E I+ R+P V+ V G  
Sbjct: 70  VRENAATRLFGNLGQLAAVKRGRPG----MQIAVGGCLAQQMREGIVERAPWVDAVFGTH 125

Query: 132 TYYRLPELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190
               LP LL RA   +   V+ + S++     L        R+    A+++I  GC+  C
Sbjct: 126 NIDVLPALLRRAEHNRAAAVEIEESLKVFPSTLPT-----RRESVYAAWVSISVGCNNTC 180

Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDL 250
           TFC+VP  RG E  R   +++ E   +   G  E+TLLGQNVN++ G G  GE+  F+DL
Sbjct: 181 TFCIVPRLRGKERDRRPGEILAEVEAVASQGAIEVTLLGQNVNSY-GVGF-GERRAFADL 238

Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
           L ++  ++G+ R+R+T+ HP   +D +I A      +MP LH+P+QSGSDR+L+ M R +
Sbjct: 239 LRAVGGVEGIERVRFTSPHPAAFTDDVIDAMATTPTVMPSLHMPLQSGSDRVLRQMRRSY 298

Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370
               +  I++R+R+  P  AI++D IVGFPGET++DF  T+ +V++  +A AF+F YSPR
Sbjct: 299 RRERFMGILERVRAAVPAAAITTDIIVGFPGETEEDFAQTLQVVEEARFASAFTFLYSPR 358

Query: 371 LGTPGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKG 426
            GTP ++  +QV  +V  E   RL+ LQ+++  +    N A VG  +EVL+ E  G++ G
Sbjct: 359 PGTPAADREDQVPADVALERYKRLVALQERICAED---NAALVGNGVEVLVSEGDGRKDG 415

Query: 427 ---KLVGRSP-------WLQSVVLNSKNHNIGDIIKVRIT 456
              ++ GR+         L + +  +     GD+++  +T
Sbjct: 416 ATRRITGRARDNRLVHVGLPASLSGADRPRPGDMVRASVT 455


>gi|30690642|ref|NP_195357.2| radical SAM domain-containing protein / TRAM domain-containing
           protein [Arabidopsis thaliana]
 gi|32129440|sp|Q8H0V1|CK5P1_ARATH RecName: Full=CDK5RAP1-like protein
 gi|25083016|gb|AAN72033.1| putative protein [Arabidopsis thaliana]
 gi|30725464|gb|AAP37754.1| At4g36390 [Arabidopsis thaliana]
 gi|332661250|gb|AEE86650.1| Methylthiotransferase [Arabidopsis thaliana]
          Length = 640

 Score =  258 bits (659), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 171/492 (34%), Positives = 257/492 (52%), Gaps = 51/492 (10%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGY-ERVNSMDDADLIVLNTCHIREKAAEKVYS-- 82
           R + ++YGCQMN+ D   +  +  + GY E V   + A++I +NTC IRE A ++V+   
Sbjct: 130 RIYHETYGCQMNINDMEIVLAIMKNSGYKEVVTDPESAEVIFVNTCAIRENAEQRVWQRL 189

Query: 83  ----FLGRIR--NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL 136
               FL R    N    R K      VVV GC+A+   ++IL    +V+VV GP  Y  L
Sbjct: 190 NYFWFLKREWKVNAATGRAKSLKPPKVVVLGCMAERLKDKILDSDKMVDVVCGPDAYRDL 249

Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
           P LLE   +G++ ++T  S+E+ +  +S V    N    +TAF+++  GC+  C FC+VP
Sbjct: 250 PRLLEEVDYGQKGINTLLSLEETYADISPVRISEN---SITAFVSVMRGCNNMCAFCIVP 306

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE------------- 243
           +TRG E SR +  ++ E  +L ++GV E+TLLGQNVN++     D E             
Sbjct: 307 FTRGRERSRPVESIIREVGELWESGVKEVTLLGQNVNSYNDDSADRESGANWEYSEGFSS 366

Query: 244 KCT-------FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQ 296
           +C        F+DLL  LS     +R R+T+ HP+D  D L+    D   +   +HLP Q
Sbjct: 367 RCKVKNMGLRFADLLDRLSVEFPEMRFRFTSPHPKDYPDELLYLMRDRHNICNLIHLPAQ 426

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
           SG+ RIL+ M R +T   Y  ++ +IRS+ PD+AI+SDFI GF GET+++ + T+ LV  
Sbjct: 427 SGNSRILEQMRRGYTREAYLDLVKKIRSIIPDVAITSDFITGFCGETEEEHQETLSLVRA 486

Query: 357 IGYAQAFSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIE 415
           +GY  A+ F YS R  T    N  + V E VK  RL  L    RE      D+ VG    
Sbjct: 487 VGYDMAYMFAYSMREKTHAHRNYTDDVPEEVKQRRLTELIDAFRETTGPCYDSQVGSTQL 546

Query: 416 VLIEKHGKE--KGKLVGRS-----------PWLQSVVL-----NSKNHNIGDIIKVRITD 457
           VL+E   K   + +L+G++           P      L       +N  IGD ++V+I  
Sbjct: 547 VLVEGPNKRAPETELIGKTDKGHRVSFVTKPLFDKACLLDGDDLKRNPGIGDFVEVQIEK 606

Query: 458 VKISTLYGELVV 469
              ++L+GE + 
Sbjct: 607 STRASLFGEALA 618


>gi|297798268|ref|XP_002867018.1| radical SAM domain-containing protein [Arabidopsis lyrata subsp.
           lyrata]
 gi|297312854|gb|EFH43277.1| radical SAM domain-containing protein [Arabidopsis lyrata subsp.
           lyrata]
          Length = 636

 Score =  258 bits (659), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 169/492 (34%), Positives = 260/492 (52%), Gaps = 51/492 (10%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGY-ERVNSMDDADLIVLNTCHIREKAAEKVYS-- 82
           R + ++YGCQMN+ D   +  +  + GY E V   + A++I +NTC IR+ A ++V+   
Sbjct: 127 RIYHETYGCQMNINDMEIVLSIMKNSGYKEVVTDPESAEVIFINTCAIRDNAEQRVWQRL 186

Query: 83  ----FLGRIR--NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL 136
               FL R    N+   R +      VVV GC+A+   ++IL    +V+VV GP  Y  L
Sbjct: 187 NYFWFLKREWKVNVAKGRAQSLKPPKVVVLGCMAERLKDKILDSDKMVDVVCGPDAYRDL 246

Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
           P LLE   +G++ ++T  S+E+ +  +S V    N    +TAF+++  GC+  C FC+VP
Sbjct: 247 PRLLEEVDYGQKGINTLLSLEETYADISPVRISEN---SITAFVSVMRGCNNMCAFCIVP 303

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE------------- 243
           +TRG E SR +  ++ E  +L ++GV E+TLLGQNVN++     D E             
Sbjct: 304 FTRGRERSRPVESIIREVGELWESGVKEVTLLGQNVNSYNDDSSDPESGANWEYSEGFSS 363

Query: 244 KCT-------FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQ 296
           +C        F+DLL  LS     +R R+T+ HP+D  D L+    D   +   +HLP Q
Sbjct: 364 RCKVKNMGLRFADLLDRLSVQFPEMRFRFTSPHPKDYPDELLYLMRDRHNICNLIHLPAQ 423

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
           SG+ RIL+ M R +T   Y  ++ +IRS+ PD+AI+SDFI GF GET+++ + T+ LV  
Sbjct: 424 SGNSRILEQMRRGYTREAYLDLVKKIRSIIPDVAITSDFITGFCGETEEEHQETLSLVRA 483

Query: 357 IGYAQAFSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIE 415
           +GY  A+ F YS R  T       + V E VK  RL  L +  RE      ++ VG I  
Sbjct: 484 VGYDMAYMFAYSMREKTHAHRKYTDDVPEEVKQRRLTELIEAFRETTGPCYNSQVGSIQL 543

Query: 416 VLIEKHGKE--KGKLVGRS-----------PWLQSVVL-----NSKNHNIGDIIKVRITD 457
           VL+E   K   + +L+G++           P   +  L       +N  IGD ++VRI  
Sbjct: 544 VLVEGPNKRAPETELIGKTDKGHRVSFVTKPLFDTACLLDGDDLKRNPEIGDFVEVRIEK 603

Query: 458 VKISTLYGELVV 469
              ++L+GE + 
Sbjct: 604 STRASLFGEALA 615


>gi|226355861|ref|YP_002785601.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Deinococcus
           deserti VCD115]
 gi|226317851|gb|ACO45847.1| putative tRNA-i 6A37 modification enzyme MiaB (2-methylthioadenine
           synthetase) [Deinococcus deserti VCD115]
          Length = 459

 Score =  258 bits (658), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 160/445 (35%), Positives = 243/445 (54%), Gaps = 22/445 (4%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V +YGCQMN YD+  +E    S G + V  +D+AD +++NTC +R K  +KV S LG +R
Sbjct: 5   VITYGCQMNEYDTHLVESQLVSLGADLVQGVDEADFVLVNTCAVRGKPVDKVRSLLGTLR 64

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE-RARFGK 147
            +K  R      L+V + GC+AQ E  + + R   V+V++GP +   + + LE   RF  
Sbjct: 65  KIKAQR-----PLVVGMMGCLAQLEEGQQMARKFEVDVLLGPGSLLDIGQALESNERF-- 117

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
                 + ++ K E    +      K  + A LTI  GCD  CT+C+VP TRG ++SRS 
Sbjct: 118 ------WGLQFKDELHEHIPPAPTGK--LQAHLTIMRGCDHHCTYCIVPTTRGPQVSRSP 169

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAW---RGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
             ++ E    +  GV E+TLLGQNVNA+   +G  L G   +F+DLL  L    G+ R++
Sbjct: 170 DDILRELDLQLAAGVQEVTLLGQNVNAYGVDQGARLAGYP-SFADLL-RLVGRSGVRRIK 227

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +TTSHP + ++ +  A  +   +  ++HLPVQSGS+ +L+ M R +T  +Y Q I  IR 
Sbjct: 228 FTTSHPMNFTEDVAAAMAETPAVCEFVHLPVQSGSNHVLRRMAREYTREKYLQHIAEIRR 287

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             P   +++D IVGFPGET++DF+ T+ L D++GY  A+ F YSPR GTP       +  
Sbjct: 288 HLPHAVLATDIIVGFPGETEEDFQDTLSLYDEVGYDSAYMFIYSPRPGTPSYKHFADLPR 347

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQ-SVVLNSK 443
            +K ERL  L  + +E     N   VG + EVL+     + G L G +     +VV  + 
Sbjct: 348 ELKTERLQRLIARQKEWSARKNAEKVGSVQEVLLRGDAHDAGFLEGHTRGNHPTVVPKAI 407

Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468
             +   +  VRI       +YG ++
Sbjct: 408 GASQAGVYPVRIEHATPHMMYGRIL 432


>gi|4006921|emb|CAB16849.1| putative protein [Arabidopsis thaliana]
 gi|7270587|emb|CAB80305.1| putative protein [Arabidopsis thaliana]
          Length = 587

 Score =  258 bits (658), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 174/512 (33%), Positives = 263/512 (51%), Gaps = 52/512 (10%)

Query: 7   LIGVAHMVSQIVDQCIVPQ-RFFVKSYGCQMNVYDSLRMEDMFFSQGY-ERVNSMDDADL 64
           L G    +   +D  I  + R + ++YGCQMN+ D   +  +  + GY E V   + A++
Sbjct: 57  LFGFILALRSTLDSDIASKGRIYHETYGCQMNINDMEIVLAIMKNSGYKEVVTDPESAEV 116

Query: 65  IVLNTCHIREKAAEKVYSFLGRIRNLK--------NSRIKEGGDLLVVVAGCVAQAEGEE 116
           I +NTC IRE A ++V+  L     LK          R K      VVV GC+A+   ++
Sbjct: 117 IFVNTCAIRENAEQRVWQRLNYFWFLKREWKVNAATGRAKSLKPPKVVVLGCMAERLKDK 176

Query: 117 ILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGV 176
           IL    +V+VV GP  Y  LP LLE   +G++ ++T  S+E+ +  +S V    N    +
Sbjct: 177 ILDSDKMVDVVCGPDAYRDLPRLLEEVDYGQKGINTLLSLEETYADISPVRISEN---SI 233

Query: 177 TAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR 236
           TAF+++  GC+  C FC+VP+TRG E SR +  ++ E  +L ++GV E+TLLGQNVN++ 
Sbjct: 234 TAFVSVMRGCNNMCAFCIVPFTRGRERSRPVESIIREVGELWESGVKEVTLLGQNVNSYN 293

Query: 237 GKGLDGE-------------KCT-------FSDLLYSLSEIKGLVRLRYTTSHPRDMSDC 276
               D E             +C        F+DLL  LS     +R R+T+ HP+D  D 
Sbjct: 294 DDSADRESGANWEYSEGFSSRCKVKNMGLRFADLLDRLSVEFPEMRFRFTSPHPKDYPDE 353

Query: 277 LIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFI 336
           L+    D   +   +HLP QSG+ RIL+ M R +T   Y  ++ +IRS+ PD+AI+SDFI
Sbjct: 354 LLYLMRDRHNICNLIHLPAQSGNSRILEQMRRGYTREAYLDLVKKIRSIIPDVAITSDFI 413

Query: 337 VGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQ 395
            GF GET+++ + T+ LV  +GY  A+ F YS R  T    N  + V E VK  RL  L 
Sbjct: 414 TGFCGETEEEHQETLSLVRAVGYDMAYMFAYSMREKTHAHRNYTDDVPEEVKQRRLTELI 473

Query: 396 KKLREQQVSFNDACVGQIIEVLIEKHGKE--KGKLVGRS-----------PWLQSVVL-- 440
              RE      D+ VG    VL+E   K   + +L+G++           P      L  
Sbjct: 474 DAFRETTGPCYDSQVGSTQLVLVEGPNKRAPETELIGKTDKGHRVSFVTKPLFDKACLLD 533

Query: 441 ---NSKNHNIGDIIKVRITDVKISTLYGELVV 469
                +N  IGD ++V+I     ++L+GE + 
Sbjct: 534 GDDLKRNPGIGDFVEVQIEKSTRASLFGEALA 565


>gi|302389477|ref|YP_003825298.1| RNA modification enzyme, MiaB family [Thermosediminibacter oceani
           DSM 16646]
 gi|302200105|gb|ADL07675.1| RNA modification enzyme, MiaB family [Thermosediminibacter oceani
           DSM 16646]
          Length = 441

 Score =  258 bits (658), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 153/453 (33%), Positives = 257/453 (56%), Gaps = 17/453 (3%)

Query: 17  IVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA 76
           ++ + I+P++    + GC++N Y+S  M ++F ++GYE V   D AD+ V+NTC +  + 
Sbjct: 1   MIGEVIMPKKVAFYTLGCKVNQYESDAMAELFKNRGYELVGFDDVADVYVINTCTVTNEG 60

Query: 77  AEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL 136
           A K        R +     +   +  + V GC AQ E EE+  R P V+VVVG +  +++
Sbjct: 61  ARKS-------RQIIRKAARRNPEATIAVVGCYAQLEAEEV-SRIPGVDVVVGTKDRHKI 112

Query: 137 PELLERA-RFGKRVVDTDYSVEDK-FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCV 194
            +L+E+A +  +++++ +  ++ + FE ++   G   R R   AFL IQEGC+ FC++C+
Sbjct: 113 VDLVEQAGKNNEKIIEVEDIMQTRNFEEIAF-RGHRQRTR---AFLKIQEGCNMFCSYCI 168

Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL 254
           +PY RG   SR+L  ++ EA  L  +G  EI L G ++  + G    G   T  D++  L
Sbjct: 169 IPYVRGPVRSRTLESIIREAENLAGDGFKEIVLTGIHLGLY-GADFKGGP-TLYDVIERL 226

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
           S I+G+ R+R ++    ++SD LIK    LD    + H+P+QSGSDRILK MNRR+T  E
Sbjct: 227 SRIEGIKRIRLSSIEAMELSDDLIKKLASLDNFCHHFHIPLQSGSDRILKLMNRRYTTAE 286

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
           + + +  IR + PD+ I++D IVGFPGETD+DF  T   +++  +++   FK+SPR GTP
Sbjct: 287 FEERLRFIRDIMPDVGITTDVIVGFPGETDEDFEITRKFIERAAFSRLHVFKFSPRKGTP 346

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPW 434
            + M +Q+   VK  R   L +  R  +  F D   G++++VL E+    +G   G +  
Sbjct: 347 AAEMPDQIPGPVKESRSRELIRLSRRLERDFRDGLTGKVLDVLFEERDN-RGLYHGLTDN 405

Query: 435 LQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
              V + S       ++ VR+ + +   ++GE+
Sbjct: 406 YIRVAVWSDQDLHNRLLPVRLIENRDEYIFGEI 438


>gi|268679070|ref|YP_003303501.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Sulfurospirillum
           deleyianum DSM 6946]
 gi|268617101|gb|ACZ11466.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Sulfurospirillum
           deleyianum DSM 6946]
          Length = 438

 Score =  258 bits (658), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 162/452 (35%), Positives = 248/452 (54%), Gaps = 27/452 (5%)

Query: 25  QRFFVKSYGCQMNVYDSLRM-EDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ ++++ GC MNV DS  +  ++   + Y   +++ +ADLI++NTC +REK   K++S 
Sbjct: 7   KKLYIETLGCAMNVRDSEHIIAELGDKENYVLTDNLQEADLILVNTCSVREKPVSKLFSE 66

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G+     N + KEG    + V GC A   G+EI +R+P VN VVG +   ++   +   
Sbjct: 67  IGKY----NLQKKEGAK--IGVCGCTASHLGKEIFKRAPYVNFVVGARNVSKIATAVNTE 120

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           +F    VD DY   D         G Y R     A++ I  GCDK CT+C+VP+TRG EI
Sbjct: 121 KF--LSVDIDYDESD------YAFGDY-RNNLYKAYVNISIGCDKKCTYCIVPHTRGDEI 171

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAW--RGKGLDGEKCTFSDLLYSLSEIKGLV 261
           S     ++ EA+K    G  EI LLGQNVN +  R      EK  FSDLL  +SEI+ + 
Sbjct: 172 SIPADLIIKEAQKAAQKGAKEIFLLGQNVNNYGKRFSSSTHEKMDFSDLLNRVSEIEEVE 231

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+T+ HP  M D  ++       +   +H+P+QSGS +IL +M R ++   +     +
Sbjct: 232 RIRFTSPHPLHMDDKFLETFAHNPKVCKSMHMPLQSGSTQILAAMKRGYSKEWFLDRALK 291

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R++ PD++IS+D IVGFPGE+D DF  T+D++ ++ + Q F+FKYS R  T  +    Q
Sbjct: 292 LRAMIPDVSISTDIIVGFPGESDADFEDTLDVMRQVRFEQVFAFKYSARPLTKAAEFTNQ 351

Query: 382 VDENVKAERLLCLQ----KKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQS 437
           VD  V +ERL  LQ      L E   S  D      I+ L     +  G L GR+     
Sbjct: 352 VDNEVASERLDRLQVMQDTILDEIATSRTDKIYPVYIDEL-----RNSGFLAGRTDNNAL 406

Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
           V +    + +G  I ++IT+ K  +LYGE+V+
Sbjct: 407 VQIKGDENLLGQTIPIKITNPKRLSLYGEIVL 438


>gi|28872784|ref|NP_057166.3| CDK5 regulatory subunit-associated protein 1 isoform b [Homo
           sapiens]
 gi|119596725|gb|EAW76319.1| CDK5 regulatory subunit associated protein 1, isoform CRA_b [Homo
           sapiens]
 gi|158257582|dbj|BAF84764.1| unnamed protein product [Homo sapiens]
          Length = 497

 Score =  258 bits (658), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 158/488 (32%), Positives = 265/488 (54%), Gaps = 39/488 (7%)

Query: 17  IVDQCIVPQR-FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREK 75
           ++D+ +  QR  ++++YGCQMNV D+     +    GY R +++ +AD+I+L TC IREK
Sbjct: 1   MMDELLGRQRKVYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCSIREK 60

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135
           A + +++ L +++ LK  R +    L + + GC+A+   EEIL R  +V+++ GP  Y  
Sbjct: 61  AEQTIWNRLHQLKALKTRRPRSRVPLRIGILGCMAERLKEEILNREKMVDILAGPDAYRD 120

Query: 136 LPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
           LP LL  A  G++  +   S+++ +  +  V    +     +AF++I  GCD  C++C+V
Sbjct: 121 LPRLLAVAESGQQAANVLLSLDETYADVMPVQTSAS---ATSAFVSIMRGCDNMCSYCIV 177

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR---------------GKGL 240
           P+TRG E SR ++ +++E +KL + G+ E+TLLGQNVN++R                +G 
Sbjct: 178 PFTRGRERSRPIASILEEVKKLSEQGLKEVTLLGQNVNSFRDNSEVQFNSAVPTNLSRGF 237

Query: 241 DGEKCT------FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP 294
                T      F+ LL  +S +   +R+R+T+ HP+D  D +++   + D +   +HLP
Sbjct: 238 TTNYKTKQGGLRFAHLLDQVSRVDPEMRIRFTSPHPKDFPDEVLQLIHERDNICKQIHLP 297

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
            QSGS R+L++M R ++   Y +++  IR   P +++SSDFI GF GET++D   T+ L+
Sbjct: 298 AQSGSSRVLEAMRRGYSREAYVELVHHIRESIPGVSLSSDFIAGFCGETEEDHVQTVSLL 357

Query: 355 DKIGYAQAFSFKYSPRLGTPGSNML-EQVDENVKAERLLCLQKKLREQQVSFNDACVGQI 413
            ++ Y   F F YS R  T   + L + V E VK  RL  L    RE+    N   VG  
Sbjct: 358 REVQYNMGFLFAYSMRQKTRAYHRLKDDVPEEVKLRRLEELITIFREEATKANQTSVGCT 417

Query: 414 IEVLIEKHGKEKGK-LVGRSPW-LQSVVLNSKNHNI-----------GDIIKVRITDVKI 460
             VL+E   K     L GR+   L+ +  +++  ++           GD + V+IT    
Sbjct: 418 QLVLVEGLSKRSATDLCGRNDGNLKVIFPDAEMEDVNNPGLRVRAQPGDYVLVKITSASS 477

Query: 461 STLYGELV 468
            TL G ++
Sbjct: 478 QTLRGHVL 485


>gi|62897049|dbj|BAD96465.1| CDK5 regulatory subunit associated protein 1 isoform a variant
           [Homo sapiens]
          Length = 586

 Score =  258 bits (658), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 156/487 (32%), Positives = 263/487 (54%), Gaps = 38/487 (7%)

Query: 17  IVDQCIVPQR-FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREK 75
           ++D+ +  QR  ++++YGCQMNV D+     +    GY R +++ +AD+I+L TC IREK
Sbjct: 91  MMDELLGRQRKVYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCSIREK 150

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135
           A + +++ L +++ LK  R +    L + + GC+A+   EEIL R  +V+++ GP  Y  
Sbjct: 151 AEQTIWNRLHQLKALKTRRPRSRVPLRIGILGCMAERLKEEILNREKMVDILAGPDAYRD 210

Query: 136 LPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
           LP LL  A  G++  +   S+++ +  +  V    +     +AF++I  GCD  C++C+V
Sbjct: 211 LPRLLAVAESGQQAANVLLSLDETYADVMPVQTSAS---ATSAFVSIMRGCDNMCSYCIV 267

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR---------------GKGL 240
           P+TRG E SR ++ +++E +KL + G+ E+TLLGQNVN++R                +G 
Sbjct: 268 PFTRGRERSRPIASILEEVKKLSEQGLKEVTLLGQNVNSFRDNSEVQFNSAVPTNLSRGF 327

Query: 241 DGEKCT------FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP 294
                T      F+ LL  +S +   +R+R+T+ HP+D  D +++   + D +   +HLP
Sbjct: 328 TTNYKTKQGGLRFAHLLDQVSRVDPEMRIRFTSPHPKDFPDEVLQLIHERDNICKQIHLP 387

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
            QSGS R+L++M R ++   Y +++  IR   P +++SSDFI GF GET++D   T+ L+
Sbjct: 388 AQSGSSRVLEAMRRGYSREAYVELVHHIRESIPGVSLSSDFIAGFCGETEEDHVQTVSLL 447

Query: 355 DKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQII 414
            ++ Y   F F YS R       + + V E VK  RL  L    RE+    N   VG   
Sbjct: 448 REVQYNMGFLFAYSMRQTRAYHRLKDDVPEEVKLRRLEELITIFREEATKANQTSVGCTQ 507

Query: 415 EVLIEKHGKEKGK-LVGRSPW-LQSVVLNSKNHNI-----------GDIIKVRITDVKIS 461
            VL+E   K     L GR+   L+ +  +++  ++           GD + V+IT     
Sbjct: 508 LVLVEGLSKRSATDLCGRNDGNLKVIFPDAEMEDVNNPGLRVRAQPGDYVLVKITSASSQ 567

Query: 462 TLYGELV 468
           TL G ++
Sbjct: 568 TLRGHVL 574


>gi|329911495|ref|ZP_08275546.1| tRNA-i(6)A37 methylthiotransferase [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327545867|gb|EGF30978.1| tRNA-i(6)A37 methylthiotransferase [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 306

 Score =  257 bits (657), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 133/287 (46%), Positives = 185/287 (64%), Gaps = 3/287 (1%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
           ++I EGC K+C++CVVPYTRG E+SR    V+ E   L   GV EITLLGQNVNA+RG  
Sbjct: 1   MSIMEGCSKYCSYCVVPYTRGEEVSRRFDDVLAEVAGLAAQGVKEITLLGQNVNAFRGVM 60

Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
            DGE   F+ L+  ++EI G+ R+R+ TSHP++ S  LI A+  +  L+ +L+LP Q GS
Sbjct: 61  ADGEIADFALLIEFIAEIDGIERIRFVTSHPKEFSQRLIDAYAKVPKLVDHLYLPAQHGS 120

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
           DR+L +M R +TA EY+ II R+R+VRP+IAISSDFIVGFPGET+ DF A M L+D IGY
Sbjct: 121 DRVLMAMKRGYTALEYKSIIRRLRAVRPNIAISSDFIVGFPGETEADFEAMMKLIDDIGY 180

Query: 360 AQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419
             +FSF +SPR GTP + + +     VK  RL  LQ  +      ++DA VGQ++ VL+E
Sbjct: 181 DNSFSFIFSPRPGTPAATLEDDTPHAVKLARLQRLQAVIDANTRRYSDAMVGQVVRVLVE 240

Query: 420 -KHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYG 465
               K+ G   GR+    + V+N      G  +  ++ D+ I+  +G
Sbjct: 241 GPSKKDAGDFQGRAE--NNRVVNFAAGPDGASLVGQLLDLTITHSFG 285


>gi|194379922|dbj|BAG58313.1| unnamed protein product [Homo sapiens]
          Length = 534

 Score =  257 bits (657), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 158/488 (32%), Positives = 265/488 (54%), Gaps = 39/488 (7%)

Query: 17  IVDQCIVPQR-FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREK 75
           ++D+ +  QR  ++++YGCQMNV D+     +    GY R +++ +AD+I+L TC IREK
Sbjct: 38  MMDELLGRQRKVYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCSIREK 97

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135
           A + +++ L +++ LK  R +    L + + GC+A+   EEIL R  +V+++ GP  Y  
Sbjct: 98  AEQTIWNRLHQLKALKTRRPRSRVPLRIGILGCMAERLKEEILNREKMVDILAGPDAYRD 157

Query: 136 LPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
           LP LL  A  G++  +   S+++ +  +  V    +     +AF++I  GCD  C++C+V
Sbjct: 158 LPRLLAVAESGQQAANVLLSLDETYADVMPVQTSAS---ATSAFVSIMRGCDNMCSYCIV 214

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR---------------GKGL 240
           P+TRG E SR ++ +++E +KL + G+ E+TLLGQNVN++R                +G 
Sbjct: 215 PFTRGRERSRPIASILEEVKKLSEQGLKEVTLLGQNVNSFRDNSEVQFNSAVPTNLSRGF 274

Query: 241 DGEKCT------FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP 294
                T      F+ LL  +S +   +R+R+T+ HP+D  D +++   + D +   +HLP
Sbjct: 275 TTNYKTKQGGLRFAHLLDQVSRVDPEMRIRFTSPHPKDFPDEVLQLIHERDNICKQIHLP 334

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
            QSGS R+L++M R ++   Y +++  IR   P +++SSDFI GF GET++D   T+ L+
Sbjct: 335 AQSGSSRVLEAMRRGYSREAYVELVHHIRESIPGVSLSSDFIAGFCGETEEDHVQTVSLL 394

Query: 355 DKIGYAQAFSFKYSPRLGTPGSNML-EQVDENVKAERLLCLQKKLREQQVSFNDACVGQI 413
            ++ Y   F F YS R  T   + L + V E VK  RL  L    RE+    N   VG  
Sbjct: 395 REVQYNMGFLFAYSMRQKTRAYHRLKDDVPEEVKLRRLEELITIFREEATKANQTSVGCT 454

Query: 414 IEVLIEKHGKEKG-KLVGRSPW-LQSVVLNSKNHNI-----------GDIIKVRITDVKI 460
             VL+E   K     L GR+   L+ +  +++  ++           GD + V+IT    
Sbjct: 455 QLVLVEGLSKRSATALCGRNDGNLKVIFPDAEMEDVNNPGLRVRAQPGDYVLVKITSASS 514

Query: 461 STLYGELV 468
            TL G ++
Sbjct: 515 QTLRGHVL 522


>gi|28872782|ref|NP_057492.2| CDK5 regulatory subunit-associated protein 1 isoform a [Homo
           sapiens]
 gi|29791797|gb|AAH50706.1| CDK5 regulatory subunit associated protein 1 [Homo sapiens]
 gi|56205141|emb|CAI19394.1| CDK5 regulatory subunit associated protein 1 [Homo sapiens]
 gi|119596729|gb|EAW76323.1| CDK5 regulatory subunit associated protein 1, isoform CRA_f [Homo
           sapiens]
 gi|208965952|dbj|BAG72990.1| CDK5 regulatory subunit associated protein 1 [synthetic construct]
          Length = 587

 Score =  257 bits (657), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 158/488 (32%), Positives = 265/488 (54%), Gaps = 39/488 (7%)

Query: 17  IVDQCIVPQR-FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREK 75
           ++D+ +  QR  ++++YGCQMNV D+     +    GY R +++ +AD+I+L TC IREK
Sbjct: 91  MMDELLGRQRKVYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCSIREK 150

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135
           A + +++ L +++ LK  R +    L + + GC+A+   EEIL R  +V+++ GP  Y  
Sbjct: 151 AEQTIWNRLHQLKALKTRRPRSRVPLRIGILGCMAERLKEEILNREKMVDILAGPDAYRD 210

Query: 136 LPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
           LP LL  A  G++  +   S+++ +  +  V    +     +AF++I  GCD  C++C+V
Sbjct: 211 LPRLLAVAESGQQAANVLLSLDETYADVMPVQTSAS---ATSAFVSIMRGCDNMCSYCIV 267

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR---------------GKGL 240
           P+TRG E SR ++ +++E +KL + G+ E+TLLGQNVN++R                +G 
Sbjct: 268 PFTRGRERSRPIASILEEVKKLSEQGLKEVTLLGQNVNSFRDNSEVQFNSAVPTNLSRGF 327

Query: 241 DGEKCT------FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP 294
                T      F+ LL  +S +   +R+R+T+ HP+D  D +++   + D +   +HLP
Sbjct: 328 TTNYKTKQGGLRFAHLLDQVSRVDPEMRIRFTSPHPKDFPDEVLQLIHERDNICKQIHLP 387

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
            QSGS R+L++M R ++   Y +++  IR   P +++SSDFI GF GET++D   T+ L+
Sbjct: 388 AQSGSSRVLEAMRRGYSREAYVELVHHIRESIPGVSLSSDFIAGFCGETEEDHVQTVSLL 447

Query: 355 DKIGYAQAFSFKYSPRLGTPGSNML-EQVDENVKAERLLCLQKKLREQQVSFNDACVGQI 413
            ++ Y   F F YS R  T   + L + V E VK  RL  L    RE+    N   VG  
Sbjct: 448 REVQYNMGFLFAYSMRQKTRAYHRLKDDVPEEVKLRRLEELITIFREEATKANQTSVGCT 507

Query: 414 IEVLIEKHGKEKGK-LVGRSPW-LQSVVLNSKNHNI-----------GDIIKVRITDVKI 460
             VL+E   K     L GR+   L+ +  +++  ++           GD + V+IT    
Sbjct: 508 QLVLVEGLSKRSATDLCGRNDGNLKVIFPDAEMEDVNNPGLRVRAQPGDYVLVKITSASS 567

Query: 461 STLYGELV 468
            TL G ++
Sbjct: 568 QTLRGHVL 575


>gi|268611648|ref|ZP_06145375.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Ruminococcus
           flavefaciens FD-1]
          Length = 456

 Score =  257 bits (657), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 155/438 (35%), Positives = 243/438 (55%), Gaps = 18/438 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + +V+S+GCQ +V D  +++ +    G       ++AD+I+LNTC +RE A ++V+  +G
Sbjct: 21  KAYVRSFGCQQSVSDGEKIKGLLGLMGCSFTEDENEADMIILNTCAVRENAEDRVFGIVG 80

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCV-AQAEGEEILRRS-PIVNVVVGPQTYYRLPELLERA 143
            ++ LK  +      L++ +AGC+ AQ+   E +++S P V+ V+G      LP LL   
Sbjct: 81  SMKKLKELK----PSLIIGIAGCMTAQSHVAEKIKKSYPQVDFVMGTSAISSLPHLLLEC 136

Query: 144 RFGKRVVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
             G +    D S  D F  +   I D  +       A + +  GC+ FCT+C+VPY RG 
Sbjct: 137 LNGAKF-SADISEYDDFSAVVPQIRDSSFK------ASVPVMFGCNNFCTYCIVPYVRGR 189

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR    +++E R L+ +G  EI LLGQNVN++ GK L+    TF  LL  L +I+G  
Sbjct: 190 ERSRQPQDIINEVRGLVRDGYKEIMLLGQNVNSY-GKDLEN-GMTFPQLLRELDKIEGDF 247

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
            +R+ +SHP+D +  L  A  D   +  +LHLPVQSGS+ +L+ MNRR+T  +Y + +D 
Sbjct: 248 WIRFMSSHPKDATKKLADAIFDCTKVAKHLHLPVQSGSNDVLRRMNRRYTVEKYMETVDY 307

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           IR   PD ++++D IVGFP E D+DF AT+D++ ++ Y   +SF YS R GT  + M + 
Sbjct: 308 IRQRDPDFSLTTDLIVGFPDEKDEDFEATLDIIRRVKYDNIYSFIYSKRTGTKAAEMDDP 367

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSPWLQSVVL 440
           + +  K  R+  L +  RE         +G+ + VL + K  K +G L G+S     V  
Sbjct: 368 ITDEEKGMRMRRLLEVQREISSEHYKRFIGRTMRVLADGKAKKREGWLTGKSSEFIIVEF 427

Query: 441 NSKNHNIGDIIKVRITDV 458
              +  IG  + V ITD 
Sbjct: 428 EGDSSLIGQFVDVEITDA 445


>gi|217967463|ref|YP_002352969.1| RNA modification enzyme, MiaB family [Dictyoglomus turgidum DSM
           6724]
 gi|217336562|gb|ACK42355.1| RNA modification enzyme, MiaB family [Dictyoglomus turgidum DSM
           6724]
          Length = 441

 Score =  257 bits (656), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 161/445 (36%), Positives = 253/445 (56%), Gaps = 13/445 (2%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           ++ + +YGCQMN  DS ++  +  S GY     M++ADLI+LNTC +RE+A EKV+  LG
Sbjct: 3   KYHIITYGCQMNKSDSEKVAGILESLGYIPSEKMEEADLILLNTCSVRERAEEKVFGKLG 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR- 144
            +R LK    K    LL+ + GC+AQ   EE++ + P V+ V+G   +  LP++LE    
Sbjct: 63  ELRKLKKKNQK----LLIGIFGCMAQRMKEELIEKFPHVDFVLGSYKFTELPKVLESLND 118

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
             K++V  + + + +     I+     R+    A++ I  GC+ FCT+C+VPY RG E S
Sbjct: 119 NNKKIVLAEDNPKPEEVDFRII----RRENKFQAWIPIIYGCNNFCTYCIVPYLRGKEKS 174

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R   +++ E   L + GV E+TLLGQNV+++   G D      +DLL  + +I G+ R+R
Sbjct: 175 RDPQEIIKEIEHLANQGVVEVTLLGQNVDSY---GKDLGNVDLADLLVEIHKIPGIKRIR 231

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           + TSHPRD+SD LI        + P+ HLP+Q+GSDRIL+ M R +T  EY+ +I++IR+
Sbjct: 232 FLTSHPRDVSDKLINVVATHPKICPHWHLPLQAGSDRILRRMGRGYTYNEYKALIEKIRA 291

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             P  + S+D IVGFPGE ++DF AT   +++I +       YS R GTP ++  + V  
Sbjct: 292 KIPRASFSTDIIVGFPGEEEEDFLATRRALEEIKFDTVNLAIYSKRPGTPAASYDDPVPY 351

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSVVLNSK 443
             K +    L+   R+     N + +G+   VL E  + K   +L GR+   + V   + 
Sbjct: 352 ETKKKWFDELENLQRKIIYERNLSMIGKEELVLAEGVNPKNPKELSGRTENYRLVFFEAD 411

Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468
              IG  + VRI + ++ +L GE +
Sbjct: 412 RKLIGKFLLVRIIEARLWSLRGEAI 436


>gi|296125881|ref|YP_003633133.1| RNA modification enzyme, MiaB family [Brachyspira murdochii DSM
           12563]
 gi|296017697|gb|ADG70934.1| RNA modification enzyme, MiaB family [Brachyspira murdochii DSM
           12563]
          Length = 435

 Score =  256 bits (655), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 153/454 (33%), Positives = 249/454 (54%), Gaps = 30/454 (6%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + F++++YGCQMN  DS  + +    +G+ +  + ++AD I++NTC +R  A E+V+S  
Sbjct: 2   KNFYLENYGCQMNKADSNSLINSLMQEGFIQTENYENADNIIINTCSVRAHAEERVFS-- 59

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGE--EILRRSPIVNVV--VGPQTYYRLPELL 140
            R++    +R K   D  +++ GC+AQ   E  E L  + I +V   V    Y +  E+ 
Sbjct: 60  -RVKLFNANRKKNKKDTKIIIMGCMAQTSKEKLESLGVNKIFDVYNEVNIIDYLKDEEVF 118

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
            R      + +  Y  EDK  +               AF+ I  GC+ +CT+C+VP+TRG
Sbjct: 119 VRKFNDNYIFNKSYVDEDKPHK---------------AFIPISHGCNNWCTYCIVPHTRG 163

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI--- 257
             +SR   ++++E ++LID+G  EITLLGQNVN++ G  +D E   F++LLY + ++   
Sbjct: 164 KMVSRKSYEIIEELKRLIDDGAKEITLLGQNVNSY-GLDIDNE-INFTELLYKIDKVIDE 221

Query: 258 --KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
             K  V +R+ TSHP+D    L  A  +L+ L  ++HLP QSGSDRILK MNR++T  EY
Sbjct: 222 KSKNKVWIRFLTSHPKDFDKDLADAIWNLNSLCKHIHLPFQSGSDRILKLMNRKYTKEEY 281

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
              +  +R    D  IS+D IVG+  ET+D++  T++L++ IG+ +A+ +KYS R G+  
Sbjct: 282 LTKVSYLRDYAKDFPISTDVIVGYADETEDEYNETLELLESIGFEEAYLYKYSEREGSIA 341

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWL 435
                + D+   A RL  L    RE         VG+   V+I+   K+    + RS   
Sbjct: 342 YKKRVEYDKASGARRLTKLVNYQRELAQKLLANQVGKKTSVMIDDTAKDNMHYLCRSKEN 401

Query: 436 QSVVL-NSKNHNIGDIIKVRITDVKISTLYGELV 468
           + +++   K  N+GDI    + ++K  TL G+ +
Sbjct: 402 RIILIKKEKELNMGDIFNAEVAEIKSHTLIGKFI 435


>gi|147794658|emb|CAN73510.1| hypothetical protein VITISV_007911 [Vitis vinifera]
          Length = 590

 Score =  256 bits (655), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 172/497 (34%), Positives = 260/497 (52%), Gaps = 52/497 (10%)

Query: 22  IVPQ-RFFVKSYGCQMNVYDSLRMEDMFFSQGY-ERVNSMDDADLIVLNTCHIREKAAEK 79
           I+P+ R + ++YGCQMN+ D   +  +    GY E V   + A++I +NTC IR+ A +K
Sbjct: 71  ILPRGRIYHETYGCQMNINDMEIVLSIMKKAGYNEVVEVPESAEVIFINTCAIRDNAEQK 130

Query: 80  VYSFLGRIRNLK-----NSRIKEGGDLL---VVVAGCVAQAEGEEILRRSPIVNVVVGPQ 131
           V+  L     LK     N  I     L    VVV GC+A+   ++IL    +V+VV GP 
Sbjct: 131 VWQRLNYFWFLKRHWKSNVSIGRADSLHPPKVVVLGCMAERLKDKILDADKMVDVVCGPD 190

Query: 132 TYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCT 191
            Y  LP LLE   +G++ ++T  S+E+ +  +S V      K  VTAF++I  GC+  C+
Sbjct: 191 AYRDLPRLLEEVDYGQKGINTLLSLEETYADISPVRIS---KNSVTAFVSIMRGCNNMCS 247

Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR-GKGLDGE------- 243
           FC+VP+TRG E SR +  +V E  +L   GV E+ LLGQNVN++    G D E       
Sbjct: 248 FCIVPFTRGRERSRPVESIVREVAELWKEGVKEVMLLGQNVNSYNDASGFDKEVEPGANW 307

Query: 244 --------KCT-------FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLM 288
                   KC        FSDLL  LS     +R RYT+ HP+D  D L+    D   + 
Sbjct: 308 KLSEGFSSKCKVKKMGLRFSDLLDRLSTEFPEMRFRYTSPHPKDFPDELLYLMRDRYNVC 367

Query: 289 PYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFR 348
             +HLP Q+GS  +L+ M R +T   Y  ++ +IR + PD+ I+SDFI GF GET++++ 
Sbjct: 368 KSIHLPAQTGSSTVLERMRRGYTREAYLDLVQKIRRIVPDVGITSDFICGFCGETEEEYA 427

Query: 349 ATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFND 407
            T+ LV  +GY  A+ F YS R  T    N ++ V +N+K  RL  + +  RE      D
Sbjct: 428 DTISLVKAVGYDMAYMFAYSMREKTHAHRNYVDDVPDNIKQRRLAEMIEVFRESTGQCYD 487

Query: 408 ACVGQIIEVLIEKHGKEK--GKLVGRS-------------PWLQSVVLNSKNHNIGDIIK 452
           + +G +  VL+E   K     +L+G++             P     V  ++N  +GD ++
Sbjct: 488 SQIGTVQLVLVEGPNKRAPDTELIGKTDRGHRVSFKNTPVPHWDDDVGGNQNPRVGDFVE 547

Query: 453 VRITDVKISTLYGELVV 469
           VRI     ++L+GE + 
Sbjct: 548 VRILTSTRASLFGEALA 564


>gi|225431257|ref|XP_002274814.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 626

 Score =  256 bits (654), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 172/497 (34%), Positives = 260/497 (52%), Gaps = 52/497 (10%)

Query: 22  IVPQ-RFFVKSYGCQMNVYDSLRMEDMFFSQGY-ERVNSMDDADLIVLNTCHIREKAAEK 79
           I+P+ R + ++YGCQMN+ D   +  +    GY E V   + A++I +NTC IR+ A +K
Sbjct: 107 ILPRGRIYHETYGCQMNINDMEIVLSIMKKAGYNEVVEVPESAEVIFINTCAIRDNAEQK 166

Query: 80  VYSFLGRIRNLK-----NSRIKEGGDLL---VVVAGCVAQAEGEEILRRSPIVNVVVGPQ 131
           V+  L     LK     N  I     L    VVV GC+A+   ++IL    +V+VV GP 
Sbjct: 167 VWQRLNYFWFLKRHWKSNVSIGRADSLHPPKVVVLGCMAERLKDKILDADKMVDVVCGPD 226

Query: 132 TYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCT 191
            Y  LP LLE   +G++ ++T  S+E+ +  +S V    N    VTAF++I  GC+  C+
Sbjct: 227 AYRDLPRLLEEVDYGQKGINTLLSLEETYADISPVRISKN---SVTAFVSIMRGCNNMCS 283

Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR-GKGLDGE------- 243
           FC+VP+TRG E SR +  +V E  +L   GV E+ LLGQNVN++    G D E       
Sbjct: 284 FCIVPFTRGRERSRPVESIVREVAELWKEGVKEVMLLGQNVNSYNDASGFDKEVEPGANW 343

Query: 244 --------KCT-------FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLM 288
                   KC        FSDLL  LS     +R RYT+ HP+D  D L+    D   + 
Sbjct: 344 KLSEGFSSKCKVKKMGLRFSDLLDRLSTEFPEMRFRYTSPHPKDFPDELLYLMRDRYNVC 403

Query: 289 PYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFR 348
             +HLP Q+GS  +L+ M R +T   Y  ++ +IR + PD+ I+SDFI GF GET++++ 
Sbjct: 404 KSIHLPAQTGSSTVLERMRRGYTREAYLDLVQKIRRIVPDVGITSDFICGFCGETEEEYA 463

Query: 349 ATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFND 407
            T+ LV  +GY  A+ F YS R  T    N ++ V +N+K  RL  + +  RE      D
Sbjct: 464 DTISLVKAVGYDMAYMFAYSMREKTHAHRNYVDDVPDNIKQRRLAEMIEVFRESTGQCYD 523

Query: 408 ACVGQIIEVLIEKHGKEKG--KLVGRS-------------PWLQSVVLNSKNHNIGDIIK 452
           + +G +  VL+E   K     +L+G++             P     V  ++N  +GD ++
Sbjct: 524 SQIGTVQLVLVEGPNKRAPDTELIGKTDRGHRVSFKNTPVPHWDDDVGGNQNPRVGDFVE 583

Query: 453 VRITDVKISTLYGELVV 469
           VRI     ++L+GE + 
Sbjct: 584 VRILTSTRASLFGEALA 600


>gi|300770384|ref|ZP_07080263.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Sphingobacterium
           spiritivorum ATCC 33861]
 gi|300762860|gb|EFK59677.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Sphingobacterium
           spiritivorum ATCC 33861]
          Length = 478

 Score =  256 bits (654), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 154/453 (33%), Positives = 254/453 (56%), Gaps = 16/453 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ +++SYGCQMN  DS  +  +   +G+E     ++AD++ +NTC IRE A  +V +  
Sbjct: 32  RKLYIESYGCQMNFSDSEIVASILMDKGFETTKDFNEADVVFINTCSIRENAETRVRN-- 89

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R++  + ++ K  G ++V V GC+A+    + L    +V+VVVGP  Y  LP L+E+  
Sbjct: 90  -RLKEFEFAKSKNPG-MIVGVLGCMAERLKSKFLEEEKLVDVVVGPDAYRDLPNLIEQVD 147

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G + V+   S E+ +  ++ V    N   G+TAF++I  GCD  C+FCVVP+TRG E S
Sbjct: 148 DGAKAVNVLLSREETYADINPVRLNTN---GITAFISIMRGCDNMCSFCVVPFTRGRERS 204

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG------LDGEKCTFSDLLYSLSEIK 258
           R +  ++ EA+ L + G  E+TLLGQNV++++            E   F+ LL  ++++ 
Sbjct: 205 RDVDSIIKEAQDLFNAGYREVTLLGQNVDSYKFTAPVAEGESPAEPVNFAQLLAKVADVS 264

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
            L+R+R++TSHP+D++D ++      + +  Y+HLPVQSG+ R+L+ MNR +    Y   
Sbjct: 265 PLLRVRFSTSHPKDITDEVLHTMARYENICNYIHLPVQSGNSRVLELMNRTYDRAWYIDR 324

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           +D IR + P+  IS+D I GF  ET+++ + T+ ++D + Y  A+ F YS R GT  +  
Sbjct: 325 VDAIRRILPECGISTDVITGFCTETEEEHQETLSMMDYVKYDYAYMFAYSERPGTLAAKR 384

Query: 379 LE-QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQ 436
            E  + E +K  RL  +  K R          VG++ ++LIE + K   +   GR+    
Sbjct: 385 YEDDIPEEIKKRRLTEVVAKQRLHSHYRIQNFVGKVHKILIEGYSKRSDQDFAGRNDQNA 444

Query: 437 SVVLNSKN-HNIGDIIKVRITDVKISTLYGELV 468
            VV    N + IGD + V       +TL G +V
Sbjct: 445 MVVFPVDNRYKIGDYVNVIGESCTSATLLGRIV 477


>gi|10436223|dbj|BAB14760.1| unnamed protein product [Homo sapiens]
          Length = 587

 Score =  256 bits (654), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 158/488 (32%), Positives = 264/488 (54%), Gaps = 39/488 (7%)

Query: 17  IVDQCIVPQR-FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREK 75
           ++D+ +  QR  ++++YGCQMNV D+     +    GY R +++ +AD+I+L TC IREK
Sbjct: 91  MMDELLGRQRKVYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCSIREK 150

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135
           A + +++ L +++ LK  R +    L + + GC+A+   EEIL R  +V+++ GP  Y  
Sbjct: 151 AEQTIWNRLHQLKALKTRRPRSRVPLRIGILGCMAERLKEEILNREKMVDILAGPDAYRD 210

Query: 136 LPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
           LP LL  A  G++  +   S+++ +  +  V    +     +AF++I  GCD  C++C+V
Sbjct: 211 LPRLLAVAESGQQAANVLLSLDETYADVMPVQTSAS---ATSAFVSIMRGCDNMCSYCIV 267

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR---------------GKGL 240
           P+TRG E SR ++ +++E +KL + G+ E+TLLGQNVN++R                +G 
Sbjct: 268 PFTRGRERSRPIASILEEVKKLSEQGLKEVTLLGQNVNSFRDNSEVQFNSAVPTNLSRGF 327

Query: 241 DGEKCT------FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP 294
                T      F+ LL  +S +   +R+R+T+ HP+D  D +++   + D +   +HLP
Sbjct: 328 TTNYKTKQGGLRFAHLLDQVSRVDPEMRIRFTSPHPKDFPDEVLQLIHERDNICKQIHLP 387

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
            QSGS R+L++M R ++   Y +++  IR   P +++SSDFI GF GET++D   T+ L+
Sbjct: 388 AQSGSSRVLEAMRRGYSREAYVELVHHIRESIPGVSLSSDFIAGFCGETEEDHVQTVSLL 447

Query: 355 DKIGYAQAFSFKYSPRLGTPGSNML-EQVDENVKAERLLCLQKKLREQQVSFNDACVGQI 413
            +  Y   F F YS R  T   + L + V E VK  RL  L    RE+    N   VG  
Sbjct: 448 REAQYNMGFLFAYSMRQKTRAYHRLKDDVPEEVKLRRLEELITIFREEATKANQTSVGCT 507

Query: 414 IEVLIEKHGKEKGK-LVGRSPW-LQSVVLNSKNHNI-----------GDIIKVRITDVKI 460
             VL+E   K     L GR+   L+ +  +++  ++           GD + V+IT    
Sbjct: 508 QLVLVEGLSKRSATDLCGRNDGNLKVIFPDAEMEDVNNPGLRVRAQPGDYVLVKITSASS 567

Query: 461 STLYGELV 468
            TL G ++
Sbjct: 568 QTLKGHVL 575


>gi|297735074|emb|CBI17436.3| unnamed protein product [Vitis vinifera]
          Length = 663

 Score =  256 bits (653), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 166/475 (34%), Positives = 257/475 (54%), Gaps = 32/475 (6%)

Query: 22  IVPQ-RFFVKSYGCQMNVYDSLRMEDMFFSQGY-ERVNSMDDADLIVLNTCHIREKAAEK 79
           I+P+ R + ++YGCQMN+ D   +  +    GY E V   + A++I +NTC IR+ A +K
Sbjct: 178 ILPRGRIYHETYGCQMNINDMEIVLSIMKKAGYNEVVEVPESAEVIFINTCAIRDNAEQK 237

Query: 80  VYSFLGRIRNLK-----NSRIKEGGDLL---VVVAGCVAQAEGEEILRRSPIVNVVVGPQ 131
           V+  L     LK     N  I     L    VVV GC+A+   ++IL    +V+VV GP 
Sbjct: 238 VWQRLNYFWFLKRHWKSNVSIGRADSLHPPKVVVLGCMAERLKDKILDADKMVDVVCGPD 297

Query: 132 TYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCT 191
            Y  LP LLE   +G++ ++T  S+E+ +  +S V      K  VTAF++I  GC+  C+
Sbjct: 298 AYRDLPRLLEEVDYGQKGINTLLSLEETYADISPVRIS---KNSVTAFVSIMRGCNNMCS 354

Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR-GKGLDGEKCTFSDL 250
           FC+VP+TRG E SR +  +V E  +L   GV E+ LLGQNVN++    G D E    ++ 
Sbjct: 355 FCIVPFTRGRERSRPVESIVREVAELWKEGVKEVMLLGQNVNSYNDASGFDKEVEPGAN- 413

Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
            + LSE    +R RYT+ HP+D  D L+    D   +   +HLP Q+GS  +L+ M R +
Sbjct: 414 -WKLSEEFPEMRFRYTSPHPKDFPDELLYLMRDRYNVCKSIHLPAQTGSSTVLERMRRGY 472

Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370
           T   Y  ++ +IR + PD+ I+SDFI GF GET++++  T+ LV  +GY  A+ F YS R
Sbjct: 473 TREAYLDLVQKIRRIVPDVGITSDFICGFCGETEEEYADTISLVKAVGYDMAYMFAYSMR 532

Query: 371 LGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG--K 427
             T    N ++ V +N+K  RL  + +  RE      D+ +G +  VL+E   K     +
Sbjct: 533 EKTHAHRNYVDDVPDNIKQRRLAEMIEVFRESTGQCYDSQIGTVQLVLVEGPNKRAPDTE 592

Query: 428 LVGRS-------------PWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
           L+G++             P     V  ++N  +GD ++VRI     ++L+GE + 
Sbjct: 593 LIGKTDRGHRVSFKNTPVPHWDDDVGGNQNPRVGDFVEVRILTSTRASLFGEALA 647


>gi|154497029|ref|ZP_02035725.1| hypothetical protein BACCAP_01322 [Bacteroides capillosus ATCC
           29799]
 gi|150273428|gb|EDN00556.1| hypothetical protein BACCAP_01322 [Bacteroides capillosus ATCC
           29799]
          Length = 471

 Score =  256 bits (653), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 157/449 (34%), Positives = 247/449 (55%), Gaps = 23/449 (5%)

Query: 28  FVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRI 87
           FV +YGCQ N  DS R+       GY       +A +IV+NTC IRE A ++V   +G +
Sbjct: 37  FVDTYGCQQNEADSERIRGYLKEMGYGFTQDEKEAAVIVINTCAIREHAEQRVLGNVGAL 96

Query: 88  RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPI--VNVVVGPQTYYRLPELLER--A 143
            + K    ++  + ++ + GC+ Q        R+    V++V GP   +R PE L R   
Sbjct: 97  VHTK----RKNPNQIICLCGCMVQEPHNAAKIRTSYRHVDMVFGPHALWRFPEFLYRILT 152

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           R G R+ +T        E + +V     R+ GV A+++I  GC+ FC++C+VPY RG E 
Sbjct: 153 RRG-RIFETADDPGSIAEGIPVV-----RQNGVKAWVSIMYGCNNFCSYCIVPYVRGRER 206

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR    ++ E  +L   G  EITLLGQNVN++ GK L  E   F+DLL  ++ + G   +
Sbjct: 207 SRDPEGILAEVEELAKAGYKEITLLGQNVNSY-GKDLP-EPMDFADLLRKVNAVPGDFLI 264

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+ TSHP+D ++ L  A  + + + P +HLPVQ+G++R+LK+MNR +T   Y + + ++R
Sbjct: 265 RFMTSHPKDATEKLFDAMAECEKVAPVIHLPVQAGNNRVLKAMNRVYTREIYLEKVRQLR 324

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              PDI ++SD IVGFPGET ++F  TM L+ ++ Y   F+F YSPR GTP + M + + 
Sbjct: 325 QRIPDIVLTSDIIVGFPGETTEEFEDTMSLLREVEYDALFTFIYSPREGTPAAKMPDPMS 384

Query: 384 ENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSPWLQSVV 439
           +  K+   +RL+ LQ ++  ++   + A  G+ I  L++ +    +  L  R+P  + V 
Sbjct: 385 KEEKSANFQRLVDLQNEISLKK---HQAYEGKTIRCLVDGRSDDPRNNLTARTPGGRLVH 441

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG    + IT      L+GEL 
Sbjct: 442 FTGDEKLIGTYQNLTITGCSTWALFGELA 470


>gi|327289365|ref|XP_003229395.1| PREDICTED: CDK5 regulatory subunit-associated protein 1-like
           [Anolis carolinensis]
          Length = 591

 Score =  256 bits (653), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 163/477 (34%), Positives = 252/477 (52%), Gaps = 38/477 (7%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P + ++++YGCQMNV D+     +    GY+R   +++AD+I+L TC IREKA + +++ 
Sbjct: 103 PGKVYLETYGCQMNVNDTEIAWSILQRSGYQRTTRLEEADVILLVTCSIREKAEQTIWNR 162

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           L  ++ LK  R    G L + + GC+A+   E+IL R  +V+VV GP +Y  LP LL  A
Sbjct: 163 LKHLKTLKLKRPASQGALRIGILGCMAERLKEKILDRERLVDVVAGPDSYRDLPRLLTVA 222

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             G++  +   S+E+ +  +  V          +AF++I  GCD  CT+C+VP+TRG E 
Sbjct: 223 ESGQQAANVLLSLEETYADILPVQ---TNPSSTSAFVSIMRGCDNMCTYCIVPFTRGRER 279

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR---------------GKGLDG------ 242
           SR +  ++ E + L D GV E+TLLGQNVN++R                +G         
Sbjct: 280 SRPIVSILQEVQMLSDQGVKEVTLLGQNVNSYRDVSEVQFLSSAPSHLSRGFSTVYRPKQ 339

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
               F++LL  +S I   +R+R+T+ HP+D  D + +   +   +   LHLPVQSGS RI
Sbjct: 340 GGLRFAELLDRVSVIDPEMRIRFTSPHPKDFPDEVFQLMKERHNICKQLHLPVQSGSSRI 399

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           L++M R +T   Y +++  +R   P + + SD I GF GET+ D + T+ LV ++GY  A
Sbjct: 400 LEAMRRGYTREAYLELVHHVRDSLPGVTLGSDIIAGFCGETEADHQQTVSLVQEVGYRTA 459

Query: 363 FSFKYSPRLGTPGSNML-EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKH 421
           F F YS R  T   + L + V  +VK  R+  L    RE     N A VGQ+  VL+E  
Sbjct: 460 FIFAYSERQKTRAFHRLKDDVPLDVKRRRVKELTDVFREGASKANAAAVGQMQVVLVEGP 519

Query: 422 GKEKG-KLVGRSPWLQSVVL------------NSKNHNIGDIIKVRITDVKISTLYG 465
            K    +L GR+     V+             ++ +   GD + V+I+     TL G
Sbjct: 520 SKRSALELSGRNDGNIKVIFPDVKMDDGTGSGSTVHAQPGDYVLVKISSANSQTLKG 576


>gi|255560986|ref|XP_002521505.1| radical sam protein, putative [Ricinus communis]
 gi|223539183|gb|EEF40776.1| radical sam protein, putative [Ricinus communis]
          Length = 535

 Score =  256 bits (653), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 176/515 (34%), Positives = 265/515 (51%), Gaps = 52/515 (10%)

Query: 1   MGLFIKLIGVAHMVSQIVDQCI-VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGY-ERVNS 58
           M  F+ L   A  +   +D  I V  R + ++YGCQMN+ D   +  +    GY E V+ 
Sbjct: 1   MFSFVLLSRTAQALEVPLDTEIPVRGRIYHETYGCQMNINDMEIVLSIMKDAGYREVVDV 60

Query: 59  MDDADLIVLNTCHIREKAAEKVYS------FLGR--IRNLKNSRIKEGGDLLVVVAGCVA 110
            + A++I +NTC IR+ A +KV+       FL R    N+   R +      VVV GC+A
Sbjct: 61  PESAEIIFINTCAIRDNAEQKVWQRLNYFWFLKRHWKSNVTIGRSQSLSPPKVVVLGCMA 120

Query: 111 QAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGY 170
           +   ++IL    +V+VV GP  Y  LP LLE   +G++ ++T  S+E+ +  +  V    
Sbjct: 121 ERLKDKILDADKMVDVVCGPDAYRDLPRLLEEVDYGQKGINTLLSLEETYADICPVRIS- 179

Query: 171 NRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQ 230
             K  +TAF+++  GC+  C+FC+VP+TRG E SR +  +V E  +L   GV E+TLLGQ
Sbjct: 180 --KNSITAFVSVMRGCNNMCSFCIVPFTRGRERSRPVDSIVKEVAELWKEGVKEVTLLGQ 237

Query: 231 NVNAWR-GKGLDGE---------------KCT-------FSDLLYSLSEIKGLVRLRYTT 267
           NVN++    G++ E                C        FSDLL  LS     +R RYT+
Sbjct: 238 NVNSYNDASGVENEVEPGSNWKLSEGFSSMCKVKKMGLRFSDLLDRLSTEFPEMRFRYTS 297

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
            HP+D  D L+    D   +   +HLP QSGS  +L+ M R +T   Y  ++ +IR + P
Sbjct: 298 PHPKDFPDDLLYVMRDKYNICKSIHLPAQSGSSTVLERMRRGYTREAYLDLVQKIRRIMP 357

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQVDENV 386
           D+ I+SDFI GF GET++D  +T+ LV  +GY  A+ F YS R  T    N  + V +NV
Sbjct: 358 DVGITSDFICGFCGETEEDHESTLSLVRTVGYDMAYMFAYSMREKTHAHRNYNDDVPDNV 417

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRS------------ 432
           K  RL  L +  R       D+ +G I  VL+E   K     +L+G++            
Sbjct: 418 KQRRLTELIEAFRGSTGQCYDSQIGSIQLVLVEGPNKRAPDTELIGKTDRGHRVSFINLA 477

Query: 433 -PWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGE 466
            P      +N +N  +GD ++VRI     ++L+GE
Sbjct: 478 VPNRSEGFINKRNPVVGDYVEVRILKSTRASLFGE 512


>gi|311747597|ref|ZP_07721382.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Algoriphagus sp. PR1]
 gi|126575579|gb|EAZ79889.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Algoriphagus sp. PR1]
          Length = 492

 Score =  255 bits (652), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 157/460 (34%), Positives = 254/460 (55%), Gaps = 23/460 (5%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ +++SYGCQMN  DS  +  +    G++  +  + AD+I LNTC IREKA   V   L
Sbjct: 33  RKLYIESYGCQMNFSDSEIVASIMKENGFDTTSDFNQADVIFLNTCSIREKAELTVRKRL 92

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
                 K ++     ++ + V GC+A+   +++L    IV+VVVGP  Y  LP L+  A 
Sbjct: 93  TDFNKAKRNK----PEMTIGVLGCMAERLKDKLLEEEKIVDVVVGPDAYRDLPNLVSSAE 148

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G + V+T  S E+ +  ++ V    N   GVTAF++I  GCD  C+FCVVP+TRG E S
Sbjct: 149 DGNKGVNTFLSREETYADIAPVRLNSN---GVTAFISIMRGCDNMCSFCVVPFTRGRERS 205

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC-------------TFSDLL 251
           R    +V EA+ L   G  E+TLLGQNV++++    +  K               F++LL
Sbjct: 206 RDPHSIVAEAQDLYAKGYKEVTLLGQNVDSYKWSPEENNKARLNKKEEAVSSVINFANLL 265

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
             ++++   +R+R++TSHP+D++D ++      D +  Y+HLPVQSG+ R+L  MNR + 
Sbjct: 266 EMVAQVSPTLRVRFSTSHPKDITDEVLYTMKKYDNICKYIHLPVQSGNSRVLDLMNRTYD 325

Query: 312 AYEYRQIIDRIRSVRPD-IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370
              Y   ++ IR++  D   ISSD I GF  ET+++ + T+ L+D + Y  ++ F YS R
Sbjct: 326 REWYLNRVESIRNILGDECGISSDMIAGFCSETEEEHQDTLTLMDIVKYDFSYMFFYSER 385

Query: 371 LGTPGSNMLE-QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-L 428
            GT  +   E  +   VK  RL  +  K  +     N   +G+   +LIE   K+  +  
Sbjct: 386 PGTLAAKKYEDDIPLEVKKRRLAEIISKQSKLSHERNKLDIGKEQVILIEGISKKSDQEY 445

Query: 429 VGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            GR+   + V++ S ++ IGD + V+I D   +TL+G+++
Sbjct: 446 RGRNSANKVVIIPSGDYGIGDYVLVKIKDCTPATLFGDIL 485


>gi|323449468|gb|EGB05356.1| hypothetical protein AURANDRAFT_31065 [Aureococcus anophagefferens]
          Length = 540

 Score =  255 bits (652), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 171/483 (35%), Positives = 250/483 (51%), Gaps = 53/483 (10%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           FF+++ GCQMNV DS  +  +    GY    S   AD+++LNTC IR+KA  KV++   R
Sbjct: 39  FFIETRGCQMNVSDSEVVRSLLLDGGYGEATSAAAADVVLLNTCAIRDKAEAKVWT---R 95

Query: 87  IRNLKNSRIKEGGDL--------LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPE 138
           +R+L+  R   G  L         V V GC+A+   EE L  + + +VVVGP  Y  LP 
Sbjct: 96  LRDLRG-RAPHGVKLAAHRRPRQTVAVLGCMAE-RVEEGLFENGLADVVVGPDAYRELPR 153

Query: 139 LLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
           LL     G ++ DT  S+ + +  +         + G  AF+++Q GC+  C +C+VPYT
Sbjct: 154 LLGNVGSGPQM-DTKLSLVEDYGEVFPTRADPTMRHG--AFVSVQRGCNNACAYCIVPYT 210

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVN---------AW-------------- 235
           RG E SR+++ V+DE   L D GV EITLLGQNVN         AW              
Sbjct: 211 RGRERSRAVTTVLDEVAALYDAGVREITLLGQNVNSYHDAKTASAWGLPREYSDGFVPFV 270

Query: 236 RGKGLDG--EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHL 293
           +    DG  +   F++LL +++E     R+R+T+ HP+D  D L++A  D   +   LHL
Sbjct: 271 KSAKRDGMADGVRFAELLVAVAEAAPDARIRFTSPHPKDFPDALLRAVADTPNVAKQLHL 330

Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
           P QSGSD +L+SM R +T   YR ++DR R   P +A+SSDFI GF GE++ D  AT+ L
Sbjct: 331 PAQSGSDAVLRSMRRGYTDDAYRALVDRARQTIPGVALSSDFIAGFCGESEADHDATVAL 390

Query: 354 VDKIGYAQAFSFKYSPRLGTPGSNML-EQVDENVKAERLLCLQKKLREQQVSFNDACVGQ 412
           ++ I Y  AF F YS R  TP    L + V  +VK  RL  +    R  +   +   VG+
Sbjct: 391 IEDIRYDMAFLFAYSSRDRTPAQRRLDDDVPADVKNRRLNEIIAAFRAGRDELSHEAVGE 450

Query: 413 IIEVLIE------KHGKEKGKLVGRSPWLQSVVL-----NSKNHNIGDIIKVRITDVKIS 461
              VL+E        G +   + GR+   + +V      +      GD   V +  V+ +
Sbjct: 451 THLVLVEGAPKRAPAGADGTFVTGRNDGYRKIVFPDALPDGTALAEGDFCHVYVDRVEGA 510

Query: 462 TLY 464
           TL+
Sbjct: 511 TLF 513


>gi|227538855|ref|ZP_03968904.1| 2-methylthioadenine synthetase [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227241364|gb|EEI91379.1| 2-methylthioadenine synthetase [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 478

 Score =  255 bits (652), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 153/453 (33%), Positives = 254/453 (56%), Gaps = 16/453 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ +++SYGCQMN  DS  +  +   +G+E     ++AD++ +NTC IRE A  +V +  
Sbjct: 32  RKLYIESYGCQMNFSDSEIVASILMDKGFETTKDFNEADVVFINTCSIRENAETRVRN-- 89

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R++  + ++ K  G ++V V GC+A+    + L    +V+VVVGP  Y  LP L+E+  
Sbjct: 90  -RLKEFEFAKSKNPG-MIVGVLGCMAERLKSKFLEEEKLVDVVVGPDAYRDLPNLIEQVD 147

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G + V+   S E+ +  ++ V    N   G+TAF++I  GCD  C+FCVVP+TRG E S
Sbjct: 148 DGAKAVNVLLSREETYADINPVRLNTN---GITAFISIMRGCDNMCSFCVVPFTRGRERS 204

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG------LDGEKCTFSDLLYSLSEIK 258
           R +  ++ EA+ L + G  E+TLLGQNV++++            E   F+ LL  ++++ 
Sbjct: 205 RDVDSIIKEAQDLFNAGYREVTLLGQNVDSYKFTAPVAEGESPAEPVNFAQLLAKVADVS 264

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
            L+R+R++TSHP+D++D ++      + +  Y+HLPVQSG+ R+L+ MNR +    Y   
Sbjct: 265 PLLRVRFSTSHPKDITDEVLHTMARYENICNYIHLPVQSGNSRVLELMNRTYDRAWYIDR 324

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           +D IR + P+  IS+D I GF  ET+++ + T+ ++D + Y  A+ F YS R GT  +  
Sbjct: 325 VDAIRRILPECGISTDVITGFCTETEEEHQETLSMMDYVKYDYAYMFAYSERPGTLAAKR 384

Query: 379 LE-QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQ 436
            E  + E +K  RL  +  K R          VG++ ++LIE + K   +   GR+    
Sbjct: 385 YEDDIPEEIKKRRLTEVVAKQRLHSHYRIQNFVGKVHKILIEGYSKRSDQDFAGRNDQNA 444

Query: 437 SVVLNSKN-HNIGDIIKVRITDVKISTLYGELV 468
            VV    N + +GD + V       +TL G +V
Sbjct: 445 MVVFPVDNRYKVGDYVNVIGESCTSATLLGRIV 477


>gi|332248854|ref|XP_003273580.1| PREDICTED: CDK5 regulatory subunit-associated protein 1 isoform 1
           [Nomascus leucogenys]
          Length = 623

 Score =  255 bits (652), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 155/479 (32%), Positives = 261/479 (54%), Gaps = 38/479 (7%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ ++++YGCQMNV D+     +    GY R +++ +AD+I+L TC IREKA + +++ L
Sbjct: 136 RKVYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCSIREKAEQTIWNRL 195

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            +++ LK  R +    L + + GC+A+   EEIL R  +V+++ GP  Y  LP+LL  A 
Sbjct: 196 HQLKALKTRRPRSRVPLKIGILGCMAERLKEEILNREKMVDILAGPDAYRDLPQLLAVAE 255

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G++  +   S+++ +  +  V    +     +AF++I  GCD  C++C+VP+TRG E S
Sbjct: 256 SGQQAANVLLSLDETYADVMPVQTSPS---ATSAFVSIMRGCDNMCSYCIVPFTRGRERS 312

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWR---------------GKGLDGEKCT--- 246
           R ++ +++E +KL + G+ E+TLLGQNVN++R                +G      T   
Sbjct: 313 RPIASILEEVKKLSEQGLKEVTLLGQNVNSFRDNSEVQFNNAVPTNLSRGFTTNYKTKQG 372

Query: 247 ---FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
              F+ LL  +S +   +R+R+T+ HP+D  D +++   + D +   +HLP QSGS R+L
Sbjct: 373 GLRFAHLLDQVSRVDPEMRIRFTSPHPKDFPDEVLQLIHERDNICKQIHLPAQSGSSRVL 432

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           ++M R ++   Y +++  IR   P +++SSDFI GF GET++D   T+ L+ ++ Y   F
Sbjct: 433 EAMWRGYSREAYVELVHHIRESIPGVSLSSDFIAGFCGETEEDHVQTVSLLREVQYNIGF 492

Query: 364 SFKYSPRLGTPGSNML-EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422
            F YS R  T   + L + V E VK  RL  L    RE+    N   VG    VL+E   
Sbjct: 493 LFAYSMRQKTRAYHRLKDDVPEEVKLRRLEELITVFREEATKANQTSVGCTQLVLVEGLS 552

Query: 423 KEKGK-LVGRSPW-LQSVVLNSKNHNI-----------GDIIKVRITDVKISTLYGELV 468
           K     L GR+   L+ +  +++  ++           GD + V+IT     TL G ++
Sbjct: 553 KRSATDLCGRNDGNLKVIFPDAEMEDVNNPGLRVRAQPGDYVLVKITSASSQTLRGHVL 611


>gi|326430372|gb|EGD75942.1| CDK5 regulatory subunit-associated protein 1 [Salpingoeca sp. ATCC
           50818]
          Length = 632

 Score =  255 bits (652), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 154/433 (35%), Positives = 239/433 (55%), Gaps = 31/433 (7%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +R  +++YGCQMNV DS     +    G E+   +++AD+++L TC IRE A  KV++ L
Sbjct: 123 KRVLIQTYGCQMNVNDSELAWSILKEAGCEKATDVEEADIVLLVTCAIRENAETKVWTKL 182

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            ++ ++K  R K   DL + V GC+A+    +++  S  V++V GP  Y  LP +L RA 
Sbjct: 183 DQLSHIKRKRPKHK-DLQIGVLGCMAERLKHKLVEESKCVDIVAGPDAYRELPTMLSRAA 241

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G   V+   S+E+ +  L+ V    N     +AF++IQ GCD  C++C+VP+TRG E S
Sbjct: 242 AGDTQVNVLLSLEETYADLTPVRHNPN---SPSAFVSIQRGCDNMCSYCIVPFTRGRERS 298

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAW-----------------------RGKGLD 241
           R +S ++ E ++L + GV E+TLLGQNVN++                         +  D
Sbjct: 299 RPVSAILREVQQLSEQGVKEVTLLGQNVNSYLDHSQISVATAAPVVNTPGFKTIYKRKKD 358

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
           G   TF+ LL  ++++   +R+R+T+ HP+D  D ++    D   +   +HLP QSGSD 
Sbjct: 359 G--ITFAQLLEQVAQVDPEMRIRFTSPHPKDFPDEVLHVIRDHHNVCNQIHLPAQSGSDA 416

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
           +L  M R +T   Y +++DRI  + PD+ +SSDFI GF GET+ D   T+ L++ + Y  
Sbjct: 417 VLDRMRRGYTHAAYCELVDRIHDLIPDVTLSSDFISGFCGETEADHLDTLRLLEYVKYDM 476

Query: 362 AFSFKYSPRLGTPGSNMLE-QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
           A+ F YS R  T     L+  V E+VK  RL  L +   +   + N    G +  VLIE 
Sbjct: 477 AYLFAYSLREKTHAHRRLQDDVPEDVKLARLNDLIQLFHKHAKNNNAQRHGSVQTVLIES 536

Query: 421 HGK-EKGKLVGRS 432
             K  + +LVGRS
Sbjct: 537 ASKRSEDELVGRS 549


>gi|15806170|ref|NP_294874.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Deinococcus
           radiodurans R1]
 gi|81624877|sp|Q9RV79|MIAB_DEIRA RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|6458887|gb|AAF10722.1|AE001964_6 conserved hypothetical protein [Deinococcus radiodurans R1]
          Length = 505

 Score =  255 bits (652), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 158/444 (35%), Positives = 248/444 (55%), Gaps = 24/444 (5%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           +YGCQMN YD+  ++    S G + V S D+AD +++NTC +R K  +KV S LG +R  
Sbjct: 53  TYGCQMNEYDTHLVQSQLVSFGADIVESPDEADFVLVNTCAVRGKPVDKVRSLLGDLRKQ 112

Query: 91  KNSRIKEGGDLLVVVAGCVAQ-AEGEEILRRSPIVNVVVGPQTYYRLPELLE-RARFGKR 148
           K  R      L+V + GC+AQ  EG++I R+   V+V++GP +   +   LE   RF   
Sbjct: 113 KAQR-----SLVVGMMGCLAQLEEGQQIARKFE-VDVLLGPGSLLDIGAALESNERF--- 163

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
                + ++ K E    +    + K  + A LTI  GCD  CT+C+VP TRG ++SR   
Sbjct: 164 -----WGLQFKDELHDHIPPPPSGK--LQAHLTIMRGCDHHCTYCIVPTTRGPQVSRHPD 216

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAW---RGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            ++ E    +  GV E+TLLGQNVNA+   +G  L G   +F+DLL  +    G+ R+++
Sbjct: 217 DILRELDMQLAAGVREVTLLGQNVNAYGVDQGAKLKGYP-SFADLLRMVG-ASGIERVKF 274

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
           TTSHP + ++ +  A G+   +  ++HLPVQSGSDR+L+ M R +   +Y   I +I+  
Sbjct: 275 TTSHPMNFTEDVAAAIGETPAICEFVHLPVQSGSDRVLRRMAREYNREKYLTHIAQIKKH 334

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            PD+ +++D IVGFPGET++DF+ T+ L D++GY  A+ F YSPR GTP     + +   
Sbjct: 335 IPDVVLATDIIVGFPGETEEDFQDTLSLYDEVGYDSAYMFIYSPRPGTPSYKHFQDLPRE 394

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQ-SVVLNSKN 444
           +K ERL  L  + ++     N   VG + +VL+     + G L G +     +VV  +  
Sbjct: 395 LKTERLQRLIARQKDWSARKNAQKVGTVQQVLLRGDAHDAGFLEGHTRGNHPTVVPKAIG 454

Query: 445 HNIGDIIKVRITDVKISTLYGELV 468
            +   + +VRI       +YG ++
Sbjct: 455 ADGAGVYQVRIDHATPHMMYGHIL 478


>gi|26554249|ref|NP_758183.1| hypothetical protein MYPE7940 [Mycoplasma penetrans HF-2]
 gi|81747516|sp|Q8EUX4|MIAB_MYCPE RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|26454258|dbj|BAC44587.1| conserved hypothetical protein [Mycoplasma penetrans HF-2]
          Length = 491

 Score =  255 bits (651), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 152/448 (33%), Positives = 254/448 (56%), Gaps = 15/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + + +K++GCQ N+ D+  M  M    GYE    ++ +DL++LNTC +RE A  KV++ +
Sbjct: 54  KTYHIKTFGCQSNLRDTEVMMGMLELIGYEYNEDVNTSDLVLLNTCAVREHAESKVFADI 113

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G +  +K    K   + +  V GC+AQ E     IL+ +  V+ + G    +R+  LLE+
Sbjct: 114 GILDRIK----KSNPNFIFGVCGCMAQEEAVVNRILKSNFNVDFIFGTHNVHRILNLLEQ 169

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
             F K +V   +S E       I +    R   +  F+ +  GCDKFCT+C+VP TRG  
Sbjct: 170 VIFEKNLVVEVWSHEGNV----IENLPSKRTNNLKGFVNVMYGCDKFCTYCIVPMTRGKI 225

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR    ++DE  ++I  G  E+TL+GQNVN++     +GE   F++LL  +++  G+ R
Sbjct: 226 RSRRKEDILDEVHQMISEGYKEVTLIGQNVNSYGIDFDNGENYLFNNLLEDVAKT-GIER 284

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTS+P + +  ++        +MP++HLP+QSG + ILK MNR     +Y  ++D I
Sbjct: 285 VRFTTSNPWNFTRSIVDTMKKYPNIMPHIHLPIQSGDETILKKMNRPMKIGDYIDLVDYI 344

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+  P+ +I++D IVGFP ET + F  T++L  +I +  AF+F YS R GT  + + +++
Sbjct: 345 RANIPNCSITTDLIVGFPNETKEQFNKTLELYKRIEFDNAFTFIYSKRDGTVAAIIPDEI 404

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSP-WLQSVVL 440
             + K ERL  L + ++      N+  V ++++VL++    K+K  + G SP W   VV 
Sbjct: 405 PLSEKKERLQELNEMVKTFSKKNNEKYVNKVLDVLVDGPSKKDKTVISGYSPQW--KVVN 462

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
            + +   G+I+KV IT     TL G+++
Sbjct: 463 FTGSAKSGEIVKVLITSASRFTLNGKMI 490


>gi|218132529|ref|ZP_03461333.1| hypothetical protein BACPEC_00388 [Bacteroides pectinophilus ATCC
           43243]
 gi|217992639|gb|EEC58641.1| hypothetical protein BACPEC_00388 [Bacteroides pectinophilus ATCC
           43243]
          Length = 484

 Score =  254 bits (649), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 170/449 (37%), Positives = 255/449 (56%), Gaps = 28/449 (6%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           + ++GCQMN  DS ++  +    GY   +S ++AD ++ NTC +RE A  KVY  LG + 
Sbjct: 51  IATFGCQMNARDSEKLMGILEQIGYVAADS-ENADFVLYNTCTVRENANLKVYGRLGHLG 109

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
            +K S      D+++ + GC+ Q     E+I +    V+VV G    Y+L ELL  +RF 
Sbjct: 110 AVKRS----NPDMMIGMCGCMMQEPDVVEKIRKSYRFVDVVFGTHNIYKLAELL-VSRFE 164

Query: 147 KRVV------DTDYSVED-KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
              +      DTD  VE+   ER       ++ K+GV     I  GC+ FC++C+VPY R
Sbjct: 165 SEGMIIDIWKDTDKIVEELPNERR------FSFKQGVN----ITFGCNNFCSYCIVPYVR 214

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G E SR    ++ E   L+ +GV E+ LLGQNVN++ G+ L+    TF+ LL  + +I G
Sbjct: 215 GRERSREPKDIIREIESLVADGVVEVMLLGQNVNSY-GRSLET-PVTFAQLLQEIEKIDG 272

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           L R+R+ T HP+D+SD LI+   +   +  ++HLP+QSGS RILK MNR +T   Y +++
Sbjct: 273 LERIRFMTPHPKDLSDELIEVMKNSKKICNHVHLPLQSGSSRILKLMNRHYTKEHYLELV 332

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
           ++IR   PD++I++D IVGFP ET++DF  TMD+V+K  Y  A++F YS R GTP ++M 
Sbjct: 333 EKIRREIPDVSITTDIIVGFPQETEEDFLETMDVVEKAQYESAYTFIYSKRTGTPAASMD 392

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GRSPWLQSV 438
            QV E+V  +R   L +KL        D  V  I +VL+E        LV GR      V
Sbjct: 393 GQVPEDVVKDRFDRLLEKLSGISAKHIDKYVDTIQDVLVESVNDHDSSLVTGRMRNNTLV 452

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGEL 467
               ++  +G I+ V +T+ K    +GEL
Sbjct: 453 HFPGESGLVGKIVNVHLTEGKGFYYFGEL 481


>gi|146296852|ref|YP_001180623.1| RNA modification protein [Caldicellulosiruptor saccharolyticus DSM
           8903]
 gi|145410428|gb|ABP67432.1| RNA modification enzyme, MiaB family [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 434

 Score =  254 bits (649), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 150/440 (34%), Positives = 261/440 (59%), Gaps = 19/440 (4%)

Query: 33  GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92
           GC++N Y++  + + F   GYE V+   +AD+ V+NTC +   +  K    + R +    
Sbjct: 9   GCKVNQYETQAIAETFERLGYEIVDFDQEADIYVINTCTVTNVSDRKSRQAIKRAK---- 64

Query: 93  SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-ERARFGKRV-- 149
              K   D +VVV GC  Q   +E+ ++   V+++VG +   ++ E + E  +  K++  
Sbjct: 65  ---KTSPDSIVVVMGCYPQVYPQEV-QKIEGVDIIVGTRDREKIVEYVTEYLKQKKKILA 120

Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209
           V+ +Y   D FE L I    +N +    AF+ I+EGC++FC++C++PY RG  +SRSLS 
Sbjct: 121 VNNEYK-RDTFEELKI--SSFNER--TRAFIKIEEGCEQFCSYCIIPYARGSVVSRSLSS 175

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSH 269
           ++DE ++L  NG  E  + G N++A+ GK LD  K T  D++  +S+I+ + R+R ++  
Sbjct: 176 ILDEVQRLASNGYKEFVITGINISAY-GKDLDY-KVTLVDVIEEISKIEKVRRIRLSSLE 233

Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329
           P  M +  IK    ++ L  +LHL +QSGSD+ILK MNR +T  EYRQI++ +R    D+
Sbjct: 234 PIVMKEDFIKRLVKIEKLCHHLHLSLQSGSDKILKLMNRHYTTDEYRQIVEMVRGYWNDV 293

Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAE 389
           A ++D IVGFPGE+D+DF  T++ V +IG+++   F++SP+ GT   NM  QV+   K +
Sbjct: 294 AFTTDIIVGFPGESDEDFERTVEFVKEIGFSRIHVFRFSPKKGTNAYNMPYQVNSAEKEK 353

Query: 390 RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS-PWLQSVVLNSKNHNIG 448
           R   L+   R+    F+    G+I++VLIE++   +G   G S  +++++V  +++  +G
Sbjct: 354 RSEILKSVARKLSFGFHKKFEGKIVDVLIEENSSLEGYFEGYSGNYIRTLVPKTESIRVG 413

Query: 449 DIIKVRITDVKISTLYGELV 468
           +I KV++ +     + G+++
Sbjct: 414 EIYKVKVKEAFEQYVIGDII 433


>gi|312135098|ref|YP_004002436.1| RNA modification enzyme, miab family [Caldicellulosiruptor
           owensensis OL]
 gi|311775149|gb|ADQ04636.1| RNA modification enzyme, MiaB family [Caldicellulosiruptor
           owensensis OL]
          Length = 434

 Score =  254 bits (649), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 156/441 (35%), Positives = 252/441 (57%), Gaps = 21/441 (4%)

Query: 33  GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92
           GC++N Y++  + ++F   G+E V+    AD+ V+NTC +   +  K    + + + L  
Sbjct: 9   GCKVNQYETQAVAELFKESGFEIVDFDSKADVYVINTCTVTNMSDRKSRQAIKKAKKLSP 68

Query: 93  SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-ERARFGKRVVD 151
             I       VVV GC  Q    E+ +   I ++++G +   ++ + + E     K++V 
Sbjct: 69  ESI-------VVVMGCYPQVYPHEVEKIRDI-DIIIGTKDRQKIVDYVKEYLENKKKIVA 120

Query: 152 TDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
            D   +   FE L I +  +N +    AF+ I+EGCD+FC++C++PY RG   SRSL  +
Sbjct: 121 IDEGYKRGTFEELKISE--FNERS--RAFIKIEEGCDQFCSYCIIPYARGAVRSRSLESI 176

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270
            +E R+L+ NG  E  + G N++A+ GK LDG K T  D++  ++EI+G+ R+R ++  P
Sbjct: 177 EEEVRRLVSNGYKEFVITGINISAY-GKDLDG-KITLIDVIERINEIEGVKRIRLSSLEP 234

Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330
             MS+  I      D L  +LHL +QSGSD+ILK MNR +T  +Y+ I+DRI+    D+A
Sbjct: 235 LIMSEQFISRLLSFDKLCHHLHLSLQSGSDKILKFMNRHYTTAQYQDIVDRIKEKWDDVA 294

Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER 390
            ++D IVGFPGET++DF AT++ V KIG+++   F++SP+ GT   +M  QVD   K  R
Sbjct: 295 FTTDIIVGFPGETEEDFNATLEFVQKIGFSRIHVFRFSPKKGTKAYDMPNQVDSKEKERR 354

Query: 391 LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS-PWLQSVVLNSKNHNI-- 447
              +++        F+   VG+ +EVLIE+     G   G S  ++++VV   KNH I  
Sbjct: 355 SKVMKEVAANLSYQFHRKFVGKWLEVLIEQDSDFDGYYEGYSGNYIRTVV--RKNHFIVP 412

Query: 448 GDIIKVRITDVKISTLYGELV 468
           G+I KV+IT      + GE++
Sbjct: 413 GEIYKVKITQAYEQYVKGEII 433


>gi|42525235|gb|AAS18317.1| CDK5 regulatory subunit associated protein 1 transcript variant 3
           [Homo sapiens]
          Length = 574

 Score =  254 bits (649), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 149/440 (33%), Positives = 245/440 (55%), Gaps = 27/440 (6%)

Query: 17  IVDQCIVPQR-FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREK 75
           ++D+ +  QR  ++++YGCQMNV D+     +    GY R +++ +AD+I+L TC IREK
Sbjct: 91  MMDELLGRQRKVYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCSIREK 150

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135
           A + +++ L +++ LK  R +    L + + GC+A+   EEIL R  +V+++ GP  Y  
Sbjct: 151 AEQTIWNRLHQLKALKTRRPRSRVPLRIGILGCMAERLKEEILNREKMVDILAGPDAYRD 210

Query: 136 LPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
           LP LL  A  G++  +   S+++ +  +  V    +     +AF++I  GCD  C++C+V
Sbjct: 211 LPRLLAVAESGQQAANVLLSLDETYADVMPVQTSAS---ATSAFVSIMRGCDNMCSYCIV 267

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR---------------GKGL 240
           P+TRG E SR ++ +++E +KL + G+ E+TLLGQNVN++R                +G 
Sbjct: 268 PFTRGRERSRPIASILEEVKKLSEQGLKEVTLLGQNVNSFRDNSEVQFNSAVPTNLSRGF 327

Query: 241 DGEKCT------FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP 294
                T      F+ LL  +S +   +R+R+T+ HP+D  D +++   + D +   +HLP
Sbjct: 328 TTNYKTKQGGLRFAHLLDQVSRVDPEMRIRFTSPHPKDFPDEVLQLIHERDNICKQIHLP 387

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
            QSGS R+L++M R ++   Y +++  IR   P +++SSDFI GF GET++D   T+ L+
Sbjct: 388 AQSGSSRVLEAMRRGYSREAYVELVHHIRESIPGVSLSSDFIAGFCGETEEDHVQTVSLL 447

Query: 355 DKIGYAQAFSFKYSPRLGTPGSNML-EQVDENVKAERLLCLQKKLREQQVSFNDACVGQI 413
            ++ Y   F F YS R  T   + L + V E VK  RL  L    RE+    N   VG  
Sbjct: 448 REVQYNMGFLFAYSMRQKTRAYHRLKDDVPEEVKLRRLEELITIFREEATKANQTSVGCT 507

Query: 414 IEVLIEKHGKEKGK-LVGRS 432
             VL+E   K     L GR+
Sbjct: 508 QLVLVEGLSKRSATDLCGRN 527


>gi|291543948|emb|CBL17057.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Ruminococcus sp. 18P13]
          Length = 455

 Score =  254 bits (648), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 158/451 (35%), Positives = 246/451 (54%), Gaps = 28/451 (6%)

Query: 28  FVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRI 87
            V+S+GCQ+N+ D  +++ +  S GY      + ADLI+LNTC +RE A ++V+  LG++
Sbjct: 22  MVQSFGCQLNMTDGEKLKWLLLSMGYGLTEEPEQADLILLNTCAVREHAEDRVFGHLGQL 81

Query: 88  RNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           +  K  +      L++ + GC+   E   E++    P VN+VVG     RLP +L     
Sbjct: 82  KPYKQKK----PGLIIGLCGCMTAEEPVREKLKASYPYVNLVVGTGALERLPAMLLEILG 137

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           GK+     +SV+   +     +    R     A + I  GC+ FCT+C+VPY RG E SR
Sbjct: 138 GKK-----HSVDATVQSAPSEELSQVRSCSFKASVPIMYGCNNFCTYCIVPYVRGRERSR 192

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL-DGEKCTFSDLLYSLSEIKGLVRLR 264
               +  + R+L+  G  EI LLGQNVN++ GK L DG +  F +LL  L  I+G   +R
Sbjct: 193 DPKIIERQVRELVSQGCKEIFLLGQNVNSY-GKDLPDGIR--FPELLRRLDAIEGEYWIR 249

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           + +SHP+D +  LI    +   +  +LHLPVQSGSD IL +MNR +T  +Y + +   RS
Sbjct: 250 FMSSHPKDATPELIDVICNSRHVEKHLHLPVQSGSDSILHAMNRCYTVKKYLETVRYARS 309

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             PD A+++D IVGFP ETD++F AT+ L++++G+   +SF YSPR GT  + + +    
Sbjct: 310 RVPDFALTTDIIVGFPNETDEEFSATLGLLEQVGFDNVYSFIYSPRSGTKAAQIADHTPA 369

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWL-----QSVV 439
            VK  R+  L  + RE         +G+ ++VL E   + KG+     PWL     + V+
Sbjct: 370 QVKTVRMQQLLAQQRETSTRLYRRFLGRTMQVLFEGVSR-KGE-----PWLTGKSTEGVI 423

Query: 440 LNSKN--HNIGDIIKVRITDVKISTLYGELV 468
           + +K     IG    V I + K   + G ++
Sbjct: 424 VEAKGDPSRIGTFADVHIEETKNWAVLGTIL 454


>gi|332858143|ref|XP_001155512.2| PREDICTED: CDK5 regulatory subunit-associated protein 1 [Pan
           troglodytes]
          Length = 587

 Score =  254 bits (648), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 154/479 (32%), Positives = 259/479 (54%), Gaps = 38/479 (7%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ ++++YGCQMNV D+     +    GY R +++ +AD+I+L TC +REKA + +++ L
Sbjct: 100 RKVYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCSVREKAEQTIWNRL 159

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            +++ LK  R +    L + + GC+A+   EEIL R  +V+++ GP  Y  LP LL  A 
Sbjct: 160 HQLKALKTRRPRSRVPLRIGILGCMAERLKEEILNREKMVDILAGPDAYRDLPRLLAVAE 219

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G++  +   S+++ +  +  V    +     +AF++I  GCD  C++C+VP+TRG E S
Sbjct: 220 SGQQAANVLLSLDETYADVMPVQTSAS---ATSAFVSIMRGCDNMCSYCIVPFTRGRERS 276

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNA-WR--------------GKGLDGEKCT--- 246
           R ++ +++E +KL + G+ E+TLLGQNVN+ W                +G      T   
Sbjct: 277 RPIASILEEVKKLSEQGLKEVTLLGQNVNSFWDNSEVQFNNAVPTNLSRGFTTNYKTKQG 336

Query: 247 ---FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
              F+ LL  +S +   +R+R+T+ HP+D  D +++   + D +   +HLP QSGS R+L
Sbjct: 337 GLRFAHLLDQVSRVDPEMRIRFTSPHPKDFPDEVLQLIHERDNICKQIHLPAQSGSSRVL 396

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           ++M R ++   Y +++  IR   P +++SSDFI GF GET++D   T+ L+ ++ Y   F
Sbjct: 397 EAMRRGYSREAYVELVHHIRESIPGVSLSSDFIAGFCGETEEDHVQTVSLLREVQYNMGF 456

Query: 364 SFKYSPRLGTPGSNML-EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422
            F YS R  T   + L + V E VK  RL  L    RE+    N   VG    VL+E   
Sbjct: 457 LFAYSMRQKTRAYHRLKDDVPEEVKLRRLEELITIFREEATKANQTSVGCTQLVLVEGLS 516

Query: 423 KEKGK-LVGRSPW-LQSVVLNSKNHNI-----------GDIIKVRITDVKISTLYGELV 468
           K     L GR+   L+ +  +++  ++           GD + V+IT     TL G ++
Sbjct: 517 KRSATDLCGRNDGNLKVIFPDAEMEDVNNPGLRVRAQPGDYVLVKITSASSQTLRGHVL 575


>gi|195107983|ref|XP_001998572.1| GI23564 [Drosophila mojavensis]
 gi|193915166|gb|EDW14033.1| GI23564 [Drosophila mojavensis]
          Length = 588

 Score =  254 bits (648), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 155/476 (32%), Positives = 248/476 (52%), Gaps = 38/476 (7%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +R   + YGCQMN  D+  +  +    GY+R   + ++D+++L TC +RE A +K+++ L
Sbjct: 101 RRVHFEVYGCQMNTNDTEVVWSILKEHGYQRSEDVANSDVVMLVTCAVREGAEQKIWNRL 160

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             +R LK  R  +   L + + GC+A+   E++L +   V+V+ GP +Y  LP LL  AR
Sbjct: 161 RHLRALKEKRGSKRAPLQLTILGCMAERLKEKLLEQEQCVDVIAGPDSYKDLPRLLAVAR 220

Query: 145 -FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            +G   ++   S+++ +  +  V          TAF++I  GCD  CT+C+VP+TRG E 
Sbjct: 221 HYGNSAINVLLSLDETYADVMPVRLN---SHSPTAFVSIMRGCDNMCTYCIVPFTRGRER 277

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK------------------- 244
           SR L  +V E R L + GV E+TLLGQNVN++R +  +                      
Sbjct: 278 SRPLDSIVHEVRTLQEQGVKEVTLLGQNVNSYRDRTSENSTKAAGNTAPGFSTVYKPKTG 337

Query: 245 -CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
              FS LL S++E    +R+R+T+ HP+D SD +++   D   +   LHLP QSG+  +L
Sbjct: 338 GLPFSVLLQSVAEAVPEMRIRFTSPHPKDFSDEVLRVIRDYPNVCKQLHLPAQSGNSAVL 397

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
             M R +T   Y Q+++ IR + P++ +SSDFI GF GET+ +F  T+ L++ + Y  AF
Sbjct: 398 ARMRRGYTREAYLQLVEHIRQILPNVGLSSDFICGFCGETEAEFEDTISLIEIVQYNVAF 457

Query: 364 SFKYSPRLGTPGSNM-LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KH 421
            F YS R  T      ++ V   VK +RL  + +  RE     +    GQ   +LIE K 
Sbjct: 458 LFAYSMREKTTAHRRCVDDVPTAVKTDRLKRMVQAFREGATKLHKRFEGQEQLILIEGKS 517

Query: 422 GKEKGKLVGRSPWLQSVVL------------NSKNHNIGDIIKVRITDVKISTLYG 465
            +      GR+     V++            ++K+ N+GD +  RI +     L G
Sbjct: 518 KRSDSHWFGRNDANIKVIVPAAALRTANANESAKDINVGDFVVARIVESNSQVLKG 573


>gi|26353536|dbj|BAC40398.1| unnamed protein product [Mus musculus]
          Length = 588

 Score =  254 bits (648), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 157/479 (32%), Positives = 255/479 (53%), Gaps = 38/479 (7%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ ++++YGCQMNV D+     +    GY R +++ +AD+I+L TC IREKA + +++ L
Sbjct: 99  RKVYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCSIREKAEQTIWNRL 158

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            +++ LK  R +    L + + GC+A+    EIL R  +V+++ GP  Y  LP LL    
Sbjct: 159 HQLKVLKTKRPRSRVPLRIGILGCMAERLKGEILNREKMVDLLAGPDAYRDLPRLLAVVE 218

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G++  +   S+++ +  +  V    +     +AF++I  GCD  C++C+VP+TRG E S
Sbjct: 219 SGQQAANVLLSLDETYADIMPVQTSPS---ATSAFVSIMRGCDNMCSYCIVPFTRGRERS 275

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWR---------------GKGLDGE------ 243
           R ++ ++DE RKL + G+ E+TLLGQNVN++R                +G          
Sbjct: 276 RPVASILDEVRKLSEQGLKEVTLLGQNVNSFRDNSEVQFNNAGSANLSRGFTTNYKPKQG 335

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
              FS LL  +S I   +R+R+T+ HP+D  D +++   +   +   +HLP QSGS R+L
Sbjct: 336 GLRFSHLLDQVSRIDPEMRIRFTSPHPKDFPDEVLQLIRERHNICKQIHLPAQSGSSRVL 395

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
            +M R ++   Y  ++  +R   P +++SSDFI GF GET+DD R T+ L+ ++ Y   F
Sbjct: 396 DAMRRGYSREAYVALVHHVRETIPGVSLSSDFITGFCGETEDDHRQTVSLLREVQYNTGF 455

Query: 364 SFKYSPRLGTPGSNML-EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422
            F YS R  T   + L + V E VK  RL  L    RE+    N   VG    VL+E   
Sbjct: 456 LFAYSMRQKTRAYHRLKDDVPEEVKLRRLEELITVFREEASKANKTSVGYSQLVLVEGFS 515

Query: 423 KEKGK-LVGRSPW-LQSVVLNSKNHNI-----------GDIIKVRITDVKISTLYGELV 468
           K     L GR+   L+ +  +++  +I           GD + V+IT     TL G ++
Sbjct: 516 KRSTTDLCGRNDANLKVIFPDAEVEDITNPGLKVRAQPGDYVLVKITSASSQTLKGHIL 574


>gi|313674871|ref|YP_004052867.1| tRNA-i(6)a37 thiotransferase enzyme miab [Marivirga tractuosa DSM
           4126]
 gi|312941569|gb|ADR20759.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Marivirga tractuosa DSM
           4126]
          Length = 488

 Score =  253 bits (647), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 155/461 (33%), Positives = 252/461 (54%), Gaps = 24/461 (5%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ +++SYGCQMN  DS  +  +    G++  N  ++AD+I LNTC IREKA   V   L
Sbjct: 35  RKLYIESYGCQMNFSDSEIVTSIMKENGFDTTNDFNNADVIFLNTCSIREKAELTVRKRL 94

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
                +K  +     ++ + V GC+A+    ++L    IV++V GP +Y  LP L++   
Sbjct: 95  TDFNKVKARK----PEMQIGVLGCMAERLKTKLLEEEKIVDIVAGPDSYRDLPNLVKTVD 150

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G++ V+T  S E+ +  +S V    N   GVTAF++I  GCD  C+FCVVP+TRG E S
Sbjct: 151 DGEKAVNTFLSREETYADISPVRLNSN---GVTAFISIMRGCDNMCSFCVVPFTRGRERS 207

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC--------------TFSDL 250
           R    +V EA+ L D G  E+TLLGQNV++++       K                F++L
Sbjct: 208 RDPFSIVQEAQDLFDKGYREVTLLGQNVDSYKWSEEINNKARLEKIEKKEEVEVINFANL 267

Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
           +  ++ +   +R+R++TSHP+D++D ++      + +  Y+HLP QSG+ RILK MNR +
Sbjct: 268 IEMVANVSPDLRVRFSTSHPKDITDEVLHTMKKYENICKYIHLPAQSGNSRILKMMNRTY 327

Query: 311 TAYEYRQIIDRIRSVR-PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369
               Y   +D IR++   +  ISSD I GF  ET+++ + T+ L+D + Y  ++ F YS 
Sbjct: 328 DRDWYINRVDAIRNILGEECGISSDMIAGFCSETEEEHQDTLTLMDYVKYDFSYMFFYSE 387

Query: 370 RLGTPGSNMLE-QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGK 427
           R GT      E  +    K +RL  +  K RE  +  N   + ++ +VL+E   K  + +
Sbjct: 388 RPGTLAEKRYEDDIPLETKKKRLQEIINKQREYSLERNQLDLNKVHKVLVEGTSKRSEEQ 447

Query: 428 LVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           L GR+   + V+   +N+  GD + V + +   +TL G+ V
Sbjct: 448 LQGRNTANKVVIFPKENYKKGDYVDVFVEECTGATLIGKAV 488


>gi|224078161|ref|XP_002192492.1| PREDICTED: CDK5 regulatory subunit associated protein 1
           [Taeniopygia guttata]
          Length = 593

 Score =  253 bits (647), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 164/480 (34%), Positives = 251/480 (52%), Gaps = 38/480 (7%)

Query: 21  CIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKV 80
           C V    ++++YGCQMNV D+  +  +    GY R   +++AD+++L TC +REKA   V
Sbjct: 102 CRVKGSLYLETYGCQMNVSDTEIVWAILQKNGYARTKELEEADVVLLVTCSVREKAEHAV 161

Query: 81  YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140
           ++ L  +R LK  R +    L V + GC+A+   EEIL +  +V+VV GP  Y  LP LL
Sbjct: 162 WNRLRHLRALKARRPRARAPLRVGILGCMAERLKEEILHKEKLVDVVAGPDAYRDLPRLL 221

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
             A  G++  +   S+++ +  +  V        G TAF++I  GCD  C++C+VP+TRG
Sbjct: 222 AVAESGQQAANVLLSLDETYADILPVQTSAG---GTTAFVSIMRGCDNMCSYCIVPFTRG 278

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR-----------GKGLDGEKCT--- 246
            E SR ++ ++ E R L D GV E+TLLGQNVN++R             GL     T   
Sbjct: 279 RERSRPIASILQEVRMLSDQGVKEVTLLGQNVNSFRDLSEVQFQSVTAPGLSRGFRTVYK 338

Query: 247 -------FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
                  FS LL  +S I   +R+R+T+ HP+D  D +++   +   +  +LHLP QSGS
Sbjct: 339 AKQGGLRFSHLLDQVSRIDPEMRIRFTSPHPKDFPDEVLQLIQERHNICKHLHLPAQSGS 398

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
            R+L++M R +T   Y +++  +R   P +++SSDFI GF GET++D   T+ L+ ++ Y
Sbjct: 399 TRVLEAMRRGYTREAYLELVHHVRDSIPGVSLSSDFIAGFCGETEEDHLQTVSLLREVRY 458

Query: 360 AQAFSFKYSPRLGTPGSNMLE-QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI 418
              F F YS R  T   + L+  V  +VK +RL  L    RE+    N   VG+   VL+
Sbjct: 459 NVGFLFAYSMRQKTRAHHRLQDDVPADVKKQRLEQLIATFREEAARANAELVGRAQLVLV 518

Query: 419 EKHGKEKG-KLVGRSPWLQSVVLNSKN------------HNIGDIIKVRITDVKISTLYG 465
           E   K    +L GR+     V+                    GD + V++T     TL G
Sbjct: 519 EGPSKRSASELCGRNDGNIKVIFPDTELEDAAERKAPGRAQPGDYVMVKVTSASSQTLRG 578


>gi|205355334|ref|ZP_03222105.1| hypothetical protein Cj8421_0457 [Campylobacter jejuni subsp.
           jejuni CG8421]
 gi|205346568|gb|EDZ33200.1| hypothetical protein Cj8421_0457 [Campylobacter jejuni subsp.
           jejuni CG8421]
          Length = 419

 Score =  253 bits (647), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 157/436 (36%), Positives = 238/436 (54%), Gaps = 20/436 (4%)

Query: 36  MNVYDSLRM-EDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSR 94
           MNV DS  M  ++   + Y     + +ADLI++NTC +REK   K++S +G    +K   
Sbjct: 1   MNVRDSEHMIAELTQKENYALTEDIKEADLILINTCSVREKPVHKLFSEVGGFEKVK--- 57

Query: 95  IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDY 154
            KEG    + V GC A   G EI +R+P V+ V+G +   ++ + ++  +F    VD DY
Sbjct: 58  -KEGAK--IGVCGCTASHLGNEIFKRAPYVDFVLGARNISKITQAIKTPKFMG--VDIDY 112

Query: 155 SVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEA 214
             E +F      +  Y       +++ I  GCDK CT+C+VP+TRG EIS   + +  EA
Sbjct: 113 D-ESEFAFADFRNSIYK------SYINISIGCDKHCTYCIVPHTRGDEISIPFNIIYKEA 165

Query: 215 RKLIDNGVCEITLLGQNVNAWRGKGLDGE--KCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
           +K ++ G  EI LLGQNVN + GK    E  K  FSDLL  LS I+ L R+R+T+ HP  
Sbjct: 166 QKAVEKGAKEIFLLGQNVNNY-GKRFRNEHKKMDFSDLLEELSTIEDLERIRFTSPHPLH 224

Query: 273 MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAIS 332
           M D  ++   +   +   +H+P+QSGS  ILK+M R +T   Y     ++R + P+++IS
Sbjct: 225 MDDKFLEVFANNPKVCKSMHMPLQSGSSEILKAMKRGYTKEWYLNRALKLRELCPNVSIS 284

Query: 333 SDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLL 392
           +D IV FPGE++ DF  TMD+++K+ + Q FSFKYS R  T  + M  Q+DE   + RL 
Sbjct: 285 TDIIVAFPGESEKDFEETMDVLEKVRFEQIFSFKYSKRPLTKAATMPNQIDEETASRRLS 344

Query: 393 CLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIK 452
            LQ +  E           +  +VL E+  +    + GR+     V +      +G   +
Sbjct: 345 TLQNRHSEILDEIVKKQENKTFKVLFEEL-RAGNSIAGRTDNNFLVQVEGSEELLGQFKE 403

Query: 453 VRITDVKISTLYGELV 468
           V+IT+ K   LYGE+V
Sbjct: 404 VKITNAKRMVLYGEVV 419


>gi|302670851|ref|YP_003830811.1| tRNA-thiotransferase enzyme MiaB [Butyrivibrio proteoclasticus
           B316]
 gi|302395324|gb|ADL34229.1| tRNA-thiotransferase enzyme MiaB [Butyrivibrio proteoclasticus
           B316]
          Length = 484

 Score =  253 bits (646), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 157/446 (35%), Positives = 243/446 (54%), Gaps = 16/446 (3%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V ++GCQMN  DS ++  +    GYE   S ++AD ++ NTC +R+ A ++VY  LG   
Sbjct: 49  VVTFGCQMNARDSEKLLAILRLVGYEESES-ENADFVIYNTCTVRDNADQRVYGRLGACS 107

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           N K    K+   + + + GC+ Q +   E+I +    V+++ G    Y+  ELL      
Sbjct: 108 NFK----KKNPHMKIALCGCMMQEQTVIEKIKKSYRFVDLIFGTHNIYKFAELLCTCLES 163

Query: 147 KRVVDTDYSVEDKF-ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            R++   +   DK  E L ++     RK    + + I  GC+ FCT+C+VPY RG E SR
Sbjct: 164 DRMIIDIWKETDKIVEDLPVL-----RKYPFKSGVNIMFGCNNFCTYCIVPYVRGRERSR 218

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAW--RGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           S   +V E  KL+ +GV E+ LLGQNVN++    K  D  K +F +LL  + +++GL R+
Sbjct: 219 SPRDIVRECEKLVADGVKEVMLLGQNVNSYGLDFKDDDPNKISFPELLEEVCKVEGLERI 278

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+ T HP+D SD L+        +  ++HLP+QSGS  IL+ MNR++T   Y  ++D+IR
Sbjct: 279 RFMTPHPKDFSDELLDVIERNPKIARHIHLPLQSGSTEILRRMNRKYTKDSYLALVDKIR 338

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           +  PD+AI++D IVGFPGET  D   T+D+V+K  +  AF+F YS R GTP +   +QV 
Sbjct: 339 TKLPDVAITTDIIVGFPGETPADVDETIDVVEKASFDNAFTFIYSKRTGTPAAGFPDQVP 398

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GRSPWLQSVVLNS 442
           E    E    L K ++E     ++   G   +VL+E   ++   LV GR      V    
Sbjct: 399 EEEVKENFDRLLKVVQETARKQSEKLTGVTEKVLVESVNEQDSSLVTGRLSNNTLVHFPG 458

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
               IG+++ V++ +       GE V
Sbjct: 459 DESLIGEMVDVKLANCHGFYFTGERV 484


>gi|115889751|ref|XP_801957.2| PREDICTED: hypothetical protein isoform 4 [Strongylocentrotus
           purpuratus]
 gi|115944930|ref|XP_001194545.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
          Length = 561

 Score =  253 bits (646), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 162/488 (33%), Positives = 254/488 (52%), Gaps = 50/488 (10%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +R + ++YGCQMNV D+     +    G+++V  +  AD+I+  TC IRE A +K+++ L
Sbjct: 52  RRVYFETYGCQMNVSDTEIAWAILEKSGFQKVEDISHADVILAVTCAIRENAEQKIWNRL 111

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
              ++LKN+R K    L + + GC+A+   +++L +S  V++V GP  Y  LP LL  A 
Sbjct: 112 KYFQSLKNNRRKGEVPLKIGLLGCMAERLKKKLLEQSKTVDIVAGPDAYRDLPRLLNVAG 171

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G+  ++   S+++ +  +  V    + K   +AF++I  GCD  C++C+VP+TRG E S
Sbjct: 172 SGQTAINVMLSMDETYADVVPVRLDKDSK---SAFVSIMRGCDNMCSYCIVPFTRGRERS 228

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWR---------GKGLDGEKCT--------- 246
           R +  +VDE R L D GV E+T+LGQNVN++R             +G   +         
Sbjct: 229 RPIDSIVDEIRALSDQGVKEVTVLGQNVNSYRDVSEESYYSNSANEGSAVSEPTRLARGF 288

Query: 247 ------------FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP 294
                       F+DLL  ++ +   +R+R+T+ HP+D  D ++ A  D   +   LHLP
Sbjct: 289 KSIYKPKKGGRRFADLLERVALVDPEMRIRFTSPHPKDFPDEVLYAIRDFPNICNQLHLP 348

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
            QSGS ++L+ M R ++   Y +++D +++  P +A+SSDFI GF GET++D   TM L+
Sbjct: 349 AQSGSTKVLQLMRRGYSREAYLELVDHVQTAIPGVALSSDFIAGFCGETEEDHEDTMSLL 408

Query: 355 DKIGYAQAFSFKYSPRLGTPG-SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQI 413
             + Y  AF F YS R  T     M + V E VK  RL  +    R+     N   VG  
Sbjct: 409 RLVKYNYAFLFAYSMRQKTHAYHKMQDDVPEEVKQRRLREMITVCRDGMAEINATHVGAK 468

Query: 414 IEVLIEKHGKEKGK-LVGRSPWLQSVVL---------------NSKNHNIGDIIKVRITD 457
             VL+E   K   K LVGR+     VV+               N+++   GD I V IT+
Sbjct: 469 QLVLLEGTSKRSEKDLVGRNDANTRVVIPNTPIPACNGHHHGNNNQSMKPGDYIAVEITE 528

Query: 458 VKISTLYG 465
                L G
Sbjct: 529 SNSQVLKG 536


>gi|328948379|ref|YP_004365716.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Treponema succinifaciens
           DSM 2489]
 gi|328448703|gb|AEB14419.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Treponema succinifaciens
           DSM 2489]
          Length = 460

 Score =  253 bits (646), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 149/473 (31%), Positives = 254/473 (53%), Gaps = 47/473 (9%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           +F ++YGC+MN+ +S  +E +  S+G+++  +   ADL+V+NTC +R  A E+++  LG 
Sbjct: 3   YFFETYGCEMNIAESASVEQILISRGWKKAENAQLADLVVINTCSVRGSAEERIFGRLGF 62

Query: 87  IRNLKNSR-----------------IKEGG--DLLVVVAGCVAQAEGEEILRRSPIVNVV 127
              LK  R                 +++ G   L ++V GC+A+   + + ++ P V+ V
Sbjct: 63  FSGLKKVRSCAPDAKKRNMEIAAEYVQKNGAVPLTLIVMGCMAERLLKSLQKQWPCVDYV 122

Query: 128 VGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCD 187
           VG     +  E+++    G++ + TD      F   S  +G +      + F+ I  GC+
Sbjct: 123 VGTFAKNKFGEIIQAVEEGQKYIQTDEEPVYVFAETSYEEGAF------STFVPIMHGCN 176

Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTF 247
            FC++C+VPY RG E+SR + Q++ E   L   GV EITLLGQNVN++  KG DG    F
Sbjct: 177 NFCSYCIVPYVRGREVSRPVEQILHELDVLARRGVKEITLLGQNVNSY--KGADG--MNF 232

Query: 248 SDLLYS----LSEIKGLVR-LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
            +LL +    L +    +  +R+ +S+P+D SD LI    +   +   LH+ VQ GS+ I
Sbjct: 233 PNLLKTICRHLEQTNSPIEWIRFESSNPKDFSDELIDVIAEEKRICRGLHIAVQHGSNSI 292

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           LK+MNR++T  +Y  ++ ++R   P+I +++D ++GFPGET++DF     L+ ++ +  A
Sbjct: 293 LKAMNRKYTREQYLLLVQKLRERIPEIQLTTDIMLGFPGETEEDFEQAASLMKEVEFESA 352

Query: 363 FSFKYSPRLGTPGSNMLEQVDENVKAERL-------LCLQKKLREQQVSFNDACVGQIIE 415
           F + Y+PR GTP + M  Q+   VK ERL       L + +K+ E+QV  N   +  II 
Sbjct: 353 FMYYYNPREGTPAAKMQNQIPLEVKKERLQKIIDIQLGITRKVMEKQVGKNIKVLADII- 411

Query: 416 VLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
                      +L+G++   + +   +    IG  ++V I  +  +T  G LV
Sbjct: 412 -----SRDNANELLGKTEQNERIAFEAPVSLIGKFVQVHIDSLNGNTFKGSLV 459


>gi|218458623|ref|ZP_03498714.1| putative 2-methylthioadenine synthetase (miaB-like) protein
           [Rhizobium etli Kim 5]
          Length = 204

 Score =  253 bits (646), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 125/198 (63%), Positives = 155/198 (78%)

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
           HPRDM D LI+AH DL  LMPYLHLPVQSGSDRILK+MNRRHTA EY  +I+RIR+VRPD
Sbjct: 1   HPRDMDDRLIEAHRDLRALMPYLHLPVQSGSDRILKAMNRRHTAAEYLSLIERIRTVRPD 60

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           IA+S DFI GFPGETD+DF  T++LV  + YAQAFSFKYS R GTPG+ M +QV E +KA
Sbjct: 61  IALSGDFITGFPGETDEDFEDTLELVKTVRYAQAFSFKYSTRPGTPGAEMKDQVPEEIKA 120

Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIG 448
           ERL  LQ  L +QQ  F ++ +G+ I++L+EK G+  G+L+GRSPWLQSV +++K   IG
Sbjct: 121 ERLERLQALLLKQQQEFAESRIGKEIDLLLEKPGRMPGQLIGRSPWLQSVNVDAKASQIG 180

Query: 449 DIIKVRITDVKISTLYGE 466
           DIIKVRIT    ++L+ E
Sbjct: 181 DIIKVRITGTGTNSLFAE 198


>gi|13385358|ref|NP_080152.1| CDK5 regulatory subunit-associated protein 1 [Mus musculus]
 gi|32129439|sp|Q8BTW8|CK5P1_MOUSE RecName: Full=CDK5 regulatory subunit-associated protein 1;
           AltName: Full=CDK5 activator-binding protein C42
 gi|12845305|dbj|BAB26700.1| unnamed protein product [Mus musculus]
 gi|19264024|gb|AAH25132.1| CDK5 regulatory subunit associated protein 1 [Mus musculus]
 gi|123228756|emb|CAM15624.1| CDK5 regulatory subunit associated protein 1 [Mus musculus]
 gi|148674120|gb|EDL06067.1| CDK5 regulatory subunit associated protein 1 [Mus musculus]
          Length = 588

 Score =  253 bits (646), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 157/479 (32%), Positives = 255/479 (53%), Gaps = 38/479 (7%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ ++++YGCQMNV D+     +    GY R +++ +AD+I+L TC IREKA + +++ L
Sbjct: 99  RKVYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCSIREKAEQTIWNRL 158

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            +++ LK  R +    L + + GC+A+    EIL R  +V+++ GP  Y  LP LL    
Sbjct: 159 HQLKVLKTKRPRSRVPLRIGILGCMAERLKGEILNREKMVDLLAGPDAYRDLPRLLAVVE 218

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G++  +   S+++ +  +  V    +     +AF++I  GCD  C++C+VP+TRG E S
Sbjct: 219 SGQQAANVLLSLDETYADIMPVQTSPS---ATSAFVSIMRGCDNMCSYCIVPFTRGRERS 275

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWR---------------GKGLDGE------ 243
           R ++ ++DE RKL + G+ E+TLLGQNVN++R                +G          
Sbjct: 276 RPVASILDEVRKLSEQGLKEVTLLGQNVNSFRDNSEVQFNNAGSANLSRGFTTNYKPKQG 335

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
              FS LL  +S I   +R+R+T+ HP+D  D +++   +   +   +HLP QSGS R+L
Sbjct: 336 GLRFSHLLDQVSRIDPEMRIRFTSPHPKDFPDEVLQLIRERHNICKQIHLPAQSGSSRVL 395

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
            +M R ++   Y  ++  +R   P +++SSDFI GF GET+DD R T+ L+ ++ Y   F
Sbjct: 396 DAMRRGYSREAYVALVHHVRETIPGVSLSSDFITGFCGETEDDHRQTVSLLREVQYNTGF 455

Query: 364 SFKYSPRLGTPGSNML-EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422
            F YS R  T   + L + V E VK  RL  L    RE+    N   VG    VL+E   
Sbjct: 456 LFAYSMRQKTRAYHRLKDDVPEEVKLRRLEELITVFREEASKANKTSVGCSQLVLVEGFS 515

Query: 423 KEKGK-LVGRSPW-LQSVVLNSKNHNI-----------GDIIKVRITDVKISTLYGELV 468
           K     L GR+   L+ +  +++  +I           GD + V+IT     TL G ++
Sbjct: 516 KRSTTDLCGRNDANLKVIFPDAEVEDITNPGLKVRAQPGDYVLVKITSASSQTLKGHIL 574


>gi|237735920|ref|ZP_04566401.1| 2-methylthioadenine synthetase [Mollicutes bacterium D7]
 gi|229381665|gb|EEO31756.1| 2-methylthioadenine synthetase [Coprobacillus sp. D7]
          Length = 428

 Score =  253 bits (646), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 155/432 (35%), Positives = 245/432 (56%), Gaps = 30/432 (6%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y+S  M  +F   GY+ V+    AD+ V+NTC +      K        R +
Sbjct: 8   TLGCKVNTYESNAMLKIFNEAGYQEVDFKQVADVYVINTCTVTNTGDSKS-------RQM 60

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR---LPELLERARFGK 147
               I++     + V GC +Q   EEI  +   V VV+G Q  YR   +  + E    G+
Sbjct: 61  IRKAIRKNPKATICVVGCYSQTAPEEI-EKIEGVGVVLGTQ--YRSDIVKYVDEHLETGE 117

Query: 148 RVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
            V+  D  +   KFE L+I     +R +   AFL IQ+GC+ FCT+C++PY RG   SR 
Sbjct: 118 MVIKVDNVMNLRKFEDLNI-----DRFKNTRAFLKIQDGCNNFCTYCIIPYARGRVRSRQ 172

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
              V+++A+KL+DNG  EI L G +   +   G D +  +F +LL  L +IKGL RLR +
Sbjct: 173 KESVLNQAQKLVDNGYVEIVLTGIHTAGY---GEDLDDYSFYELLVDLVKIKGLKRLRIS 229

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
           +     +SD +I   G  ++++ +LH+P+Q+GSD  LK MNR++T  EY + I++IRS  
Sbjct: 230 SIETSQISDEIIDLIGSNEIIVDHLHVPLQAGSDATLKRMNRKYTTAEYLEKINKIRSYL 289

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           P+IA ++D IVGFPGETD++F  T + + ++ Y++   F YSPR  TP + M +QV++ +
Sbjct: 290 PNIAFTTDVIVGFPGETDEEFEETYNFIKQVNYSELHVFPYSPRKNTPAAKMKDQVNDQI 349

Query: 387 K---AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
           K   A RLL L K+L  +   F    +G+ ++VL EK   E   L+G +     V + + 
Sbjct: 350 KHERANRLLQLSKELNHE---FALKQIGKTLKVLFEKRDGE--YLIGHAGDYLKVKVKTA 404

Query: 444 NHNIGDIIKVRI 455
           ++ IG+I+ ++I
Sbjct: 405 DNLIGEIVTIKI 416


>gi|322379427|ref|ZP_08053797.1| conserved hypothetical ATP-binding protein [Helicobacter suis HS1]
 gi|322380962|ref|ZP_08055028.1| MiaB-like protein [Helicobacter suis HS5]
 gi|321146634|gb|EFX41468.1| MiaB-like protein [Helicobacter suis HS5]
 gi|321148136|gb|EFX42666.1| conserved hypothetical ATP-binding protein [Helicobacter suis HS1]
          Length = 435

 Score =  253 bits (645), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 151/438 (34%), Positives = 248/438 (56%), Gaps = 31/438 (7%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           Q+ ++++ GC MN  DS  +       GY  V    +ADLI++NTC +REK   K++S +
Sbjct: 4   QKVYIETMGCAMNTRDSQHLIGELSKIGYVEVKEAKEADLILINTCSVREKPERKLFSEI 63

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           G+   +K    K G      V GC A   G +IL+++P V+ V+G +   ++ ++++R +
Sbjct: 64  GQFAKIKKPNAKIG------VCGCSASHMGVQILQKAPSVDFVLGARNVSKITDIIKREK 117

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGY----NRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
             +  +D D             D  Y    +    + A L I  GCDK CT+C+VP+TRG
Sbjct: 118 AVEISLDHD-------------DSTYVFNTHAPSQIKALLNISIGCDKHCTYCIVPHTRG 164

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-GLDGEKCTFSDLLYSLSEIKG 259
            EIS  +  ++ EA KL   GV EI LLGQNVN +  +  +   K  FS LL +LS+I+G
Sbjct: 165 KEISIPMDLILKEAEKLTKQGVKEILLLGQNVNNYGVRFSIKHPKVNFSALLENLSQIEG 224

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           L R+R+T+ HP  M +  ++       +   +H+P+QSGS+ ILK+M R ++   Y   I
Sbjct: 225 LKRIRFTSPHPLHMDNAFLECFARNPKVCKSIHIPLQSGSNAILKAMKRGYSKEWYLDRI 284

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            R++S+ P++ IS+D IVGFPGET  DF  T+++++++ +   +SF YS R  TP  + L
Sbjct: 285 TRLKSLVPNVGISTDIIVGFPGETQQDFEQTLEVLEQVRFDTLYSFIYSARPLTPAYH-L 343

Query: 380 EQVDENVKAERLLCLQKKLRE--QQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQS 437
           E+V EN+    L  LQ + RE  +Q + ++  VG+I +VL+E   +   +  GRS   + 
Sbjct: 344 EKVPENIAHHNLERLQSRHREILEQKARDE--VGKIHQVLVENITEPLAE--GRSDNGRL 399

Query: 438 VVLNSKNHNIGDIIKVRI 455
           +   + +  +GD+++V++
Sbjct: 400 LSFEALSARVGDLVRVQV 417


>gi|262340984|ref|YP_003283839.1| MiaB family tRNA modification enzyme: 2-methylthioadenine
           synthetase [Blattabacterium sp. (Blattella germanica)
           str. Bge]
 gi|262272321|gb|ACY40229.1| MiaB family tRNA modification enzyme: 2-methylthioadenine
           synthetase [Blattabacterium sp. (Blattella germanica)
           str. Bge]
          Length = 453

 Score =  253 bits (645), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 155/458 (33%), Positives = 263/458 (57%), Gaps = 14/458 (3%)

Query: 13  MVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHI 72
           M+ +  +Q  + Q F++++YGCQMN+ DS  +  +  + G+   N+++ AD+I+ N+C I
Sbjct: 1   MMEKNKNQKKLNQSFYIENYGCQMNLSDSEIVISILSNDGFVLSNNLEKADIILFNSCSI 60

Query: 73  REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT 132
           REKA   +   L +++ LK  +    G     V GC+++     ++    I +  V P +
Sbjct: 61  REKAELTLKKRLEQLQFLKKKKKTLFG-----VIGCLSKKIINFLIEEKKI-DFFVNPNS 114

Query: 133 YYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTF 192
           Y ++ + +  A  GK+ +  ++    K E  S +   Y  ++ VT FL+I  GCD  CTF
Sbjct: 115 YKKISDFIRYAMDGKKSLHLNH---QKNETYSDIQPFYLNQKKVTTFLSITRGCDNMCTF 171

Query: 193 CVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR-GKGLDGEKCTFSDLL 251
           C+VP+TRG E S S   ++++ + L  NG  EITLLGQNV+++R  KG       FS+LL
Sbjct: 172 CIVPFTRGRERSSSPYSIIEQCKHLYQNGYKEITLLGQNVDSYRWSKGFIT--IGFSELL 229

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
             L+     +R+R++TS+P DMSD +++       +  ++HLPVQSGS++IL+ MNR++T
Sbjct: 230 NLLALEIPSMRIRFSTSNPHDMSDKVLEIISKHPNICKHIHLPVQSGSNKILRLMNRKYT 289

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
             +Y  +++RIR++ P+ +IS D + GF  E + D + T+DL++KI Y   + F YSPR 
Sbjct: 290 REKYLSLVNRIRTIIPECSISHDIMTGFCNEEEKDHQDTIDLMNKIQYNYGYMFSYSPRP 349

Query: 372 GTPG-SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LV 429
           GT    N+ + V ++VK +RL  +    R          +G++ E+LIE   K+  +   
Sbjct: 350 GTYAYRNLQDNVPKDVKKKRLKEIIDLQRNHSSFRMKEYLGKVQEILIEGESKKNCQYWY 409

Query: 430 GRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
           GR+     VV   +++ IGD   ++IT+   +TL G++
Sbjct: 410 GRNTQNLVVVFPKQSYKIGDFTHIQITETTSATLIGKI 447


>gi|145356333|ref|XP_001422387.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144582629|gb|ABP00704.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 579

 Score =  253 bits (645), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 166/489 (33%), Positives = 256/489 (52%), Gaps = 55/489 (11%)

Query: 28  FVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRI 87
           +V++YGCQMNV DS  M  +    GY+    ++DAD+I++NTC IR+KA  K++  L   
Sbjct: 70  YVETYGCQMNVNDSEVMMAVLEGAGYDETKEVNDADVILINTCAIRDKAEAKIWQRLAYF 129

Query: 88  RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER--ARF 145
           R+L N + K     +V V GC+A+   E++L    + ++V GP  Y  LP L++      
Sbjct: 130 RSLGNGK-KRSEKPVVGVLGCMAERIKEKLLEADRLADIVAGPDAYRDLPNLIDAVVGNP 188

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGV-TAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
           G + ++   SVE+ +  +  V     R+ G  +AF+TI  GCD  C FC+VPYTRG E S
Sbjct: 189 GGKAMNVQLSVEETYADIIPV-----REAGSHSAFVTIMRGCDNACAFCIVPYTRGRERS 243

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNV-------------NAWRGKG------LDGEK- 244
           R L+ ++ E R L + GV E+TLLGQN+             +A+ G         D E+ 
Sbjct: 244 RDLASIMYEIRLLSEQGVKEVTLLGQNLANASTERLASASGSAFVGYADGFASRYDPERK 303

Query: 245 ----CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300
                 F++LL  ++ +   +R+R+T+ HP+D  D +++   D   +   LH+P QSGS 
Sbjct: 304 RAGTIQFAELLDKVASVDPEMRIRFTSPHPKDFPDDVLRVIRDRPNVSKCLHMPAQSGSS 363

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
             L+ M R +T   Y  +IDR++++ P  AI++D I GF GET+DD   T+ L+  IGY 
Sbjct: 364 ATLERMARGYTRESYFALIDRVKAMIPGCAITTDIISGFCGETEDDHEDTVSLMSAIGYE 423

Query: 361 QAFSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419
           QAF F YS R GT G  + ++ V E+VK  RL  +    R +        +G    VL+E
Sbjct: 424 QAFMFAYSEREGTAGQRHQIDDVPEDVKQRRLQEVIDAFRARAAEKQQMEIGSTHCVLVE 483

Query: 420 KHGKEKG-KLVGRSPWLQSVVLNSKNHNI-------------------GDIIKVRITDVK 459
              K+   +  G++   + VV   KN  I                   GD + VR+T   
Sbjct: 484 GPSKKNSDEWTGKTDTSKWVVFE-KNDAIGKYAGDEDAPTSGSYGVKPGDYVAVRVTGCS 542

Query: 460 ISTLYGELV 468
             TL+G+++
Sbjct: 543 TGTLFGQVL 551


>gi|148235437|ref|NP_001090499.1| CDK5 regulatory subunit associated protein 1 [Xenopus laevis]
 gi|116063382|gb|AAI23345.1| MGC154823 protein [Xenopus laevis]
          Length = 565

 Score =  252 bits (644), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 163/478 (34%), Positives = 253/478 (52%), Gaps = 41/478 (8%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + ++++YGCQMNV D+     +    GY R +   +AD+I L TC +REKA + +++ L 
Sbjct: 82  KIYLETYGCQMNVNDTEIAWSILQQNGYVRTHIETEADVIFLVTCSVREKAEQTIWNRLQ 141

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           +   LK  R K+   + + + GC+A+   +EIL R  +V++V GP  Y  LP LL  A  
Sbjct: 142 QFATLKRKRSKDN-RMRIGILGCMAERLKQEILERENLVDIVAGPDAYRDLPRLLAVAES 200

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G++V +   SV++ +  +  V    + K   +AF++I  GCD  CT+C+VP+TRG E SR
Sbjct: 201 GQQVANVLLSVDETYADIMPVHTSASSK---SAFVSIMRGCDNMCTYCIVPFTRGRERSR 257

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAW-----------------RG-----KGLDGE 243
            L  +++E R L   GV E+TLLGQNVN++                 RG     K   G 
Sbjct: 258 PLHSIIEEVRMLSSQGVKEVTLLGQNVNSYCDSSSVQFPNVGSPSLSRGFSTIYKHKKG- 316

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
              F DLL  +S+I   +R+R+T+ HP+D  D +++   +   +   +H+P QSGS+R+L
Sbjct: 317 GLRFVDLLDKVSQIDPEMRIRFTSPHPKDFPDEVLQLIAERHNICKQIHIPAQSGSNRVL 376

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           +SM R ++   Y  +I  IR   P +++SSDFI GF  ET++D + T+ L+ ++ Y  A+
Sbjct: 377 ESMRRGYSREAYLDLIQNIRESIPGVSLSSDFITGFCQETEEDHQQTLSLLREVSYNAAY 436

Query: 364 SFKYSPRLGTPGSNMLE-QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422
            F YS R  T   + L+  V   VK  RL  L    RE+    N   VG    VL+E   
Sbjct: 437 LFAYSMRKKTRAYHRLQDDVPPEVKQRRLEELISVFREEAGRVNQRTVGSTQLVLVEGPS 496

Query: 423 K-EKGKLVGR-----------SPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           K    +L GR           +P   ++ L +K    GD + V+IT     +L G L+
Sbjct: 497 KRSPAELCGRNDGNTKVIFSETPKADNLALENKIQP-GDYVLVKITSSSSQSLKGTLL 553


>gi|219849842|ref|YP_002464275.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Chloroflexus
           aggregans DSM 9485]
 gi|219544101|gb|ACL25839.1| RNA modification enzyme, MiaB family [Chloroflexus aggregans DSM
           9485]
          Length = 459

 Score =  252 bits (644), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 161/453 (35%), Positives = 249/453 (54%), Gaps = 29/453 (6%)

Query: 19  DQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAE 78
           DQ    +R++V + GCQMN+ DS R+E      GY      ++A  IVLN+C +R  A E
Sbjct: 16  DQTPRERRYYVWTVGCQMNISDSERLEAALQGVGYSPAARPEEASFIVLNSCSVRASAEE 75

Query: 79  KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRS-PIVNVVVGPQTYYRLP 137
           ++   LG +  +K S      D  +V+ GC+       I     P+V+  V P     + 
Sbjct: 76  RILGKLGELVRVKRSY----PDTKIVLWGCMVGPNNRSIFAEQLPMVDHFVSPSAVDEVV 131

Query: 138 ELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197
            L           +  Y++++    L + D  ++R   V+  + IQ GC+  C++CV+P 
Sbjct: 132 AL---------APNPIYTLDEPA--LPVRD--WSRP-PVSVHVPIQYGCNMTCSYCVIPL 177

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257
            RG E SR L ++V+E R+++  G  EITLLGQ V++W G  L G +   +DLL ++  I
Sbjct: 178 RRGRERSRPLPEIVEEVRRIVARGAKEITLLGQIVDSW-GHDLPG-RPELADLLEAVDPI 235

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
            GL+RLR+ TSHP  M+D LI+    L    P ++LPVQ+GSDR+LK M R +T   Y+ 
Sbjct: 236 PGLLRLRFLTSHPAWMTDRLIETVARLPRCQPEINLPVQAGSDRVLKLMRRGYTVARYKS 295

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
           +I +IR+  P I++++D IVG PGET++DFR TM+L  +IG+ +     +S R GT  + 
Sbjct: 296 LIAKIRAAIPHISLTTDIIVGHPGETEEDFRQTMELCAEIGFDKVHIAAFSARPGTLAAE 355

Query: 378 MLE----QVDENVKAERLLCLQKKLREQQVSFNDA-CVGQIIEVLIEKHGKEKGKLVGRS 432
             +     V  +VK ER   L+ +L+EQ  +   A  +GQ +EVL+E  G+ KGK  GR+
Sbjct: 356 QEQDPALAVPPDVKEERRRRLE-QLQEQIATERMARFLGQTVEVLVE--GESKGKWRGRT 412

Query: 433 PWLQSVVLNSKNHNIGDIIKVRITDVKISTLYG 465
           P  + V  +      G ++ V+IT     +L G
Sbjct: 413 PGNRLVFFSHPADLTGQLVPVKITATSPWSLQG 445


>gi|239623740|ref|ZP_04666771.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239521771|gb|EEQ61637.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 492

 Score =  252 bits (644), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 157/436 (36%), Positives = 247/436 (56%), Gaps = 47/436 (10%)

Query: 14  VSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIR 73
           V ++ D+   P    + ++GCQMN  DS ++  +  + GY  V S ++AD ++ NTC +R
Sbjct: 22  VKELSDRLGRPLTCCINTFGCQMNARDSEKLLGILETIGYRAVES-EEADFVLYNTCTVR 80

Query: 74  EKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQ 131
           E A  +VY  LG++   K    K+   +++ + GC+ Q +   ++I +    V+++ G  
Sbjct: 81  ENANLRVYGRLGQLGAYK----KKHPQMMIALCGCMMQEKEVVDKIKKSYRYVDLIFGTH 136

Query: 132 TYYRLPELLE-------------RARFGKRVV------------DTDYSVEDKFERLSIV 166
             ++L EL+              +A  G  V             DTD  VED       V
Sbjct: 137 NIFKLAELVSLCLDSRKKEDESRKAAEGTPVKGHKHKMVIDVWEDTDQIVED-----LPV 191

Query: 167 DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEIT 226
           +  Y  K GV     I  GC+ FC++C+VPY RG E SR   +++ E R+L  +GV E+ 
Sbjct: 192 ERKYPFKSGV----NIMFGCNNFCSYCIVPYVRGRERSRKPEEIIKEIRRLASDGVVEVM 247

Query: 227 LLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV 286
           LLGQNVN++ GK L+    TF+ LL  + ++ G+ R+R+ TSHP+D+SD LI+       
Sbjct: 248 LLGQNVNSY-GKNLET-PMTFAGLLREVEKVDGIRRIRFMTSHPKDLSDELIEVMAGSGK 305

Query: 287 LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDD 346
           +  +LHLP+QSGS RILK MNR +T  ++  +  RI++  P I++++D IVGFPGET++D
Sbjct: 306 ICRHLHLPLQSGSSRILKEMNRHYTKEQFLDLAARIKAAVPGISLTTDIIVGFPGETEED 365

Query: 347 FRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFN 406
           F  T+D+V ++G+  AF+F YS R GTP + M +QV E+V  ER   L K++  Q +S  
Sbjct: 366 FLETLDVVRRVGFDSAFTFIYSKRTGTPAAAMEDQVPEDVVKERFDRLLKEV--QDISAE 423

Query: 407 DACVGQ--IIEVLIEK 420
             C  +  + EVL+E+
Sbjct: 424 VCCRDEHTVQEVLVEE 439


>gi|195143761|ref|XP_002012866.1| GL23830 [Drosophila persimilis]
 gi|194101809|gb|EDW23852.1| GL23830 [Drosophila persimilis]
          Length = 589

 Score =  252 bits (643), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 146/414 (35%), Positives = 230/414 (55%), Gaps = 25/414 (6%)

Query: 32  YGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLK 91
           YGCQMN  D+  +  +    GYER   ++DADL++L TC +RE A +K+++ L  +R +K
Sbjct: 105 YGCQMNTNDTEVVWSILKQHGYERCQEVEDADLVMLVTCAVREGAEQKIWNRLRHLRAMK 164

Query: 92  NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR-FGKRVV 150
             R  +   L + + GC+A+   E +L +   V+V+ GP +Y  LP LL  +R +G   +
Sbjct: 165 QKRGAKRQPLQLTLLGCMAERLKERLLDQEQCVDVIAGPDSYKDLPRLLAVSRHYGNSAI 224

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
           +   S+++ +  +  V    +     TAF++I  GCD  CT+C+VP+TRG E SR L+ +
Sbjct: 225 NVLLSLDETYADVMPVRLNSDSP---TAFVSIMRGCDNMCTYCIVPFTRGRERSRPLASI 281

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT------------------FSDLLY 252
           V+E + L + GV E+TLLGQNVN++R KG      T                  FS+LL 
Sbjct: 282 VNEVQALQEQGVKEVTLLGQNVNSYRDKGAGQTSDTSLVPGFKTVYKPKTGGIPFSELLQ 341

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
           S++E    +R+R+T+ HP+D SD +++   D   +   LHLP QSG+  +L  M R +T 
Sbjct: 342 SVAEAVPEMRIRFTSPHPKDFSDEVLRVIRDYPNVCKQLHLPAQSGNTEVLARMRRGYTR 401

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
             Y ++++ IR + P + +SSDFI GF GET+ +F  T+ L++++ Y  A+ F YS R  
Sbjct: 402 EAYLELVEHIREILPTVGLSSDFICGFCGETEAEFEDTISLINRVQYNVAYLFAYSMREK 461

Query: 373 TPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK 425
           T      ++ V   VK  RL  + +  RE     +    G+   +LIE  GK K
Sbjct: 462 TTAHRRYVDDVPVAVKTARLQRMVQAFREGATQLHKNFEGKQQLILIE--GKSK 513


>gi|167754793|ref|ZP_02426920.1| hypothetical protein CLORAM_00297 [Clostridium ramosum DSM 1402]
 gi|167705625|gb|EDS20204.1| hypothetical protein CLORAM_00297 [Clostridium ramosum DSM 1402]
          Length = 428

 Score =  252 bits (643), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 155/432 (35%), Positives = 245/432 (56%), Gaps = 30/432 (6%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y+S  M  +F   GY+ V+    AD+ V+NTC +      K        R +
Sbjct: 8   TLGCKVNTYESNAMLKIFNEAGYQEVDFKQVADVYVINTCTVTNTGDSKS-------RQM 60

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR---LPELLERARFGK 147
               I++     + V GC +Q   EEI  +   V VV+G Q  YR   +  + E    G+
Sbjct: 61  IRKAIRKNPKATICVVGCYSQTAPEEI-EKIEGVGVVLGTQ--YRSDIVKYVDEHLGTGE 117

Query: 148 RVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
            V+  D  +   KFE L+I     +R +   AFL IQ+GC+ FCT+C++PY RG   SR 
Sbjct: 118 MVIKVDNVMNLRKFEDLNI-----DRFKNTRAFLKIQDGCNNFCTYCIIPYARGRVRSRQ 172

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
              V+++A+KL+DNG  EI L G +   +   G D +  +F +LL  L +IKGL RLR +
Sbjct: 173 KESVLNQAQKLVDNGYVEIVLTGIHTAGY---GEDLDDYSFYELLVDLVKIKGLKRLRIS 229

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
           +     +SD +I   G  ++++ +LH+P+Q+GSD  LK MNR++T  EY + I++IRS  
Sbjct: 230 SIETSQISDEIIDLIGSNEIIVDHLHVPLQAGSDATLKRMNRKYTTAEYLEKINKIRSYL 289

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           P+IA ++D IVGFPGETD++F  T + + ++ Y++   F YSPR  TP + M +QV++ +
Sbjct: 290 PNIAFTTDVIVGFPGETDEEFEETYNFIKQVNYSELHVFPYSPRKNTPAAKMKDQVNDQI 349

Query: 387 K---AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
           K   A RLL L K+L  +   F    +G+ ++VL EK   E   L+G +     V + + 
Sbjct: 350 KHERANRLLQLSKELNHE---FALKQIGKTLKVLFEKRDGE--YLIGHAGDYLKVKVKTA 404

Query: 444 NHNIGDIIKVRI 455
           ++ IG+I+ ++I
Sbjct: 405 DNLIGEIVTIKI 416


>gi|253826987|ref|ZP_04869872.1| putative 2-methylthioadenine synthetase [Helicobacter canadensis
           MIT 98-5491]
 gi|253510393|gb|EES89052.1| putative 2-methylthioadenine synthetase [Helicobacter canadensis
           MIT 98-5491]
          Length = 425

 Score =  251 bits (642), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 151/440 (34%), Positives = 245/440 (55%), Gaps = 22/440 (5%)

Query: 36  MNVYDSLRM-EDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSR 94
           MN  DS  +  ++   + Y       +ADLI++NTC +REK  +K++S +G+   +K   
Sbjct: 1   MNERDSEHIIAELEEKENYTLTEDPKEADLILINTCSVREKPEKKLFSEIGQYAKIKKED 60

Query: 95  IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDY 154
            K G      V GC A   G EIL++S  VN V+G +   ++ ++L + R     VD DY
Sbjct: 61  AKIG------VCGCTASHLGNEILKKSKAVNFVLGARNVSKISQILHKDRVA--WVDIDY 112

Query: 155 SVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEA 214
                 +   +    +N    +   + I  GCDK CT+C+VP+TRG EIS     ++ EA
Sbjct: 113 D-----DSTYVFSSKHNST--LKGMINISIGCDKQCTYCIVPHTRGNEISIPADLILKEA 165

Query: 215 RKLIDNGVCEITLLGQNVNAW-RGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
           +KL+DNG  EI LLGQNVN + R    D  K  F+ LL  +S+I GL R+R+T+ HP  M
Sbjct: 166 KKLVDNGTKEILLLGQNVNNYGRRFSNDHRKINFTQLLNEISQINGLERIRFTSPHPLHM 225

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
            D  I    +   +   +H+P+QSGS +IL+ M R ++   +   + ++R++ PD++I +
Sbjct: 226 DDEFINEFANNPKICKAIHMPLQSGSTKILQKMKRGYSKEWFLDRVAKMRALIPDLSIGT 285

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ-----VDENVKA 388
           D IVGFP E+++DF  T+D+++K+ +   +SF YS R  T  +  L+      +DE +  
Sbjct: 286 DIIVGFPTESEEDFLDTLDVLEKVRFDTLYSFIYSTRPHTQAATWLDNGEIQLLDEEIAK 345

Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIG 448
            RL+ L+ + +E     N   +G+I  VL E + +E   L GRS   + + + +  + IG
Sbjct: 346 NRLMILKDRHKEILAQENAKQLGKIHPVLFESYDEENFLLEGRSDTNKLIRVKAGRNLIG 405

Query: 449 DIIKVRITDVKISTLYGELV 468
           +I  V+I+++K + L GEL+
Sbjct: 406 EICNVKISEIKGAQLIGELL 425


>gi|170040301|ref|XP_001847942.1| CDK5 regulatory subunit-associated protein 1 [Culex
           quinquefasciatus]
 gi|167863869|gb|EDS27252.1| CDK5 regulatory subunit-associated protein 1 [Culex
           quinquefasciatus]
          Length = 579

 Score =  251 bits (642), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 153/447 (34%), Positives = 241/447 (53%), Gaps = 26/447 (5%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F + YGCQMN  D+  +  +     Y+R  S+ DAD+++L TC IR+ A   V++ L
Sbjct: 78  RKVFFEVYGCQMNTNDTEIVWSILKGHEYQRTGSIKDADVVLLMTCAIRDGAESTVWNRL 137

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             +R +K  R  EG  L V V GC+A+    +++ +   V+VV GP +Y  LP LL   +
Sbjct: 138 KHVRLMKERRESEGRALQVGVLGCMAERLKRQLVEKEGSVDVVAGPDSYKDLPRLLAVGQ 197

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G++ ++   S+++ +  +  V    +RK   TA+++I  GCD  C++C+VP+TRG E S
Sbjct: 198 KGQKAINVLLSLDETYADVMPVK--LDRK-SRTAYVSIMRGCDNMCSYCIVPFTRGKERS 254

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWR--GKGLDGEKCT---------------- 246
           R ++ + DEA  L   G+ EITLLGQNVN++R      DGEK                  
Sbjct: 255 RPVASIRDEALHLEAKGIKEITLLGQNVNSYRDLSTESDGEKQASVLAPGFKTVYKTKVG 314

Query: 247 ---FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
              F++LL  L+EI   +R+R+T+ HP+D    +++       +   LHLP QSGS  +L
Sbjct: 315 GLRFAELLTELAEIVPEMRIRFTSPHPKDFPREVLETIARYPNICKSLHLPAQSGSSTVL 374

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           + M R +T   Y  ++D +R++ P++ +SSDFI GF GETD +F  T+ L++++GY  AF
Sbjct: 375 ERMRRGYTREAYLNLVDEVRTIVPNVTLSSDFICGFCGETDAEFAETLSLIEQVGYHTAF 434

Query: 364 SFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422
            F YS R  T       + V   +K +RL  + K  R      N   VG+   +L+E   
Sbjct: 435 LFAYSMREKTTAHRRFTDDVPNPIKQQRLRDMIKVFRAGAERLNAQFVGREELILVEGAS 494

Query: 423 KEK-GKLVGRSPWLQSVVLNSKNHNIG 448
           K     L GR+     V++   +  IG
Sbjct: 495 KRSPNDLAGRNDGNVKVIIPGGDVPIG 521


>gi|195443590|ref|XP_002069485.1| GK11551 [Drosophila willistoni]
 gi|194165570|gb|EDW80471.1| GK11551 [Drosophila willistoni]
          Length = 576

 Score =  251 bits (642), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 155/470 (32%), Positives = 243/470 (51%), Gaps = 39/470 (8%)

Query: 32  YGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLK 91
           YGCQMN  D+  +  +    GY+R +  ++AD+I+L TC +R+ A +K+++ L  +R LK
Sbjct: 95  YGCQMNTNDTEVVWSILQENGYQRCHDQNEADVIMLVTCAVRDGAEQKIWNRLRHLRALK 154

Query: 92  NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR-FGKRVV 150
             R    G L + + GC+A+   E +L +   V+V+ GP +Y  LP LL  +R +G   +
Sbjct: 155 EKRSSRRGPLQLTLLGCMAERLKERLLEQEKSVDVIAGPDSYKDLPRLLAVSRHYGNSAI 214

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
           +   S+++ +  +  V          TAF++I  GCD  C++C+VP+TRG E SR L  +
Sbjct: 215 NVLLSLDETYADVMPVRLN---SESPTAFVSIMRGCDNMCSYCIVPFTRGRERSRPLESI 271

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT--------------------FSDL 250
           V E   L + GV E+TLLGQNVN++R +    E  T                    FS L
Sbjct: 272 VREVLTLQEQGVKEVTLLGQNVNSYRDRSGQDEDNTKDAPVPGFKTVYKPKSGGLPFSKL 331

Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
           L S++E    +R+R+T+ HP+D SD +++   D   +   LHLP QSG+ ++L  M R +
Sbjct: 332 LESVAEAVPEMRIRFTSPHPKDFSDDVLRIIRDYPNVCKQLHLPAQSGNSQVLARMRRGY 391

Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370
           T   Y ++++ IR + P + +SSDFI GF GETD++F  T+ L+ K+ Y  A+ F YS R
Sbjct: 392 TREAYLELVEHIRKILPHVGLSSDFICGFCGETDEEFEDTISLIQKVRYNVAYLFAYSMR 451

Query: 371 LGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KL 428
             T      ++ V   VK +RL  + +  R      +   VGQ   +LIE   K      
Sbjct: 452 EKTTAHRRFVDDVPLAVKTQRLQRMVQAFRTGATQLHQEFVGQQQLILIEGRSKRSALHW 511

Query: 429 VGRSPWLQSVVLNS-------------KNHNIGDIIKVRITDVKISTLYG 465
            GR+     V++ S             K+  +GD +  RI +     L G
Sbjct: 512 FGRNDANIKVIVPSMEVPVAGQDSSEMKSFGVGDFVVARIEESNSQVLKG 561


>gi|260789490|ref|XP_002589779.1| hypothetical protein BRAFLDRAFT_125887 [Branchiostoma floridae]
 gi|229274962|gb|EEN45790.1| hypothetical protein BRAFLDRAFT_125887 [Branchiostoma floridae]
          Length = 514

 Score =  251 bits (642), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 155/487 (31%), Positives = 248/487 (50%), Gaps = 51/487 (10%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ + ++YGCQMNV D+     +    GY+R  S++DAD+I+  TC IRE A +K+++ L
Sbjct: 6   RKVYFETYGCQMNVSDTEIAWSVLKDSGYQRTESVNDADVILAVTCAIRENAEQKIWTRL 65

Query: 85  GRIRNLKNSRIKE--------GGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL 136
              R +K  R K         G +  V +  C+A+   +++L R   V+++ GP  Y  L
Sbjct: 66  QEFRAMKTRRNKSRPLKVGVLGKENCVDILRCMAERLKKDLLEREKSVDLIAGPDAYRDL 125

Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIV--DGGYNRKRGVTAFLTIQEGCDKFCTFCV 194
           P LL     G++  +   S+++ +  +  V  + G       TAF++I  GCD  C++C+
Sbjct: 126 PRLLSVTESGQQAANVVLSLDETYADVMPVRMNAG-----APTAFVSIMRGCDNMCSYCI 180

Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT-------- 246
           VP+TRG E SR +  +++E R L   GV E+TLLGQNVN++R       +          
Sbjct: 181 VPFTRGRERSRPIKSILEEVRALSGQGVKEVTLLGQNVNSYRDMSEQQHQLADSPTNLSA 240

Query: 247 --------------FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLH 292
                         FS LL  ++++   +R+R+ + HP+D  D +++   D   +  +LH
Sbjct: 241 GFGTIYRKKKGGLRFSALLDRVAQVDPEMRIRFVSPHPKDFPDEVLQLIRDRPNICNHLH 300

Query: 293 LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352
           LP QSGS ++L+SM R HT   Y +++  ++ V PD+++SSDFIVGF GET+DD   T+ 
Sbjct: 301 LPAQSGSSQVLQSMRRNHTREAYLELVQHVKKVIPDVSLSSDFIVGFCGETEDDHNQTLS 360

Query: 353 LVDKIGYAQAFSFKYSPRLGTPG-SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVG 411
           L   + Y  A+ F YS R  T     +++ V  +VK  RL  L    R+     N   +G
Sbjct: 361 LARLVRYDNAYLFAYSMRKKTHAYHKLMDDVPADVKQRRLAELINVCRQGMAEANAEKIG 420

Query: 412 QIIEVLIEKHGKEKGK-LVGRSPWLQSVVL------------NSKNHNIGDIIKVRITDV 458
           Q+  VL+E   K+    L GR+     V++             S     GD + V+IT  
Sbjct: 421 QVHLVLVEGVSKKSASDLAGRNDGNTKVIIPNMDIPDEVGGQKSSPMKTGDYVAVKITSY 480

Query: 459 KISTLYG 465
               L G
Sbjct: 481 TSQVLKG 487


>gi|257456801|ref|ZP_05621985.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Treponema vincentii ATCC
           35580]
 gi|257445807|gb|EEV20866.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Treponema vincentii ATCC
           35580]
          Length = 456

 Score =  251 bits (642), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 153/464 (32%), Positives = 260/464 (56%), Gaps = 29/464 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           ++F+++YGCQMN  +S  +E +   +G+E    +   +L+++NTC +R  A  +V+  LG
Sbjct: 2   KYFIETYGCQMNFAESAALEQLLRERGWEAAEDIQHCNLLIVNTCSVRITAETRVFGRLG 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG---PQTYYRLPELLER 142
                  S +K+  D  +++ GC+AQ   +EI  + P+++ VVG      + ++ + +ER
Sbjct: 62  LF-----SAMKKKQDFTIILMGCMAQRLHDEIKSKFPLLDYVVGMFERDQFTKIFDAVER 116

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT-----AFLTIQEGCDKFCTFCVVPY 197
             F +  V  +  +     + S  +  Y  +R  T     +F+ I  GC+ FCT+C+VPY
Sbjct: 117 ETFWEGSVAGNAKLASFCPQSSNEERYYFSERSYTEGTFQSFVPIMNGCNNFCTYCIVPY 176

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG-KGLDGEKCTFSDLLYSLSE 256
            RG EISR +  ++DE   L   GV EITLLGQNVN++ G     G K  F  LL ++S+
Sbjct: 177 IRGREISRPVESILDEITFLSGKGVKEITLLGQNVNSYHGIDPTSGSKVNFPALLRAVSQ 236

Query: 257 I---KGLVR-LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
               + +++ +R+ +SHP+D+SD LI+   +   +   LHLPVQ+GSD +L  MNR +T 
Sbjct: 237 TCTKQDVIKWIRFISSHPKDLSDELIEVMAEDPRVCKSLHLPVQNGSDEVLARMNRGYTV 296

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
            +Y +I++++R+  P+I +++D ++GFPGET  +F  T+DL+  + +  AF + Y+PR G
Sbjct: 297 EQYLKIVEKLRNRIPNIVLTTDILIGFPGETQAEFEKTLDLMRTVQFDSAFMYHYNPREG 356

Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFND----ACVGQIIEVLIEKHGKEKG-K 427
           T   N  +++ +   AER+  LQ+ +  QQ S  D      VG  + +L+E   +    +
Sbjct: 357 TKAYNFPDRIPD---AERINRLQQVIDLQQ-SITDLKMQQRVGSTVMMLVESQSRNNPDE 412

Query: 428 LVGRSPWLQSVVLNSK--NHNIGDIIKVRITDVKISTLYGELVV 469
           L G +   +  VL  K    +IG  +KV++  +K  T     VV
Sbjct: 413 LFGHTEQGEMAVLAEKCDPKHIGHFMKVQLQSIKGKTFRAVPVV 456


>gi|261749500|ref|YP_003257186.1| RNA modification protein [Blattabacterium sp. (Periplaneta
           americana) str. BPLAN]
 gi|261497593|gb|ACX84043.1| RNA modification protein [Blattabacterium sp. (Periplaneta
           americana) str. BPLAN]
          Length = 466

 Score =  251 bits (641), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 159/459 (34%), Positives = 254/459 (55%), Gaps = 23/459 (5%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
            P  ++++SYGCQMN+ D+  +  +    G+   N++  A +I+LNTC IR+KA   + +
Sbjct: 11  TPFFYYIESYGCQMNISDTEIIISILSKNGFLLTNNLKKAHIILLNTCAIRKKAELSIKN 70

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            L  +R LK++  K     L  + GC++++E     + S +++  +GP +Y ++P+++  
Sbjct: 71  RLENLRYLKSNNQKIP---LFGILGCLSKSE-----KYSNLIDFSIGPNSYRKIPDIIRL 122

Query: 143 ARFG-KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
                ++ +      E++ E    +    + K+ +T FL+I  GCD  CTFC+VP+TRG 
Sbjct: 123 VMMNDEKKIKPILLSENQNETYENISPSPSIKK-ITTFLSITRGCDNMCTFCIVPFTRGR 181

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNA--WRGKGL--------DGEKCT-FSDL 250
           E S S   ++ E   L + G  E+TLLGQNV++  W G GL        + EK   FS L
Sbjct: 182 ERSSSPYSIIKECENLYEKGYKEVTLLGQNVDSYLWFGGGLKKQIKIDNNNEKIIDFSRL 241

Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
           L  L+     +R+R++TS+P DMSD +I+       +  ++HLPVQSGS++ILK MNR++
Sbjct: 242 LDLLASKIPFMRIRFSTSNPHDMSDRVIEVISKHSNICKHIHLPVQSGSNKILKLMNRKY 301

Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370
           T  +Y  +I +IRS+ P+ +IS D I GF  E ++D   T+ L++K+ Y   + F YSPR
Sbjct: 302 TREKYLSLIQKIRSIIPECSISHDIITGFCNEEEEDHLETISLMNKVKYDYGYMFSYSPR 361

Query: 371 LGTPGSNML-EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKL 428
            GT     L + V EN+K +RL  +    R   +      +G I EVLIE K  K     
Sbjct: 362 AGTYAYKKLKDNVPENIKKKRLKEIIDLQRIHSIFRMKKYLGTIQEVLIEGKSKKNNQDW 421

Query: 429 VGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
            GR+     VV   K   IG+ + V+IT+   +TL G +
Sbjct: 422 YGRNTQNIVVVFPKKLSKIGETVFVKITNCTSATLIGRI 460


>gi|150019979|ref|YP_001305333.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Thermosipho
           melanesiensis BI429]
 gi|229891013|sp|A6LJ47|MIAB_THEM4 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|149792500|gb|ABR29948.1| RNA modification enzyme, MiaB family [Thermosipho melanesiensis
           BI429]
          Length = 430

 Score =  251 bits (641), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 155/448 (34%), Positives = 253/448 (56%), Gaps = 26/448 (5%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++  +K+YGCQMN  DS   +     +GYE  N+ +DAD+++LNTC +R+K+ +K YS +
Sbjct: 2   KKIHIKTYGCQMNENDSEVAKFYLEEEGYEITNNENDADIVILNTCVVRKKSEDKFYSHI 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           G ++  K ++I       + + GC A+ E E++ +R   V  V+G +    +P+ +ERA 
Sbjct: 62  GELK--KQNKI-------IGIMGCGAEKEKEKLFKRG--VKFVIGTRAIPLIPQAVERAI 110

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            GK+        EDK + +        R     A++TI  GC++FCT+C+VPYTRG E S
Sbjct: 111 NGKKSA----IFEDKMDEID-YKKILKRNSKHHAWITIIYGCNRFCTYCIVPYTRGREKS 165

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R +  +++E   L  +G+ E+T LGQNV+A+ GK L+ +  + + LL    +I+ + R+ 
Sbjct: 166 RKMDDIINEVENLAKSGIKEVTYLGQNVDAY-GKDLN-DGSSLAKLLNLTKDIEEIERIW 223

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           + TS+P D S  +     +   +   +HLPVQ GS++ILK MNRR+T  EY ++I+ IR 
Sbjct: 224 FLTSYPTDFSLDIAHEVANSSKITKNIHLPVQHGSNKILKKMNRRYTIEEYIELINDIRK 283

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE-QVD 383
           + PD +ISSD IVGFP ET++DF  T++LV  I + +     YSPR GT      E  V 
Sbjct: 284 IVPDASISSDIIVGFPDETEEDFEKTVELVKNIKFERLNLAIYSPREGTIAWKYFEDNVP 343

Query: 384 ENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440
             +K +R+   L LQK++ +Q    N+  + + +E+++E   K  G   GR    + +  
Sbjct: 344 RIIKTKRMAYILNLQKEINKQ---LNENYLNKTVEIIVETKAKS-GLYYGRDIRNKIIAF 399

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 IG  + V++       LYG+++
Sbjct: 400 EGDKSLIGKKVLVKVKKTTAGPLYGDII 427


>gi|167750510|ref|ZP_02422637.1| hypothetical protein EUBSIR_01486 [Eubacterium siraeum DSM 15702]
 gi|167656436|gb|EDS00566.1| hypothetical protein EUBSIR_01486 [Eubacterium siraeum DSM 15702]
          Length = 486

 Score =  251 bits (640), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 158/447 (35%), Positives = 244/447 (54%), Gaps = 23/447 (5%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V S+GCQ NV D  +++ M    GY        ADLI+ NTC +RE A ++V+  +G ++
Sbjct: 52  VHSFGCQQNVSDGEKIKGMLAQMGYGFTPETAFADLILFNTCAVRENAEDRVFGNIGALK 111

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAE--GEEILRRSPIVNVVVGPQTYYRLPELL-ERARF 145
            LK    ++  +L++ V GC+ Q E   + + +  P V+++ G    + LP+++ E+   
Sbjct: 112 KLK----EKNRNLIIAVGGCMVQQEHIAQRMRKSFPQVDIIFGTHVMHTLPQMIYEKLSE 167

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            +R +    S     E L ++     R+  V A + I  GC+ FCT+C+VP+ RG E SR
Sbjct: 168 NRRTLSIPESDGVIAEGLPVI-----RESKVKASVPIMYGCNNFCTYCIVPFVRGRERSR 222

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
              +V+ E + LI++G  EI LLGQNVN++ GK  D     F+ LL  L +I G  +L +
Sbjct: 223 RPEEVIAEVKGLINDGYKEILLLGQNVNSY-GKEYD---FGFAKLLSELDKIPGKYKLSF 278

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
            TSHP+D +  LI    D   +  +LHLPVQ GSDRILK MNR +    Y ++I+  +  
Sbjct: 279 MTSHPKDCTHELIDTIADSRHISYHLHLPVQCGSDRILKEMNRHYDTAHYLELIEYAKKR 338

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P +A+++D IVGFPGET +DF  T++L+ K+ Y  A++F YS R GT  + M + + + 
Sbjct: 339 IPKVALTTDIIVGFPGETYEDFLGTVELMKKVRYDSAYTFIYSKREGTKAAAMPDPISDE 398

Query: 386 VKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441
            K +   +LL +Q  + E+     +  +G  +EVL E  G+   G + G S     V  N
Sbjct: 399 DKGKWFRQLLDVQNSIGEKAY---ERFIGDEVEVLCEGIGRTADGLMTGHSRHGVIVDFN 455

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                IG  + VRI       + GELV
Sbjct: 456 GTRDMIGKYVTVRIQKALPWAVTGELV 482


>gi|242071517|ref|XP_002451035.1| hypothetical protein SORBIDRAFT_05g023010 [Sorghum bicolor]
 gi|241936878|gb|EES10023.1| hypothetical protein SORBIDRAFT_05g023010 [Sorghum bicolor]
          Length = 601

 Score =  251 bits (640), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 168/490 (34%), Positives = 253/490 (51%), Gaps = 49/490 (10%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGY-ERVNSMDDADLIVLNTCHIREKAAEKVYS-- 82
           R + ++YGCQMN+ D   +  +  + GY E V   + A++I +NTC IR+ A +KV+   
Sbjct: 95  RIYHETYGCQMNINDMEIVLSIMKNDGYDEIVPDPESAEIIFINTCAIRDNAEQKVWQRL 154

Query: 83  ----FLGR--IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL 136
               FL R    N+   R K      + V GC+A+   E+IL    +V+VV GP  Y  L
Sbjct: 155 NYFWFLKREWKANVAEGRSKSLRPPKIAVLGCMAERLKEKILDSDKMVDVVCGPDAYRDL 214

Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
           P LL+   +G + ++T  S+E+ +  ++ V    N    VTAF++I  GC+  C+FC+VP
Sbjct: 215 PRLLQEVDYGHKGMNTLLSLEETYADITPVRISDN---SVTAFVSIMRGCNNMCSFCIVP 271

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA---------------WRGKGLD 241
           +TRG E SR +S +V E  +L   GV E+ LLGQNVN+               W+     
Sbjct: 272 FTRGRERSRPVSSIVREVGELWKAGVKEVMLLGQNVNSYNDTSEVEELEPGQNWQLSEGF 331

Query: 242 GEKCT-------FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP 294
              C        F+DLL  LS     +R R+T+ HP+D  D L+    D   +   +HLP
Sbjct: 332 SSMCKVKNMGLRFADLLDRLSLEYPEMRFRFTSPHPKDFPDELLYLMRDRYNICNLIHLP 391

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
            Q+GS  +L+ M R +T   Y +++ +IR+V PD+ +SSDFI GF GET+DD   T+ LV
Sbjct: 392 AQTGSTAVLERMRRGYTREAYLELVHKIRNVIPDVGLSSDFITGFCGETEDDHAETLSLV 451

Query: 355 DKIGYAQAFSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQI 413
             +GY  A+ F YS R  T    N  + V E+VK  RL+ L    RE      D+ +G +
Sbjct: 452 RAVGYDMAYMFAYSMREKTHAHRNYEDDVPEDVKQRRLMELINTFRETTKKNYDSQIGTV 511

Query: 414 IEVLIEKHGKE--KGKLVGRSPWLQSVVLNS------------KNHNIGDIIKVRITDVK 459
             VL+E   K   K +L+G++     V   S            +   +GD ++V+I    
Sbjct: 512 QLVLVEGPNKRAPKTELIGKTDRGHKVSFASVPIPHTFEGEEARKPVVGDFVEVKILRSS 571

Query: 460 ISTLYGELVV 469
            +TL+GE + 
Sbjct: 572 TATLFGEPIA 581


>gi|229890683|sp|Q7VGP6|MIAB_HELHP RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
          Length = 462

 Score =  251 bits (640), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 158/451 (35%), Positives = 242/451 (53%), Gaps = 25/451 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRM-EDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + F+++ GC MN  DS  M  ++   + Y   N +  ADLI++NTC +REK  +K++S +
Sbjct: 2   KLFIQTLGCAMNERDSAHMIAELRDKKHYTLTNDIKQADLILINTCSVREKPEKKLFSEI 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           G     K +  K G      V GC A   GEEI++++P V+ V+G +   ++ ++LER +
Sbjct: 62  GAFAKEKKAGAKIG------VCGCTASHLGEEIIKKAPSVDFVLGARNVSKITQVLERPK 115

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
                V+ D   +D     +   G      G+ A L I  GCDK C++C+VP+TRG EIS
Sbjct: 116 ----AVEVDIDYDDSTYVFASSQG-----MGIKAHLNISIGCDKKCSYCIVPFTRGKEIS 166

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-GLDGEKCTFSDLLYSLSEIKGLVRL 263
                ++ EA+K + +G  E+ LLGQNVN +  +      K  F+ LL +LSEI GL R+
Sbjct: 167 VPKDLLISEAKKCVASGAKELLLLGQNVNNYGVRFSHSHPKTNFTQLLRALSEIDGLYRI 226

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+T+ HP  M D  ++      V+   +H+P+QSGS +ILK M R +    Y   I +++
Sbjct: 227 RFTSPHPLHMDDEFLEEFASNPVIAKGIHIPLQSGSSQILKMMRRGYDKQWYLNRIAKLK 286

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG----SNML 379
           S+ P++ I +D IVGFP E++ DF  TM+++  + +   +SF YSPR  T       +ML
Sbjct: 287 SLVPNVGIGTDIIVGFPTESEQDFEDTMEVLSLVEFDTLYSFVYSPRPHTSAFEYDKSML 346

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV--GRSPWLQS 437
             V   V  ERL  LQ   +E         +G+I  VLIE H   +G+    GRS   + 
Sbjct: 347 --VSPEVAKERLARLQNLHKEILSKKAQLEIGRIHNVLIENHYNGEGQCWSEGRSSSNKL 404

Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           + +  K   IG I+KV IT  +   L G  +
Sbjct: 405 IKILDKKCEIGSIVKVEITHNEGGGLMGRFI 435


>gi|330836453|ref|YP_004411094.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Spirochaeta coccoides DSM
           17374]
 gi|329748356|gb|AEC01712.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Spirochaeta coccoides DSM
           17374]
          Length = 443

 Score =  251 bits (640), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 148/450 (32%), Positives = 253/450 (56%), Gaps = 19/450 (4%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+ +++++YGCQMNV +S  +E M    G +  +S ++AD  +LNTC +R+ A  +++  
Sbjct: 9   PKTYWIETYGCQMNVAESHELETMLQGVGLQPASSAENADCAILNTCSVRKTAENRIWGR 68

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LG  +++K  R++      ++V GC+A+   EE+++ +P ++ VVG    +R+ ELL   
Sbjct: 69  LGLFQHIKQERLQ-----TLIVTGCMAERLKEELIKEAPAIDHVVGTNDKHRIVELLTGV 123

Query: 144 RFGKRVVD-TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
             G  ++D   Y   + + +    DG Y      ++F+ I  GC+ FC++C+VP+ RG E
Sbjct: 124 ASGTCLLDGARYEFGETYHK----DGDY------SSFVPIMNGCNLFCSYCIVPFVRGRE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS-EIKGLV 261
           ISR+   V++E R+L   GV EITLLGQ VN +R K  DG    F +LL  +  E+  + 
Sbjct: 174 ISRNPQAVINEVRRLDSLGVKEITLLGQTVNNYRYKKEDGTFMRFPELLELICVELDSIR 233

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
            +R+ + HPR  +  LI        +  +LH+P+QSGS  ILK+M R ++  ++  +I  
Sbjct: 234 WVRFESPHPRFFTRELIDVIARNPRIARHLHIPMQSGSSSILKAMMRDYSREKFLTLIAD 293

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           IR   PD+  ++D +VGFPGET++D+  T+  +D+    +AF + ++PR GT   ++ + 
Sbjct: 294 IREKIPDVTFATDVMVGFPGETEEDYELTLSAMDECRNVEAFMYYWNPREGTKAVDLPDH 353

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVV- 439
           V E VK  RL  L  +    Q     A +G+  ++L+  H + +K  L+GR+     VV 
Sbjct: 354 VPETVKLARLQILIDRQLALQSVEKTARLGKDEDILVTGHSRDDKDALLGRTEHNGMVVF 413

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELVV 469
           +     + GD+ +VR+  +   T  G  V+
Sbjct: 414 IPYAPLHPGDVARVRLDSLSGGTFRGTHVL 443


>gi|312084023|ref|XP_003144103.1| hypothetical protein LOAG_08525 [Loa loa]
 gi|307760732|gb|EFO19966.1| hypothetical protein LOAG_08525 [Loa loa]
          Length = 568

 Score =  250 bits (639), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 164/468 (35%), Positives = 252/468 (53%), Gaps = 46/468 (9%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           +YGCQMNV D   +  +  S GY   + + +AD+++L TC IRE A  KV+  L  +R +
Sbjct: 82  TYGCQMNVNDVELVRSLLLSSGYMETDDVKEADIVLLMTCSIREGAENKVWDELKVLRKI 141

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
              R K+G   +V V GC+A+     +L  +  V+VV GP +Y  LP LL  AR G   +
Sbjct: 142 ---RRKKG---VVGVLGCMAERVRHNLLTYTENVDVVAGPDSYRDLPRLLAIARCGSMAI 195

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
           +   S+E+ +  +  V      K   TAF++I  GCD  CT+CVVPYTRG E SR ++ +
Sbjct: 196 NVQLSLEETYADIVPVRKD---KFSKTAFVSIMRGCDNMCTYCVVPYTRGRERSRPINSI 252

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRG------------------------KGLDGEKCT 246
           +DE R L D GV ++TLLGQNVN++R                         K   G + T
Sbjct: 253 LDEIRSLSDEGVKQVTLLGQNVNSYRDLSEISFPSACLTEPGTAPGFRTKYKPKKGGR-T 311

Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306
           F  LL  +S+I   +R+R+T+ HP+D    +I+   +   +   +HLP QSGS+ +L +M
Sbjct: 312 FLTLLDKVSQIDPEMRIRFTSPHPKDFPLEVIQLIKERSNICKQIHLPAQSGSNAVLDAM 371

Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
           +R ++   Y +++DRI++V P+++++SDFI GF GET++  R ++DL+  + Y+  + F 
Sbjct: 372 DRGYSRESYLELVDRIKAVLPNVSLTSDFIAGFCGETEESHRESLDLIRHVVYSFCYVFP 431

Query: 367 YSPRLGTPGSNML-EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK 425
           YS R  T     L + V + VK  R   L    RE  +  N+A VG    VL+E+  K  
Sbjct: 432 YSQREKTKAYRHLKDNVSKEVKNRRHQELANVFRETALKHNEALVGTEQLVLLEETSKRS 491

Query: 426 GK-LVGRSPWLQSVVLNSKNHN---------IGDIIKVRITDVKISTL 463
            + L GR     +V+++ K +N          GD + V+IT     TL
Sbjct: 492 SEHLRGRIDGGVNVIIH-KYYNDGSELVELKPGDYVAVKITSANSQTL 538


>gi|154149237|ref|YP_001406094.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Campylobacter hominis
           ATCC BAA-381]
 gi|229890468|sp|A7I0Q3|MIAB_CAMHC RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|153805246|gb|ABS52253.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Campylobacter hominis
           ATCC BAA-381]
          Length = 429

 Score =  250 bits (639), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 153/445 (34%), Positives = 243/445 (54%), Gaps = 21/445 (4%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
            ++++ GC MNV DS  +      + Y+  + +  ADLI++NTC +REK   K++S +G 
Sbjct: 4   LYLQTLGCAMNVRDSEHIVAELKDE-YKLTDDISKADLILINTCSVREKPVHKLFSEIGA 62

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
              ++ +  K G      V GC A   GEEI  ++P V+ V+G +   ++ E ++  +F 
Sbjct: 63  FNKVRKNGSKIG------VCGCTASHLGEEIFNKAPFVDFVLGARNVSKISEAVKTPKF- 115

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
              + TD + ++     S    G  R     AF+ I  GCDK C++C+VP TRG EIS  
Sbjct: 116 ---ISTDINYDE-----SEFAFGEFRGSPYKAFVNIMIGCDKKCSYCIVPQTRGKEISIP 167

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG--EKCTFSDLLYSLSEIKGLVRLR 264
              +++EA K + NG  EI LLGQNVN + GK      EK  FSDLL  +SEIKG+ R+R
Sbjct: 168 AEIILNEASKAVQNGAKEIFLLGQNVNNY-GKFFSSRHEKMDFSDLLVKISEIKGVERIR 226

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +T+ HP  M D  +        +   +H+P+QSGS ++L+ M R +    +     R+R 
Sbjct: 227 FTSPHPLHMDDKFLDIFTSNPKICKSMHMPLQSGSTKVLRDMRRGYDKEWFLNRALRLRK 286

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           + P+++IS+D IV +P E++DDF+ TM++++++ + Q FSFK+SPR  T   N L  +D 
Sbjct: 287 MCPEVSISTDIIVAYPTESEDDFKDTMEVLNEVKFEQIFSFKFSPRPLTAAEN-LPLIDN 345

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
            + ++RL  LQ +  E         VG+I +V  E+  +  G++ GRS     V +    
Sbjct: 346 EIASKRLEILQSRHNEILDEIMKNQVGKIFDVYFEEL-RANGEVAGRSFSNFLVSVKGSE 404

Query: 445 HNIGDIIKVRITDVKISTLYGELVV 469
             +G I+ VRI       LYG++  
Sbjct: 405 DLLGKILPVRIEKASRMVLYGKITA 429


>gi|312876022|ref|ZP_07736011.1| RNA modification enzyme, MiaB family [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311797220|gb|EFR13560.1| RNA modification enzyme, MiaB family [Caldicellulosiruptor
           lactoaceticus 6A]
          Length = 434

 Score =  250 bits (639), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 151/440 (34%), Positives = 247/440 (56%), Gaps = 19/440 (4%)

Query: 33  GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92
           GC++N Y++  + ++F   G+E V+    AD+ V+NTC +   +  K    + + + L  
Sbjct: 9   GCKVNQYETQAVAELFKENGFEIVDFDSKADVYVINTCTVTNISDRKSRQAIKKAKKLSP 68

Query: 93  SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR---V 149
             I       VVV GC  Q   +E+  +   V++++G +   R+ + + +    K+    
Sbjct: 69  QSI-------VVVMGCYPQVYPQEV-EKIEDVDIIIGTKDRQRIVDYVRQYLEDKKKIVA 120

Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209
           +D +Y  E  FE L I +   + +    AF+ I+EGCD+FC++C++PY RG   SR L  
Sbjct: 121 IDGEYKRE-AFEELKISEFNEHSR----AFIKIEEGCDQFCSYCIIPYARGAVRSRGLKS 175

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSH 269
           + +E R+L+  G  E  + G N++A+ GK LDG K T  D++  ++EI+G+ R+R ++  
Sbjct: 176 IEEEVRRLVQKGYKEFVITGINISAY-GKDLDG-KVTLIDVIERVNEIEGVKRIRLSSLE 233

Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329
           P  M+D  I+     D L  +LHL +QSGSD+ILK MNR +T  +Y+ I+DRIR    D+
Sbjct: 234 PVIMNDEFIERLLGFDKLCHHLHLSLQSGSDKILKLMNRHYTTAQYQGIVDRIREKWEDV 293

Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAE 389
           A ++D IVGFPGET++DF AT++ V KIG+++   F++SP+ GT    M  QVD   K  
Sbjct: 294 AFTTDIIVGFPGETEEDFNATLEFVQKIGFSRIHVFRFSPKKGTKAYEMPNQVDSKEKER 353

Query: 390 RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS-PWLQSVVLNSKNHNIG 448
           R   +++        F+   VG  +EVLIE+     G   G S  +++++V  S     G
Sbjct: 354 RSKIMKEVAANLAYQFHKKFVGNWLEVLIEQDSDFDGYYEGYSGNYIRTLVRKSHMIVPG 413

Query: 449 DIIKVRITDVKISTLYGELV 468
           +I KV+IT      + GE++
Sbjct: 414 EIYKVKITQAYEQYVKGEII 433


>gi|198450948|ref|XP_001358190.2| GA19527 [Drosophila pseudoobscura pseudoobscura]
 gi|198131266|gb|EAL27327.2| GA19527 [Drosophila pseudoobscura pseudoobscura]
          Length = 589

 Score =  250 bits (638), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 146/414 (35%), Positives = 228/414 (55%), Gaps = 25/414 (6%)

Query: 32  YGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLK 91
           YGCQMN  D+  +  +    GYER   ++DADL++L TC +RE A +K+++ L  +R +K
Sbjct: 105 YGCQMNTNDTEVVWSILKQHGYERCQELEDADLVMLVTCAVREGAEQKIWNRLRHLRAMK 164

Query: 92  NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR-FGKRVV 150
             R  +   L + + GC+A+   E +L +   V+V+ GP +Y  LP LL  +R +G   +
Sbjct: 165 QKRGAKRQPLQLTLLGCMAERLKERLLDQEQCVDVIAGPDSYKDLPRLLAVSRHYGNSAI 224

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
           +   S+++ +  +  V    +     TAF++I  GCD  CT+C+VP+TRG E SR L+ +
Sbjct: 225 NVLLSLDETYADVMPVRLNSDSP---TAFVSIMRGCDNMCTYCIVPFTRGRERSRPLASI 281

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT------------------FSDLLY 252
           V+E R L   GV E+TLLGQNVN++R KG      T                  FS+LL 
Sbjct: 282 VNEVRALQVQGVKEVTLLGQNVNSYRDKGAGQTSDTSLVPGFKTVYKPKTGGIPFSELLQ 341

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
           S++E    +R+R+T+ HP+D SD +++   D   +   LHLP QSG+  +L  M R +T 
Sbjct: 342 SVAEAVPEMRIRFTSPHPKDFSDEVLRVIRDYPNVCKQLHLPAQSGNTEVLARMRRGYTR 401

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
             Y ++++ IR + P + +SSDFI GF GET+ +F  T+ L++ + Y  A+ F YS R  
Sbjct: 402 EAYLELVEHIREILPTVGLSSDFICGFCGETEAEFEDTISLINTVQYNVAYLFAYSMREK 461

Query: 373 TPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK 425
           T      ++ V   VK  RL  + +  R+     +    G+   +LIE  GK K
Sbjct: 462 TTAHRRYVDDVPVAVKTARLQRMVQAFRDGATQLHKNFEGKQQLILIE--GKSK 513


>gi|169349836|ref|ZP_02866774.1| hypothetical protein CLOSPI_00574 [Clostridium spiroforme DSM 1552]
 gi|169293404|gb|EDS75537.1| hypothetical protein CLOSPI_00574 [Clostridium spiroforme DSM 1552]
          Length = 428

 Score =  250 bits (638), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 156/432 (36%), Positives = 245/432 (56%), Gaps = 26/432 (6%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y+S  M  +F   GY+ V+  + AD+ V+NTC +      K        R +
Sbjct: 8   TLGCKVNTYESNAMLKIFNEAGYQEVDFKEIADVYVINTCTVTNTGDSKS-------RQM 60

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-ERARFGKRV 149
               I++     V VAGC +Q   EEI  +   V VV+G Q    + + + E  + GK V
Sbjct: 61  IRKAIRKNPQATVCVAGCYSQIAPEEI-EQIEGVGVVLGTQHRKDIVKYVDEYLKTGKPV 119

Query: 150 VDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           +  D  +   KFE L+I     +R +   AFL IQ+GC+ FCT+C++PY RG   SR   
Sbjct: 120 IKVDNVMNLKKFEDLNI-----DRFKNTRAFLKIQDGCNNFCTYCIIPYARGRVRSRDKD 174

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
            V+++A+ L+ NG  EI L G +     G G D +  +F DLL  L +I GL RLR ++ 
Sbjct: 175 SVLNQAKTLVANGYVEIVLTGIHT---AGYGEDLDNYSFYDLLVDLVKIDGLKRLRISSI 231

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
               +SD +I   G  D+++ +LH+P+QSG D  LK MNR++T  +Y + I++IR+  P+
Sbjct: 232 ETSQISDEIINLIGSNDIIVDHLHIPLQSGCDATLKRMNRKYTTSQYLEKINKIRNYLPN 291

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           IA ++D IVGFPGE+D++F  T + + ++ Y++   F YS R  TP + M +QVD+ +K 
Sbjct: 292 IAFTTDVIVGFPGESDEEFEETYNFIKEVNYSELHVFPYSLRRNTPAAKMKDQVDDKIKH 351

Query: 389 E---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445
           E   RLL L KKL      F    +G+I++VL EK  ++   LVG +     V + + ++
Sbjct: 352 ERVNRLLELSKKLNR---DFALKQIGKILKVLFEK--RDGDYLVGHASDYLKVKVKTTDN 406

Query: 446 NIGDIIKVRITD 457
            IG+I++V+I +
Sbjct: 407 LIGEIVEVKINN 418


>gi|164686289|ref|ZP_02210319.1| hypothetical protein CLOBAR_02727 [Clostridium bartlettii DSM
           16795]
 gi|164601891|gb|EDQ95356.1| hypothetical protein CLOBAR_02727 [Clostridium bartlettii DSM
           16795]
          Length = 432

 Score =  249 bits (637), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 148/440 (33%), Positives = 242/440 (55%), Gaps = 17/440 (3%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  M ++F  +GYE+  + D AD+ V+NTC +   +  K   ++ R++  
Sbjct: 8   TLGCKVNQYETEAMLELFEKEGYEKAETEDYADVYVINTCTVTHMSDRKSRQYIRRMK-- 65

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
                K+  D ++ V GC +Q   EEIL     VN+V+G     ++ E +++    ++V 
Sbjct: 66  -----KKNPDAIIAVVGCYSQVSPEEILSIDE-VNLVMGTNDRKKIVEEVKKIDASRKVS 119

Query: 151 DTDYSVEDK-FERLSIVDGGYNRKRGVT-AFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
             D  ++ K FE + I     N+  G T AF+ IQ+GCD++C++C++PY RG   SR L 
Sbjct: 120 TVDDIMKVKAFEEIEI-----NKTNGKTRAFMKIQDGCDRYCSYCIIPYARGRVRSRDLE 174

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
            +V E   L  NG  E+ L G +V ++ GK +        D++  +++I+G+ R+R ++ 
Sbjct: 175 SIVKEVENLASNGYKEVVLTGIHVASY-GKDIKDSDIKLLDVIKQINDIEGIERIRLSSV 233

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
            P   +D  ++A   +D + P+ HL +QSG D  LK M RR+T  EY+ I+DR+R+  P+
Sbjct: 234 EPILFTDEFVEAVSTMDKVCPHYHLSLQSGCDETLKRMKRRYTTEEYKAIVDRLRAAIPN 293

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           ++I++D IVGFPGET+++F  T + +  I       FKYSPR GTP + M  QVD + K 
Sbjct: 294 VSITTDVIVGFPGETNEEFDKTYEFLKDIELTHMHVFKYSPRKGTPAATMENQVDPSTKH 353

Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIG 448
           +R   L +   E    F    + +   VL E+   +  K  G +     V++ S N    
Sbjct: 354 DRSEKLLQLNEENFNKFGQKMLDKEFNVLFEQKVGD-NKYEGLTENYVKVIVESDNDISE 412

Query: 449 DIIKVRITDVKISTLYGELV 468
            I+KV+I DVK   L G LV
Sbjct: 413 QILKVKIKDVKNEFLEGILV 432


>gi|194224319|ref|XP_001500825.2| PREDICTED: CDK5 regulatory subunit associated protein 1 [Equus
           caballus]
          Length = 539

 Score =  249 bits (637), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 136/375 (36%), Positives = 218/375 (58%), Gaps = 25/375 (6%)

Query: 18  VDQCIVPQR-FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA 76
           VDQ +  QR  ++++YGCQMNV D+     +    GY R N++ +AD+I+L TC IREKA
Sbjct: 94  VDQLLGRQRKVYLETYGCQMNVNDTEIAWSILQKSGYLRTNNLQEADVILLVTCSIREKA 153

Query: 77  AEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL 136
            + +++ L ++R LK  R +    L + + GC+A+   EEIL R  IV+++ GP  Y  L
Sbjct: 154 EQTIWNRLHQLRALKTKRPRSRVPLRIGILGCMAERLKEEILNREKIVDILAGPDAYRDL 213

Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
           P LL  A  G++  +   S+++ +  +  V    +     +AF++I  GCD  C++C+VP
Sbjct: 214 PRLLAVAESGQQAANVLLSLDETYADIMPVQTSPS---ATSAFVSIMRGCDNMCSYCIVP 270

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR---------------GKGLD 241
           +TRG E SR ++ +V+E RKL + G+ E+TLLGQNVN++R                +G  
Sbjct: 271 FTRGRERSRPVASIVEEVRKLSEQGLKEVTLLGQNVNSFRDNSEVQFNNAMSTSLSRGFS 330

Query: 242 GEKCT------FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPV 295
               T      F+ LL  +S I   +R+R+T+ HP+D  D +++   + D +   +H+P 
Sbjct: 331 TNYKTKQGGLRFAHLLDQVSRIDPEMRIRFTSPHPKDFPDEVLQLIHERDNICKQIHVPA 390

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
           QSGS R+L++M R ++   Y ++I  IR   P +++SSDFI GF GET++D   T+ L+ 
Sbjct: 391 QSGSSRVLEAMRRGYSREAYVELIHHIRESIPGVSLSSDFIAGFCGETEEDHLQTVSLLR 450

Query: 356 KIGYAQAFSFKYSPR 370
           ++ Y   F F YS R
Sbjct: 451 EVQYNMGFLFAYSMR 465


>gi|115486105|ref|NP_001068196.1| Os11g0592800 [Oryza sativa Japonica Group]
 gi|110832794|sp|Q2R1U4|CK5P1_ORYSJ RecName: Full=CDK5RAP1-like protein
 gi|77551766|gb|ABA94563.1| CDK5RAP1, putative, expressed [Oryza sativa Japonica Group]
 gi|113645418|dbj|BAF28559.1| Os11g0592800 [Oryza sativa Japonica Group]
 gi|215694718|dbj|BAG89909.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222616254|gb|EEE52386.1| hypothetical protein OsJ_34478 [Oryza sativa Japonica Group]
          Length = 600

 Score =  249 bits (637), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 166/498 (33%), Positives = 259/498 (52%), Gaps = 65/498 (13%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGY-ERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           R + ++YGCQMNV D   +  +  ++GY E V   + A++I +NTC IR+ A +KV+  L
Sbjct: 94  RIYHETYGCQMNVNDMEIVLSIMKNEGYDEIVPDPESAEIIFINTCAIRDNAEQKVWQRL 153

Query: 85  ----------------GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVV 128
                           GR R+L+  +I         V GC+A+   E+IL    +V+VV 
Sbjct: 154 NYFWFLKRQWKANVAAGRSRSLRPPKI--------AVLGCMAERLKEKILDSDKMVDVVC 205

Query: 129 GPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
           GP  Y  LP LL+   +G++ ++T  S+E+ +  ++ V    N    VTAF++I  GC+ 
Sbjct: 206 GPDAYRDLPRLLQEVDYGQKGINTLLSLEETYADITPVRISDN---SVTAFVSIMRGCNN 262

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR----------GK 238
            C+FC+VP+TRG E SR +S +V E  +L   GV E+ LLGQNVN++           GK
Sbjct: 263 MCSFCIVPFTRGRERSRPVSSIVREVGELWKAGVKEVMLLGQNVNSYNDTSEVEELEPGK 322

Query: 239 GLD-----GEKCT-------FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV 286
             +        C        F+DLL  LS     +R R+T+ HP+D  D L+    D   
Sbjct: 323 NWELSEGFSSMCKVKNMGLRFADLLDQLSLEYPEMRFRFTSPHPKDYPDELLYLMRDRHN 382

Query: 287 LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDD 346
           +   +H+P QSGS  +L+ M R +T   Y +++ +IRS+ PD+ +SSDFI GF GET+++
Sbjct: 383 VCKLIHMPAQSGSSAVLERMRRGYTREAYLELVQKIRSIIPDVGLSSDFISGFCGETEEE 442

Query: 347 FRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSF 405
              T+ LV  +GY  A+ F YS R  T    N ++ V ++VK  RL  L    RE     
Sbjct: 443 HAETLTLVRAVGYDMAYMFAYSMREKTHAHRNYVDDVPDDVKQRRLAELISTFRETTAKI 502

Query: 406 NDACVGQIIEVLIEKHGKE--KGKLVGRSPWLQSVVLNS------------KNHNIGDII 451
            D+ VG +  VL+E   K   + +++G++     V   S            +   +GD I
Sbjct: 503 YDSQVGTVQLVLVEGPNKRAPETEMIGKTDRGHRVSFASVPVPHTFEGDELRKPVVGDFI 562

Query: 452 KVRITDVKISTLYGELVV 469
           +V+IT    ++L G+++ 
Sbjct: 563 EVKITKSSTASLSGDVIA 580


>gi|47227354|emb|CAF96903.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 522

 Score =  249 bits (637), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 141/417 (33%), Positives = 231/417 (55%), Gaps = 25/417 (5%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ + ++YGCQMNV D+     +   +GY+R   +  AD+++L TC IREKA + +++ L
Sbjct: 56  RKVYFETYGCQMNVNDTEIAWSILQKKGYQRTFDLSQADVVLLVTCSIREKAEQTIWNRL 115

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            ++  +K  R+K    + + + GC+A+    E+L R  +V+++ GP  Y  LP LL  A 
Sbjct: 116 QQLTAMKRRRLKSQTPMKIGILGCMAERLKTELLEREKLVDILAGPDAYRDLPRLLAVAD 175

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G++  +   S+E+ +  +  V   ++  +  +A+++I  GCD  CT+C+VP+TRG E S
Sbjct: 176 GGQQASNVLLSLEETYADIMPV---HHAPQAYSAYVSIMRGCDNMCTYCIVPFTRGRERS 232

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG---LDGEKCT--------------- 246
           R +  +++E  +L D GV E+TLLGQNVN++R        G + T               
Sbjct: 233 RPVRSILEEVSQLSDQGVKEVTLLGQNVNSYRDTSHEQFGGTELTQLSRGFQTVYRTKQG 292

Query: 247 ---FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
              FSDLL  +S I   +R+R+T+ HP+D  D +++   +   +   +HLP QSGS +IL
Sbjct: 293 GLRFSDLLDQVSRIDPDMRIRFTSPHPKDFPDEVLQLIAERKNICQQIHLPAQSGSSKIL 352

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           K+M R +T   Y  ++  I+ + P +++SSDFI GF GE ++D + T+ L+ ++GY   F
Sbjct: 353 KAMRRGYTREAYLDLVKNIKKIIPGVSLSSDFISGFCGEKEEDHQQTLSLIREVGYNVGF 412

Query: 364 SFKYSPRLGTPGSNMLE-QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419
            F YS R  T   + L+  V   VK  RL       RE+    N A V     VL+E
Sbjct: 413 LFAYSMRKKTQAFHRLQDDVPAEVKRRRLEECIGVFREEAARVNGALVRSTQLVLVE 469


>gi|157132304|ref|XP_001655989.1| radical sam proteins [Aedes aegypti]
 gi|108881684|gb|EAT45909.1| radical sam proteins [Aedes aegypti]
          Length = 573

 Score =  249 bits (636), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 159/477 (33%), Positives = 250/477 (52%), Gaps = 44/477 (9%)

Query: 8   IGVAHMVSQIVDQCIVPQ--------RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSM 59
           +G  H V + VD   +P+        + F + YGCQMN  D+  +  +  S  ++R  ++
Sbjct: 59  VGDVHQVERSVDIPYLPRESLLGQKRKVFFEIYGCQMNTNDTEIVWSILKSHDFQRTGNI 118

Query: 60  DDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILR 119
            DAD+++L TC IR+ A   +++ L  IR +K  R  E   L + V GC+A+   ++++ 
Sbjct: 119 KDADVVLLMTCAIRDGAESTIWNRLKHIRLMKGKR-DEAKPLQIGVLGCMAERLKKQLVE 177

Query: 120 RSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAF 179
           +   V+VV GP +Y  LP LL   + G++ ++   S+++ +  +  V    +RK   TA+
Sbjct: 178 KEQAVDVVAGPDSYKDLPRLLAVGQSGQKAINVMLSLDETYADVMPVK--LDRK-SRTAY 234

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
           ++I  GCD  C++C+VP+TRG E SR +S +  EA  L D G+ EITLLGQNVN++R   
Sbjct: 235 VSIMRGCDNMCSYCIVPFTRGRERSRPISSIRKEALNLQDKGIKEITLLGQNVNSYR--- 291

Query: 240 LDGEKCT--------------------------FSDLLYSLSEIKGLVRLRYTTSHPRDM 273
            D  +C+                          F++LL  L+     +R+R+T+ HP+D 
Sbjct: 292 -DTSECSEDTEKQASILAPGFKTVYKTKIGGLRFAELLMDLAVTVPEMRIRFTSPHPKDF 350

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
            + +++       +   LHLP QSGS  +L+ M R +T   Y  +ID +RS+ PD+ +SS
Sbjct: 351 PNAVLETIAKYPNICNSLHLPAQSGSSSVLERMRRGYTREAYLNLIDEVRSLIPDVTLSS 410

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE-QVDENVKAERLL 392
           DFI GF GETD++F  T+ L+ ++ Y  AF F YS R  T      E  V E  K +RL 
Sbjct: 411 DFICGFCGETDEEFSETISLIRQVKYHTAFLFAYSMREKTTAHRRYEDDVPEEKKQQRLR 470

Query: 393 CLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVLNSKNHNIG 448
            +    R      N   VG+   VL+E   K  K  L GR+     V+L S +  +G
Sbjct: 471 EMIAAFRAGAEQLNRQFVGREELVLVEGLSKRSKDDLSGRNDGNIKVILPSGDVPMG 527


>gi|156743179|ref|YP_001433308.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Roseiflexus
           castenholzii DSM 13941]
 gi|156234507|gb|ABU59290.1| RNA modification enzyme, MiaB family [Roseiflexus castenholzii DSM
           13941]
          Length = 480

 Score =  249 bits (636), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 157/449 (34%), Positives = 242/449 (53%), Gaps = 27/449 (6%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +R++V + GCQMNV DS R+E      GY      +DA  IVLN+C +R  A E++   L
Sbjct: 26  RRYYVWTVGCQMNVSDSERLEAALQGVGYAPAERPEDASFIVLNSCSVRASAEERILGKL 85

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILR-RSPIVNVVVGPQTYYRLPELLERA 143
             ++ +K    +   D  +V+ GC+     + I + R P+V+  V P     + E+L  A
Sbjct: 86  SEVQRIK----RNHPDTKIVLWGCMVGPGNQSIFQSRLPMVDHFVSPSA---VDEVLALA 138

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
                  +  Y +++    ++  D        V+  + IQ GC+  C+FCV+P  RG E 
Sbjct: 139 ------PNPIYQLDEPALPVARWD-----HPPVSVHVPIQYGCNMSCSFCVIPLRRGRER 187

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR L+++V+E R+++  G  EITLLGQ V++W G  L G +   +DLL ++ EI GL+RL
Sbjct: 188 SRPLAEIVEECRRIVARGAKEITLLGQIVDSW-GHDLPG-RPDLADLLRAVHEIPGLLRL 245

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+ TSHP  M+D LI A  +L   MP ++LPVQ+G D +LK M R +T   YR++I +IR
Sbjct: 246 RFLTSHPAWMTDRLIAAVAELPRCMPDINLPVQAGDDALLKIMRRGYTVQRYRELIAKIR 305

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM----L 379
              P +++++D IVG PGET + F  T  L+D+I + +     +SPR GT  + M     
Sbjct: 306 DAIPHVSLTTDVIVGHPGETRERFEGTKRLLDEIRFDKVHIAAFSPRPGTRAAEMELDPA 365

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV 439
             V E  K  R + L++   +     N   + Q +EVL+E  G+ KGK  GR+P  + V 
Sbjct: 366 LAVPEGEKQLRRIELERIQEQIATERNARFLNQTVEVLVE--GEHKGKWRGRTPGNKLVF 423

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
            +      G ++ VRI      +L G L 
Sbjct: 424 FSDPRDRTGQLVNVRIIHTGPWSLQGVLA 452


>gi|210623865|ref|ZP_03294100.1| hypothetical protein CLOHIR_02051 [Clostridium hiranonis DSM 13275]
 gi|210153291|gb|EEA84297.1| hypothetical protein CLOHIR_02051 [Clostridium hiranonis DSM 13275]
          Length = 432

 Score =  249 bits (636), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 152/442 (34%), Positives = 247/442 (55%), Gaps = 21/442 (4%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  M ++F   GYE V S + AD+ V+NTC +   +  K   ++ R++  
Sbjct: 8   TLGCKVNQYETEAMIELFEHAGYEHVQSEEYADVYVINTCTVTHMSDRKSRQYIRRVK-- 65

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
                K+  + ++ V GC +Q   EEIL     VN+V+G      + E +E      +V 
Sbjct: 66  -----KKNPNSVIAVVGCYSQVAPEEILDIEE-VNLVMGTNDRRHIVEKVEAVTCNDKVS 119

Query: 151 DTDYSVEDK-FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209
             D  ++ K FE + I      R R   AF+ IQ+GCD+FCT+C++PY RG   SR L  
Sbjct: 120 TVDDIMKVKEFEEIEITQTN-GRTR---AFMKIQDGCDRFCTYCIIPYARGRVRSRDLDN 175

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSH 269
           +V+E + L   G  E+ L G +V ++ GK +  ++    D++ +++EI G+ R+R ++  
Sbjct: 176 IVEEVKLLASKGYKEVVLTGIHVASY-GKDIKDKEVKLLDVIKAVNEIDGIERIRTSSVE 234

Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329
           P   +D  ++    ++ + P+ HL +QSG D  L  MNRR+T  EY++I+DR+R   PD+
Sbjct: 235 PILFTDEFVEEISKMNKVCPHFHLSLQSGCDATLDRMNRRYTTKEYKEIVDRLREKMPDV 294

Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK-- 387
           AI++D IVGFPGET+++F+ T + +  I  AQ   FKYSPR GTP + M  Q+D  VK  
Sbjct: 295 AITTDVIVGFPGETNEEFKQTYEFLKDIELAQMHIFKYSPRKGTPAAKMDNQIDPQVKHM 354

Query: 388 -AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHN 446
            +E+L+ L K   ++   F +  +G+ ++VL E+  K  G   G +     V   S+   
Sbjct: 355 RSEQLISLSKNNFDK---FAERFIGREMDVLFEETTK-SGNYEGLTMNYMRVEAPSEEDI 410

Query: 447 IGDIIKVRITDVKISTLYGELV 468
            G I KV+IT +K   + G L+
Sbjct: 411 SGQIRKVKITGIKEDYVEGVLI 432


>gi|21902527|ref|NP_663773.1| CDK5 regulatory subunit-associated protein 1 [Rattus norvegicus]
 gi|32129430|sp|Q9JLH6|CK5P1_RAT RecName: Full=CDK5 regulatory subunit-associated protein 1;
           AltName: Full=CDK5 activator-binding protein C42
 gi|7330738|gb|AAF60223.1|AF177477_1 CDK5 activator-binding protein [Rattus norvegicus]
 gi|45219720|gb|AAH66666.1| Cdk5rap1 protein [Rattus norvegicus]
 gi|149030944|gb|EDL85971.1| CDK5 regulatory subunit associated protein 1, isoform CRA_a [Rattus
           norvegicus]
 gi|149030945|gb|EDL85972.1| CDK5 regulatory subunit associated protein 1, isoform CRA_a [Rattus
           norvegicus]
          Length = 586

 Score =  249 bits (635), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 156/479 (32%), Positives = 252/479 (52%), Gaps = 38/479 (7%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ ++++YGCQMNV D+     +    GY R +++ +AD+I+L TC IREKA + +++ L
Sbjct: 97  RKVYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCSIREKAEQTIWNRL 156

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            +++ LK  R +    L + + GC+A+    EIL R  +V+++ GP  Y  LP LL    
Sbjct: 157 HQLKVLKAKRPRSRVPLRIGILGCMAERLKGEILNREKMVDLLAGPDAYRDLPRLLAVVE 216

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G++  +   S+++ +  +  V    +     +AF++I  GCD  C++C+VP+TRG E S
Sbjct: 217 SGQQAANVLLSLDETYADIMPVQTSPS---ATSAFVSIMRGCDNMCSYCIVPFTRGRERS 273

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT------------------ 246
           R ++ ++DE RKL + G+ E+TLLGQNVN++R         T                  
Sbjct: 274 RPVASILDEVRKLSEQGLKEVTLLGQNVNSFRDNSEVQFSSTGSANLSRGFTTNYKPKQG 333

Query: 247 ---FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
              FS LL  +S I   +R+R+T+ HP+D  D +++   +   +   +HLP QSGS R+L
Sbjct: 334 GLRFSHLLDQVSRIDPEMRIRFTSPHPKDFPDEVLQLIRERHNICKQIHLPAQSGSSRVL 393

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           ++M R ++   Y  ++  IR   P + +SSDFI GF GET+DD   T+ L+ ++ Y   F
Sbjct: 394 EAMRRGYSREAYVALVHHIREAIPGVGLSSDFITGFCGETEDDHLQTVSLLREVQYNTGF 453

Query: 364 SFKYSPRLGTPGSNML-EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422
            F YS R  T   + L + V E VK  RL  L    RE+    N   VG    VL+E   
Sbjct: 454 LFAYSMRQKTRAYHRLKDDVPEEVKLRRLEELITVFREEASKVNATSVGCTQLVLVEGFS 513

Query: 423 KEKGK-LVGRSPW-LQSVVLNSKNHNI-----------GDIIKVRITDVKISTLYGELV 468
           K     L GR+   L+ +  +++  +I           GD + V+I      TL G ++
Sbjct: 514 KRSTTDLCGRNDANLKVIFPDAEVEDITDPGLKVRAQPGDYVLVKIISASSQTLKGHIL 572


>gi|281339290|gb|EFB14874.1| hypothetical protein PANDA_006744 [Ailuropoda melanoleuca]
          Length = 567

 Score =  249 bits (635), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 153/448 (34%), Positives = 243/448 (54%), Gaps = 36/448 (8%)

Query: 18  VDQCIVPQR-FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA 76
           VD+ +  QR  ++++YGCQMNV D+     +    GY R  ++ +AD+I+L TC IREKA
Sbjct: 88  VDELLGRQRKVYLETYGCQMNVNDTEIAWSILQKSGYLRTRNLQEADVILLVTCSIREKA 147

Query: 77  AEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL 136
            + +++ L +++ LK  R++    L + + GC+A+   EEIL R  +V+++ GP  Y  L
Sbjct: 148 EQTIWNRLHQLKALKTKRLRSRVPLRIGILGCMAERLKEEILNREKMVDILAGPDAYRDL 207

Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
           P LL  A  G++  +   S+++ +  +  V    +     +AF++I  GCD  C++C+VP
Sbjct: 208 PRLLAVAESGQQAANVLLSLDETYADVMPVQTSPS---ATSAFVSIMRGCDNMCSYCIVP 264

Query: 197 YTRGIEISRSLSQVVDEARKLIDN---------GVCEITLLGQNVNAWR----------- 236
           +TRG E SR +  +++E RKL +          G+ E+TLLGQNVN++R           
Sbjct: 265 FTRGRERSRPVDSILEEVRKLSEQVKSCLGFCLGLKEVTLLGQNVNSFRDSSEVQFNNAV 324

Query: 237 ----GKGLDGE------KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV 286
                +G             F+ LL  +S I   +R+R+T+ HP+D  D +++   + D 
Sbjct: 325 STNLSRGFSTNYKPKQGGLRFAHLLDKVSRIDPEMRIRFTSPHPKDFPDEVLQLIQERDN 384

Query: 287 LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDD 346
           +   +HLP QSGS R+L++M R ++   Y ++I  IR   P +++SSDFI GF GET++D
Sbjct: 385 ICKQIHLPAQSGSSRVLEAMRRGYSREAYVELIHHIRESIPGVSLSSDFIAGFCGETEED 444

Query: 347 FRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML-EQVDENVKAERLLCLQKKLREQQVSF 405
              T+ L+ ++ Y   F F YS R  T   + L + V E VK  RL  L    RE+    
Sbjct: 445 HLQTVSLLREVQYNMGFLFAYSMRQKTRAYHRLKDDVPEEVKLRRLEELITVFREEATKA 504

Query: 406 NDACVGQIIEVLIEKHGKEKGK-LVGRS 432
           N A VG    VL+E   K     L GR+
Sbjct: 505 NMASVGCTQLVLVEGVSKRSATDLCGRN 532


>gi|195571987|ref|XP_002103982.1| GD20720 [Drosophila simulans]
 gi|194199909|gb|EDX13485.1| GD20720 [Drosophila simulans]
          Length = 583

 Score =  249 bits (635), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 152/470 (32%), Positives = 247/470 (52%), Gaps = 39/470 (8%)

Query: 32  YGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLK 91
           YGCQMN  D+  +  +    GY R    ++AD+I+L TC +R+ A +++++ L  +R +K
Sbjct: 99  YGCQMNTNDTEVVFSILKENGYLRCQEPEEADVIMLVTCAVRDGAEQRIWNRLKHLRAMK 158

Query: 92  NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR-FGKRVV 150
           N R      L + + GC+A+   E++L +   V+V+ GP +Y  LP LL  +R +G   +
Sbjct: 159 NKRSTRRHPLQLTLLGCMAERLKEKLLDQEQCVDVIAGPDSYKDLPRLLAISRHYGNSAI 218

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
           +   S+++ +  +  V          TAF++I  GCD  CT+C+VP+TRG E SR L+ +
Sbjct: 219 NVLLSLDETYADVMPVRLN---SESPTAFVSIMRGCDNMCTYCIVPFTRGRERSRPLASI 275

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK---------------------CTFSD 249
           V E + L + GV E+TLLGQNVN++R +    E+                       F+ 
Sbjct: 276 VAEVKALAEQGVKEVTLLGQNVNSYRDRSAQEEQEPLKATAVPGFSTVYKPKTGGTPFAA 335

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
           LL S+++    +R+R+T+ HP+D SD +++   D   +   LHLP QSG+ ++L+ M R 
Sbjct: 336 LLRSVAQAVPEMRIRFTSPHPKDFSDEVLEVIRDHPNVCKQLHLPAQSGNTQVLERMRRG 395

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369
           ++   Y +++  IR   PD+ +SSDFI GF GET+++F+ T+ L+ ++ Y  A+ F YS 
Sbjct: 396 YSREAYLELVQHIRQFLPDVGLSSDFICGFCGETEEEFQDTVSLIQQVQYNVAYLFAYSM 455

Query: 370 RLGTPGSNML-EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGK 427
           R  T       + V  NVK ERL  + +  RE     +    GQ   +LIE K  +    
Sbjct: 456 REKTTAHRRFKDDVPINVKNERLRRMVQIFREGATQLHRKMEGQEQLILIEGKSKRSDSH 515

Query: 428 LVGRSPWLQSVVLNS------------KNHNIGDIIKVRITDVKISTLYG 465
             GR+     V++ S            K+  +GD + VRI +     L G
Sbjct: 516 WFGRNDANIKVIVPSIEVPISGDSSARKSFGVGDFLAVRIEESNSQVLKG 565


>gi|15644897|ref|NP_207067.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Helicobacter
           pylori 26695]
 gi|2501535|sp|P56131|MIAB_HELPY RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|2313364|gb|AAD07337.1| conserved hypothetical ATP-binding protein [Helicobacter pylori
           26695]
          Length = 437

 Score =  248 bits (634), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 146/435 (33%), Positives = 240/435 (55%), Gaps = 19/435 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + ++++ GC MN  DS  +        Y+  N    ADLI++NTC +REK   K++S +G
Sbjct: 2   KVYIETMGCAMNSRDSEHLLSELSKLDYKETNDPKTADLILINTCSVREKPERKLFSEIG 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           +   +K    K G      V GC A   G +IL+++P V+ V+G +   ++ +++ + + 
Sbjct: 62  QFAKIKKPNAKIG------VCGCTASHMGADILKKAPSVSFVLGARNVSKISQVIHKEKA 115

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            +  +D D S    FE        + +K  + + L I  GCDK C +C+VP+TRG EIS 
Sbjct: 116 VEVAIDYDESAY-AFE-------FFEKKAQIRSLLNISIGCDKKCAYCIVPHTRGKEISI 167

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-GLDGEKCTFSDLLYSLSEIKGLVRLR 264
            +  ++ EA KL +NG  E+ LLGQNVN +  +   +  K  FSDLL  LSEI+G+ R+R
Sbjct: 168 PMDLILKEAEKLANNGTKELMLLGQNVNNYGARFSSEHAKVDFSDLLDKLSEIQGIERIR 227

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +T+ HP  M+D  ++       +   +H+P+QSGS  +LK M R ++   +   ++R+++
Sbjct: 228 FTSPHPLHMNDGFLERFAKNPKVCKSIHMPLQSGSSAVLKMMRRGYSKEWFLNRVERLKA 287

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           + P++ IS+D IVGFP E+D DF  TM++++K+ +   +SF YSPR  T      E+V  
Sbjct: 288 LVPEVGISTDIIVGFPNESDKDFEDTMEVLEKVRFDTLYSFIYSPRPFTEAGAWKERVPL 347

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV---GRSPWLQSVVLN 441
            V + RL  LQ + +E         VG+   VL+E   +   ++V   GRS   + + + 
Sbjct: 348 EVSSSRLERLQNRHKEILEEKAKLEVGKTHVVLVENRREMDNQIVGFEGRSDTGKFIEVT 407

Query: 442 SK-NHNIGDIIKVRI 455
            K   N G+++KV I
Sbjct: 408 CKEKRNPGELVKVEI 422


>gi|57233882|ref|YP_182095.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Dehalococcoides
           ethenogenes 195]
 gi|123618318|sp|Q3Z6Q4|MIAB_DEHE1 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|57224330|gb|AAW39387.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Dehalococcoides
           ethenogenes 195]
          Length = 418

 Score =  248 bits (634), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 157/447 (35%), Positives = 244/447 (54%), Gaps = 42/447 (9%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           +++ + GCQMN  +S R+  +F   GY   +  +DA+L+++N+C +RE A  KV + L  
Sbjct: 4   YYLWTIGCQMNQAESERLGRLFELWGYSLADKAEDAELVLVNSCVVREHAENKVINRLHI 63

Query: 87  IRNLK--NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           +R LK  N R+K      + + GC+   +   + ++ P V+ +  P     LP+  E   
Sbjct: 64  LRKLKDKNPRLK------IALTGCLVGQDIASVRKKFPFVDYIFQPGA---LPDWGE--- 111

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGY--NRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
                                +  G+    K  V+A +TI +GCD FCT+C+VPY RG E
Sbjct: 112 ---------------------IPEGFILPLKPPVSASITIMQGCDNFCTYCIVPYRRGRE 150

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SRS+S++  EA +L+  G  E+ LLGQNV+++ G  L  + C  +DLLY+LS+I GL+R
Sbjct: 151 KSRSISELCCEAAELVRRGSREVVLLGQNVDSY-GHDLPEKPC-LADLLYALSDIPGLLR 208

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+ TSHP+D+S  LI A   L  +   L LPVQ+G+D IL +M R +T+ +YR+++ R+
Sbjct: 209 IRFLTSHPKDISQKLIDAMASLHKVCHSLSLPVQAGADTILAAMRRGYTSEQYRELVGRL 268

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQ 381
           ++  PDI++ +D IVGFP ET + F  +  L+  IGY       YSPR  T  + +M + 
Sbjct: 269 KTAMPDISLQTDLIVGFPSETAEQFDQSYKLMSDIGYDAIHVAAYSPRPQTAAARDMADD 328

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           V    K  RL  ++   +E     N A V    EVL+E  G++K K  GR+   + V L 
Sbjct: 329 VPVAEKKRRLKLIEDLQKETVSKANSALVDTFAEVLVE--GRQKNKWQGRTLGGKLVFLE 386

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
           S     G +I V+I      +L  +LV
Sbjct: 387 SDLPLEGCLINVKIFKASPWSLQAKLV 413


>gi|313143333|ref|ZP_07805526.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818]
 gi|313128364|gb|EFR45981.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818]
          Length = 441

 Score =  248 bits (634), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 155/441 (35%), Positives = 247/441 (56%), Gaps = 25/441 (5%)

Query: 36  MNVYDSLRM-EDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSR 94
           MN  DS  +  ++   + Y   ++  +ADLI++NTC +REK  +K++S +G+    K S 
Sbjct: 1   MNERDSAHIIAELKEKKQYTLTDNAKEADLILINTCSVREKPEKKLFSEIGQFAKEKKSG 60

Query: 95  IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDY 154
            K G      + GC A   GEEI++++P V+ V+G +   ++ ++L+R +     V+ D 
Sbjct: 61  AKIG------ICGCTASHLGEEIIKKAPSVDFVLGARNVSKITQVLDRPK----AVEVDI 110

Query: 155 SVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEA 214
             +D     S      ++  G+ A L I  GCDK C++C+VP+TRG EIS  +  +V+EA
Sbjct: 111 DYDD-----STYVFASSQDMGIKAHLNISIGCDKKCSYCIVPFTRGKEISIPIDLLVNEA 165

Query: 215 RKLIDNGVCEITLLGQNVNAWRGK-GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
           +KL+ NG  E+ LLGQNVN +  +     +K  F++LL +LSEI+GL R+R+T+ HP  M
Sbjct: 166 KKLVANGAKELLLLGQNVNHYGVRFSTPHKKTNFTELLATLSEIEGLYRIRFTSPHPLHM 225

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
            D  ++       +   +H+P+QSGS +ILK M R +    Y   I +++S+ P++ I +
Sbjct: 226 DDEFLEEFARNPKIAKGIHIPLQSGSSQILKMMRRGYDKQWYLDRIAKLKSLLPNVGIGT 285

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG----SNMLEQVDENVKAE 389
           D IVGFP E++ DF  TM+++  + +   +SF YSPR  T       +ML  V + V  E
Sbjct: 286 DIIVGFPTESEQDFEDTMEVLSIVEFDTLYSFVYSPRPHTSAYSYDKSML--VPQEVAKE 343

Query: 390 RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV--GRSPWLQSVVLNSKNHNI 447
           RL  LQ   ++         +G I EVLIE H  ++G+    GRS   + + +  +   I
Sbjct: 344 RLSRLQNLHKQILQKKAQKEIGSIYEVLIENHRDDEGQTWSEGRSSQNKLIKILGRKCPI 403

Query: 448 GDIIKVRITDVKISTLYGELV 468
           G II+V++T      LYGE V
Sbjct: 404 GSIIQVKVTHNDGGGLYGEFV 424


>gi|221632382|ref|YP_002521603.1| (dimethylallyl)adenosine tRNA methylthiotransferase
           [Thermomicrobium roseum DSM 5159]
 gi|221157157|gb|ACM06284.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Thermomicrobium roseum
           DSM 5159]
          Length = 458

 Score =  248 bits (633), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 157/464 (33%), Positives = 245/464 (52%), Gaps = 18/464 (3%)

Query: 5   IKLIGVAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADL 64
           ++LI +    + IVD     +RF + + GCQMN  +S +   +    GY       DAD+
Sbjct: 1   MQLIQLQPAPASIVDAVPGVKRFHIWTIGCQMNEAESAKAAALLRQAGYVPAVREWDADI 60

Query: 65  IVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIV 124
           +++NTC +R++A +K   ++G +  LK  R     D+ + V GC+   +   +  R P V
Sbjct: 61  VIVNTCVVRQQAEDKALGYIGALARLKRRR----PDVRIAVTGCLVTGQERRLAERFPWV 116

Query: 125 NVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQE 184
           ++  GP  + RL  L+        + D D    D  E     D G      VTAF+ +  
Sbjct: 117 DLWYGPSEFERLVSLV------PELADVDI---DLVELPHYYDEGQADPE-VTAFVPVIY 166

Query: 185 GCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK 244
           GC+  C++C+VPY RG E SR + QVV E  KL   GV E+TLLGQ VNA+ G  L G+ 
Sbjct: 167 GCNFVCSYCIVPYRRGRERSRPVEQVVAEVEKLAARGVREVTLLGQTVNAY-GHDLPGQP 225

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304
              +DLL  + ++ G+ R+R+ TSHP+  SD LI+A  DL  +  +++LPVQSG + +L+
Sbjct: 226 -DLADLLERVHDVPGIERIRFLTSHPKYFSDKLIRAVADLPKVCEHVNLPVQSGDNEVLR 284

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
            M R +T  EYR+ I RIR + PD+ +S+D IVGFPGET++ F  T  L+++I + +   
Sbjct: 285 RMRRHYTVEEYRERIARIRELIPDVTLSTDIIVGFPGETEEQFLNTYRLLEEIRFDKVHV 344

Query: 365 FKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE 424
             YSPR GT  +   + V    K  R   +++         N+  VG+ +E+L++   + 
Sbjct: 345 AMYSPRPGTLSARWPDDVPREEKRRRHRAVEQLQERIARERNERYVGRTVEILVDGLARG 404

Query: 425 KGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           + +   R   L  V   +     G  ++VR+T      L GE V
Sbjct: 405 RWRGRTRGNTL--VFFEAPGDWRGRFVEVRVTQASPWYLLGEPV 446


>gi|145343353|ref|XP_001416312.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144576537|gb|ABO94605.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 492

 Score =  248 bits (633), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 166/486 (34%), Positives = 251/486 (51%), Gaps = 56/486 (11%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R ++++YGCQMNV DS  +  +  + G      + +A   ++NTC +R+ A  +V++   
Sbjct: 1   RVYIETYGCQMNVSDSDVVRSVLRAHGVATTEDLREATAALVNTCAVRDNAESRVWT--- 57

Query: 86  RIRNLKNSRIKEGGDLLVV-VAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           R+R LK  +   G  L  V V GC+A+    ++L    + ++V GP  Y  +P LLE + 
Sbjct: 58  RLRQLKALKRDAGHALTTVGVLGCMAERLKAKLLETEDLADLVCGPDAYRDVPRLLENS- 116

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGV-------TAFLTIQEGCDKFCTFCVVPY 197
             +R+  +D S E +   L  +D  Y   R V        A++++  GCD  C FCVVP+
Sbjct: 117 -TRRL--SDLSEEHRMNVLLSLDETYADVRPVRRDVGSPMAYVSVMRGCDNMCAFCVVPF 173

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR------------------GKG 239
           TRG E SR    VVDEAR LI  GV EITLLGQNVN++                    KG
Sbjct: 174 TRGRERSRPFESVVDEARGLIAEGVKEITLLGQNVNSYADAPMKATTSADDDPFAAYAKG 233

Query: 240 L--------DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL 291
                    +G + TF+DL+ +++ +   VR+R+T+ HP+D  D L++       +   L
Sbjct: 234 FKSVYKPKREGAR-TFADLISAVAGLDQEVRVRFTSPHPKDFPDDLLRVIAQTPNVCKQL 292

Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351
           H+P QSGS   L+ M R +T   Y  +I R R + P +A+SSDFI GF GET+D+   T+
Sbjct: 293 HMPAQSGSTSTLERMRRGYTREVYLDLIKRAREMIPGVALSSDFISGFCGETEDEHAETL 352

Query: 352 DLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACV 410
            L++ + Y QAF F YS R  T  + N+ + V E+VK  RL  +    R + +  N A V
Sbjct: 353 SLLEDVRYEQAFMFHYSLREKTHAARNLEDDVPEHVKKRRLAEVIATFRRRALEANAAEV 412

Query: 411 GQIIEVLIEKHGKE--KGKLVGRSPWLQSVVLNSKNH-----------NIGDIIKVRITD 457
           G+   VL+E   K+  + ++ GRS   + VV+  K               GD +  R+ +
Sbjct: 413 GRTHLVLVEGASKKDPEAQMSGRSDTGKRVVIQGKRAFSNSSGKEVDIKAGDYVVARVVE 472

Query: 458 VKISTL 463
              STL
Sbjct: 473 AGASTL 478


>gi|118402077|ref|XP_001033358.1| RNA modification enzyme, MiaB family [Tetrahymena thermophila]
 gi|89287706|gb|EAR85695.1| RNA modification enzyme, MiaB family [Tetrahymena thermophila
           SB210]
          Length = 604

 Score =  248 bits (633), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 144/452 (31%), Positives = 241/452 (53%), Gaps = 40/452 (8%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +++F+++YGCQMN  D+  +  +    G+ R +++D+AD++ LNTC IRE A  K++   
Sbjct: 76  KKYFIETYGCQMNESDTEIISGILQKAGFVRESNLDNADIVFLNTCAIREGAENKIWK-- 133

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER-- 142
            R+ N++  + KE   L+  V GC+A+   ++++ ++ +V+++VGP  Y  LP L++   
Sbjct: 134 -RLENIRAYKRKEKKQLITGVLGCMAERLKDKLVEKNKVVDIIVGPDAYRDLPRLIQSLD 192

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
                  ++   S+E+ +  +  V    +      AF++I  GC+  C+FC+VP+TRG E
Sbjct: 193 PSTDDYSINVQLSLEETYADIVPVRQNPD---SCQAFVSIMRGCNNMCSFCIVPFTRGRE 249

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK------------------------ 238
            SR +  +V+E + L + GV EITLLGQNVN++  K                        
Sbjct: 250 RSRDIQSIVEEVKMLANQGVKEITLLGQNVNSYFDKEAEGYEDLDHLNSEGFKETFKLRK 309

Query: 239 -------GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL 291
                   L G+   F+ LL  +++    VR R+T+ HP+D  D +++       +   L
Sbjct: 310 VIRALLNSLLGKGARFAHLLEEVAKAAPEVRFRFTSPHPKDFPDPVLQVIKKYPNIAKNL 369

Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351
           H+P QSG+  +L  M R ++   Y  ++D I+   P I +SSDFI GF GETD +F+ T+
Sbjct: 370 HMPAQSGNTEMLTRMRRNYSRENYINLVDHIKQTIPGITLSSDFICGFCGETDQEFQDTL 429

Query: 352 DLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACV 410
            L++ + Y  AF F YS R  T    +  + V E VK +RL  +     + Q   N   V
Sbjct: 430 TLLEYVKYENAFLFAYSLREKTHAHRHYQDDVPEEVKKQRLQQMIDVFHKNQELVNKQEV 489

Query: 411 GQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
           G+I  VL+E  GK + ++ GR+   + V+ NS
Sbjct: 490 GRIHLVLVEGKGKFENQIRGRTDTNKRVIFNS 521


>gi|224094881|ref|XP_002310277.1| predicted protein [Populus trichocarpa]
 gi|222853180|gb|EEE90727.1| predicted protein [Populus trichocarpa]
          Length = 623

 Score =  248 bits (633), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 167/497 (33%), Positives = 260/497 (52%), Gaps = 52/497 (10%)

Query: 22  IVPQ-RFFVKSYGCQMNVYDSLRMEDMFFSQGY-ERVNSMDDADLIVLNTCHIREKAAEK 79
           I+P+ R + ++YGCQMNV D   +  +  + GY E V+  + A++I +NTC IR+ A +K
Sbjct: 110 ILPRGRIYHETYGCQMNVNDMEIVLSIMKNAGYSEIVDVPESAEIIFINTCAIRDNAEQK 169

Query: 80  VYS------FLGR--IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ 131
           V+       FL R    N+   R +      VVV GC+A+   ++IL    +V+VV GP 
Sbjct: 170 VWQRLNYFWFLKRHWKSNVAIGRSQSHHPPKVVVLGCMAERLKDKILDADKMVDVVCGPD 229

Query: 132 TYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCT 191
            Y  LP LLE   +G++ ++T  S+E+ +  +S V    N    + AF+++  GC+  C+
Sbjct: 230 AYRDLPRLLEEVEYGQKGINTLLSLEETYADISPVRISKN---SINAFVSVMRGCNNMCS 286

Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR--------------G 237
           FC+VP+TRG E SR +  +V E  +L   GV E+TLLGQNVN++                
Sbjct: 287 FCIVPFTRGRERSRPVESIVKEVAELWKEGVKEVTLLGQNVNSYNDASEIEKEVEPGTNW 346

Query: 238 KGLDGEKCT---------FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLM 288
           K  DG   T         FSDLL  LS     +R RYT+ HP+D  D L+    +   + 
Sbjct: 347 KYSDGFSSTCKVKRVGLRFSDLLDRLSTEFPEMRFRYTSPHPKDFPDDLLYVMRNRHNIC 406

Query: 289 PYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFR 348
             +HLP Q+GS  +L+ M R +T   Y  ++ +IR + PD+ I+SDFI GF GET+++ +
Sbjct: 407 KSIHLPAQTGSSTVLERMRRGYTREAYLDLVQKIRRIIPDVGITSDFICGFCGETEEEHQ 466

Query: 349 ATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFND 407
            T+ LV  +GY  A+ F YS R  T    N ++ V + VK  RL  L +  RE      D
Sbjct: 467 DTLSLVKAVGYDMAYMFAYSMREKTHAHRNYVDDVPDEVKKRRLAELIEAFRESTGQCFD 526

Query: 408 ACVGQIIEVLIEKHGKEK--GKLVGRSPWLQSVVLN-------------SKNHNIGDIIK 452
           + +G +  VL+E   K     +L+G+S     V+               ++N  +GD ++
Sbjct: 527 SQIGSVQLVLVEGPNKRAPDTELIGKSDRGHRVLFTNLPLPNRNEDGSQARNPMVGDYVE 586

Query: 453 VRITDVKISTLYGELVV 469
           V I     ++L+G+ + 
Sbjct: 587 VLILKSTRASLFGDALA 603


>gi|289675772|ref|ZP_06496662.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Pseudomonas
           syringae pv. syringae FF5]
          Length = 267

 Score =  248 bits (633), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 126/274 (45%), Positives = 179/274 (65%), Gaps = 11/274 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ +++++GCQMN YDS RM D+    Q  E     +DAD+I+LNTC IRE+A ++VYS 
Sbjct: 3   KKLYIETHGCQMNEYDSSRMVDLLGEHQALEVTARAEDADVILLNTCSIRERAQDRVYSQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR R LK +      ++++ V GCVA  EG  I  R+P V+VV GPQT +RLPE+++ A
Sbjct: 63  LGRWRELKLA----NPEMVIAVGGCVASQEGAAIRDRAPYVDVVFGPQTLHRLPEMIDAA 118

Query: 144 RFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           R  +   VD  +   +KF+ L        R  G +A++++ EGC K+CTFCVVPYTRG E
Sbjct: 119 RVTRLPQVDVSFPEIEKFDHLP-----EPRVDGPSAYVSVMEGCSKYCTFCVVPYTRGEE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR    V+ E   L +NGV E+TLLGQNVN +RG   DG     +DL+  ++ + G+ R
Sbjct: 174 VSRPFDDVLSEVIHLAENGVREVTLLGQNVNGYRGTTHDGRVADLADLIRVVAAVDGIDR 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQ 296
           +RYTTSHP + SD LI+AH ++  L+ +LHLPVQ
Sbjct: 234 IRYTTSHPLEFSDSLIQAHAEVPELVKHLHLPVQ 267


>gi|312793464|ref|YP_004026387.1| RNA modification enzyme, miab family [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312180604|gb|ADQ40774.1| RNA modification enzyme, MiaB family [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 434

 Score =  248 bits (632), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 150/440 (34%), Positives = 248/440 (56%), Gaps = 19/440 (4%)

Query: 33  GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92
           GC++N Y++  + ++F   G+E V+    AD+ V+NTC +   +  K    + + + L  
Sbjct: 9   GCKVNQYETQAVAELFKENGFEIVDFDSKADVYVINTCTVTNISDRKSRQAIKKAKKLSP 68

Query: 93  SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR---V 149
             I       VVV GC  Q   +E+  +   V++++G +   R+ + + +    K+    
Sbjct: 69  QSI-------VVVMGCYPQVYPQEV-EKIEDVDIIIGTKDRQRIVDYVRQYLEDKKKIVA 120

Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209
           +D +Y  E  FE L I +   + +    AF+ I+EGCD+FC++C++PY RG   SRSL  
Sbjct: 121 IDGEYKRE-AFEELKISEFNEHSR----AFIKIEEGCDQFCSYCIIPYARGAVRSRSLKS 175

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSH 269
           + +E  +L+  G  E  + G N++A+ GK LDG K T  D++  +++I+G+ R+R ++  
Sbjct: 176 IEEEVVRLVQKGYKEFVITGINISAY-GKDLDG-KVTLIDVIERVNKIEGVKRIRLSSLE 233

Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329
           P  M+D  I+     D L  +LHL +QSGSD+ILK MNR +T  +Y+ I+DRIR    D+
Sbjct: 234 PVIMNDEFIERLLGFDKLCHHLHLSLQSGSDKILKLMNRHYTTAQYQGIVDRIREKWEDV 293

Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAE 389
           A ++D IVGFPGET++DF AT++ V KIG+++   F++SP+ GT   +M  QVD   K  
Sbjct: 294 AFTTDIIVGFPGETEEDFNATLEFVQKIGFSRIHVFRFSPKKGTKAYDMPNQVDSKEKER 353

Query: 390 RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS-PWLQSVVLNSKNHNIG 448
           R   +++        F+   VG  +EVLIE+     G   G S  +++++V  S     G
Sbjct: 354 RSKIMKEVAANLAYQFHKKFVGNWLEVLIEQDSDFDGYYEGYSGNYIRTLVRKSHMIVPG 413

Query: 449 DIIKVRITDVKISTLYGELV 468
           +I KV+IT      + GE++
Sbjct: 414 EIYKVKITQAYEQYVKGEII 433


>gi|309789580|ref|ZP_07684161.1| RNA modification enzyme, MiaB family [Oscillochloris trichoides
           DG6]
 gi|308228316|gb|EFO81963.1| RNA modification enzyme, MiaB family [Oscillochloris trichoides
           DG6]
          Length = 450

 Score =  248 bits (632), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 154/451 (34%), Positives = 238/451 (52%), Gaps = 33/451 (7%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +R++V + GCQMN+ DS R+E      GY      + A  IVLN+C +R  A E++   L
Sbjct: 22  RRYYVWTVGCQMNISDSERLEAALQGVGYSPAARPEQASFIVLNSCSVRASAEERIIGKL 81

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRS-PIVNVVVGPQTYYRLPELLERA 143
           G +  +K    +E  D +VV+ GC+       I  R  P+V+  V P     +  L    
Sbjct: 82  GELVRVK----RENPDTIVVLWGCMVGPHNRSIFERQLPMVDHFVSPSAVDAVVAL---- 133

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
                  +  Y++++    L + D  +     V   + IQ GC+  C++CV+P  RG E 
Sbjct: 134 -----APNPIYTLDEPA--LPVRDAAHP---PVAVHVPIQYGCNMRCSYCVIPQRRGRER 183

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SRSL ++V E  +++D+G  EI LLGQ V++W G  L G +   +DL+ ++  I GL+RL
Sbjct: 184 SRSLDEIVAEVTRIVDHGAREIVLLGQIVDSW-GHDLPG-RPQLADLIRAVHAIPGLLRL 241

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+ TSHP  M+D LI+    L   MP ++LPVQ+GSDR+L  M R +T   YR +I RIR
Sbjct: 242 RFLTSHPAWMTDHLIETVASLPRCMPEINLPVQAGSDRVLALMQRGYTTARYRDLIARIR 301

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ-- 381
           +  P I++++D IVG PGE++ DF  T+ L ++I + +     +S R   PG+   EQ  
Sbjct: 302 AAIPHISLTTDIIVGHPGESEADFAQTLALCEEIRFDKIHIAAFSAR---PGTVAAEQEA 358

Query: 382 -----VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQ 436
                V E  K  R + +++         +   +GQ +EVL+E  G+ +GK  GRSP  +
Sbjct: 359 DPSLAVSEEQKQARRIAMEQLHERIATQRSAMLLGQTVEVLVE--GESRGKWRGRSPGNK 416

Query: 437 SVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
            V  +      G + +V IT     +L G L
Sbjct: 417 LVFFSDAADWTGRLARVHITQTSPWSLQGRL 447


>gi|32129446|sp|Q96SZ6|CK5P1_HUMAN RecName: Full=CDK5 regulatory subunit-associated protein 1;
           AltName: Full=CDK5 activator-binding protein C42
 gi|56205140|emb|CAI19393.1| CDK5 regulatory subunit associated protein 1 [Homo sapiens]
 gi|119596731|gb|EAW76325.1| CDK5 regulatory subunit associated protein 1, isoform CRA_h [Homo
           sapiens]
          Length = 601

 Score =  247 bits (631), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 158/502 (31%), Positives = 265/502 (52%), Gaps = 53/502 (10%)

Query: 17  IVDQCIVPQR-FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREK 75
           ++D+ +  QR  ++++YGCQMNV D+     +    GY R +++ +AD+I+L TC IREK
Sbjct: 91  MMDELLGRQRKVYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCSIREK 150

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135
           A + +++ L +++ LK  R +    L + + GC+A+   EEIL R  +V+++ GP  Y  
Sbjct: 151 AEQTIWNRLHQLKALKTRRPRSRVPLRIGILGCMAERLKEEILNREKMVDILAGPDAYRD 210

Query: 136 LPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
           LP LL  A  G++  +   S+++ +  +  V    +     +AF++I  GCD  C++C+V
Sbjct: 211 LPRLLAVAESGQQAANVLLSLDETYADVMPVQTSAS---ATSAFVSIMRGCDNMCSYCIV 267

Query: 196 PYTRGIEISRSLSQVVDEARKLIDN--------------GVCEITLLGQNVNAWR----- 236
           P+TRG E SR ++ +++E +KL +               G+ E+TLLGQNVN++R     
Sbjct: 268 PFTRGRERSRPIASILEEVKKLSEQVFLPPRPPKVLGLQGLKEVTLLGQNVNSFRDNSEV 327

Query: 237 ----------GKGLDGEKCT------FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKA 280
                      +G      T      F+ LL  +S +   +R+R+T+ HP+D  D +++ 
Sbjct: 328 QFNSAVPTNLSRGFTTNYKTKQGGLRFAHLLDQVSRVDPEMRIRFTSPHPKDFPDEVLQL 387

Query: 281 HGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFP 340
             + D +   +HLP QSGS R+L++M R ++   Y +++  IR   P +++SSDFI GF 
Sbjct: 388 IHERDNICKQIHLPAQSGSSRVLEAMRRGYSREAYVELVHHIRESIPGVSLSSDFIAGFC 447

Query: 341 GETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML-EQVDENVKAERLLCLQKKLR 399
           GET++D   T+ L+ ++ Y   F F YS R  T   + L + V E VK  RL  L    R
Sbjct: 448 GETEEDHVQTVSLLREVQYNMGFLFAYSMRQKTRAYHRLKDDVPEEVKLRRLEELITIFR 507

Query: 400 EQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPW-LQSVVLNSKNHNI---------- 447
           E+    N   VG    VL+E   K     L GR+   L+ +  +++  ++          
Sbjct: 508 EEATKANQTSVGCTQLVLVEGLSKRSATDLCGRNDGNLKVIFPDAEMEDVNNPGLRVRAQ 567

Query: 448 -GDIIKVRITDVKISTLYGELV 468
            GD + V+IT     TL G ++
Sbjct: 568 PGDYVLVKITSASSQTLRGHVL 589


>gi|254778972|ref|YP_003057077.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Helicobacter
           pylori B38]
 gi|254000883|emb|CAX28819.1| Putative tRNA-i(6)A37 modification enzyme MiaB [Helicobacter pylori
           B38]
          Length = 437

 Score =  247 bits (631), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 149/449 (33%), Positives = 245/449 (54%), Gaps = 23/449 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + ++++ GC MN  DS  +        Y+  +    ADLI++NTC +REK   K++S +G
Sbjct: 2   KVYIETMGCAMNSRDSEHLLSELSKLDYKETSDPKTADLILINTCSVREKPERKLFSEIG 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           +   +K    K G      V GC A   G +IL+++P V+ V+G +   ++ +++ + + 
Sbjct: 62  QFAKIKKPNAKIG------VCGCTASHMGADILKKAPSVSFVLGARNVSKISQVIHKEKA 115

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            +  +D D S    FE        + +K  + + L I  GCDK C +C+VP+TRG EIS 
Sbjct: 116 VEVAIDYDESAY-AFE-------FFEKKAQIRSLLNISIGCDKKCAYCIVPHTRGKEISI 167

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-GLDGEKCTFSDLLYSLSEIKGLVRLR 264
            +  ++ EA KL +NG  E+ LLGQNVN +  +   +  K  FSDLL  LSEI+G+ R+R
Sbjct: 168 PMDLILKEAEKLANNGTKELMLLGQNVNNYGARFSSEHAKVDFSDLLDKLSEIQGIERIR 227

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +T+ HP  M+D  ++       +   +H+P+QSGS  +LK M R ++   +   ++R+++
Sbjct: 228 FTSPHPLHMNDAFLERFAKNPKVCKSIHMPLQSGSSAVLKMMRRGYSKEWFLNRVERLKA 287

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           + P++ IS+D IVGFP E+D DF  TM++++K+ +   +SF YSPR  T      E+V  
Sbjct: 288 LVPEVGISTDIIVGFPNESDKDFEDTMEVLEKVRFDTLYSFIYSPRPFTEAGAWKERVPL 347

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV---GRSPWLQSVVLN 441
            V + RL  LQ + +E         VG+   VL+E   +   ++V   GRS   + + + 
Sbjct: 348 EVSSSRLERLQNRHKEILEEKAKLEVGKTHVVLVENRREMDNQIVGFEGRSDTGKFIEVT 407

Query: 442 SK-NHNIGDIIKVRITDVKISTLYGELVV 469
            K   N G+++KV I    IS   G L+ 
Sbjct: 408 CKEKRNPGELVKVEI----ISHSKGRLIA 432


>gi|168008611|ref|XP_001757000.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162691871|gb|EDQ78231.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 523

 Score =  247 bits (631), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 163/481 (33%), Positives = 250/481 (51%), Gaps = 43/481 (8%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGY-ERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + +V++YGCQMNV D   +  +    GY E V + +++D+I +NTC IRE A  K++  L
Sbjct: 31  KLYVETYGCQMNVNDMEIVLAIMKDSGYTEIVQTPEESDIIFINTCAIRENAEHKIWHRL 90

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
              ++LK+   +      V V GC+A+   E+++    +V+VV GP  Y  LP LL    
Sbjct: 91  NYFKHLKSRATRPAKPPKVAVLGCMAERLKEKLIVADKMVDVVCGPDAYRDLPRLLSLVD 150

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G+  ++T  S+E+ +  +S V    N    VTAF+++  GC+  C+FC+VP+TRG E S
Sbjct: 151 EGQTGINTLLSLEETYADVSPVRIAKN---SVTAFVSVMRGCNNMCSFCIVPFTRGRERS 207

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG-LDGEK------------------- 244
           R +S +  E  +L + GV E+ LLGQNVN++     +DG                     
Sbjct: 208 RPVSSIAREVSELWEQGVKEVILLGQNVNSYNDTSEIDGGDENAKYMSTLSPGFSTIYKT 267

Query: 245 ----CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300
                +F+ LL  LS     +R R+T+ HP+D  D L+    D   +   +HLP QSGS 
Sbjct: 268 KELGLSFAHLLDVLSSQYPEMRFRFTSPHPKDFPDDLLFLMRDRPNICNMVHLPAQSGST 327

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
           R+L+ M R +T   Y   +DRIR + PD++ISSDFI GF GET++D + T+ LV ++GY 
Sbjct: 328 RVLERMRRGYTREAYLACVDRIRMIIPDVSISSDFISGFCGETEEDHQDTLKLVAEVGYD 387

Query: 361 QAFSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419
            A+ F YS R  T    N  + V E VK  RL  +    RE  +    + +  +  VL+E
Sbjct: 388 MAYMFAYSMREKTHAHRNYEDDVPEPVKNRRLAEMITTFRETTLPRFTSQLQTMQLVLVE 447

Query: 420 KHGK--EKGKLVGRSPWLQSVVLNS------------KNHNIGDIIKVRITDVKISTLYG 465
              K   + +LVG+S     V+                +   GD ++V IT+   ++L G
Sbjct: 448 GPNKRAPETELVGKSDKGHRVIFPKVPVMDGLSAAEMVDLKPGDFVEVYITETTHASLRG 507

Query: 466 E 466
           E
Sbjct: 508 E 508


>gi|229890682|sp|Q17YC7|MIAB_HELAH RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
          Length = 439

 Score =  247 bits (631), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 153/450 (34%), Positives = 245/450 (54%), Gaps = 25/450 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + ++++ GC MN  DS  +        Y+  N    ADLI++NTC +REK   K++S +G
Sbjct: 3   KVYIETMGCAMNSRDSEHLLSELSKLDYKETNDPKIADLILINTCSVREKPERKLFSEIG 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           +   +K    K G      V GC A   G +IL++SP V+ V+G +   ++ +++ + + 
Sbjct: 63  QFAKIKKPNAKIG------VCGCTASHMGADILKKSPSVSFVLGARNVSKISQVIHKEKA 116

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            +  +D D S        S     + +K  V + L I  GCDK CT+C+VP+TRG EIS 
Sbjct: 117 VEVAIDYDES--------SYAFEFFEKKAEVRSLLNISIGCDKKCTYCIVPHTRGKEISI 168

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE--KCTFSDLLYSLSEIKGLVRL 263
            +  ++ EA KL +NG  E+ LLGQNVN + G     E  K  FSDLL  LSEI G+ R+
Sbjct: 169 PMDLILKEAEKLANNGTKELMLLGQNVNNY-GVRFSSEHAKVNFSDLLDKLSEIPGIERI 227

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+T+ HP  M+D  ++       +   +H+P+QSGS  +LK M R +    +   +++++
Sbjct: 228 RFTSPHPLHMNDEFLERFAKNPKVCKSIHMPLQSGSSAVLKMMRRGYNKEWFLNRVEKLK 287

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           ++ P++ IS+D IVGFP E+D DF  TM++++K+ +   +SF YSPR  T      E+V 
Sbjct: 288 ALVPEVGISTDIIVGFPNESDKDFEDTMEVLEKVCFDTLYSFIYSPRPFTEAGAWKERVP 347

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV---GRSPWLQSVVL 440
             V + RL  LQ + +E         VG+   VL+E   +  G++V   GRS   + + +
Sbjct: 348 LEVSSLRLERLQNRHKEILEEKARLEVGKTHVVLVENRHEVDGQIVGFEGRSDTGKFIEV 407

Query: 441 NSK-NHNIGDIIKVRITDVKISTLYGELVV 469
             K   N G++++V I    IS + G L+ 
Sbjct: 408 TCKEKRNPGELVEVEI----ISHVKGRLMA 433


>gi|303229106|ref|ZP_07315908.1| MiaB-like protein [Veillonella atypica ACS-134-V-Col7a]
 gi|302516230|gb|EFL58170.1| MiaB-like protein [Veillonella atypica ACS-134-V-Col7a]
          Length = 435

 Score =  247 bits (630), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 146/424 (34%), Positives = 237/424 (55%), Gaps = 18/424 (4%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N YD+  M+ +F    YE V+    AD+ V+NTC +     +K        R L
Sbjct: 12  TLGCRVNQYDTDAMKGLFLQHDYEAVDFDSKADIYVINTCSVTNMGEKKS-------RQL 64

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
                ++  D  V+V GC AQ + + I      VN+V+G     ++ EL+E+    +R +
Sbjct: 65  IRKAKRQNQDAYVIVTGCYAQLDPDAIAAIDG-VNLVIGTNNRSKIVELVEQLETTERQI 123

Query: 151 DT--DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           +   D   E  FE + +     ++ R   AF+ IQEGC+ +C FC++PYTRG   SR + 
Sbjct: 124 NAVRDIMKESNFEEMPLFGNESDKSR---AFMKIQEGCNNYCAFCIIPYTRGKLKSRKVD 180

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
            +V+EA++L+++G  EI L G ++  + G  L G + T +D++ +L EI  L R+R+ + 
Sbjct: 181 DIVNEAKRLVEHGFHEIVLTGIHLGNY-GVELPG-RPTLADVVKALLEIPNLHRIRFGSI 238

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
              ++SD LI+       + P+LHLP+Q+GSD +L  M R +T  EY+ +I  +R+  PD
Sbjct: 239 ESVEVSDELIELMATDKRVCPHLHLPLQAGSDHVLTLMKRHYTLQEYKDLIKNLRNRIPD 298

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           ++I++D I GFP ETD+DF  TM+ V +IG+    +F YS R GTP + M  QV E VK 
Sbjct: 299 LSITTDIIAGFPQETDEDFDETMNTVKEIGFTHIHAFPYSIREGTPAATMPNQVPEAVKK 358

Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG-RSPWLQSVVLNSKNHNI 447
            R+  L     +   ++  + +G+  E+LIEK  +E G   G  + ++   V +   H+I
Sbjct: 359 ARVALLNDLSEKGLHAYATSRIGKPGEILIEK--EENGYYTGLTNEYIHGRVKSDGQHSI 416

Query: 448 GDII 451
           GD+I
Sbjct: 417 GDLI 420


>gi|328872998|gb|EGG21365.1| hypothetical protein DFA_01246 [Dictyostelium fasciculatum]
          Length = 636

 Score =  247 bits (630), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 160/488 (32%), Positives = 256/488 (52%), Gaps = 71/488 (14%)

Query: 28  FVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRI 87
           FV+SYGCQMN  D+  +  +    GY   +S   AD+I LNTC IRE A +K++  L  +
Sbjct: 134 FVESYGCQMNFADTEVIYAVMKQSGYIIADSAKSADVIFLNTCAIRENAEDKIWFRLTEL 193

Query: 88  RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147
           R  K  +  +GG++++ V GC+A+   +++L     V++VVGP  Y  LP LL R   G+
Sbjct: 194 RKQKRVKRSQGGNMVIGVLGCMAERLKQKLLDSKNSVDLVVGPDAYRSLPALLGRIEDGQ 253

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
             ++   S ++ +  ++ V    N   G+ A+++I  GC+  C++C+VP+TRG E SR L
Sbjct: 254 TAINVMLSADETYADIAPVRHDSN---GLCAYVSIMRGCNNMCSYCIVPFTRGRERSRPL 310

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRG-KGLDGEKC--------------------- 245
             ++DE ++L   G  EITLLGQNVN++    G+D E                       
Sbjct: 311 ESILDEVKQLSKTGYKEITLLGQNVNSYNYIPGVDAETSSEQVEQKDNKMEKEKLQPREG 370

Query: 246 ------------TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHL 293
                       TF++L+ ++S +   +R+R+T+ HP+D  D LI+       +    H+
Sbjct: 371 FNTIYKSPKKGITFTELMDAVSLVDPEMRVRFTSPHPKDFPDSLIELVKVRPNICRQFHI 430

Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
           P QSG+  +L+ M R +T   Y ++ID I+   PD +ISSDFI GF GET+ + R T+ L
Sbjct: 431 PAQSGNSDVLERMRRGYTRESYIELIDLIKRELPDCSISSDFISGFCGETEQEHRDTISL 490

Query: 354 VDKIGYAQAFSFKYSPRLGTPGS-NMLEQVDENVKAERL--------LCLQKKLREQQVS 404
           ++ +GY  A+ F YS R  T    +M + V E+VKA RL         C+++K +++   
Sbjct: 491 MEYVGYENAYMFAYSLREKTHAHRSMKDDVTEDVKARRLKEVIDTYYKCIREKSKDE--- 547

Query: 405 FNDACVGQIIEVLIEKHGKEKG-KLVGRS--------PWLQSVVLNSKNHN------IGD 449
                +G+   VL+E+  +  G   VGR+        P +   V +  N+N      +GD
Sbjct: 548 -----LGKKHLVLVERQSRRSGDHFVGRTDSNKKCIVPMID--VTDPTNNNESTPIKLGD 600

Query: 450 IIKVRITD 457
            + V I D
Sbjct: 601 YVMVEIID 608


>gi|303232181|ref|ZP_07318884.1| MiaB-like protein [Veillonella atypica ACS-049-V-Sch6]
 gi|302513287|gb|EFL55326.1| MiaB-like protein [Veillonella atypica ACS-049-V-Sch6]
          Length = 431

 Score =  247 bits (630), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 144/424 (33%), Positives = 238/424 (56%), Gaps = 18/424 (4%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N YD+  M+ +F    YE V+    AD+ V+NTC +     +K    + + +  
Sbjct: 8   TLGCRVNQYDTDAMKGLFLQHDYEAVDFDSKADIYVINTCSVTNMGEKKSRQLIRKAK-- 65

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
                ++  D  V+V GC AQ + + I      VN+V+G     ++ EL+E+    +R +
Sbjct: 66  -----RQNQDAYVIVTGCYAQLDPDAIAAIDG-VNLVIGTNNRSKIVELVEQLETTERQI 119

Query: 151 DT--DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           +   D   E  FE + +     ++ R   AF+ IQEGC+ +C FC++PYTRG   SR + 
Sbjct: 120 NAVRDIMKESNFEEMPLFGNESDKSR---AFMKIQEGCNNYCAFCIIPYTRGKLKSRKVD 176

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
            +V+EA++L+++G  EI L G ++  + G  L G + T +D++ +L EI  L R+R+ + 
Sbjct: 177 DIVNEAKRLVEHGFHEIVLTGIHLGNY-GVELPG-RPTLADVVKALLEIPNLHRIRFGSI 234

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
              ++SD LI+       + P+LHLP+Q+GSD +L  M R +T  EY+ +I  +R+  PD
Sbjct: 235 ESVEVSDELIELMATDKRVCPHLHLPLQAGSDHVLTLMKRHYTLQEYKDLIKNLRNRIPD 294

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           ++I++D I GFP ETD+DF  TM+ V +IG+    +F YS R GTP + M  QV E VK 
Sbjct: 295 LSITTDIIAGFPQETDEDFDETMNTVKEIGFTHIHAFPYSIREGTPAATMPNQVPEAVKK 354

Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG-RSPWLQSVVLNSKNHNI 447
            R+  L     +   ++  + +G+  E+LIEK  +E G   G  + ++   V +   H+I
Sbjct: 355 ARVALLNDLSEKGLHAYATSRIGKPGEILIEK--EENGYYTGLTNEYIHGRVKSDGQHSI 412

Query: 448 GDII 451
           GD+I
Sbjct: 413 GDLI 416


>gi|62857473|ref|NP_001017192.1| CDK5 regulatory subunit associated protein 1 [Xenopus (Silurana)
           tropicalis]
          Length = 569

 Score =  247 bits (630), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 159/480 (33%), Positives = 253/480 (52%), Gaps = 41/480 (8%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + ++++YGCQMNV D+     +    GY R  +  +AD+I+L TC +REKA + +++ L 
Sbjct: 82  KIYLETYGCQMNVNDTEIAWSILQQNGYVRTYTEAEADVILLVTCSVREKAEQTIWNRLQ 141

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           ++  LK  R K    + + + GC+A+   +EIL +  +V++V GP  Y  LP LL  A  
Sbjct: 142 QLAALKRKRSK-TSRMRIGLLGCMAERLKQEILDKENLVDLVAGPDAYRDLPRLLSVAET 200

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G++V +   SV++ +  +  V    + K   +AF++I  GCD  CT+C+VP+TRG E SR
Sbjct: 201 GQQVANVLLSVDETYADIMPVHTSASSK---SAFVSIMRGCDNMCTYCIVPFTRGRERSR 257

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWR----GKGLDGEKCTFS------------- 248
            L  +++E R L   GV E+TLLGQNVN++R     +  + E    S             
Sbjct: 258 PLQSILEEVRMLSSQGVKEVTLLGQNVNSYRDTSSAQFPNAESPPLSRGFSTIYKHKKGG 317

Query: 249 ----DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304
               DLL  +S+I   +R+R+T+ HP+D  D +++   +   +   +H+P QSGS+++L+
Sbjct: 318 LRFVDLLDKVSQIDPEMRIRFTSPHPKDFPDEVLQLIAERHNICKQIHIPAQSGSNKVLE 377

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
           +M R ++   Y  +I  I+   P +++SSDFI GF  ET++D   T+ L+  + Y  AF 
Sbjct: 378 TMRRGYSREVYLDLIQNIQESIPGVSLSSDFITGFCEETEEDHLQTLSLLRTVSYNAAFL 437

Query: 365 FKYSPRLGTPGSNMLE-QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK 423
           F YS R  T   + L+  V + VK  RL  L    RE+    N   VG    VL+E   K
Sbjct: 438 FAYSMRKKTRAYHRLQDDVPQEVKQRRLAELIAVFREEAGRVNQRAVGSTQLVLVEGPSK 497

Query: 424 EKG-KLVGRSPWLQSVVL------------NSKNHNI--GDIIKVRITDVKISTLYGELV 468
               +L GR+     V+             NS  + I  GD + V+IT     +L G L+
Sbjct: 498 RSPEELCGRNDGNTKVIFSEAPIVGGLAQENSLQNRIQSGDYVLVKITSSSSQSLKGTLL 557


>gi|317181612|dbj|BAJ59396.1| putative ATP-binding protein [Helicobacter pylori F57]
          Length = 437

 Score =  247 bits (630), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 146/435 (33%), Positives = 239/435 (54%), Gaps = 19/435 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + ++++ GC MN  DS  +        Y+  +    ADLI++NTC +REK   K++S +G
Sbjct: 2   KVYIETMGCAMNSRDSEHLLSELSKLDYKETSDPKAADLILINTCSVREKPERKLFSEIG 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           +   +K    K G      V GC A   G +IL+++P V+ V+G +   ++ +++ + + 
Sbjct: 62  QFAKIKKPNAKIG------VCGCTASHMGADILKKAPSVSFVLGARNVSKISQVIHKEKA 115

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            +  +D D S    FE        + +K  + + L I  GCDK C +C+VP+TRG EIS 
Sbjct: 116 VEVAIDYDESAY-AFE-------FFEKKAQIRSLLNISIGCDKKCAYCIVPHTRGKEISI 167

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-GLDGEKCTFSDLLYSLSEIKGLVRLR 264
            +  ++ EA KL  NG  E+ LLGQNVN +  +   D  K  FSDLL  LSEI+G+ R+R
Sbjct: 168 PMDLILKEAEKLASNGTKELMLLGQNVNNYGARFSSDHAKVDFSDLLDKLSEIQGIERIR 227

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +T+ HP  M+D  ++       +   +H+P+QSGS  +LK M R ++   +   ++R+++
Sbjct: 228 FTSPHPLHMNDAFLERFAKNPKVCKSIHMPLQSGSSAVLKMMRRGYSKEWFLNRVERLKA 287

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           + P++ IS+D IVGFP E+D DF  TM++++K+ +   +SF YSPR  T      E+V  
Sbjct: 288 LVPEVGISTDIIVGFPNESDKDFEDTMEVLEKVHFDTLYSFIYSPRPFTEAGAWKERVPL 347

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV---GRSPWLQSVVLN 441
            V + RL  LQ + +E         VG+   VL+E   +   ++V   GRS   + + + 
Sbjct: 348 EVSSSRLERLQNRHKEILEEKAKLEVGKTHVVLVENGREIDNQIVGFEGRSDTGKFIEVA 407

Query: 442 SK-NHNIGDIIKVRI 455
            K   N G+++KV I
Sbjct: 408 CKEKRNPGELVKVEI 422


>gi|134300331|ref|YP_001113827.1| RNA modification protein [Desulfotomaculum reducens MI-1]
 gi|134053031|gb|ABO51002.1| RNA modification enzyme, MiaB family [Desulfotomaculum reducens
           MI-1]
          Length = 436

 Score =  246 bits (629), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 158/447 (35%), Positives = 237/447 (53%), Gaps = 24/447 (5%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           + + GC++N Y+S  + D+F   GYE V+    AD  V+NTC +      K    + R  
Sbjct: 7   IYTLGCKVNQYESSAIADLFRQAGYEIVDFEQHADAYVINTCTVTHMGDRKSRQIIRRAS 66

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
                  K+    ++ V GC AQ    E+L   P V++VVG +   R+ +L+E    GK 
Sbjct: 67  -------KQNPAAVITVTGCYAQTSPGEVLE-IPGVDLVVGTKDKSRIVQLVEAYSRGKG 118

Query: 149 VVDT--DYSVEDKFERLSI-VDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            V+   D    D FE L +  + G  R     AFL IQEGC+ FC +C++PY RG   SR
Sbjct: 119 PVNAVDDIMQTDCFEELPVPTEQGKTR-----AFLKIQEGCNSFCAYCIIPYARGPVRSR 173

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
               V+  A +LI  G  EI L G ++ A+ G+   G+      L+  L+++ GL RLR 
Sbjct: 174 LPENVLSSAEELIQQGFQEIVLTGIHIGAY-GQDFTGKDIDLGWLVERLAKLPGLTRLRL 232

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
            +  P D+++ LIKA  +   +  +LH+P+QSG D IL  M RR+   ++  +I +I  +
Sbjct: 233 GSVEPHDINNALIKAVSEHPNVCRHLHIPLQSGDDEILALMGRRYNTQQFTDLIHKINQI 292

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P IAI+SD IVGFPGET + F+ T+  V++ G+A    FKYSPR GTP + M +QV   
Sbjct: 293 MPGIAITSDIIVGFPGETQEHFQNTLKTVERSGFAGIHVFKYSPRKGTPAAEMTDQVAPQ 352

Query: 386 VKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSVVLN 441
            K ER   L+ L  +L  Q   F    VG+ ++VL+E+ + K+   L G +     V+  
Sbjct: 353 DKEERSKSLIELGNRLAHQ---FAQQQVGKELKVLVEQPYEKDPNLLEGHTDTYLKVLFP 409

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                 G +++V I  VK STL G ++
Sbjct: 410 GDTGLKGQMVRVHIQGVKESTLKGRII 436


>gi|325106271|ref|YP_004275925.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Pedobacter saltans DSM
           12145]
 gi|324975119|gb|ADY54103.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Pedobacter saltans DSM
           12145]
          Length = 473

 Score =  246 bits (629), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 159/456 (34%), Positives = 256/456 (56%), Gaps = 25/456 (5%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ +V+SYGCQMN  DS  +  +    G+   +   +AD++ +NTC IRE A  +V +  
Sbjct: 31  RKLYVESYGCQMNFSDSEIVASILSDAGFVTTSDYKEADVVFINTCSIRENAEIRVRN-- 88

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R++    S++++  D+L+ V GC+A+    + L    IV++VVGP  Y  LP L+ +  
Sbjct: 89  -RLKEFGASKVRKP-DMLIGVLGCMAERLKSKFLEEEKIVDLVVGPDAYRDLPNLIGKVD 146

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G + V+   S E+ +  ++ V    N   G+TAF++I  GCD  C+FCVVP+TRG E S
Sbjct: 147 EGNKAVNVLLSREETYADINPVRLNSN---GITAFISIMRGCDNMCSFCVVPFTRGRERS 203

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD---GEKCTFSDLLYSLSEIKGLV 261
           R    ++ EA+ L + G  E+TLLGQNV++++ K  D    E   F+ LL  ++ +   +
Sbjct: 204 RDPHSIIKEAQDLFNAGYREVTLLGQNVDSYKWKASDEENAESVNFAQLLEKVALVHPDL 263

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R++TSHP+D++D ++      + +  Y+HLPVQSG+ R+L+ MNR +    Y + I+ 
Sbjct: 264 RVRFSTSHPKDITDDVLYTMAKYENICKYIHLPVQSGNSRVLEVMNRTYDREWYMEKINA 323

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML-E 380
           IR + P+ AIS+D I GF  ET+++ + T+ + + + Y  A+ F YS R GTP +    +
Sbjct: 324 IRRILPECAISTDIITGFCTETEEEHQETLSMQEFVKYDFAYMFSYSERPGTPAAKKFTD 383

Query: 381 QVDENVKAERL---LCLQKK---LREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSP 433
            V E VK  RL   + LQ+     R QQ       +G++ +VLIE    K K    GR+ 
Sbjct: 384 DVPEAVKKRRLEEVIALQQTHGYYRLQQ------HIGKVEKVLIEGFSRKSKEDYCGRND 437

Query: 434 WLQSVVLN-SKNHNIGDIIKVRITDVKISTLYGELV 468
               VV   S  +  G  + V I     +TL G++V
Sbjct: 438 QNCMVVFPVSDAYKPGQYVNVLIERATSATLIGKVV 473


>gi|89272073|emb|CAJ81315.1| CDK5 regulatory subunit associated protein 1 [Xenopus (Silurana)
           tropicalis]
          Length = 625

 Score =  246 bits (628), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 159/480 (33%), Positives = 253/480 (52%), Gaps = 41/480 (8%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + ++++YGCQMNV D+     +    GY R  +  +AD+I+L TC +REKA + +++ L 
Sbjct: 138 KIYLETYGCQMNVNDTEIAWSILQQNGYVRTYTEAEADVILLVTCSVREKAEQTIWNRLQ 197

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           ++  LK  R K    + + + GC+A+   +EIL +  +V++V GP  Y  LP LL  A  
Sbjct: 198 QLAALKRKRSKTS-RMRIGLLGCMAERLKQEILDKENLVDLVAGPDAYRDLPRLLSVAET 256

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G++V +   SV++ +  +  V    + K   +AF++I  GCD  CT+C+VP+TRG E SR
Sbjct: 257 GQQVANVLLSVDETYADIMPVHTSASSK---SAFVSIMRGCDNMCTYCIVPFTRGRERSR 313

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWR----GKGLDGEKCTFS------------- 248
            L  +++E R L   GV E+TLLGQNVN++R     +  + E    S             
Sbjct: 314 PLQSILEEVRMLSSQGVKEVTLLGQNVNSYRDTSSAQFPNAESPPLSRGFSTIYKHKKGG 373

Query: 249 ----DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304
               DLL  +S+I   +R+R+T+ HP+D  D +++   +   +   +H+P QSGS+++L+
Sbjct: 374 LRFVDLLDKVSQIDPEMRIRFTSPHPKDFPDEVLQLIAERHNICKQIHIPAQSGSNKVLE 433

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
           +M R ++   Y  +I  I+   P +++SSDFI GF  ET++D   T+ L+  + Y  AF 
Sbjct: 434 TMRRGYSREVYLDLIQNIQESIPGVSLSSDFITGFCEETEEDHLQTLSLLRTVSYNAAFL 493

Query: 365 FKYSPRLGTPGSNMLE-QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK 423
           F YS R  T   + L+  V + VK  RL  L    RE+    N   VG    VL+E   K
Sbjct: 494 FAYSMRKKTRAYHRLQDDVPQEVKQRRLAELIAVFREEAGRVNQRAVGSTQLVLVEGPSK 553

Query: 424 EKG-KLVGRSPWLQSVVL------------NSKNHNI--GDIIKVRITDVKISTLYGELV 468
               +L GR+     V+             NS  + I  GD + V+IT     +L G L+
Sbjct: 554 RSPEELCGRNDGNTKVIFSEAPIVGGLAQENSLQNRIQSGDYVLVKITSSSSQSLKGTLL 613


>gi|317180074|dbj|BAJ57860.1| putative ATP-binding protein [Helicobacter pylori F32]
          Length = 437

 Score =  246 bits (628), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 150/450 (33%), Positives = 246/450 (54%), Gaps = 25/450 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + ++++ GC MN  DS  +        Y+  +    ADLI++NTC +REK   K++S +G
Sbjct: 2   KVYIETMGCAMNSRDSEHLLSELSKLDYKETSDPKTADLILINTCSVREKPERKLFSEIG 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           +   +K    K G      V GC A   G +IL+++P V+ V+G +   ++ +++ + + 
Sbjct: 62  QFAKIKKPNAKIG------VCGCTASHMGADILKKAPSVSFVLGARNVSKISQVIHKEKA 115

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            +  +D D S    FE        + +K  + + L I  GCDK CT+C+VP+TRG EIS 
Sbjct: 116 VEVAIDYDESAY-AFE-------FFEKKAQIRSLLNISIGCDKKCTYCIVPHTRGKEISI 167

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-GLDGEKCTFSDLLYSLSEIKGLVRLR 264
            +  ++ EA KL  NG  E+ LLGQNVN +  +   +  K  FSDLL  LSEI+G+ R+R
Sbjct: 168 PMDLILKEAEKLASNGTKELMLLGQNVNNYGARFSSEHAKVDFSDLLDKLSEIQGIERIR 227

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +T+ HP  M+D  ++       +   +H+P+QSGS  +LK M R ++   +   ++R+++
Sbjct: 228 FTSPHPLHMNDAFLERFAKNPKVCKSIHMPLQSGSSAVLKMMRRGYSKEWFLNRVERLKA 287

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           + P++ IS+D IVGFP E+D DF  TM++++K+ +   +SF YSPR  T      E+V  
Sbjct: 288 LVPEVGISTDIIVGFPNESDKDFEDTMEVLEKVRFDTLYSFIYSPRPFTEAGAWKERVPL 347

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV----GRSPWLQSVVL 440
            V + RL  LQ + +E         VG+   VL+E +G+E    +    GRS   + + +
Sbjct: 348 EVSSSRLERLQNRHKEILEEKAKLEVGKTHVVLVE-NGREINNQIVGFEGRSDTGKFIEV 406

Query: 441 NSK-NHNIGDIIKVRITDVKISTLYGELVV 469
             K   N G++++V I    IS   G L+ 
Sbjct: 407 ACKEKRNPGELVRVEI----ISHSKGRLIA 432


>gi|150390794|ref|YP_001320843.1| RNA modification protein [Alkaliphilus metalliredigens QYMF]
 gi|149950656|gb|ABR49184.1| RNA modification enzyme, MiaB family [Alkaliphilus metalliredigens
           QYMF]
          Length = 433

 Score =  246 bits (628), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 154/451 (34%), Positives = 256/451 (56%), Gaps = 26/451 (5%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +R    + GC++N Y++  M ++F   GY  V   + AD+ V+NTC +     +K   F+
Sbjct: 2   KRVAFHTLGCKVNQYETQAMTELFEGSGYHLVKDTEIADVYVINTCTVTNVGDKKSRQFI 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R +       +   D ++VV GC AQ   E++L     VN+V+G     ++ E++E   
Sbjct: 62  RRAK-------RNNPDGIIVVVGCYAQTAPEKVLDIEG-VNIVIGTNERNKIVEIVEGCS 113

Query: 145 FGKRV-VDTDYSVEDKFERLSIVD-GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
              +V V  D     KFE +++ +  G  R     AFL IQEGC+++C +C++PY RG  
Sbjct: 114 ADSKVNVVDDIMKIKKFEEMTVQEMHGKTR-----AFLKIQEGCNQYCAYCIIPYARGPI 168

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR   +++ E + L++NG  E+ L G +V ++ GK L G+     D+L  ++ I+GL R
Sbjct: 169 RSRGKIEIIQEVQTLVNNGFKEVVLTGIHVASY-GKDL-GDHEGLLDVLKRVNAIEGLER 226

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R ++  P   SD  + A   L+ +  + HL +QSGSD+ LK MNR++T+  YR+ + RI
Sbjct: 227 IRLSSLEPTLFSDAFLSALSKLEKICDHFHLSLQSGSDKTLKKMNRKYTSQMYRETVKRI 286

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R   P +A+++D IVGFPGETD DF+ + D V+++ +++   FKYSPR GTP +   +Q+
Sbjct: 287 RHYYPLVALTTDIIVGFPGETDVDFQTSYDFVEEMAFSEIHVFKYSPREGTPAAQFDDQI 346

Query: 383 D---ENVKAERLLCLQKKL-REQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSPWLQS 437
           D   ++ ++E+L+ L  +L +E Q+ F D    Q +EVL+E + G+++  L G +     
Sbjct: 347 DGITKHERSEKLIELGDRLKKEYQLQFID----QRMEVLLEGQSGQDQNLLEGFTTNHLK 402

Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           V+L SK    G +  V+I  +  S L G L+
Sbjct: 403 VLLASKQGKEGMLQDVQIDKIMDSGLLGHLL 433


>gi|317177084|dbj|BAJ54873.1| putative ATP-binding protein [Helicobacter pylori F16]
          Length = 437

 Score =  246 bits (627), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 145/435 (33%), Positives = 240/435 (55%), Gaps = 19/435 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + ++++ GC MN  DS  +        Y+  +    ADLI++NTC +REK   K++S +G
Sbjct: 2   KVYIETMGCAMNSRDSEHLLSELSKLDYKETSDPKAADLILINTCSVREKPERKLFSEIG 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           +   +K    K G      V GC A   G +IL+++P V+ V+G +   ++ +++ + + 
Sbjct: 62  QFAKIKKPNAKIG------VCGCTASHMGSDILKKAPSVSFVLGARNVSKISQVIHKEKA 115

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            +  +D D S    FE        + +K  + + L I  GCDK CT+C+VP+TRG EIS 
Sbjct: 116 VEVAIDYDESAY-AFE-------FFEKKAQIRSLLNISIGCDKKCTYCIVPHTRGKEISI 167

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-GLDGEKCTFSDLLYSLSEIKGLVRLR 264
            +  ++ EA KL +NG  E+ LLGQNVN +  +   +  K  FSDLL  LSEI+G+ R+R
Sbjct: 168 PMDLILKEAEKLANNGTKELMLLGQNVNNYGARFSNEHAKVDFSDLLDKLSEIQGIERIR 227

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +T+ HP  M D  ++       +   +H+P+QSGS  +LK M R ++   +   ++R+++
Sbjct: 228 FTSPHPLHMDDAFLERFAKNPKVCKSIHMPLQSGSSTVLKMMRRGYSKEWFLNRVERLKA 287

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           + P++ IS+D IVGFP E+D DF  TM++++K+ +   +SF YSPR  T      E+V  
Sbjct: 288 LVPEVGISTDIIVGFPNESDKDFEDTMEVLEKVRFDTLYSFIYSPRPFTEAGAWKERVPL 347

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV---GRSPWLQSVVLN 441
            V + RL  LQ + +E         VG+   VL+E   +   ++V   GRS   + + + 
Sbjct: 348 EVSSSRLERLQNRHKEILEEKAKLEVGKTHVVLVENRREINNQIVGFEGRSDTGKFIEVA 407

Query: 442 SK-NHNIGDIIKVRI 455
            K   N G++++V I
Sbjct: 408 CKEKRNPGELVRVEI 422


>gi|317012111|gb|ADU82719.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Helicobacter
           pylori Lithuania75]
          Length = 437

 Score =  246 bits (627), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 151/450 (33%), Positives = 244/450 (54%), Gaps = 25/450 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + ++++ GC MN  DS  +        Y+  +    ADLI++NTC +REK   K++S +G
Sbjct: 2   KVYIETMGCAMNSRDSEHLLSELSKLDYKETSDPKTADLILINTCSVREKPERKLFSEIG 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           +   +K    K G      V GC A   G +IL+++P V+ V+G +   ++ +++ + + 
Sbjct: 62  QFAKIKKPNAKIG------VCGCTASHMGADILKKAPSVSFVLGARNVSKISQVIHKEKA 115

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            +  +D D S    FE        + +K  + + L I  GCDK C +C+VP+TRG EIS 
Sbjct: 116 VEVAIDYDESAY-AFE-------FFEKKAQIRSLLNISIGCDKKCAYCIVPHTRGKEISI 167

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE--KCTFSDLLYSLSEIKGLVRL 263
            +  ++ EA KL +NG  E+ LLGQNVN + G     E  K  FSDLL  LSEI G+ R+
Sbjct: 168 PMDLILKEAEKLANNGTKELMLLGQNVNNY-GVRFSSEHAKVDFSDLLDKLSEISGIERI 226

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+T+ HP  M+D  ++       +   +H+P+QSGS  +LK M R ++   +   ++R++
Sbjct: 227 RFTSPHPLHMNDAFLERFAKNPKVCKSIHMPLQSGSSAVLKMMRRGYSKEWFLNRVERLK 286

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           ++ P++ IS+D IVGFP E+D DF  TM++++K+ +   +SF YSPR  T      E+V 
Sbjct: 287 ALVPEVGISTDIIVGFPNESDKDFEDTMEVLEKVRFDTLYSFIYSPRPFTEAGAWKERVP 346

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV---GRSPWLQSVVL 440
             V + RL  LQ + +E         VG+   VL+E   +   ++V   GRS   + + +
Sbjct: 347 LEVSSSRLERLQNRHKEILEEKAKLEVGKTHVVLVENRREMDNQIVGFEGRSDTGKFIEV 406

Query: 441 NSK-NHNIGDIIKVRITDVKISTLYGELVV 469
             K   N G+++KV I    IS   G L+ 
Sbjct: 407 TCKEKRNPGELVKVEI----ISHSKGRLIA 432


>gi|14042133|dbj|BAB55120.1| unnamed protein product [Homo sapiens]
          Length = 395

 Score =  246 bits (627), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 137/398 (34%), Positives = 228/398 (57%), Gaps = 26/398 (6%)

Query: 17  IVDQCIVPQR-FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREK 75
           ++D+ +  QR  ++++YGCQMNV D+     +    GY R +++ +AD+I+L TC IREK
Sbjct: 1   MMDELLGRQRKVYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCSIREK 60

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135
           A + +++ L +++ LK  R +    L + + GC+A+   EEIL R  +V+++ GP  Y  
Sbjct: 61  AEQTIWNRLHQLKALKTRRPRSRVPLRIGILGCMAERLKEEILNREKMVDILAGPDAYRD 120

Query: 136 LPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
           LP LL  A  G++  +   S+++ +  +  V    +     +AF++I  GCD  C++C+V
Sbjct: 121 LPRLLAVAESGQQAANVLLSLDETYADVMPVQTSAS---ATSAFVSIMRGCDNMCSYCIV 177

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG---------------KGL 240
           P TRG E SR ++  ++E +KL + G+ E+TLLGQNVN++RG               +G 
Sbjct: 178 PLTRGRERSRPIASTLEEVKKLSEQGLKEVTLLGQNVNSFRGNSEVQFNSAVPTNLSRGF 237

Query: 241 DGEKCT------FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP 294
                T      F+ LL  +S +   +R+R+T+ HP+D  D +++   + D +   +HLP
Sbjct: 238 TTNYKTKQGGLRFAHLLDQVSRVDPEMRIRFTSPHPKDFPDEVLQLIHERDNICKQIHLP 297

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
            QSGS R+L++M R ++   Y +++  IR   P +++SSDFI GF GET++D   T+ L+
Sbjct: 298 AQSGSSRVLEAMRRGYSREAYVELVHHIRESIPGVSLSSDFIAGFCGETEEDHVQTVSLL 357

Query: 355 DKIGYAQAFSFKYSPRLGTPGSNML-EQVDENVKAERL 391
            ++ Y   F F YS R  T   + L + V E VK  RL
Sbjct: 358 REVQYNMGFLFAYSMRQKTRAYHRLKDDVPEEVKLRRL 395


>gi|288922654|ref|ZP_06416830.1| RNA modification enzyme, MiaB family [Frankia sp. EUN1f]
 gi|288346012|gb|EFC80365.1| RNA modification enzyme, MiaB family [Frankia sp. EUN1f]
          Length = 326

 Score =  246 bits (627), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 140/337 (41%), Positives = 197/337 (58%), Gaps = 14/337 (4%)

Query: 36  MNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRI 95
           MNV+DS R+  +  S GY       DAD++V NTC +RE A  ++Y  LG +   K    
Sbjct: 1   MNVHDSERLAGLLESAGYVPAAQGADADVVVFNTCAVRENADNRLYGNLGHLYPTK---- 56

Query: 96  KEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYS 155
           K    + + V GC+AQ +   IL R+P V+VV G    +RLP LLERAR      +    
Sbjct: 57  KNNPGMQIAVGGCLAQKDRSVILDRAPWVDVVFGTHNLHRLPVLLERARH-----NAAAQ 111

Query: 156 VEDKFERLSIVDGGYNRKRGV--TAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           VE   E L +       +R    +A+++I  GCD  CTFC+VP  RG E  R    V+ E
Sbjct: 112 VEIA-EALEVFPSSLPARRASHHSAWVSISVGCDNTCTFCIVPSLRGGERDRRPGDVLAE 170

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
              L+  G  EITLLGQNVN++ G+ L G+   F+ LL +   I+GL R+R+T+ HPRD 
Sbjct: 171 VEALVAEGALEITLLGQNVNSY-GRSL-GDPGAFARLLRACGNIEGLERVRFTSPHPRDF 228

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
           +D +I+A      + P LH+P+QSGSD +L+ M R +    +  I++R+R   P  AI++
Sbjct: 229 TDDVIEAMAQTPNVCPQLHMPLQSGSDAVLRRMRRSYRRERFLGIVERVREAIPHAAITT 288

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370
           D IVGFPGET++DF  T+D+V    +A AF+FKYSPR
Sbjct: 289 DIIVGFPGETEEDFADTLDVVRAARFAGAFTFKYSPR 325


>gi|328787511|ref|XP_393868.4| PREDICTED: CDK5RAP1-like protein-like [Apis mellifera]
          Length = 596

 Score =  246 bits (627), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 159/479 (33%), Positives = 254/479 (53%), Gaps = 45/479 (9%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           Q+ + + YGCQMNV D+  +  +  S GY++V  + +A++I+  TC IR+ A +K+++ L
Sbjct: 110 QKVYFEVYGCQMNVNDTEVIWSILKSHGYKKVEDIKEANIILFITCSIRDNAEQKIWNRL 169

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             + +L+    K+   + + + GC+A+   ++IL R  +V+V+ GP +Y  LP LL    
Sbjct: 170 TDLNHLRKK--KKKNPIKIGLLGCMAERLKDKILERGKLVDVIAGPDSYKDLPRLLSIPD 227

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
             +  ++   S ++ +  ++ V    N     +AF+TI  GCD  CT+C+VP+TRG E S
Sbjct: 228 -NETAINVVLSFDETYADITPVRLNPN---STSAFVTIMRGCDNMCTYCIVPFTRGRERS 283

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWR---------------GKGLD-------- 241
           R +  +V E + L D+GV EI LLGQNVN++R                KG          
Sbjct: 284 RPIESIVKEIQSLSDDGVKEIVLLGQNVNSYRDMSQLKLYTNMETHLAKGFKTVYKNKKG 343

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
           G +  F DLL  +S I   +R+R+T+ HP+D  D +++   +   +   +HLP QSG+ R
Sbjct: 344 GRR--FCDLLDEVSRINPEMRIRFTSPHPKDFPDEVLQLIAERPNICKEIHLPAQSGNSR 401

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
           IL+ M R +T   Y  ++  IR + P+I +SSDFI GF GET+++F+ T+ L++ I Y +
Sbjct: 402 ILEKMRRGYTREAYIDLVHHIRQIIPNIYLSSDFITGFCGETEEEFQDTLSLIELIKYNK 461

Query: 362 AFSFKYSPRLGTPGSNMLE-QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
           AF F YS R  T      +  V  NVK  RL  +  K R +    N   +GQ   VL+EK
Sbjct: 462 AFLFSYSMREKTTAHRRYQDDVPPNVKQNRLERMISKYRTEAEKLNKLQIGQSQLVLVEK 521

Query: 421 -----HGKEKGKLVGRS----PWLQSVV----LNSKNHNIGDIIKVRITDVKISTLYGE 466
                H   + K  G +    P +   +     + K   IGD + V+I +    TL G+
Sbjct: 522 PSKRSHDSFQTKNDGNTRVIIPSMSIPIGKHSRDEKPIKIGDYVVVKIENANFQTLMGK 580


>gi|332662143|ref|YP_004444931.1| (dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Haliscomenobacter hydrossis DSM 1100]
 gi|332330957|gb|AEE48058.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Haliscomenobacter hydrossis DSM 1100]
          Length = 481

 Score =  245 bits (626), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 160/449 (35%), Positives = 252/449 (56%), Gaps = 17/449 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + F+++SYGCQMN  DS  +  +    G++   +++ ADLI++NTC IREKA E V   L
Sbjct: 40  KHFYIESYGCQMNFSDSEIVASILAEVGFKPTRNLELADLILVNTCSIREKAEETVRKRL 99

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
                +K  R K G   LV V GC+A+    + L    +V++VVGP  Y  LP+L+  A 
Sbjct: 100 RIFDAIK--RQKPG--TLVGVLGCMAERLKSKFLEEERLVDLVVGPDAYRDLPKLVATAE 155

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G + V+   S E+ +  +S +       +GV+AF++I  GCD  C+FCVVP+TRG E S
Sbjct: 156 DGDKGVNVFLSREETYADISPLRLD---SKGVSAFISIMRGCDNMCSFCVVPFTRGRERS 212

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK-CTFSDLLYSLSEIKGLVRL 263
           R    ++ EA++L + G  E+TLLGQNV++++    + E    F+ LL  ++ +   +R+
Sbjct: 213 RDAFSILAEAQELYERGYREVTLLGQNVDSYKWTNPETETLVNFAHLLEMVALVAPDLRV 272

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R++TSHP+D+++ ++        +  Y+HLPVQSG+  +L+ MNR +    Y + I+ IR
Sbjct: 273 RFSTSHPKDITNEVLHTIAKYPNICKYIHLPVQSGNSNVLERMNRTYDREWYMERIEAIR 332

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML-EQV 382
            + PD AISSD I GF  ET+ + + T+ +++   Y+ ++ F YS R GT  +    + +
Sbjct: 333 QIIPDCAISSDIIAGFCSETEAEHQDTLSMIEFADYSMSYMFFYSERPGTLAARKYPDDI 392

Query: 383 DENVKAERLLCLQKKLREQ-QVSF--NDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSV 438
              VK  R   LQ+ +  Q QVS+  N   VG++ EVLIE    K +    GR+   + +
Sbjct: 393 TLEVKKRR---LQEIINLQSQVSYRHNQRDVGKVYEVLIEGDSRKSEQDFCGRNSQNKMI 449

Query: 439 VLNS-KNHNIGDIIKVRITDVKISTLYGE 466
           V      +  G  I V I     +TL GE
Sbjct: 450 VFPKVPGYQPGQYINVLIKAASSATLIGE 478


>gi|317179336|dbj|BAJ57124.1| putative ATP-binding protein [Helicobacter pylori F30]
          Length = 437

 Score =  245 bits (626), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 144/435 (33%), Positives = 240/435 (55%), Gaps = 19/435 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + ++++ GC MN  DS  +        Y+  +    ADLI++NTC +REK   K++S +G
Sbjct: 2   KVYIETMGCAMNSRDSEHLLSELSKLDYKETSDPKVADLILINTCSVREKPERKLFSEIG 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           +   +K    K G      V GC A   G +IL+++P V+ V+G +   ++ +++ + + 
Sbjct: 62  QFAKIKKPNAKIG------VCGCTASHMGADILKKAPSVSFVLGARNVSKISQVIHKEKA 115

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            +  +D D S    FE        + +K  + + L I  GCDK C +C+VP+TRG EIS 
Sbjct: 116 VEVAIDYDESAY-AFE-------FFEKKAQIRSLLNISIGCDKKCAYCIVPHTRGKEISI 167

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-GLDGEKCTFSDLLYSLSEIKGLVRLR 264
            +  ++ EA KL  NG  E+ LLGQNVN +  +   +  K  FSDLL  LSEI+G+ R+R
Sbjct: 168 PMDLILKEAEKLASNGTKELMLLGQNVNNYGARFSSEHAKVDFSDLLDKLSEIQGIERIR 227

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +T+ HP  M+D  ++       +   +H+P+QSGS  +LK M R ++   +   ++R+++
Sbjct: 228 FTSPHPLHMNDAFLERFAKNPKVCKSIHMPLQSGSSAVLKMMRRGYSKEWFLNRVERLKA 287

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           + P++ IS+D IVGFP E+D DF  TM++++K+ +   +SF YSPR  T      E+V  
Sbjct: 288 LVPEVGISTDIIVGFPNESDKDFEDTMEVLEKVRFDTLYSFIYSPRPFTEAGAWKERVPL 347

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV---GRSPWLQSVVLN 441
            V + RL  LQ + +E         VG+   VL+E   +   ++V   GRS   + + + 
Sbjct: 348 EVSSSRLERLQNRHKEILEEKAKLEVGKTHVVLVENRREINNQIVGFEGRSDTGKFIEVA 407

Query: 442 SK-NHNIGDIIKVRI 455
            K   N+G++++V I
Sbjct: 408 CKEKRNLGELVRVEI 422


>gi|312622481|ref|YP_004024094.1| RNA modification enzyme, miab family [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312202948|gb|ADQ46275.1| RNA modification enzyme, MiaB family [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 434

 Score =  245 bits (626), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 148/440 (33%), Positives = 248/440 (56%), Gaps = 19/440 (4%)

Query: 33  GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92
           GC++N Y++  + ++F   G+E V+    AD+ V+NTC +   +  K    + + + L  
Sbjct: 9   GCKVNQYETQAVAELFKESGFEIVDFDSKADVYVINTCTVTNISDRKSRHAIKKAKKLSP 68

Query: 93  SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR---V 149
             I       VVV GC  Q   +E+  +   V++++G +   ++ + + +    K+    
Sbjct: 69  QSI-------VVVMGCYPQVYPQEV-EKIEDVDIIIGTKDRQKIVDYVRQYLEDKKKIVA 120

Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209
           ++ DY  E  FE L I +  +N +    AF+ I+EGCD+FC++C++PY RG   SRSL  
Sbjct: 121 INEDYKRE-AFEELKISE--FNERS--RAFIKIEEGCDQFCSYCIIPYARGAVRSRSLKS 175

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSH 269
           + +E  +L+  G  E  + G N++++ GK LDG K T  D++  +++I+G+ R+R ++  
Sbjct: 176 IEEEVIRLVQKGYKEFVITGINISSY-GKDLDG-KVTLIDVIERVNKIEGVKRIRLSSLE 233

Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329
           P  M+   I+     D L  +LHL +QSGSD+ILK MNR +T  +Y+ I+DRIR    D+
Sbjct: 234 PVIMNGEFIERLLSFDKLCHHLHLSLQSGSDKILKLMNRHYTTAQYQSIVDRIREKWDDV 293

Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAE 389
           A ++D IVGFPGET++DF AT+D V KIG+++   F++SP+ GT    M  QVD   K  
Sbjct: 294 AFTTDIIVGFPGETEEDFNATLDFVQKIGFSRIHVFRFSPKKGTKAYEMPNQVDSKEKER 353

Query: 390 RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS-PWLQSVVLNSKNHNIG 448
           R   +++        F+   VG+ +EVLIE+     G   G S  ++++++  S     G
Sbjct: 354 RSKIMKEVAASLSYQFHSKFVGKTLEVLIEQDSDFDGYYEGYSGNYIRTLIRKSHMIVHG 413

Query: 449 DIIKVRITDVKISTLYGELV 468
           +I KV+IT      + GE++
Sbjct: 414 EIYKVKITQAYRQYVKGEII 433


>gi|313893435|ref|ZP_07827007.1| tRNA methylthiotransferase YqeV [Veillonella sp. oral taxon 158
           str. F0412]
 gi|313442076|gb|EFR60496.1| tRNA methylthiotransferase YqeV [Veillonella sp. oral taxon 158
           str. F0412]
          Length = 431

 Score =  245 bits (626), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 146/424 (34%), Positives = 240/424 (56%), Gaps = 18/424 (4%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N YD+  M+ +F    YE V+  + AD+ V+NTC +     +K        R L
Sbjct: 8   TLGCRVNQYDTDAMKGLFLQNNYEAVDFDEKADIYVINTCSVTNMGEKKS-------RQL 60

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
                ++  D  V+V GC AQ + + I      VN+V+G     ++ EL+E+    +R +
Sbjct: 61  IRKAKRQNEDAYVIVTGCYAQLDPDAIAAIDG-VNLVIGTNNRSKIVELVEQLESTERQI 119

Query: 151 DT--DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           +   D   E  FE + +     ++ R   AF+ IQEGC+ +C+FC++PYTRG   SR + 
Sbjct: 120 NAVRDIMKESNFEEMPLFGNESDKAR---AFMKIQEGCNNYCSFCIIPYTRGKLKSRKIE 176

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
            +V+EA++L+D+G  EI L G ++  + G  L G + T +D++ +L EI  L R+R+ + 
Sbjct: 177 DIVEEAKRLVDHGFHEIVLTGIHLGNY-GVELPG-RPTLADVVKALLEIPELYRIRFGSI 234

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
              ++SD L++       + P LHLP+Q+GSD +LK M R +T  EY+ +I ++RS   D
Sbjct: 235 ESVEVSDELVELMDTDKRVCPNLHLPLQAGSDHVLKLMRRHYTLQEYKDLIAKLRSRIKD 294

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           ++I++D I GFP ETD+DF  T++ V +IG+    +F YS R GTP + M +QV E VK 
Sbjct: 295 LSITTDIIAGFPQETDEDFEETLNTVREIGFTHIHAFPYSIREGTPAATMPDQVPEAVKK 354

Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG-RSPWLQSVVLNSKNHNI 447
            R+  L    +    ++  + +G+  E+LIEK  +E G  +G  + ++   V +   H I
Sbjct: 355 TRVALLNGLSQAGYEAYAKSRIGKPGEILIEK--EENGYYMGLTNEYVNGKVKSDGAHKI 412

Query: 448 GDII 451
           GD+I
Sbjct: 413 GDLI 416


>gi|307636963|gb|ADN79413.1| tRNA-i:6:A37 methylthiotransferase [Helicobacter pylori 908]
 gi|325995554|gb|ADZ50959.1| tRNA-i(6)A37 methylthiotransferase [Helicobacter pylori 2018]
          Length = 437

 Score =  245 bits (626), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 151/450 (33%), Positives = 246/450 (54%), Gaps = 25/450 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + ++++ GC MN  DS  +        Y+  +    ADLI++NTC +REK   K++S +G
Sbjct: 2   KVYIETMGCAMNSRDSEHLLSELSKLDYKETSDPKMADLILINTCSVREKPERKLFSEIG 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           +   +K    K G      V GC A   G +IL+++P V+ V+G +   ++ +++ + + 
Sbjct: 62  QFAKIKKPNAKIG------VCGCTASHMGADILKKAPSVSFVLGARNVSKISQVIHKEKA 115

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            +  +D D S    FE        + +K  + + L I  GCDK C +C+VP+TRG EIS 
Sbjct: 116 VEVAIDYDESAY-AFE-------FFEKKAQIRSLLNISIGCDKKCAYCIVPHTRGKEISI 167

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE--KCTFSDLLYSLSEIKGLVRL 263
            +  ++ EA KL +NG  E+ LLGQNVN + G     E  K  FSDLL  LSEI+G+ R+
Sbjct: 168 PMDLILKEAEKLANNGTKELMLLGQNVNNY-GVRFSSEHAKVGFSDLLDKLSEIQGIERI 226

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+T+ HP  M+D  ++       +   +H+P+QSGS  +LK M R ++   +   ++R++
Sbjct: 227 RFTSPHPLHMNDEFLERFAKNPKVCKSIHMPLQSGSSAVLKMMRRGYSKEWFLNRVERLK 286

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           ++ P++ IS+D IVGFP E+D DF  TM++++K+ +   +SF YSPR  T      E+V 
Sbjct: 287 ALVPEVGISTDIIVGFPNESDKDFEDTMEVLEKVRFDTLYSFIYSPRPFTEAGAWKERVP 346

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV---GRSPWLQSVVL 440
             V + RL  LQ + +E         VG+   VL+E   +  G++V   GRS   + + +
Sbjct: 347 LEVSSSRLERLQNRHKEILEEKAKLEVGKTHVVLVENRREMDGQIVGFEGRSDTGKFIEV 406

Query: 441 NSK-NHNIGDIIKVRITDVKISTLYGELVV 469
             K   N G++++V I    IS   G L+ 
Sbjct: 407 TCKEKRNPGELVRVEI----ISHSKGRLIA 432


>gi|323141892|ref|ZP_08076753.1| tRNA methylthiotransferase YqeV [Phascolarctobacterium sp. YIT
           12067]
 gi|322413639|gb|EFY04497.1| tRNA methylthiotransferase YqeV [Phascolarctobacterium sp. YIT
           12067]
          Length = 437

 Score =  245 bits (626), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 156/443 (35%), Positives = 244/443 (55%), Gaps = 20/443 (4%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N  D+  ME +F + GYE V   + AD+ ++NTC +      K        R +
Sbjct: 8   TLGCKVNQADTASMEGIFRASGYEVVPFGEPADVYLVNTCVVTNTGQRKS-------RQI 60

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
            N  ++     LVVV GC  Q   EE+ R    V+V++G Q   R+ EL+E A   KR  
Sbjct: 61  INRAVRHNPLSLVVVTGCYPQTAPEEV-RAIEGVDVIIGNQERGRIVELVEEALEHKRTE 119

Query: 151 DTD----YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
             D     +V+ KFE L +  G    K    AFL IQEGC+++CT+C++P+ RG   SRS
Sbjct: 120 ILDNVQQMTVDTKFEELGV--GTETDK--TRAFLKIQEGCNQYCTYCIIPFARGPLRSRS 175

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL--DGEKCTFSDLLYSLSEIKGLVRLR 264
           L  + +E  KL+  G  E+ L+G ++  + GK L  +G+  T  D + +   ++G+ R+R
Sbjct: 176 LDSIREEVGKLVAAGYKEVVLIGIHLGCY-GKELAKEGKHVTLYDAVKAALSVEGVQRVR 234

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
             +    ++   L++   +   L  +LHLP+QSG D+IL++M+R +    + ++++ IR+
Sbjct: 235 LGSLESVEVEPRLLQLMAEEPRLQRHLHLPLQSGCDKILRAMHRPYDTKRFTELVNEIRA 294

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             PD+AI++D IVGFPGE ++DF  T++   K G+A+   F YS R GTP + M EQVDE
Sbjct: 295 QVPDVAITTDVIVGFPGENEEDFATTLEFAKKCGFAKMHIFPYSKRKGTPAAEMKEQVDE 354

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
            VK+ER   L K   E       + VG++ EVL E+   ++       P+L+ VV+    
Sbjct: 355 AVKSERAARLAKVDEELHQQMLQSTVGKVEEVLFEQPVDDEHMEGLCGPYLR-VVVPGTA 413

Query: 445 HNIGDIIKVRITDVKISTLYGEL 467
                I+KV+IT +K   L GEL
Sbjct: 414 ELANTIVKVKITGIKEDFLLGEL 436


>gi|108562696|ref|YP_627012.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Helicobacter
           pylori HPAG1]
 gi|122386728|sp|Q1CUN4|MIAB_HELPH RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|107836469|gb|ABF84338.1| conserved hypothetical ATP-binding protein [Helicobacter pylori
           HPAG1]
          Length = 437

 Score =  245 bits (625), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 152/450 (33%), Positives = 244/450 (54%), Gaps = 25/450 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + ++++ GC MN  DS  +        Y+  N    ADLI++NTC +REK   K++S +G
Sbjct: 2   KVYIETMGCAMNSRDSEHLLSELSKLDYKETNDPKIADLILINTCSVREKPERKLFSEIG 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           +   +K    K G      V GC A   G +IL+++P V+ V+G +   ++ +++ + + 
Sbjct: 62  QFAKIKKPNAKIG------VCGCTASHMGADILKKAPSVSFVLGARNVSKISQVIHKEKA 115

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            +  +D D S    FE        + +K  + + L I  GCDK C +C+VP+TRG EIS 
Sbjct: 116 VEVAIDYDESAY-AFE-------FFEKKAQIRSLLNISIGCDKKCAYCIVPHTRGKEISI 167

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE--KCTFSDLLYSLSEIKGLVRL 263
            +  ++ EA KL +NG  E+ LLGQNVN + G     E  K  FSDLL  LSEI+G+ R+
Sbjct: 168 PMDLILKEAEKLANNGTKELMLLGQNVNNY-GVRFSSEHAKVDFSDLLDKLSEIQGIERI 226

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+T+ HP  M+D  ++       +   +H+P+QSGS  +LK M R ++   +   ++R++
Sbjct: 227 RFTSPHPLHMNDGFLERFAKNPKVCKSIHMPLQSGSSAVLKMMRRGYSKEWFLNRVERLK 286

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           ++ P++ IS+D IVGFP E+D DF  TM++++K+ +   +SF YSPR  T      E+V 
Sbjct: 287 ALVPEVGISTDIIVGFPNESDKDFEDTMEVLEKVRFDTLYSFIYSPRPFTEAGAWKERVP 346

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV---GRSPWLQSVVL 440
             V   RL  LQ + +E         VG+   VL+E   +   ++V   GRS   + + +
Sbjct: 347 LEVSYSRLERLQNRHKEILEEKAKLEVGKTHVVLVENRREMDNQIVGFEGRSDTGKFIEV 406

Query: 441 NSK-NHNIGDIIKVRITDVKISTLYGELVV 469
             K   N G+++KV I    IS   G L+ 
Sbjct: 407 TCKEKRNPGELVKVEI----ISHSKGRLIA 432


>gi|270308549|ref|YP_003330607.1| tRNA I(6) A37 thitransferase miaB family [Dehalococcoides sp. VS]
 gi|270154441|gb|ACZ62279.1| tRNA I(6) A37 thitransferase miaB family [Dehalococcoides sp. VS]
          Length = 418

 Score =  245 bits (625), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 155/447 (34%), Positives = 243/447 (54%), Gaps = 42/447 (9%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           +++ + GCQMN  +S R+  +F   GY   +  +DA+L+++N+C +RE A  KV + L  
Sbjct: 4   YYLWTIGCQMNQAESERLGRLFELWGYSPADKAEDAELVLVNSCVVREHAENKVINRLHL 63

Query: 87  IRNLK--NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           +R LK  NSR+K      + + GC+   +   I ++ P ++ + GP              
Sbjct: 64  LRKLKDKNSRLK------IALTGCLVGQDISSIRKKFPFIDYIFGPG------------- 104

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGY--NRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
                     S+ D  E    +  G+    K  V+A +TI +GCD FCT+CVVPY RG E
Sbjct: 105 ----------SIPDWHE----IPQGFILPLKPPVSASVTIMQGCDNFCTYCVVPYRRGRE 150

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR+++++  EA +L+  G  E+ LLGQNV+++ G  L  + C  +DLL++L +I GL+R
Sbjct: 151 KSRTIAEIYCEAAELVRRGSREVVLLGQNVDSY-GHDLPEKPC-LADLLHALHDIPGLLR 208

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+ TSHP+D+S  LI A   L  +   L LPVQ+G+D IL +M R +T+ +YR+++ R+
Sbjct: 209 IRFLTSHPKDISQKLIDAMASLPKVCHSLSLPVQAGADTILAAMRRGYTSEQYRELVGRL 268

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQ 381
           +   PDI++ +D IVGFP ET + F  +  L+  IGY       YSPR  T  + +M + 
Sbjct: 269 KIAMPDISLQTDLIVGFPSETAEQFDQSYKLMSDIGYDAIHVAAYSPRPQTVAARDMADN 328

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           V    K  RL  ++   +      N A V    EVL+E  G++K K  GR+   + V L 
Sbjct: 329 VPVAEKKRRLKLIEDLQKGTVSKANAALVDTFAEVLVE--GRQKNKWQGRTLGGKLVFLE 386

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
           S     G +I V+I      +L  +LV
Sbjct: 387 SDQPLEGCLISVKIFKASPWSLQAKLV 413


>gi|320162381|ref|YP_004175606.1| putative tRNA-thiotransferase [Anaerolinea thermophila UNI-1]
 gi|319996235|dbj|BAJ65006.1| putative tRNA-thiotransferase [Anaerolinea thermophila UNI-1]
          Length = 438

 Score =  245 bits (625), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 161/448 (35%), Positives = 246/448 (54%), Gaps = 19/448 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           ++ + + GCQMNV DS R+       GY      ++AD+IVLNTC +R+ A +K Y  L 
Sbjct: 2   KYHIWTEGCQMNVADSQRVASALEHLGYSVTPKPEEADVIVLNTCVVRQSAEDKAYGRLN 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILR-RSPIVNVVVGPQTYYRLPELLERAR 144
            +R LK    ++   L++ + GC+      + LR R P V+V   P     L   L ++ 
Sbjct: 62  SLRPLK----EKNPHLVINLMGCLVGIRNNDALRKRFPFVDVFSPPSDPSPLVAFLTQSE 117

Query: 145 ---FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
                +    T Y+  D      +V     R + V+A + +  GC   CT+C++PY RGI
Sbjct: 118 VRAMEESATATRYAYMDG----DLVLPEVERGKLVSAHIPVVYGCSHACTYCIIPYRRGI 173

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR    ++ EAR L+  GV EITLLGQ V+ + GK  +    T + LL  LSEI+GL 
Sbjct: 174 ERSRPPEDILAEARALVRQGVKEITLLGQIVDRY-GKD-NPAYPTLAGLLIRLSEIEGLE 231

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+ TSHP  M+D L+ A   L  +MP++ +P Q+G D +L++M R +TA +YR++I R
Sbjct: 232 RIRFLTSHPNWMTDELLDAVASLPKVMPHIEVPAQAGDDTVLENMKRGYTAEQYRELIAR 291

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT-PGSNMLE 380
           IR   P ++I++D IVGFPGET++ F  T  L++ +    A   +YSPR GT     M +
Sbjct: 292 IRERIPGVSIATDIIVGFPGETEEQFMNTYRLLEDLRLDVAHLARYSPRPGTVSARRMKD 351

Query: 381 QVDENVKAERLLCLQKKLREQQV-SFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV 439
            V E  K  R   L+ +L+E+ V   N   +G+ + VL E+  K++ K  GR+P  + V 
Sbjct: 352 DVPEEEKMRRFRMLE-ELQERIVGEINARYLGESVPVLFEEKVKQRWK--GRTPTNKLVF 408

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGEL 467
           + S+    G I +V+IT     ++ G L
Sbjct: 409 VESEEDLHGQIREVKITWTGPWSMIGSL 436


>gi|312127656|ref|YP_003992530.1| RNA modification enzyme, miab family [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311777675|gb|ADQ07161.1| RNA modification enzyme, MiaB family [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 434

 Score =  245 bits (625), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 149/440 (33%), Positives = 248/440 (56%), Gaps = 19/440 (4%)

Query: 33  GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92
           GC++N Y++  + ++F   G+E V+    AD+ V+NTC +   +  K    + + + L  
Sbjct: 9   GCKVNQYETQAVAELFKESGFEIVDFDSKADVYVINTCTVTNISDRKSRQAIKKAKKLSP 68

Query: 93  SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR---V 149
             I       VVV GC  Q   +E+  +   V++++G +   R+ + + +    K+    
Sbjct: 69  QSI-------VVVMGCYPQVYPQEV-EKIEDVDIIIGTKDRQRIVDYVRQYLEDKKKIVA 120

Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209
           +D +Y  E  FE L I +  +N +    AF+ I+EGCD+FC++C++PY RG   SRSL  
Sbjct: 121 IDGEYKRE-AFEELKISE--FNERS--RAFIKIEEGCDQFCSYCIIPYARGAVRSRSLKS 175

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSH 269
           + +E  +L+  G  E  + G N++++ GK LDG K T  D++  +++I+G+ R+R ++  
Sbjct: 176 IEEEVIRLVQKGYKEFVITGINISSY-GKDLDG-KVTLIDVIERVNKIEGVKRIRLSSLE 233

Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329
           P  M+D  I+     D L  +LHL +QSGSD+ILK MNR +T  +Y+ I+DRIR    D+
Sbjct: 234 PVIMNDEFIERLLGFDKLCHHLHLSLQSGSDKILKLMNRHYTTAKYQGIVDRIREKWEDV 293

Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAE 389
           A ++D IVGFPGET++DF AT++ V KIG+++   F++SP+ GT    M  QVD   K  
Sbjct: 294 AFTTDIIVGFPGETEEDFNATLEFVQKIGFSRIHVFRFSPKKGTKAYEMPNQVDSKEKER 353

Query: 390 RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS-PWLQSVVLNSKNHNIG 448
           R   +++        F+   VG  +EVLIE+     G   G S  ++++++  S     G
Sbjct: 354 RSKVMKEVAARLSYQFHRKFVGNWLEVLIEQDSDFDGYYEGYSGNYIRTLIRKSNMIVSG 413

Query: 449 DIIKVRITDVKISTLYGELV 468
           +I KV+IT      + GE++
Sbjct: 414 EIYKVKITQAYEQYVKGEII 433


>gi|222529273|ref|YP_002573155.1| MiaB family RNA modification enzyme [Caldicellulosiruptor bescii
           DSM 6725]
 gi|222456120|gb|ACM60382.1| RNA modification enzyme, MiaB family [Caldicellulosiruptor bescii
           DSM 6725]
          Length = 434

 Score =  245 bits (625), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 148/440 (33%), Positives = 248/440 (56%), Gaps = 19/440 (4%)

Query: 33  GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92
           GC++N Y++  + ++F   G+E V+    AD+ V+NTC +   +  K    + + + L  
Sbjct: 9   GCKVNQYETQAVAELFKESGFEIVDFDSKADVYVINTCTVTNISDRKSRQAIKKAKKLSP 68

Query: 93  SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR---V 149
             I       VVV GC  Q   +E+  +   V++++G +   ++ + + +    K+    
Sbjct: 69  QSI-------VVVMGCYPQVYPQEV-EKIEDVDIIIGTKDRQKIVDYVRQYLEDKKKIVA 120

Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209
           ++ DY  E  FE L I +  +N +    AF+ I+EGCD+FC++C++PY RG   SRSL  
Sbjct: 121 INEDYKRE-AFEELKISE--FNERS--RAFIKIEEGCDQFCSYCIIPYARGAVRSRSLKS 175

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSH 269
           + +E  +L+  G  E  + G N++++ GK LD EK T  D++  +++I+G+ R+R ++  
Sbjct: 176 IEEEVIRLVQKGYKEFVITGINISSY-GKDLD-EKVTLIDVIERVNKIEGVKRIRLSSLE 233

Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329
           P  M+   I+     D L  +LHL +QSGSD+ILK MNR +T  +Y+ I+DRIR    D+
Sbjct: 234 PVIMNGEFIERLLSFDKLCHHLHLSLQSGSDKILKLMNRHYTTAQYQSIVDRIREKWDDV 293

Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAE 389
           A ++D IVGFPGET++DF AT+D V KIG+++   F++SP+ GT    M  QVD   K  
Sbjct: 294 AFTTDIIVGFPGETEEDFNATLDFVQKIGFSRIHVFRFSPKKGTKAYEMPNQVDSKEKER 353

Query: 390 RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS-PWLQSVVLNSKNHNIG 448
           R   +++        F+   VG+ +EVLIE+     G   G S  ++++++  S     G
Sbjct: 354 RSKIMKEVAASLSYQFHSKFVGKTLEVLIEQDSDFDGYYEGYSGNYIRTLIRKSHMIVHG 413

Query: 449 DIIKVRITDVKISTLYGELV 468
           +I KV+IT      + GE++
Sbjct: 414 EIYKVKITQAYRQYVKGEII 433


>gi|15611324|ref|NP_222975.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Helicobacter
           pylori J99]
 gi|11387382|sp|Q9ZMG6|MIAB_HELPJ RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|4154788|gb|AAD05846.1| putative [Helicobacter pylori J99]
          Length = 437

 Score =  244 bits (624), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 146/436 (33%), Positives = 241/436 (55%), Gaps = 21/436 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + ++++ GC MN  DS  +        Y+  +    ADLI++NTC +REK   K++S +G
Sbjct: 2   KVYIETMGCAMNSRDSEHLLSELSKLDYKETSDPKMADLILINTCSVREKPERKLFSEIG 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           +   +K    K G      V GC A   G +IL+++P V+ V+G +   ++ +++ + + 
Sbjct: 62  QFAKIKKPNAKIG------VCGCTASHMGADILKKAPSVSFVLGARNVSKISQVIHKEKA 115

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            +  +D D S    FE        + +K  + + L I  GCDK C +C+VP+TRG EIS 
Sbjct: 116 VEVAIDYDESAY-AFE-------FFEKKAQIRSLLNISIGCDKKCAYCIVPHTRGKEISI 167

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE--KCTFSDLLYSLSEIKGLVRL 263
            +  ++ EA KL +NG  E+ LLGQNVN + G     E  K  FSDLL  LSEI+G+ R+
Sbjct: 168 PMDLILKEAEKLANNGTKELMLLGQNVNNY-GVRFSSEHAKVGFSDLLDKLSEIQGIERI 226

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+T+ HP  M+D  ++       +   +H+P+QSGS  +LK M R ++   +   ++R++
Sbjct: 227 RFTSPHPLHMNDAFLERFAQNPKVCKSIHMPLQSGSSAVLKMMRRGYSKEWFLNRVERLK 286

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           ++ P++ IS+D IVGFP E+D DF  TM++++K+ +   +SF YSPR  T      E+V 
Sbjct: 287 ALVPEVGISTDIIVGFPNESDKDFEDTMEVLEKVRFDTLYSFIYSPRPFTEAGAWKERVP 346

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV---GRSPWLQSVVL 440
             + + RL  LQ + +E         VG+   VL+E   +  G++V   GRS   + + +
Sbjct: 347 LEISSLRLERLQNRHKEILEEKAKLEVGKTHVVLVENRREMDGQIVGFEGRSDTGKFIEV 406

Query: 441 NSK-NHNIGDIIKVRI 455
             K   N G++++V I
Sbjct: 407 TCKEKKNPGELVRVEI 422


>gi|21356207|ref|NP_650002.1| CG6345 [Drosophila melanogaster]
 gi|32129453|sp|Q9VGZ1|CK5P1_DROME RecName: Full=CDK5RAP1-like protein
 gi|7299338|gb|AAF54531.1| CG6345 [Drosophila melanogaster]
 gi|17945319|gb|AAL48716.1| RE15838p [Drosophila melanogaster]
          Length = 583

 Score =  244 bits (624), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 151/470 (32%), Positives = 246/470 (52%), Gaps = 39/470 (8%)

Query: 32  YGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLK 91
           YGCQMN  D+  +  +    GY R    ++AD+I+L TC +R+ A +++ + L  +R +K
Sbjct: 99  YGCQMNTNDTEVVFSILKENGYLRCQEPEEADVIMLVTCAVRDGAEQRIRNRLKHLRAMK 158

Query: 92  NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR-FGKRVV 150
           N R      L + + GC+A+   E++L +   V+V+ GP +Y  LP LL  +R +G   +
Sbjct: 159 NKRSTRRHPLQLTLLGCMAERLKEKLLEQEQCVDVIAGPDSYKDLPRLLAISRHYGNSAI 218

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
           +   S+++ +  +  V          TAF++I  GCD  CT+C+VP+TRG E SR L+ +
Sbjct: 219 NVLLSLDETYADVMPVRLN---SESPTAFVSIMRGCDNMCTYCIVPFTRGRERSRPLASI 275

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK---------------------CTFSD 249
           V E + L + GV E+TLLGQNVN++R +    E+                       F+ 
Sbjct: 276 VAEVKALAEQGVKEVTLLGQNVNSYRDRTAQEEQDSLKATPVPGFSTVYKPKTGGTPFAA 335

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
           LL S+++    +R+R+T+ HP+D SD +++   D   +   LHLP QSG+ ++L+ M R 
Sbjct: 336 LLRSVAQAVPDMRIRFTSPHPKDFSDEVLEVIRDHPNVCKQLHLPAQSGNTQVLERMRRG 395

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369
           ++   Y +++  IR   P++ +SSDFI GF GET+++F+ T+ L+ ++ Y  A+ F YS 
Sbjct: 396 YSREAYLELVQHIRQFLPNVGLSSDFICGFCGETEEEFQDTVSLIQQVQYNVAYLFAYSM 455

Query: 370 RLGTPGSNML-EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGK 427
           R  T       + V  NVK ERL  + +  RE     +    GQ   +LIE K  +    
Sbjct: 456 REKTTAHRRYKDDVPINVKNERLQRMVQVFREGATQLHRKMEGQEQLILIEGKSKRSDAH 515

Query: 428 LVGRSPWLQSVVLNS------------KNHNIGDIIKVRITDVKISTLYG 465
             GR+     V++ S            K+  +GD + VRI +     L G
Sbjct: 516 WFGRNDANIKVIVPSIYVPISGDSTARKSFGVGDFLAVRIEESNSQVLKG 565


>gi|119596726|gb|EAW76320.1| CDK5 regulatory subunit associated protein 1, isoform CRA_c [Homo
           sapiens]
          Length = 592

 Score =  244 bits (624), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 149/454 (32%), Positives = 245/454 (53%), Gaps = 41/454 (9%)

Query: 17  IVDQCIVPQR-FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREK 75
           ++D+ +  QR  ++++YGCQMNV D+     +    GY R +++ +AD+I+L TC IREK
Sbjct: 91  MMDELLGRQRKVYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCSIREK 150

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135
           A + +++ L +++ LK  R +    L + + GC+A+   EEIL R  +V+++ GP  Y  
Sbjct: 151 AEQTIWNRLHQLKALKTRRPRSRVPLRIGILGCMAERLKEEILNREKMVDILAGPDAYRD 210

Query: 136 LPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
           LP LL  A  G++  +   S+++ +  +  V    +     +AF++I  GCD  C++C+V
Sbjct: 211 LPRLLAVAESGQQAANVLLSLDETYADVMPVQTSAS---ATSAFVSIMRGCDNMCSYCIV 267

Query: 196 PYTRGIEISRSLSQVVDEARKLIDN--------------GVCEITLLGQNVNAWR----- 236
           P+TRG E SR ++ +++E +KL +               G+ E+TLLGQNVN++R     
Sbjct: 268 PFTRGRERSRPIASILEEVKKLSEQVFLPPRPPKVLGLQGLKEVTLLGQNVNSFRDNSEV 327

Query: 237 ----------GKGLDGEKCT------FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKA 280
                      +G      T      F+ LL  +S +   +R+R+T+ HP+D  D +++ 
Sbjct: 328 QFNSAVPTNLSRGFTTNYKTKQGGLRFAHLLDQVSRVDPEMRIRFTSPHPKDFPDEVLQL 387

Query: 281 HGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFP 340
             + D +   +HLP QSGS R+L++M R ++   Y +++  IR   P +++SSDFI GF 
Sbjct: 388 IHERDNICKQIHLPAQSGSSRVLEAMRRGYSREAYVELVHHIRESIPGVSLSSDFIAGFC 447

Query: 341 GETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML-EQVDENVKAERLLCLQKKLR 399
           GET++D   T+ L+ ++ Y   F F YS R  T   + L + V E VK  RL  L    R
Sbjct: 448 GETEEDHVQTVSLLREVQYNMGFLFAYSMRQKTRAYHRLKDDVPEEVKLRRLEELITIFR 507

Query: 400 EQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRS 432
           E+    N   VG    VL+E   K     L GR+
Sbjct: 508 EEATKANQTSVGCTQLVLVEGLSKRSATDLCGRN 541


>gi|261839125|gb|ACX98890.1| hypothetical protein HPKB_0280 [Helicobacter pylori 52]
          Length = 437

 Score =  244 bits (624), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 144/435 (33%), Positives = 239/435 (54%), Gaps = 19/435 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + ++++ GC MN  DS  +        Y+  +    ADLI++NTC +REK   K++S +G
Sbjct: 2   KVYIETMGCAMNSRDSEHLLSELSKLDYKETSDPKAADLILINTCSVREKPERKLFSEIG 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           +   +K    K G      V GC A   G +IL+++P V+ V+G +   ++ +++ + + 
Sbjct: 62  QFAKIKKPNAKIG------VCGCTASHMGADILKKAPSVSFVLGARNVSKISQVIHKEKA 115

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            +  +D D S    FE        + +K  + + L I  GCDK C +C+VP+TRG EIS 
Sbjct: 116 VEVAIDYDESAY-AFE-------FFEKKAQIRSLLNISIGCDKKCAYCIVPHTRGKEISI 167

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-GLDGEKCTFSDLLYSLSEIKGLVRLR 264
            +  ++ EA KL  NG  E+ LLGQNVN +  +   +  K  FSDLL  LSEI+G+ R+R
Sbjct: 168 PMDLILKEAEKLASNGTKELMLLGQNVNNYGARFSSEHAKVDFSDLLDKLSEIQGIERIR 227

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +T+ HP  M+D  ++       +   +H+P+QSGS  +LK M R ++   +   ++R+++
Sbjct: 228 FTSPHPLHMNDAFLERFAKNPKVCKSIHMPLQSGSSAVLKMMRRGYSKEWFLNRVERLKA 287

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           + P++ IS+D IVGFP E+D DF  TM++++K+ +   +SF YSPR  T      E+V  
Sbjct: 288 LVPEVGISTDIIVGFPNESDKDFEDTMEVLEKVRFDTLYSFIYSPRPFTEAGAWKERVPL 347

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV---GRSPWLQSVVLN 441
            V + RL  LQ + +E         VG+   VL+E   +   ++V   GRS   + + + 
Sbjct: 348 EVSSSRLERLQNRHKEILEEKAKLEVGKTHVVLVENRREMDNQIVGFEGRSDTGKFIEVA 407

Query: 442 SK-NHNIGDIIKVRI 455
            K   N G++++V I
Sbjct: 408 CKEKRNPGELVRVEI 422


>gi|308184072|ref|YP_003928205.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Helicobacter
           pylori SJM180]
 gi|308059992|gb|ADO01888.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Helicobacter
           pylori SJM180]
          Length = 437

 Score =  244 bits (624), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 147/436 (33%), Positives = 239/436 (54%), Gaps = 21/436 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + ++++ GC MN  DS  +        Y+  +    ADLI++NTC +REK   K++S +G
Sbjct: 2   KVYIETMGCAMNSRDSEHLLSELSKLDYKETSDPKTADLILINTCSVREKPERKLFSEIG 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           +   +K    K G      V GC A   G +IL+++P V+ V+G +   ++ +++ + + 
Sbjct: 62  QFAKIKKPNAKIG------VCGCTASHMGADILKKAPSVSFVLGARNVSKISQVIHKEKA 115

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            +  +D D S    FE        + +K  + + L I  GCDK C +C+VP+TRG EIS 
Sbjct: 116 VEVAIDYDESAY-AFE-------FFEKKTQIRSLLNISIGCDKKCAYCIVPHTRGKEISI 167

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE--KCTFSDLLYSLSEIKGLVRL 263
            +  ++ EA KL  NG  E+ LLGQNVN + G     E  K  FSDLL  LSEI+G+ R+
Sbjct: 168 PMDLILKEAEKLAHNGTKELMLLGQNVNNY-GVRFSSEHAKVDFSDLLDKLSEIQGIERI 226

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+T+ HP  M+D  ++       +   +H+P+QSGS  +LK M R ++   +   ++R++
Sbjct: 227 RFTSPHPLHMNDAFLERFAKNPKVCKSIHMPLQSGSSAVLKMMRRGYSKEWFLNRVERLK 286

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           ++ P++ IS+D IVGFP E+D DF  TM++++K+ +   +SF YSPR  T      E+V 
Sbjct: 287 ALVPEVGISTDIIVGFPNESDKDFEDTMEVLEKVRFDTLYSFIYSPRPFTEAGAWKERVP 346

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV---GRSPWLQSVVL 440
             V + RL  LQ + +E         VG+   VL+E   +   ++V   GRS   + + +
Sbjct: 347 LEVSSSRLERLQNRHKEILEEKAKLEVGKTHVVLVENRREMDDQIVGFEGRSDTGKFIEV 406

Query: 441 NSK-NHNIGDIIKVRI 455
             K   N G+++KV I
Sbjct: 407 TCKEKRNPGELVKVEI 422


>gi|238019340|ref|ZP_04599766.1| hypothetical protein VEIDISOL_01204 [Veillonella dispar ATCC 17748]
 gi|237864039|gb|EEP65329.1| hypothetical protein VEIDISOL_01204 [Veillonella dispar ATCC 17748]
          Length = 431

 Score =  244 bits (624), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 145/424 (34%), Positives = 238/424 (56%), Gaps = 18/424 (4%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N YD+  M+ +F    YE V+  + AD+ V+NTC +     +K        R L
Sbjct: 8   TLGCRVNQYDTDAMKGLFLQNNYEAVDFDEKADIYVINTCSVTNMGEKKS-------RQL 60

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
                ++  D  V+V GC AQ + + I      VN+V+G     ++ EL+E+    +R +
Sbjct: 61  IRKAKRQNEDAYVIVTGCYAQLDPDAIAAIDG-VNLVIGTNNRSKIVELVEQLESTERQI 119

Query: 151 DT--DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           +   D   E  FE + +     ++ R   AF+ IQEGC+ +C FC++PYTRG   SR + 
Sbjct: 120 NAVRDIMNESNFEEMPLYGNESDKAR---AFMKIQEGCNNYCAFCIIPYTRGKLKSRKVD 176

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
            +V EA++L+++G  EI L G ++  + G  L G + T +D++ +L EI  L R+R+ + 
Sbjct: 177 DIVQEAKRLVEHGFHEIVLTGIHLGNY-GVELPG-RPTLADVVKALLEIPDLYRIRFGSI 234

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
              ++SD L++       + P+LHLP+Q+GSD +LK M R +T  EY+ +I  +RS   D
Sbjct: 235 ESVEVSDELVELMATNKRVCPHLHLPLQAGSDHVLKLMKRHYTLQEYKDLIASLRSRIKD 294

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           ++I++D I GFP ETD+DF  T++ V +IG+    +F YS R GTP + M +QV E VK 
Sbjct: 295 LSITTDIIAGFPQETDEDFEETLNTVREIGFTHIHAFPYSIREGTPAATMPDQVPEAVKK 354

Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG-RSPWLQSVVLNSKNHNI 447
            R+  L    +    ++  + +G+  E+LIEK  +E G  +G  + ++   V +   H I
Sbjct: 355 TRVALLNGLSQSGYEAYAKSRIGKPGEILIEK--EENGYYMGLTNEYVNGKVKSDGTHKI 412

Query: 448 GDII 451
           GD+I
Sbjct: 413 GDLI 416


>gi|78044693|ref|YP_359280.1| MiaB-like tRNA modifying enzyme [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|77996808|gb|ABB15707.1| MiaB-like tRNA modifying enzyme [Carboxydothermus hydrogenoformans
           Z-2901]
          Length = 434

 Score =  244 bits (624), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 160/442 (36%), Positives = 239/442 (54%), Gaps = 21/442 (4%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  ++  F  +GYE V+  D AD+ V+NTC +   +  K        R +
Sbjct: 8   TLGCKVNQYETEALKGAFLEKGYEIVDFSDYADIYVINTCTVTHLSDRKS-------RQM 60

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               +++    +V   GC AQ   EEIL+  P VN+V+G     RL EL+E+    +  +
Sbjct: 61  IRKAVQKNPRAVVAAVGCYAQVAPEEILK-IPEVNLVLGTVHKNRLVELVEKVLRERTKI 119

Query: 151 DTDYSVEDKFER----LSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           +   S E+  E     L +  G         AF+ IQEGC+ +C +C++PY RG   SR 
Sbjct: 120 NAVASFEELLEFEEMPLKLAPGK------ARAFVKIQEGCNSYCAYCIIPYARGPLRSRP 173

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
           L  VV E +KL  +G  EI L G +  A+  +  D  K   +DL+  L +I  L RLR +
Sbjct: 174 LEDVVAEVKKLCQSGFSEIVLTGIHTGAYGQEKQDLPK--LADLVAELFKIPELKRLRLS 231

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
           +  P+D +  L+    +      +LHLP+QSG D ILK+M R++T+YEY ++I+ IR   
Sbjct: 232 SIEPQDFTVELLDVLANSPKFCRHLHLPLQSGDDDILKAMRRKYTSYEYLRLIETIRERI 291

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           PDIA++SD IVGFPGET++ F  T +LV K+G+     FKYSPR GTP + M  Q+ E  
Sbjct: 292 PDIALTSDVIVGFPGETEEQFLNTYNLVKKVGFMDIHVFKYSPRAGTPAAKMPGQIPERE 351

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHN 446
           K  R L L     E   ++    +G+I+EV+ E+   E G   G S     V  +  N  
Sbjct: 352 KERRSLLLLNLKEELFKNYASKFLGKILEVIPEEQDTE-GFWEGHSDNYLRVKFSGNNIK 410

Query: 447 IGDIIKVRITDVKISTLYGELV 468
            G+I  V+IT++K   + GELV
Sbjct: 411 RGEIYPVKITEMKEGYVSGELV 432


>gi|302871917|ref|YP_003840553.1| RNA modification enzyme, MiaB family [Caldicellulosiruptor
           obsidiansis OB47]
 gi|302574776|gb|ADL42567.1| RNA modification enzyme, MiaB family [Caldicellulosiruptor
           obsidiansis OB47]
          Length = 433

 Score =  244 bits (624), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 148/440 (33%), Positives = 247/440 (56%), Gaps = 19/440 (4%)

Query: 33  GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92
           GC++N Y++  + ++F   G+E V+    AD+ V+NTC +   +  K    + + + L  
Sbjct: 9   GCKVNQYETQAVAELFKESGFEIVDFDSKADVYVINTCTVTNMSDRKSRQAIKKAKKLSP 68

Query: 93  SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR---V 149
             I       VVV GC  Q    E+ +   I ++++G +   ++ + ++     K+    
Sbjct: 69  ESI-------VVVMGCYPQVYPHEVEKIRDI-DIIIGTKDRQKIVDYVKEYLDNKKKIVA 120

Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209
           +D  Y  E  FE L I +  +N +    AF+ I+EGCD+FC++C++PY RG   SRSL  
Sbjct: 121 IDEGYKRES-FEELKISE--FNERS--RAFIKIEEGCDQFCSYCIIPYARGAVRSRSLES 175

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSH 269
           + +E R+L+ NG  E  + G N++A+ GK LDG K T  D++  ++EI+G+ R+R ++  
Sbjct: 176 IEEEVRRLVSNGYKEFVITGINISAY-GKDLDG-KITLIDVIERINEIEGVKRIRLSSLE 233

Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329
           P  MS+  I      D L  +LHL +QSGSD+ILK MNR +T  +Y+ I++RI+    D+
Sbjct: 234 PLIMSEQFISRLLSFDKLCHHLHLSLQSGSDKILKLMNRHYTTAQYQGIVERIKEKWDDV 293

Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAE 389
           A ++D IVGFPGET++DF  T+  V +IG+++   F++SP+ GT   +M  Q+D   K  
Sbjct: 294 AFTTDIIVGFPGETEEDFNDTVKFVQEIGFSRIHVFRFSPKKGTKAYDMPNQIDSKEKER 353

Query: 390 RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS-PWLQSVVLNSKNHNIG 448
           R   +++        F+   VG+ +EVLIE+     G   G S  +++++V  S     G
Sbjct: 354 RSKVMKEVAANLSYQFHRKFVGKWLEVLIEQDSDFDGYYEGYSGNYIRTLVRKSHMIVPG 413

Query: 449 DIIKVRITDVKISTLYGELV 468
           +I KV+IT      + GE++
Sbjct: 414 EIYKVKITQAYEQYVKGEII 433


>gi|330803397|ref|XP_003289693.1| hypothetical protein DICPUDRAFT_36174 [Dictyostelium purpureum]
 gi|325080203|gb|EGC33768.1| hypothetical protein DICPUDRAFT_36174 [Dictyostelium purpureum]
          Length = 538

 Score =  244 bits (624), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 155/484 (32%), Positives = 264/484 (54%), Gaps = 47/484 (9%)

Query: 11  AHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC 70
            ++ S I+++    +  ++++YGCQMN  D+  +  +  + GY+ ++++ +AD++ LNTC
Sbjct: 34  PYLQSTIMNETGEGKNVYIETYGCQMNFADTEVINSILKTSGYKIIDTLKEADIVFLNTC 93

Query: 71  HIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGP 130
            IRE A  K++  L  +R+ K    KE  ++ + V GC+A+   E++L     V++VVGP
Sbjct: 94  AIRENAESKIWLRLSELRSKKR---KEKRNITIAVIGCMAERLKEKLLESEHRVDIVVGP 150

Query: 131 QTYYRLPELLERARFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
             Y  LP LL + + G++   ++   S ++ +  ++ V    N    V+A+++I  GC+ 
Sbjct: 151 DAYRSLPSLLAKIQDGEQQTAINVMLSADETYADITPVRTSDNM---VSAYVSIMRGCNN 207

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------------- 235
            C++C+VP+TRG E SR +  +++E R+L + G  EITLLGQNVN++             
Sbjct: 208 MCSYCIVPFTRGRERSRPVESILNEVRQLSEQGYKEITLLGQNVNSYNFVDNEESTPVNK 267

Query: 236 ----RGKGLDGEKC---------TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHG 282
               + K  DG K          +F++L+  +SE+   +R+R+T+ HP+D  + L++   
Sbjct: 268 DEIEKLKPRDGFKTIYKSPKKGISFTELIKLVSEVDPEMRIRFTSPHPKDFPNDLLELVK 327

Query: 283 DLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGE 342
           +   +   LH+P QSGS ++L+SM R +T   Y ++ID I+   PD  ISSDFI GF GE
Sbjct: 328 NTPNICNSLHIPAQSGSSKVLESMRRGYTRESYLELIDTIKKELPDCTISSDFISGFCGE 387

Query: 343 TDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML-EQVDENVKAERLL----CLQKK 397
           T+ D   T+ L++ +G+  AF F YS R  T     L + V    KA RL        K 
Sbjct: 388 TEQDHLETISLMEYVGFENAFMFMYSLREKTHAHRHLKDDVSVEDKARRLSQVVDTFYKL 447

Query: 398 LREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVV---LNSKNHNIGDIIKV 453
           L+E+    ++  +G    VLI++  +      VGR+   + V+   L     NIGD + V
Sbjct: 448 LKEK----SNKEIGNFHLVLIDRLSRRSNNDFVGRTDTNKKVLIPNLEEDKLNIGDYVIV 503

Query: 454 RITD 457
           +I +
Sbjct: 504 QIVN 507


>gi|324508033|gb|ADY43398.1| CDK5RAP1-like protein [Ascaris suum]
          Length = 584

 Score =  244 bits (623), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 158/469 (33%), Positives = 247/469 (52%), Gaps = 43/469 (9%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           +YGCQMNV D   +  + F+  Y  V+    AD+++L TC IRE A EKV+  L ++R  
Sbjct: 100 TYGCQMNVNDMETVRSILFANKYLEVDDERKADVVLLMTCSIREGAEEKVWRVLKKLRRS 159

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
            N +   G      V GC+A+    ++L+ +  V+VV GP +Y  LP LL   R G+  +
Sbjct: 160 ANKQQTVG------VLGCMAERVRHKLLQEANAVDVVAGPDSYRDLPRLLAVTRTGRSAI 213

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
           +   S+E+ +  ++ V      K   +AF++I  GCD  CT+C+VP+TRG E SR L  +
Sbjct: 214 NVQLSLEETYADVTPVRLDPMAK---SAFVSIMRGCDNMCTYCIVPFTRGRERSRPLRSI 270

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGK--------GLD------GEKC---------TF 247
           VDE ++L   G  ++ LLGQNVN++R          G+D      G K           F
Sbjct: 271 VDEVKRLSYQGYKQVVLLGQNVNSYRDTSEATYVSCGIDDSGLAPGFKTIYKPKKSGLNF 330

Query: 248 SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307
           + LL  +S++   +R+R+T+ HP+D S  +I+   +   +   +HLP QSGS+ +L++M 
Sbjct: 331 ATLLERVSDVDPEMRIRFTSPHPKDFSFQVIELIKERTNICKQIHLPAQSGSNTVLEAMG 390

Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           R +T   Y  ++D+IR + P+++++SDFI GF GET+ D + T+DL+ ++ Y+  + F Y
Sbjct: 391 RGYTRESYLALVDQIRQLIPEVSLTSDFIAGFCGETERDHQQTLDLIRRVKYSFCYVFPY 450

Query: 368 SPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG 426
           S R  T  S ++ + V   VK  R   L +  R + +  N A VG    VLIE   K   
Sbjct: 451 SMREKTRASYHLKDDVPIEVKRRRHEELAQVFRGEALKTNAALVGSKQLVLIESRSKRSA 510

Query: 427 KLV-GRSPWLQSVVLNS---------KNHNIGDIIKVRITDVKISTLYG 465
             V GR+     V+L +         +    GD + V I      TL G
Sbjct: 511 TAVAGRADGGAKVILENCEVDGCGEVRELRPGDYVAVEIESANSQTLLG 559


>gi|194740916|ref|XP_001952936.1| GF17521 [Drosophila ananassae]
 gi|190625995|gb|EDV41519.1| GF17521 [Drosophila ananassae]
          Length = 577

 Score =  244 bits (623), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 151/465 (32%), Positives = 242/465 (52%), Gaps = 33/465 (7%)

Query: 32  YGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLK 91
           +GCQMN  D+  +  +    GY R    +DAD+I+L TC +R+ A +++++ L  +R +K
Sbjct: 101 FGCQMNTNDTEVVWSVLRENGYARCQDPEDADIIMLVTCAVRDGAEQRIWNRLKHLRAMK 160

Query: 92  NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR-FGKRVV 150
           + R      L + V GC+A+   E++L +   V+V+ GP +Y  LP LL  +R +G   +
Sbjct: 161 SKRSPRRHPLQLSVLGCMAERLKEKLLEKEQCVDVIAGPDSYKDLPRLLAISRHYGNSAI 220

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
           +   S+++ +  +  V          TA+++I  GCD  CT+C+VP+TRG E SR L  +
Sbjct: 221 NVLLSLDETYADVMPVRLN---SESPTAYVSIMRGCDNMCTYCIVPFTRGRERSRPLESI 277

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK--------------------CTFSDL 250
           + E R L + GV E+TLLGQNVN++R  G   EK                     TFS L
Sbjct: 278 LTEVRALQEQGVKEVTLLGQNVNSYRDGGTSQEKDPNSVPVPGFKTVYKPKSGGITFSRL 337

Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
           L S++E    +R+R+T+ HP+D SD +++   D   +   LHLP QSG+ ++L+ M R +
Sbjct: 338 LRSVAEAVPEMRIRFTSPHPKDFSDDVLRVIRDYPNVCKQLHLPAQSGNTKVLERMRRGY 397

Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370
           +   Y  ++DRIR   P++ +SSDFI GF GET+++F+ T+ L+ ++ Y  A+ F YS R
Sbjct: 398 SREAYLHLVDRIRLFLPNVGLSSDFICGFCGETEEEFQDTVSLIQQVQYNVAYLFAYSMR 457

Query: 371 LGTPGSNML-EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKL 428
             T       + V   VK ERL  + +  R      +    G    +LIE K  +     
Sbjct: 458 EKTTAHRRFKDDVPLLVKNERLKRMVEVFRAGATELHKKMEGHEQLILIEGKSKRSASHW 517

Query: 429 VGRSPWLQSVVLNSKNH-------NIGDIIKVRITDVKISTLYGE 466
            GR+     V++ +           IGD +   I +     L G+
Sbjct: 518 FGRNDANIKVIVPAGKPLGSDQPIQIGDFVVAHIEESNSQVLKGK 562


>gi|281207324|gb|EFA81507.1| hypothetical protein PPL_05496 [Polysphondylium pallidum PN500]
          Length = 616

 Score =  244 bits (622), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 164/494 (33%), Positives = 255/494 (51%), Gaps = 49/494 (9%)

Query: 16  QIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREK 75
           +I D     +  FV+SYGCQMN  D+  +  +  S GY    S   AD++ LNTC IRE 
Sbjct: 116 EIADASGEGRSVFVESYGCQMNFADTEIVYSVMRSAGYTVAESAKSADIVFLNTCAIREN 175

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135
           A +K++  L  +R  K    ++G   ++ V GC+A+   +++L  +  V++VVGP  Y  
Sbjct: 176 AEDKIWFRLSELRKQKR---RQG--TVIGVLGCMAERLKQKLLESNKSVDLVVGPDAYRS 230

Query: 136 LPELLERARFG-KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCV 194
           LP LL R   G +  ++   S ++ +  ++ +    N   GV+A+++I  GC+  C++C+
Sbjct: 231 LPSLLSRIEDGDQTAINVMLSADETYADIAPIRTNSN---GVSAYVSIMRGCNNMCSYCI 287

Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR------------------ 236
           VP+TRG E SRS+  +VDE ++L  +G  EITLLGQNVN++                   
Sbjct: 288 VPFTRGRERSRSIHSIVDEVKQLSADGYKEITLLGQNVNSYNFIDEVVEPLAEKKEKEVL 347

Query: 237 --GKGLDG------EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLM 288
              +G +          TF++L+  +S +   +R+R+T+ HP+D  D LI+       + 
Sbjct: 348 TPREGFNTIYKSPKRGVTFTELMDKVSLVDPEMRIRFTSPHPKDFPDALIELIKQRPNIC 407

Query: 289 PYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFR 348
             LH+P QSG+  +L+ M R ++   Y Q+ID IR   PD AISSDFI GF GET+ + R
Sbjct: 408 QQLHIPAQSGNTEVLERMRRGYSRESYLQLIDLIRRELPDAAISSDFISGFCGETESEHR 467

Query: 349 ATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFND 407
            T+ L++ +GY  AF F YS R  T     M + VD   K  RL  +           + 
Sbjct: 468 DTISLLNAVGYENAFMFMYSLREKTHAHRTMADDVDVETKTRRLQEVIDTFYSNLRGKSK 527

Query: 408 ACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSVVL------NSKNHN------IGDIIKVR 454
           A +G+   VL+++   + K   VGR+   + V++      N  N N       GD I V 
Sbjct: 528 AEIGRRHLVLVDRISRRSKDHFVGRTDTNKKVIIPNTPIVNPSNSNNMEDIKPGDYIMVD 587

Query: 455 ITDVKISTLYGELV 468
           I D    TL G+ +
Sbjct: 588 IVDGSEITLQGKPI 601


>gi|315586263|gb|ADU40644.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Helicobacter pylori 35A]
          Length = 437

 Score =  244 bits (622), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 143/435 (32%), Positives = 239/435 (54%), Gaps = 19/435 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + ++++ GC MN  DS  +        Y+  +    ADLI++NTC +REK   K++S +G
Sbjct: 2   KVYIETMGCAMNSRDSEHLLSELSKLDYKETSDPKAADLILINTCSVREKPERKLFSEIG 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           +   +K    K G      V GC A   G +IL+++P V+ V+G +   ++ +++ + + 
Sbjct: 62  QFAKIKKPNAKIG------VCGCTASHMGADILKKAPSVSFVLGARNVSKISQVIHKEKA 115

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            +  +D D S    FE        + +K  + + L I  GCDK C +C+VP+TRG EIS 
Sbjct: 116 VEVAIDYDESAY-AFE-------FFEKKAQIRSLLNISIGCDKKCAYCIVPHTRGKEISI 167

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-GLDGEKCTFSDLLYSLSEIKGLVRLR 264
            +  ++ EA KL  NG  E+ LLGQNVN +  +   +  K  FSDLL  LSEI+G+ R+R
Sbjct: 168 PMDLILKEAEKLASNGTKELMLLGQNVNNYGARFSSEHAKVDFSDLLDKLSEIQGIERIR 227

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +T+ HP  M+D  ++       +   +H+P+QSGS  +LK M R ++   +   ++R+++
Sbjct: 228 FTSPHPLHMNDAFLERFAKNPKVCKSIHMPLQSGSSAVLKMMRRGYSKEWFLNRVERLKA 287

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           + P++ IS+D IVGFP E+D DF  TM++++K+ +   +SF YSPR  T      E+V  
Sbjct: 288 LVPEVGISTDIIVGFPNESDKDFEDTMEVLEKVRFDTLYSFIYSPRPFTEAGAWKERVPL 347

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV---GRSPWLQSVVLN 441
            + + RL  LQ + +E         VG+   VL+E   +   ++V   GRS   + + + 
Sbjct: 348 EISSSRLERLQNRHKEILEEKAKLEVGKTHVVLVENRREINNQIVGFEGRSDTGKFIEVA 407

Query: 442 SK-NHNIGDIIKVRI 455
            K   N G++++V I
Sbjct: 408 CKEKRNPGELVRVEI 422


>gi|94502388|ref|ZP_01308846.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Candidatus Sulcia
           muelleri str. Hc (Homalodisca coagulata)]
 gi|94451055|gb|EAT14022.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Candidatus Sulcia
           muelleri str. Hc (Homalodisca coagulata)]
          Length = 438

 Score =  244 bits (622), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 149/449 (33%), Positives = 250/449 (55%), Gaps = 27/449 (6%)

Query: 37  NVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIK 96
           N+ DS  +  +  ++G+ +  ++ +A++I++NTC IR+K+ +K+   + +I+ +    IK
Sbjct: 1   NISDSEIVSSILNNKGFIKTENLKEANIILINTCSIRDKSEKKILLRINQIKFI----IK 56

Query: 97  EGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR--VVDTDY 154
           +  D+L+ + GC+A       ++   ++N+VVGP +Y  +P L+    F K+   + T +
Sbjct: 57  KNNDILIGILGCMAYKFKN--IKEKKLINLVVGPDSYREIPNLINNF-FKKKGEYISTSF 113

Query: 155 SVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEA 214
           S  + +    I+     +K  +TAF+TI  GCD  CTFCVVP+TRG E SR    ++ E 
Sbjct: 114 SKTETYA--DIIPKREEKK--ITAFVTIMRGCDNMCTFCVVPFTRGREKSRDPYSIIKEC 169

Query: 215 RKLIDNGVCEITLLGQNVNA--WRGKGL----------DGEKCTFSDLLYSLSEIKGLVR 262
           + L   G  EI LLGQNV++  W G GL          + E   FS LL  ++    L+R
Sbjct: 170 KFLFKKGYKEIILLGQNVDSYLWYGGGLKKKFKIKEIKNEEIINFSKLLELVAISVPLMR 229

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+ TS+P DMSD ++        +  ++HLPVQSGS+RIL  MNR+HT  +Y  +I++I
Sbjct: 230 IRFCTSNPNDMSDNVLNVIKKYINICKHIHLPVQSGSNRILSLMNRKHTCEDYILLINKI 289

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG-SNMLEQ 381
           +++ P+ ++S D I GF  E ++D   T++L++ + Y  ++ F YS R+GT     +++ 
Sbjct: 290 KNIIPNCSLSCDIITGFCNENENDHNETLNLMNYVKYNFSYMFIYSHRIGTYAYKKLIDN 349

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSVVL 440
           V  + K  RL  +    +      N   +G I ++LIE    K      GR+     V+ 
Sbjct: 350 VSLSTKKRRLTEIINLQKTHSYYRNRKYIGSIQDILIEGISTKNINFFYGRNSGNDIVIF 409

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELVV 469
             KN+ IGD IKV+I +   +TL G++ V
Sbjct: 410 PKKNYKIGDFIKVKINNCTSATLVGDIYV 438


>gi|210134467|ref|YP_002300906.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Helicobacter
           pylori P12]
 gi|229890641|sp|B6JKJ8|MIAB_HELP2 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|210132435|gb|ACJ07426.1| 2-methylthioadenine synthetase [Helicobacter pylori P12]
          Length = 437

 Score =  244 bits (622), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 151/450 (33%), Positives = 244/450 (54%), Gaps = 25/450 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + ++++ GC MN  DS  +        Y+  +    ADLI++NTC +REK   K++S +G
Sbjct: 2   KVYIETMGCAMNSRDSEHLLSELSKLDYKETSDPKMADLILINTCSVREKPERKLFSEIG 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           +   +K    K G      V GC A   G +IL+++P V+ V+G +   ++ +++ + + 
Sbjct: 62  QFAKIKKPNAKIG------VCGCTASHMGADILKKAPSVSFVLGARNVSKISQVIHKEKA 115

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            +  +D D S    FE        + +K  + + L I  GCDK C +C+VP+TRG EIS 
Sbjct: 116 VEVAIDYDESAY-AFE-------FFEKKAQIRSLLNISIGCDKKCAYCIVPHTRGKEISI 167

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE--KCTFSDLLYSLSEIKGLVRL 263
            +  ++ EA KL +NG  E+ LLGQNVN + G     E  K  FSDLL  LSEI G+ R+
Sbjct: 168 PMDLILKEAEKLANNGTKELMLLGQNVNNY-GVRFSSEHAKVDFSDLLDKLSEIPGIERI 226

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+T+ HP  M+D  ++       +   +H+P+QSGS  +LK M R ++   +   ++R++
Sbjct: 227 RFTSPHPLHMNDGFLERFAKNPKVCKSIHMPLQSGSSAVLKMMRRGYSKEWFLNRVERLK 286

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           ++ P++ IS+D IVGFP E+D DF  TM++++K+ +   +SF YSPR  T      E+V 
Sbjct: 287 ALVPEVGISTDIIVGFPNESDKDFEDTMEVLEKVRFDTLYSFIYSPRPFTEAGAWKERVP 346

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV---GRSPWLQSVVL 440
             V + RL  LQ + +E         VG+   VL+E   +   ++V   GRS   + + +
Sbjct: 347 LEVSSSRLERLQNRHKEILEEKAKLEVGKTHVVLVENRREMDNQIVGFEGRSDTGKFIEV 406

Query: 441 NSK-NHNIGDIIKVRITDVKISTLYGELVV 469
             K   N G+++KV I    IS   G L+ 
Sbjct: 407 TCKEKRNPGELVKVEI----ISHSKGRLIA 432


>gi|261837715|gb|ACX97481.1| ATP-binding protein [Helicobacter pylori 51]
          Length = 437

 Score =  244 bits (622), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 146/436 (33%), Positives = 239/436 (54%), Gaps = 21/436 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + ++++ GC MN  DS  +        Y+  +    ADLI++NTC +REK   K++S +G
Sbjct: 2   KVYIETMGCAMNSRDSEHLLSELSKLDYKETSDPKAADLILINTCSVREKPERKLFSEIG 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           +   +K    K G      V GC A   G +IL+++P V+ V+G +   ++ +++ + + 
Sbjct: 62  QFAKIKKPNAKIG------VCGCTASHMGADILKKAPSVSFVLGARNVSKISQVIHKEKA 115

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            +  +D D S    FE        + +K  + + L I  GCDK C +C+VP+TRG EIS 
Sbjct: 116 VEVAIDYDESAY-AFE-------FFEKKAQIRSLLNISIGCDKKCAYCIVPHTRGKEISI 167

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE--KCTFSDLLYSLSEIKGLVRL 263
            +  ++ EA KL  NG  E+ LLGQNVN + G     E  K  FSDLL  LSEI+G+ R+
Sbjct: 168 PMDLILKEAEKLASNGTKELMLLGQNVNNY-GVRFSNEHAKVDFSDLLDKLSEIQGIERI 226

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+T+ HP  M+D  ++       +   +H+P+QSGS  +LK M R ++   +   ++R++
Sbjct: 227 RFTSPHPLHMNDAFLERFAKNSKVCKSIHMPLQSGSSAVLKMMRRGYSKEWFLNRVERLK 286

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           ++ P++ IS+D IVGFP E+D DF  TM++++K+ +   +SF YSPR  T      E+V 
Sbjct: 287 ALVPEVGISTDIIVGFPNESDKDFEDTMEVLEKVHFDTLYSFIYSPRPFTEAGAWKERVP 346

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV---GRSPWLQSVVL 440
             V + RL  LQ + +E         VG+   VL+E   +   ++V   GRS   + + +
Sbjct: 347 LEVSSSRLERLQNRHKEILEEKAKLEVGKTHVVLVENRREINNQIVGFEGRSDTGKFIEV 406

Query: 441 NSK-NHNIGDIIKVRI 455
             K   N G++++V I
Sbjct: 407 ACKEKRNPGELVRVEI 422


>gi|308497096|ref|XP_003110735.1| hypothetical protein CRE_04500 [Caenorhabditis remanei]
 gi|308242615|gb|EFO86567.1| hypothetical protein CRE_04500 [Caenorhabditis remanei]
          Length = 561

 Score =  244 bits (622), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 163/477 (34%), Positives = 249/477 (52%), Gaps = 44/477 (9%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR-N 89
           +YGCQMNV D   +  +    G+   +  + AD+++L TC IR+ A +KV++ L  IR N
Sbjct: 85  TYGCQMNVSDMEIVRSIMSQYGFVESDQKEKADIVLLMTCSIRDGAEKKVWNQLKLIRSN 144

Query: 90  LKNSRIKEG---------GDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140
             N R   G            +  + GC+A+    ++L +  +VN+V GP +Y  LP L+
Sbjct: 145 SVNKRQIVGVLGLFSVLMNAKISYLTGCMAERVRHDLLEKRNLVNIVAGPDSYRDLPRLV 204

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
             A  G   ++   S+++ +  +  +      +   TAF++I  GCD  CT+CVVP+TRG
Sbjct: 205 AVASGGSNAINVQLSLDETYAEVQPIRVDAESR---TAFISIMRGCDNMCTYCVVPFTRG 261

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG--------------LDGEKC- 245
            E SR +  +V+E R+L D G  +ITLLGQNVN++R                 + G K  
Sbjct: 262 RERSRPIDSIVEEVRRLRDQGYKQITLLGQNVNSYRDMTSMDFPMNPSTTEDRVPGFKTV 321

Query: 246 --------TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQS 297
                   TF+ LL  +++    VR R+T+ HP+D    LI+       L   LHLP QS
Sbjct: 322 YKPKSGGLTFTSLLEKVADAAPDVRFRFTSPHPKDFPMQLIELIASRTNLCKQLHLPAQS 381

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
           G D  L  M R ++   Y +++D IR + P+++++SDFI GF GET++  + T+ L+ ++
Sbjct: 382 GDDETLDRMGRGYSRDLYLRLVDDIRIILPNVSLTSDFIAGFCGETEEAHQNTLSLIREV 441

Query: 358 GYAQAFSFKYSPRLGTPGSNML-EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEV 416
           GY+  F F YS R  T   + L + V ENVKA R L L    RE+ +  N   +G    V
Sbjct: 442 GYSFCFVFPYSMRGKTRAHHRLTDDVPENVKARRHLDLTTVFREEAMKLNQKLIGTEQTV 501

Query: 417 LIEKHGKEKGKLV---GRSP-WLQSVVLNSKNH-NIGDIIKVRITDVKISTLYGELV 468
           L+E  GK K  +    GR+   +++V  NSK+  N G   KV IT+    TL  E +
Sbjct: 502 LLE--GKSKRDVAFSHGRTDGGVKAVFDNSKSQLNPGQYAKVLITEANSQTLKAEFI 556


>gi|308061622|gb|ADO03510.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Helicobacter
           pylori Cuz20]
          Length = 437

 Score =  243 bits (621), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 144/435 (33%), Positives = 239/435 (54%), Gaps = 19/435 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + ++++ GC MN  DS  +        Y+  +    ADLI++NTC +REK   K++S +G
Sbjct: 2   KVYIETMGCAMNSRDSEHLLSELSKLDYKETSDPKAADLILINTCSVREKPERKLFSEIG 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           +   +K    K G      V GC A   G +IL+++P V+ V+G +   ++ +++ + + 
Sbjct: 62  QFAKIKKPNAKIG------VCGCTASHMGADILKKAPSVSFVLGARNVSKISQVIHKEKA 115

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            +  +D D S    FE        + +K  + + L I  GCDK C +C+VP+TRG EIS 
Sbjct: 116 VEVAIDYDESAY-AFE-------FFEKKAQIRSLLNISIGCDKKCAYCIVPHTRGKEISI 167

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-GLDGEKCTFSDLLYSLSEIKGLVRLR 264
            +  ++ EA KL  NG  E+ LLGQNVN +  +   +  K  FSDLL  LSEI+G+ R+R
Sbjct: 168 PMDLILKEAEKLASNGTKELMLLGQNVNNYGARFSSEHAKVDFSDLLDKLSEIQGIERIR 227

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +T+ HP  M+D  ++       +   +H+P+QSGS  +LK M R ++   +   ++R+++
Sbjct: 228 FTSPHPLHMNDAFLERFAKNPKVCKSIHMPLQSGSSAVLKMMRRGYSKEWFLNRVERLKA 287

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           + P++ IS+D IVGFP E+D DF  TM++++K+ +   +SF YSPR  T      E+V  
Sbjct: 288 LVPEVGISTDIIVGFPNESDKDFEDTMEVLEKVRFDTLYSFIYSPRPFTEAGAWKERVPL 347

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV---GRSPWLQSVVLN 441
            V + RL  LQ + +E         VG+   VL+E   +   ++V   GRS   + + + 
Sbjct: 348 EVSSSRLERLQNRHKEILEEKAKLEVGKAHVVLVENRREIDNQIVGFEGRSDTGKFIEVA 407

Query: 442 SK-NHNIGDIIKVRI 455
            K   N G++++V I
Sbjct: 408 CKEKRNPGELVRVEI 422


>gi|195330093|ref|XP_002031743.1| GM26169 [Drosophila sechellia]
 gi|194120686|gb|EDW42729.1| GM26169 [Drosophila sechellia]
          Length = 583

 Score =  243 bits (621), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 150/470 (31%), Positives = 246/470 (52%), Gaps = 39/470 (8%)

Query: 32  YGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLK 91
           YGCQMN  D+  +  +    GY R    ++AD+I+L TC +R+ A +++++ L  +R +K
Sbjct: 99  YGCQMNTNDTEVVFSILKENGYMRCQEPEEADVIMLVTCAVRDGAEQRIWNRLKHLRAMK 158

Query: 92  NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR-FGKRVV 150
           N R      L + + GC+A+   E++L +   V+V+ GP +Y  LP LL  +R +G   +
Sbjct: 159 NKRSTRRHPLQLTLLGCMAERLKEKLLEQEQCVDVIAGPDSYKDLPRLLAISRHYGNSAI 218

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
           +   S+++ +  +  V          TAF++I  GCD  CT+C+VP+TRG E SR L+ +
Sbjct: 219 NVLLSLDETYADVMPVRLN---SESPTAFVSIMRGCDNMCTYCIVPFTRGRERSRPLASI 275

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK---------------------CTFSD 249
           V E + L + GV E+TLLGQNVN++R +    E+                       F+ 
Sbjct: 276 VAEVKALAEQGVKEVTLLGQNVNSYRDRSAQEEQESLKATPVPGFSTVYKPKAGGTPFAA 335

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
           LL S+++    +R+R+T+ HP+D SD +++   D   +   LHLP QSG+ ++L+ M R 
Sbjct: 336 LLRSVAQAVPEMRIRFTSPHPKDFSDEVLEVIRDHPNVCKQLHLPAQSGNTQVLERMRRG 395

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369
           ++   Y +++  IR   PD+ +SSDFI GF GET+++F+ T  L+ ++ Y  A+ F YS 
Sbjct: 396 YSREAYLELVQHIRQFLPDVGLSSDFICGFCGETEEEFQDTESLIQQVQYNVAYLFAYSM 455

Query: 370 RLGTPGSNML-EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGK 427
           R  T       + V  NVK ERL  + +  R+     +    G+   +LIE K  +    
Sbjct: 456 REKTTAHRRYKDDVPINVKNERLKRMVQVFRDGAKQLHRKMEGKEQLILIEGKSKRSDSH 515

Query: 428 LVGRSPWLQSVVLNS------------KNHNIGDIIKVRITDVKISTLYG 465
             GR+     V++ S            K+  +GD + VRI +     L G
Sbjct: 516 WFGRNDANIKVIVPSIEVPISGDSTARKSFGVGDFLAVRIEESNSQVLKG 565


>gi|308182443|ref|YP_003926570.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Helicobacter
           pylori PeCan4]
 gi|308064628|gb|ADO06520.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Helicobacter
           pylori PeCan4]
          Length = 437

 Score =  243 bits (621), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 146/436 (33%), Positives = 239/436 (54%), Gaps = 21/436 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + ++++ GC MN  DS  +        Y+  N    ADLI++NTC +REK   K++S +G
Sbjct: 2   KVYIETMGCAMNSRDSDHLLSELSKLDYKETNDPKTADLILINTCSVREKPERKLFSEIG 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           +   +K    K G      V GC A   G +IL+++P V+ V+G +   ++ +++ + + 
Sbjct: 62  QFAKIKKPNAKIG------VCGCTASHMGADILKKAPSVSFVLGARNVSKISQVIHKEKA 115

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            +  +D D S    FE        + +K  + + L I  GCDK C +C+VP+TRG E+S 
Sbjct: 116 VEVAIDYDESAY-AFE-------FFEKKAQIRSLLNISIGCDKKCAYCIVPHTRGKELSI 167

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE--KCTFSDLLYSLSEIKGLVRL 263
            +  ++ EA KL +NG  E+ LLGQNVN + G     E  K  FSDLL  LSEI G+ R+
Sbjct: 168 PMDLILKEAEKLANNGTKELMLLGQNVNNY-GVRFSSEHAKVDFSDLLDKLSEISGIERI 226

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+T+ HP  M+D  ++       +   +H+P+QSGS  +LK M R ++   +   ++R++
Sbjct: 227 RFTSPHPLHMNDAFLERFAKNPKVCKSIHMPLQSGSSAVLKMMRRGYSKEWFLNRVERLK 286

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           ++ P++ IS+D IVGFP E+D DF  TM++++K+ +   +SF YSPR  T      E+V 
Sbjct: 287 ALVPEVGISTDIIVGFPNESDKDFEDTMEVLEKVRFDTLYSFIYSPRPFTEAGAWKERVP 346

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV---GRSPWLQSVVL 440
             V + RL  LQ + +E         VG+   VL+E   +   ++V   GRS   + + +
Sbjct: 347 LEVSSSRLERLQNRHKEILEEKAKLEVGKTHVVLVENRREIDNQIVGFEGRSDTGKFIEV 406

Query: 441 NSK-NHNIGDIIKVRI 455
             K   N G++++V I
Sbjct: 407 ACKEKRNPGELVRVEI 422


>gi|148656015|ref|YP_001276220.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Roseiflexus
           sp. RS-1]
 gi|229890636|sp|A5UUG7|MIAB_ROSS1 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|148568125|gb|ABQ90270.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Roseiflexus sp. RS-1]
          Length = 476

 Score =  243 bits (621), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 158/449 (35%), Positives = 242/449 (53%), Gaps = 27/449 (6%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +R++V + GCQMNV DS R+E      GY      +DA  IVLN+C +R  A E++   L
Sbjct: 26  RRYYVWTVGCQMNVSDSERLEAALQGVGYAPAERPEDASFIVLNSCSVRASAEERILGKL 85

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILR-RSPIVNVVVGPQTYYRLPELLERA 143
             ++ LK    ++  D  VV+ GC+     + I + R P+V+  V P     + E+L  A
Sbjct: 86  SEVQRLK----RKHPDTKVVLWGCMVGPGNQSIFQSRLPMVDHFVSPSA---VDEVLALA 138

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
                  +  Y +E+    ++  D        V+  + IQ GC+  C+FCV+P  RG E 
Sbjct: 139 ------PNPIYQLEEPALPVARWD-----HPPVSVHVPIQYGCNMSCSFCVIPLRRGRER 187

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR L ++V+E R+++  G  EITLLGQ V++W G  L G +   +DLL ++ +I GL+RL
Sbjct: 188 SRPLDEIVEECRRIVARGAKEITLLGQIVDSW-GHDLPG-RPDLADLLRAVHDIPGLLRL 245

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+ TSHP  M+D LI A  +L   MP ++LPVQ+G D +LK M R +T   YR +I +IR
Sbjct: 246 RFLTSHPAWMTDRLIAAVAELPRCMPDINLPVQAGDDALLKIMRRGYTVQRYRDLIAKIR 305

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM----L 379
              PD+++++D IVG PGET + F  T  L++ I + +     +S R GT  ++M     
Sbjct: 306 DAIPDVSLTTDVIVGHPGETRERFEGTKRLLEDIRFDKVHIAAFSSRPGTRAADMELDPT 365

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV 439
             V E  K  R + L++   +     N   + Q +EVL+E  G+ KGK  GR+P  + V 
Sbjct: 366 LAVPEGEKQLRRIELERLQEQIAAERNARFLHQTVEVLVE--GEHKGKWRGRTPGNKLVF 423

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
            +  +   G + +V IT     +L G L 
Sbjct: 424 FSDPDDWTGRLARVIITHTGPWSLQGVLA 452


>gi|83281193|dbj|BAD15110.2| similar to CDK5 regulatory subunit-associated protein [Nicotiana
           tabacum]
          Length = 623

 Score =  243 bits (621), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 167/496 (33%), Positives = 255/496 (51%), Gaps = 51/496 (10%)

Query: 22  IVPQ-RFFVKSYGCQMNVYDSLRMEDMFFSQGY-ERVNSMDDADLIVLNTCHIREKAAEK 79
           ++P+ R + ++YGCQMNV D   +  +  + GY E V   ++A++I +NTC IR+ A  K
Sbjct: 109 VMPRGRIYHETYGCQMNVNDMEIVLSIMKNAGYTESVEVPENAEIIFINTCAIRDNAELK 168

Query: 80  VYS------FLGR--IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ 131
           V+       FL R    N+ + R +      V V GC+A+   ++IL    +V+VV GP 
Sbjct: 169 VWQRLNYFWFLKRQWKSNVASGRSQSAHPPKVSVLGCMAERLKDKILDSDKMVDVVCGPD 228

Query: 132 TYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCT 191
            Y  LP LLE   +G++ ++T  S+E+ +  ++ V    N    ++AF+++  GC+  C+
Sbjct: 229 AYRDLPRLLEEVDYGQKGINTLLSLEETYADINPVRISKN---SISAFVSVMRGCNNMCS 285

Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA----------------W 235
           FC+VP+TRG E SR +  +V E  +L   GV E+TLLGQNVN+                W
Sbjct: 286 FCIVPFTRGRERSRPVESIVKEVAELWKEGVKEVTLLGQNVNSYNDTSGVENPAEPAVSW 345

Query: 236 RGKGLDGEKCT-------FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLM 288
                    C        F+DLL  L+     +R RYT+ HP+D  D L+    D   + 
Sbjct: 346 ELSDGFSSMCKVKHVGLRFADLLDRLATEFPEMRFRYTSPHPKDFPDDLLYVMRDRYNIC 405

Query: 289 PYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFR 348
             +HLP QSGS  +L+ M R +T   Y  ++ +IR + PD+ ISSDFI GF GET++D  
Sbjct: 406 KSIHLPAQSGSSAVLERMRRGYTREAYLDLVKKIRDIIPDMGISSDFICGFCGETEEDHE 465

Query: 349 ATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFND 407
            T+ LV  + Y  A+ F YS R  T      ++ V ++VK  RL  L +  R       D
Sbjct: 466 DTLSLVKAVCYDMAYMFAYSMREKTHAHRKYVDDVPDDVKQRRLTELIEAFRGSTGQNYD 525

Query: 408 ACVGQIIEVLIEKHGKEK--GKLVGRS-----------PWLQSVVLNSK-NHNIGDIIKV 453
           + +G +  VL+E   K     +L+G+S           P    V  N K N  IGD ++V
Sbjct: 526 SKIGTLQLVLVEGPNKRAPDTELIGKSDRGHRVSFTNLPIPDKVDNNGKRNPKIGDYVEV 585

Query: 454 RITDVKISTLYGELVV 469
            IT    ++L+GE + 
Sbjct: 586 HITKSTRASLFGEALA 601


>gi|332297280|ref|YP_004439202.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Treponema
           brennaborense DSM 12168]
 gi|332180383|gb|AEE16071.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Treponema
           brennaborense DSM 12168]
          Length = 470

 Score =  243 bits (620), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 151/482 (31%), Positives = 257/482 (53%), Gaps = 60/482 (12%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           +F ++YGCQMN  +S  +E +  ++G+   ++ + AD+ ++NTC +R  A  +++  LG 
Sbjct: 3   YFFETYGCQMNKAESASLEQLLIARGWTASDTPESADMAIINTCSVRATAENRIFGRLGW 62

Query: 87  I----------RNLKNSRIKEGG--------DLLVVVAGCVAQAEGEEILRRSPIVNVVV 128
                      ++ KN+   +           L +VV GC+A+   + + ++ P+++ VV
Sbjct: 63  FSALKAVRSGSKDAKNASFPDAAREFASGRPPLTLVVTGCMAERLLDSLQKQYPVIDYVV 122

Query: 129 G---PQTYYRLPELLERARFGKRVVDTD--YSVEDKFERLSIVDGGYNRKRGVTAFLTIQ 183
           G    Q +  + + +E+ R    VVD +  YS    F  +S   G +      TAF+ I 
Sbjct: 123 GNFQKQHFQDIIDAVEQQR-APFVVDEEPVYS----FAPVSWEPGAF------TAFVPIM 171

Query: 184 EGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR------- 236
            GC+ FCT+C+VPY RG E+SRS + ++ E  +L  + V EITLLGQNVN++R       
Sbjct: 172 HGCNNFCTYCIVPYVRGREVSRSPADILSELDQLSAHNVREITLLGQNVNSYRWDCNAET 231

Query: 237 GKGLDGEKCT--------FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLM 288
           G    G+            +D L   +   G VR  + +SHP+D+SD LI       VL 
Sbjct: 232 GAAETGDSAVDFPALVQLIADHLRKTASPIGWVR--FMSSHPKDLSDRLIDVIAREPVLC 289

Query: 289 PYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFR 348
            ++HLPVQ GS  +L+ MNRR+T  +Y  ++ RIR+  PD ++++D ++GFPGE D DF 
Sbjct: 290 RHIHLPVQHGSSDVLRRMNRRYTREQYLDLVSRIRTKLPDASLTTDILIGFPGENDADFE 349

Query: 349 ATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDA 408
            T+ L++ + Y  A+ + Y+PR GTP +    Q+    K  RL    K++ + Q+    A
Sbjct: 350 QTVSLMESVRYQAAYMYYYNPREGTPAAEYDGQIPLETKKSRL----KRIIDMQLEITRA 405

Query: 409 C----VGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTL 463
                +G  ++VL E   ++  G+L+G++   + VV  +    IG  ++V + ++  +T+
Sbjct: 406 ETAKRLGSTVKVLAESVSRDNPGELLGKTEQDERVVFAAPRSCIGTFVQVLLVELTGNTI 465

Query: 464 YG 465
            G
Sbjct: 466 RG 467


>gi|269837050|ref|YP_003319278.1| RNA modification enzyme, MiaB family [Sphaerobacter thermophilus
           DSM 20745]
 gi|269786313|gb|ACZ38456.1| RNA modification enzyme, MiaB family [Sphaerobacter thermophilus
           DSM 20745]
          Length = 460

 Score =  243 bits (620), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 150/449 (33%), Positives = 239/449 (53%), Gaps = 26/449 (5%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +R+ + + GCQMN  +S +   M    GY + +  ++AD+I++N+C +R+ A +KV   L
Sbjct: 21  KRYCIWTIGCQMNEAESAKAAAMLSQAGYLQTHLEEEADVIIVNSCVVRQAAEDKVAGKL 80

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL----PELL 140
           G +  LK  R     D+ + + GC+   + + +  R P V++  GP  + RL    PEL 
Sbjct: 81  GSLARLKRVR----PDVRIALTGCMVTGQEQALAERFPHVDLFYGPSQFERLVEIAPELA 136

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
                    VDTD +    F +             VTAF+ I  GC+  C++C+VPY RG
Sbjct: 137 H--------VDTDLAELPHFYQPDAAGSD------VTAFVPIIYGCNFVCSYCIVPYRRG 182

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E SR +++V+ E  +L + GV E+TLLGQ VNA+ G  L G     +DLL +++EI G+
Sbjct: 183 RERSRPMAEVIAEVERLAERGVKEVTLLGQTVNAY-GHDLPGSP-DLADLLTAVNEIPGI 240

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+ TSHP+ MSD +++A   L     +++LPVQ+G D +L+ M R +T   YR+ I 
Sbjct: 241 ERIRFLTSHPKYMSDRIVQAVATLPKACEHINLPVQAGDDEVLRRMRRTYTVDFYRERIA 300

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
            IR   P + +S+D IVGFPGET++ F+ T+DL+ ++   +     YSPR  T  +   +
Sbjct: 301 YIRETIPGVTVSTDIIVGFPGETEEQFQRTLDLLAELRLDKVHVAMYSPRPRTLSARWED 360

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440
            +  + K  R   ++K   +     N   +G   E+L++  G  KG+  GR+     V  
Sbjct: 361 DIPWDEKRRRHQAVEKLQAQILGERNRGYLGATFEILVD--GMAKGRWRGRTRGNDLVFF 418

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELVV 469
            +     G  + VRIT+     L GE V 
Sbjct: 419 EAPGDWKGKFVDVRITEASPWYLLGEPVA 447


>gi|208434215|ref|YP_002265881.1| conserved hypothetical ATP-binding protein [Helicobacter pylori
           G27]
 gi|229890642|sp|B5ZA35|MIAB_HELPG RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|208432144|gb|ACI27015.1| conserved hypothetical ATP-binding protein [Helicobacter pylori
           G27]
          Length = 437

 Score =  243 bits (620), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 144/435 (33%), Positives = 239/435 (54%), Gaps = 19/435 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + ++++ GC MN  DS  +        Y+  +    ADLI++NTC +REK   K++S +G
Sbjct: 2   KVYIETMGCAMNSRDSEHLLSELSKLDYKETSDPKTADLILINTCSVREKPERKLFSEIG 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           +   +K    K G      V GC A   G +IL+++P V+ V+G +   ++ +++ + + 
Sbjct: 62  QFAKIKKPNAKIG------VCGCTASHMGADILKKAPSVSFVLGARNVSKISQVIHKEKA 115

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            +  +D D S    FE        + +K  + + L I  GCDK C +C+VP+TRG EIS 
Sbjct: 116 VEVAIDYDESAY-AFE-------FFEKKAQIRSLLNISIGCDKKCAYCIVPHTRGKEISI 167

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-GLDGEKCTFSDLLYSLSEIKGLVRLR 264
            +  ++ EA KL +NG  E+ LLGQNVN +  +   +  K  FSDLL  LSEI G+ R+R
Sbjct: 168 PMDLILKEAEKLANNGTKELMLLGQNVNNYGARFSSEHAKVDFSDLLDKLSEISGIERIR 227

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +T+ HP  M+D  ++       +   +H+P+QSGS  +LK M R ++   +   ++R+++
Sbjct: 228 FTSPHPLHMNDGFLERFAKNPKVCKSIHMPLQSGSSAVLKMMRRGYSKEWFLNRVERLKA 287

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           + P++ IS+D IVGFP E+D DF  TM++++K+ +   +SF YSPR  T      E+V  
Sbjct: 288 LVPEVGISTDIIVGFPNESDKDFEDTMEVLEKVRFDTLYSFIYSPRPFTEAGAWKERVPL 347

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV---GRSPWLQSVVLN 441
            V + RL  LQ + +E         VG+   VL+E   +   ++V   GRS   + + + 
Sbjct: 348 EVSSSRLERLQNRHKEILEEKAKLEVGKTHVVLVENRREINNQIVGFEGRSDTGKFIEVA 407

Query: 442 SK-NHNIGDIIKVRI 455
            K   N G++++V I
Sbjct: 408 CKEKRNPGELVEVEI 422


>gi|332673110|gb|AEE69927.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Helicobacter pylori 83]
          Length = 437

 Score =  243 bits (620), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 146/436 (33%), Positives = 239/436 (54%), Gaps = 21/436 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + ++++ GC MN  DS  +        Y+  +    ADLI++NTC +REK   K++S +G
Sbjct: 2   KVYIETMGCAMNSRDSEHLLSELSKLDYKETSDPKIADLILINTCSVREKPERKLFSEIG 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           +   +K    K G      V GC A   G +IL+++P V+ V+G +   ++ +++ + + 
Sbjct: 62  QFAKIKKPNAKIG------VCGCTASHMGADILKKAPSVSFVLGARNVSKISQVIHKEKA 115

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            +  +D D S    FE        + +K  + + L I  GCDK C +C+VP+TRG EIS 
Sbjct: 116 VEVAIDYDESAY-AFE-------FFEKKAQIRSLLNISIGCDKKCAYCIVPHTRGKEISI 167

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE--KCTFSDLLYSLSEIKGLVRL 263
            +  ++ EA KL  NG  E+ LLGQNVN + G     E  K  FSDLL  LSEI+G+ R+
Sbjct: 168 PMDLILKEAEKLASNGTKELMLLGQNVNNY-GTRFSSEHAKVDFSDLLDKLSEIQGIERI 226

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+T+ HP  M+D  ++       +   +H+P+QSGS  +LK M R ++   +   ++R++
Sbjct: 227 RFTSPHPLHMNDAFLERFAKNPKVCKSIHMPLQSGSSAVLKMMRRGYSKEWFLNRVERLK 286

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           ++ P++ IS+D IVGFP E+D DF  TM++++K+ +   +SF YSPR  T      E+V 
Sbjct: 287 ALVPEVGISTDIIVGFPNESDKDFEDTMEVLEKVRFDTLYSFIYSPRPFTEAGAWKERVP 346

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV---GRSPWLQSVVL 440
             V + RL  LQ + +E         VG+   VL+E   +   ++V   GRS   + + +
Sbjct: 347 LEVSSSRLERLQNRHKEILEEKAKLEVGKTHVVLVENRREINNQIVGFEGRSDTGKFIEV 406

Query: 441 NSK-NHNIGDIIKVRI 455
             K   N G++++V I
Sbjct: 407 ACKEKRNPGELVRVEI 422


>gi|269797947|ref|YP_003311847.1| MiaB-like tRNA modifying enzyme [Veillonella parvula DSM 2008]
 gi|269094576|gb|ACZ24567.1| MiaB-like tRNA modifying enzyme [Veillonella parvula DSM 2008]
          Length = 431

 Score =  243 bits (620), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 144/424 (33%), Positives = 236/424 (55%), Gaps = 18/424 (4%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N YD+  M+ +F    YE V+  + AD+ V+NTC +     +K        R L
Sbjct: 8   TLGCRVNQYDTDAMKGLFLQNNYEAVDFDEKADIYVINTCSVTNMGEKKS-------RQL 60

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
                ++  D  V+V GC AQ + + I      VN+V+G     ++ EL+E+    +R +
Sbjct: 61  IRKAKRQNEDAYVIVTGCYAQLDPDAIAAIDG-VNLVIGTNNRSKIVELVEQLESTERQI 119

Query: 151 DT--DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           +   D   E  FE + +     ++ R   AF+ IQEGC+ +C FC++PYTRG   SR + 
Sbjct: 120 NAVRDIMKESNFEEMPLFGNESDKTR---AFMKIQEGCNNYCAFCIIPYTRGKLKSRKVD 176

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
            +V EA++L+D+G  EI L G ++  + G  L G + T +D++ +L EI  L R+R+ + 
Sbjct: 177 DIVQEAKRLVDHGFHEIVLTGIHLGNY-GVELPG-RPTLADVVKALLEIPNLYRIRFGSI 234

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
              ++SD L++       + P+LHLP+Q+GSD +LK M R +T  EY+ +I  +RS   D
Sbjct: 235 ESVEVSDELVELMATNKRVCPHLHLPLQAGSDHVLKLMKRHYTLQEYKDLITSLRSRIKD 294

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           ++I++D I GFP ETD+DF  T++ V +IG+    +F YS R GTP + M +QV E VK 
Sbjct: 295 LSITTDIIAGFPQETDEDFEETLNTVREIGFTHIHAFPYSIREGTPAATMADQVPEAVKK 354

Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG-RSPWLQSVVLNSKNHNI 447
            R+  L    +     +  + +G+  E+LIEK  +E G  +G  + ++   V +     I
Sbjct: 355 TRVALLNGLSQSGYERYAKSRIGKPGEILIEK--EENGYYMGLTNEYINGKVKSDGTRKI 412

Query: 448 GDII 451
           GD++
Sbjct: 413 GDLV 416


>gi|297379491|gb|ADI34378.1| RNA modification enzyme, MiaB family [Helicobacter pylori v225d]
          Length = 437

 Score =  243 bits (620), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 146/436 (33%), Positives = 238/436 (54%), Gaps = 21/436 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + ++++ GC MN  DS  +        Y+  +    ADLI++NTC +REK   K++S +G
Sbjct: 2   KVYIETMGCAMNSRDSEHLLSELSKLDYKETSDPKAADLILINTCSVREKPERKLFSEIG 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           +   +K    K G      V GC A   G +IL+++P V+ V+G +   ++ +++ + + 
Sbjct: 62  QFAKIKKPNAKIG------VCGCTASHMGADILKKAPSVSFVLGARNVSKISQVIHKEKA 115

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            +  +D D S    FE        + +K  + + L I  GCDK C +C+VP+TRG EIS 
Sbjct: 116 VEVAIDYDESAY-AFE-------FFEKKAQIRSLLNISIGCDKKCAYCIVPHTRGKEISI 167

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE--KCTFSDLLYSLSEIKGLVRL 263
            +  ++ EA KL  NG  E+ LLGQNVN + G     E  K  FSDLL  L EI+G+ R+
Sbjct: 168 PMDLILKEAEKLASNGTKELMLLGQNVNNY-GTRFSSEHAKVDFSDLLDKLGEIQGIERI 226

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+T+ HP  MSD  ++       +   +H+P+QSGS  +LK M R ++   +   ++R++
Sbjct: 227 RFTSPHPLHMSDAFLERFAKNPKVCKSIHMPLQSGSSAVLKMMRRGYSKEWFLNRVERLK 286

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           ++ P++ IS+D IVGFP E+D DF  TM++++K+ +   +SF YSPR  T      E+V 
Sbjct: 287 ALVPEVGISTDIIVGFPNESDKDFEDTMEVLEKVRFDTLYSFIYSPRPFTEAGAWKERVP 346

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV---GRSPWLQSVVL 440
             V + RL  LQ + +E         VG+   VL+E   +   ++V   GRS   + + +
Sbjct: 347 LEVSSSRLERLQNRHKEILEEKAKLEVGKTHVVLVENRREIDNQIVGFEGRSDTGKFIEV 406

Query: 441 NSK-NHNIGDIIKVRI 455
             K   N G++++V I
Sbjct: 407 ACKEKRNPGELVRVEI 422


>gi|307181219|gb|EFN68916.1| CDK5RAP1-like protein [Camponotus floridanus]
          Length = 533

 Score =  243 bits (620), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 159/478 (33%), Positives = 255/478 (53%), Gaps = 43/478 (8%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           Q+ + + YGCQMN+ D+  +  +  S GY+   S+DDAD+I+L TC IR+ A +KV++ L
Sbjct: 38  QKVYFEIYGCQMNINDADIIWSILKSHGYKHTQSVDDADIILLVTCSIRDNAEQKVWNKL 97

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             +  ++  + K    + + + GC+A+    +IL +  +V+V+ GP +Y  LP LL    
Sbjct: 98  EMLNGIRKKKKKNS--IKIGLLGCMAERLKTKILDKGKLVDVIAGPDSYKDLPRLLA-VT 154

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
             +  ++   S ++ +  ++ V    +    V A+++I  GCD  CT+C+VP+TRG E S
Sbjct: 155 DNETAINVVLSFDETYADVTPVRLDQD---SVGAYVSIMRGCDNMCTYCIVPFTRGRERS 211

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWR-----------------GKGL----DGE 243
           R ++ ++DE R+L D GV EITLLGQNVN++R                  KG       +
Sbjct: 212 RPIASILDEVRQLSDQGVKEITLLGQNVNSYRDLSQSEFVVPTDMQTHLAKGFKTVYKNK 271

Query: 244 K--CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
           K    FSDLL  +S I   +R+R+T+ HP+D  D ++    +   +   +HLP QSG+  
Sbjct: 272 KGGLRFSDLLDKVSLINPEIRIRFTSPHPKDFPDEVLHLIAERPNICKQIHLPAQSGNSA 331

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
           +L  M R +T   Y  ++  IR++ PDI +SSDFI GF GET+++F+ T+ L+D++ Y  
Sbjct: 332 VLDRMRRGYTREAYLDLVYHIRNILPDIYLSSDFIAGFCGETEEEFQDTLSLIDEVKYNN 391

Query: 362 AFSFKYSPRLGTPGSNML-EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
           A+ + YS R  T       + V+ +VK ER+  +    R++    N   +GQ   VL+E 
Sbjct: 392 AYLYPYSMREKTTAHRRYKDDVESHVKIERMNRMIMLYRKEVEKLNKVQIGQHQLVLVEG 451

Query: 421 HGKEKGK-LVGRSPWLQSVVLNSKNHNI------------GDIIKVRITDVKISTLYG 465
             K + + L GR+     V+L S    I            GD I  RI +    TL G
Sbjct: 452 PSKRRSEYLQGRNDGNVRVILLSTVTRINRHSATTRQIQPGDYIVARIDNANSQTLRG 509


>gi|332019786|gb|EGI60247.1| CDK5RAP1-like protein [Acromyrmex echinatior]
          Length = 544

 Score =  243 bits (620), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 151/443 (34%), Positives = 241/443 (54%), Gaps = 31/443 (6%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           Q+ + + +GCQMNV D+  +  +  S GY+    +DDAD+++L TC IR+ A +KV+  L
Sbjct: 58  QKVYFEIFGCQMNVNDADIVWSILKSHGYKHTECLDDADIVLLVTCSIRDNAEQKVWHKL 117

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             +  ++N   K+    L +  GC+A+    +IL R  +V+V+ GP +Y  LP LL    
Sbjct: 118 ENLNGVRNK--KKRTTKLPMKIGCMAERLKTKILDRGKLVDVIAGPDSYKDLPRLLA-VT 174

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
             +  ++   S ++ +  ++ V    +      A+++I  GCD  CT+C+VP+TRG E S
Sbjct: 175 DDETAINVLLSFDETYADVTPVRLNQD---STEAYVSIMRGCDNMCTYCIVPFTRGRERS 231

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWR-----------------GKGLD----GE 243
           R ++ ++DE R+L D GV EITLLGQNVN++R                  KG       +
Sbjct: 232 RPIASILDEVRQLSDQGVKEITLLGQNVNSYRDLSKSEFILSPNMETQLAKGFKTVYKNK 291

Query: 244 K--CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
           K    FSDLL  +S I   +R+R+T+ HP+D  D ++    +   +   +HLP QSG+  
Sbjct: 292 KGGLRFSDLLDKVSLINPEIRIRFTSPHPKDFPDEVLHLIAERPNICKQIHLPAQSGNSV 351

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
           IL+ M R +T   Y  ++  IR++ PD+ ISSDFI GF  ET++ F+ T+ L++++ Y  
Sbjct: 352 ILERMRRGYTREAYLDLVYHIRNILPDVYISSDFIAGFCSETEEQFQDTLSLIEEVKYNN 411

Query: 362 AFSFKYSPRLGTPGSNML-EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
           AF F YS R  T       + V+ + K ER+  +    R++    N A +GQ   VL+E+
Sbjct: 412 AFLFAYSMREKTTAHRRYKDDVETHTKTERMNRMIALYRKEVEKLNKAQIGQHQLVLVER 471

Query: 421 HGKEKG-KLVGRSPWLQSVVLNS 442
             K    +L GR+     V+L S
Sbjct: 472 TSKRSDQQLQGRNDGNVRVILPS 494


>gi|302874325|ref|YP_003842958.1| RNA modification enzyme, MiaB family [Clostridium cellulovorans
           743B]
 gi|307689408|ref|ZP_07631854.1| RNA modification enzyme, MiaB family protein [Clostridium
           cellulovorans 743B]
 gi|302577182|gb|ADL51194.1| RNA modification enzyme, MiaB family [Clostridium cellulovorans
           743B]
          Length = 433

 Score =  243 bits (620), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 145/435 (33%), Positives = 247/435 (56%), Gaps = 24/435 (5%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N+Y+S  M + F S+GY+ V+  + A++ V+NTC +     +K   ++ + +  
Sbjct: 7   TLGCRVNIYESEAMTEKFKSEGYDVVDFDEKAEVYVINTCTVTNMGDKKSRQYISKAK-- 64

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPI--VNVVVGPQTYYRLPELLERARFGKR 148
                K+  + +V V GC +Q   +E+   S I  V+VV+G +    +   + RA   K 
Sbjct: 65  -----KKNPEAVVAVVGCYSQTSPDEV---SAIEGVDVVLGTRNKGDIVYYVNRAMDTKE 116

Query: 149 --VVDTDYSVEDKFERLSIVD-GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
             VV  D      FE L I D  G  R     AFL +Q+GC++FC++C++PY RG   S+
Sbjct: 117 KFVVVKDVLRNKVFEELKIEDFEGKTR-----AFLKVQDGCNRFCSYCLIPYARGAVCSK 171

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLR 264
           +   ++DE  KL DNG  EI L G ++ ++   G+D  E+ T  D++  + +I G+ R+R
Sbjct: 172 NPETIIDEVNKLADNGFKEIILSGIHIASY---GVDLEERKTLMDIIEEIHKINGIKRIR 228

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
             +  PR  +D +I+    ++ + P+ HL +QSG D  LK MNR++TA EY   + ++R 
Sbjct: 229 IGSVEPRFFTDEVIEKMASMEKMCPHFHLSLQSGCDATLKRMNRKYTAEEYFNTVVKLRE 288

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             P+++I++D IVGFPGET ++F  T + + ++  A+   FKYSPR GT  ++M + V  
Sbjct: 289 RIPNVSITTDVIVGFPGETAEEFNETFNYLKELRVAKMHIFKYSPRKGTKAADMKDDVHG 348

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
            +K ER   LQ+  RE + +F    +G+ +EVL+E+  K+  + +G +     V+++S  
Sbjct: 349 TIKEERSKLLQELDRENEKNFIQDFIGEKLEVLVEEKLKDDNRYIGYTSNYIKVIIDSTE 408

Query: 445 HNIGDIIKVRITDVK 459
             +G II VR+ + K
Sbjct: 409 DIVGKIITVRLIENK 423


>gi|198415552|ref|XP_002127642.1| PREDICTED: similar to CDK5 regulatory subunit associated protein 1
           [Ciona intestinalis]
          Length = 618

 Score =  243 bits (619), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 155/476 (32%), Positives = 255/476 (53%), Gaps = 42/476 (8%)

Query: 28  FVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRI 87
           + + YGCQMNV D      +    GY++   ++ AD+I+L TC IREKA +K+++ L ++
Sbjct: 120 YFEMYGCQMNVNDGEYAWAILKKAGYKKTTDINTADVIMLVTCSIREKAEDKIWNRLKQL 179

Query: 88  RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF-G 146
           +  K +    G   + ++ GC+A+   ++I+ +   V++V GP  Y  LP LLE+A    
Sbjct: 180 KTHKQNYHTPGYPKIGIL-GCMAERLKKKIVEKEKAVDIVAGPDAYRDLPRLLEQATTDS 238

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
              ++T  SV++ +  +  V    + K   TAF++I  GCD  C++C+VP+TRG E SR 
Sbjct: 239 TTAINTMLSVDETYADIMPVRFDQDSK---TAFVSIMRGCDNMCSYCIVPFTRGRERSRP 295

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWR--------------GKGLDGEKCT------ 246
           ++ +++E R L D G+ ++ LLGQNVN++R              G    G K        
Sbjct: 296 VTSILEEIRILSDQGIKQVNLLGQNVNSYRDLSETQHSAVDAIAGNMSRGFKTIYKPKHG 355

Query: 247 ---FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
              F+DLL  +S++   +R+R+ + HP+D  D +++   + + +   +HLP QSGS  +L
Sbjct: 356 GLRFADLLDRVSQVDPEMRIRFISPHPKDFPDEVLQIISERENICKQIHLPAQSGSSNVL 415

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
             M R HT  +Y  ++DRIR++ P++ +S+D I GF GETD D   T+ L+  + Y  AF
Sbjct: 416 NLMRRGHTREDYLNLVDRIRTLIPNVVLSTDIISGFCGETDSDHEDTLSLMSLVKYEYAF 475

Query: 364 SFKYSPRLGTPG-SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-H 421
            FKYS R  T     M + V E +K++RL  + K  ++   + +   VG+ + VL+EK  
Sbjct: 476 LFKYSIRQKTHAYHKMNDDVPEEIKSQRLQEVIKVYQDVLPTVHQKTVGKTLLVLVEKDK 535

Query: 422 GKEKGKLVGRSPW----------LQSVVLNSKNHNI--GDIIKVRITDVKISTLYG 465
            K    L GR+            + S V +     I  GD I V++T  K ++  G
Sbjct: 536 TKVPNTLQGRTDGNVKVFIPNYDVASSVTSQSTKTICTGDYIAVKVTSYKPNSYRG 591


>gi|167945967|ref|ZP_02533041.1| tRNA-i(6)A37 modification enzyme MiaB [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 242

 Score =  243 bits (619), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 123/245 (50%), Positives = 163/245 (66%), Gaps = 6/245 (2%)

Query: 105 VAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR-VVDTDYSVEDKFERL 163
           V GCVA  EG+ I +R+P V++V GPQT +RLPE++   R     VVD  +   +KF+RL
Sbjct: 3   VGGCVASQEGDAIRQRAPYVDLVFGPQTLHRLPEMIREVRAQHHPVVDVSFPEIEKFDRL 62

Query: 164 SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVC 223
                   R  G TAF++I EGC K+CT+CVVP+TRG EISR    V+ E   L   GV 
Sbjct: 63  P-----EPRAEGPTAFVSIMEGCSKYCTYCVVPFTRGEEISRPFDDVIAEVVGLAAQGVR 117

Query: 224 EITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGD 283
           E+ LLGQNVNA+RG+  DGE    + L+  ++ I G+ R+R+TTSHP + SD LI+A+G 
Sbjct: 118 EVNLLGQNVNAYRGEMYDGETADLALLIEYVAAIDGIERIRFTTSHPLEFSDSLIEAYGR 177

Query: 284 LDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGET 343
           +  L+ ++HLPVQSGSDR+L  M R H A EY+  I ++R VRPDI ISSDFIVGFPG+ 
Sbjct: 178 VPELVSFVHLPVQSGSDRVLAMMKRGHMAIEYKAKIRKLREVRPDITISSDFIVGFPGDD 237

Query: 344 DDDFR 348
              F+
Sbjct: 238 RAGFQ 242


>gi|282850176|ref|ZP_06259555.1| MiaB-like protein [Veillonella parvula ATCC 17745]
 gi|294791828|ref|ZP_06756976.1| Fe-S oxidoreductase [Veillonella sp. 6_1_27]
 gi|294793689|ref|ZP_06758826.1| Fe-S oxidoreductase [Veillonella sp. 3_1_44]
 gi|282579669|gb|EFB85073.1| MiaB-like protein [Veillonella parvula ATCC 17745]
 gi|294455259|gb|EFG23631.1| Fe-S oxidoreductase [Veillonella sp. 3_1_44]
 gi|294457058|gb|EFG25420.1| Fe-S oxidoreductase [Veillonella sp. 6_1_27]
          Length = 431

 Score =  243 bits (619), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 144/424 (33%), Positives = 236/424 (55%), Gaps = 18/424 (4%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N YD+  M+ +F    YE V+  + AD+ V+NTC +     +K        R L
Sbjct: 8   TLGCRVNQYDTDAMKGLFLQNNYEAVDFDEKADIYVINTCSVTNMGEKKS-------RQL 60

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
                ++  D  V+V GC AQ + + I      VN+V+G     ++ EL+E+    +R +
Sbjct: 61  IRKAKRQNEDAYVIVTGCYAQLDPDAIAAIDG-VNLVIGTNNRSKIVELVEQLESTERQI 119

Query: 151 DT--DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           +   D   E  FE + +     ++ R   AF+ IQEGC+ +C FC++PYTRG   SR + 
Sbjct: 120 NAVRDIMKESNFEEMPLYGNESDKAR---AFMKIQEGCNNYCAFCIIPYTRGKLKSRKVD 176

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
            +V EA++L+D+G  EI L G ++  + G  L G + T +D++ +L EI  L R+R+ + 
Sbjct: 177 DIVQEAKRLVDHGFHEIVLTGIHLGNY-GVELPG-RPTLADVVKALLEIPNLYRIRFGSI 234

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
              ++SD L++       + P+LHLP+Q+GSD +LK M R +T  EY+ +I  +RS   D
Sbjct: 235 ESVEVSDELVELMATNKRVCPHLHLPLQAGSDHVLKLMKRHYTLQEYKDLITSLRSRIKD 294

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           ++I++D I GFP ETD+DF  T++ V +IG+    +F YS R GTP + M +QV E VK 
Sbjct: 295 LSITTDIIAGFPQETDEDFEETLNTVREIGFTHIHAFPYSIREGTPAATMADQVPEAVKK 354

Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG-RSPWLQSVVLNSKNHNI 447
            R+  L    +     +  + +G+  E+LIEK  +E G  +G  + ++   V +     I
Sbjct: 355 TRVALLNGLSQSGYERYAKSRIGKPGEILIEK--EENGYYMGLTNEYINGKVKSDGTRKI 412

Query: 448 GDII 451
           GD++
Sbjct: 413 GDLV 416


>gi|121551156|gb|ABM55768.1| MiaB [Pasteuria ramosa]
          Length = 361

 Score =  243 bits (619), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 141/357 (39%), Positives = 207/357 (57%), Gaps = 15/357 (4%)

Query: 117 ILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVE----DKFERLSIVDGGYNR 172
           IL++ P V+++ G    +RLP LLE A F K +V   +S E    ++  RL        R
Sbjct: 11  ILQKYPYVDLLFGTHNIHRLPYLLEDAYFNKEIVVEVWSREGEIVEQIPRL--------R 62

Query: 173 KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNV 232
              + AF+ I  GCDKFCT+C+VPYTRG E SR    +++E ++L + G  E+TLLGQNV
Sbjct: 63  HDQLRAFVNIMYGCDKFCTYCIVPYTRGKERSRQPEDIIEEIKQLAEQGYQEVTLLGQNV 122

Query: 233 NAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLH 292
           NA+ GK  D      S+LL  LS+I  + R+R+TTSHP+D  D LI        L+ + H
Sbjct: 123 NAY-GKDFDKFPYRLSNLLDDLSKI-NISRVRFTTSHPKDCDDELINVLAKRGNLVEHFH 180

Query: 293 LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352
           LPVQSG D ILK M R HT  +Y   + R+R   PDI +++D IVGFPGET++ F  T++
Sbjct: 181 LPVQSGDDTILKRMGRGHTREQYLMFVQRLREAIPDIVLTTDIIVGFPGETEEQFLNTIE 240

Query: 353 LVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQ 412
           L+ ++ +   FSF YSPR GTP ++M   + +  K+ RL  LQ    +  ++ N   +G 
Sbjct: 241 LLKEVQFDAVFSFIYSPRSGTPAADMECNLLDVTKSNRLQYLQTVQNDISLACNKLLIGN 300

Query: 413 IIEVLIEKHGKEK-GKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            +EVL+E   K++  +L GR+   + V     +  IG +  V IT      L+G+++
Sbjct: 301 KLEVLVEGQSKKRQDRLTGRTRTNKLVHFVGSSELIGQLKWVEITSTNSFFLHGQII 357


>gi|229890672|sp|B2USA0|MIAB_HELPS RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
          Length = 437

 Score =  243 bits (619), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 143/435 (32%), Positives = 239/435 (54%), Gaps = 19/435 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + ++++ GC MN  DS  +        Y+  +    ADLI++NTC +REK   K++S +G
Sbjct: 2   KVYIETMGCAMNSRDSEHLLSELSKLDYKETSDPKAADLILINTCSVREKPERKLFSEIG 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           +   +K    K G      V GC A   G +IL+++P V+ V+G +   ++ +++ + + 
Sbjct: 62  QFAKIKKPNAKIG------VCGCTASHMGADILKKAPSVSFVLGARNVSKISQVIHKEKA 115

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            +  +D D S    FE        + +K  + + L I  GCDK C +C+VP+TRG EIS 
Sbjct: 116 VEVAIDYDESAY-AFE-------FFEKKAQIRSLLNISIGCDKKCAYCIVPHTRGKEISI 167

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-GLDGEKCTFSDLLYSLSEIKGLVRLR 264
            +  ++ EA KL  NG  E+ LLGQNVN +  +   +  K  FSDLL  LSEI+G+ R+R
Sbjct: 168 PMDLILKEAEKLASNGTKELMLLGQNVNNYGARFSSEHAKVDFSDLLDKLSEIQGIERIR 227

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +T+ HP  M+D  ++       +   +H+P+QSGS  +LK M R ++   +   ++++++
Sbjct: 228 FTSPHPLHMNDAFLERFAKNPKVCKSIHMPLQSGSSTVLKMMRRGYSKEWFLNRVEKLKA 287

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           + P++ IS+D IVGFP E+D DF  TM++++K+ +   +SF YSPR  T      E+V  
Sbjct: 288 LVPEVGISTDIIVGFPNESDKDFEDTMEVLEKVRFDTLYSFIYSPRPFTEAGAWKERVPL 347

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV---GRSPWLQSVVLN 441
            V + RL  LQ + +E         VG+   VL+E   +   ++V   GRS   + + + 
Sbjct: 348 EVSSSRLERLQNRHKEILEEKAKLEVGKTHVVLVENRREIDNQIVGFEGRSDTGKFIEVA 407

Query: 442 SK-NHNIGDIIKVRI 455
            K   N G++++V I
Sbjct: 408 CKEKRNPGELVRVEI 422


>gi|260655072|ref|ZP_05860560.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Jonquetella anthropi
           E3_33 E1]
 gi|260630183|gb|EEX48377.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Jonquetella anthropi
           E3_33 E1]
          Length = 432

 Score =  243 bits (619), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 149/448 (33%), Positives = 236/448 (52%), Gaps = 25/448 (5%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           +K YGCQMN YD+ +++    + G+   +  + AD ++   C IR+KA  KV+S LGR  
Sbjct: 1   MKVYGCQMNQYDASKIQTALTALGWHETDE-ETADAVIFVACSIRDKAEHKVWSELGRYA 59

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA-RFGK 147
                R +  G   V V  C+AQ  G E+  R P V VV GP+    LP  L  A   G 
Sbjct: 60  E----RWQAEGKPAVAVTSCIAQNVGTEMAGRFPWVRVVSGPRHIGDLPAALSDALDNGN 115

Query: 148 R--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           R  ++D D     + +    V     R     A +TI  GCD FCT+C+VPY RG   SR
Sbjct: 116 RHTLLDDDPRAVRELDVPPSV-----RSFQWKASVTISHGCDNFCTYCIVPYVRGRFASR 170

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK-CTFSDLLYSLSEIKGLVRLR 264
              +++ E R L+  G  EITLLGQNV+ W   GLD      F+DLL  ++   G+  LR
Sbjct: 171 PAEEILAEVRSLVAGGAKEITLLGQNVDTW---GLDCPGGMRFADLLELVAREPGVEWLR 227

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           + TS+P D +  +++       + P ++LP+Q+GS+R+L++MNRR++  EY   +  IR 
Sbjct: 228 FMTSYPTDFTVDVVETMVRHSNICPSINLPIQAGSERVLRAMNRRYSLEEYADTMKLIRD 287

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             P++ ++SD IVGFPGET+++F+ ++  +++  +    +  YSPR GTP + M  Q+  
Sbjct: 288 GLPEVGLTSDLIVGFPGETEEEFQCSLAALERFRFDMVHTAAYSPRQGTPAAKMKNQIPA 347

Query: 385 NVKAERLLCLQKKLREQQVS----FNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440
            VK  RL     ++ + Q S     N + VG+  +VL++    +   +  R+   + V+L
Sbjct: 348 AVKERRL----NEVNDLQTSIARQINQSLVGRTYKVLVDGPAPKGDYMEARTATDKVVLL 403

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                + G  +  +I   +   L G ++
Sbjct: 404 KGAGASFGQFVTAKIDSAESWCLKGTVL 431


>gi|291276480|ref|YP_003516252.1| tRNA modification enzyme MiaB [Helicobacter mustelae 12198]
 gi|290963674|emb|CBG39506.1| Putative tRNA modification enzyme MiaB [Helicobacter mustelae
           12198]
          Length = 417

 Score =  243 bits (619), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 136/374 (36%), Positives = 215/374 (57%), Gaps = 18/374 (4%)

Query: 51  QGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVA 110
           +GYE      +ADLI++NTC +REK   K++S +G+   +K +  K G      V GC A
Sbjct: 9   EGYELTQDAKEADLILINTCSVREKPERKLFSEIGQFTKIKKNGAKIG------VCGCTA 62

Query: 111 QAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGY 170
              GE+I++R+P V+ V+G +   ++ E+L R +  +  VD D S         + D   
Sbjct: 63  SHMGEQIIKRAPSVDFVLGARNVSKITEVLHRPKAVEVAVDYDDST-------YVYD--I 113

Query: 171 NRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQ 230
             + G+ A L I  GCDK C +C+VP+TRG EIS  L  ++ EA KL+  G  EI LLGQ
Sbjct: 114 PHQAGIKALLNISIGCDKKCAYCIVPHTRGKEISIPLDLLLTEANKLVSRGTKEILLLGQ 173

Query: 231 NVNAWRGK-GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMP 289
           NVN +  +  +      F+ LL+ L +I GL R+R+T+ HP  M+D  ++       +  
Sbjct: 174 NVNNYGARFSVPHAPINFTGLLHELGKIDGLERIRFTSPHPLHMNDEFLEEFAQNPKVCK 233

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
            +H+P+QSGS  ILK+M R +T   Y   I+++R++ P++ IS+D IVGFPGE+D DF+ 
Sbjct: 234 SIHIPLQSGSSAILKAMRRGYTKEWYLNRIEKLRALVPEVGISTDIIVGFPGESDADFQD 293

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTPGSNM--LEQVDENVKAERLLCLQKKLREQQVSFND 407
           T+D+++ + +   +SF YSPR  T  ++     +V + V A RL  LQ + +E  V    
Sbjct: 294 TLDVLEAVRFDTMYSFVYSPRPYTESASWGAEREVPKEVAARRLAMLQNRHKEILVEDAK 353

Query: 408 ACVGQIIEVLIEKH 421
             +G++  +L+E +
Sbjct: 354 KEIGKVYTILVENN 367


>gi|308063131|gb|ADO05018.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Helicobacter
           pylori Sat464]
          Length = 437

 Score =  242 bits (618), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 144/435 (33%), Positives = 239/435 (54%), Gaps = 19/435 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + ++++ GC MN  DS  +        Y+  +    ADLI++NTC +REK   K++S +G
Sbjct: 2   KVYIETMGCAMNSRDSEHLLSELSKLDYKETSDPKAADLILINTCSVREKPERKLFSEIG 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           +   +K    K G      V GC A   G +IL+++P V+ V+G +   ++ +++ + + 
Sbjct: 62  QFAKIKKPNAKIG------VCGCTASHMGADILKKAPSVSFVLGARNVSKISQVIHKEKA 115

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            +  +D D S    FE        + +K  + + L I  GCDK C +C+VP TRG EIS 
Sbjct: 116 VEVAIDYDESAY-AFE-------FFEKKAQIRSLLNISIGCDKKCAYCIVPRTRGKEISI 167

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-GLDGEKCTFSDLLYSLSEIKGLVRLR 264
            +  ++ EA KL  NG  E+ LLGQNVN +  +   +  K  FSDLL  LSEI+G+ R+R
Sbjct: 168 PMDLILKEAEKLASNGTKELMLLGQNVNNYGARFSSEHAKVDFSDLLDKLSEIQGIERIR 227

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +T+ HP  M+D  ++       +   +H+P+QSGS+ +LK M R ++   +   ++R+++
Sbjct: 228 FTSPHPLHMNDAFLERFAKNPKVCKSIHMPLQSGSNAVLKMMRRGYSKEWFLNRVERLKA 287

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           + P++ IS+D IVGFP E+D DF  TM++++K+ +   +SF YSPR  T      E+V  
Sbjct: 288 LVPEVGISTDIIVGFPNESDKDFEDTMEVLEKVRFDTLYSFIYSPRPFTEAGAWKERVPL 347

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV---GRSPWLQSVVLN 441
            V + RL  LQ + +E         VG+   VL+E   +   ++V   GRS   + + + 
Sbjct: 348 EVSSSRLERLQNRHKEILEEKAKLEVGKTHVVLVENGREIDNQIVGFEGRSDTGKFIEVA 407

Query: 442 SK-NHNIGDIIKVRI 455
            K   N G++++V I
Sbjct: 408 CKEKRNPGELVRVEI 422


>gi|158320272|ref|YP_001512779.1| MiaB-like tRNA modifying enzyme [Alkaliphilus oremlandii OhILAs]
 gi|158140471|gb|ABW18783.1| MiaB-like tRNA modifying enzyme [Alkaliphilus oremlandii OhILAs]
          Length = 433

 Score =  242 bits (617), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 148/445 (33%), Positives = 251/445 (56%), Gaps = 30/445 (6%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  M ++F  +GYE V+  + AD+ V+NTC +     +K   F+ R +  
Sbjct: 8   TLGCKVNQYETQAMGELFEKEGYEIVSDEEVADVYVINTCTVTNVGDKKSRQFIRRAK-- 65

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV- 149
                +   + ++ V GC AQ   +E+L     VN+V+G     ++ E +E     +++ 
Sbjct: 66  -----RNNEEAIIAVVGCYAQTAPKEVLAIEG-VNIVIGTNERNKIVEAVENCSTEEKIS 119

Query: 150 -VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
            VD    V+ +FE +SIVD     K    AFL IQEGC+++CT+C++PY RG   SR   
Sbjct: 120 LVDDIMKVK-QFEEMSIVD----VKDKTRAFLKIQEGCNQYCTYCIIPYARGPIRSRGPL 174

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI---KGLVRLRY 265
           ++V+E   L+  G  E+ L G +V ++     DG     +DL++ L ++   +GL R+R 
Sbjct: 175 EIVEEVETLVQKGFKEVVLTGIHVASYGKDRSDG-----TDLIHILKQVNGAQGLERIRL 229

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
           ++  P   +D  ++    LD +  + HL +QSG +  LK MNR++TA EY++I  RIR V
Sbjct: 230 SSLEPTLFTDDFLRELSQLDKICDHFHLSLQSGCNATLKRMNRKYTAEEYKEIAGRIRKV 289

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD-- 383
            P++A+++D IVGFPGET+++F  T + +  IG+++   FKYSPR GTP S   EQVD  
Sbjct: 290 YPEVALTTDVIVGFPGETEEEFNTTYEFIKDIGFSEIHVFKYSPRTGTPASKYKEQVDGL 349

Query: 384 -ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRSPWLQSVVLN 441
            ++ ++E+L+ L +K++ Q   +    VG+  +VL E   KE K  + G +     V++ 
Sbjct: 350 TKHYRSEKLIDLGEKMKNQ---YRGQFVGKERKVLFEAISKENKAYMEGYTDNYLKVLVP 406

Query: 442 SKNHNIGDIIKVRITDVKISTLYGE 466
           +     G++  V + ++K   + GE
Sbjct: 407 ASEVVEGELTNVVLKELKEEYILGE 431


>gi|223044380|ref|ZP_03614414.1| conserved hypothetical protein [Staphylococcus capitis SK14]
 gi|222442249|gb|EEE48360.1| conserved hypothetical protein [Staphylococcus capitis SK14]
          Length = 448

 Score =  242 bits (617), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 142/430 (33%), Positives = 245/430 (56%), Gaps = 23/430 (5%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  +  +F    Y+RV+   +AD+ V+NTC +     +K    + R    
Sbjct: 8   TLGCKVNHYETEAIWQLFKEADYDRVDFETNADVFVINTCTVTNTGDKKSRQIIRRA--- 64

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               I++  + +V V GC AQ    EI+   P V+VVVG Q  ++L + +++ +  ++ +
Sbjct: 65  ----IRQNPEAVVCVTGCYAQTSSAEIME-IPGVDVVVGTQDRHKLLDYIDQFQEERQPI 119

Query: 151 DTDYSV--EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           +   ++     +E L +    Y   R   A L IQEGC+ FCTFC++P+ RG+  SR   
Sbjct: 120 NGVGNIMKNRTYEELEV---PYFTDR-TRASLKIQEGCNNFCTFCIIPWARGLMRSRDPE 175

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
           +VV++A +L+++G  EI L G +     G G D +    + LL  L EI+GL R+R ++ 
Sbjct: 176 KVVEQASQLVNSGYKEIVLTGIHTG---GYGQDLKNYNLAQLLRDLDEIEGLERIRISSI 232

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
               ++D +I+  G+ + ++ +LH+P+QSGSD +LK M R++T   + + +  +    PD
Sbjct: 233 EASQLTDEVIEVIGNSNKVVRHLHVPLQSGSDSVLKRMRRKYTMEHFSERLTELHKALPD 292

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           +A++SD IVGFPGET+++F+ T D + K  +++   F YSPR+GTP + M +Q+DE+VK 
Sbjct: 293 LAVTSDVIVGFPGETEEEFQETYDFIVKHQFSELHVFPYSPRIGTPAARMDDQIDESVKN 352

Query: 389 ER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445
           ER   L+ L  +L ++   +      +++EV+ E+ G+E   LVG +     V       
Sbjct: 353 ERVHKLIALSDQLAKE---YTSKFENEVLEVIPEEKGEEPNTLVGYADNYMKVQFEGDES 409

Query: 446 NIGDIIKVRI 455
            IG I+KV+I
Sbjct: 410 LIGQIVKVKI 419


>gi|217033440|ref|ZP_03438870.1| hypothetical protein HP9810_1g54 [Helicobacter pylori 98-10]
 gi|216944145|gb|EEC23573.1| hypothetical protein HP9810_1g54 [Helicobacter pylori 98-10]
          Length = 430

 Score =  242 bits (617), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 144/428 (33%), Positives = 235/428 (54%), Gaps = 19/428 (4%)

Query: 33  GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92
           GC MN  DS  +        Y+  + +  ADLI++NTC +REK   K++S +G+   +K 
Sbjct: 2   GCAMNSRDSEHLLSELSKLDYKETSDLKAADLILINTCSVREKPERKLFSEIGQFAKIKK 61

Query: 93  SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDT 152
              K G      V GC A   G +IL+++P V+ V+G +   ++ +++ + +  +  +D 
Sbjct: 62  PNAKIG------VCGCTASHMGADILKKAPSVSFVLGARNVSKISQVIHKEKAVEVAIDY 115

Query: 153 DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVD 212
           D S    FE        + +K  + + L I  GCDK C +C+VP+TRG EIS  +  ++ 
Sbjct: 116 DESAY-AFE-------FFEKKAQIRSLLNISIGCDKKCAYCIVPHTRGKEISIPMDLILK 167

Query: 213 EARKLIDNGVCEITLLGQNVNAWRGK-GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPR 271
           EA KL  NG  E+ LLGQNVN +  +   +  K  FSDLL  LSEI+G+ R+R+T+ HP 
Sbjct: 168 EAEKLASNGTKELMLLGQNVNNYGARFSSEHAKVDFSDLLDKLSEIQGIERIRFTSPHPL 227

Query: 272 DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAI 331
            M+D  ++       +   +H+P+QSGS  +LK M R ++   +   ++R++++ P++ I
Sbjct: 228 HMNDAFLERFAKNPKVCKSIHMPLQSGSSVVLKMMRRGYSKEWFLNRVERLKALVPEVGI 287

Query: 332 SSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERL 391
           S+D IVGFP E+D DF  TM++++K+ +   +SF YSPR  T      E+V   V + RL
Sbjct: 288 STDIIVGFPNESDKDFEDTMEVLEKVRFDTLYSFIYSPRPFTEAGAWKERVPLEVSSSRL 347

Query: 392 LCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV---GRSPWLQSVVLNSK-NHNI 447
             LQ + +E         VG+   VL+E   +   ++V   GRS   + + +  K   N 
Sbjct: 348 ERLQNRHKEILEEKAKLEVGKTHVVLVENRREINNQIVGFEGRSDTGKFIEVACKEKRNP 407

Query: 448 GDIIKVRI 455
           G++++V I
Sbjct: 408 GELVRVEI 415


>gi|195499798|ref|XP_002097099.1| GE24685 [Drosophila yakuba]
 gi|194183200|gb|EDW96811.1| GE24685 [Drosophila yakuba]
          Length = 583

 Score =  242 bits (617), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 148/470 (31%), Positives = 249/470 (52%), Gaps = 39/470 (8%)

Query: 32  YGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLK 91
           YGCQMN  D+  +  +    GY R    ++AD+I+L TC +R+ A +++++ L  +R +K
Sbjct: 99  YGCQMNTNDTEVVFSILQENGYLRCQEPEEADVIMLVTCAVRDGAEQRIWNRLKHLRAMK 158

Query: 92  NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR-FGKRVV 150
           + R      L + + GC+A+   E++L +   V+V+ GP +Y  LP LL  +R +G   +
Sbjct: 159 SKRSTRRHPLQLTLLGCMAERLKEKLLEQEQCVDVIAGPDSYKDLPRLLAISRHYGNSAI 218

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
           +   S+++ +  +  V          TAF++I  GCD  CT+C+VP+TRG E SR L  +
Sbjct: 219 NVLLSLDETYADVMPVRLN---SESPTAFVSIMRGCDNMCTYCIVPFTRGRERSRPLESI 275

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGK-GLDGEK--------------------CTFSD 249
           V E + L + GV E+TLLGQNVN++R + GL+ ++                      F+ 
Sbjct: 276 VAEVKALAEQGVKEVTLLGQNVNSYRDRSGLEAQESLKATPVPGFSTVYKPKTGGTPFAA 335

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
           LL S+++    +R+R+T+ HP+D SD +++   D   +   LHLP QSG+ ++L+ M R 
Sbjct: 336 LLRSVAQAVPEMRIRFTSPHPKDFSDEVLEVIRDHPNVCKQLHLPAQSGNTQVLERMRRG 395

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369
           ++   Y ++++ IR   P++ +SSDFI GF GET+ +F+ T+ L+ ++ Y  A+ F YS 
Sbjct: 396 YSREAYLELVEHIRQFLPNVGLSSDFICGFCGETEAEFQDTVSLIQQVKYNVAYLFAYSM 455

Query: 370 RLGTPGSNML-EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGK 427
           R  T       + V  NVK +RL  + +  RE     +    GQ   +L+E K  +    
Sbjct: 456 REKTTAHRRYKDNVPLNVKNKRLQRMVQVFREGATQLHRKMEGQEQLILVEGKSKRSDAH 515

Query: 428 LVGRSPWLQSVVLNS------------KNHNIGDIIKVRITDVKISTLYG 465
             GR+     V++ S            ++  +GD + VRI +     L G
Sbjct: 516 WFGRNDANIKVIVPSIDVAISRDPTAKRSFGVGDFLAVRIEESNSQVLKG 565


>gi|326495462|dbj|BAJ85827.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 586

 Score =  241 bits (616), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 166/490 (33%), Positives = 249/490 (50%), Gaps = 49/490 (10%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYER-VNSMDDADLIVLNTCHIREKAAEKVYS-- 82
           R + ++YGCQMNV D   +  +   +GY   V   + A++I +NTC IR+ A +KV+   
Sbjct: 80  RIYHETYGCQMNVNDMEIVLSIMKKEGYNDIVPDPESAEIIFINTCAIRDNAEQKVWQRL 139

Query: 83  ----FLGR--IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL 136
               FL R    N+   R K      + V GC+A+   E+IL    +V+VV GP  Y  L
Sbjct: 140 NYFWFLKRQWKTNVAGGRSKSLRPPKIAVLGCMAERLKEKILDSDKMVDVVCGPDAYRDL 199

Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
           P LL+   +G++ ++T  S+E+ +  ++ V    N    VTAF+++  GC+  C+FC+VP
Sbjct: 200 PRLLQEVDYGQKGINTLLSLEETYADITPVRISDN---SVTAFVSVMRGCNNMCSFCIVP 256

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR----------GKGLD----- 241
           +TRG E SR +S VV E  +L   GV E+ LLGQNVN++           GK        
Sbjct: 257 FTRGRERSRPVSSVVREVGELWYAGVKEVMLLGQNVNSYNDTSEVEELEPGKNWQLSEGF 316

Query: 242 GEKCT-------FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP 294
             +C        F+DLL  LS     +R R+T+ HP+D  D L+    D   +   +HLP
Sbjct: 317 SSRCKVKNTGLRFADLLDQLSLEYPEMRFRFTSPHPKDFPDELLYLMRDRHNICKLIHLP 376

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
            QSGS  +L+ M R +T   Y +++ +IR+V PD+ +SSDFI GF  ET+DD   T+ LV
Sbjct: 377 AQSGSTEVLERMKRGYTREAYLELVQKIRNVIPDVGLSSDFISGFCEETEDDHADTLSLV 436

Query: 355 DKIGYAQAFSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQI 413
             +GY  A+ F YS R  T    N  + V  +VK  RL  L    RE      D+ +G  
Sbjct: 437 RAVGYDMAYMFAYSMREKTHAHRNYEDDVPNDVKQRRLAELINTFRETTRKIYDSQIGTT 496

Query: 414 IEVLIEKHGKE--KGKLVGRSPWLQSVVLNS------------KNHNIGDIIKVRITDVK 459
             VL+E   K   + +L G++     V   S            +   +GD ++V+I    
Sbjct: 497 QVVLVEGPNKRAPETELFGKTDRGHRVSFTSLPVTHTSEGDGARKPVVGDFVEVKILRSS 556

Query: 460 ISTLYGELVV 469
            ++L GE + 
Sbjct: 557 TASLSGEPIA 566


>gi|195037130|ref|XP_001990018.1| GH19109 [Drosophila grimshawi]
 gi|193894214|gb|EDV93080.1| GH19109 [Drosophila grimshawi]
          Length = 647

 Score =  241 bits (616), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 153/479 (31%), Positives = 241/479 (50%), Gaps = 41/479 (8%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +R   + YGCQMN  D+  +  +    GY+R   +  AD+++L TC +R+ A +K++  L
Sbjct: 158 RRVHFEVYGCQMNTNDTEVVWSILHENGYQRCEDVASADVVMLVTCAVRDGAEQKIWHRL 217

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             +R LK  R      L + + GC+A+   E +L +   V+V+ GP +Y  LP LL  AR
Sbjct: 218 RHLRALKERRGTRRHPLQLTLLGCMAERLKERLLEQEQCVDVIAGPDSYKDLPRLLAVAR 277

Query: 145 -FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            +G   ++   S+++ +  +  V    +     TAF++I  GCD  CT+C+VP+TRG E 
Sbjct: 278 HYGNSAINVLLSLDETYADVMPVRLNSDSP---TAFVSIMRGCDNMCTYCIVPFTRGRER 334

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT----------------- 246
           SR L  +V E R L   GV E+TLLGQNVN++R +  +  + T                 
Sbjct: 335 SRPLDSIVREVRTLQQQGVKEVTLLGQNVNSYRDRSGENNQATTDGNMASGFSTVYKPKT 394

Query: 247 ----FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
               F+ LL S++E    +R+R+T+ HP+D SD +++   D   +   LHLP QSG+  +
Sbjct: 395 GGLPFAVLLQSVAEAVPEMRIRFTSPHPKDFSDEVLRVIRDYPNVCKQLHLPAQSGNTAV 454

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           L  M R +T   Y Q++  IR + P++ +SSDFI GF GET+ +F  T+ L++ + Y  A
Sbjct: 455 LARMRRGYTRDAYLQLVTHIRQMLPEVGLSSDFICGFCGETEAEFEDTVTLIESVRYNVA 514

Query: 363 FSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-K 420
           F F YS R  T      ++ V   VK  RL  + +  R      +    GQ   +LIE K
Sbjct: 515 FLFAYSMREKTTAHRRYVDDVPTAVKTARLQRMVQAFRAGATHLHKRFEGQQQLILIEGK 574

Query: 421 HGKEKGKLVGRSPWLQSVVLNS--------------KNHNIGDIIKVRITDVKISTLYG 465
             +      GR+     V++ +              +N  +GD +  RI +     L G
Sbjct: 575 SKRSDSHWFGRNDANIKVIVPAASIPTTADAGESSRRNIGVGDFVVARIVESNSQVLKG 633


>gi|257459334|ref|ZP_05624447.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Campylobacter gracilis
           RM3268]
 gi|257443263|gb|EEV18393.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Campylobacter gracilis
           RM3268]
          Length = 431

 Score =  241 bits (615), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 151/445 (33%), Positives = 234/445 (52%), Gaps = 20/445 (4%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
            F+++ GC MNV DS  +      Q YE  + ++ ADLI++NTC +REK   K++S +G 
Sbjct: 5   LFIQTLGCAMNVRDSEHIIAQLKEQDYEITDDVNIADLILINTCSVREKPVHKLFSEIGA 64

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
               +    K G      V GC A   G EI +R+P V+ V+G +   ++ + +   +F 
Sbjct: 65  FDKARKKGSKIG------VCGCTASHLGGEIFKRAPFVDFVLGARNVSKISQAVRTPKFI 118

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
              ++ D   E +F         Y       +F+ I  GCDK C++C+VP TRG EIS  
Sbjct: 119 STDINYD---ESEFAFGDFASSPYK------SFINIMIGCDKKCSYCIVPQTRGDEISIP 169

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG--EKCTFSDLLYSLSEIKGLVRLR 264
              ++ EA +    G  EI LLGQNVN + GK      EK  FSDLL  LS+I+G+ R+R
Sbjct: 170 AQIILREAERSAARGAKEIFLLGQNVNNY-GKRFSNAHEKIDFSDLLMRLSKIEGIERIR 228

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +T+ HP  M D  +    +   +   +H+P+QSGS ++L+ M R +T   Y     ++R 
Sbjct: 229 FTSPHPLHMDDKFLDVFCNNPKICKSMHMPLQSGSSKVLRDMKRGYTKQWYLDRALKLRQ 288

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             P +AIS+D IVG+P E++DDF  TM++++ + + Q FSFK+SPR  TP ++ L+ +D+
Sbjct: 289 SCPGVAISTDIIVGYPSESEDDFAETMEVLEAVRFEQVFSFKFSPRPLTPAAS-LKPLDD 347

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
            + +ERL  LQ    +       A   +I +V  E+  +E G   GRS     +      
Sbjct: 348 EISSERLSRLQNAHAKILDEIARAQKDKIFDVYFEEL-REGGTACGRSFSNFLICAQGGE 406

Query: 445 HNIGDIIKVRITDVKISTLYGELVV 469
             +G    VRI       LYG+++ 
Sbjct: 407 ELLGKTRGVRIEKTARMALYGKVIA 431


>gi|314933749|ref|ZP_07841114.1| Fe-S oxidoreductase [Staphylococcus caprae C87]
 gi|313653899|gb|EFS17656.1| Fe-S oxidoreductase [Staphylococcus caprae C87]
          Length = 448

 Score =  241 bits (614), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 143/430 (33%), Positives = 244/430 (56%), Gaps = 23/430 (5%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  +  +F    Y+RV+   +AD+ V+NTC +     +K    + R    
Sbjct: 8   TLGCKVNHYETEAIWQLFKEADYDRVDFETNADVFVINTCTVTNTGDKKSRQIIRRA--- 64

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               I++    +V V GC AQ    EI+   P V+VVVG Q  ++L + +++ +  ++ +
Sbjct: 65  ----IRQNPKAVVCVTGCYAQTSSAEIME-IPGVDVVVGTQDRHKLLDYIDQFQEERQPI 119

Query: 151 DTDYSV--EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           +   ++     +E L +    Y   R   A L IQEGC+ FCTFC++P+ RG+  SR   
Sbjct: 120 NGVGNIMKNRTYEELEV---PYFTDR-TRASLKIQEGCNNFCTFCIIPWARGLMRSRDPE 175

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
           +VV++A +L+++G  EI L G +     G G D +    + LL  L EI+GL R+R ++ 
Sbjct: 176 KVVEQASQLVNSGYKEIVLTGIHTG---GYGQDLKNYNLAQLLRDLDEIEGLERIRISSI 232

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
               ++D +I+  G+ + ++ +LH+P+QSGSD +LK M R++T   + + +  +    PD
Sbjct: 233 EASQLTDEVIEVIGNSNKVVRHLHVPLQSGSDSVLKRMRRKYTMEHFSERLTELHKALPD 292

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           +A++SD IVGFPGET+++F+ T D + K  +++   F YSPR+GTP + M +Q+DE+VK 
Sbjct: 293 LAVTSDVIVGFPGETEEEFQETYDFIVKHQFSELHVFPYSPRIGTPAARMDDQIDESVKN 352

Query: 389 ER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445
           ER   L+ L  +L ++  S       +++EV+ E+ G+E   LVG +     V       
Sbjct: 353 ERVHKLIALSDQLAKEYAS---KFENEVLEVIPEEKGEEPNTLVGYADNYMKVQFEGDES 409

Query: 446 NIGDIIKVRI 455
            IG I+KV+I
Sbjct: 410 LIGQIVKVKI 419


>gi|255083280|ref|XP_002504626.1| predicted protein [Micromonas sp. RCC299]
 gi|226519894|gb|ACO65884.1| predicted protein [Micromonas sp. RCC299]
          Length = 495

 Score =  241 bits (614), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 164/490 (33%), Positives = 247/490 (50%), Gaps = 54/490 (11%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +  +V++YGCQMNV DS  M  +   +GY+    M DAD+I++NTC IR+KA  K++  L
Sbjct: 2   KNVYVETYGCQMNVNDSEVMLSVLKDRGYDETGDMHDADVILVNTCAIRDKAEAKIWQRL 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER-A 143
              ++L+  + K     +V V GC+A+    ++L    + ++V GP  Y  LP L+E  A
Sbjct: 62  AYFKSLRRKKKKSE-KPVVGVLGCMAERLKTQLLEADQLADLVAGPDAYRDLPNLIEAVA 120

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGV-TAFLTIQEGCDKFCTFCVVPYTRGIE 202
             G++ ++   SVE+ +  +  V     RK G   AF+TI  GCD  C FC+VPYTRG E
Sbjct: 121 GTGEKAMNVQLSVEETYADIIPV-----RKEGAHAAFVTIMRGCDNACAFCIVPYTRGRE 175

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR--------------GKGLDGEKCT-- 246
            SR  + +  E R L + GV E+TLLGQNVN++               G+G+ G      
Sbjct: 176 RSRDPASIEYEVRLLSEQGVKEVTLLGQNVNSYAYQEGETDFLSMLAAGEGVVGSDAAAR 235

Query: 247 -------FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
                  F+ LL  ++ I   +R+R+T+ HP+D  D +++       +   LH+P QSGS
Sbjct: 236 RREGAVQFAALLDRVAAIDPEMRVRFTSPHPKDFPDEVLEVIARRPNVCNCLHMPAQSGS 295

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
              L+ M R +T   Y  +IDR++ + P  AI++D I GF GET++D   T+ L+  +GY
Sbjct: 296 TATLERMARGYTREAYLTLIDRVKEIIPGCAITTDIISGFCGETEEDHADTVSLMKAVGY 355

Query: 360 AQAFSFKYSPRLGTPGSNMLE-QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI 418
            QAF F YS R GT  +   E  V E+VK  RL  +    R          VG+   VL+
Sbjct: 356 EQAFMFAYSERDGTSAARHQEDDVPEDVKQRRLAEVIDAFRTTAAERQKEEVGRTHLVLV 415

Query: 419 EKHGKEKGK-LVGRSPWLQSVVLNSKNHNI---------------------GDIIKVRIT 456
           E   K+  + L G++   +  V       I                     G+ + VR+T
Sbjct: 416 EGPSKKNERELTGKTDSAKWAVFADTPVGIYGGDEDEERTGGEKGVATPRAGEYVAVRVT 475

Query: 457 DVKISTLYGE 466
                TL+GE
Sbjct: 476 GCSTGTLFGE 485


>gi|217031489|ref|ZP_03436994.1| hypothetical protein HPB128_21g47 [Helicobacter pylori B128]
 gi|216946689|gb|EEC25285.1| hypothetical protein HPB128_21g47 [Helicobacter pylori B128]
          Length = 430

 Score =  241 bits (614), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 145/428 (33%), Positives = 235/428 (54%), Gaps = 19/428 (4%)

Query: 33  GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92
           GC MN  DS  +        Y+  +    ADLI++NTC +REK   K++S +G+   +K 
Sbjct: 2   GCAMNSRDSEHLLSELSKLDYKETSDPKTADLILINTCSVREKPERKLFSEIGQFAKIKK 61

Query: 93  SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDT 152
              K G      V GC A   G +IL+++P V+ V+G +   ++ +++ R +  +  +D 
Sbjct: 62  PNAKIG------VCGCTASHMGADILKKAPSVSFVLGARNVSKISQVIHREKAVEVAIDY 115

Query: 153 DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVD 212
           D S    FE        + +K  + + L I  GCDK C +C+VP+TRG EIS  +  ++ 
Sbjct: 116 DESAY-AFE-------FFEKKAQIRSLLNISIGCDKKCAYCIVPHTRGKEISIPMDLILR 167

Query: 213 EARKLIDNGVCEITLLGQNVNAWRGK-GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPR 271
           EA KL +NG  E+ LLGQNVN +  +   +  K  FSDLL  LSEI+G+ R+R+T+ HP 
Sbjct: 168 EAEKLANNGTKELMLLGQNVNNYGARFSSEHAKVDFSDLLDKLSEIQGIERIRFTSPHPL 227

Query: 272 DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAI 331
            M+D  ++       +   +H+P+QSGS  +LK M R ++   +   ++R++++ P++ I
Sbjct: 228 HMNDRFLERFAKNPKVCKSIHMPLQSGSSAVLKMMRRGYSKEWFLNRVERLKALVPEVGI 287

Query: 332 SSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERL 391
           S+D IVGFP E+D DF  TM++++K+ +   +SF YSPR  T      E+V   V + RL
Sbjct: 288 STDIIVGFPNESDKDFEDTMEVLEKVRFDTLYSFIYSPRPFTEAGAWKERVPLEVSSSRL 347

Query: 392 LCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV---GRSPWLQSVVLNSK-NHNI 447
             LQ + +E         VG+   VL+E   +   ++V   GRS   + + +  K   N 
Sbjct: 348 ERLQNRHKEILEEKAKLEVGKTHVVLVENRREMDDQIVGFEGRSDTGKFIEVACKEKRNP 407

Query: 448 GDIIKVRI 455
           G++++V I
Sbjct: 408 GELVRVEI 415


>gi|303288614|ref|XP_003063595.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226454663|gb|EEH51968.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 548

 Score =  240 bits (613), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 154/453 (33%), Positives = 243/453 (53%), Gaps = 26/453 (5%)

Query: 8   IGVAHMVSQIVDQCIVPQR--FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLI 65
           +GVA  V++  +     +R   + ++YGCQMNV DS  M  +    GY+  + + DAD+I
Sbjct: 71  VGVAGAVAEAPETPSPRERKNVYTETYGCQMNVNDSEVMLSVLADNGYDTTDDVHDADVI 130

Query: 66  VLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVN 125
           ++NTC IR+KA  K++  L   ++L+  R K+    +V V GC+A+    ++L    + +
Sbjct: 131 LINTCAIRDKAEAKIWQRLAYFKSLRRRR-KKNEKPVVGVLGCMAERLKTQLLEADQLAD 189

Query: 126 VVVGPQTYYRLPELLERARF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGV-TAFLTIQ 183
           +V GP  Y  LP L+      G++ ++   SVE+ +  +  V     RK G   AF+TI 
Sbjct: 190 LVAGPDAYRDLPNLISAVNSSGEKAMNVQLSVEETYADIVPV-----RKEGAHAAFVTIM 244

Query: 184 EGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-----RGK 238
            GCD  C+FC+VPYTRG E SR  + +  E R L + GV E+TLLGQNVN++      G 
Sbjct: 245 RGCDNACSFCIVPYTRGRERSRDPASIEYEVRLLSEQGVKEVTLLGQNVNSYAYVAEEGA 304

Query: 239 GLDG-----EKCT----FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMP 289
           G DG      K T    F+ LL  ++ +   +R+R+T+ HP+D  D +++   +   +  
Sbjct: 305 GADGATDFLSKLTGSMQFAALLDRVASVDPEMRVRFTSPHPKDFPDEVLEVIKNRPNVCK 364

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
            LH+P QSGS   L+ M R +T   Y  +I  +    P  AI++D I GF  ET+++   
Sbjct: 365 CLHMPAQSGSTTTLERMARGYTREAYLDLIKNVHEKIPGCAITTDIITGFCAETEEEHED 424

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDA 408
           T+ L+  + Y QAF F YS R GT  +  M + VD++VK  RL  +    R      N+ 
Sbjct: 425 TVSLMKLVKYEQAFMFAYSEREGTAAARKMSDDVDDDVKQRRLAEIIDAFRSSASERNER 484

Query: 409 CVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440
            +G++   L+E   K+  + L G++   + VV 
Sbjct: 485 EIGRVHLCLVEGVSKKNDRELTGKTDTSKWVVF 517


>gi|256370749|ref|YP_003108574.1| RNA modification protein, MiaB family [Candidatus Sulcia muelleri
           SMDSEM]
 gi|256009541|gb|ACU52901.1| RNA modification protein, MiaB family [Candidatus Sulcia muelleri
           SMDSEM]
          Length = 458

 Score =  240 bits (613), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 148/462 (32%), Positives = 259/462 (56%), Gaps = 27/462 (5%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +++++++YGCQMN+ DS  +  +  ++G+ + + + +A++I++NTC IREK+  K+   +
Sbjct: 4   KKYYIENYGCQMNISDSEIVCSILDNEGFIQTDLIQNANIILINTCSIREKSENKILLRI 63

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA- 143
            +I+ LKN +     +L++ + GC+A+   ++  + + IVN+++GP +Y  LP L+++  
Sbjct: 64  NQIKYLKNYK----KNLIIGILGCMAEIFKKKFFKINKIVNLILGPDSYRELPFLIKKIL 119

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
               + ++T +S  + +  +        +K  +TAF+TI  GCD  CTFCVVP+TRG E 
Sbjct: 120 NQNGKYINTYFSNNETYSDIL----PKRKKEKITAFVTIMRGCDNMCTFCVVPFTRGREK 175

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNA--WRGKGL--DGEKCTFS----------D 249
           SR    ++ E   L   G  EI LLGQNV++  W G GL  +  K +FS           
Sbjct: 176 SRDPISILKECEFLFQKGFKEIILLGQNVDSYFWYGGGLKKNFNKFSFSLKNNTIINFPK 235

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
           LL  +++    +R+R+ TS+P  ++  ++        +  ++HLPVQSGS++IL  MNR+
Sbjct: 236 LLELVAKTVPFMRIRFWTSNPNQITFNVLNVMKKYKNICKHIHLPVQSGSNKILSLMNRK 295

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369
           ++  EY  +I++I  + P+ +IS D I GF  E++ D   T++L++ + Y  ++ F YSP
Sbjct: 296 YSREEYILLINQIYKIIPNCSISCDIITGFCNESEKDHNETLNLMNYVKYNFSYMFIYSP 355

Query: 370 R-LGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGK 427
           R L        + V   +K  RL  +    R+         +G+I E+LIE    K +  
Sbjct: 356 RKLTYAFKKFNDNVSLTIKKRRLTEIINLQRKHSYYRLKKSIGKIQEILIEGISKKSRNY 415

Query: 428 LVGRSPWLQSVVL--NSKNHNIGDIIKVRITDVKISTLYGEL 467
             GR+     V+   N KN  IG++IKV+I +   +TL GE+
Sbjct: 416 FYGRNSGNDIVIFNKNKKNSKIGNLIKVKIKNCTSATLIGEI 457


>gi|194902322|ref|XP_001980672.1| GG17285 [Drosophila erecta]
 gi|190652375|gb|EDV49630.1| GG17285 [Drosophila erecta]
          Length = 586

 Score =  240 bits (613), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 150/473 (31%), Positives = 247/473 (52%), Gaps = 42/473 (8%)

Query: 32  YGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLK 91
           YGCQMN  D+  +  +    GY R    ++AD+I+L TC +R+ A +++++ L  +R +K
Sbjct: 99  YGCQMNTNDTEVVFSILKESGYLRCQEPEEADVIMLVTCAVRDGAEQRIWNRLKHLRAMK 158

Query: 92  NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR-FGKRVV 150
           N R      L + + GC+A+   E++L +   V+V+ GP +Y  LP LL  +R +G   +
Sbjct: 159 NKRSTRRHPLQLTLLGCMAERLKEKLLEQEQCVDVIAGPDSYKDLPRLLAISRHYGNSAI 218

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
           +   S+++ +  +  V          TAF++I  GCD  CT+C+VP+TRG E SR L  +
Sbjct: 219 NVLLSLDETYADVMPVRLN---SESPTAFVSIMRGCDNMCTYCIVPFTRGRERSRPLHSI 275

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGK-------GLDGEKCT----------------- 246
           V EA+ L + GV E+TLLGQNVN++R +        L  E+ T                 
Sbjct: 276 VAEAKALAEQGVKEVTLLGQNVNSYRDRSAQEQQEALCPEEATPVPGFSTVYKPKTGGTP 335

Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306
           F+ LL ++++    +R+R+T+ HP+D SD +++   D   +   LHLP QSG+ ++L  M
Sbjct: 336 FAALLRAVAQAVPEMRVRFTSPHPKDFSDEVLEVIRDHPNVCKQLHLPAQSGNTQVLDRM 395

Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
            R ++   Y +++  IR   P++ +SSDFI GF GET+++F+ T+ L+ ++ Y  A+ F 
Sbjct: 396 RRGYSREAYLELVQHIRQFLPNVGLSSDFICGFCGETEEEFQDTVSLIQQVQYNVAYLFA 455

Query: 367 YSPRLGTPGSNML-EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKE 424
           YS R  T       + V  NVK ERL  + +  RE     +    GQ   +L+E K  + 
Sbjct: 456 YSMREKTTAHRRYKDDVPLNVKNERLQRMVQVFREGATQLHRQMEGQEQLILVEGKSKRS 515

Query: 425 KGKLVGRSPWLQSVVLNS------------KNHNIGDIIKVRITDVKISTLYG 465
                GR+     V++ +            ++   GD + VRI +     L G
Sbjct: 516 DAHWFGRNDANIKVIVPAIDVPICGDPTARRSFGAGDFLTVRIEESNSQVLKG 568


>gi|70726341|ref|YP_253255.1| hypothetical protein SH1340 [Staphylococcus haemolyticus JCSC1435]
 gi|68447065|dbj|BAE04649.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 448

 Score =  240 bits (612), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 149/444 (33%), Positives = 247/444 (55%), Gaps = 25/444 (5%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  +  +F    Y+RVN   +AD+ V+NTC +     +K    + R    
Sbjct: 8   TLGCKVNHYETEAIWQLFKDANYDRVNFETNADVFVINTCTVTNTGDKKSRQIIRRA--- 64

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               I++  D +V V GC AQ    EI+   P V+VVVG Q  ++L + +++ R  ++ +
Sbjct: 65  ----IRQNPDAVVCVTGCYAQTSSAEIME-IPGVDVVVGTQDRHKLLDYIQQFREERQPI 119

Query: 151 DTDYSV--EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           +   ++     +E L   D  Y   R   A L IQEGC+ FCTFC++P+ RG+  SR   
Sbjct: 120 NGVGNIMKNRTYEEL---DVPYFTDR-TRASLKIQEGCNNFCTFCIIPWARGLMRSRDPE 175

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
           +VV++A +L++ G  EI L G +     G G D +    + LL  L EI GL R+R ++ 
Sbjct: 176 KVVEQATQLVNAGYKEIVLTGIHTG---GYGQDLKDYNLAQLLRDLEEIDGLERIRISSI 232

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
               ++D +I      + ++ +LH+P+QSGSD +LK M R++T   + + I ++    PD
Sbjct: 233 EASQLTDEVIDVLKRSNKVVRHLHVPLQSGSDTVLKRMRRKYTMEHFSERIMKLHDALPD 292

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           +A++SD IVGFPGET+++F+ T D + K  +++   F YS R+GTP + M +Q+DE +K 
Sbjct: 293 LAVTSDVIVGFPGETEEEFQETYDFIVKHKFSELHVFPYSARIGTPAARMDDQIDETIKN 352

Query: 389 ER---LLCLQKKLREQQVS-FNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
           ER   L+ L  +L ++  S F D    +++EV+ E+ G+ +G LVG +     V     +
Sbjct: 353 ERVHKLITLSDQLAKEYASKFED----EVLEVIPEEAGEIEGTLVGYADNYMKVQFEGND 408

Query: 445 HNIGDIIKVRITDVKISTLYGELV 468
             IG I+KV+I         G++V
Sbjct: 409 SLIGQIVKVKIAKADYPINKGKVV 432


>gi|168215652|ref|ZP_02641277.1| MiaB-like tRNA modifying enzyme [Clostridium perfringens NCTC 8239]
 gi|182382416|gb|EDT79895.1| MiaB-like tRNA modifying enzyme [Clostridium perfringens NCTC 8239]
          Length = 434

 Score =  240 bits (612), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 160/445 (35%), Positives = 251/445 (56%), Gaps = 23/445 (5%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y+S  M + F  +GYE V+  + AD+ V+NTC +     +K    +GR R  
Sbjct: 7   TLGCRVNTYESEAMTEKFVREGYEVVDFNEMADVYVVNTCSVTNMGDKKSRQIIGRAR-- 64

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPI--VNVVVGPQTYYRLPELLERAR-FGK 147
                ++  + ++ V GC AQ    E+   S I  V+VV+G +    +   + +AR  GK
Sbjct: 65  -----RQNPEAIIAVVGCYAQIAPTEV---SGIEGVDVVLGSRNKGEIVYYVNKARDEGK 116

Query: 148 RVVDTDYSVEDK-FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           + V     +++K FE L I +  YN K    AFL IQ+GC++FC +C++PYTRG   S+ 
Sbjct: 117 QQVKVGAVLKNKVFEDLKIEE--YNNK--TRAFLKIQDGCNRFCAYCLIPYTRGSVCSKD 172

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
             +V+DE R L ++G  EI L G +  ++ G  LD EK T  DLL  + +I G+ R+R  
Sbjct: 173 PKKVLDEIRSLAEHGFKEIILSGIHTASY-GVDLD-EKVTLVDLLEEIEKIDGIERVRIG 230

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
           +  P   ++ +++    L  L P+ HL +QSG D  LK MNRR+TA EY  I++ +R   
Sbjct: 231 SIDPTFFTEDVVRRILALKKLCPHFHLSLQSGCDATLKRMNRRYTAKEYEDIVNLLRDKI 290

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
            D++I++D IVGFPGETD++F+ T + + +I  ++   FKYSPR GT   NM  QVD N 
Sbjct: 291 EDVSITTDVIVGFPGETDEEFKETYEFLKRIALSKTHIFKYSPRKGTRAENMENQVDGNK 350

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK-NH 445
           K ER   L +  R  + +F +  +G++I+VL E+   E G  V        + +N+K + 
Sbjct: 351 KDERSKKLIELNRINEKAFAEKYIGEVIDVLFEEE-VELGSGVYTGYTRNYIKVNAKADC 409

Query: 446 NI-GDIIKVRITDVKISTLYGELVV 469
           N+ G I+ V+I   +     GE+V+
Sbjct: 410 NVSGKILNVKINSFEGEVAKGEIVL 434


>gi|226311621|ref|YP_002771515.1| hypothetical protein BBR47_20340 [Brevibacillus brevis NBRC 100599]
 gi|226094569|dbj|BAH43011.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599]
          Length = 452

 Score =  240 bits (612), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 148/433 (34%), Positives = 242/433 (55%), Gaps = 21/433 (4%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVN-SMDDADLIVLNTCHIREKAAEKVYSFLGRIRN 89
           + GC++N Y++  +  +F + GYERV+   +DAD+ V+NTC +     +K    + R   
Sbjct: 8   TLGCKVNSYETEAIWQLFKADGYERVDFEQEDADVYVINTCTVTNTGDKKSRQVIRRA-- 65

Query: 90  LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149
                I+   + +V V GC AQ    EI +  P V++VVG Q   +L E +++ R  +  
Sbjct: 66  -----IRRNPEAIVAVTGCYAQTSPSEIAQ-IPGVDIVVGTQGREKLIEYVDQIRAERTP 119

Query: 150 VDTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
           ++   ++     FE L  V    +R R   A L IQEGC+ FCTFC++P+ RG+  SR  
Sbjct: 120 INAVGNIMKARDFEELD-VPNFTDRTR---ASLKIQEGCNNFCTFCIIPWARGLMRSRKP 175

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
             VV++A+KL++ G  EI L G +     G G D E    + LL  L +++GL R+R ++
Sbjct: 176 ESVVEQAQKLVEAGYLEIVLTGIHTG---GYGEDLEDYNLAKLLIDLHQVEGLKRIRISS 232

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
                ++D +I+   + D ++ +LH+P+Q+G D +LK M R++T  E+ + + ++R   P
Sbjct: 233 IEASQITDEVIEVINNSDRVVRHLHVPLQAGDDEVLKRMRRKYTTAEFYERMVKVREALP 292

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
             AI++D IVGFPGET++ F    + + KIG+A+   F YS R GTP + M +Q+ E  K
Sbjct: 293 GAAITTDVIVGFPGETEEQFWNGYEFMKKIGFAEMHVFPYSMRTGTPAARMTDQIPEEEK 352

Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE---KGKLVGRSPWLQSVVLNSKN 444
            ER+  L +  +E  ++++   VG ++EV+ E+  KE    G L+G S    +VV     
Sbjct: 353 NERVAKLLELNQELTLAYSKKFVGDVLEVIPERPFKEAPDSGLLMGYSDNYLNVVFPGDE 412

Query: 445 HNIGDIIKVRITD 457
             IG I KVR+ +
Sbjct: 413 SMIGKICKVRLDE 425


>gi|225175074|ref|ZP_03729070.1| RNA modification enzyme, MiaB family [Dethiobacter alkaliphilus AHT
           1]
 gi|225169250|gb|EEG78048.1| RNA modification enzyme, MiaB family [Dethiobacter alkaliphilus AHT
           1]
          Length = 431

 Score =  240 bits (612), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 144/425 (33%), Positives = 237/425 (55%), Gaps = 15/425 (3%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N  ++  ++++F   GYE V   + AD+ V+NTC +   +  K    + R R  
Sbjct: 8   TLGCKVNQTETAALQNLFGEAGYETVPFEETADVYVINTCTVTHLSDRKSRQMIRRAR-- 65

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
                +   D ++VV GC AQ   ++I+   P V++V+G  + +RLPEL++ A+ G+   
Sbjct: 66  -----RTNPDAVIVVTGCYAQVSADDIME-IPEVDLVIGTHSRHRLPELVQEAKKGRLNC 119

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
              +  +  FE +     G  R R   AFL +QEGC +FC++C+VPY RG   SR     
Sbjct: 120 VAPWEEKQGFEAMPASQSG-ERTR---AFLKVQEGCRQFCSYCIVPYARGPLHSRPPEDA 175

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270
             EA +L + G  E+ L G ++ ++ G+ L GE    SDL+  L  I+ + R+R ++  P
Sbjct: 176 AAEAERLAEQGFSEMVLSGVHLGSY-GEDLPGE-LALSDLIRELVTIEKIRRIRISSIEP 233

Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330
            +++  LI+   D   +  +LH+P+QSG D +L+ MNR++ + E+ Q+I  +R+  P++A
Sbjct: 234 TEITPDLIEVLLDYPKVCRHLHIPLQSGDDHVLRRMNRKYDSAEFLQLIRWLRAQIPEMA 293

Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER 390
           I++D +VGFPGETD  F  T+++V K G+++   FKYSPR GTP +   EQ+   VK ER
Sbjct: 294 ITTDVMVGFPGETDSQFERTLEVVRKCGFSRIHVFKYSPRSGTPAAKFDEQISPQVKEER 353

Query: 391 LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDI 450
              L     E   +F    +G+ +EVL E+   E G++ G +     V   +    +G I
Sbjct: 354 SRRLIDLGEELAGTFRRRFIGETVEVLFEESAGE-GQITGLTEHYVRVTAEAPQAMLGQI 412

Query: 451 IKVRI 455
           +KV I
Sbjct: 413 VKVDI 417


>gi|147669834|ref|YP_001214652.1| RNA modification protein [Dehalococcoides sp. BAV1]
 gi|229890510|sp|A5FPV2|MIAB_DEHSB RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|146270782|gb|ABQ17774.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Dehalococcoides sp. BAV1]
          Length = 418

 Score =  240 bits (612), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 154/445 (34%), Positives = 241/445 (54%), Gaps = 38/445 (8%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           +++ + GCQMN  +S R+  +F   GY   +  +DA+L+++N+C +RE A  KV + L  
Sbjct: 4   YYLWTIGCQMNQAESDRLGRLFELWGYSLADKAEDAELVLVNSCVVREHAENKVVNRLHL 63

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           +R+LKN    E   L + + GC+   +   I ++ P V+ + GP +   +P+  E     
Sbjct: 64  LRSLKN----ENPKLKIALTGCLVGQDISLIKKKFPFVDYIFGPGS---MPDWRE----- 111

Query: 147 KRVVDTDYSVEDKFERLSIVDGGY--NRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
                              +  G+    +  V+A +TI +GC+ FCT+CVVPY RG E S
Sbjct: 112 -------------------IPEGFILPLRPPVSANVTIMQGCNNFCTYCVVPYRRGREKS 152

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           RS++++  E  +L+  G  E+ LLGQNV+++ G  L  + C  +DLL +L +I GL+R+R
Sbjct: 153 RSIAEIGCEVAELVRRGSREVVLLGQNVDSY-GHDLPEKPC-LADLLSALHDITGLLRIR 210

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           + TSHP+D+S  LI A   L  +   L LPVQSG D IL SM R +T  +YR++++RI++
Sbjct: 211 FLTSHPKDISQKLIDAMAHLPKVCRSLSLPVQSGDDTILASMRRGYTNQQYRELVERIKT 270

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT-PGSNMLEQVD 383
             PDI++ +D IVGFP E ++ F  +  L+  IGY       YSPR  T    +M + V 
Sbjct: 271 AMPDISLQTDLIVGFPSENEEQFNQSYKLMADIGYDAIHVAAYSPRPQTVAAHDMADDVP 330

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
              K  RL  ++   +E     N A +    EVL+E  G +K K  GR+   + V L S 
Sbjct: 331 VIEKKRRLKLIEDLQKETVGKANAALMDTFAEVLVE--GLQKNKWQGRTLGGKLVFLESD 388

Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468
               G ++KV+I      +L  +LV
Sbjct: 389 LPLEGCLVKVKIFKTSPWSLQAKLV 413


>gi|110803412|ref|YP_699306.1| MiaB-like tRNA modifying enzyme [Clostridium perfringens SM101]
 gi|110683913|gb|ABG87283.1| MiaB-like tRNA modifying enzyme [Clostridium perfringens SM101]
          Length = 434

 Score =  239 bits (611), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 160/445 (35%), Positives = 251/445 (56%), Gaps = 23/445 (5%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y+S  M + F  +GYE V+  + AD+ V+NTC +     +K    +GR R  
Sbjct: 7   TLGCRVNTYESEAMTEKFVREGYEVVDFNEMADVYVVNTCSVTNMGDKKSRQIIGRAR-- 64

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPI--VNVVVGPQTYYRLPELLERAR-FGK 147
                ++  + ++ V GC AQ    E+   S I  V+VV+G +    +   + +AR  GK
Sbjct: 65  -----RQNPEAIIAVVGCYAQIAPTEV---SGIEGVDVVLGSRNKGEIVYYVNKARDEGK 116

Query: 148 RVVDTDYSVEDK-FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           + V     +++K FE L I +  YN K    AFL IQ+GC++FC +C++PYTRG   S+ 
Sbjct: 117 QQVKVGAVLKNKVFEDLKIEE--YNNK--TRAFLKIQDGCNRFCAYCLIPYTRGSVCSKD 172

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
             +V+DE R L ++G  EI L G +  ++ G  LD EK T  DLL  + +I G+ R+R  
Sbjct: 173 PKKVLDEIRSLAEHGFKEIILSGIHTASY-GVDLD-EKVTLVDLLEEIEKIDGIERVRIG 230

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
           +  P   ++ +++    L  L P+ HL +QSG D  LK MNRR+TA EY  I++ +R   
Sbjct: 231 SIDPTFFTEDVVRRILALKKLCPHFHLSLQSGCDATLKRMNRRYTAKEYEDIVNLLRDKI 290

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
            D++I++D IVGFPGETD++F+ T + + +I  ++   FKYSPR GT   NM  QVD N 
Sbjct: 291 EDVSITTDVIVGFPGETDEEFKETYEFLKRIALSKTHIFKYSPRKGTRAENMENQVDGNK 350

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK-NH 445
           K ER   L +  R  + +F +  +G++I+VL E+   E G  V        + +N+K + 
Sbjct: 351 KDERSKKLIELNRINEKAFAEKYIGEVIDVLFEEE-VELGSGVYTGYTRNYIKVNAKADC 409

Query: 446 NI-GDIIKVRITDVKISTLYGELVV 469
           N+ G I+ V+I   +     GE+V+
Sbjct: 410 NVSGKILNVKINSFEGEVAEGEIVL 434


>gi|224537220|ref|ZP_03677759.1| hypothetical protein BACCELL_02097 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224521143|gb|EEF90248.1| hypothetical protein BACCELL_02097 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 337

 Score =  239 bits (611), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 134/343 (39%), Positives = 204/343 (59%), Gaps = 15/343 (4%)

Query: 133 YYRLPELLERARFGKRVVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDKFC 190
           Y  LP+L+     G++ ++ + S  + +  +  S + G +     ++ F++I  GC+ FC
Sbjct: 2   YLTLPDLVAAVEAGEKAINVELSTTETYRDVIPSRICGNH-----ISGFVSIMRGCNNFC 56

Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDL 250
           T+C+VPYTRG E SR +  +++E   L+  G  E+TLLGQNVN++R +  +GE  TF  L
Sbjct: 57  TYCIVPYTRGRERSRDVESILNEVSDLVAKGYKEVTLLGQNVNSYRFEKPNGEVVTFPML 116

Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
           L +++E    VR+R+TTSHP+DMSD  ++    +  +  ++HLPVQSGS RILK MNR++
Sbjct: 117 LRTVAEAAPGVRVRFTTSHPKDMSDETLEVIAQVPNVCKHIHLPVQSGSSRILKLMNRKY 176

Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370
           T   Y   +D I  + PD  +S+D   GF  ET++D + ++ L++K  Y  AF FKYS R
Sbjct: 177 TREWYLDRVDAIHRIVPDCGLSTDIFSGFHSETEEDHQLSLSLMEKCAYDSAFMFKYSER 236

Query: 371 LGTPGSNML-EQVDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EK 425
            GT  S  L + V E VK  RL   + LQ +L  +    N  C+G+  EVL+E   K  +
Sbjct: 237 PGTYASKHLPDDVPEEVKIRRLNEIIALQNRLSAES---NARCIGKTYEVLVEGVSKRSR 293

Query: 426 GKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            +LVGR+   + VV +   H IGD + V+IT+   +TL GE V
Sbjct: 294 EQLVGRTEQNRVVVFDRGTHRIGDFVMVKITEASSATLKGEEV 336


>gi|251810993|ref|ZP_04825466.1| 2-methylthioadenine synthase [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|293366463|ref|ZP_06613140.1| Fe-S oxidoreductase [Staphylococcus epidermidis M23864:W2(grey)]
 gi|251805503|gb|EES58160.1| 2-methylthioadenine synthase [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|291319232|gb|EFE59601.1| Fe-S oxidoreductase [Staphylococcus epidermidis M23864:W2(grey)]
          Length = 451

 Score =  239 bits (611), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 142/431 (32%), Positives = 243/431 (56%), Gaps = 25/431 (5%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  +  +F    YERV    +AD+ V+NTC +     +K    + R    
Sbjct: 11  TLGCKVNHYETEAIWQLFKDANYERVEFETNADVFVINTCTVTNTGDKKSRQIIRRA--- 67

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               I++  D +V V GC AQ    EI+   P V++VVG Q  ++L + +++ +  ++ +
Sbjct: 68  ----IRQNPDAVVCVTGCYAQTSSAEIME-IPGVDIVVGTQDRHKLLDYIQQFQDERQPI 122

Query: 151 DTDYSV--EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           +   ++     +E L +    Y   R   A L IQEGC+ FCTFC++P+ RG+  SR   
Sbjct: 123 NGVGNIMKNRTYEELEV---PYFTDR-TRASLKIQEGCNNFCTFCIIPWARGLMRSRDPE 178

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
           +VV++A +L+++G  EI L G +     G G D +    + LL  L  I+GL R+R ++ 
Sbjct: 179 KVVEQATQLVNSGYKEIVLTGIHTG---GYGQDLKNYNLAQLLRDLDTIEGLERIRISSI 235

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
               ++D +I   G+ + ++ +LH+P+QSGSD +LK M R++T   + + + ++    PD
Sbjct: 236 EASQLTDEVIDVIGNSNKVVRHLHIPLQSGSDDVLKRMRRKYTMAHFSERLTKLHQALPD 295

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE---N 385
           +A++SD IVGFPGE++D+F+ T D +    +++   F YSPR+GTP + M  Q+DE   N
Sbjct: 296 LAVTSDVIVGFPGESEDEFQETYDFIVNHHFSELHVFPYSPRIGTPAARMDNQIDEETKN 355

Query: 386 VKAERLLCLQKKLREQQVS-FNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
           V+  +L+ L  +L ++  S F D    +++EV+ E+ G+E   LVG +     V     +
Sbjct: 356 VRVHKLISLSNQLAKEYASKFED----EVLEVIPEEMGEEPHTLVGYADNYMKVRFEGDD 411

Query: 445 HNIGDIIKVRI 455
             IG I+KV+I
Sbjct: 412 SLIGQIVKVKI 422


>gi|168204736|ref|ZP_02630741.1| MiaB-like tRNA modifying enzyme [Clostridium perfringens E str.
           JGS1987]
 gi|170663578|gb|EDT16261.1| MiaB-like tRNA modifying enzyme [Clostridium perfringens E str.
           JGS1987]
          Length = 434

 Score =  239 bits (611), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 160/442 (36%), Positives = 249/442 (56%), Gaps = 26/442 (5%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y+S  M + F  +GYE V+  + AD+ V+NTC +     +K    +GR R  
Sbjct: 7   TLGCRVNTYESEAMTEKFVREGYEVVDFNEMADVYVVNTCSVTNMGDKKSRQIIGRAR-- 64

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPI--VNVVVGPQTYYRLPELLERAR-FGK 147
                ++  + ++ V GC AQ    E+   S I  V+VV+G +    +   + +AR  GK
Sbjct: 65  -----RQNPEAIIAVVGCYAQIAPTEV---SGIEGVDVVLGSRNKGEIVYYVNKARDEGK 116

Query: 148 RVVDTDYSVEDK-FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           + V     +++K FE L I +  YN K    AFL IQ+GC++FC +C++PYTRG   S+ 
Sbjct: 117 QQVKVGAVLKNKVFEDLKIEE--YNNK--TRAFLKIQDGCNRFCAYCLIPYTRGSVCSKD 172

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
             +V++E R L D+G  EI L G +  ++ G  LD EK T  DLL  + +I G+ R+R  
Sbjct: 173 PKKVLEEIRSLADHGFKEIILSGIHTASY-GVDLD-EKVTLVDLLEEIEKIDGIERVRIG 230

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
           +  P   ++ +++    L  L P+ HL +QSG D  LK MNRR+TA EY  I++ +R   
Sbjct: 231 SIDPTFFTEDVVRRILALKKLCPHFHLSLQSGCDATLKRMNRRYTAKEYEDIVNLLRDKI 290

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
            D++I++D IVGFPGETD++F  T + + +I  ++   FKYSPR GT   NM  QVD N 
Sbjct: 291 EDVSITTDVIVGFPGETDEEFEETYEFLKRIALSKTHIFKYSPRKGTRAENMENQVDGNK 350

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK-NH 445
           K ER   L +  R  + +F +  +G++I+VL E+   E G  V        + +N+K + 
Sbjct: 351 KDERSKKLIELNRINEKAFAEKYIGEVIDVLFEEE-VELGSGVYTGYTRNYIKVNAKADC 409

Query: 446 NIGDIIKVRITDVKISTLYGEL 467
           N+      +I DVKI++  GE+
Sbjct: 410 NVSG----KILDVKINSFEGEV 427


>gi|317010550|gb|ADU84297.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Helicobacter
           pylori SouthAfrica7]
          Length = 438

 Score =  239 bits (611), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 144/435 (33%), Positives = 237/435 (54%), Gaps = 19/435 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + ++++ GC MN  DS  +        Y   N    ADLI++NTC +REK   K++S +G
Sbjct: 2   KVYIETMGCAMNSRDSEHLLSELSKLDYRETNDPKIADLILINTCSVREKPERKLFSEIG 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           +   +K    K G      V GC A   G +IL+++P V+ V+G +   ++ +++ + + 
Sbjct: 62  QFAKIKKPNAKIG------VCGCTASHMGADILKKAPSVSFVLGARNVSKISQVIHKEKA 115

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            +  +D D S    FE        + +K  V + L I  GCDK C +C+VP+TRG EIS 
Sbjct: 116 VEVAIDYDESAY-AFE-------FFEKKAEVRSLLNISIGCDKKCAYCIVPHTRGKEISI 167

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE-KCTFSDLLYSLSEIKGLVRLR 264
            +  ++ EA KL  NG  E+ LLGQNVN +  +   G  K  FSDLL  LSEI G+ R+R
Sbjct: 168 PMDLILKEAEKLAHNGTKELMLLGQNVNNYGVRFSSGHAKVNFSDLLDKLSEIPGIERIR 227

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +T+ HP  M+D  ++       +   +H+P+QSGS  +LK M R ++   +   ++++++
Sbjct: 228 FTSPHPLHMNDEFLERFAKNPKVCKSIHMPLQSGSSAVLKMMRRGYSKEWFLNRVEKLKA 287

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           + P++ IS+D IVGFP E+D DF  TM++++ + +   +SF YSPR  T      E+V  
Sbjct: 288 LVPEVGISTDIIVGFPNESDKDFEDTMEVLETVRFDTLYSFIYSPRPFTEAGAWKERVPL 347

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV---GRSPWLQSVVLN 441
            V + RL  LQ + +E         +G+   VL+E   +   ++V   GRS   + + + 
Sbjct: 348 EVSSLRLERLQNRHKEILEEKAKLEMGKTHVVLVENTREMDNQIVGFEGRSDTGKFIEVT 407

Query: 442 SK-NHNIGDIIKVRI 455
            K   N+G++++V I
Sbjct: 408 CKEKRNLGELVEVEI 422


>gi|73749069|ref|YP_308308.1| (dimethylallyl)adenosine tRNA methylthiotransferase
           [Dehalococcoides sp. CBDB1]
 gi|123619987|sp|Q3ZYS0|MIAB_DEHSC RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|73660785|emb|CAI83392.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Dehalococcoides sp.
           CBDB1]
          Length = 418

 Score =  239 bits (611), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 154/445 (34%), Positives = 242/445 (54%), Gaps = 38/445 (8%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           +++ + GCQMN  +S R+  +F   GY   +  +DA+L+++N+C +RE A  KV + L  
Sbjct: 4   YYLWTIGCQMNQAESDRLGRLFELWGYSLADKAEDAELVLVNSCVVREHAENKVVNRLHL 63

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           +R+LKN   K    L + + GC+   +   I ++ P V+ + GP +   +P+  E     
Sbjct: 64  LRSLKNKNPK----LKIALTGCLVGQDISLIKKKFPFVDYIFGPGS---MPDWRE----- 111

Query: 147 KRVVDTDYSVEDKFERLSIVDGGY--NRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
                              +  G+    +  V+A +TI +GC+ FCT+CVVPY RG E S
Sbjct: 112 -------------------IPEGFILPLRPPVSANVTIMQGCNNFCTYCVVPYRRGREKS 152

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           RS++++  E  +L+  G  E+ LLGQNV+++ G  L  + C  +DLL +L +I GL+R+R
Sbjct: 153 RSIAEIGCEVAELVRRGSREVVLLGQNVDSY-GHDLPEKPC-LADLLSALHDITGLLRIR 210

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           + TSHP+D+S  LI A   L  +   L LPVQSG D IL SM R +T  +YR++++RI++
Sbjct: 211 FLTSHPKDISQKLIDAMAHLPKVCRSLSLPVQSGDDTILASMRRGYTNQQYRELVERIKT 270

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQVD 383
             PDI++ +D IVGFP E ++ F  +  L+  IGY       YSPR  T  + +M + V 
Sbjct: 271 AMPDISLQTDLIVGFPSENEEQFNQSYKLMADIGYDAIHVAAYSPRPQTVAARDMADDVP 330

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
              K  RL  ++   +E     N A +    EVL+E  G +K K  GR+   + V L S 
Sbjct: 331 VIEKKRRLKLIEDLQKETVGKANAALMDTFAEVLVE--GLQKNKWQGRTLGGKLVFLESD 388

Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468
               G ++KV+I      +L  +LV
Sbjct: 389 LPLEGCLVKVKIFKTSPWSLQAKLV 413


>gi|310643065|ref|YP_003947823.1| tRNA-i(6)a37 thiotransferase enzyme miab [Paenibacillus polymyxa
           SC2]
 gi|309248015|gb|ADO57582.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Paenibacillus polymyxa
           SC2]
          Length = 447

 Score =  239 bits (610), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 141/444 (31%), Positives = 247/444 (55%), Gaps = 21/444 (4%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVN-SMDDADLIVLNTCHIREKAAEKVYSFLGRIRN 89
           + GC++N YD+  +  +F  +GYE+V+     AD+ ++NTC +     +K          
Sbjct: 8   TLGCKVNFYDTEAIWQLFKKEGYEQVDFDEQTADVYLINTCTVTNTGDKKSRQ------- 60

Query: 90  LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149
           +    I+   D +V V GC AQ    EI+   P V++V+G Q   ++   ++  +  ++ 
Sbjct: 61  IIRRAIRRNPDAIVAVTGCYAQTSPAEIMD-IPGVDLVIGTQDRDKIIPFVKEIQESRQP 119

Query: 150 VDTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
           V+   ++     FE + + D  ++ +    AFL IQ+GC+ FCTFC++P++RG+  SR  
Sbjct: 120 VNAVRNIMKTRVFEEMDVPDFAHHTR----AFLKIQDGCNNFCTFCIIPWSRGLSRSRDA 175

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
           + ++ +AR+L+  G  EI L G +     G G D +    SDLL+ L +++GL R+R ++
Sbjct: 176 ASIITQARQLVHAGYKEIVLTGIHTG---GYGDDMDNYDLSDLLWDLEKVEGLERIRISS 232

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
                + + ++      + L+ + H+P+Q+G D +LK M R++T  E+   +  IR   P
Sbjct: 233 IEASQIDEKMLDVLKRSNKLVRHFHIPLQAGDDTVLKRMRRKYTTEEFYNKMLMIRKAMP 292

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
           D+AI++D IVGFPGETD+ FR   +L+ KIG+++   F YS R GTP + M +QVDE+VK
Sbjct: 293 DVAITTDIIVGFPGETDEMFRNGYELMKKIGFSEMHVFPYSKRTGTPAARMEDQVDEDVK 352

Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIE---KHGKEKGKLVGRSPWLQSVVLNSKN 444
             R+  L +   + Q+++ +  VGQ++EV+ E   K  ++ G L G S     +V     
Sbjct: 353 NARVRELIELSEQMQLAYAEKFVGQVLEVIPEVAPKGTEDSGILYGYSDNYIQLVFEGNK 412

Query: 445 HNIGDIIKVRITDVKISTLYGELV 468
             +G + +V++T   ++   G+LV
Sbjct: 413 DLVGKVCRVKLTKAGVNESEGQLV 436


>gi|145521116|ref|XP_001446413.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124413891|emb|CAK79016.1| unnamed protein product [Paramecium tetraurelia]
          Length = 504

 Score =  239 bits (610), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 151/468 (32%), Positives = 251/468 (53%), Gaps = 48/468 (10%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +FF+++YGCQMN  DS  ++ +  S+GY   N + +AD+I LNTC IR  A +KV+  + 
Sbjct: 46  KFFIETYGCQMNANDSQIVQSILSSEGYSNTNDISEADIIFLNTCSIRANAEKKVFQRM- 104

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                  S +K    +L ++ GC+A+   E++  +    N++VGP +Y  LP LL   + 
Sbjct: 105 -------SELKSQNKVLGIL-GCMAERLKEQLFVQG--ANIIVGPDSYKSLPTLLNSFQL 154

Query: 146 GK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            + + +DT+ S+ + ++ +  +    N    +T +++I  GC+  C+FCVVP+TRG E S
Sbjct: 155 TRDKQIDTNLSLTETYDDILPI----NPTDSITTYVSIMRGCNNMCSFCVVPFTRGRERS 210

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAW-----RGKGLDGEKCTFSDLLYSLSEIKG 259
           R+   +++E + L   G+ E+TLLGQNVN++     +          F++L Y L    G
Sbjct: 211 RNPESILEEIQILTQKGIKEVTLLGQNVNSYFFQDEKISSQHENTVGFTEL-YKLRSGNG 269

Query: 260 L---------------VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304
           L                R+R+T+ HP++    +++       +   +H+P+QSGSD ILK
Sbjct: 270 LRFDQLLDEIAVKFPKTRIRFTSPHPKNFPKKVLEVIAKHPNICKNIHIPIQSGSDEILK 329

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
            M R +T      + +  R++ P++ +S+D IVGF  ET+ DF  T+ L+  + +  AF 
Sbjct: 330 KMRRNYTRGAIVDLCNEARTLIPNVTLSTDVIVGFCDETEYDFEQTLSLLQLVQFENAFM 389

Query: 365 FKYSPRLGTPG-SNMLEQVDENVKAERLLCLQKKLREQQVSF----NDACVGQIIEVLIE 419
           F YS R  T    N+ + V E+VK+ RL    +KL EQQ       N   +G+   VL+E
Sbjct: 390 FAYSMREKTHAYRNLQDNVPESVKSSRL----EKLIEQQHKIMNYKNSLEIGKKHIVLVE 445

Query: 420 KHGKEKGKLVGRSPWLQSVVLNSKN--HNIGDIIKVRITDVKISTLYG 465
           + G +  +L GR+   + VV  + N  + IGD ++V I    + TL G
Sbjct: 446 QLGNKPNQLKGRTDSNKGVVFQNDNNIYAIGDFVEVEILGSGLKTLSG 493


>gi|27468181|ref|NP_764818.1| hypothetical protein SE1263 [Staphylococcus epidermidis ATCC 12228]
 gi|57867026|ref|YP_188720.1| hypothetical protein SERP1144 [Staphylococcus epidermidis RP62A]
 gi|282875998|ref|ZP_06284865.1| MiaB-like protein [Staphylococcus epidermidis SK135]
 gi|27315727|gb|AAO04862.1|AE016748_96 conserved hypothetical protein [Staphylococcus epidermidis ATCC
           12228]
 gi|57637684|gb|AAW54472.1| conserved hypothetical protein [Staphylococcus epidermidis RP62A]
 gi|281295023|gb|EFA87550.1| MiaB-like protein [Staphylococcus epidermidis SK135]
 gi|329735363|gb|EGG71655.1| tRNA methylthiotransferase YqeV [Staphylococcus epidermidis VCU045]
 gi|329737126|gb|EGG73380.1| tRNA methylthiotransferase YqeV [Staphylococcus epidermidis VCU028]
          Length = 448

 Score =  239 bits (610), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 142/431 (32%), Positives = 243/431 (56%), Gaps = 25/431 (5%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  +  +F    YERV    +AD+ V+NTC +     +K    + R    
Sbjct: 8   TLGCKVNHYETEAIWQLFKDANYERVEFETNADVFVINTCTVTNTGDKKSRQIIRRA--- 64

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               I++  D +V V GC AQ    EI+   P V++VVG Q  ++L + +++ +  ++ +
Sbjct: 65  ----IRQNPDAVVCVTGCYAQTSSAEIME-IPGVDIVVGTQDRHKLLDYIQQFQDERQPI 119

Query: 151 DTDYSV--EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           +   ++     +E L +    Y   R   A L IQEGC+ FCTFC++P+ RG+  SR   
Sbjct: 120 NGVGNIMKNRTYEELEV---PYFTDR-TRASLKIQEGCNNFCTFCIIPWARGLMRSRDPE 175

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
           +VV++A +L+++G  EI L G +     G G D +    + LL  L  I+GL R+R ++ 
Sbjct: 176 KVVEQATQLVNSGYKEIVLTGIHTG---GYGQDLKNYNLAQLLRDLDTIEGLERIRISSI 232

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
               ++D +I   G+ + ++ +LH+P+QSGSD +LK M R++T   + + + ++    PD
Sbjct: 233 EASQLTDEVIDVIGNSNKVVRHLHIPLQSGSDDVLKRMRRKYTMAHFSERLTKLHQALPD 292

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE---N 385
           +A++SD IVGFPGE++D+F+ T D +    +++   F YSPR+GTP + M  Q+DE   N
Sbjct: 293 LAVTSDVIVGFPGESEDEFQETYDFIVNHHFSELHVFPYSPRIGTPAARMDNQIDEETKN 352

Query: 386 VKAERLLCLQKKLREQQVS-FNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
           V+  +L+ L  +L ++  S F D    +++EV+ E+ G+E   LVG +     V     +
Sbjct: 353 VRVHKLISLSNQLAKEYASKFED----EVLEVIPEEMGEEPHTLVGYADNYMKVRFEGDD 408

Query: 445 HNIGDIIKVRI 455
             IG I+KV+I
Sbjct: 409 SLIGQIVKVKI 419


>gi|242373881|ref|ZP_04819455.1| 2-methylthioadenine synthase [Staphylococcus epidermidis M23864:W1]
 gi|242348435|gb|EES40037.1| 2-methylthioadenine synthase [Staphylococcus epidermidis M23864:W1]
          Length = 451

 Score =  239 bits (610), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 141/430 (32%), Positives = 243/430 (56%), Gaps = 23/430 (5%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  +  +F    Y+RV+   +AD+ V+NTC +     +K    + R    
Sbjct: 11  TLGCKVNHYETEAIWQLFKEADYDRVDFETNADVFVINTCTVTNTGDKKSRQIIRRA--- 67

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               I++  + +V V GC AQ    EI+   P V+VVVG Q  ++L + +++ +  ++ +
Sbjct: 68  ----IRQNPEAVVCVTGCYAQTSSAEIME-IPGVDVVVGTQDRHKLLDYIDQFQQERQPI 122

Query: 151 DTDYSV--EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           +   ++     +E L +    Y   R   A L IQEGC+ FCTFC++P+ RG+  SR   
Sbjct: 123 NGVGNIMKNRTYEELEV---PYFTDR-TRASLKIQEGCNNFCTFCIIPWARGLMRSRDPE 178

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
           +VV++A +L+++G  EI L G +     G G D +    + LL  L EI GL R+R ++ 
Sbjct: 179 KVVEQASQLVNSGYKEIVLTGIHTG---GYGQDLKNYNLAQLLRDLDEIDGLERIRISSI 235

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
               ++D +I+  G+ + ++ +LH+P+QSGSD +LK M R++T   + + +  +    PD
Sbjct: 236 EASQLTDEVIEVIGNSNKVVRHLHVPLQSGSDSVLKRMRRKYTMEHFSERLTELHKALPD 295

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           +A++SD IVGFPGET+++F+ T D + K  +++   F YSPR+GTP + M +Q+DE +K 
Sbjct: 296 LAVTSDVIVGFPGETEEEFQETYDFIVKHQFSELHVFPYSPRIGTPAARMDDQIDEGIKN 355

Query: 389 ER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445
           ER   L+ L  +L ++  S       +++EV+ E+ G++   LVG +     V       
Sbjct: 356 ERVHKLITLSNQLAKEYAS---KFENEVLEVIPEEQGEKPNTLVGYADNYMKVQFEGDES 412

Query: 446 NIGDIIKVRI 455
            IG I+KV+I
Sbjct: 413 LIGQIVKVKI 422


>gi|18311007|ref|NP_562941.1| MiaB-like tRNA modifying protein [Clostridium perfringens str. 13]
 gi|168208727|ref|ZP_02634352.1| MiaB-like tRNA modifying enzyme [Clostridium perfringens B str.
           ATCC 3626]
 gi|168212938|ref|ZP_02638563.1| MiaB-like tRNA modifying enzyme [Clostridium perfringens CPE str.
           F4969]
 gi|18145689|dbj|BAB81731.1| conserved hypothetical protein [Clostridium perfringens str. 13]
 gi|170713061|gb|EDT25243.1| MiaB-like tRNA modifying enzyme [Clostridium perfringens B str.
           ATCC 3626]
 gi|170715635|gb|EDT27817.1| MiaB-like tRNA modifying enzyme [Clostridium perfringens CPE str.
           F4969]
          Length = 434

 Score =  239 bits (609), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 160/445 (35%), Positives = 250/445 (56%), Gaps = 23/445 (5%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y+S  M + F  +GYE V+  + AD+ V+NTC +     +K    +GR R  
Sbjct: 7   TLGCRVNTYESEAMTEKFVREGYEVVDFNEMADVYVVNTCSVTNMGDKKSRQIIGRAR-- 64

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPI--VNVVVGPQTYYRLPELLERAR-FGK 147
                ++  + ++ V GC AQ    E+   S I  V+VV+G +    +   + +AR  GK
Sbjct: 65  -----RQNPEAIIAVVGCYAQIAPTEV---SGIEGVDVVLGSRNKGEIVYYVNKARDEGK 116

Query: 148 RVVDTDYSVEDK-FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           + V     +++K FE L I +  YN K    AFL IQ+GC++FC +C++PYTRG   S+ 
Sbjct: 117 QQVKVGAVLKNKVFEDLKIEE--YNNK--TRAFLKIQDGCNRFCAYCLIPYTRGSVCSKD 172

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
             +V+DE R L ++G  EI L G +  ++ G  LD EK T  DLL  + +I G+ R+R  
Sbjct: 173 PKKVLDEIRSLAEHGFKEIILSGIHTASY-GVDLD-EKVTLVDLLEEIEKIDGIERVRIG 230

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
           +  P   ++ +++    L  L P+ HL +QSG D  LK MNRR+TA EY  I++ +R   
Sbjct: 231 SIDPTFFTEDVVRRILALKKLCPHFHLSLQSGCDATLKRMNRRYTAKEYEDIVNLLRDKI 290

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
            D++I++D IVGFPGETD++F  T + + +I  ++   FKYSPR GT   NM  QVD N 
Sbjct: 291 EDVSITTDVIVGFPGETDEEFEETYEFLKRIALSKTHIFKYSPRKGTRAENMENQVDGNK 350

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK-NH 445
           K ER   L +  R  + +F +  +G++I+VL E+   E G  V        + +N+K + 
Sbjct: 351 KDERSKKLIELNRINEKAFAEKYIGEVIDVLFEEE-VELGSGVYTGYTRNYIKVNAKADC 409

Query: 446 NI-GDIIKVRITDVKISTLYGELVV 469
           N+ G I+ V+I   +     GE+V+
Sbjct: 410 NVSGKILNVKINSFEGEVAEGEIVL 434


>gi|159897576|ref|YP_001543823.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|229890607|sp|A9AZY8|MIAB_HERA2 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|159890615|gb|ABX03695.1| RNA modification enzyme, MiaB family [Herpetosiphon aurantiacus
           ATCC 23779]
          Length = 438

 Score =  239 bits (609), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 153/450 (34%), Positives = 244/450 (54%), Gaps = 29/450 (6%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
            R+FV + GCQMNV DS R+E      GY      +DAD IVLN+C +R  A EK+   +
Sbjct: 4   NRYFVWTVGCQMNVSDSERLESALQGVGYTPAEQAEDADFIVLNSCSVRANAEEKI---I 60

Query: 85  GRIRNLKNSRIK-EGGDLLVVVAGCVAQAEGEEILRRS-PIVNVVVGPQTYYRLPELLER 142
           G+I +++  RIK E  D  +V+ GC+     + I ++  P+V+  V P     + E+L  
Sbjct: 61  GKITDIQ--RIKRERPDTKIVLWGCMVGPNNQSIFKKKLPMVDHFVSPSA---VDEVLAL 115

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           A       +  Y +++    L + D    +   V   + I  GC+  C +CV+P  RG E
Sbjct: 116 A------PNPIYQLDEPA--LPVADW---QVPPVNVHVPINYGCNMSCAYCVIPLRRGKE 164

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR + ++ +E R++   G  EITLLGQ V+++ G  L G +   +DLL  L E  GLVR
Sbjct: 165 RSRPMEEIAEEVRRICARGAKEITLLGQIVDSY-GHDLPG-RPDLADLLEYLHETPGLVR 222

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LR+ TSHP  MS+ L+     L  +MP ++LP+Q+G D++LK M R +T  +Y ++I+RI
Sbjct: 223 LRFLTSHPAFMSEKLLHTIARLPKVMPDINLPIQAGDDQLLKVMKRGYTVAKYTKLIERI 282

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM---- 378
           R + P++++S+D IVG PGET + F  T+++V+ I + +     YS R GT  ++M    
Sbjct: 283 REIIPNVSLSTDIIVGHPGETREMFERTLEMVENIRFDKVHIAAYSSRPGTKAADMELDP 342

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSV 438
              V+   K  R + L++         N+ C+G  +EVL+E+    KGK  GR    + V
Sbjct: 343 ALAVEHGEKQYRRIALERLQERIATERNEECLGHEVEVLVEEF--TKGKWRGRDRNNKLV 400

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468
              +     G ++ + +T+ +   L G L+
Sbjct: 401 FFEADGDWYGKVVNIHVTETRPWWLGGNLI 430


>gi|156538649|ref|XP_001607691.1| PREDICTED: similar to radical sam proteins [Nasonia vitripennis]
          Length = 660

 Score =  239 bits (609), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 147/435 (33%), Positives = 234/435 (53%), Gaps = 34/435 (7%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           Q+ +++ YGCQMNV D+  +  +     Y+    + DA++I+L TC IRE A  KV++ L
Sbjct: 163 QKVYLEVYGCQMNVNDTEVVSAILKKHNYKITKDIMDANVILLVTCAIRENAENKVWNKL 222

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            + R LK  ++     LL    GC+A+    +I+ +  IV+++ GP +Y  LP LL  + 
Sbjct: 223 KQFRILKERKVVSKIGLL----GCMAERLKHKIIEKEKIVDIIAGPDSYKDLPRLLAISN 278

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
             +  ++   S+++ +  ++ V    + K    A+++I  GCD  CT+C+VP+TRG E S
Sbjct: 279 EHETAINVALSLDETYADVTPVRLNPDSK---AAYVSIMRGCDNMCTYCIVPFTRGRERS 335

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG-------------------KGLDGEKC 245
           R +S ++DE ++L D G+ E+TLLGQNVN++R                    KG +    
Sbjct: 336 RPISSILDEVQQLSDQGIKEVTLLGQNVNSYRDISESKYYTSADTPQKTNLVKGFNTVYK 395

Query: 246 T------FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
           T      FS LL  +S I   +R+R+T+ HP+D  D +I    +   +   +HLP QSGS
Sbjct: 396 TKLGGLRFSHLLDKVSLINPEMRIRFTSPHPKDFPDEVIHLIAERPNICKQIHLPAQSGS 455

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
             +L  M R ++   Y  ++  IR++ PDIAISSDFI GF  ET+ +F  T+ L++++ Y
Sbjct: 456 TDVLTRMRRGYSREAYLDLVYHIRNIIPDIAISSDFIAGFCNETEKEFEETLTLIEEVKY 515

Query: 360 AQAFSFKYSPRLGTPGSNML-EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI 418
             AF F YS R  T       + VD+ +K +RL  + K  R +        +G+   VL+
Sbjct: 516 TTAFLFAYSMREKTTAYRRYSDNVDKKIKIQRLQKMIKLYRTEVERLYKNSIGKQQLVLV 575

Query: 419 EKHGKEKGK-LVGRS 432
           E   K   K L GR+
Sbjct: 576 EGESKRSVKDLQGRN 590


>gi|169343507|ref|ZP_02864506.1| MiaB-like tRNA modifying enzyme [Clostridium perfringens C str.
           JGS1495]
 gi|169298067|gb|EDS80157.1| MiaB-like tRNA modifying enzyme [Clostridium perfringens C str.
           JGS1495]
          Length = 434

 Score =  239 bits (609), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 160/445 (35%), Positives = 250/445 (56%), Gaps = 23/445 (5%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y+S  M + F  +GYE V+  + AD+ V+NTC +     +K    +GR R  
Sbjct: 7   TLGCRVNTYESEAMTEKFVREGYEVVDFNEMADVYVVNTCSVTNMGDKKSRQIIGRAR-- 64

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPI--VNVVVGPQTYYRLPELLERAR-FGK 147
                ++  + ++ V GC AQ    E+   S I  V+VV+G +    +   + +AR  GK
Sbjct: 65  -----RQNPEAIIAVVGCYAQIAPTEV---SGIEGVDVVLGSRNKGEIVYYVNKARDEGK 116

Query: 148 RVVDTDYSVEDK-FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           + V     +++K FE L I +  YN K    AFL IQ+GC++FC +C++PYTRG   S+ 
Sbjct: 117 QQVKVGAVLKNKVFEDLKIEE--YNNK--TRAFLKIQDGCNRFCAYCLIPYTRGSVCSKD 172

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
             +V++E R L D+G  EI L G +  ++ G  LD EK T  DLL  + +I G+ R+R  
Sbjct: 173 PKKVLEEIRSLADHGFKEIILSGIHTASY-GVDLD-EKVTLVDLLEEIEKIDGIERVRIG 230

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
           +  P   ++ +++    L  L P+ HL +QSG D  LK MNRR+TA EY  I++ +R   
Sbjct: 231 SIDPTFFTEDVVRRILALKKLCPHFHLSLQSGCDATLKRMNRRYTAKEYEDIVNLLRDKI 290

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
            D++I++D IVGFPGETD++F  T + + +I  ++   FKYSPR GT   NM  QVD N 
Sbjct: 291 EDVSITTDVIVGFPGETDEEFEETYEFLKRIALSKTHIFKYSPRKGTRAENMENQVDGNK 350

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK-NH 445
           K ER   L +  R  + +F +  +G++I+VL E+   E G  V        + +N+K + 
Sbjct: 351 KDERSKKLIELNRINEKAFAEKYIGEVIDVLFEEE-VELGSGVYTGYTRNYIKVNAKADC 409

Query: 446 NI-GDIIKVRITDVKISTLYGELVV 469
           N+ G I+ V+I   +     GE+V+
Sbjct: 410 NVSGKILNVKINSFEGEVAKGEIVL 434


>gi|110801313|ref|YP_696705.1| MiaB-like tRNA modifying enzyme [Clostridium perfringens ATCC
           13124]
 gi|110675960|gb|ABG84947.1| MiaB-like tRNA modifying enzyme [Clostridium perfringens ATCC
           13124]
          Length = 434

 Score =  239 bits (609), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 160/445 (35%), Positives = 250/445 (56%), Gaps = 23/445 (5%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y+S  M + F  +GYE V+  + AD+ V+NTC +     +K    +GR R  
Sbjct: 7   TLGCRVNTYESEAMTEKFVREGYEVVDFNEMADVYVVNTCSVTNMGDKKSRQIIGRAR-- 64

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPI--VNVVVGPQTYYRLPELLERAR-FGK 147
                ++  + ++ V GC AQ    E+   S I  V+VV+G +    +   + +AR  GK
Sbjct: 65  -----RQNPEAIIAVVGCYAQIAPTEV---SGIEGVDVVLGSRNKGEIVYYVNKARDEGK 116

Query: 148 RVVDTDYSVEDK-FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           + V     +++K FE L I +  YN K    AFL IQ+GC++FC +C++PYTRG   S+ 
Sbjct: 117 QQVKVGAVLKNKVFEDLKIEE--YNNK--TRAFLKIQDGCNRFCAYCLIPYTRGSVCSKD 172

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
             +V+DE R L ++G  EI L G +  ++ G  LD EK T  DLL  + +I G+ R+R  
Sbjct: 173 PKKVLDEIRSLAEHGFKEIILSGIHTASY-GVDLD-EKVTLVDLLEEIEKIDGIERVRIG 230

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
           +  P   ++ +++    L  L P+ HL +QSG D  LK MNRR+TA EY  I++ +R   
Sbjct: 231 SIDPTFFTEDVVRRILALKKLCPHFHLSLQSGCDATLKRMNRRYTAKEYEDIVNLLRDKI 290

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
            D++I++D IVGFPGETD++F  T + + +I  ++   FKYSPR GT   NM  QVD N 
Sbjct: 291 EDVSITTDVIVGFPGETDEEFEETYEFLKRIALSKTHIFKYSPRKGTRAENMENQVDGNK 350

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK-NH 445
           K ER   L +  R  + +F +  +G++I+VL E+   E G  V        + +N+K + 
Sbjct: 351 KDERSKKLIELNRINEKAFAEKYIGEVIDVLFEEE-VELGSGVYTGYTRNYIKVNAKADC 409

Query: 446 NI-GDIIKVRITDVKISTLYGELVV 469
           N+ G I+ V+I   +     GE+V+
Sbjct: 410 NVSGKILNVKINSFEGEVAKGEIVL 434


>gi|182626906|ref|ZP_02954640.1| MiaB-like tRNA modifying enzyme [Clostridium perfringens D str.
           JGS1721]
 gi|177907756|gb|EDT70368.1| MiaB-like tRNA modifying enzyme [Clostridium perfringens D str.
           JGS1721]
          Length = 434

 Score =  239 bits (609), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 160/445 (35%), Positives = 250/445 (56%), Gaps = 23/445 (5%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y+S  M + F  +GYE V+  + AD+ V+NTC +     +K    +GR R  
Sbjct: 7   TLGCRVNTYESEAMTEKFVREGYEVVDFNEMADVYVVNTCSVTNMGDKKSRQIIGRAR-- 64

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPI--VNVVVGPQTYYRLPELLERAR-FGK 147
                ++  + ++ V GC AQ    E+   S I  V+VV+G +    +   + +AR  GK
Sbjct: 65  -----RQNPEAIIAVVGCYAQIAPTEV---SGIEGVDVVLGSRNKGEIVYYVNKARDEGK 116

Query: 148 RVVDTDYSVEDK-FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           + V     +++K FE L I +  YN K    AFL IQ+GC++FC +C++PYTRG   S+ 
Sbjct: 117 QQVKVGAVLKNKVFEDLKIEE--YNNK--TRAFLKIQDGCNRFCAYCLIPYTRGSVCSKD 172

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
             +V+DE R L ++G  EI L G +  ++ G  LD EK T  DLL  + +I G+ R+R  
Sbjct: 173 PKKVLDEIRSLAEHGFKEIILSGIHTASY-GVDLD-EKVTLVDLLEEIEKIDGIERVRIG 230

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
           +  P   ++ +++    L  L P+ HL +QSG D  LK MNRR+TA EY  I++ +R   
Sbjct: 231 SIDPTFFTEDVVRRILALKKLCPHFHLSLQSGCDSTLKRMNRRYTAKEYEDIVNLLRDKI 290

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
            D++I++D IVGFPGETD++F  T + + +I  ++   FKYSPR GT   NM  QVD N 
Sbjct: 291 EDVSITTDVIVGFPGETDEEFEETYEFLKRIALSKTHIFKYSPRKGTRAENMENQVDGNK 350

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK-NH 445
           K ER   L +  R  + +F +  +G++I+VL E+   E G  V        + +N+K + 
Sbjct: 351 KDERSKKLIELNRINEKAFAEKYIGEVIDVLFEEE-VELGSGVYTGYTRNYIKVNAKADC 409

Query: 446 NI-GDIIKVRITDVKISTLYGELVV 469
           N+ G I+ V+I   +     GE+V+
Sbjct: 410 NVSGKILNVKINSFEGEVAKGEIVL 434


>gi|268571887|ref|XP_002641175.1| Hypothetical protein CBG09036 [Caenorhabditis briggsae]
          Length = 997

 Score =  239 bits (609), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 156/466 (33%), Positives = 245/466 (52%), Gaps = 41/466 (8%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           +YGCQMNV D   +  +    G+      + AD+++L TC IR+ A +KV++ L  IR+ 
Sbjct: 540 TYGCQMNVSDMEIVRSIMTQYGFVESEKKEKADVVLLMTCSIRDGAEKKVWNHLKLIRS- 598

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
            NS  K     +V V GC+A+    ++L +  +VN+V GP +Y  LP L+  A  G   +
Sbjct: 599 -NSVNKSQ---IVGVLGCMAERVRHDLLAKRNLVNIVAGPDSYRDLPRLVAIAAGGSNAI 654

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
           +   S+++ +  +  +      K   TAF++I  GCD  CT+CVVP+TRG E SR +  +
Sbjct: 655 NVQLSLDETYADVQPIRVDAATK---TAFISIMRGCDNMCTYCVVPFTRGRERSRPIESI 711

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC-------------------TFSDLL 251
           V+E R+L D+G  +ITLLGQNVN++R   +                        TF+ LL
Sbjct: 712 VEEVRRLRDDGYKQITLLGQNVNSYRDLTISPSTSSEDRVPGFKTVYKPKTGGLTFTSLL 771

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
             +++    VR R+T+ HP+D    LI+       L   LHLP QSG D  L+ M R +T
Sbjct: 772 EQVADAAPEVRFRFTSPHPKDFPMQLIELIASRPNLCKQLHLPAQSGDDDTLERMGRGYT 831

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
              Y +++D IR + P++ ++SDFI GF GET+   + T+ L+ ++GY+  F F YS R 
Sbjct: 832 RDLYLRLVDDIRKILPNVFLTSDFIAGFCGETEQAHQMTLSLIRQVGYSFCFVFPYSMRG 891

Query: 372 GTPGSNML-EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK----- 425
            T   + L + V E VKA+R L L    RE+ +  N   +G   E ++ + G  +     
Sbjct: 892 KTRAHHRLADDVPEEVKAQRHLDLTTVFREEALKLNQTLIG--TEQIVLREGTSRRDATF 949

Query: 426 --GKLVGRSPWLQSVVLNSKN-HNIGDIIKVRITDVKISTLYGELV 468
             G++ G    +++V  N ++    G   KV IT+    TL  +L+
Sbjct: 950 SYGRIDG---GVKTVFPNPEDIVKPGQYAKVLITEANSQTLRAQLI 992


>gi|330686099|gb|EGG97720.1| tRNA methylthiotransferase YqeV [Staphylococcus epidermidis VCU121]
          Length = 448

 Score =  239 bits (609), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 148/444 (33%), Positives = 244/444 (54%), Gaps = 25/444 (5%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  +  +F    YERV+   +AD+ V+NTC +     +K    + R    
Sbjct: 8   TLGCKVNHYETEAIWQLFKEADYERVDFETNADVFVINTCTVTNTGDKKSRQIIRRA--- 64

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               I++  D +V V GC AQ    EI+   P V+VVVG Q  ++L + ++  +  ++ +
Sbjct: 65  ----IRKNPDAVVCVTGCYAQTSSAEIME-IPGVDVVVGTQDRHKLLDYIDEFQKERQPI 119

Query: 151 DTDYSV--EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           +   ++    K+E L   D  Y   R   A L IQEGC+ FCTFC++P+ RG+  SR   
Sbjct: 120 NGVGNIMKNRKYEEL---DVPYFTDR-TRASLKIQEGCNNFCTFCIIPWARGLMRSRDPE 175

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
           +VV++A  L++ G  EI L G +     G G D +    + LL  L ++ GL R+R ++ 
Sbjct: 176 KVVEQATTLVNAGYKEIVLTGIHTG---GYGQDLKNYNLAQLLRDLDQVDGLERIRISSI 232

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
               ++D +I      + ++ +LH+P+QSGSD +LK M R++T   + + I ++    PD
Sbjct: 233 EASQLTDEVIDVLERSNKIVRHLHVPLQSGSDTVLKRMRRKYTMEHFSERITKLHEALPD 292

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           +AI+SD IVGFPGET+++F+ T D + K  +++   F YS R+GTP + M +Q+DE +K 
Sbjct: 293 VAITSDVIVGFPGETEEEFQETYDFIVKHKFSELHVFPYSSRIGTPAARMDDQIDEEIKN 352

Query: 389 ER---LLCLQKKLREQQVS-FNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
           ER   L+ L  +L ++  S F D    +++EV+ E+ G++   LVG +     V      
Sbjct: 353 ERVHKLIALSDQLAKEYASKFED----EVLEVIPEEKGEKPNTLVGYADNYMKVEFEGSE 408

Query: 445 HNIGDIIKVRITDVKISTLYGELV 468
             IG IIKV+I        YG+ +
Sbjct: 409 DLIGQIIKVKIQKADYPLNYGKAI 432


>gi|17553146|ref|NP_498290.1| hypothetical protein F25B5.5 [Caenorhabditis elegans]
 gi|2501544|sp|Q09316|CK5P1_CAEEL RecName: Full=CDK5RAP1-like protein
 gi|726392|gb|AAC46526.1| Hypothetical protein F25B5.5 [Caenorhabditis elegans]
          Length = 547

 Score =  239 bits (609), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 158/466 (33%), Positives = 245/466 (52%), Gaps = 36/466 (7%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           +YGCQMNV D   +  +    G+   +  ++AD+++L TC IR+ A +KV++ L  IR+ 
Sbjct: 85  TYGCQMNVSDMEIVRSIMTKYGFVESDKKENADIVLLMTCSIRDGAEKKVWNQLKLIRS- 143

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
             + + +G   +V V GC+A+    ++L +  +VN+V GP +Y  LP L+  A  G   +
Sbjct: 144 --NSVNKGQ--IVGVLGCMAERVRHDLLEKRNLVNIVAGPDSYRDLPRLVAVAAGGSNGI 199

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
           +   S+++ +  +  +      K   TAF++I  GCD  CT+CVVP+TRG E SR +  +
Sbjct: 200 NVQLSLDETYADVQPIRVDSASK---TAFISIMRGCDNMCTYCVVPFTRGRERSRPIESI 256

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKG---------------LDGEKC---------T 246
           V+E ++L D G  ++TLLGQNVN++R                  + G K          T
Sbjct: 257 VEEVQRLRDQGYKQVTLLGQNVNSYRDMTSMDFSMAPSTSQEDRVPGFKTVYKPKSGGLT 316

Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306
           F+ LL  +++    +R R+T+ HP+D    LI+       L   LHLP QSG D  L+ M
Sbjct: 317 FTTLLEKVADAAPDIRFRFTSPHPKDFPMQLIELIASRPNLCKQLHLPAQSGDDETLERM 376

Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
            R +T   Y +++D IR V P ++++SDFI GF GET+   + T+ L+  + Y+  F F 
Sbjct: 377 ERGYTRDLYLRLVDDIRHVLPSVSLTSDFIAGFCGETEQAHQNTLSLIRAVRYSFCFVFP 436

Query: 367 YSPRLGTPGSNML-EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK 425
           YS R  T   + L + V E+VKA R L L    RE+ +  N A +G    VL+E   K  
Sbjct: 437 YSMRGKTRAHHRLTDDVPEDVKARRHLDLTTVFREEALKLNQALIGSEQTVLLEGKSKRD 496

Query: 426 GKLV-GR-SPWLQSVVLNSK-NHNIGDIIKVRITDVKISTLYGELV 468
                GR    +++V  NSK     G   K+ ITD    TL  +L+
Sbjct: 497 ASFSHGRIDGGVKAVFDNSKLCLEPGQYAKILITDANSQTLKAQLI 542


>gi|302804139|ref|XP_002983822.1| hypothetical protein SELMODRAFT_180500 [Selaginella moellendorffii]
 gi|300148659|gb|EFJ15318.1| hypothetical protein SELMODRAFT_180500 [Selaginella moellendorffii]
          Length = 469

 Score =  239 bits (609), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 151/432 (34%), Positives = 233/432 (53%), Gaps = 28/432 (6%)

Query: 60  DDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGD-----LLVVVAGCVAQAEG 114
           +++D+I++NTC IR+ A  K++  L   +++K++  K G         V V GC+A+   
Sbjct: 26  EESDVILINTCAIRDNAENKIWQRLNYFKHIKSNWRKNGTKSSRPPPKVAVLGCMAERLK 85

Query: 115 EEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKR 174
           E+++    +V+VV GP  Y  LP LL     G++ ++T  S+E+ +  +S V      K 
Sbjct: 86  EKLIEADKMVDVVCGPDAYRDLPRLLSSVEQGQQAINTLLSLEETYADVSPVRIA---KD 142

Query: 175 GVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA 234
            VTAF++I  GC+  C FC+VP+TRG E SR L  +V E  +L + GV E+TLLGQNVN+
Sbjct: 143 SVTAFVSIMRGCNNMCAFCIVPFTRGRERSRPLESIVREVGELWEQGVKEVTLLGQNVNS 202

Query: 235 WRG-KGLDGEKCT------FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL 287
           +    G      T      F+ LL  L+E    +R R+T+ HP+D  D L+    +   +
Sbjct: 203 YCDLSGFSAIYRTNESGLRFASLLKCLAETYPEMRFRFTSPHPKDFPDDLLLVMREHHNV 262

Query: 288 MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDF 347
              +HLPVQSGS R+L+ M R +T   Y ++++RIR + P +A+SSDFI GF GET++D 
Sbjct: 263 CNSIHLPVQSGSSRVLERMRRGYTREAYLELVERIREIIPGVALSSDFIAGFCGETEEDH 322

Query: 348 RATMDLVDKIGYAQAFSFKYSPRLGTPGSNM-LEQVDENVKAERLLCLQKKLREQQVSFN 406
             T+ +V+ +GY  A+ F YS R  TP     ++ V E VK  RL  L    +    +  
Sbjct: 323 LQTLSIVETVGYEMAYMFAYSMREKTPAHRHDVDDVPEEVKQRRLSELIATFKRSSAARY 382

Query: 407 DACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNS---KNHNIGDI--------IKVR 454
            + +G+   VLIE   K    +  GR    Q V  +     +H  GD+        + V+
Sbjct: 383 HSQLGKTQLVLIEAPNKRNPNEWGGRCDSGQKVFFSRAPVPDHQSGDLVDTKPGDYVAVK 442

Query: 455 ITDVKISTLYGE 466
           I D   ++L GE
Sbjct: 443 ILDTTFASLRGE 454


>gi|289433046|ref|YP_003462919.1| RNA modification enzyme, MiaB family [Dehalococcoides sp. GT]
 gi|288946766|gb|ADC74463.1| RNA modification enzyme, MiaB family [Dehalococcoides sp. GT]
          Length = 418

 Score =  238 bits (608), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 153/445 (34%), Positives = 242/445 (54%), Gaps = 38/445 (8%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           +++ + GCQMN  +S R+  +F   GY   +  +DA+L+++N+C +RE A  KV + L  
Sbjct: 4   YYLWTIGCQMNQAESDRLGRLFELWGYSLADKAEDAELVLVNSCVVREHAENKVVNRLHL 63

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           +R+LKN   K    L + + GC+   +   I ++ P V+ + GP +   +P+  E     
Sbjct: 64  LRSLKNKNPK----LKIALTGCLVGQDISLIKKKFPFVDYIFGPGS---MPDWRE----- 111

Query: 147 KRVVDTDYSVEDKFERLSIVDGGY--NRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
                              +  G+    +  V+A +TI +GC+ FCT+CVVPY RG E S
Sbjct: 112 -------------------IPEGFILPLRPPVSANVTIMQGCNNFCTYCVVPYRRGREKS 152

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           RS++++  E  +L+  G  E+ LLGQNV+++ G  L  + C  +DLL +L +I GL+R+R
Sbjct: 153 RSIAEIGCEVAELVRRGSREVVLLGQNVDSY-GHELPEKPC-LADLLSALHDIPGLLRIR 210

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           + TSHP+D+S  LI A   L  +   L LPVQSG D IL +M R +T  +YR++++RI++
Sbjct: 211 FLTSHPKDISQKLIDAMAHLPKVCRSLSLPVQSGDDTILAAMRRGYTNQQYRELVERIKT 270

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQVD 383
             PDI++ +D IVGFP E ++ F  +  L+  IGY       YSPR  T  + +M + V 
Sbjct: 271 AMPDISLQTDLIVGFPSENEEQFNQSYKLMADIGYDAIHVAAYSPRPQTVAARDMADDVP 330

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
              K  RL  ++   +E     N A +    EVL+E  G +K K  GR+   + V L S 
Sbjct: 331 VIEKKRRLKLIEDLQKETVGKANAALMDTFAEVLVE--GLQKNKWQGRTLGGKLVFLESD 388

Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468
               G ++KV+I      +L  +LV
Sbjct: 389 LPLEGCLVKVKIFKTSPWSLQAKLV 413


>gi|225620134|ref|YP_002721391.1| 2-methylthioadenine synthetase [Brachyspira hyodysenteriae WA1]
 gi|225214953|gb|ACN83687.1| MiaB, 2-methylthioadenine synthetase [Brachyspira hyodysenteriae
           WA1]
          Length = 411

 Score =  238 bits (608), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 146/428 (34%), Positives = 234/428 (54%), Gaps = 30/428 (7%)

Query: 51  QGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVA 110
           +G+ +  + ++AD I++NTC +R  A E+V+S   R++    +R K   D  +++ GC+A
Sbjct: 3   EGFIQTENHENADNIIINTCSVRAHAEERVFS---RVKLFNANRKKNKKDTKIIIMGCMA 59

Query: 111 QAEGE--EILRRSPIVNVV--VGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIV 166
           Q   E  E L    I +V   V    Y +  E+  R      + +  Y  EDK  +    
Sbjct: 60  QTSKEHLENLGVDKIFDVYNEVNIIDYLKDEEVFVRKFNDNYIFNKSYVDEDKPHK---- 115

Query: 167 DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEIT 226
                      AF+ I  GC+ +CT+C+VP+TRG  +SR   ++++E ++LID+G  EIT
Sbjct: 116 -----------AFIPISHGCNNWCTYCIVPHTRGKMVSRKSDEIIEELKRLIDDGAKEIT 164

Query: 227 LLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI-----KGLVRLRYTTSHPRDMSDCLIKAH 281
           LLGQNVN++ G  +D E   F++LLY L +I     K  V +R+ TSHP+D    L  A 
Sbjct: 165 LLGQNVNSY-GLDIDNE-INFTELLYKLDKIIYEKAKDKVWIRFLTSHPKDFDKDLADAI 222

Query: 282 GDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPG 341
            +L+ L  ++HLP QSGSDRIL  MNR++T  EY + +  +R+   D  IS+D IVG+  
Sbjct: 223 WNLNSLCKHIHLPFQSGSDRILNLMNRKYTKDEYVKKVSYLRNYADDFPISTDIIVGYAD 282

Query: 342 ETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQ 401
           ET+D+++ T++L++ IG+ +A+ +KYS R G+       Q D+   A RL  L    RE 
Sbjct: 283 ETEDEYQETLNLLESIGFEEAYLYKYSEREGSIAYKKNVQYDKAAGARRLTNLVNYQREL 342

Query: 402 QVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS-KNHNIGDIIKVRITDVKI 460
                   VG+   V+++   K+    + RS   + +++   K  N+GDI    +T++K 
Sbjct: 343 AQKLLSKQVGKKTSVMVDDIAKDNMHYLCRSKENRIILVKKDKELNMGDIFNAEVTEIKS 402

Query: 461 STLYGELV 468
            TL G  +
Sbjct: 403 HTLIGNFI 410


>gi|296133939|ref|YP_003641186.1| RNA modification enzyme, MiaB family [Thermincola sp. JR]
 gi|296032517|gb|ADG83285.1| RNA modification enzyme, MiaB family [Thermincola potens JR]
          Length = 445

 Score =  238 bits (608), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 150/443 (33%), Positives = 236/443 (53%), Gaps = 23/443 (5%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  +  +F  QGY+ V   D AD+ V+NTC +      K    + R +  
Sbjct: 8   TLGCKVNQYETEALASLFRRQGYQVVEFSDKADVYVINTCTVTHLGDRKSRQMIRRAK-- 65

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
                +   D +V V GC AQ    E+      V++V+G     ++ E +E  +     V
Sbjct: 66  -----RNNPDAIVAVMGCYAQTSPGEVTAIEG-VDLVIGTSDRSKVVECVEDFKRQDTPV 119

Query: 151 D--TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           +   D     +FE L ++D  Y  +    AFL IQEGC+ FCT+C++PY RG   SR   
Sbjct: 120 NLVKDIMQAREFEELPVLD--YESR--TRAFLKIQEGCNNFCTYCIIPYARGPVRSRKRD 175

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAW---RGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            V+ EA +L+  G  EI L G ++ A+   R  G D      + L+  L+ IKGL RLR 
Sbjct: 176 NVITEAERLVGEGFREIVLTGIHIGAYGRDRDDGYD-----LAALVADLARIKGLRRLRL 230

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
            +  P D++  LI    D  V+  +LHLP+QSG D +L+ MNR++  +E+ ++++ IR++
Sbjct: 231 GSVEPEDVTPHLIATMADNRVICRHLHLPLQSGDDAVLEKMNRKYNTHEFTRLVNSIRAM 290

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
             DIAI++D IVGFPGETD+ F  T + V  +G+++   FKYSPR GTP +N   QV   
Sbjct: 291 VDDIAITTDIIVGFPGETDEQFDNTYNYVKALGFSRLHVFKYSPRKGTPAANFPGQVPAE 350

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKH-GKEKGKLVGRSPWLQSVVLNSKN 444
            K ER   L +  +E    F    +G+ +EVL+E+    +   + G +    +V     N
Sbjct: 351 TKEERSSRLIELGKEMGREFARRFLGREMEVLVEQRLEADLHYMEGLTDNYLAVAFPGGN 410

Query: 445 HNIGDIIKVRITDVKISTLYGEL 467
              G+ + V++T VK   ++GE+
Sbjct: 411 ELKGEFVTVKLTSVKEEHVFGEV 433


>gi|290996977|ref|XP_002681058.1| predicted protein [Naegleria gruberi]
 gi|284094681|gb|EFC48314.1| predicted protein [Naegleria gruberi]
          Length = 471

 Score =  238 bits (608), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 160/456 (35%), Positives = 251/456 (55%), Gaps = 54/456 (11%)

Query: 28  FVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRI 87
           F+++YGCQMNV D+  +  +    GY+ V+S  +A +I+LNTC +RE A  K++  L  +
Sbjct: 13  FIETYGCQMNVSDTQIILSILDKNGYKLVDSDKEASVILLNTCAVRENAENKIWIRLNEL 72

Query: 88  R-------NLKNSRIKEG--GDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPE 138
           +       +L N   +E     + + V GC+A+    +++  + +V+VVVGP  Y  LP 
Sbjct: 73  KKKRHENKHLHNFNPEEYPVSGVQIGVLGCMAERLKTKLIE-TNMVDVVVGPDQYRDLPN 131

Query: 139 LL---ERARFGKRVVDTDYSVEDKFERLSIV---DGGYNR-------KRGVTAFLTIQEG 185
           LL   E +   +R +D +  VE +  +L+++   D  Y           G +AF++I  G
Sbjct: 132 LLKKNEESEMLQRSLDDN--VEGRQAQLNVMLSMDETYADIEPVRVGDTGKSAFVSIMRG 189

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR--------- 236
           CD  C++C+VP+TRG E SR ++ +++E R+L  NG+ E+TLLGQNVN++R         
Sbjct: 190 CDNMCSYCIVPFTRGRERSRDITSILNEIRQLSKNGIKEVTLLGQNVNSYRDTSDSIYQE 249

Query: 237 -----GKGL---DGEKC---------TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIK 279
                GK +   DG K          TF++LLY +S+I   +R+RYT+ HP+D  D LI+
Sbjct: 250 KYKNEGKEIETTDGFKTIYKPKIGGLTFTELLYEVSQIDKEMRIRYTSPHPKDYPDSLIE 309

Query: 280 AHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGF 339
              +   +   +HLP QSGS  +L  M R +TA  Y  ++DRI++  P++A+SSDFI GF
Sbjct: 310 LIRETPNICNQIHLPAQSGSTNMLDRMRRGYTAESYIALVDRIKNRIPNVALSSDFIAGF 369

Query: 340 PGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKL 398
             ET+ D + T+ L++ + Y QA+ F YS R  T    N  + V  +VK  RL  L +  
Sbjct: 370 CSETEQDHQDTLKLLNHVKYDQAYLFAYSLREKTHAHRNYEDDVPADVKNRRLNELVQTY 429

Query: 399 REQQVSFNDACVGQIIEVLIEKHGKE--KGKLVGRS 432
           RE      +  VG +  VLI+   K   +   VGR+
Sbjct: 430 RENLAIQYEKEVGTLQCVLIDSDSKRDPQNYWVGRT 465


>gi|118792628|ref|XP_320425.3| AGAP012104-PA [Anopheles gambiae str. PEST]
 gi|116116988|gb|EAA00300.4| AGAP012104-PA [Anopheles gambiae str. PEST]
          Length = 538

 Score =  238 bits (608), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 152/482 (31%), Positives = 251/482 (52%), Gaps = 43/482 (8%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F++ YGCQMN  D+  +  +  +  Y R  ++ +AD++++ TC IRE A + V++ L
Sbjct: 46  RKVFLEVYGCQMNTNDTEIVWSILKAHQYHRTVNLKEADIVLMMTCAIREGAEDTVWNRL 105

Query: 85  GRIRNLKNSRIKEGGDLLVV-VAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
             +R LK  R   G   L + V GC+A+   ++++ +   V+VV GP  Y  LP LL   
Sbjct: 106 KHLRLLKRKRETNGEKPLQIGVLGCMAERLKKQLVEKEHSVDVVAGPDAYKDLPRLLAIG 165

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           + G++ ++   S+++ +    +V    +RK   TAF++I  GCD  C++C+VP+TRG E 
Sbjct: 166 QRGQKAINVLLSLDETY--ADVVPVKLDRK-SKTAFVSIMRGCDNMCSYCIVPFTRGKER 222

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG----LDGEK--------------- 244
           SR +  + +E  +L + G+ EITLLGQNVN++R        D  K               
Sbjct: 223 SRPIKSIREEVLQLENEGIREITLLGQNVNSYRDTSDESLEDAPKEATLLAPGFRTVYKS 282

Query: 245 ----CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300
                 F++LL  L+E    +R+R+T+ HP+D    +++       +   LHLP QSG+ 
Sbjct: 283 KVGGLRFAELLTELAEAVPEMRIRFTSPHPKDFPVDVLETIAKYPNICNSLHLPAQSGNT 342

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
           ++L+ M R +T   Y  +++ +R + P++ +SSDFI GF GE++ +F  T+ L++++GY 
Sbjct: 343 QVLERMRRGYTREAYLNLVEEVRRIIPNVTLSSDFICGFCGESEPEFADTVSLIEQVGYH 402

Query: 361 QAFSFKYSPRLGTPGSNML-EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419
            AF F YS R  T       + V E VK ERL  +    R +    N   V +   VLIE
Sbjct: 403 AAFLFAYSMREKTTAHRRYSDDVPEEVKQERLRRMIAAFRREAERLNSLFVDRTELVLIE 462

Query: 420 KHGK-EKGKLVGRSPWLQSVVLNS--------------KNHNIGDIIKVRITDVKISTLY 464
            + K  +  L GR+     V++ +              +   +GD + VRIT      L 
Sbjct: 463 GYSKRSRTDLAGRNDGNVKVIVPAGQVRSDRAADRDDVRPLGVGDYVAVRITGSNSQILK 522

Query: 465 GE 466
           GE
Sbjct: 523 GE 524


>gi|109947120|ref|YP_664348.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Helicobacter
           acinonychis str. Sheeba]
 gi|109714341|emb|CAJ99349.1| unnamed protein product [Helicobacter acinonychis str. Sheeba]
          Length = 427

 Score =  238 bits (607), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 151/440 (34%), Positives = 238/440 (54%), Gaps = 25/440 (5%)

Query: 36  MNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRI 95
           MN  DS  +        Y+  N    ADLI++NTC +REK   K++S +G+   +K    
Sbjct: 1   MNSRDSEHLLSELSKLDYKETNDPKIADLILINTCSVREKPERKLFSEIGQFAKIKKPNA 60

Query: 96  KEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYS 155
           K G      V GC A   G +IL++SP V+ V+G +   ++ +++ + +  +  +D D S
Sbjct: 61  KIG------VCGCTASHMGADILKKSPSVSFVLGARNVSKISQVIHKEKAVEVAIDYDES 114

Query: 156 VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEAR 215
                   S     + +K  V + L I  GCDK CT+C+VP+TRG EIS  +  ++ EA 
Sbjct: 115 --------SYAFEFFEKKAEVRSLLNISIGCDKKCTYCIVPHTRGKEISIPMDLILKEAE 166

Query: 216 KLIDNGVCEITLLGQNVNAWRGKGLDGE--KCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
           KL +NG  E+ LLGQNVN + G     E  K  FSDLL  LSEI G+ R+R+T+ HP  M
Sbjct: 167 KLANNGTKELMLLGQNVNNY-GVRFSSEHAKVNFSDLLDKLSEIPGIERIRFTSPHPLHM 225

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
           +D  ++       +   +H+P+QSGS  +LK M R +    +   +++++++ P++ IS+
Sbjct: 226 NDEFLERFAKNPKVCKSIHMPLQSGSSAVLKMMRRGYNKEWFLNRVEKLKALVPEVGIST 285

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLC 393
           D IVGFP E+D DF  TM++++K+ +   +SF YSPR  T      E+V   V + RL  
Sbjct: 286 DIIVGFPNESDKDFEDTMEVLEKVCFDTLYSFIYSPRPFTEAGAWKERVPLEVSSLRLER 345

Query: 394 LQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV---GRSPWLQSVVLNSK-NHNIGD 449
           LQ + +E         VG+   VL+E   +  G++V   GRS   + + +  K   N G+
Sbjct: 346 LQNRHKEILEEKARLEVGKTHVVLVENRHEVDGQIVGFEGRSDTGKFIEVTCKEKRNPGE 405

Query: 450 IIKVRITDVKISTLYGELVV 469
           +++V I    IS + G L+ 
Sbjct: 406 LVEVEI----ISHVKGRLMA 421


>gi|319400912|gb|EFV89131.1| RNA modification enzyme, MiaB family protein [Staphylococcus
           epidermidis FRI909]
          Length = 448

 Score =  238 bits (607), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 141/431 (32%), Positives = 243/431 (56%), Gaps = 25/431 (5%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  +  +F    YERV    +AD+ V+NTC +     +K    + R    
Sbjct: 8   TLGCKVNHYETEAIWQLFKDANYERVEFETNADVFVINTCTVTNTGDKKSRQIIRRA--- 64

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               I++  D +V V GC AQ    EI+   P V++VVG Q  ++L + +++ +  ++ +
Sbjct: 65  ----IRQNPDAVVCVTGCYAQTSSAEIME-IPGVDIVVGTQDRHKLLDYIQQFQEERQPI 119

Query: 151 DTDYSV--EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           +   ++     +E L +    Y   R   A L IQEGC+ FCTFC++P+ RG+  SR   
Sbjct: 120 NGVGNIMKNRTYEELEV---PYFTDR-TRASLKIQEGCNNFCTFCIIPWARGLMRSRDPE 175

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
           +VV++A +L+++G  EI L G +     G G D +    + LL  L  I+GL R+R ++ 
Sbjct: 176 KVVEQATQLVNSGYKEIVLTGIHTG---GYGQDLKNYNLAQLLRDLDTIEGLERIRISSI 232

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
               ++D +I   G+ + ++ +LH+P+QSGSD +LK M R++T   + + + ++    PD
Sbjct: 233 EASQLTDEVIDVIGNSNKVVRHLHIPLQSGSDDVLKRMRRKYTMAHFSERLTKLHQALPD 292

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE---N 385
           +A++SD IVGFPGE++++F+ T D +    +++   F YSPR+GTP + M  Q+DE   N
Sbjct: 293 LAVTSDVIVGFPGESEEEFQETYDFIVNHHFSELHVFPYSPRIGTPAARMDNQIDEETKN 352

Query: 386 VKAERLLCLQKKLREQQVS-FNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
           V+  +L+ L  +L ++  S F D    +++EV+ E+ G+E   LVG +     V     +
Sbjct: 353 VRVHKLISLSNQLAKEYASKFED----EVLEVIPEEMGEEPQTLVGYADNYMKVRFEGDD 408

Query: 445 HNIGDIIKVRI 455
             IG I+KV+I
Sbjct: 409 SLIGQIVKVKI 419


>gi|15924566|ref|NP_372100.1| hypothetical protein SAV1576 [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|15927156|ref|NP_374689.1| hypothetical protein SA1405 [Staphylococcus aureus subsp. aureus
           N315]
 gi|156979894|ref|YP_001442153.1| hypothetical protein SAHV_1563 [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|255006362|ref|ZP_05144963.2| hypothetical protein SauraM_07835 [Staphylococcus aureus subsp.
           aureus Mu50-omega]
 gi|13701374|dbj|BAB42668.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           N315]
 gi|14247347|dbj|BAB57738.1| putative 2-methylthioadenine synthetase [Staphylococcus aureus
           subsp. aureus Mu50]
 gi|156722029|dbj|BAF78446.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           Mu3]
          Length = 448

 Score =  238 bits (607), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 147/431 (34%), Positives = 238/431 (55%), Gaps = 23/431 (5%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  +  +F    YERV+   +AD+ V+NTC +     +K    + R    
Sbjct: 8   TLGCKVNHYETEAIWQLFKEANYERVDFEANADVFVINTCTVTNTGDKKSRQIIRRA--- 64

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               I++  D ++ V GC AQ    EI+   P V+VVVG Q  ++L   ++  R  ++ +
Sbjct: 65  ----IRQNPDAVICVTGCYAQTSSAEIME-IPGVDVVVGTQDRHKLLGYIDEFRKERQPI 119

Query: 151 DTDYSV--EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           +   ++    K+E L   D  Y   R   A L IQEGC+ FCTFC++P+ RG+  SR   
Sbjct: 120 NGVGNIMKNRKYEEL---DVPYFTDR-TRASLKIQEGCNNFCTFCIIPWARGLMRSRDPE 175

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
           +VV++A +L+++G  EI L G +     G G D +    + LL  L  I GL R+R ++ 
Sbjct: 176 KVVEQATQLVNSGYKEIVLTGIHTG---GYGQDLKDYNLAQLLRDLETINGLERIRISSI 232

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
               ++D +I        ++ +LH+P+QSGSD +LK M R++T   + + + ++    PD
Sbjct: 233 EASQLTDEVIDVLERSTKVVRHLHIPLQSGSDTVLKRMRRKYTMDRFSERLTKLHKALPD 292

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           +A++SD IVGFPGET+ +F+ T D + K  +++   F YSPR+GTP + M +Q+DE +K 
Sbjct: 293 LAVTSDVIVGFPGETEAEFQETYDFIVKHKFSELHVFPYSPRIGTPAARMDDQIDEEIKN 352

Query: 389 ER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445
           ER   L+ L  +L +  VS  D     ++EV+ E+ G  +G LVG +     V       
Sbjct: 353 ERVHKLITLSNQLGKLYVSKFDQ---DVLEVIPEEQGDTEGTLVGYADNYMKVQFEGDES 409

Query: 446 NIGDIIKVRIT 456
            IG I+KV+IT
Sbjct: 410 LIGQIVKVKIT 420


>gi|317008919|gb|ADU79499.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Helicobacter
           pylori India7]
          Length = 426

 Score =  238 bits (607), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 146/426 (34%), Positives = 233/426 (54%), Gaps = 21/426 (4%)

Query: 36  MNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRI 95
           MN  DS  +        Y+  +    ADLI++NTC +REK   K++S +G+   +K    
Sbjct: 1   MNSRDSEHLLSELSKLDYKETSDPKTADLILINTCSVREKPERKLFSEIGQFAKIKKPNA 60

Query: 96  KEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYS 155
           K G      V GC A   G +IL+++P V+ V+G +   ++ +++ + +  +  +D D S
Sbjct: 61  KIG------VCGCTASHMGADILKKAPSVSFVLGARNVSKISQIIHKEKAVEVAIDYDES 114

Query: 156 VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEAR 215
               FE        + +K  + + L I  GCDK C +C+VP+TRG EIS  +  ++ EA 
Sbjct: 115 AY-AFE-------FFEKKAQIRSLLNISIGCDKKCAYCIVPHTRGKEISIPMDLILKEAE 166

Query: 216 KLIDNGVCEITLLGQNVNAWRGKGLDGE--KCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
           KL +NG  E+ LLGQNVN + G    GE  K  FSDLL  LSEI G+ R+R+T+ HP  M
Sbjct: 167 KLANNGTKELMLLGQNVNNY-GVRFSGEHAKVDFSDLLDKLSEIPGIERIRFTSPHPLHM 225

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
           +D  ++       +   +H+P+QSGS  +LK M R ++   +   ++R++++ P++ IS+
Sbjct: 226 NDGFLERFAKNPKVCKSIHMPLQSGSSAVLKMMRRGYSKEWFLNRVERLKALVPEVGIST 285

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLC 393
           D IVGFP E+D DF  TM++++K+ +   +SF YSPR  T      E+V   V + RL  
Sbjct: 286 DIIVGFPNESDKDFEDTMEVLEKVRFDTLYSFIYSPRPFTEAGAWKERVPLEVSSSRLER 345

Query: 394 LQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV---GRSPWLQSVVLNSK-NHNIGD 449
           LQ + +E         VG+   VL+E   +   ++V   GRS   + + +  K   N G+
Sbjct: 346 LQNRHKEILEEKAKLEVGKTHVVLVENRREMDNQIVGFEGRSDTGKFIEVTCKEKRNPGE 405

Query: 450 IIKVRI 455
           ++KV I
Sbjct: 406 LVKVEI 411


>gi|242242851|ref|ZP_04797296.1| 2-methylthioadenine synthase [Staphylococcus epidermidis W23144]
 gi|242233693|gb|EES36005.1| 2-methylthioadenine synthase [Staphylococcus epidermidis W23144]
          Length = 451

 Score =  238 bits (607), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 141/431 (32%), Positives = 243/431 (56%), Gaps = 25/431 (5%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  +  +F    YERV    +AD+ V+NTC +     +K    + R    
Sbjct: 11  TLGCKVNHYETEAIWQLFKDANYERVEFETNADVFVINTCTVTNTGDKKSRQIIRRA--- 67

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               I++  D +V V GC AQ    EI+   P V++VVG Q  ++L + +++ +  ++ +
Sbjct: 68  ----IRQNPDAVVCVTGCYAQTSSAEIME-IPGVDIVVGTQDRHKLLDYIQQFQEERQPI 122

Query: 151 DTDYSV--EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           +   ++     +E L +    Y   R   A L IQEGC+ FCTFC++P+ RG+  SR   
Sbjct: 123 NGVGNIMKNRTYEELEV---PYFTDR-TRASLKIQEGCNNFCTFCIIPWARGLMRSRDPE 178

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
           +VV++A +L+++G  EI L G +     G G D +    + LL  L  I+GL R+R ++ 
Sbjct: 179 KVVEQATQLVNSGYKEIVLTGIHTG---GYGQDLKNYNLAQLLRDLDTIEGLERIRISSI 235

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
               ++D +I   G+ + ++ +LH+P+QSGSD +LK M R++T   + + + ++    PD
Sbjct: 236 EASQLTDEVIDVIGNSNKVVRHLHIPLQSGSDDVLKRMRRKYTMAHFSERLTKLHQALPD 295

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE---N 385
           +A++SD IVGFPGE++++F+ T D +    +++   F YSPR+GTP + M  Q+DE   N
Sbjct: 296 LAVTSDVIVGFPGESEEEFQETYDFIVNHHFSELHVFPYSPRIGTPAARMDNQIDEETKN 355

Query: 386 VKAERLLCLQKKLREQQVS-FNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
           V+  +L+ L  +L ++  S F D    +++EV+ E+ G+E   LVG +     V     +
Sbjct: 356 VRVHKLISLSNQLAKEYASKFED----EVLEVIPEEMGEEPHTLVGYADNYMKVRFEGDD 411

Query: 445 HNIGDIIKVRI 455
             IG I+KV+I
Sbjct: 412 SLIGQIVKVKI 422


>gi|308069953|ref|YP_003871558.1| hypothetical protein PPE_03202 [Paenibacillus polymyxa E681]
 gi|305859232|gb|ADM71020.1| Conserved hypothetical protein [Paenibacillus polymyxa E681]
          Length = 447

 Score =  238 bits (607), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 144/444 (32%), Positives = 246/444 (55%), Gaps = 21/444 (4%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVN-SMDDADLIVLNTCHIREKAAEKVYSFLGRIRN 89
           + GC++N YD+  +  +F ++GYE+V+     AD+ ++NTC +     +K          
Sbjct: 8   TLGCKVNFYDTEAIWQLFKNEGYEQVDFDEQTADVYLINTCTVTNTGDKKSRQ------- 60

Query: 90  LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149
           +    I+   D +V V GC AQ    EI+   P V++V+G Q   ++   ++  +  ++ 
Sbjct: 61  IIRRAIRRNPDAIVAVTGCYAQTSPAEIMD-IPGVDLVIGTQDRDKIIPFVQEIQETRQP 119

Query: 150 VDTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
           V+   ++     FE + + D   N  R   AFL IQ+GC+ FCTFC++P++RG+  SR  
Sbjct: 120 VNAVRNIMKTRVFEEMDVPDFA-NHTR---AFLKIQDGCNNFCTFCIIPWSRGLSRSRDA 175

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
           + ++ +AR+L+  G  EI L G +     G G D +    SDLL+ L +++GL R+R ++
Sbjct: 176 ASIIAQARQLVHAGYKEIVLTGIHTG---GYGDDMDNYDLSDLLWDLEKVEGLERIRISS 232

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
                + + ++        L+ + H+P+Q+G D +LK M R++T  E+   +  IR   P
Sbjct: 233 IEASQIDEKMLDVLNRSTKLVRHFHIPLQAGDDTVLKRMRRKYTTEEFYNKMLMIRKAMP 292

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
           D+AI++D IVGFPGETD+ FR   +L+ KIG+++   F YS R GTP + M +QVDE+VK
Sbjct: 293 DVAITTDVIVGFPGETDEMFRNGYELMKKIGFSEMHVFPYSKRSGTPAARMEDQVDEDVK 352

Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIE---KHGKEKGKLVGRSPWLQSVVLNSKN 444
             R+  L +   + Q+++ +  VGQ++EV+ E   K  ++ G L G S     +V     
Sbjct: 353 NARVHELIQLSEQMQLAYAEKFVGQVLEVIPEVAPKGTEDSGILYGYSDNYIQLVFEGTE 412

Query: 445 HNIGDIIKVRITDVKISTLYGELV 468
             +G + +V++T   I+   G+LV
Sbjct: 413 DMVGKVCRVKLTKAGINESEGQLV 436


>gi|153815340|ref|ZP_01968008.1| hypothetical protein RUMTOR_01574 [Ruminococcus torques ATCC 27756]
 gi|145847402|gb|EDK24320.1| hypothetical protein RUMTOR_01574 [Ruminococcus torques ATCC 27756]
          Length = 442

 Score =  238 bits (607), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 144/453 (31%), Positives = 251/453 (55%), Gaps = 25/453 (5%)

Query: 13  MVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHI 72
           M+ +I  +  + ++  + + GC++N Y++  M++M    GYE V   + AD+ ++NTC +
Sbjct: 1   MIERIGKRGKLMKKAALHNLGCKVNAYETEAMQEMLEQAGYEIVPFKEGADVYIINTCTV 60

Query: 73  REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQA-EGEEILRRSPIVNVVVGPQ 131
              A  K    L R R L         D +VV AGC  QA EG+EI    P +++V+G  
Sbjct: 61  TNIADRKSRQMLHRARKL-------NPDAVVVAAGCYVQAQEGKEI---DPCIDIVIGNN 110

Query: 132 TYYRLPELLERARFGKRVVDTDYSVED-----KFERLSIVDGGYNRKRGVTAFLTIQEGC 186
               LPELL++    K    T+Y++ED     ++E L +   G + +    A++ +Q+GC
Sbjct: 111 HKKDLPELLKQYEMEKSG-HTEYAMEDINRTKEYEELHLTKPGDHTR----AYIKVQDGC 165

Query: 187 DKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT 246
           ++FCT+C++PY RG   SR    V++E R L  NG  E+ L G +++++ G   DG++  
Sbjct: 166 NQFCTYCIIPYARGRVRSRQTKDVLEEVRDLAGNGYKEVVLTGIHLSSY-GIDFDGQRHL 224

Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306
             DL+  + +++G+ R+R  +  P  +++   K   ++  + P+ HL +QSG D  LK M
Sbjct: 225 L-DLIKEVHKVEGIERIRLGSLEPGIITEEFAKELSEMPKVCPHFHLSLQSGCDATLKRM 283

Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
           NR++T+ EY      +R      A+++D IVGFPGET+++F A+   VD++ + +   FK
Sbjct: 284 NRKYTSGEYYDRCQILRKYFDHPALTTDVIVGFPGETEEEFEASYAFVDRVDFYETHIFK 343

Query: 367 YSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG 426
           YS R GT  + M  Q+DE +K ER   +      ++ ++ D+ +G+ +EVL E+  + +G
Sbjct: 344 YSKREGTKAAVMDGQIDEKIKGERSARMIALGERKKKAYEDSFIGKEVEVLFEERAQIEG 403

Query: 427 KLV--GRSPWLQSVVLNSKNHNIGDIIKVRITD 457
           K V  G +     + L ++ +    I+KVRI +
Sbjct: 404 KAVMTGHTKEYMKIALETEKNISNCIVKVRIEN 436


>gi|49483824|ref|YP_041048.1| hypothetical protein SAR1653 [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|257425701|ref|ZP_05602125.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257428362|ref|ZP_05604760.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257430999|ref|ZP_05607379.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257433687|ref|ZP_05610045.1| RNA modification protein [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257436601|ref|ZP_05612645.1| RNA modification protein [Staphylococcus aureus subsp. aureus M876]
 gi|282904158|ref|ZP_06312046.1| Fe-S oxidoreductase [Staphylococcus aureus subsp. aureus C160]
 gi|282905985|ref|ZP_06313840.1| MiaB tRNA modifying enzyme [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282911214|ref|ZP_06319016.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           subsp. aureus WBG10049]
 gi|282914383|ref|ZP_06322169.1| Fe-S oxidoreductase [Staphylococcus aureus subsp. aureus M899]
 gi|282919352|ref|ZP_06327087.1| MiaB-like tRNA modifying enzyme [Staphylococcus aureus subsp.
           aureus C427]
 gi|282924677|ref|ZP_06332345.1| MiaB-like tRNA modifying enzyme [Staphylococcus aureus subsp.
           aureus C101]
 gi|293503457|ref|ZP_06667304.1| MiaB tRNA modifying enzyme [Staphylococcus aureus subsp. aureus
           58-424]
 gi|293510474|ref|ZP_06669180.1| MiaB-like tRNA modifying enzyme [Staphylococcus aureus subsp.
           aureus M809]
 gi|293531014|ref|ZP_06671696.1| Fe-S oxidoreductase [Staphylococcus aureus subsp. aureus M1015]
 gi|295428154|ref|ZP_06820786.1| MiaB-like tRNA modifying enzyme [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|297590880|ref|ZP_06949518.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           subsp. aureus MN8]
 gi|49241953|emb|CAG40648.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|257271395|gb|EEV03541.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257275203|gb|EEV06690.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257278429|gb|EEV09065.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257281780|gb|EEV11917.1| RNA modification protein [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257283952|gb|EEV14075.1| RNA modification protein [Staphylococcus aureus subsp. aureus M876]
 gi|282313512|gb|EFB43907.1| MiaB-like tRNA modifying enzyme [Staphylococcus aureus subsp.
           aureus C101]
 gi|282317162|gb|EFB47536.1| MiaB-like tRNA modifying enzyme [Staphylococcus aureus subsp.
           aureus C427]
 gi|282321564|gb|EFB51889.1| Fe-S oxidoreductase [Staphylococcus aureus subsp. aureus M899]
 gi|282324909|gb|EFB55219.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           subsp. aureus WBG10049]
 gi|282331277|gb|EFB60791.1| MiaB tRNA modifying enzyme [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282595776|gb|EFC00740.1| Fe-S oxidoreductase [Staphylococcus aureus subsp. aureus C160]
 gi|290920282|gb|EFD97348.1| Fe-S oxidoreductase [Staphylococcus aureus subsp. aureus M1015]
 gi|291095123|gb|EFE25388.1| MiaB tRNA modifying enzyme [Staphylococcus aureus subsp. aureus
           58-424]
 gi|291466838|gb|EFF09358.1| MiaB-like tRNA modifying enzyme [Staphylococcus aureus subsp.
           aureus M809]
 gi|295128512|gb|EFG58146.1| MiaB-like tRNA modifying enzyme [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|297575766|gb|EFH94482.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           subsp. aureus MN8]
 gi|312437955|gb|ADQ77026.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           subsp. aureus TCH60]
 gi|315195479|gb|EFU25866.1| hypothetical protein CGSSa00_07410 [Staphylococcus aureus subsp.
           aureus CGS00]
          Length = 448

 Score =  238 bits (606), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 146/431 (33%), Positives = 238/431 (55%), Gaps = 23/431 (5%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  +  +F    YERV+   +AD+ V+NTC +     +K    + R    
Sbjct: 8   TLGCKVNHYETEAIWQLFKEANYERVDFEANADVFVINTCTVTNTGDKKSRQIIRRA--- 64

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               I++  D ++ V GC AQ    EI+   P V+VVVG Q  ++L   ++  R  ++ +
Sbjct: 65  ----IRQNPDAVICVTGCYAQTSSAEIME-IPGVDVVVGTQDRHKLLGYIDEFRKERQPI 119

Query: 151 DTDYSV--EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           +   ++    K+E L   D  Y   R   A L IQEGC+ FCTFC++P+ RG+  SR   
Sbjct: 120 NGVGNIMKNRKYEEL---DVPYFTDR-TRASLKIQEGCNNFCTFCIIPWARGLMRSRDPE 175

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
           +VV++A +L+++G  EI L G +     G G D +    + LL  L  I GL R+R ++ 
Sbjct: 176 KVVEQATQLVNSGYKEIVLTGIHTG---GYGQDLKDYNLAQLLRDLETINGLERIRISSI 232

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
               ++D +I        ++ +LH+P+QSGSD +LK M R++T   + + + ++    PD
Sbjct: 233 EASQLTDEVIDVLERSTKVVRHLHIPLQSGSDTVLKRMRRKYTMDRFSERLTKLHKALPD 292

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           +A++SD IVGFPGET+++F+ T D + K  +++   F YSPR+GTP + M +Q+DE +K 
Sbjct: 293 LAVTSDVIVGFPGETEEEFQETYDFIVKHKFSELHVFPYSPRIGTPAARMDDQIDEEIKN 352

Query: 389 ER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445
           ER   L+ L  +L +   S  D     ++EV+ E+ G  +G LVG +     V       
Sbjct: 353 ERVHKLITLSNQLGKLYASKFDQ---DVLEVIPEEQGDTEGTLVGYADNYMKVQFEGDES 409

Query: 446 NIGDIIKVRIT 456
            IG I+KV+IT
Sbjct: 410 LIGQIVKVKIT 420


>gi|300871330|ref|YP_003786203.1| 2-methylthioadenine synthetase [Brachyspira pilosicoli 95/1000]
 gi|300689031|gb|ADK31702.1| 2-methylthioadenine synthetase [Brachyspira pilosicoli 95/1000]
          Length = 424

 Score =  237 bits (605), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 151/443 (34%), Positives = 238/443 (53%), Gaps = 30/443 (6%)

Query: 36  MNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRI 95
           MN  DS  + +    +G+ +  + ++AD I++NTC +R  A E+V+S   R++    +R 
Sbjct: 1   MNKADSNSLINSLMQEGFIQTENHENADNIIINTCSVRAHAEERVFS---RVKLFNANRK 57

Query: 96  KEGGDLLVVVAGCVAQAEGE--EILRRSPIVNVV--VGPQTYYRLPELLERARFGKRVVD 151
           K   D  +++ GC+AQ   E  E L    I +V   V    Y +  E+  R      + +
Sbjct: 58  KNKKDTKIIIMGCMAQTSKEHLESLGVDKIFDVYNEVNIIDYLKDEEVFVRKFNDNYIFN 117

Query: 152 TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVV 211
             Y  EDK  +               AF+ I  GC+ +CT+C+VP+TRG  ISR   +++
Sbjct: 118 KSYVDEDKPHK---------------AFIPITHGCNNWCTYCIVPHTRGKMISRKSGEIL 162

Query: 212 DEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI-----KGLVRLRYT 266
           DE ++LID G  EITLLGQNVN++ G  +D E   F++LLY + ++     K  V +R+ 
Sbjct: 163 DEVKRLIDEGAKEITLLGQNVNSY-GLDIDNE-INFTELLYKIDKVIDEKAKDKVWIRFL 220

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
           TSHP+D    L  A   L+ L  ++HLP QSGSDRIL  MNR++T  EY + +  +R   
Sbjct: 221 TSHPKDFDKELADAIWSLNSLCKHIHLPFQSGSDRILSLMNRKYTKEEYIKKVSFLREHA 280

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
            D  IS+D IVG+  ET+++++ T+DL++ IG+ +A+ +KYS R G+       Q D+  
Sbjct: 281 DDFPISTDIIVGYADETEEEYQETLDLLESIGFEEAYLYKYSEREGSIAYKKKVQYDKVA 340

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL-NSKNH 445
            A RL  +    RE         VG+   ++I+   K+    + R+   + V++   K  
Sbjct: 341 GARRLTQIVNFQRELAQKLLSKQVGKKAYIMIDDIAKDNMHYLCRTKENRIVLIKKEKEL 400

Query: 446 NIGDIIKVRITDVKISTLYGELV 468
           N+GDI    IT++K  TL G L+
Sbjct: 401 NMGDIYYCEITEIKNHTLIGNLI 423


>gi|32266773|ref|NP_860805.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Helicobacter
           hepaticus ATCC 51449]
 gi|32262825|gb|AAP77871.1| conserved hypothetical protein [Helicobacter hepaticus ATCC 51449]
          Length = 443

 Score =  237 bits (605), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 150/423 (35%), Positives = 227/423 (53%), Gaps = 24/423 (5%)

Query: 53  YERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQA 112
           Y   N +  ADLI++NTC +REK  +K++S +G     K +  K G      V GC A  
Sbjct: 11  YTLTNDIKQADLILINTCSVREKPEKKLFSEIGAFAKEKKAGAKIG------VCGCTASH 64

Query: 113 EGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNR 172
            GEEI++++P V+ V+G +   ++ ++LER +     V+ D   +D     +   G    
Sbjct: 65  LGEEIIKKAPSVDFVLGARNVSKITQVLERPK----AVEVDIDYDDSTYVFASSQG---- 116

Query: 173 KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNV 232
             G+ A L I  GCDK C++C+VP+TRG EIS     ++ EA+K + +G  E+ LLGQNV
Sbjct: 117 -MGIKAHLNISIGCDKKCSYCIVPFTRGKEISVPKDLLISEAKKCVASGAKELLLLGQNV 175

Query: 233 NAWRGK-GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL 291
           N +  +      K  F+ LL +LSEI GL R+R+T+ HP  M D  ++      V+   +
Sbjct: 176 NNYGVRFSHSHPKTNFTQLLRALSEIDGLYRIRFTSPHPLHMDDEFLEEFASNPVIAKGI 235

Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351
           H+P+QSGS +ILK M R +    Y   I +++S+ P++ I +D IVGFP E++ DF  TM
Sbjct: 236 HIPLQSGSSQILKMMRRGYDKQWYLNRIAKLKSLVPNVGIGTDIIVGFPTESEQDFEDTM 295

Query: 352 DLVDKIGYAQAFSFKYSPRLGTPG----SNMLEQVDENVKAERLLCLQKKLREQQVSFND 407
           +++  + +   +SF YSPR  T       +ML  V   V  ERL  LQ   +E       
Sbjct: 296 EVLSLVEFDTLYSFVYSPRPHTSAFEYDKSML--VSPEVAKERLARLQNLHKEILSKKAQ 353

Query: 408 ACVGQIIEVLIEKHGKEKGKLV--GRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYG 465
             +G+I  VLIE H   +G+    GRS   + + +  K   IG I+KV IT  +   L G
Sbjct: 354 LEIGRIHNVLIENHYNGEGQCWSEGRSSSNKLIKILDKKCEIGSIVKVEITHNEGGGLMG 413

Query: 466 ELV 468
             +
Sbjct: 414 RFI 416


>gi|329725446|gb|EGG61929.1| tRNA methylthiotransferase YqeV [Staphylococcus epidermidis VCU144]
          Length = 448

 Score =  237 bits (605), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 141/431 (32%), Positives = 243/431 (56%), Gaps = 25/431 (5%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  +  +F    YERV    +AD+ V+NTC +     +K    + R    
Sbjct: 8   TLGCKVNHYETEAIWQLFKDANYERVEFETNADVFVINTCTVTNTGDKKSRQIIRRA--- 64

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               I++  D +V V GC AQ    EI+   P V++VVG Q  ++L + +++ +  ++ +
Sbjct: 65  ----IRQNPDAVVCVTGCYAQTSSAEIME-IPGVDIVVGTQDRHKLLDYIQQFQDERQPI 119

Query: 151 DTDYSV--EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           +   ++     +E L +    Y   R   + L IQEGC+ FCTFC++P+ RG+  SR   
Sbjct: 120 NGVGNIMKNRTYEELEV---PYFTDRTRDS-LKIQEGCNNFCTFCIIPWARGLMRSRDPE 175

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
           +VV++A +L+++G  EI L G +     G G D +    + LL  L  I+GL R+R ++ 
Sbjct: 176 KVVEQATQLVNSGYKEIVLTGIHTG---GYGQDLKNYNLAQLLRDLDTIEGLERIRISSI 232

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
               ++D +I   G+ + ++ +LH+P+QSGSD +LK M R++T   + + + ++    PD
Sbjct: 233 EASQLTDEVIDVIGNSNKVVRHLHIPLQSGSDDVLKRMRRKYTMAHFSERLTKLHQALPD 292

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE---N 385
           +A++SD IVGFPGE++D+F+ T D +    +++   F YSPR+GTP + M  Q+DE   N
Sbjct: 293 LAVTSDVIVGFPGESEDEFQETYDFIVNHHFSELHVFPYSPRIGTPAARMDNQIDEETKN 352

Query: 386 VKAERLLCLQKKLREQQVS-FNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
           V+  +L+ L  +L ++  S F D    +++EV+ E+ G+E   LVG +     V     +
Sbjct: 353 VRVHKLISLSNQLAKEYASKFED----EVLEVIPEEMGEEPHTLVGYADNYMKVRFEGDD 408

Query: 445 HNIGDIIKVRI 455
             IG I+KV+I
Sbjct: 409 SLIGQIVKVKI 419


>gi|309362075|emb|CAP28750.2| hypothetical protein CBG_09036 [Caenorhabditis briggsae AF16]
          Length = 1062

 Score =  237 bits (605), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 142/401 (35%), Positives = 217/401 (54%), Gaps = 28/401 (6%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           +YGCQMNV D   +  +    G+      + AD+++L TC IR+ A +KV++ L  IR+ 
Sbjct: 601 TYGCQMNVSDMEIVRSIMTQYGFVESEKKEKADVVLLMTCSIRDGAEKKVWNHLKLIRS- 659

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
            NS  K     +V V GC+A+    ++L +  +VN+V GP +Y  LP L+  A  G   +
Sbjct: 660 -NSVNKSQ---IVGVLGCMAERVRHDLLAKRNLVNIVAGPDSYRDLPRLVAIAAGGSNAI 715

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
           +   S+++ +  +  +      K   TAF++I  GCD  CT+CVVP+TRG E SR +  +
Sbjct: 716 NVQLSLDETYADVQPIRVDAATK---TAFISIMRGCDNMCTYCVVPFTRGRERSRPIESI 772

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC-------------------TFSDLL 251
           V+E R+L D+G  +ITLLGQNVN++R   +                        TF+ LL
Sbjct: 773 VEEVRRLRDDGYKQITLLGQNVNSYRDLTISPSTSSEDRVPGFKTVYKPKTGGLTFTSLL 832

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
             +++    VR R+T+ HP+D    LI+       L   LHLP QSG D  L+ M R +T
Sbjct: 833 EQVADAAPEVRFRFTSPHPKDFPMQLIELIASRPNLCKQLHLPAQSGDDDTLERMGRGYT 892

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
              Y +++D IR + P++ ++SDFI GF GET+   + T+ L+ ++GY+  F F YS R 
Sbjct: 893 RDLYLRLVDDIRKILPNVFLTSDFIAGFCGETEQAHQMTLSLIRQVGYSFCFVFPYSMRG 952

Query: 372 GTPGSNML-EQVDENVKAERLLCLQKKLREQQVSFNDACVG 411
            T   + L + V E VKA+R L L    RE+ +  N   +G
Sbjct: 953 KTRAHHRLADDVPEEVKAQRHLDLTTVFREEALKLNQTLIG 993


>gi|167462198|ref|ZP_02327287.1| RNA modification enzyme, MiaB family protein [Paenibacillus larvae
           subsp. larvae BRL-230010]
          Length = 449

 Score =  237 bits (605), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 142/443 (32%), Positives = 242/443 (54%), Gaps = 20/443 (4%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N YD+  +  +F ++GYE+ +    AD+ V+NTC +     +K    + R    
Sbjct: 8   TLGCKVNFYDTEAIWQLFKAEGYEQTDFEKTADVYVINTCTVTNTGDKKSRQMIRRA--- 64

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               ++   D ++ V GC AQ    EI+   P V++V+G Q   ++   +++    ++ +
Sbjct: 65  ----VRRNPDAIIAVTGCYAQTSPAEIME-IPGVDLVIGTQDREKIVPYVKQIESERQPI 119

Query: 151 DTDYSV--EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           +   ++    +FE L + D   +R R   AFL IQEGC+ FCTFC++P++RG+  SR   
Sbjct: 120 NAVRNIMKTRQFEELDVPDFA-DRTR---AFLKIQEGCNNFCTFCIIPWSRGLMRSRDPK 175

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
            VV +A  L+D G  EI L G +     G G D E  + + LL+ L ++ GL R+R ++ 
Sbjct: 176 SVVQQAHMLVDAGYKEIVLTGIHTG---GYGEDMEDYSLAKLLWDLDKVDGLERIRISSI 232

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
               ++D +++     D +  +LH+P+Q+G DR+LK M R++T  EY + I+ I    P 
Sbjct: 233 EASQITDEVLEVLNASDKMCRHLHIPLQAGDDRVLKRMRRKYTTEEYGRKIELIHKAMPG 292

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           +AI++D IVGFPGET++ F  +   ++++ Y++   F YS R GTP + M +Q+DE +K 
Sbjct: 293 VAITTDVIVGFPGETEEMFENSYRFMEQMKYSEMHVFPYSKRTGTPAARMEDQIDEEIKN 352

Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKH--GKE-KGKLVGRSPWLQSVVLNSKNH 445
            R+  L       Q+ +     GQ +EV+ E+   G E  G ++G S     +V      
Sbjct: 353 ARVHRLIDLSERMQLDYARQHEGQALEVIPEREYKGAEGSGLVMGYSDNYIQLVFEGSEQ 412

Query: 446 NIGDIIKVRITDVKISTLYGELV 468
            IG I +V++T+  I+   G+LV
Sbjct: 413 LIGQICRVKLTEPGINESRGQLV 435


>gi|317501694|ref|ZP_07959885.1| MiaB family RNA modification enzyme [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|331088421|ref|ZP_08337336.1| MiaB-like tRNA modifying enzyme [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|316896945|gb|EFV19025.1| MiaB family RNA modification enzyme [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|330408188|gb|EGG87676.1| MiaB-like tRNA modifying enzyme [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 431

 Score =  237 bits (605), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 142/433 (32%), Positives = 241/433 (55%), Gaps = 25/433 (5%)

Query: 33  GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92
           GC++N Y++  M++M    GYE V   + AD+ ++NTC +   A  K    L R R L  
Sbjct: 10  GCKVNAYETEAMQEMLEQAGYEIVPFKEGADVYIINTCTVTNIADRKSRQMLHRARKL-- 67

Query: 93  SRIKEGGDLLVVVAGCVAQA-EGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVD 151
                  D +VV AGC  QA EG+EI    P +++V+G      LPELL++    K    
Sbjct: 68  -----NPDAVVVAAGCYVQAQEGKEI---DPCIDIVIGNNHKKDLPELLKQYEMEKSG-H 118

Query: 152 TDYSVED-----KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           T+Y++ED     ++E L +   G + +    A++ +Q+GC++FCT+C++PY RG   SR 
Sbjct: 119 TEYAMEDINRTKEYEELHLTKPGDHTR----AYIKVQDGCNQFCTYCIIPYARGRVRSRQ 174

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
              V++E R L  NG  E+ L G +++++ G   DG++    DL+  + +++G+ R+R  
Sbjct: 175 TKDVLEEVRDLAGNGYKEVVLTGIHLSSY-GIDFDGQR-HLLDLIKEVHKVEGIERIRLG 232

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
           +  P  +++   K   ++  + P+ HL +QSG D  LK MNR++T+ EY      +R   
Sbjct: 233 SLEPGIITEEFAKELSEMPKVCPHFHLSLQSGCDATLKRMNRKYTSGEYYDRCQILRKYF 292

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
              A+++D IVGFPGET+++F A+   VD++ + +   FKYS R GT  + M  Q+DE +
Sbjct: 293 DHPALTTDVIVGFPGETEEEFEASYAFVDRVDFYETHIFKYSKREGTKAAVMDGQIDEKI 352

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV--GRSPWLQSVVLNSKN 444
           K ER   +      ++ ++ D+ +G+ +EVL E+  + +GK V  G +     + L ++ 
Sbjct: 353 KGERSARMIALGERKKKAYEDSFIGKEVEVLFEERAQIEGKAVMTGHTKEYMKIALETEK 412

Query: 445 HNIGDIIKVRITD 457
           +    I+KVRI +
Sbjct: 413 NISNCIVKVRIEN 425


>gi|310659093|ref|YP_003936814.1| hypothetical protein CLOST_1789 [Clostridium sticklandii DSM 519]
 gi|308825871|emb|CBH21909.1| conserved protein of unknown function [Clostridium sticklandii]
          Length = 454

 Score =  237 bits (605), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 143/443 (32%), Positives = 241/443 (54%), Gaps = 20/443 (4%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           FF  + GC++N Y++  ME +F   GYE  +    AD+ V+NTC +   + +K    + R
Sbjct: 27  FF--TLGCKVNQYETDAMEHLFRDAGYEVTDFESFADVYVINTCTVTSMSDKKSRQMIRR 84

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
            +       K   + ++ V GC +Q   +E++     VN+V+G     ++   +E+    
Sbjct: 85  AK-------KHNENAIIAVVGCYSQKSPDEVIAIEG-VNLVMGTSDRNKIVTEVEKLDVK 136

Query: 147 KRVVDTDYSVEDK-FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
             VV+ +  ++ + FE LSI +  Y + R   AFL IQEGCD+FC++C++PYTRG   SR
Sbjct: 137 DHVVEVEDIMKQRVFEALSI-EETYGKTR---AFLKIQEGCDRFCSYCIIPYTRGPVRSR 192

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           S++ ++ E + L  NG  E+ L G +V ++   G D       D++ +++ I G+ R+R 
Sbjct: 193 SINDIISEVKSLAKNGYKEVVLTGIHVASY---GKDLGDIRLIDVIKAINNIDGIHRIRT 249

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
           ++  P  ++D  +    ++D   P+ HL +QSGSD +L+ MNRR+   EY+  +D+IR +
Sbjct: 250 SSVEPLIITDDFLSELKEIDKFCPHFHLSLQSGSDSVLERMNRRYDKAEYKSAVDKIRKI 309

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            PD AI++D IVGFPGE+D +F  T   ++ I   +   FK+SPR GT  + M  QV   
Sbjct: 310 YPDAAITTDIIVGFPGESDAEFEETRAYLEDINLYEMHIFKFSPREGTKAAAMDNQVKPE 369

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445
           +K  R   L +  ++ ++ F    VG+  EVL E    E G   G +     V + S   
Sbjct: 370 IKNHRSEVLIELAKKNKLEFEKKLVGKEAEVLFE--SSENGIYEGHTTNYVKVYVQSDLD 427

Query: 446 NIGDIIKVRITDVKISTLYGELV 468
            IG+I +V I  ++   ++G+++
Sbjct: 428 LIGEIARVNIDRLENKKIFGKII 450


>gi|322383639|ref|ZP_08057390.1| ribosomal protein S12 methylthiotransferase-like protein
           [Paenibacillus larvae subsp. larvae B-3650]
 gi|321151851|gb|EFX44794.1| ribosomal protein S12 methylthiotransferase-like protein
           [Paenibacillus larvae subsp. larvae B-3650]
          Length = 446

 Score =  237 bits (605), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 141/443 (31%), Positives = 241/443 (54%), Gaps = 20/443 (4%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N YD+  +  +F ++GYE+ +    AD+ V+NTC +     +K    + R    
Sbjct: 5   TLGCKVNFYDTEAIWQLFKAEGYEQTDFEKTADVYVINTCTVTNTGDKKSRQMIRRA--- 61

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               ++   D ++ V GC AQ    EI+   P V++V+G Q   ++   +++    ++ +
Sbjct: 62  ----VRRNPDAIIAVTGCYAQTSPAEIME-IPGVDLVIGTQDREKIVPYVKQIESERQPI 116

Query: 151 DTDYSV--EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           +   ++    +FE L + D   +R R   AFL IQEGC+ FCTFC++P++RG+  SR   
Sbjct: 117 NAVRNIMKTRQFEELDVPDFA-DRTR---AFLKIQEGCNNFCTFCIIPWSRGLMRSRDPK 172

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
            VV +A  L+D G  EI L G +     G G D E  + + LL+ L ++ GL R+R ++ 
Sbjct: 173 SVVQQAHMLVDAGYKEIVLTGIHTG---GYGEDMEDYSLAKLLWDLDKVDGLERIRISSI 229

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
               ++D +++     D +  +LH+P+Q+G DR+LK M R++T  EY + I+ I    P 
Sbjct: 230 EASQITDEVLEVLNASDKMCRHLHIPLQAGDDRVLKRMRRKYTTEEYGRKIELIHKAMPG 289

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           +AI++D IVGFPGET++ F  +   ++++ Y++   F YS R GTP + M +Q+DE +K 
Sbjct: 290 VAITTDVIVGFPGETEEMFENSYRFMEQMKYSEMHVFPYSKRTGTPAARMEDQIDEEIKN 349

Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIE---KHGKEKGKLVGRSPWLQSVVLNSKNH 445
            R+  L       Q+ +     GQ +EV+ E   K  +  G ++G S     +V      
Sbjct: 350 ARVHRLIDLSERMQLDYARQHEGQALEVIPEREYKGAEGSGLVMGYSDNYIQLVFEGSEQ 409

Query: 446 NIGDIIKVRITDVKISTLYGELV 468
            IG I +V++T+  I+   G+LV
Sbjct: 410 LIGQICRVKLTEPGINESRGQLV 432


>gi|239637612|ref|ZP_04678584.1| conserved hypothetical protein [Staphylococcus warneri L37603]
 gi|239596830|gb|EEQ79355.1| conserved hypothetical protein [Staphylococcus warneri L37603]
          Length = 448

 Score =  237 bits (604), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 146/443 (32%), Positives = 242/443 (54%), Gaps = 23/443 (5%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  +  +F    YERV+   +AD+ V+NTC +     +K    + R    
Sbjct: 8   TLGCKVNHYETEAIWQLFKEADYERVDFETNADVFVINTCTVTNTGDKKSRQIIRRA--- 64

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               I++  D +V V GC AQ    EI+   P V+VVVG Q  ++L + ++  +  ++ +
Sbjct: 65  ----IRKNPDAVVCVTGCYAQTSSAEIME-IPGVDVVVGTQDRHKLLDYIDEFQKERQPI 119

Query: 151 DTDYSV--EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           +   ++    K+E L   D  Y   R   A L IQEGC+ FCTFC++P+ RG+  SR   
Sbjct: 120 NGVGNIMKNRKYEEL---DVPYFTDR-TRASLKIQEGCNNFCTFCIIPWARGLMRSRDPE 175

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
           +VV++A  L++ G  EI L G +     G G D +    + LL  L ++ GL R+R ++ 
Sbjct: 176 KVVEQATTLVNAGYKEIVLTGIHTG---GYGQDLKNYNLAQLLRDLDQVDGLERIRISSI 232

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
               ++D +I      + ++ +LH+P+QSGSD +LK M R++T   + + I ++    PD
Sbjct: 233 EASQLTDEVIDVLERSNKIVRHLHVPLQSGSDTVLKRMRRKYTMEHFSERITKLHEALPD 292

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           +AI+SD IVGFPGET+++F+ T D + K  +++   F YS R+GTP + M  Q+DE++K 
Sbjct: 293 VAITSDVIVGFPGETEEEFQETYDFIVKHQFSELHVFPYSSRIGTPAARMDNQIDEDIKN 352

Query: 389 ER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445
           ER   L+ L  +L ++  S       +++EV+ E+ G++   LVG +     V       
Sbjct: 353 ERVHKLIALSDQLAKEYAS---KFENEVLEVIPEEKGEKPNTLVGYADNYMKVEFEGTED 409

Query: 446 NIGDIIKVRITDVKISTLYGELV 468
            IG IIKV+I        YG+ +
Sbjct: 410 LIGQIIKVKIQKADYPLNYGKAI 432


>gi|282908895|ref|ZP_06316713.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           subsp. aureus WW2703/97]
 gi|283958340|ref|ZP_06375791.1| Fe-S oxidoreductase [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|282327159|gb|EFB57454.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           subsp. aureus WW2703/97]
 gi|283790489|gb|EFC29306.1| Fe-S oxidoreductase [Staphylococcus aureus subsp. aureus
           A017934/97]
          Length = 448

 Score =  237 bits (604), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 146/431 (33%), Positives = 238/431 (55%), Gaps = 23/431 (5%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  +  +F    YERV+   +AD+ V+NTC +     +K    + R    
Sbjct: 8   TLGCKVNHYETEAIWQLFKEANYERVDFEANADVFVINTCTVTNTGDKKSRQIIRRA--- 64

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               I++  D ++ V GC AQ    EI+   P V+VVVG Q  ++L   ++  R  ++ +
Sbjct: 65  ----IRQNPDAVICVTGCYAQTSSAEIMG-IPGVDVVVGTQDRHKLLGYIDEFRKERQPI 119

Query: 151 DTDYSV--EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           +   ++    K+E L   D  Y   R   A L IQEGC+ FCTFC++P+ RG+  SR   
Sbjct: 120 NGVGNIMKNRKYEEL---DVPYFTDR-TRASLKIQEGCNNFCTFCIIPWARGLMRSRDPE 175

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
           +VV++A +L+++G  EI L G +     G G D +    + LL  L  I GL R+R ++ 
Sbjct: 176 KVVEQATQLVNSGYKEIVLTGIHTG---GYGQDLKDYNLAQLLRDLETINGLERIRISSI 232

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
               ++D +I        ++ +LH+P+QSGSD +LK M R++T   + + + ++    PD
Sbjct: 233 EASQLTDEVIDVLERSTKVVRHLHIPLQSGSDTVLKRMRRKYTMDRFSERLTKLHKALPD 292

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           +A++SD IVGFPGET+++F+ T D + K  +++   F YSPR+GTP + M +Q+DE +K 
Sbjct: 293 LAVTSDVIVGFPGETEEEFQETYDFIVKHKFSELHVFPYSPRIGTPAARMDDQIDEEIKN 352

Query: 389 ER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445
           ER   L+ L  +L +   S  D     ++EV+ E+ G  +G LVG +     V       
Sbjct: 353 ERVHKLITLSNQLGKLYASKFDQ---DVLEVIPEEQGDTEGTLVGYADNYMKVQFEGDES 409

Query: 446 NIGDIIKVRIT 456
            IG I+KV+IT
Sbjct: 410 LIGQIVKVKIT 420


>gi|282916846|ref|ZP_06324604.1| MiaB-like tRNA modifying enzyme [Staphylococcus aureus subsp.
           aureus D139]
 gi|283770652|ref|ZP_06343544.1| 2-alkenal reductase [Staphylococcus aureus subsp. aureus H19]
 gi|282319333|gb|EFB49685.1| MiaB-like tRNA modifying enzyme [Staphylococcus aureus subsp.
           aureus D139]
 gi|283460799|gb|EFC07889.1| 2-alkenal reductase [Staphylococcus aureus subsp. aureus H19]
          Length = 448

 Score =  236 bits (603), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 147/443 (33%), Positives = 240/443 (54%), Gaps = 23/443 (5%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  +  +F    YERV+   +AD+ V+NTC +     +K    + R    
Sbjct: 8   TLGCKVNHYETEAIWQLFKEANYERVDFEANADVFVINTCTVTNTGDKKSRQIIRRA--- 64

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               I++  D ++ V GC AQ    EI+   P V+VVVG Q  ++L   ++  R  ++ +
Sbjct: 65  ----IRQNPDAVICVTGCYAQTSSAEIME-IPGVDVVVGTQDRHKLLGYIDEFRKERQPI 119

Query: 151 DTDYSV--EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           +   ++    K+E L   D  Y   R   A L IQEGC+ FCTFC++P+ RG+  SR   
Sbjct: 120 NGVGNIMKNRKYEEL---DVPYFTDR-TRASLKIQEGCNNFCTFCIIPWARGLMRSRDPE 175

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
           +VV++A +L+++G  EI L G +     G G D +    + LL  L  I GL R+R ++ 
Sbjct: 176 KVVEQATQLVNSGYKEIVLTGIHTG---GYGQDLKDYNLAQLLRDLETINGLERIRISSI 232

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
               ++D +I        ++ +LH+P+QSGSD +LK M R++T   + + + ++    PD
Sbjct: 233 EASQLTDEVIDVLERSTKVVRHLHIPLQSGSDTVLKRMRRKYTMDRFSERLTKLHKALPD 292

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           +A++SD IVGFPGET+ +F+ T D + K  +++   F YSPR+GTP + M +Q+DE +K 
Sbjct: 293 LAVTSDVIVGFPGETEAEFQETYDFIVKHKFSELHVFPYSPRIGTPAARMDDQIDEEIKN 352

Query: 389 ER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445
           ER   L+ L  +L +   S  D     ++EV+ E+ G  +G LVG +     V       
Sbjct: 353 ERVHKLITLSNQLGKLYASKFDQ---DVLEVIPEEQGDREGTLVGYADNYMKVQFEGDES 409

Query: 446 NIGDIIKVRITDVKISTLYGELV 468
            IG I+KV+IT        G+ +
Sbjct: 410 LIGQIVKVKITQANYPLNEGQAI 432


>gi|260892512|ref|YP_003238609.1| RNA modification enzyme, MiaB family [Ammonifex degensii KC4]
 gi|260864653|gb|ACX51759.1| RNA modification enzyme, MiaB family [Ammonifex degensii KC4]
          Length = 437

 Score =  236 bits (603), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 156/444 (35%), Positives = 234/444 (52%), Gaps = 17/444 (3%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P R    + GC++N  D+  M  +F  +GY+ V+  + AD+ V+NTC +   AA+K    
Sbjct: 9   PLRVAFYTLGCKVNQCDTAEMAALFAQRGYQIVDFEEPADVYVVNTCVVTHTAAQKSRQA 68

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           + R    +N R       LVVV GC AQ +  E++   P V VV G      LP+L+E A
Sbjct: 69  IRRAWR-RNPRS------LVVVTGCYAQLD-PELISSLPGVRVVAGTGAKKELPDLVEEA 120

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           R   R +     +   FE L     G  R     AFL +QEGC  FCT+C+VPY RG   
Sbjct: 121 RCSGRQLVAVKDIPSSFEDLPAYFFGRTR-----AFLKVQEGCRDFCTYCIVPYVRGPCR 175

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR L  V+  AR+ +  G  E+ L G ++  + G+ L     T + L+  L E   L RL
Sbjct: 176 SRPLEAVLKAARRFLQEGFVELVLTGTHLGLY-GQDLT-PSLTLAHLVERLLEFPELKRL 233

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R ++  P +++  LI+         P+LH+P+QSG D IL+ M RR+T  +YR+++ R+R
Sbjct: 234 RLSSIEPLEVTADLIELMRRDSRFCPHLHIPLQSGDDEILRRMGRRYTTAQYRELVARLR 293

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              PDIAI++D +VGFPGET++ F  T  L+ ++  A    F YSPR GTP +    +V 
Sbjct: 294 EAVPDIAITTDVMVGFPGETEEAFARTERLLRELELAGMHVFPYSPRPGTPAARFPGRVP 353

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
                 RL  L     E +  +    +G+ +EVL+EK  +++G  +G SP    V++   
Sbjct: 354 WPEVERRLERLLLLRDELRQRYAQRFLGRDVEVLLEKVEEKQG--LGLSPHYLPVIVFGS 411

Query: 444 NHNIGDIIKVRITDVKISTLYGEL 467
             + G +++VR+  V   TLYG L
Sbjct: 412 LLSPGKLVQVRVERVAEGTLYGHL 435


>gi|21283257|ref|NP_646345.1| hypothetical protein MW1528 [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49486411|ref|YP_043632.1| hypothetical protein SAS1514 [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|57651969|ref|YP_186473.1| hypothetical protein SACOL1633 [Staphylococcus aureus subsp. aureus
           COL]
 gi|87160469|ref|YP_494231.1| hypothetical protein SAUSA300_1536 [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|88195385|ref|YP_500189.1| hypothetical protein SAOUHSC_01679 [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|148268060|ref|YP_001247003.1| RNA modification protein [Staphylococcus aureus subsp. aureus JH9]
 gi|150394128|ref|YP_001316803.1| RNA modification protein [Staphylococcus aureus subsp. aureus JH1]
 gi|151221691|ref|YP_001332513.1| hypothetical protein NWMN_1479 [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|161509804|ref|YP_001575463.1| hypothetical protein USA300HOU_1577 [Staphylococcus aureus subsp.
           aureus USA300_TCH1516]
 gi|253316051|ref|ZP_04839264.1| hypothetical protein SauraC_07882 [Staphylococcus aureus subsp.
           aureus str. CF-Marseille]
 gi|253732229|ref|ZP_04866394.1| 2-methylthioadenine synthase [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253733173|ref|ZP_04867338.1| 2-methylthioadenine synthase [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|257793652|ref|ZP_05642631.1| MiaB-like tRNA modifying enzyme [Staphylococcus aureus A9781]
 gi|258411048|ref|ZP_05681328.1| RNA modification protein [Staphylococcus aureus A9763]
 gi|258420148|ref|ZP_05683103.1| MiaB-like tRNA modifying enzyme [Staphylococcus aureus A9719]
 gi|258437408|ref|ZP_05689392.1| RNA modification protein [Staphylococcus aureus A9299]
 gi|258443614|ref|ZP_05691953.1| conserved hypothetical protein [Staphylococcus aureus A8115]
 gi|258446821|ref|ZP_05694975.1| RNA modification protein [Staphylococcus aureus A6300]
 gi|258448735|ref|ZP_05696847.1| RNA modification protein [Staphylococcus aureus A6224]
 gi|258450595|ref|ZP_05698657.1| MiaB-like tRNA modifying enzyme [Staphylococcus aureus A5948]
 gi|258453552|ref|ZP_05701530.1| MiaB-like tRNA modifying enzyme [Staphylococcus aureus A5937]
 gi|262049149|ref|ZP_06022026.1| hypothetical protein SAD30_0306 [Staphylococcus aureus D30]
 gi|262051236|ref|ZP_06023460.1| hypothetical protein SA930_1667 [Staphylococcus aureus 930918-3]
 gi|269203204|ref|YP_003282473.1| hypothetical protein SAAV_1568 [Staphylococcus aureus subsp. aureus
           ED98]
 gi|282893077|ref|ZP_06301311.1| MiaB tRNA modifying enzyme [Staphylococcus aureus A8117]
 gi|282920125|ref|ZP_06327850.1| MiaB-like tRNA modifying enzyme [Staphylococcus aureus A9765]
 gi|282928209|ref|ZP_06335814.1| MiaB-like tRNA modifying enzyme [Staphylococcus aureus A10102]
 gi|284024635|ref|ZP_06379033.1| hypothetical protein Saura13_08590 [Staphylococcus aureus subsp.
           aureus 132]
 gi|294848607|ref|ZP_06789353.1| MiaB-like tRNA modifying enzyme [Staphylococcus aureus A9754]
 gi|295406699|ref|ZP_06816504.1| MiaB-like tRNA modifying enzyme [Staphylococcus aureus A8819]
 gi|296275802|ref|ZP_06858309.1| hypothetical protein SauraMR_05622 [Staphylococcus aureus subsp.
           aureus MR1]
 gi|297207705|ref|ZP_06924140.1| Fe-S oxidoreductase [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|297245719|ref|ZP_06929584.1| MiaB-like tRNA modifying enzyme [Staphylococcus aureus A8796]
 gi|300911786|ref|ZP_07129229.1| Fe-S oxidoreductase [Staphylococcus aureus subsp. aureus TCH70]
 gi|304380835|ref|ZP_07363495.1| Fe-S oxidoreductase [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|21204697|dbj|BAB95393.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49244854|emb|CAG43315.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|57286155|gb|AAW38249.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           COL]
 gi|87126443|gb|ABD20957.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87202943|gb|ABD30753.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|147741129|gb|ABQ49427.1| RNA modification enzyme, MiaB family [Staphylococcus aureus subsp.
           aureus JH9]
 gi|149946580|gb|ABR52516.1| RNA modification enzyme, MiaB family [Staphylococcus aureus subsp.
           aureus JH1]
 gi|150374491|dbj|BAF67751.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|160368613|gb|ABX29584.1| possible 2-methylthioadenine synthase [Staphylococcus aureus subsp.
           aureus USA300_TCH1516]
 gi|253724018|gb|EES92747.1| 2-methylthioadenine synthase [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253728713|gb|EES97442.1| 2-methylthioadenine synthase [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|257787624|gb|EEV25964.1| MiaB-like tRNA modifying enzyme [Staphylococcus aureus A9781]
 gi|257840198|gb|EEV64662.1| RNA modification protein [Staphylococcus aureus A9763]
 gi|257843859|gb|EEV68253.1| MiaB-like tRNA modifying enzyme [Staphylococcus aureus A9719]
 gi|257848613|gb|EEV72601.1| RNA modification protein [Staphylococcus aureus A9299]
 gi|257851020|gb|EEV74963.1| conserved hypothetical protein [Staphylococcus aureus A8115]
 gi|257854396|gb|EEV77345.1| RNA modification protein [Staphylococcus aureus A6300]
 gi|257858013|gb|EEV80902.1| RNA modification protein [Staphylococcus aureus A6224]
 gi|257861753|gb|EEV84552.1| MiaB-like tRNA modifying enzyme [Staphylococcus aureus A5948]
 gi|257864283|gb|EEV87033.1| MiaB-like tRNA modifying enzyme [Staphylococcus aureus A5937]
 gi|259160873|gb|EEW45893.1| hypothetical protein SA930_1667 [Staphylococcus aureus 930918-3]
 gi|259162818|gb|EEW47383.1| hypothetical protein SAD30_0306 [Staphylococcus aureus D30]
 gi|262075494|gb|ACY11467.1| hypothetical protein SAAV_1568 [Staphylococcus aureus subsp. aureus
           ED98]
 gi|269941066|emb|CBI49450.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           TW20]
 gi|282590016|gb|EFB95098.1| MiaB-like tRNA modifying enzyme [Staphylococcus aureus A10102]
 gi|282594473|gb|EFB99458.1| MiaB-like tRNA modifying enzyme [Staphylococcus aureus A9765]
 gi|282764395|gb|EFC04521.1| MiaB tRNA modifying enzyme [Staphylococcus aureus A8117]
 gi|283470855|emb|CAQ50066.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           ST398]
 gi|285817258|gb|ADC37745.1| MiaB family protein, possibly involved in tRNA or rRNA modification
           [Staphylococcus aureus 04-02981]
 gi|294824633|gb|EFG41056.1| MiaB-like tRNA modifying enzyme [Staphylococcus aureus A9754]
 gi|294968446|gb|EFG44470.1| MiaB-like tRNA modifying enzyme [Staphylococcus aureus A8819]
 gi|296887722|gb|EFH26620.1| Fe-S oxidoreductase [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|297177370|gb|EFH36622.1| MiaB-like tRNA modifying enzyme [Staphylococcus aureus A8796]
 gi|298694858|gb|ADI98080.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           ED133]
 gi|300886032|gb|EFK81234.1| Fe-S oxidoreductase [Staphylococcus aureus subsp. aureus TCH70]
 gi|304340562|gb|EFM06496.1| Fe-S oxidoreductase [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|312829964|emb|CBX34806.1| RNA modification enzyme, MiaB family protein [Staphylococcus aureus
           subsp. aureus ECT-R 2]
 gi|315129855|gb|EFT85845.1| possible 2-methylthioadenine synthase [Staphylococcus aureus subsp.
           aureus CGS03]
 gi|315198728|gb|EFU29056.1| possible 2-methylthioadenine synthase [Staphylococcus aureus subsp.
           aureus CGS01]
 gi|320140539|gb|EFW32393.1| MiaB-like tRNA modifying enzyme [Staphylococcus aureus subsp.
           aureus MRSA131]
 gi|320144076|gb|EFW35845.1| MiaB-like tRNA modifying enzyme [Staphylococcus aureus subsp.
           aureus MRSA177]
 gi|323440474|gb|EGA98186.1| hypothetical protein SAO11_0770 [Staphylococcus aureus O11]
 gi|323443248|gb|EGB00866.1| hypothetical protein SAO46_0897 [Staphylococcus aureus O46]
 gi|329727386|gb|EGG63842.1| tRNA methylthiotransferase YqeV [Staphylococcus aureus subsp.
           aureus 21172]
 gi|329728416|gb|EGG64853.1| tRNA methylthiotransferase YqeV [Staphylococcus aureus subsp.
           aureus 21189]
 gi|329733119|gb|EGG69456.1| tRNA methylthiotransferase YqeV [Staphylococcus aureus subsp.
           aureus 21193]
          Length = 448

 Score =  236 bits (603), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 146/431 (33%), Positives = 237/431 (54%), Gaps = 23/431 (5%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  +  +F    YERV+   +AD+ V+NTC +     +K    + R    
Sbjct: 8   TLGCKVNHYETEAIWQLFKEANYERVDFEANADVFVINTCTVTNTGDKKSRQIIRRA--- 64

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               I++  D ++ V GC AQ    EI+   P V+VVVG Q  ++L   ++  R  ++ +
Sbjct: 65  ----IRQNPDAVICVTGCYAQTSSAEIME-IPGVDVVVGTQDRHKLLGYIDEFRKERQPI 119

Query: 151 DTDYSV--EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           +   ++    K+E L   D  Y   R   A L IQEGC+ FCTFC++P+ RG+  SR   
Sbjct: 120 NGVGNIMKNRKYEEL---DVPYFTDR-TRASLKIQEGCNNFCTFCIIPWARGLMRSRDPE 175

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
           +VV++A +L+++G  EI L G +     G G D +    + LL  L  I GL R+R ++ 
Sbjct: 176 KVVEQATQLVNSGYKEIVLTGIHTG---GYGQDLKDYNLAQLLRDLETINGLERIRISSI 232

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
               ++D +I        ++ +LH+P+QSGSD +LK M R++T   + + + ++    PD
Sbjct: 233 EASQLTDEVIDVLERSTKVVRHLHIPLQSGSDTVLKRMRRKYTMDRFSERLTKLHKALPD 292

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           +A++SD IVGFPGET+ +F+ T D + K  +++   F YSPR+GTP + M +Q+DE +K 
Sbjct: 293 LAVTSDVIVGFPGETEAEFQETYDFIVKHKFSELHVFPYSPRIGTPAARMDDQIDEEIKN 352

Query: 389 ER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445
           ER   L+ L  +L +   S  D     ++EV+ E+ G  +G LVG +     V       
Sbjct: 353 ERVHKLITLSNQLGKLYASKFDQ---DVLEVIPEEQGDTEGTLVGYADNYMKVQFEGDES 409

Query: 446 NIGDIIKVRIT 456
            IG I+KV+IT
Sbjct: 410 LIGQIVKVKIT 420


>gi|253574631|ref|ZP_04851971.1| MiaB-like tRNA modifying enzyme [Paenibacillus sp. oral taxon 786
           str. D14]
 gi|251845677|gb|EES73685.1| MiaB-like tRNA modifying enzyme [Paenibacillus sp. oral taxon 786
           str. D14]
          Length = 447

 Score =  236 bits (603), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 141/444 (31%), Positives = 242/444 (54%), Gaps = 21/444 (4%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVN-SMDDADLIVLNTCHIREKAAEKVYSFLGRIRN 89
           + GC++N YD+  +  +F ++GYE+V+     AD+ ++NTC +     +K    + R   
Sbjct: 8   TLGCKVNFYDTEAIWQLFKNEGYEQVDFEQSAADVYLINTCTVTNTGDKKSRQIIRRA-- 65

Query: 90  LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149
                ++   D ++ V GC AQ    EIL   P V++V+G Q   ++   +++ +  ++ 
Sbjct: 66  -----VRRNPDAIIAVTGCYAQTSPAEILD-IPGVDLVIGTQDRDKIIPYVKQLQEQRKP 119

Query: 150 VDTDYSV--EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
           ++   ++    +FE L +     + +    A+L IQEGC+ FCTFC++P++RG+  SR  
Sbjct: 120 INAVRNIMKTREFEELDVPSFADHTR----AYLKIQEGCNNFCTFCIIPWSRGLSRSRDP 175

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
             V+ +AR+L+  G  EI L G +     G G D E    SDLL+ L +++GL R+R ++
Sbjct: 176 QSVIQQARQLVAAGYKEIVLTGIHTG---GYGDDLENYRLSDLLWDLDKVEGLGRIRISS 232

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
                + D ++    +   +  + H+P+Q+GS+ +LK M R++T  E+   I  IR   P
Sbjct: 233 IEASQIDDRMLDVLKNSSKMCRHFHIPLQAGSNEVLKRMRRKYTIEEFEHKIKMIRDFMP 292

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
           D+AI++D IVGFPGETD+ FR   + + +IG+++   F YS R GTP + M +QVDE VK
Sbjct: 293 DVAITTDVIVGFPGETDELFREGFEAIKRIGFSEMHVFPYSKRSGTPAARMEDQVDEEVK 352

Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK---GKLVGRSPWLQSVVLNSKN 444
             R+  L     + Q+++ +  VGQ+++V+ EK  K     G + G S     +      
Sbjct: 353 HARVHELIDLSEQMQLAYAEKFVGQVLDVIPEKDEKGTAGDGYVTGFSDNYLQIRFPGTP 412

Query: 445 HNIGDIIKVRITDVKISTLYGELV 468
              G I +V++T    +T  G+LV
Sbjct: 413 DLTGKICRVKLTQADANTCEGQLV 436


>gi|297260004|ref|XP_001103977.2| PREDICTED: CDK5 regulatory subunit-associated protein 1-like
           [Macaca mulatta]
          Length = 483

 Score =  236 bits (603), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 153/479 (31%), Positives = 254/479 (53%), Gaps = 51/479 (10%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ ++++YGCQMNV D+     +    GY R +++ +AD+I+L TC IREKA + +++ L
Sbjct: 9   RKVYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCSIREKAEQTIWNRL 68

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            +++ LK  R +    L + + GC+A+   EEIL R  +V+V+ GP  Y  LP LL  A 
Sbjct: 69  HQLKALKTRRPRSRVPLRIGILGCMAERLKEEILNREKMVDVLAGPDAYRDLPRLLAVAE 128

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G++  +   S+++ +  +  V    +     +AF++I  GCD  C++C+VP+TRG E S
Sbjct: 129 SGQQAANVLLSLDETYADVMPVQTNPS---ATSAFVSIMRGCDNMCSYCIVPFTRGRERS 185

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWR---------------GKGLDGE------ 243
           R ++ +++E +KL + G+ E+TLLGQNVN++R                +G          
Sbjct: 186 RPVASILEEVKKLSEQGLKEVTLLGQNVNSFRDNSEVQFNNAVSTNLSRGFTTNYKAKQG 245

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
              F+ LL  +S +   +R+R+T+ HP+D  D +++   + D +   +HLP QSGS R+L
Sbjct: 246 GLRFAHLLDQVSRVDPEMRIRFTSPHPKDFPDEVLQLIHERDNICKQIHLPAQSGSSRVL 305

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           ++M R             +RS+   +++SSDFI GF GET++D   T+ L+ ++ Y   F
Sbjct: 306 EAMRR-----------GVMRSL--GVSLSSDFIAGFCGETEEDHVQTVSLLREVQYNMGF 352

Query: 364 SFKYSPRLGTPGSNML-EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422
            F YS R  T   + L + V E VK  RL  L    RE+    N   VG    VL+E   
Sbjct: 353 LFAYSMRQKTRAYHRLKDDVPEEVKLRRLEELITVFREEATKANQISVGCTQLVLVEGLS 412

Query: 423 KEK-GKLVGRSPW-LQSVVLNSKNHNI-----------GDIIKVRITDVKISTLYGELV 468
           K     L GR+   L+ +  +++  ++           GD + V+IT     TL G ++
Sbjct: 413 KRSVTDLCGRNDGNLKVIFPDAEMEDVNNPGLRVRAQPGDYVLVKITSASSQTLRGHVL 471


>gi|298242300|ref|ZP_06966107.1| RNA modification enzyme, MiaB family [Ktedonobacter racemifer DSM
           44963]
 gi|297555354|gb|EFH89218.1| RNA modification enzyme, MiaB family [Ktedonobacter racemifer DSM
           44963]
          Length = 502

 Score =  236 bits (603), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 158/498 (31%), Positives = 256/498 (51%), Gaps = 68/498 (13%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           ++ + + GCQMN  DS R++ M    G+E  N MD A+L+VLNTC +R+   EK ++ L 
Sbjct: 10  KYHIWTVGCQMNQADSQRIQTMLEGMGWEEAN-MDQANLVVLNTCSVRKAPEEKAHNQLA 68

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCV--AQAEGEEILRRSPIVNVVVGPQTYYRLPELLER- 142
            ++  K  R     DLLV + GC+   Q   +E+ +R P +++ +  +    LP  LE  
Sbjct: 69  LLKYAKEKR----DDLLVALMGCMIGNQKTIDELSKRYPHIDLFMKVEQADILPRFLEER 124

Query: 143 --------------------------------------------ARFGKRVVDTDYSVED 158
                                                       +R GKR V        
Sbjct: 125 WTPISGAGCLDIEFMPNEEALSEQAQRLTTLPNEPQTPTFATSFSRSGKRTVLPMAITPK 184

Query: 159 KFERLSIVDGGYNRKRG-VTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKL 217
             ER++        K+   TA+L I  GC+K CT+C+VPY RG E SR + +++ EAR L
Sbjct: 185 PGERIAHYPTKIEPKKASPTAWLPIVLGCNKVCTYCIVPYRRGRERSRPIDELMIEARLL 244

Query: 218 IDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDC 276
           ++ G  E+TLLGQ + ++   GLD   +   +DL+ SLSEI GL R+R+ TS+PR M+D 
Sbjct: 245 VEKGAKEVTLLGQTIESY---GLDLANQPNLADLMTSLSEIDGLDRIRFMTSYPRYMTDS 301

Query: 277 LIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFI 336
           +I+    L  +  +L++PVQ+G +  LK M R ++  EY + IDR+R + P+I++S+D I
Sbjct: 302 MIERMASLPKVCEHLNIPVQAGHNDTLKRMKRGYSIEEYYEKIDRVRELWPNISLSTDVI 361

Query: 337 VGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQK 396
           VGF GETD++F+ T+D+++++ +       YS R GT  +   + +    K  RL  +++
Sbjct: 362 VGFCGETDEEFQTTLDMIERVRFDVVHVAAYSVRPGTVAARWEDDIPLVEKKRRLHAVEE 421

Query: 397 KLREQQVSFNDACVGQIIEVLIEK----HGKEKGKLVGRSPWLQSVVLNSKNH-----NI 447
              +  ++ N   + +I EVL+E+    HG+++ K  GR+   + V             I
Sbjct: 422 VQSKIALAINRQYLDKIEEVLVEESNETHGRQQWK--GRNRANKLVFFPQPEEGQQPIQI 479

Query: 448 GDIIKVRITDVKISTLYG 465
           GD++ VRI      +L G
Sbjct: 480 GDLVNVRIERTTPWSLQG 497


>gi|325971245|ref|YP_004247436.1| RNA modification enzyme, MiaB family [Spirochaeta sp. Buddy]
 gi|324026483|gb|ADY13242.1| RNA modification enzyme, MiaB family [Spirochaeta sp. Buddy]
          Length = 433

 Score =  236 bits (602), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 143/444 (32%), Positives = 238/444 (53%), Gaps = 30/444 (6%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           +++++YGCQMNV +S  +E      G    +  +DAD  +LNTC +R+ A  +++  LG 
Sbjct: 5   YWLETYGCQMNVAESNALELQLKGAGLVPASRAEDADCAILNTCTVRKSADNRIWGRLGY 64

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
                 + IK    L ++V GC+A+   E++   +P V+ V+G                 
Sbjct: 65  F-----TYIKSKHPLTLIVTGCMAERLQEDLKDEAPQVDYVIGTND-------------K 106

Query: 147 KRVVDTDYSVEDKFERLS---IVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           +R+V+   SV+ K +  S        Y ++   ++++ I  GC+ FC +C+VPY RG E+
Sbjct: 107 QRIVNILTSVDGKMDEHSQSYTFGNSYYQEGEFSSYIPIMNGCNNFCAYCIVPYVRGREV 166

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR- 262
           SR +  ++ E   L   GV E+TLLGQNVN++     DG    F  LL  L   K  ++ 
Sbjct: 167 SRPVDDILAELAFLDSKGVKEVTLLGQNVNSYHFVEADGRVINFPKLLKKLCSQKNHIKW 226

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+ + HP+D S  LI+   +   +  +LH+P+QSGS RIL  MNR+++  ++  +ID +
Sbjct: 227 IRFDSPHPKDFSQELIQVIQEEKQIARHLHIPLQSGSSRILSLMNRKYSRSQFLTLIDDL 286

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R   PDI  S+D +VGFP ET+++++ T  ++  +   +AF + Y+PR GT    M EQ+
Sbjct: 287 RRAIPDITFSTDVMVGFPSETEEEYQETRSVLAHMQCLEAFMYYYNPREGTKAVEMNEQI 346

Query: 383 DENVKAERLLCL---QKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSV 438
           DE  K  RL  L   Q  +  QQ       V  ++EVL+ +  K   K ++G++   + V
Sbjct: 347 DEEEKGRRLQSLIEFQHAIFAQQ---KQKRVQSVVEVLVTQVSKHDSKSMLGKTEHNEMV 403

Query: 439 VLNSKNHNIGDIIKVRITDVKIST 462
              S    +G+II V++T +  +T
Sbjct: 404 AFPS-TAKLGEIITVQLTSLNGNT 426


>gi|332975771|gb|EGK12652.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Desmospora sp. 8437]
          Length = 448

 Score =  236 bits (602), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 145/433 (33%), Positives = 233/433 (53%), Gaps = 26/433 (6%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  M  +F  QGYE+V+    AD+ V+NTC +      K    + R    
Sbjct: 8   TLGCKVNAYETEAMWKLFQRQGYEKVDFEQKADVYVINTCTVTNTGDRKSRQMIRRA--- 64

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               +++  + +V V GC AQ    EI+   P V+VVVG Q   +L + +E  R  ++ V
Sbjct: 65  ----VRKNPEAVVAVTGCYAQTSSAEIMD-IPGVDVVVGTQGRDKLLQYIEEHRQTRQPV 119

Query: 151 DTDYSV--EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           +   ++    +FE +  V     R R   A L IQEGC+ FCTFC++P+ RG+  SR   
Sbjct: 120 NAVKNIMKTREFEEMD-VPSFSERTR---ASLKIQEGCNNFCTFCIIPWARGLLRSRKPE 175

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
            V+ +AR+L+D G  EI L G +     G G D E    +DLL+ L +++GL R+R ++ 
Sbjct: 176 SVLRQARQLVDAGYKEIVLTGIHTG---GYGEDFEDYKLADLLWDLDKVEGLKRIRISSI 232

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
               + D +I      D +  +LH+P+Q+G D +LK M RR+T  EYR+ I+ +    P 
Sbjct: 233 EASQIDDRVIDVLNKSDKMCRHLHIPLQAGDDVVLKRMRRRYTVDEYRRKIEHLHRAMPG 292

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           +AI+SD IVGFPGET++ F     L++++G+++   F YS R GTP + M +QV   VK 
Sbjct: 293 VAITSDVIVGFPGETEEQFENGYRLIEELGFSELHVFPYSTRTGTPAARMTDQVPAEVKQ 352

Query: 389 E---RLLCLQKKLREQQVSFNDACVGQIIEVLIE---KHGKEKGKLVGRSPWLQSVVLNS 442
           +   RL+ L  +L    +++     G+++EV+ E   K   + G L G S     +    
Sbjct: 353 DRVARLIALSDRL---ALTYASKYAGEVLEVIPEGPLKDDPDSGWLAGYSDNYLQIAFPG 409

Query: 443 KNHNIGDIIKVRI 455
               +G + +VR+
Sbjct: 410 NEELVGQVCRVRL 422


>gi|82751179|ref|YP_416920.1| hypothetical protein SAB1448c [Staphylococcus aureus RF122]
 gi|82656710|emb|CAI81137.1| conserved hypothetical protein [Staphylococcus aureus RF122]
          Length = 448

 Score =  236 bits (602), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 146/431 (33%), Positives = 237/431 (54%), Gaps = 23/431 (5%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  +  +F    YERV+   +AD+ V+NTC +     +K    + R    
Sbjct: 8   TLGCKVNHYETEAIWQLFKEANYERVDFEANADVFVINTCTVTNTGDKKSRQIIRRA--- 64

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               I++  D ++ V GC AQ    EI+   P V+VVVG Q  ++L   ++  R  ++ +
Sbjct: 65  ----IRQNPDAVICVTGCYAQTSSAEIME-IPGVDVVVGTQDRHKLLGYIDEFRKERQPI 119

Query: 151 DTDYSV--EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           +   ++    K+E L   D  Y   R   A L IQEGC+ FCTFC++P+ RG+  SR   
Sbjct: 120 NGVGNIMKNRKYEEL---DVPYFTDR-TRASLKIQEGCNNFCTFCIIPWARGLMRSRDPE 175

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
           +VV++A +L+++G  EI L G +     G G D +    + LL  L  I GL R+R ++ 
Sbjct: 176 KVVEQATQLVNSGYKEIVLTGIHTG---GYGQDLKDYNLAQLLRDLEMINGLERIRISSI 232

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
               ++D +I        ++ +LH+P+QSGSD +LK M R++T   + + + ++    PD
Sbjct: 233 EASQLTDEVIDVLERSTKVVRHLHIPLQSGSDTVLKRMRRKYTMDRFSERLTKLHKALPD 292

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           +A++SD IVGFPGET+ +F+ T D + K  +++   F YSPR+GTP + M +Q+DE +K 
Sbjct: 293 LAVTSDVIVGFPGETEAEFQETYDFIVKHKFSELHVFPYSPRIGTPAARMDDQIDEEIKN 352

Query: 389 ER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445
           ER   L+ L  +L +   S  D     ++EV+ E+ G  +G LVG +     V       
Sbjct: 353 ERVHKLITLSNQLGKLYASKFDQ---DVLEVIPEEQGDTEGTLVGYADNYMKVQFEGDES 409

Query: 446 NIGDIIKVRIT 456
            IG I+KV+IT
Sbjct: 410 LIGQIVKVKIT 420


>gi|167533556|ref|XP_001748457.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163772976|gb|EDQ86621.1| predicted protein [Monosiga brevicollis MX1]
          Length = 1020

 Score =  236 bits (602), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 150/488 (30%), Positives = 256/488 (52%), Gaps = 44/488 (9%)

Query: 15  SQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIRE 74
           + I +Q ++ ++  +++YGCQMNV D+     +  + G  R ++ ++AD+ +L TC IRE
Sbjct: 107 APIDEQSLLGRKVHIEAYGCQMNVSDAEIAWSILKNAGCVRCDTAEEADVTLLVTCAIRE 166

Query: 75  KAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYY 134
            A  K++S L +++  K  R+    +  + V GC+A+    ++L +   +++V GP  Y 
Sbjct: 167 NAENKIWSRLNQLKAHKR-RLGRTRNFQIGVLGCMAERLKHKLLEQEKAIDLVAGPDAYR 225

Query: 135 RLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCV 194
            LP +L  +  G+  V+   S+++ +  ++ V    N      AF++IQ GC   C++C+
Sbjct: 226 DLPRMLMDSAQGQAQVNVLLSLDETYADITPVRTNPN---SPAAFVSIQRGCANNCSYCI 282

Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG-KGLDGEKCT------- 246
           VP+TRG E SR +  +V+E   L   GV E+TLLGQNVN++R   G+D  +         
Sbjct: 283 VPFTRGRERSRQIETIVEEVAHLSRQGVKEVTLLGQNVNSYRDLTGIDDVRNEPVVSMAK 342

Query: 247 --------------FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLH 292
                         F +LL +++E+   +R+R+T+ HP+D  D +++A      +   +H
Sbjct: 343 GFGTIYKPRRGGRGFGELLRAVAEVDPTMRIRFTSPHPKDFPDDVLEAIATTPNICKQIH 402

Query: 293 LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352
           +P QSGS R+L+ M R HT   Y  ++  +R V P +A+SSDFI GF GET+ D   T  
Sbjct: 403 IPAQSGSTRMLELMRRNHTREAYLDLVQHMRQVIPGVALSSDFIAGFCGETEADHEDTRS 462

Query: 353 LVDKIGYAQAFSFKYSPRLGTPGSN-MLEQVDENVKAERLLCLQKKLREQQVSFNDACVG 411
           L++ + Y  AF F YS R  T   + M + V E+VK  RL  ++ +        N   +G
Sbjct: 463 LIEMVDYDMAFLFAYSMRAKTHAYHRMQDDVPEDVKKRRLEEIRDQFYGGATLKNQRRIG 522

Query: 412 QIIEVLIEKHG-KEKGKLVGRS-------------PWLQSVVLNSKNHNIGDIIKVRITD 457
            +  VL+EK   + + +  GR+             P +Q ++   +  N+G+ + V+I  
Sbjct: 523 SLQLVLVEKRSRRNQDEWSGRTDGNIRAVFTDAEVPDVQGLL---RRANVGEYVVVQIEG 579

Query: 458 VKISTLYG 465
               TL G
Sbjct: 580 ATAMTLRG 587


>gi|293376256|ref|ZP_06622499.1| MiaB-like protein [Turicibacter sanguinis PC909]
 gi|325845151|ref|ZP_08168460.1| tRNA methylthiotransferase YqeV [Turicibacter sp. HGF1]
 gi|292645148|gb|EFF63215.1| MiaB-like protein [Turicibacter sanguinis PC909]
 gi|325488816|gb|EGC91216.1| tRNA methylthiotransferase YqeV [Turicibacter sp. HGF1]
          Length = 434

 Score =  236 bits (602), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 145/445 (32%), Positives = 254/445 (57%), Gaps = 26/445 (5%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  + ++F ++GYE+V+    AD+ ++NTC +     +K    + R    
Sbjct: 8   TLGCKVNHYETEAVWELFKNEGYEKVDFKGVADVYIINTCTVTNTGDKKSRQVIRR---- 63

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               I+   + ++ V GC AQ + +EI+     V++V+G     ++P+L+++ R  ++ +
Sbjct: 64  ---AIRRNPEAVMCVMGCYAQTKPKEIMDIEG-VDIVIGTHGRDQIPQLVQKYREERQPI 119

Query: 151 DTDYSV--EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
               +V   D FE L++     +R R   A L IQ+GC+ FCT+C++P+ RG   S+   
Sbjct: 120 SQIQNVFKVDGFETLNVSQFS-DRTR---ATLKIQDGCNNFCTYCIIPWARGTVRSQKPE 175

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
            V+D+ ++L+ NG CE+ L G +  A+   G D E  +F  LL  L +I GL R+R ++ 
Sbjct: 176 IVIDQVKQLVANGHCEVVLTGIHTAAY---GEDLEDYSFGKLLQDLIKIDGLKRIRISSI 232

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
              +M+D +I A    D ++ +LH+P+Q+GS+ ILK M R +T  E+   +  +R +  +
Sbjct: 233 EASEMTDDVITAMKMSDKIVNHLHMPLQAGSNEILKGMKRPYTLAEFEAKVKELRELFDN 292

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           +AI++D IVGFPGET++ F  T++ + +IG+++   F YS R GTP + M  QV E VK+
Sbjct: 293 LAITTDVIVGFPGETEELFNETVETIKRIGFSELHVFPYSVRNGTPAARMENQVPEMVKS 352

Query: 389 ER---LLCLQKKLREQQVSFNDACVGQIIEVLIEK--HGKEKGKLVGRSPWLQSVVLNSK 443
            R   LL L ++L ++  S   +C G+I++V+ E+  H KE G LVG +     V    +
Sbjct: 353 MRVNKLLALSEQLAKEYAS---SCEGKILQVIPEEASHTKE-GYLVGHASNYVKVEFKGE 408

Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468
              IG+++ V++         GE+V
Sbjct: 409 TDLIGEVVPVKVVKADYPICLGEIV 433


>gi|317013714|gb|ADU81150.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Helicobacter
           pylori Gambia94/24]
          Length = 426

 Score =  236 bits (602), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 144/426 (33%), Positives = 234/426 (54%), Gaps = 21/426 (4%)

Query: 36  MNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRI 95
           MN  DS  +        Y+  +    ADLI++NTC +REK   K++S +G+   +K    
Sbjct: 1   MNSRDSEHLLSELSKLDYKETSDPKMADLILINTCSVREKPERKLFSEIGQFAKIKKPNA 60

Query: 96  KEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYS 155
           K G      V GC A   G +IL+++P V+ V+G +   ++ +++ + +  +  +D D S
Sbjct: 61  KIG------VCGCTASHMGADILKKAPSVSFVLGARNVSKISQVIHKEKAVEVAIDYDES 114

Query: 156 VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEAR 215
               FE        + +K  + + L I  GCDK C +C+VP+TRG EIS  +  ++ EA 
Sbjct: 115 AY-AFE-------FFEKKAQIRSLLNISIGCDKKCAYCIVPHTRGKEISIPMDLILKEAE 166

Query: 216 KLIDNGVCEITLLGQNVNAWRGKGLDGE--KCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
           KL +NG  E+ LLGQNVN + G     E  K  FSDLL  LSEI+G+ R+R+T+ HP  M
Sbjct: 167 KLANNGTKELMLLGQNVNNY-GVRFSSEHAKVDFSDLLDKLSEIQGIERIRFTSPHPLHM 225

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
           +D  ++       +   +H+P+QSGS  +LK M R ++   +   +++++++ P++ IS+
Sbjct: 226 NDAFLERFAKNPKVCKSIHMPLQSGSSAVLKMMRRGYSKEWFLNRVEKLKALVPEVGIST 285

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLC 393
           D IVGFP E+D DF  TM++++K+ +   +SF YSPR  T      E+V   V + RL  
Sbjct: 286 DIIVGFPNESDKDFEDTMEVLEKVRFDTLYSFIYSPRPFTEAGAWKERVPLEVSSSRLER 345

Query: 394 LQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV---GRSPWLQSVVLNSK-NHNIGD 449
           LQ + +E         VG+   VL+E   +  G++V   GRS   + + +  K   N G+
Sbjct: 346 LQNRHKEILEEKAKLEVGKTHVVLVENRREMDGQIVGFEGRSDTGKFIEVTCKEKRNPGE 405

Query: 450 IIKVRI 455
           +++V I
Sbjct: 406 LVRVEI 411


>gi|302333252|gb|ADL23445.1| radical SAM domain protein [Staphylococcus aureus subsp. aureus
           JKD6159]
          Length = 448

 Score =  236 bits (601), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 147/431 (34%), Positives = 236/431 (54%), Gaps = 23/431 (5%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  +  +F    YERV+   +AD+ V+NTC +     +K    + R    
Sbjct: 8   TLGCKVNHYETEAIWQLFKEANYERVDFEANADVFVINTCTVTNTGDKKSRQIIRRA--- 64

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               I++  D ++ V GC AQ    EI+   P V+VVVG Q  ++L   ++  R  ++ +
Sbjct: 65  ----IRQNPDAVICVTGCYAQTSSAEIME-IPGVDVVVGTQDRHKLLGYIDEFRKERQPI 119

Query: 151 DTDYSV--EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           +   ++    K+E L   D  Y   R   A L IQEGC+ FCTFC++P+ RG+  SR   
Sbjct: 120 NGVGNIMKNRKYEEL---DVPYFTDR-TRASLKIQEGCNNFCTFCIIPWARGLMRSRDPE 175

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
           +VV++A +L+++G  EI L G +     G G D +    + LL  L  I GL R+R ++ 
Sbjct: 176 KVVEQATQLVNSGYKEIVLTGIHTG---GYGQDLKDYNLAQLLRDLETINGLERIRISSI 232

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
               ++D +I        ++ +LH+P+QSGSD +LK M R++T   + + + ++    PD
Sbjct: 233 EASQLTDEVIDVLERSTKVVRHLHIPLQSGSDTVLKRMRRKYTMDRFSERLTKLHKALPD 292

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           +A++SD IVGFPGET+ +F+ T D + K  +++   F YSPR+GTP + M +Q+DE VK 
Sbjct: 293 LAVTSDVIVGFPGETEAEFQETYDFIVKHKFSELHVFPYSPRIGTPAARMDDQIDEEVKN 352

Query: 389 ER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445
           ER   L+ L  +L +   S  D     ++EV+ E+ G   G LVG +     V       
Sbjct: 353 ERVHKLITLSNQLGKLYASKFDQ---DVLEVIPEEQGNTVGTLVGYADNYMKVQFEGDES 409

Query: 446 NIGDIIKVRIT 456
            IG I+KV+IT
Sbjct: 410 LIGQIVKVKIT 420


>gi|228476133|ref|ZP_04060841.1| conserved hypothetical protein [Staphylococcus hominis SK119]
 gi|314936303|ref|ZP_07843650.1| Fe-S oxidoreductase [Staphylococcus hominis subsp. hominis C80]
 gi|228269956|gb|EEK11436.1| conserved hypothetical protein [Staphylococcus hominis SK119]
 gi|313654922|gb|EFS18667.1| Fe-S oxidoreductase [Staphylococcus hominis subsp. hominis C80]
          Length = 448

 Score =  236 bits (601), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 144/430 (33%), Positives = 241/430 (56%), Gaps = 23/430 (5%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  +  +F    YERV+   +AD+ V+NTC +     +K    + R    
Sbjct: 8   TLGCKVNHYETEAIWQLFKDANYERVDFETNADVYVINTCTVTNTGDKKSRQVIRRA--- 64

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               I+   D +V V GC AQ    EI+   P V+VVVG Q  ++L   +++ R  ++ +
Sbjct: 65  ----IRRNPDAVVCVTGCYAQTSSAEIME-IPGVDVVVGTQDRHKLLSYIDQFREERQPI 119

Query: 151 DTDYSV--EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           +   ++     +E L   D  Y   R   A L IQEGC+ FCTFC++P+ RG+  SR   
Sbjct: 120 NGVGNIMKNRTYEEL---DVPYFTDR-TRASLKIQEGCNNFCTFCIIPWARGLMRSRDPE 175

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
           +VV++A +L+ +G  EI L G +     G G D +    + LL  L EI GL R+R ++ 
Sbjct: 176 KVVEQATQLVQSGYKEIVLTGIHTG---GYGQDLKNYNLAQLLRDLEEIDGLERIRISSI 232

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
               ++D +I    + + ++ +LH+P+QSGSD +LK M R++T   + + + ++    PD
Sbjct: 233 EASQLTDEVIDVLKNSNKVVRHLHVPLQSGSDTVLKRMRRKYTMEHFSERLTKLHDALPD 292

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           +A++SD IVGFPGET+++F+ T D + K  +++   F YS R+GTP + M +Q+DE++K 
Sbjct: 293 LAVTSDVIVGFPGETEEEFQETYDFIVKHKFSELHVFPYSQRIGTPAARMGDQIDESIKN 352

Query: 389 ER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445
           ER   L+ L  +L ++  S  +    +++EV+ E+ G+ K  LVG +     V       
Sbjct: 353 ERVHKLIALSDQLAKEYASKFE---NEVLEVIPEEVGETKNTLVGYADNYMKVEFEGSED 409

Query: 446 NIGDIIKVRI 455
            IG+I+KV+I
Sbjct: 410 LIGEIVKVKI 419


>gi|325997150|gb|ADZ49358.1| Dimethyl allyl adenosine tRNA methylthiotransferase [Helicobacter
           pylori 2017]
          Length = 426

 Score =  236 bits (601), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 149/440 (33%), Positives = 239/440 (54%), Gaps = 25/440 (5%)

Query: 36  MNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRI 95
           MN  DS  +        Y+  +    ADLI++NTC +REK   K++S +G+   +K    
Sbjct: 1   MNSRDSEHLLSELSKLDYKETSDPKMADLILINTCSVREKPERKLFSEIGQFAKIKKPNA 60

Query: 96  KEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYS 155
           K G      V GC A   G +IL+++P V+ V+G +   ++ +++ + +  +  +D D S
Sbjct: 61  KIG------VCGCTASHMGADILKKAPSVSFVLGARNVSKISQVIHKEKAVEVAIDYDES 114

Query: 156 VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEAR 215
               FE        + +K  + + L I  GCDK C +C+VP+TRG EIS  +  ++ EA 
Sbjct: 115 AY-AFE-------FFEKKAQIRSLLNISIGCDKKCAYCIVPHTRGKEISIPMDLILKEAE 166

Query: 216 KLIDNGVCEITLLGQNVNAWRGKGLDGE--KCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
           KL +NG  E+ LLGQNVN + G     E  K  FSDLL  LSEI+G+ R+R+T+ HP  M
Sbjct: 167 KLANNGTKELMLLGQNVNNY-GVRFSSEHAKVGFSDLLDKLSEIQGIERIRFTSPHPLHM 225

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
           +D  ++       +   +H+P+QSGS  +LK M R ++   +   ++R++++ P++ IS+
Sbjct: 226 NDEFLERFAKNPKVCKSIHMPLQSGSSAVLKMMRRGYSKEWFLNRVERLKALVPEVGIST 285

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLC 393
           D IVGFP E+D DF  TM++++K+ +   +SF YSPR  T      E+V   V + RL  
Sbjct: 286 DIIVGFPNESDKDFEDTMEVLEKVRFDTLYSFIYSPRPFTEAGAWKERVPLEVSSSRLER 345

Query: 394 LQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV---GRSPWLQSVVLNSK-NHNIGD 449
           LQ + +E         VG+   VL+E   +  G++V   GRS   + + +  K   N G+
Sbjct: 346 LQNRHKEILEEKAKLEVGKTHVVLVENRREMDGQIVGFEGRSDTGKFIEVTCKEKRNPGE 405

Query: 450 IIKVRITDVKISTLYGELVV 469
           +++V I    IS   G L+ 
Sbjct: 406 LVRVEI----ISHSKGRLIA 421


>gi|315645963|ref|ZP_07899084.1| RNA modification enzyme, MiaB family protein [Paenibacillus vortex
           V453]
 gi|315278724|gb|EFU42038.1| RNA modification enzyme, MiaB family protein [Paenibacillus vortex
           V453]
          Length = 447

 Score =  236 bits (601), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 139/443 (31%), Positives = 241/443 (54%), Gaps = 20/443 (4%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N YD+  +   F ++GY++V+    AD+ ++NTCH+     +K    + R    
Sbjct: 8   TLGCKVNFYDTEAIWQYFKNEGYDQVDFEQTADVYLINTCHVTNTGDKKSRQMIRRA--- 64

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               ++   + +V V GC AQ    EIL   P V++V+G Q   ++ + ++     ++ +
Sbjct: 65  ----VRRNPEAIVAVTGCYAQTSPAEILD-IPGVDLVIGNQDRDKIMDFIQDIEKTRQPI 119

Query: 151 DTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           +   ++     FE + + D    R R   AFL IQ+GC+ FCTFC++P++RG+  SR   
Sbjct: 120 NAVRNIMKTRVFEEMDVPDFA-ERTR---AFLKIQDGCNNFCTFCIIPWSRGLSRSRDPK 175

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
            ++ +A +L+  G  EI L G +     G G D E+   SDLL+ L  + GL R+R ++ 
Sbjct: 176 SIIQQAHQLVGAGYKEIVLTGIHTG---GYGDDLEEYRLSDLLWDLDRVDGLERIRISSI 232

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
               + + ++        +  +LH+P+Q+G D +LK M R++T  E+   +  IR   PD
Sbjct: 233 EASQIDEKMLDVLNRSTKMCRHLHIPLQAGDDTVLKRMRRKYTTEEFYNKMGLIRQAMPD 292

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           + I++D IVGFPGETD+ FR   DL+  I +++   F YS R GTP + M +QVDE VK 
Sbjct: 293 VGITTDVIVGFPGETDEMFRNGYDLMKAIQFSEMHVFPYSKRTGTPAARMEDQVDEEVKN 352

Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK---EKGKLVGRSPWLQSVVLNSKNH 445
            R+  L     + Q+++ +  VG+I++V+ E+  K   + GK+ G S     ++ N  + 
Sbjct: 353 ARVHDLIDLSEQLQLAYAEQFVGKILDVIPEREYKGAPKGGKMQGYSDNYLQLIFNGSSD 412

Query: 446 NIGDIIKVRITDVKISTLYGELV 468
             G + +V++T   ++   GEL+
Sbjct: 413 LEGKLCRVKVTKAGVNECEGELL 435


>gi|326791229|ref|YP_004309050.1| RNA modification enzyme, MiaB family [Clostridium lentocellum DSM
           5427]
 gi|326541993|gb|ADZ83852.1| RNA modification enzyme, MiaB family [Clostridium lentocellum DSM
           5427]
          Length = 435

 Score =  236 bits (601), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 148/434 (34%), Positives = 245/434 (56%), Gaps = 23/434 (5%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N YD+  + + F  QGYE V+  + AD+ V+NTC +   +  K    L + + +
Sbjct: 8   TLGCKVNQYDTEAVLEKFKEQGYEVVDFNEYADVYVVNTCTVTHLSDRKCRQMLRKTKKI 67

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR-V 149
                    D ++V  GC AQ   ++I  +   ++++VG      + +L++     KR  
Sbjct: 68  -------NSDSILVAMGCYAQIAADKIKDQVEEIDIIVGTNKRNEIVDLVDNFEKEKRQT 120

Query: 150 VDTDYSVED--KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
           ++T  ++ D  +FE L I D G  R R    ++ +QEGC+ +C++C++PYTRG   SR  
Sbjct: 121 INTVSNIMDVGEFEELHISDMG-ERTR---VYVKVQEGCNNYCSYCIIPYTRGKIRSRKE 176

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
            QVV+E  KL+  G  EI L G +V A+   G D        LL  + EI+G+ R+R ++
Sbjct: 177 EQVVEEVTKLVGLGFKEIILTGIHVLAY---GKDLGNTDLIQLLKRVHEIEGVERIRMSS 233

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
             P  ++D  I A  ++  +  + HL +QSGS+ ILK MNR++TA EY+  ++R+R++ P
Sbjct: 234 IEPVAITDEFIYALKEMPKVCHHFHLSLQSGSETILKRMNRKYTAVEYKASVERLRTLWP 293

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
           D+AI++D IVGFPGET+++F  T++ V  +  AQ   F +SPR GTP + M  QV   +K
Sbjct: 294 DVAITTDVIVGFPGETEEEFLETVEFVKDVHLAQIHIFPFSPREGTPAAKMRAQVAPEIK 353

Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG-RSPWLQSVVLNSKNHN 446
             R   L +  +  ++++ +  + + +EVL EKH   + ++ G  S +L+  VL   N  
Sbjct: 354 EHRAKVLSEVEKTLRLAYMEQFIDKELEVLFEKH--HENEVTGYTSNYLKVQVLG--NET 409

Query: 447 IGDII-KVRITDVK 459
           I + I KVRI  +K
Sbjct: 410 IENTIQKVRIDAIK 423


>gi|4929773|gb|AAD34147.1|AF152097_1 CGI-05 protein [Homo sapiens]
          Length = 554

 Score =  235 bits (600), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 149/454 (32%), Positives = 242/454 (53%), Gaps = 42/454 (9%)

Query: 17  IVDQCIVPQR-FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREK 75
           ++D+ +  QR  ++++YGCQMNV D+     +    GY R  +   AD+I+L TC IREK
Sbjct: 52  MMDELLGRQRKVYLETYGCQMNVNDTEIAWSILQKSGYLRPVT-SRADVILLVTCSIREK 110

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135
           A + +++ L +++ LK  R +    L + + GC+A+   EEIL R  +V+++ GP  Y  
Sbjct: 111 AEQTIWNRLHQLKALKTRRPRSRVPLRIGILGCMAERLKEEILNREKMVDILAGPDAYRD 170

Query: 136 LPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
           LP LL  A  G++  +   S+++ +  +  V    +     +AF++I  GCD  C++C+V
Sbjct: 171 LPRLLAVAESGQQAANVLLSLDETYADVMPVQTSAS---ATSAFVSIMRGCDNMCSYCIV 227

Query: 196 PYTRGIEISRSLSQVVDEARKLIDN--------------GVCEITLLGQNVNAWR----- 236
           P+TRG E SR ++ +++E +KL +               G+ E+TLLGQNVN++R     
Sbjct: 228 PFTRGRERSRPIASILEEVKKLSEQVFLPPRPPKVLGLQGLKEVTLLGQNVNSFRDNSEV 287

Query: 237 ----------GKGLDGEKCT------FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKA 280
                      +G      T      F+ LL  +S +   +R+R+T+ HP+D  D +++ 
Sbjct: 288 QFNSAVPTNLSRGFTTNYKTKQGGLRFAHLLDQVSRVDPEMRIRFTSPHPKDFPDEVLQL 347

Query: 281 HGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFP 340
             + D +   +HLP QSGS R+L++M R ++   Y +++  IR   P +++SSDFI GF 
Sbjct: 348 IHERDNICKQIHLPAQSGSSRVLEAMRRGYSREAYVELVHHIRESIPGVSLSSDFIAGFC 407

Query: 341 GETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML-EQVDENVKAERLLCLQKKLR 399
           GET++D   T+ L+ ++ Y   F F YS R  T   + L + V E VK  RL  L    R
Sbjct: 408 GETEEDHVQTVSLLREVQYNMGFLFAYSMRQKTRAYHRLKDDVPEEVKLRRLEELITIFR 467

Query: 400 EQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRS 432
           E+    N   VG    VL+E   K     L GR+
Sbjct: 468 EEATKANQTSVGCTQLVLVEGLSKRSATDLCGRN 501


>gi|221140004|ref|ZP_03564497.1| hypothetical protein SauraJ_00040 [Staphylococcus aureus subsp.
           aureus str. JKD6009]
 gi|302751406|gb|ADL65583.1| radical SAM domain protein [Staphylococcus aureus subsp. aureus
           str. JKD6008]
          Length = 448

 Score =  235 bits (600), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 146/431 (33%), Positives = 236/431 (54%), Gaps = 23/431 (5%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  +  +F    YERV+   +AD+ V+NTC +     +K    + R    
Sbjct: 8   TLGCKVNHYETEAIWQLFKEANYERVDFEANADVFVINTCTVTNTGDKKSRQIIRRA--- 64

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               I++  D ++ V GC AQ    EI+   P V+VVVG Q  ++L   ++  R  ++ +
Sbjct: 65  ----IRQNPDAVICVTGCYAQTSSAEIME-IPGVDVVVGTQDRHKLLGYIDEFRKERQPI 119

Query: 151 DTDYSV--EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           +   ++    K+E L   D  Y   R   A L IQEGC+ FCTFC++P+ RG+  SR   
Sbjct: 120 NGVGNIMKNRKYEEL---DVPYFTDR-TRASLKIQEGCNNFCTFCIIPWARGLMRSRDPE 175

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
           +VV++A +L+++G  EI L G +     G G D +    + LL  L  I GL R+R ++ 
Sbjct: 176 KVVEQATQLVNSGYKEIVLTGIHTG---GYGQDLKDYNLAQLLRDLETINGLERIRISSI 232

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
               ++D +I        ++ +LH+P+QSGSD +LK M R++T   + + + ++    PD
Sbjct: 233 EASQLTDEVIDVLERSTKVVRHLHIPLQSGSDTVLKRMRRKYTMDRFSERLTKLHKALPD 292

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           +A++SD IVGFPGET+ +F+ T D + K  +++   F YSPR+GTP   M +Q+DE +K 
Sbjct: 293 LAVTSDVIVGFPGETEAEFQETYDFIVKHKFSELHVFPYSPRIGTPAVRMDDQIDEEIKN 352

Query: 389 ER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445
           ER   L+ L  +L +   S  D     ++EV+ E+ G  +G LVG +     V       
Sbjct: 353 ERVHKLITLSNQLGKLYASKFDQ---DVLEVIPEEQGDTEGTLVGYADNYMKVQFEGDES 409

Query: 446 NIGDIIKVRIT 456
            IG I+KV+IT
Sbjct: 410 LIGQIVKVKIT 420


>gi|298736784|ref|YP_003729314.1| bifunctional enzyme involved in thiolation and methylation of tRNA
           [Helicobacter pylori B8]
 gi|298355978|emb|CBI66850.1| bifunctional enzyme involved in thiolation and methylation of tRNA
           [Helicobacter pylori B8]
          Length = 426

 Score =  235 bits (600), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 143/425 (33%), Positives = 233/425 (54%), Gaps = 19/425 (4%)

Query: 36  MNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRI 95
           MN  DS  +        Y+  +    ADLI++NTC +REK   K++S +G+   +K    
Sbjct: 1   MNSRDSEHLLSELSKLDYKETSDPKTADLILINTCSVREKPERKLFSEIGQFAKIKKPNA 60

Query: 96  KEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYS 155
           K G      V GC A   G +IL+++P V+ V+G +   ++ +++ R +  +  +D D S
Sbjct: 61  KIG------VCGCTASHMGADILKKAPSVSFVLGARNVSKISQVIHREKAVEVAIDYDES 114

Query: 156 VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEAR 215
               FE        + +K  + + L I  GCDK C +C+VP+TRG EIS  +  ++ EA 
Sbjct: 115 AY-AFE-------FFEKKAQIRSLLNISIGCDKKCAYCIVPHTRGKEISIPMDLILREAE 166

Query: 216 KLIDNGVCEITLLGQNVNAWRGK-GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMS 274
           KL +NG  E+ LLGQNVN +  +   +  K  FSDLL  LSEI+G+ R+R+T+ HP  M+
Sbjct: 167 KLANNGTKELMLLGQNVNNYGARFSSEHAKVDFSDLLDKLSEIQGIERIRFTSPHPLHMN 226

Query: 275 DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSD 334
           D  ++       +   +H+P+QSGS  +LK M R ++   +   ++R++++ P++ IS+D
Sbjct: 227 DRFLERFAKNPKVCKSIHMPLQSGSSAVLKMMRRGYSKEWFLNRVERLKALVPEVGISTD 286

Query: 335 FIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCL 394
            IVGFP E+D DF  TM++++K+ +   +SF YSPR  T      E+V   V + RL  L
Sbjct: 287 IIVGFPNESDKDFEDTMEVLEKVRFDTLYSFIYSPRPFTEAGAWKERVPLEVSSSRLERL 346

Query: 395 QKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV---GRSPWLQSVVLNSK-NHNIGDI 450
           Q + +E         VG+   VL+E   +   ++V   GRS   + + +  K   N G++
Sbjct: 347 QNRHKEILEEKAKLEVGKTHVVLVENRREMDDQIVGFEGRSDTGKFIEVACKEKRNPGEL 406

Query: 451 IKVRI 455
           ++V I
Sbjct: 407 VRVEI 411


>gi|261405595|ref|YP_003241836.1| RNA modification enzyme, MiaB family [Paenibacillus sp. Y412MC10]
 gi|261282058|gb|ACX64029.1| RNA modification enzyme, MiaB family [Paenibacillus sp. Y412MC10]
          Length = 447

 Score =  235 bits (600), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 141/443 (31%), Positives = 237/443 (53%), Gaps = 20/443 (4%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N YD+  +   F ++GY++V+    AD+ ++NTCH+     +K    + R    
Sbjct: 8   TLGCKVNFYDTEAIWQYFKNEGYDQVDFEQTADVYLINTCHVTNTGDKKSRQMIRRA--- 64

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               ++   + +V V GC AQ    EIL   P V++V+G Q   ++ + +      ++ +
Sbjct: 65  ----VRRNPEAIVAVTGCYAQTSPAEILD-IPGVDLVIGNQDREKIMDFIHDIEKTRQPI 119

Query: 151 DTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           +   ++     FE + + D    R R   AFL IQ+GC+ FCTFC++P++RG+  SR   
Sbjct: 120 NAVRNIMKTRVFEEMDVPDFA-ERTR---AFLKIQDGCNNFCTFCIIPWSRGLSRSRDPK 175

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
            ++ +A +L+  G  EI L G +     G G D E    SDLL+ L  + GL R+R ++ 
Sbjct: 176 SIIKQAHQLVGAGYKEIVLTGIHTG---GYGDDLEDYRLSDLLWDLDRVDGLERIRISSI 232

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
               + + ++        +  +LH+P+Q+G D +LK M R++T  E+   +  IR   PD
Sbjct: 233 EASQIDEKMLDVLNRSSKMCRHLHIPLQAGDDTVLKRMRRKYTTEEFYNKMGLIRQAMPD 292

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           + I++D IVGFPGETD+ FR   DL+  I +++   F YS R GTP + M +QVDE VK 
Sbjct: 293 VGITTDVIVGFPGETDEMFRNGYDLMKAIQFSEMHVFPYSKRTGTPAARMEDQVDEEVKN 352

Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK---EKGKLVGRSPWLQSVVLNSKNH 445
            R+  L     + Q+++ +  VGQI+ V+ E+  K   + GK+ G S     +V N    
Sbjct: 353 ARVHDLIDLSEQLQLAYAERFVGQILNVIPEREYKGAPKGGKMQGYSDNYLQLVFNGSPD 412

Query: 446 NIGDIIKVRITDVKISTLYGELV 468
             G + +V++T   ++   GEL+
Sbjct: 413 LEGKLCRVKVTKAGVNECEGELL 435


>gi|303241628|ref|ZP_07328127.1| RNA modification enzyme, MiaB family [Acetivibrio cellulolyticus
           CD2]
 gi|302590848|gb|EFL60597.1| RNA modification enzyme, MiaB family [Acetivibrio cellulolyticus
           CD2]
          Length = 438

 Score =  235 bits (599), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 147/440 (33%), Positives = 238/440 (54%), Gaps = 18/440 (4%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  + +MF + GYE V+  + AD+ V+NTC +   +  K    + R +  
Sbjct: 8   TLGCKVNQYETEAILEMFRNNGYEIVDFEEFADVYVINTCTVTNLSDRKSRQMIRRAK-- 65

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
                K   D +VVVAGC AQ   +E+L   P VN+V+G +   ++ E ++    G+  V
Sbjct: 66  -----KNNEDSIVVVAGCYAQTSPDEVLS-IPGVNLVIGTKDKGKIIENIKSIEEGRNKV 119

Query: 151 D--TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           +   D     +FE L    G    K    AF+ IQEGC +FC++C++PY RG   SR + 
Sbjct: 120 NLVQDIMKTREFEEL----GVEVYKERTRAFIKIQEGCSQFCSYCIIPYARGPIRSRPVE 175

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
            V+DE RKL  NG  EI L G ++ ++   G D +  +  D++  + EI G+ R+R  + 
Sbjct: 176 YVLDEVRKLALNGYKEIVLTGIHIASY---GKDIKTTSLIDIIKKVHEIDGVERVRLGSI 232

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
            P  ++   +   G L+ + P+ H+ +QSG D  LK MNRR+T  EYR  I  +RS   D
Sbjct: 233 EPTTITHEFVNEIGKLEKVCPHFHISLQSGCDSTLKRMNRRYTTEEYRSSIALLRSGIKD 292

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           +A+++D +VGFPGETD++F  T+  +++I ++    FKYS R GTP +    Q+    K 
Sbjct: 293 VAVTTDVMVGFPGETDEEFNETVKFLNEISFSAMHVFKYSQRKGTPAAEFSNQISPKKKD 352

Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVLNSKNHNI 447
           ER   L +   ++   FN    G+ +EVL E+  K E G + G +P    V+   +    
Sbjct: 353 ERSEVLIELSSKKTKEFNKRFEGRKMEVLFEQEVKSESGLIEGLTPNYIRVLCEGEPDLN 412

Query: 448 GDIIKVRITDVKISTLYGEL 467
           G I+KV++ +     + G++
Sbjct: 413 GKILKVKLNEAVEDYITGQI 432


>gi|255072327|ref|XP_002499838.1| radical SAM protein with TRAM and UPF0004 domains [Micromonas sp.
           RCC299]
 gi|226515100|gb|ACO61096.1| radical SAM protein with TRAM and UPF0004 domains [Micromonas sp.
           RCC299]
          Length = 507

 Score =  235 bits (599), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 150/487 (30%), Positives = 256/487 (52%), Gaps = 51/487 (10%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +R ++++YGCQMNV DS  +  +  +  Y+  ++ +DAD I++NTC IR+ A  K+++ L
Sbjct: 3   RRAYIETYGCQMNVSDSEIVASVLGASDYDLTDTHEDADAILVNTCAIRDGAEAKIWARL 62

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            +++ +K  R      ++ V+ GC+ +    ++L    + ++V GP  Y  LP L++ AR
Sbjct: 63  RQLKAVKRDRDVRPAPVVGVL-GCMGERLKGKLLEADGLADLVAGPDAYRDLPRLIDAAR 121

Query: 145 FGKR---VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
            G      ++T  S+E+ +  ++ V        G +AF++I  GC+  C FC+VP+TRG 
Sbjct: 122 GGGDQGLAINTQLSLEETYADIAPV---RRSDAGPSAFVSIMRGCNNMCAFCIVPFTRGR 178

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR------------GKGL--------D 241
           E SR    ++DE R+L D G  E+TLLGQNVN++               G         D
Sbjct: 179 ERSRPRGSILDEVRRLSDEGCKEVTLLGQNVNSYADTKTSDAFERYYAPGFKSVYKPRRD 238

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
           G    F++LL +++++   +R+R+T+ HP+D  D +++       +   LH+P QSGS  
Sbjct: 239 G-AVRFAELLDAVADVDPEMRVRFTSPHPKDFPDEVLRVIASRANVAKQLHMPAQSGSSS 297

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
           +L+ M R +T   Y  +++R R     +A+SSDFI GF GET+++   T+ L+  +GY +
Sbjct: 298 VLERMRRGYTREAYLDLVERARRDILGVALSSDFISGFCGETEEEHADTVSLMKAVGYEK 357

Query: 362 AFSFKYSPRLGTPGSNML-EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
           AF F YS R  T  +  L + V E+VK  RL  +    R+   + N   +G++  VL+E 
Sbjct: 358 AFMFAYSMRDKTAAARHLTDDVPEDVKKRRLAEVIDAQRKGAEAANAREIGRVHCVLVEG 417

Query: 421 HGKEKG-KLVGRSPWLQSVVLNSKNH---------------------NIGDIIKVRITDV 458
             K    ++ GR+   + V+++  +                      + GD + VRI   
Sbjct: 418 ESKRSDERMSGRTCTNKRVIIDGVDTFAEYSPSSSSSGNDSPAVVGIHSGDYVAVRIDRA 477

Query: 459 KISTLYG 465
             +TLYG
Sbjct: 478 GANTLYG 484


>gi|251796225|ref|YP_003010956.1| RNA modification enzyme, MiaB family [Paenibacillus sp. JDR-2]
 gi|247543851|gb|ACT00870.1| RNA modification enzyme, MiaB family [Paenibacillus sp. JDR-2]
          Length = 448

 Score =  235 bits (599), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 136/443 (30%), Positives = 242/443 (54%), Gaps = 20/443 (4%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N YD+  +  +F ++GYE+V+    AD+ ++NTC +     +K    + R    
Sbjct: 8   TLGCKVNFYDTEAIWQLFKNEGYEQVDFESTADVYLINTCTVTNTGDKKSRQIIRRA--- 64

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               ++   D ++ V GC AQ    EI+   P V++V+G Q   ++   + +    ++ V
Sbjct: 65  ----VRRNPDAVIAVTGCYAQTSPAEIMA-IPGVDLVIGTQDREKIMTFVNQIHDDRQPV 119

Query: 151 DTDYSV--EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           +   ++    +FE L + D  +N +    AFL IQEGC+ FCTFC++P++RG+  SR   
Sbjct: 120 NAVRNIMKTREFEELDVPD--FNER--TRAFLKIQEGCNNFCTFCIIPWSRGLSRSRDPK 175

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
            V+++A++L+ +G  E+ L G +     G G D E     DLL+ L +I+GL R+R ++ 
Sbjct: 176 SVLEQAKQLVASGYKEVVLTGIHTG---GYGDDMENYRLVDLLWDLDKIEGLERIRISSI 232

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
               + D +I        +  +LH+P+Q+G   +LK M R++T  E+   + RIR   P 
Sbjct: 233 EASQIDDAMIDVLNRSTKMCRHLHIPLQAGDTSVLKRMRRKYTTDEFAAKLKRIREAMPG 292

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           +AI++D IVGFPGET++ F      ++++G+++   F YS R GTP + M +QVD+ VK 
Sbjct: 293 VAITTDVIVGFPGETEEMFENGYKFMEEVGFSEMHVFPYSKRTGTPAARMDDQVDDEVKN 352

Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIE---KHGKEKGKLVGRSPWLQSVVLNSKNH 445
           ER+  L     + Q+++ +  VG +++V+ E   K     G ++G S     +V      
Sbjct: 353 ERVHKLIDLSEKMQLAYAEQHVGAVLDVIPERDYKGAPGTGLVMGYSDNYIQIVFEGTEA 412

Query: 446 NIGDIIKVRITDVKISTLYGELV 468
            +G + +V+IT+  ++    +LV
Sbjct: 413 LVGKLCRVKITEAGVNECRAQLV 435


>gi|213514974|ref|NP_001134025.1| CDK5 regulatory subunit-associated protein 1 [Salmo salar]
 gi|209156200|gb|ACI34332.1| CDK5 regulatory subunit-associated protein 1 [Salmo salar]
          Length = 469

 Score =  234 bits (598), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 123/363 (33%), Positives = 215/363 (59%), Gaps = 26/363 (7%)

Query: 30  KSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRN 89
           ++YGCQMNV D+     +   +GY+R + + +AD+++L TC IREKA + +++ L ++  
Sbjct: 100 ETYGCQMNVNDTEIAWSILQKKGYQRTSDVAEADVVLLVTCSIREKAEQTIWNRLRQLTA 159

Query: 90  LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149
           +K  R+K    + + V GC+A+    E+L R  +++V+ GP  Y  LP LL  A  G++ 
Sbjct: 160 MKKRRLKTRVPMKIGVLGCMAERLKSELLEREKLLDVLAGPDAYRDLPRLLSVAHGGQQA 219

Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209
            +   S+E+ +  +  V   ++  +G++AF++I  GCD  C++C+VP+TRG E SR +S 
Sbjct: 220 SNVLLSLEETYADVMPV---HHSPQGLSAFVSIMRGCDNMCSYCIVPFTRGRERSRPVSS 276

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT----------------------F 247
           +++E   L + GV E+T+LGQNVN++R    + + C+                      F
Sbjct: 277 ILEEVHILSEQGVKEVTMLGQNVNSYRDTS-EEQFCSSEPGQLSRGFRTVYRARPGGLRF 335

Query: 248 SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307
           +DLL  +S I   +R+R+T+ HP+D  D +++   +   +   +HLP QSGS  +L++M 
Sbjct: 336 ADLLDRVSLIDPDMRIRFTSPHPKDFPDEVLQLIKERANICKQVHLPAQSGSSTVLQAMR 395

Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           R ++   Y +++D I+++ P +++SSDFI GF GET++D   T+ L+ ++ Y   F F Y
Sbjct: 396 RGYSREAYLELVDNIKTIIPGVSLSSDFISGFCGETEEDHLQTLSLIREVRYNVGFLFAY 455

Query: 368 SPR 370
           S R
Sbjct: 456 SMR 458


>gi|329314252|gb|AEB88665.1| RNA modification enzyme, MiaB family [Staphylococcus aureus subsp.
           aureus T0131]
          Length = 448

 Score =  234 bits (598), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 145/431 (33%), Positives = 236/431 (54%), Gaps = 23/431 (5%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  +  +F    YERV+   +AD+ V+NTC +     +K    + R    
Sbjct: 8   TLGCKVNHYETEAIWQLFKEANYERVDFEANADVFVINTCTVTNTGDKKSRQIIRRA--- 64

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               I++  D ++ V GC AQ    EI+   P V+VVVG Q  ++L   ++     ++ +
Sbjct: 65  ----IRQNPDAVICVTGCYAQTSSAEIME-IPGVDVVVGTQDRHKLLGYIDEFHKERQPI 119

Query: 151 DTDYSV--EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           +   ++    K+E L   D  Y   R   A L IQEGC+ FCTFC++P+ RG+  SR   
Sbjct: 120 NGVGNIMKNRKYEEL---DVPYFTDR-TRASLKIQEGCNNFCTFCIIPWARGLMRSRDPE 175

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
           +VV++A +L+++G  EI L G +     G G D +    + LL  L  I GL R+R ++ 
Sbjct: 176 KVVEQATQLVNSGYKEIVLTGIHTG---GYGQDLKDYNLAQLLRDLETINGLERIRISSI 232

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
               ++D +I        ++ +LH+P+QSGSD +LK M R++T   + + + ++    PD
Sbjct: 233 EASQLTDEVIDVLERSTKVVRHLHIPLQSGSDTVLKRMRRKYTMDRFSERLTKLHKALPD 292

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           +A++SD IVGFPGET+ +F+ T D + K  +++   F YSPR+GTP + M +Q+DE +K 
Sbjct: 293 LAVTSDVIVGFPGETEAEFQETYDFIVKHKFSELHVFPYSPRIGTPAARMDDQIDEEIKN 352

Query: 389 ER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445
           ER   L+ L  +L +   S  D     ++EV+ E+ G  +G LVG +     V       
Sbjct: 353 ERVHKLITLSNQLGKLYASKFDQ---DVLEVIPEEQGDTEGTLVGYADNYMKVQFEGDES 409

Query: 446 NIGDIIKVRIT 456
            IG I+KV+IT
Sbjct: 410 LIGQIVKVKIT 420


>gi|294501299|ref|YP_003564999.1| ribosomal protein S12 methylthiotransferase [Bacillus megaterium QM
           B1551]
 gi|294351236|gb|ADE71565.1| ribosomal protein S12 methylthiotransferase [Bacillus megaterium QM
           B1551]
          Length = 452

 Score =  234 bits (596), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 143/444 (32%), Positives = 245/444 (55%), Gaps = 21/444 (4%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  +  +F  QGYERV     AD+ V+NTC +     +K    + R    
Sbjct: 8   TLGCKVNHYETEAIWQLFKGQGYERVEYEQTADVYVINTCTVTNTGDKKSRQVIRRA--- 64

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               +++  D ++ V GC AQ    EI+   P V++VVG Q   ++ + +E+ +  ++ +
Sbjct: 65  ----VRKNPDAVICVTGCYAQTSPAEIMA-IPGVDIVVGTQDRVKMLDYIEQFKKERQPI 119

Query: 151 DTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           +   ++     +E L  V    +R R   A L IQEGC+ FCTFC++P+ RG+  SR   
Sbjct: 120 NGVGNIMKTRVYEELD-VPAFTDRTR---ASLKIQEGCNNFCTFCIIPWARGLMRSRDPK 175

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKGLVRLRYTT 267
           +VV +A++L+D G  EI L G +     G G D +    + LL  L S++KGL R+R ++
Sbjct: 176 EVVAQAQQLVDAGYKEIVLTGIHTG---GYGEDMKDYNLAQLLRDLESQVKGLKRIRISS 232

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
                ++D +I+     ++++ +LH+P+QSGS+ +LK M R++T   + + ++R++   P
Sbjct: 233 IEASQITDEVIEVLDQSEMVVRHLHIPLQSGSNTVLKRMRRKYTMEFFGERLNRLKEALP 292

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
            +AI+SD IVGFPGET+++F  T + + + G+++   F YS R GTP + M +Q+DE VK
Sbjct: 293 GLAITSDVIVGFPGETEEEFMETYNFIKEHGFSELHVFPYSKRTGTPAARMTDQIDEEVK 352

Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIE---KHGKEKGKLVGRSPWLQSVVLNSKN 444
            ER+  L +   +    +     G+++EV+ E   K   E G  VG +     VV  +  
Sbjct: 353 NERVHRLIELSNQLAKEYASTFEGEVLEVIPEEKYKEDPESGLYVGYTDNYLKVVFKASE 412

Query: 445 HNIGDIIKVRITDVKISTLYGELV 468
             +G ++KV+I+        GE V
Sbjct: 413 EMVGKLVKVKISKAGYPYNEGEFV 436


>gi|297584652|ref|YP_003700432.1| RNA modification enzyme, MiaB family [Bacillus selenitireducens
           MLS10]
 gi|297143109|gb|ADH99866.1| RNA modification enzyme, MiaB family [Bacillus selenitireducens
           MLS10]
          Length = 441

 Score =  234 bits (596), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 143/428 (33%), Positives = 238/428 (55%), Gaps = 18/428 (4%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  +  +F ++GYE+      AD+ V+NTC +     +K    + R    
Sbjct: 8   TLGCKVNHYETEAIWQLFQAEGYEKEAFDQLADVYVINTCTVTNTGDKKSRQVIRRA--- 64

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               I++  D +V V GC AQ    E++   P V++VVG Q  ++L   ++  +  +  V
Sbjct: 65  ----IRKNPDAVVCVTGCYAQTSPAEVMA-IPGVDIVVGTQDRHKLIPYIKEFQVSREPV 119

Query: 151 DTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           +   ++     +E L  V    +R R   A L IQEGC+ FCTFC++P+ RG+  SR   
Sbjct: 120 NGVGNIMKARVYEELD-VPAFTDRTR---ASLKIQEGCNNFCTFCIIPWARGLMRSRKPE 175

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
            V+ +A +L++ G  EI L G +     G G D +    + LL  L  I+GL R+R ++ 
Sbjct: 176 DVLSQANQLVEAGYKEIVLTGIHTG---GYGEDMKDYNLAGLLRDLETIEGLRRIRISSI 232

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
               ++D +I+     D ++ +LH+P+QSGSD +LK M R++T   YR+ ++R++   P 
Sbjct: 233 EASQITDEVIEVINRSDKVVNHLHIPLQSGSDTVLKRMRRKYTTSFYRERVERLKEALPG 292

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           +A++SD IVGFPGETD++F  T  L+  IGY++   F +S R GTP + M EQVD+ +K 
Sbjct: 293 LAVTSDVIVGFPGETDEEFEETYQLIRDIGYSELHVFPFSKRTGTPAARMDEQVDDGIKN 352

Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKGKLVGRSPWLQSVVLNSKNHNI 447
           ER+  L     +Q   +  +  G+I+E++  E+      +LVG +     V +  ++  I
Sbjct: 353 ERVHRLIALSDQQAKEYASSYEGEIVEMIPEERDADHPERLVGYTDNYLKVAVELEDSYI 412

Query: 448 GDIIKVRI 455
           G+I+KVRI
Sbjct: 413 GEIVKVRI 420


>gi|188527075|ref|YP_001909762.1| conserved hypothetical ATP-binding protein [Helicobacter pylori
           Shi470]
 gi|188143315|gb|ACD47732.1| conserved hypothetical ATP-binding protein [Helicobacter pylori
           Shi470]
          Length = 426

 Score =  234 bits (596), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 141/425 (33%), Positives = 232/425 (54%), Gaps = 19/425 (4%)

Query: 36  MNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRI 95
           MN  DS  +        Y+  +    ADLI++NTC +REK   K++S +G+   +K    
Sbjct: 1   MNSRDSEHLLSELSKLDYKETSDPKAADLILINTCSVREKPERKLFSEIGQFAKIKKPNA 60

Query: 96  KEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYS 155
           K G      V GC A   G +IL+++P V+ V+G +   ++ +++ + +  +  +D D S
Sbjct: 61  KIG------VCGCTASHMGADILKKAPSVSFVLGARNVSKISQVIHKEKAVEVAIDYDES 114

Query: 156 VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEAR 215
               FE        + +K  + + L I  GCDK C +C+VP+TRG EIS  +  ++ EA 
Sbjct: 115 AY-AFE-------FFEKKAQIRSLLNISIGCDKKCAYCIVPHTRGKEISIPMDLILKEAE 166

Query: 216 KLIDNGVCEITLLGQNVNAWRGK-GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMS 274
           KL  NG  E+ LLGQNVN +  +   +  K  FSDLL  LSEI+G+ R+R+T+ HP  M+
Sbjct: 167 KLASNGTKELMLLGQNVNNYGARFSSEHAKVDFSDLLDKLSEIQGIERIRFTSPHPLHMN 226

Query: 275 DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSD 334
           D  ++       +   +H+P+QSGS  +LK M R ++   +   +++++++ P++ IS+D
Sbjct: 227 DAFLERFAKNPKVCKSIHMPLQSGSSTVLKMMRRGYSKEWFLNRVEKLKALVPEVGISTD 286

Query: 335 FIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCL 394
            IVGFP E+D DF  TM++++K+ +   +SF YSPR  T      E+V   V + RL  L
Sbjct: 287 IIVGFPNESDKDFEDTMEVLEKVRFDTLYSFIYSPRPFTEAGAWKERVPLEVSSSRLERL 346

Query: 395 QKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV---GRSPWLQSVVLNSK-NHNIGDI 450
           Q + +E         VG+   VL+E   +   ++V   GRS   + + +  K   N G++
Sbjct: 347 QNRHKEILEEKAKLEVGKTHVVLVENRREIDNQIVGFEGRSDTGKFIEVACKEKRNPGEL 406

Query: 451 IKVRI 455
           ++V I
Sbjct: 407 VRVEI 411


>gi|242020507|ref|XP_002430694.1| CDK5 regulatory subunit-associated protein, putative [Pediculus
           humanus corporis]
 gi|212515884|gb|EEB17956.1| CDK5 regulatory subunit-associated protein, putative [Pediculus
           humanus corporis]
          Length = 581

 Score =  234 bits (596), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 145/433 (33%), Positives = 235/433 (54%), Gaps = 32/433 (7%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           Q+ F++ +GCQMNV D+  +  +    GY+R  S DDAD+I + TC IRE A  K++  L
Sbjct: 80  QKVFLEVHGCQMNVNDAEIVLSVLQKHGYQRTLSKDDADVIFILTCSIRESAESKIWFKL 139

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             + +LK  +      L + + GC+A+   ++++ +  IV++V GP  Y  LP LL    
Sbjct: 140 KELNHLKKKKKN----LKIGLLGCMAERLKDKVIEKEKIVDLVAGPDAYKDLPRLLTTTS 195

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
             ++ ++   S ++ +  +  V    N    V+AF++I  GCD  CT+C+VP+TRG E S
Sbjct: 196 NNQKAINVLLSFDETYADVMPVRLNEN---NVSAFVSIMRGCDNMCTYCIVPFTRGRERS 252

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG--------------LDGEKCT---- 246
           R +  +++E + L D GV +ITLLGQNVN++R                  DG K      
Sbjct: 253 RPIDSILEEVKILSDQGVKQITLLGQNVNSYRDIKSKEYLSTFNEPTVVADGFKTVYKPK 312

Query: 247 -----FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
                FS LL  +SE+   +R+R+T+ HP+D  D ++    +   +  ++HLP+QSGS++
Sbjct: 313 IGGVRFSTLLDKVSEVNPEMRIRFTSPHPKDFPDDVLHLIKERKNICNFIHLPIQSGSNQ 372

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
           +L+ M R +T   Y ++++ IRS+ P+I +S+D I GF GET+ D   TM+++  I Y Q
Sbjct: 373 VLERMRRGYTREAYIKLVENIRSLIPNIVLSTDIITGFCGETEKDHEDTMEMIRLIQYHQ 432

Query: 362 AFSFKYSPRLGTPGSNMLE-QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
            + F YS R  T      E  V + VK  R   +  + R      N++ + Q+  +LIE 
Sbjct: 433 MYFFPYSMREKTTAHRRYEDDVPQEVKMRRFQEVGAEFRRISKKLNESQINQVQVILIEG 492

Query: 421 HGKEKGK-LVGRS 432
             K   + L GR+
Sbjct: 493 FSKRSNEYLAGRN 505


>gi|329924074|ref|ZP_08279337.1| tRNA methylthiotransferase YqeV [Paenibacillus sp. HGF5]
 gi|328940913|gb|EGG37221.1| tRNA methylthiotransferase YqeV [Paenibacillus sp. HGF5]
          Length = 447

 Score =  233 bits (595), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 140/443 (31%), Positives = 237/443 (53%), Gaps = 20/443 (4%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N YD+  +   F ++GY++V+    AD+ ++NTCH+     +K    + R    
Sbjct: 8   TLGCKVNFYDTEAIWQYFKNEGYDQVDFEQTADVYLINTCHVTNTGDKKSRQMIRRA--- 64

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               ++   + +V V GC AQ    EIL   P V++V+G Q   ++ + +      ++ +
Sbjct: 65  ----VRRNPEAIVAVTGCYAQTSPAEILD-IPGVDLVIGNQDREKIMDFIHDIEKTRQPI 119

Query: 151 DTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           +   ++     FE + + D    R R   AFL IQ+GC+ FCTFC++P++RG+  SR   
Sbjct: 120 NAVRNIMKTRVFEEMDVPDFA-ERTR---AFLKIQDGCNNFCTFCIIPWSRGLSRSRDPK 175

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
            ++ +A +L+  G  EI L G +     G G D E    SDLL+ L  + GL R+R ++ 
Sbjct: 176 SIIKQAHQLVGAGYKEIVLTGIHTG---GYGDDLEDYRLSDLLWDLDRVDGLERIRISSI 232

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
               + + ++        +  +LH+P+Q+G D +LK M R++T  E+   +  IR   PD
Sbjct: 233 EASQIDEKMLDVLNRSSKMCRHLHIPLQAGDDTVLKRMRRKYTTEEFYNKMGLIRQAMPD 292

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           + I++D IVGFPGET++ FR   DL+  I +++   F YS R GTP + M +QVDE VK 
Sbjct: 293 VGITTDVIVGFPGETEEMFRNGYDLMKAIQFSEMHVFPYSKRTGTPAARMEDQVDEEVKN 352

Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK---EKGKLVGRSPWLQSVVLNSKNH 445
            R+  L     + Q+++ +  VGQI+ V+ E+  K   + GK+ G S     +V N    
Sbjct: 353 ARVHDLIDLSEQLQLAYAERFVGQILNVIPEREYKGAPKGGKMQGYSDNYLQLVFNGSPD 412

Query: 446 NIGDIIKVRITDVKISTLYGELV 468
             G + +V++T   ++   GEL+
Sbjct: 413 LEGKLCRVKVTKAGVNECEGELL 435


>gi|258424004|ref|ZP_05686886.1| MiaB-like tRNA modifying enzyme [Staphylococcus aureus A9635]
 gi|257845625|gb|EEV69657.1| MiaB-like tRNA modifying enzyme [Staphylococcus aureus A9635]
          Length = 448

 Score =  233 bits (595), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 145/431 (33%), Positives = 236/431 (54%), Gaps = 23/431 (5%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  +  +F    YERV+   +AD+ V+NTC +     +K    + R    
Sbjct: 8   TLGCKVNHYETEAIWQLFKEANYERVDFEANADVFVINTCTVTNTGDKKSRQIIRRA--- 64

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               I++  D ++ V GC AQ    EI+   P V+VVVG Q  ++L   ++  R  ++ +
Sbjct: 65  ----IRQNPDAVICVTGCYAQTSSAEIME-IPGVDVVVGTQDRHKLLGYIDEFRKERQPI 119

Query: 151 DTDYSV--EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           +   ++    K+E L   D  Y   R   A L IQEGC+ FCTFC++P+ RG+  SR   
Sbjct: 120 NGVGNIMKNRKYEEL---DVPYFTDR-TRASLKIQEGCNNFCTFCIIPWARGLMRSRDPE 175

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
           +VV++A +L+++   EI L G +     G G D +    + LL  L  I GL R+R ++ 
Sbjct: 176 KVVEQATQLVNSEYKEIVLTGIHTG---GYGQDLKDYNLAQLLRDLETINGLERIRISSI 232

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
               ++D +I        ++ +LH+P+QSGSD +LK M R++T   + + + ++    PD
Sbjct: 233 EASQLTDEVIDVLERSTKVVRHLHIPLQSGSDTVLKRMRRKYTMDRFSERLTKLHKALPD 292

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           +A++SD IVGFPGET+ +F+ T D + K  +++   F YSPR+GTP + M +Q+DE +K 
Sbjct: 293 LAVTSDVIVGFPGETEAEFQETYDFIVKHKFSELHVFPYSPRIGTPAARMDDQIDEEIKN 352

Query: 389 ER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445
           ER   L+ L  +L +   S  D     ++EV+ E+ G  +G LVG +     V       
Sbjct: 353 ERVHKLITLSNQLGKLYASKFDQ---DVLEVIPEEQGDTEGTLVGYADNYMKVQFEGDES 409

Query: 446 NIGDIIKVRIT 456
            IG I+KV+IT
Sbjct: 410 LIGQIVKVKIT 420


>gi|66807387|ref|XP_637416.1| hypothetical protein DDB_G0287079 [Dictyostelium discoideum AX4]
 gi|74853166|sp|Q54KV4|CK5P1_DICDI RecName: Full=CDK5RAP1-like protein
 gi|60465830|gb|EAL63904.1| hypothetical protein DDB_G0287079 [Dictyostelium discoideum AX4]
          Length = 607

 Score =  233 bits (595), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 154/465 (33%), Positives = 245/465 (52%), Gaps = 53/465 (11%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ ++++YGCQMNV D   +  +  S GY   N  + AD++ LNTC IRE A  K++  L
Sbjct: 107 RKVWIETYGCQMNVSDEEVICSIMKSSGYTISNDFNTADIVFLNTCSIRENAEAKIWLRL 166

Query: 85  GRIRNLKNSRIKEG-GDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
             +R +   R K+G  +L+V V GC+A+   E++L     V++VVGP  Y  LP LL   
Sbjct: 167 TELRAI---RRKQGRPNLIVGVLGCMAERLKEKLLESDMKVDIVVGPDAYRSLPSLLATL 223

Query: 144 RFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
             G++   ++   S ++ +  +  V    N+   V+A+++I  GC+  C++C+VP+TRG 
Sbjct: 224 EDGEQQTAINVILSADETYADIKPVRKSDNQ---VSAYVSIMRGCNNMCSYCIVPFTRGR 280

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG----------LDGEK------- 244
           E SR +  ++ E + L D G  EITLLGQNVN++              +D +K       
Sbjct: 281 ERSRPIDSILREVKDLSDQGFKEITLLGQNVNSFNYYEESNNNNNENFIDTQKNKLELES 340

Query: 245 -----------------CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL 287
                             TF+ L+  +S++   +R+R+T+ HP+D  D L++   +   +
Sbjct: 341 LKPREGFKTIYKSPKKGITFTKLMELVSKVDPEIRIRFTSPHPKDFPDDLLELIKNQPNI 400

Query: 288 MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDF 347
              LH+P QSGS ++L+SM R +T   Y ++ID I+ V P  AISSDFI GF GE+D D 
Sbjct: 401 CKQLHIPAQSGSSKVLESMRRGYTRESYIELIDTIKRVLPGCAISSDFISGFCGESDQDH 460

Query: 348 RATMDLVDKIGYAQAFSFKYSPRLGTPGSNML-EQVDENVKAERLL----CLQKKLREQQ 402
             T+ L++ +GY  AF F YS R  T     L + V   +K  RL        K+L+E+ 
Sbjct: 461 NETISLMEYVGYENAFMFMYSLREKTHAHRQLKDDVPTTLKNSRLTQVVDTFYKRLKEK- 519

Query: 403 VSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVLNSKNHN 446
              N   +G    VL++   K   K  VGR+   + V++++   N
Sbjct: 520 ---NQLEIGNHHLVLVDGFSKRSEKDFVGRTDTNKKVLISNDIEN 561


>gi|304316648|ref|YP_003851793.1| MiaB-like protein tRNA modifying enzyme [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778150|gb|ADL68709.1| MiaB-like protein tRNA modifying enzyme [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 452

 Score =  233 bits (595), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 151/446 (33%), Positives = 241/446 (54%), Gaps = 22/446 (4%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           FF  + GC++N Y++  M ++F + GY+ V+  + AD+ ++NTC +  +   K       
Sbjct: 25  FF--TLGCKVNQYETEAMVEIFKNSGYDVVDFDEYADVYIINTCTVTGRGDMKSRQ---E 79

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           IR  K    K   D ++ V GC +Q    E+L   P VN+V+G +    + +L+E+    
Sbjct: 80  IRKAK----KINPDSIIAVVGCYSQVASNEVLNL-PEVNIVLGTKNKGEVVKLVEKVSGD 134

Query: 147 KRVVDTDYSVED--KFERLSI-VDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           K  ++   ++ D  KFE L I    G+ R     A+L IQ+GC++FCT+C++PY RG   
Sbjct: 135 KEKINAVENIFDNKKFEELKISAQEGHTR-----AYLKIQDGCNQFCTYCIIPYARGPVR 189

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR    ++DE ++L DNG  E+ L G +V ++   G D E     D++  + E+ G+ R+
Sbjct: 190 SRRPDNILDEVKRLRDNGYKEVILTGIHVASY---GKDLENINLLDIIKMIHEVDGIERI 246

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R ++  P  +++  IK    L     + H+ +QSGSD  LK M R++T  EY +IIDRIR
Sbjct: 247 RMSSIEPTFLTEDFIKEVASLPKFCRHYHVSLQSGSDSTLKRMGRKYTTSEYMEIIDRIR 306

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
               D+AI++D +VGFPGETD++F  T + +  I +++   FKYS R GT  +N  +QV 
Sbjct: 307 KYIKDVAITTDVMVGFPGETDEEFNETYEFLKSIEFSKMHVFKYSRRAGTKAANYPDQVK 366

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRSPWLQSVVLNS 442
            +VK ER   L K   E +  F    VG  + VL E+  K+ +G + G +     V + S
Sbjct: 367 NSVKEERSKKLIKLSEENEAKFYKKFVGSTLNVLFEQSVKDVEGYVEGLTDNYIRVAVES 426

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
                  I+ V++  VK     G+LV
Sbjct: 427 DLKIKNKILPVKLIGVKEDFAIGKLV 452


>gi|153813388|ref|ZP_01966056.1| hypothetical protein RUMOBE_03807 [Ruminococcus obeum ATCC 29174]
 gi|149830565|gb|EDM85656.1| hypothetical protein RUMOBE_03807 [Ruminococcus obeum ATCC 29174]
          Length = 321

 Score =  233 bits (595), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 128/303 (42%), Positives = 187/303 (61%), Gaps = 15/303 (4%)

Query: 170 YNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLG 229
           Y  K GV     I  GC+ FC++C+VPY RG E SR    +V E ++L+ +GV E+ LLG
Sbjct: 28  YTFKSGVN----IMFGCNNFCSYCIVPYVRGRERSREPEAIVKEVKRLVADGVSEVMLLG 83

Query: 230 QNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMP 289
           QNVN++ GK L+    TF+ LL  L +++GL R+R+ TSHP+D+SD LI+       +  
Sbjct: 84  QNVNSY-GKTLE-HPVTFAQLLEMLEDVEGLKRIRFMTSHPKDLSDELIETMAKSKKICH 141

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +LHLP+QSGS RILK+MNRR+   +Y  ++D+IR+  PDI++++D IVGFPGET++DF  
Sbjct: 142 HLHLPLQSGSSRILKAMNRRYDKEKYLNLVDKIRTAIPDISLTTDIIVGFPGETEEDFEE 201

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER----LLCLQKKLREQQVSF 405
           T+D+V K GY  AF+F YS R GTP + M EQ+ ++V  ER    L  +Q++ R +   F
Sbjct: 202 TLDVVSKCGYDTAFTFLYSRRSGTPAAEM-EQIPQDVAKERFNRLLALVQQEGRIRSSRF 260

Query: 406 NDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYG 465
                G + EVL+E+  +EKG   GR+ +   V        +G  +KV + +       G
Sbjct: 261 E----GSVQEVLVEEESREKGIFTGRTEYNLLVHFPGTADLLGKYVKVSLDECHGFYYMG 316

Query: 466 ELV 468
            LV
Sbjct: 317 SLV 319


>gi|187251522|ref|YP_001876004.1| MiaB family RNA modification enzyme [Elusimicrobium minutum Pei191]
 gi|186971682|gb|ACC98667.1| RNA modification enzyme, MiaB family [Elusimicrobium minutum
           Pei191]
          Length = 410

 Score =  233 bits (594), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 140/437 (32%), Positives = 227/437 (51%), Gaps = 41/437 (9%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +R F++++GCQMN+ DS  M      +G E    ++ AD++++NTC IRE A  K  SFL
Sbjct: 2   KRVFIQTFGCQMNIADSAEMLAHLSRRGVEETKDIESADIVLVNTCTIREHAEHKAVSFL 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-ERA 143
           GR+   K          +++ AGC A+  GE + +  P +++V G +      ++L E  
Sbjct: 62  GRLAKWKAKDCSR----VIIFAGCAAERLGEALKKDYPFLDIVAGAKGIDNFSKMLDESG 117

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            F     +   SV                K GV  ++TI  GC+  C++C+VP  RG   
Sbjct: 118 LFAVNAQNYTQSV----------------KSGVLDYVTIMRGCNFACSYCIVPSVRGGVK 161

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
             S   +++   +L    V EI LLGQ VNA++ +  D     F+DLL   + +KG+ R+
Sbjct: 162 CLSPEVILENCAELAKKNVKEIVLLGQTVNAYKYEDTD-----FADLLLKAASVKGVERV 216

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+ + HP  ++  LI      D +  ++HLPVQSGSD+ILK M R    Y+ + +I++I 
Sbjct: 217 RFMSPHPAFITPKLIDTIAKNDKIAKHIHLPVQSGSDKILKEMKR---GYDSKTVIEKIS 273

Query: 324 SVRPD-IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
            ++ + + +S+D IVG+P ET++DF  T++LVDK  ++ A+ FK+SPR  TP  ++    
Sbjct: 274 RLKENGVLVSTDIIVGYPTETEEDFERTLELVDKCAFSFAYCFKFSPRRNTPAYSLKPLA 333

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK--HGKEKGKLVGRSPWLQSVVL 440
            +    +RL  L  K+R           G    VL+E    G+  G L  ++P       
Sbjct: 334 SDKEVEKRLDILLNKVRHFSAKAYKDAAGTEQMVLMETVYKGRTSGNLWVKTP------- 386

Query: 441 NSKNHNIGDIIKVRITD 457
             K H +G +++VRI +
Sbjct: 387 --KQHPVGSMVRVRIKE 401


>gi|224476684|ref|YP_002634290.1| putative radical SAM family protein [Staphylococcus carnosus subsp.
           carnosus TM300]
 gi|222421291|emb|CAL28105.1| putative radical SAM family protein [Staphylococcus carnosus subsp.
           carnosus TM300]
          Length = 448

 Score =  233 bits (593), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 142/443 (32%), Positives = 244/443 (55%), Gaps = 23/443 (5%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  +  +F   GY+RV    +AD+ V+NTC +     +K    + R    
Sbjct: 8   TLGCKVNHYETEAIWQLFKDAGYDRVEFDTNADVFVINTCTVTNTGDKKSRQIIRRA--- 64

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               I++  D +V V GC AQ    EI+   P V+VVVG Q   +L + +E  +  ++ +
Sbjct: 65  ----IRKNPDAVVCVTGCYAQTSSAEIME-IPGVDVVVGTQDRTKLLDYIEEFKVERQPI 119

Query: 151 DTDYSV--EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           +   ++    K+E L +    Y   R   A L IQEGC+ FCTFC++P+ RG+  SR   
Sbjct: 120 NGVGNIMKNRKYEELEV---PYFTDR-TRASLKIQEGCNNFCTFCIIPWARGLMRSRDPE 175

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
           +VV++A  L+++G  EI L G +     G G D +    + LL  L  I GL R+R ++ 
Sbjct: 176 KVVEQATTLVNSGYKEIVLTGIHTG---GYGQDLKDYNLAQLLRDLETIDGLERIRISSI 232

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
               ++D +I    + + ++ +LH+P+QSGSD +LK M R+++   + + + ++    P 
Sbjct: 233 EASQLTDEVINVISNSNKVVRHLHVPLQSGSDSVLKRMRRKYSMAHFSERLMKLHEALPG 292

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           +A++SD IVGFPGET+++F+ T D + K  +++   F YS R GTP + M +Q+DE++K 
Sbjct: 293 LAVTSDVIVGFPGETEEEFQETYDFILKHHFSELHVFPYSARTGTPAARMDDQIDESIKN 352

Query: 389 ER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445
           ER   L+ L  +L ++  S  +    +++EV+ E+ G+  G LVG +     V     + 
Sbjct: 353 ERVHKLIELSNQLAKEYASHFE---NEVLEVIPEEAGEAPGTLVGYADNYMKVEFEGDDS 409

Query: 446 NIGDIIKVRITDVKISTLYGELV 468
            IG++++V+IT        G +V
Sbjct: 410 LIGELVRVKITQAGYPLNQGHVV 432


>gi|299535792|ref|ZP_07049113.1| hypothetical protein BFZC1_07203 [Lysinibacillus fusiformis ZC1]
 gi|298728992|gb|EFI69546.1| hypothetical protein BFZC1_07203 [Lysinibacillus fusiformis ZC1]
          Length = 444

 Score =  233 bits (593), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 141/445 (31%), Positives = 242/445 (54%), Gaps = 22/445 (4%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  +  +F  +GY+R      AD+ V+NTC +     +K    + R    
Sbjct: 8   TLGCKVNHYETEAIWQLFKEEGYDRTEFDHQADVYVINTCTVTNTGDKKSRQVIRRA--- 64

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               +++  D ++ V GC AQ    EI+   P V++VVG Q   +L   +E+ R  ++ +
Sbjct: 65  ----VRQNPDAVICVTGCYAQTSPAEIMA-IPGVDIVVGTQDRTKLLGYIEQYRAERQPI 119

Query: 151 DTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           +   ++     +E L  V    +R R   A L IQEGC+ FCTFC++P+ RG+  SR   
Sbjct: 120 NAVRNIMKNRVYEELD-VPAFTDRTR---ASLKIQEGCNNFCTFCIIPWARGLMRSRDPQ 175

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKGLVRLRYTT 267
           +V+ +A++L+D G  EI L G +     G G D +    + LL  L + +KGL RLR ++
Sbjct: 176 EVLHQAQQLVDAGYLEIVLTGIHTG---GYGQDLKDYNLAQLLRDLEANVKGLKRLRISS 232

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
                ++D +I+   +  +++ +LH+P+QSGSD +LK M R++T   + + + ++    P
Sbjct: 233 IEASQLTDEVIEVLRESKIVVNHLHIPIQSGSDTVLKRMRRKYTMEFFGERLTKLHEALP 292

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
           D+A++SD IVGFPGET+++F  T + +    +++   F +SPR GTP + M +Q+DE++K
Sbjct: 293 DLAVTSDVIVGFPGETEEEFMETYNFIRDHKFSELHVFPFSPRTGTPAARMEDQIDEDIK 352

Query: 388 AE---RLLCLQKKLREQQVS-FNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
            E   RL+ L  +L ++  S F D  +  I E  +    +E+G L G +     +V    
Sbjct: 353 NERVHRLISLNDQLAKEYASRFEDQVLEVIPEEFVHDGSEEEGLLTGYTDNYLKIVFEGP 412

Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468
              IG ++KV+IT        G+ V
Sbjct: 413 ESLIGQLVKVKITQAGYPHSQGQFV 437


>gi|295706646|ref|YP_003599721.1| ribosomal protein S12 methylthiotransferase [Bacillus megaterium
           DSM 319]
 gi|294804305|gb|ADF41371.1| ribosomal protein S12 methylthiotransferase [Bacillus megaterium
           DSM 319]
          Length = 452

 Score =  233 bits (593), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 142/444 (31%), Positives = 245/444 (55%), Gaps = 21/444 (4%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  +  +F  QGYERV     AD+ V+NTC +     +K    + R    
Sbjct: 8   TLGCKVNHYETEAIWQLFKGQGYERVEYEQTADVYVINTCTVTNTGDKKSRQVIRRA--- 64

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               +++  D ++ V GC AQ    EI+   P V++VVG Q   ++ + +E+ +  ++ +
Sbjct: 65  ----VRKNPDAVICVTGCYAQTSPAEIMA-IPGVDIVVGTQDRVKMLDYIEQFKKERQPI 119

Query: 151 DTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           +   ++     +E L  V    +R R   A L IQEGC+ FCTFC++P+ RG+  SR   
Sbjct: 120 NGVGNIMKTRIYEELD-VPAFTDRTR---ASLKIQEGCNNFCTFCIIPWARGLMRSRDPK 175

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKGLVRLRYTT 267
           +VV +A++L+D G  EI L G +     G G D +    + LL  L S++KGL R+R ++
Sbjct: 176 EVVAQAQQLVDAGYKEIVLTGIHTG---GYGEDMKDYNLAQLLRDLESQVKGLKRIRISS 232

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
                ++D +I+     ++++ +LH+P+QSGS+ +LK M R++T   + + ++R++   P
Sbjct: 233 IEASQITDEVIEVLDQSEMVVRHLHIPLQSGSNTVLKRMRRKYTMEFFGERLNRLKEALP 292

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
            +AI+SD IVGFPGET+++F  T + + + G+++   F YS R GTP + M +Q+DE VK
Sbjct: 293 GLAITSDVIVGFPGETEEEFMETYNFIKEHGFSELHVFPYSKRTGTPAARMTDQIDEEVK 352

Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIE---KHGKEKGKLVGRSPWLQSVVLNSKN 444
            +R+  L +   +    +     G+++EV+ E   K   E G  VG +     VV  +  
Sbjct: 353 NQRVHRLIELSNQLAKEYASTFEGEVLEVIPEEKYKEDPESGLYVGYTDNYLKVVFKASE 412

Query: 445 HNIGDIIKVRITDVKISTLYGELV 468
             +G ++KV+I+        GE V
Sbjct: 413 EMVGKLVKVKISKAGYPYNEGEFV 436


>gi|319937480|ref|ZP_08011885.1| 2-methylthioadenine synthetase [Coprobacillus sp. 29_1]
 gi|319807320|gb|EFW03929.1| 2-methylthioadenine synthetase [Coprobacillus sp. 29_1]
          Length = 438

 Score =  232 bits (591), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 145/439 (33%), Positives = 237/439 (53%), Gaps = 22/439 (5%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y+S  M  +F   GYE V+  D AD+ V+NTC +      K        R +
Sbjct: 10  TLGCKVNTYESEAMLKLFHQAGYEAVDFKDKADVYVINTCTVTNTGDSKS-------RQM 62

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               I++    +V V GC +Q   EE++     V VV+G Q   ++ + +   +  ++ V
Sbjct: 63  IRKAIRQNEKAIVCVVGCYSQVASEEVVSIEG-VGVVLGTQFRNQIVDFVNEYKTTQKPV 121

Query: 151 D--TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
               D     +FE L I +   N +    AFL IQ+GC+ FCT+C++PY RG   SR+  
Sbjct: 122 IKVADVMKLSRFEDLDIDEFTRNTR----AFLKIQDGCNNFCTYCIIPYARGQIRSRTPE 177

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS-EIKGLVRLRYTT 267
            V+ +A+ L+D+G  EI L G +     G G D E  +F DLL  L+ +IKGL RLR ++
Sbjct: 178 SVLKQAQSLVDHGFVEIVLTGIHT---AGYGQDFENYSFYDLLVDLTTKIKGLKRLRISS 234

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
                ++  +I       +++ +LH+P+QSG D  LK MNR +T  E+   +  ++   P
Sbjct: 235 IEMSQITQEIIDLIAMSPIIVDHLHIPIQSGCDATLKRMNRHYTTAEFSDKLRDLKEKLP 294

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
            +++++D IVGFPGET+++F+ T   ++K+ + Q   F YS R GTP + M +Q+D +VK
Sbjct: 295 SLSVTTDVIVGFPGETEEEFQQTYQWIEKMHFNQLHVFPYSIRKGTPAARMKDQIDGHVK 354

Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKGKLVGRSPWLQSVVLNSKNHN 446
            +R+  L    +  Q  F    +G+ +EVLI E+HG    ++VG +     V ++  + +
Sbjct: 355 HDRVKSLMDLSQRLQSEFASYQIGKTLEVLIEERHGD---RMVGHASNYLKVHVDLPDSS 411

Query: 447 IGDIIKVRITDVKISTLYG 465
           IG I +V+I     + L G
Sbjct: 412 IGHIYRVKILSQNGTELIG 430


>gi|222054021|ref|YP_002536383.1| MiaB-like tRNA modifying enzyme YliG [Geobacter sp. FRC-32]
 gi|221563310|gb|ACM19282.1| MiaB-like tRNA modifying enzyme YliG [Geobacter sp. FRC-32]
          Length = 451

 Score =  231 bits (590), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 157/452 (34%), Positives = 247/452 (54%), Gaps = 31/452 (6%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCH-IREKAAEKVYSFLGRIRN 89
           S GC  N+ D+  M        YE      +AD+I++NTC  I+E   E + + L     
Sbjct: 13  SLGCPKNLVDAEVMLGYLSKDSYEVTTDEHEADIIIVNTCSFIKEAKQESIDTILDLADR 72

Query: 90  LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR-FGKR 148
             ++R K     +++V GC+ Q   EE+++  P V++ VG   Y R+ E++   R   ++
Sbjct: 73  KHDARCK-----MLIVTGCLPQRYQEELVKELPEVDIFVGTGDYPRIAEIIAEKRGLSEQ 127

Query: 149 VV---DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           +    D ++  +D+  RL             TA+L I EGC   C++CV+P  RG   SR
Sbjct: 128 LCYTGDPNFLYDDELPRL-------QSSPYYTAYLKIAEGCSNCCSYCVIPSLRGSFRSR 180

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            + +++ EA+ L+  GV EI L+ Q++  + GK L+ E  T   L+ SL +++GL  +R 
Sbjct: 181 PMDKLLREAKGLVAKGVREINLIAQDITGY-GKDLN-EGATLEALIRSLVKLEGLQWIRL 238

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
             ++P  +SD LIK   + D +  YL +P+Q  SD ILK MNRR +  E R++I ++R+ 
Sbjct: 239 LYAYPDGISDSLIKLIKEEDKVCKYLDIPLQHISDPILKQMNRRSSEAEIRELIAKLRTE 298

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P IAI + FIVGFPGETDDDF+  +  V++  + +   F YS   GTP   M EQV E 
Sbjct: 299 VPGIAIRTSFIVGFPGETDDDFKKLVQFVEETRFDRMGVFCYSREEGTPAFEMAEQVSER 358

Query: 386 VKAERLLCLQKKLREQ-QVSF--NDACVGQIIEVLIEKHGKE-----KGKLVGRSPWLQ- 436
           +K ER    +K +R Q +VSF  N + V +   VLIE + +E     KG+   ++P +  
Sbjct: 359 IKRER---YKKLMRTQARVSFKHNRSLVDKEEMVLIEGYSEETELLLKGRSSRQAPDIDG 415

Query: 437 SVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            V + + N  +G+I+++RITD     L GE+V
Sbjct: 416 QVYITAGNAQVGEIVRLRITDSSDYDLIGEIV 447


>gi|39998295|ref|NP_954246.1| MiaB-like tRNA modifying enzyme YliG [Geobacter sulfurreducens PCA]
 gi|81701038|sp|Q747R0|RIMO_GEOSL RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|39985241|gb|AAR36596.1| MiaB-like tRNA modifying enzyme YliG [Geobacter sulfurreducens PCA]
 gi|298507231|gb|ADI85954.1| ribosomal protein S12 methylthiotransferase [Geobacter
           sulfurreducens KN400]
          Length = 447

 Score =  231 bits (590), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 152/451 (33%), Positives = 238/451 (52%), Gaps = 29/451 (6%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCH-IREKAAEKVYSFLGRIRN 89
           S GC  N+ D+  M        YE      +AD+I++NTC  I+E   E + + L     
Sbjct: 12  SLGCPKNLVDAEVMLGRLAKDRYEITTDEREADIIIVNTCSFIKEAKQESIDTILDLADR 71

Query: 90  LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE----RARF 145
            ++ R +     L++V GC+ Q   EE+ R  P V++ VG   Y R+ E++E    R   
Sbjct: 72  KQDGRCR-----LLIVTGCLPQRYQEELARELPEVDIFVGTGDYPRIAEIIEEKSSRPEQ 126

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            + + D ++  ++   RL       N     TA+L I EGC   C++CV+P  RG   SR
Sbjct: 127 LRYIGDPNFVFDESLTRL-------NSSPAYTAYLKIAEGCSNCCSYCVIPSLRGAFRSR 179

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            L  V+ EAR L+  G  EI L+ Q++  + G+ L G   +   L+  L+ I GL  +R 
Sbjct: 180 PLESVLAEARSLVAGGAREINLIAQDITTY-GRDLPGAP-SLETLIRELAAIDGLAWIRL 237

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
             ++P  ++D LI+   +   +  YL LP+Q  SD ILK MNRR T  + R+++ R+R  
Sbjct: 238 LYAYPDGITDGLIQTIKNEPKVCKYLDLPIQHISDPILKRMNRRSTEPQIRELVARLREE 297

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            PDIA+ +  IVGFPGET++DFR  +  V++  + +   F YS   GTP + M +QV E 
Sbjct: 298 IPDIALRTSLIVGFPGETEEDFRTLLHFVEEAQFDRLGVFCYSREEGTPAAEMPDQVSER 357

Query: 386 VKAERLLCLQKKLREQQVSF--NDACVGQIIEVLIEKHGKE-----KGKLVGRSPWLQ-S 437
           VK ER   L K   + +VSF  N   +    +V++E + +E     KG+   ++P +   
Sbjct: 358 VKRERYKKLMKA--QARVSFKRNRRLIDTEEQVIVEGYSEETELLLKGRSSRQAPDIDGQ 415

Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           V + + N N+GDI+++RITD     L GE++
Sbjct: 416 VYITAGNANVGDIVRLRITDSSDYDLIGEII 446


>gi|239827771|ref|YP_002950395.1| RNA modification enzyme, MiaB family [Geobacillus sp. WCH70]
 gi|239808064|gb|ACS25129.1| RNA modification enzyme, MiaB family [Geobacillus sp. WCH70]
          Length = 451

 Score =  231 bits (589), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 149/447 (33%), Positives = 245/447 (54%), Gaps = 27/447 (6%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  +  +F   GYER +    AD+ V+NTC +     +K    + R    
Sbjct: 8   TLGCKVNHYETEAIWQLFKKAGYERKDFDSRADVYVINTCTVTNTGDKKSRQVIRRA--- 64

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               I+   D +V V GC AQ    E++   P V++V+G Q   ++ E +ER +  ++ +
Sbjct: 65  ----IRRNPDAVVCVTGCYAQTSPAEVMA-IPGVDIVIGTQDRGKILEYIERFQRERQPI 119

Query: 151 DTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           +   ++     FE + + +   +R R   A L IQEGC+ FCTFC++P+ RG+  SR   
Sbjct: 120 NGVSNIMKTRVFEEMDVPEFT-DRTR---ASLKIQEGCNNFCTFCIIPWARGLMRSRDPK 175

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE-IKGLVRLRYTT 267
           +V+ +A++L+D G  EI L G +     G G D +  +F+ LL  L E + GL RLR ++
Sbjct: 176 EVIRQAQQLVDAGYKEIVLTGIHTG---GYGTDLKDYSFAALLRDLDEQVVGLKRLRISS 232

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
                ++D +I+     D ++ +LH+P+QSGS+ +LK M R++T   + + + R+R V P
Sbjct: 233 IEASQITDEIIEVLQRSDKIVRHLHIPLQSGSNTVLKRMRRKYTVEFFAERLQRLREVFP 292

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
           ++AI+SD IVGFPGET+++F  T   + +  +++   F YS R GTP + M  QVDE VK
Sbjct: 293 ELAITSDVIVGFPGETEEEFMETYHFIREQRFSELHVFPYSKRTGTPAARMPNQVDEEVK 352

Query: 388 AE---RLLCLQKKLREQQVSFNDACVGQIIEVLIE---KHGKEKGKLVGRSPWLQSVVLN 441
            E   RL+ L  +L ++  S  +   GQ++EV+ E   K   E G  +G +     V   
Sbjct: 353 NERVHRLIALSDQLAKEYASQFE---GQVLEVIPEERDKENPESGLYIGYTDNYLKVKFP 409

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
           +    +G+I+KV+IT        GE V
Sbjct: 410 ATEEMVGEIVKVKITKAGYPYNEGEFV 436


>gi|126652827|ref|ZP_01724972.1| Fe-S oxidoreductase [Bacillus sp. B14905]
 gi|126590363|gb|EAZ84483.1| Fe-S oxidoreductase [Bacillus sp. B14905]
          Length = 449

 Score =  231 bits (589), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 142/445 (31%), Positives = 241/445 (54%), Gaps = 22/445 (4%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  +  +F  +GY+R      AD+ V+NTC +     +K    + R    
Sbjct: 13  TLGCKVNHYETEAIWQLFKDEGYDRTEFDQQADVYVINTCTVTNTGDKKSRQVIRRA--- 69

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               I++  D ++ V GC AQ    EI+   P V++VVG Q   +L   +++ R  ++ +
Sbjct: 70  ----IRQNPDAVICVTGCYAQTSPAEIMA-IPGVDIVVGTQDRTKLLGYIDQYRAERQPI 124

Query: 151 DTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           +   ++     +E L  V    +R R   A L IQEGC+ FCTFC++P+ RG+  SR   
Sbjct: 125 NAVRNIMKNRVYEELD-VPAFTDRTR---ASLKIQEGCNNFCTFCIIPWARGLMRSRDPQ 180

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKGLVRLRYTT 267
           +V+ +A++L+D G  EI L G +     G G D +    + LL  L + +KGL RLR ++
Sbjct: 181 EVLHQAQQLVDAGYLEIVLTGIHTG---GYGQDLKDYNLAQLLRDLEANVKGLKRLRISS 237

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
                ++D +I    +  +++ +LH+P+QSGSD +LK M R++T   + + + ++    P
Sbjct: 238 IEASQLTDEVIDVLRESKIVVNHLHIPIQSGSDTVLKRMRRKYTMEFFGERLTKLHEALP 297

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
           D+A++SD IVGFPGET+++F  T + +    +++   F +SPR GTP + M +Q+DE++K
Sbjct: 298 DLAVTSDVIVGFPGETEEEFMDTYNFIRDHKFSELHVFPFSPRTGTPAARMEDQIDEDIK 357

Query: 388 AE---RLLCLQKKLREQQVS-FNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
            E   RL+ L  +L ++  S F D  +  I E  +    +E+G L G +     VV    
Sbjct: 358 NERVHRLISLNDQLAKEYASRFEDQVLEVIPEEFVHDGSEEEGLLTGYTDNYLKVVFEGP 417

Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468
              IG ++KV+IT        G+ V
Sbjct: 418 ESLIGQLVKVKITQAGYPHSQGQFV 442


>gi|169824473|ref|YP_001692084.1| Fe-S oxidoreductase [Finegoldia magna ATCC 29328]
 gi|167831278|dbj|BAG08194.1| Fe-S oxidoreductase [Finegoldia magna ATCC 29328]
          Length = 430

 Score =  231 bits (588), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 137/392 (34%), Positives = 221/392 (56%), Gaps = 18/392 (4%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  M ++F  +GYE  +  +  D+ VLNTC +   +  K    + +IR+ 
Sbjct: 8   TLGCKVNQYETEAMAELFVKKGYEITDDYN-CDVFVLNTCTVTNLSDRKSRQQISKIRS- 65

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
                 E  + ++ V GC +Q   +EI      VNV++G +    + EL E A+   +++
Sbjct: 66  ------ENSNAVIAVVGCYSQVSPDEI-ENIQGVNVILGTKYRKEIVELCELAKSSNKII 118

Query: 151 DTDYSV--EDKFERLSIVDGGYNRKRGVT-AFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
           +   ++    +FE L+I     N +  +T A++ IQEGC +FC++C++PY RG   SR++
Sbjct: 119 NKVENIGKNREFEELTI-----NTEHSMTRAYIKIQEGCSQFCSYCIIPYARGPIRSRNI 173

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
             +V EA++L DNG  EI L G +V ++ GK  D +     D++  +S I  L R+R ++
Sbjct: 174 RDIVLEAKRLADNGFKEIVLTGIHVASY-GKDFDNKDIGLIDVIEDISNIDKLKRIRLSS 232

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
             PR +    +     ++    + HL +QSGSD IL+SMNR++  + Y + I+ IR   P
Sbjct: 233 LEPRIVDKKFLDRLSQVEQFCDHFHLSLQSGSDSILQSMNRKYDTHLYERTINLIREYYP 292

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
           + AI++D IVGFPGETD+DF  T++ VDKI +++   FKYS R GT  S M  Q+   VK
Sbjct: 293 NAAITTDIIVGFPGETDEDFEQTLNFVDKIKFSKIHVFKYSNRKGTVASKMKNQIPGLVK 352

Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419
            ER   L +K +     F D  + Q I+VL E
Sbjct: 353 KERSQRLIEKSKYYTDKFLDNMLNQPIKVLFE 384


>gi|315658148|ref|ZP_07911020.1| Fe-S oxidoreductase [Staphylococcus lugdunensis M23590]
 gi|315496477|gb|EFU84800.1| Fe-S oxidoreductase [Staphylococcus lugdunensis M23590]
          Length = 451

 Score =  230 bits (587), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 145/442 (32%), Positives = 236/442 (53%), Gaps = 25/442 (5%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  +  +F    YERV+   +AD+ V+NTC +     +K    + R    
Sbjct: 11  TLGCKVNHYETEAIWQLFKEANYERVDFETNADVYVINTCTVTNTGDKKSRQVIRRA--- 67

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               I++  D ++ V GC AQ    EI+   P V+VVVG Q  ++L   ++  +  ++ +
Sbjct: 68  ----IRKNPDAVICVTGCYAQTSSAEIME-IPGVDVVVGTQDRHKLLSYIDEFQKERQPI 122

Query: 151 DTDYSV--EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           +   ++     +E L   D  Y   R   A L IQEGC+ FCTFC++P+ RG+  SR   
Sbjct: 123 NGVGNIMKNRTYEEL---DVPYFTDR-TRASLKIQEGCNNFCTFCIIPWARGLMRSRDPK 178

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
           +VV++A  L++ G  EI L G +     G G D +    + LL  L  I  L R+R ++ 
Sbjct: 179 KVVEQATTLVNAGYKEIVLTGIHTG---GYGQDLKNYNLAQLLRDLETIDSLERIRISSI 235

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
               ++D +I      + ++ +LH+P+QSGSD +LK M R++T   + + + ++    PD
Sbjct: 236 EASQLTDEVIDVIEKSNKVVRHLHIPLQSGSDSVLKRMRRKYTMEHFSERLSKLHKALPD 295

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           +A++SD IVGFPGETD++F+ T D + K  +++   F YS R+GTP + M  Q+DE+VK 
Sbjct: 296 LAVTSDVIVGFPGETDEEFQETFDFIAKHKFSELHVFPYSSRIGTPAARMDNQIDEDVKN 355

Query: 389 ER---LLCLQKKLREQQVS-FNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
           ER   L+ L  +L ++  S F D     ++EV+ E+ G   G L G +     V  +   
Sbjct: 356 ERVHKLIALSDQLAKEYASKFED----DVLEVIPEEKGSFHGSLAGYADNYMKVQFDGDE 411

Query: 445 HNIGDIIKVRITDVKISTLYGE 466
             IG I+KV+I         GE
Sbjct: 412 SLIGQIVKVKIVHADYPLNKGE 433


>gi|289550653|ref|YP_003471557.1| MiaB family protein [Staphylococcus lugdunensis HKU09-01]
 gi|289180185|gb|ADC87430.1| MiaB family protein [Staphylococcus lugdunensis HKU09-01]
          Length = 448

 Score =  230 bits (587), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 146/442 (33%), Positives = 237/442 (53%), Gaps = 25/442 (5%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  +  +F    YERV+   +AD+ V+NTC +     +K    + R    
Sbjct: 8   TLGCKVNHYETEAIWQLFKEANYERVDFETNADVYVINTCTVTNTGDKKSRQVIRRA--- 64

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               I++  D ++ V GC AQ    EI+   P V+VVVG Q  ++L   ++  +  ++ +
Sbjct: 65  ----IRKNPDAVICVTGCYAQTSSAEIME-IPGVDVVVGTQDRHKLLSYIDEFQKERQPI 119

Query: 151 DTDYSV--EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           +   ++     +E L   D  Y   R   A L IQEGC+ FCTFC++P+ RG+  SR   
Sbjct: 120 NGVGNIMKNRTYEEL---DVPYFTDR-TRASLKIQEGCNNFCTFCIIPWARGLMRSRDPK 175

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
           +VV++A  L++ G  EI L G +     G G D +    + LL  L  I GL R+R ++ 
Sbjct: 176 KVVEQATTLVNAGYKEIVLTGIHTG---GYGQDLKNYNLAQLLRDLETIDGLERIRISSI 232

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
               ++D +I      + ++ +LH+P+QSGSD +LK M R++T   + + + ++     D
Sbjct: 233 EASQLTDEVIDVIEKSNKVVRHLHIPLQSGSDSVLKRMRRKYTMEHFSERLSKLHKALSD 292

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           +A++SD IVGFPGETD++F+ T D + K  +++   F YS R+GTP + M  Q+DE+VK 
Sbjct: 293 LAVTSDVIVGFPGETDEEFQETFDFIAKHKFSELHVFPYSSRIGTPAARMDNQIDEDVKN 352

Query: 389 ER---LLCLQKKLREQQVS-FNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
           ER   L+ L  +L ++  S F D     ++EV+ E+ G   G LVG +     V  +   
Sbjct: 353 ERVHKLIALSDQLAKEYASKFED----DVLEVIPEEKGSFHGSLVGYADNYMKVQFDGDE 408

Query: 445 HNIGDIIKVRITDVKISTLYGE 466
             IG I+KV+I         GE
Sbjct: 409 SLIGQIVKVKIVHADYPLNKGE 430


>gi|331007130|ref|ZP_08330347.1| tRNA-i(6)A37 methylthiotransferase [gamma proteobacterium IMCC1989]
 gi|330419065|gb|EGG93514.1| tRNA-i(6)A37 methylthiotransferase [gamma proteobacterium IMCC1989]
          Length = 280

 Score =  230 bits (587), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 116/271 (42%), Positives = 180/271 (66%), Gaps = 15/271 (5%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ ++K++GCQMN YDS RM+D+   S G    +  +DAD++++NTC IREKA EK++  
Sbjct: 21  KKLYIKTHGCQMNEYDSSRMKDLLGESHGMVETDDPEDADVVLINTCSIREKAQEKLFHQ 80

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK    ++  ++++ V GCVA  EG  I +R+P V+++ GPQT +RLPE++E  
Sbjct: 81  LGRWKRLK----EKNPNVVIGVGGCVASQEGGAIAKRAPFVDLIFGPQTLHRLPEMIETP 136

Query: 144 R-FGKRVVDTDYSVEDKFERLS--IVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           R  G  VVD  +   +KF+ L   + DG       V+AF++I EGC K+C+FCVVPYTRG
Sbjct: 137 RDNGVVVVDITFPEIEKFDNLPQPVADG-------VSAFVSIMEGCSKYCSFCVVPYTRG 189

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR ++ V+ E   L   GV E+ LLGQNVNA+R +  DG     ++L+  ++ I+G+
Sbjct: 190 EEVSRPVNDVLVEVAHLAQQGVREVNLLGQNVNAYRAEAEDGHTVDLAELITYVAAIEGI 249

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL 291
            R+RYTTSHP + S+ LI+A+ ++  L+ ++
Sbjct: 250 DRIRYTTSHPVEFSESLIQAYAEVPELVSHI 280


>gi|138896073|ref|YP_001126526.1| Fe-S oxidoreductase [Geobacillus thermodenitrificans NG80-2]
 gi|196248967|ref|ZP_03147667.1| RNA modification enzyme, MiaB family [Geobacillus sp. G11MC16]
 gi|134267586|gb|ABO67781.1| Fe-S oxidoreductase [Geobacillus thermodenitrificans NG80-2]
 gi|196211843|gb|EDY06602.1| RNA modification enzyme, MiaB family [Geobacillus sp. G11MC16]
          Length = 449

 Score =  230 bits (587), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 141/445 (31%), Positives = 246/445 (55%), Gaps = 25/445 (5%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  +  +F   GYER      AD+ V+NTC +     +K    + R    
Sbjct: 8   TLGCKVNHYETEAIWQLFKKAGYERKEFESHADVYVINTCTVTNTGDKKSRQVIRRA--- 64

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               ++   D +V V GC AQ    E++   P V++V+G Q  +++ + +E+ +  ++ +
Sbjct: 65  ----VRRNPDAVVCVTGCYAQTSPAEVMA-IPGVDIVIGTQDRHKILDYVEQFQRERQPI 119

Query: 151 DTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           +  +++     FE +  V    +R R   A L IQEGC+ FCTFC++P+ RG+  SR   
Sbjct: 120 NAVHNIMKTRVFEEMD-VPAFTDRTR---ASLKIQEGCNNFCTFCIIPWARGLMRSRDPQ 175

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE-IKGLVRLRYTT 267
           +++ +AR+L+  G  EI L G +     G G D +   F+ LL  L E + GL R+R ++
Sbjct: 176 EIIRQARQLVAAGYKEIVLTGIHTG---GYGTDLKDYNFAALLRDLDEQVPGLKRIRISS 232

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
                ++D +I      D ++ +LH+P+QSGS+ +LK M R++T   + + + R+R V P
Sbjct: 233 IEASQLTDEVIDVLRRSDKIVRHLHIPLQSGSNTVLKRMRRKYTVEFFAERLARLREVFP 292

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
           ++A++SD IVGFPGET+++F  T + + +  +++   F YS R GTP + M +Q+DE  K
Sbjct: 293 ELAVTSDVIVGFPGETEEEFMETYNFIREQRFSELHVFPYSKRTGTPAARMPDQIDEETK 352

Query: 388 AE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNSK 443
            +   RL+ L  +L ++  S  +   GQ++EV+ E+H KE+ G  +G +     V   + 
Sbjct: 353 HDRVRRLIALSDQLAKEYASRFE---GQVLEVIPEEHDKEEPGMYIGYTDNYLKVRFPAT 409

Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468
              +G+++KV+IT        GE V
Sbjct: 410 EEMVGELVKVKITKAGYPYNEGEFV 434


>gi|291549892|emb|CBL26154.1| MiaB-like tRNA modifying enzyme [Ruminococcus torques L2-14]
          Length = 450

 Score =  230 bits (586), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 144/451 (31%), Positives = 243/451 (53%), Gaps = 46/451 (10%)

Query: 33  GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92
           GC++N Y++  M++M    GYE V   + ADL V+NTC +   A  K    L R R +  
Sbjct: 10  GCKVNAYETEAMQEMLEKAGYEIVPFKEGADLYVINTCTVTNIADRKSRQMLHRARKM-- 67

Query: 93  SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDT 152
                  D +VV AGC  QA+ +EI +    +++V+G      L E LE     +R  + 
Sbjct: 68  -----NPDAVVVAAGCYVQAKEKEI-QVDDCIDIVLGNNKKQNLIEALEEY---ERTHNA 118

Query: 153 DYSVED-------------------------KFERLSIVDGGYNRKRGVTAFLTIQEGCD 187
           D +V +                         ++E L +   G + +    A++ +Q+GC+
Sbjct: 119 DCNVTENEKNAKNQENDRKAEIKMEEIGKTKEYENLHLTKPGDHTR----AYIKVQDGCN 174

Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK-CT 246
           +FCT+C++PY RG   SRS+  V+DE R L DNG  E+ L G +++++   G+D +K   
Sbjct: 175 QFCTYCIIPYARGRVRSRSMEDVLDEVRTLADNGYKEVVLTGIHLSSY---GIDFDKEYH 231

Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306
             +L+ ++ EI G+ R+R  +  P  +++   +    L  + P+ HL +QSG D  LK M
Sbjct: 232 LLELIRAVHEIDGIERIRLGSLEPGIITEEFAEGIAKLPKMCPHFHLSLQSGCDATLKRM 291

Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
           NRR+T+ EY +  + +R   P+ A+++D IVGFPGET+++F+ + D VD I + +   FK
Sbjct: 292 NRRYTSSEYAEKCELLRKYFPNPALTTDVIVGFPGETEEEFKESYDFVDSIDFYETHIFK 351

Query: 367 YSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG 426
           YS R GT  + M +QVDE +KA+R   L +   +++ ++  +  G+ +EVL+E++ +  G
Sbjct: 352 YSRREGTKAAVMPDQVDEQIKAKRSAQLIELGEKKRAAYEQSFQGKEVEVLVEENLELNG 411

Query: 427 KLV--GRSPWLQSVVLNSKNHNIGDIIKVRI 455
           K V  G +     + L +  +    I+KV+I
Sbjct: 412 KEVQTGHTKEYMKIALETNENLKNSIVKVQI 442


>gi|159481396|ref|XP_001698765.1| hypothetical protein CHLREDRAFT_81764 [Chlamydomonas reinhardtii]
 gi|158273476|gb|EDO99265.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 542

 Score =  230 bits (586), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 156/463 (33%), Positives = 239/463 (51%), Gaps = 39/463 (8%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +++F+ ++GCQMN+ DS RM  +  S GY       +AD+++ NTC IREKA +KVYS L
Sbjct: 98  KKYFIHTFGCQMNMADSERMAGVLESVGYVGSEDASEADVLIYNTCSIREKAEQKVYSAL 157

Query: 85  GR-------IRNLKNSRIKEGGDLLVVVAGCVAQAEGE-EILRRSPIVNVVVGPQTYYRL 136
           G+       + N     +K GG       G     EGE EI      + +   PQ   R+
Sbjct: 158 GKQVRTRGLVPNSTEPIMKAGG-------GQNVGQEGELEIG-----LKLSASPQFANRI 205

Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
            ELL++A   +       +VE+             R+  +TA++ +  GC++ CT+CVVP
Sbjct: 206 NELLDQANDAQVCATEQVAVEEDITTP-------RRESNITAWVNVIYGCNEKCTYCVVP 258

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG--------EKCTFS 248
           YTRG E SR    +  E   L + G  E+TLLGQNV+A+ G+ L G           TF+
Sbjct: 259 YTRGAEQSRRPEDIRREMMALGEAGYKEVTLLGQNVDAY-GRDLPGMAADASGRRAWTFT 317

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN- 307
           DLL  + ++ G+ R+R+ TSHPR  +D L++A  +L  L  + H+P Q      L +   
Sbjct: 318 DLLRYVHDVPGIERIRFATSHPRYFTDRLVRACSELPKLCEFFHIPFQVRFVWGLVAAGV 377

Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
             H      +  DRI    PD +IS D IVGFPGET++ ++ T DLV +IG+ +  +  Y
Sbjct: 378 GAHLPGPISRGPDRIAGYMPDASISGDVIVGFPGETEEQYQRTEDLVREIGFDRVNTAAY 437

Query: 368 SPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKG 426
           SPR  TP +    QV + +KA+RL  L K + E          G+ +EVL+E  + K   
Sbjct: 438 SPRPNTPAAEWENQVADLIKADRLNRLNKVVMEVATERAQRFQGRTLEVLVEGPNPKNPA 497

Query: 427 KLVGRSPWLQSVVLNSKNHNI-GDIIKVRITDVKISTLYGELV 468
           +  GR    + V  +     + G ++ VR+ +    +++GE+V
Sbjct: 498 QAFGRIRHNKLVYFDGDGKTLRGQLVMVRVDECNAFSMFGEMV 540


>gi|304403939|ref|ZP_07385601.1| RNA modification enzyme, MiaB family [Paenibacillus curdlanolyticus
           YK9]
 gi|304346917|gb|EFM12749.1| RNA modification enzyme, MiaB family [Paenibacillus curdlanolyticus
           YK9]
          Length = 464

 Score =  229 bits (585), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 144/444 (32%), Positives = 239/444 (53%), Gaps = 21/444 (4%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMD-DADLIVLNTCHIREKAAEKVYSFLGRIRN 89
           + GC++N YD+  M  +F + GYE+V+  +  AD+ V+NTC +     +K          
Sbjct: 8   TLGCKVNFYDTEAMWQLFKNDGYEQVDFEERTADVYVINTCTVTNTGDKKSRQ------- 60

Query: 90  LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149
           +    I+   D ++ V GC AQ    EI+   P V++V+G Q   +L   + + +  ++ 
Sbjct: 61  IIRRAIRRNPDAVIAVTGCYAQTSPAEIME-IPGVDLVIGTQDRDKLLGYVGQIQQDRQP 119

Query: 150 VDTDYSV--EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
           V+   ++    +FE L + D    R R   AFL IQEGC+ FCTFC++P++RG+  SR  
Sbjct: 120 VNAVRNIMKTREFEELDVPDFA-ERTR---AFLKIQEGCNNFCTFCIIPWSRGLSRSRDP 175

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
             V+ +A +L++ G  EI L G +     G G D E    SDLL+ L +++GL R+R ++
Sbjct: 176 KSVIAQAEQLVEAGYKEIVLTGIHTG---GYGDDLENYRLSDLLWDLDKVEGLERIRISS 232

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
                + D +I        +  +LH+P+Q+G D +LK M R++T  E+ + +  +    P
Sbjct: 233 IEASQIDDKMIDVLNRSSKMCRHLHIPLQAGEDAVLKRMRRKYTTAEFAEKVKMLHRAMP 292

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
            +AI++D IVGFPGETD+ F      + +IG+++   F YS R GTP + M +QVDE VK
Sbjct: 293 GVAITTDVIVGFPGETDEMFEEGYRFMQEIGFSEMHVFPYSKRTGTPAARMEDQVDEEVK 352

Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIE---KHGKEKGKLVGRSPWLQSVVLNSKN 444
            +R+  L     + Q+ +    VG++++V+ E   K     G ++G S     VV     
Sbjct: 353 NDRVHKLIDLSEKMQLDYAKQWVGEVVDVIPERDYKGAPGTGLVMGYSGNYLQVVFEGSE 412

Query: 445 HNIGDIIKVRITDVKISTLYGELV 468
             IG + +V+IT+  ++   G+LV
Sbjct: 413 ALIGQLCRVKITEAGVNECRGQLV 436


>gi|302814840|ref|XP_002989103.1| hypothetical protein SELMODRAFT_235679 [Selaginella moellendorffii]
 gi|300143204|gb|EFJ09897.1| hypothetical protein SELMODRAFT_235679 [Selaginella moellendorffii]
          Length = 507

 Score =  229 bits (585), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 153/470 (32%), Positives = 239/470 (50%), Gaps = 66/470 (14%)

Query: 60  DDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEG-----GDLLVVVAGCVAQAEG 114
           +++D+I++NTC IR+ A  K++  L   +++K++  K G         V V GC+A+   
Sbjct: 26  EESDVILINTCAIRDNAENKIWQRLNYFKHIKSNWRKNGTKSSRPPPKVAVLGCMAERLK 85

Query: 115 EEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKR 174
           E+++    +V+VV GP  Y  LP LL     G++ ++T  S+E+ +  +S V      K 
Sbjct: 86  EKLIEADKMVDVVCGPDAYRDLPRLLSSVEQGQQAINTLLSLEETYADVSPVRIA---KD 142

Query: 175 GVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA 234
            VTAF++I  GC+  C+FC+VP+TRG E SR L  +V E  +L + GV E+TLLGQNVN+
Sbjct: 143 SVTAFVSIMRGCNNMCSFCIVPFTRGRERSRPLESIVREVGELWEQGVKEVTLLGQNVNS 202

Query: 235 W----RGKGL-DGEKCT----------------------------------------FSD 249
           +       G+ +GE+ T                                        F+ 
Sbjct: 203 YCDLSNTPGIREGEEDTPDEEQRREEEKKKTKKSEAVSDVLSSGFSAIYRTNESGLRFAS 262

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
           LL  L+E    +R R+T+ HP+D  D L+    +   +   +HLPVQSGS R+L+ M R 
Sbjct: 263 LLKCLAETYPEMRFRFTSPHPKDFPDDLLLVMREQHNVCNSIHLPVQSGSSRVLERMRRG 322

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369
           +T   Y ++++RIR + P +A+SSDFI GF GET++D   T+ +V+ +GY  A+ F YS 
Sbjct: 323 YTREAYLELVERIREIIPGVALSSDFIAGFCGETEEDHLQTLSIVETVGYEMAYMFAYSM 382

Query: 370 RLGTPGSNM-LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGK 427
           R  TP     ++ V E VK  RL  L    +    +   + +G+   VLIE   K    +
Sbjct: 383 REKTPAHRHDVDDVPEEVKQRRLSELIATFKRSSAARYHSQLGKTQLVLIEAPNKRNPNE 442

Query: 428 LVGRSPWLQSVVLNS---KNHNIGDI--------IKVRITDVKISTLYGE 466
             GR    Q V  +     +H  GD+        + V+I D   ++L GE
Sbjct: 443 WGGRCDSGQKVFFSRAPVPDHQSGDLVDTKPGDYVAVKILDTTFASLRGE 492


>gi|187932620|ref|YP_001885098.1| hypothetical protein CLL_A0897 [Clostridium botulinum B str. Eklund
           17B]
 gi|187720773|gb|ACD21994.1| conserved hypothetical protein [Clostridium botulinum B str. Eklund
           17B]
          Length = 434

 Score =  229 bits (585), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 144/442 (32%), Positives = 244/442 (55%), Gaps = 20/442 (4%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  M + F  +GY   +  D AD+ V+NTC +     +K    + + R  
Sbjct: 7   TLGCRVNQYETEAMTEKFIREGYSVTDFDDFADVYVINTCTVTNMGDKKSRQIISKAR-- 64

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV- 149
                +   D ++ V GC +Q   EE+ +    V+VV+G +    +   + +AR  K + 
Sbjct: 65  -----RTNSDAIIAVVGCYSQIAPEEVSKIEG-VDVVLGTRNKGDIVYFVNKARDEKAIQ 118

Query: 150 VDTDYSVEDK-FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           V  +  + +K FE L+I +  Y  K    AFL IQ+GC++FCTFC++PY RG   S+   
Sbjct: 119 VSVNEVLRNKEFEELNIEE--YQDK--TRAFLKIQDGCNRFCTFCLIPYARGATCSKKPE 174

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYTT 267
           +V++E +KL ++G  E+ L G +  ++   G+D G   T   LL  + +I+G+ R+R  +
Sbjct: 175 KVLEEVKKLAEHGFKEVILSGIHTASY---GVDLGTGVTLISLLEDIEKIEGIDRVRIGS 231

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
             P   +D +I    ++  L P+ HL +QSGSD  LK MNRR+TA EY + +  +R    
Sbjct: 232 IEPAFFTDEVINKIKNMKKLCPHFHLSLQSGSDATLKRMNRRYTADEYAKTVQTLRDNIQ 291

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
           D++I++D IVGFPGET+++F  T + + K+   +   FKYSPR GT  + M  Q+D N+K
Sbjct: 292 DVSITTDLIVGFPGETEEEFNETYEYLKKLKLTKVHLFKYSPRKGTKAAEMPNQIDGNIK 351

Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSP-WLQSVVLNSKNH 445
            +R   L +  +E +V F    VG+ + VLIE+    K G   G +  ++++ + ++   
Sbjct: 352 DKRSKILSELNKENEVDFVKKLVGREMGVLIERECSNKPGIFEGYTKNYVKAEISDASEE 411

Query: 446 NIGDIIKVRITDVKISTLYGEL 467
            IG I+   I D + + + G++
Sbjct: 412 MIGKIMNCNIEDYEDNYIIGKI 433


>gi|303233705|ref|ZP_07320359.1| MiaB-like protein [Finegoldia magna BVS033A4]
 gi|302495139|gb|EFL54891.1| MiaB-like protein [Finegoldia magna BVS033A4]
          Length = 430

 Score =  229 bits (584), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 135/392 (34%), Positives = 221/392 (56%), Gaps = 18/392 (4%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  M ++F  +GYE  +  +  D+ VLNTC +   +  K    + +IR+ 
Sbjct: 8   TLGCKVNQYETEAMAELFVKKGYEITDDYN-CDVFVLNTCTVTNLSDRKSRQQISKIRS- 65

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
                 E  + ++ V GC +Q   +EI      VNV++G +    + EL E A+   +++
Sbjct: 66  ------ENSNAVIAVVGCYSQVSPDEI-ENIQGVNVILGTKYRKEIVELCELAKSSNKII 118

Query: 151 DTDYSV--EDKFERLSIVDGGYNRKRGVT-AFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
           +   ++    +FE L+I     N +  +T A++ IQEGC +FC++C++PY RG   SR++
Sbjct: 119 NKVENIGKNKEFEELTI-----NTEHSMTRAYIKIQEGCSQFCSYCIIPYARGPIRSRNI 173

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
             +V EA++L DNG  EI L G +V ++ GK  D +     D++  ++ I  + R+R ++
Sbjct: 174 RDIVLEAKRLADNGFKEIVLTGIHVASY-GKDFDNKDIGLIDVIEDIANIDKIKRIRLSS 232

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
             PR +    +     ++    + HL +QSGSD IL+SMNR++  + Y + I+ IR   P
Sbjct: 233 LEPRIVDKKFLDRLSQVEQFCDHFHLSLQSGSDSILQSMNRKYDTHLYERTINLIREYYP 292

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
           + AI++D IVGFPGETD+DF  T++ VDKI +++   FKYS R GT  S M  Q+   VK
Sbjct: 293 NAAITTDIIVGFPGETDEDFEQTLNFVDKIKFSKIHVFKYSNRKGTVASKMKNQIPGLVK 352

Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419
            ER   L +K +     F D  + Q I+VL E
Sbjct: 353 KERSQRLIEKSKYYTDKFLDNMLNQPIKVLFE 384


>gi|302380512|ref|ZP_07268977.1| MiaB-like protein [Finegoldia magna ACS-171-V-Col3]
 gi|302311455|gb|EFK93471.1| MiaB-like protein [Finegoldia magna ACS-171-V-Col3]
          Length = 430

 Score =  229 bits (584), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 135/392 (34%), Positives = 221/392 (56%), Gaps = 18/392 (4%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  M ++F  +GYE  +  +  D+ VLNTC +   +  K    + +IR+ 
Sbjct: 8   TLGCKVNQYETEAMAELFVKKGYEITDDYN-CDVFVLNTCTVTNLSDRKSRQQISKIRS- 65

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
                 E  + ++ V GC +Q   +EI      VNV++G +    + EL E A+   +++
Sbjct: 66  ------ENSNAVIAVVGCYSQVSPDEI-ENIQGVNVILGTKYRKEIVELCELAKSSNKII 118

Query: 151 DTDYSV--EDKFERLSIVDGGYNRKRGVT-AFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
           +   ++    +FE L+I     N +  +T A++ IQEGC +FC++C++PY RG   SR++
Sbjct: 119 NKVENIGKNKEFEELTI-----NTEHSMTRAYIKIQEGCSQFCSYCIIPYARGPIRSRNI 173

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
             +V EA++L DNG  EI L G +V ++ GK  D +     D++  ++ I  + R+R ++
Sbjct: 174 RDIVLEAKRLADNGFKEIVLTGIHVASY-GKDFDNKDIGLIDVIEDIANIDKIKRIRLSS 232

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
             PR +    +     ++    + HL +QSGSD IL+SMNR++  + Y + I+ IR   P
Sbjct: 233 LEPRIVDKKFLDRLSQVEQFCDHFHLSLQSGSDSILQSMNRKYDTHLYERTINLIREYYP 292

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
           + AI++D IVGFPGETD+DF  T++ VDKI +++   FKYS R GT  S M  Q+   VK
Sbjct: 293 NAAITTDIIVGFPGETDEDFEQTLNFVDKIKFSKIHVFKYSNRKGTVASKMKNQIPGLVK 352

Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419
            ER   L +K +     F D  + Q I+VL E
Sbjct: 353 KERSQRLIEKSKYYTDKFLDNMLNQPIKVLFE 384


>gi|312110172|ref|YP_003988488.1| RNA modification enzyme, MiaB family [Geobacillus sp. Y4.1MC1]
 gi|311215273|gb|ADP73877.1| RNA modification enzyme, MiaB family [Geobacillus sp. Y4.1MC1]
          Length = 451

 Score =  229 bits (584), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 147/447 (32%), Positives = 247/447 (55%), Gaps = 27/447 (6%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  +  +F   GYER +    AD+ V+NTC +     +K    + R    
Sbjct: 8   TLGCKVNHYETEAIWQLFKKAGYERKDFDSMADVYVINTCTVTNTGDKKSRQVIRRA--- 64

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               I+   D +V V GC AQ    E++   P V++V+G Q   ++ E +E+ +  +R +
Sbjct: 65  ----IRRNPDAVVCVTGCYAQTSPAEVMA-IPGVDIVIGTQDRGKILEYVEQFQRERRPI 119

Query: 151 DTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           +  +++     FE + + +   +R R   A L IQEGC+ FCTFC++P+ RG+  SR   
Sbjct: 120 NAVHNIMKTRVFEEMDVPEFS-DRTR---ASLKIQEGCNNFCTFCIIPWARGLMRSRDPQ 175

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE-IKGLVRLRYTT 267
           +++ +A++L++ G  EI L G +     G G D +   F+ LL  L E + GL RLR ++
Sbjct: 176 EIIRQAQQLVNAGYKEIVLTGIHTG---GYGTDMKDYNFAALLRDLDEQVVGLKRLRISS 232

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
                ++D +I      D ++ +LH+P+QSGS+ +LK M R++T   + + + R+R V P
Sbjct: 233 IEASQITDEVIDVLRRSDKIVRHLHIPLQSGSNTVLKRMRRKYTTEFFAERLARLREVFP 292

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
           ++AI+SD IVGFPGET+++F  T + V +  +++   F YS R GTP + M  QVDE+VK
Sbjct: 293 ELAITSDVIVGFPGETEEEFMETYNFVREQRFSELHVFPYSKRTGTPAARMPNQVDEDVK 352

Query: 388 AE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK---GKLVGRSPWLQSVVLN 441
            +   RL+ L  +L ++  S  +   GQ++EV+ E+  KE    G  +G +     V   
Sbjct: 353 HDRVRRLIALSDQLAKEYASQFE---GQVLEVIPEERDKENLESGLYIGYTDNYLKVRFP 409

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
           +    +G+I+KV+IT        GE V
Sbjct: 410 ATEEMVGEIVKVKITKAGYPYNEGEFV 436


>gi|89100455|ref|ZP_01173317.1| hypothetical protein B14911_05476 [Bacillus sp. NRRL B-14911]
 gi|89084798|gb|EAR63937.1| hypothetical protein B14911_05476 [Bacillus sp. NRRL B-14911]
          Length = 450

 Score =  229 bits (584), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 141/444 (31%), Positives = 245/444 (55%), Gaps = 21/444 (4%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  +  +F  +GYER +    +D+ ++NTC +     +K    + R    
Sbjct: 8   TLGCKVNHYETEAIWQLFKQEGYERTDFESASDVYIINTCTVTNTGDKKSRQVIRRA--- 64

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               I++  D ++ V GC AQ    EI+   P V++VVG Q   ++ E +E+ +  ++ +
Sbjct: 65  ----IRKNPDAVICVTGCYAQTSPAEIMA-IPGVDIVVGTQDRVKMLEYIEQYKQERQPI 119

Query: 151 DTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           +   ++     +E L  V    +R R   A L IQEGC+ FCTFC++P+ RG+  SR   
Sbjct: 120 NAVGNIMKNRVYEELD-VPAFTDRTR---ASLKIQEGCNNFCTFCIIPWARGLMRSRDPQ 175

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKGLVRLRYTT 267
           +V+ +A++L+D G  EI L G +     G G D +    + LL  L +++KGL RLR ++
Sbjct: 176 EVIRQAQQLVDAGYKEIVLTGIHTG---GYGEDMKDYNLAMLLRDLEAQVKGLKRLRISS 232

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
                ++D +I+     +V++ +LH+P+QSGS+ +LK M R++T   + + +DR++   P
Sbjct: 233 IEASQITDEVIEVMDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFAERLDRLKEALP 292

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
            +A++SD IVGFPGET+++F  T + + +  +++   F YS R GTP + M +Q+DE +K
Sbjct: 293 GLAVTSDVIVGFPGETEEEFMETYNFIKEHKFSELHVFPYSKRTGTPAARMEDQIDEEIK 352

Query: 388 AE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
            E   RL+ L  +L ++  S  +  V ++I   I K   E G  VG +     VV  +  
Sbjct: 353 NERVHRLISLSDQLAKEYASQFENEVLEVIPEEIYKEDPESGLYVGYTDNYLKVVFPASE 412

Query: 445 HNIGDIIKVRITDVKISTLYGELV 468
             +G I+KV+I+        G+ V
Sbjct: 413 EMVGKIVKVKISKAGYPFNEGQFV 436


>gi|295399226|ref|ZP_06809208.1| RNA modification enzyme, MiaB family [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|294978692|gb|EFG54288.1| RNA modification enzyme, MiaB family [Geobacillus
           thermoglucosidasius C56-YS93]
          Length = 451

 Score =  229 bits (584), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 147/447 (32%), Positives = 246/447 (55%), Gaps = 27/447 (6%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  +  +F   GYER +    AD+ V+NTC +     +K    + R    
Sbjct: 8   TLGCKVNHYETEAIWQLFKKAGYERKDFDSMADVYVINTCTVTNTGDKKSRQVIRRA--- 64

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               I+   D +V V GC AQ    E++   P V++V+G Q   ++ E +E+ +  +R +
Sbjct: 65  ----IRRNPDAVVCVTGCYAQTSPAEVMA-IPGVDIVIGTQDRGKILEYVEQFQRERRPI 119

Query: 151 DTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           +  +++     FE + + +   +R R   A L IQEGC+ FCTFC++P+ RG+  SR   
Sbjct: 120 NAVHNIMKTRVFEEMDVPEFS-DRTR---ASLKIQEGCNNFCTFCIIPWARGLMRSRDPQ 175

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE-IKGLVRLRYTT 267
           +++ +A++L++ G  EI L G +     G G D +   F+ LL  L E + GL RLR ++
Sbjct: 176 EIIRQAQQLVNAGYKEIVLTGIHTG---GYGTDMKDYNFAALLRDLDEQVVGLKRLRISS 232

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
                ++D +I      D ++ +LH+P+QSGS+ +LK M R++T   + + + R+R V P
Sbjct: 233 IEASQITDEVIDVLRRSDKIVRHLHIPLQSGSNTVLKRMRRKYTTEFFAERLARLREVFP 292

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
           ++AI+SD IVGFPGET+++F  T + V +  +++   F YS R GTP + M  QVDE VK
Sbjct: 293 ELAITSDVIVGFPGETEEEFMETYNFVREQRFSELHVFPYSKRTGTPAARMPNQVDEEVK 352

Query: 388 AE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK---GKLVGRSPWLQSVVLN 441
            +   RL+ L  +L ++  S  +   GQ++EV+ E+  KE    G  +G +     V   
Sbjct: 353 HDRVRRLIALSDQLAKEYASQFE---GQVLEVIPEERDKENLESGLYIGYTDNYLKVRFP 409

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
           +    +G+I+KV+IT        GE V
Sbjct: 410 ATEEMVGEIVKVKITKAGYPYNEGEFV 436


>gi|212638682|ref|YP_002315202.1| 2-methylthioadenine synthetase [Anoxybacillus flavithermus WK1]
 gi|212560162|gb|ACJ33217.1| 2-methylthioadenine synthetase [Anoxybacillus flavithermus WK1]
          Length = 467

 Score =  229 bits (584), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 148/447 (33%), Positives = 245/447 (54%), Gaps = 27/447 (6%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  +  +F   GYER +    AD+ V+NTC +     +K    + R    
Sbjct: 25  TLGCKVNHYETEAIWQLFKQAGYERKDFESHADVYVINTCTVTNTGDKKSRQVIRRA--- 81

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               ++   D +V V GC AQ    E++   P V++V+G Q   ++ E +E+ +  ++ +
Sbjct: 82  ----VRRNPDAVVCVTGCYAQTSPAEVMA-IPGVDIVIGTQDRGKILEYIEQFKQQRQPI 136

Query: 151 DTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           +   ++     +E L  V    +R R   A L IQEGC+ FCTFC++P+ RG+  SR   
Sbjct: 137 NGVRNIMKTRVYEELD-VPAFTDRTR---ASLKIQEGCNNFCTFCIIPWARGLMRSRDPK 192

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE-IKGLVRLRYTT 267
           +V+ +A++L+D G  EI L G +     G G D +   F+ LL  + E +KGL RLR ++
Sbjct: 193 EVIRQAQQLVDAGYKEIVLTGIHTG---GYGEDMKDYNFAMLLRDMDEQVKGLKRLRISS 249

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
                ++D +I      D ++ +LH+P+QSGS+ +LK M R++T   + + + R+R V P
Sbjct: 250 IEASQITDEVIDVLRQSDKIVRHLHIPLQSGSNAVLKRMRRKYTTEFFAERLARLREVFP 309

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
           D+A++SD IVGFPGET+++F  T + + +  +++   F YS R GTP + M +QVDE VK
Sbjct: 310 DLAVTSDVIVGFPGETEEEFMETYEFIREQRFSELHVFPYSKRTGTPAARMPDQVDEEVK 369

Query: 388 AE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE---KGKLVGRSPWLQSVVLN 441
            E   RL+ L  +L ++  S  +   GQ++EV+ E+  KE    G  VG +     V   
Sbjct: 370 NERVHRLITLSDQLAKEYASKFE---GQVLEVIPEELYKEDPASGLYVGYTDNYLKVKFP 426

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
           +    +G ++KV+IT        GE V
Sbjct: 427 ATEEMVGQLVKVKITKAGYPYNEGEFV 453


>gi|56421035|ref|YP_148353.1| hypothetical protein GK2500 [Geobacillus kaustophilus HTA426]
 gi|261418482|ref|YP_003252164.1| RNA modification enzyme, MiaB family [Geobacillus sp. Y412MC61]
 gi|319767557|ref|YP_004133058.1| RNA modification enzyme, MiaB family [Geobacillus sp. Y412MC52]
 gi|56380877|dbj|BAD76785.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
 gi|261374939|gb|ACX77682.1| RNA modification enzyme, MiaB family [Geobacillus sp. Y412MC61]
 gi|317112423|gb|ADU94915.1| RNA modification enzyme, MiaB family [Geobacillus sp. Y412MC52]
          Length = 449

 Score =  229 bits (584), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 142/445 (31%), Positives = 245/445 (55%), Gaps = 25/445 (5%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  +  +F   GYER      AD+ V+NTC +     +K    + R    
Sbjct: 8   TLGCKVNHYETEAIWQLFKKAGYERKEFESRADVYVINTCTVTNTGDKKSRQVIRRA--- 64

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               ++   D +V V GC AQ    E++   P V++V+G Q  +++ + +E+ +  ++ +
Sbjct: 65  ----VRRNPDAVVCVTGCYAQTSPAEVMA-IPGVDIVIGTQDRHKILDYIEQFQRERQPI 119

Query: 151 DTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           +  +++     FE + + +   +R R   A L IQEGC+ FCTFC++P+ RG+  SR   
Sbjct: 120 NAVHNIMKTRVFEEMDVPEFT-DRTR---ASLKIQEGCNNFCTFCIIPWARGLMRSRDPQ 175

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE-IKGLVRLRYTT 267
           +++ +AR+L+  G  EI L G +     G G D +   F+ LL  L E + GL RLR ++
Sbjct: 176 EIIRQARQLVAAGYKEIVLTGIHTG---GYGTDLKDYNFASLLRDLDEQVPGLKRLRISS 232

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
                ++D +I      + ++ +LH+P+QSGS+ +LK M R++T   Y + + R+R V P
Sbjct: 233 IEASQITDEVIDVLKRSEKIVRHLHIPLQSGSNTVLKRMRRKYTVEFYAERLARLREVFP 292

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
           ++A++SD IVGFPGET+D+F  T + + +  +++   F YS R GTP + M  Q+DE  K
Sbjct: 293 ELAVTSDVIVGFPGETEDEFMETYNFIREQRFSELHVFPYSKRTGTPAARMPNQIDEETK 352

Query: 388 AE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL-VGRSPWLQSVVLNSK 443
            +   RL+ L  +L ++  S  +   GQ++EV+ E+  KE+  L VG +     V   + 
Sbjct: 353 HDRVRRLIALSDQLAKEYASRFE---GQVLEVIPEERDKERPDLYVGYTDNYLKVRFPAT 409

Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468
              +G+++KV+IT        GE V
Sbjct: 410 EEMVGELVKVKITKAGYPYNEGEFV 434


>gi|297529334|ref|YP_003670609.1| RNA modification enzyme, MiaB family [Geobacillus sp. C56-T3]
 gi|297252586|gb|ADI26032.1| RNA modification enzyme, MiaB family [Geobacillus sp. C56-T3]
          Length = 449

 Score =  229 bits (584), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 142/445 (31%), Positives = 245/445 (55%), Gaps = 25/445 (5%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  +  +F   GYER      AD+ V+NTC +     +K    + R    
Sbjct: 8   TLGCKVNHYETEAIWQLFKKAGYERKEFESRADVYVINTCTVTNTGDKKSRQVIRRA--- 64

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               ++   D +V V GC AQ    E++   P V++V+G Q  +++ + +E+ +  ++ +
Sbjct: 65  ----VRRNPDAVVCVTGCYAQTSPAEVMA-IPGVDIVIGTQDRHKILDYIEQFQRERQPI 119

Query: 151 DTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           +  +++     FE + + +   +R R   A L IQEGC+ FCTFC++P+ RG+  SR   
Sbjct: 120 NAVHNIMKTRVFEEMDVPEFT-DRTR---ASLKIQEGCNNFCTFCIIPWARGLMRSRDPQ 175

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE-IKGLVRLRYTT 267
           +++ +AR+L+  G  EI L G +     G G D +   F+ LL  L E + GL RLR ++
Sbjct: 176 EIIRQARQLVAAGYKEIVLTGIHTG---GYGTDLKDYNFASLLRDLDEQVPGLRRLRISS 232

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
                ++D +I      + ++ +LH+P+QSGS+ +LK M R++T   Y + + R+R V P
Sbjct: 233 IEASQITDEVIDVLKRSEKIVRHLHIPLQSGSNTVLKRMRRKYTVEFYAERLARLREVFP 292

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
           ++A++SD IVGFPGET+D+F  T + + +  +++   F YS R GTP + M  Q+DE  K
Sbjct: 293 ELAVTSDVIVGFPGETEDEFMETYNFIREQRFSELHVFPYSKRTGTPAARMPNQIDEETK 352

Query: 388 AE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL-VGRSPWLQSVVLNSK 443
            +   RL+ L  +L ++  S  +   GQ++EV+ E+  KE+  L VG +     V   + 
Sbjct: 353 HDRVRRLIALSDQLAKEYASRFE---GQVLEVIPEERDKERPDLYVGYTDNYLKVRFPAT 409

Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468
              +G+++KV+IT        GE V
Sbjct: 410 EEMVGELVKVKITKAGYPYNEGEFV 434


>gi|222151475|ref|YP_002560631.1| hypothetical protein MCCL_1228 [Macrococcus caseolyticus JCSC5402]
 gi|222120600|dbj|BAH17935.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
          Length = 448

 Score =  229 bits (584), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 138/430 (32%), Positives = 238/430 (55%), Gaps = 23/430 (5%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  +  +F    YERV+   +AD+ V+NTC +     +K    + R    
Sbjct: 8   TLGCKVNHYETEAIWQLFKDADYERVDFEQNADVYVINTCTVTNTGDKKSRQVIRRA--- 64

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               I+   D ++ V GC AQ    EI+  +  V++VVG Q  +++   +E+ R  ++ +
Sbjct: 65  ----IRRNPDAVICVTGCYAQTSSAEIMDIAG-VDIVVGTQDRHKMLPYIEQYRAERQPI 119

Query: 151 D--TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           +  T+      +E L   D  Y   R   A L IQEGC+ FCTFC++P+ RG+  SR   
Sbjct: 120 NGVTNIMKNRTYEEL---DVPYFTDR-TRASLKIQEGCNNFCTFCIIPWARGLMRSRDPK 175

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
           +VV +A +L+ +G  EI L G +     G G D +    + LL  L  I GL R+R ++ 
Sbjct: 176 EVVRQATQLVQSGYQEIVLTGIHTG---GYGEDLKDYNLAQLLRDLETIDGLKRIRISSI 232

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
               ++D +I      + ++ +LH+P+QSGSD +LK M R++T   + + + ++ ++ P 
Sbjct: 233 EASQLTDEVIDVIDKSNKVVRHLHIPLQSGSDTVLKRMRRKYTMSHFSERLKKLHAIMPG 292

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           +A++SD IVGFPGET+++F+ T D + + G+++   F YS R GTP + M +Q+DE++K 
Sbjct: 293 LAVTSDVIVGFPGETEEEFQETYDFILQHGFSELHVFPYSMRTGTPAARMTDQIDESIKN 352

Query: 389 E---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445
           +   RL+ L  +L ++  S  +   G ++EV+ E+       LVG +     V   +  H
Sbjct: 353 DRVHRLITLSDQLAKEYASRFE---GDVLEVIPEEKASNGNMLVGYTDNYLKVQFEADEH 409

Query: 446 NIGDIIKVRI 455
            IG+++KV+I
Sbjct: 410 LIGELVKVKI 419


>gi|297588452|ref|ZP_06947095.1| 2-methylthioadenine synthetase [Finegoldia magna ATCC 53516]
 gi|297573825|gb|EFH92546.1| 2-methylthioadenine synthetase [Finegoldia magna ATCC 53516]
          Length = 430

 Score =  229 bits (583), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 138/390 (35%), Positives = 217/390 (55%), Gaps = 18/390 (4%)

Query: 33  GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92
           GC++N Y++  M ++F   GYE +    + D+ VLNTC +   +  K    + +IR+   
Sbjct: 10  GCKVNQYETEAMAELFVKNGYE-ITEDYNCDVFVLNTCTVTNLSDRKSRQQISKIRS--- 65

Query: 93  SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDT 152
               E  D ++ V GC +Q   +EI      VNV++G +    + EL E A+   ++++ 
Sbjct: 66  ----ENSDAIIAVVGCYSQVSPDEI-ENIEGVNVILGTKYRKEIVELCELAQSSNKIINK 120

Query: 153 DYSV--EDKFERLSIVDGGYNRKRGVT-AFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209
             S+    +FE L+I     N +  +T +++ IQEGC +FC++C++PY RG   SR++  
Sbjct: 121 VESIGKNREFEELTI-----NTEHSMTRSYIKIQEGCSQFCSYCIIPYARGPIRSRNIRD 175

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSH 269
           +V EA++L DNG  EI L G +V ++ GK LD       D++  + +I  + R+R ++  
Sbjct: 176 IVLEAKRLSDNGFKEIVLTGIHVASY-GKDLDNNDIGLIDVIEDIGQIDKIKRIRLSSLE 234

Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329
           PR +    +     ++    + HL +QSGSD IL+SMNR++    Y + I+ IR   P+ 
Sbjct: 235 PRIVDKQFLDRLSKVEQFCDHFHLSLQSGSDSILESMNRKYDTDLYEKTINLIREYYPNA 294

Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAE 389
           AI++D IVGFPGETD+DF  T+  VDKI +++   FKYS R GT  S M  QV   VK E
Sbjct: 295 AITTDIIVGFPGETDEDFEQTLSFVDKIQFSKIHVFKYSNRKGTVASKMKNQVSGVVKKE 354

Query: 390 RLLCLQKKLREQQVSFNDACVGQIIEVLIE 419
           R   L +K +     F D  + Q I+VL E
Sbjct: 355 RSKLLIEKSKYYTDKFLDNMLNQPIKVLFE 384


>gi|56963428|ref|YP_175159.1| 2-methylthioadenine synthetase [Bacillus clausii KSM-K16]
 gi|56909671|dbj|BAD64198.1| 2-methylthioadenine synthetase [Bacillus clausii KSM-K16]
          Length = 445

 Score =  229 bits (583), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 141/443 (31%), Positives = 242/443 (54%), Gaps = 20/443 (4%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  +  +F  +GYE+V     AD+ V+NTC +     +K    + R    
Sbjct: 8   TLGCKVNHYETEAIWQLFKQEGYEKVEFEQTADVYVINTCTVTNTGDKKSRQVIRRA--- 64

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               I++  D ++ V GC AQ    E++   P V++VVG Q   ++   +++ +  ++ +
Sbjct: 65  ----IRKNPDAVICVTGCYAQTSPAEVMA-IPGVDIVVGTQDRSKMLGYIDQYKKERQPI 119

Query: 151 DTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           +   ++     +E L  V    +R R   A L IQEGC+ FCTFC++P+ RG+  SR   
Sbjct: 120 NAVGNIMKSRVYEELD-VPSFTDRTR---ASLKIQEGCNNFCTFCIIPWARGLMRSRDPQ 175

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
           +VV +A++L+  G  EI L G +     G G D +  + + LL  L +++GL RLR ++ 
Sbjct: 176 EVVRQAQQLVHAGYKEIVLTGIHTG---GYGEDLKDYSLARLLEDLEKVEGLKRLRISSI 232

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
               ++D +I   G    ++ ++H+P+QSGSD +LK M R++T   Y + I++++   P 
Sbjct: 233 EASQLTDEVIAVIGKSSKVVRHMHIPLQSGSDTVLKRMRRKYTMAAYEERIEKLKQALPR 292

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           +AI+SD IVGFPGET+++F+ T D + K  +++   F YS R GTP + M +Q+DE +K 
Sbjct: 293 LAITSDVIVGFPGETEEEFQETYDFIAKHKFSELHVFPYSMRTGTPAARMTDQIDEAIKN 352

Query: 389 E---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445
           E   RL+ L  +L ++  S  +  V ++I    +K   E G  VG +     V L +   
Sbjct: 353 ERVHRLIELSNQLAKEYASSFENEVLEVIPEERDKDNPESGLFVGYTDNYLKVKLEADET 412

Query: 446 NIGDIIKVRITDVKISTLYGELV 468
            IG +++V+I +       GE V
Sbjct: 413 MIGKLVRVKIKEAGYPYNRGEFV 435


>gi|121534805|ref|ZP_01666625.1| RNA modification enzyme, MiaB family [Thermosinus carboxydivorans
           Nor1]
 gi|121306600|gb|EAX47522.1| RNA modification enzyme, MiaB family [Thermosinus carboxydivorans
           Nor1]
          Length = 432

 Score =  229 bits (583), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 143/402 (35%), Positives = 225/402 (55%), Gaps = 23/402 (5%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC---HIREKAAEK 79
           +P+  F  + GC++N +++  +E +F  +GY  V+  + AD+ V+NTC   H+ EK + +
Sbjct: 1   MPRAAFT-TLGCKVNQFETEVIEGLFKQRGYTIVSFDEPADVYVINTCSVTHLGEKKSRQ 59

Query: 80  VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL 139
           +     R+            + ++V  GC AQ   +++    P V+V+VG Q   R+ +L
Sbjct: 60  LIRRAARVNP----------EAVIVATGCYAQVSPDKVAA-IPGVDVIVGTQDRGRIVDL 108

Query: 140 LERARFGKRVVD--TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197
           +E AR  +  V+  TD    ++FE + I D    R R   AFL IQEGC  FCT+C++PY
Sbjct: 109 VEEARRTRGQVNAVTDIMEAEQFEDIPIFDAP-GRTR---AFLKIQEGCTNFCTYCIIPY 164

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257
            RG   SRSL  V  EA KLI  G  EI L G ++ A+ G+ + G+    +D + ++  +
Sbjct: 165 ARGPLRSRSLDSVKREAEKLIATGFKEIVLTGIHLGAY-GRDM-GDGLELADAVETVLSV 222

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
            GLVRLR ++    ++SD L+        L P+LHLP+Q+G D +L  MNR +T  EY +
Sbjct: 223 AGLVRLRLSSLESVEVSDRLVALMRRDAKLCPHLHLPLQAGDDHVLSQMNRHYTTEEYSR 282

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
           ++  IR   PD+A+++D IVGFPGET   F  ++  V+++ +A+   F YS R GTP + 
Sbjct: 283 LVGDIRRRVPDLAVTTDVIVGFPGETPTMFANSLAFVERMAFAKVHIFPYSRRSGTPAAT 342

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419
              QV E  K  R+  +Q+   +   +F  A VG+ +EVL E
Sbjct: 343 YPNQVPEEEKKRRVREMQRVAEKGAAAFLAAFVGREMEVLFE 384


>gi|289423896|ref|ZP_06425689.1| conserved hypothetical protein [Peptostreptococcus anaerobius
           653-L]
 gi|289155673|gb|EFD04345.1| conserved hypothetical protein [Peptostreptococcus anaerobius
           653-L]
          Length = 442

 Score =  228 bits (582), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 145/441 (32%), Positives = 243/441 (55%), Gaps = 24/441 (5%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  M +MF  +GY  V S + AD+ V+NTC +   +  K   ++ R++  
Sbjct: 8   TLGCKVNQYETEAMLEMFEKKGYTNVGSEEYADVYVINTCTVTHMSDRKSRQYIRRVK-- 65

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
                K+    ++ V GC +Q   EEIL     VN+V+G      + + +E      ++ 
Sbjct: 66  -----KKNPKSIIAVVGCYSQVSPEEILEIED-VNLVMGTNDRRTIVDRIEELDSNSKLS 119

Query: 151 DTDYSVE-DKFERLSIV-DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
             D  ++  +FE + I  + G  R     AF+ IQ+GCD++CT+C++PY RG   SR++ 
Sbjct: 120 TVDDIMKVREFESIEISQNNGKTR-----AFIKIQDGCDRYCTYCIIPYARGRIRSRNID 174

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
           ++ +E   L +NG  E+ L G +V ++ GK L  E     D++ ++++I G+ R+R ++ 
Sbjct: 175 EIREEIITLANNGYKEVVLTGIHVASY-GKDL-KEDIGILDVIKAVNDIDGIERIRLSSV 232

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
            P   +D  I     +D L+P+ HL +QSG+D  LK MNRR+TA EY++ +D +R    D
Sbjct: 233 EPVLFTDEFIDEICKIDKLVPHFHLSLQSGTDSTLKRMNRRYTAAEYKRTVDTLRDRIKD 292

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK- 387
           + +++D IVGFPGET++DF  T+  + +I       FKYSPR GTP ++M +QVD   K 
Sbjct: 293 VMLTTDVIVGFPGETNEDFSETLRFLKEIKLMHMHVFKYSPRKGTPAASMKDQVDPQAKQ 352

Query: 388 --AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445
             ++ LL L KK  ++     +  +G+ + VL E+  KE G   G S     + + S   
Sbjct: 353 FRSDALLNLSKKNFKENT---EKYIGRPLNVLFEEVDKE-GYYEGLSDNYIRIKVKSDKD 408

Query: 446 NIGDIIKVRITDVKISTLYGE 466
             G I++ +I D++     GE
Sbjct: 409 IRGQILEAKIVDIRDDYCIGE 429


>gi|258645469|ref|ZP_05732938.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Dialister invisus DSM
           15470]
 gi|260402822|gb|EEW96369.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Dialister invisus DSM
           15470]
          Length = 447

 Score =  228 bits (582), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 135/391 (34%), Positives = 216/391 (55%), Gaps = 17/391 (4%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N YDS  M  +F   GY+     ++AD+ V+NTC +      K    + RIR  
Sbjct: 17  TLGCKVNQYDSDAMRSLFIRNGYKVAKENENADVYVINTCSVTSIGDRKSRQMVRRIR-- 74

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
                +E    ++  AGC AQ    ++  +   V+V+VG Q    + E +E A   K+ +
Sbjct: 75  -----REHPGAVIAAAGCYAQL-APDVFVQMGDVDVIVGIQNRSHIVEYVEEAAAEKKTL 128

Query: 151 DT--DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           +   D      FE LS+   G  + R   AF+ IQEGCD +CTFC++P+ RG   SR  S
Sbjct: 129 NAVGDIMAVTDFENLSVDAEGEVKTR---AFIKIQEGCDNYCTFCIIPFARGKLKSRRQS 185

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGL-DGEKCTFSDLLYSLSEIKGLVRLRYTT 267
             V+E R+L++ G  E+ L G ++  + GK L DG   + S L+  L  I  L+R+R  +
Sbjct: 186 DAVEEIRRLVEKGYREVVLTGIHLGNY-GKDLHDG--TSLSTLVTELVRIPDLLRIRLGS 242

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
               ++SD LI+   +   + P+LHLP+Q+GSD ILK MNR +   EY+++I  +R   P
Sbjct: 243 IESVELSDELIRIIREEPKVCPHLHLPIQAGSDDILKRMNRHYRLAEYKELIRNLRKEIP 302

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
            +A+++D IVGFPGET+++FR T+D + ++ ++    F YSPR GTP +    QV   +K
Sbjct: 303 GLALTTDLIVGFPGETEENFRETLDTLQELQFSAIHVFPYSPRKGTPAAAYPNQVKPEIK 362

Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLI 418
            ER   +Q   +E   ++ +    +++ VL+
Sbjct: 363 KERAARVQALGKELAGAYRNQFFHKMVRVLV 393


>gi|241560240|ref|XP_002400838.1| CDK5 regulatory subunit-associated protein, putative [Ixodes
           scapularis]
 gi|215499787|gb|EEC09281.1| CDK5 regulatory subunit-associated protein, putative [Ixodes
           scapularis]
          Length = 547

 Score =  228 bits (580), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 148/480 (30%), Positives = 248/480 (51%), Gaps = 45/480 (9%)

Query: 28  FVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRI 87
           + ++YGCQMNV D+     +  S G+ +   ++ AD++++ TC IRE A  K++S + ++
Sbjct: 48  YFETYGCQMNVNDTEVAWSVLKSAGFTKTEDVNVADVVLIMTCAIREGAESKIWSRINQL 107

Query: 88  RNLKNSRIKEG-GDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           + LK +R +   G + + + GC+A+   E+++ R   V++V GP +Y  LP LL  A  G
Sbjct: 108 KALKKARRRSSRGPMQIGILGCMAERLKEKLVEREKEVDIVAGPDSYRDLPRLLRVATSG 167

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           +  V+   S+++ +  +  V    N K   +A+++I  GC+  CT+C+VP+TRG E SR 
Sbjct: 168 QVGVNVLLSLDETYADVVPVRLTENAK---SAYVSIMRGCNNMCTYCIVPFTRGRERSRP 224

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK---------------------- 244
           ++ ++DE R L + GV E+ LLGQNVN++R    + +                       
Sbjct: 225 VTSILDEVRALSEQGVKEVILLGQNVNSYRDTSAESQALIARPAPGDVLLSRGFRTVYKT 284

Query: 245 ----CTFSDLLYSLSEIKGLVRLRYTT-SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
                 F DLL  +S++   +R+R+T  ++ R     +++   D   +   +HLP QSG+
Sbjct: 285 QLGGVRFVDLLDRVSQVDPEMRIRFTCRANARTYGGRVLEVIQDRHNICKQIHLPAQSGN 344

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
            R+L++M R +T   Y  ++  IR+  PD+A++SDFI GF GET++  R T+ LV+ + Y
Sbjct: 345 SRVLETMRRGYTREAYLDLVAHIRTFLPDVALTSDFICGFCGETEEAHRDTLSLVEAVQY 404

Query: 360 AQAFSFKYSPRLGTPGSNMLE-QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI 418
             A+ F YS R  T     LE  V   VK  R+  +    R +    +D  VG +  VL+
Sbjct: 405 DMAYVFPYSLREKTHAHRRLEDDVPLEVKKRRVAEVLAVFRRRVKQLHDKQVGSLQLVLV 464

Query: 419 EKHGKEKGK-LVGRSP------WLQSVVLNSKNHNI------GDIIKVRITDVKISTLYG 465
           E   +     L GR+       + QS++  S    +      GD + V I D     L G
Sbjct: 465 EGVSRRSAADLAGRNDNNTKVIFPQSLIPESSGSTVRREVQPGDYVVVEINDCTSQVLKG 524


>gi|219116801|ref|XP_002179195.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217409086|gb|EEC49018.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 516

 Score =  228 bits (580), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 148/453 (32%), Positives = 242/453 (53%), Gaps = 59/453 (13%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P +F ++++GCQMNV DS  +  +   +G+       DAD+++ NTC IRE A +KV+  
Sbjct: 3   PFKFHLRTFGCQMNVNDSDIVRALLLERGFTETLDETDADVLLTNTCAIREGAEQKVWHR 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL--- 140
           L  +R    SR       +V V GC+A+    ++ R   + ++VVGP  Y  LP L+   
Sbjct: 63  LRELRGKFKSRK------VVGVLGCMAERLQTDLFRDG-LADLVVGPDAYRDLPRLMRDL 115

Query: 141 ------ERARFGK--RVVDTDYSVEDKFERLSIVDGGYNRKRG--VTAFLTIQEGCDKFC 190
                 + A  G+  +  +   S+++ +  ++ V     R+ G  V+AF++IQ GC   C
Sbjct: 116 LREPDDDDAELGRVNQAFNVQLSLDETYADVTPV-----RRHGNSVSAFVSIQRGCANRC 170

Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL---------- 240
           +FC+VP+TRG E SR  + VV E ++L + GV E+TLLGQNVN++               
Sbjct: 171 SFCIVPFTRGQERSRPFASVVGEIQQLYEQGVKEVTLLGQNVNSYHDTSETALSVRPDSG 230

Query: 241 -----DGEKCT---------FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV 286
                DG +           F+DL+ ++S+I   +R+R+T+ HP+D    L+    +   
Sbjct: 231 YRMSNDGFRSRIRRHDGGYYFADLVAAVSDISSELRVRFTSPHPKDYPPPLLTLMAERPN 290

Query: 287 LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDD 346
           +  +LH+P QSGS  +L+ M R ++   Y +++D +  + PD+AISSDFI GF  E++++
Sbjct: 291 VCNHLHMPAQSGSTSMLQRMKRGYSREAYLELMDTVHEIIPDVAISSDFIAGFCDESEEE 350

Query: 347 FRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQVDENVKAERLL----CLQKKLREQ 401
              T+ L++++ Y QAF F YS R  T     M + V E+VK  RL+      Q+ ++E+
Sbjct: 351 HLDTLSLMERVRYDQAFMFAYSMRGKTHAHRTMQDNVPEDVKKRRLIEIIDTFQRHVQEK 410

Query: 402 QVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPW 434
             S     VG++  VL+E  G+ K    G   W
Sbjct: 411 NESLE---VGRLRLVLVE--GESKRSHPGARAW 438


>gi|153853286|ref|ZP_01994695.1| hypothetical protein DORLON_00681 [Dorea longicatena DSM 13814]
 gi|149754072|gb|EDM64003.1| hypothetical protein DORLON_00681 [Dorea longicatena DSM 13814]
          Length = 440

 Score =  227 bits (579), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 152/456 (33%), Positives = 242/456 (53%), Gaps = 33/456 (7%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC-HIREKAAEKVYSFLG 85
           FFV S GC  N+ DS  M  +  ++GY+ V+    AD++V+NTC  I +   E + + L 
Sbjct: 4   FFV-SLGCDKNLVDSEVMLGLLDAKGYQIVDDETLADVMVINTCCFIHDAKEESIQTILD 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
             R  +  R+K      +VV GC+AQ   +EI+   P V+VV+G  +Y ++ E +E A  
Sbjct: 63  MARYKEEGRLK-----ALVVTGCLAQRYKQEIIDEIPEVDVVLGTTSYDKIVEAVEEALE 117

Query: 146 GK---RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           GK    + D +     + +RL    G Y       A+L I EGCDK CT+C++P  RG  
Sbjct: 118 GKSEVELADINALPLPETKRLVTTGGHY-------AYLKIAEGCDKHCTYCIIPKVRGNY 170

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            S  + +++ EA++L D GV E+ L+ Q    + G+ + GEK +   LL  L +IKG+  
Sbjct: 171 RSVPMERLIKEAQELADQGVKELILVAQETTVY-GQDIYGEK-SLHKLLKELCQIKGIRW 228

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R    +P ++ D LI+   +   +  YL LP+Q  SD ILK M RR +  +    I ++
Sbjct: 229 IRLLYCYPEEIDDNLIQVMKEEPKICHYLDLPIQHASDAILKRMGRRTSKQQLIDTITKL 288

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R   PDIA+ +  I GFPGET +     M+ VD++ + +   F YSP   TP + M +Q+
Sbjct: 289 RKEIPDIALRTTLITGFPGETQEQHEEVMEFVDEMEFERLGVFTYSPEEDTPAATMPDQI 348

Query: 383 DENVKAERLLCLQKKLRE--QQVSFNDA--CVGQIIEVLIEKHGKEKGKLVGRS----PW 434
           DE VK +R    Q  + E  Q++ F+ A   +G+ + V+IE    ++   VGR+    P 
Sbjct: 349 DEEVKEDR----QADIMELQQEIVFDQAEDMIGKEVLVMIEGKVADENAYVGRTYRDAPN 404

Query: 435 LQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468
           +  ++  + +  +  GD  KV++T      L GEL+
Sbjct: 405 VDGLIFVNTDEELMTGDFAKVKVTGAAEYDLIGELI 440


>gi|311031621|ref|ZP_07709711.1| ribosomal protein S12 methylthiotransferase [Bacillus sp. m3-13]
          Length = 454

 Score =  227 bits (579), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 142/444 (31%), Positives = 242/444 (54%), Gaps = 21/444 (4%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  +  +F +  YER      AD+ V+NTC +     +K    + R    
Sbjct: 8   TLGCKVNHYETEAIWQLFKANNYERTEFEGTADVYVINTCTVTNTGDKKSRQVIRRA--- 64

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               I++  D ++ V GC AQ    EI+   P V+VVVG Q   ++ + +E+ +  ++ +
Sbjct: 65  ----IRKNPDAVICVTGCYAQTSPAEIMA-IPGVDVVVGTQDRVKMLDYIEQFKQERQPI 119

Query: 151 DTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           +   ++     +E L  V    +R R   A L IQEGC+ FCTFC++P+ RG+  SR   
Sbjct: 120 NGVGNIMKARVYEELD-VPAFTDRTR---ASLKIQEGCNNFCTFCIIPWARGLMRSRDPQ 175

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE-IKGLVRLRYTT 267
           +VV +A++L+D G  EI L G +     G G D +   F+ LL  L E ++GL R+R ++
Sbjct: 176 EVVTQAQQLVDAGYKEIVLTGIHTG---GYGEDMKDYNFAMLLRELDEKVEGLKRIRISS 232

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
                ++D +I+   + D ++ +LH+P+QS S+ +LK M R++T   + + +DR++   P
Sbjct: 233 IEASQITDEVIEVLNNSDKIVRHLHIPIQSASNTVLKRMRRKYTMEFFAERLDRLKEALP 292

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
            +AI+SD IVGFPGET+++F  T + + +  +++   F YS R GTP + M +QVDE +K
Sbjct: 293 GLAITSDVIVGFPGETEEEFMETYNFIKEHKFSELHVFPYSKRTGTPAARMTDQVDEEMK 352

Query: 388 AE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
            E   RL+ L  +L ++  S  +  V ++I   I K   ++G  VG +     VV  +  
Sbjct: 353 NERVHRLIALSDQLAKEYASTFEEEVLEVIPEEIYKEAPDQGLYVGYTDNYLKVVFPATE 412

Query: 445 HNIGDIIKVRITDVKISTLYGELV 468
             +G ++KV+I         G+ V
Sbjct: 413 EMVGKLVKVKIAKAGYPYNEGQFV 436


>gi|15613914|ref|NP_242217.1| hypothetical protein BH1351 [Bacillus halodurans C-125]
 gi|10173967|dbj|BAB05070.1| BH1351 [Bacillus halodurans C-125]
          Length = 448

 Score =  227 bits (579), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 143/447 (31%), Positives = 249/447 (55%), Gaps = 26/447 (5%)

Query: 30  KSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRN 89
           ++ GC++N Y++  +  +F  +GYE+V+    AD+ V+NTC +     +K    + R   
Sbjct: 7   QTLGCKVNHYETEAIWQLFKGEGYEKVDFEQMADVYVINTCTVTNTGDKKSRQVIRRA-- 64

Query: 90  LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149
                I++  D ++ V GC AQ    E++   P V++VVG Q   ++ E +E+ +  ++ 
Sbjct: 65  -----IRKNPDAVICVTGCYAQTSPAEVMA-IPGVDIVVGTQDRKKMLEYIEQYKKERQP 118

Query: 150 VDTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
           ++   ++     +E L  V    +R R   A L IQEGC+ FCTFC++P+ RG+  SR  
Sbjct: 119 INGVGNIMKSRVYEELD-VPAFTDRTR---ASLKIQEGCNNFCTFCIIPWARGLMRSRDP 174

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
            +V+ +A +L+  G  EI L G +     G G D +  + + LL  L ++ GL R+R ++
Sbjct: 175 KEVIKQAEQLVQAGYKEIVLTGIHTG---GYGEDLKDYSLARLLEDLEQVNGLKRIRISS 231

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
                ++D +I+       ++ +LH+P+QSGSD +LK M R++T   + + ++R+R   P
Sbjct: 232 IEASQLTDEVIEVIDRSTKVVRHLHIPLQSGSDTVLKRMRRKYTMAFFAERLERLREALP 291

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
            +A++SD IVGFPGET+ +F+ T D + K  +++   F YS R GTP + M +QV+E+VK
Sbjct: 292 GLAVTSDVIVGFPGETEAEFQETYDFIAKHKFSELHVFPYSKRTGTPAARMEDQVNEDVK 351

Query: 388 AE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK---GKLVGRSPWLQSVVLN 441
            E   RL+ L  +L ++  S  +   G+++E++ E+  KE+   G  VG +     V + 
Sbjct: 352 NERVHRLIQLSDQLAKEYASQFE---GEVLEMIPEERDKEEPNSGLYVGYTDNYLKVKIP 408

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
           + +  IG ++KV+IT        GE V
Sbjct: 409 ATDEMIGKLVKVKITKAGYPYNEGEFV 435


>gi|325183820|emb|CCA18278.1| CDK5 regulatory subunitassociated protein 1 putativ [Albugo
           laibachii Nc14]
 gi|325183990|emb|CCA18448.1| CDK5 regulatory subunitassociated protein 1 putativ [Albugo
           laibachii Nc14]
          Length = 639

 Score =  227 bits (579), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 133/395 (33%), Positives = 219/395 (55%), Gaps = 31/395 (7%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + F++++YGCQMN  DS  +  +    GY+   + +DAD+I+LNTC IRE A  K+++ L
Sbjct: 95  KNFYIETYGCQMNTADSEIVHAILVKNGYQLAKNPEDADVILLNTCAIRENAESKIWNRL 154

Query: 85  GRIRNLKNS--RIKEGGDLL--VVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140
            + R +K    R K   + L  V V GC+A+    ++L    +V++VVGP  Y  LP LL
Sbjct: 155 EQWRQIKVKLLRHKSTRNHLPTVGVLGCMAERLKTKLLECDKMVDLVVGPDAYRDLPNLL 214

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           +  R G+  V+   S+++ +  +  V    +     +AF++I  GC+  C++C+VP+TRG
Sbjct: 215 QVVRGGQSAVNVQLSLDETYAGIVPVRSDPSNP---SAFVSIMRGCNNMCSYCIVPFTRG 271

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-------------GLDGEKCTF 247
            E S  L  ++ E + L D GV EI LLGQNVN++  K               +G K  F
Sbjct: 272 RERSCELESIISEVKSLRDQGVKEIMLLGQNVNSYHDKQSQQAQEKGRAYVSANGFKNMF 331

Query: 248 S----------DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQS 297
                      D+L  +S++   +R+R+T+ HP+D  D ++    +   +   +H+P QS
Sbjct: 332 KARNATGFRFVDVLDHVSQVDSEMRIRFTSPHPKDFPDDVLDLIQERHNICNSVHMPAQS 391

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
           GS  +L+ M R ++   Y  + + +R+  P ++ISSDFI GF GET+++ + T+ L+ ++
Sbjct: 392 GSTTVLERMRRGYSREAYLALAENMRTRIPGVSISSDFITGFCGETEEEHQDTLTLIQRV 451

Query: 358 GYAQAFSFKYSPRLGTPGSNMLE-QVDENVKAERL 391
            + QAF F YS R  T  ++ +E  V + VK  RL
Sbjct: 452 CFDQAFMFTYSLRAKTHAAHRMEDNVPQEVKLRRL 486


>gi|224541752|ref|ZP_03682291.1| hypothetical protein CATMIT_00924 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525356|gb|EEF94461.1| hypothetical protein CATMIT_00924 [Catenibacterium mitsuokai DSM
           15897]
          Length = 435

 Score =  227 bits (579), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 148/430 (34%), Positives = 238/430 (55%), Gaps = 20/430 (4%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y+S  M ++F  +GYE ++    AD+ V+NTC +      K        R +
Sbjct: 8   TLGCKVNSYESEAMLEIFKKRGYETIDFESPADVYVINTCTVTNTGDSKS-------RQM 60

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR-FGKRV 149
                +   + ++ V GC +Q   EEI      V+VV+G Q    + + +E  +   K++
Sbjct: 61  IRKAHRTNPEAVICVVGCYSQVASEEITGIEG-VSVVLGTQHRASIVDFVEEYKSTHKQI 119

Query: 150 VDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           V  +  ++  +FE LSI     N+ R   AFL IQ+GC+ FCT+C++PY RG   SR   
Sbjct: 120 VKIENVMKVSRFEDLSI-HAFENKTR---AFLKIQDGCNNFCTYCIIPYARGGVRSRPKE 175

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS-EIKGLVRLRYTT 267
            V+ +A++L+D G  EI L G +     G G+D E  +F DLL  L+ +IKGL RLR ++
Sbjct: 176 DVLRQAQELVDRGFVEIVLTGIHTA---GYGVDLENYSFYDLLVDLTTKIKGLKRLRISS 232

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
                +SD +I+  G   +++ +LH+P+QSG+D IL+ M R +   E+ +    ++   P
Sbjct: 233 IEMSQVSDEIIELIGKSPIIVDHLHIPIQSGTDSILRRMARHYNTAEFEKKYFELKEALP 292

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
            I+I++D IVGFPGET++DF  T + + K+ + Q   F YS R GTP   M  QV  +VK
Sbjct: 293 GISITTDVIVGFPGETEEDFVDTYNWIKKLHFNQLHVFPYSRRRGTPADRMPSQVPGDVK 352

Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNI 447
            ER+  L K   E +  F  + + + +EVLIE+  ++ G +VG +     V++   +   
Sbjct: 353 KERVRRLLKLSDELKTEFALSEMNKELEVLIEE--EKDGYMVGHASNYLKVLVADTSLKE 410

Query: 448 GDIIKVRITD 457
           G I KV++TD
Sbjct: 411 GHIYKVKVTD 420


>gi|91088221|ref|XP_973511.1| PREDICTED: similar to CG6345 CG6345-PA [Tribolium castaneum]
 gi|270011824|gb|EFA08272.1| hypothetical protein TcasGA2_TC005903 [Tribolium castaneum]
          Length = 610

 Score =  227 bits (578), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 143/476 (30%), Positives = 241/476 (50%), Gaps = 38/476 (7%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ +   YGCQMNV D+  +  +     Y + +++ +AD++++ TC IRE A  K++  L
Sbjct: 111 RKVYFDVYGCQMNVNDTEIIWSILQKHNYLKTSNLLEADVVLIVTCAIREGAESKIWGRL 170

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             +R +  S+        V V GC+A+    ++L ++  V++V GP  Y  LP LL    
Sbjct: 171 EYLRGINKSKATFSSRFKVGVLGCMAERLKHKVLEKNKTVDLVAGPDAYRDLPRLLALTE 230

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
             ++ V+   S ++ +  +  V    N    V+AF++I  GCD  CT+C+VP+TRG E S
Sbjct: 231 NDQKSVNVLLSFDETYADIMPVRLNEN---SVSAFVSIMRGCDNMCTYCIVPFTRGKERS 287

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT------------------ 246
           R +  ++ E   L   GV E+TLLGQNVN++R     G+                     
Sbjct: 288 RPVDSILREIELLSQQGVKEVTLLGQNVNSYRDLSNSGDIFINNQTNLAKGFKTVYKSKI 347

Query: 247 ----FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
               F+ LL  ++++   +R+R+T+ HP+D  D ++        +   LH+P QSG+  +
Sbjct: 348 GGRRFAHLLEKVADVNPEMRIRFTSPHPKDFPDEVLHVIKSRPNICKNLHMPAQSGNTNV 407

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           L+ M R +T   Y +++D IR + P++++SSDFI GF GET+++F  T+ L++ + Y  A
Sbjct: 408 LERMRRGYTREAYIELVDHIRYLLPEVSLSSDFICGFCGETEEEFEDTISLMEMVQYNNA 467

Query: 363 FSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKH 421
           + F YS R  T       + V   VK +RL  + +  R      N A +G++  +LIE  
Sbjct: 468 YLFPYSMREKTAAHRRYTDDVPAEVKQKRLERMIQTFRFYAEKLNRAQIGRLQLILIEGF 527

Query: 422 G-KEKGKLVGRSPWLQSVVL-----------NSKNHNIGDIIKVRITDVKISTLYG 465
             + + +L GR+     VV+           +SK    GD + V+I       L G
Sbjct: 528 SRRSRNQLAGRNDQNIKVVIPAGEVPQKDGRSSKELGPGDYVVVQINAANSQILKG 583


>gi|157693043|ref|YP_001487505.1| 2-methylthioadenine synthetase [Bacillus pumilus SAFR-032]
 gi|157681801|gb|ABV62945.1| 2-methylthioadenine synthetase [Bacillus pumilus SAFR-032]
          Length = 453

 Score =  227 bits (578), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 150/448 (33%), Positives = 243/448 (54%), Gaps = 28/448 (6%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  +  +F   GYER      AD+ V+NTC +     +K    + R    
Sbjct: 9   TLGCKVNHYETEAIWQLFKEAGYERKEYESKADVYVINTCTVTNTGDKKSRQVIRRA--- 65

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               I+   D ++ V GC AQ    EI+   P V++VVG Q  ++L   +E  R  ++ +
Sbjct: 66  ----IRHNPDGVICVTGCYAQTSPAEIMA-IPGVDIVVGTQDRHKLLGYIEEFRRERQPI 120

Query: 151 DTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           +   ++     FE L  V    +R R   A L IQEGC+ FCTFC++P+ RG+  SR   
Sbjct: 121 NGVGNIMKARVFEELD-VPAFTDRTR---ASLKIQEGCNNFCTFCIIPWARGLLRSRDPE 176

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE-IKGLVRLRYTT 267
           +V+++A++L+D G  EI L G +     G G D +   F+ LL  L E + GL R+R ++
Sbjct: 177 EVINQAQQLVDAGYKEIVLTGIHTG---GYGEDLKDYNFAKLLKELDERVNGLKRIRISS 233

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
                ++D +I+     D ++ +LH+P+QSGS+ +LK M R++T   + + + +++   P
Sbjct: 234 IEASQITDEVIEVLDQSDKIVRHLHIPLQSGSNTVLKRMRRKYTMEFFAERLTKLKKALP 293

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
            +A++SD IVGFPGET+++F  T + V    +++   F YS R GTP + M +QVDENVK
Sbjct: 294 GLAVTSDVIVGFPGETEEEFLETYNFVKDHQFSELHVFPYSKRTGTPAARMEDQVDENVK 353

Query: 388 AE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GK---LVGRSPWLQSVVL 440
            E   RL+ L  +L ++  S   A  G ++E++ E+  KE+ GK    VG +     VV 
Sbjct: 354 NERVHRLIALSDQLAKEYAS---AYEGDVLEIIPEESFKEQEGKHNLYVGYTDNYMKVVF 410

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 IG ++KV+IT        G+ V
Sbjct: 411 EGTEDMIGRLVKVKITKAGYPYNEGQFV 438


>gi|168187871|ref|ZP_02622506.1| conserved hypothetical protein [Clostridium botulinum C str.
           Eklund]
 gi|169294276|gb|EDS76409.1| conserved hypothetical protein [Clostridium botulinum C str.
           Eklund]
          Length = 433

 Score =  227 bits (578), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 141/441 (31%), Positives = 245/441 (55%), Gaps = 17/441 (3%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N+Y+S  M + F   GYE V+  + AD+ V+NTC +   + +K    L R +  
Sbjct: 7   TLGCRVNMYESEAMAEKFIKNGYEVVDFDEMADVYVVNTCTVTNMSDKKSRQMLSRAK-- 64

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF-GKRV 149
                ++  + ++   GC  Q   E++ +    V+V++G +    +   + RA+   K +
Sbjct: 65  -----RKNPNSVIAAVGCYTQIAPEKV-KEIGDVDVILGTRNKGDIVYWVNRAKEEDKTI 118

Query: 150 VDTDYSVEDK-FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           V+ +  +++K FE L+I +  Y  K    AFL IQ+GC+ FC++C++P+ RG   S++  
Sbjct: 119 VEVNDVLKNKKFEELNIEE--YQDK--TRAFLKIQDGCNNFCSYCLIPFARGAVCSKNPK 174

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
            V+DE +KL  +G  E+ L G +++++ G  L+G+     ++L  + +I G+ R+R  + 
Sbjct: 175 IVIDEVKKLAAHGFKEVILSGIDISSY-GVDLEGD-WNLLNILKEIDKIDGITRVRIGSI 232

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
            P   ++  I+  G+L  L P+ HL +QSG +  LK MNR++T  E+  +I+ +R    D
Sbjct: 233 GPEFFNEDRIRQIGNLKKLCPHFHLSLQSGCNETLKRMNRKYTIEEFENVINLLRKYIKD 292

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           I+I++D IVGFPGETDD+F+ T + + +I  ++   FKYSPR GT    M +QV+ N+K 
Sbjct: 293 ISITTDIIVGFPGETDDEFKKTYEYLKRIKLSKMHIFKYSPRTGTRAEKMEKQVNGNIKE 352

Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNSKNHNI 447
           ER   L K     +  F D  +G+ +EVL E+    K G   G +P    V+  SK    
Sbjct: 353 ERSKALIKLNEINEKKFIDKFIGENMEVLYEQQCNNKEGYYEGYTPNYIKVISESKEDFS 412

Query: 448 GDIIKVRITDVKISTLYGELV 468
           G I+  ++ + K     G+++
Sbjct: 413 GKIVNTKLIETKEEYAIGKII 433


>gi|328713992|ref|XP_003245232.1| PREDICTED: CDK5 regulatory subunit-associated protein 1-like
           [Acyrthosiphon pisum]
          Length = 580

 Score =  227 bits (578), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 149/476 (31%), Positives = 250/476 (52%), Gaps = 39/476 (8%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ +++ YGCQMNV D+  +  +  ++GY + NS+ +AD+I+L TC IR+ A  K+++ +
Sbjct: 86  RKVYIEVYGCQMNVNDAEIVWSILQNEGYIKTNSIYEADVILLVTCAIRDSAENKIWTRI 145

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSP-IVNVVVGPQTYYRLPELLERA 143
            ++R++K  R K    L + + GC+A+   E+++  S   +++V GP +Y  LP LL + 
Sbjct: 146 KQLRSVKRWRGKLDP-LKIGILGCMAERLKEKLVSDSKGAIDLVAGPDSYRDLPRLLAKT 204

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             G++ ++   S ++ +  +  V    +    VTA+++I  GCD  CT+C+VP+TRG E 
Sbjct: 205 EAGQKAINVLLSFDETYAEIKPVKLNDD---NVTAYVSIMRGCDNMCTYCIVPFTRGRER 261

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG------------------KGLDGEK- 244
           SR +  ++DE + L + G  E+TLLGQNVN++R                   K +  EK 
Sbjct: 262 SRPVESILDEIKYLSEKGFKEVTLLGQNVNSYRDLSTSSFFMPSTNTLASGFKTVYKEKK 321

Query: 245 --CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
               F++LL  +S++   +R+R+T+ HP+D  D ++    +   +   LHLP Q GS  +
Sbjct: 322 GGVRFAELLNRVSDVDPEMRIRFTSPHPKDFPDEVLDIILEKPNVCKNLHLPAQCGSTEV 381

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           L+ M R +T   Y  +   IR   P +  SSDFI GF GETD++F  T+ L++ + Y  A
Sbjct: 382 LEKMRRGYTRESYLSLAQHIRDRLPGVTYSSDFIAGFCGETDEEFEDTISLMETVKYHNA 441

Query: 363 FSFKYSPRLGTPGSNML-EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKH 421
           F F YS R  T       + V   +K ER+  +    R      N   V     +L+E  
Sbjct: 442 FLFAYSMREKTTAYRRYKDDVPHEIKVERVKKMFNVFRRDAEILNKQFVNTEQLMLVEGE 501

Query: 422 GKE-KGKLVGRSPW-LQSVVLNSK--------NHNI--GDIIKVRITDVKISTLYG 465
            +     L GR+   ++ ++ N+K        N +I  GD I V+I +     L G
Sbjct: 502 SRRGPSDLCGRTDGNIKVIIPNTKLPLEESSFNQDIKPGDYITVKIIESNSQVLKG 557


>gi|302391395|ref|YP_003827215.1| MiaB-like tRNA modifying enzyme [Acetohalobium arabaticum DSM 5501]
 gi|302203472|gb|ADL12150.1| MiaB-like tRNA modifying enzyme [Acetohalobium arabaticum DSM 5501]
          Length = 436

 Score =  227 bits (578), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 147/447 (32%), Positives = 244/447 (54%), Gaps = 17/447 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +R    + GC++N YD+  M ++F +  YE V+  D+AD+ V+NTC +  + A K    +
Sbjct: 2   ERVAFYTLGCKVNQYDTEAMINLFTAADYELVDFSDEADVYVINTCTVTHQGARKSRKMV 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R  N +N +       +V V GC  Q    EIL     V+++VG +   R+ +L+E+A+
Sbjct: 62  RRA-NRRNPQA------IVAVVGCYPQVSPAEILEIDG-VDLIVGTEGQSRIVDLVEQAK 113

Query: 145 FGKRVVD--TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
                ++   D S  + FE + + D    R R   A L +Q+GCD FC +C++PYTRG  
Sbjct: 114 RADESLNFVRDISEAEDFEEIPL-DKFEERTR---ASLKVQDGCDNFCAYCIIPYTRGSV 169

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR +   V EA++L  +G  EI L G ++ A+ GK ++ E+     LL  L EI GL R
Sbjct: 170 RSRRIEDAVAEAKRLAASGFKEIVLTGIHLGAY-GKEVE-EEIDLVTLLKELIEISGLER 227

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R ++    +++  LI      + L  +LHLP+Q+GSD+IL +MNR +T  +Y   +  I
Sbjct: 228 IRLSSIEATEVTSDLIDLIATEEKLCRHLHLPLQNGSDKILAAMNRDYTVQQYADKVAEI 287

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           RS  P IA+++D +VGFPGETD+DF AT  L++++ ++    FKYS R GT  +    QV
Sbjct: 288 RSNIPQIALTTDVMVGFPGETDEDFEATYQLIEELAFSDLHVFKYSKREGTAAAKFSNQV 347

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GRSPWLQSVVLN 441
              +K ER   L+K   +    +    +G  ++VLIE+       L+ G +     V+++
Sbjct: 348 HSKLKKERSAKLRKLADDLASQYRKKFLGAELDVLIEEERDGSTDLLTGLTDNYLRVMID 407

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
            ++    ++I+V +  ++   L G++ 
Sbjct: 408 DQDQYRKELIEVELNKLQEDYLIGKIT 434


>gi|281416862|ref|ZP_06247882.1| RNA modification enzyme, MiaB family [Clostridium thermocellum
           JW20]
 gi|281408264|gb|EFB38522.1| RNA modification enzyme, MiaB family [Clostridium thermocellum
           JW20]
          Length = 434

 Score =  227 bits (578), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 146/443 (32%), Positives = 238/443 (53%), Gaps = 22/443 (4%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRI-RN 89
           + GC++N Y++  + +MF   GY+ V+  D+AD+ V+NTC +   +  K    + R  RN
Sbjct: 8   TLGCKVNQYETEAISEMFEKAGYKIVDFEDEADVYVINTCTVTNLSDRKSRQMIRRAKRN 67

Query: 90  LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF--GK 147
            +NS        +V+V GC AQ   EE+ +    VN+VVG +   R+ E L+      G+
Sbjct: 68  NENS--------IVIVIGCYAQTAPEEVSKIEG-VNLVVGTKDRSRILEYLKELETSGGR 118

Query: 148 RVVDTDYSVEDKFERLSIVDGGYN-RKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           R    D     +FE L     G N  K    AF+ IQEGC++FCT+C++PY RG   SRS
Sbjct: 119 RNYVGDIMKTREFEEL-----GVNVYKERTRAFIKIQEGCNQFCTYCIIPYARGPVRSRS 173

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
              ++ E   L  +G  E+ L G +V ++   G D +  +  D++  + EI+G+ R+R  
Sbjct: 174 EENILKEVSGLAHSGYKEVVLTGIHVASY---GKDIKNTSLIDIIRKVHEIEGIERIRLG 230

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
           +  P  +++  ++A   ++ L P  H+ +QSG D  LK MNR++T  EY + ++ +R   
Sbjct: 231 SIEPTTVTEEFVRAIKGMEKLCPQFHISLQSGCDSTLKRMNRKYTTKEYLKSVELLRENL 290

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
            D+A+++D +VGFPGETD++F  T   V+K+ +A+   FKYS R GTP ++  +QV    
Sbjct: 291 KDVAVTTDVMVGFPGETDEEFNETCRFVEKVLFARMHVFKYSRRKGTPAASYPDQVAPQK 350

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNSKNH 445
           K ER   L +      + +N +  G+++ VL E+  K K G + G +P    V       
Sbjct: 351 KEERSRILIELASRMTLEYNKSFTGRVLPVLFEQEVKGKEGFMEGLTPNYIRVECKGDKD 410

Query: 446 NIGDIIKVRITDVKISTLYGELV 468
             G I+ V + + K   + GE+V
Sbjct: 411 IEGQILNVLLREAKDDYIVGEIV 433


>gi|332799055|ref|YP_004460554.1| MiaB-like tRNA modifying enzyme [Tepidanaerobacter sp. Re1]
 gi|332696790|gb|AEE91247.1| MiaB-like tRNA modifying enzyme [Tepidanaerobacter sp. Re1]
          Length = 435

 Score =  227 bits (578), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 144/448 (32%), Positives = 252/448 (56%), Gaps = 26/448 (5%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           FF  + GC++N Y+S  + ++F ++GYE V+    AD+ V+NTC++  ++A K    + +
Sbjct: 6   FF--TLGCKVNQYESAAIAELFENKGYEIVDFDTKADVYVINTCNVTNESARKSRQIIRK 63

Query: 87  -IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            IRN  +++        V V GC  Q    E+L     V+V VG +  +R+ +L+E+A  
Sbjct: 64  AIRNNPSAK--------VAVVGCYVQMALHEVLNIKG-VSVAVGTKDRHRIVDLVEKAEQ 114

Query: 146 GKRVVDTDYSV--EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             + + T  ++  +  FE +++   G+ +K    AFL IQ+GC+ FC++C++PY RG   
Sbjct: 115 CSKPIVTVGNIMKQQTFEEIAL--KGHRQK--TRAFLKIQDGCNMFCSYCIIPYARGPVR 170

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SRS+  ++DEA+ L  +G  EI L G ++  + G+    E     D++  +++I+G+ R+
Sbjct: 171 SRSIDNIIDEAQSLAKDGFKEIVLTGIHLGLY-GRDFKDENIHLLDVISRIADIEGIERI 229

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R ++    +++D  +K+   +     + H+P+QSG D +L+ MNRR+T  E+R  ID IR
Sbjct: 230 RLSSIEAMELTDEFLKSLCGIKKFCHHFHVPLQSGCDTVLRRMNRRYTTDEFRDRIDYIR 289

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
            + PD +I++D IVGFPGET+++F+ T + + +I +++   F +SPR GT   +M  Q++
Sbjct: 290 QLMPDASITTDVIVGFPGETEEEFKQTENFIKEINFSRLHVFPFSPRKGTLADDMPNQIE 349

Query: 384 ENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440
           ++VK E   RL+ L +KL +    F    V  I +VL E   K+     G +     V +
Sbjct: 350 KSVKVERSHRLISLSEKLEK---DFCKRFVNSIQKVLFED-KKDDNFYEGLTENYIKVGV 405

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
            SK      II VR+       ++GE+ 
Sbjct: 406 KSKQDLHNKIIHVRLKKNFNDYVFGEVT 433


>gi|213023715|ref|ZP_03338162.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Salmonella enterica
           subsp. enterica serovar Typhi str. 404ty]
          Length = 245

 Score =  227 bits (578), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 120/241 (49%), Positives = 161/241 (66%), Gaps = 12/241 (4%)

Query: 68  NTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVV 127
           NTC IREKA EKV+  LGR R LK    ++  DL++ V GCVA  EGE I +R+  V+++
Sbjct: 1   NTCSIREKAQEKVFHQLGRWRLLK----EKNPDLIIGVGGCVASQEGEHIRQRAHYVDII 56

Query: 128 VGPQTYYRLPELLERARFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEG 185
            GPQT +RLPE++   R G R  VVD  +   +KF+RL        R  G TAF++I EG
Sbjct: 57  FGPQTLHRLPEMINSVR-GDRSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEG 110

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C+K+CT+CVVPYTRG E+SR    ++ E  +L   GV E+ LLGQNVNAWRG+  DG   
Sbjct: 111 CNKYCTYCVVPYTRGEEVSRPSDDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTTG 170

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
           TF+DLL  ++ I G+ R+R+TTSHP + +D +I+ + D   L+ +LHLPVQSGSDR+L  
Sbjct: 171 TFADLLRLVAAIDGIDRIRFTTSHPIEFTDDIIEVYRDTPELVSFLHLPVQSGSDRVLNL 230

Query: 306 M 306
           M
Sbjct: 231 M 231


>gi|125972674|ref|YP_001036584.1| RNA modification protein [Clostridium thermocellum ATCC 27405]
 gi|256004833|ref|ZP_05429807.1| RNA modification enzyme, MiaB family [Clostridium thermocellum DSM
           2360]
 gi|125712899|gb|ABN51391.1| RNA modification enzyme, MiaB family [Clostridium thermocellum ATCC
           27405]
 gi|255991143|gb|EEU01251.1| RNA modification enzyme, MiaB family [Clostridium thermocellum DSM
           2360]
 gi|316941090|gb|ADU75124.1| RNA modification enzyme, MiaB family [Clostridium thermocellum DSM
           1313]
          Length = 434

 Score =  226 bits (577), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 146/443 (32%), Positives = 238/443 (53%), Gaps = 22/443 (4%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRI-RN 89
           + GC++N Y++  + +MF   GY+ V+  D+AD+ V+NTC +   +  K    + R  RN
Sbjct: 8   TLGCKVNQYETEAISEMFEKAGYKIVDFEDEADVYVINTCTVTNLSDRKSRQMIRRAKRN 67

Query: 90  LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF--GK 147
            +NS        +V+V GC AQ   EE+ +    VN+VVG +   R+ E L+      G+
Sbjct: 68  NENS--------IVIVIGCYAQTAPEEVSKIEG-VNLVVGTKDRSRILEYLKELETSGGR 118

Query: 148 RVVDTDYSVEDKFERLSIVDGGYN-RKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           R    D     +FE L     G N  K    AF+ IQEGC++FCT+C++PY RG   SRS
Sbjct: 119 RNYVGDIMKTREFEEL-----GVNVYKERTRAFIKIQEGCNQFCTYCIIPYARGPVRSRS 173

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
              ++ E   L  +G  E+ L G +V ++   G D +  +  D++  + EI+G+ R+R  
Sbjct: 174 EENILKEVSGLAHSGYKEVVLTGIHVASY---GKDIKNTSLIDIIRKVHEIEGIERIRLG 230

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
           +  P  +++  ++A   ++ L P  H+ +QSG D  LK MNR++T  EY + ++ +R   
Sbjct: 231 SIEPTTVTEEFVRAIKGMEKLCPQFHISLQSGCDSTLKRMNRKYTTKEYLRSVELLRENL 290

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
            D+A+++D +VGFPGETD++F  T   V+K+ +A+   FKYS R GTP ++  +QV    
Sbjct: 291 KDVAVTTDVMVGFPGETDEEFNETCRFVEKVLFARMHVFKYSRRKGTPAASYPDQVAPQK 350

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNSKNH 445
           K ER   L +      + +N +  G+++ VL E+  K K G + G +P    V       
Sbjct: 351 KEERSRILIELASRMTLEYNKSFTGRVLPVLFEQEVKGKEGFMEGLTPNYIRVECKGDKD 410

Query: 446 NIGDIIKVRITDVKISTLYGELV 468
             G I+ V + + K   + GE+V
Sbjct: 411 IEGQILNVLLREAKDDYIVGEIV 433


>gi|323704197|ref|ZP_08115776.1| RNA modification enzyme, MiaB family [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323536263|gb|EGB26035.1| RNA modification enzyme, MiaB family [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 467

 Score =  226 bits (577), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 148/445 (33%), Positives = 241/445 (54%), Gaps = 21/445 (4%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           FF  S GC++N Y++  M ++F S GY+ V   + AD+ V+NTC +  +   K       
Sbjct: 25  FF--SLGCKVNQYETEAMAEIFKSLGYDVVGFDEYADVYVINTCTVTGRGDMKSRQ---E 79

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           IR  K    K   D +V V GC +Q    E+L   P VNVV+G +    + +L+E+A   
Sbjct: 80  IRKAK----KINPDSVVAVVGCYSQVASNEVLN-IPEVNVVLGTKNKGEIVKLVEKAANA 134

Query: 147 KRVVDTDYSVED-KFERLSI-VDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            +V   +   +D KFE L I    G+ R     A+L IQ+GC+++CT+C++PY RG   S
Sbjct: 135 NKVNAVEDIFKDRKFEELKISAQEGHTR-----AYLKIQDGCNQYCTYCIIPYARGPIRS 189

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R  + + DE ++L DNG  E+ L G +V ++   G D E     D++  + EI+G+ R+R
Sbjct: 190 RKPNDIFDEVKRLRDNGYKEVVLTGIHVASY---GKDLENVDLLDIIKMIHEIEGIERIR 246

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
            ++  P  +++  ++    L     + H+ +QSGSD +LK M R++T  EY++I++R+R 
Sbjct: 247 LSSIEPTFLTEDFVREVSLLPKFCRHYHISLQSGSDSVLKRMGRKYTTSEYKRIVERVRK 306

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
              D+AI++D +VGFPGET+ +F  T +    I +++   FKYS R GT  ++  +Q+  
Sbjct: 307 YIEDVAITTDVMVGFPGETEREFNETYEFAKDIEFSKMHVFKYSRRAGTKAADYPDQIKN 366

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GRSPWLQSVVLNSK 443
           +VK ER   L K   E ++ F    +G  + VL E+  KE    V G +     V + S 
Sbjct: 367 SVKEERSKILIKLSEECELKFYRKFLGSTLNVLFEQRTKELNDYVEGLTDNYIRVAVKSD 426

Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468
            +    I+ V++ D+K     G +V
Sbjct: 427 LNIKNKILPVKLIDLKKDFAIGNIV 451


>gi|251780327|ref|ZP_04823247.1| conserved hypothetical protein [Clostridium botulinum E1 str. 'BoNT
           E Beluga']
 gi|243084642|gb|EES50532.1| conserved hypothetical protein [Clostridium botulinum E1 str. 'BoNT
           E Beluga']
          Length = 434

 Score =  226 bits (577), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 141/430 (32%), Positives = 237/430 (55%), Gaps = 20/430 (4%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  M + F  +GY   +  D AD+ V+NTC +     +K    + + R  
Sbjct: 7   TLGCRVNQYETEAMTEKFIREGYSVTDFDDFADVYVINTCTVTNMGDKKSRQIISKAR-- 64

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV- 149
                +   + ++ V GC +Q   EE+ +    V+VV+G +    +   + +AR  K + 
Sbjct: 65  -----RTNSNAIIAVVGCYSQIAPEEVSKIEG-VDVVLGTRNKGDIVYFVNKARDEKAIQ 118

Query: 150 VDTDYSVEDK-FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           V  +  +++K FE L+I +  Y  K    AFL IQ+GC++FCTFC++PY RG   S+   
Sbjct: 119 VSVNEVLKNKEFEELNIEE--YQDK--TRAFLKIQDGCNRFCTFCLIPYARGATCSKKPE 174

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYTT 267
           +V++E +KL ++G  E+ L G +  ++   G+D G   T   LL  + +I G+ R+R  +
Sbjct: 175 KVIEEVKKLAEHGFKEVILSGIHTASY---GVDLGTDVTLISLLEDIEKIDGIDRVRIGS 231

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
             P   +D +I    ++  L P+ HL +QSGSD  LK MNRR+TA EY + +  +R    
Sbjct: 232 IEPAFFTDEVINKIKNMKKLCPHFHLSLQSGSDATLKRMNRRYTADEYAKTVQTLRDNIQ 291

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
           D++I++D IVGFPGET+D+F  T + + K+   +   FKYSPR GT  + M  Q+D  +K
Sbjct: 292 DVSITTDLIVGFPGETEDEFNETYEYLKKLKLTKVHLFKYSPRKGTKAAEMPNQIDGTIK 351

Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSP-WLQSVVLNSKNH 445
            +R   L +  +E +V F    VG+ ++VLIE+    K G   G +  ++++ + ++   
Sbjct: 352 DKRSKILSELNKENEVDFVKKLVGREMDVLIERECSNKPGIFEGYTKNYVKAEISDASKE 411

Query: 446 NIGDIIKVRI 455
            IG I+   I
Sbjct: 412 MIGKIMDCNI 421


>gi|152976740|ref|YP_001376257.1| RNA modification protein [Bacillus cereus subsp. cytotoxis NVH
           391-98]
 gi|152025492|gb|ABS23262.1| RNA modification enzyme, MiaB family [Bacillus cytotoxicus NVH
           391-98]
          Length = 450

 Score =  226 bits (577), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 142/444 (31%), Positives = 241/444 (54%), Gaps = 21/444 (4%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  +  +F   GYERV+    AD+ V+NTC +     +K    + R    
Sbjct: 8   TLGCKVNHYETEAIWQLFKQSGYERVDFEKTADVYVVNTCTVTNTGDKKSRQVIRRA--- 64

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               ++   D ++ V GC AQ    EI+   P V++VVG Q   ++ + +E+ R  ++ +
Sbjct: 65  ----VRHNPDAVICVTGCYAQTSPAEIMA-IPGVDIVVGTQDREKMLDYIEQYRQERQPI 119

Query: 151 DTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           +   ++     +E L   D  Y   R   A L IQEGC+ FCTFC++P+ RG+  SR   
Sbjct: 120 NAVRNIMKTRVYEEL---DVPYFTDR-TRASLKIQEGCNNFCTFCIIPWARGLMRSRDGK 175

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKGLVRLRYTT 267
           +V+ +A++L+D G  EI L G +     G G D +    + LL  + +E+KGL RLR ++
Sbjct: 176 EVIKQAQQLVDAGYKEIVLTGIHTG---GYGEDMKDYNLAGLLRDMEAEVKGLKRLRISS 232

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
                +SD +I+      V++ +LH+P+QSGS+ +LK M R++T   +++ ++R++   P
Sbjct: 233 IEASQISDEVIEVLDKSKVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLNRLKEALP 292

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
            +AI+SD IVGFPGET+++F  T + + +  +++   F YS R GTP + M +Q+ E VK
Sbjct: 293 GLAITSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQIPEEVK 352

Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIE---KHGKEKGKLVGRSPWLQSVVLNSKN 444
            ER+  L +   +    +     G+++E++ E   K G  +G  VG +     VV     
Sbjct: 353 NERVHRLIELSNQLAKEYASQFEGEVLEIIPEEPFKEGDREGLYVGYTDNYLKVVFEGSE 412

Query: 445 HNIGDIIKVRITDVKISTLYGELV 468
             IG ++KV+IT        G+ V
Sbjct: 413 ELIGKLVKVKITKAGYPYNEGQFV 436


>gi|139439629|ref|ZP_01773042.1| Hypothetical protein COLAER_02069 [Collinsella aerofaciens ATCC
           25986]
 gi|133774970|gb|EBA38790.1| Hypothetical protein COLAER_02069 [Collinsella aerofaciens ATCC
           25986]
          Length = 310

 Score =  226 bits (577), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 127/305 (41%), Positives = 184/305 (60%), Gaps = 9/305 (2%)

Query: 170 YNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLG 229
           ++R+    A++ I  GC+ FCT+C+VPY RG E SR   ++VDE   L+  GV EITLLG
Sbjct: 5   WHRETQYHAWVPIMTGCNNFCTYCIVPYVRGREKSRPFEEIVDEVTGLVRQGVREITLLG 64

Query: 230 QNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMP 289
           QNVN++ G+ L G K  F+DLL ++ +  G+ R+ +T+SHP+D+    I A  +   +MP
Sbjct: 65  QNVNSY-GRDLFG-KPRFADLLRAVGD-TGVERIFFTSSHPKDLLPETIDAMAETPAVMP 121

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
            LHL VQSGS RILK MNRR+T  +Y  ++DRIR+  PDIA+S+D IVGFPGET++DF  
Sbjct: 122 QLHLAVQSGSTRILKEMNRRYTREDYLGLVDRIRNRMPDIALSTDIIVGFPGETEEDFEQ 181

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDAC 409
           T+ L + + YAQA++F YS R GTP + + +     V  ER   L K +      +N   
Sbjct: 182 TLSLAETVRYAQAYTFIYSKRAGTPAAEIDDPTPHEVILERFNRLVKVIETTAHEYNQGE 241

Query: 410 VGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVLN-----SKNHNIGDIIKVRITDVKISTL 463
           +  ++  LIE   K+    L+G+SP  Q+V        S +  +G I+ V +   K   L
Sbjct: 242 LHTVVPALIEGTSKKNDAVLLGKSPKNQTVHAPIPEGYSIDQLVGKIVDVDVDVAKTWYL 301

Query: 464 YGELV 468
            G +V
Sbjct: 302 SGSVV 306


>gi|323702404|ref|ZP_08114069.1| RNA modification enzyme, MiaB family [Desulfotomaculum nigrificans
           DSM 574]
 gi|323532710|gb|EGB22584.1| RNA modification enzyme, MiaB family [Desulfotomaculum nigrificans
           DSM 574]
          Length = 441

 Score =  226 bits (575), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 152/449 (33%), Positives = 235/449 (52%), Gaps = 28/449 (6%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG--R 86
           + + GC++N Y+S  + D+F   GY+ V+    AD+ V+NTC +         + LG  +
Sbjct: 7   IYTLGCKVNQYESAAIGDLFRQAGYQLVDFEQPADVYVVNTCTV---------THLGDRK 57

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
            R +     K+    ++ V GC AQ    E+L   P V++VVG +   R+ +L+E     
Sbjct: 58  SRQIIRRAAKQNPAAVIAVTGCYAQTSPGEVLE-IPGVDLVVGTRDRARIVKLVEGHVKN 116

Query: 147 KRVVDT--DYSVEDKFERLSI-VDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           K  V+   D    + FE L +  + G  R     AFL IQEGC+ FC +C++PY RG   
Sbjct: 117 KGPVNAVEDIMQSECFEELPVPTEQGKAR-----AFLKIQEGCNSFCAYCIIPYARGPVR 171

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR    V+  A +L+  G  EI L G ++ A+ G+    +    + L+  L+ + GL RL
Sbjct: 172 SRLPENVLKAATELVQQGYQEIVLTGIHIGAY-GQDFTAQNIDLAWLVERLAAVPGLRRL 230

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R  +  P D++  LI+A  +   +  +LH+P+QSG D+IL  M RR+   EY ++I  I 
Sbjct: 231 RLGSVEPHDINTALIEAVANHPNICRHLHIPLQSGDDQILAKMRRRYDTREYNRLIAEIY 290

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              P +AI+SD IVGFPGET+ +F+ T+  V K  +A+   FKYSPR GTP +   +QV 
Sbjct: 291 RKVPGVAITSDVIVGFPGETEANFQNTLRTVAKAKFARIHVFKYSPRKGTPAAEFADQVP 350

Query: 384 ENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GRSPWLQSVV 439
              K E   RL+ L ++L  +   F    VG+ +EVL+E+   E   L  G +     V+
Sbjct: 351 PEEKEERSRRLIELGEQLAHE---FARIQVGKDLEVLVEQPSHEYTPLWEGHTDTYLKVI 407

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
             +     G I KV I +V+   L G ++
Sbjct: 408 FPADESVRGQIAKVHIDNVEGPILKGTII 436


>gi|148262793|ref|YP_001229499.1| MiaB-like tRNA modifying enzyme YliG [Geobacter uraniireducens Rf4]
 gi|238066246|sp|A5GBX9|RIMO_GEOUR RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|146396293|gb|ABQ24926.1| SSU ribosomal protein S12P methylthiotransferase [Geobacter
           uraniireducens Rf4]
          Length = 448

 Score =  226 bits (575), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 157/463 (33%), Positives = 246/463 (53%), Gaps = 37/463 (7%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCH-IREKAAEKVY 81
           + ++  + S GC  N+ D+  M      + YE      +AD+I++NTC  I+E   E + 
Sbjct: 5   IKEKVSLVSLGCPKNLVDAEVMLGYLAKEKYEVTTDEREADIIIVNTCSFIKEAKQESID 64

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL- 140
           + L       ++R +     L++V GC+ Q   EE+++  P V++ VG   Y R+ E++ 
Sbjct: 65  TILDLADRKHDARCR-----LLIVTGCLPQRYQEELVKELPEVDIFVGTGDYPRIAEIIA 119

Query: 141 ------ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCV 194
                 E+ R+     D ++  ++   RL             TA+L I EGC   C++CV
Sbjct: 120 EKEGMSEQLRY---TGDPNFLYDEDLPRL-------QSSPYYTAYLKIAEGCSNCCSYCV 169

Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL 254
           +P  RG   SR L +++ EAR+L+  GV EI L+ Q++  + GK L G   +   L+  L
Sbjct: 170 IPSLRGAFRSRPLDKLLKEARELVARGVKEINLIAQDITGY-GKDLAG-GASLEGLIKEL 227

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
           + + GL  +R   ++P  +SD LI+   D D +  YL +P+Q  SD +LK MNRR +  E
Sbjct: 228 AALDGLQWIRLLYAYPDGISDSLIQLIRDEDKVCKYLDIPLQHVSDPVLKRMNRRSSEAE 287

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
            R +I ++R   P IA+ +  IVGFPGETD+DF+  +  V++  + +   F YS   GTP
Sbjct: 288 IRSLIAKLRGEIPGIALRTSLIVGFPGETDEDFKKLLHFVEETRFDRLGVFCYSREEGTP 347

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQ-QVSF--NDACVGQIIEVLIEKHGKE-----KG 426
            + M +QV E VK ER    +K +R Q +VSF  N + V     VLIE + +E     KG
Sbjct: 348 SAEMPDQVSERVKRER---YKKLMRTQARVSFKHNRSLVDTEELVLIEGYSEETELLLKG 404

Query: 427 KLVGRSPWLQ-SVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           +   ++P +   V + S N  IGDI+K+RITD     L GE+V
Sbjct: 405 RSSKQAPDIDGQVYVTSGNAQIGDIVKLRITDSSDYDLIGEIV 447


>gi|166030899|ref|ZP_02233728.1| hypothetical protein DORFOR_00579 [Dorea formicigenerans ATCC
           27755]
 gi|166029166|gb|EDR47923.1| hypothetical protein DORFOR_00579 [Dorea formicigenerans ATCC
           27755]
          Length = 440

 Score =  226 bits (575), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 153/451 (33%), Positives = 239/451 (52%), Gaps = 30/451 (6%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ DS  M  +   +GY+ V+S +DAD+IV+NTC     A E+    +  +   
Sbjct: 7   SLGCDKNLVDSEVMLGLLDKKGYQIVDSEEDADIIVVNTCCFIHDAKEESIQTILEMAEY 66

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
           K    KEG    ++V GC+AQ   +EI+   P V+ V+G  +Y  + E +E A  G   V
Sbjct: 67  K----KEGKLKALIVTGCLAQRYQQEIIDEIPEVDAVLGTTSYDHIVEAVEEALAGNGHV 122

Query: 151 ---DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
              D D   + K +RL    G Y       A++ I EGCDK CT+C++P  RG   S  +
Sbjct: 123 VLEDVDALPDVKEKRLVTTGGHY-------AYMKIAEGCDKHCTYCIIPKLRGNYRSVPM 175

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
            +++ EA+ L D GV E+ L+ Q    + GK L GEK +   LL  L +I G+  +R   
Sbjct: 176 EKLLAEAKDLADQGVKELILVAQETTVY-GKDLYGEK-SLHKLLRELCKISGIQWIRILY 233

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
            +P ++ D LI+   + + +  YL LP+Q  SD +LK M RR +  +  +II+++R   P
Sbjct: 234 CYPEEIYDELIQTIKEENKVCHYLDLPIQHASDAVLKRMGRRTSKAQLVEIIEKLRKEIP 293

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
           DI++ +  I GFPGET +      D VD++ + +   F YSP   TP + M EQ+ E VK
Sbjct: 294 DISLRTTLITGFPGETQEQHEELKDFVDEMEFDRLGVFTYSPEEDTPAATMTEQIPEEVK 353

Query: 388 AERLLCLQKKLRE--QQVSFNDA--CVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVV 439
            +R    Q +L E  Q+++F+ A   VG+ + V+IE    ++   VGR+    P +  ++
Sbjct: 354 EDR----QAELMELQQEIAFDLAEDMVGREVLVMIEGKVADENAYVGRTYKDAPNVDGLI 409

Query: 440 LNSKNHNI--GDIIKVRITDVKISTLYGELV 468
             + +  +  GD  +VR+T      L GEL+
Sbjct: 410 FINTDEELMSGDFARVRVTGALEYDLIGELI 440


>gi|323464328|gb|ADX76481.1| conserved hypothetical protein [Staphylococcus pseudintermedius
           ED99]
          Length = 449

 Score =  225 bits (574), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 135/440 (30%), Positives = 236/440 (53%), Gaps = 17/440 (3%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  +  +F    Y RV+   +AD+ V+NTC +     +K    + R    
Sbjct: 8   TLGCKVNHYETEAIWQLFKDAEYNRVDFEQNADVFVINTCTVTNTGDKKSRQIIRRA--- 64

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               I++  D ++ V GC AQ    EI+   P V++VVG Q  ++L + ++  +  ++ +
Sbjct: 65  ----IRQNPDAVICVTGCYAQTSSAEIME-IPGVDIVVGTQDRHKLLDYIDTYQDERQPI 119

Query: 151 D--TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           +  ++      +E L   D  Y   R   A L IQEGC+ FCTFC++P+ RG+  SR   
Sbjct: 120 NGVSNIMKNRTYEEL---DVPYFTDR-TRASLKIQEGCNNFCTFCIIPWARGLMRSRDPK 175

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
           +V+++A +L+++G  EI L G +     G G D +    + LL  L  + GL R+R ++ 
Sbjct: 176 KVIEQATQLVNSGYKEIVLTGIHTG---GYGQDLKDYNLAQLLRDLETVDGLERIRISSI 232

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
               ++D +I+       ++ +LH+P+QSGSD +LK M R+++   + + I ++ +  P 
Sbjct: 233 EASQLTDEVIEVLQQSQKVVRHLHIPLQSGSDSVLKRMRRKYSMAHFSERIQKLHAALPG 292

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           +A++SD IVGFPGET+ +F+ T D +    +++   F YSPR+GTP + M +Q+DE +K 
Sbjct: 293 LAVTSDVIVGFPGETEAEFQETYDFIVNHHFSELHVFPYSPRIGTPAARMDDQIDEEIKN 352

Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIG 448
           ER+  L +   +   ++       ++EV+ E+ G + G LVG +     V        IG
Sbjct: 353 ERVHKLIELSNQLAKTYASKFENDVLEVIPEEKGSQDGLLVGYADNYMKVEFVGDESLIG 412

Query: 449 DIIKVRITDVKISTLYGELV 468
            I KV++T        G L+
Sbjct: 413 QICKVKVTQAGYPINQGTLL 432


>gi|319892634|ref|YP_004149509.1| MiaB family protein, possibly involved in tRNA or rRNA modification
           [Staphylococcus pseudintermedius HKU10-03]
 gi|317162330|gb|ADV05873.1| MiaB family protein, possibly involved in tRNA or rRNA modification
           [Staphylococcus pseudintermedius HKU10-03]
          Length = 449

 Score =  225 bits (574), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 135/440 (30%), Positives = 236/440 (53%), Gaps = 17/440 (3%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  +  +F    Y RV+   +AD+ V+NTC +     +K    + R    
Sbjct: 8   TLGCKVNHYETEAIWQLFKDAEYNRVDFEQNADVFVINTCTVTNTGDKKSRQIIRRA--- 64

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               I++  D ++ V GC AQ    EI+   P V++VVG Q  ++L + ++  +  ++ +
Sbjct: 65  ----IRQNPDAVICVTGCYAQTSSAEIME-IPGVDIVVGTQDRHKLLDYIDTYQDERQPI 119

Query: 151 D--TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           +  ++      +E L   D  Y   R   A L IQEGC+ FCTFC++P+ RG+  SR   
Sbjct: 120 NGVSNIMKNRTYEEL---DVPYFTDR-TRASLKIQEGCNNFCTFCIIPWARGLMRSRDPK 175

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
           +V+++A +L+++G  EI L G +     G G D +    + LL  L  + GL R+R ++ 
Sbjct: 176 KVIEQATQLVNSGYKEIVLTGIHTG---GYGQDLKDYNLAQLLRDLETVDGLERIRISSI 232

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
               ++D +I+       ++ +LH+P+QSGSD +LK M R+++   + + I ++ +  P 
Sbjct: 233 EASQLTDEVIEVLQQSQKVVRHLHIPLQSGSDSVLKRMRRKYSMAHFSERIQKLHAALPG 292

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           +A++SD IVGFPGET+ +F+ T D +    +++   F YSPR+GTP + M +Q+DE +K 
Sbjct: 293 LAVTSDVIVGFPGETEAEFQETYDFIVNHHFSELHVFPYSPRIGTPAARMDDQIDEEIKN 352

Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIG 448
           ER+  L +   +   ++       ++EV+ E+ G + G LVG +     V        IG
Sbjct: 353 ERVHKLIELSNQLAKTYASKFENDVLEVIPEEKGSQDGLLVGYADNYMKVEFVGDESLIG 412

Query: 449 DIIKVRITDVKISTLYGELV 468
            I KV++T        G L+
Sbjct: 413 QICKVKVTQAGYPINQGTLL 432


>gi|331085298|ref|ZP_08334384.1| ribosomal protein S12 methylthiotransferase rimO [Lachnospiraceae
           bacterium 9_1_43BFAA]
 gi|330408081|gb|EGG87571.1| ribosomal protein S12 methylthiotransferase rimO [Lachnospiraceae
           bacterium 9_1_43BFAA]
          Length = 440

 Score =  225 bits (574), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 152/455 (33%), Positives = 241/455 (52%), Gaps = 31/455 (6%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
            FV S GC  N+ D+  M  M  S+GY+ V    +AD+IV+NTC     A E+    +  
Sbjct: 4   LFV-SLGCDKNLVDTEVMLGMLASRGYQMVEDESEADIIVINTCCFIHDAKEESIQTILE 62

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           +  LK    KEG    ++V GC+AQ   +EI+   P V+ V+G  +Y ++ + ++ A  G
Sbjct: 63  MSELK----KEGRLKALIVTGCLAQRYQQEIIDEIPEVDAVLGTTSYDKILDAVDEALEG 118

Query: 147 K---RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
               ++ D D       +RL    G +       A+L I EGCDK CT+C++P  RG   
Sbjct: 119 HHYLKMTDIDALPTVDSKRLVTTGGHF-------AYLKIAEGCDKHCTYCIIPKIRGNFR 171

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           S  + Q+V EA +L + GV E+ L+ Q    + GK L GEK +   LL  L +I G+  +
Sbjct: 172 SVPMEQLVREAEELAEQGVKELILVAQETTLY-GKDLYGEK-SLHKLLKELCKIAGIRWI 229

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R    +P +++D LI+   +   +  YL LP+Q  SD ILK M RR +  +  +II+++R
Sbjct: 230 RVLYCYPEEITDELIQVMKEESKICHYLDLPIQHASDGILKRMGRRTSKAQLIEIIEKLR 289

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              PDI + +  I GFPGET++     MD VD++ + +   F YSP   TP + M +Q++
Sbjct: 290 REIPDITLRTTLITGFPGETEEQHEELMDFVDQMEFDRLGVFTYSPEEDTPAATMPDQIE 349

Query: 384 ENVKAERLLCLQKKLRE--QQVSFNDA--CVGQIIEVLIEKHGKEKGKLVGRS----PWL 435
           ENVK +R    Q +L E  Q ++F  A   +G+ + V+IE    ++   VGR+    P +
Sbjct: 350 ENVKEDR----QAELMELQQDIAFEQAEDMIGREVLVMIEGKIADENAYVGRTYKDAPNV 405

Query: 436 QSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468
             ++  + +  +  GD  +V++T      L GE+V
Sbjct: 406 DGLIFVNTDEELMSGDFARVKVTGALEYDLIGEIV 440


>gi|331270008|ref|YP_004396500.1| MiaB-like tRNA modifying protein [Clostridium botulinum BKT015925]
 gi|329126558|gb|AEB76503.1| MiaB-like tRNA modifying enzyme [Clostridium botulinum BKT015925]
          Length = 433

 Score =  225 bits (573), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 143/444 (32%), Positives = 246/444 (55%), Gaps = 23/444 (5%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++NVY+S  M + F   GYE V   + AD+ V+NTC +   + +K    + R +  
Sbjct: 7   TLGCRVNVYESEAMAEKFIKGGYEVVQFDEVADVYVVNTCTVTNMSDKKSRQMISRAK-- 64

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF-GKRV 149
                ++  + ++   GC  Q   E++ R    V+V++G +    +   + RA+  GK +
Sbjct: 65  -----RKNPESVIAAVGCYTQIAPEKV-REIGDVDVILGTRNKGDIVYWVNRAKEEGKTI 118

Query: 150 VDTDYSVEDK-FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           V+ +  +++K FE L+I +  Y  K    AFL IQ+GC+ FC++C++P+ RG   S++  
Sbjct: 119 VEVNDVLKNKQFEELNIEE--YQDK--TRAFLKIQDGCNNFCSYCLIPFARGAVCSKNPE 174

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
            ++DE +KL ++G  E+ L G +++++ G  L+G       +L ++ EI+G+ R+R  + 
Sbjct: 175 TIIDEVKKLSEHGFKEVILSGIDISSY-GVDLEG-NWNLLKVLKAIDEIEGINRVRIGSI 232

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
            P    + +IK  G L  L P+ HL +QSG +  LK MNR++T  E+R II  +R    D
Sbjct: 233 GPEFFDEDIIKEIGSLKKLCPHFHLSLQSGCNSTLKRMNRKYTTEEFRDIIVLLRKYVKD 292

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           I+I++D IVGFPGET ++F  T + + +I  ++   FKYSPR GT    M  QVD N+K 
Sbjct: 293 ISITTDIIVGFPGETKEEFEETYNYLKEIKLSKMHIFKYSPRTGTRAEKMENQVDGNIKE 352

Query: 389 ER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GRSPWLQSVVLNSKN 444
           ER   LL L +K    +  F +  +G+ +++L E+   +K +   G +P    V+  S+ 
Sbjct: 353 ERSKLLLALNEK---NEKEFMNKFIGEDMKILYEQKCSDKEEYYEGYTPNYIKVIAKSRE 409

Query: 445 HNIGDIIKVRITDVKISTLYGELV 468
              G I+  ++ + K     GE++
Sbjct: 410 DISGKILNTKLIETKEEYTIGEII 433


>gi|312898000|ref|ZP_07757409.1| MiaB-like tRNA modifying enzyme [Megasphaera micronuciformis F0359]
 gi|310620925|gb|EFQ04476.1| MiaB-like tRNA modifying enzyme [Megasphaera micronuciformis F0359]
          Length = 438

 Score =  225 bits (573), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 139/398 (34%), Positives = 217/398 (54%), Gaps = 25/398 (6%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC---HIREKAAEKVYSFLGRI 87
           + GC++N YD+  M  +F + GYE  +    AD+ V+NTC   H+ EK + ++      I
Sbjct: 8   TLGCRVNQYDTDSMRGLFAAAGYEEADFSGPADVYVINTCSVTHVGEKKSRQI------I 61

Query: 88  RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGP---QTYYRLPELLERAR 144
           R  K    +   D LV+V GC AQ    ++L   P V+ V+G    +   ++ E L   R
Sbjct: 62  RRAK----RNNADGLVIVTGCYAQL-SPDVLSAIPGVDAVIGTNERKCIVQVVESLRNER 116

Query: 145 FGKRVVDT-DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            G+ V    D    D+FE + +        R   A L IQEGC+ FC +C++PYTRG   
Sbjct: 117 SGRTVRAVHDIMGRDEFEEIPLYPSAVEHTR---ADLKIQEGCNNFCAYCIIPYTRGSLK 173

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVR 262
           SR    V++EA++L   G  EI L G ++ A+   G+D  ++ T + +L  L     + R
Sbjct: 174 SRQPDAVIEEAKRLSAAGFKEIVLTGIHLGAY---GMDLPDRPTLALVLKRLLAETDIAR 230

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R  +    ++ D L++A      + P+LHLP+QSGSD ILKSM R +T  EY  +I+ +
Sbjct: 231 IRMGSIESVEIGDDLVEAINSSSRICPHLHLPMQSGSDEILKSMKRHYTKEEYILLIEDL 290

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
                D+ +S+D I+GFPGETD+ F  TMD + ++ ++   +F YSPR GTP + M  QV
Sbjct: 291 HKKIKDLTVSTDLILGFPGETDELFDETMDTLKRLKFSHIHAFPYSPREGTPAAQMENQV 350

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
             +VK +R+  +    +EQ+    D  +G+ + VLIE+
Sbjct: 351 SSDVKKKRVETVNALSKEQKEEILDGMIGKTVHVLIEE 388


>gi|326201371|ref|ZP_08191243.1| RNA modification enzyme, MiaB family [Clostridium papyrosolvens DSM
           2782]
 gi|325988939|gb|EGD49763.1| RNA modification enzyme, MiaB family [Clostridium papyrosolvens DSM
           2782]
          Length = 436

 Score =  225 bits (573), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 147/445 (33%), Positives = 243/445 (54%), Gaps = 33/445 (7%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y+S  +  +F   GYE V+    +++ ++NTC +   +  K       IR  
Sbjct: 8   TLGCKVNQYESEAVSSIFEQNGYEIVSFEQVSNVYIINTCTVTNLSDRKSRQ---AIRKA 64

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK-RV 149
           K    K   D +V+V GC AQ   EE+L+  P VN+V+G +   R+ E +ER   G+ R+
Sbjct: 65  K----KTNPDSIVIVMGCYAQTSSEEVLK-IPGVNMVIGTKDRGRILEYVERIEAGECRI 119

Query: 150 VDTDYSVEDK-FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
              D  +  + FE L +       K    A+L IQEGC +FC +C++PY RG   SR   
Sbjct: 120 NAVDNIMASRSFEELKLS----TFKERTRAYLKIQEGCSQFCAYCIIPYARGPIRSRKPD 175

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
            +++E R+L D+G  E+ L G ++ ++   G + E  +  D++  +  I G+ R+R  + 
Sbjct: 176 DIIEEVRQLADSGFLEVVLTGIHLASY---GRELEDTSLLDIIRKIHSIDGIKRIRLGSI 232

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
            P  ++   ++A   L  L P+ HL +QSG D+ L  MNR++   EYR+ ++ +++  PD
Sbjct: 233 EPTTITKEFVEAAVGLPKLCPHFHLSLQSGCDKTLVEMNRKYNTDEYRRSVELLKNNIPD 292

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           +AI++D +VGFPGET +DF  + D  ++IG+++   FKYSPR GTP + M  QV    K 
Sbjct: 293 VAITTDLMVGFPGETGEDFAESRDFAEEIGFSKIHVFKYSPRKGTPAAGMKNQVSPEEKE 352

Query: 389 ER---LLCLQKKLREQQVSFNDACVGQIIEVLIEK--HGKEKGKLVGRSPWLQSVVLNSK 443
            R   +L L  +L ++   + +  VG+ +EVL E+  HG E G + G +     V+    
Sbjct: 353 RRSEIMLALSDELEKK---YLEKYVGRDMEVLYEQEMHG-EDGYIEGLTNNYIRVMAK-- 406

Query: 444 NHNIGDI-IKVRITDVKISTLYGEL 467
               GDI +K ++ + K+S + G L
Sbjct: 407 ----GDISLKGKLAETKLSKVNGVL 427


>gi|229051301|ref|ZP_04194819.1| hypothetical protein bcere0027_52370 [Bacillus cereus AH676]
 gi|229111783|ref|ZP_04241330.1| hypothetical protein bcere0018_40280 [Bacillus cereus Rock1-15]
 gi|229148157|ref|ZP_04276463.1| hypothetical protein bcere0012_52520 [Bacillus cereus BDRD-ST24]
 gi|228635297|gb|EEK91821.1| hypothetical protein bcere0012_52520 [Bacillus cereus BDRD-ST24]
 gi|228671657|gb|EEL26954.1| hypothetical protein bcere0018_40280 [Bacillus cereus Rock1-15]
 gi|228722059|gb|EEL73486.1| hypothetical protein bcere0027_52370 [Bacillus cereus AH676]
          Length = 450

 Score =  224 bits (572), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 140/432 (32%), Positives = 238/432 (55%), Gaps = 21/432 (4%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  +  +F   GYER      AD+ V+NTC +     +K    + R    
Sbjct: 8   TLGCKVNHYETEAIWQLFKQGGYERTEYEKKADVYVINTCTVTNTGDKKSRQVIRRA--- 64

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               +++  D ++ V GC AQ    EI+   P V++VVG Q   ++   +E  R  ++ +
Sbjct: 65  ----VRQNPDAVICVTGCYAQTSPAEIMA-IPGVDIVVGTQDREKMLGYIEEFRKERQPI 119

Query: 151 DTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           +   ++     +E L   D  Y   R   A L IQEGC+ FCTFC++P+ RG+  SR   
Sbjct: 120 NAVRNIMKTRVYEEL---DVPYFTDR-TRASLKIQEGCNNFCTFCIIPWARGLMRSRDGK 175

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKGLVRLRYTT 267
           +V+ +A++L+D G  EI L G +     G G D +    + LL  + +E+ GL RLR ++
Sbjct: 176 EVIKQAQQLVDAGYKEIVLTGIHTG---GYGEDIKDYNLAGLLRDMEAEVGGLKRLRISS 232

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
                +SD +I+     +V++ +LH+P+QSGS+ +LK M R++T   +++ +DR++ V P
Sbjct: 233 IEASQISDEVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEVLP 292

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
            +AI+SD IVGFPGET+++F  T + + +  +++   F YS R GTP + M +QV E+VK
Sbjct: 293 GLAITSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVK 352

Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIE---KHGKEKGKLVGRSPWLQSVVLNSKN 444
            +R+  L +   +    +  A  G+++E++ E   K G  +G  VG +     +V     
Sbjct: 353 NDRVHRLIELSNQLAKEYASAFEGEVLEIIPEEQFKEGDREGLYVGYTDNYLKIVFEGSE 412

Query: 445 HNIGDIIKVRIT 456
             IG ++KV+IT
Sbjct: 413 ELIGKLVKVKIT 424


>gi|169829242|ref|YP_001699400.1| hypothetical protein Bsph_3790 [Lysinibacillus sphaericus C3-41]
 gi|168993730|gb|ACA41270.1| UPF0004 protein [Lysinibacillus sphaericus C3-41]
          Length = 432

 Score =  224 bits (572), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 140/440 (31%), Positives = 236/440 (53%), Gaps = 22/440 (5%)

Query: 36  MNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRI 95
           MN Y++  +  +F  +GY+R      AD+ V+NTC +     +K    + R        I
Sbjct: 1   MNHYETEAIWQLFKDEGYDRTEFDQQADVYVINTCTVTNTGDKKSRQVIRRA-------I 53

Query: 96  KEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYS 155
           ++  D ++ V GC AQ    EI+   P V++VVG Q   +L   +++ R  ++ ++   +
Sbjct: 54  RQNPDAVICVTGCYAQTSPAEIMA-IPGVDIVVGTQDRTKLLGYIDQYRAERQPINAVRN 112

Query: 156 VEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           +     +E L  V    +R R   A L IQEGC+ FCTFC++P+ RG+  SR   +V+ +
Sbjct: 113 IMKNRVYEELD-VPAFTDRTR---ASLKIQEGCNNFCTFCIIPWARGLMRSRDPQEVLHQ 168

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKGLVRLRYTTSHPRD 272
           A++L+D G  EI L G +     G G D +    + LL  L + + GL RLR ++     
Sbjct: 169 AQQLVDAGYLEIVLTGIHTG---GYGQDLKDYNLAQLLRDLEANVTGLKRLRISSIEASQ 225

Query: 273 MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAIS 332
           ++D +I    +  +++ +LH+P+QSGSD +LK M R++T   + + + ++    PD+A++
Sbjct: 226 LTDEVIDVLRESKIVVNHLHIPIQSGSDTVLKRMRRKYTMEFFGERLTKLHEALPDLAVT 285

Query: 333 SDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAE--- 389
           SD IVGFPGET+++F  T + +    +++   F +SPR GTP + M +Q+DE++K E   
Sbjct: 286 SDVIVGFPGETEEEFMDTYNFIRDHKFSELHVFPFSPRTGTPAARMEDQIDEDIKNERVH 345

Query: 390 RLLCLQKKLREQQVS-FNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIG 448
           RL+ L  +L ++  S F D  +  I E  +    +E+G L G +     VV       IG
Sbjct: 346 RLISLNDQLAKEYASRFEDQVLEVIPEEFVHDGSEEEGLLTGYTDNYLKVVFEGPESLIG 405

Query: 449 DIIKVRITDVKISTLYGELV 468
            ++KV+IT        G+ V
Sbjct: 406 QLVKVKITQAGYPHSQGQFV 425


>gi|319651610|ref|ZP_08005737.1| hypothetical protein HMPREF1013_02349 [Bacillus sp. 2_A_57_CT2]
 gi|317396677|gb|EFV77388.1| hypothetical protein HMPREF1013_02349 [Bacillus sp. 2_A_57_CT2]
          Length = 450

 Score =  224 bits (572), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 142/447 (31%), Positives = 246/447 (55%), Gaps = 27/447 (6%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  +  +F   GYER +    +D+ V+NTC +     +K    + R    
Sbjct: 8   TLGCKVNHYETEAIWQLFKEAGYERTDFESVSDVYVINTCTVTNTGDKKSRQVIRRA--- 64

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               I++  D ++ V GC AQ    EI+   P V++VVG Q   ++ E +E+ +  ++ +
Sbjct: 65  ----IRKNPDAVICVTGCYAQTSPAEIMA-IPGVDIVVGTQDRVKMLEYIEQYKQERQPI 119

Query: 151 DTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           +   ++     +E L  V    +R R   A L IQEGC+ FCTFC++P+ RG+  SR   
Sbjct: 120 NGVGNIMKNRVYEELD-VPAFTDRTR---ASLKIQEGCNNFCTFCIIPWARGLMRSRDPK 175

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKGLVRLRYTT 267
           +V+ +A++L+D G  EI L G +     G G D +    + LL  L +++KGL RLR ++
Sbjct: 176 EVIRQAQQLVDAGYKEIVLTGIHTG---GYGEDMKDYNLAMLLRDLEAQVKGLKRLRISS 232

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
                ++D +I+      V++ +LH+P+QSGS+ +LK M R++T   + + ++R++   P
Sbjct: 233 IEASQITDEVIEVMDQSKVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFAERLERLKEALP 292

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
            +A++SD IVGFPGET+++F  T + + +  +++   F YS R GTP + M +Q+DE +K
Sbjct: 293 GLAVTSDVIVGFPGETEEEFMETYNFIKEHKFSELHVFPYSKRTGTPAARMDDQIDEEIK 352

Query: 388 AE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK---LVGRSPWLQSVVLN 441
            E   RL+ L  +L ++  S  +   G+++EV+ E+  KE       VG +     VV  
Sbjct: 353 NERVHRLIALSDQLAKEYASQYE---GEVLEVIPEESFKESSDSSLFVGYTDNYLKVVFP 409

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
           +    +G I+KV+IT        G+ V
Sbjct: 410 AAEEMVGQIVKVKITKAGYPYNEGQFV 436


>gi|227824689|ref|ZP_03989521.1| RNA modification enzyme [Acidaminococcus sp. D21]
 gi|226905188|gb|EEH91106.1| RNA modification enzyme [Acidaminococcus sp. D21]
          Length = 435

 Score =  224 bits (572), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 147/432 (34%), Positives = 229/432 (53%), Gaps = 23/432 (5%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N  D+  ME +F   GYE V   + +D+ ++NTC +            G+ R +
Sbjct: 9   TLGCKVNQSDTASMEKLFREAGYEIVPFGEASDICLINTCVVTNMGQ-------GKSRRM 61

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR-- 148
               IK     L+VV GC  Q   EE+      V+++VG +   R+ EL+E  R G+R  
Sbjct: 62  IRRTIKRDPKPLIVVTGCYPQTAPEEVAALEG-VDLLVGNRDRARIVELVEE-RLGERDA 119

Query: 149 --VVDT-DYSVEDKFERLSI-VDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
             V D  D  V  +FE L+  VD   +R     AFL IQEGCD++C++C++PY RG   S
Sbjct: 120 APVNDVLDLPVGSEFEDLAASVDDSRDR-----AFLKIQEGCDQYCSYCIIPYARGHLRS 174

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R LS +  E   L + G  E+ LLG ++  +  +  +GE+   SD + +   +  L RLR
Sbjct: 175 RPLSSIRREVEHLTEEGYKEVVLLGIHLGCYGKETANGER--LSDAVSAALSVPALCRLR 232

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
             +    ++   L++   +      +LHLP+QSG D+ILK+MNR +    ++++IDRIR+
Sbjct: 233 LGSLESVEVQPELLRLMQEDPRFCCHLHLPLQSGCDKILKAMNRPYDTARFKELIDRIRA 292

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             PD+AI++D IVGFPGET+ DF  T+   +  G+A+   F YS R GTP +   +Q+  
Sbjct: 293 AVPDVAITTDIIVGFPGETEADFAQTLTFAEACGFAKIHIFPYSKRKGTPAAERKDQLSN 352

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
             K +R+  L+   R+    F    +G+   VL E+ G+ KG   G +P    V L S+ 
Sbjct: 353 KEKEDRVHRLEAVDRKGNEIFRKTLIGRQYPVLWEQIGR-KGLWEGLTPNYVRVYLKSEE 411

Query: 445 HNIGDIIKVRIT 456
              G +  V +T
Sbjct: 412 DLTGTLTTVAVT 423


>gi|220929654|ref|YP_002506563.1| RNA modification enzyme, MiaB family [Clostridium cellulolyticum
           H10]
 gi|219999982|gb|ACL76583.1| RNA modification enzyme, MiaB family [Clostridium cellulolyticum
           H10]
          Length = 454

 Score =  224 bits (571), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 134/442 (30%), Positives = 238/442 (53%), Gaps = 20/442 (4%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y+S  +  +F   GYE V+   D+D+ ++NTC +   +  K    + + +  
Sbjct: 29  TLGCKVNQYESEAVSSIFEKNGYEVVSFEQDSDVYIINTCTVTNLSDRKSRQAIRKAK-- 86

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
                K   + +V+V GC AQ   EE+L+  P V++V+G +   R+ E +ER   G+  +
Sbjct: 87  -----KTNPNSIVIVMGCYAQTSSEEVLK-IPGVDMVIGTKDRSRIIEYVERIESGECRI 140

Query: 151 DT--DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           +   +  V   FE L +       K    A+L IQEGC +FC++C++PY RG   SR   
Sbjct: 141 NAVDNIMVSGTFEELKLS----TYKERTRAYLKIQEGCSQFCSYCIIPYARGPIRSRKPD 196

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
            +++E + L ++G  EI L G ++ ++   G + +     D++     I G+ R+R  + 
Sbjct: 197 DIIEEVKHLAESGFLEIVLTGIHLASF---GREIKDTNLLDIIKKTHSIDGIKRIRLGSL 253

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
            P  +++  + A G L  L P+ HL +QSG D+ L  MNR++   EYR+ ++ +++  PD
Sbjct: 254 EPTTITEEFVDAVGRLPKLCPHFHLSLQSGCDKTLAEMNRKYRTDEYRKSVELLKNNIPD 313

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           +AI++D +VGFPGET++DF  + D  ++IG+++   FKYSPR GTP + M  Q+    K 
Sbjct: 314 VAITTDLMVGFPGETEEDFLMSRDFAEEIGFSKIHVFKYSPRKGTPAAVMKNQIGPEEKE 373

Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEK--HGKEKGKLVGRSPWLQSVVLNSKNHN 446
            R   +     E +  + +  VG+ +EVL E+   GKE G + G +     V+    ++ 
Sbjct: 374 RRSEIMLDLSDELEKKYMEGFVGRNMEVLYEQEMQGKE-GYIEGLTKNYIRVMAKGDSNL 432

Query: 447 IGDIIKVRITDVKISTLYGELV 468
            G +++ ++  V  +   G ++
Sbjct: 433 KGKLMETKLYKVNGTLFEGNII 454


>gi|332295064|ref|YP_004436987.1| RNA modification enzyme, MiaB family [Thermodesulfobium narugense
           DSM 14796]
 gi|332178167|gb|AEE13856.1| RNA modification enzyme, MiaB family [Thermodesulfobium narugense
           DSM 14796]
          Length = 448

 Score =  224 bits (571), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 147/448 (32%), Positives = 238/448 (53%), Gaps = 15/448 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           +P+ FFV+  GCQMN Y+      +F   G    N  +DA++IVL +C +RE A  K  +
Sbjct: 14  LPKTFFVEVLGCQMNKYEGEVFTSLFLKHGLLPSNP-EDAEVIVLLSCAVRENAENKALA 72

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +G+    K    KE       + GC A+  GE+IL R P ++V+  P +   +  +++ 
Sbjct: 73  RIGKYLKYK----KERKLKCFALGGCQAKIWGEKILERFPKIDVLFSPASLEDVETIVKH 128

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
                  ++   S+ +  + + + +  Y+     +A+L I  GC++FCT+C VPY RG E
Sbjct: 129 IIERSNYINLKESITNP-DCIPVPENQYDFP---SAYLPISCGCNQFCTYCAVPYGRGRE 184

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SRSL  +++E  +    G  EI  LGQN +++ GK +     +  +LL   ++    + 
Sbjct: 185 KSRSLESILNEVSQRSKQGFKEIIYLGQNCDSY-GKDIGS---SLKELLELSAKKFPNLW 240

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
            +  TS+P  ++  L++     D L  Y  +P+QSGSDRILK MNR+++  +YR  I+ I
Sbjct: 241 FKCITSYPSMITKELLETIASYDNLCNYFSIPMQSGSDRILKLMNRKYSVEQYRNSINMI 300

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R + PD  I+SDFIVGFPGET+ DF+ T++ +++  Y       YS R  TP S   + +
Sbjct: 301 REIIPDAVITSDFIVGFPGETEKDFQDTINAIEEFKYDTVNIAIYSKRPFTPASKFEDNI 360

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSPWLQSVVLN 441
               KA+R   L KK  E  ++F    + ++++VLI  +  K+KG +  R+   Q V+  
Sbjct: 361 SYQEKAQRANILIKKAEEISLNFRKQYLNEVLDVLIRGEDKKKKGFISSRTKGHQIVIFK 420

Query: 442 SKNH-NIGDIIKVRITDVKISTLYGELV 468
            +N  + G   KV IT V    + GE V
Sbjct: 421 KRNKLDQGLKTKVYITSVLSHYMMGEEV 448


>gi|325660993|ref|ZP_08149620.1| ribosomal protein S12 methylthiotransferase rimO [Lachnospiraceae
           bacterium 4_1_37FAA]
 gi|325472500|gb|EGC75711.1| ribosomal protein S12 methylthiotransferase rimO [Lachnospiraceae
           bacterium 4_1_37FAA]
          Length = 440

 Score =  224 bits (571), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 151/455 (33%), Positives = 242/455 (53%), Gaps = 31/455 (6%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
            FV S GC  N+ D+  M  M  S+GY+ V    +AD+IV+NTC     A E+    +  
Sbjct: 4   LFV-SLGCDKNLVDTEVMLGMLASRGYQMVEDESEADIIVINTCCFIHDAKEESIQTILE 62

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           +  LK    KEG    ++V GC+AQ   +EI+   P V+ V+G  +Y ++ + ++ A  G
Sbjct: 63  MSELK----KEGRLKALIVTGCLAQRYQQEIIDEIPEVDAVLGTTSYDKILDAVDEALEG 118

Query: 147 K---RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
               ++ D D       +RL    G +       A+L I EGCDK CT+C++P  RG   
Sbjct: 119 HHYLKMTDIDALPTVDSKRLVTTGGHF-------AYLKIAEGCDKHCTYCIIPKIRGNFR 171

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           S  + Q+V EA++L + GV E+ L+ Q    + GK L GEK +   LL  L +I G+  +
Sbjct: 172 SVPMEQLVHEAQELAEQGVKELILVAQETTLY-GKDLYGEK-SLHKLLKELCKIAGIRWI 229

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R    +P +++D LI+   +   +  YL LP+Q  SD ILK M RR +  +  +II+++R
Sbjct: 230 RVLYCYPEEITDELIQVMKEESKICHYLDLPIQHASDGILKRMGRRTSKAQLIEIIEKLR 289

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              PDI + +  I GFPGET++     MD VD++ + +   F YSP   TP + M +Q++
Sbjct: 290 REIPDITLRTTLITGFPGETEEQHEELMDFVDQMEFDRLGVFTYSPEEDTPAATMPDQIE 349

Query: 384 ENVKAERLLCLQKKLRE--QQVSFNDA--CVGQIIEVLIEKHGKEKGKLVGRS----PWL 435
           E+VK +R    Q +L E  Q ++F  A   +G+ + V+IE    ++   VGR+    P +
Sbjct: 350 ESVKEDR----QAELMELQQDIAFEQAEDMIGREVLVMIEGKIADENAYVGRTYKDAPNV 405

Query: 436 QSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468
             ++  + +  +  GD  +V++T      L GE+V
Sbjct: 406 DGLIFVNTDEELMSGDFARVKVTGALEYDLIGEIV 440


>gi|258516358|ref|YP_003192580.1| RNA modification enzyme, MiaB family [Desulfotomaculum acetoxidans
           DSM 771]
 gi|257780063|gb|ACV63957.1| RNA modification enzyme, MiaB family [Desulfotomaculum acetoxidans
           DSM 771]
          Length = 435

 Score =  224 bits (571), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 142/446 (31%), Positives = 233/446 (52%), Gaps = 24/446 (5%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V + GC++N Y++  +  +F S+GY  V+  + A + V+NTC +   +  K        R
Sbjct: 8   VATLGCKVNQYEAAAIVSLFRSKGYSEVDFTEPAGVYVINTCTVTHLSDRKS-------R 60

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
            L    ++   + ++ V GC AQ    E++   P V++VVG     ++ +L+E +   ++
Sbjct: 61  QLIRRAVRTNPEAVIAVTGCYAQTSPGELMSL-PEVDLVVGTSDRDKIVDLVEASSKAEK 119

Query: 149 V-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
           +    D      +E L     G  R R   A+L IQEGC  FC++C++PY RG   SR  
Sbjct: 120 INAVADIEKACFYEELP-APAGQGRVR---AYLKIQEGCRNFCSYCIIPYARGPLRSRQP 175

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYT 266
             V++EA  L+  G  EI L G    A+   G+D   K + + ++  L  I GL RLR +
Sbjct: 176 EAVLNEAESLLAAGFKEIVLTGIQTGAY---GVDLPAKTSLAAIVEKLLRISGLSRLRLS 232

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
           +  P D+S  LI+      +  P+LH+P+QSGSDR+LK M RR+T   Y +I++ +R   
Sbjct: 233 SIEPNDLSPELIELILHSKIFCPHLHIPLQSGSDRVLKLMRRRYTTEGYAKILNNLREKM 292

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           P++A+++D + GFPGET++DF   +  +  + ++    FKYSPR GTP +   +QVD  V
Sbjct: 293 PNLAVTTDIMAGFPGETEEDFEQALGFIKDMAFSGMHVFKYSPRRGTPAAGFPQQVDARV 352

Query: 387 KAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GRSPWLQSVVLNS 442
           K +   RL+ L ++L E   ++     G  + VL E+    +G    G +P    VV   
Sbjct: 353 KEQRSRRLIALGEQLTE---NYASKFAGLTLPVLAEQPFSGRGGCWEGLTPNYLRVVFAC 409

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
             +  G+II ++I    I    G ++
Sbjct: 410 LENLSGEIIDIKIEKTGIQYQTGIII 435


>gi|154686803|ref|YP_001421964.1| YqeV [Bacillus amyloliquefaciens FZB42]
 gi|154352654|gb|ABS74733.1| YqeV [Bacillus amyloliquefaciens FZB42]
          Length = 451

 Score =  224 bits (570), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 144/444 (32%), Positives = 238/444 (53%), Gaps = 21/444 (4%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  +  +F   GYER      AD+ V+NTC +     +K    + R    
Sbjct: 8   TLGCKVNHYETEAIWQLFKDAGYERKEFEQTADVYVINTCTVTNTGDKKSRQVIRRA--- 64

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               I++  D ++ V GC AQ    EI+   P V++VVG Q   ++   +E+ R  ++ +
Sbjct: 65  ----IRQNPDGVICVTGCYAQTSPAEIMA-IPGVDIVVGTQDREKMLGYIEQYREERQPI 119

Query: 151 DTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           +   ++     FE L  V    +R R   A L IQEGC+ FCTFC++P+ RG+  SR   
Sbjct: 120 NGVGNIMKARVFEELD-VPAFTDRTR---ASLKIQEGCNNFCTFCIIPWARGLLRSRDPE 175

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKGLVRLRYTT 267
           +V+ +A++L+D G  EI L G +     G G D +   F+ LL  L + ++GL R+R ++
Sbjct: 176 EVIKQAQQLVDAGYKEIVLTGIHTG---GYGEDMKDYNFAKLLRELDTRVEGLKRIRISS 232

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
                ++D +I+     D ++ +LH+P+QSGS+ +LK M R++T   +   +++++   P
Sbjct: 233 IEASQITDEVIEVLDASDKIVRHLHIPIQSGSNTVLKRMRRKYTMEFFADRLNKLKEALP 292

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
            +A++SD IVGFPGET+++F  T   + +  +++   F YS R GTP + M +QVDENVK
Sbjct: 293 GLAVTSDVIVGFPGETEEEFMETYRFIKEHKFSELHVFPYSKRTGTPAARMEDQVDENVK 352

Query: 388 AER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
            ER   L+ L  +L ++  S  +  V +II     K   E+G  VG +     VV     
Sbjct: 353 NERVHKLIALSDQLAKEYASDYEGEVLEIIPEEAFKESDEEGMFVGYTDNYMKVVFKGTE 412

Query: 445 HNIGDIIKVRITDVKISTLYGELV 468
             IG ++KV+I         G+ V
Sbjct: 413 DVIGKLVKVKIQKAGYPYNEGQFV 436


>gi|206969427|ref|ZP_03230381.1| RNA modification enzyme, MiaB family [Bacillus cereus AH1134]
 gi|229180587|ref|ZP_04307929.1| hypothetical protein bcere0005_39320 [Bacillus cereus 172560W]
 gi|229192521|ref|ZP_04319483.1| hypothetical protein bcere0002_41730 [Bacillus cereus ATCC 10876]
 gi|206735115|gb|EDZ52283.1| RNA modification enzyme, MiaB family [Bacillus cereus AH1134]
 gi|228590945|gb|EEK48802.1| hypothetical protein bcere0002_41730 [Bacillus cereus ATCC 10876]
 gi|228603011|gb|EEK60490.1| hypothetical protein bcere0005_39320 [Bacillus cereus 172560W]
          Length = 450

 Score =  224 bits (570), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 139/432 (32%), Positives = 237/432 (54%), Gaps = 21/432 (4%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  +  +F   GYER      AD+ V+NTC +     +K    + R    
Sbjct: 8   TLGCKVNHYETEAIWQLFKQGGYERTEYEKKADVYVINTCTVTNTGDKKSRQVIRRA--- 64

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               +++  D ++ V GC AQ    EI+   P V++VVG Q   ++   +E  R  ++ +
Sbjct: 65  ----VRQNPDAVICVTGCYAQTSPAEIMA-IPGVDIVVGTQDREKMLGYIEEFRKERQPI 119

Query: 151 DTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           +   ++     +E L   D  Y   R   A L IQEGC+ FCTFC++P+ RG+  SR   
Sbjct: 120 NAVRNIMKTRVYEEL---DVPYFTDR-TRASLKIQEGCNNFCTFCIIPWARGLMRSRDGK 175

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKGLVRLRYTT 267
           +V+ +A++L+D G  EI L G +     G G D +    + LL  + +E+ GL RLR ++
Sbjct: 176 EVIKQAQQLVDAGYKEIVLTGIHTG---GYGEDIKDYNLAGLLRDMEAEVDGLKRLRISS 232

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
                +SD +I+     +V++ +LH+P+QSGS+ +LK M R++T   +++ +DR++   P
Sbjct: 233 IEASQISDEVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALP 292

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
            +AI+SD IVGFPGET+++F  T + + +  +++   F YS R GTP + M +QV E+VK
Sbjct: 293 GLAITSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVK 352

Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIE---KHGKEKGKLVGRSPWLQSVVLNSKN 444
            +R+  L +   +    +  A  G+++E++ E   K G  +G  VG +     +V     
Sbjct: 353 NDRVHRLIELSNQLAKEYASAFEGEVLEIIPEEQFKEGDREGLYVGYTDNYLKIVFEGSE 412

Query: 445 HNIGDIIKVRIT 456
             IG ++KV+IT
Sbjct: 413 ELIGKLVKVKIT 424


>gi|254519873|ref|ZP_05131929.1| predicted protein [Clostridium sp. 7_2_43FAA]
 gi|226913622|gb|EEH98823.1| predicted protein [Clostridium sp. 7_2_43FAA]
          Length = 434

 Score =  224 bits (570), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 135/398 (33%), Positives = 224/398 (56%), Gaps = 18/398 (4%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++NVY+S  M + F  +GYE V++ + AD+ V+NTC +     +K    + R R L
Sbjct: 7   TLGCRVNVYESEAMAEKFIREGYEVVDASEAADVYVINTCTVTNMGDKKSRQIISRARRL 66

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR-FGKRV 149
                    +  V V GC +Q   +E+    P V+VV+G +    +   + +AR  GK  
Sbjct: 67  NE-------NATVAVVGCYSQIAPKEV-SEIPGVDVVLGTRNKGDVVYYVNKARDEGKSQ 118

Query: 150 VDTDYSVEDK-FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           V  +  +++K FE L+I +  Y  K    AFL IQ+GC++FCT+C++PY+RG   S+   
Sbjct: 119 VHVEGVLKNKKFEELNIEE--YQDK--TRAFLKIQDGCNRFCTYCIIPYSRGSVCSKDPK 174

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE-KCTFSDLLYSLSEIKGLVRLRYTT 267
           +V++E  KL ++G  EI L G +  ++   GLD E      D++  + +++G+ R+R  +
Sbjct: 175 KVLEEVNKLAEHGFKEIILSGIHTASY---GLDLEGSVNLIDIIEEIEKVEGIERIRIGS 231

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
             P   +  +I+       L P+ HL +QSG D  LK MNRR+TA EY   ++ +R   P
Sbjct: 232 IEPAFFTPEVIEKIKKFKKLCPHFHLSLQSGCDATLKRMNRRYTAKEYADSVNLLRETMP 291

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
           D++I++D IVGFPGET+++F  T + +  I   +   FKYSPR GT  ++M +Q+D ++K
Sbjct: 292 DVSITTDVIVGFPGETEEEFNETYEFLKNIKLTKTHVFKYSPRKGTKAADMQDQLDGSIK 351

Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK 425
            +R   L +   + +  F +  +G+ ++ LIE   K K
Sbjct: 352 EKRSKLLIELSNKNEKEFIEKFIGKEMDALIEAEVKGK 389


>gi|228960578|ref|ZP_04122226.1| hypothetical protein bthur0005_40430 [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|296504804|ref|YP_003666504.1| Fe-S oxidoreductase [Bacillus thuringiensis BMB171]
 gi|228799091|gb|EEM46060.1| hypothetical protein bthur0005_40430 [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|296325856|gb|ADH08784.1| Fe-S oxidoreductase [Bacillus thuringiensis BMB171]
          Length = 450

 Score =  224 bits (570), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 139/432 (32%), Positives = 237/432 (54%), Gaps = 21/432 (4%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  +  +F   GYER      AD+ V+NTC +     +K    + R    
Sbjct: 8   TLGCKVNHYETEAIWQLFKQGGYERTEYEKKADVYVINTCTVTNTGDKKSRQVIRRA--- 64

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               +++  D ++ V GC AQ    EI+   P V++VVG Q   ++   +E  R  ++ +
Sbjct: 65  ----VRQNPDAVICVTGCYAQTSPAEIMA-IPGVDIVVGTQDREKMLGYIEEFRKERQPI 119

Query: 151 DTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           +   ++     +E L   D  Y   R   A L IQEGC+ FCTFC++P+ RG+  SR   
Sbjct: 120 NAVRNIMKTRVYEEL---DVPYFTDR-TRASLKIQEGCNNFCTFCIIPWARGLMRSRDGK 175

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKGLVRLRYTT 267
           +V+ +A++L+D G  EI L G +     G G D +    + LL  + +E+ GL RLR ++
Sbjct: 176 EVIKQAQQLVDAGYKEIVLTGIHTG---GYGEDIKDYNLAGLLRDMEAEVGGLKRLRISS 232

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
                +SD +I+     +V++ +LH+P+QSGS+ +LK M R++T   +++ +DR++   P
Sbjct: 233 IEASQISDEVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALP 292

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
            +AI+SD IVGFPGET+++F  T + + +  +++   F YS R GTP + M +QV E+VK
Sbjct: 293 GLAITSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVK 352

Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIE---KHGKEKGKLVGRSPWLQSVVLNSKN 444
            +R+  L +   +    +  A  G+++E++ E   K G  +G  VG +     +V     
Sbjct: 353 NDRVHRLIELSNQLAKEYASAFEGEVLEIIPEEQFKEGDREGLYVGYTDNYLKIVFEGSE 412

Query: 445 HNIGDIIKVRIT 456
             IG ++KV+IT
Sbjct: 413 ELIGKLVKVKIT 424


>gi|160947755|ref|ZP_02094922.1| hypothetical protein PEPMIC_01690 [Parvimonas micra ATCC 33270]
 gi|158446889|gb|EDP23884.1| hypothetical protein PEPMIC_01690 [Parvimonas micra ATCC 33270]
          Length = 443

 Score =  224 bits (570), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 130/365 (35%), Positives = 212/365 (58%), Gaps = 22/365 (6%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  M+++F  +GYE  N  D  D+ V+NTC +   +  K   F+ R + L
Sbjct: 15  TLGCKVNQYETEAMQELFKKRGYEICNENDICDVYVINTCTVTNLSDRKSRQFISRAKKL 74

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPI--VNVVVGPQTYYRLPELLERARFG-- 146
                    D ++ V GC +Q   +EI   S I  V+V++G +   R+ EL E ++    
Sbjct: 75  -------NKDAILAVVGCYSQVAPDEI---SAIEDVDVIIGTKNRARIVELCEESKKSNL 124

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           K  + ++ + +  F+ LSI     N++    A++ IQEGC+ FCT+C++PY RG   SR 
Sbjct: 125 KFNIVSELTKDCGFDVLSI----ENQESKTRAYIKIQEGCNMFCTYCIIPYARGPIKSRP 180

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRY 265
           +  + +EA KL +NG  E+ + G +V ++   GLD G      D++  LS I+ L R+R 
Sbjct: 181 IDDIYEEAVKLANNGYKEVIITGIHVGSY---GLDLGNDTRLIDVIEKLSTIENLDRIRL 237

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
           ++     +S+  +    +   +  + HL +QSG D+ILK MNRR+TA  YR+ +  I+ +
Sbjct: 238 SSIEAGIISEDFLIRLKNCKKVCEHFHLSLQSGCDKILKLMNRRYTADMYRKKVRMIKEI 297

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P++A+++D IVGFPGE D+DF+ T++ V +IG+++   FKYS R GTP  +  EQVD N
Sbjct: 298 FPNVALTTDIIVGFPGENDEDFQETLNFVKEIGFSKIHVFKYSKRKGTPAFDFKEQVDGN 357

Query: 386 VKAER 390
           VK  R
Sbjct: 358 VKKFR 362


>gi|328554278|gb|AEB24770.1| ribosomal protein S12 methylthiotransferase [Bacillus
           amyloliquefaciens TA208]
 gi|328912675|gb|AEB64271.1| ribosomal protein S12 methylthiotransferase [Bacillus
           amyloliquefaciens LL3]
          Length = 451

 Score =  224 bits (570), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 144/444 (32%), Positives = 237/444 (53%), Gaps = 21/444 (4%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  +  +F   GYER      AD+ V+NTC +     +K    + R    
Sbjct: 8   TLGCKVNHYETEAIWQLFKDAGYERKEFEQTADVYVINTCTVTNTGDKKSRQVIRRA--- 64

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               I++  D ++ V GC AQ    EI+   P V++VVG Q   ++   +E+ R  ++ +
Sbjct: 65  ----IRQNPDGVICVTGCYAQTSPAEIMA-IPGVDIVVGTQDREKMLGYIEQYREERQPI 119

Query: 151 DTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           +   ++     FE L  V    +R R   A L IQEGC+ FCTFC++P+ RG+  SR   
Sbjct: 120 NGVGNIMKARVFEELD-VPAFTDRTR---ASLKIQEGCNNFCTFCIIPWARGLLRSRDPE 175

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKGLVRLRYTT 267
           +V+ +A++L+D G  EI L G +     G G D +   F+ LL  L + ++GL R+R ++
Sbjct: 176 EVIKQAQQLVDAGYKEIVLTGIHTG---GYGEDMKDYNFAKLLRELDTRVEGLKRIRISS 232

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
                ++D +I+     D ++ +LH+P+QSGS+ +LK M R++T   +   +++++   P
Sbjct: 233 IEASQITDEVIEVLDASDKIVRHLHIPIQSGSNTVLKRMRRKYTMEFFADRLNKLKEALP 292

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
            +A++SD IVGFPGET+++F  T   + +  +++   F YS R GTP + M +QVDENVK
Sbjct: 293 GLAVTSDVIVGFPGETEEEFMETYRFIKEHKFSELHVFPYSKRTGTPAARMEDQVDENVK 352

Query: 388 AER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
            ER   L+ L  +L ++  S  +  V +II     K   E G  VG +     VV     
Sbjct: 353 NERVHKLIALSDQLAKEYASDYEGEVLEIIPEETFKESDEDGMFVGYTDNYMKVVFKGSE 412

Query: 445 HNIGDIIKVRITDVKISTLYGELV 468
             IG ++KV+I         G+ V
Sbjct: 413 DLIGKLVKVKIQKAGYPYNEGQFV 436


>gi|228910147|ref|ZP_04073966.1| hypothetical protein bthur0013_42950 [Bacillus thuringiensis IBL
           200]
 gi|228849430|gb|EEM94265.1| hypothetical protein bthur0013_42950 [Bacillus thuringiensis IBL
           200]
          Length = 450

 Score =  223 bits (569), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 139/432 (32%), Positives = 237/432 (54%), Gaps = 21/432 (4%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  +  +F   GYER      AD+ V+NTC +     +K    + R    
Sbjct: 8   TLGCKVNHYETEAIWQLFKQGGYERTEYEKKADVYVINTCTVTNTGDKKSRQVIRRA--- 64

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               +++  D ++ V GC AQ    EI+   P V++VVG Q   ++   +E  R  ++ +
Sbjct: 65  ----VRQNPDAVICVTGCYAQTSPAEIMA-IPGVDIVVGTQDREKMLGYIEEFRKERQPI 119

Query: 151 DTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           +   ++     +E L   D  Y   R   A L IQEGC+ FCTFC++P+ RG+  SR   
Sbjct: 120 NAVRNIMKTRVYEEL---DVPYFTDR-TRASLKIQEGCNNFCTFCIIPWARGLMRSRDGK 175

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKGLVRLRYTT 267
           +V+ +A++L+D G  EI L G +     G G D +    + LL  + +E+ GL RLR ++
Sbjct: 176 EVIKQAQQLVDAGYKEIVLTGIHTG---GYGEDIKDYNLAGLLRDMEAEVGGLKRLRISS 232

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
                +SD +I+     +V++ +LH+P+QSGS+ +LK M R++T   +++ +DR++   P
Sbjct: 233 IEASQISDEVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALP 292

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
            +AI+SD IVGFPGET+++F  T + + +  +++   F YS R GTP + M +QV E+VK
Sbjct: 293 GLAITSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVK 352

Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIE---KHGKEKGKLVGRSPWLQSVVLNSKN 444
            +R+  L +   +    +  A  G+++E++ E   K G  +G  VG +     +V     
Sbjct: 353 NDRVHRLIELSNQLAKEYASAFEGEVLEIIPEEQFKEGDREGLYVGYTDNYLKIVFEGSE 412

Query: 445 HNIGDIIKVRIT 456
             IG ++KV+IT
Sbjct: 413 ELIGKLVKVKIT 424


>gi|308174331|ref|YP_003921036.1| 30S ribosomal protein S12 methylthiotransferase [Bacillus
           amyloliquefaciens DSM 7]
 gi|307607195|emb|CBI43566.1| ribosomal protein S12 methylthiotransferase [Bacillus
           amyloliquefaciens DSM 7]
          Length = 451

 Score =  223 bits (569), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 144/444 (32%), Positives = 237/444 (53%), Gaps = 21/444 (4%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  +  +F   GYER      AD+ V+NTC +     +K    + R    
Sbjct: 8   TLGCKVNHYETEAIWQLFKDAGYERKEFEQTADVYVINTCTVTNTGDKKSRQVIRRA--- 64

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               I++  D ++ V GC AQ    EI+   P V++VVG Q   ++   +E+ R  ++ +
Sbjct: 65  ----IRQNPDGVICVTGCYAQTSPAEIMA-IPGVDIVVGTQDREKMLGYIEQYREERQPI 119

Query: 151 DTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           +   ++     FE L  V    +R R   A L IQEGC+ FCTFC++P+ RG+  SR   
Sbjct: 120 NGVGNIMKARVFEELD-VPAFTDRTR---ASLKIQEGCNNFCTFCIIPWARGLLRSRDPE 175

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKGLVRLRYTT 267
           +V+ +A++L+D G  EI L G +     G G D +   F+ LL  L + ++GL R+R ++
Sbjct: 176 EVIKQAQQLVDAGYKEIVLTGIHTG---GYGEDMKDYNFAKLLRELDTRVEGLKRIRISS 232

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
                ++D +I+     D ++ +LH+P+QSGS+ +LK M R++T   +   +++++   P
Sbjct: 233 IEASQITDEVIEVLDASDKIVRHLHIPIQSGSNTVLKRMRRKYTMEFFADRLNKLKEALP 292

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
            +A++SD IVGFPGET+++F  T   + +  +++   F YS R GTP + M +QVDENVK
Sbjct: 293 GLAVTSDVIVGFPGETEEEFMETYRFIKEHKFSELHVFPYSKRTGTPAARMEDQVDENVK 352

Query: 388 AER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
            ER   L+ L  +L ++  S  +  V +II     K   E G  VG +     VV     
Sbjct: 353 NERVHKLIALSDQLAKEYASDYEGEVLEIIPEETFKESDEDGMFVGYTDNYMKVVFKGTE 412

Query: 445 HNIGDIIKVRITDVKISTLYGELV 468
             IG ++KV+I         G+ V
Sbjct: 413 DLIGKLVKVKIQKAGYPYNEGQFV 436


>gi|149184079|ref|ZP_01862427.1| hypothetical protein BSG1_17550 [Bacillus sp. SG-1]
 gi|148848213|gb|EDL62515.1| hypothetical protein BSG1_17550 [Bacillus sp. SG-1]
          Length = 445

 Score =  223 bits (569), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 137/444 (30%), Positives = 245/444 (55%), Gaps = 21/444 (4%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  +  +F  QGYER+   + AD+ V+NTC +     +K    + R    
Sbjct: 11  TLGCKVNHYETEAIWQLFKEQGYERLEYENTADVYVINTCTVTNTGDKKSRQVIRRA--- 67

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               I++  D ++ V GC AQ    EI+   P V++VVG Q   ++ E +E+ +  ++ +
Sbjct: 68  ----IRKNPDAVICVTGCYAQTSPAEIMA-IPGVDIVVGTQDRRKMLEYIEQFKEERQPI 122

Query: 151 DTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           +   ++     +E L  V    +R R   A L IQEGC+ FCTFC++P+ RG+  SR   
Sbjct: 123 NGVGNIMKNRVYEELQ-VPAFTDRTR---ASLKIQEGCNNFCTFCIIPWARGLMRSREPE 178

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE-IKGLVRLRYTT 267
           +V+ +A++L+D G  EI L G +     G G D +    + LL  L E + GL R+R ++
Sbjct: 179 EVIRQAQQLVDAGYKEIVLTGIHTG---GYGEDMKDYNLAMLLRDLEEKVDGLKRIRISS 235

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
                ++D +I+   +  +++ +LH+P+QSGS+ +LK M R++T   + + +++++   P
Sbjct: 236 IEASQLTDEVIEVIDNSKLVVRHLHIPLQSGSNTVLKRMRRKYTMEFFAERLEKLKKALP 295

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
            +A++SD IVGFPGET+++F+ T + + +  +++   F YS R GTP + M +Q+DE +K
Sbjct: 296 GLAVTSDVIVGFPGETEEEFKETYNFIKEHKFSELHVFPYSKRTGTPAARMTDQIDEEIK 355

Query: 388 AE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
            E   RL+ L  +L ++  S  +  V ++I   + K   + G  VG +     VV  +  
Sbjct: 356 NERVHRLIELSNQLAKEYASQFEYEVLEVIPEEVYKEQPDSGLYVGYTDNYLKVVFPATE 415

Query: 445 HNIGDIIKVRITDVKISTLYGELV 468
             +G ++KV++T        G+ V
Sbjct: 416 DMVGKLVKVKLTKAGYPFNEGQFV 439


>gi|118444753|ref|YP_878562.1| MiaB-like tRNA modifying enzyme [Clostridium novyi NT]
 gi|118135209|gb|ABK62253.1| MiaB-like tRNA modifying enzyme [Clostridium novyi NT]
          Length = 433

 Score =  223 bits (569), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 143/441 (32%), Positives = 237/441 (53%), Gaps = 17/441 (3%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N+Y+S  M + F   GYE V   + AD+ V+NTC +   + +K    L R +  
Sbjct: 7   TLGCRVNMYESEAMAEKFIKNGYEVVEFDEMADVYVVNTCTVTNMSDKKSRQMLSRAK-- 64

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF-GKRV 149
                ++  + ++   GC  Q   E++ +    V+V++G +    +   + RA+  GK +
Sbjct: 65  -----RKNPESIIAAVGCYTQIAPEKV-KEIGDVDVILGTRNKGDIVYWVNRAKEEGKTI 118

Query: 150 VD-TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           V+  D     KFE L+I +  Y  K    AFL IQ+GC+ FC++C++P+ RG   S++  
Sbjct: 119 VEVNDVLRNKKFEELNIEE--YQDK--TRAFLKIQDGCNNFCSYCLIPFARGAVCSKNPE 174

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
            ++DE +KL  +G  EI L G +++++ G  L+G+    + +L  + EI G+ R+R  + 
Sbjct: 175 IIIDEVKKLAAHGFKEIILSGIDISSY-GVDLEGDWNLLT-ILKKIDEIDGITRVRIGSI 232

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
            P   ++  IK  G L  L P+ HL +QSG +  LK MNR++T  E+  ++  +R    D
Sbjct: 233 GPEFFNEDRIKEIGKLKKLCPHFHLSLQSGCNETLKRMNRKYTTEEFENVVKLLRKYIKD 292

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           I+I++D IVGFPGET ++F  T + + +I  ++   FKYSPR GT    M  QVD N+K 
Sbjct: 293 ISITTDIIVGFPGETIEEFDETYEYLKRIELSKMHIFKYSPRTGTRAEKMENQVDGNIKE 352

Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNSKNHNI 447
           ER   L K     +  F D  +G+ +EVL E+    K G   G +P    V+  SK    
Sbjct: 353 ERSKALIKLNEINEKKFIDKFIGEDMEVLYEQQCNNKEGYYEGYTPNYIKVISESKEDLS 412

Query: 448 GDIIKVRITDVKISTLYGELV 468
           G I+  ++ + K     G+++
Sbjct: 413 GKIVNTKLIETKDEYAVGKII 433


>gi|229174985|ref|ZP_04302504.1| hypothetical protein bcere0006_40680 [Bacillus cereus MM3]
 gi|228608446|gb|EEK65749.1| hypothetical protein bcere0006_40680 [Bacillus cereus MM3]
          Length = 450

 Score =  223 bits (569), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 139/432 (32%), Positives = 236/432 (54%), Gaps = 21/432 (4%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  +  +F   GYER      AD+ V+NTC +     +K    + R    
Sbjct: 8   TLGCKVNHYETEAIWQLFKQGGYERTEYEKKADVYVINTCTVTNTGDKKSRQVIRRA--- 64

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               +++  D ++ V GC AQ    EI+   P V++VVG Q   ++   +E  R  ++ +
Sbjct: 65  ----VRQNPDAVICVTGCYAQTSPAEIMA-IPGVDIVVGTQDREKMLGYIEEFRKERQPI 119

Query: 151 DTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           +   ++     +E L   D  Y   R   A L IQEGC+ FCTFC++P+ RG+  SR   
Sbjct: 120 NAVRNIMKTRVYEEL---DVPYFTDR-TRASLKIQEGCNNFCTFCIIPWARGLMRSRDGK 175

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKGLVRLRYTT 267
           +V+ +A++L+D G  EI L G +     G G D +    + LL  + +E+ GL RLR ++
Sbjct: 176 EVIKQAQQLVDAGYKEIVLTGIHTG---GYGEDIKDYNLAGLLRDMEAEVGGLKRLRISS 232

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
                +SD +I+     +V++ +LH+P+QSGS+ +LK M R++T   +++ +DR++   P
Sbjct: 233 IEASQISDEVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALP 292

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
            +AI+SD IVGFPGET+++F  T + + +  +++   F YS R GTP + M +QV E+VK
Sbjct: 293 GLAITSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVK 352

Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIE---KHGKEKGKLVGRSPWLQSVVLNSKN 444
            +R+  L +   +    +     G+++E++ E   K G  KG  VG +     +V     
Sbjct: 353 NDRVHRLIELSNQLAKEYASQFEGEVLEIIPEEQFKEGDRKGLYVGYTDNYLKIVFEGSE 412

Query: 445 HNIGDIIKVRIT 456
             IG ++KV+IT
Sbjct: 413 ELIGKLVKVKIT 424


>gi|326389860|ref|ZP_08211424.1| MiaB-like tRNA modifying enzyme [Thermoanaerobacter ethanolicus JW
           200]
 gi|325994128|gb|EGD52556.1| MiaB-like tRNA modifying enzyme [Thermoanaerobacter ethanolicus JW
           200]
          Length = 455

 Score =  223 bits (568), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 140/448 (31%), Positives = 241/448 (53%), Gaps = 37/448 (8%)

Query: 33  GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92
           GC++N Y++  M ++F   GYE V+  + AD+ V+NTC +  ++  K    + + R    
Sbjct: 29  GCKVNQYETEVMAELFKKAGYEVVDFNEKADVYVINTCTVTNRSDMKSRQEIRKAR---- 84

Query: 93  SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDT 152
              K+  D LVV AGC  Q   EE     P V++ +G +   ++ EL+E           
Sbjct: 85  ---KKNPDALVVAAGCYVQVSPEEAFS-LPEVDIAIGTKNKDKIVELVE----------- 129

Query: 153 DYSVEDKFERLSIVDGGYNRKR----GVTAF-------LTIQEGCDKFCTFCVVPYTRGI 201
                 K ++LS+V+    +K     GVTA+       + IQ+GC+++CT+C++PY RG 
Sbjct: 130 --EFTQKNQKLSVVNNIMTQKEYEEFGVTAYTERTRAYIKIQDGCNQYCTYCIIPYARGP 187

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
             SR   +V+DE ++  D+G  EI L G ++ ++   G D +     D++  + EI G+ 
Sbjct: 188 VRSRDPKKVLDEVKRFADSGYKEIVLTGIHIASY---GKDLKNIGLLDIIKMIHEIDGIK 244

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R ++  P  +++  +K   +L  +  + H+ +QSG D  LK M RR+T  EY+ +IDR
Sbjct: 245 RIRLSSIEPTFLTEEFVKEIANLPKMCRHYHVSLQSGCDETLKRMGRRYTTKEYKSVIDR 304

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R    D+AI++D +VGFPGET+++F  T   V++I +++   FKYS R GT   N   Q
Sbjct: 305 LREYIKDVAITTDVMVGFPGETEEEFLKTYKFVEEICFSKMHVFKYSRRKGTRAYNFPNQ 364

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRSPWLQSVVL 440
           V  ++K +R   L +     +  F ++ +G+ +EVL E+  K  +G + G +    SV +
Sbjct: 365 VANHIKEDRSKKLIELSNRCEYKFMESFIGKTLEVLFEQPVKNMEGYVEGLTDNYLSVAV 424

Query: 441 NSKNHNI-GDIIKVRITDVKISTLYGEL 467
                 +  +I  V+I ++K + L GE+
Sbjct: 425 KGDRKLLRNEIFPVKIKEIKDNLLIGEI 452


>gi|332981300|ref|YP_004462741.1| MiaB family RNA modification protein [Mahella australiensis 50-1
           BON]
 gi|332698978|gb|AEE95919.1| RNA modification enzyme, MiaB family [Mahella australiensis 50-1
           BON]
          Length = 443

 Score =  223 bits (568), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 135/430 (31%), Positives = 232/430 (53%), Gaps = 22/430 (5%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y+S  M  +F   GYE V   +DAD+ V+NTC +   +  K        R +
Sbjct: 8   TLGCKVNQYESEAMVGLFRKAGYEIVPFEEDADVYVINTCTVTNISDRKS-------RQM 60

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPI--VNVVVGPQTYYRLPELLERARFGKR 148
               ++   + +V V GC  Q   +E+   S I  V++++G    + + EL+++A     
Sbjct: 61  IRRAVRRNPNAVVAVTGCYTQRAADEV---SSIEGVDLIIGTDERHNIVELVQKAHGADG 117

Query: 149 VVDTDYSVED--KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
            ++    + +   FE + I D    + R   AF+ I++GCD++CT+C++PY RG   SR+
Sbjct: 118 PINVVKDIRNVKSFEEIPI-DSYEGKTR---AFVKIEDGCDRYCTYCIIPYARGPVRSRA 173

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
              +VDE  +L  +G  EI L G +V ++             ++++ +S   G+ R+R +
Sbjct: 174 PQDIVDEVSRLSQSGFKEIVLTGIHVASYGKDIGGIGLIDIIEMVHGIS---GIERIRLS 230

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
           +  P  + +  I    +L  + P+ H+ +QSG D +L+ M R +T   Y+ I++R+R   
Sbjct: 231 SVEPMLLDNDFITRIKELPKVCPHFHISLQSGCDTVLRRMGRCYTTAVYKDIVNRLRKAI 290

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           PD+AI++D IVGFPGETD +F  T+  V +I ++Q   F YSPR GTP + + +QV  ++
Sbjct: 291 PDVAITTDVIVGFPGETDGEFEQTLAFVKEIAFSQVHVFPYSPREGTPAAKLKDQVPPHI 350

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHN 446
           K +R   + +  RE ++SF  + +G+I+ VL E H  E G   G +P    V++ S    
Sbjct: 351 KEQRSHMMLQMARELKMSFMRSYIGRIMPVLFE-HEIEDGYYEGLTPNYIRVLMPSDIDI 409

Query: 447 IGDIIKVRIT 456
            G II V++ 
Sbjct: 410 SGRIINVQLN 419


>gi|83589452|ref|YP_429461.1| MiaB-like tRNA modifying enzyme [Moorella thermoacetica ATCC 39073]
 gi|83572366|gb|ABC18918.1| MiaB-like tRNA modifying enzyme [Moorella thermoacetica ATCC 39073]
          Length = 450

 Score =  223 bits (568), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 153/452 (33%), Positives = 235/452 (51%), Gaps = 32/452 (7%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R  + S GC++N  +   ++ +F   GY+ V   ++AD+ V++TC +   +  K      
Sbjct: 5   RVALVSLGCKVNQNEVEALKHLFQEAGYQVVPFPEEADVYVVHTCTVTHISDRKS----- 59

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
             R L    I+   + +V V GC AQ    E+L   P V++VVG +  +RL EL+ RAR 
Sbjct: 60  --RQLIRRAIRANPEAVVAVTGCYAQVAPGEVLA-IPGVDLVVGTRDRHRLVELVARARE 116

Query: 146 GKRVVDT--DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           G   ++    +   + FE L +V+   +R R   AFL IQEGC +FCT+C+VPY RG   
Sbjct: 117 GTAPINAVRPHEKGETFEELPLVE--VSRAR---AFLKIQEGCQEFCTYCIVPYARGPLR 171

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR    +  E R+L+D G  EI L G +  A+ G+ L G+    + LL +L ++ GL RL
Sbjct: 172 SRDPELIRAEVRRLVDAGYLEIVLTGVHTGAY-GRDLAGD-IDLAGLLKNLVQVPGLRRL 229

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R ++  P D +  L        ++ P+ H+P+QSG D IL  M RR+T   Y ++I  +R
Sbjct: 230 RISSIDPLDFTPELKAVLTGEGIICPHFHIPLQSGDDAILGRMGRRYTGQYYLELIASLR 289

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           S RP  A +SD +VGFPGET+  F+ T+ +V +   A    F YSPR GTP + M  QV 
Sbjct: 290 SGRPGAAFTSDVMVGFPGETEAQFQNTLAVVKEASLAGIHVFPYSPRRGTPAAAMPGQVA 349

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQS------ 437
             VK +R   L +  R     +    + Q ++VL+E      G L G  P  Q       
Sbjct: 350 AEVKKDRERRLLQLGRRLSRQYAREFLTQTLDVLVE------GPLPG-CPDCQEGLTGNY 402

Query: 438 --VVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
             V   +     G ++ VR+ +++ S ++G+L
Sbjct: 403 LRVAFPAPADLTGQLVPVRLQELRGSLIWGKL 434


>gi|30022389|ref|NP_834020.1| Fe-S oxidoreductase [Bacillus cereus ATCC 14579]
 gi|218232497|ref|YP_002369119.1| hypothetical protein BCB4264_A4429 [Bacillus cereus B4264]
 gi|218899478|ref|YP_002447889.1| RNA modification enzyme, MiaB family [Bacillus cereus G9842]
 gi|228902835|ref|ZP_04066979.1| hypothetical protein bthur0014_40060 [Bacillus thuringiensis IBL
           4222]
 gi|228954596|ref|ZP_04116620.1| hypothetical protein bthur0006_39650 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|229071815|ref|ZP_04205029.1| hypothetical protein bcere0025_39840 [Bacillus cereus F65185]
 gi|229081572|ref|ZP_04214069.1| hypothetical protein bcere0023_42040 [Bacillus cereus Rock4-2]
 gi|229129590|ref|ZP_04258559.1| hypothetical protein bcere0015_40320 [Bacillus cereus BDRD-Cer4]
 gi|229152512|ref|ZP_04280703.1| hypothetical protein bcere0011_40490 [Bacillus cereus m1550]
 gi|29897947|gb|AAP11221.1| Fe-S oxidoreductase [Bacillus cereus ATCC 14579]
 gi|218160454|gb|ACK60446.1| conserved hypothetical protein [Bacillus cereus B4264]
 gi|218544457|gb|ACK96851.1| RNA modification enzyme, MiaB family [Bacillus cereus G9842]
 gi|228630943|gb|EEK87581.1| hypothetical protein bcere0011_40490 [Bacillus cereus m1550]
 gi|228653858|gb|EEL09727.1| hypothetical protein bcere0015_40320 [Bacillus cereus BDRD-Cer4]
 gi|228701728|gb|EEL54217.1| hypothetical protein bcere0023_42040 [Bacillus cereus Rock4-2]
 gi|228711294|gb|EEL63255.1| hypothetical protein bcere0025_39840 [Bacillus cereus F65185]
 gi|228805042|gb|EEM51637.1| hypothetical protein bthur0006_39650 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228856791|gb|EEN01307.1| hypothetical protein bthur0014_40060 [Bacillus thuringiensis IBL
           4222]
          Length = 450

 Score =  223 bits (567), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 139/432 (32%), Positives = 237/432 (54%), Gaps = 21/432 (4%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  +  +F   GYER      AD+ V+NTC +     +K    + R    
Sbjct: 8   TLGCKVNHYETEAIWQLFKQGGYERTEYEKKADVYVINTCTVTNTGDKKSRQVIRRA--- 64

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               +++  D ++ V GC AQ    EI+   P V++VVG Q   ++   +E  R  ++ +
Sbjct: 65  ----VRQNPDAVICVTGCYAQTSPAEIMA-IPGVDIVVGTQDREKMLGYIEEFRKERQPI 119

Query: 151 DTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           +   ++     +E L   D  Y   R   A L IQEGC+ FCTFC++P+ RG+  SR   
Sbjct: 120 NAVRNIMKTRVYEEL---DVPYFTDR-TRASLKIQEGCNNFCTFCIIPWARGLMRSRDGK 175

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKGLVRLRYTT 267
           +V+ +A++L+D G  EI L G +     G G D +    + LL  + +E+ GL RLR ++
Sbjct: 176 EVIKQAQQLVDAGYKEIVLTGIHTG---GYGEDIKDYNLAGLLRDMEAEVGGLKRLRISS 232

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
                +SD +I+     +V++ +LH+P+QSGS+ +LK M R++T   +++ +DR++   P
Sbjct: 233 IEASQISDEVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALP 292

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
            +AI+SD IVGFPGET+++F  T + + +  +++   F YS R GTP + M +QV E+VK
Sbjct: 293 GLAITSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVK 352

Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIE---KHGKEKGKLVGRSPWLQSVVLNSKN 444
            +R+  L +   +    +  A  G+++E++ E   K G  +G  VG +     +V     
Sbjct: 353 NDRVHRLIELSNQLAKEYASAFEGEVLEIIPEEQFKDGDREGLYVGYTDNYLKIVFEGSE 412

Query: 445 HNIGDIIKVRIT 456
             IG ++KV+IT
Sbjct: 413 ELIGKLVKVKIT 424


>gi|188589299|ref|YP_001920259.1| hypothetical protein CLH_0864 [Clostridium botulinum E3 str. Alaska
           E43]
 gi|188499580|gb|ACD52716.1| conserved hypothetical protein [Clostridium botulinum E3 str.
           Alaska E43]
          Length = 434

 Score =  223 bits (567), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 140/430 (32%), Positives = 236/430 (54%), Gaps = 20/430 (4%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  M + F  +GY   +  D AD+ V+NTC +     +K    + + R  
Sbjct: 7   TLGCRVNQYETEAMTEKFIREGYSVTDFDDFADVYVINTCTVTNMGDKKSRQIISKAR-- 64

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV- 149
                +   + ++ V GC +Q   EE+ +    V+VV+G +    +   + +AR  K + 
Sbjct: 65  -----RTNSNAIIAVVGCYSQIAPEEVSKIEG-VDVVLGTRNKGDIVYFVNKARDEKAIQ 118

Query: 150 VDTDYSVEDK-FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           V  +  +++K FE L+I +  Y  K    AFL IQ+GC++FCTFC++PY RG   S+   
Sbjct: 119 VSVNEVLKNKEFEELNIEE--YQDK--TRAFLKIQDGCNRFCTFCLIPYARGATCSKKPE 174

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYTT 267
           +V++E +KL ++G  E+ L G +  ++   G+D G   T   LL  + +I G+ R+R  +
Sbjct: 175 KVIEEVKKLAEHGFKEVILSGIHTASY---GVDLGAGVTLISLLEDIEKIDGIDRVRIGS 231

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
             P   +D +I    ++  L P+ HL +QSGSD  LK MNRR+TA EY + +  +R    
Sbjct: 232 IEPAFFTDEVINKIKNMKKLCPHFHLSLQSGSDATLKRMNRRYTADEYAKTVQTLRDNIQ 291

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
           D++I++D IVGFPGET+++F  T + + K+   +   FKYSPR GT  + M  Q+D  +K
Sbjct: 292 DVSITTDLIVGFPGETEEEFNETYEYLKKLKLTKVHLFKYSPRKGTKAAEMPNQIDGTIK 351

Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSP-WLQSVVLNSKNH 445
            +R   L +  +E +V F    VG+ + VLIE+    K G   G +  ++++ + ++   
Sbjct: 352 DKRSKILSELNKENEVDFVKNLVGREMGVLIERECSNKPGIFEGYTKNYVKAEISDASKE 411

Query: 446 NIGDIIKVRI 455
            IG I+   I
Sbjct: 412 MIGKIMDCNI 421


>gi|228941477|ref|ZP_04104027.1| hypothetical protein bthur0008_41150 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228974407|ref|ZP_04134975.1| hypothetical protein bthur0003_41610 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228981002|ref|ZP_04141304.1| hypothetical protein bthur0002_41640 [Bacillus thuringiensis Bt407]
 gi|228778662|gb|EEM26927.1| hypothetical protein bthur0002_41640 [Bacillus thuringiensis Bt407]
 gi|228785243|gb|EEM33254.1| hypothetical protein bthur0003_41610 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228818127|gb|EEM64202.1| hypothetical protein bthur0008_41150 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|326942093|gb|AEA17989.1| Fe-S oxidoreductase [Bacillus thuringiensis serovar chinensis
           CT-43]
          Length = 450

 Score =  223 bits (567), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 139/432 (32%), Positives = 237/432 (54%), Gaps = 21/432 (4%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  +  +F   GYER      AD+ V+NTC +     +K    + R    
Sbjct: 8   TLGCKVNHYETEAIWQLFKQGGYERTEYEKKADVYVINTCTVTNTGDKKSRQVIRRA--- 64

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               +++  D ++ V GC AQ    EI+   P V++VVG Q   ++   +E  R  ++ +
Sbjct: 65  ----VRQNPDAVICVTGCYAQTSPAEIMA-IPGVDIVVGTQDREKMLGYIEEFRKERQPI 119

Query: 151 DTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           +   ++     +E L   D  Y   R   A L IQEGC+ FCTFC++P+ RG+  SR   
Sbjct: 120 NAVRNIMKTRVYEEL---DVPYFTDR-TRASLKIQEGCNNFCTFCIIPWARGLMRSRDGK 175

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKGLVRLRYTT 267
           +V+ +A++L+D G  EI L G +     G G D +    + LL  + +E+ GL RLR ++
Sbjct: 176 EVIKQAQQLVDAGYKEIVLTGIHTG---GYGEDIKDYNLAGLLRDMEAEVGGLKRLRISS 232

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
                +SD +I+     +V++ +LH+P+QSGS+ +LK M R++T   +++ +DR++   P
Sbjct: 233 IEASQISDEVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALP 292

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
            +AI+SD IVGFPGET+++F  T + + +  +++   F YS R GTP + M +QV E+VK
Sbjct: 293 GLAITSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVK 352

Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIE---KHGKEKGKLVGRSPWLQSVVLNSKN 444
            +R+  L +   +    +  A  G+++E++ E   K G  +G  VG +     +V     
Sbjct: 353 NDRVHRLIELSNQLAKEYASAFEGEVLEIIPEEQFKDGDREGLYVGYTDNYLKIVFEGSE 412

Query: 445 HNIGDIIKVRIT 456
             IG ++KV+IT
Sbjct: 413 ELIGKLVKVKIT 424


>gi|291166122|gb|EFE28168.1| Fe-S oxidoreductase [Filifactor alocis ATCC 35896]
          Length = 424

 Score =  223 bits (567), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 137/390 (35%), Positives = 218/390 (55%), Gaps = 16/390 (4%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  ME++F    Y+ VN  + AD+ V+NTC +   + +K    + R + +
Sbjct: 2   TLGCKVNQYETEAMEELFLQNQYDLVNFDEIADVYVVNTCTVTAMSDKKSRQMIRRTKKI 61

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL-PELLERARFGKRV 149
                    + +VVV GC +Q   EE+LR S  VN+V+G      +  E+L  +   KR+
Sbjct: 62  -------NPNAIVVVTGCYSQKAPEEVLRISE-VNLVMGTSNRNMIIREVLRTSPEDKRI 113

Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209
           V  D      FE ++I   G + +    AF+ IQ+GCD+FCT+C++P+TRG   SRSL  
Sbjct: 114 VVDDIMKRKDFEEMNITTAGDHTR----AFVKIQDGCDRFCTYCIIPFTRGPVRSRSLEN 169

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSH 269
           +V E +KL++NG  E+ L G +V ++   G D +K T  D++  LS I GL R+R ++  
Sbjct: 170 IVYEVKKLVNNGYKEVVLTGIHVASY---GKDTKKETLIDVIERLSTIDGLERIRTSSVE 226

Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329
           P  +++  +K    ++   P+ HL +QSG ++ILK MNRR+TA EYR  +++IR      
Sbjct: 227 PIIITEDFLKRVSQVEQFCPHFHLSLQSGCNKILKKMNRRYTAEEYRNAVEQIRKTYTYP 286

Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAE 389
           AI++D IVGFP E + DF  T   +++I   +   F YSPR GT      E V +  K  
Sbjct: 287 AITTDVIVGFPEEEESDFEETKKFLEEIKLYEMHVFPYSPREGTVAYERGETVTKEEKHV 346

Query: 390 RLLCLQKKLREQQVSFNDACVGQIIEVLIE 419
           R   L     + +  F ++ +GQ++ VL E
Sbjct: 347 RSNTLISISNQNKKEFMESQIGQVLPVLFE 376


>gi|169832193|ref|YP_001718175.1| MiaB-like tRNA modifying protein [Candidatus Desulforudis
           audaxviator MP104C]
 gi|169639037|gb|ACA60543.1| MiaB-like tRNA modifying enzyme [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 450

 Score =  223 bits (567), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 146/450 (32%), Positives = 233/450 (51%), Gaps = 36/450 (8%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N  ++  +  +F  +GY+ +   + AD+ V+NTC +  +   K        R +
Sbjct: 8   TLGCKVNQAETQGLAALFRDRGYKVIPFEETADVYVVNTCTVTREGDRKS-------RQV 60

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF----- 145
               ++   + LVVV GC AQ   EE     P V++V+G     R+ +L+E+A       
Sbjct: 61  VRRAVRANPEALVVVTGCYAQVAPEEA-GAIPGVSLVIGTSGRERIVDLVEQAAARCPVP 119

Query: 146 ------GKRVVDTDYSVEDKFERLS-IVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
                 G  +   D     +FE L    D G  R     AF+ +QEGC  FCT+C+VPY 
Sbjct: 120 AEKKGPGPFLAVGDIEQAREFEDLPGTADPGRTR-----AFIKVQEGCRDFCTYCIVPYA 174

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258
           RG   SR   +V++ AR L+D G  E+ L G N+ A+ G+ L  E      L+  L  I 
Sbjct: 175 RGPLRSRPPERVLELARGLVDRGYSELVLTGVNLGAY-GRDLGTE--NLPGLVRRLVRIP 231

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           GL RLR ++  P +++  L++A  +  V  P+ H+P+QSGSD +L  M RR++  E+  +
Sbjct: 232 GLARLRLSSVEPNEITRELVEAVAENPVCAPHFHIPLQSGSDSVLSRMGRRYSTGEFTGL 291

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           +D +R+  P++A+++D +VGFPGET  + R +++ V +IG+A    F YSPR GTP ++ 
Sbjct: 292 VDMVRARVPEVAVTADVMVGFPGETAAEHRESLEYVRRIGFAGLHVFVYSPRRGTPAASF 351

Query: 379 LEQVDENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWL 435
            + V   VK ER   +L L ++LR++   F     G+ +EVL+E      G   G +P  
Sbjct: 352 PDPVPYRVKKERSREMLALGRELRDR---FASRYRGRTVEVLVES--VSGGVASGYTPNY 406

Query: 436 QSVVLNSKNHNIGDIIKVRITDVKISTLYG 465
             V   +     G I+KV     +   L G
Sbjct: 407 LRVFFKNGPELAGRIVKVYADGAEQGNLRG 436


>gi|227486728|ref|ZP_03917044.1| 2-methylthioadenine synthetase [Anaerococcus lactolyticus ATCC
           51172]
 gi|227235316|gb|EEI85331.1| 2-methylthioadenine synthetase [Anaerococcus lactolyticus ATCC
           51172]
          Length = 432

 Score =  222 bits (566), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 135/439 (30%), Positives = 238/439 (54%), Gaps = 18/439 (4%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y+S  +E++F ++G+ER    ++A + V+NTC +   +  K    + R R  
Sbjct: 9   TLGCKVNQYESEAVEEIFKARGFER--KENNASVYVINTCTVTNMSDRKSRQMISRAR-- 64

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
                K+  D ++ V GC +Q + E++ +    V++++G +    + +L E     K  +
Sbjct: 65  -----KDNPDAIIAVMGCYSQVKPEDVAKIEG-VDIILGSRNKEEVVDLCEDMLQNKEAI 118

Query: 151 DTDYSV--EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           D   SV  E  FE L I     N+     A++ IQ+GC+ +C++C++PY RG  +SR + 
Sbjct: 119 DQVISVSEEKSFEDLEI----SNQTEMTRAYMKIQDGCNMYCSYCLIPYARGNVVSRPMD 174

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
            +V EA +L +NG  EI L G +V ++     DG   +  D++ +++++ G+ R+R ++ 
Sbjct: 175 SIVKEAERLAENGFKEIVLTGIHVASYGKDFKDG--ISLIDVIENVAKVDGIKRIRLSSM 232

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
            PR ++   ++          + HL +QSGSD +L++MNR++    +++  D IR + P+
Sbjct: 233 EPRHITRDFLERMKATKKACDHFHLSLQSGSDDVLRAMNRKYDTKVFKEKTDLIREIFPN 292

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
             +++D IVGFPGET+ + + TM  V +I +A+   FKYS R GT  + M  QVD NVK 
Sbjct: 293 AGLTTDIIVGFPGETEANHQETMAFVKEIKFAKTHLFKYSKRDGTRAATMKGQVDGNVKK 352

Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIG 448
           ERL  L+   +  +  F +  VG+ + VL E+     G   G S     V + + +    
Sbjct: 353 ERLKDLEAIEKTNREKFLENQVGKTLSVLFEEKSDMAGFKSGYSTNYLRVNVENPSLPTN 412

Query: 449 DIIKVRITDVKISTLYGEL 467
           +I  V+IT +    L GE+
Sbjct: 413 EIYDVKITGLINDELIGEI 431


>gi|224008014|ref|XP_002292966.1| hypothetical protein THAPSDRAFT_263872 [Thalassiosira pseudonana
           CCMP1335]
 gi|220971092|gb|EED89427.1| hypothetical protein THAPSDRAFT_263872 [Thalassiosira pseudonana
           CCMP1335]
          Length = 494

 Score =  222 bits (566), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 152/450 (33%), Positives = 242/450 (53%), Gaps = 51/450 (11%)

Query: 26  RFFVKSYGCQMNVYDS-LRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +F +K+YGCQMNV D+ +    + F +  + +     AD+++ NTC IRE A  KV+  L
Sbjct: 2   KFHIKTYGCQMNVNDTDIVQSSLQFIETTDEIQ----ADILLTNTCAIRENAESKVWHRL 57

Query: 85  GRIRNL-KNSRIKEGGDLLVV-VAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL--- 139
             +R+  +N  +   GD  ++ V GC+A+   E++ +     ++VVGP +Y  LP L   
Sbjct: 58  RELRSHDRNYPLSSVGDERIIGVLGCMAERLKEDMFQDG-TADLVVGPDSYRDLPRLISV 116

Query: 140 LERARFG----KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
           L     G    +R V+   S+++ +  +  +    N    V+AF++I  GC+  C++CVV
Sbjct: 117 LNAPATGTLPTERAVNVQLSLDETYASIKPIRSNPN---DVSAFVSIMRGCNNMCSYCVV 173

Query: 196 PYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAW-------RGKGL------- 240
           P+TRG E SR L  VVDE R+L++  G+ E+ LLGQNVN++       R K L       
Sbjct: 174 PFTRGRERSRGLENVVDETRRLVEEEGIKEVILLGQNVNSYHDIGDRKRKKQLVDDDKSY 233

Query: 241 --------------DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV 286
                         +G+   F DLL ++S +   +R+R+T+ HP+D    L+    +   
Sbjct: 234 QTSNPGFSNMFRLRNGDGHRFLDLLDAVSLLSPELRVRFTSPHPKDYPPPLLTLMAERPN 293

Query: 287 LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDD 346
           +  +LH+P QSGS  +L+ M R +T   Y ++ID +R + PD+AISSDFI GF GET+++
Sbjct: 294 ICSHLHMPAQSGSSSVLERMRRGYTREAYLELIDDVRRLIPDVAISSDFITGFCGETEEE 353

Query: 347 FRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE-QVDENVKAERLLCLQKKLR-EQQVS 404
            + T+ L++++ + QAF F YS R  T     +E  V   VK  RL  +    R E Q  
Sbjct: 354 HQDTLSLMEQVQFDQAFMFAYSMRGKTHAHRSMEDDVLPEVKQRRLNEVITVFRIEVQRR 413

Query: 405 FNDACVGQIIEVLIEKHGKEKGKLVGRSPW 434
            ++  VG++  VL+E  G+ K    G   W
Sbjct: 414 NDEVEVGKLRLVLVE--GEAKRSTPGNRAW 441


>gi|23099419|ref|NP_692885.1| hypothetical protein OB1964 [Oceanobacillus iheyensis HTE831]
 gi|22777648|dbj|BAC13920.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
          Length = 450

 Score =  222 bits (566), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 141/433 (32%), Positives = 238/433 (54%), Gaps = 25/433 (5%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  +  MF  +GYERV+   ++D+ V+NTC +     +K    + R    
Sbjct: 8   TLGCKVNHYETEGIWRMFKEEGYERVDFDHNSDVYVINTCTVTNSGDKKSRQVIRRA--- 64

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               I++  D +V V GC AQ    EI+   P V++VVG Q    +   +E  +  K  V
Sbjct: 65  ----IRKNPDAVVCVTGCYAQTSPGEIME-IPGVDIVVGTQDRKNIFSYIEEHQKTKEPV 119

Query: 151 DTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           +   ++     FE +  V    +R R   A L IQEGC+ FCTFC++P++RG+  SR   
Sbjct: 120 NGVSNIMKNRVFEEMD-VPVFTDRTR---ASLKIQEGCNNFCTFCIIPWSRGLLRSRDPK 175

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
            V+++A KL+  G  E+ L G +     G G D +   F+ LL  L E++GL R+R ++ 
Sbjct: 176 NVIEQATKLVKAGYKELVLTGIHT---AGYGEDMKDYNFAMLLRELEEVEGLERIRISSI 232

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
               ++D +I      + ++ +LH+P+QSGSD +L  M R+++   Y++ +++++   P 
Sbjct: 233 EASQITDEVIDVIDQSNKIVRHLHVPLQSGSDSVLARMRRKYSTSFYKEKVNKLQKALPG 292

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           +AI+SD IVGFPGET+++F+ T   + +IGYA+   F +S R GTP + M  QV++ +K 
Sbjct: 293 LAITSDVIVGFPGETEEEFQQTYSFIKEIGYAELHVFPFSRRTGTPAARMENQVEDPIKE 352

Query: 389 ER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPWLQSVVLNSK 443
           +R   L+ L  +L ++  S  +    +++EV+ E+   E     LVG +     V     
Sbjct: 353 KRVHDLIALSDQLAKEYASRYE---NEVLEVIPEEQVDENQSNTLVGYTDNYMKVQFEGT 409

Query: 444 NHNIGDIIKVRIT 456
              IG I+KV++T
Sbjct: 410 PDLIGKIVKVKVT 422


>gi|78224396|ref|YP_386143.1| hypothetical protein Gmet_3205 [Geobacter metallireducens GS-15]
 gi|123729170|sp|Q39QQ6|RIMO_GEOMG RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|78195651|gb|ABB33418.1| SSU ribosomal protein S12P methylthiotransferase [Geobacter
           metallireducens GS-15]
          Length = 445

 Score =  222 bits (565), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 149/449 (33%), Positives = 229/449 (51%), Gaps = 25/449 (5%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCH-IREKAAEKVYSFLGRIRN 89
           S GC  N+ D+  M        YE      +AD+I++NTC  I +   E + + L     
Sbjct: 9   SLGCPKNLVDAEVMLGCLAKDQYEITTDEHEADIIIVNTCSFIGDAKKESIDTILDLADR 68

Query: 90  LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG--- 146
             + R K     L+VV GC+ Q   EE+    P V++ VG   Y R+ E++   R     
Sbjct: 69  KHDGRCK-----LLVVTGCLPQRYQEELATELPEVDIFVGTADYPRIAEIIAEKRGVAEQ 123

Query: 147 -KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            + + D +Y  ++   RL             TA+L I EGC   C++CV+P  RG   SR
Sbjct: 124 LRYISDPNYIFDESLPRL-------KSSPAYTAYLKIAEGCSNCCSYCVIPSLRGALRSR 176

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            L  ++ EAR L+  G  EI L+ Q++ AW G+ L G   T  +L+  L++I GL  +R 
Sbjct: 177 PLDNLLMEARTLVATGTREINLIAQDITAW-GRDLPGSP-TLEELVRELAKIVGLRWIRL 234

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
             ++P  ++D LI+       +  YL +P+Q  SD +LK MNRR T  + R +I +IR+ 
Sbjct: 235 LYAYPDGITDGLIEIIKTEPKVCKYLDIPIQHISDPVLKRMNRRSTEPQIRALIAKIRAE 294

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P+IA+ +  IVGFPGET++DFR  +  V++  + +   F YS   GTP + M +QV E 
Sbjct: 295 IPEIALRTSLIVGFPGETEEDFRTLLHYVEETQFDRLGVFCYSREEGTPAAGMEDQVSER 354

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-----KGKLVGRSPWLQ-SVV 439
           VK +R   L K         N   +    EV++E +  E     KG+   ++P +   V 
Sbjct: 355 VKRDRYKKLMKVQARLSFKRNRRLIDTEEEVIVEGYSDETDLLLKGRSSRQAPDIDGQVY 414

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
           + + N N+GDI+++RITD     L GE+V
Sbjct: 415 ITAGNANVGDIVRLRITDSSDYDLIGEIV 443


>gi|89895872|ref|YP_519359.1| hypothetical protein DSY3126 [Desulfitobacterium hafniense Y51]
 gi|89335320|dbj|BAE84915.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 441

 Score =  222 bits (565), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 142/396 (35%), Positives = 227/396 (57%), Gaps = 16/396 (4%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N  +S  +  +F + GY  V+S + AD++V+NTC +      K    + R+   
Sbjct: 18  TLGCKVNQTESEALGQLFRNNGYHVVSSTEKADVVVVNTCTVTNTGGAKSRQTIRRM--- 74

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               +K   D  VVV GC AQ    EIL  +  V++V+G Q   ++ EL+++ +  ++  
Sbjct: 75  ----VKAHPDAFVVVMGCYAQTAPGEILGIAG-VDLVLGTQDRGKILELIDQVKKEQQPK 129

Query: 151 DTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
            +  ++ D   FE L +++   +R R   A L IQEGC++FCT+C++PY RG   SR   
Sbjct: 130 SSVRTIWDAKTFEELPLIEE-ESRTR---ATLKIQEGCNQFCTYCIIPYARGPVRSRIPE 185

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
             V EA KL+  G  EI L G +  ++ G+ L GE    + L+ +L++IKGL RLR ++ 
Sbjct: 186 NAVTEAEKLVAAGYKEIVLTGIHTGSY-GEDL-GEDWDLARLVKALAQIKGLHRLRLSSI 243

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
            P + +  LI    +   + P+LH+P+Q GSD IL  M R +T  E++++I R+ S++P 
Sbjct: 244 EPMEFTPELIDVIINYPAVCPHLHIPLQCGSDAILTRMKRPYTVKEFKELIQRLTSLQPG 303

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           IAI++D IVGFPGET+ +F+ T++ V   G++    F YS R GTP +   EQ+   +K 
Sbjct: 304 IAITTDVIVGFPGETEQNFQETLETVRSCGFSGIHVFPYSKREGTPAAKYPEQIPNKIKE 363

Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE 424
           ER+  L +  RE Q  +    +GQ +EVLIE+   E
Sbjct: 364 ERVKALLEVARESQEDYVRRFIGQRVEVLIERVSPE 399


>gi|218905447|ref|YP_002453281.1| RNA modification enzyme, MiaB family [Bacillus cereus AH820]
 gi|218535522|gb|ACK87920.1| RNA modification enzyme, MiaB family [Bacillus cereus AH820]
          Length = 450

 Score =  222 bits (565), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 138/432 (31%), Positives = 236/432 (54%), Gaps = 21/432 (4%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  +  +F   GYER      AD+ V+NTC +     +K    + R    
Sbjct: 8   TLGCKVNHYETEAIWQLFKQGGYERTEYEKKADVYVINTCTVTNTGDKKSRQVIRRA--- 64

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               +++  D ++ V GC AQ    EI+   P V++VVG Q   ++   +E  R  ++ +
Sbjct: 65  ----VRQNPDAVICVTGCYAQTSPAEIMA-IPGVDIVVGTQDREKMLGYIEEFRXERQPI 119

Query: 151 DTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           +   ++     +E L   D  Y   R   A L IQEGC+ FCTFC++P+ RG+  SR   
Sbjct: 120 NAVRNIMKTRVYEEL---DVPYFTDR-TRASLKIQEGCNNFCTFCIIPWARGLMRSRDGK 175

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKGLVRLRYTT 267
           +V+ +A++L+D G  EI L G +     G G D +    + LL  + +E+ GL RLR ++
Sbjct: 176 EVIKQAQQLVDAGYKEIVLTGIHTG---GYGEDIKDYNLAGLLRDMEAEVGGLKRLRISS 232

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
                +SD +I+     +V++ +LH+P+QSGS+ +LK M R++T   +++ +DR++   P
Sbjct: 233 IEASQISDEVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALP 292

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
            +AI+SD IVGFPGET+++F  T + + +  +++   F YS R GTP + M +QV E+VK
Sbjct: 293 GLAITSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVK 352

Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIE---KHGKEKGKLVGRSPWLQSVVLNSKN 444
            +R+  L +   +    +     G+++E++ E   K G  +G  VG +     +V     
Sbjct: 353 NDRVHRLIELSNQLAKEYASQFEGEVLEIIPEEQFKEGDREGLYVGYTDNYLKIVFEGSE 412

Query: 445 HNIGDIIKVRIT 456
             IG ++KV+IT
Sbjct: 413 ELIGKLVKVKIT 424


>gi|220932113|ref|YP_002509021.1| MiaB-like tRNA modifying enzyme [Halothermothrix orenii H 168]
 gi|219993423|gb|ACL70026.1| MiaB-like tRNA modifying enzyme [Halothermothrix orenii H 168]
          Length = 438

 Score =  222 bits (565), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 139/434 (32%), Positives = 244/434 (56%), Gaps = 28/434 (6%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  M  +F   GY+ V+  D AD+ ++N+C +  +AA K        R L
Sbjct: 9   TLGCKVNHYETEAMMGIFEEAGYKVVDFDDRADVYIINSCTVTNEAARKS-------RQL 61

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG-KRV 149
                ++  + +V + GC AQ   +E+ ++   +++V+G      + +L+E  R G K V
Sbjct: 62  ARKARRKNPEAVVALVGCYAQVSPDEV-KKIDAIDLVLGSDRRKDIVKLVEEVRTGGKEV 120

Query: 150 VDT-DYSVEDKFERLSIVDGGYNRKRGVT-AFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
            D  D+     +E L+I     N+ +  T A++ I+EGC++FC++C++PY RG   SR  
Sbjct: 121 TDVKDFKKLTTYEDLNI-----NKVKETTRAYIKIEEGCNQFCSYCIIPYARGPVRSRKE 175

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYT 266
             V+ E  +L+  GV EI L G ++ A+   GLD        +L+ +L ++KGL R+R +
Sbjct: 176 ESVIQEVERLVRAGVKEIVLTGTHLGAY---GLDENNDKALVELIQNLVKVKGLARIRLS 232

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
           +    +++D LI+  G  D + P+LHLP+QSGS+ ILK M R +T  E+++ +D+IR + 
Sbjct: 233 SLEVTEVNDDLIRIMGSEDKVCPHLHLPLQSGSNTILKKMKRPYTVEEFKETVDKIRKII 292

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
            DIAI++D IVGFPGE   +F  + + V ++G+++   F +S R GTP + M  QV  +V
Sbjct: 293 EDIAITTDIIVGFPGEGQKEFNESYNTVKELGFSRLHVFPFSIRQGTPAARMKNQVPGDV 352

Query: 387 KAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG--RSPWLQSVVLN 441
           K E   ++  L KKL    + +     G + +V+IE +   +  L+      +++ ++ N
Sbjct: 353 KKEYSKKMRELNKKL---MLEYQKRFWGHLRDVIIEDNRDSRTNLLTGVTGNYIKVMIEN 409

Query: 442 SKNHNIGDIIKVRI 455
           + +   G + KVR+
Sbjct: 410 ADDSLRGKMCKVRL 423


>gi|42783437|ref|NP_980684.1| hypothetical protein BCE_4391 [Bacillus cereus ATCC 10987]
 gi|206978420|ref|ZP_03239289.1| RNA modification enzyme, MiaB family [Bacillus cereus H3081.97]
 gi|217961800|ref|YP_002340370.1| RNA modification enzyme, MiaB family [Bacillus cereus AH187]
 gi|222097755|ref|YP_002531812.1| fe-s oxidoreductase [Bacillus cereus Q1]
 gi|229141048|ref|ZP_04269590.1| hypothetical protein bcere0013_41420 [Bacillus cereus BDRD-ST26]
 gi|229198438|ref|ZP_04325142.1| hypothetical protein bcere0001_39660 [Bacillus cereus m1293]
 gi|42739366|gb|AAS43292.1| conserved hypothetical protein [Bacillus cereus ATCC 10987]
 gi|206743376|gb|EDZ54814.1| RNA modification enzyme, MiaB family [Bacillus cereus H3081.97]
 gi|217065337|gb|ACJ79587.1| RNA modification enzyme, MiaB family [Bacillus cereus AH187]
 gi|221241813|gb|ACM14523.1| Fe-S oxidoreductase [Bacillus cereus Q1]
 gi|228584941|gb|EEK43055.1| hypothetical protein bcere0001_39660 [Bacillus cereus m1293]
 gi|228642326|gb|EEK98615.1| hypothetical protein bcere0013_41420 [Bacillus cereus BDRD-ST26]
 gi|324328214|gb|ADY23474.1| Fe-S oxidoreductase [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 450

 Score =  222 bits (565), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 138/432 (31%), Positives = 236/432 (54%), Gaps = 21/432 (4%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  +  +F   GYER      AD+ V+NTC +     +K    + R    
Sbjct: 8   TLGCKVNHYETEAIWQLFKQGGYERTEYEKKADVYVINTCTVTNTGDKKSRQVIRRA--- 64

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               +++  D ++ V GC AQ    EI+   P V++VVG Q   ++   +E  R  ++ +
Sbjct: 65  ----VRQNPDAVICVTGCYAQTSPAEIMA-IPGVDIVVGTQDREKMLGYIEEFRKERQPI 119

Query: 151 DTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           +   ++     +E L   D  Y   R   A L IQEGC+ FCTFC++P+ RG+  SR   
Sbjct: 120 NAVRNIMKTRVYEEL---DVPYFTDR-TRASLKIQEGCNNFCTFCIIPWARGLMRSRDGK 175

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKGLVRLRYTT 267
           +V+ +A++L+D G  EI L G +     G G D +    + LL  + +E+ GL RLR ++
Sbjct: 176 EVIKQAQQLVDAGYKEIVLTGIHTG---GYGEDIKDYNLAGLLRDMEAEVDGLKRLRISS 232

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
                +SD +I+     +V++ +LH+P+QSGS+ +LK M R++T   +++ +DR++   P
Sbjct: 233 IEASQISDEVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALP 292

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
            +AI+SD IVGFPGET+++F  T + + +  +++   F YS R GTP + M +QV E+VK
Sbjct: 293 GLAITSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVK 352

Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIE---KHGKEKGKLVGRSPWLQSVVLNSKN 444
            +R+  L +   +    +     G+++E++ E   K G  +G  VG +     +V     
Sbjct: 353 NDRVHRLIELSNQLAKEYASQFEGEVLEIIPEEQFKEGDREGLYVGYTDNYLKIVFEGSE 412

Query: 445 HNIGDIIKVRIT 456
             IG ++KV+IT
Sbjct: 413 ELIGKLVKVKIT 424


>gi|228923063|ref|ZP_04086355.1| hypothetical protein bthur0011_40430 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228836561|gb|EEM81910.1| hypothetical protein bthur0011_40430 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 450

 Score =  222 bits (565), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 138/432 (31%), Positives = 236/432 (54%), Gaps = 21/432 (4%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  +  +F   GYER      AD+ V+NTC +     +K    + R    
Sbjct: 8   TLGCKVNHYETEAIWQLFKQGGYERTEYEKKADVYVINTCTVTNTGDKKSRQVIRRA--- 64

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               +++  D ++ V GC AQ    EI+   P V++VVG Q   ++   +E  R  ++ +
Sbjct: 65  ----VRQNPDAVICVTGCYAQTSPAEIMA-IPGVDIVVGTQDREKMLGYIEEFRKERQPI 119

Query: 151 DTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           +   ++     +E L   D  Y   R   A L IQEGC+ FCTFC++P+ RG+  SR   
Sbjct: 120 NAVRNIMKTRVYEEL---DVPYFTDR-TRASLKIQEGCNNFCTFCIIPWARGLMRSRDGK 175

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKGLVRLRYTT 267
           +V+ +A++L+D G  EI L G +     G G D +    + LL  + +E+ GL RLR ++
Sbjct: 176 EVIKQAQQLVDAGYKEIVLTGIHTG---GYGEDIKDYNLAGLLRDMEAEVGGLKRLRISS 232

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
                +SD +I+     +V++ +LH+P+QSGS+ +LK M R++T   +++ +DR++   P
Sbjct: 233 IEASQISDEVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALP 292

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
            +AI+SD IVGFPGET+++F  T + + +  +++   F YS R GTP + M +QV E+VK
Sbjct: 293 GLAITSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVK 352

Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIE---KHGKEKGKLVGRSPWLQSVVLNSKN 444
            +R+  L +   +    +     G+++E++ E   K G  +G  VG +     +V     
Sbjct: 353 NDRVHRLIELSNQLAKEYASGFEGEVLEIIPEEQFKEGDREGLYVGYTDNYLKIVFEGSE 412

Query: 445 HNIGDIIKVRIT 456
             IG ++KV+IT
Sbjct: 413 ELIGKLVKVKIT 424


>gi|219670301|ref|YP_002460736.1| RNA modification enzyme, MiaB family [Desulfitobacterium hafniense
           DCB-2]
 gi|219540561|gb|ACL22300.1| RNA modification enzyme, MiaB family [Desulfitobacterium hafniense
           DCB-2]
          Length = 439

 Score =  222 bits (565), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 142/396 (35%), Positives = 227/396 (57%), Gaps = 16/396 (4%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N  +S  +  +F + GY  V+S + AD++V+NTC +      K    + R+   
Sbjct: 16  TLGCKVNQTESEALGQLFRNNGYHVVSSTEKADVVVVNTCTVTNTGGAKSRQTIRRM--- 72

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               +K   D  VVV GC AQ    EIL  +  V++V+G Q   ++ EL+++ +  ++  
Sbjct: 73  ----VKAHPDAFVVVMGCYAQTAPGEILGIAG-VDLVLGTQDRGKILELIDQVKKEQQPK 127

Query: 151 DTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
            +  ++ D   FE L +++   +R R   A L IQEGC++FCT+C++PY RG   SR   
Sbjct: 128 SSVRTIWDAKTFEELPLIEE-ESRTR---ATLKIQEGCNQFCTYCIIPYARGPVRSRIPE 183

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
             V EA KL+  G  EI L G +  ++ G+ L GE    + L+ +L++IKGL RLR ++ 
Sbjct: 184 NAVTEAEKLVAAGYKEIVLTGIHTGSY-GEDL-GEDWDLARLVKALAQIKGLHRLRLSSI 241

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
            P + +  LI    +   + P+LH+P+Q GSD IL  M R +T  E++++I R+ S++P 
Sbjct: 242 EPMEFTPELIDVIINYPAVCPHLHIPLQCGSDAILTRMKRPYTVKEFKELIQRLTSLQPG 301

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           IAI++D IVGFPGET+ +F+ T++ V   G++    F YS R GTP +   EQ+   +K 
Sbjct: 302 IAITTDVIVGFPGETEQNFQETLETVRSCGFSGIHVFPYSKREGTPAAKYPEQIPNKIKE 361

Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE 424
           ER+  L +  RE Q  +    +GQ +EVLIE+   E
Sbjct: 362 ERVKALLEVARESQEDYVRRFIGQRVEVLIERVSPE 397


>gi|172056823|ref|YP_001813283.1| RNA modification protein [Exiguobacterium sibiricum 255-15]
 gi|171989344|gb|ACB60266.1| RNA modification enzyme, MiaB family [Exiguobacterium sibiricum
           255-15]
          Length = 444

 Score =  222 bits (565), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 146/445 (32%), Positives = 247/445 (55%), Gaps = 24/445 (5%)

Query: 30  KSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRN 89
           ++ GC++N Y++  +  +F   GY RV+  D AD+ V+NTC +     +K    + R   
Sbjct: 7   QTLGCKVNHYETEAVWQLFKDAGYGRVDFADHADVYVVNTCTVTNTGDKKSRQVIRRA-- 64

Query: 90  LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149
                I++  D ++ V GC AQ    EI+   P V+VVVG Q  +++   +E+ R  +  
Sbjct: 65  -----IRQNPDSVICVTGCYAQTSPAEIMA-IPGVDVVVGTQDRHKMIGYIEQFREERMP 118

Query: 150 VDTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
           ++   ++     +E L  V    +R R   A L IQEGC+ FCTFC++P+ RG+  SR  
Sbjct: 119 INAVGNIMKAKVYEELD-VPAFTDRTR---ASLKIQEGCNNFCTFCIIPWARGLMRSRQP 174

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
             V+ +A++L+D G  EI L G +     G G D +    + LL +L  + GL RLR ++
Sbjct: 175 EDVLKQAQQLVDAGYKEIVLTGIHTG---GYGEDLKDYNLAKLLKALESVTGLERLRISS 231

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
                ++D ++    D  +++ +LH+P+QSGSD +L+ M R++T  E+ + I R++ V P
Sbjct: 232 IEASQITDEVLDVLKDSPIVVRHLHVPIQSGSDTVLRRMRRKYTMAEFGKRITRLKEVLP 291

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
           D AI+SD IVGFPGET+++F  T + ++   +++   F YS R GTP + M +QVDE VK
Sbjct: 292 DCAITSDVIVGFPGETEEEFMETFNFINDHKFSELHVFPYSKRTGTPAAMMDDQVDEQVK 351

Query: 388 AE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNSK 443
            +   RL+ L  +L ++  S  +   G+++E++ E+  +E  G+LVG +     V +   
Sbjct: 352 EQRVARLIALSDQLAKEYASKYE---GELLEIIPEEFSEEAGGRLVGYTDNYLRVAIEGD 408

Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468
              IG +++V+I+        G+ V
Sbjct: 409 ESLIGQLVRVKISKAGYPMNDGQFV 433


>gi|228916942|ref|ZP_04080503.1| hypothetical protein bthur0012_41550 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|301055802|ref|YP_003794013.1| hypothetical protein BACI_c42790 [Bacillus anthracis CI]
 gi|228842663|gb|EEM87750.1| hypothetical protein bthur0012_41550 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|300377971|gb|ADK06875.1| conserved hypothetical protein [Bacillus cereus biovar anthracis
           str. CI]
          Length = 450

 Score =  222 bits (565), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 138/432 (31%), Positives = 236/432 (54%), Gaps = 21/432 (4%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  +  +F   GYER      AD+ V+NTC +     +K    + R    
Sbjct: 8   TLGCKVNHYETEAIWQLFKQGGYERTEYEKKADVYVINTCTVTNTGDKKSRQVIRRA--- 64

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               +++  D ++ V GC AQ    EI+   P V++VVG Q   ++   +E  R  ++ +
Sbjct: 65  ----VRQNPDAVICVTGCYAQTSPAEIMA-IPGVDIVVGTQDREKMLGYIEEFRKERQPI 119

Query: 151 DTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           +   ++     +E L   D  Y   R   A L IQEGC+ FCTFC++P+ RG+  SR   
Sbjct: 120 NAVRNIMKTRVYEEL---DVPYFTDR-TRASLKIQEGCNNFCTFCIIPWARGLMRSRDGK 175

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKGLVRLRYTT 267
           +V+ +A++L+D G  EI L G +     G G D +    + LL  + +E+ GL RLR ++
Sbjct: 176 EVIKQAQQLVDAGYKEIVLTGIHTG---GYGEDIKDYNLAGLLRDMETEVGGLKRLRISS 232

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
                +SD +I+     +V++ +LH+P+QSGS+ +LK M R++T   +++ +DR++   P
Sbjct: 233 IEASQISDEVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALP 292

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
            +AI+SD IVGFPGET+++F  T + + +  +++   F YS R GTP + M +QV E+VK
Sbjct: 293 GLAITSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVK 352

Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIE---KHGKEKGKLVGRSPWLQSVVLNSKN 444
            +R+  L +   +    +     G+++E++ E   K G  +G  VG +     +V     
Sbjct: 353 NDRVHRLIELSNQLAKEYASQFEGEVLEIIPEEQFKEGDREGLYVGYTDNYLKIVFEGSE 412

Query: 445 HNIGDIIKVRIT 456
             IG ++KV+IT
Sbjct: 413 ELIGKLVKVKIT 424


>gi|47567875|ref|ZP_00238583.1| MiaB-like tRNA modifying enzyme [Bacillus cereus G9241]
 gi|49478605|ref|YP_038365.1| hypothetical protein BT9727_4047 [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|52141194|ref|YP_085636.1| hypothetical protein BCZK4057 [Bacillus cereus E33L]
 gi|167634590|ref|ZP_02392910.1| conserved hypothetical protein [Bacillus anthracis str. A0442]
 gi|170687423|ref|ZP_02878640.1| conserved hypothetical protein [Bacillus anthracis str. A0465]
 gi|196034518|ref|ZP_03101927.1| RNA modification enzyme, MiaB family [Bacillus cereus W]
 gi|196039288|ref|ZP_03106594.1| RNA modification enzyme, MiaB family [Bacillus cereus NVH0597-99]
 gi|225866291|ref|YP_002751669.1| RNA modification enzyme, MiaB family [Bacillus cereus 03BB102]
 gi|228929354|ref|ZP_04092378.1| hypothetical protein bthur0010_40400 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228935630|ref|ZP_04098444.1| hypothetical protein bthur0009_40760 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228948023|ref|ZP_04110308.1| hypothetical protein bthur0007_41500 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228987561|ref|ZP_04147679.1| hypothetical protein bthur0001_42320 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|229031959|ref|ZP_04187945.1| hypothetical protein bcere0028_40050 [Bacillus cereus AH1271]
 gi|229123849|ref|ZP_04253042.1| hypothetical protein bcere0016_41350 [Bacillus cereus 95/8201]
 gi|229157924|ref|ZP_04285997.1| hypothetical protein bcere0010_41050 [Bacillus cereus ATCC 4342]
 gi|254684067|ref|ZP_05147927.1| RNA modification enzyme, MiaB family protein [Bacillus anthracis
           str. CNEVA-9066]
 gi|254721901|ref|ZP_05183690.1| RNA modification enzyme, MiaB family protein [Bacillus anthracis
           str. A1055]
 gi|254741453|ref|ZP_05199140.1| RNA modification enzyme, MiaB family protein [Bacillus anthracis
           str. Kruger B]
 gi|300118700|ref|ZP_07056428.1| RNA modification enzyme, MiaB family protein [Bacillus cereus SJ1]
 gi|47555552|gb|EAL13895.1| MiaB-like tRNA modifying enzyme [Bacillus cereus G9241]
 gi|49330161|gb|AAT60807.1| conserved hypothetical protein [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|51974663|gb|AAU16213.1| conserved hypothetical protein [Bacillus cereus E33L]
 gi|167530042|gb|EDR92777.1| conserved hypothetical protein [Bacillus anthracis str. A0442]
 gi|170668618|gb|EDT19364.1| conserved hypothetical protein [Bacillus anthracis str. A0465]
 gi|195993060|gb|EDX57019.1| RNA modification enzyme, MiaB family [Bacillus cereus W]
 gi|196029915|gb|EDX68516.1| RNA modification enzyme, MiaB family [Bacillus cereus NVH0597-99]
 gi|225790885|gb|ACO31102.1| RNA modification enzyme, MiaB family [Bacillus cereus 03BB102]
 gi|228625532|gb|EEK82286.1| hypothetical protein bcere0010_41050 [Bacillus cereus ATCC 4342]
 gi|228659563|gb|EEL15210.1| hypothetical protein bcere0016_41350 [Bacillus cereus 95/8201]
 gi|228729349|gb|EEL80340.1| hypothetical protein bcere0028_40050 [Bacillus cereus AH1271]
 gi|228772159|gb|EEM20607.1| hypothetical protein bthur0001_42320 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|228811609|gb|EEM57945.1| hypothetical protein bthur0007_41500 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228823990|gb|EEM69808.1| hypothetical protein bthur0009_40760 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228830305|gb|EEM75918.1| hypothetical protein bthur0010_40400 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|298723949|gb|EFI64663.1| RNA modification enzyme, MiaB family protein [Bacillus cereus SJ1]
          Length = 450

 Score =  221 bits (564), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 138/432 (31%), Positives = 236/432 (54%), Gaps = 21/432 (4%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  +  +F   GYER      AD+ V+NTC +     +K    + R    
Sbjct: 8   TLGCKVNHYETEAIWQLFKQGGYERTEYEKKADVYVINTCTVTNTGDKKSRQVIRRA--- 64

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               +++  D ++ V GC AQ    EI+   P V++VVG Q   ++   +E  R  ++ +
Sbjct: 65  ----VRQNPDAVICVTGCYAQTSPAEIMA-IPGVDIVVGTQDREKMLGYIEEFRKERQPI 119

Query: 151 DTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           +   ++     +E L   D  Y   R   A L IQEGC+ FCTFC++P+ RG+  SR   
Sbjct: 120 NAVRNIMKTRVYEEL---DVPYFTDR-TRASLKIQEGCNNFCTFCIIPWARGLMRSRDGK 175

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKGLVRLRYTT 267
           +V+ +A++L+D G  EI L G +     G G D +    + LL  + +E+ GL RLR ++
Sbjct: 176 EVIKQAQQLVDAGYKEIVLTGIHTG---GYGEDIKDYNLAGLLRDMEAEVGGLKRLRISS 232

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
                +SD +I+     +V++ +LH+P+QSGS+ +LK M R++T   +++ +DR++   P
Sbjct: 233 IEASQISDEVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALP 292

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
            +AI+SD IVGFPGET+++F  T + + +  +++   F YS R GTP + M +QV E+VK
Sbjct: 293 GLAITSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVK 352

Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIE---KHGKEKGKLVGRSPWLQSVVLNSKN 444
            +R+  L +   +    +     G+++E++ E   K G  +G  VG +     +V     
Sbjct: 353 NDRVHRLIELSNQLAKEYASQFEGEVLEIIPEEQFKEGDREGLYVGYTDNYLKIVFEGSE 412

Query: 445 HNIGDIIKVRIT 456
             IG ++KV+IT
Sbjct: 413 ELIGKLVKVKIT 424


>gi|307266431|ref|ZP_07547967.1| MiaB-like tRNA modifying enzyme [Thermoanaerobacter wiegelii
           Rt8.B1]
 gi|306918539|gb|EFN48777.1| MiaB-like tRNA modifying enzyme [Thermoanaerobacter wiegelii
           Rt8.B1]
          Length = 455

 Score =  221 bits (564), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 140/448 (31%), Positives = 240/448 (53%), Gaps = 37/448 (8%)

Query: 33  GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92
           GC++N Y++  M ++F   GYE V+  + AD+ V+NTC +  ++  K    + + R    
Sbjct: 29  GCKVNQYETEVMAELFKKAGYEVVDFNEKADVYVINTCTVTNRSDMKSRQEIRKAR---- 84

Query: 93  SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDT 152
              K+  D LVV AGC  Q   EE     P V++ +G +   ++ EL+E           
Sbjct: 85  ---KKNPDALVVAAGCYVQVSPEEAFS-LPEVDIAIGTKNKDKIVELVE----------- 129

Query: 153 DYSVEDKFERLSIVDGGYNRKR----GVTAF-------LTIQEGCDKFCTFCVVPYTRGI 201
                 K ++LS+V+    +K     GVTA+       + IQ+GC+++CT+C++PY RG 
Sbjct: 130 --EFTQKNQKLSVVNNIMTQKEYEEFGVTAYTERTRAYIKIQDGCNQYCTYCIIPYARGP 187

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
             SR   +V+DE ++  D+G  EI L G ++ ++   G D +     D++  + EI G+ 
Sbjct: 188 VRSRDPKKVLDEVKRFADSGYKEIVLTGIHIASY---GKDLKNIGLLDIIKMIHEIDGIK 244

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R ++  P  +++  +K   +L  +  + H+ +QSG D  LK M RR+T  EY+ +IDR
Sbjct: 245 RIRLSSIEPTFLTEEFVKEIANLPKMCRHYHVSLQSGCDETLKRMGRRYTTKEYKSVIDR 304

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R    D+AI++D +VGFPGET ++F  T   V++I +++   FKYS R GT   N   Q
Sbjct: 305 LREYIKDVAITTDVMVGFPGETGEEFLKTYKFVEEICFSKMHVFKYSRRKGTRAYNFPNQ 364

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRSPWLQSVVL 440
           V  ++K +R   L +     +  F ++ +G+ +EVL E+  K  +G + G +    SV +
Sbjct: 365 VANHIKEDRSKKLIELSNRCEYKFMESFIGKTLEVLFEQPVKNMEGYVEGLTDNYLSVAV 424

Query: 441 NSKNHNI-GDIIKVRITDVKISTLYGEL 467
                 +  +I  V+I ++K + L GE+
Sbjct: 425 KGDRKLLRNEIFTVKIKEIKDNLLIGEI 452


>gi|229093380|ref|ZP_04224485.1| hypothetical protein bcere0021_41060 [Bacillus cereus Rock3-42]
 gi|228689974|gb|EEL43777.1| hypothetical protein bcere0021_41060 [Bacillus cereus Rock3-42]
          Length = 478

 Score =  221 bits (564), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 138/432 (31%), Positives = 236/432 (54%), Gaps = 21/432 (4%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  +  +F   GYER      AD+ V+NTC +     +K    + R    
Sbjct: 8   TLGCKVNHYETEAIWQLFKQGGYERTEYEKKADVYVINTCTVTNTGDKKSRQVIRRA--- 64

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               +++  D ++ V GC AQ    EI+   P V++VVG Q   ++   +E  R  ++ +
Sbjct: 65  ----VRQNPDAVICVTGCYAQTSPAEIMA-IPGVDIVVGTQDREKMLGYIEEFRKERQPI 119

Query: 151 DTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           +   ++     +E L   D  Y   R   A L IQEGC+ FCTFC++P+ RG+  SR   
Sbjct: 120 NAVRNIMKTRVYEEL---DVPYFTDR-TRASLKIQEGCNNFCTFCIIPWARGLMRSRDGK 175

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKGLVRLRYTT 267
           +V+ +A++L+D G  EI L G +     G G D +    + LL  + +E+ GL RLR ++
Sbjct: 176 EVIKQAQQLVDAGYKEIVLTGIHTG---GYGEDIKDYNLAGLLRDMEAEVGGLKRLRISS 232

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
                +SD +I+     +V++ +LH+P+QSGS+ +LK M R++T   +++ +DR++   P
Sbjct: 233 IEASQISDEVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALP 292

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
            +AI+SD IVGFPGET+++F  T + + +  +++   F YS R GTP + M +QV E+VK
Sbjct: 293 GLAITSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVK 352

Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIE---KHGKEKGKLVGRSPWLQSVVLNSKN 444
            +R+  L +   +    +     G+++E++ E   K G  +G  VG +     +V     
Sbjct: 353 NDRVHRLIELSNQLAKEYASQFEGEVLEIIPEEQFKEGDREGLYVGYTDNYLKIVFEGSE 412

Query: 445 HNIGDIIKVRIT 456
             IG ++KV+IT
Sbjct: 413 ELIGKLVKVKIT 424


>gi|226312987|ref|YP_002772881.1| hypothetical protein BBR47_34000 [Brevibacillus brevis NBRC 100599]
 gi|226095935|dbj|BAH44377.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599]
          Length = 448

 Score =  221 bits (564), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 146/453 (32%), Positives = 238/453 (52%), Gaps = 22/453 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++  + + GC+ N+ DS  M  +   +GYE V++ ++A ++++NTC   + A E+  +  
Sbjct: 9   EKVAIVTLGCEKNLVDSDMMAHLIDEKGYELVDNPEEATVVIVNTCGFIDAAKEESVN-- 66

Query: 85  GRIRNLKNSRIKEGGDL-LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
              + L+   +KE G L  +VVAGC+ Q   E+IL   P V+ +VG   +  +  ++E +
Sbjct: 67  ---KILEMGELKESGKLKSLVVAGCLTQRYKEDILNEIPEVDGIVGTGDFMSITGIIEES 123

Query: 144 RFGKR---VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
             GKR   V +  ++ ED  +R  +  G Y      TA++ I EGCD  CTFC +P  RG
Sbjct: 124 LEGKRPIFVGNPIFTYEDVVKR-KVKQGTY------TAYIKIAEGCDNACTFCSIPLMRG 176

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
              SR++  +V+EAR L   GV E++L+ Q+   +     DG K    +LL  L+E++G+
Sbjct: 177 GFRSRTIESIVEEARHLAAQGVVEVSLIAQDSTNYGTDIYDG-KLMLPELLNRLAEVEGI 235

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
             +R   ++P   +D LI        +  Y+ +P+Q   D ILK M R     + R ++ 
Sbjct: 236 EWIRLHYAYPGFFTDELIHTFATNPKVCKYVDMPLQHSEDHILKRMRRPGRQTDIRALVA 295

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           +IR+  PD+A+ +  IVGFPGET++DF    + V  I + +   F YS    TP S + +
Sbjct: 296 KIRAQVPDVALRTSLIVGFPGETEEDFERLSEFVKDIRFDRLGVFTYSNEDDTPASRLPD 355

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQ---- 436
            VDE VK +R   L +  RE     N   VGQ+++VLIE++       VGR+ +      
Sbjct: 356 HVDEEVKEKRANMLMEIQREVAGDRNGRFVGQVLDVLIERYEGRNDIYVGRTQYDAPEID 415

Query: 437 -SVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
             V +      +G ++KV+IT      L GE+V
Sbjct: 416 GEVFVTGFKGELGTVVKVKITHSYEYDLAGEVV 448


>gi|118479478|ref|YP_896629.1| 2-methylthioadenine synthetase [Bacillus thuringiensis str. Al
           Hakam]
 gi|229186550|ref|ZP_04313711.1| hypothetical protein bcere0004_40930 [Bacillus cereus BGSC 6E1]
 gi|118418703|gb|ABK87122.1| conserved hypothetical protein [Bacillus thuringiensis str. Al
           Hakam]
 gi|228596809|gb|EEK54468.1| hypothetical protein bcere0004_40930 [Bacillus cereus BGSC 6E1]
          Length = 450

 Score =  221 bits (564), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 138/432 (31%), Positives = 236/432 (54%), Gaps = 21/432 (4%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  +  +F   GYER      AD+ V+NTC +     +K    + R    
Sbjct: 8   TLGCKVNHYETEAIWQLFKQGGYERTEYEKKADVYVINTCTVTNTGDKKSRQVIRRA--- 64

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               +++  D ++ V GC AQ    EI+   P V++VVG Q   ++   +E  R  ++ +
Sbjct: 65  ----VRQNPDAVICVTGCYAQTSPAEIMA-IPGVDIVVGTQDREKMLGYIEEFRKERQPI 119

Query: 151 DTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           +   ++     +E L   D  Y   R   A L IQEGC+ FCTFC++P+ RG+  SR   
Sbjct: 120 NAVRNIMKTRVYEEL---DVPYFTDR-TRASLKIQEGCNNFCTFCIIPWARGLMRSRDGK 175

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKGLVRLRYTT 267
           +V+ +A++L+D G  EI L G +     G G D +    + LL  + +E+ GL RLR ++
Sbjct: 176 EVIKQAQQLVDAGYKEIVLTGIHTG---GYGEDIKDYNLAGLLRDMEAEVGGLKRLRISS 232

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
                +SD +I+     +V++ +LH+P+QSGS+ +LK M R++T   +++ +DR++   P
Sbjct: 233 IEASQISDEVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALP 292

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
            +AI+SD IVGFPGET+++F  T + + +  +++   F YS R GTP + M +QV E+VK
Sbjct: 293 GLAITSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVK 352

Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIE---KHGKEKGKLVGRSPWLQSVVLNSKN 444
            +R+  L +   +    +     G+++E++ E   K G  +G  VG +     +V     
Sbjct: 353 NDRVHRLIELSNQLAKEYASQFEGEVLEIIPEEQFKEGDREGLYVGYTDNYLKIVFEGSE 412

Query: 445 HNIGDIIKVRIT 456
             IG ++KV+IT
Sbjct: 413 ELIGKLVKVKIT 424


>gi|311069144|ref|YP_003974067.1| YqeV protein [Bacillus atrophaeus 1942]
 gi|310869661|gb|ADP33136.1| YqeV [Bacillus atrophaeus 1942]
          Length = 451

 Score =  221 bits (564), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 144/447 (32%), Positives = 241/447 (53%), Gaps = 27/447 (6%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  +  +F   GYER      AD+ V+NTC +     +K    + R    
Sbjct: 8   TLGCKVNHYETEAIWQLFKEAGYERKEFEQAADVYVINTCTVTNTGDKKSRQVIRRA--- 64

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               I+   D ++ V GC AQ    EI+   P V++VVG Q   ++   +E+ R  ++ +
Sbjct: 65  ----IRHNPDGVICVTGCYAQTSPAEIMA-IPGVDIVVGTQDREKMLGYIEQYRQERQPI 119

Query: 151 DTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           +   ++     FE L  V    +R R   A L IQEGC+ FCTFC++P+ RG+  SR   
Sbjct: 120 NGVGNIMKARVFEELD-VPAFTDRTR---ASLKIQEGCNNFCTFCIIPWARGLLRSRDPE 175

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKGLVRLRYTT 267
           +V+ +A++L+D G  EI L G +     G G D +   F+ LL  L + + GL R+R ++
Sbjct: 176 EVIKQAQQLVDAGYKEIVLTGIHTG---GYGEDMKDYNFAKLLRELDARVDGLKRIRISS 232

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
                ++D +I+     D ++ +LH+P+QSGS+ +LK M R++T   +   +++++   P
Sbjct: 233 IEASQITDEVIEVLDRSDKIVRHLHIPIQSGSNTVLKRMRRKYTMEFFADRLNKLKKALP 292

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
            +A++SD IVGFPGET+++F  T D + +  +++   F YS R GTP + M +QVDENVK
Sbjct: 293 GLAVTSDVIVGFPGETEEEFMETYDFIKENRFSELHVFPYSKRTGTPAARMEDQVDENVK 352

Query: 388 AER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK---LVGRSPWLQSVVLN 441
            ER   L+ L  +L ++  S  +   G+++E++ E+  KE  +    VG +     VV  
Sbjct: 353 NERVHQLIALSDQLAKEYASDYE---GEVLEIIPEEAFKETNESNLFVGYTDNYMKVVFK 409

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                IG ++KV+I         G+ V
Sbjct: 410 GTEDLIGKLVKVKIEKAGYPYNEGQFV 436


>gi|229163255|ref|ZP_04291210.1| hypothetical protein bcere0009_40230 [Bacillus cereus R309803]
 gi|228620318|gb|EEK77189.1| hypothetical protein bcere0009_40230 [Bacillus cereus R309803]
          Length = 454

 Score =  221 bits (564), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 143/436 (32%), Positives = 240/436 (55%), Gaps = 29/436 (6%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  +  +F   GYER      AD+ V+NTC +     +K    + R    
Sbjct: 8   TLGCKVNHYETEAIWQLFKQGGYERTEYEKKADVYVINTCTVTNTGDKKSRQVIRRA--- 64

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               +++  D ++ V GC AQ    EI+   P V++VVG Q   ++   +E  R  ++ +
Sbjct: 65  ----VRQNPDAVICVTGCYAQTSPAEIMA-IPGVDIVVGTQDREKMLGYIEEFRQERQPI 119

Query: 151 DTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           +   ++     +E L   D  Y   R   A L IQEGC+ FCTFC++P+ RG+  SR   
Sbjct: 120 NAVRNIMKTRVYEEL---DVPYFTDR-TRASLKIQEGCNNFCTFCIIPWARGLMRSRDGK 175

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKGLVRLRYTT 267
           +V+ +A++L+D G  EI L G +     G G D +    + LL  + +E+ GL RLR ++
Sbjct: 176 EVIKQAQQLVDAGYKEIVLTGIHTG---GYGEDIKDYNLAGLLRDMEAEVGGLKRLRISS 232

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
                +SD +I+     +V++ +LH+P+QSGS+ +LK M R++T   +++ +DR++   P
Sbjct: 233 IEASQISDEVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALP 292

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
            +AI+SD IVGFPGET+++F  T + + +  +++   F YS R GTP + M +QV E+VK
Sbjct: 293 GLAITSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVK 352

Query: 388 AE---RLLCLQKKLREQQVS-FNDACVGQIIEVLIE---KHGKEKGKLVGRSPWLQSVVL 440
            +   RL+ L  +L ++  S F D    +++E++ E   K G  KG  VG +     +V 
Sbjct: 353 NDRVHRLIELSNQLAKEYASQFED----EVLEIIPEEQFKEGDRKGLYVGYTDNYLKIVF 408

Query: 441 NSKNHNIGDIIKVRIT 456
                 IG ++KV+IT
Sbjct: 409 EGSEDLIGKLVKVKIT 424


>gi|197303019|ref|ZP_03168067.1| hypothetical protein RUMLAC_01746 [Ruminococcus lactaris ATCC
           29176]
 gi|197297874|gb|EDY32426.1| hypothetical protein RUMLAC_01746 [Ruminococcus lactaris ATCC
           29176]
          Length = 440

 Score =  221 bits (564), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 148/451 (32%), Positives = 239/451 (52%), Gaps = 30/451 (6%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ D+  M  +  S+GYE  +   +AD+IV+NTC     A E+    +  +  L
Sbjct: 7   SLGCDKNLVDTEVMLGLLASKGYEMTDDEQEADIIVINTCCFIHDAKEESIQNILEMAEL 66

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
           K    KEG    ++V GC+A+   +EIL   P V+ V+G   Y ++ + ++ A  G + V
Sbjct: 67  K----KEGKVKALIVTGCMAERYKDEILEEIPEVDEVLGTTAYDKILDAVDAALEGNQEV 122

Query: 151 ---DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
              D D     + +RL    G +       A+L I EGCDK CT+C++P  RG   S  +
Sbjct: 123 ILSDIDALPLPETKRLVTTGGHF-------AYLKIAEGCDKHCTYCIIPKVRGNYRSVPM 175

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
            ++V+EAR+L + GV E+ L+ Q    + GK L GEK +   L+  L  I G+  +R   
Sbjct: 176 ERLVNEARELAEQGVKELILVAQETTLY-GKDLYGEK-SLHKLVKELCNISGIRWIRILY 233

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
            +P +++D LI+   +   +  YL LP+Q  +D ILK M RR T  E   I++++RS  P
Sbjct: 234 CYPEEITDELIQVMKEEPKVCHYLDLPIQHANDTILKRMGRRTTKQELVHIVEKLRSEIP 293

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
           DI + +  I GFPGET +     M  VD++ + +   F YSP   TP + M EQ++E VK
Sbjct: 294 DICLRTTLITGFPGETAEQHEELMQFVDEMEFDRLGVFTYSPEEDTPAAGMPEQIEEEVK 353

Query: 388 AERLLCLQKKLRE--QQVSFNDA--CVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVV 439
            +R    Q ++ E  Q+++F+ A   +G+ + V+IE    ++   VGR+    P +  ++
Sbjct: 354 EDR----QAEIMELQQEIAFDKAEDMIGREVLVMIEGKVADENAYVGRTYRDAPNVDGLI 409

Query: 440 LNSKNHNI--GDIIKVRITDVKISTLYGELV 468
             + +  +  GD  +V++T      L GEL+
Sbjct: 410 FINTDEELLSGDFARVKVTGALDYDLIGELL 440


>gi|229543808|ref|ZP_04432867.1| RNA modification enzyme, MiaB family [Bacillus coagulans 36D1]
 gi|229324947|gb|EEN90623.1| RNA modification enzyme, MiaB family [Bacillus coagulans 36D1]
          Length = 450

 Score =  221 bits (564), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 139/432 (32%), Positives = 236/432 (54%), Gaps = 21/432 (4%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  M  +F   GYER +   +AD+ V+NTC +     +K    + R    
Sbjct: 8   TLGCKVNHYETEAMWQLFKKAGYERTDFETNADVYVINTCTVTNTGDKKSRQVIRRA--- 64

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               +++  D +V V GC AQ    EIL   P V+VVVG Q   ++   +E+    ++ V
Sbjct: 65  ----VRQNPDAVVCVTGCYAQTSPGEILE-IPGVDVVVGTQDRTKMLGYIEQYLKERKPV 119

Query: 151 DTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           +   ++     +E +  V    +R R   A L IQEGC+ FCTFC++P+ RG+  SR   
Sbjct: 120 NAVKNIMKNRVYEEME-VPYFTDRHR---ASLKIQEGCNNFCTFCIIPWARGLMRSRDPE 175

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE-IKGLVRLRYTT 267
           +V+ +A+KL++ G  E+ L G +     G G D +    + LL  L E ++GL R+R ++
Sbjct: 176 KVIAQAQKLVNAGYKELVLTGIHTG---GYGQDLKDYNLAMLLKDLEEKVQGLKRVRISS 232

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
                ++D +I       V++ ++H+P+QSGSD +LK M R++T  ++ + I +++   P
Sbjct: 233 IEASQLTDEVIDVIKHSKVVVRHMHVPIQSGSDTVLKRMRRKYTMDQFAERITKLKEALP 292

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
            +A++SD IVGFPGET+++F  T + + +  +A+   F YSPR GTP + M +Q+DE +K
Sbjct: 293 GLALTSDVIVGFPGETEEEFMETYNFIKEHRFAELHVFPYSPRTGTPAARMKDQIDEEIK 352

Query: 388 AE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
            E   R++ L  +L ++  S  +  V ++I     K   E G   G +     VV  +  
Sbjct: 353 NERVHRMIALSDQLAKEYASQFENEVLEVIPEEPFKEDPESGLYEGYTDNYLKVVFPATP 412

Query: 445 HNIGDIIKVRIT 456
             +G ++KV+IT
Sbjct: 413 DMVGKLVKVKIT 424


>gi|228993053|ref|ZP_04152976.1| hypothetical protein bpmyx0001_37900 [Bacillus pseudomycoides DSM
           12442]
 gi|228999103|ref|ZP_04158685.1| hypothetical protein bmyco0003_36600 [Bacillus mycoides Rock3-17]
 gi|229006651|ref|ZP_04164285.1| hypothetical protein bmyco0002_35530 [Bacillus mycoides Rock1-4]
 gi|228754512|gb|EEM03923.1| hypothetical protein bmyco0002_35530 [Bacillus mycoides Rock1-4]
 gi|228760720|gb|EEM09684.1| hypothetical protein bmyco0003_36600 [Bacillus mycoides Rock3-17]
 gi|228766701|gb|EEM15341.1| hypothetical protein bpmyx0001_37900 [Bacillus pseudomycoides DSM
           12442]
          Length = 450

 Score =  221 bits (563), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 138/432 (31%), Positives = 235/432 (54%), Gaps = 21/432 (4%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  +  +F   GYER      AD+ V+NTC +     +K    + R    
Sbjct: 8   TLGCKVNHYETEAIWQLFKQGGYERTEYEKKADVYVINTCTVTNTGDKKSRQVIRRA--- 64

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               +++  D ++ V GC AQ    EI+   P V++VVG Q   ++   +E  R  ++ +
Sbjct: 65  ----VRQNPDAVICVTGCYAQTSPAEIMA-IPGVDIVVGTQDREKMLGYIEEFRKERQPI 119

Query: 151 DTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           +   ++     +E L   D  Y   R   A L IQEGC+ FCTFC++P+ RG+  SR   
Sbjct: 120 NAVRNIMKTRVYEEL---DVPYFTDR-TRASLKIQEGCNNFCTFCIIPWARGLMRSRDGK 175

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKGLVRLRYTT 267
           +V+ +A++L+D G  EI L G +     G G D +    + LL  + +E+ GL RLR ++
Sbjct: 176 EVIHQAQQLVDAGYKEIVLTGIHTG---GYGEDMKNYNLAGLLRDMEAEVNGLKRLRISS 232

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
                +SD +I+     +V++ +LH+P+QSGS+ +LK M R++T   +++ +DR++   P
Sbjct: 233 IEASQISDEVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALP 292

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
            +AI+SD IVGFPGET+++F  T + + +  +++   F YS R GTP + M +Q+ E VK
Sbjct: 293 GLAITSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMDDQIPEEVK 352

Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIE---KHGKEKGKLVGRSPWLQSVVLNSKN 444
            +R+  L +   +    +     G+++E++ E   K G  +G  VG +     VV     
Sbjct: 353 NDRVHRLIELSNQLAKEYASQFEGEVLEIIPEEPFKDGDREGLYVGYTDNYLKVVFEGSE 412

Query: 445 HNIGDIIKVRIT 456
             IG ++KV+IT
Sbjct: 413 ELIGKLVKVKIT 424


>gi|189426248|ref|YP_001953425.1| MiaB-like tRNA modifying enzyme YliG [Geobacter lovleyi SZ]
 gi|238066235|sp|B3EAM2|RIMO_GEOLS RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|189422507|gb|ACD96905.1| MiaB-like tRNA modifying enzyme YliG [Geobacter lovleyi SZ]
          Length = 449

 Score =  221 bits (563), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 156/460 (33%), Positives = 242/460 (52%), Gaps = 29/460 (6%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCH-IREKAAEKV 80
           +  Q+  + S GC  N+ D+  M  +   QGYE      +AD+I++NTC  I+E   E V
Sbjct: 4   LAKQKVSMVSLGCPKNLVDAEVMLGVLAQQGYEITMDEKEADVIIVNTCSFIKEAREESV 63

Query: 81  YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140
            + L    +L + R  +G    +VVAGC+ Q   EE+ +  P V++++G   Y R+ E+L
Sbjct: 64  DAIL----DLAD-RKSDGNCKTLVVAGCLPQRYQEELAKELPEVDILIGTGDYPRVAEIL 118

Query: 141 ERARFG----KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
                G    K V D +Y  ++   RL+   G Y       A+L I EGC   CT+CV+P
Sbjct: 119 AEHHAGDAQIKYVGDPNYIYDEDLPRLNSSPGWY-------AYLKIGEGCSNCCTYCVIP 171

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256
             RG   SR +  +V EA +L+  GV E+ L+ Q++  + G  +D +  + + L+  L+ 
Sbjct: 172 SLRGPYRSRPVEALVAEAERLVKGGVRELILVSQDITRY-GSDMD-DTSSLAGLIRRLAA 229

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           I+ L  +R   ++P  +SD LI+       L  YL +P+Q  SD +L+ M RR +  + R
Sbjct: 230 IEDLKWIRLLYAYPDGISDELIELFKTEPKLCNYLDIPIQHISDNVLQRMKRRSSEEQIR 289

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
            +I R+R+  P I + +  IVGFPGET DDF      V+K  + +   F YS   GTP +
Sbjct: 290 TLIARLRNEIPGITLRTSLIVGFPGETVDDFLNLTQFVEKAQFDRLGVFCYSREEGTPAA 349

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSF--NDACVGQIIEVLIEKHGKE-----KGKLV 429
            M +QV E VK ER   L K   + +VSF  N A VGQ  +V++E + +E     KG+  
Sbjct: 350 EMPDQVSERVKRERHRKLMKT--QARVSFRRNRAMVGQTEQVIVEGYSEETELLLKGRTS 407

Query: 430 GRSPWLQ-SVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            ++P +   V + S +  IGDI+  +ITD     L  E++
Sbjct: 408 RQAPDIDGQVYITSGHAEIGDIVACKITDSSDYDLVAEMI 447


>gi|15894568|ref|NP_347917.1| Fe-S oxidoreductase [Clostridium acetobutylicum ATCC 824]
 gi|15024215|gb|AAK79257.1|AE007641_3 Fe-S oxidoreductases [Clostridium acetobutylicum ATCC 824]
 gi|325508700|gb|ADZ20336.1| Fe-S oxidoreductase [Clostridium acetobutylicum EA 2018]
          Length = 436

 Score =  221 bits (563), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 143/445 (32%), Positives = 242/445 (54%), Gaps = 23/445 (5%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y+S  M + F   G+E V++ + AD  V+NTC +      K    + R R  
Sbjct: 7   TLGCRVNSYESEAMAEKFIKSGWEIVDNDEKADAYVINTCTVTNMGDRKSRQMISRAR-- 64

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT-----YYRLPELLERARF 145
                K   D ++   GC +Q E E++      V++V+G +      +Y    + ER + 
Sbjct: 65  -----KANKDAVIAAVGCYSQVEPEKVAEIEG-VDIVLGTKNKGDIIHYVNKFIEERNQI 118

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
              V   D   + KFE L+I D   ++ R   AFL IQ+GC++FC++C++PY RG   S+
Sbjct: 119 ---VNVKDVFTDKKFEDLNI-DEYQDKTR---AFLKIQDGCNRFCSYCLIPYARGGVCSK 171

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           +  +V+ E ++L ++G  EI L G ++ ++ G  L G+    S ++    +I G+ R+R 
Sbjct: 172 NPEKVIGEIKRLAEHGFKEIILSGIHIASY-GDDLKGDWNLIS-IIEKAEQIDGIERIRI 229

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
            +  PR   +  I    ++  + P+ HL +QSG    L+ MNR++TA EY++I+ ++R  
Sbjct: 230 GSIEPRFFDEDTISKIKNMKKMCPHFHLSLQSGCTETLERMNRKYTAEEYKEIVYKLREN 289

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
             D++I++D IVGFPGETD++F  T D + +I  A+   FKYSPR GT  + M  Q++ N
Sbjct: 290 ISDVSITTDVIVGFPGETDEEFEKTYDFLKEIELAKMHVFKYSPREGTKAAAMKNQINGN 349

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GRSPWLQSVVLNSKN 444
           VK +R   L +  +  +  F    + + ++VL EK  +E   L  G +P    VV+ S  
Sbjct: 350 VKDKRSAELIELDKINEKKFMSKFLDREMDVLFEKKLEENEDLYEGYTPNYIKVVVKSSE 409

Query: 445 HNIGDIIKVRITDVKISTLYGELVV 469
                I+KV++T+++   L GEL++
Sbjct: 410 DISRKILKVKLTEIQDEHLLGELIL 434


>gi|291563521|emb|CBL42337.1| SSU ribosomal protein S12P methylthiotransferase
           [butyrate-producing bacterium SS3/4]
          Length = 445

 Score =  221 bits (562), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 147/446 (32%), Positives = 228/446 (51%), Gaps = 24/446 (5%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC-HIREKAAEKVYSFLGRIRN 89
           S GC  N+ D+ +M  +   +GY  V+  ++AD++V+NTC  I +   E + + L     
Sbjct: 7   SLGCDKNLVDTEKMLGILGKEGYSFVDDENEADIVVVNTCCFIGDAKEESINTILQMAEL 66

Query: 90  LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR- 148
            KN R+K      ++V GC+AQ   +EI+   P V+ ++G  +Y  +   +     G+  
Sbjct: 67  KKNGRLK-----ALIVTGCLAQRYKQEIIDEIPEVDAILGTTSYEAVGAAIREVMDGETP 121

Query: 149 --VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
                 D  V    ERL    G Y       AFL I EGCDK CT+C++PY RG   S  
Sbjct: 122 EIFESIDAPVSTATERLITTGGHY-------AFLKIAEGCDKRCTYCIIPYLRGKYRSVP 174

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
           + Q+V EA +L + GV E+ L+ Q    + GK L GEK    +LL  L+ + G+  +R  
Sbjct: 175 MEQLVREAEELAEKGVKELILVAQETTLY-GKDLYGEK-KLPELLRRLAAVSGIQWIRLQ 232

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
             +P +++D LI+     + +  YL +P+Q  SD +LK M RR    E R +I ++R   
Sbjct: 233 YCYPEEITDELIETIKTEEKVCNYLDIPIQHASDAVLKRMGRRTNNKEIRGLIAKLRKEI 292

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           PDIA+ +  I GFPGE ++D    M  VD + + +   F YSP   TP  +   QV E V
Sbjct: 293 PDIALRTTLISGFPGEMEEDHEILMQFVDDMEFDRLGVFAYSPEEDTPAFSFENQVPEEV 352

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVVLNS 442
           K ERL  + +  +E     ++A  G+ +EV+IE    ++   VGR    SP +  ++  +
Sbjct: 353 KQERLDEIMELQQEIAFEKSEAMKGRTLEVMIEGKVADENAYVGRTYMDSPNVDGLIFVN 412

Query: 443 KNHNI--GDIIKVRITDVKISTLYGE 466
              ++  GD +KVR+T      L GE
Sbjct: 413 TGLSLMSGDFLKVRVTGASEYDLIGE 438


>gi|229062008|ref|ZP_04199334.1| hypothetical protein bcere0026_40810 [Bacillus cereus AH603]
 gi|228717317|gb|EEL68990.1| hypothetical protein bcere0026_40810 [Bacillus cereus AH603]
          Length = 450

 Score =  221 bits (562), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 140/432 (32%), Positives = 237/432 (54%), Gaps = 21/432 (4%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  +  +F   GYER      +D+ V+NTC +     +K    + R    
Sbjct: 8   TLGCKVNHYETEAIWQLFKQGGYERTEYEKKSDVYVINTCTVTNTGDKKSRQVIRRA--- 64

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               +++  D ++ V GC AQ    EI+   P V++VVG Q   ++   +E  R  ++ +
Sbjct: 65  ----VRQNPDAVICVTGCYAQTSPAEIMA-IPGVDIVVGTQDREKMLGYIEEFRKERQPI 119

Query: 151 DTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           +   ++     +E L   D  Y   R   A L IQEGC+ FCTFC++P+ RG+  SR   
Sbjct: 120 NAVRNIMKTRVYEEL---DVPYFTDR-TRASLKIQEGCNNFCTFCIIPWARGLMRSRDGK 175

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKGLVRLRYTT 267
           +V+ +A++L+D G  EI L G +     G G D ++   + LL  + +E+ GL RLR ++
Sbjct: 176 EVIKQAQQLVDAGYKEIVLTGIHTG---GYGEDIKEYNLAGLLRDMEAEVGGLKRLRISS 232

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
                +SD +I+     +V++ +LH+P+QSGS+ +LK M R++T   +++ +DR++   P
Sbjct: 233 IEASQISDEVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALP 292

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
            +AI+SD IVGFPGET+++F  T + + +  +++   F YS R GTP + M +QV E+VK
Sbjct: 293 GLAITSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVK 352

Query: 388 AE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
            +   RL+ L  +L ++  S  +  V +II     K G  +G  VG +     +V     
Sbjct: 353 NDRVHRLIELSNQLAKEYASKFEGEVLEIIPEETFKDGDREGLYVGYTDNYLKIVFEGSE 412

Query: 445 HNIGDIIKVRIT 456
             IG ++KV+IT
Sbjct: 413 ELIGKLVKVKIT 424


>gi|229086881|ref|ZP_04219040.1| hypothetical protein bcere0022_34550 [Bacillus cereus Rock3-44]
 gi|228696391|gb|EEL49217.1| hypothetical protein bcere0022_34550 [Bacillus cereus Rock3-44]
          Length = 450

 Score =  221 bits (562), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 138/432 (31%), Positives = 235/432 (54%), Gaps = 21/432 (4%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  +  +F   GYER      AD+ V+NTC +     +K    + R    
Sbjct: 8   TLGCKVNHYETEAIWQLFKQGGYERTEYEKKADVYVINTCTVTNTGDKKSRQVIRRA--- 64

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               +++  D ++ V GC AQ    EI+   P V++VVG Q   ++   +E  R  ++ +
Sbjct: 65  ----VRQNPDAVICVTGCYAQTSPAEIMA-IPGVDIVVGTQDREKMLGYIEEFRKERQPI 119

Query: 151 DTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           +   ++     +E L   D  Y   R   A L IQEGC+ FCTFC++P+ RG+  SR   
Sbjct: 120 NAVRNIMKTRVYEEL---DVPYFTDR-TRASLKIQEGCNNFCTFCIIPWARGLMRSRDGK 175

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKGLVRLRYTT 267
           +V+ +A++L+D G  EI L G +     G G D +    + LL  + +E+ GL RLR ++
Sbjct: 176 EVIHQAQQLVDAGYKEIVLTGIHTG---GYGEDIKDYNLAGLLRDMEAEVSGLKRLRISS 232

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
                +SD +I+     +V++ +LH+P+QSGS+ +LK M R++T   +++ +DR++   P
Sbjct: 233 IEASQISDEVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALP 292

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
            +AI+SD IVGFPGET+++F  T + + +  +++   F YS R GTP + M +Q+ E VK
Sbjct: 293 GLAITSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQIPEEVK 352

Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIE---KHGKEKGKLVGRSPWLQSVVLNSKN 444
            +R+  L +   +    +     G+++E++ E   K G  +G  VG +     VV     
Sbjct: 353 NDRVHRLIELSNQLAKEYASQFEGEVLEIIPEEPFKDGDREGLYVGYTDNYLKVVFEGSE 412

Query: 445 HNIGDIIKVRIT 456
             IG ++KV+IT
Sbjct: 413 ELIGKLVKVKIT 424


>gi|260437149|ref|ZP_05790965.1| RNA modification enzyme, MiaB family [Butyrivibrio crossotus DSM
           2876]
 gi|292810461|gb|EFF69666.1| RNA modification enzyme, MiaB family [Butyrivibrio crossotus DSM
           2876]
          Length = 439

 Score =  221 bits (562), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 147/456 (32%), Positives = 244/456 (53%), Gaps = 31/456 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC  N+ DS  M  +   +GYE  ++ ++AD+IV+NTC     A E+  + + 
Sbjct: 2   KLLFISLGCDKNLVDSEMMMGLLHDRGYEFTDNEEEADIIVINTCGFINDAKEESINTI- 60

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
               L+ ++ KE     ++VAGC+ +    EIL+  P ++ +VG   + ++ ++++    
Sbjct: 61  ----LEMAKYKENNLKALIVAGCLVERYKNEILQELPEIDAIVGTTAFDKICDVVDDVLA 116

Query: 146 GKR---VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            K+   +   +       +R+ I  GGY       ++L I EGCDK CT+C +P  RG  
Sbjct: 117 DKKHNELESINKMCRPDVKRI-ITTGGY------YSYLKIAEGCDKHCTYCSIPMIRGAY 169

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            S  + ++V EA  L DNGV E+ ++ Q +  + GK L GEK    +LL+ L +I G+  
Sbjct: 170 RSVPMDELVKEAEYLADNGVKELIIVAQEITVY-GKDLYGEK-KLPELLHRLCKIPGIQW 227

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R    +P +++D LI+       +  Y+ +P+Q  SD+ILK+M RR    E R II ++
Sbjct: 228 IRLLYCYPEEITDELIETIRTEKKICHYIDMPIQHASDKILKAMGRRTNNVELRNIISKL 287

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R   PDI + +  I GFPGET++D +  +D +D++ + +   F YSP   T  +++  QV
Sbjct: 288 RKEIPDICLRTTLITGFPGETEEDHQILLDFIDEMEFDRLGVFTYSPEEDTKAASLDNQV 347

Query: 383 DENVKAERLLCLQKKLRE--QQVSFNDA--CVGQIIEVLIEKHGKEKGKLVGRS----PW 434
           DE VK    LC + ++ E  Q++S + +   VG+ IEV+IE    ++   VGRS    P 
Sbjct: 348 DEEVK----LCRKDEIMELQQEISMDKSERLVGKEIEVIIEGKASDEDVYVGRSYMDAPS 403

Query: 435 LQS-VVLNSKNHNI-GDIIKVRITDVKISTLYGELV 468
           +   V +NS+   + GD  KVRI       L G+L+
Sbjct: 404 VDGYVFINSEEELMSGDFAKVRIVKAMEYDLIGDLI 439


>gi|312144012|ref|YP_003995458.1| RNA modification enzyme, MiaB family [Halanaerobium sp.
           'sapolanicus']
 gi|311904663|gb|ADQ15104.1| RNA modification enzyme, MiaB family [Halanaerobium sp.
           'sapolanicus']
          Length = 440

 Score =  221 bits (562), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 135/407 (33%), Positives = 230/407 (56%), Gaps = 25/407 (6%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  + D+F    +E V+   +AD+ ++N+C +  +AA K      R +  
Sbjct: 12  TLGCKVNQYETEAIIDIFLDNNFEIVDFSAEADVYIINSCTVTNQAASKSRKIARRAKRS 71

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
            N       D LV V GC  QA  EE+   S I + ++G     ++   +++   GK V 
Sbjct: 72  NN-------DSLVAVVGCYTQAFPEEVSSISEI-DFIMGSSNKSKIVNKVKKLLAGKNV- 122

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVT-AFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209
             D  +++  E     D    R    T A + I++GC++FC++C++PY RG   SR    
Sbjct: 123 --DNEIKEYQELKDYEDLEIKRLSNTTRANIKIEDGCNQFCSYCIIPYARGPVRSREQKS 180

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYTTS 268
           +++E +K+I  GV EI L G ++ A+   G D G K   +DL+  L+E+  L RLR ++ 
Sbjct: 181 ILNEIKKMIGQGVKEIILTGTHLGAY---GTDKGNKTALTDLMQQLTELNNLQRLRLSSI 237

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
              ++   +I    + D+  P+LHLP+QSGS+ ILK+M R +TA E+++ I++IR+  PD
Sbjct: 238 EGTEIDAKMIDLIAENDIFCPHLHLPLQSGSNEILKAMQRPYTAEEFKETINKIRAKIPD 297

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK- 387
           IAI++D IVGFPGE +  F+ T++LV ++ +++   F +S R GTP   M  +++ N+  
Sbjct: 298 IAITTDIIVGFPGENEKTFKQTLELVKELKFSKIHVFPFSAREGTPAFKMDNKLNGNIIK 357

Query: 388 --AERLLCLQKKLREQ-QVSFNDACVGQIIEVLIEK-HGKEKGKLVG 430
             +++L  + K L E+ Q +F    +GQ  +VLIE+   ++ G L G
Sbjct: 358 KFSKKLRFINKSLMEEYQANF----LGQNKKVLIEEARDQQTGFLTG 400


>gi|163942066|ref|YP_001646950.1| RNA modification protein [Bacillus weihenstephanensis KBAB4]
 gi|229013530|ref|ZP_04170664.1| hypothetical protein bmyco0001_39400 [Bacillus mycoides DSM 2048]
 gi|229169058|ref|ZP_04296774.1| hypothetical protein bcere0007_40100 [Bacillus cereus AH621]
 gi|163864263|gb|ABY45322.1| RNA modification enzyme, MiaB family [Bacillus weihenstephanensis
           KBAB4]
 gi|228614467|gb|EEK71576.1| hypothetical protein bcere0007_40100 [Bacillus cereus AH621]
 gi|228747767|gb|EEL97636.1| hypothetical protein bmyco0001_39400 [Bacillus mycoides DSM 2048]
          Length = 450

 Score =  220 bits (561), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 140/432 (32%), Positives = 237/432 (54%), Gaps = 21/432 (4%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  +  +F   GYER      +D+ V+NTC +     +K    + R    
Sbjct: 8   TLGCKVNHYETEAIWQLFKQGGYERTEYEKKSDVYVINTCTVTNTGDKKSRQVIRRA--- 64

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               +++  D ++ V GC AQ    EI+   P V++VVG Q   ++   +E  R  ++ +
Sbjct: 65  ----VRQNPDAVICVTGCYAQTSPAEIMA-IPGVDIVVGTQDREKMLGYIEEFRKERQPI 119

Query: 151 DTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           +   ++     +E L   D  Y   R   A L IQEGC+ FCTFC++P+ RG+  SR   
Sbjct: 120 NAVRNIMKTRVYEEL---DVPYFTDR-TRASLKIQEGCNNFCTFCIIPWARGLMRSRDGK 175

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKGLVRLRYTT 267
           +V+ +A++L+D G  EI L G +     G G D ++   + LL  + +E+ GL RLR ++
Sbjct: 176 EVIKQAQQLVDAGYKEIVLTGIHTG---GYGEDIKEYNLAGLLRDMEAEVGGLKRLRISS 232

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
                +SD +I+     +V++ +LH+P+QSGS+ +LK M R++T   +++ +DR++   P
Sbjct: 233 IEASQISDEVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALP 292

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
            +AI+SD IVGFPGET+++F  T + + +  +++   F YS R GTP + M +QV E+VK
Sbjct: 293 GLAITSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVK 352

Query: 388 AE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
            +   RL+ L  +L ++  S  +  V +II     K G  +G  VG +     +V     
Sbjct: 353 NDRVHRLIELSNQLAKEYASRFEGEVLEIIPEETFKDGDREGLYVGYTDNYLKIVFEGSE 412

Query: 445 HNIGDIIKVRIT 456
             IG ++KV+IT
Sbjct: 413 ELIGKLVKVKIT 424


>gi|322421215|ref|YP_004200438.1| MiaB-like tRNA modifying enzyme YliG [Geobacter sp. M18]
 gi|320127602|gb|ADW15162.1| MiaB-like tRNA modifying enzyme YliG [Geobacter sp. M18]
          Length = 448

 Score =  220 bits (561), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 148/461 (32%), Positives = 246/461 (53%), Gaps = 33/461 (7%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCH-IREKAAEKVY 81
           + ++  + S GC  N+ D+  M      + YE       AD+IV+NTC  I+E   E + 
Sbjct: 5   IKEKVSLVSLGCPKNLVDAEVMLGYLSKEAYEVTTDEMQADIIVVNTCSFIKEAKQESID 64

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL- 140
           + L       ++R K     L++V GC+ Q   EE+ +  P V++ +G   Y R+ E++ 
Sbjct: 65  TILDLADRKHDARCK-----LLIVTGCLPQRYQEELAKELPEVDIFIGTGDYPRIAEIIA 119

Query: 141 ERARFGKRVV---DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197
           E+   G ++    D ++   D+  RL             TA+L I EGC   C +CV+P 
Sbjct: 120 EKKTTGNQLCYTGDPNFVYNDELPRL-------QSSPHYTAYLKIAEGCSNNCAYCVIPA 172

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257
            RG   SR+ + +++EAR L+D GV E+ L+ Q++ A+ GK L  ++ +   L+  L+++
Sbjct: 173 LRGALRSRAFATLMNEARALVDAGVKELNLIAQDITAY-GKDL-PDQPSLELLVRELAKL 230

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
           +GL  +R   ++P  ++D LI+   +   +  YL LP+Q  +D +L  M RR    + R 
Sbjct: 231 EGLKWIRLLYAYPDGVTDSLIELIKNEPKVCKYLDLPIQHIADPVLSRMKRRSGEADIRA 290

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
           +I ++R   PDIAI +  IVGFPGET++DF+  +  V++  + +   F YS   GTP + 
Sbjct: 291 LIAKLRKEIPDIAIRTSLIVGFPGETNEDFKKLLQFVEETRFDRLGVFCYSREEGTPAAE 350

Query: 378 MLEQVDENVKAERLLCLQKKLREQQ--VSF--NDACVGQIIEVLIEKHGKE-----KGKL 428
           M +QV E +K ER     KKL   Q  VSF  N   V    +VL+E + +E     KG+ 
Sbjct: 351 MPDQVSERIKRER----HKKLMRTQARVSFKHNRTLVDSEEDVLVEGYSEETELLLKGRS 406

Query: 429 VGRSPWLQSVV-LNSKNHNIGDIIKVRITDVKISTLYGELV 468
             ++P +  +V + + N N+GDI++++ITD     L GE++
Sbjct: 407 SRQAPDVDGLVYITAGNANVGDIVRLKITDSSDYDLIGEII 447


>gi|291522428|emb|CBK80721.1| SSU ribosomal protein S12P methylthiotransferase [Coprococcus catus
           GD/7]
          Length = 454

 Score =  220 bits (560), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 147/454 (32%), Positives = 239/454 (52%), Gaps = 28/454 (6%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           FFV S GC  N+ DS  M  +  + G+  V+   +AD+IV+NTC     A E+    +  
Sbjct: 12  FFV-SLGCDKNLVDSEVMLGILRAHGFTLVDDEIEADIIVVNTCSFIHDAKEESIQTILE 70

Query: 87  IRNLKNS-RIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           +  +K+S R K      ++V GC+A+   +EI+     V+ V+G  +Y  + E++     
Sbjct: 71  MAEMKHSCRCK-----ALIVTGCMAERYKDEIMTEIEEVDAVIGTTSYQHIAEVVAEVLE 125

Query: 146 GKRVV---DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           G++V    D     E   +R+ +  GGY      +++L I EGCDK CT+C++P  RG  
Sbjct: 126 GQKVKQFDDLQAMPEVDVQRI-MTTGGY------SSYLKIAEGCDKHCTYCIIPKLRGSY 178

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            S S+  ++ +A  L   GV E+ ++ Q    +     +G+K    +LL  L  I+GL  
Sbjct: 179 RSHSMDYLIKQAESLAAQGVKELNIVAQETTVYGTDLYNGQK-MLPELLKRLCRIEGLSW 237

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R    +P ++++ LI+   +   +  YL LP+Q GSD +LK M RR T  E R II R+
Sbjct: 238 IRVLYCYPEEINEELIQVIKEEPKICHYLDLPIQHGSDAVLKRMGRRTTQAELRSIIGRL 297

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R   PDIA+ +  I GFPGET+ D +  +  V  + + +   F YS   GTP + M +Q+
Sbjct: 298 REEIPDIALRTTLIAGFPGETEADHQEALQFVKDMRFDRLGVFTYSEEEGTPAAQMPDQI 357

Query: 383 DENVKAERLLCLQKKLREQQVSFN--DACVGQIIEVLIEKHGKEKGKLVGRS----PWLQ 436
           DE VK  R   L   + +Q ++F+  +  VG+ ++VLIE    E+   +GR+    P + 
Sbjct: 358 DEAVKETRRDALM--MAQQAIAFDKSEEMVGKTVDVLIEGRLPEEDVYIGRTYRDAPDVD 415

Query: 437 SVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468
             V      ++  GDI+KV+ITD +   L G+++
Sbjct: 416 GYVFVHAEEDMISGDIVKVKITDAQDYDLVGDVI 449


>gi|166031237|ref|ZP_02234066.1| hypothetical protein DORFOR_00924 [Dorea formicigenerans ATCC
           27755]
 gi|166029084|gb|EDR47841.1| hypothetical protein DORFOR_00924 [Dorea formicigenerans ATCC
           27755]
          Length = 428

 Score =  220 bits (560), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 131/435 (30%), Positives = 239/435 (54%), Gaps = 29/435 (6%)

Query: 33  GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92
           GC++N Y++  M+++    GYE V   + AD+ ++NTC +   A  K    L + R +  
Sbjct: 11  GCKVNAYETEAMQELLEQNGYEIVPFKEGADVYIINTCTVTNIADRKSRQMLHKARKM-- 68

Query: 93  SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE-----RARFGK 147
                  D +VV  GC  QA GE+I    P V++VVG      L  +L+     + +  K
Sbjct: 69  -----NPDAVVVATGCYVQARGEDI---DPCVDIVVGNNKKKDLIAILDEYYNAQHKVKK 120

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
            ++D ++  E ++E + +     + +    A++ +Q+GC++FC++C++PY RG   SR+L
Sbjct: 121 ELLDINH--EKEYEEMQVTHTAEHTR----AYIKVQDGCNQFCSYCIIPYARGRVRSRNL 174

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYT 266
             V++E R L  +G  E+ L G +++++   G+D GE  +  +L+  + EI G+ R+R  
Sbjct: 175 EHVLEEVRTLAASGYKEVVLTGIHLSSY---GIDTGE--SLLELIQKVHEIDGIKRIRLG 229

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
           +  PR +++    +   L  + P+ HL +QSG +  L+ MNRR++A EY +  D +R   
Sbjct: 230 SLEPRIITEEFASSIAALPKMCPHFHLSLQSGCNATLRRMNRRYSAEEYMEKCDLLRKYF 289

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
            + A+++D IVGFPGET ++F  +MD VD++ + +   FKYS R GT  + M +Q+ E +
Sbjct: 290 HNPALTTDVIVGFPGETQEEFAESMDFVDRVNFYETHIFKYSRRAGTKAAVMPDQIPEEI 349

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL--VGRSPWLQSVVLNSKN 444
           K+ER   + +    +Q ++ +  +G   EVL+E+  + +  +  VG +     + L ++ 
Sbjct: 350 KSERSAKMIELGHRKQKAYEERLLGTTQEVLMEEAVETEDGIYQVGHTKEYVKIGLKTEE 409

Query: 445 HNIGDIIKVRITDVK 459
           +    +  V+I D K
Sbjct: 410 NLSNQLKNVKIEDTK 424


>gi|329122066|ref|ZP_08250674.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Dialister micraerophilus
           DSM 19965]
 gi|327466873|gb|EGF12389.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Dialister micraerophilus
           DSM 19965]
          Length = 445

 Score =  220 bits (560), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 138/452 (30%), Positives = 239/452 (52%), Gaps = 17/452 (3%)

Query: 19  DQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAE 78
           +QC   ++    + GC++N YDS  M  +F  +GY+ V   + AD+ ++NTC +      
Sbjct: 6   EQCKNTKKVSFITLGCKVNQYDSDAMRTLFIHRGYKPVEHSEVADVYIINTCSVTSIGDR 65

Query: 79  KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPE 138
           K    + +IR       +   D ++   GC AQ   EE L +   V+V+VG Q   ++ +
Sbjct: 66  KSRQVIRKIR-------RNNPDAVIAATGCYAQVAPEE-LEKMGDVDVIVGHQNRNKIVD 117

Query: 139 LLERARFGKRVVDT--DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
            +E A   ++ V+   D     ++E L++   G  + R   AF+ +QEGCD +CTFC++P
Sbjct: 118 YIEEAEKSEKTVNAVKDIMSIREYENLTVDPEGEVKAR---AFVKVQEGCDNYCTFCIIP 174

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256
           Y RG   SR     VDE +KL++ G  E+ L G ++  + GK L     + S L+  L +
Sbjct: 175 YARGRLKSRKQEDAVDEIKKLVEKGYREVVLTGIHLGNY-GKDLRN-GTSLSTLVSELLK 232

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           I  L+R+R  +    ++SD LI    +   +  +LHLP+QSGSD +LKSMNR +   +Y+
Sbjct: 233 IPNLLRIRLGSIESVELSDELINIIKNEKRVCHHLHLPLQSGSDAVLKSMNRHYRLRQYK 292

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
            +I  +R   P++A+++D IVGFPGET+++F+ T++ + ++ ++    F +S R GTP +
Sbjct: 293 DLIAMLRKKIPNLALTTDLIVGFPGETEENFKETLNTLHELKFSAIHVFPFSKRTGTPAA 352

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQ 436
               Q+    K +R+  +Q+  ++    F    + +I+ VL E   K++    G S    
Sbjct: 353 MYPNQITNEEKKKRVHRVQELEKKISKEFRCEFLNKIVHVLAE--NKKEEYFEGFSDEYI 410

Query: 437 SVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            V +  +N   G +  V + +V    L G ++
Sbjct: 411 RVTIKGENVKRGHLYSVIVEEVTDEGLIGRVI 442


>gi|322795992|gb|EFZ18616.1| hypothetical protein SINV_04486 [Solenopsis invicta]
          Length = 503

 Score =  220 bits (560), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 126/368 (34%), Positives = 206/368 (55%), Gaps = 30/368 (8%)

Query: 28  FVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRI 87
           + K YGCQMN  D+  +  +  S GY+    ++DAD+++L TC IR+ A +K+++ L  +
Sbjct: 126 YFKIYGCQMNENDADIIWSVLKSHGYKHTQYLEDADIVLLITCAIRDNAEQKIWNKLENL 185

Query: 88  RNLKNSRIKE--GGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
             ++N +IK   G  + + + GC+A+    +IL R  +V+V+ GP +Y  LP LL     
Sbjct: 186 NGIRN-KIKRITGRSMKIGLLGCMAERLKTKILDRGKLVDVIAGPDSYKDLPRLLAVTD- 243

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            +  ++   S ++ +  ++ +      +    A+++I  GCD  CT+C+VP+TRG E SR
Sbjct: 244 NETAINVVLSFDETYADVTPIRLN---QDSTGAYVSIMRGCDNMCTYCIVPFTRGRERSR 300

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWR-----------------GKGLDG------ 242
            ++ +++E R+L D GV EITLLGQNVN++R                  KG         
Sbjct: 301 PVASILEEVRQLSDQGVKEITLLGQNVNSYRDLSKSEFVLSVNTDTHLAKGFKTVYKNKK 360

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
               FSDLL  +S I   +R+R+T+ HP+D  D ++    +   +   +HLP QSG+  I
Sbjct: 361 GGLRFSDLLDQVSLINPEIRIRFTSPHPKDFPDEVLHLIAERPNICKQIHLPAQSGNSII 420

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           L+ M R +T   Y  ++  IR + P+I  SSDFI GF GET++ F+ T+ L++++ Y  A
Sbjct: 421 LERMRRGYTREAYLDLVYHIRDILPNINFSSDFIAGFCGETEEQFQDTLSLIEEVKYNCA 480

Query: 363 FSFKYSPR 370
           + F YS R
Sbjct: 481 YLFAYSMR 488


>gi|313891670|ref|ZP_07825277.1| tRNA methylthiotransferase YqeV [Dialister microaerophilus UPII
           345-E]
 gi|313119948|gb|EFR43133.1| tRNA methylthiotransferase YqeV [Dialister microaerophilus UPII
           345-E]
          Length = 445

 Score =  219 bits (559), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 138/452 (30%), Positives = 239/452 (52%), Gaps = 17/452 (3%)

Query: 19  DQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAE 78
           +QC   ++    + GC++N YDS  M  +F  +GY+ V   + AD+ ++NTC +      
Sbjct: 6   EQCKNTKKVSFITLGCKVNQYDSDAMRTLFIHRGYKPVEHPEVADVYIINTCSVTSIGDR 65

Query: 79  KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPE 138
           K    + +IR       +   D ++   GC AQ   EE L +   V+V+VG Q   ++ +
Sbjct: 66  KSRQVIRKIR-------RNNPDAVIAATGCYAQVAPEE-LEKMGDVDVIVGHQDRNKIVD 117

Query: 139 LLERARFGKRVVDT--DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
            +E A   ++ V+   D     ++E L++   G  + R   AF+ +QEGCD +CTFC++P
Sbjct: 118 YIEEAEKSEKTVNAVKDIMSIREYENLTVDPEGEVKAR---AFVKVQEGCDNYCTFCIIP 174

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256
           Y RG   SR     VDE +KL++ G  E+ L G ++  + GK L     + S L+  L +
Sbjct: 175 YARGRLKSRKQEDAVDEIKKLVEKGYREVVLTGIHLGNY-GKDLRN-GTSLSTLVSELLK 232

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           I  L+R+R  +    ++SD LI    +   +  +LHLP+QSGSD +LKSMNR +   +Y+
Sbjct: 233 IPNLLRIRLGSIESVELSDELINIIKNEKRVCHHLHLPLQSGSDAVLKSMNRHYRLKQYK 292

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
            +I  +R   P++A+++D IVGFPGET+++F+ T++ + ++ ++    F +S R GTP +
Sbjct: 293 DLIAMLREKIPNLALTTDLIVGFPGETEENFKETLNTLHELNFSAIHVFPFSKRTGTPAA 352

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQ 436
               Q+    K +R+  +Q+  ++    F    + +I+ VL E   K++    G S    
Sbjct: 353 MYPNQITNEEKKKRVHRVQELEKKISKEFRCEFLNKIVHVLAE--NKKEEYFEGFSDEYI 410

Query: 437 SVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            V +  +N   G +  V + +V    L G ++
Sbjct: 411 RVTIKGENVKRGHLYSVIVEEVTDEGLIGRVI 442


>gi|229019534|ref|ZP_04176351.1| hypothetical protein bcere0030_40370 [Bacillus cereus AH1273]
 gi|229025776|ref|ZP_04182175.1| hypothetical protein bcere0029_40670 [Bacillus cereus AH1272]
 gi|228735484|gb|EEL86080.1| hypothetical protein bcere0029_40670 [Bacillus cereus AH1272]
 gi|228741790|gb|EEL91973.1| hypothetical protein bcere0030_40370 [Bacillus cereus AH1273]
          Length = 450

 Score =  219 bits (559), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 137/432 (31%), Positives = 236/432 (54%), Gaps = 21/432 (4%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  +  +F   GYER      +D+ V+NTC +     +K    + R    
Sbjct: 8   TLGCKVNHYETEAIWQLFKQGGYERTEYEKKSDVYVINTCTVTNTGDKKSRQVIRRA--- 64

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               +++  D ++ V GC AQ    EI+   P V++VVG Q   ++   +E  R  ++ +
Sbjct: 65  ----VRQNPDAVICVTGCYAQTSPAEIMA-IPGVDIVVGTQDREKMLGYIEEFRKERQPI 119

Query: 151 DTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           +   ++     +E L   D  Y   R   A L IQEGC+ FCTFC++P+ RG+  SR   
Sbjct: 120 NAVRNIMKTRVYEEL---DVPYFTDR-TRASLKIQEGCNNFCTFCIIPWARGLMRSRDGK 175

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKGLVRLRYTT 267
           +V+ +A++L+D G  EI L G +     G G D +    + LL  + +E+ GL RLR ++
Sbjct: 176 EVIKQAQQLVDAGYKEIVLTGIHTG---GYGEDIKDYNLAGLLRDMEAEVGGLKRLRISS 232

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
                +SD +I+     +V++ +LH+P+QSGS+ +LK M R++T   +++ +DR++   P
Sbjct: 233 IEASQISDEVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALP 292

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
            +AI+SD IVGFPGET+++F  T + + +  +++   F YS R GTP + M +QV E+VK
Sbjct: 293 GLAITSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVK 352

Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIE---KHGKEKGKLVGRSPWLQSVVLNSKN 444
            +R+  L +   +    +     G+++E++ E   K G  +G  VG +     +V     
Sbjct: 353 NDRVHRLIELSNQLAKEYASQFEGEVLEIIPEEQFKEGDREGLYVGYTDNYLKIVFEGSE 412

Query: 445 HNIGDIIKVRIT 456
             IG ++KV+IT
Sbjct: 413 DLIGKLVKVKIT 424


>gi|229075984|ref|ZP_04208957.1| hypothetical protein bcere0024_40230 [Bacillus cereus Rock4-18]
 gi|229104941|ref|ZP_04235597.1| hypothetical protein bcere0019_40790 [Bacillus cereus Rock3-28]
 gi|229117807|ref|ZP_04247171.1| hypothetical protein bcere0017_40780 [Bacillus cereus Rock1-3]
 gi|228665604|gb|EEL21082.1| hypothetical protein bcere0017_40780 [Bacillus cereus Rock1-3]
 gi|228678435|gb|EEL32656.1| hypothetical protein bcere0019_40790 [Bacillus cereus Rock3-28]
 gi|228707096|gb|EEL59296.1| hypothetical protein bcere0024_40230 [Bacillus cereus Rock4-18]
          Length = 450

 Score =  219 bits (559), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 137/432 (31%), Positives = 236/432 (54%), Gaps = 21/432 (4%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  +  +F   GYER      +D+ V+NTC +     +K    + R    
Sbjct: 8   TLGCKVNHYETEAIWQLFKQGGYERTEYEKKSDVYVINTCTVTNTGDKKSRQVIRRA--- 64

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               +++  D ++ V GC AQ    EI+   P V++VVG Q   ++   +E  R  ++ +
Sbjct: 65  ----VRQNPDAVICVTGCYAQTSPAEIMA-IPGVDIVVGTQDREKMLGYIEEFRKERQPI 119

Query: 151 DTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           +   ++     +E L   D  Y   R   A L IQEGC+ FCTFC++P+ RG+  SR   
Sbjct: 120 NAVRNIMKTRVYEEL---DVPYFTDR-TRASLKIQEGCNNFCTFCIIPWARGLMRSRDGK 175

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKGLVRLRYTT 267
           +V+ +A++L+D G  EI L G +     G G D +    + LL  + +E+ GL RLR ++
Sbjct: 176 EVIKQAQQLVDAGYKEIVLTGIHTG---GYGEDIKDYNLAGLLRDMEAEVGGLKRLRISS 232

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
                +SD +I+     +V++ +LH+P+QSGS+ +LK M R++T   +++ +DR++   P
Sbjct: 233 IEASQISDEVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALP 292

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
            +AI+SD IVGFPGET+++F  T + + +  +++   F YS R GTP + M +QV E+VK
Sbjct: 293 GLAITSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVK 352

Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIE---KHGKEKGKLVGRSPWLQSVVLNSKN 444
            +R+  L +   +    +     G+++E++ E   K G  +G  VG +     +V     
Sbjct: 353 NDRVHRLIELSNQLAKEYASQFEGEVLEIIPEEQFKDGDREGLYVGYTDNYLKIVFEGSE 412

Query: 445 HNIGDIIKVRIT 456
             IG ++KV+IT
Sbjct: 413 ELIGKLVKVKIT 424


>gi|256545382|ref|ZP_05472745.1| Fe-S oxidoreductase [Anaerococcus vaginalis ATCC 51170]
 gi|256398943|gb|EEU12557.1| Fe-S oxidoreductase [Anaerococcus vaginalis ATCC 51170]
          Length = 432

 Score =  219 bits (559), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 138/449 (30%), Positives = 247/449 (55%), Gaps = 21/449 (4%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + + F +K+ GC++N Y+S  +E++F  +G+E+    ++AD+ V+NTC +   +  K   
Sbjct: 1   MKKTFNIKTLGCKVNQYESEAIEELFKKRGFEK--KEENADIYVINTCTVTNMSDRKSRQ 58

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            + + R       KE  D ++ V GC +Q + +E+ ++   V++++G +    + +L E 
Sbjct: 59  TISKAR-------KENKDAVIAVIGCYSQVKADEV-KKIDGVDIILGSRNKEEVVDLCEN 110

Query: 143 -ARFGKRVVDTD-YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
             +  +++ D + +S+ +  E L I     N+     A++ IQ+GC+ +C++C++PY RG
Sbjct: 111 FIKNNEKMEDVEEFSIGEAIEDLEIS----NQADMTRAYIKIQDGCNMYCSYCLIPYARG 166

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
              SR L  ++DEA++L DNG  EI L G +V ++ GK  D +  +  D++  +++I G+
Sbjct: 167 NIASRDLVSIIDEAKRLRDNGYKEIVLTGIHVASY-GKDFDLD-ISLIDVIEHIAKIDGI 224

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R ++  PR +    +K   D      + HL +QSGSD +LK MNR++T   +++ +D
Sbjct: 225 ERIRLSSMEPRHIDREFLKRMKDTKKACDHFHLSLQSGSDDVLKLMNRKYTTKVFKEKVD 284

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
            IR   P+  +++D IVGFP E++ +   T + V  I +++   FKYS R GT  ++M  
Sbjct: 285 LIREYFPNAGLTTDIIVGFPNESEKNHEETKNFVKDIKFSKTHLFKYSKRDGTKAASMKN 344

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440
           QVD N+K  R   L +  +E    F D  +G+ + VL E   +  G   G S     V  
Sbjct: 345 QVDGNIKKRRSKELSEIEKEISHEFLDKQIGKTLSVLFETKTELDGYRSGYSTNYLRV-- 402

Query: 441 NSKNH-NIGDIIKVRITDVKISTLYGELV 468
           +SK+   I +I  V+IT      L G++V
Sbjct: 403 HSKDRVEINEIKNVKITQRIDDYLIGDIV 431


>gi|167037786|ref|YP_001665364.1| MiaB-like tRNA modifying protein [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|166856620|gb|ABY95028.1| MiaB-like tRNA modifying enzyme [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
          Length = 467

 Score =  219 bits (559), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 138/448 (30%), Positives = 240/448 (53%), Gaps = 37/448 (8%)

Query: 33  GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92
           GC++N Y++  M ++F   GYE V+  + AD+ V+NTC +  ++  K    + + R    
Sbjct: 41  GCKVNQYETEVMAELFKKAGYEVVDFNEKADVYVINTCTVTNRSDMKSRQEIRKAR---- 96

Query: 93  SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDT 152
              K+  D LVV  GC  Q   EE     P V++ +G +   ++ EL+E           
Sbjct: 97  ---KKNPDALVVAVGCYVQVSPEEAFS-LPEVDIAIGTKNKDKIVELVE----------- 141

Query: 153 DYSVEDKFERLSIVDGGYNRKR----GVTAF-------LTIQEGCDKFCTFCVVPYTRGI 201
                 K ++LS+V+    +K     GVTA+       + IQ+GC+++CT+C++PY RG 
Sbjct: 142 --EFTQKNQKLSVVNNIMTQKEYEEFGVTAYTERTRAYIKIQDGCNQYCTYCIIPYARGP 199

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
             SR   +V+DE ++  D+G  EI L G ++ ++   G D +     D++  + EI G+ 
Sbjct: 200 VRSRDPKKVLDEVKRFADSGYKEIVLTGIHIASY---GKDLKNIGLLDIIKMIHEIDGIK 256

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R ++  P  +++  +K   +L  +  + H+ +QSG D  LK M RR+T  EY+ +IDR
Sbjct: 257 RIRLSSIEPTFLTEEFVKEIANLPKMCRHYHVSLQSGCDETLKRMGRRYTTKEYKSVIDR 316

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R    D+AI++D +VGFPGET+++F  T   V++I +++   FKYS R GT   N   Q
Sbjct: 317 LREYIKDVAITTDVMVGFPGETEEEFLKTYKFVEEICFSKMHVFKYSRRKGTRAYNFPNQ 376

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRSPWLQSVVL 440
           V  ++K +R   L +     +  F ++ +G+ +EVL E+  K  +G + G +    S+ +
Sbjct: 377 VANHIKEDRSKKLIELSNRCEYKFMESFIGKTLEVLFEQPVKNMEGYVEGLTDNYLSIAV 436

Query: 441 NSKNHNI-GDIIKVRITDVKISTLYGEL 467
                 +  +I  V+I ++K + L GE+
Sbjct: 437 KGDIKLLRNEIFPVKIKEIKDNFLIGEI 464


>gi|256751980|ref|ZP_05492850.1| MiaB-like tRNA modifying enzyme [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|320116201|ref|YP_004186360.1| MiaB-like tRNA modifying enzyme [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
 gi|256749185|gb|EEU62219.1| MiaB-like tRNA modifying enzyme [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|319929292|gb|ADV79977.1| MiaB-like tRNA modifying enzyme [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
          Length = 455

 Score =  219 bits (559), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 138/448 (30%), Positives = 240/448 (53%), Gaps = 37/448 (8%)

Query: 33  GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92
           GC++N Y++  M ++F   GYE V+  + AD+ V+NTC +  ++  K    + + R    
Sbjct: 29  GCKVNQYETEVMAELFKKAGYEVVDFNEKADVYVINTCTVTNRSDMKSRQEIRKAR---- 84

Query: 93  SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDT 152
              K+  D LVV  GC  Q   EE     P V++ +G +   ++ EL+E           
Sbjct: 85  ---KKNPDALVVAVGCYVQVSPEEAFSL-PEVDIAIGTKNKDKIVELVE----------- 129

Query: 153 DYSVEDKFERLSIVDGGYNRKR----GVTAF-------LTIQEGCDKFCTFCVVPYTRGI 201
                 K ++LS+V+    +K     GVTA+       + IQ+GC+++CT+C++PY RG 
Sbjct: 130 --EFTQKNQKLSVVNNIMTQKEYEEFGVTAYTERTRAYIKIQDGCNQYCTYCIIPYARGP 187

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
             SR   +V+DE ++  D+G  EI L G ++ ++   G D +     D++  + EI G+ 
Sbjct: 188 VRSRDPKKVLDEVKRFADSGYKEIVLTGIHIASY---GKDLKNIGLLDIIKMIHEIDGIK 244

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R ++  P  +++  +K   +L  +  + H+ +QSG D  LK M RR+T  EY+ +IDR
Sbjct: 245 RIRLSSIEPTFLTEEFVKEIANLPKMCRHYHVSLQSGCDETLKRMGRRYTTKEYKSVIDR 304

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R    D+AI++D +VGFPGET+++F  T   V++I +++   FKYS R GT   N   Q
Sbjct: 305 LREYIKDVAITTDVMVGFPGETEEEFLKTYKFVEEICFSKMHVFKYSRRKGTRAYNFPNQ 364

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRSPWLQSVVL 440
           V  ++K +R   L +     +  F ++ +G+ +EVL E+  K  +G + G +    S+ +
Sbjct: 365 VANHIKEDRSKKLIELSNRCEYKFMESFIGKTLEVLFEQPVKNMEGYVEGLTDNYLSIAV 424

Query: 441 NSKNHNI-GDIIKVRITDVKISTLYGEL 467
                 +  +I  V+I ++K + L GE+
Sbjct: 425 KGDIKLLRNEIFPVKIKEIKDNFLIGEI 452


>gi|30264381|ref|NP_846758.1| hypothetical protein BA_4535 [Bacillus anthracis str. Ames]
 gi|47529832|ref|YP_021181.1| hypothetical protein GBAA_4535 [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49187205|ref|YP_030457.1| hypothetical protein BAS4209 [Bacillus anthracis str. Sterne]
 gi|65321683|ref|ZP_00394642.1| COG0621: 2-methylthioadenine synthetase [Bacillus anthracis str.
           A2012]
 gi|165872059|ref|ZP_02216699.1| conserved hypothetical protein [Bacillus anthracis str. A0488]
 gi|167638687|ref|ZP_02396963.1| conserved hypothetical protein [Bacillus anthracis str. A0193]
 gi|170707478|ref|ZP_02897932.1| conserved hypothetical protein [Bacillus anthracis str. A0389]
 gi|177653235|ref|ZP_02935487.1| conserved hypothetical protein [Bacillus anthracis str. A0174]
 gi|190566951|ref|ZP_03019867.1| RNA modification enzyme, MiaB family [Bacillus anthracis
           Tsiankovskii-I]
 gi|227817086|ref|YP_002817095.1| RNA modification enzyme, MiaB family [Bacillus anthracis str. CDC
           684]
 gi|229600003|ref|YP_002868599.1| RNA modification enzyme, MiaB family [Bacillus anthracis str.
           A0248]
 gi|254736415|ref|ZP_05194121.1| RNA modification enzyme, MiaB family protein [Bacillus anthracis
           str. Western North America USA6153]
 gi|254750891|ref|ZP_05202930.1| RNA modification enzyme, MiaB family protein [Bacillus anthracis
           str. Vollum]
 gi|254757781|ref|ZP_05209808.1| RNA modification enzyme, MiaB family protein [Bacillus anthracis
           str. Australia 94]
 gi|30259039|gb|AAP28244.1| conserved hypothetical protein [Bacillus anthracis str. Ames]
 gi|47504980|gb|AAT33656.1| conserved hypothetical protein [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49181132|gb|AAT56508.1| conserved hypothetical protein [Bacillus anthracis str. Sterne]
 gi|164712190|gb|EDR17727.1| conserved hypothetical protein [Bacillus anthracis str. A0488]
 gi|167513535|gb|EDR88905.1| conserved hypothetical protein [Bacillus anthracis str. A0193]
 gi|170127722|gb|EDS96595.1| conserved hypothetical protein [Bacillus anthracis str. A0389]
 gi|172081517|gb|EDT66589.1| conserved hypothetical protein [Bacillus anthracis str. A0174]
 gi|190561942|gb|EDV15911.1| RNA modification enzyme, MiaB family [Bacillus anthracis
           Tsiankovskii-I]
 gi|227006018|gb|ACP15761.1| RNA modification enzyme, MiaB family [Bacillus anthracis str. CDC
           684]
 gi|229264411|gb|ACQ46048.1| RNA modification enzyme, MiaB family [Bacillus anthracis str.
           A0248]
          Length = 450

 Score =  219 bits (559), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 137/431 (31%), Positives = 235/431 (54%), Gaps = 21/431 (4%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  +  +F   GYER      AD+ V+NTC +     +K    + R    
Sbjct: 8   TLGCKVNHYETEAIWQLFKQGGYERTEYEKKADVYVINTCTVTNTGDKKSRQVIRRA--- 64

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               +++  D ++ V GC AQ    EI+   P V++VVG Q   ++   +E  R  ++ +
Sbjct: 65  ----VRQNPDAVICVTGCYAQTSPAEIMA-IPGVDIVVGTQDREKMLGYIEEFRKERQPI 119

Query: 151 DTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           +   ++     +E L   D  Y   R   A L IQEGC+ FCTFC++P+ RG+  SR   
Sbjct: 120 NAVRNIMKTRVYEEL---DVPYFTDR-TRASLKIQEGCNNFCTFCIIPWARGLMRSRDGK 175

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKGLVRLRYTT 267
           +V+ +A++L+D G  EI L G +     G G D +    + LL  + +E+ GL RLR ++
Sbjct: 176 EVIKQAQQLVDAGYKEIVLTGIHTG---GYGEDIKDYNLAGLLRDMEAEVGGLKRLRISS 232

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
                +SD +I+     +V++ +LH+P+QSGS+ +LK M R++T   +++ +DR++   P
Sbjct: 233 IEASQISDEVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALP 292

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
            +AI+SD IVGFPGET+++F  T + + +  +++   F YS R GTP + M +QV E+VK
Sbjct: 293 GLAITSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVK 352

Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIE---KHGKEKGKLVGRSPWLQSVVLNSKN 444
            +R+  L +   +    +     G+++E++ E   K G  +G  VG +     +V     
Sbjct: 353 NDRVHRLIELSNQLAKEYASQFEGEVLEIIPEEQFKEGDREGLYVGYTDNYLKIVFEGSE 412

Query: 445 HNIGDIIKVRI 455
             IG ++KV+I
Sbjct: 413 ELIGKLVKVKI 423


>gi|238927738|ref|ZP_04659498.1| 2-methylthioadenine synthetase [Selenomonas flueggei ATCC 43531]
 gi|238884454|gb|EEQ48092.1| 2-methylthioadenine synthetase [Selenomonas flueggei ATCC 43531]
          Length = 519

 Score =  219 bits (559), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 137/403 (33%), Positives = 215/403 (53%), Gaps = 20/403 (4%)

Query: 20  QCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEK 79
           +C V   F   + GC++N +++  ME +F ++GYE V   + AD+ V+NTC +   +  K
Sbjct: 88  RCAVRAAFM--TLGCKVNQFETETMEGLFRARGYEIVPFEERADVYVINTCSVTHLSDRK 145

Query: 80  VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL 139
               + R   +  +         + VAGC AQ   EE+ R    V VV+G +   R+ + 
Sbjct: 146 SRQIIRRAARMNPT-------ACIAVAGCYAQVSPEEV-RGLEGVRVVIGTEERARIVDY 197

Query: 140 LERARFGKRVVD--TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197
           +E A     VV+  TD      FE + +  G  +R R   AFL I++GC  FC+FC++PY
Sbjct: 198 VEEALHADGVVEEITDVMQARAFEDIPL-HGVPHRTR---AFLKIEDGCQNFCSFCIIPY 253

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSE 256
            RG   SR L+ V  E  KL   G  E+ L G ++ A+   G+D  ++ T +D   +   
Sbjct: 254 ARGPVKSRPLAAVAREMEKLAAAGFREVVLTGIHLGAY---GIDLPQRPTLADACRTALR 310

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
            K + RLR  +    ++S+ L+          P+LHLP+Q+GSD +L++MNRR+    + 
Sbjct: 311 TKEVRRLRLGSLESVELSEDLLSLVRTEPRFAPHLHLPLQAGSDNVLRAMNRRYDTAAFA 370

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
           Q++  +R   P  AIS+D IVGFPGET++DF A +D V  +G+A+   F YS R GTP +
Sbjct: 371 QLLADVRRAVPGAAISTDIIVGFPGETEEDFTAGLDFVRAMGFARMHVFPYSARRGTPAA 430

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419
              +Q+   V+ ER   +Q    E   +++ A +G + EVL E
Sbjct: 431 RRTDQIAPPVRRERAARMQALAEEMAEAYHRAALGTVDEVLFE 473


>gi|229098781|ref|ZP_04229719.1| hypothetical protein bcere0020_40070 [Bacillus cereus Rock3-29]
 gi|228684625|gb|EEL38565.1| hypothetical protein bcere0020_40070 [Bacillus cereus Rock3-29]
          Length = 450

 Score =  219 bits (558), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 140/435 (32%), Positives = 240/435 (55%), Gaps = 27/435 (6%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  +  +F   GYER      +D+ V+NTC +     +K    + R    
Sbjct: 8   TLGCKVNHYETEAIWQLFKQGGYERTEYEKKSDVYVINTCTVTNTGDKKSRQVIRRA--- 64

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               +++  D ++ V GC AQ    EI+   P V++VVG Q   ++   +E  R  ++ +
Sbjct: 65  ----VRQNPDAVICVTGCYAQTSPAEIMA-IPGVDIVVGTQDREKMLGYIEEFRKERQPI 119

Query: 151 DTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           +   ++     +E L   D  Y   R   A L IQEGC+ FCTFC++P+ RG+  SR   
Sbjct: 120 NAVRNIMKTRVYEEL---DVPYFTDR-TRASLKIQEGCNNFCTFCIIPWARGLMRSRDGK 175

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKGLVRLRYTT 267
           +V+ +A++L+D G  EI L G +     G G D +    + LL  + +E+ GL RLR ++
Sbjct: 176 EVIKQAQQLVDAGYKEIVLTGIHTG---GYGEDIKDYNLAGLLRDMEAEVGGLKRLRISS 232

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
                +SD +I+     +V++ +LH+P+QSGS+ +LK M R++T   +++ +DR++   P
Sbjct: 233 IEASQISDEVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALP 292

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
            +AI+SD IVGFPGET+++F  T + + +  +++   F YS R GTP + M +QV E+VK
Sbjct: 293 GLAITSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVK 352

Query: 388 AE---RLLCLQKKLREQQVSFNDACVGQIIEVLIE---KHGKEKGKLVGRSPWLQSVVLN 441
            +   RL+ L  +L ++  S  +   G+++E++ E   K G  +G  VG +     +V  
Sbjct: 353 NDRVHRLIELSNQLAKEYASRFE---GEVLEIIPEEQFKDGDREGLYVGYTDNYLKIVFE 409

Query: 442 SKNHNIGDIIKVRIT 456
                IG ++KV+IT
Sbjct: 410 GSEELIGKLVKVKIT 424


>gi|52081091|ref|YP_079882.1| hypothetical protein BL02101 [Bacillus licheniformis ATCC 14580]
 gi|52786470|ref|YP_092299.1| YqeV [Bacillus licheniformis ATCC 14580]
 gi|319644951|ref|ZP_07999184.1| hypothetical protein HMPREF1012_00217 [Bacillus sp. BT1B_CT2]
 gi|52004302|gb|AAU24244.1| conserved hypothetical protein [Bacillus licheniformis ATCC 14580]
 gi|52348972|gb|AAU41606.1| YqeV [Bacillus licheniformis ATCC 14580]
 gi|317392760|gb|EFV73554.1| hypothetical protein HMPREF1012_00217 [Bacillus sp. BT1B_CT2]
          Length = 451

 Score =  219 bits (558), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 142/434 (32%), Positives = 238/434 (54%), Gaps = 27/434 (6%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  +  +F   GYER      AD+ V+NTC +     +K    + R    
Sbjct: 8   TLGCKVNHYETEAIWQLFKEAGYERKEFESSADVYVINTCTVTNTGDKKSRQVIRRA--- 64

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               I++  D ++ V GC AQ    EI+   P V++VVG Q   ++   +++ +  ++ +
Sbjct: 65  ----IRQNPDAVICVTGCYAQTSPAEIMA-IPGVDIVVGTQDREKMLGYIKQYQEERQPI 119

Query: 151 DTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           +   ++     FE L  V    +R R   A L IQEGC+ FCTFC++P+ RG+  SR   
Sbjct: 120 NGVSNIMKARVFEELD-VPAFTDRTR---ASLKIQEGCNNFCTFCIIPWARGLLRSRDPE 175

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKGLVRLRYTT 267
           +V+ +A++L+D G  EI L G +     G G D +   F+ LL  L S +KGL R+R ++
Sbjct: 176 EVIRQAQQLVDAGYKEIVLTGIHTG---GYGEDMKDYNFAQLLKELDSRVKGLKRIRISS 232

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
                ++D +I+     D ++ +LH+P+QSGS+ +LK M R++T   +   + +++   P
Sbjct: 233 IEASQITDEVIEVLDRSDKIVRHLHIPLQSGSNSVLKRMRRKYTMEFFADRLTKLKKALP 292

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
            +A++SD IVGFPGET+++F  T + + +  +++   F YS R GTP + M  QVDENVK
Sbjct: 293 GLAVTSDVIVGFPGETEEEFMETYNFIKEHKFSELHVFPYSKRTGTPAARMDGQVDENVK 352

Query: 388 AER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK---LVGRSPWLQSVVLN 441
            ER   L+ L  +L ++  S  +   G ++E++ E+   E G+   LVG +     VV  
Sbjct: 353 NERVHKLIALSDQLAKEYASDYE---GDVLEIIPEEPFTETGEGNLLVGYTDNYIKVVFE 409

Query: 442 SKNHNIGDIIKVRI 455
                IG ++KV+I
Sbjct: 410 GSEDLIGQLVKVKI 423


>gi|325262830|ref|ZP_08129566.1| 2-methylthioadenine synthetase [Clostridium sp. D5]
 gi|324031924|gb|EGB93203.1| 2-methylthioadenine synthetase [Clostridium sp. D5]
          Length = 440

 Score =  219 bits (557), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 139/445 (31%), Positives = 245/445 (55%), Gaps = 40/445 (8%)

Query: 33  GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92
           GC++N Y++  M++M    GYE V   + AD+ ++NTC +   A  K    L R R +  
Sbjct: 10  GCKVNAYETEAMQEMLEKAGYEIVPFKEGADIYIINTCTVTNIADRKSRQMLHRARRMNP 69

Query: 93  SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL----------ER 142
           + +       VV AGC  QA+ EE     P +++V+G      L ++L          E 
Sbjct: 70  AAV-------VVAAGCYVQAQ-EEKQEVDPCIDIVIGNNKKQDLLKILQEYENEHAEKEA 121

Query: 143 ARFG----KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
           AR      + ++D +++ E +  RLS   G + R     A++ +Q+GC++FC++C++P+ 
Sbjct: 122 ARPNAVSVREMLDINHTKEYEPLRLSKT-GEHTR-----AYIKVQDGCNQFCSYCIIPFA 175

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC-TFSDLLYSLSEI 257
           RG   SR+ + V++E R+L +NG  E+ L G +++++   G+D E+  +   L+ ++ E+
Sbjct: 176 RGRVRSRAKADVLEEVRRLAENGYQEVVLTGIHLSSY---GIDLEETESLLSLIRAVHEV 232

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
           +G+ R+R  +  PR +++  ++    L+ + P+ HL +QSG D  LK MNRR+++ EY +
Sbjct: 233 RGIRRIRLGSLEPRIITEEFVQELASLEKICPHFHLSLQSGCDTTLKRMNRRYSSEEYFE 292

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
               +R    + A+++D IVGFPGET+++F  +   VDK+ + +   FKYS R GT  + 
Sbjct: 293 KCLLLRKYFDNPALTTDVIVGFPGETEEEFEQSRAFVDKVDFYETHIFKYSKRQGTKAAV 352

Query: 378 MLEQVDENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG--KLVGRS 432
           M  QV E VKA+R   LL L +K R    ++  + +G+ +EVL E+  +  G  K  G +
Sbjct: 353 MENQVPEQVKAQRSDNLLALNEKKRR---AYEKSFIGKEVEVLFEEETEVNGSKKQTGYT 409

Query: 433 PWLQSVVLNSKNHNIGDIIKVRITD 457
                + L++  +    I+KV I +
Sbjct: 410 KEYMKIALDTDENLQNCIVKVEIEN 434


>gi|299144058|ref|ZP_07037138.1| 2-methylthioadenine synthetase [Peptoniphilus sp. oral taxon 386
           str. F0131]
 gi|298518543|gb|EFI42282.1| 2-methylthioadenine synthetase [Peptoniphilus sp. oral taxon 386
           str. F0131]
          Length = 438

 Score =  219 bits (557), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 145/449 (32%), Positives = 244/449 (54%), Gaps = 29/449 (6%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC  N  D+ +M+ +  S+ Y   N+++DA++I++NTC   + A E+    +     +
Sbjct: 8   TLGCSKNEVDTSQMQSILDSKKYIITNNVNDANVIIINTCGFIDAAKEESVDTI-----I 62

Query: 91  KNSRIKEGGDLL-VVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149
           + ++ K+ G    +++AGC+AQ   +E++   P V+ ++G      +  +L+ A  G+R+
Sbjct: 63  EAAKYKDVGKCKKLILAGCLAQRYSKELMEEIPEVDAILGTGNIININNILDSAFNGERI 122

Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209
           V  D ++ DK+     ++G    K  VT ++ I EGC+  CT+C++P  RG   SR +  
Sbjct: 123 VKVD-NINDKY-----IEGIKKSKVSVTEYVKISEGCNNNCTYCIIPKLRGRNRSRKIED 176

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK-CTFSDLLYSLSEIKGLVRLRYTTS 268
           + DE + L++NG  E+ L+ QN   +   G+D  K     DL+  LSEIK L  +R    
Sbjct: 177 IYDEVKYLVNNGTREVILIAQNTTDY---GIDNYKEYKLKDLVKKLSEIKDLKWIRLMYL 233

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
           +P + +D LI    + D L+ Y+ +P+Q  SD IL  MNR+       +++ ++R+  P+
Sbjct: 234 YPDNFTDELIDEFKNNDKLLNYVDIPLQHISDNILSKMNRKTNRNNISELLFKLRNNIPN 293

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           I I + FIVGFPGE + DF    + +++  + +  +F YS    TP  NM  Q+ ENVK 
Sbjct: 294 IIIRTTFIVGFPGEENSDFNELNEFIEENKFDKLGAFIYSREEDTPAFNMNNQIQENVKQ 353

Query: 389 ER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVV-L 440
           +R   L+  Q  + E ++S N   +G I+EVLIE+   +    VGRS    P +  VV +
Sbjct: 354 KRLDILMSTQISISENKLSSN---IGNILEVLIEEIA-DNETYVGRSYMDAPEIDGVVYV 409

Query: 441 NSKNH-NIGDIIKVRITDVKISTLYGELV 468
            SKN+  IG    V+ITD     L G+ +
Sbjct: 410 KSKNNLKIGSFYNVKITDYLEYDLIGDAI 438


>gi|254479764|ref|ZP_05093042.1| MiaB-like tRNA modifying enzyme [Carboxydibrachium pacificum DSM
           12653]
 gi|214034296|gb|EEB75092.1| MiaB-like tRNA modifying enzyme [Carboxydibrachium pacificum DSM
           12653]
          Length = 429

 Score =  219 bits (557), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 132/440 (30%), Positives = 245/440 (55%), Gaps = 21/440 (4%)

Query: 33  GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92
           GC++N Y++  M ++F   GYE V+  + AD+ V+NTC +  ++  K    + + RN KN
Sbjct: 2   GCKVNQYETEVMAELFRKAGYEIVDFDEIADVYVINTCSVTARSDMKSRQMIRKTRN-KN 60

Query: 93  SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL---ERARFGKRV 149
                  D +VV  GC  Q   +E+    P V++V+G +   ++ +L+   E+ +   ++
Sbjct: 61  P------DAIVVAVGCYVQVSPDEVFS-MPEVDIVIGTKDKDKIVDLVKDFEKEKKKTKL 113

Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209
           ++      D +E   I   GY  +    A++ I++GC+++CT+C++PY RG   SR    
Sbjct: 114 IENIMKQRD-YEEFGIT--GYTER--TRAYIKIEDGCNQYCTYCIIPYARGPVRSRKPEN 168

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSH 269
           ++ E +K  ++G  EI L G ++ ++   G D +     D++  + E++G+ R+R ++  
Sbjct: 169 IIKEVKKYAEHGYKEIVLTGIHIASY---GRDLKNIGLLDVIKMVHEVEGIERIRISSIE 225

Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329
           P  +++ ++K   +L  +  + H+ +QSG D  LK M R++TA EY+++++R+R   PD+
Sbjct: 226 PTFLTEDVVKELANLPKMCRHYHVSLQSGCDETLKRMGRKYTASEYKEVVERLRRYIPDV 285

Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAE 389
           AI++D +VGFPGET+++F  +    ++I +A+   FKYS R GT   N   QV   VK E
Sbjct: 286 AITTDIMVGFPGETEEEFEKSYKFAEEICFAKMHVFKYSRRKGTRAYNFPNQVPNKVKEE 345

Query: 390 RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRSPWLQSVVLNSKNHNIG 448
           R   L +  +  +  F +  + + +EVL E+  K+  G + G +    SV +  +  N+ 
Sbjct: 346 RSKKLLQLSKVCERKFKERFLNRTVEVLFEQKVKDLDGYVEGLTDNYLSVAVKGELENLR 405

Query: 449 D-IIKVRITDVKISTLYGEL 467
           + I+ VR+ ++K   L GE+
Sbjct: 406 NRILPVRVKEIKNDLLIGEI 425


>gi|315924411|ref|ZP_07920633.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Pseudoramibacter
           alactolyticus ATCC 23263]
 gi|315622290|gb|EFV02249.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Pseudoramibacter
           alactolyticus ATCC 23263]
          Length = 432

 Score =  219 bits (557), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 139/422 (32%), Positives = 224/422 (53%), Gaps = 21/422 (4%)

Query: 33  GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92
           GC++N +D+  M+  F   GYE V     AD+ V+NTC +      K    L + R    
Sbjct: 11  GCKVNDFDTESMKACFLKVGYEVVPFDTAADVYVVNTCTVTHLGDRKSRQMLRKAR---- 66

Query: 93  SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF----GKR 148
              ++  + ++V AGC AQ   EEI +    V++++G  T +R   + E ARF     ++
Sbjct: 67  ---RKNPNAVIVAAGCYAQVAPEEISKIEE-VDLILG--TAHRNRVVDEVARFQEDHHRQ 120

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           V  +D S +  FE + I +     +R   AFL +Q+GC++FCT+C+VPY RG   SR + 
Sbjct: 121 VYVSDISEQHIFEDMPIAE----HRRHTRAFLKVQDGCNQFCTYCIVPYARGRIRSRRID 176

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
            V +E + L  +G  E  L G ++ ++ GK + G     + L+ ++  I G+ R+R  + 
Sbjct: 177 SVCEEVQLLASDGFKEFVLSGIHIASY-GKDMPGGPDLLT-LIRAVDAIPGVARIRLGSI 234

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
            P  M++  +    ++    P+ HL +QSG D +L+ MNR +T  +Y +I+ RIR     
Sbjct: 235 EPLLMTETFVAGLSEIKSFCPHFHLSLQSGCDAVLRRMNRHYTTEQYFEIVQRIRRYFSK 294

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
            AI++D IVGFPGETD++F+AT D +  + + +   FKYS R GTP ++   QVDE  K 
Sbjct: 295 PAITTDVIVGFPGETDEEFQATKDFMTAVNFYKVHVFKYSKRHGTPAADFEGQVDETTKH 354

Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIG 448
            R   L    REQ+ +F     G+ + VL E+  +   ++ G +P    V + +    IG
Sbjct: 355 RRSQDLIALSREQEQAFLKENAGERMPVLFEQ-LQANHRIEGHTPNYIPVRMFADGKKIG 413

Query: 449 DI 450
            I
Sbjct: 414 QI 415


>gi|299144166|ref|ZP_07037246.1| 2-methylthioadenine synthetase [Peptoniphilus sp. oral taxon 386
           str. F0131]
 gi|298518651|gb|EFI42390.1| 2-methylthioadenine synthetase [Peptoniphilus sp. oral taxon 386
           str. F0131]
          Length = 435

 Score =  218 bits (556), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 131/402 (32%), Positives = 225/402 (55%), Gaps = 20/402 (4%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVN-SMDDADLIVLNTCHIREKAAEKVY 81
           + + F + + GC++N Y+S  M ++F ++GY  V+   + +D+ ++NTC +   +  K  
Sbjct: 1   MKKSFSILTLGCKVNQYESEAMAELFENEGYLNVDFETEVSDIYIINTCTVTNLSDRKSR 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
            F+ R +       ++  + +V V GC +Q   EE+    P V++++G     R+ EL E
Sbjct: 61  QFIRRAK-------RDNPNSIVAVVGCYSQTSPEEV-SSIPGVDIIIGTTERNRIVELCE 112

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
                K+ ++   S++   E  +I     N      A++ +Q+GC+++CT+C++P+ RG 
Sbjct: 113 EFSNNKKQINIVRSLKSDHEFQTINTSKENDM--TRAYIKVQDGCNRYCTYCIIPFARGN 170

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
             SRS+   ++EARKL   G  EI L G ++ ++   G D  K    DL+ +++ I G+ 
Sbjct: 171 IRSRSIEDSMNEARKLAKAGYKEIILTGIHIGSY---GYDIGKERLIDLIENIASIDGIE 227

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R ++  PR ++D  +K     + L  + HL +QSGS++ILK MNR++T  EY      
Sbjct: 228 RIRLSSIEPRTITDDFMKRVVATNKLCDHFHLSLQSGSNKILKEMNRKYTREEYFDKTQI 287

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           IRS  P   +++D IVGFPGETDDDF  + DL+ K+ +++   FKYS R GT  + M  Q
Sbjct: 288 IRSYMPYAGLTTDVIVGFPGETDDDFLDSYDLIKKVEFSKVHVFKYSKRDGTVAAKMKNQ 347

Query: 382 VDENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
           +D N+K +R   LL L  +L ++   F++  +  I  VL E+
Sbjct: 348 IDGNIKNKRSSILLALSDELMKK---FSEKNLNVIKSVLFEE 386


>gi|28211649|ref|NP_782593.1| Fe-S oxidoreductase [Clostridium tetani E88]
 gi|28204091|gb|AAO36530.1| Fe-S oxidoreductase [Clostridium tetani E88]
          Length = 433

 Score =  218 bits (556), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 141/443 (31%), Positives = 237/443 (53%), Gaps = 23/443 (5%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  M + F   GY+ V+    AD+ V+NTC +     +K    + R R +
Sbjct: 7   TLGCRVNQYETEAMTEKFIKSGYDIVDFDKLADVYVINTCTVTNMGDKKSRQMISRARRI 66

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR-- 148
            N       +  + V GC +Q   E++  + P V+VV+G +    + + +E     K   
Sbjct: 67  NN-------NATIAVVGCYSQVAPEKV-SQIPGVDVVIGTRNKGDIVKKVEEYINKKEQV 118

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           ++  D    + FE L+I     + K    AFL IQ+GC+ FC++C++P+ RG   S+   
Sbjct: 119 ILVEDVLKNNVFEELNI----ESYKDKTRAFLKIQDGCNSFCSYCLIPFARGGICSKEPK 174

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
           +V++E +KL+++G  E+TL G  ++ +     D        LL  + +I+G+ R+R  + 
Sbjct: 175 KVIEEIKKLVEHGFKEVTLSGIQISLYGNDFQDN--WDLITLLEEIDKIEGIERVRIGSI 232

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
            P+   D +I    +L  L P+ HL +QSG D  LK MNR +T  EYR I+ ++R     
Sbjct: 233 SPKYFKDDIIDRFSNLKKLCPHFHLSLQSGCDETLKRMNRSYTTEEYRYIVQKLREKIKG 292

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           ++I++D IVGFPGE++++F+ T   +++I  ++   FKYSPR GT  + + EQ+D N+K 
Sbjct: 293 VSITTDIIVGFPGESEEEFKKTHRFLEEIKLSKMHIFKYSPRSGTKAAEIQEQIDGNIKD 352

Query: 389 ER---LLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKGKLVGRSPWLQSVVLNSKN 444
           ER   L+ L KKL +    F +  + Q ++VL  EK   E+    G +P    VV  S  
Sbjct: 353 ERSNSLIELNKKLEK---DFMEKFLEQELQVLYEEKSNLEENSYEGYTPNYIKVVTKSSM 409

Query: 445 HNIGDIIKVRITDVKISTLYGEL 467
           +  G I+   I +VK   + G+L
Sbjct: 410 NLQGKIVNTIIKEVKEDYVLGKL 432


>gi|167039974|ref|YP_001662959.1| MiaB-like tRNA modifying protein [Thermoanaerobacter sp. X514]
 gi|300914064|ref|ZP_07131380.1| MiaB-like tRNA modifying enzyme [Thermoanaerobacter sp. X561]
 gi|307724703|ref|YP_003904454.1| MiaB-like tRNA modifying enzyme [Thermoanaerobacter sp. X513]
 gi|166854214|gb|ABY92623.1| MiaB-like tRNA modifying enzyme [Thermoanaerobacter sp. X514]
 gi|300888999|gb|EFK84145.1| MiaB-like tRNA modifying enzyme [Thermoanaerobacter sp. X561]
 gi|307581764|gb|ADN55163.1| MiaB-like tRNA modifying enzyme [Thermoanaerobacter sp. X513]
          Length = 449

 Score =  218 bits (556), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 138/450 (30%), Positives = 241/450 (53%), Gaps = 37/450 (8%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  M ++F   GYE V+  + AD+ V+NTC +  ++  K    + + R  
Sbjct: 21  TLGCKVNQYETEVMAELFKKAGYEVVDFDEKADVYVINTCTVTNRSDMKSRQEIRKAR-- 78

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
                K+  D LVV  GC  Q   EE     P V++ +G +   ++ EL+E         
Sbjct: 79  -----KKNPDALVVAVGCYVQVSPEEAFS-LPEVDIAIGTKNKDKIVELVE--------- 123

Query: 151 DTDYSVEDKFERLSIVDGGYNRKR----GVTAF-------LTIQEGCDKFCTFCVVPYTR 199
                   K ++LS+V+    +K     GVTA+       + IQ+GC+++CT+C++PY R
Sbjct: 124 ----EFTQKNQKLSVVNNIMTQKEYEEFGVTAYTERTRAYIKIQDGCNQYCTYCIIPYAR 179

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G   SR   +V+DE ++  D+G  EI L G ++ ++   G D +     D++  + EI G
Sbjct: 180 GPVRSRDPKKVLDEVKRFADSGYKEIVLTGIHIASY---GKDLKNIGLLDIIKMIHEIDG 236

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           + R+R ++  P  +++  +K   +L  +  + H+ +QSG D  LK M RR+T  EY+ +I
Sbjct: 237 IKRIRLSSIEPTFLTEEFVKEIANLPKMCRHYHVSLQSGCDETLKRMGRRYTTKEYKSVI 296

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
           DR+R    D+AI++D +VGFPGET+++F  T   V++I +++   FKYS R GT   N  
Sbjct: 297 DRLREYIKDVAITTDVMVGFPGETEEEFLKTYKFVEEICFSKMHVFKYSRRKGTRAYNFP 356

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRSPWLQSV 438
            QV  ++K +R   L +     +  F ++ +G+ +EVL E+  K  +G + G +    S+
Sbjct: 357 NQVANHIKEDRSKKLIELSNRCEYKFMESFIGKTLEVLFEQPVKNMEGYVEGLTDNYLSI 416

Query: 439 VLNSKNHNI-GDIIKVRITDVKISTLYGEL 467
            +      +  +I  V+I ++K + L GE+
Sbjct: 417 AVKGDIKLLRNEIFPVKIKEIKDNFLIGEI 446


>gi|304437669|ref|ZP_07397621.1| MiaB family tRNA modification enzyme [Selenomonas sp. oral taxon
           149 str. 67H29BP]
 gi|304369302|gb|EFM22975.1| MiaB family tRNA modification enzyme [Selenomonas sp. oral taxon
           149 str. 67H29BP]
          Length = 429

 Score =  218 bits (555), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 134/392 (34%), Positives = 211/392 (53%), Gaps = 18/392 (4%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N +++  ME +F ++GYE V   + AD+ V+NTC +   +  K    + R   +
Sbjct: 7   TLGCKVNQFETETMEGLFRARGYEIVPFEERADVYVINTCSVTHLSDRKSRQIIRRAARM 66

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
             +         + VAGC AQ   EE+ R    V VV+G +   R+ + +E A     VV
Sbjct: 67  NPT-------ACIAVAGCYAQVSPEEV-RGLEGVRVVIGTEERARIVDYVEEALRADGVV 118

Query: 151 D--TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           +  TD      FE + +  G  +R R   AFL I++GC  FC+FC++PY RG   SR L+
Sbjct: 119 EEITDVMQARAFEDIPL-HGVPHRTR---AFLKIEDGCQNFCSFCIIPYARGPVKSRPLA 174

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYTT 267
            V  E  KL   G  E+ L G ++ A+   G+D  ++ T +D   +    K + RLR  +
Sbjct: 175 AVAREMEKLAAAGFREVVLTGIHLGAY---GIDLPQRPTLADACRTALRTKEVRRLRLGS 231

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
               ++S+ L+          P+LHLP+Q+GSD +L++MNRR+    + Q++  +R   P
Sbjct: 232 LESVELSEDLLSLVRTEPRFAPHLHLPLQAGSDNVLRAMNRRYDTAAFAQLLADVRRAVP 291

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
             AIS+D IVGFPGET++DF A +D V  +G+A+   F YS R GTP +   +Q+   V+
Sbjct: 292 GAAISTDIIVGFPGETEEDFTAGLDFVRAMGFARMHVFPYSARRGTPAARRTDQIAPPVR 351

Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419
            ER   +Q    E   +++ A +G + EVL E
Sbjct: 352 RERAARMQALAEEMAEAYHRAALGTVDEVLFE 383


>gi|325295204|ref|YP_004281718.1| MiaB-like tRNA modifying enzyme [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325065652|gb|ADY73659.1| MiaB-like tRNA modifying enzyme [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 437

 Score =  218 bits (555), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 136/437 (31%), Positives = 243/437 (55%), Gaps = 20/437 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +R    + GC+MN +++  ME+ F  +GY+ V+  ++AD+ ++NTC +   A  K    L
Sbjct: 2   KRVAFYTLGCKMNFHETAYMEEQFKKRGYKIVDFSEEADIYIVNTCTVTSVADSKSRKAL 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            + ++ +N +       LVV  GC ++   E++ +    V+ + G    +++ +++E+  
Sbjct: 62  RKAKS-RNPKA------LVVATGCYSEVYPEKVEKLEE-VDFITGNVEKFQIVDIVEKRI 113

Query: 145 FGK--RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            GK  R+       E++F  L+I    Y  K    AFL IQ+GC+ FC++C++P  RG  
Sbjct: 114 EGKLPRLYLRGIWKENQFYPLTIRH--YEGK--TRAFLKIQQGCELFCSYCIIPKARGKM 169

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLV 261
           +S    +V+++ ++LI++G  EI L G ++  +   GLD  E  + + L+  + +I GL 
Sbjct: 170 LSEKPEKVLEQVKELINSGYKEIVLTGTHLGGY---GLDLEESLSLAKLIEKIVKIPGLY 226

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           RLR ++  P + SD LI+       + P+LH+P+QSGSDRIL  M RR+T  +Y+ I++R
Sbjct: 227 RLRISSVEPIEFSDELIEVVTSSPKIAPHLHIPLQSGSDRILNLMKRRYTKRDYKTIVER 286

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I S  PDI I +D +VGFPGET++DF  T   + +  +     F YSPR GT    M + 
Sbjct: 287 ILSKNPDICIGTDVMVGFPGETEEDFEETKKFIKEFPFGYIHVFPYSPRKGTVAYKMKDS 346

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           V    K ER   L++  +E+ +++    + + +E L+  + ++   +V    +++ +V +
Sbjct: 347 VSSLEKKERAAILREIGKEKSLNYRKKFLDKELESLVLSNLEDGDSVVLSGNYIRMIVKD 406

Query: 442 SKNHNIGDIIKVRITDV 458
                 G+I+KVR+ +V
Sbjct: 407 --KLKPGEIVKVRLKEV 421


>gi|296333299|ref|ZP_06875752.1| ribosomal protein S12 methylthiotransferase [Bacillus subtilis
           subsp. spizizenii ATCC 6633]
 gi|305675196|ref|YP_003866868.1| ribosomal protein S12 methylthiotransferase [Bacillus subtilis
           subsp. spizizenii str. W23]
 gi|296149497|gb|EFG90393.1| ribosomal protein S12 methylthiotransferase [Bacillus subtilis
           subsp. spizizenii ATCC 6633]
 gi|305413440|gb|ADM38559.1| ribosomal protein S12 methylthiotransferase [Bacillus subtilis
           subsp. spizizenii str. W23]
          Length = 451

 Score =  218 bits (555), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 141/444 (31%), Positives = 241/444 (54%), Gaps = 21/444 (4%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  +  +F   GYER +    AD+ V+NTC +     +K    + R    
Sbjct: 8   TLGCKVNHYETEAIWQLFKEAGYERRDFEQTADVYVINTCTVTNTGDKKSRQVIRRA--- 64

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               I++  D ++ V GC AQ    EI+   P V++VVG Q   ++   +++ R  ++ +
Sbjct: 65  ----IRQNPDGVICVTGCYAQTSPAEIMA-IPGVDIVVGTQDREKMLGYIDQYREERQPI 119

Query: 151 DTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           +   ++     +E L  V    +R R   A L IQEGC+ FCTFC++P+ RG+  SR   
Sbjct: 120 NGVSNIMKARVYEELD-VPAFTDRTR---ASLKIQEGCNNFCTFCIIPWARGLLRSRDPE 175

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKGLVRLRYTT 267
           +V+ +A++L+D G  EI L G +     G G D +   F+ LL  L + ++G+ R+R ++
Sbjct: 176 EVIKQAQQLVDAGYKEIVLTGIHTG---GYGEDMKDYNFAKLLSELDTRVEGVKRIRISS 232

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
                ++D +I+     D ++ +LH+P+QSGS+ +LK M R++T   +   +++++   P
Sbjct: 233 IEASQITDEVIEVLDRSDKIVNHLHIPIQSGSNTVLKRMRRKYTMEFFADRLNKLKKALP 292

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
            +A++SD IVGFPGET+++F  T + + +  +++   F YS R GTP + M +QVDENVK
Sbjct: 293 GLAVTSDVIVGFPGETEEEFMETYNFIKEHKFSELHVFPYSKRTGTPAARMEDQVDENVK 352

Query: 388 AE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
            E   RL+ L  +L ++  S  +  V +II     K  +E+   VG +     VV     
Sbjct: 353 NERVHRLIALSDQLAKEYASQYENEVLEIIPEEAYKETEEENMFVGYTDNYMKVVFKGTE 412

Query: 445 HNIGDIIKVRITDVKISTLYGELV 468
             IG I+KV+I +       G+ V
Sbjct: 413 DMIGKIVKVKILNAGYPYNEGQFV 436


>gi|225389119|ref|ZP_03758843.1| hypothetical protein CLOSTASPAR_02865 [Clostridium asparagiforme
           DSM 15981]
 gi|225044818|gb|EEG55064.1| hypothetical protein CLOSTASPAR_02865 [Clostridium asparagiforme
           DSM 15981]
          Length = 378

 Score =  218 bits (555), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 129/334 (38%), Positives = 196/334 (58%), Gaps = 28/334 (8%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P    + ++GCQMN  DS ++  +  S GY+  +S + AD ++ NTC +RE A ++VY  
Sbjct: 47  PLTCCINTFGCQMNARDSEKLLGILESIGYKATDS-EHADFVLYNTCTVRENANQRVYGR 105

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLE 141
           LG++   K    K+   +++ + GC+ Q     E I      V+++ G    ++L EL+ 
Sbjct: 106 LGQLGAYK----KKNPHMMIALCGCMMQEPEVVERIKTSYHFVDLIFGTHNIFKLAELVS 161

Query: 142 R---ARFGK--RVV-----DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCT 191
                R GK  R V     DTD  VED       V+  Y  K GV        GC+ FC+
Sbjct: 162 TCLDTRQGKKHRTVIDIWKDTDKIVED-----LPVERKYPFKSGVNIIF----GCNNFCS 212

Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLL 251
           +C+VPY RG E SR   +++ E ++L  +GV EI LLGQNVN++ GK L+ E  TF+ LL
Sbjct: 213 YCIVPYVRGRERSRRPEEILKEVKRLAADGVVEIMLLGQNVNSY-GKNLE-EPMTFAQLL 270

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
             + +I G+ R+R+ TSHP+D+SD LI+       +  +LHLP+QSGS RILK MNRR+T
Sbjct: 271 REVEKIDGIERIRFMTSHPKDLSDELIEVMSQSKKICRHLHLPLQSGSSRILKEMNRRYT 330

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDD 345
             +Y  + ++I++  P I++++D IVGFPGET++
Sbjct: 331 KEQYLTLAEKIKAAVPGISLTTDIIVGFPGETEE 364


>gi|295091931|emb|CBK78038.1| SSU ribosomal protein S12P methylthiotransferase [Clostridium cf.
           saccharolyticum K10]
          Length = 446

 Score =  218 bits (554), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 144/452 (31%), Positives = 241/452 (53%), Gaps = 23/452 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC  N+ D+  M  +    GY   +  ++AD+I++NTC     A E+  + + 
Sbjct: 2   KILCVSLGCDKNLVDTEMMLGLLNRDGYTFTDDENEADVILINTCCFINDAKEESVNTIL 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +  LK    K+G    ++V GC+AQ   EEI++  P V+ ++G  TY  +  +L++A  
Sbjct: 62  EMAELK----KKGRCRALIVTGCMAQRYKEEIMQEIPEVDGILGTSTYDEISNVLKKALS 117

Query: 146 GKRVVDTDYSV----EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           G+  +   + +    + K +RL    G Y       AFL I EGCDK+CT+C++P  RG 
Sbjct: 118 GEEHISCFHELTALPDVKAKRLVTTGGHY-------AFLKIAEGCDKYCTYCIIPSLRGP 170

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
             S  + +++++AR+L + GV E+ L+ Q    + G  L G+K    +LL  L+ I GL 
Sbjct: 171 YRSVPMERLIEQARELTEQGVRELILVAQETTLY-GVDLYGKK-MLPELLRQLAAIDGLY 228

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
            +R    +P ++++ LI+     + +  YL +P+Q  SDRILK MNR+ T  E ++ I R
Sbjct: 229 WIRIQYCYPEEITEELIETIRTEEKICHYLDIPIQHASDRILKKMNRKTTMEELKRNIAR 288

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R   PDIA+ +  I GFPGET +D    MD VD++ + +   F YS    TP ++  +Q
Sbjct: 289 LREAIPDIALRTTLIAGFPGETKEDHELLMDFVDEMEFERLGVFAYSAEEDTPAASFPDQ 348

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQS 437
           V + +K ER   L +  +E     ++  VG+I++V+IE    ++   VGR+    P +  
Sbjct: 349 VPQEIKEERRDALMELQQEIAFEKSERMVGRILDVMIEGKVADENAYVGRTYMDAPNVDG 408

Query: 438 VVLNSKNHNI--GDIIKVRITDVKISTLYGEL 467
           ++  + +  +  GD  KVR+T      L GE+
Sbjct: 409 LIFVNTDEPLMSGDFCKVRVTGALDYDLIGEM 440


>gi|321312027|ref|YP_004204314.1| ribosomal protein S12 methylthiotransferase [Bacillus subtilis
           BSn5]
 gi|320018301|gb|ADV93287.1| ribosomal protein S12 methylthiotransferase [Bacillus subtilis
           BSn5]
          Length = 451

 Score =  218 bits (554), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 139/431 (32%), Positives = 237/431 (54%), Gaps = 21/431 (4%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  +  +F   GYER +    AD+ V+NTC +     +K    + R    
Sbjct: 8   TLGCKVNHYETEAIWQLFKEAGYERRDFEQTADVYVINTCTVTNTGDKKSRQVIRRA--- 64

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               I++  D ++ V GC AQ    EI+   P V++VVG Q   ++   +++ R  ++ +
Sbjct: 65  ----IRQNPDGVICVTGCYAQTSPAEIMA-IPGVDIVVGTQDREKMLGYIDQYREERQPI 119

Query: 151 DTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           +   ++     +E L  V    +R R   A L IQEGC+ FCTFC++P+ RG+  SR   
Sbjct: 120 NGVSNIMKARVYEELD-VPAFTDRTR---ASLKIQEGCNNFCTFCIIPWARGLLRSRDPE 175

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKGLVRLRYTT 267
           +V+ +A++L+D G  EI L G +     G G D +   F+ LL  L + ++G+ R+R ++
Sbjct: 176 EVIKQAQQLVDAGYKEIVLTGIHTG---GYGEDMKDYNFAKLLSELDTRVEGVKRIRISS 232

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
                ++D +I+     D ++ +LH+P+QSGS+ +LK M R++T   +   +++++   P
Sbjct: 233 IEASQITDKVIEVLDRSDKIVNHLHIPIQSGSNTVLKRMRRKYTMEFFADRLNKLKKALP 292

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
            +A++SD IVGFPGET+++F  T + + +  +++   F YS R GTP + M +QVDENVK
Sbjct: 293 GLAVTSDVIVGFPGETEEEFMETYNFIKEHKFSELHVFPYSKRTGTPAARMEDQVDENVK 352

Query: 388 AE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
            E   RL+ L  +L ++  S  +  V +II     K  +E+   VG +     VV     
Sbjct: 353 NERVHRLIALSDQLAKEYASQYENEVLEIIPEEAYKETEEENMFVGYTDNYMKVVFKGTE 412

Query: 445 HNIGDIIKVRI 455
             IG I+KV+I
Sbjct: 413 DMIGKIVKVKI 423


>gi|295696216|ref|YP_003589454.1| MiaB-like tRNA modifying enzyme YliG [Bacillus tusciae DSM 2912]
 gi|295411818|gb|ADG06310.1| MiaB-like tRNA modifying enzyme YliG [Bacillus tusciae DSM 2912]
          Length = 442

 Score =  218 bits (554), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 148/450 (32%), Positives = 240/450 (53%), Gaps = 24/450 (5%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA-AEKVYSFLGRI 87
           V + GC+ N  DS  M  +    G++ V    +AD+IV+NTC   ++A AE V + L   
Sbjct: 7   VVTLGCEKNQVDSEVMMGLMERWGFDLVADPQEADVIVVNTCGFVDQAKAESVNTILQMA 66

Query: 88  RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147
           +  +N   K      +VVAGC+AQ   EE++R  P ++ ++G   ++R+PE++E+A  G+
Sbjct: 67  QYKENGHCK-----ALVVAGCLAQRYQEELMREIPEIDGMLGTGEFHRVPEVVEQALAGR 121

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKR---GVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
             +     V        + D    RKR     ++++ I EGCD  CTFC +P  RG   S
Sbjct: 122 HPMRFGNPV-------YLYDEVTPRKRVGLPYSSYVKIAEGCDHGCTFCAIPLMRGKFRS 174

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R +  +V+EAR+L  +GV EI+L+ Q+   + G  L G +    DLL +L+++  L  +R
Sbjct: 175 RPIPSIVEEARRLAADGVREISLIAQDSTQY-GLDLYGRR-RLPDLLKALNDVDELRWIR 232

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
              ++P   +D LI A   L  +  Y+ LP+Q   D IL++M+R     + R++++RIR+
Sbjct: 233 LHYAYPGYFTDELIDAMAGLPKVCKYVDLPLQHSEDEILRAMHRPGRNSQVRKLLERIRT 292

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             P++AI S FIVGFPGET++ F    D V+++ + +   F +S   GTP + M  Q+ E
Sbjct: 293 RIPNVAIRSSFIVGFPGETEEQFLRLADFVEEMAFDRIGVFAFSREEGTPSAAMEGQISE 352

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL-VGRSPWLQS-----V 438
             K  R   L +  R+   +   A VGQ+I+ L+E+    +  + +GRS +        V
Sbjct: 353 AEKERRAAWLMEVGRKASAARGAARVGQVIDCLLERQDDRRPDIWIGRSEYDAPEIDGQV 412

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            ++      G+ +KVRIT      L GE V
Sbjct: 413 FVSGAGGRPGEFVKVRITHSFDFDLAGEGV 442


>gi|283797856|ref|ZP_06347009.1| RNA modification enzyme, MiaB family [Clostridium sp. M62/1]
 gi|291074547|gb|EFE11911.1| RNA modification enzyme, MiaB family [Clostridium sp. M62/1]
          Length = 446

 Score =  218 bits (554), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 144/452 (31%), Positives = 241/452 (53%), Gaps = 23/452 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC  N+ D+  M  +    GY   +  ++AD+I++NTC     A E+  + + 
Sbjct: 2   KILCVSLGCDKNLVDTEMMLGLLNRDGYTFTDDENEADVILINTCCFINDAKEESVNTIL 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +  LK    K+G    ++V GC+AQ   EEI++  P V+ ++G  TY  +  +L++A  
Sbjct: 62  EMAELK----KKGRCRALIVTGCMAQRYKEEIMQEIPEVDGILGTSTYDEISNVLKKALS 117

Query: 146 GKRVVDTDYSV----EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           G+  +   + +    + K +RL    G Y       AFL I EGCDK+CT+C++P  RG 
Sbjct: 118 GEEHISCFHELTALPDVKAKRLVTTGGHY-------AFLKIAEGCDKYCTYCIIPSLRGP 170

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
             S  + +++++AR+L + GV E+ L+ Q    + G  L G+K    +LL  L+ I GL 
Sbjct: 171 YRSVPMERLIEQARELTEQGVRELILVAQETTLY-GVDLYGKK-MLPELLRQLAAIDGLY 228

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
            +R    +P ++++ LI+     + +  YL +P+Q  SDRILK MNR+ T  E ++ I R
Sbjct: 229 WIRIQYCYPEEITEELIETIRTEEKICHYLDIPIQHASDRILKRMNRKTTMEELKRNIAR 288

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R   PDIA+ +  I GFPGET +D    MD VD++ + +   F YS    TP ++  +Q
Sbjct: 289 LREAIPDIALRTTLIAGFPGETKEDHELLMDFVDEMEFERLGVFAYSAEEDTPAASFPDQ 348

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQS 437
           V + +K ER   L +  +E     ++  VG+I++V+IE    ++   VGR+    P +  
Sbjct: 349 VPQEIKEERRDALMELQQEIAFEKSERMVGRILDVMIEGKVADENAYVGRTYMDAPNVDG 408

Query: 438 VVLNSKNHNI--GDIIKVRITDVKISTLYGEL 467
           ++  + +  +  GD  KVR+T      L GE+
Sbjct: 409 LIFVNTDEPLMSGDFCKVRVTGALDYDLIGEM 440


>gi|20807443|ref|NP_622614.1| 2-methylthioadenine synthetase [Thermoanaerobacter tengcongensis
           MB4]
 gi|20515967|gb|AAM24218.1| 2-methylthioadenine synthetase [Thermoanaerobacter tengcongensis
           MB4]
          Length = 437

 Score =  218 bits (554), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 132/442 (29%), Positives = 245/442 (55%), Gaps = 21/442 (4%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  M ++F   GYE V+  + AD+ V+NTC +  ++  K    + + RN 
Sbjct: 8   TLGCKVNQYETEVMAELFRKAGYEIVDFDEIADVYVINTCSVTARSDMKSRQMIRKTRN- 66

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL---ERARFGK 147
           KN       D +VV  GC  Q   +E+    P V++V+G +   ++ +L+   E  +   
Sbjct: 67  KNP------DAIVVAVGCYVQVSPDEVFS-MPEVDIVIGTKDKDKIVDLVKDFENEKKKT 119

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
           ++++      D +E   I   GY  +    A++ I++GC+++CT+C++PY RG   SR  
Sbjct: 120 KLIENIMKQRD-YEEFGIT--GYTER--TRAYIKIEDGCNQYCTYCIIPYARGPVRSRKP 174

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
             ++ E +K  ++G  EI L G ++ ++   G D +     D++  + E++G+ R+R ++
Sbjct: 175 ENIIKEVKKYAEHGYKEIVLTGIHIASY---GRDLKNIGLLDVIKMVHEVEGIERIRISS 231

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
             P  +++ ++K   +L  +  + H+ +QSG D  LK M R++TA EY+++++R+R   P
Sbjct: 232 IEPTFLTEDVVKELANLPKMCRHYHVSLQSGCDETLKRMGRKYTASEYKEVVERLRRYIP 291

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
           D+AI++D +VGFPGET+++F  +    ++I +A+   FKYS R GT   N   QV   VK
Sbjct: 292 DVAITTDIMVGFPGETEEEFEKSYKFAEEICFAKMHVFKYSRRKGTRAYNFPNQVPNKVK 351

Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRSPWLQSVVLNSKNHN 446
            ER   L +  +  +  F +  + + +EVL E+  K+  G + G +    SV +  +  N
Sbjct: 352 EERSKKLLQLSKVCERKFKERFLNRTVEVLFEQKVKDLDGYVEGLTDNYLSVAVKGELEN 411

Query: 447 IGD-IIKVRITDVKISTLYGEL 467
           + + I+ VR+ ++K   L GE+
Sbjct: 412 LRNRILPVRVKEIKNDLLIGEI 433


>gi|167758331|ref|ZP_02430458.1| hypothetical protein CLOSCI_00670 [Clostridium scindens ATCC 35704]
 gi|167664228|gb|EDS08358.1| hypothetical protein CLOSCI_00670 [Clostridium scindens ATCC 35704]
          Length = 449

 Score =  218 bits (554), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 154/454 (33%), Positives = 242/454 (53%), Gaps = 36/454 (7%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC-HIREKAAEKVYSFLGRIRN 89
           S GC  N+ DS  M  +  ++GY  V+    AD+I++NTC  I +   E + + L   + 
Sbjct: 15  SLGCDKNLVDSEVMLGLLAAKGYRMVDDEMQADIIIVNTCCFIHDAKEESIQTILEMAQY 74

Query: 90  LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149
             + R+K     ++VV GC+AQ   +EIL   P V+ V+G  +Y ++ E +E A  GK  
Sbjct: 75  KTDGRLK-----VLVVTGCLAQRYQQEILDEIPEVDAVLGTTSYDKIVEAVEEALAGKGH 129

Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVT-----AFLTIQEGCDKFCTFCVVPYTRGIEIS 204
           V+    VED  + L +VD     +R VT     A+L I EGCDK CT+C++P  RG   S
Sbjct: 130 VE----VED-IDALPLVD----TRRLVTTGGHFAYLKIAEGCDKHCTYCIIPKIRGDFRS 180

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
             + ++V EA +L + GV E+ L+ Q    + GK L GEK +   LL  L  I G+  +R
Sbjct: 181 VPMERLVKEAGELAEQGVKELILVAQETTLY-GKDLYGEK-SLHRLLRELCRISGIRWIR 238

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
               +P ++ + LI+   +   +  YL LP+Q  +D ILK M RR +  +  +II R+R 
Sbjct: 239 LLYCYPEEIDENLIQIMKEEKKICHYLDLPIQHANDDILKRMGRRTSKNQLEEIIGRLRR 298

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             PDIA+ +  I GFPGET +     M+ VD++ + +   F YSP   TP + M +QV E
Sbjct: 299 EIPDIALRTTLITGFPGETKEQHEELMEFVDEMEFDRLGVFTYSPEEDTPAAGMPDQVPE 358

Query: 385 NVKAERLLCLQKKLRE--QQVSFN--DACVGQIIEVLIEKHGKEKGKLVGRS----PWLQ 436
            VK ER    Q ++ E  Q++ F+  +A +G+ + V+IE    ++   VGR+    P + 
Sbjct: 359 EVKEER----QAEIMELQQEIVFDQAEAMIGREVLVMIEGKVADENAYVGRTYKDAPNVD 414

Query: 437 SVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468
            ++  +    +  GD  +V++T      L GEL+
Sbjct: 415 GLIFINTEAELMSGDFARVKVTGALEYDLIGELM 448


>gi|16079597|ref|NP_390421.1| ribosomal protein S12 methylthiotransferase [Bacillus subtilis
           subsp. subtilis str. 168]
 gi|221310468|ref|ZP_03592315.1| hypothetical protein Bsubs1_13906 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221314791|ref|ZP_03596596.1| hypothetical protein BsubsN3_13822 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221319714|ref|ZP_03601008.1| hypothetical protein BsubsJ_13743 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221323991|ref|ZP_03605285.1| hypothetical protein BsubsS_13877 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|1730990|sp|P54462|YQEV_BACSU RecName: Full=Putative methylthiotransferase yqeV
 gi|1303812|dbj|BAA12468.1| YqeV [Bacillus subtilis]
 gi|1890061|dbj|BAA12080.1| YqeV [Bacillus subtilis]
 gi|2634989|emb|CAB14485.1| ribosomal protein S12 methylthiotransferase [Bacillus subtilis
           subsp. subtilis str. 168]
 gi|291484990|dbj|BAI86065.1| hypothetical protein BSNT_03787 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 451

 Score =  217 bits (553), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 139/431 (32%), Positives = 237/431 (54%), Gaps = 21/431 (4%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  +  +F   GYER +    AD+ V+NTC +     +K    + R    
Sbjct: 8   TLGCKVNHYETEAIWQLFKEAGYERRDFEQTADVYVINTCTVTNTGDKKSRQVIRRA--- 64

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               I++  D ++ V GC AQ    EI+   P V++VVG Q   ++   +++ R  ++ +
Sbjct: 65  ----IRQNPDGVICVTGCYAQTSPAEIMA-IPGVDIVVGTQDREKMLGYIDQYREERQPI 119

Query: 151 DTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           +   ++     +E L  V    +R R   A L IQEGC+ FCTFC++P+ RG+  SR   
Sbjct: 120 NGVSNIMKARVYEELD-VPAFTDRTR---ASLKIQEGCNNFCTFCIIPWARGLLRSRDPE 175

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKGLVRLRYTT 267
           +V+ +A++L+D G  EI L G +     G G D +   F+ LL  L + ++G+ R+R ++
Sbjct: 176 EVIKQAQQLVDAGYKEIVLTGIHTG---GYGEDMKDYNFAKLLSELDTRVEGVKRIRISS 232

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
                ++D +I+     D ++ +LH+P+QSGS+ +LK M R++T   +   +++++   P
Sbjct: 233 IEASQITDEVIEVLDRSDKIVNHLHIPIQSGSNTVLKRMRRKYTMEFFADRLNKLKKALP 292

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
            +A++SD IVGFPGET+++F  T + + +  +++   F YS R GTP + M +QVDENVK
Sbjct: 293 GLAVTSDVIVGFPGETEEEFMETYNFIKEHKFSELHVFPYSKRTGTPAARMEDQVDENVK 352

Query: 388 AE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
            E   RL+ L  +L ++  S  +  V +II     K  +E+   VG +     VV     
Sbjct: 353 NERVHRLIALSDQLAKEYASQYENEVLEIIPEEAFKETEEENMFVGYTDNYMKVVFKGTE 412

Query: 445 HNIGDIIKVRI 455
             IG I+KV+I
Sbjct: 413 DMIGKIVKVKI 423


>gi|150015722|ref|YP_001307976.1| MiaB-like tRNA modifying enzyme [Clostridium beijerinckii NCIMB
           8052]
 gi|149902187|gb|ABR33020.1| MiaB-like tRNA modifying enzyme [Clostridium beijerinckii NCIMB
           8052]
          Length = 432

 Score =  217 bits (553), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 140/442 (31%), Positives = 238/442 (53%), Gaps = 18/442 (4%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  M + F  +GYE  +    AD+ V+NTC +   + +K    + R R  
Sbjct: 5   TLGCRVNHYETEAMAEKFIREGYEVTDFEGFADVYVINTCSVTNMSDKKSRQIISRAR-- 62

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR-- 148
                +   + ++   GC +Q   EE+ +    V+VV+G +    +   + +A+  ++  
Sbjct: 63  -----RRNENAIIAAVGCYSQVAPEEVSKIQG-VDVVLGTRNKGDIVYYVNKAKDEQKPQ 116

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           ++  +     +FE L+I +  Y  K    AFL IQ+GC++FC +C++PYTRG   S+   
Sbjct: 117 LMVGEVLKNKQFEELNIEE--YQDK--TRAFLKIQDGCNRFCAYCLIPYTRGTTCSKDPQ 172

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
           +V+DE + L ++G  EI L G +  ++ G  LDG   T   LL  + ++ G+ R+R  + 
Sbjct: 173 KVLDEIKNLSEHGFKEIILSGIHTASY-GVDLDG-NVTLITLLEEIEKLDGIERVRIGSI 230

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
            P   +D +I+    +  L P  HL +QSG D  LK MNRR+TA EY   ++RIR    D
Sbjct: 231 EPSFFTDEVIEKMKKMKKLCPQFHLSLQSGCDATLKRMNRRYTAKEYEDAVNRIRENLKD 290

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
            +I++D IVGFPGETD++F  T + + +I   +   FK+SPR GT  S+M  Q+D NVK 
Sbjct: 291 ASITTDVIVGFPGETDEEFNETYEYLKRIKLTKTHIFKFSPRKGTKASDMPNQIDGNVKD 350

Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRS-PWLQSVVLNSKNHN 446
           +R   L +   + +  F+ + VG+ ++VL+E+    K G   G +  +++  + N     
Sbjct: 351 KRSKALIELNAKNEGDFSKSLVGRELDVLVEQEVSNKPGVFEGYTRNYVKVEIPNGSRDM 410

Query: 447 IGDIIKVRITDVKISTLYGELV 468
           IG II  +I       + G+++
Sbjct: 411 IGKIILCKIMASDAEYVVGKII 432


>gi|325847803|ref|ZP_08170025.1| tRNA methylthiotransferase YqeV [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
 gi|325480821|gb|EGC83874.1| tRNA methylthiotransferase YqeV [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
          Length = 432

 Score =  217 bits (553), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 138/443 (31%), Positives = 235/443 (53%), Gaps = 28/443 (6%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + + F +K+ GC++N Y+S  +E++F  +G+E+    D+AD+ V+NTC +   +  K   
Sbjct: 1   MSKTFNIKTLGCKVNQYESEAIEELFKKRGFEK--KEDNADIYVINTCTVTNMSDRKSRQ 58

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            + + R       KE  D ++ V GC +Q +G+E+ +    V++V+G +    + +L E 
Sbjct: 59  TISKAR-------KENKDAIIAVIGCYSQVKGDEV-KEIEGVDIVLGSRNKEEVVDLCEN 110

Query: 143 ARFGKRVVDT----DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
             F    V T    ++ + +  E L I     N+     A++ IQ+GC+ +C++C++PY 
Sbjct: 111 --FINDHVKTKDVEEFKIGEAIEDLEIS----NQADMTRAYIKIQDGCNMYCSYCLIPYA 164

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258
           RG   SR L  ++DEA++L DNG  EI L G +V ++ GK LD    +  D++  +S+I 
Sbjct: 165 RGNIASRDLVSIIDEAKRLRDNGFKEIVLTGIHVASY-GKDLDL-NISLIDVIEHISKID 222

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           G+ R+R ++  PR +    ++   D      + HL +QSGSD +LK MNR++    +++ 
Sbjct: 223 GIERIRLSSMEPRHIDREFLQRMKDTKKACDHFHLSLQSGSDDVLKLMNRKYDTKIFKEK 282

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           +D IR   P+  +++D IVGFP E++ +   T D V  I +++   FKYS R GT  ++M
Sbjct: 283 VDLIREYFPNAGLTTDIIVGFPNESEKNHEQTKDFVRDIKFSKTHLFKYSKRDGTKAASM 342

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSV 438
            +QVD N K  R   L    ++    F D  +G+ + VL E   +  G   G S     V
Sbjct: 343 KDQVDGNTKKRRSKELSVIEKKNSHEFLDNQIGKTLSVLFETKTELDGYKSGYSTNYLRV 402

Query: 439 VLNSKNHNIGDIIKVRITDVKIS 461
                 H   D+    I D+KI+
Sbjct: 403 ------HTKDDVEINEIKDIKIT 419


>gi|257066655|ref|YP_003152911.1| RNA modification enzyme, MiaB family [Anaerococcus prevotii DSM
           20548]
 gi|256798535|gb|ACV29190.1| RNA modification enzyme, MiaB family [Anaerococcus prevotii DSM
           20548]
          Length = 431

 Score =  217 bits (553), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 140/443 (31%), Positives = 241/443 (54%), Gaps = 23/443 (5%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           F + + GC++N Y+S  +E++F ++GYE+    ++AD+ V+NTC +   +  K    + R
Sbjct: 5   FNIITLGCKVNQYESEAVEEIFQAKGYEK--KQNNADIYVINTCTVTNMSDRKSRQMISR 62

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
            R       ++  + ++ V GC +Q + EE+      V+VV+G +    + +L E     
Sbjct: 63  AR-------RDNPEAVIAVMGCYSQVKPEEVAAIEG-VDVVLGSRNKEEVVDLCENVLQN 114

Query: 147 KRVVDT--DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
           K+V+D    +S     E L I     N++    A++ IQ+GC+ +C++C++PY RG   S
Sbjct: 115 KKVIDKVLSFSETKTIEELEI----SNQEAMTRAYMKIQDGCNMYCSYCLIPYARGNIAS 170

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R +  +  EA++L  NG  EI L G +V ++ GK L     +  D++  +S+  G+ R+R
Sbjct: 171 RDMDSIKKEAKRLAQNGYKEIVLTGIHVASY-GKDLRN-GTSLIDVIEEVSKTDGIERIR 228

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
            ++  PR ++   ++     +    + HL +QSGSD ILK+MNR++    +++ +D IR 
Sbjct: 229 LSSMEPRHITRDFLERMKATEKACDHFHLSLQSGSDEILKAMNRKYDTKIFKEKVDLIRE 288

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           V P+  +++D IVGFP ET+ +   T D V +I +A+   FKYS R GT  ++M  +V+ 
Sbjct: 289 VFPNAGLTTDIIVGFPTETEKNHEETKDFVKEIKFAKTHLFKYSKRDGTKAASMKPEVNG 348

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
           N+K ERL  L+      +++F    +G+ + VL E     +G   G S     V  N K+
Sbjct: 349 NIKKERLKELEAIEEVNRLNFLKNQIGKTLSVLFESKSDMEGYKSGYSTNYLRV--NVKD 406

Query: 445 HNIGD--IIKVRITDVKISTLYG 465
            +IGD  I  V IT++K   L G
Sbjct: 407 -DIGDNEIRDVLITEIKNDELIG 428


>gi|238917088|ref|YP_002930605.1| 2-alkenal reductase [Eubacterium eligens ATCC 27750]
 gi|238872448|gb|ACR72158.1| 2-alkenal reductase [Eubacterium eligens ATCC 27750]
          Length = 446

 Score =  217 bits (553), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 132/415 (31%), Positives = 226/415 (54%), Gaps = 24/415 (5%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDD--ADLIVLNTCHIREKAAEKVYS 82
           ++  + S GC++N Y++  ME M   +GYE V   +D  AD+ ++NTC +   A  K   
Sbjct: 6   KKVAIHSLGCKVNSYEAESMEIMLRDEGYEIVPFSEDVQADIYIINTCSVTNIADRKSRQ 65

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            L + + +         + +VV AGC  QA+ + + ++   V++++G      + E L  
Sbjct: 66  MLHKAKKM-------NPEAVVVAAGCYVQADPDGV-KKDECVDIILGNNMKISIVEALND 117

Query: 143 ARFGKRVVDTDYSVEDKF---ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
              G         + DK+   E L I   G + +    A++ IQ+GC++FC++C++PY R
Sbjct: 118 YFGGADKTSYLVDINDKYQEYESLKINQTGEHTR----AYIKIQDGCNQFCSYCIIPYVR 173

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G   SR    +V+E + L   GV E+ L G +++++   G D E  +  +L+ ++ EI+G
Sbjct: 174 GRVRSRKPEDIVNEVKTLAATGVKEVVLTGIHISSY---GTDLENISLIELIEAIHEIEG 230

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           + R+R  +  PR +++   K    L+ + P+ HL +QSG D+ LK+MNR++   EY +  
Sbjct: 231 IKRIRLGSLEPRIITEEFAKRIAGLEKICPHFHLSLQSGCDKTLKAMNRKYNTEEYYEGC 290

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            ++R V  + AI++D IVGFPGET++DF  T   ++K+ + +   FKYS R GT    M 
Sbjct: 291 VKLREVFENPAITTDVIVGFPGETEEDFLETRKFLEKVHFYEMHIFKYSRRKGTVADKMK 350

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPW 434
           EQV + VK+ER   L    + Q + +    +G+ +EVLIE    E  ++ GRS +
Sbjct: 351 EQVADTVKSERSAVLLALEKAQSLEYRKMYIGKRLEVLIE----ELTEIDGRSYY 401


>gi|307153171|ref|YP_003888555.1| RNA modification enzyme, MiaB family [Cyanothece sp. PCC 7822]
 gi|306983399|gb|ADN15280.1| RNA modification enzyme, MiaB family [Cyanothece sp. PCC 7822]
          Length = 436

 Score =  217 bits (552), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 145/453 (32%), Positives = 234/453 (51%), Gaps = 38/453 (8%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           +   GC+ N  DS  M  +    GY  V+  D AD +++NTC           SF+G  R
Sbjct: 9   ISHLGCEKNRIDSEHMLGLLAQAGY-GVDDPDLADYVIVNTC-----------SFIGEAR 56

Query: 89  NLKNSRIKEGGDL--LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
                 + E  +    ++++GC+AQ   +E+L   P    +VG   Y+++ E++ER   G
Sbjct: 57  QESVRTLVELAEANKKIIISGCLAQHFQDELLCELPEAVALVGTGDYHKIVEVIERVESG 116

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVT---AFLTIQEGCDKFCTFCVVPYTRGIEI 203
           +RV   + S E  +    I D    R R  T   A+L + EGCD  C+FC++P+ RG + 
Sbjct: 117 QRV--KEISPEPTY----IADENLPRYRTTTEGVAYLRVAEGCDYRCSFCIIPHLRGNQR 170

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK-GLVR 262
           SRS+  +V EA +L   GV EI L+ Q    + G  L GE    ++LL SL ++    +R
Sbjct: 171 SRSIESIVAEAEQLAAQGVQEIILISQITTNY-GLDLYGEP-KLAELLRSLGKVDVPWIR 228

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           + Y  ++P  ++  +IKA      ++PYL LP+Q     IL++MNR         II+RI
Sbjct: 229 IHY--AYPTGLTPKVIKAIQQTPNVLPYLDLPLQHSHPEILRAMNRPWQGKVNDSIIERI 286

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           +   P+  + + FIVGFPGETD+ F   ++ V +  +     F +SP   TP   M  Q+
Sbjct: 287 KDTIPEAILRTTFIVGFPGETDEHFAHLVEFVKRHQFDHVGVFTFSPEEETPAYRMANQI 346

Query: 383 DENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWL 435
            + +  +R   ++ +Q+ +  Q+   N AC+G  ++VLIE+     G+L+GRS    P +
Sbjct: 347 PQEIMEQRRDTIMQIQQPISLQK---NCACIGDTVDVLIEQENPHTGQLIGRSARFAPEV 403

Query: 436 QSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
             +V      ++G ++ V+I D  I  LYGE+V
Sbjct: 404 DGLVYVEGEASLGSLVSVKIKDADIYDLYGEVV 436


>gi|187778464|ref|ZP_02994937.1| hypothetical protein CLOSPO_02058 [Clostridium sporogenes ATCC
           15579]
 gi|187772089|gb|EDU35891.1| hypothetical protein CLOSPO_02058 [Clostridium sporogenes ATCC
           15579]
          Length = 432

 Score =  217 bits (552), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 139/442 (31%), Positives = 241/442 (54%), Gaps = 22/442 (4%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++NVY++  M + F  QGYE V+  + AD+ V+NTC +     +K    + R R  
Sbjct: 7   TLGCRVNVYETEAMTEKFIKQGYEVVDFNEVADVYVINTCTVTNMGDKKSRQMISRGR-- 64

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK-RV 149
                ++    ++ V GC +Q   EE+ +    V+VV+G +    +   + RA   K +V
Sbjct: 65  -----RQNSKAIIAVVGCYSQIAPEEVAKIEG-VDVVLGTRNKGDIVYWINRAMEEKNQV 118

Query: 150 VDTDYSVEDK-FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           ++    + +K FE L+I +  Y  K    AFL IQ+GC++FC++C++P+ RG   S+   
Sbjct: 119 IEVKDVLRNKEFEELNIEE--YRDK--TRAFLKIQDGCNRFCSYCLIPFARGAVCSKKPE 174

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
           +V++E RKL  +G  EI L G ++ ++ G  L+G K   + +L  + +++G+ R+R  + 
Sbjct: 175 KVMEEVRKLSKHGFKEIILSGIDIASY-GFDLEG-KYNLTSILEDIDKVEGIERIRIGSI 232

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
            P   ++  I     L    P+ HL +QSG +  LK MNR++T  +Y++I+  +R+    
Sbjct: 233 DPTFFTEEEIIRISKLKKFCPHFHLSLQSGCNETLKRMNRKYTVEQYKEIVYNLRTNIEA 292

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           ++I++D IVGFPGET+++F  T + +  I  ++   FK+SPR  T    M  QVD N+K 
Sbjct: 293 VSITTDIIVGFPGETEEEFNKTYEFLKDIKLSKMHVFKFSPRKATRAEKMENQVDGNIKE 352

Query: 389 ER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445
           ER   ++ L K L ++   F +  + + + VL E+  KEKG   G +P    +   S   
Sbjct: 353 ERSNKIINLDKALEKE---FMNKFIEKEMLVLYEQETKEKGIFEGYTPNYIKIYAKSLKD 409

Query: 446 NIGDIIKVRITDVKISTLYGEL 467
             G+II  ++ +V    + GE+
Sbjct: 410 ITGEIISTKLKEVSKDFIKGEI 431


>gi|317500459|ref|ZP_07958683.1| MiaB family RNA modification enzyme [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|316898214|gb|EFV20261.1| MiaB family RNA modification enzyme [Lachnospiraceae bacterium
           8_1_57FAA]
          Length = 440

 Score =  217 bits (552), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 150/452 (33%), Positives = 240/452 (53%), Gaps = 32/452 (7%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC-HIREKAAEKVYSFLGRIRN 89
           S GC  N+ D+  M  +  S+GYE  +    AD+IV+NTC  I +   E + + L     
Sbjct: 7   SLGCDKNLVDTEVMLGLLASRGYEMTDDERQADIIVINTCCFIHDAKEESIQNILEMAEY 66

Query: 90  LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149
            K+ ++K     +++V GC+AQ   +EIL   P V+ V+G   Y ++ + ++RA  G++ 
Sbjct: 67  KKSGQVK-----VLIVTGCLAQRYRQEILDEIPEVDEVLGTTAYDKILDAVDRALEGEQG 121

Query: 150 V---DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           +   D +       +RL    G +       A+L I EGCDK CT+C++P  RG   S  
Sbjct: 122 IILSDLNALPVSGAKRLVTTGGHF-------AYLKIAEGCDKHCTYCIIPKIRGNFRSVP 174

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
           + +++ EA++L + GV E+ L+ Q    + GK L GEKC    L+  L +I G+  +R  
Sbjct: 175 MERLIKEAKELAEQGVKELILVAQETTLY-GKDLYGEKC-LHRLVEELCKIAGIRWIRIL 232

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
             +P +++D LI+       +  YL LP+Q  SD ILK M RR +  E   I+ ++R   
Sbjct: 233 YCYPEEITDELIEVIKKEPKVCHYLDLPIQHASDSILKRMGRRTSKQELTDIVKKLRKEI 292

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           PDI + +  I GFPGET+D     M  VD++ + +   F YSP   TP + M +Q+ E V
Sbjct: 293 PDICLRTTLITGFPGETEDQHEELMQFVDEMEFDRLGVFTYSPEEDTPAAVMPDQIAEEV 352

Query: 387 KAERLLCLQKKLRE--QQVSFNDA--CVGQIIEVLIEKHGKEKGKLVGRS----PWLQSV 438
           K ER    Q  L E  Q+++F++A   +G+ + V+IE    ++   VGR+    P +  +
Sbjct: 353 KEER----QADLMELQQEIAFDNAENMIGREMLVMIEGKVADENAYVGRTYRDAPNVDGL 408

Query: 439 V-LNSKNHNI-GDIIKVRITDVKISTLYGELV 468
           + +N++   I GD  KV+IT      L GEL+
Sbjct: 409 IFINTEEELISGDFAKVKITGALEYDLIGELL 440


>gi|212697105|ref|ZP_03305233.1| hypothetical protein ANHYDRO_01670 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212675880|gb|EEB35487.1| hypothetical protein ANHYDRO_01670 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 432

 Score =  217 bits (552), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 137/443 (30%), Positives = 234/443 (52%), Gaps = 28/443 (6%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + + F +K+ GC++N Y+S  +E++F  +G+E+    D+AD+ V+NTC +   +  K   
Sbjct: 1   MSKTFNIKTLGCKVNQYESEAIEELFKKRGFEK--KEDNADIYVINTCTVTNMSDRKSRQ 58

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            + + R       KE  D ++ V GC +Q +G+E+ +    V++V+G +    + +L E 
Sbjct: 59  TISKAR-------KENKDAIIAVIGCYSQVKGDEV-KEIEGVDIVLGSRNKEEVVDLCEN 110

Query: 143 ARFGKRVVDT----DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
             F    V T    ++ + +  E L I     N+     +++ IQ+GC+ +C++C++PY 
Sbjct: 111 --FISDHVKTKDVEEFKIGEAIEDLEIS----NQADMTRSYIKIQDGCNMYCSYCLIPYA 164

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258
           RG   SR L  ++DEA++L DNG  EI L G +V ++ GK LD    +  D++  +++I 
Sbjct: 165 RGNIASRDLVSIIDEAKRLRDNGFKEIVLTGIHVASY-GKDLDLN-ISLIDVIEHIAKID 222

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           G+ R+R ++  PR +    ++   D      + HL +QSGSD +LK MNR++    +++ 
Sbjct: 223 GIERIRLSSMEPRHIDREFLQRMKDTKKACDHFHLSLQSGSDDVLKLMNRKYDTKIFKEK 282

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           +D IR   P+  +++D IVGFP E++ +   T D V  I +++   FKYS R GT  +NM
Sbjct: 283 VDLIREYFPNAGLTTDIIVGFPNESEKNHEQTKDFVRNIKFSKTHLFKYSKRDGTKAANM 342

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSV 438
             QVD N K  R   L    ++    F D  +G+ + VL E   +  G   G S     V
Sbjct: 343 KNQVDGNTKKRRSKELSVIEKKNSHEFLDKQIGKTLSVLFETKTELDGYKSGYSTNYLRV 402

Query: 439 VLNSKNHNIGDIIKVRITDVKIS 461
                 H   D+    I D+KI+
Sbjct: 403 ------HTKDDVGINEIKDIKIT 419


>gi|284048079|ref|YP_003398418.1| RNA modification enzyme, MiaB family [Acidaminococcus fermentans
           DSM 20731]
 gi|283952300|gb|ADB47103.1| RNA modification enzyme, MiaB family [Acidaminococcus fermentans
           DSM 20731]
          Length = 437

 Score =  217 bits (552), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 139/445 (31%), Positives = 233/445 (52%), Gaps = 22/445 (4%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N  D+  ME +F   G++ V+  + AD+ ++NTC +      K    + R    
Sbjct: 8   TLGCKVNQSDTASMEKLFRDAGFQIVDFEEPADICLINTCVVTNMGQSKSRKIIHRA--- 64

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
                +     L+VV GC  Q   +E++     V++++G Q   ++ EL+ R R G+   
Sbjct: 65  ----ARRDPKPLIVVTGCYPQTSPDEVVHIDG-VDLIIGNQDRSKVVELV-RERLGESPD 118

Query: 151 DT------DYSVEDKFERL-SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           +       D  V  +FE L + VD   NR     AFL IQEGCD++C +C++PY RG   
Sbjct: 119 EAPINAVHDLPVGREFEELDAAVDASRNR-----AFLKIQEGCDQYCAYCIIPYARGHLR 173

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SRSL  + +E  KL      EI L+G ++  + GK + G       +  +LS    + RL
Sbjct: 174 SRSLDNIREEVAKLTAEQYKEIVLIGIHLGCY-GKEIPGGPHLSDAVKAALSAEPQVPRL 232

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R  +    ++ D L+        L  +LHLP+Q+G D  L  M+R +   ++ Q++++IR
Sbjct: 233 RLGSLESVEVEDALLDLMAREPRLCAHLHLPLQAGCDSTLARMHRPYDTAKFAQLLEKIR 292

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           S+ P++AI++D IVGFPGET++DF+A++D + +  +++   F YS R GTP + M +Q+ 
Sbjct: 293 SLVPNVAITTDVIVGFPGETEEDFQASLDFIRQCRFSKIHIFPYSQRKGTPAAVMPDQIS 352

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
              K ER+  L++  RE  +++    +GQ   VL E+  K  G   G +P    V  +S 
Sbjct: 353 NQEKQERVHRLEEVDREGNLAYRKEQIGQESTVLWERRNKNNGLWEGLTPGYVRVYADSP 412

Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468
            +  G I  VR+ ++    L G ++
Sbjct: 413 ENMKGKISAVRLENLFEDGLKGGII 437


>gi|210612282|ref|ZP_03289230.1| hypothetical protein CLONEX_01431 [Clostridium nexile DSM 1787]
 gi|210151656|gb|EEA82663.1| hypothetical protein CLONEX_01431 [Clostridium nexile DSM 1787]
          Length = 440

 Score =  217 bits (552), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 152/453 (33%), Positives = 238/453 (52%), Gaps = 27/453 (5%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
            FV S GC  N+ D+  M  +  S+G++ V+S + AD+IV+NTC     A E+    +  
Sbjct: 4   LFV-SLGCDKNLVDTEVMLGLLASRGHQMVDSEEIADVIVINTCCFIHDAKEESIQTILE 62

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           +   K    K G    ++V GC+AQ   +EI+     V+ V+G  +Y ++ E ++ A  G
Sbjct: 63  MAEYK----KAGSCKALIVTGCLAQRYKQEIIDEIEEVDAVLGTTSYDKIVEAIDEALAG 118

Query: 147 KRVVD-TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
              V+ TD       E   +V  G     G  A+L I EGCDK CT+C++P  RG   S 
Sbjct: 119 HTSVEMTDIDALPLVESKRLVTTG-----GHFAYLKIAEGCDKHCTYCIIPKIRGNFRSV 173

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            + +++ EA  L+  GV EI L+ Q    + GK L GEK +   LL  L +I GL  +R 
Sbjct: 174 PIERLLKEAEDLVAQGVKEIILVAQETTLY-GKDLYGEK-SLHKLLRELCKISGLRWIRI 231

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
              +P +++D LI+   + D +  YL LP+Q  SD ILK M RR +  +  +II ++R  
Sbjct: 232 LYCYPEEITDELIQVIKEEDKICNYLDLPIQHASDGILKRMGRRTSKEQLVEIIGKLRKE 291

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            PDIAI +  I GFPGET +     M+ VD++ + +   F YSP   TP + M +Q+ E+
Sbjct: 292 IPDIAIRTTLITGFPGETQEQHEELMEFVDEMEFDRLGVFTYSPEEDTPAAVMPDQIPED 351

Query: 386 VKAERLLCLQKKLRE--QQVSFN--DACVGQIIEVLIEKHGKEKGKLVGRS----PWLQS 437
           VK +R    Q +L E  Q+++F+  +  +G+ + V+IE    ++   VGR+    P +  
Sbjct: 352 VKEDR----QAELMELQQEIAFDLAEEMIGREVLVMIEGKVADENAYVGRTYKDAPNVDG 407

Query: 438 VVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468
           ++       +  GD  +VRIT      L GE++
Sbjct: 408 LIFVESEEELMSGDFARVRITGALEYDLMGEII 440


>gi|197117015|ref|YP_002137442.1| ribosomal protein S12 methylthiotransferase [Geobacter bemidjiensis
           Bem]
 gi|238066226|sp|B5ED60|RIMO_GEOBB RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|197086375|gb|ACH37646.1| ribosomal protein S12 methylthiotransferase [Geobacter bemidjiensis
           Bem]
          Length = 448

 Score =  216 bits (551), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 148/453 (32%), Positives = 238/453 (52%), Gaps = 33/453 (7%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCH-IREKAAEKVYSFLGRIRN 89
           S GC  N+ D+  M        YE       AD+IV+NTC  I+E   E + + L     
Sbjct: 13  SLGCPKNLVDAEVMLGYLSQDEYEVTTDETQADIIVVNTCSFIKEAKQESIDTILDLADR 72

Query: 90  LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149
             ++R K     L++V GC+ Q   +E+ +  P V++ +G   Y R+ E++   +  +  
Sbjct: 73  KHDARCK-----LLIVTGCLPQRYQQELAKELPEVDIFIGTGDYPRIAEIIAEKKQTEEQ 127

Query: 150 V----DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           +    D ++   D+  RL             TA+L I EGC   C++CV+P  RG   SR
Sbjct: 128 LCYTGDPNFVYNDEVPRL-------QSSPHYTAYLKIAEGCSNNCSYCVIPSLRGGHRSR 180

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            L+ ++ EA+ L++ GV E+ L+ Q++ A+ G+ L+G K +   L+  L +++ L  +R 
Sbjct: 181 PLATLLAEAKALVEGGVKELNLIAQDITAY-GRDLEG-KPSLELLIKELVKMEKLKWIRL 238

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
             ++P  ++D LI+   +   +  YL LP+Q  SD +L +M RR    E R +I ++R  
Sbjct: 239 LYAYPDGVTDSLIQLIKEEPKVCKYLDLPIQHISDPVLSNMKRRSGEAEIRTLISKLRRE 298

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            PDIAI +  IVGFPGET DDF+  +  V++  + +   F YS   GTP + M +QV E 
Sbjct: 299 IPDIAIRTSLIVGFPGETTDDFKKLLQFVEQTRFDRLGVFCYSREDGTPAAEMPDQVSER 358

Query: 386 VKAERLLCLQKKLREQQ--VSF--NDACVGQIIEVLIEKHGKE-----KGKLVGRSPWLQ 436
           +K ER     KKL   Q  VSF  N   V    +VL+E + +E     KG+   ++P + 
Sbjct: 359 IKRER----HKKLMRTQARVSFKHNRTLVDSEEDVLVEGYSEETELLLKGRSSRQAPDVD 414

Query: 437 SVV-LNSKNHNIGDIIKVRITDVKISTLYGELV 468
            +V + + N N+GDI++++ITD     L GE+V
Sbjct: 415 GLVYITAGNANVGDIVRLKITDSSDYDLIGEIV 447


>gi|182418337|ref|ZP_02949632.1| conserved hypothetical protein [Clostridium butyricum 5521]
 gi|237666343|ref|ZP_04526328.1| conserved hypothetical protein [Clostridium butyricum E4 str. BoNT
           E BL5262]
 gi|182377719|gb|EDT75263.1| conserved hypothetical protein [Clostridium butyricum 5521]
 gi|237657542|gb|EEP55097.1| conserved hypothetical protein [Clostridium butyricum E4 str. BoNT
           E BL5262]
          Length = 466

 Score =  216 bits (551), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 138/442 (31%), Positives = 241/442 (54%), Gaps = 18/442 (4%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  M + F  +GYE  +  + AD+ V+NTC +   + +K    + R R  
Sbjct: 39  TLGCRVNHYETEAMAEKFIREGYEITDFSNFADVYVVNTCSVTNMSDKKSRQIISRAR-- 96

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK--R 148
              RI E    ++   GC +Q   EE+ +    V+VV+G +    +   + +A+  K  +
Sbjct: 97  ---RINENA--IIAAVGCYSQVSPEEVAKIEG-VDVVLGTRNKGDIVYYVNKAKDEKESQ 150

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           +V  +     +FE L+I +  Y  K    AFL IQ+GC++FC +C++PYTRG   S+   
Sbjct: 151 IVVGEVLRNKEFEDLNIEE--YQDK--TRAFLKIQDGCNRFCAYCLIPYTRGAVCSKDPE 206

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
           +V+ E +KL ++G  EI L G +  ++ G  L+G+  +   +L  + ++ G+ R+R  + 
Sbjct: 207 KVISEIKKLAEHGFKEIILSGIHTASY-GVDLEGD-VSLMTILEEIEKVDGIERVRIGSI 264

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
            P   +D +I+    +  L P  HL +QSG D  LK MNRR+TA EY + + +IR    D
Sbjct: 265 EPCFFTDSVIEKMKSMKKLCPQFHLSLQSGCDATLKRMNRRYTAKEYEEAVYKIRKNLKD 324

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
            +I++D IVGFPGETD++F  T + +  +   +   FK+SPR GT  + M  Q+D  +K 
Sbjct: 325 ASITTDVIVGFPGETDEEFNLTYEYLKNLKLTKTHIFKFSPRKGTKAATMDNQIDGTIKE 384

Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKH-GKEKGKLVGRS-PWLQSVVLNSKNHN 446
           +R   L     + + +F+ + VG+ ++VL+E+   K+ G   G +  +++  ++N     
Sbjct: 385 KRSKALIDLNEKNEGNFSRSLVGRDMDVLVEQEVSKKPGVFEGYTRNYVKVEIVNGSEEI 444

Query: 447 IGDIIKVRITDVKISTLYGELV 468
           IG I+  RI +     + G+L+
Sbjct: 445 IGKIVPCRIEEANGDYVTGKLL 466


>gi|154505306|ref|ZP_02042044.1| hypothetical protein RUMGNA_02820 [Ruminococcus gnavus ATCC 29149]
 gi|153794349|gb|EDN76769.1| hypothetical protein RUMGNA_02820 [Ruminococcus gnavus ATCC 29149]
          Length = 440

 Score =  216 bits (550), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 150/452 (33%), Positives = 232/452 (51%), Gaps = 32/452 (7%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC-HIREKAAEKVYSFLGRIRN 89
           S GC  N+ D+  M  M  S+GY+ V     AD+IV+NTC  + +   E + + L     
Sbjct: 7   SLGCDKNLVDTEVMLGMLASRGYQMVEEETQADVIVINTCCFVHDAKEESIQNILEMAEY 66

Query: 90  LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149
            K  R+K      ++V GC+AQ   +EIL   P V+ V+G   Y ++ + ++ A  G   
Sbjct: 67  KKEGRLK-----ALIVTGCLAQRYRQEILDEIPEVDAVLGTTAYDKILDAIDEALKGHHT 121

Query: 150 V---DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           +   DTD   E + +RL    G +       A+L I EGCDK CT+C++P  RG   S  
Sbjct: 122 LTLADTDLLPEVETKRLVTTGGHF-------AYLKIAEGCDKHCTYCIIPKIRGNFRSVP 174

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
           + Q++ EA  L + GV E+ L+ Q    + GK L GEK +   LL  L +I G+  +R  
Sbjct: 175 MEQLLSEAEYLAEQGVKELILVAQETTLY-GKDLYGEK-SLHKLLRELCKISGIRWIRIL 232

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
             +P ++ D LI+   +   +  YL LP+Q  +D ILK M RR T  E   II ++R   
Sbjct: 233 YCYPEEIYDELIQTIKEEPKICHYLDLPIQHANDEILKRMGRRTTKQELIDIISKLRREI 292

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           PDIA+ +  I GFPGET +     M+ VD++ + +   F YSP   T  + M  Q++E V
Sbjct: 293 PDIALRTTLITGFPGETKEQHEELMEFVDEMEFDRLGVFTYSPEEDTAAARMEGQIEEEV 352

Query: 387 KAERLLCLQKKLRE--QQVSFNDA--CVGQIIEVLIEKHGKEKGKLVGRS----PWLQSV 438
           K ER    Q +L E  Q+++F+ A   VG+ + V+IE    ++   VGR+    P +  +
Sbjct: 353 KEER----QAELMELQQEIAFDTAENMVGKEVLVMIEGKVADENAYVGRTYRDAPNVDGL 408

Query: 439 VLNSKNHNI--GDIIKVRITDVKISTLYGELV 468
           +  +    +  GD  KV+++      L G L+
Sbjct: 409 IFVNTEEELMSGDFAKVKVSGAVDYDLIGGLI 440


>gi|291550943|emb|CBL27205.1| SSU ribosomal protein S12P methylthiotransferase [Ruminococcus
           torques L2-14]
          Length = 440

 Score =  216 bits (550), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 146/452 (32%), Positives = 234/452 (51%), Gaps = 32/452 (7%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC-HIREKAAEKVYSFLGRIRN 89
           S GC  N+ D+  M  M  S+GYE  N   +AD+IV+NTC  I +   E + + L     
Sbjct: 7   SLGCDKNLVDTEVMLGMLASRGYEMTNDEQEADIIVINTCCFIHDAKEESIQNILEMAEY 66

Query: 90  LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149
            KN   K      ++V GC+A+   +EIL   P V+ V+G   Y R+ + ++ A  G+  
Sbjct: 67  KKNGSAK-----ALIVTGCMAERYRQEILDEIPEVDEVLGTTAYDRILDAVDAALAGQHE 121

Query: 150 V---DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           V   D D     + +RL    G +       A+L I EGCDK CT+C++P  RG   S  
Sbjct: 122 VMTADLDALPLPETKRLVTTGGHF-------AYLKIAEGCDKHCTYCIIPKIRGNFRSVP 174

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
           + +++ EA+ L + GV E+ L+ Q    + GK L GEK +   LL  L +I G+  +R  
Sbjct: 175 MERLLKEAQDLAEQGVKELILVAQETTLY-GKDLYGEK-SLPKLLRELCKISGIRWIRIL 232

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
             +P +++D LI+   +   +  YL LP+Q  +D ILK M RR +  E   I+ ++R   
Sbjct: 233 YCYPEEITDELIQVMKEESKICHYLDLPIQHANDTILKRMGRRTSKQELIDIVQKLRKEI 292

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           PDI + +  I GFPGET +     M+ +D + + +  +F YSP   TP +   +Q+DE V
Sbjct: 293 PDICLRTTLITGFPGETQEQHEEVMEFIDTLEFDRLGAFTYSPEEDTPAATFEDQIDEEV 352

Query: 387 KAERLLCLQKKLRE--QQVSFNDA--CVGQIIEVLIEKHGKEKGKLVGRS----PWLQSV 438
           K +R    Q  + E  Q+++F+ A   +G+ + V+IE    ++   VGR+    P +  +
Sbjct: 353 KEDR----QADIMELQQEIAFDKAEDMIGREVLVMIEGKVADENAYVGRTYRDAPNVDGL 408

Query: 439 VLNSKNHNI--GDIIKVRITDVKISTLYGELV 468
           +  + +  +  GD  KV++T      L GEL+
Sbjct: 409 IFINTDVELISGDFAKVKVTGALDYDLIGELI 440


>gi|170592325|ref|XP_001900919.1| CDK5RAP1-like protein [Brugia malayi]
 gi|158591614|gb|EDP30219.1| CDK5RAP1-like protein, putative [Brugia malayi]
          Length = 453

 Score =  216 bits (550), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 143/452 (31%), Positives = 241/452 (53%), Gaps = 47/452 (10%)

Query: 36  MNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRI 95
           MNV D   +  +  S GY   + + +AD+I+L TC IRE A  KV+  L  +R +   R 
Sbjct: 1   MNVNDVELVRSLLLSSGYVETDDVKEADIILLMTCSIREGAENKVWDELKVLRKI---RR 57

Query: 96  KEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYS 155
           K+G   +V V GC+A+     +L  +  V+VV GP +Y  LP LL  AR G   ++   S
Sbjct: 58  KKG---VVGVLGCMAERVRHNLLTCTENVDVVAGPDSYRDLPRLLAIARCGSMAINVQLS 114

Query: 156 VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEAR 215
           VE+ +  +  V      K   TA+++I  GCD  CT+C+VPYTRG E SR ++ ++DE R
Sbjct: 115 VEETYADVVPV---RKDKFSKTAYVSIMRGCDNMCTYCIVPYTRGRERSRPMNSILDEIR 171

Query: 216 KLIDNGVCEITLLGQNVNAWR-----------------GKGLDGE------KCTFSDLLY 252
           +L D GV ++TLLGQNVN++R                   G   +         F  LL 
Sbjct: 172 RLSDEGVKQVTLLGQNVNSYRDLSEISFLSANLAEPGVAPGFRTKYKPKRGGYXFLTLLD 231

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
            +S+I   +R+R+T+ HP+D    +I+   +   +   +HLP QSGS+ +L +M+R ++ 
Sbjct: 232 KVSQIDSEMRIRFTSPHPKDFPLEVIQLIKERSNICKQIHLPAQSGSNIVLDAMDRGYSR 291

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
             Y +++ RI++V P+++++SDFI GF GET+D  R ++DL+      +  ++++     
Sbjct: 292 ESYLELVHRIKTVLPNVSLTSDFIAGFCGETEDCHRESLDLIKH----KTKAYRH----- 342

Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGR 431
                + + V + VK  R   L    RE  +  N++ +G    VL+E+  K   + L GR
Sbjct: 343 -----LRDDVPKEVKNRRHQELAGAFRETALKHNESLLGTKQLVLLEETSKRSSEHLRGR 397

Query: 432 SPWLQSVVLNSKNHNIGDIIKVRITDVKISTL 463
           +    SV++N   ++   +++++  D  ++ +
Sbjct: 398 TDGGVSVIINKYYNDGSGLVELKPGDYVVAKI 429


>gi|188585813|ref|YP_001917358.1| RNA modification enzyme, MiaB family [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179350500|gb|ACB84770.1| RNA modification enzyme, MiaB family [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 446

 Score =  216 bits (549), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 137/454 (30%), Positives = 240/454 (52%), Gaps = 22/454 (4%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYE----RVNSMDDADLIVLNTCHIREKAAE 78
           VP+  F+ ++GC++N YDS  ++++F  +G+E        +D+ D+ ++NTC +   A  
Sbjct: 4   VPRVKFI-TFGCKVNQYDSEALKELFQDRGFEISDWNPQELDNIDVAIINTCTVTHLADR 62

Query: 79  KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPE 138
           K       IR LK    +   + ++ V GC  Q + + + +    V++V G +    L E
Sbjct: 63  KARQ---HIRKLK----RRNPNCVIAVTGCYPQTDPQTV-KALEGVDIVHGIEDRSGLVE 114

Query: 139 LLERARFGKRVVDTDYSVED-----KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC 193
           L+E+A   + +      + D     +FE L I    + +      FL IQEGCD+FC++C
Sbjct: 115 LVEQALSKENIWQGAIHLHDSRPKGEFENLKI--KNFKKHDRTRHFLKIQEGCDQFCSYC 172

Query: 194 VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS 253
           ++PY RG   SR    V+ E ++ + NG  EI L G N+ A+  +  +      + LL  
Sbjct: 173 IIPYARGHLRSRPPEDVISEIKQAVSNGFKEIVLTGINLGAYGRE--NSNLPNLATLLDK 230

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
           +  +KG  R+R ++  P++++  L++   + + +  +LH+P+QSG + ILK+MNR ++  
Sbjct: 231 IIHLKGDYRIRLSSCEPQEITIGLLELVTNSEKICKHLHIPLQSGDNEILKAMNRDYSKE 290

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
           +YR+I+   R   P IAI++D IVGFPGE+ + FR T + V KIG++    F+YSPR  T
Sbjct: 291 DYRKIVMAAREKSPSIAITTDIIVGFPGESANHFRNTKEFVKKIGFSDIHIFQYSPRKNT 350

Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSP 433
           P     +QV    K  R   L +  R+    +++  + + + VL+EKH ++    V  + 
Sbjct: 351 PAQEFSDQVHSKEKKARSQELIEISRDLSRVYHEQFIDKTVPVLVEKHEEDVASGVSDTY 410

Query: 434 WLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
              +  + S+ +    I +V+I       +YGEL
Sbjct: 411 LKVTFNVESEINLYNKICQVQINSADEEMVYGEL 444


>gi|308800958|ref|XP_003075260.1| Predicted Fe-S oxidoreductase (ISS) [Ostreococcus tauri]
 gi|116061814|emb|CAL52532.1| Predicted Fe-S oxidoreductase (ISS) [Ostreococcus tauri]
          Length = 548

 Score =  216 bits (549), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 158/502 (31%), Positives = 244/502 (48%), Gaps = 71/502 (14%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +R FV++YGCQMN  DS  +  +     +   +S  DA ++++NTC IRE A  +V++  
Sbjct: 43  ERVFVETYGCQMNANDSDVVRALLVEAKHAIASSASDATVVLVNTCAIRENAESRVWT-- 100

Query: 85  GRIRNLKNSRIKEGGDLLVV-VAGCVAQA-EGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            R+R L+  R   G  L  V V GC+A+  +G+ +     + ++VVGP  Y  +  LL  
Sbjct: 101 -RLRQLRAERRAPGSRLRAVGVLGCMAERLKGKILSAEEGLADMVVGPDAYRDVVRLLRV 159

Query: 143 ARFG---KRVVDTDYSVEDKFERLSI---VDGGYN-----RKRGVT--AFLTIQEGCDKF 189
           AR     +R  +T  +  D  +R+++   +D  Y      R   ++  A++++  GCD  
Sbjct: 160 AREESDRRRQRETRANTLDDEDRMNVMLSLDETYADVFPLRADPMSPQAYVSVTRGCDNM 219

Query: 190 CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC---- 245
           C FCVVP+TRG E SR    V++E RKLID GV EITLLGQNVN++      G       
Sbjct: 220 CAFCVVPFTRGRERSRPFESVLEECRKLIDQGVKEITLLGQNVNSYADASEVGTSAKTDA 279

Query: 246 -----------------------TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHG 282
                                   F+DL+ +++ I    R+R+T+ HP+D  D L++   
Sbjct: 280 DAPFGAYAKGFTSVYKPKRVGARAFADLVEAVAAIDVECRVRFTSPHPKDFPDDLLRVIA 339

Query: 283 DLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGE 342
           +   +   LH+P QSGS   L+ M R +T   Y ++I+R R + P +AISSDFI GF GE
Sbjct: 340 NTPNVCKQLHMPAQSGSTSTLERMRRGYTREAYLELIERAREIIPGVAISSDFISGFCGE 399

Query: 343 TDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQ 402
           ++D+   T+ L++ + Y  A +             +  +  E VK  RL  + +  R   
Sbjct: 400 SEDEHAETLTLLETVRYEHARTR----------RGLRRRRPEEVKKRRLAEVIETFRRCA 449

Query: 403 VSFNDACVGQIIEVLIEKHGKE--KGKLVGRSPWLQSVVLNSKNHNI------------- 447
              N   VG    VLIE   K+  + ++ GRS   + VV+  K                 
Sbjct: 450 ADVNAREVGCTHLVLIEGASKKNPESQMSGRSDTGKRVVVQGKRTKANALDGDSEEVDIK 509

Query: 448 -GDIIKVRITDVKISTLYGELV 468
            GD +  +I +   STL  E V
Sbjct: 510 SGDYVVAKIVEAGASTLVAEPV 531


>gi|331089440|ref|ZP_08338339.1| ribosomal protein S12 methylthiotransferase rimO [Lachnospiraceae
           bacterium 3_1_46FAA]
 gi|330404808|gb|EGG84346.1| ribosomal protein S12 methylthiotransferase rimO [Lachnospiraceae
           bacterium 3_1_46FAA]
          Length = 440

 Score =  216 bits (549), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 150/452 (33%), Positives = 239/452 (52%), Gaps = 32/452 (7%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC-HIREKAAEKVYSFLGRIRN 89
           S GC  N+ D+  M  +  S+GYE  +    AD+IV+NTC  I +   E + + L     
Sbjct: 7   SLGCDKNLVDTEVMLGLLASRGYEMTDDERQADIIVINTCCFIHDAKEESIQNILEMAEY 66

Query: 90  LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149
            K+ ++K      ++V GC+AQ   +EIL   P V+ V+G   Y ++ + ++RA  G++ 
Sbjct: 67  KKSGQVK-----ALIVTGCLAQRYRQEILDEIPEVDEVLGTTAYDKILDAVDRALEGEQG 121

Query: 150 V---DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           +   D +       +RL    G +       A+L I EGCDK CT+C++P  RG   S  
Sbjct: 122 IILSDLNALPVSGAKRLVTTGGHF-------AYLKIAEGCDKHCTYCIIPKIRGNFRSVP 174

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
           + +++ EA++L + GV E+ L+ Q    + GK L GEKC    L+  L +I G+  +R  
Sbjct: 175 MERLIKEAKELAEQGVKELILVAQETTLY-GKDLYGEKC-LHRLVEELCKIAGIRWIRIL 232

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
             +P +++D LI+       +  YL LP+Q  SD ILK M RR +  E   I+ ++R   
Sbjct: 233 YCYPEEITDELIEVIKKEPKVCHYLDLPIQHASDSILKRMGRRTSKQELTDIVKKLRKEI 292

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           PDI + +  I GFPGET+D     M  VD++ + +   F YSP   TP + M +Q+ E V
Sbjct: 293 PDICLRTTLITGFPGETEDQHEELMQFVDEMEFDRLGVFTYSPEEDTPAAVMPDQIAEEV 352

Query: 387 KAERLLCLQKKLRE--QQVSFNDA--CVGQIIEVLIEKHGKEKGKLVGRS----PWLQSV 438
           K ER    Q  L E  Q+++F++A   +G+ + V+IE    ++   VGR+    P +  +
Sbjct: 353 KEER----QADLMELQQEIAFDNAENMIGREMLVMIEGKVADENAYVGRTYRDAPNVDGL 408

Query: 439 V-LNSKNHNI-GDIIKVRITDVKISTLYGELV 468
           + +N++   I GD  KV+IT      L GEL+
Sbjct: 409 IFINTEEELISGDFAKVKITGALEYDLIGELL 440


>gi|160939106|ref|ZP_02086457.1| hypothetical protein CLOBOL_04000 [Clostridium bolteae ATCC
           BAA-613]
 gi|158438069|gb|EDP15829.1| hypothetical protein CLOBOL_04000 [Clostridium bolteae ATCC
           BAA-613]
          Length = 459

 Score =  216 bits (549), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 152/458 (33%), Positives = 241/458 (52%), Gaps = 33/458 (7%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + F  S GC  N+ D+ +M  +   +G    +   +AD+I++NTC     A E+  + + 
Sbjct: 13  KLFCVSLGCDKNLVDTEKMLGLLNGRGITFTDDETEADVILVNTCCFIGDAKEESVNTI- 71

Query: 86  RIRNLKNSRIKEGGDL-LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
               L  +R KE G+L  ++VAGC+AQ   +EIL   P V+ ++G  +Y  + ++L+   
Sbjct: 72  ----LDMARYKEEGNLKALLVAGCLAQRYKQEILDEIPEVDAILGTTSYEEVAKVLDEVL 127

Query: 145 FGKRVVDT----DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
            G+         D S   + E   +V  G     G  AFL I EGCDK CT+C++PY RG
Sbjct: 128 AGRTGTHLSCFHDLSELPQTEVRRVVTTG-----GHYAFLKIAEGCDKRCTYCIIPYLRG 182

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
              S  + Q+V EAR+L + GV E+ L+ Q    + G+ L GEKC    LL  L++I G+
Sbjct: 183 PYRSVPIEQLVKEARQLAEAGVKELILVAQETTLY-GRDLYGEKC-LPRLLRELAKIPGI 240

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
             +R    +P +++D LI+     + +  YL +P+Q  SDRILK M RR    E  + I 
Sbjct: 241 YWIRIQYCYPEEITDELIETIRTEEKVCNYLDIPIQHASDRILKRMGRRTNKEELMERIG 300

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R   PDIAI +  I GFPGET+ D    MD V+++ + +   F YS    TP  +  +
Sbjct: 301 KLRQEIPDIAIRTTLISGFPGETESDHEELMDFVNEMEFERLGVFAYSAEEDTPAFSYPD 360

Query: 381 QVDENVKAER---LLCLQKKLREQQVSFN--DACVGQIIEVLIEKHGKEKGKLVGRS--- 432
           QV E VK ER   ++ LQ     Q ++F   +  VG+++ VLIE    ++   VGR+   
Sbjct: 361 QVPEEVKEERRDEIMELQ-----QDIAFEHCENMVGRVLTVLIEGKVVDEPAYVGRTYMD 415

Query: 433 -PWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGEL 467
            P +  ++  + +  +  GD ++V++T      L GE+
Sbjct: 416 APNVDGLIFVNGDVELMSGDFVRVKVTGAAEYDLIGEV 453


>gi|253699275|ref|YP_003020464.1| MiaB-like tRNA modifying enzyme YliG [Geobacter sp. M21]
 gi|251774125|gb|ACT16706.1| MiaB-like tRNA modifying enzyme YliG [Geobacter sp. M21]
          Length = 448

 Score =  215 bits (548), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 149/461 (32%), Positives = 244/461 (52%), Gaps = 33/461 (7%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCH-IREKAAEKVY 81
           + ++  + S GC  N+ D+  M        YE       AD+IV+NTC  I+E   E + 
Sbjct: 5   IKEKVSLVSLGCPKNLVDAEVMLGYLSRDEYEVTTDETQADIIVVNTCSFIKEAKQESID 64

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL- 140
           + L       ++R K     L++V GC+ Q   +E+ +  P V++ +G   Y R+ E++ 
Sbjct: 65  TILDLADRKHDARCK-----LLIVTGCLPQRYQQELAKELPEVDIFIGTGDYPRIAEIVA 119

Query: 141 ERARFGKRVV---DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197
           E+ +  +++    D ++   D+  RL             TA+L I EGC   C++CV+P 
Sbjct: 120 EKKQTDEQLCYTGDPNFVYNDEVPRL-------QSSPHYTAYLKIAEGCSNNCSYCVIPS 172

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257
            RG   SR L+ ++ EA+ LI+ GV E+ L+ Q++ A+ G+ L+G   +   L+  L+++
Sbjct: 173 LRGGHRSRPLATLLAEAKTLIEGGVKELNLIAQDITAY-GRDLEGTP-SLELLIKELAKM 230

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
           + L  +R   ++P  ++D LI+   D   +  YL LP+Q  SD +L +M RR    E R 
Sbjct: 231 EKLKWIRLLYAYPDGVTDSLIQLIKDEPKVCKYLDLPIQHISDPVLSNMKRRSGETEIRN 290

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
           +I ++R   PDIAI +  IVGFPGET +DF+  +  V++  + +   F YS   GTP + 
Sbjct: 291 LIAKLRREIPDIAIRTSLIVGFPGETSEDFKKLLQFVEETRFDRLGVFCYSREEGTPAAQ 350

Query: 378 MLEQVDENVKAERLLCLQKKLREQQ--VSF--NDACVGQIIEVLIEKHGKE-----KGKL 428
           M +QV E +K ER     KKL   Q  VSF  N   V    +VL+E   +E     KG+ 
Sbjct: 351 MPDQVSERIKRER----HKKLMRTQARVSFKHNRTLVDSEEDVLVEGFSEETELLLKGRS 406

Query: 429 VGRSPWLQSVV-LNSKNHNIGDIIKVRITDVKISTLYGELV 468
             ++P +  +V + + N N+GDI++++ITD     L GE+V
Sbjct: 407 SRQAPDVDGLVYITAGNANVGDIVRLKITDSSDYDLIGEIV 447


>gi|307243292|ref|ZP_07525459.1| MiaB-like protein [Peptostreptococcus stomatis DSM 17678]
 gi|306493310|gb|EFM65296.1| MiaB-like protein [Peptostreptococcus stomatis DSM 17678]
          Length = 431

 Score =  215 bits (548), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 138/433 (31%), Positives = 237/433 (54%), Gaps = 24/433 (5%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  M +MF   GYE V S D AD+ V+NTC +   +  K   ++ R++  
Sbjct: 8   TLGCKVNQYETEAMLEMFEKNGYENVGSEDYADVYVINTCTVTHMSDRKSRQYIRRVK-- 65

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
                K+  + ++ V GC +Q   EEIL     VN+V+G      + + +++     +V 
Sbjct: 66  -----KKNPNSIIAVVGCYSQVSPEEILDIED-VNLVMGTNDRRTIVDKVDKIDSNSKVS 119

Query: 151 DTDYSVE-DKFERLSIVDGGYNRKRGVT-AFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
             D  ++  +FE + I     ++  G T AF+ IQ+GCD++C++C++PY RG   SR   
Sbjct: 120 TVDDIMKVREFEEIEI-----SQTNGKTRAFIKIQDGCDRYCSYCIIPYARGRIRSRDRQ 174

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
            +++E  KL  NG  E+ L G +V ++ G+ LD E      ++  +++++G+ R+R ++ 
Sbjct: 175 SIIEEIEKLAANGYKEVVLTGIHVASY-GRDLD-EDIDILTVIKDVNKVEGIERIRLSSV 232

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
            P   ++  I     +D L+P+ HL +QSG D  LK MNRR+T  +Y++ +D +R+  P 
Sbjct: 233 EPVLFTEDFIDQISKIDKLVPHYHLSLQSGCDATLKRMNRRYTTEDYKRTVDNLRARIPR 292

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           +++++D IVGFPGET+++F  T+  +  +       FKYSPR GTP + M +QVD  +K 
Sbjct: 293 VSLTTDVIVGFPGETNEEFSQTLAYLKDLKLMHMHVFKYSPRKGTPAAVMEDQVDPQMKQ 352

Query: 389 ER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445
            R   LL L  K  +    F D  +   ++VL E+  K+ G   G +     + + S   
Sbjct: 353 MRSDSLLALSTKNFKL---FADQFINTDLKVLFEEVDKD-GYYEGLTDNYMRIKVRSDLD 408

Query: 446 NIGDIIKVRITDV 458
             G I+ VRI ++
Sbjct: 409 IRGQILPVRIEEI 421


>gi|304439566|ref|ZP_07399471.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Peptoniphilus duerdenii
           ATCC BAA-1640]
 gi|304371945|gb|EFM25546.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Peptoniphilus duerdenii
           ATCC BAA-1640]
          Length = 433

 Score =  215 bits (548), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 133/391 (34%), Positives = 229/391 (58%), Gaps = 31/391 (7%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDD-ADLIVLNTCHIREKAAEKVYSFLG 85
           F + + GC++N Y+S  M+++F   GY  V+S  D AD+ V+NTC +   +  K   ++ 
Sbjct: 4   FSILTLGCKVNQYESEAMKEIFEKNGYIEVDSETDVADVYVVNTCTVTNLSDRKSRQYIR 63

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R +       +E  D +V V GC +Q   +E+ +    V++++G     R+ EL+E  + 
Sbjct: 64  RAK-------RENPDSIVCVVGCYSQVSPDEV-QAIEGVDIIMGTTDRSRIFELVENFKK 115

Query: 146 GKRVVDTDYSVE--DKFERLSIVDGGYNRKRGVT-AFLTIQEGCDKFCTFCVVPYTRGIE 202
            K  +    S++   +F+ + I     +++  +T +++ +Q+GC+++CT+C++PY RG  
Sbjct: 116 DKNQISIVKSLKGFTEFQHIEI-----DKESEMTRSYMKVQDGCNRYCTYCIIPYARGPI 170

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR++   V+EA++L + G  E+ L G ++ ++ GK L  E+    DL+  ++++ G+ R
Sbjct: 171 RSRTIEDSVEEAKRLSEAGYKELVLTGIHIGSY-GKDLGDER--LVDLIEEITKVDGIER 227

Query: 263 LRYTTSHP----RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           +R ++  P    RD  +  IKA G +     + HL +QSGS+ +LK+MNRR+T  EY + 
Sbjct: 228 IRLSSIEPITITRDFLE-RIKATGKV---CDHFHLSLQSGSNAVLKAMNRRYTREEYIET 283

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
            D IR   P + +++D IVGFPGETD+DF  T+DLV ++ +++   FKYS R GTP + M
Sbjct: 284 CDLIREYYPYVGLTTDIIVGFPGETDEDFEDTVDLVKRVEFSKIHVFKYSKRSGTPAAEM 343

Query: 379 LEQVDENVKAE---RLLCLQKKLREQQVSFN 406
             QVD N+K E   RLL L  K+ E+ +  N
Sbjct: 344 KNQVDGNIKIERSNRLLELSDKMMERFIEKN 374


>gi|225568730|ref|ZP_03777755.1| hypothetical protein CLOHYLEM_04809 [Clostridium hylemonae DSM
           15053]
 gi|225162229|gb|EEG74848.1| hypothetical protein CLOHYLEM_04809 [Clostridium hylemonae DSM
           15053]
          Length = 427

 Score =  215 bits (548), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 128/412 (31%), Positives = 224/412 (54%), Gaps = 31/412 (7%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++  + + GC++N Y++  M+++    GYE V   + AD+ ++NTC +   A  K    L
Sbjct: 2   KKVALHNLGCKVNAYETEAMQELLAQHGYEIVPFEEGADVYIINTCTVTNMADRKSRQML 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE--- 141
            R R +  S +       +V AGC  QA GE+       +++V+G      L  +LE   
Sbjct: 62  HRARKMNPSAV-------IVAAGCYVQARGEDA---DDCIDIVIGNNRKKDLIRILEEYE 111

Query: 142 --RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
             R   G+ ++D D++  D++E L++     + +    A++ +Q+GC++FC++C++PY R
Sbjct: 112 DGRWETGEGLLDIDHT--DEYEELNVSRTAEHTR----AYIKVQDGCNQFCSYCIIPYAR 165

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G   SR    V+ E R+L + G  E+ L G +++++   G+D    T  DLL  +  + G
Sbjct: 166 GRVRSRKRESVLAEVRRLAEGGYKEVVLTGIHLSSY---GVD----TGDDLLRLIEAVHG 218

Query: 260 ---LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
              + R+R  +  PR +++   +A   L  + P+ HL +QSG +  LK MNRR+TA EY 
Sbjct: 219 TDGIERIRLGSLEPRIVTEEFAQALAGLPKICPHFHLSLQSGCNATLKRMNRRYTAEEYF 278

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
           +  + +R    D A+++D IVGFPGETD +F  +   +D++ + +   FKYS R GT  +
Sbjct: 279 EKCELLRRYFRDPALTTDVIVGFPGETDAEFEESRAFIDRVDFYETHVFKYSKREGTKAA 338

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL 428
            M +QV + VK  R   L +  R +Q ++ +  +G  +EVL+E+     G+L
Sbjct: 339 GMEDQVPDEVKTARSSVLLELSRRKQAAYEEKLIGTTVEVLMEETVMRGGEL 390


>gi|325290538|ref|YP_004266719.1| RNA modification enzyme, MiaB family [Syntrophobotulus glycolicus
           DSM 8271]
 gi|324965939|gb|ADY56718.1| RNA modification enzyme, MiaB family [Syntrophobotulus glycolicus
           DSM 8271]
          Length = 464

 Score =  215 bits (547), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 146/456 (32%), Positives = 237/456 (51%), Gaps = 40/456 (8%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F+ + GC++N  +S  +  +F   GY+ V   ++ D+IV+NTC +    + K    +
Sbjct: 14  KKVFLATLGCKVNQSESEALAQLFADHGYDVVEDKENPDIIVINTCTVTGTGSSKSRKLI 73

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R+       IKE     + V GC +Q    E++     V++V+G +    + E LE++ 
Sbjct: 74  RRM-------IKEHPQSFIAVMGCYSQL-NPEVVAALEGVDLVLGTKDRLTILEHLEKSW 125

Query: 145 FG---------KRVV---DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTF 192
           FG         KR      T Y  + ++E + +V       RG  A + IQ+GC++FC++
Sbjct: 126 FGHIGSIEAGGKRSALKAVTQYDDQPEYEEMPLVK---QESRG-RAMIKIQDGCNQFCSY 181

Query: 193 CVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA----WRGKGLDGEKC--T 246
           C+VP  RG   SR   ++ +EAR L+  G  E+ L G ++      W   G  G+     
Sbjct: 182 CIVPLARGPSRSRPPEKIEEEARMLLRGGYKELVLTGIHIGVYGRDWNRGGETGKDTGDE 241

Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKA-HGDLDVLMPYLHLPVQSGSDRILKS 305
              LL  ++ + GL RLR  +  P+++S  L++    +  V+ P+ H+P+QSGSD +LK 
Sbjct: 242 LGCLLDRIAGLPGLARLRLGSIEPKEISSGLLQVIAKNQKVVCPHFHIPLQSGSDSVLKR 301

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           M R +T  EY  ++DRIRS  P  AIS+D + GFPGET ++   +M+ + K   A    F
Sbjct: 302 MRRPYTTAEYWDLLDRIRSRFPQAAISADVMTGFPGETREEHTESMEFIQKCRLADLHVF 361

Query: 366 KYSPRLGTPGSNM---LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-- 420
            YS R GTP +++   +E+ ++ V+A+ LL L K  RE  VS   + + + IEVL+EK  
Sbjct: 362 PYSRRPGTPAADLGGQIEKREKTVRAKELLELGKTSRENYVS---SWIKEEIEVLVEKIA 418

Query: 421 -HGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRI 455
             G  +G             LN  +  IGDII+VR+
Sbjct: 419 ATGNARGYTANYIEVEIPAELNFGDWKIGDIIRVRL 454


>gi|75764337|ref|ZP_00743864.1| tRNA 2-methylthioadenosine synthase homolog [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|74488177|gb|EAO51866.1| tRNA 2-methylthioadenosine synthase homolog [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
          Length = 427

 Score =  215 bits (547), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 135/416 (32%), Positives = 227/416 (54%), Gaps = 21/416 (5%)

Query: 47  MFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVA 106
           MF   GYER      AD+ V+NTC +     +K    + R        +++  D ++ V 
Sbjct: 1   MFKQGGYERTEYEKKADVYVINTCTVTNTGDKKSRQVIRRA-------VRQNPDAVICVT 53

Query: 107 GCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDK--FERLS 164
           GC AQ    EI+   P V++VVG Q   ++   +E  R  ++ ++   ++     +E L 
Sbjct: 54  GCYAQTSPAEIMA-IPGVDIVVGTQDREKMLGYIEEFRKERQPINAVRNIMKTRVYEEL- 111

Query: 165 IVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCE 224
             D  Y   R   A L IQEGC+ FCTFC++P+ RG+  SR   +V+ +A++L+D G  E
Sbjct: 112 --DVPYFTDR-TRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQAQQLVDAGYKE 168

Query: 225 ITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKGLVRLRYTTSHPRDMSDCLIKAHGD 283
           I L G +   +   G D +    + LL  + +E+ GL RLR ++     +SD +I+    
Sbjct: 169 IVLTGIHTGGY---GEDIKDYNLAGLLRDMEAEVGGLKRLRISSIEASQISDEVIEVLDK 225

Query: 284 LDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGET 343
            +V++ +LH+P+QSGS+ +LK M R++T   +++ +DR++   P +AI+SD IVGFPGET
Sbjct: 226 SEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAITSDVIVGFPGET 285

Query: 344 DDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQV 403
           +++F  T + + +  +++   F YS R GTP + M +QV E+VK +R+  L +   +   
Sbjct: 286 EEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVKNDRVHRLIELSNQLAK 345

Query: 404 SFNDACVGQIIEVLIE---KHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRIT 456
            +  A  G+++E++ E   K G  +G  VG +     +V       IG ++KV+IT
Sbjct: 346 EYASAFEGEVLEIIPEEQFKDGDREGLYVGYTDNYLKIVFEGSEELIGKLVKVKIT 401


>gi|167747072|ref|ZP_02419199.1| hypothetical protein ANACAC_01784 [Anaerostipes caccae DSM 14662]
 gi|167654032|gb|EDR98161.1| hypothetical protein ANACAC_01784 [Anaerostipes caccae DSM 14662]
          Length = 439

 Score =  215 bits (547), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 137/434 (31%), Positives = 228/434 (52%), Gaps = 18/434 (4%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V + GC++N Y+S  M DM    G E V+  + AD+ ++NTC +   A  K    L R +
Sbjct: 10  VVTLGCKVNQYESDAMFDMLTDAGAEIVSPKEGADIYIVNTCSVTNIAERKSRQMLHRAK 69

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
            L         D +V   GC AQ  G+E L++ P++++++G      L  +LE+   G R
Sbjct: 70  KLNP-------DTVVAAVGCYAQV-GKEELKKDPLIDLIIGNNKKKDLIPILEKYFEGHR 121

Query: 149 --VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
                 D S   ++E L +     +      A++ +Q+GC++FC++C++PY RG   SR 
Sbjct: 122 RDAEVLDLSSGSEYEALHV----RHLNEHTRAYIKVQDGCNQFCSYCIIPYARGRVRSRD 177

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
           +  V+ E R L  NG  E  + G +V ++ G  LDG+K    DLL  + ++ G+ R+R  
Sbjct: 178 MEDVLSEIRGLAQNGCREFVITGIHVCSY-GTDLDGDK-GLIDLLEEIGKVGGVDRIRLG 235

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
           +  P  +++  +K    ++   P+ HL +QSG D  LK MNR++T  E R+  + +R   
Sbjct: 236 SLEPGIITEDFVKRLQSIEQFCPHFHLSLQSGCDATLKRMNRKYTTDEIREKAEILRKAY 295

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
            D A+++D IVGFPGET+++F AT   +++IG  +   FKYS R GT  + M +QV++  
Sbjct: 296 EDPALTTDIIVGFPGETEEEFEATRKFLEEIGLYEMHVFKYSKRAGTRAAVMEDQVNDQE 355

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK--LVGRSPWLQSVVLNSKN 444
           KA R   L     E + +F +  +G   +VLIE+  +       VG +     V + S+ 
Sbjct: 356 KARRSAVLIAMNEEHKNAFENRQIGTRRKVLIEEKLRNSSGNFYVGHTKEYVKVAVESEE 415

Query: 445 HNIGDIIKVRITDV 458
                I++V +T +
Sbjct: 416 PLENQIVEVELTGI 429


>gi|327440950|dbj|BAK17315.1| 2-methylthioadenine synthetase [Solibacillus silvestris StLB046]
          Length = 449

 Score =  215 bits (547), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 140/449 (31%), Positives = 246/449 (54%), Gaps = 27/449 (6%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           + + GC++N Y++  +  +F  QGYER      AD+ V+NTC +     +K    + R  
Sbjct: 11  LHTLGCKVNHYETEAIWQLFKEQGYERTEFDHQADVYVINTCTVTNTGDKKSRQVIRRA- 69

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
                 I++  D ++ V GC AQ    EI+   P V++VVG Q   ++   +++ R  ++
Sbjct: 70  ------IRQNPDAVICVTGCYAQTSPAEIMA-IPGVDIVVGTQDREKMLGYIDQYRNERQ 122

Query: 149 VVDTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
            ++   ++     +E L  V    +R R   A L IQEGC+ FCTFC++P+ RG+  SR 
Sbjct: 123 PINAVRNIMKNRVYEELD-VPAFTDRTR---ASLKIQEGCNNFCTFCIIPWARGLMRSRD 178

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKGLVRLRY 265
             +V+ +A++L+D G  EI L G +     G G D +    + LL  L +++KGL RLR 
Sbjct: 179 PEEVIRQAQQLVDAGYLEIVLTGIHTG---GYGQDFKDYNLAQLLRDLEAQVKGLKRLRI 235

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
           ++     ++D +I    + ++++ +LH+P+QSGSD +LK M R++T   + + +++++  
Sbjct: 236 SSIEASQLTDEVIDVLQNSEIVVNHLHIPIQSGSDTVLKRMRRKYTMEFFAERLEKLKIA 295

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            PD+A++SD IVGFPGET+++F  T + +    +++   F YS R GTP + M +QVDE 
Sbjct: 296 LPDLAVTSDVIVGFPGETEEEFMETFNFIRDHKFSELHVFPYSQRTGTPAARMEDQVDEE 355

Query: 386 VKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK---LVGRSPWLQSVV 439
           +K E   RL+ L  +L ++  S  +   G+++EV+ E+  K+       VG +     V+
Sbjct: 356 IKNERVHRLIALNDQLAKEYASRFE---GEVLEVIPEERFKDSDNENLYVGYTTNYLKVI 412

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  +G ++KV++T        G+ V
Sbjct: 413 FEGAEEMVGQLVKVKVTKAGYPYNEGQFV 441


>gi|309388923|gb|ADO76803.1| RNA modification enzyme, MiaB family [Halanaerobium praevalens DSM
           2228]
          Length = 438

 Score =  214 bits (546), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 135/435 (31%), Positives = 237/435 (54%), Gaps = 28/435 (6%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  + D+F   GY+ V+  + AD+ ++N+C +  +AA K      R +  
Sbjct: 11  TLGCKVNQYETEAVIDIFLENGYQIVDFSEKADVYIVNSCTVTNEAARKTRQIARRAK-- 68

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
                ++  + LV + GC  QA  +E+ R    ++ V+G      +    E    GK + 
Sbjct: 69  -----RKYSNSLVAIVGCYTQAFPDEV-RNIEEIDFVMGSNNKAEILAKAEEMLAGKNIN 122

Query: 151 D--TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
               +Y    ++E L +     N  R   A + I++GC++FC++C++PY RG   SR   
Sbjct: 123 SELKEYQQLKEYEDLKL-KSLSNTTR---ANVKIEDGCNQFCSYCIIPYARGPVRSRKKE 178

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYTT 267
            + +E ++L   GV EI L G ++ A+   G D G K   + L+ SL+EIK L R+R ++
Sbjct: 179 SITEEVKRLSKQGVKEIVLTGTHLGAY---GSDKGNKKALAQLMESLTEIKSLKRVRLSS 235

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
               ++   +I    + D+  P+LHLP+QSGS++ILK+MNR +T  E+++ + ++R   P
Sbjct: 236 IEGTEIDQGIINLISESDIFCPHLHLPLQSGSNQILKAMNRPYTVEEFKKTVAKLRKKIP 295

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
           D+AI++D IVGFPGET+  F  T+ +V +I +A+   F YS R GTP + M EQ++ N+ 
Sbjct: 296 DLAITTDVIVGFPGETEKTFAETLKVVKEISFAKVHVFPYSAREGTPAAKM-EQLNGNIV 354

Query: 388 AERLLCLQKKLR----EQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GRSPWLQSVVLNS 442
            E      KKLR       +++    +G+  +VLIE+    K  L+ G +     V+++ 
Sbjct: 355 KE----YSKKLRLANEALMLNYQKEFIGKTKKVLIEEVRDHKTNLLTGYTDNYLKVLISG 410

Query: 443 KNHNIGDIIKVRITD 457
            +     ++KV++ +
Sbjct: 411 SDALKNSLVKVKLEE 425


>gi|317056417|ref|YP_004104884.1| MiaB-like tRNA modifying enzyme [Ruminococcus albus 7]
 gi|315448686|gb|ADU22250.1| MiaB-like tRNA modifying enzyme [Ruminococcus albus 7]
          Length = 434

 Score =  214 bits (546), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 140/449 (31%), Positives = 234/449 (52%), Gaps = 22/449 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + F  ++GC++N Y++  + + F  +G      +  AD+ V+N+C + E+A  K    L 
Sbjct: 2   KIFYYTFGCKVNQYETENIRERFEQEGDTAAADIASADVCVINSCTVTEQADSKCMQMLR 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER-AR 144
           RIR +    +        V+AGC  QA  ++  + +   +++VG     R+PE  +R  +
Sbjct: 62  RIRKVSPRAV-------TVLAGCFPQAFSDKAEKLTE-CDIIVGTDDKGRIPEFTDRFMK 113

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRG--VTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            G+R++        K E+    D   N+  G    +++ IQ+GCD +C++C++PY RG  
Sbjct: 114 TGERIISIR-----KHEKGEKFDTMTNKCSGEKTRSYIKIQDGCDCYCSYCIIPYARGHV 168

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            S+ +  VV EA + I  G  E+ L G N+  + G+ L  E+ T +D++  +  + G  R
Sbjct: 169 RSKPMEDVVREASENIAAGHKELILTGINL-CFYGRDL-SERPTLTDVVEKVCSLDGEFR 226

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R  +  P  M    IK    LD L P+ HL +QSG D  LK+MNRR+ +  Y  +   I
Sbjct: 227 VRLGSIEPEMMLADDIKRLSVLDKLCPHFHLSLQSGCDSTLKNMNRRYDSSGYASLCATI 286

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+  PD A+++D +VGFPGE +  F  ++  V++I +A+A  F YS R GT   +  +QV
Sbjct: 287 RNYFPDCALTTDIMVGFPGEDEKAFEESLSFVEEIAFAEAHIFPYSRRAGTKADSFTDQV 346

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL-- 440
            +++K ER   + +   E +  F   CVG++ +VL E+   E     G +P   +V +  
Sbjct: 347 PQHIKHERAKRMAEVCAESKSGFLAGCVGKVFDVLFERE-TEADWHSGHAPNYVTVKVKR 405

Query: 441 NSKNHNI-GDIIKVRITDVKISTLYGELV 468
           NS + ++   I KVRI        YGE V
Sbjct: 406 NSPSDSLRRQIRKVRIISSDKEVCYGEFV 434


>gi|168179386|ref|ZP_02614050.1| RNA modification enzyme, MiaB family [Clostridium botulinum NCTC
           2916]
 gi|182669715|gb|EDT81691.1| RNA modification enzyme, MiaB family [Clostridium botulinum NCTC
           2916]
          Length = 432

 Score =  214 bits (546), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 137/442 (30%), Positives = 240/442 (54%), Gaps = 22/442 (4%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++NVY++  M + F  QGYE V+  + AD+ V+NTC +     +K    + R R  
Sbjct: 7   TLGCRVNVYETEAMTEKFIKQGYEIVDFNEVADVYVINTCTVTNMGDKKSRQMISRGR-- 64

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK-RV 149
                ++    ++ V GC +Q   EE+ +    V+VV+G +    +   + RA   K +V
Sbjct: 65  -----RQNSKAIIAVVGCYSQIAPEEVSKIDG-VDVVLGTRNKGDIVYWVNRAMEEKNQV 118

Query: 150 VDTDYSVEDK-FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           ++    + +K FE L+I +  Y  K    AFL IQ+GC++FC++C++P+ RG   S+   
Sbjct: 119 IEVKDVLRNKEFEELNIEE--YRDK--TRAFLKIQDGCNRFCSYCLIPFARGAVCSKKPE 174

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
           ++++E +KL  +G  EI L G ++ ++ G  L+G K   + +L  + +++G+ R+R  + 
Sbjct: 175 KIMEEVKKLSKHGFKEIILSGIDIASY-GFDLEG-KYNLTSILEEIDKVEGIERIRIGSI 232

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
            P   ++  I     L    P+ HL +QSG +  LK MNR++T  +Y++I+  +R+    
Sbjct: 233 DPTFFTEEEIIRISKLKRFCPHFHLSLQSGCNETLKRMNRKYTVEQYKEIVHNLRTNIES 292

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           ++I++D IVGFPGET+++F  T + +  I  ++   FK+SPR GT    M  QVD  +K 
Sbjct: 293 VSITTDIIVGFPGETEEEFNKTYEFLRDIKLSKMHVFKFSPRKGTRAEEMKNQVDGKIKE 352

Query: 389 ER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445
           ER   ++ L K L ++   F +  + + + VL E+  KEKG   G +P    +   S   
Sbjct: 353 ERSNKIINLDKDLEKE---FMNKFIEKEMPVLYEQETKEKGIFEGYTPNYIKIYSKSSKD 409

Query: 446 NIGDIIKVRITDVKISTLYGEL 467
             G+II   + +V    + GE+
Sbjct: 410 ITGEIINTTLKEVSKDFIKGEI 431


>gi|168181641|ref|ZP_02616305.1| RNA modification enzyme, MiaB family [Clostridium botulinum Bf]
 gi|237796408|ref|YP_002863960.1| MiaB family RNA modification protein [Clostridium botulinum Ba4
           str. 657]
 gi|182675137|gb|EDT87098.1| RNA modification enzyme, MiaB family [Clostridium botulinum Bf]
 gi|229261767|gb|ACQ52800.1| RNA modification enzyme, MiaB family [Clostridium botulinum Ba4
           str. 657]
          Length = 432

 Score =  214 bits (545), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 137/442 (30%), Positives = 239/442 (54%), Gaps = 22/442 (4%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++NVY++  M + F  QGYE V+  + AD+ V+NTC +     +K    + R R  
Sbjct: 7   TLGCRVNVYETEAMTEKFIKQGYEIVDFNEVADVYVINTCTVTNMGDKKSRQMISRGR-- 64

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK-RV 149
                ++    ++ V GC +Q   EE+ +    V+VV+G +    +   + RA   K +V
Sbjct: 65  -----RQNSKAIIAVVGCYSQIAPEEVSKIDG-VDVVLGTRNKGDIVYWVNRAMEEKNQV 118

Query: 150 VDTDYSVEDK-FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           ++    + +K FE L+I +  Y  K    AFL IQ+GC++FC++C++P+ RG   S+   
Sbjct: 119 IEIKDVLRNKEFEELNIEE--YRDK--TRAFLKIQDGCNRFCSYCLIPFARGAVCSKKPE 174

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
           ++++E  KL  +G  EI L G ++ ++ G  L+G K   + +L  + +++G+ R+R  + 
Sbjct: 175 KIMEEVEKLSKHGFKEIILSGIDIASY-GFDLEG-KYNLTSILEEIDKVEGIERIRIGSI 232

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
            P   ++  I     L    P+ HL +QSG +  LK MNR++T  +Y++I+  +R+    
Sbjct: 233 DPTFFTEEEIIGISKLKRFCPHFHLSLQSGCNETLKRMNRKYTVEQYKEIVHNLRTNIES 292

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           ++I++D IVGFPGET+++F  T + +  I  ++   FK+SPR GT    M  QVD  +K 
Sbjct: 293 VSITTDIIVGFPGETEEEFNKTYEFLKGIKLSKMHVFKFSPRKGTRAEEMKNQVDGKIKE 352

Query: 389 ER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445
           ER   ++ L K L ++   F +  + + + VL E+  KEKG   G +P    +   S   
Sbjct: 353 ERSNKIINLDKDLEKE---FMNKFIEKEMPVLYEQETKEKGIFEGYTPNYIKIYSKSSKD 409

Query: 446 NIGDIIKVRITDVKISTLYGEL 467
             G+II   + +V    + GE+
Sbjct: 410 ITGEIINTTLKEVSKDFIKGEI 431


>gi|227499809|ref|ZP_03929904.1| 2-methylthioadenine synthetase [Anaerococcus tetradius ATCC 35098]
 gi|227218113|gb|EEI83381.1| 2-methylthioadenine synthetase [Anaerococcus tetradius ATCC 35098]
          Length = 431

 Score =  214 bits (545), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 139/445 (31%), Positives = 244/445 (54%), Gaps = 21/445 (4%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           F + + GC++N Y+S  +E++F S+GY++    D AD+ V+NTC +   +  K    + R
Sbjct: 5   FNIITLGCKVNQYESEAVEEIFKSRGYKK--KQDGADIYVINTCTVTNMSDRKSRQMISR 62

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
            R       ++  + ++ V GC +Q + +E+L     V++V+G +    + +L E     
Sbjct: 63  AR-------RDNPEAVIAVMGCYSQVKPDEVLAIEG-VDIVLGSRNKEEVVDLCEDVLQN 114

Query: 147 KRVVDTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
           K  +D   S+ +    E L I     N++    A++ IQ+GC+ +C++C++PY RG  +S
Sbjct: 115 KTAIDRVISLSESKSIEELEI----SNQEDMTRAYMKIQDGCNMYCSYCLIPYARGNIVS 170

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R +  + +EA +L  NG  EI L G +V ++ GK L   K    D++  +++  G+ R+R
Sbjct: 171 RDMESIKEEAIRLAKNGYKEIVLTGIHVASY-GKDLKNGK-RLIDVIEEVAKTDGIERIR 228

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
            ++  PR ++   ++          + HL +QSGSD ILK+MNR++    Y Q +  IR 
Sbjct: 229 LSSMEPRHITKDFLERMKATRKACDHFHLSLQSGSDEILKAMNRKYDTEIYEQKVKLIRE 288

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           V P+  I++D IVGFP ET+++ R T + V KI +++   FKYS R GT  ++M  +VD 
Sbjct: 289 VFPNAGITTDIIVGFPTETEENHRQTKEFVKKIKFSKTHLFKYSKRDGTKAADMKPEVDG 348

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSP-WLQSVVLNSK 443
           NVK +RL  L++  +  + +F    +G+ + VL E      G   G S  +L+  V +  
Sbjct: 349 NVKRQRLKELEEIEKANRENFLKNQIGKTLSVLFESKSDIDGFKSGYSTNYLRVNVKDEI 408

Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468
           ++N  +I  V IT++K   L G+++
Sbjct: 409 SNN--EIRDVLITEIKDDELVGKVL 431


>gi|170758363|ref|YP_001788268.1| RNA modification protein [Clostridium botulinum A3 str. Loch Maree]
 gi|169405352|gb|ACA53763.1| RNA modification enzyme, MiaB family [Clostridium botulinum A3 str.
           Loch Maree]
          Length = 432

 Score =  214 bits (545), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 136/442 (30%), Positives = 240/442 (54%), Gaps = 22/442 (4%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++NVY++  M + F  QGYE V+  + AD+ V+NTC +     +K    + R R  
Sbjct: 7   TLGCRVNVYETEAMTEKFIKQGYEIVDFNEVADVYVINTCTVTNMGDKKSRQMISRGR-- 64

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK-RV 149
                ++    ++ V GC +Q   EE+ +    V+VV+G +    +   + RA   K +V
Sbjct: 65  -----RQNSKAIIAVVGCYSQIAPEEVSKIDG-VDVVLGTRNKGDIVYWVNRAMEEKNQV 118

Query: 150 VDTDYSVEDK-FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           ++    + +K FE L+I +  Y  K    AFL IQ+GC++FC++C++P+ RG   S+   
Sbjct: 119 IEVKDVLRNKEFEELNIEE--YRDK--TRAFLKIQDGCNRFCSYCLIPFARGAVCSKKPE 174

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
           ++++E +KL  +G  EI L G ++ ++ G  L+G K   + +L  + +++G+ R+R  + 
Sbjct: 175 KIMEEVQKLSKHGFKEIILSGIDIASY-GFDLEG-KYNLTSILEEIDKVEGIQRIRIGSI 232

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
            P   ++  I     L    P+ HL +QSG +  LK MNR++T  +Y++I+  +R+    
Sbjct: 233 DPTFFTEEEIMRISKLKRFCPHFHLSLQSGCNETLKRMNRKYTVEQYKEIVHNLRTNIES 292

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           ++I++D IVGFPGET+++F  T + +  I  ++   FK+SPR GT    M  QVD  +K 
Sbjct: 293 VSITTDIIVGFPGETEEEFNKTYEFLRDIKLSKMHVFKFSPRKGTRAEEMKNQVDGKIKE 352

Query: 389 ER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445
           ER   ++ L K L ++   F +  + + + +L E+  KEKG   G +P    +   S   
Sbjct: 353 ERSNKIINLDKDLEKE---FMNKFIEKEMPILYEQETKEKGIFEGYTPNYIKIYSKSSKD 409

Query: 446 NIGDIIKVRITDVKISTLYGEL 467
             G+II   + +V    + GE+
Sbjct: 410 ITGEIINTTLKEVSKDFIKGEI 431


>gi|209528374|ref|ZP_03276821.1| MiaB-like tRNA modifying enzyme YliG [Arthrospira maxima CS-328]
 gi|209491190|gb|EDZ91598.1| MiaB-like tRNA modifying enzyme YliG [Arthrospira maxima CS-328]
          Length = 439

 Score =  214 bits (545), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 137/441 (31%), Positives = 223/441 (50%), Gaps = 27/441 (6%)

Query: 33  GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92
           GC+ N  D+  M  +    GY+  ++ + AD +V+NTC   E A E+    +  I  L  
Sbjct: 13  GCEKNRIDTEHMIGLLAEAGYQVDSNEEAADYVVVNTCSFIESAREES---VNTIVELAE 69

Query: 93  SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDT 152
           +  K      VV+ GC+ Q   E++L   P    VVG   Y+++  ++ R   G RV  +
Sbjct: 70  AHKK------VVITGCMVQHFQEQLLDELPEAVAVVGTGDYHKIVNVINRVEKGDRV--S 121

Query: 153 DYSVEDKFERLSIVDGGYNRKRGVT---AFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209
           + S +  +    I D    R R  T   A+L I EGC+  C FC++P+ RG + SR++  
Sbjct: 122 EISADPTY----IADHTVPRYRTTTEGVAYLRIAEGCNYRCAFCIIPHLRGNQRSRTIES 177

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK-GLVRLRYTTS 268
           +V EA++L D GV E+ L+ Q    + G  + GE    +DL+ +L ++    VR+ Y  +
Sbjct: 178 IVTEAKQLADQGVQELVLISQITTNY-GTDIYGEP-KLADLIRALGKVDVPWVRMHY--A 233

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
           +P  ++  +I A  +    +PYL LP+Q     IL++MNR        QII+ I++  P+
Sbjct: 234 YPTGLTPKVIDAIAETPNFLPYLDLPLQHSHPEILRAMNRPWQGQVNDQIIENIKTAMPN 293

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
             I + FIVGFPGET+  F   +  V +  +     F +SP  GTP   +   V + V  
Sbjct: 294 AVIRTTFIVGFPGETNSHFEHLLKFVKRHEFDHVGVFTFSPEEGTPAYTLPNTVSQAVMD 353

Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVLNSKN 444
            R   L +  +   +  N  C+G++++VL+E+     G+ +GRS    P +  +V    N
Sbjct: 354 ARRDALMQVQQPISLKRNRQCIGEVVDVLVEQENPSTGEFIGRSPRFAPEVDGLVYVEGN 413

Query: 445 HNIGDIIKVRITDVKISTLYG 465
             +G ++ V+ITD  I  LYG
Sbjct: 414 ARLGSLVSVKITDADIYDLYG 434


>gi|302385311|ref|YP_003821133.1| MiaB-like tRNA modifying enzyme [Clostridium saccharolyticum WM1]
 gi|302195939|gb|ADL03510.1| MiaB-like tRNA modifying enzyme [Clostridium saccharolyticum WM1]
          Length = 454

 Score =  214 bits (544), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 136/411 (33%), Positives = 223/411 (54%), Gaps = 39/411 (9%)

Query: 33  GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92
           GC++N Y++  M+ +  + GYE V   + AD+ ++NTC +   A  K    L R + +  
Sbjct: 10  GCKVNSYETEAMQQLLENAGYEIVPFAEGADVYIINTCSVTNIADRKSRQMLHRAKKMNP 69

Query: 93  SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER---ARFG--- 146
             +       VV AGC  QA GEE L++   V++V+G      L  +LE    +R G   
Sbjct: 70  GAV-------VVAAGCYVQAAGEE-LKKDEAVDLVIGNNKKTELVSVLEEYFASRKGPEA 121

Query: 147 -----------KRVVDTDYSVED--KFERLSIVDGGYNRKRGVT-AFLTIQEGCDKFCTF 192
                      K  +D    + D  ++E LSI     NR    T AF+ +Q+GC++FC++
Sbjct: 122 EIACGYPVLPPKAGLDAVIDIGDTREYENLSI-----NRIADHTRAFIKVQDGCNQFCSY 176

Query: 193 CVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLY 252
           C++PYTRG   SR   +VV+E ++L  +G  EI   G +++++     + E+ T  DL+ 
Sbjct: 177 CIIPYTRGRVRSRKPDEVVEEVKRLTASGYQEIVFTGIHLSSYGMDFPEKERLTLLDLVK 236

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
            + E++GL R+R  +  PR +++        L  + P+ HL +QSG D  LK MNR +T 
Sbjct: 237 RVHEVEGLKRIRLGSLEPRIVTEKFAAELARLSKICPHFHLSLQSGCDDTLKRMNRHYTT 296

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
            EY    D +RS   + AI++D IVGFPGE  ++F+ T + ++K+ + +   FKYS R G
Sbjct: 297 EEYFNCCDVLRSAFHNPAITTDVIVGFPGERPEEFKTTREYLEKVQFYEMHVFKYSKRNG 356

Query: 373 TPGSNMLEQVDENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
           T  + M +Q+ E+ K +R   LLCL+K   E  +++ ++ +G   EVL+E+
Sbjct: 357 TKAAVMPDQIPESTKTDRSNELLCLEK---EMSLAYRESWLGCRTEVLLEE 404


>gi|317471887|ref|ZP_07931222.1| MiaB family RNA modification enzyme [Anaerostipes sp. 3_2_56FAA]
 gi|316900660|gb|EFV22639.1| MiaB family RNA modification enzyme [Anaerostipes sp. 3_2_56FAA]
          Length = 439

 Score =  214 bits (544), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 137/434 (31%), Positives = 227/434 (52%), Gaps = 18/434 (4%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V + GC++N Y+S  M DM    G E V+  + AD+ ++NTC +   A  K    L R +
Sbjct: 10  VVTLGCKVNQYESDAMFDMLTDAGAEIVSPKEGADIYIVNTCSVTNIAERKSRQMLHRAK 69

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
            L         D +V   GC AQ  G+E L++ P++++++G      L  +LE+   G R
Sbjct: 70  KLNP-------DTVVAAVGCYAQV-GKEELKKDPLIDLIIGNNKKKDLIPILEKYFEGHR 121

Query: 149 --VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
                 D S   ++E L +     +      A++ +Q+GC++FC++C++PY RG   SR 
Sbjct: 122 RDAEVLDLSSGSEYEALHV----RHLNEHTRAYIKVQDGCNQFCSYCIIPYARGRVRSRD 177

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
           +  V+ E R L  NG  E  + G +V ++ G  LDG+K    DLL  + ++ G+ R+R  
Sbjct: 178 MEDVLSEIRGLARNGCREFVITGIHVCSY-GTDLDGDK-GLIDLLEEIGKVGGVDRIRLG 235

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
           +  P  +++  +K    ++   P+ HL +QSG D  LK MNR++T  E R+  + +R   
Sbjct: 236 SLEPGIITEDFVKRLQSIEQFCPHFHLSLQSGCDATLKRMNRKYTTDEIREKAEILRKAY 295

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
            D A+++D IVGFPGET+++F AT   +++IG  +   FKYS R GT  + M +QV++  
Sbjct: 296 EDPALTTDIIVGFPGETEEEFEATRKFLEEIGLYEMHVFKYSKRAGTRAAVMEDQVNDQE 355

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK--LVGRSPWLQSVVLNSKN 444
           KA R   L     E + +F +  +G    VLIE+  +       VG +     V + S+ 
Sbjct: 356 KARRSAVLIAMNEEHKNAFENRQIGTRRTVLIEEKLRNSSGNFYVGHTKEYVKVAVESEE 415

Query: 445 HNIGDIIKVRITDV 458
                I++V +T +
Sbjct: 416 PLENQIVEVELTGI 429


>gi|95931189|ref|ZP_01313911.1| conserved hypothetical protein [Desulfuromonas acetoxidans DSM 684]
 gi|95132751|gb|EAT14428.1| conserved hypothetical protein [Desulfuromonas acetoxidans DSM 684]
          Length = 453

 Score =  214 bits (544), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 144/451 (31%), Positives = 242/451 (53%), Gaps = 28/451 (6%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ D+  M        +E +   + AD++++NTC     A E+    +     L
Sbjct: 10  SLGCPKNLVDAEVMLGHLPPDRFEIITEEEAADILIINTCAFINDAQEESVDTI-----L 64

Query: 91  KNSRIKEGGDL-LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149
           + +R KE G   +++V GC+ Q   +E+    P V++ +G     R+ EL+++ +  ++ 
Sbjct: 65  EAARFKEEGQCRMLIVTGCLPQRYRDELATELPEVDLFMGTGDAARIVELIDQWQGSQQQ 124

Query: 150 VD-TDYSVEDKFERLSIVDGGYNRKRG---VTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           ++ T  + +  ++ L+       R +     +A++ I EGC   C++C++P  RG+  SR
Sbjct: 125 INATSANPQALYDHLT------PRAKASPFYSAYVKIAEGCSNHCSYCIIPKLRGMLRSR 178

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           S+  +V E +KL+  GV E+ L+ Q++ A+     DG   T  +LL  L +I+ L  LR 
Sbjct: 179 SIDSIVQEVQKLVKEGVKEVNLIAQDITAFGQDRSDG--ATLEELLQELVKIEDLSWLRL 236

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
             ++P  +S+ LI      D +  YL LP+Q  +D IL  MNRR  A + RQ+I R+R  
Sbjct: 237 LYAYPDGISNELIDLIASEDKICNYLDLPLQHINDDILSMMNRRIDAQDSRQLISRLRER 296

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            PD+ + + FIVGFPGETD  ++  ++ V++  + +   F+YS   GT  +N+  QVDE 
Sbjct: 297 IPDMTLRTSFIVGFPGETDAQYQQLLEFVEEGHFDRVGVFRYSREEGTAAANLDNQVDET 356

Query: 386 VKAERLLCLQKKLREQQVSF--NDACVGQIIEVLIEKHGKEKGKLV-GRSPWLQS----- 437
           +K  RL  L K   + +VSF  +   VG+++ VLIE + +E   L+ GRSP         
Sbjct: 357 IKKRRLDKLMKA--QSRVSFRKHRDLVGKVVPVLIEGYSEETELLLQGRSPSQAPDIDGL 414

Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           V + S   ++GDI+ ++ITD     L GE+V
Sbjct: 415 VYVTSGQADVGDIVDLKITDTTEYDLIGEMV 445


>gi|148380907|ref|YP_001255448.1| RNA modification enzyme, MiaB family [Clostridium botulinum A str.
           ATCC 3502]
 gi|153931336|ref|YP_001385215.1| RNA modification protein [Clostridium botulinum A str. ATCC 19397]
 gi|153937595|ref|YP_001388684.1| RNA modification protein [Clostridium botulinum A str. Hall]
 gi|148290391|emb|CAL84518.1| putative radical SAM superfamily protein [Clostridium botulinum A
           str. ATCC 3502]
 gi|152927380|gb|ABS32880.1| RNA modification enzyme, MiaB family [Clostridium botulinum A str.
           ATCC 19397]
 gi|152933509|gb|ABS39008.1| RNA modification enzyme, MiaB family [Clostridium botulinum A str.
           Hall]
          Length = 432

 Score =  214 bits (544), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 137/442 (30%), Positives = 239/442 (54%), Gaps = 22/442 (4%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++NVY++  M + F  QGYE V+  + AD+ V+NTC +     +K    + R R  
Sbjct: 7   TLGCRVNVYETEAMTEKFIKQGYEIVDFNEVADVYVINTCTVTNMGDKKSRQMISRGR-- 64

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK-RV 149
                ++    ++ V GC +Q   EE+ +    V+VV+G +    +   + RA   K +V
Sbjct: 65  -----RQNSKAIIAVVGCYSQIAPEEVSKIDG-VDVVLGTRNKGDIVYWVNRAMEEKNQV 118

Query: 150 VDTDYSVEDK-FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           ++    + +K FE L+I +  Y  K    AFL IQ+GC++FC++C++P+ RG   S+   
Sbjct: 119 IEVKDVLRNKEFEELNIEE--YRDK--TRAFLKIQDGCNRFCSYCLIPFARGAVCSKKPE 174

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
           ++++E  KL  +G  EI L G ++ ++ G  L+G K   + +L  + +++G+ R+R  + 
Sbjct: 175 KIMEEVEKLSKHGFKEIILSGIDIASY-GFDLEG-KYNLTSILEEIDKVEGIERIRIGSI 232

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
            P   ++  I     L    P+ HL +QSG +  LK MNR++T  +Y++I+  +R+    
Sbjct: 233 DPTFFTEEEIIRISKLKRFCPHFHLSLQSGCNETLKRMNRKYTVEQYKEIVHNLRTNIES 292

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           ++I++D IVGFPGET+++F  T + +  I  ++   FK+SPR GT    M  QVD  +K 
Sbjct: 293 VSITTDIIVGFPGETEEEFNKTYEFLRDIKLSKMHVFKFSPRKGTRAEEMKNQVDGKIKE 352

Query: 389 ER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445
           ER   ++ L K L ++   F +  + + + VL E+  KEKG   G +P    +   S   
Sbjct: 353 ERSNKIINLDKDLEKE---FMNKFIEKEMPVLYEQETKEKGIFEGYTPNYIKIYSKSSKD 409

Query: 446 NIGDIIKVRITDVKISTLYGEL 467
             G+II   + +V    + GE+
Sbjct: 410 ITGEIINTTLKEVSKDFIKGEI 431


>gi|300853988|ref|YP_003778972.1| putative oxidoreductase [Clostridium ljungdahlii DSM 13528]
 gi|300434103|gb|ADK13870.1| predicted oxidoreductase [Clostridium ljungdahlii DSM 13528]
          Length = 463

 Score =  214 bits (544), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 144/445 (32%), Positives = 247/445 (55%), Gaps = 29/445 (6%)

Query: 33  GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92
           GC++N Y++  M + F  +GY+ V+  D AD+ V+NTC +     +K    + R R    
Sbjct: 34  GCRVNQYETEAMAEKFIQEGYDIVDFEDYADVYVVNTCTVTNMGDKKSRQMIHRAR---- 89

Query: 93  SRIKEGGDLLVVVAGCVAQAEGEEILRRSPI--VNVVVGPQTYYRLPELLERARF-GKRV 149
              K+  + ++ V GC +Q   +++   S I  V+VV+G +    +   + R  + GK++
Sbjct: 90  ---KKNSNAVIAVVGCYSQIASDKV---SEIEGVDVVLGTRNKGDVVYWVSRVSYEGKKI 143

Query: 150 VDTDYSVEDK-FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           V  +  +++K FE L I D    R R   AFL IQ+GC++FC++C +P+ RG   S+S  
Sbjct: 144 VKVNEVLKNKTFEDLKI-DEYQKRTR---AFLKIQDGCNRFCSYCAIPFARGAVCSKSPD 199

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
           ++++E  KL  N   EI L G ++ ++ G  +DG+      +L  + ++KG+ R+R  + 
Sbjct: 200 KIIEEVEKLSRNNFKEIILSGIHIASY-GTDIDGD-WNLLRILQEIDKVKGIDRVRIGSI 257

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
            P+  ++ +I+    L+ L P+ HL +QSG D  LK MNRR+T  EY +I+  IR+   +
Sbjct: 258 DPQFFTEGVIEKMSKLEKLCPHFHLSLQSGCDETLKRMNRRYTTSEYEKIVYEIRNAIEN 317

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
            +I++D IVGFPGET+++F  T D +++I  ++   FKYS R GT  ++M  QVD   K 
Sbjct: 318 ASITTDIIVGFPGETEEEFNKTYDFLNRIALSKMHVFKYSRRSGTKAADMPGQVDGKTKD 377

Query: 389 ER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GRSP-WLQSVVLNSK 443
           ER   +L L KKL ++   F +  +G  ++VL E+     G    G +P +++ +    K
Sbjct: 378 ERSSKVLELDKKLEKK---FMNKFLGYNMDVLYEQEIDNDGTYFEGYTPNYIKVITKCEK 434

Query: 444 NHNI-GDIIKVRITDVKISTLYGEL 467
             N+ G I+  ++   K   + G+L
Sbjct: 435 ALNLEGKILCTQLEGTKDGYIEGKL 459


>gi|119491288|ref|ZP_01623342.1| hypothetical protein L8106_21864 [Lyngbya sp. PCC 8106]
 gi|119453452|gb|EAW34614.1| hypothetical protein L8106_21864 [Lyngbya sp. PCC 8106]
          Length = 440

 Score =  214 bits (544), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 142/448 (31%), Positives = 232/448 (51%), Gaps = 27/448 (6%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           +   GC+ N  D+  M  +    GY+  ++ + AD +++NTC   E A E+    +  I 
Sbjct: 9   ISHLGCEKNRIDTEHMLGLLVQAGYQVDSNEELADYVIVNTCSFIEAAREES---VQTIV 65

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
           +L  ++ K      VV+ GC+AQ   + +L   P    VVG   Y+++ ++L+R + G+R
Sbjct: 66  DLAEAKKK------VVITGCMAQHFQDALLEELPEAVAVVGTGDYHKIVDVLQRTQQGER 119

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVT---AFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           V   + S E  +    I D    R R  T   A+L + EGC+  C FC++P+ RG + SR
Sbjct: 120 V--REISAEPTY----IADETVPRYRTTTEGVAYLRVAEGCNYRCAFCIIPHLRGNQRSR 173

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK-GLVRLR 264
           S+  +V EA++L + GV EI L+ Q    + G  L GE    ++LL +L ++    VR+ 
Sbjct: 174 SIESIVTEAQQLAEQGVKEIVLISQITTNY-GVDLYGEP-KLAELLRALGKVDIPWVRMH 231

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           Y  ++P  ++  +++A  D   ++PYL LP+Q     IL++MNR        +II++I+ 
Sbjct: 232 Y--AYPTGLTPKVMEAIQDTPNVLPYLDLPLQHSHPEILRAMNRPWQGRVNDEIIEKIKL 289

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             P+  + + FIVGFPGET+  F   +  V +  +     F +S   GTP  ++  QV +
Sbjct: 290 ALPNAVLRTTFIVGFPGETNQHFEHLLQFVKRHHFDHVGVFTFSAEEGTPAYDLPHQVPQ 349

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVL 440
            V   R   L +  +   +  N   VG+I+EVL+E+     GKL+GRS    P +  VV 
Sbjct: 350 AVMDARRDALMQVQQPISLKQNQKSVGEIVEVLVEQEQPSTGKLIGRSGRFAPDVDGVVY 409

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 +G I+ V+ITD  +  LYG  V
Sbjct: 410 VEGMARLGSIVPVKITDADVYDLYGSTV 437


>gi|167751324|ref|ZP_02423451.1| hypothetical protein EUBSIR_02310 [Eubacterium siraeum DSM 15702]
 gi|167655570|gb|EDR99699.1| hypothetical protein EUBSIR_02310 [Eubacterium siraeum DSM 15702]
          Length = 443

 Score =  213 bits (543), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 132/437 (30%), Positives = 233/437 (53%), Gaps = 29/437 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R+ V+++GC++N Y+S  +       GYE+ + +  AD++++N+C + E + +K    + 
Sbjct: 14  RYTVQTFGCKVNQYESASVAKAMDEHGYEKTDDIFTADIVIINSCSVTENSDKKAKQLIN 73

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE--RA 143
           RI++    +I       VV+ GC  QA  E   + S   ++V G +    + ++++    
Sbjct: 74  RIKSSDPMKI-------VVLTGCFPQAFPETASKLS--ADIVTGTEHKDSIADMIDVFTG 124

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
              K+V      V+ ++E+    D G  R     AF+ I++GCD+FC++C++P  RG   
Sbjct: 125 NKVKQVAIPPRPVKKQYEKQKNADMGKTR-----AFIKIEDGCDRFCSYCIIPTARGSVR 179

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-GLDGEKCTFSDLLYSLSEIKGLVR 262
           SRSL  + +E R  +  G  E+ L+G N++ +  + GL       +D + ++  + G+ R
Sbjct: 180 SRSLQDITEEVRFQVSCGHKEMVLVGINLSCYGQEIGL-----RLADAIEAVCSVDGVER 234

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R ++  P  ++D  I        L P+ HL +QSGS   LK MNR +T  EY  I+ R+
Sbjct: 235 VRLSSLEPELLTDEDIARMAAQKKLCPHFHLSLQSGSSATLKRMNRHYTPDEYYDIVLRL 294

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R   PD AI++D +VGF GETD++F+ + +   K+G+A    F YS R GT  +   + +
Sbjct: 295 RKAFPDCAITTDIMVGFAGETDEEFKESCEFAQKVGFAAMHVFTYSIREGTAAARRTDHI 354

Query: 383 DENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV 439
             ++  +R   +  L KKL+E+   +  +CVG+  +VLI++   E+    G +P    V 
Sbjct: 355 AHDIAVKRYHAMSSLAKKLKEE---YFRSCVGKTEKVLIQRRESEE-YANGLTPQYVPVR 410

Query: 440 LNSKNHNIGDIIKVRIT 456
           +   + N  DII V+IT
Sbjct: 411 IYGSDANRQDIITVQIT 427


>gi|253682144|ref|ZP_04862941.1| conserved hypothetical protein [Clostridium botulinum D str. 1873]
 gi|253561856|gb|EES91308.1| conserved hypothetical protein [Clostridium botulinum D str. 1873]
          Length = 433

 Score =  213 bits (543), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 134/441 (30%), Positives = 242/441 (54%), Gaps = 17/441 (3%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++NVY+S  M + F   GYE V   + AD+ V+NTC +   + +K    + R +  
Sbjct: 7   TLGCRVNVYESEAMAEKFLKSGYEVVQFDEVADVYVINTCTVTNMSDKKSRQMISRAK-- 64

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF-GKRV 149
                ++  + ++   GC  Q   +++ +    V+V++G +    +   + RA+   K +
Sbjct: 65  -----RKNPESIIAAVGCYTQIAPDKV-KEIGDVDVILGTRNKGDIVYWVNRAKEEDKTI 118

Query: 150 VDTDYSVEDK-FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           V+ +  +++K FE L+I +  Y  K    AFL IQ+GC+ FC++C++P+ RG   S+   
Sbjct: 119 VEVNDVLKNKKFEELNIEE--YQDK--TRAFLKIQDGCNNFCSYCLIPFARGAVCSKDPE 174

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
            ++DE +KL ++G  EI L G ++ ++ G  L+G+      +L ++ EI+G+ R+R  + 
Sbjct: 175 IIIDEVKKLSEHGFKEIILSGIDIASY-GVDLEGD-WNLLRVLKAIDEIEGINRVRIGSI 232

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
            P   ++ +IK  G L  L P+ HL +QSG +  LK MNR++T  E++ I+  +R    D
Sbjct: 233 GPEFFNEDIIKEIGSLKKLCPHFHLSLQSGCNSTLKRMNRKYTTEEFKNIVVLLRKYVKD 292

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           I+I++D IVGFPGET ++F  T + + +I  ++   FKYSPR GT    M  QVD  +K 
Sbjct: 293 ISITTDIIVGFPGETKEEFEETYNYLKEIKLSKMHIFKYSPRTGTRAEKMENQVDGKIKE 352

Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GRSPWLQSVVLNSKNHNI 447
           ER   L K   + +  F +  + + +++L E+   +K +   G +P    V+  SK+   
Sbjct: 353 ERSKVLLKLNEKNEKEFMNKFIDKDMKILYEQKCSDKEEYYEGYTPNYIKVIAKSKDDIS 412

Query: 448 GDIIKVRITDVKISTLYGELV 468
           G I+  ++ + +     G+++
Sbjct: 413 GKILNTKLMETREEYTIGKII 433


>gi|86609485|ref|YP_478247.1| tRNA modifying protein [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86558027|gb|ABD02984.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 494

 Score =  213 bits (543), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 134/447 (29%), Positives = 232/447 (51%), Gaps = 31/447 (6%)

Query: 33  GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92
           GC+ N  D+  M  +    GY      + A+ +++NTC   E A  +  S L  +  ++ 
Sbjct: 59  GCEKNRVDTEHMLGLLAQAGYRVDGDEESANYVIVNTCSFIEAARRESVSTLMEL-AVQG 117

Query: 93  SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV--- 149
            +I        ++AGC+AQ   EE+L+  P    +VG   Y+++ +++ER   G+RV   
Sbjct: 118 KKI--------IIAGCLAQHFQEELLQEIPEAVAIVGTGDYHQIVQIIERVERGERVNAV 169

Query: 150 -VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
               DY  ++   R       Y       A+L + EGC+  C+FC++P+ RG + SRS+ 
Sbjct: 170 TSSLDYIADETVPR-------YRTTHAPVAYLRVAEGCNYRCSFCIIPHLRGDQRSRSIE 222

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
            ++ EA +L + GV E+ L+ Q +    G  L GE    +DL+ +L +I  +  +R   +
Sbjct: 223 SILREAEQLAEEGVQELILISQ-ITTHYGIDLYGEP-RLADLIRALGKIP-IPWIRMLYA 279

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
           +P  ++  +++A  +    +PYL LP+Q    +ILK+MNR        ++I+R+R   P+
Sbjct: 280 YPTGVTPAVVEAIQETPNFLPYLDLPLQHSHPQILKAMNRPWQGQVNDRVIERLRQALPN 339

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
             + + FIVGFPGET++ F+  +D V +  +     F +SP  GTP  ++  QV E VK 
Sbjct: 340 AVLRTSFIVGFPGETEEHFQHLLDFVQRHQFDHVGVFTFSPEEGTPAYHLPHQVPEAVKQ 399

Query: 389 ERLLCLQKKLREQQVSF--NDACVGQIIEVLIEKHGKEKGKLVGRSPWLQS----VVLNS 442
           ER   L +   +Q ++F  N   VG+++ VL+E+     G+ +GRSP        VV   
Sbjct: 400 ERRARLMQV--QQGITFRRNREQVGRVVPVLLEQENPRTGEWIGRSPRFAPEVDGVVYVQ 457

Query: 443 KNHNIGDIIKVRITDVKISTLYGELVV 469
              ++G ++ V+IT  +   L+G++V 
Sbjct: 458 GQGSLGSLVPVQITRAEPYDLFGQVVA 484


>gi|238066631|sp|Q2JK17|RIMO_SYNJB RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
          Length = 473

 Score =  213 bits (543), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 134/446 (30%), Positives = 232/446 (52%), Gaps = 31/446 (6%)

Query: 33  GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92
           GC+ N  D+  M  +    GY      + A+ +++NTC   E A  +  S L  +  ++ 
Sbjct: 38  GCEKNRVDTEHMLGLLAQAGYRVDGDEESANYVIVNTCSFIEAARRESVSTLMEL-AVQG 96

Query: 93  SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV--- 149
            +I        ++AGC+AQ   EE+L+  P    +VG   Y+++ +++ER   G+RV   
Sbjct: 97  KKI--------IIAGCLAQHFQEELLQEIPEAVAIVGTGDYHQIVQIIERVERGERVNAV 148

Query: 150 -VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
               DY  ++   R       Y       A+L + EGC+  C+FC++P+ RG + SRS+ 
Sbjct: 149 TSSLDYIADETVPR-------YRTTHAPVAYLRVAEGCNYRCSFCIIPHLRGDQRSRSIE 201

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
            ++ EA +L + GV E+ L+ Q +    G  L GE    +DL+ +L +I  +  +R   +
Sbjct: 202 SILREAEQLAEEGVQELILISQ-ITTHYGIDLYGEP-RLADLIRALGKIP-IPWIRMLYA 258

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
           +P  ++  +++A  +    +PYL LP+Q    +ILK+MNR        ++I+R+R   P+
Sbjct: 259 YPTGVTPAVVEAIQETPNFLPYLDLPLQHSHPQILKAMNRPWQGQVNDRVIERLRQALPN 318

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
             + + FIVGFPGET++ F+  +D V +  +     F +SP  GTP  ++  QV E VK 
Sbjct: 319 AVLRTSFIVGFPGETEEHFQHLLDFVQRHQFDHVGVFTFSPEEGTPAYHLPHQVPEAVKQ 378

Query: 389 ERLLCLQKKLREQQVSF--NDACVGQIIEVLIEKHGKEKGKLVGRSPWLQS----VVLNS 442
           ER   L +   +Q ++F  N   VG+++ VL+E+     G+ +GRSP        VV   
Sbjct: 379 ERRARLMQV--QQGITFRRNREQVGRVVPVLLEQENPRTGEWIGRSPRFAPEVDGVVYVQ 436

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
              ++G ++ V+IT  +   L+G++V
Sbjct: 437 GQGSLGSLVPVQITRAEPYDLFGQVV 462


>gi|218132828|ref|ZP_03461632.1| hypothetical protein BACPEC_00689 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991701|gb|EEC57705.1| hypothetical protein BACPEC_00689 [Bacteroides pectinophilus ATCC
           43243]
          Length = 460

 Score =  213 bits (542), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 135/411 (32%), Positives = 222/411 (54%), Gaps = 42/411 (10%)

Query: 33  GCQMNVYDSLRMEDMFFSQGYERVNSMDD--ADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           GC++N Y++  ME M  + GYE V   +D  AD+ V+NTC +   A  K    L + +  
Sbjct: 9   GCKVNSYETEAMEQMLIAAGYEIVPFCEDEKADVYVINTCSVTNIADRKSRQMLHKAK-- 66

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE----RARFG 146
                K+  + +VV AGC  QA G+E L    +V++V+G     RL E++          
Sbjct: 67  -----KQNPNAIVVAAGCYVQARGDE-LAADDMVDIVIGNNRKNRLVEIINDYIGNNSNN 120

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           + VVD   + E  +E L+I    Y+      A++ +Q+GC++FC++C++PYTRG   SR 
Sbjct: 121 EAVVDIAKTHE--YEELNI----YDVCEHTRAYIKVQDGCNQFCSYCIIPYTRGRVRSRR 174

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAW--------------RGKGLDGEKCTFSDLLY 252
              V  E R+L++ G  E  L G +++++              R   + G +    +L+ 
Sbjct: 175 PEDVTAEVRRLVEKGYKEFILAGIHLSSYGIDFEAPCDEAVDYRAANMPGSR--LLELIE 232

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
           ++  ++G+ RLR  +  PR +++  +K   +L+ + P+ H+ +QSG D  LK MNRR+TA
Sbjct: 233 AVCSVEGVKRLRLGSFEPRILTEAFVKRMAELEPVCPHFHISLQSGCDATLKRMNRRYTA 292

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
            EY +    +R   P+ AI++D IVGFP ETD++F  T + +++I + +   FKYS R G
Sbjct: 293 DEYEESCKLLRKYFPNAAITTDVIVGFPQETDEEFAITKEYLERIHFYEMHVFKYSRRKG 352

Query: 373 TPGSNMLEQVDENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
           T    M  QV E VK  R   LL L+K++  +   + ++ +G I EVL E+
Sbjct: 353 TAADRMDGQVPEPVKTARSAGLLELEKRMSRE---YRESALGSIQEVLFEE 400


>gi|153939005|ref|YP_001392232.1| RNA modification protein [Clostridium botulinum F str. Langeland]
 gi|152934901|gb|ABS40399.1| RNA modification enzyme, MiaB family [Clostridium botulinum F str.
           Langeland]
 gi|295320230|gb|ADG00608.1| RNA modification enzyme, MiaB family [Clostridium botulinum F str.
           230613]
          Length = 432

 Score =  213 bits (542), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 137/442 (30%), Positives = 238/442 (53%), Gaps = 22/442 (4%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++NVY++  M + F  QGYE V+  + AD+ V+NTC +     +K    + R R  
Sbjct: 7   TLGCRVNVYETEAMTEKFIKQGYEIVDFNEVADVYVINTCTVTNMGDKKSRQMISRGR-- 64

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK-RV 149
                ++    ++ V GC +Q   EE+ +    V+VV+G +    +   + RA   K +V
Sbjct: 65  -----RQNSKAIIAVVGCYSQIAPEEVSKIDG-VDVVLGTRNKGDIVYWVNRAMEEKNQV 118

Query: 150 VDTDYSVEDK-FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           ++    + +K FE L+I +  Y  K    AFL IQ+GC++FC++C++P+ RG   S+   
Sbjct: 119 IEVKDVLRNKEFEELNIEE--YRDK--TRAFLKIQDGCNRFCSYCLIPFARGAVCSKKPE 174

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
           ++++E  KL  +G  EI L G ++ ++ G  L+G K   + +L  +  ++G+ R+R  + 
Sbjct: 175 KIMEEVEKLSKHGFKEIILSGIDIASY-GFDLEG-KYNLTSILEEIDRVEGIERIRIGSI 232

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
            P   ++  I     L    P+ HL +QSG +  LK MNR++T  +Y++I+  +R+    
Sbjct: 233 DPTFFTEEEIIRISKLKRFCPHFHLSLQSGCNETLKRMNRKYTVEQYKEIVHNLRTNIES 292

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           ++I++D IVGFPGET+++F  T + +  I  ++   FK+SPR GT    M  QVD  +K 
Sbjct: 293 VSITTDIIVGFPGETEEEFNKTYEFLRDIKLSKMHVFKFSPRKGTRAEEMKNQVDGKIKE 352

Query: 389 ER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445
           ER   ++ L K L ++   F +  + + + VL E+  KEKG   G +P    +   S   
Sbjct: 353 ERSNKIINLDKDLEKE---FMNKFIEKEMPVLYEQETKEKGIFEGYTPNYIKIYSKSSKD 409

Query: 446 NIGDIIKVRITDVKISTLYGEL 467
             G+II   + +V    + GE+
Sbjct: 410 ITGEIINTTLKEVSKDFIKGEI 431


>gi|323486989|ref|ZP_08092303.1| hypothetical protein HMPREF9474_04054 [Clostridium symbiosum
           WAL-14163]
 gi|323692033|ref|ZP_08106281.1| MiaB family RNA modification enzyme [Clostridium symbiosum
           WAL-14673]
 gi|323399701|gb|EGA92085.1| hypothetical protein HMPREF9474_04054 [Clostridium symbiosum
           WAL-14163]
 gi|323503956|gb|EGB19770.1| MiaB family RNA modification enzyme [Clostridium symbiosum
           WAL-14673]
          Length = 445

 Score =  213 bits (542), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 146/450 (32%), Positives = 237/450 (52%), Gaps = 28/450 (6%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ D+  M  +    G+   +  ++AD+I++NTC     A E+  + +  +   
Sbjct: 7   SLGCDKNLVDTEMMLGLLNKDGHTFTDDENEADIILINTCCFINDAKEESVNTILEMAEY 66

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
           K S    G    ++V GC+AQ   EEI++  P V+ ++G  TY  +  +L +A  G++ V
Sbjct: 67  KKS----GKCRALIVTGCMAQRYKEEIIKEIPEVDGILGTSTYDEISNVLNKALSGEQAV 122

Query: 151 D-TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209
              D S   +     IV  G     G  AFL I EGC+K CT+C++P  RG   S  + +
Sbjct: 123 CFHDLSALPEVSEKRIVTTG-----GHYAFLKISEGCNKRCTYCIIPSLRGPYRSVPMER 177

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSH 269
           ++ EA +L   GV E+ L+ Q    + G  L G+K    +LL  L+EI G+  LR    +
Sbjct: 178 LLTEAGQLAGQGVKELILVAQETTLY-GTDLYGKK-MLPELLRRLAEIPGIEWLRVQYCY 235

Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329
           P ++++ L++   + + +  YL +P+Q  SDRILKSM R+ +  E ++ I R+R   PDI
Sbjct: 236 PEEITEELVQVIKEEEKVCHYLDIPIQHASDRILKSMGRKTSREELKERIARLREEIPDI 295

Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAE 389
            + +  I GFPGET  D    M+ VD++ + +   F YS    TP ++  +QV E V+AE
Sbjct: 296 VLRTTLISGFPGETPQDHEELMEFVDEMEFDRLGVFAYSAEEDTPAASFPDQVPEEVRAE 355

Query: 390 R---LLCLQKKLREQQVSFNDA--CVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVL 440
           R   L+ LQ     Q ++F  A   VG+I+EV+IE    ++   VGR+    P +  ++ 
Sbjct: 356 RRDELMELQ-----QDIAFEKAESMVGRILEVMIEGKVADENAFVGRTYMDAPGVDGLIF 410

Query: 441 NSKNHNI--GDIIKVRITDVKISTLYGELV 468
            + +  +  GD  +VR+T      L GE++
Sbjct: 411 VNADVPLMSGDFCRVRVTGAADYDLIGEMI 440


>gi|300728328|ref|ZP_07061694.1| tRNA-I(6)A37 modification enzyme MiaB [Prevotella bryantii B14]
 gi|299774440|gb|EFI71066.1| tRNA-I(6)A37 modification enzyme MiaB [Prevotella bryantii B14]
          Length = 285

 Score =  213 bits (541), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 112/291 (38%), Positives = 186/291 (63%), Gaps = 19/291 (6%)

Query: 190 CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK----C 245
           C +C+VP+TRG E SR +  ++ E + L D G  E+TLLGQNVN++ G   +G++     
Sbjct: 1   CHYCIVPFTRGRERSRDVESILREVKDLHDKGFKEVTLLGQNVNSY-GLLPNGKRPENGT 59

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
           +F++LL  ++E    +R+R+TTS+P DM++ +++A  D   L  ++H P QSGSD++LK 
Sbjct: 60  SFAELLRKVAESVPDMRVRFTTSNPEDMTEDILQAIADEPNLCHHIHFPAQSGSDKVLKL 119

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           MNR++T  +Y + ID I  + PD  I++D  VG+  ET++DF+ T+ L+ ++G+  AF F
Sbjct: 120 MNRKYTREKYMKTIDAIHRIIPDCGITTDVFVGYHDETEEDFQQTLSLMKEVGFDSAFMF 179

Query: 366 KYSPRLGTPGSNMLEQVDENVKAE-------RLLCLQKKLREQQVSFNDACVGQIIEVLI 418
           KYS R   PG+   E + +N+  E        L+ LQ ++  +Q   N    G++ E+LI
Sbjct: 180 KYSER---PGTYAAEHLPDNISEEEKIRRLNELISLQTQISAEQ---NKKDEGKVFEILI 233

Query: 419 EKHGK-EKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           E+ GK ++ +L+GR+P  ++V++   NH+IG+ +KV+IT    +TL+GE V
Sbjct: 234 ERFGKRDRNQLMGRTPQNKAVIMAKGNHHIGEFVKVKITGSTSATLFGEEV 284


>gi|91203193|emb|CAJ72832.1| conserved hypothetical protein [Candidatus Kuenenia
           stuttgartiensis]
          Length = 447

 Score =  213 bits (541), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 138/457 (30%), Positives = 235/457 (51%), Gaps = 44/457 (9%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           ++GC++N Y++  + +   ++G+  ++    AD+ V+NTC +   + EK  +++ R++  
Sbjct: 13  TFGCKVNQYETQALRESLIAKGFMEISPEMAADVYVINTCTVTSASDEKSRNYIKRLK-- 70

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILR------------RSPIVNVVVG------PQT 132
                K+     +VV GC A+++   I +             S +  ++VG      PQ 
Sbjct: 71  -----KKSPKSSIVVTGCYAESDAAAIKKIDGVSHVITKADESSLAEIIVGNDDPCIPQI 125

Query: 133 YYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT-AFLTIQEGCDKFCT 191
               P LL+   F K          D   RL+I     +R  G T AFL I++GCD +C+
Sbjct: 126 TSLPPYLLQNNTFQK----------DSIYRLNI-----SRFHGHTRAFLKIEDGCDMYCS 170

Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLL 251
           +C++PY RG   SR    + DEA++LI NG  EI L G ++ A+  +  DG   +   +L
Sbjct: 171 YCIIPYVRGAIKSRKWQDIHDEAKRLIHNGYKEIVLTGIHLGAYGKEMSDG--ISLVKIL 228

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
             LSE  GL R+R ++    +++  L+    +   + P+LH+P+QSG D ILK MNR++T
Sbjct: 229 ERLSEFSGLGRIRLSSIEVNEITPELMHLIAERKTICPHLHIPLQSGDDLILKRMNRKYT 288

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
           A  Y++I+D IRS     AI++D +VGFPGET+  F+ T+D   K GY++   F +S R 
Sbjct: 289 AAYYQEILDTIRSNIKLPAITTDVMVGFPGETERHFQNTVDFCTKAGYSRMHIFPFSIRK 348

Query: 372 GTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVG 430
           GTP ++M          +R   L+        ++    +  I EVL+E +   +  KL G
Sbjct: 349 GTPAASMQNHCASPSITQRKDLLKAHADTLSYAYKKQFLNHIGEVLVEWERDAKTNKLCG 408

Query: 431 RSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
            +     V+ +  +     I+ V+I  ++ S ++G+L
Sbjct: 409 YTERYIKVLFDGPDTLKNSIVPVQIERIERSDVFGKL 445


>gi|172039350|ref|YP_001805851.1| CHP1125-containing protein [Cyanothece sp. ATCC 51142]
 gi|238065329|sp|B1WUD1|RIMO_CYAA5 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|171700804|gb|ACB53785.1| CHP1125-containing protein [Cyanothece sp. ATCC 51142]
          Length = 437

 Score =  213 bits (541), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 141/451 (31%), Positives = 227/451 (50%), Gaps = 33/451 (7%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V   GC+ N  DS  M  +   QGY    + + AD +++NTC   ++A E+    L  + 
Sbjct: 9   VSHLGCEKNRIDSEHMLGILAQQGYSIDANEELADYVIVNTCSFIQEAREESVRTLVELA 68

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
                         ++++GC+AQ   E++L   P    +VG   Y ++ E+++R   G+R
Sbjct: 69  EANKK---------IIISGCMAQHFQEQLLEELPEAVALVGTGDYQKIAEVIQRVETGER 119

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVT---AFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           V  T+ S    F    + D    R R      A+L + EGCD  C FC++P+ RG + SR
Sbjct: 120 V--TEVSQNPTF----VADEMTPRYRTTNEAVAYLRVAEGCDYRCAFCIIPHLRGNQRSR 173

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK-GLVRLR 264
           S+  +V EA++L D GV EI L+ Q    + G  L GE    ++LL +L ++    +R+ 
Sbjct: 174 SIESIVTEAQQLADQGVQEIILISQITTNY-GLDLYGEP-KLAELLRALGKVDIPWIRIH 231

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           Y  ++P  ++  +I A  D   ++PYL LP+Q     ILK+MNR         II+R++ 
Sbjct: 232 Y--AYPTGLTPKVIDAIRDTPNILPYLDLPLQHSHPAILKAMNRPWQGQVNDNIIERLKQ 289

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             P+  + + FIVGFPGET++ F   ++ V +  +     F +SP   TP   M  QV  
Sbjct: 290 SIPNAILRTTFIVGFPGETEEHFEHLINFVQRHEFDHVGVFTFSPEEETPAYQMPNQVPS 349

Query: 385 NVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQS 437
            +   R   L+ +Q+ +  ++   N  CVGQ +EVLIE+      + +GRS    P +  
Sbjct: 350 EIAQARRNYLMEIQQPIAAKK---NQKCVGQTVEVLIEQENPTTQEYIGRSIRFAPEVDG 406

Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           VV       +  II V+ITD  +  LYG+++
Sbjct: 407 VVYVEGEGQLNSIIPVKITDADVYDLYGKVI 437


>gi|205374147|ref|ZP_03226947.1| RNA modification protein [Bacillus coahuilensis m4-4]
          Length = 430

 Score =  213 bits (541), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 140/440 (31%), Positives = 250/440 (56%), Gaps = 27/440 (6%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  +  +F  QGYERV+    +D+ V+NTC +     +K    + R    
Sbjct: 8   TLGCKVNHYETEAIWQLFKDQGYERVDFEKQSDVYVINTCTVTNTGDKKSRQVIRRA--- 64

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               I+   D ++ V GC AQ    EI+   P V++VVG Q   ++ + +E+ +  ++ +
Sbjct: 65  ----IRSNPDAVICVTGCYAQTSPAEIMA-IPGVDIVVGTQDRVKMLDYIEQYKVERQPI 119

Query: 151 DTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           +   ++     +E L  V    +R R   A L IQEGC+ FCTFC++P+ RG+  SR   
Sbjct: 120 NAVGNIMKNRVYEELD-VPAFTDRTR---ASLKIQEGCNNFCTFCIIPWARGLMRSRDPK 175

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKGLVRLRYTT 267
           +V+ +A++L+D G  EI L G +     G G D +    + LL  L +++KGL R+R ++
Sbjct: 176 EVIRQAQQLVDAGYKEIVLTGIHTG---GYGEDMKDYNLALLLRDLETQVKGLKRIRISS 232

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
                ++D +++     ++++ +LH+P+QSGS+ +LK M R++T   + + ++++R   P
Sbjct: 233 IEASQLTDEVMEVIDQSNMVVRHLHIPLQSGSNTVLKRMRRKYTMEFFGERLEKLRKALP 292

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
            +A++SD IVGFPGET+++F  T   + + G+++   F YS R GTP + M +QVDE++K
Sbjct: 293 GLAVTSDVIVGFPGETEEEFLETFHFIKEQGFSELHVFPYSKRTGTPAARMDDQVDEDIK 352

Query: 388 AE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE---KGKLVGRSPWLQSVVLN 441
            E   RL+ L  +L ++  S  +   G+++EV+ E+  KE    G  VG +     +V  
Sbjct: 353 NERVHRLIELSNQLAKEYASRFE---GEVLEVIPEEPFKEDPDSGLYVGYTDNYLKIVFP 409

Query: 442 SKNHNIGDIIKVRITDVKIS 461
           +++  +G ++KV+I    IS
Sbjct: 410 ARDDMVGKLVKVKINKGWIS 429


>gi|150390422|ref|YP_001320471.1| MiaB-like tRNA modifying enzyme YliG [Alkaliphilus metalliredigens
           QYMF]
 gi|238065283|sp|A6TRJ4|RIMO_ALKMQ RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|149950284|gb|ABR48812.1| MiaB-like tRNA modifying enzyme YliG [Alkaliphilus metalliredigens
           QYMF]
          Length = 446

 Score =  212 bits (540), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 144/458 (31%), Positives = 246/458 (53%), Gaps = 33/458 (7%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           +P   +V+S GC  N+ D+  M  +    GY+  N+   AD+I++NTC   E A E+   
Sbjct: 1   MPLSVYVESLGCSKNLIDAEVMLGILNQYGYKLTNNEVKADVIIVNTCGFIEAAKEE--- 57

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            + +I  L   ++K+    L++VAGC+ +   +++L   P V+ +VG   Y+ + +++ +
Sbjct: 58  SINKIIEL--GQLKKDKLKLLIVAGCLGERYQKDLLEELPEVDAIVGTGGYHEIVKVIHQ 115

Query: 143 ARFGKRVV---DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
              G+R+V   D +   ++   R+             +A++ I +GCD +CT+C++P  R
Sbjct: 116 TMKGQRIVEIGDINRPYDETLPRIQTTASH-------SAYIKISDGCDNYCTYCIIPKLR 168

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIK 258
           G   SR +  ++ EA+ L +NGV EI L+ Q+   +   G+D  ++   S LL  LSE++
Sbjct: 169 GKYRSRKMENIIQEAQTLANNGVKEIILIAQDTTRY---GIDLYDEYRLSALLDKLSEVE 225

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           G+  +R    +P  ++D LI    + D +  Y+ +P+Q  S +ILK MNRR +  E   +
Sbjct: 226 GIQWIRILYCYPEMITDELIATIKNNDKVCKYIDIPIQHCSTKILKLMNRRTSKEEIVSL 285

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           I++++   P+I I +  IVGFPGE+++DF      ++ I + +   F YS   GTP + +
Sbjct: 286 IEKLKKNVPNIVIRTSIIVGFPGESEEDFNELKAFIEDIKFDRLGVFTYSQEEGTPAAQL 345

Query: 379 LEQVDENVKAERLLCLQKKLRE--QQVSFND--ACVGQIIEVLIEKHGKEKGKLVGRS-- 432
            EQV   +K  R    QK L E  Q++S N     +GQ IEVLIE+   EK + +GRS  
Sbjct: 346 AEQVPSELKESR----QKILMELQQRISLNKNRLYIGQSIEVLIEEEIAEKTEYLGRSQG 401

Query: 433 --PWLQSVVL--NSKNHNIGDIIKVRITDVKISTLYGE 466
             P +  +V   ++    +G I+KV+I +     L GE
Sbjct: 402 DAPEIDGIVYVKSTVPLCVGQIVKVKIENALEYDLMGE 439


>gi|222055074|ref|YP_002537436.1| MiaB-like tRNA modifying enzyme [Geobacter sp. FRC-32]
 gi|221564363|gb|ACM20335.1| MiaB-like tRNA modifying enzyme [Geobacter sp. FRC-32]
          Length = 438

 Score =  212 bits (540), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 140/445 (31%), Positives = 232/445 (52%), Gaps = 18/445 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           Q   + + GC++N ++S  M +    +G+  V     AD+ V+NTC +  K   +    +
Sbjct: 7   QTVAITTLGCKINQFESAAMAETLGKEGFSIVPFDGAADIYVINTCTVTSKTDAESRRLI 66

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R    +N   K      +VV GC AQ   EE L+  P VN+++G      + E+L+   
Sbjct: 67  RRASR-QNPSAK------IVVTGCYAQVAFEE-LQDMPGVNLILGNSEKKGIAEMLKDLG 118

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
             +RV+ +D S E   ER + ++      R   AFL +Q GCD FC++C+VPY RG   S
Sbjct: 119 ENQRVLVSDISRELN-ERGTRLESFAEHTR---AFLQVQNGCDAFCSYCIVPYARGRSRS 174

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRL 263
            SL + +   R   + G  E+ L G ++ A+   GLD     +  DLL +  + + + R+
Sbjct: 175 VSLEEALAGIRTFAERGFKEVVLTGIHLGAY---GLDLNPPLSLLDLLNAAEKERLVERI 231

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R  +  P ++SD LI        + P+LH+P+QSG DR+LK+MNR ++  ++R +++++ 
Sbjct: 232 RIGSVEPTEVSDALISFLAKSATVCPHLHIPLQSGHDRVLKAMNRNYSTADFRSVMEKLD 291

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           +  P I I +D I GFPGETDD+F+     ++ +  A    F +SPR GTP + M   V 
Sbjct: 292 TDLPSICIGTDIITGFPGETDDEFQDGYRFLESLPLAYFHVFPFSPRSGTPAATMEGHVH 351

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
            +V  ER   L+K   E++ SF  + +G+ ++VL++   +E   L G S     V +   
Sbjct: 352 SSVIKERAKALRKLSEEKKKSFYRSFIGEKLQVLVQT--REGDLLKGLSRNYIPVFMEGD 409

Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468
           +  +     VRIT V+   + GE++
Sbjct: 410 DDLLKTEQLVRITGVEREKVTGEVI 434


>gi|313899567|ref|ZP_07833076.1| ribosomal protein S12 methylthiotransferase RimO [Clostridium sp.
           HGF2]
 gi|312955674|gb|EFR37333.1| ribosomal protein S12 methylthiotransferase RimO [Clostridium sp.
           HGF2]
          Length = 433

 Score =  212 bits (540), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 141/433 (32%), Positives = 221/433 (51%), Gaps = 26/433 (6%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ DS +M  M  S G+E V++ D+A+ I++NTC     A E+    + ++   
Sbjct: 7   SLGCSKNLVDSEKMMGMINSGGHELVHNADEAEAIIINTCGFINSAKEEAIQTIFQMAEY 66

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
           K  R ++     ++V GC+AQ   E++ +  P ++ V+  + Y  L ELL +   G  +V
Sbjct: 67  KKHRCRK-----LIVVGCLAQRYKEQLEQDIPEIDAVISIREYPHLHELLPKLLDGHDLV 121

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
             D     K ER           +  TA+L I EGC   CT+C +P  RG  +S  + Q+
Sbjct: 122 SYD-----KCERKV-------SSKPWTAYLKIAEGCSNHCTYCAIPLIRGDNVSFPIEQL 169

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270
           V+EA++L   GV E+ ++ Q+   + G  L G +    DLL  L EI+G   +R    +P
Sbjct: 170 VEEAKQLAQRGVRELVVIAQDTTKY-GVDLYGRRALL-DLLQQLHEIEGFHWIRILYMYP 227

Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330
            ++   LI+    L  ++PY  +P+Q  S+R+L+ MNRR +  E   ++ +IR       
Sbjct: 228 DEIDARLIEGMAKLPKVLPYFDIPMQHASNRMLQLMNRRGSREEVAALVKKIRETFSYPT 287

Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER 390
           + + FIVGFP E + DF   M  V+ I + +  +F YSP   TP  +M   VDE+VK  R
Sbjct: 288 LRTTFIVGFPTEEEADFSELMQFVEDIHWDRMGAFPYSPEEDTPAYSMDGAVDEDVKEAR 347

Query: 391 LLCLQKKLREQQVSFNDACVGQIIEVLIEKH----GKEKGKLVGRSP-WLQSVVLNSKNH 445
           L  L K+  E  +      VG+IIEVL+E      G  +G+    +P  +  +V+     
Sbjct: 348 LAQLMKRQEEISLENQRRMVGEIIEVLVEDQEGLTGVYRGRGASSAPDEVDGIVMFKSER 407

Query: 446 NI--GDIIKVRIT 456
            I  G  +KVRIT
Sbjct: 408 FIEFGSFVKVRIT 420


>gi|51892771|ref|YP_075462.1| 2-methylthioadenine synthetase [Symbiobacterium thermophilum IAM
           14863]
 gi|81388877|sp|Q67NX5|RIMO_SYMTH RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|51856460|dbj|BAD40618.1| 2-methylthioadenine synthetase [Symbiobacterium thermophilum IAM
           14863]
          Length = 485

 Score =  212 bits (540), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 151/460 (32%), Positives = 238/460 (51%), Gaps = 36/460 (7%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA-EKVYS 82
           P +    S GC  N+ D+  M  +  + GY+  N  ++AD++V+NTC   + A  E V +
Sbjct: 18  PVKVGFISLGCAKNLVDTESMIGLLRNTGYQITNRAEEADVLVVNTCGFIDAAKQESVDA 77

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            L   ++    R +      +VVAGC+    GEE+ R  P ++ +VG   Y R+ E++  
Sbjct: 78  ILEAAQHKTRGRCQA-----LVVAGCMVPRYGEELAREIPEIDALVGTADYPRIGEVVAG 132

Query: 143 ARFGKRV---VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
              G+RV    D D   +  FER+ +   GY      TA+L I EGCD  C FC +P  R
Sbjct: 133 ILAGQRVQQISDPDSITDWNFERV-LATPGY------TAYLKIAEGCDCACAFCSIPLMR 185

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIK 258
           G   SR +  +VDEAR+L   GV E+ ++ Q+   +   GLD   K   + LL  L+++ 
Sbjct: 186 GRHRSRPIESIVDEARRLAGMGVRELVVISQDTTYY---GLDLYRKPMLARLLRELAQVD 242

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           G+  +R   S+P  ++D LI+       ++ YL LP+Q GS+R+L+ MNR   A  Y ++
Sbjct: 243 GIRWIRIHYSYPTRITDELIEVIVTEPKVLNYLDLPLQHGSNRVLRIMNRPANAEGYLRL 302

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           + ++R   PDI + S FI G PGET++DF   +D +    +     F YS   GT    M
Sbjct: 303 VQKLRERVPDICLRSTFIAGHPGETEEDFELLLDFLRACEFDHVGVFAYSQEEGTKAGQM 362

Query: 379 LEQVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-----GKLVG 430
            EQ+ E V+    +R + +Q+++  ++   N   VG+ +EVL+E    +      G+  G
Sbjct: 363 -EQLPEEVRLARRDRAMEVQQEIARRR---NQLQVGRELEVLVEGRSPQGRGWFVGRCYG 418

Query: 431 RSPWLQSVVL----NSKNHNIGDIIKVRITDVKISTLYGE 466
           +SP +  VVL           GD+++VRIT V+   L GE
Sbjct: 419 QSPGIDGVVLFRAPAGAELKPGDMVQVRITGVQDYDLLGE 458


>gi|313888926|ref|ZP_07822586.1| tRNA methylthiotransferase YqeV [Peptoniphilus harei
           ACS-146-V-Sch2b]
 gi|312845099|gb|EFR32500.1| tRNA methylthiotransferase YqeV [Peptoniphilus harei
           ACS-146-V-Sch2b]
          Length = 432

 Score =  212 bits (540), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 124/383 (32%), Positives = 217/383 (56%), Gaps = 20/383 (5%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + + F + + GC++N Y+S  M ++F S+GY +V + D +D+ ++NTC +   +  K   
Sbjct: 1   MEKTFSILTLGCKVNQYESEAMSELFESRGYRQVENDDFSDVYIVNTCTVTNLSDRKSRQ 60

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
           F+ + +       K   + +V V GC +Q   EE+ +    V+VVVG     R+ +L+E 
Sbjct: 61  FIRKSK-------KNNPNSVVAVVGCYSQVSPEEV-KSIEGVDVVVGTTDRNRIVDLIEE 112

Query: 143 ARFGKRVVD--TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           ++     ++   D     +F   +  D   NR R   A++ +Q+GC++FCT+C++P+ RG
Sbjct: 113 SKKNNEKINIVKDLKNVREFANTTNFDSN-NRTR---AYMKVQDGCNRFCTYCIIPFARG 168

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
              SR++   V EAR L D G  EI L G ++ ++   G+D       DL+ +++E+ G+
Sbjct: 169 PIRSRTIEDSVREARTLADRGFKEIVLTGIHIGSF---GMDLGDMRLIDLIEAIAEVDGI 225

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R ++  P  ++D  ++       L  + HL +QSGS+ ILK+MNRR+T  +Y +  +
Sbjct: 226 ERIRLSSVEPIIITDDFMERAVKTGKLCDHFHLSLQSGSNNILKAMNRRYTREDYIEKAN 285

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
            IR+  P   +++D IVGFPGE+ +DF  +M +V ++G+++   FKYS R  T  + M  
Sbjct: 286 IIRNYMPHAGLTADIIVGFPGESQEDFEDSMKIVKEVGFSRIHVFKYSKRKNTKAAVMKN 345

Query: 381 QVDENVKAER---LLCLQKKLRE 400
           Q+D NVK ER   L+ L ++ +E
Sbjct: 346 QIDGNVKKERSEKLIALGEEYQE 368


>gi|325478525|gb|EGC81637.1| tRNA methylthiotransferase YqeV [Anaerococcus prevotii
           ACS-065-V-Col13]
          Length = 431

 Score =  212 bits (540), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 136/444 (30%), Positives = 243/444 (54%), Gaps = 19/444 (4%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           F + + GC++N Y+S  +E++F ++GY++    ++AD+ V+NTC +   +  K    + R
Sbjct: 5   FNIITLGCKVNQYESEAVEEIFEARGYKK--KEENADIYVINTCTVTNMSDRKSRQMISR 62

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
            R       ++  + ++ V GC +Q + EE+ +    V++V+G +    + +L E     
Sbjct: 63  AR-------RDNPEAVIAVMGCYSQVKPEEVSQIEG-VDIVLGSRNKEEVVDLCEDVLQN 114

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVT-AFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           K  +D   S+    E  +I D   + +  +T A++ IQ+GC+ +C++C++PY RG   SR
Sbjct: 115 KGAIDKVLSLS---ETKTIEDLEISNQEAMTRAYMKIQDGCNMYCSYCLIPYARGNISSR 171

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            +  + +EA++L +NG  EI L G +V+++ GK L     +  D++  ++   G+ R+R 
Sbjct: 172 DMESIKNEAKRLAENGYKEIVLTGIHVSSY-GKDLKN-GTSLIDVIEEVANTDGIERIRL 229

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
           ++  PR ++   ++          + HL +QSGSD ILK+MNR++    +++ +D IR V
Sbjct: 230 SSMEPRHITREFLERMKATKKACDHFHLSLQSGSDDILKAMNRKYDTKIFKEKVDLIREV 289

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P+  +++D IVGFP ETD++   T + V  I +A+   FKYS R GT  + M  +VD N
Sbjct: 290 FPNAGLTTDIIVGFPTETDENHIETKNFVKDIKFAKTHLFKYSKRDGTKAATMKPEVDGN 349

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSP-WLQSVVLNSKN 444
           +K ERL  L++  +  +  F +  +G+ + VL E      G   G S  +L+  V +   
Sbjct: 350 IKKERLKELEEIEQVNKREFLEKQIGKTLSVLFESKSDMDGYKSGYSTNYLRVNVKDEIE 409

Query: 445 HNIGDIIKVRITDVKISTLYGELV 468
            N  +I    IT++K   L GELV
Sbjct: 410 DN--EIRNCLITEIKNDELVGELV 431


>gi|282897302|ref|ZP_06305304.1| conserved hypothetical protein [Raphidiopsis brookii D9]
 gi|281197954|gb|EFA72848.1| conserved hypothetical protein [Raphidiopsis brookii D9]
          Length = 439

 Score =  212 bits (539), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 142/452 (31%), Positives = 228/452 (50%), Gaps = 33/452 (7%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           +   GC+ N  D+  +  +    GY    + + AD +++NTC   E A E+    L    
Sbjct: 9   ISHLGCEKNRIDTEHILGLLVEAGYSVDTNEELADYVIVNTCSFIEAAREESVRTL---V 65

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
            L  S  K      +V+AGC+AQ   E++L   P    VVG   Y+++  +LER   G+R
Sbjct: 66  ELAESNKK------IVIAGCMAQHFQEQLLEELPEAVAVVGTGDYHKIVNVLERVERGER 119

Query: 149 V----VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
           V    VD  Y  ++   R      G        A+L + EGCD  C FC++PY RG + S
Sbjct: 120 VKQISVDPTYIADENTPRYRTTTEG-------VAYLRVAEGCDYGCAFCIIPYLRGNQRS 172

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD--GEKCTFSDLLYSLSEIK-GLV 261
           R++  +V EA++L   GV E+ L+ Q    +   GLD  G+    ++L+ +L E+    V
Sbjct: 173 RTIESIVGEAKQLAAQGVKELILISQITTNY---GLDIYGQP-KLAELISALGEVDIPWV 228

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+ Y  ++P  ++  +IKA  +    +PYL LP+Q     IL++MNR         II+R
Sbjct: 229 RMHY--AYPTGITPDVIKAIQETANFLPYLDLPLQHSHPEILRAMNRPWQGRVNDGIIER 286

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I++  P+  + + FIVGFPGET + F   ++  ++  +     F +SP  GTP  N+  Q
Sbjct: 287 IKTALPEAVLRTTFIVGFPGETQEHFDHLLEFTERHQFDHLGVFTFSPEEGTPAYNLPNQ 346

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQS 437
           + + +  ER   L +  +   +  N   VG+I++VLIE+   + G L+GRS    P +  
Sbjct: 347 LPQELMVERRNQLMEIQQPISLHKNWQQVGRIVDVLIEQENPQTGDLIGRSDRFAPEVDG 406

Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
            V      ++G I+ V+IT      LYGE+V+
Sbjct: 407 QVYVQGKASLGTIVPVKITTADAYDLYGEVVM 438


>gi|292670089|ref|ZP_06603515.1| tRNA-I(6)A37 thiotransferase [Selenomonas noxia ATCC 43541]
 gi|292648277|gb|EFF66249.1| tRNA-I(6)A37 thiotransferase [Selenomonas noxia ATCC 43541]
          Length = 472

 Score =  212 bits (539), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 136/394 (34%), Positives = 207/394 (52%), Gaps = 21/394 (5%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N +++  ME +F ++GYE V   + A++ V+NTC +   +  K        R L
Sbjct: 44  TLGCKVNQFETETMEGLFRARGYEIVPFEEAAEVYVINTCSVTHLSDRKS-------RQL 96

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA---RFGK 147
                +   D  + VAGC AQ   EEI R    V VV+G +   ++ + +E A     G 
Sbjct: 97  IRRAARTNPDACIAVAGCYAQVAPEEI-RALAGVRVVIGTKERAQIVDYVEAALQKNAGV 155

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
               TD      FE + +    +  +    AFL I++GC  FCTFC++PY RG   SR L
Sbjct: 156 IGAITDIMQARVFEDIPLRSMPHRTR----AFLKIEDGCQNFCTFCIIPYARGPVKSREL 211

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLL-YSLSEIKGLVRLRY 265
           S V  E   L + G  E+ L G ++ A+   G+D   + T +D    +L E K L RLR 
Sbjct: 212 SAVAREMHLLTEAGFHEVVLTGIHLGAY---GIDLAARPTLADACRTALGEAK-LRRLRL 267

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
            +    ++S  L++          +LHLP+Q+GSD +L++MNR +    + Q+I  +R  
Sbjct: 268 GSLESVELSADLLELIRTEPRFAAHLHLPLQAGSDAVLRAMNRHYDTAAFAQLIADVRRA 327

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P +A+S+D IVGFPGET++DF A MD V  +G+A+   F YSPR GTP +   +QV   
Sbjct: 328 VPGVAVSTDIIVGFPGETEEDFAAGMDFVRAMGFARMHVFPYSPRRGTPAAQRADQVPPA 387

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419
           V+ ER   +Q    E    ++ A +G + EVL E
Sbjct: 388 VRKERAARMQALAEELAQDYHRAALGSVTEVLFE 421


>gi|159030017|emb|CAO90398.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 437

 Score =  212 bits (539), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 143/451 (31%), Positives = 230/451 (50%), Gaps = 33/451 (7%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           +   GC+ N  DS  M  +    GY   N  + AD +++NTC   + A E+    L  + 
Sbjct: 9   ISHLGCEKNRIDSEHMLGLLAKAGYPVDNDEELADYVIVNTCSFIQAAREESVRTLVELA 68

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
                         ++++GC+AQ   +E+L   P    +VG   Y ++ E++ER   G+R
Sbjct: 69  EANKK---------IIISGCMAQHFQDELLTELPEAVAIVGTGDYQKIVEIVERVETGER 119

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVT---AFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           V   + S +  F    I D    R R  T   A+L + EGCD  C FC++P  RG + SR
Sbjct: 120 V--KEVSTDPTF----IADENLPRYRTTTEGVAYLRVAEGCDYRCAFCIIPQLRGDQRSR 173

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK-GLVRLR 264
           S+  +V EAR+L   GV E+ L+ Q    + G  L GE    ++LL +L+E+    +R+ 
Sbjct: 174 SIESIVAEARQLASQGVQELILISQITTNY-GLDLYGEP-KLAELLRALAEVDIPWIRVH 231

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           Y  ++P  ++  +I+A  +   ++PYL LP+Q     IL+ MNR         II+RI+ 
Sbjct: 232 Y--AYPTGLTPKVIEAIRESPNVLPYLDLPLQHSHPDILRGMNRPWQGRVNDGIIERIKQ 289

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG---SNMLEQ 381
             P+  + + FIVGFPGET++ F   ++ V +  +     F +S   GT      N + Q
Sbjct: 290 AIPNAVLRTTFIVGFPGETEEHFSHLLEFVKRHEFDHVGVFTFSAEEGTAAFGLPNPVPQ 349

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQS 437
              + + ERL+  Q+ + E++   N A +GQ ++VLIE+   E G+L+GR    SP +  
Sbjct: 350 AIMDERRERLMLTQQPISERK---NQAYIGQTVDVLIEQENPETGELIGRSARFSPEVDG 406

Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           +V  +    +G I++VRIT      LYGE+V
Sbjct: 407 LVYVTGEAILGAIVQVRITAADTYDLYGEIV 437


>gi|284052700|ref|ZP_06382910.1| MiaB-like tRNA modifying enzyme YliG [Arthrospira platensis str.
           Paraca]
 gi|291570232|dbj|BAI92504.1| tRNA modifying enzyme MiaB-like protein [Arthrospira platensis
           NIES-39]
          Length = 439

 Score =  211 bits (538), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 136/444 (30%), Positives = 223/444 (50%), Gaps = 27/444 (6%)

Query: 33  GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92
           GC+ N  D+  M  +    GY+  ++ + AD +V+NTC   E A E+    +  I  L  
Sbjct: 13  GCEKNRIDTEHMIGLLAEAGYQVDSNEEAADYVVVNTCSFIESAREES---VNTIVELAE 69

Query: 93  SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDT 152
           +  K      VV+ GC+ Q   E++L   P    VVG   Y+++  ++ R   G RV  +
Sbjct: 70  AHKK------VVITGCMVQHFQEQLLDELPEAVAVVGTGDYHKIVNVINRVEKGDRV--S 121

Query: 153 DYSVEDKFERLSIVDGGYNRKRGVT---AFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209
           + S +  +    I D    R R  T   A+L I EGC+  C FC++P+ RG + SR++  
Sbjct: 122 EISADPTY----IADHTVPRYRTTTEGVAYLRIAEGCNYRCAFCIIPHLRGNQRSRTIES 177

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK-GLVRLRYTTS 268
           +V EA++L D GV E+ L+ Q    + G  + GE    +DL+ +L ++    +R+ Y  +
Sbjct: 178 IVTEAKQLADQGVQELVLISQITTNY-GTDIYGEP-KLADLIRALGKVDVPWIRMHY--A 233

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
           +P  ++  +I A  +    +PYL LP+Q     IL++MNR         II+ I++  P+
Sbjct: 234 YPTGLTPKVIDAITETPNFLPYLDLPLQHSHPEILRAMNRPWQGQVNDHIIENIKTAMPN 293

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
             I + FIVGFPGET+  F   +  V +  +     F +SP  GTP   +   V + V  
Sbjct: 294 AVIRTTFIVGFPGETNSHFEHLLKFVKRHEFDHVGVFTFSPEEGTPAYTLDNTVSQAVMD 353

Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVLNSKN 444
            R   L +  +   +  N  C+G++++VL+E+     G+ +GRS    P +  +V    N
Sbjct: 354 ARRDALMQVQQPISLKGNRQCIGEVVDVLVEQENPSTGEFIGRSARFAPEVDGLVYVEGN 413

Query: 445 HNIGDIIKVRITDVKISTLYGELV 468
             +G ++ V+ITD  I  LYG  V
Sbjct: 414 ARLGSLVSVKITDADIYDLYGHTV 437


>gi|317128304|ref|YP_004094586.1| RNA modification enzyme, MiaB family [Bacillus cellulosilyticus DSM
           2522]
 gi|315473252|gb|ADU29855.1| RNA modification enzyme, MiaB family [Bacillus cellulosilyticus DSM
           2522]
          Length = 448

 Score =  211 bits (538), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 133/430 (30%), Positives = 243/430 (56%), Gaps = 20/430 (4%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  +  +F  +GYE+ +    +D+ V+NTC +     +K    + R    
Sbjct: 10  TLGCKVNHYETEAIWQLFQQEGYEKTDFNHSSDVYVINTCTVTNTGDKKSRQVIRRA--- 66

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               I++  + +V V GC AQ    EI+   P V++VVG Q  ++L   +E+ +  +  +
Sbjct: 67  ----IRKNPEAVVCVTGCYAQTSPAEIMA-IPGVDIVVGTQDRHKLIPYIEQYQKEREPI 121

Query: 151 DTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           +   ++     +E L  V    +R R   A L IQEGC+ FCTFC++P+ RG+  SR   
Sbjct: 122 NGVGNIMKARVYEELD-VPAFTDRTR---ASLKIQEGCNNFCTFCIIPWARGLMRSRKPE 177

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
           +V+ +A +L+ +G  EI L G +     G G D +  + ++LL  L ++ GL R+R ++ 
Sbjct: 178 EVIKQAEQLVASGYKEIVLTGIHTG---GYGEDMKDYSLANLLLDLEKVDGLKRIRISSI 234

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
               ++D +I+     + ++ +LH+P+QSGS+ +LK M R++T   + + +++++   P 
Sbjct: 235 EASQITDEVIQVIDQSEKVVNHLHVPLQSGSNSVLKRMRRKYTTAFFYERVEKLKKALPG 294

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           +A++SD IVGFPGET+++F  T + + K+G+++   F YS R GTP + M +QVD++VK 
Sbjct: 295 LAVTSDVIVGFPGETEEEFNETFEFIKKVGFSELHVFPYSKRTGTPAARMDDQVDDDVKN 354

Query: 389 ER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445
           ER   L+ L  +L ++  S  +  V ++I   ++K   + G  VG +     V + +   
Sbjct: 355 ERVHKLIALSTQLAKEYASSYEGEVLEMIPEELDKENPDAGLYVGYTDNYLKVRVKADES 414

Query: 446 NIGDIIKVRI 455
            +G+I+KV+I
Sbjct: 415 IVGEIVKVKI 424


>gi|288555683|ref|YP_003427618.1| RNA modification enzyme, MiaB family [Bacillus pseudofirmus OF4]
 gi|288546843|gb|ADC50726.1| RNA modification enzyme, MiaB family [Bacillus pseudofirmus OF4]
          Length = 449

 Score =  211 bits (538), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 139/443 (31%), Positives = 240/443 (54%), Gaps = 20/443 (4%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  +  +F  +GYE+V     +D+ V+NTC +     +K    + R    
Sbjct: 8   TLGCKVNHYETEAIWQLFKQEGYEKVEYEQTSDVYVINTCTVTNTGDKKSRQVIRRA--- 64

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               I++  D ++ V GC AQ    EI+   P V++VVG Q   ++   +E+ +  +  +
Sbjct: 65  ----IRKNPDAVICVTGCYAQTSPAEIMA-IPGVDIVVGTQDRTKMIGYIEQFKKEREPI 119

Query: 151 DTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           +   ++     +E L  V    +R R   A L IQEGC+ FCTFC++P+ RG+  SR   
Sbjct: 120 NGVGNIMKSRVYEELD-VPAFTDRTR---ASLKIQEGCNNFCTFCIIPWARGLMRSRDPK 175

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
            V+ +A +L++ G  EI L G +     G G D +  + + LL  L ++ GL R+R ++ 
Sbjct: 176 DVIKQATQLVEAGYKEIVLTGIHTG---GYGEDLKDYSLARLLEDLEQVDGLKRIRISSI 232

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
               ++D +I+     + ++ +LH+P+QSGS+ +LK M R++T   + + +DR++ V P 
Sbjct: 233 EASQLTDEVIEVIDRSEKVVRHLHIPLQSGSNTVLKRMRRKYTMEFFAERLDRLKEVLPG 292

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           +A++SD IVGFPGET+++F+ T D + K  +++   F YS R GTP + M +Q+DE VK 
Sbjct: 293 LAVTSDVIVGFPGETEEEFQETFDFIAKHKFSELHVFPYSKRTGTPAARMDDQIDEEVKN 352

Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIE---KHGKEKGKLVGRSPWLQSVVLNSKNH 445
           ER+  L +   +    +     G+++EV+ E   K   E G  +G +     V + + + 
Sbjct: 353 ERVHRLIELSNQLAKEYASQFEGEVLEVIPEERDKENPESGLYIGYTDNYLKVKVKATDE 412

Query: 446 NIGDIIKVRITDVKISTLYGELV 468
            IG I+KV+I         GE V
Sbjct: 413 MIGKIVKVKIAKAGYPYNKGEFV 435


>gi|167757698|ref|ZP_02429825.1| hypothetical protein CLOSCI_00028 [Clostridium scindens ATCC 35704]
 gi|167664580|gb|EDS08710.1| hypothetical protein CLOSCI_00028 [Clostridium scindens ATCC 35704]
          Length = 427

 Score =  211 bits (538), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 135/436 (30%), Positives = 233/436 (53%), Gaps = 23/436 (5%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++  + + GC++N Y++  M+++    GYE V   + AD+ ++NTC +   A  K    L
Sbjct: 2   KKVALHNLGCKVNAYETEAMQELLEQHGYEIVPFKEGADVYIINTCTVTNMADRKSRQML 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL---E 141
            R R +    +       VV  GC  QA+ +EI      +++VVG      + E+L   E
Sbjct: 62  HRARKMNPGAV-------VVACGCYVQAKRDEI---DDCIDIVVGNNRKKDIIEILSEHE 111

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
             + G +    D +  +++E L +     + +    A++ +Q+GC++FC++C++PY RG 
Sbjct: 112 AMQEGVQKELVDINNINEYEELRLSQTAEHTR----AYIKVQDGCNQFCSYCIIPYARGR 167

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
             SRS   V+ E  +L  NG  E+ L G +++++   G+D      S L+ S+ EI+G+ 
Sbjct: 168 VRSRSHDSVIREVEELARNGYKEVVLTGIHLSSY---GVDTGDDLLS-LILSIHEIEGIR 223

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R  +  PR +++   K    L  + P+ HL +QSG D  LK MNR +T+ EY +    
Sbjct: 224 RIRLGSLEPRIITEEFAKTIAGLPKMCPHFHLSLQSGCDATLKRMNRHYTSEEYYEKCVL 283

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R    + A+++D IVGFPGET+++F  +   +DK+ + +   FKYS R GT  + M EQ
Sbjct: 284 LRKYFDNPALTTDVIVGFPGETEEEFAQSKAFIDKVDFYETHVFKYSKRAGTRAAQMEEQ 343

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL--VGRSPWLQSVV 439
           V E+VKA R   L +  R +Q S+ +A VG   EVL+E+    +G++  VG +     + 
Sbjct: 344 VPESVKAVRSNELLELTRRKQASYEEALVGTTQEVLMEEEMICQGEIYQVGHTKEYVKIG 403

Query: 440 LNSKNHNIGDIIKVRI 455
             ++ +    +I V I
Sbjct: 404 QKTEENLTNQLINVEI 419


>gi|170756026|ref|YP_001782588.1| RNA modification protein [Clostridium botulinum B1 str. Okra]
 gi|169121238|gb|ACA45074.1| RNA modification enzyme, MiaB family [Clostridium botulinum B1 str.
           Okra]
          Length = 432

 Score =  211 bits (537), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 136/442 (30%), Positives = 238/442 (53%), Gaps = 22/442 (4%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++NVY++  M + F  QGY+ V+  + AD+ V+NTC +     +K    + R R  
Sbjct: 7   TLGCRVNVYETEAMTEKFIKQGYQIVDFNEVADVYVINTCTVTNMGDKKSRQMISRGR-- 64

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK-RV 149
                ++    ++ V GC +Q   EE+ +    V+VV+G +    +   + RA   K +V
Sbjct: 65  -----RQNSKAIIAVVGCYSQIAPEEVSKIDG-VDVVLGTRNKGDIVYWVNRAMEEKNQV 118

Query: 150 VDTDYSVEDK-FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           ++    + +K FE L+I +  Y  K    AFL IQ+GC++FC++C++P+ RG   S+   
Sbjct: 119 IEVKDVLRNKEFEELNIEE--YRDK--TRAFLKIQDGCNRFCSYCLIPFARGAVCSKKPE 174

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
           ++++E  KL  +G  EI L G ++ ++ G  L+G K   + +L  +  ++G+ R+R  + 
Sbjct: 175 KIMEEVEKLSKHGFKEIILSGIDIASY-GFDLEG-KYNLTSILEEIDRVEGIERIRIGSI 232

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
            P   ++  I     L    P+ HL +QSG +  LK MNR++T  +Y++I+  +R+    
Sbjct: 233 DPTFFTEEEIIRISKLKRFCPHFHLSLQSGCNETLKRMNRKYTVEQYKEIVHNLRTNIES 292

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           ++I++D IVGFPGET+++F  T + +  I  ++   FK+SPR GT    M  QVD  +K 
Sbjct: 293 VSITTDIIVGFPGETEEEFNKTYEFLRDIKLSKMHVFKFSPRKGTRAEGMKNQVDGKIKE 352

Query: 389 ER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445
           ER   ++ L K L ++   F +  + + + VL E+  KEKG   G +P    +   S   
Sbjct: 353 ERSNKIINLDKDLEKE---FMNKFIEKEMPVLYEQETKEKGIFEGYTPNYIKIYSKSSKD 409

Query: 446 NIGDIIKVRITDVKISTLYGEL 467
             G+II   + +V    + GE+
Sbjct: 410 ITGEIINTTLKEVSKDFIKGEI 431


>gi|113477201|ref|YP_723262.1| MiaB-like tRNA modifying protein YliG [Trichodesmium erythraeum
           IMS101]
 gi|123056314|sp|Q10Y85|RIMO_TRIEI RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|110168249|gb|ABG52789.1| MiaB-like tRNA modifying enzyme YliG [Trichodesmium erythraeum
           IMS101]
          Length = 441

 Score =  211 bits (537), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 142/447 (31%), Positives = 229/447 (51%), Gaps = 33/447 (7%)

Query: 33  GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92
           GC+ N  D+  +  +    GYE   + + AD +V+NTC   + A E+    L  +    N
Sbjct: 13  GCEKNRIDTEHIIGLLVQAGYEVDANEELADYVVVNTCSFIQAAREESVKTLVELAE-AN 71

Query: 93  SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDT 152
            +I        V+AGC+AQ   EE+L   P    +VG   Y+++ ++++R   G RV   
Sbjct: 72  KKI--------VIAGCMAQHFPEELLAELPEAIALVGTGDYHKIVDVMQRVEKGDRVK-- 121

Query: 153 DYSVEDKFERLSIVDGGYNRKRGVT---AFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209
               E   E   I D    R R  +   A++ I EGCD  C FC++P+ RG   SR++  
Sbjct: 122 ----EVTAEPTYIADETTPRYRTTSEGVAYVRIAEGCDYRCAFCIIPHLRGKARSRTIES 177

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK-GLVRLRYTTS 268
           +V EA+KL D GV EI L+ Q    + G  + G+    +DLL +L ++    +R+ Y  +
Sbjct: 178 IVVEAQKLADQGVKEIILISQITTNY-GIDIYGQP-KLADLLEALGKVDIPWIRMHY--A 233

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
           +P  ++  +I A  D   ++PYL LP+Q     IL++MNR         II RI++  P+
Sbjct: 234 YPTGLTPKVITAIQDTPNILPYLDLPLQHSHPEILRAMNRPWQGQVNDDIIKRIKTAMPN 293

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV-- 386
             + + FIVGFPGET++     ++ V +  +     F +SP  GTP  N+  Q+ + V  
Sbjct: 294 AVLRTSFIVGFPGETEEHHSHLVEFVKRHEFDHVGVFTFSPEEGTPAYNLPNQLPQEVMD 353

Query: 387 -KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQS----VVLN 441
            + + ++ +Q+ +  QQ   N   VGQ+++VLIE+   + G+L+GRSP        ++  
Sbjct: 354 ARRQEIMEVQQSISWQQ---NQKLVGQLVDVLIEQENPQTGELIGRSPRFSPEVDGLIYV 410

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                +G I+ V ITD  I  LYG L+
Sbjct: 411 KGEARLGCIVPVMITDADIYDLYGCLI 437


>gi|99034378|ref|ZP_01314398.1| hypothetical protein Wendoof_01000800 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 198

 Score =  211 bits (537), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 101/193 (52%), Positives = 140/193 (72%), Gaps = 2/193 (1%)

Query: 275 DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSD 334
           + L  AH +   LMP++HLPVQSGS++IL +MNR+HTA EY +IIDR R ++P+I  SSD
Sbjct: 2   ESLYLAHAEEPKLMPFVHLPVQSGSNKILHAMNRKHTAEEYLEIIDRFRKLKPEIEFSSD 61

Query: 335 FIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCL 394
           FIVGFPGET+ DF  TM LV+K+ YAQA+SFKYSPR GTPG+   +QV E VK ERLL L
Sbjct: 62  FIVGFPGETEKDFEETMKLVEKVRYAQAYSFKYSPRPGTPGAERKDQVPEEVKTERLLRL 121

Query: 395 QKKLREQQVSFNDACVGQIIEVLI-EKHGKEKGKLVGRSPWLQSVVLNSKNHNIGD-IIK 452
           QK + +QQ+ FN + VG+ I VL  +K GK + +++G+SP++QSV ++       D I+ 
Sbjct: 122 QKLISKQQLEFNQSMVGKTIPVLFSDKKGKHQNQIIGKSPYMQSVCIDDSEDKYRDKIVN 181

Query: 453 VRITDVKISTLYG 465
           V++ + + S+L G
Sbjct: 182 VKVLEARQSSLLG 194


>gi|322807272|emb|CBZ04846.1| miab family protein, possibly involved in tRNA or rRNAmodification
           [Clostridium botulinum H04402 065]
          Length = 432

 Score =  211 bits (537), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 136/442 (30%), Positives = 239/442 (54%), Gaps = 22/442 (4%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++NVY++  M + F  QGYE V+  + AD+ V+NTC +     +K    + R R  
Sbjct: 7   TLGCRVNVYETEAMTEKFIKQGYEIVDFNEVADVYVINTCTVTNMGDKKSRQMISRGR-- 64

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK-RV 149
                ++    ++ V GC +Q   EE+ +    V+VV+G +    +   + RA   K +V
Sbjct: 65  -----RQNSKAIIAVVGCYSQIAPEEVSKIDG-VDVVLGTRNKGDIVYWVNRAMEEKNQV 118

Query: 150 VDTDYSVEDK-FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           ++    + +K FE L+I +  Y  K    AFL IQ+GC++FC++C++P+ RG   S+   
Sbjct: 119 IEVKDVLRNKEFEELNIEE--YRDK--TRAFLKIQDGCNRFCSYCLIPFARGAVCSKKPE 174

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
           ++++E +KL  +G  EI L G ++ ++ G  L+G K   + +L  + +++G+ R+R  + 
Sbjct: 175 KIMEEVKKLSKHGFKEIILSGIDIASY-GFDLEG-KYNLTSILEEIDKVEGIERIRIGSI 232

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
            P   ++  I     L    P+ HL +QSG +  LK MNR++T  +Y++I+  +R+    
Sbjct: 233 DPTFFTEEEIIRISKLKRFCPHFHLSLQSGCNETLKRMNRKYTVEQYKEIVHNLRTNIES 292

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           ++I++D IVGFP ET+++F  T + +  I  ++   FK+SPR GT    M  QVD  +K 
Sbjct: 293 VSITTDIIVGFPRETEEEFNKTYEFLRDIKLSKMHVFKFSPRKGTRAEEMKNQVDGKIKE 352

Query: 389 ER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445
           ER   ++ L K L ++   F +  + + + VL E+  KEKG   G +P    +   S   
Sbjct: 353 ERSNKIINLDKDLEKE---FMNKFIEKEMPVLYEQETKEKGIFEGYTPNYIKIYSKSSKD 409

Query: 446 NIGDIIKVRITDVKISTLYGEL 467
             G+II   + +V    + GE+
Sbjct: 410 ITGEIINTTLKEVSKDFIKGEI 431


>gi|169333944|ref|ZP_02861137.1| hypothetical protein ANASTE_00330 [Anaerofustis stercorihominis DSM
           17244]
 gi|169259509|gb|EDS73475.1| hypothetical protein ANASTE_00330 [Anaerofustis stercorihominis DSM
           17244]
          Length = 408

 Score =  211 bits (537), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 130/429 (30%), Positives = 229/429 (53%), Gaps = 25/429 (5%)

Query: 44  MEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLV 103
           M ++F + GYE V+  + AD+ V+NTC +  ++  K    + R++       K+  + + 
Sbjct: 1   MIELFKTNGYEIVDPAEKADVYVINTCAVTNESERKSKQIVRRLK-------KQNENAVT 53

Query: 104 VVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVED---KF 160
           V+ GC A++  EE  ++    ++V G     ++ + +   +  +  V   Y++E+   +F
Sbjct: 54  VLTGCFAESNFEE-AKKVDSADIVCGTHKREKIIDYINEFKAKQNKV---YNLEEDSREF 109

Query: 161 ERLSIVD-GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLID 219
           ++  I    G +R     AF+ +Q+GC+ FCT+C++PY RGI  + S+ +V+ +   L  
Sbjct: 110 DKAGITTYDGKSR-----AFIKVQDGCNMFCTYCIIPYARGILKNASVEKVLSQIDALSK 164

Query: 220 NGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIK 279
            G  E+ + G +V +++     GE     DLL  + +   + R+R  +  P+ ++D  +K
Sbjct: 165 KGYREVVITGIHVASYKADT--GE--NLIDLLELIDKENKIDRIRLGSLEPKLLTDTFLK 220

Query: 280 AHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGF 339
              +L    P+ H+ +QSG D+ LK MNR++T  EY +I+ R+R+   +  I++D IVGF
Sbjct: 221 RLSELKSFCPHFHISLQSGCDKTLKEMNRKYTTKEYMEIVKRVRTYFDNPGITTDIIVGF 280

Query: 340 PGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLR 399
           P ETD+DF  T D  DK+G++    F YSP+ GTP S M  Q+ + VK +R   L+  + 
Sbjct: 281 PNETDEDFEVTKDFTDKVGFSYVHIFPYSPKHGTPASEMENQIPKEVKTKRAKELKDVME 340

Query: 400 EQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVK 459
            ++  F +  +G+  +VLIEK   E     G S     V + S       I+ V+ITD  
Sbjct: 341 NKREDFLNNMIGKKEKVLIEKKL-EDNIYEGYSENYIYVEVKSDKDIFNQIVNVKITDKT 399

Query: 460 ISTLYGELV 468
            + L GE++
Sbjct: 400 QTHLRGEII 408


>gi|166365636|ref|YP_001657909.1| hypothetical protein MAE_28950 [Microcystis aeruginosa NIES-843]
 gi|238066406|sp|B0JJS5|RIMO_MICAN RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|166088009|dbj|BAG02717.1| hypothetical protein MAE_28950 [Microcystis aeruginosa NIES-843]
          Length = 437

 Score =  211 bits (537), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 141/451 (31%), Positives = 231/451 (51%), Gaps = 33/451 (7%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           +   GC+ N  DS  M  +    GY   N  + AD +++NTC   + A E+    L  + 
Sbjct: 9   ISHLGCEKNRIDSEHMLGLLAKAGYPVDNDEELADYVIVNTCSFIQAAREESVRTLVELA 68

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
                         ++++GC+AQ   +E+L   P    +VG   Y ++ E++ER   G+R
Sbjct: 69  EANKK---------IIISGCMAQHFQDELLTELPEAVAIVGTGDYQKIVEIVERVETGER 119

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVT---AFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           V   + S +  F    I D    R R  +   A+L + EGCD  C FC++P  RG + SR
Sbjct: 120 V--KEVSADPTF----IADENLPRYRTTSEGVAYLRVAEGCDYRCAFCIIPQLRGDQRSR 173

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK-GLVRLR 264
           S+  +V EAR+L   GV E+ L+ Q    + G  L GE    ++LL +L E+    +R+ 
Sbjct: 174 SIESIVAEARQLASQGVQELILISQITTNY-GLDLYGEP-KLAELLRALGEVDIPWIRVH 231

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           Y  ++P  ++  +I+A  +   ++PYL LP+Q     IL+ MNR         II+RI+ 
Sbjct: 232 Y--AYPTGLTPKVIEAIRETPNVLPYLDLPLQHSHPDILRGMNRPWQGRVNDGIIERIKQ 289

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             P+  + + FIVGFPGET++ F   ++ V +  +     F +S   GT   ++ + V +
Sbjct: 290 AIPNAVLRTTFIVGFPGETEEHFSHLLEFVKRHEFDHVGVFTFSAEEGTAAFDLPDPVPQ 349

Query: 385 NV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQS 437
            +   + ERL+  Q+ + E++   N A +GQ ++VLIE+   E G+L+GR    SP +  
Sbjct: 350 AIMDERRERLMLTQQPISERK---NQAYIGQTVDVLIEQENPETGELIGRSARFSPEVDG 406

Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           +V  +    +G I++VRIT      LYGE+V
Sbjct: 407 LVYVTGEAILGAIVQVRITAADTYDLYGEIV 437


>gi|226324718|ref|ZP_03800236.1| hypothetical protein COPCOM_02504 [Coprococcus comes ATCC 27758]
 gi|225207166|gb|EEG89520.1| hypothetical protein COPCOM_02504 [Coprococcus comes ATCC 27758]
          Length = 446

 Score =  211 bits (537), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 147/458 (32%), Positives = 234/458 (51%), Gaps = 38/458 (8%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ DS  M  +    G++ V+    AD+I++NTC     A E+    +  + +L
Sbjct: 7   SLGCDKNLVDSEVMLGILAKDGHQMVDDETMADVIIINTCCFIHDAKEESIQNILEMADL 66

Query: 91  KNS-RIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL---------L 140
           K + R+K      ++V GC+AQ   EEI++  P V+ V+G  +Y  +  +         +
Sbjct: 67  KKTGRLK-----ALIVTGCLAQRYKEEIIQEIPEVDAVLGTTSYEEIAHVIDGVLSDSPM 121

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           ER      + D DY       R+    G +       A+L I EGCDK CT+C++P  RG
Sbjct: 122 ERGDVRLTMKDVDYLPVTDTHRMVTTGGHF-------AYLKIAEGCDKHCTYCIIPKVRG 174

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
              S  +  +++EA+ L D GV E+ L+ Q    + G  L GEK     LL +L +I GL
Sbjct: 175 DFRSVPMEHLLEEAQNLADGGVKELILVAQETTMY-GTDLYGEK-RLPQLLRALCKISGL 232

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
             +R    +P +++D LI+   +   +  YL LP+Q  SD ILK M RR +  +  + I+
Sbjct: 233 RWIRILYCYPEEITDELIQVIKEEPKICHYLDLPIQHASDGILKRMGRRTSRAQLIETIE 292

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R   PDIA+ +  I GFPGET +     MD VD++ + +   F YSP   TP ++M +
Sbjct: 293 KLRREIPDIALRTTLITGFPGETQEQHEELMDFVDQMEFDRLGVFTYSPEEDTPAASMPD 352

Query: 381 QVDENVKAERLLCLQKKLRE--QQVSFNDAC--VGQIIEVLIEKHGKEKGKLVGRS---- 432
           Q+ E VK ER    Q +L E  Q + F+ A   +G+ + V+IE    ++   VGR+    
Sbjct: 353 QIPEEVKEER----QAELMELQQDIVFDQAEDRIGEELLVMIEGKVADENAYVGRTYRDA 408

Query: 433 PWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468
           P +  ++  + +  +  GD  KV++T      L GEL+
Sbjct: 409 PNVDGLIFVNTSEELMSGDFAKVKVTGSADYDLIGELL 446


>gi|291563947|emb|CBL42763.1| MiaB-like tRNA modifying enzyme [butyrate-producing bacterium
           SS3/4]
          Length = 441

 Score =  211 bits (537), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 134/391 (34%), Positives = 210/391 (53%), Gaps = 17/391 (4%)

Query: 33  GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92
           GC++N Y++  ME +  + GYE V+  + AD+ V+NTC +   A +K    L R +  KN
Sbjct: 10  GCKVNAYETEAMEQLLEAAGYEIVSFEEKADVYVINTCSVTNVADKKSRQMLHRAK-AKN 68

Query: 93  SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVD- 151
                  D +VV AGC  QA  ++ LR    V++++G      L  LL+    GK + + 
Sbjct: 69  P------DAVVVAAGCYVQAAADK-LREDAAVDLIIGNNRKADLVPLLDAWFAGKEIRES 121

Query: 152 -TDYSVEDKFERLSIVDGGYNRKRGVT-AFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209
            TD +  +++E+L I     N++   T AF+ +Q+GC++FC++C++PYTRG   SR    
Sbjct: 122 ITDLAGSNEYEKLHI-----NKQAEHTRAFIKVQDGCNQFCSYCIIPYTRGRVRSRRPED 176

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSH 269
           V +E + L + G  EI L G ++ ++ G     E   F  L+  L EI G+ R+R+ +  
Sbjct: 177 VEEEVKILAEEGYKEIVLTGIHLTSY-GIDFKDEGIDFLTLIRRLHEIDGIERIRFGSLE 235

Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329
           PR +++        L  + P+ HL +QSG D  LK MNR +T  EY    + +R    + 
Sbjct: 236 PRVITEEFASELSRLPKICPHFHLSLQSGCDDTLKRMNRHYTCEEYADRCEILRKHFKNP 295

Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAE 389
           AI++D IVGFP ETD DF  T   ++K+ + +   F YS R GT    M +QV E VK E
Sbjct: 296 AITTDVIVGFPAETDADFETTRKFLEKVHFYEMHVFPYSRRAGTRADRMPDQVPEPVKKE 355

Query: 390 RLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
           R   L K  ++    +  + VG   E+L+E+
Sbjct: 356 RSAILLKLEKKMSGEYRSSFVGTEQEILLEE 386


>gi|330838436|ref|YP_004413016.1| RNA modification enzyme, MiaB family [Selenomonas sputigena ATCC
           35185]
 gi|329746200|gb|AEB99556.1| RNA modification enzyme, MiaB family [Selenomonas sputigena ATCC
           35185]
          Length = 432

 Score =  211 bits (536), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 146/443 (32%), Positives = 232/443 (52%), Gaps = 20/443 (4%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           + + GC++N +++  ME +F  +GY  V   + AD+ V+NTC +     +K    + R R
Sbjct: 6   LTTLGCKVNQFETETMEGLFRQRGYAIVPFDEAADVYVINTCSVTSLGEKKSRQLIRRAR 65

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
            L N R       ++ V GC AQ   EEI R    V VV+G +    + + +ERA     
Sbjct: 66  RL-NERA------VIAVTGCYAQVAPEEI-RSIEGVRVVLGTKERAAIVDHVERAAREAG 117

Query: 149 VVDT--DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           V D   D     +FE + +  G   R R   AFL I+EGC+ FC+FC++PY RG   SR 
Sbjct: 118 VFDGTGDIMHASEFEDIPLF-GAPARTR---AFLKIEEGCENFCSFCIIPYARGPVRSRL 173

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
           L  V  EA KL+  G  EI L G ++  +   G D    T +D + ++  + GL RLR  
Sbjct: 174 LKSVRREAAKLLAMGFKEIVLTGIHLGCY---GRDLGDVTLADAVRAVLSLPGLKRLRLG 230

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
           +    ++SD L+      +    +LHLP+Q+GSD +L++MNR +   ++  +I+R+    
Sbjct: 231 SLESIELSDDLLALLAQEERFAGHLHLPLQAGSDEVLRAMNRHYDTAKFAALIERVERAV 290

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           P +AIS+D IVGFPGET + F  ++  V+++ +A+   F YSPR GTP +    QV E  
Sbjct: 291 PGVAISTDIIVGFPGETQELFEESLAFVERMNFARMHVFPYSPRRGTPAAAFAAQVPEAE 350

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHN 446
           K ER+  +Q    ++  +F+ A +G  + VL E   + +G   G +     V  ++    
Sbjct: 351 KKERVHRMQALAAKKSEAFHAAFLGTEMPVLFET--EREGVTDGLTANYIRVYTDAPVRT 408

Query: 447 IGDIIKVRITDVKISTLYGELVV 469
            GDI  +R+  +    ++GEL+ 
Sbjct: 409 -GDIHAMRLVHLYRDGVWGELLA 430


>gi|125973459|ref|YP_001037369.1| MiaB-like tRNA modifying enzyme YliG [Clostridium thermocellum ATCC
           27405]
 gi|256005355|ref|ZP_05430320.1| MiaB-like tRNA modifying enzyme YliG [Clostridium thermocellum DSM
           2360]
 gi|281417660|ref|ZP_06248680.1| MiaB-like tRNA modifying enzyme YliG [Clostridium thermocellum
           JW20]
 gi|238065327|sp|A3DDZ7|RIMO_CLOTH RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|125713684|gb|ABN52176.1| SSU ribosomal protein S12P methylthiotransferase [Clostridium
           thermocellum ATCC 27405]
 gi|255990674|gb|EEU00791.1| MiaB-like tRNA modifying enzyme YliG [Clostridium thermocellum DSM
           2360]
 gi|281409062|gb|EFB39320.1| MiaB-like tRNA modifying enzyme YliG [Clostridium thermocellum
           JW20]
 gi|316940304|gb|ADU74338.1| MiaB-like tRNA modifying enzyme YliG [Clostridium thermocellum DSM
           1313]
          Length = 453

 Score =  211 bits (536), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 139/460 (30%), Positives = 243/460 (52%), Gaps = 42/460 (9%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ DS  M  +     +E  +  ++A++I++NTC   E A E+  + +  + N 
Sbjct: 9   SLGCPKNLVDSEIMLGLLKKNDFEITSDSEEANVIIVNTCGFIESAKEESINTILEMANY 68

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER-------- 142
           KN   +     +++VAGC+AQ   +EI++  P V+ VVG   Y  + +++E         
Sbjct: 69  KNKNCE-----MLIVAGCLAQRYKDEIIKEMPEVDAVVGVSGYDEIAKVIEEFYSKKNDK 123

Query: 143 -----ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197
                A F K  +  +Y      ERL   + GY       A+L I EGCD  CT+C +PY
Sbjct: 124 NDKEKAVFHKDTLSVEYL---NNERLLSTNSGY-------AYLKISEGCDNRCTYCAIPY 173

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257
            RG   SR +  ++ EA  L   GV E+ L+ Q+V  + GK L G+K    +L+  +S I
Sbjct: 174 IRGPYRSRKMEDIISEAEFLAGKGVKEVILVAQDVTVY-GKDLYGQK-KLVELVREVSGI 231

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
           +G+  +R   ++P ++ + LIK   + + ++ YL +P+Q  SD+ILK M RR T+   R 
Sbjct: 232 EGIEWIRLLYTYPEEIDEELIKEIANNEKVVKYLDIPIQHASDKILKLMGRRSTSEGIRN 291

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
           I+DR+R+  PDI + +  IVGFPGE + DF+   D V K  + +   F YS   GTP  +
Sbjct: 292 ILDRLRAEVPDIVLRTSLIVGFPGEDEKDFKILYDFVRKYEFDRLGVFTYSREEGTPAYD 351

Query: 378 MLEQVDENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK----GKLVG 430
           +  Q+ ++VK  R   ++ LQK++ +++   N++ + ++ + L+E   ++     G+   
Sbjct: 352 LKPQIKKSVKESRRNDIMQLQKEIVQRK---NESRLEKVYKTLVEGVSEDGIFYYGRTYA 408

Query: 431 RSPWLQSVVL--NSKNHNIGDIIKVRITDVKISTLYGELV 468
            +P +   V   +++    G+ + V++ ++    L GE++
Sbjct: 409 EAPDIDGSVYFTSAEPLKFGEFVNVKVLNIDDYDLIGEVI 448


>gi|226950381|ref|YP_002805472.1| RNA modification enzyme, MiaB family [Clostridium botulinum A2 str.
           Kyoto]
 gi|226843573|gb|ACO86239.1| RNA modification enzyme, MiaB family [Clostridium botulinum A2 str.
           Kyoto]
          Length = 432

 Score =  211 bits (536), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 136/442 (30%), Positives = 239/442 (54%), Gaps = 22/442 (4%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++NVY++  M + F +QGYE V+  + AD+ V+NTC +     +K    + R R  
Sbjct: 7   TLGCRVNVYETEAMTEKFINQGYEIVDFNEVADVYVINTCTVTNMGDKKSRQMISRGR-- 64

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK-RV 149
                ++    ++ V GC +Q   EE+ +    V+VV+G +    +   + RA   K +V
Sbjct: 65  -----RQNSKAIIAVVGCYSQIAPEEVSKIDG-VDVVLGTRNKGDIVYWVNRAMEEKNQV 118

Query: 150 VDTDYSVEDK-FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           ++    + +K FE L+I +  Y  K    AFL IQ+GC++FC++C++P+ RG   S+   
Sbjct: 119 IEVKDVLRNKEFEELNIEE--YRDK--TRAFLKIQDGCNRFCSYCLIPFARGAVCSKKPE 174

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
           ++++E  KL  +G  EI L G ++ ++ G  L+G K   + +L  + +++G+ R+R  + 
Sbjct: 175 KIMEEVEKLSKHGFKEIILSGIDIASY-GFDLEG-KYNLTSILEEIDKVEGIERIRIGSI 232

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
            P   ++  I     L    P+ HL +QSG +  LK MNR++T  +Y++I+  +R+    
Sbjct: 233 DPTFFTEEEIIRISKLKRFCPHFHLSLQSGCNETLKRMNRKYTVEQYKEIVHNLRTNIES 292

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           ++I++D IVGFP ET+++F  T + +  I  ++   FK+SPR GT    M  QVD  +K 
Sbjct: 293 VSITTDIIVGFPEETEEEFNKTYEFLRDIKLSKMHVFKFSPRKGTRAEEMKNQVDGKIKE 352

Query: 389 ER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445
           ER   ++ L K L ++   F +  + + + VL E+  KEKG   G +P    +   S   
Sbjct: 353 ERSNKIINLDKDLEKE---FMNKFIEKEMPVLYEQETKEKGIFEGYTPNYIKIYSKSSKD 409

Query: 446 NIGDIIKVRITDVKISTLYGEL 467
             G+II   + +V    + GE+
Sbjct: 410 ITGEIINTTLKEVSKDFIKGEI 431


>gi|317968047|ref|ZP_07969437.1| 2-methylthioadenine synthetase [Synechococcus sp. CB0205]
          Length = 477

 Score =  211 bits (536), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 144/453 (31%), Positives = 231/453 (50%), Gaps = 40/453 (8%)

Query: 33  GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92
           GC+ N  D+  M  +    GY       DA+++V+NTC   + A E+       +R L  
Sbjct: 31  GCEKNRIDTEHMLGLLAEAGYGVSADEADANVVVVNTCSFIQDAREE------SVRTL-- 82

Query: 93  SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDT 152
             + E G  L++ AGC+AQ   EE+L   P    +VG   Y  +  +LER   G+RV   
Sbjct: 83  VELAEQGKELII-AGCLAQHFQEELLESLPEAKAIVGTGDYQHIVSVLERVEAGERV--N 139

Query: 153 DYSVEDKFERLSIVDGGYNRKRGVT---AFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209
             S    F    + D    R R  +   A+L + EGCD  C FC++P+ RG + SR++  
Sbjct: 140 QVSANPTF----VGDENLPRYRTTSEAVAYLKVAEGCDYRCAFCIIPHLRGDQRSRTIES 195

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIK-GLVRLRYTT 267
           +V EAR+L   GV E+ L+ Q    +   GLD   K   ++LL +L E++   +R+ Y  
Sbjct: 196 IVAEARQLAAQGVQELVLISQITTNY---GLDLAGKPQLAELLRALGEVEIPWIRVHY-- 250

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
           ++P  ++  ++ A+ D+  ++PYL LP+Q     +L++MNR   A     ++ RIR   P
Sbjct: 251 AYPTGLTPEVLAAYRDVPNVLPYLDLPLQHSHPDVLRAMNRPWQADVTNGVLARIREQLP 310

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
           D  + + FIVG+PGET++ F+  +D V +  +     F +SP  GTP + +  QV   + 
Sbjct: 311 DAVLRTTFIVGYPGETEEQFQHLLDFVAEQRFDHVGVFTFSPEEGTPAAELPNQVPAEIA 370

Query: 388 AE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVVL 440
           AE   RL+ LQ+ +  ++   N A VG+I++VLIE+     G+++GR    +P +   V 
Sbjct: 371 AERKDRLMALQQPIAAER---NAAWVGRIVDVLIEQENPSSGEMIGRCARFAPEVDGEVR 427

Query: 441 NSKNHN-----IGDIIKVRITDVKISTLYGELV 468
                       G ++ VRIT      L GE+V
Sbjct: 428 VMPGEGGLCAAPGTMVPVRITAADTYDLIGEVV 460


>gi|325677621|ref|ZP_08157273.1| tRNA methylthiotransferase YqeV [Ruminococcus albus 8]
 gi|324110589|gb|EGC04753.1| tRNA methylthiotransferase YqeV [Ruminococcus albus 8]
          Length = 434

 Score =  211 bits (536), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 134/451 (29%), Positives = 238/451 (52%), Gaps = 26/451 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + +  ++GC++N Y++  + + F   G+E V     AD+ V+NTC + E+A  K    L 
Sbjct: 2   KIYYYTFGCKVNQYETEHIRERFTENGHETVRDFSVADVCVINTCTVTEQADSKCMQMLR 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQA---EGEEILRRSPIVNVVVGPQTYYRLPELLE- 141
           R+R       K     ++V+AGC  QA     E +       +++VG +    +PEL++ 
Sbjct: 62  RVR-------KAAPQSVIVLAGCFPQAFQSRAESLAE----CDIIVGTEGKGSIPELVDC 110

Query: 142 RARFGKRVVDTD-YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
             + G+R+V    ++  + F+R++   G  ++ R   A++ IQ+GCD +CT+C++P+ RG
Sbjct: 111 FMKSGERIVAVKPHARGEAFDRMT-NKGDSDKTR---AYIKIQDGCDCYCTYCIIPFARG 166

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
              S+ +  ++ EAR  +  G  E+ L G N+  + G+GL  E+ T +D++  +  I+G 
Sbjct: 167 HLRSKPIGDILTEARDAVSTGHKELILTGINL-CFYGRGL-SEQLTLTDVVERICAIEGD 224

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R  +  P  M +  I+    LD L P+ HL +QSGS   LK MNRR+T  EY ++  
Sbjct: 225 FRVRLGSIEPEMMLEDDIRRLAALDKLCPHFHLSLQSGSASTLKLMNRRYTPAEYEKLCH 284

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
            +R   PD AI++D +VGF  E + +F  ++   ++I +A+A  F YS R GT       
Sbjct: 285 DLREYFPDCAITTDIMVGFSHEGEAEFAESLAFAERIAFAEAHIFPYSRRKGTKADTFDG 344

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440
           QVD + K  R   + +  ++ +  +  +CVG+  +VL E+   E+    G +P   +V +
Sbjct: 345 QVDGHTKHLRAAKMAEVCKKTKAEYLASCVGKTFKVLFERES-EQDWHNGHAPNYVTVKV 403

Query: 441 NSKNHNIG---DIIKVRITDVKISTLYGELV 468
              + ++       +V+IT       +GEL+
Sbjct: 404 PRPSPDVSLRRQFRQVKITSANEEHCFGELI 434


>gi|318042484|ref|ZP_07974440.1| hypothetical protein SCB01_12282 [Synechococcus sp. CB0101]
          Length = 473

 Score =  211 bits (536), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 141/474 (29%), Positives = 238/474 (50%), Gaps = 42/474 (8%)

Query: 13  MVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHI 72
           ++S  + Q            GC+ N  D+  M  +    GY       DA+++V+NTC  
Sbjct: 7   LISHPMSQTSTKPTVAFAHLGCEKNRVDTEHMLGLLAQAGYGVSADESDANVVVVNTCSF 66

Query: 73  REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT 132
            + A E+       +R L    + E G  L++ AGC+AQ   +E+L   P    +VG   
Sbjct: 67  IQDAREE------SVRTLVE--LAEQGKELII-AGCLAQHFQDELLESLPEAKAIVGTGD 117

Query: 133 YYRLPELLERARFGKRV----VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
           Y  +  +LER   G+RV     +  +  ++   R       Y       A+L + EGCD 
Sbjct: 118 YQHIVSVLERVEAGERVKQVSANPTFVADEHLPR-------YRTTSEAVAYLKVAEGCDY 170

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTF 247
            C FC++P+ RG + SR++  +V EA++L   GV E+ L+ Q    +   GLD   K   
Sbjct: 171 RCAFCIIPHLRGDQRSRTIESIVAEAQQLAAQGVKELVLISQITTNY---GLDLAGKPQL 227

Query: 248 SDLLYSLSEIK-GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306
           ++LL +L E++   +R+ Y  ++P  +++ +++A+ ++  ++PYL LP+Q     +L++M
Sbjct: 228 AELLRALGEVEIPWIRVHY--AYPTGLTEAVLEAYREVPNVLPYLDLPLQHSHPEVLRAM 285

Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
           NR   A     ++ RIR   PD  + + FIVG+PGET++ F+  +D V +  +     F 
Sbjct: 286 NRPWQADVTGGVLRRIREQLPDAVLRTTFIVGYPGETEEHFQHLLDFVAEQRFDHVGVFT 345

Query: 367 YSPRLGTPGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK 423
           +SP  GTP + + +QV   V AE   RL+ LQ+ +  ++   N A VG+I++VLIE+   
Sbjct: 346 FSPEEGTPAAELPDQVPAEVAAERKDRLMALQQPIAAER---NAAWVGRIVDVLIEQENP 402

Query: 424 EKGKLVGR----SPWLQSVVLNSKNHN-----IGDIIKVRITDVKISTLYGELV 468
             G+++GR    +P +   V             G ++ VRIT      L GE+V
Sbjct: 403 GTGEMIGRCARFAPEVDGEVRVMPGEGGLCAAPGTMVPVRITAADTYDLIGEVV 456


>gi|303290697|ref|XP_003064635.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226453661|gb|EEH50969.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 530

 Score =  210 bits (535), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 152/483 (31%), Positives = 239/483 (49%), Gaps = 44/483 (9%)

Query: 28  FVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRI 87
           F+++YGCQMNV DS  +  +  S  Y  V+ +D AD +++NTC IR+ A  K++    R+
Sbjct: 28  FIETYGCQMNVSDSEIVASVLQSNRYVVVDDVDAADAVLVNTCAIRDGAEAKIWH---RL 84

Query: 88  RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR--- 144
           R LK          +V V GC+ +    ++L    + ++V GP  Y  LP L++ AR   
Sbjct: 85  RQLKREWKDAKNAPVVGVLGCMGERLKHKLLETDGLADLVAGPDAYRDLPRLIDVARGAW 144

Query: 145 FGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            G   V+   +V+  + E  + V        G +AF++I  GC+  C FC+VP+TRG E 
Sbjct: 145 SGGGSVEAAINVQLRRDETYADVKPVRANDAGPSAFVSIMRGCNNMCAFCIVPFTRGRER 204

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAW----------------RGKGLDG----- 242
           SR  + +VDE ++L+D G  E+ LLGQNVN++                R +G        
Sbjct: 205 SRPRASIVDEVKRLVDEGRKEVVLLGQNVNSYADASGAFYLTLVPIRPRSRGFKSVYKPG 264

Query: 243 ----EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
                   F++LL  ++ +   +R+R+T+ HP+D  D ++        +   LH+P QSG
Sbjct: 265 ARRENALLFAELLDEVAGVDPEMRVRFTSPHPKDFPDDVLNVIASRPNVCKQLHMPAQSG 324

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFI---VGFPGETDDDFRATMDLVD 355
           S  +L+ M R +T   Y  ++ R R   P +A+SSDFI    GF GET+D+   T+ L++
Sbjct: 325 STTVLERMRRGYTREAYVDLVRRARERVPGVAVSSDFIRRVFGFCGETEDEHADTVSLMN 384

Query: 356 KIGYAQAFSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQII 414
            + Y QAF F YS R  T  S ++++ V E  K  RL  +    R      N   +G   
Sbjct: 385 LMRYEQAFMFAYSMREKTAASRHLVDDVPEETKKRRLAEVIAAQRRGAEERNADEIGVTH 444

Query: 415 EVLIEKHGKEK-GKLVGRSPWLQSVVLNSKNHNIGDI-------IKVRITDVKISTLYGE 466
            VLIE   K    +  GR+   + V++ +      D+       + VR+     STL+G 
Sbjct: 445 LVLIEGTSKRSDAEYTGRTCTGKRVIVTAARTREADVDVTPGEYVAVRVEKANASTLFGS 504

Query: 467 LVV 469
            V 
Sbjct: 505 PVA 507


>gi|306821073|ref|ZP_07454691.1| MiaB family tRNA modification enzyme [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
 gi|304550909|gb|EFM38882.1| MiaB family tRNA modification enzyme [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
          Length = 452

 Score =  210 bits (535), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 138/458 (30%), Positives = 236/458 (51%), Gaps = 38/458 (8%)

Query: 33  GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92
           GC++N Y++  +E++F   GY   +  D +D+ ++NTC +   +  K    + R +    
Sbjct: 12  GCKVNQYETNAVEEIFTQNGYTLTDFDDKSDIYIINTCTVTSMSDRKSRQVIRRAK---- 67

Query: 93  SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVD- 151
              K   D +VVV GC AQ + + I++    VN+VVG +   ++ + +++     +VV  
Sbjct: 68  ---KNNKDAVVVVMGCYAQNDPDAIIKIED-VNLVVGTKDKNKIFDEVQKITNHDKVVRV 123

Query: 152 TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVV 211
           T+   E +FE LS+     N +    AF+ IQ+GCD++C++C++PYTRG   SR++  +V
Sbjct: 124 TNIMDELEFENLSVTSYTKNTR----AFVKIQDGCDRYCSYCIIPYTRGRIRSRNIGDIV 179

Query: 212 DEARKLIDNGVCEITLLGQNVNAW-----------------RGKGLDGEKCTFSDLLYSL 254
            E + L DNG  E+ L G ++ ++                 +      E  +  D++  +
Sbjct: 180 KEVQSLSDNGYKEVVLTGIHIASYGKDLKKSKDKLIPIIHSQKDDFIQEDISLIDVIEEV 239

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
           S+IK + R+R  +  P  +SD  ++    ++   P+ HL +QSG D  L+ MNRR+T  E
Sbjct: 240 SKIKDIHRVRIGSVEPIIISDDFLQRLTKIEKFCPHFHLSLQSGCDDTLRRMNRRYTTDE 299

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
           Y+  + +IR      AI++D I GFPGET ++F  T   +  I   +   F +S R GT 
Sbjct: 300 YKNAVLKIRQYFDSPAITTDIITGFPGETQEEFEKTYSYLRDINLYEMHIFPFSRRSGTK 359

Query: 375 GSNMLEQVDENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR 431
             +M  Q+D + K ER   L+ L  K + +   F    +G+I +VL E+  KE+    G 
Sbjct: 360 AYDMKNQIDNDTKHERSEKLIALANKNKNE---FEQNLIGKIFDVLFEQ--KEEQYYHGY 414

Query: 432 SPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
           +     + + S+N   G +I VRI   +   L GEL++
Sbjct: 415 TKNYVKIHVKSENDLSGKLIDVRIIGFEDGRLIGELII 452


>gi|156339127|ref|XP_001620089.1| hypothetical protein NEMVEDRAFT_v1g149213 [Nematostella vectensis]
 gi|156204445|gb|EDO27989.1| predicted protein [Nematostella vectensis]
          Length = 323

 Score =  210 bits (535), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 119/304 (39%), Positives = 178/304 (58%), Gaps = 20/304 (6%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F++SYGCQMN+ DS  +  +   QG+     ++DADL+++NTC IREKA + +   L
Sbjct: 27  KKLFIESYGCQMNMNDSEIVASILAQQGFNTTQHLEDADLVLVNTCSIREKAEQTIRKRL 86

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            +   +K    K+   + V V GC+A+   E+ L    IV++VVGP  Y  LP LL+   
Sbjct: 87  QKYNAVK----KKNTKMKVGVLGCMAERLKEKFLEEEKIVDLVVGPDAYRDLPNLLQEID 142

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G+  V+   S ++ +  ++ V    N   GV+AF++I  GCD  CTFCVVP+TRG E S
Sbjct: 143 EGRDAVNVILSKDETYGDVAPVRLNNN---GVSAFVSITRGCDNMCTFCVVPFTRGRERS 199

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNA--WRGKGL--DGEKCT---------FSDLL 251
           R    +++E + + D    EITLLGQNV++  W G GL  D +K T         F+ LL
Sbjct: 200 RDPQSILEEIQSMADQNFKEITLLGQNVDSYLWYGGGLKKDFKKATEIAQATAVDFAQLL 259

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
              +     +R R++TS+P+DMS  +I        +  Y+HLPVQSGS+++LK+MNR+HT
Sbjct: 260 DMAATRFPKMRFRFSTSNPQDMSLDVIHTMAKHKNICKYIHLPVQSGSNKMLKAMNRQHT 319

Query: 312 AYEY 315
             EY
Sbjct: 320 REEY 323


>gi|170077243|ref|YP_001733881.1| tRNA modifying enzyme MiaB-like protein [Synechococcus sp. PCC
           7002]
 gi|238066620|sp|B1XPZ7|RIMO_SYNP2 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|169884912|gb|ACA98625.1| tRNA modifying enzyme MiaB-like protein [Synechococcus sp. PCC
           7002]
          Length = 439

 Score =  210 bits (535), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 138/450 (30%), Positives = 231/450 (51%), Gaps = 31/450 (6%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA-AEKVYSFLGRI 87
           +   GC+ N  DS  M  +  + GYE   + + AD +++NTC   E A AE V + +   
Sbjct: 9   ISHLGCEKNRIDSEHMIGLLVNAGYEVDANEELADYVIVNTCSFIEDARAESVRTLV--- 65

Query: 88  RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147
             L  +  K      +V++GC+AQ   E++L   P    +VG   Y+++ ++++R   G+
Sbjct: 66  -ELAEANKK------IVISGCMAQHFQEQLLEELPEAVALVGTGDYHKIVDVIQRTEQGE 118

Query: 148 RVVDTD----YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            V +      Y  ++   R       Y       A+L + EGCD  C FC++P+ RG + 
Sbjct: 119 IVKEVSQEITYIADETVPR-------YRTTNEAVAYLRVAEGCDYRCAFCIIPHLRGDQR 171

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK-GLVR 262
           SR +  +V EA++L + GV EI L+ Q    + GK + G K   ++LL +L  +    +R
Sbjct: 172 SRPIESIVAEAKQLAEQGVQEIILISQITTNY-GKDIYG-KPKLAELLRALGGVDVPWIR 229

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           + Y  ++P  ++  +I A  D   ++PYL LP+Q     IL++MNR        +II+ +
Sbjct: 230 IHY--AYPTGLTPEVIAAMRDTPNVIPYLDLPLQHSHPDILRAMNRPWQGRVNDRIIEDL 287

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           +   PD  + + FIVGFPGET++ F+  +D V +  +     F +S   GTP  ++  Q+
Sbjct: 288 KKALPDAILRTTFIVGFPGETEEHFQHLVDFVKRHEFDHVGVFTFSAEEGTPAIDLPNQL 347

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQS----V 438
            ++VK  R   L +  +      N+ CVGQ ++VLIE+     G+L+GRSP        +
Sbjct: 348 PQSVKDSRRDALMEIQQPIAARRNELCVGQTVDVLIEQENPATGELIGRSPRFAPDVDGL 407

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           V  +   ++G I+ V+IT   I  LYG +V
Sbjct: 408 VYVTGEASLGSIVPVQITAADIYDLYGTIV 437


>gi|313905328|ref|ZP_07838694.1| MiaB-like tRNA modifying enzyme [Eubacterium cellulosolvens 6]
 gi|313469798|gb|EFR65134.1| MiaB-like tRNA modifying enzyme [Eubacterium cellulosolvens 6]
          Length = 437

 Score =  210 bits (535), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 137/431 (31%), Positives = 232/431 (53%), Gaps = 18/431 (4%)

Query: 33  GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92
           GC++N Y+   M+ M    GYE V     AD+ V+NTC +   A  K    L + +++  
Sbjct: 13  GCKVNSYELEAMQQMLEKAGYEIVPFEPGADVYVINTCTVTNIADRKSRQMLHKAKSM-- 70

Query: 93  SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-ERARFG-KRVV 150
                  D +VV  GC AQ +GEE L++   +++V+G      L E L + +R G K++ 
Sbjct: 71  -----NPDAVVVAVGCYAQVKGEE-LKKDEAIDLVLGSNCKNDLIEALADYSRTGEKQIQ 124

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
            T++  +  +E L I D      R   AF+ +Q+GC++FCT+C++PY RG   SR ++ V
Sbjct: 125 RTEWDTDKSYEELYI-DRTEEHTR---AFIKVQDGCNQFCTYCIIPYARGRVRSRKIADV 180

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270
            +E ++L  +GV E+ + G +V ++ GK L GE      L+ +++E++G+ R+R  +  P
Sbjct: 181 YEEVKRLAASGVKEVVVTGIHVCSY-GKDL-GEGEDLLALIRAVNEVEGIERIRLGSLEP 238

Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330
             +S+  IKA  ++  + P+ HL +QSG DR LK MNR ++  ++ ++ D IR      A
Sbjct: 239 GSISEDFIKALSEMPKVCPHFHLSLQSGCDRTLKRMNRHYSTADFTEVADWIRKYYEHPA 298

Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER 390
           + +D I GFPGE++ DF    D V+ + + +   F YS R GT  ++  +Q  E VK  R
Sbjct: 299 LCTDVITGFPGESEADFAECRDFVEAVHFFETHVFPYSRRKGTKAADYPDQNTEAVKKAR 358

Query: 391 LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK--LVGRSPWLQSVVLNSKNHNIG 448
              L+   RE++V F    + + I+VL E+  + +GK    G     Q V++        
Sbjct: 359 GKVLRDIDRERRVEFLRYYLRKPIQVLFEEEIEFEGKKYWSGHGREYQKVLVADSRDLTN 418

Query: 449 DIIKVRITDVK 459
           +++ V   D++
Sbjct: 419 EMLTVTPADIR 429


>gi|289523492|ref|ZP_06440346.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
 gi|289503184|gb|EFD24348.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
          Length = 463

 Score =  210 bits (534), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 148/464 (31%), Positives = 247/464 (53%), Gaps = 52/464 (11%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R  +K+ GC+ N+Y++  + D F  +G   V S D  D+ +L +C + + A +K   FL 
Sbjct: 11  RVKIKTLGCRTNIYEAEAIADSFRREGA--VISEDLFDVGILVSCAVTKTAEKKCRQFL- 67

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL------ 139
             R LK    +E  D L+V+ GC  QA  EE L  S   ++ VG +    LP +      
Sbjct: 68  --RQLK----RESPDALIVLCGCYVQALTEEELA-SLGADLYVGNRLKSDLPGIVAKMLN 120

Query: 140 --LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197
             +ER  F K+    D    DK++ L +    ++ +    +F+ +Q+GC++FC++C+VP+
Sbjct: 121 DPIERPLFLKK----DVLSNDKWDALELSRVTFHTR----SFVKVQDGCNRFCSYCIVPF 172

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTF--SDLLYSLS 255
            RG   SRS+ +V +E ++L+D+G  E+ L G ++      GL G  C F   DL+ +LS
Sbjct: 173 LRGRPTSRSVKEVAEEVKRLVDHGCKEVVLTGIHL------GLYGYGCDFDLGDLINALS 226

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
            I+GL RLR+ +  P  +SD LI    + D+   +LH+P+QSG DRIL  M R + A ++
Sbjct: 227 RIEGLRRLRFGSIEPHALSDRLIDVLAESDIFCRHLHVPLQSGDDRILSLMQRGYRAEDF 286

Query: 316 RQIIDRI-RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
             II +I R +  D+ IS+D IVGFPGE +D F+ T++LVD +G  +   F +SPR GT 
Sbjct: 287 INIIRKIRRKLGDDVHISTDIIVGFPGEDEDAFQNTLNLVDALGIGRVHVFPFSPRSGTK 346

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR--- 431
             +M  +++      R++   ++ R     +    + + +++L+E +  EK K + R   
Sbjct: 347 AYDMPGRLEGQTIKSRVVRATERGRLSLQRYAQRWLNRKVDILVEHNDGEKVKGLSRHFL 406

Query: 432 ----------SPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYG 465
                     SP +++     +N  +G   +V + + K   LYG
Sbjct: 407 EVESSLDQTPSPSVEAF----QNGGVGFECEVCVLEAKHGILYG 446


>gi|225389074|ref|ZP_03758798.1| hypothetical protein CLOSTASPAR_02820 [Clostridium asparagiforme
           DSM 15981]
 gi|225044863|gb|EEG55109.1| hypothetical protein CLOSTASPAR_02820 [Clostridium asparagiforme
           DSM 15981]
          Length = 451

 Score =  210 bits (534), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 150/457 (32%), Positives = 240/457 (52%), Gaps = 31/457 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + F  S GC  N+ D+ +M  +   +GY   +   +AD I++NTC     A E+  + + 
Sbjct: 5   KLFCVSLGCDKNLVDTEKMLGLLNREGYAFTDDEGEADAILINTCCFIGDAKEESVNTI- 63

Query: 86  RIRNLKNSRIKEGGDL-LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
               L+ +R+KE G    +VVAGC+AQ   EEIL   P V+ ++G  +   +  +L    
Sbjct: 64  ----LEMARLKEEGRCRALVVAGCLAQRYKEEILEEIPEVDGILGTTSCDEIVNVL-NGI 118

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNR---KRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
            G+          D  E  +   GG NR     G  A L I EGCDK CT+C++PY RG 
Sbjct: 119 LGREKPAPVSCFHDLAEPPT---GGENRVVTTGGYYAHLKIAEGCDKRCTYCIIPYLRGS 175

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
             S  + Q+V EA +L + GV E+ L+ Q    + GK L GEK     LL+ L+++ G+ 
Sbjct: 176 FRSVPMEQLVREAGQLAEQGVKELILVAQETTLY-GKDLYGEK-ALPKLLHELAKVPGIQ 233

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
            +R    +P +++D LI+A    + +  YL +P+Q  SD IL+ M RR    + R++I R
Sbjct: 234 WIRLQYCYPEEITDELIEAIRTEEKVCHYLDIPIQHASDGILRRMGRRTNQAQLREMIAR 293

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R   PDIA+ +  I GFPGET +D    M  VD++ + +   F YS    TP  +  +Q
Sbjct: 294 LRREIPDIALRTTLISGFPGETQEDHEELMAFVDEMEFERLGVFAYSAEEDTPAYSFPDQ 353

Query: 382 VDENVKAER---LLCLQKKLREQQVSF--NDACVGQIIEVLIEKHGKEKGKLVGRS---- 432
           V + VK +R   ++ LQ     Q+++F  ++A VG+++ VLIE    ++   VGR+    
Sbjct: 354 VPQEVKEDRRDEIMQLQ-----QEIAFEKSEAMVGRVLTVLIEGKVVDEPAYVGRTYMDA 408

Query: 433 PWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGEL 467
           P +  ++  + +  +  GD ++VR+T      L GE+
Sbjct: 409 PSVDGLIFVNADVELMSGDFVRVRVTGSAEYDLIGEI 445


>gi|282899323|ref|ZP_06307292.1| conserved hypothetical protein [Cylindrospermopsis raciborskii
           CS-505]
 gi|281195780|gb|EFA70708.1| conserved hypothetical protein [Cylindrospermopsis raciborskii
           CS-505]
          Length = 439

 Score =  210 bits (534), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 143/452 (31%), Positives = 226/452 (50%), Gaps = 33/452 (7%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           +   GC+ N  D+  +  M    GY    + D AD +++NTC   E A E+    L  + 
Sbjct: 9   ISHLGCEKNRIDTEHILGMLVEAGYGVDTNEDLADYVIVNTCSFIEAAREESVRTLVELA 68

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
              N +I        V+AGC+AQ   E++L   P    VVG   Y+ +  +LER   G+R
Sbjct: 69  E-ANKKI--------VIAGCMAQHFQEQLLEELPEAVAVVGTGDYHNIVNVLERVEKGER 119

Query: 149 V----VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
           V    VD  Y  ++   R      G        A+L + EGCD  C FC++PY RG + S
Sbjct: 120 VKQVSVDPIYIADENTPRYRTTTEG-------VAYLRVAEGCDYGCAFCIIPYLRGKQRS 172

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD--GEKCTFSDLLYSLSEIK-GLV 261
           RS+  +V EA++L   GV E+ L+ Q    +   GLD  G+    ++L+ +L E+    V
Sbjct: 173 RSIESIVGEAKQLAAQGVKELILISQITTNY---GLDIYGQP-KLAELIRALGEVDIPWV 228

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+ Y  ++P  ++  +IKA  +    +PYL LP+Q     IL++MNR         II+R
Sbjct: 229 RMHY--AYPTGITPDVIKAIQETANFLPYLDLPLQHSHPEILRAMNRPWQGRVNDGIIER 286

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I++  P   + + FIVGFPGET + F   ++  ++  +     F +SP  GTP  ++  Q
Sbjct: 287 IKTALPKAVLRTTFIVGFPGETQEHFDHLLEFTERHQFDHLGVFTFSPEEGTPAYDLPNQ 346

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQS 437
           + + +  ER   L +  +   +  N   VG+I++VLIE+   + G L+GRS    P +  
Sbjct: 347 LPQELMVERRNQLMEIQQPISLRKNWQQVGKIVDVLIEQENPQTGDLIGRSDRFAPEVDG 406

Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
            V      ++G I+ V+IT      LYGE+V+
Sbjct: 407 QVYVQGKASLGTIVPVKITTADAYDLYGEVVM 438


>gi|218437475|ref|YP_002375804.1| MiaB-like tRNA modifying enzyme YliG [Cyanothece sp. PCC 7424]
 gi|238065330|sp|B7KDB6|RIMO_CYAP7 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|218170203|gb|ACK68936.1| MiaB-like tRNA modifying enzyme YliG [Cyanothece sp. PCC 7424]
          Length = 438

 Score =  210 bits (534), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 137/451 (30%), Positives = 232/451 (51%), Gaps = 33/451 (7%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           +   GC+ N  DS  M  +    GY    + + AD +++NTC   + A E+    L  + 
Sbjct: 9   ISHLGCEKNRIDSEHMLGLLAQAGYPVDANEELADYVIVNTCSFIQSAREESVRTLVELA 68

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
                         V+++GC+AQ   +E+L   P    +VG   Y ++ ++++R   G+R
Sbjct: 69  EANKK---------VIISGCMAQHFQDELLSELPEAVAIVGTGDYQKIVQVIQRVENGQR 119

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVT---AFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           V   + S E  +    I D    R R  +   A+L + EGCD  C+FC++P+ RG + SR
Sbjct: 120 V--KEISSEPTY----IADETVPRYRTTSEGVAYLRVAEGCDYRCSFCIIPHLRGNQRSR 173

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK-GLVRLR 264
           ++  +V EA++L D GV E+ L+ Q    + G  L GE    + LL +L E+    +R+ 
Sbjct: 174 TIESIVREAQQLADQGVQELILISQITTNY-GLDLYGEP-KLAQLLQALGEVDIPWIRIH 231

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           Y  ++P  ++  +I+A  +   ++PYL LP+Q     ILK MNR         II+RI+ 
Sbjct: 232 Y--AYPTGLTPKVIEAIRETPNVLPYLDLPLQHSHPDILKRMNRPWQGRVNDSIIERIKD 289

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             P   + + FIVGFPGET++ +   ++ V +  +     F +SP   TP  +M  Q+ +
Sbjct: 290 AIPKAVLRTTFIVGFPGETEEHYAHLVEFVKRHEFDHVGVFTFSPEEETPAYHMANQIPQ 349

Query: 385 NVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQS 437
            +  +R   ++ +Q+ +  Q+   N AC+G I++VLIE+   + G+ +GRS    P +  
Sbjct: 350 EIMEQRRDTIMQIQQPISLQK---NCACIGDIVDVLIEQENPDTGQFIGRSARFAPEVDG 406

Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           +V      ++G II V+I D  I  LYGE++
Sbjct: 407 LVYVEGEASLGTIIPVKIKDADIYDLYGEVI 437


>gi|255655337|ref|ZP_05400746.1| radical SAM-superfamily protein [Clostridium difficile QCD-23m63]
 gi|296451323|ref|ZP_06893063.1| MiaB family RNA modification enzyme [Clostridium difficile NAP08]
 gi|296880325|ref|ZP_06904288.1| MiaB family RNA modification enzyme [Clostridium difficile NAP07]
 gi|296259929|gb|EFH06784.1| MiaB family RNA modification enzyme [Clostridium difficile NAP08]
 gi|296428566|gb|EFH14450.1| MiaB family RNA modification enzyme [Clostridium difficile NAP07]
          Length = 444

 Score =  210 bits (534), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 139/454 (30%), Positives = 239/454 (52%), Gaps = 27/454 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +  ++S GC  N+ D+  M  +  ++GY+ +   ++AD+I++NTC   E A ++    + 
Sbjct: 3   KIALESLGCSKNLVDAEIMMGILNNKGYKLIGDFEEADVIIVNTCGFIESAKQESIDTII 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
               LK    K G   L++V GC+AQ   EE+    P ++ +VG  +Y  + ++L     
Sbjct: 63  NFAELK----KTGNLKLLIVTGCLAQRYSEELKTEIPEIDAIVGTGSYQNIDKILRELSE 118

Query: 146 GKRVV---DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
             ++V   D ++   +   R       Y       A+L I EGC   CT+C++P  RG  
Sbjct: 119 MHQIVSLNDIEFVFNEDLPR-------YLSTPSYMAYLKIGEGCSNNCTYCIIPKLRGKY 171

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR    ++ EA+KL ++GV E+ ++ Q+   + G  L G K   S+LL  L++I G   
Sbjct: 172 RSRKFEDIIKEAKKLAESGVKELVVIAQDTTKY-GFDLYG-KERLSELLEELAKIDGFKW 229

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R   S+P  +++ LI+     D +  Y  +P+Q  S+ ILK MNR+ T  +    I+ I
Sbjct: 230 IRVMYSYPESITEELIQVIKKYDNICSYFDMPIQHASNNILKLMNRKTTKEDILNKINLI 289

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           RS  PD  + +  IVGFPGET+DDF+  +D V+++ + +  +F YS    TP   +   +
Sbjct: 290 RSNIPDAILRTTIIVGFPGETEDDFKQLVDFVEEVKFDRLGAFAYSREEDTPADRLPNHI 349

Query: 383 DENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK---GKLVGRSPWLQ 436
           DE+VK +R   L+ +Q+K+ E+    ND  +G+  EVLIE+  ++    G+  G +  + 
Sbjct: 350 DEDVKIQRRDTLMMIQQKISEE---LNDKKIGKTYEVLIEEQIEDNVYTGRTQGDAEEID 406

Query: 437 SVVL--NSKNHNIGDIIKVRITDVKISTLYGELV 468
           S+V   +  N  IG+ + V+I D     L G+++
Sbjct: 407 SIVYVKSVDNLEIGEFVSVKINDAMEYDLMGDVL 440


>gi|160880587|ref|YP_001559555.1| MiaB-like tRNA modifying enzyme YliG [Clostridium phytofermentans
           ISDg]
 gi|238065326|sp|A9KLS2|RIMO_CLOPH RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|160429253|gb|ABX42816.1| MiaB-like tRNA modifying enzyme YliG [Clostridium phytofermentans
           ISDg]
          Length = 440

 Score =  210 bits (534), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 146/453 (32%), Positives = 237/453 (52%), Gaps = 30/453 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + F  S GC  N+ DS  M  +   +G+E  N   +AD+IV+NTC     A E+  + + 
Sbjct: 2   KIFFISLGCDKNLVDSEVMLGLIRDRGFELTNDESEADIIVVNTCCFIHDAKEESINTIL 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +   K S   +G    ++V GC+AQ   E+IL   P V+ ++G  +Y  + E++++   
Sbjct: 62  EMAEYKKSGSLKG----LIVTGCLAQRYKEDILAEIPEVDALLGTTSYDAITEVIDKVLG 117

Query: 146 GKRV---VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           G+R     D DY  E K  R++   G Y       +FL I EGCDK CT+C++P  RG  
Sbjct: 118 GERTESFKDVDYLSEVKTNRVNTTGGYY-------SFLKIAEGCDKHCTYCIIPKIRGDY 170

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            S  + ++V+EA+ L + GV E+ L+ Q    + G  L G+K    +LL  L  I G+  
Sbjct: 171 RSVPMERLVEEAKFLSEGGVKELILIAQETTVY-GVDLYGKK-MLPELLRKLCAIDGIEW 228

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R    +P +++D LI        +  YL +P+Q  SD ILK M RR    E   +I ++
Sbjct: 229 IRIQYCYPEEINDELIDVLKSETKICHYLDIPIQHASDDILKRMGRRTNNEELVTLITKL 288

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R   PDIA+ +  I GFPGET++D     + V K+ + +   F YS    TP + M +Q+
Sbjct: 289 RKEIPDIALRTSLITGFPGETEEDHEILKEFVRKMRFERLGVFTYSKEEDTPAAKMKDQI 348

Query: 383 DENVKAERLLCLQKKLRE--QQVSFN--DACVGQIIEVLIEKHGKEKGKLVGRS----PW 434
            + VK  R    QK+L E  Q ++F   ++ VG+ ++V+IE    E G  +GR+    P 
Sbjct: 349 TKKVKVAR----QKELMEIQQGIAFERAESMVGRKLKVMIEGKLVEDGIFIGRTYMDAPN 404

Query: 435 LQS-VVLNSKNHNI-GDIIKVRITDVKISTLYG 465
           +   + +++K+  + G+ ++V +T+ K   L G
Sbjct: 405 IDGYIFVHTKDELMSGEFVEVTVTEAKEYDLIG 437


>gi|86606951|ref|YP_475714.1| MiaB tRNA modifying enzyme-like protein [Synechococcus sp.
           JA-3-3Ab]
 gi|86555493|gb|ABD00451.1| MiaB tRNA modifying enzyme-like protein [Synechococcus sp.
           JA-3-3Ab]
          Length = 439

 Score =  210 bits (534), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 134/446 (30%), Positives = 229/446 (51%), Gaps = 31/446 (6%)

Query: 33  GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92
           GC+ N  D+  M  +    GY      D AD +++NTC   E A  +  S L  +  ++ 
Sbjct: 4   GCEKNRVDTEHMLGLLAQAGYRVEGDEDSADYVIVNTCSFIEAARRESVSTLMEL-AVQG 62

Query: 93  SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV--- 149
            +I        ++AGC+AQ   EE+LR  P    +VG   Y+++ ++++RA  G+RV   
Sbjct: 63  KKI--------IIAGCLAQHFQEELLREIPEAVAIVGTGDYHQIVQVIQRAERGERVNAV 114

Query: 150 -VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
               DY  ++   R       Y       A+L + EGCD  C+FC++P+ RG + SR + 
Sbjct: 115 TSSLDYIADETVPR-------YRTTHAPVAYLRVAEGCDYRCSFCIIPHLRGKQRSRPIE 167

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
            ++ EA +L   GV E+ L+ Q    + G  L GE    ++L+ +L +I  +  +R   +
Sbjct: 168 SILREAEQLAAEGVQELILISQITTNY-GLDLYGEP-RLAELIRALGQIP-IPWIRMLYA 224

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
           +P  ++  +++A  +    + YL LP+Q     ILK+MNR        ++I+R+R   P 
Sbjct: 225 YPTGITPAVVEAIQETPNFLLYLDLPLQHSHPAILKAMNRPWQGQVNDRLIERLRQALPK 284

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
             + + FIVGFPGET++ F+  ++ V +  +     F +SP  GTP  ++ +QV E +K 
Sbjct: 285 AVLRTSFIVGFPGETEEHFQHLLEFVQRHQFDHVGVFTFSPEEGTPAYHLPQQVPEPLKE 344

Query: 389 ERLLCLQKKLREQQVSF--NDACVGQIIEVLIEKHGKEKGKLVGRSPWLQS----VVLNS 442
           ER   L +   +Q ++F  N   VGQ++ VL+E+     G+ +GRSP        VV   
Sbjct: 345 ERRARLMQL--QQGIAFRRNREQVGQVVPVLLEQENPRTGEWIGRSPRFAPEVDGVVYVR 402

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
              ++G ++ V+IT  +   L+G++V
Sbjct: 403 GPGSLGSLVPVQITRAEPYDLFGQVV 428


>gi|238066630|sp|Q2JSD0|RIMO_SYNJA RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
          Length = 460

 Score =  210 bits (534), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 134/446 (30%), Positives = 229/446 (51%), Gaps = 31/446 (6%)

Query: 33  GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92
           GC+ N  D+  M  +    GY      D AD +++NTC   E A  +  S L  +  ++ 
Sbjct: 25  GCEKNRVDTEHMLGLLAQAGYRVEGDEDSADYVIVNTCSFIEAARRESVSTLMEL-AVQG 83

Query: 93  SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV--- 149
            +I        ++AGC+AQ   EE+LR  P    +VG   Y+++ ++++RA  G+RV   
Sbjct: 84  KKI--------IIAGCLAQHFQEELLREIPEAVAIVGTGDYHQIVQVIQRAERGERVNAV 135

Query: 150 -VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
               DY  ++   R       Y       A+L + EGCD  C+FC++P+ RG + SR + 
Sbjct: 136 TSSLDYIADETVPR-------YRTTHAPVAYLRVAEGCDYRCSFCIIPHLRGKQRSRPIE 188

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
            ++ EA +L   GV E+ L+ Q    + G  L GE    ++L+ +L +I  +  +R   +
Sbjct: 189 SILREAEQLAAEGVQELILISQITTNY-GLDLYGEP-RLAELIRALGQIP-IPWIRMLYA 245

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
           +P  ++  +++A  +    + YL LP+Q     ILK+MNR        ++I+R+R   P 
Sbjct: 246 YPTGITPAVVEAIQETPNFLLYLDLPLQHSHPAILKAMNRPWQGQVNDRLIERLRQALPK 305

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
             + + FIVGFPGET++ F+  ++ V +  +     F +SP  GTP  ++ +QV E +K 
Sbjct: 306 AVLRTSFIVGFPGETEEHFQHLLEFVQRHQFDHVGVFTFSPEEGTPAYHLPQQVPEPLKE 365

Query: 389 ERLLCLQKKLREQQVSF--NDACVGQIIEVLIEKHGKEKGKLVGRSPWLQS----VVLNS 442
           ER   L +   +Q ++F  N   VGQ++ VL+E+     G+ +GRSP        VV   
Sbjct: 366 ERRARLMQL--QQGIAFRRNREQVGQVVPVLLEQENPRTGEWIGRSPRFAPEVDGVVYVR 423

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
              ++G ++ V+IT  +   L+G++V
Sbjct: 424 GPGSLGSLVPVQITRAEPYDLFGQVV 449


>gi|78222094|ref|YP_383841.1| MiaB-like tRNA modifying enzyme [Geobacter metallireducens GS-15]
 gi|78193349|gb|ABB31116.1| MiaB-like tRNA modifying enzyme [Geobacter metallireducens GS-15]
          Length = 431

 Score =  209 bits (533), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 140/410 (34%), Positives = 218/410 (53%), Gaps = 19/410 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA-AEKVYSF 83
           QR  + + GC++N ++S  M +    +G+  V   +DAD+ V+NTC +  K  AE     
Sbjct: 2   QRVAISTLGCKINQFESAAMTESLGREGFRVVPFDEDADIYVINTCTVTAKTDAESRRLI 61

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
              +R    +R        VVV GC AQ    + ++  P V +VVG      + ELL  A
Sbjct: 62  RRALRRNPAAR--------VVVTGCYAQV-APDAVKDLPGVALVVGNSEKRSIGELLRDA 112

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
              ++V+ +D S E   E L +     + +    AFL +Q GCD FC++C+VPY RG   
Sbjct: 113 APAEKVMVSDISRERTAEGLRLESFAEHTR----AFLQVQNGCDAFCSYCIVPYARGRSR 168

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI-KGLVR 262
           S S S+ +   R     G  E+ L G ++ A+   GLD    T    L   SE  K + R
Sbjct: 169 SVSFSEALAGIRNFAAQGFREVVLTGIHLGAY---GLDLAPPTNLLALLEASEAEKAVPR 225

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LR  +  P +++D L+      + + P+LH+P+QSG DR+L+ M RR+TA  +R+ ++R+
Sbjct: 226 LRVGSVEPNELTDALVDFLARSETVCPHLHIPLQSGDDRVLERMGRRYTAAFFRERVERL 285

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
            +V PDI I  D I GFPGETD++F+ T+ L++++  A    F YS R GT  + M  QV
Sbjct: 286 VAVVPDIFIGCDVIAGFPGETDEEFQNTVRLIEELPVASLHVFPYSRREGTAAARMEGQV 345

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS 432
           D  V   R   L++    ++ SF +  VG+ + VL++  G++ G+ VG S
Sbjct: 346 DGKVIRGRAEILREVGERKRRSFCERFVGRELAVLMQNRGRD-GEAVGLS 394


>gi|331090885|ref|ZP_08339729.1| ribosomal protein S12 methylthiotransferase rimO [Lachnospiraceae
           bacterium 2_1_46FAA]
 gi|330405531|gb|EGG85062.1| ribosomal protein S12 methylthiotransferase rimO [Lachnospiraceae
           bacterium 2_1_46FAA]
          Length = 440

 Score =  209 bits (533), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 149/449 (33%), Positives = 237/449 (52%), Gaps = 26/449 (5%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ D+  M  +  S+G++ VN   +AD+IV+NTC     A E+    +  +  L
Sbjct: 7   SLGCDKNLVDTEVMLGLLASKGHQMVNDEMEADVIVINTCCFIHDAKEESIQNILEMAEL 66

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
           K    KEG    ++V GC+AQ   EEI+   P V+ V+G  +Y ++ E ++ A  G+  V
Sbjct: 67  K----KEGRLKALIVTGCLAQRYKEEIIEEIPEVDAVLGTTSYDKILEAIDEALEGRHCV 122

Query: 151 D-TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209
           + TD       +   +V  G     G  A+L I EGCDK CT+C++P  RG   S  + +
Sbjct: 123 EMTDIDALPLVQSNRLVTTG-----GHFAYLKIAEGCDKHCTYCIIPKIRGNFRSVPMER 177

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSH 269
           ++ EA  L + GV E+ L+ Q    + GK + GEK +   LL  L ++ G+  +R    +
Sbjct: 178 LLKEAEGLAEQGVKELILVAQETTLY-GKDIYGEK-SLHKLLKELCKVSGIQWIRILYCY 235

Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329
           P +++D LI+   +   +  YL LP+Q  SD ILK M RR +  + ++II ++R   PDI
Sbjct: 236 PEEITDELIQVMKEEKKICHYLDLPIQHASDEILKRMGRRTSKAQLKEIIGKLREEIPDI 295

Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAE 389
            + +  I GFPGET +     M+ VD++ + +   F YSP   TP + M  Q++E VK +
Sbjct: 296 TLRTTLITGFPGETKEQHEELMEFVDEMEFDRLGVFTYSPEEDTPAALMDNQIEEEVKED 355

Query: 390 RLLCLQKKLRE--QQVSFNDA--CVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVLN 441
           R    Q +L E  Q ++F+ A   +G+ + VLIE    ++   VGR+    P +  ++  
Sbjct: 356 R----QAELMELQQDIAFDLAEDMIGKEVLVLIEGKVADENAYVGRTYKDAPNVDGLIFV 411

Query: 442 SKNHNI--GDIIKVRITDVKISTLYGELV 468
           +    +  GD  KVR+T      L GE+V
Sbjct: 412 NTEEELMSGDFAKVRVTGALEYDLIGEIV 440


>gi|255659203|ref|ZP_05404612.1| tRNA-I(6)A37 modification enzyme MiaB [Mitsuokella multacida DSM
           20544]
 gi|260848655|gb|EEX68662.1| tRNA-I(6)A37 modification enzyme MiaB [Mitsuokella multacida DSM
           20544]
          Length = 430

 Score =  209 bits (533), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 132/393 (33%), Positives = 208/393 (52%), Gaps = 16/393 (4%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           + + GC++N +++  ME +F  +GYE V     AD+ V+NTC +      K    + R  
Sbjct: 5   LTTLGCKVNQFETETMEGLFKQRGYEVVPFEARADVYVINTCSVTSLGDRKSRQIIRRAH 64

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA--RFG 146
                  +E    +V V GC AQ   +EI +    V VV+G +    + + +E+A    G
Sbjct: 65  -------RENPQAIVAVCGCYAQVAPDEI-KAIEGVRVVLGTKERAHIVDYVEKAMQEDG 116

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
            +   TD      FE + +    Y+      AFL I++GC  FC++C++PY RG   SR 
Sbjct: 117 IQGTITDIMKAKTFEDIPL----YDSPERTRAFLKIEDGCQNFCSYCIIPYARGPVKSRL 172

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
              V  EA KL+  G  EI L G ++ A+ G+ L G+  T +D    +  + GL RLR  
Sbjct: 173 PEHVHREAEKLVAMGFKEIVLTGIHLGAY-GRDLPGD-ITLADACREVLSVPGLKRLRLG 230

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
           +    ++S  L     + +    +LHLP+Q+GSD++LK MNR +   E+ ++I+ I    
Sbjct: 231 SLESIELSPELFALIREDERFCAHLHLPLQAGSDKVLKDMNRHYDTQEFARLIEHIEEEV 290

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           P +AIS+D IVGFPGET++DF   +  V+K+ +A+   F YS R GTP +   +QVDE V
Sbjct: 291 PGVAISTDIIVGFPGETEEDFEQGLSFVEKMNFARMHVFPYSRRTGTPAAARKDQVDEAV 350

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419
           K ER+  +Q     +   F+ + +G+ + VL E
Sbjct: 351 KKERVHRMQALADRKAEEFHRSFIGREMRVLFE 383


>gi|210610065|ref|ZP_03288244.1| hypothetical protein CLONEX_00430 [Clostridium nexile DSM 1787]
 gi|210152676|gb|EEA83682.1| hypothetical protein CLONEX_00430 [Clostridium nexile DSM 1787]
          Length = 430

 Score =  209 bits (533), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 127/440 (28%), Positives = 237/440 (53%), Gaps = 24/440 (5%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +R  + + GC++N Y++  M+ +    GYE V   + AD+ ++NTC +   A  K    L
Sbjct: 2   KRAALHNLGCKVNAYETEAMQQLLEENGYEIVPFKEGADVYIINTCTVTNMADRKSRQML 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE--- 141
            R + +         D +VV AGC  QA+ E        +++V+G      L ++L+   
Sbjct: 62  HRAKKM-------NPDAIVVAAGCYVQAK-EASGEIDESIDIVIGNNKKKDLIQILDGFY 113

Query: 142 --RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
             +    K V+D +++ E  +E + +     + +    A++ +Q+GC++FCT+C++P+ R
Sbjct: 114 EKKQGQNKAVIDINHTHE--YEEMHLNKTAEHTR----AYIKVQDGCNQFCTYCIIPFAR 167

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G   SR+   VV E  +L  NG  E+ L G +++++   G+D E      L+ +++EI+G
Sbjct: 168 GRVRSRAKEDVVREVTELAANGYQEVVLTGIHLSSY---GVDLENENLLSLILAVNEIEG 224

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           + R+R  +  PR +++  +K    L+ + P+ HL +QSG D  L+ MNRR+T+ EY +  
Sbjct: 225 IKRIRLGSLEPRIITEDFVKTISGLEKMCPHFHLSLQSGCDETLRRMNRRYTSEEYYEKC 284

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
             +R      A+++D IVGFPGET+++F  +   +DK+ + +   FKYS R GT  + M 
Sbjct: 285 MLLRKYFAHPALTTDVIVGFPGETEEEFEKSKAFIDKVDFYETHIFKYSKREGTKAAVMD 344

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK--LVGRSPWLQS 437
            Q+ E +K  R   L +  +++++ + +  VG  +EVL+E+  K  G+   VG +     
Sbjct: 345 NQIPEQIKTARSNELLELGQKKRIKYEEQFVGTTVEVLMEEQIKIDGENYQVGHTKEYVK 404

Query: 438 VVLNSKNHNIGDIIKVRITD 457
           V L ++ +    ++ ++I +
Sbjct: 405 VALKTEANLQNKLVDIQIDN 424


>gi|226324639|ref|ZP_03800157.1| hypothetical protein COPCOM_02424 [Coprococcus comes ATCC 27758]
 gi|225207087|gb|EEG89441.1| hypothetical protein COPCOM_02424 [Coprococcus comes ATCC 27758]
          Length = 441

 Score =  209 bits (532), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 128/408 (31%), Positives = 219/408 (53%), Gaps = 31/408 (7%)

Query: 33  GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92
           GC++N Y++  M+++    GYE V   D AD+ V+NTC +   A  K    + R R    
Sbjct: 10  GCKVNAYETEAMQELLEKNGYEIVPFHDLADVYVINTCSVTNMADRKSRQMIHRAR---- 65

Query: 93  SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER------ARFG 146
              K+  D ++V AGC  QA+ + +      +++V+G      L  LLE           
Sbjct: 66  ---KQNPDAVIVAAGCYVQAQAD-MGELDENIDIVIGNNKKKDLIRLLEEYFKEDIPEQM 121

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           + V+D +++ E  +E L +     + +    A+L +Q+GC++FCT+C++PY RG   SR 
Sbjct: 122 QEVIDINHTFE--YESLHLSRTAEHTR----AYLKVQDGCNQFCTYCIIPYARGRVRSRK 175

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNA----WR---GKGLDGEKCTFSDLLYSLSEIKG 259
              VV+E R L ++G  E+ L G ++++    W+   GK  +G      DL+ ++  ++G
Sbjct: 176 KEDVVEEVRTLAEHGYQEVVLTGIHLSSYGLEWKDENGKQTEG----LLDLIRAVHGVEG 231

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           + R+R  +  PR +++   K    L  + P+ HL +QSG D  LK MNRR+ A EYR+  
Sbjct: 232 IKRIRLGSLEPRIVTEEFAKELACLPKICPHFHLSLQSGCDATLKRMNRRYDAAEYREKC 291

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
           + +R    + A+++D IVGFP E++++F A+ D VD I + +   FKYS R GT  + M 
Sbjct: 292 ELLRKYFENPALTTDVIVGFPQESEEEFEASRDFVDSINFYETHIFKYSKRQGTKAAKMD 351

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK 427
            Q+ E+ K  R   + +  R++   + +  +G+ +EVL E+  +  GK
Sbjct: 352 GQIPEHEKTRRSNIMLELNRKKMQRYEEGWLGKKVEVLFEEMTERDGK 399


>gi|254413514|ref|ZP_05027284.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Microcoleus
           chthonoplastes PCC 7420]
 gi|196179621|gb|EDX74615.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Microcoleus
           chthonoplastes PCC 7420]
          Length = 445

 Score =  209 bits (532), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 141/449 (31%), Positives = 224/449 (49%), Gaps = 29/449 (6%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA-AEKVYSFLGRI 87
           +   GC+ N  D+  +  +    GY   ++ D A+ +++NTC   E A  E V + +   
Sbjct: 9   ISHLGCEKNRIDTEHILGLLVQAGYPVDSNEDLAEYVIVNTCSFIEAARTESVRTLV--- 65

Query: 88  RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147
             L  +  K      +V+AGC+AQ   E++L   P    VVG   Y  + E++ER   G+
Sbjct: 66  -ELAEANKK------IVIAGCMAQHFQEKLLAELPEAVAVVGTGDYQNIVEVIERVEAGE 118

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVT---AFLTIQEGCDKFCTFCVVPYTRGIEIS 204
           RV     S E  +    I D    R R  +   A+L + EGC+  C FC++PY RG + S
Sbjct: 119 RV--KAVSAEPTY----IADETTPRYRTTSEGVAYLRVAEGCNYRCAFCIIPYLRGNQRS 172

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK-GLVRL 263
           R++  +V EA +L   GV E+ L+ Q    + G  L GE    ++LL +L ++    +R+
Sbjct: 173 RTIESIVAEAEQLASQGVQELILISQITTNY-GVDLYGEP-KLAELLRALGKVDIPWIRM 230

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
            Y  ++P  +++ ++ A  +   ++PYL LP+Q     +L++MNR        QIID I+
Sbjct: 231 HY--AYPTGLTEPVMAAIQETPNVLPYLDLPLQHSHPEVLRAMNRPWQGRVNDQIIDHIK 288

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           +  P+  + + FIVGFPGET+  F   +  V    +     F +SP  GTP  N+   V 
Sbjct: 289 TALPNAVLRTTFIVGFPGETEQHFNHLLQFVQHHEFDHVGVFTFSPEEGTPAYNLPNSVP 348

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVV 439
           + V  ER   L    +   +  N   VG+I++VLIE+     GK +GRS    P +  +V
Sbjct: 349 QAVMEERRQTLMAVQQPITLKKNQGEVGKIVDVLIEQENPSTGKQIGRSARFAPEVDGLV 408

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  +G I++V ITD  I  LYG +V
Sbjct: 409 YVQGEAPLGTIVEVEITDAGIYDLYGSVV 437


>gi|297544398|ref|YP_003676700.1| MiaB-like tRNA modifying protein [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
 gi|296842173|gb|ADH60689.1| MiaB-like tRNA modifying enzyme [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
          Length = 449

 Score =  209 bits (532), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 129/439 (29%), Positives = 238/439 (54%), Gaps = 19/439 (4%)

Query: 33  GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92
           GC++N Y++  M ++F   GYE V+  + AD+ V+NTC +  ++  K    + + R    
Sbjct: 23  GCKVNQYETEVMAELFKKAGYEVVDFDEKADVYVINTCTVTNRSDMKSRQEIRKAR---- 78

Query: 93  SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER--ARFGKRVV 150
              K+  + +VV  GC  Q   +++    P V++ +G +   ++ EL+E    +  K  V
Sbjct: 79  ---KKNPNAVVVAVGCYVQVSPKDVFS-LPEVDIAIGTKNKDKIVELVEEFTQKHQKLSV 134

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
             +   + ++E   +    Y  +    A++ IQ+GC+++CT+C++PY RG   SR   ++
Sbjct: 135 VNNIMTQKEYEEFEVT--AYTER--TRAYVKIQDGCNQYCTYCIIPYARGPVRSREPEKI 190

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270
           ++E ++  D+G  EI L G ++ ++   G D +     D++  + EI G+ R+R ++  P
Sbjct: 191 LEEVKRFADSGYKEIVLTGIHIASY---GKDLKNIGLLDIIKRIHEIDGIKRIRLSSIEP 247

Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330
             +++  +K    L  +  + H+ +QSG D  LK M RR+T  EY+ +IDR+R    D+A
Sbjct: 248 VFLTEEFVKEIAKLPKMCRHYHVSLQSGCDETLKRMGRRYTTKEYKSVIDRLRKYIKDVA 307

Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER 390
           I++D +VGFPGET+++F  T   V++I +++   FKYS R GT   +   QV  ++K +R
Sbjct: 308 ITTDVMVGFPGETEEEFLETYKFVEEICFSKMHVFKYSRRKGTRAYSFPNQVANHIKEDR 367

Query: 391 LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRSPWLQSVVLNSKNHNI-G 448
              L +  +  +  F ++ +G+ +EVL E+  K  KG + G +    SV +      +  
Sbjct: 368 SKKLIELSKRCEYKFMESFIGKTLEVLFEQPVKNMKGYVEGLTDNYLSVAVKGDIKLLRN 427

Query: 449 DIIKVRITDVKISTLYGEL 467
           +I  V+I + K + L GE+
Sbjct: 428 EIYPVKIKERKDNFLIGEI 446


>gi|290968565|ref|ZP_06560103.1| MiaB-like protein [Megasphaera genomosp. type_1 str. 28L]
 gi|290781218|gb|EFD93808.1| MiaB-like protein [Megasphaera genomosp. type_1 str. 28L]
          Length = 440

 Score =  209 bits (532), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 128/397 (32%), Positives = 216/397 (54%), Gaps = 21/397 (5%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N YD+  M  +F + G+      + AD+ V+NTC + +   +K    + R +  
Sbjct: 8   TLGCRVNQYDTDSMRGLFAAAGFRTALFTETADVYVINTCSVTQMGEKKSRQLIRRAK-- 65

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE---RARFGK 147
                K+    +VVV GC AQ    ++L     V+ VVG     ++  +++   +A  G 
Sbjct: 66  -----KQNPHSVVVVTGCYAQL-SPDVLAAMEGVDAVVGTNEKKKIVTIVQTLLQAPSGH 119

Query: 148 RVV---DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            +    D  +S  D+FE + +        R   A L IQEGC+ FCT+C++PYTRG   S
Sbjct: 120 ALTAIHDIRHS-PDEFEEIPLYPAAVTHTR---ADLKIQEGCNNFCTYCIIPYTRGKLKS 175

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R    +V+EA++L++ G  E+ L G ++ A+ GK L  EK T + +L  L E   ++RLR
Sbjct: 176 RRPDAIVEEAKRLVEAGFKELVLTGIHLGAY-GKEL-AEKPTLAHILRRLVEETDVLRLR 233

Query: 265 YTTSHPRDMSDCLIKAHGDLDV-LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
             +    ++ D LI+   + +  + P+LH+P+Q+GSD ILK+MNR++T  EY  ++  ++
Sbjct: 234 LGSIDSLEVDDDLIRIINEAEQRICPHLHIPIQAGSDTILKAMNRQYTKQEYIGLLTHLQ 293

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              P+I  S+D I+GFPGET+  F  TM+ + ++ Y+   +F +SPR GTP + M  QV 
Sbjct: 294 QHIPNITFSTDLILGFPGETEALFEETMETLRQLPYSHIHAFPFSPRQGTPAATMAGQVS 353

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
              +  R+  +      Q+     + +G+ + VLIE+
Sbjct: 354 PVERKRRVEAVNALSAAQKQQVQQSFLGKTVHVLIEQ 390


>gi|168335412|ref|ZP_02693503.1| MiaB-like tRNA modifying enzyme YliG [Epulopiscium sp. 'N.t.
           morphotype B']
          Length = 446

 Score =  209 bits (532), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 145/454 (31%), Positives = 231/454 (50%), Gaps = 37/454 (8%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ DS  M  +    G+  ++  D AD+I++NTC   + A ++    +  +   
Sbjct: 9   SLGCDKNLVDSEHMLGLLNEGGFVLISEEDKADVIIVNTCCFIDDAKQESIDSILEVAQY 68

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
           K    K G    ++V GC+A+    E+L   P V+ VVG  +Y ++          + V+
Sbjct: 69  K----KTGNCKALIVTGCMAERYKTELLEEMPEVDAVVGTTSYDKI------VHIARNVL 118

Query: 151 DTDYSVEDKFERLS----------IVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           D +  V+  FE ++          +  GGY       A++ I EGC+  CT+C++P  RG
Sbjct: 119 DQN-EVKQHFEDVNRPHLENMPRVLTTGGY------FAYIKIAEGCNSHCTYCIIPSLRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
              SR   ++V+E  +L ++GV EI L+ QN   +   G+D +  T ++LL  LS+I G+
Sbjct: 172 QYRSRPKEKIVEEVMQLAEDGVSEIILVAQNTTMY---GID-KGYTLTNLLQELSDIDGI 227

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
             +R    +P +++D LI+       +  YL +P+Q  SD+ILK MNR+ +    +Q+I 
Sbjct: 228 EWIRILYCYPENITDELIEEIKVNSKVCKYLDIPIQHSSDQILKRMNRKSSNAFLKQLIQ 287

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R   P+I I S  IVGFPGET++DF   +D V +    +   F YS   GTP + +  
Sbjct: 288 KLRDNIPNIMIRSTLIVGFPGETEEDFNNLIDFVKETKLDRLGVFTYSQEEGTPAAKLAN 347

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEK---GKLVGRSPWLQ 436
           Q+DE++K  R   + K  +E         VG+I  VLIE K  KE    G+  G +P + 
Sbjct: 348 QIDEHIKESRKNTIMKIQQEISKQICATKVGKIFRVLIEGKLEKEDVYIGRTYGDAPVVD 407

Query: 437 SVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468
           S V      ++  GD I V+IT      L GE+V
Sbjct: 408 SKVFVEYEGDLMCGDFISVKITQADEYDLIGEVV 441


>gi|254974871|ref|ZP_05271343.1| radical SAM-superfamily protein [Clostridium difficile QCD-66c26]
 gi|255092258|ref|ZP_05321736.1| radical SAM-superfamily protein [Clostridium difficile CIP 107932]
 gi|255313998|ref|ZP_05355581.1| radical SAM-superfamily protein [Clostridium difficile QCD-76w55]
 gi|255516678|ref|ZP_05384354.1| radical SAM-superfamily protein [Clostridium difficile QCD-97b34]
 gi|255649777|ref|ZP_05396679.1| radical SAM-superfamily protein [Clostridium difficile QCD-37x79]
 gi|260682934|ref|YP_003214219.1| radical SAM-superfamily protein [Clostridium difficile CD196]
 gi|260686532|ref|YP_003217665.1| radical SAM-superfamily protein [Clostridium difficile R20291]
 gi|260209097|emb|CBA62258.1| radical SAM-superfamily protein [Clostridium difficile CD196]
 gi|260212548|emb|CBE03514.1| radical SAM-superfamily protein [Clostridium difficile R20291]
          Length = 444

 Score =  209 bits (531), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 140/455 (30%), Positives = 244/455 (53%), Gaps = 29/455 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +  ++S GC  N+ D+  M  +  ++GY+ +   ++AD+I++NTC   E A ++    + 
Sbjct: 3   KIALESLGCSKNLVDAEIMMGILNNKGYKLIGDFEEADVIIVNTCGFIESAKQES---ID 59

Query: 86  RIRNLKNSRIKEGGDL-LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            I N   S +K+ G+L L++V GC+AQ   EE+    P ++ +VG  +Y  + ++L+   
Sbjct: 60  TIINF--SELKKTGNLKLLIVTGCLAQRYSEELKTEIPEIDAIVGTGSYQNIDKILKELS 117

Query: 145 FGKRVV---DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
              ++V   D ++   +   R       Y       A+L I EGC   CT+C++P  RG 
Sbjct: 118 EMHQIVSLNDIEFVFNEDLPR-------YISTPSYMAYLKIGEGCSNNCTYCIIPKLRGK 170

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
             SR    ++ EA+KL ++GV E+ ++ Q+   + G  L G K   S+LL  L++I G  
Sbjct: 171 YRSRKFEDIIKEAKKLAESGVKELVVIAQDTTKY-GFDLYG-KERLSELLEELAKIDGFK 228

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
            +R   S+P  +++ LI+     D +  Y  +P+Q  S+ ILK MNR+ T  +    I+ 
Sbjct: 229 WIRVMYSYPESITEELIQVIKKYDNICSYFDMPIQHASNNILKLMNRKTTKEDILNKINL 288

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           IRS  PD  + +  IVGFPGET+DDF+  +D V+++ + +  +F YS    TP   +   
Sbjct: 289 IRSNIPDAILRTTIIVGFPGETEDDFKQLVDFVEEVKFDRLGAFAYSREEDTPADRLPNH 348

Query: 382 VDENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK---GKLVGRSPWL 435
           +DE VK +R   L+ +Q+K+ E+    ND  +G+  EVLIE+  ++    G+  G +  +
Sbjct: 349 IDEEVKIQRRDTLMMIQQKISEE---LNDKKIGKTYEVLIEEQIEDNVYTGRTQGDAEEI 405

Query: 436 QSVVL--NSKNHNIGDIIKVRITDVKISTLYGELV 468
            S+V   +  N  +G+ + V+I D     L G+++
Sbjct: 406 DSIVYVKSVDNLEVGEFVSVQINDAMEYDLMGDVL 440


>gi|295109586|emb|CBL23539.1| MiaB-like tRNA modifying enzyme [Ruminococcus obeum A2-162]
          Length = 438

 Score =  209 bits (531), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 130/439 (29%), Positives = 245/439 (55%), Gaps = 17/439 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + ++  + + GC++N Y+   M+ +    GYE V   + AD+ ++NTC +   A  K   
Sbjct: 1   MKKKVALHNLGCKVNAYEVEAMQQLLEKAGYEIVPFTEGADVYLINTCTVTNIADRKSRQ 60

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            L + + +         D +VV AGC AQA+ E+ L+    V++++G     ++ E+LE 
Sbjct: 61  MLHKAKKM-------NPDAIVVAAGCYAQADTEK-LKEDNAVDLILGNNQKTQIVEVLEE 112

Query: 143 --ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
                 K+V   + +   ++E LSI     +    V A++ +Q+GC++FCT+C++P+ RG
Sbjct: 113 YEKEHSKQVQVIEINHTKEYEELSIEQTAEH----VRAYIKVQDGCNQFCTYCIIPFARG 168

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
              SR ++ V+ E   L   G  E+ L G +++++       E+ +   L+ ++S++ G+
Sbjct: 169 RVRSRKIADVLREVETLASKGYKEVVLTGIHLSSYGVDFPKEERESLLSLIQAVSKVAGI 228

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R  +  PR +++  ++       + P+ HL +QSG ++ LK+MNRR++A EY +  +
Sbjct: 229 QRIRLGSLEPRIITEEFLEGIVATGKVCPHFHLSLQSGCNKTLKNMNRRYSAQEYAEKCE 288

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
            IR   P  A+++D IVGFP ET++DF  + + V  I + +   FKYS R GT  + M  
Sbjct: 289 LIRKYYPAPALTTDVIVGFPMETEEDFEESYEFVKNIHFYETHIFKYSRRHGTKAAAMDG 348

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL--VGRS-PWLQS 437
           Q+ E VKA+R   L +    +   + +A +G+ IE+L+E+  +E GK+  VG S  ++++
Sbjct: 349 QLTEAVKAQRSEKLLELHDIRAKEYEEAMIGKTIELLLEEEIEEDGKMWYVGHSREYVRA 408

Query: 438 VVLNSKNHNIGDIIKVRIT 456
           V+  ++ H + D+++ ++T
Sbjct: 409 VIEKTEVHQVNDLVEAKVT 427


>gi|255100347|ref|ZP_05329324.1| radical SAM-superfamily protein [Clostridium difficile QCD-63q42]
 gi|255306284|ref|ZP_05350455.1| radical SAM-superfamily protein [Clostridium difficile ATCC 43255]
          Length = 444

 Score =  209 bits (531), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 138/454 (30%), Positives = 239/454 (52%), Gaps = 27/454 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +  ++S GC  N+ D+  M  +  ++GY+ +   ++AD+I++NTC   E A ++    + 
Sbjct: 3   KIALESLGCSKNLVDAEIMMGILNNKGYKLIGDFEEADVIIVNTCGFIESAKQESIDTII 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
               LK    K G   L++V GC+AQ   EE+    P ++ +VG  +Y  + ++L+    
Sbjct: 63  NFAELK----KTGNLKLLIVTGCLAQRYSEELKTEIPEIDAIVGTGSYQNIDKILKELSE 118

Query: 146 GKRVV---DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
             ++V   D ++   +   R       Y       A+L I EGC   CT+C++P  RG  
Sbjct: 119 MHQIVSLNDIEFVFNEDLPR-------YISTPSYMAYLKIGEGCSNNCTYCIIPKLRGKY 171

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR    ++ EA+KL ++GV E+ ++ Q+   + G  L G K   S+LL  L++I G   
Sbjct: 172 RSRKFEDIIKEAKKLAESGVKELVVIAQDTTKY-GFDLYG-KERLSELLEELAKIDGFKW 229

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R   S+P  +++ LI+     D +  Y  +P+Q  S+ ILK MNR+ T  +    I+ I
Sbjct: 230 IRVMYSYPESITEELIQVIKKYDNICSYFDMPIQHASNNILKLMNRKTTKEDILNKINLI 289

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           RS  PD  + +  IVGFPGET+DDF+  +D V+++ + +  +F YS    TP   +   +
Sbjct: 290 RSNIPDAILRTTIIVGFPGETEDDFKQLVDFVEEVKFDRLGAFAYSREEDTPADRLPNHI 349

Query: 383 DENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK---GKLVGRSPWLQ 436
           DE VK +R   L+ +Q+K+ E+    ND  +G+  EVLIE+  ++    G+  G +  + 
Sbjct: 350 DEEVKIQRRDTLMMIQQKISEE---LNDKKIGKTYEVLIEEQIEDNVYTGRTQGDAEEID 406

Query: 437 SVVL--NSKNHNIGDIIKVRITDVKISTLYGELV 468
           S+V   +  N  +G+ + V+I D     L G+++
Sbjct: 407 SIVYVKSVDNLEVGEFVSVQINDAMEYDLMGDVL 440


>gi|284929205|ref|YP_003421727.1| 30S ribosomal protein S12P methylthiotransferase [cyanobacterium
           UCYN-A]
 gi|284809649|gb|ADB95346.1| SSU ribosomal protein S12P methylthiotransferase [cyanobacterium
           UCYN-A]
          Length = 439

 Score =  208 bits (530), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 141/452 (31%), Positives = 236/452 (52%), Gaps = 35/452 (7%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCH-IREKAAEKVYSFLGRI 87
           +   GC+ N  DS  +  +  ++GY   ++ + AD +V+NTC  I++   E V + +   
Sbjct: 9   ISHLGCEKNRIDSEHILGLLAAEGYSVSSNENLADYVVVNTCSFIQQAREESVRTLVELA 68

Query: 88  RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147
            N K           +++AGC+AQ   +++L   P V  +VG   Y  + + ++R   G+
Sbjct: 69  ENNKK----------IIIAGCMAQHFQDQLLEELPEVVAIVGTGNYQEIVKTVQRVELGE 118

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVT---AFLTIQEGCDKFCTFCVVPYTRGIEIS 204
           RV+D   S +  F    I D    R R      A+L I EGC+  CTFC++P+ RG + S
Sbjct: 119 RVIDI--SQKPTF----IADETVPRYRTTNEGVAYLRIAEGCNYRCTFCIIPHLRGNQRS 172

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK-GLVRL 263
           R++  +V EA++L + GV EI ++ Q    + G  L G K   ++LL +L ++    +R+
Sbjct: 173 RTIESIVAEAQQLANEGVQEIIIVSQITTNY-GLDLYG-KVKLAELLQALGKVNVPWIRV 230

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
            Y  ++P  ++  ++KA  ++  ++PYL LP+Q    +ILK+MNR        +II  IR
Sbjct: 231 HY--AYPTGLTAEVLKAVKEVPNVIPYLDLPLQHSHPKILKAMNRPWKEAINDEIIKSIR 288

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           +  PD+ + + FIVGFPGETD+ F   +  + +  +     F +SP  GTP   M +QV 
Sbjct: 289 ASIPDVVLRTTFIVGFPGETDEYFEHLVKFIKRHHFDHVGVFVFSPEEGTPSYKMPDQVP 348

Query: 384 ENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQ 436
             +  ER   L+ +Q+ +  ++   N   VG+I++VLIE+   +  + +GR    SP + 
Sbjct: 349 LEIAQERRDYLMEIQQPISNRK---NQQYVGKIVKVLIEQENTKTHQYIGRSIKSSPDVD 405

Query: 437 SVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            VV       +  II V IT      LYG++V
Sbjct: 406 GVVFVKGKAQLNSIIPVEITKADAYDLYGKVV 437


>gi|282883211|ref|ZP_06291810.1| protein YqeV [Peptoniphilus lacrimalis 315-B]
 gi|281297023|gb|EFA89520.1| protein YqeV [Peptoniphilus lacrimalis 315-B]
          Length = 431

 Score =  208 bits (530), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 137/456 (30%), Positives = 247/456 (54%), Gaps = 35/456 (7%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERV-NSMDDADLIVLNTCHIREKAAEKVY 81
           + + F + + GC++N Y+S  M ++F   GY +V N  D AD+ ++NTC +   +  K  
Sbjct: 1   MAKTFSILTLGCKVNQYESEAMAELFEKNGYIQVDNDTDVADVYIVNTCTVTNLSDRKSR 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
            ++ R +       +E  D  V V GC AQ   +E+  +   V+VV+G     ++ +L+E
Sbjct: 61  QYIRRAK-------RENPDSTVAVVGCYAQVAPKEV-EKIEGVDVVIGTSERSKIVDLIE 112

Query: 142 RARFGKRVVDT--DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
            A+   + ++   D   +  F+ + I D  +++ R   +++ +Q+GC+++CT+C++PY R
Sbjct: 113 EAKEEDKKINIVRDIKKDRDFQFIKI-DENFHKTR---SYMKVQDGCNRYCTYCIIPYAR 168

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G   SR +   V EA +L + G  EI L G +V ++   G+D       DL+ +++E+ G
Sbjct: 169 GTIRSRRIGDCVREAIRLANAGYKEIILTGIHVGSY---GVDLGPVRLIDLIEAIAEVDG 225

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           + R+R ++  P  +S+  ++       L  + HL +QSGS+++LK MNR +   E+ +  
Sbjct: 226 IERIRLSSVEPNIISEDFMRRAIACSKLCDHFHLSLQSGSNKVLKDMNRHYNREEFIEKT 285

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
             I+   P   +++D IVGFPGE+D+DF  +M +V ++ +++   FKYS R  TP ++  
Sbjct: 286 KIIKKYMPYAGLTTDIIVGFPGESDEDFEDSMSIVREVEFSKVHVFKYSKRKNTPAADRA 345

Query: 380 EQVDENVK---AERLLCLQ----KKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS 432
           +QVD N+K   +E L+ LQ    KK RE+ +        + ++VL E+   ++G   G +
Sbjct: 346 DQVDGNIKIKRSEELIKLQDQYLKKFREKNMP-------RTLKVLFEEF--DQGYYFGYT 396

Query: 433 PWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
                V + S    I  I+ VR+ D +    +GELV
Sbjct: 397 DNYIRVKVKSDKDLINKILDVRLVDNE-EVAFGELV 431


>gi|126698925|ref|YP_001087822.1| radical SAM superfamily protein [Clostridium difficile 630]
 gi|123174606|sp|Q18BJ2|RIMO_CLOD6 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|115250362|emb|CAJ68184.1| Ribosomal protein S12 methylthiotransferase [Clostridium difficile]
          Length = 444

 Score =  208 bits (530), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 138/454 (30%), Positives = 239/454 (52%), Gaps = 27/454 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +  ++S GC  N+ D+  M  +  ++GY+ +   ++AD+I++NTC   E A ++    + 
Sbjct: 3   KIALESLGCSKNLVDAEIMMGILNNKGYKLIGDFEEADVIIVNTCGFIESAKQESIDTII 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
               LK    K G   L++V GC+AQ   EE+    P ++ +VG  +Y  + ++L+    
Sbjct: 63  NFAELK----KTGNLKLLIVTGCLAQRYSEELKTEIPEIDAIVGTGSYQNIDKILKELSE 118

Query: 146 GKRVV---DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
             ++V   D ++   +   R       Y       A+L I EGC   CT+C++P  RG  
Sbjct: 119 IHQIVSLNDIEFVFNEDLPR-------YISTPSYMAYLKIGEGCSNNCTYCIIPKLRGKY 171

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR    ++ EA+KL ++GV E+ ++ Q+   + G  L G K   S+LL  L++I G   
Sbjct: 172 RSRKFEDIIKEAKKLAESGVKELVVIAQDTTKY-GFDLYG-KERLSELLEELAKIDGFKW 229

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R   S+P  +++ LI+     D +  Y  +P+Q  S+ ILK MNR+ T  +    I+ I
Sbjct: 230 IRVMYSYPESITEELIQVIKKYDNICSYFDMPIQHASNNILKLMNRKTTKEDILNKINLI 289

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           RS  PD  + +  IVGFPGET+DDF+  +D V+++ + +  +F YS    TP   +   +
Sbjct: 290 RSNIPDAILRTTIIVGFPGETEDDFKQLVDFVEEVKFDRLGAFAYSREEDTPADRLPNHI 349

Query: 383 DENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK---GKLVGRSPWLQ 436
           DE VK +R   L+ +Q+K+ E+    ND  +G+  EVLIE+  ++    G+  G +  + 
Sbjct: 350 DEEVKIQRRDTLMMIQQKISEE---LNDKKIGKTYEVLIEEQIEDNVYTGRTQGDAEEID 406

Query: 437 SVVL--NSKNHNIGDIIKVRITDVKISTLYGELV 468
           S+V   +  N  +G+ + V+I D     L G+++
Sbjct: 407 SIVYVKSVDNLEVGEFVSVQINDAMEYDLMGDVL 440


>gi|310658985|ref|YP_003936706.1| hypothetical protein CLOST_1681 [Clostridium sticklandii DSM 519]
 gi|308825763|emb|CBH21801.1| conserved protein of unknown function [Clostridium sticklandii]
          Length = 442

 Score =  208 bits (530), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 147/454 (32%), Positives = 234/454 (51%), Gaps = 29/454 (6%)

Query: 28  FVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRI 87
           F+ + GC  N+ DS  M ++    G ++V+S   AD+ V+NTC   E A E+  + +   
Sbjct: 6   FISTLGCSKNLVDSEVMLNILLENGLQKVDSPQLADIAVINTCGFIESAKEESINEI--- 62

Query: 88  RNLKNSRIKEGGDLL-VVVAGCVAQAEGEEILRRSPIVNVVVGPQTY---YRLPELLERA 143
             L+ ++ K+ G L  ++V GC++Q   EE+ +  P V+  +G  ++   Y + + LE  
Sbjct: 63  --LEIAKYKQIGKLKHLIVTGCLSQRYSEELKKELPEVDSFLGTTSFEHIYNIIQGLELG 120

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
                ++D ++ ++   +R S++   Y      TAFL I EGCD  CT+C++P  RG   
Sbjct: 121 ENNSLILDINHDLKPDSKR-SLLTEKY------TAFLKIAEGCDNLCTYCIIPKLRGKYR 173

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD--GEKCTFSDLLYSLSEIKGLV 261
           SR L  +V EA+ L  +GV EI ++ Q+   +   GLD   EK +   LL  L+ I+ L 
Sbjct: 174 SRKLEDIVKEAKVLAASGVKEIIVIAQDTTKY---GLDIYNEK-SLPRLLRELNAIEDLN 229

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
            +R+  S+P D+   LI    + D +  Y  +P+Q   D++LK MNR+ T       I  
Sbjct: 230 WIRFLYSYPEDIDLDLILTVKESDKVCSYFDMPIQHSHDQVLKRMNRKTTGKHIEDTIAL 289

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           IR+  P+  + +  I GFPGETD++F A  D V KI + +   F YS   GTP + M  Q
Sbjct: 290 IRAHIPEAVLRTTLITGFPGETDEEFDALYDFVKKIEFDRLGVFAYSKEEGTPAAIMSGQ 349

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQS 437
           V E +K ER   + +  +E  +  N A +G+  EV+IEK   E      RS    P +  
Sbjct: 350 VAEEIKEERKNKIMQLQQEISLRKNQALIGKDFEVIIEKE-IEPNLYEARSYRDVPEIDG 408

Query: 438 VVLNS--KNHNIGDIIKVRITDVKISTLYGELVV 469
           ++      +HN G+ IKV I D     L G+ ++
Sbjct: 409 IIYVKALASHNEGEFIKVTIKDAMEYDLLGDEII 442


>gi|297183256|gb|ADI19395.1| 2-methylthioadenine synthetase [uncultured Spirochaetales bacterium
           HF0500_06B09]
          Length = 455

 Score =  208 bits (530), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 130/398 (32%), Positives = 213/398 (53%), Gaps = 21/398 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R  V++ GC++N ++   ++  F  +GY  V+S D AD+IV+N+C +  +A  K  + L 
Sbjct: 6   RVTVETLGCRLNAFEGDALKADFSRRGYRVVDSGDPADVIVINSCTVTGQADRKSRNALY 65

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R R + +  + E    LVV  GC+A  + +  +   P V+ VV  +    +  +++ A  
Sbjct: 66  RARRIGD--LDEDSRPLVVATGCMATGQ-QATVSALPGVDYVVDNEHKAGIAAIVD-AHL 121

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
              +          F      D G +  R    FL IQ+GCD  C+FC++P+ RG  ISR
Sbjct: 122 SGEISPPSAVPSGPFA----YDQGEHTARA-RRFLKIQDGCDNRCSFCIIPFVRGRAISR 176

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            L+ ++DEAR++ID+G  EI + G N+  +   G++     F+ L+  L  + G  R+R 
Sbjct: 177 PLAAILDEARQIIDDGFHEIVITGVNIGRYLHDGVN-----FATLIEKLLALPGQFRVRL 231

Query: 266 TTSHPRDMSDCLIKAHGDL---DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           ++  P    D  I    DL   + L P+LHL +QSGSDR+L +M R +    + Q+ID  
Sbjct: 232 SSLEP----DHQIAPAIDLLTDERLCPHLHLCLQSGSDRVLLAMRRLYNLESFEQLIDNA 287

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R VRPD+  ++D +VGFPGETD DF AT   V+++G+    +F+Y+ R GT  + M  QV
Sbjct: 288 RHVRPDLNATTDILVGFPGETDADFAATCRAVERLGFTHCHTFRYAKRNGTRAARMENQV 347

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
           D+  K  R   ++K     + ++    +G   ++L+E 
Sbjct: 348 DDATKQRRSNTVRKLAATNRAAYLRRLLGNKQKLLVES 385


>gi|312797207|ref|YP_004030129.1| tRNA 2-methylthioadenosine synthase [Burkholderia rhizoxinica HKI
           454]
 gi|312168982|emb|CBW75985.1| tRNA 2-methylthioadenosine synthase [Burkholderia rhizoxinica HKI
           454]
          Length = 288

 Score =  208 bits (530), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 112/233 (48%), Positives = 152/233 (65%), Gaps = 13/233 (5%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           +P++ ++K++GCQMN YDS +M D+   ++G  + +S +DAD+I+ NTC IREKA EKV+
Sbjct: 1   MPKKVYIKTFGCQMNEYDSDKMVDVLGAAEGLIKTDSPEDADVILFNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S LGR+R LK  R     DLL+ V GCVA  EG  I+ R+P V++V GPQT +RLP +++
Sbjct: 61  SDLGRVRELKQVRP----DLLIGVGGCVASQEGAAIVARAPYVDLVFGPQTLHRLPAMID 116

Query: 142 RARF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
             R  G   VD  +   +KF+ L        R  G TAF++I EGC K+C++CVVPYTRG
Sbjct: 117 ARRASGHAQVDISFPEIEKFDNLPP-----PRVEGPTAFVSIMEGCSKYCSYCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG--EKCTFSDLL 251
            E+SR L  V+ E   L D GV E+TLLGQNVNA+RG    G  E   FS L+
Sbjct: 172 EEVSRPLDDVLTEVAGLADQGVREVTLLGQNVNAYRGAISAGAAEIADFSTLI 224


>gi|253578849|ref|ZP_04856120.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251849792|gb|EES77751.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 445

 Score =  208 bits (529), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 145/457 (31%), Positives = 231/457 (50%), Gaps = 32/457 (7%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC  N+ DS  M  +    G+E V+   +A+ IV+NTC     A E+  + + 
Sbjct: 2   KLLFVSLGCDKNLVDSEEMLGLLTGNGFEIVDDETEAEAIVVNTCCFINDAKEESVNTIL 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +   K    K G   ++VV GC+AQ    EI+   P V+ V+G  +Y  + + +  A  
Sbjct: 62  EMAEYK----KTGSCKVLVVTGCMAQRYKNEIIEEVPEVDAVLGTTSYGDILKAIREAME 117

Query: 146 GKRVV---DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           GK      D DY + +K  +  +  GG+        +L I EGCDK CT+C++P  RG  
Sbjct: 118 GKHFQEFKDIDY-LPEKLGKRVLTTGGH------FGYLKIAEGCDKHCTYCIIPKLRGKF 170

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            S  + ++V +A+++ + GV E+ L+ Q    + G  + G+K +   LL  L +IKG+  
Sbjct: 171 RSVPMERLVTQAKEMAEEGVKELILVAQETTVY-GTDIYGKK-SLHILLKELCKIKGIRW 228

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R    +P ++ D LI+   +   +  YL LP+Q  SDRILK M RR T  E  +I++++
Sbjct: 229 IRVLYCYPEEIYDELIQTMKEEKKICHYLDLPIQHASDRILKRMGRRTTQAELVEIVNKL 288

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R   PDI + +  I GFPGET +D    M  VD++ + +   F YSP   TP + M +QV
Sbjct: 289 RREIPDIVLRTTLISGFPGETQEDHEELMSFVDEMEFDRLGVFTYSPEEDTPAATMPDQV 348

Query: 383 DENVKAER---LLCLQKKLREQQVSFNDAC--VGQIIEVLIEKHGKEKGKLVGRS----P 433
            E VK  R   ++ LQ     Q++S++     +GQ + V+IE    ++   +GR+    P
Sbjct: 349 AEEVKEARRDEIMELQ-----QEISYDKGTDRIGQELLVMIEGKVADESAYIGRTYGDAP 403

Query: 434 WLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468
            +   +       +  GD  KVR+T      L GEL 
Sbjct: 404 KVDGYIFVQTGELLMTGDFAKVRVTGALEYDLIGELA 440


>gi|239623774|ref|ZP_04666805.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239521805|gb|EEQ61671.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 448

 Score =  208 bits (529), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 144/453 (31%), Positives = 235/453 (51%), Gaps = 23/453 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + F  S GC  N+ D+ +M  +    G+   +   +AD+I++NTC     A E+  + + 
Sbjct: 2   KLFCVSLGCDKNLVDTEKMLGLLGGTGFTFTDDEMEADVILVNTCCFIGDAKEESVNTIL 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +  LK    +EG    ++V GC+AQ   +EIL   P V+ ++G  +Y  +  ++++   
Sbjct: 62  DMARLK----EEGACRALIVTGCLAQRYKQEILDEIPEVDAILGTTSYEDVAGIVKQVLE 117

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           GK +     S  D  E      G      G  AFL I EGCDK CT+C++PY RG   S 
Sbjct: 118 GKGITHLT-SFHDLGELPDTQAGRVVTTGGYYAFLKIAEGCDKRCTYCIIPYLRGPYRSV 176

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            + Q+++EAR+L   GV E+ L+ Q    + GK + G K +   LL+ L++I G+  +R 
Sbjct: 177 PMEQLLEEARQLASGGVKELILVAQETTLY-GKDIYGGK-SLPKLLHELAQIPGIQWIRI 234

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
              +P +++D LI+A    + +  YL +P+Q  S+RILK M RR    E  + I ++R  
Sbjct: 235 QYCYPEEITDELIEAIRSEEKVCHYLDIPIQHASNRILKRMGRRTNREELTERIAKLRKE 294

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            PDIA+ +  I GFPGET  D    MD V+++ + +   F YS    TP  +  +QV + 
Sbjct: 295 IPDIALRTTMISGFPGETQADHEELMDFVNEMEFERLGVFAYSAEEDTPAYSYPDQVPQE 354

Query: 386 VKAER---LLCLQKKLREQQVSFN--DACVGQIIEVLIEKHGKEKGKLVGRS----PWLQ 436
           VK ER   ++ LQ     Q ++F   +  VG+I+ VLIE    ++   VGR+    P + 
Sbjct: 355 VKEERRDEIMELQ-----QDIAFGHCEDMVGRILTVLIEGKVVDEPVYVGRTYMDAPGVD 409

Query: 437 SVVLNSKNHNI--GDIIKVRITDVKISTLYGEL 467
            ++  +    +  GD ++V++T      L GE+
Sbjct: 410 GLIFVNAEMELMSGDFVRVKVTGAAEYDLIGEV 442


>gi|153810776|ref|ZP_01963444.1| hypothetical protein RUMOBE_01160 [Ruminococcus obeum ATCC 29174]
 gi|149833172|gb|EDM88254.1| hypothetical protein RUMOBE_01160 [Ruminococcus obeum ATCC 29174]
          Length = 445

 Score =  208 bits (529), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 146/447 (32%), Positives = 224/447 (50%), Gaps = 22/447 (4%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ DS  M  +    G+E V+S ++AD IV+NTC     A E+  + +  +   
Sbjct: 7   SLGCDKNLADSEEMLGLLTGNGHEIVDSEEEADAIVINTCCFIHDAKEESVNTILEMAEY 66

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG---K 147
           K    K G   +++V GC+AQ   EEI    P V+ V+G  +Y  + + L  A  G   +
Sbjct: 67  K----KTGPCKILIVTGCMAQRYKEEITEEIPEVDAVLGTTSYGDIVKALNEAEAGHVFQ 122

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
              D +   ED   R+ I  GG+        +L I EGCDK CT+C++P  RG   S   
Sbjct: 123 EFKDINALPEDSGRRV-ITTGGH------FGYLKIAEGCDKHCTYCIIPSLRGKFRSVPE 175

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
            +++ +A  +   GV E+ L+ Q    + G  L G+K T   LL  L +IKG+  +R   
Sbjct: 176 ERLLKQAEYMASQGVRELILVAQETTVY-GTDLYGKK-TLHILLKKLCQIKGIRWIRVLY 233

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
            +P ++ D LI+   +   +  YL LP+Q  SDRILK M RR +  +   II ++R   P
Sbjct: 234 CYPEEIYDELIQVMKEEKKICHYLDLPIQHASDRILKRMGRRTSKAQLVGIITKLRREIP 293

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
           DI + +  I GFPGET++D +  M+ VD++ + +   F YSP  GTP   M EQV E +K
Sbjct: 294 DIVLRTSLITGFPGETEEDHQELMEFVDEMEFDRLGVFTYSPEEGTPAETMEEQVPEELK 353

Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVLNSK 443
            ER   + +  +E  +   +  +GQ + V+IE     +   +GR+    P +   +    
Sbjct: 354 EERRDEIMELQQEISLEKGNDRIGQELLVMIEGKVSGESAYIGRTYGDAPKVDGYMFVQT 413

Query: 444 NHNI--GDIIKVRITDVKISTLYGELV 468
              +  GD  KV++T      L GEL 
Sbjct: 414 GELLVTGDFAKVKVTGAMEYDLIGELA 440


>gi|266623302|ref|ZP_06116237.1| RNA modification enzyme, MiaB family [Clostridium hathewayi DSM
           13479]
 gi|288864920|gb|EFC97218.1| RNA modification enzyme, MiaB family [Clostridium hathewayi DSM
           13479]
          Length = 446

 Score =  208 bits (529), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 141/453 (31%), Positives = 231/453 (50%), Gaps = 25/453 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC  N+ D+  M  +    GY   +   +AD+IV+NTC     A E+  + + 
Sbjct: 2   KLLCISLGCDKNLVDTEMMLGLLNRDGYTFTDDEYEADVIVINTCCFIGDAKEESVNTI- 60

Query: 86  RIRNLKNSRIKEGGDL-LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
               L+ +++KE G    ++V GC+AQ   +EI+   P V+ ++G  TY  +  +L    
Sbjct: 61  ----LEMAQMKEVGKCKALIVTGCLAQRYKQEIVDEIPEVDGILGTTTYDEISHVLAETL 116

Query: 145 FGKRVV----DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
            G+  V    D D   E K +R+    G Y       AFL I EGCDK CT+C++P  RG
Sbjct: 117 DGREHVQCFHDLDIIPEVKTDRVITTGGHY-------AFLKIAEGCDKHCTYCIIPSLRG 169

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
              S  + ++V EA+ L D GV E+ L+ Q    + G  L G+K +  +LL  L  I G+
Sbjct: 170 NFRSVPMERLVSEAQSLADQGVKELILVAQETTLY-GVDLYGKK-SLPELLKKLCRISGI 227

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
             +R    +P +++D LI+     D +  Y+ +P+Q  SD IL+ M RR +  + +++I 
Sbjct: 228 QWIRIQYCYPEEITDELIQTMKTEDKICHYIDMPIQHASDTILRRMGRRTSRAQLKEMIG 287

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++RS  PDIAI +  I GFPGET++D    M+ VD++ + +   F YS    TP +   +
Sbjct: 288 KLRSEIPDIAIRTTLISGFPGETEEDHEILMEFVDEMEFERLGVFAYSAEEDTPAAGFPD 347

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQ 436
           QV + VK ER   + +  +E     + + VG+ +EV+IE    ++   VGR+    P + 
Sbjct: 348 QVLQEVKEERRDAIMELQQEISFDHSQSMVGRSLEVMIEGKVADENAYVGRTYMDGPGVD 407

Query: 437 SVVLNSKNHNI--GDIIKVRITDVKISTLYGEL 467
            ++       +  G  ++ R+T      L GE+
Sbjct: 408 GMIFIQTGEELMSGTFVRARVTGALEYDLIGEI 440


>gi|302386329|ref|YP_003822151.1| MiaB-like tRNA modifying enzyme YliG [Clostridium saccharolyticum
           WM1]
 gi|302196957|gb|ADL04528.1| MiaB-like tRNA modifying enzyme YliG [Clostridium saccharolyticum
           WM1]
          Length = 487

 Score =  208 bits (529), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 146/453 (32%), Positives = 230/453 (50%), Gaps = 25/453 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC-HIREKAAEKVYSFL 84
           +    S GC  N+ D+  M  +    GY   +   +AD+IV+NTC  I +   E + + L
Sbjct: 43  KLLCVSLGCDKNLVDTEMMLGLLNKDGYTFTDDEYEADVIVINTCCFIGDAKEESINTIL 102

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
              +   + + K      ++V GC+AQ   +EI+   P V+ ++G  TY  +  +L  A 
Sbjct: 103 EMAQRKGDGKCK-----ALIVTGCLAQRYKQEIIDEIPEVDGILGTSTYDEISHVLSDAL 157

Query: 145 FGK----RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
            GK    R  D D   E + ER+    G Y       AFL I EGCDK CT+C++P  RG
Sbjct: 158 GGKEHVQRFHDLDGLPEVETERILTTGGHY-------AFLKIAEGCDKHCTYCIIPSLRG 210

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
              S  + ++V EA +L + GV E+ L+ Q    + G  L GEK     LL  L  I G+
Sbjct: 211 NYRSVPMERLVKEAERLAEMGVKELILVAQETTLY-GLDLYGEK-ALPKLLKKLCRISGI 268

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
             +R    +P +++D LI+   + + +  YL LP+Q  SDRILK M RR T  + ++I++
Sbjct: 269 RWIRIQYCYPEEITDELIQTIKEEEKVCNYLDLPIQHASDRILKRMGRRTTKAQLQEIVE 328

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R   PDIA+ +  I GFPGET +D    M+ VD++ + +   F YS    TP +   +
Sbjct: 329 KLRKEIPDIALRTTLISGFPGETQEDHEELMEFVDEMEFQRLGVFVYSAEEDTPAAEFPD 388

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQ 436
           QV + VK ER   + +  +E    F+ + +G+ +EV+IE    ++   VGR+    P + 
Sbjct: 389 QVLQEVKEERRDAIMELQQEISYDFSRSMIGKTLEVMIEGKVADENAYVGRTYMDGPGVD 448

Query: 437 SVVLNSKNHNI--GDIIKVRITDVKISTLYGEL 467
            ++    +  +  GD   VR+T      L GEL
Sbjct: 449 GMIFVQTDEELMSGDFASVRVTGAMEYDLIGEL 481


>gi|325265342|ref|ZP_08132066.1| 2-methylthioadenine synthetase [Clostridium sp. D5]
 gi|324029343|gb|EGB90634.1| 2-methylthioadenine synthetase [Clostridium sp. D5]
          Length = 440

 Score =  208 bits (529), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 145/451 (32%), Positives = 235/451 (52%), Gaps = 30/451 (6%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ D+  M  +  S+GY+  +    AD+IV+NTC     A E+    +  +   
Sbjct: 7   SLGCDKNLVDTEVMLGLLASRGYQMTDDETAADIIVINTCCFIHDAKEESIQNILEMAEY 66

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
           K    KEG    +VV GC+A+   +EIL   P V+ V+G  +Y ++ E ++ A  G+  V
Sbjct: 67  K----KEGSLKALVVTGCLAERYRQEILDEIPEVDAVLGTTSYDKILEAVDGALKGQHSV 122

Query: 151 ---DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
              D +   E +  RL    G +       A+L I EGCDK CT+C++P  RG   S  +
Sbjct: 123 TISDINGIPEVETNRLVTTGGHF-------AYLKIAEGCDKHCTYCIIPKIRGNFRSVPM 175

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
            +++ EA+ L + GV E+ L+ Q    + GK + GEK +   LL  L  ++G+  +R   
Sbjct: 176 EKLLKEAQYLAEQGVKELILVAQETTLY-GKDIYGEK-SLHLLLKELCRVQGIRWIRVLY 233

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
            +P +++D LI+   + + +  YL LP+Q  +D IL+ M RR +  E   II ++RS  P
Sbjct: 234 CYPEEITDELIQVMKEEEKICHYLDLPIQHANDEILRRMGRRTSKQELTDIICKLRSEIP 293

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
           DI + +  I GFPGET +     M+ VD++ + +   F YSP   TP + M +Q+D+ VK
Sbjct: 294 DICLRTTLITGFPGETKEQHEELMEFVDEMEFDRLGVFTYSPEEDTPAALMTDQIDDEVK 353

Query: 388 AERLLCLQKKLRE--QQVSFNDA--CVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVV 439
            ER    Q  L E  Q+++F++A   VG+ + V+IE    ++   VGR+    P +  ++
Sbjct: 354 EER----QADLMELQQEIAFDNAERMVGREVLVMIEGKVADENAYVGRTYRDAPNVDGLI 409

Query: 440 LNSKNHNI--GDIIKVRITDVKISTLYGELV 468
             +    +  GD  +V ++      L G LV
Sbjct: 410 FVNTEEELMSGDFARVNVSGAVDYDLIGGLV 440


>gi|119510100|ref|ZP_01629240.1| hypothetical protein N9414_19797 [Nodularia spumigena CCY9414]
 gi|119465287|gb|EAW46184.1| hypothetical protein N9414_19797 [Nodularia spumigena CCY9414]
          Length = 442

 Score =  207 bits (528), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 141/452 (31%), Positives = 227/452 (50%), Gaps = 35/452 (7%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V   GC+ N  D+  M  +    GY    + + AD +++NTC   E A ++    L  + 
Sbjct: 9   VSHLGCEKNRIDTEHMLGLLVEAGYSVDTNEELADYVIVNTCSFIEAARQESVRTLVELA 68

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
                         VV+ GC+AQ   E++L   P    +VG   Y+++  ++ER   G++
Sbjct: 69  EANKK---------VVITGCMAQHFQEQLLEELPEAVALVGTGDYHKIVNVIERVEQGEQ 119

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVT---AFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           V   + S+E  +    I D    R R  T   A+L + EGCD  C FC++PY RG + SR
Sbjct: 120 V--KEVSLEPTY----IADETTPRYRTTTEGVAYLRVAEGCDYRCAFCIIPYLRGNQRSR 173

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIK-GLVRL 263
           ++  +V EA +L   GV EI L+ Q    +   GLD   K   ++LL +L ++    +R+
Sbjct: 174 TIESIVAEAEQLASQGVQEIILISQITTNY---GLDIYGKPKLAELLRALGKVDVPWIRM 230

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
            Y  ++P  ++  +I+A  +   ++PYL LP+Q     IL+SMNR         II+RI+
Sbjct: 231 HY--AYPTGLTPDVIEAIQETHNVLPYLDLPLQHSHPDILRSMNRPWQGRVNDGIIERIK 288

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           +  P+  + + FIVGFPGET + F    + V +  +     F +SP  GTP   +  Q+ 
Sbjct: 289 AALPNAVLRTTFIVGFPGETAEHFEHLREFVQRHEFDHVGVFTFSPEEGTPAYKLANQLP 348

Query: 384 ENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQ 436
           ++V  ER   L+ LQ+ +  ++   N   +G+I+EVLIE+   E GKL+GR    SP + 
Sbjct: 349 QSVMDERWHKLMALQEPIAGKK---NQQEIGKIVEVLIEQENPETGKLIGRSGRFSPEVD 405

Query: 437 SVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
             +       +G I+ V I       LYG++V
Sbjct: 406 GQIYVDGEAKLGTIVPVAIHSADTYDLYGQVV 437


>gi|197303727|ref|ZP_03168764.1| hypothetical protein RUMLAC_02456 [Ruminococcus lactaris ATCC
           29176]
 gi|197297247|gb|EDY31810.1| hypothetical protein RUMLAC_02456 [Ruminococcus lactaris ATCC
           29176]
          Length = 438

 Score =  207 bits (528), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 136/439 (30%), Positives = 243/439 (55%), Gaps = 29/439 (6%)

Query: 33  GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92
           GC++N Y++  M++M    GYE V   + AD+ V+NTC +   A  K    L R R +  
Sbjct: 11  GCKVNAYETEAMQEMLEKAGYEIVPFKEGADVYVINTCTVTNIADRKSRQMLHRARKM-- 68

Query: 93  SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE-----RARFGK 147
                  D +VV AGC  QA+  ++      +++V+G      L  +L+     RA  G+
Sbjct: 69  -----NPDAVVVAAGCYVQAQEGKV---DSCIDIVLGNNKKKDLIRILDEYRKSRAESGR 120

Query: 148 -RVVDTDYSVED-----KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
            + +  D  +ED     ++E L++   G + +    A++ +Q+GC++FCT+C++PY RG 
Sbjct: 121 EKEILPDVELEDIGHTKEYESLNLTRPGDHTR----AYIKVQDGCNQFCTYCIIPYARGR 176

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
             SRS+  V +E R L +NG  E+ L G +++++ G   D E+    DL+ ++ +I+G+ 
Sbjct: 177 VRSRSMEDVTEEVRTLAENGYKEVVLTGIHLSSY-GIDFDKERHLL-DLIRAVHQIEGIE 234

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R  +  P  +++   +A   L  + P+ HL +QSG +  LK MNRR+T+ EY +    
Sbjct: 235 RIRLGSLEPGIITEEFAEAISKLPKMCPHFHLSLQSGCNATLKRMNRRYTSEEYAERCGI 294

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R    + A+++D IVGFPGET+++F A+ + VD I + +   FKYS R GT  + M +Q
Sbjct: 295 LRKYFENPALTTDVIVGFPGETEEEFEASRNFVDSIDFYETHIFKYSRREGTKAAVMPDQ 354

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL--VGRSPWLQSVV 439
           V E  K+ R   + +   +++ ++ ++ +G+ +EVL+E+  +  G++   G +     + 
Sbjct: 355 VSEGKKSARSAEMIEMGEQKRRAYEESFIGKEVEVLVEEEIERNGEIFWTGHTKEYIKIA 414

Query: 440 LNSKNHNIGDIIKVRITDV 458
           L S+ +    I+KV+I D 
Sbjct: 415 LQSRENLRNCIVKVQIEDA 433


>gi|6841556|gb|AAF29131.1|AF161516_1 HSPC167 [Homo sapiens]
          Length = 586

 Score =  207 bits (528), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 150/501 (29%), Positives = 244/501 (48%), Gaps = 66/501 (13%)

Query: 17  IVDQCIVPQR-FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREK 75
           ++D+ +  QR  ++++YGCQMNV D+     +    GY R +++ +AD+I+L TC IREK
Sbjct: 91  MMDELLGRQRKVYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCSIREK 150

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135
           A + +++ L +++ LK  R +    L + + GC+A+   EEIL R  +V+++ GP  Y  
Sbjct: 151 AEQTIWNRLHQLKALKTRRPRSRVPLRIGILGCMAERLKEEILNREKMVDILAGPDAYRD 210

Query: 136 LPE-LLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCV 194
           LP   L  +R  K                    G        +AF++I  GCD  C++C+
Sbjct: 211 LPGCWLMLSRASKLPTCCSLWTRPMLMSCQSRQGA----SATSAFVSIMRGCDNMCSYCI 266

Query: 195 V------------PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR------ 236
           V            P++RG E             +    G+ E+TLLGQNVN++R      
Sbjct: 267 VLSPGAGRGVGLLPHSRGSE-------------EAFLAGLKEVTLLGQNVNSFRDNSEVQ 313

Query: 237 ---------GKGLDGEKCT------FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAH 281
                     +G      T      F+ LL  +S +   +R+R+T+ HP+D  D +++  
Sbjct: 314 FNSAVPTNLSRGFTTNYKTKQGGLRFAHLLDQVSRVDPEMRIRFTSPHPKDFPDEVLQLI 373

Query: 282 GDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPG 341
            + D +   +HLP QSGS R+L++M R ++   Y +++  IR   P +++SSDFI GF G
Sbjct: 374 HERDNICKQIHLPAQSGSSRVLEAMRRGYSREAYVELVHHIRESIPGVSLSSDFIAGFCG 433

Query: 342 ETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML-EQVDENVKAERLLCLQKKLRE 400
           ET++D   T+ L+ ++ Y   F F YS R  T   + L + V E VK  RL  L    RE
Sbjct: 434 ETEEDHVQTVSLLREVQYNMGFLFAYSMRQKTRAYHRLKDDVPEEVKLRRLEELITIFRE 493

Query: 401 QQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPW-LQSVVLNSKNHNI----------- 447
           +    N   VG    VL+E   K     L GR+   L+ +  +++  ++           
Sbjct: 494 EASKANQTSVGCTQLVLVEGLSKRSATDLCGRNDGNLKVIFPDAEMEDVNNPGLRVRAQP 553

Query: 448 GDIIKVRITDVKISTLYGELV 468
           GD + V+IT     TL G ++
Sbjct: 554 GDYVLVKITSASSQTLRGHVL 574


>gi|331083857|ref|ZP_08332966.1| ribosomal protein S12 methylthiotransferase rimO [Lachnospiraceae
           bacterium 6_1_63FAA]
 gi|330403282|gb|EGG82842.1| ribosomal protein S12 methylthiotransferase rimO [Lachnospiraceae
           bacterium 6_1_63FAA]
          Length = 446

 Score =  207 bits (527), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 139/445 (31%), Positives = 226/445 (50%), Gaps = 20/445 (4%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ DS  M  M    GY   N   +A++IV+NTC     A E+  + +     L
Sbjct: 8   SLGCDKNLADSEEMLGMLVENGYTLTNDETEAEIIVVNTCAFIHDAKEESINSI-----L 62

Query: 91  KNSRIKEGGDL-LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149
           + +R K  G L +++V GC+AQ   EEI++  P V+ V+G  ++  + + L++   G+R 
Sbjct: 63  EMARYKTEGVLKVLLVTGCLAQRYKEEIIKEIPEVDAVLGTTSFGDIIKALDKVFEGERY 122

Query: 150 VD-TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           ++  D +   +  +  ++  G     G   +L I EGCDK CT+C++P  RG   S  + 
Sbjct: 123 LEFKDINALTEISKKRVLTTG-----GYYGYLKIAEGCDKRCTYCIIPKLRGNYRSIPME 177

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
           Q++ +A  L   GV E+ L+ Q    + GK + G+KC    LL  L +I G+  +R    
Sbjct: 178 QLISQAEYLAGQGVRELILVAQETTVY-GKDIYGKKC-LHKLLKELCKIPGIQWIRILYC 235

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
           +P ++   LI+   +   +  YL LP+Q  SD+ILK M RR T  E   I+  +R   PD
Sbjct: 236 YPEEIYPELIQTMKEEKKICHYLDLPIQHCSDKILKKMGRRTTKQELIDIVTLLRKEIPD 295

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           I + +  I GFPGET++D    M+ +D + + +   F YS    TP +NM  Q+ E VK 
Sbjct: 296 IILRTTLITGFPGETEEDHEELMEFIDTMEFDRLGVFTYSAEEDTPAANMPNQIAEEVKQ 355

Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVLNSKN 444
           +R   L +  +E  +   +  +G  +EV+IE    ++   VGR+    P +   +  + +
Sbjct: 356 DRQAELMELQQEISIDKGNDKIGTCVEVMIEGKVADENAYVGRTYGDAPNVDGYIFINTD 415

Query: 445 HNI--GDIIKVRITDVKISTLYGEL 467
             +  GD  +V +T      L GEL
Sbjct: 416 TELMSGDFARVHVTGALEYDLIGEL 440


>gi|300813542|ref|ZP_07093873.1| MiaB-like protein [Peptoniphilus sp. oral taxon 836 str. F0141]
 gi|300512290|gb|EFK39459.1| MiaB-like protein [Peptoniphilus sp. oral taxon 836 str. F0141]
          Length = 431

 Score =  207 bits (527), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 138/456 (30%), Positives = 247/456 (54%), Gaps = 35/456 (7%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERV-NSMDDADLIVLNTCHIREKAAEKVY 81
           + + F + + GC++N Y+S  M ++F   GY +V N  D AD+ ++NTC +   +  K  
Sbjct: 1   MAKTFSILTLGCKVNQYESEAMAELFEKNGYIQVDNDTDVADVYIVNTCTVTNLSDRKSR 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
            ++ R +       +E  D  V V GC AQ   +E+  +   V+VV+G     ++ +L+E
Sbjct: 61  QYIRRAK-------RENPDSTVAVVGCYAQVAPKEV-EKIEGVDVVIGTSERSKIVDLIE 112

Query: 142 RARFGKRVVDT--DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
            A+   + ++   D   +  F+ + I D  +++ R   +++ +Q+GC+++CT+C++PY R
Sbjct: 113 EAKEEDKKINIVRDIKKDRDFQFIKI-DENFHKTR---SYMKVQDGCNRYCTYCIIPYAR 168

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G   SR +   V EA +L + G  EI L G +V ++   G+D       DL+ +++E+ G
Sbjct: 169 GTIRSRRIGDCVREAIRLANAGYKEIILTGIHVGSY---GVDLGPVRLIDLIEAIAEVDG 225

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           + R+R ++  P  +S+  ++       L  + HL +QSGS+++LK MNR +   E+ +  
Sbjct: 226 IERIRLSSVEPNIISEDFMRRAIACSKLCDHFHLSLQSGSNKVLKDMNRHYNREEFIEKT 285

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
             I+   P   +++D IVGFPGE+D+DF  +M +V ++ +++   FKYS R  TP ++  
Sbjct: 286 KIIKKYMPYAGLTTDIIVGFPGESDEDFEDSMSIVREVEFSKVHVFKYSKRKNTPAADRA 345

Query: 380 EQVDENVK---AERLLCLQ----KKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS 432
           +QVD N+K   +E L+ LQ    KK RE+ +        + ++VL E+   ++G   G +
Sbjct: 346 DQVDGNIKIKRSEELIKLQDQYLKKFREKNMP-------RTLKVLFEEF--DQGYYFGYT 396

Query: 433 PWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
                V + S    I  I+ VR+ D +   L GELV
Sbjct: 397 DNYIRVKVKSDKDLINKILDVRLVDNEEVAL-GELV 431


>gi|293402175|ref|ZP_06646313.1| 2-methylthioadenine synthetase [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291304282|gb|EFE45533.1| 2-methylthioadenine synthetase [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 433

 Score =  207 bits (527), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 135/443 (30%), Positives = 217/443 (48%), Gaps = 26/443 (5%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ DS +M  M  S  +E V    +A+ I++NTC     A E+  + + ++   
Sbjct: 7   SLGCSKNLVDSEKMMGMLKSGHHELVKDAQEAEAIIINTCGFINSAKEEAINTIFKMAEY 66

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
           K    K+     ++V GC+AQ   E +    P ++ V+  + Y  L E+L     GK +V
Sbjct: 67  KKQNCKK-----LIVVGCLAQRYKETLEAEIPEIDAVISIREYPHLHEILHSLLDGKELV 121

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
               S     ER+          +  TA+L I EGC   CT+C +P  RG  ++  + Q+
Sbjct: 122 SYGKS-----ERMV-------SSKPWTAYLKIAEGCSNRCTYCAIPLIRGDNVTFPMEQL 169

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270
           V EA++L   GV E+ L+ Q+   + G  L G++ +  +LL  L EI G   +R    +P
Sbjct: 170 VQEAKELAQRGVKELVLIAQDTTKY-GVDLYGKR-SLLELLQKLHEIDGFHWIRILYMYP 227

Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330
            ++ + LI+    L  ++PY  +P+Q  ++R+L +MNRR T  E   +I +IR    D  
Sbjct: 228 DEIDEDLIEGMAKLPKVLPYFDIPMQHANNRMLAAMNRRGTKEEVLALIKKIRKTYADPT 287

Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER 390
           + + FIVGFP ET +DF   M  V+ + + +  +F YSP   TP   M + V E  K  R
Sbjct: 288 LRTTFIVGFPSETQEDFDELMQFVEDVHWDRMGAFTYSPEEDTPAFEMEQSVAEEEKQRR 347

Query: 391 LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQS------VVLNSKN 444
           L  L ++  E  ++     +G ++EVL+E      GK  GR            V+  SK 
Sbjct: 348 LAILMQRQEEISLANQQKRIGTVMEVLVEAQDGLTGKYRGRGANSAPDEVDGMVIFTSKQ 407

Query: 445 H-NIGDIIKVRITDVKISTLYGE 466
              +G  ++V+IT+     + GE
Sbjct: 408 PLALGSFVQVKITEALPHDVIGE 430


>gi|295695882|ref|YP_003589120.1| MiaB-like tRNA modifying enzyme [Bacillus tusciae DSM 2912]
 gi|295411484|gb|ADG05976.1| MiaB-like tRNA modifying enzyme [Bacillus tusciae DSM 2912]
          Length = 473

 Score =  207 bits (526), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 142/453 (31%), Positives = 234/453 (51%), Gaps = 26/453 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R    + GC++N YD+  +  +F + GY  V   D+AD+ V+NTC +      K      
Sbjct: 4   RVAFHTLGCKVNAYDTEAIRHLFRNAGYAEVPFEDEADVYVINTCSVTNVGDRKSRQ--- 60

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
               +    I+   +  +VV GC AQ    E+    P V++V+G     ++ E +E+ R 
Sbjct: 61  ----IIRRAIRRSPEATIVVTGCYAQVAPGEVAA-IPGVDLVMGNDRRGQIVEWVEKVRE 115

Query: 146 GKR---VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            +R   VV     V D FE L  V    +R R   A L IQ+GC+ FC+FC++P++RG  
Sbjct: 116 ERRPYQVVANVRRVRD-FEELD-VPAFADRAR---ATLKIQDGCNNFCSFCIIPFSRGFV 170

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS-EIKGLV 261
            SR    V+ +AR+L + G  EI L G +     G G D E  T +DLL  L  E++  V
Sbjct: 171 RSRKPENVLHQARRLAEAGYREIVLTGIHTG---GYGADLEGYTLADLLVDLERELEDSV 227

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R ++     + + ++        +  +LH+P+QSG D +L+ M RR+T  EY + I R
Sbjct: 228 RIRISSIEASQIDERMLDVLRRSKQICRHLHIPLQSGDDEVLRRMRRRYTVAEYAEKIHR 287

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           IR V P++A+++D IVGFPGET + F  T  L++++ ++Q   F YSPR GT  +     
Sbjct: 288 IREVLPEVAVTTDVIVGFPGETKEQFDNTRRLIEELKFSQLHVFPYSPRRGTAAARYPNP 347

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK----HGKEKGKLV--GRSPWL 435
           V   VK ER+  L +  ++  +++    VG+++ V++E        E G ++  G +   
Sbjct: 348 VPAEVKEERVRQLVRLSKDLTLAYASRFVGRVLPVVVESSVEDRRAEDGNMLFTGHADNY 407

Query: 436 QSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
             +V  +    +G +++VR+ D      +G +V
Sbjct: 408 LEMVFAADPSMVGQLVEVRLEDPGAERSFGSVV 440


>gi|325959667|ref|YP_004291133.1| RNA modification enzyme, MiaB family [Methanobacterium sp. AL-21]
 gi|325331099|gb|ADZ10161.1| RNA modification enzyme, MiaB family [Methanobacterium sp. AL-21]
          Length = 425

 Score =  207 bits (526), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 142/446 (31%), Positives = 228/446 (51%), Gaps = 28/446 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + ++ + GC  N  DS  M  +      E V++ +DAD I++NTC+++    +KV   L 
Sbjct: 2   KVYIDTVGCTFNQADSQIMAGILKENRVELVDTPEDADTIIMNTCYVKHPTEQKV---LT 58

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           +I+ ++    ++  +  ++++GC+ + + E++   +P  + + GP       E++     
Sbjct: 59  KIKKMQ----EQYPESKLLISGCMVEIDPEKLADAAPEASWI-GPHKIKSTYEIVNSVHE 113

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G  V +T +S E K     +      R   +   + I EGCD FCT+C   + RG   S 
Sbjct: 114 GNIVRETGFSSEPKVGLPKV------RTNPIIHIIQICEGCDGFCTYCCTRFARGRIQSY 167

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLR 264
           S   +  EA + +  G  EI L  Q+  A+   G D GE  + +DL+  +S+I G  +LR
Sbjct: 168 SSEMIKKEAEQAVTEGCKEIQLTAQDTAAY---GRDTGE--SLADLISMISDIDGKFKLR 222

Query: 265 YTTSHPRDMS---DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
               HP+ +    D +IKA         +LHLP+QSGSD +L  MNR HT  EY+ I+ R
Sbjct: 223 VGMMHPKSIMNQVDPIIKAFKKGKCY-KFLHLPIQSGSDTVLHDMNRCHTVDEYKTIVSR 281

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
            R   PDI+IS+D IVG+P ETDDDF+AT++L+ ++        KY  R GT  S+ LE+
Sbjct: 282 FREEIPDISISTDIIVGYPTETDDDFKATLNLIKELEPDFLHISKYMHRPGT-TSSQLEE 340

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           ++     ER   L     E  +  N   +G    +L+   G+ KG  VGRS   ++V++ 
Sbjct: 341 IEHETMKERSKALNDLKMEIAMKKNSMMIGSKQTILVTNKGR-KGGYVGRSDGYKTVIIE 399

Query: 442 SKNHNIGDIIKVRITDVKISTLYGEL 467
           +    IG  + V I D K + L  EL
Sbjct: 400 AA--EIGSFVDVVIKDAKPTYLLAEL 423


>gi|238065381|sp|Q2IM41|RIMO_ANADE RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
          Length = 470

 Score =  207 bits (526), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 141/454 (31%), Positives = 231/454 (50%), Gaps = 26/454 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R ++ + GC  N  DS  M       GY  V     A++IV+NTC   E A E+    + 
Sbjct: 4   RVYMHTLGCPKNRVDSEVMLGTLAEAGYRLVQDPAKAEVIVVNTCGFIESAKEESVEAIV 63

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            + + K    +EG    +VV GC+ Q   EE+ R  P V+  +G   Y  +  ++  A+ 
Sbjct: 64  ELADQK----REGRCRKLVVTGCLVQRHAEELARELPEVDHFLGTGAYQDVARIVSDAQA 119

Query: 146 GKRVV-DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            + VV D D+       R+       N     TA+L I EGCD  C FC++P  RG + S
Sbjct: 120 KRLVVPDPDFVHSAATPRV-------NSLPSHTAYLKIAEGCDNACAFCIIPKLRGGQRS 172

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R +  +V EA  L   G  E++L+ Q++ A+ G+ L G K     LL  L+++ GL  +R
Sbjct: 173 RPIDDLVAEAAALAAQGTVELSLVAQDLTAY-GQDLPG-KVRLHHLLPELAKVDGLRWIR 230

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
              ++PRD+ D L+ A  D   ++ YL +P+Q  SDR+L++M R   +   R ++ R+R+
Sbjct: 231 LHYAYPRDVPDALVAAMADEPKIVKYLDMPLQHSSDRLLRAMKRGRDSVFLRDLLARLRA 290

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             P +A+ +  IVG PGET+ DF   +  V++  + +   F+YSP  GTP + M +QV +
Sbjct: 291 RIPGLALRTALIVGLPGETEADFEDLLRFVEEQRFERLGVFEYSPEEGTPAAEMADQVPD 350

Query: 385 NVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-----KGKLVGRSPWLQ 436
            +K E   R++ +Q+ +     +   A +G+ +EVL+E   +E      G+   ++P + 
Sbjct: 351 ALKRERRDRIMAVQQGISR---AHQQAMIGRRLEVLVEGRAEETEHLLAGRHAQQAPEID 407

Query: 437 SVV-LNSKNHNIGDIIKVRITDVKISTLYGELVV 469
            +  +N      G+I+ V ITD     L G +V 
Sbjct: 408 GLTYVNDGVAYPGEIVTVEITDAAEYDLVGRVVA 441


>gi|86156522|ref|YP_463307.1| hypothetical protein Adeh_0093 [Anaeromyxobacter dehalogenans
           2CP-C]
 gi|85773033|gb|ABC79870.1| SSU ribosomal protein S12P methylthiotransferase [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 483

 Score =  206 bits (525), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 141/454 (31%), Positives = 231/454 (50%), Gaps = 26/454 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R ++ + GC  N  DS  M       GY  V     A++IV+NTC   E A E+    + 
Sbjct: 17  RVYMHTLGCPKNRVDSEVMLGTLAEAGYRLVQDPAKAEVIVVNTCGFIESAKEESVEAIV 76

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            + + K    +EG    +VV GC+ Q   EE+ R  P V+  +G   Y  +  ++  A+ 
Sbjct: 77  ELADQK----REGRCRKLVVTGCLVQRHAEELARELPEVDHFLGTGAYQDVARIVSDAQA 132

Query: 146 GKRVV-DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            + VV D D+       R+       N     TA+L I EGCD  C FC++P  RG + S
Sbjct: 133 KRLVVPDPDFVHSAATPRV-------NSLPSHTAYLKIAEGCDNACAFCIIPKLRGGQRS 185

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R +  +V EA  L   G  E++L+ Q++ A+ G+ L G K     LL  L+++ GL  +R
Sbjct: 186 RPIDDLVAEAAALAAQGTVELSLVAQDLTAY-GQDLPG-KVRLHHLLPELAKVDGLRWIR 243

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
              ++PRD+ D L+ A  D   ++ YL +P+Q  SDR+L++M R   +   R ++ R+R+
Sbjct: 244 LHYAYPRDVPDALVAAMADEPKIVKYLDMPLQHSSDRLLRAMKRGRDSVFLRDLLARLRA 303

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             P +A+ +  IVG PGET+ DF   +  V++  + +   F+YSP  GTP + M +QV +
Sbjct: 304 RIPGLALRTALIVGLPGETEADFEDLLRFVEEQRFERLGVFEYSPEEGTPAAEMADQVPD 363

Query: 385 NVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-----KGKLVGRSPWLQ 436
            +K E   R++ +Q+ +     +   A +G+ +EVL+E   +E      G+   ++P + 
Sbjct: 364 ALKRERRDRIMAVQQGISR---AHQQAMIGRRLEVLVEGRAEETEHLLAGRHAQQAPEID 420

Query: 437 SVV-LNSKNHNIGDIIKVRITDVKISTLYGELVV 469
            +  +N      G+I+ V ITD     L G +V 
Sbjct: 421 GLTYVNDGVAYPGEIVTVEITDAAEYDLVGRVVA 454


>gi|219854162|ref|YP_002471284.1| hypothetical protein CKR_0819 [Clostridium kluyveri NBRC 12016]
 gi|219567886|dbj|BAH05870.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 463

 Score =  206 bits (525), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 132/448 (29%), Positives = 247/448 (55%), Gaps = 19/448 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +R  + + GC++N Y++  M + F  + YE VN  + AD+ V+NTC +     +K    +
Sbjct: 26  KRVAMATLGCRVNQYETEAMAEKFIEKEYELVNFEEYADVYVINTCTVTNMGDKKSRQMI 85

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA- 143
            R +       ++    ++ V GC +Q   +E+ + +  V+VV+G +    +   + +A 
Sbjct: 86  HRAK-------RKNSSAVIAVVGCYSQIAPDEVSKING-VDVVLGTKNKGDILHFVNKAF 137

Query: 144 RFGKRVVDTDYSVEDK-FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           +  ++++   + +++K FE L+I +   NR R   AFL IQ+GC++FC++C++P+ RG  
Sbjct: 138 KDEEKIIKVSHVLKNKTFEDLNISEYQ-NRTR---AFLKIQDGCNRFCSYCLIPFARGPV 193

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            S+   +++ E +KL  N   EI L G ++ ++ G  + G       +L  + +IKG+ R
Sbjct: 194 CSKEPDKIIKEVKKLQVNNFKEIILSGIHIASY-GVDISGS-WNLIKILEEIDKIKGIDR 251

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R  +  P+  ++ +I     L  L P+ HL +QSG D  L  MNR++T  EY +I+ ++
Sbjct: 252 VRIGSIDPKFFTEDIINRMASLTKLCPHFHLSLQSGCDSTLNRMNRKYTTTEYEKIVYKL 311

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R    D++I++D IVGFPGET+++F  T D ++KI  ++   FKYS R GT  ++M EQ+
Sbjct: 312 RDSIKDVSITTDIIVGFPGETEEEFYKTYDFLNKIELSKIHVFKYSRREGTKAADMKEQI 371

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSP-WLQSVVL 440
           D  +K ER   + K     +  F +  +G  ++VL E K   +K    G +P +++ +  
Sbjct: 372 DGKIKDERSSKIIKLNERLENKFMNRFLGNNMDVLYEQKVSGDKIYYEGYTPNYIKVIAE 431

Query: 441 NSKNHNI-GDIIKVRITDVKISTLYGEL 467
           +++  N+ G ++  ++  VK   + G +
Sbjct: 432 SAEGENLEGKVLNTKLESVKEGYILGRI 459


>gi|210622624|ref|ZP_03293284.1| hypothetical protein CLOHIR_01232 [Clostridium hiranonis DSM 13275]
 gi|210154125|gb|EEA85131.1| hypothetical protein CLOHIR_01232 [Clostridium hiranonis DSM 13275]
          Length = 445

 Score =  206 bits (525), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 139/456 (30%), Positives = 238/456 (52%), Gaps = 31/456 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC-HIREKAAEKVYSFL 84
           +  ++S GC  N+ D+  M  +   +GYE V    +AD+I++NTC  IR+   E + + +
Sbjct: 3   KIALESLGCSKNLMDAEIMTGILKEKGYEFVEEFAEADIIIVNTCGFIRDAKQESIDTIV 62

Query: 85  GRIRNLKNSRIKEGGDL-LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
                 + S++KE G L  ++V GC+AQ   +E+L   P ++ +VG   +  + E+++R 
Sbjct: 63  ------ELSQLKEFGKLKYLIVTGCLAQRYADELLEEIPEIDAIVGTGNFMNISEIIDRL 116

Query: 144 RFGKRVVDT---DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
              K V +    +++ ++   R       Y       A+L I EGC   CT+C++P  RG
Sbjct: 117 ESEKNVTEIGNIEFAFDETLPR-------YVSTPEHMAYLKIGEGCSNHCTYCIIPKLRG 169

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
              SR +  +V+EA+ L   GV E+ ++ Q+   + G+ L GE    ++LL  L+ I+G+
Sbjct: 170 KYRSRKIEDIVEEAKTLAAEGVKELVVIAQDTTRY-GEDLYGE-AKLAELLEELAGIEGI 227

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
             +R   S+P  +++ LI      D +  Y  +P+Q  S+R+LK MNRR +  + R  ++
Sbjct: 228 KWIRIMYSYPESITEKLIDVIAAHDNICSYFDMPIQHASNRVLKRMNRRTSKEDIRNKVE 287

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
            IRS  PD  I +  IVGFPGET++D    ++ + +I + +  +F YS    TP   M  
Sbjct: 288 MIRSKIPDAVIRTTVIVGFPGETEEDLEELIEFMKEIKFDRLGAFAYSREEDTPADRMDG 347

Query: 381 QVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLI---EKHGKEKGKLVGRSPW 434
            +DE +K E   R++ +Q+ + E+    N     ++ EVLI    + G   G+  G +  
Sbjct: 348 HMDEEIKEERRDRVMMVQQAISEE---INQKREDKVFEVLIEEEAEEGVYVGRTQGDAEE 404

Query: 435 LQSVV-LNSKNH-NIGDIIKVRITDVKISTLYGELV 468
           + SVV +NS     IG  + V IT+     L G++V
Sbjct: 405 IDSVVYVNSDEELEIGSFVNVYITEAMEYDLIGDVV 440


>gi|218133712|ref|ZP_03462516.1| hypothetical protein BACPEC_01581 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991087|gb|EEC57093.1| hypothetical protein BACPEC_01581 [Bacteroides pectinophilus ATCC
           43243]
          Length = 447

 Score =  206 bits (524), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 140/447 (31%), Positives = 223/447 (49%), Gaps = 24/447 (5%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC-HIREKAAEKVYSFLGRIRN 89
           S GC  N+ D+  M     S+GYE  +  ++AD +V+NTC  I +   E V + L     
Sbjct: 7   SLGCDKNLVDTEMMLGQLHSRGYEFTDDENEADAVVVNTCCFIHDAKQESVDTLLEMAEL 66

Query: 90  LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR----LPELLERARF 145
            KN R +      ++  GC+AQ   +EI+   P V+ VVG   Y +    L EL+ +   
Sbjct: 67  KKNGRCR-----FLIACGCLAQRYRQEIIDEIPEVDAVVGTSAYDKIADTLDELVNKQGD 121

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G    +    +    +R  +  GGY        +L I EGCDK CT+C++P  RG   S 
Sbjct: 122 GINCFEDINRLPQTHDRRIVTTGGYYE------YLKIAEGCDKCCTYCIIPKVRGSYRSV 175

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            + +++ +A  L + GV E+ L+ Q  + + G  L GEK +   LL+ L+ I G+  +R 
Sbjct: 176 PMDELIKQAEDLAEQGVKELILVAQETSLY-GTDLYGEK-SLHRLLHELAAIDGIEWIRI 233

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
              +P ++ D LI+A      +  YL LP+Q  +D ILK M RR T  +   I+ ++RS 
Sbjct: 234 LYCYPEEIDDTLIQAIKSEPKVCHYLDLPIQHANDAILKRMGRRTTKQDLIDIVKKLRSE 293

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            PDI + +  I GFPGET +     +D +D++ + +  +F YS    TP +    Q+DE+
Sbjct: 294 IPDICLRTTLITGFPGETKEQHEEVLDFIDELEFDRLGAFTYSAEEDTPAAGFDNQIDED 353

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVLN 441
           VKA R   + +  +E     +   VG+ ++V+IE    ++   VGR+    P +   V  
Sbjct: 354 VKAARRDAVMELQQEISADRSAEVVGRTLKVMIEGKLADEDVYVGRTYRDAPNVDGYVFV 413

Query: 442 SKNHNI--GDIIKVRITDVKISTLYGE 466
           + +  +  GD I V+IT      L GE
Sbjct: 414 NTDAQLMSGDFIPVKITASDNYDLIGE 440


>gi|16331757|ref|NP_442485.1| hypothetical protein slr0082 [Synechocystis sp. PCC 6803]
 gi|2501537|sp|Q55803|RIMO_SYNY3 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|1001718|dbj|BAA10555.1| slr0082 [Synechocystis sp. PCC 6803]
          Length = 443

 Score =  206 bits (524), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 135/449 (30%), Positives = 222/449 (49%), Gaps = 35/449 (7%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           +   GC+ N  DS  M  +    GY+   + + AD +++NTC   + A ++    L  + 
Sbjct: 9   INHLGCEKNRIDSEHMLGLLVEAGYQVDANEELADYVIVNTCSFIQDARQESVRTLVELA 68

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
             K           +V++GC+AQ   E++L   P    VVG   Y  + +++ R   G+R
Sbjct: 69  EAKKK---------IVISGCLAQHFQEQLLEEIPEAVAVVGTGDYQNIVDIIRRTEQGQR 119

Query: 149 V----VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
           V     +  +  ++   R       Y       A+L + EGCD  C FC++P  RG + S
Sbjct: 120 VKAISPNPSFIADENLPR-------YRTTNEAIAYLRVAEGCDYRCAFCIIPQLRGKQRS 172

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK-GLVRL 263
           R +  +V EA +L   GV E+ L+ Q    + G  L GE    ++LL +L ++    +R+
Sbjct: 173 RPIESIVAEAEQLASQGVKELILISQITTNY-GLDLYGEP-KLAELLQALGKVDIPWIRI 230

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
            Y  ++P  ++  +I+A  D   ++PYL LP+Q     IL++MNR         II R++
Sbjct: 231 HY--AYPTGLTPKVIEAIRDTPNVLPYLDLPLQHSHPDILRAMNRPWQGQVNDDIITRLK 288

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           +  PD  + + FIVGFPGET++ F   +D V +  +     F +SP  GT   ++   V 
Sbjct: 289 TALPDAVLRTTFIVGFPGETEEHFGHLLDFVQRHQFDHVGVFTFSPEEGTAAFDLPNAVP 348

Query: 384 ENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQ 436
           E V   + +RL+ LQ+ +  Q+   N AC+GQ ++VLIE+     G+ +GRS    P + 
Sbjct: 349 EEVMGDRRDRLMALQQPISAQK---NAACLGQTLDVLIEQENPSTGEFIGRSTRFAPEVD 405

Query: 437 SVVLNSKNHNIGDIIKVRITDVKISTLYG 465
            +V    N N+ +I+ V IT      LYG
Sbjct: 406 GLVYVKGNANLNEIVPVVITATDDYDLYG 434


>gi|210612715|ref|ZP_03289430.1| hypothetical protein CLONEX_01632 [Clostridium nexile DSM 1787]
 gi|210151408|gb|EEA82416.1| hypothetical protein CLONEX_01632 [Clostridium nexile DSM 1787]
          Length = 298

 Score =  206 bits (524), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 115/279 (41%), Positives = 168/279 (60%), Gaps = 3/279 (1%)

Query: 190 CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSD 249
           C++C+VPY RG E SR+   ++ E   L+ +GV E+ LLGQNVN++ GK LD +  TF++
Sbjct: 21  CSYCIVPYVRGRERSRNPKDIIREIEALVADGVMEVMLLGQNVNSY-GKNLD-DPMTFAE 78

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
           LL  + +I+GL R+R+ TSHP+D+SD LI+       +  +LHLPVQSGS  ILK MNR 
Sbjct: 79  LLQEIEKIEGLERIRFMTSHPKDLSDELIEVMRHSKKICKHLHLPVQSGSTEILKKMNRH 138

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369
           +T  +Y +++ +I+   PDI++++D IVGFPGET++DF  TMD+V K+ Y  AF+F YS 
Sbjct: 139 YTKEQYLELVRKIKEAVPDISLTTDIIVGFPGETEEDFLETMDVVKKVRYDSAFTFIYSK 198

Query: 370 RLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV 429
           R GTP + M EQ+ ++V   R   L K+++E   +      G    VL+E        LV
Sbjct: 199 RTGTPAAIMEEQIPDDVVKGRFDRLLKEVQEISAAVCSVHEGTTQPVLVESMNDHDDSLV 258

Query: 430 -GRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
            GR      V        IG I+ V + + K     GE+
Sbjct: 259 TGRLSNNILVHFKGDESLIGKIVDVNLKECKGFYYLGEM 297


>gi|291525036|emb|CBK90623.1| MiaB-like tRNA modifying enzyme [Eubacterium rectale DSM 17629]
          Length = 434

 Score =  206 bits (524), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 130/395 (32%), Positives = 210/395 (53%), Gaps = 26/395 (6%)

Query: 33  GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92
           GC++N Y++  M+ +    GYE V     AD+ V+NTC +   A  K    L + +    
Sbjct: 10  GCKVNAYETEAMQHLLEEAGYEIVPFTQKADVYVINTCSVTNMADRKSRQMLHKAK---- 65

Query: 93  SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDT 152
              K   D +VV AGC  Q   +E+L     V++V+G    + L  LLE       V DT
Sbjct: 66  ---KNNPDSIVVAAGCYVQTSEKEVLNDLS-VDIVIGNDRKHDLVRLLEEYSLDS-VNDT 120

Query: 153 DYSVED---KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209
              + D    FE L I       K    AF+ +Q+GC++FC++C++PY RG   SR    
Sbjct: 121 VDDINDGKHDFEELFID----QTKEHTRAFIKVQDGCNQFCSYCIIPYARGRVRSRRFEN 176

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT-FSDLLYSLSEIKGLVRLRYTTS 268
           V+ E  +L  NG  E+ L G +++++   G+D E+ T   +L+ +++ +KG+ R+R  + 
Sbjct: 177 VIAEVERLAANGFKEVVLTGIHLSSY---GVDFEEATGLLELIQAVNAVKGIERIRLGSL 233

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
            P+ +++        LD + P+ HL +QSG D  LK MNR++T  EY +  + +R     
Sbjct: 234 EPKIVTEHFASELSKLDKICPHFHLSLQSGCDETLKRMNRKYTTKEYERGCELLRKYFVH 293

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
            AI++D IVGFPGET+++F  T   ++ I + +   FKYS R GT  + M +Q+DE +KA
Sbjct: 294 PAITTDVIVGFPGETEEEFEQTKAYLEHIHFYEMHIFKYSKRKGTRAAVMPDQIDEQIKA 353

Query: 389 ---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
              E+L+ L   + ++   F    +G+  EVL E+
Sbjct: 354 ARSEKLIALGHDMSKE---FRKFYIGKNEEVLFEE 385


>gi|310826527|ref|YP_003958884.1| 2-methylthioadenine synthetase [Eubacterium limosum KIST612]
 gi|308738261|gb|ADO35921.1| 2-methylthioadenine synthetase [Eubacterium limosum KIST612]
          Length = 435

 Score =  206 bits (524), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 129/430 (30%), Positives = 227/430 (52%), Gaps = 23/430 (5%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG--RIR 88
           + GC++N YD+  M ++F   GY  V   + AD+ V+NTC +         + LG  + R
Sbjct: 10  TLGCKVNSYDTEAMMEIFEKAGYRIVGFAEYADVYVVNTCTV---------THLGDRKSR 60

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
           N+     +   D ++V  GC  Q   +E+ +    V++++G +    +   +E  +  K 
Sbjct: 61  NMMRKARRTNPDAVIVAVGCYVQVAPDEV-QAIEEVDLIIGTKNRADIVADIEAYQKDKT 119

Query: 149 VVD--TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
             +  +D   E  +E L+I +     K    AFL +QEGC++FCT+C+VP+ RG   SR 
Sbjct: 120 QNNFVSDIMREHHYEDLNITE----TKGKTRAFLKVQEGCNQFCTYCIVPFARGPVRSRP 175

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRY 265
           +  V+ E +++  +G  E+ L G ++ ++   G+D G+      L+ ++ +++G+ R+R 
Sbjct: 176 VDAVLSEVKRVAAHGYAEVVLTGIHIASY---GVDLGDGVDLLSLIRAVDKVEGVKRIRL 232

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
            +  P  +++  ++   ++    P+ HL +QSG D +L  M R++T  +Y +I+ R+R  
Sbjct: 233 GSLEPLLLTEEFVQGLSEVRAFCPHFHLSLQSGCDTVLSRMGRKYTTAQYAEIVKRVRRA 292

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
               AI++D +VGFPGET+++F AT+  V++I + Q   FKYS R GT       QV E 
Sbjct: 293 FDYPAITTDIMVGFPGETEEEFEATLAFVEQIHFYQVHVFKYSRRKGTKADAFQGQVPEE 352

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445
           +K ER   L ++ R  +  F  A  G+ + VL E+  KE+G   G +     VVL +   
Sbjct: 353 IKTERSHRLTQRARACEQDFLKANAGRTVPVLYER-AKEEGVYEGHTDNYIPVVLKTIEK 411

Query: 446 NIGDIIKVRI 455
             G II+  +
Sbjct: 412 MNGKIIETEL 421


>gi|153854410|ref|ZP_01995688.1| hypothetical protein DORLON_01683 [Dorea longicatena DSM 13814]
 gi|149752936|gb|EDM62867.1| hypothetical protein DORLON_01683 [Dorea longicatena DSM 13814]
          Length = 442

 Score =  206 bits (523), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 130/453 (28%), Positives = 237/453 (52%), Gaps = 38/453 (8%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++  + + GC++N Y++  M+++    GYE V   + AD+ ++NTC +   A  K    L
Sbjct: 2   KKVALHNLGCKVNAYETEAMQELLEKHGYEIVPFQEGADVYIINTCTVTNMADRKSRQML 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE--- 141
            + R +         D +VV  GC  QA+ ++I      +++VVG      + E+LE   
Sbjct: 62  HKARKM-------NPDSIVVACGCYVQAKKDDI---PEGIDIVVGNNKKQNIVEILENYE 111

Query: 142 --RARFGKRVVDT-------------DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGC 186
             + + G+R                 D + E  +E L +     + +    A++ +Q+GC
Sbjct: 112 KEKNQDGQRETSDEQEKETETYQEILDINHEKVYEDLHLSTAAEHTR----AYIKVQDGC 167

Query: 187 DKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT 246
           ++FC++C++P+ RG   SRS   V+DE + L  NG  E+ L G +++++   G+D +   
Sbjct: 168 NQFCSYCIIPFARGRVRSRSRDSVLDEVKTLSANGYKEVVLTGIHLSSY---GIDCDDNL 224

Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306
            S L+ ++ E++G+ R+R  +  PR +++   +    L  + P+ HL +QSG +  LK M
Sbjct: 225 LS-LILAIHEVEGIERIRLGSLEPRIITEEFAQTIAKLPKMCPHFHLSLQSGCNATLKRM 283

Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
           NRR+TA EY +    +R    + A+++D IVGFPGET+++F  +   VDK+ + +   FK
Sbjct: 284 NRRYTAEEYYEKCQLLRKYFDNPALTTDVIVGFPGETEEEFAESKAFVDKVDFYETHIFK 343

Query: 367 YSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG 426
           YS R GT  + M +QV + +KA R   L +  R++Q  + +  +G   EVLIE+     G
Sbjct: 344 YSRREGTKAAAMKDQVPDQIKAARSAELLELNRKKQAVYEERLLGTTQEVLIEEKIVRDG 403

Query: 427 K--LVGRSPWLQSVVLNSKNHNIGDIIKVRITD 457
           +   +G +     + + + N+ I  ++ V I +
Sbjct: 404 EELQIGHTKEYVKIGVKNPNNLINQLVNVEIEN 436


>gi|328949917|ref|YP_004367252.1| Ribosomal protein S12 methylthiotransferase rimO [Marinithermus
           hydrothermalis DSM 14884]
 gi|328450241|gb|AEB11142.1| Ribosomal protein S12 methylthiotransferase rimO [Marinithermus
           hydrothermalis DSM 14884]
          Length = 451

 Score =  206 bits (523), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 145/460 (31%), Positives = 231/460 (50%), Gaps = 38/460 (8%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           +P +    S GC   + DS ++     ++GYE   + ++ADL+V+NTC     A E+   
Sbjct: 1   MPGKIGFVSLGCPKALVDSEQILTRLRAEGYEVAPTYEEADLVVVNTCGFITPAVEESLD 60

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +G         ++E G   VVV GC+  A  E I  R P V  V GP    R+ E + R
Sbjct: 61  AIGEA-------LRENGK--VVVTGCLG-ARPEVIQARHPEVLEVTGPGEVDRVLEAVHR 110

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
                 V+  D   E+ F   ++V  G        A+L I EGC+  C+FC++P  RG +
Sbjct: 111 ------VLPPD---ENPF--TALVPRGVKLTPRHYAYLKIAEGCNHRCSFCIIPKLRGRQ 159

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYSL 254
            SR   +V+ EA +L+  G  E+ ++ Q+ +A+      R     G   +   +DL+  L
Sbjct: 160 RSRDAGEVLYEAYRLVSTGTKELLVIAQDTSAYGVDLQHRTSEFQGRAVRAHLTDLVTEL 219

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
           +E+   VRL Y   +P       + A G L   +PYL +P+Q  S RIL++M R      
Sbjct: 220 AEMGAWVRLHYVYPYPHVADLVALMAEGKL---LPYLDVPLQHASPRILRAMRRPGGPEA 276

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
           + + I   R V P++ I S FIVGFPGET+ +F   ++ + +    +  +F YS   G  
Sbjct: 277 HLETIRAWREVCPELTIRSTFIVGFPGETEAEFELLLEFLAEARLDRVGAFTYSEVEGAE 336

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS-- 432
            + +  +V E VKAERL  L     E  +  N   +GQ++EV+++++G+E G+++GR+  
Sbjct: 337 ANALPGRVPEEVKAERLERLMALQAEISLEKNRKKIGQVLEVIVDEYGEEPGQVIGRTKG 396

Query: 433 --PWLQSVV--LNSKNHNIGDIIKVRITDVKISTLYGELV 468
             P +   V  +      IGDII+V++TD     LYG+ V
Sbjct: 397 DAPGIDGRVYAMTDGTVKIGDIIRVKVTDASTYDLYGDAV 436


>gi|302037249|ref|YP_003797571.1| putative tRNA modifying enzyme, MiaB-like [Candidatus Nitrospira
           defluvii]
 gi|300605313|emb|CBK41646.1| putative tRNA modifying enzyme, MiaB-like [Candidatus Nitrospira
           defluvii]
          Length = 447

 Score =  206 bits (523), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 127/444 (28%), Positives = 218/444 (49%), Gaps = 14/444 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R  + + GC+++  ++  + D    +GY+ V    + DL+VLNTC + E A +       
Sbjct: 7   RASLHTLGCRLSQSETSMLADTLARRGYQLVEFGKETDLLVLNTCSVTENAEKDC----- 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
             R      ++      V V GC AQ  G   L++ P ++++VG Q    LP+ L     
Sbjct: 62  --RYAVRKTLRHSPHAFVAVTGCYAQT-GATQLQKVPGIDLIVGTQFKMNLPDYLPAPAK 118

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            ++  + +       +R   V  G        A L IQ+GCD  C+FC++P+ RG E SR
Sbjct: 119 LRKQPEPELRHSRTIDREDFVLPGTAYSDSTRALLKIQDGCDFMCSFCLIPFARGRERSR 178

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           +   V+ EAR+L  +G  E+ L G N+  +  +GL        +LL  L  +  + R+R 
Sbjct: 179 TAEDVLREARELAAHGYRELVLTGVNIGRYSYQGLG-----LVELLRELESVPDVTRIRI 233

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
           ++  P  +   L++       L  YLHLP+QSG + IL++MNRR+   EY +++++  ++
Sbjct: 234 SSIEPTTVPAALLEHMAGSTKLCHYLHLPLQSGDNTILQAMNRRYAVREYEELVEQALAL 293

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            PD+ + +D +VGFPGE +  F  T+  V+++ ++    F YS R GT  + + +Q+   
Sbjct: 294 MPDLGLGTDLMVGFPGEDEQAFANTVMTVERLPFSYFHVFSYSSRPGTAAARLEDQISPA 353

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445
           V  +R   L +  R + ++F    +G  + VL E+ G+  G   G +     V + +   
Sbjct: 354 VIRQRSKALSELSRTKALAFYQQQIGHTLPVLFEQ-GERDGFRTGTTANFTRVAVAADAV 412

Query: 446 NIGDIIKVRITDVKISTLYGELVV 469
             G I +V IT +     YG  V 
Sbjct: 413 EAGSIHQVTITGIMDGLAYGRPVA 436


>gi|42525164|ref|NP_970544.1| hypothetical protein Bd3841 [Bdellovibrio bacteriovorus HD100]
 gi|81615876|sp|Q6MGT1|RIMO_BDEBA RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|39577375|emb|CAE81198.1| conserved hypothetical protein [Bdellovibrio bacteriovorus HD100]
          Length = 457

 Score =  206 bits (523), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 142/459 (30%), Positives = 234/459 (50%), Gaps = 38/459 (8%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ DS  M       GYE V   D AD +++NTC   E + ++    +  + +L
Sbjct: 15  SLGCPKNLVDSEIMAGTLMKDGYEVVGEADQADTVIVNTCGFIEDSKKESIQRILDMSDL 74

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
           K    +EG    VVVAGC+ Q   ++++   P  ++ VG   +  + ++L+ +  G++  
Sbjct: 75  K----QEGKIKKVVVAGCLTQRYKDDLVEGLPEADLFVGSGEFQNIAKILKNSDEGEKQK 130

Query: 151 D----TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
                  Y  E+   R+       N + G  A+L I EGC K C FC +P  RG   SRS
Sbjct: 131 TFFNLPTYLQEEATPRV-------NSQPGHRAYLKISEGCMKRCAFCAIPLIRGNLQSRS 183

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD------GEKCTFSDLLYSLSEIKGL 260
           +  +V EA+ L+  GV E+ ++  +   +   G D        K +  +LL +L +++GL
Sbjct: 184 IDAIVAEAKLLVAGGVKELIIISHDFTDY---GFDIRRKDPTRKESPVELLKALDQVEGL 240

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
             +R    +P  ++  +++   +   ++ Y  +P+Q  +D++LKSMNR+ T  E    + 
Sbjct: 241 QWIRLMYLYPDGITQEMVQVIKNSTKIVKYFDMPLQHVNDQVLKSMNRKMTRDEIETALM 300

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
            IR   P+  I + FIVGFPGET + F   ++ V +  + +   FKYSP   TPG  M  
Sbjct: 301 NIREHLPEAVIRTQFIVGFPGETQEQFEELLNFVAEQQFDRVGCFKYSPEENTPGGRMEN 360

Query: 381 QVDENVKAER---LLCLQKKL-REQQVSFNDACVGQIIEVLIEKHGKE-----KGKLVGR 431
           Q+DE  K  R   L+ +Q+ + RE+   F    VG+ ++V++E   +E     +G+  G+
Sbjct: 361 QIDEETKQYRHDALMEVQQNISREKHSDF----VGKTLQVIVEGFSEETDLLLQGRFWGQ 416

Query: 432 SPWLQSVVL-NSKNHNIGDIIKVRITDVKISTLYGELVV 469
           +P +  VVL N     +GD++KV ITD     L GE+VV
Sbjct: 417 APDIDGVVLINDGQAQVGDMVKVHITDNMEYDLIGEIVV 455


>gi|292670946|ref|ZP_06604372.1| MiaB family RNA modification enzyme [Selenomonas noxia ATCC 43541]
 gi|292647567|gb|EFF65539.1| MiaB family RNA modification enzyme [Selenomonas noxia ATCC 43541]
          Length = 442

 Score =  206 bits (523), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 146/440 (33%), Positives = 228/440 (51%), Gaps = 33/440 (7%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEK-VYSFLGRIRN 89
           S GC  N+ D+  M  +    G +  N   +AD++++NTC   E A E+ + + LG    
Sbjct: 7   SLGCAKNLVDTEVMLGIMREHGIDITNEPAEADILIVNTCAFIESAKEESITTVLGMADY 66

Query: 90  LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149
            ++ R +      ++VAGC+ Q  G+++L   P  N ++G   + R+ E++E    G+R+
Sbjct: 67  KESGRCRS-----LIVAGCLGQRYGQQLLDEIPEANAIIGTGAWSRIMEVIEETLKGRRL 121

Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGV---TAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           +    S +D     +I D    R R     TA++ I EGCD  C FC +P  RG   SR 
Sbjct: 122 L---ISGKDD----TIYDAKTPRLRTTPNYTAYVKIAEGCDHRCAFCAIPLIRGSFRSRV 174

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRY 265
           +  VV EA  L   GV E+ L+ Q+   +   GLD  EK     LL +L++IK +  +R 
Sbjct: 175 MEDVVAEAEHLAAQGVRELVLIAQDSANY---GLDLYEKPMLPALLRALTKIKDIAWIRV 231

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
             S+P+  SD LI+       ++ Y+ LP+Q   D +L+SMNR  T     ++I R+R  
Sbjct: 232 LYSYPKYFSDELIEVFATEPKVVKYVDLPLQHAHDAVLRSMNRPDTREGVEKLIKRLRER 291

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P +AI S FIVGFPGETD  ++A    V+   + +   F YS    TP + M ++V E 
Sbjct: 292 IPGVAIRSTFIVGFPGETDTHYQALRSFVEAQRFDKVGIFTYSEEEDTPAAKMAQKVPEE 351

Query: 386 VKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRS----PWL-- 435
           V  ER   L+ LQ K+ E+    N +  G+ ++VLIE   +E+ G  +GRS    P +  
Sbjct: 352 VMQERYHDLMSLQSKISEE---INVSLEGKEVDVLIEGRDEEQEGISIGRSYREAPEVDG 408

Query: 436 QSVVLNSKNHNIGDIIKVRI 455
           Q  + +     +GDI +VR+
Sbjct: 409 QIYIESDTESRVGDIARVRL 428


>gi|81301321|ref|YP_401529.1| hypothetical protein Synpcc7942_2512 [Synechococcus elongatus PCC
           7942]
 gi|81323650|sp|Q935Y2|RIMO_SYNE7 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|15620542|gb|AAL03926.1|U30252_14 unknown [Synechococcus elongatus PCC 7942]
 gi|81170202|gb|ABB58542.1| Protein of unknown function UPF0004 [Synechococcus elongatus PCC
           7942]
          Length = 452

 Score =  206 bits (523), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 142/448 (31%), Positives = 231/448 (51%), Gaps = 35/448 (7%)

Query: 33  GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92
           GC+ N  D+  M  +    GY    +   AD++V+NTC   + A E+       +R L  
Sbjct: 13  GCEKNRIDTEHMIGLLAEAGYGIDANEALADVVVVNTCSFIQAAREE------SVRTL-- 64

Query: 93  SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDT 152
             + E G   +V+AGC+AQ   +++L   P    +VG   Y+R+ ++L+R   G+RV   
Sbjct: 65  VELAESGKK-IVIAGCLAQHFQDQLLAELPEAIALVGTGDYHRIVDVLQRTESGERV--N 121

Query: 153 DYSVEDKFERLSIVDGGYNRKRGVT---AFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209
             S E  F    I D    R R  T   A+L + EGCD  C FC++P+ RG + SRS+  
Sbjct: 122 AISQEPSF----IADENLPRYRTTTSAVAYLRVAEGCDYRCAFCIIPHLRGKQRSRSIES 177

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE-KCTFSDLLYSLSEIK-GLVRLRYTT 267
           +V EA++L   GV E+ L+ Q    +   GLD   K   ++LL  L ++    +R+ Y  
Sbjct: 178 IVAEAKQLAAEGVQELVLISQITTNY---GLDRYGKPMLAELLRQLGQVDVPWIRIHY-- 232

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
           ++P  ++  +I A  +   ++PYL LP+Q     ILK+MNR        +II++++   P
Sbjct: 233 AYPTGLTPEVIAAIRETHNVLPYLDLPLQHSHPEILKAMNRPWQGNVNDRIIEKLKEALP 292

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
           D  + + FI GFPGET++ FR     + +  +     F +SP  GT   ++   V ++VK
Sbjct: 293 DAVLRTTFIAGFPGETEEHFRHLQQFIQRHEFDHVGVFAFSPEEGTAAIDLPNPVPDDVK 352

Query: 388 AER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVL 440
             R   L+  Q+ + E++   N A +G++++VLIE+     G  +GRS    P +  VV 
Sbjct: 353 EARRDALMATQQPIAERR---NRAQIGRLVDVLIEQEHPSTGLKIGRSARFAPEVDGVVY 409

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
              +  +G ++ VRITD  I  L+GE+ 
Sbjct: 410 VQGDAALGQLVTVRITDADIYDLHGEVA 437


>gi|304440349|ref|ZP_07400238.1| MiaB family RNA modification enzyme [Peptoniphilus duerdenii ATCC
           BAA-1640]
 gi|304371101|gb|EFM24718.1| MiaB family RNA modification enzyme [Peptoniphilus duerdenii ATCC
           BAA-1640]
          Length = 444

 Score =  205 bits (522), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 134/456 (29%), Positives = 240/456 (52%), Gaps = 40/456 (8%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           +F+ + GC  N  D+  M  +   +  E  N++DDAD+I++NTC   E A E+       
Sbjct: 5   YFI-TLGCSKNDVDTDLMNTILDEKKSEATNNVDDADVIIVNTCGFIESAKEESIDMTLE 63

Query: 87  IRNLK-NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           + + K N ++K      +++AGC+A+    E+++  P ++ ++G     ++ E+++ +  
Sbjct: 64  VASYKENKKLKS-----LILAGCLAERYSNELMKEIPEIDGIIGTGHLNKINEVIDLSLE 118

Query: 146 GKRVV-----DTDYSVEDKFERLSIVDGGYNRKR--GVTAFLTIQEGCDKFCTFCVVPYT 198
           GK+ V     +++Y           ++G    K+   +T ++ I EGCD FCT+C++P  
Sbjct: 119 GKKPVFIGDINSEY-----------LEGNLKSKQDINITEYVKISEGCDNFCTYCIIPKL 167

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258
           +G   SR L  +V E + L++NG  E+ L+ QN   + G  L GE    + LL+ L +I+
Sbjct: 168 KGKNRSRKLENIVGEVKYLVENGTREVILIAQNTTDY-GIDLYGE-YRLAKLLHELEKIE 225

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
            L  +R    +P   +  LI    +   L+ Y  +P+Q  SD +LK MNRR    + + +
Sbjct: 226 DLKWIRVMYLYPDHFTKELIDEFKNNKKLVKYADIPLQHVSDNVLKRMNRRTNKEDIKNL 285

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           I  +RS   D+ I + FIVGFPGET++DF   ++ ++     +  +F YS   GTP +N+
Sbjct: 286 IKTLRSEIDDMVIRTTFIVGFPGETEEDFMELLEFINFAKLDRVGAFTYSKEEGTPAANL 345

Query: 379 LEQVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPW- 434
             Q+ E++K    ER++  Q  + E+ +   ++ VG+++EVLIE+   +K   +GRS + 
Sbjct: 346 EGQISEDIKQDRFERIMMEQMGISEELL---NSKVGKVLEVLIEEKADDK-TYIGRSEYD 401

Query: 435 -----LQSVVLNSKNHNIGDIIKVRITDVKISTLYG 465
                 + +  + +   IG  +KV I D +   L G
Sbjct: 402 APEIDTEVIFTSDRELEIGSFVKVFIEDSQEYELLG 437


>gi|186684627|ref|YP_001867823.1| MiaB-like tRNA modifying enzyme YliG [Nostoc punctiforme PCC 73102]
 gi|238066420|sp|B2IVR7|RIMO_NOSP7 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|186467079|gb|ACC82880.1| MiaB-like tRNA modifying enzyme YliG [Nostoc punctiforme PCC 73102]
          Length = 439

 Score =  205 bits (522), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 141/452 (31%), Positives = 227/452 (50%), Gaps = 35/452 (7%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           +   GC+ N  D+  M  M    GY    + + AD +++NTC   E A ++    L  + 
Sbjct: 9   ISHLGCEKNRIDTEHMLGMLVEAGYGVDTNEELADYVIVNTCSFIEAARQESVRTLVELA 68

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
              N +I        V+ GC+AQ   E++L   P    VVG   Y+++  ++ER   G+R
Sbjct: 69  E-ANKKI--------VITGCMAQHFQEQLLEELPEAVAVVGTGDYHKIVNVIERVELGER 119

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVT---AFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           V     S+E  +    I D    R R  T   A+L + EGCD  C FC++P+ RG + SR
Sbjct: 120 V--KQVSIEPTY----IADETTPRYRTTTEGVAYLRVAEGCDYRCAFCIIPHLRGNQRSR 173

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIK-GLVRL 263
           ++  +V EA +L+  GV EI L+ Q    +   GLD   K   ++LL +L ++    +R+
Sbjct: 174 TIESIVAEAEQLVSQGVKEIILISQITTNY---GLDIYGKPKLAELLRALGKVDIPWIRM 230

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
            Y  ++P  ++   I A  +   ++PYL LP+Q     IL++MNR         IIDRI+
Sbjct: 231 HY--AYPTGLTPDAIAAIQETPNVLPYLDLPLQHSHPDILRAMNRPWQGRVNDGIIDRIK 288

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           +  P   + + FIVGFPGET + F   ++ V +  +     F +S   GTP   +  Q+ 
Sbjct: 289 TALPTAVLRTTFIVGFPGETQEHFEHLLEFVQRHEFDHVGVFTFSSEEGTPAYKLPNQLA 348

Query: 384 ENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQ 436
           + V  +R   L+ LQ+ + +++   N   VG+I++VLIE+   E G+L+GR    SP + 
Sbjct: 349 QEVMDDRRYQLMELQQPISQKK---NQQEVGKIVDVLIEQENPESGELIGRSGRFSPEVD 405

Query: 437 SVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            +V       +G I+ V I       LYG++V
Sbjct: 406 GLVYVKGQAKLGTIVPVAIHHADTYDLYGQVV 437


>gi|297617812|ref|YP_003702971.1| MiaB-like tRNA modifying enzyme [Syntrophothermus lipocalidus DSM
           12680]
 gi|297145649|gb|ADI02406.1| MiaB-like tRNA modifying enzyme [Syntrophothermus lipocalidus DSM
           12680]
          Length = 444

 Score =  205 bits (522), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 133/401 (33%), Positives = 217/401 (54%), Gaps = 18/401 (4%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           +  R  V + GC++N  +S  ++  F   GY+ ++  + AD+ V+NTC +   +  K  +
Sbjct: 3   IKARVTVYTLGCKVNQVESENIKQQFSDYGYQILSGDEVADVYVVNTCAVTHVSERKSRA 62

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE- 141
            L R +  KN +       +VV  GC+AQ     +L   P V++V+G  +  R+ EL++ 
Sbjct: 63  MLRRAKR-KNPKA------VVVATGCLAQV-APNLLAAMPEVDLVIGNSSKDRIAELVQN 114

Query: 142 -RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
            R +  K VV  + S E    R +     Y R R   AF+ IQ+GC+ +C++C+VPY RG
Sbjct: 115 HRGQSSKAVVVGELSKE-PLRRGAWCLPAYERTR---AFVKIQDGCESYCSYCLVPYARG 170

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS-LSEIKG 259
              S+    VV E   L+  G  EI + G +   +   G D        LL + L +++G
Sbjct: 171 PVRSKLPEDVVREIDWLVSAGFKEIVITGIHTGMY---GKDLADWDLVRLLETVLVKVQG 227

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
             RLR ++  P +++  LI+       L  +LH+P+QSGSDR+LK MNRR+T   YR ++
Sbjct: 228 DYRLRLSSIEPTEITKKLIELMASEKKLCRHLHIPLQSGSDRVLKLMNRRYTRGFYRDLV 287

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
             +    P  A++SD +VGFP E+++DF  T+ L+D++ +A    F YSPR  T  +++ 
Sbjct: 288 MMVTGRVPGTAVTSDVMVGFPTESEEDFLDTLKLIDELPFAGLHVFPYSPRPNTAATDLY 347

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
            +V+  VK +R   L K  R +Q  F ++C GQ + VL+E+
Sbjct: 348 PRVENQVKEQRSKALLKLARHKQQRFIESCSGQTLTVLVEE 388


>gi|225570522|ref|ZP_03779547.1| hypothetical protein CLOHYLEM_06624 [Clostridium hylemonae DSM
           15053]
 gi|225160719|gb|EEG73338.1| hypothetical protein CLOHYLEM_06624 [Clostridium hylemonae DSM
           15053]
          Length = 441

 Score =  205 bits (522), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 144/450 (32%), Positives = 228/450 (50%), Gaps = 28/450 (6%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC-HIREKAAEKVYSFLGRIRN 89
           S GC  N+ DS  M  +   +GY+ V+   +AD+IV+NTC  I +   E + + L     
Sbjct: 7   SLGCDKNLVDSEVMLGLLDREGYQIVDDEAEADIIVVNTCCFIHDAKEESIQTILEMAEY 66

Query: 90  LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149
            +  R+K      ++V GC+AQ   +EI+   P V+ V+G  +Y ++ E ++ A  G   
Sbjct: 67  KQTGRLK-----ALIVTGCLAQRYQKEIVEEIPEVDAVLGTSSYDKIAEAVKEALEGHPC 121

Query: 150 VDT-DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           ++  D  V    E   +V  G     G  A+L I EGCDK CT+C++P  RG   S  + 
Sbjct: 122 MEMEDIDVLPLVESKRLVTTG-----GHYAYLKIAEGCDKHCTYCIIPKIRGNFRSVPME 176

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
           ++V EA  L + GV E+ L+ Q    + GK + GEK +   LL  L  I+GL  +R    
Sbjct: 177 RLVKEAEALAEQGVKELILVAQETTLY-GKDIYGEK-SLHRLLRKLCGIEGLRWIRILYC 234

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
           +P ++ D LI+   +   +  YL LP+Q  +D ILK M RR    +  +I+ ++R   PD
Sbjct: 235 YPEEIYDELIQVIKEEKKICHYLDLPIQHANDDILKRMGRRTDKKQLIEIVGKLRKEIPD 294

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           I + +  I GFPGET       M+ VD++ + +   F YSP   TP ++M +Q+ E +K+
Sbjct: 295 ITLRTTLITGFPGETIKQHEELMEFVDEMAFERLGVFTYSPEEDTPAASMPDQIPEEIKS 354

Query: 389 ERLLCLQKKLRE--QQVSFNDA--CVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVL 440
           +R    Q +L E  Q + F  A   VGQ + V+IE    ++   VGR+    P +  ++ 
Sbjct: 355 DR----QAELMELQQDIVFEQAESMVGQKVLVMIEGRVADENAYVGRTYRDAPGVDGLIF 410

Query: 441 NSKNHNI--GDIIKVRITDVKISTLYGELV 468
            +    +  GD     +T      L GEL+
Sbjct: 411 INTEEELMSGDFAMAEVTGASEYDLIGELI 440


>gi|197120521|ref|YP_002132472.1| MiaB-like tRNA modifying enzyme YliG [Anaeromyxobacter sp. K]
 gi|238065287|sp|B4UKQ2|RIMO_ANASK RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|196170370|gb|ACG71343.1| MiaB-like tRNA modifying enzyme YliG [Anaeromyxobacter sp. K]
          Length = 469

 Score =  205 bits (522), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 141/454 (31%), Positives = 230/454 (50%), Gaps = 26/454 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R ++ + GC  N  DS  M       GY  V     A++IV+NTC   E A E+    + 
Sbjct: 4   RVYMHTLGCPKNRVDSEVMLGTLAEAGYRLVQDPAQAEVIVVNTCGFIESAKEESVEAIV 63

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            + + K    +EG    +VV GC+ Q   EE+ R  P V+  +G   Y  +  ++  A+ 
Sbjct: 64  ELADQK----REGRCRKLVVTGCLVQRHAEELARELPEVDHFLGTGAYQDVARIVSDAQA 119

Query: 146 GKRVV-DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            + VV D D+       R+       N     TA+L I EGCD  C FC++P  RG + S
Sbjct: 120 KRLVVPDPDFVHSSATPRV-------NSLPSHTAYLKIAEGCDNACAFCIIPKLRGGQRS 172

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R +  +V EA  L   G  E++L+ Q++ A+ G+ L G K     LL  L+++ G+  +R
Sbjct: 173 RPIDDLVAEAAALAAQGTVELSLVAQDLTAY-GQDLPG-KVRLHHLLPELAKVDGIRWIR 230

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
              ++PRD+ D L+ A  D   ++ YL +P+Q  SDR+L++M R   +   R ++ R+RS
Sbjct: 231 LHYAYPRDVPDALVAAIADEPRIVKYLDMPLQHSSDRLLRAMKRGRDSVFLRDLLARLRS 290

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             P +A+ +  IVG PGET+ DF   +  V++  + +   F+YS   GTP + M +QV +
Sbjct: 291 RIPGLALRTALIVGLPGETEADFEDLLRFVEEQRFERLGVFEYSAEEGTPAAEMADQVPD 350

Query: 385 NVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-----KGKLVGRSPWLQ 436
            VK E   R++ +Q+ +     +   A +G+ +EVL+E   +E      G+   ++P + 
Sbjct: 351 AVKRERRDRIMAVQQAISR---AHQQAMIGRRVEVLVEGRAEETEHLLAGRHAQQAPEID 407

Query: 437 SVV-LNSKNHNIGDIIKVRITDVKISTLYGELVV 469
            +  +N      G+I+ V ITD     L G +V 
Sbjct: 408 GLTYINDGVAYPGEIVTVEITDAAEYDLVGRVVA 441


>gi|153953540|ref|YP_001394305.1| oxidoreductase [Clostridium kluyveri DSM 555]
 gi|146346421|gb|EDK32957.1| Predicted oxidoreductase [Clostridium kluyveri DSM 555]
          Length = 434

 Score =  205 bits (522), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 134/440 (30%), Positives = 244/440 (55%), Gaps = 19/440 (4%)

Query: 33  GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92
           GC++N Y++  M + F  + YE VN  + AD+ V+NTC +     +K    + R +  KN
Sbjct: 5   GCRVNQYETEAMAEKFIEKEYELVNFEEYADVYVINTCTVTNMGDKKSRQMIHRAKR-KN 63

Query: 93  SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA-RFGKRVVD 151
           S        ++ V GC +Q   +E+ + +  V+VV+G +    +   + +A +  ++++ 
Sbjct: 64  S------SAVIAVVGCYSQIAPDEVSKING-VDVVLGTKNKGDILHFVNKAFKDEEKIIK 116

Query: 152 TDYSVEDK-FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
             + +++K FE L+I +   NR R   AFL IQ+GC++FC++C++P+ RG   S+   ++
Sbjct: 117 VSHVLKNKTFEDLNISEYQ-NRTR---AFLKIQDGCNRFCSYCLIPFARGPVCSKEPDKI 172

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270
           + E +KL  N   EI L G ++ ++ G  + G       +L  + +IKG+ R+R  +  P
Sbjct: 173 IKEVKKLQVNNFKEIILSGIHIASY-GVDISGS-WNLIKILEEIDKIKGIDRVRIGSIDP 230

Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330
           +  ++ +I     L  L P+ HL +QSG D  L  MNR++T  EY +I+ ++R    D++
Sbjct: 231 KFFTEDIINRMASLTKLCPHFHLSLQSGCDSTLNRMNRKYTTTEYEKIVYKLRDSIKDVS 290

Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER 390
           I++D IVGFPGET+++F  T D ++KI  ++   FKYS R GT  ++M EQ+D  +K ER
Sbjct: 291 ITTDIIVGFPGETEEEFYKTYDFLNKIELSKIHVFKYSRREGTKAADMKEQIDGKIKDER 350

Query: 391 LLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSP-WLQSVVLNSKNHNI- 447
              + K     +  F +  +G  ++VL E K   +K    G +P +++ +  +++  N+ 
Sbjct: 351 SSKIIKLNERLENKFMNRFLGNNMDVLYEQKVSGDKIYYEGYTPNYIKVIAESAEGENLE 410

Query: 448 GDIIKVRITDVKISTLYGEL 467
           G ++  ++  VK   + G +
Sbjct: 411 GKVLNTKLESVKEGYILGRI 430


>gi|4104517|gb|AAD02057.1| unknown [Clostridium acetobutylicum DSM 1731]
          Length = 386

 Score =  205 bits (521), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 128/395 (32%), Positives = 216/395 (54%), Gaps = 22/395 (5%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y+S  M + F   G+E V++ + AD  V+NTC +      K    + R R  
Sbjct: 7   TLGCRVNSYESEAMAEKFIKSGWEIVDNDEKADAYVINTCTVTNMGDRKSRQMISRAR-- 64

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT-----YYRLPELLERARF 145
                K   D ++   GC +Q E E++      V++V+G +      +Y    + ER + 
Sbjct: 65  -----KANKDAVIAAVGCYSQVEPEKVAEIEG-VDIVLGTKNKGDIIHYVNKFIEERNQI 118

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
              V   D   + KFE L+I D   ++ R   AFL IQ+GC++FC++C++PY RG   S+
Sbjct: 119 ---VNVKDVFTDKKFEDLNI-DEYQDKTR---AFLKIQDGCNRFCSYCLIPYARGGVCSK 171

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           +  +V+ E ++L ++G  EI L G ++ ++ G  L G+    S ++    +I G+ R+R 
Sbjct: 172 NPEKVIGEIKRLAEHGFKEIILSGIHIASY-GDDLKGDWNLIS-IIEKAEQIDGIERIRI 229

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
            +  PR   +  I    ++  + P+ HL +QSG    L+ MNR++TA EY++I+ ++R  
Sbjct: 230 GSIEPRFFDEDTISKIKNMKKMCPHFHLSLQSGCTETLERMNRKYTAEEYKEIVYKLREN 289

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
             D++I++D IVGFPGETD++F  T D + +I  A+   FKYSPR GT  + M  Q++ N
Sbjct: 290 ISDVSITTDVIVGFPGETDEEFEKTYDFLKEIELAKMHVFKYSPREGTKAAAMKNQINGN 349

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
           VK +R   L +  +  +  F    + + ++VL EK
Sbjct: 350 VKDKRSAELIELDKINEKKFMSKFLDREMDVLFEK 384


>gi|158319633|ref|YP_001512140.1| MiaB-like tRNA modifying enzyme YliG [Alkaliphilus oremlandii
           OhILAs]
 gi|238065284|sp|A8MLX7|RIMO_ALKOO RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|158139832|gb|ABW18144.1| MiaB-like tRNA modifying enzyme YliG [Alkaliphilus oremlandii
           OhILAs]
          Length = 438

 Score =  205 bits (521), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 137/450 (30%), Positives = 232/450 (51%), Gaps = 36/450 (8%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+  +  +  +F S  +  VN  +DA++IV+NTC   E A ++  + +  +  L
Sbjct: 7   SLGCSKNLVVTEEIIGLFKSNHFNIVNKKEDAEIIVINTCGFIESAKQEAINTILEMAKL 66

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
           KN++ K      ++VAGC+ Q   +E+ +  P V++ +    Y ++ + +E       ++
Sbjct: 67  KNNKCK-----YLIVAGCLVQRYKKELEKAIPEVDLFISISEYKQIWKEIEN------LL 115

Query: 151 DTDYSVEDKFERLS-IVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209
           D +   E   +  + ++  G N      A+L I EGCD  CT+C +P  +G  ISR++  
Sbjct: 116 DLETGKESNLDYHNRVLTTGSN-----MAYLKIGEGCDNHCTYCAIPNIQGPYISRTMED 170

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLD--GEKCTFSDLLYSLSEIKGLVRLRYTT 267
           ++ EAR L   G+ E+ ++ Q+   +   GLD  GE      LL  L +I+ +  +R+  
Sbjct: 171 ILKEARNLAKQGIKELIVIAQDTTKY---GLDIYGE-ARLPQLLEELCKIEDIEWVRFLY 226

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
            +P  ++D LIK  G+ D +  Y  +P+Q  SD +LK MNR+      R II++IR   P
Sbjct: 227 VYPESITDELIKVVGENDKICNYFDIPIQHISDSVLKRMNRKSDGASVRNIIEKIRREIP 286

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
           D+ I +  IVGFPGET++DF+   + V++  + +   F YS    TP + + EQ+    K
Sbjct: 287 DVIIRTTLIVGFPGETEEDFKELYEFVEETKFDKLGVFAYSKEDNTPAAKLKEQIHHATK 346

Query: 388 AERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVL 440
             RL   + LQ+K+  + +   +  VG + +VLIE   K     +GR+    P +  VV 
Sbjct: 347 KSRLRKIMALQEKISRESL---EQKVGNVYKVLIESRTKGGNYYIGRTYMDVPDMDGVVY 403

Query: 441 ---NSKNHNIGDIIKVRITDVKISTLYGEL 467
              N+K + +   +  RI   K   L+GEL
Sbjct: 404 IVNNTKENLMNTFVDCRIQRAKDYDLFGEL 433


>gi|260587855|ref|ZP_05853768.1| RNA modification enzyme, MiaB family [Blautia hansenii DSM 20583]
 gi|260542120|gb|EEX22689.1| RNA modification enzyme, MiaB family [Blautia hansenii DSM 20583]
          Length = 446

 Score =  205 bits (521), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 139/445 (31%), Positives = 225/445 (50%), Gaps = 20/445 (4%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ DS  M  M    GY   N   +A++IV+NTC     A E+  + +     L
Sbjct: 8   SLGCDKNLADSEEMLGMLVENGYTLTNDETEAEIIVVNTCAFIHDAKEESINSI-----L 62

Query: 91  KNSRIKEGGDL-LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149
           + +R K  G L +++V GC+AQ   EEI++  P V+ V+G  ++  + + L+    G+R 
Sbjct: 63  EMARYKTEGVLKVLLVTGCLAQRYKEEIIKEIPEVDAVLGTTSFGDIIKALDIVFEGERY 122

Query: 150 VD-TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           ++  D +   +  +  ++  G     G   +L I EGCDK CT+C++P  RG   S  + 
Sbjct: 123 LEFKDINALTEISKKRVLTTG-----GYYGYLKIAEGCDKRCTYCIIPKLRGNYRSIPME 177

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
           Q++ +A  L   GV E+ L+ Q    + GK + G+KC    LL  L +I G+  +R    
Sbjct: 178 QLISQAEYLAGQGVRELILVAQETTVY-GKDIYGKKC-LHKLLKELCKIPGIQWIRILYC 235

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
           +P ++   LI+   +   +  YL LP+Q  SD+ILK M RR T  E   I+  +R   PD
Sbjct: 236 YPEEIYPELIQTMKEEKKICHYLDLPIQHCSDKILKKMGRRTTKQELIDIVTLLRKEIPD 295

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           I + +  I GFPGET++D    M+ +D + + +   F YS    TP +NM  Q+ E VK 
Sbjct: 296 IILRTTLITGFPGETEEDHEELMEFIDTMEFDRLGVFTYSAEEDTPAANMPNQIAEEVKQ 355

Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVLNSKN 444
           +R   L +  +E  +   +  +G  +EV+IE    ++   VGR+    P +   +  + +
Sbjct: 356 DRQAELMELQQEISIDKGNDKIGTCVEVMIEGKVADENAYVGRTYGDAPNVDGYIFINTD 415

Query: 445 HNI--GDIIKVRITDVKISTLYGEL 467
             +  GD  +V +T      L GEL
Sbjct: 416 TELMSGDFARVHVTGALEYDLIGEL 440


>gi|238066628|sp|Q5N1N6|RIMO_SYNP6 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
          Length = 452

 Score =  205 bits (521), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 142/448 (31%), Positives = 230/448 (51%), Gaps = 35/448 (7%)

Query: 33  GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92
           GC+ N  D+  M  +    GY    +   AD++V+NTC   + A E+       +R L  
Sbjct: 13  GCEKNRIDTEHMIGLLAEAGYGIDANEALADVVVVNTCSFIQAAREE------SVRTL-- 64

Query: 93  SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDT 152
             + E G   +V+AGC+AQ   +++L   P    +VG   Y+R+ ++L+R   G+RV   
Sbjct: 65  VELAESGKK-IVIAGCLAQHFQDQLLAELPEAIALVGTGDYHRIVDVLQRTESGERV--N 121

Query: 153 DYSVEDKFERLSIVDGGYNRKRGVT---AFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209
             S E  F    I D    R R  T   A+L + EGCD  C FC++P+ RG   SRS+  
Sbjct: 122 AISQEPSF----IADENLPRYRTTTSAVAYLRVAEGCDYRCAFCIIPHLRGKRRSRSIES 177

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE-KCTFSDLLYSLSEIK-GLVRLRYTT 267
           +V EA++L   GV E+ L+ Q    +   GLD   K   ++LL  L ++    +R+ Y  
Sbjct: 178 IVAEAKQLAAEGVQELVLISQITTNY---GLDRYGKPMLAELLRQLGQVDVPWIRIHY-- 232

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
           ++P  ++  +I A  +   ++PYL LP+Q     ILK+MNR        +II++++   P
Sbjct: 233 AYPTGLTPEVIAAIRETHNVLPYLDLPLQHSHPEILKAMNRPWQGNVNDRIIEKLKEALP 292

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
           D  + + FI GFPGET++ FR     + +  +     F +SP  GT   ++   V ++VK
Sbjct: 293 DAVLRTTFIAGFPGETEEHFRHLQQFIQRHEFDHVGVFAFSPEEGTAAIDLPNPVPDDVK 352

Query: 388 AER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVL 440
             R   L+  Q+ + E++   N A +G++++VLIE+     G  +GRS    P +  VV 
Sbjct: 353 EARRDALMATQQPIAERR---NRAQIGRLVDVLIEQEHPSTGLKIGRSARFAPEVDGVVY 409

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
              +  +G ++ VRITD  I  L+GE+ 
Sbjct: 410 VQGDAALGQLVTVRITDADIYDLHGEVA 437


>gi|153002973|ref|YP_001377298.1| MiaB-like tRNA modifying protein YliG [Anaeromyxobacter sp.
           Fw109-5]
 gi|238065286|sp|A7H6G8|RIMO_ANADF RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|152026546|gb|ABS24314.1| MiaB-like tRNA modifying enzyme YliG [Anaeromyxobacter sp. Fw109-5]
          Length = 470

 Score =  205 bits (521), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 145/455 (31%), Positives = 232/455 (50%), Gaps = 28/455 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R ++ + GC  N  DS  M       GY        AD+IV+NTC   E A E+    + 
Sbjct: 5   RVYLHTLGCPKNRVDSEVMLGTLTGAGYRLERDPAQADVIVVNTCGFIESAKEESVDAIV 64

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +  +K    +EG    +VV GC+ Q   EE+    P V+  +G   Y  +  ++  A+ 
Sbjct: 65  ELAGMK----QEGRCKKLVVTGCLVQRHAEELSAELPEVDHFLGTGAYAEIARVVSDAQA 120

Query: 146 GKRVV-DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            + VV D D+       R+       N     TA+L I EGCD  C FC++P  RG + S
Sbjct: 121 KRLVVPDPDFVHSAATPRV-------NSLPSHTAYLKISEGCDNACAFCIIPKLRGAQRS 173

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R +  VV EA  L   G  E++L+ Q++ A+ G  L G K     LL  L ++ G+  LR
Sbjct: 174 RPVDDVVAEAAALAAQGTVELSLVAQDLTAY-GYDLPG-KVRLHHLLPELCKVDGIRWLR 231

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
              ++PRD+ D L++       ++ YL +P+Q  SDR+L+SM R   +   R+++ R+R+
Sbjct: 232 LHYAYPRDVPDALVEVIAREPKIVKYLDMPLQHSSDRLLRSMKRGRDSVFLRELLARLRA 291

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             P IA+ +  IVG PGET++DF   +  V++  + +   F++SP  GTP ++M EQV +
Sbjct: 292 RVPGIALRTSLIVGLPGETEEDFEDLVRFVEEQRFERLGVFEFSPEDGTPAADMAEQVPD 351

Query: 385 NVK---AERLLCLQKKL-REQQVSFNDACVGQIIEVLIEKHGKE-----KGKLVGRSPWL 435
            VK    +R++ LQ+++ RE Q     A VG+ +EVL+E   +E      G+   ++P +
Sbjct: 352 VVKRARRDRIMALQQEISREHQ----RAMVGRRLEVLVEGRAEETEHLLAGRHAQQAPEI 407

Query: 436 QSVV-LNSKNHNIGDIIKVRITDVKISTLYGELVV 469
             +  +N      G+++ V ITD     L G +V 
Sbjct: 408 DGITYVNDGVAYPGELVTVEITDASEYDLVGHVVA 442


>gi|315424979|dbj|BAJ46654.1| tRNA modifying enzyme [Candidatus Caldiarchaeum subterraneum]
          Length = 432

 Score =  205 bits (521), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 137/460 (29%), Positives = 237/460 (51%), Gaps = 48/460 (10%)

Query: 20  QCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEK 79
           Q ++PQ+ + + YGC  N  D      +   QGY  V   ++AD +VL TC +++  A++
Sbjct: 7   QRVMPQKVYAEVYGCSANQADGEIALGILQKQGYIMVERPNEADYVVLVTCAVKKPTADR 66

Query: 80  VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL 139
           +   + +  +L            ++VAGC+A  E E + R +P   V++ P++   +   
Sbjct: 67  MIHRIKKFSSLGPR---------LIVAGCMATGEAERVRRVAPEA-VLLPPRSITEVSAA 116

Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYN-------RKRGVTAFLTIQEGCD-KFCT 191
           +E   F                     DGG         RK  V A + + EGC    C+
Sbjct: 117 IEGHGF---------------------DGGGTKLGLPRLRKNPVIAIVPVSEGCRWSRCS 155

Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLL 251
           FC+VP +R    S  +  VVDE RK ++ G  E+ L  Q++ ++   GL+  +    +L+
Sbjct: 156 FCIVPRSRPGYESYPVRAVVDEVRKAVNEGCREVWLTSQDMGSY---GLESGRNLLPELI 212

Query: 252 YSLSEIKGLVRLRYTTSHP---RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
            S++ ++G    R    +P   + +   L+KA+   + +  ++H+PVQSGSD++LK MNR
Sbjct: 213 ESVNSLEGKFYTRIGMMNPIYLKPILQKLVKAYSG-EKIYKFIHVPVQSGSDKVLKDMNR 271

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
            H+   +  +++  R   P I +S+D IVG+P ETD+DF  T+ LV+K   A     +Y 
Sbjct: 272 GHSVQLFYHVVEAFRRRFPSITVSTDLIVGYPTETDEDFEQTLKLVEKTRPAVVNVSRYF 331

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL 428
           PR GTPG   L+ +  +V A R+  L   L + Q+  N+  +G + EVLI + GK KGK+
Sbjct: 332 PRPGTPGEG-LKTLPHHVVARRVSELNDLLSKIQLESNEHWLGWVGEVLINEVGK-KGKM 389

Query: 429 VGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           +GR+   + +VL++   ++G  ++  + DV+ + L G ++
Sbjct: 390 MGRNFAYRPIVLDAPRESLGRFVEAEVVDVEKNYLLGRVL 429


>gi|225028525|ref|ZP_03717717.1| hypothetical protein EUBHAL_02804 [Eubacterium hallii DSM 3353]
 gi|224954168|gb|EEG35377.1| hypothetical protein EUBHAL_02804 [Eubacterium hallii DSM 3353]
          Length = 450

 Score =  204 bits (520), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 122/407 (29%), Positives = 217/407 (53%), Gaps = 31/407 (7%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  ME++    GYE V+  + AD+ ++NTC +   A  K    + R +  
Sbjct: 10  TLGCKVNQYETDAMEEILEKAGYEIVSFKETADVYIINTCSVTNMADRKSRQMIHRAK-- 67

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR-- 148
                K   D ++V AGC  QA  EE+ +++   +++VG      + ++LE     K   
Sbjct: 68  -----KNNPDAIIVAAGCYVQAAEEELAKKNE-ADILVGNNKKKDIAQILEEYFAAKEPE 121

Query: 149 --------VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
                   V+D +++ E  +E L+I    +       A++ IQ+GC++FC++C++PYTRG
Sbjct: 122 QEVPVVSEVIDINHTKE--YEDLTI----HKVNEHTRAYIKIQDGCNQFCSYCIIPYTRG 175

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
              S++  +V++E + L   G  EI L G +++++   G D    T  D++  + +++ +
Sbjct: 176 RIRSKNPEEVIEEVKNLAAQGYKEIVLTGIHLSSY---GKDLGTVTLLDVIKRIQQVEDV 232

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R  +  PR +++  +K     D + P+ HL +QSG D  LK MNR++T  EY + ++
Sbjct: 233 ERIRLGSLEPRIITEEFVKELVKCDKVCPHFHLSLQSGCDETLKRMNRKYTTEEYEEALN 292

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
            +R      A+++D I GF GET+++F  T   ++KI   +   FKYS R GT    M  
Sbjct: 293 ILRKYYEHPALTTDVIAGFVGETEEEFEKTRAYLEKINLYEMHIFKYSVREGTRAQKMSG 352

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQ----IIEVLIEKHGK 423
            V E VK ER   L    +  + +F +  VG+    ++E ++EK+GK
Sbjct: 353 HVPEQVKTERSEVLLSMAKRHKTAFEEWYVGRKEKVLLEEIVEKNGK 399


>gi|320530820|ref|ZP_08031858.1| MiaB-like tRNA modifying enzyme [Selenomonas artemidis F0399]
 gi|320136906|gb|EFW28850.1| MiaB-like tRNA modifying enzyme [Selenomonas artemidis F0399]
          Length = 438

 Score =  204 bits (520), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 140/452 (30%), Positives = 231/452 (51%), Gaps = 25/452 (5%)

Query: 20  QCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEK 79
           +C++    F+ + GC++N +++  ME +F ++GY+ V   + AD+ V+NTC +   +  K
Sbjct: 5   RCVLSAVAFM-TLGCKVNQFETETMEGLFRARGYDVVPFEESADVYVVNTCSVTHLSDRK 63

Query: 80  VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL 139
               + R     N R        + V GC AQ   EEI R    V VV+G +   ++ + 
Sbjct: 64  SRQIIRRAAR-TNPRA------CIAVCGCYAQVAPEEI-RALDGVRVVIGTKERAQIVDY 115

Query: 140 LE---RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
           +E   RA  G     TD      FE + +     +  +   AFL I++GC  FCTFC++P
Sbjct: 116 VEEAMRAESGISGQITDIMQARTFEDIPLA----HMPQRTRAFLKIEDGCQNFCTFCIIP 171

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256
           Y RG   SR L+ V  E  ++   G  EI L G ++ A+ G  L G + T +D   +   
Sbjct: 172 YARGPVKSRELAAVRRETERIAAAGFHEIVLTGIHLGAY-GIDLPG-RPTLADACRTALS 229

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           +  L RLR  +    ++S+ L++          +LHLP+Q+GSD +L +MNR +    + 
Sbjct: 230 LPELRRLRLGSLESVELSNDLLELIRTEPRFAAHLHLPLQAGSDGVLTAMNRHYDTAAFA 289

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
           ++I+ +R   P +A+S+D IVGFPGET+  F  ++D V ++G+A+   F YS R GTP +
Sbjct: 290 RLIEDVRRAVPGVAVSTDIIVGFPGETEAQFEESLDFVRRMGFARMHVFPYSARRGTPAA 349

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE--KHGKEKGKLVGRSPW 434
              +QV   ++ ER   +Q    E  V ++ A +G + +VL E   HG   G       +
Sbjct: 350 RRPDQVPAPIRKERAARMQALAEELAVGYHRAALGTVTDVLFETTAHGVTDGLT---DTY 406

Query: 435 LQSVVLNSKNHNIGDIIKVRITDVKISTLYGE 466
           ++  V        GD++ VR+T +    ++GE
Sbjct: 407 IR--VYTDAPVTRGDLVSVRLTRLFRDGVWGE 436


>gi|118581497|ref|YP_902747.1| MiaB-like tRNA modifying protein YliG [Pelobacter propionicus DSM
           2379]
 gi|238066600|sp|A1ATL9|RIMO_PELPD RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|118504207|gb|ABL00690.1| SSU ribosomal protein S12P methylthiotransferase [Pelobacter
           propionicus DSM 2379]
          Length = 450

 Score =  204 bits (520), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 142/459 (30%), Positives = 234/459 (50%), Gaps = 35/459 (7%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCH-IREKAAEKVYSF 83
           Q+  + S GC  N+ D+  M  +   Q YE      +AD+I++NTC  I+E   E + + 
Sbjct: 7   QKVSMVSLGCSKNLVDAEVMLGLLARQEYEITTDEREADIIIVNTCSFIKEAKQESIDAI 66

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-ER 142
           L       + R        ++V+GC+ Q   EE+ R  P V++ +G   Y R+ E+L E+
Sbjct: 67  LDLAERKNDGRCH-----TLIVSGCLPQRYQEELARELPEVDIFIGTGDYPRIAEILAEK 121

Query: 143 ARFGKRVV---DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           +   +++    D D+  ++   RL       N      ++L I EGC   C++C++P  R
Sbjct: 122 SGTDEQLCYIGDPDFVFDETLPRL-------NSSPAWFSYLKIGEGCSNRCSYCIIPKLR 174

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G   SR L  +V EA +L   GV E+ ++ Q++  +     DG   T   LL  L +I G
Sbjct: 175 GPYRSRPLEALVAEAEQLASRGVKELNIISQDITRYGSDMEDG--TTLETLLRRLVQIDG 232

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           +  +R   ++P  +SD LI    D   +  YL +P+Q  SD +LK M RR    + R+++
Sbjct: 233 IQWIRLLYAYPDGISDALIALIRDEPKICKYLDIPLQHISDPVLKLMRRRSNEQQIRELL 292

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            ++R   P +A+ +  IVGFPGET +DF + M  V++  + +   F YS   GTP + M 
Sbjct: 293 AKLRREIPTLALRTSLIVGFPGETMEDFTSLMQFVEQARFDRLGVFCYSREEGTPAATMP 352

Query: 380 EQVDENVKAER---LLCLQKKLREQQVSF--NDACVGQIIEVLIEKHGKE-----KGKLV 429
           +QV E VK ER   L+ +Q +L     SF  N   +G   +V++E + +E     KG+  
Sbjct: 353 DQVSERVKRERHRKLMRIQARL-----SFKRNRELIGTTEQVIVEGYSEETELLLKGRSS 407

Query: 430 GRSPWLQ-SVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
            ++P +   V + +   ++GDI+ +RITD     L GE+
Sbjct: 408 RQAPDIDGQVYITAGTADVGDIVALRITDSSDYDLIGEI 446


>gi|300867546|ref|ZP_07112196.1| Ribosomal protein S12 methylthiotransferase rimO [Oscillatoria sp.
           PCC 6506]
 gi|300334434|emb|CBN57366.1| Ribosomal protein S12 methylthiotransferase rimO [Oscillatoria sp.
           PCC 6506]
          Length = 439

 Score =  204 bits (520), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 134/445 (30%), Positives = 228/445 (51%), Gaps = 27/445 (6%)

Query: 33  GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92
           GC+ N  D+  M  +    GY+   + + AD +++NTC   + A E+    L  +    N
Sbjct: 13  GCEKNRIDTEHMIGLLAQAGYQVDANEELADYVIVNTCSFIQAAREESVRTLVELAQ-AN 71

Query: 93  SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDT 152
            +I        V+AGC+AQ   +++L   P    +VG   Y+++  ++E+   G RV  T
Sbjct: 72  KKI--------VIAGCMAQHFQQDLLNELPEAVALVGTGDYHQIVGVIEQVEKGDRV--T 121

Query: 153 DYSVEDKFERLSIVDGGYNRKRGV---TAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209
             S E  +    I D    R R      A+L I EGCD  C FC++P+ RG + SR++  
Sbjct: 122 LVSAEPTY----IADENTPRYRTTPEAVAYLRIAEGCDYRCAFCIIPHLRGNQRSRTIES 177

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK-GLVRLRYTTS 268
           +V EA +L   GV EI L+ Q    + GK + GE    ++LL++L ++    +R+ Y  +
Sbjct: 178 IVAEAEQLAAEGVKEIILISQITTNY-GKDIYGEP-KLAELLHALGKVDIPWIRMHY--A 233

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
           +P  ++  ++ A  +   ++PYL LP+Q     IL++MNR   A     II+RI++  PD
Sbjct: 234 YPTGLTPKVMAAIQETPNILPYLDLPLQHSHPEILRAMNRPFQAGVNDSIIERIKASMPD 293

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
             + + FIVGFPGET++     ++ V +  +     F +SP  GTP  ++  Q+ + V  
Sbjct: 294 AILRTTFIVGFPGETEEHAAHLLEFVKRHEFDHVGVFTFSPEEGTPAHDLPNQLPQEVME 353

Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVVLNSKN 444
            R   +    +   +  N   VG++++VL+E+   E G+L+GR    SP +  +V     
Sbjct: 354 ARREAVMAAQQPISLKNNQKSVGKVVDVLLEQENPETGELIGRSARFSPDVDGLVYVEGE 413

Query: 445 HNIGDIIKVRITDVKISTLYGELVV 469
            ++G +++V IT+  I  LYG +  
Sbjct: 414 ASLGAMVRVNITNADIYDLYGSVAT 438


>gi|94968239|ref|YP_590287.1| MiaB-like tRNA modifying enzyme [Candidatus Koribacter versatilis
           Ellin345]
 gi|94550289|gb|ABF40213.1| MiaB-like tRNA modifying enzyme [Candidatus Koribacter versatilis
           Ellin345]
          Length = 495

 Score =  204 bits (519), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 138/458 (30%), Positives = 226/458 (49%), Gaps = 34/458 (7%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           FFV+++GC+    D   +E     +G  R +S  DA+++VLNTC +   A +   + + R
Sbjct: 41  FFVENFGCRATQADGAAIERQLLEKGLARGSSAIDAEVVVLNTCTVTASADQDARAAIRR 100

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER---- 142
           I+       +   +  ++V GC AQ   EEI R    V++VVG    + LP L       
Sbjct: 101 IK-------RGNPEARIIVTGCYAQRAPEEISRIEG-VSLVVGNSHKHALPTLAANLAPK 152

Query: 143 -----ARFGKRVVDTDYS---VEDKFERLSIV-------DGGYNRKRGVTAFLTIQEGCD 187
                A  G     T+ +   + D F    ++       +    R R     L IQ+GC+
Sbjct: 153 GFVSVASIGVGTAATEAAPVVIGDIFAHTELMAAPVFDSESAAERTR---PNLKIQDGCN 209

Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTF 247
             C+FCV+PY RG   S ++  V+ E   L++ G  EI L G N+  W G  L   +  F
Sbjct: 210 NRCSFCVIPYVRGKSRSLTMDSVLHEVDSLVEAGYKEIVLSGINLGRW-GNDLR-PRVRF 267

Query: 248 SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307
            +L+ ++ E   + ++R ++  P D S+ LI    +   +  + H P+QSGSDRIL+ M+
Sbjct: 268 EELVRNIVENTAIPKVRISSVEPMDWSNELIALVAESPKICKHAHAPLQSGSDRILRKMH 327

Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           RR+  + Y   ++RIR+  P  AI +D +VGFPGETD+ F  T   ++ + +     F Y
Sbjct: 328 RRYRPWHYADRLERIRTAMPQAAIGADVMVGFPGETDEHFEETRSFIESLPFTYLHVFTY 387

Query: 368 SPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK 427
           S R GTP + M EQV   V  ER   L+  + E++  F ++ VG+ IE +   + ++ G 
Sbjct: 388 SSRPGTPSAAMAEQVPVYVARERNKVLRDLIAEKKHGFMESLVGKEIEAVTLTNQRD-GM 446

Query: 428 LVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYG 465
               +   Q  ++ +  H    +++VR+  V   +L G
Sbjct: 447 TEALTDNYQKAMI-AGEHTSNQLVRVRLDRVDGESLLG 483


>gi|220915232|ref|YP_002490536.1| MiaB-like tRNA modifying enzyme YliG [Anaeromyxobacter dehalogenans
           2CP-1]
 gi|219953086|gb|ACL63470.1| MiaB-like tRNA modifying enzyme YliG [Anaeromyxobacter dehalogenans
           2CP-1]
          Length = 469

 Score =  204 bits (519), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 140/454 (30%), Positives = 230/454 (50%), Gaps = 26/454 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R ++ + GC  N  DS  M       GY  V     A++IV+NTC   E A E+    + 
Sbjct: 4   RVYMHTLGCPKNRVDSEVMLGTLAEAGYRLVQDPAQAEVIVVNTCGFIESAKEESVEAIV 63

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            + + K    +EG    +VV GC+ Q   EE+ R  P V+  +G   Y  +  ++  A+ 
Sbjct: 64  ELADQK----REGRCRKLVVTGCLVQRHAEELARELPEVDHFLGTGAYQDVARIVSDAQA 119

Query: 146 GKRVV-DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            + VV D D+       R+       N     TA+L I EGCD  C FC++P  RG + S
Sbjct: 120 KRLVVPDPDFVHSSATPRV-------NSLPSHTAYLKIAEGCDNACAFCIIPKLRGGQRS 172

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R +  +V EA  L   G  E++L+ Q++ A+ G+ L G K     LL  L+++ G+  +R
Sbjct: 173 RPIDDLVAEAAALAAQGTVELSLVAQDLTAY-GQDLPG-KVRLHHLLPELAKVDGIRWIR 230

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
              ++PRD+ D L+ A  D   ++ YL +P+Q  SDR+L++M R   +   R ++ R+RS
Sbjct: 231 LHYAYPRDVPDALVAAIADEPKIVKYLDMPLQHSSDRLLRAMKRGRDSVFLRDLLARLRS 290

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             P +A+ +  IVG PGET+ DF   +  V++  + +   F+YS   GTP + M +QV +
Sbjct: 291 RIPGLALRTALIVGLPGETEADFEDLLRFVEEQRFERLGVFEYSAEEGTPAAEMADQVPD 350

Query: 385 NVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-----KGKLVGRSPWLQ 436
            +K E   R++ +Q+ +     +   A +G+ +EVL+E   +E      G+   ++P + 
Sbjct: 351 ALKRERRDRIMAVQQAISR---AHQQAMIGRRVEVLVEGRAEETEHLLAGRHAQQAPEID 407

Query: 437 SVV-LNSKNHNIGDIIKVRITDVKISTLYGELVV 469
            +  +N      G+I+ V ITD     L G +V 
Sbjct: 408 GLTYINDGVAYPGEIVTVEITDAAEYDLVGRVVA 441


>gi|158334864|ref|YP_001516036.1| hypothetical protein AM1_1701 [Acaryochloris marina MBIC11017]
 gi|238065264|sp|B0CB83|RIMO_ACAM1 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|158305105|gb|ABW26722.1| conserved hypothetical protein [Acaryochloris marina MBIC11017]
          Length = 443

 Score =  204 bits (519), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 144/455 (31%), Positives = 235/455 (51%), Gaps = 37/455 (8%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V   GC+ N  D+  M  +    GY   +    AD +++NTC   + A E+    L  + 
Sbjct: 9   VAHLGCEKNRVDTEHMLGLLVEAGYPVDSDEAFADYVIVNTCSFIQAAREESVRTLVELA 68

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
              N +I        V+ GC+AQ   EE+L   P    +VG   Y+++ ++++RA  G+R
Sbjct: 69  E-ANKKI--------VITGCMAQHFQEELLEELPEAVALVGTGDYHKIVDVIQRAEAGER 119

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVT---AFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           V   + S E  +    I D    R R  T   A++ I EGCD  C FC++P+ RG + SR
Sbjct: 120 V--KEVSPEPTY----IADETVPRYRTTTEGTAYVRIAEGCDYGCAFCIIPHLRGKQRSR 173

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK-GLVRLR 264
           S+  +V EA++L   GV E+ L+ Q    + G  L G K   ++LL +L E+    +R+ 
Sbjct: 174 SIESIVAEAQQLAAEGVQELILISQITTNY-GIDLYG-KPQLAELLRALGEVDVPWIRMH 231

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           Y  ++P  ++  ++ A  + D ++PYL LP+Q     +L++MNR        QII++I++
Sbjct: 232 Y--AYPTGLTPEVMAAIQETDNVLPYLDLPLQHSHPEVLRAMNRPWQGQVNDQIIEKIKT 289

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             PD  + + FIVGFPGETD+ F    + V +  +     F +SP  GTP  ++  Q+ +
Sbjct: 290 ALPDAVLRTTFIVGFPGETDEHFEHLCEFVQRHEFDHVGVFTFSPEEGTPAFDLPNQLPQ 349

Query: 385 NV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV-- 439
           +V   + +RL+ LQ+ +  QQ   N   VG+ ++VLIE+     G+L+GRSP   + V  
Sbjct: 350 DVMDARRDRLMALQQPISWQQ---NQQEVGKTVQVLIEQEHPGSGQLIGRSPRFSADVDG 406

Query: 440 ------LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                   + +  +G +  V+ITD     L G+LV
Sbjct: 407 LVYIDPGEAPSPRLGSLTPVQITDADAYDLQGQLV 441


>gi|313895534|ref|ZP_07829090.1| ribosomal protein S12 methylthiotransferase RimO [Selenomonas sp.
           oral taxon 137 str. F0430]
 gi|312975660|gb|EFR41119.1| ribosomal protein S12 methylthiotransferase RimO [Selenomonas sp.
           oral taxon 137 str. F0430]
          Length = 442

 Score =  204 bits (519), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 145/440 (32%), Positives = 230/440 (52%), Gaps = 33/440 (7%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEK-VYSFLGRIRN 89
           S GC  N+ D+  M  +    G E      +AD++++NTC   + A E+ + + LG    
Sbjct: 7   SLGCAKNLVDTEVMLGIMREHGIELTAEPAEADILIVNTCAFIQSAKEESITTVLGMADY 66

Query: 90  LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149
            +  R +      ++VAGC+ Q  G+++L   P  N ++G   + R+ E++E    G+R+
Sbjct: 67  KETGRCRS-----LIVAGCLGQRYGQQLLDEIPEANAIIGTGAWSRIMEVVEETLKGRRL 121

Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGV---TAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           V    + ED     +I D    R R     TA++ I EGCD  C FC +P  RG   SR+
Sbjct: 122 V---IAGEDD----TIYDANTPRLRTTPNYTAYVKIAEGCDHRCAFCAIPLIRGGFRSRA 174

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRY 265
           +  +V EAR+L ++GV E+ L+ Q+   +   GLD   K   + LL  L++I+ +  +R 
Sbjct: 175 MEDIVSEARELAESGVRELVLIAQDSANY---GLDLYRKPMLASLLRELAKIEKISWIRV 231

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
             S+P+  SD LI+       ++ Y+ LP+Q   D +L+SMNR  T     ++I ++R  
Sbjct: 232 LYSYPKYFSDELIEVFATEPKVVKYVDLPLQHAHDAVLRSMNRPDTRAGIERLIQKLRER 291

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P + I S FIVGFPGETD  ++A  D V+   + +   F YS    TP S M ++V E 
Sbjct: 292 IPGVTIRSTFIVGFPGETDTHYQALRDFVEAQRFDKLGIFTYSEEEDTPASLMRQKVSEE 351

Query: 386 VKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRS----PWL-- 435
           V  ER   L+ LQ K+ E+    N +   + I+VLIE +  +++G  VGRS    P +  
Sbjct: 352 VMQERYHDLMSLQSKISEE---INISLENKEIDVLIEGRDSEQQGIAVGRSYREAPEVDG 408

Query: 436 QSVVLNSKNHNIGDIIKVRI 455
           Q  +       IGDI++VR+
Sbjct: 409 QIYIEGDVGSCIGDIVRVRL 428


>gi|313897043|ref|ZP_07830590.1| tRNA methylthiotransferase YqeV [Selenomonas sp. oral taxon 137
           str. F0430]
 gi|312974490|gb|EFR39958.1| tRNA methylthiotransferase YqeV [Selenomonas sp. oral taxon 137
           str. F0430]
          Length = 431

 Score =  204 bits (519), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 138/441 (31%), Positives = 225/441 (51%), Gaps = 24/441 (5%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N +++  ME +F ++GY+ V   + AD+ V+NTC +   +  K    + R    
Sbjct: 8   TLGCKVNQFETETMEGLFRARGYDVVPFEESADVYVVNTCSVTHLSDRKSRQIIRRAAR- 66

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE---RARFGK 147
            N R        + V GC AQ   EEI R    V VV+G +   ++ + +E   RA  G 
Sbjct: 67  TNPRA------CIAVCGCYAQVAPEEI-RALEGVRVVIGTKERAQIVDYVEEAMRAESGI 119

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
               TD      FE + +     +  +   AFL I++GC  FCTFC++PY RG   SR L
Sbjct: 120 SGQITDIMQARTFEDIPLA----HMPQRTRAFLKIEDGCQNFCTFCIIPYARGPVKSREL 175

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
           + V  E  ++   G  EI L G ++ A+ G  L G + T +D   +   +  L RLR  +
Sbjct: 176 AAVRRETERIAAAGFHEIVLTGIHLGAY-GIDLPG-RPTLADACRTALSLPELRRLRLGS 233

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
               ++S+ L++          +LHLP+Q+GSD +L +MNR +    + ++I+ +R   P
Sbjct: 234 LESVELSNDLLELIRTEPRFAAHLHLPLQAGSDGVLTAMNRHYDTAAFARLIEDVRRAVP 293

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
            +A+S+D IVGFPGET+  F  ++D V ++G+A+   F YS R GTP +   +QV   ++
Sbjct: 294 GVAVSTDIIVGFPGETEAQFEESLDFVRRMGFARMHVFPYSARKGTPAARRPDQVPAPIR 353

Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIE--KHGKEKGKLVGRSPWLQSVVLNSKNH 445
            ER   +Q    E  V ++ A +G + +VL E   HG   G       +++  V      
Sbjct: 354 KERAARMQALAEELAVGYHRAALGTVTDVLFETTAHGVTDGLT---DTYIR--VYTDAPV 408

Query: 446 NIGDIIKVRITDVKISTLYGE 466
             GD++ VR+T +    ++GE
Sbjct: 409 TRGDLVSVRLTRLFRDGVWGE 429


>gi|297565219|ref|YP_003684191.1| MiaB-like tRNA modifying enzyme YliG [Meiothermus silvanus DSM
           9946]
 gi|296849668|gb|ADH62683.1| MiaB-like tRNA modifying enzyme YliG [Meiothermus silvanus DSM
           9946]
          Length = 457

 Score =  204 bits (519), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 140/452 (30%), Positives = 225/452 (49%), Gaps = 38/452 (8%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC   + DS ++     ++GYE   + +DA+++V+NTC     A E+  S +G     
Sbjct: 9   SLGCPKALVDSEQILSRLRAEGYETSPTYEDAEVVVVNTCGFITPAVEESLSAIGEA--- 65

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               + E G   V+V GC+  A  E I    P V  V GP    ++ E + R      V+
Sbjct: 66  ----LAENGK--VIVTGCLG-ARPEVIQEAHPQVLEVTGPGQVDKVLEAVHR------VL 112

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
             D    D F  L         +    A+L I EGC+  C+FC++P  RG+++SR   ++
Sbjct: 113 PPD---ADPFTALIPPQVKLTPRH--YAYLKIAEGCNHKCSFCIIPQLRGLQVSRDAGEI 167

Query: 211 VDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYSLSEIKGLVR 262
           + EA +L+  G  E+ ++ Q+ +A+      R     G   +    DL+  L+E+   VR
Sbjct: 168 LSEATRLVSTGTRELLVIAQDTSAYGVDIRHRPSEFQGRQVRAHLVDLVNELAELGAWVR 227

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           L Y   +P       + A G +   +PYL +P+Q  S +IL++M R   A  + Q I   
Sbjct: 228 LHYVYPYPHVKQLIPLMAEGKI---LPYLDVPLQHASPKILRAMRRPGGAESHLQTIREW 284

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           RS+ PD+AI S FIVGFPGET++DF   ++ + +    +  +F YS   G   + +   V
Sbjct: 285 RSIVPDLAIRSTFIVGFPGETEEDFALLLEFLREARLERVGAFTYSEVPGAEANALDNPV 344

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSV 438
            + +K ER     +  +   +  N A VG+ +EV+++ +G+E G +VGRS    P +  +
Sbjct: 345 PQEIKEERRARFMEVQQRLSLEKNQAKVGKTLEVIVDDYGEEPGMVVGRSKYDAPGIDGL 404

Query: 439 VLNSKNHN--IGDIIKVRITDVKISTLYGELV 468
           V    +    IGD+I+VRIT  +   LYGE V
Sbjct: 405 VYAETDGTVKIGDLIRVRITKAEAYDLYGETV 436


>gi|297519636|ref|ZP_06938022.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Escherichia
           coli OP50]
          Length = 271

 Score =  204 bits (518), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 102/237 (43%), Positives = 154/237 (64%), Gaps = 1/237 (0%)

Query: 233 NAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLH 292
           NAWRG+  DG   +F+DLL  ++ I G+ R+R+TTSHP + +D +I+ + D   L+ +LH
Sbjct: 1   NAWRGENYDGTTGSFADLLRLVAAIDGIDRIRFTTSHPIEFTDDIIEVYRDTPELVSFLH 60

Query: 293 LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352
           LPVQSGSDRIL  M R HTA EY+ II ++R+ RPDI ISSDFIVGFPGET +DF  TM 
Sbjct: 61  LPVQSGSDRILNLMGRTHTALEYKAIIRKLRAARPDIQISSDFIVGFPGETTEDFEKTMK 120

Query: 353 LVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQ 412
           L+  + +  ++SF +S R GTP ++M++ V E  K +RL  LQ+++ +Q ++++   +G 
Sbjct: 121 LIADVNFDMSYSFIFSARPGTPAADMVDDVPEEEKKQRLYILQERINQQAMAWSRRMLGT 180

Query: 413 IIEVLIEKHGKEK-GKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
              +L+E   ++   +L GR+   + V        IG  + V ITDV  ++L G++V
Sbjct: 181 TQRILVEGTSRKSIMELSGRTENNRVVNFEGTPDMIGKFVDVEITDVYPNSLRGKVV 237


>gi|291529131|emb|CBK94717.1| MiaB-like tRNA modifying enzyme [Eubacterium rectale M104/1]
          Length = 434

 Score =  204 bits (518), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 136/433 (31%), Positives = 222/433 (51%), Gaps = 28/433 (6%)

Query: 33  GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92
           GC++N Y++  M+ +    GYE V     AD+ V+NTC +   A  K    L + +    
Sbjct: 10  GCKVNAYETEAMQHLLEEAGYEIVPFTQKADVYVINTCSVTNMADRKSRQMLHKAK---- 65

Query: 93  SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDT 152
              K   D +VV AGC  Q   +E+L     V++V+G    + L  LLE       V DT
Sbjct: 66  ---KNNPDSIVVAAGCYVQTSEKEVLNDLS-VDIVIGNDRKHDLVRLLEEYSLDS-VNDT 120

Query: 153 DYSVED---KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209
              + D    FE L I       K    AF+ +Q+GC++FC++C++PY RG   SR    
Sbjct: 121 VDDINDGKHDFEELFID----QTKEHTRAFIKVQDGCNQFCSYCIIPYARGRVRSRRFEN 176

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT-FSDLLYSLSEIKGLVRLRYTTS 268
           V+ E  +L  NG  E+ L G +++++   G+D E+ T   +L+ +++ +KG+ R+R  + 
Sbjct: 177 VIAEVERLAANGFKEVVLTGIHLSSY---GVDFEEATGLLELIQAVNAVKGIERIRLGSL 233

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
            P+ +++        LD + P+ HL +QSG D  LK MNR++T  EY +  + +R     
Sbjct: 234 EPKIVTEHFASELSKLDKICPHFHLSLQSGCDATLKRMNRKYTTKEYERGCELLRKYFVH 293

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
            AI++D IVGFPGET+++F  T   ++ I + +   FKYS R GT  + M +Q+DE +KA
Sbjct: 294 PAITTDVIVGFPGETEEEFEQTKAYLEHIHFYEMHIFKYSKRKGTRAAVMPDQIDEQIKA 353

Query: 389 ---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG--KEKGKLVGRSPWLQSVVLNSK 443
              E+L+ L   + ++   F    +G+  E L E+     +K   VG +     V   + 
Sbjct: 354 ARSEKLIALGHDMSKE---FRKFYIGKNEEALFEEKAVIGDKEYFVGYTKEYVKVAKETA 410

Query: 444 NHNIGDIIKVRIT 456
            +    I+  RI+
Sbjct: 411 ENLENQIVSGRIS 423


>gi|298489930|ref|YP_003720107.1| MiaB family RNA modification protein ['Nostoc azollae' 0708]
 gi|298231848|gb|ADI62984.1| RNA modification enzyme, MiaB family ['Nostoc azollae' 0708]
          Length = 440

 Score =  204 bits (518), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 135/453 (29%), Positives = 225/453 (49%), Gaps = 35/453 (7%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           +   GC+ N  D+  M  +    GY    + + AD +++NTC   E A E+    L  + 
Sbjct: 9   ISHLGCEKNRIDTEHMLGLLVEAGYGVDTNDELADYVIVNTCSFIEAAREESVKTLVELA 68

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
                         VV+ GC+AQ   E++L   P    V+G   Y+++  ++ER   G+R
Sbjct: 69  EANKK---------VVITGCLAQHFQEQLLEELPEALAVIGTGDYHKIVNVIERVEQGER 119

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVT---AFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           V           +   I D    R R  T   A+L + EGCD  C FC++P+ RG + SR
Sbjct: 120 VKQI------TPQPTYIADETTPRYRTTTEGVAYLRVAEGCDYRCAFCIIPHLRGNQRSR 173

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIK-GLVRL 263
           ++  +V EA++L   GV EI L+ Q    +   GLD   K   ++LL +L ++    +R+
Sbjct: 174 TIESIVAEAKQLASQGVKEIILISQITTNY---GLDIYGKPKLAELLCALGKVDVPWIRM 230

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
            Y  ++P  ++  +I A  ++  ++PYL LP+Q     IL++MNR         II+ I+
Sbjct: 231 HY--AYPTGLTPDVIAAIQEIPNVLPYLDLPLQHSHPEILRAMNRPWQGRVNDTIIESIK 288

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           +  P   + + FIVGFPGET + F   ++  ++  +     F +SP  GTP  N+L Q+ 
Sbjct: 289 TALPSAVLRTTFIVGFPGETQEHFEHLLEFTERHEFDHVGVFTFSPEEGTPAYNLLNQLP 348

Query: 384 ENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQ 436
           + +  ER   L+ LQ+ +    +  N   V +I++VLIE+   E G+L+GR    SP + 
Sbjct: 349 QELMVERRDQLMALQQPI---SLLKNQQEVDKIVDVLIEQENPESGELIGRSGRFSPEVD 405

Query: 437 SVVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
             V    +  +G I+ V+I       LYG++++
Sbjct: 406 GQVYVKGDAGLGTIVPVKIHSADAYDLYGQIIM 438


>gi|220905819|ref|YP_002481130.1| MiaB-like tRNA modifying enzyme YliG [Cyanothece sp. PCC 7425]
 gi|219862430|gb|ACL42769.1| MiaB-like tRNA modifying enzyme YliG [Cyanothece sp. PCC 7425]
          Length = 450

 Score =  204 bits (518), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 136/451 (30%), Positives = 226/451 (50%), Gaps = 33/451 (7%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           +   GC+ N  DS  M  +    GY   N    AD +++NTC   + A E+    L  + 
Sbjct: 9   IAHLGCEKNRIDSEHMLGLLVQAGYSVDNDEALADYVIVNTCSFIQAAREESVRTLVELA 68

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
                      D  +++ GC+AQ   E++L   P    +VG   Y+++ E++E+   G+R
Sbjct: 69  E---------ADKKIIITGCMAQHFQEQLLEELPEAVALVGTGDYHKIVEVVEQVEAGQR 119

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVT---AFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           V     S E  +    I D    R R  T   A+L + EGCD  C FC++P+ RG + SR
Sbjct: 120 V--KQISAEPTY----IADETVPRYRTTTEGVAYLRVAEGCDYRCAFCIIPHLRGNQRSR 173

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK-GLVRLR 264
           S+  +V EA +L   GV EI L+ Q    + G  L G K   ++LL +L ++    +R+ 
Sbjct: 174 SIESIVAEAEQLAAEGVQEIILISQITTNY-GLDLYG-KPKLAELLRALGKVDVPWIRMH 231

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           Y  ++P  ++  +I A  +   ++PYL LP+Q     +L++MNR        +I+++I++
Sbjct: 232 Y--AYPTGLTPDVIAAIKETPNVLPYLDLPLQHSHPDVLRAMNRPWQGQVNDRIMEQIKT 289

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             P+  + + FIVGFPGET+  F+   + V +  +     F +SP  GTP  ++  Q+ +
Sbjct: 290 ALPEAVLRTTFIVGFPGETEAHFQHLCEFVQRHQFDHVGVFTFSPEEGTPAFDLPNQLSQ 349

Query: 385 NVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQS 437
            V  ER   L+ LQ+ +  Q+   N   +G+++ VLIE+   E G+L+GR    SP +  
Sbjct: 350 EVMEERREILMALQQPISYQK---NQQEIGRVVNVLIEQENPETGELIGRSARFSPEVDG 406

Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           +V       +G +  V+IT      LYG + 
Sbjct: 407 LVYVQGEARLGAMTLVKITAADPYDLYGHVA 437


>gi|320528896|ref|ZP_08029988.1| MiaB-like tRNA modifying enzyme YliG [Selenomonas artemidis F0399]
 gi|320138526|gb|EFW30416.1| MiaB-like tRNA modifying enzyme YliG [Selenomonas artemidis F0399]
          Length = 442

 Score =  204 bits (518), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 148/453 (32%), Positives = 234/453 (51%), Gaps = 33/453 (7%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEK-VYSFLGRIRN 89
           S GC  N+ D+  M  +    G E      +AD++++NTC   + A E+ + + LG    
Sbjct: 7   SLGCAKNLVDTEVMLGIMREHGIELTAEPAEADILIVNTCAFIQSAKEESITTVLGMADY 66

Query: 90  LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149
            +  R +      ++VAGC+ Q  G+++L   P  N ++G   + R+ E++E    G+R+
Sbjct: 67  KETGRCRS-----LIVAGCLGQRYGQQLLDEIPEANAIIGTGAWSRIMEVVEETLKGRRL 121

Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGV---TAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           V    + ED     +I D    R R     TA++ I EGCD  C FC +P  RG   SR+
Sbjct: 122 V---IAGEDD----TIYDANTPRLRTTPNYTAYVKIAEGCDHRCAFCAIPLIRGGFRSRA 174

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRY 265
           +  +V EAR+L ++GV E+ L+ Q+   +   GLD   K   + LL  L++I+ +  +R 
Sbjct: 175 MEDIVSEARELAESGVRELVLIAQDSANY---GLDLYRKPMLASLLRELAKIEKISWIRV 231

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
             S+P+  SD LI+       ++ Y+ LP+Q   D +L+SMNR  T     ++I ++R  
Sbjct: 232 LYSYPKYFSDELIEVFATEPKVVKYVDLPLQHAHDAVLRSMNRPDTRAGIERLIQKLRER 291

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P + I S FIVGFPGETD  ++A  D V+   + +   F YS    TP S M ++V E 
Sbjct: 292 IPGVTIRSTFIVGFPGETDTHYQALRDFVEAQRFDKLGIFTYSEEEDTPASLMRQKVPEE 351

Query: 386 VKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRS----PWL-- 435
           V  ER   L+ LQ K+ E+    N +   + I+VLIE +  +++G  VGRS    P +  
Sbjct: 352 VMQERYHDLMSLQSKISEE---INISLENKEIDVLIEGRDSEQQGIAVGRSYREAPEVDG 408

Query: 436 QSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           Q  +       IGDI++VR+       + GE V
Sbjct: 409 QIYIEGDVGSCIGDIVRVRLLQGFTYDIVGEKV 441


>gi|301168365|emb|CBW27955.1| radical SAM-superfamily protein [Bacteriovorax marinus SJ]
          Length = 458

 Score =  204 bits (518), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 143/451 (31%), Positives = 240/451 (53%), Gaps = 15/451 (3%)

Query: 28  FVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRI 87
           F  S GC  N+ DS  M       G++ V   D A++IV+NTC   E A ++    +  +
Sbjct: 12  FFTSLGCSKNLVDSQVMLGYMGLDGFKVVPEPDSAEVIVVNTCSFVEAAKQESIETILDL 71

Query: 88  RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147
            + K++  ++G    +VV+GC+AQ   +++    P V++ +G   Y ++  LL +A    
Sbjct: 72  ADYKDT--EQGNCKALVVSGCMAQRYSDQLEESLPEVDMFIGTGEYNKIVPLL-KALEDN 128

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
           ++    +    KF      D   N     TA+L I EGC++ CTFC++P  RG   SRS+
Sbjct: 129 KLEKKSFVEIPKFIHTEF-DPRLNTSPFYTAWLKISEGCNRNCTFCIIPTLRGRLRSRSV 187

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
             +V EA+KL ++GV E+ L+ Q+++ + G  LD E     +LL  L  ++G+  +R   
Sbjct: 188 ESLVTEAQKLSESGVRELNLISQDLSDY-GVDLD-ENNNLHELLNGLETVEGIDWVRLFY 245

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
            +P +++D +I+   +   +  YL +PVQ  S+ +LK MNRR T  E    ++R+R   P
Sbjct: 246 FYPDELTDEVIEQMRNSKKICSYLDMPVQHFSNNVLKRMNRRITGAEIMNRVERLRERIP 305

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
            I + +  IVGFPGE+D+DF+  ++ V K  +     F+YS   GTP   +  +VD+   
Sbjct: 306 GIVLRTSIIVGFPGESDEDFQELLEGVKKARFNHLGIFRYSDEEGTPAYRLKGKVDQETI 365

Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-----KGKLVGRSPWLQ-SVVLN 441
            +R   L +  RE     N    GQ+I+VLIE   +E     +G+ +G++P +   V++N
Sbjct: 366 DDRFDQLFETQREIVRELNAKYEGQLIDVLIEGQHEETELLIQGRHIGQAPDIDGKVIIN 425

Query: 442 S---KNHNIGDIIKVRITDVKISTLYGELVV 469
               ++   GD++KV IT+V    L G +V+
Sbjct: 426 DSDIEDLKAGDLVKVEITEVLDYDLVGRVVL 456


>gi|254519172|ref|ZP_05131228.1| conserved hypothetical protein [Clostridium sp. 7_2_43FAA]
 gi|226912921|gb|EEH98122.1| conserved hypothetical protein [Clostridium sp. 7_2_43FAA]
          Length = 445

 Score =  204 bits (518), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 139/449 (30%), Positives = 240/449 (53%), Gaps = 31/449 (6%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N  DS  +     ++ YE  N   +A++I++NTC   E A ++    +  +   
Sbjct: 10  SLGCDKNRVDSELILGTI-NKFYEITNDPKEAEIIIVNTCGFIESAKQESIDTILEMAEY 68

Query: 91  KNS-RIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL-LERARFGKR 148
           KN  + K     +++  GC+AQ  GEE+L   P +++++G   Y +L +L L+  R  ++
Sbjct: 69  KNKYKCK-----MLIATGCLAQRYGEELLELMPEIDILMGVNDYMKLHKLILDFIRGERK 123

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           ++ T+YS E+  E + ++    +     TA++ I EGCD +CT+C++P  RG   SRS  
Sbjct: 124 LLATNYSDENINEGIRLLTTDKH-----TAYVRIAEGCDNYCTYCIIPKIRGKFRSRSKE 178

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK-CTFSDLLYSLSEIKGLVRLRYTT 267
            +++E   L+ NGV EI L+ Q++  +   G+D  K     +L+  +S + G+  +R   
Sbjct: 179 AILEEVETLVKNGVKEIILIAQDLTYY---GMDIYKENKLHELVREISNVTGVEWIRLLY 235

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
            +P ++++ LI+       ++ YL LP+Q  S+ ILK M RR        IID++R   P
Sbjct: 236 CYPEEITEDLIEEMAMNPKVVKYLDLPIQHISNNILKRMARRTNKETITNIIDKLRERIP 295

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
            IA+ +  IVGFPGET++DF    + +++        FKYS   GTP ++M  QV+E  K
Sbjct: 296 GIALRTSLIVGFPGETEEDFNELCEFLEEYKLDNVGVFKYSKEEGTPAADMENQVEEETK 355

Query: 388 A---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVL 440
               E+L+ +QKK+ E+    N   + ++ + +IE  G+     +GRS    P +   +L
Sbjct: 356 EKRQEKLMLVQKKVVEE---LNKLKISKVYDTIIE--GRRGKYFIGRSSEMAPEIDGNIL 410

Query: 441 NSKNHNI--GDIIKVRITDVKISTLYGEL 467
            +   N+  GDI+K++I +     L GE+
Sbjct: 411 VNTTRNLEKGDIVKIKIKEALEYDLVGEI 439


>gi|322382319|ref|ZP_08056226.1| AdoMet radical enzyme-like protein for tRNA modification
           [Paenibacillus larvae subsp. larvae B-3650]
 gi|321153672|gb|EFX46047.1| AdoMet radical enzyme-like protein for tRNA modification
           [Paenibacillus larvae subsp. larvae B-3650]
          Length = 442

 Score =  204 bits (518), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 139/450 (30%), Positives = 240/450 (53%), Gaps = 25/450 (5%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V + GC+ N+ DS  M  +   +G+  V+  ++A +I++NTC   + A E+  + +    
Sbjct: 7   VVTLGCEKNLVDSEIMGGLINERGFSLVDQAEEATVIIVNTCGFIDAAKEESINTI---- 62

Query: 89  NLKNSRIKEGGDL-LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147
            L  + +K+   L  ++V+GC+ Q   EE+++  P ++ +VG   ++++ +++++A  GK
Sbjct: 63  -LDMAELKQTAHLKALIVSGCLTQRYKEELMKELPEIDGIVGTGDFHKINDIIDQALNGK 121

Query: 148 RVV---DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
           + +   +  ++ E    R  I    Y      TA++ I EGCD  CTFC +P  RG   S
Sbjct: 122 KPILVGNPVFNYEAALPR-RITTPRY------TAYVKIAEGCDNNCTFCSIPIMRGKFRS 174

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRL 263
           RS+  ++ E R+L + GV EI+L+ Q+   +   G+D  +     +LL  +S I+G+  +
Sbjct: 175 RSMESILAEVRQLSEQGVKEISLIAQDSTNY---GIDLYDSYVLPELLNKVSAIEGIEWV 231

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R   ++P   +D LI+       +  Y+ LP+Q   D +LK M R     + R++I +IR
Sbjct: 232 RLHYAYPGFFTDELIETIATNPKICKYIDLPLQHSEDSVLKRMRRPGRQKDARELIRKIR 291

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           S  PD A+ +  IVGFPGET++DF++ +D V +I + +   F YS    TP S + +Q+ 
Sbjct: 292 SRIPDAALRTSIIVGFPGETEEDFQSLVDFVKEINFDRLGVFTYSREQDTPASRLPDQIP 351

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQ-SV 438
           ++VK  R   L +  R+     N   +G  I VLIE++       +GRS    P +   V
Sbjct: 352 DDVKEYRANVLMEVQRQISHERNGKRIGMEIPVLIERYDGRNDVFIGRSQFDAPEIDGEV 411

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            +++K   IG I +VRIT      L GE+V
Sbjct: 412 FVSAKRLEIGRIARVRITHSFEFDLSGEVV 441


>gi|42525237|gb|AAS18318.1| CDK5 regulatory subunit associated protein 1 transcript variant 4
           [Homo sapiens]
          Length = 426

 Score =  203 bits (517), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 112/339 (33%), Positives = 195/339 (57%), Gaps = 26/339 (7%)

Query: 17  IVDQCIVPQR-FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREK 75
           ++D+ +  QR  ++++YGCQMNV D+     +    GY R +++ +AD+I+L TC IREK
Sbjct: 91  MMDELLGRQRKVYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCSIREK 150

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135
           A + +++ L +++ LK  R +    L + + GC+A+   EEIL R  +V+++ GP  Y  
Sbjct: 151 AEQTIWNRLHQLKALKTRRPRSRVPLRIGILGCMAERLKEEILNREKMVDILAGPDAYRD 210

Query: 136 LPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
           LP LL  A  G++  +   S+++ +  +  V    +     +AF++I  GCD  C++C+V
Sbjct: 211 LPRLLAVAESGQQAANVLLSLDETYADVMPVQTSAS---ATSAFVSIMRGCDNMCSYCIV 267

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR---------------GKGL 240
           P+TRG E SR ++ +++E +KL + G+ E+TLLGQNVN++R                +G 
Sbjct: 268 PFTRGRERSRPIASILEEVKKLSEQGLKEVTLLGQNVNSFRDNSEVQFNSAVPTNLSRGF 327

Query: 241 DGEKCT------FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP 294
                T      F+ LL  +S +   +R+R+T+ HP+D  D +++   + D +   +HLP
Sbjct: 328 TTNYKTKQGGLRFAHLLDQVSRVDPEMRIRFTSPHPKDFPDEVLQLIHERDNICKQIHLP 387

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIR-SVRPDIAIS 332
            QSGS R+L++M R ++   Y +++  IR S+  D  IS
Sbjct: 388 AQSGSSRVLEAMRRGYSREAYVELVHHIRESIPEDTGIS 426


>gi|225028441|ref|ZP_03717633.1| hypothetical protein EUBHAL_02715 [Eubacterium hallii DSM 3353]
 gi|224954239|gb|EEG35448.1| hypothetical protein EUBHAL_02715 [Eubacterium hallii DSM 3353]
          Length = 465

 Score =  203 bits (516), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 144/465 (30%), Positives = 227/465 (48%), Gaps = 41/465 (8%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC-HIREKAAEKVYSFLGRIRN 89
           S GC  N+ DS +M  +    GY       +AD IV+NTC  I +   E V + L     
Sbjct: 8   SLGCDKNLVDSEKMLGLLNEAGYRVAQEESEADAIVVNTCCFIHDAKEESVETILEMAEW 67

Query: 90  LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149
            K  R+K      ++V GC+AQ   +EI +  P V+ V+G   Y  +  +L+        
Sbjct: 68  KKKGRLK-----ALIVTGCMAQRYQDEIQQEIPEVDAVIGTTGYTEIVPILDEILAEAEA 122

Query: 150 VDTDYSVEDKFER--------LSIVDGGYNRKR-----GVTAFLTIQEGCDKFCTFCVVP 196
              + +VE+  E+        + ++      KR     G TA+L I EGC+K CT+C++P
Sbjct: 123 SQKEAAVEEPKEKSFVNCCPSIDLLPASLADKRVVTTGGYTAYLKIAEGCNKRCTYCIIP 182

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD--GEKCTFSDLLYSL 254
           Y RG   S  +  +++EARKL + GV E+ L+ Q    +   G+D  G K    +LL  L
Sbjct: 183 YIRGHYRSFPMEDLLEEARKLAEGGVKELILIAQETTVY---GMDCYGRK-ALPELLTKL 238

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
            EI+G+  +R    +P +++D LI        +  YL +P+Q   D ILK M RR    E
Sbjct: 239 CEIEGIEWIRILYCYPEEITDELIAVMKKEKKICHYLDIPIQHSEDTILKRMGRRTNRAE 298

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
              +++++R   PDI + +  I GFPGET+++F+  +D VD + + +   F YS   GT 
Sbjct: 299 LVSLVEKLRKEIPDIVLRTTLITGFPGETEEEFKNMVDFVDSMEFDRLGVFPYSAEEGTK 358

Query: 375 GSNMLEQVDENVKAER---LLCLQKKLREQQVSFNDAC--VGQIIEVLIEKHGKEKGKLV 429
            + M  Q+ E VK  R   ++ LQ     Q++S + A   +   + VLIE +  E    +
Sbjct: 359 AAEMDGQITEEVKESRRDEIMALQ-----QEISADKAASRIDDEMSVLIEGYLYEDDIYI 413

Query: 430 GRS----PWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468
           GR+    P +   V       +  GDI+ VRIT      L G+++
Sbjct: 414 GRTYMDAPKVDGNVFVRAEEELISGDIVPVRITGANEYDLMGDVI 458


>gi|17228717|ref|NP_485265.1| hypothetical protein alr1222 [Nostoc sp. PCC 7120]
 gi|81853061|sp|Q8YXJ1|RIMO_NOSS1 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|17130569|dbj|BAB73179.1| alr1222 [Nostoc sp. PCC 7120]
          Length = 440

 Score =  203 bits (516), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 141/452 (31%), Positives = 223/452 (49%), Gaps = 35/452 (7%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           +   GC+ N  D+  M  +    GY    + + AD +++NTC   E A E+    L  + 
Sbjct: 9   ISHLGCEKNRIDTEHMLGLLVKAGYGVDTNEELADYVIVNTCSFIESAREESVRTLVELA 68

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
                         +V+ GC+AQ    ++L   P    VVG   Y+++  ++ERA  G+R
Sbjct: 69  EANKK---------IVITGCMAQHFQTQLLEELPEAVAVVGTGDYHKIVSVIERAEQGER 119

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVT---AFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           V  T  S E  +    I D    R R  T   A+L + EGCD  C FC++P+ RG + SR
Sbjct: 120 V--TLVSAEPTY----IADETTPRYRTTTEGVAYLRVAEGCDYRCAFCIIPHLRGNQRSR 173

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIK-GLVRL 263
           ++  +V EA +L+  GV EI L+ Q    +   GLD   K   ++LL +L +I    +R+
Sbjct: 174 TIESIVAEAEQLVAQGVQEIILISQITTNY---GLDIYGKPKLAELLRALGKINVPWIRM 230

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
            Y  ++P  ++  +I A  +   ++PYL LP+Q     +L+SMNR        +II+R++
Sbjct: 231 HY--AYPTGLTPDVIAAIQETPNVLPYLDLPLQHSHSEVLRSMNRPWQGRVNDEIIERLK 288

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              P   + + FIVGFPGET+  F   +  V +  +     F +S   GTP   +  Q+ 
Sbjct: 289 IAIPGAVLRTTFIVGFPGETEAQFEHLLQFVQRHEFDHVGVFTFSAEEGTPAYKLPNQLP 348

Query: 384 ENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQ 436
           + V  E   RL+ LQ+ +  ++   N   VG+ +EVLIE+   E GKL+GR    SP + 
Sbjct: 349 QEVMDERRDRLMALQQPISWRK---NQQEVGKTVEVLIEQENPESGKLIGRSGRFSPEVD 405

Query: 437 SVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
             V       +G II V+I       L+G++V
Sbjct: 406 GQVYVDGEAKLGTIIPVKIHSADEYDLFGQVV 437


>gi|22299107|ref|NP_682354.1| hypothetical protein tlr1564 [Thermosynechococcus elongatus BP-1]
 gi|81844879|sp|Q8DIL8|RIMO_THEEB RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|22295289|dbj|BAC09116.1| tlr1564 [Thermosynechococcus elongatus BP-1]
          Length = 446

 Score =  202 bits (514), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 138/446 (30%), Positives = 215/446 (48%), Gaps = 37/446 (8%)

Query: 33  GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92
           GC  N  D+  M  +  + GY       +AD +++NTC   + A E+    L  +     
Sbjct: 15  GCDKNRVDTEHMIGLLAAAGYGVGTDETEADYVIVNTCSFIQAAREESVRTLVELAEANK 74

Query: 93  SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVD- 151
                     +V+ GC+AQ    E+L   P    VVG   Y  + E++ER   G+RV   
Sbjct: 75  K---------IVITGCLAQHFQGELLAELPEAVAVVGSGDYQHIVEVIERVERGERVQQI 125

Query: 152 ---TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
                Y  ++   R       Y       A+L I EGCD  C FC++P+ RG + SRSL 
Sbjct: 126 SAVPTYIADETVPR-------YRTTPAPVAYLRIAEGCDYRCAFCIIPHLRGNQRSRSLE 178

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE-KCTFSDLLYSLSEIK-GLVRLRYT 266
            +V EA +L   GV EI ++ Q    +   GLD   +   + L+ +L E+    +RL Y 
Sbjct: 179 SIVSEAHQLAAEGVQEIIIVSQITTNY---GLDRYGQPQLATLIRALGEVDVPWIRLHY- 234

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
            ++P  ++  +I A  +   ++PYL LP+Q     +L++MNR   A    ++I+R+R   
Sbjct: 235 -AYPTGLTPEVIAAMRETPNILPYLDLPLQHSHPEVLRAMNRPWQAGVNDRLIERLRQEL 293

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           P+  + + FIVGFPGET+  F      V +  +     F YSP  GT   ++  Q+ E +
Sbjct: 294 PEAVVRTTFIVGFPGETESQFEHLCQFVQRHEFDHVGVFTYSPEEGTAAYDLPHQIPEEI 353

Query: 387 K---AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQS----VV 439
           K    +RL+ LQ+ + +++   N A VG+I+ VLIE+   + G+ +GRSP        VV
Sbjct: 354 KRARRDRLMELQQPIAQRK---NAAEVGKIVPVLIEQENPQTGEFIGRSPRFAPEVDGVV 410

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYG 465
                  +G I+ V IT   I  LYG
Sbjct: 411 YVKGAATLGTIVPVEITAADIYDLYG 436


>gi|291539696|emb|CBL12807.1| MiaB-like tRNA modifying enzyme [Roseburia intestinalis XB6B4]
          Length = 435

 Score =  202 bits (514), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 129/396 (32%), Positives = 218/396 (55%), Gaps = 29/396 (7%)

Query: 33  GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92
           GC++N Y++  M+ +  + GYE V   + AD+ V+NTC +   A  K      R + +  
Sbjct: 10  GCKVNAYETEAMQQILENAGYEIVPFTEIADVYVINTCSVTNMADRKSRQMFHRAKKM-- 67

Query: 93  SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL---ERARFGK-R 148
                  D +VV AGC  Q +  + L    I ++V+G    + L  LL   E+    + +
Sbjct: 68  -----NPDAIVVGAGCYVQTKEAQALVDESI-DIVIGNNQKHELVTLLNEYEKEHTKQAQ 121

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           +VD ++  ++ +E L +     + +    AF+ +Q+GC++FC++C++P+ RG   SR + 
Sbjct: 122 IVDINHEKQE-YEELHLKKTAEHTR----AFIKVQDGCNQFCSYCIIPFARGRVRSRKME 176

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYTT 267
            V++E  +L  +G  E+ L G +++++   G+D GE  T   L+  + EI+G+ R+R  +
Sbjct: 177 DVLNEINELAKSGYKEVVLTGIHLSSY---GVDTGE--TLLSLIEHVHEIEGIERIRLGS 231

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
             PR +++   K   +L  + P+ HL +QSG D +LK MNRR+   EY    D +R    
Sbjct: 232 LEPRIVTEDFAKRLSELTKICPHFHLSLQSGCDSVLKRMNRRYDTAEYEAGCDLLRKYFT 291

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
             AI++D IVGFPGET+++F+ T + + KI + +   FKYS R GT  + M +QV E  K
Sbjct: 292 HPAITTDVIVGFPGETEEEFKITEEYLKKIHFYEMHIFKYSVREGTKAAVMPDQVSEQKK 351

Query: 388 AER---LLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
            ER   LL L+KK+ E+   F +  VG+    L+E+
Sbjct: 352 TERSNILLSLEKKMSEE---FRNYYVGKEKTALLEE 384


>gi|260891278|ref|ZP_05902541.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Leptotrichia hofstadii
           F0254]
 gi|260858954|gb|EEX73454.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Leptotrichia hofstadii
           F0254]
          Length = 306

 Score =  202 bits (514), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 106/299 (35%), Positives = 178/299 (59%), Gaps = 8/299 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +R  + +YGCQMNV +S +M+ M  + GY+    +++ DL+ LNTC +RE AA KVY  L
Sbjct: 3   KRATIITYGCQMNVNESAKMKQMLQTMGYQMTEDIENTDLVFLNTCTVREGAAVKVYGKL 62

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           G ++ +K  +    G +++ V GC+AQ   +E ++++P V++V+G Q   R+P++LER  
Sbjct: 63  GDLKRIKEEK---DGKMIIGVTGCLAQEVRDEFIKKTPYVDLVLGNQNIGRIPDILERIE 119

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G+        V+D+ E  + VD  +     + A ++I  GC+ +CTFC+VPY RG+E S
Sbjct: 120 SGEET--HIVMVDDEDELPTRVDADFGDD--IVASISITYGCNNYCTFCIVPYVRGMERS 175

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
             L+++V +  +    G  EI  LGQNVN++     +G+   F++LL   + ++G   ++
Sbjct: 176 VPLNEIVSDVEQYTKKGYKEILFLGQNVNSYGSDFANGQD-NFAELLEESANVEGDFWIK 234

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           Y + HP+D SD +I        +   LHLP+QSGS +IL +MNR +T  E+  +  ++R
Sbjct: 235 YVSPHPKDFSDEVIDTIARNPKIARMLHLPLQSGSTKILDAMNRGYTKEEFIALAKKLR 293


>gi|255659775|ref|ZP_05405184.1| RNA modification enzyme, MiaB family [Mitsuokella multacida DSM
           20544]
 gi|260847845|gb|EEX67852.1| RNA modification enzyme, MiaB family [Mitsuokella multacida DSM
           20544]
          Length = 455

 Score =  202 bits (514), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 141/438 (32%), Positives = 222/438 (50%), Gaps = 29/438 (6%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ D+  M  +    G E   +  +AD++++NTC   + A E+  + +     L
Sbjct: 7   SLGCSKNLVDTEVMLGILKQHGIELTANPAEADILIVNTCAFIQSAKEESITTI-----L 61

Query: 91  KNSRIKEGGDLL-VVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149
             +  KE G    ++VAGC+ Q   +E+L   P  + ++G   + R+ E +E    G RV
Sbjct: 62  NMAEYKESGRCRSLIVAGCLGQRYKQELLDEIPEADAIIGTGAWGRIMEAVEETLKGHRV 121

Query: 150 V--DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
           V    D ++ D+          Y      TA++ I EGC+  C FC +PY RG   SR +
Sbjct: 122 VIAGKDEALYDENTPRITTTPSY------TAYVKIAEGCNNRCAFCAIPYIRGDYRSRRI 175

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
             + DE R L +NGV E+ L+ Q+   + G+ L G     S+LL  + ++  L  +R   
Sbjct: 176 EDICDEVRHLTENGVREVVLIAQDSTEY-GRDLYGAP-KLSELLREIVKVPKLQWVRTLY 233

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
           S+P+  SD LI+       +  Y+ LP+Q   D +L+SM R  T  E R +I ++R   P
Sbjct: 234 SYPKYFSDELIETIASEPKICKYVDLPLQHAHDAVLRSMRRPDTQEEMRALIKKLRERIP 293

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
            + I S FIVGFPGETD  +    + ++++   +   F YS   GTP  +M  QV E + 
Sbjct: 294 GVTIRSTFIVGFPGETDAQYHTLRNFIEEMRLDKVGVFTYSREEGTPAYDMPNQVPEEIM 353

Query: 388 AER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL-VGRS----PWL--QS 437
            ER   L+ LQ K+ EQ    N +  G+ ++VL+E   +E+  + VGRS    P +  Q 
Sbjct: 354 QERYHDLMSLQCKISEQ---INQSLEGKELDVLVEGRDEEQPNISVGRSYREAPEVDGQV 410

Query: 438 VVLNSKNHNIGDIIKVRI 455
            V N  +   GDI++VR+
Sbjct: 411 YVENDTDSKPGDIVRVRV 428


>gi|167630503|ref|YP_001681002.1| miab-like tRNA modifying enzyme [Heliobacterium modesticaldum Ice1]
 gi|167593243|gb|ABZ84991.1| miab-like tRNA modifying enzyme [Heliobacterium modesticaldum Ice1]
          Length = 446

 Score =  202 bits (513), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 133/391 (34%), Positives = 205/391 (52%), Gaps = 15/391 (3%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N  ++  +  MF ++GY  V     AD+ V+NTC +   +  K    + R  N 
Sbjct: 12  TLGCKVNQGETDAIAGMFKARGYAIVPFDAPADVYVVNTCTVTHLSDRKSRQAI-RKANR 70

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
           +N       D +VVV GC AQ   +E+ +    V++VVG      + +L+E  R     V
Sbjct: 71  QNP------DAVVVVTGCYAQTAADEV-QAIEGVDIVVGTDRRSAIVDLVEEHRRSGETV 123

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
           +T Y    + ER   +     R R   A + IQ+GCD +CT+C++PY RG   SR +  V
Sbjct: 124 NTVYD-SCRIERFEELPAAPERSRA-RATIKIQDGCDLYCTYCIIPYARGPVRSRRIESV 181

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270
           V+EA +L   G  EI L G ++ A+ G   + +    + L+  L  I GL R+R  +  P
Sbjct: 182 VEEATRLTGEGFKEIVLSGIHLGAY-GSDFNAD---LAKLIVELCRIPGLRRIRVGSVEP 237

Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330
           ++ +  L++A     V  P+ H+P+QSGSD +L+ M RR+   ++  +  +I+ + P +A
Sbjct: 238 QEFTPELLEAVVHPRVC-PHFHIPLQSGSDAVLERMGRRYRRQDFLDVTRKIQQMIPGVA 296

Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER 390
           I+SD IVGFPGE + D+  + +L    G A    F YSPR GTP +   +Q+   VK ER
Sbjct: 297 ITSDVIVGFPGEREADYLLSEELCRATGLAGLHVFPYSPRRGTPAATFPDQIPSAVKQER 356

Query: 391 LLCLQKKLREQQVSFNDACVGQIIEVLIEKH 421
              L K  RE    +    VGQI EVL E+ 
Sbjct: 357 AQRLAKLARELASDYAKGFVGQIREVLAEEQ 387


>gi|164688504|ref|ZP_02212532.1| hypothetical protein CLOBAR_02149 [Clostridium bartlettii DSM
           16795]
 gi|164602917|gb|EDQ96382.1| hypothetical protein CLOBAR_02149 [Clostridium bartlettii DSM
           16795]
          Length = 445

 Score =  202 bits (513), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 130/446 (29%), Positives = 236/446 (52%), Gaps = 31/446 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +  ++S GC  N+ D+  M  +   +GY+   + ++AD+I++NTC   E A ++    + 
Sbjct: 3   KIALESLGCSKNLVDAEIMMGILNEKGYKLTGNFEEADVILVNTCGFIESAKQESIQTI- 61

Query: 86  RIRNLKNSRIKEGGDL-LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
               L+ + +KE  +L L++V GC+AQ   +E+    P ++ +VG  +Y  + E+L    
Sbjct: 62  ----LEFAELKETANLKLLIVTGCLAQRYADELKEEIPEIDAIVGTGSYQNIDEILAELS 117

Query: 145 FGKRVV---DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
              ++V   + +++ ++   R       Y       A+L I EGCD  CT+C++P  RG 
Sbjct: 118 EKHQIVSLNNIEFAYDENLPR-------YVSTPSHMAYLKIGEGCDNKCTYCIIPKLRGK 170

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
             SR +  ++ EA+KL + GV E+ ++ Q+   + G  L GE+   ++LL  L++I+G  
Sbjct: 171 YRSRKMEDIIAEAKKLAERGVKELVVIAQDTTKY-GLDLYGEE-KLANLLEELAQIEGFK 228

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
            +R   S+P  +++ L+K     D +  Y  +P+Q  S+R+LK MNR+ T  +    I+ 
Sbjct: 229 WIRVMYSYPESITEELVKVIKKYDNICNYFDMPIQHASNRVLKLMNRKTTKEDILSKINM 288

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           IRS   D  + +  IVGFPGET++DF    + + +  + +   F YS    TP   +   
Sbjct: 289 IRSHISDATLRTSIIVGFPGETEEDFNELAEFIKEAQFDKLGVFTYSREEDTPADKLPNH 348

Query: 382 VDENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPW---- 434
           ++E VK ER   L+ +Q+ + E++   N+  +G   EVL+E+   E    VGR+ +    
Sbjct: 349 LEEEVKVERQEALMMIQQGISEEK---NNNKIGNKYEVLVEEQ-IEDNVYVGRTIYDAEE 404

Query: 435 LQSVVL--NSKNHNIGDIIKVRITDV 458
           + ++V   + +N  +G+ + V ITD 
Sbjct: 405 IDAIVYVKSIRNLQVGEFVNVVITDA 430


>gi|330903345|gb|EGH33917.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Pseudomonas
           syringae pv. japonica str. M301072PT]
          Length = 169

 Score =  202 bits (513), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 92/169 (54%), Positives = 123/169 (72%)

Query: 175 GVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA 234
           G +A++++ EGC K+CTFCVVPYTRG E+SR    V+ E   L +NGV E+TLLGQNVN 
Sbjct: 1   GPSAYVSVMEGCSKYCTFCVVPYTRGEEVSRPFDDVLSEVIHLAENGVREVTLLGQNVNG 60

Query: 235 WRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP 294
           +RG   DG     +DL+  ++ + G+ R+RYTTSHP + SD LI+AH ++  L+ +LHLP
Sbjct: 61  YRGTTHDGRVADLADLIRVVAAVDGIDRIRYTTSHPLEFSDSLIQAHAEVPELVKHLHLP 120

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGET 343
           VQSGSDRIL +M R HT  EY+  + ++R+  P I+ISSDFIVGFPGET
Sbjct: 121 VQSGSDRILAAMKRNHTTLEYKSRLRKLRAAVPGISISSDFIVGFPGET 169


>gi|238924259|ref|YP_002937775.1| MiaB-like tRNA modifying enzyme [Eubacterium rectale ATCC 33656]
 gi|238875934|gb|ACR75641.1| MiaB-like tRNA modifying enzyme [Eubacterium rectale ATCC 33656]
          Length = 434

 Score =  202 bits (513), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 128/395 (32%), Positives = 208/395 (52%), Gaps = 26/395 (6%)

Query: 33  GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92
           GC++N Y++  M+ +    GYE V     AD+ V+NTC +   A  K    L + +    
Sbjct: 10  GCKVNAYETEAMQHLLEEAGYEIVPFTQKADVYVINTCSVTNMADRKSRQMLHKAK---- 65

Query: 93  SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDT 152
              K   D +VV AGC  Q   +E+L     V++V+G    + L  LLE       V DT
Sbjct: 66  ---KNNPDSIVVAAGCYVQTSEKEVLNDLS-VDIVIGNDRKHDLVRLLEEYSLDS-VNDT 120

Query: 153 DYSVED---KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209
              + D    FE L I       K    AF+ +Q+GC++FC++C++PY RG   SR    
Sbjct: 121 VDDINDGKHDFEELFID----QTKEHTRAFIKVQDGCNQFCSYCIIPYARGRVRSRRFEN 176

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT-FSDLLYSLSEIKGLVRLRYTTS 268
           V+ E  +L  NG  E+ L G +++++   G+D E+     +L+ +++ +KG+ R+R  + 
Sbjct: 177 VIAEVERLAANGFKEVVLTGIHLSSY---GVDFEEAVGLLELIQAVNAVKGIERIRLGSL 233

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
            P+ +++        LD + P+ HL +QSG D  LK MNR++T  EY +  + +R     
Sbjct: 234 EPKIVTEHFASELSKLDKICPHFHLSLQSGCDATLKRMNRKYTTKEYERGCELLRKYFVH 293

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
            AI++D IVGFPGET+++F  T   ++ I + +   FKYS R GT  + M +Q+DE +KA
Sbjct: 294 PAITTDVIVGFPGETEEEFEQTKAYLEHIHFYEMHIFKYSKRKGTRAAVMPDQIDEQIKA 353

Query: 389 ---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
              E+L+ L   + ++   F    +G+  E L E+
Sbjct: 354 ARSEKLIALGHDMSKE---FRKFYIGKNEEALFEE 385


>gi|167037606|ref|YP_001665184.1| MiaB-like tRNA modifying protein YliG [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|320116021|ref|YP_004186180.1| MiaB-like tRNA modifying enzyme YliG [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
 gi|326389420|ref|ZP_08210987.1| MiaB-like tRNA modifying enzyme YliG [Thermoanaerobacter
           ethanolicus JW 200]
 gi|238064962|sp|B0K9N5|RIMO_THEP3 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|166856440|gb|ABY94848.1| MiaB-like tRNA modifying enzyme YliG [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|319929112|gb|ADV79797.1| MiaB-like tRNA modifying enzyme YliG [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
 gi|325994425|gb|EGD52850.1| MiaB-like tRNA modifying enzyme YliG [Thermoanaerobacter
           ethanolicus JW 200]
          Length = 436

 Score =  202 bits (513), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 132/446 (29%), Positives = 230/446 (51%), Gaps = 28/446 (6%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N  DS +M  +   +GY  VN  + AD++++NTC   E A  +   ++  +  L
Sbjct: 8   SLGCPKNTVDSEKMLAILKEKGYNIVNDKNKADILIINTCGFIEDAKRESIEYIIEMGKL 67

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
           KN R+K      ++  GC+++   +E+L+  P ++ V+G   + ++ E++E    GK V+
Sbjct: 68  KNRRLK-----YLIATGCLSERYNKELLKELPELDAVIGTGDFPKIAEVIEEIEKGKTVL 122

Query: 151 DTDYSV---EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
           +  ++    ++  +R+      Y       A+L I EGC   C+FC++P  RG   SR +
Sbjct: 123 EYGHANLLNDEGIQRILTTPNYY-------AYLKIAEGCSNACSFCIIPKIRGRYRSRKM 175

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYT 266
             ++ EA +L+  G  E+ L+ Q+   +   G+D  +K     LL  +S+I GL  +R  
Sbjct: 176 EDILREAEELVKKGAKELILIAQDTTKY---GVDVYKKFMLPQLLKEISKIDGLKWIRLL 232

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
            ++P  +++ L++   + + ++ Y+ +P+Q   D +LK MNR     +  ++I R+RS+ 
Sbjct: 233 YAYPDSVTEELVEEIKNNEKIVKYIDIPLQHSHDEVLKRMNRNTNRQKIEEVISRLRSI- 291

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           P++ I + F+VGFPGET+++F      + +  + +   F YS   GT    M  Q+ ++V
Sbjct: 292 PNMVIRTTFMVGFPGETEEEFEDLKQFIKEKRFERVGVFTYSREEGTKSYYMKPQIKKSV 351

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVLNS 442
           K +R   L +  +E     N + VG+ +EVLIE  G E G   GRS    P +  VV   
Sbjct: 352 KIKRQQELMEIQKEISYQHNLSKVGKQLEVLIE--GFEDGIYYGRSYMDAPEIDGVVYVK 409

Query: 443 KNHNI--GDIIKVRITDVKISTLYGE 466
            N  +  GD +   ITD     L GE
Sbjct: 410 SNKKLKAGDFVVATITDAYEYDLVGE 435


>gi|291535169|emb|CBL08281.1| MiaB-like tRNA modifying enzyme [Roseburia intestinalis M50/1]
          Length = 435

 Score =  201 bits (512), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 129/396 (32%), Positives = 218/396 (55%), Gaps = 29/396 (7%)

Query: 33  GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92
           GC++N Y++  M+ +  + GYE V   + AD+ V+NTC +   A  K      R + +  
Sbjct: 10  GCKVNAYETEAMQQILENAGYEIVPFTEIADVYVINTCSVTNMADRKSRQMFHRAKKM-- 67

Query: 93  SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL---ERARFGK-R 148
                  D +VV AGC  Q +  + L    I ++V+G    + L  LL   E+    + +
Sbjct: 68  -----NPDAIVVGAGCYVQTKEAQALVDESI-DIVIGNNQKHELVTLLNEYEKEHTKQAQ 121

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           +VD ++  ++ +E L +     + +    AF+ +Q+GC++FC++C++P+ RG   SR + 
Sbjct: 122 IVDINHEKQE-YEELHLKKTAEHTR----AFIKVQDGCNQFCSYCIIPFARGRVRSRKME 176

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYTT 267
            V++E + L  +G  E+ L G +++++   G+D GE  T   L+  + EI+G+ R+R  +
Sbjct: 177 DVLNEIKGLAKSGYKEVVLTGIHLSSY---GVDTGE--TLLSLIEHVHEIEGIERIRLGS 231

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
             PR +++   K   +L  + P+ HL +QSG D +LK MNRR+   EY    D +R    
Sbjct: 232 LEPRIVTEDFAKRLSELTKICPHFHLSLQSGCDSVLKRMNRRYDTAEYEAGCDLLRKYFT 291

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
             AI++D IVGFPGET+++F+ T + + KI + +   FKYS R GT  + M +QV E  K
Sbjct: 292 HPAITTDVIVGFPGETEEEFKITEEYLKKIHFYEMHIFKYSVREGTKAAVMPDQVPEQKK 351

Query: 388 AER---LLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
            ER   LL L+KK+ E+   F +  VG+    L+E+
Sbjct: 352 TERSNILLSLEKKMSEE---FRNYYVGKEKTALLEE 384


>gi|300024819|ref|YP_003757430.1| MiaB-like tRNA modifying enzyme [Hyphomicrobium denitrificans ATCC
           51888]
 gi|299526640|gb|ADJ25109.1| MiaB-like tRNA modifying enzyme [Hyphomicrobium denitrificans ATCC
           51888]
          Length = 419

 Score =  201 bits (512), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 142/446 (31%), Positives = 224/446 (50%), Gaps = 41/446 (9%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V + GC++N Y+S  M       G      +DDA  I++NTC +  +A  +    + R+R
Sbjct: 6   VITLGCRLNAYESEVMRRHAQDAG------LDDA--IIVNTCAVTGEAVRQASQTIRRLR 57

Query: 89  NLK-NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG------PQTYYRLPELLE 141
             K N+RI        +V GC AQ E +      P V+ VVG       +T+  L  +  
Sbjct: 58  RDKPNARI--------IVTGCAAQTEAQRFAD-MPEVDHVVGNGEKMLAETFAGL-SIAS 107

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
            AR     V+   +V ++   +  ++G  +R R   A++ IQ GCD  CTFC++P+ RG 
Sbjct: 108 SARVQ---VNDIMAVREQASHM--IEGFGSRTR---AYVAIQNGCDHRCTFCIIPFGRGP 159

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
             S    +VV + R+L+ NG  EI L G ++ ++ G+ L G       +   L  +  L 
Sbjct: 160 SRSVPAGEVVTQVRRLVANGYAEIVLTGVDITSY-GRDLPGVATLGKLVRQVLKHVPDLA 218

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           RLR ++    +  + L+ A G+ + LMP+LHL +Q+G D  LK M RRH+  +     +R
Sbjct: 219 RLRLSSIDQVEADEDLMIALGEEERLMPHLHLSMQAGDDMTLKRMKRRHSRADAIMFCER 278

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
            R++RPD+   +D I GFP ETD  F  ++ +VD+ G      F +SPR GTP + M  Q
Sbjct: 279 ARTLRPDVVFGADLIAGFPTETDAMFENSLKIVDECGLTYLHVFPFSPRRGTPAARM-PQ 337

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           V  N+  ER   L+ + +    S+  A  G+ ++VL+E  G      +GR+P    V + 
Sbjct: 338 VPGNIVKERAAELRARGQAVLTSYLAAQQGRTVDVLLESDG------MGRTPQFAEVDMR 391

Query: 442 SKNHNIGDIIKVRITDVKISTLYGEL 467
           S     G+I+   IT    + L GE+
Sbjct: 392 SSGAKAGEIVHAVITGASSTRLIGEV 417


>gi|75906864|ref|YP_321160.1| hypothetical protein Ava_0641 [Anabaena variabilis ATCC 29413]
 gi|123758912|sp|Q3MFH1|RIMO_ANAVT RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|75700589|gb|ABA20265.1| SSU ribosomal protein S12P methylthiotransferase [Anabaena
           variabilis ATCC 29413]
          Length = 440

 Score =  201 bits (512), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 143/452 (31%), Positives = 226/452 (50%), Gaps = 35/452 (7%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           +   GC+ N  D+  M  +    GY    + + AD +++NTC   E A E+    L  + 
Sbjct: 9   ISHLGCEKNRIDTEHMLGLLVKAGYGVDTNEELADYVIVNTCSFIESAREESVKTLVELA 68

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
              N +I        V+ GC+AQ    ++L   P    VVG   Y+++  ++ERA  G+R
Sbjct: 69  E-ANKKI--------VITGCMAQHFQTQLLEELPEAVAVVGTGDYHKIVNVIERAEQGER 119

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVT---AFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           V  T  S +  +    I D    R R  T   A+L + EGCD  C FC++P+ RG + SR
Sbjct: 120 V--TLVSAKPTY----IADETTPRYRTTTEGVAYLRVAEGCDYRCAFCIIPHLRGNQRSR 173

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIK-GLVRL 263
           ++  +V EA +L+  GV EI L+ Q    +   GLD   K   ++LL +L +I    +R+
Sbjct: 174 TIESIVAEAEQLVAQGVQEIILISQITTNY---GLDIYGKPKLAELLRALGKINVPWIRM 230

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
            Y  ++P  ++  +I A  +   ++PYL LP+Q     +L+SMNR        +II+R++
Sbjct: 231 HY--AYPTGLTPDVIAAIQETPNVLPYLDLPLQHSHSEVLRSMNRPWQGRVNDEIIERLK 288

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG---SNMLE 380
              P   + + FIVGFPGET+  F   +  V +  +     F +S   GTP    SN L 
Sbjct: 289 IAIPGAVLRTTFIVGFPGETEAQFEHLLQFVQRHEFDHVGVFTFSAEEGTPAYKLSNQLP 348

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQ 436
           Q   + + +RL+ LQ+ +  ++   N   VG+ +EVLIE+   E GKL+GR    SP + 
Sbjct: 349 QEVMDERRDRLMALQQPISWRK---NQQEVGKTVEVLIEQENPESGKLIGRSGRFSPEVD 405

Query: 437 SVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
             V       +G II V+I       L+G++V
Sbjct: 406 GQVYVDGEAKLGTIIPVKIHSADEYDLFGQVV 437


>gi|240145918|ref|ZP_04744519.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Roseburia intestinalis
           L1-82]
 gi|257201983|gb|EEV00268.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Roseburia intestinalis
           L1-82]
          Length = 435

 Score =  201 bits (512), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 129/396 (32%), Positives = 218/396 (55%), Gaps = 29/396 (7%)

Query: 33  GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92
           GC++N Y++  M+ +  + GYE V   + AD+ V+NTC +   A  K      R + +  
Sbjct: 10  GCKVNAYETEAMQQILENAGYEIVPFTEIADVYVINTCSVTNMADRKSRQMFHRAKKM-- 67

Query: 93  SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL---ERARFGK-R 148
                  D +VV AGC  Q +  + L    I ++V+G    + L  LL   E+    + +
Sbjct: 68  -----NPDAIVVGAGCYVQTKEAQALVDESI-DIVIGNNQKHELVTLLNEYEKEHTKQAQ 121

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           +VD ++  ++ +E L +     + +    AF+ +Q+GC++FC++C++P+ RG   SR + 
Sbjct: 122 IVDINHEKQE-YEELHLKKTAEHTR----AFIKVQDGCNQFCSYCIIPFARGRVRSRKME 176

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYTT 267
            V++E + L  +G  E+ L G +++++   G+D GE  T   L+  + EI+G+ R+R  +
Sbjct: 177 DVLNEIKGLAKSGYKEVVLTGIHLSSY---GVDTGE--TLLSLIEHVHEIEGIERIRLGS 231

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
             PR +++   K   +L  + P+ HL +QSG D +LK MNRR+   EY    D +R    
Sbjct: 232 LEPRIVTEDFAKRLSELTKICPHFHLSLQSGCDSVLKRMNRRYDTAEYEAGCDLLRKYFT 291

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
             AI++D IVGFPGET+++F+ T + + KI + +   FKYS R GT  + M +QV E  K
Sbjct: 292 HPAITTDVIVGFPGETEEEFKITEEYLKKIHFYEMHIFKYSMREGTKAAVMPDQVPEQKK 351

Query: 388 AER---LLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
            ER   LL L+KK+ E+   F +  VG+    L+E+
Sbjct: 352 TERSNILLSLEKKMSEE---FRNYYVGKEKTALLEE 384


>gi|312136430|ref|YP_004003767.1| RNA modification enzyme, miab family [Methanothermus fervidus DSM
           2088]
 gi|311224149|gb|ADP77005.1| RNA modification enzyme, MiaB family [Methanothermus fervidus DSM
           2088]
          Length = 427

 Score =  201 bits (512), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 138/453 (30%), Positives = 249/453 (54%), Gaps = 40/453 (8%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + ++++YGC  N  DS  +  +   +  + V+S+D+AD+I+LNTC++++    K+   + 
Sbjct: 2   KVYIETYGCTYNKADSQIIAGILEKENIKVVDSIDEADVIILNTCYVKQPTEHKI---IN 58

Query: 86  RIRNLKNS-RIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           RIR L+N+ + KE     ++VAGC+ + + E++ + +P  +  +GP   ++ PE+++   
Sbjct: 59  RIRELQNTYKSKE-----LIVAGCMVEIDPEKLKKIAP-ESAWLGPHKLHKAPEVVKSVI 112

Query: 145 FG--KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            G  K+V   D  ++        V+    R       + I EGC   C++C   + RG  
Sbjct: 113 NGNKKKVYGKDSKIK--------VEMPKKRFNSHIHIVQICEGCLGNCSYCCTRFARGRL 164

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            S  L  +V + +K I++G  EI L  Q+  A+ G+ +    C    L+  ++ + G  +
Sbjct: 165 YSYPLDSIVKDVKKAIEDGCVEIQLTAQDTAAY-GRDIG---CDLPTLINKITSLDGKFK 220

Query: 263 LRYTTSHPRDMS---DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           +R    HP+++    D L+ A+ D + +  +LHLPVQSGSD++L+ MNR +   ++++I+
Sbjct: 221 IRVGMMHPKNVKKILDELVDAY-DSEKIYKFLHLPVQSGSDKVLRDMNRGYKVKDFKKIV 279

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            + R   P+I+I++D IVGFP E+ +DF+ T +L+++I      S +Y+ R G   S  L
Sbjct: 280 RKFRKKIPEISIATDIIVGFPTESREDFKKTCELLNEIKPNFIHSSRYAHRPGAKSSK-L 338

Query: 380 EQVDENVKAERLLCLQ----KKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWL 435
           +++D N   ER   ++    K +RE+    N   VG   +VLI + GK KG  +GR+   
Sbjct: 339 DELDHNEVKERSRIIEEIKNKIMREE----NKKLVGTEQKVLIVEKGK-KGGYIGRTSSY 393

Query: 436 QSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
             V++NS     G+IIKV+I +   + L G+ V
Sbjct: 394 IPVIVNSGKP--GEIIKVKIKEATSTYLKGDAV 424


>gi|307264932|ref|ZP_07546494.1| MiaB-like tRNA modifying enzyme YliG [Thermoanaerobacter wiegelii
           Rt8.B1]
 gi|306920190|gb|EFN50402.1| MiaB-like tRNA modifying enzyme YliG [Thermoanaerobacter wiegelii
           Rt8.B1]
          Length = 436

 Score =  201 bits (512), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 132/446 (29%), Positives = 229/446 (51%), Gaps = 28/446 (6%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N  DS +M  +   +GY  VN  + AD++++NTC   E A  +   ++  +  L
Sbjct: 8   SLGCPKNTVDSEKMLAILKEKGYNIVNDKNKADILIINTCGFIEDAKRESIEYIIEMGKL 67

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
           KN R+K      ++  GC+++   +E+L+  P ++ V+G   + ++ E++E    GK V+
Sbjct: 68  KNRRLK-----YLIATGCLSERYNKELLKELPELDAVIGTGDFPKIAEVIEEIEKGKTVL 122

Query: 151 DTDYSV---EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
           +  ++    ++  +R+      Y        +L I EGC   C+FC++P  RG   SR +
Sbjct: 123 EYGHANLLNDEGIQRILTTPNYY-------TYLKIAEGCSNACSFCIIPKIRGRYRSRKM 175

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYT 266
             ++ EA +L+  G  E+ L+ Q+   +   G+D  +K     LL  +S+I GL  +R  
Sbjct: 176 EDILREAEELVKKGAKELILIAQDTTKY---GVDVYKKFMLPQLLKEISKIDGLKWIRLL 232

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
            ++P  +++ L++   + + ++ Y+ +P+Q   D +LK MNR     +  ++I R+RS+ 
Sbjct: 233 YAYPDSVTEELVEEIKNNEKIVKYIDIPLQHSHDEVLKRMNRNTNRQKIEEVISRLRSI- 291

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           P++ I + F+VGFPGET+++F      V +  + +   F YS   GT    M  Q+ +NV
Sbjct: 292 PNMVIRTTFMVGFPGETEEEFEDLKQFVKEKRFERVGVFTYSREEGTKSYYMKPQIKKNV 351

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVL-- 440
           K +R   L +  +E     N + +G+ +EVLIE  G E G   GRS    P +  VV   
Sbjct: 352 KIKRQQELMEIQKEISYQHNLSKIGKQLEVLIE--GFEDGIYYGRSYMDAPEIDGVVYVK 409

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGE 466
           + K    GD +   ITD     L GE
Sbjct: 410 SDKKLKAGDFVVATITDAYEYDLVGE 435


>gi|255525323|ref|ZP_05392263.1| MiaB-like tRNA modifying enzyme [Clostridium carboxidivorans P7]
 gi|296188191|ref|ZP_06856583.1| MiaB-like tRNA modifying enzyme [Clostridium carboxidivorans P7]
 gi|255510995|gb|EET87295.1| MiaB-like tRNA modifying enzyme [Clostridium carboxidivorans P7]
 gi|296047317|gb|EFG86759.1| MiaB-like tRNA modifying enzyme [Clostridium carboxidivorans P7]
          Length = 436

 Score =  201 bits (511), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 146/445 (32%), Positives = 239/445 (53%), Gaps = 25/445 (5%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  M + F   GYE V   + AD+ V+NTC +     +K    + R R  
Sbjct: 7   TLGCRVNKYETEAMVEKFIKDGYEVVPFEEYADVYVINTCTVTNMGDKKSRQMIHRAR-- 64

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG-KRV 149
                +E  D ++ V GC +Q   EE+ +    V+VV+G +    +   + R R   K+V
Sbjct: 65  -----RENEDAVISVVGCYSQIASEEVSQIDG-VDVVLGTRNKGEIVYWVNRVREERKQV 118

Query: 150 VDTDYSVEDK-FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           V+    +++  FE L+I    Y  K    AFL IQ+GC++FC++C++P+ RG   S+   
Sbjct: 119 VEVKEVMKNNAFEELNI--ESYQDK--TRAFLKIQDGCNRFCSYCLIPFARGAVCSKPPE 174

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK-CTFSDLLYSLSEIKGLVRLRYTT 267
           +++ E ++L  +G  EI L G +  ++   G+D E+ C+   +L  + +I G+ R+R  +
Sbjct: 175 KIISEVKELAAHGFKEIILSGIHTASY---GVDLEEDCSLLSVLEQIDKIPGIERVRIGS 231

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
             P+  ++ +I+    L  L P+ HL +QSG +  LK MNRR+TA EY +I++ +RS   
Sbjct: 232 IDPQFFTEGVIERISVLKKLCPHFHLSLQSGCNETLKRMNRRYTAGEYEKIVEDLRSNID 291

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
           D++I++D IVGFP ET+++F  T + + +I  ++   FKYSPR GT  + M   VD N+K
Sbjct: 292 DVSITTDIIVGFPEETEEEFNTTYEFLKRIKLSKIHVFKYSPRKGTKAAEMKNSVDGNIK 351

Query: 388 AER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GRSPWLQSVVLNSK 443
            ER   L+ L K + E+   F    +G+ +EVL E+       L  G +P    VV  S+
Sbjct: 352 DERSSKLIALDKVMEEE---FMKKFLGRNMEVLYEQKCSNSQDLYEGYTPNYIKVVSKSE 408

Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468
               G I    I   K   L G L+
Sbjct: 409 KDISGSIKNTEIVQTKNGILEGNLL 433


>gi|225573635|ref|ZP_03782390.1| hypothetical protein RUMHYD_01829 [Blautia hydrogenotrophica DSM
           10507]
 gi|225039003|gb|EEG49249.1| hypothetical protein RUMHYD_01829 [Blautia hydrogenotrophica DSM
           10507]
          Length = 445

 Score =  201 bits (511), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 138/448 (30%), Positives = 224/448 (50%), Gaps = 26/448 (5%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC-HIREKAAEKVYSFLGRIRN 89
           S GC  N+ DS  M  +   +GYE  +   +AD+I +NTC  I +   E + S L     
Sbjct: 7   SLGCDKNLVDSEEMLGLLRDRGYEITDDETEADVIAINTCCFIHDAKEESIQSILEMAEY 66

Query: 90  LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149
            K  R K     +++V GC+AQ   +EI +  P V+VV+G  ++ ++ + L+ A  G  +
Sbjct: 67  RKQGRCK-----VLLVTGCMAQRYQKEIRQEIPEVDVVLGTTSFEKIVDALDSAFRG--I 119

Query: 150 VDTDYSVEDKFERLS----IVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
              D+   D    +S    +  GGY        +L I EGCDK CT+C++P  RG   S 
Sbjct: 120 PYEDFESIDYLPMVSADRILTTGGYY------GYLKIAEGCDKHCTYCIIPSLRGKFRSY 173

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            + +++ +A K+   GV E+ L+ Q    + G  L G+K +   LL  L +I G+  +R 
Sbjct: 174 PMERLLKQAEKMAQQGVRELILVAQETTLY-GTDLYGKK-SLHRLLEELCKITGIYWIRV 231

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
              +P ++   L++       +  YL LP+Q  SDRILK M RR +  +  +I+  +R  
Sbjct: 232 LYCYPEEIYPELVEVIAREPKVCHYLDLPIQHASDRILKRMGRRTSKKQLVEIVRTLREK 291

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            PDI + +  I GFPGET +D    M+ VD + + +   F YSP   TP + M  Q+ E 
Sbjct: 292 IPDIVLRTTLITGFPGETQEDHEELMEFVDTMEFDRLGVFTYSPEENTPAAVMKAQISEE 351

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVLN 441
           +K +R   L +  +E  +   ++ +GQ++ V+IE    ++   VGR+    P +   +  
Sbjct: 352 IKEDRKAELMELQQEISLERGNSRIGQVLLVMIEGKVADENAYVGRTYADAPNVDGYIFV 411

Query: 442 SKNHNI--GDIIKVRITDVKISTLYGEL 467
                +  GD +KVR+T      L GE+
Sbjct: 412 QSPEMLMSGDFVKVRVTGALEYDLIGEI 439


>gi|253573595|ref|ZP_04850938.1| MiaB-like tRNA modifying enzyme YliG [Paenibacillus sp. oral taxon
           786 str. D14]
 gi|251847123|gb|EES75128.1| MiaB-like tRNA modifying enzyme YliG [Paenibacillus sp. oral taxon
           786 str. D14]
          Length = 442

 Score =  201 bits (511), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 134/454 (29%), Positives = 241/454 (53%), Gaps = 23/454 (5%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++  + + GC+ N+ DS  M  +   +GY  V++ +DA +I++NTC   + A E+  + +
Sbjct: 3   EKVKIVTLGCEKNLVDSEIMSGLIEQRGYSLVDNREDATVIIVNTCGFIDAAKEESVNTI 62

Query: 85  GRIRNLKNS-RIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
             + +LK S R+K      ++V+GC+ Q   + ++   P ++ +VG   ++++  +++ A
Sbjct: 63  LELADLKESGRLK-----ALIVSGCLTQRYKQALMEEMPEIDGIVGTGDFHQINRIVDEA 117

Query: 144 RFGKR---VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
             GK+   V +  ++ E    R  +    Y      T ++ I EGCD  CTFC +P  RG
Sbjct: 118 LKGKKPALVGNPVFNYEQALPR-KLSTARY------TTYVKIAEGCDNNCTFCSIPIMRG 170

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
              SRS+  +++E R +   GV EI+L+ Q+   + G  L GE    ++L+  +++++G+
Sbjct: 171 KFRSRSMESILEEVRSMAAQGVKEISLIAQDSTNY-GTDLYGE-FKLAELMDRVTQVEGV 228

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
             +R   ++P   +D LI+       +  Y+ +P+Q   D ILK M R     + R++I 
Sbjct: 229 EWVRLHYAYPGFFTDELIEMMATNPKICKYVDMPLQHSEDSILKRMRRPGRNRDIRELIA 288

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           +IR+  P++++ +  IVGFPGET++DF    + V +I + +   F YS    TP S + +
Sbjct: 289 KIRARIPNVSLRTSLIVGFPGETEEDFERLCEFVREIKFDRLGVFTYSKEEDTPASRLPD 348

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQ---- 436
           QVDE VK  R   L +  RE   + +   +GQ+++VLIE++       VGRS +      
Sbjct: 349 QVDEEVKEWRANTLMEIQREVANANSSKYIGQVLDVLIERYDGRSDVYVGRSQYDAPEID 408

Query: 437 -SVVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
             V + +    +G++ KVRIT      L GE V+
Sbjct: 409 GEVYVTNCPVGLGELTKVRITHAFDYDLSGEAVL 442


>gi|260888225|ref|ZP_05899488.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Selenomonas sputigena
           ATCC 35185]
 gi|260862059|gb|EEX76559.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Selenomonas sputigena
           ATCC 35185]
          Length = 412

 Score =  201 bits (511), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 143/428 (33%), Positives = 222/428 (51%), Gaps = 20/428 (4%)

Query: 44  MEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLV 103
           ME +F  +GY  V   + AD+ V+NTC +     +K    + R R L N R       ++
Sbjct: 1   MEGLFRQRGYAIVPFDEAADVYVINTCSVTSLGEKKSRQLIRRARRL-NERA------VI 53

Query: 104 VVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDT--DYSVEDKFE 161
            V GC AQ   EEI R    V VV+G +    + + +ERA     V D   D     +FE
Sbjct: 54  AVTGCYAQVAPEEI-RSIEGVRVVLGTKERAAIVDHVERAAREAGVFDGTGDIMHASEFE 112

Query: 162 RLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNG 221
            + +  G   R R   AFL I+EGC+ FC+FC++PY RG   SR L  V  EA KL+  G
Sbjct: 113 DIPLF-GAPARTR---AFLKIEEGCENFCSFCIIPYARGPVRSRLLKSVRREAAKLLAMG 168

Query: 222 VCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAH 281
             EI L G ++  +   G D    T +D + ++  + GL RLR  +    ++SD L+   
Sbjct: 169 FKEIVLTGIHLGCY---GRDLGDVTLADAVRAVLSLPGLKRLRLGSLESIELSDDLLALL 225

Query: 282 GDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPG 341
              +    +LHLP+Q+GSD +L++MNR +   ++  +I+R+    P +AIS+D IVGFPG
Sbjct: 226 AQEERFAGHLHLPLQAGSDEVLRAMNRHYDTAKFAALIERVERAVPGVAISTDIIVGFPG 285

Query: 342 ETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQ 401
           ET + F  ++  V+++ +A+   F YSPR GTP +    QV E  K ER+  +Q    ++
Sbjct: 286 ETQELFEESLAFVERMNFARMHVFPYSPRRGTPAAAFAAQVPEAEKKERVHRMQALAAKK 345

Query: 402 QVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKIS 461
             +F+ A +G  + VL E   + +G   G +     V  ++     GDI  +R+  +   
Sbjct: 346 SEAFHAAFLGTEMPVLFET--EREGVTDGLTANYIRVYTDAPVRT-GDIHAMRLVHLYRD 402

Query: 462 TLYGELVV 469
            ++GEL+ 
Sbjct: 403 GVWGELLA 410


>gi|113955194|ref|YP_731737.1| tRNA modifying protein [Synechococcus sp. CC9311]
 gi|123327578|sp|Q0I735|RIMO_SYNS3 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|113882545|gb|ABI47503.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Synechococcus sp.
           CC9311]
          Length = 470

 Score =  201 bits (511), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 131/454 (28%), Positives = 234/454 (51%), Gaps = 42/454 (9%)

Query: 33  GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCH-IREKAAEKVYSFLGRIRNLK 91
           GC+ N  D+  M  +    GY   +  +DA+L+V+NTC  I++   E V + +G      
Sbjct: 28  GCEKNRVDTEHMLGLLAEAGYGVSSDENDANLVVVNTCSFIQDAREESVRTLVG------ 81

Query: 92  NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV-- 149
              + E G  L++ AGC+AQ   +E+L   P    +VG   Y  + E+L++   G+RV  
Sbjct: 82  ---LAEQGKELII-AGCLAQHFQDELLESIPEAKAIVGTGDYQHIVEVLQQVEAGERVNR 137

Query: 150 --VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
                 +  ++   R       Y       A+L + EGCD  C FC++P+ RG + SR++
Sbjct: 138 VSQTPTFVADENLPR-------YRTTGEAVAYLKVAEGCDYRCAFCIIPHLRGNQRSRTI 190

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK-GLVRLRYT 266
             +V EA +L + GV E+ L+ Q    + G  L G K   +DLL +L +++   +R+ Y 
Sbjct: 191 ESIVAEAHQLAEQGVQELILISQITTNY-GLDLYG-KPRLADLLKALGDVEIPWIRVHY- 247

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
            ++P  ++  ++ A+ D+  ++PYL LP+Q     +L++MNR   A    +++D+IR   
Sbjct: 248 -AYPTGLTPAVLAAYRDVPNVLPYLDLPLQHSHPEVLRAMNRPWQADVNERLLDQIREQL 306

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           P+  + +  IVGFPGET+D F      +++  +     F +SP  GT  + + + V + +
Sbjct: 307 PNAILRTTLIVGFPGETEDQFEHLAGFLERQRFDHVGIFTFSPEDGTAAATLPDSVPDEI 366

Query: 387 ---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVV 439
              + ++L+ LQ+ +     + N + +G+ ++VL+E+H    G+++GR    +P +   V
Sbjct: 367 AIARKDKLMTLQQPI---SAARNASWIGKTVDVLVEQHNPSTGEMIGRCSRFAPEVDGEV 423

Query: 440 L-----NSKNHNIGDIIKVRITDVKISTLYGELV 468
           L     N    N G ++ V+IT   I  L G +V
Sbjct: 424 LVQPGDNGLQVNPGTMVPVQITGADIYDLSGHVV 457


>gi|121535290|ref|ZP_01667104.1| MiaB-like tRNA modifying enzyme YliG [Thermosinus carboxydivorans
           Nor1]
 gi|121306175|gb|EAX47103.1| MiaB-like tRNA modifying enzyme YliG [Thermosinus carboxydivorans
           Nor1]
          Length = 441

 Score =  201 bits (511), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 128/408 (31%), Positives = 216/408 (52%), Gaps = 22/408 (5%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ D+  M  +  +     V+   DAD++++NTC   + A E+  + + ++   
Sbjct: 8   SLGCAKNLVDTEVMLGILTNNNIAIVDDPGDADILIVNTCGFIDSAKEESITTILQMAEY 67

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
           K    KE     ++VAGC+ Q   +E+L   P V+ +VG   ++R+ E ++ A  G+RV+
Sbjct: 68  K----KESNCRALIVAGCLGQRYQQELLDELPEVDAIVGTGAWHRIMEAVQAALSGQRVL 123

Query: 151 ---DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
               T+   ++   R+      Y   +  +A++ + EGC   C++CV+P  RG   SR  
Sbjct: 124 VIGPTETIYDETMPRI------YTTPK-YSAYVKVAEGCSNCCSYCVIPLVRGRFRSRPQ 176

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
             +V E ++L  NG+ EI L+ Q+  ++ G+ L G+      LL +L +I+G+  +R   
Sbjct: 177 ESIVSEVKRLAANGIKEINLIAQDTTSY-GRDLYGQ-LQLPQLLRALVQIEGIEWIRLLY 234

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
            +PR  +D LI+       +  Y+ LP+Q   D ILK+M+RR + ++   ++ +IR   P
Sbjct: 235 CYPRYFTDELIEVIAKEPKICKYVDLPLQHIHDDILKAMHRRDSRFDIESLLAKIRKAIP 294

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
           D+AI + FIVGFPGETDD F+   + +    +     F YS   GT    M +QV E VK
Sbjct: 295 DVAIRTSFIVGFPGETDDHFQVLQEFMQVQKFDHVGIFTYSQEEGTVAGAMADQVPEEVK 354

Query: 388 AER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS 432
            ER   L+ LQ ++ E+    N    G++++VL+E    + G + GRS
Sbjct: 355 QERYHALMALQCQISEE---INRQLEGRVLKVLVEGKSDQPGVVFGRS 399


>gi|18310657|ref|NP_562591.1| hypothetical protein CPE1675 [Clostridium perfringens str. 13]
 gi|168207519|ref|ZP_02633524.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Clostridium
           perfringens E str. JGS1987]
 gi|168211437|ref|ZP_02637062.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Clostridium
           perfringens B str. ATCC 3626]
 gi|168214492|ref|ZP_02640117.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Clostridium
           perfringens CPE str. F4969]
 gi|168216962|ref|ZP_02642587.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Clostridium
           perfringens NCTC 8239]
 gi|182626371|ref|ZP_02954125.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Clostridium
           perfringens D str. JGS1721]
 gi|261876147|ref|YP_696362.2| putative tRNA modifying protein [Clostridium perfringens ATCC
           13124]
 gi|81766992|sp|Q8XJS9|RIMO_CLOPE RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|238065375|sp|Q0TPS8|RIMO_CLOP1 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|18145338|dbj|BAB81381.1| conserved hypothetical protein [Clostridium perfringens str. 13]
 gi|170661121|gb|EDT13804.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Clostridium
           perfringens E str. JGS1987]
 gi|170710553|gb|EDT22735.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Clostridium
           perfringens B str. ATCC 3626]
 gi|170714028|gb|EDT26210.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Clostridium
           perfringens CPE str. F4969]
 gi|177908322|gb|EDT70870.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Clostridium
           perfringens D str. JGS1721]
 gi|182380907|gb|EDT78386.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Clostridium
           perfringens NCTC 8239]
 gi|255529895|gb|ABG84692.2| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Clostridium
           perfringens ATCC 13124]
          Length = 445

 Score =  201 bits (510), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 140/407 (34%), Positives = 217/407 (53%), Gaps = 22/407 (5%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N  DS  M  M  ++ YE  N+  +AD+I++NTC   EKA ++  + +  +   
Sbjct: 10  SLGCDKNRVDSEIMLGMVQNE-YELTNNPKEADIIIVNTCGFIEKAKQESINTILDMAKY 68

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG--KR 148
           K S        L++  GC+ Q  G+E+L   P +++++G   Y ++ E +     G  ++
Sbjct: 69  KTSH----NCKLLIATGCLTQRYGDELLELMPEIDIMLGVNDYAKINEAIMNFINGNNEK 124

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           V  T+YS     E L ++          TA+L I EGCD FCT+C++P  RG   SR+L 
Sbjct: 125 VKATNYSDVSINEGLRLI-----TTDKATAYLRIAEGCDNFCTYCIIPKIRGKFRSRALE 179

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
            +V+EA+KL +NGV E+ L+ Q+   + G  + GEK     +L  L++I+G+  +R    
Sbjct: 180 SIVEEAKKLAENGVKELILIAQDTTNY-GIDIYGEK-KLHLVLRELAKIEGIEWIRVLYC 237

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
           +P  + D LIK     D +  YL LP+Q  S+ +LK M R+ T  E    I+ +R   P+
Sbjct: 238 YPEAIYDELIKEISVNDKVCNYLDLPIQHISNNVLKRMGRKTTKEEIIGKINDLRKNVPN 297

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           I + +  IVGFPGE+ +DF    D +  I   +   F YS   GTP + M +Q+DE VK 
Sbjct: 298 IVLRTSLIVGFPGESCEDFNELKDFIKTIKLDKVGVFTYSREEGTPAAIMEDQIDEEVKK 357

Query: 389 ---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS 432
              E ++ LQK++ E+    N   VG+  +VLIEK   E    +GRS
Sbjct: 358 AREEEIMLLQKEVSEE---INKNKVGREYDVLIEKFNGE--YYIGRS 399


>gi|83944908|ref|ZP_00957274.1| hypothetical protein OA2633_09774 [Oceanicaulis alexandrii
           HTCC2633]
 gi|83851690|gb|EAP89545.1| hypothetical protein OA2633_09774 [Oceanicaulis alexandrii
           HTCC2633]
          Length = 418

 Score =  201 bits (510), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 132/395 (33%), Positives = 209/395 (52%), Gaps = 27/395 (6%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           ++GC++N ++S  M D      + R   + DA  +++NTC +  +A  +    + R++  
Sbjct: 5   TFGCRLNAWESEVMRD------HARAGGLSDA--VIINTCAVTNEAVRQARQTIRRMK-- 54

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG---K 147
                +E  D  ++V GC AQ + E+  + +  V+ V+G     R PE  +    G   K
Sbjct: 55  -----RERPDARMIVTGCAAQIDPEQFAKMAE-VDQVLGNAEKLR-PETFKSTVIGGGDK 107

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
             VD   +V +    L  VDG   R R   A++ +Q GCD  CTFC++PY RG   S   
Sbjct: 108 VKVDDIMAVSEIASHL--VDGLDGRAR---AYVQVQTGCDHRCTFCIIPYGRGNARSAPA 162

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
            +VVD+ ++L++ G  E+ L G ++ +W G+ L G       +   L ++  L RLR ++
Sbjct: 163 GEVVDQVKRLVETGHSEVVLTGVDMTSW-GQDLPGTPKLGRLVRAILKQVPDLQRLRLSS 221

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
               ++ + L +A  + + L PY+HL +Q+G D ILK M RRH+  +   +  R+R+VRP
Sbjct: 222 IDAIEIDEDLFRAIAEEERLCPYMHLSLQAGDDMILKRMKRRHSRDDAIALAKRLRAVRP 281

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
           DIA  +D I GFP ET++ F+ ++ LVD+   A    F YSPR GTP + M  QVD  V 
Sbjct: 282 DIAFGADLIAGFPTETEEMFQNSLRLVDECDLAFVHVFPYSPRPGTPAARM-PQVDREVV 340

Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422
            ER   L+ K  E       + VG+ + VL+EK G
Sbjct: 341 KERAARLRAKSHEALQRHLASRVGKQMTVLVEKPG 375


>gi|110803355|ref|YP_698962.1| MiaB-like tRNA modifying enzyme YliG [Clostridium perfringens
           SM101]
 gi|123341726|sp|Q0SSE5|RIMO_CLOPS RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|110683856|gb|ABG87226.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Clostridium
           perfringens SM101]
          Length = 445

 Score =  201 bits (510), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 140/407 (34%), Positives = 217/407 (53%), Gaps = 22/407 (5%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N  DS  M  M  ++ YE  N+  +AD+I++NTC   EKA ++  + +  +   
Sbjct: 10  SLGCDKNRVDSEIMLGMVQNE-YELTNNPKEADIIIVNTCGFIEKAKQESINTILDMAKY 68

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG--KR 148
           K S        L++  GC+ Q  G+E+L   P +++++G   Y ++ E +     G  ++
Sbjct: 69  KTSH----NCKLLIATGCLTQRYGDELLELMPEIDIMLGVNDYAKINEAIMNFINGNNEK 124

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           V  T+YS     E L ++          TA+L I EGCD FCT+C++P  RG   SR+L 
Sbjct: 125 VKATNYSDVSINEGLRLI-----TTDKATAYLRIAEGCDNFCTYCIIPKIRGKFRSRALE 179

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
            +V+EA+KL +NGV E+ L+ Q+   + G  + GEK     +L  L++I+G+  +R    
Sbjct: 180 SIVEEAKKLAENGVKELILIAQDTTNY-GIDIYGEK-KLHLVLRELAKIEGIEWIRVLYC 237

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
           +P  + D LIK     D +  YL LP+Q  S+ +LK M R+ T  E    I+ +R   P+
Sbjct: 238 YPEAIYDELIKEISVNDKVCNYLDLPIQHISNNVLKRMGRKTTKEEIIGKINDLRKNVPN 297

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           I + +  IVGFPGE+ +DF    D +  I   +   F YS   GTP + M +Q+DE VK 
Sbjct: 298 IVLRTSLIVGFPGESCEDFNELKDFIKTIKLDKVGVFTYSREEGTPAAIMEDQIDEEVKK 357

Query: 389 ---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS 432
              E ++ LQK+L E+    N   +G+  +VLIEK   E    +GRS
Sbjct: 358 AREEEIMLLQKELSEE---INKNKLGREYDVLIEKFNGE--YYIGRS 399


>gi|302389780|ref|YP_003825601.1| SSU ribosomal protein S12P methylthiotransferase
           [Thermosediminibacter oceani DSM 16646]
 gi|302200408|gb|ADL07978.1| SSU ribosomal protein S12P methylthiotransferase
           [Thermosediminibacter oceani DSM 16646]
          Length = 441

 Score =  201 bits (510), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 135/451 (29%), Positives = 231/451 (51%), Gaps = 32/451 (7%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ DS  +       GY   +   +AD+I++NTC     A ++    +  +   
Sbjct: 9   SLGCDKNLVDSEYLLGALLENGYVITSDASEADIIIINTCCFINSAKQESIDTILEMAQY 68

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
           K S    G   +++  GC+AQ  G+ IL+  P ++ V+G   +++LP L+E+    +  +
Sbjct: 69  KTS----GNCKMLIATGCLAQRYGDAILKEIPELDAVIGTGDFHKLPGLIEKLNNSRLKI 124

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVT-----AFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            T        E  S ++  Y+ K+ V      +++ I EGC   C++C +P  RG   SR
Sbjct: 125 IT--------ENRSFIN--YDIKKRVRTSNYFSYVKIAEGCSNCCSYCAIPQIRGPYKSR 174

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            +  + +E   L+  GV EI L+ Q+  ++ G  + G K +  DLL +L +IKG   +R 
Sbjct: 175 PIESIKEEVELLVSQGVKEINLVAQDTTSY-GMDISG-KPSLPDLLRALVDIKGEFWIRI 232

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
             ++P  + D L++       +  YL +P+Q  +DRIL+ MNR   + + +++I++IR +
Sbjct: 233 LYAYPTHIDDELLELISSSTKIAKYLDIPLQHINDRILRLMNRPINSEQIKKLIEKIRII 292

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            PDI I + FIVGFP E+D DF+  +D V    + +  +FKYS   GT  + +  QV E 
Sbjct: 293 VPDITIRTTFIVGFPTESDSDFQELIDFVKIYRFDRVGAFKYSREEGTYAATLKPQVPER 352

Query: 386 VKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQ-S 437
           VK ER   L+ +Q+ + +     N+  +G  I VL E +   +   +GRS    P +  +
Sbjct: 353 VKQERYDQLMTVQQVISKMN---NEKMLGSTITVLAESYDPARKMFIGRSQKDAPGVDGT 409

Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           V+   +   +G   +V+IT+     L GE+V
Sbjct: 410 VMFQGEVRQLGRFYRVKITEAFEYDLMGEVV 440


>gi|289423873|ref|ZP_06425666.1| conserved hypothetical protein [Peptostreptococcus anaerobius
           653-L]
 gi|289155650|gb|EFD04322.1| conserved hypothetical protein [Peptostreptococcus anaerobius
           653-L]
          Length = 449

 Score =  201 bits (510), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 138/454 (30%), Positives = 234/454 (51%), Gaps = 28/454 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +  ++S GC  N+ D+  M  +   +G++ V+S + AD++++NTC   E A ++    + 
Sbjct: 2   KIALESLGCSKNLVDAEIMLGLLNKKGHQLVSSPEGADVVIVNTCGFIESAKQESIDSIV 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
              +LKN    EG    ++V+GC+AQ   +E+    P ++ +VG  +Y  +  ++++   
Sbjct: 62  EYADLKN----EGSLKYLLVSGCLAQRYPDELKEEIPEIDAIVGTGSYQNITTVVDKLMT 117

Query: 146 GKRVV---DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
              +V   D ++S  +   R       Y       A+L I EGCD  CT+C++P  RG  
Sbjct: 118 RDGIVEIGDINFSFNEDLPR-------YISTPDHLAYLKIGEGCDNNCTYCIIPKLRGKY 170

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR L  ++ EA  L++ GV E+ ++ Q+ + + G+   G +   ++LL  L+++ G   
Sbjct: 171 RSRKLEDLLAEAEGLLERGVKELVVIAQDTSVY-GRDRYG-RVMLAELLERLAKM-GFKW 227

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R   S+P  +++ ++      D L  Y  +P+Q  SDRILK MNR  +  E R  ++ I
Sbjct: 228 IRVMYSYPEGITEEIVDVIAKYDNLCSYFDIPMQHASDRILKLMNRHTSNQELRSKVEMI 287

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           RS  PD  I + FIVGFPGETD+DF   +D V+ +G  +  +F YS    TP   + + +
Sbjct: 288 RSKIPDATIRTTFIVGFPGETDEDFDTLIDFVENMGLDRMGAFTYSREEDTPADRLPDHI 347

Query: 383 DENVKAERLLCLQKKLREQQVS--FNDACVGQIIEVLIEKHGKEKGKLVGRSPW----LQ 436
           DE+ K ERL  L   + +Q VS   N   +G   EVLIE    +    +GR+ +    + 
Sbjct: 348 DEDTKKERLERLM--MVQQSVSEIINQKKIGNTYEVLIEDQ-IDDTLYIGRTKYDAEEID 404

Query: 437 SVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468
           SV+      ++  GD++ V +       L G LV
Sbjct: 405 SVIYVETKRDLSRGDMVDVLVESAYEYDLKGHLV 438


>gi|160933769|ref|ZP_02081157.1| hypothetical protein CLOLEP_02630 [Clostridium leptum DSM 753]
 gi|156867646|gb|EDO61018.1| hypothetical protein CLOLEP_02630 [Clostridium leptum DSM 753]
          Length = 429

 Score =  201 bits (510), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 137/447 (30%), Positives = 227/447 (50%), Gaps = 27/447 (6%)

Query: 28  FVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRI 87
           ++ + GC++N Y+S  M +     G+    + ++AD+++LN+C +   + +K+   L R 
Sbjct: 4   YILTLGCKVNQYESQAMLEELCRSGFAPAETEEEADVVILNSCTVTAASDQKMRKLLHRA 63

Query: 88  RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL-PELLERARFG 146
           R       ++    L+V+ GC+ QA  EE  +  P  ++V+G      L P +L+     
Sbjct: 64  R-------RKNPQALLVLTGCMPQAFPEEAAK-LPEPDLVLGTSNRKELVPSVLKALENR 115

Query: 147 KRVVDT-DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           +R V    Y+ +D FE L I    ++ +    AFL IQ+GC++FC++C++PY+RG   S+
Sbjct: 116 RREVKIRPYTGKDSFESLQI----HSFQERTRAFLKIQDGCNRFCSYCIIPYSRGRVRSK 171

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAW-RGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
            L ++  EAR L  +G  EI L G N++ + +  GL        D + ++  +  + R+R
Sbjct: 172 PLEELTREARTLAASGYREIVLTGINLSCYGQDSGLG-----LWDAVEAVCGLPEVERVR 226

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
             +  P  M   +++     + L P  HL +QSG D  LK MNR +TA EY  I++ IR 
Sbjct: 227 LGSLEPEQMELPVLERLARQEKLCPQFHLSLQSGCDATLKRMNRHYTAAEYESIVNNIRG 286

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           V  + ++++D +VGF GET +DF  +++   KIG+A+   F YS R GT    M  QV  
Sbjct: 287 VFDNPSVTTDMMVGFAGETPEDFEESLNFARKIGFAKVHVFAYSRRPGTAADRMPGQVPN 346

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE---KGKLVGRSPWLQSVVLN 441
            VK ER   L +   E +  F    VG+   VL E    E   +G     +P    V + 
Sbjct: 347 KVKEERSRRLIEATNEARRRFLLTQVGRTEPVLFESKRLEDYYEGYTANYTP----VHVQ 402

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
           S     G I+ V+I +      +G L+
Sbjct: 403 SPIPLFGKILSVKILEAGEDFCFGSLI 429


>gi|238917054|ref|YP_002930571.1| 2-alkenal reductase [Eubacterium eligens ATCC 27750]
 gi|238872414|gb|ACR72124.1| 2-alkenal reductase [Eubacterium eligens ATCC 27750]
          Length = 450

 Score =  201 bits (510), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 135/448 (30%), Positives = 233/448 (52%), Gaps = 38/448 (8%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC-HIREKAAEKVYSFL 84
           +    S GC  N+ D+  M  +   +G+E  +    AD+IV+NTC  I +   E + + L
Sbjct: 9   KIMFASLGCDKNLVDTENMLGILNDKGFEFTDDETQADVIVVNTCCFIGDAKQESINTIL 68

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
              ++ +++  K      ++V GC+A    +EI++  P V+  +G  +Y ++ E++    
Sbjct: 69  EMAQHKEDAVCK-----ALIVTGCLAHRYKDEIIKEIPEVDAFLGTTSYDKIAEVVTSVL 123

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTA-----FLTIQEGCDKFCTFCVVPYTR 199
            GK      ++V D   RL IV      KR +T      +L I EGCDK CT+C++P  R
Sbjct: 124 EGK-----GFNVVDDANRLPIV----KEKRIITTPGYFEYLKIAEGCDKHCTYCIIPKVR 174

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G   S  +  +V++A+ L+ NG  E+ L+ Q    + G  L G+K +   L++ L++I+ 
Sbjct: 175 GNFRSYPVEYLVEQAKHLVHNGAKELILVAQETTLY-GTDLYGKK-SLPMLIHELAKIED 232

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           L  +R    +P +++D LI+A  +   +  YL +P+Q  SD +LK M R+    E   I+
Sbjct: 233 LKWIRIQYCYPEEINDELIEAIKNEPKVCHYLDMPIQHASDNVLKRMGRKTDKQELLDIV 292

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            ++R   PDIA+ +  I GFPGET  D    M+ +D+I + +   F YS    TP + M 
Sbjct: 293 AKLRKEIPDIALRTTLIAGFPGETQADHEEVMEFIDEIEFDRLGVFTYSREEDTPAATMP 352

Query: 380 EQVDENVKA---ERLLCLQKKLREQQVSFNDAC--VGQIIEVLIEKHGKEKGKLVGRS-- 432
           +Q+D+++     + L+ LQ     Q++S + +   VG+ I+V++E +  E    VGRS  
Sbjct: 353 DQIDQDIMDTWRDELMALQ-----QEISIDKSAQMVGKTIDVMVEGYIAEDNTYVGRSYK 407

Query: 433 --PWLQSVVLNSKNHNI--GDIIKVRIT 456
             P +  +V    +  +  GD + V+IT
Sbjct: 408 DAPNVDGMVFFECDRELMSGDFVSVKIT 435


>gi|218288632|ref|ZP_03492909.1| MiaB-like tRNA modifying enzyme [Alicyclobacillus acidocaldarius
           LAA1]
 gi|218241289|gb|EED08464.1| MiaB-like tRNA modifying enzyme [Alicyclobacillus acidocaldarius
           LAA1]
          Length = 475

 Score =  201 bits (510), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 135/392 (34%), Positives = 203/392 (51%), Gaps = 19/392 (4%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N YD+  +   F  +GY +V     AD+ V+NTC +      K        R +
Sbjct: 8   TLGCKVNFYDTEGIWQTFKRRGYTQVPFDSKADVYVVNTCTVTHTGDRKS-------RQM 60

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               ++   D +VVV GC AQ   +EI R    V++VVG     ++ + +E A   +R  
Sbjct: 61  IRRAVRTNPDAVVVVTGCYAQIAPDEIARIQG-VDLVVGNDQKSKIVDHVE-AVLAERKP 118

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
                   K      +D  Y  +R   A L IQ+GC+ FCTFC++P  RG+  SR    V
Sbjct: 119 YLAVGNIMKATEFDELDVPYFEERS-RANLKIQDGCNNFCTFCIIPRARGLIRSRKPENV 177

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270
           V +A KL   G  EI L G +     G G D E    +DLL  L  I    R+R ++   
Sbjct: 178 VLQATKLARAGYREIVLTGIHTG---GYGEDFENYRLADLLLDLERIDLPFRIRISSIEA 234

Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330
            ++ D L+        ++P+LH+P+Q+GSD +L+ M+R +T  EY + +  +R   PD+A
Sbjct: 235 SEIDDRLMDVLAASKKVVPHLHIPLQAGSDPVLRRMHRHYTTAEYAEKLQELRRRLPDLA 294

Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAE- 389
           +++D IVGFPGETD+ F  T   V   GYAQ   F YSPR GT      +QV E+VK E 
Sbjct: 295 VTTDVIVGFPGETDEQFEETYAFVRAQGYAQLHVFPYSPRRGTAAYKFKDQVPEDVKRER 354

Query: 390 --RLLCLQKKLREQQVSFNDACVGQIIEVLIE 419
             R++ L  +LR+   ++  + VG+ +EV+ E
Sbjct: 355 VARMIALGDELRQ---AYAASFVGRELEVIAE 383


>gi|255505363|ref|ZP_05345671.3| RNA modification enzyme, MiaB family [Bryantella formatexigens DSM
           14469]
 gi|255268564|gb|EET61769.1| RNA modification enzyme, MiaB family [Bryantella formatexigens DSM
           14469]
          Length = 446

 Score =  200 bits (509), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 140/445 (31%), Positives = 222/445 (49%), Gaps = 20/445 (4%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC-HIREKAAEKVYSFLGRIRN 89
           S GC  N+ DS  M  +   +GY   +  + AD+I++NTC  I +   E V + L    +
Sbjct: 8   SLGCDKNLVDSEEMLGLLARRGYTMTDDEEQADIIIINTCCFINDAKEESVQTILEMAEH 67

Query: 90  LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149
            KN   +      ++V GC+AQ   EEI      V+ V+G  +Y  + E +ER   G++ 
Sbjct: 68  RKNGTCR-----ALIVTGCLAQRYREEITTEISEVDAVLGTSSYDEIVETVERVLAGQK- 121

Query: 150 VDTDYSVEDKFERLSIVDGG-YNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
               Y    + +RL   DGG      G  A L I EGCDK CT+C++P  RG   S  + 
Sbjct: 122 ----YLHFQELDRLPAPDGGRVVTTGGHYAHLKIAEGCDKHCTYCIIPQIRGNFRSVPME 177

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
           +++ +A +L   GV E+ L+ Q    + G  L G+K +   LL  L +IKG+  +R    
Sbjct: 178 RLLAQAEELAGGGVRELILVAQETTLY-GVDLYGKK-SLHLLLQELCKIKGIRWIRILYC 235

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
           +P ++ + LI+       +  YL LP+Q  S+RILK M RR +  +  +II ++R   PD
Sbjct: 236 YPEEIYEELIETIRTEKKICHYLDLPIQHASNRILKRMGRRTSREQLAEIIHKLRREIPD 295

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           IA+ +  I GFPGET +D    M  VD++ + +   F YS   GTP + M +Q+ + +K 
Sbjct: 296 IALRTTLISGFPGETQEDHEELMAFVDEMEFDRLGVFPYSQEEGTPAAAMPDQIPQEIKE 355

Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVLNSKN 444
            R   L +  +E     NDA  G+ +  ++E +  ++   V R+    P +   +     
Sbjct: 356 ARRDELMELQQEIVFEKNDAMCGRTVTAMVEGYLTDENVYVARTYADAPGVDGYLFIETQ 415

Query: 445 HNI--GDIIKVRITDVKISTLYGEL 467
             +  GD ++VRIT      L GE+
Sbjct: 416 ETLMSGDFVRVRITGALEYDLIGEI 440


>gi|320102495|ref|YP_004178086.1| 30S ribosomal protein S12P methylthiotransferase [Isosphaera
           pallida ATCC 43644]
 gi|319749777|gb|ADV61537.1| SSU ribosomal protein S12P methylthiotransferase [Isosphaera
           pallida ATCC 43644]
          Length = 489

 Score =  200 bits (509), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 124/410 (30%), Positives = 215/410 (52%), Gaps = 17/410 (4%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           F   + GC  N+ DS RM  +    GY  V   +  DL+++NTC   E A ++  + +  
Sbjct: 13  FSFVTLGCAKNLVDSERMLGLLSQDGYALVPEGEPCDLVIVNTCGFIEPARKESMAVIHE 72

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           + + K +   +G    V+VAGC+A+   EE+L + P ++ V+G     ++ +  +R   G
Sbjct: 73  LLDRKRAGTVKG----VIVAGCLAERNREELLDQVPEIDQVIGVFGREQIVQAADRVLGG 128

Query: 147 ---KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
              +R +     ++ + +R  +     +      A+L + EGCD+ CTFC +P  RG  +
Sbjct: 129 LVEQRTIFNPAPIQAQIDRARLRVTPRH-----LAYLKVSEGCDRLCTFCAIPMMRGKHV 183

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           ++ + +V+ EA +L+ +GV E+ L+ Q++  + G  L GE    ++LL  L ++ GL  +
Sbjct: 184 TKPIEEVLREAEELVRDGVRELVLVAQDMTYY-GMDLYGEP-RLAELLQRLDQLDGLDWI 241

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R    +PR  +D L         ++PYL +P+Q  +DR+L++MNRRHT  E   II R+R
Sbjct: 242 RILYCYPRHFTDELYATLAGATRIVPYLDMPLQHINDRMLRAMNRRHTKQETIGIIQRLR 301

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           +  P + + + FIVGFPGET++ F    + V +  + +   F YS    TP + +   +D
Sbjct: 302 AEIPRLVLRTTFIVGFPGETEEQFAELEEFVVQTRFERLGVFPYSYEPDTPAARLKGHLD 361

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK---HGKEKGKLVG 430
           E  K +R   +    +     FN++ VGQ +EVLI+    H + +G   G
Sbjct: 362 EETKLQRRDRIMAAQQPIAFEFNESLVGQTLEVLIDAADLHPRHEGDPFG 411


>gi|222100720|ref|YP_002535288.1| MiaB-like tRNA modifying enzyme [Thermotoga neapolitana DSM 4359]
 gi|221573110|gb|ACM23922.1| MiaB-like tRNA modifying enzyme [Thermotoga neapolitana DSM 4359]
          Length = 434

 Score =  200 bits (509), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 136/444 (30%), Positives = 243/444 (54%), Gaps = 33/444 (7%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           ++++GC++N Y+S  M +     GY  V    +A   ++N+C + ++  +KV   +  IR
Sbjct: 6   IETFGCKVNQYESEYMAEQLEKAGYT-VLPAGEASYYIINSCVVTQEVEKKVKRLVKSIR 64

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
                  ++  D  +++ GC AQ   EE  ++ P VN+V+G      + + L      ++
Sbjct: 65  -------RKNRDAKIILTGCFAQLFPEE-AKKLP-VNMVLGISEKKNIVDHLLSLNGEQK 115

Query: 149 VVDT--DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SR 205
           +V +  D  V +K      V G +  +    A++ +++GCD  CT+C + + RG ++ S+
Sbjct: 116 LVVSAPDSPVYEK------VKGSFEDR--TRAYIKVEDGCDNGCTYCAIRFARGTKVRSK 167

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            L    +E  K++  G  EI + G N+  + GK +     T  DLL  +  + G  R+R 
Sbjct: 168 PLELFKEEFEKMVIKGYKEIVITGVNLGKY-GKDIG---TTLVDLLKIVEHVPGDYRVRL 223

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
           ++ +  D++D L++   D   L P+LH+ VQSGSDR+LK M RR+++ ++ ++++++RS+
Sbjct: 224 SSLNVEDITDELVEVFRDNPRLCPHLHISVQSGSDRVLKRMGRRYSSSDFLKVVEKLRSI 283

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            PD +I++D IVGFPGETD+DF  T+ L++++ +++   F+YSPR GTP S   + V E+
Sbjct: 284 NPDFSITTDIIVGFPGETDEDFLKTVKLLEEVEFSRVHIFRYSPRPGTPASTFSDAVPEH 343

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445
            K ERL  L++K +E    +    V +   VL E +   KG L G   +        K+ 
Sbjct: 344 KKKERLNILKEKAKEVSHRYKRRMVNKKRRVLAEWY-IAKGVLSGYDEYY------VKHE 396

Query: 446 NIGDIIKVRITDVKISTLYGELVV 469
            +GD I V   +V++ +L  E V+
Sbjct: 397 FVGDGIGV-FHNVRVKSLSEEGVI 419


>gi|240144123|ref|ZP_04742724.1| RNA modification enzyme, MiaB family [Roseburia intestinalis L1-82]
 gi|257203915|gb|EEV02200.1| RNA modification enzyme, MiaB family [Roseburia intestinalis L1-82]
 gi|291536225|emb|CBL09337.1| SSU ribosomal protein S12P methylthiotransferase [Roseburia
           intestinalis M50/1]
          Length = 444

 Score =  200 bits (509), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 137/457 (29%), Positives = 227/457 (49%), Gaps = 32/457 (7%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC-HIREKAAEKVYSFL 84
           +    S GC  N+ D+  M  M    G E  +   +AD+I++NTC  I +   E + + L
Sbjct: 6   KLLFVSLGCDKNLVDTEFMLGMLRDDGIEMTDDEQEADIIIVNTCCFINDAKEESINTIL 65

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
                 K +R+K      ++V GC+AQ   EEI++  P V+ ++G  +Y  +   + ++ 
Sbjct: 66  EMAELKKEARLKS-----LIVTGCLAQRYKEEIVKEIPEVDAILGTNSYEDIVNAVHQSL 120

Query: 145 FGKRVVDTDYSVEDKFERLSIVDG--GYNRKRGVT-----AFLTIQEGCDKFCTFCVVPY 197
            GK            +E    ++G    + KR VT     A+L I EGC+K CT+C++PY
Sbjct: 121 EGKH-----------YENFKTLEGLPTLHTKRSVTTGGHFAYLKIAEGCNKRCTYCIIPY 169

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257
            RG   S  +  ++++A++L+  G  E+ L+ Q    + G  L GEK +   LL  L++I
Sbjct: 170 IRGNYRSVPMEDLIEQAKELVAAGAKELILVAQETTLY-GVDLYGEK-SLHRLLDELNKI 227

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
           K L  +R    +P ++ + LI A      +  YL +P+Q  +D ILK M RR +  +  +
Sbjct: 228 KDLFWIRIMYCYPEEIYEGLIDAMIRNQKVCHYLDIPIQHANDTILKRMGRRTSNADLVK 287

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
           II  +R   PDI + +  I GFPGET +     M  ++ + + +  +F YSP  GTP + 
Sbjct: 288 IITHLRERIPDITLRTTLICGFPGETQEMHEELMQFINDMEFDRLGAFTYSPEEGTPAAE 347

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----P 433
             +QVDEN+K +    + +   E     N+   G+ + V IE    ++   VGR+    P
Sbjct: 348 FTDQVDENLKKDWQADVMELQEEIIFDKNETMKGRELYVFIEGKVSDENAYVGRTYRDAP 407

Query: 434 WLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468
            +   +  + +  +  GDI KVR+T      L GEL+
Sbjct: 408 DVDGYIFINTDEELMTGDIAKVRVTGAYEYDLIGELI 444


>gi|169342699|ref|ZP_02863740.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Clostridium
           perfringens C str. JGS1495]
 gi|169299205|gb|EDS81275.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Clostridium
           perfringens C str. JGS1495]
          Length = 445

 Score =  200 bits (509), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 141/407 (34%), Positives = 217/407 (53%), Gaps = 22/407 (5%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N  DS  M  M  ++ YE  N+  +AD+I++NTC   EKA ++  + +  +   
Sbjct: 10  SLGCDKNRVDSEIMLGMVQNE-YELTNNPKEADIIIVNTCGFIEKAKQESINTILDMAKY 68

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG--KR 148
           K S        L++  GC+ Q  G+E+L   P +++++G   Y ++ E +     G  ++
Sbjct: 69  KTSH----NCKLLIATGCLTQRYGDELLELMPEIDIMLGVNDYAKINEGIMNFINGNNEK 124

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           V  T+YS     E L ++          TA+L I EGCD FCT+C++P  RG   SR+L 
Sbjct: 125 VKATNYSDVSINEGLRLI-----TTDKATAYLRIAEGCDNFCTYCIIPKIRGKFRSRALE 179

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
            +V+EA+KL +NGV E+ L+ Q+   + G  + GEK     +L  L++I+G+  +R    
Sbjct: 180 SIVEEAKKLAENGVKELILIAQDTTNY-GIDIYGEK-KLHLVLRELAKIEGIEWIRVLYC 237

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
           +P  + D LIK     D +  YL LP+Q  S+ +LK M R+ T  E    I+ +R   P+
Sbjct: 238 YPEAIYDELIKEISVNDKVCNYLDLPIQHISNNVLKRMGRKTTKEEIIGKINDLRKNVPN 297

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           I + +  IVGFPGE+ +DF    D +  I   +   F YS   GTP + M +Q+DE VK 
Sbjct: 298 IVLRTSLIVGFPGESCEDFNELKDFIKTIKLDKVGVFTYSREEGTPAAIMEDQIDEEVKK 357

Query: 389 ---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS 432
              E ++ LQK++ E+    N   VG+  +VLIEK   E    VGRS
Sbjct: 358 AREEEIMLLQKEVSEE---INKNKVGREYDVLIEKFNGE--YYVGRS 399


>gi|291458549|ref|ZP_06597939.1| tRNA modification enzyme, MiaB family [Oribacterium sp. oral taxon
           078 str. F0262]
 gi|291419082|gb|EFE92801.1| tRNA modification enzyme, MiaB family [Oribacterium sp. oral taxon
           078 str. F0262]
          Length = 460

 Score =  200 bits (509), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 136/412 (33%), Positives = 213/412 (51%), Gaps = 25/412 (6%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V + GC++N Y++  M     + G   V   + AD+ ++NTC +   A +K    L R R
Sbjct: 10  VHNLGCKVNAYEAEAMLRELENAGARIVPWEERADIYLINTCSVTNIADKKSRQMLHRAR 69

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
             KN       D +VV  GC  QA  EE+L     V++++G     R+ ELL     G R
Sbjct: 70  A-KNP------DAIVVGTGCYVQARKEELLSDGS-VDLLIGNAGKGRIAELLSDYLRGDR 121

Query: 149 V-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
             V  D      +E  S   GG  R     AFL +Q+GC +FC++C++PY RG   SR+L
Sbjct: 122 TPVCFDLRSVHGYEEFSA--GG--RTERARAFLKVQDGCGQFCSYCIIPYLRGEIRSRAL 177

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAW----------RGKGLDGEKCTFS--DLLYSLS 255
             ++ E R L + G  EI L G +++++          R +  +    + S   L+  ++
Sbjct: 178 PDILREVRALSEGGYREIVLTGIHLSSYGMESCGDRERRERAFNAALPSESLLSLIREVA 237

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
            + G+ R+R  +  PR +S   ++A   +    P+ HL +QSGSDR L++MNR + +  +
Sbjct: 238 SVSGIERVRLGSLEPRIISRDFVRALSGIPEFCPHFHLSLQSGSDRTLRAMNRHYDSAAF 297

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
           R+    IR   PD A+++D IVGFPGET++DF  ++  + +IG+ +   FKYS R GT  
Sbjct: 298 RESAKIIRESFPDAALTTDVIVGFPGETEEDFSESLRFISEIGFYELHVFKYSRRRGTAA 357

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK 427
             M  QV E VKAER   L    RE+   F    +G+   VL+E+  + +G+
Sbjct: 358 ERMKGQVPEKVKAERSARLIALDRERSAEFRRRFLGRRESVLLEERIEWEGR 409


>gi|313888304|ref|ZP_07821975.1| ribosomal protein S12 methylthiotransferase RimO [Peptoniphilus
           harei ACS-146-V-Sch2b]
 gi|312845707|gb|EFR33097.1| ribosomal protein S12 methylthiotransferase RimO [Peptoniphilus
           harei ACS-146-V-Sch2b]
          Length = 438

 Score =  200 bits (509), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 133/448 (29%), Positives = 233/448 (52%), Gaps = 27/448 (6%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC  N  DS  M  +     Y+ VN    AD++++NTC   + A E+    +      
Sbjct: 8   TLGCSKNDVDSSMMYSLLDKNKYQMVNEPSQADILIVNTCGFIDAAKEESIDTILESVEY 67

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
           KN    EG    V+++GC+AQ   EE+++  P ++ ++G      + ELL+R+  G   +
Sbjct: 68  KN----EGRCKKVLLSGCLAQRYPEELIKEIPEIDGIIGTGNIDYINELLDRSLAGDLFI 123

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
            TD          + ++G        T ++ I EGC+  C++C++P  RG   SR +  +
Sbjct: 124 KTDNL------NSAYIEGIRKEVVNTTEYVKISEGCNNNCSYCIIPSLRGKNRSRKIEDI 177

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYTTSH 269
             E   L+  G  EI L+ QN   +   G+D   K + ++L+  +S+I+ L  +R    +
Sbjct: 178 YSEVEYLVSKGAREIILIAQNTTDY---GIDLYSKYSLANLINKISKIEDLKWIRVLYLY 234

Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329
           P   +D LI+   + D L+ Y+ +P+Q  SD +LK MNR+ +     + +  +R   PDI
Sbjct: 235 PDHFTDELIEEFKNNDKLVNYVDMPLQHISDDVLKRMNRKTSKEHIIKTLKNLRKSVPDI 294

Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAE 389
            I + FIVGFPGE+DDDF   +D ++ I + +   F+YS   GT  +++ EQ+ +++K E
Sbjct: 295 VIRTTFIVGFPGESDDDFNQLVDFIEDIKFDKLGVFEYSKEEGTRAASLDEQIPDSIKEE 354

Query: 390 R---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSV--VL 440
           R   ++ +Q ++  + +S     +G+ +EVLIE+   E+   VGR    SP +  V  V 
Sbjct: 355 RKNEIMAIQSEISAEILS---KKIGKKLEVLIEEEVDEEN-YVGRTYMDSPEIDGVTYVH 410

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
           ++KN  +G  +++ + D     L GE++
Sbjct: 411 SAKNLEMGSFVQIDVVDSLDYDLVGEII 438


>gi|120435421|ref|YP_861107.1| hypothetical protein GFO_1066 [Gramella forsetii KT0803]
 gi|117577571|emb|CAL66040.1| conserved hypothetical protein [Gramella forsetii KT0803]
          Length = 448

 Score =  200 bits (509), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 132/438 (30%), Positives = 227/438 (51%), Gaps = 26/438 (5%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N  ++  +   F ++G++RV+  + AD+ V+NTC + E A +       R + +
Sbjct: 10  TLGCKLNFSETSTIARSFENEGFDRVDFSEKADIYVINTCSVTENADK-------RFKTI 62

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-------ERA 143
                K   +  ++  GC AQ + EE+   +  V++V+G    +++ + L       ER+
Sbjct: 63  VKQAQKSNENAFMIAVGCYAQLKPEELAEVNG-VDLVLGATEKFKITDYLNDLLSHPERS 121

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           R    V   + +  D +       G Y+      AFL +Q+GCD  CT+C +P  RGI  
Sbjct: 122 RGIGEVHSCEINEADFYV------GSYSIGDRTRAFLKVQDGCDYKCTYCTIPLARGISR 175

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK---CTFSDLLYSLSEIKGL 260
           S  L  V++ A ++ + G+ EI L G N+  + GKG  G K    TF DL+ +L +++G+
Sbjct: 176 SDELQNVLNNAAEISEQGIKEIVLTGVNIGDY-GKGEFGNKKHEHTFLDLVKALDKVEGI 234

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            RLR ++  P  + +  I    D    +P+ H+P+QSGSD ILK M RR+ +  Y   + 
Sbjct: 235 ERLRISSIEPNLLKNETIDFVADSRTFVPHFHIPLQSGSDEILKLMRRRYLSDLYVNRVG 294

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           RIR+V PD  I  D IVGFPGET++ F  T + ++++  +    F YS R  TP + M E
Sbjct: 295 RIRAVMPDACIGVDVIVGFPGETEEHFLETYNFLNELDISYLHVFTYSERDNTPAATMEE 354

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440
            V   V+ +R   L+    +++ +F ++ +G    VL E   KE G + G +     V  
Sbjct: 355 VVPVKVRKKRSKMLRGLSAKKRRAFYESQLGNTGTVLFEGENKE-GYIHGFTENYVKVKA 413

Query: 441 NSKNHNIGDIIKVRITDV 458
               + +  + K+++T++
Sbjct: 414 PWNPNKVNTLQKIKLTEI 431


>gi|88807145|ref|ZP_01122657.1| possible Fe-S oxidoreductase [Synechococcus sp. WH 7805]
 gi|88788359|gb|EAR19514.1| possible Fe-S oxidoreductase [Synechococcus sp. WH 7805]
          Length = 468

 Score =  200 bits (508), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 142/454 (31%), Positives = 230/454 (50%), Gaps = 42/454 (9%)

Query: 33  GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCH-IREKAAEKVYSFLGRIRNLK 91
           GC+ N  D+  M  +    GY   +   DA ++V+NTC  I++   E V + +G      
Sbjct: 26  GCEKNRVDTEHMLGLLSEAGYGVSSDESDASVVVVNTCSFIQDAREESVRTLVG------ 79

Query: 92  NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV-- 149
              + E G  L++ AGC+AQ   EE+L   P    +VG   Y  + E+LER   G+RV  
Sbjct: 80  ---LAEQGKELII-AGCLAQHFQEELLESLPEAKAIVGTGDYQHIVEVLERVEAGERVNR 135

Query: 150 -VDTDYSVEDKFERLSIVDGGYNRKRG-VTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
              T   V D  ERL       +R  G   A+L + EGCD  C FC++P+ RG + SR +
Sbjct: 136 VSKTPTFVAD--ERLP-----RHRTTGEAVAYLKVAEGCDYRCAFCIIPHLRGNQRSRPI 188

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK-GLVRLRYT 266
             +V EA +L   GV E+ L+ Q    + G  L G +   +DLL +L E++   +R+ Y 
Sbjct: 189 ESIVAEAHQLAAEGVKELILISQITTNY-GLDLYG-RPRLADLLQALGEVEIPWIRVHY- 245

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
            ++P  +++ +I A+ D+  ++PYL LP+Q     +L++MNR   A    +++D+IRS  
Sbjct: 246 -AYPTGLTNEVISAYRDVPNVLPYLDLPLQHSHPEVLRAMNRPWQADVNERLLDQIRSQL 304

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           PD  + +  IVGFPGET   F      +++  +     F +SP  GT  + + + VD ++
Sbjct: 305 PDAVLRTTLIVGFPGETQQQFEHLASFLERQRFDHVGVFTFSPEQGTAAAELPDPVDADI 364

Query: 387 ---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVV 439
              + +RL+ LQ+ +     + N   VG+ ++ LIE+H    G ++GR    +P +   V
Sbjct: 365 AMARKDRLMTLQQPI---SAAANARWVGRTVDALIEQHNPANGAMIGRCGRFAPEVDGEV 421

Query: 440 -----LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                 +      G +I V+IT   I  L  E+V
Sbjct: 422 HIEPRADGLQAAPGTMIPVQITGSDIYDLRAEIV 455


>gi|301165856|emb|CBW25429.1| conserved hypothetical protein [Bacteriovorax marinus SJ]
          Length = 433

 Score =  200 bits (508), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 133/444 (29%), Positives = 221/444 (49%), Gaps = 21/444 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++  + + GC++N  ++  +   F  +GYE V   + AD+I +NTC + + A        
Sbjct: 10  KKVALHTLGCRLNFSETGSVAKGFTDRGYEIVEFGEKADVIFVNTCTVTDAAD------- 62

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
              RNL     K   +  +VVAGC AQ E E I      V++V+G    Y++ E L    
Sbjct: 63  STCRNLIRKAHKSSPEGKIVVAGCYAQMEPETIANMQG-VDLVLGTSEKYKVFEYLNEED 121

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
                VD      D +   +     + R     AFL IQ+GC+  C+FC++P+ RG   +
Sbjct: 122 TTAIHVD---KTTDFYGAATTTADSHTR-----AFLKIQDGCNYVCSFCIIPFARGRSKA 173

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
            S++  ++ A+KLI++G  EI L G N+  +      GEK T  D++ +L +++GL RLR
Sbjct: 174 ISINGALENAKKLIEDGFKEIVLTGVNIGEYETSS--GEKLT--DMVKALLDLEGLERLR 229

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
            ++  P  ++D L++          + H+P+QSG D ILK+M R++T  +Y+++I++I +
Sbjct: 230 LSSVEPNTITDELLEVFKSSPKFKDHFHIPLQSGDDEILKNMRRKYTVADYKKVINKIIT 289

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             P+  I +D I GFPGET + F  T +LV ++       F YS R GT    M   +  
Sbjct: 290 AFPNAGIGADIICGFPGETKEQFENTYNLVKELPITHFHVFPYSKRKGTTAGRMDNHIHS 349

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
             K ER+  L      +   F++  VG   EVL E+  K+ G   G +     V + ++ 
Sbjct: 350 ATKKERVKSLLHLGEAKLALFSEDQVGSQSEVLFERRTKD-GLYTGYTTNYVKVYVETEL 408

Query: 445 HNIGDIIKVRITDVKISTLYGELV 468
                I  V + + K   ++ EL+
Sbjct: 409 ELKNQIRSVYLKEYKDGKVFAELI 432


>gi|33862448|ref|NP_894008.1| Fe-S oxidoreductase [Prochlorococcus marinus str. MIT 9313]
 gi|81577992|sp|Q7V8Z5|RIMO_PROMM RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|33640561|emb|CAE20350.1| possible Fe-S oxidoreductase [Prochlorococcus marinus str. MIT
           9313]
          Length = 472

 Score =  200 bits (508), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 140/453 (30%), Positives = 237/453 (52%), Gaps = 40/453 (8%)

Query: 33  GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCH-IREKAAEKVYSFLGRIRNLK 91
           GC+ N  D+  M  +    GY   +  +DA ++V+NTC  I++   E V + +G      
Sbjct: 30  GCEKNRVDTEHMLGLLTEAGYSVSSDENDAAVVVVNTCSFIQDAREESVRTLIG------ 83

Query: 92  NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVD 151
              + E G  L++ AGC+AQ   EE+L   P    +VG   Y  + ++L+R   G+RV  
Sbjct: 84  ---LAEQGKELII-AGCLAQHFQEELLESIPEAKAIVGTGDYQHIVDVLKRVEAGERVNH 139

Query: 152 TDYSVEDKFERLSIVDGGYNRKRG---VTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
                  +F    + D    R+R      A+L + EGCD  C FC++P  RG + SR + 
Sbjct: 140 VS-----EFPTF-VGDETLPRQRTTDQAVAYLKVAEGCDYRCAFCIIPKLRGDQRSRPVE 193

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK-GLVRLRYTT 267
            +V EA +L + GV E+ L+ Q    + G  L G K  F++LL +L E+    VR+ Y  
Sbjct: 194 SIVTEAHQLAEQGVQELILISQITTNY-GLDLYG-KPKFAELLQALGEVDIPWVRVHY-- 249

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
           ++P  ++  ++ A+ ++  ++ YL LP+Q     +L++MNR        +++DRIR   P
Sbjct: 250 AYPTGLTPEVLAAYREVPNVLRYLDLPLQHSHPEVLRAMNRPWQTDVNERLLDRIREQLP 309

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
           D  + +  IVGFPGET+D F      +++  +     F +SP  GT  +++ ++VD ++ 
Sbjct: 310 DAVLRTTLIVGFPGETEDHFNHLAAFIERQRFDHVGVFTFSPEDGTAAADLPDRVDPSIA 369

Query: 388 A---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWL--QSV 438
           A   +RL+ LQ+ +  ++   N   VG+ I+VLIE+H  E G ++GR    +P +  + +
Sbjct: 370 AARKDRLMALQQPISAER---NQRWVGRTIDVLIEQHNPETGAMIGRCDRFAPEVDGEVL 426

Query: 439 VLNSK---NHNIGDIIKVRITDVKISTLYGELV 468
           VL S+     + G ++ V IT   +  L G+LV
Sbjct: 427 VLPSEKGLQASPGTMVPVFITGSDVYDLTGQLV 459


>gi|217076998|ref|YP_002334714.1| Fe-S oxidoreductase [Thermosipho africanus TCF52B]
 gi|217036851|gb|ACJ75373.1| Fe-S oxidoreductase [Thermosipho africanus TCF52B]
          Length = 429

 Score =  200 bits (508), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 144/436 (33%), Positives = 239/436 (54%), Gaps = 28/436 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R  V +YGC++N Y+S  M +   ++GY  VN   ++D+ V+N+C +  +A  K+     
Sbjct: 2   RVSVLTYGCKLNQYESELMAEKLENEGYIVVNEEVESDVFVINSCVVTNEATRKIKQ--- 58

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-ERAR 144
           +IR LK  R   G    VVV GC +Q   EE+ +    V++V+G      +   L E   
Sbjct: 59  QIRRLK--RKFPGAK--VVVTGCYSQLGFEELEKEG--VDLVLGNNEKKYIDRYLGESGI 112

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI- 203
           F  +      S+ED+F   S+ +    R R   AF+ +Q+GC   C++C + + RG +I 
Sbjct: 113 FVDKAYWNRNSLEDEFVFSSLAE----RTR---AFIKVQDGCTNTCSYCAIRFARGNKIR 165

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           S+ +  VV E  +L++    EI + G N+  + GK +D    +  +LL SL +IKG  R+
Sbjct: 166 SKPVDLVVSEVLRLVNKDYKEIVITGLNLGKF-GKDIDS---SLHELLRSLVKIKGDFRI 221

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R ++ +P D+ + LI   G  + +  +LH+P+QSGS  +LK+M R +T  +Y +++D IR
Sbjct: 222 RLSSINPEDLDEELISLIGAEEKICNHLHIPLQSGSTDVLKNMRRNYTQDDYLRVVDSIR 281

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
            V P+ +I++D +VGFPGE++ DF  T+ +V ++ +++  +F+YS R  T  S M ++V 
Sbjct: 282 KVDPNFSITTDIMVGFPGESEKDFEETLKVVREVLFSKVHAFRYSDRPNTLASKMPKKVP 341

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
            NVK ER+  L+K        +    VG+  +VLIE +   K K+   S + +  VL+  
Sbjct: 342 GNVKKERVEVLEKLSAAVAKDYRKRLVGRKAKVLIESY---KNKIY--SGYDEYYVLHET 396

Query: 444 NH-NIGDIIKVRITDV 458
           +H   G I  V I  V
Sbjct: 397 SHGEFGKIENVTIQAV 412


>gi|167040267|ref|YP_001663252.1| MiaB-like tRNA modifying protein YliG [Thermoanaerobacter sp. X514]
 gi|256750808|ref|ZP_05491693.1| MiaB-like tRNA modifying enzyme YliG [Thermoanaerobacter
           ethanolicus CCSD1]
 gi|300914351|ref|ZP_07131667.1| MiaB-like tRNA modifying enzyme YliG [Thermoanaerobacter sp. X561]
 gi|307724413|ref|YP_003904164.1| MiaB-like tRNA modifying enzyme YliG [Thermoanaerobacter sp. X513]
 gi|238064963|sp|B0K1C1|RIMO_THEPX RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|166854507|gb|ABY92916.1| MiaB-like tRNA modifying enzyme YliG [Thermoanaerobacter sp. X514]
 gi|256750391|gb|EEU63410.1| MiaB-like tRNA modifying enzyme YliG [Thermoanaerobacter
           ethanolicus CCSD1]
 gi|300889286|gb|EFK84432.1| MiaB-like tRNA modifying enzyme YliG [Thermoanaerobacter sp. X561]
 gi|307581474|gb|ADN54873.1| MiaB-like tRNA modifying enzyme YliG [Thermoanaerobacter sp. X513]
          Length = 436

 Score =  200 bits (508), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 133/446 (29%), Positives = 230/446 (51%), Gaps = 28/446 (6%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N  DS +M  +   +GY  VN  + AD++++NTC   E A  +    +  +  L
Sbjct: 8   SLGCHKNTIDSEKMLAILKEKGYNIVNDENKADILIINTCGFIEDAKRESIECIIEMGKL 67

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
           K  R+K      ++  GC+++   +E+L+  P ++ V+G   ++++ E++E+   GK V+
Sbjct: 68  KKHRLK-----YLIATGCLSERYNKELLKELPELDAVIGTGDFHKIAEVIEKIEKGKTVL 122

Query: 151 DTDYSV---EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
           +  ++    ++  +R+      Y       A+L I EGC   C+FC++P  RG   SR +
Sbjct: 123 EYGHANLLNDEGIQRILTTPNYY-------AYLKIAEGCSNACSFCIIPRLRGRYRSRKM 175

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYT 266
             ++ EA +L+  GV E+ L+ Q+   +   G+D  +K     LL  +S+I GL  +R  
Sbjct: 176 EDILREAEELVKKGVKELILIAQDTTKY---GVDVYKKFMLPQLLKEISKIDGLKWIRLL 232

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
            ++P  +++ L++   + + ++ Y+ +P+Q   D +LK MNR     +  ++I R+RS+ 
Sbjct: 233 YAYPDSVTEELVEEIKNNEKIVKYIDIPLQHSHDEVLKRMNRNTNKQKIEEVISRLRSI- 291

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           P + I + F+VGFPGET+++F      V +  + +   F YS   GT    M  Q+ ++V
Sbjct: 292 PYMVIRTTFMVGFPGETEEEFEDLKQFVKEKRFERVGVFTYSREEGTKSYYMKPQIKKSV 351

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVL-- 440
           K +R   L +  +E     N + VG+ +EVLIE  G E G   GRS    P +  VV   
Sbjct: 352 KIKRQQELMEIQKEISYQHNLSKVGKQLEVLIE--GFEDGIYYGRSYMDAPEIDGVVYVK 409

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGE 466
           + K    GD +   ITD     L GE
Sbjct: 410 SDKKLKAGDFVVATITDAYEYDLVGE 435


>gi|154504516|ref|ZP_02041254.1| hypothetical protein RUMGNA_02020 [Ruminococcus gnavus ATCC 29149]
 gi|153794998|gb|EDN77418.1| hypothetical protein RUMGNA_02020 [Ruminococcus gnavus ATCC 29149]
          Length = 430

 Score =  200 bits (508), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 132/440 (30%), Positives = 238/440 (54%), Gaps = 24/440 (5%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++  + + GC++N Y++  M++M    GYE V   + AD+ V+NTC +   A  K    L
Sbjct: 2   KKVALHNLGCKVNAYETEAMQEMLEHAGYEIVPFQEGADIYVINTCTVTNIADRKSRQML 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R R +         D +VV AGC  QA+ E+ +   P +++V+G      L   L+   
Sbjct: 62  HRARKM-------NPDAVVVAAGCYVQAQAEKQVI-DPCIDIVLGNNKKQDLLTALQAYE 113

Query: 145 FG----KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
                 + V+D +++ E  +E L +   G + +    A++ +Q+GC++FC++C++PY RG
Sbjct: 114 EAHGDLREVIDINHTKE--YENLHLTKQGEHTR----AYIKVQDGCNQFCSYCIIPYARG 167

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE-KCTFSDLLYSLSEIKG 259
              SR+   VV E   L  NG  E+ L G +++++   G+D E +     L+ ++ EI+G
Sbjct: 168 RVRSRAKEDVVAEVTDLAKNGYQEVVLTGIHLSSY---GIDFENEDNLLSLIRAVHEIEG 224

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           + R+R  +  PR +++  ++A   L  + P+ HL +QSG +  LK MNRR+T+ E+ +  
Sbjct: 225 IKRIRLGSLEPRIITEEFVQAIAALPKMCPHFHLSLQSGCNETLKRMNRRYTSEEFYEKC 284

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
           + +R      A+++D IVGFP ET+++F  T + + KI + +   FKYS R GT  + M 
Sbjct: 285 EILRKYFEKPALTTDVIVGFPQETEEEFETTYEFLKKICFYETHIFKYSKREGTKAAVMQ 344

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK--LVGRSPWLQS 437
            Q+ E +KA+R   L +   + + ++ ++ +G+ +EVL+E+     GK    G +     
Sbjct: 345 GQIPEQIKAKRSARLIELGEKNRRAYEESFLGKTVEVLVEEKSDVNGKEMWTGHTKEYMK 404

Query: 438 VVLNSKNHNIGDIIKVRITD 457
           + L S+ +    I+ V+I D
Sbjct: 405 IALESEKNLQNCILNVQIKD 424


>gi|39997663|ref|NP_953614.1| MiaB-like tRNA modifying enzyme [Geobacter sulfurreducens PCA]
 gi|39984555|gb|AAR35941.1| MiaB-like tRNA modifying enzyme [Geobacter sulfurreducens PCA]
 gi|298506603|gb|ADI85326.1| MiaB-like tRNA-modifying enzyme [Geobacter sulfurreducens KN400]
          Length = 434

 Score =  200 bits (508), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 140/444 (31%), Positives = 225/444 (50%), Gaps = 22/444 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA-AEKVYSF 83
           QR  + + GC++N ++S  M +    +G+  V   D+AD+ V+NTC +  +  AE     
Sbjct: 2   QRVAITTLGCKINQFESAAMTESLGREGFRLVPFEDEADIYVINTCTVTARTDAESRRLI 61

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
              +R    +R        VVV GC AQ    + +   P V++VVG      +  LL  A
Sbjct: 62  RRAMRRNPAAR--------VVVTGCYAQV-APDAVGELPGVSLVVGNSEKKGIAGLLRDA 112

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
              ++++ +D S +   E L +     + +    AFL +Q GCD FC++C+VP+ RG   
Sbjct: 113 VPAEKILVSDISRQRTVEALGLESFAEHTR----AFLQVQNGCDAFCSYCIVPHARGRSR 168

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK-CTFSDLLYSLSEIKGLVR 262
           S     V++        G  E+ L G ++ A+   G D E   +  DLL +      + R
Sbjct: 169 SVPFRDVLEGIGTFAYQGFREVVLTGIHLGAY---GADLEPPASLLDLLEAADAEALVPR 225

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LR  +  P ++SD LI       V+ P+LH+P+QSGSD +L+ MNRR+TA  +R+ ++R+
Sbjct: 226 LRVGSVEPHEISDGLIALMARSPVICPHLHIPLQSGSDSVLERMNRRYTAAFFRERVERL 285

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
            +  PDI I  D I GFPGETD++F AT+ L++ +  A    F +S R GTP + M  QV
Sbjct: 286 AAAVPDICIGCDVIAGFPGETDEEFAATLALLEGLPIAHLHVFPFSRREGTPAARMPGQV 345

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKGKLVGRSPWLQSVVLN 441
           D  +  ER   L+     ++ +F+   +G+ + VL+    GKE   + G S    +V + 
Sbjct: 346 DGKIVRERAEVLRALSDRKRETFHRRFMGRDLPVLVLNGRGKE---VTGLSRNYITVRIE 402

Query: 442 SKNHNIGDIIKVRITDVKISTLYG 465
           +        + VRIT V+   + G
Sbjct: 403 AVTPPPEGEVMVRITGVEADGVRG 426


>gi|148269242|ref|YP_001243702.1| MiaB-like tRNA modifying enzyme [Thermotoga petrophila RKU-1]
 gi|147734786|gb|ABQ46126.1| MiaB-like tRNA modifying enzyme [Thermotoga petrophila RKU-1]
          Length = 434

 Score =  199 bits (507), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 122/392 (31%), Positives = 222/392 (56%), Gaps = 21/392 (5%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           ++++GC++N Y+S  M +     GY  V    D    ++N+C + ++  +KV   +  IR
Sbjct: 6   IETFGCKVNQYESEYMAEQLEKAGYV-VLPDGDVSYYIVNSCAVTKEVEKKVKRLIKSIR 64

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
           N +N   K      +++ GC AQ   +E   R+  V++V+G      + + +     GK+
Sbjct: 65  N-RNRNAK------IILTGCFAQLSPDEA--RNLSVDMVLGIDEKKHIVDHINSLN-GKQ 114

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSL 207
            V         +E+   V G +  +    +++ +++GCD  CT+C +   RG +I S+ L
Sbjct: 115 QVIVSEPGRPVYEK---VKGSFEDR--TRSYIKVEDGCDNTCTYCAIRLARGSKIRSKPL 169

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
               DE  +++  G  EI + G N+  + GK +     + ++LL  + ++ G  R+R ++
Sbjct: 170 EIFKDEFVEMVAKGYKEIVITGVNLGKY-GKDMGS---SLAELLKVIEKVPGDYRVRLSS 225

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
            +  D++D +++A      L P+LH+ VQSGSD +LK M R++   ++ +++D++RS+ P
Sbjct: 226 INVEDVNDEIVEAFKRNPRLCPHLHISVQSGSDDVLKRMGRKYRISDFMRVVDKLRSIDP 285

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
           D +I++D IVGFPGETDDDF+ T+DLV+K+G+++   F++SPR GTP S M   V E+ K
Sbjct: 286 DFSITTDIIVGFPGETDDDFQKTLDLVEKVGFSRVHIFRFSPRPGTPASRMGGSVPESKK 345

Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419
            ERL  L++K ++  + +    +G+  +VL E
Sbjct: 346 KERLDVLKEKAKDVSIRYRKRIIGKERKVLAE 377


>gi|332652498|ref|ZP_08418243.1| 2-methylthioadenine synthetase [Ruminococcaceae bacterium D16]
 gi|332517644|gb|EGJ47247.1| 2-methylthioadenine synthetase [Ruminococcaceae bacterium D16]
          Length = 430

 Score =  199 bits (507), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 128/444 (28%), Positives = 224/444 (50%), Gaps = 16/444 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R    + GC++N Y++  +E +   +G+  V    +AD  V+NTC +   + +K    + 
Sbjct: 2   RIAFYTLGCKVNQYETQALEQLVTQRGHTLVPFDGEADAYVINTCSVTAVSDKKSRQVIR 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R R       K   D ++ V GC +Q   +++ +    V++V G        +LLE+   
Sbjct: 62  RAR-------KTAPDAILAVCGCYSQTHPDDMDKLE--VDLVAGTGDRTGFVDLLEQTWQ 112

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT-AFLTIQEGCDKFCTFCVVPYTRGIEIS 204
             + +     ++D F+R +  +       G T A L I++GC  FC++C++PY RG   S
Sbjct: 113 KHQSITV---LDDPFQRRTFENLPAGGLEGRTRAMLKIEDGCVNFCSYCIIPYARGRIRS 169

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
             L+    +A+ L++ G  EI L G  +++W G+ L+G+      +      +   +R+R
Sbjct: 170 LPLADCAAQAKSLVEAGYQEIVLTGIEISSW-GQDLEGKPSLIDAVEAICQAVPSHIRVR 228

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
             +  PR +++   +    L+ L P+ HL +QSG D +L  MNR++ +  Y + +  +  
Sbjct: 229 LGSLEPRTITEDFCRRCAALENLCPHFHLSMQSGCDTVLARMNRKYDSSRYYESVQFLHE 288

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           V    AI++D IVGFPGET+D+F+ T+D + K G+A    F YS R GTP + M  QV  
Sbjct: 289 VYDRPAITTDLIVGFPGETEDEFQQTLDFIQKCGFAAMHIFPYSRRPGTPAAKMPGQVPN 348

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
            +K +R     +  +  + ++ D+ VGQ + VL E+  +  G  +G +     V + S  
Sbjct: 349 AIKEDRAHRAAEIAQNMEYAYLDSFVGQTVPVLFEE--ERDGVWLGHTTHYCQVGVTSTE 406

Query: 445 HNIGDIIKVRITDVKISTLYGELV 468
                + +VR+T  + S L GELV
Sbjct: 407 SLHNQLRQVRLTGREGSQLIGELV 430


>gi|281411540|ref|YP_003345619.1| MiaB-like tRNA modifying enzyme [Thermotoga naphthophila RKU-10]
 gi|281372643|gb|ADA66205.1| MiaB-like tRNA modifying enzyme [Thermotoga naphthophila RKU-10]
          Length = 434

 Score =  199 bits (507), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 122/392 (31%), Positives = 222/392 (56%), Gaps = 21/392 (5%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           ++++GC++N Y+S  M +     GY  V    D    ++N+C + ++  +KV   +  IR
Sbjct: 6   IETFGCKVNQYESEYMAEQLEKAGYV-VLPDGDVSYYIVNSCAVTKEVEKKVKRLIKSIR 64

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
           N +N   K      +++ GC AQ   +E   R+  V++V+G      + + +     GK+
Sbjct: 65  N-RNRNAK------IILTGCFAQLSPDEA--RNLSVDMVLGIDEKKHIVDHINSLN-GKQ 114

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSL 207
            V         +E+   V G +  +    +++ +++GCD  CT+C +   RG +I S+ L
Sbjct: 115 QVIVSEPGRPVYEK---VKGSFEDR--TRSYIKVEDGCDNTCTYCAIRLARGSKIRSKPL 169

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
               DE  +++  G  EI + G N+  + GK +     + ++LL  + ++ G  R+R ++
Sbjct: 170 EIFKDEFVEMVAKGYKEIVITGVNLGKY-GKDMGS---SLAELLKVIEKVPGDYRVRLSS 225

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
            +  D++D +++A      L P+LH+ VQSGSD +LK M R++   ++ +++D++RS+ P
Sbjct: 226 INVEDVNDEIVEAFKRNPRLCPHLHISVQSGSDDVLKRMGRKYRISDFMRVVDKLRSIDP 285

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
           D +I++D IVGFPGETDDDF+ T+DLV+K+G+++   F++SPR GTP S M   V E+ K
Sbjct: 286 DFSITTDIIVGFPGETDDDFQKTLDLVEKVGFSRVHIFRFSPRPGTPASRMGGSVPESKK 345

Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419
            ERL  L++K ++  + +    +G+  +VL E
Sbjct: 346 KERLDVLKEKAKDVSIRYRKRIIGKERKVLAE 377


>gi|126659494|ref|ZP_01730627.1| hypothetical protein CY0110_07204 [Cyanothece sp. CCY0110]
 gi|126619228|gb|EAZ89964.1| hypothetical protein CY0110_07204 [Cyanothece sp. CCY0110]
          Length = 414

 Score =  199 bits (507), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 133/436 (30%), Positives = 223/436 (51%), Gaps = 33/436 (7%)

Query: 44  MEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLV 103
           M  +   QGY    + + AD +++NTC   ++A E+    L  +               +
Sbjct: 1   MLGLLAQQGYSIDANEELADYVIVNTCSFIQEAREESVRTLVELAEANKK---------I 51

Query: 104 VVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERL 163
           +++GC+AQ   EE+L+  P    +VG   Y ++ ++++R   G+RV  T+ S    F   
Sbjct: 52  IISGCMAQHFQEELLQELPEAVALVGTGDYQKIVDVVQRVETGERV--TEVSQNPTF--- 106

Query: 164 SIVDGGYNRKRGVT---AFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN 220
            + D    R R      A+L + EGCD  C FC++P+ RG + SRS+  +V EA++L + 
Sbjct: 107 -VADEMTPRYRTTNEAVAYLRVAEGCDYRCAFCIIPHLRGNQRSRSIESIVTEAQQLAEQ 165

Query: 221 GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK-GLVRLRYTTSHPRDMSDCLIK 279
           GV EI L+ Q    + G  L GE    ++LL  L ++    +R+ Y  ++P  +++ +I 
Sbjct: 166 GVREIILISQITTNY-GLDLYGEP-KLAELLRVLGKVDIPWIRIHY--AYPTGLTEKVID 221

Query: 280 AHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGF 339
           A  +   ++PYL LP+Q     ILK+MNR         II+R++   P+  + + FIVGF
Sbjct: 222 AIRETPNILPYLDLPLQHSHPAILKAMNRPWQGQVNDNIIERLKEAIPNAILRTTFIVGF 281

Query: 340 PGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER---LLCLQK 396
           PGET++ F   ++ V +  +     F +SP   TP   M  QV   +  ER   L+ +Q+
Sbjct: 282 PGETEEHFEHLINFVQRHEFDHVGVFTFSPEEETPAYQMPNQVPSEIAKERRNYLMEIQQ 341

Query: 397 KLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVLNSKNHNIGDIIK 452
            +  ++   N  CVGQ +EVLIE+   +  + +GRS    P +  VV       +  I+ 
Sbjct: 342 PIAAKK---NQKCVGQTVEVLIEQENPKTEECIGRSIRFAPEVDGVVYVRGKGQLNSIMP 398

Query: 453 VRITDVKISTLYGELV 468
           V+ITD  +  LYG+++
Sbjct: 399 VKITDADVYDLYGKVI 414


>gi|332704961|ref|ZP_08425047.1| SSU ribosomal protein S12P methylthiotransferase [Lyngbya majuscula
           3L]
 gi|332356313|gb|EGJ35767.1| SSU ribosomal protein S12P methylthiotransferase [Lyngbya majuscula
           3L]
          Length = 440

 Score =  199 bits (506), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 134/450 (29%), Positives = 224/450 (49%), Gaps = 29/450 (6%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           +   GC+ N  D+  M  +    GY+   + + AD +++NTC   E+A  +    L  + 
Sbjct: 9   ISHLGCEKNRIDTEHMLGLLVQAGYQVDANEELADYVIVNTCSFIEEARRESVRTLVELA 68

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
              N +I        V+ GC+AQ    ++L   P    VVG   Y+++ ++++R   G R
Sbjct: 69  E-ANQKI--------VITGCMAQHFQSQLLEELPEAVAVVGTGDYHKIVDVIQRVETGDR 119

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVT---AFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           V   + S E  +    I D    R R  +   A+L + EGCD  C+FC++P+ RG + SR
Sbjct: 120 V--QEVSTEPSY----IADETTPRYRTTSEGVAYLRVAEGCDYRCSFCIIPHLRGKQRSR 173

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIK-GLVRL 263
           ++  +V EA +L   GV E+ L+ Q    +   GLD   +   ++LL +L E+    +R+
Sbjct: 174 TIESIVAEAEQLASQGVQELILISQITTNY---GLDIYSEPKLAELLRALGEVDIPWIRI 230

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
            Y  ++P  ++  +IKA  +   ++PYL LP+Q     IL+SMNR         II +++
Sbjct: 231 HY--AYPTGLTPSVIKAIQETHNVLPYLDLPLQHSHPEILRSMNRPWQGRVNDAIIKQLK 288

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           +  PD  + + FIVGFPGET+  F   ++ V          F +S   GT    +  Q+ 
Sbjct: 289 TALPDAVLRTTFIVGFPGETEQHFEHLLEFVQHHECDHVGVFTFSAEEGTAAYKLPNQLP 348

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVV 439
           + V   R   L    +   +  N  C+G+I++VLIE+     G+L+GRS    P +  +V
Sbjct: 349 QGVMDARRDALMAVQQPISLKKNQNCLGKIVDVLIEQENPLTGELIGRSARFAPEVDGLV 408

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELVV 469
               + ++G I+ V ITD  +  LYG +V+
Sbjct: 409 YVQGDASLGTIVSVEITDSDVYDLYGSVVL 438


>gi|87125226|ref|ZP_01081072.1| hypothetical protein RS9917_07410 [Synechococcus sp. RS9917]
 gi|86166995|gb|EAQ68256.1| hypothetical protein RS9917_07410 [Synechococcus sp. RS9917]
          Length = 458

 Score =  199 bits (506), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 138/455 (30%), Positives = 231/455 (50%), Gaps = 44/455 (9%)

Query: 33  GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCH-IREKAAEKVYSFLGRIRNLK 91
           GC+ N  D+  M  +    GY   +   DA ++V+NTC  I++   E V + +G      
Sbjct: 16  GCEKNRVDTEHMLGLLEQAGYGVSSDEQDASVVVVNTCSFIQDAREESVRTLVG------ 69

Query: 92  NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVD 151
              + E G  L++ AGC+AQ   EE+L   P    +VG   Y  + ++L+R   G+RV  
Sbjct: 70  ---LAEQGKELII-AGCLAQHFQEELLESLPEAKAIVGTGDYQHIVDVLQRVEAGERVNQ 125

Query: 152 TD----YSVEDKFERLSIVDGGYNRKRG-VTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
                 +   +   R        +R  G   A+L + EGCD  C FC++P+ RG + SR 
Sbjct: 126 VSPVPTFVANEHLPR--------HRTSGEAVAYLKVAEGCDYRCAFCIIPHLRGNQRSRP 177

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK-GLVRLRY 265
           +  +V EA +L   GV E+ L+ Q    + G  L G K   +DLL++L E++   VR+ Y
Sbjct: 178 IESIVAEAHQLAAQGVKELILISQITTNY-GLDLYG-KPRLADLLHALGEVEIPWVRVHY 235

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
             ++P  ++  ++ A+ D+  ++PYL LP+Q     +L++MNR   A    +++D+IR  
Sbjct: 236 --AYPTGLTPEVLAAYRDVSNVLPYLDLPLQHSHPDVLRAMNRPWQADVNERLLDQIRDQ 293

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            PD  + +  IVGFPGET+  F      +++  +     F +SP  GT  + +  +V+  
Sbjct: 294 LPDAVLRTTLIVGFPGETEAHFEHLATFLERQRFDHVGVFTFSPEDGTAAATLPGRVEAE 353

Query: 386 V---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSV 438
           V   + +RL+ LQ+ +     + N+A VG+ ++VLIE+H    G ++GR    +P +   
Sbjct: 354 VAVARKDRLMMLQQPI---SAARNNAWVGRTVDVLIEQHNPSSGAMIGRCARFAPEVDGE 410

Query: 439 VL-----NSKNHNIGDIIKVRITDVKISTLYGELV 468
           VL     N+     G ++ V+IT   +  L G LV
Sbjct: 411 VLVQPGANNLQAGPGTMVPVQITGGDVYDLSGHLV 445


>gi|301107328|ref|XP_002902746.1| CDK5 regulatory subunit-associated protein 1 [Phytophthora
           infestans T30-4]
 gi|262097864|gb|EEY55916.1| CDK5 regulatory subunit-associated protein 1 [Phytophthora
           infestans T30-4]
          Length = 594

 Score =  199 bits (506), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 125/387 (32%), Positives = 214/387 (55%), Gaps = 35/387 (9%)

Query: 47  MFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNS--RIKEGGDLLVV 104
           +    GY    + D AD+++LNTC +R+ A  K+++ L  +R +K    R++      V 
Sbjct: 84  ILLESGYTSAPAADAADVVLLNTCAVRDNAEAKIWNRLESLRQVKAKLLRLQHKKVQTVG 143

Query: 105 VAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR-FGKRVVDTDYSVEDKFERL 163
           V GC+A+   +++L    +V++VVGP  Y  +P LL      G+  V+   S+++ +  +
Sbjct: 144 VLGCMAERLKKKLLDSDKMVDLVVGPDAYRDIPNLLRVVLGSGEAAVNVQLSLDETYADI 203

Query: 164 SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVC 223
           + V    +     +AF++I  GC+  C++C+VP+TRG E SR ++ +VDE R L D GV 
Sbjct: 204 APVRADPH---SPSAFVSIMRGCNNMCSYCIVPFTRGRERSRVMNSIVDEVRALSDQGVK 260

Query: 224 EITLLGQNVNAW----------RGKGL-------------DGEKCTFSDLLYSLSEIKGL 260
           E+ LLGQNVN++          +G+G              D     F+DLL  +S +   
Sbjct: 261 EVVLLGQNVNSYHDKKSEGAAEKGRGYVSSTGFSNMFRSRDAPGFRFADLLDKVSRVDPE 320

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
           +RLR+T+ HP+D  + ++    +   +   +H+P QSGS  +L+ M R ++   Y  ++D
Sbjct: 321 MRLRFTSPHPKDFPNEVLDLVNERPNICKQIHMPAQSGSTTMLERMRRGYSREAYLALVD 380

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
            +R+  P +AISSDFI GF GET+++   T+ L+ ++ Y QAF F YS R  T  ++ +E
Sbjct: 381 NMRARIPGVAISSDFIAGFCGETEEEHADTISLMRQVCYDQAFMFAYSVRARTHAAHRME 440

Query: 381 QVDENVKAERLLCLQKKLREQQVSFND 407
             D+  + E+L    ++LRE   +F++
Sbjct: 441 --DDVTQEEKL----RRLREVIDTFSE 461


>gi|288572914|ref|ZP_06391271.1| MiaB-like tRNA modifying enzyme [Dethiosulfovibrio peptidovorans
           DSM 11002]
 gi|288568655|gb|EFC90212.1| MiaB-like tRNA modifying enzyme [Dethiosulfovibrio peptidovorans
           DSM 11002]
          Length = 432

 Score =  199 bits (506), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 138/445 (31%), Positives = 237/445 (53%), Gaps = 27/445 (6%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           +K+ GC+ N+Y++  +   F   G  R+   +D D  VL +C +  +A  K    + R R
Sbjct: 8   IKALGCRTNLYEADAIASAFTRAGC-RITEGNDWDAAVLVSCSVTAEADRKSRQIVRRFR 66

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG-- 146
                   EG   LVV  GC AQ    +  +   +  +V   +    +P ++E  R G  
Sbjct: 67  RAS----PEG---LVVATGCWAQGISYDEAKALGVDLLVGNRRKDEVVPLVMETLRGGVP 119

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVT-AFLTIQEGCDKFCTFCVVPYTRGIEISR 205
             V++T  +   ++E L +     +R    T AFL +Q+GCD FC++C++P+ RG  +SR
Sbjct: 120 HGVMET-VATSSRWESLFL-----DRPSLTTRAFLKVQDGCDHFCSYCIIPFLRGKPVSR 173

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            L  +  E R ++++G  EI L G ++  +  +G  G     +DLL ++  I G+ R+R+
Sbjct: 174 PLDDLEREVRSVVESGCPEIVLTGVHLGLYGREGGPG----LADLLRAVGAIDGVKRIRF 229

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
            +  P  + D L+ A  +++   P+LHLP+QSG DR+L +M R HTA EY  ++DRI+S 
Sbjct: 230 GSLEPFSVGDDLLDAMAEIESFCPHLHLPLQSGDDRVLNAMGRGHTADEYLSLLDRIKSA 289

Query: 326 R-PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
              D+ IS+D +VGFPGE D  F  T+ +++  G  +  SF YSPR GT  +++ ++  +
Sbjct: 290 MGEDVHISTDILVGFPGEDDLAFANTLSVLELGGIGRIHSFPYSPRKGTKAASLPDRPPK 349

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSP-WLQSVVLNSK 443
           ++  ER   + +K RE    +    VG+   +LIE+    +G++ G +P +++   L   
Sbjct: 350 SIAEERCKTVIEKGRELLDRYVSRWVGKEELLLIEE--VSEGRVSGYTPHFIRLSALGCG 407

Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468
              +  I++ RI D+    L GE++
Sbjct: 408 --KVDGIVRCRIADMVDGELRGEVI 430


>gi|291538907|emb|CBL12018.1| SSU ribosomal protein S12P methylthiotransferase [Roseburia
           intestinalis XB6B4]
          Length = 444

 Score =  199 bits (506), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 136/457 (29%), Positives = 227/457 (49%), Gaps = 32/457 (7%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC-HIREKAAEKVYSFL 84
           +    S GC  N+ D+  M  M    G E  +   +AD+I++NTC  I +   E + + L
Sbjct: 6   KLLFVSLGCDKNLVDTEFMLGMLRDDGIEMTDDEQEADIIIVNTCCFINDAKEESINTIL 65

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
                 K +R+K      ++V GC+AQ   EEI++  P V+ ++G  +Y  +   + ++ 
Sbjct: 66  EMAELKKEARLKS-----LIVTGCLAQRYKEEIVKEIPEVDAILGTNSYEDIVNAVHQSL 120

Query: 145 FGKRVVDTDYSVEDKFERLSIVDG--GYNRKRGVT-----AFLTIQEGCDKFCTFCVVPY 197
            GK            +E    ++G    + KR VT     A+L I EGC+K CT+C++PY
Sbjct: 121 EGKH-----------YENFKTLEGLPTLHTKRSVTTGGHFAYLKIAEGCNKRCTYCIIPY 169

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257
            RG   S  +  ++++A++L+  G  E+ L+ Q    + G  L GEK +   LL  L++I
Sbjct: 170 IRGNYRSVPMEDLIEQAKELVAAGAKELILVAQETTLY-GVDLYGEK-SLHRLLDELNKI 227

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
           + L  +R    +P ++ + LI A      +  YL +P+Q  +D ILK M RR +  +  +
Sbjct: 228 EDLFWIRIMYCYPEEIYEGLIDAMIRNQKVCHYLDIPIQHANDTILKRMGRRTSNADLVK 287

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
           II  +R   PDI + +  I GFPGET +     M  ++ + + +  +F YSP  GTP + 
Sbjct: 288 IITHLRERIPDITLRTTLICGFPGETQEMHEELMQFINDMEFDRLGAFTYSPEEGTPAAE 347

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----P 433
             +QVDEN+K +    + +   E     N+   G+ + V IE    ++   VGR+    P
Sbjct: 348 FTDQVDENLKKDWQADVMELQEEIIFDKNETMKGRELYVFIEGKVSDENAYVGRTYRDAP 407

Query: 434 WLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468
            +   +  + +  +  GDI KVR+T      L GEL+
Sbjct: 408 DVDGYIFINTDEELMTGDIAKVRVTGAYEYDLIGELI 444


>gi|304316847|ref|YP_003851992.1| RNA modification enzyme, MiaB family [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778349|gb|ADL68908.1| RNA modification enzyme, MiaB family [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 437

 Score =  199 bits (505), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 137/451 (30%), Positives = 235/451 (52%), Gaps = 34/451 (7%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N  DS +M  +   +GY  VN+ +DAD++++NTC   E A  +  +++  +  L
Sbjct: 8   SLGCAKNTVDSEKMLGIIKEKGYNIVNNENDADVLIINTCGFIESAKRESINYIIEMGKL 67

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
           K  R+K      ++ AGC+++   EE+L   P ++ V+G   + ++ E++E    GKRV+
Sbjct: 68  KEKRLKS-----LIAAGCLSERYKEELLSNLPELDAVIGTGDFLKISEIIESTLNGKRVL 122

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVT---AFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
           +  ++ E       + D    R         +L I EGC+  C+FC++P  RG   S  +
Sbjct: 123 EYGHADE-------LDDANSPRMLSTPKHYGYLKIAEGCNNKCSFCIIPKLRGHYRSVKI 175

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYT 266
             +V+EA+ +  NGV E+ L+ Q+   +   G+D  +K     LL  LS+I  +  +R  
Sbjct: 176 EDLVNEAKIMAKNGVRELILIAQDTTKY---GIDIYKKFMLPTLLRELSKIDEIKWIRIL 232

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
            ++P  ++D LI+       L+ Y+ +P+Q  ++ +LK M R     +  +IID++R++ 
Sbjct: 233 YAYPDSITDELIEEIRTNSKLLKYVDMPLQHSNNNVLKRMKRNTQKEKIEEIIDKLRTI- 291

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
             + I + FIVGFPGETD +F    D + +  + +   F YS    T    M  QV E +
Sbjct: 292 SGMVIRTTFIVGFPGETDTEFDDLKDFIKEKKFNKLGVFTYSREEDTEAYGMPNQVPEKI 351

Query: 387 KAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSV- 438
           K +R   ++ LQ+ +    ++ N + +G  +E++IE  G + G   GRS    P +  V 
Sbjct: 352 KQKRYNEIMLLQRNI---SLNNNKSLIGTELEIVIE--GYKDGLYYGRSYIDAPDIDGVT 406

Query: 439 -VLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            V + +  NIGD +KVRI+      L GEL+
Sbjct: 407 FVKSDRKLNIGDFVKVRISKAFDYDLMGELL 437


>gi|237738331|ref|ZP_04568812.1| radical SAM domain-containing protein [Fusobacterium mortiferum
           ATCC 9817]
 gi|229420211|gb|EEO35258.1| radical SAM domain-containing protein [Fusobacterium mortiferum
           ATCC 9817]
          Length = 445

 Score =  199 bits (505), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 140/438 (31%), Positives = 233/438 (53%), Gaps = 31/438 (7%)

Query: 31  SYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRN 89
           S GC  N+ DS     +    +  E  + + +AD++++NTC     A E+    +     
Sbjct: 7   SLGCSKNLVDSEHYLGILSKRKEMELTSELSEADIVIVNTCGFIGDAKEESIETI----- 61

Query: 90  LKNSRIKEGGDLL-VVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
           L+ S  KE G+L  ++VAGC+AQ   EEIL+  P V+ V+G     ++ ++++     K+
Sbjct: 62  LEVSEFKETGNLKKLIVAGCLAQKYSEEILKELPEVDAVIGTGDIDKIEKVVDEILENKK 121

Query: 149 VVDTD---YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           VV+T    +      ER+             TA+L I EGC++ CT+C++P  RG   SR
Sbjct: 122 VVETKNMTFLANANTERVLTTASH-------TAYLKISEGCNRACTYCIIPQMRGRLRSR 174

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           S+  +V+EA++L+ +GV EI LL Q    + G  L G+K   + L+  L +I+GL  LR 
Sbjct: 175 SIEDIVEEAKRLVASGVREINLLAQETTEY-GIDLYGDK-KLAALMKELCKIEGLKWLRT 232

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
              HP  ++D LI+     + +  Y  +P+Q  SD IL++M R  +  + + +++RIR  
Sbjct: 233 YYMHPEYVTDELIEVMKSEEKICKYFDVPIQHVSDNILRNMARAKSGEQVKDVLNRIRKA 292

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P+  I +  IVGFPGET+++F+  MD V +  +  A  FKYS    T   N+  QV E 
Sbjct: 293 IPEATIRTTLIVGFPGETEENFQELMDYVREFEFDYAGVFKYSREEDTVAYNLPNQVPEE 352

Query: 386 VKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-----KGKLVGRSPWLQS 437
           +K +R   L+ LQ ++ E++   N   +G+ IEV+I+    E     +G+  G++  +  
Sbjct: 353 IKEKRYAELVNLQSEIAERK---NRRLLGEEIEVMIDGVSSESEYLLEGRTRGQALEIDG 409

Query: 438 VVLNSK-NHNIGDIIKVR 454
            VL +      G+I+KV+
Sbjct: 410 KVLTTDGTAKPGEIVKVK 427


>gi|313897359|ref|ZP_07830902.1| tRNA methylthiotransferase YqeV [Clostridium sp. HGF2]
 gi|312957729|gb|EFR39354.1| tRNA methylthiotransferase YqeV [Clostridium sp. HGF2]
          Length = 441

 Score =  199 bits (505), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 132/445 (29%), Positives = 231/445 (51%), Gaps = 24/445 (5%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           F + + GC++N Y+S   E     +GYE+V+  + AD+ ++NTC +   A  K       
Sbjct: 4   FAIATLGCKVNTYESQGYESALLEKGYEQVSFKEKADVYIINTCAVTNTAGSKS------ 57

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
            R   ++ I    + L+ V GC AQ   E+ L +   +++++G     RL +++E     
Sbjct: 58  -RQKIHAAIALNPEALIAVVGCYAQTASEQ-LEQDANIDILLGSDGKSRLADMIEEGLRK 115

Query: 147 KRVVDTDYSVE--DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
           KR     + V   + FE L I    +  +    AFL IQ+GC++FC++C++P+ RG E S
Sbjct: 116 KRPQKLIHDVRKVNVFEALPI----HRFEHQTRAFLKIQDGCNQFCSYCIIPFARGAERS 171

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
               +V+  AR L ++G  EI L G +   + G G++   C     +  + EI  L R+R
Sbjct: 172 LPEDEVLAIARSLSESGHREIVLSGIHTGRY-GNGINSSLCQLMKRM--VKEIPKLQRIR 228

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
            ++    +++D L++     + +  +LH+PVQS +  +LK+MNR +T   + + +D IRS
Sbjct: 229 ISSIEMNEITDELLEFIKGEEKIARHLHIPVQSANTTVLKNMNRPYTIAWFMERVDYIRS 288

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           + PDI+ISSD I GFP E+++ F+ T+D + ++  +    F YS R  T  + M   ++ 
Sbjct: 289 LIPDISISSDVITGFPQESEEQFQDTLDNIARMRLSFLHVFPYSRRDHTAAAQMSGHLEN 348

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
            +K ER   L    ++   ++    +G+ + V+ EK  ++ GKL+G S     V   +  
Sbjct: 349 KIKKERASRLANLSKQLYTAYKQNFIGKEVSVIFEK--EKDGKLIGHSSEYLEVAAAAPL 406

Query: 445 HNIGDIIKVRITDVKISTLYGELVV 469
             +  +  VRIT      L G+L+V
Sbjct: 407 AWLHTMHTVRIT-----ALDGDLLV 426


>gi|323701900|ref|ZP_08113570.1| MiaB-like tRNA modifying enzyme YliG [Desulfotomaculum nigrificans
           DSM 574]
 gi|323533204|gb|EGB23073.1| MiaB-like tRNA modifying enzyme YliG [Desulfotomaculum nigrificans
           DSM 574]
          Length = 445

 Score =  199 bits (505), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 132/449 (29%), Positives = 228/449 (50%), Gaps = 24/449 (5%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ DS  M  +     +   ++  +AD++++NTC   + A E+    +  +   
Sbjct: 9   SLGCPKNLVDSEVMLGLLREAKFNITSNEAEADVLIVNTCGFIQSAKEESIRHIFELAQY 68

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGP----QTYYRLPELLERARFG 146
           K+     G    +VV GC+AQ   +E++   P ++ +VGP         + E+L   +  
Sbjct: 69  KD----RGRCQALVVTGCLAQRYHQELMEEIPEIDALVGPGHINDIVQIIKEILANKQRK 124

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
             + + +Y  ++   RL +    Y      TA++ + EGCD  C +C +P  RG   SR 
Sbjct: 125 SHICEPEYIYDEYAPRL-LSTPTY------TAYIKVAEGCDNRCAYCAIPNIRGRFRSRP 177

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
           L  +V EA+ L+ NG  EI L+ Q+   + G+ + G+  +   LL+ L +I  L  +R  
Sbjct: 178 LESIVAEAKTLVANGTREIILIAQDTTRY-GQDIYGQY-SLDKLLWLLQDIPDLKWIRIL 235

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
             +P   +D LIKA   L  +  Y+ LPVQ  ++ IL++M R     + R +IDR+R   
Sbjct: 236 YCYPNRFTDGLIKAIAQLPKVCKYIDLPVQHANNEILRAMGRPGNQQQVRSLIDRLRREI 295

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           P + + + FIVGFPGET++ F+  ++ + ++ + +A  F YS   GTP + +  Q+ E +
Sbjct: 296 PGLVLRTSFIVGFPGETEEQFQELLNFMQQVKFDRAGVFTYSQEEGTPAAELPNQIPEEI 355

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK--HGKEK---GKLVGRSPWLQSVV-- 439
           K ER        RE  ++ N   +GQ++EVL+EK   G +    G+ +G +P +   V  
Sbjct: 356 KQERYHRAMTLQREISLAQNQRRIGQVLEVLVEKVIDGSKNIYAGRSMGDAPEIDGTVEI 415

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
           ++++    G+ + V+IT      L GEL 
Sbjct: 416 VSTRPLISGEFVHVKITRALEYDLMGELA 444


>gi|124021929|ref|YP_001016236.1| Fe-S oxidoreductase [Prochlorococcus marinus str. MIT 9303]
 gi|238066589|sp|A2C661|RIMO_PROM3 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|123962215|gb|ABM76971.1| possible Fe-S oxidoreductase [Prochlorococcus marinus str. MIT
           9303]
          Length = 472

 Score =  199 bits (505), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 141/453 (31%), Positives = 236/453 (52%), Gaps = 40/453 (8%)

Query: 33  GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCH-IREKAAEKVYSFLGRIRNLK 91
           GC+ N  D+  M  +    GY   +  +DA ++V+NTC  I++   E V + +G      
Sbjct: 30  GCEKNRVDTEHMLGLLTEAGYSVSSDENDAAVVVVNTCSFIQDAREESVRTLIG------ 83

Query: 92  NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVD 151
              + E G  L++ AGC+AQ   EE+L   P    +VG   Y  + ++L+R   G+RV  
Sbjct: 84  ---LAEQGKELII-AGCLAQHFQEELLESIPEAKAIVGTGDYQHIVDVLKRVEAGERV-- 137

Query: 152 TDYSVEDKFERLSIVDGGYNRKRGV---TAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
              S    F    + D    R+R      A+L + EGCD  C FC++P  RG + SR + 
Sbjct: 138 NRVSAFPTF----VGDETLPRQRTTDQAVAYLKVAEGCDYRCAFCIIPKLRGDQRSRPVE 193

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK-GLVRLRYTT 267
            +V EA +L + GV E+ L+ Q    + G  L G K  F++LL +L E+    VR+ Y  
Sbjct: 194 SIVAEAHQLAEQGVQELILISQITTNY-GLDLYG-KPKFAELLQALGEVDIPWVRVHY-- 249

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
           ++P  ++  ++ A+ ++  ++ YL LP+Q     +L++MNR        +++DRIR   P
Sbjct: 250 AYPTGLTPEVLAAYREVPNVLRYLDLPLQHSHPDVLRAMNRPWQTDVNERLLDRIREQLP 309

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
           D  + +  IVGFPGET+D F      +++  +     F +SP  GT  +++  +VD ++ 
Sbjct: 310 DAVLRTTLIVGFPGETEDHFNHLAAFIERQRFDHVGVFTFSPEDGTAAADLPNRVDPSIA 369

Query: 388 A---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWL--QSV 438
           A   +RL+ LQ+ +  ++   N   VG+ I+VLIE+H  E G ++GR    +P +  + +
Sbjct: 370 AARKDRLMALQQPISAER---NQRWVGRTIDVLIEQHNPETGAMIGRCDRFAPEVDGEVL 426

Query: 439 VLNSK---NHNIGDIIKVRITDVKISTLYGELV 468
           VL S+     + G ++ V IT   +  L G+LV
Sbjct: 427 VLPSEKGLQASPGTMVPVFITGSDVYDLTGQLV 459


>gi|116073885|ref|ZP_01471147.1| hypothetical protein RS9916_35582 [Synechococcus sp. RS9916]
 gi|116069190|gb|EAU74942.1| hypothetical protein RS9916_35582 [Synechococcus sp. RS9916]
          Length = 513

 Score =  198 bits (504), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 133/454 (29%), Positives = 232/454 (51%), Gaps = 42/454 (9%)

Query: 33  GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCH-IREKAAEKVYSFLGRIRNLK 91
           GC+ N  D+  M  +    GY   +  +DA+++V+NTC  I++   E V + +G      
Sbjct: 71  GCEKNRVDTEHMLGLLSEAGYGVSSDENDANVVVVNTCSFIQDAREESVRTLVG------ 124

Query: 92  NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV- 150
              + E G  L++ AGC+AQ   +E+L   P    +VG   Y  + ++L+R   G+RV  
Sbjct: 125 ---LAEQGKELII-AGCLAQHFQDELLESLPEAKAIVGTGDYQHIVDVLKRVEAGERVKQ 180

Query: 151 ---DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
              +  +  ++   R       Y       A+L + EGCD  C FC++P+ RG + SR +
Sbjct: 181 VSENPTFVGDENLPR-------YRTTGEAVAYLKVAEGCDYRCAFCIIPHLRGDQRSRPI 233

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK-GLVRLRYT 266
             +V EA +L   GV E+ L+ Q    + G  L G K   +DLL +L E++   +R+ Y 
Sbjct: 234 ESIVAEAHQLAAQGVQELILISQITTNY-GLDLYG-KPRLADLLRALGEVEIPWIRVHY- 290

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
            ++P  ++  ++ A+ ++  ++PYL LP+Q     +L++MNR   A    +++D+IR   
Sbjct: 291 -AYPTGLTPDVLAAYREVPNVLPYLDLPLQHSHPDVLRAMNRPWQADVNERLLDQIREQL 349

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           PD  + +  IVGFPGET++ F      +++  +     F +SP  GTP + + + V E V
Sbjct: 350 PDAVLRTTLIVGFPGETEEQFEHLASFIERQRFDHVGVFTFSPEDGTPAATLPDHVPEEV 409

Query: 387 ---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVV 439
              + ++L+ LQ+ +     + N + VG+ ++VLIE+H    G+++GR    +P +   V
Sbjct: 410 AIARKDKLMGLQQPI---SAAGNASWVGRTVDVLIEQHNPTTGEMIGRCARFAPEVDGEV 466

Query: 440 L-----NSKNHNIGDIIKVRITDVKISTLYGELV 468
           L     N      G ++ V IT   +  L G +V
Sbjct: 467 LVQPGDNGIQAGPGTMVPVLITGADVYDLTGRIV 500


>gi|134299776|ref|YP_001113272.1| MiaB-like tRNA modifying protein YliG [Desulfotomaculum reducens
           MI-1]
 gi|238065335|sp|A4J5U4|RIMO_DESRM RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|134052476|gb|ABO50447.1| SSU ribosomal protein S12P methylthiotransferase [Desulfotomaculum
           reducens MI-1]
          Length = 444

 Score =  198 bits (504), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 146/449 (32%), Positives = 227/449 (50%), Gaps = 24/449 (5%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ DS  M  +     +   N+  +AD +++NTC   E A E+    +  +   
Sbjct: 8   SLGCPKNLVDSEVMLGLLRENNFTITNNEANADALIVNTCGFIESAKEESIRHIFELAQY 67

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK--- 147
           K    + G    ++V GC+AQ   +E+L   P ++V++GP     + E++  A  GK   
Sbjct: 68  K----ERGKCKALIVTGCLAQRYSKELLEEIPEIDVILGPGHVSNIVEVVNHALEGKDRH 123

Query: 148 -RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
            RV D  Y  ++   RL +    Y      TA++ I EGCD  C +C +P  RG   SR 
Sbjct: 124 TRVEDLLYIYDEHSPRL-LSTPSY------TAYVKIAEGCDNRCAYCAIPDIRGKFRSRP 176

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
           +  +  E + L++ GV EI L+ Q+   + G  L GE      LL  L  I+GL  +R  
Sbjct: 177 IESIEAEVKDLVEKGVREIILIAQDTTRY-GLDLYGEY-RLDQLLERLGPIQGLQWIRLL 234

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
             +P   +D LIKA  +   +  Y+ LP+Q  ++ IL++M R  T  + R +I ++R+  
Sbjct: 235 YCYPNRFTDQLIKAMAENPNICKYIDLPMQHAANDILRAMKRPVTKQQARILIQKLRTEI 294

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           P I I + FIVGFPGET++ F+  +D ++++ + +A  F YS   GTP + M  Q+   +
Sbjct: 295 PGIVIRTSFIVGFPGETEEHFKELLDFMEEVKFDRAGVFTYSQEEGTPAAEMPNQIHGRI 354

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRS----PWLQSVV-- 439
           K ER     K  RE  +S N   +GQ IEV++E+   + KG   GRS    P +   V  
Sbjct: 355 KQERYHRAMKLQREISLSQNQKRIGQEIEVVVEEVTDQSKGVYTGRSSYDAPEIDGTVEF 414

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
            +S+   IGD +KV+I       L GEL 
Sbjct: 415 TSSRPLRIGDFVKVKINRALEYDLMGELA 443


>gi|332981525|ref|YP_004462966.1| 30S ribosomal protein S12P methylthiotransferase [Mahella
           australiensis 50-1 BON]
 gi|332699203|gb|AEE96144.1| SSU ribosomal protein S12P methylthiotransferase [Mahella
           australiensis 50-1 BON]
          Length = 440

 Score =  198 bits (504), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 141/456 (30%), Positives = 236/456 (51%), Gaps = 26/456 (5%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           +P    + S GC  N+ DS  M      +GY   N   +AD+I++NTC   E A ++  +
Sbjct: 1   MPYNIGMISLGCPKNLVDSETMLAELADKGYVITNDPKEADVIIINTCSFIESAKQESIN 60

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVA-GCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
            +     L+ +R KE G    ++A GC++Q   E++L   P +N V+G   Y+ +  +++
Sbjct: 61  TI-----LEMARYKEIGRCKGLIAVGCLSQQYKEQLLDEIPELNAVIGTGDYHSIGLVVD 115

Query: 142 RARFGKRVV---DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
           +   G +V      D SVE   +R+              A++ I EGCD  C++C++P+ 
Sbjct: 116 KILNGGKVAYFEGGDVSVEGIEKRIL-------STPPYMAYVKIAEGCDNGCSYCIIPFL 168

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258
           RG   SR +  +++E ++L+D GV EI L+ Q+ + + G+ + G K   ++LL+ L  I 
Sbjct: 169 RGPYRSRPMENIIEECKELVDRGVKEIILIAQDTSVY-GRDIYG-KPRLAELLHELDNIN 226

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
            +  +R    +P  ++D LI+A      +  Y+ +P+Q  +D+IL  M RR  + + + +
Sbjct: 227 NIEWIRVLYCYPDYVNDELIEAIVQSRHVCHYIDIPIQHINDKILAKMGRRSRSNDIKGV 286

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           I+R+R   P IAI +  IVGFPGETD DF+   D V++        F YS   GT  + M
Sbjct: 287 IERLRKCIPGIAIRTSLIVGFPGETDRDFQMLRDFVEQYRLDNVGVFTYSQEEGTIAAAM 346

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPW 434
            EQV E+VK ER   + +  R+  +  N   +G   +VL+E  G   G  VGR    +P 
Sbjct: 347 PEQVAEDVKQERYKSIMRVQRKIVLEKNKERIGFSYKVLVE--GCNNGVYVGRGYMYAPE 404

Query: 435 LQSVVL--NSKNHNIGDIIKVRITDVKISTLYGELV 468
           +  ++   + K  + G ++ V+I  VK   L GE +
Sbjct: 405 IDGLIYFTSDKPLDAGQMVYVKIKGVKDYDLTGEAI 440


>gi|148263556|ref|YP_001230262.1| MiaB-like tRNA modifying enzyme [Geobacter uraniireducens Rf4]
 gi|146397056|gb|ABQ25689.1| MiaB-like tRNA modifying enzyme [Geobacter uraniireducens Rf4]
          Length = 444

 Score =  198 bits (503), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 133/443 (30%), Positives = 224/443 (50%), Gaps = 19/443 (4%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRI- 87
           + + GC++N ++S  M +     G++ +   D AD+ V+NTC +  +   +    + R  
Sbjct: 14  ITTLGCKINQFESAAMSEALGKDGFQVIPFDDVADIYVINTCTVTSRTDAESRRLIRRAS 73

Query: 88  RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147
           R   ++RI        VV GC AQ   EE L   P VN+++G      +  LL+    G+
Sbjct: 74  RQNPSARI--------VVTGCYAQVAFEE-LSDMPGVNLILGNSEKKGIAALLKEIGDGR 124

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
           +V+ +D S E       +     + +    AFL +Q GCD FC++C+VPY RG   S  L
Sbjct: 125 QVLVSDISREKDAGGAQLESFAEHTR----AFLQVQNGCDAFCSYCIVPYARGRSRSVPL 180

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV-RLRYT 266
            + +   R     G  E+ L G ++  +   GLD         +   +E + LV R+R  
Sbjct: 181 DEALAGIRTFAAQGFKEVVLTGIHLGGY---GLDLTPPLTLLDILIAAEKQQLVERIRVG 237

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
           +  P ++SD LI       ++ P+LH+P+QSG+D++L  MNR++ A  +R++++++    
Sbjct: 238 SVEPTEVSDALIAFLAGSKLVCPHLHIPLQSGNDQVLSRMNRKYAANLFREVVEKLVCAL 297

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           PDI I +D I GFPGE+ ++F      ++ +  A    F +SPR GTP + M + V  +V
Sbjct: 298 PDICIGTDIITGFPGESAEEFEQGYRFLESLPVAYFHVFPFSPRTGTPAATMGDHVRSSV 357

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHN 446
             ER   L+K   E++ ++    +G+ + VLI+   +E G L G S     V +   +  
Sbjct: 358 IKERAKALRKLSEEKKKAYYRTFLGKELPVLIQNR-EENGMLKGLSRNYMPVFVKGDDSL 416

Query: 447 IGDIIKVRITDVKISTLYGELVV 469
           I +  +VRIT V    + GE+V 
Sbjct: 417 INNEQRVRITGVVREEVKGEVVA 439


>gi|167766692|ref|ZP_02438745.1| hypothetical protein CLOSS21_01198 [Clostridium sp. SS2/1]
 gi|317497520|ref|ZP_07955839.1| MiaB-like tRNA modifying enzyme YliG [Lachnospiraceae bacterium
           5_1_63FAA]
 gi|167711629|gb|EDS22208.1| hypothetical protein CLOSS21_01198 [Clostridium sp. SS2/1]
 gi|291558365|emb|CBL37165.1| SSU ribosomal protein S12P methylthiotransferase
           [butyrate-producing bacterium SSC/2]
 gi|316895203|gb|EFV17366.1| MiaB-like tRNA modifying enzyme YliG [Lachnospiraceae bacterium
           5_1_63FAA]
          Length = 448

 Score =  198 bits (503), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 142/456 (31%), Positives = 232/456 (50%), Gaps = 39/456 (8%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ DS  M  +    GY   +    AD+IV+NTC     A E+  + +  +   
Sbjct: 7   SLGCDKNLVDSEVMLGLLTKHGYTLTDDETQADVIVINTCCFIHDAKEESINTILEMAQY 66

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
           K   +K      +VVAGC+A+   +EIL+  P ++ V+G  +Y  + E +  A       
Sbjct: 67  KEQNLK-----ALVVAGCLAERYKDEILKEIPEIDAVLGTTSYDSIVEAVNTA------- 114

Query: 151 DTDYSVEDKFERLSIVD---GGYNRKRGVT-----AFLTIQEGCDKFCTFCVVPYTRGIE 202
             + +  + FE    +D        +R VT     A+L I EGCDK C++C++P  RG  
Sbjct: 115 -LEENTGEHFEHYESIDYLPDNSEVERVVTTGNHMAYLKIAEGCDKRCSYCIIPKIRGRF 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            S  + ++++EA++L   GV E+ L+ Q    + GK L GEK     LL+ L +I+G+  
Sbjct: 174 RSVPMQELLNEAKRLASEGVKELVLVAQETTLY-GKDLTGEK-QLPLLLHELCKIEGIEW 231

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R    +P +++D LIK     + +  Y+ +P+Q   +RIL+ M RR +  +   +I ++
Sbjct: 232 IRLLYCYPEEITDELIKVIKTEEKVCNYIDMPIQHSENRILQRMGRRTSREDLVAVIKKL 291

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R   PDI I +  I GFPGE+ +D    M+ V++  + +   F YSP   T  +   +Q+
Sbjct: 292 RKEIPDITIRTTLITGFPGESQEDHEGLMNFVEECQFDRLGVFTYSPEEDTLAATFEDQI 351

Query: 383 DENVKAER---LLCLQKKLREQQVSFNDA--CVGQIIEVLIEKHGKEKGKLVGRS----P 433
           DE VK ER   L+ LQ     Q++S+      VG+ I+V++E +  E    VGRS    P
Sbjct: 352 DEEVKEERRDELMSLQ-----QEISYEHTQQLVGKTIKVMVEGYLFEDDIYVGRSYMDAP 406

Query: 434 WLQS-VVLNSKNHNI-GDIIKVRITDVKISTLYGEL 467
            +   V +NS    + GD + V+IT  +   + GE+
Sbjct: 407 KVDGCVFINSPEELMTGDFVYVKITQGREYDVIGEV 442


>gi|160915875|ref|ZP_02078083.1| hypothetical protein EUBDOL_01897 [Eubacterium dolichum DSM 3991]
 gi|158432351|gb|EDP10640.1| hypothetical protein EUBDOL_01897 [Eubacterium dolichum DSM 3991]
          Length = 433

 Score =  198 bits (503), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 142/446 (31%), Positives = 226/446 (50%), Gaps = 34/446 (7%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ DS +M  M  S  +E V+    A+ I++NTC     A E+  + + ++   
Sbjct: 7   SLGCSKNLVDSEKMMGMLVSGQHELVSDPAQAEAIIINTCGFINSAKEEAIATIFKMAEY 66

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
           K  + K      ++V GC+AQ   E +    P ++ V+  + Y  L E+L      K ++
Sbjct: 67  KKDKCKR-----LIVVGCLAQRYKETLEEEIPEIDAVISIREYPHLHEIL------KELL 115

Query: 151 DT-DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209
           D  D    DK ER           R  TA+L I EGC   CT+C +P  RG  +S  +  
Sbjct: 116 DEHDLVSYDKCERKV-------SSRPWTAYLKIAEGCSNRCTYCAIPLIRGDNVSFPMED 168

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE-KCTFSDLLYSLSEIKGLVRLRYTTS 268
           +V EA++L   GV E+ L+ Q+   +   GLD   K +  +LL  L EI+G   +R    
Sbjct: 169 LVKEAKQLAQRGVKELVLIAQDTTKY---GLDRYGKLSLLELLKQLHEIEGFHWIRILYM 225

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
           +P ++ D LI+    L  ++PY  +P+Q  ++R+LK+MNRR T  E  ++ ++IR+   +
Sbjct: 226 YPDEIEDELIEGMARLPKVLPYFDIPMQHANNRMLKAMNRRGTKEEVLRLCEKIRNTFEN 285

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
             + + FIVGFP ET D F   M+ V+ + + +  +F YSP   TP  +M + V E  K 
Sbjct: 286 PTLRTTFIVGFPSETHDHFNELMEFVNDVHWDRMGAFPYSPEEDTPAFDMEQDVSEEEKQ 345

Query: 389 ERLLCLQKKLREQQVSFND--ACVGQIIEVLIEKHGKEKGKLVGR----SP-WLQSVVLN 441
            RL   Q  LR++++S  +    +GQ+IEVL+E      G   GR    +P  +  +V+ 
Sbjct: 346 RRL--EQLMLRQEEISLQNQQKMIGQVIEVLVEDQEGLSGLYRGRGKSSAPDEVDGIVIF 403

Query: 442 SKNHNI--GDIIKVRITDVKISTLYG 465
             +  I  G  +KVR+T+     L G
Sbjct: 404 KSDRFIPYGSFVKVRVTEAFPHDLKG 429


>gi|238926969|ref|ZP_04658729.1| 2-methylthioadenine synthetase [Selenomonas flueggei ATCC 43531]
 gi|238885203|gb|EEQ48841.1| 2-methylthioadenine synthetase [Selenomonas flueggei ATCC 43531]
          Length = 442

 Score =  198 bits (503), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 143/455 (31%), Positives = 230/455 (50%), Gaps = 37/455 (8%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEK-VYSFLGRIRN 89
           S GC  N+ D+  M  +    G +  N   +AD++++NTC   + A E+ + + LG    
Sbjct: 7   SLGCAKNLVDTEVMLGIMREHGIDITNEPSEADILIVNTCAFIQSAKEESITTVLGMADY 66

Query: 90  LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149
            +  R +      ++VAGC+ Q  G+++L   P  + ++G   + R+ E++E    G+R+
Sbjct: 67  KETGRCRS-----LIVAGCLGQRYGQQLLDEIPEADAIIGTGAWSRIMEVIEETLKGRRL 121

Query: 150 V-----DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
           +     DT Y    K  RL             TA++ I EGCD  C FC +P  RG   S
Sbjct: 122 LIAGKDDTIYDA--KTPRLRTTPH-------YTAYVKIAEGCDHRCAFCAIPLIRGGFRS 172

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG-EKCTFSDLLYSLSEIKGLVRL 263
           R +  +V E ++L +NGV E+ L+ Q+   +   GLD   +     LL +L++I G+  +
Sbjct: 173 RPMEDIVAEGQELAENGVRELVLIAQDSANY---GLDRYHEPMLPMLLRALAKIDGIAWI 229

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R   S+P+  +D LI+       ++ Y+ LP+Q   D +L+SMNR  T  +  ++I ++R
Sbjct: 230 RVLYSYPKYFTDELIEVFATEPKVVKYVDLPLQHAHDAVLRSMNRPDTRADIEKLIGKLR 289

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           +  P +AI S FIVGFPGETD  ++     V+K  + +   F YS    TP + M ++V 
Sbjct: 290 TRIPGVAIRSTFIVGFPGETDAQYQTLRRFVEKQRFDKVGIFTYSEEEDTPAAAMGKKVS 349

Query: 384 ENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRS----PWL 435
           E V  ER   L+ LQ K+ E+    N     Q ++VLIE H  E+ G  VGRS    P +
Sbjct: 350 EEVMQERYHDLMSLQSKISEE---INIGLERQELDVLIEGHDAEQSGIAVGRSYREAPEV 406

Query: 436 --QSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
             Q  +        G+I++VR+       + GE V
Sbjct: 407 DGQIYIEGDAESAPGEIVRVRLLQGFTYDIVGERV 441


>gi|297516710|ref|ZP_06935096.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Escherichia
           coli OP50]
          Length = 209

 Score =  197 bits (502), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 102/217 (47%), Positives = 145/217 (66%), Gaps = 13/217 (5%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS +M D+   + GY+  +  ++AD+++LNTC IREKA EKV+  
Sbjct: 3   KKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTDVAEEADVLLLNTCSIREKAQEKVFHQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK    ++  DL++ V GCVA  EGE I +R+  V+++ GPQT +RLPE++   
Sbjct: 63  LGRWKLLK----EKNPDLIIGVGGCVASQEGEHIRQRAHYVDIIFGPQTLHRLPEMINSV 118

Query: 144 RFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           R G R  VVD  +   +KF+RL        R  G TAF++I EGC+K+CT+CVVPYTRG 
Sbjct: 119 R-GDRSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTYCVVPYTRGE 172

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK 238
           E+SR    ++ E  +L   GV E+ LLGQNVNAWRG+
Sbjct: 173 EVSRPSDDILFEIAQLAAQGVREVNLLGQNVNAWRGE 209


>gi|225387767|ref|ZP_03757531.1| hypothetical protein CLOSTASPAR_01537 [Clostridium asparagiforme
           DSM 15981]
 gi|225046128|gb|EEG56374.1| hypothetical protein CLOSTASPAR_01537 [Clostridium asparagiforme
           DSM 15981]
          Length = 491

 Score =  197 bits (502), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 136/422 (32%), Positives = 221/422 (52%), Gaps = 49/422 (11%)

Query: 33  GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92
           GC++N Y++  M+    ++GYE V     AD+ ++NTC +   A  K    L R + +  
Sbjct: 10  GCKVNAYETEAMQQQLEARGYEIVPFDQKADVYIINTCSVTNIADRKSRQMLHRAKKMNP 69

Query: 93  SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR---- 148
                  D +VV AGC  Q   +  L+    V+++VG     RL ++L+    G R    
Sbjct: 70  -------DSVVVAAGCYVQVAAD-ALKEDAAVDIIVGNNQKARLADILDEFFSGGREDVS 121

Query: 149 -VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
            VVD  ++  +++E L  VD   +R R   AF+ +Q+GC++FC++C++PY RG   SR  
Sbjct: 122 YVVDISHT--NEYEALH-VDRIADRTR---AFIKVQDGCNQFCSYCIIPYARGRVRSRRP 175

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS------------------- 248
            +V++E R L   G  E+ L G +++++   GLD E    +                   
Sbjct: 176 EEVLEEVRTLAAQGYKEMVLTGIHLSSY---GLDFENPESALIAGDYKAEENALYRPWLL 232

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
            L+  +S ++G+ R+R  +  PR ++         +  L P+ HL +QSG D  LK MNR
Sbjct: 233 RLIQEVSGVEGIGRIRLGSLEPRIITREFAAELAKIPKLCPHFHLSLQSGCDATLKRMNR 292

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
            +   EYR+    +R    + AI++D IVGFPGET+++F AT   ++++ + +   FKYS
Sbjct: 293 HYNTEEYRERCGILREAFDNPAITTDVIVGFPGETEEEFAATRQYLEQVHFYEMHVFKYS 352

Query: 369 PRLGTPGSNMLEQVDENVKAER---LLCLQKKL-REQQVSFNDACVGQIIEVLIEKHGKE 424
            R GT  + M +QV E VKAER   LL L+K++ RE +  F    VG + E+L+E+  + 
Sbjct: 353 RREGTRAAVMPDQVPEPVKAERSDKLLELEKRMSREYRQGF----VGTVQEILLEEPAET 408

Query: 425 KG 426
            G
Sbjct: 409 GG 410


>gi|291295449|ref|YP_003506847.1| MiaB-like tRNA modifying enzyme YliG [Meiothermus ruber DSM 1279]
 gi|290470408|gb|ADD27827.1| MiaB-like tRNA modifying enzyme YliG [Meiothermus ruber DSM 1279]
          Length = 458

 Score =  197 bits (502), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 143/457 (31%), Positives = 231/457 (50%), Gaps = 48/457 (10%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC   + DS ++     +QGYE   +  +AD++V+NTC     A E+  + +G     
Sbjct: 9   SLGCPKALVDSEQILSRLRAQGYETSPTYQEADVVVVNTCGFITPAVEESLTAIGEA--- 65

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               + E G   V+V GC+  A  E I +  P V  V GP    R+   ++R      VV
Sbjct: 66  ----LSENGK--VIVTGCLG-ARPEVIQQAHPQVLEVTGPGEVDRVLAAVQR------VV 112

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
             +   ++ F  L         +    A+L I EGC+  C+FC++P  RG++ SR  +++
Sbjct: 113 PLE---QNPFTALVPPQVKLTPRH--YAYLKIAEGCNHKCSFCIIPKLRGLQQSRDAAEI 167

Query: 211 VDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYSLSEIKGLVR 262
           + EA +L+  G  E+ ++ Q+ +A+      R     G+  +    DL+  L+ +   +R
Sbjct: 168 LFEATRLVGTGTKELLVIAQDTSAYGVDIRHRTSDYAGKQVRAHLVDLVNELAGLGAWLR 227

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           L Y   +P       + A G L   +PYL +P+Q  S R+L++M R   A  + + I   
Sbjct: 228 LHYVYPYPHVRDLIPLMAEGKL---LPYLDVPLQHASPRVLRAMRRPGGAESHLKTIQEW 284

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R++ PD+AI S FIVGFPGET++DF   +D + +    +   F YS   G   +++   V
Sbjct: 285 RAIAPDLAIRSSFIVGFPGETEEDFELLLDFIAEARLDRVGCFTYSEVEGADANSLPGAV 344

Query: 383 DENVKAE---RLLCLQKKLREQQVSF--NDACVGQIIEVLIEKHGKEKGKLVGRS----P 433
            + VK E   RL+ LQ     QQ+S   N A +GQ +EV+++ +G+  G +VGRS    P
Sbjct: 345 PQEVKEERRARLMALQ-----QQISLEKNQARLGQTLEVIVDDYGELPGLVVGRSRYDAP 399

Query: 434 WLQSVVLNSKNHN--IGDIIKVRITDVKISTLYGELV 468
            +  +V    +    IGDII+VRIT  +   L+GE+V
Sbjct: 400 GIDGLVYAETDGTVKIGDIIQVRITQAEAYDLHGEMV 436


>gi|255282411|ref|ZP_05346966.1| MiaB protein [Bryantella formatexigens DSM 14469]
 gi|255266995|gb|EET60200.1| MiaB protein [Bryantella formatexigens DSM 14469]
          Length = 454

 Score =  197 bits (502), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 130/426 (30%), Positives = 214/426 (50%), Gaps = 45/426 (10%)

Query: 33  GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92
           GC++N Y++  M+ M  ++GYE V     AD+ V+NTC +   A  K    L R + +  
Sbjct: 12  GCKVNAYETEAMQQMLQARGYEIVPFDGPADVYVINTCTVTNIADRKSRQMLHRAKKMNP 71

Query: 93  SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE---RARFGKRV 149
             +       VV AGC AQA GEE L     V++V+G      L ++LE   + R G R 
Sbjct: 72  QAV-------VVAAGCYAQAAGEE-LAGDTAVDIVIGNNRKKDLADILEEYEQERTGCRS 123

Query: 150 VDT----------------------------DYSVEDKFERLSIVDGGYNRKRGVTAFLT 181
            +                             D +   ++E LSI     + +    A++ 
Sbjct: 124 CEQEQADGCGQEQECEQAGCREQERAACHLQDVAHAPEYETLSISRTAEHTR----AYIK 179

Query: 182 IQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD 241
           +Q+GC++FC++C++PY RG   SR L+ V+ E   L +NG  E+ L G +++++  +  D
Sbjct: 180 VQDGCNQFCSYCIIPYARGRIRSRELADVLAEVSTLAENGYQEVVLTGIHLSSYGKEKDD 239

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
           G       L+ ++ E++G+ R+R  +  PR +++   +   +L  + P+ HL +QSG D 
Sbjct: 240 G--IGLLQLIEAVHEVEGIRRIRLGSLEPRIITEEFAERLSELPKICPHFHLSLQSGCDA 297

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
            LK MNR +T  EY +    +R    D A+++D IVGFPGET+++F  T   ++K+ + +
Sbjct: 298 TLKRMNRHYTTEEYYEKCVLLRRYFDDPALTTDVIVGFPGETEEEFAQTCAFLEKVKFYE 357

Query: 362 AFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKH 421
              FKYS R GT  + M  QV E +K ER   LQ+  +     +     G+  EVL E+ 
Sbjct: 358 THIFKYSRRKGTKAAAMENQVPEEIKNERSKVLQELNKRNMAQYEALFHGRRAEVLFEEK 417

Query: 422 GKEKGK 427
             + G+
Sbjct: 418 TVKDGR 423


>gi|260436076|ref|ZP_05790046.1| conserved hypothetical protein [Synechococcus sp. WH 8109]
 gi|260413950|gb|EEX07246.1| conserved hypothetical protein [Synechococcus sp. WH 8109]
          Length = 458

 Score =  197 bits (502), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 137/453 (30%), Positives = 232/453 (51%), Gaps = 40/453 (8%)

Query: 33  GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCH-IREKAAEKVYSFLGRIRNLK 91
           GC+ N  D+  M  +    GY       DA ++V+NTC  I++   E V + +G      
Sbjct: 16  GCEKNRVDTEHMVGLLAEAGYGVSTDERDAAVVVVNTCSFIQDAREESVRTLVG------ 69

Query: 92  NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVD 151
              + E G  L++ AGC+AQ   EE+L   P    +VG   Y  + ++L+R   G+RV  
Sbjct: 70  ---LAEQGKELII-AGCLAQHFQEELLESIPEAKAIVGTGDYQHIVDVLQRVEAGERV-- 123

Query: 152 TDYSVEDKFERLSIVDGGYNRKRG---VTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
              S    F    + D    R+R      AFL + EGCD  C FC++P  RG + SR + 
Sbjct: 124 NQVSAVPTF----VGDEHLPRQRTTDQAVAFLKVAEGCDYRCAFCIIPKLRGDQRSRPIE 179

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK-GLVRLRYTT 267
            +V EA +L + GV E+ L+ Q    + G  L G K   ++LL +L +++   +R+ Y  
Sbjct: 180 SIVAEAHQLAEQGVQELILISQITTNY-GLDLYG-KPKLAELLRALGDVEIPWIRVHY-- 235

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
           ++P  ++  ++ A+ ++  ++PYL LP+Q     +L++MNR   A    +++D+IR   P
Sbjct: 236 AYPTGLTPDVLAAYREVPNVVPYLDLPLQHSHPEVLRAMNRPWQADVNDRLLDQIRDQLP 295

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
           D  + +  IVGFPGET++ F+  M  +++  +     F +SP  GT  + + ++VD  V 
Sbjct: 296 DAVLRTTLIVGFPGETEEHFQHLMGFLERQRFDHVGVFTFSPEDGTAAAELPDRVDPEVA 355

Query: 388 AER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVV- 439
             R   L+ LQ+ + E++   N   VG+ ++VLIE+H  + G+++GR    +P +   V 
Sbjct: 356 QARKDALMALQQPISEER---NSRWVGRTVDVLIEQHNPQTGEMIGRCARFAPEVDGEVR 412

Query: 440 ----LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                + +    G ++ V IT   I  L G +V
Sbjct: 413 VQPGADDQQAAPGSLVPVEITGADIYDLSGRIV 445


>gi|255994803|ref|ZP_05427938.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Eubacterium saphenum ATCC
           49989]
 gi|255993516|gb|EEU03605.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Eubacterium saphenum ATCC
           49989]
          Length = 484

 Score =  197 bits (502), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 123/402 (30%), Positives = 212/402 (52%), Gaps = 15/402 (3%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  + + F S+GYE  +   D D+ ++N+C +   A +KV   + ++R  
Sbjct: 49  TLGCKVNQYETRAVAEKFSSRGYEVTSGTKDVDIAIINSCSVTSMAEKKVRQAIRKMR-- 106

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
                +E  D ++ V GC  Q +G   L+ S   NV++G ++   + E +E+    + V+
Sbjct: 107 -----RENPDSVIAVMGCYPQRDGGAALK-SLGCNVIIGNESKLGIVEKVEKFLKEQSVI 160

Query: 151 D--TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
              TD +    FE +        RKR   A++ IQ+GCD++CT+C++ + RG   S+ + 
Sbjct: 161 IDVTDINRCKTFENIQATCDIDGRKR---AYIKIQDGCDRYCTYCIIAHVRGQVRSKKVD 217

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
            + +EA+KL+++G  EI L G N   +      G   +  D++  +S I G  R+R  + 
Sbjct: 218 DIYEEAKKLVEDGYREIVLTGINTALYGEDLHQGIGKSMVDVINKISTIPGDFRIRIGSL 277

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
            P  ++   I    +L  L  + HL VQSGS+ +L +M R +T  EY  I+D +R    +
Sbjct: 278 EPTVVNKEYINLIKNLPKLCRHAHLSVQSGSNDVLAAMGRNYTREEYIDIVDMLRDAHGN 337

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
             IS+D IVGFPGE++ DF  ++ LV+KI + +   F+YS R GTP +     + E +K 
Sbjct: 338 YGISTDIIVGFPGESEKDFEQSLMLVEKIPFTKVHIFRYSERAGTPAAGFKNMIKEEIKT 397

Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG 430
            R+  L    ++    F++  +G    V+ E   KE+G   G
Sbjct: 398 RRMKELSTIAKDSMRRFHELNMGDRRGVIFEM--KEEGAYTG 437


>gi|297624233|ref|YP_003705667.1| MiaB-like tRNA modifying enzyme YliG [Truepera radiovictrix DSM
           17093]
 gi|297165413|gb|ADI15124.1| MiaB-like tRNA modifying enzyme YliG [Truepera radiovictrix DSM
           17093]
          Length = 450

 Score =  197 bits (502), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 137/455 (30%), Positives = 231/455 (50%), Gaps = 43/455 (9%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC   + DS R+     ++GY  V S D+A+++V+NTC     A E+  + +G     
Sbjct: 9   SLGCPKALVDSERILTQLRAEGYRVVPSYDEAEVVVVNTCGFITPAVEESLNAIGEALAH 68

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
                       V+V GC+ +   E+I+ R P V  V G      +   + R      V+
Sbjct: 69  TGK---------VIVTGCLGE-RPEKIMARHPSVLAVTGQADVAGVMAAVHR------VL 112

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
             D   ++ F  L    G     R  + +L I EGC+  C FC++P  RG+++SR   +V
Sbjct: 113 PPD---DNPFTSLVPPQGVKLTPRHYS-YLKIAEGCNHKCAFCIIPQLRGLQVSRDAGEV 168

Query: 211 VDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGEKCT--FSDLLYSLSEIKGLVR 262
           + EA +L+ +G  E+ ++ Q+ +A+      R     G +       L+  LS++   VR
Sbjct: 169 LYEAYRLVASGTKELLVIAQDSSAYGVDLRHRESAFQGRQVAAHLVPLVRELSDMGAWVR 228

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           L Y   +P       + A G L   +PYL +P+Q  S ++L++M R   A  + + I   
Sbjct: 229 LHYVYPYPHVRELIPLMAEGKL---LPYLDVPLQHASPKVLRAMRRPGGAESHLKTIRAW 285

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+V P++AI S FIVGFPGET++DF   +D + +    +  +F YS   G   +   +QV
Sbjct: 286 RAVCPELAIRSTFIVGFPGETEEDFEQLLDFLQEARLERVGAFTYSEVPGAVANGFPDQV 345

Query: 383 DENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWL 435
            E VK E   RL+ +Q+++  ++   N A VG+++EV+++ +G+  G++VGR+    P +
Sbjct: 346 PEAVKQERFDRLMAVQQRISLEK---NQAKVGRVLEVIVDDYGELPGEVVGRTKADAPGI 402

Query: 436 QSVVLNSKNHN--IGDIIKVRITDVKISTLYGELV 468
              VL + +    IGDI++V++T      L GE+V
Sbjct: 403 DGTVLATGDGTTKIGDIVRVKVTGATAYDLSGEVV 437


>gi|148240542|ref|YP_001225929.1| 2-methylthioadenine synthetase [Synechococcus sp. WH 7803]
 gi|238066625|sp|A5GNW7|RIMO_SYNPW RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|147849081|emb|CAK24632.1| 2-methylthioadenine synthetase [Synechococcus sp. WH 7803]
          Length = 468

 Score =  197 bits (502), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 141/454 (31%), Positives = 231/454 (50%), Gaps = 42/454 (9%)

Query: 33  GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCH-IREKAAEKVYSFLGRIRNLK 91
           GC+ N  D+  M  +    GY   +    A+++V+NTC  I+E   E V + +G      
Sbjct: 26  GCEKNRVDTEHMLGLLSEAGYGVSSDESVANVVVVNTCSFIQEAREESVRTLVG------ 79

Query: 92  NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV-- 149
              + E G  L++ AGC+AQ   EE+L   P    +VG   Y  + E+LER   G+RV  
Sbjct: 80  ---LAEQGKELII-AGCLAQHFQEELLESLPEAKAIVGTGDYQHIVEVLERVEAGERVNR 135

Query: 150 -VDTDYSVEDKFERLSIVDGGYNRKRG-VTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
              T   V D  ERL       +R  G   A+L + EGCD  C FC++P+ RG + SR +
Sbjct: 136 VSSTPTFVAD--ERLP-----RHRTTGEAVAYLKVAEGCDYRCAFCIIPHLRGNQRSRPI 188

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK-GLVRLRYT 266
             +V EA +L   GV E+ L+ Q    + G  L G +   +DLL +L +++   +R+ Y 
Sbjct: 189 ESIVAEAHQLAAEGVKELILISQITTNY-GLDLYG-RPRLADLLQALGDVEIPWIRVHY- 245

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
            ++P  +++ +I A+ D+  ++PYL LP+Q     +L++MNR   A    +++D+IRS  
Sbjct: 246 -AYPTGLTNEVISAYRDVPNVLPYLDLPLQHSHPDVLRAMNRPWQADVNERLLDQIRSQL 304

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           P+  + +  IVGFPGET + F      +++  +     F +SP  GT  + +   VD ++
Sbjct: 305 PEAVLRTTLIVGFPGETQEQFEHLAGFLERQQFDHVGVFTFSPEQGTAAAELPNPVDADI 364

Query: 387 ---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVV 439
              + +RL+ LQ+ +     + N   VG+ ++ LIE+H  E G ++GR    +P +   V
Sbjct: 365 ALARKDRLMTLQQPI---SAAANARWVGRTVDALIEQHNPETGAMIGRCARFAPEVDGEV 421

Query: 440 -----LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                 +      G +I V+IT   I  L  E+V
Sbjct: 422 HIAPRADGLQAAPGTMIPVQITGSDIYDLRAEIV 455


>gi|157364894|ref|YP_001471661.1| MiaB-like tRNA modifying enzyme YliG [Thermotoga lettingae TMO]
 gi|238066616|sp|A8F8W3|RIMO_THELT RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|157315498|gb|ABV34597.1| MiaB-like tRNA modifying enzyme YliG [Thermotoga lettingae TMO]
          Length = 430

 Score =  197 bits (501), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 139/448 (31%), Positives = 226/448 (50%), Gaps = 30/448 (6%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           +K  GC  N  D   +E +   +G+E V+ +++A+ ++++TC   E A ++    +    
Sbjct: 5   IKVLGCPKNEADCDVLEAILKDRGHEIVSDIEEAEAVIIDTCGFIESAKKESIDEIITFA 64

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
           N K  R        + V GC+ Q   +E+ +  P V+  +G  + +++ E +E+A     
Sbjct: 65  NYKKYR-----PFFLCVKGCLVQRYSKELSKEIPEVDSWLGVLSPHQIAEAIEKA----- 114

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
              T Y VE   +   + +          A++ I +GCD+ CTFC +P  +G   SRS+ 
Sbjct: 115 ---TPYLVE---KPTVVYEEAPRSCNNSFAYVKIADGCDRSCTFCSIPLFKGRFKSRSIE 168

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYTT 267
            +  E  +L++ GV EI L+ Q+  A+   G+D   K     LL  L+ I+G  R+R   
Sbjct: 169 SIYSEVERLVEIGVKEIILVAQDTTAY---GVDLYNKAVLDQLLKKLNSIEGNFRIRVMY 225

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
            HP  ++D +I A   LD L+PY  +PVQ GSDRILK M R   + +  ++I  IRS  P
Sbjct: 226 LHPDHLTDKMIDAICSLDKLLPYFDIPVQHGSDRILKQMGRIKNSEQLLELIAYIRSHNP 285

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
           D AI +  +VGFPGET+DDF+  +D ++K  + +   F YS   GT  S+M  +V E + 
Sbjct: 286 DAAIRTSVMVGFPGETNDDFQKLLDFLEKAKFDRLGCFIYSDEEGTVSSSMKRKVSERIA 345

Query: 388 AER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK----EKGKLVGRSPWLQSVVL 440
            ER   LL  Q ++  +++      VG+ + VLIE+  +     +  L       +  V 
Sbjct: 346 RERYENLLIFQSQIAYERLK---RFVGKNLNVLIEQENELFYVARSHLDAPEVDGEVTVK 402

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
            ++  +I     VRITD     L GEL+
Sbjct: 403 KTREVDIPGYYTVRITDSDEYDLKGELI 430


>gi|228967379|ref|ZP_04128413.1| hypothetical protein bthur0004_41810 [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228792305|gb|EEM39873.1| hypothetical protein bthur0004_41810 [Bacillus thuringiensis
           serovar sotto str. T04001]
          Length = 386

 Score =  197 bits (501), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 121/368 (32%), Positives = 208/368 (56%), Gaps = 14/368 (3%)

Query: 95  IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDY 154
           +++  D ++ V GC AQ    EI+   P V++VVG Q   ++   +E  R  ++ ++   
Sbjct: 1   MRQNPDAVICVTGCYAQTSPAEIMA-IPGVDIVVGTQDREKMLGYIEEFRKERQPINVVR 59

Query: 155 SVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVD 212
           ++     +E L   D  Y   R   A L IQEGC+ FCTFC++P+ RG+  SR   +V+ 
Sbjct: 60  NIMKTRVYEEL---DVPYFTDR-TRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIK 115

Query: 213 EARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKGLVRLRYTTSHPR 271
           +A++L+D G  EI L G +   +   G D +    + LL  + +E+ GL RLR ++    
Sbjct: 116 QAQQLVDAGYKEIVLTGIHTGGY---GEDIKDYNLAGLLRDMEAEVGGLKRLRISSIEAS 172

Query: 272 DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAI 331
            +SD +I+     +V++ +LH+P+QSGS+ +LK M R++T   +++ +DR++   P +AI
Sbjct: 173 QISDEVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAI 232

Query: 332 SSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERL 391
           +SD IVGFPGET+++F  T + + +  +++   F YS R GTP + M +QV E+VK +R+
Sbjct: 233 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVKNDRV 292

Query: 392 LCLQKKLREQQVSFNDACVGQIIEVLIE---KHGKEKGKLVGRSPWLQSVVLNSKNHNIG 448
             L +   +    +  A  G+++E++ E   K G  +G  VG +     +V       IG
Sbjct: 293 HRLIELSNQLAKEYASAFEGEVLEIIPEEQFKDGDREGLYVGYTDNYLKIVFEGSEELIG 352

Query: 449 DIIKVRIT 456
            ++KV+IT
Sbjct: 353 KLVKVKIT 360


>gi|220928129|ref|YP_002505038.1| MiaB-like tRNA modifying enzyme YliG [Clostridium cellulolyticum
           H10]
 gi|219998457|gb|ACL75058.1| MiaB-like tRNA modifying enzyme YliG [Clostridium cellulolyticum
           H10]
          Length = 446

 Score =  197 bits (501), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 138/462 (29%), Positives = 235/462 (50%), Gaps = 37/462 (8%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + ++  + S GC  N+ DS  M  M     YE VNS +DAD++++NTC   E A ++  +
Sbjct: 1   MKKKIGIVSLGCPKNLVDSEIMLGMLSHSDYEIVNSKEDADVLIVNTCGFIESAQQESIN 60

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +  +   K    +     +++V GC+A+   E+IL + P V+ V+G   Y  + E++  
Sbjct: 61  TILEMAEEKGRNCE-----VLIVTGCMAERYKEKILEQIPEVDAVLGTGNYKEIAEVINL 115

Query: 143 ARFGKRVV------DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
           A  G++ V      +TDY  E++   LS      + K  V  +L I EGCD  CT+C++P
Sbjct: 116 AYMGEKTVAYGKLDETDYLDEERV--LS------SSKHSV--YLKISEGCDNRCTYCIIP 165

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256
           + RG   SR +  +V EA  L   G  EI ++ Q+   + G  L G+K    +L+  +S+
Sbjct: 166 FLRGKYRSRKMESLVREAELLAGKGTKEIVIVAQDSTRY-GIDLYGKK-MLPELIRKISD 223

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           I G+  +R    +P ++ D LI        +  YL +P+Q  SDR+LK M RR T  E +
Sbjct: 224 ISGIEWVRLLYCYPEEIDDELINEIAINPKVCKYLDIPIQHASDRVLKQMGRRGTISEIK 283

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
           Q+++++R     I I +  IVGFPGET++DF   M  V +    +   F YS   GT  +
Sbjct: 284 QVLNKLREKVSGITIRTSLIVGFPGETEEDFEELMAFVKEFRLDRVGVFTYSKEEGTAAA 343

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQV----SFNDACVGQIIEVLIEKHGKEK----GKL 428
            M  Q+ +++K +R    QKK+ E Q       N +  G++ + +++    +     G+ 
Sbjct: 344 KMKNQIPKHIKIKR----QKKILELQNVISREINQSRNGKVYKTIVDGIADDGIFYYGRT 399

Query: 429 VGRSPWLQSVV--LNSKNHNIGDIIKVRITDVKISTLYGELV 468
              +P +  ++   + +  +IG  I VRI + +   L GE++
Sbjct: 400 YAEAPEIDGIIYFTSPEELSIGSFINVRILNTEDYDLIGEVI 441


>gi|12654747|gb|AAH01215.1| CDK5RAP1 protein [Homo sapiens]
 gi|325463933|gb|ADZ15737.1| CDK5 regulatory subunit associated protein 1 [synthetic construct]
          Length = 510

 Score =  197 bits (501), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 136/467 (29%), Positives = 229/467 (49%), Gaps = 74/467 (15%)

Query: 17  IVDQCIVPQR-FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREK 75
           ++D+ +  QR  ++++YGCQMNV D+     +    GY R +++ +AD+I+L TC IREK
Sbjct: 91  MMDELLGRQRKVYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCSIREK 150

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135
           A + +++ L +++ LK  R +    L + + GC+A+   EEIL R  +V+++ GP  Y  
Sbjct: 151 AEQTIWNRLHQLKALKTRRPRSRVPLRIGILGCMAERLKEEILNREKMVDILAGPDAYRD 210

Query: 136 LPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
           LP+LL  A  G++  +   S+++ +  +  V    +     +AF++I  GCD  C++C+V
Sbjct: 211 LPQLLAVAESGQQAANVLLSLDETYADVMPVQTSAS---ATSAFVSIMRGCDNMCSYCIV 267

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
           P+TRG E SR ++ +                                           L 
Sbjct: 268 PFTRGRERSRPIASI-------------------------------------------LE 284

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
           E+K L             S+ +++   + D +   +HLP QSGS R+L++M R ++   Y
Sbjct: 285 EVKKL-------------SEQVLQLIHERDNICKQIHLPAQSGSSRVLEAMRRGYSREAY 331

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
            +++  IR   P +++SSDFI GF GET++D   T+ L+ ++ Y   F F YS R  T  
Sbjct: 332 VELVHHIRESIPGVSLSSDFIAGFCGETEEDHVQTVSLLREVQYNMGFLFAYSMRQKTRA 391

Query: 376 SNML-EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSP 433
            + L + V E VK  RL  L    RE+    N   VG    VL+E   K     L GR+ 
Sbjct: 392 YHRLKDDVPEEVKLRRLEELITIFREEATKANQTSVGCTQLVLVEGLSKRSATDLCGRND 451

Query: 434 W-LQSVVLNSKNHNI-----------GDIIKVRITDVKISTLYGELV 468
             L+ +  +++  ++           GD + V+IT     TL G ++
Sbjct: 452 GNLKVIFPDAEMEDVNNPGLRVRAQPGDYVLVKITSASSQTLRGHVL 498


>gi|210633072|ref|ZP_03297639.1| hypothetical protein COLSTE_01547 [Collinsella stercoris DSM 13279]
 gi|210159226|gb|EEA90197.1| hypothetical protein COLSTE_01547 [Collinsella stercoris DSM 13279]
          Length = 445

 Score =  197 bits (501), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 142/467 (30%), Positives = 226/467 (48%), Gaps = 62/467 (13%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA-AEKVYSFLGRIRN 89
           + GC  N  D+ RM  +    GY  V   D AD +++NTC     A +E + + L     
Sbjct: 10  TLGCAKNEVDTDRMRSLLNGAGYNEVFEADQADAVIINTCSFLASATSESIETTLALAEE 69

Query: 90  LKNSRIKEG-GDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
                + EG  D  +V+ GCV    G ++            P+    LPE+    R  + 
Sbjct: 70  -----VAEGVRDTRIVMCGCVPSRYGADL------------PE---ELPEVAAFVRADE- 108

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGV--------------TAFLTIQEGCDKFCTFCV 194
                   ED    +S++DG    +R V               A++ I +GCD+FC+FC 
Sbjct: 109 --------EDGI--VSVMDGVLGVERDVLPHVPRIKRTVESAVAYVKISDGCDRFCSFCA 158

Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG---KGLDGEKCTFSDLL 251
           +PY RG   SRS   ++ E R+L+  GV EI L+GQ+   W     +G++G     + L+
Sbjct: 159 IPYIRGRYHSRSAEDIIAEVRELVAGGVREIVLIGQDTGIWGTDFTEGVEG-PANLAQLM 217

Query: 252 YSLSEI--KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
            ++SE      V +R     P  M+D LI A  D   ++PY+ +PVQ  + RILK+M+R 
Sbjct: 218 VAVSEAVRPANVWIRVLYLQPEGMTDELIAAIRDTPEVLPYIDIPVQHCNARILKAMHRS 277

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369
            +  E  ++  ++R+  P + I +  +VGFP ETDD+ +  +  +D+ G+     F YSP
Sbjct: 278 GSEEELTRLFAKLRAEIPGMVIRTTSLVGFPSETDDEAKQMLAFMDREGFDYTSVFPYSP 337

Query: 370 RLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE--KHGKEKGK 427
             GT  + M  QVDE+VK ER             +   A VG++ EV+++  +   E  +
Sbjct: 338 EEGTRAAAMDGQVDEDVKLERTQAAMDLAESLGFAATAAHVGEVAEVIVDGVEETDEGLE 397

Query: 428 LVGRSPWLQ------SVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           L+G + W Q      +V L++ +  +GDI++VR TD     L GE+V
Sbjct: 398 LIGHA-WFQAPDSDGAVHLDATDAAVGDILQVRFTDSFCYELIGEVV 443


>gi|147677631|ref|YP_001211846.1| 2-methylthioadenine synthetase [Pelotomaculum thermopropionicum SI]
 gi|238066433|sp|A5D2R3|RIMO_PELTS RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|146273728|dbj|BAF59477.1| 2-methylthioadenine synthetase [Pelotomaculum thermopropionicum SI]
          Length = 444

 Score =  197 bits (501), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 146/452 (32%), Positives = 228/452 (50%), Gaps = 29/452 (6%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCH-IREKAAEKVYSFLGRIRN 89
           S GC  N+ DS  M  +    GYE      +AD++++NTC  I +   E + + +   RN
Sbjct: 9   SLGCPKNLVDSEIMLGILKKAGYEITAREKEADVLIVNTCSFINDAKEESIRTIIELARN 68

Query: 90  LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149
             N R +      ++VAGC+AQ    E++   P ++ +VG      +   + R   G +V
Sbjct: 69  KINGRCRA-----ILVAGCLAQRYPAELMAEMPEIDGLVGTGQVPEIARAVRRVLEGGKV 123

Query: 150 VDTDYS--VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
           + T     + D +    +    Y      TA+L I EGCD  C++CV+P  RG   SR +
Sbjct: 124 LLTGSPGYLHDAYFPKVLATPPY------TAYLKIAEGCDNRCSYCVIPAVRGPFRSRRM 177

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
             ++ EA +L + GV E+ ++ Q+   + G  L G K     LL  L+ IKG V LR   
Sbjct: 178 EDIMSEAEELANKGVKELIIVAQDTTRY-GIDLYG-KPMLDALLEGLTGIKGPVWLRLLY 235

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
           ++P  ++D LI        +  YL +P Q  S+R+L+ MNRR +  E  +++ ++R+  P
Sbjct: 236 TYPSLITDDLIYLMAKSRKICRYLDIPFQHASNRVLQLMNRRGSKEEAARLVAKLRADIP 295

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
            I + + FIVGFPGET++DF+  +D + +  + +A  F YS   GT  + M  QV E VK
Sbjct: 296 GIVLRTTFIVGFPGETEEDFQELLDFMAEAKFDRAGVFTYSREEGTAAAEMPGQVPEEVK 355

Query: 388 A---ERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRS----PWLQSVV 439
               ER + LQ+++  Q+   N   VG++IEVL+E K  K +G   GRS    P +   V
Sbjct: 356 LLRRERAMMLQQEISLQK---NLKRVGEVIEVLVEGKSLKGRGMYTGRSEGDAPGIDGKV 412

Query: 440 LNSKNHNI--GDIIKVRITDVKISTLYGELVV 469
                 N+  GD  +V I       L GE V+
Sbjct: 413 FFKSGFNLQPGDFARVLIKGGTEYDLTGETVL 444


>gi|160892570|ref|ZP_02073360.1| hypothetical protein CLOL250_00099 [Clostridium sp. L2-50]
 gi|156865611|gb|EDO59042.1| hypothetical protein CLOL250_00099 [Clostridium sp. L2-50]
          Length = 438

 Score =  197 bits (501), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 140/455 (30%), Positives = 226/455 (49%), Gaps = 31/455 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +  + S GC  N+ DS  M  +    G+E  N   +A+ +V+NTC   + A E+  + + 
Sbjct: 2   KVLMVSLGCDKNLVDSEVMLGLLHKAGHEITNDEHEAEAVVINTCAFIKDAQEESINTII 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
               LK    K G    ++V GC++Q   ++IL   P ++ +VG   Y  + + +     
Sbjct: 62  EYGELK----KTGSLKKLIVTGCLSQRYKDDILAELPEIDTIVGAANYDAIVDAIGSEEE 117

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
              V D +Y  E        V G         A+L I EGC K CT+C +PY RG   S 
Sbjct: 118 HSFVTDINYMPE-------AVGGRIVTTGASMAYLKIAEGCGKMCTYCAIPYIRGKYRSI 170

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            + Q++  A++L   GV E+ L+ Q    + G  L GEK T   LL+ L +I+ +  +R 
Sbjct: 171 PMEQLLASAKELAAQGVKELILVAQETTLY-GVDLYGEK-TLPKLLHELCKIEEIQWIRL 228

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
              +P +++D LI    + + +  YL +P+Q   D +L+ M RR    +  ++I ++R  
Sbjct: 229 MYCYPEEITDELIDTIAEEEKVCHYLDIPIQHSEDPVLRRMGRRTCKKDIVELIAKLRIR 288

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            PDIAI +  I GFPGET+ D  A M+ V++  + +   F YSP  GTP ++   Q+ EN
Sbjct: 289 IPDIAIRTTLIAGFPGETEADHEALMEFVNESEFDRLGVFTYSPEEGTPAASFPNQI-EN 347

Query: 386 VKAER----LLCLQKKLREQQVSF--NDACVGQIIEVLIEKHGKEKGKLVGRS----PWL 435
             AE+    ++ LQ     Q+VS+  N   +G+ + VLIE +  E    VGR+    P +
Sbjct: 348 EVAEKWRDDIMALQ-----QEVSYDKNQELLGKSLTVLIEGYVAEDDVYVGRTYRDAPDV 402

Query: 436 QSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468
             +V     + +  G  ++VRITD     L GE++
Sbjct: 403 DGMVFVDAPYELMSGTFVQVRITDANEYDLTGEMI 437


>gi|116071448|ref|ZP_01468716.1| hypothetical protein BL107_04849 [Synechococcus sp. BL107]
 gi|116065071|gb|EAU70829.1| hypothetical protein BL107_04849 [Synechococcus sp. BL107]
          Length = 458

 Score =  197 bits (501), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 136/453 (30%), Positives = 231/453 (50%), Gaps = 40/453 (8%)

Query: 33  GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCH-IREKAAEKVYSFLGRIRNLK 91
           GC+ N  D+  M  +    GY      +DA ++V+NTC  I++   E V + +G      
Sbjct: 16  GCEKNRVDTEHMVGLLAEAGYGVSTDEEDASVVVVNTCSFIQDAREESVRTLVG------ 69

Query: 92  NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVD 151
              + E G  L++ AGC+AQ   EE+L   P    +VG   Y  + ++L+R   G+RV  
Sbjct: 70  ---LAEQGKELII-AGCLAQHFQEELLESIPEAKAIVGTGDYQHIVDVLQRVESGERV-- 123

Query: 152 TDYSVEDKFERLSIVDGGYNRKRG---VTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
              S    F    + D    R+R      A+L + EGCD  C FC++P  RG + SR + 
Sbjct: 124 NRVSAVPSF----VGDEHLPRQRTTDQAVAYLKVAEGCDYRCAFCIIPKLRGDQRSRPIE 179

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK-GLVRLRYTT 267
            +V EA +L + GV E+ L+ Q    + G  L G K   ++LL +L E++   +R+ Y  
Sbjct: 180 SIVAEAHQLAEQGVQELILISQITTNY-GLDLYG-KPKLAELLRALGEVEIPWIRVHY-- 235

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
           ++P  ++  ++ A+ D+  ++PYL LP+Q     +L++MNR   A    +++D+IR   P
Sbjct: 236 AYPTGLTPAVVAAYRDVPNVVPYLDLPLQHSHPDVLRAMNRPWQADVNERLLDQIREQLP 295

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
           D  + +  IVGFPGET++ F+     ++   +     F +SP  GT  +++  +VD +V 
Sbjct: 296 DAVLRTTLIVGFPGETEEHFQHLATFLETQRFDHVGIFTFSPEDGTAAADLPNRVDPDVA 355

Query: 388 AER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVVL 440
             R   L+ LQ+ +  ++   N   VG+ ++VLIE+H  + G+++GR    +P +   V 
Sbjct: 356 QARKDALMALQQPIAAER---NQRWVGKTVDVLIEQHNPQTGEMIGRCSRFAPEVDGEVH 412

Query: 441 -----NSKNHNIGDIIKVRITDVKISTLYGELV 468
                + +    G  + V+IT   I  L G +V
Sbjct: 413 VQPGDDGQQAAPGSFVPVKITGADIYDLTGHIV 445


>gi|225375407|ref|ZP_03752628.1| hypothetical protein ROSEINA2194_01032 [Roseburia inulinivorans DSM
           16841]
 gi|225212743|gb|EEG95097.1| hypothetical protein ROSEINA2194_01032 [Roseburia inulinivorans DSM
           16841]
          Length = 438

 Score =  197 bits (501), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 136/441 (30%), Positives = 230/441 (52%), Gaps = 39/441 (8%)

Query: 33  GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92
           GC++N Y++  M+ +  + GYE V   + AD+ V+NTC +   A  K    L + + +  
Sbjct: 13  GCKVNAYETEAMQQILENAGYEIVPFTEYADVYVVNTCSVTNMADRKSRQMLHKAKKM-- 70

Query: 93  SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR--FGK--R 148
                  D +VV AGC  Q +  E L     V++V+G    + L  +LE      GK   
Sbjct: 71  -----NPDAIVVGAGCYVQTKEAEALL-DDTVDIVIGNNKKHELLAMLEAYENDHGKCGN 124

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           V+D ++  ++  E        + R     AF+ +Q+GC++FC++C++P+ RG   SR+  
Sbjct: 125 VIDINHEKQEYEEMFLERTAEHTR-----AFIKVQDGCNQFCSYCIIPFARGRVRSRNSE 179

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK---GLVRLRY 265
            V+ E ++L ++G  EI L G +++++   G+D    T  +LL+ + E+    G+ R+R 
Sbjct: 180 DVIREVKRLAEHGFREIVLTGIHLSSY---GVD----TGDNLLHLIREVHNVDGIERIRL 232

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
            +  PR ++D    A   L  + P+ HL +QSG D  L+ MNRR+   EY +    +R  
Sbjct: 233 GSLEPRIVTDGFAAALAGLPKICPHFHLSLQSGCDATLQRMNRRYDTREYEEGCQILRKY 292

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
               AI++D IVGFPGET+++F  T + + +I + +   F+YS R GT  + M  QV E 
Sbjct: 293 FDHPAITTDVIVGFPGETEEEFAVTKEYLKRIHFYEMHIFQYSKREGTKAAVMEHQVPEP 352

Query: 386 VKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK--LVGRSPWLQSVVL 440
           VK ER   LL L+KK+ E+   F +  VG+ +  L+E+  + +G+    G +     + +
Sbjct: 353 VKKERSNILLALEKKMSEE---FREYYVGKQVTALMEEAYEFEGETYFTGYTKEYVKIAV 409

Query: 441 NS----KNHNIGDIIKVRITD 457
            S     N  +   I+ R+TD
Sbjct: 410 KSAADLSNQFVKGTIRGRLTD 430


>gi|319951674|ref|YP_004162941.1| miab-like tRNA modifying enzyme [Cellulophaga algicola DSM 14237]
 gi|319420334|gb|ADV47443.1| MiaB-like tRNA modifying enzyme [Cellulophaga algicola DSM 14237]
          Length = 442

 Score =  197 bits (501), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 132/427 (30%), Positives = 217/427 (50%), Gaps = 39/427 (9%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N  ++  +   F  +G++RV+  + AD+ V+NTC + E A ++  S + + +  
Sbjct: 9   TLGCKLNFSETSTIARNFQEEGFDRVDFSEHADMYVINTCSVTENADKRFKSIVKQAQ-- 66

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL---LERARFGK 147
                K   D  V   GC AQ + E+ L     V++V+G    +++ +    L +  FG+
Sbjct: 67  -----KVNPDAFVAAIGCYAQLKPED-LASVHGVDLVLGATEKFKITDYINDLSKNDFGE 120

Query: 148 ----RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
                +V+ D+ V           G Y       AFL +Q+GCD  CT+C +P  RGI  
Sbjct: 121 VHSCEIVEADFYV-----------GSYAIGDRTRAFLKVQDGCDYKCTYCTIPLARGISR 169

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK---CTFSDLLYSLSEIKGL 260
           S +L  V+  A+++    + EI L G N+  + GKG  G K    TF DL+ +L  I+G+
Sbjct: 170 SDTLQNVIKNAKEIASQDIKEIVLTGVNIGDY-GKGEFGNKKHEHTFYDLVEALDAIEGI 228

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            RLR ++  P  + +  I    D +  +P+ H+P+QSGSD ILK M RR+ +  Y   + 
Sbjct: 229 HRLRISSIEPNLLKNKTIDFVADSNSFVPHFHIPLQSGSDEILKLMRRRYLSGLYVDRVT 288

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           RI+ V P   I  D IVGFPGETD+ F  T   ++ +  +    F YS R  T  + M  
Sbjct: 289 RIKEVMPHACIGVDVIVGFPGETDELFLETYHFLNDLDISYLHVFTYSERDNTVAAEMDN 348

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG--------RS 432
            V +NV+++R   L+    +++ +F ++ +G +  VL E   KE G + G        ++
Sbjct: 349 VVSKNVRSKRSKMLRGLSAKKRRAFYESQIGSVRTVLFEGENKE-GYIHGFTENYVKVKA 407

Query: 433 PWLQSVV 439
           PW   +V
Sbjct: 408 PWNPELV 414


>gi|289578123|ref|YP_003476750.1| MiaB-like tRNA modifying enzyme [Thermoanaerobacter italicus Ab9]
 gi|289527836|gb|ADD02188.1| MiaB-like tRNA modifying enzyme [Thermoanaerobacter italicus Ab9]
          Length = 449

 Score =  197 bits (500), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 130/439 (29%), Positives = 238/439 (54%), Gaps = 19/439 (4%)

Query: 33  GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92
           GC++N Y++  M ++F   GYE V+  + AD+ V+NTC +  ++  K    + + R    
Sbjct: 23  GCKVNQYETEVMAELFKKAGYEVVDFDEKADVYVINTCTVTNRSDMKSRQEIRKAR---- 78

Query: 93  SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER--ARFGKRVV 150
              K+  + +VV  GC  Q   +++    P V++ +G +   ++ EL+E    +  K  V
Sbjct: 79  ---KKNPNAVVVAVGCYVQVSPKDVFS-LPEVDIAIGTKNKDKIVELVEEFTQKNQKLSV 134

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
             +   + ++E   +    Y  +    A++ IQ+GC+++CT+C++PY RG   SR   ++
Sbjct: 135 VNNIMTQKEYEEFEVT--AYTER--TRAYVKIQDGCNQYCTYCIIPYARGPVRSREPEKI 190

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270
           ++E R+  D+G  EI L G ++ ++   G D +     D++  + EI G+ R+R ++  P
Sbjct: 191 LEEVRRFADSGYKEIVLTGIHIASY---GKDLKNIGLLDIIKRIHEIDGIKRIRLSSIEP 247

Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330
             +++  +K    L  +  + H+ +QSG D  LK M RR+T  EY+ +IDR+R    D+A
Sbjct: 248 VFLTEEFVKEIAKLPKMCRHYHVSLQSGCDETLKRMGRRYTTKEYKSVIDRLRKYIKDVA 307

Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER 390
           I++D +VGFPGET+++F  T   V++I +++   FKYS R GT   +   QV  ++K +R
Sbjct: 308 ITTDVMVGFPGETEEEFFETYKFVEEICFSKMHVFKYSRRKGTRAYSFPNQVANHIKEDR 367

Query: 391 LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRSPWLQSVVLNSKNHNI-G 448
              L +  +  +  F ++ +G+ +EVL E+  K  KG + G +    SV +      +  
Sbjct: 368 SKKLIELSKRCEYKFMESFIGKTLEVLFEQPVKNMKGYVEGLTDNYLSVAVKGDIKLLRN 427

Query: 449 DIIKVRITDVKISTLYGEL 467
           +I  V+I + K + L GE+
Sbjct: 428 EIYPVKIKERKDNFLIGEI 446


>gi|254471140|ref|ZP_05084543.1| MiaB-like tRNA modifying enzyme [Pseudovibrio sp. JE062]
 gi|211960282|gb|EEA95479.1| MiaB-like tRNA modifying enzyme [Pseudovibrio sp. JE062]
          Length = 422

 Score =  197 bits (500), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 142/441 (32%), Positives = 222/441 (50%), Gaps = 52/441 (11%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V ++GC++N Y+S  M+    + G +        D +++NTC +  +A  +    + + R
Sbjct: 5   VVTFGCRLNAYESEVMKSEAEAAGLK--------DAVLINTCAVTNEAVRQARQTIRKTR 56

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK- 147
                  +E  +  ++V GC AQ E E        V++V+G        E LERA +G+ 
Sbjct: 57  -------RENPNARIIVTGCAAQTEAETFAEMGE-VDLVLGNS------EKLERASYGRV 102

Query: 148 -----------RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
                      RV D   SV +    L  +DG   R R   AF+ +Q GCD  CTFC++P
Sbjct: 103 AQFGIEETEKVRVNDI-MSVRETAGHL--IDGLEGRSR---AFVQVQNGCDHRCTFCIIP 156

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256
           Y RG   S  +  V+D+ ++L+DNG  EI L G ++ ++ G  L GE    +     L  
Sbjct: 157 YGRGNSRSVPMGVVIDQIKRLVDNGYGEIVLTGVDITSY-GADLPGEPKLGTLCAKILKL 215

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           I  L RLR ++    +  D L++       LM +LHL +Q+G + ILK M RRH+  +  
Sbjct: 216 IPDLKRLRLSSIDSIEADDELMEVIAHDHRLMSHLHLSLQAGDNMILKRMKRRHSREDTI 275

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
           +  + +R +RPD+   +D I GFP ETD+ F  T+ +VD+ G      F +SPR GTP +
Sbjct: 276 RFCEDVRKMRPDVVFGADIIAGFPTETDEMFENTLRIVDECGLTHLHVFPFSPRPGTPAA 335

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQ 436
            M  Q+D  +  ER   L+ K +E  ++   A VG+  E+LIE+ G      +GR+    
Sbjct: 336 RM-PQLDRKIIKERAARLRIKGQEALLAHLRAEVGKKREILIEREG------LGRTEQFT 388

Query: 437 SVVLNSKNHNI-GDIIKVRIT 456
            V L++   NI G ++  RIT
Sbjct: 389 QVELDA---NIAGSLVSARIT 406


>gi|56751603|ref|YP_172304.1| hypothetical protein syc1594_d [Synechococcus elongatus PCC 6301]
 gi|56686562|dbj|BAD79784.1| hypothetical protein [Synechococcus elongatus PCC 6301]
          Length = 429

 Score =  197 bits (500), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 135/419 (32%), Positives = 219/419 (52%), Gaps = 35/419 (8%)

Query: 62  ADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRS 121
           AD++V+NTC   + A E+       +R L    + E G   +V+AGC+AQ   +++L   
Sbjct: 19  ADVVVVNTCSFIQAAREE------SVRTL--VELAESGKK-IVIAGCLAQHFQDQLLAEL 69

Query: 122 PIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT---A 178
           P    +VG   Y+R+ ++L+R   G+RV     S E  F    I D    R R  T   A
Sbjct: 70  PEAIALVGTGDYHRIVDVLQRTESGERV--NAISQEPSF----IADENLPRYRTTTSAVA 123

Query: 179 FLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK 238
           +L + EGCD  C FC++P+ RG   SRS+  +V EA++L   GV E+ L+ Q    +   
Sbjct: 124 YLRVAEGCDYRCAFCIIPHLRGKRRSRSIESIVAEAKQLAAEGVQELVLISQITTNY--- 180

Query: 239 GLDGE-KCTFSDLLYSLSEIK-GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQ 296
           GLD   K   ++LL  L ++    +R+ Y  ++P  ++  +I A  +   ++PYL LP+Q
Sbjct: 181 GLDRYGKPMLAELLRQLGQVDVPWIRIHY--AYPTGLTPEVIAAIRETHNVLPYLDLPLQ 238

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
                ILK+MNR        +II++++   PD  + + FI GFPGET++ FR     + +
Sbjct: 239 HSHPEILKAMNRPWQGNVNDRIIEKLKEALPDAVLRTTFIAGFPGETEEHFRHLQQFIQR 298

Query: 357 IGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER---LLCLQKKLREQQVSFNDACVGQI 413
             +     F +SP  GT   ++   V ++VK  R   L+  Q+ + E++   N A +G++
Sbjct: 299 HEFDHVGVFAFSPEEGTAAIDLPNPVPDDVKEARRDALMATQQPIAERR---NRAQIGRL 355

Query: 414 IEVLIEKHGKEKGKLVGRS----PWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           ++VLIE+     G  +GRS    P +  VV    +  +G ++ VRITD  I  L+GE+ 
Sbjct: 356 VDVLIEQEHPSTGLKIGRSARFAPEVDGVVYVQGDAALGQLVTVRITDADIYDLHGEVA 414


>gi|78043523|ref|YP_360009.1| putative tRNA modifying protein [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|123770593|sp|Q3ACX5|RIMO_CARHZ RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|77995638|gb|ABB14537.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 438

 Score =  197 bits (500), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 134/449 (29%), Positives = 226/449 (50%), Gaps = 20/449 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           ++F+ S GC  N  DS  +  +  S+GY R  + +++DL+++NTC     A E+    + 
Sbjct: 2   KYFILSLGCTKNQADSEVIMGILESKGYVRSLNPEESDLLIVNTCGFIAAAIEESIEEIL 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            + +LK    K      ++VAGC+ Q EG+E+ +  P V++   P+    L +LL     
Sbjct: 62  NLVHLKKPGQK------ILVAGCLVQREGKELAKHLPEVDLFFTPREINNLDKLLADLGE 115

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
             ++V ++         L++      +   V  ++ I +GCD  CT+C +P  RG   SR
Sbjct: 116 NNKLVLSEPGF------LNLEKKPRAKSNEVYRYIKIADGCDNRCTYCTIPAIRGKYTSR 169

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            L  +++E +  +  G+ EI L+ Q+  A+ G  L GE     +LL  +  IKG   +R 
Sbjct: 170 PLDDILEEIKDTLKQGIKEIILVAQDTTAY-GIDLYGE-FKLVELLRKIGSIKGNFWVRL 227

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
              +P  ++  LI    +   ++ Y+ +P+Q     ILK M R+ ++ E    ++R+R  
Sbjct: 228 MYLYPDKITPELINEIKENPKVIKYVDVPLQHIHPEILKKMGRKGSSEEIISTLERLRKE 287

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            PDI I + FIVGFPGET++ F   +D V K  + +  +F Y    GTP + M  Q+ + 
Sbjct: 288 IPDITIRTTFIVGFPGETEEQFNYLLDFVKKFKFNRLGAFPYYREKGTPAAKMKGQIPKK 347

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSV--V 439
           VK +R   L +  +E  ++ N A VG+ I V++EK  + +   +GR+    P +  +  +
Sbjct: 348 VKEQRYEKLMEVQQEISLNLNKALVGKKIPVIVEKKIRGENLYLGRTYMDAPEIDGIIEI 407

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
              K    G II V ITD  I  L GE +
Sbjct: 408 KAEKRLKKGQIINVLITDYDIYDLKGEFI 436


>gi|150016098|ref|YP_001308352.1| MiaB-like tRNA modifying enzyme YliG [Clostridium beijerinckii
           NCIMB 8052]
 gi|238065361|sp|A6LSR6|RIMO_CLOB8 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|149902563|gb|ABR33396.1| MiaB-like tRNA modifying enzyme YliG [Clostridium beijerinckii
           NCIMB 8052]
          Length = 465

 Score =  196 bits (499), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 141/452 (31%), Positives = 242/452 (53%), Gaps = 34/452 (7%)

Query: 31  SYGCQMNVYDS-LRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRN 89
           S GC  N  DS + +  M  S  YE  N+  +AD+I++NTC   E A ++    +  + N
Sbjct: 29  SLGCDKNRVDSEIILGKM--SDEYEITNNPKNADIIIVNTCGFIESAKQESIDTILEMAN 86

Query: 90  LK-NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
            K N + K     L++  GC+ Q  GEE+    P +++++G   Y ++ E++     G +
Sbjct: 87  YKINYKCK-----LLIATGCLTQRYGEELKTLIPEIDIMLGVNDYNKINEIITEFIDGNK 141

Query: 149 VVDT--DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           +     +YS E+  E   I+       +  +A++ I EGC+ FCT+C++P  RG   SR 
Sbjct: 142 LATELLNYSDENINEGKRII-----TTQRESAYIRIAEGCNNFCTYCIIPKIRGKFRSRK 196

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
           +  +++EAR L ++GV EI L+ Q+   + G  + G+K     LL  LS+I+G+  +R  
Sbjct: 197 MENIINEARDLSESGVKEIILIAQDTTLY-GSDIYGKK-NLHVLLKELSKIEGIEWIRVL 254

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
             +P ++ D LI      + ++ YL +P+Q  SD+ILK M R+ +    + II++I+ +R
Sbjct: 255 YCYPEEIYDELINEIACNEKVVKYLDIPIQHISDKILKLMGRKTSK---KDIINKIQILR 311

Query: 327 ---PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              P+I I + FIVGFP ETD+DF   +D + +    +  +F YS    TP + M  Q+D
Sbjct: 312 ERVPEIVIRTTFIVGFPNETDEDFNEIIDFLKEYKLEKVGAFTYSQEEDTPAAKMDGQID 371

Query: 384 ENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE--KGKLVGRSPWLQSV 438
           E +K +R   L+ LQK + E+    N   +G++ ++L+E +  +   G+    +P + + 
Sbjct: 372 EEIKEKREEDLMLLQKNISEE---INKLKIGKLYDILVEGYNGKCYYGRSYEMAPDIDAN 428

Query: 439 VLNSKNHNI--GDIIKVRITDVKISTLYGELV 468
           VL   N  I  G+ +KV+I +     L G +V
Sbjct: 429 VLFESNAKIENGEFVKVKIVETMDYDLVGVVV 460


>gi|258511959|ref|YP_003185393.1| MiaB-like tRNA modifying enzyme [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
 gi|257478685|gb|ACV59004.1| MiaB-like tRNA modifying enzyme [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
          Length = 471

 Score =  196 bits (499), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 148/454 (32%), Positives = 225/454 (49%), Gaps = 45/454 (9%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N YD+  +   F  +GY +V     AD+ V+NTC +      K        R +
Sbjct: 8   TLGCKVNFYDTEGIWQTFKRRGYTQVPFDSVADVYVVNTCTVTHTGDRKS-------RQM 60

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR-- 148
               ++   D +VVV GC AQ   +EI R    V++VVG     ++ + +E A   +R  
Sbjct: 61  IRRAVRTNPDAVVVVTGCYAQIAPDEIARIQG-VDLVVGNDQKSKIVDHVE-AVLAERKP 118

Query: 149 -VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
            +   +     +F+ L   D  Y  +R   A L IQ+GC+ FCTFC++P  RG+  SR  
Sbjct: 119 YLAVGNIMQATEFDEL---DVPYFEERS-RANLKIQDGCNNFCTFCIIPRARGLIRSRKP 174

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
             VV +A KL   G  EI L G +     G G D E    +DLL  L  I    R+R ++
Sbjct: 175 ENVVLQATKLARAGYREIVLTGIHTG---GYGEDFENYRLADLLLDLERIDLPFRIRISS 231

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
               ++ D L+        ++P+LH+P+Q+GSD +L+ M+R +T  EY + +  +R   P
Sbjct: 232 IEASEIDDRLMDVLAASKKVVPHLHIPLQAGSDPVLRRMHRHYTTAEYAEKLRELRRRLP 291

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
           D+A+++D IVGFPGETD+ F  T   V   GYAQ   F YSPR GT      +QV E+VK
Sbjct: 292 DLAVTTDVIVGFPGETDEQFGETYAFVRAQGYAQLHVFPYSPRRGTAAYKFKDQVPEDVK 351

Query: 388 ---AERLLCLQKKLREQQVSFNDACVGQIIEVLIE--------------KHGKEKGK-LV 429
                R++ L   LR+   ++  + VG+ +EV+ E               H  E  + LV
Sbjct: 352 RARVARMIALGDDLRQ---AYAASFVGRELEVIAESPLASADDEARRAYSHLPEASRMLV 408

Query: 430 GRSPWLQSVVLNSKN-----HNIGDIIKVRITDV 458
           G       V   + +       IG++I+VR+T V
Sbjct: 409 GYDGHYLRVAFEAPSDVPLESMIGEVIRVRMTGV 442


>gi|229829112|ref|ZP_04455181.1| hypothetical protein GCWU000342_01197 [Shuttleworthia satelles DSM
           14600]
 gi|229792275|gb|EEP28389.1| hypothetical protein GCWU000342_01197 [Shuttleworthia satelles DSM
           14600]
          Length = 449

 Score =  196 bits (499), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 134/448 (29%), Positives = 229/448 (51%), Gaps = 26/448 (5%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ DS  M       G+   +S ++AD+I++NTC   E A E+    +     L
Sbjct: 9   SLGCDKNLVDSEHMLSRLHRDGFSMTDSEEEADIIIVNTCAFIESAKEESIETI-----L 63

Query: 91  KNSRIKEGGDLLVVVA-GCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG--- 146
           + +  KE G L  ++A GC++Q    +I  + P V+ V+G  +Y  +  +L     G   
Sbjct: 64  QMAAYKEKGRLKALLATGCLSQRYARQIREQIPEVDGVLGTNSYDDIVPVLHAVLDGLPQ 123

Query: 147 -KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            +     D   +++  RL    G Y       A+L I EGCDK C++C++P  RG   S 
Sbjct: 124 TRIDDLDDLPDDEEAGRLLTTAGHY-------AYLKIAEGCDKHCSYCIIPKLRGSYRSV 176

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            + +++ EAR+L+  GV E+ L+ Q    + G  L G K    +LL  L++I+GL  +R 
Sbjct: 177 PMIKLIKEARELVSQGVRELILVAQETTLY-GSDLYGRK-MLPELLDKLNDIEGLRWIRI 234

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
             ++P ++   LI+A    D ++ Y+ +P+Q G D IL+ M RR    + R+ +  +R  
Sbjct: 235 LYAYPEEIDQELIQAMVRNDKVLHYIDMPIQHGDDEILRRMGRRTNQDDIRKKVAMLREA 294

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            PDIAI +  I GFPGETD   +  +D +D++ + +  +F YS    TP ++   Q+D+ 
Sbjct: 295 MPDIAIRTTVICGFPGETDQMHQNLLDFIDEMQFDRLGAFAYSQEEDTPAASFAGQLDQK 354

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVLN 441
           VK  RL  + +K ++   + N++ VG  +E +IE    ++   VGR+    P +   +  
Sbjct: 355 VKEARLARVMEKQQKINFAMNESLVGSDLEAIIEGKIADEPAYVGRTYRDAPDVDGYIFV 414

Query: 442 SKNHNI---GDIIKVRITDVKISTLYGE 466
           S  +++   GD++   ++      L GE
Sbjct: 415 SGENDVFHTGDLVMTHVSGAYEYDLIGE 442


>gi|257784586|ref|YP_003179803.1| MiaB-like tRNA modifying enzyme YliG [Atopobium parvulum DSM 20469]
 gi|257473093|gb|ACV51212.1| MiaB-like tRNA modifying enzyme YliG [Atopobium parvulum DSM 20469]
          Length = 468

 Score =  196 bits (499), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 131/454 (28%), Positives = 220/454 (48%), Gaps = 33/454 (7%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC  N  D+ RM  +  + G+  V   + AD+ ++NTC     A E+       I   
Sbjct: 20  TLGCAKNEVDTDRMRALLLASGFGEVADPESADVAIINTCSFLASATEESIETTLEIAEG 79

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
            +  +++   L +++ GCV    G E+  + P V   V        P   E       +V
Sbjct: 80  ASEGVRK---LPIIMCGCVPSRYGAELNEQLPEVAAFV--------PADQEDGIV--SIV 126

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
               ++ +  + +    G      G +AF+ I EGCD+FC FC +PY RG   SR   ++
Sbjct: 127 ADVLNIPEPTQSIVAAHGMLRTIDGASAFVKISEGCDRFCAFCAIPYIRGHYHSRPAEEI 186

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGL----DGEKCTFSDLLYSLSEI----KGLVR 262
           + E ++L+D GV E+ L+GQ+   W G  +    DG+  T + L+  ++E+    KG +R
Sbjct: 187 LQEVKELMDGGVREVILIGQDTGIW-GSDMPDTEDGQTPTLAKLMQKVAEVVRSYKGWIR 245

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           + Y    P  M+D LI    D   ++PY+ +P+Q  ++RILK M R  +  E R++ DR+
Sbjct: 246 VLYL--QPEGMTDELISTIRDTPEVLPYIDIPIQHCNERILKRMGRSGSIQELRKLFDRL 303

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           RS  P + + +  + GFPGETD++     D + +  +     F YSP  GT G+ M +QV
Sbjct: 304 RSEIPGMVLRTTGMCGFPGETDEESDELYDFIQEQEFDYTSVFTYSPEEGTLGAKMSDQV 363

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE--KHGKEKGKLVGRSPWLQSVVL 440
            + VK ER   L   + +   +     VG+  EV+I+  +   E  +L+G + W Q+   
Sbjct: 364 PDEVKIERTQRLLDLVEQLGFAATARHVGERCEVIIDGIEESDEGTELIGHT-WFQAPDC 422

Query: 441 NSKNH------NIGDIIKVRITDVKISTLYGELV 468
           +   H      ++GDI+   + D     + GE+V
Sbjct: 423 DGAVHIAEGEASVGDIVLCDLVDSFCYEMIGEIV 456


>gi|33866726|ref|NP_898285.1| Fe-S oxidoreductase [Synechococcus sp. WH 8102]
 gi|81573837|sp|Q7U477|RIMO_SYNPX RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|33639327|emb|CAE08709.1| possible Fe-S oxidoreductase [Synechococcus sp. WH 8102]
          Length = 464

 Score =  196 bits (498), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 135/453 (29%), Positives = 234/453 (51%), Gaps = 40/453 (8%)

Query: 33  GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCH-IREKAAEKVYSFLGRIRNLK 91
           GC+ N  D+  M  +    GY    + +DA ++V+NTC  I++   E V + +G      
Sbjct: 22  GCEKNRVDTEHMVGLLAQAGYGVSTNENDAAVVVVNTCSFIQDAREESVRTLVG------ 75

Query: 92  NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVD 151
              + E G  L++ AGC+AQ   +E+L   P    +VG   Y  + E+L+R   G+RV  
Sbjct: 76  ---LAEQGKELII-AGCLAQHFQDELLESIPEAKAIVGTGDYQHIVEVLQRVEAGERV-- 129

Query: 152 TDYSVEDKFERLSIVDGGYNRKRG---VTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
              S    F    + D    R+R      AFL + EGCD  C FC++P  RG + SR + 
Sbjct: 130 NRVSAVPTF----VGDEHLPRQRTTDQAVAFLKVAEGCDYRCAFCIIPKLRGDQRSRPIE 185

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK-GLVRLRYTT 267
            +V EA +L++ GV E+ L+ Q    + G  L G K   ++LL +L E++   +R+ Y  
Sbjct: 186 SIVAEAHQLVEQGVQELILISQITTNY-GLDLYG-KPKLAELLRALGEVEIPWIRVHY-- 241

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
           ++P  ++  ++ A+ ++  ++PYL LP+Q     +L++MNR   A    +++D+IR   P
Sbjct: 242 AYPTGLTPEVLAAYREVPNVVPYLDLPLQHSHPEVLRAMNRPWQADVNDRLLDQIRDQLP 301

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
           D  + +  IVGFPGET++ F+  M+ + +  +     F +SP  GT  + +   VD +V 
Sbjct: 302 DAVLRTTLIVGFPGETEEHFQHLMEFLRRQRFDHVGVFTFSPEDGTAAAELPNPVDPDVA 361

Query: 388 AER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVVL 440
             R   L+ LQ+ +  ++   N + V + ++VLIE+H  + G+++GR    +P +   V 
Sbjct: 362 QARKDALMALQQPISAER---NHSWVSRTVDVLIEQHNPQTGQMIGRCARFAPEVDGEVH 418

Query: 441 -----NSKNHNIGDIIKVRITDVKISTLYGELV 468
                + +    G ++ V+IT   +  L G +V
Sbjct: 419 VQPGEDGQKAAPGTMVPVQITGADVYDLSGRIV 451


>gi|56205139|emb|CAI19392.1| CDK5 regulatory subunit associated protein 1 [Homo sapiens]
 gi|119596728|gb|EAW76322.1| CDK5 regulatory subunit associated protein 1, isoform CRA_e [Homo
           sapiens]
          Length = 510

 Score =  196 bits (498), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 136/467 (29%), Positives = 228/467 (48%), Gaps = 74/467 (15%)

Query: 17  IVDQCIVPQR-FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREK 75
           ++D+ +  QR  ++++YGCQMNV D+     +    GY R +++ +AD+I+L TC IREK
Sbjct: 91  MMDELLGRQRKVYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCSIREK 150

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135
           A + +++ L +++ LK  R +    L + + GC+A+   EEIL R  +V+++ GP  Y  
Sbjct: 151 AEQTIWNRLHQLKALKTRRPRSRVPLRIGILGCMAERLKEEILNREKMVDILAGPDAYRD 210

Query: 136 LPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
           LP LL  A  G++  +   S+++ +  +  V    +     +AF++I  GCD  C++C+V
Sbjct: 211 LPRLLAVAESGQQAANVLLSLDETYADVMPVQTSAS---ATSAFVSIMRGCDNMCSYCIV 267

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
           P+TRG E SR ++ +                                           L 
Sbjct: 268 PFTRGRERSRPIASI-------------------------------------------LE 284

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
           E+K L             S+ +++   + D +   +HLP QSGS R+L++M R ++   Y
Sbjct: 285 EVKKL-------------SEQVLQLIHERDNICKQIHLPAQSGSSRVLEAMRRGYSREAY 331

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
            +++  IR   P +++SSDFI GF GET++D   T+ L+ ++ Y   F F YS R  T  
Sbjct: 332 VELVHHIRESIPGVSLSSDFIAGFCGETEEDHVQTVSLLREVQYNMGFLFAYSMRQKTRA 391

Query: 376 SNML-EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSP 433
            + L + V E VK  RL  L    RE+    N   VG    VL+E   K     L GR+ 
Sbjct: 392 YHRLKDDVPEEVKLRRLEELITIFREEATKANQTSVGCTQLVLVEGLSKRSATDLCGRND 451

Query: 434 W-LQSVVLNSKNHNI-----------GDIIKVRITDVKISTLYGELV 468
             L+ +  +++  ++           GD + V+IT     TL G ++
Sbjct: 452 GNLKVIFPDAEMEDVNNPGLRVRAQPGDYVLVKITSASSQTLRGHVL 498


>gi|167748881|ref|ZP_02421008.1| hypothetical protein ANACAC_03655 [Anaerostipes caccae DSM 14662]
 gi|317470277|ref|ZP_07929671.1| MiaB tRNA modifying enzyme YliG [Anaerostipes sp. 3_2_56FAA]
 gi|167651851|gb|EDR95980.1| hypothetical protein ANACAC_03655 [Anaerostipes caccae DSM 14662]
 gi|316902250|gb|EFV24170.1| MiaB tRNA modifying enzyme YliG [Anaerostipes sp. 3_2_56FAA]
          Length = 445

 Score =  196 bits (498), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 137/449 (30%), Positives = 227/449 (50%), Gaps = 28/449 (6%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ DS  M  +   +G+   N  ++AD+IV+NTC     A E+  + +  +   
Sbjct: 7   SLGCDKNLVDSEVMLGLLTERGHTLTNDEEEADVIVINTCCFIHDAKEESINTILEMAAY 66

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG---K 147
           K   +K      +VVAGC+++   +EIL   P ++ V+G  +Y  + E ++ A  G   +
Sbjct: 67  KEQNLK-----ALVVAGCLSERYKDEILEEIPEIDAVLGTTSYDSIVEAVDEALAGNGYE 121

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
                DY  ++   R  +  G +       A+L I EGCDK C++C++P  RG   S  +
Sbjct: 122 HYESIDYLPDNSGHRRLVTTGSH------MAYLKIAEGCDKRCSYCIIPKIRGRFRSVPM 175

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
            +++  AR+L  +GV E+ L+ Q    + GK L G+K     LL  L  ++G+  +R   
Sbjct: 176 KELLKSARELAASGVTELVLVAQETTLY-GKDLTGKK-ELPTLLKELCGVEGIEWIRLLY 233

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
            +P +++D LI+   + + ++ Y+ +P+Q  SD ILK M RR + ++   II ++R   P
Sbjct: 234 CYPEEITDELIRTIKEEEKVVNYIDMPIQHCSDGILKRMGRRTSKHDIETIIAKLRKEIP 293

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
           D+AI +  I GFPGET++      + V +  + +   F YSP   T  +    Q++E+VK
Sbjct: 294 DMAIRTTLITGFPGETEEQHEELKEFVRQQRFERLGVFTYSPEEDTKAAEFEGQIEEDVK 353

Query: 388 AER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVL 440
             R   L+ LQ+K+  +        VG+ I VLIE +  E    VGRS    P +   V 
Sbjct: 354 EARRDELMALQQKISYEHTH---EMVGKTIRVLIEGYLFEDDVYVGRSYMDAPKVDGCVF 410

Query: 441 NSKNHNI--GDIIKVRITDVKISTLYGEL 467
            +    +  GD + V+IT      L GE+
Sbjct: 411 VTSPEELLTGDYVYVKITKGNEYDLIGEM 439


>gi|331091338|ref|ZP_08340178.1| MiaB-like tRNA modifying enzyme [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330404499|gb|EGG84043.1| MiaB-like tRNA modifying enzyme [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 449

 Score =  196 bits (498), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 133/435 (30%), Positives = 240/435 (55%), Gaps = 30/435 (6%)

Query: 33  GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92
           GC++N Y++  M+++   +GYE V   + AD+ ++NTC +   A  K    L R + +  
Sbjct: 29  GCKVNAYETEAMQELLEKEGYEIVPFKEGADIYIINTCTVTNMADRKSRQMLHRAKKM-- 86

Query: 93  SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR-----FGK 147
                  + +VV AGC  QA+ E        +++++G      L  +L+  +       K
Sbjct: 87  -----NPNAIVVAAGCYVQAKSES-KETDESIDIIIGNNKKQDLISILKEYQEKHDGIQK 140

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
            ++D +++ E  +E L +     + +    A+L +Q+GC++FCT+C++PY RG   SR  
Sbjct: 141 EIIDINHTKE--YEELHLSKTAEHTR----AYLKVQDGCNQFCTYCIIPYARGRVRSREK 194

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
             VV E ++L+ NG  E+ L G +++++ G  L GE      L+ +++EI+GL R+R  +
Sbjct: 195 ENVVAEVKQLVANGYQEVVLTGIHLSSY-GVDLQGE--DLLSLILAVNEIEGLKRIRLGS 251

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
             PR +++   K    L+ + P+ HL +QSG +  LK MNRR+TA EY +  + +R    
Sbjct: 252 LEPRIITEEFAKTISGLEKICPHFHLSLQSGCNGTLKRMNRRYTAEEYFEKCELLRKYFD 311

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
           + A+++D IVGFPGET+++F  +   V+K+ + +   FKYS R GT  + M  QV E +K
Sbjct: 312 NPALTTDVIVGFPGETEEEFEESRAFVEKVNFYETHIFKYSRREGTKAAVMENQVPEQIK 371

Query: 388 AER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK--LVGRSPWLQSVVLNS 442
            +R   LL L ++ R++   + +  +G+ +EVL+E+  +++GK    G +     V L S
Sbjct: 372 TKRSNILLELDERKRKE---YEEKFIGKTVEVLMEEEVEKEGKRYQTGHTKEYIKVALES 428

Query: 443 KNHNIGDIIKVRITD 457
             +    ++K++I +
Sbjct: 429 DENMQNQLVKIKIDN 443


>gi|323140804|ref|ZP_08075720.1| ribosomal protein S12 methylthiotransferase RimO
           [Phascolarctobacterium sp. YIT 12067]
 gi|322414720|gb|EFY05523.1| ribosomal protein S12 methylthiotransferase RimO
           [Phascolarctobacterium sp. YIT 12067]
          Length = 441

 Score =  196 bits (498), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 141/452 (31%), Positives = 230/452 (50%), Gaps = 31/452 (6%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ DS  M  +   +  E  N   DA+LI++NTC   E A E+  S + ++   
Sbjct: 7   SLGCPKNLVDSEVMLGIIKDKQLEITNDPADAELIIVNTCGFIESAKEESISTILQMAQY 66

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
           K    +EG    +++ GC+ Q   +E+    P V+ +VG  ++  +  ++++   GKRV 
Sbjct: 67  K----EEGSCKYLIMTGCLGQRYADELFESMPEVDAIVGTDSFTDIGWVIDQVLAGKRVK 122

Query: 151 D----TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
                   +V+     L+  D          A+L I EGCD  C++C++P  RG   SR 
Sbjct: 123 HLQKLESKNVQTPPRMLTTPD--------YMAYLKIAEGCDNCCSYCIIPQLRGPYTSRP 174

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
             +V+ EAR L  +GV E+ ++ Q+   + G+ L G K     LL  L+E++G+  +R  
Sbjct: 175 YDEVMAEARSLAAHGVKELIVVAQDTTRY-GEDLIG-KLLLPQLLRDLNELEGIEWIRVM 232

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
             +P + +D LI A  + D +  Y+ +P+Q  SDR+L+SMNR  T  +  +++ ++R   
Sbjct: 233 YLYPNNFTDDLIAAFAECDKVCKYIDIPLQHASDRLLESMNRYDTRAQVEELLAKLRERI 292

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           P I I + FIVGFPGETD+DF   MD V+K  +  A  F+YS   GT    M  Q++  V
Sbjct: 293 PGITIRTTFIVGFPGETDEDFAELMDFVEKQRFENAGVFQYSQEEGTVAGAMENQIEPEV 352

Query: 387 KAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL-VGRS----PWLQSV 438
           K  R   L+ LQ  + E+    +     + ++V++E   +E   L VGRS    P +   
Sbjct: 353 KENRYHELMALQAGISEE---IHQEREDEELDVIVEGFDEENPALAVGRSYHEAPDIDGN 409

Query: 439 VL--NSKNHNIGDIIKVRITDVKISTLYGELV 468
           +   N+    +G +++VRI       +  ELV
Sbjct: 410 IFIENAAELEVGQMVRVRILQGFTYEMVAELV 441


>gi|331002891|ref|ZP_08326404.1| MiaB-like tRNA modifying enzyme [Lachnospiraceae oral taxon 107
           str. F0167]
 gi|330413184|gb|EGG92558.1| MiaB-like tRNA modifying enzyme [Lachnospiraceae oral taxon 107
           str. F0167]
          Length = 457

 Score =  196 bits (497), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 141/456 (30%), Positives = 234/456 (51%), Gaps = 49/456 (10%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  M+ +  + GY+ V   + AD+ ++NTC +   A  K    L R R +
Sbjct: 8   TLGCKVNTYETEAMQQLMENAGYKCVEFGERADVYIINTCSVTNIADRKSRQMLHRARKM 67

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL----PELLERARFG 146
                    D +VV AGC  ++   +I     I +++VG      +     E L+     
Sbjct: 68  NE-------DAIVVAAGCYVESAKNKIDEDLSI-DIIVGNNNKNEIVNIINEFLQNKSEN 119

Query: 147 KRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           K ++D +   E ++F    I D          AF+ +Q+GC++FC++C++P+TRG   SR
Sbjct: 120 KFIIDINKETEYEEFHIRKINDH-------TRAFIKVQDGCNQFCSYCIIPFTRGRVRSR 172

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAW-----------RGKGL------DGEKCTFS 248
            +  +++E R L  +G  EI L G +++++           R + L      D E  T +
Sbjct: 173 KMENIMEEVRNLAASGYKEIVLTGIHLSSYGLDFLDESYNKRMEKLTNTCESDEEFVTKN 232

Query: 249 DLL---YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
           DLL    +++ I G+ R+R  +  PR + +  IK+   ++   P+ HL +QSG D+ LKS
Sbjct: 233 DLLCLIENIAGIDGVERVRIGSLEPRIIKENFIKSLSKIEKFCPHFHLSLQSGCDKTLKS 292

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           MNR++TA E+ + +  IR      A+++D IVGFPGET  DF  +   V+K+ + +   F
Sbjct: 293 MNRKYTADEFFEGVKLIRKYFDSPAVTTDIIVGFPGETKKDFEESKKFVEKVKFYETHIF 352

Query: 366 KYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE----KH 421
            YS R GT  +NM  QVD N K +R   L +     Q  F  + +G+  E+L E    K 
Sbjct: 353 PYSIREGTKAANM-PQVDGNEKVKRANILNEININNQKEFKSSRIGKEDELLCEEIFIKD 411

Query: 422 GKEKGKLVGRSP-WLQSVVLNSKNHNIGDIIKVRIT 456
           G E     G +  +++  VLNS +++  DII+ RIT
Sbjct: 412 GVE--YFTGYTKEYIKVAVLNS-DYSTNDIIRGRIT 444


>gi|257468233|ref|ZP_05632329.1| 2-methylthioadenine synthetase [Fusobacterium ulcerans ATCC 49185]
 gi|317062515|ref|ZP_07927000.1| radical SAM domain-containing protein [Fusobacterium ulcerans ATCC
           49185]
 gi|313688191|gb|EFS25026.1| radical SAM domain-containing protein [Fusobacterium ulcerans ATCC
           49185]
          Length = 445

 Score =  196 bits (497), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 140/444 (31%), Positives = 230/444 (51%), Gaps = 31/444 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQ-GYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +F + S GC  N+ DS     +  ++ G+E  + + +AD+I++NTC     A ++    +
Sbjct: 2   KFALISLGCSKNLVDSENFIGILVNKRGFEVTSELGEADIIIVNTCGFIGDAKKESIETI 61

Query: 85  GRIRNLK-NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
             + +LK N  +K+     ++V GC+AQ    EIL+  P V+ V+G     ++ +++E  
Sbjct: 62  LEVSDLKINGNLKK-----IIVTGCLAQRYAGEILKELPEVDAVIGTGEIDKIEKVVEEI 116

Query: 144 RFGKRVVDT---DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
              KRVV++   D+    + +R+             TA+L I EGCD+ CT+C++P  RG
Sbjct: 117 LADKRVVESTKMDFLANSETDRVLTTASH-------TAYLKIAEGCDRRCTYCIIPQLRG 169

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
              SR++  ++ EA KL+ +GV E+ LL Q    + G  L  EK + + L+  L +I GL
Sbjct: 170 KLRSRTIEDILKEANKLVASGVKELNLLAQETTEY-GIDLYKEK-SLARLMKELVKIDGL 227

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
             LR     P  ++D LI    + D +  Y  +PVQ  SD IL+ M R  +    + I++
Sbjct: 228 KWLRTYYMFPDSLTDELIDVMKNEDKICKYFDIPVQHISDNILQQMGRAKSGDHIKGILN 287

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           RIR   PD  I +  IVGFPGET+++F      +++  +     FKYS    T   +M  
Sbjct: 288 RIRKEIPDAVIRTAVIVGFPGETEENFEELKAFIEEYKFDYVGVFKYSREEDTKAYDMEN 347

Query: 381 QVDENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-----KGKLVGRS 432
           QV E +K +R   +  LQ K+ E   S N   +GQI+EV+I+    E     +G+  G++
Sbjct: 348 QVPEEIKEKRWVEITNLQSKIAE---SKNRNMLGQIVEVMIDGVSTESEYLLEGRTKGQA 404

Query: 433 PWLQSVVL-NSKNHNIGDIIKVRI 455
             +   VL N      G+I+KV++
Sbjct: 405 LEIDGKVLTNDGTAKPGEIVKVKL 428


>gi|254432004|ref|ZP_05045707.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Cyanobium sp. PCC
           7001]
 gi|197626457|gb|EDY39016.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Cyanobium sp. PCC
           7001]
          Length = 467

 Score =  196 bits (497), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 142/462 (30%), Positives = 235/462 (50%), Gaps = 39/462 (8%)

Query: 24  PQRFFVKSY-GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           P++    S+ GC+ N  D+  M  +    GY       +A+++V+NTC   + A E+   
Sbjct: 10  PRKTIAFSHLGCEKNRVDTEHMLGLLAEAGYGVSADEGEANVVVVNTCSFIQDAREE--- 66

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
               +R L    + E G  L++ AGC+AQ   EE+L   P    +VG   Y  +  +LER
Sbjct: 67  ---SVRTLVE--LAEQGKELII-AGCLAQHFQEELLESLPEAKAIVGTGDYQHIVSVLER 120

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT---AFLTIQEGCDKFCTFCVVPYTR 199
              G+RV     S    F    + D    R R  +   A+L + EGCD  C FC++P  R
Sbjct: 121 VEAGERV--NQVSATPTF----VGDEHLPRYRTTSEAVAYLKVAEGCDYRCAFCIIPRLR 174

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK- 258
           G + SR +  +V EAR+L   GV E+ L+ Q    + G  L G K   ++LL +L+E++ 
Sbjct: 175 GDQRSRPIESIVAEARQLAAQGVKELVLISQITTNY-GLDLYG-KPRLAELLRALAEVEI 232

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
             +R+ Y  ++P  ++  ++ A+ ++  ++PYL LP+Q     +L++MNR   A     +
Sbjct: 233 PWIRVHY--AYPTGLTPEVLAAYREVPNVVPYLDLPLQHSHPDVLRAMNRPWQANVTGGL 290

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           + RIR   PD  + + FIVGFPGET++ F+  +D V +  +     F +SP  GTP + +
Sbjct: 291 LHRIREQLPDAVLRTTFIVGFPGETEEHFQHLLDFVAEQRFDHVGVFTFSPEDGTPAAEL 350

Query: 379 LEQVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR-SPW 434
            + V   + A   +RL+ +Q+ +     + N A VG+I++VLIE+     G+++GR S +
Sbjct: 351 PDAVAPELAAARKDRLMTVQQPI---AAARNQAWVGRIVDVLIEQENPATGEMLGRCSRF 407

Query: 435 LQSVVLNSKNHN--------IGDIIKVRITDVKISTLYGELV 468
              V    + H          G ++ VR+T      L GE+V
Sbjct: 408 APEVDGEVRVHPGPGGLCAAPGTMVPVRLTAADTYDLIGEVV 449


>gi|218248984|ref|YP_002374355.1| MiaB-like tRNA modifying enzyme YliG [Cyanothece sp. PCC 8801]
 gi|238065331|sp|B7JV66|RIMO_CYAP8 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|218169462|gb|ACK68199.1| MiaB-like tRNA modifying enzyme YliG [Cyanothece sp. PCC 8801]
          Length = 449

 Score =  196 bits (497), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 139/447 (31%), Positives = 224/447 (50%), Gaps = 29/447 (6%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCH-IREKAAEKVYSFLGRI 87
           +   GC+ N  DS  M  +    GY+   + + AD +++NTC  I+E   E V + +   
Sbjct: 9   ISHLGCEKNRIDSEHMLGLLAEAGYQIDGNEELADYVIVNTCSFIQEARQESVRTLV--- 65

Query: 88  RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147
             L  +  K      ++++GC+AQ   EE+L   P    +VG   Y  + ++++R   G+
Sbjct: 66  -ELAEANKK------IIISGCMAQHFQEELLEELPEAVAIVGTGDYQTIVDVVQRVENGE 118

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVT---AFLTIQEGCDKFCTFCVVPYTRGIEIS 204
           RV     S    F    I D    R R  T   A+L + EGCD  C FC++P+ RG + S
Sbjct: 119 RV--KAISTTPTF----IADESIPRYRTTTEGVAYLRVAEGCDYRCAFCIIPHLRGNQRS 172

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK-GLVRL 263
           RS+  +V EA++L D GV E+ L+ Q    + G  L GE    ++LL  L ++    VR+
Sbjct: 173 RSIESIVTEAQQLADQGVQELILISQITTNY-GLDLYGEP-KLAELLRELGKVDIPWVRI 230

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
            Y  ++P  ++  +I A  +   ++PYL LP+Q    +ILK+MNR         II+RI+
Sbjct: 231 HY--AYPTGLTSPIIAAIRETPNVLPYLDLPLQHSHPQILKTMNRPWQGQVNDSIIERIK 288

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              P+  + + FIVGFPGET++ F   ++ V +  +     F +S    TP   M  QV 
Sbjct: 289 EAIPEAVLRTTFIVGFPGETEEHFDHLVNFVQRHEFDHVGVFTFSAEEETPAYQMSPQVP 348

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVV 439
            ++  ER   L +  +   +  N  C+GQ + VLIE+   + G+L+GRS    P +  +V
Sbjct: 349 PDIAQERRNLLMEVQQPISIKKNQNCIGQTVPVLIEQENPQTGQLIGRSPRFAPEVDGLV 408

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGE 466
                  +  I+ V+IT   +  LYG+
Sbjct: 409 YVQGEAPLNTIVPVQITHADVYDLYGK 435


>gi|320159796|ref|YP_004173020.1| hypothetical protein ANT_03860 [Anaerolinea thermophila UNI-1]
 gi|319993649|dbj|BAJ62420.1| hypothetical protein ANT_03860 [Anaerolinea thermophila UNI-1]
          Length = 444

 Score =  196 bits (497), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 129/453 (28%), Positives = 232/453 (51%), Gaps = 22/453 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +RF++ S GC  N  DS  M  +    G+E  +   +AD++++NTC     A ++    L
Sbjct: 3   KRFYLVSLGCAKNTVDSQSMASLLQEAGFEPTDRQKEADVLIVNTCGFIGPARQES---L 59

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             +R+L   + K     L+V AGC+ +   +++ +  P ++ ++G + +  + +L+++ R
Sbjct: 60  DTLRDLARHKKKHQ---LLVAAGCLTERYRQQVAQEVPGIDGILGTRRWMDIVDLVQQLR 116

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRK--RGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            G++  +  Y + +    +   + G  R   +G +A+L I +GC + C FC +P  +G  
Sbjct: 117 PGRKYPEPLYHLPET-PTVGKDEKGVLRAAIQGASAYLKIADGCRRPCAFCAIPLIKGTA 175

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL---DGEKCTFSDLLYSLSEIKG 259
           +SR    ++ EAR L D GV E+ L+ Q+   + G  L   DG       +L    EI  
Sbjct: 176 VSRPPEVILQEARILQDEGVKELLLIAQDTTDY-GHDLGMKDGLATLLEGILREAPEIP- 233

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
            +R+ Y  ++P  ++D LI+   +   ++PYL +P+Q    + L+ M R        Q +
Sbjct: 234 WIRILY--AYPGYVTDRLIEVMANHPQIVPYLDMPLQHAHPQTLRRMRRPSNMEWVYQTL 291

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            ++R+  P++A+ + FIVG+PGET+++F+  +D V +I +     F +S   GT    + 
Sbjct: 292 AKMRAAIPNLALRTTFIVGYPGETEEEFQTLLDFVQEIQFDHVGIFTFSFEKGTASEPLG 351

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPW----L 435
           + +   VK ERL  L +      ++ N + VGQI  VLIE  G ++G  +GR+P     +
Sbjct: 352 DPIPAEVKQERLARLAEVQERVSLARNQSYVGQIQPVLIE--GFDRGIAIGRAPHDAPEI 409

Query: 436 QSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
             +V       +G+I+ VRIT      L G LV
Sbjct: 410 DGLVFVEGEAPVGEIVPVRITGAMTHDLTGVLV 442


>gi|33860662|ref|NP_892223.1| Fe-S oxidoreductase [Prochlorococcus marinus subsp. pastoris str.
           CCMP1986]
 gi|81576526|sp|Q7V3H3|RIMO_PROMP RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|33633604|emb|CAE18561.1| possible Fe-S oxidoreductase [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
          Length = 454

 Score =  196 bits (497), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 137/458 (29%), Positives = 238/458 (51%), Gaps = 50/458 (10%)

Query: 33  GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHI----REKAAEKVYSFLGRIR 88
           GC+ N+ D+  M+ +   +GYE  N ++DA+++V+NTC      RE++  K+  F  + +
Sbjct: 22  GCEKNLVDTEHMQGLLDKEGYEVGNDIEDANVVVVNTCSFIETAREESIRKIIEFTDQGK 81

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
                         V+VAGC+AQ   EE+L+  P +  +VG   Y ++ ++++R   G+ 
Sbjct: 82  E-------------VIVAGCMAQHFKEELLKEMPEIKGLVGTGDYQKIAKVIKRVEKGEI 128

Query: 149 VVDT----DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
           V +     ++  ++K  R   VD     K    A+L I EGCD  C FC++P  RG + S
Sbjct: 129 VNEVSKIPEFIADEKIPRF--VD-----KNKFVAYLRIAEGCDYKCAFCIIPKLRGPQRS 181

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK-GLVRL 263
           R +  +V EA+ L   G+ EI L+ Q +    G+ + G K + + LL  LS++    +R+
Sbjct: 182 RDIESIVSEAKNLAAQGIQEIILISQ-ITTNYGQDIYG-KPSLARLLKELSKVSVPWIRI 239

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
            Y  ++P  ++D +IK+  D + ++PY  LP+Q     +LKSMNR   A     I+ +IR
Sbjct: 240 HY--AYPTGLTDEVIKSFKDSNNIVPYFDLPLQHSHPDVLKSMNRPWQASLNESILSQIR 297

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              P   + +  IVGFPGE    F+  +D + +  +     F +SP  GT   ++  +V 
Sbjct: 298 EQIPSAVLRTSLIVGFPGENQKHFQHLLDFLHRHEFDHVGVFIFSPEEGTSAFDLPNRVP 357

Query: 384 ENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQ 436
             V   + + ++ +Q+ + +++   N   VG  I+VL+EK  + K +L+GRS    P + 
Sbjct: 358 SEVADARKDNIISIQQNISKKK---NQLYVGTTIKVLVEKISENK-ELIGRSYNFAPEID 413

Query: 437 -SVVLNSKNHN-----IGDIIKVRITDVKISTLYGELV 468
            +V+L+ KN+      IG  ++  I       LYGE++
Sbjct: 414 GNVILSIKNYEDEKNYIGKFVEANICFADEYDLYGEVI 451


>gi|329847628|ref|ZP_08262656.1| RNA modification enzyme, MiaB family protein [Asticcacaulis
           biprosthecum C19]
 gi|328842691|gb|EGF92260.1| RNA modification enzyme, MiaB family protein [Asticcacaulis
           biprosthecum C19]
          Length = 416

 Score =  195 bits (496), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 139/440 (31%), Positives = 212/440 (48%), Gaps = 34/440 (7%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDD--ADLIVLNTCHIREKAAEKVYSFLGRIR 88
           ++GC++N Y+S  +          R  + DD  +D I+ NTC +  +A  +    + R R
Sbjct: 7   TFGCRLNSYESEVI----------RKTAADDGLSDAIIFNTCAVTGEAVRQARQAIRRAR 56

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
                  KE  D  ++V GC AQ + +     S  V+ V+G     +       A   + 
Sbjct: 57  -------KENPDKRLIVTGCAAQTDPDTFANMSE-VDFVIGNADKQKAGAYRLTADSARV 108

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           VV+  +SV +    L  +DG  +R R   AF+ +Q GCD  CTFC++PY RG   S +  
Sbjct: 109 VVNDVFSVRETAGHL--IDGLKDRAR---AFVEVQNGCDHRCTFCIIPYGRGNSRSAAAG 163

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
            VV + ++L+  G  EI L G ++ +W G  L G+    + +   L  +  L RLR ++ 
Sbjct: 164 DVVAQTQRLVAEGYNEIVLTGVDLTSW-GNDLPGQPQLGNLVARILKLVPDLKRLRLSSI 222

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
              ++ D L +A  + + L PYLHL +Q G D ILK M RRH   +   +++++RS+RPD
Sbjct: 223 DAAEIDDTLFRAFAEEERLAPYLHLSLQHGDDLILKRMKRRHLRADAVALVEKVRSIRPD 282

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           IA  +D I GFP ET++ F   + LVD  G +    F YSPR  TP + M  Q+   V  
Sbjct: 283 IAFGADMIAGFPTETEEHFDNAVSLVDACGLSYVHVFPYSPRPQTPAAKM-PQLPRPVIK 341

Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIG 448
           ER   L+ K  E          G+ +  +IEK G        R+     VV  + +  +G
Sbjct: 342 ERAARLRAKAEEALRGHLARHAGRTLSCVIEKPG------FARAADFTEVVF-TGDATVG 394

Query: 449 DIIKVRITDVKISTLYGELV 468
            I  + IT        GELV
Sbjct: 395 GISDIAITSHDGKHAVGELV 414


>gi|282890695|ref|ZP_06299215.1| hypothetical protein pah_c026o007 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281499288|gb|EFB41587.1| hypothetical protein pah_c026o007 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 430

 Score =  195 bits (496), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 132/454 (29%), Positives = 229/454 (50%), Gaps = 30/454 (6%)

Query: 18  VDQCIVPQRFF-VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA 76
           +++  +PQ+ F + + GC+ N Y+S   +D   + GY      ++AD+ ++NTC + E A
Sbjct: 1   MNESSLPQKTFKIATLGCRTNQYESQAYQDQLIALGYRPAREDEEADVCIVNTCTVTETA 60

Query: 77  AEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL 136
             +       +R L     KE     +VV GC A+   +       + +VV+  +     
Sbjct: 61  DLQSKH---DVRQLS----KENPQAKIVVTGCAAEQNAQIFASIKGVEHVVLNKEK---- 109

Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
                      ++V T +  ED  E  SI     N      AF+ +Q+GC++FCT+C++P
Sbjct: 110 ----------DQLVQTLFPEEDVPE-FSI----KNFDAHTRAFVKVQDGCNEFCTYCIIP 154

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG-EKCTFSDLLYSLS 255
           Y RG   SR++ +++DE + LI NG  EI L G N+  + G  ++G       DL+ ++ 
Sbjct: 155 YVRGRSRSRTIPEIIDEVKDLISNGFKEIVLTGINIGDFDGNPVEGMPPHRLVDLVRAVD 214

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
           ++ GL RLR ++  P ++ D L  A  +       +H+ +QSGS+ +LK MNR++T   +
Sbjct: 215 QVPGLKRLRISSIDPDEIDDELADAVLNGAKTCHSMHIVLQSGSNVVLKRMNRKYTRQIF 274

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
              IDR+R   P+   ++D IVGFPGET+ DF  TM+++ ++ +A+   F YS R  T  
Sbjct: 275 LNTIDRLRQADPNFTFTTDIIVGFPGETETDFAETMEIMQEVQFAKVHMFPYSERKRTRA 334

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPW 434
           + M  +V  +V  +R   L +    Q     +  VGQ + VL E  H    G++ G +  
Sbjct: 335 ALMPNKVPPDVIKKRKQELLRSAEHQAYLLRERFVGQRMTVLTESGHISRPGEISGHTEN 394

Query: 435 LQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
             +V + + +    ++I+V + +     L G+ V
Sbjct: 395 FLNVWI-TGDFQSNELIEVDLVENTPQGLIGKFV 427


>gi|326791250|ref|YP_004309071.1| ribosomal protein S12 methylthiotransferase rimO [Clostridium
           lentocellum DSM 5427]
 gi|326542014|gb|ADZ83873.1| Ribosomal protein S12 methylthiotransferase rimO [Clostridium
           lentocellum DSM 5427]
          Length = 448

 Score =  195 bits (496), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 137/452 (30%), Positives = 225/452 (49%), Gaps = 31/452 (6%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ DS  M  +    G+      + AD+IV+NTC   E A ++    +  +   
Sbjct: 9   SLGCDKNLVDSEHMLGLLNQGGFSLTGDEEKADVIVVNTCCFIEDAKKESIENILEVAGY 68

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL----LERARFG 146
           K +    G    ++V GC+AQ   +EIL   P V+ VVG  +Y ++ ++    LE+    
Sbjct: 69  KET----GNCKALIVTGCMAQRYKQEILDEIPEVDAVVGTTSYDKIVDIANGILEQKGLR 124

Query: 147 KRVVD-TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            +  D  D  + D+  R+    G +       A++ I EGCDK CT+C++P  RG   SR
Sbjct: 125 TQHFDLIDREMLDEMPRILTTAGYF-------AYVKISEGCDKHCTYCIIPKLRGKYRSR 177

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            + ++  E  KL  +GV EI L+ Q+   +   G D E  + + LL+ L EI+G+  +R 
Sbjct: 178 QMDKIKAEVEKLAADGVSEIILVAQDTTEY---GRDLENASLAKLLHELGEIEGIEWIRV 234

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
              +P  ++D LI+       +  YL +P+Q  S  ILK M R+ +  + ++ + ++R  
Sbjct: 235 LYCYPESITDELIEEIKTNPKVCKYLDIPIQHASTAILKRMARKSSLEQLKERLGKLRQE 294

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P IA+ +  IVGFPGET++DF+   D V ++ + +   F YS   GTP +   +Q+DE 
Sbjct: 295 IPGIALRTTLIVGFPGETEEDFQILYDFVKEMRFDRLGVFTYSKEEGTPAALFEDQIDEK 354

Query: 386 VKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSV 438
            K +R   ++ LQ  +     +     VG+ ++VLIE    ++   +GR+    P +   
Sbjct: 355 TKIKRRDAIMALQHGISS---ALTAEKVGKTMKVLIEGKITDEDVYIGRTYQDAPDIDGE 411

Query: 439 VLNSKNHNI--GDIIKVRITDVKISTLYGELV 468
           V       +  GD + VRIT      L GE+V
Sbjct: 412 VFVEYEGELISGDFVDVRITASNDYDLIGEIV 443


>gi|153812695|ref|ZP_01965363.1| hypothetical protein RUMOBE_03102 [Ruminococcus obeum ATCC 29174]
 gi|149831211|gb|EDM86300.1| hypothetical protein RUMOBE_03102 [Ruminococcus obeum ATCC 29174]
          Length = 419

 Score =  195 bits (496), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 126/420 (30%), Positives = 231/420 (55%), Gaps = 25/420 (5%)

Query: 44  MEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLV 103
           M+ +  + GYE V   + AD+ V+NTC +   A  K    L + + +         D +V
Sbjct: 1   MQQLLENAGYETVPFEEGADVYVINTCTVTNIADRKSRQMLHKAKKM-------NPDAIV 53

Query: 104 VVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER--ARFGKRVVDTDYSVEDKFE 161
           V  GC AQA+ E+ L+    V++++G     ++ E LE       K+V   + +   ++E
Sbjct: 54  VATGCYAQADTEK-LKEDTAVDLILGNNQKTQIVEALEEYEKEHAKQVQVIEINHTKEYE 112

Query: 162 RLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNG 221
            LSI     +    V A++ +Q+GC++FCT+C++P+ RG   SR +  V+ E   L   G
Sbjct: 113 ELSIASTAEH----VRAYIKVQDGCNQFCTYCIIPFARGRVRSRKIEDVLREVETLAAKG 168

Query: 222 VCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAH 281
             E+ L G +++++       E+ +   L+ ++S ++G+ R+R  +  PR +++  ++  
Sbjct: 169 YKEVVLTGIHLSSYGVDFPKEERESLLSLIQAVSRVEGISRIRLGSLEPRIITEEFLEGI 228

Query: 282 GDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPG 341
                + P+ HL +QSG ++ LK+MNRR++A EY +  + IR   P  A+++D IVGFP 
Sbjct: 229 VKTGKVCPHFHLSLQSGCNKTLKNMNRRYSAQEYAEKCELIRKFYPAPALTTDVIVGFPQ 288

Query: 342 ETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAE---RLLCLQK-K 397
           ET++DF  + + V KI + +   FKYS R GT  ++M  Q+ E  KA+   R+L L + +
Sbjct: 289 ETEEDFEESYEFVKKIHFYETHIFKYSRRHGTKAASMDGQLTEAAKAQRSDRMLELHEIR 348

Query: 398 LREQQVSFNDACVGQIIEVLIEKHGKEKGK--LVGRS-PWLQSVVLNSKNHNIGDIIKVR 454
            RE    + +A +G+ +E+L+E+  +  G+   VG S  ++++V+  +  H + D++ V+
Sbjct: 349 ARE----YEEAMIGKKMELLLEEEIEIDGRPWYVGHSREYVRAVISKTDVHRVNDLVTVK 404


>gi|327403999|ref|YP_004344837.1| MiaB-like tRNA modifying enzyme [Fluviicola taffensis DSM 16823]
 gi|327319507|gb|AEA43999.1| MiaB-like tRNA modifying enzyme [Fluviicola taffensis DSM 16823]
          Length = 448

 Score =  195 bits (496), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 130/441 (29%), Positives = 230/441 (52%), Gaps = 27/441 (6%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N  ++  +  +F + G+ +V+  +  D++V+NTC + E A +K    + R   +
Sbjct: 11  TLGCKLNFSETSTISRLFENAGFAKVDFEETPDILVINTCSVTENADKKCKQLVRRAHKI 70

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
                    ++ V + GC AQ +  EI +  P V++V+G    + + E LE A   +   
Sbjct: 71  -------NPEVFVAIIGCYAQLKPTEIAQ-IPGVSLVLGANEKFNIVEHLE-ALEHENHT 121

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVT------------AFLTIQEGCDKFCTFCVVPYT 198
           +   ++  + E+   V    N K+  +            +FL IQ+GCD FCTFC +P  
Sbjct: 122 ENSSAINGENEKQGAVVKFENIKQTTSFIPSHSMGDRTRSFLKIQDGCDYFCTFCTIPLA 181

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258
           RG   + S+S  V EARK+ +  + E+ L G N+  + G+G +GE   F +L+ +L E+ 
Sbjct: 182 RGKSRNASISDTVLEARKIAETNIKEVVLTGVNIGDF-GQG-EGE--NFFELVKALDEVN 237

Query: 259 GLVRLRYTTSHPRDMSDCLIK-AHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
           G+ R R ++  P  +SD +I+    +    +P+ H+P+QSGS+R+LK+M R++    Y +
Sbjct: 238 GIDRYRISSIEPNLLSDEIIQFTLENSKRFVPHFHIPLQSGSNRLLKAMRRKYLRELYVE 297

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
            +  I+ +RPD AI  D IVGFPGETD++F  TMD +  +  +    F YS R  T  + 
Sbjct: 298 RVQHIKKLRPDCAIGVDVIVGFPGETDEEFIETMDFLKDLDVSYLHVFTYSERANTTAAK 357

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQS 437
           + + V   V+A+R   L     +++ +F ++ +G    VL E   +E+G + G +     
Sbjct: 358 LGDPVPNQVRAQRSKQLHILSDKKKRAFYESQIGSKRTVLFESE-EEEGIMYGFTENYVK 416

Query: 438 VVLNSKNHNIGDIIKVRITDV 458
           V        +  I  V++T++
Sbjct: 417 VKTPFNPELVNQIQNVQLTEI 437


>gi|255524216|ref|ZP_05391175.1| MiaB-like tRNA modifying enzyme YliG [Clostridium carboxidivorans
           P7]
 gi|296185337|ref|ZP_06853747.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Clostridium
           carboxidivorans P7]
 gi|255512041|gb|EET88322.1| MiaB-like tRNA modifying enzyme YliG [Clostridium carboxidivorans
           P7]
 gi|296050171|gb|EFG89595.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Clostridium
           carboxidivorans P7]
          Length = 446

 Score =  195 bits (496), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 141/444 (31%), Positives = 231/444 (52%), Gaps = 42/444 (9%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQ---GYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRI 87
           S GC  N  DS    ++  S      E VN    AD+I++NTC   E + ++    +  +
Sbjct: 10  SLGCDKNRIDS----EIILSNIKANNEIVNDAKKADIIIVNTCGFIETSKQESIDTILEM 65

Query: 88  RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147
              KN         L+VV GC+ Q  G+E++   P ++V++G   Y +L E +++    K
Sbjct: 66  AKYKNKY----NCKLLVVTGCLTQRYGKELMELMPEIDVMLGVNDYDKLNESIDKCI--K 119

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGV------TAFLTIQEGCDKFCTFCVVPYTRGI 201
              +  YS E K       D G N    +      TA++ I EGC+ FCT+C++P  RG 
Sbjct: 120 NSEEKVYSCEYK-------DAGINEGERILTTPSHTAYIRIAEGCNNFCTYCIIPKIRGK 172

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
             SRS+  ++ EA+ L   GV EI L+ Q+   + G  + G+K   S+L+  LS+I+ + 
Sbjct: 173 YRSRSMENIIKEAQSLAQQGVKEIILVAQDTTRY-GTDIYGKK-ALSELIRKLSKIENIH 230

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
            +R    +P ++++ LI        +  YL +P+Q  S+ ILK+M RR T  E    I++
Sbjct: 231 WIRILYCYPEEITEELIDEIATNTKVCKYLDIPLQHISNNILKAMGRRGTKEEILNNINK 290

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R    +I + +  IVGFPGET++DF+   D +      +   FKYS   GTP + M  Q
Sbjct: 291 LREKVKNIVLRTSIIVGFPGETEEDFQELKDFIKDEKLDKLGVFKYSREDGTPAALMKNQ 350

Query: 382 VDENVK---AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPW 434
           +DE VK    E L+ +Q+++ +Q    N   +G++ EV++E  GKE+ +  GR    +P 
Sbjct: 351 IDEKVKESREEELMSIQQEISKQ---INSNKIGRVYEVIVE--GKEEEEWYGRNYEMTPE 405

Query: 435 LQSVVLNSKNHN--IGDIIKVRIT 456
           +  +V  + ++N  IG I+ V+IT
Sbjct: 406 IDGLVYFNCDNNLEIGSIVNVKIT 429


>gi|269118813|ref|YP_003306990.1| MiaB-like tRNA modifying enzyme [Sebaldella termitidis ATCC 33386]
 gi|268612691|gb|ACZ07059.1| MiaB-like tRNA modifying enzyme [Sebaldella termitidis ATCC 33386]
          Length = 430

 Score =  195 bits (496), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 130/441 (29%), Positives = 229/441 (51%), Gaps = 28/441 (6%)

Query: 33  GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92
           GC++N Y++  ++  F   GY  V   D AD+ V+NTC +   A +K    L R + +  
Sbjct: 13  GCKVNQYETEIIKKDFLENGYNEVEFEDRADVYVINTCTVTSIADKKNKKMLRRAKKI-- 70

Query: 93  SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG---PQTYYRLPELLERARFGKRV 149
                  D +V+  GC AQ   E+ L+    V+ ++G    +  Y++        F K++
Sbjct: 71  -----NPDSVVIATGCYAQTNVED-LKEIKEVDYIIGNVKKEEVYKI--------FSKKL 116

Query: 150 VDTDYSVEDKFERLSIVDGGYNRKR-GVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
             ++Y V++ F++       Y   R    AF+ IQ+GC KFC++C +PY RG+  SR   
Sbjct: 117 --SNYQVDNIFDQKEYSSQKYAVSRDKARAFVKIQDGCTKFCSYCKIPYARGMSRSRQPE 174

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYTT 267
            V++E + L + G  EI + G N++ +   G D GE   F  +L  + +I+ + R+R ++
Sbjct: 175 SVLEEIKFLGEAGYKEIVVTGINLSEY---GSDFGENINFDYILEKILKIEEIDRVRVSS 231

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
            +P  +S+  I    +   LMP+LH+ +QS  D+ILK M R + A    +++ +++   P
Sbjct: 232 VYPDTLSEKFISLLKENKKLMPHLHVSIQSLDDKILKLMKRNYRAEFVVELLKKVQEEVP 291

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
           D AI++D I GFP E +++F  T + + KI ++    F YS R  T  +    +++  VK
Sbjct: 292 DSAITADIITGFPQEEEENFWNTFENMKKINFSDFHIFPYSDREKTAAAAFTGKIEPEVK 351

Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNI 447
            ER+  L+K  + +   F +  +  + +V IE+   + GK  G +     V +NS +H +
Sbjct: 352 KERVKILEKLKKSKIKEFREKFLDTVQKVYIEEI--KAGKAYGYTENYLRVEVNSVSHKV 409

Query: 448 GDIIKVRITDVKISTLYGELV 468
            DI++V+I       L GE++
Sbjct: 410 ADIVEVKIMSSAGDLLKGEVI 430


>gi|315652513|ref|ZP_07905497.1| Fe-S oxidoreductase [Eubacterium saburreum DSM 3986]
 gi|315485229|gb|EFU75627.1| Fe-S oxidoreductase [Eubacterium saburreum DSM 3986]
          Length = 459

 Score =  195 bits (495), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 123/416 (29%), Positives = 217/416 (52%), Gaps = 41/416 (9%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  M+ +  + GY  V+  + AD+ ++NTC +   A  K    L R R +
Sbjct: 8   TLGCKVNTYETEAMQQLMEAAGYRCVDFGEKADIYIINTCSVTNIADRKSRQMLHRARKM 67

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL----PELLERARFG 146
                    D +VV AGC  ++  + I     I +++VG      +     E L+     
Sbjct: 68  -------NEDAIVVAAGCYVESAKKRIDEDLSI-DIIVGNNNKNEIVNIINEYLQDKNEN 119

Query: 147 KRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           K ++D + S + ++F    I D          AF+ +Q+GC++FC++C++P+TRG   SR
Sbjct: 120 KFIIDINKSSDYEEFHISKINDH-------TRAFIKVQDGCNQFCSYCIIPFTRGRVRSR 172

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG--------------------EKC 245
            +  +++E +K  D+G  E+ L G +++++    LD                     +K 
Sbjct: 173 KMENIIEEVKKFADSGYKEVVLTGIHLSSYGIDFLDESYNKRMEWLTAREESDEEFVKKN 232

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
              +L+ ++SE+ G+ R+R  +  PR + +  IK+ G++D   P+ HL +QSG D+ LKS
Sbjct: 233 ELLNLIENISEVDGIERIRIGSLEPRIIKEDFIKSLGNIDKFCPHFHLSLQSGCDKTLKS 292

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           MNR+++  E+ + ++ IR      AI++D IVGFPGE+  DF  + + ++K+ + +   F
Sbjct: 293 MNRKYSVDEFYKGVEIIRKYFDSPAITTDIIVGFPGESKLDFEESKNFIEKVKFYETHIF 352

Query: 366 KYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKH 421
            YS R GT  +NM  QVD N KA+R   L +     Q  F    +G+  E+L E++
Sbjct: 353 PYSIREGTKAANM-PQVDGNEKAKRANILSEINLVNQREFRKLRLGKADEMLCEEN 407


>gi|145629674|ref|ZP_01785471.1| hypothetical protein CGSHi22121_01467 [Haemophilus influenzae
           22.1-21]
 gi|144978185|gb|EDJ87958.1| hypothetical protein CGSHi22121_01467 [Haemophilus influenzae
           22.1-21]
          Length = 445

 Score =  195 bits (495), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 149/471 (31%), Positives = 242/471 (51%), Gaps = 54/471 (11%)

Query: 20  QCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEK 79
           Q   P   FV S GC  N+ DS R+     + GY  V S ++ DL+++NTC   + A ++
Sbjct: 2   QNSTPSIGFV-SLGCPKNLVDSERILTELRTDGYNIVPSYENVDLVIVNTCGFIDSAVQE 60

Query: 80  VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL 139
               +G         ++E G   V+V GC+   E ++I    P V  V GP +Y  +  +
Sbjct: 61  SLEAIGE-------ALEENGR--VIVTGCLGAKE-DQIREVHPKVLEVSGPHSYETV--M 108

Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
            +  ++  +     Y+     + + +    Y       A+L I EGCD  CTFC++P  R
Sbjct: 109 AQVHKYVSKPTHNPYTSLVPKQGVKLTPKHY-------AYLKISEGCDHRCTFCIIPSMR 161

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-----RGKGLDGEKCTF------- 247
           G   SRS++QV+DEA++L + GV E+ ++ Q+ +A+     R +G  G K  F       
Sbjct: 162 GDLESRSITQVLDEAKRLAEAGVKELLVVSQDTSAYSMDLKRQEG--GVKTAFWNGMPIK 219

Query: 248 SDLLYSLSEIKGL---VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304
           +DL+    ++  L   VRL Y   +P    D LI    D   L+PYL +P+Q  S +ILK
Sbjct: 220 NDLMTLCKQLGKLGIWVRLHYVYPYPH--VDDLIPLMAD-GTLLPYLDIPLQHASPKILK 276

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
           +M R  +     + I + R + PD+ + S FIVGFPGET++DF+  +D + +    +   
Sbjct: 277 AMKRPGSIDRTLERIKQWREICPDLTLRSTFIVGFPGETEEDFQLLLDFLKEAQLDRVGC 336

Query: 365 FKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFN--DACVGQIIEVLIEKHG 422
           FK+SP  G P + M +QV E+VK ER     +   +Q++S N     +G+ ++VL+++  
Sbjct: 337 FKFSPVEGAPATEMADQVPEDVKEERFHRFMQ--LQQEISANRLKQKIGKTLDVLVDEID 394

Query: 423 KEKGKLVGRS----PWLQSVV----LNSKNHNIGDIIKVRITDVKISTLYG 465
           +E   ++GRS    P +  +V    L+  N  +GD+IKV IT+     L+G
Sbjct: 395 EE--GIIGRSKADAPEVDGLVYVDNLSGINVKVGDVIKVTITNSDEYDLWG 443


>gi|257062069|ref|YP_003139957.1| MiaB-like tRNA modifying enzyme YliG [Cyanothece sp. PCC 8802]
 gi|256592235|gb|ACV03122.1| MiaB-like tRNA modifying enzyme YliG [Cyanothece sp. PCC 8802]
          Length = 449

 Score =  195 bits (495), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 139/447 (31%), Positives = 224/447 (50%), Gaps = 29/447 (6%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCH-IREKAAEKVYSFLGRI 87
           +   GC+ N  DS  M  +    GY+   + + AD +++NTC  I+E   E V + +   
Sbjct: 9   ISHLGCEKNRIDSEHMLGLLAEAGYQIDGNEELADYVIVNTCSFIQEARQESVRTLV--- 65

Query: 88  RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147
             L  +  K      ++++GC+AQ   EE+L   P    +VG   Y  + ++++R   G+
Sbjct: 66  -ELAEANKK------IIISGCMAQHFQEELLEELPEAVAIVGTGDYQTIVDVVQRVENGE 118

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVT---AFLTIQEGCDKFCTFCVVPYTRGIEIS 204
           RV     S    F    I D    R R  T   A+L + EGCD  C FC++P+ RG + S
Sbjct: 119 RV--KAISTTPTF----IADESIPRYRTTTEGVAYLRVAEGCDYRCAFCIIPHLRGNQRS 172

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK-GLVRL 263
           RS+  +V EA++L D GV E+ L+ Q    + G  L GE    ++LL  L ++    VR+
Sbjct: 173 RSIESIVTEAQQLADQGVQELILISQITTNY-GLDLYGEP-KLAELLRELGKVDIPWVRI 230

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
            Y  ++P  ++  +I A  +   ++PYL LP+Q    +ILK+MNR         II+RI+
Sbjct: 231 HY--AYPTGLTSPVIAAIRETPNVLPYLDLPLQHSHPQILKTMNRPWQGQVNDSIIERIK 288

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              P+  + + FIVGFPGET++ F   ++ V +  +     F +S    TP   M  QV 
Sbjct: 289 EAIPEAVLRTTFIVGFPGETEEHFDHLVNFVQRHEFDHVGVFTFSAEEETPAYQMSPQVP 348

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVV 439
            ++  ER   L +  +   +  N  C+GQ + VLIE+   + G+L+GRS    P +  +V
Sbjct: 349 PDIAQERRNLLMEVQQPISIKKNQNCIGQTVPVLIEQENPQTGQLIGRSPRFAPEVDGLV 408

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGE 466
                  +  I+ V+IT   +  LYG+
Sbjct: 409 YVQGEAPLNTIVPVQITHADVYDLYGK 435


>gi|67920439|ref|ZP_00513959.1| Protein of unknown function UPF0004:Conserved hypothetical protein
           1125 [Crocosphaera watsonii WH 8501]
 gi|67857923|gb|EAM53162.1| Protein of unknown function UPF0004:Conserved hypothetical protein
           1125 [Crocosphaera watsonii WH 8501]
          Length = 437

 Score =  195 bits (495), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 139/451 (30%), Positives = 227/451 (50%), Gaps = 33/451 (7%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           +   GC+ N  DS  M  +  ++GY+   + + AD +++NTC   ++A E+    L  + 
Sbjct: 9   ISHLGCEKNRIDSEHMLGLLAAKGYDIDANEELADYVIVNTCSFIQEAREESVRTLVELA 68

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
                         ++++GC+AQ   EE+L   P    +VG   Y ++ E+++R   G+R
Sbjct: 69  EANKK---------IIISGCMAQHFQEELLEELPEAVALVGTGDYQKIVEVVQRVETGER 119

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVT---AFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           V  T+ +    F    + D    R R      A+L + EGCD  C FC++PY RG + SR
Sbjct: 120 V--TEVTQNPSF----VADETTPRYRTTNEAVAYLRVAEGCDYRCAFCIIPYLRGNQRSR 173

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK-GLVRLR 264
           S+  +V EA++L + GV EI L+ Q    + G  L G K   ++LL +L ++    +R+ 
Sbjct: 174 SIESIVREAQQLAEQGVQEIILISQITTNY-GLDLYG-KPKLAELLRALGQVDVPWIRIH 231

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           Y  ++P  ++  +I A  +   ++PYL LP+Q     ILKSMNR         IID+++ 
Sbjct: 232 Y--AYPTGLTQTVIDAIRETPNILPYLDLPLQHSHPNILKSMNRPWQGQVNDNIIDKLKK 289

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             P+    + FIVGFPGET++ F   +  V +  +     F +SP   TP   M  QV  
Sbjct: 290 AIPNAIFRTTFIVGFPGETEEYFEHLIKFVKRHEFDHVGVFTFSPEEETPAYQMQNQVLP 349

Query: 385 NVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQS 437
            +  ER   L+ +Q+ +  Q+   N   VG+ +EVLIE+   +  + +GRS    P +  
Sbjct: 350 EIAQERRNYLMEIQQPISAQK---NQNYVGKTVEVLIEQENPQTQEHIGRSSRFAPEVDG 406

Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           VV       +  II V+IT   I  LYG+++
Sbjct: 407 VVYVQGEAPLNSIIPVKITHADIYDLYGKVI 437


>gi|145635675|ref|ZP_01791371.1| hypothetical protein CGSHiAA_01509 [Haemophilus influenzae PittAA]
 gi|145267070|gb|EDK07078.1| hypothetical protein CGSHiAA_01509 [Haemophilus influenzae PittAA]
          Length = 445

 Score =  195 bits (495), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 148/471 (31%), Positives = 244/471 (51%), Gaps = 54/471 (11%)

Query: 20  QCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEK 79
           Q   P   FV S GC  N+ DS R+     + GY  V S ++ DL+++NTC   + A ++
Sbjct: 2   QNSTPSIGFV-SLGCPKNLVDSERILTELRTDGYNIVPSYENVDLVIVNTCGFIDSAVQE 60

Query: 80  VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL 139
               +G         ++E G   V+V GC+   E ++I    P V  V GP +Y  +  +
Sbjct: 61  SLEAIGE-------ALEENGR--VIVTGCLGAKE-DQIREVHPKVLEVSGPHSYETV--M 108

Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
            +  ++  +   + Y+     + + +    Y       A+L I EGCD  CTFC++P  R
Sbjct: 109 AQVHKYVSKPTHSPYTSLVPKQGVKLTPKHY-------AYLKISEGCDHRCTFCIIPSMR 161

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-----RGKGLDGEKCTF------- 247
           G   SRS++QV+DEA++L + GV E+ ++ Q+ +A+     R +G  G K  F       
Sbjct: 162 GDLESRSITQVLDEAKRLAEAGVKELLVVSQDTSAYSMDLKRQEG--GVKTAFWNGMPIK 219

Query: 248 SDLLYSLSEIKGL---VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304
           +DL+    ++  L   VRL Y   +P    D LI    D   L+PYL +P+Q  S +ILK
Sbjct: 220 NDLMTLCKQLGKLGIWVRLHYVYPYPH--VDDLIPLMAD-GTLLPYLDIPLQHASPKILK 276

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
           +M R  +     + I + R + PD+ + S FI+GFPGET++DF+  +D + +    +   
Sbjct: 277 AMKRPGSIDRTLERIKQWREICPDLTLRSTFILGFPGETEEDFQLLLDFLKEAQLDRVGC 336

Query: 365 FKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFN--DACVGQIIEVLIEKHG 422
           FK+SP  G P ++M +QV E+VK ER     +   +Q++S N     +G+ ++VL+++  
Sbjct: 337 FKFSPVEGAPATDMADQVPEDVKEERFHRFMQ--LQQEISANRLKQKIGKTLDVLVDEID 394

Query: 423 KEKGKLVGRS----PWLQSVV----LNSKNHNIGDIIKVRITDVKISTLYG 465
           +E   ++GRS    P +  +V    L+  N  +GD+IKV IT+     L+G
Sbjct: 395 EE--GIIGRSKADAPEVDGLVYVDNLSGINVKVGDVIKVTITNSDEYDLWG 443


>gi|145639398|ref|ZP_01795003.1| hypothetical protein CGSHiII_04472 [Haemophilus influenzae PittII]
 gi|145271445|gb|EDK11357.1| hypothetical protein CGSHiII_04472 [Haemophilus influenzae PittII]
 gi|309751757|gb|ADO81741.1| Ribosomal protein S12 methylthiotransferase [Haemophilus influenzae
           R2866]
          Length = 445

 Score =  195 bits (495), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 146/469 (31%), Positives = 241/469 (51%), Gaps = 50/469 (10%)

Query: 20  QCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEK 79
           Q   P   FV S GC  N+ DS R+     + GY  V S ++ DL+++NTC   + A ++
Sbjct: 2   QNSTPSIGFV-SLGCPKNLVDSERILTELRTDGYNIVPSYENVDLVIVNTCGFIDSAVQE 60

Query: 80  VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL 139
               +G         ++E G   V+V GC+   E ++I    P V  V GP +Y  +  +
Sbjct: 61  SLEAIGE-------ALEENGR--VIVTGCLGAKE-DQIREVHPKVLEVSGPHSYETV--M 108

Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
            +  ++  +     Y+     + + +    Y       A+L I EGCD  CTFC++P  R
Sbjct: 109 AQVHKYVSKPTHNPYTSLVPKQGVKLTPKHY-------AYLKISEGCDHRCTFCIIPSMR 161

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR---GKGLDGEKCTF-------SD 249
           G   SRS++QV+DEA++L + GV E+ ++ Q+ +A+     + + G K  F       +D
Sbjct: 162 GDLESRSITQVLDEAKRLAEAGVKELLVVSQDTSAYSMDLKRQVGGVKTAFWNGMPIKND 221

Query: 250 LLYSLSEIKGL---VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306
           L+    ++  L   VRL Y   +P    D LI    D   L+PYL +P+Q  S +ILK+M
Sbjct: 222 LMTLCKQLGKLGIWVRLHYVYPYPH--VDDLIPLMAD-GTLLPYLDIPLQHASPKILKAM 278

Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
            R  +     + I + R + P++ + S FIVGFPGET++DF+  +D + +    +   FK
Sbjct: 279 KRPGSIDRTLERIKQWREICPNLTLRSTFIVGFPGETEEDFQLLLDFLKEAQLDRVGCFK 338

Query: 367 YSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFN--DACVGQIIEVLIEKHGKE 424
           +SP  G P + M +QV E+VK ER     +   +Q++S N     +G+ ++VL+++  +E
Sbjct: 339 FSPVEGAPATEMADQVPEDVKEERFHRFMQ--LQQEISANRLKQKIGKTLDVLVDEIDEE 396

Query: 425 KGKLVGRS----PWLQSVV----LNSKNHNIGDIIKVRITDVKISTLYG 465
              ++GRS    P +  +V    L+  N  +GD+IKV IT+     L+G
Sbjct: 397 --GIIGRSKADAPEVDGLVYVDNLSGINVKVGDVIKVTITNSDAYDLWG 443


>gi|77917652|ref|YP_355467.1| 2-methylthioadenine synthetase [Pelobacter carbinolicus DSM 2380]
 gi|123729547|sp|Q3A8J5|RIMO_PELCD RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|77543735|gb|ABA87297.1| SSU ribosomal protein S12P methylthiotransferase [Pelobacter
           carbinolicus DSM 2380]
          Length = 455

 Score =  195 bits (495), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 138/451 (30%), Positives = 228/451 (50%), Gaps = 29/451 (6%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC-HIREKAAEKVYSFLGRIRN 89
           S GC  N+ D+  M        +E       AD+I++NTC  I +   E V + L  I  
Sbjct: 16  SLGCAKNLVDAEVMLGYLPQDRFEITTDEAQADIIIVNTCGFISDAKEESVETLLEAIEY 75

Query: 90  LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149
            K+     G   L+VV GC++Q   E++ +  P V++++G     R+ EL+E    G+ V
Sbjct: 76  KKS-----GNCTLLVVTGCLSQRYAEDMAKELPEVDILLGTGDVPRILELIEAHDRGEDV 130

Query: 150 VDT----DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
             +     Y  +    R++            + ++ I EGC+  C++C++P  RG   SR
Sbjct: 131 RQSVGLPQYLYDHTTPRVA-------SSPFYSTYVKIAEGCNNLCSYCIIPQLRGPLRSR 183

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           S++ VV E  +L+  G  E+ L+ Q++ A+     DG   +   LL  L +I  L  LR 
Sbjct: 184 SIASVVAEVERLVAAGAQEVNLIAQDITAFGADRHDG--ASLEGLLRELVKISELRWLRL 241

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
             ++P  +SD LI+     + +  Y  +P+Q   DR+L  MNRR      R +I R+R  
Sbjct: 242 LYAYPDGISDELIELVATEEKICSYFDVPLQHIDDRVLARMNRRVGEDTIRDLIHRMRQR 301

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            PD+ + + FIVGFPGETD +F   +  V++  + +   F+YS    TP +++ +QV E 
Sbjct: 302 IPDLTLRTSFIVGFPGETDAEFAKLLAFVEEGHFDRVGVFRYSREEDTPAASLPDQVPEG 361

Query: 386 VKAERLLCLQKKLREQQVSF--NDACVGQIIEVLIEKHGKE-----KGKLVGRSPWLQ-S 437
           VK  R   L K   +Q+VSF  N A +G++  VL+E + +E      G+ + ++P +   
Sbjct: 362 VKKSRYNKLMKA--QQRVSFRRNRALIGRVEPVLVEGYSEETELLLSGRSIRQAPDVDGQ 419

Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           V + +   ++G I+ +RITD     L GE+V
Sbjct: 420 VYITAGQADVGQIVPLRITDSSEYDLIGEIV 450


>gi|261866815|ref|YP_003254737.1| ribosomal protein S12 methylthiotransferase [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261412147|gb|ACX81518.1| hypothetical protein D11S_0094 [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 443

 Score =  195 bits (495), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 140/464 (30%), Positives = 221/464 (47%), Gaps = 46/464 (9%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
            P      S GC  N+ DS R+     S GY  + S ++ADL+++NTC   + A ++   
Sbjct: 3   TPPNIGFVSLGCPKNLVDSERILTELRSNGYNIIPSYENADLVIVNTCGFIDSAVQESLE 62

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +G         ++E G   V+V GC+   E ++I +  P V  + GP +Y  +      
Sbjct: 63  AIGE-------ALEENGK--VIVTGCLGAKE-DQIRQVHPKVLEISGPHSYETV-----M 107

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            +  K V    YS    +E L +   G        A+L I EGCD  CTFC++P  RG  
Sbjct: 108 NQVHKYVPKPQYS---PYESL-VPAQGVKLTPKHYAYLKISEGCDHRCTFCIIPSMRGDL 163

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNA---------------WRGKGLDGEKCTF 247
            SR ++QV+DEA++L+D GV E+ ++ Q+ +A               W G  +   K   
Sbjct: 164 DSRPITQVLDEAKRLVDAGVKELLIVSQDTSAYALDQSKENQNKTVFWNGMPI---KNNL 220

Query: 248 SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307
             L   L  +   VRL Y   +P       + A G L   +PYL +P+Q  S +ILK+M 
Sbjct: 221 ISLCRQLGNLGVWVRLHYVYPYPHVDDLIPLMAEGKL---LPYLDIPLQHASPKILKTMK 277

Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           R        + I + R + P++ + S FIVGFPGET++DF+  +D +      +   FK+
Sbjct: 278 RPGKIDRTLERIQQWREICPELTLRSTFIVGFPGETEEDFQMLLDFLKAAQLDRVGCFKF 337

Query: 368 SPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-- 425
           SP  G P ++M +QV E VK ER     +  +E   +     +G+ + V++++   +   
Sbjct: 338 SPVEGAPATDMPDQVPEEVKEERFHRFMQVQQEISAARLQQKIGKTLSVIVDEVNMKGVI 397

Query: 426 GKLVGRSPWLQSVVLNSKNH----NIGDIIKVRITDVKISTLYG 465
           G+ +  +P +  VV          NIGD+I V ITD     L+G
Sbjct: 398 GRSMADAPEIDGVVYVENQSQSAVNIGDVISVTITDADEYDLWG 441


>gi|325662160|ref|ZP_08150778.1| MiaB-like tRNA modifying enzyme [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|331085957|ref|ZP_08335040.1| MiaB-like tRNA modifying enzyme [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|325471609|gb|EGC74829.1| MiaB-like tRNA modifying enzyme [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|330406880|gb|EGG86385.1| MiaB-like tRNA modifying enzyme [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 438

 Score =  194 bits (494), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 129/429 (30%), Positives = 232/429 (54%), Gaps = 37/429 (8%)

Query: 33  GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92
           GC++N Y++  M+++    GYE V   + AD+ ++NTC +   A  K    + R + +  
Sbjct: 10  GCKVNAYETEAMQELLEQNGYEIVPFQEGADIYIINTCTVTNMADRKSRQMIHRAKKM-- 67

Query: 93  SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR---- 148
                  D +VV AGC  QA+ E   +    +++V+G      L E+LE     ++    
Sbjct: 68  -----NPDAIVVAAGCYVQAQ-ENSDKIDECIDIVIGNNKKQNLIEILEEYEQKRKEADG 121

Query: 149 ------VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
                 V+D +++ E  +E L +     + +    A++ +Q+GC++FCT+C++PY RG  
Sbjct: 122 VFVQQEVIDINHTKE--YEELHLTKTAEHTR----AYIKVQDGCNQFCTYCIIPYMRGRV 175

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLV 261
            SR   +VV+E   L  NG  E+ L G +++++   G+D  EK T   L+ ++  I+G+ 
Sbjct: 176 RSRRKEEVVEEVSALAANGYKEVVLTGIHLSSY---GVDFEEKETLLSLIQAVHAIEGIE 232

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R  +  PR +++    A   L  + P+ HL +QSG +  LK MNRR++A EY +    
Sbjct: 233 RIRLGSLEPRIITEEFASALSALPKICPHFHLSLQSGCEETLKRMNRRYSAEEYFEKCML 292

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R    + A+++D IVGFPGET+++F  +   V+K+ + +   FKYS R GT  + M  Q
Sbjct: 293 LRKYFENPALTTDIIVGFPGETEEEFEESRAFVEKVNFYETHIFKYSKRQGTKAAVMPNQ 352

Query: 382 VDENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK--LVGRSP-WL 435
           V E  K +R   LL L ++ R+   ++ +   G+  E+L+E+  ++ GK   +G +  ++
Sbjct: 353 VPEPEKTKRSNTLLALDERNRK---AYEEQFAGKETEILVEEQMEKDGKTYWIGHTKEYI 409

Query: 436 QSVVLNSKN 444
           +  +L+ +N
Sbjct: 410 RLAILSDEN 418


>gi|289449689|ref|YP_003474403.1| MiaB-like protein [Clostridiales genomosp. BVAB3 str. UPII9-5]
 gi|289184236|gb|ADC90661.1| MiaB-like protein [Clostridiales genomosp. BVAB3 str. UPII9-5]
          Length = 463

 Score =  194 bits (494), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 134/447 (29%), Positives = 220/447 (49%), Gaps = 28/447 (6%)

Query: 33  GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92
           GC++N Y++  +   F + GYE V+    AD+ VLNTC +  +A  K    L R R    
Sbjct: 27  GCKVNRYETDAVAQQFATAGYEVVDFDSVADIYVLNTCAVTGEAGRKSGQMLRRAR---- 82

Query: 93  SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE--RARFGKR-- 148
              K+    +V V GC  Q  GE         ++VVG Q   R+   +E  RA + +   
Sbjct: 83  ---KKNPAAVVAVMGCHVQLGGE-----CSAADIVVGTQGKKRVFAAVEHFRAEWAEHNF 134

Query: 149 VVDTDYSVEDKFERLSIVD-------GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
             D   +  D  + L++ D       G  +++    A++ IQ+GC+ FC++C +P+ RG 
Sbjct: 135 AADARPARLDMIQTLALADAPDFEDFGAVDQQSETRAYIKIQDGCNNFCSYCAIPFARGR 194

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
             SRS   ++ E R +   G  E+ + G +V ++ G+         + L   L+E+ GL 
Sbjct: 195 VRSRSEESILREGRGIAAAGFKEVVITGIHVCSY-GRDRGESSTALTSLCAKLAELPGLE 253

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R  +  P  +S   I+A      L P+ HL +QSGSD +L+ M RR+T   YRQ+++ 
Sbjct: 254 RIRLGSLEPLSVSAAFIEAASANPKLCPHFHLSLQSGSDTVLRRMRRRYTTENYRQVVNG 313

Query: 322 IRSVRPD-IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           +R+   + + +++D IVGFPGET+ +F  T+    ++ + +   F+YS R GT  +    
Sbjct: 314 LRAAYGERLGLTTDIIVGFPGETEAEFAETVAFCREMSFTRMHIFRYSERAGTAATQFEG 373

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440
           +V+ +V A R   L K   E Q +      G+   VL+E+  KE G   G +P    +VL
Sbjct: 374 KVEASVAAYRAEELAKVAAELQAAHQARRQGKNDLVLLEQRDKE-GYFEGYAPNYDPIVL 432

Query: 441 NSKNHNI--GDIIKVRITDVKISTLYG 465
                 +  G II VR+  ++     G
Sbjct: 433 GFDTSELKSGLIIPVRLIGIRNGRFIG 459


>gi|229825044|ref|ZP_04451113.1| hypothetical protein GCWU000182_00394 [Abiotrophia defectiva ATCC
           49176]
 gi|229790791|gb|EEP26905.1| hypothetical protein GCWU000182_00394 [Abiotrophia defectiva ATCC
           49176]
          Length = 464

 Score =  194 bits (494), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 124/404 (30%), Positives = 212/404 (52%), Gaps = 20/404 (4%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + ++ ++ S GC  N+ DS  M      +GYE  + + +AD  V+N+C     A E+  +
Sbjct: 1   MTEKIYLVSLGCDKNLVDSEIMLGFLKREGYEITDELYEADYAVVNSCCFIGDAKEESIN 60

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +  I  LK    KEG    ++V GC+AQ     I    P  + V+G   Y  +   ++ 
Sbjct: 61  TIIEIGELK----KEGKLKGLIVTGCLAQRYQSLITEELPEADAVIGTTAYDNIVAAIDE 116

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKR----GVTAFLTIQEGCDKFCTFCVVPYT 198
            +  ++  +    +ED  +RL+   GG   +      +++++ I EGC+K CT+C++PY 
Sbjct: 117 IKTKQKKDNKSLYIED-LDRLA---GGEEVRLVPAGEISSYIKIAEGCNKRCTYCIIPYI 172

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258
           RG   S  +  ++ EA  L   G  E+ L+ Q    + G  + G+K    DL++ LS+I 
Sbjct: 173 RGNFRSIPMETIIKEAESLAAQGTKELLLVAQETTLY-GTDIYGKKA-LPDLVHELSKIS 230

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           G+  +R    +P +++D +I A  +   +  Y+ LP+Q  SD ILK M RR    E R+ 
Sbjct: 231 GIEWIRLLYCYPEEITDEIIYAIKNEKKVCHYIDLPIQHSSDSILKRMARRTNQAELRER 290

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           I ++R   PDI + +  I GFPGET+DDF+   + VD++ + +   F YS   GTP + M
Sbjct: 291 IAKLREEIPDITLRTTLITGFPGETEDDFKELYNFVDEMEFDRLGVFTYSAEEGTPAAEM 350

Query: 379 LEQVDENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIE 419
             Q+DE VK  R   ++ LQ+++  ++    +  +G++ EVL+E
Sbjct: 351 ENQIDEEVKVARRNEIMELQQEISAEKA---EGRIGKVYEVLVE 391


>gi|288957725|ref|YP_003448066.1| miaB-like tRNA modifying enzyme [Azospirillum sp. B510]
 gi|288910033|dbj|BAI71522.1| miaB-like tRNA modifying enzyme [Azospirillum sp. B510]
          Length = 423

 Score =  194 bits (494), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 136/437 (31%), Positives = 220/437 (50%), Gaps = 31/437 (7%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           + ++GC++N Y+S  M +   S G +        D++++NTC +  +A  +    + ++R
Sbjct: 15  IVTFGCRLNSYESEVMRNHARSAGLD--------DVVIVNTCAVTSEAERQARQTIRKLR 66

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
                  +E  D  +VV GC AQ + +      P V+ V+G Q   + PE        K 
Sbjct: 67  -------RERPDARIVVTGCAAQIDPQRFAA-MPEVDQVLGNQEKLQ-PESWGLPPAEKV 117

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           +V+   SV++    L  + G  +R R   AF+ +Q+GCD  CTFC++PY RG   S  + 
Sbjct: 118 LVNDIMSVKETAGHL--IGGFEDRAR---AFVQVQQGCDHRCTFCIIPYGRGPSRSVPIG 172

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
            +V++ + L+  G  E+ L G ++ ++ G  L G       +   L+ +  L RLR ++ 
Sbjct: 173 GIVEQVQALVKAGYNEVVLSGVDITSY-GPDLPGSPSLGQMVRRLLALVPELPRLRLSSI 231

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
              +M D L +  G+   LMP+LHL +Q+G D +LK M RRH   +      R+RSVRPD
Sbjct: 232 DCIEMDDDLWRLIGNEPRLMPHLHLSLQAGDDMVLKRMKRRHGRADSIAFCQRVRSVRPD 291

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           +   +DFI GFP ET++ F+ T+ LV++ G      F YSPR GTP + M  QVD  V+ 
Sbjct: 292 VVFGADFIAGFPTETEEMFQNTLRLVEECGLTWLHVFPYSPRPGTPAARM-PQVDGAVRK 350

Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIG 448
           ER   L+      +     + VG+   VL+EK        +GR+    ++ L  +    G
Sbjct: 351 ERAARLRAVGEVAEARALASLVGRTATVLVEKED------LGRTEHFAAIRLG-RPFPPG 403

Query: 449 DIIKVRITDVKISTLYG 465
            ++   IT +K   L G
Sbjct: 404 ALVPAAITGIKDGVLTG 420


>gi|332248856|ref|XP_003273581.1| PREDICTED: CDK5 regulatory subunit-associated protein 1 isoform 2
           [Nomascus leucogenys]
          Length = 546

 Score =  194 bits (494), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 134/458 (29%), Positives = 220/458 (48%), Gaps = 73/458 (15%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ ++++YGCQMNV D+     +    GY R +++ +AD+I+L TC IREKA + +++ L
Sbjct: 136 RKVYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCSIREKAEQTIWNRL 195

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            +++ LK  R +    L + + GC+A+   EEIL R  +V+++ GP  Y  LP+LL  A 
Sbjct: 196 HQLKALKTRRPRSRVPLKIGILGCMAERLKEEILNREKMVDILAGPDAYRDLPQLLAVAE 255

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G++  +   S+++ +  +  V    +     +AF++I  GCD  C++C+VP+TRG E S
Sbjct: 256 SGQQAANVLLSLDETYADVMPVQTSPS---ATSAFVSIMRGCDNMCSYCIVPFTRGRERS 312

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R ++ +                                           L E+K L    
Sbjct: 313 RPIASI-------------------------------------------LEEVKKLSEQV 329

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
               H RD              +   +HLP QSGS R+L++M R ++   Y +++  IR 
Sbjct: 330 LQLIHERDN-------------ICKQIHLPAQSGSSRVLEAMWRGYSREAYVELVHHIRE 376

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML-EQVD 383
             P +++SSDFI GF GET++D   T+ L+ ++ Y   F F YS R  T   + L + V 
Sbjct: 377 SIPGVSLSSDFIAGFCGETEEDHVQTVSLLREVQYNIGFLFAYSMRQKTRAYHRLKDDVP 436

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPW-LQSVVLN 441
           E VK  RL  L    RE+    N   VG    VL+E   K     L GR+   L+ +  +
Sbjct: 437 EEVKLRRLEELITVFREEATKANQTSVGCTQLVLVEGLSKRSATDLCGRNDGNLKVIFPD 496

Query: 442 SKNHNI-----------GDIIKVRITDVKISTLYGELV 468
           ++  ++           GD + V+IT     TL G ++
Sbjct: 497 AEMEDVNNPGLRVRAQPGDYVLVKITSASSQTLRGHVL 534


>gi|305667336|ref|YP_003863623.1| hypothetical protein FB2170_13853 [Maribacter sp. HTCC2170]
 gi|88709384|gb|EAR01617.1| hypothetical protein FB2170_13853 [Maribacter sp. HTCC2170]
          Length = 437

 Score =  194 bits (494), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 132/419 (31%), Positives = 209/419 (49%), Gaps = 23/419 (5%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N  ++  +   F   GYERV+  + AD+ V+NTC + E A +       R + +
Sbjct: 8   TLGCKLNFSETSTIARGFQKDGYERVDFSEHADMYVINTCSVTENADK-------RFKTI 60

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               IK+     +   GC AQ + E+ L     V++V+G    +++ + +      K  +
Sbjct: 61  VKQAIKKNPQAFIAAIGCYAQLKPEQ-LAAVDGVDLVLGATEKFKISDYIND--LSKNEI 117

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
              +S E   E  S V G Y       AFL +Q+GCD  CTFC +P  RGI  S ++  V
Sbjct: 118 GEVHSCEID-EADSFV-GSYAIGDRTRAFLKVQDGCDYKCTFCTIPLARGISRSDTMDNV 175

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK---CTFSDLLYSLSEIKGLVRLRYTT 267
           +  A ++   G+ EI L G N+  + GKG  G K    TF DL+ +L  + G+ RLR ++
Sbjct: 176 LKNAAEISSKGIKEIVLTGVNIGDF-GKGEFGNKKHEHTFLDLVNALDNVDGVHRLRISS 234

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
             P  + +  I      +  +P+ H+P+QSGSD IL+ M RR+    Y   + RI+ V P
Sbjct: 235 IEPNLLKNETIDFVSKSNSFVPHFHIPLQSGSDEILRLMKRRYQKELYVDRVKRIKDVMP 294

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
              I  D IVGFPGETDD F  T   ++++  +    F YS R  TP S M + V + V+
Sbjct: 295 FACIGVDVIVGFPGETDDHFLETYHFLNELNVSYLHVFTYSERDNTPASEMTDPVPQKVR 354

Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-------HGKEKGKLVGRSPWLQSVV 439
            +R   L+    +++ +F +  + +   VL E        HG  +  +  +SPW  S+V
Sbjct: 355 TKRSKMLRALSVKKRRAFYEGQLNRRKTVLFEGENKDGYIHGFTENYVKVKSPWKPSLV 413


>gi|78183934|ref|YP_376369.1| hypothetical protein Syncc9902_0353 [Synechococcus sp. CC9902]
 gi|123757134|sp|Q3B002|RIMO_SYNS9 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|78168228|gb|ABB25325.1| Protein of unknown function UPF0004 [Synechococcus sp. CC9902]
          Length = 466

 Score =  194 bits (494), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 135/453 (29%), Positives = 230/453 (50%), Gaps = 40/453 (8%)

Query: 33  GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCH-IREKAAEKVYSFLGRIRNLK 91
           GC+ N  D+  M  +    GY      +DA ++V+NTC  I++   E V + +G      
Sbjct: 24  GCEKNRVDTEHMVGLLAEAGYGVSTDEEDASVVVVNTCSFIQDAREESVRTLVG------ 77

Query: 92  NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVD 151
              + E G  L++ AGC+AQ   EE+L   P    +VG   Y  + ++L+R   G+RV  
Sbjct: 78  ---LAEQGKELII-AGCLAQHFQEELLESIPEAKAIVGTGDYQHIVDVLQRVEAGERV-- 131

Query: 152 TDYSVEDKFERLSIVDGGYNRKRG---VTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
              S    F    + D    R+R      A+L + EGCD  C FC++P  RG + SR + 
Sbjct: 132 NRVSAVPSF----VGDEHLPRQRTTDQAVAYLKVAEGCDYRCAFCIIPKLRGDQRSRPIE 187

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK-GLVRLRYTT 267
            +V EA +L + GV E+ L+ Q    + G  L G K   ++LL +L E++   +R+ Y  
Sbjct: 188 SIVAEAHQLAEQGVQELILISQITTNY-GLDLYG-KPKLAELLRALGEVEIPWIRVHY-- 243

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
           ++P  ++  ++ A+ D+  ++PYL LP+Q     +L++MNR   A    ++++ IR   P
Sbjct: 244 AYPTGLTASVVAAYRDVPNVVPYLDLPLQHSHPDVLRAMNRPWQADVNERLLNEIREQLP 303

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
           D  + +  IVGFPGET++ F+     ++   +     F +SP  GT  +++  +VD +V 
Sbjct: 304 DAVLRTTLIVGFPGETEEHFQHLKHFLETQRFDHVGIFTFSPEDGTAAADLPNRVDPDVA 363

Query: 388 AER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVVL 440
             R   L+ LQ+ +  ++   N   VG+ ++VLIE+H  + G+++GR    +P +   V 
Sbjct: 364 QARKDALMALQQPIAAER---NQRWVGKTVDVLIEQHNPQTGEMIGRCARFAPEVDGEVH 420

Query: 441 -----NSKNHNIGDIIKVRITDVKISTLYGELV 468
                + +    G  + V+IT   I  L G +V
Sbjct: 421 VQPGDDGQQAAPGSFVPVKITGADIYDLTGHIV 453


>gi|78213845|ref|YP_382624.1| hypothetical protein Syncc9605_2337 [Synechococcus sp. CC9605]
 gi|123756842|sp|Q3AH63|RIMO_SYNSC RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|78198304|gb|ABB36069.1| Protein of unknown function UPF0004 [Synechococcus sp. CC9605]
          Length = 458

 Score =  194 bits (494), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 136/452 (30%), Positives = 230/452 (50%), Gaps = 38/452 (8%)

Query: 33  GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92
           GC+ N  D+  M  +    GY       DA ++V+NTC   + A E+       +R L  
Sbjct: 16  GCEKNRVDTEHMVGLLAEAGYGVSTDESDAAVVVVNTCSFIQDAREE------SVRTL-- 67

Query: 93  SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDT 152
             + E G  L++ AGC+AQ   EE+L   P    +VG   Y  + ++L+R   G+RV   
Sbjct: 68  VELAEQGKELII-AGCLAQHFQEELLESIPEAKAIVGTGDYQHIVDVLQRVEVGERV--N 124

Query: 153 DYSVEDKFERLSIVDGGYNRKRG---VTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209
             S    F    + D    R+R      AFL + EGCD  C FC++P  RG + SR +  
Sbjct: 125 RVSAVPTF----VGDEHLPRQRTTDQAVAFLKVAEGCDYRCAFCIIPKLRGDQRSRPIES 180

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK-GLVRLRYTTS 268
           +V EA +L   GV E+ L+ Q    + G  L G K   ++LL +L +++   +R+ Y  +
Sbjct: 181 IVAEAHQLAAQGVQELILISQITTNY-GLDLYG-KPKLAELLRALGDVEIPWIRVHY--A 236

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
           +P  ++  ++ A+ ++  ++PYL LP+Q     +L++MNR   A    +++D+IR   PD
Sbjct: 237 YPTGLTPDVLAAYREVPNVVPYLDLPLQHSHPEMLRAMNRPWQADVNDRLLDQIREQLPD 296

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
             + +  IVGFPGET++ F+  M  +++  +     F +SP  GT  +++ ++VD  V  
Sbjct: 297 AVLRTTLIVGFPGETEEHFQHLMGFLERQRFDHVGVFTFSPEDGTAAADLPDRVDPEVAQ 356

Query: 389 ER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVV-- 439
            R   L+ LQ+ +  ++   N   VG+ ++VLIE+H  + G+++GR    +P +   V  
Sbjct: 357 ARKDALMALQQPISAER---NSRWVGRTVDVLIEQHNPQTGEMIGRCARFAPEVDGEVRV 413

Query: 440 ---LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                 +    G ++ V IT   I  L G++V
Sbjct: 414 QPGAEGQQAAPGSLVPVEITGADIYDLNGQMV 445


>gi|254494844|ref|ZP_01051876.2| MiaB-like tRNA modifying enzyme [Polaribacter sp. MED152]
 gi|213690426|gb|EAQ41304.2| MiaB-like tRNA modifying enzyme [Polaribacter sp. MED152]
          Length = 444

 Score =  194 bits (493), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 125/427 (29%), Positives = 219/427 (51%), Gaps = 39/427 (9%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N  ++  +   F ++G+E+V+  + AD+ V+NTC + + A +       R +++
Sbjct: 11  TLGCKLNFSETSTIARNFVNEGFEKVDFEEVADIYVINTCSVTDNADK-------RFKSI 63

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE---RARFGK 147
             + +K+  +  ++  GC AQ + EE L     V++V+G    + +   L    +   G+
Sbjct: 64  VKNALKKNENAFLIAVGCYAQLKPEE-LAAVDGVDLVLGATEKFNVTSYLNDLSKNDLGE 122

Query: 148 ----RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
                +VD D+ V           G Y+      AFL +Q+GCD  CT+C +P  RGI  
Sbjct: 123 VHSCEIVDADFYV-----------GSYSIGDRTRAFLKVQDGCDYKCTYCTIPLARGISR 171

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK---CTFSDLLYSLSEIKGL 260
           S +L  V++ A+++   G+ EI L G N+  + GKG  G K    TF +L+  L  ++G+
Sbjct: 172 SDTLQNVINNAKEISSKGIKEIVLTGVNIGDY-GKGEFGNKKHEHTFLELVKELDLVEGI 230

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            RLR ++  P  + D  I      +  +P+ H+P+QSGSD++LK M RR+    Y   ++
Sbjct: 231 HRLRISSIEPNLLKDETIDFVSKSNSFVPHFHIPLQSGSDKLLKKMKRRYLKNTYTNRVN 290

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           +I+ V P+  I  D IVGFPGETD+ F  T + ++ +  +    F YS R  T   +   
Sbjct: 291 KIKEVMPNACIGVDVIVGFPGETDELFLETYNYLNDLNISYLHVFTYSERPNTEAVDFDG 350

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG--------RS 432
            V +  +A+R   L+    +++ +F ++ +G  + VL E   KE G + G        ++
Sbjct: 351 VVPKKTRAKRSKMLRGLSAKKRRAFYESQLGNTLTVLFENENKE-GYINGFTENYVKVKT 409

Query: 433 PWLQSVV 439
           PW   +V
Sbjct: 410 PWNPELV 416


>gi|312898442|ref|ZP_07757832.1| MiaB-like tRNA modifying enzyme YliG [Megasphaera micronuciformis
           F0359]
 gi|310620361|gb|EFQ03931.1| MiaB-like tRNA modifying enzyme YliG [Megasphaera micronuciformis
           F0359]
          Length = 443

 Score =  194 bits (493), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 138/439 (31%), Positives = 229/439 (52%), Gaps = 30/439 (6%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ D+  M  +   +     +    AD+I++NTC   EKA ++    +     +
Sbjct: 8   SLGCSKNLIDTEVMLGILKDKHMGMTDDPAQADIIIVNTCTFIEKAKQESIDAI-----I 62

Query: 91  KNSRIK-EGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149
           +  R K EG   +++V GC++Q   EE+L+  P V+ ++G  ++ R+ E +   + GKR 
Sbjct: 63  EAGRYKTEGRCKILIVTGCLSQQYQEELLKELPEVDALLGTGSWDRIWEAVTAGKTGKRA 122

Query: 150 --VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
             +D    + D+     +    Y      +A++ I EGC+  CTFC++P+ RG   SR++
Sbjct: 123 CFMDDVSHLYDQNTSRVLTTPTY------SAYVKIGEGCNNGCTFCIIPHVRGPLYSRTV 176

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
             V  E R+L   GV EI L+ Q+  ++ G  L G K    DLL  L +I+G+  +R   
Sbjct: 177 ESVTAEVRQLAAGGVKEINLIAQDTTSY-GFDLAG-KSLLPDLLRELVKIEGIEWIRLFY 234

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
            +P   +D L +     + + PY+ LP+Q  S  +LK MNRR +  +  ++ID++ +   
Sbjct: 235 LYPHFFTDELTELIVKEEKICPYVDLPLQHISQSVLKRMNRRDSQADILKLIDKLTAHGR 294

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
            + + S FIVGFPGET+++F+   D V++  +     F YS   GTP + M +Q+ E VK
Sbjct: 295 KLTLRSTFIVGFPGETEEEFQELCDFVERTKFDAVGVFTYSQEEGTPAAAMADQIPEEVK 354

Query: 388 AE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL--VGR----SPWLQSV 438
            E   RL+ +Q K+ E++   N    G I   ++E+   E G L  VGR    +P +  +
Sbjct: 355 EERYHRLMAIQAKVSEER---NRDLEGSIHPFIVEELTDESGHLQAVGRLDIQAPEVDGL 411

Query: 439 --VLNSKNHNIGDIIKVRI 455
             V ++K    GDII VR+
Sbjct: 412 TYVEDAKGLKEGDIIPVRV 430


>gi|293115612|ref|ZP_05792317.2| tRNA-I(6)A37 thiotransferase enzyme MiaB [Butyrivibrio crossotus
           DSM 2876]
 gi|292809090|gb|EFF68295.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Butyrivibrio crossotus
           DSM 2876]
          Length = 444

 Score =  194 bits (493), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 130/445 (29%), Positives = 235/445 (52%), Gaps = 31/445 (6%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDD-ADLIVLNTCHIREKAAEKV 80
           I  ++  + S GC++N Y++  M+ M  S GYE V   ++ AD+ ++NTC +   A  K 
Sbjct: 5   ITMKKCALHSLGCKVNSYETQAMQKMMESAGYEIVPFGEEIADIYIINTCSVTNIADRKS 64

Query: 81  YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140
              + + + L         + +V  AGC  ++ G+ I      V++V+G      L E+L
Sbjct: 65  RQMIHKAKKL-------NPEAVVAAAGCYVESAGDNI---DEDVDIVIGNNEKSHLIEIL 114

Query: 141 -ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
            E      +    D      F+ L+I D      R   A++ IQ+GC++FC++C++PY R
Sbjct: 115 NEYFEHMDKEKSVDIGKATGFDELNI-DSPLEHTR---AYVKIQDGCNRFCSYCIIPYVR 170

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS--DLLYSLSEI 257
           G   SR    V+ E +++  +G  E+ L G +++++   GLD +  T    D++ +++ I
Sbjct: 171 GRIRSRKPDDVMAEIKRVAASGCKEVVLTGIHLSSY---GLDFKDSTVKLIDVIEAVNRI 227

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
           +G+ R+R  +  P  +++  ++       + P+ HL +QSG D  LK MNRR+   EY +
Sbjct: 228 EGIERIRLGSLEPLIVTEEFVRRLAKCKKICPHFHLSLQSGCDETLKRMNRRYNVDEYYK 287

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
            ++ +R   PD A+++D IVGFPGET+++F  T   ++K+ + +   FKYS R GT    
Sbjct: 288 GVELLREYFPDAAVTTDVIVGFPGETEEEFNITKKYLEKVCFYEMHVFKYSRRKGTAADK 347

Query: 378 MLEQVDENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHG--KEKGKLVGRS 432
           M +Q+ EN+K+ER   LL L + L      + +  +G+ ++VL+E++   + K  ++G +
Sbjct: 348 MPDQIPENIKSERSTELLELNEILSN---GYREKYIGKKVKVLLEENHIIENKKYIIGFT 404

Query: 433 PWLQSVVLNSKNHNI--GDIIKVRI 455
                V L +    +    I+ VR+
Sbjct: 405 DTYVRVALENPEEKLYTNQIVNVRV 429


>gi|304436321|ref|ZP_07396298.1| MiaB family RNA modification enzyme [Selenomonas sp. oral taxon 149
           str. 67H29BP]
 gi|304370676|gb|EFM24324.1| MiaB family RNA modification enzyme [Selenomonas sp. oral taxon 149
           str. 67H29BP]
          Length = 442

 Score =  194 bits (493), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 143/455 (31%), Positives = 226/455 (49%), Gaps = 37/455 (8%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEK-VYSFLGRIRN 89
           S GC  N+ D+  M  +    G +  N   +AD++++NTC   + A E+ + + LG    
Sbjct: 7   SLGCAKNLVDTEVMLGIMREHGIDITNDPSEADILIVNTCAFIQSAKEESITTVLGMADY 66

Query: 90  LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149
            +  R +      ++VAGC+ Q  G+++L   P  + ++G   + R+ E++E    G+R+
Sbjct: 67  KETGRCRS-----LIVAGCLGQRYGQQLLDEIPEADAIIGTGAWSRIMEVIEATLKGRRL 121

Query: 150 V-----DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
           +     DT Y    K  RL             TA++ I EGCD  C FC +P  RG   S
Sbjct: 122 LIAGKDDTIYDA--KTPRLRTTPN-------YTAYVKIAEGCDHRCAFCAIPLIRGSFRS 172

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG-EKCTFSDLLYSLSEIKGLVRL 263
           R +  +V E R+L   GV E+ L+ Q+   +   GLD  +K     LL  L++I G+  +
Sbjct: 173 RPMEDIVAEGRELAAAGVRELVLIAQDSANY---GLDCYQKPMLPTLLRELAKIDGIAWI 229

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R   S+P+  +D LI+       ++ Y+ LP+Q   D +L+SMNR  T     ++I ++R
Sbjct: 230 RVLYSYPKYFTDELIEVFATEPKVVKYVDLPLQHAHDAVLRSMNRPDTRAGMEELIAKLR 289

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           +  P +AI S FIVGFPGETD  ++     V+K  + +   F YS    T  + M ++V 
Sbjct: 290 ARIPGVAIRSTFIVGFPGETDAQYQTLRRFVEKQRFDKVGIFTYSEEEDTAAAAMGKKVS 349

Query: 384 ENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRS----PWL 435
           E V  ER   L+ LQ K+ E+    N     Q ++VLIE H  E+ G  VGRS    P +
Sbjct: 350 EEVMQERYHDLMSLQSKISEE---INIGLEHQELDVLIEGHDAEQSGIAVGRSYREAPEV 406

Query: 436 --QSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
             Q  +        G+I++VR+       + GE V
Sbjct: 407 DGQIYIEGDAEGAPGEIVRVRLLQGFTYDIVGERV 441


>gi|217967713|ref|YP_002353219.1| MiaB-like tRNA modifying enzyme [Dictyoglomus turgidum DSM 6724]
 gi|217336812|gb|ACK42605.1| MiaB-like tRNA modifying enzyme [Dictyoglomus turgidum DSM 6724]
          Length = 417

 Score =  194 bits (493), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 125/393 (31%), Positives = 210/393 (53%), Gaps = 43/393 (10%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRN- 89
           ++GC++N Y++  ++ +  + G+E V    +ADLI +N+C +   A  K    +  I+N 
Sbjct: 8   TFGCKVNQYETENLKILARNAGFEIVPFGKEADLIFINSCAVTHVAERKARRLINLIKNR 67

Query: 90  LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149
             N++I         +AGC A  E   +     +++ V+  +  +          FG   
Sbjct: 68  FPNAKI--------ALAGCYA--ERLNLSSEKLVLDFVLDNKQKWEF--------FGGSE 109

Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209
                + ED+                  A L IQ+GC+ FCT+C+VPY RG E S+   +
Sbjct: 110 DSAFVTSEDR----------------ARAILKIQDGCNNFCTYCIVPYLRGRERSKPFDK 153

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSH 269
           V++EA+KL++NG  EI L G  + A+ G+ L G+K   S LL  L E+ GLV++R ++  
Sbjct: 154 VMEEAQKLVENGFKEIVLTGIRLGAY-GRDL-GDKDALSKLLLKLFEMDGLVKIRLSSIE 211

Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329
           P D+++ LIK   D   L  + H+P+QSG D ILK MNRR+    + QI+ ++R   PD+
Sbjct: 212 PMDITEGLIKL-ADHPKLCKHWHIPLQSGDDEILKKMNRRYDTKYFEQIVYKLREKVPDV 270

Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV--K 387
           AI++D IVG+P E++++F  T    +++G+ +   F YSPR  TP   +     E +  +
Sbjct: 271 AITTDIIVGYPEESEENFNNTYLFAERMGFMRIHVFPYSPRPFTPAYKLKPLPYEVITKR 330

Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
            E+L+ L   L E+ VS     + + +EV++E+
Sbjct: 331 KEKLIKLSNDLWERYVS---KFIEKELEVMVEE 360


>gi|37523886|ref|NP_927263.1| hypothetical protein gll4317 [Gloeobacter violaceus PCC 7421]
 gi|81708224|sp|Q7NDB8|RIMO_GLOVI RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|35214892|dbj|BAC92258.1| gll4317 [Gloeobacter violaceus PCC 7421]
          Length = 437

 Score =  194 bits (493), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 138/462 (29%), Positives = 230/462 (49%), Gaps = 45/462 (9%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           +P    V   GC+ N  D+  M  +    GY+  +  D A+ +++NTC           S
Sbjct: 1   MPATIAVTHLGCEKNRIDTEHMLGLLAQAGYQIDSDEDKAEYVLVNTC-----------S 49

Query: 83  FLG-----RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLP 137
           F+G      +R L N  + E G   +++AGC+ Q   +E+L+  P    +VG   Y+R+ 
Sbjct: 50  FIGPARTESVRTLVN--LAEQGKK-IIIAGCLPQMFRDELLKEIPEAVAIVGTGDYHRIV 106

Query: 138 ELLERARFGKRV----VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC 193
           E++ER+R G+RV        Y  ++   R       Y       A+L I EGCD  C FC
Sbjct: 107 EVVERSRTGERVSLVSATPTYIADEHLPR-------YRTTTEAVAYLKIAEGCDYRCAFC 159

Query: 194 VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS 253
           ++P+ RG + SR +  +V EA++L   GV E+ L+ Q ++   G  L G K   +DLL +
Sbjct: 160 IIPHLRGDQRSRPIESIVAEAKQLASEGVKELILISQ-ISTNYGLDLYG-KPRLADLLRA 217

Query: 254 LSEIK-GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
           L E+    VR+ Y  ++P  ++D L+ A      ++PY  +P+Q     +L++MNR   A
Sbjct: 218 LGEVDIPWVRVHY--AYPTGLTDELLTAVEQTANVLPYFDVPLQHSHPEVLRAMNRPWQA 275

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
               ++++RIR   P+  + +  IVGFPGE++  F      V++  +     F YS    
Sbjct: 276 DLNTRLLERIRERLPEATLRTTLIVGFPGESEAHFAHLCAFVERSEFDHVGVFAYSREEN 335

Query: 373 TPGSNMLEQVDENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV 429
           T  +N+  Q+ E +K  R   L+ LQ+ + +++   N + VG+++ VLIE+   +K   +
Sbjct: 336 TAAANLEGQIPEAIKKRRRRDLMRLQQTISQRR---NASQVGRVVPVLIEQENTQKKVWL 392

Query: 430 GR----SPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
           GR    SP +   V+      +  +I VRIT      L GE+
Sbjct: 393 GRSARFSPEIDGQVIVCGGAALNQLIPVRITAATPYDLCGEV 434


>gi|123965349|ref|YP_001010430.1| Fe-S oxidoreductase [Prochlorococcus marinus str. MIT 9515]
 gi|238066582|sp|A2BU62|RIMO_PROM5 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|123199715|gb|ABM71323.1| possible Fe-S oxidoreductase [Prochlorococcus marinus str. MIT
           9515]
          Length = 454

 Score =  194 bits (493), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 133/458 (29%), Positives = 236/458 (51%), Gaps = 50/458 (10%)

Query: 33  GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHI----REKAAEKVYSFLGRIR 88
           GC+ N+ D+  M+ +   +GYE  N+++DA ++V+NTC      RE++  K+  F  + +
Sbjct: 22  GCEKNLVDTEHMQGLLDKEGYEVGNNLEDAKVVVVNTCSFIETAREESIRKILEFTDQGK 81

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
                         V+VAGC+AQ   EE+L+  P +  +VG   Y ++ +++ R   G+ 
Sbjct: 82  Q-------------VIVAGCMAQHFKEELLKEIPEIKALVGTGDYQKIAKVMNRVEKGEI 128

Query: 149 VVDT----DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
           V +     ++  ++K  RL  +D     ++   A+L I EGCD  C FC++P  RG + S
Sbjct: 129 VNEVSKVPEFIADEKIPRL--ID-----QKKFVAYLRIAEGCDYNCAFCIIPKLRGPQRS 181

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK-GLVRL 263
           R++  ++ EA  L + G+ EI L+ Q +    G+ + G K + + LL  LS++    +R+
Sbjct: 182 RTIESIILEATNLANQGIQEIILISQ-ITTNYGQDIYG-KPSLARLLKELSKVSVPWIRI 239

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
            Y  ++P  ++D +IKA  D + ++PY  LP+Q     +LKSMNR   A     I+ +IR
Sbjct: 240 HY--AYPTGLTDEVIKAFKDSNNIVPYFDLPLQHSHSDVLKSMNRPWQASLNESILSKIR 297

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              P   + +  IVGFPGE    F   +D + K  +     F +SP  GT   ++  +V 
Sbjct: 298 DQIPSAVLRTSLIVGFPGEEQKHFLHLLDFLHKHKFDHVGVFIFSPEEGTSAFDLPNRVP 357

Query: 384 ENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQ 436
             +   + + ++ +Q+ + +++   N   VG  ++VL+EK  K   +L+GRS    P + 
Sbjct: 358 SEIADARKDNIMSIQQNISKKK---NQLYVGTKVKVLVEKISK-NNELIGRSYHFAPEID 413

Query: 437 SVVLNS------KNHNIGDIIKVRITDVKISTLYGELV 468
             V+ S      +N+ +G  ++  I       LYGE++
Sbjct: 414 GNVILSIKKNVIENNYVGKFVEANICFADEYDLYGEVI 451


>gi|154482583|ref|ZP_02025031.1| hypothetical protein EUBVEN_00250 [Eubacterium ventriosum ATCC
           27560]
 gi|149736608|gb|EDM52494.1| hypothetical protein EUBVEN_00250 [Eubacterium ventriosum ATCC
           27560]
          Length = 437

 Score =  194 bits (493), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 133/441 (30%), Positives = 219/441 (49%), Gaps = 40/441 (9%)

Query: 33  GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92
           GC++N Y++  M  +    GYE V+  D AD+ ++NTC +   A  K    L + +    
Sbjct: 10  GCKVNSYETEAMTQLLKKAGYEIVSFQDQADVYIINTCSVTNMADRKSRQMLHKAK---- 65

Query: 93  SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ----------TYYRLPELLER 142
              K+  + +VV  GC  Q   E++ +   I ++VVG             YY   E  E+
Sbjct: 66  ---KQNPNAVVVATGCYVQTATEKVAQDLSI-DLVVGNNRKKDIVEILNEYYAEKEAGEQ 121

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            +  + V+D +++  D++E L I     + +    A L IQ+GC+ FC++C++PY RG  
Sbjct: 122 VK-EEYVIDINHT--DEYEDLEISTVTEHTR----AHLKIQDGCNNFCSYCIIPYARGRI 174

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR++  +  E  +L  +G  EI L G N++ +   G         D++     + G+ R
Sbjct: 175 RSRTMESIKAELERLSASGFKEIVLTGINLSCYDDNGK-----KLIDVIEMADNVNGIER 229

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R  +  P  +++  ++  G +  + P+ H  +QSG D+ LK+MNR +T+ EY +    I
Sbjct: 230 IRLGSLDPEVVTEDFVERLGKVKKICPHFHFSLQSGCDKTLKAMNRHYTSDEYYEKCQLI 289

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R    + A ++D IVGFPGET++D+ ++ + V K+ +A+   FKYS R GT  + M  Q+
Sbjct: 290 RKYIDNPAFTTDVIVGFPGETEEDYISSREFVKKVKFAELHVFKYSKRDGTVAAKMPNQI 349

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV--- 439
           DE +K  R   L K   E    F  A +GQ   VL E    EK  L  +  W+   V   
Sbjct: 350 DEKIKTLRSEDLIKTGEELTKEFRQAKIGQDTTVLFE----EKILLDNKEYWVGHTVDYI 405

Query: 440 ---LNSKNHNIGDIIKVRITD 457
              +  K +  G I KV + D
Sbjct: 406 KIAVPEKENLEGQIRKVNVKD 426


>gi|95930239|ref|ZP_01312977.1| MiaB-like tRNA modifying enzyme [Desulfuromonas acetoxidans DSM
           684]
 gi|95133702|gb|EAT15363.1| MiaB-like tRNA modifying enzyme [Desulfuromonas acetoxidans DSM
           684]
          Length = 428

 Score =  194 bits (492), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 122/439 (27%), Positives = 220/439 (50%), Gaps = 17/439 (3%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           + + GC+ N ++S  ME M   QGY+ V     A+L+++NTC +      +    + R R
Sbjct: 6   IVTLGCKANQFESAAMERMLREQGYQIVPFEQGAELVIVNTCTVTSATDAQSRKLVRRAR 65

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
            L        G   +VV GC AQ + ++I    P V  V+G      L ++L   + G +
Sbjct: 66  RLN-------GQCRIVVTGCYAQIQPQQIAEL-PGVMYVIGNSEKQDLIDIL--CQEGPQ 115

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           V   D + + +   L I     + +    AF+ IQ GC+ FC++C++PY RG   S + S
Sbjct: 116 VQVGDIASQQQCPDLKIASFSEHSR----AFVQIQSGCNAFCSYCIIPYARGRSRSVNTS 171

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
            VVD+  +L+  G  E+ L G ++  + G+ L   +CT +DLL +L       R+R  + 
Sbjct: 172 AVVDQVNQLVAGGYREVVLTGIHIGNY-GQDLT-PQCTLTDLLNALLTQTDGCRIRLGSI 229

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
            P+++++ LI        + P+ H+P+QSG D +L+ MNR ++  ++   ++ +    P 
Sbjct: 230 EPQEVNEALIDCVQHSSRICPHFHIPLQSGCDDVLQQMNRHYSIRQFHDTVELLCQKIPR 289

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           ++I  D I GFPGET+   R T + +  +       F +S R GTP + M +Q+  ++  
Sbjct: 290 VSIGIDVISGFPGETEAQHRHTCEFISSLPVHYLHVFPFSARPGTPAATMPDQIPGDIAK 349

Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIG 448
           +R   L+    E+   + +  +G++++V++E   K   +  G S    +V++  +    G
Sbjct: 350 QRAAELRVLAEEKASQYREQFIGRLVDVVLESRTK-NNQWQGTSAEYLTVLVAGEQGAAG 408

Query: 449 DIIKVRITDVKISTLYGEL 467
           +++ V I  V  + L G L
Sbjct: 409 ELVSVEIVGVSQNFLVGTL 427


>gi|254479101|ref|ZP_05092453.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Carboxydibrachium
           pacificum DSM 12653]
 gi|214034950|gb|EEB75672.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Carboxydibrachium
           pacificum DSM 12653]
          Length = 436

 Score =  194 bits (492), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 129/446 (28%), Positives = 232/446 (52%), Gaps = 28/446 (6%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N  DS +M  +   +GY  VN    AD+I++NTC   E A ++   ++ ++  L
Sbjct: 8   SLGCPKNSVDSEKMLALLKEKGYNIVNDEKKADVIIINTCAFIEDAKKESIEYIIQMGEL 67

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
           K  R+K      ++  GC+++   +E+++  P ++ V+G   + ++ +++E  + GK+V+
Sbjct: 68  KKKRLK-----YLIATGCLSERYNKELIKELPELDAVIGTGDFTQIVDVIEEVKKGKKVL 122

Query: 151 D---TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
                D   ++   R+      Y       A+L I EGC   C+FC++P  RG   SR +
Sbjct: 123 KYGHPDLLNDEGIPRILTTPPYY-------AYLKIAEGCSNACSFCIIPKLRGKYKSRKM 175

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYT 266
             +++EA++L   GV E+ ++ Q+   +   G+D  +K     LL  LS+I+ L  +R  
Sbjct: 176 ENIIEEAQELARKGVKELIIIAQDTTKY---GIDLYKKLMLPQLLRELSKIEELKWIRLL 232

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
            ++P  ++D LI+   + + ++ Y+ +P+Q  S+ +LK MNR  T  +  ++I ++RS+ 
Sbjct: 233 YAYPDSVTDELIEEIKNNEKIVKYIDIPLQHSSESVLKRMNRGTTRRKIEEVISKLRSI- 291

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           P + + + F+VGFPGET+++F    + + +  + +   F YS   GT    M  Q+ + V
Sbjct: 292 PGMVMRTTFMVGFPGETEEEFEDLKNFIKEKRFERVGVFTYSREEGTKSYYMKPQIRKKV 351

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVL-- 440
           K +R   L +  ++    FN + +G  +EVLIE  G E G   GRS    P +  +V   
Sbjct: 352 KLKRQEELMEIQKQISYEFNMSKIGTKLEVLIE--GFEDGVYYGRSYMDAPEIDGLVYVR 409

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGE 466
           + K    GD + V + D     L GE
Sbjct: 410 SEKKLFPGDFVTVTVVDAFEYDLVGE 435


>gi|160895345|ref|ZP_02076116.1| hypothetical protein CLOL250_02904 [Clostridium sp. L2-50]
 gi|156863038|gb|EDO56469.1| hypothetical protein CLOL250_02904 [Clostridium sp. L2-50]
          Length = 439

 Score =  194 bits (492), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 123/404 (30%), Positives = 226/404 (55%), Gaps = 26/404 (6%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  M ++    G   V+  + AD+ ++NTC +   A +K    + R + L
Sbjct: 11  TLGCKVNQYETDGMIELLKEAGMTAVSFEEKADVYLINTCSVTNMADKKSRQMIHRAKKL 70

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
                    D +V+ AGC  QA  ++++    I ++++G      +  +LE       V 
Sbjct: 71  -------NPDAVVIAAGCYVQAAKDKLMEDDRI-SIIIGNNKKKDIVRILEDY-LQAGVT 121

Query: 151 DT---DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
           D    D S E ++E L+I +      R   A++ IQ+GC++FC++C++PY RG   SR +
Sbjct: 122 DEGMLDISAEKEYEPLTI-NSTLEHTR---AYVKIQDGCNQFCSYCIIPYVRGRIRSRDI 177

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
           + +++E  +L   GV EI L G +++++ GK  + E    +D++ ++S+I+ + R+R  +
Sbjct: 178 ASIIEEVERLALTGVKEIVLTGIHISSY-GKDKENE-VGLADVIDAISKIESIKRIRLGS 235

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
             P  ++D  I    D + + P+ HL +QSG + +LK MNR++T  EY +  + +R    
Sbjct: 236 LEPSIITDEFIDRIVDNEKVCPHFHLSLQSGCNTVLKRMNRKYTCEEYFEKCEMLRKAFD 295

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
             A+++D IVGFPGET+++FR T+D + K+   +   FK+SPR GT  + M +QV   +K
Sbjct: 296 RPALTTDVIVGFPGETEEEFRETVDYLTKLNLYEMHIFKFSPRQGTVAAGMKDQVAPEIK 355

Query: 388 AER---LLCLQKKLREQ-QVSFNDACVGQIIEVLIEKHGKEKGK 427
            +R   LL L ++ ++  + SF     G+ ++VL+E+  + +GK
Sbjct: 356 NQRSDVLLALSERNKQAYEASFR----GENLDVLVEEKVRREGK 395


>gi|219669148|ref|YP_002459583.1| MiaB-like tRNA modifying enzyme YliG [Desulfitobacterium hafniense
           DCB-2]
 gi|219539408|gb|ACL21147.1| MiaB-like tRNA modifying enzyme YliG [Desulfitobacterium hafniense
           DCB-2]
          Length = 442

 Score =  194 bits (492), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 140/458 (30%), Positives = 232/458 (50%), Gaps = 33/458 (7%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++  V + GC  N  DS  M     ++ Y+ VN  + AD+I++NTC   E A  +    +
Sbjct: 3   KKVAVVTLGCPKNQVDSEIMTGHMMTK-YQIVNEPEQADIIIINTCTFIESAKAESIDMI 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVA-GCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
                L+ S+ KE G    +VA GC+AQ  G+E+L   P ++ ++G      + E LE A
Sbjct: 62  -----LQMSQYKEEGQCQTLVATGCLAQRYGDELLAEIPELDGIMGTGNVAEILETLEEA 116

Query: 144 RFGK-RVVDTD---YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
              K R +  +   +  ++   R+ +    Y       A++ + EGCD +CT+C++P+ R
Sbjct: 117 EKSKVRRISAEAPAFIYDETMPRVRLSPKQY-------AYVKVAEGCDNYCTYCIIPHVR 169

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G   SR+   ++ E   +   GV E+ L+ Q+   + GK   GE      L+  ++ I+G
Sbjct: 170 GHFRSRTQESILREVEAMASEGVKEVLLIAQDTTRY-GKDRYGEY-RLPSLIKEIAGIEG 227

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           +  +R    +P   +D LI    +   +  YL LP+Q   D++L  MNRR T  E   +I
Sbjct: 228 IEWIRLMYCYPELFTDELITVMKETPKVCRYLDLPLQHAHDKVLAEMNRRGTIREAEGLI 287

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            ++R   PDI + +  I GFPGET+++F+A +D   KI + +  +F YS    TP +   
Sbjct: 288 HKLRQEIPDIRLRTTMITGFPGETEEEFQAVVDFAKKIRFDRLGAFAYSQEESTPAAQRE 347

Query: 380 EQVDENVKAER---LLCLQKKLR-EQQVSFNDACVGQIIEVLIEKHGKEK---GKLVGRS 432
           +QV E ++ +R   L+ LQ  +  EQQ  +    VGQ ++VLIE+   ++   G+  G +
Sbjct: 348 DQVPEEIRQQRRDQLMELQHDIAYEQQQRW----VGQTLKVLIEEALPDQRWVGRSEGDA 403

Query: 433 PWLQSVVL--NSKNHNIGDIIKVRITDVKISTLYGELV 468
           P +  VV   +     IGD + V+IT      L GE+V
Sbjct: 404 PEIDGVVYVDSPGELEIGDFVLVKITGADSYDLMGEVV 441


>gi|242239728|ref|YP_002987909.1| ribosomal protein S12 methylthiotransferase [Dickeya dadantii
           Ech703]
 gi|242131785|gb|ACS86087.1| MiaB-like tRNA modifying enzyme YliG [Dickeya dadantii Ech703]
          Length = 467

 Score =  194 bits (492), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 142/456 (31%), Positives = 233/456 (51%), Gaps = 46/456 (10%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ DS R+     ++GY+ V S +DADL+++NTC   + A ++    +G   N 
Sbjct: 40  SLGCPKNLVDSERILTELRTEGYQVVPSYNDADLVIVNTCGFIDSAVQESLEAIGEALN- 98

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
                 E G   V+V GC+   E + I    P V  + GP +Y ++      +     V 
Sbjct: 99  ------ENGK--VIVTGCLGAKENQ-IREVHPKVLEITGPHSYEQV-----LSHVHHYVP 144

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
             ++   ++F  L+   G     R   A+L I EGCD  CTFC++P  RG   SR +  V
Sbjct: 145 KPEH---NQFTSLTPAQGVKLTPRHY-AYLKISEGCDHRCTFCIIPSMRGDLDSRPIGAV 200

Query: 211 VDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYSLSEIKG 259
           +DEAR+L D GV E+ ++ Q+ +A           W G+ +   K +  DL   L+ +  
Sbjct: 201 LDEARRLKDAGVKELLVISQDTSAYGADVKHRTGFWNGQPV---KTSMVDLCEQLATLGI 257

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
            VRL Y   +P   +   + A G +   +PYL +P+Q  S +ILK M R        + I
Sbjct: 258 WVRLHYVYPYPHVDTVIPLMAAGKI---LPYLDIPLQHASPKILKLMKRPGAVERTLERI 314

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            R R + P++ + S FIVGFPGET++DF+  +D + +    +   FK+SP  G   +++ 
Sbjct: 315 KRWREICPELTLRSTFIVGFPGETEEDFQMLLDFLTEAQLDRVGCFKFSPVDGAAANDLP 374

Query: 380 EQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPW 434
           + V E VK +   R + LQ+++  +++    A VG+ ++VLI++  +E   G+ +  +P 
Sbjct: 375 DPVPEAVKEDRYHRFMQLQQEISARRLQ---AKVGRELKVLIDEVDEEGAIGRSMADAPE 431

Query: 435 LQ-SVVLN-SKNHNIGDIIKVRITDVKISTLYGELV 468
           +  +V LN  K  N+GD++ VRI       L+G L+
Sbjct: 432 IDGAVYLNGEKRVNVGDLVTVRIEHADEYDLWGSLI 467


>gi|82703100|ref|YP_412666.1| hypothetical protein Nmul_A1979 [Nitrosospira multiformis ATCC
           25196]
 gi|123754305|sp|Q2Y7J7|RIMO_NITMU RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|82411165|gb|ABB75274.1| SSU ribosomal protein S12P methylthiotransferase [Nitrosospira
           multiformis ATCC 25196]
          Length = 448

 Score =  194 bits (492), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 139/452 (30%), Positives = 225/452 (49%), Gaps = 48/452 (10%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
            P+  FV S GC   + DS ++     ++GYE  ++ +DADL+V+NTC   + A E+   
Sbjct: 8   TPRIGFV-SLGCPKALVDSEQILTQLRAEGYETSSTYEDADLVVVNTCGFIDSAVEESLD 66

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRS-PIVNVVVGPQTYYRLPELLE 141
            +G         + E G   V+V GC+   EG ++++++ P V  V GP   + LPE++ 
Sbjct: 67  AIGEA-------LAENGK--VIVTGCLGAKEGGDVVKQAHPQVLAVTGP---HALPEVMA 114

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
                       Y+     + + +    Y       A+L I EGC+  CTFC++P  RG 
Sbjct: 115 AVHMHLPQPHDPYTSLIPPQGIKLTPRHY-------AYLKISEGCNHRCTFCIIPSMRGD 167

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDL 250
            +SR + QV++EA  L++ GV E+ ++ Q+ +A           W+G+ L   K   +DL
Sbjct: 168 LVSRPIHQVMEEAENLVNAGVRELLVISQDTSAYGVDVKYRTGFWQGRPL---KTRMTDL 224

Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
             SL E+   VRL Y   +P       + A G +   +PYL +P Q  S RILK+M R  
Sbjct: 225 ARSLGELGVWVRLHYVYPYPHVDEVIPLMAEGKI---LPYLDVPFQHASPRILKAMKRPA 281

Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370
            +      I R R V PDI + S FIVGFPGET+ +F   ++ +++    +   F YSP 
Sbjct: 282 NSENNLSRIRRWREVCPDITLRSTFIVGFPGETEAEFEQLLEFLEEAQLDRVGCFAYSPV 341

Query: 371 LGTPGSNMLEQVDENVKAERLLC---LQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-- 425
            G   + + + V E VK ER  C   +Q+K+  ++++     +G+ + VLI+   K K  
Sbjct: 342 EGAAANALPDPVPEEVKEERRACFMAIQEKISAERLARK---IGKRMIVLIDDVSKNKAV 398

Query: 426 GKLVGRSPWLQSVVLNSKNHNI--GDIIKVRI 455
            +    +P +  +V   K  N+  G+ I+V I
Sbjct: 399 ARSTADAPEIDGLVYIGKAKNVKPGEFIEVEI 430


>gi|271500868|ref|YP_003333893.1| MiaB-like tRNA modifying enzyme YliG [Dickeya dadantii Ech586]
 gi|270344423|gb|ACZ77188.1| MiaB-like tRNA modifying enzyme YliG [Dickeya dadantii Ech586]
          Length = 467

 Score =  194 bits (492), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 142/456 (31%), Positives = 231/456 (50%), Gaps = 46/456 (10%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ DS R+     ++GY+ V S +DADL+++NTC   + A ++    +G   N 
Sbjct: 40  SLGCPKNLVDSERILTELRTEGYQVVPSYNDADLVIVNTCGFIDSAVQESLEAIGEALN- 98

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
                 E G   V+V GC+   E + I    P V  + GP +Y ++      +     V 
Sbjct: 99  ------ENGK--VIVTGCLGAKENQ-IREVHPKVLEITGPHSYEQV-----LSHVHHYVP 144

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
             ++   D F  L    G     R   A+L I EGCD  CTFC++P  RG   SR +  V
Sbjct: 145 KPEH---DPFTSLIPAQGVKLTPRHY-AYLKISEGCDHRCTFCIIPSMRGDLDSRPIGSV 200

Query: 211 VDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYSLSEIKG 259
           +DEA++L + GV E+ ++ Q+ +A           W G+ +   K +   L   LS +  
Sbjct: 201 LDEAKRLAEAGVKELLVISQDTSAYGADVKHRTGFWNGQPV---KTSMVSLCEQLSTLGL 257

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
            VRL Y   +P       + A G +   +PYL +P+Q  S +ILK M R        + I
Sbjct: 258 WVRLHYVYPYPHVDDVIPLMAAGKV---LPYLDIPLQHASPKILKLMKRPGAVERTLERI 314

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            R R + PD+ + S FIVGFPGET++DF+  +D + +    +   F+YSP  G   +++ 
Sbjct: 315 KRWREICPDLTLRSTFIVGFPGETEEDFQMLLDFLQEAQLDRVGCFRYSPVEGAAANDLP 374

Query: 380 EQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPW 434
           +QV E+VK +   R + +Q+++  Q++    A VG+ ++VLI++  +E   G+ +  +P 
Sbjct: 375 DQVPEDVKEDRYHRFMQVQQQISSQRLL---AKVGRELKVLIDEVDEEGAIGRSMADAPE 431

Query: 435 LQ-SVVLNSKNH-NIGDIIKVRITDVKISTLYGELV 468
           +  +V LN +N   +GD++ V+I       L+G LV
Sbjct: 432 IDGAVYLNGENRVKVGDLVTVKIEHADEYDLWGSLV 467


>gi|154483626|ref|ZP_02026074.1| hypothetical protein EUBVEN_01330 [Eubacterium ventriosum ATCC
           27560]
 gi|149735536|gb|EDM51422.1| hypothetical protein EUBVEN_01330 [Eubacterium ventriosum ATCC
           27560]
          Length = 423

 Score =  194 bits (492), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 138/442 (31%), Positives = 219/442 (49%), Gaps = 39/442 (8%)

Query: 44  MEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLV 103
           M  +    GYE  +    AD+I++N+C   + A E+    +  +   K    +EG    +
Sbjct: 1   MSGLLSKAGYEFTDDETQADIIIINSCCFIKDAKEESIETIFEMARYK----EEGQCKAL 56

Query: 104 VVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERL 163
           V+AGC+AQ   EEI    P V++ +G      +   L          D  +    K E L
Sbjct: 57  VLAGCLAQRYHEEIKTEIPEVDICIGTTAIDSIVSAL----------DDYFKEHKKKEYL 106

Query: 164 SIVD--GGYNRKR-----GVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARK 216
             VD     N  R     G  A+L I EGCDK CT+C++P  RG   S  +  ++DEA+K
Sbjct: 107 KDVDFLAAANAPRNLSTMGSYAYLKIAEGCDKHCTYCIIPKVRGNYRSVKMEYLIDEAKK 166

Query: 217 LIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDC 276
           L + GV E+ L+ Q    + GK + G+K +   LL  L++I G+  +R    +P ++ D 
Sbjct: 167 LAEQGVKELILVAQETTMY-GKDIYGKK-SLHILLKELAKISGIYWIRILYCYPEEIYDE 224

Query: 277 LIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFI 336
           LI        +  YL LP+Q  SD ILK M RR T  + R II ++R   PDI + +  I
Sbjct: 225 LIDVIASEKKICNYLDLPIQHASDTILKKMGRRTTNKDLRDIIGKLRKRIPDIVLRTTLI 284

Query: 337 VGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER---LLC 393
            GFPGET++D +  +D V+++ + +   F YS    TP +NM  Q+DE VK +R   ++ 
Sbjct: 285 TGFPGETEEDHQINLDFVNEMEFERLGVFTYSAEENTPAANMPNQIDEEVKEDRRNDIME 344

Query: 394 LQKKLREQQVSFNDA--CVGQIIEVLIEKHGKEKGKLVGRS----PWLQS--VVLNSKNH 445
           LQ     Q + F+++   +G+    +IE     +   +GR+    P + S   ++  +  
Sbjct: 345 LQ-----QDIVFDNSEKHIGKTYIAMIEGRISGENAYMGRTYMDVPGIDSNIFIITDEEL 399

Query: 446 NIGDIIKVRITDVKISTLYGEL 467
             GD +KV++T +    L G+L
Sbjct: 400 MTGDFVKVKVTGINDYDLIGQL 421


>gi|251793811|ref|YP_003008543.1| ribosomal protein S12 methylthiotransferase [Aggregatibacter
           aphrophilus NJ8700]
 gi|247535210|gb|ACS98456.1| conserved hypothetical protein [Aggregatibacter aphrophilus NJ8700]
          Length = 443

 Score =  194 bits (492), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 142/464 (30%), Positives = 225/464 (48%), Gaps = 47/464 (10%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
            P   FV S GC  N+ DS R+     + GY  + S ++ADL+++NTC   + A ++   
Sbjct: 4   TPNIGFV-SLGCPKNLVDSERILTELRANGYNIIPSYENADLVIVNTCGFIDSAVQESLE 62

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +G         ++E G   V+V GC+   E ++I +  P V  V GP +Y  +      
Sbjct: 63  AIGE-------ALEENGK--VIVTGCLGAKE-DQIRQVHPKVLEVSGPHSYETV-----M 107

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            +  K V    Y   + +E L    G     +   A+L I EGCD  CTFC++P  RG  
Sbjct: 108 TQVHKYVPKPAY---NPYESLMPAQGVKLTPKHY-AYLKISEGCDHRCTFCIIPSMRGDL 163

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNA---------------WRGKGLDGEKCTF 247
            SR ++QV+DEA++L+D GV E+ ++ Q+ +A               W G  +   K   
Sbjct: 164 DSRPITQVLDEAKRLVDAGVKELLIVSQDTSAYALDQTKENQNKTVFWNGMPI---KNNL 220

Query: 248 SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307
             L   L  +   VRL Y   +P       + A G L   +PYL +P+Q  S +ILK+M 
Sbjct: 221 ISLCQQLGNLGVWVRLHYVYPYPHVDELIPLMAAGKL---LPYLDIPLQHASPKILKAMK 277

Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           R        + I + R + P++ + S FIVGFPGET++DF+  +D + +    +   FK+
Sbjct: 278 RPGKIDHTLERIKQWREICPELTLRSTFIVGFPGETEEDFQILLDFLKEAQLDRVGCFKF 337

Query: 368 SPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-- 425
           SP  G P ++M +QV E VK ER     +  +E   +     +G+ + V++++  +E   
Sbjct: 338 SPVEGAPATDMPDQVPEEVKEERYHRFMQVQQEISSARLQQKIGKTLAVIVDEINEEGII 397

Query: 426 GKLVGRSPWLQSVVLNSKNH----NIGDIIKVRITDVKISTLYG 465
           G+ +  +P +  VV          NIGDII V IT+     L+G
Sbjct: 398 GRSMADAPEIDGVVYVENQSQSAVNIGDIISVTITEADEYDLWG 441


>gi|78778491|ref|YP_396603.1| hypothetical protein PMT9312_0106 [Prochlorococcus marinus str. MIT
           9312]
 gi|78711990|gb|ABB49167.1| SSU ribosomal protein S12P methylthiotransferase [Prochlorococcus
           marinus str. MIT 9312]
          Length = 471

 Score =  193 bits (491), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 136/454 (29%), Positives = 238/454 (52%), Gaps = 42/454 (9%)

Query: 33  GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92
           GC+ N+ D+  M+ +    GYE  ++++DA+++V+NTC   E A E+    + +I    N
Sbjct: 39  GCEKNLVDTQHMQGLLDKDGYEVESNINDANIVVVNTCSFIETAREES---IRKILEYTN 95

Query: 93  SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDT 152
               +G +  V+VAGC+AQ   EE+L+  P +  +VG   Y ++ ++L+R   G+ V + 
Sbjct: 96  ----QGKE--VIVAGCMAQHFKEELLKEIPEIKGLVGTGDYQKIAKVLDRVEKGEIVNEV 149

Query: 153 ----DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
               ++  +++  R   VD     K    A+L I EGC+  C FC++P  RG + SR++ 
Sbjct: 150 SKIPEFIADEEIPRF--VD-----KNKFVAYLRIAEGCNYNCAFCIIPKLRGPQRSRTIE 202

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK-GLVRLRYTT 267
            +V EA+ L   G+ EI L+ Q +    GK + G K + + LL  LS++    +R+ Y  
Sbjct: 203 SIVSEAKSLAKQGIKEIILISQ-ITTNYGKDIYG-KPSLAKLLNELSKVPIPWIRIHY-- 258

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
           ++P  ++D +I+A  D   ++PY  LP+Q     +LKSMNR   A     I+++IR   P
Sbjct: 259 AYPTGLTDEVIRAFKDSKNIVPYFDLPLQHSHPDVLKSMNRPWQASLNESILEKIREEIP 318

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
              + +  IVGFPGE  + F   ++ +D+  +     F +SP  GT   ++  +V   V 
Sbjct: 319 SAVLRTSLIVGFPGEKKEHFEHLLEFLDRHKFDHVGVFIFSPEEGTAAFDLPNKVSPEVA 378

Query: 388 AER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVL 440
           A R   ++ +Q+ + + +   N + VG  +++L+EK   +  +L+GRS    P +   V+
Sbjct: 379 AARKDNVISVQQNISKDK---NQSYVGSKMKILVEKIS-DNNELIGRSYNFAPEIDGNVI 434

Query: 441 NSKNHN------IGDIIKVRITDVKISTLYGELV 468
            S + N      IG  ++  I+      LYGE +
Sbjct: 435 LSISANNYLRNYIGKFVEANISFADEYDLYGETI 468


>gi|126643044|ref|YP_001086028.1| putative tRNA-i(6)A37 modification enzyme [Acinetobacter baumannii
           ATCC 17978]
 gi|126388928|gb|ABO13426.1| putative tRNA-i(6)A37 modification enzyme [Acinetobacter baumannii
           ATCC 17978]
          Length = 246

 Score =  193 bits (491), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 99/239 (41%), Positives = 155/239 (64%), Gaps = 2/239 (0%)

Query: 232 VNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL 291
           +N +RG+  +G  CTF +LL  ++EI G+ RLRYTTSHP + SD LI+ + DL  ++ +L
Sbjct: 1   MNGYRGETFEGGICTFPELLRLVAEIPGIGRLRYTTSHPLEFSDELIQCYEDLPQMVSHL 60

Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351
           HLPVQSGS+ +LK+M R HT   Y   I ++R +RPD+ +SSDFI+GFPGETD++F  T+
Sbjct: 61  HLPVQSGSNDVLKAMKRNHTIDVYIDKIAKLRKIRPDMHLSSDFIIGFPGETDENFAKTL 120

Query: 352 DLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVG 411
             +  + +  ++SF YS R GTP S++ +   E+VK ERL  +Q+ +++  +   DA +G
Sbjct: 121 QFIKDLDFDHSYSFVYSKRPGTPASDLPDTTPEHVKKERLAQVQQVIKQSSIEKTDAMLG 180

Query: 412 QIIEVLIEK-HGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVK-ISTLYGELV 468
           +I  VLIEK   ++   LVG +   + V        +G   ++ IT++K ++ +YGEL+
Sbjct: 181 KIERVLIEKVSDQDPNILVGTADNTRLVTFVGDASWVGRFAEIEITEIKTLNLVYGELL 239


>gi|55274301|gb|AAV49043.1| MiaB [Azospirillum lipoferum]
          Length = 422

 Score =  193 bits (491), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 133/435 (30%), Positives = 219/435 (50%), Gaps = 31/435 (7%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           ++GC++N Y+S  M +   S G +        D++++NTC +  +A  +    + ++R  
Sbjct: 16  TFGCRLNTYESEVMRNHVRSAGLD--------DVVIVNTCAVTSEAERQARQTIRKLR-- 65

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
                +E  D  +VV GC AQ + +      P V+ V+G Q   + PE        K +V
Sbjct: 66  -----RERPDARIVVTGCAAQIDPQRFAA-MPEVDQVLGNQEKLQ-PESWGLPPAEKVLV 118

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
           +   SV++    L  + G  +R R   AF+ +Q+GCD  CTFC++PY RG   S  +  +
Sbjct: 119 NDIMSVKETAGHL--IGGFEDRAR---AFVQVQQGCDHRCTFCIIPYGRGPSRSVPIGGI 173

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270
           V++ + L+  G  E+ L G ++ ++ G  L G       +   L+ +  L RLR ++   
Sbjct: 174 VEQVQALVKAGYNEVVLSGVDITSY-GPDLPGSPSLGQMVRRLLALVPELPRLRLSSIDC 232

Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330
            +M D L +   +   LMP+LHL +Q+G D +LK M RRH   +      R+RS+RPD+ 
Sbjct: 233 IEMDDDLWRLIENEPRLMPHLHLSLQAGDDMVLKRMKRRHGRADSIAFCKRVRSIRPDVV 292

Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER 390
             +DFI GFP ET++ F+ TM LV++ G      F YSPR GTP + M  QVD  V+ ER
Sbjct: 293 FGADFIAGFPTETEEMFQNTMRLVEECGLTWLHVFPYSPRPGTPAARM-PQVDGAVRKER 351

Query: 391 LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDI 450
              ++   +  +     + VG+   VL+EK        +GR+    ++ L  +    G +
Sbjct: 352 AARMRAVGKAAEARTLASLVGRTATVLVEKDD------LGRTEHFAAIRLG-RTFAPGSL 404

Query: 451 IKVRITDVKISTLYG 465
           +   IT ++   L G
Sbjct: 405 VPAAITGIESGVLTG 419


>gi|310779080|ref|YP_003967413.1| SSU ribosomal protein S12P methylthiotransferase [Ilyobacter
           polytropus DSM 2926]
 gi|309748403|gb|ADO83065.1| SSU ribosomal protein S12P methylthiotransferase [Ilyobacter
           polytropus DSM 2926]
          Length = 448

 Score =  193 bits (491), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 133/435 (30%), Positives = 225/435 (51%), Gaps = 23/435 (5%)

Query: 31  SYGCQMNVYDSLRMED-MFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRN 89
           S GC  N+ DS  +   M   +G+E    ++DAD+ ++NTC     A E+    +     
Sbjct: 7   SLGCSKNLVDSENLIGIMVNKKGFEITTDIEDADIALINTCGFIGDAKEESIQTI----- 61

Query: 90  LKNSRIKEGGDLL-VVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
           L+    K GG+L  ++VAGC+AQ   +EI+   P V+ V+G     ++ E+++    G++
Sbjct: 62  LEIGEYKRGGNLKKIIVAGCLAQRYAQEIINEMPEVDAVIGTGEIDKIEEVVDEVLAGRK 121

Query: 149 VVDTDYSVEDKFERLSIVDGG-YNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
           ++ ++       E L+  D          TA+L I EGC++ CT+C++P  RG   SR++
Sbjct: 122 IIKSE-----SLEFLANADTDRILTTHPHTAYLKIAEGCNRRCTYCIIPKLRGDLRSRNI 176

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYT 266
             +V+EA++L   GV EI LL Q    +   G+D  +K    D++ +LS+++G+  +R  
Sbjct: 177 EDIVEEAQRLAAGGVREINLLAQETTEY---GIDLYKKKALPDVMKALSKVEGIEWIRTY 233

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
              P  ++D LI+     + +  Y  +PVQ  SD +L++M R  T  + + ++ +IR   
Sbjct: 234 YMFPNSITDELIETMKKEEKVCNYFDVPVQHVSDSVLRNMGRAKTGQQIKDLLYKIRREI 293

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           PD  I +  IVGFPGET++DF    + V +  +     FKYS    T   +M EQ+DE V
Sbjct: 294 PDATIRTTVIVGFPGETEEDFIELKEFVKEFKFDYVGVFKYSREEDTVAHDMDEQIDEEV 353

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-----KGKLVGRSPWLQSVVL- 440
           K  R + L     E     N   +G+ +EV+I+    E     +G+  G++  +   +L 
Sbjct: 354 KHRRWMELTNLQSEIAEIKNREFIGKTVEVIIDTVSSESEYMLEGRTRGQALEIDGKILT 413

Query: 441 NSKNHNIGDIIKVRI 455
           N      G+I+KV+I
Sbjct: 414 NDGTAKQGEIVKVKI 428


>gi|20807824|ref|NP_622995.1| 2-methylthioadenine synthetase [Thermoanaerobacter tengcongensis
           MB4]
 gi|81481565|sp|Q8RA52|RIMO_THETN RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|20516384|gb|AAM24599.1| 2-methylthioadenine synthetase [Thermoanaerobacter tengcongensis
           MB4]
          Length = 436

 Score =  193 bits (491), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 128/446 (28%), Positives = 231/446 (51%), Gaps = 28/446 (6%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N  DS +M  +   +GY  VN    AD+I++NTC   E A ++   ++ ++  L
Sbjct: 8   SLGCPKNSVDSEKMLALLKEKGYNIVNDEKKADVIIINTCAFIEDAKKESIEYIIQMGEL 67

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
           K  R+K      ++  GC+++   +E+++  P ++ V+G   + ++ +++E  + GK+V+
Sbjct: 68  KKKRLK-----YLIATGCLSERYNKELIKELPELDAVIGTGDFTQIVDVIEEVKKGKKVL 122

Query: 151 D---TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
                D   ++   R+      Y       A+L I EGC   C+FC++P  RG   SR +
Sbjct: 123 KYGHPDLLNDEGIPRILTTPPYY-------AYLKIAEGCSNACSFCIIPKLRGKYKSRKM 175

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYT 266
             +++EA++L   GV E+ ++ Q+   +   G+D  +K     LL  LS+I+ L  +R  
Sbjct: 176 ENIIEEAQELARKGVKELIIIAQDTTKY---GIDLYKKLMLPQLLRELSKIEELKWIRLL 232

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
            ++P  ++D LI+   +   ++ Y+ +P+Q  S+ +LK MNR  T  +  ++I ++RS+ 
Sbjct: 233 YAYPDSVTDELIEEIKNNQKIVKYIDIPLQHSSESVLKRMNRGTTRRKIEEVISKLRSI- 291

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           P + + + F+VGFPGET+++F    + + +  + +   F YS   GT    M  Q+ + V
Sbjct: 292 PGMVMRTTFMVGFPGETEEEFEDLKNFIKEKRFERVGVFTYSREEGTKSYYMKPQIRKKV 351

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVLNS 442
           K +R   L +  ++    FN + +G  +EVLIE  G E G   GRS    P +  +V   
Sbjct: 352 KLKRQEELMEIQKQISYEFNMSKIGTKLEVLIE--GFEDGVYYGRSYMDAPEIDGLVYVR 409

Query: 443 KNHNI--GDIIKVRITDVKISTLYGE 466
            +  +  GD + V + D     L GE
Sbjct: 410 SDKKLFPGDFVTVTVVDAFEYDLVGE 435


>gi|170287904|ref|YP_001738142.1| MiaB-like tRNA modifying enzyme [Thermotoga sp. RQ2]
 gi|170175407|gb|ACB08459.1| MiaB-like tRNA modifying enzyme [Thermotoga sp. RQ2]
          Length = 434

 Score =  193 bits (491), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 120/392 (30%), Positives = 220/392 (56%), Gaps = 21/392 (5%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           ++++GC++N Y+S  M +     GY  V    DA   ++N+C + ++  +KV   +  IR
Sbjct: 6   IETFGCKVNQYESEYMAEQLEKAGYV-VLPGGDASYYIVNSCAVTKEVEKKVKRLIKSIR 64

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
           N +N   K      +++ GC AQ   +E   R+  V++++G      + + +     GK+
Sbjct: 65  N-RNRNAK------IILTGCFAQLSPDEA--RNLPVDMILGIDEKKNIVDHINSLN-GKQ 114

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSL 207
            V         +E+   V G +  +    +++ +++GCD  CT+C +   RG  I S+ L
Sbjct: 115 QVVVSEPGRPVYEK---VKGSFEDR--TRSYIKVEDGCDNTCTYCAIRLARGTRIRSKPL 169

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
               +E  +++  G  EI + G N+  + GK +     + ++LL  + EI G  R+R ++
Sbjct: 170 EIFKEEFAEMVMKGYKEIVITGVNLGKY-GKDMGS---SLAELLRIVEEIPGDYRVRLSS 225

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
            +  D++D +++A      L P+LH+ VQSGSD +LK M R++   ++ +++D++RS+ P
Sbjct: 226 INVEDVNDEIVEAFKRNPRLCPHLHISVQSGSDDVLKRMGRKYKISDFMRVVDKLRSIDP 285

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
           D +I++D IVGFPGETD DF+ T++LV+K+ +++   F++SPR GTP S M   V E+ K
Sbjct: 286 DFSITTDIIVGFPGETDADFQRTLELVEKVEFSRVHIFRFSPRPGTPASRMEGGVPESKK 345

Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419
            ERL  L++K ++  + +    +G+  +VL E
Sbjct: 346 KERLDVLKEKAKDVSIRYRKRIIGKERKVLAE 377


>gi|70606747|ref|YP_255617.1| hypothetical protein Saci_0962 [Sulfolobus acidocaldarius DSM 639]
 gi|68567395|gb|AAY80324.1| universally conserved protein [Sulfolobus acidocaldarius DSM 639]
          Length = 421

 Score =  193 bits (491), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 142/448 (31%), Positives = 235/448 (52%), Gaps = 34/448 (7%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R ++++YGC +N  DS  M  +   +G+E V+++ DA+++V+NTC +R +  E++     
Sbjct: 2   RVYIETYGCALNKGDSYIMMTLLRDKGHEIVDNIQDAEILVINTCAVRLETEERMKQ--- 58

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           RI+ LK        D  +VVAGC+A AE   ++  +P  +V+ GPQ+  ++ +++E ++ 
Sbjct: 59  RIKELKKY-----NDKRLVVAGCLASAEPAVVVSLAPEASVI-GPQSVQKIVDVVENSK- 111

Query: 146 GKRVVDTDYSVEDK-FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            +R V   Y  EDK      + DG         A L I +GC   C FC+    R    S
Sbjct: 112 -QRQV---YLNEDKPLITPKVFDGK-------IAILPIADGCAGDCNFCITKLARRKLRS 160

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
                +V+  R  +  G  EI L GQ+  A+   GLD  +   SDL+  ++E++G   +R
Sbjct: 161 YPPHLIVESVRDAVRKGAVEIELSGQDTAAY---GLDLGQIKLSDLVRKVTEVEGDFMIR 217

Query: 265 YTTSHP----RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
                P    RD+ D +I+   +  V   ++HLPVQSG D +LK MNR++T  EY+ ++ 
Sbjct: 218 IGMMTPEQAMRDI-DGIIEVLRETKVY-KFIHLPVQSGDDNVLKLMNRKYTVDEYKDLVK 275

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
            IR   P + I++D I+G PGE ++ FR T++L+  I + +     YS R  T  ++M +
Sbjct: 276 EIRKKVPIVNITTDIIIGHPGEDENAFRNTLELMRDIKFERIHLAMYSIRPNTRSASM-K 334

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440
           QV + VK ER+    K   E     +   +  I  V+  ++G+ KG ++GR+     VV+
Sbjct: 335 QVPDPVKKERIQIANKLYEELAYEIHSDYLNSIASVITTEYGR-KGSVIGRTLNYIPVVI 393

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
             +N  +G  I VRI +     L GE +
Sbjct: 394 R-QNVELGKRINVRINEASFYDLRGEPI 420


>gi|150020569|ref|YP_001305923.1| MiaB-like tRNA modifying enzyme [Thermosipho melanesiensis BI429]
 gi|149793090|gb|ABR30538.1| MiaB-like tRNA modifying enzyme [Thermosipho melanesiensis BI429]
          Length = 429

 Score =  193 bits (491), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 123/395 (31%), Positives = 215/395 (54%), Gaps = 20/395 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R  + +YGC++N Y+S  M +   ++GY  VN   ++D+ V+N+C +  +A  KV     
Sbjct: 2   RVSIITYGCKLNQYESELMTERLENEGYVVVNGEVESDIYVINSCVVTNEATRKVKQ--- 58

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           +IR LK    K   D  +VV GC +Q    E+L     V++++G +   R+  ++E    
Sbjct: 59  QIRRLK----KRFPDSKIVVTGCYSQLFARELLEEE--VDLILGNKEKKRIESIIENVGV 112

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-S 204
               VD  Y   D  +   +      R R   AF+ +Q+GC   C++C + Y RG+ I S
Sbjct: 113 ---FVDRTYWNSDDLDEEYVFSSLSERTR---AFIKVQDGCTNVCSYCTIRYARGMRIRS 166

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           + +  VV E  ++++    EI + G N+  +   G D E  +  +LL ++ +IKG  R+R
Sbjct: 167 KPIELVVSEILRMVNKDYKEIVITGLNLGKY---GKDKE-TSLLNLLKNVVKIKGDFRIR 222

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
            ++ +P D++D LIK   + + +  +LH+P+QSGS +IL+ M R +T  ++  +  ++R 
Sbjct: 223 LSSINPEDINDELIKFIVNEEKVCNHLHVPLQSGSTKILEKMRRNYTQSDFLNLAYKLRK 282

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
              + +I++D +VGFPGET +DF  T+ +V ++ +++  +F+YS R  T    M  +V  
Sbjct: 283 EDINFSITTDIMVGFPGETQEDFEETLKVVKEVMFSKVHTFRYSDRPNTLAYKMENKVPG 342

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419
           NVK ER + L K  +E    +    VG+  +V+IE
Sbjct: 343 NVKKERAIELDKFSKEVAKEYRKRLVGKSTKVIIE 377


>gi|293391674|ref|ZP_06636008.1| MiaB family RNA modification enzyme [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290952208|gb|EFE02327.1| MiaB family RNA modification enzyme [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 443

 Score =  193 bits (490), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 145/466 (31%), Positives = 224/466 (48%), Gaps = 51/466 (10%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
            P   FV S GC  N+ DS R+     S GY  + S ++ADL+++NTC   + A ++   
Sbjct: 4   TPNIGFV-SLGCPKNLVDSERILTELRSNGYNIIPSYENADLVIVNTCGFIDSAVQESLE 62

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +G         ++E G   V+V GC+   E ++I +  P V  + GP +Y  +      
Sbjct: 63  TIGE-------ALEENGK--VIVTGCLGAKE-DQIRQVHPKVLEISGPHSYETV-----M 107

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            +  K V    YS    +E L +   G        A+L I EGCD  C FC++P  RG  
Sbjct: 108 NQVHKYVPKPQYS---PYESL-VPAQGVKLTPKHYAYLKISEGCDHRCAFCIIPSMRGDL 163

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNA---------------WRGKGLDGEKCTF 247
            SR ++QV+DEA++L+D GV E+ ++ Q+ +A               W G  +   K   
Sbjct: 164 DSRPITQVLDEAKRLVDAGVKELLIVSQDTSAYALDQSKENQNKTVFWNGMPI---KNNL 220

Query: 248 SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307
             L   L  +   VRL Y   +P       + A G L   +PYL +P+Q  S +ILK+M 
Sbjct: 221 ISLCRQLGNLSVWVRLHYVYPYPHVDDLIPLMAEGKL---LPYLDIPLQHASPKILKTMK 277

Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           R        + I + R + P++ + S FIVGFPGET++DF+  +D +      +   FK+
Sbjct: 278 RPGKIDRTLERIQQWREICPELTLRSTFIVGFPGETEEDFQMLLDFLKAAQLDRVGCFKF 337

Query: 368 SPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK 427
           SP  G P ++M +QV E VK ER     +  +E   +     +G+ + V++++    KG 
Sbjct: 338 SPVEGAPATDMPDQVPEEVKEERFHRFMQVQQEISAARLQQKIGKTLSVIVDEVNM-KG- 395

Query: 428 LVGRS----PWLQSVVLNSKNH----NIGDIIKVRITDVKISTLYG 465
           ++GRS    P +  VV          NIGD+I V ITD     L+G
Sbjct: 396 VIGRSMVDAPEIDGVVYVENQSQSAVNIGDVISVTITDADEYDLWG 441


>gi|163814151|ref|ZP_02205543.1| hypothetical protein COPEUT_00305 [Coprococcus eutactus ATCC 27759]
 gi|158450600|gb|EDP27595.1| hypothetical protein COPEUT_00305 [Coprococcus eutactus ATCC 27759]
          Length = 437

 Score =  193 bits (490), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 130/453 (28%), Positives = 231/453 (50%), Gaps = 28/453 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC-HIREKAAEKVYSFL 84
           +  + S GC  N+ DS  M  +    G+E  N   +A+ +V+NTC  I +   E + + +
Sbjct: 2   KVLLISLGCDKNLVDSEVMLGLLNKAGHELTNDETEAEAVVINTCAFISDAKEESINTII 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
              R  K  R+K+     ++VAGC++Q   +EI++  P ++V++G   Y ++ E +    
Sbjct: 62  EMGRLKKTGRLKK-----LIVAGCLSQRYKDEIMKELPEIDVIIGATNYDKIVEAIGTDE 116

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
               V D +Y+ +   ER+   +          A+  I EGC+K CT+C++P+ RG   S
Sbjct: 117 -DAIVDDINYTPKPVSERIVTTNAS-------MAYFKIAEGCNKLCTYCIIPHIRGRYRS 168

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
             + +++  A KL  +G+ E+ L+ Q    + G  L G K    +LL  LS+I+G+  +R
Sbjct: 169 IPMDRLLASAEKLAADGIKELVLVAQETTLY-GVDLYGGK-KLPELLTKLSDIEGIEWIR 226

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
               +P +++D LI    +   +  Y+ +P+Q   + IL+ M R+ +  +   ++ ++R+
Sbjct: 227 LLYCYPEEITDELISVMAENPKICHYIDIPIQHSENEILRRMGRKTSREDIVSLVSKLRT 286

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             PDIAI +  I GFPGET +     +D VD+  + +   F YSP  GTP +   +QVD 
Sbjct: 287 AMPDIAIRTTLISGFPGETQELHDGLVDFVDECEFDRLGVFTYSPEEGTPAAGYEDQVDG 346

Query: 385 NVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQS 437
            + A   + ++ LQ+++  ++   N   +G I  VLIE +  E    VGR+    P +  
Sbjct: 347 ELAAKWRDEIMELQQEISYEK---NQELIGSIQRVLIEGYLVEDDVYVGRTYRDAPGVDG 403

Query: 438 VVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468
           +V  S  + +  G  + V+IT+     L G +V
Sbjct: 404 IVFVSAPYELMSGSFVDVKITEANEYDLTGVIV 436


>gi|256425530|ref|YP_003126183.1| MiaB-like tRNA modifying enzyme [Chitinophaga pinensis DSM 2588]
 gi|256040438|gb|ACU63982.1| MiaB-like tRNA modifying enzyme [Chitinophaga pinensis DSM 2588]
          Length = 425

 Score =  193 bits (490), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 121/397 (30%), Positives = 205/397 (51%), Gaps = 16/397 (4%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N  ++  +  +    G+ + +  + AD+ V+NTC + E A ++    + RI+  
Sbjct: 11  TLGCKLNFSETSSLSRLLEQDGFVKTDFEEQADVYVINTCSVTENADKECRHLVRRIQ-- 68

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
                +   + ++V+ GC AQ + +EI      V++V+G    + + + L+    G    
Sbjct: 69  -----RRAPESMIVITGCYAQLKPKEIAEIEG-VDLVLGAAEKFNIVDHLKTLTKGDSAK 122

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
                +ED    ++     Y+       FL +Q+GCD  C+FC +P  RG   S S+++V
Sbjct: 123 ICSCDIED----VNTFHASYSVNDRTRTFLKVQDGCDYTCSFCTIPMARGKSRSDSVARV 178

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC---TFSDLLYSLSEIKGLVRLRYTT 267
           V+ A  L  +GV EI L G N+  + GKGL+G K    TF +L+  L +++G+ R R ++
Sbjct: 179 VEHAHSLAASGVKEIVLTGINLGDF-GKGLEGGKKREETFFELIQELDKVEGIERYRISS 237

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
             P  +S+ +I+   +    MP+ H+P+QSGS+ IL  M RR+    Y   +  I+   P
Sbjct: 238 IEPNLLSNEIIEFVANSKRFMPHFHIPLQSGSNDILGLMRRRYRRELYADKVALIKQFMP 297

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
             AI  D IVGFP E+D  F+ T D +  +  +    F YS R  T   ++   V  N++
Sbjct: 298 HCAIGVDVIVGFPSESDAHFQETYDFLHGLDISYLHVFTYSERANTSALDITPVVPVNIR 357

Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE 424
            ER   L+    ++Q  FN+  VG+  +VL EKHGK+
Sbjct: 358 NERNKMLRNLSHKKQQYFNEQHVGETRKVLFEKHGKD 394


>gi|238066629|sp|Q31D78|RIMO_PROM9 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
          Length = 454

 Score =  193 bits (490), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 136/454 (29%), Positives = 238/454 (52%), Gaps = 42/454 (9%)

Query: 33  GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92
           GC+ N+ D+  M+ +    GYE  ++++DA+++V+NTC   E A E+    + +I    N
Sbjct: 22  GCEKNLVDTQHMQGLLDKDGYEVESNINDANIVVVNTCSFIETAREES---IRKILEYTN 78

Query: 93  SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDT 152
               +G +  V+VAGC+AQ   EE+L+  P +  +VG   Y ++ ++L+R   G+ V + 
Sbjct: 79  ----QGKE--VIVAGCMAQHFKEELLKEIPEIKGLVGTGDYQKIAKVLDRVEKGEIVNEV 132

Query: 153 ----DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
               ++  +++  R   VD     K    A+L I EGC+  C FC++P  RG + SR++ 
Sbjct: 133 SKIPEFIADEEIPRF--VD-----KNKFVAYLRIAEGCNYNCAFCIIPKLRGPQRSRTIE 185

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK-GLVRLRYTT 267
            +V EA+ L   G+ EI L+ Q +    GK + G K + + LL  LS++    +R+ Y  
Sbjct: 186 SIVSEAKSLAKQGIKEIILISQ-ITTNYGKDIYG-KPSLAKLLNELSKVPIPWIRIHY-- 241

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
           ++P  ++D +I+A  D   ++PY  LP+Q     +LKSMNR   A     I+++IR   P
Sbjct: 242 AYPTGLTDEVIRAFKDSKNIVPYFDLPLQHSHPDVLKSMNRPWQASLNESILEKIREEIP 301

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
              + +  IVGFPGE  + F   ++ +D+  +     F +SP  GT   ++  +V   V 
Sbjct: 302 SAVLRTSLIVGFPGEKKEHFEHLLEFLDRHKFDHVGVFIFSPEEGTAAFDLPNKVSPEVA 361

Query: 388 AER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVL 440
           A R   ++ +Q+ + + +   N + VG  +++L+EK   +  +L+GRS    P +   V+
Sbjct: 362 AARKDNVISVQQNISKDK---NQSYVGSKMKILVEKIS-DNNELIGRSYNFAPEIDGNVI 417

Query: 441 NSKNHN------IGDIIKVRITDVKISTLYGELV 468
            S + N      IG  ++  I+      LYGE +
Sbjct: 418 LSISANNYLRNYIGKFVEANISFADEYDLYGETI 451


>gi|254422541|ref|ZP_05036259.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Synechococcus sp.
           PCC 7335]
 gi|196190030|gb|EDX84994.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Synechococcus sp.
           PCC 7335]
          Length = 445

 Score =  193 bits (490), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 127/410 (30%), Positives = 210/410 (51%), Gaps = 27/410 (6%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           +   GC+ N  DS  M  +    GY    + + AD +++NTC   + A E+    L  + 
Sbjct: 9   ISHLGCEKNRVDSEHMLGLLAKAGYGIGANEEGADYVIVNTCSFIQAAREESVRTLVELA 68

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
                      D  +V+ GC+AQ    E+L   P    +VG   Y+++ +++E+A  GKR
Sbjct: 69  E---------ADKKIVITGCLAQHFQGELLDEIPEAVALVGTGDYHKIVDVIEQAEAGKR 119

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVT---AFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           V           E + I D    R R  +   A++ I EGCD  C FC++P+ RG + SR
Sbjct: 120 VKVVSA------EPIYIADETVPRYRTTSEGVAYVRIAEGCDYKCAFCIIPHLRGKQRSR 173

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK-GLVRLR 264
           S+  +V EA +L D GV E+ L+ Q    + G  L G K   ++L+ +L E+    VR+ 
Sbjct: 174 SIESIVAEAHQLADQGVKELILISQITTNY-GVDLYG-KPKLAELIRALGEVDVPWVRMH 231

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           Y  ++P  ++  +IKA  +    +PYL LP+Q    +IL++MNR        +IID +++
Sbjct: 232 Y--AYPTGLTPAVIKAIQETPNFLPYLDLPLQHSHPQILRAMNRPWQGQVNDEIIDGLKA 289

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             P+  + + FIVGFPGET++ F      V++  +     F +S   G    ++  Q+++
Sbjct: 290 SLPEAVLRTTFIVGFPGETEEQFNHLKSFVERHEFDHVGVFTFSAEEGAVAYDLPNQIEQ 349

Query: 385 NVKAERLLCLQKKLREQQVSF--NDACVGQIIEVLIEKHGKEKGKLVGRS 432
           +V  ER   +   L +Q++SF  N A +G  ++VLIE+     G+L+GRS
Sbjct: 350 SVMDERREAIM--LTQQEISFRRNQAQIGTTVKVLIEQENPSTGELIGRS 397


>gi|229825006|ref|ZP_04451075.1| hypothetical protein GCWU000182_00355 [Abiotrophia defectiva ATCC
           49176]
 gi|229790753|gb|EEP26867.1| hypothetical protein GCWU000182_00355 [Abiotrophia defectiva ATCC
           49176]
          Length = 449

 Score =  193 bits (490), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 125/418 (29%), Positives = 220/418 (52%), Gaps = 22/418 (5%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  +++MF + GYE     + AD+ ++NTC +   A  K    L R + L
Sbjct: 5   TLGCKVNAYETESIKEMFKNNGYEIKQFNEVADIYIVNTCTVTNIADRKSRQMLHRAKKL 64

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE------RAR 144
                    + +VV  GC  QA  +  L    +V+++VG +    +  L+E      + R
Sbjct: 65  -------NPEAVVVAVGCYVQAP-QSKLEDDDLVDILVGTRGKSSVLSLVEEYIRSNKTR 116

Query: 145 -FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            F   V+ +    +D       V+ G  + R   A + IQ+GCD+FCT+C++P+ RG   
Sbjct: 117 DFKHNVIKSGEENKDWAYDSGEVNAGGGKNR---ANIKIQDGCDQFCTYCIIPFVRGRIR 173

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR +  +V+E  +L+  G  E+ L G ++ ++ G+ +DGE     +LL  L++++G  R+
Sbjct: 174 SRDMEGIVEETDRLVKAGFREMVLTGIHIGSY-GRDIDGESRML-ELLTELNKVEGDFRI 231

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R  +  PR +++  ++    L  + P+ HL +QSGS  +LK MNR + A EY   +  ++
Sbjct: 232 RLGSVEPRLITEEFLEGLVKLKKVCPHFHLSLQSGSTTVLKRMNRHYGAEEYLNSVKLLK 291

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
                  I++D IVGFPGETD++F  T+  V ++G+ +   F YS R GT  + M EQ+ 
Sbjct: 292 KYYDRPGITTDIIVGFPGETDEEFEETVAFVKEVGFLKVHVFPYSKRDGTYAAKMNEQIA 351

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKH--GKEKGKLVGRSPWLQSVV 439
             +K ER   L K   E    + ++  G + +VL+E+   G+E   +   + +++  V
Sbjct: 352 PEIKKERENILIKVCEEVSEKYLESFNGDMEQVLLEEEIKGREDYVMAHSARYIEVAV 409


>gi|323692752|ref|ZP_08106980.1| hypothetical protein HMPREF9475_01843 [Clostridium symbiosum
           WAL-14673]
 gi|323503194|gb|EGB19028.1| hypothetical protein HMPREF9475_01843 [Clostridium symbiosum
           WAL-14673]
          Length = 436

 Score =  193 bits (490), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 124/393 (31%), Positives = 212/393 (53%), Gaps = 20/393 (5%)

Query: 33  GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92
           GC++N Y++  M+ +    GYE V   D AD+ ++NTC +   A +K    L R + +  
Sbjct: 10  GCKVNAYETEAMQQLLEDAGYEIVPFKDGADVYIINTCSVTNVADKKSRQMLHRAKKM-- 67

Query: 93  SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER--ARFGKRVV 150
                  D +VV  GC  QA  E+ L +   V++++G      L  LLER  A    R  
Sbjct: 68  -----NPDSVVVAVGCYVQAAKED-LEKDMAVDLIIGNNKKKDLVGLLERYFADRDDREE 121

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
             D +   ++E L I     + +    AF+ +Q+GC++FC++C++PYTRG   SR++  V
Sbjct: 122 VIDIAATGEYEELHIRKIADHTR----AFIKVQDGCNQFCSYCIIPYTRGRVRSRAIGDV 177

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270
           V E   L   G  EI L G +++++     + ++     L+  L +I+G+ R+R  +  P
Sbjct: 178 VKEVEGLAAAGYKEIVLTGIHLSSYGVDFSEEKRENLLSLITCLDKIQGIERIRLGSLEP 237

Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330
           R +++  + A   L  + P+ HL +QSG +  L  MNR +TA EY +    +R    + A
Sbjct: 238 RIITEEFVSALAGLKSICPHFHLSLQSGCNATLARMNRHYTAQEYLERCVILRKHFDNPA 297

Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV---DENVK 387
           I++D IVGFPGET ++F  T   ++ + + +   FKYS R GT  + M  QV   D++V+
Sbjct: 298 ITTDVIVGFPGETVEEFDETKRFLETVRFYEMHIFKYSKREGTRAAVMENQVPEQDKSVR 357

Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
           ++ LL L+ K+ ++   + ++ +G+  EVL+E+
Sbjct: 358 SDILLTLEHKMSDE---YRESFLGKETEVLLEE 387


>gi|323483779|ref|ZP_08089159.1| hypothetical protein HMPREF9474_00908 [Clostridium symbiosum
           WAL-14163]
 gi|323402970|gb|EGA95288.1| hypothetical protein HMPREF9474_00908 [Clostridium symbiosum
           WAL-14163]
          Length = 436

 Score =  193 bits (490), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 124/393 (31%), Positives = 212/393 (53%), Gaps = 20/393 (5%)

Query: 33  GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92
           GC++N Y++  M+ +    GYE V   D AD+ ++NTC +   A +K    L R + +  
Sbjct: 10  GCKVNAYETEAMQQLLEDAGYEIVPFKDGADVYIINTCSVTNVADKKSRQMLHRAKKM-- 67

Query: 93  SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER--ARFGKRVV 150
                  D +VV  GC  QA  E+ L +   V++++G      L  LLER  A    R  
Sbjct: 68  -----NPDSVVVAVGCYVQAAKED-LEKDMAVDLIIGNNKKKDLVGLLERYFADRDDREE 121

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
             D +   ++E L I     + +    AF+ +Q+GC++FC++C++PYTRG   SR++  V
Sbjct: 122 VIDIAATGEYEELHIRKIADHTR----AFIKVQDGCNQFCSYCIIPYTRGRVRSRAIGDV 177

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270
           V E   L   G  EI L G +++++     + ++     L+  L +I+G+ R+R  +  P
Sbjct: 178 VKEVEGLAAAGYKEIVLTGIHLSSYGVDFPEEKRENLLSLITCLDKIQGIERIRLGSLEP 237

Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330
           R +++  + A   L  + P+ HL +QSG +  L  MNR +TA EY +    +R    + A
Sbjct: 238 RIITEEFVSALAGLKSICPHFHLSLQSGCNATLARMNRHYTAQEYLERCVILRKHFDNPA 297

Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV---DENVK 387
           I++D IVGFPGET ++F  T   ++ + + +   FKYS R GT  + M  QV   D++V+
Sbjct: 298 ITTDVIVGFPGETVEEFDETKRFLETVRFYEMHIFKYSKREGTRAAVMENQVPEQDKSVR 357

Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
           ++ LL L+ K+ ++   + ++ +G+  EVL+E+
Sbjct: 358 SDILLTLEHKMSDE---YRESFLGKETEVLLEE 387


>gi|325285087|ref|YP_004260877.1| MiaB-like tRNA modifying enzyme [Cellulophaga lytica DSM 7489]
 gi|324320541|gb|ADY28006.1| MiaB-like tRNA modifying enzyme [Cellulophaga lytica DSM 7489]
          Length = 442

 Score =  192 bits (489), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 131/427 (30%), Positives = 213/427 (49%), Gaps = 39/427 (9%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N  ++  +   F  +G++RV+  + AD+ V+NTC + E A ++  S + + +  
Sbjct: 9   TLGCKLNFSETSTIARSFVDEGFDRVDFAEAADMYVINTCSVTENADKRFKSIVKQAQ-- 66

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL---LERARFGK 147
                K+  D  V   GC AQ + EE L     V++V+G    +++ +    L +  FG+
Sbjct: 67  -----KKNPDAFVAAVGCYAQLKPEE-LAAVDGVDLVLGATEKFKITDYINDLSKNDFGE 120

Query: 148 ----RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
                + D D+ V           G Y       AFL +Q+GCD  CT+C +P  RGI  
Sbjct: 121 VHSCEIEDADFYV-----------GSYAIGDRTRAFLKVQDGCDYKCTYCTIPLARGISR 169

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK---CTFSDLLYSLSEIKGL 260
           S +L  V+  A ++    + EI L G N+  + GKG  G K    TF DL+ +L  + G+
Sbjct: 170 SDTLENVLKNATEISAKNIKEIVLTGVNIGDY-GKGEFGNKKHQHTFLDLVKALDTVDGI 228

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            RLR ++  P  + +  I      +  +P+ H+P+QSGSD ILK M RR+    Y   + 
Sbjct: 229 HRLRISSIEPNLLKNETIDFVSKSNSFVPHFHIPLQSGSDTILKLMRRRYLTNLYIDRVA 288

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           +I+ V P   I  D IVGFPGETD+ F  T   ++++  +    F YS R  T  + M  
Sbjct: 289 KIKEVMPHACIGVDVIVGFPGETDEHFLETYHFLNELNISYLHVFTYSERDNTVAAEMDN 348

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG--------RS 432
            V +NV+A+R   L+    +++ +F ++ +G    VL E   KE G + G        ++
Sbjct: 349 VVPKNVRAKRSKMLRGLSVKKRRAFYESQLGSTRTVLFESENKE-GYINGFTENYVKVKA 407

Query: 433 PWLQSVV 439
           PW   +V
Sbjct: 408 PWNPELV 414


>gi|307244373|ref|ZP_07526486.1| ribosomal protein S12 methylthiotransferase RimO
           [Peptostreptococcus stomatis DSM 17678]
 gi|306492274|gb|EFM64314.1| ribosomal protein S12 methylthiotransferase RimO
           [Peptostreptococcus stomatis DSM 17678]
          Length = 440

 Score =  192 bits (489), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 123/402 (30%), Positives = 210/402 (52%), Gaps = 23/402 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +  ++S GC  N+ D+  M  +    G++ V   +DAD++++NTC   E A ++    + 
Sbjct: 2   KIALESLGCSKNLVDAEIMLGLLNKNGHQLVGDYNDADIVIVNTCGFIESAKQESIDSIV 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE--RA 143
           +  NLKN    EG    ++V+GC+AQ   +E++   P ++ +VG  +Y  + ++++    
Sbjct: 62  QYANLKN----EGSLSYLLVSGCLAQRYPDELVEEIPEIDAIVGTGSYQNITDVVDGLTE 117

Query: 144 RFGKRVV-DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           R G R++ D +++  +   R       Y       A+L I EGCD  CT+C++P  RG  
Sbjct: 118 RDGIRLIEDINFTFNEDLPR-------YVSTPDHLAYLKIGEGCDNHCTYCIIPKLRGKY 170

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR L  +++EA+KL + GV E+ ++ Q+ + + G+ + G+      L          +R
Sbjct: 171 RSRKLENLLEEAKKLKEAGVKELVVIAQDTSVY-GRDIYGKPDLAGLLEGLALLGFDWIR 229

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
             Y  S+P  +S  ++      D +  Y  +P+Q  SDRILK MNR+ +  E +  +D I
Sbjct: 230 FMY--SYPEGISQEIVDVVAKYDNICSYFDIPMQHASDRILKLMNRKTSRQELKDKVDMI 287

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           RS  PD  I + FIVGFPGETD+DF   +D V ++   +  +F YS    TP   +   +
Sbjct: 288 RSRVPDATIRTTFIVGFPGETDEDFEDLIDFVKEMKLDRMGAFTYSREEDTPADRLDGHL 347

Query: 383 DENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKH 421
            + VK E   RL+ +Q+ + E+    N   +G+  +VLIE  
Sbjct: 348 SQGVKEERLQRLMMVQQAISEE---LNRKKIGKTYKVLIEDQ 386


>gi|89894712|ref|YP_518199.1| hypothetical protein DSY1966 [Desulfitobacterium hafniense Y51]
 gi|123279971|sp|Q24W37|RIMO_DESHY RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|89334160|dbj|BAE83755.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 445

 Score =  192 bits (489), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 139/458 (30%), Positives = 232/458 (50%), Gaps = 33/458 (7%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++  V + GC  N  DS  M     ++ Y+ VN  + AD+I++NTC   E A  +    +
Sbjct: 6   KKVAVVTLGCPKNQVDSEIMTGHMMTK-YQIVNEPEQADIIIINTCTFIESAKAESIDMI 64

Query: 85  GRIRNLKNSRIKEGGDLLVVVA-GCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
                L+ S+ KE G    +VA GC+AQ  G+E+L   P ++ ++G      + E LE A
Sbjct: 65  -----LQMSQYKEEGQCQTLVATGCLAQRYGDELLAEIPELDGIMGTGNVAEILETLEEA 119

Query: 144 RFGK-RVVDTD---YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
              K R +  +   +  ++   R+ +    Y       A++ + EGCD +CT+C++P+ R
Sbjct: 120 EKSKVRRISAEAPAFIYDETMPRVRLSPKQY-------AYVKVAEGCDNYCTYCIIPHVR 172

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G   SR+   ++ E   +   GV E+ L+ Q+   + GK   GE      L+  ++ I+G
Sbjct: 173 GHFRSRTQESILREVEAMASEGVKEVLLIAQDTTRY-GKDRYGEY-RLPSLIKEIARIEG 230

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           +  +R    +P   +D LI    +   +  YL LP+Q   D++L  MNRR T  E   +I
Sbjct: 231 IEWIRLMYCYPELFTDELITVMKETPKVCRYLDLPLQHAHDKVLAEMNRRGTIREAEGLI 290

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            ++R   PDI + +  I GFPGET+++F+A ++   KI + +  +F YS    TP +   
Sbjct: 291 HKLRQEIPDIRLRTTMITGFPGETEEEFQAVVEFAKKIRFDRLGAFAYSQEESTPAAQRE 350

Query: 380 EQVDENVKAER---LLCLQKKLR-EQQVSFNDACVGQIIEVLIEKHGKEK---GKLVGRS 432
           +QV E ++ +R   L+ LQ  +  EQQ  +    VGQ ++VLIE+   ++   G+  G +
Sbjct: 351 DQVPEEIRQQRRDQLMELQHDIAYEQQQRW----VGQTLKVLIEEALPDQRWVGRSEGDA 406

Query: 433 PWLQSVVL--NSKNHNIGDIIKVRITDVKISTLYGELV 468
           P +  VV   +     IGD + V+IT      L GE+V
Sbjct: 407 PEIDGVVYVDSPGELEIGDFVLVKITRADSYDLMGEVV 444


>gi|253583638|ref|ZP_04860836.1| 2-methylthioadenine synthetase [Fusobacterium varium ATCC 27725]
 gi|251834210|gb|EES62773.1| 2-methylthioadenine synthetase [Fusobacterium varium ATCC 27725]
          Length = 445

 Score =  192 bits (489), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 137/444 (30%), Positives = 230/444 (51%), Gaps = 31/444 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQ-GYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +F + S GC  N+ DS     +  ++ G+E  + + +AD+I++NTC     A ++    +
Sbjct: 2   KFALISLGCSKNLVDSENFIGILVNKRGFEVTSELGEADIIIVNTCGFIGDAKKESIETI 61

Query: 85  GRIRNLK-NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
             + +LK N  +K+     ++V GC+AQ    EIL+  P V+ V+G     ++ +++E  
Sbjct: 62  LEVSDLKINGNLKK-----IIVTGCLAQRYAGEILKELPEVDAVIGTGEIDKIEKVIEEV 116

Query: 144 RFGKRVVDT---DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
              KRVV++   D+  + + +R+             TA+L I EGCD+ CT+C++P  RG
Sbjct: 117 LADKRVVESTKMDFLADSETDRVLTTASH-------TAYLKIAEGCDRKCTYCIIPQLRG 169

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
              SR++  ++ EA KL+ +GV E+ LL Q    + G  L  EK + + L+  L +I GL
Sbjct: 170 NLRSRTIEDILKEANKLVASGVRELNLLAQETTEY-GIDLYKEK-SLARLMKELVKIDGL 227

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
             LR     P  ++D LI      + +  Y  +PVQ  SD IL+ M R  +    + I++
Sbjct: 228 KWLRTYYMFPDSLTDELIDVMKTEEKICKYFDIPVQHISDNILQQMGRAKSGNHIKGILN 287

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           RIR   PD  I +  IVGFPGET+++F      +++  +     FKYS    T   +M  
Sbjct: 288 RIRKEIPDAVIRTAVIVGFPGETEENFEELKAFIEEYKFDYVGVFKYSREEDTKAYDMEN 347

Query: 381 QVDENVKAERLL---CLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-----KGKLVGRS 432
           QV E +K +R +    LQ K+ E +   N   +G+I+EV+I+    E     +G+  G++
Sbjct: 348 QVPEEIKEKRWIEITNLQTKIAENK---NRNMLGKIVEVMIDGVSTESEYLLEGRTKGQA 404

Query: 433 PWLQSVVL-NSKNHNIGDIIKVRI 455
             +   VL N      G+I+KV++
Sbjct: 405 LEIDGKVLTNDGTAKPGEIVKVKL 428


>gi|126465996|ref|YP_001041105.1| RNA modification protein [Staphylothermus marinus F1]
 gi|126014819|gb|ABN70197.1| RNA modification enzyme, MiaB family [Staphylothermus marinus F1]
          Length = 429

 Score =  192 bits (489), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 136/449 (30%), Positives = 247/449 (55%), Gaps = 29/449 (6%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ ++++YGC +N  D   M+ +  S+G++ V  + +AD I++NTC +R     K+   +
Sbjct: 3   RKIYIETYGCALNRGDEYIMKTVLVSRGHKLVEEITEADTIIINTCTVRYDTELKM---I 59

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            RI+ L   RI    +  +++AGC+A+A+  +I + +P  ++V  PQ     P++     
Sbjct: 60  KRIKEL--YRIASEQNKKLIIAGCMAKAQPYKIHKIAPKTSLV-SPQN---APKIW---- 109

Query: 145 FGKRVVDTDYSV-EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
                V++D  V   K ER   + G Y  K+   A+L IQEGC   C+FC+V   R   +
Sbjct: 110 ---IAVESDGQVFLLKGERNRRILGTYVDKQ--IAYLPIQEGCLGNCSFCIVKNARRQLV 164

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           S  ++++ +  ++L+  GV EI + GQ+  ++ G  L G K    +LL  L  IKG   +
Sbjct: 165 SYPINKIKNTVKELVGKGVVEIEITGQDTASY-GLDLYG-KQMLPNLLEELDGIKGNFMI 222

Query: 264 RYTTSHPRDMS---DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
           R    +P  ++   D LI+   +   +  +LH+P+QSGSD++L+ M R++T  EYR+I+ 
Sbjct: 223 RIGMMNPDTLANILDELIEVIKNSAHIYRFLHIPLQSGSDKVLRIMRRKYTVDEYREIVK 282

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
            +R   P+I+I++D IVG PGE ++DF  T+D++ ++ + +     YS R  T  ++ L 
Sbjct: 283 ILRKKIPEISIATDIIVGHPGEEEEDFEQTLDIIKELKFERVHPAVYSIRPNTYSAS-LR 341

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440
           Q+  +VK ER+L L K +    +  +   +G++++  I +H       +GR+     V++
Sbjct: 342 QIPTSVKKERMLRLLKIIENVGLEVHRKYLGKVLDTFITEHS---NTWIGRTLNYIPVII 398

Query: 441 NSKNH-NIGDIIKVRITDVKISTLYGELV 468
            S+N  + G  +K++IT+     L G +V
Sbjct: 399 FSENTLDFGKHVKIQITNATFYDLRGVIV 427


>gi|319775410|ref|YP_004137898.1| 2-methylthioadenine synthetase [Haemophilus influenzae F3047]
 gi|329122563|ref|ZP_08251144.1| MiaB family RNA modification enzyme [Haemophilus aegyptius ATCC
           11116]
 gi|317450001|emb|CBY86214.1| 2-methylthioadenine synthetase [Haemophilus influenzae F3047]
 gi|327473114|gb|EGF18540.1| MiaB family RNA modification enzyme [Haemophilus aegyptius ATCC
           11116]
          Length = 445

 Score =  192 bits (489), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 150/475 (31%), Positives = 243/475 (51%), Gaps = 62/475 (13%)

Query: 20  QCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEK 79
           Q   P   FV S GC  N+ DS R+     + GY  V S ++ DL+++NTC   + A ++
Sbjct: 2   QNSTPSIGFV-SLGCPKNLVDSERILTELRTDGYNIVPSYENVDLVIVNTCGFIDSAVQE 60

Query: 80  VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL 139
               +G         ++E G   V+V GC+   E ++I    P V  V GP +Y  +  +
Sbjct: 61  SLESIGE-------ALEENGR--VIVTGCLGAKE-DQIREVHPKVLEVSGPHSYEAV--M 108

Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT------AFLTIQEGCDKFCTFC 193
            +  ++  +     Y        +S+V      K+GV       A+L I EGCD  CTFC
Sbjct: 109 AQVHKYVPKPTHNPY--------ISLVP-----KQGVKLTPKHYAYLKISEGCDHRCTFC 155

Query: 194 VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-----RGKGLDGEKCTF- 247
           ++P  RG   SRS++QV+DEA++L + GV E+ ++ Q+ +A+     R +G  G K  F 
Sbjct: 156 IIPSMRGDLESRSITQVLDEAKRLAEAGVKELLVVSQDTSAYSMDLKRQEG--GVKTAFW 213

Query: 248 ------SDLLYSLSEIKGL---VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
                 +DL+    ++  L   VRL Y   +P    D LI    D   L+PYL +P+Q  
Sbjct: 214 NGMPIKNDLMTLCKQLGKLGIWVRLHYVYPYPH--VDDLIPLMAD-GTLLPYLDIPLQHA 270

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           S +ILK+M R  +     + I + R + PD+ + S FIVGFPGET++DF+  +D + +  
Sbjct: 271 SPKILKAMKRPGSIDRTLERIKQWREICPDLTLRSTFIVGFPGETEEDFQLLLDFLKEAQ 330

Query: 359 YAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI 418
             +   FK+SP  G P ++M +QV E+VK ER     +  +E   +     +G+ ++VL+
Sbjct: 331 LDRVGCFKFSPVEGAPATDMADQVPEDVKEERFHRFMQLQQEISANRLKQKIGKTLDVLV 390

Query: 419 EKHGKEKGKLVGRS----PWLQSVV----LNSKNHNIGDIIKVRITDVKISTLYG 465
           ++   ++  ++GRS    P +  +V    L+  N  +GD+IKV IT+     L+G
Sbjct: 391 DE--IDEDGIIGRSKADAPEVDGLVYVDNLSRINVKVGDVIKVTITNSDEYDLWG 443


>gi|108760706|ref|YP_629733.1| putative tRNA modifying protein [Myxococcus xanthus DK 1622]
 gi|123248036|sp|Q1DC90|RIMO_MYXXD RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|108464586|gb|ABF89771.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Myxococcus xanthus
           DK 1622]
          Length = 476

 Score =  192 bits (488), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 136/460 (29%), Positives = 230/460 (50%), Gaps = 29/460 (6%)

Query: 20  QCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEK 79
           +   P+  ++ + GC  N  DS  M      +GY  V    DA +IV+NTC     A ++
Sbjct: 2   ETTTPKSLYMMTLGCPKNRVDSEVMLGTLRHRGYTLVQEASDAQVIVVNTCAFIGPAKQE 61

Query: 80  VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL 139
               +  +  LK S    G    +VV GC++Q  GEE+ +  P V+  +G   Y ++ +L
Sbjct: 62  SVDSILEMAELKKS----GACKTLVVTGCLSQRYGEELSKEMPEVDHFLGTSAYAQIGDL 117

Query: 140 LERARFGKRVV-DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
           L      ++V+ D DY  +    R+       N     TA+L I EGCD  C FC++P  
Sbjct: 118 LAAEASPRQVIPDPDYIHDANTPRI-------NSMPKYTAYLKISEGCDNACAFCIIPTL 170

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258
           RG + SR +  +V EA++L D+GV E+ L+ Q++ A+ G  L G +    DLL +L ++ 
Sbjct: 171 RGGQRSRPIDDIVAEAKQLADSGVQELNLVAQDLTAY-GHDLPG-RPKLHDLLKALVQVD 228

Query: 259 -GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
              +RL Y  ++PR   D LI+       +  YL +PVQ  SD++L SM R   +   + 
Sbjct: 229 VKWIRLHY--AYPRIFPDELIEVMASEPKIARYLDMPVQHVSDKLLLSMKRGRNSEFLKG 286

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
           ++ ++R   P + + +  IVG PGET++DF    + V    + +   F+YS   GT   +
Sbjct: 287 LLTKLRERVPGLVMRTSLIVGLPGETEEDFEMLKEFVKTQRFERLGVFQYSDEEGTAAYD 346

Query: 378 MLEQVDENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-----GKLV 429
           + ++V + +   R   ++ +QK++  +Q   N   VG+ +EVL+E    E      G+  
Sbjct: 347 LPDKVPQKLIERRWREVMAIQKRINREQ---NKKLVGKRLEVLVEGPAPETEHLLVGRHQ 403

Query: 430 GRSPWLQSVV-LNSKNHNIGDIIKVRITDVKISTLYGELV 468
           G++P +  +V +N      G+I+ V +T+     L   +V
Sbjct: 404 GQAPDIDGMVYINDGLAYPGEIVTVEVTEAHDYDLVARVV 443


>gi|83589922|ref|YP_429931.1| hypothetical protein Moth_1074 [Moorella thermoacetica ATCC 39073]
 gi|123752930|sp|Q2RJK1|RIMO_MOOTA RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|83572836|gb|ABC19388.1| SSU ribosomal protein S12P methylthiotransferase [Moorella
           thermoacetica ATCC 39073]
          Length = 432

 Score =  192 bits (488), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 139/451 (30%), Positives = 223/451 (49%), Gaps = 32/451 (7%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY-SFL 84
           R  V + GC  N  +S  M  +      E V+    A+++++NTC     A E+   + L
Sbjct: 3   RVAVITLGCPKNQVESEYMLGILEKNHLEVVSDPRQAEVVIINTCSFITAAREEALDTIL 62

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
              R   + R+        +VAGC+AQ    E+ +  P     +GP    RLPE++ R  
Sbjct: 63  ELARAANHPRL--------IVAGCLAQQYASELWQELPEAAAFIGPGATGRLPEIINRVL 114

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G+RV+D         E   +++ G        A+L I EGC+  CT+C +P  +G   S
Sbjct: 115 KGERVLDVPGPEMITGELPRLIEDGKP-----FAYLKIAEGCNNRCTYCTIPSIKGPYRS 169

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD--GEKCTFSDLLYSLSEIKGLVR 262
           R L +VV EA  L   G+ E+ L+ Q+  A+   GLD  GE     +LL  L+ I+G+  
Sbjct: 170 RPLEKVVAEAVSLAARGIKELVLVAQDTTAY---GLDCYGEY-RLPELLRRLARIEGIEW 225

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R   ++P  ++  LI+       ++PYL LP+Q  S+ +L+ M R  T     + I+ +
Sbjct: 226 VRLLYAYPTRITPELIEVMATEPGVVPYLDLPLQHASEGVLRRMGRPGTGAAGLRAIESL 285

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R   P+I I S FIVGFPGE ++DF+  +D +         +FK+SP  GT  +++  QV
Sbjct: 286 RRAIPEITIRSTFIVGFPGEEEEDFQILLDFLTDARLDWVGAFKFSPEEGTIAASLPGQV 345

Query: 383 DENVKAERLLCLQKKLREQQVSFNDAC----VGQIIEVLIEKHGKEKGKLVGRSPWLQSV 438
            E VK ER     ++L   Q S   AC    +G+ ++VL  K G E G+ + ++P +  V
Sbjct: 346 PEEVKEERY----QRLMLHQQSITRACNEGWLGREVQVL--KEGPEVGRSMRQAPEVDGV 399

Query: 439 V-LNSKNHNIGDIIKVRITDV-KISTLYGEL 467
           V +       G ++ V++T +  I    GE+
Sbjct: 400 VYVKGDPSPAGSMVTVKLTQLYNIYDFLGEI 430


>gi|238065376|sp|A8AIT5|RIMO_CITK8 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
          Length = 441

 Score =  192 bits (488), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 145/462 (31%), Positives = 236/462 (51%), Gaps = 45/462 (9%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  FV S GC  N+ DS R+     ++GY+ V S DDAD++++NTC   + A ++    
Sbjct: 8   PKIGFV-SLGCPKNLVDSERILTELRTEGYDVVPSYDDADMVIVNTCGFIDSAVQESLEA 66

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G         + E G   V+V GC+  A+ ++I    P V  + GP +Y ++ E +   
Sbjct: 67  IGEA-------LTENGK--VIVTGCLG-AKVDQIREVHPKVLEITGPHSYEQVLEHVHH- 115

Query: 144 RFGKRVVDTDYSVEDKFER-LSIV-DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
                     Y  + K    LS+V + G        A+L I EGC+  CTFC++P  RG 
Sbjct: 116 ----------YVPKPKHNPFLSLVPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGD 165

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYS 253
            +SR + +V+ EA++L+D GV EI ++ Q+ +A+      R    +GE  K +  DL   
Sbjct: 166 LVSRPIGEVLSEAKRLVDAGVKEILVISQDTSAYGVDVKHRTGFHNGEPVKTSMVDLCEQ 225

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
           LS++    RL Y   +P       + A G +   +PYL +P+Q  S RILK M R     
Sbjct: 226 LSKLGIWTRLHYVYPYPHVDDVIPLMAEGKI---LPYLDIPLQHASPRILKLMKRPGAVD 282

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
                I + R + P++ + S FIVGFPGET+DDF+  +D + +    +   FKYSP  G 
Sbjct: 283 RQLARIKQWREICPELTLRSTFIVGFPGETEDDFQMLLDFLKEARLDRVGCFKYSPVEGA 342

Query: 374 PGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKL 428
             + + +QV E VK E   R + LQ+++  +++      VG+ I V+I++  KE   G+ 
Sbjct: 343 GANALPDQVPEEVKEERWNRFMQLQQQISAERLQEK---VGREILVIIDEVDKEGAIGRS 399

Query: 429 VGRSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468
           +  +P +   V  +   N+  GD+I+V++ +     L+G  V
Sbjct: 400 MADAPEIDGAVYLNGETNVKPGDVIRVKVDNADEYDLWGSRV 441


>gi|302392275|ref|YP_003828095.1| 30S ribosomal protein S12P methylthiotransferase [Acetohalobium
           arabaticum DSM 5501]
 gi|302204352|gb|ADL13030.1| SSU ribosomal protein S12P methylthiotransferase [Acetohalobium
           arabaticum DSM 5501]
          Length = 442

 Score =  192 bits (488), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 137/449 (30%), Positives = 229/449 (51%), Gaps = 30/449 (6%)

Query: 33  GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92
           GC  N  D+  M  +    G++ VN    A+++++NTC     A E+    + ++   K 
Sbjct: 10  GCAKNQVDAEIMLGLIDEAGFKLVNDYSQAEVLIVNTCGFIGDAKEESIDTILQLAEYKK 69

Query: 93  SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK---RV 149
              K      ++V GC+AQ   EE+    P ++ ++G   + ++ E+++    GK    V
Sbjct: 70  DNCKS-----LIVTGCLAQRHLEELEAEIPEIDGILGTGNFDKIVEVIKETLSGKSRAEV 124

Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209
            + +++  ++  +  I        +  TA+L I EGC+  C++CV+P  RG   SR +  
Sbjct: 125 GNPEFNYHNRLPQKRI-------GQDYTAYLKIAEGCNNCCSYCVIPELRGKLHSREIED 177

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSH 269
           +V EA +L D GV E+ ++ Q++  + G  L GE     +LL  L ++KG+   R   ++
Sbjct: 178 IVTEAVELADQGVKEVNIIAQDITKY-GSDLYGEP-RLVELLTELMKVKGIKWFRLLYAY 235

Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329
           P D SD LI+     + +  Y+ LP+Q   D+I   M RR T  +   +I ++R   P I
Sbjct: 236 PNDFSDELIEVMAKHERICNYIDLPIQHVDDKIRSKMRRRGTKEDILSLIRKLRDRIPGI 295

Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA- 388
           +I +  IVGFPGET+D+F+  +D V +  + +   F YS   GT  + M +QV E +K  
Sbjct: 296 SIRTSLIVGFPGETEDEFKNLLDFVQQARFDRLGVFTYSREEGTAAAEMPDQVAEEIKEE 355

Query: 389 --ERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKL-VGRS----PWLQSVV- 439
             ER++ LQ+++    +  N   +G+ +EVLIE+    E  KL VGR+    P +  +V 
Sbjct: 356 RYERIMDLQQRI---SLERNQEWIGREVEVLIEEIQQNEDQKLAVGRTQQDAPEIDGLVY 412

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
           +       G+ IKVRI D     L GE V
Sbjct: 413 VEDVKAEPGEFIKVRIKDAYEYDLIGERV 441


>gi|225011708|ref|ZP_03702146.1| MiaB-like tRNA modifying enzyme [Flavobacteria bacterium MS024-2A]
 gi|225004211|gb|EEG42183.1| MiaB-like tRNA modifying enzyme [Flavobacteria bacterium MS024-2A]
          Length = 450

 Score =  192 bits (488), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 135/442 (30%), Positives = 220/442 (49%), Gaps = 34/442 (7%)

Query: 19  DQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAE 78
           DQ I   R    + GC++N  +S  +   F  + Y+RV+    A++ V+NTC + E A +
Sbjct: 12  DQSI--PRVAFHTLGCKLNFSESATIARDFDDKNYKRVDFNSPAEVYVINTCSVTENADK 69

Query: 79  KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPE 138
                  R++ L    +       V   GC AQ + EEI +    V++V+G    + L E
Sbjct: 70  -------RLKGLVQKALSHNPKGFVAAIGCYAQLQPEEISKLDG-VDLVLGATEKFNLIE 121

Query: 139 LLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
            +      K+     +S E   E  +     Y+      AFL +Q+GCD  CT+C +P  
Sbjct: 122 YVNDLSKNKQT--EIHSCE--IETANFYKSSYSTSDRTRAFLKVQDGCDYKCTYCTIPQA 177

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK---CTFSDLLYSLS 255
           RG+  S +L  +++  +K+ D+G+ EI L G N+  + GKG  G K    TF +L+ ++ 
Sbjct: 178 RGVSRSDTLENIINNVKKIGDSGLREIVLTGVNIGDY-GKGEFGNKKHQHTFLELINAID 236

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
            +K + R+R ++  P  ++D +I      +  +P+ H+P+QSGSDRILKSM RR+    Y
Sbjct: 237 MVKSIDRIRISSIEPNLLNDDIIDFVSGSNRFVPHFHIPLQSGSDRILKSMRRRYLTPLY 296

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
            Q + RI+   P+  I  D IVG+PGET++DF  +   +  +  +    F YS R  T  
Sbjct: 297 LQRVARIKEAMPNACIGVDVIVGYPGETEEDFLTSYRFLADLDVSYLHVFTYSERPNTEA 356

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG----- 430
             + E V   V+ +R   L+    +++ +F ++ +G+   VL E   K KG   G     
Sbjct: 357 LEIKEVVPHAVRNKRSKMLRALSVKKRRAFYESQLGKTYSVLFEGENK-KGYCTGFTENY 415

Query: 431 ---RSPW-------LQSVVLNS 442
              R+PW       L+ VVL+S
Sbjct: 416 VKVRTPWNPELVNTLKEVVLDS 437


>gi|157363921|ref|YP_001470688.1| MiaB-like tRNA modifying enzyme [Thermotoga lettingae TMO]
 gi|157314525|gb|ABV33624.1| MiaB-like tRNA modifying enzyme [Thermotoga lettingae TMO]
          Length = 433

 Score =  192 bits (488), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 121/400 (30%), Positives = 210/400 (52%), Gaps = 21/400 (5%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +R +V   GC++N Y+S  M +     G+    +  +ADL VLNTC +  +AA K    +
Sbjct: 2   KRAYVTFLGCKVNQYESEYMIEQLEQHGFVMSPNFSEADLCVLNTCAVTSEAARKSRQLI 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA- 143
            ++R       +   D ++V  GC A  + + ++      N+++G      L   + R  
Sbjct: 62  RKLR-------RSNPDAVIVATGCYAHIDAQSLIDIGA--NIIIGNNEKRNLVNYIARYF 112

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
                 VD     ++  E++        R     A++ +++GC++FC++C+VP TRG +I
Sbjct: 113 ENSSNFVDVSEPDQEVLEKVKSFLSDRTR-----AYIKLEDGCNEFCSYCIVPKTRGKQI 167

Query: 204 -SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKGLV 261
            S+ +  V+ E   L++NG  EI L G N+  + G+ +     + S LL +L ++I    
Sbjct: 168 RSKPVEVVIKEMNDLLNNGYKEIVLTGVNLGKY-GRDIG---TSLSMLLRTLLNQIHDDS 223

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R ++ + +D+SD LI      + L P+LH+P+QSGS+RIL+ MNR++T  E   I ++
Sbjct: 224 RIRLSSINVQDLSDELISLFALSNKLCPHLHIPLQSGSNRILQKMNRKYTVEEALDIFEK 283

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           ++S+    + ++D IVGFPGET  DF  T +L+ +IG+ +   FKYS R GT  S +   
Sbjct: 284 LKSINQYFSFTTDVIVGFPGETIGDFLQTQELIKEIGFVKVHIFKYSSRPGTVASKLGYH 343

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKH 421
           +  + K  R   L    +E    +    +G+I  VL+E +
Sbjct: 344 ISNDEKERRAKELAALCKEISEKYRKKSIGKIRHVLVEHN 383


>gi|260913493|ref|ZP_05919971.1| MiaB family RNA modification enzyme [Pasteurella dagmatis ATCC
           43325]
 gi|260632433|gb|EEX50606.1| MiaB family RNA modification enzyme [Pasteurella dagmatis ATCC
           43325]
          Length = 444

 Score =  192 bits (487), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 139/459 (30%), Positives = 228/459 (49%), Gaps = 52/459 (11%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ DS R+     S GY  + S ++ADL+++NTC   + A ++    +G     
Sbjct: 12  SLGCPKNLVDSERILTELRSDGYNIIPSYENADLVIVNTCGFIDSAVQESLEAIGE---- 67

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               ++E G   V+V GC+   E + I    P V  V GP +Y  +       +  K V 
Sbjct: 68  ---ALEENGK--VIVTGCLGAKE-DRIREVHPKVLEVTGPHSYEAV-----MTQVHKYVP 116

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
             +Y+         +   G        A+L I EGCD  CTFC++P  RG   SRS++QV
Sbjct: 117 KPEYNPYTAL----VPKQGVKLTPKHYAYLKISEGCDHRCTFCIIPSMRGDLDSRSITQV 172

Query: 211 VDEARKLIDNGVCEITLLGQNVNA---------------WRGKGLDGEKCTFSDLLYSLS 255
           +DEA++L+D GV E+ ++ Q+ +A               W G  +   K     L   L 
Sbjct: 173 LDEAKRLVDAGVKELLIVSQDTSAYALDQSKEVQNKTVFWNGMPI---KNNLMSLCEQLG 229

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
           ++   VRL Y   +P       + A G L   +PYL +P+Q  S ++LK+M R  +    
Sbjct: 230 KLGVWVRLHYVYPYPHVDDLIPLMAEGKL---LPYLDIPLQHASPKVLKAMKRPGSIDRT 286

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
            + I + R + P++ + S FIVGFPGET++DF+  +D + +    +   FK+SP  G   
Sbjct: 287 LERIKKWREICPELTLRSTFIVGFPGETEEDFQLLLDFLKEAQLDRVGCFKFSPVEGAVA 346

Query: 376 SNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVG 430
           ++M +QV E+VK E   R + LQ+++  Q++      VG+I+ V+I++  +E   G+ + 
Sbjct: 347 TDMPDQVPEDVKEERFHRFMQLQQEISAQRLQQK---VGKILSVIIDEIDEEGIIGRSMA 403

Query: 431 RSPWLQSVV----LNSKNHNIGDIIKVRITDVKISTLYG 465
            +P +  VV    ++  +  +G II+V IT      L+G
Sbjct: 404 DAPEIDGVVYIDNVSQIDVKVGQIIQVEITQADEYDLWG 442


>gi|315635047|ref|ZP_07890328.1| RNA modification enzyme [Aggregatibacter segnis ATCC 33393]
 gi|315476309|gb|EFU67060.1| RNA modification enzyme [Aggregatibacter segnis ATCC 33393]
          Length = 478

 Score =  192 bits (487), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 139/459 (30%), Positives = 226/459 (49%), Gaps = 52/459 (11%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ DS R+     S GY  + S ++ADL+++NTC   + A ++    +G     
Sbjct: 46  SLGCPKNLVDSERILTELRSNGYNIIPSYENADLVIVNTCGFIDSAVQESLEAIGE---- 101

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               ++E G   V+V GC+   E ++I +  P V  + GP +Y  +       +  K V 
Sbjct: 102 ---ALEENGK--VIVTGCLGAKE-DQIRQVHPKVLEISGPHSYETV-----MNQVQKYVP 150

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
              Y   + +E L +   G        A+L I EGCD  CTFC++P  RG   SR ++QV
Sbjct: 151 KPAY---NPYESL-LPAQGVKLTPKHYAYLKISEGCDHRCTFCIIPSMRGDLDSRPITQV 206

Query: 211 VDEARKLIDNGVCEITLLGQNVNA---------------WRGKGLDGEKCTFSDLLYSLS 255
           +DEA++L+D GV E+ ++ Q+ +A               W G  +   K     L   L 
Sbjct: 207 LDEAKRLVDAGVKELLIVSQDTSAYALDQTKENQNKTVFWNGMPI---KNNLISLCRQLG 263

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
            +   VRL Y   +P       + A G L   +PYL +P+Q  S +ILK+M R       
Sbjct: 264 NLGIWVRLHYVYPYPHVDELIPLMAEGKL---LPYLDIPLQHASPKILKAMKRPGKIDRT 320

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
            + I   R + P++ + S FIVGFPGET++DF+  +D + +    +   FK+SP  G P 
Sbjct: 321 LERIKTWREICPELTLRSTFIVGFPGETEEDFQMLLDFLKEAQLDRVGCFKFSPVEGAPA 380

Query: 376 SNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVG 430
           ++M +QV E+VK E   R + LQ+ +   ++      +G+ ++V+++   +E   G+ + 
Sbjct: 381 TDMPDQVPEDVKEERYHRFMQLQQAISAARLQQK---IGKTLKVIVDDINEEGIIGRSMA 437

Query: 431 RSPWLQSVVL----NSKNHNIGDIIKVRITDVKISTLYG 465
            +P +  +V     +    NIGD+I V ITD     L+G
Sbjct: 438 DAPEIDGLVYVDNQSQSAVNIGDVISVHITDADEYDLWG 476


>gi|291522742|emb|CBK81035.1| MiaB-like tRNA modifying enzyme [Coprococcus catus GD/7]
          Length = 454

 Score =  192 bits (487), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 124/418 (29%), Positives = 220/418 (52%), Gaps = 40/418 (9%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  M   F ++GYE      +A + V+NTC +   A  K    + R +  
Sbjct: 9   TLGCKVNQYETDAMRGSFEAEGYEVKEFSQEASVYVINTCTVTNMADRKSRQMMHRAK-- 66

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER-ARFGKRV 149
                K+  D ++V  GC  QA  E+ L    ++++V+G     ++ +++E+  +  +  
Sbjct: 67  -----KKNPDGIIVAVGCYVQAAKEQ-LEEDTLIDLVIGNNMKSQVVQIVEQYIQDNRHT 120

Query: 150 VDTDYSVED-----KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            D D  V D     ++E + I     + +    A++ IQ+GC++FC++C++PY RG   S
Sbjct: 121 EDRDAYVADIAHSHEYETMHIETVSEHTR----AYIKIQDGCNQFCSYCIIPYARGRVRS 176

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE-------------KCTFSDLL 251
           R +  ++ E R L  NG  EI L G +++++   GLD E                  DL+
Sbjct: 177 RKMEDILQEVRNLTANGYKEIVLTGIHISSY---GLDFEHTADEQEDYVPFKNSALIDLI 233

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
            +LS I+GL R+R  +  PR +++  ++    +  + P+ HL +QSG D  LK MNR +T
Sbjct: 234 EALSGIEGLERIRLGSLEPRIITENFVRRLCKVPQICPHFHLSLQSGCDETLKRMNRHYT 293

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
              Y +    +R      A+++D IVGFPGET+++F  T   ++ + ++    FKYS R 
Sbjct: 294 TALYLEKCGILRQYFDRPALTTDVIVGFPGETEEEFAQTERFLETVHFSDMHIFKYSKRR 353

Query: 372 GTPGSNMLEQVD---ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG 426
           GT  ++M  Q+D   ++V++E+L+ L K++++    F +AC  Q   VLIE+  +  G
Sbjct: 354 GTKAADMPNQIDPQLQSVRSEKLIALGKRMKD---DFLEACKDQEQIVLIEEETEIDG 408


>gi|169335621|ref|ZP_02862814.1| hypothetical protein ANASTE_02041 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258359|gb|EDS72325.1| hypothetical protein ANASTE_02041 [Anaerofustis stercorihominis DSM
           17244]
          Length = 448

 Score =  192 bits (487), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 127/419 (30%), Positives = 222/419 (52%), Gaps = 29/419 (6%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ FV + GC  N  DS  +  +   QGYE V+    +D I++NTC     A E+  + +
Sbjct: 6   KKVFVLTLGCPKNTVDSENIMYLLSKQGYEIVDDATVSDYIIINTCTFIHDAMEESINSI 65

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
                +K  R     ++ ++V GC+AQ   +++    P V+  VG   +Y + +++    
Sbjct: 66  LEATLVKKDR----SEVKIIVTGCLAQRYSKDLKEEIPEVDAFVGTGEFYNMDKII---- 117

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT-----AFLTIQEGCDKFCTFCVVPYTR 199
              + ++T+ S E   +  +I    +   R +T     A+L + EGCDK CT+CV+P  R
Sbjct: 118 ---KSMETEESDEVIVKVDNIDCPIFETDRTLTTPSHFAYLKVSEGCDKHCTYCVIPSIR 174

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G + SR +  +V EA++L D GV E+ L+ Q+V  + G  L GE+    +LL  L++I+ 
Sbjct: 175 GKQRSRKIEDIVSEAKRLADRGVKELILIAQDVGEY-GTDLYGER-KLPELLEELNKIES 232

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           +  +R    +P  +SD LI    +LD ++ Y+ +P+Q  +D ILK M R+ +  +   +I
Sbjct: 233 IHWIRVLYIYPETVSDELIDKFVNLDKVLKYIDMPLQHINDNILKKMGRKTSKEDILTLI 292

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV-----DKIGYAQAFSFKYSPRLGTP 374
            ++RS    I I S FI  FPGET+++ +  ++ +     D++G+     FKYS   GTP
Sbjct: 293 RKLRSKVNGIKIRSTFITAFPGETEENHKELLEFIKLYQLDRVGF-----FKYSREEGTP 347

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL-VGRS 432
             +M  QV E +K ER + L     +      ++ + + +EVLIE+  +++  + +GRS
Sbjct: 348 AYDMDNQVSEEIKDERYMELMSAQEDVSEELMESYLDKTLEVLIEEKVEDEDNVYIGRS 406


>gi|206890255|ref|YP_002248876.1| hypothetical protein THEYE_A1048 [Thermodesulfovibrio yellowstonii
           DSM 11347]
 gi|206742193|gb|ACI21250.1| conserved hypothetical protein [Thermodesulfovibrio yellowstonii
           DSM 11347]
          Length = 407

 Score =  192 bits (487), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 128/431 (29%), Positives = 226/431 (52%), Gaps = 44/431 (10%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           +YGC++N  ++ R+E +  ++GY   ++ ++A L ++NTC +  KA  +    + + + L
Sbjct: 7   TYGCRVNQAEAQRLEKLLTTKGYVVTSNPEEASLWIINTCAVTHKAEVQSRHIINKAKKL 66

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
                         V GC       E+ R     N+ V              + F K  +
Sbjct: 67  GKK---------AFVTGCYV-----ELCRIENSENLKVF-------------SNFEKDSI 99

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
             ++   +K + L I     +R R   A + +Q+GC+++C++C+VPY R    S  + Q+
Sbjct: 100 INNFENLNKSDTLKI-----SRHR---AIIKVQDGCNQYCSYCIVPYLRRKPRSYKIEQI 151

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE-KCTFSDLLYS-LSEIKGLVRLRYTTS 268
           + E +     G+ E+ L G N+  +   G+D E K + + LL + L E  G  R+R ++ 
Sbjct: 152 MKEIKDYQSIGIKEVVLSGINIGLY---GIDYENKISLNKLLKAILKETSGF-RIRLSSI 207

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
               +    ++   D + +  +LH+P+Q GSDRIL  MNRR+ A+++ QII++I  + PD
Sbjct: 208 EINHIDQEFLEIISD-NRICKHLHIPLQHGSDRILGLMNRRYDAFQFSQIIEKIFKLYPD 266

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           I+I +D +VGFP ET+DDF+ T+ L++KIG++    F YS R  T  S M EQ+ EN+K 
Sbjct: 267 ISIGTDVMVGFPSETEDDFKRTLQLIEKIGFSYLHVFPYSKRPFTKASEMTEQIPENIKR 326

Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIG 448
           +R  CL +  + +++ +    +G  +EV+IE   K+ G   G S       +++K    G
Sbjct: 327 QRADCLIEVGKRKKLEYIKKFIGSELEVIIE--NKKNGFFSGTSDNYIKCFVDNKKLVAG 384

Query: 449 DIIKVRITDVK 459
           +I KV + ++K
Sbjct: 385 NIFKVIVNNIK 395


>gi|294085380|ref|YP_003552140.1| MiaB-like tRNA modifying enzyme [Candidatus Puniceispirillum
           marinum IMCC1322]
 gi|292664955|gb|ADE40056.1| MiaB-like tRNA modifying enzyme [Candidatus Puniceispirillum
           marinum IMCC1322]
          Length = 439

 Score =  192 bits (487), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 134/458 (29%), Positives = 207/458 (45%), Gaps = 45/458 (9%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V+++GC++N+++S  + +   + G +        D I+ NTC +  +A ++    + + R
Sbjct: 9   VETFGCRLNIWESEVIREKAAAAGVQ--------DAIIFNTCAVTSEAEKQARQAIRKAR 60

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
                  +E  D  ++V GC AQ   E        V+VV+G     +     +       
Sbjct: 61  -------RENPDSQIIVTGCAAQIAAENWASMDE-VDVVLGNHDKLQAESWRDLGSASAA 112

Query: 149 VVD--TDYSVEDKFERLS----------------IVDGGYNRKRGVTAFLTIQEGCDKFC 190
            +D  +D + ED  E  +                ++DG     R   AFL IQ+GCD  C
Sbjct: 113 CIDDVSDGTREDVREGTAAEVVSDIMQVREMASHMLDGFQEHTR---AFLQIQQGCDHRC 169

Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDL 250
           TFC++PY RG   S  L Q++D A+ L+D G CEI L G ++ +W G  L G       +
Sbjct: 170 TFCIIPYGRGNNRSAGLHQIIDAAQALVDGGACEIVLTGVDITSW-GSDLAGRPRLGRLV 228

Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
              L EI  L RLR ++  P +    L+   GD D LMP+ H+  Q G D ILK M RRH
Sbjct: 229 RALLREIPALPRLRLSSIDPAEGDAELMAVLGDDDRLMPHFHISAQHGDDLILKRMKRRH 288

Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370
              +  +  D  R  RPDI   +D I GFP E D   +A+ +++ + G      F YSPR
Sbjct: 289 LGRDIIRFCDEARRRRPDIVFGADMIAGFPTEDDAAHQASCEMIARAGITHLHVFPYSPR 348

Query: 371 LGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG 430
            GTP + M      ++K  R   L+     +     D  +G   ++L+E   K  G+   
Sbjct: 349 PGTPAALMPPVAAADIK-NRAASLRAIGSGRLSHLLDNSIGSFDQLLVESGNKGHGRNFS 407

Query: 431 RSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           +      + L       G ++ V+ITD     L  E V
Sbjct: 408 K------IRLQGDYVPAGSLVDVKITDRDSQELIAERV 439


>gi|145637773|ref|ZP_01793423.1| hypothetical protein CGSHiHH_02685 [Haemophilus influenzae PittHH]
 gi|145269018|gb|EDK08971.1| hypothetical protein CGSHiHH_02685 [Haemophilus influenzae PittHH]
          Length = 445

 Score =  192 bits (487), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 146/469 (31%), Positives = 240/469 (51%), Gaps = 50/469 (10%)

Query: 20  QCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEK 79
           Q   P   FV S GC  N+ DS R+     + GY  V S ++ DL+++NTC   + A ++
Sbjct: 2   QNSTPSIGFV-SLGCPKNLVDSERILTELRTDGYNIVPSYENVDLVIVNTCGFIDSAVQE 60

Query: 80  VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL 139
               +G         ++E G   V+V GC+   E ++I    P V  V GP +Y  +  +
Sbjct: 61  SLEAIGE-------ALEENGR--VIVTGCLGAKE-DQIREVHPKVLEVSGPHSYETV--M 108

Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
            +  ++  +   + Y+     + + +    Y       A+L I EGCD  CTFC++P  R
Sbjct: 109 AQVHKYVSKPTHSPYTSLVPKQGVKLTPKHY-------AYLKISEGCDHRCTFCIIPSMR 161

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-----RGKGLDGEKCTF------- 247
           G   SRS++QV+DEA++L + GV E+ ++ Q+ +A+     R +G  G K  F       
Sbjct: 162 GDLESRSITQVLDEAKRLAEVGVKELLVVSQDTSAYSMDLKRQEG--GVKTAFWNGMPIK 219

Query: 248 SDLLYSLSEIKGL---VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304
           +DL+    ++  L   VRL Y   +P    D LI    D   L+PYL +P+Q  S +ILK
Sbjct: 220 NDLMTLCKQLGKLGIWVRLHYVYPYPH--VDDLIPLMAD-GTLLPYLDIPLQHASPKILK 276

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
           +M R  +     + I + R +  D+ + S FIVGFPGET++DF+  +D + +    +   
Sbjct: 277 AMKRPGSIDRTLERIKQWREICSDLTLRSTFIVGFPGETEEDFQLLLDFLKEAQLDRVGC 336

Query: 365 FKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE 424
           FK+SP  G P ++M +QV E+VK ER     +  +E   +     +G+ ++VL+++  +E
Sbjct: 337 FKFSPVEGAPATDMADQVPEDVKEERFHRFMQLQQEISANRLKQKIGKTLDVLVDEIDEE 396

Query: 425 KGKLVGRS----PWLQSVV----LNSKNHNIGDIIKVRITDVKISTLYG 465
              ++GRS    P +  +V    L+  N  +GD+IKV IT+     L+G
Sbjct: 397 --GIIGRSKADAPEVDGLVYVDNLSGINVKVGDVIKVTITNSDEYDLWG 443


>gi|303240746|ref|ZP_07327259.1| MiaB-like tRNA modifying enzyme YliG [Acetivibrio cellulolyticus
           CD2]
 gi|302591634|gb|EFL61369.1| MiaB-like tRNA modifying enzyme YliG [Acetivibrio cellulolyticus
           CD2]
          Length = 452

 Score =  192 bits (487), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 138/459 (30%), Positives = 232/459 (50%), Gaps = 29/459 (6%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++  + S GC  N+ DS  M      + YE       AD+I++NTC   E A E+  + +
Sbjct: 3   KKIGIVSLGCPKNLVDSEIMLGTLKKKDYEITPDEKHADIIIVNTCGFIESAIEESINAI 62

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             +   K  + +     L++V GC+AQ   E+IL+  P V+ VVG   Y ++ E++++  
Sbjct: 63  LEMVGYKQHKCR-----LLIVTGCLAQRYKEQILKEIPEVDAVVGTGGYGQIAEIIDKLY 117

Query: 145 FG-------KRV-VDTDYSVED-KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
                    KR+ +D +Y+VE  K ER+     GY       A+L I EGCD  CT+CV+
Sbjct: 118 EAEAKTPQDKRLFLDFEYNVEYMKEERVLSSKKGY-------AYLKIAEGCDNCCTYCVI 170

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
           P  RG   SRS+  ++ +A  L   GV E+ L+ Q++  + G+ +  EK    +L+  + 
Sbjct: 171 PSLRGPYTSRSMEDIIQDAGHLAKQGVKEVILVAQDITRY-GEDIYNEK-KLVELIRQIC 228

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
            I+G+  +R    +P ++ + LI        ++ YL +P+Q  SD+IL +M RR T    
Sbjct: 229 RIEGIEWIRLLYCYPEEIDENLISEMASNPKILKYLDMPIQHASDKILSAMGRRGTFENL 288

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
             ++ +++   PDI I +  IVGFPGE + DFR     V K  + +   F YS   GT  
Sbjct: 289 EALLTKLKERIPDIVIRTTLIVGFPGEDEKDFRILYGFVKKHQFDRLGVFPYSKEEGTLA 348

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS--- 432
            +M  Q+  +VK  RL  + +  +E  +  N+A + ++  VL+E    +     GRS   
Sbjct: 349 FDMKPQIKRSVKESRLSDIMQLQKEIVLEKNNARLNKVYTVLVEGVADDGLFYTGRSYAE 408

Query: 433 -PWLQSVV-LNSKNH-NIGDIIKVRITDVKISTLYGELV 468
            P + +++   SK+    G  ++V+I ++    L GE+V
Sbjct: 409 APEIDNLIYFTSKDPLEFGSFVEVKILNIDEYDLIGEVV 447


>gi|197118030|ref|YP_002138457.1| MiaB-like tRNA-modifying enzyme [Geobacter bemidjiensis Bem]
 gi|197087390|gb|ACH38661.1| MiaB-like tRNA-modifying enzyme [Geobacter bemidjiensis Bem]
          Length = 429

 Score =  192 bits (487), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 131/441 (29%), Positives = 210/441 (47%), Gaps = 22/441 (4%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           + + GC++N ++S  M       GY  V   D AD+ V+N+C +  K   +    + R  
Sbjct: 7   ITTLGCKINQFESAAMTQALEQNGYSMVPFSDKADIYVINSCTVTAKTDAESRRLIRRAT 66

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
            L         +  VVV GC AQ   EE+L+ +  VN+++G      +   LE      R
Sbjct: 67  RLNP-------EARVVVTGCYAQMNAEELLKLAG-VNLILGNSEKKDIVGFLEGMDDQPR 118

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
            V +D S+E   +   +     + +    AFL +Q GCD  C +C+VPY RG   S ++ 
Sbjct: 119 AVVSDISLEKTGDTAPLETFAEHTR----AFLQVQNGCDARCAYCIVPYARGASRSVAVQ 174

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR-LRYTT 267
           + +D        G  EI L G ++ A+   GLD    T    L   ++ +G+VR LR  +
Sbjct: 175 EALDGMAAFAAQGFQEIVLTGIHLGAY---GLDLAPATDLLGLMQKAQEQGVVRRLRIGS 231

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
             P ++S  LI       ++ P+LHLP+QSGSD +L  MNR +    +R+++  + S  P
Sbjct: 232 VEPTEVSKQLIDFMARSPMVCPHLHLPLQSGSDSVLSRMNRGYDTALFREVVQSLASAMP 291

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
           ++ I SD I GFPGE+D +F  T   +D +  A    F +S R GTP + M  QV   V 
Sbjct: 292 EVCIGSDVIAGFPGESDQEFDETYRFIDSLPLAYLHVFPFSQRPGTPAATMTPQVHPKVI 351

Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNI 447
            ER   L+     ++  +    VG+ + VL++K  K      G S    +V++      +
Sbjct: 352 KERAEALRVLSERKKSDYAAGFVGRELRVLVQKGEK------GLSRNYLTVLIEESKGLV 405

Query: 448 GDIIKVRITDVKISTLYGELV 468
              + V++T  K   L G ++
Sbjct: 406 NREVTVQVTGAKDGELVGRVL 426


>gi|302338031|ref|YP_003803237.1| MiaB-like tRNA modifying enzyme [Spirochaeta smaragdinae DSM 11293]
 gi|301635216|gb|ADK80643.1| MiaB-like tRNA modifying enzyme [Spirochaeta smaragdinae DSM 11293]
          Length = 453

 Score =  192 bits (487), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 137/425 (32%), Positives = 211/425 (49%), Gaps = 43/425 (10%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERV--NSMDDADLIVLNTCHIREKAAEKVYSFL 84
           FF  + GC++N  +S  +   F  +G+  V  ++   A++ V+N+C +  KA +K     
Sbjct: 5   FF--TLGCKLNQSESEALATAFGRRGFSLVPPSAKGKAEVFVVNSCTVTSKAEQKA---- 58

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGP----QTYYRLPELL 140
              R +  S  +     +V+V GC AQ + +++       NVVV P     +   LPE L
Sbjct: 59  ---RRMIRSFARNNPLSVVLVTGCYAQMDPDQVAALGE--NVVVLPLSAKASILDLPEFL 113

Query: 141 ERARFGKRVVDT---------------DYSVEDKFERLSIVDGGYN-RKRGVTAFLTIQE 184
           E A  G  ++D                D S  D+F R  I     + R RG   FL IQ+
Sbjct: 114 ESAAGGYTLLDAVQSFAREKSAAAFAGDPSASDRF-RFEISGAEKSGRSRG---FLKIQD 169

Query: 185 GCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK 244
           GCD  CT+C V   RG  +S + S+V+  A  L D G  EI L G N+ AW+   L    
Sbjct: 170 GCDNACTYCRVRLARGPSVSLASSEVLRRAAALADEGFGEIVLTGVNLTAWQEGDL---- 225

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304
             F+DLL  ++      R+R +++ P  + + L  A     V  P+ HLPVQSGSD +L 
Sbjct: 226 -RFADLLALMTSDSRAYRIRLSSTEPDAIDEKLASAASSPRV-RPHFHLPVQSGSDTVLA 283

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
           S+ R +TA +  + +  +R  + D  +++D IVG PGE+D DF AT+ LV++ G+A   +
Sbjct: 284 SVGRHYTADDVLRAVALLRKAKEDPFLAADIIVGLPGESDADFEATLSLVERCGFAHIHA 343

Query: 365 FKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE 424
           F +SPR GTP      +V E + AER++ + +   +   SF     G   E +IE+  + 
Sbjct: 344 FPFSPRPGTPLYTARGRVPERIAAERMVEIGRLSSQLHASFVARRAGSQEEAVIERLPEN 403

Query: 425 KGKLV 429
              LV
Sbjct: 404 GQALV 408


>gi|114566788|ref|YP_753942.1| 2-methylthioadenine synthetase [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
 gi|122318190|sp|Q0AXI3|RIMO_SYNWW RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|114337723|gb|ABI68571.1| 2-methylthioadenine synthetase [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
          Length = 439

 Score =  192 bits (487), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 133/450 (29%), Positives = 231/450 (51%), Gaps = 33/450 (7%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N  D+  M       G+  VNS++ ADL+V+NTC     A E+    +     L
Sbjct: 7   SLGCSKNRVDTEVMMAALKKAGHRIVNSLERADLVVVNTCGFITPAKEESIEAIIETAEL 66

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
           K    K+G    ++ AGC++Q  G E+L   P ++ V G  +   +  ++ R   G+RV 
Sbjct: 67  K----KKGSLQFLIAAGCLSQRYGRELLLEIPELDGVFGISSVSSIAGVVNRIAQGERVC 122

Query: 151 DTDYSVEDKFER----LSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
            T+ +  + FE+    L+   G        +A+L I EGC+  C++CV+P  RG   SR 
Sbjct: 123 FTEATPTEYFEKGHRILTTPPG--------SAYLKISEGCNNSCSYCVIPSIRGKLRSRQ 174

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRY 265
           ++++++EA +L+  G+ E+ L+ Q+ +A+   G D   +     LL  LS++ GL  +R 
Sbjct: 175 INELLNEAAQLLKMGIKELVLVAQDTSAY---GHDISPQSALPTLLRELSKLDGLEWIRL 231

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
              HP  +SD +I      + ++PYL +P+Q  S +ILK M+RRH     R +I ++R+ 
Sbjct: 232 MYLHPLYLSDDIIDVVAYENKVLPYLDIPIQHASSKILKLMHRRHDNSHLRTMISKLRAR 291

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P++ + +  ++GFPGE + DF    + V +  +    +F + P  G+  + +  Q+++ 
Sbjct: 292 IPNLTLRTTVMLGFPGEEEKDFAELYEFVAESQFDWLGAFSFVPEEGSKAALLPNQIEDE 351

Query: 386 VKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSV 438
           +KAER   +L LQ+K+  Q+   N A +    +VLI      K   VGR+    P +  +
Sbjct: 352 IKAERKDKILRLQQKITRQK---NLARINTQEKVLISSQ-LSKNLFVGRTYFQAPEVDGL 407

Query: 439 VLNSKNHNI--GDIIKVRITDVKISTLYGE 466
            L   +  +  GD + V++  V+   + GE
Sbjct: 408 TLVKTDFKLTKGDFVDVQLVGVRNYDMIGE 437


>gi|328955574|ref|YP_004372907.1| SSU ribosomal protein S12P methylthiotransferase [Coriobacterium
           glomerans PW2]
 gi|328455898|gb|AEB07092.1| SSU ribosomal protein S12P methylthiotransferase [Coriobacterium
           glomerans PW2]
          Length = 448

 Score =  191 bits (486), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 129/452 (28%), Positives = 216/452 (47%), Gaps = 30/452 (6%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC  N  D+ RM  +  S GY+   S DDA+++++NTC     A  +       +   
Sbjct: 12  TLGCAKNEVDTDRMRALLLSNGYQEAASSDDANVVIVNTCSFLTSATSESIECTLALAEQ 71

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
             + I+   D+ +V+ GCV    G+++    P V   V      R+  +L+     +R  
Sbjct: 72  TTAGIR---DVPLVMCGCVPSRYGDDLPAELPEVAAFVRTDEEDRIVSVLDDLLGVQR-- 126

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
                     E  + +        G  A++ I +GCD+ C+FCV+P+ RG   SR  + +
Sbjct: 127 ----------ETPAFIPRIKRTVEGAVAYVKISDGCDRLCSFCVIPFIRGRYHSRPAADI 176

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRG-----KGLDGEKCTFSDLLYSLSEIKGL-VRLR 264
           + EA +L+  GV EI L+GQ+   W G      G  G       L+   + ++   V +R
Sbjct: 177 IAEAVELVSGGVREIVLIGQDTGVWGGDLPAAAGTGGPANLAQLLVALAAALRPAHVWIR 236

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
                P  M+D LI A  D   ++PY+ +P+Q  S R+L +M R  +  E   + +R+R 
Sbjct: 237 VLYLQPEGMTDELIAAIRDTPEVLPYIDIPIQHVSARLLAAMRRTGSREELEALFERLRR 296

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             P + I S  +VGFPGE+D++    ++ +  +G+     F YS   GT  + + EQ+DE
Sbjct: 297 TIPHMVIRSTAMVGFPGESDEEAAELLEFMASVGFDYTSVFAYSAEEGTVAARLTEQIDE 356

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG--KLVGRSPWLQ------ 436
            VK ER         E   +   A VG+  +V+++    E G  +L+G + W Q      
Sbjct: 357 QVKLERQQAAVDLAEELGFAATAAHVGETADVIVDGVEDEDGELELIGHA-WFQAPDLDG 415

Query: 437 SVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           +V L++ + ++GDI+KVR TD     L G ++
Sbjct: 416 AVHLDATDASVGDILKVRFTDSFCYELVGSVI 447


>gi|254239267|ref|ZP_04932590.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
 gi|126171198|gb|EAZ56709.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
          Length = 440

 Score =  191 bits (486), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 151/472 (31%), Positives = 229/472 (48%), Gaps = 64/472 (13%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  FV S GC   + DS R+      +GYE V + +DAD++V+NTC   + A  +    
Sbjct: 6   PKVGFV-SLGCPKALVDSERILTQLRMEGYEVVPTYEDADVVVVNTCGFIDSAKAESLEV 64

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G         I E G   V+V GC+   E   I    P V  V GPQ Y ++       
Sbjct: 65  IGE-------AIAENGK--VIVTGCMG-VEEHAIRDVHPSVLAVTGPQQYEQV------- 107

Query: 144 RFGKRVVDTDYSVEDKFERLSIVD----GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
                V      V  K E   +VD     G        A+L I EGC+  C+FC++P  R
Sbjct: 108 -----VTAVHEVVPPKTEHNPLVDLVPPQGVKLTPRHYAYLKISEGCNHSCSFCIIPSMR 162

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFS 248
           G  +SR +  V+ EA +L+  GV E+ ++ Q+ +A           W G+ +   K    
Sbjct: 163 GKLVSRPVGDVLSEAERLVKAGVKELLVISQDTSAYGVDLKYKTDFWNGQPV---KTRMK 219

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
           +L  +LS +   VRL Y   +P       + A G    L+PYL +P Q  S ++LK+M R
Sbjct: 220 ELCEALSSMGVWVRLHYVYPYPNVDDVIPLMAAGK---LLPYLDIPFQHASPKVLKAMKR 276

Query: 309 RHTAYEYRQI--IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
              A+E + +  I + R + P++ I S FIVGFPGET++DF+  +D + +    +   F+
Sbjct: 277 --PAFEDKTLARIKQWREICPELTIRSTFIVGFPGETEEDFQYLLDWLTEAQLDRVGCFQ 334

Query: 367 YSPRLGTPGSNM-LEQVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422
           YSP  G P + + LE V + VK    ER +  Q+ +   ++ F    VG+ IEVLI++  
Sbjct: 335 YSPVEGAPANELGLEPVPDEVKQDRWERFMAHQQAISAARLQFK---VGKEIEVLIDEVD 391

Query: 423 KEKGKLVGRSPWLQS------VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           ++    VGRS W  +      V ++S     GD ++VRITD     L+ ELV
Sbjct: 392 EQGA--VGRS-WADAPEIDGNVFVDSDELKPGDKVRVRITDADEYDLWAELV 440


>gi|258516263|ref|YP_003192485.1| MiaB-like tRNA modifying enzyme YliG [Desulfotomaculum acetoxidans
           DSM 771]
 gi|257779968|gb|ACV63862.1| MiaB-like tRNA modifying enzyme YliG [Desulfotomaculum acetoxidans
           DSM 771]
          Length = 446

 Score =  191 bits (486), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 143/455 (31%), Positives = 227/455 (49%), Gaps = 35/455 (7%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ D+  M       GY   N   DA+++V+NTC    +A E+  + +     L
Sbjct: 9   SLGCAKNLVDTEIMLGFLKRAGYSITNREKDAEVLVVNTCGFITEAKEEAINTI-----L 63

Query: 91  KNSRIKEGGDL-LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149
           + ++ K GG    ++VAGC+AQ    E+L+  P ++ ++G  +  ++  ++ER   G+RV
Sbjct: 64  EMAQFKLGGKCRALLVAGCLAQRYAPELLKEMPEIDGILGIGSIGQIVSVIERVLAGERV 123

Query: 150 VDT---DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
            +    +Y   +    L+            TA+L I EGCD  C++C +P  RG  +SR 
Sbjct: 124 REVGAPEYVFAETARILATPP--------YTAYLKIAEGCDNKCSYCAIPGIRGSFLSRK 175

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
           +  +  EA  L   GV E  L+ Q+   + G  L G K + S+L+  L+ I  +  +R  
Sbjct: 176 IDSIKKEAAALAAQGVREAVLIAQDTTKY-GFDLYG-KFSLSNLIKELTLINDIEWIRLL 233

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
             +P   +  LI        +  YL +P+Q  SD IL SMNR  TA + R++I+++R   
Sbjct: 234 YCYPSKFTPELIDVLASEKKVCRYLDIPLQHASDSILLSMNRSGTAEQNRRLIEKLRQAV 293

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
             IA+ + FIVGFPGET+ DF+  +D + +I + +   F YSP   TP + +  Q+ E++
Sbjct: 294 SGIALRTSFIVGFPGETEADFQTLLDYMQEIRFDRVGIFVYSPEEDTPAAALDNQIAEDI 353

Query: 387 KA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIE--KHGKEKGKL--VGRS----PWL 435
           K    ER + LQ+K+  +    N   VG ++ VLIE     KE+G     GRS    P +
Sbjct: 354 KQDRYERAMLLQQKISLEN---NRRKVGSVVSVLIEGIARNKEEGNFTYTGRSEFDAPGI 410

Query: 436 QSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468
              VL      +  G+I+ V I       L GEL 
Sbjct: 411 DGKVLVETQEKLSAGEIVPVLIKKAYEYDLIGELT 445


>gi|312793173|ref|YP_004026096.1| miab-like tRNA modifying enzyme ylig [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312180313|gb|ADQ40483.1| MiaB-like tRNA modifying enzyme YliG [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 440

 Score =  191 bits (486), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 137/453 (30%), Positives = 228/453 (50%), Gaps = 35/453 (7%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ DS  M       G+E  ++ +DAD+IV+NTC     A ++    +  +   
Sbjct: 8   SLGCNKNLVDSEIMMGACVKAGFEITSNAEDADVIVVNTCGFINDAKQESIDTILDMAEY 67

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
           KN + K      ++V GC+ Q   +EIL + P V+ ++G +   +LPE++     GK+ +
Sbjct: 68  KNKKCK-----FLIVTGCLTQRYKDEILEQMPEVDAILGVKEMLKLPEVIRGLYEGKQKI 122

Query: 151 D-----TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                 T +       R+      Y       A++ I EGC+  C++C +P  RG   SR
Sbjct: 123 KMFDDATSFVYTSSMPRVIATPRYY-------AYIKIAEGCNNRCSYCSIPLIRGKYTSR 175

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            +  +V EA++L   G  EI L  Q+   + G  L G+K     LL  L +I+ +  +R+
Sbjct: 176 PIEDIVKEAKELAKKGYQEIVLTAQDTTKY-GLDLYGKK-MLPSLLEELEKIEKIKWIRF 233

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
             S+P D+ + LI+       ++ Y  +P+Q  +DRILK MNR+ T    +++I++IR  
Sbjct: 234 LYSYPEDVDENLIEVVKSSSKIVNYFDIPIQHINDRILKLMNRKTTKEGIKRLIEKIRRS 293

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
             ++ I +  +VGFP ETD++F      +    + +  +F YS   GTP S  L QVD+ 
Sbjct: 294 FDEVVIRTTVLVGFPTETDEEFEELCSFLRWAEFDRLGAFMYSQEEGTPASQ-LPQVDDE 352

Query: 386 VKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL-VGRSPWL------ 435
           VK    E++L +Q+K+ ++Q   N   VG+  EV+IE   K+K    +GRS +       
Sbjct: 353 VKQRRYEKVLNIQRKISKKQ---NKKRVGREYEVVIE--AKDKNNFYIGRSQFEAPEVDG 407

Query: 436 QSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           + +V +      G  +KV+I D     L GE++
Sbjct: 408 KVLVFSQNKLTAGQFVKVKILDAFEYDLVGEII 440


>gi|317132913|ref|YP_004092227.1| MiaB-like tRNA modifying enzyme YliG [Ethanoligenens harbinense
           YUAN-3]
 gi|315470892|gb|ADU27496.1| MiaB-like tRNA modifying enzyme YliG [Ethanoligenens harbinense
           YUAN-3]
          Length = 451

 Score =  191 bits (486), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 136/457 (29%), Positives = 224/457 (49%), Gaps = 28/457 (6%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
            P R  + S GC  N  D+  M      +G+      D AD++++NTC   E A ++   
Sbjct: 4   TPIRVGMISLGCPKNQVDAEVMLAKLTGEGFTLTPHADAADVVIVNTCGFIEDAKKESIE 63

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +  +  LK    KEG    +VV GC+++   +E+ +  P VN ++      R  ++ E 
Sbjct: 64  NILEMAQLK----KEGAIRGLVVTGCLSERYFKEMRQEFPEVNCIL---QVGRAGDIAEA 116

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT--AFLTIQEGCDKFCTFCVVPYTRG 200
            R        D+S   +    S+  GG      +   ++L I EGCD  CT+C++P  RG
Sbjct: 117 VRAAADGGTLDFSGRPE----SLAAGGTRVLTTLPFYSYLKIAEGCDNHCTYCIIPKLRG 172

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
              SR L  +V EA +L   GV E+TL+ Q+   + G  L G K    +LL     I GL
Sbjct: 173 RYRSRPLDDLVREAEQLAARGVRELTLVAQDTTRY-GTDLSGGKRMLPELLRRFCRIDGL 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
             +R    +P  + D LI      + ++PYL +P+Q  S R++++MNRR +  E   ++ 
Sbjct: 232 HWVRLLYCYPEALDDELIDTIASEEKVVPYLDMPIQHVSPRVVRAMNRRMSKAEITALVC 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R+  PD+ + +  IVGFPGET+++F      V +  + +  +F YS   GTP + +  
Sbjct: 292 KLRARIPDVTLRTTLIVGFPGETEEEFAELAAFVRETRFERLGAFAYSQEEGTPAAELPG 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDAC----VGQIIEVLIEKHGKEKGKLVGRS---- 432
           Q+DE+VK  R    Q+++ E+Q+   DA     +G  +EVL+E + +  G   GRS    
Sbjct: 352 QIDEDVKKRR----QEQIMEEQMLVADANNQRRLGSTVEVLVEGYDRYAGCWFGRSAAEA 407

Query: 433 PWLQSVVL--NSKNHNIGDIIKVRITDVKISTLYGEL 467
           P +   +   + K +  G  + V + +V    L G L
Sbjct: 408 PEIDGKIFIRSQKTNRPGTFVSVHLDEVCGDDLIGSL 444


>gi|312878039|ref|ZP_07737977.1| MiaB-like tRNA modifying enzyme YliG [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311795191|gb|EFR11582.1| MiaB-like tRNA modifying enzyme YliG [Caldicellulosiruptor
           lactoaceticus 6A]
          Length = 440

 Score =  191 bits (486), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 137/453 (30%), Positives = 228/453 (50%), Gaps = 35/453 (7%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ DS  M       G+E  ++ +DAD+IV+NTC     A ++    +  +   
Sbjct: 8   SLGCNKNLVDSEIMMGACVKAGFEITSNAEDADVIVVNTCGFINDAKQESIDTILDMAEY 67

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
           KN + K      ++V GC+ Q   +EIL + P V+ ++G +   +LPE++     GK+ +
Sbjct: 68  KNKKCK-----FLIVTGCLTQRYKDEILEQMPEVDAILGVKEMLKLPEVIRGLYEGKQKI 122

Query: 151 D-----TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                 T +       R+      Y       A++ I EGC+  C++C +P  RG   SR
Sbjct: 123 KMFDDATSFVYTSSMPRVIATPRYY-------AYIKIAEGCNNRCSYCSIPLIRGKYTSR 175

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            +  +V EA +L + G  EI L  Q+   + G  L G+K     LL  L +I+ +  +R+
Sbjct: 176 PIEDIVKEAEELAEKGYQEIVLTAQDTTKY-GLDLYGKK-MLPSLLEELEKIEKIKWIRF 233

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
             S+P D+ + LI+       ++ Y  +P+Q  +DRILK MNR+ T    +++I++IR  
Sbjct: 234 LYSYPEDVDENLIEVVKSSSKIVNYFDIPIQHINDRILKLMNRKTTKEGIKRLIEKIRRS 293

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
             ++ I +  +VGFP ETD++F      +    + +  +F YS   GTP S  L QVD+ 
Sbjct: 294 FDEVVIRTTVLVGFPTETDEEFEELCSFLRWAEFDRLGAFMYSQEEGTPASQ-LPQVDDE 352

Query: 386 VKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL-VGRSPWL------ 435
           VK    E++L +Q+K+ ++Q   N   VG+  EV+IE   K+K    +GRS +       
Sbjct: 353 VKQRRYEKVLNIQRKISKKQ---NKKRVGREYEVVIE--AKDKNNFYIGRSQFEAPEVDG 407

Query: 436 QSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           + +V +      G  +KV+I D     L GE++
Sbjct: 408 KVLVFSQNKLTAGQFVKVKILDAFEYDLVGEII 440


>gi|301065032|ref|ZP_07205377.1| MiaB-like protein [delta proteobacterium NaphS2]
 gi|300440881|gb|EFK05301.1| MiaB-like protein [delta proteobacterium NaphS2]
          Length = 437

 Score =  191 bits (486), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 133/446 (29%), Positives = 216/446 (48%), Gaps = 19/446 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + F V + GC++N Y+S  ME+     G+ R      A ++V+NTC + +KAA +     
Sbjct: 2   ETFKVITLGCKVNQYESAFMEESLSKAGWHRTTDESAAHVLVVNTCVVTQKAAHQS---- 57

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-ERA 143
              R      I+E     V   GC AQA  EE L     + ++   +    +P LL E  
Sbjct: 58  ---RQAIRKAIRENPKAKVAAVGCYAQAFPEE-LETIDGIALIANNRIKAEIPRLLTELP 113

Query: 144 RFG-KRVVDTDYSVEDKFERLSIVD-GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           +F  KR     +  E  F+ L I +  G  R     A+L IQ+GC  FCT+C+VPYTRG 
Sbjct: 114 KFSQKRAFLPPFETETPFDALKICNFPGRTR-----AYLKIQDGCRSFCTYCIVPYTRGP 168

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
             S +  +V+D        G  E+ L G ++  + G  L G K   + LL  + E    +
Sbjct: 169 YRSLAPEKVLDALEGFARKGYREVVLTGIHLGKY-GVDLPG-KTDLTGLLKMVGEKSLPL 226

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R ++  P+++   LI+         P+ H+P+QSG D+ILK MNR +   ++ +II+ 
Sbjct: 227 RVRLSSMEPQELPTELIEMAASESWFCPHFHIPLQSGDDQILKKMNRHYNTKDFAKIIET 286

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I +  P  AI  D + GFPGE     +  + L++ +  +    F +SPR GTP  +    
Sbjct: 287 IHTAMPLGAIGVDVMAGFPGEDLAAHKNAVSLLEALPVSYLHVFPFSPRKGTPAWHYKNS 346

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSPWLQSVVL 440
           VD  +  ER   L+   RE+++ F   C+G   +VL+E  + ++K  + G +      V 
Sbjct: 347 VDIEIVKERARELRILGREKRMLFYKKCLGHHFDVLVEGAYARDKDLMTGAAENYLPFVF 406

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGE 466
              +   G I+++R   +  + + GE
Sbjct: 407 LRDDSLKGRIVRMRAVRISENRVLGE 432


>gi|154501155|ref|ZP_02039193.1| hypothetical protein BACCAP_04845 [Bacteroides capillosus ATCC
           29799]
 gi|150269847|gb|EDM97382.1| hypothetical protein BACCAP_04845 [Bacteroides capillosus ATCC
           29799]
          Length = 434

 Score =  191 bits (486), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 130/450 (28%), Positives = 223/450 (49%), Gaps = 33/450 (7%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R+ + + GC++N Y++  +E     +G+  V   D+AD  ++NTC +   +  K  + + 
Sbjct: 2   RYAIYTLGCKVNQYETQALETELLRRGHTLVPFEDEADAYIINTCTVTAVSDRKSRNAIR 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER--- 142
           R +       K     +V V GC AQ   +++      V++V G          +ER   
Sbjct: 62  RAK-------KRNPAAVVAVCGCYAQTAPDDVAALG--VDLVSGTGDRLGFLNEVERLSG 112

Query: 143 -----ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197
                A     ++  +      FE+L    G   R R   A L +++GC  FCT+C++PY
Sbjct: 113 LVRAEAELVPEMLVDNIMTHRSFEQLP-AGGLEGRTR---AMLKVEDGCVNFCTYCIIPY 168

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257
            RG   S +LS  V++A+KL  +G  EI L G  +++W  +  DG   +  DL+  +   
Sbjct: 169 ARGPVRSLALSAAVEQAKKLAQDGYREIVLTGIEISSWGHEFKDG--TSLIDLVEGICHA 226

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
              +R+R  +  PR +++   +    L  L P+ HL +QSG D +LK MNR++   +Y +
Sbjct: 227 VPDLRVRLGSLEPRTITEDFCRRAAALPNLCPHFHLSMQSGCDAVLKRMNRKYDTAQYYE 286

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
            +  +R      AI++D IVGFPGE++++F +T++ V+K  ++    F YS R GTP + 
Sbjct: 287 SVTLLRGFFDRPAITTDLIVGFPGESEEEFTSTLEFVEKCAFSSMHIFPYSRRTGTPAAK 346

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQS 437
           M +QV   VK ER           + ++ +  VG  + VL E+  ++ G   G +P    
Sbjct: 347 MSDQVPNAVKEERAALAGALAARLKAAYLEQWVGTSLPVLFEE--EKNGLWRGHAPNYVE 404

Query: 438 VVLNSKN-HNIGDIIKVRITDVKISTLYGE 466
           V+ + +  HN+       I DVKI+ L+G+
Sbjct: 405 VMAHGEGLHNV-------IRDVKITGLHGD 427


>gi|328953239|ref|YP_004370573.1| Ribosomal protein S12 methylthiotransferase rimO [Desulfobacca
           acetoxidans DSM 11109]
 gi|328453563|gb|AEB09392.1| Ribosomal protein S12 methylthiotransferase rimO [Desulfobacca
           acetoxidans DSM 11109]
          Length = 473

 Score =  191 bits (485), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 135/454 (29%), Positives = 222/454 (48%), Gaps = 25/454 (5%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +R +  S GC  N  D+  M  +  + GY+ V+   +ADL+++NTC     A ++    +
Sbjct: 13  RRLYPVSLGCAKNRVDTEIMLALLEAAGYQVVSRPQEADLMLVNTCGFITPACQEAIDTI 72

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             +   K  + ++     +VV GC+ Q   +E+L   P V++ +G   + R+ E++    
Sbjct: 73  LELAAYKQDQPEKQ----LVVTGCLVQRYQQELLDLLPEVDIFLGVNDFPRIVEVIR--- 125

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
              R        +D ++   ++   +      +A+L I EGC   CT+C +P  RG   S
Sbjct: 126 --ARSTTGRLHCQDGWQDYELIWPRHLTTPFYSAYLKIAEGCSHHCTYCTIPQIRGPYRS 183

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRL 263
           R LS +V EA++L   GV E+ L+ Q+  A+   G+D G +    +LL  L+ I  L  +
Sbjct: 184 RPLSTLVAEAKQLAAQGVRELNLVAQDTTAY---GVDQGGRLLLPELLRQLAGIAALQWI 240

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R    HP  ++  L++   D   + PY  LPVQ  SDR+L  M R +   +  + + RIR
Sbjct: 241 RLLYGHPARVTPELLRVMADHPQICPYFDLPVQHVSDRLLHRMGRGYRQKDLWETLARIR 300

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV- 382
           ++ P   + +  IVGFPGE + DF     +  ++ +     F Y P  GTP + M E V 
Sbjct: 301 TIIPAATLRTSVIVGFPGEREQDFAELCQVTAQMEFDHLGVFAYQPEEGTPAAKMAESVT 360

Query: 383 --DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-----KGKLVGRSPWL 435
             + N +A RL  LQ +L  +++       G I  VLIE H +E     +G+L G++P  
Sbjct: 361 PREANRRARRLRSLQARLNRKKLR---RLKGTIQPVLIEGHSEETELLLRGRLAGQAPEA 417

Query: 436 Q-SVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
              V +N+    +G +  VRIT      L GE+V
Sbjct: 418 DGQVYINAGWAELGRLTPVRITKTYTYDLLGEVV 451


>gi|313904016|ref|ZP_07837396.1| MiaB-like tRNA modifying enzyme YliG [Eubacterium cellulosolvens 6]
 gi|313471165|gb|EFR66487.1| MiaB-like tRNA modifying enzyme YliG [Eubacterium cellulosolvens 6]
          Length = 453

 Score =  191 bits (485), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 133/452 (29%), Positives = 226/452 (50%), Gaps = 32/452 (7%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ D+  M      +GYE  +   +A++I++NTC   + A E+  + +     L
Sbjct: 7   SLGCDKNLVDAEHMLGSLAGRGYEMTDDETEAEIIIVNTCCFIDSAKEESVNTI-----L 61

Query: 91  KNSRIK-EGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149
             +R K EG    ++V GCVA+   EE+L   P V+ +VG  +Y ++ E + +   G R 
Sbjct: 62  DMARYKTEGKCHTLIVTGCVAERYKEEVLEEIPEVDAIVGTNSYNKIEEAILKVGEGARP 121

Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTA----FLTIQEGCDKFCTFCVVPYTRGIEISR 205
                      E L+ +  G  R+   T     +L I EGCD+ CT+C +P  RG   S 
Sbjct: 122 A--------ILEPLNYIPKGEKRRVMATGGFFEYLKIAEGCDRHCTYCAIPDMRGPYRSV 173

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            +  +++EAR L  +GV E+ L+ Q    + G  L  EK     LL  L +I+ +  +R 
Sbjct: 174 PMEDLLEEARGLAADGVKELILVAQETTLY-GTDLYNEK-RLHILLKELCKIEDIHWIRV 231

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
              +P ++   LI+   +   +  Y+ +P+Q  +D ILK M R+ +  +  ++++ +R  
Sbjct: 232 LYCYPEEIYPELIQTMKEEPKICHYMDIPIQHANDEILKKMGRKTSRADLVRVVNTLRQE 291

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            PDIAI +  I GFPGET+  F    D + ++ + +   F YS   GT  + M  Q+DE 
Sbjct: 292 IPDIAIRTTLITGFPGETEAQFEDVCDFIREMKFDRLGVFTYSCEEGTAAARMDGQIDEE 351

Query: 386 VKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSV 438
           V  +R   L+ +Q+++  ++     + +G  +EV IE +  ++   VGR+    P +  +
Sbjct: 352 VMKDRQDALMTIQQEISSER---GQSLIGSTLEVFIEGYMSQENAYVGRTYADIPNVDGM 408

Query: 439 VL--NSKNHNIGDIIKVRITDVKISTLYGELV 468
           +    S+  N GD +KV +T      L G+LV
Sbjct: 409 IFIQTSETLNSGDFVKVLVTAAMEYDLIGQLV 440


>gi|163788919|ref|ZP_02183364.1| possible 2-methylthioadenine synthetase [Flavobacteriales bacterium
           ALC-1]
 gi|159876156|gb|EDP70215.1| possible 2-methylthioadenine synthetase [Flavobacteriales bacterium
           ALC-1]
          Length = 442

 Score =  191 bits (485), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 128/427 (29%), Positives = 215/427 (50%), Gaps = 39/427 (9%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N  ++  +   F  +G+ RV+  ++AD+ V+NTC + E A +       R + +
Sbjct: 10  TLGCKLNFSETSTIARSFKDEGFARVDFKENADIYVINTCSVTENADK-------RFKTI 62

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE---RARFGK 147
                K   D  V   GC AQ + EE+   +  V++V+G    +++ + L    +  FG+
Sbjct: 63  VKQAQKVNPDAFVAAIGCYAQLKPEELADVNG-VDLVLGATEKFKITDYLNDLTKNDFGE 121

Query: 148 ----RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
                + D D+ V           G Y+      AFL +Q+GCD  CT+C +P  RGI  
Sbjct: 122 VHSCEIEDADFYV-----------GSYSIGDRTRAFLKVQDGCDYKCTYCTIPLARGISR 170

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK---CTFSDLLYSLSEIKGL 260
           S +++ V++ A+++ + G+ EI L G N+  + GKG  G K    TF DL+  L +++G+
Sbjct: 171 SDTMTNVLNNAKEISEQGIKEIVLTGVNIGDY-GKGEFGNKKHEHTFLDLVTELDKVEGI 229

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            RLR ++  P  + +  I         +P+ H+P+QSGS+ ILK M RR+    Y   + 
Sbjct: 230 ERLRISSIEPNLLKNETIDLVSKSRAFVPHFHVPLQSGSNDILKKMKRRYMKELYVDRVS 289

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           +I+ V P   I  D IVGFPGETD+ F  T + + ++  +    F YS R  T  + M  
Sbjct: 290 KIKEVMPHACIGVDVIVGFPGETDEHFLETYNFLKELDISYLHVFTYSERDNTEAAEMDG 349

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG--------RS 432
            V +NV+A+R   L+    +++ +F +  +     VL E   KE G + G        ++
Sbjct: 350 VVSKNVRAKRSKMLRGLSAKKRRAFYEKQLNTDRTVLFEGENKE-GYIHGFTENYVKVKA 408

Query: 433 PWLQSVV 439
           PW   +V
Sbjct: 409 PWNPELV 415


>gi|15643593|ref|NP_228639.1| hypothetical protein TM0830 [Thermotoga maritima MSB8]
 gi|14916854|sp|Q9WZT7|Y830_THEMA RecName: Full=Putative methylthiotransferase TM_0830
 gi|4981362|gb|AAD35912.1|AE001750_6 conserved hypothetical protein [Thermotoga maritima MSB8]
          Length = 434

 Score =  191 bits (484), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 119/393 (30%), Positives = 221/393 (56%), Gaps = 23/393 (5%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           ++++GC++N Y+S  M +     GY  V    +A   ++N+C + ++  +KV   +  IR
Sbjct: 6   IETFGCKVNQYESEYMAEQLEKAGYV-VLPDGNAAYYIVNSCAVTKEVEKKVKRLIKSIR 64

Query: 89  NL-KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147
           N  KN++I        ++ GC AQ   +E   ++  V++V+G      + + +     GK
Sbjct: 65  NRNKNAKI--------ILTGCFAQLSPDEA--KNLPVDMVLGIDEKKHIVDHINSLN-GK 113

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRS 206
           + V         +E+   V G +  +    +++ +++GCD  CT+C +   RG  I S+ 
Sbjct: 114 QQVVVSEPGRPVYEK---VKGSFEDR--TRSYIKVEDGCDNTCTYCAIRLARGTRIRSKP 168

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
           L    +E  +++  G  EI + G N+  + GK +     + ++LL  + ++ G  R+R +
Sbjct: 169 LEIFKEEFAEMVMKGYKEIVITGVNLGKY-GKDMGS---SLAELLKVIEKVPGDYRVRLS 224

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
           + +  D++D ++KA      L P+LH+ VQSGSD +LK M R++   ++ +++D++RS+ 
Sbjct: 225 SINVEDVNDEIVKAFKRNPRLCPHLHISVQSGSDDVLKRMGRKYKISDFMRVVDKLRSID 284

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           PD +I++D IVGFPGETD DF+ T++LV+K+ +++   F++SPR GTP S M   V E+ 
Sbjct: 285 PDFSITTDIIVGFPGETDADFQRTLELVEKVEFSRVHIFRFSPRPGTPASRMEGGVPESK 344

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419
           K ERL  L++K ++  + +    +G+  +VL E
Sbjct: 345 KKERLDVLKEKAKDVSIRYRKRIIGKERKVLAE 377


>gi|160880431|ref|YP_001559399.1| MiaB-like tRNA modifying enzyme [Clostridium phytofermentans ISDg]
 gi|160429097|gb|ABX42660.1| MiaB-like tRNA modifying enzyme [Clostridium phytofermentans ISDg]
          Length = 466

 Score =  191 bits (484), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 128/441 (29%), Positives = 227/441 (51%), Gaps = 30/441 (6%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  M+ +F   G   V+  + +D+ V+NTC +   A  K    L + +  
Sbjct: 27  TLGCKVNSYETEAMQQLFLDAGATIVDFEELSDIYVVNTCTVTNIADRKSRQMLHKAK-- 84

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER---ARFGK 147
                K   + +V+  GC  QA  E +L     V++V+G      +  L++     +   
Sbjct: 85  -----KNNPNSVVIAVGCYVQAAKEALLE-DDTVDLVIGNNKKNEIVSLVDEYYDNQSNY 138

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
            V+D D   E  +E L+I       +    A++ IQ+GC++FC++C++PY RG   SRS 
Sbjct: 139 AVIDIDNDFE--YEELAIAAVTEKTR----AYIKIQDGCNQFCSYCIIPYARGRIRSRSE 192

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK----------CTFSDLLYSLSEI 257
            ++  E  +L++NG  EI L G +++++  + L  ++               L+ SLSEI
Sbjct: 193 EEIKKEVMRLVENGYQEIVLTGIHLSSYGLETLSVKEQAALLPENGISPLMTLILSLSEI 252

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
           +GL R+R ++  PR +++  +K       L P+ HL +QSG    L  MNR++T  +Y +
Sbjct: 253 EGLNRIRLSSLEPRIITEEFVKTLAR-SKLCPHFHLSLQSGCKETLVRMNRKYTPDDYYK 311

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
             + IR+   + AI++D IVGFPGET+++F  T   ++K+ ++Q   FKYS R GT    
Sbjct: 312 RCEIIRTYYENPAITTDVIVGFPGETEEEFEDTKAFLEKVQFSQMHIFKYSKRKGTKAEA 371

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG--KEKGKLVGRSPWL 435
           M  QV E +K++R   L    ++ +  + D+ +G    VL E+    ++   ++G +   
Sbjct: 372 MPNQVPEQIKSKRSENLFDSEKKMRAKYLDSFIGINEIVLTEEETMIEDTLYMIGHTTRY 431

Query: 436 QSVVLNSKNHNIGDIIKVRIT 456
             V +   N    +++ VRIT
Sbjct: 432 VKVAIPVSNLKSNELVNVRIT 452


>gi|291166092|gb|EFE28138.1| 2-methylthioadenine synthetase [Filifactor alocis ATCC 35896]
          Length = 445

 Score =  191 bits (484), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 109/369 (29%), Positives = 198/369 (53%), Gaps = 18/369 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + F+ + GC  N  DS  M  +  S+G  +   +++A++ ++NTC   + A E+    + 
Sbjct: 7   KVFITTMGCAKNWVDSENMLGIMESEGLTQTLDVEEAEIGIVNTCGFIDSAKEESIQEI- 65

Query: 86  RIRNLKNSRIKEGGDLL-VVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
               L  ++ KE G+L  ++V GC+AQ   +E++   P ++ ++G  ++ ++   ++   
Sbjct: 66  ----LSLAQYKEIGNLKKLIVTGCLAQRYSKELMEEIPEIDFILGTTSFPQIMSAIKMTE 121

Query: 145 FGKR---VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
            GKR   + D + ++ +  ER  + +  Y       A+L I EGCD  CT+C++P  RG 
Sbjct: 122 LGKRDSLLEDINLNLSENMERTQLTEEYY-------AYLKIAEGCDNLCTYCIIPKLRGK 174

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
             SR    +V+E++KL ++GV E+ ++ Q+   + G  L G+K +  +LL  L  +KGL 
Sbjct: 175 YRSRQKEDIVEESKKLAESGVKELIVIAQDTTKY-GIDLYGKK-SLGELLKELDNVKGLH 232

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
            +R   S+P D+ D  I A  +   ++PY  +P+Q  SD +LK MNR  +  E    +++
Sbjct: 233 WIRVLYSYPEDIDDEFILAVKNSKKIIPYFDMPIQHCSDTVLKRMNRHTSKQELYDKVNQ 292

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           IR+  P+  + +  I GFPGET ++F      V ++ + +   F +S   GTP + M +Q
Sbjct: 293 IRTQIPNAVLRTTLITGFPGETREEFEELKQFVQEVKFDRLGVFAFSQEEGTPAAKMKDQ 352

Query: 382 VDENVKAER 390
           ++E  K  R
Sbjct: 353 IEEQEKENR 361


>gi|221194798|ref|ZP_03567855.1| conserved hypothetical protein [Atopobium rimae ATCC 49626]
 gi|221185702|gb|EEE18092.1| conserved hypothetical protein [Atopobium rimae ATCC 49626]
          Length = 460

 Score =  191 bits (484), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 132/471 (28%), Positives = 220/471 (46%), Gaps = 31/471 (6%)

Query: 13  MVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHI 72
           MVS      I  +     + GC  N  D+ RM  + F+QG+  V++ ++AD++++NTC  
Sbjct: 1   MVSPSNTPTIDKKNILFVTLGCAKNEVDTDRMRALLFAQGFSEVDTPNEADIVLINTCSF 60

Query: 73  REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT 132
              A E+      +I    +  ++    L +V+ GCV    G ++    P V   V    
Sbjct: 61  LASATEESIETTLQIAEGASHGVR---SLPIVMCGCVPSRYGSKLPEELPEVAAFVRADE 117

Query: 133 YYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTF 192
              + E          VV     +E   + +    G      G +A++ I +GCD+FC F
Sbjct: 118 EDGIVE----------VVSEVLGIERTPQSVIAAHGMLRTVEGASAYVKISDGCDRFCAF 167

Query: 193 CVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR---GKGLDGEKCTFSD 249
           C +PY RG   SR   +++ E   L++ GV EI L+GQ+   W     +   GE  T + 
Sbjct: 168 CAIPYIRGHYQSRPADEILSEVSSLMEGGVREIILIGQDTGIWGNDIAETNTGEVPTLAW 227

Query: 250 LLYSLSEI----KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
           L+  ++++     G VR+ Y    P  M+D LI    D    +PY+ +P+Q  S+R+L  
Sbjct: 228 LMRQVAQVVRPYNGWVRVLYL--QPEGMTDELISTIRDTPECLPYIDIPIQHCSERVLAR 285

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           M R  +A E R + DR+R   P + + +  + GFPGET+++     D + +  +     F
Sbjct: 286 MGRSGSAPELRSLFDRLRREIPGMVLRTTGMCGFPGETEEESDELYDFIQEQEFDYTSVF 345

Query: 366 KYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE--KHGK 423
            YSP  GT G++M  QV + +K ER   L   + E   +     VG+  EV+I+  +   
Sbjct: 346 TYSPEEGTAGASMPNQVPDEIKMERTQRLIDLVEELGFAGTARHVGERCEVIIDGIEDTD 405

Query: 424 EKGKLVGRSPWLQSVVLNSKNH------NIGDIIKVRITDVKISTLYGELV 468
           E  +L+G + W Q+   +   H       +GDI+   + D     + GE+V
Sbjct: 406 EGFELIGHA-WFQAPDCDGAVHIANGEARVGDIVLCDLVDSFCYEIIGEIV 455


>gi|307130740|ref|YP_003882756.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Dickeya dadantii
           3937]
 gi|306528269|gb|ADM98199.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Dickeya dadantii
           3937]
          Length = 467

 Score =  191 bits (484), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 140/453 (30%), Positives = 222/453 (49%), Gaps = 40/453 (8%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ DS R+     ++GY+ V S +DADL+++NTC   + A ++    +G   N 
Sbjct: 40  SLGCPKNLVDSERILTELRTEGYQVVPSYNDADLVIVNTCGFIDSAVQESLEAIGEALN- 98

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
                 E G   V+V GC+  A+  +I    P V  + GP +Y ++   +          
Sbjct: 99  ------ENGK--VIVTGCLG-AKDNQIREVHPNVLEITGPHSYEQVLNHVHHY------- 142

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
                  D F  L    G     R   A+L I EGCD  CTFC++P  RG   SR +  V
Sbjct: 143 -VPKPEHDPFTSLIPAQGVKLTPRHY-AYLKISEGCDHRCTFCIIPSMRGDLDSRPIGSV 200

Query: 211 VDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYSLSEIKG 259
           +DEA++L D GV E+ ++ Q+ +A           W G+ +   K +   L   LS +  
Sbjct: 201 LDEAKRLADAGVKELLVISQDTSAYGADVKNRTGFWNGQPV---KTSMVSLCEQLSTLGL 257

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
            VRL Y   +P       + A G +   +PYL +P+Q  S +ILK M R        + I
Sbjct: 258 WVRLHYVYPYPHVDDVIPLMAAGKV---LPYLDIPLQHASPKILKLMKRPGAVERTLERI 314

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            R R + P++ + S FIVGFPGET++DF+  +D + +    +   F+YSP  G   +++ 
Sbjct: 315 KRWREICPELTLRSTFIVGFPGETEEDFQMLLDFLQEAQLDRVGCFRYSPVEGAAANDLP 374

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPWLQ- 436
           +QV E VK ER     +  ++       A VG+ ++VLI++  +E   G+ +  +P +  
Sbjct: 375 DQVPEEVKEERYHRFMQIQQQISSQRLQAKVGRELKVLIDEVDEEGAIGRSMADAPEIDG 434

Query: 437 SVVLNSKNH-NIGDIIKVRITDVKISTLYGELV 468
           +V LN +N   +GD++ V+I       L+G LV
Sbjct: 435 AVYLNGENRVKVGDLVTVKIEHADEYDLWGSLV 467


>gi|311695350|gb|ADP98223.1| MiaB-like tRNA modifying enzyme YliG [marine bacterium HP15]
          Length = 448

 Score =  191 bits (484), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 143/455 (31%), Positives = 222/455 (48%), Gaps = 43/455 (9%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC   + DS R+       GY+ V S DDAD++V+NTC   + A ++    +G     
Sbjct: 20  SLGCPKALVDSERILTQLRLDGYDVVPSYDDADIVVVNTCGFIDAAKQESLDAIGEA--- 76

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               I E G   V+V GC+   E ++I    P V  V GP  Y  +   + +    K+  
Sbjct: 77  ----ISENGK--VIVTGCMG-VEADKIRDTHPGVLAVSGPHAYEEVVGAVHQFVPQKKQ- 128

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
                  D F  L    G     R   A+L I EGC+  CTFC++P  RG  +SR +  V
Sbjct: 129 ------HDPFTDLVPPQGIKLTPRHY-AYLKISEGCNHRCTFCIIPSMRGDLVSRPIGDV 181

Query: 211 VDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYSLSEIKG 259
           +DEA++L+D GV E+ ++ Q+ +A           W+G+ L   K     L  +L E+  
Sbjct: 182 MDEAQRLVDAGVKELLVISQDTSAYGVDTKYRTGFWQGRPL---KTKMQSLCEALGEMGV 238

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
            VRL Y   +P       + A G +   +PYL +P Q  S ++LK+M R     +  + I
Sbjct: 239 WVRLHYVYPYPHVDDIIPLMAEGKI---LPYLDIPFQHASPKVLKAMKRPAHDSKTLERI 295

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            + R + P++ I S FIVGFPGET++DF+  +D +D+    +  +FKYSP  G   + + 
Sbjct: 296 RKWREICPELTIRSTFIVGFPGETEEDFQYLLDWLDEAQLDRVGAFKYSPVEGAKANELE 355

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWL 435
             V E VK ERL    +K  +   +   A +GQ I+VLI++  +E    +GRS    P +
Sbjct: 356 GAVSEEVKEERLARFMEKQAKISAARLQAKIGQTIDVLIDEVDEEGA--IGRSKADAPEI 413

Query: 436 QSVV-LNSKNHNI-GDIIKVRITDVKISTLYGELV 468
             +V LN +   + G+I++  +       L+  LV
Sbjct: 414 DGMVYLNDETDLVPGEIVQAVVEHADEHDLWARLV 448


>gi|148241399|ref|YP_001226556.1| 2-methylthioadenine synthetase [Synechococcus sp. RCC307]
 gi|238066614|sp|A5GQP4|RIMO_SYNR3 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|147849709|emb|CAK27203.1| 2-methylthioadenine synthetase [Synechococcus sp. RCC307]
          Length = 487

 Score =  191 bits (484), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 136/452 (30%), Positives = 223/452 (49%), Gaps = 38/452 (8%)

Query: 33  GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCH-IREKAAEKVYSFLGRIRNLK 91
           GC+ N  D+  M  +    GY       DA ++V+NTC  I++  AE V + +      K
Sbjct: 46  GCEKNRVDTEHMLGLLAQAGYGVSADEADAQVVVVNTCSFIQDARAESVRTLVDLAEQGK 105

Query: 92  NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV-- 149
                      +V+AGC+AQ   EE+L   P    +VG   Y  + E+LE+   G+RV  
Sbjct: 106 Q----------IVIAGCLAQHFQEELLESLPEARAIVGTGDYQHIVEVLEQVEAGERVNR 155

Query: 150 ---VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
              V T +  ++   R       Y       A+L + EGCD  C FC++P  RG + SR 
Sbjct: 156 VSQVPT-FVADENLPR-------YRTTSEAVAYLKVAEGCDYRCAFCIIPKLRGDQRSRP 207

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK-GLVRLRY 265
           +  +V EA++L   GV E+ L+ Q    + G  L G K   ++LL +L E++   +R+ Y
Sbjct: 208 IESIVAEAQQLAAQGVKELILISQITTNY-GLDLYG-KPQLAELLRALGEVEIPWIRVHY 265

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
             ++P  ++  ++ A+ ++  ++PYL LP+Q     +L++MNR        Q++ RIR  
Sbjct: 266 --AYPTGLTPEVLAAYREVPNVLPYLDLPLQHSHPEVLRAMNRPWQEGVNGQLLQRIREQ 323

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            PD  + + FIVG+PGET++ F   ++ V +  +     F +SP  GTP +++   V   
Sbjct: 324 LPDAVLRTTFIVGYPGETEEQFEHLLEFVQEQRFDHVGVFCFSPEDGTPAADLPNAVPAE 383

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVV-- 439
           V   R   L +  +      N A VG+I++VL+E+     G+L+GR    +P +   V  
Sbjct: 384 VAEARRGRLMEAQQAISAERNGAWVGRIVDVLVEQENPSSGELIGRCLRFAPDVDGEVRI 443

Query: 440 ---LNSKNHNIGDIIKVRITDVKISTLYGELV 468
               +    + G ++ VRIT   I  L GE+V
Sbjct: 444 RAGSHGAAASAGTMVPVRITAADIYDLEGEVV 475


>gi|291543604|emb|CBL16713.1| MiaB-like tRNA modifying enzyme [Ruminococcus sp. 18P13]
          Length = 440

 Score =  190 bits (483), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 135/447 (30%), Positives = 225/447 (50%), Gaps = 30/447 (6%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S+GC++N Y++  +  M   +G + V   +DADLI++N+C +   +  KV   L  +R  
Sbjct: 7   SFGCKVNQYETNALRGMLSREGIQPVEQPEDADLILVNSCTVTASSDRKVRHALRSLR-- 64

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT----YYRLPELLERARFG 146
             SR        +V+ GC+ QA   +  +  P  +++ G +       R+ +L+E A   
Sbjct: 65  --SRCPAAK---IVLTGCLPQAH-PDAAQLCPEADLITGTKDRAALIQRIRQLMESAVPW 118

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
             V  T Y+  + +E L   +   +R R   AF+ IQ+GC++FC++C++PY RG   S+ 
Sbjct: 119 DGV--TPYTPGEGYELLPPAENA-DRTR---AFIKIQDGCNQFCSYCIIPYARGRCRSKP 172

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
              +  EA ++   G  E  L+G N+ A+ G    G+     D +     + G+ R+R  
Sbjct: 173 REALAQEAAQMAQAGCREAVLIGINL-AFYGMEWQGD---LGDAVDICCAVPGIDRVRLG 228

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
           +  P  +SD L++         P  HL +QSG DR L++MNR +T  EY  +  RIR + 
Sbjct: 229 SLEPEKLSDDLLRRLAAHPQFCPQFHLSLQSGCDRTLRAMNRHYTTAEYADLAARIRRIF 288

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           PD A+++D +VGFPGET+ DF  +++ V ++G+A+   F YSPR GT  + M EQ+    
Sbjct: 289 PDAALTTDVMVGFPGETEADFACSLEFVREMGFAKVHVFPYSPREGTVAARMPEQIPSPE 348

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHN 446
           K  R   + +     + +F  + VG+++ VL E+   +     G +P    V +++K   
Sbjct: 349 KRRRAALMGETAAACRRAFLRSQVGKVMPVLFERSA-DPAWHRGYTPNYTPVKISAKKGE 407

Query: 447 -------IGDIIKVRITDVKISTLYGE 466
                     IIK    D  I TL  E
Sbjct: 408 KSLRKSVFRVIIKSSEPDCCIGTLLPE 434


>gi|290968719|ref|ZP_06560257.1| ribosomal protein S12 methylthiotransferase RimO [Megasphaera
           genomosp. type_1 str. 28L]
 gi|290781372|gb|EFD93962.1| ribosomal protein S12 methylthiotransferase RimO [Megasphaera
           genomosp. type_1 str. 28L]
          Length = 443

 Score =  190 bits (483), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 138/452 (30%), Positives = 230/452 (50%), Gaps = 32/452 (7%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA-EKVYSFLGRIRN 89
           S GC  N+ D+  M  +   +       +  AD+I++NTC   EKA  E +++ L     
Sbjct: 8   SLGCSKNLIDTEVMLGILREKHMTITEDLAQADIIIVNTCTFIEKAKRESIHTIL----- 62

Query: 90  LKNSRIKEGGDL-LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
            + ++ KE G   +++V GC++Q   EE+L+  P ++ ++G  ++ R+ E +   R GKR
Sbjct: 63  -QAAQYKEQGSCKMLLVTGCLSQQYKEELLQEMPEIDALLGTGSWDRVWEAITTVRQGKR 121

Query: 149 V--VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           V  +D    + D+  R       Y      +A++ I EGC+  CTFC++P  RG   SRS
Sbjct: 122 VCFMDNVSHLYDQHTRRLRTTPSY------SAYVKIGEGCNNGCTFCIIPKVRGTLYSRS 175

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
           +  +V+E  +L   GV EI L+ Q+  ++ G  L G +     LL  L +++G+  +R  
Sbjct: 176 MDSIVEEVTQLAHEGVKEINLIAQDTTSY-GVDLAG-RSLLPALLRRLVKVEGIAWIRLF 233

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
             +P   SD L+      D + PY+ LP+Q  S  +L+ MNR+ +  + R++++++    
Sbjct: 234 YLYPHFFSDELMNLIIQEDKICPYVDLPLQHISQSVLQRMNRKDSEADVRRLVEKLCRGE 293

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
             + + S FIVGFPGET+++F    + +    +     F YS   GTP ++M  QV E V
Sbjct: 294 RKLTLRSTFIVGFPGETEEEFNTLAEFLKTSAFDDVGVFTYSQEEGTPAASMKAQVPEAV 353

Query: 387 KAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG--KLVGR----SPWLQS 437
           K ER   L+ +Q ++ E +   N A  G    +L+EK   E G  + VGR    +P +  
Sbjct: 354 KEERYHTLMAIQAQVSEVR---NRALEGTEHVMLVEKIETENGVRQAVGRIEAQAPEVDG 410

Query: 438 VVL--NSKNHNIGDIIKVRITDVKISTLYGEL 467
           V    N+     GD+++VRI       L  EL
Sbjct: 411 VTYLENATTVMPGDMVRVRIVQGFAYDLVAEL 442


>gi|320173893|gb|EFW49071.1| hypothetical protein SDB_03579 [Shigella dysenteriae CDC 74-1112]
          Length = 441

 Score =  190 bits (483), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 146/462 (31%), Positives = 237/462 (51%), Gaps = 45/462 (9%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  FV S GC  N+ DS R+     ++GY+ V S DDAD++++NTC   + A ++    
Sbjct: 8   PKIGFV-SLGCPKNLVDSERILTELRTEGYDVVPSYDDADMVIVNTCGFIDSAVQESLEA 66

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G   N       E G   V+V GC+   E ++I    P V  + GP +Y ++ E +   
Sbjct: 67  IGEALN-------ENGK--VIVTGCLGAKE-DQIREVHPKVLEITGPHSYEQVLEHVHH- 115

Query: 144 RFGKRVVDTDYSVEDKFER-LSIV-DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
                     Y  + K    LS+V + G        A+L I EGC+  CTFC++P  RG 
Sbjct: 116 ----------YVPKPKHNPFLSLVPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGD 165

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYS 253
            +SR + +V+ EA++L+D GV EI ++ Q+ +A+      R    +GE  K +   L   
Sbjct: 166 LVSRPIGEVLSEAKRLVDAGVKEILVISQDTSAYGVDVKHRTGFHNGEPVKTSMVSLCEQ 225

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
           LS++    RL Y   +P       + A G +   +PYL +P+Q  S RILK M R  +  
Sbjct: 226 LSKLGIWTRLHYVYPYPHVDDVIPLMAEGKI---LPYLDIPLQHASPRILKLMKRPGSVD 282

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
                I + R + P++ + S FIVGFPGET++DF+  +D + +    +   FKYSP  G 
Sbjct: 283 RQLARIKQWREICPELTLRSTFIVGFPGETEEDFQMLLDFLKEARLDRVGCFKYSPVEGA 342

Query: 374 PGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKL 428
             + + +QV E VK E   R + LQ+++  +++      VG+ I V+I++  +E   G+ 
Sbjct: 343 DANALPDQVPEEVKEERWNRFMQLQQQISAERLQEK---VGREILVIIDEVDEEGAIGRS 399

Query: 429 VGRSPWLQ-SVVLNSK-NHNIGDIIKVRITDVKISTLYGELV 468
           +  +P +  +V LN + N N GDI++V++       L+G  V
Sbjct: 400 MADAPEIDGAVYLNGETNVNPGDILRVKVEHADEYDLWGSRV 441


>gi|312134799|ref|YP_004002137.1| miab-like tRNA modifying enzyme ylig [Caldicellulosiruptor
           owensensis OL]
 gi|311774850|gb|ADQ04337.1| MiaB-like tRNA modifying enzyme YliG [Caldicellulosiruptor
           owensensis OL]
          Length = 440

 Score =  190 bits (483), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 133/453 (29%), Positives = 230/453 (50%), Gaps = 35/453 (7%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ DS  M       G+E  ++  DAD+IV+NTC     A ++    +  +   
Sbjct: 8   SLGCNKNLVDSEIMMGACVKAGFEITSNAKDADVIVVNTCGFINDAKQESIDTILDMAEY 67

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
           KN + K      ++V GC+ Q   +EIL + P ++ ++G +   +LPE+++    GK+ +
Sbjct: 68  KNKKCK-----FLIVTGCLTQRYKDEILEQMPEIDAILGVKEMLKLPEVIKDLYEGKQKI 122

Query: 151 D-----TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                 + +       R+      Y       A++ I EGC+  C++C +P+ RG   SR
Sbjct: 123 KVFNDASSFVYSSSMPRVIATPSYY-------AYIKIAEGCNNRCSYCSIPFIRGKYTSR 175

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            +  +V EA++L + G  EI L  Q+   + G  L G+K     LL  L  I+ +  +R+
Sbjct: 176 PIEDIVKEAKELAEKGYQEIILTAQDTTKY-GIDLYGKK-MLPALLEELEGIEKIKWIRF 233

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
             S+P D+ + LI        ++ Y  +P+Q  +DRILK MNR+ T    +++I++IR  
Sbjct: 234 LYSYPEDLDENLIDVVKSSSKIVNYFDIPIQHINDRILKLMNRKTTKEGIKRLIEKIRRS 293

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
             ++ I +  +VGFP ETD++F      +    + +  +F YS   GTP    L QVDE+
Sbjct: 294 FDEVVIRTTVLVGFPTETDEEFEELCSFLKWAEFDRLGAFMYSQEEGTPAFK-LPQVDED 352

Query: 386 VKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL-VGRSPWL------ 435
           +K    E++L +Q+K+ ++Q   N   VG+  EV+IE   K++    +GRS +       
Sbjct: 353 IKQRRYEKVLNIQRKISKKQ---NRKRVGKEYEVVIE--AKDRNNFYIGRSQFEAPEVDG 407

Query: 436 QSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           + +V + K    G+ +KV++ D     L GE++
Sbjct: 408 KVLVFSQKKLIAGEFVKVKVLDAFEYDLVGEII 440


>gi|170072335|ref|XP_001870154.1| CDK5 regulatory subunit-associated protein 1 [Culex
           quinquefasciatus]
 gi|167868595|gb|EDS31978.1| CDK5 regulatory subunit-associated protein 1 [Culex
           quinquefasciatus]
          Length = 446

 Score =  190 bits (483), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 128/420 (30%), Positives = 205/420 (48%), Gaps = 69/420 (16%)

Query: 36  MNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRI 95
           MN  D+  +  +     Y+R  S+ DAD+++L TC IR+ A   V++ L  +R +K  R 
Sbjct: 1   MNTNDTEIVWSILKGHEYQRTGSIKDADVVLLMTCAIRDGAESTVWNRLKHVRLMKERRE 60

Query: 96  KEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYS 155
            EG                                           RA  G++ ++   S
Sbjct: 61  SEG-------------------------------------------RALQGQKAINVLLS 77

Query: 156 VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEAR 215
           +++ +  +  V    +RK   TA+++I  GCD  C++C+VP+TRG E SR ++ + +EA 
Sbjct: 78  LDETYADVMPVK--LDRK-SRTAYVSIMRGCDNMCSYCIVPFTRGKERSRPVASIREEAL 134

Query: 216 KLIDNGVCEITLLGQNVNAWR--GKGLDGEKCT-------------------FSDLLYSL 254
            L   G+ EITLLGQNVN++R      DGEK                     F++LL  L
Sbjct: 135 HLEAKGIKEITLLGQNVNSYRDLSTESDGEKQASVLAPGFKTVYKTKVGGRRFAELLTEL 194

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
           +E    +R+R+T+ HP+D    +++       +   LHLP QSGS  +L+ M R ++   
Sbjct: 195 AETVPEMRIRFTSPHPKDFPREVLETIARYPNICKNLHLPAQSGSSTVLERMRRGYSREA 254

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
           Y  ++D +R++ P++ +SSDFI GF GE+D +F  T+ L++++GY  AF F YS R  T 
Sbjct: 255 YLNLVDEVRTIVPNVTLSSDFICGFCGESDAEFTETLSLIEQVGYHTAFLFAYSMREKTT 314

Query: 375 GSNML-EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRS 432
                 + V ++VK +RL  + K  R      N   VG+   +L+E   K     L GR+
Sbjct: 315 AHRRFSDDVPDSVKQQRLRDMIKVFRVGAERLNAQFVGREELILVEGASKRSPNDLAGRN 374


>gi|254501602|ref|ZP_05113753.1| MiaB-like tRNA modifying enzyme [Labrenzia alexandrii DFL-11]
 gi|222437673|gb|EEE44352.1| MiaB-like tRNA modifying enzyme [Labrenzia alexandrii DFL-11]
          Length = 422

 Score =  190 bits (483), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 138/443 (31%), Positives = 217/443 (48%), Gaps = 36/443 (8%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V ++GC++N Y+S  M+    + G +        D I++NTC +  +A  +    + + +
Sbjct: 5   VVTFGCRLNSYESEVMKREAEAAGLK--------DAILINTCAVTNEAVRQARQAVRKAK 56

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG-- 146
                  ++  D  V+V GC AQ E +        V++V+G           + A FG  
Sbjct: 57  -------RDNPDAKVIVTGCAAQTETDTFSEMDE-VDLVLGNTEKLERKSYADVAAFGIS 108

Query: 147 ---KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
              K  V+   SVE+    L  +DG   R R   AF+ +Q GCD  CTFC++PY RG   
Sbjct: 109 ETEKVRVNDIMSVEETAGHL--IDGLTGRAR---AFVQVQNGCDHRCTFCIIPYGRGNSR 163

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           S  +  V+D+ ++L+DNG  EI L G ++ ++ G  L GE    +     L  +  L RL
Sbjct: 164 SVPMGVVIDQIKRLVDNGYNEIVLTGVDITSY-GADLPGEPKLGTLTAKILKMVPDLKRL 222

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R ++    +  + L++   D   LMP+ HL +Q+G D ILK M RRH   +  +  + +R
Sbjct: 223 RLSSIDSIEADEDLMQVIADDHRLMPHFHLSLQAGDDMILKRMKRRHLRGDTIKFCEDVR 282

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
            +RPD+   +D I GFP ET++ F  ++ +VD+ G      F +SPR GTP + M  Q+D
Sbjct: 283 KMRPDVVFGADIIAGFPTETEEMFLNSLKIVDECGLTHLHVFPFSPRPGTPAARM-PQLD 341

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
            ++  ER   L++K  +         VG++  VLIEK G      +GR+     V L   
Sbjct: 342 RSIIKERGARLREKGAQVLAQHLAMEVGKVRPVLIEKEG------LGRTEQFTQVEL--A 393

Query: 444 NHNIGDIIKVRITDVKISTLYGE 466
               GDI++ RI       L GE
Sbjct: 394 GGTAGDIVETRIIGHTGRHLLGE 416


>gi|323473663|gb|ADX84269.1| RNA modification enzyme, MiaB family [Sulfolobus islandicus REY15A]
 gi|323476314|gb|ADX81552.1| RNA modification enzyme, MiaB family [Sulfolobus islandicus
           HVE10/4]
          Length = 421

 Score =  190 bits (483), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 140/447 (31%), Positives = 233/447 (52%), Gaps = 36/447 (8%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +  +V++YGC +N  D+  M  +  S+GY  V + ++AD+I+LNTC +R +  E++    
Sbjct: 2   KTIYVETYGCALNRADTYVMMTLLKSEGYNFVENPENADIIILNTCAVRLETEERM---- 57

Query: 85  GRIRNLKNSRIKEGGDLL--VVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
                    RIKE   L   +VVAGC++ AE   +L  +P  +++ GPQ+  R+ +++ +
Sbjct: 58  -------KQRIKELNTLSKKLVVAGCMSSAEPATVLSIAPNASLI-GPQSVERIIDVI-K 108

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           +   K V++ D        R  I    ++   G  A + + +GC   C+FC+    R   
Sbjct: 109 SEERKIVLEGD--------RALITPRTFD---GKIAIIPVADGCAGNCSFCITKLARRKL 157

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLV 261
            S  L ++V+ AR  +  G  EI L GQ+  A+   GLD G   +  D++  ++EI G  
Sbjct: 158 RSYPLREIVNAARDAVKAGAKEIELTGQDTAAY---GLDLGGSISLVDVVNKVTEIDGDF 214

Query: 262 RLRYTTSHPRD---MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
            +R     P     + D LI+   +  V   ++HLPVQSG DR+LK MNR++T  EY+++
Sbjct: 215 MIRIGMMTPEQAMRIIDNLIEVMRNPKVY-KFIHLPVQSGDDRVLKLMNRKYTIDEYKEL 273

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           +  IRS  P   I++D I+G PGE +D F  T+ L+ ++ + +     YS R  T  ++M
Sbjct: 274 VSEIRSKIPFANITTDIIIGHPGEDEDAFNNTLLLMKELRFERIHLAMYSIRPNTRSASM 333

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSV 438
             QV ++VK +R+    K   +  +S +   VG    V+  + G+ KG +VGR      V
Sbjct: 334 -PQVPDSVKKKRIQIANKLYEDIALSIHLEYVGSTSRVITTELGR-KGSVVGRLMNYIPV 391

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYG 465
           V+ S+N  +G    V+IT+     L G
Sbjct: 392 VIKSENVELGKWYNVKITEASFYDLRG 418


>gi|168704786|ref|ZP_02737063.1| hypothetical protein GobsU_34937 [Gemmata obscuriglobus UQM 2246]
          Length = 467

 Score =  190 bits (483), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 130/437 (29%), Positives = 220/437 (50%), Gaps = 24/437 (5%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N  DS RM       GY        AD++++NTC   E A ++  + +  +  L
Sbjct: 28  SLGCPKNTVDSERMLGKLAQDGYSLQPDAAGADVVIVNTCGFIEPARQESLAVIREMLEL 87

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA---RFGK 147
           K    K G    VVVAGC+A+ + + +L + P V+ +VG      +  +++RA   R  +
Sbjct: 88  K----KAGKVGSVVVAGCMAERQKDVLLEQVPEVDQIVGVFGREEIAAVVDRAVSQRDEQ 143

Query: 148 RVVDTDYSVE--DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           R +     V   +   RL I    +       A+L + EGCD+ CT+C +P  RG  +++
Sbjct: 144 RSLFRPAPVRALEDTARLRITPRHF-------AYLKVSEGCDRLCTYCAIPKMRGKHVTK 196

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            + +V+ EAR+L  +GV E+ ++ Q+   + G  L G +   ++LL  L +++ +  +R 
Sbjct: 197 PIEEVIREARELAADGVRELIIVAQDTTYY-GMDLYG-RTRLAELLRELDKVENIEWIRT 254

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
             ++P  +SD LI+       ++PYL +P+Q  SDR+LK M RR       +++ R+R  
Sbjct: 255 LYAYPEHISDELIETFAGSKKIIPYLDMPLQHISDRVLKRMIRRVDRAATEKLLYRLREK 314

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            PD+AI + FI GFPGETD +F    D V +  + +   F YS   GTP   +   + E+
Sbjct: 315 WPDLAIRTTFITGFPGETDAEFEELRDFVAQFKFERVGVFPYSLEPGTPAEKLDGHLPED 374

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-----KGKLVGRSPWLQSVV- 439
           VK  R+  + +  +     + +A VG+   V+I+    E     +G+    +P +   V 
Sbjct: 375 VKQARVNAIMEVQQGVAFGWAEAQVGREHPVVIDGPDPEFANHFRGRTYADAPEIDCAVR 434

Query: 440 LNSKNHNIGDIIKVRIT 456
           +  KN   GD ++ +IT
Sbjct: 435 VKGKNLRPGDFVRAKIT 451


>gi|315651497|ref|ZP_07904518.1| 2-methylthioadenine synthetase [Eubacterium saburreum DSM 3986]
 gi|315486232|gb|EFU76593.1| 2-methylthioadenine synthetase [Eubacterium saburreum DSM 3986]
          Length = 440

 Score =  190 bits (483), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 132/440 (30%), Positives = 230/440 (52%), Gaps = 32/440 (7%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N  DS  M  +   +G+E  +  ++AD++++NTC   + A E+  + +     L
Sbjct: 7   SLGCDKNTVDSEMMLGLMNEKGFEYTDIDEEADVMIINTCGFIQSAKEESINAI-----L 61

Query: 91  KNSRIKEGGDL-LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149
           + S++KE G+L  ++V GC+AQ   +EI++  P V+ ++G  ++ ++ E +E    G+  
Sbjct: 62  EASKLKEVGNLKALIVTGCLAQRYKDEIIKEIPEVDALLGTSSFDKIVETVEEVLGGE-- 119

Query: 150 VDTDYSVEDKF---ERL-SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                 ++++F   +RL SI     N   G  A+L I EGC+K CT+C++P  RG   S 
Sbjct: 120 ------IKNEFLDLDRLPSISKKRKNSTGGYYAYLKIAEGCNKNCTYCIIPSLRGNYRSY 173

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            L  ++ +A+ L   G+ E+ L+ Q    + G  + G+K T   LL  L++I+G+  +R 
Sbjct: 174 PLDDLIAQAKDLATQGIKELILVAQETTLY-GVDIYGKK-TLPKLLKELAKIEGIEWIRI 231

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
              +P +++D LI      D +  YL +P+Q  SD IL+ M RR T  +   II R+R+ 
Sbjct: 232 LYCYPEEITDELIDVIASEDKVCKYLDIPIQHASDNILRRMARRTTYDDLVNIIGRLRNN 291

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            PDI + +  I GFPGET +D    ++ + ++ + +   F YS   GT  +    Q+DE 
Sbjct: 292 IPDITLRTTIIAGFPGETVEDVDTVIEFIKQMKFERLGVFTYSEEEGTVAAGFDNQIDEK 351

Query: 386 VKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSV 438
            K    +R++ +Q+++ E+ +      VG+   VLIE    ++   +GR+    P +   
Sbjct: 352 EKEARRDRIMRVQQEISEKNLERK---VGKTFRVLIEGKLPDENVYIGRTYMDVPGVDGY 408

Query: 439 VL--NSKNHNIGDIIKVRIT 456
           V     + +  GD   V IT
Sbjct: 409 VFVNTEREYMSGDFCDVLIT 428


>gi|170769043|ref|ZP_02903496.1| MiaB-like tRNA modifying enzyme YliG [Escherichia albertii TW07627]
 gi|170122115|gb|EDS91046.1| MiaB-like tRNA modifying enzyme YliG [Escherichia albertii TW07627]
          Length = 441

 Score =  190 bits (482), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 145/462 (31%), Positives = 236/462 (51%), Gaps = 45/462 (9%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  FV S GC  N+ DS R+     ++GY+ V S DDAD++++NTC   + A ++    
Sbjct: 8   PKIGFV-SLGCPKNLVDSERILTELRTEGYDVVPSYDDADMVIVNTCGFIDSAVQESLEA 66

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G   N       E G   V+V GC+   E ++I    P V  + GP +Y ++ E +   
Sbjct: 67  IGEALN-------ENGK--VIVTGCLGAKE-DQIREVHPKVLEITGPHSYEQVLEHVHH- 115

Query: 144 RFGKRVVDTDYSVEDKFER-LSIV-DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
                     Y  + K    LS+V + G        A+L I EGC+  CTFC++P  RG 
Sbjct: 116 ----------YVPKPKHNPFLSLVPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGD 165

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYS 253
            +SR + +V+ EA++L+D GV EI ++ Q+ +A+      R    +GE  K +   L   
Sbjct: 166 LVSRPIGEVLSEAKRLVDAGVKEILVISQDTSAYGVDVKHRTGFHNGEPVKTSMVSLCEQ 225

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
           LS++    RL Y   +P       + A G +   +PYL +P+Q  S RILK M R  +  
Sbjct: 226 LSKLGIWTRLHYVYPYPHVDDVIPLMAEGKI---LPYLDIPLQHASPRILKLMKRPGSVD 282

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
                I + R + P++ + S FIVGFPGET++DF+  +D + +    +   FKYSP  G 
Sbjct: 283 RQLARIKQWREICPELTLRSTFIVGFPGETEEDFQMLLDFLKEARLDRVGCFKYSPVEGA 342

Query: 374 PGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKL 428
             + + +QV E VK E   R + LQ+++  +++      VG+ I V+I++  +E   G+ 
Sbjct: 343 DANALPDQVPEEVKEERWNRFMQLQQQISAERLQEK---VGREILVIIDEVDEEGAIGRS 399

Query: 429 VGRSPWLQ-SVVLNSKNH-NIGDIIKVRITDVKISTLYGELV 468
           +  +P +  +V LN + H   GDI++V++       L+G  V
Sbjct: 400 MADAPEIDGAVYLNGETHVKPGDILRVKVEHADEYDLWGSRV 441


>gi|315223707|ref|ZP_07865557.1| 2-methylthioadenine synthetase [Capnocytophaga ochracea F0287]
 gi|314946282|gb|EFS98281.1| 2-methylthioadenine synthetase [Capnocytophaga ochracea F0287]
          Length = 437

 Score =  190 bits (482), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 128/424 (30%), Positives = 211/424 (49%), Gaps = 37/424 (8%)

Query: 33  GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92
           GC++N  ++  +   F  +GY+RV+  + AD+ V+NTC + E A +       + + +  
Sbjct: 10  GCKLNFSETSTIARSFEEEGYQRVDFDEPADIYVINTCSVTENADK-------QFKQIVR 62

Query: 93  SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-------ERARF 145
             +K      +   GC AQ + EE L     V++V+G +  + + + L       E    
Sbjct: 63  KALKTNPKAFLAAVGCYAQLKPEE-LASVDGVDLVLGAKEKFNITQYLDDLTKNNEGVVH 121

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
              + +TD+ V           G Y+      AFL +Q+GCD  CT+C +P  RGI  S 
Sbjct: 122 SCEISETDFYV-----------GSYSIGDRTRAFLKVQDGCDYKCTYCTIPMARGISRSD 170

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK---CTFSDLLYSLSEIKGLVR 262
           ++  ++  A+K+ D G+ EI L G N+  + GKG  G K    TF +L+ +L +++G+ R
Sbjct: 171 TIENIIANAKKISDKGIKEIVLTGVNIGDY-GKGEFGNKKHEHTFLELVQALDKVEGIER 229

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LR ++  P  + D  I      +  +P+ H+P+QSGS+ ILK M RR+    Y   + +I
Sbjct: 230 LRISSIEPNLIKDETIDFIAQSNSFVPHFHIPLQSGSNEILKKMKRRYLRELYVSRVAKI 289

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R V PD  I  D IVGFPGETD+ F  T   ++ +  +    F YS R  T    M   V
Sbjct: 290 REVMPDACIGVDVIVGFPGETDEHFLETYYFLNDLDISYLHVFTYSERDNTEAVLMDGVV 349

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-------HGKEKGKLVGRSPWL 435
            + V+A+R   L+    +++ +F  + +G+   VL E        HG  +  +  ++PW 
Sbjct: 350 PDAVRAKRSKMLRGLSAKKRNAFYTSQLGKEKTVLFESDNKQGYIHGFTENYVKVKAPWD 409

Query: 436 QSVV 439
            S+V
Sbjct: 410 PSLV 413


>gi|227826584|ref|YP_002828363.1| RNA modification enzyme, MiaB family [Sulfolobus islandicus
           M.14.25]
 gi|227829226|ref|YP_002831005.1| RNA modification enzyme, MiaB family [Sulfolobus islandicus
           L.S.2.15]
 gi|229577995|ref|YP_002836393.1| RNA modification enzyme, MiaB family [Sulfolobus islandicus
           Y.G.57.14]
 gi|229583207|ref|YP_002841606.1| RNA modification enzyme, MiaB family [Sulfolobus islandicus
           Y.N.15.51]
 gi|229583748|ref|YP_002842249.1| RNA modification enzyme, MiaB family [Sulfolobus islandicus
           M.16.27]
 gi|238618670|ref|YP_002913495.1| RNA modification enzyme, MiaB family [Sulfolobus islandicus M.16.4]
 gi|284996581|ref|YP_003418348.1| RNA modification enzyme, MiaB family [Sulfolobus islandicus
           L.D.8.5]
 gi|227455673|gb|ACP34360.1| RNA modification enzyme, MiaB family [Sulfolobus islandicus
           L.S.2.15]
 gi|227458379|gb|ACP37065.1| RNA modification enzyme, MiaB family [Sulfolobus islandicus
           M.14.25]
 gi|228008709|gb|ACP44471.1| RNA modification enzyme, MiaB family [Sulfolobus islandicus
           Y.G.57.14]
 gi|228013923|gb|ACP49684.1| RNA modification enzyme, MiaB family [Sulfolobus islandicus
           Y.N.15.51]
 gi|228018797|gb|ACP54204.1| RNA modification enzyme, MiaB family [Sulfolobus islandicus
           M.16.27]
 gi|238379739|gb|ACR40827.1| RNA modification enzyme, MiaB family [Sulfolobus islandicus M.16.4]
 gi|284444476|gb|ADB85978.1| RNA modification enzyme, MiaB family [Sulfolobus islandicus
           L.D.8.5]
          Length = 421

 Score =  190 bits (482), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 141/451 (31%), Positives = 230/451 (50%), Gaps = 44/451 (9%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +  +V++YGC +N  D+  M  +  S+GY  V + ++AD+I+LNTC +R +  E++    
Sbjct: 2   KTIYVETYGCALNRADTYVMMTLLKSEGYNFVENPENADIIILNTCAVRLETEERM---- 57

Query: 85  GRIRNLKNSRIKEGGDLL--VVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
                    RIKE   L   +VVAGC++ AE   +L  +P  +++ GPQ+          
Sbjct: 58  -------KQRIKELNTLSKKLVVAGCMSSAEPATVLSIAPNASLI-GPQSV--------- 100

Query: 143 ARFGKRVVDTDYSVEDKF----ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
               +R++D   S E K     +R  I    ++   G  A + + +GC   C+FC+    
Sbjct: 101 ----ERIIDVIKSEERKIVLEGDRALITPRTFD---GKIAIIPVADGCAGNCSFCITKLA 153

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEI 257
           R    S  L ++V+ AR  +  G  EI L GQ+  A+   GLD G   +  D++  ++EI
Sbjct: 154 RRKLRSYPLREIVNAARDAVKAGAKEIELTGQDTAAY---GLDLGGSISLVDVVNKVTEI 210

Query: 258 KGLVRLRYTTSHPRD---MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
            G   +R     P     + D LI+   +  V   ++HLPVQSG DR+LK MNR++T  E
Sbjct: 211 DGDFMIRIGMMTPEQAMRIIDNLIEVMRNPKVY-KFIHLPVQSGDDRVLKLMNRKYTIDE 269

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
           Y++++  IRS  P   I++D I+G PGE +D F  T+ L+ ++ + +     YS R  T 
Sbjct: 270 YKELVSEIRSKIPFANITTDIIIGHPGEDEDAFNNTLLLMKELRFERIHLAMYSIRPNTR 329

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPW 434
            ++M  QV ++VK +R+    K   +  +S +   VG    V+  + G+ KG +VGR   
Sbjct: 330 SASM-PQVPDSVKKKRIQIANKLYEDIALSIHLEYVGSTSRVITTELGR-KGSVVGRLMN 387

Query: 435 LQSVVLNSKNHNIGDIIKVRITDVKISTLYG 465
              VV+ S+N  +G    V+IT+     L G
Sbjct: 388 YIPVVIRSENVELGKWYNVKITEASFYDLRG 418


>gi|83309313|ref|YP_419577.1| 2-methylthioadenine synthetase [Magnetospirillum magneticum AMB-1]
 gi|82944154|dbj|BAE49018.1| 2-methylthioadenine synthetase [Magnetospirillum magneticum AMB-1]
          Length = 452

 Score =  190 bits (482), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 137/438 (31%), Positives = 221/438 (50%), Gaps = 29/438 (6%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           ++GC++N Y+S  M++   ++  E        + +++NTC +  +A  +    + +IR  
Sbjct: 44  TFGCRLNAYESEVMKE--HAKATE-----SGVETVIVNTCAVTAEAERQARQAIRKIR-- 94

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
                +E  D  +VV GC AQA   E     P ++ ++G     + P++   A   +R+V
Sbjct: 95  -----RERPDARIVVTGCAAQAH-PETFDAMPEIDQILGNAEKMQ-PDIFA-APPAERIV 146

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
             D  +E +     +V G   R R   AF+ +Q+GCD  CTFC++P+ RG   S  + ++
Sbjct: 147 VGDI-MEVREVASHLVSGFEGRAR---AFVEVQQGCDHRCTFCIIPFGRGPNRSVPMGRI 202

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270
           V++ ++L+  G  E+ L G +V A+ G  L G+      +   L+ +  L RLR ++  P
Sbjct: 203 VEQIKELVAGGFNEVVLTGVDVTAY-GADLPGKPGLGQLVRRLLAALPELPRLRLSSLDP 261

Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330
            ++ + L+ A      L+P+ HL VQ+G D ILK M RRH   +   +  RIR++RPD  
Sbjct: 262 VEVDEDLLAAIASEARLLPHFHLSVQAGDDTILKRMKRRHLRGDVITLAARIRALRPDAV 321

Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER 390
           + +D I GFP E ++ F+ ++DLVD+ G      F +S R GTP + M  +V  +V  ER
Sbjct: 322 LGADIIAGFPTEDEEMFQHSLDLVDEAGLTHLHVFPFSARPGTPAARM-PKVKGDVVKER 380

Query: 391 LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDI 450
              L+ K      +F    +G +  VLIEK GK      G S     V +       G I
Sbjct: 381 AARLRAKGAAAMAAFLATRIGGVESVLIEKDGK------GHSAHYLPVRVAGCAAEPGTI 434

Query: 451 IKVRITDVKISTLYGELV 468
           + VRIT V    L GEL 
Sbjct: 435 LNVRITSVDGDELVGELA 452


>gi|87301773|ref|ZP_01084607.1| hypothetical protein WH5701_00570 [Synechococcus sp. WH 5701]
 gi|87283341|gb|EAQ75296.1| hypothetical protein WH5701_00570 [Synechococcus sp. WH 5701]
          Length = 453

 Score =  190 bits (482), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 139/452 (30%), Positives = 226/452 (50%), Gaps = 38/452 (8%)

Query: 33  GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92
           GC+ N  D+  M  +    GY       DA ++V+NTC   + A ++       +R L  
Sbjct: 7   GCEKNRVDTEHMLGLLAQAGYGISADERDASVVVVNTCSFIQDARQE------SVRTLVE 60

Query: 93  SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV--- 149
             + E G  L++ AGC+AQ   EE+L   P    +VG   Y  + ++LER   G+RV   
Sbjct: 61  --LAEQGKELII-AGCLAQHFREELLESLPEARAIVGTGDYQHIVDVLERVEAGERVNRV 117

Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209
            D    V D  E L      Y       AFL + EGCD  C FC++P  RG + SR++  
Sbjct: 118 SDVPTFVGD--EHLP----RYRTTSEAVAFLKVAEGCDYRCAFCIIPRLRGDQRSRTIES 171

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK-GLVRLRYTTS 268
           +V EA +L D GV E+ L+ Q    + G  L G K   ++LL +L E++   +R+ Y  +
Sbjct: 172 IVAEAHQLADQGVQELILISQITTNY-GLDLYG-KPQLAELLRALGEVEIPWIRVHY--A 227

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
           +P  ++  ++ A+ ++  ++PYL LP+Q     +L++MNR        +++ RIR   PD
Sbjct: 228 YPTGLTPEVLSAYREVPNVLPYLDLPLQHSHPEVLRAMNRPWQTGLTTELLGRIREQLPD 287

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
             + + FIVGFPGET++ F   +  V++  +     F +SP  GT   ++ + V   V  
Sbjct: 288 AVLRTTFIVGFPGETEEQFEHLLRFVEEQRFDHVGVFTFSPEDGTAAVDLPDPVPAEVAI 347

Query: 389 E---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVVLN 441
           E   RL+  Q+ +  ++   N + VG+I++VLIE+     G+++GR    +P +   V  
Sbjct: 348 ERRNRLMAAQQPIAAER---NASWVGRIVDVLIEQENPSNGEMIGRCARFAPDVDGEVRV 404

Query: 442 SKNHN-----IGDIIKVRITDVKISTLYGELV 468
           S          G ++ VR+T      L GE+V
Sbjct: 405 SPGPGGLCAAPGTMVPVRLTASTPYDLQGEVV 436


>gi|46201319|ref|ZP_00055284.2| COG0621: 2-methylthioadenine synthetase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 418

 Score =  190 bits (482), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 138/447 (30%), Positives = 218/447 (48%), Gaps = 43/447 (9%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V ++GC++N Y+S  M++      + R       + +++NTC +  +A  +    + +IR
Sbjct: 8   VLTFGCRLNAYESEVMKE------HARATE-SGVETVIVNTCAVTAEAERQARQAIRKIR 60

Query: 89  NLK-NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG------PQTYYRLPELLE 141
             + N+RI        VV GC AQA   E     P ++ ++G      P  +   P    
Sbjct: 61  RERPNARI--------VVTGCAAQAH-PETFDAMPEIDQILGNAEKMQPGIFAEPP---- 107

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
                +R+V  D  +E +     +V G   R R   AF+ +Q+GCD  CTFC++P+ RG 
Sbjct: 108 ----AQRIVVGDI-MEVREVASHLVSGFEGRAR---AFVEVQQGCDHRCTFCIIPFGRGP 159

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
             S  + ++V++ ++L+  G  E+ L G +V A+ G  L G+      +   L+ +  L 
Sbjct: 160 NRSVPMGRIVEQIKELVAGGFNEVVLTGVDVTAY-GADLPGKPGLGQLVRRLLAALPELP 218

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           RLR ++  P ++ + L+ A      L+P+ HL VQ+G D ILK M RRH   +   +  R
Sbjct: 219 RLRLSSLDPVEVDEELLTAMASEPRLLPHFHLSVQAGDDTILKRMKRRHLRSDVIALAAR 278

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           IR++RPD  + +D I GFP E +  F  +++LVD+ G      F +S R GTP + M  +
Sbjct: 279 IRALRPDAVLGADIIAGFPTEDEAMFGRSLELVDEAGLTHLHVFPFSARPGTPAARM-PK 337

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           V  +V  ER   L+ K      +F    +G    VLIEK GK      G S     V + 
Sbjct: 338 VKGDVVKERAARLRAKGAAAMEAFLATRIGSEESVLIEKDGK------GHSAHYLPVRVA 391

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                 G I+ VRIT V+   L GEL 
Sbjct: 392 GCTAEPGTILNVRITSVEGDELVGELA 418


>gi|283780939|ref|YP_003371694.1| MiaB-like tRNA modifying enzyme YliG [Pirellula staleyi DSM 6068]
 gi|283439392|gb|ADB17834.1| MiaB-like tRNA modifying enzyme YliG [Pirellula staleyi DSM 6068]
          Length = 465

 Score =  190 bits (482), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 133/456 (29%), Positives = 232/456 (50%), Gaps = 42/456 (9%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ DS RM  +    GY+ V   D AD +V+NTC   E+A  + +  +  +  L
Sbjct: 23  SLGCPKNLVDSERMLGLLKLDGYDLVAEPDGADFVVVNTCGFIERARTESFQAIDEMLEL 82

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG-------PQTYYRLPELLERA 143
           K    K+G    V+V+GC+A+ + E++L   P ++ +VG        Q   RL   LE  
Sbjct: 83  K----KQGRTKGVIVSGCLAERQKEQLLEDRPGIDCLVGVFGREQITQVADRLLGSLEEQ 138

Query: 144 RFG------KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197
           R        + + DTD        RL I    +       A+L I EGCD+ CTFC +P 
Sbjct: 139 RSVFQPAPIRALSDTD--------RLRITPRHF-------AYLKISEGCDRLCTFCAIPK 183

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257
            RG   ++ + +V+ EAR+L  +GV E+ ++ Q+   + G  L GE    ++LL  + ++
Sbjct: 184 MRGKHATKPMEEVLKEARQLAADGVKELVIVAQDTTYY-GIDLYGEP-RLAELLREIEKV 241

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
           +G+  +R    +P  ++D LI      + ++PY+ +P+Q  +D +L+ M+RR T  E   
Sbjct: 242 EGIQWIRLMYFYPMYITDELIDVIAKSEKIVPYIDMPLQHINDTMLRRMSRRVTRAETEL 301

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
            I ++R   P++ + + FI GFPGET + +    + + +  + +   F YS    TP +N
Sbjct: 302 QIKKLREAIPNLTLRTTFITGFPGETQEQYEELREFLREQKFERMGVFTYSFEPDTPAAN 361

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRS---- 432
           + + + E VK ER   L    +E   ++N+A + +++ V++++  + EK   +GRS    
Sbjct: 362 LPDHLSEEVKNERREALMAVQQELAFAWNEAQIDKVMPVILDQSVEGEKNVWIGRSMADA 421

Query: 433 PWLQSVVLNSKNH---NIGDIIKVRITDVKISTLYG 465
           P +  +V  + +    + GDI+ V+I   +   L G
Sbjct: 422 PDVDGLVFVTGHKYRLHAGDIVDVQIVTSQQYDLVG 457


>gi|256820597|ref|YP_003141876.1| MiaB-like tRNA modifying enzyme [Capnocytophaga ochracea DSM 7271]
 gi|256582180|gb|ACU93315.1| MiaB-like tRNA modifying enzyme [Capnocytophaga ochracea DSM 7271]
          Length = 435

 Score =  190 bits (482), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 128/424 (30%), Positives = 210/424 (49%), Gaps = 37/424 (8%)

Query: 33  GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92
           GC++N  ++  +   F  +GY+RV+  D AD+ V+NTC + E A +       + + +  
Sbjct: 10  GCKLNFSETSTIARSFEEEGYQRVDFDDPADIYVINTCSVTENADK-------QFKQIVR 62

Query: 93  SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-------ERARF 145
             +K      +   GC AQ + EE L     V++V+G +  + + + +       E    
Sbjct: 63  KALKTNPKAFLAAVGCYAQLKPEE-LASVDGVDLVLGAKEKFNITQYIDDLTKNNEGVVH 121

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
              + +TD+ V           G Y+      AFL +Q+GCD  CT+C +P  RGI  S 
Sbjct: 122 SCEISETDFYV-----------GSYSIGDRTRAFLKVQDGCDYKCTYCTIPMARGISRSD 170

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK---CTFSDLLYSLSEIKGLVR 262
           ++  ++  A+K+ D G+ EI L G N+  + GKG  G K    TF +L+ +L +++G+ R
Sbjct: 171 TIENIIANAKKISDKGIKEIVLTGVNIGDY-GKGEFGNKKHEHTFLELVQALDKVEGIER 229

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LR ++  P  + D  I         +P+ H+P+QSGS+ ILK M RR+    Y   + +I
Sbjct: 230 LRISSIEPNLIKDETIDFIAQSKSFVPHFHIPLQSGSNEILKKMKRRYLRELYVSRVAKI 289

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R V PD  I  D IVGFPGETD+ F  T   ++ +  +    F YS R  T    M   V
Sbjct: 290 REVMPDACIGVDVIVGFPGETDEHFLETYYFLNDLDISYLHVFTYSERDNTEAVLMDGVV 349

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-------HGKEKGKLVGRSPWL 435
            + V+A+R   L+    +++ +F  + +G+   VL E        HG  +  +  ++PW 
Sbjct: 350 PDAVRAKRSKMLRGLSAKKRNAFYTSQLGKEKTVLFESDNKQGYIHGFTENYVKVKAPWD 409

Query: 436 QSVV 439
            S+V
Sbjct: 410 PSLV 413


>gi|323705384|ref|ZP_08116959.1| MiaB-like tRNA modifying enzyme YliG [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323535286|gb|EGB25062.1| MiaB-like tRNA modifying enzyme YliG [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 437

 Score =  190 bits (482), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 129/449 (28%), Positives = 237/449 (52%), Gaps = 30/449 (6%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ DS +M  +   +G+  VN+ +DAD++++NTC   E A  +   ++     L
Sbjct: 8   SLGCAKNIVDSEKMLGIIKKKGFNIVNNENDADVLIINTCGFIESAKRESIDYI-----L 62

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
           +  ++K+     ++ +GC+++   +E+L   P ++ V+G   + ++ +++E    GKR++
Sbjct: 63  EMGKLKKKRLKSLIASGCLSERYKDELLESLPELDAVIGTGDFLKIADVIEDTLKGKRIL 122

Query: 151 DTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209
           +  ++ E D  +   I+    +      A+L I EGC+  C+FC++P  RG   S  +  
Sbjct: 123 EYGHANELDDKDSPRILSTPKH-----YAYLKISEGCNNKCSFCIIPKLRGRYRSVKIED 177

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYTTS 268
           +++EA+ L +NGV E+ L+ Q+   +   G+D   K     LL  L+ I G+  +R   +
Sbjct: 178 LLNEAKMLAENGVKELILIAQDTTKY---GIDIYNKYMLPTLLRKLANINGIKWIRILYA 234

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
           +P  ++D LI      + ++ Y+ +P+Q  +D +L+ M R  T  +    I++++S+ P 
Sbjct: 235 YPDSITDELIDEIKTNEKVLKYIDIPLQHSNDEVLRRMKRNTTRKKIEDTIEKLKSI-PG 293

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           + I + FIVGFPGETDD+F      + +  + +   F YS    T   +M  Q+ E +K 
Sbjct: 294 MIIRTTFIVGFPGETDDEFDDLKKFIVEKKFNKLGVFTYSREEDTEAYDMQNQISEQIKQ 353

Query: 389 ER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVL- 440
           +R   ++ LQK +    + +N   +G   EV++E  G++ G   GRS    P +  +   
Sbjct: 354 KRYNEIMLLQKNI---SLEYNKRLIGSEFEVVVE--GQKDGLYYGRSYIDAPDIDGITFF 408

Query: 441 -NSKNHNIGDIIKVRITDVKISTLYGELV 468
            ++K  NIGD  KV+IT      L GEL+
Sbjct: 409 KSNKKLNIGDFAKVKITKAFDYDLMGELL 437


>gi|312127957|ref|YP_003992831.1| miab-like tRNA modifying enzyme ylig [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311777976|gb|ADQ07462.1| MiaB-like tRNA modifying enzyme YliG [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 440

 Score =  190 bits (482), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 139/452 (30%), Positives = 230/452 (50%), Gaps = 33/452 (7%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ DS  M       G+E  +  +DAD+IV+NTC     A ++    +  +   
Sbjct: 8   SLGCNKNLVDSEIMMGACVKAGFEITSHAEDADVIVVNTCGFINDAKQESIDTILDMAEY 67

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
           KN + K      ++V GC+ Q   +EIL + P V+ ++G +   +LPE+++    GK+ +
Sbjct: 68  KNKKCK-----FLIVTGCLTQRYKDEILEQMPEVDAILGVKEMLKLPEVIKDLYEGKQKI 122

Query: 151 ----DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
               DT   V        I    Y       A++ I EGC+  C++C +P  RG   SR 
Sbjct: 123 KVFDDTSSFVYYSSMPRVIATPSY------YAYIKIAEGCNNRCSYCSIPLIRGKYTSRP 176

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
           +  +V EA++L + G  EI L  Q+   + G  L G+K   + LL  L +I+ +  +R+ 
Sbjct: 177 IEDIVKEAKELAEKGYQEIVLTAQDTTKY-GTDLYGKKMLHA-LLEELEKIEKIKWIRFL 234

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
            S+P D+ + LI+       ++ Y  +P+Q  +DRILK MNR+ T    +++I++IR   
Sbjct: 235 YSYPEDVDENLIEVVKSSSKIVNYFDIPIQHINDRILKLMNRKTTKEGIKRLIEKIRRSF 294

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
            ++ I +  +VGFP ETD++F      +    + +  +F YS   GT  S  L QVD+ V
Sbjct: 295 DEVIIRTTVLVGFPTETDEEFEELCSFLKWAEFDRLGAFMYSQEEGTLASQ-LPQVDDEV 353

Query: 387 KA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL-VGRSPWL------Q 436
           K    E++L +Q+K+ ++Q   N   VG+  EV+IE   K+K    +GRS +       +
Sbjct: 354 KQRRYEKVLNIQRKISKRQ---NKKRVGREYEVVIE--AKDKNNFYIGRSQFEAPEVDGK 408

Query: 437 SVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            +V + K    G  +KV+I D     L GE++
Sbjct: 409 VLVFSQKKLTAGKFVKVKILDAFEYDLVGEII 440


>gi|238924037|ref|YP_002937553.1| MiaB-like tRNA modifying enzyme YliG [Eubacterium rectale ATCC
           33656]
 gi|238875712|gb|ACR75419.1| MiaB-like tRNA modifying enzyme YliG [Eubacterium rectale ATCC
           33656]
 gi|291524773|emb|CBK90360.1| SSU ribosomal protein S12P methylthiotransferase [Eubacterium
           rectale DSM 17629]
          Length = 441

 Score =  189 bits (481), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 137/455 (30%), Positives = 229/455 (50%), Gaps = 28/455 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC  N+ DS  M  M  + G E  +    AD+I++N+C     A E+  + + 
Sbjct: 2   KLLFISLGCDKNLVDSEYMIGMLANDGIEMTDDETQADIIIVNSCCFIGDAKEESINTI- 60

Query: 86  RIRNLKNSRIKEGGDL-LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTY----YRLPELL 140
               L+ ++ KE G    ++V GC+AQ   +EI +  P V+ ++G  +Y      + E L
Sbjct: 61  ----LEMAQYKETGKCKSLIVTGCLAQRYKDEIFKEIPEVDAILGTNSYDTIVEAVHETL 116

Query: 141 ERARFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           E+ R+     ++   S++ K     IV  G     G  A+L I EGC+K CT+CV+P  R
Sbjct: 117 EKHRYSNLHTLEGLPSIKTK----RIVTTG-----GHFAYLKIAEGCNKNCTYCVIPSVR 167

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G   S  +  ++++A+ L++ G  E+ L+ Q    + G  L GEK +   LL  L++I G
Sbjct: 168 GRYRSVPMEDLIEQAKSLVEQGAKELILVAQETTLY-GVDLYGEK-SLHKLLDELNKISG 225

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           L  +R    +P ++ D LI++    + +  YL +P+Q  +D IL+ M R+ T  E  + I
Sbjct: 226 LFWIRIMYCYPEEIYDELIESMIKDEKVCHYLDMPIQHCNDDILRRMGRKTTKAELMERI 285

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
             +R   PDI + +  I GFPGET D+    M  V+ + + +  +F YSP  GT  + M 
Sbjct: 286 RMLRERIPDITLRTTLICGFPGETQDNHEELMQFVNDMEFDRLGAFTYSPEEGTKAAAMP 345

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWL 435
           +Q+DE++KA+    + +   E     N+   G+ + V IE    ++   +GR+    P +
Sbjct: 346 DQIDEDIKADWQADVMELEEEVIFDKNETLKGKELYVFIEGKVADENAYIGRTYRDAPNV 405

Query: 436 QSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468
              +  + +  +  GDI KV +T      L GELV
Sbjct: 406 DGYIFINTDETLMTGDICKVMVTGAYEYDLIGELV 440


>gi|229815354|ref|ZP_04445689.1| hypothetical protein COLINT_02400 [Collinsella intestinalis DSM
           13280]
 gi|229809134|gb|EEP44901.1| hypothetical protein COLINT_02400 [Collinsella intestinalis DSM
           13280]
          Length = 445

 Score =  189 bits (481), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 141/461 (30%), Positives = 221/461 (47%), Gaps = 50/461 (10%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA----EKVYSFLGR 86
           + GC  N  D+ RM  +    GY+ V S +DAD +++NTC     A     E   +    
Sbjct: 10  TLGCAKNEVDTDRMRALLNGAGYDEVFSAEDADAVIINTCSFLASATSESIETTLTLAEE 69

Query: 87  I-RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           I   ++ +RI        V+ GCV    G E+            P     LPE+    R 
Sbjct: 70  ISEGVRGTRI--------VMCGCVPSRYGSEL------------PD---ELPEVAAFVRT 106

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGY--NRKRGV---TAFLTIQEGCDKFCTFCVVPYTRG 200
            +   D   SV D+   +  VD  +  + KR V    A++ I +GCD++C+FC +PY RG
Sbjct: 107 DEE--DGIVSVMDEVLGIERVDPPFIPSVKRTVESAVAYVKISDGCDRYCSFCAIPYIRG 164

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE---KCTFSDLLYSLSEI 257
              SRS   ++ E R L+  GV EI L+GQ+   W G     E       + L+ +++E 
Sbjct: 165 RYHSRSAESILSEVRDLVAGGVREIVLIGQDTGIW-GTDFKDEVDGPTNLAQLMIAVAEA 223

Query: 258 --KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
                V +R     P  M+D LI A  D   ++PY+ +PVQ  + R+LK+M+R  +A + 
Sbjct: 224 VRPEHVWIRVLYLQPEGMTDELIAAIRDTPEVLPYIDIPVQHCNARVLKAMHRSGSAEQL 283

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
             +  ++R+  P + I +  +VGFPGETDD+    +  +D+ G+     F YS   GT  
Sbjct: 284 SDLFAKLRAEIPAMVIRTTSLVGFPGETDDEAAEMLAFMDREGFDYTSVFPYSQEEGTFA 343

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE--KHGKEKGKLVGRSP 433
           + M  QVDE+VK ER             +   A VG++ EV+++  +   E  +L+G + 
Sbjct: 344 AKMDGQVDEDVKLERTQAAMDLAEALGFAATAAHVGEVAEVIVDGIEETDEGPELIGHA- 402

Query: 434 WLQ------SVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           W Q      +V L   +  +GDI++V+ TD     L GE+V
Sbjct: 403 WFQAPDSDGAVHLEVTDAAVGDILQVKFTDSFCYELVGEVV 443


>gi|302670644|ref|YP_003830604.1| MiaB-like tRNA modifying enzyme [Butyrivibrio proteoclasticus B316]
 gi|302395117|gb|ADL34022.1| MiaB-like tRNA modifying enzyme [Butyrivibrio proteoclasticus B316]
          Length = 451

 Score =  189 bits (481), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 151/458 (32%), Positives = 223/458 (48%), Gaps = 38/458 (8%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC-HIREKAAEKVYSFLGRIRN 89
           S GC  N  D+  M  M   +G+   +   +A+  V+NTC  I +   E + + L     
Sbjct: 7   SLGCDKNRVDTEVMLGMLADRGHNFTDDEQEAEAAVVNTCCFINDAKEESINTILELAER 66

Query: 90  LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-ERARFGKR 148
            K+ ++K      ++V GC+AQ   EEI    P V+ ++G  +  ++ E L E     K 
Sbjct: 67  RKSGQLK-----ALIVTGCLAQRYKEEIQDEIPEVDEILGVSSTDKIIEALDETIERNKL 121

Query: 149 VVDTDYSVEDKFERLSIVDGGYNR---KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
               +Y   D   R  I  GG  R     G+  +L I EGCDK CT+C++P  RG   S 
Sbjct: 122 FSHKNYF--DDVNRKPI--GGKKRVITTGGLYNYLKIAEGCDKHCTYCIIPKVRGAYRSV 177

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            + Q++ +AR L + GV E+ L+ Q    + G  L GEK    +LL+ L EI G   +R 
Sbjct: 178 PMEQLLADARNLAEAGVTELLLVAQETTLY-GTDLYGEK-KLPELLHKLCEIDGFKWIRI 235

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
              +P ++++ LI+       +  YL +P+QSGSDRILK M RR    E R +++ +R  
Sbjct: 236 LYCYPEEITEELIQTIKTEPKICHYLDIPIQSGSDRILKLMGRRTNNAEIRALVEHLREE 295

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            PDI I +  I GFPGET  D   T  LV+ + + +   F YS    TP + M +QV E 
Sbjct: 296 IPDICIRTTLISGFPGETAADHNETFKLVEDLRFDRLGVFTYSQEEDTPAATMPDQVTER 355

Query: 386 VKAER---LLCLQKKLREQQVSFNDA--CVGQIIEVLIE-----KHGKEKGKLVGRS--- 432
           VK  R   L+ LQ     Q+++F +A   VG+I+E +IE        +E    V R+   
Sbjct: 356 VKNTRRNKLMRLQ-----QEIAFENAENMVGKIVEAVIEGRITDTDDEEGFSYVARTYKD 410

Query: 433 -PWLQSVVLNS---KNHNIGDIIKVRITDVKISTLYGE 466
            P +   V  +   +    GD IKV IT      L GE
Sbjct: 411 APDIDGYVFVTGVKRELMTGDYIKVLITGSNEYDLIGE 448


>gi|295133883|ref|YP_003584559.1| 2-methylthioadenine synthetase [Zunongwangia profunda SM-A87]
 gi|294981898|gb|ADF52363.1| possible 2-methylthioadenine synthetase [Zunongwangia profunda
           SM-A87]
          Length = 445

 Score =  189 bits (481), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 130/425 (30%), Positives = 210/425 (49%), Gaps = 39/425 (9%)

Query: 33  GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92
           GC++N  ++  +   F  +G+E+V   + AD+ V+NTC + E A +       R + +  
Sbjct: 12  GCKLNFSETSTIARSFQEEGFEKVEFNEYADIYVINTCSVTENADK-------RFKTIVK 64

Query: 93  SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE---RARFGK-- 147
              K   +  ++  GC AQ + EE L     V++V+G    +++ + L    +  FG+  
Sbjct: 65  QAQKANEEAFIIGVGCYAQLKPEE-LAAVDGVDLVLGATEKFKITDYLHDLSKNDFGEVH 123

Query: 148 --RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
              + + D+ V           G Y+      AFL +Q+GCD  CT+C +P  RGI  S 
Sbjct: 124 SCEIQEADFYV-----------GSYSIGDRTRAFLKVQDGCDYKCTYCTIPLARGISRSD 172

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK---CTFSDLLYSLSEIKGLVR 262
            L  V+  A ++ + G+ EI L G N+  + GKG  G K    TF DL+ +L E+KG+ R
Sbjct: 173 KLENVLKNAAEISEQGIKEIVLTGVNIGDY-GKGEFGNKKHEHTFLDLVKALDEVKGIER 231

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LR ++  P  + +  I    D    +P+ H+P+QSGS+ ILK M RR+    Y   + +I
Sbjct: 232 LRISSIEPNLLKNETIDFVSDSSTFVPHFHIPLQSGSNDILKLMRRRYLRELYVDRVAQI 291

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           + V P   I  D IVGFPGETD+ F  T   + ++  +    F YS R  TP + M   V
Sbjct: 292 KKVMPHACIGVDVIVGFPGETDEHFLETYTFLTELDISYLHVFTYSERDNTPAAEMDGVV 351

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG--------RSPW 434
              V+ +R   L+    +++ +F ++ +G    VL E   KE G + G        ++PW
Sbjct: 352 SNKVRKKRSKMLRGLSAKKRRAFYESQLGTTHTVLFEGENKE-GYIHGFTENYVKVKAPW 410

Query: 435 LQSVV 439
              +V
Sbjct: 411 NPELV 415


>gi|315924493|ref|ZP_07920714.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Pseudoramibacter
           alactolyticus ATCC 23263]
 gi|315622197|gb|EFV02157.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Pseudoramibacter
           alactolyticus ATCC 23263]
          Length = 444

 Score =  189 bits (481), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 134/456 (29%), Positives = 220/456 (48%), Gaps = 42/456 (9%)

Query: 28  FVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA----EKVYSF 83
           F+ + GC  N  DS +M       GY   +  D A LI++NTC   E A     +K++ +
Sbjct: 8   FISTLGCDKNTVDSEQMAGGLLQAGYRVTDEPDAASLIIVNTCCFIEAAKKESIDKIFEY 67

Query: 84  LGRIRNLKNSRIKEGGDL-LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
           L           K  G+    VVAGC+AQ   +E+ +  P ++  +G      LPE++  
Sbjct: 68  LP---------FKTRGNCECFVVAGCMAQRYAKELRKEIPEIDFFIGVNQIDDLPEVISH 118

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
               K  +   +S              Y + + VTA+L I EGCD  CT+C +P  RG  
Sbjct: 119 QSEEKAFISAHFSAS--------AAPRYLKDKTVTAYLKISEGCDNHCTYCAIPTIRGRH 170

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR+   ++ EA+ L  +GV E+ L+ QN+  + G  L G +   + LL  LSE      
Sbjct: 171 HSRTPEAILAEAKILYSSGVRELILVAQNLTQY-GSDLPGNE-NLASLLTQLSEKIPFKW 228

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R    +P  +++ L+ A    + +  Y  +P+Q   + ILK M R     +  QI D++
Sbjct: 229 IRLLYLYPEGITEELLTAIKHHENICRYFDMPIQHTENEILKRMGRH---IDKAQIYDKV 285

Query: 323 RSVR---PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
           + +R   PD  + +  I GFPGE++  F   +  +  + + +  +F YS   GTP   M 
Sbjct: 286 KLIRKMLPDAVLRTTVIAGFPGESEAQFEEMLADLQTLRFERLGAFAYSREEGTPAYTMA 345

Query: 380 EQVDENVKAERLLCLQKKLREQQ----VSFNDACVGQIIEVLIEK---HGKEKGKLVGRS 432
           +Q+D+ VK  RL    +++ EQQ     + N+A +G+ +EVLI++   +G   G+  G +
Sbjct: 346 DQIDKTVKETRL----RRIYEQQQGITAAANEAMIGKTVEVLIDENQTNGVSIGRTRGEA 401

Query: 433 PWLQ-SVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
           P +   V++   +  +G   KV+I D     L GEL
Sbjct: 402 PEVDCDVLIEQSDLPVGQFFKVKIIDSIEYDLIGEL 437


>gi|225378030|ref|ZP_03755251.1| hypothetical protein ROSEINA2194_03690 [Roseburia inulinivorans DSM
           16841]
 gi|225210031|gb|EEG92385.1| hypothetical protein ROSEINA2194_03690 [Roseburia inulinivorans DSM
           16841]
          Length = 441

 Score =  189 bits (481), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 134/456 (29%), Positives = 222/456 (48%), Gaps = 32/456 (7%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC-HIREKAAEKVYSFL 84
           +    S GC  N+ D+  M  M    G E  N   +AD+I++NTC  I +   E V + L
Sbjct: 2   KLLFVSLGCDKNLVDTEFMLGMLRDDGIEITNDETEADIIIVNTCCFINDAKEESVNTIL 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
                 K   +K      ++V GC+AQ   EEI    P V+ ++G  +Y  + + +  A 
Sbjct: 62  EMAEYKKTGPLK-----ALIVTGCLAQRYKEEIKTEIPEVDAILGTNSYEDIVKAVHEAL 116

Query: 145 FGKRVVDTDYSVEDKFERLSIVDG--GYNRKRGVT-----AFLTIQEGCDKFCTFCVVPY 197
            G             +E    ++G    + KR VT     A+L I EGC+K CT+C++PY
Sbjct: 117 GGTF-----------YENFKTLEGLPSIHTKRSVTTGGHFAYLKIAEGCNKRCTYCIIPY 165

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257
            RG   S  +  ++ +A++L+ NG  E+ L+ Q    + G  L GEK +   LL  L++I
Sbjct: 166 IRGNYRSVPMEDLIGQAKELVANGAKELILVAQETTLY-GIDLYGEK-SLHKLLDELNKI 223

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
            GL  +R    +P ++ + LI +    + +  YL +P+Q  +D +LK M RR +  +  +
Sbjct: 224 NGLFWIRIMYCYPEEIYEDLIDSMIRNEKVCHYLDIPIQHSNDTMLKRMGRRTSHDDLVR 283

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
           II  +R   PDI + +  I GFPGET +     M  ++ + + +  +F YSP  GTP + 
Sbjct: 284 IITHLRERIPDITLRTTLICGFPGETQEIHEELMQFINDMEFDRLGAFTYSPEEGTPAAA 343

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----P 433
             +QVDE +K +    + +   E     N+   G+ + V IE   ++    VGR+    P
Sbjct: 344 FEDQVDEELKKDWQADVMELQEEVIFDKNEEMKGRELYVFIEGQVEDDNAYVGRTYRDAP 403

Query: 434 WLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGEL 467
            +   +  + +  +  GDI+KV++T      L GE+
Sbjct: 404 DIDGYIFINTDETLMTGDIVKVKVTGAYEYDLIGEI 439


>gi|15899133|ref|NP_343738.1| hypothetical protein SSO2380 [Sulfolobus solfataricus P2]
 gi|284173752|ref|ZP_06387721.1| hypothetical protein Ssol98_03728 [Sulfolobus solfataricus 98/2]
 gi|13815682|gb|AAK42528.1| Conserved hypothetical protein [Sulfolobus solfataricus P2]
 gi|261600882|gb|ACX90485.1| RNA modification enzyme, MiaB family [Sulfolobus solfataricus 98/2]
          Length = 421

 Score =  189 bits (481), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 140/449 (31%), Positives = 236/449 (52%), Gaps = 36/449 (8%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +  +V++YGC +N  D+  M  +  S+GY  V + ++AD+I+LNTC +R +  E++    
Sbjct: 2   KNIYVETYGCALNRADTYVMMTLLKSEGYNFVENPENADIIILNTCAVRLETEERM---- 57

Query: 85  GRIRNLKNSRIKEGGDLL--VVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
                    RIKE   L   +VVAGC++ AE   +L  +P  +++ GPQ+  R+ +++ +
Sbjct: 58  -------KQRIKELNTLSKKLVVAGCMSSAEPATVLSIAPNASLI-GPQSVERIVDIV-K 108

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           +   K V++ D        R  I    ++   G  A + + +GC   C+FC+    R   
Sbjct: 109 SEERKIVIEGD--------RALITPRTFD---GKIAIIPVADGCAGNCSFCITKLARRKL 157

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLV 261
            S  L ++V+ AR  I +G  EI L GQ+  A+   GLD G   +  D++  +++I G  
Sbjct: 158 RSYPLREIVNAARDAIQSGAREIELTGQDTAAY---GLDLGGSISLVDVVNKVADIDGDF 214

Query: 262 RLRYTTSHPRD---MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
            +R     P     + D LI+A  +  V   ++HLPVQSG DR+LK MNR++T  EY+++
Sbjct: 215 MIRIGMMTPEQAMRIMDDLIEAIRNPKVY-KFIHLPVQSGDDRVLKLMNRKYTVDEYKEL 273

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           I  IR   P + I++D IVG PGE ++ F  T+ L+ ++ + +     YS R  T  ++M
Sbjct: 274 ISEIRHKIPFVNITTDIIVGHPGEDEEAFNNTLLLMKELRFERIHLAMYSIRPNTRSASM 333

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSV 438
             QV +++K +R+    K   +  +S +   VG    V+  + G+ KG ++GR      V
Sbjct: 334 -PQVPDSIKKKRIQIANKLYEDLALSIHLDYVGSTSRVITTELGR-KGSVIGRLMNYIPV 391

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGEL 467
           V+ S+N  +G    V+IT+     L G L
Sbjct: 392 VIRSENVELGKWYDVKITEASFYDLRGIL 420


>gi|300021843|ref|YP_003754454.1| MiaB-like tRNA modifying enzyme YliG [Hyphomicrobium denitrificans
           ATCC 51888]
 gi|299523664|gb|ADJ22133.1| MiaB-like tRNA modifying enzyme YliG [Hyphomicrobium denitrificans
           ATCC 51888]
          Length = 461

 Score =  189 bits (481), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 149/484 (30%), Positives = 230/484 (47%), Gaps = 52/484 (10%)

Query: 5   IKLIGVAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADL 64
           +K+   A   +   D    P+  FV S GC   + DS R+     ++GY   +  + AD+
Sbjct: 6   VKVNAKARRAAHGSDTAAAPKVGFV-SLGCPKALVDSERIITKLRAEGYMIASDYEGADV 64

Query: 65  IVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIV 124
           +V+NTC   + A ++    +G   N  N R        V+V GC    E   I    P V
Sbjct: 65  VVVNTCGFLDSAKKESLDAIGEAMN-ANGR--------VIVTGCFG-VEENRIRDAHPGV 114

Query: 125 NVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQE 184
             V GP  Y ++ E +          D    + D F  L   +G     R   A+L I E
Sbjct: 115 LAVTGPHQYEQVVEAVH---------DAVPPLHDPFVDLVPPEGLRLTPRHY-AYLKISE 164

Query: 185 GCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA---------- 234
           GC+  C+FC++P  RG   SR  + V+ EA +L++ GV E+ ++ Q+ +A          
Sbjct: 165 GCNNRCSFCIIPALRGDLASRPSNHVMGEAERLVNAGVKELLVISQDTSAYGLDIKYAES 224

Query: 235 -WRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHL 293
            W+G  L   K  F DL  +L ++   VR+ Y   +P    D +I    D  +L PYL +
Sbjct: 225 AWKGAPL---KARFLDLSRALGDLGVWVRMHYVYPYPH--VDDVIPLMADGKIL-PYLDI 278

Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
           P Q  S  +LK+M R     +  + I R R V PD+AI S FIVGFPGET++DF   +D 
Sbjct: 279 PFQHASPAVLKAMRRPAAQEKTAERIRRWREVCPDLAIRSTFIVGFPGETEEDFAFLLDW 338

Query: 354 VDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACV 410
           + + G  +A  FKY P  G   + +   V + VK E   R + +QK +   Q+      +
Sbjct: 339 LKEAGINRAGCFKYEPVEGAKANAIDGAVPDEVKEERWHRFMAVQKDVSSAQLERK---L 395

Query: 411 GQIIEVLIEKHGKEKGKLVGRSPWLQ-----SVVLNS-KNHNIGDIIKVRITDVKISTLY 464
           GQ I+VLI++  ++    +GRS W       +V LN  ++ N GDI++ ++ +     L+
Sbjct: 396 GQTIDVLIDEVDEDGA--IGRSKWDAPEIDGNVFLNGERDVNAGDIVRAKVVEAGDYDLW 453

Query: 465 GELV 468
            E V
Sbjct: 454 AERV 457


>gi|225017551|ref|ZP_03706743.1| hypothetical protein CLOSTMETH_01478 [Clostridium methylpentosum
           DSM 5476]
 gi|224949701|gb|EEG30910.1| hypothetical protein CLOSTMETH_01478 [Clostridium methylpentosum
           DSM 5476]
          Length = 441

 Score =  189 bits (481), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 139/448 (31%), Positives = 224/448 (50%), Gaps = 25/448 (5%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N  D+  +       G+E    +  AD++V+NTC   E A ++    +     L
Sbjct: 9   SLGCPKNQVDAEMLLSNIKRDGFEITADVQQADVVVINTCGFIESAKQESIDSI-----L 63

Query: 91  KNSRIKEGGDL-LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149
           +   +KE G L  VVV GC+A+   EE+ +  P V+VV+G  +   +   +  A  G++V
Sbjct: 64  EFCALKEQGQLKCVVVTGCLAERYQEELAKEIPEVDVVLGIGSNAEIARAITDALDGRKV 123

Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209
            D      DK + L++            A+L I EGCD  CT+C +P  RG   SR L  
Sbjct: 124 SD----FADK-QALALNGERVISTPSYFAYLKIAEGCDNNCTYCAIPAIRGPYRSRKLED 178

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSH 269
           +V+EA  L  +GV E+ ++ Q+   + G  L GE     +LL  L +I G V +R    +
Sbjct: 179 IVEEAEWLASSGVKELIVVAQDTTRY-GSDLYGE-LKLPELLRRLCQIDGFVWIRVLYCY 236

Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329
           P  ++D L+    +   +  Y+ +P+Q  +  +L+ M+RR T  E   ++ R+R   P+I
Sbjct: 237 PEMVTDELLDVLAEEPKMAKYIDIPIQHINSAVLRRMHRRSTREEILSVVQRVRERVPNI 296

Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAE 389
            + +  I GFPGET + F   ++ V +  + +   F YS   GTP + + +Q+DE  KA 
Sbjct: 297 TLRTTLIAGFPGETKEQFEELVEFVKESKFDRLGCFAYSQEEGTPAAKLPDQLDEETKAR 356

Query: 390 R---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVL-- 440
           R   ++  Q+ + E++   N A +G+I++VL+E    E    VGRS    P +  VVL  
Sbjct: 357 RAELVMLEQQTINEER---NRAQLGKIVKVLVEGFDMETCCYVGRSEADAPDIDGVVLFV 413

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
           + K  + GD  +V I D+    L G  V
Sbjct: 414 SEKELSPGDFAEVEIIDILDYDLMGRAV 441


>gi|320355317|ref|YP_004196656.1| MiaB-like tRNA modifying enzyme [Desulfobulbus propionicus DSM
           2032]
 gi|320123819|gb|ADW19365.1| MiaB-like tRNA modifying enzyme [Desulfobulbus propionicus DSM
           2032]
          Length = 444

 Score =  189 bits (481), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 131/441 (29%), Positives = 219/441 (49%), Gaps = 24/441 (5%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +R  + + GC++N ++S      F ++G   V    +AD+ V+NTC +  KA ++    +
Sbjct: 2   KRIAITTLGCKVNQFESAAFASGFEARGCTLVPFQAEADVYVINTCTVTAKAGQQSRQLI 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R+       + E     VVV GC AQ + E +   +     +VG    +    LL  A 
Sbjct: 62  RRV-------LHEHPGARVVVTGCYAQMDPEAVFSLADQPVAIVGNGNKH----LLVEAA 110

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT-AFLTIQEGCDKFCTFCVVPYTRGIEI 203
             +   D    +    E+  I D    R RG T A+L IQ+GCD FC++C+VPYTRG   
Sbjct: 111 LAESSPDLVLLMGRIREKKEICDLPVTRFRGRTRAYLRIQDGCDNFCSYCIVPYTRGRSR 170

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           S  L++++ +    +D G  E+ + G NV  + G  LD  +  +S L     +  GL RL
Sbjct: 171 SLPLTKILAQTAVFVDQGYRELVITGINVGKY-GLDLDEGETIYSLLARLCRDFPGL-RL 228

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R ++  P +++D L+         MP+LH+P+QSG D++L  MNRR+T  E+  +I+R+ 
Sbjct: 229 RLSSIEPTEVNDQLLDLMSGSPNFMPHLHIPLQSGDDQVLARMNRRYTRAEFAAVIERVH 288

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              P   I  D + GFPGET+ +   T  L+  +       F YS R GT  +++ +Q+ 
Sbjct: 289 QALPLATIGCDVLGGFPGETEAEADNTYRLLTDLPVHYLHVFPYSRRPGTLAASLPQQLP 348

Query: 384 ENVKAERLLCLQKKLR-----EQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSV 438
             VK  R+    ++LR     ++Q ++   C G+  +VL+E+   + G L G S     +
Sbjct: 349 GPVKEARV----QRLRGLDAAKRQAAYQANC-GRTHQVLVERRQAKTGLLQGFSENYVPI 403

Query: 439 VLNSKNHNIGDIIKVRITDVK 459
           +    +  I  ++ VR+  V+
Sbjct: 404 LFAGGSGLIRQVVPVRLVAVE 424


>gi|261821225|ref|YP_003259331.1| ribosomal protein S12 methylthiotransferase [Pectobacterium
           wasabiae WPP163]
 gi|261605238|gb|ACX87724.1| MiaB-like tRNA modifying enzyme YliG [Pectobacterium wasabiae
           WPP163]
          Length = 437

 Score =  189 bits (481), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 140/463 (30%), Positives = 229/463 (49%), Gaps = 47/463 (10%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  FV S GC  N+ DS R+     ++GY+ V   DDA+L+++NTC   + A ++    
Sbjct: 4   PRIGFV-SLGCPKNLVDSERILTELRTEGYQVVPRYDDAELVIVNTCGFIDSAVQESLEA 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G   N       E G   V+V GC+   E + I    P V  + GP +Y ++   + + 
Sbjct: 63  IGEALN-------ENGK--VIVTGCLGAKENQ-IREVHPKVLEITGPHSYEQVLSHVHQ- 111

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
                         + F  L + + G        A+L I EGC+  CTFC++P  RG   
Sbjct: 112 -------HVPKPTHNPFTSL-VPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGDLD 163

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLY 252
           SR +  V+DEA++L+D GV E+ ++ Q+ +A           W G+ +   K + + L  
Sbjct: 164 SRPIGSVLDEAKRLVDAGVKELLVISQDTSAYGADVKQRTGFWNGQPV---KTSMASLCE 220

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
            L+ +   VRL Y   +P       + A G +   +PYL +P+Q  S +ILK M R    
Sbjct: 221 QLASLGVWVRLHYVYPYPHVDDVIPLMAEGKI---LPYLDIPLQHASPKILKLMKRPGAV 277

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
               + I R R + PD+ + S FIVGFPGET++DF+  +D + +    +   FK+SP  G
Sbjct: 278 ERTLERIKRWREICPDLTLRSTFIVGFPGETEEDFQMLLDFLQEAKLDRVGCFKFSPVEG 337

Query: 373 TPGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GK 427
              + + +QV E VK E   R + LQ+ +  Q++      +G+ + VLI++  +E   G+
Sbjct: 338 ASANALPDQVPEEVKEERFHRFMQLQQAISTQRLQDK---IGREVLVLIDEIDEEGAIGR 394

Query: 428 LVGRSPWLQ-SVVLNSKNH-NIGDIIKVRITDVKISTLYGELV 468
            +  +P +  +V LN +    +GDI+KV+I       L+G  V
Sbjct: 395 SMADAPEIDGAVYLNGETGVKVGDIVKVKIEHADEYDLWGSRV 437


>gi|255037356|ref|YP_003087977.1| MiaB-like tRNA modifying enzyme YliG [Dyadobacter fermentans DSM
           18053]
 gi|254950112|gb|ACT94812.1| MiaB-like tRNA modifying enzyme YliG [Dyadobacter fermentans DSM
           18053]
          Length = 436

 Score =  189 bits (481), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 137/456 (30%), Positives = 229/456 (50%), Gaps = 35/456 (7%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGY--ERVNSMDDADLIVLNTCHIREKAAEK 79
           IV  +  + + GC  N+ DS  +       G+  +  +  DD+ ++V+NTC   + A E+
Sbjct: 6   IVKNKVNIVTLGCSKNLVDSEVLYTQLKGNGFAVDHESKKDDSQIVVINTCGFIDNAKEE 65

Query: 80  VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL 139
             + + R  + K + + +     V V GC++    +E+    P V+   G      LP L
Sbjct: 66  SINTILRYADAKAAGMVDK----VYVTGCLSHRYKDELSVEIPTVDAWFGTN---ELPRL 118

Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           L       + +  DY  E   ERL      Y       A+L I EGCD+ C+FC +P  R
Sbjct: 119 L-------KTLKADYKHELVGERLLTTPAHY-------AYLKIAEGCDRPCSFCAIPLMR 164

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIK 258
           G  +SRS+  +V EA+ L   G  E+ L+ Q++  +   GLD  +K   SDLL +LS+++
Sbjct: 165 GGHVSRSIEDLVKEAKSLAKRGTKELILIAQDLTYY---GLDIYKKRNLSDLLRNLSDVE 221

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           G+  +R   ++P      ++    +   +  YL +P+QSGS  +LK M R  T  +   +
Sbjct: 222 GIEWIRLQYAYPAGFPMDVLDVMNERSNIAKYLDMPLQSGSTEMLKLMRRGITREKTEAL 281

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           I  IR   PDIA+ +  IVG PGET++ F  T + V+K+ + +  +F+YS    T   +M
Sbjct: 282 IHSIRDKVPDIALRTTLIVGHPGETEELFDETYEFVEKMRFDRLGAFQYSHEDNTHSFSM 341

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPW 434
            + V+  VK ER   + +  +      N A +G+  +VL ++  KE G  +GR    SP 
Sbjct: 342 EDDVEAEVKQERADAIMELQQGISAELNQAKIGKTFKVLFDR--KEGGYFIGRTEFDSPE 399

Query: 435 LQS--VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           + +  +VL S+   +GD  +V++T  +   LYGE++
Sbjct: 400 VDNEVLVLASQYVRLGDYAQVKVTSAEEFDLYGEVI 435


>gi|89891221|ref|ZP_01202728.1| 2-methylthioadenine synthetase [Flavobacteria bacterium BBFL7]
 gi|89516533|gb|EAS19193.1| 2-methylthioadenine synthetase [Flavobacteria bacterium BBFL7]
          Length = 447

 Score =  189 bits (481), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 120/397 (30%), Positives = 204/397 (51%), Gaps = 16/397 (4%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N  ++  +   F  +G+ERV+    AD+ V+NTC + E A ++  S + + + +
Sbjct: 22  TLGCKLNFSETSTIARDFEQEGFERVDFEKRADIYVINTCSVTENADKRFKSIVKKAQQV 81

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
                    D   +  GC AQ + EE L     V++V+G    +++ + L +    K   
Sbjct: 82  NE-------DAFTIAVGCYAQLKPEE-LAAVDGVDLVLGATEKFKITDYLNQ--LSKEEP 131

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
              +S E   +      G Y+      AFL +Q+GCD  CT+C +P  RGI  S +L  V
Sbjct: 132 TQIHSCE--IDEADFYVGSYSIGDRTRAFLKVQDGCDYKCTYCTIPLARGISRSDTLENV 189

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK---CTFSDLLYSLSEIKGLVRLRYTT 267
           ++ AR + + G+ EI L G N+  + GKG  G K    TF DL+++L  + G+ RLR ++
Sbjct: 190 MENARLISEQGIKEIVLTGVNIGDY-GKGEFGNKRHEHTFLDLVHALDTVNGIERLRISS 248

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
             P  + +  I+     +  +P+ H+P+Q+G++ +L  M RR+    Y   + +I+ V P
Sbjct: 249 IEPNLLKNETIEFVSGANAFVPHFHIPLQAGNNELLGKMKRRYNRELYVDRVTKIKEVMP 308

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
           D  I  D IVGFPGETDD F  T + +  +  +    F YS R  T  + M   V + V+
Sbjct: 309 DCCIGVDVIVGFPGETDDHFLDTYNFLSDLNISYLHVFTYSERDNTEAATMEGVVPKKVR 368

Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE 424
           A+R   L+    +++ +F ++ +G+   VL E   +E
Sbjct: 369 AKRSKMLRGLSVKKRRAFYESQLGKTKTVLWEAENRE 405


>gi|15596113|ref|NP_249607.1| hypothetical protein PA0916 [Pseudomonas aeruginosa PAO1]
 gi|107100372|ref|ZP_01364290.1| hypothetical protein PaerPA_01001397 [Pseudomonas aeruginosa PACS2]
 gi|218893115|ref|YP_002441984.1| hypothetical protein PLES_44001 [Pseudomonas aeruginosa LESB58]
 gi|254245200|ref|ZP_04938522.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
 gi|313105799|ref|ZP_07792062.1| hypothetical protein PA39016_000110096 [Pseudomonas aeruginosa
           39016]
 gi|81541685|sp|Q9I541|RIMO_PSEAE RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|9946818|gb|AAG04305.1|AE004525_13 conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
 gi|126198578|gb|EAZ62641.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
 gi|218773343|emb|CAW29155.1| conserved hypothetical protein [Pseudomonas aeruginosa LESB58]
 gi|310878564|gb|EFQ37158.1| hypothetical protein PA39016_000110096 [Pseudomonas aeruginosa
           39016]
          Length = 440

 Score =  189 bits (480), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 150/472 (31%), Positives = 228/472 (48%), Gaps = 64/472 (13%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  FV S GC   + DS R+      +GYE V + +DAD++V+NTC   + A  +    
Sbjct: 6   PKVGFV-SLGCPKALVDSERILTQLRMEGYEVVPTYEDADVVVVNTCGFIDSAKAESLEV 64

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G         I E G   V+V GC+   E   I    P V  V GPQ Y ++       
Sbjct: 65  IGE-------AIAENGK--VIVTGCMG-VEEHAIRDVHPSVLAVTGPQQYEQV------- 107

Query: 144 RFGKRVVDTDYSVEDKFERLSIVD----GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
                V      V  K E   +VD     G        A+L I EGC+  C+FC++P  R
Sbjct: 108 -----VTAVHEVVPPKTEHNPLVDLVPPQGVKLTPRHYAYLKISEGCNHSCSFCIIPSMR 162

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFS 248
           G  +SR +  V+ EA +L+  GV E+ ++ Q+ +A           W G+ +   K    
Sbjct: 163 GKLVSRPVGDVLSEAERLVKAGVKELLVISQDTSAYGVDLKYKTDFWNGQPV---KTRMK 219

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
           +L  +LS +   VRL Y   +P       + A G    L+PYL +P Q  S ++LK+M R
Sbjct: 220 ELCEALSSMGVWVRLHYVYPYPNVDDVIPLMAAGK---LLPYLDIPFQHASPKVLKAMKR 276

Query: 309 RHTAYEYRQI--IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
              A+E + +  I + R + P++ I S FIVGFPGET++DF+  +D + +    +   F+
Sbjct: 277 --PAFEDKTLARIKQWREICPELTIRSTFIVGFPGETEEDFQYLLDWLTEAQLDRVGCFQ 334

Query: 367 YSPRLGTPGSNM-LEQVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422
           YSP  G P + + LE V + VK    ER +  Q+ +   ++      VG+ IEVLI++  
Sbjct: 335 YSPVEGAPANELGLEPVPDEVKQDRWERFMAHQQAISAARLQLK---VGKEIEVLIDEVD 391

Query: 423 KEKGKLVGRSPWLQS------VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           ++    VGRS W  +      V ++S     GD ++VRITD     L+ ELV
Sbjct: 392 EQGA--VGRS-WADAPEIDGNVFVDSDELKPGDKVRVRITDADEYDLWAELV 440


>gi|283833872|ref|ZP_06353613.1| RNA modification enzyme, MiaB family [Citrobacter youngae ATCC
           29220]
 gi|291070543|gb|EFE08652.1| RNA modification enzyme, MiaB family [Citrobacter youngae ATCC
           29220]
          Length = 435

 Score =  189 bits (480), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 138/453 (30%), Positives = 233/453 (51%), Gaps = 40/453 (8%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ DS R+     ++GY+ V S DDAD++++NTC   + A ++    +G   N 
Sbjct: 8   SLGCPKNLVDSERILTELRTEGYDVVPSYDDADMVIVNTCGFIDSAVQESLEAIGEALN- 66

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
                 E G   V+V GC+  A+ ++I    P V  + GP +Y ++ E +       +  
Sbjct: 67  ------ENGK--VIVTGCLG-AKVDQIREVHPKVLEITGPHSYEQVLEHVHHYVPKPK-- 115

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
                  + F+ L + + G        A+L I EGC+  CTFC++P  RG  +SR +  V
Sbjct: 116 ------HNPFQSL-VPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGDLVSRPIGDV 168

Query: 211 VDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYSLSEIKGLVR 262
           + EA++L+D GV EI ++ Q+ +A+      R    +GE  K +  DL   LS++    R
Sbjct: 169 LSEAKRLVDAGVKEILVISQDTSAYGVDVKHRTGFHNGEPVKTSMVDLCEQLSKLGIWTR 228

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           L Y   +P       + A G +   +PYL +P+Q  S RILK M R  +       I + 
Sbjct: 229 LHYVYPYPHVDDVIPLMAEGKI---LPYLDIPLQHASPRILKLMKRPGSVDRQLARIKQW 285

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R + P++ + S FIVGFPGET++DF+  +D + +    +   FKYSP  G   +++ +Q+
Sbjct: 286 REICPELTLRSTFIVGFPGETEEDFQMLLDFLKEARLDRVGCFKYSPVEGAGANDLPDQI 345

Query: 383 DENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPWLQ- 436
            E VK E   R + LQ+++  +++      VG+ I V++++  +E   G+ +  +P +  
Sbjct: 346 PEEVKEERWNRFMQLQQQISAERLQEK---VGREILVIVDEVDEEGAIGRSMADAPEIDG 402

Query: 437 SVVLNSKNH-NIGDIIKVRITDVKISTLYGELV 468
           +V LN +     GDII+V++ +     L+G  V
Sbjct: 403 AVYLNGETQVKPGDIIRVKVENADEYDLWGTRV 435


>gi|116048839|ref|YP_792360.1| hypothetical protein PA14_52420 [Pseudomonas aeruginosa UCBPP-PA14]
 gi|122257946|sp|Q02I76|RIMO_PSEAB RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|115584060|gb|ABJ10075.1| conserved hypothetical protein [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 440

 Score =  189 bits (480), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 150/472 (31%), Positives = 228/472 (48%), Gaps = 64/472 (13%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  FV S GC   + DS R+      +GYE V + +DAD++V+NTC   + A  +    
Sbjct: 6   PKVGFV-SLGCPKALVDSERILTQLRMEGYEVVPTYEDADVVVVNTCGFIDSAKAESLEV 64

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G         I E G   V+V GC+   E   I    P V  V GPQ Y ++       
Sbjct: 65  IGE-------AIAENGK--VIVTGCMG-VEEHTIRDVHPSVLAVTGPQQYEQV------- 107

Query: 144 RFGKRVVDTDYSVEDKFERLSIVD----GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
                V      V  K E   +VD     G        A+L I EGC+  C+FC++P  R
Sbjct: 108 -----VTAVHEVVPPKTEHNPLVDLVPPQGVKLTPRHYAYLKISEGCNHSCSFCIIPSMR 162

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFS 248
           G  +SR +  V+ EA +L+  GV E+ ++ Q+ +A           W G+ +   K    
Sbjct: 163 GKLVSRPVGDVLSEAERLVKAGVKELLVISQDTSAYGVDLKYKTDFWNGQPV---KTRMK 219

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
           +L  +LS +   VRL Y   +P       + A G    L+PYL +P Q  S ++LK+M R
Sbjct: 220 ELCEALSSMGVWVRLHYVYPYPNVDDVIPLMAAGK---LLPYLDIPFQHASPKVLKAMKR 276

Query: 309 RHTAYEYRQI--IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
              A+E + +  I + R + P++ I S FIVGFPGET++DF+  +D + +    +   F+
Sbjct: 277 --PAFEDKTLARIKQWREICPELTIRSTFIVGFPGETEEDFQYLLDWLTEAQLDRVGCFQ 334

Query: 367 YSPRLGTPGSNM-LEQVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422
           YSP  G P + + LE V + VK    ER +  Q+ +   ++      VG+ IEVLI++  
Sbjct: 335 YSPVEGAPANELGLEPVPDEVKQDRWERFMAHQQAISAARLQLK---VGKEIEVLIDEVD 391

Query: 423 KEKGKLVGRSPWLQS------VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           ++    VGRS W  +      V ++S     GD ++VRITD     L+ ELV
Sbjct: 392 EQGA--VGRS-WADAPEIDGNVFVDSDELKPGDKVRVRITDADEYDLWAELV 440


>gi|26553616|ref|NP_757550.1| hypothetical protein MYPE1630 [Mycoplasma penetrans HF-2]
 gi|26453622|dbj|BAC43954.1| conserved hypothetical protein [Mycoplasma penetrans HF-2]
          Length = 442

 Score =  189 bits (480), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 127/445 (28%), Positives = 228/445 (51%), Gaps = 21/445 (4%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           F + + GC++N+++S  + +     G   V     AD+ ++NTC +  KA  K      +
Sbjct: 15  FAIHTLGCKVNLFESNVIRNDLLLNGLVEVPFDAQADVYIINTCSVTNKADSK-----SK 69

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER-ARF 145
           +   K SR  + G  +VVVAGC++Q   +  L +   +++ +G +  Y + +LL   ++ 
Sbjct: 70  LYIRKASRTNKKG--IVVVAGCMSQINKD--LMKELKIDIQIGNKYKYSIYDLLTNYSKN 125

Query: 146 GKRVVDTDYSVEDK-FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            ++++  +  +++K FE+    +   + K    AF+ IQ+GC+  C++C++P+TRG + S
Sbjct: 126 KEKILKIENLLKEKVFEK----NESISFKENTRAFIKIQDGCNFMCSYCIIPFTRGKQRS 181

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
             L+ +V+E   L+D G  EI L G N   +     D +K  F DLL +++EIK   R+R
Sbjct: 182 NDLNTIVNEVHSLVDQGYKEIVLTGVNTAGF----FDQDKNNFYDLLVAINEIKKDFRVR 237

Query: 265 YTTSHPRDMSDCLIK-AHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
            ++  P  ++D ++     +      + H+ +QSGSD +L  MNRR+   +Y ++I +IR
Sbjct: 238 ISSVEPFQITDEIVNLIASNPKRFCQHWHICLQSGSDNVLNKMNRRYLTSQYEELIKKIR 297

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           S+ P+   ++D+IVGFP E+  D   +M+ + KI +     F YS R GT  S  ++ V 
Sbjct: 298 SINPNTLFTTDYIVGFPSESHQDHLDSMEFLKKIKFFDMHIFPYSKREGTKSS-TIKDVH 356

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
           +  K ER   +       + S   + + + +EV+ E   + +    G S     V + S 
Sbjct: 357 DATKKERFKNVAAFNFATKFSILKSMLNKELEVIFEHKNENEQYYSGYSSEYCRVYVESN 416

Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468
                 I KV+I  V    L G +V
Sbjct: 417 TPLENKIYKVKIEKVLSDGLLGTIV 441


>gi|315299417|gb|EFU58669.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli MS 16-3]
          Length = 441

 Score =  189 bits (480), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 143/462 (30%), Positives = 235/462 (50%), Gaps = 45/462 (9%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  FV S GC  N+ DS R+     ++GY+ V S DDAD++++NTC   + A ++    
Sbjct: 8   PKIGFV-SLGCPKNLVDSERILTELRTEGYDVVPSYDDADMVIVNTCGFIDSAVQESLEA 66

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G   N       E G   V+V GC+   E ++I    P V  + GP +Y ++ E +   
Sbjct: 67  IGEALN-------ENGK--VIVTGCLGAKE-DQIREVHPKVLEITGPHSYEQVLEHVHH- 115

Query: 144 RFGKRVVDTDYSVEDKFER-LSIV-DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
                     Y  + K    LS+V + G        A+L I EGC+  CTFC++P  RG 
Sbjct: 116 ----------YVPKPKHNPFLSLVPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGD 165

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYS 253
            +SR + +V+ EA++L+D GV EI ++ Q+ +A+      R    +GE  K +   L   
Sbjct: 166 LVSRPIGEVLSEAKRLVDAGVKEILVISQDTSAYGVDVKHRTGFHNGEPVKTSMVSLCEQ 225

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
           LS++    RL Y   +P       ++A G +   +PYL +P+Q  S RILK M R  +  
Sbjct: 226 LSKLGIWTRLHYVYPYPHVDDVIPLRAEGKI---LPYLDIPLQHASPRILKLMKRPGSVD 282

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
                I + R + P++ + S FIVGFPGET++DF+  +D + +    +   FKYSP  G 
Sbjct: 283 RQLARIKQWRKICPELTLRSTFIVGFPGETEEDFQMLLDFLKEARLDRVGCFKYSPVEGA 342

Query: 374 PGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKL 428
             + + +QV E VK E   R + LQ+++  +++      VG+ I V+I++  +E   G+ 
Sbjct: 343 DANALPDQVPEEVKEERWNRFMQLQQQISAERLQEK---VGREILVIIDEVDEEGAIGRS 399

Query: 429 VGRSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468
           +  +P +   V  +   N+  GDI++V++       L+G  V
Sbjct: 400 MADAPEIDGAVYLNGETNVKPGDILRVKVEHADEYDLWGSRV 441


>gi|301155233|emb|CBW14698.1| predicted SAM-dependent methyltransferase [Haemophilus
           parainfluenzae T3T1]
          Length = 453

 Score =  189 bits (480), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 144/467 (30%), Positives = 235/467 (50%), Gaps = 52/467 (11%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
            P   FV S GC  N+ DS R+     + GY  V S ++ DL+++NTC   + A ++   
Sbjct: 13  TPNIGFV-SLGCPKNLVDSERILTELRTDGYNIVPSYENVDLVIVNTCGFIDSAVQESLE 71

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +G         ++E G   V+V GC+   E ++I +  P V  V GP +Y  +      
Sbjct: 72  AIGEA-------LEENGR--VIVTGCLGAKE-DQIRQVHPKVLEVSGPHSYEAV-----M 116

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           A+  K V   +++         +   G        A+L I EGCD  CTFC++P  RG  
Sbjct: 117 AQVHKYVPKPEHNPYTSL----VPKQGVKLTPKHYAYLKISEGCDHRCTFCIIPSLRGDL 172

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-----RGKGLDGEKCTF-------SDL 250
            SRS++QV+DEA++L D GV E+ ++ Q+ +A+     R +G  G K  F       +DL
Sbjct: 173 ESRSITQVLDEAKRLADAGVKELLVVSQDTSAYAMDTQRKEG--GVKTAFWNGMPIKNDL 230

Query: 251 LYSLSEIKGL---VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307
           +    ++  L   VRL Y   +P       + A G   +L+PYL +P+Q  S +ILK+M 
Sbjct: 231 MTLCKQLGKLGIWVRLHYVYPYPHVDDLIPLMAEG---LLLPYLDIPLQHASPKILKAMK 287

Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           R        + I + R + PD+ + S FIVGFPGET++DF+  +D + +    +   FK+
Sbjct: 288 RPGKIDRTLERIKQWREICPDLTLRSTFIVGFPGETEEDFQMLLDFLKEAQLDRVGCFKF 347

Query: 368 SPRLGTPGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE 424
           SP  G P + M +QV E+VK E   R + LQ+++  +++      +GQ ++V++++   E
Sbjct: 348 SPVEGAPATEMADQVPEDVKEERFHRFMQLQQEISAERLKQK---IGQTLDVIVDEIDDE 404

Query: 425 K--GKLVGRSPWLQSVV----LNSKNHNIGDIIKVRITDVKISTLYG 465
              G+    +P +  +V    L+     +G+ IKV IT      L+G
Sbjct: 405 GIIGRTKADAPEVDGLVYIENLSGTPVKVGEFIKVTITHSDEYDLWG 451


>gi|237730814|ref|ZP_04561295.1| Fe-S oxidoreductase 1 [Citrobacter sp. 30_2]
 gi|226906353|gb|EEH92271.1| Fe-S oxidoreductase 1 [Citrobacter sp. 30_2]
          Length = 435

 Score =  189 bits (480), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 138/453 (30%), Positives = 233/453 (51%), Gaps = 40/453 (8%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ DS R+     ++GY+ V S DDAD++++NTC   + A ++    +G   N 
Sbjct: 8   SLGCPKNLVDSERILTELRTEGYDVVPSYDDADMVIVNTCGFIDSAVQESLEAIGEALN- 66

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
                 E G   V+V GC+  A+ ++I    P V  + GP +Y ++ E +       +  
Sbjct: 67  ------ENGK--VIVTGCLG-AKVDQIREVHPKVLEITGPHSYEQVLEHVHHYVPKPK-- 115

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
                  + F+ L + + G        A+L I EGC+  CTFC++P  RG  +SR +  V
Sbjct: 116 ------HNPFQSL-VPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGDLVSRPIGDV 168

Query: 211 VDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYSLSEIKGLVR 262
           + EA++L+D GV EI ++ Q+ +A+      R    +GE  K +  DL   LS++    R
Sbjct: 169 LSEAKRLVDAGVKEILVISQDTSAYGVDVKHRTGFHNGEPVKTSMVDLCEQLSKLGIWTR 228

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           L Y   +P       + A G +   +PYL +P+Q  S RILK M R  +       I + 
Sbjct: 229 LHYVYPYPHVDDVIPLMAEGKI---LPYLDIPLQHASPRILKLMKRPGSVDRQLARIKQW 285

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R + P++ + S FIVGFPGET++DF+  +D + +    +   FKYSP  G   +++ +Q+
Sbjct: 286 REICPELTLRSTFIVGFPGETEEDFQMLLDFLKEARLDRVGCFKYSPVEGAGANDLPDQI 345

Query: 383 DENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPWLQ- 436
            E VK E   R + LQ+++  +++      VG+ I V++++  +E   G+ +  +P +  
Sbjct: 346 PEEVKEERWNRFMQLQQQISAERLQEK---VGREILVIVDEVDEEGAIGRSMADAPEIDG 402

Query: 437 SVVLNSKNH-NIGDIIKVRITDVKISTLYGELV 468
           +V LN +     GDII+V++ +     L+G  V
Sbjct: 403 AVYLNGETKVKPGDIIRVKVENADEYDLWGTRV 435


>gi|327539767|gb|EGF26370.1| SSU ribosomal protein S12P methylthiotransferase [Rhodopirellula
           baltica WH47]
          Length = 476

 Score =  189 bits (480), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 134/427 (31%), Positives = 223/427 (52%), Gaps = 47/427 (11%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R+ V S GC  N+ D+ +M     + GY  V+S+D AD +V+NTC   + A ++  + + 
Sbjct: 32  RYAVVSLGCPKNLVDTEQMLGRLDADGYRMVDSVDGADFVVVNTCGFIDSARDESMAAID 91

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +  LK    ++G    VVV GC+A+ + +++L+  P ++ +VG               F
Sbjct: 92  EMLALK----RDGKLRNVVVTGCLAERQQDKLLQARPDIDALVG--------------VF 133

Query: 146 GKR----VVDTDYS-VEDK---FERLSIVDGGYNRKRGVT----AFLTIQEGCDKFCTFC 193
           G+     VVD  YS ++++   F+  ++       +  VT    A+L I EGCD+ CTFC
Sbjct: 134 GRNDIVSVVDELYSGLQEQRTIFKPAAVNPLSDAMRSAVTPRHFAYLKISEGCDRLCTFC 193

Query: 194 VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD--GEKCTFSDLL 251
            +P  RG   S+ + Q++DEA++L D+GV E+ ++ Q+   +   G+D  GE    + LL
Sbjct: 194 AIPKMRGKHFSKPIEQIIDEAKRLGDSGVREVVIVAQDTTYY---GMDRYGEP-RLNQLL 249

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
             L +I+ +  +R    +P  + D LI        ++PY+ +P+Q  SD++LK M R+ T
Sbjct: 250 KELDKIESIDWIRLMYFYPMYIDDALIDTLASAKRIVPYIDMPLQHASDKMLKRMARKTT 309

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
                 I+ ++RS    + + +  I GFPGET++DF   MD V +  +     F YS   
Sbjct: 310 RSLQTDIVQKLRSRIDSLVMRTTMITGFPGETEEDFVELMDFVQESRFENLGVFTYSIEE 369

Query: 372 GTPGSNMLEQVDENVKAER---LLCLQKKLREQQVSF--NDACVGQIIEVLIEKHGKEKG 426
            TP + +  +VD  V A R   L+ LQ     QQ++F  ND+ VG   EVLI+    E+ 
Sbjct: 370 DTPAARLPNRVDPEVAARRRDDLMELQ-----QQIAFDWNDSRVGGTEEVLIDAEMPEQD 424

Query: 427 KL-VGRS 432
            + +GR+
Sbjct: 425 NVFIGRT 431


>gi|123967655|ref|YP_001008513.1| Fe-S oxidoreductase [Prochlorococcus marinus str. AS9601]
 gi|238066469|sp|A2BNP5|RIMO_PROMS RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|123197765|gb|ABM69406.1| possible Fe-S oxidoreductase [Prochlorococcus marinus str. AS9601]
          Length = 454

 Score =  189 bits (479), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 135/455 (29%), Positives = 238/455 (52%), Gaps = 44/455 (9%)

Query: 33  GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92
           GC+ N+ D+  M+ +   +GYE  ++++DA+++V+NTC   E A E+    + +I    N
Sbjct: 22  GCEKNLVDTEHMQGLLDKEGYEVDSNINDANVVVVNTCSFIETAREES---IRKILEYTN 78

Query: 93  SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDT 152
               +G +  V+VAGC+AQ   +E++R  P +  +VG   Y ++ ++L+R   G+ V + 
Sbjct: 79  ----QGKE--VIVAGCMAQHFKDELIREIPEIKGLVGTGDYQKIAKVLDRVEQGEIVNEV 132

Query: 153 ----DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
               ++  +++  R   VD     K    A+L I EGC+  C FC++P  RG + SR++ 
Sbjct: 133 SKIPEFIADEEMPRF--VD-----KNKFVAYLRIAEGCNYNCAFCIIPKLRGPQRSRTIE 185

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK-GLVRLRYTT 267
            +V EA+ L   G+ EI L+ Q +    G+ + G K + + LL  LS++    +R+ Y  
Sbjct: 186 SIVSEAKSLAKKGIQEIILISQ-ITTNYGQDIYG-KPSLAKLLNELSKVSIPWIRIHY-- 241

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
           ++P  ++D +I+A  D   ++PY  LP+Q     +LKSMNR   A     I+++IR   P
Sbjct: 242 AYPTGLTDEVIRAFKDSKNIVPYFDLPLQHSHPDVLKSMNRPWQASLNESILEKIREEIP 301

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
              + +  IVGFPGE  + F   +  +D+  +     F +SP  GT   ++  +V   V 
Sbjct: 302 SAVLRTSLIVGFPGEKKEHFEHLLQFLDRHKFDHVGVFIFSPEEGTTAFHLPNKVSLEVA 361

Query: 388 AER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVL 440
             R   ++ +Q+ + + +   N   VG  +++L+EK   +  +L+GRS    P +   V+
Sbjct: 362 EARKDNVISVQQNISKDK---NQTYVGSKMKILVEKIS-DNNELIGRSYNFAPEIDGTVI 417

Query: 441 NS-------KNHNIGDIIKVRITDVKISTLYGELV 468
            S       KN+ IG  ++  IT      LYGE++
Sbjct: 418 LSVKDKIDLKNY-IGKFVEANITFADEYDLYGEII 451


>gi|300854512|ref|YP_003779496.1| putative MiaB-like tRNA modifying enzyme [Clostridium ljungdahlii
           DSM 13528]
 gi|300434627|gb|ADK14394.1| putative MiaB-like tRNA modifying enzyme [Clostridium ljungdahlii
           DSM 13528]
          Length = 440

 Score =  189 bits (479), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 140/445 (31%), Positives = 228/445 (51%), Gaps = 30/445 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R  + S GC  N  DS  M     +Q Y  V+    AD+I++NTC   E A ++    + 
Sbjct: 5   RVGLISLGCDKNRLDSEVMLSNL-NQEYSLVHDPKLADVIIINTCGFIESAKQESIDTI- 62

Query: 86  RIRNLKNSRIKEGGDL-LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA- 143
               L+ S+ KE  +  L+VV GC+AQ  G+E++   P +++++G   Y +L E + +  
Sbjct: 63  ----LEMSQYKEKFNCKLIVVTGCLAQRYGKELMELLPEIDIMLGVNDYDKLNETIRKCI 118

Query: 144 -RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
                R+ + DYS  +  E   I+          TA+L I EGCD  CT+C++P  RG  
Sbjct: 119 ETDNSRIYNCDYSDSNINEGKRILTTS-----TYTAYLRIAEGCDNHCTYCIIPKIRGKY 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR++  +++E   L + GV EI L+ Q+   + G  + G+K    +L+  +S+I  +  
Sbjct: 174 RSRTIENIINECNDLANQGVKEIILIAQDTTRY-GIDIYGKK-MLPELIQKISKINEIEW 231

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R    +P +++D +I      D +  Y+ +P+Q  SD ILK M RR    +  + ID++
Sbjct: 232 IRLLYCYPEELTDEIINEISMNDKVCKYIDIPIQHISDSILKLMGRRGRKLDIIENIDKL 291

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+    IAI +  IVGFPGET+++F    D V  + +     FKYS   GT  + M  QV
Sbjct: 292 RARAKGIAIRTTIIVGFPGETEENFEELKDFVSTMKFDNLGVFKYSREEGTAAAEMKNQV 351

Query: 383 DENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWL 435
            E +K+ R   L+ LQK++     S N + +G   +V++E  GK+     GRS    P +
Sbjct: 352 PEEIKSAREGELMVLQKQV---MTSINKSKIGSTYKVIVE--GKKGELWYGRSYEMAPDI 406

Query: 436 QSVVL--NSKNHNIGDIIKVRITDV 458
             V+     K   IG ++ V+IT +
Sbjct: 407 DGVIYIKCKKTLKIGTMVNVKITHI 431


>gi|296390731|ref|ZP_06880206.1| ribosomal protein S12 methylthiotransferase [Pseudomonas aeruginosa
           PAb1]
          Length = 440

 Score =  189 bits (479), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 150/472 (31%), Positives = 228/472 (48%), Gaps = 64/472 (13%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  FV S GC   + DS R+      +GYE V + +DAD++V+NTC   + A  +    
Sbjct: 6   PKVGFV-SLGCPKALVDSERILTQLRMEGYEVVPTYEDADVVVVNTCGFIDSAKAESLEV 64

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G         I E G   V+V GC+   E   I    P V  V GPQ Y ++       
Sbjct: 65  IGE-------AIAENGK--VIVTGCMG-VEEHAIRDVHPSVLAVTGPQQYEQV------- 107

Query: 144 RFGKRVVDTDYSVEDKFERLSIVD----GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
                V      V  K E   +VD     G        A+L I EGC+  C+FC++P  R
Sbjct: 108 -----VTAVHEVVPPKTEHNPLVDLVPPQGVKLTPRHYAYLKISEGCNHSCSFCIIPSMR 162

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFS 248
           G  +SR +  V+ EA +L+  GV E+ ++ Q+ +A           W G+ +   K    
Sbjct: 163 GKLVSRPVGDVLSEAERLVKAGVKELLVISQDTSAYGVDLKYKTDFWNGQPV---KTRMK 219

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
           +L  +LS +   VRL Y   +P       + A G    L+PYL +P Q  S ++LK+M R
Sbjct: 220 ELCEALSSMGVWVRLHYVYPYPNVDDVIPLMAGGK---LLPYLDIPFQHASPKVLKAMKR 276

Query: 309 RHTAYEYRQI--IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
              A+E + +  I + R + P++ I S FIVGFPGET++DF+  +D + +    +   F+
Sbjct: 277 --PAFEDKTLARIKQWREICPELTIRSTFIVGFPGETEEDFQYLLDWLTEAQLDRVGCFQ 334

Query: 367 YSPRLGTPGSNM-LEQVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422
           YSP  G P + + LE V + VK    ER +  Q+ +   ++      VG+ IEVLI++  
Sbjct: 335 YSPVEGAPANELGLEPVPDEVKQDRWERFMAHQQAISAARLQLK---VGKEIEVLIDEVD 391

Query: 423 KEKGKLVGRSPWLQS------VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           ++    VGRS W  +      V ++S     GD ++VRITD     L+ ELV
Sbjct: 392 EQGA--VGRS-WADAPEIDGNVFVDSDELKPGDKVRVRITDADEYDLWAELV 440


>gi|237737741|ref|ZP_04568222.1| Fe-S oxidoreductase [Fusobacterium mortiferum ATCC 9817]
 gi|229419621|gb|EEO34668.1| Fe-S oxidoreductase [Fusobacterium mortiferum ATCC 9817]
          Length = 432

 Score =  189 bits (479), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 126/440 (28%), Positives = 234/440 (53%), Gaps = 17/440 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +R    + GC++N Y++  +++    +GY      D+AD+ ++N+C +   A  K  + L
Sbjct: 5   KRVAFYTLGCKVNQYETESIKNQLLQKGYTETAFEDEADIYIVNSCTVTSVADRKTRNML 64

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R + + N   K      V+V GC AQ   +E+L    I + V+G +    +   +E   
Sbjct: 65  RRAKKV-NPHSK------VIVTGCYAQTNSKELLEMEDI-DYVIGNKYKKGIVNFIEDIE 116

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT-AFLTIQEGCDKFCTFCVVPYTRGIEI 203
              R +D     ++ F+     +  +   R ++ A++ IQ+GC+ FC++C +P+ RG   
Sbjct: 117 --NRTMDR-LKNDNIFDEYEYTEYEFATLREMSRAYVKIQDGCNNFCSYCKIPFARGRSR 173

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR    ++ E  KL++ G  EI L+G N+ A+ G+ L+ E   F DLL  + ++KGL R+
Sbjct: 174 SRKKENILKEIEKLVNEGFKEIILIGINLGAY-GEDLE-EDIDFEDLLEKILQVKGLERV 231

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R  + +P  +SD  +        LMP+LH+ +QS  D +LK M R++ +    + + +++
Sbjct: 232 RIGSVYPDKISDRFVDMFK-YKNLMPHLHISLQSCDDTVLKMMKRKYGSDLIEERLLKLK 290

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           +   ++  ++D IVGFPGE+++ F+ + +L++KIG++    F+YS R  T  S +  ++D
Sbjct: 291 NSVGNMEYTADIIVGFPGESEEMFQNSYNLIEKIGFSGLHIFQYSDRENTVASRLENKID 350

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
             VK ER   L++  +E  +   +  +G+ +++LIE+     G L G S     V +   
Sbjct: 351 SKVKKERADRLEELKKEMAIIERENYIGKSLKILIEEEI--DGYLYGYSENYLRVKVKGD 408

Query: 444 NHNIGDIIKVRITDVKISTL 463
              I +II+V+IT ++   L
Sbjct: 409 KKMINEIIEVKITSLEKELL 428


>gi|145298336|ref|YP_001141177.1| ribosomal protein S12 methylthiotransferase [Aeromonas salmonicida
           subsp. salmonicida A449]
 gi|238065281|sp|A4SKK7|RIMO_AERS4 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|142851108|gb|ABO89429.1| Fe-S oxidoreductases family 1 [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 442

 Score =  189 bits (479), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 152/461 (32%), Positives = 232/461 (50%), Gaps = 41/461 (8%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
            P+  FV S GC  N+ DS R+     ++GY+ V S DDA+L+V+NTC   + A ++   
Sbjct: 7   APKVGFV-SLGCPKNLVDSERILTQLRTEGYDVVPSYDDAELVVVNTCGFIDSAVQESLE 65

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +G         + E G   V+V GC+   E + I    P V  + GP  Y    E+L  
Sbjct: 66  AIGEA-------LAENGK--VIVTGCLGAKENQ-IREIHPKVLEITGPHAYE---EVL-- 110

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
               K V    +   + F  L    G     R   A+L I EGC+  CTFC++P  RG  
Sbjct: 111 GHVHKYVAKPTH---NPFTSLVPAHGVKLTPRHY-AYLKISEGCNHRCTFCIIPSMRGDL 166

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYSL 254
           +SR + +V+ EA++L + GV EI ++ Q+ +A+      R    DG   K +   L   L
Sbjct: 167 VSRPIGEVLAEAKRLKEAGVKEILVISQDTSAYGVDVKHRTGFYDGMPVKTSMVALCEEL 226

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
           +++   VRL Y   +P    D +I    D  VL PYL +P+Q  S RILK M R  T   
Sbjct: 227 AKLDIWVRLHYVYPYPH--VDDVIPLMRDGKVL-PYLDIPLQHASPRILKLMKRPGTVER 283

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
             + I + R + P+I + S FIVGFPGET+++F+  +D +DK    +   FKYSP  G  
Sbjct: 284 TLERIQKWREICPEITLRSTFIVGFPGETEEEFQMLLDFIDKAELDRVGCFKYSPVEGAK 343

Query: 375 GSNMLEQVDENVKAERLLCLQKKLR-EQQVSFNDAC--VGQIIEVLIEKHGKE--KGKLV 429
            + + + V E+V+ ER    Q+ +  +QQVS       VG+ + VLI++  +E   G+  
Sbjct: 344 ANELPDPVPEDVQEER---FQRFMELQQQVSIRKLARKVGKEMTVLIDEVDEEGATGRSF 400

Query: 430 GRSPWLQSVV-LNSKNH-NIGDIIKVRITDVKISTLYGELV 468
             +P +  +V LN +     GD++KVRI +     L+  L+
Sbjct: 401 ADAPEIDGLVYLNGETDLKPGDLVKVRIDEADEYDLWASLI 441


>gi|253688060|ref|YP_003017250.1| MiaB-like tRNA modifying enzyme YliG [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|251754638|gb|ACT12714.1| MiaB-like tRNA modifying enzyme YliG [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 442

 Score =  189 bits (479), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 140/463 (30%), Positives = 228/463 (49%), Gaps = 47/463 (10%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  FV S GC  N+ DS R+     ++GY+ V   DDA+L+++NTC   + A ++    
Sbjct: 9   PRIGFV-SLGCPKNLVDSERILTELRTEGYQVVPRYDDAELVIVNTCGFIDSAVQESLEA 67

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G   N       E G   V+V GC+   E + I    P V  + GP +Y ++   + + 
Sbjct: 68  IGEALN-------ENGK--VIVTGCLGAKENQ-IREVHPKVLEITGPHSYEQVLSHVHQY 117

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
                         + F  L + + G        A+L I EGCD  CTFC++P  RG   
Sbjct: 118 --------VPKPTHNPFTSL-VPEQGVKLTPRHYAYLKISEGCDHRCTFCIIPSMRGDLD 168

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLY 252
           SR +  V+DEA++L+D GV E+ ++ Q+ +A           W G+ +   K +   L  
Sbjct: 169 SRPIGSVLDEAKRLVDAGVKELLVISQDTSAYGADVKQRTGFWNGQPV---KTSMVSLCE 225

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
            L+ +   VRL Y   +P       + A G +   +PYL +P+Q  S +ILK M R    
Sbjct: 226 QLASLGVWVRLHYVYPYPHVDDVIPLMAEGKI---LPYLDIPLQHASPKILKLMKRPGAV 282

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
               + I R R + PD+ + S FIVGFPGET++DF+  +D + +    +   FK+SP  G
Sbjct: 283 ERTLERIKRWREICPDLTLRSTFIVGFPGETEEDFQMLLDFLKEAKLDRVGCFKFSPVEG 342

Query: 373 TPGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GK 427
              + + +QV E VK E   R + LQ+ +  Q++      +G+ + VLI++  +E   G+
Sbjct: 343 AAANALPDQVPEEVKEERFHRFMQLQQAISAQRLQDK---IGREVLVLIDEIDEEGAIGR 399

Query: 428 LVGRSPWLQ-SVVLNSKNH-NIGDIIKVRITDVKISTLYGELV 468
            +  +P +  +V LN +    +GDI+KV++       L+G  V
Sbjct: 400 SMADAPEIDGAVYLNGETGVKVGDIVKVKVEHADEYDLWGSRV 442


>gi|83592518|ref|YP_426270.1| MiaB-like tRNA modifying enzyme [Rhodospirillum rubrum ATCC 11170]
 gi|83575432|gb|ABC21983.1| MiaB-like tRNA modifying enzyme [Rhodospirillum rubrum ATCC 11170]
          Length = 441

 Score =  189 bits (479), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 139/468 (29%), Positives = 227/468 (48%), Gaps = 42/468 (8%)

Query: 10  VAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNT 69
           +A   +  +D    P    + ++GC++N Y+S  M +     G         +D I++NT
Sbjct: 6   LAPPTADAIDDNASPGGPRIVTFGCRLNTYESEVMREQAAKAGL--------SDAIIVNT 57

Query: 70  CHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG 129
           C +  +A  +    + R+R       +E  +  ++V GC AQ +  +     P V+ V+G
Sbjct: 58  CAVTREAERQARQTIRRLR-------RENPETRLIVTGCGAQLD-PKGWGAMPEVDQVLG 109

Query: 130 ------PQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQ 183
                  ++Y  L   L+     K +VD   +V +    L +V G   R R   AF+ +Q
Sbjct: 110 NEEKLKAESYRPLAGGLDLGAPEKILVDDIMTVRETA--LHLVGGFEGRAR---AFVQVQ 164

Query: 184 EGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
           +GCD  CTFC++P+ RG   S  + ++VD+ R L+  G  E+ L G ++ A+ G  L G 
Sbjct: 165 QGCDHRCTFCIIPFARGNSRSVPMGRIVDQIRALVAAGYREVVLTGVDITAY-GPDLPGA 223

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
                 +   L  +  L RLR ++  P ++ + L+        L+ +LHL VQ+G+D IL
Sbjct: 224 PSLGQMVRRLLRAVPDLPRLRLSSLDPVEVDEDLLALVASEPRLLAHLHLSVQAGADLIL 283

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           K M RRH   +   +  R+R++RP +A+ +D IVGFP ET++ F  ++ LV++ G     
Sbjct: 284 KRMKRRHLRDDVIALAQRLRTLRPGMALGADIIVGFPTETEEHFAQSLALVEEAGLTHLH 343

Query: 364 SFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK 423
            F YSPR GTP + ++ QVD+ V  +R   L++       +     VG I  VLIE+ G+
Sbjct: 344 VFPYSPRPGTPAA-LMPQVDKAVVKDRARRLREAGEAALAAHRAVLVGGIDHVLIERPGE 402

Query: 424 EKGKL---VGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
             G+    V   P L            G I+ VR+   +   L GE V
Sbjct: 403 GHGETFVPVSVDPALTP----------GSIVPVRLRAGEGGHLIGEAV 440


>gi|333006632|gb|EGK26131.1| RNA modification enzyme, MiaB family protein [Shigella flexneri
           VA-6]
          Length = 441

 Score =  189 bits (479), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 144/462 (31%), Positives = 234/462 (50%), Gaps = 45/462 (9%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  FV S GC  N+ DS R+     ++GY+ V S DDAD++++NTC   + A ++    
Sbjct: 8   PKIGFV-SLGCPKNLVDSERILTELRTEGYDVVPSYDDADMVIVNTCGFIDSAVQESLEA 66

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G   N       E G   V+V GC+   E ++I    P V  + GP +Y ++ E +   
Sbjct: 67  IGEALN-------ENGK--VIVTGCLGAKE-DQIREVHPKVLEITGPHSYEQVLEHVHH- 115

Query: 144 RFGKRVVDTDYSVEDKFER-LSIV-DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
                     Y  + K    LS+V + G        A+L I EGC+  CTFC++P  RG 
Sbjct: 116 ----------YVPKPKHNPFLSLVPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGD 165

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYS 253
            +SR + +V+ EA++L+D GV EI ++ Q+ +A+      R    +GE  K +   L   
Sbjct: 166 LVSRPIGEVLSEAKRLVDAGVKEILVISQDTSAYGVDVKHRTGFHNGEPVKTSMVSLCEQ 225

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
           LS++    RL Y   +P       + A G +   +PYL +P+Q  S RILK M R  +  
Sbjct: 226 LSKLGIWTRLHYVYPYPHVDDVIPLMAEGKI---LPYLDIPLQHASPRILKLMKRPGSVD 282

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
                I + R + P++ + S FIVGFPGET++DF+  +D + +    +   FKYSP  G 
Sbjct: 283 RQLARIKQWREICPELTLRSTFIVGFPGETEEDFQMLLDFLKEARLDRVGCFKYSPVEGA 342

Query: 374 PGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKL 428
             + + +QV E VK E   R + LQ+++  +++      VG+ I V+I++  +E   G+ 
Sbjct: 343 DANALPDQVPEEVKEERWNRFMQLQQQISAERLQEK---VGREILVIIDEVDEEGAIGRS 399

Query: 429 VGRSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468
           +  +P +   V  +   NI  GDI++V++       L+G  V
Sbjct: 400 MADAPEIDGAVYLNGETNIKPGDILRVKVEHADEYDLWGSRV 441


>gi|227872811|ref|ZP_03991125.1| 2-methylthioadenine synthase [Oribacterium sinus F0268]
 gi|227841338|gb|EEJ51654.1| 2-methylthioadenine synthase [Oribacterium sinus F0268]
          Length = 478

 Score =  189 bits (479), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 117/402 (29%), Positives = 214/402 (53%), Gaps = 40/402 (9%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           RF + + GC++N Y++  M +    +G   V+  ++AD+ ++NTC +   A  K      
Sbjct: 9   RFAMHNLGCKVNSYETEAMTEAILQEGARLVDFTEEADIYLINTCSVTNIADRKS----- 63

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
             R + +   +   + +V+  GC  + + EE L+    +++++G     R+ EL++  R 
Sbjct: 64  --RQMIHQAKQRNPEAIVIATGCYVEGKQEE-LKEDKGIDILIGNTGKGRVVELIKAYR- 119

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNR------KRGVTAFLTIQEGCDKFCTFCVVPYTR 199
            + +++ D S  + F  +   +G Y        K    AF+ +Q+GC++FC +C++PY R
Sbjct: 120 -EAMLENDASPMEPFSPVR-EEGEYENLFLSKPKDKSRAFVKVQDGCNQFCAYCIIPYVR 177

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS----------D 249
           G   SR     ++E R L   G  E+ L G +++++   GLD E  ++            
Sbjct: 178 GRIRSRKEEDCLEEIRHLAKEGFQEVVLTGIHLSSY---GLDFENLSYEYASRKAETGEA 234

Query: 250 LLYSLSE---IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306
           LL+ +SE   I G+ R+R  +  PR +++  +    +++ + P+ HL +QSG+++ LK M
Sbjct: 235 LLHLISEVGKIPGIQRIRLGSLEPRIITERFLAGLKEVEAICPHFHLSLQSGAEKTLKEM 294

Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
           NR +T  ++++ ++ IR V P  AI++D IVGFPGE ++DF+ ++  + +I +     FK
Sbjct: 295 NRHYTKEDFKKAVEDIRRVYPMAAITTDVIVGFPGEREEDFQESLAYLKEISFYDLHVFK 354

Query: 367 YSPRLGTPGSNMLEQVDENVKAER---LLCL----QKKLREQ 401
           +S R GT    M EQ+ +N+K  R   LL L     KK RE+
Sbjct: 355 FSRRKGTKADEMKEQIPDNIKTARSKELLALALEDSKKFREK 396


>gi|163785016|ref|ZP_02179751.1| hypothetical protein HG1285_08916 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159879716|gb|EDP73485.1| hypothetical protein HG1285_08916 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 436

 Score =  188 bits (478), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 123/432 (28%), Positives = 224/432 (51%), Gaps = 23/432 (5%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDD-ADLIVLNTCHIREKAAEKVYSFLGRIRN 89
           + GC+MN +++  +E+ F  +GYE + S DD AD+ V+NTC +   A       L + + 
Sbjct: 10  TLGCRMNQFETSALEEKFNEKGYE-IKSFDDVADIYVVNTCTVTNDADRTSRKVLRQAK- 67

Query: 90  LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER---ARFG 146
                 +   + +VV  GC AQ + EE+ +    V++V+G      + E++E     +  
Sbjct: 68  ------RRNPNAVVVATGCYAQVKPEELAKIEE-VDIVIGNSHKTAVYEIVENYLNEKNQ 120

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
            +V   +   +++FE   I    Y    G    L +QEGC+ FC+FC++P+ RG   S  
Sbjct: 121 DKVFIDNIFRQNEFETFQI-STFY---EGARPILKVQEGCNSFCSFCIIPFARGKVRSAK 176

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
           + ++  + + L++NG  E+ L G  ++ +   G D ++    +LL  L +I GL R+R +
Sbjct: 177 IDEIEKQVKILVENGFKEVVLTGTQLSQY---GYDHKEGYLYNLLKRLIKIDGLYRVRLS 233

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
           +    ++ + L+      + + P+ HL +QS SD++LK M R +T  +Y ++++ I   R
Sbjct: 234 SMGINEIDEKLLDLITSEEKIAPHFHLSLQSASDKVLKDMKRNYTLSQYIKVVNEIVKRR 293

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           PD A+ +D I GFP ET ++F  ++ +++++ +A    F YS R GT      ++V    
Sbjct: 294 PDTAVGTDIITGFPTETREEFEKSLKVIEELPFAYIHVFTYSQRDGTSAVKFGDRVHPKE 353

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHN 446
           K ER   L++    +   F    + + +EVLI   G+++GK +G +     V  NS + N
Sbjct: 354 KKERTRILREISERKNYEFRKKHLNKKLEVLI--IGEKEGKKIGLTGNYIHVRFNS-DKN 410

Query: 447 IGDIIKVRITDV 458
           I  +  V I ++
Sbjct: 411 INQLAYVNILNI 422


>gi|32476670|ref|NP_869664.1| 2-methylthioadenine synthetase [Rhodopirellula baltica SH 1]
 gi|81659389|sp|Q7UK39|RIMO_RHOBA RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|32447216|emb|CAD77042.1| conserved hypothetical protein-putative 2-methylthioadenine
           synthetase [Rhodopirellula baltica SH 1]
          Length = 477

 Score =  188 bits (478), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 134/427 (31%), Positives = 223/427 (52%), Gaps = 47/427 (11%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R+ V S GC  N+ D+ +M     + GY  V+S+D AD +V+NTC   + A ++  + + 
Sbjct: 33  RYAVVSLGCPKNLVDTEQMLGRLDADGYRMVDSVDGADFVVVNTCGFIDSARDESMAAID 92

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +  LK    ++G    VVV GC+A+ + +++L+  P ++ +VG               F
Sbjct: 93  EMLALK----RDGKLRNVVVTGCLAERQQDKLLQARPDIDALVG--------------VF 134

Query: 146 GKR----VVDTDYS-VEDK---FERLSIVDGGYNRKRGVT----AFLTIQEGCDKFCTFC 193
           G+     VVD  YS ++++   F+  ++       +  VT    A+L I EGCD+ CTFC
Sbjct: 135 GRNDIVSVVDELYSGLQEQRTIFKPAAVNPLSDAMRSAVTPRHFAYLKISEGCDRLCTFC 194

Query: 194 VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD--GEKCTFSDLL 251
            +P  RG   S+ + Q++DEA++L D+GV E+ ++ Q+   +   G+D  GE    + LL
Sbjct: 195 AIPKMRGKHFSKPIEQIIDEAKRLGDSGVREVVIVAQDTTYY---GMDRYGEP-RLNQLL 250

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
             L +I+ +  +R    +P  + D LI        ++PY+ +P+Q  SD++LK M R+ T
Sbjct: 251 KELDKIESIDWIRLMYFYPMYIDDALIDTLASARRIVPYIDMPLQHASDKMLKRMARKTT 310

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
                 I+ ++RS    + + +  I GFPGET++DF   MD V +  +     F YS   
Sbjct: 311 RSLQTDIVQKLRSRIDSLVMRTTMITGFPGETEEDFVELMDFVQESRFENLGVFTYSIEE 370

Query: 372 GTPGSNMLEQVDENVKAER---LLCLQKKLREQQVSF--NDACVGQIIEVLIEKHGKEKG 426
            TP + +  +VD  V A R   L+ LQ     QQ++F  ND+ VG   EVLI+    E+ 
Sbjct: 371 DTPAARLPNRVDPEVAARRRDDLMELQ-----QQIAFDWNDSRVGGTEEVLIDAEMPEQD 425

Query: 427 KL-VGRS 432
            + +GR+
Sbjct: 426 NVFIGRT 432


>gi|251790001|ref|YP_003004722.1| ribosomal protein S12 methylthiotransferase [Dickeya zeae Ech1591]
 gi|247538622|gb|ACT07243.1| MiaB-like tRNA modifying enzyme YliG [Dickeya zeae Ech1591]
          Length = 467

 Score =  188 bits (478), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 138/456 (30%), Positives = 226/456 (49%), Gaps = 46/456 (10%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ DS R+     ++GY+ V S +DADL+++NTC   + A ++    +G   N 
Sbjct: 40  SLGCPKNLVDSERILTELRTEGYQVVPSYNDADLVIVNTCGFIDSAVQESLEAIGEALN- 98

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
                 E G   V+V GC+   E + I    P V  + GP +Y ++ + +          
Sbjct: 99  ------ENGK--VIVTGCLGAKENQ-IREVHPKVLEITGPHSYEQVLKHVHHY------- 142

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
                  D F  L    G     R   A+L I EGCD  CTFC++P  RG   SR +  V
Sbjct: 143 -VPKPEHDPFTSLIPAQGVKLTPRHY-AYLKISEGCDHRCTFCIIPSMRGDLDSRPIGSV 200

Query: 211 VDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYSLSEIKG 259
           +DEA++L + GV E+ ++ Q+ +A           W G+ +   K +   L   L+ +  
Sbjct: 201 LDEAKRLAEAGVKELLVISQDTSAYGADVKHRTGFWNGQPV---KTSMVSLCEQLATLGM 257

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
            VRL Y   +P       + A G +   +PYL +P+Q  S ++LK M R        + I
Sbjct: 258 WVRLHYVYPYPHVDDVIPLMAAGKV---LPYLDIPLQHASPKVLKLMKRPGAVERTLERI 314

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            R R + PD+ + S FIVGFPGET++DF+  +D + +    +   F+YSP  G   +++ 
Sbjct: 315 KRWREICPDLTLRSTFIVGFPGETEEDFQMLLDFLQEAQLDRVGCFRYSPVEGAAANDLP 374

Query: 380 EQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPW 434
           + V E+VK +   R + +Q+++  Q++    A VG+ ++VLI++   E   G+ +  +P 
Sbjct: 375 DHVPEDVKEDRYHRFMQVQQQISSQRLQ---AKVGRELKVLIDEVDDEGAIGRSMADAPE 431

Query: 435 LQ-SVVLN-SKNHNIGDIIKVRITDVKISTLYGELV 468
           +  +V LN  K   +GD++ V+I       L+G LV
Sbjct: 432 IDGAVYLNGEKRVKVGDLVTVKIEHADEYDLWGSLV 467


>gi|218548354|ref|YP_002382145.1| ribosomal protein S12 methylthiotransferase [Escherichia fergusonii
           ATCC 35469]
 gi|238065355|sp|B7LMZ9|RIMO_ESCF3 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|218355895|emb|CAQ88510.1| putative AdoMet-dependent methyltransferase, UPF0004 family
           [Escherichia fergusonii ATCC 35469]
 gi|325496777|gb|EGC94636.1| ribosomal protein S12 methylthiotransferase [Escherichia fergusonii
           ECD227]
          Length = 441

 Score =  188 bits (478), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 143/462 (30%), Positives = 232/462 (50%), Gaps = 45/462 (9%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  FV S GC  N+ DS R+     ++GY+ V S DDAD++++NTC   + A ++    
Sbjct: 8   PKIGFV-SLGCPKNLVDSERILTELRTEGYDVVPSYDDADMVIVNTCGFIDSAVQESLEA 66

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G   N       E G   V+V GC+   E ++I    P V  + GP +Y ++ E +   
Sbjct: 67  IGEALN-------ENGK--VIVTGCLGAKE-DQIREVHPKVLEITGPHSYEQVLEHVHH- 115

Query: 144 RFGKRVVDTDYSVEDKFER-LSIV-DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
                     Y  + K    LS+V + G        A+L I EGC+  CTFC++P  RG 
Sbjct: 116 ----------YVPKPKHNPFLSLVPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGD 165

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYS 253
            +SR +  V+ EA++L+D GV EI ++ Q+ +A+      R    +GE  K +   L   
Sbjct: 166 LVSRPIGDVLSEAKRLVDAGVKEILVISQDTSAYGVDVKHRTGFYNGEPVKTSMVSLCEQ 225

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
           LS++    RL Y   +P       + A G +   +PYL +P+Q  S RILK M R  +  
Sbjct: 226 LSKLGIWTRLHYVYPYPHVDDVIPLMAEGKI---LPYLDIPLQHASPRILKLMKRPGSVD 282

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
                I + R + P++ + S FIVGFPGET++DF+  +D + +    +   FKYSP  G 
Sbjct: 283 RQLARIKQWREICPELTLRSTFIVGFPGETEEDFQMLLDFLKEARLDRVGCFKYSPVEGA 342

Query: 374 PGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKL 428
             + + +QV E VK E   R + LQ+++  +++      VG+ I V+I++   E   G+ 
Sbjct: 343 DANALPDQVPEEVKEERWNRFMQLQQQISAERLQEK---VGKEILVIIDEVDDEGAIGRS 399

Query: 429 VGRSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468
           +  +P +   V  +   N+  GDI++V++       L+G  V
Sbjct: 400 MADAPEIDGAVYLNGESNVKPGDIVRVKVEHADEYDLWGSRV 441


>gi|291286754|ref|YP_003503570.1| MiaB-like tRNA modifying enzyme [Denitrovibrio acetiphilus DSM
           12809]
 gi|290883914|gb|ADD67614.1| MiaB-like tRNA modifying enzyme [Denitrovibrio acetiphilus DSM
           12809]
          Length = 439

 Score =  188 bits (477), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 124/400 (31%), Positives = 214/400 (53%), Gaps = 28/400 (7%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R F+ ++GC++N  +S ++ + F       V++ ++ADL++ NTC + E+A  K +S + 
Sbjct: 2   RTFIYTFGCKVNQVESEKIVNEFKDYNLTSVDTANEADLLIFNTCAVTERAENKFHSMVR 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           + R           D+++ V GC A+ + +++  ++   ++VV   T     ++LE    
Sbjct: 62  KARGA-------NPDVIIAVTGCAAEKDKDKL--KALGADIVV---TNSGKMDILEHIVK 109

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
               +D+ +  +   E  +I      R     AF+ IQ+GCD  C +C++P  RG+ +SR
Sbjct: 110 KTDHLDSIFESKGFLEADNISMATRTR-----AFVKIQDGCDSNCAYCIIPSLRGLPVSR 164

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           +   V+ E + L+  G  EI  +G +V  + G+ L  E+     L+  +  I+G  R+R 
Sbjct: 165 ASEAVIAEVKTLVKAGYKEIVPVGIHVGKY-GQDLK-EEIDLPHLIEKIIAIEGDFRVRL 222

Query: 266 TTSHPRDMSDCLIKAHGD-LDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           T+    +++D +I+   +  + +  + H+P+QSGS   L  MNR++TA EY   ++R++ 
Sbjct: 223 TSIELNELTDRMIQMLAENTEKICRHYHIPLQSGSSHTLSMMNRKYTAEEYITKLNRLKE 282

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           + P   + +D IVGFPGETDD F  T+D + K G      F YS R GT  S M ++V  
Sbjct: 283 LVPGCLLGADVIVGFPGETDDHFAETLDTLKKSGLEHLHVFSYSDRSGTKASEMSDKVSG 342

Query: 385 NVKAERLLCLQKKLR--EQQVSFNDA--CVGQIIEVLIEK 420
            VK+ER     KKLR   + V F+ A  CV +I +VL +K
Sbjct: 343 KVKSER----AKKLRAFAENVKFHAAEQCVDKIYKVLTQK 378


>gi|261345828|ref|ZP_05973472.1| RNA modification enzyme, MiaB-family [Providencia rustigianii DSM
           4541]
 gi|282566317|gb|EFB71852.1| RNA modification enzyme, MiaB-family [Providencia rustigianii DSM
           4541]
          Length = 446

 Score =  188 bits (477), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 143/468 (30%), Positives = 232/468 (49%), Gaps = 55/468 (11%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           VP+  FV S GC  N+ DS R+     + GY+ V S DDADL+++NTC   + A ++   
Sbjct: 8   VPKIGFV-SLGCPKNLVDSERILTELRTDGYQVVPSYDDADLVIVNTCGFIDSAVQESLE 66

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +G   N       E G   V+V GC+   E + I    P V  + GP +Y         
Sbjct: 67  AIGEALN-------ENGK--VIVTGCLGAKENQ-IREVHPKVLEITGPHSY--------- 107

Query: 143 ARFGKRVVDTDYSVEDKFER---LSIV-DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
               ++V++  +    K E    LS+V + G        A+L I EGC+  CTFC++P  
Sbjct: 108 ----EQVLNHVHHYVPKPEHDPFLSLVPEQGVKLTPKHYAYLKISEGCNHRCTFCIIPSM 163

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTF 247
           RG   SR +  V++EA++L+++GV E+ ++ Q+ +A           W GK +   K + 
Sbjct: 164 RGDLDSRPIGDVLNEAKRLVESGVKELLVISQDTSAYGVDVKHRTGFWEGKPV---KTSM 220

Query: 248 SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307
             L   L+ +   VRL Y   +P       + A G +   +PYL +P+Q  S +ILK M 
Sbjct: 221 VGLCEQLASMGVWVRLHYVYPYPHVDEVIPLMAEGKV---LPYLDIPLQHASPKILKLMK 277

Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           R        + I R R + P++ + S FIVGFPGET++DF+  +D + +    +   FKY
Sbjct: 278 RPGAVERTLERIKRWREICPELTLRSTFIVGFPGETEEDFQMLLDFLQEARLDRVGCFKY 337

Query: 368 SPRLGTPGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE 424
           SP  G   + + +QV E +K E   R + LQ+++  Q++      VG+ + V+I++   E
Sbjct: 338 SPVEGAKANELADQVSEEIKEERYHRFMQLQQEISTQRLQEK---VGRKLWVIIDEVDDE 394

Query: 425 K--GKLVGRSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468
              G+ +  +P +  +V  +   ++  GDI+ V I       L+G LV
Sbjct: 395 GAVGRSMADAPEIDGMVYLNGEFDVKAGDIVNVLIEHADEYDLWGSLV 442


>gi|15800587|ref|NP_286601.1| hypothetical protein Z1061 [Escherichia coli O157:H7 EDL933]
 gi|15830169|ref|NP_308942.1| ribosomal protein S12 methylthiotransferase [Escherichia coli
           O157:H7 str. Sakai]
 gi|16128803|ref|NP_415356.1| ribosomal protein S12 methylthiotransferase; radical SAM
           superfamily [Escherichia coli str. K-12 substr. MG1655]
 gi|82543282|ref|YP_407229.1| ribosomal protein S12 methylthiotransferase [Shigella boydii Sb227]
 gi|89107686|ref|AP_001466.1| predicted SAM-dependent methyltransferase [Escherichia coli str.
           K-12 substr. W3110]
 gi|157156507|ref|YP_001462031.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli E24377A]
 gi|157160316|ref|YP_001457634.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli HS]
 gi|168750019|ref|ZP_02775041.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli O157:H7 str.
           EC4113]
 gi|168756629|ref|ZP_02781636.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli O157:H7 str.
           EC4401]
 gi|168763315|ref|ZP_02788322.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli O157:H7 str.
           EC4501]
 gi|168767345|ref|ZP_02792352.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli O157:H7 str.
           EC4486]
 gi|168776376|ref|ZP_02801383.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli O157:H7 str.
           EC4196]
 gi|168779387|ref|ZP_02804394.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli O157:H7 str.
           EC4076]
 gi|168787056|ref|ZP_02812063.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli O157:H7 str.
           EC869]
 gi|168799883|ref|ZP_02824890.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli O157:H7 str.
           EC508]
 gi|170020808|ref|YP_001725762.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli ATCC 8739]
 gi|170080494|ref|YP_001729814.1| SAM-dependent methyltransferase [Escherichia coli str. K-12 substr.
           DH10B]
 gi|170679937|ref|YP_001742942.1| ribosomal protein S12 methylthiotransferase [Escherichia coli
           SMS-3-5]
 gi|188491719|ref|ZP_02998989.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli 53638]
 gi|193064469|ref|ZP_03045550.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli E22]
 gi|193069349|ref|ZP_03050304.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli E110019]
 gi|194428238|ref|ZP_03060781.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli B171]
 gi|194438397|ref|ZP_03070487.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli 101-1]
 gi|195936880|ref|ZP_03082262.1| SAM-dependent methyltransferase [Escherichia coli O157:H7 str.
           EC4024]
 gi|208809462|ref|ZP_03251799.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli O157:H7 str.
           EC4206]
 gi|208815511|ref|ZP_03256690.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli O157:H7 str.
           EC4045]
 gi|208822008|ref|ZP_03262327.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli O157:H7 str.
           EC4042]
 gi|209397285|ref|YP_002269504.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli O157:H7 str.
           EC4115]
 gi|209918084|ref|YP_002292168.1| ribosomal protein S12 methylthiotransferase [Escherichia coli SE11]
 gi|215485921|ref|YP_002328352.1| predicted SAM-dependent methyltransferase [Escherichia coli O127:H6
           str. E2348/69]
 gi|217324506|ref|ZP_03440590.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli O157:H7 str.
           TW14588]
 gi|218553421|ref|YP_002386334.1| ribosomal protein S12 methylthiotransferase [Escherichia coli IAI1]
 gi|218694309|ref|YP_002401976.1| putative AdoMet-dependent methyltransferase, UPF0004 family
           [Escherichia coli 55989]
 gi|218699210|ref|YP_002406839.1| ribosomal protein S12 methylthiotransferase [Escherichia coli
           IAI39]
 gi|218704259|ref|YP_002411778.1| ribosomal protein S12 methylthiotransferase [Escherichia coli
           UMN026]
 gi|238900094|ref|YP_002925890.1| putative SAM-dependent methyltransferase [Escherichia coli BW2952]
 gi|253774163|ref|YP_003036994.1| ribosomal protein S12 methylthiotransferase [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254792031|ref|YP_003076868.1| ribosomal protein S12 methylthiotransferase [Escherichia coli
           O157:H7 str. TW14359]
 gi|256021094|ref|ZP_05434959.1| predicted SAM-dependent methyltransferase [Shigella sp. D9]
 gi|256023569|ref|ZP_05437434.1| predicted SAM-dependent methyltransferase [Escherichia sp. 4_1_40B]
 gi|260843086|ref|YP_003220864.1| putative SAM-dependent methyltransferase [Escherichia coli O103:H2
           str. 12009]
 gi|260854127|ref|YP_003228018.1| putative SAM-dependent methyltransferase [Escherichia coli O26:H11
           str. 11368]
 gi|260867009|ref|YP_003233411.1| putative SAM-dependent methyltransferase [Escherichia coli O111:H-
           str. 11128]
 gi|261225485|ref|ZP_05939766.1| predicted SAM-dependent methyltransferase [Escherichia coli O157:H7
           str. FRIK2000]
 gi|261258546|ref|ZP_05951079.1| putative SAM-dependent methyltransferase [Escherichia coli O157:H7
           str. FRIK966]
 gi|293404140|ref|ZP_06648134.1| ribosomal protein S12 methylthiotransferase rimO [Escherichia coli
           FVEC1412]
 gi|293409210|ref|ZP_06652786.1| MiaB tRNA modifying enzyme YliG [Escherichia coli B354]
 gi|293414112|ref|ZP_06656761.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli B185]
 gi|293433133|ref|ZP_06661561.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli B088]
 gi|297519256|ref|ZP_06937642.1| ribosomal protein S12 methylthiotransferase [Escherichia coli OP50]
 gi|298379921|ref|ZP_06989526.1| ribosomal protein S12 methylthiotransferase rimO [Escherichia coli
           FVEC1302]
 gi|300817104|ref|ZP_07097323.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli MS 107-1]
 gi|300823976|ref|ZP_07104098.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli MS 119-7]
 gi|300895750|ref|ZP_07114343.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Escherichia coli
           MS 198-1]
 gi|300907167|ref|ZP_07124830.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli MS 84-1]
 gi|300916314|ref|ZP_07133061.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Escherichia coli
           MS 115-1]
 gi|300924443|ref|ZP_07140413.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Escherichia coli
           MS 182-1]
 gi|300929357|ref|ZP_07144830.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Escherichia coli
           MS 187-1]
 gi|300939879|ref|ZP_07154514.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Escherichia coli
           MS 21-1]
 gi|300947075|ref|ZP_07161296.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Escherichia coli
           MS 116-1]
 gi|300957038|ref|ZP_07169284.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Escherichia coli
           MS 175-1]
 gi|301020653|ref|ZP_07184726.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Escherichia coli
           MS 69-1]
 gi|301027025|ref|ZP_07190406.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Escherichia coli
           MS 196-1]
 gi|301303594|ref|ZP_07209716.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli MS 124-1]
 gi|301325843|ref|ZP_07219276.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Escherichia coli
           MS 78-1]
 gi|301646272|ref|ZP_07246163.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Escherichia coli
           MS 146-1]
 gi|306812763|ref|ZP_07446956.1| putative SAM-dependent methyltransferase [Escherichia coli NC101]
 gi|307137463|ref|ZP_07496819.1| ribosomal protein S12 methylthiotransferase [Escherichia coli H736]
 gi|307314528|ref|ZP_07594131.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli W]
 gi|309795418|ref|ZP_07689836.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli MS 145-7]
 gi|312969142|ref|ZP_07783349.1| RNA modification enzyme, MiaB family protein [Escherichia coli
           2362-75]
 gi|312970914|ref|ZP_07785093.1| RNA modification enzyme, MiaB family protein [Escherichia coli
           1827-70]
 gi|331641355|ref|ZP_08342490.1| putative Fe-S oxidoreductase family 1 [Escherichia coli H736]
 gi|331646054|ref|ZP_08347157.1| putative Fe-S oxidoreductase family 1 [Escherichia coli M605]
 gi|331651848|ref|ZP_08352867.1| putative Fe-S oxidoreductase family 1 [Escherichia coli M718]
 gi|331662196|ref|ZP_08363119.1| putative Fe-S oxidoreductase family 1 [Escherichia coli TA143]
 gi|331667207|ref|ZP_08368072.1| putative Fe-S oxidoreductase family 1 [Escherichia coli TA271]
 gi|331676574|ref|ZP_08377270.1| putative Fe-S oxidoreductase family 1 [Escherichia coli H591]
 gi|332282318|ref|ZP_08394731.1| conserved hypothetical protein [Shigella sp. D9]
 gi|83288204|sp|P0AEI5|RIMO_ECO57 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|83288205|sp|P0AEI4|RIMO_ECOLI RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|123742019|sp|Q323V7|RIMO_SHIBS RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|238065339|sp|A7ZJQ2|RIMO_ECO24 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|238065341|sp|B7LCB8|RIMO_ECO55 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|238065342|sp|B5YSC6|RIMO_ECO5E RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|238065343|sp|B7NNR8|RIMO_ECO7I RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|238065345|sp|B7M7B0|RIMO_ECO8A RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|238065346|sp|B1X7X6|RIMO_ECODH RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|238065347|sp|A7ZY97|RIMO_ECOHS RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|238065349|sp|B1IXD2|RIMO_ECOLC RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|238065350|sp|B7NAI1|RIMO_ECOLU RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|238065351|sp|B6I8F5|RIMO_ECOSE RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|238065352|sp|B1LMD0|RIMO_ECOSM RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|12513847|gb|AAG55211.1|AE005265_1 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933]
 gi|1787057|gb|AAC73922.1| ribosomal protein S12 methylthiotransferase; radical SAM
           superfamily [Escherichia coli str. K-12 substr. MG1655]
 gi|4062412|dbj|BAA35530.1| predicted SAM-dependent methyltransferase [Escherichia coli str.
           K12 substr. W3110]
 gi|13360374|dbj|BAB34338.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
 gi|81244693|gb|ABB65401.1| conserved hypothetical protein [Shigella boydii Sb227]
 gi|157065996|gb|ABV05251.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli HS]
 gi|157078537|gb|ABV18245.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli E24377A]
 gi|169755736|gb|ACA78435.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli ATCC 8739]
 gi|169888329|gb|ACB02036.1| predicted SAM-dependent methyltransferase [Escherichia coli str.
           K-12 substr. DH10B]
 gi|170517655|gb|ACB15833.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli SMS-3-5]
 gi|187768242|gb|EDU32086.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli O157:H7 str.
           EC4196]
 gi|188015693|gb|EDU53815.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli O157:H7 str.
           EC4113]
 gi|188486918|gb|EDU62021.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli 53638]
 gi|189003096|gb|EDU72082.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli O157:H7 str.
           EC4076]
 gi|189356288|gb|EDU74707.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli O157:H7 str.
           EC4401]
 gi|189363546|gb|EDU81965.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli O157:H7 str.
           EC4486]
 gi|189366506|gb|EDU84922.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli O157:H7 str.
           EC4501]
 gi|189373003|gb|EDU91419.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli O157:H7 str.
           EC869]
 gi|189377794|gb|EDU96210.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli O157:H7 str.
           EC508]
 gi|192928931|gb|EDV82544.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli E22]
 gi|192957302|gb|EDV87750.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli E110019]
 gi|194413798|gb|EDX30077.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli B171]
 gi|194422621|gb|EDX38618.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli 101-1]
 gi|208729263|gb|EDZ78864.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli O157:H7 str.
           EC4206]
 gi|208732159|gb|EDZ80847.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli O157:H7 str.
           EC4045]
 gi|208737493|gb|EDZ85176.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli O157:H7 str.
           EC4042]
 gi|209158685|gb|ACI36118.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli O157:H7 str.
           EC4115]
 gi|209775578|gb|ACI86101.1| hypothetical protein ECs0915 [Escherichia coli]
 gi|209775580|gb|ACI86102.1| hypothetical protein ECs0915 [Escherichia coli]
 gi|209775582|gb|ACI86103.1| hypothetical protein ECs0915 [Escherichia coli]
 gi|209775586|gb|ACI86105.1| hypothetical protein ECs0915 [Escherichia coli]
 gi|209911343|dbj|BAG76417.1| conserved hypothetical protein [Escherichia coli SE11]
 gi|215263993|emb|CAS08334.1| predicted SAM-dependent methyltransferase [Escherichia coli O127:H6
           str. E2348/69]
 gi|217320727|gb|EEC29151.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli O157:H7 str.
           TW14588]
 gi|218351041|emb|CAU96745.1| putative AdoMet-dependent methyltransferase, UPF0004 family
           [Escherichia coli 55989]
 gi|218360189|emb|CAQ97739.1| putative AdoMet-dependent methyltransferase, UPF0004 family
           [Escherichia coli IAI1]
 gi|218369196|emb|CAR16951.1| putative AdoMet-dependent methyltransferase, UPF0004 family
           [Escherichia coli IAI39]
 gi|218431356|emb|CAR12234.1| putative AdoMet-dependent methyltransferase, UPF0004 family
           [Escherichia coli UMN026]
 gi|238863092|gb|ACR65090.1| predicted SAM-dependent methyltransferase [Escherichia coli BW2952]
 gi|242376626|emb|CAQ31336.1| ribosomal protein S12 D88 methylthiotransferase [Escherichia coli
           BL21(DE3)]
 gi|253325207|gb|ACT29809.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253977033|gb|ACT42703.1| predicted SAM-dependent methyltransferase [Escherichia coli
           BL21(DE3)]
 gi|254591431|gb|ACT70792.1| predicted SAM-dependent methyltransferase [Escherichia coli O157:H7
           str. TW14359]
 gi|257752776|dbj|BAI24278.1| predicted SAM-dependent methyltransferase [Escherichia coli O26:H11
           str. 11368]
 gi|257758233|dbj|BAI29730.1| predicted SAM-dependent methyltransferase [Escherichia coli O103:H2
           str. 12009]
 gi|257763365|dbj|BAI34860.1| predicted SAM-dependent methyltransferase [Escherichia coli O111:H-
           str. 11128]
 gi|260450018|gb|ACX40440.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli DH1]
 gi|281177970|dbj|BAI54300.1| conserved hypothetical protein [Escherichia coli SE15]
 gi|284920688|emb|CBG33751.1| radical SAM superfamily protein [Escherichia coli 042]
 gi|291323952|gb|EFE63374.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli B088]
 gi|291428726|gb|EFF01751.1| ribosomal protein S12 methylthiotransferase rimO [Escherichia coli
           FVEC1412]
 gi|291434170|gb|EFF07143.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli B185]
 gi|291469678|gb|EFF12162.1| MiaB tRNA modifying enzyme YliG [Escherichia coli B354]
 gi|298279619|gb|EFI21127.1| ribosomal protein S12 methylthiotransferase rimO [Escherichia coli
           FVEC1302]
 gi|299879453|gb|EFI87664.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Escherichia coli
           MS 196-1]
 gi|300316178|gb|EFJ65962.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Escherichia coli
           MS 175-1]
 gi|300360324|gb|EFJ76194.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Escherichia coli
           MS 198-1]
 gi|300398581|gb|EFJ82119.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Escherichia coli
           MS 69-1]
 gi|300401042|gb|EFJ84580.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli MS 84-1]
 gi|300416403|gb|EFJ99713.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Escherichia coli
           MS 115-1]
 gi|300419328|gb|EFK02639.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Escherichia coli
           MS 182-1]
 gi|300453314|gb|EFK16934.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Escherichia coli
           MS 116-1]
 gi|300455261|gb|EFK18754.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Escherichia coli
           MS 21-1]
 gi|300462703|gb|EFK26196.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Escherichia coli
           MS 187-1]
 gi|300523487|gb|EFK44556.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli MS 119-7]
 gi|300530456|gb|EFK51518.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli MS 107-1]
 gi|300841093|gb|EFK68853.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli MS 124-1]
 gi|300847357|gb|EFK75117.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Escherichia coli
           MS 78-1]
 gi|301075475|gb|EFK90281.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Escherichia coli
           MS 146-1]
 gi|305853526|gb|EFM53965.1| putative SAM-dependent methyltransferase [Escherichia coli NC101]
 gi|306905951|gb|EFN36473.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli W]
 gi|308121068|gb|EFO58330.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli MS 145-7]
 gi|309701113|emb|CBJ00411.1| radical SAM superfamily protein [Escherichia coli ETEC H10407]
 gi|310336675|gb|EFQ01842.1| RNA modification enzyme, MiaB family protein [Escherichia coli
           1827-70]
 gi|312286544|gb|EFR14457.1| RNA modification enzyme, MiaB family protein [Escherichia coli
           2362-75]
 gi|315060073|gb|ADT74400.1| predicted SAM-dependent methyltransferase [Escherichia coli W]
 gi|315135484|dbj|BAJ42643.1| ribosomal protein S12 methylthiotransferase rimO [Escherichia coli
           DH1]
 gi|315257824|gb|EFU37792.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli MS 85-1]
 gi|315619839|gb|EFV00358.1| RNA modification enzyme, MiaB family protein [Escherichia coli
           3431]
 gi|320186091|gb|EFW60835.1| hypothetical protein SGF_01691 [Shigella flexneri CDC 796-83]
 gi|320192686|gb|EFW67327.1| hypothetical protein ECoD_00613 [Escherichia coli O157:H7 str.
           EC1212]
 gi|320196670|gb|EFW71293.1| hypothetical protein EcoM_01211 [Escherichia coli WV_060327]
 gi|320199026|gb|EFW73623.1| hypothetical protein ECoL_03723 [Escherichia coli EC4100B]
 gi|320637701|gb|EFX07493.1| ribosomal protein S12 methylthiotransferase [Escherichia coli
           O157:H7 str. G5101]
 gi|320642825|gb|EFX12026.1| ribosomal protein S12 methylthiotransferase [Escherichia coli
           O157:H- str. 493-89]
 gi|320648282|gb|EFX16937.1| ribosomal protein S12 methylthiotransferase [Escherichia coli
           O157:H- str. H 2687]
 gi|320654119|gb|EFX22187.1| ribosomal protein S12 methylthiotransferase [Escherichia coli
           O55:H7 str. 3256-97 TW 07815]
 gi|320664213|gb|EFX31364.1| ribosomal protein S12 methylthiotransferase [Escherichia coli
           O157:H7 str. LSU-61]
 gi|323155793|gb|EFZ41962.1| RNA modification enzyme, MiaB family protein [Escherichia coli
           EPECa14]
 gi|323159657|gb|EFZ45636.1| RNA modification enzyme, MiaB family protein [Escherichia coli
           E128010]
 gi|323172246|gb|EFZ57884.1| RNA modification enzyme, MiaB family protein [Escherichia coli
           LT-68]
 gi|323175544|gb|EFZ61139.1| RNA modification enzyme, MiaB family protein [Escherichia coli
           1180]
 gi|323185248|gb|EFZ70613.1| RNA modification enzyme, MiaB family protein [Escherichia coli
           1357]
 gi|323379369|gb|ADX51637.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli KO11]
 gi|323938190|gb|EGB34450.1| MiaB tRNA modifying enzyme YliG [Escherichia coli E1520]
 gi|323942707|gb|EGB38872.1| MiaB tRNA modifying enzyme YliG [Escherichia coli E482]
 gi|323947141|gb|EGB43152.1| MiaB tRNA modifying enzyme YliG [Escherichia coli H120]
 gi|323962948|gb|EGB58520.1| MiaB tRNA modifying enzyme YliG [Escherichia coli H489]
 gi|323967270|gb|EGB62693.1| MiaB tRNA modifying enzyme YliG [Escherichia coli M863]
 gi|323969601|gb|EGB64889.1| MiaB tRNA modifying enzyme YliG [Escherichia coli TA007]
 gi|323976780|gb|EGB71868.1| MiaB tRNA modifying enzyme YliG [Escherichia coli TW10509]
 gi|324015967|gb|EGB85186.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Escherichia coli
           MS 117-3]
 gi|324116148|gb|EGC10071.1| MiaB tRNA modifying enzyme YliG [Escherichia coli E1167]
 gi|326338276|gb|EGD62105.1| hypothetical protein ECF_05227 [Escherichia coli O157:H7 str. 1125]
 gi|326346253|gb|EGD69991.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli O157:H7 str.
           1044]
 gi|327253622|gb|EGE65251.1| RNA modification enzyme, MiaB family protein [Escherichia coli
           STEC_7v]
 gi|330910577|gb|EGH39087.1| ribosomal protein S12p Asp88 methylthiotransferase [Escherichia
           coli AA86]
 gi|331038153|gb|EGI10373.1| putative Fe-S oxidoreductase family 1 [Escherichia coli H736]
 gi|331044806|gb|EGI16933.1| putative Fe-S oxidoreductase family 1 [Escherichia coli M605]
 gi|331050126|gb|EGI22184.1| putative Fe-S oxidoreductase family 1 [Escherichia coli M718]
 gi|331060618|gb|EGI32582.1| putative Fe-S oxidoreductase family 1 [Escherichia coli TA143]
 gi|331065563|gb|EGI37456.1| putative Fe-S oxidoreductase family 1 [Escherichia coli TA271]
 gi|331075263|gb|EGI46561.1| putative Fe-S oxidoreductase family 1 [Escherichia coli H591]
 gi|332088907|gb|EGI94019.1| RNA modification enzyme, MiaB family protein [Shigella boydii
           5216-82]
 gi|332097419|gb|EGJ02399.1| RNA modification enzyme, MiaB family protein [Shigella boydii
           3594-74]
 gi|332104670|gb|EGJ08016.1| conserved hypothetical protein [Shigella sp. D9]
 gi|332342168|gb|AEE55502.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli UMNK88]
          Length = 441

 Score =  188 bits (477), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 143/462 (30%), Positives = 234/462 (50%), Gaps = 45/462 (9%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  FV S GC  N+ DS R+     ++GY+ V S DDAD++++NTC   + A ++    
Sbjct: 8   PKIGFV-SLGCPKNLVDSERILTELRTEGYDVVPSYDDADMVIVNTCGFIDSAVQESLEA 66

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G   N       E G   V+V GC+   E ++I    P V  + GP +Y ++ E +   
Sbjct: 67  IGEALN-------ENGK--VIVTGCLGAKE-DQIREVHPKVLEITGPHSYEQVLEHVHH- 115

Query: 144 RFGKRVVDTDYSVEDKFER-LSIV-DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
                     Y  + K    LS+V + G        A+L I EGC+  CTFC++P  RG 
Sbjct: 116 ----------YVPKPKHNPFLSLVPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGD 165

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYS 253
            +SR + +V+ EA++L+D GV EI ++ Q+ +A+      R    +GE  K +   L   
Sbjct: 166 LVSRPIGEVLSEAKRLVDAGVKEILVISQDTSAYGVDVKHRTGFHNGEPVKTSMVSLCEQ 225

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
           LS++    RL Y   +P       + A G +   +PYL +P+Q  S RILK M R  +  
Sbjct: 226 LSKLGIWTRLHYVYPYPHVDDVIPLMAEGKI---LPYLDIPLQHASPRILKLMKRPGSVD 282

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
                I + R + P++ + S FIVGFPGET++DF+  +D + +    +   FKYSP  G 
Sbjct: 283 RQLARIKQWREICPELTLRSTFIVGFPGETEEDFQMLLDFLKEARLDRVGCFKYSPVEGA 342

Query: 374 PGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKL 428
             + + +QV E VK E   R + LQ+++  +++      VG+ I V+I++  +E   G+ 
Sbjct: 343 DANALPDQVPEEVKEERWNRFMQLQQQISAERLQEK---VGREILVIIDEVDEEGAIGRS 399

Query: 429 VGRSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468
           +  +P +   V  +   N+  GDI++V++       L+G  V
Sbjct: 400 MADAPEIDGAVYLNGETNVKPGDILRVKVEHADEYDLWGSRV 441


>gi|26246810|ref|NP_752850.1| ribosomal protein S12 methylthiotransferase [Escherichia coli
           CFT073]
 gi|91209869|ref|YP_539855.1| ribosomal protein S12 methylthiotransferase [Escherichia coli
           UTI89]
 gi|110641037|ref|YP_668767.1| hypothetical protein ECP_0849 [Escherichia coli 536]
 gi|117623015|ref|YP_851928.1| hypothetical protein APECO1_1258 [Escherichia coli APEC O1]
 gi|191173725|ref|ZP_03035248.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli F11]
 gi|218557739|ref|YP_002390652.1| ribosomal protein S12 methylthiotransferase [Escherichia coli S88]
 gi|218688618|ref|YP_002396830.1| ribosomal protein S12 methylthiotransferase [Escherichia coli ED1a]
 gi|227884201|ref|ZP_04002006.1| 2-methylthioadenine synthetase [Escherichia coli 83972]
 gi|237707202|ref|ZP_04537683.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|300991871|ref|ZP_07179696.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Escherichia coli
           MS 200-1]
 gi|300993439|ref|ZP_07180381.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Escherichia coli
           MS 45-1]
 gi|301051237|ref|ZP_07198066.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Escherichia coli
           MS 185-1]
 gi|331656857|ref|ZP_08357819.1| putative Fe-S oxidoreductase family 1 [Escherichia coli TA206]
 gi|331682343|ref|ZP_08382962.1| putative Fe-S oxidoreductase family 1 [Escherichia coli H299]
 gi|81477710|sp|Q8FJK5|RIMO_ECOL6 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|122424474|sp|Q1RE90|RIMO_ECOUT RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|123344201|sp|Q0TJL3|RIMO_ECOL5 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|238065340|sp|B7MGU2|RIMO_ECO45 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|238065344|sp|B7MQT8|RIMO_ECO81 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|238065348|sp|A1A974|RIMO_ECOK1 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|26107209|gb|AAN79393.1|AE016757_297 Hypothetical protein yliG [Escherichia coli CFT073]
 gi|91071443|gb|ABE06324.1| hypothetical protein YliG [Escherichia coli UTI89]
 gi|110342629|gb|ABG68866.1| hypothetical protein YliG [Escherichia coli 536]
 gi|115512139|gb|ABJ00214.1| conserved hypothetical protein [Escherichia coli APEC O1]
 gi|190905975|gb|EDV65591.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli F11]
 gi|218364508|emb|CAR02190.1| putative AdoMet-dependent methyltransferase, UPF0004 family
           [Escherichia coli S88]
 gi|218426182|emb|CAR07004.1| putative AdoMet-dependent methyltransferase, UPF0004 family
           [Escherichia coli ED1a]
 gi|222032564|emb|CAP75303.1| UPF0004 protein yliG [Escherichia coli LF82]
 gi|226898412|gb|EEH84671.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|227838953|gb|EEJ49419.1| 2-methylthioadenine synthetase [Escherichia coli 83972]
 gi|294494144|gb|ADE92900.1| ribosomal protein S12 methylthiotransferase RimO [Escherichia coli
           IHE3034]
 gi|300297144|gb|EFJ53529.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Escherichia coli
           MS 185-1]
 gi|300305481|gb|EFJ60001.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Escherichia coli
           MS 200-1]
 gi|300406553|gb|EFJ90091.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Escherichia coli
           MS 45-1]
 gi|307552678|gb|ADN45453.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli ABU 83972]
 gi|307627756|gb|ADN72060.1| ribosomal protein S12 methylthiotransferase [Escherichia coli
           UM146]
 gi|312945352|gb|ADR26179.1| putative AdoMet-dependent methyltransferase, UPF0004 family protein
           [Escherichia coli O83:H1 str. NRG 857C]
 gi|315287333|gb|EFU46744.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli MS 110-3]
 gi|315292510|gb|EFU51862.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli MS 153-1]
 gi|323953504|gb|EGB49370.1| MiaB tRNA modifying enzyme YliG [Escherichia coli H252]
 gi|323958124|gb|EGB53833.1| MiaB tRNA modifying enzyme YliG [Escherichia coli H263]
 gi|324009731|gb|EGB78950.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Escherichia coli
           MS 57-2]
 gi|324013058|gb|EGB82277.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Escherichia coli
           MS 60-1]
 gi|331055105|gb|EGI27114.1| putative Fe-S oxidoreductase family 1 [Escherichia coli TA206]
 gi|331079974|gb|EGI51153.1| putative Fe-S oxidoreductase family 1 [Escherichia coli H299]
          Length = 441

 Score =  188 bits (477), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 143/462 (30%), Positives = 234/462 (50%), Gaps = 45/462 (9%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  FV S GC  N+ DS R+     ++GY+ V S DDAD++++NTC   + A ++    
Sbjct: 8   PKIGFV-SLGCPKNLVDSERILTELRTEGYDVVPSYDDADMVIVNTCGFIDSAVQESLEA 66

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G   N       E G   V+V GC+   E ++I    P V  + GP +Y ++ E +   
Sbjct: 67  IGEALN-------ENGK--VIVTGCLGAKE-DQIREVHPKVLEITGPHSYEQVLEHVHH- 115

Query: 144 RFGKRVVDTDYSVEDKFER-LSIV-DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
                     Y  + K    LS+V + G        A+L I EGC+  CTFC++P  RG 
Sbjct: 116 ----------YVPKPKHNPFLSLVPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGD 165

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYS 253
            +SR + +V+ EA++L+D GV EI ++ Q+ +A+      R    +GE  K +   L   
Sbjct: 166 LVSRPIGEVLSEAKRLVDAGVKEILVISQDTSAYGVDVKHRTGFHNGEPVKTSMVSLCEQ 225

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
           LS++    RL Y   +P       + A G +   +PYL +P+Q  S RILK M R  +  
Sbjct: 226 LSKLGIWTRLHYVYPYPHVDDVIPLMAEGKI---LPYLDIPLQHASPRILKLMKRPGSVD 282

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
                I + R + P++ + S FIVGFPGET++DF+  +D + +    +   FKYSP  G 
Sbjct: 283 RQLARIKQWRKICPELTLRSTFIVGFPGETEEDFQMLLDFLKEARLDRVGCFKYSPVEGA 342

Query: 374 PGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKL 428
             + + +QV E VK E   R + LQ+++  +++      VG+ I V+I++  +E   G+ 
Sbjct: 343 DANALPDQVPEEVKEERWNRFMQLQQQISAERLQEK---VGREILVIIDEVDEEGAIGRS 399

Query: 429 VGRSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468
           +  +P +   V  +   N+  GDI++V++       L+G  V
Sbjct: 400 MADAPEIDGAVYLNGETNVKPGDILRVKVEHADEYDLWGSRV 441


>gi|113461587|ref|YP_719656.1| ribosomal protein S12 methylthiotransferase [Haemophilus somnus
           129PT]
 gi|123327372|sp|Q0I4D9|RIMO_HAES1 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|112823630|gb|ABI25719.1| SSU ribosomal protein S12P methylthiotransferase [Haemophilus
           somnus 129PT]
          Length = 443

 Score =  188 bits (477), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 137/461 (29%), Positives = 224/461 (48%), Gaps = 52/461 (11%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ DS R+     S GY  ++S + ADL+++NTC   + A ++    +G    L
Sbjct: 11  SLGCPKNLVDSERILTELRSDGYNIISSYEGADLVIVNTCGFIDSAVQESLESIGE--AL 68

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
           +N+         V+V GC+   E + I    P V  + GP +Y  +          K V 
Sbjct: 69  ENNG-------KVIVTGCLGAKENQ-IREIHPQVLEITGPHSYEAV-----MKHVHKYVP 115

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
             +YS         +   G        A+L I EGCD  CTFC++P  RG   SRS+  +
Sbjct: 116 KPEYSPYTSL----VPKHGIKLTPKHYAYLKISEGCDHRCTFCIIPSMRGDLDSRSIVHI 171

Query: 211 VDEARKLIDNGVCEITLLGQNVNA---------------WRGKGLDGEKCTFSDLLYSLS 255
           +DEA++L+D GV EI ++ Q+ +A               W G  +  +  T  + L SL 
Sbjct: 172 LDEAKRLVDAGVKEILVVSQDTSAYALDKKKENASKTVFWNGMPIKNDLITLCEKLGSLG 231

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
                VRL Y   +P   +   + A G +   +PYL +P+Q  S +ILK M R  +    
Sbjct: 232 ---AWVRLHYVYPYPHVDNLIPLMAEGKI---LPYLDIPLQHASPKILKMMKRPGSIERT 285

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
            + I + R + PD+ + S FIVGFPGET++DF+  +D + +    +   FK+SP  G   
Sbjct: 286 LERIKKWREICPDLTLRSTFIVGFPGETEEDFQLLLDFLQEAQLDRVGCFKFSPVEGAVA 345

Query: 376 SNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVG 430
           ++M +Q+ E +K E   R + LQ+K+  +++      +G+ + V+I++  +E   G+ + 
Sbjct: 346 TDMEDQIPEEIKEERFHRFMQLQQKISAERLRQK---IGRTLPVIIDEIDEEGIIGRTMA 402

Query: 431 RSPWLQSVV----LNSKNHNIGDIIKVRITDVKISTLYGEL 467
            +P +  VV     +     +G II V IT+     L+GE+
Sbjct: 403 DAPEIDGVVYVDNFSKVEVKLGQIINVTITNADEYDLWGEI 443


>gi|312622756|ref|YP_004024369.1| miab-like tRNA modifying enzyme ylig [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312203223|gb|ADQ46550.1| MiaB-like tRNA modifying enzyme YliG [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 440

 Score =  188 bits (477), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 136/453 (30%), Positives = 230/453 (50%), Gaps = 35/453 (7%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ DS  M       G+E  ++ +DAD+IV+NTC     A ++    +  +   
Sbjct: 8   SLGCNKNLVDSEIMMGACVKAGFEITSNAEDADVIVVNTCGFINDAKQESIDTILDMAEY 67

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
           KN + K      ++V GC+ Q   +EIL + P ++ ++G +   +LPE+++    GK+ +
Sbjct: 68  KNKKCK-----FLIVTGCLTQRYKDEILEQMPEIDAILGVKEMLKLPEVIKDLYEGKQKI 122

Query: 151 DTDYSVEDKFERLS-----IVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
              +     F  LS     I    Y       A++ I EGC+  C++C +P  RG   SR
Sbjct: 123 KV-FDDTSSFVYLSSMPRMIATPSY------YAYIKIAEGCNNRCSYCSIPLIRGKYTSR 175

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            +  +V EA++L + G  EI L  Q+   + G  L G+K   + LL  L +I+ +  +R+
Sbjct: 176 PIEDIVKEAKELAEKGYKEIVLTAQDTTKY-GLDLYGKKMLHA-LLEELEKIEKIKWIRF 233

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
             S+P D+ + LI+       ++ Y  +P+Q  +DRILK MNR+ T    +++I++IR  
Sbjct: 234 LYSYPEDVDESLIEVVKSSSKIVNYFDIPIQHINDRILKLMNRKTTKEGIKRLIEKIRRS 293

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
             ++ I +  +VGFP ETD++F      +    + +  +F YS   GT  S  L Q+D+ 
Sbjct: 294 FDEVIIRTTVLVGFPTETDEEFEELCSFIKWAEFDRLGAFMYSQEEGTLASQ-LPQIDDE 352

Query: 386 VKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL-VGRSPWL------ 435
           VK  R   +L +Q+K+ ++Q   N   VG+  EV+IE   K+K    +GRS +       
Sbjct: 353 VKQRRYENILNIQRKISKRQ---NKKRVGREYEVVIE--AKDKNNFYIGRSQFEAPEVDG 407

Query: 436 QSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           + +V + K    G  + V+I D     L GE++
Sbjct: 408 KVLVFSQKKLTAGQFVNVKILDAFEYDLVGEII 440


>gi|291528906|emb|CBK94492.1| SSU ribosomal protein S12P methylthiotransferase [Eubacterium
           rectale M104/1]
          Length = 441

 Score =  188 bits (477), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 136/455 (29%), Positives = 228/455 (50%), Gaps = 28/455 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC  N+ DS  M  M  + G E  +    AD+I++N+C     A E+  + + 
Sbjct: 2   KLLFISLGCDKNLVDSEYMIGMLANDGIEMTDDETQADIIIVNSCCFIGDAKEESINTI- 60

Query: 86  RIRNLKNSRIKEGGDL-LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTY----YRLPELL 140
               L+ ++ KE G    ++V GC+AQ   +EI +  P V+ ++G  +Y      + E L
Sbjct: 61  ----LEMAQYKETGKCKSLIVTGCLAQRYKDEIFKEIPEVDAILGTNSYDTIVEAVHETL 116

Query: 141 ERARFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           E+ R+     ++   S++ K     IV  G     G  A+L I EGC+K CT+CV+P  R
Sbjct: 117 EKHRYSNLHTLEGLPSIKTK----RIVTTG-----GHFAYLKIAEGCNKNCTYCVIPSVR 167

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G   S  +  ++++A+ L++ G  E+ L+ Q    + G  L GEK +   LL  L++I G
Sbjct: 168 GRYRSVPMEDLIEQAKNLVEQGAKELILVAQETTLY-GVDLYGEK-SLHKLLDELNKISG 225

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           L  +R    +P ++ D LI++    + +  YL +P+Q  +D IL+ M R+ T  E  + I
Sbjct: 226 LFWIRIMYCYPEEIYDELIESMIKDEKVCHYLDMPIQHCNDDILRRMGRKTTKAELMERI 285

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
             +R   PDI + +  I GFPGET D+    M  V+ + + +  +F YSP  GT  + M 
Sbjct: 286 RMLRERIPDITLRTTLICGFPGETQDNHEELMQFVNDMEFDRLGAFTYSPEEGTKAAAMP 345

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWL 435
           +Q+DE++K +    + +   E     N+   G+ + V IE    ++   +GR+    P +
Sbjct: 346 DQIDEDIKTDWQADVMELEEEVIFDKNETLKGKELYVFIEGKVADENAYIGRTYRDAPNV 405

Query: 436 QSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468
              +  + +  +  GDI KV +T      L GELV
Sbjct: 406 DGYIFINTDETLMTGDICKVMVTGAYEYDLIGELV 440


>gi|29840285|ref|NP_829391.1| MiaB-like tRNA modifying enzyme YliG [Chlamydophila caviae GPIC]
 gi|81584463|sp|Q823A0|RIMO_CHLCV RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|29834633|gb|AAP05269.1| MiaB-like tRNA modifying enzyme YliG [Chlamydophila caviae GPIC]
          Length = 460

 Score =  188 bits (477), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 119/409 (29%), Positives = 204/409 (49%), Gaps = 20/409 (4%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ DS  M  +    GYE   ++++AD ++LNTC   + A ++   +L RI   
Sbjct: 22  SLGCSRNLVDSEVMLGILLKAGYEATETLEEADYLILNTCAFLKAARDESKDYLQRIIKA 81

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
           K    K      +++ GC+     EE+    P ++ V+G      +   +E    G+++ 
Sbjct: 82  KKESAK------IILTGCMVSKHKEELKPWLPYIHYVLGSGDVEHILSAIESKEAGEKLT 135

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
              Y    +  R       Y       A+L I EGC K C FC++P  +G   S+SL Q+
Sbjct: 136 SKSYLEMGEIPRKLSTPKHY-------AYLKIAEGCRKRCAFCIIPTIKGGLRSKSLDQI 188

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE-KCTFSDLLYSLSEIKGLVRLRYTTSH 269
           + E R L+  GV EI L+ Q++  + GK L  + K     +L  + +  G   +R    +
Sbjct: 189 IKEFRLLLKMGVKEIILIAQDLGDY-GKDLSADRKSCLDSVLKEMLKEPGDYWIRMLYLY 247

Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329
           P ++ D +I        L+PY+ +P+Q  ++R+LKSM R  +  +   ++ ++R+  P I
Sbjct: 248 PDEVDDTIIDLMESDPRLLPYVDIPLQHINNRVLKSMLRTTSKEQILDLLTKLRTRIPHI 307

Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAE 389
            I S FIVGFPGETD++F+  +D V +        F YS   G+  +NM +Q+ ++VK++
Sbjct: 308 YIRSSFIVGFPGETDEEFQDLVDFVSEGWIDNLGIFSYSQEEGSVAANMADQISQSVKSK 367

Query: 390 RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-----GKLVGRSP 433
           RL  L +  ++     N   VGQI+E +I+ +  +       +  G++P
Sbjct: 368 RLKILSQTQKKNVEKHNKQLVGQIVEAVIDGYHPDSELLLTARFYGQAP 416


>gi|170718739|ref|YP_001783927.1| ribosomal protein S12 methylthiotransferase [Haemophilus somnus
           2336]
 gi|238066256|sp|B0US28|RIMO_HAES2 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|168826868|gb|ACA32239.1| MiaB-like tRNA modifying enzyme YliG [Haemophilus somnus 2336]
          Length = 443

 Score =  188 bits (477), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 137/461 (29%), Positives = 224/461 (48%), Gaps = 52/461 (11%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ DS R+     S GY  ++S + ADL+++NTC   + A ++    +G    L
Sbjct: 11  SLGCPKNLVDSERILTELRSDGYNIISSYEGADLVIVNTCGFIDSAVQESLESIGE--AL 68

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
           +N+         V+V GC+   E + I    P V  + GP +Y  +          K V 
Sbjct: 69  ENNG-------KVIVTGCLGAKENQ-IREIHPQVLEITGPHSYEAV-----MKHVHKYVP 115

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
             +YS         +   G        A+L I EGCD  CTFC++P  RG   SRS+  +
Sbjct: 116 KPEYSPYTSL----VPKQGIKLTPKHYAYLKISEGCDHRCTFCIIPSMRGDLDSRSIVHI 171

Query: 211 VDEARKLIDNGVCEITLLGQNVNA---------------WRGKGLDGEKCTFSDLLYSLS 255
           +DEA++L+D GV EI ++ Q+ +A               W G  +  +  T  + L SL 
Sbjct: 172 LDEAKRLVDAGVKEILVVSQDTSAYALDKKKENASKTVFWNGMPIKNDLITLCEKLGSLG 231

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
                VRL Y   +P   +   + A G +   +PYL +P+Q  S +ILK M R  +    
Sbjct: 232 ---AWVRLHYVYPYPHVDNLIPLMAEGKI---LPYLDIPLQHASPKILKMMKRPGSIERT 285

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
            + I + R + PD+ + S FIVGFPGET++DF+  +D + +    +   FK+SP  G   
Sbjct: 286 LERIKKWREICPDLTLRSTFIVGFPGETEEDFQLLLDFLQEAQLDRVGCFKFSPVEGAVA 345

Query: 376 SNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVG 430
           ++M +Q+ E +K E   R + LQ+K+  +++      +G+ + V+I++  +E   G+ + 
Sbjct: 346 TDMEDQIPEEIKEERFHRFMQLQQKISAERLRQK---IGRTLSVIIDEIDEEGIIGRTMA 402

Query: 431 RSPWLQSVV----LNSKNHNIGDIIKVRITDVKISTLYGEL 467
            +P +  VV     +     +G II V IT+     L+GE+
Sbjct: 403 DAPEIDGVVYVDNFSKVEVKLGQIINVTITNADEYDLWGEI 443


>gi|313206267|ref|YP_004045444.1| miab-like tRNA modifying enzyme [Riemerella anatipestifer DSM
           15868]
 gi|312445583|gb|ADQ81938.1| MiaB-like tRNA modifying enzyme [Riemerella anatipestifer DSM
           15868]
 gi|315023051|gb|EFT36064.1| MiaB family protein, possibly involved in tRNA or rRNA modification
           [Riemerella anatipestifer RA-YM]
 gi|325336291|gb|ADZ12565.1| 2-methylthioadenine synthetase [Riemerella anatipestifer RA-GD]
          Length = 448

 Score =  188 bits (477), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 131/422 (31%), Positives = 215/422 (50%), Gaps = 28/422 (6%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N  ++  +       GY++VN  D AD+ V+NTC + E A  +    + R    
Sbjct: 12  TLGCKLNFAETSTIARQLSDAGYQKVNFDDRADVYVINTCSVTENADRECKIHVKRA--- 68

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE--RARFGKR 148
               +K   + LVVV GC AQ + EEI +    V++V+G +  + +   LE       + 
Sbjct: 69  ----MKANPEGLVVVVGCYAQLKPEEISKIEG-VDLVLGAKEKFNILSYLEDLEKAHNEG 123

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           +V   +S E   E      G Y+      AFL +Q+GCD  CT+C +P  RGI  S ++ 
Sbjct: 124 IV---HSCE--IEEADFFIGSYSIGDRTRAFLKVQDGCDYKCTYCTIPLARGISRSDTIE 178

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK---CTFSDLLYSLSEIKGLVRLRY 265
            V+  A+++    + EI L G N+  + GKG  G K    TF DL+  L +++G+ R+R 
Sbjct: 179 NVIKNAQEIATKDIKEIVLTGVNIGDY-GKGEFGNKKHEHTFLDLITELDKVEGIERIRI 237

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
           ++  P  + +  I+        +P+ H+P+QSGSD +LK M RR+    YR  ID I+SV
Sbjct: 238 SSIEPNLLKNESIELVAQSKRFVPHFHIPLQSGSDELLKRMKRRYLTKLYRDRIDTIKSV 297

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P+ AI  D IVGFPGET++ F  T   ++++  +    F YS R  T    M   V  +
Sbjct: 298 MPNAAIGVDVIVGFPGETEERFLETYHFLNELPISYLHIFTYSERENTEAVAMNGVVPIS 357

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG--------RSPWLQS 437
            + +R   L+    +++++F  + +G+ + +L E H  + G + G        + P+ QS
Sbjct: 358 ERKKRNKMLRILSEKKKMAFYQSQLGKTLPILWE-HENKDGMMFGFTENYVRVKKPFDQS 416

Query: 438 VV 439
            V
Sbjct: 417 SV 418


>gi|317497456|ref|ZP_07955776.1| MiaB-like tRNA modifying enzyme [Lachnospiraceae bacterium
           5_1_63FAA]
 gi|316895242|gb|EFV17404.1| MiaB-like tRNA modifying enzyme [Lachnospiraceae bacterium
           5_1_63FAA]
          Length = 440

 Score =  188 bits (477), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 128/446 (28%), Positives = 229/446 (51%), Gaps = 33/446 (7%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +R  + + GC++N Y++  M  M    G   V+  + AD+ ++NTC +   A  K    L
Sbjct: 6   KRAAIVTLGCKVNQYETDAMYGMLKEAGVTMVDPKEAADIYIVNTCSVTNMAERKSRQML 65

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R +       K+  D++VV  GC AQ  G+E L +   +++++G      L  +LE   
Sbjct: 66  HRAK-------KKNLDVVVVAVGCYAQV-GKEELSKDTNIDLIIGNNKKKDLIHILEE-H 116

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNR----------KRGVTAFLTIQEGCDKFCTFCV 194
            G++        E   E + ++D  +++          K    A++ +Q+GC++FC++C+
Sbjct: 117 MGEK--------ESAAESIEVIDIAHDQEYESLHVEQLKEHTRAYIKVQDGCNQFCSYCI 168

Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL 254
           +PY RG   SR + +V++E   L  +G  E  + G +V ++   G D    T +DLL  +
Sbjct: 169 IPYARGRVRSRKMEEVLEEITNLTKHGCQEFVITGIHVTSY---GKDLGDVTLTDLLEEI 225

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
           ++I  + R+R  +  P  ++   +     ++   P+ HL +QSG D +LK MNR++T  +
Sbjct: 226 AKIPEVKRIRLGSLEPGFITKDTLDRLSKMESFCPHFHLSLQSGCDSVLKRMNRKYTTQD 285

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
            R+    IR      A+++D IVGFPGET+++F  T   +++I   +   FKYS R GT 
Sbjct: 286 IREKCKAIREHFQYPALTTDIIVGFPGETEEEFEETRKFLEEIDLYEMHVFKYSIRKGTK 345

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK--HGKEKGKLVGRS 432
            ++M  Q+++ +KA+R   L +  ++ Q  F    +G + EVLIE+  HGK+     G +
Sbjct: 346 AADMKPQINDQIKAKRSNVLLEMSKQHQKEFETKQLGMVKEVLIEEKMHGKDH-YYTGHT 404

Query: 433 PWLQSVVLNSKNHNIGDIIKVRITDV 458
                V L S+      I+KV++  +
Sbjct: 405 KEYIKVALYSEEPLENKIVKVKLRQI 430


>gi|119897316|ref|YP_932529.1| ribosomal protein S12 methylthiotransferase [Azoarcus sp. BH72]
 gi|238065290|sp|A1K487|RIMO_AZOSB RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|119669729|emb|CAL93642.1| hypothetical protein azo1025 [Azoarcus sp. BH72]
          Length = 443

 Score =  187 bits (476), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 145/466 (31%), Positives = 223/466 (47%), Gaps = 50/466 (10%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           VP+  FV S GC     DS  +     ++GYE   S D ADL+V+NTC   + A E+   
Sbjct: 9   VPRVGFV-SLGCPKATSDSEHILTRLRAEGYEISGSYDAADLVVVNTCGFIDAAVEESLD 67

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +G     +N R        V+V GC+  A+ + IL   P V  V GP     + + + R
Sbjct: 68  AIGEALA-ENGR--------VIVTGCLG-AKDDVILAAHPQVLAVTGPHATEEVMQAVHR 117

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
               K          D F  L +   G        A+L I EGC+  CTFC++P  RG  
Sbjct: 118 -HLPKP--------HDPFSDL-VPPQGIRLTPQHYAYLKISEGCNHRCTFCIIPSMRGDL 167

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLL 251
           +SR +  V+ EA  L D GV E+ ++ Q+ +A           W GK +   K    DL 
Sbjct: 168 VSRPIHDVMREAEALADAGVKELLVISQDTSAYGVDVKYRTGFWGGKPV---KTRLYDLA 224

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
            +L E+   +R+ Y   +P       + A G +   +PYL +P Q  S RILK+M R   
Sbjct: 225 NALGELGIWIRMHYVYPYPSVDDLIPLMAEGKI---LPYLDVPFQHASPRILKAMKRPAN 281

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
           A    + + + R + PD+ I S FI GFPGET++DF   +  ++     +  +F YSP  
Sbjct: 282 AENVLERVRKWREICPDLTIRSTFITGFPGETEEDFEQLLQFLEAAQLDRVGAFAYSPVE 341

Query: 372 GTPGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL 428
           G   +++ + V + V+ E   RL+  Q+ +  Q++   +A +G+ + VL++    E+G L
Sbjct: 342 GAAANDLPDAVPDEVREERRARLMDFQEDISTQRL---EAKIGREMTVLVDD-VDEEGAL 397

Query: 429 V---GRSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELVV 469
               G +P +  +V+      +  GD ++VRITD  I  LY E VV
Sbjct: 398 ARSPGDAPEIDGLVVIPDGEGLAPGDFVRVRITDCDIHDLYAERVV 443


>gi|239833929|ref|ZP_04682257.1| MiaB-like tRNA modifying enzyme YliG [Ochrobactrum intermedium LMG
           3301]
 gi|239821992|gb|EEQ93561.1| MiaB-like tRNA modifying enzyme YliG [Ochrobactrum intermedium LMG
           3301]
          Length = 456

 Score =  187 bits (476), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 152/464 (32%), Positives = 225/464 (48%), Gaps = 47/464 (10%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
            P+  FV S GC   + DS R+     S+GYE     D ADL+++NTC   + A ++   
Sbjct: 22  APRVSFV-SLGCPKALVDSERIITSLRSEGYEISRKHDGADLVIVNTCGFLDSARDESLD 80

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +G   N       E G   V+V GC+  AE E I +R P V  + GPQ Y  +   +  
Sbjct: 81  AIGLALN-------ENGK--VIVTGCLG-AEPEVIRQRHPNVLAITGPQAYESVMSAVHE 130

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           A              D F  L    G     R   A+L I EGC   C+FC++P  RG  
Sbjct: 131 AA---------PPAHDPFVDLVPPQGVKLTPRHY-AYLKISEGCSNRCSFCIIPALRGDL 180

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE-----------KCTFSDLL 251
           +SR + QV+ EA KL++ GV EI ++ Q+ +A+   GLD +           +  F DL 
Sbjct: 181 VSRPIDQVLREAEKLVNAGVKEILVISQDTSAY---GLDIKYQEAMWQDRTVRTKFLDLS 237

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
             L E+   VR+ Y   +P       + A G +   +PYL +P Q  S  +LK+M R   
Sbjct: 238 RELGEMGVWVRMHYVYPYPHVDEVIPLMAEGKI---LPYLDIPFQHASPAVLKNMRRPAH 294

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
             +  + I   R   PD+A+ S FIVG+PGET++DF+  +D +D+    +A  FKY P  
Sbjct: 295 QEKTSRRIQAWRETCPDLAVRSTFIVGYPGETEEDFQMLLDWLDEAKIERAGCFKYEPVK 354

Query: 372 GTPGSNM-LEQVDENVKAERLLCLQKKLREQQVSFN--DACVGQIIEVLI-EKHGK-EKG 426
           G   +++ LEQV E +K  R      K  +QQ+S N     VG+ + V+I E +G   KG
Sbjct: 355 GAKANDLGLEQVPEEIKEARWHRFMAK--QQQISTNLLKKKVGKRLPVIIDESNGTVAKG 412

Query: 427 KLVGRSPWLQ-SVVLNSKNH-NIGDIIKVRITDVKISTLYGELV 468
           +    +P +  SV + S+    +GDI+ V+I       L+G  V
Sbjct: 413 RTRYDAPEIDGSVHIQSRRPLRVGDIVTVKIEASDAYDLHGMAV 456


>gi|304392646|ref|ZP_07374586.1| hypothetical protein R2A130_2246 [Ahrensia sp. R2A130]
 gi|303295276|gb|EFL89636.1| hypothetical protein R2A130_2246 [Ahrensia sp. R2A130]
          Length = 434

 Score =  187 bits (476), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 127/397 (31%), Positives = 199/397 (50%), Gaps = 26/397 (6%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V ++GC++N Y++  ME    + G   +    D   +V+NTC + + A       + + R
Sbjct: 10  VVNFGCRLNTYEAAVMEREARAAGLAEL----DGGAVVINTCAVTQSAVADARHAIRKAR 65

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ------TYYRLPELLER 142
                  +E  D  ++V+GC AQ E      +   V++V+G +      +Y  LP+    
Sbjct: 66  -------RERPDARIIVSGCAAQTEAA-TFEQMDEVDLVLGNEEKLHANSYRALPDFGVN 117

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
                RV D  + V++    +  VD    R R   AF+ +Q GCD  CTFC++PY RG  
Sbjct: 118 QFEKVRVADI-FDVQEAASHM--VDAIDGRSR---AFVQVQNGCDHRCTFCIIPYGRGNS 171

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            S     VV++ ++L+ NG  E  L G ++ +W G  L G       +   L ++  L R
Sbjct: 172 RSVPAGGVVEQVKRLVGNGYKEAVLTGVDLTSW-GCDLPGAPKLGRLVQAILKQVPDLTR 230

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LR ++    ++ + L++A G    LMP+LHL +QSG D ILK M RRH   +  +  + +
Sbjct: 231 LRLSSIDSIEVDEPLMEALGSEQRLMPHLHLSLQSGDDMILKRMKRRHLRDDTIRFCEDV 290

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+VRPD+   +D I GFP ETD  F  +M +VD+ G      F YSPR GTP + M   V
Sbjct: 291 RAVRPDVMFGADIIAGFPTETDAMFDNSMRIVDEAGLTHLHVFPYSPRTGTPAAKM-PPV 349

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419
           D      R   L++K  E+  ++  + VG   +VL+E
Sbjct: 350 DGATIKRRAKALREKGSERMNAYLASRVGTTAQVLME 386


>gi|320177831|gb|EFW52817.1| hypothetical protein SGB_05069 [Shigella boydii ATCC 9905]
          Length = 441

 Score =  187 bits (476), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 143/462 (30%), Positives = 234/462 (50%), Gaps = 45/462 (9%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  FV S GC  N+ DS R+     ++GY+ V S DDAD++++NTC   + A ++    
Sbjct: 8   PKIGFV-SLGCPKNLVDSERILTELRTEGYDVVPSYDDADMVIVNTCGFIDSAVQESLEA 66

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G   N       E G   V+V GC+   E ++I    P V  + GP +Y ++ E +   
Sbjct: 67  IGEALN-------ENGK--VIVTGCLGAKE-DQIREVHPKVLEITGPHSYEQVLEHVHH- 115

Query: 144 RFGKRVVDTDYSVEDKFER-LSIV-DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
                     Y  + K    LS+V + G        A+L I EGC+  CTFC++P  RG 
Sbjct: 116 ----------YVPKPKHNPFLSLVPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGD 165

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYS 253
            +SR + +V+ EA++L+D GV EI ++ Q+ +A+      R    +GE  K +   L   
Sbjct: 166 LVSRPIGEVLSEAKRLVDAGVKEILVISQDTSAYGVDVKHRTGFHNGEPVKTSMVSLCEQ 225

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
           LS++    RL Y   +P       + A G +   +PYL +P+Q  S RILK M R  +  
Sbjct: 226 LSKLGIWTRLHYVYPYPHVDDVIPLMAEGKI---LPYLDIPLQHASPRILKLMKRPGSVD 282

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
                I + R + P++ + S FIVGFPGET++DF+  +D + +    +   FKYSP  G 
Sbjct: 283 RQLARIKQWREICPELTLRSTFIVGFPGETEEDFQMLLDFLKEARLDRIGCFKYSPVEGA 342

Query: 374 PGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKL 428
             + + +QV E VK E   R + LQ+++  +++      VG+ I V+I++  +E   G+ 
Sbjct: 343 DANALPDQVPEEVKEERWNRFMQLQQQISAERLQEK---VGREILVIIDEVDEEGAIGRS 399

Query: 429 VGRSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468
           +  +P +   V  +   N+  GDI++V++       L+G  V
Sbjct: 400 MADAPEIDGAVYLNGETNVKPGDILRVKVEHADEYDLWGSRV 441


>gi|213962512|ref|ZP_03390774.1| conserved hypothetical protein [Capnocytophaga sputigena Capno]
 gi|213954838|gb|EEB66158.1| conserved hypothetical protein [Capnocytophaga sputigena Capno]
          Length = 435

 Score =  187 bits (476), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 127/426 (29%), Positives = 211/426 (49%), Gaps = 37/426 (8%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N  ++  +   F   GY RV+  D AD+ V+NTC + E A +       + + +
Sbjct: 8   TLGCKLNFAETSTIARSFEEDGYIRVDFDDPADIYVINTCSVTENADK-------QFKQI 60

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-------ERA 143
               +K      +   GC AQ + EE L     V++V+G +  + + + +       E  
Sbjct: 61  VRKALKTNPKAFLAAVGCYAQLKPEE-LASVDGVDLVLGAKEKFNITQYIDDLTKNNEGI 119

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
                + +TD+ V           G Y+      AFL +Q+GCD  CT+C +P  RGI  
Sbjct: 120 VHSCEISETDFYV-----------GSYSIGDRTRAFLKVQDGCDYKCTYCTIPMARGISR 168

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK---CTFSDLLYSLSEIKGL 260
           S ++  ++  A+K+ D G+ EI L G N+  + GKG  G K    TF +L+ +L +++G+
Sbjct: 169 SDTIENILSNAKKISDKGIKEIVLTGVNIGDY-GKGEFGNKKHEHTFLELVQALDKVEGI 227

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            RLR ++  P  + D  I         +P+ H+P+QSGS+ ILK M RR+    Y   + 
Sbjct: 228 ERLRISSIEPNLIKDETIDFIAQSKSFVPHFHIPLQSGSNEILKKMKRRYLRELYVSRVA 287

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           +IR V PD  I  D IVGFPGETD+ F  T   ++++  +    F YS R  T    M  
Sbjct: 288 KIREVMPDACIGVDVIVGFPGETDEHFLETYHFLNELDISYLHVFTYSERDNTEAVLMEG 347

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-------HGKEKGKLVGRSP 433
            V + V+A+R   L+    +++ +F ++ +G+   VL E        HG  +  +  ++P
Sbjct: 348 VVPDAVRAKRSKMLRGLSVKKRNAFYESQLGKEKTVLFESDNKQGYIHGFTENYVKVKAP 407

Query: 434 WLQSVV 439
           W  ++V
Sbjct: 408 WDPALV 413


>gi|313891928|ref|ZP_07825529.1| ribosomal protein S12 methylthiotransferase RimO [Dialister
           microaerophilus UPII 345-E]
 gi|313119571|gb|EFR42762.1| ribosomal protein S12 methylthiotransferase RimO [Dialister
           microaerophilus UPII 345-E]
          Length = 448

 Score =  187 bits (476), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 127/443 (28%), Positives = 227/443 (51%), Gaps = 32/443 (7%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ D+  M  +  + GYE  N + +A +I++NTC   + A ++    +  I N 
Sbjct: 10  SLGCSKNLVDTEMMVGILQNAGYELTNDLSEAHVIIVNTCTFIDPAKQESIETVLEIANY 69

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA--RFGKR 148
           K    K G    +V AGC+ Q   E + +  P +++ +G  ++  + + ++++  +  ++
Sbjct: 70  K----KTGKCERLVAAGCLTQQYKEALAKEIPEIDIFIGTDSWRNILKAVQKSYEKENEK 125

Query: 149 VVD---TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           + +   T  + E+   R  +    Y       +++ I EGC+K CTFC +P+ RG   SR
Sbjct: 126 IYEFNCTPCASEELIPR-KLTTPSY------MSYIKISEGCNKGCTFCYIPFVRGPMRSR 178

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           ++S ++ E R L   GV E  L+ Q+++ +     DG       LL  L +I  +  +R 
Sbjct: 179 TISSILSEVRNLAKQGVREFNLIAQDLSCYGQDLRDGTSLIL--LLKQLVKIPEVKWIRL 236

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
              +P + +D L+        +  Y+ +P+Q  SD +LK MNR+ T+    +++++IR+ 
Sbjct: 237 FYLYPTNFNDELLDLISKERKICKYIDIPLQHISDNVLKRMNRKDTSESILKLLNKIRNN 296

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P I I +  +VGFPGET+ DF    + + KI +    +FK+SP+ GT  + M  Q+ E+
Sbjct: 297 IPYITIRTTLMVGFPGETESDFEDLCEFIKKIKFDNMGAFKFSPQEGTAAALMQNQISED 356

Query: 386 VKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV--GRSPWL----- 435
           VK +R   L+ +Q  + E+    ND  +G+  EVLIE   K+  KL+  GR+ +      
Sbjct: 357 VKEKRYDKLMSIQAGISEEN---NDLLIGKEAEVLIEDIIKDGEKLIAKGRTSFQAPDVD 413

Query: 436 -QSVVLNSKNHNIGDIIKVRITD 457
             + + N  +   GD +K +I D
Sbjct: 414 GNTYIYNFGDACPGDFVKTKIID 436


>gi|288931237|ref|YP_003435297.1| MiaB-like tRNA modifying enzyme [Ferroglobus placidus DSM 10642]
 gi|288893485|gb|ADC65022.1| MiaB-like tRNA modifying enzyme [Ferroglobus placidus DSM 10642]
          Length = 422

 Score =  187 bits (476), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 138/447 (30%), Positives = 234/447 (52%), Gaps = 33/447 (7%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + ++++YGC MN  DS  M  +  S+ Y   +S ++AD++++NTC +      K+   L 
Sbjct: 2   KVYIETYGCTMNQADSDIMRGLL-SREYAFADSAEEADVVIVNTCGVIGFTERKI---LR 57

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           RI  +K      G    V+ AGC+A+       +R  I + +V P   +R+ E ++    
Sbjct: 58  RIEEIK------GMGKKVIAAGCLARIA----RKRLKIADALVSPDNVHRINEAVKAVLN 107

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNR-KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
           G+RV   + S  DK E    + G   R K    A ++I EGC   C++C     RG   S
Sbjct: 108 GERVEIINVSRVDKAE----ISGVKCRLKENAIAIVSISEGCLGNCSYCATKIARGRLRS 163

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAW-RGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
            S+ ++V+E +K+++ G  EI L  Q+  A+ + KG         DLL  +SEI+G  R+
Sbjct: 164 FSIEKIVEEVKKVVEMGYKEIQLTSQDTGAYGKDKGY-----RLPDLLEKISEIEGDFRV 218

Query: 264 RYTTSHPR---DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
           R    +P+   ++ D LI+A    + +  +LHLPVQSG +++L  M R HT  ++ +++ 
Sbjct: 219 RVGMMNPQHAMEILDDLIEAFKS-EKIYKFLHLPVQSGDNKVLMDMRRGHTVEDFEEVVS 277

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
             R    D+ +S+D IVGFP E+++ F  T++L+ ++        ++SPR GT  +  L+
Sbjct: 278 AFRKAFDDVLLSTDVIVGFPTESEESFEKTVELIKRVKPDIVNITRFSPREGTLAAK-LK 336

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440
            + + +K ER   L K   E  +  N   VG+ + VL+ K GK +  L+ R+   + VVL
Sbjct: 337 DIPDWIKKERSRKLTKICEEIGLENNLKFVGKKLRVLVTKRGKNE-TLLARADSYRPVVL 395

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGEL 467
             +   IG+  + ++ D K + L GEL
Sbjct: 396 --EEGTIGEFYRAKVVDAKFNYLVGEL 420


>gi|117617471|ref|YP_855900.1| hypothetical protein AHA_1361 [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|238065280|sp|A0KHZ9|RIMO_AERHH RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|117558878|gb|ABK35826.1| conserved hypothetical protein [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 442

 Score =  187 bits (475), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 148/461 (32%), Positives = 228/461 (49%), Gaps = 41/461 (8%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
            P+  FV S GC  N+ DS R+     ++GY+ V S DDA+++V+NTC   + A ++   
Sbjct: 7   APKVGFV-SLGCPKNLVDSERILTQLRTEGYDVVPSYDDAEVVVVNTCGFIDSAVQESLE 65

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +G         + E G   V+V GC+   E + I    P V  + GP  Y  +      
Sbjct: 66  AIGEA-------LAENGK--VIVTGCLGAKENQ-IREIHPKVLEITGPHAYEEV------ 109

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
              G      +    + F  L    G     R   A+L I EGC+  CTFC++P  RG  
Sbjct: 110 --LGHVHKYVEKPTHNPFTSLVPAQGVKLTPRHY-AYLKISEGCNHRCTFCIIPSMRGDL 166

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYSL 254
           +SR + +V+ EA++L + GV EI ++ Q+ +A+      R    DG   K +   L   L
Sbjct: 167 VSRPIGEVLAEAKRLKEAGVKEILVISQDTSAYGVDVKHRTGFYDGMPVKTSMVALCEEL 226

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
           +++   VRL Y   +P    D +I    D  VL PYL +P+Q  S RILK M R  T   
Sbjct: 227 AKLGMWVRLHYVYPYPH--VDDVIPLMRDGKVL-PYLDIPLQHASPRILKLMKRPGTVER 283

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
             + I + R + P+I + S FIVGFPGET+++F+  +D +DK    +   FKYSP  G  
Sbjct: 284 TLERIQKWREICPEITLRSTFIVGFPGETEEEFQMLLDFIDKAELDRVGCFKYSPVEGAK 343

Query: 375 GSNMLEQVDENVKAERLLCLQKKLR-EQQVSFNDAC--VGQIIEVLIEKHGKE--KGKLV 429
            + + + V E V+ ER    Q+ +  +QQVS       VG+ + VLI++  +E   G+  
Sbjct: 344 ANELPDPVPEEVQEER---FQRFMELQQQVSIRKLARKVGKEMLVLIDEVDEEGATGRSA 400

Query: 430 GRSPWLQSVV-LNSKNH-NIGDIIKVRITDVKISTLYGELV 468
             +P +  +V LN +     GD++KVRI +     L+  L+
Sbjct: 401 ADAPEIDGLVYLNGETGLKPGDMVKVRIDEADEYDLWASLI 441


>gi|254160912|ref|YP_003044020.1| ribosomal protein S12 methylthiotransferase [Escherichia coli B
           str. REL606]
 gi|253972813|gb|ACT38484.1| predicted SAM-dependent methyltransferase [Escherichia coli B str.
           REL606]
          Length = 441

 Score =  187 bits (475), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 143/462 (30%), Positives = 234/462 (50%), Gaps = 45/462 (9%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  FV S GC  N+ DS R+     ++GY+ V S DDAD++++NTC   + A ++    
Sbjct: 8   PKIGFV-SLGCPKNLVDSERILTELRTEGYDVVPSYDDADMVIVNTCGFIDSAVQESLEA 66

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G   N       E G   V+V GC+   E ++I    P V  + GP +Y ++ E +   
Sbjct: 67  IGEALN-------ENGK--VIVTGCLGAKE-DQIREVHPKVLEITGPHSYEQVLEHVHH- 115

Query: 144 RFGKRVVDTDYSVEDKFER-LSIV-DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
                     Y  + K    LS+V + G        A+L I EGC+  CTFC++P  RG 
Sbjct: 116 ----------YVPKPKHNPFLSLVPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGD 165

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYS 253
            +SR + +V+ EA++L+D GV EI ++ Q+ +A+      R    +GE  K +   L   
Sbjct: 166 LVSRPIGEVLSEAKRLVDAGVKEILVISQDTSAYGVDVKHRTGFHNGEPVKTSMVSLCEQ 225

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
           LS++    RL Y   +P       + A G +   +PYL +P+Q  S RILK M R  +  
Sbjct: 226 LSKLGIWTRLHYVYPYPHVDDVIPLMAEGKI---LPYLDIPLQHASPRILKLMKRPGSVD 282

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
                I + R + P++ + S FIVGFPGET++DF+  +D + +    +   FKYSP  G 
Sbjct: 283 RQLARIKQWREICPELILRSTFIVGFPGETEEDFQMLLDFLKEARLDRVGCFKYSPVEGA 342

Query: 374 PGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKL 428
             + + +QV E VK E   R + LQ+++  +++      VG+ I V+I++  +E   G+ 
Sbjct: 343 DANALPDQVPEEVKEERWNRFMQLQQQISAERLQEK---VGREILVIIDEVDEEGAIGRS 399

Query: 429 VGRSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468
           +  +P +   V  +   N+  GDI++V++       L+G  V
Sbjct: 400 MADAPEIDGAVYLNGETNVKPGDILRVKVEHADEYDLWGSRV 441


>gi|308049930|ref|YP_003913496.1| 30S ribosomal protein S12P methylthiotransferase [Ferrimonas
           balearica DSM 9799]
 gi|307632120|gb|ADN76422.1| SSU ribosomal protein S12P methylthiotransferase [Ferrimonas
           balearica DSM 9799]
          Length = 477

 Score =  187 bits (475), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 144/457 (31%), Positives = 226/457 (49%), Gaps = 48/457 (10%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ DS R+      +GY+ VN+ + ADL+++NTC   + A ++    +G     
Sbjct: 45  SLGCPKNLVDSERILTQLRIEGYDIVNTYEGADLVIVNTCGFIDSAVQESLDTIGE---- 100

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               +KE G +LV   GC+   E +EI +  P V  + GP  Y  + E +  A   K   
Sbjct: 101 ---ALKENGKVLVT--GCLGAKE-DEIKQIHPKVLGITGPHAYEMVLEQV-HAHLPKPEH 153

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
           D   S+        I D G        A+L I EGC+  CTFC++P  RG   SR + ++
Sbjct: 154 DPMTSL--------IPDHGVKLTPRHYAYLKISEGCNHKCTFCIIPSMRGTLDSRPMGEI 205

Query: 211 VDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYSLSEIKG 259
           +DEA++L   GV E+ ++ Q+  A           W G  +   K +   L   L+E   
Sbjct: 206 LDEAKRLQAAGVKELLVISQDTGAYGVDVKHKTAFWNGMPV---KTSMLALCEKLAEFGI 262

Query: 260 LVRLRYTTSHPRDMSDCL-IKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
            VRL Y   +P +++D L + A G +   +PYL +P Q  S RILK M R   A    + 
Sbjct: 263 WVRLHYVYPYP-NIADVLPLMAEGKV---LPYLDIPFQHASPRILKLMKRPGNAERTLEQ 318

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           I   R V PD+ I S FIVGFPGET+ DF+  +D +++    +   FKYSP  G   + +
Sbjct: 319 IKAWREVCPDLVIRSTFIVGFPGETEADFQLLLDWLEEARLDRVGCFKYSPVEGATANEL 378

Query: 379 LEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSP 433
            + VDE VK E   R + +Q ++  ++++     VGQ + V++++ G++   G+    +P
Sbjct: 379 PDAVDEAVKEERYQRFMAVQARISREKLADR---VGQEMLVIVDEIGEDGAIGRSYADAP 435

Query: 434 WLQSVVLNSKNH--NIGDIIKVRITDVKISTLYGELV 468
            +   V+    +  N GD++ V I       L+G LV
Sbjct: 436 EIDGRVIIGGEYDLNPGDMVWVSIEFADDHDLFGTLV 472


>gi|258591968|emb|CBE68273.1| tRNA 2-methylthioadenosine synthase-like protein [NC10 bacterium
           'Dutch sediment']
          Length = 447

 Score =  187 bits (475), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 136/446 (30%), Positives = 217/446 (48%), Gaps = 19/446 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R  +K+ GC+ N  +S  +++     G+  V   D ADL ++NTC + ++A       + 
Sbjct: 2   RVAIKTLGCRQNQCESDAIQESLRRDGHTAVGPDDAADLFIINTCSVTQEADADSRQMIR 61

Query: 86  R-IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE--R 142
           R +R   ++R        VVV GC AQ    EI    P V +V G     +L E++   R
Sbjct: 62  RAVRRNPSAR--------VVVTGCYAQIAAGEIAA-IPGVALVAGNGEKAQLSEMISGLR 112

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            +    +  +D     +F  L    G    +    A L +Q+GC   CTFC+VP TRG  
Sbjct: 113 EQSSPLIAVSDIQQSTRFAPLPPPIGATRSR----ALLKVQDGCSYRCTFCIVPETRGPN 168

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            S+S   V+ + R L+D G  E+ L G ++  + G+ L     + + L+  + E     R
Sbjct: 169 RSQSTDAVLRDLRVLVDAGYPEVVLTGTHLGTY-GRDLS-TGSSIAGLVADMLETAAPAR 226

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LR ++  P ++ + LI   G  + L  +LHLPVQSG + +LK M R HTA ++R++++R+
Sbjct: 227 LRLSSLDPHEVGEELIGCFGRFENLCRHLHLPVQSGDETVLKRMRRPHTADDFRRLVERL 286

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
               P IAI +D IVGFPGE D +F  T  L+D++  A    F YS R GT  + M   V
Sbjct: 287 AETVPGIAIGTDVIVGFPGEGDAEFEQTYRLLDRLPIAYLHVFNYSQRRGTVAAVMPNHV 346

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQ-IIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
            ++V+A R   L+     +  +F    VGQ    V++E      G+L   +    +V + 
Sbjct: 347 PKDVRAARSAALRALSDAKWRAFRQTQVGQSFAAVVLEGRDAPTGRLDALTDNYITVQVE 406

Query: 442 SKNHNIGDIIKVRITDVKISTLYGEL 467
               ++G ++ + I  V      G L
Sbjct: 407 RTEESVGRMVALSIETVTERETIGRL 432


>gi|194433148|ref|ZP_03065430.1| MiaB-like tRNA modifying enzyme YliG [Shigella dysenteriae 1012]
 gi|194418645|gb|EDX34732.1| MiaB-like tRNA modifying enzyme YliG [Shigella dysenteriae 1012]
 gi|332091042|gb|EGI96132.1| RNA modification enzyme, MiaB family protein [Shigella dysenteriae
           155-74]
          Length = 441

 Score =  187 bits (475), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 143/462 (30%), Positives = 234/462 (50%), Gaps = 45/462 (9%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  FV S GC  N+ DS R+     ++GY+ V S DDAD++++NTC   + A ++    
Sbjct: 8   PKIGFV-SLGCPKNLVDSERILTELRTEGYDVVPSYDDADMVIVNTCGFIDSAVQESLEA 66

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G   N       E G   V+V GC+   E ++I    P V  + GP +Y ++ E +   
Sbjct: 67  IGEALN-------ENGK--VIVTGCLGAKE-DQIREVHPKVLEITGPHSYEQVLEHVHH- 115

Query: 144 RFGKRVVDTDYSVEDKFER-LSIV-DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
                     Y  + K    LS+V + G        A+L I EGC+  CTFC++P  RG 
Sbjct: 116 ----------YVPKPKHNPFLSLVPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGD 165

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYS 253
            +SR + +V+ EA++L+D GV EI ++ Q+ +A+      R    +GE  K +   L   
Sbjct: 166 LVSRPIGEVLSEAKRLVDAGVKEILVISQDTSAYGVDVKHRTGFHNGEPVKTSMVSLCEQ 225

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
           LS++    RL Y   +P       + A G +   +PYL +P+Q  S RILK M R  +  
Sbjct: 226 LSKLGIWTRLHYVYPYPHVDDVIPLMAEGKI---LPYLDIPLQHASPRILKLMKRPGSVD 282

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
                I + R + P++ + S FIVGFPGET++DF+  +D + +    +   FKYSP  G 
Sbjct: 283 RQLARIKQWREICPELTLRSTFIVGFPGETEEDFQMLLDFLKEARLDRVGCFKYSPVEGA 342

Query: 374 PGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKL 428
             + + +QV E VK E   R + LQ+++  +++      VG+ I V+I++  +E   G+ 
Sbjct: 343 DTNALPDQVPEEVKEERWNRFMQLQQQISAERLQEK---VGREILVIIDEVDEEGAIGRS 399

Query: 429 VGRSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468
           +  +P +   V  +   N+  GDI++V++       L+G  V
Sbjct: 400 MADAPEIDGAVYLNGETNVKPGDILRVKVEHADEYDLWGSRV 441


>gi|261491925|ref|ZP_05988502.1| 2-methylthioadenine synthetase [Mannheimia haemolytica serotype A2
           str. BOVINE]
 gi|261312392|gb|EEY13518.1| 2-methylthioadenine synthetase [Mannheimia haemolytica serotype A2
           str. BOVINE]
          Length = 445

 Score =  187 bits (475), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 134/460 (29%), Positives = 217/460 (47%), Gaps = 50/460 (10%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ DS R+     + GY  + S ++ADL+++NTC   + A ++    +G     
Sbjct: 11  SLGCPKNLVDSERILTELRADGYNIIPSYENADLVIVNTCGFIDSAVQESLESIGEALEA 70

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
                       V+V GC+   E + I    P V  + GP +Y  +   + +        
Sbjct: 71  NGK---------VIVTGCLGAKENQ-IREVHPKVLEITGPHSYEAVMNHVHK-------- 112

Query: 151 DTDYSVEDKFERLS--IVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
              Y  + +F   +  +   G        A+L I EGCD  CTFC++P  RG   SRS+ 
Sbjct: 113 ---YVPKPEFNPYTSLVPKQGIKLTPKHYAYLKISEGCDHLCTFCIIPSMRGDLASRSIV 169

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNA---------------WRGKGLDGEKCTFSDLLYS 253
           QV+DEA++L+D GV E+ ++ Q+ +A               W G  +     T  + L S
Sbjct: 170 QVLDEAKRLVDAGVKELLIVSQDTSAYSLDRKKEEETKTVFWNGMPIKSNLITLCEQLGS 229

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
           +      VRL Y   +P       + A G +   +PYL +P+Q  S +ILK+M R  +  
Sbjct: 230 MGV---WVRLHYVYPYPHVDDLIPLMAAGKI---LPYLDIPLQHASPKILKAMKRPGSIE 283

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
              + I + R + P++ + S FIVGFPGET++DF+  +D + +    +   FK+SP  G 
Sbjct: 284 RTLERIKKWREICPELTLRSTFIVGFPGETEEDFQLLLDFLKEAQLDRVGCFKFSPVEGA 343

Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGR 431
             ++M +QV E VK ER     +  +E   +   A +G+ ++V+I+   +E   G+ +  
Sbjct: 344 VATDMPDQVPEEVKEERFHRFMQLQQEISAARLQAKIGKTVQVIIDDIDEEGIIGRSMAD 403

Query: 432 SPWLQSVVL--NSKNH--NIGDIIKVRITDVKISTLYGEL 467
           +P +  VV   N  N    +G II V IT      L+G L
Sbjct: 404 APEIDGVVYVDNPSNQLVTVGQIISVTITHADEYDLWGIL 443


>gi|88857374|ref|ZP_01132017.1| hypothetical protein PTD2_02401 [Pseudoalteromonas tunicata D2]
 gi|88820571|gb|EAR30383.1| hypothetical protein PTD2_02401 [Pseudoalteromonas tunicata D2]
          Length = 467

 Score =  187 bits (475), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 140/454 (30%), Positives = 222/454 (48%), Gaps = 44/454 (9%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ DS R+     ++GYE V+S  D+D++++NTC   + A ++    +G     
Sbjct: 39  SLGCPKNLVDSERILTQLRTEGYEVVSSYHDSDVVIVNTCGFIDSAVQESLDTIGEA--- 95

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               +KE G   V+V GC+   E +EI    P V  + GP  Y  + E +    F  +  
Sbjct: 96  ----LKENGK--VIVTGCLGARE-DEIREVHPNVLGITGPHAYENVMEHVHE--FAPK-- 144

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
                V + F  L I D G        A+L I EGC+  CTFC++P  RG  +SR +  V
Sbjct: 145 ----PVLNPFMSL-IPDQGVKLTPKHYAYLKISEGCNHRCTFCIIPSMRGDLVSRPIGDV 199

Query: 211 VDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYSLSEIKG 259
           + EA +L   GV E+ ++ Q+ +A           W G  +   K    +L  +L+++  
Sbjct: 200 LQEAERLKQAGVKELLVISQDTSAYGVDVKSKTGFWNGMPV---KTDMLNLCQALNKLGI 256

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
            VRL Y   +P       + A G L   +PYL +P Q  S RILK M R   A      I
Sbjct: 257 WVRLHYVYPYPHVDDIIPLMAEGKL---LPYLDIPFQHASPRILKMMKRPGQAERTLDRI 313

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            + R + P++ I S FIVGFPGET++DF+  +D +++    +   FKYSP  G   + + 
Sbjct: 314 KKWRQLCPELVIRSTFIVGFPGETEEDFQILLDWLEEAQLDRVGCFKYSPIEGAKANELA 373

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDAC--VGQIIEVLIEKHGKEK--GKLVGRSPWL 435
           E V E +  +R       L++Q +S N     +GQ++EVL+++  +E   G+    +P +
Sbjct: 374 EPVPEEIMQDRFERFM--LKQQAISKNRLALRIGQVMEVLVDEVDEEGAIGRTFADAPEI 431

Query: 436 QSVV-LNSKNH-NIGDIIKVRITDVKISTLYGEL 467
             V+ LN +     GD++KV +       L+G +
Sbjct: 432 DGVIYLNGETDLKPGDVVKVLVEHSDEYDLWGSV 465


>gi|257467710|ref|ZP_05631806.1| Fe-S oxidoreductase [Fusobacterium ulcerans ATCC 49185]
 gi|317062003|ref|ZP_07926488.1| Fe-S oxidoreductase [Fusobacterium ulcerans ATCC 49185]
 gi|313687679|gb|EFS24514.1| Fe-S oxidoreductase [Fusobacterium ulcerans ATCC 49185]
          Length = 432

 Score =  187 bits (475), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 131/455 (28%), Positives = 236/455 (51%), Gaps = 40/455 (8%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +R    + GC++N Y++  +++    + Y      ++AD+ ++N+C +   A  K  + L
Sbjct: 5   KRVAFYTLGCKVNQYETESIKNQLLKKEYTETAFEEEADIYIVNSCTVTSVADRKTRNML 64

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R + +      EG   +V+V GC AQ   +E+L    I + V+G      +   +E   
Sbjct: 65  RRAKKIN----PEG---IVIVTGCYAQTNSKELLEMEEI-DYVIGNSDKNAIVNFIE--- 113

Query: 145 FGKRVVDTDYSVEDKFERLSI-VDGGYNRKRGVT------AFLTIQEGCDKFCTFCVVPY 197
                 D +    +K +  +I +D  Y      T      A++ IQ+GC+ FC++C +P+
Sbjct: 114 ------DIENRTMEKVKNHNIFLDNEYTEYEFATLREMSRAYVKIQDGCNNFCSYCKIPF 167

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257
            RG   SR    ++ E  KL++ G  E+ L+G N+ A+ G+ LD E   F  LL S+ EI
Sbjct: 168 ARGKSRSRKKYNIIKEIEKLVEEGFKEVILIGINLGAY-GEDLD-EGENFESLLKSILEI 225

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
             L R+R  + +P  +SD  +    +   LMP+LH+ +QS  D +LK M R++ +     
Sbjct: 226 NKLERVRIGSVYPDKISDEFMDMFKN-KKLMPHLHISLQSCDDDVLKRMRRKYGSSLIED 284

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
            + +++    D+  ++D IVGFPGET++ F+ + DL++KIG++    F+YS R  T  S+
Sbjct: 285 RLLKLKEKVEDMEYTADVIVGFPGETEEMFQKSYDLIEKIGFSGIHIFQYSDRENTLASS 344

Query: 378 MLEQVDENVK---AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPW 434
             +++D  +K   A+RL  L+ K+ E++    +  +G+ + VL+E+  +E G L G S  
Sbjct: 345 FTDKIDAKIKKERADRLEALKMKMAEKE---REKYIGKHLNVLLEE--RENGYLYGYSEN 399

Query: 435 LQSVVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
              V +      +  II     +VKI++L  E+++
Sbjct: 400 YLRVKVKDNEIKLNSII-----NVKINSLEKEMLI 429


>gi|323191004|gb|EFZ76271.1| RNA modification enzyme, MiaB family protein [Escherichia coli
           RN587/1]
          Length = 441

 Score =  187 bits (475), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 143/462 (30%), Positives = 233/462 (50%), Gaps = 45/462 (9%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  FV S GC  N+ DS R+     ++GY+ V S DDAD++++NTC   + A ++    
Sbjct: 8   PKIGFV-SLGCPKNLVDSERILTELRTEGYDVVPSYDDADMVIVNTCGFIDSAVQESLEA 66

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G   N       E G   V+V GC+   E ++I    P V  + GP +Y ++ E +   
Sbjct: 67  IGEALN-------ENGK--VIVTGCLGAKE-DQIREVHPKVLEITGPHSYEQVLEHVHH- 115

Query: 144 RFGKRVVDTDYSVEDKFER-LSIV-DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
                     Y  + K    LS+V + G        A+L I EGC+  CTFC++P  RG 
Sbjct: 116 ----------YVPKPKHNPFLSLVPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGD 165

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYS 253
            +SR + +V+ EA++L+D GV EI ++ Q+ +A+      R    +GE  K     L   
Sbjct: 166 LVSRPIGEVLSEAKRLVDAGVKEILVISQDTSAYGVDVKHRTGFHNGEPVKTCMVSLCEQ 225

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
           LS++    RL Y   +P       + A G +   +PYL +P+Q  S RILK M R  +  
Sbjct: 226 LSKLGIWTRLHYVYPYPHVDDVIPLMAEGKI---LPYLDIPLQHASPRILKLMKRPGSVD 282

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
                I + R + P++ + S FIVGFPGET++DF+  +D + +    +   FKYSP  G 
Sbjct: 283 RQLARIKQWRKICPELTLRSTFIVGFPGETEEDFQMLLDFLKEARLDRVGCFKYSPVEGA 342

Query: 374 PGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKL 428
             + + +QV E VK E   R + LQ+++  +++      VG+ I V+I++  +E   G+ 
Sbjct: 343 DANALPDQVPEEVKEERWNRFMQLQQQISAERLQEK---VGREILVIIDEVDEEGAIGRS 399

Query: 429 VGRSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468
           +  +P +   V  +   N+  GDI++V++       L+G  V
Sbjct: 400 MADAPEIDGAVYLNGETNVKPGDILRVKVEHADEYDLWGSRV 441


>gi|319789539|ref|YP_004151172.1| MiaB-like tRNA modifying enzyme [Thermovibrio ammonificans HB-1]
 gi|317114041|gb|ADU96531.1| MiaB-like tRNA modifying enzyme [Thermovibrio ammonificans HB-1]
          Length = 441

 Score =  187 bits (475), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 126/447 (28%), Positives = 228/447 (51%), Gaps = 22/447 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +R    + GC+MN +++  +E+ F   GY  V   ++AD+ V+NTC +   A  K    +
Sbjct: 2   KRVAFYTLGCKMNFHETAYLEEQFKGAGYRVVPFEEEADVYVINTCTVTHTADAKSRKAI 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEI--LRRSPIVNVVVGPQTYYRLPELLER 142
            R +  +N +       LVVV GC ++   E++  ++ + ++   V  Q    L E   R
Sbjct: 62  RRAKQ-RNPKA------LVVVTGCYSEVYPEDVEKVKEADLITGNVEKQNLVELVEARLR 114

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
               + VV   +  +  F+RL+I +    R R   AF+ +Q+GC  FCT+C++P  RG  
Sbjct: 115 GELPRTVVKGVWR-DGTFQRLTI-ESFEGRTR---AFVKVQQGCQLFCTYCIIPKARGPM 169

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +S    + + + ++L++ G  EI L G ++ A+   G + E  + + L+    +I GL R
Sbjct: 170 VSLPPQEALSQIKRLVEAGYKEIVLTGTHLGAY---GREFEGWSLARLVEEAVKIPGLYR 226

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LR ++  P + +  LI+     + + P+ H+P+QSGS  +L+ M RR+T  +Y ++I+ +
Sbjct: 227 LRLSSVEPVEFTPHLIEVITGSEKVAPHYHVPLQSGSKSVLERMGRRYTPSDYERVIEEL 286

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
              RP+  + +D +VGFPGE++++F  T++ +  +       F YS R GT  + +   V
Sbjct: 287 VKRRPECCVGTDVMVGFPGESEEEFNETLEFIKSLPLGYLHVFPYSRRRGTVAARLRNSV 346

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
               K  R   L++   E+ V F    +G+ +E L+ K     G +     ++Q+ +LN 
Sbjct: 347 TPQEKRRRGELLREVGTEKSVEFRKRFLGKELEGLVIKQSP-YGSVALTGNYIQT-ILNG 404

Query: 443 KNHNIGDIIKVRITDV--KISTLYGEL 467
           +    G  +K  +T V  K    YGE+
Sbjct: 405 EVPT-GSTVKFTLTKVGRKREENYGEV 430


>gi|317491378|ref|ZP_07949814.1| MiaB tRNA modifying enzyme YliG [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316920925|gb|EFV42248.1| MiaB tRNA modifying enzyme YliG [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 438

 Score =  187 bits (475), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 138/462 (29%), Positives = 226/462 (48%), Gaps = 47/462 (10%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  FV S GC  N+ DS R+     ++GY+ V   DDA+L+++NTC   + A ++    
Sbjct: 4   PRIGFV-SLGCPKNLVDSERILTELRTEGYDVVPRYDDAELVIVNTCGFIDSAVQESLEA 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G   N       E G   V+V GC+   E + I    P V  + GP +Y  + + + + 
Sbjct: 63  IGEALN-------ENGK--VIVTGCLGAKENQ-IREVHPKVLEITGPHSYEAVLKHVHQY 112

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
                         + F  L + + G        A+L I EGC+  CTFC++P  RG   
Sbjct: 113 --------VPKPTHNPFTSL-VPEQGVKLTPKHYAYLKISEGCNHRCTFCIIPSMRGDLD 163

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLY 252
           SR +  V+DEA++L+D GV E+ ++ Q+ +A           W G+ +   K +   L  
Sbjct: 164 SRPIGSVLDEAKRLVDAGVKELLVISQDTSAYGVDVKHRTGFWNGQPV---KTSMISLCE 220

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
            LS +   VRL Y   +P       + A G +   +PYL +P+Q  S +ILK M R    
Sbjct: 221 QLSSLGVWVRLHYVYPYPHVDDVIPLMAEGKV---LPYLDIPLQHASPKILKLMKRPGAV 277

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
               + I R R   P + + S FIVGFPGET++DF+  +D + +    +   FK+SP  G
Sbjct: 278 ERTLERIKRWRETCPQLTLRSTFIVGFPGETEEDFQMLLDFLSEAKLDRVGCFKFSPVEG 337

Query: 373 TPGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GK 427
              + + +QV E VK E   R + LQ+++  Q++      VG  + V+I++  +E   G+
Sbjct: 338 AAANELADQVPEEVKEERFHRFMQLQQQISAQRLQDK---VGHTLPVIIDEVDEEGAIGR 394

Query: 428 LVGRSPWLQSVV-LNSKNH-NIGDIIKVRITDVKISTLYGEL 467
            +  +P +  VV LN +    +GD++ V I +V    ++G +
Sbjct: 395 SMADAPEIDGVVYLNGETKLKVGDVVNVTIENVDEYDMWGSV 436


>gi|227825054|ref|ZP_03989886.1| conserved hypothetical protein [Acidaminococcus sp. D21]
 gi|226905553|gb|EEH91471.1| conserved hypothetical protein [Acidaminococcus sp. D21]
          Length = 442

 Score =  187 bits (475), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 127/438 (28%), Positives = 212/438 (48%), Gaps = 26/438 (5%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V S GC  N+ DS  M  +   + +E  N    AD+I++NTC   E A  +  + + ++ 
Sbjct: 5   VVSLGCPKNLVDSEVMMGLIRDRKWELTNDPSHADIIIVNTCGFIESAKTESINTILQMA 64

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
             K    K      +++ GC+ Q    E+  + P V+ ++G + Y  +  +++R   G+R
Sbjct: 65  EYK----KIDSHRKLIMTGCLGQRYAHELFEQMPEVDAIIGTECYDAIGSVIDRVEKGER 120

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
            V  +   +    +  ++          TA++ I EGC   C++C +P  RG   SR   
Sbjct: 121 FVLLEAPKQYSQPKSRVLSTP-----QYTAYVKIAEGCSNRCSYCAIPKIRGPYRSRPYE 175

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYTT 267
           ++V+E + L+  G  E+ L+ Q+   +   G+D   K   S+LL  L+EI  L  +R   
Sbjct: 176 EIVEEVKSLVQQGTREVILVAQDTTQY---GIDLYHKLRLSELLRDLNEIPALTWIRILY 232

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
            +P   SD LI+       +  Y+ LP+Q  S+ +LK+M RR T  +   ++ ++R+  P
Sbjct: 233 CYPESFSDELIETMAQCKKVCHYVDLPLQHASNSLLKTMRRRDTREQVEMLLAKLRNRMP 292

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
           DI + + FIVGFPGET+  F   +D   K  +  A  F YS    T    M  Q+DE  K
Sbjct: 293 DICLRTTFIVGFPGETEAQFEELLDFAQKEHFQCAGVFTYSQEEETEAGAMKNQIDEATK 352

Query: 388 AE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL-VGRS----PWLQSVV 439
            E   RL+ LQ K+ E+         G+++ VL+E H ++   L V RS    P +   +
Sbjct: 353 QERYHRLMALQAKISEE---IQQEREGKVLTVLVEGHDEKNPDLAVARSYAEAPDIDGKI 409

Query: 440 L--NSKNHNIGDIIKVRI 455
               +K   +GD + V+I
Sbjct: 410 FIEGAKGLRVGDFVNVQI 427


>gi|293602346|ref|ZP_06684792.1| MiaB family RNA modification enzyme [Achromobacter piechaudii ATCC
           43553]
 gi|292819108|gb|EFF78143.1| MiaB family RNA modification enzyme [Achromobacter piechaudii ATCC
           43553]
          Length = 439

 Score =  187 bits (474), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 145/467 (31%), Positives = 236/467 (50%), Gaps = 54/467 (11%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  FV S GC   + DS R+     ++GYE     +DAD++V+NTC   + A  +    
Sbjct: 4   PKVGFV-SLGCPKALVDSERILTQLRTEGYEVTPEYNDADVVVVNTCGFIDSAKAESLEA 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRR-SPIVNVVVGPQTYYRLPELLER 142
           +G         + E G   V+V GC+   E   ++R+  P V  V GPQ Y    E + R
Sbjct: 63  IGEA-------LAENGK--VIVTGCMGVEES--VIRKVHPSVLAVTGPQQY----EEVVR 107

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           A     V D     +D    L +V   G        A+L I EGC+  C+FC++P  RG 
Sbjct: 108 A-----VHDAAPPKQDHNPYLDLVPPQGIKLTPRHYAYLKISEGCNHRCSFCIIPSMRGD 162

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDL 250
            +SR +  V+ EA +L+  GV E+ ++ Q+ +A           W G+ +   K   ++L
Sbjct: 163 LVSRPVGDVLSEAERLVKAGVKEMLVISQDTSAYGVDVKYRSGFWNGRPV---KTRMTEL 219

Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
             +LSE+    RL Y   +P       + A G +   +PYL +P Q  S RILK+M R  
Sbjct: 220 CLALSEMGIWTRLHYVYPYPHVDEVIPLMAEGKI---LPYLDIPFQHASPRILKAMKR-- 274

Query: 311 TAYEYRQI--IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
            A+E + +  I R R + PD+ I S FIVGFPGET++DF+  +D + +    +   F+YS
Sbjct: 275 PAFEDKTLARIKRWREICPDLTIRSTFIVGFPGETEEDFQYLLDWMQEAQLDRVGCFQYS 334

Query: 369 PRLGTPGSNMLEQVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK 425
           P  G P + +   V ++VK    ER + LQ+ +   +++     VG+ I+VLI++  ++ 
Sbjct: 335 PVEGAPANLLDNPVPDDVKQERWERFMQLQQGISTARLARK---VGREIDVLIDEVDEDG 391

Query: 426 --GKLVGRSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468
             G+    +P +   V  S ++ +  GD+++VR+T+     L+GE++
Sbjct: 392 AIGRSSADAPEIDGCVYVSSDNPLKPGDMVRVRVTESDEYDLWGEVI 438


>gi|332882828|ref|ZP_08450439.1| tRNA methylthiotransferase YqeV [Capnocytophaga sp. oral taxon 329
           str. F0087]
 gi|332679330|gb|EGJ52316.1| tRNA methylthiotransferase YqeV [Capnocytophaga sp. oral taxon 329
           str. F0087]
          Length = 435

 Score =  187 bits (474), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 127/426 (29%), Positives = 211/426 (49%), Gaps = 37/426 (8%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N  ++  +   F   GY RV+  D AD+ V+NTC + E A +       + + +
Sbjct: 8   TLGCKLNFAETSTIARSFEEDGYIRVDFDDPADIYVINTCSVTENADK-------QFKQI 60

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-------ERA 143
               +K      +   GC AQ + EE L     V++V+G +  + + + +       E  
Sbjct: 61  VRKALKTNPKAFLAAVGCYAQLKPEE-LASVDGVDLVLGAKEKFNITQYIDDLTKNNEGV 119

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
                + +TD+ V           G Y+      AFL +Q+GCD  CT+C +P  RGI  
Sbjct: 120 VHSCEIAETDFYV-----------GSYSIGDRTRAFLKVQDGCDYKCTYCTIPMARGISR 168

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK---CTFSDLLYSLSEIKGL 260
           S ++  ++  A+K+ D G+ EI L G N+  + GKG  G K    TF +L+ +L +++G+
Sbjct: 169 SDTIENILSNAKKISDKGIKEIVLTGVNIGDY-GKGEFGNKKHEHTFLELVEALDKVEGI 227

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            RLR ++  P  + D  I      +  +P+ H+P+QSGS+ ILK M RR+    Y   + 
Sbjct: 228 ERLRISSIEPNLIKDETIDFIAQSNSFVPHFHIPLQSGSNEILKKMKRRYLRELYVSRVA 287

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           +IR V PD  I  D IVGFPGETD+ F  T   ++ +  +    F YS R  T    M  
Sbjct: 288 KIREVMPDACIGVDVIVGFPGETDELFLETYYFLNDLDISYLHVFTYSERDNTEAVLMDG 347

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-------HGKEKGKLVGRSP 433
            V + V+A+R   L+    +++ +F ++ +G+   VL E        HG  +  +  ++P
Sbjct: 348 VVPDEVRAKRSKMLRGLSAKKRNAFYESQLGKEKTVLFESDNKQGYIHGFTENYVKVKAP 407

Query: 434 WLQSVV 439
           W  ++V
Sbjct: 408 WDPALV 413


>gi|227325860|ref|ZP_03829884.1| hypothetical protein PcarcW_00499 [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 435

 Score =  187 bits (474), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 136/456 (29%), Positives = 224/456 (49%), Gaps = 46/456 (10%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ DS R+     ++GY+ V   DDA+L+++NTC   + A ++    +G   N 
Sbjct: 8   SLGCPKNLVDSERILTELRTEGYQVVPRYDDAELVIVNTCGFIDSAVQESLEAIGEALN- 66

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
                 E G   V+V GC+   E + I    P V  + GP +Y ++   + +        
Sbjct: 67  ------ENGK--VIVTGCLGAKENQ-IREVHPKVLEITGPHSYEQVLSHVHQY------- 110

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
                  + F  L + + G        A+L I EGC+  CTFC++P  RG   SR +  V
Sbjct: 111 -VPKPTHNPFTSL-VPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGDLDSRPIGSV 168

Query: 211 VDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYSLSEIKG 259
           +DEA++L+D GV E+ ++ Q+ +A           W G+ +   K +   L   L+ +  
Sbjct: 169 LDEAKRLVDAGVKELLVISQDTSAYGADVKQRTGFWNGQPV---KTSMVSLCEQLASLGV 225

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
            VRL Y   +P       + A G +   +PYL +P+Q  S +ILK M R        + I
Sbjct: 226 WVRLHYVYPYPHVDDVIPLMAEGKI---LPYLDIPLQHASPKILKLMKRPGAVERTLERI 282

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            R R + PD+ + S FIVGFPGET++DF+  +D + +    +   FK+SP  G   + + 
Sbjct: 283 KRWREICPDLTLRSTFIVGFPGETEEDFQMLLDFLKEAKLDRVGCFKFSPVEGAAANELP 342

Query: 380 EQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPW 434
           +QV E VK E   R + LQ+ +  Q++      +G+ + VLI++  +E   G+ +  +P 
Sbjct: 343 DQVPEEVKEERFHRFMQLQQAISTQRLQDK---IGREVLVLIDEIDEEGAIGRSMADAPE 399

Query: 435 LQ-SVVLNSKNH-NIGDIIKVRITDVKISTLYGELV 468
           +  +V LN +    +GDI+KV++       L+G  V
Sbjct: 400 IDGAVYLNGETGVKVGDIVKVKVEHADEYDLWGSRV 435


>gi|206579256|ref|YP_002239518.1| MiaB-like tRNA modifying enzyme YliG [Klebsiella pneumoniae 342]
 gi|288936365|ref|YP_003440424.1| RNA modification enzyme, MiaB family [Klebsiella variicola At-22]
 gi|290510579|ref|ZP_06549949.1| MiaB-like tRNA modifying enzyme YliG [Klebsiella sp. 1_1_55]
 gi|238066342|sp|B5XYQ3|RIMO_KLEP3 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|206568314|gb|ACI10090.1| MiaB-like tRNA modifying enzyme YliG [Klebsiella pneumoniae 342]
 gi|288891074|gb|ADC59392.1| RNA modification enzyme, MiaB family [Klebsiella variicola At-22]
 gi|289777295|gb|EFD85293.1| MiaB-like tRNA modifying enzyme YliG [Klebsiella sp. 1_1_55]
          Length = 441

 Score =  187 bits (474), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 141/462 (30%), Positives = 237/462 (51%), Gaps = 51/462 (11%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  FV S GC  N+ DS R+     ++GY+ V + D+AD++++NTC   + A ++    
Sbjct: 8   PKIGFV-SLGCPKNLVDSERILTELRTEGYDVVPTYDNADMVIVNTCGFIDSAVQESLEA 66

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G         +KE G   V+V GC+   E ++I    P V  + GP +Y ++ E +   
Sbjct: 67  IGEA-------LKENGK--VIVTGCLGAKE-DQIREVHPKVLEITGPHSYEQVLEHVHH- 115

Query: 144 RFGKRVVDTDYSVEDKFER-LSIV-DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
                     YS + K    LS+V + G        A+L I EGC+  CTFC++P  RG 
Sbjct: 116 ----------YSPKPKHNPFLSLVPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGD 165

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE-----------KCTFSDL 250
            +SR + +V+ EA++L D GV E+ ++ Q+ +A+   G+D +           K +   L
Sbjct: 166 LVSRPIGEVLAEAKRLADAGVKELLVISQDTSAY---GVDVKHRTGFHNGMPVKTSMVSL 222

Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
              L+++   VRL Y   +P       + A G +   +PYL +P+Q  S RILK M R  
Sbjct: 223 CEELAKLGIWVRLHYVYPYPHVDDVIPLMAEGKI---LPYLDIPLQHASPRILKLMKRPG 279

Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370
           +A      I + R + PD+ + S FIVGFPGET++DF+  +D + +    +   FKYSP 
Sbjct: 280 SADRQLARIKQWREICPDLTLRSTFIVGFPGETEEDFQMLLDFLKEARLDRVGCFKYSPV 339

Query: 371 LGTPGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-- 425
            G   + + +QV E VK E   R + LQ+++  +++      VG+ I VL+++  +E   
Sbjct: 340 EGATANELADQVPEEVKEERWNRFMQLQQQISAERLQEK---VGREILVLVDEVDEEGAI 396

Query: 426 GKLVGRSPWLQ-SVVLNSKNH-NIGDIIKVRITDVKISTLYG 465
           G+ +  +P +  +V LN +     GD+++V++       L+G
Sbjct: 397 GRSMADAPEIDGAVYLNGETRVKPGDVVRVKVEHADEYDLWG 438


>gi|291559329|emb|CBL38129.1| MiaB-like tRNA modifying enzyme [butyrate-producing bacterium
           SSC/2]
          Length = 440

 Score =  187 bits (474), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 128/446 (28%), Positives = 228/446 (51%), Gaps = 33/446 (7%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +R  + + GC++N Y++  M  M    G   V+  + AD+ ++NTC +   A  K    L
Sbjct: 6   KRAAIVTLGCKVNQYETDAMYGMLKEAGVTMVDPKEAADIYIVNTCSVTNMAERKSRQML 65

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R +       K+  D++VV  GC AQ  G+E L +   +++++G      L  +LE   
Sbjct: 66  HRAK-------KKNPDVVVVAVGCYAQV-GKEELSKDTNIDLIIGNNKKKDLIHILEE-H 116

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNR----------KRGVTAFLTIQEGCDKFCTFCV 194
            G++        E   E + ++D  +++          K    A++ +Q+GC++FC++C+
Sbjct: 117 MGEK--------ESAAESIEVIDIAHDQEYESLHVEQLKEHTRAYIKVQDGCNQFCSYCI 168

Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL 254
           +PY RG   SR + +V++E   L  +G  E  + G +V ++   G D    T  DLL  +
Sbjct: 169 IPYARGRVRSRKMEEVLEEITNLTKHGCQEFVITGIHVTSY---GKDLGDVTLIDLLEEI 225

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
           ++I  + R+R  +  P  ++   +     ++   P+ HL +QSG D +LK MNR++T  +
Sbjct: 226 AKIPEVKRIRLGSLEPGFITKDTLDRLSKMESFCPHFHLSLQSGCDSVLKRMNRKYTTQD 285

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
            R+    IR      A+++D IVGFPGET+++F  T   +++I   +   FKYS R GT 
Sbjct: 286 IREKCKAIREHFQYPALTTDIIVGFPGETEEEFEETRKFLEEIDLYEMHVFKYSIRKGTK 345

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK--HGKEKGKLVGRS 432
            ++M  Q+++ +KA+R   L +  ++ Q  F    +G + EVLIE+  HGK+     G +
Sbjct: 346 AADMKPQINDQIKAKRSNVLLEMSKQHQKEFETKQLGMVKEVLIEEKMHGKDH-YYTGHT 404

Query: 433 PWLQSVVLNSKNHNIGDIIKVRITDV 458
                V L S+      I+KV++  +
Sbjct: 405 KEYIKVALYSEEPLENKIVKVKLRQI 430


>gi|183600133|ref|ZP_02961626.1| hypothetical protein PROSTU_03669 [Providencia stuartii ATCC 25827]
 gi|188022422|gb|EDU60462.1| hypothetical protein PROSTU_03669 [Providencia stuartii ATCC 25827]
          Length = 444

 Score =  187 bits (474), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 141/468 (30%), Positives = 233/468 (49%), Gaps = 55/468 (11%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           VP+  FV S GC  N+ DS R+     + GY+ V S DDADL+++NTC   + A ++   
Sbjct: 8   VPKIGFV-SLGCPKNLVDSERILTELRTDGYQVVPSYDDADLVIVNTCGFIDSAVQESLE 66

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +G   N       E G   V+V GC+   E + I    P V  + GP +Y         
Sbjct: 67  AIGEALN-------ENGK--VIVTGCLGAKENQ-IREVHPKVLEITGPHSY--------- 107

Query: 143 ARFGKRVVDTDYSVEDKFER---LSIV-DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
               ++V++  +    K E    LS+V + G        A+L I EGC+  CTFC++P  
Sbjct: 108 ----EQVLNHVHHYVPKPEHDPFLSLVPEQGVKLTPKHYAYLKISEGCNHRCTFCIIPSM 163

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTF 247
           RG   SR++  V++EA++L+++GV E+ ++ Q+ +A           W GK +   K + 
Sbjct: 164 RGDLDSRAIGDVLNEAKRLVESGVKELLVISQDTSAYGVDVKHRTGFWEGKPV---KTSM 220

Query: 248 SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307
             L   L+ +   VRL Y   +P       + A G +   +PYL +P+Q  S +ILK M 
Sbjct: 221 VGLCEQLASLGVWVRLHYVYPYPHVDEVIPLMAEGKV---LPYLDIPLQHASPKILKLMK 277

Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           R        + I R R + P++ + S FIVGFPGET++DF+  +D + +    +   FKY
Sbjct: 278 RPGAVERTLERIKRWREICPELTLRSTFIVGFPGETEEDFQMLLDFLQEARLDRVGCFKY 337

Query: 368 SPRLGTPGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE 424
           SP  G   + + +QV E VK E   R + LQ+++  +++      +G+ + V+I++   E
Sbjct: 338 SPVEGAKANELADQVPEEVKEERYHRFMQLQQQISTERLQEK---IGRKLPVIIDEVDDE 394

Query: 425 K--GKLVGRSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468
              G+ +  +P +  +V  +   ++  GDI+ V I       L+G +V
Sbjct: 395 GAIGRSMADAPEIDGMVYLNGEFDVKPGDIVNVLIEHADEYDLWGSIV 442


>gi|118591328|ref|ZP_01548726.1| hypothetical protein SIAM614_26813 [Stappia aggregata IAM 12614]
 gi|118436000|gb|EAV42643.1| hypothetical protein SIAM614_26813 [Stappia aggregata IAM 12614]
          Length = 422

 Score =  187 bits (474), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 141/444 (31%), Positives = 217/444 (48%), Gaps = 38/444 (8%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRI- 87
           V ++GC++N Y+S  M+    + G +        D I++NTC +  +A  +    + +  
Sbjct: 5   VVTFGCRLNAYESEVMKREAEAAGLK--------DAILVNTCAVTGEAVRQARQAVRKAK 56

Query: 88  RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG- 146
           R+  N+R        V+V GC AQ E E        V++V+G           + A FG 
Sbjct: 57  RDNPNAR--------VIVTGCAAQTESETFSSMEE-VDLVLGNTEKLERKSYQDVAAFGV 107

Query: 147 ----KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
               K  V+   SVE+    L  +DG   R R   AF+ +Q GCD  CTFC++PY RG  
Sbjct: 108 SETEKVRVNDIMSVEETAGHL--IDGLTGRAR---AFVQVQNGCDHRCTFCIIPYGRGNS 162

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            S  +  V+D+ ++L+ NG  EI L G ++ ++ G  L G     +     L  +  L R
Sbjct: 163 RSVPMGVVIDQIKRLVGNGYNEIVLTGVDITSY-GADLPGTPKLGTLSAKILKMVPELKR 221

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LR ++    +  D L++   + + LMP+LHL +Q+G D ILK M RRH   +  +  + +
Sbjct: 222 LRLSSIDSIEADDDLMRVIAEDERLMPHLHLSLQAGDDMILKRMKRRHLRADTIRFCEEV 281

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R +RPD+   +D I GFP ET++ F+ ++ +VD+        F +SPR GTP + M  Q+
Sbjct: 282 RRLRPDMVFGADIIAGFPTETEEMFQNSLRIVDECDLTHLHVFPFSPRKGTPAARM-PQL 340

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
             +V  ER   L+ K  E  V    A VG+   VLIEK G      +GR+     V L  
Sbjct: 341 PRDVVKERGARLRAKGEEALVRHLQAEVGKTRPVLIEKEG------LGRTEQFTQVELGG 394

Query: 443 KNHNIGDIIKVRITDVKISTLYGE 466
                G+I++ RI       L GE
Sbjct: 395 G--TAGEIVETRIVGHTGRHLLGE 416


>gi|86132712|ref|ZP_01051304.1| MiaB-like tRNA modifying enzyme [Dokdonia donghaensis MED134]
 gi|85816666|gb|EAQ37852.1| MiaB-like tRNA modifying enzyme [Dokdonia donghaensis MED134]
          Length = 447

 Score =  187 bits (474), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 135/432 (31%), Positives = 215/432 (49%), Gaps = 44/432 (10%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N  ++  +   F  +G+++V+  + AD+ V+NTC + E A +       R +N+
Sbjct: 11  TLGCKLNFSETSTIARSFGKEGFDKVDFSEAADVYVINTCSVTENADK-------RFKNI 63

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-------ERA 143
                K   D + V  GC AQ + EE L     V++V+G    + +   +       +RA
Sbjct: 64  VKQAQKANPDAVKVAVGCYAQLKPEE-LAAVDGVDLVLGATEKFNVTSYINDLLNNPDRA 122

Query: 144 RFGKRV-----VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
           R G  V      D D+ V       SI D    R R   AFL +Q+GCD  CT+C +P  
Sbjct: 123 RDGGEVHACEIQDADFYVSS----YSIGD----RTR---AFLKVQDGCDYKCTYCTIPLA 171

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK---CTFSDLLYSLS 255
           RGI  S +L  V+D A K+    + EI L G N+  + GKG  G K    TF +L+  L 
Sbjct: 172 RGISRSDTLQNVLDNAAKIAAQDIKEIVLTGVNIGDY-GKGEFGNKKHEHTFLELVQELD 230

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
            + G+ RLR ++  P  + +  I+   +    +P+ H+P+QSGS++IL  M RR+    Y
Sbjct: 231 RVDGIERLRISSIEPNLLKNETIEVVSNSRTFVPHFHIPLQSGSNKILGLMRRRYQRELY 290

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
              + +I+ V P   I  D IVGFPGETD+DF  T + ++ +  +    F YS R  TP 
Sbjct: 291 VDRVAKIKEVMPHACIGVDVIVGFPGETDEDFLETYNFLNSLDISYLHVFTYSERDNTPA 350

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG----- 430
           + M   V +NV+++R   L+    + + +F ++ +     VL E   KE G + G     
Sbjct: 351 ATMDGVVPKNVRSKRSKMLRGLSAKMRRAFYESQLDTKRTVLFESENKE-GYIHGFTENY 409

Query: 431 ---RSPWLQSVV 439
              ++PW   +V
Sbjct: 410 VKVKAPWNPELV 421


>gi|269837323|ref|YP_003319551.1| MiaB-like tRNA modifying enzyme [Sphaerobacter thermophilus DSM
           20745]
 gi|269786586|gb|ACZ38729.1| MiaB-like tRNA modifying enzyme [Sphaerobacter thermophilus DSM
           20745]
          Length = 449

 Score =  187 bits (474), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 124/411 (30%), Positives = 208/411 (50%), Gaps = 28/411 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           RF + + GC++N  D   +       G + V+   +A++ ++NTC + + A  +    L 
Sbjct: 19  RFAICTLGCKLNQSDEADLRRSLRQAGLQEVDFGSEAEVYIVNTCTVTQLADRRSRQMLR 78

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGP-QTYYRLPELLERAR 144
           R         ++  + LV   GC      +E L   P V++VVG  +    + E+L R  
Sbjct: 79  RAH-------RQNPEALVAAIGCYPAVNPDE-LHAMPEVDIVVGSIEKATVVDEILGRLD 130

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
           +  +  D+D  VE    R                 + IQEGC   CT+C++P  RG   +
Sbjct: 131 WENQAFDSDEPVEHVETR-------------TRRMIKIQEGCRAHCTYCIIPRARGAPRN 177

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC-TFSDLLYSLSEIKGLVRL 263
            + ++VV   ++ ID G  E+ L G +V  +  K  +G++    +DLL  + E   + RL
Sbjct: 178 VAPAEVVRRVQEAIDEGYREVVLTGTHVGTY--KWPEGDRTLRLADLLELVLEATTIERL 235

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R T+  P ++ +  I A  +   + P+LH+ +QSGS+ +L+ M R +   ++R+ + R+R
Sbjct: 236 RVTSVGPHEIDERFI-ALVNHPRMAPHLHMALQSGSETVLRRMKRWYNTRQFRRAVRRLR 294

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              PDIAI++D IVGFPGETD++F  T D V ++G+A+   F +SPR  TP + M +QV 
Sbjct: 295 EEVPDIAITTDVIVGFPGETDEEFAETCDFVREMGFAKLHVFPFSPRKDTPAAAMPDQVH 354

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPW 434
             VK  R   L+    E   +F    +G+ + VL+E+  ++     GRS W
Sbjct: 355 PRVKERRAAELRAIGDELHAAFVARHLGREVRVLVEQVAEQLPD--GRSLW 403


>gi|83594143|ref|YP_427895.1| ribosomal protein S12 methylthiotransferase [Rhodospirillum rubrum
           ATCC 11170]
 gi|123725878|sp|Q2RQI7|RIMO_RHORT RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|83577057|gb|ABC23608.1| conserved hypothetical protein [Rhodospirillum rubrum ATCC 11170]
          Length = 441

 Score =  187 bits (474), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 143/464 (30%), Positives = 225/464 (48%), Gaps = 51/464 (10%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           Q+  + S GC   + DS R+     ++GYE   + DDA+++++NTC   + A  +    +
Sbjct: 6   QKVGIVSLGCPKALVDSERILTRLRAEGYEVSPTYDDANVVIVNTCGFLDSAKAESLEAI 65

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRS--PIVNVVVGPQTYYRLPELLER 142
           G     +N R        V+V GC+    G+E   RS  P V  V GPQ Y R+   +  
Sbjct: 66  GEAMA-QNGR--------VIVTGCMG---GDEAAIRSAHPGVLAVTGPQQYERVVAAVHE 113

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           A              D +  L   +G     R   A+L I EGC+  CTFC++P  RG  
Sbjct: 114 AA---------PPAHDPYLDLVPAEGIRLTPRHY-AYLKISEGCNHGCTFCIIPDLRGKL 163

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLL 251
           +SR  S+V+ EA KL + GV E+ ++ Q+ +A           W G  +   K   ++L 
Sbjct: 164 VSRPASKVLMEAEKLAEAGVRELLVISQDTSAYGVDLRHGESPWHGAPV---KARMTELC 220

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
            +L E+   VRL Y   +P       + A G +   +PYL +P Q  S +IL++M R   
Sbjct: 221 SALGELGIWVRLHYVYPYPFVDEIIPLMAEGKI---LPYLDIPFQHASPKILEAMKRPAA 277

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
                + I R R++ PDIA+ S FIVGFPGET+DDF+  +D + +    +   FKY    
Sbjct: 278 QDRTLERIRRWRTICPDIALRSTFIVGFPGETEDDFQQLLDWMGEAELDRVGCFKYEAVA 337

Query: 372 GTPGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--G 426
           G   + + + V E VK E   R +  Q+++ E++++     VG +IE +I++  +E   G
Sbjct: 338 GAKANALADAVPEEVKEERWHRFMAAQQEISERRLAQK---VGTVIEAIIDEVDEEGAIG 394

Query: 427 KLVGRSPWLQ-SVVLNSKNH-NIGDIIKVRITDVKISTLYGELV 468
           +  G +P +  S+ LN +     GDI+ V I       L+G L 
Sbjct: 395 RTKGDAPEIDGSLFLNGETSLAPGDIVPVLIEHADEYDLWGSLA 438


>gi|261856499|ref|YP_003263782.1| MiaB-like tRNA modifying enzyme YliG [Halothiobacillus neapolitanus
           c2]
 gi|261836968|gb|ACX96735.1| MiaB-like tRNA modifying enzyme YliG [Halothiobacillus neapolitanus
           c2]
          Length = 454

 Score =  187 bits (474), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 142/476 (29%), Positives = 226/476 (47%), Gaps = 65/476 (13%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  FV S GC   + DS R+     ++GY   +   DA+L+++NTC   + A ++    
Sbjct: 6   PRVGFV-SLGCPKALVDSERILTQLRAEGYALSSDYQDAELVIVNTCGFIDSATQESLDA 64

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCV-AQAEGEEILRRSPIVNVVVGPQTY--------- 133
           +G         + E G   V+V GC+ A+ EGE I +  P V  + GPQ Y         
Sbjct: 65  IGEA-------LTENGK--VIVTGCLGARDEGELIRQTHPSVLAITGPQAYGEVMGAVHQ 115

Query: 134 YRLP------ELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCD 187
           Y  P      +L+   R    V D +  V            G        A+L I EGC+
Sbjct: 116 YLPPRHDPFVDLMPAPRVQTEVSDFESKV------------GIKLTPRHYAYLKISEGCN 163

Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE---- 243
             C+FC++P  RG  +SR + +V+ EA+ L++ GV E+ ++ Q+ +A+   GLD      
Sbjct: 164 HRCSFCIIPSMRGDLVSRPVGEVLTEAQNLVNAGVRELLVVSQDTSAY---GLDTRYKLD 220

Query: 244 -------KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQ 296
                  K  F +L   L ++   +RL Y   +P       + A G   +++PYL +P Q
Sbjct: 221 FFGGKPVKTRFKELAAELGQMDAWIRLHYVYPYPHVDEVIPLMAEG---LVLPYLDIPFQ 277

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVR---PDIAISSDFIVGFPGETDDDFRATMDL 353
             S RILK+M R  ++     ++ RIR+ R   PD+ + S FIVGFPGET+DDF+  +D 
Sbjct: 278 HASPRILKAMKRPASS---ENVLARIRTWRDVCPDLTLRSTFIVGFPGETEDDFQQLLDF 334

Query: 354 VDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQI 413
           +D+    +  +F YSP  G   + + + V E++K ERL     K  E   +     VGQ 
Sbjct: 335 LDEAQLDRVGAFTYSPVEGATANQLAKPVPESLKQERLERFMAKQAEISAAKLAVKVGQR 394

Query: 414 IEVLIEK--HGKEKGKLVGRSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYG 465
           + +LI++       G+  G +P +  VV      ++  GD ++V IT      L+ 
Sbjct: 395 MAILIDEVDESGAVGRGPGDAPEIDGVVFLPDVTDVRPGDFVEVEITAADEHDLWA 450


>gi|324112729|gb|EGC06705.1| MiaB tRNA modifying enzyme YliG [Escherichia fergusonii B253]
          Length = 441

 Score =  187 bits (474), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 142/462 (30%), Positives = 232/462 (50%), Gaps = 45/462 (9%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  FV S GC  N+ DS R+     ++GY+ V S DDAD++++NTC   + A ++    
Sbjct: 8   PKIGFV-SLGCPKNLVDSERILTELRTEGYDVVPSYDDADMVIVNTCGFIDSAVQESLEA 66

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G   N       E G   V+V GC+   E ++I    P V  + GP +Y ++ E +   
Sbjct: 67  IGEALN-------ENGK--VIVTGCLGAKE-DQIREVHPKVLEITGPHSYEQVLEHVHH- 115

Query: 144 RFGKRVVDTDYSVEDKFER-LSIV-DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
                     Y  + K    LS+V + G        A+L I EGC+  CTFC++P  RG 
Sbjct: 116 ----------YVPKPKHNPFLSLVPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGD 165

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYS 253
            +SR +  V+ EA++L+D GV EI ++ Q+ +A+      R    +GE  K +   L   
Sbjct: 166 LVSRPIGDVLSEAKRLVDAGVKEILVISQDTSAYGVDVKHRTGFYNGEPVKTSMVSLCEQ 225

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
           LS++    RL Y   +P       + A G +   +PYL +P+Q  S RILK M R  +  
Sbjct: 226 LSKLGIWTRLHYVYPYPHVDDVIPLMAEGKI---LPYLDIPLQHASPRILKLMKRPGSVD 282

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
                I + R + P++ + S FIVGFPGET++DF+  +D + +    +   FK+SP  G 
Sbjct: 283 RQLARIKQWREICPELTLRSTFIVGFPGETEEDFQMLLDFLKEARLDRVGCFKFSPVEGA 342

Query: 374 PGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKL 428
             + + +QV E VK E   R + LQ+++  +++      VG+ I V+I++   E   G+ 
Sbjct: 343 DANALPDQVPEEVKEERWNRFMQLQQQISAERLQEK---VGKEILVIIDEVDDEGAIGRS 399

Query: 429 VGRSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468
           +  +P +   V  +   N+  GDI++V++       L+G  V
Sbjct: 400 MADAPEIDGAVYLNGESNVKPGDIVRVKVEHADEYDLWGSRV 441


>gi|302872168|ref|YP_003840804.1| MiaB-like tRNA modifying enzyme YliG [Caldicellulosiruptor
           obsidiansis OB47]
 gi|302575027|gb|ADL42818.1| MiaB-like tRNA modifying enzyme YliG [Caldicellulosiruptor
           obsidiansis OB47]
          Length = 441

 Score =  187 bits (474), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 133/454 (29%), Positives = 231/454 (50%), Gaps = 35/454 (7%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ DS  M       G+E  ++ +DAD+IV+NTC     A ++    +  +   
Sbjct: 8   SLGCNKNLVDSEIMMGACVEAGFEITSNAEDADVIVVNTCGFINDAKQESIDTILDMAEY 67

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
           KN + K      ++V GC+ Q   +EIL + P ++ ++G +   +LP++++    GK+ +
Sbjct: 68  KNKKCK-----FLIVTGCLTQRYKDEILEQMPEIDAILGVKEMLKLPDVIKDLYEGKQRI 122

Query: 151 D-----TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                 + +       R+      Y       A++ I EGC+  C++C +P  RG   SR
Sbjct: 123 KVFNDASSFVYSSSMPRVIATPSYY-------AYIKIAEGCNNRCSYCSIPLIRGKYTSR 175

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            +  +V EA++L + G  EI L  Q+   + G  + G+K     LL  L +I+ +  +R+
Sbjct: 176 PIEDIVREAKELAERGYKEIILTAQDTTKY-GTDIYGKK-MLPALLEELEKIEKIKWIRF 233

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
             S+P D+ +  +        ++ Y  +PVQ  +DRILK MNR+ T    R++I++IR  
Sbjct: 234 LYSYPEDLDENFVNVVKFSSKVVNYFDIPVQHVNDRILKLMNRKSTKESIRRLIEKIRES 293

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
             ++ I +  +VGFP ETD++F      +    + +  +F YS   GT  S  L QVDE+
Sbjct: 294 FDEVVIRTTILVGFPTETDEEFEELCSFLKWAEFDRLGAFMYSQEEGTLASQ-LPQVDED 352

Query: 386 VKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL-VGRSPWLQ----- 436
           +K    E++L +Q+K+ ++Q   N   +G+  EV+IE   K++    +GRS +       
Sbjct: 353 IKQRRYEKVLNIQRKISKKQ---NRKRIGKEYEVVIE--AKDRNNFYIGRSQFEAPEVDG 407

Query: 437 SVVLNSKNH-NIGDIIKVRITDVKISTLYGELVV 469
            V++ SKN    G  +KV+I D     L GE+++
Sbjct: 408 KVLVFSKNRLTAGQFVKVKILDAFEYDLVGEIIL 441


>gi|329121012|ref|ZP_08249643.1| MiaB family RNA modification enzyme [Dialister micraerophilus DSM
           19965]
 gi|327471174|gb|EGF16628.1| MiaB family RNA modification enzyme [Dialister micraerophilus DSM
           19965]
          Length = 448

 Score =  187 bits (474), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 127/443 (28%), Positives = 227/443 (51%), Gaps = 32/443 (7%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ D+  M  +  + GYE  N + +A +I++NTC   + A ++    +  I N 
Sbjct: 10  SLGCSKNLVDTEMMVGILQNAGYELTNDLSEAHVIIVNTCTFIDPAKQESIETVLEIANY 69

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA--RFGKR 148
           K    K G    +V AGC+ Q   E + +  P +++ +G  ++  + + ++++  +  ++
Sbjct: 70  K----KTGKCERLVAAGCLTQQYKEALAKEIPEIDIFIGTDSWRNILKAVQKSYEKENEK 125

Query: 149 VVD---TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           + +   T  + E+   R  +    Y       +++ I EGC+K CTFC +P+ RG   SR
Sbjct: 126 IYEFNCTPCASEELIPR-KLTTPSY------MSYIKISEGCNKGCTFCYIPFVRGPMRSR 178

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           ++S ++ E R L   GV E  L+ Q+++ +     DG       LL  L +I  +  +R 
Sbjct: 179 TISSILSEVRNLAKQGVREFNLIAQDLSCYGQDLRDGTSLIL--LLKQLVKIPEVKWIRL 236

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
              +P + +D L+        +  Y+ +P+Q  SD +LK MNR+ T+    +++++IR+ 
Sbjct: 237 FYLYPTNFTDELLDLISKERKICKYIDIPLQHISDNVLKRMNRKDTSESILKLLNKIRNN 296

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P I I +  +VGFPGET+ DF    + + KI +    +FK+SP+ GT  + M  Q+ E+
Sbjct: 297 IPYITIRTTLMVGFPGETESDFEDLCEFIKKIKFDNMGAFKFSPQEGTAAALMQNQISED 356

Query: 386 VKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR------SPWL- 435
           VK +R   L+ +Q  + E+    N+  +G+  EVLIE   K+  KL+ +      SP + 
Sbjct: 357 VKEKRYDKLMSIQAGISEEN---NELLIGKEAEVLIEDIIKDGEKLIAKGRTSFQSPDVD 413

Query: 436 -QSVVLNSKNHNIGDIIKVRITD 457
             + + N  +   GD IK +I D
Sbjct: 414 GNTYIYNFGDACPGDFIKTKIID 436


>gi|296121002|ref|YP_003628780.1| MiaB-like tRNA modifying enzyme YliG [Planctomyces limnophilus DSM
           3776]
 gi|296013342|gb|ADG66581.1| MiaB-like tRNA modifying enzyme YliG [Planctomyces limnophilus DSM
           3776]
          Length = 463

 Score =  187 bits (474), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 127/436 (29%), Positives = 223/436 (51%), Gaps = 24/436 (5%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ DS RM      +GY  V + + AD +V+NTC   + A E+  S +  +  L
Sbjct: 20  SLGCPKNLVDSERMLGTLSEEGYSLVPNPEGADFVVINTCGFIDSAREESKSVIREMLQL 79

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
           K+     GG   V+VAGC+ +  G  +L+  P ++ V+G  +   + ++ +R   G R  
Sbjct: 80  KS----HGGTRGVIVAGCLPERMGGALLQEIPEIDHVMGVFSREEIGKVADRMVGGAREQ 135

Query: 151 DTDY------SVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
              +      +++D+  RL +    +       A+L I EGCD+ CTFC +P  RG  I+
Sbjct: 136 REVFRPAPIRAMDDRL-RLRVTPKHF-------AYLKISEGCDRTCTFCAIPKMRGKHIT 187

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           + +  V+ EAR+L  +GV E+ L+ Q+   + G  L G +   ++LL  + +++G+  +R
Sbjct: 188 KPIEMVIQEARELAADGVKELILVAQDTTYY-GLDLYG-RVRLAELLREVEKVEGIQWIR 245

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
               +P   +D LI        ++PYL LP+Q  +D +L+ M RR       +++D+++ 
Sbjct: 246 LMYLYPIHFTDELIDTIAGSGKILPYLDLPLQHINDTMLRRMQRRTNRAATVELLDKLQD 305

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
              ++ I + FI GFPGETD  F      VD+  +A+  +F YS   GTP   + + + E
Sbjct: 306 RIANLTIRTTFITGFPGETDAQFEELCQFVDEGRFARLGAFTYSYEPGTPAVRLPDHLPE 365

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK---GKLVGRSPWLQS-VVL 440
           +VKA R   L +  +    +F D  +G  ++ ++++   E+   G+    +P + + V +
Sbjct: 366 DVKAARRDRLMEIQQPHAFAFADQWIGYELDAVLDRKIDEQTWLGRCFFDAPDIDANVFV 425

Query: 441 NSKNHNIGDIIKVRIT 456
             +N   G +I V IT
Sbjct: 426 TGENLRAGQMIPVEIT 441


>gi|149372096|ref|ZP_01891366.1| possible 2-methylthioadenine synthetase [unidentified eubacterium
           SCB49]
 gi|149354863|gb|EDM43425.1| possible 2-methylthioadenine synthetase [unidentified eubacterium
           SCB49]
          Length = 449

 Score =  186 bits (473), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 128/418 (30%), Positives = 205/418 (49%), Gaps = 35/418 (8%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           I  ++    + GC++N  ++  +   F  +GYERV+  ++AD+ V+NTC + E A ++  
Sbjct: 2   IAQKKVAFYTLGCKLNFSETSTIARDFTKEGYERVDFKEEADIYVVNTCSVTENADKRFK 61

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLP---- 137
           S + + +       K   D  V   GC AQ + EE L     V++V+G    ++LP    
Sbjct: 62  SIVKQAQ-------KVNPDAFVAAIGCYAQLKPEE-LADVDGVDLVLGATEKFKLPFYIS 113

Query: 138 ELLERARFGK--------RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKF 189
           ELL      K         + D D+ V           G Y+      AFL +Q+GCD  
Sbjct: 114 ELLASPDRSKGDAQIHSCEIEDADFYV-----------GSYSIGDRTRAFLKVQDGCDYK 162

Query: 190 CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK---CT 246
           CT+C +P  RGI  S +L  V+  A ++    + EI L G N+  + GKG  G K    T
Sbjct: 163 CTYCTIPLARGISRSDALENVLKNASEIAAQNIKEIVLTGVNIGDY-GKGEFGNKKHEHT 221

Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306
           F +L  +L E+ G+ RLR ++  P  + +  I         +P+ H+P+QSGS+ +LK M
Sbjct: 222 FFELCQALDEVAGIERLRISSIEPNLLKNETIDFVAQSKTFVPHFHIPLQSGSNTLLKLM 281

Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
            RR+    Y   + +I+ V P+  I  D IVGFPGETD+ F  T + +  +  +    F 
Sbjct: 282 KRRYMRELYVDRVSQIKQVMPNACIGVDVIVGFPGETDELFLETYNFLTTLDISYLHVFT 341

Query: 367 YSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE 424
           YS R  T  + M   V + V+A+R   L+    +++ +F ++ +   + VL E   KE
Sbjct: 342 YSERENTEAATMEGVVPKKVRAKRSKMLRGLSAKKRRAFYESQLNNTLTVLFEGENKE 399


>gi|296103227|ref|YP_003613373.1| hypothetical protein ECL_02885 [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295057686|gb|ADF62424.1| hypothetical protein ECL_02885 [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 441

 Score =  186 bits (473), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 139/462 (30%), Positives = 232/462 (50%), Gaps = 44/462 (9%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P +    S GC  N+ DS R+     ++GY+ V S D+AD++++NTC   + A ++    
Sbjct: 7   PPKIGFVSLGCPKNLVDSERILTELRTEGYDVVPSYDNADMVIVNTCGFIDSAVQESLEA 66

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G         + E G   V+V GC+   E ++I    P V  + GP +Y ++ E +   
Sbjct: 67  IGEA-------LTENGK--VIVTGCLGAKE-DQIREVHPKVLEITGPHSYEQVLEHVHH- 115

Query: 144 RFGKRVVDTDYSVEDKFER-LSIV-DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
                     Y  + K    LS+V + G        A+L I EGC+  CTFC++P  RG 
Sbjct: 116 ----------YVPKPKHNPFLSLVPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGD 165

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYS 253
            +SR + +V+ EA++L D GV E+ ++ Q+ +A+      R    +GE  K +   L   
Sbjct: 166 LVSRPIGEVLAEAKRLADAGVKELLVISQDTSAYGVDVKHRSGFHNGEPVKTSMVGLCEQ 225

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
           L+++    RL Y   +P       + A G +   +PYL +P+Q  S RILK M R  +  
Sbjct: 226 LAKLGIWTRLHYVYPYPHVDDVIPLMAEGKI---LPYLDIPLQHASPRILKLMKRPGSVD 282

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
                I + R + PD+ + S FIVGFPGET++DF+  +D + +    +   FKYSP  G 
Sbjct: 283 RQLARIKQWREICPDLTLRSTFIVGFPGETEEDFQMLLDFLKEARLDRVGCFKYSPVEGA 342

Query: 374 PGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKL 428
             + + +QV E VK E   R + LQ+++  +++      VG+ I V+I++  +E   G+ 
Sbjct: 343 TANELADQVPEEVKEERWNRFMQLQQQISAERLQEK---VGREIMVIIDEVDEEGAIGRS 399

Query: 429 VGRSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468
           +  +P +   V  +   N+  GDII+V++ +     L+G  V
Sbjct: 400 MADAPEIDGAVYLNGETNVKPGDIIRVKVENADEYDLWGSRV 441


>gi|331001874|ref|ZP_08325395.1| MiaB-like tRNA modifying enzyme YliG [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330412197|gb|EGG91591.1| MiaB-like tRNA modifying enzyme YliG [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 440

 Score =  186 bits (473), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 132/452 (29%), Positives = 232/452 (51%), Gaps = 32/452 (7%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N  DS  M  +   +G+E  +  ++A+++++NTC   + A E+  + +     L
Sbjct: 7   SLGCDKNTVDSEMMLGLMNEKGFEYTDIDEEAEVMIINTCGFIQSAKEESINAI-----L 61

Query: 91  KNSRIKEGGDL-LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149
             +R+KE G L  ++V GC+AQ   +EI++  P V+ ++G  ++ ++ E +E    G+  
Sbjct: 62  DAARLKEDGALKALIVTGCLAQRYKDEIIKEIPEVDALLGTSSFDKIVETVEDVLGGE-- 119

Query: 150 VDTDYSVEDKF---ERL-SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                 ++++F   +RL SI +   N   G  A+L I EGC+K CT+C++P  RG   S 
Sbjct: 120 ------IKNEFLDLDRLPSISNKRKNSTGGYYAYLKIAEGCNKNCTYCIIPSLRGNYRSY 173

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            +  ++ +A+ L   G+ E+ L+ Q    + G  L GEK T   LL  L+++ G+  +R 
Sbjct: 174 PMDDLITQAKDLAAQGIKELILVAQETTLY-GVDLYGEK-TLPKLLKELAKVSGIEWIRI 231

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
              +P +++D LI    + + +  YL +P+Q  SD IL+ M RR T  +   II ++R  
Sbjct: 232 LYCYPEEITDELIDVIANEEKVCKYLDIPIQHASDNILRRMARRTTHDDLVSIIGKLRKN 291

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P I + +  I GFPGET+ D    +  + ++ + +   F YS   GT  +    Q+DE 
Sbjct: 292 IPGITLRTTIISGFPGETEKDLETVIKFIKEMKFERLGVFTYSEEEGTVAAGFENQIDEE 351

Query: 386 VKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSV 438
            K    +R++ +Q+++ E  +      VG+  +VLIE    E+   +GR+    P +   
Sbjct: 352 EKEARRDRIMRVQQEVSENNLL---NMVGRTFKVLIEGRLPEENVYIGRTYMDVPGVDGY 408

Query: 439 VLNSKNHNI--GDIIKVRITDVKISTLYGELV 468
           V  + + N   GD   V IT      L G+++
Sbjct: 409 VFVNTDKNFISGDFCDVIITGSSEYDLIGDVL 440


>gi|260589077|ref|ZP_05854990.1| RNA modification enzyme, MiaB family [Blautia hansenii DSM 20583]
 gi|331082507|ref|ZP_08331632.1| MiaB-like tRNA modifying enzyme [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|260540497|gb|EEX21066.1| RNA modification enzyme, MiaB family [Blautia hansenii DSM 20583]
 gi|330400485|gb|EGG80115.1| MiaB-like tRNA modifying enzyme [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 434

 Score =  186 bits (473), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 124/417 (29%), Positives = 227/417 (54%), Gaps = 26/417 (6%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + ++  + + GC++N Y+   M++M    GYE V     AD+ ++NTC +   A  K   
Sbjct: 1   MKKKVALHNLGCKVNAYELEAMQEMLEKAGYEIVPFAPGADVYIINTCTVTNIADRKSRQ 60

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            L + R +         + +V+ AGC  QA+ + +      +++V+G      L  +LE 
Sbjct: 61  MLHKARKM-------NPEAIVIAAGCYVQAQ-KNMENIDDAIDIVLGNNRKQDLLFVLEN 112

Query: 143 ARFG----KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
            + G    K ++  D  VE  +E L +   G + +    A+L +Q+GC++FC++C++PY 
Sbjct: 113 YKKGSGQEKDLISLDKPVE--YEELQLSSTGEHTR----AYLKVQDGCNQFCSYCIIPYV 166

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258
           RG   SR   +V++E  +L  NG  E  L G +++++   G+D E     +L+ ++ EI+
Sbjct: 167 RGRVRSRRKEEVLEEVLRLTKNGYQEFVLTGIHLSSY---GVDCED-NLLELIKAVHEIE 222

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           G+ R+R  +  PR +++   +A G++  + P+ HL +QSG D  L  MNR+++A EY + 
Sbjct: 223 GVKRIRLGSLEPRIITEEFAQALGNMPKICPHFHLSLQSGCDATLMRMNRKYSAEEYLEG 282

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
              +R    + A+++D IVGFP E++++F  +  +++ + + +   FKYS R GT  + M
Sbjct: 283 CRLLRKYFKNPALTTDVIVGFPQESEEEFEQSYKMIESVEFYETHIFKYSRRQGTRAAEM 342

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWL 435
             QVDE VK ER   L +  +E++  + ++ +GQ +E+L E    E  K+ G   W+
Sbjct: 343 EGQVDEAVKTERSHKLIQLGKEKKQKYMESFLGQQVEILFE----ETAKIQGEEYWI 395


>gi|28210972|ref|NP_781916.1| Fe-S oxidoreductase [Clostridium tetani E88]
 gi|75542496|sp|Q895I7|RIMO_CLOTE RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|28203411|gb|AAO35853.1| Fe-S oxidoreductase [Clostridium tetani E88]
          Length = 444

 Score =  186 bits (473), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 127/389 (32%), Positives = 204/389 (52%), Gaps = 28/389 (7%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           ++ V S GC  N  DS  M +    +G    N   +AD+I++NTC   E + ++    + 
Sbjct: 5   KYGVVSLGCDKNRIDSEVMINEIKKEGI-ITNDPKEADVIIVNTCGFIEDSKKESIDTIL 63

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA-R 144
            + N KN+  K     ++VV GC++Q  GEE+    P V+V++G   Y +L + ++++  
Sbjct: 64  EMSNYKNNNCK-----VLVVTGCLSQRYGEELQELLPEVDVMLGVNDYDKLSDAIKKSIE 118

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT-----AFLTIQEGCDKFCTFCVVPYTR 199
            G++ +  +YS         I +GG    R +T     A+L I EGCD FCT+C +P  R
Sbjct: 119 KGEKSLYCNYS------NTVINEGG----RVLTTQKHYAYLRIAEGCDNFCTYCAIPKIR 168

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD--GEKCTFSDLLYSLSEI 257
           G   SR +  +++EA+ L  NGV EI ++ Q+   +   GLD  GEK T   LL  L E+
Sbjct: 169 GKYRSRKIEDIIEEAKFLSQNGVKEIIIVAQDTTRY---GLDIYGEK-TLPSLLKQLEEV 224

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
            G+  +R    +P D+++ LI+       L  Y+ +P+Q  SD +LK M R+       +
Sbjct: 225 DGIEWIRLLYCYPEDITEELIEEFARNKKLCKYVDVPIQHISDSVLKRMGRKGNKQLVTK 284

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
           ++  I+   P+++I +  IVGFPGE ++DF+   D V++  +     FKYS   GTP + 
Sbjct: 285 VLRDIKKRVPEMSIRTSLIVGFPGEMEEDFKELKDFVEEFKFQNLGVFKYSQEEGTPAAT 344

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFN 406
           M +QV E +K  R   L K  R+   S N
Sbjct: 345 MEDQVLEEIKETRREELMKMQRDIVKSIN 373


>gi|222528975|ref|YP_002572857.1| MiaB-like tRNA modifying enzyme YliG [Caldicellulosiruptor bescii
           DSM 6725]
 gi|222455822|gb|ACM60084.1| MiaB-like tRNA modifying enzyme YliG [Caldicellulosiruptor bescii
           DSM 6725]
          Length = 440

 Score =  186 bits (473), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 136/453 (30%), Positives = 232/453 (51%), Gaps = 35/453 (7%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ DS  M       G+E  ++ +DAD+IV+NTC     A ++    +  +   
Sbjct: 8   SLGCNKNLVDSEIMMGACVKAGFEITSNAEDADVIVVNTCGFINDAKQESIDTILDMAEY 67

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
           K+ + K      ++V GC+ Q   +EIL + P ++ ++G +   +LPE+++    GK+ +
Sbjct: 68  KSKKCK-----FLIVTGCLTQRYKDEILEQMPEIDAILGVKEMLKLPEVIKDLYEGKQKI 122

Query: 151 DTDYSVEDKFERLS-----IVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
              +     F  LS     I    Y       A++ I EGC+  C++C +P  RG   SR
Sbjct: 123 KV-FDDTSSFVYLSSMPRVIATPSY------YAYIKIAEGCNNRCSYCSIPLIRGKYTSR 175

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            +  +V EA++L + G  EI L  Q+   + G  L G+K   + LL  L +I+ +  +R+
Sbjct: 176 PIEDIVKEAKELAEKGYQEIVLTAQDTTKY-GLDLYGKKMLHA-LLEELEKIEKIKWIRF 233

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
             S+P D+ + LI+       ++ Y  +P+Q  +DRILK MNR+ T    +++I++IR  
Sbjct: 234 LYSYPEDVDESLIEVVKSSSKIVNYFDIPIQHINDRILKLMNRKTTKEGIKRLIEKIRRS 293

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
             ++ I +  +VGFP ETD++F      +    + +  +F YS   GT  S  L QVD+ 
Sbjct: 294 FDEVIIRTTVLVGFPTETDEEFEELCSFLKWAEFDRLGAFMYSQEEGTLASQ-LPQVDDE 352

Query: 386 VKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL-VGRSPWL------ 435
           V+    E++L +Q+K+ ++Q   N   VG+  EV+IE   K+K    +GRS +       
Sbjct: 353 VRQRRYEKVLNIQRKISKRQ---NKKRVGREYEVVIE--AKDKNNFYIGRSQFEAPEVDG 407

Query: 436 QSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           + +V + K    G  +KV+I D     L GE++
Sbjct: 408 KVLVFSQKKLTAGKFVKVKILDAFEYDLVGEII 440


>gi|167767374|ref|ZP_02439427.1| hypothetical protein CLOSS21_01893 [Clostridium sp. SS2/1]
 gi|167711349|gb|EDS21928.1| hypothetical protein CLOSS21_01893 [Clostridium sp. SS2/1]
          Length = 440

 Score =  186 bits (473), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 128/446 (28%), Positives = 228/446 (51%), Gaps = 33/446 (7%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +R  + + GC++N Y++  M  M    G   V+  + AD+ ++NTC +   A  K    L
Sbjct: 6   KRAAIVTLGCKVNQYETDAMYGMLKEAGVMMVDPKEAADIYIVNTCSVTNMAERKSRQML 65

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R +       K+  D++VV  GC AQ  G+E L +   +++++G      L  +LE   
Sbjct: 66  HRAK-------KKNPDVVVVAVGCYAQV-GKEELSKDTNIDLIIGNNKKKDLIHILEE-H 116

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNR----------KRGVTAFLTIQEGCDKFCTFCV 194
            G++        E   E + ++D  +++          K    A++ +Q+GC++FC++C+
Sbjct: 117 MGEK--------ESAAESIEVIDIAHDQEYESLHVEQLKEHTRAYIKVQDGCNQFCSYCI 168

Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL 254
           +PY RG   SR + +V++E   L  +G  E  + G +V ++   G D    T  DLL  +
Sbjct: 169 IPYARGRVRSRKMEEVLEEITNLTKHGCQEFVITGIHVTSY---GKDLGDVTLIDLLEEI 225

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
           ++I  + R+R  +  P  ++   +     ++   P+ HL +QSG D +LK MNR++T  +
Sbjct: 226 AKIPEVKRIRLGSLEPGFITKDTLDRLSKMESFCPHFHLSLQSGCDSVLKRMNRKYTTQD 285

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
            R+    IR      A+++D IVGFPGET+++F  T   +++I   +   FKYS R GT 
Sbjct: 286 IREKCKAIREHFQYPALTTDIIVGFPGETEEEFEETRKFLEEIDLYEMHVFKYSIRKGTK 345

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK--HGKEKGKLVGRS 432
            ++M  Q+++ +KA+R   L +  ++ Q  F    +G + EVLIE+  HGK+     G +
Sbjct: 346 AADMKPQINDQIKAKRSNVLLEMSKQHQKEFETKQLGMVKEVLIEEKMHGKDH-YYTGHT 404

Query: 433 PWLQSVVLNSKNHNIGDIIKVRITDV 458
                V L S+      I+KV++  +
Sbjct: 405 KEYIKVALYSEEPLENKIVKVKLRQI 430


>gi|253701179|ref|YP_003022368.1| MiaB-like tRNA modifying enzyme [Geobacter sp. M21]
 gi|251776029|gb|ACT18610.1| MiaB-like tRNA modifying enzyme [Geobacter sp. M21]
          Length = 429

 Score =  186 bits (473), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 124/399 (31%), Positives = 195/399 (48%), Gaps = 18/399 (4%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           + + GC++N ++S  M       GY  V     AD+ V+N+C +  K   +    + R  
Sbjct: 7   ITTLGCKINQFESAAMTQALEQNGYSMVPFSAKADIYVVNSCTVTAKTDAESRRLIRRAT 66

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
            L         +  VVV GC AQ  GEE+L+ +  VN+++G      +   LE      R
Sbjct: 67  RLNP-------EARVVVTGCYAQMNGEELLKLAG-VNLILGNSEKKDIVGFLEGLDDQPR 118

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
            V +D S+E   E   +     + +    AFL +Q GCD  C +C+VP+ RG   S ++ 
Sbjct: 119 AVVSDISLEKTGETAPLETFAEHTR----AFLQVQNGCDARCAYCIVPFARGASRSVAVQ 174

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR-LRYTT 267
           + +D        G  EI L G ++ A+   GLD    T    L   ++ +G VR LR  +
Sbjct: 175 EALDGMAAFAAQGFQEIVLTGIHLGAY---GLDLAPPTDLLGLMRKAQDQGAVRRLRIGS 231

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
             P ++S  LI   G   +  P+LHLP+QSGSD +L  MNR +    + +++  + S  P
Sbjct: 232 VEPTEVSRQLIDFMGTSTIACPHLHLPLQSGSDSVLSRMNRGYDTALFAEVVHSLVSAMP 291

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
           ++ I SD I GFPGE+D +F  T   +D +  A    F +S R GTP + M  QV+  V 
Sbjct: 292 EVCIGSDVIAGFPGESDREFDETYRFIDSLPLAYLHVFPFSQRPGTPAATMTPQVNPKVI 351

Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG 426
            ER   L+     ++  +    VG+ ++VL+++   EKG
Sbjct: 352 KERAEALRVLSERKKSDYAAGFVGRELQVLVQR--GEKG 388


>gi|24112201|ref|NP_706711.1| hypothetical protein SF0785 [Shigella flexneri 2a str. 301]
 gi|81723615|sp|Q83LT1|RIMO_SHIFL RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|24051044|gb|AAN42418.1| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301]
 gi|332760529|gb|EGJ90818.1| RNA modification enzyme, MiaB family protein [Shigella flexneri
           2747-71]
 gi|332768001|gb|EGJ98187.1| SAM-dependent methylase [Shigella flexneri 2930-71]
 gi|333006987|gb|EGK26482.1| RNA modification enzyme, MiaB family protein [Shigella flexneri
           K-218]
          Length = 441

 Score =  186 bits (473), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 142/462 (30%), Positives = 234/462 (50%), Gaps = 45/462 (9%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  FV S GC  N+ DS R+     ++GY+ V S DDA+++++NTC   + A ++    
Sbjct: 8   PKIGFV-SLGCPKNLVDSERILTELRTEGYDVVPSYDDANMVIVNTCGFIDSAVQESLEA 66

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G   N       E G   V+V GC+   E ++I    P V  + GP +Y ++ E +   
Sbjct: 67  IGEALN-------ENGK--VIVTGCLGAKE-DQIREVHPKVLEITGPHSYEQVLEHVHH- 115

Query: 144 RFGKRVVDTDYSVEDKFER-LSIV-DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
                     Y  + K    LS+V + G        A+L I EGC+  CTFC++P  RG 
Sbjct: 116 ----------YVPKPKHNPFLSLVPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGD 165

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYS 253
            +SR + +V+ EA++L+D GV EI ++ Q+ +A+      R    +GE  K +   L   
Sbjct: 166 LVSRPIGEVLSEAKRLVDAGVKEILVISQDTSAYGVDVKHRTGFHNGEPVKTSMVSLCEQ 225

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
           LS++    RL Y   +P       + A G +   +PYL +P+Q  S RILK M R  +  
Sbjct: 226 LSKLGIWTRLHYVYPYPHVDDVIPLMAEGKI---LPYLDIPLQHASPRILKLMKRPGSVD 282

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
                I + R + P++ + S FIVGFPGET++DF+  +D + +    +   FKYSP  G 
Sbjct: 283 RQLARIKQWREICPELTLRSTFIVGFPGETEEDFQMLLDFLKEARLDRVGCFKYSPVEGA 342

Query: 374 PGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKL 428
             + + +QV E VK E   R + LQ+++  +++      VG+ I V+I++  +E   G+ 
Sbjct: 343 DANALPDQVPEEVKEERWNRFMQLQQQISAERLQEK---VGREILVIIDEVDEEGAIGRS 399

Query: 429 VGRSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468
           +  +P +   V  +   N+  GDI++V++       L+G  V
Sbjct: 400 MADAPEIDGAVYLNGETNVKPGDILRVKVEHADEYDLWGSRV 441


>gi|227112051|ref|ZP_03825707.1| hypothetical protein PcarbP_03748 [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 437

 Score =  186 bits (473), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 138/463 (29%), Positives = 228/463 (49%), Gaps = 47/463 (10%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  FV S GC  N+ DS R+     ++GY+ V   DDA+L+++NTC   + A ++    
Sbjct: 4   PRIGFV-SLGCPKNLVDSERILTELRTEGYQVVPRYDDAELVIVNTCGFIDSAVQESLEA 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G   N       E G   V+V GC+   E + I    P V  + GP +Y ++   + + 
Sbjct: 63  IGEALN-------ENGK--VIVTGCLGAKENQ-IREVHPKVLEITGPHSYEQVLSHVHQY 112

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
                         + F  L + + G        A+L I EGC+  CTFC++P  RG   
Sbjct: 113 --------VPKPTHNPFTSL-VPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGDLD 163

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLY 252
           SR +  V+DEA++L+D GV E+ ++ Q+ +A           W G+ +   K +   L  
Sbjct: 164 SRPIGSVLDEAKRLVDAGVKELLVISQDTSAYGADVKQRTGFWNGQPV---KTSMVSLCE 220

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
            L+ +   VRL Y   +P       + A G +   +PYL +P+Q  S +ILK M R    
Sbjct: 221 QLASLGVWVRLHYVYPYPHVDDVIPLMAEGKI---LPYLDIPLQHASPKILKLMKRPGAV 277

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
               + I R R + PD+ + S FIVGFPGET++DF+  +D + +    +   FK+SP  G
Sbjct: 278 ERTLERIKRWREICPDLTLRSTFIVGFPGETEEDFQMLLDFLTEAKLDRVGCFKFSPVEG 337

Query: 373 TPGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GK 427
              + + +QV E +K E   R + LQ+ +  Q++      +G+ + VLI++  +E   G+
Sbjct: 338 ASANALPDQVPEEIKEERFHRFMQLQQAISTQRLQDK---IGREVLVLIDEIDEEGAIGR 394

Query: 428 LVGRSPWLQ-SVVLNSKNH-NIGDIIKVRITDVKISTLYGELV 468
            +  +P +  +V LN +    +GDI+KV++       L+G  V
Sbjct: 395 SMADAPEIDGAVYLNGETGVKVGDIVKVKVEHADEYDLWGSRV 437


>gi|187730809|ref|YP_001880977.1| ribosomal protein S12 methylthiotransferase [Shigella boydii CDC
           3083-94]
 gi|238066604|sp|B2TV93|RIMO_SHIB3 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|187427801|gb|ACD07075.1| MiaB-like tRNA modifying enzyme YliG [Shigella boydii CDC 3083-94]
          Length = 441

 Score =  186 bits (473), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 142/462 (30%), Positives = 234/462 (50%), Gaps = 45/462 (9%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  FV S GC  N+ DS R+     ++GY+ V S DDAD++++NTC   + A ++    
Sbjct: 8   PKIGFV-SLGCPKNLVDSERILTELRTEGYDVVPSYDDADMVIVNTCGFIDSAVQESLEA 66

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G   N       E G   V+V GC+   E ++I    P V  + GP +Y ++ E +   
Sbjct: 67  IGEALN-------ENGK--VIVTGCLGAKE-DQIREVHPKVLEITGPHSYEQVLEHVHH- 115

Query: 144 RFGKRVVDTDYSVEDKFER-LSIV-DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
                     Y  + K    LS+V + G        A+L I EGC+  CTFC++P  RG 
Sbjct: 116 ----------YVPKPKHNPFLSLVPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGD 165

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYS 253
            +SR + +V+ EA++L+D GV EI ++ Q+ +A+      R    +G+  K +   L   
Sbjct: 166 LVSRPIGEVLSEAKRLVDAGVKEILVISQDTSAYGVDVKHRTGFHNGKPVKTSMVSLCEQ 225

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
           LS++    RL Y   +P       + A G +   +PYL +P+Q  S RILK M R  +  
Sbjct: 226 LSKLGIWTRLHYVYPYPHVDDVIPLMAEGKI---LPYLDIPLQHASPRILKLMKRPGSVD 282

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
                I + R + P++ + S FIVGFPGET++DF+  +D + +    +   FKYSP  G 
Sbjct: 283 RQLARIKQWREICPELTLRSTFIVGFPGETEEDFQMLLDFLKEARLDRVGCFKYSPVEGA 342

Query: 374 PGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKL 428
             + + +QV E VK E   R + LQ+++  +++      VG+ I V+I++  +E   G+ 
Sbjct: 343 DANALPDQVPEEVKEERWNRFMQLQQQISAERLQEK---VGREILVIIDEVDEEGAIGRS 399

Query: 429 VGRSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468
           +  +P +   V  +   N+  GDI++V++       L+G  V
Sbjct: 400 MADAPEIDGAVYLNGETNVKPGDILRVKVEHADEYDLWGSRV 441


>gi|312178702|gb|ADQ39284.1| hypothetical protein nle15_1 [uncultured bacterium]
          Length = 444

 Score =  186 bits (473), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 125/427 (29%), Positives = 213/427 (49%), Gaps = 39/427 (9%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N  ++  +   F  +G++RV   + AD+ V+NTC + + A +       R + +
Sbjct: 11  TLGCKLNFSETSTIARSFKDEGFQRVEFSETADIYVINTCSVTDNADK-------RFKTI 63

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE---RARFGK 147
                K   +  V+  GC AQ + +E L     V++V+G    +++   L    +  FG+
Sbjct: 64  VKQAQKVNENAFVIAVGCYAQLKPKE-LAAVDGVDLVLGATEKFKITNYLNDLTKNDFGE 122

Query: 148 ----RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
                + + D+ V           G Y+      AFL +Q+GCD  CT+C +P  RGI  
Sbjct: 123 IHSCEIQEADFYV-----------GSYSFGDRTRAFLKVQDGCDYKCTYCTIPLARGISR 171

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK---CTFSDLLYSLSEIKGL 260
           S +L  V+D A+K+ +  + EI L G N+  + GKG  G K    TF DL+ +L  ++G+
Sbjct: 172 SDTLQNVLDNAKKISEKNIREIVLTGVNIGDY-GKGEFGNKKHEHTFLDLVKALDGVEGI 230

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            RLR ++  P  + +  I      +  +P+ H+P+QSGS+ +LK+M RR+    Y   + 
Sbjct: 231 ERLRISSIEPNLLKNETIDFVAQSNAFVPHFHIPLQSGSNEVLKNMRRRYMKELYVDRVA 290

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           RI+   PD  I  D IVGFPGETD+ F  + + ++ +  +    F YS R  T  + M  
Sbjct: 291 RIKETMPDACIGVDVIVGFPGETDEHFLESYNFLNDLDVSYLHVFTYSERENTVAAEMEG 350

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG--------RS 432
            V   V+ +R   L+    +++ +F ++ +G+   VL E   KE G + G        ++
Sbjct: 351 VVPLKVRKKRSKMLRGLSAKKRRAFYESQLGKTKTVLFEGENKE-GYIHGFTENYVKVKT 409

Query: 433 PWLQSVV 439
           PW   +V
Sbjct: 410 PWNPGLV 416


>gi|223985672|ref|ZP_03635720.1| hypothetical protein HOLDEFILI_03026 [Holdemania filiformis DSM
           12042]
 gi|223962363|gb|EEF66827.1| hypothetical protein HOLDEFILI_03026 [Holdemania filiformis DSM
           12042]
          Length = 439

 Score =  186 bits (473), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 115/394 (29%), Positives = 206/394 (52%), Gaps = 20/394 (5%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           + + GC++N Y+S         +GY+ V+  + AD+ ++ TC +   AA K    + + R
Sbjct: 12  ISTLGCKVNAYESESTAQALRQRGYQTVDFKEKADVYIIFTCAVTNTAASKSRQKIHQAR 71

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
                  ++  D LV   GC  Q + +++  +  I +++VG     +LP+L++ A   +R
Sbjct: 72  -------RQNPDALVCAVGCYVQIQADQMAEQEKI-DILVGSSGKDKLPQLIDEALRQRR 123

Query: 149 ---VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
              V   D     +FE L + +  +  +    A+L +Q+GC++FC +C++PY RG E S 
Sbjct: 124 EPIVELHDVRTSAEFEMLPLDEFEHQTR----AYLKVQDGCNQFCAYCIIPYARGRERSL 179

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            L + + EAR+L      EI L G +   + GK  D   C   DL+  + EI+ L R+R 
Sbjct: 180 PLDEALKEARRLAQKHK-EIVLAGIHTGRY-GKDRDTSLC---DLIRGMCEIEPLERIRI 234

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
           ++    +++D L+        +  +LH+P+Q+G D  LK M R +T  ++   ++ IR+ 
Sbjct: 235 SSIEITEITDELLTLMETQPKIARHLHIPLQAGCDATLKRMGRPYTTAQFMARVEEIRTR 294

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
              I+IS+D IVGFP E++ +F ATM  + +I ++    F +SP+ GTP   M  Q+   
Sbjct: 295 IDGISISTDLIVGFPQESEAEFAATMAFLKQIQFSFIHVFPFSPKTGTPAQRMSGQISSE 354

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419
           VK +R   + +  R    +   + +G+ ++V+IE
Sbjct: 355 VKKQRARQVGEFSRNSYYAVKSSWIGKDVDVIIE 388


>gi|253681883|ref|ZP_04862680.1| conserved hypothetical protein [Clostridium botulinum D str. 1873]
 gi|253561595|gb|EES91047.1| conserved hypothetical protein [Clostridium botulinum D str. 1873]
          Length = 444

 Score =  186 bits (472), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 131/439 (29%), Positives = 231/439 (52%), Gaps = 30/439 (6%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N  DS  +     ++  E VN+ ++AD+I++NTC   E + ++    +  +   
Sbjct: 10  SLGCDKNRIDSELLLGKL-NENNEIVNNPNEADIIIVNTCGFIETSKQESIDTIIEMAQY 68

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
           K+   K     +++  GC+ Q   +E+ +  P +++++G   Y  + + ++     K  +
Sbjct: 69  KDKNCK-----MIIATGCLTQRYSKELQQLIPEIDIMLGVNDYANIQDYIDEFFENKNKI 123

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVT-----AFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                 + K+  +SI +G    KR +T     A++ I EGCD FCT+C++P  RG   SR
Sbjct: 124 -----CKCKYSDVSINEG----KRILTTDKHVAYIRISEGCDNFCTYCIIPKIRGKYRSR 174

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           S+  +V EA++L   GV E+ L+GQ+  A  G+ +  E     DL+ ++SEI+ +  +R 
Sbjct: 175 SIDSIVKEAKELSAMGVKELILVGQDT-AIYGRDIYSEN-KLPDLIRAISEIESIEWIRV 232

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
             ++P +++D LI+   + D +  YL +P+Q  S+ +LK MNRR T     + I ++R+ 
Sbjct: 233 LYTYPEEITDELIEEIKNNDKVCNYLDIPIQHVSNTVLKRMNRRSTKEIISENIRKMRNE 292

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
             D+ + +  IVGFPGET+D+F    + + +I +     FKYS    T  + M +Q+ E 
Sbjct: 293 IKDLCLRTSIIVGFPGETEDEFNELKEFIKEIKFDNLGVFKYSQEEDTAAARMKDQISEE 352

Query: 386 VKAERLLCLQKKLREQQVS--FNDACVGQIIEVLIEKHGKEK--GKLVGRSPWLQSVVL- 440
           +K  RL  L   + +QQVS   N   + ++ +VLIE H  E   G+    +P +   +  
Sbjct: 353 IKESRLEELM--IIQQQVSKEKNKNKIRKVYKVLIEGHNDEYWIGRNYQMTPEIDGAIFF 410

Query: 441 -NSKNHNIGDIIKVRITDV 458
              K  N+G+ I ++ITD 
Sbjct: 411 KCDKILNVGEFIYIKITDA 429


>gi|257465559|ref|ZP_05629930.1| MiaB-like tRNA modifying enzyme YliG [Actinobacillus minor 202]
 gi|257451219|gb|EEV25262.1| MiaB-like tRNA modifying enzyme YliG [Actinobacillus minor 202]
          Length = 444

 Score =  186 bits (472), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 136/456 (29%), Positives = 222/456 (48%), Gaps = 46/456 (10%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ DS R+     S GY  + S + ADL+++NTC   + A ++    +G     
Sbjct: 12  SLGCPKNLVDSERILTELRSDGYNIIPSYEGADLVIVNTCGFIDSAVQESLESIGEALEA 71

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
                       V+V GC+   E + I    P V  + GP +Y  +          K V 
Sbjct: 72  NGK---------VIVTGCLGAKENQ-IREVHPKVLEITGPHSYEAV-----MKHVHKYVP 116

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
             +Y   + +  L +   G        A+L I EGCD  CTFC++P  RG   SRS+ QV
Sbjct: 117 KPEY---NPYVNL-VPKQGVKLTPKHYAYLKISEGCDHRCTFCIIPSMRGDLDSRSIVQV 172

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWR--GKGLDGEKCTFSD----------LLYSLSEIK 258
           +DEA++L+D+GV E+ ++ Q+ +A+    K  +G K  F +          L   L  + 
Sbjct: 173 LDEAKRLVDSGVKELLIVSQDTSAYALDKKKEEGTKTVFWNGMPIKNNLITLCEQLGSMG 232

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
             VRL Y   +P       + A G +   +PYL +P+Q  S +ILK+M R  +     + 
Sbjct: 233 VWVRLHYVYPYPHVDDLIPLMAQGKI---LPYLDIPLQHASPKILKAMKRPGSIERTLER 289

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           I + R + P++ + S FIVGFPGET++DF+  +D + +    +   FK+SP  G   + M
Sbjct: 290 IKKWREICPELTLRSTFIVGFPGETEEDFQMLLDFLKEAQLDRVGCFKFSPVEGAEATEM 349

Query: 379 LEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSP 433
            +QV E+VK E   R + LQ+++  Q++      +G+ + V++++   E   G+ +  +P
Sbjct: 350 ADQVPEDVKEERFHRFMQLQQEISAQRLQQK---IGKTLAVIVDEIDDEGIIGRSMADAP 406

Query: 434 WLQSVV----LNSKNHNIGDIIKVRITDVKISTLYG 465
            +  VV    L+     +G II V IT+     L+G
Sbjct: 407 EIDGVVYVDNLSEMEVTVGQIISVTITNADEYDLWG 442


>gi|298293310|ref|YP_003695249.1| MiaB-like tRNA modifying enzyme [Starkeya novella DSM 506]
 gi|296929821|gb|ADH90630.1| MiaB-like tRNA modifying enzyme [Starkeya novella DSM 506]
          Length = 428

 Score =  186 bits (472), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 130/405 (32%), Positives = 203/405 (50%), Gaps = 33/405 (8%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V ++GC++N  DS     M  + G ER         +++NTC +  +A ++       IR
Sbjct: 9   VVTFGCRLNALDSATARAMAGAAGLERA--------VIVNTCAVTGEAVKQARQA---IR 57

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVV-----VGPQTYYRLPELLERA 143
            LK    +E  +  +VV GC AQ E     R + +  V+     + P+++      L+  
Sbjct: 58  RLK----REDPERRIVVTGCAAQTEPAGFARMAEVDGVLGNEEKLSPESWAATRRALD-- 111

Query: 144 RFG-----KRVVDTDYSVEDKFERLSIVDGGYNRKRGVT-AFLTIQEGCDKFCTFCVVPY 197
            FG     K +V    +V +    L  +DG  +   G T AF+ +Q GCD  CTFC++PY
Sbjct: 112 -FGIDNEEKILVGDIMAVRETAPHL--LDGPADTIDGHTRAFVQVQNGCDHRCTFCIIPY 168

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257
            RG   S  +  VV+  R L++ G  E+ L G ++ +W G  L G     + +   L  +
Sbjct: 169 GRGNSRSVPMGAVVERVRALVEQGFGEVVLTGVDLTSW-GADLPGTPRLGALVRALLKHV 227

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
             L RLR ++    +    L++A  + + LMP+LHL +Q+G+D ILK M RRH   +  +
Sbjct: 228 PELRRLRLSSIDSIEADGDLLRAFAEEERLMPHLHLSLQAGNDLILKRMKRRHLRRDAIR 287

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
               +R +RPD+ + +D I GFP ET+  FRA++DLVD  G      F +SPR GTP + 
Sbjct: 288 FCAEVRRLRPDMVLGADLIAGFPTETEAQFRASLDLVDACGLTHLHVFPFSPRPGTPAAR 347

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422
           M +   E +K +R   L++K  E  +      VG   EVL E+ G
Sbjct: 348 MPQVAGEVIK-DRARRLREKGAEALLRHLAGEVGMSREVLAERGG 391


>gi|225849025|ref|YP_002729189.1| hypothetical protein SULAZ_1219 [Sulfurihydrogenibium azorense
           Az-Fu1]
 gi|225643875|gb|ACN98925.1| conserved hypothetical protein [Sulfurihydrogenibium azorense
           Az-Fu1]
          Length = 445

 Score =  186 bits (472), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 121/431 (28%), Positives = 217/431 (50%), Gaps = 21/431 (4%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC+MN +++  +ED F  +GY+  +    AD+ ++NTC +   A       L + +  
Sbjct: 14  TLGCRMNQFETSALEDQFSLKGYDITDFESVADIYIVNTCTVTNDADRTSRKTLRQAK-- 71

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER---ARFGK 147
                +   + +VV  GC AQ   +E L + P +++V+G      + E++E     +F  
Sbjct: 72  -----RRNPNAIVVATGCYAQVSPQE-LAKIPEIDLVIGNSHKTAVLEIVENYINEKFEN 125

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
           +V   +   E+ F+    +   Y   R +   L +QEGC+ FC+FC++P+ RG   S  +
Sbjct: 126 KVFIDNIFRENDFKTF-FISTFYEGSRPI---LKVQEGCNSFCSFCIIPFARGKVRSAKI 181

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
             +V++ + L+D G  EI L G  ++ +   G D ++    DLL  L  ++GL R+R ++
Sbjct: 182 QDIVNQVKFLVDKGYKEIVLTGTQLSQF---GYDHKEGYLLDLLKQLVNVEGLYRIRLSS 238

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
               ++ D LI      + + P+ HL +QS  DR+LK M R ++  +Y + +++I   RP
Sbjct: 239 MGINELDDYLIDFLTTQEKIAPHFHLSIQSADDRVLKDMKRNYSVKQYVEKVEKILKNRP 298

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
           D AI +D I GFP E +  F+ T+  V++I +A    F YS R  T      ++V   VK
Sbjct: 299 DTAIGTDIITGFPTEDETAFKNTVKNVEEIPFAYIHVFTYSMRDNTSAVKFGDRVSPQVK 358

Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNI 447
            ER   L++    + + F    +G+ +E LI    KE  K+     ++ + +    +  +
Sbjct: 359 KERTKILREIGERKSIDFRKKFLGKDMEFLIITE-KEDYKIGLTGNYIHAKI--KTDQPL 415

Query: 448 GDIIKVRITDV 458
             I+K ++T V
Sbjct: 416 NSIVKSKLTKV 426


>gi|313680806|ref|YP_004058545.1| SSU ribosomal protein s12p methylthiotransferase [Oceanithermus
           profundus DSM 14977]
 gi|313153521|gb|ADR37372.1| SSU ribosomal protein S12P methylthiotransferase [Oceanithermus
           profundus DSM 14977]
          Length = 443

 Score =  186 bits (472), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 137/455 (30%), Positives = 214/455 (47%), Gaps = 44/455 (9%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC   + DS ++     + GY       +AD++V+NTC     + E+    +G     
Sbjct: 9   SLGCPKALVDSEQILSRLKAAGYGFAADYAEADVVVVNTCGFITPSIEESLEAIGEAL-- 66

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
                  G +  VVV GC+  A  E I ++ P V  V GP          E  R    V 
Sbjct: 67  -------GANGKVVVTGCLG-ARPEVIRKKYPQVIDVSGPA---------ETERVLAAVA 109

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
                  D F  L +V           A+L I EGCD  C+FC++P  RG  +SR  ++V
Sbjct: 110 QVAPPERDPF--LDLVPPQVKLTPRHYAYLKIAEGCDHKCSFCIIPQLRGGLVSRDAAEV 167

Query: 211 VDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYSLSEIKG 259
           + EA +L   G  E+ ++ Q+ +A           W G+ +   +   +DL+  LS +  
Sbjct: 168 LAEAARLAAGGTRELLVIAQDSSAYGVDLGHRESDWAGRPV---RAHLTDLVRELSGLVP 224

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
            VRL Y   +P       + A G L   +PYL +P+Q  S R+L++M R   A  + + I
Sbjct: 225 WVRLHYVYPYPHVRELLPLMAEGRL---LPYLDVPLQHASPRVLRAMRRPGGAESHLKTI 281

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
              R+V P++AI S FIVGFPGET+DDF   ++ + +    +   F YSP  G   + + 
Sbjct: 282 REWRAVVPELAIRSSFIVGFPGETEDDFELLLEFLAEARLERVGVFTYSPVAGAAANELP 341

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWL 435
             V E VK ER   + +  +   +  N A VG++++V++++   E G  VGR    SP +
Sbjct: 342 GAVPEEVKQERRARVMELAQRLSLEKNRAKVGRVLDVILDEPADEPGVFVGRSYADSPGI 401

Query: 436 QSVVLNSKNHN--IGDIIKVRITDVKISTLYGELV 468
              V  + +    +G+I+ VRIT   +  L GE+V
Sbjct: 402 DGTVRVTSDGTVRVGEIVPVRITAADVYDLEGEVV 436


>gi|220936126|ref|YP_002515025.1| 2-alkenal reductase [Thioalkalivibrio sp. HL-EbGR7]
 gi|219997436|gb|ACL74038.1| 2-alkenal reductase [Thioalkalivibrio sp. HL-EbGR7]
          Length = 446

 Score =  186 bits (472), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 144/460 (31%), Positives = 222/460 (48%), Gaps = 58/460 (12%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC   + DS R+     ++GY    S +DADL+V+NTC   + A E+    +G     
Sbjct: 18  SLGCPKALVDSERILTQLRAEGYGISPSYEDADLVVVNTCGFIDAAVEESLEAIGEALT- 76

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
           +N R        V+V GC+  AE +++    P V  V GP  Y  +   + R        
Sbjct: 77  ENGR--------VIVTGCLG-AEADKVRDAHPGVLAVTGPHAYEAVMAEVHRHLPPSHA- 126

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
                    FE L +  GG        A+L I EGC+  C+FC++P  RG  +SR + +V
Sbjct: 127 --------PFESL-VPLGGVKLTPRHYAYLKISEGCNHRCSFCIIPQFRGDLVSRPVGEV 177

Query: 211 VDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYSLSEIKG 259
           + EA  L+  GV E+ ++ Q+ +A           W+G+ L   +     L  +L  +  
Sbjct: 178 MQEAENLVAAGVKELLIVSQDTSAYGVDVKYRTGFWQGRPL---RTHIQQLAEALGSLGV 234

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
            VRL Y   +P       + A G L   +PYL +P+Q GS R+LK+M RR  A E  + +
Sbjct: 235 WVRLHYVYPYPHVDQLIPLMAEGKL---LPYLDVPLQHGSPRVLKAM-RRPAASE--KAL 288

Query: 320 DRIRSVR---PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
           +RIR+ R   PDI + S FIVGFPGET+D+F   +  +++    +   F YSP  G   +
Sbjct: 289 ERIRAWREICPDITLRSTFIVGFPGETEDEFEELLAFIEEAQLDRVGCFAYSPVEGAAAN 348

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFN----DACVGQIIEVLIEKHGKEKGKLVGRS 432
            + + V E VKAERL    ++  E Q + +     A VG+ + VL++    E G ++ RS
Sbjct: 349 ALPDPVPEEVKAERL----ERFMEVQAAISADRLQARVGRTLTVLVDGE-DEDGAIIARS 403

Query: 433 ----PWLQSVVL--NSKNHNIGDIIKVRITDVKISTLYGE 466
               P +  VV+  + +    G I+ V IT      L+G+
Sbjct: 404 SSDAPEIDGVVVIEDGEGLEAGQIVDVEITAASEHDLFGK 443


>gi|254526318|ref|ZP_05138370.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Prochlorococcus
           marinus str. MIT 9202]
 gi|221537742|gb|EEE40195.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Prochlorococcus
           marinus str. MIT 9202]
          Length = 454

 Score =  186 bits (472), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 129/459 (28%), Positives = 238/459 (51%), Gaps = 52/459 (11%)

Query: 33  GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHI----REKAAEKVYSFLGRIR 88
           GC+ N+ D+  M+ +   +GYE  ++++DA+++V+NTC      RE++  K+  +  + +
Sbjct: 22  GCEKNLVDTEHMQGLLDKEGYEVDSNINDANVVVVNTCSFIQTAREESIRKILEYTNQGK 81

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
                         V+VAGC+AQ   +E+++  P +  V+G   Y ++ ++L+R   G+ 
Sbjct: 82  E-------------VIVAGCMAQHFKDELIKEIPEIKGVIGTGDYQKIAKVLDRVEKGEI 128

Query: 149 VVDT----DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
           V +     ++  +++  R   VD     K    A+L I EGC+  C FC++P  RG + S
Sbjct: 129 VNEVSKIPEFIADEEIPRF--VD-----KNKFVAYLRIAEGCNYNCAFCIIPKLRGPQRS 181

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK-GLVRL 263
           R++  +V EA+ L+  G+ EI L+ Q +    G+ + G K + + LL  LS++    +R+
Sbjct: 182 RTIESIVSEAKSLVKQGIQEIILISQ-ITTNYGQDIYG-KPSLAKLLNELSKVPIPWIRI 239

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
            Y  ++P  ++D +I+A  D   ++PY  LP+Q     +LKSMNR   A     I+++IR
Sbjct: 240 HY--AYPTGLTDEVIRAFRDSKNIVPYFDLPLQHSHPDVLKSMNRPWQASLNESILEKIR 297

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              P   + +  IVGFPGE  + F   ++ +D+  +     F +SP  GT   ++  +V 
Sbjct: 298 EEIPSAVLRTSLIVGFPGEKKEHFEHLLEFLDRHKFDHVGVFIFSPEEGTAAFDLPNKVS 357

Query: 384 ENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQ 436
             V   R   ++ +Q+ + + +   N + VG  +++L+EK   +  +L+GR+    P + 
Sbjct: 358 PEVAEARKDNVISVQQNISKDK---NQSYVGLKMKILVEKIS-DNNELIGRTYNFAPEID 413

Query: 437 SVVLNS-------KNHNIGDIIKVRITDVKISTLYGELV 468
             V+ S       KN+ IG  ++  I+      LYGE +
Sbjct: 414 GTVILSVKDKIDLKNY-IGKFVEANISFADEYDLYGETI 451


>gi|30062317|ref|NP_836488.1| hypothetical protein S0828 [Shigella flexneri 2a str. 2457T]
 gi|30040562|gb|AAP16294.1| hypothetical protein S0828 [Shigella flexneri 2a str. 2457T]
 gi|281600159|gb|ADA73143.1| protein yliG [Shigella flexneri 2002017]
 gi|313650263|gb|EFS14675.1| RNA modification enzyme, MiaB family protein [Shigella flexneri 2a
           str. 2457T]
 gi|332763044|gb|EGJ93289.1| RNA modification enzyme, MiaB family protein [Shigella flexneri
           K-671]
 gi|333020987|gb|EGK40245.1| RNA modification enzyme, MiaB family protein [Shigella flexneri
           K-304]
          Length = 441

 Score =  186 bits (472), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 142/462 (30%), Positives = 234/462 (50%), Gaps = 45/462 (9%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  FV S GC  N+ DS R+     ++GY+ V S DDA+++++NTC   + A ++    
Sbjct: 8   PKIGFV-SLGCPKNLVDSERILTELRTEGYDVVPSYDDANMVIVNTCGFIDSAVQESLEA 66

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G   N       E G   V+V GC+   E ++I    P V  + GP +Y ++ E +   
Sbjct: 67  IGEALN-------ENGK--VIVTGCLGAKE-DQIREVHPKVLEITGPHSYEQVLEHVHH- 115

Query: 144 RFGKRVVDTDYSVEDKFER-LSIV-DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
                     Y  + K    LS+V + G        A+L I EGC+  CTFC++P  RG 
Sbjct: 116 ----------YVPKPKHNPFLSLVPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGD 165

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYS 253
            +SR + +V+ EA++L+D GV EI ++ Q+ +A+      R    +GE  K +   L   
Sbjct: 166 LMSRPIGEVLSEAKRLVDAGVKEILVISQDTSAYGVDVKHRTGFHNGEPVKTSMVSLCEQ 225

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
           LS++    RL Y   +P       + A G +   +PYL +P+Q  S RILK M R  +  
Sbjct: 226 LSKLGIWTRLHYVYPYPHVDDVIPLMAEGKI---LPYLDIPLQHASPRILKLMKRPGSVD 282

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
                I + R + P++ + S FIVGFPGET++DF+  +D + +    +   FKYSP  G 
Sbjct: 283 RQLARIKQWREICPELTLRSTFIVGFPGETEEDFQMLLDFLKEARLDRVGCFKYSPVEGA 342

Query: 374 PGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKL 428
             + + +QV E VK E   R + LQ+++  +++      VG+ I V+I++  +E   G+ 
Sbjct: 343 DANALPDQVPEEVKEERWNRFMQLQQQISAERLQEK---VGREILVIIDEVDEEGAIGRS 399

Query: 429 VGRSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468
           +  +P +   V  +   N+  GDI++V++       L+G  V
Sbjct: 400 MADAPEIDGAVYLNGETNVKPGDILRVKVEHADEYDLWGSRV 441


>gi|323137219|ref|ZP_08072298.1| MiaB-like tRNA modifying enzyme YliG [Methylocystis sp. ATCC 49242]
 gi|322397577|gb|EFY00100.1| MiaB-like tRNA modifying enzyme YliG [Methylocystis sp. ATCC 49242]
          Length = 449

 Score =  186 bits (472), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 141/474 (29%), Positives = 222/474 (46%), Gaps = 43/474 (9%)

Query: 13  MVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHI 72
           M   +      P+  FV S GC   + DS R+     ++GYE     + AD++V+NTC  
Sbjct: 1   MQEDLKPNSAAPRVSFV-SLGCPKALVDSERIVTRLRAEGYELARRHEGADVVVVNTCGF 59

Query: 73  REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT 132
            + A  +    +G       + + E G   V+V GC+  AE E I  R P V  + GPQ 
Sbjct: 60  LDSAKAESLEAIG-------AALSENGK--VIVTGCMG-AEPEAIAERFPEVLAITGPQQ 109

Query: 133 YYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTF 192
           Y  + E + RA              D F  L + + G        A+L I EGCD  C+F
Sbjct: 110 YESVVEAVHRAV---------APAHDPFVDL-VPEQGVKLTPRHYAYLKISEGCDNSCSF 159

Query: 193 CVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD------GEKCT 246
           C++P+ RG  +SR  ++V+ EA KL   GV E+ ++ Q+ +A+ G+ L       G++  
Sbjct: 160 CIIPHLRGPLVSRPAAEVLREAEKLARAGVKELLVISQDTSAY-GRDLRYVESMLGDRAV 218

Query: 247 ---FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
              F DL   L E+    RL Y   +P       +   G +   +PYL +P Q  +  +L
Sbjct: 219 RARFLDLARELGELGLWTRLHYVYPYPHVDEVIGLMTEGKI---LPYLDIPFQHAAPNVL 275

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           K+M R     +    I   R+  PD+A+ S FIVGFPGET++DF+  +D +D+    +A 
Sbjct: 276 KAMKRPANEEKTLARIKAWRAACPDLALRSTFIVGFPGETEEDFQLLLDWLDEAEIDRAG 335

Query: 364 SFKYSPRLGTPGSNM-LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422
           +FKY P  G P + + L  V E VK  R     +K +          VG+ ++V+I++ G
Sbjct: 336 AFKYEPVSGAPANELGLAPVPEEVKEARWKRFMEKQQAVSARLMKRKVGKRLQVIIDEAG 395

Query: 423 K------EKGKLVGRSPWL--QSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
                   KG+    +P +   + V + +    GDI+ V++       +YG  V
Sbjct: 396 GGPSGALAKGRTKADAPQIDGAAFVESRRPLRPGDIVTVKVDRADAYDVYGAAV 449


>gi|15605955|ref|NP_213332.1| hypothetical protein aq_474 [Aquifex aeolicus VF5]
 gi|6226379|sp|O66772|Y474_AQUAE RecName: Full=Putative methylthiotransferase aq_474
 gi|2983129|gb|AAC06733.1| hypothetical protein aq_474 [Aquifex aeolicus VF5]
          Length = 410

 Score =  186 bits (472), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 124/395 (31%), Positives = 211/395 (53%), Gaps = 26/395 (6%)

Query: 30  KSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIR----EKAAEKVYSFLG 85
           ++ GC+MN +D+  +++ F  +GYE V+  D AD+ V+NTC +       + + +Y    
Sbjct: 6   ETLGCRMNQFDTDLLKNKFIQKGYEVVSFEDMADVYVINTCTVTVGGDRSSRQAIYQ--A 63

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER--A 143
           + RN K          +VV  GC AQ   +E+ +    V++VVG      L ++LE    
Sbjct: 64  KRRNPKA---------IVVATGCYAQVNPQELAKLKE-VDLVVGNTHKSELLKILEEYLE 113

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           R  K+VV  +   E +      V        GV  FL +QEGC+KFCTFCV+PY RG   
Sbjct: 114 RREKKVVVGEIFREKEVRNFDTVLYF----EGVRPFLKVQEGCNKFCTFCVIPYARGKVR 169

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           S  L ++V + + L   G  E+ L G  ++ +   G D     ++ LL  L +I+G+  +
Sbjct: 170 SVDLEKIVHQVKLLAQKGFKEVVLTGTQLSQY---GWDKGYNLYT-LLTELIKIEGIELI 225

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R ++ H ++M   L+K     + + P+ HL +QSGS+RIL+ M+R +T  EY ++++ I 
Sbjct: 226 RLSSMHIKEMDKELLKLIVSEEKIAPHFHLSLQSGSNRILELMDRGYTREEYEEVVNFIV 285

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
             RP  +I +D IVGFP E+++DF+ T + + +I  +    F YS R  T  S +  ++ 
Sbjct: 286 ENRPISSIGTDVIVGFPTESEEDFQETYEFLKRIPISYMHIFPYSDRPFTKASKLKPKLP 345

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI 418
           E +K ER+  L++  ++++  F +   G+ +  L+
Sbjct: 346 ERIKKERVRILKELDQKKRQEFYEKNKGKELRALV 380


>gi|291616854|ref|YP_003519596.1| YliG [Pantoea ananatis LMG 20103]
 gi|291151884|gb|ADD76468.1| YliG [Pantoea ananatis LMG 20103]
 gi|327393280|dbj|BAK10702.1| 2-methylthioadenine synthetase YliG [Pantoea ananatis AJ13355]
          Length = 442

 Score =  186 bits (472), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 134/452 (29%), Positives = 229/452 (50%), Gaps = 48/452 (10%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           +P R    S GC  N+ DS R+     ++GYE V   DDA+++++NTC   + A ++   
Sbjct: 7   LPPRVGFVSLGCPKNLVDSERILTELRTEGYEVVPRYDDAEIVIVNTCGFIDSAVQESLE 66

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +G   N       E G   V+V GC+  A+ ++I    P V  + GP +Y ++  L   
Sbjct: 67  AIGEALN-------ENGK--VIVTGCLG-AKVDQIREVHPKVLEITGPHSYEQV--LSHV 114

Query: 143 ARFGKRVVDTDYSVEDKFERLSIV-DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
            R+  +     +        LS+V + G        A+L I EGC+  CTFC++P  RG 
Sbjct: 115 HRYVPKPQHNPF--------LSLVPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGD 166

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDL 250
             SR++ +V+DEA++L++ GV E+ ++ Q+ +A           W G  +   K +   L
Sbjct: 167 LDSRAIGEVLDEAKRLVEAGVKELLVISQDTSAYGVDVKHRTGFWNGAPV---KTSMVSL 223

Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
              L+++   VRL Y   +P       + A G +   +PYL +P+Q  S RILK M R  
Sbjct: 224 CEQLAKLGVWVRLHYVYPYPHVDDVIPLMAEGKI---LPYLDIPLQHASPRILKLMKRPG 280

Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370
                 + I R R + P++ + S FIVGFPGET++DF+  +D + +    +   F+YSP 
Sbjct: 281 AVERTLERIKRWREICPELTLRSTFIVGFPGETEEDFQMLLDFIKEARLDRVGCFQYSPV 340

Query: 371 LGTPGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-- 425
            G   + + + VDE VK E   R + LQ+++  +++      VG+ I V+I++  +E   
Sbjct: 341 EGATANQLPDPVDEAVKQERYDRFMQLQQQISAERLQEK---VGREIMVIIDEVDEEGAI 397

Query: 426 GKLVGRSPWLQSVVLNSKNHNI--GDIIKVRI 455
           G+ +  +P +   V  +   N+  GD+++V++
Sbjct: 398 GRSMADAPEIDGAVYLNGESNVKPGDVLRVKV 429


>gi|152969423|ref|YP_001334532.1| ribosomal protein S12 methylthiotransferase [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|238893892|ref|YP_002918626.1| ribosomal protein S12 methylthiotransferase [Klebsiella pneumoniae
           NTUH-K2044]
 gi|262041072|ref|ZP_06014291.1| MiaB family RNA modification enzyme [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|330008410|ref|ZP_08306227.1| ribosomal protein S12 methylthiotransferase RimO [Klebsiella sp. MS
           92-3]
 gi|238066343|sp|A6T6T1|RIMO_KLEP7 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|150954272|gb|ABR76302.1| hypothetical protein KPN_00866 [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|238546208|dbj|BAH62559.1| hypothetical protein KP1_1825 [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
 gi|259041630|gb|EEW42682.1| MiaB family RNA modification enzyme [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|328535155|gb|EGF61659.1| ribosomal protein S12 methylthiotransferase RimO [Klebsiella sp. MS
           92-3]
          Length = 441

 Score =  186 bits (472), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 140/462 (30%), Positives = 237/462 (51%), Gaps = 51/462 (11%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  FV S GC  N+ DS R+     ++GY+ V + D+AD++++NTC   + A ++    
Sbjct: 8   PKIGFV-SLGCPKNLVDSERILTELRTEGYDVVPTYDNADMVIVNTCGFIDSAVQESLEA 66

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G         +KE G   V+V GC+   E ++I    P V  + GP +Y ++ E +   
Sbjct: 67  IGEA-------LKENGK--VIVTGCLGAKE-DQIREVHPKVLEITGPHSYEQVLEHVHH- 115

Query: 144 RFGKRVVDTDYSVEDKFER-LSIV-DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
                     Y+ + K    LS+V + G        A+L I EGC+  CTFC++P  RG 
Sbjct: 116 ----------YTPKPKHNPFLSLVPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGD 165

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE-----------KCTFSDL 250
            +SR + +V+ EA++L D GV E+ ++ Q+ +A+   G+D +           K +   L
Sbjct: 166 LVSRPIGEVLAEAKRLADAGVKELLVISQDTSAY---GVDVKHRTGFHNGMPVKTSMVSL 222

Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
              L+++   VRL Y   +P       + A G +   +PYL +P+Q  S RILK M R  
Sbjct: 223 CEELAKLGIWVRLHYVYPYPHVDDVIPLMAEGKI---LPYLDIPLQHASPRILKLMKRPG 279

Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370
           +A      I + R + PD+ + S FIVGFPGET++DF+  +D + +    +   FKYSP 
Sbjct: 280 SADRQLARIKQWREICPDLTLRSTFIVGFPGETEEDFQMLLDFLKEARLDRVGCFKYSPV 339

Query: 371 LGTPGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-- 425
            G   + + +QV E VK E   R + LQ+++  +++      VG+ I VL+++  +E   
Sbjct: 340 EGATANELADQVPEEVKEERWNRFMQLQQQISAERLQEK---VGREILVLVDEVDEEGAI 396

Query: 426 GKLVGRSPWLQ-SVVLNSKNH-NIGDIIKVRITDVKISTLYG 465
           G+ +  +P +  +V LN +     GD+++V++       L+G
Sbjct: 397 GRSMADAPEIDGAVYLNGETRVKPGDVVRVKVEHADEYDLWG 438


>gi|224371857|ref|YP_002606023.1| 2-methylthioadenine synthetase [Desulfobacterium autotrophicum
           HRM2]
 gi|223694576|gb|ACN17859.1| 2-methylthioadenine synthetase [Desulfobacterium autotrophicum
           HRM2]
          Length = 441

 Score =  186 bits (472), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 148/459 (32%), Positives = 228/459 (49%), Gaps = 37/459 (8%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC-HIREKAAEKVYSFLG 85
            F++S GC  N  DS  M     S G+  V+    AD+I++NTC  I   +AE V + L 
Sbjct: 3   IFLESLGCCRNQVDSEVMLGRLASAGHGIVHDPSQADVIIVNTCGFISAASAEAVDTILD 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQA-EGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
                ++ R K      +VV GC+ +  + +++    P V+V +G      +  ++E   
Sbjct: 63  MAVYKRDGRCKR-----LVVTGCLPERFKHDDLGGELPEVDVFLGTGACDEIVRVVEST- 116

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT----AFLTIQEGCDKFCTFCVVPYTRG 200
            G  V+     V D   R      G+   R +T    A + I EGCD+ CT+C++P  RG
Sbjct: 117 -GSMVL-----VPDVLARQM---QGHPLPRCLTLDYLAHVKISEGCDRHCTYCIIPRLRG 167

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE-IKG 259
           I+ SR +  VV E+  L+ NGV EI L+G+N + + G  LDGE    + LL +LS+ IK 
Sbjct: 168 IQRSRGVDAVVTESELLVKNGVKEIVLVGENTSDY-GVDLDGE-VNLAGLLTTLSQRIKA 225

Query: 260 L-----VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
           L     +RL YT  HP  +   +I+    LD +  Y  +P+Q  S RIL+ M R +T  +
Sbjct: 226 LDPDVWIRLLYT--HPSSLDFDVIRVIAGLDNVCTYFDVPIQHASSRILRRMGRNYTRED 283

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
             ++I  IR   PD A+ +  I GFPGET+ DF   +  V +I + Q   F YS      
Sbjct: 284 LDRLIAFIRKTAPDAALRTTLITGFPGETEADFNELLAFVKEIRFDQLGVFAYSDSDDLA 343

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS-- 432
              + + VDE     R   +     E   S N+A +G+   VL+E++  E G  +GR+  
Sbjct: 344 SHGLKDHVDEETGEARRDAIMAAQAEISESLNEAYLGKTFTVLVEENPDE-GIFLGRTNF 402

Query: 433 --PWLQSVV-LNSKNHNIGDIIKVRITDVKISTLYGELV 468
             P +  +  +  +N +IG  ++V+IT+     L GELV
Sbjct: 403 QAPEVDGITFIYGENIDIGTFVRVKITETHAYDLVGELV 441


>gi|187251699|ref|YP_001876181.1| MiaB family RNA modification enzyme [Elusimicrobium minutum Pei191]
 gi|186971859|gb|ACC98844.1| RNA modification enzyme, MiaB family [Elusimicrobium minutum
           Pei191]
          Length = 409

 Score =  186 bits (472), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 128/448 (28%), Positives = 224/448 (50%), Gaps = 44/448 (9%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F+K++GC++N  +S  + + F  QG    ++ + AD+ +LNTC +  KA   V    
Sbjct: 2   KKVFIKTFGCRVNQVESQALREEFLKQGCSFTDAFETADICLLNTCTVTAKADSDVEKLA 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            RI N +N   +      +++ GC A A   +I +  P               E++ +  
Sbjct: 62  RRITN-RNPMAR------LILTGCYAAAHEGKIKQNLPSA-------------EIINKHN 101

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
             K + DTD    D F  +S   G   R R   AF+ IQ+GCD FC++C++P+ R  ++S
Sbjct: 102 IAKTLFDTD----DDFWAVS---GNEGRSR---AFIKIQDGCDNFCSYCIIPFARNKKLS 151

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           + +   V+E ++LI  G  EI L G N+  +       +    + LL  + +I+G  R+R
Sbjct: 152 KPIPSTVNEIKELISKGFKEIVLTGINIGNYLCPQTGAD---LAVLLKEIFKIEGEYRIR 208

Query: 265 YTTSHPRDMSDCLIKAHGDL-DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           +++     ++D L+ A  +       Y H+P+QSGSD +LK MNRR+   +Y + I  I+
Sbjct: 209 FSSIELNTVTDSLLAAAKEGGSKFCNYFHIPLQSGSDLVLKDMNRRYLTKDYAKRIGEIK 268

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM--LEQ 381
           ++ P I I +D I G+P ET+++F  + + + ++       F YS R GT  +N+  L  
Sbjct: 269 AMFPGIGIYADIIAGYPVETEEEFEKSYNFIKEVALNGLHVFSYSVRPGTKAANLPQLNP 328

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL-VGRSPWLQSVVL 440
           V+   ++++L  L   LR +  +      GQ +E L+E   ++KG+   G +     V  
Sbjct: 329 VEIKKRSDKLRELDFTLRCEFAALQK---GQTLETLVE---RKKGEFNTGVAGNFVRVDF 382

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
             K    G ++KV+I   K     GE++
Sbjct: 383 KGK-AKAGSLVKVKIISFKDGVCIGEML 409


>gi|24213088|ref|NP_710569.1| 2-methylthioadenine synthetase [Leptospira interrogans serovar Lai
           str. 56601]
 gi|45656240|ref|YP_000326.1| hypothetical protein LIC10336 [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|24193787|gb|AAN47587.1| 2-methylthioadenine synthetase [Leptospira interrogans serovar Lai
           str. 56601]
 gi|45599474|gb|AAS68963.1| conserved hypothetical protein [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 437

 Score =  186 bits (472), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 116/402 (28%), Positives = 205/402 (50%), Gaps = 19/402 (4%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           I  Q     + GC++N ++S  +       GY    S +  +++++NTC +  KA  K  
Sbjct: 5   IAEQTVLFNTLGCRLNFFESDGLFASLSKHGYRSAKSEEHPEVVIINTCTVTNKADSKN- 63

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
                 RN   + IK+     + V GC A+ + E I    P V  VVG     +LP ++ 
Sbjct: 64  ------RNTIRNAIKKFPGSQIWVTGCYAETDRESI-EAIPGVAGVVGNTEKSKLPAMIL 116

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
             R      +    + D+F    ++  G+ R     A+L IQ+GC++ C++C +P  RG+
Sbjct: 117 EKRGLIEESELVGKIFDRFSYSDVLPNGHTR-----AYLKIQDGCNRKCSYCKIPQARGL 171

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE-KCTFSDLLYSLSEIKGL 260
            +SR+   V+D+ R L DNGV EI L G N+  +R    D E K  F+ +L  +  I   
Sbjct: 172 GVSRNYQDVLDQVRFLQDNGVGEIVLTGVNLGWYR----DSENKKAFNKILGEILNILEY 227

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R ++  P D+ + L++         P+LH+P+QSG+  ILK M R +T   +R+ ++
Sbjct: 228 SRIRISSIEPPDVGNELVELMTH-PRFTPFLHIPLQSGNSEILKKMKRTYTPETFRKRVE 286

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
             +   P++ + +D IVGFPGET++ F+ ++ ++  +G+A+  +F +S R  T      +
Sbjct: 287 IAKEKIPNLFLGTDIIVGFPGETEEMFQDSVSMIRDLGFAKIHTFPFSVRRNTLAETFPD 346

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422
            V + +K ER+  L    RE    +  + + ++ E ++E+ G
Sbjct: 347 SVSKEIKKERVHTLNSLSRELHQKYALSEIEKVREAILEQGG 388


>gi|148255523|ref|YP_001240108.1| ribosomal protein S12 methylthiotransferase [Bradyrhizobium sp.
           BTAi1]
 gi|238065295|sp|A5EJ58|RIMO_BRASB RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|146407696|gb|ABQ36202.1| SSU ribosomal protein S12P methylthiotransferase [Bradyrhizobium
           sp. BTAi1]
          Length = 441

 Score =  186 bits (472), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 148/473 (31%), Positives = 233/473 (49%), Gaps = 56/473 (11%)

Query: 18  VDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA 77
           + Q   P+  FV S GC   + DS R+     ++GYE     D AD++++NTC   + A 
Sbjct: 1   MQQGSAPKISFV-SLGCPKALVDSERIITRLRAEGYELARKHDGADVVIVNTCGFLDSAK 59

Query: 78  EKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLP 137
           ++  S +G       S + E G   V+V GC+  AE E+I +  P V  + GPQ Y  + 
Sbjct: 60  QESLSAIG-------SAMAENGK--VIVTGCMG-AEPEQIEQAYPGVLSITGPQQYESVL 109

Query: 138 ELLERARFGKRVVDTDYSVEDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
           E + RA           S       L +V   G        A+L I EGC+  CTFC++P
Sbjct: 110 EAVHRA-----------SPPIHNPHLDLVPPQGIKLTPRHYAYLKISEGCNNRCTFCIIP 158

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKC 245
             RG  +SR  + V+ EA +L+  GV E+ ++ Q+ +A           W+ + +   + 
Sbjct: 159 KLRGDLVSRPAADVLREAERLVAAGVKELLVISQDTSAYGLDLKYAESSWKDRSV---RA 215

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
            F DL   L E+   VRL Y   +P       + A G +   +PYL +P Q  S  +LK+
Sbjct: 216 RFLDLARELGELGAWVRLHYVYPYPHVDEVVGLMAEGRV---LPYLDIPFQHASPNVLKA 272

Query: 306 MNRRHTAYEYRQIIDRIRSVR---PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           M RR  A +  + +DRI+S R   PD+A+ S FIVGFPGETD DF   +D +D+    + 
Sbjct: 273 M-RRPAAQD--KTLDRIKSWRAACPDLALRSTFIVGFPGETDADFAYLLDWLDEAEIDRL 329

Query: 363 FSFKYSPRLGTPGSNMLEQVDENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIE 419
             FKY P  G   + + +QV + VK ER   L+  Q+K+  +++      VG   +++I+
Sbjct: 330 GCFKYEPVAGATSNALPDQVPDEVKQERWNALMARQQKISARRLKRK---VGTRQQIIID 386

Query: 420 KHGK--EKGKLVGRSPWLQ-SVVLNSKNH-NIGDIIKVRITDVKISTLYGELV 468
           + G    KG+    +P +  SV ++S+    +G+I+  RI       L+G + 
Sbjct: 387 EVGPTVAKGRSKADAPEIDGSVYVSSRRPLRVGEIVTARIERADEYDLHGTVA 439


>gi|161503979|ref|YP_001571091.1| ribosomal protein S12 methylthiotransferase [Salmonella enterica
           subsp. arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|238066586|sp|A9MIP6|RIMO_SALAR RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|160865326|gb|ABX21949.1| hypothetical protein SARI_02072 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 441

 Score =  186 bits (472), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 140/462 (30%), Positives = 234/462 (50%), Gaps = 45/462 (9%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  FV S GC  N+ DS R+     ++GY+ V   DDAD++++NTC   + A ++    
Sbjct: 8   PKIGFV-SLGCPKNLVDSERILTELRTEGYDVVPRYDDADMVIVNTCGFIDSAVQESLEA 66

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G   N       E G   V+V GC+   E ++I    P V  + GP +Y ++ + +   
Sbjct: 67  IGEALN-------ENGK--VIVTGCLGAKE-DQIREVHPKVLEITGPHSYEQVLQHVHH- 115

Query: 144 RFGKRVVDTDYSVEDKFER-LSIV-DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
                     Y  + K    LS+V + G        A+L I EGC+  CTFC++P  RG 
Sbjct: 116 ----------YVPKPKHNPFLSLVPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGD 165

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYS 253
            +SR +  V+ EA++L+D GV EI ++ Q+ +A+      R    +GE  K + + L   
Sbjct: 166 LVSRPIGDVLSEAKRLVDAGVKEILVISQDTSAYGVDVKHRTGFHNGEPVKTSMASLCEQ 225

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
           LS++    RL Y   +P       + A G +   +PYL +P+Q  S RILK M R  +  
Sbjct: 226 LSKLGVWTRLHYVYPYPHVDDVIPLMAEGKI---LPYLDIPLQHASPRILKLMKRPGSVD 282

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
                I + R + P++ + S FIVGFPGET++DF+  +D + +    +   FKYSP  G 
Sbjct: 283 RQLARIKQWRDICPELTLRSTFIVGFPGETEEDFQMLLDFLKEARLDRVGCFKYSPVEGA 342

Query: 374 PGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKL 428
             + + +QV E VK E   R + LQ+++  +++      VG+ I V++++  +E   G+ 
Sbjct: 343 GANELPDQVPEEVKEERWNRFMQLQQQISAERLQEK---VGREILVIVDEVDEEGAIGRS 399

Query: 429 VGRSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468
           +  +P +   V  +   N+  GDI++V++ +     L+G  V
Sbjct: 400 MADAPEIDGAVYLNGETNVKPGDIVRVKVENADEYDLWGSRV 441


>gi|206901646|ref|YP_002251045.1| hypothetical protein DICTH_1216 [Dictyoglomus thermophilum H-6-12]
 gi|206740749|gb|ACI19807.1| conserved hypothetical protein [Dictyoglomus thermophilum H-6-12]
          Length = 417

 Score =  186 bits (471), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 122/398 (30%), Positives = 206/398 (51%), Gaps = 53/398 (13%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           ++GC++N Y++  ++ +  + G+E V     ADLI +N+C +   A  K    +  I+N 
Sbjct: 8   TFGCKVNQYETEHLKILARNLGFEVVPFGQKADLIFINSCAVTHVAERKARRLINFIKN- 66

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
                    +  +++AGC +                              ER +    ++
Sbjct: 67  ------HFPEAKIILAGCYS------------------------------ERLKLSSEII 90

Query: 151 DTDYSVEDKFERLSIVDGGYN-----RKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
             D  +++K E+     G  N      +    A L IQ+GC+ FC++C+VPY RG E S+
Sbjct: 91  PVDLILDNK-EKWRFFGGDENSGFVSSEDRARAILKIQDGCNNFCSYCIVPYLRGRERSK 149

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLR 264
            L +VV+EA+KL+++G  EI L G  +  +   G D G+K     LL +L EI GL ++R
Sbjct: 150 PLDKVVEEAKKLVESGFKEIILTGIRLGTY---GSDWGDKDALYKLLLNLFEIDGLAKIR 206

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
            ++  P D+++ LI+   D   L  + H+P+QSG D ILK MNRR+    +  II ++R 
Sbjct: 207 LSSIEPMDITENLIEL-ADHPKLCKHWHIPLQSGDDDILKKMNRRYDTKYFENIIYKLRE 265

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             P+IAI++D IVG+P E++++F  T    +KIG+ +   F +SPR  T   ++     E
Sbjct: 266 KVPNIAITTDIIVGYPEESEENFNNTYLFAEKIGFMRIHVFPFSPRPFTKAYDLKPLPYE 325

Query: 385 NV--KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
            +  + E+L+ L  KL +  VS     +G+ IEV++E+
Sbjct: 326 IITKRKEKLIKLSSKLWKTYVS---KFLGKEIEVMVEE 360


>gi|332185732|ref|ZP_08387479.1| RNA modification enzyme, MiaB family protein [Sphingomonas sp. S17]
 gi|332014090|gb|EGI56148.1| RNA modification enzyme, MiaB family protein [Sphingomonas sp. S17]
          Length = 446

 Score =  186 bits (471), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 138/460 (30%), Positives = 214/460 (46%), Gaps = 44/460 (9%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
            P R  + S GC  N+ DS R+     + GY+       AD++++NTC   + A E+   
Sbjct: 7   TPPRVGMVSLGCPKNLVDSERILTQLRADGYQMSPDYAGADVVLVNTCGFLDSAKEESLE 66

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +G         IKE G   V+V GC+ + E E I  R P V  + G   Y ++ E +  
Sbjct: 67  AIGEA-------IKENGR--VIVTGCMGK-EAEAIRTRFPDVLAITGAHEYEQVVEAVHA 116

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           A         D           I D G        ++L I EGC+  C+FC++P  RG  
Sbjct: 117 AAPANLSPYIDL----------IPDAGLKLTPRHYSYLKISEGCNHRCSFCIIPSLRGDL 166

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLL 251
           +SR    ++ EA KL+  G  E+ ++ Q+ +A           W+G+ +       +DL 
Sbjct: 167 VSRRPDAILREAEKLVAAGTRELLVISQDTSAYGIDIRKEPRMWKGQEV---VPHMTDLA 223

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
             L +I   VRL Y   +P       + A G   +++PYL +P Q  +  +L+ M R   
Sbjct: 224 RELGKIAPWVRLHYVYPYPHVDQVIPLMAEG---LVLPYLDIPFQHAAPSVLRRMKRPGN 280

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
             +  Q I + R + PDIAI S F+VGFPGET++DF   +D +D+    +  +F++ P  
Sbjct: 281 DAKVLQRIHQWRDICPDIAIRSTFVVGFPGETEEDFEYLLDWLDEAQLDRVGAFRFEPVE 340

Query: 372 GTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR 431
           G   + + + V E VK ER   + +K      +   A VG+ + V+I+    E+G   GR
Sbjct: 341 GAAANALPDHVPEEVKEERYARIMEKTAAISAAKLAAKVGRTLPVIIDA-VDEEGGATGR 399

Query: 432 S----PWLQ-SVVLNSKNH-NIGDIIKVRITDVKISTLYG 465
           S    P +   V L    H ++GDI+KV I D     LYG
Sbjct: 400 SQADAPEIDGEVFLRDAGHLSVGDIVKVEIEDADEHDLYG 439


>gi|295092195|emb|CBK78302.1| MiaB-like tRNA modifying enzyme [Clostridium cf. saccharolyticum
           K10]
          Length = 443

 Score =  186 bits (471), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 141/444 (31%), Positives = 230/444 (51%), Gaps = 37/444 (8%)

Query: 33  GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92
           GC++N Y++  M+ M    GYE V   + AD+ V+NTC +   A +K    L R + +  
Sbjct: 10  GCKVNAYETEAMQQMLEDAGYEIVPFREGADVYVINTCSVTNVADKKSRQMLHRAKKMNP 69

Query: 93  SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVD- 151
           S +       VV AGC  QA GEE L++   V++V+G      L E+LER        D 
Sbjct: 70  SAV-------VVAAGCYVQAAGEE-LKKDEAVDLVIGNNRKKDLVEVLERYFNEHEGTDD 121

Query: 152 -TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
             D     ++E+L I     + +    AF+ +Q+GC++FC++C++PYTRG   SRS+  V
Sbjct: 122 IIDIGKTSEYEKLHIRKIADHTR----AFIKVQDGCNQFCSYCIIPYTRGRVRSRSMEDV 177

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT--------FSDLLYSLSEIKGLVR 262
           V E   L  +G  EI L G +++++   G D ++             L+  L  I G+ R
Sbjct: 178 VQEVEALAASGYKEIVLTGIHLSSY---GADFKRTAENPEAAADLLSLIVRLDRIPGIER 234

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R  +  PR ++D   +    L    P+ HL +QSG +  LK MNR +T  +Y    + +
Sbjct: 235 IRLGSLEPRIITDEFAETLAGLKSFCPHFHLSLQSGCNETLKRMNRHYTTEDYEARCEIL 294

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R    + AI++D IVGFP ET+++F  T   + +I + +   FKYS R GT  + M  QV
Sbjct: 295 RRYFHNPAITTDVIVGFPQETEEEFEETRQFLKRIHFYEMHIFKYSRREGTRAAVMEGQV 354

Query: 383 DENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK--LVGRS-PWLQ 436
            E  KAER   LL L++++    + +    +G+  EVL+E+     G+  +VG +  +++
Sbjct: 355 PEPKKAERSDILLALEEQM---SLEYRRTFLGKEEEVLLEERISVDGEDYMVGHTRQYVK 411

Query: 437 SVVLNS---KNHNIGDIIKVRITD 457
           +VV      KN  +  +++  +TD
Sbjct: 412 AVVPYREGLKNVTVRGVMERMVTD 435


>gi|237807752|ref|YP_002892192.1| 30S ribosomal protein S12 methylthiotransferase [Tolumonas auensis
           DSM 9187]
 gi|237500013|gb|ACQ92606.1| MiaB-like tRNA modifying enzyme YliG [Tolumonas auensis DSM 9187]
          Length = 442

 Score =  186 bits (471), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 140/462 (30%), Positives = 238/462 (51%), Gaps = 43/462 (9%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
            P+  FV S GC  N+ D+ R+     ++GY+ VN+ D+A+L+++NTC   + A ++   
Sbjct: 7   APKVGFV-SLGCPKNLVDAERILTQLRTEGYDVVNNYDNAELVIVNTCGFIDSAVQESLE 65

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +G         ++E G   V+V GC+   E ++I    P V  + GP  Y ++  L   
Sbjct: 66  AIGEA-------LQENGK--VIVTGCLGAKE-DQIREVHPKVLEISGPHAYEQV--LSHV 113

Query: 143 ARFGKRVVDTDYSVEDKFERLSIV-DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
            ++  +     +        LS+V + G        A+L I EGC+  CTFC++P  RG 
Sbjct: 114 HKYAPKPEHNPF--------LSLVPEQGVKLTPKHYAYLKISEGCNHRCTFCIIPSMRGD 165

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYS 253
             SR++ +V+ EA++L + GV EI ++ Q+ +A+      R    +G   K +   L   
Sbjct: 166 LDSRAIGEVLGEAKRLKNAGVKEILVISQDTSAYGADVKHRTGFYEGSPVKTSMIALCEE 225

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
           L+++   VRL Y   +P       + A G +   +PYL +P+Q  S RILK M R     
Sbjct: 226 LAKMGMWVRLHYVYPYPHVDDVIPLMAEGKI---LPYLDIPLQHASPRILKLMKRPGAIE 282

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
              + I   R + PD+ + S FIVGFPGET++DF+  +D ++K    +   FKYSP  G 
Sbjct: 283 RTLERIQEWRRICPDLTLRSTFIVGFPGETEEDFQMLLDFLEKAELDRVGCFKYSPVDGA 342

Query: 374 PGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKL 428
             + + + V E VK E   R + LQ+K+  ++++   A +G+ ++V++++  +E   G+ 
Sbjct: 343 KANELPDPVPEEVKEERFHRFMELQQKISARRLA---AKIGRELDVIVDEVDEEGAIGRS 399

Query: 429 VGRSPWLQSVV-LNSKNH-NIGDIIKVRITDVKISTLYGELV 468
              +P +  VV LN +     GDI+KV+I +     L+G +V
Sbjct: 400 FADAPEIDGVVYLNGETTLKPGDIVKVKIENSDEYDLWGTVV 441


>gi|225018731|ref|ZP_03707923.1| hypothetical protein CLOSTMETH_02681 [Clostridium methylpentosum
           DSM 5476]
 gi|224948459|gb|EEG29668.1| hypothetical protein CLOSTMETH_02681 [Clostridium methylpentosum
           DSM 5476]
          Length = 409

 Score =  186 bits (471), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 124/427 (29%), Positives = 222/427 (51%), Gaps = 20/427 (4%)

Query: 44  MEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLV 103
           M D+F+  GY+ V+  D+AD+ V+N+C +     +K    L R +       +   D +V
Sbjct: 1   MMDLFYQSGYDVVHCDDEADVYVVNSCTVTSSGDKKARQALRRFK-------RANPDAVV 53

Query: 104 VVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA-RFGKRVVD-TDYSVEDKFE 161
            + GC  QA   ++ ++ P  +V+ G      +   + RA   G+RV++ T +   + FE
Sbjct: 54  ALTGCFPQA-FPDVDKQIPEADVITGSYNRAGIVSAVRRALETGERVIEITPHKKGESFE 112

Query: 162 RLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNG 221
           +++ V     R R   AF+ I++GCD++CT+C++P  RG   S+ ++++ +E R L  NG
Sbjct: 113 KMA-VKKFSERTR---AFVKIEDGCDRYCTYCIIPKARGPVRSKQMAELREELRDLAANG 168

Query: 222 VCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAH 281
             E+ L+G N++++   G D E     D +     + G+ R+R  +  P  ++   I+  
Sbjct: 169 YKEVVLVGINLSSY---GRDLENTRLIDAVRLACSVDGIERVRLGSLEPELLTGEDIQTL 225

Query: 282 GDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPG 341
             L    P  HL +QSG D  LK MNR + + EY +I+  IR+   + +I++D +VGFPG
Sbjct: 226 ASLPKFCPQFHLSLQSGCDATLKRMNRHYDSAEYLRIVQDIRTAFDNPSITTDIMVGFPG 285

Query: 342 ETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQ 401
           ET+++F  ++   +++G A+A  F YS R GT  + M  Q+   VK +R   + +     
Sbjct: 286 ETEEEFAQSLAFAERVGLAKAHVFPYSVREGTAAARM-PQLGGEVKQQRAAEMARLTDRT 344

Query: 402 QVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKIS 461
           + +F +  +G+  EVL E   ++ G   G +     V++ S+    G I  V+I  +   
Sbjct: 345 RRAFLETQLGRTEEVLFET--EQDGYYHGYTKNYTPVLVKSEEALCGQIKCVKIESIVEE 402

Query: 462 TLYGELV 468
              G+L+
Sbjct: 403 KCLGKLL 409


>gi|295092927|emb|CBK82018.1| MiaB-like tRNA modifying enzyme [Coprococcus sp. ART55/1]
          Length = 452

 Score =  186 bits (471), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 115/388 (29%), Positives = 205/388 (52%), Gaps = 27/388 (6%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N  ++  M DM  + G   V   + AD+ ++NTC +   A +K    L R R +
Sbjct: 11  TLGCKVNQAETDSMLDMLKAAGANIVEFDEKADIYIVNTCSVTNIADKKSRQMLHRARKM 70

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL---------E 141
                    D +V+ AGC  Q+   EIL +   +++V+       + E++         E
Sbjct: 71  -------NPDGIVIAAGCYVQS-AREILEQDEAIDIVISNNKKKSITEIVNDYINVRNNE 122

Query: 142 RARFGKRVVDTDYSV----EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197
           +   GK     +Y V    E ++E +    GG+       A++ IQ+GC++FC++C++PY
Sbjct: 123 KNAPGKDHEAMEYFVDISRETEYEEM----GGHVPVGHTRAYVKIQDGCNQFCSYCIIPY 178

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257
            RG   SRS   ++ E  +L + G+ E+ L G +++++ GK  + E     +L+ ++S+I
Sbjct: 179 VRGRIRSRSQEAILAEVSELAEAGIKEVVLTGIHISSY-GKDKNNEGALI-ELIEAISKI 236

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
           KG+ R+R  +  P  +++  ++       + P+ HL +QSG D +LK MNR++T  +Y +
Sbjct: 237 KGIKRIRLGSLEPGIITEEFVERISSNSKVCPHFHLSLQSGCDSVLKRMNRKYTCEQYFE 296

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
             D +R      A+++D IVGFPGET+++F  T+  + ++   +   FKYSPR GT  + 
Sbjct: 297 KCDMLRKAYKSPALTTDVIVGFPGETEEEFAETVRYLTELNLYEMHIFKYSPRKGTVAAA 356

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSF 405
           M EQV   +K ER   L K   + + ++
Sbjct: 357 MKEQVAPEIKNERSDVLLKLAHDNKTAY 384


>gi|291281834|ref|YP_003498652.1| hypothetical protein G2583_1065 [Escherichia coli O55:H7 str.
           CB9615]
 gi|331672336|ref|ZP_08373127.1| putative Fe-S oxidoreductase family 1 [Escherichia coli TA280]
 gi|209775584|gb|ACI86104.1| hypothetical protein ECs0915 [Escherichia coli]
 gi|290761707|gb|ADD55668.1| UPF0004 protein yliG [Escherichia coli O55:H7 str. CB9615]
 gi|320659743|gb|EFX27299.1| ribosomal protein S12 methylthiotransferase [Escherichia coli
           O55:H7 str. USDA 5905]
 gi|331070531|gb|EGI41895.1| putative Fe-S oxidoreductase family 1 [Escherichia coli TA280]
          Length = 441

 Score =  186 bits (471), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 142/462 (30%), Positives = 233/462 (50%), Gaps = 45/462 (9%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  FV S GC  N+ DS R+     ++GY+ V S DDAD++++NTC   + A ++    
Sbjct: 8   PKIGFV-SLGCPKNLVDSERILTELRTEGYDVVPSYDDADMVIVNTCGFIDSAVQESLEA 66

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G   N       E G   V+V GC+   E ++I    P V  + GP +Y ++ E +   
Sbjct: 67  IGEALN-------ENGK--VIVTGCLGAKE-DQIREVHPKVLEITGPHSYEQVLEHVHH- 115

Query: 144 RFGKRVVDTDYSVEDKFER-LSIV-DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
                     Y  + K    LS+V + G        A+L I EGC+  CTFC++P  RG 
Sbjct: 116 ----------YVPKPKHNPFLSLVPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGD 165

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYS 253
            +SR + +V+ EA++L+D GV EI ++ Q+ +A+      R    +GE  K +   L   
Sbjct: 166 LVSRPIGEVLSEAKRLVDAGVKEILVISQDTSAYGVDVKHRTGFHNGEPVKTSMVSLCEQ 225

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
           LS++    RL Y   +P       + A G +   +PYL +P+Q  S RILK M R  +  
Sbjct: 226 LSKLGIWTRLHYVYPYPHVDDVIPLMAEGKI---LPYLDIPLQHASPRILKLMKRPGSVD 282

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
                I + R + P++ + S FIVGFPGET++DF+  +D + +    +   FKYSP  G 
Sbjct: 283 RQLARIKQWREICPELTLRSTFIVGFPGETEEDFQMLLDFLKEARLDRVGCFKYSPVEGA 342

Query: 374 PGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKL 428
             + + + V E VK E   R + LQ+++  +++      VG+ I V+I++  +E   G+ 
Sbjct: 343 DANALPDPVPEEVKEERWNRFMQLQQQISAERLQEK---VGREILVIIDEVDEEGAIGRS 399

Query: 429 VGRSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468
           +  +P +   V  +   N+  GDI++V++       L+G  V
Sbjct: 400 MADAPEIDGAVYLNGETNVKPGDILRVKVEHADEYDLWGSRV 441


>gi|33239573|ref|NP_874515.1| 2-methylthioadenine synthetase [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
 gi|81665118|sp|Q7VE92|RIMO_PROMA RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|33237098|gb|AAP99167.1| 2-methylthioadenine synthetase [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
          Length = 434

 Score =  186 bits (471), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 134/456 (29%), Positives = 224/456 (49%), Gaps = 45/456 (9%)

Query: 33  GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCH-IREKAAEKVYSFLGRIRNLK 91
           GC+ N+ D+  M  +    GY    +  +A L+V+NTC  I++   E V   +G     K
Sbjct: 4   GCEKNLVDTEHMMGLLDQGGYSISTNPSEASLVVVNTCSFIQDAREESVRVLVGLAEQDK 63

Query: 92  NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV- 150
                      +++AGC+AQ   EE+L+  P    ++G   Y  +  +L+R   G+ V  
Sbjct: 64  E----------IIIAGCLAQHFQEELLQSIPEAKAIIGTGDYQNILNVLQRIEQGEIVNQ 113

Query: 151 ---DTDYSVEDKFERLSIVDGGYNRKRG-VTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
              +  +  ++K  R         R  G   A+L I EGCD  C FC++P  RG++ SRS
Sbjct: 114 VSNNPTFVGDEKLPRF--------RTTGKAVAYLKIAEGCDYSCAFCIIPKLRGMQRSRS 165

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK-GLVRLRY 265
           +  +V EA +L   GV E+ L+ Q    + G  L G  C  +DLL  L +++   +R+ Y
Sbjct: 166 IESIVAEANQLAKQGVKELILISQITTNY-GLDLYGRPC-LADLLRELGDVEIPWIRVHY 223

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
             ++P  ++  +IKA  ++  L+PYL LP+Q     +L+ MNR         ++DRIRS 
Sbjct: 224 --AYPTGLTSEVIKAFREVPNLLPYLDLPLQHSHPDVLRLMNRPWQLDLNASLLDRIRSE 281

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            PD    +  IVGFPGET++ F   +  V    +     F +S   GT  +++  Q+  +
Sbjct: 282 LPDAIFRTSLIVGFPGETEEHFNHLVSFVQTQQFDHIGVFTFSSEAGTKAASLANQIPFS 341

Query: 386 V---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSV 438
           V   + ++++ +Q+ + E +   N   +G+ ++VLIE+  K+  + VGR    SP +   
Sbjct: 342 VAEARKDKIISIQQPIAELK---NQNWIGRTVDVLIEREDKDSAEFVGRCARFSPEVDGF 398

Query: 439 VLNSKNH------NIGDIIKVRITDVKISTLYGELV 468
           V    N+      NIG +    IT   +  L G++V
Sbjct: 399 VRLQINNTFTNQLNIGMMTPALITGADLYDLTGQVV 434


>gi|293400696|ref|ZP_06644841.1| Fe-S oxidoreductase [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291305722|gb|EFE46966.1| Fe-S oxidoreductase [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 441

 Score =  186 bits (471), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 119/409 (29%), Positives = 217/409 (53%), Gaps = 21/409 (5%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           F + + GC++N Y+S   E    ++GY++V+  + AD+ ++NTC +   A  K    + +
Sbjct: 4   FAIATLGCKVNTYESQGYESALLAKGYQQVSFKEKADVYIINTCAVTNTAGSKSRQKIHQ 63

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
            + L         + L+ V GC  Q   E+ L +   V++++G      L + +E+A  G
Sbjct: 64  AKALNQ-------NALIAVVGCYVQTAKEQ-LEQQEHVDILIGSDGKRTLADRIEKALQG 115

Query: 147 KRVVDTDYSVED--KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
           ++ V+  + V     FE L I    +  +    AFL IQ+GC++FC++C++PY RG E S
Sbjct: 116 EKQVNEIHDVRALRVFEALPIQHFEHQTR----AFLKIQDGCNQFCSYCIIPYARGAERS 171

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKGLVRL 263
               +V+  A+ L  +G  EI L G +   + G+ ++      + L+  +  E+KGL R+
Sbjct: 172 LPEDEVIKIAQDLCASGHQEIVLSGIHTGRY-GRDIN---TNLTQLMKRMCKEVKGLRRI 227

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R ++    ++SD L+        +  +LH+P+QS ++ +LK+M+R +    +++ +  IR
Sbjct: 228 RISSIEMNEISDELLTFMQKEPKIARHLHIPIQSANNEVLKNMHRPYDVEWFKERVKYIR 287

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           S+ PDI+ISSD IVGFP E+++ F  TM+ + ++  +    F YS R  T  + M   ++
Sbjct: 288 SLMPDISISSDVIVGFPQESEEQFVDTMENIKQMELSFLHIFPYSRRDHTVAATMSGHLE 347

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS 432
             +K ER   L +  +    ++    VG+ + VL EK  ++ G L G +
Sbjct: 348 NKIKKERAARLAQCSKALYTAYKQKFVGKEVSVLFEK--EKDGMLFGHT 394


>gi|261496271|ref|ZP_05992676.1| 2-methylthioadenine synthetase [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|261308102|gb|EEY09400.1| 2-methylthioadenine synthetase [Mannheimia haemolytica serotype A2
           str. OVINE]
          Length = 445

 Score =  186 bits (471), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 134/460 (29%), Positives = 217/460 (47%), Gaps = 50/460 (10%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ DS R+     + GY  + S ++ADL+++NTC   + A ++    +G     
Sbjct: 11  SLGCPKNLVDSERILTELRADGYNIIPSYENADLVIVNTCGFIDSAVQESLESIGEALEA 70

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
                       V+V GC+   E + I    P V  + GP +Y  +   + +        
Sbjct: 71  NGK---------VIVTGCLGAKENQ-IREVHPKVLEITGPHSYEAVMNHVHK-------- 112

Query: 151 DTDYSVEDKFERLS--IVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
              Y  + +F   +  +   G        A+L I EGCD  CTFC++P  RG   SRS+ 
Sbjct: 113 ---YVPKPEFNPYTSLVPKQGIKLTPKHYAYLKISEGCDHRCTFCIIPSMRGDLASRSIV 169

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNA---------------WRGKGLDGEKCTFSDLLYS 253
           QV+DEA++L+D GV E+ ++ Q+ +A               W G  +     T  + L S
Sbjct: 170 QVLDEAKRLVDAGVKELLIVSQDTSAYSLDRKKEEETKTVFWNGMPIKSNLITLCEQLGS 229

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
           +      VRL Y   +P       + A G +   +PYL +P+Q  S +ILK+M R  +  
Sbjct: 230 MGV---WVRLHYVYPYPHVDDLIPLMAAGKI---LPYLDIPLQHASPKILKAMKRPGSIE 283

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
              + I + R + P++ + S FIVGFPGET++DF+  +D + +    +   FK+SP  G 
Sbjct: 284 RTLERIKKWREICPELTLRSTFIVGFPGETEEDFQLLLDFLKEAQLDRVGCFKFSPVEGA 343

Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGR 431
             ++M +QV E VK ER     +  +E   +   A +G+ ++V+I+   +E   G+ +  
Sbjct: 344 VATDMPDQVPEEVKEERFHRFMQLQQEISAARLQAKIGKTVQVIIDDIDEEGIIGRSMAD 403

Query: 432 SPWLQSVVL--NSKNH--NIGDIIKVRITDVKISTLYGEL 467
           +P +  VV   N  N    +G II V IT      L+G L
Sbjct: 404 APEIDGVVYVDNPSNQLVTVGQIISVTITHADEYDLWGIL 443


>gi|56414051|ref|YP_151126.1| ribosomal protein S12 methylthiotransferase [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|81360331|sp|Q5PGP7|RIMO_SALPA RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|56128308|gb|AAV77814.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
          Length = 441

 Score =  186 bits (471), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 142/462 (30%), Positives = 236/462 (51%), Gaps = 45/462 (9%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  FV S GC  N+ DS R+     ++GY+ V   DDAD++++NTC   + A ++    
Sbjct: 8   PKIGFV-SLGCPKNLVDSERILTELRTEGYDVVPRYDDADMVIVNTCGFIDSAVQESLEA 66

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G   N       E G   V+V GC+   E ++I    P V  + GP +Y ++ + +   
Sbjct: 67  IGEALN-------ENGK--VIVTGCLGAKE-DQIREVHPKVLEITGPHSYEQVLQHVHH- 115

Query: 144 RFGKRVVDTDYSVEDKFER-LSIV-DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
                     Y  + K    LS+V + G        A+L I EGC+  CTFC++P  RG 
Sbjct: 116 ----------YVPKPKHNPFLSLVPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGD 165

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYS 253
            +SR +  V+ EA++L+D GV EI ++ Q+ +A+      R    +GE  K +   L   
Sbjct: 166 LVSRPIGDVLSEAKRLVDAGVKEILVISQDTSAYGVDVKHRTGFHNGEPVKTSMVSLCEQ 225

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
           LS++    RL Y   +P       + A G +   +PYL +P+Q  S RILK M R  +  
Sbjct: 226 LSKLGVWTRLHYVYPYPHVDDVIPLMAEGKI---LPYLDIPLQHASPRILKLMKRPGSVD 282

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
                I + R + P++ + S FIVGFPGET++DF+  +D + +    +   FKYSP  G 
Sbjct: 283 RQLARIKQWREICPELTLRSTFIVGFPGETEEDFQMLLDFLKEARLDRVGCFKYSPVEGA 342

Query: 374 PGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKL 428
             + + +QV E VK E   R + LQ+++  +++      VG+ I V++++  +E   G+ 
Sbjct: 343 GANELPDQVPEEVKEERWNRFMQLQQQISAERLQEK---VGREILVIVDEVDEEGAIGRS 399

Query: 429 VGRSPWLQ-SVVLNSK-NHNIGDIIKVRITDVKISTLYGELV 468
           +  +P +  +V LN + N  +GDI++V++ +     L+G  V
Sbjct: 400 MADAPEIDGAVYLNGETNVKLGDIVRVKVENADEYDLWGSRV 441


>gi|254361128|ref|ZP_04977272.1| 2-methylthioadenine synthetase [Mannheimia haemolytica PHL213]
 gi|153092619|gb|EDN73668.1| 2-methylthioadenine synthetase [Mannheimia haemolytica PHL213]
          Length = 445

 Score =  186 bits (471), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 134/460 (29%), Positives = 217/460 (47%), Gaps = 50/460 (10%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ DS R+     + GY  + S ++ADL+++NTC   + A ++    +G     
Sbjct: 11  SLGCPKNLVDSERILTELRADGYNIIPSYENADLVIVNTCGFIDSAVQESLESIGEALEA 70

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
                       V+V GC+   E + I    P V  + GP +Y  +   + +        
Sbjct: 71  NGK---------VIVTGCLGAKENQ-IREVHPKVLEITGPHSYEAVMNHVHK-------- 112

Query: 151 DTDYSVEDKFERLS--IVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
              Y  + +F   +  +   G        A+L I EGCD  CTFC++P  RG   SRS+ 
Sbjct: 113 ---YVPKPEFNPYTSLVPKQGIKLTPKHYAYLKISEGCDHRCTFCIIPSMRGDLASRSIV 169

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNA---------------WRGKGLDGEKCTFSDLLYS 253
           QV+DEA++L+D GV E+ ++ Q+ +A               W G  +     T  + L S
Sbjct: 170 QVLDEAKRLVDAGVKELLIVSQDTSAYSLDRKKEEATKTVFWNGMPIKSNLITLCEQLGS 229

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
           +      VRL Y   +P       + A G +   +PYL +P+Q  S +ILK+M R  +  
Sbjct: 230 MGV---WVRLHYVYPYPHVDDLIPLMAAGKI---LPYLDIPLQHASPKILKAMKRPGSIE 283

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
              + I + R + P++ + S FIVGFPGET++DF+  +D + +    +   FK+SP  G 
Sbjct: 284 RTLERIKKWREICPELTLRSTFIVGFPGETEEDFQLLLDFLKEAQLDRVGCFKFSPVEGA 343

Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGR 431
             ++M +QV E VK ER     +  +E   +   A +G+ ++V+I+   +E   G+ +  
Sbjct: 344 VATDMPDQVPEEVKEERFHRFMQLQQEISAARLQAKIGKTVQVIIDDIDEEGIIGRSMAD 403

Query: 432 SPWLQSVVL--NSKNH--NIGDIIKVRITDVKISTLYGEL 467
           +P +  VV   N  N    +G II V IT      L+G L
Sbjct: 404 APEIDGVVYVDNPSNQLVTVGQIISVTITHADEYDLWGIL 443


>gi|167854805|ref|ZP_02477583.1| hypothetical protein HPS_00775 [Haemophilus parasuis 29755]
 gi|167854103|gb|EDS25339.1| hypothetical protein HPS_00775 [Haemophilus parasuis 29755]
          Length = 443

 Score =  186 bits (471), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 142/464 (30%), Positives = 223/464 (48%), Gaps = 47/464 (10%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
            P   FV S GC  N+ DS R+     S GY  ++S + ADL+++NTC   + A ++   
Sbjct: 4   APNIGFV-SLGCPKNLVDSERILTELRSDGYNIISSYEGADLVIVNTCGFIDSAVQESLE 62

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +G                 V+V GC+   E + I    P V  + GP +Y  +      
Sbjct: 63  SIGEALEANGK---------VIVTGCLGAKENQ-IREVHPKVLEITGPHSYEAV-----M 107

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
               K V   +Y+       +S+V   G        A+L I EGCD  CTFC++P  RG 
Sbjct: 108 KHVHKYVPKPEYN-----PYVSLVPKQGIKLTPKHYAYLKISEGCDHRCTFCIIPSMRGD 162

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR--GKGLDGEKCTFSD---------- 249
             SR + QV+DEA++L+D+GV E+ ++ Q+ +A+    K  +G K  F +          
Sbjct: 163 LDSRPIVQVLDEAKRLVDSGVKELLIVSQDTSAYALDKKKEEGTKTVFWNGMPIKNNLIA 222

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
           L   L  +   VRL Y   +P       + A G L   +PYL +P+Q  S +ILK+M R 
Sbjct: 223 LCEQLGSMGVWVRLHYVYPYPHVDDLIPLMAQGKL---LPYLDIPLQHASPKILKAMKRP 279

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369
            +     + I + R + PD+ + S FIVGFPGET++DF+  +D + +    +   FK+SP
Sbjct: 280 GSIDRTLERIKKWREICPDLTLRSTFIVGFPGETEEDFQMLLDFLKEAQLDRVGCFKFSP 339

Query: 370 RLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFN--DACVGQIIEVLIEKHGKEK-- 425
             G   + M +QV E VK ER     +   +QQ+S +     +G+ + V++++  KE   
Sbjct: 340 VDGAVATEMEDQVPEEVKEERFHRFMQ--LQQQISADRLQQKIGRTLSVIVDEIDKEGII 397

Query: 426 GKLVGRSPWLQSVV----LNSKNHNIGDIIKVRITDVKISTLYG 465
           G+ +  +P +  VV    L+     +G II V IT      L+G
Sbjct: 398 GRSMADAPEIDGVVYVDNLSGAEVKVGQIISVTITQADEYDLWG 441


>gi|146297144|ref|YP_001180915.1| MiaB-like tRNA modifying enzyme YliG [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|238065313|sp|A4XLD9|RIMO_CALS8 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|145410720|gb|ABP67724.1| SSU ribosomal protein S12P methylthiotransferase
           [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 440

 Score =  186 bits (471), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 132/454 (29%), Positives = 231/454 (50%), Gaps = 37/454 (8%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ DS  M       G+E   + +DAD+IV+NTC     A ++    +  +   
Sbjct: 8   SLGCNKNLVDSEIMMGACKEAGFEITPNAEDADVIVINTCGFINDAKQESIDTILEMAEY 67

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK--- 147
           KN + K      ++V GC++Q   ++IL+  P V+ ++G +   +LP ++++   G+   
Sbjct: 68  KNKKCK-----FLIVTGCLSQRYKDDILKELPEVDAILGVKEMLKLPNVIKKLYEGESKL 122

Query: 148 RVVD--TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           +V D    +       RL      Y       A++ I EGC+  C++C +P  RG   SR
Sbjct: 123 QVFDDKPTFVYTSSMPRLIATPKFY-------AYIKIAEGCNNRCSYCSIPLIRGNYTSR 175

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLR 264
            +  ++ EARKL ++G  EI L  Q+   +   G+D  +K   + LL  LSEI  +  +R
Sbjct: 176 YIDDIIQEARKLSEDGYKEIVLTAQDTTKY---GIDIYQKKMLATLLQKLSEIDNIKWIR 232

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +  S+P D+ D L+     L  ++ Y  +P+Q  ++RILK MNR+ ++   +++I RIRS
Sbjct: 233 FLYSYPEDIDDELLNIVKSLPKVVKYFDIPIQHINNRILKLMNRKTSSEGIKELIQRIRS 292

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
              ++ I +  +VGFP E++D+F    + V    + +  +F YS   GTP ++ L Q D+
Sbjct: 293 AFDEVVIRTTVMVGFPTESEDEFEELYEFVKWAKFDRLGAFMYSQEEGTPAAD-LPQTDD 351

Query: 385 NVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL-VGRSPWLQS--- 437
             K    ER+L LQ+K+  ++   N   + +  EV+IE  G+++    + RS +      
Sbjct: 352 ETKVKRYERILNLQRKISLER---NRKRISKKYEVVIE--GRDRNNFYIARSQFEAPEVD 406

Query: 438 ---VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
              +V + +    G+ + V+I D     L GE++
Sbjct: 407 GKIIVFSKRKLLPGEFVVVKILDAFEYDLVGEVI 440


>gi|50121632|ref|YP_050799.1| ribosomal protein S12 methylthiotransferase [Pectobacterium
           atrosepticum SCRI1043]
 gi|81644718|sp|Q6D3N6|RIMO_ERWCT RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|49612158|emb|CAG75608.1| conserved hypothetical protein [Pectobacterium atrosepticum
           SCRI1043]
          Length = 442

 Score =  186 bits (471), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 137/463 (29%), Positives = 230/463 (49%), Gaps = 47/463 (10%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  FV S GC  N+ DS R+     ++GY+ V   DDA+L+++NTC   + A ++    
Sbjct: 9   PRIGFV-SLGCPKNLVDSERILTELRTEGYQVVPRYDDAELVIVNTCGFIDSAVQESLEA 67

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G   N       E G   V+V GC+   E + I    P V  + GP +Y ++  L    
Sbjct: 68  IGEALN-------ENGK--VIVTGCLGAKENQ-IREVHPKVLEITGPHSYEQV--LSHVH 115

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           ++  +     ++     + + +    Y       A+L I EGC+  CTFC++P  RG   
Sbjct: 116 QYVPKPTHNPFTSLVPEQGVKLTPRHY-------AYLKISEGCNHRCTFCIIPSMRGDLD 168

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLY 252
           SR +  V+DEA++L++ GV E+ ++ Q+ +A           W G+ +   K +   L  
Sbjct: 169 SRPIGSVLDEAKRLVNAGVKELLVISQDTSAYGADVKQRTGFWNGQPV---KTSMVSLCE 225

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
            L+ +   VRL Y   +P       + A G +   +PYL +P+Q  S +ILK M R    
Sbjct: 226 QLASLGVWVRLHYVYPYPHVDDVIPLMAEGKI---LPYLDIPLQHASPKILKLMKRPGAV 282

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
               + I R R + PD+ + S FIVGFPGET++DF+  +D + +    +   FK+SP  G
Sbjct: 283 ERTLERIKRWREICPDLTLRSTFIVGFPGETEEDFQMLLDFLKEAKLDRVGCFKFSPVEG 342

Query: 373 TPGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GK 427
              + + +QV E VK E   R + LQ+ +  Q++      +G+ + VLI++  +E   G+
Sbjct: 343 AAANELPDQVPEEVKEERFHRFMQLQQAISTQRLQDK---IGREVLVLIDEIDEEGAIGR 399

Query: 428 LVGRSPWLQ-SVVLNSKNH-NIGDIIKVRITDVKISTLYGELV 468
            +  +P +  +V LN +    +GDI+KV++       L+G  V
Sbjct: 400 SMADAPEIDGAVYLNGETGVKVGDIVKVKVEHADEYDLWGSRV 442


>gi|74311379|ref|YP_309798.1| ribosomal protein S12 methylthiotransferase [Shigella sonnei Ss046]
 gi|110804833|ref|YP_688353.1| ribosomal protein S12 methylthiotransferase [Shigella flexneri 5
           str. 8401]
 gi|123048317|sp|Q0T6C8|RIMO_SHIF8 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|123773546|sp|Q3Z3U9|RIMO_SHISS RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|73854856|gb|AAZ87563.1| conserved hypothetical protein [Shigella sonnei Ss046]
 gi|110614381|gb|ABF03048.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401]
 gi|323165766|gb|EFZ51552.1| RNA modification enzyme, MiaB family protein [Shigella sonnei 53G]
          Length = 441

 Score =  186 bits (471), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 142/462 (30%), Positives = 233/462 (50%), Gaps = 45/462 (9%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  FV S GC  N+ DS R+     ++GY+ V S DDAD++++NTC   + A ++    
Sbjct: 8   PKIGFV-SLGCPKNLVDSERILTELRTEGYDVVPSYDDADMVIVNTCGFIDSAVQESLEA 66

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G   N       E G   V+V GC+   E ++I    P V  + GP +Y ++ E +   
Sbjct: 67  IGEALN-------ENGK--VIVTGCLGAKE-DQIREVHPKVLEITGPHSYEQVLEHVHH- 115

Query: 144 RFGKRVVDTDYSVEDKFER-LSIV-DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
                     Y  + K    LS+V + G        A+L I EGC+  CTFC++P  RG 
Sbjct: 116 ----------YVPKPKHNPFLSLVPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGD 165

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYS 253
            +SR + +V+ EA++L+D GV EI ++ Q+ +A+      R    +GE  K +   L   
Sbjct: 166 LVSRPIGEVLSEAKRLVDAGVKEILVISQDTSAYGVDVKHRTGFHNGEPVKTSMVSLCEQ 225

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
           LS++    RL Y   +P       + A G +   +PYL +P+Q  S RILK M R  +  
Sbjct: 226 LSKLGIWTRLHYVYPYPHVDDVIPLMAEGKI---LPYLDIPLQHASPRILKLMKRPGSVD 282

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
                I + R + P++ + S FIVGFP ET++DF+  +D + +    +   FKYSP  G 
Sbjct: 283 RQLARIKQWREICPELTLRSTFIVGFPSETEEDFQMLLDFLKEARLDRVGCFKYSPVEGA 342

Query: 374 PGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKL 428
             + + +QV E VK E   R + LQ+++  +++      VG+ I V+I++  +E   G+ 
Sbjct: 343 DANALPDQVPEEVKEERWNRFMQLQQQISAERLQEK---VGREILVIIDEVDEEGAIGRS 399

Query: 429 VGRSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468
           +  +P +   V  +   N+  GDI++V++       L+G  V
Sbjct: 400 MADAPEIDGAVYLNGETNVKPGDILRVKVEHADEYDLWGSRV 441


>gi|191166154|ref|ZP_03027988.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli B7A]
 gi|190903763|gb|EDV63478.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli B7A]
          Length = 441

 Score =  186 bits (471), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 142/462 (30%), Positives = 233/462 (50%), Gaps = 45/462 (9%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  FV S GC  N+ DS R+     ++GY+ V S DDAD++++NTC   + A ++    
Sbjct: 8   PKIGFV-SLGCPKNLVDSERILTELRTEGYDVVPSYDDADMVIVNTCGFIDSAVQESLEA 66

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G   N       E G   V+V GC+   E ++I    P V  + GP +Y ++ E +   
Sbjct: 67  IGEALN-------ENGK--VIVTGCLGAKE-DQIREVHPKVLEITGPHSYEQVLEHVHH- 115

Query: 144 RFGKRVVDTDYSVEDKFER-LSIV-DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
                     Y  + K    LS+V + G        A+L I EGC+  CTFC++P  RG 
Sbjct: 116 ----------YVPKPKHNPFLSLVPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGD 165

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYS 253
            +SR + +V+ EA++L+D GV EI ++ Q+ +A+      R    +GE  K +   L   
Sbjct: 166 LVSRPIGEVLSEAKRLVDAGVKEILVISQDTSAYGVDVKHRTGFHNGEPVKTSMVSLCEQ 225

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
           LS++    RL Y   +P       + A G +   +PYL +P+Q  S RILK M R  +  
Sbjct: 226 LSKLGIWTRLHYVYPYPHVDDVIPLMAEGKI---LPYLDIPLQHASPRILKLMKRPGSVD 282

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
                I + R + P++ + S FIVGFPGET++DF+  +D + +    +   FKYSP  G 
Sbjct: 283 RQLARIKQWREICPELTLRSTFIVGFPGETEEDFQMLLDFLKEARLDRVGCFKYSPVEGA 342

Query: 374 PGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKL 428
             + + +QV E VK E   R + LQ+++  +++      VG+ I V+I++  +E   G+ 
Sbjct: 343 DANALPDQVPEEVKEERWNRFMQLQQQISAERLQEK---VGREILVIIDEVDEEGAIGRS 399

Query: 429 VGRSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468
           +  +P +   V  +   N+   DI++V++       L+G  V
Sbjct: 400 MADAPEIDGAVYLNGETNVKPSDILRVKVEHADEYDLWGSRV 441


>gi|310779510|ref|YP_003967843.1| MiaB-like tRNA modifying enzyme [Ilyobacter polytropus DSM 2926]
 gi|309748833|gb|ADO83495.1| MiaB-like tRNA modifying enzyme [Ilyobacter polytropus DSM 2926]
          Length = 437

 Score =  186 bits (471), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 119/403 (29%), Positives = 210/403 (52%), Gaps = 23/403 (5%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  ++      GY+ VN  D AD+ ++N+C +   A  K  + L R +  
Sbjct: 11  TLGCKVNQYETESIKKQLSDLGYDEVNFDDKADVYIVNSCTVTTIADRKTRNMLRRAK-- 68

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL---ERARFGK 147
                K   D LV+  GC AQ   ++ L     ++ V+G      +  L+   E  +  +
Sbjct: 69  -----KNNPDSLVIATGCYAQTNAKD-LEGIKEIDYVIGNSDKSGIINLINNIESEKTSE 122

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVT-AFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           RV+  +     ++E L      ++  R ++ A++ IQ+GC+ FC++C +P+ RG   SR 
Sbjct: 123 RVIHRNIFDAKEYEELE-----FSTLREMSRAYIKIQDGCNNFCSYCKIPFARGKSRSRK 177

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRY 265
           L  ++ EA  L   G  EI ++G N+  +   G D  E   F  LL  +S++ G+ R+R 
Sbjct: 178 LKSILKEAVILAKEGFKEIIIIGINLGVY---GEDIPENGDFETLLDEISKVDGIERIRI 234

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
            + +P  +SD  I+   +   LMP+LH+ +QS  D ILK+MNR + +   ++ + ++++ 
Sbjct: 235 GSMYPDKISDRFIELMKNNSKLMPHLHISLQSCDDEILKAMNRNYDSQLIKERLLKLKNT 294

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
             +I  ++D IVGFPGE + +F  T+ ++ ++G++    F+YS R  T  S + E+VD  
Sbjct: 295 VENIEYTADVIVGFPGENEKNFENTVSVIKEVGFSDLHIFQYSDRENTAASRLPEKVDSK 354

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE--KHGKEKG 426
            K  R   L+      Q    +  VG+ +EVL+E  K+G   G
Sbjct: 355 TKKSRAEKLENLKVNMQKLLGERYVGKTMEVLVEETKNGNTYG 397


>gi|212711339|ref|ZP_03319467.1| hypothetical protein PROVALCAL_02411 [Providencia alcalifaciens DSM
           30120]
 gi|212686068|gb|EEB45596.1| hypothetical protein PROVALCAL_02411 [Providencia alcalifaciens DSM
           30120]
          Length = 444

 Score =  186 bits (471), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 139/466 (29%), Positives = 232/466 (49%), Gaps = 51/466 (10%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           VP+  FV S GC  N+ DS R+     + GY+ V S DDADL+++NTC   + A ++   
Sbjct: 8   VPKIGFV-SLGCPKNLVDSERILTELRTDGYQVVPSYDDADLVIVNTCGFIDSAVQESLE 66

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +G   N       E G   V+V GC+   E + I    P V  + GP +Y ++   +  
Sbjct: 67  AIGEALN-------ENGK--VIVTGCLGAKENQ-IREVHPKVLEITGPHSYEQVLNHVHH 116

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
                          D F  L + + G        A+L I EGC+  CTFC++P  RG  
Sbjct: 117 Y--------VPKPEHDPFFSL-VPEQGVKLTPKHYAYLKISEGCNHRCTFCIIPSMRGDL 167

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLL 251
            SR++  V++EA++L+++GV E+ ++ Q+ +A           W GK +   K +   L 
Sbjct: 168 DSRAIGDVLNEAKRLVESGVKELLVISQDTSAYGVDVKHRMGFWDGKPV---KTSMVGLC 224

Query: 252 YSLSEIKGLVRLRYTTSHPR--DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
             L+ +   VRL Y   +P   D+   +++       ++PYL +P+Q  S +ILK M R 
Sbjct: 225 EQLASMGVWVRLHYVYPYPHVDDVIPLMVEGK-----VLPYLDIPLQHASPKILKLMKRP 279

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369
                  + I R R + P++ + S FIVGFPGET++DF+  +D + +    +   FKYSP
Sbjct: 280 GAVERTLERIKRWREMCPELTLRSTFIVGFPGETEEDFQMLLDFLQEARLDRVGCFKYSP 339

Query: 370 RLGTPGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK- 425
             G   + + +QV E+VK E   R + LQ+++  Q++      VG+ + V++++   E  
Sbjct: 340 VEGAKANELADQVPEDVKEERYHRFMQLQQEISTQRLQEK---VGRELWVIVDEVDDEGA 396

Query: 426 -GKLVGRSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468
            G+ +  +P +  +V  +   ++  GDI+KV I       L+G +V
Sbjct: 397 VGRSMADAPEIDGMVYLNGEFDVKAGDIVKVLIEHADEYDLWGTVV 442


>gi|229828421|ref|ZP_04454490.1| hypothetical protein GCWU000342_00482 [Shuttleworthia satelles DSM
           14600]
 gi|229793015|gb|EEP29129.1| hypothetical protein GCWU000342_00482 [Shuttleworthia satelles DSM
           14600]
          Length = 450

 Score =  186 bits (471), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 119/411 (28%), Positives = 211/411 (51%), Gaps = 34/411 (8%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +R  + + GC++N Y++  M+ M  + GY+ V   D AD+ ++NTC +   A  K    +
Sbjct: 2   RRAALHNLGCKVNSYETEAMQQMLEAAGYQIVPFQDQADVYIINTCSVTNMADAKSRQMI 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQ---AEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
            R R       ++  D +VV  GC  Q    E EE L     +++++G     +L   ++
Sbjct: 62  HRAR-------RKNPDAIVVATGCYVQTSAGEAEEDLS----IDIIIGNNRKTQLVRAID 110

Query: 142 RARFGKRVVD--TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
             R   R V    + S +  +ERL +     + +    AF+ +Q+GC++FC++C++P  R
Sbjct: 111 EFRRDHRRVKELAEDSRQPDYERLQLTRTAEHTR----AFIKVQDGCNQFCSYCIIPLAR 166

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT--------FSDLL 251
           G   SRS   V+ E R L  +G  E+ L G +++++     + +  +          +L+
Sbjct: 167 GRIRSRSPKDVLKEVRGLAASGYQEVVLNGIHLSSYGMTSYNRQVASEEMAGGGHLMELV 226

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
            +++ ++G+ R+R  +  PR +     +    ++ + P+ HL +QSG D  LK MNRR+T
Sbjct: 227 EAVAGVEGIRRIRLGSMEPRLVDRAFAERLARVEKICPHFHLSLQSGCDETLKRMNRRYT 286

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
             ++RQ +  +R      AI++D IVGFP ET+++F A+   +++I + +   FKYS R 
Sbjct: 287 TQDFRQAVALLRENFAHPAITTDVIVGFPQETEEEFEASRHFLEEIRFYEMHIFKYSRRR 346

Query: 372 GTPGSNMLEQVDENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIE 419
           GT    M  Q+DE  K+ R   LL L  ++      F    +G+  EVL+E
Sbjct: 347 GTLADTMPGQLDEETKSRRSHVLLALADRM---SAEFRRQEIGREAEVLME 394


>gi|291087073|ref|ZP_06345323.2| tRNA-I(6)A37 thiotransferase enzyme MiaB [Clostridium sp. M62/1]
 gi|291076389|gb|EFE13753.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Clostridium sp. M62/1]
          Length = 452

 Score =  186 bits (471), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 141/444 (31%), Positives = 230/444 (51%), Gaps = 37/444 (8%)

Query: 33  GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92
           GC++N Y++  M+ M    GYE V   + AD+ V+NTC +   A +K    L R + +  
Sbjct: 19  GCKVNAYETEAMQQMLEDAGYEIVPFREGADVYVINTCSVTNVADKKSRQMLHRAKKMNP 78

Query: 93  SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVD- 151
           S +       VV AGC  QA GEE L++   V++V+G      L E+LER        D 
Sbjct: 79  SAV-------VVAAGCYVQAAGEE-LKKDEAVDLVIGNNRKKDLVEVLERYFNEHEGTDD 130

Query: 152 -TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
             D     ++E+L I     + +    AF+ +Q+GC++FC++C++PYTRG   SRS+  V
Sbjct: 131 IIDIGKTSEYEKLHIRKIADHTR----AFIKVQDGCNQFCSYCIIPYTRGRVRSRSMEDV 186

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT--------FSDLLYSLSEIKGLVR 262
           V E   L  +G  EI L G +++++   G D ++             L+  L  I G+ R
Sbjct: 187 VQEVEALAASGYKEIVLTGIHLSSY---GADFKRTAENPEAAADLLSLIVRLDRIPGIER 243

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R  +  PR ++D   +    L    P+ HL +QSG +  LK MNR +T  +Y    + +
Sbjct: 244 IRLGSLEPRIITDEFAETLAGLKSFCPHFHLSLQSGCNETLKRMNRHYTTEDYEARCEIL 303

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R    + AI++D IVGFP ET+++F  T   + +I + +   FKYS R GT  + M  QV
Sbjct: 304 RRYFHNPAITTDVIVGFPQETEEEFEETRQFLKRIHFYEMHIFKYSRREGTRAAVMEGQV 363

Query: 383 DENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK--LVGRS-PWLQ 436
            E  KAER   LL L++++    + +    +G+  EVL+E+     G+  +VG +  +++
Sbjct: 364 PEPKKAERSDILLALEEQM---SLEYRRTFLGKEEEVLLEERISVDGEDYMVGHTRQYVK 420

Query: 437 SVVLNS---KNHNIGDIIKVRITD 457
           +VV      KN  +  +++  +TD
Sbjct: 421 AVVPYREGLKNVTVRGVMERMVTD 444


>gi|260459455|ref|ZP_05807710.1| MiaB-like tRNA modifying enzyme YliG [Mesorhizobium opportunistum
           WSM2075]
 gi|259035009|gb|EEW36265.1| MiaB-like tRNA modifying enzyme YliG [Mesorhizobium opportunistum
           WSM2075]
          Length = 437

 Score =  185 bits (470), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 151/465 (32%), Positives = 225/465 (48%), Gaps = 49/465 (10%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
            P+  FV S GC   + DS R+     ++GYE     D ADL+V+NTC   + A ++  +
Sbjct: 3   APRVSFV-SLGCPKALVDSERIITRLRAEGYEIARKHDGADLVVVNTCGFLDSARDESLN 61

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +G       S + E G   V+V GC+  AE + I  + P V  + GPQ Y  +   +  
Sbjct: 62  AIG-------SALSENGR--VIVTGCLG-AEPDVIREKHPNVLAITGPQAYESVMAAVHE 111

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           A              D +  L    G     R   A+L I EGC+  CTFC++P  RG  
Sbjct: 112 AA---------PPSHDPYIDLLPPQGVKLTPRHY-AYLKISEGCNNRCTFCIIPALRGDL 161

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE-----------KCTFSDLL 251
           +SR  + V+ EA KL   GV E+ ++ Q+ +A+   G+D +           +  F DL 
Sbjct: 162 VSRPAADVLREAEKLAKAGVKELLVISQDTSAY---GIDIKYQTSLFGDREVRAKFLDLS 218

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
             L ++   VR+ Y   +P       + A G +   +PYL +P Q  S ++LK+M R   
Sbjct: 219 QELGKLGIWVRMHYVYPYPHVADVIPLMAEGKI---LPYLDIPFQHASPQVLKNMRRPAH 275

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
             +  + I   R V PD+AI S FIVGFPGETDDDF   +D +D+    +A  FKY P  
Sbjct: 276 GEKTLERIRGWRDVCPDLAIRSTFIVGFPGETDDDFEMLLDWLDEAKIDRAGCFKYEPVR 335

Query: 372 GTPGSNM-LEQVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKE-K 425
           G   +++ LEQV + +K     R +  Q+K+   Q++     VG+ + VLI E HG   K
Sbjct: 336 GARSNDLGLEQVPQEIKEARWHRFMQRQQKISATQLAKK---VGKRLPVLIDEAHGTSAK 392

Query: 426 GKLVGRSPWLQ-SVVLNSKNH-NIGDIIKVRITDVKISTLYGELV 468
           G+    +P +  SV + S+     GDI+ V+I       LYG  V
Sbjct: 393 GRTKYDAPEIDGSVHIQSRRPLRAGDIVTVKIDRADAYDLYGSAV 437


>gi|300775750|ref|ZP_07085611.1| 2-methylthioadenine synthetase [Chryseobacterium gleum ATCC 35910]
 gi|300505777|gb|EFK36914.1| 2-methylthioadenine synthetase [Chryseobacterium gleum ATCC 35910]
          Length = 448

 Score =  185 bits (470), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 123/411 (29%), Positives = 209/411 (50%), Gaps = 32/411 (7%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N  ++  +       GYE+V+  + A++ V+NTC + E A  +    + R    
Sbjct: 12  TLGCKLNFAETSTIARQLTDAGYEKVSFDEKANVYVINTCSVTENADRECKLHVKRA--- 68

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK--- 147
               +K   + LVV+ GC AQ + EEI +    V++V+G +  + +   L+     +   
Sbjct: 69  ----MKANPEGLVVIVGCYAQLKPEEISQIEG-VDLVLGAKEKFNILSYLDDLEKSENEG 123

Query: 148 -----RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
                 + +TD+ +           G Y+      AFL +Q+GCD  CT+C +P  RGI 
Sbjct: 124 IVHSCEIEETDFFI-----------GSYSIGDRTRAFLKVQDGCDYKCTYCTIPLARGIS 172

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK---CTFSDLLYSLSEIKG 259
            S ++  V+  A ++    + EI L G N+  + GKG  G K    TF DL+  L +++G
Sbjct: 173 RSDTIENVLRNATEIAAKDIKEIVLTGVNIGDY-GKGEFGNKRHEHTFLDLISELDKVEG 231

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           + R+R ++  P  + D  I+        +P+ H+P+QSGSD +LK M RR+    Y   +
Sbjct: 232 IERIRISSIEPNLLKDESIELVSKSRSFVPHFHIPLQSGSDDLLKKMKRRYLTKLYNDRV 291

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
           ++IR V PD AI  D IVGFPGET++ F  T + ++++       F YS R  T  ++M 
Sbjct: 292 NKIREVMPDAAIGVDVIVGFPGETEERFMETYNFLNELPITYLHVFTYSERENTEAASMD 351

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG 430
           E V    + +R   L+    +++++F    +G+ + VL E H  + GK+ G
Sbjct: 352 EVVPVTERKKRNKMLRILSEKKKMAFYQTQLGKTLPVLWE-HENKDGKMFG 401


>gi|296445462|ref|ZP_06887419.1| MiaB-like tRNA modifying enzyme YliG [Methylosinus trichosporium
           OB3b]
 gi|296257028|gb|EFH04098.1| MiaB-like tRNA modifying enzyme YliG [Methylosinus trichosporium
           OB3b]
          Length = 452

 Score =  185 bits (470), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 135/453 (29%), Positives = 216/453 (47%), Gaps = 42/453 (9%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC   + DS R+     ++GYE   +   AD++V+NTC   + A  +    +G     
Sbjct: 21  SLGCPKALVDSERILTRLRAEGYELSRTHAGADVVVVNTCGFLDSAKAESLEAIG----- 75

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
             + +KE G   VVV GC+  AE + I  R P V  + GPQ Y  + E +  A   +R  
Sbjct: 76  --AALKENGK--VVVTGCMG-AEPQAITDRFPQVTAITGPQAYESVVEAVHAAAPPRR-- 128

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
                  D F  L + + G        A+L I EGCD  C+FC++P+ RG   SR  ++V
Sbjct: 129 -------DPFLDL-VPEQGVKLTPRHYAYLKISEGCDNSCSFCIIPHLRGPLASRPAAEV 180

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSD---------LLYSLSEIKGLV 261
           + EA KL+  GV E+ ++ Q+ +A+ G+ L   +  F D         L   L  +   V
Sbjct: 181 LREAEKLVKAGVKELLVISQDTSAY-GRDLRYAESAFGDRAVRARFLDLSRELGSLGAWV 239

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           RL Y   +P       + A G +   +PYL +P Q  +  +LK+M R     +  + I  
Sbjct: 240 RLHYVYPYPHVDEVVALMAEGKV---LPYLDIPFQHAAPSVLKTMKRPANEEKTLERIKA 296

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM-LE 380
            R + PD+ + S FIVGFPGET+ DF   +D +D+    +A +F+Y P  G P +++ LE
Sbjct: 297 WRRICPDLTLRSTFIVGFPGETEADFCYLLDWLDEAEIDRAGAFRYEPVAGAPANDLPLE 356

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK------EKGKLVGRSPW 434
            V + VK  R     ++ ++         +G+ ++VLI++ G        KG+    +P 
Sbjct: 357 AVPDEVKETRWKRFMERQQKVSARLLKRKIGKRLQVLIDEPGGGASGALAKGRSKADAPQ 416

Query: 435 LQSV--VLNSKNHNIGDIIKVRITDVKISTLYG 465
           +     V + +    GDI+ V+I       L+G
Sbjct: 417 IDGAVNVASRRPLRAGDIVTVKIERADAYDLHG 449


>gi|258404436|ref|YP_003197178.1| RNA modification enzyme, MiaB family [Desulfohalobium retbaense DSM
           5692]
 gi|257796663|gb|ACV67600.1| RNA modification enzyme, MiaB family [Desulfohalobium retbaense DSM
           5692]
          Length = 431

 Score =  185 bits (470), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 122/415 (29%), Positives = 199/415 (47%), Gaps = 47/415 (11%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           RF + + GC++N Y+S  + + +  +GY   ++ +  + IV+N+C +   A +       
Sbjct: 5   RFALHTLGCKVNQYESQALREAWLQRGYREASTDEVPEWIVVNSCAVTSGAVQDT----- 59

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEE------ILRRSP---IVNVVVGPQTYYRL 136
             R L     +   +  +VV GC AQ   EE      +LR  P     ++ VGP   +  
Sbjct: 60  --RKLVRKLHRNHPEAAIVVTGCAAQVFTEEMAALPGVLRTVPQQAKADLCVGPDALH-- 115

Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
                   F  R  D        F    +     +R RG+   L +Q+GC   CT+C+VP
Sbjct: 116 --------FACREAD-------HFPEFPVT--ASSRARGL---LKVQDGCSHGCTYCIVP 155

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-- 254
           +TRG  ++RS  + + EAR L   G+ E+++ G N+  + G+ L      F D L  L  
Sbjct: 156 HTRGPAVTRSPEKSLAEARHLFRGGLRELSVSGINLRQY-GRDLT-PPLDFWDFLAWLDA 213

Query: 255 ---SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
              +E  G  RLR ++  P +++D  +       ++ P+LHL +QSGS  IL+ M R H 
Sbjct: 214 NLATEWAGRARLRLSSLEPSELTDKALDTLRRCRLVAPHLHLSLQSGSPEILRRMGRGHY 273

Query: 312 AYEY-RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370
             +  R  +DR++ + P   + +DF++GFPGE D  F  T  LV  + +     F YSPR
Sbjct: 274 HPDTIRTFVDRLQEIWPHFGLGADFLLGFPGEDDAAFETTAALVRDLPFTYGHVFPYSPR 333

Query: 371 LGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSF-NDACVGQIIEVLIEKHGKE 424
            GTP +   +QV E +K ER   L+  L +++ +F         I  ++EKH  +
Sbjct: 334 PGTPAATFTDQVAEPIKRERCAILRSILEDKRTAFLQQQAQRDHIPFIVEKHPAQ 388


>gi|167550447|ref|ZP_02344204.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|204929807|ref|ZP_03220828.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|204320801|gb|EDZ06002.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|205324564|gb|EDZ12403.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|322616326|gb|EFY13235.1| ribosomal protein S12 methylthiotransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315996572]
 gi|322619576|gb|EFY16451.1| ribosomal protein S12 methylthiotransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-1]
 gi|322622728|gb|EFY19573.1| ribosomal protein S12 methylthiotransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-3]
 gi|322628640|gb|EFY25427.1| ribosomal protein S12 methylthiotransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-4]
 gi|322631577|gb|EFY28333.1| ribosomal protein S12 methylthiotransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-1]
 gi|322637104|gb|EFY33807.1| ribosomal protein S12 methylthiotransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-2]
 gi|322641696|gb|EFY38332.1| hypothetical protein SEEM954_16890 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322644510|gb|EFY41050.1| ribosomal protein S12 methylthiotransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322648443|gb|EFY44895.1| ribosomal protein S12 methylthiotransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. OH_2009072675]
 gi|322654178|gb|EFY50501.1| ribosomal protein S12 methylthiotransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322658093|gb|EFY54360.1| ribosomal protein S12 methylthiotransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 19N]
 gi|322663567|gb|EFY59769.1| ribosomal protein S12 methylthiotransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 81038-01]
 gi|322670303|gb|EFY66443.1| ribosomal protein S12 methylthiotransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. MD_MDA09249507]
 gi|322671539|gb|EFY67661.1| ribosomal protein S12 methylthiotransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 414877]
 gi|322676895|gb|EFY72962.1| ribosomal protein S12 methylthiotransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 366867]
 gi|322682820|gb|EFY78839.1| ribosomal protein S12 methylthiotransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 413180]
 gi|322686499|gb|EFY82481.1| ribosomal protein S12 methylthiotransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 446600]
 gi|323194604|gb|EFZ79797.1| ribosomal protein S12 methylthiotransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609458-1]
 gi|323196806|gb|EFZ81950.1| ribosomal protein S12 methylthiotransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556150-1]
 gi|323204818|gb|EFZ89813.1| ribosomal protein S12 methylthiotransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609460]
 gi|323208954|gb|EFZ93891.1| ribosomal protein S12 methylthiotransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 507440-20]
 gi|323213939|gb|EFZ98709.1| ribosomal protein S12 methylthiotransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556152]
 gi|323215209|gb|EFZ99954.1| ribosomal protein S12 methylthiotransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB101509-0077]
 gi|323222435|gb|EGA06811.1| ribosomal protein S12 methylthiotransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB102109-0047]
 gi|323227535|gb|EGA11695.1| ribosomal protein S12 methylthiotransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB110209-0055]
 gi|323229887|gb|EGA14010.1| ribosomal protein S12 methylthiotransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB111609-0052]
 gi|323233112|gb|EGA17208.1| ribosomal protein S12 methylthiotransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009083312]
 gi|323240847|gb|EGA24889.1| ribosomal protein S12 methylthiotransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009085258]
 gi|323243164|gb|EGA27184.1| ribosomal protein S12 methylthiotransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315731156]
 gi|323248705|gb|EGA32633.1| ribosomal protein S12 methylthiotransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2009159199]
 gi|323251707|gb|EGA35574.1| ribosomal protein S12 methylthiotransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008282]
 gi|323257521|gb|EGA41209.1| ribosomal protein S12 methylthiotransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008283]
 gi|323261478|gb|EGA45059.1| ribosomal protein S12 methylthiotransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008284]
 gi|323267909|gb|EGA51388.1| ribosomal protein S12 methylthiotransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008285]
 gi|323272024|gb|EGA55439.1| ribosomal protein S12 methylthiotransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008287]
          Length = 441

 Score =  185 bits (470), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 140/462 (30%), Positives = 234/462 (50%), Gaps = 45/462 (9%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  FV S GC  N+ DS R+     ++GY+ V   DDAD++++NTC   + A ++    
Sbjct: 8   PKIGFV-SLGCPKNLVDSERILTELRTEGYDVVPRYDDADMVIVNTCGFIDSAVQESLEA 66

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G   N       E G   V+V GC+   E ++I    P V  + GP +Y ++ + +   
Sbjct: 67  IGEALN-------ENGK--VIVTGCLGAKE-DQIREVHPKVLEITGPHSYEQVLQHVHH- 115

Query: 144 RFGKRVVDTDYSVEDKFER-LSIV-DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
                     Y  + K    LS+V + G        A+L I EGC+  CTFC++P  RG 
Sbjct: 116 ----------YVPKPKHNPFLSLVPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGD 165

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYS 253
            +SR +  V+ EA++L+D GV EI ++ Q+ +A+      R    +GE  K +   L   
Sbjct: 166 LVSRPIGDVLSEAKRLVDAGVKEILVISQDTSAYGVDVKHRTGFHNGEPVKTSMVSLCEQ 225

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
           LS++    RL Y   +P       + A G +   +PYL +P+Q  S RILK M R  +  
Sbjct: 226 LSKLGVWTRLHYVYPYPHVDDVIPLMAEGKI---LPYLDIPLQHASPRILKLMKRPGSVD 282

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
                I + R + P++ + S FIVGFPGET++DF+  +D + +    +   FKYSP  G 
Sbjct: 283 RQLARIKQWREICPELTLRSTFIVGFPGETEEDFQMLLDFLKEARLDRVGCFKYSPVEGA 342

Query: 374 PGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKL 428
             +++ +QV E VK E   R + LQ+++  +++      VG+ I V++++  +E   G+ 
Sbjct: 343 GANDLPDQVPEEVKEERWNRFMQLQQQISAERLQEK---VGREILVIVDEVDEEGAIGRS 399

Query: 429 VGRSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468
           +  +P +   V  +   N+  GDI++V++ +     L+G  V
Sbjct: 400 MADAPEIDGAVYLNGETNVKPGDIVRVKVENADEYDLWGSRV 441


>gi|291534092|emb|CBL07205.1| 2-methylthioadenine synthetase [Megamonas hypermegale ART12/1]
          Length = 278

 Score =  185 bits (470), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 100/257 (38%), Positives = 151/257 (58%), Gaps = 18/257 (7%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           + +  YGCQMN  D  R        GY+    ++DAD+I++NTC +RE A +K+Y  +G 
Sbjct: 12  YKILPYGCQMNFSDGERFAGQLERMGYKPAEKLEDADIIIINTCCVRESAEKKIYGKIGE 71

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER--AR 144
           I++LK  +     DL++ + GC+AQ +G+ I +++  V+ V+G    Y LP +LE   A 
Sbjct: 72  IKHLKQQK----PDLILGITGCMAQKDGDAIFKKASHVDFVLGTNKMYDLPAVLEEIFAS 127

Query: 145 FGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            G  V +  DY +    E              + AF+ I  GC+ FCT+C+VPY RG E 
Sbjct: 128 RGHIVKLAGDYDMPPNVEPA--------ENNSLFAFIPIMYGCNNFCTYCIVPYVRGRER 179

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR+  ++V E  KL  NGV E+TLLGQNVN++   G D +   F+DLL  + +I+G+ R+
Sbjct: 180 SRAPQEIVAEITKLAQNGVKEVTLLGQNVNSY---GKDRDDADFADLLAMVDKIEGIERI 236

Query: 264 RYTTSHPRDMSDCLIKA 280
           RY TSHPRD++D +I+ 
Sbjct: 237 RYMTSHPRDLTDKVIET 253


>gi|295109889|emb|CBL23842.1| SSU ribosomal protein S12P methylthiotransferase [Ruminococcus
           obeum A2-162]
          Length = 445

 Score =  185 bits (470), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 142/453 (31%), Positives = 223/453 (49%), Gaps = 34/453 (7%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ DS  M  +  + G+E V+S ++AD IV+NTC     A E+  + +  +   
Sbjct: 7   SLGCDKNLADSEEMLGLLTANGHEIVDSEEEADAIVINTCCFIHDAKEESVNTILEMAEY 66

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG---K 147
           K S    G    ++V GC+AQ   EEI +  P V+ V+G  +Y  + + L   + G   +
Sbjct: 67  KKS----GTCKALIVTGCMAQRYKEEITQEIPEVDAVLGTTSYGDIVKALNEVQAGNVFQ 122

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
              D +   ED   R+ I  GG+        +L I EGCDK CT+C++P  RG   S   
Sbjct: 123 EFRDINELPEDCGHRV-ITTGGH------FGYLKIAEGCDKHCTYCIIPSLRGKFRSVPE 175

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
            +++ +A  +   GV E+ L+ Q    + G  L G+K T   LL  L +I+G+  +R   
Sbjct: 176 ERLLKQAEYMASQGVRELILVAQETTVY-GTDLYGKK-TLHLLLKKLCQIRGIRWIRVLY 233

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
            +P ++ D LI+       +  YL LP+Q  SD+IL+ M RR +  +   II ++R   P
Sbjct: 234 CYPEEIYDELIQVMKAEPKICHYLDLPIQHASDKILRRMGRRTSKQQLIDIITKLRREIP 293

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
           DI + +  I GFPGET++D +  M+ VD++ + +   F YSP  GTP   M  QV E VK
Sbjct: 294 DIVLRTSLITGFPGETEEDHQELMEFVDEMEFDRLGVFTYSPEEGTPAETMEGQVPEEVK 353

Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHN- 446
             R   + +  +E  +   +  +GQ + V+IE      GK++G S ++     ++   + 
Sbjct: 354 EARRDEIMELQQEISLDKGNDRIGQEVLVMIE------GKVLGESAYIGRTYGDAPKVDG 407

Query: 447 -----------IGDIIKVRITDVKISTLYGELV 468
                       GD  KV +T      L GEL 
Sbjct: 408 YIFVQTGELLVTGDFAKVTVTGALEYDLIGELT 440


>gi|333009569|gb|EGK29021.1| RNA modification enzyme, MiaB family protein [Shigella flexneri
           K-272]
 gi|333020497|gb|EGK39760.1| RNA modification enzyme, MiaB family protein [Shigella flexneri
           K-227]
          Length = 441

 Score =  185 bits (470), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 142/462 (30%), Positives = 233/462 (50%), Gaps = 45/462 (9%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  FV S GC  N+ DS R+     ++GY+ V S DDAD++++NTC   + A ++    
Sbjct: 8   PKIGFV-SLGCPKNLVDSERILTELRTEGYDVVPSYDDADMVIVNTCGFIDSAVQESLEA 66

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G   N       E G   V+V GC+   E ++I    P V  + GP +Y ++ E +   
Sbjct: 67  IGEALN-------ENGK--VIVTGCLGAKE-DQIREVHPKVLEITGPHSYEQVLEHVHH- 115

Query: 144 RFGKRVVDTDYSVEDKFER-LSIV-DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
                     Y  + K    LS+V + G        A+L I EGC+  CTFC++P  RG 
Sbjct: 116 ----------YVPKPKHNPFLSLVPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGD 165

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYS 253
            +SR + +V+ EA++L+D GV EI ++ Q+ +A+      R    +GE  K +   L   
Sbjct: 166 LVSRPIGEVLSEAKRLVDAGVKEILVISQDTSAYGVDVKHRTGFHNGEPVKTSMVSLCEQ 225

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
           LS++    RL Y   +P       + A G +   +PYL +P+Q  S RILK M R  +  
Sbjct: 226 LSKLGIWTRLHYVYPYPHVDDVIPLMAEGKI---LPYLDIPLQHASPRILKLMKRPGSVD 282

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
                I + R + P++ + S FIVGFPGET++DF+  +D + +    +   FKYSP  G 
Sbjct: 283 RQLARIKQWREICPELTLRSTFIVGFPGETEEDFQMLLDFLKEARLDRVGCFKYSPVEGA 342

Query: 374 PGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKL 428
             + + +QV E VK E   R + LQ+++  +++      V + I V+I++  +E   G+ 
Sbjct: 343 DANALPDQVPEEVKEERWNRFMQLQQQISAERLQEK---VDREILVIIDEVDEEGAIGRS 399

Query: 429 VGRSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468
           +  +P +   V  +   N+  GDI++V++       L+G  V
Sbjct: 400 MADAPEIDGAVYLNGETNVKPGDILRVKVEHADEYDLWGSRV 441


>gi|311109259|ref|YP_003982112.1| RNA modification enzyme, MiaB family protein [Achromobacter
           xylosoxidans A8]
 gi|310763948|gb|ADP19397.1| RNA modification enzyme, MiaB family protein [Achromobacter
           xylosoxidans A8]
          Length = 477

 Score =  185 bits (470), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 147/471 (31%), Positives = 230/471 (48%), Gaps = 60/471 (12%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
            P+  FV S GC   + DS R+     ++GYE     DDAD++V+NTC   + A  +   
Sbjct: 42  TPRVGFV-SLGCPKALVDSERILTQLRTEGYEVTPEYDDADVVVVNTCGFIDSAKAESLE 100

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRR-SPIVNVVVGPQTYYRLPELLE 141
            +G         + E G   V+V GC+   E   ++R   P V  V GPQ Y  +   + 
Sbjct: 101 AIGEA-------LAENGK--VIVTGCMGVEES--VIRDVHPSVLAVTGPQQYEEVVRAVH 149

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
            A   K+         D    L +V   G        A+L I EGC+  C+FC++P  RG
Sbjct: 150 EAAPPKK---------DHNPYLDLVPPQGIKLTPRHYAYLKISEGCNHRCSFCIIPSMRG 200

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSD 249
             +SR +  V+ EA +L+  GV E+ ++ Q+ +A           W G+ +   K   ++
Sbjct: 201 NLVSRPVGDVLSEAERLVKAGVKELLVISQDTSAYGVDVKYRSGFWNGRPV---KTRMTE 257

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
           L  +LSE+    RL Y   +P       + A G +   +PYL +P Q  S RILK+M R 
Sbjct: 258 LCMALSEMGVWTRLHYVYPYPHVDEVIPLMAEGKI---LPYLDIPFQHASPRILKAMKR- 313

Query: 310 HTAYEYRQI--IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
             A+E + +  I R R + PD+ I S FIVGFPGET++DF+  +D + +    +   F+Y
Sbjct: 314 -PAFEDKTLARIKRWREICPDLTIRSTFIVGFPGETEEDFQYLLDWMQEAQLDRVGCFQY 372

Query: 368 SPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDA----CVGQIIEVLIEKHGK 423
           SP  G P + +   V ++VK ER     ++  E Q S + A     VG+ I+VLI++  +
Sbjct: 373 SPVEGAPANLLDNPVPDDVKQERW----ERFMELQQSISTARLAKKVGREIDVLIDEVDE 428

Query: 424 EKGKLVGRS----PWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468
           +    VGRS    P +   V  S +  +  GD+++VR+TD     L+ + +
Sbjct: 429 DGA--VGRSSADAPEIDGCVYVSSDKPLKAGDLVRVRVTDSDEYDLWADAI 477


>gi|156934668|ref|YP_001438584.1| ribosomal protein S12 methylthiotransferase [Cronobacter sakazakii
           ATCC BAA-894]
 gi|238065354|sp|A7MF19|RIMO_ENTS8 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|156532922|gb|ABU77748.1| hypothetical protein ESA_02503 [Cronobacter sakazakii ATCC BAA-894]
          Length = 441

 Score =  185 bits (470), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 140/465 (30%), Positives = 234/465 (50%), Gaps = 51/465 (10%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  FV S GC  N+ DS R+     ++GY+ V   DDAD++++NTC   + A ++    
Sbjct: 8   PKIGFV-SLGCPKNLVDSERILTELRTEGYDVVPRYDDADMVIVNTCGFIDSAVQESLEA 66

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G   N       E G   V+V GC+   E ++I    P V  + GP +Y ++ + +   
Sbjct: 67  IGEALN-------ENGK--VIVTGCLGAKE-DQIREVHPKVLEITGPHSYEQVLQHVHH- 115

Query: 144 RFGKRVVDTDYSVEDKFER-LSIV-DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
                     Y  + K    LS+V + G        A+L I EGC+  CTFC++P  RG 
Sbjct: 116 ----------YVPKPKHNPFLSLVPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGD 165

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDL 250
             SR +  V+ EA++L++ GV E+ ++ Q+ +A           W G  +   K +   L
Sbjct: 166 LDSRPIGDVLAEAKRLVEAGVKELLVISQDTSAYGVDVKHRTGFWNGSPV---KTSMVSL 222

Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
              L+++   VRL Y   +P       + A G +   +PYL +P+Q  S RILK M R  
Sbjct: 223 CEQLAKLGVWVRLHYVYPYPHVDDVIPLMAEGKI---LPYLDIPLQHASPRILKLMKRPG 279

Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370
           +       I + R + P++ + S FIVGFPGET+DDF+  +D + +    +   FKYSP 
Sbjct: 280 SVDRQLARIKQWREICPELTLRSTFIVGFPGETEDDFQMLLDFLKEARLDRVGCFKYSPV 339

Query: 371 LGTPGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-- 425
            G   +++ +QV E VK E   R + LQ+++  +++      VG+ I V+I++  +E   
Sbjct: 340 EGATANDLPDQVPEEVKEERWNRFMALQQQISAERLQEK---VGREILVIIDEVDEEGAI 396

Query: 426 GKLVGRSPWLQ-SVVLNSKNH-NIGDIIKVRITDVKISTLYGELV 468
           G+ +  +P +  +V LN +     GD+++V++ +     L+G LV
Sbjct: 397 GRSMADAPEIDGAVYLNGETKLKPGDVVRVKVENADEYDLWGSLV 441


>gi|238913831|ref|ZP_04657668.1| hypothetical protein SentesTe_22240 [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
          Length = 441

 Score =  185 bits (470), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 140/462 (30%), Positives = 233/462 (50%), Gaps = 45/462 (9%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  FV S GC  N+ DS R+     ++GY+ V   DDAD++++NTC   + A ++    
Sbjct: 8   PKIGFV-SLGCPKNLVDSERILTELRTEGYDVVPRYDDADMVIVNTCGFIDSAVQESLEA 66

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G   N       E G   V+V GC+   E ++I    P V  + GP +Y ++ + +   
Sbjct: 67  IGEALN-------ENGK--VIVTGCLGAKE-DQIREVHPKVLEITGPHSYEQVLQHVHH- 115

Query: 144 RFGKRVVDTDYSVEDKFER-LSIV-DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
                     Y  + K    LS+V + G        A+L I EGC+  CTFC++P  RG 
Sbjct: 116 ----------YVPKPKHNPFLSLVPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGD 165

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYS 253
            +SR +  V+ EA++L+D GV EI ++ Q+ +A+      R    +GE  K +   L   
Sbjct: 166 LVSRPIGDVLSEAKRLVDAGVKEILVISQDTSAYGVDVKHRTGFHNGEPVKTSMVSLCEQ 225

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
           LS++    RL Y   +P       + A G +   +PYL +P+Q  S RILK M R  +  
Sbjct: 226 LSKLGVWTRLHYVYPYPHVDDVIPLMAEGKI---LPYLDIPLQHASPRILKLMKRPGSVD 282

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
                I + R + P++ + S FIVGFPGET++DF+  +D + +    +   FKYSP  G 
Sbjct: 283 RQLARIKQWREICPELTLRSTFIVGFPGETEEDFQMLLDFLKEARLDRVGCFKYSPVEGA 342

Query: 374 PGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKL 428
             + + +QV E VK E   R + LQ+++  +++      VG+ I V++++  +E   G+ 
Sbjct: 343 GANELPDQVPEEVKVERWNRFMQLQQQISAERLQEK---VGREILVIVDEVDEEGAIGRS 399

Query: 429 VGRSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468
           +  +P +   V  +   N+  GDI++V++ +     L+G  V
Sbjct: 400 MADAPEIDGAVYLNGETNVKPGDIVRVKVENADEYDLWGSRV 441


>gi|332655310|ref|ZP_08421050.1| 2-methylthioadenine synthetase [Ruminococcaceae bacterium D16]
 gi|332515815|gb|EGJ45425.1| 2-methylthioadenine synthetase [Ruminococcaceae bacterium D16]
          Length = 451

 Score =  185 bits (470), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 136/465 (29%), Positives = 237/465 (50%), Gaps = 44/465 (9%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           ++P +    S GC  N+ ++ +M  +    G+      + AD+ VLNTC   E A  +  
Sbjct: 10  MMPYKIAFVSLGCAKNLVNTEQMMALCRKAGHTVTGEPEGADVAVLNTCGFIESAKSEA- 68

Query: 82  SFLGRIRN-LKNSRIKEGGDLL-VVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL 139
                I N L+ +++K+ G L  ++VAGC+ Q   ++I +  P V+ ++G  +Y  +   
Sbjct: 69  -----IENILELAQLKQDGKLKKLLVAGCLTQRYPDDIRKELPEVDGMLGTGSYTDVVTA 123

Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGV------TAFLTIQEGCDKFCTFC 193
           +E    G+R         + FER   +D  Y+    +      TA+L I EGC   C FC
Sbjct: 124 VEELMAGER--------PEHFER---IDRAYDDGERMVTTPPYTAYLKIAEGCSNGCAFC 172

Query: 194 VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS 253
           ++P  RG   SR++  +++EA+ L D+GV E+ ++ Q++  + G  L G+  T + LL  
Sbjct: 173 IIPKLRGRYRSRTMDHLLEEAKSLADSGVKELIVIAQDITRY-GSDL-GDGTTLAGLLKE 230

Query: 254 LSEIK-GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
           L ++    +RL Y   +P  ++D L++       ++ YL +P+Q  +D ILK+M RR+T 
Sbjct: 231 LCKLPFHWIRLHYL--YPEAITDELVEVIASEKKIVHYLDIPIQHCNDGILKAMRRRNTK 288

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
            E  ++  R+R   PD+ I +  I G PGE + +F    + + +    +A  F++SP  G
Sbjct: 289 VELEELFARLRKAIPDVVIRTSLICGLPGEGEAEFEELCEFLKEQKLQRAGVFQFSPEEG 348

Query: 373 TPGSNMLEQVDENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV 429
           T    M  QVD +V A R   ++ LQ ++ ++   +N+  +G ++EVL E    + G  V
Sbjct: 349 TLAEKMENQVDPDVAARRVELVVDLQSRIMDE---YNEERLGTVMEVLCEGFDSQAGCFV 405

Query: 430 GRSPWLQSVVLNSKNH-------NIGDIIKVRITDVKISTLYGEL 467
           GR+ +  SV ++   +         G+ + VRIT V    L GE+
Sbjct: 406 GRT-YADSVEIDGHVYFTAAGLVPAGEFVHVRITGVSDGDLTGEI 449


>gi|297527331|ref|YP_003669355.1| RNA modification enzyme, MiaB family [Staphylothermus hellenicus
           DSM 12710]
 gi|297256247|gb|ADI32456.1| RNA modification enzyme, MiaB family [Staphylothermus hellenicus
           DSM 12710]
          Length = 429

 Score =  185 bits (470), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 134/456 (29%), Positives = 242/456 (53%), Gaps = 39/456 (8%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + +R ++++YGC +N  D   M+ +  S+G+  VN + +AD I++NTC +R     K+  
Sbjct: 1   MARRVYIETYGCALNRGDEYIMKTVLVSRGHRLVNEIAEADTIIINTCTVRYDTELKM-- 58

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            + RI+ L   +I    +  ++VAGC+A+A+  +I + +P  ++V  PQ   ++      
Sbjct: 59  -IKRIKEL--YKIASEQNKKLIVAGCMAKAQPYKIHKIAPRASLV-SPQNASKI------ 108

Query: 143 ARFGKRVVDTDYSV-EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
                  V++D  V   K ER   + G +  K+   A+L IQEGC   C+FC+V   R  
Sbjct: 109 ----WIAVESDKQVFLLKGERDRNILGTHVDKQ--IAYLPIQEGCLGNCSFCIVKNARRQ 162

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
            +S  ++++ +   +L+  GV EI L GQ+  ++ G  L G K     LL  L  IKG  
Sbjct: 163 LVSYPINKIKNTVEELVGKGVVEIELTGQDTASY-GLDLYG-KQKLPHLLEELDRIKGNF 220

Query: 262 RLRYTTSHPRDMSDCL--------IKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
            +R    +P  +++ L          AH     +  +LH+P+QSGSD++L+ M R++T  
Sbjct: 221 MIRIGMMNPDTLANILDELVEIIKYSAH-----IYRFLHIPLQSGSDKVLRVMKRKYTVD 275

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
           EYR+II  +R   P+I+I++D IVG PGE ++DF  T+ ++ ++ + +     YS R  T
Sbjct: 276 EYREIIKTLRKKIPEISIATDIIVGHPGEEEEDFEQTLSIIKELKFERIHPAVYSIRPNT 335

Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS- 432
             ++ L QV  + K  R+L L K + +  +  +   +G+I++  + ++       +GR+ 
Sbjct: 336 YSAS-LRQVPTSDKKIRMLRLLKIIEDVGLEIHRKYLGKILDTFVTEYS---NTWIGRTL 391

Query: 433 PWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            ++  ++ ++   N GD +K +IT+     L G +V
Sbjct: 392 NYIPVIIFSNNTLNFGDHVKTQITNATFYDLRGVIV 427


>gi|228472998|ref|ZP_04057755.1| conserved hypothetical protein [Capnocytophaga gingivalis ATCC
           33624]
 gi|228275580|gb|EEK14357.1| conserved hypothetical protein [Capnocytophaga gingivalis ATCC
           33624]
          Length = 438

 Score =  185 bits (470), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 124/435 (28%), Positives = 218/435 (50%), Gaps = 34/435 (7%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +R    + GC++N  ++  +   F ++G+++V+  + AD+ V+NTC + E A ++     
Sbjct: 3   KRVAFYTLGCKLNFAETATIARSFENEGFDKVDFEEPADIYVINTCSVTENADKQ----- 57

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER-A 143
              R +    +K   +  +   GC AQ + E+++     V++V+G +  + + + ++   
Sbjct: 58  --FRQIVRKALKHNENAFIAAVGCYAQLKPEDLIAVDG-VDLVLGAKEKFNITQYIDDLT 114

Query: 144 RFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           +  K ++   D +  D +       G Y+      AFL IQ+GCD  CT+C +P  RGI 
Sbjct: 115 KLNKGQIHSCDINEADFYV------GSYSIGDRTRAFLKIQDGCDYKCTYCTIPMARGIS 168

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK---CTFSDLLYSLSEIKG 259
            S ++  ++  A+K+ +N + EI L G N+  + GKG  G K    TF +L+ +L  ++G
Sbjct: 169 RSDTIENILQNAKKISENNIKEIVLTGVNIGDY-GKGEFGNKKHEHTFLELIQALDTVEG 227

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           + RLR ++  P  + D  I         +P+ H+P+QSGS+ ILK M RR+    Y   +
Sbjct: 228 IERLRISSIEPNLLKDETIAFVAQSRSFVPHFHIPLQSGSNDILKKMKRRYLRELYEDRV 287

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            +IR + PD  I  D IVGFPGETD+ F  T   ++++  +    F YS R  T    M 
Sbjct: 288 AKIRELMPDACIGVDVIVGFPGETDEHFLETYHFLNQLDISYLHVFTYSERANTEAVEME 347

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-------HGKEKGKLVGRS 432
             V   V+A+R   L+    +++  F +  +G   +V+ E        HG  +  +  ++
Sbjct: 348 GVVPSEVRAKRSRMLRGLSAKKRHHFYEQQLGSTHQVIFESDNKDGFMHGFTENYVKVKT 407

Query: 433 PW-------LQSVVL 440
           P+       LQ VVL
Sbjct: 408 PFAPELVNTLQKVVL 422


>gi|220932034|ref|YP_002508942.1| MiaB-like tRNA modifying enzyme [Halothermothrix orenii H 168]
 gi|219993344|gb|ACL69947.1| MiaB-like tRNA modifying enzyme [Halothermothrix orenii H 168]
          Length = 442

 Score =  185 bits (470), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 136/451 (30%), Positives = 229/451 (50%), Gaps = 33/451 (7%)

Query: 31  SYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTC-HIREKAAEKVYSFL--GR 86
           S GC  N  DS  M     + + +  V+ ++ AD+IV+NTC  I++   E + + L  G+
Sbjct: 8   SLGCPKNQVDSEIMLGFLSNDKNFTEVDDLELADVIVINTCGFIQDAKEESIETILEAGQ 67

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
            +++ N +        ++V GC+ Q   EEIL   P V+ ++G   + ++   +++   G
Sbjct: 68  YKSVGNCK-------ALIVTGCLTQRYREEILENMPEVDAILGTGNFDKIIPTIKKVLKG 120

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           +RV +            +  D     +    A++ I EGCD  CT+C +PY RG   SR 
Sbjct: 121 QRVSNIGNPT------FNYNDVPRKIRTSHFAYVKIAEGCDNRCTYCSIPYIRGKLTSRP 174

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
           +  + +E  KL   G+ EI L+ Q+   + GK + G K     LL  L EI  +  +R  
Sbjct: 175 IEDIYNEVVKLGQQGIKEIILVAQDTTQY-GKDIYG-KSMLLPLLKELVEIDSIKWIRLL 232

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
             +P  ++D L+    + + +  YL LP+Q  S++I + MNR+ +  E   +I R+R + 
Sbjct: 233 YCYPERITDELLFFIAENNKICNYLDLPIQHSSNKIRRLMNRKGSREELINLIKRVRELV 292

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           PDI I +  IVGFPGETD+DF    + V +I + +   FKYS    TP ++   Q+ E +
Sbjct: 293 PDIVIRTSLIVGFPGETDEDFNDLFNFVKEIKFDRLGVFKYSREENTPAASFPGQISEKI 352

Query: 387 KAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVV 439
           K ER   ++ +Q+K+   +   N   +G+ ++VLI++   E    +GR+    P + + V
Sbjct: 353 KDERYNKIMEVQQKISRNK---NQERIGEKVKVLIDELTDEMA--IGRTQYDAPEIDNQV 407

Query: 440 LNSKNHNI--GDIIKVRITDVKISTLYGELV 468
             S N  I  GD+I  R+T+     L GE +
Sbjct: 408 YVSCNGKISEGDMILCRVTEAYEYDLLGECI 438


>gi|224582664|ref|YP_002636462.1| ribosomal protein S12 methylthiotransferase [Salmonella enterica
           subsp. enterica serovar Paratyphi C strain RKS4594]
 gi|224467191|gb|ACN45021.1| hypothetical protein SPC_0849 [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
          Length = 441

 Score =  185 bits (469), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 141/462 (30%), Positives = 233/462 (50%), Gaps = 45/462 (9%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  FV S GC  N+ DS R+     ++GY+ V   DDAD++++NTC   + A ++    
Sbjct: 8   PKIGFV-SLGCPKNLVDSERILTELRTEGYDVVPRYDDADMVIVNTCGFIDSAVQESLEA 66

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G   N       E G   VVV GC+   E ++I    P V  + GP +Y ++ + +   
Sbjct: 67  IGEALN-------ENGK--VVVTGCLGAKE-DQIREVHPKVLEITGPHSYEQVLQHVHH- 115

Query: 144 RFGKRVVDTDYSVEDKFER-LSIV-DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
                     Y  + K    LS+V + G        A+L I EGC+  CTFC++P  RG 
Sbjct: 116 ----------YVPKPKHNPFLSLVPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGD 165

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYS 253
            +SR +  V+ EA++L+D GV EI ++ Q+ +A+      R    +GE  K +   L   
Sbjct: 166 LVSRPIGDVLSEAKRLVDAGVKEILVISQDTSAYGVDVKHRTGFHNGEPVKTSMVSLCEQ 225

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
           LS++    RL Y   +P       + A G +   +PYL +P+Q  S RILK M R  +  
Sbjct: 226 LSKLGVWTRLHYVYPYPHVDDVIPLMAEGKI---LPYLDIPLQHASPRILKLMKRPGSVD 282

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
                I + R + P++ + S FIVGFPGET++DF+  +D + +    +   FKYSP  G 
Sbjct: 283 RQLARIKQWREICPELTLRSTFIVGFPGETEEDFQMLLDFLKEARLDRVGCFKYSPVEGA 342

Query: 374 PGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKL 428
             + + +QV E VK E   R + LQ+++  +++      VG+ I V++++  +E   G+ 
Sbjct: 343 GANELPDQVPEEVKEERWNRFMQLQQQISAERLQEK---VGREILVIVDEVDEEGAIGRS 399

Query: 429 VGRSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468
           +  +P +   V  +   N+  GDI++V++ +     L+G  V
Sbjct: 400 MADAPEIDGAVYLNGETNVKPGDIVRVKVENADEYDLWGSRV 441


>gi|253580717|ref|ZP_04857981.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848088|gb|EES76054.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 422

 Score =  185 bits (469), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 122/436 (27%), Positives = 235/436 (53%), Gaps = 28/436 (6%)

Query: 44  MEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLV 103
           M+ +    GYE V     AD+ ++NTC +   A  K    L + + +         D +V
Sbjct: 1   MQQLLEEAGYEIVPFEPGADVYLINTCTVTNIADRKSRQMLHKAKKM-------NPDAIV 53

Query: 104 VVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE----RARFGKRVVDTDYSVEDK 159
           + AGC  Q + E  L +   V++++G      + ++LE    +    K V+  + + E  
Sbjct: 54  IAAGCYVQTD-EGKLDKDEAVDLILGNNQKGNIVQVLEEYEQQHTKQKHVLKINQTKE-- 110

Query: 160 FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLID 219
           +E L+I     +    V A++ +Q+GC++FCT+C++PY RG   SR ++ V+DE   L  
Sbjct: 111 YEELAID----HTAEHVRAYIKVQDGCNQFCTYCIIPYARGRVRSRKIAHVMDEVHALAA 166

Query: 220 NGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIK 279
            G  E+ L G +++++       EK T   L+ ++ E++G+ R+R  +  P  +++  ++
Sbjct: 167 KGYKEVVLTGIHLSSYGVDFPAEEKETLLSLIRAVHEVEGIERIRLGSLEPGIITEEFVQ 226

Query: 280 AHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGF 339
           +   L  + P+ HL +QSG D  L+ MNRR+ + EY +    +R    + A+++D IVGF
Sbjct: 227 SIAALPKMCPHFHLSLQSGCDTTLERMNRRYRSAEYAEKCGLLRKYLGNPALTTDVIVGF 286

Query: 340 PGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM---LEQVDENVKAERLLCLQK 396
           P ET++DF+ + D V+ I + +   FKYS R GT  + M   L +  + V+++++L L +
Sbjct: 287 PMETEEDFQDSYDFVESIHFYETHIFKYSRRHGTKAAAMSGQLTEAQKAVRSDKMLALNE 346

Query: 397 KLREQQVSFNDACVGQIIEVLIEKHGKEKGK--LVGRS-PWLQSVVLNSKNHNIGDIIKV 453
           +  ++   +  + +G  ++VL+E+  +  G+   +G S  ++++ V    N+++ DII V
Sbjct: 347 QHAKE---YEKSMLGGELKVLLEEEVEINGEQWYIGHSMEYIKTAVKKQDNYSVNDIITV 403

Query: 454 RITD-VKISTLYGELV 468
           +  + ++  TL GE++
Sbjct: 404 KAEEFLEEHTLTGEVL 419


>gi|327400612|ref|YP_004341451.1| MiaB family RNA modification protein [Archaeoglobus veneficus SNP6]
 gi|327316120|gb|AEA46736.1| RNA modification enzyme, MiaB family [Archaeoglobus veneficus SNP6]
          Length = 417

 Score =  185 bits (469), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 134/448 (29%), Positives = 230/448 (51%), Gaps = 42/448 (9%)

Query: 26  RFFVKSYGCQMNVYDS--LRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           R  +++YGC MN  DS  +R E    S+ +E ++S++DAD++V+N+C + +    K+ + 
Sbjct: 2   RVAIETYGCTMNQADSDIIRAE---VSREFE-LSSVEDADVVVINSCGVIDYTERKILNR 57

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
             ++R +  +         VV+AGC+ +   ++++    + N  + P   +R+ E+++ A
Sbjct: 58  ARQLRQMGKT---------VVMAGCLPRIAKKKVME---VANAAISPDNVHRIDEVIKAA 105

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             G ++   D S  DK            R  G  A ++I EGC   CTFC   + RG   
Sbjct: 106 VSGNKLFLLDKSEIDK------TRCEKQRMAGGIAIVSIAEGCTGRCTFCATRFARGRLR 159

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           S S   +V+E +K +  G  EI L  Q+  A+ G  +        DLL  +S I+G+ R+
Sbjct: 160 SFSPDGIVEEIKKAVRAGYVEIQLTSQDTGAY-GHDIG---TNLPDLLEKISAIEGMFRV 215

Query: 264 RYTTSHPR---DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
           R    +PR    M D L+ A  + + +  +LHLPVQSG +++L+ M R H   EY +++ 
Sbjct: 216 RVGMMNPRHAYSMLDDLLNAF-ESEKIYKFLHLPVQSGDEKVLRDMGRDHGVEEYEEVVS 274

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
             R    D+ IS+D IVGFP E+++ F  ++DLV +         +YSPR GTP   + +
Sbjct: 275 AFRKRFDDVMISTDIIVGFPTESEEAFYKSLDLVRRTRPDLVNVTRYSPRKGTPAFRLRD 334

Query: 381 QVD--ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSV 438
             D  +  ++  +  L  +++E++   N   VG+  +V+I K       L+ R+   + V
Sbjct: 335 MPDWIKKDRSRAVTRLANRIKEKK---NSTFVGKTFDVVITKRS---NGLLSRTNAYRPV 388

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGE 466
           +L  K   IG+  +VR+TD   + L GE
Sbjct: 389 IL--KQGEIGEFCRVRVTDYTPTHLIGE 414


>gi|159902657|ref|YP_001550001.1| Fe-S oxidoreductase [Prochlorococcus marinus str. MIT 9211]
 gi|238066463|sp|A9BCV9|RIMO_PROM4 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|159887833|gb|ABX08047.1| possible Fe-S oxidoreductase [Prochlorococcus marinus str. MIT
           9211]
          Length = 462

 Score =  185 bits (469), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 132/454 (29%), Positives = 226/454 (49%), Gaps = 44/454 (9%)

Query: 33  GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEK-VYSFLGRIRNLK 91
           GC+ N+ D+  M  +  S+GY   ++ DDA+++V+NTC   E+A E+ V + +G     K
Sbjct: 30  GCEKNLVDTEHMMGLLASEGYGVSSNTDDAEVVVVNTCSFIEQAREESVRALVGLADQGK 89

Query: 92  NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVD 151
                      +++AGC+AQ    E+L   P    +VG   Y  + E+L+R R G+RV  
Sbjct: 90  E----------IIIAGCLAQHFKSELLESIPEAKAIVGTGDYQNIIEVLQRVRQGERV-- 137

Query: 152 TDYSVEDKFERLSIVDGGYNRKRGV---TAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
              S   KF    + D    R R      ++L + EGC+  C FC++P  RG + SRS+ 
Sbjct: 138 NQVSENPKF----VGDENLPRYRTTGRFVSYLKVAEGCNYRCAFCIIPTLRGNQRSRSVQ 193

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK-GLVRLRYTT 267
            +V+EA +L   G+ E+ L+ Q +    G  L G +   +DLL +LS +    +R+ Y  
Sbjct: 194 SIVNEANQLAKEGIQELILISQ-ITTNYGMDLYG-RPYLADLLRALSHVDIPWIRIHY-- 249

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
           ++P  ++  ++ A+ ++  ++PY  LP+Q     +L++MNR   +     +++RI+   P
Sbjct: 250 AYPTGLTPEVVLAYKEVPNVLPYFDLPLQHSHPDVLRAMNRPWQSDVSSALLNRIKEQLP 309

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD---E 384
           +  + +  IVGFPGET   F      V+   +     F +S   GT  + +  QV     
Sbjct: 310 EAVMRTTLIVGFPGETKAQFDHLCAFVENQKFDHVGVFAFSREEGTEAAKLPNQVPFEIA 369

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQ-------- 436
             + ++L+ +Q+ +   +   N A +GQ ++VLIE+     G+L+GRS            
Sbjct: 370 QARKDKLVAIQQPISAAK---NQALIGQTVDVLIEREDLATGELIGRSARFAPEVDGEVR 426

Query: 437 ---SVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
              S VL +  H  G I+   IT  ++  L GE+
Sbjct: 427 LRPSQVLFNDLH--GKIVPALITGSELYDLTGEI 458


>gi|284162243|ref|YP_003400866.1| MiaB-like tRNA modifying enzyme [Archaeoglobus profundus DSM 5631]
 gi|284012240|gb|ADB58193.1| MiaB-like tRNA modifying enzyme [Archaeoglobus profundus DSM 5631]
          Length = 423

 Score =  185 bits (469), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 136/443 (30%), Positives = 232/443 (52%), Gaps = 27/443 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + ++++YGC MN  DS  M  +  ++ +E V+S D+AD++V+N+C + +    K+   L 
Sbjct: 3   KVYIETYGCTMNQSDSDIMRGIL-AKNFELVDSADEADVVVINSCGVVDFTERKI---LK 58

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R  +LK    K      VV+AGC+ +   ++ L  S   + +V P   + +  +++    
Sbjct: 59  RAESLKRQGKK------VVMAGCLPRIATKKCLEVS---DALVSPDNVHVIDLVVKSVLK 109

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G++ +  D +  DK E +S V      +    A ++I EGC   C+FC   + RG   S 
Sbjct: 110 GEKPILIDRTDVDKSE-ISCVKRRL--RENAIAIVSIAEGCTGRCSFCATRFARGRLRSF 166

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
               +VDE RK ++NG  EI +  Q+  A+   GLD  +    DLL ++SEI+G  R+R 
Sbjct: 167 KFESIVDEVRKCVENGFKEIQITSQDTGAY---GLDKGRYMLPDLLRAISEIEGDFRVRV 223

Query: 266 TTSHPR---DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
              +PR   +M D L+ A  + + +  ++H+PVQSG + +L+ MNR H+  ++ +++   
Sbjct: 224 GMMNPRHAVEMLDDLLNAF-ESEKMYKFIHIPVQSGDENVLRDMNRDHSVEDFIEVVKAF 282

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R    D+ +S+D IVGFP ET++ F  T +L+  +        ++S R  TP    L+++
Sbjct: 283 RRRFDDVMVSTDVIVGFPTETEEAFWRTYELIKNVEPDIVNITRFSKRPFTPAYK-LKEI 341

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
              +  ER   L +  R   +  N   +G+ + VLI K+GK   KL  R+   + VV+  
Sbjct: 342 HGWIVKERSRKLTELARSIGLKRNRRFIGKRLRVLITKNGKNGTKL-ARADSYRPVVV-- 398

Query: 443 KNHNIGDIIKVRITDVKISTLYG 465
           +  NIG+ I VRI D   + L G
Sbjct: 399 REGNIGEFINVRIVDCAFNYLVG 421


>gi|239617933|ref|YP_002941255.1| MiaB-like tRNA modifying enzyme YliG [Kosmotoga olearia TBF 19.5.1]
 gi|239506764|gb|ACR80251.1| MiaB-like tRNA modifying enzyme YliG [Kosmotoga olearia TBF 19.5.1]
          Length = 433

 Score =  185 bits (469), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 125/440 (28%), Positives = 221/440 (50%), Gaps = 23/440 (5%)

Query: 33  GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92
           GC  N+ D    + +   +G+E  N ++ A ++V++TC   ++A ++    + R+ + K 
Sbjct: 9   GCPKNIADMDNFKGIMLKRGHEFANGVESAGIVVIDTCGFIDEAKKESIEEILRLCSFK- 67

Query: 93  SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDT 152
              +E  DL V+  GC+ Q    E+    P ++ ++G  +  +L +L+E   F       
Sbjct: 68  ---EEKPDLKVIAVGCLVQRYYRELKEGIPEIDGLIGVTSPEKLADLIEAGNF------- 117

Query: 153 DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVD 212
            + +E   +  ++ D  +       +++ I +GCD+ C FC +P  +G   SR + ++  
Sbjct: 118 -FFIE---KPSTVYDFKFRTYGKPYSYVKIGDGCDRGCAFCSIPSFKGSSRSRPIEEIEK 173

Query: 213 EARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
           E   L+  G+ EI L+ Q+   + G  + G K    DLL SL+EI G   +R    HP  
Sbjct: 174 EVCFLVSEGIREIVLVSQDTTQY-GVDIYG-KQALPDLLKSLNEIPGDFWIRVMYLHPDH 231

Query: 273 MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAIS 332
           +++ +I +   L+ ++ Y  +PVQSGSD ILK M R   A E + + ++IR+   D+ + 
Sbjct: 232 LTEGIINSILKLEKVVNYFDVPVQSGSDYILKRMGRTKKAGELKAMFEKIRAKESDVTLR 291

Query: 333 SDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLL 392
           +  +VGFPGET   F  T++ V+ + + +   F YSP  GTP  +    +DEN+  + L 
Sbjct: 292 TTIMVGFPGETRRTFEETLEFVNDVKFDKLGGFVYSPEEGTPAYSFKMTIDENMARQYLD 351

Query: 393 CLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS----KNHNIG 448
            L     E     N    G++++VLIE++ +E   ++GRSP     +  S    +    G
Sbjct: 352 ELLDLQDEISYELNQRHFGKVLKVLIEENTEE--VMIGRSPHFAPEIDGSIFLKRADEAG 409

Query: 449 DIIKVRITDVKISTLYGELV 468
           + +  RIT V    L G +V
Sbjct: 410 EFVMCRITGVYEHDLEGVIV 429


>gi|170723177|ref|YP_001750865.1| ribosomal protein S12 methylthiotransferase [Pseudomonas putida
           W619]
 gi|238066575|sp|B1JD88|RIMO_PSEPW RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|169761180|gb|ACA74496.1| MiaB-like tRNA modifying enzyme YliG [Pseudomonas putida W619]
          Length = 443

 Score =  185 bits (469), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 150/474 (31%), Positives = 237/474 (50%), Gaps = 67/474 (14%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  FV S GC   + DS R+      +GYE V + +DAD++V+NTC   + A  +    
Sbjct: 8   PKVGFV-SLGCPKALVDSERILTQLRMEGYEVVPTYEDADVVVVNTCGFIDSAKAESLEV 66

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G         IKE G   V+V GC+   EG  I    P V  V GPQ Y          
Sbjct: 67  IGEA-------IKENGK--VIVTGCMGVEEGS-IRDVHPSVLSVTGPQQY---------- 106

Query: 144 RFGKRVVDTDYSV----EDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
              ++VV+  + V    +D    + +V   G        A+L I EGC+  C+FC++P  
Sbjct: 107 ---EQVVNAVHEVVPPRQDHNPLIDLVPPQGVKLTPRHYAYLKISEGCNHSCSFCIIPSM 163

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTF 247
           RG  +SR + +V+ EA +L+  GV EI ++ Q+ +A           W G+ +   K   
Sbjct: 164 RGKLVSRPVGEVLSEAERLVKAGVKEILVISQDTSAYGVDVKYKTDFWNGRPV---KTRM 220

Query: 248 SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307
            +L  +LS +   VRL Y   +P       + A G    ++PYL +P Q  S ++LKSM 
Sbjct: 221 LELCEALSSLGAWVRLHYVYPYPNVDDVIPLMAAGK---ILPYLDIPFQHASPKVLKSMK 277

Query: 308 RRHTAYEYRQIIDRIRSVR---PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
           R   A+E R +  RI++ R   P++ I S FIVGFPGET++DF+  +D + +    +   
Sbjct: 278 R--PAFEDRTLA-RIKNWREQCPELVIRSTFIVGFPGETEEDFQYLLDWLTEAQLDRVGC 334

Query: 365 FKYSPRLGTPGSNM-LEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
           F+YSP  G P +++ LE+V ++VK E   R +  Q+ +   ++      +G+ IEVLI++
Sbjct: 335 FQYSPVEGAPANDLGLEEVPDDVKQERWDRFMAHQQAISSARLQLR---IGKEIEVLIDE 391

Query: 421 HGKEKGKLVGRS----PWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468
             +E+G  VGRS    P +   V    +H +  GD ++ R+ D     ++ E V
Sbjct: 392 V-EEQGS-VGRSFFDAPEIDGSVFIDGDHGLKPGDKVRCRVVDADEYDMWAEPV 443


>gi|194476759|ref|YP_002048938.1| hypothetical protein PCC_0286 [Paulinella chromatophora]
 gi|171191766|gb|ACB42728.1| hypothetical protein PCC_0286 [Paulinella chromatophora]
          Length = 444

 Score =  185 bits (469), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 130/453 (28%), Positives = 226/453 (49%), Gaps = 40/453 (8%)

Query: 33  GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92
           GC+ N  D+  +  +  + GY+   + + A L+V+NTC   ++A E+       IR +  
Sbjct: 12  GCEKNRVDTEHILGLLAAAGYQISANENTASLVVVNTCSFIQQAREE------SIRTI-- 63

Query: 93  SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDT 152
             + E G  L++ AGC+AQ   EE+L   P    ++G   Y  +  +L++   G+R+   
Sbjct: 64  VELAEQGKELII-AGCLAQHFQEELLNYIPEAKAIIGTGDYQHIVNILKKVEAGERI--- 119

Query: 153 DYSVEDKFERLSIVDGGYNRKRGVT---AFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209
              V D  E + + D    R R ++   A+L + EGCD  CTFC++P  RG + SR +  
Sbjct: 120 -NKVSD--EPIFLADEHLPRYRSISNPVAYLKVAEGCDYSCTFCIIPKLRGKQRSRPIES 176

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIK-GLVRLRYTT 267
           +V EA  L   GV E+ L+ Q    +   GLD   K   ++LL +L ++    +R+ Y  
Sbjct: 177 IVAEAHNLAAQGVKELILISQITTNY---GLDIYGKSKLTELLRALGQVDIPWIRVHY-- 231

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
           ++P  +++ ++ A+ D+  ++PYL LP+Q     +L++MNR         +I  IR   P
Sbjct: 232 AYPTGLTNDVLAAYKDVPNILPYLDLPLQHSHPNMLRAMNRPWQETINENVIKAIRKNLP 291

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
           +  + + FI GFPGET++ F   ++ + +  +     F +SP  GT  + M   +   + 
Sbjct: 292 NAVLRTTFITGFPGETEEYFEHLINFIKEQCFDHVGVFTFSPEDGTQAATMTNHIPFEIA 351

Query: 388 AE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVVL 440
            E   R++ LQ+ +   +   N  C+G I++VLIE+     G ++GR    +P +   V 
Sbjct: 352 QERRNRIMELQQPIARAK---NIQCIGNIVDVLIEQEQPNTGDMIGRCSRFAPDVDGEVH 408

Query: 441 -----NSKNHNIGDIIKVRITDVKISTLYGELV 468
                +     +G I++V IT      L GE+V
Sbjct: 409 VIPRSDGMRARLGTIVQVLITGADTYDLRGEIV 441


>gi|16759769|ref|NP_455386.1| ribosomal protein S12 methylthiotransferase [Salmonella enterica
           subsp. enterica serovar Typhi str. CT18]
 gi|29142458|ref|NP_805800.1| ribosomal protein S12 methylthiotransferase [Salmonella enterica
           subsp. enterica serovar Typhi str. Ty2]
 gi|213051906|ref|ZP_03344784.1| hypothetical protein Salmoneentericaenterica_02590 [Salmonella
           enterica subsp. enterica serovar Typhi str. E00-7866]
 gi|213428067|ref|ZP_03360817.1| hypothetical protein SentesTyphi_22295 [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213853079|ref|ZP_03382611.1| hypothetical protein SentesT_09591 [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
 gi|289827178|ref|ZP_06545920.1| hypothetical protein Salmonellentericaenterica_16188 [Salmonella
           enterica subsp. enterica serovar Typhi str. E98-3139]
 gi|81515236|sp|Q8Z861|RIMO_SALTI RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|25305455|pir||AH0603 conserved hypothetical protein yliG [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16502062|emb|CAD05298.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29138088|gb|AAO69649.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
          Length = 441

 Score =  185 bits (469), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 140/462 (30%), Positives = 233/462 (50%), Gaps = 45/462 (9%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  FV S GC  N+ DS R+     ++GY+ V   DDAD++++NTC   + A ++    
Sbjct: 8   PKIGFV-SLGCPKNLVDSERILTELRTEGYDVVPHYDDADMVIVNTCGFIDSAVQESLEA 66

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G   N       E G   V+V GC+   E ++I    P V  + GP +Y ++ + +   
Sbjct: 67  IGEALN-------ENGK--VIVTGCLGAKE-DQIREVHPKVLEITGPHSYEQVLQHVHH- 115

Query: 144 RFGKRVVDTDYSVEDKFER-LSIV-DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
                     Y  + K    LS+V + G        A+L I EGC+  CTFC++P  RG 
Sbjct: 116 ----------YVPKPKHNPFLSLVPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGD 165

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYS 253
            +SR +  V+ EA++L+D GV EI ++ Q+ +A+      R    +GE  K +   L   
Sbjct: 166 LVSRPIGDVLSEAKRLVDAGVKEILVISQDTSAYGVDVKHRTGFHNGEPMKTSMVSLCEQ 225

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
           LS++    RL Y   +P       + A G +   +PYL +P+Q  S RILK M R  +  
Sbjct: 226 LSKLGVWTRLHYVYPYPHVDDVIPLMAEGKI---LPYLDIPLQHASPRILKLMKRPGSVD 282

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
                I + R + P++ + S FIVGFPGET++DF+  +D + +    +   FKYSP  G 
Sbjct: 283 RQLARIKQWREICPELTLRSTFIVGFPGETEEDFQMLLDFLKEARLDRVGCFKYSPVEGA 342

Query: 374 PGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKL 428
             + + +QV E VK E   R + LQ+++  +++      VG+ I V++++  +E   G+ 
Sbjct: 343 GANELPDQVPEEVKEERWNRFMQLQQQISAERLQEK---VGREILVIVDEVDEEGAIGRS 399

Query: 429 VGRSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468
           +  +P +   V  +   N+  GDI++V++ +     L+G  V
Sbjct: 400 MADAPEIDGAVYLNGETNVKPGDIVRVKVENADEYDLWGSRV 441


>gi|325576888|ref|ZP_08147503.1| MiaB family RNA modification enzyme [Haemophilus parainfluenzae
           ATCC 33392]
 gi|325161094|gb|EGC73212.1| MiaB family RNA modification enzyme [Haemophilus parainfluenzae
           ATCC 33392]
          Length = 453

 Score =  185 bits (469), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 143/467 (30%), Positives = 234/467 (50%), Gaps = 52/467 (11%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
            P   FV S GC  N+ DS R+     + GY  V S ++ DL+++NTC   + A ++   
Sbjct: 13  TPNIGFV-SLGCPKNLVDSERILTELRTDGYNIVPSYENVDLVIVNTCGFIDSAVQESLE 71

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +G         ++E G   V+V GC+   E ++I +  P V  V GP +Y  +      
Sbjct: 72  AIGE-------ALEENGR--VIVTGCLGAKE-DQIRQVHPKVLEVSGPHSYETV-----M 116

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           A+  K V   +++         +   G        A+L I EGCD  CTFC++P  RG  
Sbjct: 117 AQVHKYVPKPEHNPYTSL----VPKQGVKLTPKHYAYLKISEGCDHRCTFCIIPSLRGDL 172

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-----RGKGLDGEKCTF-------SDL 250
            SRS++QV+DEA++L D GV E+ ++ Q+ +A+     R +G  G K  F       +DL
Sbjct: 173 ESRSITQVLDEAKRLADAGVKELLVVSQDTSAYAMDTQRKEG--GVKTAFWNGMPIKNDL 230

Query: 251 LYSLSEIKGL---VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307
           +    ++  L   VRL Y   +P       + A G   +L+PYL +P+Q  S +ILK+M 
Sbjct: 231 MTLCKQLGKLGIWVRLHYVYPYPHVDDLIPLMAEG---LLLPYLDIPLQHASPKILKAMK 287

Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           R        + I + R + PD+ + S FIVGFPGET++DF+  +D + +    +   FK+
Sbjct: 288 RPGKIDRTLERIKQWREICPDLTLRSTFIVGFPGETEEDFQMLLDFLKEAQLDRVGCFKF 347

Query: 368 SPRLGTPGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE 424
           SP  G   + M +QV E+VK E   R + LQ+++  +++      +GQ ++V++++   E
Sbjct: 348 SPVEGALATEMADQVPEDVKEERFHRFMQLQQEISAERLKQK---IGQTLDVIVDEIDNE 404

Query: 425 K--GKLVGRSPWLQSVV----LNSKNHNIGDIIKVRITDVKISTLYG 465
              G+    +P +  +V    L+     +G+ IKV IT      L+G
Sbjct: 405 GIIGRTKADAPEVDGLVYIENLSGTPVKVGEFIKVTITHSDEYDLWG 451


>gi|77919453|ref|YP_357268.1| putative MiaB-like tRNA modifying enzyme [Pelobacter carbinolicus
           DSM 2380]
 gi|77545536|gb|ABA89098.1| putative MiaB-like tRNA modifying enzyme [Pelobacter carbinolicus
           DSM 2380]
          Length = 432

 Score =  185 bits (469), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 126/442 (28%), Positives = 215/442 (48%), Gaps = 18/442 (4%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           F + + GC+ N ++S  M +     GY R++    ADL+++NTC +      +  + + R
Sbjct: 5   FAIVTLGCKTNQFESAAMAEQLEQAGYRRIDYSAGADLVIVNTCTVTAATDSQSRNLIRR 64

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
            R L  +         VVV GC AQ +   + +  P V+ V+G +    L   L+     
Sbjct: 65  ARRLNPA-------CRVVVTGCYAQIDPAAV-QNLPGVDRVLGNEEKSELLHWLDADGPK 116

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
            +V D   +    F+    ++   +R R   AF+ IQ GC+ FC++C++P+ RG   S  
Sbjct: 117 VQVGDIRQARGVTFD----LNAFGSRSR---AFVQIQNGCNAFCSYCIIPHARGPSRSAL 169

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
             QVVD+  K    G  EI L G ++  + G  L     + +DL+  L +   + RLR  
Sbjct: 170 PQQVVDQVCKFCTAGFPEIVLTGIHIGGY-GNDLQ-PPLSLADLVRRLLDDTQVSRLRLG 227

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
           +  P+++S  LI      + L P+ H+P+Q+G D +LK+MNR ++  ++R +++ I+   
Sbjct: 228 SIEPQEVSMELIDLVAHCERLCPHFHIPLQAGDDAVLKAMNRHYSVKDFRNLVEGIKLRV 287

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           P  AI  D I GFPGET++ F  T+ LV  +       F +S R GTP + M  Q+   V
Sbjct: 288 PQAAIGLDIITGFPGETENAFANTLALVRDLPVTHLHVFPFSKRPGTPAATMRHQISGTV 347

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHN 446
             +R   L+     +Q  +    +G+ ++V++E   K+  K  G S     V  ++ +H 
Sbjct: 348 ARQRAAELRALGEGKQAEYARGFIGKNLQVVVEG-SKQGSKRHGLSVHYLPVEFDTDDHW 406

Query: 447 IGDIIKVRITDVKISTLYGELV 468
                 V +   +  TL G+L+
Sbjct: 407 NQRTATVCVETTRQGTLLGKLI 428


>gi|258544695|ref|ZP_05704929.1| RNA modification enzyme, MiaB-family [Cardiobacterium hominis ATCC
           15826]
 gi|258520062|gb|EEV88921.1| RNA modification enzyme, MiaB-family [Cardiobacterium hominis ATCC
           15826]
          Length = 430

 Score =  185 bits (469), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 139/442 (31%), Positives = 206/442 (46%), Gaps = 33/442 (7%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC-HIREKAAEKVYSFLGRIRN 89
           S GC   + DS R+     + GY   +  DDADL+++NTC  I E  AE +        N
Sbjct: 12  SLGCPKALVDSERILTQINADGYAITDRYDDADLVIVNTCGFINEAVAESL--------N 63

Query: 90  LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149
             +  +++ G   V+V GC+   + E I  R P V  + GPQ Y  +   +         
Sbjct: 64  TISEALRQNGK--VIVTGCLG-VKPEIIRARCPDVLAITGPQAYESVMSAVHE------- 113

Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209
                   + +  L I   G        A+L I EGCD  CTFC++P  RG  +SR    
Sbjct: 114 -HLPKPAHNPYLDL-IPPAGLKLTPRHYAYLKIAEGCDHHCTFCIIPDLRGRLVSRPADA 171

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSH 269
           V+ EA+ L+  GV E+ ++ Q+ +A+   G D        L   L ++   VRL Y   +
Sbjct: 172 VLKEAQNLVKLGVKELLVVSQDTSAY---GADLGARGIHALARELGKLDAWVRLHYVYPY 228

Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329
           P D+ D LI    D   ++PYL +P+Q  S RILK+M R        + I R R + PD+
Sbjct: 229 P-DVDD-LIPLMAD-GAILPYLDIPLQHASPRILKAMRRPGNRERTLERIRRWREICPDL 285

Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAE 389
           A+ S FIVGFPGET+ DF   +  +++    +A  F YSP  G   + + +Q+ E++K E
Sbjct: 286 ALRSTFIVGFPGETEADFEELLAFIEEADINRAGCFAYSPVEGAAANALPDQIPEDIKQE 345

Query: 390 RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPW----LQSVVLNSKNH 445
           RL                  VG ++ V+I+    +     GR+P+    +  VV  S   
Sbjct: 346 RLQRFMAAQEAVSARLLADKVGSVLPVMIDAVDADNLAATGRTPYDAPEIDGVVHISDID 405

Query: 446 NI--GDIIKVRITDVKISTLYG 465
            I  GDI+ V I D     LYG
Sbjct: 406 GIKPGDIVHVEIEDSDAHDLYG 427


>gi|331269617|ref|YP_004396109.1| MiaB family RNA modification protein [Clostridium botulinum
           BKT015925]
 gi|329126167|gb|AEB76112.1| RNA modification enzyme, MiaB family [Clostridium botulinum
           BKT015925]
          Length = 444

 Score =  185 bits (469), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 131/439 (29%), Positives = 228/439 (51%), Gaps = 30/439 (6%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N  DS  +     ++  E VN+ ++AD+I++NTC   E + ++    +  +   
Sbjct: 10  SLGCDKNRIDSELLLGKL-NEKNEIVNNPNEADIIIVNTCGFIETSKQESIDTIIEMAQY 68

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
           K+   K     +++  GC+ Q   +E+    P +++++G   Y  +   ++        +
Sbjct: 69  KDKNCK-----MIIATGCLTQRYSKELQELIPEIDIMLGVNDYANIQNYIDEFFENHNKI 123

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVT-----AFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                 + K+  +SI +G    KR +T     A++ I EGCD FCT+C++P  RG   SR
Sbjct: 124 -----CQCKYSDVSINEG----KRILTTNKHVAYIRISEGCDNFCTYCIIPKIRGKYRSR 174

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           S+  +V EA++L   GV E+ L+GQ+  A  G+ +  E     +L+ ++SEI+ +  +R 
Sbjct: 175 SIDSIVKEAKELSAMGVKELILVGQDT-AIYGRDIYNEN-KLPELIRAISEIEAIEWIRV 232

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
             ++P +++D LI+     D +  YL +P+Q  S+ +LK MNRR T     + I ++RS 
Sbjct: 233 LYTYPEEITDELIEEIKSNDKVCNYLDIPIQHVSNTVLKRMNRRSTKEIISENIRKMRSE 292

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
             D+ + +  IVGFPGET+D+F    + + +I +     FKYS    T  + M +Q+ E 
Sbjct: 293 IKDLCLRTSIIVGFPGETEDEFNELKEFIKEIKFDNLGVFKYSQEEDTAAARMKDQISEE 352

Query: 386 VKAERLLCLQKKLREQQVS--FNDACVGQIIEVLIEKHGKEK--GKLVGRSPWLQSVVL- 440
           +K  RL  L   + +QQVS   N   +G++ +VLIE H  E   G+    +P +   +  
Sbjct: 353 LKQSRLEELM--IIQQQVSKEKNKNKIGKVYKVLIEGHNDEYWIGRNYQMTPEIDGAIFF 410

Query: 441 -NSKNHNIGDIIKVRITDV 458
              K  N+G+ I ++ITD 
Sbjct: 411 KCDKILNVGEFIYIKITDA 429


>gi|240949880|ref|ZP_04754204.1| MiaB-like tRNA modifying enzyme YliG [Actinobacillus minor NM305]
 gi|240295671|gb|EER46378.1| MiaB-like tRNA modifying enzyme YliG [Actinobacillus minor NM305]
          Length = 444

 Score =  185 bits (469), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 136/456 (29%), Positives = 222/456 (48%), Gaps = 46/456 (10%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ DS R+     S GY  + S + ADL+++NTC   + A ++    +G     
Sbjct: 12  SLGCPKNLVDSERILTELRSDGYNIIPSYEGADLVIVNTCGFIDSAVQESLESIGEALEA 71

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
                       V+V GC+   E + I    P V  + GP +Y  +          K V 
Sbjct: 72  NGK---------VIVTGCLGAKENQ-IREVHPKVLEITGPHSYEAV-----MKHVHKYVP 116

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
             +Y   + +  L +   G        A+L I EGCD  CTFC++P  RG   SRS+ QV
Sbjct: 117 KPEY---NPYVTL-VPKQGVKLTPKHYAYLKISEGCDHRCTFCIIPSMRGDLDSRSIVQV 172

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWR--GKGLDGEKCTFSD----------LLYSLSEIK 258
           +DEA++L+D+GV E+ ++ Q+ +A+    K  +G K  F +          L   L  + 
Sbjct: 173 LDEAKRLVDSGVKELLIVSQDTSAYALDKKKEEGTKTVFWNGMPIKNNLITLCEQLGSMG 232

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
             VRL Y   +P       + A G +   +PYL +P+Q  S +ILK+M R  +     + 
Sbjct: 233 VWVRLHYVYPYPHVDDLIPLMAQGKI---LPYLDIPLQHASPKILKAMKRPGSIERTLER 289

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           I + R + P++ + S FIVGFPGET++DF+  +D + +    +   FK+SP  G   + M
Sbjct: 290 IKKWREICPELTLRSTFIVGFPGETEEDFQMLLDFLKEAQLDRVGCFKFSPVEGAVATEM 349

Query: 379 LEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSP 433
            +QV E+VK E   R + LQ+++  Q++      +G+ + V++++   E   G+ +  +P
Sbjct: 350 ADQVPEDVKEERFHRFMQLQQEISAQRLQQK---IGKTLAVIVDEIDNEGIIGRSMADAP 406

Query: 434 WLQSVV----LNSKNHNIGDIIKVRITDVKISTLYG 465
            +  VV    L+    + G II V IT+     L+G
Sbjct: 407 EIDGVVYVDNLSEMEVSAGQIISVTITNADEYDLWG 442


>gi|16764214|ref|NP_459829.1| ribosomal protein S12 methylthiotransferase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|62179417|ref|YP_215834.1| ribosomal protein S12 methylthiotransferase [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|167992097|ref|ZP_02573195.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|168230763|ref|ZP_02655821.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|168236790|ref|ZP_02661848.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|168263635|ref|ZP_02685608.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|168466463|ref|ZP_02700325.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|168819992|ref|ZP_02831992.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|194445570|ref|YP_002040091.1| ribosomal protein S12 methylthiotransferase [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
 gi|194472522|ref|ZP_03078506.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|194734067|ref|YP_002113944.1| ribosomal protein S12 methylthiotransferase [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|197249990|ref|YP_002145812.1| ribosomal protein S12 methylthiotransferase [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
 gi|197362974|ref|YP_002142611.1| ribosomal protein S12 methylthiotransferase [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. AKU_12601]
 gi|198242582|ref|YP_002214817.1| ribosomal protein S12 methylthiotransferase [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|200390615|ref|ZP_03217226.1| MiaB-like tRNA modifying enzyme YliG [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|207856287|ref|YP_002242938.1| ribosomal protein S12 methylthiotransferase [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
 gi|75484309|sp|Q57RA8|RIMO_SALCH RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|81523437|sp|Q8ZQM1|RIMO_SALTY RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|238066584|sp|B5F0X7|RIMO_SALA4 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|238066587|sp|B5FPB9|RIMO_SALDC RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|238066588|sp|B5QXV6|RIMO_SALEP RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|238066591|sp|B4T0B2|RIMO_SALNS RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|238066593|sp|B5BBX8|RIMO_SALPK RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|238066626|sp|B4TQZ6|RIMO_SALSV RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|16419359|gb|AAL19788.1| putative Fe-S oxidoreductases family 1 [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|62127050|gb|AAX64753.1| putative Fe-S oxidoreductases family 1 [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|194404233|gb|ACF64455.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194458886|gb|EDX47725.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|194709569|gb|ACF88790.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|195630937|gb|EDX49523.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|197094451|emb|CAR59967.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|197213693|gb|ACH51090.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197290104|gb|EDY29461.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|197937098|gb|ACH74431.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|199603060|gb|EDZ01606.1| MiaB-like tRNA modifying enzyme YliG [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|205329653|gb|EDZ16417.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|205334686|gb|EDZ21450.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|205343222|gb|EDZ29986.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|205347796|gb|EDZ34427.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|206708090|emb|CAR32381.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|261246108|emb|CBG23911.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|301157436|emb|CBW16925.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|312911876|dbj|BAJ35850.1| hypothetical protein STMDT12_C09070 [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|320085126|emb|CBY94913.1| Ribosomal protein S12 methylthiotransferase rimO S12
           methylthiotransferase; S12 MTTase; Ribosome maturation
           factor rimO [Salmonella enterica subsp. enterica serovar
           Weltevreden str. 2007-60-3289-1]
 gi|321226432|gb|EFX51483.1| ribosomal protein S12 methylthiotransferase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. TN061786]
 gi|322713887|gb|EFZ05458.1| RNA modification enzyme [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
 gi|323129158|gb|ADX16588.1| hypothetical protein STM474_0877 [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|326622569|gb|EGE28914.1| putative FeS oxidoreductase [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
 gi|332987783|gb|AEF06766.1| ribosomal protein S12 methylthiotransferase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. UK-1]
          Length = 441

 Score =  185 bits (469), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 140/462 (30%), Positives = 233/462 (50%), Gaps = 45/462 (9%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  FV S GC  N+ DS R+     ++GY+ V   DDAD++++NTC   + A ++    
Sbjct: 8   PKIGFV-SLGCPKNLVDSERILTELRTEGYDVVPRYDDADMVIVNTCGFIDSAVQESLEA 66

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G   N       E G   V+V GC+   E ++I    P V  + GP +Y ++ + +   
Sbjct: 67  IGEALN-------ENGK--VIVTGCLGAKE-DQIREVHPKVLEITGPHSYEQVLQHVHH- 115

Query: 144 RFGKRVVDTDYSVEDKFER-LSIV-DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
                     Y  + K    LS+V + G        A+L I EGC+  CTFC++P  RG 
Sbjct: 116 ----------YVPKPKHNPFLSLVPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGD 165

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYS 253
            +SR +  V+ EA++L+D GV EI ++ Q+ +A+      R    +GE  K +   L   
Sbjct: 166 LVSRPIGDVLSEAKRLVDAGVKEILVISQDTSAYGVDVKHRTGFHNGEPVKTSMVSLCEQ 225

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
           LS++    RL Y   +P       + A G +   +PYL +P+Q  S RILK M R  +  
Sbjct: 226 LSKLGVWTRLHYVYPYPHVDDVIPLMAEGKI---LPYLDIPLQHASPRILKLMKRPGSVD 282

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
                I + R + P++ + S FIVGFPGET++DF+  +D + +    +   FKYSP  G 
Sbjct: 283 RQLARIKQWREICPELTLRSTFIVGFPGETEEDFQMLLDFLKEARLDRVGCFKYSPVEGA 342

Query: 374 PGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKL 428
             + + +QV E VK E   R + LQ+++  +++      VG+ I V++++  +E   G+ 
Sbjct: 343 GANELPDQVPEEVKEERWNRFMQLQQQISAERLQEK---VGREILVIVDEVDEEGAIGRS 399

Query: 429 VGRSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468
           +  +P +   V  +   N+  GDI++V++ +     L+G  V
Sbjct: 400 MADAPEIDGAVYLNGETNVKPGDIVRVKVENADEYDLWGSRV 441


>gi|289578370|ref|YP_003476997.1| MiaB-like tRNA modifying enzyme YliG [Thermoanaerobacter italicus
           Ab9]
 gi|297544647|ref|YP_003676949.1| MiaB-like tRNA modifying protein YliG [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
 gi|289528083|gb|ADD02435.1| MiaB-like tRNA modifying enzyme YliG [Thermoanaerobacter italicus
           Ab9]
 gi|296842422|gb|ADH60938.1| MiaB-like tRNA modifying enzyme YliG [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
          Length = 436

 Score =  184 bits (468), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 129/446 (28%), Positives = 227/446 (50%), Gaps = 28/446 (6%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N  DS +M  +   +GY  VN  ++AD++++NTC   E A  +   ++     +
Sbjct: 8   SLGCPKNTVDSEKMIAILKEKGYNIVNDENEADILIINTCSFIEDAKRESIEYI-----I 62

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
           +  ++K+     ++  GC+++   +E+L+  P ++ V+G   + ++ E++E    GK V+
Sbjct: 63  EMGKLKKHKLKYLIATGCLSERYNKELLKELPELDAVIGTGDFPKIAEVIEEIEKGKTVL 122

Query: 151 DTDYSV---EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
           +  ++    ++  +R+      Y       A+L I EGC   C+FC +P  RG   SR +
Sbjct: 123 EYGHANLLNDEGIQRILTTPNYY-------AYLKIAEGCSNVCSFCAIPRIRGRYRSRKM 175

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYT 266
             ++ EA +L+  G  E+ L+ Q+   +   G+D  +K     LL  LS I  L  +R  
Sbjct: 176 EDILKEAEELVKKGAKELILIAQDTTKY---GIDIYKKFMLPQLLKELSLIPNLKWIRLL 232

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
            ++P  ++D LI+       ++ Y+ +P+Q  +D +LK M R  T  +  ++I+++R++ 
Sbjct: 233 YAYPDSVTDELIEEIKANKKVVKYIDIPLQHSNDEVLKRMKRHTTRQKIEEVINKLRTI- 291

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           P++ I + F+VGFPGET+++F      V +  + +   F YS   GT    M  Q+ ++V
Sbjct: 292 PNMVIRTTFMVGFPGETEEEFEDLKHFVKEKRFERVGVFAYSREEGTKSYYMKPQIKKSV 351

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVL-- 440
           K  R   L +  +E     N + VG+ +EVLIE  G E G   GRS    P +  VV   
Sbjct: 352 KLRRQQELMEIQKEISYQHNLSKVGKQLEVLIE--GFEDGIYYGRSYMDAPEIDGVVYVK 409

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGE 466
           + K    G+ + V ITD     L GE
Sbjct: 410 SDKKLTAGEFVVVTITDAYEYDLVGE 435


>gi|255535760|ref|YP_003096131.1| MiaB family protein, possibly involved in tRNA or rRNA modification
           [Flavobacteriaceae bacterium 3519-10]
 gi|255341956|gb|ACU08069.1| MiaB family protein, possibly involved in tRNA or rRNA modification
           [Flavobacteriaceae bacterium 3519-10]
          Length = 454

 Score =  184 bits (468), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 131/424 (30%), Positives = 210/424 (49%), Gaps = 36/424 (8%)

Query: 20  QCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEK 79
           + + P+     + GC++N  ++  +       GY++V   D AD+ V+NTC + E A  +
Sbjct: 7   ETLQPKTAAYHTLGCKLNFSETSTIARQLTGAGYQKVGFDDKADVYVINTCSVTENADRE 66

Query: 80  VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPI--VNVVVGPQTYYR-- 135
               + R        +K   D LVV+ GC AQ + EEI   S I  V++V+G +  +   
Sbjct: 67  CKYHVKRA-------MKANPDGLVVILGCYAQLKPEEI---SAIEGVDLVLGAKEKFNIL 116

Query: 136 --LPELLERARFGK----RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKF 189
             L +L + A  G      + +TD+ +           G Y+      AFL +Q+GCD  
Sbjct: 117 SYLGDLQKTANHGLIHSCEIDETDFFI-----------GSYSIGDRTRAFLKVQDGCDYK 165

Query: 190 CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK---CT 246
           CT+C +P  RGI  S ++  VV  A ++   G+ EI L G N+  + GKG  G K    T
Sbjct: 166 CTYCTIPLARGISRSDTIENVVQNAAEIAAKGIKEIVLTGVNIGDY-GKGEFGNKKHEHT 224

Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306
           F DL+  L  ++G+ R+R ++  P  + D  I+        +P+ H+P+QSGSD +LK M
Sbjct: 225 FLDLISELDLVEGIERIRISSIEPNLLKDESIELVARSKRFVPHFHIPLQSGSDDLLKKM 284

Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
            RR+    Y + I++IRSV PD  I  D I+GFPGET++ F  T   +  +  +    F 
Sbjct: 285 KRRYLTALYSERINKIRSVVPDACIGVDVIIGFPGETEEKFLETYRFLSDLPISYLHVFT 344

Query: 367 YSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG 426
           YS R  T  + M   V    +  R   L+    +++++F  +  G+ + VL E H  + G
Sbjct: 345 YSERENTEAAAMDGAVPVPERKRRNKMLRILSEKKKMAFYQSQTGKTLPVLWE-HENKNG 403

Query: 427 KLVG 430
            + G
Sbjct: 404 LMYG 407


>gi|149378381|ref|ZP_01896082.1| hypothetical protein MDG893_01565 [Marinobacter algicola DG893]
 gi|149357330|gb|EDM45851.1| hypothetical protein MDG893_01565 [Marinobacter algicola DG893]
          Length = 447

 Score =  184 bits (468), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 141/455 (30%), Positives = 218/455 (47%), Gaps = 43/455 (9%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC   + DS R+       GY+ V + +DAD++V+NTC   + A ++    +G     
Sbjct: 19  SLGCPKALVDSERILTQLRLDGYDVVPTYNDADIVVVNTCGFIDAAKQESLDAIGEA--- 75

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               I E G   V+V GC+   E E I    P V  V GP  Y  +   + +     +  
Sbjct: 76  ----INENGK--VIVTGCMG-VEAERIRDTHPGVLAVSGPHAYEEVVGAVHQFVPPNKQ- 127

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
                  D F  L    G     R   A+L I EGC+  CTFC++P  RG  +SR +  V
Sbjct: 128 ------HDPFTDLVPPQGIKLTPRHY-AYLKISEGCNHRCTFCIIPSMRGDLVSRPIGDV 180

Query: 211 VDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYSLSEIKG 259
           +DEA++L+D GV E+ ++ Q+ +A           W+G+ L   K     L  +L E+  
Sbjct: 181 MDEAKRLVDAGVKELLVISQDTSAYGVDTKYRTGFWQGRPL---KTKMQSLCEALGEMGV 237

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
            VRL Y   +P       + A G +   +PYL +P Q  S ++LK+M R     +  + I
Sbjct: 238 WVRLHYVYPYPHVDDVIPLMAEGKI---LPYLDIPFQHASPKVLKAMKRPAHDSKTLERI 294

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            + R + P++ I S FIVGFPGET++DF+  +D +D+    +  +FKYSP  G   + + 
Sbjct: 295 RKWRDICPELTIRSTFIVGFPGETEEDFQYLLDWLDEAQLDRVGAFKYSPVEGAKANEIE 354

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWL 435
             V E VK ERL    +K      +   A +GQ I+VLI++  +E    +GRS    P +
Sbjct: 355 GAVPEEVKEERLARFMEKQAGISAARLRAKIGQTIDVLIDEVDEEGA--IGRSKADAPEI 412

Query: 436 QSVV-LNSKNHNI-GDIIKVRITDVKISTLYGELV 468
             +V LN +   + G I++  +       L+  LV
Sbjct: 413 DGMVYLNDETGLVPGQIVQAMVEHADEHDLWASLV 447


>gi|188996972|ref|YP_001931223.1| MiaB-like tRNA modifying enzyme [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188932039|gb|ACD66669.1| MiaB-like tRNA modifying enzyme [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 438

 Score =  184 bits (468), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 121/431 (28%), Positives = 214/431 (49%), Gaps = 21/431 (4%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC+MN +++  +E+ F  +GY   +  D AD+ V+NTC +   A          IR  
Sbjct: 14  TLGCRMNQFETSALEEQFQVKGYSITDFEDVADIYVINTCTVTNDADRTSRKI---IRQA 70

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER---ARFGK 147
           K    +   + +VV  GC AQ   EE+ +   I ++V+G      + E++E     +F  
Sbjct: 71  K----RRNPNAVVVATGCYAQVSPEELAKMEEI-DLVIGNSHKTAVFEIVENYINEKFEN 125

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
           +V   +   E++F+   I         G    + +QEGC+ FC+FC++P+ RG   S  +
Sbjct: 126 KVFIENIFRENQFKTFQISTFF----EGARPIIKVQEGCNSFCSFCIIPFARGKVRSAKI 181

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
            ++V++ + L+D G  EI L G  ++ +   G D ++ T  DLL +L +I+ L R+R ++
Sbjct: 182 DEIVNQVKILVDKGFKEIVLTGTQLSQY---GYDHKEGTLYDLLKNLVKIENLYRIRLSS 238

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
               ++ D  I      + + P+ HL +QS  D++L+ M R +T  EY + +++I S RP
Sbjct: 239 MGINELDDKFIDFLTSEEKIAPHFHLSIQSADDKVLRDMKRNYTVKEYMEKVEKIISKRP 298

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
           + AI +D I GFP E    F  T+  ++ I +A    F YS R GT      ++V    K
Sbjct: 299 ETAIGTDIITGFPTEDKTAFLNTVKTINNIPFAYIHVFTYSQRDGTTAVKFGDKVLPEEK 358

Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNI 447
            ER   L++   ++   F    + + +E LI    ++  K+     ++ + +   K   I
Sbjct: 359 KERTRILREISYQKNYEFRKRFINKDLEFLIISE-RDDYKIAVTGNYIHAKIKTEK--AI 415

Query: 448 GDIIKVRITDV 458
             IIK  +T++
Sbjct: 416 NTIIKANLTEI 426


>gi|312886291|ref|ZP_07745904.1| MiaB-like tRNA modifying enzyme [Mucilaginibacter paludis DSM
           18603]
 gi|311301236|gb|EFQ78292.1| MiaB-like tRNA modifying enzyme [Mucilaginibacter paludis DSM
           18603]
          Length = 440

 Score =  184 bits (468), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 113/391 (28%), Positives = 206/391 (52%), Gaps = 14/391 (3%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N  ++  +  +F   G++ V+  D  D+ V+NTC + + A +K        + +
Sbjct: 9   TLGCKLNYSETSTIGRLFNKAGFDTVDFADTPDVFVINTCSVTDNADKKC-------KKI 61

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               +K   +  V + GC AQ + +EI    P V++V+G    + + E +       + +
Sbjct: 62  VKEALKISPNAYVTIVGCYAQLKPQEIAE-IPGVDMVLGAAEKFNIVEHIADLTKKPKTL 120

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
             +  V +  + ++    G NR R    FL +Q+GCD  CTFC +P  RG   S ++  V
Sbjct: 121 VYNQPVSEANQFIASYSFGDNRTR---TFLKVQDGCDYSCTFCTIPLARGASRSDTVESV 177

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK-CTFSDLLYSLSEIKGLVRLRYTTSH 269
           +++AR +  +GV EI L G N+  +  +  DG++   F DL+ +L E+ G+ R+R ++  
Sbjct: 178 LEQARAIAASGVKEIVLTGVNIGDYGIR--DGKREHKFFDLVKALDEVDGIDRIRISSIE 235

Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329
           P  ++D +I+         P+ H+P+QSGS++IL  M RR+    Y   + +I+ + PD 
Sbjct: 236 PNLLTDEIIEFVAVSKRFAPHFHIPLQSGSNKILSLMRRRYKRELYADRVAKIKQLMPDC 295

Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAE 389
            I  D IVGFPGET +DF  T + ++++  +    F YS R  T  + M   V  + ++E
Sbjct: 296 CIGVDVIVGFPGETREDFVETYNFLNELNISYLHVFTYSERENTLAAEMTGTVPGSTRSE 355

Query: 390 RLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
           R   L     +++ +F ++ +G+ +E+L E+
Sbjct: 356 RSKMLHILSDKKRRAFYESQLGKHVEILFER 386


>gi|167630431|ref|YP_001680930.1| miab-like tRNA modifying enzyme [Heliobacterium modesticaldum Ice1]
 gi|238066299|sp|B0TIH8|RIMO_HELMI RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|167593171|gb|ABZ84919.1| miab-like tRNA modifying enzyme [Heliobacterium modesticaldum Ice1]
          Length = 460

 Score =  184 bits (468), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 134/462 (29%), Positives = 222/462 (48%), Gaps = 32/462 (6%)

Query: 20  QCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEK 79
           + I+  +  + S GC  N  D+  M  +    GYE     +DA ++++NTC     A E+
Sbjct: 13  EAILTMKIHITSLGCAKNRVDTEVMMGLLREAGYELTQREEDAHVLLVNTCGFILPAKEE 72

Query: 80  VYSFLGRIRNLKNSRIKEGGDL-LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPE 138
               +     L+ +R KE G    ++VAGC+ Q    E+    P V+   GP    R+  
Sbjct: 73  SIQTI-----LELARYKETGRCRALLVAGCLPQGYAGELAAELPEVDAFFGPGDVPRVTS 127

Query: 139 LLERARFGKRVVDT---DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
           ++     GKR ++    D+  +    R+      Y       A++ I +GCD  C +C +
Sbjct: 128 IVAEVLRGKRSLEVGKPDFLYDHTMPRVLSTPFHY-------AYVKIADGCDNRCGYCAI 180

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD--GEKCTFSDLLYS 253
           P  RG   SRS   +V+E R L+D G+ E  L+ Q+   +   G+D  GE    + L+  
Sbjct: 181 PNLRGRFRSRSEESIVEETRSLVDRGIQEALLIAQDTTCY---GVDRYGE-FRLAQLIGK 236

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
           L+ I GL  +R    +P   +  LI+A      +  Y+ LP+Q   D +L+SMNR     
Sbjct: 237 LASIDGLRWIRLMYCYPSHFTPELIEAMAAEPKVCRYVDLPLQHADDELLRSMNRHAGVD 296

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
           E R++I  +R   P +AI + FIVG PGET++ F+  +D + ++ + +   F YS    T
Sbjct: 297 EIRRLIRTLRERLPGLAIRTSFIVGLPGETEEKFQRLLDFLAEMRFDRVGIFTYSREENT 356

Query: 374 PGSNMLEQVDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKH---GKEKGK 427
           P   + +QV E VK ER    + LQ+++    +S     +G+ +EVL+E+    G  +G+
Sbjct: 357 PAGKLADQVPEEVKEERYHRAMVLQQEI---SLSIQQEWIGKTLEVLVEEEVAPGLYRGR 413

Query: 428 LVGRSPWLQS-VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
               +P +   +    ++  IG+   VRIT      L GE +
Sbjct: 414 SEREAPEVDGHIEFKGRHRMIGEWANVRITAASHYDLMGEAI 455


>gi|126663485|ref|ZP_01734482.1| possible 2-methylthioadenine synthetase [Flavobacteria bacterium
           BAL38]
 gi|126624433|gb|EAZ95124.1| possible 2-methylthioadenine synthetase [Flavobacteria bacterium
           BAL38]
          Length = 447

 Score =  184 bits (468), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 126/420 (30%), Positives = 210/420 (50%), Gaps = 25/420 (5%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N  ++  +   F ++G+ERV   + AD+ V+NTC + + A ++    + +   L
Sbjct: 11  TLGCKLNFSETSTIARDFQNEGFERVEFEEIADIYVINTCSVTDNADKQFKQIVKKAMKL 70

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
            +          V   GC AQ + EE L     V++V+G    +++ + +      K  +
Sbjct: 71  NDK-------AFVAAVGCYAQLKPEE-LAAVDGVDLVLGATEKFKITDYIND--LSKNDM 120

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
              +S E   E      G Y+      AFL +Q+GCD  CT+C +P  RGI  S ++  V
Sbjct: 121 GEVHSCE--IEEADFYVGSYSFGDRTRAFLKVQDGCDYKCTYCTIPLARGISRSDTMEGV 178

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK---CTFSDLLYSLSEIKGLVRLRYTT 267
           +  A+++   G+ EI L G N+  + GKG  G K    TF DL+  L +++G+ RLR ++
Sbjct: 179 LKNAKEISAKGIKEIVLTGVNIGDY-GKGEFGNKKHEHTFLDLVTELDKVEGIERLRISS 237

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
             P  + +  I+        +P+ H+P+QSGS+ ILK M RR+    Y   +++IR V P
Sbjct: 238 IEPNLLKNETIELVSKSRAFVPHFHIPLQSGSNDILKKMKRRYLRELYVDRVNKIREVMP 297

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
              I  D IVGFPGETD+ F  T   ++ +  +    F YS R  T  + M   V  NV+
Sbjct: 298 HACIGVDVIVGFPGETDEHFLETYHFLNDLDISYLHVFTYSERDNTEAAEMEGVVPANVR 357

Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG--------RSPWLQSVV 439
           ++R   L+    +++ +F ++ +G    VL E   KE G + G        ++PW   +V
Sbjct: 358 SKRSKMLRGLSVKKRRAFYESQIGTKRTVLFENENKE-GYIHGFTENYVKVKTPWNPELV 416


>gi|326203617|ref|ZP_08193481.1| MiaB-like tRNA modifying enzyme YliG [Clostridium papyrosolvens DSM
           2782]
 gi|325986437|gb|EGD47269.1| MiaB-like tRNA modifying enzyme YliG [Clostridium papyrosolvens DSM
           2782]
          Length = 446

 Score =  184 bits (468), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 126/462 (27%), Positives = 234/462 (50%), Gaps = 37/462 (8%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + ++  + S GC  N+ DS  M  M     YE VN+ +DA+++++NTC   E A ++  +
Sbjct: 1   MKKKIGIVSLGCPKNLVDSEIMLGMLSHADYEIVNNKEDANVLIVNTCGFIESAQQESIN 60

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +  + + K    +     +++V GC+A+   E+IL + P V+ V+G   Y  + E++  
Sbjct: 61  TILEMADEKGHNCE-----VLIVTGCMAERYKEKILEQIPEVDAVLGTGNYKEIAEVINL 115

Query: 143 ARFGKRVV------DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
           A  G++ V      +TDY      ++  ++          + +L I EGCD  CT+C++P
Sbjct: 116 AYMGEKTVAYGKLDETDY-----LDQERVISSAKQ-----SVYLKISEGCDNRCTYCIIP 165

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256
           + RG   SR +  +V EA  L   G  EI ++ Q+   + G  L G+K    +L+ ++S+
Sbjct: 166 FLRGKYRSRKMESLVREAELLAQKGAKEIIIVAQDSTRY-GIDLYGKK-MLPELIRNISD 223

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           I G+  +R    +P +++D LI+       +  YL +P+Q  SDR+LK M RR T  + +
Sbjct: 224 INGIEWIRLLYCYPEEINDELIEEIAKNPKVCKYLDIPIQHASDRVLKQMGRRGTICDIK 283

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
           Q+++++R     I I +  IVGFPGET++DF   +  + +    +   F YS   GT  +
Sbjct: 284 QVLNKLREKVSGITIRTSLIVGFPGETEEDFEELIAFLKEYRLDRVGVFTYSKEDGTAAA 343

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVS----FNDACVGQIIEVLIEKHGKEK----GKL 428
            +  Q+ + +K  R    QKK+ E Q +     N    G++ + +++    +     G+ 
Sbjct: 344 KLKGQIPKRIKLNR----QKKILELQNTISREINQDRNGKVFKTIVDGIADDGIFYYGRT 399

Query: 429 VGRSPWLQSVV--LNSKNHNIGDIIKVRITDVKISTLYGELV 468
              +P +  V+   +++  +IG    V+I + +   L GE++
Sbjct: 400 YAEAPEIDGVIYFTSAEELSIGSFTNVKILNSEDYDLIGEVI 441


>gi|222099771|ref|YP_002534339.1| MiaB-like tRNA modifying enzyme YliG [Thermotoga neapolitana DSM
           4359]
 gi|221572161|gb|ACM22973.1| MiaB-like tRNA modifying enzyme YliG [Thermotoga neapolitana DSM
           4359]
          Length = 430

 Score =  184 bits (468), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 137/449 (30%), Positives = 230/449 (51%), Gaps = 38/449 (8%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA----EKVYSFL 84
           +K  GC  N  D   +  +   +G+E V+++++AD++VL+TC   E A     +++ SF+
Sbjct: 5   IKVLGCPKNEADCEILAGLLKERGHEIVHNVEEADVVVLDTCAFIEDAKKESIDEILSFV 64

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
                      KE     +VV GC+ Q    E+ +  P V+  +G     ++  LLE   
Sbjct: 65  ---------EAKEDYGYRLVVKGCLVQRYYRELKKEIPEVDQWIGVVAPEKIVSLLENGE 115

Query: 145 -FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
               +  +T YS     +R+++ +  Y       A++ I +GCD+ CTFC +P  +G   
Sbjct: 116 DLVPQRPETVYSYR---KRINLEEKPY-------AYVKISDGCDRKCTFCSIPSFKGNLK 165

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SRS+  +V E   L+  G  EI L+ Q+  ++ G+ L G K   SDLL  L+ +KG   +
Sbjct: 166 SRSVEDIVHEVEDLLAEGKKEIILVAQDTTSY-GEDLYG-KQALSDLLRRLNSLKGDFWI 223

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R    HP  ++D +I     L+ ++ Y  +PVQ GSDRIL  M R  ++ E + ++ RIR
Sbjct: 224 RVMYLHPDHLTDEIIDTILKLEKVVNYFDVPVQHGSDRILTLMGRIRSSKELKNMLLRIR 283

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              PD  + +  IVGFPGET++DF      V+++ + +   F YS   GT  S++  +VD
Sbjct: 284 DKAPDAVLRTSVIVGFPGETEEDFEELKRFVEEVKFDKLGVFVYSDEEGTVASSLKNKVD 343

Query: 384 ENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQ 436
                 + E LL LQ ++  +++   D  VG+ ++ L+E  G+E G L+GR+    P + 
Sbjct: 344 PETARRRQEELLLLQAEISYERL---DRFVGKSMKALVE--GRENGYLIGRTFTEAPEVD 398

Query: 437 SVVLNSKNHNIGDIIKVRITDVKISTLYG 465
            VV       +GD ++V I +     ++G
Sbjct: 399 GVVFIKGRGEMGDFLEVTIEEHDEYDMWG 427


>gi|89898289|ref|YP_515399.1| hypothetical protein CF0482 [Chlamydophila felis Fe/C-56]
 gi|123722311|sp|Q254N4|RIMO_CHLFF RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|89331661|dbj|BAE81254.1| conserved hypothetical protein [Chlamydophila felis Fe/C-56]
          Length = 460

 Score =  184 bits (468), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 116/416 (27%), Positives = 205/416 (49%), Gaps = 20/416 (4%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ D+  M  +    GYE   S+++AD ++LNTC   + A ++   +L RI   
Sbjct: 22  SLGCSRNLVDTEVMLGILLKSGYEATESLEEADYLILNTCAFLKAARDESTDYLQRIIKA 81

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
           K    K      +++ GC+     EE+    P ++ V+G      +   +E   +G+++ 
Sbjct: 82  KKETAK------IILTGCMVSKHKEELKPLLPHIHYVLGSGDVEHILSAIESKEYGEKIS 135

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
              Y    +  R       Y       A+L I EGC K C FC++P  +G   S+ L Q+
Sbjct: 136 SKSYLEMGEIPRKLSTPKHY-------AYLKIAEGCRKRCAFCIIPTIKGALRSKPLDQI 188

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE-KCTFSDLLYSLSEIKGLVRLRYTTSH 269
           + E R L+  GV EI L+ Q++  + GK    + K     +L  + +  G   +R    +
Sbjct: 189 IKEFRLLLKMGVKEIILIAQDLGDY-GKDFSADRKSCLDKVLKEMLKEPGDYWIRMLYLY 247

Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329
           P ++ D +I        L+PY+ +P+Q  ++R+LK M R  +  +   ++ ++R+  P I
Sbjct: 248 PDEVDDTIIDLMESDHRLLPYVDIPLQHINNRVLKKMLRTTSKEQILDLLTKLRTRIPHI 307

Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAE 389
            I S FIVGFPGETDD+F+  +D V +        F YS   G+  ++M +QV ++VK++
Sbjct: 308 YIRSSFIVGFPGETDDEFQDLVDFVREGWIDNLGIFSYSQEEGSVAADMPDQVSQSVKSK 367

Query: 390 RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-----GKLVGRSPWLQSVVL 440
           RL  L +  ++     N   VGQ++E +I+ +  +       +  G++P +   ++
Sbjct: 368 RLKILSQAQKQNVEKHNQKLVGQVVEAVIDGYHPDSELLLTARFYGQAPEVDPCII 423


>gi|86142709|ref|ZP_01061148.1| hypothetical protein MED217_07336 [Leeuwenhoekiella blandensis
           MED217]
 gi|85830741|gb|EAQ49199.1| hypothetical protein MED217_07336 [Leeuwenhoekiella blandensis
           MED217]
          Length = 447

 Score =  184 bits (468), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 128/431 (29%), Positives = 215/431 (49%), Gaps = 25/431 (5%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N  ++  +   F ++G++RV+  D AD+ V+NTC + E A +       R + +
Sbjct: 12  TLGCKLNFSETATISRSFENEGFDRVDFKDTADIYVINTCSVTENADK-------RFKTI 64

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
                K   D  V   GC AQ + EE L     V++V+G    +++ + L      K  +
Sbjct: 65  VKQAQKVNPDAFVAAVGCYAQLKPEE-LADVDGVDLVLGATEKFKITDYLND--LSKNDM 121

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
              +S E   E      G Y+      AFL +Q+GCD  CT+C +P  RGI  S +L  V
Sbjct: 122 GEVHSCE--IEDADFYVGSYSVGDRTRAFLKVQDGCDYKCTYCTIPLARGISRSDTLQNV 179

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK---CTFSDLLYSLSEIKGLVRLRYTT 267
           +  AR++   G+ EI L G N+  + GKG  G K    TF DL+ +L +++G+ RLR ++
Sbjct: 180 LKNAREISAQGIREIVLTGVNIGDY-GKGEFGNKKHEHTFLDLVKALDQVEGIERLRISS 238

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
             P  + +  I+        +P+ H+P+QSG++ +L  M RR+    Y   +  I+ + P
Sbjct: 239 IEPNLLKNETIEVVAASRAFVPHFHIPLQSGNNEMLGKMRRRYRRELYVDRVAAIKKLMP 298

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
           D  I  D IVGFPGETD+ F  T + ++++  +    F YS R  T  ++M   V    +
Sbjct: 299 DACIGVDVIVGFPGETDEHFLDTYNFLNELDISYLHVFTYSERDNTLAADMDGAVPLKRR 358

Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG--------RSPWLQSVV 439
            +R   L+    +++ +F ++ +G    VL E   K KG + G        ++PW  S++
Sbjct: 359 KKRSKMLRGLSAKKRRAFYESQLGTQRTVLFEGENK-KGYIHGFTENYVKVKTPWDPSLI 417

Query: 440 LNSKNHNIGDI 450
             +    + DI
Sbjct: 418 NTTHTIELTDI 428


>gi|307106392|gb|EFN54638.1| hypothetical protein CHLNCDRAFT_135184 [Chlorella variabilis]
          Length = 635

 Score =  184 bits (468), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 142/496 (28%), Positives = 227/496 (45%), Gaps = 105/496 (21%)

Query: 11  AHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC 70
           A   + + D    P+  FV++YGCQMNV DS                       +VL   
Sbjct: 90  APSPAALPDAASPPRTAFVETYGCQMNVNDSE----------------------VVL--- 124

Query: 71  HIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVV-VAGCVAQAEGEEILRRSPIVNVVVG 129
                    ++  LG +++LK     E     VV V GC+A+   E +L R  +V++V G
Sbjct: 125 --------AIWQRLGYLKSLKRRPGAERRPPPVVGVLGCMAERLKERLLEREKLVDIVAG 176

Query: 130 PQTYYRLPELLE-----------------RARFGKRV--VDTDYSVEDKFERLSIVDGGY 170
           P  Y  LP L++                   R G R   ++   S ++ +  ++ +    
Sbjct: 177 PDAYRDLPRLIDIVQGGAGGPGGVLGSGGLPRPGGRAAAMNVQLSADETYADITPL---- 232

Query: 171 NRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQ 230
            +   ++AF++I  GC+  C FC+VPYTRG E SR L  +V   R L + GV E+TLLGQ
Sbjct: 233 RQPDALSAFVSIMRGCNNMCAFCIVPYTRGRERSRPLQSIV---RMLSEQGVREVTLLGQ 289

Query: 231 NVNAWRG----------------------KGLDGE---------------------KCTF 247
           NVN++                        +   GE                       +F
Sbjct: 290 NVNSYADFSNNHDDSSSGVGSSSRGGGVEEASAGEDPFGAVYARGFRSAYRPRRQGAASF 349

Query: 248 SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307
           ++LL +++ +   +R+R+T+ HP+D SD +++       +   LH+P QSGS  +L+ M 
Sbjct: 350 AELLDAVAGVDPEMRIRFTSPHPKDFSDDVLRVIASRPNVCKQLHMPAQSGSSAVLERMR 409

Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           R +T   Y  ++  +R+  P++A+S+D I GF GE ++D  A++DLV   GY QAF F Y
Sbjct: 410 RGYTREAYDALVRHVRNAIPEVALSTDMIAGFCGEGEEDHAASLDLVRSAGYDQAFLFAY 469

Query: 368 SPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEK 425
           S R  T  + +  + V E VK  RL  L    R++      A +G+   VL+E    + +
Sbjct: 470 SMRGKTHAARHYQDDVPEEVKQRRLAELIAAYRQELYRRAAAELGRRHLVLVEGPSRRSE 529

Query: 426 GKLVGRSPWLQSVVLN 441
             L GR+   + VV +
Sbjct: 530 SALTGRTDTFKRVVFD 545


>gi|322418994|ref|YP_004198217.1| MiaB-like tRNA modifying enzyme [Geobacter sp. M18]
 gi|320125381|gb|ADW12941.1| MiaB-like tRNA modifying enzyme [Geobacter sp. M18]
          Length = 432

 Score =  184 bits (468), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 132/447 (29%), Positives = 212/447 (47%), Gaps = 21/447 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA-AEKVYSF 83
           +R  + + GC++N ++S  M +     GY  V   + AD+ V+N+C +  K  AE     
Sbjct: 3   KRIAITTLGCKINQFESAAMTEALEQDGYSFVPFSETADIYVINSCTVTAKTDAESRRLI 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
               R    +R        VVV GC AQ  G+E+L+  P VN+++G      +   ++  
Sbjct: 63  RRAARLNPEAR--------VVVTGCYAQMAGDELLKL-PGVNLILGNSEKKDIVGFIKGL 113

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
               + V +D S +   ER  +     + +    AFL +Q GCD  C +C+VPY RG   
Sbjct: 114 GDEPQAVVSDISKQRSGERTQLESFAEHTR----AFLQVQNGCDARCAYCIVPYARGASR 169

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR- 262
           S +  + +D        G  EI L G ++ A+   GLD +  T    L  L+E +G VR 
Sbjct: 170 SVAPQEALDGMAAFAAKGFQEIVLTGIHLGAY---GLDLDPPTDLLGLMKLAEGQGSVRR 226

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LR  +  P ++   +I       ++ P+LHLP+QSGSD +L  MNR +    +  ++  +
Sbjct: 227 LRIGSVEPTEVPAEMISFMAGSRIVCPHLHLPLQSGSDGVLSRMNRGYDTALFGDVVRAL 286

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
            +V PD+ I SD I GFPGETD +F   +  ++ +  A    F +S R GTP + M  QV
Sbjct: 287 VAVMPDVCIGSDVIAGFPGETDREFEEALSFIESLPLAYLHVFPFSQRPGTPAATMAAQV 346

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
              V  ER   L+    +++  +    VG+ + VL++   K++G   G S     V++  
Sbjct: 347 QPRVIKERAEALRVLSEKKKAQYAARFVGRELPVLVQ---KDEGGRKGLSRNYLPVLIEG 403

Query: 443 KNHNIGDIIKVRITDVKISTLYGELVV 469
               +   + V IT  +   L G L  
Sbjct: 404 CEGLVNQEVSVLITGTRGGELLGRLAA 430


>gi|126695455|ref|YP_001090341.1| Fe-S oxidoreductase [Prochlorococcus marinus str. MIT 9301]
 gi|238066596|sp|A3PAG5|RIMO_PROM0 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|126542498|gb|ABO16740.1| possible Fe-S oxidoreductase [Prochlorococcus marinus str. MIT
           9301]
          Length = 454

 Score =  184 bits (468), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 130/455 (28%), Positives = 237/455 (52%), Gaps = 44/455 (9%)

Query: 33  GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92
           GC+ N+ D+  M+ +   +GYE  ++++DA+++V+NTC   E A E+    + +I    N
Sbjct: 22  GCEKNLVDTEHMQGLLHKEGYEVDSNINDANVVVVNTCSFIETAREES---IRKILEYTN 78

Query: 93  SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDT 152
               +G +  V+VAGC+AQ   +E+++  P +  +VG   Y ++ ++L+R   G+ V + 
Sbjct: 79  ----QGKE--VIVAGCMAQHFKDELIKEIPEIKGLVGTGDYQKIAKVLDRVEKGEIVNEV 132

Query: 153 ----DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
               ++  +++  R   VD     K    A+L I EGC+  C FC++P  RG + SR++ 
Sbjct: 133 SKIPEFIADEEMPRF--VD-----KNKFVAYLRIAEGCNYNCAFCIIPKLRGPQRSRTIE 185

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK-GLVRLRYTT 267
            ++ EA+ L   G+ EI L+ Q +    G+ + G K + + LL  LS++    +R+ Y  
Sbjct: 186 SILSEAKSLAKKGIQEIILISQ-ITTNYGQDIYG-KPSLAKLLNELSKVPIPWIRIHY-- 241

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
           ++P  ++D +I+A  D   ++PY  LP+Q     +LKSMNR   A     I+++IR   P
Sbjct: 242 AYPTGLTDEVIRAFKDSKNIVPYFDLPLQHSHPDVLKSMNRPWQASLNESILEKIREEIP 301

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
              + +  IVGFPGE  + F   +  +D+  +     F +SP  GT   ++  +V   V 
Sbjct: 302 SAVLRTSLIVGFPGEKKEHFEHLLQFLDRHKFDHVGVFIFSPEEGTAAFHLPNKVSPEVA 361

Query: 388 AER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVL 440
             R   ++ +Q+ +  ++   N   VG  +++++E+   +  +L+GRS    P +   V+
Sbjct: 362 EARKDNVISVQQNISREK---NQIYVGSKMKIMVEQIS-DNNELIGRSYNFAPEIDGTVI 417

Query: 441 NS-------KNHNIGDIIKVRITDVKISTLYGELV 468
            S       KN+ IG  ++  I+      LYGE +
Sbjct: 418 LSVKEKIDLKNY-IGKFVEANISFADEYDLYGETI 451


>gi|157412457|ref|YP_001483323.1| Fe-S oxidoreductase [Prochlorococcus marinus str. MIT 9215]
 gi|238066594|sp|A8G2A6|RIMO_PROM2 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|157387032|gb|ABV49737.1| possible Fe-S oxidoreductase [Prochlorococcus marinus str. MIT
           9215]
          Length = 454

 Score =  184 bits (468), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 127/457 (27%), Positives = 237/457 (51%), Gaps = 52/457 (11%)

Query: 33  GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHI----REKAAEKVYSFLGRIR 88
           GC+ N+ D+  M+ +   +GYE  +++++A+++V+NTC      RE++  K+  +  + +
Sbjct: 22  GCEKNLVDTEHMQGLLDKEGYEVDSNINEANVVVVNTCSFIQTAREESIRKILEYTNQGK 81

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
                         V+VAGC+AQ   +E+++  P +  ++G   Y ++ ++L+R   G+ 
Sbjct: 82  E-------------VIVAGCMAQHFKDELIKEIPEIKGLIGTGDYQKIAKVLDRVEKGEI 128

Query: 149 VVDT----DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
           V +     ++  +++  R   VD     K    A+L I EGC+  C FC++P  RG + S
Sbjct: 129 VNEVSKIPEFIADEEIPRF--VD-----KNKFVAYLRIAEGCNYNCAFCIIPKLRGPQRS 181

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK-GLVRL 263
           R++  +V EA+ L   G+ EI L+ Q +    G+ + G K + + LL  LS++    +R+
Sbjct: 182 RTIESIVSEAKSLAKQGIQEIILISQ-ITTNYGQDIYG-KPSLAKLLNELSKVPIPWIRI 239

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
            Y  ++P  ++D +I+A  D   ++PY  LP+Q     +LKSMNR   A     I+++IR
Sbjct: 240 HY--AYPTGLTDQVIRAFKDSKNIVPYFDLPLQHSHPDVLKSMNRPWQASLNESILEKIR 297

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              P   + +  IVGFPGE  + F   ++ +D+  +     F +SP +GT   ++  +V 
Sbjct: 298 EEIPSAVLRTSLIVGFPGEKKEHFEHLLEFLDRHKFDHVGVFIFSPEVGTAAFDLPNKVS 357

Query: 384 ENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQ 436
             V   R   ++ +Q+ + + +   N + VG  +++L+EK   +  +L+GRS    P + 
Sbjct: 358 PEVAEARKDNVISVQQNISKDK---NQSYVGSKMKILVEKIS-DNNELIGRSYNFAPEID 413

Query: 437 SVVLNS-------KNHNIGDIIKVRITDVKISTLYGE 466
             V+ S       KN++ G  ++  I+      LYGE
Sbjct: 414 GTVILSVKDKIDLKNYS-GKFVEANISFADEYDLYGE 449


>gi|325109974|ref|YP_004271042.1| 30S ribosomal protein S12P methylthiotransferase [Planctomyces
           brasiliensis DSM 5305]
 gi|324970242|gb|ADY61020.1| SSU ribosomal protein S12P methylthiotransferase [Planctomyces
           brasiliensis DSM 5305]
          Length = 474

 Score =  184 bits (468), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 127/449 (28%), Positives = 222/449 (49%), Gaps = 21/449 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           Q  FV S GC  N+ DS +M       GY   +    +D +++NTC   + + ++    +
Sbjct: 27  QYAFV-SLGCPKNLVDSEKMLGTLAVDGYSLTSEPAGSDFVIVNTCGFIDSSRQESIETI 85

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             +  LK     +G    V+VAGC+ +  G E+  R P ++ +VG   + R     E ++
Sbjct: 86  EEMLELKRQGKTKG----VIVAGCLPERIGPELRERLPEIDHIVG--VFGRD----EISK 135

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT----AFLTIQEGCDKFCTFCVVPYTRG 200
              R+V       D F    I       +  +T    A+L I EGC++ CTFC +P  RG
Sbjct: 136 VADRLVGHINEQRDLFRPAPIRALDDRARLRITPQHFAYLKISEGCNRTCTFCSIPKMRG 195

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
             +++ +  VV+EAR+L  +GV E+ L+ Q+   + G  L GE    +DLL  L +++G+
Sbjct: 196 KHVTKPIEAVVEEARELAADGVKELILVAQDTTYY-GMDLYGE-VRLTDLLGELEKVEGI 253

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
             +R    +P + +D LI    +   ++PYL +P+Q  + R+LK M RR    +  ++++
Sbjct: 254 DWIRLMYLYPINFTDALIDRIANSSKILPYLDMPLQHINSRVLKRMQRRINQEKTYELVE 313

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R   P++ + + F+VGFPGETD+ F    + V    + +   F YS   GTP   +  
Sbjct: 314 KLRERVPNLVLRTTFVVGFPGETDEQFEELREFVKATRFQRMGVFPYSLEPGTPAEKLDG 373

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK---GKLVGRSPWLQ- 436
            + E VK +R+  L    +E    F ++ VG  ++VLI++H  +    G+    +P +  
Sbjct: 374 HLPEEVKQQRVDTLMADQQEIAFEFGESLVGYELDVLIDEHVGDNVWMGRTFADAPEIDG 433

Query: 437 SVVLNSKNHNIGDIIKVRITDVKISTLYG 465
           +V +  +   +G+   V I   +   L G
Sbjct: 434 AVYVQGEGLTVGEFTPVEIVGTQDYDLIG 462


>gi|319783553|ref|YP_004143029.1| MiaB-like tRNA modifying enzyme YliG [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317169441|gb|ADV12979.1| MiaB-like tRNA modifying enzyme YliG [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 437

 Score =  184 bits (468), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 151/465 (32%), Positives = 225/465 (48%), Gaps = 49/465 (10%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
            P+  FV S GC   + DS R+     ++GYE     D ADL+V+NTC   + A ++  +
Sbjct: 3   APRVSFV-SLGCPKALVDSERIITRLRAEGYEIARKHDGADLVVVNTCGFLDSARDESLN 61

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +G       S + E G   V+V GC+  AE + I  + P V  + GPQ Y  +   +  
Sbjct: 62  AIG-------SALSENGR--VIVTGCLG-AEPDVIREKHPNVLAITGPQAYESVMAAVHE 111

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           A              D +  L    G     R   A+L I EGC+  CTFC++P  RG  
Sbjct: 112 AA---------PPSHDPYIDLLPPQGVKLTPRHY-AYLKISEGCNNRCTFCIIPALRGDL 161

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE-----------KCTFSDLL 251
           +SR  + V+ EA KL   GV E+ ++ Q+ +A+   G+D +           +  F DL 
Sbjct: 162 VSRPAADVLREAEKLAKAGVKELLVISQDTSAY---GIDIKYQTSMFGDREVRAKFLDLS 218

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
             L ++   VR+ Y   +P       + A G +   +PYL +P Q  S ++LK+M R   
Sbjct: 219 EELGKLGIWVRMHYVYPYPHVADVIPLMAEGKI---LPYLDIPFQHASPQVLKNMRRPAH 275

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
             +  + I   R V PD+AI S FIVGFPGETDDDF   +D +D+    +A  FKY P  
Sbjct: 276 GEKTLERIRGWREVCPDLAIRSTFIVGFPGETDDDFEMLLDWLDEAKIDRAGCFKYEPVR 335

Query: 372 GTPGSNM-LEQVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHG-KEK 425
           G   +++ LEQV + +K     R +  Q+K+   Q++     VG+ + VLI E HG   K
Sbjct: 336 GARSNDLGLEQVPQEIKEARWHRFMQRQQKISATQLARK---VGKRLPVLIDEAHGTSAK 392

Query: 426 GKLVGRSPWLQ-SVVLNSKNH-NIGDIIKVRITDVKISTLYGELV 468
           G+    +P +  SV + S+     GDI+ V+I       LYG  V
Sbjct: 393 GRTKYDAPEIDGSVHIQSRRPLRQGDIVTVKIDRADAYDLYGSAV 437


>gi|219871680|ref|YP_002476055.1| ribosomal protein S12 methylthiotransferase [Haemophilus parasuis
           SH0165]
 gi|219691884|gb|ACL33107.1| MiaB-like tRNA modifying enzyme YliG [Haemophilus parasuis SH0165]
          Length = 443

 Score =  184 bits (468), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 141/464 (30%), Positives = 223/464 (48%), Gaps = 47/464 (10%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
            P   FV S GC  N+ DS R+     S GY  ++S + ADL+++NTC   + A ++   
Sbjct: 4   APNIGFV-SLGCPKNLVDSERILTELRSDGYNIISSYEGADLVIVNTCGFIDSAEQESLE 62

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +G                 V+V GC+   E + I    P V  + GP +Y  +      
Sbjct: 63  SIGEALEANGK---------VIVTGCLGAKENQ-IREVHPKVLEITGPHSYEAV-----M 107

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
               K V   +Y+       +S+V   G        A+L I EGCD  CTFC++P  RG 
Sbjct: 108 KHVHKYVPKPEYN-----PYVSLVPKQGIKLTPKHYAYLKISEGCDHRCTFCIIPSMRGD 162

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR--GKGLDGEKCTFSD---------- 249
             SR + QV+DEA++L+D+GV E+ ++ Q+ +A+    K  +G K  F +          
Sbjct: 163 LDSRPIVQVLDEAKRLVDSGVKELLIVSQDTSAYALDKKKEEGTKTVFWNGMPIKNNLIT 222

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
           L   L  +   +RL Y   +P       + A G L   +PYL +P+Q  S +ILK+M R 
Sbjct: 223 LCEQLGSMGVWIRLHYVYPYPHVDDLIPLMAQGKL---LPYLDIPLQHASPKILKAMKRP 279

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369
            +     + I + R + PD+ + S FIVGFPGET++DF+  +D + +    +   FK+SP
Sbjct: 280 GSIDRTLERIKKWREICPDLTLRSTFIVGFPGETEEDFQMLLDFLKEAQLDRVGCFKFSP 339

Query: 370 RLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFN--DACVGQIIEVLIEKHGKEK-- 425
             G   + M +QV E VK ER     +   +QQ+S +     +G+ + V++++  KE   
Sbjct: 340 VDGAVATEMEDQVPEEVKEERFHRFMQ--LQQQISADRLQQKIGRPLSVIVDEIDKEGII 397

Query: 426 GKLVGRSPWLQSVV----LNSKNHNIGDIIKVRITDVKISTLYG 465
           G+ +  +P +  VV    L+     +G II V IT      L+G
Sbjct: 398 GRSMADAPEIDGVVYVDNLSGAEVKVGQIISVTITQADEYDLWG 441


>gi|313676026|ref|YP_004054022.1| SSU ribosomal protein s12p methylthiotransferase [Marivirga
           tractuosa DSM 4126]
 gi|312942724|gb|ADR21914.1| SSU ribosomal protein S12P methylthiotransferase [Marivirga
           tractuosa DSM 4126]
          Length = 436

 Score =  184 bits (468), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 141/453 (31%), Positives = 220/453 (48%), Gaps = 44/453 (9%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNS--MDDADLIVLNTCHIREKAAEKVYSFLGR 86
           V + GC  N+ DS  M         +  +    DD+++IV+NTC   + A ++    + R
Sbjct: 13  VVTLGCSKNLVDSEVMITQLRGNSIDVTHESDKDDSNIIVVNTCGFIDNAKQESIDTILR 72

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
             + K   I E     + V GC++Q   +++ +  P V+   G      LP LL++    
Sbjct: 73  YADAKEEGIIEK----LYVTGCLSQRYKDDLEKEIPQVDAFFGTM---ELPMLLKK---- 121

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
               + DY  E   ER++     +       A++ I EGCD+ C+FC +P  RG  +SR 
Sbjct: 122 ---FNADYKHELVGERITTTANHF-------AYMKIAEGCDRPCSFCAIPIMRGKHVSRP 171

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGL--VRL 263
           + ++V EA+ +  NG  EI L+ Q+   +   GLD  +K   ++LL  LS+++G+  +RL
Sbjct: 172 IEELVKEAKNMARNGTKEILLIAQDSTYY---GLDIYKKRNLAELLRQLSDVEGIEWIRL 228

Query: 264 RYT--TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
            Y   T  P D+ D +     + D +  YL +P+Q GS ++LK M R  T  +   +I R
Sbjct: 229 HYAFPTGFPEDILDVM----AERDNICNYLDMPLQHGSTKMLKMMRRGTTHEKQAALIKR 284

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           IR   P IA+ +  I G PGET++DF+  MD V    + +   F YS    T   +  + 
Sbjct: 285 IREKVPGIALRTTLIAGHPGETEEDFQEMMDFVRDTRFDRLGIFPYSHEENTHAYSFEDD 344

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQS 437
           V E +K ER   + +   +     N   +G+  +VLI+K  KE G  VGR    SP + +
Sbjct: 345 VPEEIKQERADAVMELQTQISHELNQEKIGKTFKVLIDK--KEGGFFVGRTEHDSPEVDN 402

Query: 438 VVLNSKNHN---IGDIIKVRITDVKISTLYGEL 467
            VL     N   IGD + V ITD     LYG L
Sbjct: 403 EVLIDATENYVRIGDFVDVEITDATEFDLYGNL 435


>gi|168240726|ref|ZP_02665658.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|194448215|ref|YP_002044882.1| ribosomal protein S12 methylthiotransferase [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|238066590|sp|B4TCV0|RIMO_SALHS RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|194406519|gb|ACF66738.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|205339895|gb|EDZ26659.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
          Length = 441

 Score =  184 bits (467), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 140/462 (30%), Positives = 233/462 (50%), Gaps = 45/462 (9%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  FV S GC  N+ DS R+     ++GY+ V   DDAD++++NTC   + A ++    
Sbjct: 8   PKIGFV-SLGCPKNLVDSERILTELRTEGYDVVPRYDDADMVIVNTCGFIDSAVQESLEA 66

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G   N       E G   V+V GC+   E ++I    P V  + GP +Y ++ + +   
Sbjct: 67  IGEALN-------ENGK--VIVTGCLGAKE-DQIREVHPKVLEITGPHSYEQVLQHVHH- 115

Query: 144 RFGKRVVDTDYSVEDKFER-LSIV-DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
                     Y  + K    LS+V + G        A+L I EGC+  CTFC++P  RG 
Sbjct: 116 ----------YVPKPKHNPFLSLVPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGD 165

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYS 253
            +SR +  V+ EA++L+D GV EI ++ Q+ +A+      R    +GE  K +   L   
Sbjct: 166 LVSRPIGDVLSEAKRLVDAGVKEILVISQDTSAYGVDVKHRTGFHNGEPVKTSMVSLCEQ 225

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
           LS++    RL Y   +P       + A G +   +PYL +P+Q  S RILK M R  +  
Sbjct: 226 LSKLGVWTRLHYVYPYPHVDDVIPLMAEGKI---LPYLDIPLQHASPRILKLMKRPGSVD 282

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
                I + R + P++ + S FIVGFPGET++DF+  +D + +    +   FKYSP  G 
Sbjct: 283 RQLARIKQWREICPELTLRSTFIVGFPGETEEDFQMLLDFLKEARLDRVGCFKYSPVEGA 342

Query: 374 PGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKL 428
             +++  QV E VK E   R + LQ+++  +++      VG+ I V++++  +E   G+ 
Sbjct: 343 GANDLPAQVPEEVKEERWNRFMQLQQQISAERLQEK---VGREILVIVDEVDEEGAIGRS 399

Query: 429 VGRSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468
           +  +P +   V  +   N+  GDI++V++ +     L+G  V
Sbjct: 400 MADAPEIDGAVYLNGETNVKPGDIVRVKVENADEYDLWGSRV 441


>gi|189500918|ref|YP_001960388.1| MiaB-like tRNA modifying enzyme [Chlorobium phaeobacteroides BS1]
 gi|189496359|gb|ACE04907.1| MiaB-like tRNA modifying enzyme [Chlorobium phaeobacteroides BS1]
          Length = 451

 Score =  184 bits (467), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 142/458 (31%), Positives = 230/458 (50%), Gaps = 33/458 (7%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +R F  + GC++N  ++  +   F   G+E  +S D  DLI+++TC +  +A +K     
Sbjct: 8   KRVFAITLGCKLNYAETSSILARFVKNGWEIADSDDIPDLIIIHTCAVTSQAGQKSRQ-- 65

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL----L 140
            +IR +    IK+     + V GC AQ   + +      V+V++G +  Y +PE     +
Sbjct: 66  -QIRKM----IKKYPLSRIAVTGCYAQMYPDSV-ETIDGVHVILGVREKY-IPEKYIKDV 118

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT-AFLTIQEGCDKFCTFCVVPYTR 199
           + A +  R V +  +++D     S+++    R++G T AFL IQ+GCD  C +C +P  R
Sbjct: 119 QEAVY--REVASPETIKDAEPAHSLIE---KREKGRTRAFLKIQDGCDYACAYCTIPLAR 173

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G   S  L  V+  A +L + G  EI L G N+  +R       + TF DLL  L  +  
Sbjct: 174 GKSRSVPLETVLAGAVRLAEAGYREIVLTGVNIADYRSG-----RNTFVDLLLELESVD- 227

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           + R+R ++  P  +SD LI        +MP+ HLP+QSGSD IL +M RR++A  YR+ +
Sbjct: 228 VSRIRISSIEPDILSDRLIDTVASSSKIMPHFHLPLQSGSDAILAAMRRRYSATGYRERL 287

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP----- 374
            +  S  P  A+ +D I G+PGET+ DF AT  L++ I  A    F  S R GT      
Sbjct: 288 MKAVSAIPHCAVGADVITGYPGETESDFMATFRLLESIPAAYLHVFTCSLRPGTQLSGQV 347

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKH---GKEKGKLVGR 431
            S + + V   V  ER   L     ++Q  +    +G+ ++VL E+H     EKG + G 
Sbjct: 348 SSGLRQSVSSAVSRERSRLLLDLAEKKQREYASCYLGKTLDVLFEEHRGVKGEKGTVSGY 407

Query: 432 SPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
           SP    V  ++++  +   I  R   V I  +  +L++
Sbjct: 408 SPNYLRVRCHTESSALATDIVGRERRVIIENMNEDLIL 445


>gi|13470719|ref|NP_102288.1| ribosomal protein S12 methylthiotransferase [Mesorhizobium loti
           MAFF303099]
 gi|75544062|sp|Q98MN9|RIMO_RHILO RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|14021462|dbj|BAB48074.1| mlr0499 [Mesorhizobium loti MAFF303099]
          Length = 437

 Score =  184 bits (467), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 151/465 (32%), Positives = 226/465 (48%), Gaps = 49/465 (10%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
            P+  FV S GC   + DS R+     ++GYE     D ADL+V+NTC   + A ++  +
Sbjct: 3   APRVSFV-SLGCPKALVDSERIITRLRAEGYEIARKHDGADLVVVNTCGFLDSARDESLN 61

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +G       S + E G   V+V GC+  AE + I  + P V  + GPQ Y  +   +  
Sbjct: 62  AIG-------SALSENGR--VIVTGCLG-AEPDVIREKHPNVLAITGPQAYESVMAAVHE 111

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           A              D +  L    G     R   A+L I EGC+  CTFC++P  RG  
Sbjct: 112 AA---------PPSHDPYIDLLPPQGVKLTPRHY-AYLKISEGCNNRCTFCIIPALRGDL 161

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE-----------KCTFSDLL 251
           +SR  + V+ EA KL   GV E+ ++ Q+ +A+   G+D +           +  F DL 
Sbjct: 162 VSRPAADVLREAEKLAKAGVKELLVISQDTSAY---GIDIKYQTSMFGDREVRAKFLDLS 218

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
             L ++   VR+ Y   +P       + A G +   +PYL +P Q  S ++LK+M R   
Sbjct: 219 EELGKLGIWVRMHYVYPYPHVADVIPLMAEGKI---LPYLDIPFQHASPQVLKNMRRPAH 275

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
             +  + I   R V PD+AI S FIVGFPGETD+DF   +D +D+    +A  FKY P  
Sbjct: 276 GEKTLERIRGWRDVCPDLAIRSTFIVGFPGETDEDFEMLLDWLDEAKIDRAGCFKYEPVK 335

Query: 372 GTPGSNM-LEQVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKE-K 425
           G   +++ LEQV ++VK     R +  Q+K+   Q++     VG+ + VLI E HG   K
Sbjct: 336 GARSNDLGLEQVPQDVKEARWHRFMQRQQKISATQLAKK---VGKRLPVLIDEAHGTSAK 392

Query: 426 GKLVGRSPWLQ-SVVLNSKNH-NIGDIIKVRITDVKISTLYGELV 468
           G+    +P +  SV + S+     GDI+ V+I       LYG  V
Sbjct: 393 GRTKYDAPEIDGSVHIQSRRPMRAGDIVTVKIERADAYDLYGSAV 437


>gi|261350294|ref|ZP_05975711.1| putative 2-methylthioadenine synthetase [Methanobrevibacter smithii
           DSM 2374]
 gi|288861078|gb|EFC93376.1| putative 2-methylthioadenine synthetase [Methanobrevibacter smithii
           DSM 2374]
          Length = 426

 Score =  184 bits (467), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 132/447 (29%), Positives = 232/447 (51%), Gaps = 28/447 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + ++ +YGC  N  D+  M  +      + V+S + AD+I++NTC+++     KV   + 
Sbjct: 2   KVYIDTYGCTFNKADAQIMGGVLKENHIDLVDSPELADVIIVNTCYVKLPTENKV---VY 58

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           +I+ L+    ++  D  V+V+GC+ + + E++ + +P  + + GP    +  +++     
Sbjct: 59  KIQQLQ----EKFPDKKVIVSGCMVEIDPEKLEKVAPDCSWI-GPHQLNKTADVVNGTYC 113

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G+ + +  +S + K     + DG       +   + I EGC   CTFC   + RG   S 
Sbjct: 114 GRVIRECGFSKDSKVGVPKVSDGS------LIHIIQIAEGCLGACTFCCTRFARGPLNSY 167

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLR 264
            +  +V EA+K ID+G  EI L  Q+  A+   G D GEK   SDL+  ++ + G  R+R
Sbjct: 168 PIKDIVAEAKKAIDDGAVEIQLTAQDTAAF---GYDSGEK--LSDLIKEVANLDGEFRVR 222

Query: 265 YTTSHPRDM---SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
               HP+D+    D +I A     V   ++HLPVQ+GS+++L  M R HT  +Y  I+ +
Sbjct: 223 VGMMHPKDILNNVDEIIDAIKHPKVYN-FIHLPVQTGSNKVLSEMRRGHTLDQYLDIVSK 281

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
            +S  PD+ ++ D IVG+P E+D+DF+ T+DL+  I  +     KY  R G   S+ L++
Sbjct: 282 FKSEIPDLTLAVDIIVGYPTESDEDFQLTVDLLRNIKPSLIHLSKYQHRKGAVSSS-LKE 340

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           +   V  +R   L +   E     N   VG +   ++ + G  KG  + ++     V+++
Sbjct: 341 IPHEVMKKRSRNLSRIKTEITEEENKELVGSVQNAVVVEVG-SKGGFIAKTDSYIPVIVD 399

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
               N+GD IKV+ITD   + L G++V
Sbjct: 400 GV--NLGDFIKVKITDATATYLKGDVV 424


>gi|239627763|ref|ZP_04670794.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239517909|gb|EEQ57775.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 460

 Score =  184 bits (467), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 128/437 (29%), Positives = 213/437 (48%), Gaps = 35/437 (8%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           + + GC++N Y++  M+      GY+ V   + AD+ ++NTC +   A  K    L R +
Sbjct: 6   LHNLGCKVNAYEAEAMQQQLREHGYDIVPFDEKADVYIINTCSVTNVADRKSRQMLHRAK 65

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
            L    +       VV AGC  Q   +  L+    V+V++G     +L ++L+    G+ 
Sbjct: 66  KLNPESV-------VVAAGCYVQVAAD-TLKEDACVDVIIGNNKKGQLVQILDEYMEGRL 117

Query: 149 VVDT---------DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
             D          D    D++E L +     N +    AF+ +Q+GC++FC++C++PY R
Sbjct: 118 KEDEGPKSGIHVLDIGGTDEYEPLHVD----NIEDHTRAFIKVQDGCNQFCSYCIIPYAR 173

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG--------EKCTFSDLL 251
           G   SR    V  E   L+  G  E+ L G +++++  +  +G        +     DL+
Sbjct: 174 GRVRSRKPEDVEAEVEGLVARGYKEVVLTGIHLSSYGMEHREGGPVQGGNWDHGPLLDLI 233

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
             +  I GL R+R  +  PR +++   +A   L    P+ HL +QSG D  LK MNR +T
Sbjct: 234 GRIHRIPGLERIRLGSLEPRIITEEFAEALAGLAKFCPHFHLSLQSGCDATLKRMNRHYT 293

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
             +Y +    +R      AI++D IVGFPGET ++F  T + + K+ + +   FKYS R 
Sbjct: 294 TEDYLRRCGILRKWFDHPAITTDVIVGFPGETQEEFEITREFLKKVHFYEMHVFKYSKRA 353

Query: 372 GTPGSNMLEQVDENVKAER---LLCLQKKL-REQQVSFNDACVGQIIEVLIEKHGKEKGK 427
           GT  + M +QV E VKA+R   LL L+  + RE +  F  + V  + E + E  G++   
Sbjct: 354 GTKAALMPDQVPEQVKAQRSDVLLELEASMSREYREHFAGSRVSVLFEDVAEVDGRK--Y 411

Query: 428 LVGRSPWLQSVVLNSKN 444
           + G +P      L  K+
Sbjct: 412 ITGHTPQYVKAALPVKD 428


>gi|197263566|ref|ZP_03163640.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|197241821|gb|EDY24441.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
          Length = 441

 Score =  184 bits (467), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 140/462 (30%), Positives = 232/462 (50%), Gaps = 45/462 (9%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  FV S GC  N+ DS R+     ++GY+ V   DDAD++++NTC   + A ++    
Sbjct: 8   PKIGFV-SLGCPKNLVDSERILTELRTEGYDVVPRYDDADMVIVNTCGFIDSAVQESLEA 66

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G   N       E G   V+V GC+   E ++I    P V  + GP +Y ++ + +   
Sbjct: 67  IGEALN-------ENGK--VIVTGCLGAKE-DQIREVHPKVLEITGPHSYEQVLQHVHH- 115

Query: 144 RFGKRVVDTDYSVEDKFER-LSIV-DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
                     Y  + K    LS+V + G        A+L I EGC+  CTFC++P  RG 
Sbjct: 116 ----------YVPKPKHNPFLSLVPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGD 165

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYS 253
            +SR +  V+ EA++L+D GV EI ++ Q+ +A+      R    +GE  K +   L   
Sbjct: 166 LVSRPIGDVLSEAKRLVDAGVKEILVISQDTSAYGVDVKHRTGFHNGEPVKTSMVSLCEQ 225

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
           LS++    RL Y   +P       + A G +   +PYL +P+Q  S RILK M R  +  
Sbjct: 226 LSKLGVWTRLHYVYPYPHVDDVIPLMAEGKI---LPYLDIPLQHASPRILKLMKRPGSVD 282

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
                I + R + P++ + S FIVGFPGET++DF+  +D + +    +   FKYSP  G 
Sbjct: 283 RQLARIKQWREICPELTLRSTFIVGFPGETEEDFQMLLDFLKEARLDRVGCFKYSPVEGA 342

Query: 374 PGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKL 428
             + + +QV E VK E   R + LQ+++  +++      VG+ I V+++   +E   G+ 
Sbjct: 343 GANELPDQVPEEVKEERWNRFMQLQQQISAERLQEK---VGREILVIVDDVDEEGAIGRS 399

Query: 429 VGRSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468
           +  +P +   V  +   N+  GDI++V++ +     L+G  V
Sbjct: 400 MADAPEIDGAVYLNGETNVKPGDIVRVKVENADEYDLWGSRV 441


>gi|302874938|ref|YP_003843571.1| MiaB-like tRNA modifying enzyme YliG [Clostridium cellulovorans
           743B]
 gi|307690444|ref|ZP_07632890.1| MiaB-like tRNA modifying enzyme YliG [Clostridium cellulovorans
           743B]
 gi|302577795|gb|ADL51807.1| MiaB-like tRNA modifying enzyme YliG [Clostridium cellulovorans
           743B]
          Length = 445

 Score =  184 bits (467), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 130/434 (29%), Positives = 215/434 (49%), Gaps = 21/434 (4%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC-HIREKAAEKVYSFLGRIRN 89
           S GC  N  DS  +     S+GYE  N  ++AD+I++NTC  I     E + + L   + 
Sbjct: 10  SLGCDKNRIDSEIILSKL-SEGYEITNEENEADIIIVNTCGFIETSKQESINAILEMAKY 68

Query: 90  LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149
             N   K     ++V  GC+ Q  G E+L   P ++ ++G   Y RL   +E    G  +
Sbjct: 69  KTNYSCK-----VLVATGCLTQRYGSELLELIPELDFILGVNDYDRLKSFIEEKISGNTI 123

Query: 150 -VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
               +YS  +  E   I+  G       TA+L I EGC   C++C++P  RG   SR+  
Sbjct: 124 ETKINYSDSNINEGKRILTTGKQ-----TAYLRISEGCSNNCSYCIIPRIRGKYRSRTKE 178

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYTT 267
            ++ EA  L+ +GV E+ L+ Q+   +   G+D   K    +LL  LS+IKG+  +R   
Sbjct: 179 SILKEAEDLVSSGVKELILVAQDTTRY---GIDIYNKKVLHELLRDLSKIKGIKWIRILY 235

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
            +P ++ D LI    + +++  YL +P+Q  S+ IL++M RR      ++ I  ++   P
Sbjct: 236 CYPEEIYDELIDEIANNEIICNYLDIPIQHISNNILRAMRRRTKKEIIKERISAMKERIP 295

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
            + + +  IVGFPGET++DF+   D V +I + +   FKYS    T  + +  Q+ + +K
Sbjct: 296 SLILRTSIIVGFPGETEEDFQELKDFVKEIKFDKLGVFKYSQEEDTDAAKLGNQIPDEIK 355

Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE--KGKLVGRSPWLQSVVL--NSK 443
            ER   L    +E     N   +G++ EV++E    E   G+    SP +   V     +
Sbjct: 356 EEREKTLMLIQQEVSAEVNTNKIGRVYEVIVEDKDVEYYYGRSFETSPEIDGEVFIKPDR 415

Query: 444 NHNIGDIIKVRITD 457
           +  IG+ +KV+I D
Sbjct: 416 DLKIGEFVKVKIVD 429


>gi|326335995|ref|ZP_08202171.1| 2-methylthioadenine synthetase [Capnocytophaga sp. oral taxon 338
           str. F0234]
 gi|325691792|gb|EGD33755.1| 2-methylthioadenine synthetase [Capnocytophaga sp. oral taxon 338
           str. F0234]
          Length = 438

 Score =  184 bits (467), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 124/435 (28%), Positives = 218/435 (50%), Gaps = 34/435 (7%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +R    + GC++N  ++  +   F ++G+++V+  + AD+ V+NTC + E A +      
Sbjct: 3   KRVAFYTLGCKLNFAETATIARSFENEGFDKVDFEEPADIYVINTCSVTENADK------ 56

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER-A 143
            + + +    +K   +  +   GC AQ + E+++     V++V+G +  + + + ++   
Sbjct: 57  -QFKQIVRKALKHNENAFIAAIGCYAQLKPEDLIAVDG-VDLVLGAKEKFNITQYIDDLT 114

Query: 144 RFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           +  K +V   D +  D +       G Y+      AFL IQ+GCD  CT+C +P  RGI 
Sbjct: 115 KLNKGQVHSCDINEADFYV------GSYSIGDRTRAFLKIQDGCDYKCTYCAIPMARGIS 168

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK---CTFSDLLYSLSEIKG 259
            S ++  ++  A+K+ +N + EI L G N+  + GKG  G K    TF +L+ +L  ++G
Sbjct: 169 RSDTIENILKNAKKISENNIKEIVLTGVNIGDY-GKGEFGNKKHEHTFLELIQALDTVEG 227

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           + RLR ++  P  + D  I         +P+ H+P+QSGS+ ILK M RR+    Y+  +
Sbjct: 228 IERLRISSIEPNLLKDETIAFVAQSRSFVPHFHIPLQSGSNDILKKMKRRYLRELYQNRV 287

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            +I+   PD  I  D IVGFPGETD+ F  T   ++++  +    F YS R  T    M 
Sbjct: 288 AKIKEEMPDACIGVDVIVGFPGETDEHFLETYHFLNELDISYLHVFTYSERDNTEAVKME 347

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-------HGKEKGKLVGRS 432
             V   ++A+R   L+    +++  F +  +G   +VL E        HG  +  +  ++
Sbjct: 348 GVVPSEIRAKRSRMLRGLSAKKRHYFYEKQLGTTHKVLFESDNKDGFMHGFTENYVKVKT 407

Query: 433 PW-------LQSVVL 440
           PW       LQ VVL
Sbjct: 408 PWNPNLINTLQPVVL 422


>gi|257453136|ref|ZP_05618435.1| Fe-S oxidoreductase [Fusobacterium sp. 3_1_5R]
 gi|317059671|ref|ZP_07924156.1| Fe-S oxidoreductase [Fusobacterium sp. 3_1_5R]
 gi|313685347|gb|EFS22182.1| Fe-S oxidoreductase [Fusobacterium sp. 3_1_5R]
          Length = 436

 Score =  184 bits (467), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 133/446 (29%), Positives = 235/446 (52%), Gaps = 30/446 (6%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +R    + GC++N Y+S  +++    +GYE V+    AD+ ++N+C +   A  K  + L
Sbjct: 5   KRVAFYTLGCKVNQYESESIKNQLLQKGYEEVDFESIADIYIVNSCTVTSIADRKTRNML 64

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R +       K+     V+V GC A+   +++L    I + V+G +    + + ++   
Sbjct: 65  RRAK-------KQNPSGKVIVTGCYAETNRKDLLEMEEI-DFVIGNKDKSAVAKFVQEIH 116

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT-AFLTIQEGCDKFCTFCVVPYTRGIEI 203
             +RV       E  F+     +  +   R +T A++ IQ+GC++FC++C +P+ RG   
Sbjct: 117 TQERVEKK----ESIFQEKEYQEYEFATFREMTRAYVKIQDGCNEFCSYCKIPFARGKSR 172

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR   +V++E  KL+  G  EI L+G N+  + GK L+G+  +F  L+  + +   L R+
Sbjct: 173 SRKQEKVLEEIDKLLMEGFQEIILIGINLGDY-GKDLEGD-ISFETLVQEILKRDLLKRV 230

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R  + +P  +++  I    +   +MP+LH+ +QS  D +LK+M R+   Y    I++ + 
Sbjct: 231 RIGSVYPDRITNSFISLFENPK-MMPHLHISLQSCDDTVLKNMKRK---YGRELILNSLL 286

Query: 324 SVR---PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           S+R   P +  ++D IVGFPGET++ F+ T   +++IG++    F YS R GT  S M  
Sbjct: 287 SLREKVPSMEYTADIIVGFPGETEEMFQNTYASLEEIGFSHLHIFPYSDREGTLASRMKN 346

Query: 381 QVDENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQS 437
           ++   +K ER   L  LQKK+ E +     A +G+ IEVLIE+  ++ G   G SP    
Sbjct: 347 KLSPEIKKERVTILENLQKKVEEDR---RKAYLGKTIEVLIEE--EKDGYWWGYSPNYLR 401

Query: 438 VVLNSKNHNIGDIIKVRITDVKISTL 463
           V +   N ++  +I+V I  V+   L
Sbjct: 402 VKIKGDNISVNSVIQVEIEKVEKGVL 427


>gi|330504051|ref|YP_004380920.1| ribosomal protein S12 methylthiotransferase [Pseudomonas mendocina
           NK-01]
 gi|328918337|gb|AEB59168.1| ribosomal protein S12 methylthiotransferase [Pseudomonas mendocina
           NK-01]
          Length = 440

 Score =  184 bits (467), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 149/473 (31%), Positives = 232/473 (49%), Gaps = 66/473 (13%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  FV S GC     DS R+      +GYE V +  DAD++V+NTC   + A  +    
Sbjct: 6   PKVGFV-SLGCPKATVDSERILTQLRMEGYEIVPTYQDADVVVVNTCGFIDSAKAESLDA 64

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G         + E G   V+V GC+  AE + I    P V  V GPQ Y          
Sbjct: 65  IGE-------ALAENGK--VIVTGCMGVAE-DSIRDVHPSVLAVTGPQQY---------- 104

Query: 144 RFGKRVVDTDYSV-EDKFERLSIVD----GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
              ++VV+  + V   K E   ++D     G        A+L I EGC+  C+FC++P  
Sbjct: 105 ---EQVVNAVHEVIPPKTEHNPLIDLVPPQGIKLTPRHYAYLKISEGCNHTCSFCIIPSM 161

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTF 247
           RG  +SR +  V+ EA +L+  GV E+ ++ Q+ +A           W G+ +   K   
Sbjct: 162 RGKLVSRPVGDVLSEAERLVKAGVKELLVISQDTSAYGVDLKYKLDFWNGQPV---KTRM 218

Query: 248 SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307
            +L  +LS +   VRL Y   +P       + A G    L+PYL +P Q  S ++LKSM 
Sbjct: 219 LELCETLSSMGVWVRLHYVYPYPNVDDVIPLMAAGK---LLPYLDIPFQHASPKVLKSMK 275

Query: 308 RRHTAYEYRQI--IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           R   A+E + +  I + R + P++ I S FIVGFPGET++DF+  +D + +    +   F
Sbjct: 276 R--PAFEDKTLARIKKWREICPELTIRSTFIVGFPGETEEDFQYLLDWLTEAQLDRVGCF 333

Query: 366 KYSPRLGTPGSNM-LEQVDENVKAERLLCLQKKLREQQVSFN---DACVGQIIEVLIEKH 421
           +YSP  G P +++ LE V ++VK ER    ++ +  QQ   +    A +G  ++VL+++ 
Sbjct: 334 QYSPVEGAPANDLGLEPVPDDVKQER---WERFMAHQQAISSARLQAKIGLEMDVLVDEV 390

Query: 422 GKEKGKLVGRSPWLQ------SVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
             E    V RS W        SV ++S +   GD ++VRI D     ++GELV
Sbjct: 391 DGEGA--VARS-WADAPEIDGSVFIDSTSVKPGDKVRVRIVDADEYDMWGELV 440


>gi|120555643|ref|YP_959994.1| MiaB-like tRNA modifying enzyme YliG [Marinobacter aquaeolei VT8]
 gi|238066389|sp|A1U488|RIMO_MARAV RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|120325492|gb|ABM19807.1| SSU ribosomal protein S12P methylthiotransferase [Marinobacter
           aquaeolei VT8]
          Length = 455

 Score =  184 bits (467), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 139/455 (30%), Positives = 218/455 (47%), Gaps = 43/455 (9%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC   + DS R+       GY+ V + DDAD++V+NTC   + A ++    +G     
Sbjct: 27  SLGCPKALVDSERILTQLRLDGYDVVPTYDDADIVVVNTCGFIDAAKQESLDAIGEA--- 83

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               I E G   V+V GC+   E + I    P V  V GP  Y  +   + +    ++  
Sbjct: 84  ----ISENGK--VIVTGCMG-VEADRIRETHPGVLAVSGPHAYEEVVGAVHQYVPPRKE- 135

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
                  D F  L    G     R   A+L I EGC+  CTFC++P  RG  +SR +  V
Sbjct: 136 ------HDPFLDLVPPQGVKLTPRHY-AYLKISEGCNHRCTFCIIPSMRGDLVSRPIGDV 188

Query: 211 VDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYSLSEIKG 259
           +DEA++L+D GV EI ++ Q+ +A           W+G+ +   K     L  +L E+  
Sbjct: 189 MDEAKRLVDAGVKEILVISQDTSAYGVDIKYRTGFWQGRPV---KTKMQALCEALGEMGV 245

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
            VRL Y   +P       + A G +   +PYL +P Q  S R+LK+M R     +  + I
Sbjct: 246 WVRLHYVYPYPHVDDIIPLMAEGKI---LPYLDIPFQHASPRVLKAMKRPAHDSKTLERI 302

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            + R + P++ I S FIVGFPGET++DF+  +D +D+    +  +F YS   G P + + 
Sbjct: 303 RKWREICPELTIRSTFIVGFPGETEEDFQYLLDWLDEAQLDRVGAFTYSAVEGAPANELE 362

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWL 435
             V E VK +RL     K  E   +   A +G+ I+VLI++  +E    +GRS    P +
Sbjct: 363 GAVPEEVKEKRLARFMAKQAEISAARLQAKIGRTIDVLIDEVDEEGA--IGRSKADAPEI 420

Query: 436 QSVV-LNSKNHNI-GDIIKVRITDVKISTLYGELV 468
             +V LN +   + G I++  +       L+  L+
Sbjct: 421 DGMVYLNDETELVPGQIVQAVVEHADEHDLWARLI 455


>gi|283784597|ref|YP_003364462.1| radical SAM superfamily protein [Citrobacter rodentium ICC168]
 gi|282948051|emb|CBG87615.1| radical SAM superfamily protein [Citrobacter rodentium ICC168]
          Length = 444

 Score =  184 bits (466), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 141/461 (30%), Positives = 233/461 (50%), Gaps = 43/461 (9%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  FV S GC  N+ DS R+     ++GY  V S DDAD++++NTC   + A ++    
Sbjct: 11  PKIGFV-SLGCPKNLVDSERILTELRTEGYNVVPSYDDADMVIVNTCGFIDSAVQESLEA 69

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G         + E G   V+V GC+   E ++I    P V  + GP +Y ++ E +   
Sbjct: 70  IGEA-------LSENGK--VIVTGCLGAKE-DQIREVHPKVLEITGPHSYEQVLEHVHHY 119

Query: 144 RFGKRVVDTDYSVEDKFERLSIV-DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
                         + F  LS+V + G        A+L I EGC+  CTFC++P  RG  
Sbjct: 120 --------VPKPQHNPF--LSLVPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGDL 169

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYSL 254
           +SR +  V+ EA++L+D GV EI ++ Q+ +A+      R    +GE  K +   L   L
Sbjct: 170 VSRPIGDVLSEAKRLVDAGVKEILVISQDTSAYGVDVKHRTGFYNGEPVKTSMVSLCEQL 229

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
           S++    RL Y   +P       + A G +   +PYL +P+Q  S RILK M R  +   
Sbjct: 230 SKLGIWTRLHYVYPYPHVDDVIPLMAEGKI---LPYLDIPLQHASPRILKLMKRPGSVDR 286

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
               I + R + P++ + S FIVGFPGET++DF+  +D + +    +   FKYSP  G  
Sbjct: 287 QLARIKQWREICPELTLRSTFIVGFPGETEEDFQMLLDFLKEARLDRVGCFKYSPVEGAG 346

Query: 375 GSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLV 429
            + + +QV E VK E   R + LQ+++  +++      VG+ I V++++  +E   G+ +
Sbjct: 347 ANELPDQVPEEVKEERWNRFMQLQQQISAERLQEK---VGREILVIVDEVDEEGAIGRSM 403

Query: 430 GRSPWLQ-SVVLNSKNH-NIGDIIKVRITDVKISTLYGELV 468
             +P +  +V LN +     GD+I+V++ +     L+G  V
Sbjct: 404 ADAPEIDGAVYLNGETRVKPGDVIRVKVENADEYDLWGSRV 444


>gi|260063207|ref|YP_003196287.1| hypothetical protein RB2501_00316 [Robiginitalea biformata
           HTCC2501]
 gi|88783301|gb|EAR14473.1| hypothetical protein RB2501_00316 [Robiginitalea biformata
           HTCC2501]
          Length = 476

 Score =  184 bits (466), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 134/442 (30%), Positives = 214/442 (48%), Gaps = 39/442 (8%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N  ++  +      QG  +V     ADL V+NTC + + A +       R R +
Sbjct: 43  TLGCKLNFAETSTIARDLVEQGLRKVEFGQPADLYVINTCSVTDNADK-------RCRAV 95

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               ++   +  V V GC AQ + EEI    P V++V+G    + L   L+     K  +
Sbjct: 96  VRQALRNNPEAFVAVVGCYAQLKPEEIAS-IPGVDLVLGATEKFNLTRYLDD--LSKNDM 152

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
              +S E +     +  G Y       AFL +Q+GCD  CT+C +P  RGI  S +L  V
Sbjct: 153 GEVHSCEIREADFYV--GSYAIGDRTRAFLKVQDGCDYKCTYCTIPLARGISRSDTLENV 210

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK---CTFSDLLYSLSEIKGLVRLRYTT 267
           ++ AR++   G+ EI L G N+  + GKG +G+K    TF DL+ +L ++ G+ R+R ++
Sbjct: 211 LENAREISARGIREIVLTGVNIGDY-GKGENGDKRHKHTFLDLVRALDDVPGIERVRISS 269

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
             P  + +  I         +P+ H+P+QSGS+ ILK M RR+    Y   + RIR V P
Sbjct: 270 IEPNLLKNETIDFVAGSRHFVPHFHIPLQSGSNSILKRMRRRYMRELYADRVARIREVMP 329

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM---LEQVDE 384
              I  D IVGFPGET+D F  T + + ++  +    F YS R  TP + M   +   + 
Sbjct: 330 HACIGVDVIVGFPGETEDHFMETYNFLHELEVSYLHVFTYSERADTPAAKMDGAVPPAER 389

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG--------RSPWLQ 436
           N +++ L  L  K R    +F    +     VL E   K KG + G        ++PW  
Sbjct: 390 NRRSKMLRSLSAKKRR---AFYQEQLDTEQTVLFEGENK-KGYIHGFTRNYVKVKAPWDP 445

Query: 437 SVVLNSKNHNIGDIIKVRITDV 458
           ++         G  ++VR+T++
Sbjct: 446 ALT--------GTTLRVRLTEI 459


>gi|149199462|ref|ZP_01876497.1| putative Fe-S oxidoreductase [Lentisphaera araneosa HTCC2155]
 gi|149137397|gb|EDM25815.1| putative Fe-S oxidoreductase [Lentisphaera araneosa HTCC2155]
          Length = 437

 Score =  184 bits (466), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 121/394 (30%), Positives = 202/394 (51%), Gaps = 22/394 (5%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V + GC++N  +S  ME     QG++ V+   ++++ ++NTC +  +A           R
Sbjct: 14  VYTLGCRLNQSESSVMEQGLKEQGFDIVDFKGESNIAIVNTCTVTARADSDC-------R 66

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
           N+  S I+   D  V V GC +Q  G + L     V++++G Q    + + ++  +  K 
Sbjct: 67  NVIRSYIRRNPDAFVAVVGCYSQM-GYKTLAEIEGVDLIIGNQDKMSVLDYVKMGKNEKP 125

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           ++  D  V++ F     +D          A L IQ+GCD  CTFC++P  RG   SR + 
Sbjct: 126 LIIRDRIVKEDF----TIDTMGQSDSKTRANLKIQDGCDFMCTFCIIPMARGRSRSRDME 181

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
            +++EAR LI  G  EI + G NV  +  +G      TF D++  L+E++G+ R+R ++ 
Sbjct: 182 NLLEEARTLIGQGFREIVITGVNVATYDSQGR-----TFLDVIDRLNELEGIERIRISSI 236

Query: 269 HPRDMSDCLIKAHGDLD-VLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
            P  + + +     D +  L+PYLH+P+QSGSD++LK M RR+   E+   I       P
Sbjct: 237 EPTTIPEKIFDYMADPNHALVPYLHIPLQSGSDKVLKIMKRRYERQEFLDFIKMASERVP 296

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDK--IGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
           D+ I +D +VG  GE + +F  T D + K  + Y   F+F  S R GTP   M E+V   
Sbjct: 297 DLCIGTDVMVGMCGEDEKEFEDTCDFLIKSPVNYFHVFTF--SERDGTPAVKMEEKVHPK 354

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419
            K+ R   L+     +++ F +  +G+  +VL E
Sbjct: 355 EKSHRSSVLRAISERKRLKFYNDYIGREFDVLFE 388


>gi|110638137|ref|YP_678346.1| 2-methylthioadenine synthetase [Cytophaga hutchinsonii ATCC 33406]
 gi|110280818|gb|ABG59004.1| possible 2-methylthioadenine synthetase [Cytophaga hutchinsonii
           ATCC 33406]
          Length = 438

 Score =  184 bits (466), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 126/437 (28%), Positives = 219/437 (50%), Gaps = 26/437 (5%)

Query: 33  GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92
           GC++N  ++  +  MF   GYE+V   + AD+ ++NTC + + A +K        + +  
Sbjct: 10  GCKLNFSETSTIGRMFTENGYEKVEFHEKADVYIINTCSVTDHADKKC-------KKVVK 62

Query: 93  SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDT 152
             ++      V + GC AQ + EEI +  P V+ V+G    ++L ELL    F K+   T
Sbjct: 63  EALRYSPGAFVGIIGCYAQLKPEEIAQ-IPGVDAVLGASEKFKLFELL--GNFDKQDKAT 119

Query: 153 DYSVE-----DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
            Y+ +     D +   S+ D    R R    FL +Q+GCD  C+FC +P  RG   S ++
Sbjct: 120 IYTSDIAHATDYYCSYSVND----RTR---TFLKVQDGCDYSCSFCTIPLARGSSRSDTI 172

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT-FSDLLYSLSEIKGLVRLRYT 266
           + +V  A+++    V EI L G N+  +    + G + T F DL+  L +++G+ R R +
Sbjct: 173 ANIVKTAKEIAAKDVKEIVLTGVNIGDY--GIISGTRTTSFLDLIKELDKVEGIERFRIS 230

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
           +  P  ++D +I         +P+ H+P+QSG+D+ILK M RR+    Y + ++ I+ V 
Sbjct: 231 SIEPNLLTDEIISFVSTSRRFVPHFHIPLQSGNDKILKLMRRRYKRELYAERVEAIKKVM 290

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           P   I  D IVGFPGETD+DF  T + ++++  +    F YS R  T  + M  +     
Sbjct: 291 PHACIGVDVIVGFPGETDEDFNVTYNFLNELDISYLHVFSYSERANTLAATMKGKRPNRD 350

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHN 446
           ++ER   L+    +++  F +  + +  +VL E   +E G + G +     VV       
Sbjct: 351 RSERSTMLRTLSEKKRRFFYEQHITETADVLFEAE-EENGSMFGFTNNYVKVVTAYDPLW 409

Query: 447 IGDIIKVRITDVKISTL 463
           + ++ KV++  +    L
Sbjct: 410 VNELKKVKLKTINTEGL 426


>gi|224371641|ref|YP_002605805.1| putative methylthioadenine synthetase [Desulfobacterium
           autotrophicum HRM2]
 gi|223694358|gb|ACN17641.1| putative methylthioadenine synthetase [Desulfobacterium
           autotrophicum HRM2]
          Length = 437

 Score =  184 bits (466), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 120/406 (29%), Positives = 206/406 (50%), Gaps = 18/406 (4%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           F++ + GC++N Y+S  +     + G+ RV +++ A + ++NTC +  +AA +       
Sbjct: 4   FYITTLGCKVNQYESNGIATTLINNGWTRVEAVEKASVCIVNTCAVTARAAVQS------ 57

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
            R    S I+      V+V GC AQ E  +++ +   V+ VVG    +++ E L     G
Sbjct: 58  -RQAIRSIIRTNPGAKVIVTGCHAQTE-PDLVGKIEHVHSVVGHGDKFKIAETLISPDQG 115

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRG--VTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
              +D+    E  +  L+   G      G    A+L IQ+GC+ FC++C+VPY RG   S
Sbjct: 116 ---IDSLPFPEKSYCTLTQFQGFEPAVTGNMTRAYLKIQDGCNAFCSYCIVPYARGRSRS 172

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRL 263
             + +V+     L + G  E+ L G +  AW   G D  EK +F DLL ++ E   + R+
Sbjct: 173 MPMDEVLAHLAYLHEKGYKEVILTGIHTGAW---GADFPEKRSFLDLLKTIVEKSPIHRV 229

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R ++  P ++SD +I    D  ++  + H+P+QSG D ILK M R +    +R+++ +I 
Sbjct: 230 RISSIEPIEISDEIIGLAADHAIICDHFHIPLQSGDDGILKRMGRPYDTGYFRELVLKIH 289

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              P  A+  D + GFPGE+D  F  T  L+  +  +    F +SPR GTP  +  ++V 
Sbjct: 290 ETMPRAAMGIDVLQGFPGESDQAFERTHALLAGLPISYLHVFPFSPRKGTPAFDYPDRVA 349

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKGKL 428
             +  +R   ++   RE++ +F    +GQ    +I E+  +E G L
Sbjct: 350 PGILKQRCAAMRALGREKRRAFELGNIGQRFGAIIQEQRDRETGML 395


>gi|300716030|ref|YP_003740833.1| conserved uncharacterized protein [Erwinia billingiae Eb661]
 gi|299061866|emb|CAX58982.1| conserved uncharacterized protein [Erwinia billingiae Eb661]
          Length = 442

 Score =  184 bits (466), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 140/466 (30%), Positives = 231/466 (49%), Gaps = 49/466 (10%)

Query: 19  DQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAE 78
           +  + P+  FV S GC  N+ DS R+     ++GYE V   DDA+++++NTC   + A +
Sbjct: 4   NTTMAPRVGFV-SLGCPKNLVDSERILTELRTEGYEVVPRYDDAEIVIVNTCGFIDSAVQ 62

Query: 79  KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPE 138
           +    +G   N       E G   V+V GC+   E + I    P V  + GP +Y ++  
Sbjct: 63  ESLEAIGEALN-------ENGK--VIVTGCLGAKENQ-IREVHPKVLEITGPHSYEQV-- 110

Query: 139 LLERARFGKRVVDTDYSVEDKFERLSIV-DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197
           L    R+  +     +        LS+V + G        A+L I EGC+  CTFC++P 
Sbjct: 111 LSHVHRYVPKPAHNPF--------LSLVPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPS 162

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCT 246
            RG   SR +  V+DEA++L + GV E+ ++ Q+ +A           W G  +   K +
Sbjct: 163 MRGDLDSRPIGSVLDEAKRLAEAGVKELLVISQDTSAYGVDVKHRTGFWNGSPV---KTS 219

Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306
              L   L+++   VRL Y   +P       + A G L   +PYL +P+Q  S RILK M
Sbjct: 220 MVSLCEQLAKLGVWVRLHYVYPYPHVDDVIPLMAEGKL---LPYLDIPLQHASPRILKLM 276

Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
            R        + I R R + PD+ + S FIVGFPGET++DF+  +D + +    +   FK
Sbjct: 277 KRPGAVERTLERIKRWREICPDLTLRSTFIVGFPGETEEDFQMLLDFLKEARLDRVGCFK 336

Query: 367 YSPRLGTPGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK 423
           YSP  G   + + + V E+VK E   R + LQ+ +  +++      VG+ I V+I++  +
Sbjct: 337 YSPVEGATANQLPDPVPESVKEERYDRFMQLQQAISAERLQEK---VGREILVIIDEVDE 393

Query: 424 EK--GKLVGRSPWLQ-SVVLN-SKNHNIGDIIKVRITDVKISTLYG 465
           E   G+ +  +P +  +V LN  K+   GD+++V++ +     L+ 
Sbjct: 394 EGAIGRSMADAPEIDGAVYLNGEKSLKPGDVVRVKVDNADEYDLWA 439


>gi|328541783|ref|YP_004301892.1| methylase protein (RNA modification enzyme), MiaB family
           [polymorphum gilvum SL003B-26A1]
 gi|326411535|gb|ADZ68598.1| Putative methylase protein (RNA modification enzyme), MiaB family
           [Polymorphum gilvum SL003B-26A1]
          Length = 422

 Score =  184 bits (466), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 138/452 (30%), Positives = 222/452 (49%), Gaps = 50/452 (11%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V ++GC++N Y+S  M+    + G +        D I++NTC +  +A  +    + + R
Sbjct: 5   VVTFGCRLNSYESEVMKREAEAAGLK--------DAILINTCAVTAEAVRQAGQAVRKAR 56

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK- 147
                  ++  D  ++V GC AQ E       +  V++V+G        E LERA +G+ 
Sbjct: 57  -------RDNPDATIIVTGCAAQTETARFAEMAE-VDLVLGNS------EKLERASYGRL 102

Query: 148 -----------RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
                      RV D   SV +    L  +DG   R R   AF+ +Q GCD  CTFC++P
Sbjct: 103 AQFGLDDSEKVRVNDI-MSVRETAGHL--IDGLEGRAR---AFVQVQNGCDHRCTFCIIP 156

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256
           + RG   S  +  VVD+ R+L+DNG  EI L G ++ ++ G  L G     + +   L  
Sbjct: 157 FGRGNSRSVPMGVVVDQVRRLVDNGYLEIVLTGVDITSY-GADLPGAPRLGALVAKILKL 215

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           + GL RLR ++    +    L++   + + LMP+ HL +Q+G D ILK M RRH   +  
Sbjct: 216 VPGLKRLRLSSIDSIEADPALMRVVAEDERLMPHFHLSLQAGDDLILKRMKRRHLRADTI 275

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
           +  + +R +RPD+   +D I GFP ET+  F  ++ +VD  G      F +SPR GTP +
Sbjct: 276 RFCEEVRRLRPDVVFGADIIAGFPTETEAMFENSLAIVDDCGLTHLHVFPFSPRPGTPAA 335

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQ 436
            M  Q+D+ V   R   L+ +      ++  A VG++  VL+E+ G      +GR+    
Sbjct: 336 RM-PQLDKAVIKARAARLRARGEAALAAYLAAEVGRLRPVLVEREG------LGRTEQFT 388

Query: 437 SVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            V ++      G+I++ RIT      L G L+
Sbjct: 389 QVEVDGGTP--GEIVETRITGHTGRHLLGTLL 418


>gi|205352105|ref|YP_002225906.1| ribosomal protein S12 methylthiotransferase [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|238066622|sp|B5R840|RIMO_SALG2 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|205271886|emb|CAR36726.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|326627147|gb|EGE33490.1| putative FeS oxidoreductase [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
          Length = 441

 Score =  184 bits (466), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 140/462 (30%), Positives = 233/462 (50%), Gaps = 45/462 (9%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  FV S GC  N+ DS R+     ++GY+ V   DDAD++++NTC   + A ++    
Sbjct: 8   PKIGFV-SLGCPKNLVDSERILTELRTEGYDVVPRYDDADMVIVNTCGFIDSAVQESLEA 66

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G   N       E G   V+V GC+   E ++I    P V  + GP +Y ++ + +   
Sbjct: 67  IGEALN-------ENGK--VIVTGCLGAKE-DQIREVHPKVLEITGPYSYEQVLQHVHH- 115

Query: 144 RFGKRVVDTDYSVEDKFER-LSIV-DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
                     Y  + K    LS+V + G        A+L I EGC+  CTFC++P  RG 
Sbjct: 116 ----------YVPKPKHNPFLSLVPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGD 165

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYS 253
            +SR +  V+ EA++L+D GV EI ++ Q+ +A+      R    +GE  K +   L   
Sbjct: 166 LVSRPIGDVLSEAKRLVDAGVKEILVISQDTSAYGVDVKHRTGFHNGEPVKTSMVSLCEQ 225

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
           LS++    RL Y   +P       + A G +   +PYL +P+Q  S RILK M R  +  
Sbjct: 226 LSKLGVWTRLHYVYPYPHVDDVIPLMAEGKI---LPYLDIPLQHASPRILKLMKRPGSVD 282

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
                I + R + P++ + S FIVGFPGET++DF+  +D + +    +   FKYSP  G 
Sbjct: 283 RQLARIKQWREICPELTLRSTFIVGFPGETEEDFQMLLDFLKEARLDRVGCFKYSPVEGA 342

Query: 374 PGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKL 428
             + + +QV E VK E   R + LQ+++  +++      VG+ I V++++  +E   G+ 
Sbjct: 343 GANELPDQVPEEVKEERWNRFMQLQQQISAERLQEK---VGREILVIVDEVDEEGAIGRS 399

Query: 429 VGRSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468
           +  +P +   V  +   N+  GDI++V++ +     L+G  V
Sbjct: 400 MADAPEIDGAVYLNGETNVKPGDIVRVKVENADEYDLWGSRV 441


>gi|146306744|ref|YP_001187209.1| MiaB-like tRNA modifying enzyme YliG [Pseudomonas mendocina ymp]
 gi|238066507|sp|A4XT11|RIMO_PSEMY RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|145574945|gb|ABP84477.1| SSU ribosomal protein S12P methylthiotransferase [Pseudomonas
           mendocina ymp]
          Length = 440

 Score =  184 bits (466), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 148/472 (31%), Positives = 228/472 (48%), Gaps = 64/472 (13%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  FV S GC     DS R+      +GYE V +  DAD++V+NTC   + A  +    
Sbjct: 6   PKVGFV-SLGCPKATVDSERILTQLRMEGYEIVPTYQDADVVVVNTCGFIDSAKAESLDA 64

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G         I E G   V+V GC+  AE + I    P V  V GPQ Y ++   +   
Sbjct: 65  IGE-------AIAENGK--VIVTGCMGVAE-DSIRDVHPSVLAVTGPQQYEQVVSAVHEV 114

Query: 144 RFGKRVVDTDYSVEDKFERLSIVD----GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
                       V  K E   ++D     G        A+L I EGC+  C+FC++P  R
Sbjct: 115 ------------VPPKTEHNPLIDLVPPQGIKLTPRHYAYLKISEGCNHSCSFCIIPSMR 162

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFS 248
           G  +SR +  V+ EA +L+  GV E+ ++ Q+ +A           W G+ +   K    
Sbjct: 163 GKLVSRPVGDVLSEAERLVKAGVKELLVISQDTSAYGVDMKYKLDFWNGQPV---KTRML 219

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
           +L  +LS +   VRL Y   +P       + A G    L+PYL +P Q  S ++LKSM R
Sbjct: 220 ELCEALSSMGVWVRLHYVYPYPNVDDVIPLMAAGK---LLPYLDIPFQHASPKVLKSMKR 276

Query: 309 RHTAYEYRQI--IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
              A+E + +  I + R + P++ I S FIVGFPGET++DF+  +D + +    +   F+
Sbjct: 277 --PAFEDKTLARIKKWREICPELTIRSTFIVGFPGETEEDFQYLLDWLTEAQLDRVGCFQ 334

Query: 367 YSPRLGTPGSNM-LEQVDENVKAERLLCLQKKLREQQVSFN---DACVGQIIEVLIEKHG 422
           YSP  G P +++ LE V ++VK ER    ++ +  QQ   +    A +G  ++VL+++  
Sbjct: 335 YSPVEGAPANDLGLEPVPDDVKQER---WERFMAHQQAISSARLQAKIGLEMDVLVDEVD 391

Query: 423 KEKGKLVGRSPWLQ------SVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            E    V RS W        SV ++S     GD ++VRI D     ++GELV
Sbjct: 392 GEGA--VARS-WADAPEIDGSVFIDSTAVKPGDKVRVRIVDADEYDMWGELV 440


>gi|148270069|ref|YP_001244529.1| MiaB-like tRNA modifying enzyme YliG [Thermotoga petrophila RKU-1]
 gi|238064961|sp|A5IL80|RIMO_THEP1 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|147735613|gb|ABQ46953.1| MiaB-like tRNA modifying enzyme YliG [Thermotoga petrophila RKU-1]
          Length = 430

 Score =  184 bits (466), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 138/455 (30%), Positives = 229/455 (50%), Gaps = 38/455 (8%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA----EKVY 81
           R  +K  GC  N  D   +  +    G+E V  + DAD++VL+TC   E A     ++++
Sbjct: 2   RVGIKVLGCPKNEADCEVLAGVLREGGHEIVFDVKDADVVVLDTCAFIEDAKRESIDEIF 61

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           SF+       +++ + G  L  VV GC+ Q   EE+ +  P V+  +G      +   +E
Sbjct: 62  SFV-------DAKDQYGYKL--VVKGCLVQRYYEELKKEVPEVDQWIGVADPEEIANAIE 112

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
                  V D   +V    +R+ + +  Y       A++ I +GCD+ CTFC +P  +G 
Sbjct: 113 NGT--DLVPDQPETVYRYRKRIDLEERPY-------AYVKISDGCDRGCTFCSIPSFKGS 163

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGL 260
             SRS+  +  E   L+  G  EI L+ Q+  ++   G+D   K    DLL  L+ + G 
Sbjct: 164 LRSRSIEDITREVEDLLKEGKKEIILVAQDTTSY---GIDLYRKQALPDLLRRLNSLNGE 220

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
             +R    HP  +++ +I A  +LD ++ Y  +PVQ GSD+ILK M R  ++ E ++++ 
Sbjct: 221 FWIRVMYLHPDHLTEEIISAMLELDKVVKYFDVPVQHGSDKILKLMGRTKSSEELKKMLS 280

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
            IR   PD  + +  IVGFPGET++DF      V++I + +  +F YS   GT   N+ E
Sbjct: 281 SIRERFPDAVLRTSIIVGFPGETEEDFEELKQFVEEIQFDKLGAFVYSDEEGTVAFNLKE 340

Query: 381 QVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----P 433
           +VD  +   + E LL LQ ++   ++   D  VG+ ++ L+E  GKE   LVGR+    P
Sbjct: 341 KVDPEMAKRRQEELLLLQAEISNSRL---DRFVGKKLKFLVE--GKEGKFLVGRTWTEAP 395

Query: 434 WLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            +  VV       IGD ++V I +     ++G ++
Sbjct: 396 EVDGVVFVRGKGKIGDFLEVVIKEHDEYDMWGSVI 430


>gi|285808553|gb|ADC36074.1| putative 2-methylthioadenine synthetase [uncultured bacterium 164]
          Length = 449

 Score =  184 bits (466), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 136/452 (30%), Positives = 216/452 (47%), Gaps = 24/452 (5%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ DS  M       GYE  +   +AD +V+NTC   E A ++    +     L
Sbjct: 8   SLGCPKNLVDSEVMMGQLAEAGYEITSKAGEADTVVVNTCGFIESAKQESIDAI-----L 62

Query: 91  KNSRIK-EGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149
           + +R+K EG    V+VAGC+ +   E++++  P V+  +G     ++ E+L+ A      
Sbjct: 63  EATRLKTEGHATRVIVAGCMVERYREDLVKELPEVDAFIGTS---QVGEILKAADENFDA 119

Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGV---TAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
                +         + D    R R     TAF+ I EGCD+ C FC +P  RG   SR 
Sbjct: 120 GQLTATPIGNKSATYLYDEYTPRLRATQSHTAFVKIAEGCDRPCAFCSIPSMRGSFRSRR 179

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
              +V+EAR L   GV E+ L+ Q+ + + G+ L GE    + L+ ++ EI  L  +R  
Sbjct: 180 FGSIVEEARMLARQGVKEVVLIAQDSSRY-GEDL-GEVDALAALIRAIGEIDDLEWVRVM 237

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
            ++P  +SD  + A  +    + YL +P+Q  S  +LK M R        ++I+R+R   
Sbjct: 238 YAYPTHISDAFLAAVAETPKAVKYLDMPLQHASRNVLKLMKRGGNRGSLERLIERVRERV 297

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           P IAI + FI GFPGET +DF   M+ V    +     F YS   GTP   +  +VD  +
Sbjct: 298 PGIAIRTTFITGFPGETQEDFEELMEFVRNCRFDNVGVFTYSDEEGTPAYVLPNKVDPKI 357

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-----KGKLVGRSPWLQSVVLN 441
             +R   L K+        N A +G+  +V+ E   +E     +G+L G++  +   +L 
Sbjct: 358 AKQRRGRLMKEQARISKQLNAAKIGETYKVMFEGISQESDMLFQGRLPGQTQDIDGYILI 417

Query: 442 SK-----NHNIGDIIKVRITDVKISTLYGELV 468
           +         +G+I  VRIT+     L GE+V
Sbjct: 418 NDVPERLEPQVGEIYDVRITEALEYDLVGEIV 449


>gi|300175767|emb|CBK21310.2| unnamed protein product [Blastocystis hominis]
          Length = 500

 Score =  184 bits (466), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 134/425 (31%), Positives = 216/425 (50%), Gaps = 50/425 (11%)

Query: 36  MNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRI 95
           MN  DS  ME +    G     + ++AD+I++NTC +RE A  ++++ L + RNL     
Sbjct: 1   MNRADSEIMETLLSECGMTESKNEEEADVIIMNTCSVREHAESRIWNRLKQFRNLDKKYK 60

Query: 96  KEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYS 155
           K     ++ ++GC+A     ++L     V+VVVGP +Y  LP L+  A  GK+   T+ +
Sbjct: 61  KR---TILCISGCMATRLRTKLLESG--VDVVVGPDSYVHLPPLIFDAFNGKQAFHTELN 115

Query: 156 VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEAR 215
             + ++ +S     +      T  +TI  GC+  C++CVVPYTRG E S  +  V+ E +
Sbjct: 116 GNNDYDAIS---PSFLEPLPATQ-ITIMRGCNNMCSYCVVPYTRGRERSVDVDVVLREVK 171

Query: 216 KLIDNGVCEITLLGQNVNAW-----RGKGLDGEKCT----------------FSDLLYSL 254
           +  ++G  EI LLGQNVN++       KG +  + T                F +LL  +
Sbjct: 172 RAEEHGYKEIMLLGQNVNSYCDRSHLAKGSEKYETTPGFRSPTSTKAKTGILFPELLRLV 231

Query: 255 SEIKGLVRLRYTTSHPR-----------DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
           +E     R+R+ + HP+           D    +++   +   +   LHLP+QSGS+  L
Sbjct: 232 AEEVPETRIRFMSPHPKVEIGGRKIYLKDFPMSVLEVIAEHPNICRSLHLPLQSGSNSCL 291

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           + MNR +T   + Q++D IRS+ PD AIS+D I GF GET+ +   T++L+ +IG+  AF
Sbjct: 292 QRMNRPYTREAFIQLVDAIRSILPDCAISTDVIAGFCGETEAEHADTVELMREIGFDHAF 351

Query: 364 SFKYSPRLGTPGSNML-EQVDENVKAERLLCLQ----KKLREQQVSFNDACVGQIIEVLI 418
            + YS R  T       + +   VK  RL+ +Q      LRE+  S      G++  VL+
Sbjct: 352 MYLYSMRENTYAWRYFKDDIPLEVKKRRLVEIQDAFYSTLREKLPSQK----GKVELVLV 407

Query: 419 EKHGK 423
           E   K
Sbjct: 408 EGESK 412


>gi|207091912|ref|ZP_03239699.1| putative ATP-binding protein [Helicobacter pylori HPKX_438_AG0C1]
          Length = 291

 Score =  184 bits (466), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 109/291 (37%), Positives = 167/291 (57%), Gaps = 11/291 (3%)

Query: 185 GCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE- 243
           GCDK C +C+VP+TRG EIS  +  ++ EA KL +NG  E+ LLGQNVN + G     E 
Sbjct: 1   GCDKKCAYCIVPHTRGKEISIPMDLILKEAEKLANNGTKELMLLGQNVNNY-GTRFSSEH 59

Query: 244 -KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
            K  FSDLL  LSEI+G+ R+R+T+ HP  M+D  ++       +   +H+P+QSGS  +
Sbjct: 60  AKVDFSDLLDKLSEIQGIERIRFTSPHPLHMNDAFLERFAKNPKVCKSIHMPLQSGSSAV 119

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           LK M R ++   +   ++R++++ P++ IS+D IVGFP E+D DF  TM++++K+ +   
Sbjct: 120 LKMMRRGYSKEWFLNRVERLKALVPEVGISTDIIVGFPNESDKDFEDTMEVLEKVRFDTL 179

Query: 363 FSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422
           +SF YSPR  T      E+V   V + RL  LQ + +E         VG+   VL+E   
Sbjct: 180 YSFIYSPRPFTEAGAWKERVPLEVSSSRLERLQNRHKEILEEKAKLEVGKTHVVLVENRR 239

Query: 423 KEKGKLV---GRSPWLQSVVLNSK-NHNIGDIIKVRITDVKISTLYGELVV 469
           +   ++V   GRS   + + +  K   N G+++KV I    IS   G L+ 
Sbjct: 240 EMDNQIVGFEGRSDTGKFIEVTCKEKRNPGELVKVEI----ISHSKGRLIA 286


>gi|158425333|ref|YP_001526625.1| MiaB-like tRNA modifying enzyme [Azorhizobium caulinodans ORS 571]
 gi|158332222|dbj|BAF89707.1| MiaB-like tRNA modifying enzyme [Azorhizobium caulinodans ORS 571]
          Length = 429

 Score =  184 bits (466), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 135/449 (30%), Positives = 210/449 (46%), Gaps = 64/449 (14%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V ++GC++N  D   ++    + G  R         +++N+C +    AE V      IR
Sbjct: 14  VVTFGCRLNTLDGAEIQRAATAAGLTRT--------VIVNSCAV---TAEAVRQARQSIR 62

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL--------- 139
            LK +       L VVV GC AQ E                PQT+  +PE+         
Sbjct: 63  RLKRADPA----LKVVVTGCAAQTE----------------PQTFATMPEVDRVVGNGAK 102

Query: 140 --LERARFGKRVVDTDYSVEDKFE----------RLSIVDGGYNRKRGVTAFLTIQEGCD 187
             +E     +   D   S E+K +           L +VDG   R R   AF+ +Q GCD
Sbjct: 103 GAVETWAEARAAFDFGVSAEEKVKVDDIFAVRETALHMVDGMDGRTR---AFVQVQNGCD 159

Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTF 247
             CTFC++PY RG   S  +  VV   R L + G  E+ L G ++ ++ G  L G     
Sbjct: 160 HRCTFCIIPYGRGASRSVPMGDVVAHIRALAEGGQKEVVLTGVDLTSY-GADLPGAPTLG 218

Query: 248 SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307
             +   L ++  L RLR ++    +    L++A  + + LMP+LHL +QSG D ILK M 
Sbjct: 219 RLVRAILRQVPELERLRLSSIDSVEADADLLRALAEEERLMPHLHLSLQSGDDMILKRMK 278

Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           RRH+  +   +++ +R +RPD+ + +D I GFP ET+  FR ++ +VD  G +    F +
Sbjct: 279 RRHSRAQVIALVEEMRRLRPDLVLGADLIAGFPTETEAMFRNSLSIVDACGLSFLHVFPF 338

Query: 368 SPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK 427
           S R GTP + M   V  +V   R   L++K  E       A +G+   VL+E+ G     
Sbjct: 339 SARAGTPAARM-PPVPGDVVDARARRLREKGEEALRRHLAAEIGRRHPVLVERGG----- 392

Query: 428 LVGRSPWLQSVVLNSKNHNIGDIIKVRIT 456
            +GR+P+   V L+ +    G +I +RI 
Sbjct: 393 -IGRTPYFTPVRLH-RAAQPGAVIDLRIA 419


>gi|282882041|ref|ZP_06290682.1| hypothetical protein HMPREF0628_0687 [Peptoniphilus lacrimalis
           315-B]
 gi|281298071|gb|EFA90526.1| hypothetical protein HMPREF0628_0687 [Peptoniphilus lacrimalis
           315-B]
          Length = 437

 Score =  184 bits (466), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 133/447 (29%), Positives = 236/447 (52%), Gaps = 26/447 (5%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC  N  DS  M  +     Y   N    AD+I++NTC   + A E+    +     L
Sbjct: 8   TLGCSKNEVDSSCMMSILDKNRYSVENDPQKADIIIVNTCGFIDAAKEESIDTI-----L 62

Query: 91  KNSRIKEGGDLL-VVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149
           + ++ KE G    ++++GC+AQ   EE+L+  P  + ++G     ++ ++L+R+  G++V
Sbjct: 63  QMAKYKETGSCKKMILSGCLAQRYPEELLKEIPEADGIIGTGNISQINDILDRSIDGEKV 122

Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209
           +  D ++   +     ++G    K  +T ++ I EGC+  C++C++P  RG   SR +  
Sbjct: 123 IKVD-NINSPY-----LEGIKKEKVNITEYVKISEGCNNNCSYCIIPKLRGKNRSRRIED 176

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSH 269
           + +E   L  NG  EI L+ QN   + G  L G + + S L+  +S+I  +  +R    +
Sbjct: 177 IYEEVSYLAKNGAREIILIAQNTTDY-GIDLYG-RYSLSKLIKEISKINDIKWIRVLYLY 234

Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY-RQIIDRIRSVRPD 328
           P   +D LI    + D L+ Y+ +P+Q  SD +LK M+ RHT  E+ + +I+++R ++  
Sbjct: 235 PDHFTDELINEFINNDKLVKYVDIPLQHYSDHVLKLMD-RHTDKEHIKNLIEKLRKIKG- 292

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           + I + FIVGFPGE+++DF    + ++   + +   F YS    T  +N+ EQ+DE+VK 
Sbjct: 293 LVIRTTFIVGFPGESEEDFNILREFINTYKFDKLGVFTYSREESTKANNLNEQIDEDVKE 352

Query: 389 -ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVV-LNS 442
             R + +Q +L+  +    D  +GQ+++VLIE+   E     GR    SP +  V+ +NS
Sbjct: 353 YRRDIIMQDQLKISERLLEDK-IGQVLQVLIEEK-IEDNLFAGRSYIDSPDIDGVIYVNS 410

Query: 443 -KNHNIGDIIKVRITDVKISTLYGELV 468
            KN  I   I V++T      L G+ +
Sbjct: 411 DKNLTINSFINVKVTSSMEYDLIGDAI 437


>gi|91977104|ref|YP_569763.1| hypothetical protein RPD_2633 [Rhodopseudomonas palustris BisB5]
 gi|123721828|sp|Q136X7|RIMO_RHOPS RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|91683560|gb|ABE39862.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB5]
          Length = 441

 Score =  183 bits (465), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 139/466 (29%), Positives = 222/466 (47%), Gaps = 48/466 (10%)

Query: 18  VDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA 77
           + Q   P+  FV S GC   + DS R+     ++GYE     D ADL+++NTC   + A 
Sbjct: 1   MQQAAAPKISFV-SLGCPKALVDSERIITRLRAEGYELARQHDGADLVIVNTCGFLDSAK 59

Query: 78  EKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLP 137
           ++  + +G                 V+V GC+  AE E+I    P V  + GPQ Y  + 
Sbjct: 60  QESLAAIGEAMAANGK---------VIVTGCMG-AEPEQIEAAYPGVLSITGPQQYESVL 109

Query: 138 ELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197
           E + RA+        D   E   + + +    Y       A+L I EGC+  C+FC++P 
Sbjct: 110 EAVHRAKPALHNPHLDLVPE---QGIRLTPRHY-------AYLKISEGCNNRCSFCIIPK 159

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCT 246
            RG  +SRS   V+ EA KL+  GV E+ ++ Q+ +A           W+ + +   +  
Sbjct: 160 LRGDLVSRSADDVLREAEKLVAAGVKELLVISQDTSAYGVDLKYAESPWKDRTV---RAK 216

Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306
           F DL   L E+   VRL Y   +P       + A G +   +PYL +P Q  S  +LK M
Sbjct: 217 FIDLARELGELGAWVRLHYVYPYPHVDEVIGLMAEGKV---LPYLDIPFQHASPDVLKLM 273

Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
            R     +    I R R+  PD+A+ S FIVGFPGET+ DF   +D +D+    +  +FK
Sbjct: 274 KRPAAQDKTLDRIKRWRADCPDLALRSTFIVGFPGETERDFEFLLDWLDEAEIDRLGAFK 333

Query: 367 YSPRLGTPGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK 423
           Y P  G P + + +Q+   VK E   RL+  Q+ +  +++      VG   +++I++ G 
Sbjct: 334 YEPVAGAPSNALPDQISAEVKQERWNRLMARQQVISARRLKRK---VGTRQQIIIDEVGP 390

Query: 424 --EKGKLVGRSPWLQ-SVVLNSKNH-NIGDIIKVRITDVKISTLYG 465
              KG+    +P +  SV L+S+    +G+I+  +I       L+G
Sbjct: 391 TVAKGRSKADAPEIDGSVYLSSRRPLRVGEIVTAKIDRADAYDLHG 436


>gi|330830506|ref|YP_004393458.1| ribosomal protein S12 methylthiotransferase rimO [Aeromonas veronii
           B565]
 gi|328805642|gb|AEB50841.1| Ribosomal protein S12 methylthiotransferase rimO [Aeromonas veronii
           B565]
          Length = 428

 Score =  183 bits (465), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 144/451 (31%), Positives = 221/451 (49%), Gaps = 40/451 (8%)

Query: 33  GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92
           GC  N+ DS R+     ++GY+ V S DDA+L+V+NTC   + A ++    +G       
Sbjct: 2   GCPKNLVDSERILTQLRTEGYDVVPSYDDAELVVVNTCGFIDSAVQESLEAIGEA----- 56

Query: 93  SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDT 152
             + E G   V+V GC+   E + I    P V  + GP  Y  +         G      
Sbjct: 57  --LAENGK--VIVTGCLGAKENQ-IREIHPKVLEITGPHAYEEV--------LGHVHKYV 103

Query: 153 DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVD 212
           +    + F  L    G     R   A+L I EGC+  CTFC++P  RG  +SR +  V+ 
Sbjct: 104 EKPQHNPFTSLVPAHGVKLTPRHY-AYLKISEGCNHRCTFCIIPSMRGDLVSRPIGDVLA 162

Query: 213 EARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYSLSEIKGLVRLR 264
           EA++L + GV E+ ++ Q+ +A+      R    DG   K +   L   L+++   VRL 
Sbjct: 163 EAKRLKEAGVKELLVISQDTSAYGVDVKHRTGFYDGMPVKTSMVALCEELAKLDIWVRLH 222

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           Y   +P    D +I    D  VL PYL +P+Q  S RILK M R  T     + I + R 
Sbjct: 223 YVYPYPH--VDDIIPLMRDGKVL-PYLDIPLQHASPRILKLMKRPGTVERTLERIQKWRE 279

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           + P I + S FIVGFPGET++DF+  +D +DK    +   FKYSP  G   + + + V E
Sbjct: 280 ICPQITLRSTFIVGFPGETEEDFQMLLDFIDKAELDRVGCFKYSPVEGALANELPDPVPE 339

Query: 385 NVKAERLLCLQKKLR-EQQVSFNDAC--VGQIIEVLIEKHGKE--KGKLVGRSPWLQSVV 439
            ++ ER    Q+ +  +QQVS       VGQ + V+I++  +E   G+    +P +  +V
Sbjct: 340 EIQEER---FQRFMELQQQVSIRKLARKVGQEMTVIIDEVDEEGATGRSFADAPEIDGLV 396

Query: 440 -LNSKNH-NIGDIIKVRITDVKISTLYGELV 468
            LN +     GD++KVRI +     L+  L+
Sbjct: 397 YLNGETGLKPGDMVKVRIDESDEYDLWASLI 427


>gi|316934166|ref|YP_004109148.1| MiaB-like tRNA modifying enzyme YliG [Rhodopseudomonas palustris
           DX-1]
 gi|315601880|gb|ADU44415.1| MiaB-like tRNA modifying enzyme YliG [Rhodopseudomonas palustris
           DX-1]
          Length = 441

 Score =  183 bits (465), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 141/466 (30%), Positives = 223/466 (47%), Gaps = 48/466 (10%)

Query: 18  VDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA 77
           + Q   P+  FV S GC   + DS R+     ++GYE     D ADL+++NTC   + A 
Sbjct: 1   MQQAAAPKISFV-SLGCPKALVDSERIITRLRAEGYELARKHDGADLVIVNTCGFLDSAK 59

Query: 78  EKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLP 137
           ++  + +G                 V+V GC+  AE E+I    P V  + GPQ Y  + 
Sbjct: 60  QESLAAIGEAMAANGK---------VIVTGCMG-AEPEQIEAAYPGVLSITGPQQYESVL 109

Query: 138 ELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197
           + + RAR        D  V  +  RL+             A+L I EGC+  C+FC++P 
Sbjct: 110 DAVHRARPALHNPHLDL-VPPQGVRLTPRH---------YAYLKISEGCNNRCSFCIIPK 159

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCT 246
            RG  +SR    V+ EA KL+  GV E+ ++ Q+ +A           W+ + +   +  
Sbjct: 160 LRGDLVSRPAGDVLREAEKLVAAGVKELLVISQDTSAYGVDVKYAESPWKDRAV---RAK 216

Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306
           F DL   L E+   VRL Y   +P    D +I    D  VL PYL +P Q  S  +L+ M
Sbjct: 217 FLDLANELGELGAWVRLHYVYPYPH--VDEVIGLMADGKVL-PYLDIPFQHASPDVLRQM 273

Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
            R     +    I R R + P++A+ S FIVGFPGET+ DF   +D +D+    +  +FK
Sbjct: 274 KRPAAQDKTLDRIKRWREICPELALRSTFIVGFPGETERDFEFLLDWLDEAEIDRVGAFK 333

Query: 367 YSPRLGTPGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK 423
           Y P  G P + + +Q+ + VK E   RL+  Q+ +  +++      VG   +V+I++ G 
Sbjct: 334 YEPVAGAPSNALEDQIADEVKQERWNRLMARQQAISARRLKRK---VGTRQQVIIDEIGP 390

Query: 424 --EKGKLVGRSPWLQ-SVVLNSKNH-NIGDIIKVRITDVKISTLYG 465
              KG+    +P +  +V L+S+    IG+I+  +I       L+G
Sbjct: 391 TVAKGRSKADAPEIDGAVYLSSRRPLRIGEIVTAKIDRADAYDLHG 436


>gi|223984231|ref|ZP_03634378.1| hypothetical protein HOLDEFILI_01672 [Holdemania filiformis DSM
           12042]
 gi|223963800|gb|EEF68165.1| hypothetical protein HOLDEFILI_01672 [Holdemania filiformis DSM
           12042]
          Length = 460

 Score =  183 bits (465), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 120/412 (29%), Positives = 210/412 (50%), Gaps = 37/412 (8%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V S GC  N+ DS RM  +    G+E V+ + +A+ I++NTC   E A E+  + +  + 
Sbjct: 25  VVSLGCCKNLVDSERMMGLLRQSGHEIVSDVHEAEAIIVNTCGFIEPAKEEAINTILEMA 84

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
             KN   ++     ++VAGC+AQ    ++    P V+  +    Y ++ ++L R   G++
Sbjct: 85  EYKNENCRK-----LIVAGCLAQRYKADLEAEMPEVDCFLTISDYPKMGQILTRV-LGEK 138

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRK------RGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           V+D                 GY +       +  TA+L I EGCD  C++C +P  RG  
Sbjct: 139 VLD-----------------GYGKNTRLVSTKPWTAYLKIAEGCDNRCSYCAIPGIRGGY 181

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +S  +  +V EA++L   GV E+ ++ Q+ + + G  L G +  + DLL  L+ I GL  
Sbjct: 182 VSFPIEDLVAEAKQLASEGVKELVVIAQDTSRY-GTDLYGRRRIW-DLLTELNAIDGLHW 239

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R    +P ++ D  +    DL  ++PY  +PVQ GSD++LK MNRR +     + +  I
Sbjct: 240 IRVLYLYPDEIDDEFVTGIKDLKKVIPYFDIPVQHGSDKMLKLMNRRGSVESILRTVKLI 299

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R       + +  IVGFP ET++DF+  +D + ++ + +  +F +S    TP   M  Q+
Sbjct: 300 RENYDMPVLRTTMIVGFPQETEEDFQMLIDFIKEVRWDRLGAFTFSNEEDTPAYTMDGQI 359

Query: 383 DENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR 431
            + +   + ERL+ +Q ++ ++     +A +G+ +EVL+E      G   GR
Sbjct: 360 SQEIMDERLERLMTVQNQIAQEN---GEALIGKTLEVLVENQDGLTGYYHGR 408


>gi|188586422|ref|YP_001917967.1| RNA modification enzyme, MiaB family [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179351109|gb|ACB85379.1| RNA modification enzyme, MiaB family [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 451

 Score =  183 bits (465), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 120/414 (28%), Positives = 217/414 (52%), Gaps = 31/414 (7%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDD-ADLIVLNTCHIREKAAEKVYSFLG 85
           F + + GC +N  +S  M       GY    + DD AD+ ++N+C + + AA K      
Sbjct: 10  FKIITLGCPLNQSESDLMRARLHQAGYSETGTGDDTADIYIINSCTVTQNAARK------ 63

Query: 86  RIRNLKNSRIKEGG--DLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
              + K +R  + G  D  V + GC  + E EEI  + P +++++G +          R 
Sbjct: 64  ---SRKEARKAKKGNPDAWVCLVGCYGEMEYEEIKEKIPEIDLIIGTRN---------RE 111

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           +  +++V  +  + ++F      D    R   +   + IQEGCD+ C++C+V   RG   
Sbjct: 112 KAIEKLVGQELDL-NQFHNFP-QDNNEIRPDKIRPAIKIQEGCDQSCSYCIVTLARGRPK 169

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK---CTFSDLLYSLSEIKGL 260
           SR   Q+  + +  ++ G  EI L G N+  + GK + G+      F DL   +SE+  L
Sbjct: 170 SREFRQIKQQVKSYLEEGYQEIILAGTNMGLY-GKDVKGQSKHSYKFIDLPMLVSELATL 228

Query: 261 ----VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
                R+R ++  P +M++ L+ A  + D +  YL+LP+QSGSDRILK MNR++T  ++ 
Sbjct: 229 PYDDYRIRISSLEPLEMTEELLYAMKEHDKICNYLYLPLQSGSDRILKLMNRKYTTDDFA 288

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
           +I+++ +++ P + I +D IVGFPGE ++D +ATM+ V+++  ++   F YSPR  T  +
Sbjct: 289 RIVEKAKTLLPGVGIMTDLIVGFPGEKEEDHKATMEFVEELKLSKLHVFPYSPRPKTLAA 348

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG 430
           +   QV  ++K  R   +++  ++    F    +   + VL E++ +   K++G
Sbjct: 349 SFNVQVRPDIKRARTEEMKELGQKLARRFYQENLNTRLRVLYERNYETSDKILG 402


>gi|116327128|ref|YP_796848.1| 2-methylthioadenine synthetase [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116332215|ref|YP_801933.1| 2-methylthioadenine synthetase [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
 gi|116119872|gb|ABJ77915.1| 2-methylthioadenine synthetase [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116125904|gb|ABJ77175.1| 2-methylthioadenine synthetase [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
          Length = 443

 Score =  183 bits (465), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 117/406 (28%), Positives = 213/406 (52%), Gaps = 27/406 (6%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           I  +     + GC++N ++S  +       G+  V   +  +++++NTC +  KA  K  
Sbjct: 6   IAERTVLFNTLGCRLNFFESDGLFSSLSKHGFRSVEVGEHPEVVIINTCTVTNKADSKN- 64

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL-L 140
                 RN   + IK+     + V GC A+ + E I    P V  VVG     +LP + L
Sbjct: 65  ------RNTIRNAIKKFPGSQIWVTGCYAETDRESI-EAIPGVAGVVGNTEKSKLPVMIL 117

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVD---GGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197
           E+    K ++D++  ++  ++R S  D    G+ R     A+L IQ+GC++ C++C +P 
Sbjct: 118 EK----KGLIDSNQLIQFSYDRFSYSDVLPNGHTR-----AYLKIQDGCNRRCSYCKIPQ 168

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE-KCTFSDLLYSLSE 256
            RG+ +SR    V+D+   L D+GV EI L G N+  +R    DGE K  F+ +L  + +
Sbjct: 169 ARGLGVSRKYQDVLDQVHFLQDHGVGEIVLTGVNLGWYR----DGENKKAFNKILADILK 224

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           I    R+R ++  P D+ + L++         P+LH+P+QSG+  ILK M R +T   +R
Sbjct: 225 ILEYSRIRISSIEPPDVGNELVELMTH-PRFTPFLHVPLQSGNAEILKKMKRTYTPETFR 283

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
           + ++  +   P++ + +D IVGFPGET++ F  ++ ++  +G+A+  +F +S R  T   
Sbjct: 284 KRVEIAKEKIPNLFLGTDIIVGFPGETEEMFLDSVKMIQDLGFAKIHAFPFSVRRNTLAE 343

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422
              + V + +K  R+  L    R+   +++ + +GQ+ E ++E+ G
Sbjct: 344 TFPDSVSKEIKKGRVHSLNSLSRKLHENYSLSVIGQVREAILEQGG 389


>gi|15644605|ref|NP_229658.1| hypothetical protein TM1862 [Thermotoga maritima MSB8]
 gi|81553760|sp|Q9X2H6|RIMO_THEMA RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|4982447|gb|AAD36924.1|AE001823_6 conserved hypothetical protein [Thermotoga maritima MSB8]
          Length = 430

 Score =  183 bits (465), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 138/455 (30%), Positives = 229/455 (50%), Gaps = 38/455 (8%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA----EKVY 81
           R  +K  GC  N  D   +  +    G+E V  + DAD++VL+TC   E A     ++++
Sbjct: 2   RVGIKVLGCPKNEADCEVLAGVLREGGHEIVFDVKDADVVVLDTCAFIEDAKRESIDEIF 61

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           SF+       +++ + G  L  VV GC+ Q   EE+ +  P V+  +G      +   +E
Sbjct: 62  SFV-------DAKDQYGYKL--VVKGCLVQRYYEELKKEIPEVDQWIGVADPEEIANAIE 112

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
                  V D   +V    +R+ + +  Y       A++ I +GCD+ CTFC +P  +G 
Sbjct: 113 NGT--DLVPDQPETVYRYRKRIDLEERPY-------AYVKISDGCDRGCTFCSIPSFKGS 163

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGL 260
             SRS+  +  E   L+  G  EI L+ Q+  ++   G+D   K    DLL  L+ + G 
Sbjct: 164 LRSRSIEDITREVEDLLKEGKKEIILVAQDTTSY---GIDLYRKQALPDLLRRLNSLNGE 220

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
             +R    HP  +++ +I A  +LD ++ Y  +PVQ GSD+ILK M R  ++ E ++++ 
Sbjct: 221 FWIRVMYLHPDHLTEEIISAMLELDKVVKYFDVPVQHGSDKILKLMGRTKSSEELKKMLS 280

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
            IR   PD  + +  IVGFPGET++DF      V++I + +  +F YS   GT   N+ E
Sbjct: 281 SIRERFPDAVLRTSIIVGFPGETEEDFEELKQFVEEIQFDKLGAFVYSDEEGTVAFNLKE 340

Query: 381 QVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----P 433
           +VD  +   + E LL LQ ++   ++   D  VG+ ++ L+E  GKE   LVGR+    P
Sbjct: 341 KVDPEMAKRRQEELLLLQAEISNSRL---DRFVGKKLKFLVE--GKEGKFLVGRTWTEAP 395

Query: 434 WLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            +  VV       IGD ++V I +     ++G ++
Sbjct: 396 EVDGVVFVRGKGKIGDFLEVVIKEHDEYDMWGSVI 430


>gi|282855982|ref|ZP_06265273.1| ribosomal protein S12 methylthiotransferase RimO [Pyramidobacter
           piscolens W5455]
 gi|282586201|gb|EFB91478.1| ribosomal protein S12 methylthiotransferase RimO [Pyramidobacter
           piscolens W5455]
          Length = 434

 Score =  183 bits (465), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 133/451 (29%), Positives = 215/451 (47%), Gaps = 27/451 (5%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +   + S GC  N  DS  +  +  + G+  V S ++AD+ ++NTC   + A E+    +
Sbjct: 2   KNLHIISLGCPKNAVDSEHLGGVLEAAGFRLVGSAEEADVALVNTCGFLQAAVEEGIQVI 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             +  LK    K G    + V GC+    G+E+    P V+     + +  L  L E  R
Sbjct: 62  LDLERLK----KAGVVRQIAVVGCMLNRYGDELKAEFPTVDFWAKSEDWGAL--LREMGR 115

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
                     + E    R  +    + R      +L I EGC+  C++C +P  RG   S
Sbjct: 116 ------GVPAAAESGCLRADLAGTPWTR------YLKISEGCNSRCSYCAIPGIRGRLRS 163

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS-EIKGLVRL 263
             + Q+V EAR+L+D G  E+ L+GQ ++ + G  L G + +   LL  L  E+   V L
Sbjct: 164 VPVEQIVGEARRLVDEGAKELCLVGQELSIY-GSDLFG-RPSLPRLLDELEKELPRGVWL 221

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R    HP  +    ++      V++P+L +P+Q   D +L+ MNR       R++  R R
Sbjct: 222 RLFYLHPSLVDAVFLERVAASPVILPWLDIPIQHVDDDVLRRMNRPPVERHIRELFARGR 281

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
            + PD A  +  +VGFPGET   F   +D V++IG+ +  +F YSP  GTP ++  +Q+ 
Sbjct: 282 EINPDFAFRTTLMVGFPGETRAQFDKLLDFVEEIGFDRLGAFPYSPEDGTPAASFPDQIP 341

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSV- 438
           E  K  R   L +  R+  ++     VG  + VLI++  +E G+ VGRS    P +  V 
Sbjct: 342 EEEKTARYNELMELQRQVSLTRQAHFVGHELNVLIDEVDEETGERVGRSFRDAPEIDGVV 401

Query: 439 -VLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            V  +     GD+I+V+IT      L GE +
Sbjct: 402 TVTGAGRARPGDMIRVKITASSEYDLSGEAI 432


>gi|262384855|ref|ZP_06077987.1| MiaB-like tRNA modifying enzyme [Bacteroides sp. 2_1_33B]
 gi|262293571|gb|EEY81507.1| MiaB-like tRNA modifying enzyme [Bacteroides sp. 2_1_33B]
          Length = 444

 Score =  183 bits (465), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 126/403 (31%), Positives = 202/403 (50%), Gaps = 22/403 (5%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N  ++  +  +   QG  +V   + AD+ V+NTC + E A +K    + RI   
Sbjct: 16  TLGCKLNFAETSTIGKLLAEQGVRKVRPGEKADICVVNTCSVTELADKKCRQAIRRIS-- 73

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLP---ELLERARFGK 147
                K+     +VV GC AQ + EE+      V++V+G +    +    E LE+   G 
Sbjct: 74  -----KQHPGAFIVVTGCYAQLKPEEVSHIEG-VDLVLGAEQKLEILQYLENLEKKEHGG 127

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
            V+ +       F      D   +R R    FL +Q+GCD +C++C +P+ RG   + ++
Sbjct: 128 TVIASQSKDIRSFSPSCSAD---DRTR---HFLKVQDGCDYYCSYCTIPFARGRSRNGTI 181

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
           + +V++AR++   G  EI L G N+  + GK  D    TF DL+ +L E++G+VR R ++
Sbjct: 182 ASMVEQAREVASKGGKEIVLTGVNIGDF-GKSTDE---TFIDLIRALDEVEGIVRYRISS 237

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
             P  ++D  I          P+ H+P+QSGSD +L+ M RR+    +R  I++I+ V P
Sbjct: 238 IEPNLITDEAIDFVAHSKRFAPHFHIPLQSGSDAVLQLMRRRYDTALFRHKIEKIKEVMP 297

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
              I  D IVG  GETD+ F      +D +  +Q   F YS R GT    +   VD   K
Sbjct: 298 HAFIGVDVIVGTRGETDEYFEEARQFIDSLDISQLHVFSYSERPGTQALKIDYVVDPKTK 357

Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG 430
             R   L     ++  +F +A +GQ   VL E H K+ GK+ G
Sbjct: 358 HARSQQLLDISDQKLHAFYEAHIGQEANVLFE-HTKKDGKMHG 399


>gi|161614891|ref|YP_001588856.1| ribosomal protein S12 methylthiotransferase [Salmonella enterica
           subsp. enterica serovar Paratyphi B str. SPB7]
 gi|238066592|sp|A9MSQ9|RIMO_SALPB RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|161364255|gb|ABX68023.1| hypothetical protein SPAB_02645 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 441

 Score =  183 bits (464), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 136/460 (29%), Positives = 231/460 (50%), Gaps = 41/460 (8%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  FV S GC  N+ DS R+     ++GY+ V   DDAD++++NTC   + A ++    
Sbjct: 8   PKIGFV-SLGCPKNLVDSERILTELRTEGYDVVPRYDDADMVIVNTCGFIDSAVQESLEA 66

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G   N       E G   V+V GC+   E ++I    P V  + GP +Y ++  L    
Sbjct: 67  IGEALN-------ENGK--VIVTGCLGAKE-DQIREVHPKVLEITGPHSYEQV--LQHVH 114

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            +  +     +      + + +    Y       A+L I EGC+  CTFC++P  RG  +
Sbjct: 115 HYVPKPKHNPFLSLVPEQDVKLTPRHY-------AYLKISEGCNHRCTFCIIPSMRGDLV 167

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYSLS 255
           SR +  V+ EA++L+D GV EI ++ Q+ +A+      R    +GE  K +   L   LS
Sbjct: 168 SRPIGDVLSEAKRLVDAGVKEILVISQDTSAYGVDVKHRTGFHNGEPVKTSMVSLCEQLS 227

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
           ++    RL Y   +P       + A G +   +PYL +P+Q  S RILK M R  +    
Sbjct: 228 KLGVWTRLHYVYPYPHVDDVIPLMAEGKI---LPYLDIPLQHASPRILKLMKRPGSVDRQ 284

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
              I + R + P++ + S FIVGFPGET++DF+  +D + +    +   FKYSP  G   
Sbjct: 285 LARIKQWREICPELTLRSTFIVGFPGETEEDFQMLLDFLKEARLDRVGCFKYSPVEGAGA 344

Query: 376 SNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVG 430
           +++ +QV E VK E   R + LQ+++  +++      VG+ I V++++  +E   G+ + 
Sbjct: 345 NDLPDQVPEEVKEERWNRFMQLQQQISAERLQEK---VGREILVIVDEVDEEGAIGRSMA 401

Query: 431 RSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468
            +P +   V  +   N+  GDI++V++ +     L+G  V
Sbjct: 402 DAPEIDGAVYLNGETNVKPGDIVRVKVENADEYDLWGSRV 441


>gi|190150967|ref|YP_001969492.1| hypothetical protein APP7_1698 [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|307257716|ref|ZP_07539474.1| Ribosomal protein S12 methylthiotransferase rimO [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|307262124|ref|ZP_07543776.1| Ribosomal protein S12 methylthiotransferase rimO [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|307264323|ref|ZP_07545912.1| Ribosomal protein S12 methylthiotransferase rimO [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|238065277|sp|B3H2N3|RIMO_ACTP7 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|189916098|gb|ACE62350.1| hypothetical protein APP7_1698 [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|306863781|gb|EFM95706.1| Ribosomal protein S12 methylthiotransferase rimO [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|306868192|gb|EFN00017.1| Ribosomal protein S12 methylthiotransferase rimO [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|306870387|gb|EFN02142.1| Ribosomal protein S12 methylthiotransferase rimO [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 443

 Score =  183 bits (464), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 132/459 (28%), Positives = 225/459 (49%), Gaps = 52/459 (11%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ DS R+     + GY  + S ++ADL+++NTC   + A ++    +G     
Sbjct: 11  SLGCPKNLVDSERILTELRTDGYNIIPSYENADLVIVNTCGFIDSAVQESLEAIGE---- 66

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               ++E G   V+V GC+   E + I    P V  + GP +Y  +  +    ++  R  
Sbjct: 67  ---ALEENGK--VIVTGCLGAKENQ-IREVHPKVLEITGPHSYEAV--MKHVHKYVPRPE 118

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
              Y+     + + +    Y       A+L I EGCD  CTFC++P  RG   SR + QV
Sbjct: 119 RNIYTSLVPAQGVKLTPKHY-------AYLKISEGCDHRCTFCIIPSMRGDLDSRPIVQV 171

Query: 211 VDEARKLIDNGVCEITLLGQNVNA---------------WRGKGLDGEKCTFSDLLYSLS 255
           +DEA++L D+GV E+ ++ Q+ +A               W G  +     T  + L SL 
Sbjct: 172 LDEAKRLADSGVKELLIVSQDTSAYALDQSKENQNKTVFWNGAPIKNNLITLCEQLGSLG 231

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
                VRL Y   +P       + A G +   +PYL +P+Q  S ++LK+M R       
Sbjct: 232 ---IWVRLHYVYPYPHVDDLIPLMAQGKI---LPYLDIPLQHASPKVLKAMKRPGAIDRT 285

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
            + I + R + P++ + S FIVGFPGET++DF+  +D +++    +   FK+SP  G   
Sbjct: 286 LERIKKWREICPELTLRSTFIVGFPGETEEDFQMLLDFLEEAQLDRVGCFKFSPVEGAVA 345

Query: 376 SNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVG 430
           + M +QV E+VK E   R + +Q+++   ++      VG+ + V+I++  +E   G+ + 
Sbjct: 346 TEMADQVSEDVKEERFHRFMQVQQRISAARLQQK---VGKTLAVIIDEIDEEGIIGRSMA 402

Query: 431 RSPWLQSVV----LNSKNHNIGDIIKVRITDVKISTLYG 465
            +P +  VV    L+ +   +G +I V IT+     L+G
Sbjct: 403 DAPEIDGVVYVDNLSEQEVKVGQVISVSITNADEYDLWG 441


>gi|291533186|emb|CBL06299.1| SSU ribosomal protein S12P methylthiotransferase [Megamonas
           hypermegale ART12/1]
          Length = 446

 Score =  183 bits (464), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 132/435 (30%), Positives = 212/435 (48%), Gaps = 21/435 (4%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ D+  M  +      E       AD++++NTC   + A E+  + +  +   
Sbjct: 8   SLGCSKNLVDTEVMLGILAKNNIEITAEPAKADILIVNTCTFIQSAKEESITTILNMAEY 67

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA-RFGKRV 149
           K     +G    +++AGC+ Q  G+E+L   P V+ +VG   + R+ E +E   +  KRV
Sbjct: 68  KQE--GKGKCRSLIIAGCMGQRYGQELLEEFPEVDAIVGTGAWSRIMEAVEATIQERKRV 125

Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209
           + T  S E      + +          +A++ I EGC+  C +C +PY RG   SR++  
Sbjct: 126 LITGESKE----IYTALTPRIFTTPFYSAYIKIAEGCNHRCAYCAIPYVRGNYRSRTIED 181

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSH 269
           +  E   L + GV E  ++ Q+   + G+ + G K +  +LL  L +I+ +  LR   ++
Sbjct: 182 IKQEVEALAEKGVKEFNIIAQDTTYY-GRDIYG-KPSLVELLKELVKIEKVKWLRIQYAY 239

Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329
           P   +D LI      D +  Y+ LP+Q   + +LK M R  T      ++ ++R   P +
Sbjct: 240 PHTFTDELIDLIASEDKICNYVDLPLQHAHNDVLKRMRRSDTKESVEALLAKLRERIPGV 299

Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAE 389
            I S FIVGFPGETD  +    + V+K  + +   F YS   GTP  +M  QVDEN+  E
Sbjct: 300 VIRSSFIVGFPGETDSQYTTLRNFVEKQRFDKVGIFSYSREEGTPAYDMPNQVDENIMQE 359

Query: 390 R---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWL--QSVVL 440
           R   L+ LQ K+ E   + N    G++++VLIE    E+    GRS    P +  Q  + 
Sbjct: 360 RYHDLMSLQSKISE---TINIEMEGKVLDVLIEGRDDEQHMAYGRSYREAPDVDGQVFIE 416

Query: 441 NSKNHNIGDIIKVRI 455
                  GDI+KVRI
Sbjct: 417 GDDISQPGDIVKVRI 431


>gi|257467388|ref|ZP_05631699.1| Fe-S oxidoreductase [Fusobacterium gonidiaformans ATCC 25563]
 gi|315918518|ref|ZP_07914758.1| Fe-S oxidoreductase [Fusobacterium gonidiaformans ATCC 25563]
 gi|313692393|gb|EFS29228.1| Fe-S oxidoreductase [Fusobacterium gonidiaformans ATCC 25563]
          Length = 436

 Score =  183 bits (464), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 128/443 (28%), Positives = 232/443 (52%), Gaps = 24/443 (5%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +R    + GC++N Y+S  +++    +GYE V+    AD+ ++N+C +   A  K  + L
Sbjct: 5   KRVAFYTLGCKVNQYESESIKNQLLQKGYEEVDFESIADIYIVNSCTVTSIADRKTRNML 64

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R +       K+     V+V GC A+   +++L    I + V+G +    + + ++   
Sbjct: 65  RRAK-------KQNPSGKVIVTGCYAETNRKDLLEMEEI-DFVIGNKDKSAVAKFVQEIH 116

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT-AFLTIQEGCDKFCTFCVVPYTRGIEI 203
             +RV       E  F+     +  +   R +T A++ IQ+GC++FC++C +P+ RG   
Sbjct: 117 TQERVEKK----ESIFQEKEYQEYEFATFREMTRAYVKIQDGCNEFCSYCKIPFARGKSR 172

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR   +V++E  KL+  G  EI L+G N+  + GK L+G+  +F  L+  + +   L R+
Sbjct: 173 SRKQEKVLEEIDKLLMEGFQEIILIGINLGDY-GKDLEGD-TSFETLVQEILKRDSLKRV 230

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R  + +P  ++D  I    +   +MP+LH+ +QS  D +L++M R++        +  +R
Sbjct: 231 RIGSVYPDRITDSFISLFKNPK-MMPHLHISLQSCDDTVLRNMKRKYGRELILSSLSSLR 289

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              P +  ++D IVGFPGET++ F+ T   +++IG++    F YS R GT  S M  ++ 
Sbjct: 290 KEVPSMEYTADIIVGFPGETEEMFQNTYASLEEIGFSHLHIFPYSDREGTLASRMKNKLS 349

Query: 384 ENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440
             +K ER   L  LQKK+ E +     A +G+ IEVLIE+   + G   G SP    V +
Sbjct: 350 PEIKKERVTILENLQKKVEEDR---RKAYLGKTIEVLIEEE--KDGYWWGYSPNYLRVKV 404

Query: 441 NSKNHNIGDIIKVRITDVKISTL 463
             ++ ++  +++V+I  V+   L
Sbjct: 405 KGEDISVNCLVQVKIEKVEKGVL 427


>gi|188586093|ref|YP_001917638.1| MiaB-like tRNA modifying enzyme YliG [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|238066413|sp|B2A3C0|RIMO_NATTJ RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|179350780|gb|ACB85050.1| MiaB-like tRNA modifying enzyme YliG [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 444

 Score =  183 bits (464), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 128/449 (28%), Positives = 225/449 (50%), Gaps = 26/449 (5%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N  D+  M+ +  +  Y+  +   DAD+I++NTC   + A E+    +     L
Sbjct: 7   SLGCAKNQVDTEVMQGILENSNYKMTDDYYDADIIIVNTCGFIDDAKEESVDHI-----L 61

Query: 91  KNSRIKEGGDL-LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149
           + +++KE G L +++VAGC++Q   E +    P ++ ++G  T  ++ E++  A  G  +
Sbjct: 62  EVAQLKETGKLKVLIVAGCLSQRYQESLKEEIPEIDAMIGTDTQDKITEVISSALKGNYI 121

Query: 150 VDTDYSVEDKFERLSIVDGGYNRKR----GVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                     ++RL+ +D     ++    G +A++ I EGC  +C++C +P  RG   SR
Sbjct: 122 --------SFYDRLNKIDEQLFLRQPYQPGPSAYIKIAEGCHNYCSYCAIPLIRGGYRSR 173

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           ++  +  EA   I+ G  E+TL+ Q+   + G  + G K +   LL  L+ I G   +R 
Sbjct: 174 TIEDIKIEANHFIEKGSKELTLIAQDTTNY-GSDIYG-KFSLDTLLDELATIPGDFWIRV 231

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
             ++P  ++D LI+     + +  YL +P+Q   D IL SMNR     +   +I  +R  
Sbjct: 232 LYAYPTRITDSLIEVINRHEKICSYLDIPLQHIDDDILTSMNRGGNKEQILNLIHNLRKN 291

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            PDI + +  IVGFPGETD+ ++  +  + +I +  A  FKYS    T   N  ++V E+
Sbjct: 292 IPDITLRTSLIVGFPGETDEKYQNLISFMQEIEFDHAGIFKYSDEEDTQAYNFKDKVSED 351

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-----GKLVGRSPWLQ-SVV 439
           VK +R     +  +E     N+  VG  + VLIE+  +++     G+  G +P +  +V+
Sbjct: 352 VKEQRYQEAWEVQKEITRKKNEGLVGTEMRVLIEEALEDEPTTKVGRTEGHAPEVDGAVI 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
           +     + GD I V I       L GE+ 
Sbjct: 412 IPDCEASSGDFINVEIVQALDYDLIGEMT 440


>gi|94263643|ref|ZP_01287452.1| conserved hypothetical protein [delta proteobacterium MLMS-1]
 gi|93455948|gb|EAT06103.1| conserved hypothetical protein [delta proteobacterium MLMS-1]
          Length = 452

 Score =  183 bits (464), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 142/467 (30%), Positives = 230/467 (49%), Gaps = 49/467 (10%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEK-VYSFLGRI 87
           + S GC  N+ DS  M  +   +G   V   ++ADL+++NTC   + A E+ + + LG +
Sbjct: 6   LTSLGCPKNLVDSEVMLGLLLERGLTVVGEPEEADLLLVNTCGFIQSAVEEGIDTILGLV 65

Query: 88  RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147
              +   +K      VVVAGC+ +  G E+ R  P V++ +GP+         E A  G+
Sbjct: 66  ERKREPAVK------VVVAGCMVKRYGAELARELPEVDLFLGPE---------EVATIGR 110

Query: 148 RVVDTDYSVE--------DKFERLS-----IVDGGYNRKRGVT---AFLTIQEGCDKFCT 191
           R+ D+  + E         +F   S     +++    RK       A+L + EGCD  C+
Sbjct: 111 RL-DSLLAAEPAAGPGGGSRFYEQSDLPHFLMNASLPRKLATPSHRAYLKVTEGCDNRCS 169

Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT-FSDL 250
           +C++P  RG   SR L  ++ EAR L   GV E+TL+ Q++ A+   GLD        +L
Sbjct: 170 YCLIPALRGPLRSRPLPDLLLEARALAAAGVKELTLVAQDLTAY---GLDQRGAPRLPEL 226

Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
           L +L     +  LR    +P  + + L++   +   L+PY  LP Q  +D +LK+MNR +
Sbjct: 227 LKALLAETAIPWLRLLYLYPSRVDEGLLRLVAENPRLLPYFDLPFQHVADHLLKAMNRPY 286

Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370
                RQ++ RIR + P+ AI S FIVGFPGE+++D +     +      Q   F Y P 
Sbjct: 287 GEKLIRQLVGRIRQLVPEAAIRSTFIVGFPGESEEDSQRLAAFLRDCRLEQVGIFTYYPE 346

Query: 371 LGTPGSNMLEQVDENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE--- 424
            G+P + + +Q D+ +K  R   L+ LQ  +  Q    N A +G   EVL+E    E   
Sbjct: 347 EGSPAAELPDQCDDQLKEGRRRQLMALQADISLQ---INRARIGTRQEVLVEGVSAETDL 403

Query: 425 --KGKLVGRSPWLQSVV-LNSKNHNIGDIIKVRITDVKISTLYGELV 468
             +G+L  ++P +   V +   N   GD+++VRI +     L G + 
Sbjct: 404 LLEGRLRQQAPEVDGCVYITEGNCRPGDLVQVRIDEAHPYDLVGAIT 450


>gi|196230124|ref|ZP_03128987.1| MiaB-like tRNA modifying enzyme YliG [Chthoniobacter flavus
           Ellin428]
 gi|196225721|gb|EDY20228.1| MiaB-like tRNA modifying enzyme YliG [Chthoniobacter flavus
           Ellin428]
          Length = 480

 Score =  183 bits (464), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 136/484 (28%), Positives = 237/484 (48%), Gaps = 49/484 (10%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
            P++  + S GC  N+ D+  M     S+G +  ++ D+AD++++NTC   + A E+   
Sbjct: 7   TPKKVGMISLGCAKNLVDAEIMLGGVLSKGMQITSNADEADVLIVNTCAFIDSAKEESIE 66

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +      +  + + G  L  +V+GC+AQ   +E+    P V+  +G         ++E+
Sbjct: 67  AILEAHESRGLKKRAGQRL--IVSGCMAQRFAKELTHEMPEVDAFIGLDQVADAAGIIEQ 124

Query: 143 ARFGKRVVDT--------DYSVEDKFERLSIVD------GGYNRKR-----GVTAFLTIQ 183
             F +             D  +++++E L++V         Y+  R       TAF  I 
Sbjct: 125 V-FSRPAAPVPAAKAKAPDVLLDEQWEPLNLVTRKPVYIPDYDTPRFRLTPAHTAFTKIA 183

Query: 184 EGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQN-----VNAWRGK 238
           EGC+  C+FCV+P  RG   SR++  VV E R L+  GV EI L+ Q+     ++ W  K
Sbjct: 184 EGCNHPCSFCVIPQMRGKHRSRTIESVVAEVRSLVAEGVKEINLISQDTTYFGMDLWEEK 243

Query: 239 G-----LDGEK-CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLH 292
                 +D  +  T   LL  L +I+G   +R   +HP   SD LI    +   +  Y+ 
Sbjct: 244 AGPRQQVDSSRGPTLIKLLRELDKIEGDFWIRLLYTHPAHWSDELIACIAECKKVCRYID 303

Query: 293 LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352
           +P+Q    R+L+ M R  ++     +I RIR+  P IAI + FIVGFPGETD++F   +D
Sbjct: 304 MPLQHIHPRMLELMRRETSSEHIENLIARIRAGIPGIAIRTTFIVGFPGETDEEFNYLLD 363

Query: 353 LVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA---ERLLCLQKKLREQQVSFNDAC 409
            +++  + +   F YS   G+  + M +QV + VKA   +R + LQ+K+  +    ++  
Sbjct: 364 FIERTRFERLGVFTYSQEEGSRAAKMDDQVPQKVKAARYKRAMKLQQKIARE---ISETQ 420

Query: 410 VGQIIEVLIEKHGKEKGKLVGR----SPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYG 465
           VGQ +  ++++       LV R    +P +   +L S    +G+ I V IT  ++  L G
Sbjct: 421 VGQRVRAVVDQ------PLVARAAADAPDIDGRILLSSPAPVGEFIDVEITGTQVYDLVG 474

Query: 466 ELVV 469
           + ++
Sbjct: 475 DPIL 478


>gi|33591749|ref|NP_879393.1| hypothetical protein BP0545 [Bordetella pertussis Tohama I]
 gi|33594966|ref|NP_882609.1| hypothetical protein BPP0250 [Bordetella parapertussis 12822]
 gi|81424079|sp|Q7VS95|RIMO_BORPE RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|81425780|sp|Q7W1U6|RIMO_BORPA RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|33565042|emb|CAE39991.1| conserved hypothetical protein [Bordetella parapertussis]
 gi|33571392|emb|CAE44873.1| conserved hypothetical protein [Bordetella pertussis Tohama I]
 gi|332381166|gb|AEE66013.1| hypothetical protein BPTD_0554 [Bordetella pertussis CS]
          Length = 439

 Score =  183 bits (464), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 151/471 (32%), Positives = 230/471 (48%), Gaps = 60/471 (12%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  FV S GC   + DS R+     ++GYE     +DAD++V+NTC   + A  +    
Sbjct: 4   PKVGFV-SLGCPKALVDSERILTQLRTEGYEVTPEYNDADVVVVNTCGFIDSAKAESLEA 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRR-SPIVNVVVGPQTYYRLPELLER 142
           +G         I E G   V+V GC+   E   ++R+  P V  V GPQ Y    E + R
Sbjct: 63  IGEA-------IAENGK--VIVTGCMGVEES--VIRQVHPSVLAVTGPQQY----EEVVR 107

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           A  G      D++       L +V   G        A+L I EGC+  C+FC++P  RG 
Sbjct: 108 AVHGVAPPRQDHN-----PYLDLVPPQGVKLTPRHYAYLKISEGCNHRCSFCIIPSMRGD 162

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDL 250
            +SR +  V+ EA +L+  GV E+ ++ Q+ +A           W G+ +   K   ++L
Sbjct: 163 LVSRPVGDVLSEAERLVRAGVKELLVISQDTSAYGVDIKYRSGFWNGRPV---KTRMTEL 219

Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
             +LSE+    RL Y   +P    D +I    D  VL PYL +P Q  S RIL++M R  
Sbjct: 220 CAALSELGVWTRLHYVYPYPH--VDEVIGLMADGKVL-PYLDIPFQHASPRILRAMKR-- 274

Query: 311 TAYEYRQI--IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
            A+E + +  I R R   PD+ + S FIVGFPGET++DF+  +D + +    +   F+YS
Sbjct: 275 PAFEDKTLARIKRWREECPDLTLRSTFIVGFPGETEEDFQYLLDWMSEAQLDRVGCFQYS 334

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDA----CVGQIIEVLIEKHGKE 424
           P  G P + +   V + VK ER     ++  E Q + + A     VG+ I+VLI+   +E
Sbjct: 335 PVEGAPANTLDNPVPDEVKQERW----ERFMEHQQAISTARLSTRVGREIDVLIDSVDEE 390

Query: 425 KGKLVGRS----PWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELVV 469
               VGRS    P +   V       +  GD+++VR+TD     L+GE + 
Sbjct: 391 GA--VGRSSADAPEIDGCVYVDSEQPLKAGDMVRVRVTDSDEYDLWGERIA 439


>gi|188589640|ref|YP_001920630.1| hypothetical protein CLH_1236 [Clostridium botulinum E3 str. Alaska
           E43]
 gi|238065362|sp|B2V4I1|RIMO_CLOBA RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|188499921|gb|ACD53057.1| conserved hypothetical protein [Clostridium botulinum E3 str.
           Alaska E43]
          Length = 446

 Score =  183 bits (464), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 133/436 (30%), Positives = 228/436 (52%), Gaps = 28/436 (6%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N  DS  +     S+ YE  N+  +AD+I++NTC   E A ++    +  +   
Sbjct: 10  SLGCDKNRVDSEIILGKMSSE-YEITNNAKEADVIIVNTCGFIESAKQESIDTILEMAEY 68

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL----PELLERARFG 146
           KN+        L++  GC+ Q  G+E+    P +++++G   Y ++     E +E  +  
Sbjct: 69  KNNY----NCKLLIATGCLIQRYGDELKNLIPEIDIMLGVNDYNKIDRVITEFIEGNKEA 124

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
            ++++  YS E+  E + I+       +  +A++ I EGC+ FCT+C++P  RG   SR 
Sbjct: 125 SKLLN--YSDENINEGIRIL-----TTQKESAYIRIAEGCNNFCTYCIIPKIRGKFRSRR 177

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
           +  ++ EA  L   GV E+ L+ Q+   + G  + G+K     LL  LS I+G+  +R  
Sbjct: 178 MENIISEATDLASKGVKELILIAQDTTQY-GSDIYGKK-NLHILLKELSNIEGIKWIRVL 235

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
             +P  + D LI+     D ++ YL +P+Q  SD +LK M R+ +  +    I+++R+  
Sbjct: 236 YCYPEAIYDELIEEIAANDKVVKYLDIPIQHISDHVLKLMGRKTSKKDITDKIEKLRNKI 295

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           P+I I + FIVGFP ET +DF   ++ + +    +   FKYS    TP S M  Q+DE++
Sbjct: 296 PNIVIRTTFIVGFPQETQEDFEEILEFLQEYKLDKVGVFKYSREEDTPASKMDGQIDESI 355

Query: 387 KAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE--KGKLVGRSPWLQ-SVVL 440
           K ER   L+  Q+K+     + N   V +  ++LIE++  E  KG+    +P +  +V L
Sbjct: 356 KEEREEKLMLSQEKISN---NINKLKVDKKYDILIEEYDGEFYKGRNFEMAPDIDGNVFL 412

Query: 441 NS-KNHNIGDIIKVRI 455
            S K   IG+ +KV+I
Sbjct: 413 ESPKKLEIGEFVKVKI 428


>gi|170288753|ref|YP_001738991.1| MiaB-like tRNA modifying enzyme YliG [Thermotoga sp. RQ2]
 gi|238055229|sp|B1LAG0|RIMO_THESQ RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|170176256|gb|ACB09308.1| MiaB-like tRNA modifying enzyme YliG [Thermotoga sp. RQ2]
          Length = 430

 Score =  183 bits (464), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 137/452 (30%), Positives = 226/452 (50%), Gaps = 38/452 (8%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA----EKVY 81
           R  +K  GC  N  D   +  +   +G+E V  + DAD++VL+TC   E A     ++++
Sbjct: 2   RVGIKVLGCPKNEADCEILAGVLRERGHEIVFDVKDADVVVLDTCAFIEDAKRESIDEIF 61

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           SF+           K+     +VV GC+ Q   EE+ +  P V+  +G      +   LE
Sbjct: 62  SFID---------AKDQYSYKLVVKGCLVQRYYEELKKEIPEVDQWIGVVDPEEIANALE 112

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           +      V +   +V    +R+ + +  Y       A++ I +GCD+ CTFC +P  +G 
Sbjct: 113 KG--TDLVPNRPETVYRYRKRIDLEERPY-------AYVKISDGCDRGCTFCSIPSFKGS 163

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGL 260
             SRS+  +  E   L+  G  EI L+ Q+  ++   G+D   K    DLL  L+ + G 
Sbjct: 164 LRSRSIEDITHEVEDLLKEGKKEIILVAQDTTSY---GIDLYRKQALPDLLRRLNSLNGE 220

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
             +R    HP  +++ +I A  +LD ++ Y  +PVQ GSD+ILK M R  ++ E ++++ 
Sbjct: 221 FWIRVMYLHPDHLTEEIISAMLELDKVVKYFDVPVQHGSDKILKLMGRTKSSEELKKMLS 280

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
            IR   PD  + +  IVGFPGET++DF      V++I + +  +F YS   GT   N+ E
Sbjct: 281 SIRERFPDAVLRTSIIVGFPGETEEDFEELKRFVEEIQFDKLGAFVYSDEEGTVAFNLKE 340

Query: 381 QVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----P 433
           +VD  V   + E LL LQ ++   ++   D  +G+ ++ L+E  GKE   LVGR+    P
Sbjct: 341 KVDPEVAKRRQEELLLLQAEISNSRL---DRFIGRKLKFLVE--GKEGKFLVGRTWTEAP 395

Query: 434 WLQSVVLNSKNHNIGDIIKVRITDVKISTLYG 465
            +  VV       IGD ++V I +     ++G
Sbjct: 396 EVDGVVFVRGKGKIGDFLEVVIKEHDEYDMWG 427


>gi|119773625|ref|YP_926365.1| ribosomal protein S12 methylthiotransferase [Shewanella amazonensis
           SB2B]
 gi|119766125|gb|ABL98695.1| MiaB-like putative RNA modifying enzyme YliG [Shewanella
           amazonensis SB2B]
          Length = 493

 Score =  183 bits (464), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 145/471 (30%), Positives = 228/471 (48%), Gaps = 42/471 (8%)

Query: 15  SQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIRE 74
           ++  D  I   R    S GC  N+ DS R+       GYE  NS D+ADL+++NTC   +
Sbjct: 46  AKASDGTIQGNRIGFVSLGCPKNLVDSERILTQLRIDGYEVTNSYDNADLVIVNTCGFID 105

Query: 75  KAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYY 134
            A E+    L  +R      ++E G   V+V GC+   E  +I    P V  + GP +Y 
Sbjct: 106 AAVEES---LDAVREA----LEENGK--VIVTGCLGAKEN-QIREVHPDVLEITGPHSYE 155

Query: 135 RLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCV 194
            +          K V   ++   + F  L I   G        A+L I EGCD  CTFC+
Sbjct: 156 AV-----LNHVHKYVPKPEH---NPFTSL-IPQTGVKLTPKHYAYLKISEGCDNRCTFCI 206

Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE---------KC 245
           +P  RG   SR +  V+DEA++L+++GV EI ++ Q+ +A+ GK  DG          K 
Sbjct: 207 IPALRGDLDSRGVGSVLDEAKRLVESGVQEILVVSQDTSAY-GKDKDGRTDFWNGMPVKQ 265

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
             + L   L ++   VRL Y   +P    D LI    +  +++PYL LP+Q  S R+LK 
Sbjct: 266 DITSLARQLGKMGAWVRLHYVYPYP--WVDDLIPLMAE-GLILPYLDLPLQHASPRVLKM 322

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           M R          I + R + PD+ I S FIVGFPGET++DF   +D + +    +   F
Sbjct: 323 MKRPGRVDRQLDAIKKWREICPDLVIRSTFIVGFPGETEEDFEMLLDFLREARLDRVGCF 382

Query: 366 KYSPRLGTPGSNMLEQVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422
           KYS   G   + + E + E VK    ER + +Q ++  ++++     VG+ +++LI+   
Sbjct: 383 KYSEVDGAVANTLAELISEEVKEDRYERFMEVQAEISAERLA---RLVGRELDILIDDVD 439

Query: 423 KEK--GKLVGRSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELVV 469
           +E   G+    +P +  +V  +    +  GD+++ RI       L+ ELV 
Sbjct: 440 EEGAIGRSYADAPEIDGMVFINGETELTPGDMVRARIVASDEHDLWAELVA 490


>gi|238066632|sp|A1S2T9|RIMO_SHEAM RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
          Length = 474

 Score =  182 bits (463), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 144/471 (30%), Positives = 227/471 (48%), Gaps = 42/471 (8%)

Query: 15  SQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIRE 74
           ++  D  I   R    S GC  N+ DS R+       GYE  NS D+ADL+++NTC   +
Sbjct: 27  AKASDGTIQGNRIGFVSLGCPKNLVDSERILTQLRIDGYEVTNSYDNADLVIVNTCGFID 86

Query: 75  KAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYY 134
            A E+    L  +R      ++E G   V+V GC+   E  +I    P V  + GP +Y 
Sbjct: 87  AAVEES---LDAVREA----LEENGK--VIVTGCLGAKEN-QIREVHPDVLEITGPHSYE 136

Query: 135 RLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCV 194
            +          K V   ++   + F  L I   G        A+L I EGCD  CTFC+
Sbjct: 137 AV-----LNHVHKYVPKPEH---NPFTSL-IPQTGVKLTPKHYAYLKISEGCDNRCTFCI 187

Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE---------KC 245
           +P  RG   SR +  V+DEA++L+++GV EI ++ Q+ +A+ GK  DG          K 
Sbjct: 188 IPALRGDLDSRGVGSVLDEAKRLVESGVQEILVVSQDTSAY-GKDKDGRTDFWNGMPVKQ 246

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
             + L   L ++   VRL Y   +P       + A G   +++PYL LP+Q  S R+LK 
Sbjct: 247 DITSLARQLGKMGAWVRLHYVYPYPWVDDLIPLMAEG---LILPYLDLPLQHASPRVLKM 303

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           M R          I + R + PD+ I S FIVGFPGET++DF   +D + +    +   F
Sbjct: 304 MKRPGRVDRQLDAIKKWREICPDLVIRSTFIVGFPGETEEDFEMLLDFLREARLDRVGCF 363

Query: 366 KYSPRLGTPGSNMLEQVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422
           KYS   G   + + E + E VK    ER + +Q ++  ++++     VG+ +++LI+   
Sbjct: 364 KYSEVDGAVANTLAELISEEVKEDRYERFMEVQAEISAERLA---RLVGRELDILIDDVD 420

Query: 423 KEK--GKLVGRSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELVV 469
           +E   G+    +P +  +V  +    +  GD+++ RI       L+ ELV 
Sbjct: 421 EEGAIGRSYADAPEIDGMVFINGETELTPGDMVRARIVASDEHDLWAELVA 471


>gi|260597230|ref|YP_003209801.1| ribosomal protein S12 methylthiotransferase [Cronobacter turicensis
           z3032]
 gi|260216407|emb|CBA29484.1| Ribosomal protein S12 methylthiotransferase rimO [Cronobacter
           turicensis z3032]
          Length = 441

 Score =  182 bits (463), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 139/465 (29%), Positives = 233/465 (50%), Gaps = 51/465 (10%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  FV S GC  N+ DS R+     ++GY+ V   DDAD++++NTC   + A ++    
Sbjct: 8   PKIGFV-SLGCPKNLVDSERILTELRTEGYDVVPRYDDADMVIVNTCGFIDSAVQESLEA 66

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G   N       E G   V+V GC+   E ++I    P V  + GP +Y ++ + +   
Sbjct: 67  IGEALN-------ENGK--VIVTGCLGAKE-DQIREVHPKVLEITGPHSYEQVLQHVHH- 115

Query: 144 RFGKRVVDTDYSVEDKFER-LSIV-DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
                     Y  + K    LS+V + G        A+L I EGC+  CTFC++P  RG 
Sbjct: 116 ----------YVPKPKHNPFLSLVPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGD 165

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDL 250
             SR +  V+ EA++L++ GV E+ ++ Q+ +A           W G  +   K +   L
Sbjct: 166 LDSRPIGDVLAEAKRLVEAGVKELLVISQDTSAYGVDVKHRTGFWNGSPV---KTSMVSL 222

Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
              L+++   VRL Y   +P       + A G +   +PYL +P+Q  S RILK M R  
Sbjct: 223 CEQLAKLGVWVRLHYVYPYPHVDDVIPLMAEGKI---LPYLDIPLQHASPRILKLMKRPG 279

Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370
           +       I + R + P++ + S FIVGFPGET++DF+  +D + +    +   FKYSP 
Sbjct: 280 SVDRQLARIKQWREICPELTLRSTFIVGFPGETEEDFQMLLDFLKEARLDRVGCFKYSPV 339

Query: 371 LGTPGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-- 425
            G   +++ +QV E VK E   R + LQ+++  +++      VG+ I V+I++   E   
Sbjct: 340 EGATANDLADQVPEEVKEERWNRFMALQQQISAERLQEK---VGREILVIIDEVDDEGAI 396

Query: 426 GKLVGRSPWLQ-SVVLNSKNH-NIGDIIKVRITDVKISTLYGELV 468
           G+ +  +P +  +V LN +     GD+++V++ +     L+G LV
Sbjct: 397 GRSMADAPEIDGAVYLNGETTLKPGDVVRVKVENADEYDLWGSLV 441


>gi|291519359|emb|CBK74580.1| SSU ribosomal protein S12P methylthiotransferase [Butyrivibrio
           fibrisolvens 16/4]
          Length = 442

 Score =  182 bits (463), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 131/427 (30%), Positives = 214/427 (50%), Gaps = 59/427 (13%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ DS  M      +G+   +   +AD+IV+NTC     A E+       I+N+
Sbjct: 7   SLGCDKNLVDSEHMLGDLIEEGFTICDDEAEADIIVVNTCSFIADAMEE------SIQNI 60

Query: 91  KN-SRIKEGGDLL-VVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPE----LLER-- 142
            +  + KE G+L  ++V GC+AQ   +EIL   P V+ ++G  +Y  L +    +LE+  
Sbjct: 61  IDMGQYKENGNLKGLIVTGCLAQRFTDEILADLPEVDAIIGTNSYDELLKAINIVLEKNG 120

Query: 143 ------------ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190
                        R GKRV+ T               GG+        +L I EGC+K C
Sbjct: 121 EKPIIKKPLTGLPRNGKRVLTT---------------GGH------YGYLKIAEGCNKRC 159

Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSD 249
           T+C++PY RG   S  + +++ EA++L+ +GV EI L+ Q    +   G+D   K +  +
Sbjct: 160 TYCIIPYIRGDYRSVPMEEILSEAKQLVADGVKEIILVAQETTVY---GMDIYNKKSLPE 216

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
           LL  L EI GL  +R   ++P +++D LI+       +  Y+ +P+Q  +D +L+ M R+
Sbjct: 217 LLNKLCEIDGLEWIRILYAYPEEITDELIECMASQPKICHYIDMPIQHCNDELLRKMGRK 276

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369
               +   I  R+R   PDI++ +  I GFPGET++  +  +  +  + + +  +F YS 
Sbjct: 277 TNKADIMNIAARLREAMPDISLRTTLICGFPGETEEMHQELLQFIKDMQFDRLGAFAYSK 336

Query: 370 RLGTPGSNMLEQVDENVKA----ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK 425
             GT  +    QVDE++K     E +LC QK +    +S N+  VG+ I V IE    E 
Sbjct: 337 EDGTVAATWDNQVDEDLKHKWQDEVMLC-QKDI---SMSNNEKYVGRTIPVFIEGKLPED 392

Query: 426 GKLVGRS 432
           G  +GR+
Sbjct: 393 GVFIGRT 399


>gi|148642905|ref|YP_001273418.1| 2-methylthioadenine synthetase, MiaB [Methanobrevibacter smithii
           ATCC 35061]
 gi|222445138|ref|ZP_03607653.1| hypothetical protein METSMIALI_00759 [Methanobrevibacter smithii
           DSM 2375]
 gi|148551922|gb|ABQ87050.1| 2-methylthioadenine synthetase, MiaB [Methanobrevibacter smithii
           ATCC 35061]
 gi|222434703|gb|EEE41868.1| hypothetical protein METSMIALI_00759 [Methanobrevibacter smithii
           DSM 2375]
          Length = 426

 Score =  182 bits (463), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 131/447 (29%), Positives = 232/447 (51%), Gaps = 28/447 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + ++ +YGC  N  D+  M  +      + V+S + AD+I++NTC+++     KV   + 
Sbjct: 2   KVYIDTYGCTFNKADAQIMGGVLKENHIDLVDSPELADVIIVNTCYVKLPTENKV---VY 58

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           +I+ L+    ++  D  V+V+GC+ + + E++ + +P  + + GP    +  +++     
Sbjct: 59  KIQQLQ----EKFPDKKVIVSGCMVEIDPEKLEKVAPDCSWI-GPHQLNKTADVVNGTYC 113

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G+ + +  +S + K     + DG       +   + I EGC   CTFC   + RG   S 
Sbjct: 114 GRVIRECGFSKDSKVGVPKVSDGS------LIHIIQIAEGCLGACTFCCTRFARGPLNSY 167

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLR 264
            +  +V EA+K ID+G  EI L  Q+  A+   G D GEK   SDL+  ++ + G  R+R
Sbjct: 168 PIKDIVAEAKKAIDDGAVEIQLTAQDTAAF---GYDSGEK--LSDLIKEVANLDGEFRVR 222

Query: 265 YTTSHPRDM---SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
               HP+++    D +I A     V   ++HLPVQ+GS+++L  M R HT  +Y  I+ +
Sbjct: 223 VGMMHPKNILNNVDEIIDAIKHPKVYN-FIHLPVQTGSNKVLSEMRRGHTLDQYLDIVSK 281

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
            +S  PD+ ++ D IVG+P E+D+DF+ T+DL+  I  +     KY  R G   S+ L++
Sbjct: 282 FKSEIPDLTLAVDIIVGYPTESDEDFQLTVDLLRNIKPSLIHLSKYQHRKGAVSSS-LKE 340

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           +   V  +R   L +   E     N   VG +   ++ + G  KG  + ++     V+++
Sbjct: 341 IPHEVMKKRSRNLSRIKTEITEEENKELVGSVQNAVVVEVG-SKGGFIAKTDSYIPVIVD 399

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
               N+GD IKV+ITD   + L G++V
Sbjct: 400 GV--NLGDFIKVKITDATATYLKGDVV 424


>gi|267992608|gb|ACY87493.1| putative FeS oxidoreductase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
          Length = 441

 Score =  182 bits (463), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 139/462 (30%), Positives = 232/462 (50%), Gaps = 45/462 (9%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  FV S GC  N+ DS R+     ++GY+ V   DDAD++++NTC   + A ++    
Sbjct: 8   PKIGFV-SLGCPKNLVDSERILTELRTEGYDVVPRYDDADMVIVNTCGFIDSAVQESLEA 66

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G   N       E G   V+V GC+   E ++I    P V  + GP +Y ++ + +   
Sbjct: 67  IGEALN-------ENGK--VIVTGCLGAKE-DQIREVHPKVLEITGPHSYEQVLQHVHH- 115

Query: 144 RFGKRVVDTDYSVEDKFER-LSIV-DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
                     Y  + K    LS+V + G        A+L I EGC+  CTFC++P  RG 
Sbjct: 116 ----------YVPKPKHNPFLSLVPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGD 165

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYS 253
            +SR +  V+ EA++L+D GV EI ++ Q+ +A+      R    +GE  K +   L   
Sbjct: 166 LVSRPIGDVLSEAKRLVDAGVKEILVISQDTSAYGVDVKHRTGFHNGEPVKTSMVSLCEQ 225

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
           LS++    RL Y   +P       + A G +   +PYL +P+Q  S RILK M R  +  
Sbjct: 226 LSKLGVWTRLHYVYPYPHVDDVIPLMAEGKI---LPYLDIPLQHASPRILKLMKRPGSVD 282

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
                I + R + P++ + S FIVGFP ET++DF+  +D + +    +   FKYSP  G 
Sbjct: 283 RQLARIKQWREICPELTLRSTFIVGFPAETEEDFQMLLDFLKEARLDRVGCFKYSPVEGA 342

Query: 374 PGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKL 428
             + + +QV E VK E   R + LQ+++  +++      VG+ I V++++  +E   G+ 
Sbjct: 343 GANELPDQVPEEVKEERWNRFMQLQQQISAERLQEK---VGREILVIVDEVDEEGAIGRS 399

Query: 429 VGRSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468
           +  +P +   V  +   N+  GDI++V++ +     L+G  V
Sbjct: 400 MADAPEIDGAVYLNGETNVKPGDIVRVKVENADEYDLWGSRV 441


>gi|167035212|ref|YP_001670443.1| ribosomal protein S12 methylthiotransferase [Pseudomonas putida
           GB-1]
 gi|238066511|sp|B0KTL0|RIMO_PSEPG RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|166861700|gb|ABZ00108.1| MiaB-like tRNA modifying enzyme YliG [Pseudomonas putida GB-1]
          Length = 443

 Score =  182 bits (463), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 148/474 (31%), Positives = 236/474 (49%), Gaps = 67/474 (14%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  FV S GC   + DS R+      +GYE V + +DAD++V+NTC   + A  +    
Sbjct: 8   PKVGFV-SLGCPKALVDSERILTQLRMEGYEVVPTYEDADVVVVNTCGFIDSAKAESLEV 66

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G         IKE G   V+V GC+   EG  I    P V  V GPQ Y          
Sbjct: 67  IGEA-------IKENGK--VIVTGCMGVEEGS-IRDVHPSVLSVTGPQQY---------- 106

Query: 144 RFGKRVVDTDYSV----EDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
              ++VV+  + V    +D    + +V   G        A+L I EGC+  C+FC++P  
Sbjct: 107 ---EQVVNAVHEVVPPRQDHNPLIDLVPPQGVKLTPRHYAYLKISEGCNHSCSFCIIPSM 163

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTF 247
           RG  +SR + +V+ EA +L+  GV EI ++ Q+ +A           W G+ +   K   
Sbjct: 164 RGKLVSRPVGEVLSEAERLVKAGVKEILVISQDTSAYGVDVKYKTDFWNGRPV---KTRM 220

Query: 248 SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307
            +L  +LS +   VRL Y   +P       + A G    ++PYL +P Q  S ++LKSM 
Sbjct: 221 LELCEALSSLGAWVRLHYVYPYPNVDDVIPLMAAGK---ILPYLDIPFQHASPKVLKSMK 277

Query: 308 RRHTAYEYRQIIDRIRSVR---PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
           R   A+E R +  RI++ R   P++ I S FIVGFPGET++DF+  +D + +    +   
Sbjct: 278 R--PAFEDRTLA-RIKNWREQCPELVIRSTFIVGFPGETEEDFQYLLDWLTEAQLDRVGC 334

Query: 365 FKYSPRLGTPGSNM-LEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
           F+YSP  G P +++ LE+V +++K E   R +  Q+ +   ++      +G+ IEVLI++
Sbjct: 335 FQYSPVEGAPANDLGLEEVPDDIKQERWDRFMAHQQAISTARLQLR---IGKEIEVLIDE 391

Query: 421 HGKEKGKLVGRS----PWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468
             +E+G  VGRS    P +   V    +H    GD ++ R+ D     ++ E +
Sbjct: 392 V-EEQGS-VGRSFFDAPEIDGNVFIDGDHGFKPGDKVRCRVVDADEYDMWAEPI 443


>gi|39935741|ref|NP_948017.1| ribosomal protein S12 methylthiotransferase [Rhodopseudomonas
           palustris CGA009]
 gi|81562562|sp|Q6N6E2|RIMO_RHOPA RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|39649594|emb|CAE28116.1| Protein of unknown function UPF0004:Elongator protein 3/MiaB/NifB
           [Rhodopseudomonas palustris CGA009]
          Length = 441

 Score =  182 bits (463), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 142/466 (30%), Positives = 222/466 (47%), Gaps = 48/466 (10%)

Query: 18  VDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA 77
           + Q   P+  FV S GC   + DS R+     ++GYE     D ADL+++NTC   + A 
Sbjct: 1   MQQATAPKISFV-SLGCPKALVDSERIITRLRAEGYELARKHDGADLVIVNTCGFLDSAK 59

Query: 78  EKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLP 137
           ++  + +G                 V+V GC+  AE E+I    P V  + GPQ Y  + 
Sbjct: 60  QESLAAIGEAMATNGK---------VIVTGCMG-AEPEQIEAAYPGVLSITGPQQYESVL 109

Query: 138 ELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197
           E + RAR        D  V  +  RL+             A+L I EGC+  C+FC++P 
Sbjct: 110 EAVHRARPALHNPHLDL-VPPQGVRLTPRH---------YAYLKISEGCNNRCSFCIIPK 159

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCT 246
            RG  +SR    V+ EA KL+  GV E+ ++ Q+ +A           W+ + +   +  
Sbjct: 160 LRGDLVSRPAGDVLREAEKLVAAGVKELLVISQDTSAYGVDVKYAESPWKDRAV---RAK 216

Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306
           F DL   L E+   VRL Y   +P    D +I    D  VL PYL +P Q  S  +LK M
Sbjct: 217 FLDLASELGELGAWVRLHYVYPYPH--VDEVIGLMADGKVL-PYLDIPFQHASPDVLKLM 273

Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
            R     +    I R R   PD+A+ S FIVGFPGET+ DF   ++ +D+    +  +FK
Sbjct: 274 KRPAAQDKTLDRIKRWREQCPDLALRSTFIVGFPGETERDFEFLLEWLDEAEIDRLGAFK 333

Query: 367 YSPRLGTPGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK 423
           Y P  G P + + +Q+ + VK E   RL+  Q+ +  +++      VG   +V+I++ G 
Sbjct: 334 YEPVAGAPSNALPDQIADEVKQERWNRLMARQQAISARRLKRK---VGTRQQVIIDEIGP 390

Query: 424 --EKGKLVGRSPWLQ-SVVLNSKNH-NIGDIIKVRITDVKISTLYG 465
              KG+    +P +  +V L+S+    +G+I+  +I       L+G
Sbjct: 391 TVAKGRSKADAPDIDGAVYLSSRRPLRVGEIVTAKIDRADAYDLHG 436


>gi|332520869|ref|ZP_08397329.1| MiaB-like tRNA modifying enzyme [Lacinutrix algicola 5H-3-7-4]
 gi|332043399|gb|EGI79595.1| MiaB-like tRNA modifying enzyme [Lacinutrix algicola 5H-3-7-4]
          Length = 440

 Score =  182 bits (463), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 123/427 (28%), Positives = 212/427 (49%), Gaps = 39/427 (9%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N  ++  +   F  +G+ RV   + AD+ V+NTC + E A +       R + +
Sbjct: 9   TLGCKLNFSETSTIARSFKEEGFSRVEFNETADIYVINTCSVTENADK-------RFKTI 61

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE---RARFGK 147
                K   +  V   GC AQ + EE+   +  V++V+G    +++ + L    +  FG+
Sbjct: 62  VKQAQKANPEAFVAAVGCYAQLKPEELADVNG-VDLVLGATEKFKITDYLNDLTKNDFGE 120

Query: 148 ----RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
                + D D+ V           G Y+      AFL +Q+GCD  CT+C +P  RGI  
Sbjct: 121 VHSCDINDADFYV-----------GSYSIGDRTRAFLKVQDGCDYKCTYCTIPLARGISR 169

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK---CTFSDLLYSLSEIKGL 260
           S  L  V++ A+++   G+ EI L G N+  + GKG  G K    TF +L+ +L +++G+
Sbjct: 170 SDKLDNVLNNAKEISAKGIKEIVLTGVNIGDY-GKGEFGNKKHEHTFLELVEALDKVEGI 228

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            RLR ++  P  + +  I+        +P+ H+P+QSG + ILK M RR+    Y   + 
Sbjct: 229 ERLRISSIEPNLLKNETIEVVSKSRAFVPHFHIPLQSGHNDILKLMKRRYMRELYVDRVA 288

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           +I+ V P   I  D IVGFPGETD+ F  T + ++ +  +    F YS R  T  ++   
Sbjct: 289 KIKEVMPHACIGVDVIVGFPGETDEHFLETYNFLNTLDISYLHVFTYSERDNTEAASFKN 348

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG--------RS 432
            V +N++++R   L+    +++ ++ +  +G    VL E   KE G + G        ++
Sbjct: 349 VVPKNIRSKRSKMLRGLSAKKRRAYYEKQIGTSRSVLFEGENKE-GYIHGFTENYVKVKA 407

Query: 433 PWLQSVV 439
           PW   +V
Sbjct: 408 PWNPELV 414


>gi|56478113|ref|YP_159702.1| ribosomal protein S12 methylthiotransferase [Aromatoleum aromaticum
           EbN1]
 gi|81357013|sp|Q5P1L3|RIMO_AROAE RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|56314156|emb|CAI08801.1| radical SAM protein similar to MiaB [Aromatoleum aromaticum EbN1]
          Length = 443

 Score =  182 bits (463), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 144/463 (31%), Positives = 218/463 (47%), Gaps = 52/463 (11%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           VP+  FV S GC     DS  +     ++GY+   S DDADL+V+NTC   + A E+   
Sbjct: 9   VPRVGFV-SLGCPKATVDSEHILTRLRAEGYDLSGSYDDADLVVVNTCGFIDAAVEESLD 67

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +G         + E G   V+V GC+  A+ + IL   P V  V GP     +      
Sbjct: 68  AIGEA-------LAENGK--VIVTGCLG-AKDDVILAAHPQVLAVTGPHATDAV------ 111

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
               K V        D F  L I   G        A+L I EGC+  C+FC++P  RG  
Sbjct: 112 ---VKAVHQHLPKPHDPFTDL-IPPQGIRLTPAHYAYLKISEGCNHRCSFCIIPSMRGDL 167

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLL 251
           +SR +  V+ EA  L+D+GV E+ ++ Q+ +A           W G+ L   K    DL 
Sbjct: 168 VSRPVHDVMREAESLVDSGVKELLVISQDTSAYGVDMKYRTGFWNGRPL---KTRLIDLA 224

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
            +L E+   VR+ Y   +P       + A G +   +PYL +P Q  S RILK+M R   
Sbjct: 225 KALGELGVWVRMHYVYPYPSVDELIPLMAEGKI---LPYLDVPFQHASPRILKAMKRPGN 281

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
                + I + RS+ PD+ I S FI GFPGETD+DF   +  +++    +  +F YSP  
Sbjct: 282 VENVLERIRKWRSICPDLTIRSTFITGFPGETDEDFEQLLRFLEEAQLDRVGAFAYSPVE 341

Query: 372 GTPGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL 428
           G   + + + V + V+ E   RL+  Q+ +  Q++   +  +G+ I VL+E+   E    
Sbjct: 342 GAAANLLADPVPDEVREERRMRLMDFQEDISTQRL---ERWIGRDITVLVEEVDDEGA-- 396

Query: 429 VGRS----PWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYG 465
           V RS    P +  +V+      +  G+  KVR+TD  +  LY 
Sbjct: 397 VARSGSDAPEVDGLVIIPDGDGLVPGEFAKVRVTDCDVHDLYA 439


>gi|152978089|ref|YP_001343718.1| MiaB-like tRNA modifying enzyme YliG [Actinobacillus succinogenes
           130Z]
 gi|238065279|sp|A6VLD6|RIMO_ACTSZ RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|150839812|gb|ABR73783.1| MiaB-like tRNA modifying enzyme YliG [Actinobacillus succinogenes
           130Z]
          Length = 444

 Score =  182 bits (463), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 137/465 (29%), Positives = 220/465 (47%), Gaps = 49/465 (10%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           VP   FV S GC  N+ DS R+     S GY  + + ++ADL+++NTC   + A ++   
Sbjct: 5   VPNIGFV-SLGCPKNLVDSERILTELRSDGYNIIPTYENADLVIVNTCGFIDSAVQESLE 63

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +G                 V+V GC+   E + I    P V  + GP +Y  + E    
Sbjct: 64  AIGEALEANGK---------VLVTGCLGAKE-DRIREVHPKVLEITGPHSYEAVME---- 109

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
               K V    Y+       +++V   G        A+L I EGCD  CTFC++P  RG 
Sbjct: 110 -HVHKYVPKPAYN-----PYINVVPSQGVKLTPKHYAYLKISEGCDHKCTFCIIPSLRGD 163

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNA---------------WRGKGLDGEKCT 246
             SR ++Q++DEA++L D+GV E+ ++ Q+ +A               W G  +     T
Sbjct: 164 LDSRPITQILDEAKRLADSGVKELLVVSQDTSAYSLDQSKETQNKTVFWNGIPIKNNLIT 223

Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306
              +L +L      VRL Y   +P       + A G +   +PYL +P+Q  S +ILK+M
Sbjct: 224 LCQMLGTLGV---WVRLHYVYPYPHVDDLIPLMAAGKI---LPYLDIPLQHASPKILKAM 277

Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
            R  +     + I   R + P++ + S FIVGFPGET++DF+  +D + +    +   FK
Sbjct: 278 KRPGSVERVLERIKNWREICPELTLRSTFIVGFPGETEEDFQLLLDFLKEAQLDRVGCFK 337

Query: 367 YSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK- 425
           +SP  G   ++M +QV E VK ER     +  +E   +     +G+  +V++++  +E  
Sbjct: 338 FSPVDGATATDMPDQVPEEVKEERFQRFMQLQQEISAARLQQKIGKTWKVIVDEIDEEGI 397

Query: 426 -GKLVGRSPWLQSVV----LNSKNHNIGDIIKVRITDVKISTLYG 465
            G+ +  +P +  VV    +      IGDII VRIT      L+G
Sbjct: 398 IGRSMADAPEIDGVVYVDNVGQSAVRIGDIIDVRITRADEYDLWG 442


>gi|297621456|ref|YP_003709593.1| MiaB-like tRNA modifying enzyme [Waddlia chondrophila WSU 86-1044]
 gi|297376758|gb|ADI38588.1| MiaB-like tRNA modifying enzyme [Waddlia chondrophila WSU 86-1044]
          Length = 433

 Score =  182 bits (462), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 129/448 (28%), Positives = 226/448 (50%), Gaps = 35/448 (7%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           Q+F V + GC+ N Y+S    D     GYE     +DADL ++NTC + E A  +     
Sbjct: 13  QKFRVVTLGCRTNQYESQAFRDQLLQMGYEPAEGKEDADLCIVNTCTVTESADSRSRY-- 70

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             IR L     K+     ++V GC  + + E+I     +  +V           LLE+  
Sbjct: 71  -EIRQLA----KKNPHAKIIVTGCSVERQPEKIEAIEGVAQLVKNADKEI----LLEKVF 121

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G+ +   ++S+              N      AF+ +Q+GC+ FCT+C++PY RG   S
Sbjct: 122 PGEDL--PEFSIR-------------NFDAHTRAFVKVQDGCNSFCTYCIIPYVRGRSRS 166

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R++ QV++E + LI NG  EI L G N+  + G G D E    ++L+  +  + GL RLR
Sbjct: 167 RTMGQVLEEVKDLIANGYKEIVLTGINIGDFDG-GAD-EPRRLAELVKEVDAVPGLERLR 224

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
            ++  P ++ D +++   +       +H+ +QSGS+ +LK MNR++T   +   + R+RS
Sbjct: 225 VSSIDPDEVDDEMLETIINGKKTCRSMHIVLQSGSNVVLKRMNRKYTRQMFMDTVSRLRS 284

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
              D   ++D IVGFPGET+ D + T++++ ++ +A+   F YSPR  T  +   ++V  
Sbjct: 285 ACSDFTFTTDVIVGFPGETERDHQETLEVLQEVQFAKVHMFPYSPRPRTRAALYSDRVSA 344

Query: 385 NVKAERLLCLQKKLR-EQQVSFN--DACVGQIIEVLIEKHGKEKGKLV-GRSPWLQSVVL 440
           +V   R    Q+ LR  ++++FN   + VG+ + VL E +     +++ G +     V++
Sbjct: 345 DVIQRR---KQEVLRLSEEIAFNLRSSYVGRRMSVLTENYDDLHTEMISGHTDNFLPVMV 401

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                    +I+V   +   + L G++V
Sbjct: 402 PKAALRPNTMIEVECRENTAAALIGKVV 429


>gi|306841786|ref|ZP_07474472.1| MiaB-like tRNA modifying enzyme YliG [Brucella sp. BO2]
 gi|306845898|ref|ZP_07478466.1| MiaB-like tRNA modifying enzyme YliG [Brucella sp. BO1]
 gi|306273790|gb|EFM55628.1| MiaB-like tRNA modifying enzyme YliG [Brucella sp. BO1]
 gi|306288191|gb|EFM59578.1| MiaB-like tRNA modifying enzyme YliG [Brucella sp. BO2]
          Length = 437

 Score =  182 bits (462), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 152/464 (32%), Positives = 225/464 (48%), Gaps = 47/464 (10%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
            P+  FV S GC   + DS R+     S+GYE     D ADL+++NTC   + A ++   
Sbjct: 3   APRVSFV-SLGCPKALVDSERIITGLRSEGYEISRKHDGADLVIVNTCGFLDSARDESLE 61

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +G   N       E G   V+V GC+  AE + I  R P V  + GPQ Y    E +  
Sbjct: 62  AIGLALN-------ENGK--VIVTGCLG-AEPDVIRERHPNVLAITGPQAY----ESVMN 107

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           A     V +      D F  L    G     R   A+L I EGC   C+FC++P  RG  
Sbjct: 108 A-----VHEVAPPAHDPFVDLVPPQGVKLTPRHY-AYLKISEGCSNRCSFCIIPALRGDL 161

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE-----------KCTFSDLL 251
           +SR +++V+ EA KL+  GV EI ++ Q+ +A+   GLD +           +  F DL 
Sbjct: 162 VSRPINEVLREAEKLVQAGVKEILVISQDTSAY---GLDIKYQEAMWQDRTVRTKFLDLS 218

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
             L E+   VR+ Y   +P       + A G +   +PYL +P Q  S  +LK+M R   
Sbjct: 219 RELGEMGVWVRMHYVYPYPHVDEVIPLMAEGKI---LPYLDIPFQHASPAVLKNMRRPAH 275

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
             +  + I   R   PD+A+ S FIVG+PGETD+DF+  +D +D+    +A  FKY    
Sbjct: 276 QEKTSRRIQAWRETCPDLAVRSTFIVGYPGETDEDFQMLLDWLDEAKIERAGCFKYEAVK 335

Query: 372 GTPGSNM-LEQVDENVKAERLLCLQKKLREQQVSFN--DACVGQIIEVLIEKHGKEKGKL 428
           G   +++ LEQV E VK  R      K  +QQ+S N     VG+ + V+I++     GK 
Sbjct: 336 GAKANDLGLEQVPEEVKEARWHRFMAK--QQQISTNLLKKKVGKRLPVIIDEANGTIGKG 393

Query: 429 VGR--SPWLQ-SVVLNSKNH-NIGDIIKVRITDVKISTLYGELV 468
             R  +P +  SV ++S+    +GDI+ V+I       L+G  V
Sbjct: 394 RTRYDAPEIDGSVHISSRRPLRVGDIVTVKIEASDAYDLHGTAV 437


>gi|268591324|ref|ZP_06125545.1| RNA modification enzyme, MiaB-family [Providencia rettgeri DSM
           1131]
 gi|291313300|gb|EFE53753.1| RNA modification enzyme, MiaB-family [Providencia rettgeri DSM
           1131]
          Length = 444

 Score =  182 bits (462), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 141/468 (30%), Positives = 234/468 (50%), Gaps = 55/468 (11%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           VP+  FV S GC  N+ DS R+     + GY+ V S D+ADL+++NTC   + A ++   
Sbjct: 8   VPKIGFV-SLGCPKNLVDSERILTELRTDGYQVVPSYDNADLVIVNTCGFIDSAVQESLE 66

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +G   N       E G   V+V GC+   E + I    P V  + GP +Y         
Sbjct: 67  AIGEALN-------ENGK--VIVTGCLGAKENQ-IREVHPKVLEITGPHSY--------- 107

Query: 143 ARFGKRVVDTDYSVEDKFER---LSIV-DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
               ++V++  +    K E    LS+V + G        A+L I EGC+  CTFC++P  
Sbjct: 108 ----EQVLNHVHHYVPKPEHDPFLSLVPEQGVKLTPKHYAYLKISEGCNHRCTFCIIPSM 163

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTF 247
           RG   SR +  V++EA++L+ +GV E+ ++ Q+ +A           W G+ +   K + 
Sbjct: 164 RGDLDSRPIGDVLNEAKRLVASGVKELLVISQDTSAYGVDVKNKTGFWDGQPV---KTSM 220

Query: 248 SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307
             L   L+ +   VRL Y   +P       + A G +   +PYL +P+Q  S +ILK M 
Sbjct: 221 VGLCEQLASMGVWVRLHYVYPYPHVDDVIPLMAEGKI---LPYLDIPLQHASPKILKLMK 277

Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           R        + I R R + P++ + S FIVGFPGET++DF+  +D + +    +   FKY
Sbjct: 278 RPGAVERTLERIKRWREICPELTLRSTFIVGFPGETEEDFQMLLDFLLEAKLDRVGCFKY 337

Query: 368 SPRLGTPGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE 424
           SP  G   + + +QV E +K +   R + LQ+++  Q++      +G+ I V+I++   E
Sbjct: 338 SPVEGAKANELADQVPEEIKEDRYHRFMQLQQQISTQRLQDK---IGKEILVIIDEVDDE 394

Query: 425 K--GKLVGRSPWLQSVV-LNSKNH-NIGDIIKVRITDVKISTLYGELV 468
              G+ +  +P +  +V LN +   ++GDI+KV +       L+G +V
Sbjct: 395 GAIGRSMADAPEIDGMVYLNGEFEVSVGDIVKVLVEHADEYDLWGNIV 442


>gi|58582895|ref|YP_201911.1| ribosomal protein S12 methylthiotransferase [Xanthomonas oryzae pv.
           oryzae KACC10331]
 gi|84624755|ref|YP_452127.1| hypothetical protein XOO_3098 [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|75434617|sp|Q5GXP5|RIMO_XANOR RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|123739066|sp|Q2P0S4|RIMO_XANOM RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|58427489|gb|AAW76526.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84368695|dbj|BAE69853.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae MAFF
           311018]
          Length = 466

 Score =  182 bits (462), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 142/461 (30%), Positives = 216/461 (46%), Gaps = 44/461 (9%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           VP+  FV S GC   + DS R+      +GY+ V S D AD++V+NTC   + A  +   
Sbjct: 14  VPKVGFV-SLGCPKALVDSERILTQLRVEGYDIVPSYDAADVVVVNTCGFIDSAVTESLD 72

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +G   N             V+V GC+ +   E+I    P V  V GPQ Y  + E +  
Sbjct: 73  AIGEAMNANGK---------VIVTGCLGK-RPEQIREAYPQVLAVSGPQDYQSVMEAVHA 122

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           A   +          D F  L + D G        A+L I EGC+  C+FC++P  RG  
Sbjct: 123 ALPPRH---------DPFVDL-VPDYGIKLTPRHYAYLKISEGCNHRCSFCIIPSMRGDL 172

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS--------- 253
           +SR + +V+ EA +L+  GV E+ ++ Q+ +A+ G  L   +  + D +Y          
Sbjct: 173 VSRPVDEVLCEAERLVRGGVKELLVVSQDTSAY-GVDLKYAERPWRDRMYQTRMKALCEG 231

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
           LSE+    RL Y   +P       + A G L   +PYL +P Q  S RILK M R     
Sbjct: 232 LSELGVWTRLHYVYPYPHVDDVLPLMAEGKL---LPYLDIPFQHASPRILKLMKRPGAVE 288

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
           +  Q + R +++ P+I + S FIVGFPGETD +F + +D +D+    +  +F YSP  G 
Sbjct: 289 KTLQRVQRWKAMCPEITVRSTFIVGFPGETDAEFESLLDFLDQAQLDRVGAFAYSPVHGA 348

Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS- 432
             + + + V E VK ERL     K  E      +A +G + + L++    E    V RS 
Sbjct: 349 SANALPDPVPEEVKQERLARFMAKQAEISALRLEAKIGSVQQCLVDL--IEDDIAVARSR 406

Query: 433 ---PWLQSVVLNSKNH----NIGDIIKVRITDVKISTLYGE 466
              P +  +V           +GD++ V ITD     L+G+
Sbjct: 407 ADAPEIDGLVHIQNGGELGLKVGDLVDVEITDSDEHDLFGD 447


>gi|317154682|ref|YP_004122730.1| MiaB-like tRNA modifying enzyme YliG [Desulfovibrio aespoeensis
           Aspo-2]
 gi|316944933|gb|ADU63984.1| MiaB-like tRNA modifying enzyme YliG [Desulfovibrio aespoeensis
           Aspo-2]
          Length = 443

 Score =  182 bits (462), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 130/420 (30%), Positives = 206/420 (49%), Gaps = 33/420 (7%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC-HIREKAAEKVYSFL 84
           + F  S GC  N+ D+ R+            +++  ADL ++NTC  I+    E V + L
Sbjct: 10  KVFTVSLGCPKNLVDTERLLGAL-GPAMLPADTVAQADLALINTCGFIQPAVEESVAAIL 68

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             +R+   +R   G   LV VAGC+    G+++    P V++ +     +  P ++ +A 
Sbjct: 69  DAVRDADETRESTGRRPLVAVAGCLVSRYGQDLREELPEVDLWLSTDQLHLWPVMIAQAI 128

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
              R       + +   RLS             A+L I EGC   C FC +P  RG   S
Sbjct: 129 THAR------PIPNAPRRLS--------TGPAYAYLKISEGCSHNCHFCTIPSIRGPHRS 174

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R +  ++DEAR L  + V EI ++GQ+  ++ G  L G+  T   L+  L+++ GL  LR
Sbjct: 175 RPVEALLDEARTLAAS-VPEIIIVGQDSTSY-GSDLGGDN-TIKHLVSGLADLPGLAWLR 231

Query: 265 YTTSHPRDMSDCLI---KAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
               +P  ++D L+   K+ GD   L+PY  +P+Q     +L SM R   A   R++IDR
Sbjct: 232 LMYLYPAGLTDDLLGFLKSIGD--PLLPYFDIPLQHAHPDVLASMGRPF-ARNPRKVIDR 288

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R+   D A+ + FIVG+PGETD+ F   M  V++  +     F Y P  GTP + + + 
Sbjct: 289 VRAHFSDAALRTTFIVGYPGETDEHFDHLMRFVEETRFHHLGVFPYWPEDGTPAAALPDP 348

Query: 382 VDENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRSPWLQS 437
           VD+  K +R   L+ LQ  +  +     ++ VGQ + VLIE    E  G   GR+ W Q+
Sbjct: 349 VDDQTKLDRRDALMALQADISRE---IMESHVGQTLPVLIEAPSPEWPGLFTGRT-WFQA 404


>gi|253583199|ref|ZP_04860397.1| Fe-S oxidoreductase [Fusobacterium varium ATCC 27725]
 gi|251833771|gb|EES62334.1| Fe-S oxidoreductase [Fusobacterium varium ATCC 27725]
          Length = 432

 Score =  182 bits (462), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 131/452 (28%), Positives = 229/452 (50%), Gaps = 34/452 (7%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +R    + GC++N Y++  +++    +GY      + A++ ++N+C +   A  K  + L
Sbjct: 5   KRVAFYTLGCKVNQYETESIKNQLLKKGYTETAFEEKAEIYIVNSCTVTSVADRKTRNML 64

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R +     +I   G  +V+V GC AQ   +E+L    I + V+G      +   +E   
Sbjct: 65  RRAK-----KINPRG--IVIVTGCYAQTNSKELLEMEEI-DYVIGNSDKNAIVNFIE--- 113

Query: 145 FGKRVVDTDYSVEDKFERLSI-VDGGYNRKRGVT------AFLTIQEGCDKFCTFCVVPY 197
                 D +    +K +  +I +D  Y      T      A++ IQ+GC+ FC++C +P+
Sbjct: 114 ------DIENRTMEKVKNHNIFLDSEYTEYEFATLREMSRAYVKIQDGCNNFCSYCKIPF 167

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257
            RG   SR    ++ E  KL++ G  EI L+G N+ A+ G+ LD E   F  LL S+ EI
Sbjct: 168 ARGKSRSRKKENIIKEIEKLVEEGFKEIILIGINLGAY-GEDLD-EGENFESLLKSILEI 225

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
             L R+R  + +P  +SD  I    D   LMP+LH+ +QS  D +LK M R++ +    +
Sbjct: 226 NKLQRVRIGSVYPDKISDEFINMF-DNKKLMPHLHISLQSCDDEVLKRMRRKYGSSLIEE 284

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
            + +++    ++  ++D IVGFPGET++ F+ + +L++KIG++    F+YS R  T  S+
Sbjct: 285 RLLKLKKKVKNMEYTADVIVGFPGETEEMFQNSYNLIEKIGFSGIHIFQYSDRENTIASS 344

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQS 437
             +++D  VK ER   L+    E         +G+ + VL+E+  K  G L G S     
Sbjct: 345 FTDKIDAKVKKERADRLEVLKSEMAKKERKKYIGKHLSVLLEE--KINGYLYGYSENYLR 402

Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
           V +      +  II     D+KI++L  E+++
Sbjct: 403 VKIKDNGIEVNSII-----DIKINSLEKEMLI 429


>gi|325681387|ref|ZP_08160913.1| ribosomal protein S12 methylthiotransferase RimO [Ruminococcus
           albus 8]
 gi|324106877|gb|EGC01167.1| ribosomal protein S12 methylthiotransferase RimO [Ruminococcus
           albus 8]
          Length = 443

 Score =  182 bits (462), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 131/447 (29%), Positives = 215/447 (48%), Gaps = 22/447 (4%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N  D+  M      +GY+ V     AD++V+NTC   E A ++    +     L
Sbjct: 9   SLGCPKNQVDAEHMLFDLKKEGYQIVADAALADVVVVNTCGFIESAKQEAIDTILEFCTL 68

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
           K    +EG    V+  GC+A+   +E+ +  P ++ VVG  +  +LPE++     G+  +
Sbjct: 69  K----QEGRIKAVIATGCLAERYRDEMKKEIPELDAVVGLGSNSKLPEIIRDIYRGEEQI 124

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
               S  D    L +  G         A++ I EGC   CT+C +P  RG   SR +  +
Sbjct: 125 CAYGSKTD----LPMEGGRIISTEPFYAYIKIAEGCSNNCTYCAIPAIRGKFRSRKMEDI 180

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270
           ++EAR L +NGV E+ ++ Q+   + G+ + G K    +LL  L +I G   +R   S+P
Sbjct: 181 LEEARWLAENGVTELVVIAQDTTRY-GEDIYG-KSKLPELLRELCKIDGFKWIRTLYSYP 238

Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330
             +S+  I      + L+ Y+ +P+Q  +  +L+SMNR        ++I ++R+  PDI 
Sbjct: 239 ERISEEFIDVLASEEKLVKYIDMPIQHCNGDVLRSMNRPGNEAFLLELISKLRARIPDIV 298

Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER 390
           + +  I GFPGET+  F    + V  +G+ +   F YSP  GT   +M  QVDE  K  R
Sbjct: 299 LRTTLIAGFPGETEAQFEELCEFVKNVGFERLGCFAYSPEEGTKAFSMEGQVDEQTKERR 358

Query: 391 LLCLQKKLREQQV---SFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVVL--N 441
              +   +REQ +    +N A +G+ IEV+ E   +      GR    +P +   +   +
Sbjct: 359 ADII---MREQMLVADRYNQAQLGKTIEVVCEGFDRYAECYFGRGTADAPEIDGKIFFTS 415

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
            K   +G  +KV + D     L G +V
Sbjct: 416 EKKVQVGQYVKVELFDTMDYDLLGTVV 442


>gi|294785210|ref|ZP_06750498.1| Fe-S oxidoreductase [Fusobacterium sp. 3_1_27]
 gi|294486924|gb|EFG34286.1| Fe-S oxidoreductase [Fusobacterium sp. 3_1_27]
          Length = 435

 Score =  182 bits (462), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 131/449 (29%), Positives = 225/449 (50%), Gaps = 40/449 (8%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  +++    +GYE V   D +D+ ++N+C +   A  K  + L R + +
Sbjct: 11  TLGCKVNQYETESIKNQLIKRGYEEVPFEDKSDIYIINSCTVTSIADRKTRNMLRRAKKI 70

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILR------------RSPIVNVVVGPQTYYRLPE 138
                    D  V+V GC AQ    EIL             +S IVN V   +       
Sbjct: 71  -------NPDAKVIVTGCYAQTNSREILEIEDVDFVIDNKNKSNIVNFVGAIEDIS---- 119

Query: 139 LLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
             ER + G    + +Y  E +F  L         +    A++ IQ+GC+ FC++C +P+ 
Sbjct: 120 -FEREKNGNIFQEKEYQ-EYEFATL---------REMTRAYVKIQDGCNHFCSYCKIPFA 168

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258
           RG   SR    ++ E  KL+++G  E+ L+G +++A+ GK    EK  F  LL  + +IK
Sbjct: 169 RGKSRSRKKENILKEIEKLVEDGFKEVILIGIDLSAY-GKDF-KEKDNFESLLEDILKIK 226

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
            L R+R  + +P  ++D  I+   + + LMP+LH+ +QS  D +LK+M R + +   R+ 
Sbjct: 227 DLKRVRIGSVYPDKITDRFIELFKNKN-LMPHLHISLQSCDDTVLKNMRRNYGSSLIRES 285

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           + +++S   ++  ++D IVGFP E +  F+ T D++ +I ++    F+YS R GT  SNM
Sbjct: 286 LLKLKSKVKNMEFTADVIVGFPKEDETMFQNTYDVIKEIEFSGLHIFQYSDREGTIASNM 345

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSV 438
             +VD   K +R   L    +E  ++     + + +EVL+E+   + G+  G S     V
Sbjct: 346 DGKVDAKTKKQRADRLDNLKQEMILNSRKKYLEKSLEVLVEEE--KDGEYFGYSQNYLRV 403

Query: 439 VLNSKNHN-IGDIIKVRITDVKISTLYGE 466
              S   N +  +I V+I  VK   L  E
Sbjct: 404 KFKSNEKNLVNKLINVKIKCVKNDILIAE 432


>gi|255532825|ref|YP_003093197.1| MiaB-like tRNA modifying enzyme [Pedobacter heparinus DSM 2366]
 gi|255345809|gb|ACU05135.1| MiaB-like tRNA modifying enzyme [Pedobacter heparinus DSM 2366]
          Length = 439

 Score =  182 bits (462), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 116/393 (29%), Positives = 201/393 (51%), Gaps = 12/393 (3%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N  ++  +  +F   GY  V+  D AD+ V+NTC + E A +K        R +
Sbjct: 8   TLGCKLNFSETSTIGRLFTDAGYAVVDFTDGADVYVINTCSVTEHADKKC-------RKV 60

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               +K      V + GC AQ +  EI      V++V+G    +R+ E +       + V
Sbjct: 61  VKEALKYAPHAYVTIVGCYAQLKPAEIAEIEG-VDMVLGAAEKFRIVEFISDLTKQPKAV 119

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
               ++E             +R R    FL +Q+GCD  CT+C +P  RG   S ++  V
Sbjct: 120 VHQQNIEKVNHNFIAAYSIGDRTR---TFLKVQDGCDYPCTYCTIPLARGGSRSDTIENV 176

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270
           ++ AR++ ++GV EI L G N+  +  +  + E   F DL+ +L E++G+ R+R ++  P
Sbjct: 177 INRARQIAESGVKEIVLTGVNLGDFGIRNGERED-KFFDLVKALDEVEGIERIRISSIEP 235

Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330
             +S+ +++        +P+ H+P+QSGS++IL  M RR+    Y + + +I++V P+  
Sbjct: 236 NLLSNEIVEFVATSKRFVPHFHIPLQSGSNKILGLMRRRYQRELYTERVAKIKAVMPNCC 295

Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER 390
           I  D IVGFPGET +DF  T   ++++  +    F YS R  T  + M  +V  + +AER
Sbjct: 296 IGVDVIVGFPGETQEDFLDTYQFLNELDISYLHVFTYSEREQTAAAEMKGRVAGSTRAER 355

Query: 391 LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK 423
              L     +++ +F  + +G + EVL E   K
Sbjct: 356 SKMLHILSDKKRRAFYQSQIGTVGEVLFEDDQK 388


>gi|296122454|ref|YP_003630232.1| RNA modification enzyme, MiaB family [Planctomyces limnophilus DSM
           3776]
 gi|296014794|gb|ADG68033.1| RNA modification enzyme, MiaB family [Planctomyces limnophilus DSM
           3776]
          Length = 440

 Score =  182 bits (462), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 127/441 (28%), Positives = 213/441 (48%), Gaps = 32/441 (7%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  +++     GY  VN  + ADL  +NTC +             R R +
Sbjct: 20  TLGCKVNQYETQLVKEALARHGYREVNEHEIADLCFVNTCTVTANGE-------SRSRQV 72

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
                K       +V GC       E  R+ P V+ VV  +    LP++L+R  +G  VV
Sbjct: 73  VRQLAKSNPGTRTIVVGC-GVTRSPESFRQLPSVHEVVTDRR--ELPDVLQR--YG--VV 125

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
           +    +E +FE          RKR   A++ +Q+GC   CT+C++P  R   ISR    +
Sbjct: 126 EFPRGIE-RFE---------GRKR---AYVKVQDGCALRCTYCIIPQVRPHLISREPEDI 172

Query: 211 VDEARKLIDNGVCEITLLGQNVNAW----RGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
             E R+LI NG  EI L G ++  +    R +     +     L+  L +I G  R+R +
Sbjct: 173 EREVRQLIANGYQEIILTGVHIGHYGVDLRRRTAGAPRIRLWHLIDRLDKIAGHWRMRLS 232

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
           +    +M+D  I +    + L P  H  +QSGS+ +L  M RR+T  ++  I+D+++   
Sbjct: 233 SIEAAEMTDEFISSVSSAEHLCPQFHPALQSGSNAVLSRMRRRYTKEKFIDIVDQLKEAL 292

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           P    S+D IVGFPGETD++F  T+D+   +G+ +  +F +S R GTP +   ++V  +V
Sbjct: 293 PHPGFSTDVIVGFPGETDEEFAETLDVCQNVGFTKIHAFSFSAREGTPAATFPDRVHGHV 352

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSVVLNSKNH 445
              R+  L+    +   SF +   G  IEV++E  H      +VG       V+L     
Sbjct: 353 INARIKALEDLELQLVQSFGENLKGSRIEVMVESIHPDHPDLVVGTDERYCPVILAGNAS 412

Query: 446 NIGDIIKVRITDVKISTLYGE 466
           ++G + +  +  V+   L+G+
Sbjct: 413 DLGQLRETLVIGVRQGMLWGQ 433


>gi|225574860|ref|ZP_03783470.1| hypothetical protein RUMHYD_02938 [Blautia hydrogenotrophica DSM
           10507]
 gi|225037934|gb|EEG48180.1| hypothetical protein RUMHYD_02938 [Blautia hydrogenotrophica DSM
           10507]
          Length = 447

 Score =  182 bits (462), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 127/431 (29%), Positives = 232/431 (53%), Gaps = 28/431 (6%)

Query: 33  GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92
           GC++N Y+   M+ +    GY+ V     AD+ ++NTC +   A  K    L R + +  
Sbjct: 17  GCKVNAYELEAMQQILEKAGYQVVPFAPGADVYIINTCTVTNIADRKSRQMLHRAKKM-- 74

Query: 93  SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE---RARFGKRV 149
                  + +VV AGC  QA+   + + S I +++VG      +  LLE   ++R GK+ 
Sbjct: 75  -----NPEAVVVAAGCYVQADLPRLEKDSAI-DLIVGNNKKKDIVSLLEAYDKSR-GKQE 127

Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209
              + +   ++E L I     +    V A++ +Q+GC++FCT+C++PYTRG   SRS  +
Sbjct: 128 CVININQTKEYEALEIETTAEH----VRAYIKVQDGCNQFCTYCIIPYTRGRVRSRSKDE 183

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSH 269
           V  E  +L + G  E+ L G +++++ G     +  +  DL+ ++ ++ G+ R+R ++  
Sbjct: 184 VQKEVVRLANRGYHEVVLTGIHLSSY-GVDFKEQPDSLLDLIRAIHQVDGITRIRLSSLE 242

Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329
           P  +++  +K   +L  + P+ HL +QSG    L+ MNRR+TA EYR+  + +R    + 
Sbjct: 243 PGVITEEFVKGLAELWKVCPHFHLSLQSGCQTTLERMNRRYTAQEYREKCELLRRYYENP 302

Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAE 389
           A+++D IVGFP ET+++F  + + V  I + +   FK+S R GT    M  QV E  KA 
Sbjct: 303 ALTTDVIVGFPQETEEEFEESYEFVRDIRFYETHIFKFSRRKGTKADKMDGQVPEQEKAR 362

Query: 390 RLLCL----QKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK--LVGRS-PWLQSVVLNS 442
           R  C+    +++  E + SF    +G+ +EVL+E+     G+  L+G S  ++++ V + 
Sbjct: 363 RSGCMIALGERRAEEYEKSF----LGKTLEVLLEEEISVDGQLYLIGHSREYIKAAVPSD 418

Query: 443 KNHNIGDIIKV 453
            +  + D +++
Sbjct: 419 GSWKVNDCVQM 429


>gi|53729279|ref|ZP_00133809.2| COG0621: 2-methylthioadenine synthetase [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|126209100|ref|YP_001054325.1| hypothetical protein APL_1636 [Actinobacillus pleuropneumoniae L20]
 gi|307250930|ref|ZP_07532857.1| Ribosomal protein S12 methylthiotransferase rimO [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|238065276|sp|A3N2T4|RIMO_ACTP2 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|126097892|gb|ABN74720.1| hypothetical protein APL_1636 [Actinobacillus pleuropneumoniae
           serovar 5b str. L20]
 gi|306857062|gb|EFM89191.1| Ribosomal protein S12 methylthiotransferase rimO [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
          Length = 443

 Score =  182 bits (462), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 132/459 (28%), Positives = 224/459 (48%), Gaps = 52/459 (11%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ DS R+     + GY  + S ++ADL+++NTC   + A ++    +G     
Sbjct: 11  SLGCPKNLVDSERILTELRTDGYNIIPSYENADLVIVNTCGFIDSAVQESLEAIGE---- 66

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               ++E G   V+V GC+   E + I    P V  + GP +Y  +  +    ++  R  
Sbjct: 67  ---ALEENGK--VIVTGCLGAKENQ-IREVHPKVLEITGPHSYEAV--MKHVHKYVPRPE 118

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
              Y+     + + +    Y       A+L I EGCD  CTFC++P  RG   SR + QV
Sbjct: 119 RNIYTSLVPAQGVKLTPKHY-------AYLKISEGCDHRCTFCIIPSMRGDLDSRPIVQV 171

Query: 211 VDEARKLIDNGVCEITLLGQNVNA---------------WRGKGLDGEKCTFSDLLYSLS 255
           +DEA++L D+GV E+ ++ Q+ +A               W G  +     T  + L SL 
Sbjct: 172 LDEAKRLADSGVKELLIVSQDTSAYALDQSKENQNKTVFWNGAPIKNNLITLCEQLGSLG 231

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
                VRL Y   +P       + A G +   +PYL +P+Q  S ++LK+M R       
Sbjct: 232 ---IWVRLHYVYPYPHVDDLIPLMAQGKI---LPYLDIPLQHASPKVLKAMKRPGAIDRT 285

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
            + I + R + P + + S FIVGFPGET++DF+  +D +++    +   FK+SP  G   
Sbjct: 286 LERIKKWREICPKLTLRSTFIVGFPGETEEDFQMLLDFLEEAQLDRVGCFKFSPVEGAVA 345

Query: 376 SNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVG 430
           + M +QV E+VK E   R + +Q+++   ++      VG+ + V+I++  +E   G+ + 
Sbjct: 346 TEMADQVPEDVKEERFHRFMQVQQRISAARLQQK---VGKTLAVIIDEIDEEGIIGRSMA 402

Query: 431 RSPWLQSVV----LNSKNHNIGDIIKVRITDVKISTLYG 465
            +P +  VV    L+ +   +G +I V IT+     L+G
Sbjct: 403 DAPEIDGVVYVDNLSEQEVKVGQVISVSITNADEYDLWG 441


>gi|46447397|ref|YP_008762.1| putative 2-methylthioadenine synthetase [Candidatus Protochlamydia
           amoebophila UWE25]
 gi|46401038|emb|CAF24487.1| putative 2-methylthioadenine synthetase [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 434

 Score =  182 bits (462), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 114/358 (31%), Positives = 187/358 (52%), Gaps = 27/358 (7%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +F + + GC+ N Y+S   ++     GY+     + AD+ ++NTC + E A     S   
Sbjct: 7   KFKIITLGCRTNQYESQAYQNQLLRMGYQEAKEGEKADICIVNTCTVTESADS---SSRH 63

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            IR L  +R  +G  LLV  AGC A+ + E I +   + +V+   +    L  L  +   
Sbjct: 64  AIRQL--ARENQGTQLLV--AGCFAERQPEVIQKIDGVTHVIPNREKEQLLARLFPK--- 116

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                       +     SI     + +    AF+ +Q+GC+ FCT+C++PY RG   SR
Sbjct: 117 ------------ENLPEFSITQFDSHTR----AFIKVQDGCNSFCTYCIIPYVRGRSRSR 160

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE-KCTFSDLLYSLSEIKGLVRLR 264
           S+ +V++EA+ LI NG  EI L G N+  + GK   GE     S+L+  + ++ GL RLR
Sbjct: 161 SVEEVLEEAKALISNGYKEIVLTGINIGDFDGKVAKGETPVRLSELVRMVDQLPGLERLR 220

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
            ++  P ++ D L  A  +       +H+ +QSGS+ ILK MNR++T   +   ID++++
Sbjct: 221 LSSIDPDEVDDELSDAILNGKHTCHSMHIVLQSGSNVILKRMNRKYTRQIFLDTIDKLKA 280

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
              D   ++D IVGFPGETD DF+ T++++  + +A+   F YS R  T  + M  +V
Sbjct: 281 AHSDFTFTTDIIVGFPGETDLDFQDTIEVMKHVKFAKVHMFPYSDRPRTRSNLMPNKV 338


>gi|302671973|ref|YP_003831933.1| MiaB-like tRNA modifying enzyme [Butyrivibrio proteoclasticus B316]
 gi|302396446|gb|ADL35351.1| MiaB-like tRNA modifying enzyme [Butyrivibrio proteoclasticus B316]
          Length = 454

 Score =  182 bits (462), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 120/413 (29%), Positives = 216/413 (52%), Gaps = 28/413 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R  + + GC++N Y+   M       G   V   + AD+ ++NTC +   A  K    L 
Sbjct: 13  RVAMHNLGCKVNSYEMDVMSIRLKEAGCIIVPFTEKADIYIINTCTVTNIADRKSRQMLH 72

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL----- 140
           + +       KE  D +VV  GC  +  G + +++   V++ VG      + ++L     
Sbjct: 73  KAK-------KENPDSIVVAVGCYVET-GIDGVKKDDCVDLAVGNNKKSEIVDILNTFLE 124

Query: 141 ------ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCV 194
                 ++   G  ++D +++  +++E + + +   + +    A++ IQ+GC++FC++CV
Sbjct: 125 ARGEYDDKTLGGNSIIDINHT--NEYENMQLSEMPEHTR----AYIKIQDGCNQFCSYCV 178

Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL 254
           +PY RG   SR +S+++ E   L+  G  E+ L G ++ ++   GLD  +    DL+  +
Sbjct: 179 IPYARGRVRSREMSEILTEIEGLVQKGCKEVVLTGIHIGSY---GLDKGEPMLVDLVEKI 235

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
           ++I G+ R+R  +  PR ++    +    +D L P+ HL +QSG D +LK MNR +TA E
Sbjct: 236 ADISGIDRIRLGSIEPRLITAENTRRLAAIDKLCPHFHLSLQSGCDTVLKRMNRHYTASE 295

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
           + + +  +R      AI++D IVGFPGET+++F      V+KI + +   FKYSPR GT 
Sbjct: 296 FEESVRLLREAFDRPAITTDVIVGFPGETEEEFEECRAFVEKIDFYEMHVFKYSPRKGTV 355

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK 427
            + M EQ+ +  K  R   L K  +EQ   + ++ +G+ ++VL E   +  GK
Sbjct: 356 AAGMKEQLTDREKTVRSDVLLKLTKEQSKLYRESFIGEKVDVLWEDSEEINGK 408


>gi|197286995|ref|YP_002152867.1| ribosomal protein S12 methylthiotransferase [Proteus mirabilis
           HI4320]
 gi|227354764|ref|ZP_03839181.1| 2-methylthioadenine synthetase [Proteus mirabilis ATCC 29906]
 gi|238066464|sp|B4F137|RIMO_PROMH RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|194684482|emb|CAR46244.1| conserved hypothetical protein [Proteus mirabilis HI4320]
 gi|227165082|gb|EEI49913.1| 2-methylthioadenine synthetase [Proteus mirabilis ATCC 29906]
          Length = 443

 Score =  182 bits (462), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 132/464 (28%), Positives = 233/464 (50%), Gaps = 47/464 (10%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           VP+  FV S GC  N+ DS R+     ++GY+ V + DDADL+++NTC   + A ++   
Sbjct: 7   VPKIGFV-SLGCPKNLVDSERILTELRTEGYQVVPTYDDADLVIVNTCGFIDSAVQESLE 65

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +G         + E G   V+V GC+   E + I    P V  + GP +Y ++      
Sbjct: 66  AIGEA-------LDENGK--VIVTGCLGAKENQ-IREVHPKVLEITGPHSYEQV-----L 110

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           +     V    +   + F  L + + G        A+L I EGC+  CTFC++P  RG  
Sbjct: 111 SHIHHYVPKPSH---NPFTSL-VPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGDL 166

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLL 251
            SR + +V++EA++L++ GV E+ ++ Q+ +A           W G  +   K +   L 
Sbjct: 167 DSRPIGEVLNEAKRLVNAGVKELLVISQDTSAYGVDTKHQTGFWDGMPV---KTSMVSLC 223

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
             L+++   VRL Y   +P       + A G +   +PYL +P+Q  S ++LK M R  +
Sbjct: 224 EQLAKLGIWVRLHYVYPYPHVDEVIPLMAEGKI---LPYLDIPLQHASPKVLKLMKRPGS 280

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
                + + R R + P++ + S FIVGFPGET++DF+  +D + +    +   FKYSP  
Sbjct: 281 VERTLERVKRWREICPELTLRSTFIVGFPGETEEDFQMLLDFLTEARLDRVGCFKYSPVE 340

Query: 372 GTPGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--G 426
           G   + + +QV E VK E   R + LQ+++  +++      +G+++ V+I++  +E   G
Sbjct: 341 GAKANELPDQVPEEVKEERYHRFMQLQQQISTERLQEK---IGKVLPVIIDEVDEEGAIG 397

Query: 427 KLVGRSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468
           + +  +P +   V  ++  ++  G I++V I       L+G +V
Sbjct: 398 RSMADAPEIDGAVYLNEQFDVEPGQIVRVLIEHADEYDLWGTIV 441


>gi|86749957|ref|YP_486453.1| hypothetical protein RPB_2840 [Rhodopseudomonas palustris HaA2]
 gi|123292522|sp|Q2IW68|RIMO_RHOP2 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|86572985|gb|ABD07542.1| conserved hypothetical protein [Rhodopseudomonas palustris HaA2]
          Length = 441

 Score =  182 bits (462), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 141/466 (30%), Positives = 223/466 (47%), Gaps = 48/466 (10%)

Query: 18  VDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA 77
           + Q   P+  FV S GC   + DS R+     ++GYE     D ADL+++NTC   + A 
Sbjct: 1   MQQAAAPKISFV-SLGCPKALVDSERIITRLRAEGYELARQHDGADLVIVNTCGFLDSAK 59

Query: 78  EKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLP 137
           ++  + +G                 V+V GC+  AE E+I    P V  + GPQ Y  + 
Sbjct: 60  QESLAAIGEAMAANGK---------VIVTGCMG-AEPEQIEAAYPGVLSITGPQQYESVL 109

Query: 138 ELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197
           + + RA+        D   E   + + +    Y       A+L I EGC+  C+FC++P 
Sbjct: 110 DAVHRAKPALHNPHLDLVPE---QGIRLTPRHY-------AYLKISEGCNNRCSFCIIPK 159

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCT 246
            RG   SRS + V+ EA KL+  GV E+ ++ Q+ +A           W+ + +   +  
Sbjct: 160 LRGDLASRSAADVLREAEKLVAAGVKELLVISQDTSAYGVDLKYAESPWKDRSV---RAK 216

Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306
           F DL   L E+   VRL Y   +P    D +I    +  VL PYL +P Q  S  +LK M
Sbjct: 217 FIDLARELGELGAWVRLHYVYPYPH--VDEVIGLMTEGKVL-PYLDIPFQHASPDVLKLM 273

Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
            R     +  + I R R+  PD+A+ S FIVGFPGET+ DF   +D +D+    +  +FK
Sbjct: 274 KRPAAQDKTLERIKRWRAQCPDLALRSTFIVGFPGETERDFEFLLDWLDEAEIDRLGAFK 333

Query: 367 YSPRLGTPGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK 423
           Y P  G P + +  QV + VK E   RL+  Q+ +  +++      VG   +++I++ G 
Sbjct: 334 YEPVAGAPSNALEGQVPDEVKQERWNRLMARQQAISARRLKRK---VGTRQQIIIDEIGP 390

Query: 424 --EKGKLVGRSPWLQ-SVVLNSKNH-NIGDIIKVRITDVKISTLYG 465
              KG+    +P +  SV L S+    +G+I+  +I       L+G
Sbjct: 391 TVAKGRSKADAPEIDGSVYLTSRRPLRVGEIVTAKIDRADAYDLHG 436


>gi|114571391|ref|YP_758071.1| MiaB-like tRNA modifying protein [Maricaulis maris MCS10]
 gi|114341853|gb|ABI67133.1| MiaB-like tRNA modifying enzyme [Maricaulis maris MCS10]
          Length = 444

 Score =  182 bits (462), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 128/396 (32%), Positives = 196/396 (49%), Gaps = 28/396 (7%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           ++GC++N ++S  M      QG          + I++NTC +  +A  +    + R R  
Sbjct: 31  TFGCRLNAWESEVMRKHARDQGL--------TNTILVNTCAVTNEAVRQARQNIRRAR-- 80

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG---K 147
                ++  D  ++V GC AQ +  ++  R P VN V+G     +          G   K
Sbjct: 81  -----RDNPDAQIIVTGCAAQVD-PDMFGRMPEVNRVIGNDDKLKAETFKPADLLGGTEK 134

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
             V+   SV +    L  V+G   R R   A++ +Q GCD  CTFC++PY RG   S   
Sbjct: 135 VRVNDIMSVTETAGHL--VEGMEGRAR---AYVQVQNGCDHRCTFCIIPYGRGNSRSVGA 189

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS-LSEIKGLVRLRYT 266
            +VVD+ + L+D+G  E+ L G ++ +W G+ L G K     L+ S L  +  L RLR +
Sbjct: 190 GEVVDQIKTLVDSGHSEVVLTGVDLTSW-GEDLPG-KPPLGRLVQSILKHVPDLPRLRLS 247

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
           +    ++ + L +A      + PYLHL +Q+G D ILK M RRH   +   + +R++S R
Sbjct: 248 SIDAIEIDEALFEAVTGETRIAPYLHLSLQAGDDMILKRMKRRHLRDDAIALCERLKSAR 307

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           P+IA  +D I GFP ETD  F  ++ LVD+   A    F YSPR GTP + M  Q++  V
Sbjct: 308 PEIAFGADMIAGFPTETDAMFENSIRLVDECRLAYLHVFPYSPRPGTPAARM-PQLERAV 366

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422
             +R   L+ K  E      D  +G     L+EK G
Sbjct: 367 IKDRANRLRAKADEALSRHLDGMIGLERAALVEKPG 402


>gi|148654700|ref|YP_001274905.1| MiaB-like tRNA modifying protein YliG [Roseiflexus sp. RS-1]
 gi|238066581|sp|A5UQQ2|RIMO_ROSS1 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|148566810|gb|ABQ88955.1| MiaB-like tRNA modifying enzyme YliG [Roseiflexus sp. RS-1]
          Length = 472

 Score =  182 bits (461), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 141/472 (29%), Positives = 236/472 (50%), Gaps = 43/472 (9%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +F + + GC  N  DS  M  +  +QG+  V   DDAD++V+NTC     A E+    L 
Sbjct: 2   KFHIITLGCPKNQVDSEGMSSILAAQGHTPVAHADDADVVVVNTCSFIAAAREETLDVLR 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER--- 142
            +   K       G  LV  AGC+A++    ++  +P V+ ++  + + R+ ++++    
Sbjct: 62  EVAARKTP-----GQYLVA-AGCMAESH-SALVAAAPGVDALLSTREWMRIGDVVDTLQR 114

Query: 143 -----ARFGKRVVDTDYSVEDKFERLSIVDGGYN-------RKR--GVTAFLTIQEGCDK 188
                A    R +    S     + L  V G Y        R+R  G +A+L I +GC+ 
Sbjct: 115 EPAVAASSAAREIIPLSSAPASSDDLR-VPGAYADWRTAPIRRRITGPSAYLKISDGCNL 173

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-RGKGL-DGEKCT 246
            C FC +P  +G   S+++  ++ EA++L D GV EI L+ Q++  + R  GL DG    
Sbjct: 174 RCAFCTIPSFKGDMRSKAVGAILGEAQELADAGVKEIVLVAQHLTDYGRDLGLKDGLALL 233

Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306
             +L   L + +  VRL Y  ++P  +S+ LI        +  YL +P+Q      L+ M
Sbjct: 234 LDELCAVLPKDR-WVRLMY--AYPHGISERLIATMARHPQICHYLDMPLQHAHPETLRRM 290

Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
           +R   +   R++I  +R+  PDIA+ S FI+GFPGET  +FRA    ++++ + +   F+
Sbjct: 291 HRPPDSDRTRRLIADLRAAMPDIALRSTFIIGFPGETSAEFRALTAFLEEVQFDRVGVFR 350

Query: 367 YSPRLGTPGSNMLEQVDENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK 423
           YS   GTP + + +Q+ + V   R   ++ LQ+ +  Q+   N   VG++I VL+E  G+
Sbjct: 351 YSREPGTPAAALPDQIPQRVIERRWHTIMRLQQGISRQR---NRRWVGRVIRVLVEGQGQ 407

Query: 424 -EKGKL--VGRS----PWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            + G+L  VGRS    P +   VL       G  + VR+T      L+GE+V
Sbjct: 408 TDDGRLLSVGRSFRDAPEVDGQVLFWGTAATGTFVDVRVTQALDYDLWGEMV 459


>gi|240104185|ref|YP_002960494.1| RNA modification enzyme, MiaB family (MiaB) [Thermococcus
           gammatolerans EJ3]
 gi|239911739|gb|ACS34630.1| RNA modification enzyme, MiaB family (MiaB) [Thermococcus
           gammatolerans EJ3]
          Length = 424

 Score =  182 bits (461), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 134/444 (30%), Positives = 225/444 (50%), Gaps = 27/444 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R +V+SYGC  N  D   ME +    GYE     D AD +V+NTC +++    K+   + 
Sbjct: 3   RVYVESYGCSRNRADGEIMEAILLRAGYELAEGPDKADYVVVNTCAVKDPTELKM---VR 59

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           RIR L +S  K      V+  GC+     E I    P V+ ++G ++  R+ E +  A  
Sbjct: 60  RIRELLDSGKK------VIATGCLVHVNPEAI---DPRVSGILGVKSIDRIAEAISVAER 110

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G++++  +   E   ++L +       K GV+  + I EGC   CT+C   + RG+  S 
Sbjct: 111 GEKLISVEGWRERNPDKLELPR---LWKPGVSFVVPISEGCLNACTYCATRFARGVLKSY 167

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
               V+   R+ +  G  EI L  ++   +   G D      ++LL  ++ I+G  R+R 
Sbjct: 168 KPELVIKWVREAVSRGYREIILSSEDTGCY---GFD-IGTNLAELLDEITAIEGDFRVRV 223

Query: 266 TTSHPRDMS---DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
              +P  +    D LI+A+ D + +  +LHLPVQSG + IL+ M R +T  E+ +I++  
Sbjct: 224 GMMNPNHVLKFLDELIEAYQD-EKIYKFLHLPVQSGDNEILRRMGRTYTVEEFEEIVNAF 282

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R   PD+ +++D IVGFPGE+D+ FR T++LV ++   +    +YS R GT  +   +Q+
Sbjct: 283 RKKIPDLNLNTDIIVGFPGESDEAFRNTVELVKRVKPDKINVSRYSARPGTIAARW-KQL 341

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
              +  ER   L +         N A VG+ +EVL+   GK KG + GR+   + ++L+S
Sbjct: 342 PGWLVKERSRELHRLRLAIAYEINRAYVGRTVEVLVHGPGK-KGGIEGRTFNYKDIILDS 400

Query: 443 KNHNIGDIIKVRITDVKISTLYGE 466
                G  ++V++     + L G+
Sbjct: 401 --GEAGGFVRVKVERATATYLLGK 422


>gi|162148088|ref|YP_001602549.1| hypothetical protein GDI_2305 [Gluconacetobacter diazotrophicus PAl
           5]
 gi|209542702|ref|YP_002274931.1| MiaB-like tRNA modifying enzyme [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|161786665|emb|CAP56248.1| conserved hypothetical protein [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|209530379|gb|ACI50316.1| MiaB-like tRNA modifying enzyme [Gluconacetobacter diazotrophicus
           PAl 5]
          Length = 420

 Score =  182 bits (461), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 135/444 (30%), Positives = 211/444 (47%), Gaps = 38/444 (8%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRI- 87
           + ++GC++N Y+S  M      +G+    ++DD  +I++NTC +  +A  +    + R  
Sbjct: 7   ILTFGCRLNTYESEVM------RGH--AAALDD--VIIVNTCAVTAEAERQARQAIRRAH 56

Query: 88  RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147
           R+   +RI        VV GC AQ + +      P V  V+G +      E LE A +  
Sbjct: 57  RDRPGARI--------VVTGCAAQIDPDR-WSALPGVTRVLGNR------EKLEAASWTP 101

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVT-AFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
             +   ++V D       V        G T AF+ +Q+GCD  CTFC++P+ RG   S  
Sbjct: 102 AAMQDGHAVSDIMAATETVPHLVTEFAGRTRAFVEVQQGCDHRCTFCIIPFGRGPSRSVP 161

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
           +  VV++ R L+ +G  EI L G ++ +W G  L G           L+ +  L RLR +
Sbjct: 162 VGAVVEQVRALVASGYREIVLTGVDITSW-GGDLPGRPALGQLCRRVLALVPELERLRLS 220

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
           +  P ++ D L +        MPYLHL +Q+GSD +LK M RRH   +  +++DR R+ R
Sbjct: 221 SVDPVEIDDDLWRLLAQEGRFMPYLHLSLQAGSDMVLKRMKRRHLVEDVARVLDRARACR 280

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           PD+ I +D I GFP ETD  F  T+D V          F YS R GTP + M   V   V
Sbjct: 281 PDLGIGADVIAGFPTETDALFAETLDFVRAQRLPYLHVFPYSERPGTPAARM-PAVPVAV 339

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK----HGKEKGKLVGRSPWLQSVVLNS 442
           + ER   L+   +     ++ + +G+ + VL+E     H +E   +      L    L+ 
Sbjct: 340 RKERAAQLRAAGQAAARDYHASLLGRTLNVLLETATTGHSEEFAPVR-----LAPDRLDG 394

Query: 443 KNHNIGDIIKVRITDVKISTLYGE 466
                G I+ VR T +  + L  E
Sbjct: 395 TAAEAGRIVTVRATAIDENGLVAE 418


>gi|317401271|gb|EFV81912.1| hypothetical protein HMPREF0005_01131 [Achromobacter xylosoxidans
           C54]
          Length = 438

 Score =  182 bits (461), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 145/468 (30%), Positives = 228/468 (48%), Gaps = 56/468 (11%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  FV S GC   + DS R+     ++GY+     +DAD++V+NTC   + A  +    
Sbjct: 4   PKVGFV-SLGCPKALVDSERILTQLRTEGYQVTPEYNDADVVVVNTCGFIDSAKAESLEA 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRR-SPIVNVVVGPQTYYRLPELLER 142
           +G         + E G   V+V GC+   E   ++R   P V  V GPQ Y    E + R
Sbjct: 63  IGEA-------LAENGK--VIVTGCMGVEES--VIRNVHPSVLAVTGPQQY----EEVVR 107

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           A     V D     +D    L +V   G        A+L I EGC+  C+FC++P  RG 
Sbjct: 108 A-----VHDAAPPKKDHNPYLDLVPPQGVKLTPRHYAYLKISEGCNHRCSFCIIPSMRGD 162

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDL 250
            +SR +  V+ EA +L+  GV E+ ++ Q+ +A           W G+ +   +   ++L
Sbjct: 163 LVSRPVGDVLSEAERLVKAGVKELLVISQDTSAYGVDVKYRSGFWNGRPV---RTRMTEL 219

Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
             +LSE+    RL Y   +P       + A G +   +PYL +P Q  S RILK+M R  
Sbjct: 220 CTALSEMGVWTRLHYVYPYPHVDEVIPLMAEGKI---LPYLDIPFQHASPRILKAMKR-- 274

Query: 311 TAYEYRQI--IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
            A+E + +  I + R   PD+ I S FIVGFPGET++DF+  +D + +    +   F+YS
Sbjct: 275 PAFEDKTLARIKQWRETCPDLTIRSTFIVGFPGETEEDFQYLLDWMQEAQLDRVGCFQYS 334

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDA----CVGQIIEVLIEKHGKE 424
           P  G P + +   V + VK ER     ++  E Q S + A     VG+ IEVLI++   +
Sbjct: 335 PVEGAPANLLDNPVPDEVKQERW----ERFMEMQQSISTARLARKVGREIEVLIDEVDDD 390

Query: 425 K--GKLVGRSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468
              G+  G +P +   V  S +  +  GD+++ R+TD     L+ + V
Sbjct: 391 GAVGRSAGDAPEIDGCVYVSSDRKLKAGDLVRARVTDSDEYDLWADTV 438


>gi|257467023|ref|ZP_05631334.1| hypothetical protein FgonA2_06247 [Fusobacterium gonidiaformans
           ATCC 25563]
 gi|315918160|ref|ZP_07914400.1| radical SAM domain-containing protein [Fusobacterium gonidiaformans
           ATCC 25563]
 gi|313692035|gb|EFS28870.1| radical SAM domain-containing protein [Fusobacterium gonidiaformans
           ATCC 25563]
          Length = 444

 Score =  182 bits (461), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 128/441 (29%), Positives = 227/441 (51%), Gaps = 32/441 (7%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           F + S GC  N+ DS  +  +  + +G++  N +++ADL+++NTC     A ++    + 
Sbjct: 3   FALISLGCSKNLVDSENLTGILVNRKGFQLTNEIEEADLVLINTCGFIGDAKKESIETIL 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +   K  R+K+     +VV GC+AQ   EE+L+  P ++ V+G     ++  +++    
Sbjct: 63  EVAEYKQERLKK-----IVVCGCLAQRYAEELLQEIPEIDAVIGTGEIDKIESVVDEILQ 117

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGV---TAFLTIQEGCDKFCTFCVVPYTRGIE 202
            K+ V+T       F  L   D   +R       TA+L I EGC++ CT+C++P  RG  
Sbjct: 118 DKKAVETS-----SFHFLPNADT--DRVLTTPPHTAYLKISEGCNRRCTYCIIPQLRGDL 170

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE-KCTFSDLLYSLSEIKGLV 261
            SR+   +++EA++L+  GV E+ LL Q    +   G+D   K    DLL  L +I+GL 
Sbjct: 171 RSRTKEDILEEAKRLVSGGVRELNLLAQETTEY---GIDNYGKKALPDLLRELVKIEGLD 227

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
            +R     PR ++D LI+     + +  Y  +P+Q  S  +L+ M R  T  + ++++ +
Sbjct: 228 WIRTYYMFPRSITDELIEVMKQEEKICKYFDIPIQHISSNMLRRMGRAITGEQTKELLYK 287

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           IR   P+    +  IVGFPGET+++F+   D V++  +     F+YS    T    M  Q
Sbjct: 288 IRKEIPEAVFRTSLIVGFPGETEEEFQELKDFVEEFQFDYIGVFQYSREEDTVAYTMENQ 347

Query: 382 VDENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-----KGKLVGRSP 433
           + E VK  R   L+ LQ ++ E   S N   +G+ +EVLI+    E     +G+L  ++ 
Sbjct: 348 IPEEVKERRQAELINLQNEIAE---SKNRKLLGREVEVLIDGISSESEYMLEGRLKTQAL 404

Query: 434 WLQSVVLNSK-NHNIGDIIKV 453
            +   VL S+    +G+++++
Sbjct: 405 DIDGKVLTSEGTAQVGEMVRI 425


>gi|217967846|ref|YP_002353352.1| MiaB-like tRNA modifying enzyme YliG [Dictyoglomus turgidum DSM
           6724]
 gi|217336945|gb|ACK42738.1| MiaB-like tRNA modifying enzyme YliG [Dictyoglomus turgidum DSM
           6724]
          Length = 440

 Score =  182 bits (461), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 133/452 (29%), Positives = 223/452 (49%), Gaps = 37/452 (8%)

Query: 33  GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA---AEKVYSFLGRIRN 89
           GC  N  D+  +     + GY      ++ADLI++NTC   + A   AE+  S L + + 
Sbjct: 10  GCSKNQVDTEVLMGFLKNLGYTFTPHSEEADLILVNTCAFIKPAWQEAEENISLLEKYKK 69

Query: 90  LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149
           +         +L +VV GC  +   EE+  + P V++ +GP  Y +   L+     GKR 
Sbjct: 70  INE-------NLKIVVVGCYVERFKEELENKYPFVDLFIGPGEYEKFVSLITSN--GKRG 120

Query: 150 V----DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           +     + +    K  R+ I    +        ++ I EGC+ FC++C +P+ RG   SR
Sbjct: 121 IYSSPASSFIYNHKMPRILISPNFW-------VYVKIAEGCNNFCSYCTIPFIRGRLRSR 173

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           S+  +V E    I  GV E+ L+ Q+   + G+ L G + +  DLL ++ +I+G   +R 
Sbjct: 174 SIEDIVKEIEIWIGKGVKEVNLIAQDTTRY-GEDLYG-RPSLVDLLRNIEKIRGDFYVRI 231

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
             S+P  +S+ LI+A  + + ++PY  +P+Q  SD ILK MNR +   +  ++  RI+  
Sbjct: 232 LYSYPSRISEKLIEAIKNSEKVVPYFDIPIQHVSDVILKRMNRSYKKDDIIKLWHRIKEN 291

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
             +  I +  +VGFPGET+++F   +D + K  + +  +F Y    GT       QVDE+
Sbjct: 292 FENAVIRTTVMVGFPGETEENFEELIDFIKKYPFDRLGAFIYYNENGTISKGFENQVDED 351

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRS----PWLQSVVL 440
            K  R   L +  ++     N   +G+  +V+IE    EKGK  VGRS    P +  +++
Sbjct: 352 EKLRRYEILMETQKKISKKLNAKLLGKEFDVIIE---DEKGKYFVGRSWREAPEVDGLIM 408

Query: 441 ----NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 K   IG  ++V+I   +   L GELV
Sbjct: 409 IPKEKEKTLKIGSKVRVKIKKYRSYDLLGELV 440


>gi|281412050|ref|YP_003346129.1| MiaB-like tRNA modifying enzyme YliG [Thermotoga naphthophila
           RKU-10]
 gi|281373153|gb|ADA66715.1| MiaB-like tRNA modifying enzyme YliG [Thermotoga naphthophila
           RKU-10]
          Length = 430

 Score =  182 bits (461), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 137/452 (30%), Positives = 225/452 (49%), Gaps = 38/452 (8%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA----EKVY 81
           R  +K  GC  N  D   +  +    G+E V  + DAD++VL+TC   E A     ++++
Sbjct: 2   RVGIKVLGCPKNEADCEVLAGVLREGGHEIVFDVKDADVVVLDTCAFIEDAKRESIDEIF 61

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           SF+           K+     +VV GC+ Q   EE+ +  P V+  +G      +   LE
Sbjct: 62  SFVD---------AKDQYSYKLVVKGCLVQRYYEELKKEIPEVDQWIGVVDPEEIANALE 112

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           +      V +   +V    +R+ + +  Y       A++ I +GCD+ CTFC +P  +G 
Sbjct: 113 KGT--DLVPNRPETVYRYRKRIDLEERPY-------AYVKISDGCDRGCTFCSIPSFKGS 163

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGL 260
             SRS+  +  E   L+  G  EI L+ Q+  ++   G+D   K    DLL  L+ + G 
Sbjct: 164 LRSRSIEDITHEVEDLLKEGKKEIILVAQDTTSY---GIDLYRKQALPDLLRRLNSLNGE 220

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
             +R    HP  +++ +I A  +LD ++ Y  +PVQ GSD+ILK M R  ++ E ++++ 
Sbjct: 221 FWIRVMYLHPDHLTEEIISAMLELDKVVKYFDVPVQHGSDKILKLMGRTKSSEELKKMLS 280

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
            IR   PD  + +  IVGFPGET++DF      V++I + +  +F YS   GT   N+ E
Sbjct: 281 SIRERFPDAVLRTSIIVGFPGETEEDFEELKRFVEEIQFDKLGAFVYSDEEGTVAFNLKE 340

Query: 381 QVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----P 433
           +VD  V   + E LL LQ ++   ++   D  +G+ ++ L+E  GKE   LVGR+    P
Sbjct: 341 KVDPEVAKRRQEELLLLQAEISNSRL---DRFIGRKLKFLVE--GKEGKFLVGRTWTEAP 395

Query: 434 WLQSVVLNSKNHNIGDIIKVRITDVKISTLYG 465
            +  VV       IGD ++V I +     ++G
Sbjct: 396 EVDGVVFVRGKGKIGDFLEVVIKEHDEYDMWG 427


>gi|77457418|ref|YP_346923.1| hypothetical protein Pfl01_1191 [Pseudomonas fluorescens Pf0-1]
 gi|123758469|sp|Q3KH22|RIMO_PSEPF RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|77381421|gb|ABA72934.1| SSU ribosomal protein S12P methylthiotransferase [Pseudomonas
           fluorescens Pf0-1]
          Length = 445

 Score =  182 bits (461), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 143/471 (30%), Positives = 232/471 (49%), Gaps = 61/471 (12%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  FV S GC   + DS R+      +GY+ V++  DAD++V+NTC   + A  +    
Sbjct: 10  PKVGFV-SLGCPKALVDSERILTQLRMEGYDVVSTYQDADVVVVNTCGFIDSAKAESLEV 68

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G         IKE G   V+V GC+   EG  I    P V  V GPQ Y          
Sbjct: 69  IGE-------AIKENGK--VIVTGCMGVEEGN-IRDVHPSVLAVTGPQQY---------- 108

Query: 144 RFGKRVVDTDYSV-EDKFERLSIVD----GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
              ++VV+  + V   K +   ++D     G        A+L I EGC+  C+FC++P  
Sbjct: 109 ---EQVVNAVHEVVPPKQDHNPLIDLVPPQGIKLTPRHYAYLKISEGCNHSCSFCIIPSM 165

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTF 247
           RG  +SR +  V+DEA++L+ +GV E+ ++ Q+ +A           W G  +   K   
Sbjct: 166 RGKLVSRPVGDVLDEAQRLVKSGVKELLVISQDTSAYGVDVKYRTGFWNGAPV---KTRM 222

Query: 248 SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307
           ++L  +LS +   VRL Y   +P       + A G    ++PYL +P Q  S ++LKSM 
Sbjct: 223 TELCEALSTLGVWVRLHYVYPYPHVDELIPLMAAGK---ILPYLDIPFQHASPKVLKSMK 279

Query: 308 RRHTAYEYRQI--IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           R   A+E + +  I   R + PD+ I S FIVGFPGET++DF+  +D + +    +   F
Sbjct: 280 R--PAFEDKTLARIKNWREICPDLIIRSTFIVGFPGETEEDFQYLLDWLTEAQLDRVGCF 337

Query: 366 KYSPRLGTPGSNM-LEQVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKH 421
           +YSP  G P +++ LE V ++VK    ER +  Q+ +   ++      +G+ IEVL+++ 
Sbjct: 338 QYSPVEGAPANDLDLEVVPDDVKQDRWERFMAHQQAISSARLQLR---IGREIEVLVDEV 394

Query: 422 GKEK--GKLVGRSPWLQSVVL--NSKNHNIGDIIKVRITDVKISTLYGELV 468
            ++   G+    +P +   V   N  N   GD +  ++TD     L+ E +
Sbjct: 395 DEQGAVGRCFFDAPEIDGNVFIDNGSNLKPGDKVWCKVTDADEYDLWAEQI 445


>gi|307943540|ref|ZP_07658884.1| MiaB-like tRNA modifying enzyme [Roseibium sp. TrichSKD4]
 gi|307773170|gb|EFO32387.1| MiaB-like tRNA modifying enzyme [Roseibium sp. TrichSKD4]
          Length = 459

 Score =  182 bits (461), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 136/445 (30%), Positives = 216/445 (48%), Gaps = 36/445 (8%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V ++GC++N Y+S  M+    + G +        D I++NTC +     E V      +R
Sbjct: 5   VVTFGCRLNAYESEVMKREADAAGLK--------DAILINTCAV---TGEAVRQARQAVR 53

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG-- 146
             K    ++  +  V+V GC AQ E          V++V+G           E A FG  
Sbjct: 54  KAK----RDNPNAKVIVTGCAAQTE-TATFSEMEEVDLVLGNTEKLERKAYEEVAAFGVS 108

Query: 147 ---KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
              K  V+   SV +    L  +DG   R R   AF+ +Q GCD  CTFC++PY RG   
Sbjct: 109 ETEKVRVNDIMSVTETAGHL--IDGLEGRAR---AFVQVQNGCDHRCTFCIIPYGRGNSR 163

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           S  +  VVD+ ++L+ NG  EI + G ++ ++ G  L G     + +   L+ +  L RL
Sbjct: 164 SVPMGVVVDQIKRLVGNGYNEIVITGVDITSY-GADLPGSPKLGTLIAKILTLVPDLKRL 222

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R ++    +  + L+    +   LMP+ HL +Q+G D ILK M RRH   +  +  + +R
Sbjct: 223 RLSSIDSIEADEELMHVIANDHRLMPHFHLSLQAGDDMILKRMKRRHLRADTIRFCEDVR 282

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           ++RPD+   +D I GFP ET+  F  ++ +VD+ G      F +SPR GTP + M  Q++
Sbjct: 283 AMRPDVVFGADIIAGFPTETEAMFENSLKIVDECGLTHLHVFPFSPRPGTPAARM-PQLE 341

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
             +  ER   L+ K  E  +    A VG + +VLIEK G      +GR+     V ++  
Sbjct: 342 RKIVKERGARLRAKGEEALLKHLQAEVGGVRKVLIEKEG------LGRTEQFTQVEVDGG 395

Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468
               GDI++ RI       L G+++
Sbjct: 396 --AAGDIVETRIKGQTGRHLLGDIL 418


>gi|163782456|ref|ZP_02177454.1| hypothetical protein HG1285_06700 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882489|gb|EDP75995.1| hypothetical protein HG1285_06700 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 410

 Score =  182 bits (461), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 121/395 (30%), Positives = 207/395 (52%), Gaps = 18/395 (4%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC+MN +D+  M   F   GYE V+  + AD+ V+NTC +           L R +  
Sbjct: 7   TLGCRMNQFDTDLMRSRFAESGYEVVDFEEPADVYVINTCTVTSGGDRSSRQALYRAK-- 64

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA--RFGKR 148
                +   + LVV  GC AQ + EE+      V++VVG      + +L+E A     ++
Sbjct: 65  -----RRNPNALVVATGCYAQVKPEELASLEE-VDLVVGNTHKDEILKLVEEALENRDRK 118

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           VV  +   + + +    V   +   R    F+ +QEGC+KFCTFCV+P+ RG   S    
Sbjct: 119 VVVGEIFRQKELKNFDTV-LYFEESR---PFIKVQEGCNKFCTFCVIPFARGKVRSAPKE 174

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
           +V+++ R L   G  E+ L G  ++ +   G D     + +LL  + +++G+  +R ++ 
Sbjct: 175 KVIEQVRLLALQGFEEVVLSGTQLSQY---GWDVGSSLY-ELLLEVLKVEGIKLVRLSSM 230

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
           H +++SD L++       + P+ HL +QSGSDR+LK M R +   E+R++++ I   RP+
Sbjct: 231 HVKEISDELLELVVSERRIAPHFHLSLQSGSDRVLKLMERGYGREEFREVVEFIVKRRPE 290

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
            A+ +D I GFPGE+++DFR T+  V++I +A    F YS R  T  S    +V E VK 
Sbjct: 291 SAVGTDVIAGFPGESEEDFRDTLKFVEEIPFAYLHVFPYSDRPFTKASRFGNKVPEGVKK 350

Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK 423
           ER+  L +    ++  F +  +G+ +   +  +G+
Sbjct: 351 ERVKLLGELDEIKRKEFYEGNMGRKLRATVLGNGR 385


>gi|332306183|ref|YP_004434034.1| MiaB-like tRNA modifying enzyme YliG [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332173512|gb|AEE22766.1| MiaB-like tRNA modifying enzyme YliG [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 473

 Score =  182 bits (461), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 129/420 (30%), Positives = 205/420 (48%), Gaps = 52/420 (12%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ DS R+     ++GY+ VN+ +DADL+++NTC   + A ++    +G     
Sbjct: 39  SLGCPKNLVDSERILTQLRTEGYDVVNTYNDADLVIVNTCGFIDTAVQESLDTIGEA--- 95

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               + E G   V+V GC+   E +EI    P V  + GP  Y             + VV
Sbjct: 96  ----LAENGK--VIVTGCLGIKE-DEIREVHPNVLAITGPHAY-------------EEVV 135

Query: 151 DTDYSVEDKFERLS-------IVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           +    V +   + S       + D G        A+L I EGC+  CTFC++P  RG  +
Sbjct: 136 N---QVHEHLPQPSHNPYLNLVPDIGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGDLV 192

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLY 252
           SR + +++DEA++L + GV E+ ++ Q+ +A           W G  +   K   ++L  
Sbjct: 193 SRPIGEILDEAQRLKNAGVKELLVISQDTSAYGVDVKNKMGFWNGMPV---KTGMTELCE 249

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
            L E+   VRL Y   +P       + A G +   +PYL +P Q  S RILK M R   A
Sbjct: 250 KLGEMGMWVRLHYVYPYPSVDKVMPLMASGKV---LPYLDIPFQHASPRILKLMKRPAAA 306

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
               + I + R + P++ I S FIVGFPGET++DF+  +D +D+    +   FKYS   G
Sbjct: 307 ERTMERIKKWRELCPELVIRSTFIVGFPGETEEDFQMLLDFLDEAQLERVGCFKYSDVEG 366

Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS 432
              +++ + V E VK ER     +K ++   +     +G  I+VLI++  +E    +GRS
Sbjct: 367 AKANDLPDPVSEEVKQERFERFMQKQQQISTAKLQRRIGSTIQVLIDEVDEEGA--IGRS 424


>gi|332292790|ref|YP_004431399.1| MiaB-like tRNA modifying enzyme [Krokinobacter diaphorus 4H-3-7-5]
 gi|332170876|gb|AEE20131.1| MiaB-like tRNA modifying enzyme [Krokinobacter diaphorus 4H-3-7-5]
          Length = 447

 Score =  181 bits (460), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 132/432 (30%), Positives = 216/432 (50%), Gaps = 44/432 (10%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N  ++  +   F  +G+++V   + AD+ V+NTC + E A ++  S + + + +
Sbjct: 11  TLGCKLNFSETSTIARSFGQEGFDKVEFSEPADVYVINTCSVTENADKRFKSIVKQAQKV 70

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-------ERA 143
                 EG   + V  GC AQ + EE L     V++V+G    + +   +       +R+
Sbjct: 71  N----PEG---VTVAVGCYAQLKPEE-LADVDGVDLVLGATEKFNVTSYINDLLDNPDRS 122

Query: 144 RFGKRV-----VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
           + G  V      D D+ V       SI D    R R   AFL +Q+GCD  CT+C +P  
Sbjct: 123 KEGGEVHACEIQDADFYVSS----YSIGD----RTR---AFLKVQDGCDYKCTYCTIPLA 171

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK---CTFSDLLYSLS 255
           RGI  S +L  V+D A K+    + EI L G N+  + GKG  G K    TF +L+  L 
Sbjct: 172 RGISRSDTLQNVLDNASKIAAQDIKEIVLTGVNIGDY-GKGEFGNKKHEHTFLELVQELD 230

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
           +++G+ RLR ++  P  + +  I         +P+ H+P+QSGS++IL  M RR+    Y
Sbjct: 231 KVEGIERLRISSIEPNLLKNETIDVVSKSRTFVPHFHIPLQSGSNKILGLMRRRYQRELY 290

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
              + +I+ V P   I  D IVGFPGETD+DF  T + +  +  +    F YS R  TP 
Sbjct: 291 VDRVAKIKEVMPQACIGVDVIVGFPGETDEDFLETYNFLTGLDISYLHVFTYSERDNTPA 350

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG----- 430
           + M  +V + V+++R   L+    + + +F ++ +  +  VL E   KE G + G     
Sbjct: 351 ATMEGEVPKKVRSKRSKMLRGLSAKMRRAFYESQLNSMRTVLFESENKE-GYIHGFTENY 409

Query: 431 ---RSPWLQSVV 439
              +SPW   +V
Sbjct: 410 VKVKSPWNPELV 421


>gi|15603436|ref|NP_246510.1| hypothetical protein PM1571 [Pasteurella multocida subsp. multocida
           str. Pm70]
 gi|18202814|sp|Q9CKN9|RIMO_PASMU RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|12721964|gb|AAK03655.1| unknown [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 446

 Score =  181 bits (460), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 136/459 (29%), Positives = 221/459 (48%), Gaps = 46/459 (10%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ DS R+     S GY  + S ++ADL+++NTC   + A ++    +G     
Sbjct: 12  SLGCPKNLVDSERILTELRSDGYNIIPSYENADLVIVNTCGFIDSAVQESLEAIGE---- 67

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               ++E G   V+V GC+   E + I    P V  V GP +Y  + +     +  K V 
Sbjct: 68  ---ALEENGK--VIVTGCLGAKE-DRIREVHPKVLEVTGPHSYEAVMQ-----QVHKYVP 116

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
              Y   + +  L +   G        A+L I EGCD  CTFC++P  RG   SRS++QV
Sbjct: 117 KPAY---NPYVNL-VPKQGVKLTPKHYAYLKISEGCDHRCTFCIIPSMRGDLDSRSITQV 172

Query: 211 VDEARKLIDNGVCEITLLGQNVNA---------------WRGKGLDGEKCTFSDLLYSLS 255
           +DEA++L++ GV EI ++ Q+ +A               W G  +   K     L   L 
Sbjct: 173 LDEAKRLVEAGVKEILVVSQDTSAYALDRSKEEQNKTVFWNGMPI---KNNLISLCEQLG 229

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
           ++   VRL Y   +P       + A G +   +PYL +P+Q  S +ILK+M R  +    
Sbjct: 230 KLGVWVRLHYVYPYPHVDQLIPLMAEGKI---LPYLDIPLQHASPKILKAMKRPGSIERT 286

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
            + I + R + PD+ + S FIVGFPGE+++DF+  +D + +    +   FK+SP  G   
Sbjct: 287 LERIKKWREICPDLTLRSTFIVGFPGESEEDFQLLLDFLKEALLDRVGCFKFSPVEGAIA 346

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSP 433
           + M +QV E VK  R     +  +E   +     VG++  VL+++  +E    + +  +P
Sbjct: 347 TEMPDQVPEEVKEARFHRFMQLQQEISAARLQQKVGKVFTVLVDEVDEEGIIARSIADAP 406

Query: 434 WLQSVV-LNSKNH---NIGDIIKVRITDVKISTLYGELV 468
            +  VV +++ N      G  I+V+IT      LY  L+
Sbjct: 407 EIDGVVYIDNPNRVAVKAGQFIEVKITRADAYDLYASLI 445


>gi|209965481|ref|YP_002298396.1| hypothetical protein RC1_2196 [Rhodospirillum centenum SW]
 gi|209958947|gb|ACI99583.1| conserved hypothetical protein [Rhodospirillum centenum SW]
          Length = 458

 Score =  181 bits (460), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 139/442 (31%), Positives = 221/442 (50%), Gaps = 42/442 (9%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V ++GC++N Y+S  M      + + R   +DD  ++++NTC +  +A  +    + R+R
Sbjct: 46  VVTFGCRLNSYESEVM------RAHARTAGLDD--VVIVNTCAVTAEAERQARQAIRRLR 97

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA--RFG 146
                R + G    +VV GC AQ   +        V+ V+G        +L E A   FG
Sbjct: 98  -----RDRPGAK--IVVTGCAAQVNPDGFAAMGE-VDHVLGNDA-----KLTESAWTEFG 144

Query: 147 ----KRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
               +RV V+   SV +    L  + G   R R   AF+ +Q GCD  CTFC++P+ RG 
Sbjct: 145 VGASERVRVNDIMSVRETASHL--IQGMEGRAR---AFVQVQNGCDHRCTFCIIPFGRGN 199

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
             S  + +VV + R L+++G  E+ L G ++ ++ G  L G       +   L+ +  L 
Sbjct: 200 SRSVPMGEVVAQVRTLLESGYREVVLTGVDITSY-GADLPGTPALGQMVRRLLAAVPELP 258

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           RLR ++    +M D L +   + + LMP+LHL +Q+G D +LK M RRHT  +  +  ++
Sbjct: 259 RLRLSSLDAVEMDDDLWRLVAEEERLMPHLHLSLQAGDDMVLKRMKRRHTRDDAIRFCEK 318

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
            R +RPDI   +D I GFP ETD  F  ++ +V++ G      F YS R GTP + M  Q
Sbjct: 319 ARGLRPDIVFGADIIAGFPTETDAMFENSLRIVEECGLTWLHVFPYSARPGTPAAKM-PQ 377

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           V   V+ ER   L+   +     +  A VG+   VL+E+ G      +GR+P    V L+
Sbjct: 378 VPVPVRKERAARLRAAGQVAVDRYLAAQVGRTAGVLVERAG------LGRTPGFAEVRLD 431

Query: 442 SKNHNIGDIIKVRITDVKISTL 463
              H  G +I+ R+T V  + L
Sbjct: 432 G-THAPGSLIRCRLTGVDGTML 452


>gi|104783090|ref|YP_609588.1| ribosomal protein S12 methylthiotransferase [Pseudomonas
           entomophila L48]
 gi|123079105|sp|Q1I6D1|RIMO_PSEE4 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|95112077|emb|CAK16804.1| conserved hypothetical protein [Pseudomonas entomophila L48]
          Length = 443

 Score =  181 bits (460), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 148/471 (31%), Positives = 232/471 (49%), Gaps = 61/471 (12%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  FV S GC   + DS R+      +GYE V + +DAD++V+NTC   + A  +    
Sbjct: 8   PKVGFV-SLGCPKALVDSERILTQLRMEGYEVVPTYEDADVVVVNTCGFIDSAKAESLEV 66

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G         IKE G   V+V GC+   EG  I    P V  V GPQ Y          
Sbjct: 67  IGEA-------IKENGK--VIVTGCMGVEEGS-IRDVHPSVLSVTGPQQY---------- 106

Query: 144 RFGKRVVDTDYSV----EDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
              ++VV+  + V    +D    + +V   G        A+L I EGC+  C+FC++P  
Sbjct: 107 ---EQVVNAVHEVVPPRQDHNPLIDLVPPQGVKLTPRHYAYLKISEGCNHSCSFCIIPSM 163

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTF 247
           RG  +SR + +V+ EA +L+  GV EI ++ Q+ +A           W G+ +   K   
Sbjct: 164 RGKLVSRPVGEVLSEAERLVKAGVKEILVISQDTSAYGVDVKYKTDFWNGRPV---KTRM 220

Query: 248 SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307
            +L  +LS +   VRL Y   +P       + A G    ++PYL +P Q  S ++LKSM 
Sbjct: 221 LELCEALSSLGAWVRLHYVYPYPNVDDVIPLMAAGK---ILPYLDIPFQHASPKVLKSMK 277

Query: 308 RRHTAYEYRQIIDRIRSVR---PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
           R   A+E R +  RI++ R   P++ I S FIVGFPGET++DF+  +D + +    +   
Sbjct: 278 R--PAFEDRTLA-RIKNWREQCPELVIRSTFIVGFPGETEEDFQYLLDWLTEAQLDRVGC 334

Query: 365 FKYSPRLGTPGSNM-LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK 423
           F+YSP  G P +++ L++V ++VK ER        +    +     +G+ IEVLI++  +
Sbjct: 335 FQYSPVEGAPANDLGLDEVPDDVKQERWDRFMAHQQAISAARLQQRIGKEIEVLIDEV-E 393

Query: 424 EKGKLVGRS----PWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468
           E+G  VGRS    P +   V    +H    GD ++ RI D     ++ E +
Sbjct: 394 EQGS-VGRSFFDAPEIDGSVFIDGDHGFKPGDKVRCRIVDADEYDMWAEPI 443


>gi|163859042|ref|YP_001633340.1| ribosomal protein S12 methylthiotransferase [Bordetella petrii DSM
           12804]
 gi|238065294|sp|A9IFP1|RIMO_BORPD RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|163262770|emb|CAP45073.1| conserved hypothetical protein [Bordetella petrii]
          Length = 441

 Score =  181 bits (460), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 144/468 (30%), Positives = 224/468 (47%), Gaps = 55/468 (11%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P    + S GC   + DS R+     ++GY+   S DDAD++V+NTC   + A  +    
Sbjct: 6   PASIAMISLGCPKALVDSERILTQLRTEGYQVTPSYDDADVVVVNTCGFIDSAKAESLEA 65

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRR-SPIVNVVVGPQTYYRLPELLER 142
           +G         I E G   V+V GC+   E   ++R   P V  V GPQ Y ++  +LE 
Sbjct: 66  IGEA-------IAENGK--VIVTGCMGVEES--VIREIHPSVLAVTGPQQYEQV--VLEV 112

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            R      D +  V+       +   G        A+L I EGC+  C+FC++P  RG  
Sbjct: 113 HRAAPPKADHNPYVD------LVPPQGVKLTPRHYAYLKISEGCNHRCSFCIIPSMRGDL 166

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLL 251
           +SR +  V+ EA +L+  GV E+ ++ Q+ +A           W G+ +   K   ++L 
Sbjct: 167 VSRPVGDVLSEAERLVKAGVKELLVISQDTSAYGVDLKYRSGFWNGRPI---KTRMTELC 223

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
            +LSE+    RL Y   +P       + A G +   +PYL +P Q  S RILK+M R   
Sbjct: 224 AALSELGVWTRLHYVYPYPHVDEVIPLMAQGKV---LPYLDIPFQHASPRILKAMKR--P 278

Query: 312 AYEYRQI--IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369
           A+E + +  I R R   PD+ + S FIVGFPGET+ DF+  +D + +    +   F+YSP
Sbjct: 279 AFEDKTLARIKRWREECPDLTLRSTFIVGFPGETEADFQYLLDWMSEAQLDRVGCFQYSP 338

Query: 370 RLGTPGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG 426
             G P + +   V + VK E   R +  Q+ +   ++      VG+ I+VLI++   +  
Sbjct: 339 VNGAPANELDGAVPDEVKQERWDRFMAHQQAISAARLQTR---VGREIDVLIDEVNADGA 395

Query: 427 KLVGRS----PWLQSVVL--NSKNHNIGDIIKVRITDVKISTLYGELV 468
             VGRS    P +   V   N+     GD+ +VRIT      L+G+ V
Sbjct: 396 --VGRSSADAPEIDGCVYVGNAATLRPGDMARVRITAADEYDLHGDAV 441


>gi|23013648|ref|ZP_00053519.1| COG0621: 2-methylthioadenine synthetase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 448

 Score =  181 bits (460), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 136/459 (29%), Positives = 223/459 (48%), Gaps = 49/459 (10%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           + S GC   + DS R+     ++GY+   S D AD++++NTC   + A  +    +G   
Sbjct: 10  IVSLGCSKALVDSERILTKLRAEGYDISGSYDGADVVIVNTCGFLDSARAESLEAIGEA- 68

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
                 + E G   V+V GC+   E + I    P V  V GP  Y  + E +  A     
Sbjct: 69  ------LAENGK--VIVTGCMGGDE-KAIRGAHPSVLAVSGPHQYQAVVEAVHAAI---- 115

Query: 149 VVDTDYSVEDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
                  + D   +LS+V   G +      A+L I EGC+  C+FC++P  RG  +SRS 
Sbjct: 116 -----PPLHDP--KLSLVPPEGLHLTPHHYAYLKISEGCNNSCSFCIIPDIRGPLVSRSA 168

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYSLSE 256
           + V+ EA +L ++GV E+ ++ Q+ +A           WRG+ +   +   +DL  +L E
Sbjct: 169 ADVLGEAERLAESGVRELLVISQDTSAYGLDLRHAESSWRGRPV---RAHLTDLARALGE 225

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           +   +R+ Y   +P       + A G +   +PYL +P Q  S  +LK+M R        
Sbjct: 226 LGIWIRMHYVYPYPHVDEIIPLMAEGKI---LPYLDIPFQHASPNVLKAMRR---PANQE 279

Query: 317 QIIDRIRSVR---PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
           +++ RIRS R   PD+ + S FIVGFPGETDDDF + ++ +D+    +   FKY    G 
Sbjct: 280 KVLGRIRSWRETCPDLTLRSTFIVGFPGETDDDFESLLEWMDEAQLDRVGCFKYEDVKGA 339

Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGR 431
           P +   +QVDE+VK ER     +  R+       A  G  +EV+I++  +E   G+    
Sbjct: 340 PSNAFADQVDEDVKEERHQRFMEAARQIADERGAAKEGTRVEVIIDEVDEEGAIGRSKAD 399

Query: 432 SPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468
           SP +   V  +   ++  GD++ V +   +   L+G++V
Sbjct: 400 SPEVDGAVFMNGETDLEPGDLVIVEVEAAEDYDLWGDVV 438


>gi|254283413|ref|ZP_04958381.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [gamma
           proteobacterium NOR51-B]
 gi|219679616|gb|EED35965.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [gamma
           proteobacterium NOR51-B]
          Length = 448

 Score =  181 bits (460), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 137/424 (32%), Positives = 203/424 (47%), Gaps = 43/424 (10%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           PQR    S GC   + DS R+       GYE   S +DA ++++NTC   + A  +    
Sbjct: 13  PQRVGFVSLGCPKALVDSERILTQLRLDGYEVTPSYEDAGVVIVNTCGFIDSAKAESLEA 72

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQ-AEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
           +G         I+E G +LV   GC+ + A+ E IL   P V  + GP  Y    E+L  
Sbjct: 73  IGEA-------IEENGRVLVT--GCMGKGADAEAILEAHPKVLGITGPAAYE---EVLSE 120

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            R   RV+   +  +   +   I   G        A+L I EGC+  C FCV+P  RG  
Sbjct: 121 VR---RVLPNKHKPDPTIDL--IPAQGVKLTPRHYAYLKISEGCNHRCRFCVIPSMRGDL 175

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLL 251
           +SR + +V+ EA  L+  GV EI ++ Q+ +A           W G+ L   K     L 
Sbjct: 176 VSRPIGEVMREAEGLVRAGVREILVISQDTSAYGVDLRYRTDFWDGRPL---KTNLETLA 232

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
            +L E+   +RL Y   +P    D +I    D  +L PYL +P+Q GS  +L+ M R   
Sbjct: 233 ATLGELGVWIRLHYVYPYPH--VDKVIPLMADGKIL-PYLDIPLQHGSPAVLERMKRPAA 289

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
           A +    I R R V PDI + S FIVG+PGETD +F+  +D ++     +   FKYSP  
Sbjct: 290 AEKTLDRIHRWREVCPDITLRSTFIVGYPGETDAEFQELLDFMESAQLDRVGCFKYSPVA 349

Query: 372 GTPGSNMLEQVDENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL 428
           G   +++   V E VK ER    + LQ+++   ++      VG  I+VLI++   E    
Sbjct: 350 GAAANDLPNPVPEAVKEERWQIFMALQQRISADKLQRK---VGSTIDVLIDQVDSEGA-- 404

Query: 429 VGRS 432
           +GRS
Sbjct: 405 IGRS 408


>gi|307246560|ref|ZP_07528632.1| Ribosomal protein S12 methylthiotransferase rimO [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|307255545|ref|ZP_07537351.1| Ribosomal protein S12 methylthiotransferase rimO [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|307259996|ref|ZP_07541709.1| Ribosomal protein S12 methylthiotransferase rimO [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|306852623|gb|EFM84856.1| Ribosomal protein S12 methylthiotransferase rimO [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|306861587|gb|EFM93575.1| Ribosomal protein S12 methylthiotransferase rimO [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|306866024|gb|EFM97899.1| Ribosomal protein S12 methylthiotransferase rimO [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
          Length = 443

 Score =  181 bits (460), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 131/459 (28%), Positives = 225/459 (49%), Gaps = 52/459 (11%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ DS R+     + GY  + S ++ADL+++NTC   + A ++    +G     
Sbjct: 11  SLGCPKNLVDSERILTELRTDGYNIIPSYENADLVIVNTCGFIDSAVQESLEAIGE---- 66

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               ++E G   V+V GC+   E + I    P V  + GP +Y  +  +    ++  R  
Sbjct: 67  ---ALEENGK--VIVTGCLGAKENQ-IREVHPKVLEITGPHSYEAV--MKHVHKYVPRPE 118

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
              Y+     + + +    Y       A+L I EGCD  CTFC++P  RG   SR + QV
Sbjct: 119 RNIYTSLVPAQGVKLTPKHY-------AYLKISEGCDHRCTFCIIPSMRGDLDSRPIVQV 171

Query: 211 VDEARKLIDNGVCEITLLGQNVNA---------------WRGKGLDGEKCTFSDLLYSLS 255
           +DEA++L D+GV E+ ++ Q+ +A               W G  +     T  + L +L 
Sbjct: 172 LDEAKRLADSGVKELLIVSQDTSAYALDQSKENQNKTVFWNGVPIKNNLITLCEQLGTLG 231

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
                VRL Y   +P       + A G +   +PYL +P+Q  S ++LK+M R       
Sbjct: 232 ---IWVRLHYVYPYPHVDDLIPLMAQGKI---LPYLDIPLQHASPKVLKAMKRPGAIDRT 285

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
            + I + R + P++ + S FIVGFPGET++DF+  +D +++    +   FK+SP  G   
Sbjct: 286 LERIKKWREICPELTLRSTFIVGFPGETEEDFQMLLDFLEEAQLDRVGCFKFSPVEGAVA 345

Query: 376 SNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVG 430
           + M +QV E+VK E   R + +Q+++   ++      VG+ + V+I++  +E   G+ + 
Sbjct: 346 TEMADQVPEDVKGERFHRFMQVQQRISAARLQQK---VGKTLAVIIDEIDEEGIIGRSMA 402

Query: 431 RSPWLQSVV----LNSKNHNIGDIIKVRITDVKISTLYG 465
            +P +  VV    L+ +   +G +I V IT+     L+G
Sbjct: 403 DAPEIDGVVYVDNLSEQEVKVGQVISVSITNADEYDLWG 441


>gi|192291328|ref|YP_001991933.1| ribosomal protein S12 methylthiotransferase [Rhodopseudomonas
           palustris TIE-1]
 gi|238066579|sp|B3QIV5|RIMO_RHOPT RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|192285077|gb|ACF01458.1| MiaB-like tRNA modifying enzyme YliG [Rhodopseudomonas palustris
           TIE-1]
          Length = 441

 Score =  181 bits (460), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 141/466 (30%), Positives = 222/466 (47%), Gaps = 48/466 (10%)

Query: 18  VDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA 77
           + Q   P+  FV S GC   + DS R+     ++GYE     D ADL+++NTC   + A 
Sbjct: 1   MQQATAPKISFV-SLGCPKALVDSERIITRLRAEGYELARKHDGADLVIVNTCGFLDSAK 59

Query: 78  EKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLP 137
           ++  + +G                 V+V GC+  AE E+I    P V  + GPQ Y  + 
Sbjct: 60  QESLAAIGEAMATNGK---------VIVTGCMG-AEPEQIEAAYPGVLSITGPQQYESVL 109

Query: 138 ELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197
           + + RAR        D  V  +  RL+             A+L I EGC+  C+FC++P 
Sbjct: 110 DAVHRARPALHNPHLDL-VPPQGVRLTPRH---------YAYLKISEGCNNRCSFCIIPK 159

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCT 246
            RG  +SR    V+ EA KL+  GV E+ ++ Q+ +A           W+ + +   +  
Sbjct: 160 LRGDLVSRPAGDVLREAEKLVAAGVKELLVISQDTSAYGVDVKYAESPWKDRAV---RAK 216

Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306
           F DL   L E+   VRL Y   +P    D +I    D  VL PYL +P Q  S  +LK M
Sbjct: 217 FLDLASELGELGAWVRLHYVYPYPH--VDEVIGLMADGKVL-PYLDIPFQHASPDVLKLM 273

Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
            R     +    I R R   PD+A+ S FIVGFPGET+ DF   ++ +D+    +  +FK
Sbjct: 274 KRPAAQDKTLDRIKRWREQCPDLALRSTFIVGFPGETERDFEFLLEWLDEAEIDRLGAFK 333

Query: 367 YSPRLGTPGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK 423
           Y P  G P + + +Q+ + VK E   RL+  Q+ +  +++      VG   +V+I++ G 
Sbjct: 334 YEPVAGAPSNALPDQIADEVKQERWNRLMARQQAISARRLKRK---VGTRQQVIIDEIGP 390

Query: 424 --EKGKLVGRSPWLQ-SVVLNSKNH-NIGDIIKVRITDVKISTLYG 465
              KG+    +P +  +V L+S+    +G+I+  +I       L+G
Sbjct: 391 TVTKGRSKADAPEIDGAVYLSSRRPLRVGEIVTAKIDRADAYDLHG 436


>gi|332290240|ref|YP_004421092.1| hypothetical protein UMN179_02182 [Gallibacterium anatis UMN179]
 gi|330433136|gb|AEC18195.1| conserved hypothetical protein [Gallibacterium anatis UMN179]
          Length = 445

 Score =  181 bits (460), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 132/468 (28%), Positives = 229/468 (48%), Gaps = 65/468 (13%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ DS R+     ++GY  V S D+ADL+++NTC   + A ++    +G     
Sbjct: 12  SLGCPKNLVDSERILTELRAEGYNIVPSYDNADLVIVNTCGFIDSAVQESLEAIGE---- 67

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               ++E G   V+V GC+   E + I    P V  + GP +Y  +  +    ++  +  
Sbjct: 68  ---ALEENGK--VIVTGCLGAKENQ-IREVHPKVLEITGPHSYEAV--MTHVHKYAPKPE 119

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVT------AFLTIQEGCDKFCTFCVVPYTRGIEIS 204
              Y        L++V      K+GV       A++ I EGCD  CTFC++P  RG   S
Sbjct: 120 YNPY--------LNVVP-----KQGVKLTPKHYAYVKISEGCDHRCTFCIIPSMRGDLDS 166

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNA----------------WRGKGLDGEKCTFS 248
           R ++ ++DEA++L+D GV E+ ++ Q+ +A                W G  +  +  T  
Sbjct: 167 RPINTILDEAKRLVDAGVKELLIVSQDTSAYALDKNQKEQKSKTVFWNGMPIKNDLITLC 226

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
           + L +L      VRL Y   +P       + A G +   +PYL +P+Q  S +ILK+M R
Sbjct: 227 EQLGTLG---VWVRLHYVYPYPHVDKLIPLMAQGKI---LPYLDIPLQHASPKILKAMKR 280

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
             +     + I + R + P++ + S FIVGFPGET++DF+  +D + +    +   FK+S
Sbjct: 281 PGSIDRTLERIKQWREICPELTLRSTFIVGFPGETEEDFQMLLDFIQEAQLDRVGCFKFS 340

Query: 369 PRLGTPGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK 425
           P  G   + M EQV E VK E   R + LQ+++  Q++      +G+ + V+I++  +E 
Sbjct: 341 PVEGAVATEMAEQVPEEVKEERFHRFMQLQQQISAQRLQQK---IGKTLPVMIDEIDEEG 397

Query: 426 --GKLVGRSPWLQSVV----LNSKNHNIGDIIKVRITDVKISTLYGEL 467
             G+ +  +P +  VV    ++ +   IG+++   I +     L+  +
Sbjct: 398 IIGRSMADAPEIDGVVYIDNISEQQVKIGEVVMATIHNADEYDLWATI 445


>gi|311747718|ref|ZP_07721503.1| 2-methylthioadenine synthetase [Algoriphagus sp. PR1]
 gi|126575706|gb|EAZ80016.1| 2-methylthioadenine synthetase [Algoriphagus sp. PR1]
          Length = 439

 Score =  181 bits (460), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 115/402 (28%), Positives = 207/402 (51%), Gaps = 18/402 (4%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N  ++  +   F  +GY +V+  ++ D+ ++NTC + E A +K    +   + +
Sbjct: 8   TLGCKLNFSETSTISRQFEDKGYLKVDFQENPDIFIINTCSVTENADKKCKKIVKEAKKI 67

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
                    +  V + GC AQ + +EI    P V+ V+G    +RL ELL+   F K   
Sbjct: 68  -------SPNSYVTIIGCYAQLKPKEI-SEIPDVDAVLGAAEKFRLIELLDD--FAK--A 115

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
                +  + +  +  +  Y+       FL +Q+GC+  C FC +P  RG   S ++  V
Sbjct: 116 QETKVLASEIQEATTFNNAYSINDRTRTFLKVQDGCNYGCAFCTIPLARGKSRSNTIESV 175

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGL-DGEKCT-FSDLLYSLSEIKGLVRLRYTTS 268
           ++ AR++    V EI L G N+  +   G+ DG++   F+DL+++L +++G+ R R ++ 
Sbjct: 176 LESAREIAATDVKEIVLTGVNIGDF---GIVDGKRNERFADLVFALDDVEGINRFRISSI 232

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
            P  +++ +I         +P+ H+P+QSGS+ IL+ M RR+    Y   + +I+S+ P 
Sbjct: 233 EPNLLTNEIISFAAQSKRFVPHFHVPLQSGSNTILRKMGRRYLRELYVDRVSKIKSLMPH 292

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
             I  D IVGFPGETD+ F  T + ++++  +    F YS R  T  + M   V + V+ 
Sbjct: 293 ACIGVDVIVGFPGETDELFLETYNFLNELDISYLHVFTYSERANTRATEMEGVVPKKVRN 352

Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG 430
           ER   L+    +++  F +  +G+   VL E+   E GK+ G
Sbjct: 353 ERSKMLRILSEKKRRKFYEENLGKTFTVLFEE-DIENGKMHG 393


>gi|116749020|ref|YP_845707.1| MiaB-like tRNA modifying enzyme YliG [Syntrophobacter fumaroxidans
           MPOB]
 gi|238066613|sp|A0LIM0|RIMO_SYNFM RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|116698084|gb|ABK17272.1| MiaB-like tRNA modifying enzyme YliG [Syntrophobacter fumaroxidans
           MPOB]
          Length = 444

 Score =  181 bits (460), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 141/456 (30%), Positives = 222/456 (48%), Gaps = 42/456 (9%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ DS  M       GYE    +  A LI++NTC   E A  +    + ++   
Sbjct: 10  SLGCAKNLVDSESMVSQLIELGYEMTPEVSQAALILVNTCGFLESAVRESIDTVLQLAGY 69

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
           K S    G    +VVAGC+ Q  G+++L   P V++ +G    + L   +     G    
Sbjct: 70  KAS----GSCEKLVVAGCMVQRYGKKLLGLLPEVDLFLGTSHCHALKSFIRDHEAGSS-- 123

Query: 151 DTDYSVEDKFERLSI-----VDGGYNR---KRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
                     ERL I     VD G +R   +   +A++ I EGC   C FC++P  RG  
Sbjct: 124 ----------ERLRIAFPDHVDNGADRHLVEGRSSAYVKIAEGCGNRCAFCLIPRLRGPY 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLV 261
            SR    ++ EA +L+  G  E+ ++ Q+  A+   G D GE+     LL SL EI+ L 
Sbjct: 174 RSRRAVDILREAHRLVACGAKELNIVAQDTTAF---GSDRGEEHALVSLLESLEEIEKLE 230

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
            +R   ++P  ++  LI+       ++PYL +P+Q    RIL SM R  T  E  +I+D 
Sbjct: 231 WVRLLYAYPDRITPELIRTMSQSRKVVPYLDIPLQHCVPRILASMGRSGTDPE--RIVDA 288

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           IRS  P +A+ +  IVGFPGET+ DF+A    V+  G+     F +SP  GT  + M ++
Sbjct: 289 IRSGIPGVALRTSLIVGFPGETEADFQALTAFVECTGFEHLGVFAFSPEPGTRAARMPDR 348

Query: 382 VDENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-----KGKLVGRSP 433
           V  +V  ER   LL LQ+ +  +++   ++ VG+++ VL+E    E      G+L  ++P
Sbjct: 349 VPPDVAQERRKVLLELQRGISRRRL---ESLVGRVLPVLVEGFHPETDLLLTGRLAVQAP 405

Query: 434 WLQSVVLNSKN-HNIGDIIKVRITDVKISTLYGELV 468
                VL +      G+I++ R+T      +  EL+
Sbjct: 406 EADGTVLITDGIGTPGEIMRCRVTAAHDYDVEAELL 441


>gi|34763184|ref|ZP_00144150.1| Fe-S OXIDOREDUCTASE (1.8.-.-) [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
 gi|27887153|gb|EAA24258.1| Fe-S OXIDOREDUCTASE (1.8.-.-) [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
          Length = 435

 Score =  181 bits (460), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 131/449 (29%), Positives = 225/449 (50%), Gaps = 40/449 (8%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  +++    +GYE V   D +D+ ++N+C +   A  K  + L R + +
Sbjct: 11  TLGCKVNQYETESIKNQLIKRGYEEVPFEDKSDIYIINSCTVTSIADRKTRNMLRRAKKI 70

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILR------------RSPIVNVVVGPQTYYRLPE 138
                    D  V+V GC AQ    EIL             +S IVN V   +       
Sbjct: 71  -------NPDAKVIVTGCYAQTNSREILEIEDVDFVIDNKNKSNIVNFVGAIEDIS---- 119

Query: 139 LLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
             ER + G    + +Y  E +F  L         +    A++ IQ+GC+ FC++C +P+ 
Sbjct: 120 -FEREKNGNIFQEKEYQ-EYEFATL---------REMTRAYVKIQDGCNHFCSYCKIPFA 168

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258
           RG   SR    ++ E  KL+++G  E+ L+G +++A+ GK    EK  F  LL  + +IK
Sbjct: 169 RGKSRSRKKENILKEIEKLVEDGFKEVILIGIDLSAY-GKDF-KEKDNFESLLEDILKIK 226

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
            L R+R  + +P  ++D  I+   + + LMP+LH+ +QS  D +LK+M R + +   R+ 
Sbjct: 227 DLKRVRIGSVYPDKITDRFIELFKN-ENLMPHLHISLQSCDDTVLKNMRRNYGSSLIRES 285

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           + +++S   ++  ++D IVGFP E +  F+ T D++ +I ++    F+YS R GT  SNM
Sbjct: 286 LLKLKSKVKNMEFTADVIVGFPKEDETMFQNTYDVIKEIEFSGLHIFQYSDREGTIASNM 345

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSV 438
             +VD   K +R   L    +E  ++     + + +EVL+E+   + G+  G S     V
Sbjct: 346 DGKVDAKTKKQRADRLDNLKQEMILNSRKKYLEKNLEVLVEEE--KDGEYFGYSQNYLRV 403

Query: 439 VLNSKNHN-IGDIIKVRITDVKISTLYGE 466
              S   N +  +I V+I  VK   L  E
Sbjct: 404 KFRSDEKNLVNKLINVKIKCVKNDILIAE 432


>gi|188577734|ref|YP_001914663.1| hypothetical protein PXO_01247 [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|238055316|sp|B2SWC0|RIMO_XANOP RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|188522186|gb|ACD60131.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae
           PXO99A]
          Length = 460

 Score =  181 bits (460), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 142/461 (30%), Positives = 216/461 (46%), Gaps = 44/461 (9%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           VP+  FV S GC   + DS R+      +GY+ V S D AD++V+NTC   + A  +   
Sbjct: 8   VPKVGFV-SLGCPKALVDSERILTQLRVEGYDIVPSYDAADVVVVNTCGFIDSAVTESLD 66

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +G   N             V+V GC+ +   E+I    P V  V GPQ Y  + E +  
Sbjct: 67  AIGEAMNANGK---------VIVTGCLGK-RPEQIREAYPQVLAVSGPQDYQSVMEAVHA 116

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           A   +          D F  L + D G        A+L I EGC+  C+FC++P  RG  
Sbjct: 117 ALPPRH---------DPFVDL-VPDYGIKLTPRHYAYLKISEGCNHRCSFCIIPSMRGDL 166

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS--------- 253
           +SR + +V+ EA +L+  GV E+ ++ Q+ +A+ G  L   +  + D +Y          
Sbjct: 167 VSRPVDEVLCEAERLVRGGVKELLVVSQDTSAY-GVDLKYAERPWRDRMYQTRMKALCEG 225

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
           LSE+    RL Y   +P       + A G L   +PYL +P Q  S RILK M R     
Sbjct: 226 LSELGVWTRLHYVYPYPHVDDVLPLMAEGKL---LPYLDIPFQHASPRILKLMKRPGAVE 282

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
           +  Q + R +++ P+I + S FIVGFPGETD +F + +D +D+    +  +F YSP  G 
Sbjct: 283 KTLQRVQRWKAMCPEITVRSTFIVGFPGETDAEFESLLDFLDQAQLDRVGAFAYSPVDGA 342

Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS- 432
             + + + V E VK ERL     K  E      +A +G + + L++    E    V RS 
Sbjct: 343 SANALPDPVPEEVKQERLARFMAKQAEISALRLEAKIGSVQQCLVDL--IEDDIAVARSR 400

Query: 433 ---PWLQSVVLNSKNH----NIGDIIKVRITDVKISTLYGE 466
              P +  +V           +GD++ V ITD     L+G+
Sbjct: 401 ADAPEIDGLVHIQNGGELGLKVGDLVDVEITDSDEHDLFGD 441


>gi|27367631|ref|NP_763158.1| ribosomal protein S12 methylthiotransferase [Vibrio vulnificus
           CMCP6]
 gi|81446986|sp|Q8D4N8|RIMO_VIBVU RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|27359203|gb|AAO08148.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Vibrio vulnificus
           CMCP6]
          Length = 469

 Score =  181 bits (460), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 135/453 (29%), Positives = 220/453 (48%), Gaps = 40/453 (8%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ DS R+     ++GYE VNS  D+D++++NTC   + A ++    +G     
Sbjct: 40  SLGCPKNLVDSERILTQLRTEGYEIVNSYHDSDVVIVNTCGFIDSAVQESLDTIGEA--- 96

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               +KE G   V+V GC+   E +EI    P V  + GP  Y  + E + +  F  +  
Sbjct: 97  ----LKENGK--VIVTGCLGARE-DEIREVHPGVLGITGPHAYENVLEHVHQ--FAPK-- 145

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
                  + F  L + D G        A+L I EGC+  CTFC++P  RG  +SR + ++
Sbjct: 146 ----PEHNPFTSL-VPDHGVKLTPKHYAYLKISEGCNHRCTFCIIPSMRGDLVSRPVGEI 200

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT-FSDLLYSLSEIKGL--------- 260
           + EA +L + GV E+ ++ Q+ +A+   G+D +    F++       IK L         
Sbjct: 201 LSEAERLKNAGVKELLVISQDTSAY---GVDSKHSLGFANGSPVRQNIKALSEELGKMGI 257

Query: 261 -VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
            VRL Y   +P       + A G +   +PYL +P Q  S  +LK+M R   A      I
Sbjct: 258 WVRLHYVYPYPHVDDLIPLMAEGKI---LPYLDIPFQHASPNVLKAMKRPGRAERTLDQI 314

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            + R + P++ I S FIVGFPGETD+DF   ++ + +    +   FKYSP  G   +++ 
Sbjct: 315 KKWREICPELVIRSTFIVGFPGETDEDFEMLLEWLKEAQLDRVGCFKYSPVEGAAANDID 374

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPWLQS 437
           +Q+ E VK ER  C     +E   +     +G  ++V+I++  +E   G+    +P +  
Sbjct: 375 DQISEEVKQERFECFMLVQQEISAAKLQKRIGSTMKVIIDEVDEEGAIGRTYADAPEIDG 434

Query: 438 VV-LNSKNH-NIGDIIKVRITDVKISTLYGELV 468
           +V LN +     G+++ V I       L+G LV
Sbjct: 435 LVYLNGETSLKAGELVDVLIEHADEYDLWGSLV 467


>gi|55981144|ref|YP_144441.1| ribosomal protein S12 methylthiotransferase [Thermus thermophilus
           HB8]
 gi|81364108|sp|Q5SJ39|RIMO_THET8 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|55772557|dbj|BAD70998.1| conserved hypothetical protein [Thermus thermophilus HB8]
          Length = 434

 Score =  181 bits (460), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 141/453 (31%), Positives = 224/453 (49%), Gaps = 47/453 (10%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC   + DS ++     + GYE   S ++A+L+++NTC    +A E+    +G     
Sbjct: 8   SLGCPKALVDSEQILSRLKALGYETSPSYEEAELVIVNTCGFINEAVEESLEVIGEA--- 64

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               +KE G   VVV GC+  A  E+I  R P V  + GP    R+ E ++      R  
Sbjct: 65  ----LKENGK--VVVTGCLG-ARPEKIRERHPQVLAITGPGEVERVLEAVQVVLPAPR-- 115

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
                  D F  L ++           A++ + EGCD  C+FC++P  RG   SR  + V
Sbjct: 116 -------DPF--LDLIPPQVKLTPRHYAYVKLSEGCDHRCSFCIIPKLRGRLRSRDAADV 166

Query: 211 VDEARKLIDNGVCEITLLGQNVNAW-----RGKGLDGEK---CTFSDLLYSLSEIKGLVR 262
           + EA +L+  G  E+ L+ Q+++A+       + L G++       DLL  ++E+   +R
Sbjct: 167 LAEAARLVATGTKELLLVAQDLSAYGVDLGHRESLWGDRPVRAELKDLLAHMAELGAWIR 226

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE-YRQIIDR 321
           L Y   +P       + A G +   +PYL +P+Q  S RIL+ M RR   YE + + +  
Sbjct: 227 LHYVYPYPHVKDLLPLMAEGKV---LPYLDVPLQHASPRILRLM-RRPGGYESHLKALKA 282

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
            R V P++A+ S FIVGFPGET++DF+  +D +++    +   F YSP  G   + + + 
Sbjct: 283 WREVVPELALRSTFIVGFPGETEEDFQILLDFLEEAELDRVGVFAYSPVEGAEANRLPDP 342

Query: 382 VDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPW 434
           V E VK E   RLL LQ ++  ++   N   VG+ +EVL+++   E G  VGR    SP 
Sbjct: 343 VPEEVKEERKARLLELQARVSLRK---NQRFVGKTLEVLVDEL-PEPGLAVGRTYRDSPG 398

Query: 435 LQSVVLNSKNHN--IGDIIKVRITDVKISTLYG 465
           +  VV    +    +G+ I VRI       L+G
Sbjct: 399 IDGVVYVETDGTVRVGERIPVRILRADTYDLHG 431


>gi|169831003|ref|YP_001716985.1| MiaB-like tRNA modifying protein YliG [Candidatus Desulforudis
           audaxviator MP104C]
 gi|238065333|sp|B1I310|RIMO_DESAP RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|169637847|gb|ACA59353.1| MiaB-like tRNA modifying enzyme YliG [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 450

 Score =  181 bits (460), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 141/437 (32%), Positives = 219/437 (50%), Gaps = 17/437 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC-HIREKAAEKVYSF 83
            R  + S GC  N  D   M  +    GY+ + +  +AD+I++NTC  I++   E + + 
Sbjct: 10  SRIALVSLGCDKNRVDGEVMLGLLERAGYQ-ITAELEADIILVNTCAFIQDAKQESIEAI 68

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           L   R   N R +     +++  GC+AQ   +E+LR  P ++ VVG     R+ +++ RA
Sbjct: 69  LETARYRGNGRCR-----VLLATGCLAQRYPDELLRDIPELDGVVGTGEVGRVVDIVRRA 123

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             G+RV +         E L  V  G       TA+L I EGCD  C +CV+P  RG   
Sbjct: 124 ATGERVREVGPPGFLGREVLPRVPSGSP----FTAYLKISEGCDNRCLYCVIPQLRGPYR 179

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR  S +V EAR L   G  EI L+ Q+   + G  L  E+ + +DL+  L+ ++G+  +
Sbjct: 180 SREASVLVREARALAARGAREIVLVAQDTTRY-GSDLK-ERTSLTDLVSRLAALEGVAWI 237

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R    +P  ++  L++       L  YL +P+Q  SDR+L+ M R   +Y+ R++I  +R
Sbjct: 238 RLLYCYPSGITFELVELMAREPRLCRYLDIPLQHASDRVLRRMGRSTMSYDLRKLILFLR 297

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           S  P + I S F+VGFPGET+ DF   +  +  +   +A  F YS   GTP + M +QV 
Sbjct: 298 SAIPGLTIRSTFMVGFPGETEADFEELLGFLKAMKLDRAGFFAYSREEGTPAARMPDQVP 357

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPWLQSVVLN 441
             VK ERL       RE   + N A VG  + VL+E    E+  G+    +P +   V  
Sbjct: 358 PEVKRERLERAAAVQREVSRALNRARVGSEVTVLVEGRKGEQYYGRSEADAPDIDGRVFL 417

Query: 442 SKNHNI--GDIIKVRIT 456
           S   ++  G  ++ RIT
Sbjct: 418 SAASDLEPGTFVRARIT 434


>gi|165977072|ref|YP_001652665.1| hypothetical protein APJL_1669 [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|303250798|ref|ZP_07336992.1| hypothetical protein APP6_1924 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|238065278|sp|B0BRW2|RIMO_ACTPJ RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|165877173|gb|ABY70221.1| hypothetical protein APJL_1669 [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|302650311|gb|EFL80473.1| hypothetical protein APP6_1924 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
          Length = 443

 Score =  181 bits (460), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 131/459 (28%), Positives = 225/459 (49%), Gaps = 52/459 (11%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ DS R+     + GY  + S ++ADL+++NTC   + A ++    +G     
Sbjct: 11  SLGCPKNLVDSERILTELRTDGYNIIPSYENADLVIVNTCGFIDSAVQESLEAIGE---- 66

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               ++E G   V+V GC+   E + I    P V  + GP +Y  +  +    ++  R  
Sbjct: 67  ---ALEENGK--VIVTGCLGAKENQ-IREVHPKVLEITGPHSYEAV--MKHVHKYVPRPE 118

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
              Y+     + + +    Y       A+L I EGCD  CTFC++P  RG   SR + QV
Sbjct: 119 RNIYTSLVPAQGVKLTPKHY-------AYLKISEGCDHRCTFCIIPSMRGDLDSRPIVQV 171

Query: 211 VDEARKLIDNGVCEITLLGQNVNA---------------WRGKGLDGEKCTFSDLLYSLS 255
           +DEA++L D+GV E+ ++ Q+ +A               W G  +     T  + L +L 
Sbjct: 172 LDEAKRLADSGVKELLIVSQDTSAYALDQSKENQNKTVFWNGVPIKNNLITLCEQLGTLG 231

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
                VRL Y   +P       + A G +   +PYL +P+Q  S ++LK+M R       
Sbjct: 232 ---IWVRLHYVYPYPHVDDLIPLMAQGKI---LPYLDIPLQHASPKVLKAMKRPGAIDRT 285

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
            + I + R + P++ + S FIVGFPGET++DF+  +D +++    +   FK+SP  G   
Sbjct: 286 LERIKKWREICPELTLRSTFIVGFPGETEEDFQMLLDFLEEAQLDRVGCFKFSPVEGAVA 345

Query: 376 SNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVG 430
           + M +QV E+VK E   R + +Q+++   ++      VG+ + V+I++  +E   G+ + 
Sbjct: 346 TEMADQVSEDVKEERFHRFMQVQQRISAARLQQK---VGKTLAVIIDEIDEEGIIGRSMA 402

Query: 431 RSPWLQSVV----LNSKNHNIGDIIKVRITDVKISTLYG 465
            +P +  VV    L+ +   +G +I V IT+     L+G
Sbjct: 403 DAPEIDGVVYVDNLSEQEVKVGQVISVSITNADEYDLWG 441


>gi|306819660|ref|ZP_07453323.1| MiaB family RNA modification enzyme [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
 gi|304552305|gb|EFM40233.1| MiaB family RNA modification enzyme [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
          Length = 438

 Score =  181 bits (460), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 133/451 (29%), Positives = 236/451 (52%), Gaps = 42/451 (9%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +++ ++S GC  N+ D+  M  +    GYE  + +DDAD+ ++NTC   E A E+    +
Sbjct: 3   KKYVLESLGCSKNLVDAEEMVYILNENGYEMTDDIDDADVAIVNTCGFIESAKEESIDTI 62

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             I + K   +K      ++V GC+ Q   +++  + P ++  +G  +Y  +  +L+   
Sbjct: 63  LNIASHKQKNLKH-----LIVTGCLVQRYYKDLKEQIPEIDAFLGTTSYNTILNVLQGLS 117

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT----AFLTIQEGCDKFCTFCVVPYTRG 200
            GK         ++     +     +N+K+ +T    A++ I EGCD  CT+C++P  RG
Sbjct: 118 IGK---------DNSLILPANTKLDHNKKKILTDSYYAYIKIAEGCDNSCTYCIIPKLRG 168

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD--GEKCTFSDLLYSLSEIK 258
             +SR + ++V+EA++L    V EI L+ Q+ + +   GLD  GEK    +LL  LS+I+
Sbjct: 169 RYVSRPMEEIVEEAKRLASQNVKEIVLIAQDTSKY---GLDIYGEK-KLPNLLRELSKIE 224

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           G+  +R+  ++P D++D L++   + D +  Y  +P+Q  S+RILK MNR     E    
Sbjct: 225 GIRWIRFLYTYPEDITDELVQEVKNNDKVCSYFDIPIQHASNRILKLMNRSTDRQEISDK 284

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           I+ IRS   D  I +  I GFP E+ +D     D V ++ + +   F YS   GT   NM
Sbjct: 285 INLIRSNIKDAIIRTTLITGFPTESQEDIDELADFVRQMKFDKLGVFPYSREEGTKAGNM 344

Query: 379 LEQVDENVK---AERLLCLQKKL-REQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPW 434
             Q++++VK   AE ++ LQ+++ RE+  S+       I++ + E +      +V RS +
Sbjct: 345 DGQIEQDVKNQRAEMIMRLQQEIVREKNESYVGRPFSTIVDEVYEDY------VVARS-Y 397

Query: 435 LQSVVLNS-------KNHNIGDIIKVRITDV 458
           +  + +++         H  GD I+V+ITDV
Sbjct: 398 MDVIEVDTVIYVNTETTHEKGDFIEVKITDV 428


>gi|256157741|ref|ZP_05455659.1| MiaB-like tRNA modifying enzyme YliG [Brucella ceti M490/95/1]
 gi|256253289|ref|ZP_05458825.1| MiaB-like tRNA modifying enzyme YliG [Brucella ceti B1/94]
 gi|261220402|ref|ZP_05934683.1| conserved hypothetical protein [Brucella ceti B1/94]
 gi|265996247|ref|ZP_06108804.1| conserved hypothetical protein [Brucella ceti M490/95/1]
 gi|260918986|gb|EEX85639.1| conserved hypothetical protein [Brucella ceti B1/94]
 gi|262550544|gb|EEZ06705.1| conserved hypothetical protein [Brucella ceti M490/95/1]
          Length = 437

 Score =  181 bits (460), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 152/464 (32%), Positives = 227/464 (48%), Gaps = 47/464 (10%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
            P+  FV S GC   + DS R+     S+GYE     D ADL+++NTC   + A ++   
Sbjct: 3   APRVSFV-SLGCPKALVDSERIITGLRSEGYEISRKHDGADLVIVNTCGFLDSARDESLE 61

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +G   N       E G   V+V GC+  AE + I  R P V  + GPQ Y    E +  
Sbjct: 62  AIGLALN-------ENGK--VIVTGCLG-AEPDVIRERHPNVLAITGPQAY----ESVMN 107

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           A     V +      D F  L    G     R   A+L I EGC   C+FC++P  RG  
Sbjct: 108 A-----VHEVAPPAHDPFVDLVPPQGVKLTPRHY-AYLKISEGCSNRCSFCIIPALRGDL 161

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE-----------KCTFSDLL 251
           +SR +++V+ EA KL+  GV EI ++ Q+ +A+   GLD +           +  F DL 
Sbjct: 162 VSRPINEVLREAEKLVQAGVKEILVISQDTSAY---GLDIKYQEAMWQDRTVRTKFLDLS 218

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
             L E+   VR+ Y   +P       + A G +   +PYL +P Q  S  +LK+M R   
Sbjct: 219 RELGEMGVWVRMHYVYPYPHVDEVIPLMAEGKI---LPYLDIPFQHASPAVLKNMRRPAH 275

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
             +  + I   R   PD+A+ S FIVG+PGET++DF+  +D +D+    +A  FKY    
Sbjct: 276 QEKTSRRIQAWRETCPDLAVRSTFIVGYPGETEEDFQMLLDWLDEAKIERAGCFKYEAVK 335

Query: 372 GTPGSNM-LEQVDENVKAERLLCLQKKLREQQVSFN--DACVGQIIEVLI-EKHGK-EKG 426
           G   +++ LEQV E VK  R      K  +QQ+S N     VG+ + V+I E +G  +KG
Sbjct: 336 GAKANDLGLEQVPEEVKEARWHRFMAK--QQQISTNLLKKKVGKRLPVIIDEANGTIDKG 393

Query: 427 KLVGRSPWLQ-SVVLNSKNH-NIGDIIKVRITDVKISTLYGELV 468
           +    +P +  SV ++S+    +GDI+ V+I       L+G  V
Sbjct: 394 RTRYDAPEIDGSVHISSRRPLRVGDIVTVKIEASDAYDLHGTAV 437


>gi|284036269|ref|YP_003386199.1| MiaB-like tRNA modifying enzyme [Spirosoma linguale DSM 74]
 gi|283815562|gb|ADB37400.1| MiaB-like tRNA modifying enzyme [Spirosoma linguale DSM 74]
          Length = 449

 Score =  181 bits (459), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 127/450 (28%), Positives = 220/450 (48%), Gaps = 21/450 (4%)

Query: 19  DQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAE 78
           D  +  ++    + GC++N  ++  +  +   QG+ERV      D+ ++NTC + + A +
Sbjct: 3   DTLLAVKKVAFYTLGCKLNFSETSTLARLMEQQGFERVEFNQQPDVFIINTCSVTDNADK 62

Query: 79  KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPE 138
           K        R +     K   +  V + GC AQ + +EI    P V+ V+G    +RL E
Sbjct: 63  KC-------RKIVREAQKINPEGYVAILGCYAQLKPKEI-SEIPGVDAVLGAAEKFRLHE 114

Query: 139 LLE---RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
           L+    +   G+     +  +E+  +        Y+       FL +Q+GCD  C +C +
Sbjct: 115 LMPTFVKVPTGEPAQVFNSPIEEALD----YHAAYSLNDRTRTFLKVQDGCDYPCAYCTI 170

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL-DGEKC-TFSDLLYS 253
           P  RG   S +++ VV  AR++ + GV EI L G N+  +   GL +G++  TF DL+ +
Sbjct: 171 PLARGKSRSDTIANVVKAAREIAERGVKEIVLTGVNIGDF---GLINGQRTETFFDLVQA 227

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
           L E+ G+ R R ++  P  ++D +I         +P+ H+P+QSGS+R+L  M RR+   
Sbjct: 228 LDEVDGIERFRISSIEPNLLTDEIIAFVAQSKRFVPHFHIPLQSGSNRVLGLMRRRYKRE 287

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
            Y   +++I+ + P   I  D IVG PGETD +F+ T   ++++  +    F YS R  T
Sbjct: 288 LYVDRVEKIKELMPHACIGVDVIVGHPGETDVEFKETYMFLNELPISYLHVFTYSERPNT 347

Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSP 433
               +   V  +++AER   L     +++ +F DA VG+   VL E+   + GK+ G + 
Sbjct: 348 TALTIKPTVSGHIRAERSKMLHILSDKKRRAFYDAQVGRTATVLFEEDIAD-GKMQGFTE 406

Query: 434 WLQSVVLNSKNHNIGDIIKVRITDVKISTL 463
               VV       I + + V ++ V    L
Sbjct: 407 NYVRVVAKYDPLLINETLAVHLSGVNAEGL 436


>gi|309792044|ref|ZP_07686520.1| MiaB-like tRNA modifying enzyme YliG [Oscillochloris trichoides
           DG6]
 gi|308225937|gb|EFO79689.1| MiaB-like tRNA modifying enzyme YliG [Oscillochloris trichoides
           DG6]
          Length = 439

 Score =  181 bits (459), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 130/452 (28%), Positives = 223/452 (49%), Gaps = 28/452 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           ++ + + GC  N  DS  ME +    G+ R     DAD+I++NTC     A E+    L 
Sbjct: 2   KYHILTLGCPKNSVDSEGMEGLLTDAGHTRAADATDADVIIVNTCSFIAAAREETVQVL- 60

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-ERAR 144
             R+L   R K  G  L+  AGC+AQ+ G+ +L +   V+  +  Q + R+ E++   A 
Sbjct: 61  --RDL--GRHKRAGQRLIA-AGCMAQSHGD-LLAQVSGVDAQLSTQAWTRINEVIAPPAS 114

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
               +++T       +    I       +   +A+L I +GC+  C FC +P  +G   S
Sbjct: 115 QPIPLLETPAPAYADWRSTPI----QRLQPSHSAYLKISDGCNLRCAFCTIPSIKGDMAS 170

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAW-RGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           + +  V+ E  +L+  GV EI L+ Q++  + R  GL     T  + +  +    G +RL
Sbjct: 171 KPIRAVLGEVEQLVGQGVQEIVLVAQHLTDYGRDLGLQDGLATLLEEMCQIVPHSGWIRL 230

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
            Y  ++P  +S+ LI+   +   ++ YL +P+Q      L+ M R       R +I ++R
Sbjct: 231 MY--AYPHGISERLIRVMAEHPQVLAYLDMPLQHAHPDTLRRMRRPPDTEHTRAVIQQLR 288

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           +  PD+A+ S FIVG+PGET+ +F+  +  ++++   +  +F+YS   GTP + + +QV 
Sbjct: 289 AAMPDMALRSTFIVGYPGETNAEFKTLLGFLEEMQLDRVGAFRYSREPGTPAAGLPDQVR 348

Query: 384 ENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGK--LVGRS----P 433
             V   R   L+ LQ+ +   +   N   VG+ I VLIE HG  + G+   +GRS    P
Sbjct: 349 PKVIERRWHELMQLQQGISRMR---NQRWVGRTIPVLIEAHGATDTGQPLALGRSFRDAP 405

Query: 434 WLQSVVLNSKNHNIGDIIKVRITDVKISTLYG 465
            +   V       IG ++ VRIT+     ++G
Sbjct: 406 EIDGQVFVWGEAPIGQVVDVRITEAAEYDVWG 437


>gi|153825111|ref|ZP_01977778.1| conserved hypothetical protein [Vibrio cholerae MZO-2]
 gi|229527451|ref|ZP_04416843.1| MiaB-like tRNA modifying enzyme YliG [Vibrio cholerae 12129(1)]
 gi|149741257|gb|EDM55299.1| conserved hypothetical protein [Vibrio cholerae MZO-2]
 gi|229335083|gb|EEO00568.1| MiaB-like tRNA modifying enzyme YliG [Vibrio cholerae 12129(1)]
 gi|327485100|gb|AEA79507.1| Ribosomal protein S12p Asp88 methylthiotransferase [Vibrio cholerae
           LMA3894-4]
          Length = 470

 Score =  181 bits (459), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 133/456 (29%), Positives = 225/456 (49%), Gaps = 46/456 (10%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ DS R+     ++GYE VNS  D+D++++NTC   + A ++    +G     
Sbjct: 39  SLGCPKNLVDSERILTQLRTEGYEIVNSYHDSDVVIVNTCGFIDSAVQESLDTIGEA--- 95

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               +KE G   V+V GC+   E +EI +  P V  + GP  Y  + E + +        
Sbjct: 96  ----LKENGK--VIVTGCLGARE-DEIRQVHPNVLGITGPHAYQNVLEHVHQY------- 141

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
                  + F  L + D G        A+L I EGC+  CTFC++P  RG  +SR + ++
Sbjct: 142 -APKPAHNPFTSL-VPDHGVKLTPKHYAYLKISEGCNHRCTFCIIPSMRGDLVSRPVGEI 199

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE-----------KCTFSDLLYSLSEIKG 259
           + EA +L + GV E+ ++ Q+ +A+   G+D +           +     L   L ++  
Sbjct: 200 IGEAERLKNAGVKELLVISQDTSAY---GVDTKHSLGFANGSPVRHNIKALSEELGKMGI 256

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
            VRL Y   +P       + A G +   +PYL +P Q  S R+LK M R   A    + I
Sbjct: 257 WVRLHYVYPYPHVDEIIPLMAEGKV---LPYLDIPFQHASPRVLKMMKRPGQAERTLERI 313

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            + R + P++ I S FIVGFPGET++DF+  +D + +    +   FKYSP  G   + + 
Sbjct: 314 KKWREICPELVIRSTFIVGFPGETEEDFQILLDWLKEAQLDRVGCFKYSPVEGAAANEIE 373

Query: 380 EQVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPW 434
           EQ+ E+VK    ER + +Q+++   ++      +G  ++VLI++  +E   G+    +P 
Sbjct: 374 EQIPEDVKQDRFERFMLVQQEISAAKLQKR---IGSTMQVLIDEVDEEGAIGRTYADAPE 430

Query: 435 LQSVV-LNSK-NHNIGDIIKVRITDVKISTLYGELV 468
           +  +V LN + N   G+++ V I       L+G ++
Sbjct: 431 IDGLVYLNGETNLKPGELVNVVIEHADEYDLWGSVL 466


>gi|152988570|ref|YP_001349943.1| hypothetical protein PSPA7_4596 [Pseudomonas aeruginosa PA7]
 gi|238066617|sp|A6VA58|RIMO_PSEA7 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|150963728|gb|ABR85753.1| conserved hypothetical protein [Pseudomonas aeruginosa PA7]
          Length = 440

 Score =  181 bits (459), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 146/472 (30%), Positives = 224/472 (47%), Gaps = 64/472 (13%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  FV S GC   + DS R+      +GYE V + +DAD++V+NTC   + A  +    
Sbjct: 6   PKVGFV-SLGCPKALVDSERILTQLRMEGYEVVPTYEDADVVVVNTCGFIDSAKAESLEV 64

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G         I E G   V+V GC+   E   I    P V  V GPQ Y ++       
Sbjct: 65  IGEA-------IAENGK--VIVTGCMG-VEEHAIRDVHPSVLAVTGPQQYEQV------- 107

Query: 144 RFGKRVVDTDYSVEDKFERLSIVD----GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
                V      V  K E   ++D     G        A+L I EGC+  C+FC++P  R
Sbjct: 108 -----VTAVHEVVPPKTEHNPLIDLVPPQGIKLTPRHYAYLKISEGCNHSCSFCIIPSMR 162

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFS 248
           G  +SR +  V+ EA +L+  GV E+ ++ Q+ +A           W G+ +   K    
Sbjct: 163 GKLVSRPVGDVLSEAERLVKAGVKELLVISQDTSAYGVDLKYKTDFWNGQPV---KTRMK 219

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
           +L  +L  +   VRL Y   +P       + A G    L+PYL +P Q  S ++LK+M R
Sbjct: 220 ELCEALGGMGVWVRLHYVYPYPNVDDVIPLMAAGK---LLPYLDIPFQHASPKVLKAMKR 276

Query: 309 RHTAYEYRQI--IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
              A+E + +      R + P++ I S FIVGFPGET++DF+  +D + +    +   F+
Sbjct: 277 --PAFEDKTLARFKHWREICPELTIRSTFIVGFPGETEEDFQYLLDWLTEAQLDRVGCFQ 334

Query: 367 YSPRLGTPGSNM-LEQVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422
           YSP  G P + + LE V + VK    ER +  Q+ +   ++      VG+ IEVLI++  
Sbjct: 335 YSPVEGAPANELGLEPVPDEVKQDRWERFMAHQQAISAARLQLK---VGKEIEVLIDEVD 391

Query: 423 KEKGKLVGRSPWLQS------VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           ++    VGRS W  +      V ++S     GD ++VRITD     L+ E V
Sbjct: 392 EQGA--VGRS-WADAPEIDGNVFVDSDALKPGDKVRVRITDADEYDLWAEPV 440


>gi|303253419|ref|ZP_07339561.1| hypothetical protein APP2_2100 [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|307248684|ref|ZP_07530698.1| Ribosomal protein S12 methylthiotransferase rimO [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|302647663|gb|EFL77877.1| hypothetical protein APP2_2100 [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|306854895|gb|EFM87084.1| Ribosomal protein S12 methylthiotransferase rimO [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
          Length = 443

 Score =  181 bits (459), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 134/459 (29%), Positives = 225/459 (49%), Gaps = 52/459 (11%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ DS R+     + GY  + S ++ADL+++NTC   + A ++    +G     
Sbjct: 11  SLGCPKNLVDSERILTELRTDGYNIIPSYENADLVIVNTCGFIDSAVQESLEAIGE---- 66

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               ++E G   V+V GC+   E + I    P V  + GP +Y  +  +    ++  R  
Sbjct: 67  ---ALEENGK--VIVTGCLGAKENQ-IREVHPKVLEITGPHSYEAV--MKHVHKYVPRPE 118

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
              Y+     + + +    Y       A+L I EGCD  CTFC++P  RG   SR + QV
Sbjct: 119 RNIYTSLVPAQGVKLTPKHY-------AYLKISEGCDHRCTFCIIPSMRGDLDSRPIVQV 171

Query: 211 VDEARKLIDNGVCEITLLGQNVNA---------------WRGKGLDGEKCTFSDLLYSLS 255
           +DEA++L D+GV E+ ++ Q+ +A               W G  +     T  + L SL 
Sbjct: 172 LDEAKRLADSGVKELLIVSQDTSAYALDQSKENQNKTVFWNGAPIKNNLITLCEQLGSLG 231

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
                VRL Y   +P    D LI       +L PYL +P+Q  S ++LK+M R       
Sbjct: 232 ---IWVRLHYV--YPYSHVDDLIPLMAQGKIL-PYLDIPLQHASPKVLKAMKRPGAIDRT 285

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
            + I + R + P++ + S FIVGFPGET++DF+  +D +++    +   FK+SP  G   
Sbjct: 286 LERIKKWREICPELTLRSTFIVGFPGETEEDFQMLLDFLEEAQLDRVGCFKFSPVEGAVA 345

Query: 376 SNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVG 430
           + M +QV E+VK E   R + +Q+++   ++      VG+ + V+I++  +E   G+ + 
Sbjct: 346 TEMADQVPEDVKEERFHRFMQVQQRISAARLQQK---VGKTLAVIIDEIDEEGIIGRSMA 402

Query: 431 RSPWLQSVV----LNSKNHNIGDIIKVRITDVKISTLYG 465
            +P +  VV    L+ +   +G +I V IT+     L+G
Sbjct: 403 DAPEIDGVVYVDNLSEQEVKVGQVISVSITNADEYDLWG 441


>gi|115372357|ref|ZP_01459666.1| conserved hypothetical protein [Stigmatella aurantiaca DW4/3-1]
 gi|115370570|gb|EAU69496.1| conserved hypothetical protein [Stigmatella aurantiaca DW4/3-1]
          Length = 469

 Score =  181 bits (459), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 130/453 (28%), Positives = 219/453 (48%), Gaps = 29/453 (6%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
            ++ + GC  N  DS  M      +GY  V    +A +IV+NTC     A ++    +  
Sbjct: 8   LYMMTLGCPKNRVDSEVMLGTLKQRGYRLVQEPAEAQVIVVNTCAFIGPAKQESVDSILE 67

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           +   K S    G    +VV GC++Q  G E+ +  P V+  +G   Y ++ +LL      
Sbjct: 68  MAEYKKS----GACSTLVVTGCLSQRHGGELAQEMPEVDHFLGTSAYAQIGDLLAAEASP 123

Query: 147 KRVV-DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           ++V+ D DY    +  R        N     TA+L + EGCD  C FC++P  RG + SR
Sbjct: 124 RQVIPDPDYIHNAETPR-------ENSMPSYTAYLKVSEGCDNACAFCIIPTLRGGQRSR 176

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK-GLVRLR 264
            ++ ++ EA +L D GV E+ L+ Q++ A+ G  L G K    DLL  L ++    +RL 
Sbjct: 177 PIADIIAEATRLADQGVQELNLVAQDLTAY-GHDLPG-KPKLHDLLKELVKVDVRWIRLH 234

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           Y  ++PR   D LI+       +  YL +P+Q  SD++L SM R   +     ++ ++R+
Sbjct: 235 Y--AYPRIFPDELIEVMATEKKIAKYLDMPLQHASDKLLTSMKRGRNSQFLTDLLAKLRA 292

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             P + + +  IVG PGET++DF    + V    + +   F+YS   GT   +M  ++ +
Sbjct: 293 RVPGLVMRTSLIVGLPGETEEDFELLKEFVKTQRFERLGVFQYSDEEGTAAYDMPNKIPQ 352

Query: 385 NVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-----GKLVGRSPWLQ 436
                R   ++ +QK++  +Q   N   VG+ IEVL+E    E      G+  G++P + 
Sbjct: 353 KTIERRWREIMAIQKRINREQ---NKKLVGKRIEVLVEGTSPETEHLLVGRHEGQAPEID 409

Query: 437 -SVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
             V +N      G+ + + +T+     L G +V
Sbjct: 410 GQVYINDGLAYPGEFVTLEVTEAHDYDLVGRVV 442


>gi|213962370|ref|ZP_03390633.1| conserved hypothetical protein [Capnocytophaga sputigena Capno]
 gi|213955036|gb|EEB66355.1| conserved hypothetical protein [Capnocytophaga sputigena Capno]
          Length = 436

 Score =  181 bits (459), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 141/455 (30%), Positives = 228/455 (50%), Gaps = 47/455 (10%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC-HIREKAAEKVYSFLGRI 87
           V + GC  NVYDS  +     + G E V+   + +++V+NTC  I     E + + L  +
Sbjct: 13  VVTLGCSKNVYDSEVLMGQLKAGGKEVVHE-KEGNIVVINTCGFINNAKEESINTILDYV 71

Query: 88  RNLKNSRIKEGGDL-LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           +       KE G +  V V GC+++    ++ +  P V+   G      LP LL      
Sbjct: 72  QQ------KEAGLVDKVFVMGCLSERYKPDLEKEIPDVDQYFGTS---ELPALL------ 116

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
            +V+  DY  E   ERL+     Y       A+L I EGCD+ C+FC +P  RG  IS S
Sbjct: 117 -KVLGADYKHELIGERLTTTPKNY-------AYLKISEGCDRPCSFCAIPLMRGAHISTS 168

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGL--VRL 263
           +  +V EA KL   GV E+ L+ Q++  +   GLD  +K   +DLL +L +++G+  +R+
Sbjct: 169 IKDLVTEAEKLAAKGVKELILIAQDITYY---GLDLYKKRALADLLRALVKVEGIEWIRI 225

Query: 264 RYT--TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
            Y   T  P D+ + ++KA   +     YL +P+Q  SD+IL SM R  T  +  +++ +
Sbjct: 226 HYAFPTGFPMDVLE-VMKAEPKI---CNYLDIPLQHISDKILTSMKRGTTQEKTTKLLKK 281

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
            R   P++AI +  IVG+PGET++DF+A  + V  + + +   F YS    T    + + 
Sbjct: 282 FREAVPEMAIRTTLIVGYPGETEEDFQALKEFVKAMRFDRLGCFTYSHEENTTAYELADD 341

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPW-----LQ 436
           V E VK +R   + +   +     N A VG++   LI++  KE    VGR+ +       
Sbjct: 342 VPEEVKLQRANEIMELQSQISWELNQAKVGKVFRCLIDR--KEGNYFVGRTEYDSPDVDN 399

Query: 437 SVVLNSKNH--NIGDIIKVRITDVKISTLYGELVV 469
            V++++K H   IGD   V+I +     LYGE + 
Sbjct: 400 EVLIDAKKHYVKIGDFTDVKIIEAADYDLYGEPIT 434


>gi|84489190|ref|YP_447422.1| 2-methylthioadenine synthetase [Methanosphaera stadtmanae DSM 3091]
 gi|84372509|gb|ABC56779.1| predicted 2-methylthioadenine synthetase [Methanosphaera stadtmanae
           DSM 3091]
          Length = 424

 Score =  181 bits (459), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 127/449 (28%), Positives = 236/449 (52%), Gaps = 32/449 (7%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + +++++GC  N  D+  M ++  ++ Y+ V  +++AD+I+LNTC+++    +K+   + 
Sbjct: 2   KIYLETHGCTFNQADTDIMANIL-AKKYDIVYDVEEADVIILNTCYVKLPTEQKM---IT 57

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           +IR  K     E  D  +++ GC+ + + +  L +    +  +GP    ++ E++E+A  
Sbjct: 58  KIRKYKT----EFPDKKLIIGGCMVEVDDKR-LEKFAGDDCWIGPHKLDKVDEVVEKAIN 112

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRK--RGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           G+ V         ++ +   +  G  +K    +   L I EGC+  CTFC     RG  I
Sbjct: 113 GEVV--------HEYGKTRAIKAGKGKKNSESLVHILQICEGCNGQCTFCCTRIARGFLI 164

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVR 262
           S  +  +V+EA+  +++G  E+ +  Q+   +   G+D GE  +F+DLL  L  I+G  R
Sbjct: 165 SYPIDVIVEEAKDAVEHGCKELQVTAQDTACF---GMDTGE--SFADLLNKLGAIEGDFR 219

Query: 263 LRYTTSHPRDMSDCL---IKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           +R    +P+ + + L   I A  + D +  ++HLP+QSGS ++LK MNR+HT  EY+ I+
Sbjct: 220 IRVGMMNPQSIKNQLHEVIDAFKNNDKIFNFVHLPIQSGSPKVLKEMNRKHTLDEYKYIL 279

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
           +  R   P +++++D IVG+P ET++DF  T++L+ +I        KY  R G   SN L
Sbjct: 280 NEFRKEIPQMSLATDIIVGYPTETEEDFNQTLELLKEIKPDIVHISKYMHRPGAK-SNHL 338

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV 439
           +++D N+   R   + +   E  +  N      I  VLI   G   G  VG +   ++V+
Sbjct: 339 KEIDHNIMKNRSHRVNQVKTEVMLEKNKEYENTIQNVLITSKG-SSGGYVGYTDSYKNVI 397

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
           ++     IG  + V+I + K + L  + +
Sbjct: 398 VDEA--EIGSFMDVKIIEGKRTYLLAQRI 424


>gi|311280283|ref|YP_003942514.1| MiaB-like tRNA modifying enzyme YliG [Enterobacter cloacae SCF1]
 gi|308749478|gb|ADO49230.1| MiaB-like tRNA modifying enzyme YliG [Enterobacter cloacae SCF1]
          Length = 441

 Score =  181 bits (459), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 138/458 (30%), Positives = 232/458 (50%), Gaps = 43/458 (9%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  FV S GC  N+ DS R+     ++GY+ V S D+AD++++NTC   + A ++    
Sbjct: 8   PKIGFV-SLGCPKNLVDSERILTELRTEGYDVVPSYDNADMVIVNTCGFIDSAVQESLEA 66

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G         +KE G   V+V GC+   E ++I    P V  + GP +Y ++  L    
Sbjct: 67  IGEA-------LKENGK--VIVTGCLGAKE-DQIREVHPKVLEITGPHSYEQV--LQHVH 114

Query: 144 RFGKRVVDTDYSVEDKFERLSIV-DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            +  +     +        LS+V + G        A+L I EGC+  CTFC++P  RG  
Sbjct: 115 HYVPKPQHNPF--------LSLVPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGDL 166

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYSL 254
            SR +  V+ EA++L D GV E+ ++ Q+ +A+      R    +GE  K +   L   L
Sbjct: 167 DSRPIGDVLAEAKRLADAGVKELLVISQDTSAYGVDVKHRTGFYNGEPVKTSMVSLCEQL 226

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
           +++   VRL Y   +P       + A G +   +PYL +P+Q  S RILK M R  +   
Sbjct: 227 AKLGVWVRLHYVYPYPHVDDVIPLMAEGKI---LPYLDIPLQHASPRILKLMKRPGSVDR 283

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
               I + R + P++ + S FIVGFPGET+DDF+  +D + +    +   FKYSP  G  
Sbjct: 284 QLARIKQWREICPELTLRSTFIVGFPGETEDDFQMLLDFLKEARLDRVGCFKYSPVEGAA 343

Query: 375 GSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLV 429
            + + +QV E VK E   R + LQ+++  +++      +G+ I V+I++  +E   G+ +
Sbjct: 344 ANELADQVPEEVKEERWNRFMQLQQQISAERLQEK---IGREIMVIIDEVDEEGAIGRSM 400

Query: 430 GRSPWLQ-SVVLNSKNH-NIGDIIKVRITDVKISTLYG 465
             +P +  +V LN +     GD+++V++       L+G
Sbjct: 401 ADAPEIDGAVYLNGETRVKPGDVLRVKVEHADEYDLWG 438


>gi|118431496|ref|NP_148004.2| MiaB-like protein [Aeropyrum pernix K1]
 gi|116062821|dbj|BAA80529.2| MiaB homolog [Aeropyrum pernix K1]
          Length = 450

 Score =  181 bits (459), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 134/431 (31%), Positives = 219/431 (50%), Gaps = 26/431 (6%)

Query: 24  PQR-FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           P R ++++ YGC ++ +D+L M       GY RV   +DAD+I++NTC +R    +++  
Sbjct: 16  PSRTYYLEVYGCSLSEFDALIMASRLEEAGYRRVARPEDADVILVNTCAVRLDTEQRIAE 75

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            L ++R        +  D   VVAGC+ +A    + R  P  +++  PQ   R+ + ++ 
Sbjct: 76  RLEKLR-------LQLPDRKYVVAGCLVKARPGLVARLVPEASLL-APQAVERVLDAVDA 127

Query: 143 ARFGKRVVDTDYSVEDK-FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
              G+R+V  D   + +   +L I D            + IQEGC   C+FC+    R  
Sbjct: 128 LESGRRLVVLDGRRDTRSMPQLPITDA--------VVTVMIQEGCLGDCSFCITKVARRQ 179

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS-LSEIKGL 260
             S S   +V+  R+ ++ G  EI L G +V  + G  L G K   +DL+ + L +++G 
Sbjct: 180 VRSYSPRVIVERVREAVEKGAREIRLTGTDVAVY-GVDLPG-KPNLADLVAAILEKVEGD 237

Query: 261 VRLRYTTSHPRDMS---DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
            R+R     P  +    D L+  + D  V   Y HLPVQSG D +LK M R +T  EY+ 
Sbjct: 238 YRIRVGMMTPDQVEPYLDSLLDVYRDERVYK-YFHLPVQSGDDEVLKIMKRNYTVSEYKA 296

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
           I  RI+S  PD  I++D IVG PGET + F  T+ LV+++ + +    +YS R  T  ++
Sbjct: 297 IHRRIKSRFPDAMIATDIIVGHPGETWEAFWNTVRLVEELRFEKVHLAQYSLRPHTEAAS 356

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQS 437
           M EQV ++VK ER   L K + E  +  N + VG+ +  L+ +    +G + GR      
Sbjct: 357 M-EQVPDSVKKERSRILGKIVAEIGLEINGSYVGRRVRALVTERSWREGSMTGRLDNYTP 415

Query: 438 VVLNSKNHNIG 448
           ++L  +   +G
Sbjct: 416 IILPYEERAMG 426


>gi|256842238|ref|ZP_05547742.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Parabacteroides sp. D13]
 gi|301308989|ref|ZP_07214934.1| Fe-S oxidoreductase [Bacteroides sp. 20_3]
 gi|256736122|gb|EEU49452.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Parabacteroides sp. D13]
 gi|300833015|gb|EFK63640.1| Fe-S oxidoreductase [Bacteroides sp. 20_3]
          Length = 444

 Score =  181 bits (459), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 125/403 (31%), Positives = 202/403 (50%), Gaps = 22/403 (5%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N  ++  +  +   QG  +V   + AD+ V+NTC + E A +K    + RI   
Sbjct: 16  TLGCKLNFAETSTIGKLLAEQGVRKVRPGEKADICVVNTCSVTELADKKCRQAIRRIS-- 73

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLP---ELLERARFGK 147
                K+     +VV GC AQ + EE+      V++V+G +    +    E LE+   G 
Sbjct: 74  -----KQHPGAFIVVTGCYAQLKPEEVSHIEG-VDLVLGAEQKLEILQYLENLEKKEHGG 127

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
            V+ +       F      D   +R R    FL +Q+GCD +C++C +P+ RG   + ++
Sbjct: 128 TVIASQSKDIRSFSPSCSAD---DRTR---HFLKVQDGCDYYCSYCTIPFARGRSRNGTI 181

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
           + +V++A+++   G  EI L G N+  + GK  D    TF DL+ +L E++G+VR R ++
Sbjct: 182 ASMVEQAQEVARKGGKEIVLTGVNIGDF-GKSTDE---TFIDLIRALDEVEGIVRYRISS 237

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
             P  ++D  I          P+ H+P+QSGSD +L+ M RR+    +R  I++I+ V P
Sbjct: 238 IEPNLITDEAIDFVAHSKRFAPHFHIPLQSGSDAVLQLMRRRYDTALFRHKIEKIKEVMP 297

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
              I  D IVG  GETD+ F      +D +  +Q   F YS R GT    +   VD   K
Sbjct: 298 HAFIGVDVIVGTRGETDEYFEEARQFIDSLDISQLHVFSYSERPGTQALKIDYVVDPKTK 357

Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG 430
             R   L     ++  +F +A +GQ   VL E H K+ GK+ G
Sbjct: 358 HARSQQLLDISDQKLHAFYEAHIGQEANVLFE-HTKKDGKMHG 399


>gi|254302942|ref|ZP_04970300.1| 2-methylthioadenine synthetase [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
 gi|148323134|gb|EDK88384.1| 2-methylthioadenine synthetase [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
          Length = 435

 Score =  181 bits (459), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 131/450 (29%), Positives = 225/450 (50%), Gaps = 42/450 (9%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  +++    +GYE V   D +D+ ++N+C +   A  K  + L R + +
Sbjct: 11  TLGCKVNQYETESIKNQLIKRGYEEVPFEDKSDIYIINSCTVTSIADRKTRNMLRRAKKI 70

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILR------------RSPIVNVVVGPQTYYRLPE 138
                    D  V+V GC AQ    EIL             +S IVN V   +       
Sbjct: 71  -------NPDAKVIVTGCYAQTNSREILEIEDVDFVIDNKNKSNIVNFVGAIEDIS---- 119

Query: 139 LLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
             ER + G    + +Y  E +F  L         +    A++ IQ+GC+ FC++C +P+ 
Sbjct: 120 -FEREKNGNIFQEKEYQ-EYEFATL---------REMTRAYVKIQDGCNHFCSYCKIPFA 168

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEI 257
           RG   SR    ++ E  KL+++G  E+ L+G +++A+   G D  EK  F  LL  + +I
Sbjct: 169 RGKSRSRKKENILKEIEKLVEDGFKEVILIGIDLSAY---GEDFKEKDNFESLLEEILKI 225

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
           K L R+R  + +P  ++D  I+   + + LMP+LH+ +QS  D +LK+M R + +   R+
Sbjct: 226 KNLKRVRIGSVYPDKITDRFIELFKNKN-LMPHLHISLQSCDDTVLKNMRRNYGSSLIRE 284

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
            + +++S   ++  ++D IVGFP E +  F+ T D++ +I ++    F+YS R GT  SN
Sbjct: 285 SLLKLKSKVENMEFTADVIVGFPKEDETMFQNTHDVIKEIEFSGLHIFQYSDREGTIASN 344

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQS 437
           M  +VD   K +R   L    +E  V      + + +EVL+E+   + G+  G S     
Sbjct: 345 MDGKVDAKTKKQRADRLDNLKQEMIVESRKKYLEKNLEVLVEEE--KDGEYFGYSQNYLR 402

Query: 438 VVLNSKNHN-IGDIIKVRITDVKISTLYGE 466
           V   S   + I  +I ++I  V+   L GE
Sbjct: 403 VKFKSDEKDLINKLINIKIKCVENDMLIGE 432


>gi|109898153|ref|YP_661408.1| MiaB-like tRNA modifying enzyme YliG [Pseudoalteromonas atlantica
           T6c]
 gi|123064681|sp|Q15UT4|RIMO_PSEA6 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|109700434|gb|ABG40354.1| SSU ribosomal protein S12P methylthiotransferase [Pseudoalteromonas
           atlantica T6c]
          Length = 473

 Score =  181 bits (459), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 131/415 (31%), Positives = 208/415 (50%), Gaps = 42/415 (10%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ DS R+     ++GY+ VN+ +DADL+++NTC   + A ++    +G     
Sbjct: 39  SLGCPKNLVDSERILTQLRTEGYDVVNTYNDADLVIVNTCGFIDTAVQESLDTIGEA--- 95

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               + E G   V+V GC+   E +EI    P V  + GP  Y    E++ +    + + 
Sbjct: 96  ----LAENGK--VIVTGCLGIKE-DEIREVHPNVLAITGPHAYE---EVVNQVH--EHLP 143

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
              Y   + +  L + D G        A+L I EGC+  CTFC++P  RG  +SR + ++
Sbjct: 144 QPSY---NPYMNL-VPDIGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGDLVSRPIGEI 199

Query: 211 VDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYSLSEIKG 259
           +DEA++L + GV E+ ++ Q+ +A           W G  +   K   ++L   L E+  
Sbjct: 200 LDEAQRLKNAGVKELLVISQDTSAYGVDVKNKMGFWNGMPV---KTGMTELCEKLGEMGM 256

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
            VRL Y   +P       + A G +   +PYL +P Q  S RILK M R   A    + I
Sbjct: 257 WVRLHYVYPYPSVDKVMPLMASGKV---LPYLDIPFQHASPRILKLMKRPAAAERTMERI 313

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            + R + P++ I S FIVGFPGET++DF+  +D +D     +   FKYS   G   +++ 
Sbjct: 314 KKWRELCPELVIRSTFIVGFPGETEEDFQMLLDFLDDAQLERVGCFKYSDVEGAKANDLP 373

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDAC--VGQIIEVLIEKHGKEKGKLVGRS 432
           + V E VK ER     +K  +QQ+S       +G  I+VLI++  +E    +GRS
Sbjct: 374 DPVSEEVKQERFERFMQK--QQQISSAKLQRRIGSTIQVLIDEVDEEGA--IGRS 424


>gi|326561620|gb|EGE11958.1| MiaB family tRNA modifying enzyme [Moraxella catarrhalis 46P47B1]
          Length = 458

 Score =  181 bits (459), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 132/429 (30%), Positives = 213/429 (49%), Gaps = 43/429 (10%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  FV S GC   + DS R+      +GY+  N+ D ADL+V+NTC   E A ++    
Sbjct: 10  PKIGFV-SLGCPKALVDSERIITELTYEGYQVANNYDGADLVVVNTCGFIESAVQESLDA 68

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G   N KN +        V+V GC+ + + E+I    P V  V G   Y  +   +   
Sbjct: 69  IGEAIN-KNGK--------VIVTGCLGK-DAEKIRTMHPAVLAVTGAHAYEEVISAVNH- 117

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
              K +   +Y  + K + ++  D G        A++ I EGC+  CTFC++P  RG  +
Sbjct: 118 HVPKPIKSKEY--DPKIDLIN--DAGIKLTPKHYAYVKISEGCNHRCTFCIIPSLRGDLV 173

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLY 252
           SR +  V+ EA  L  +GV E+ ++ Q+ +A           W G  L   K  F D+  
Sbjct: 174 SRPIDSVMKEAVALKKSGVKELLVISQDTSAYGVDLKYKTVFWEGWPL---KSKFYDMCE 230

Query: 253 SLSEIKGLVRLRYTTSHP------RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306
           ++S++   VRL Y   +P      + M+D +  + G +  L+PYL +P Q  S  +LK+M
Sbjct: 231 AMSKLGIWVRLHYVYPYPHVDAVVQIMADSMTASAG-MGGLLPYLDIPFQHASPNVLKAM 289

Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
            R   +    + I   R++ PDI I S F+VGFPGETD+DF   +D + K    +   F 
Sbjct: 290 KRPAMSENTLERIQAWRAICPDIVIRSTFVVGFPGETDEDFEYLLDWLTKARLDRVGCFT 349

Query: 367 YSPRLGTPGSNMLEQVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK 423
           YS   G   +++   V E+VK    ERL+ LQ+K+  ++++     VG+ + VL+++   
Sbjct: 350 YSEIEGAVANDLPNPVPESVKQSRYERLMALQQKISAEKLAEK---VGKTLVVLVDEIDT 406

Query: 424 EKGKLVGRS 432
           E+   + RS
Sbjct: 407 EENIAICRS 415


>gi|239616755|ref|YP_002940077.1| MiaB-like tRNA modifying enzyme [Kosmotoga olearia TBF 19.5.1]
 gi|239505586|gb|ACR79073.1| MiaB-like tRNA modifying enzyme [Kosmotoga olearia TBF 19.5.1]
          Length = 425

 Score =  181 bits (459), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 121/392 (30%), Positives = 206/392 (52%), Gaps = 28/392 (7%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           ++GC++N Y++  M ++     +      + AD+ V+N+C +  +A  K+     R++  
Sbjct: 9   TFGCKLNQYETEGMAELL-QNDFRVTFDSEIADIFVINSCTVTAEAERKLRQLYRRLK-- 65

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
                K  G   V+V GC ++    E+  +    ++++G +   ++ E L+         
Sbjct: 66  ----AKNPGSKFVIV-GCYSELSAGEL--KDLGFDLILGIKDKLKIKEFLKEN------- 111

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQ 209
             +  ++D F+   +  G Y R R   A++ IQ+GC   C++C +   RG +I S+    
Sbjct: 112 TENTCIKDYFQ---VTKGPYGRTR---AYIGIQDGCLNNCSYCRIRLARGNKIISKPPEV 165

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSH 269
           V +E + L+++G  EI L G N+  +   G  GE  +   LL  L +I+G  RLR ++  
Sbjct: 166 VAEELKTLVEHGFQEIVLTGINIGFY---GF-GEGYSLISLLKQLVKIEGEWRLRLSSLD 221

Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329
           PR +S+ LI    D   +  ++HL +QSGSD++LKSMNR +T  +  QI+   RS     
Sbjct: 222 PRLVSNELITFMTDNPKIAQHVHLSLQSGSDKVLKSMNRNYTTNDVEQIVALFRSRNNRF 281

Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAE 389
           + ++D IVGFPGETD DF  T++ V +I + +   F++SPR GT  + M  Q+  N+K E
Sbjct: 282 SFTTDVIVGFPGETDTDFVETLEFVKRIRFLKVHIFRFSPRPGTKAARMSNQISGNIKKE 341

Query: 390 RLLCLQKKLREQQVSFNDACVGQIIEVLIEKH 421
           R   L+K   E    + +  VG+   VLIEK+
Sbjct: 342 RATVLKKVALEASKDYLNEHVGKESTVLIEKN 373


>gi|33152883|ref|NP_874236.1| hypothetical protein HD1896 [Haemophilus ducreyi 35000HP]
 gi|81423187|sp|Q7VKK2|RIMO_HAEDU RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|33149108|gb|AAP96625.1| conserved hypothetical protein [Haemophilus ducreyi 35000HP]
          Length = 443

 Score =  181 bits (459), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 135/466 (28%), Positives = 227/466 (48%), Gaps = 51/466 (10%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           VP   F+ S GC  N+ DS R+     S GY  + S ++ADL+++NTC   + A ++   
Sbjct: 4   VPNIGFI-SLGCPKNLVDSERILTELRSDGYNIIPSYENADLVIVNTCGFIDSAVQESLE 62

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +G         +KE G   V+V GC+   E + I    P V  + GP +Y  + + + +
Sbjct: 63  AVGE-------ALKENGK--VIVTGCLGAKENQ-IREVHPKVLEITGPHSYEAVMQHVHK 112

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
             +  R     Y+     + + +    Y       A+L I EGCD  CTFC++P  RG  
Sbjct: 113 --YVPRPERNMYTSLVPAQGVKLTPKHY-------AYLKISEGCDHRCTFCIIPSMRGDL 163

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNA---------------WRGKGLDGEKCTF 247
            SR + Q++DEA++L D+GV E+ ++ Q+ +A               W G  +   K   
Sbjct: 164 DSRPIVQILDEAKRLADSGVKELLIVSQDTSAYALDQTKENQNKTVFWNGVPI---KNNL 220

Query: 248 SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307
             L   L+ +   +RL Y   +P   +   + A G +   +PYL +P+Q  S +ILK+M 
Sbjct: 221 ISLCEQLATLGIWIRLHYVYPYPHVDNLIPLMAEGKI---LPYLDIPLQHASPKILKAMK 277

Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           R  +     + I + R + P++ + S FIVGFPGET++DF+  +D + +    +   FK+
Sbjct: 278 RPGSIDRTLERIKQWREICPELTLRSTFIVGFPGETEEDFQMLLDFLTEAQLDRVGCFKF 337

Query: 368 SPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK 427
           SP  G   + M EQV E VK ER     +  +   V+     +G+ + ++I++   ++  
Sbjct: 338 SPVDGAVATEMAEQVPEEVKEERFHRFMQVQQRISVARLQQKIGKTLAIIIDE--IDEYG 395

Query: 428 LVGRS----PWLQSVV----LNSKNHNIGDIIKVRITDVKISTLYG 465
           ++GRS    P +  VV    ++ +   +G II V IT+     L+G
Sbjct: 396 IIGRSMADAPEIDGVVYVDNISQQAVTVGQIILVTITNADEYDLWG 441


>gi|257462828|ref|ZP_05627234.1| Fe-S oxidoreductase [Fusobacterium sp. D12]
 gi|317060457|ref|ZP_07924942.1| Fe-S oxidoreductase [Fusobacterium sp. D12]
 gi|313686133|gb|EFS22968.1| Fe-S oxidoreductase [Fusobacterium sp. D12]
          Length = 436

 Score =  181 bits (458), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 131/443 (29%), Positives = 231/443 (52%), Gaps = 24/443 (5%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +R    + GC++N Y+S  +++    +GYE V     AD+ ++N+C +   A  K  + L
Sbjct: 5   KRVAFYTLGCKVNQYESESIKNQLLQKGYEEVGFETTADVYIVNSCTVTSIADRKTRNML 64

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R +       K+     V+V GC A+   +++L    I + V+G +    +   +E   
Sbjct: 65  RRAK-------KQNPLGKVIVTGCYAETNRKDLLEMEEI-DFVIGNKDKNAVANFVEEIH 116

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT-AFLTIQEGCDKFCTFCVVPYTRGIEI 203
             +R        E  F+     +  +   R +T A++ IQ+GC++FC++C +P+ RG   
Sbjct: 117 NQER----GEREESIFQEKEYQEYEFATFREMTRAYVKIQDGCNEFCSYCKIPFARGRSR 172

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR   +V++E  KL+  G  EI L+G N+  + GK L  E+  F DL+ ++ +   L R+
Sbjct: 173 SRRPEKVLEEIDKLLVEGFREIILIGINLGDY-GKDLK-EEINFEDLVRNILKKDLLQRV 230

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R  + +P  +++  +    D   +MP+LH+ +QS  D +L++M R +      + +  +R
Sbjct: 231 RIGSVYPDRITESFMTLF-DHPKMMPHLHISLQSCDDTVLRNMRRNYGKDVILKTLFSLR 289

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              P +  ++D IVGFPGET++ F+ T D ++KIG++    F YS R GT  S M  ++ 
Sbjct: 290 KKVPMMEYTADVIVGFPGETEEMFQNTYDSLEKIGFSHLHIFPYSDREGTIASRMEHKIQ 349

Query: 384 ENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440
             VK ER   L  LQKK+ E +  +    +G+ +EVLIE+  ++ G   G SP    V +
Sbjct: 350 TGVKRERVGILENLQKKIEEDRRKY---YLGKRLEVLIEE--EKDGYWWGYSPNYLRVKI 404

Query: 441 NSKNHNIGDIIKVRITDVKISTL 463
             KN +I  +++V++  V+   L
Sbjct: 405 RGKNLSINSMVQVKVEQVEKGVL 427


>gi|182417560|ref|ZP_02626322.2| conserved hypothetical protein [Clostridium butyricum 5521]
 gi|237667762|ref|ZP_04527746.1| conserved hypothetical protein [Clostridium butyricum E4 str. BoNT
           E BL5262]
 gi|182378573|gb|EDT76101.1| conserved hypothetical protein [Clostridium butyricum 5521]
 gi|237656110|gb|EEP53666.1| conserved hypothetical protein [Clostridium butyricum E4 str. BoNT
           E BL5262]
          Length = 464

 Score =  181 bits (458), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 131/441 (29%), Positives = 224/441 (50%), Gaps = 36/441 (8%)

Query: 31  SYGCQMNVYDS-LRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRN 89
           S GC  N  DS + + +M  S+ Y   N+  +AD++++NTC   E A ++    +  + +
Sbjct: 28  SLGCDKNRVDSEIILGNM--SRDYTITNNPKEADILIVNTCGFIESAKQESIDTILEMAD 85

Query: 90  LK-NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
            K N + K     L++  GC+ Q   EE+    P +++++G   Y ++  ++     G  
Sbjct: 86  YKVNYKCK-----LLIATGCLIQRYSEELGELIPELDLMLGVNDYDKINSVITNFINGN- 139

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGV------TAFLTIQEGCDKFCTFCVVPYTRGIE 202
                   E K   ++  D G N    +      +A++ I EGC+ FCT+C++P  RG  
Sbjct: 140 --------EKKEGLVNYTDEGINEGSRILTTQKGSAYIRIAEGCNNFCTYCIIPKIRGKF 191

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR +  ++ EA +L   G+ E+ L+ Q+   + G  + G+K    +LL  LS+I+G+  
Sbjct: 192 RSRKMENILKEAEELASQGIKELILIAQDTTMY-GSDIYGKK-NLHELLNELSKIEGIEW 249

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R    +P ++ D LI      + ++ YL LP+Q  S+ +LK M R+ T     + ID +
Sbjct: 250 IRVLYCYPEEIYDELIDEMAQNNKVVKYLDLPIQHISNHVLKLMGRKTTKEAILKKIDTL 309

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R   P + I + FIVGFP ET++DF    D +      +   F YS    TP + M  Q+
Sbjct: 310 RERIPGMIIRTTFIVGFPQETEEDFNEIKDFLQDYKLEKVGVFTYSQEENTPAARMDGQI 369

Query: 383 DENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE--KGKLVGRSPWLQS 437
           DE VK +R   L+ LQK + E+    N+  +G+I ++L+E +  E  +G+    +P + +
Sbjct: 370 DEEVKKQREKDLMLLQKGISEK---INELKIGKIYDILVEGYDGEDYRGRSYEMAPEIDA 426

Query: 438 VVLNSKNHN--IGDIIKVRIT 456
            V    N N  IG  +KV+IT
Sbjct: 427 EVFFKCNDNLEIGTFVKVKIT 447


>gi|319407229|emb|CBI80868.1| putative enzyme [Bartonella sp. 1-1C]
          Length = 437

 Score =  181 bits (458), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 147/463 (31%), Positives = 222/463 (47%), Gaps = 43/463 (9%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + P+  FV S GC   + DS R+     S+GYE  N    ADL+++NTC   + A ++  
Sbjct: 2   VAPRISFV-SLGCPKALVDSERIITRLRSEGYEISNKHKGADLVIVNTCGFIDSARKESL 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           + +       +  IK  G   V+V GC+  AE   IL+  P V  + GPQ Y    E + 
Sbjct: 61  ANI-------DEAIKNNGK--VIVTGCLG-AEPNIILQAHPNVLAITGPQDY----ESVI 106

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           RA     V      V D F  L    G     R   A+L I EGC   C+FC++P  RG 
Sbjct: 107 RA-----VHTVIPPVHDPFLDLVPPQGIRLTPRHY-AYLKISEGCSNRCSFCIIPTLRGN 160

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDL 250
            ISR +S V+ EA KL+  GV E+ ++ Q+  A           W+ + +   K  F DL
Sbjct: 161 LISRPISDVLREAEKLVLAGVKELLVISQDTGAYGIDLKYAASVWQNRVI---KTKFLDL 217

Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
              L E+   VR+ Y   +P       + A G    ++PYL +P Q  S  +L++M R  
Sbjct: 218 CRELGEMGIWVRMHYVYPYPHIDEAIELMAAGK---ILPYLDIPFQHASPNVLRNMKRPA 274

Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370
              +  + I+R R + PD+ + S FIVGFPGET++DF   ++ +++    +A  FKY   
Sbjct: 275 HVEKISRRIERWREICPDLTLRSTFIVGFPGETNEDFNMLLEWLEEAKIERAGCFKYEAV 334

Query: 371 LGTPGSNM-LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGK-EKGK 427
            G   +N+ LE + E VK +R      K ++         +G+ ++VLI E  GK  KG+
Sbjct: 335 KGAVANNLGLENIAEEVKEKRWHRFMTKQQKISAHLLKKKIGKRLQVLIDETQGKIAKGR 394

Query: 428 LVGRSPWLQSVVLNS--KNHNIGDIIKVRITDVKISTLYGELV 468
               SP +  +V  S  K   IG+ + V+I       LYG ++
Sbjct: 395 SKYDSPEIDGIVHISSRKPLRIGEFVTVKIEQSDSYDLYGNVI 437


>gi|296112956|ref|YP_003626894.1| MiaB family tRNA modifying enzyme [Moraxella catarrhalis RH4]
 gi|295920650|gb|ADG61001.1| MiaB family tRNA modifying enzyme [Moraxella catarrhalis RH4]
          Length = 504

 Score =  181 bits (458), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 132/430 (30%), Positives = 213/430 (49%), Gaps = 43/430 (10%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
            P+  FV S GC   + DS R+      +GY+  N+ D ADL+V+NTC   E A ++   
Sbjct: 55  TPKIGFV-SLGCPKALVDSERIITELTYEGYQVANNYDGADLVVVNTCGFIESAVQESLD 113

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +G   N KN +        V+V GC+ + + E+I    P V  V G   Y  +   +  
Sbjct: 114 AIGEAIN-KNGK--------VIVTGCLGK-DAEKIRTMHPAVLAVTGAHAYEEVISAVNH 163

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
               K +   +Y  + K + ++  D G        A++ I EGC+  CTFC++P  RG  
Sbjct: 164 -HVPKPIKSKEY--DPKIDLIN--DAGIKLTPKHYAYVKISEGCNHRCTFCIIPSLRGDL 218

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLL 251
           +SR +  V+ EA  L  +GV E+ ++ Q+ +A           W G  L   K  F D+ 
Sbjct: 219 VSRPIDSVMKEAVALKKSGVKELLVISQDTSAYGVDLKYKTVFWEGWPL---KSKFYDMC 275

Query: 252 YSLSEIKGLVRLRYTTSHP------RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
            ++S++   VRL Y   +P      + M+D +  + G +  L+PYL +P Q  S  +LK+
Sbjct: 276 EAMSKLGIWVRLHYVYPYPHVDAVVQIMADSMTASAG-MGGLLPYLDIPFQHASPNVLKA 334

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           M R   +    + I   R++ PDI I S F+VGFPGETD+DF   +D + K    +   F
Sbjct: 335 MKRPAMSENTLERIQAWRAICPDIVIRSTFVVGFPGETDEDFEYLLDWLTKARLDRVGCF 394

Query: 366 KYSPRLGTPGSNMLEQVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422
            YS   G   +++   V E+VK    ERL+ LQ+K+  ++++     VG+ + VL+++  
Sbjct: 395 TYSEIEGAVANDLPNPVPESVKQSRYERLMALQQKISAEKLAEK---VGKTLVVLVDEID 451

Query: 423 KEKGKLVGRS 432
            E+   + RS
Sbjct: 452 TEENIAICRS 461


>gi|262401907|ref|ZP_06078472.1| ribosomal protein S12p Asp88 methylthiotransferase [Vibrio sp.
           RC586]
 gi|262351879|gb|EEZ01010.1| ribosomal protein S12p Asp88 methylthiotransferase [Vibrio sp.
           RC586]
          Length = 470

 Score =  181 bits (458), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 133/456 (29%), Positives = 225/456 (49%), Gaps = 46/456 (10%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ DS R+     ++GYE VNS  D+D++++NTC   + A ++    +G     
Sbjct: 39  SLGCPKNLVDSERILTQLRTEGYEIVNSYHDSDVVIVNTCGFIDSAVQESLDTIGEA--- 95

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               +KE G   V+V GC+   E +EI +  P V  + GP  Y  + E + +        
Sbjct: 96  ----LKENGK--VIVTGCLGARE-DEIRQVHPNVLGITGPHAYQNVLEHVHQY------- 141

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
                  + F  L + D G        A+L I EGC+  CTFC++P  RG  +SR + ++
Sbjct: 142 -APKPAHNPFTSL-VPDHGVKLTPKHYAYLKISEGCNHRCTFCIIPSMRGDLVSRPVGEI 199

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE-----------KCTFSDLLYSLSEIKG 259
           + EA +L + GV E+ ++ Q+ +A+   G+D +           +     L   L ++  
Sbjct: 200 IGEAERLKNAGVKELLVISQDTSAY---GVDTKHSLGFANGSPVRHNIKALSEELGKMGI 256

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
            VRL Y   +P       + A G +   +PYL +P Q  S R+LK M R   A    + I
Sbjct: 257 WVRLHYVYPYPHVDEIIPLMAKGKV---LPYLDIPFQHASPRVLKMMKRPGQAERTLERI 313

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            + R + P++ I S FIVGFPGET++DF+  +D + +    +   FKYSP  G   + + 
Sbjct: 314 KKWREICPELVIRSTFIVGFPGETEEDFQILLDWLKEAQLDRVGCFKYSPVEGAAANEIE 373

Query: 380 EQVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPW 434
           EQ+ E+VK    ER + +Q+++   ++      +G  ++VLI++  +E   G+    +P 
Sbjct: 374 EQIPEDVKQDRFERFMLVQQEISAAKLQKR---IGSTMQVLIDEVDEEGAIGRTYADAPE 430

Query: 435 LQSVV-LNSK-NHNIGDIIKVRITDVKISTLYGELV 468
           +  +V LN + N   G+++ V I       L+G ++
Sbjct: 431 IDGLVYLNGETNLKPGELVNVVIEHADEYDLWGSVL 466


>gi|256111519|ref|ZP_05452533.1| MiaB-like tRNA modifying enzyme YliG [Brucella melitensis bv. 3
           str. Ether]
 gi|265993015|ref|ZP_06105572.1| conserved hypothetical protein [Brucella melitensis bv. 3 str.
           Ether]
 gi|262763885|gb|EEZ09917.1| conserved hypothetical protein [Brucella melitensis bv. 3 str.
           Ether]
          Length = 437

 Score =  181 bits (458), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 152/464 (32%), Positives = 225/464 (48%), Gaps = 47/464 (10%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
            P+  FV S GC   + DS R+     S+GYE     D ADL+++NTC   + A ++   
Sbjct: 3   APRVSFV-SLGCPKALVDSERIITGLRSEGYEISRKHDGADLVIVNTCGFLDSARDESLE 61

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +G   N       E G   V+V GC+  AE + I  R P V  + GPQ Y    E +  
Sbjct: 62  AIGLALN-------ENGK--VIVTGCLG-AEPDVIRERHPNVLAITGPQAY----ESVMN 107

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           A     V +      D F  L    G     R   A+L I EGC   C+FC++P  RG  
Sbjct: 108 A-----VHEVAPPAHDPFVDLVPPQGVKLTPRHY-AYLKISEGCSNRCSFCIIPALRGDL 161

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE-----------KCTFSDLL 251
           +SR +++V+ EA KLI  GV EI ++ Q+ +A+   GLD +           +  F DL 
Sbjct: 162 LSRPINEVLREAEKLIQAGVKEILVISQDTSAY---GLDIKYQEAMWQDRTVRTKFLDLS 218

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
             L E+   VR+ Y   +P       + A G +   +PYL +P Q  S  +LK+M R   
Sbjct: 219 RELGEMGVWVRMHYVYPYPHVDEVIPLMAEGKI---LPYLDIPFQHASPAVLKNMRRPAH 275

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
             +  + I   R   PD+A+ S FIVG+PGET++DF+  +D +D+    +A  FKY    
Sbjct: 276 QEKTSRRIQAWRETCPDLAVRSTFIVGYPGETEEDFQMLLDWLDEAKIERAGCFKYEAVK 335

Query: 372 GTPGSNM-LEQVDENVKAERLLCLQKKLREQQVSFN--DACVGQIIEVLIEKHGKEKGKL 428
           G   +++ LEQV E VK  R      K  +QQ+S N     VG+ + V+I++     GK 
Sbjct: 336 GAKANDLGLEQVPEEVKEARWHRFMAK--QQQISTNLLKKKVGKRLPVIIDEANGTIGKG 393

Query: 429 VGR--SPWLQ-SVVLNSKNH-NIGDIIKVRITDVKISTLYGELV 468
             R  +P +  SV ++S+    +GDI+ V+I       L+G  V
Sbjct: 394 RTRYDAPEIDGSVHISSRRPLRVGDIVTVKIEASDAYDLHGTAV 437


>gi|319404219|emb|CBI77812.1| putative enzyme [Bartonella rochalimae ATCC BAA-1498]
          Length = 437

 Score =  181 bits (458), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 147/463 (31%), Positives = 222/463 (47%), Gaps = 43/463 (9%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + P+  FV S GC   + DS R+     S+GYE  N    ADL+++NTC   + A ++  
Sbjct: 2   VAPRISFV-SLGCPKALVDSERIITRLRSEGYEISNKHKGADLVIVNTCGFIDSARKESL 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           + +       +  IK  G   V+V GC+  AE   IL+  P V  + GPQ Y    E + 
Sbjct: 61  ANI-------DEAIKNNGK--VIVTGCLG-AEPNIILQAHPNVLAITGPQDY----ESVI 106

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           RA     V      V D F  L  + G     R   A+L I EGC   C+FC++P  RG 
Sbjct: 107 RA-----VHTVIPPVHDPFLDLVPLQGIRLTPRHY-AYLKISEGCSNRCSFCIIPTLRGN 160

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDL 250
            ISR +S V+ EA KL+  GV E+ ++ Q+  A           W+ + +   K  F DL
Sbjct: 161 LISRPISDVLREAEKLVLAGVKELLVISQDTGAYGIDLKYAESVWQNRVI---KTKFLDL 217

Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
              L E+   VR+ Y   +P       + A G    ++PYL +P Q  S  +L++M R  
Sbjct: 218 CRELGEMGIWVRMHYVYPYPHIDEAIELMAAGK---ILPYLDIPFQHASPNVLRNMKRPA 274

Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370
              +  + I+R R + PD+ + S FIVGFPGET++DF   ++ +++    +A  FKY   
Sbjct: 275 HVEKISRRIERWREICPDLTLRSTFIVGFPGETNEDFNMLLEWLEEAKIERAGCFKYESV 334

Query: 371 LGTPGSNM-LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGK-EKGK 427
            G   +N+ LE + E VK +R      K ++         +G+ ++VLI E  GK  KG+
Sbjct: 335 KGAVANNLGLENIAEEVKEKRWHRFMTKQQKISAHLLKKKIGKRLQVLIDETQGKIAKGR 394

Query: 428 LVGRSPWLQSVVLNS--KNHNIGDIIKVRITDVKISTLYGELV 468
               SP +  VV  S  K   IG+ +  +I       LYG ++
Sbjct: 395 SKYDSPEIDGVVHISSRKPLRIGEFVTAKIEQSDSYDLYGNVI 437


>gi|257451722|ref|ZP_05617021.1| hypothetical protein F3_01564 [Fusobacterium sp. 3_1_5R]
 gi|317058281|ref|ZP_07922766.1| radical SAM-superfamily protein [Fusobacterium sp. 3_1_5R]
 gi|313683957|gb|EFS20792.1| radical SAM-superfamily protein [Fusobacterium sp. 3_1_5R]
          Length = 444

 Score =  181 bits (458), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 127/441 (28%), Positives = 227/441 (51%), Gaps = 32/441 (7%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           F + S GC  N+ DS  +  +  + +G++  N +++ADL+++NTC     A ++    + 
Sbjct: 3   FALISLGCSKNLVDSENLTGILVNRKGFQLTNEIEEADLVLINTCGFIGDAKKESIETIL 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +   K  R+K+     +VV GC+AQ   EE+L+  P ++ V+G     ++  +++    
Sbjct: 63  EVAEYKQERLKK-----IVVCGCLAQRYAEELLQEIPEIDAVIGTGEIDKIESVVDEILQ 117

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGV---TAFLTIQEGCDKFCTFCVVPYTRGIE 202
            K+ V+T       F  L   D   +R       TA+L I EGC++ CT+C++P  RG  
Sbjct: 118 DKKAVETS-----SFHFLPNADT--DRVLTTPPHTAYLKISEGCNRRCTYCIIPQLRGDL 170

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE-KCTFSDLLYSLSEIKGLV 261
            SR+   +++EA++L+  GV E+ LL Q    +   G+D   K    DLL  L +I+GL 
Sbjct: 171 RSRTKEDILEEAKRLVSGGVRELNLLAQETTEY---GIDNYGKKALPDLLRELVKIEGLD 227

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
            +R     PR ++D LI+     + +  Y  +P+Q  S  +L+ M R  T  + ++++ +
Sbjct: 228 WIRTYYMFPRSITDELIEVMKQEEKICKYFDIPIQHISSNMLRRMGRAITGEQTKELLYK 287

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           IR   P+    +  IVGFPGET+++F+   D V++  +     F+YS    T    M  Q
Sbjct: 288 IRKEIPEAVFRTSLIVGFPGETEEEFQELKDFVEEFQFDYIGVFQYSREEDTVAYTMENQ 347

Query: 382 VDENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-----KGKLVGRSP 433
           + E VK  R   ++ LQ ++ E   S N   +G+ +EVLI+    E     +G+L  ++ 
Sbjct: 348 IPEEVKERRQAEIINLQNEIAE---SKNRKLLGREVEVLIDGISSESEYMLEGRLKTQAL 404

Query: 434 WLQSVVLNSK-NHNIGDIIKV 453
            +   VL S+    +G+++++
Sbjct: 405 DIDGKVLTSEGTAQVGEMVRI 425


>gi|187933390|ref|YP_001885483.1| hypothetical protein CLL_A1285 [Clostridium botulinum B str. Eklund
           17B]
 gi|238065363|sp|B2TJ67|RIMO_CLOBB RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|187721543|gb|ACD22764.1| conserved hypothetical protein [Clostridium botulinum B str. Eklund
           17B]
          Length = 446

 Score =  181 bits (458), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 132/436 (30%), Positives = 226/436 (51%), Gaps = 28/436 (6%)

Query: 31  SYGCQMNVYDS-LRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRN 89
           S GC  N  DS + +  M  S  YE  N+  +AD+I++NTC   E A ++    +  +  
Sbjct: 10  SLGCDKNRVDSEIILGKM--SNEYEITNNAKEADVIIVNTCGFIESAKQESIDTILEMAE 67

Query: 90  LKNS-RIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
            KN+ + K     L++  GC+ Q  G+E+    P +++++G   Y ++ ++++    G +
Sbjct: 68  YKNNYKCK-----LLIATGCLIQRYGDELKNLIPEIDIMLGVNDYNKIDKVIKEFIEGNK 122

Query: 149 VVDT--DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
                 +YS E+  E   I+       +  +A++ I EGC+ FCT+C++P  RG   SR 
Sbjct: 123 EASKLLNYSDENINEGNRIL-----TTQKESAYIRIAEGCNNFCTYCIIPKIRGKFRSRR 177

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
           +  ++ EA  L   GV E+ L+ Q+   + G  + G+K     LL  LS+I+G+  +R  
Sbjct: 178 MENIISEATDLASQGVKELILIAQDTTQY-GSDIYGKK-NLHVLLKELSKIEGIKWIRVL 235

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
             +P  + D LI+     + ++ YL +P+Q  SD +LK M R+ +  +    I+++R   
Sbjct: 236 YCYPEAIYDELIEEIAVNEKVVKYLDIPIQHISDHVLKLMGRKTSKKDITDKIEKLRKSI 295

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           P+I I + FIVGFP ET +DF   ++ + +    +   FKYS    TP S M  Q+DE +
Sbjct: 296 PNIIIRTTFIVGFPQETQEDFEEILEFLQEYKLDKVGVFKYSREEDTPASKMDGQIDEAI 355

Query: 387 KAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE--KGKLVGRSPWLQSVVL- 440
           K ER   L+  Q+K+       N   V +  ++LIE++  E  KG+    +P +   V  
Sbjct: 356 KKEREEKLMLSQEKISN---DINKLKVNKKYDILIEEYDGEFYKGRNFEMAPDIDGNVFF 412

Query: 441 -NSKNHNIGDIIKVRI 455
            + KN  IG+ +KV+I
Sbjct: 413 ESPKNLEIGEFVKVKI 428


>gi|85858115|ref|YP_460317.1| tRNA 2-methylthioadenine synthetase -like protein [Syntrophus
           aciditrophicus SB]
 gi|123725210|sp|Q2LQ68|RIMO_SYNAS RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|85721206|gb|ABC76149.1| tRNA 2-methylthioadenine synthetase -like protein [Syntrophus
           aciditrophicus SB]
          Length = 453

 Score =  181 bits (458), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 125/399 (31%), Positives = 196/399 (49%), Gaps = 22/399 (5%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           + S GC  N+ DS  M  +    G   V+  ++AD+++LNTC     A E+    + R+ 
Sbjct: 8   IVSLGCPKNLIDSEVMAALLEQAGCRIVSGPEEADILLLNTCAFILPAREESIDEIFRLA 67

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG----PQTYYRLPELLERAR 144
             K    K G    ++V GC+ Q  G E+    P V++ +G    P     L  L+E   
Sbjct: 68  EWK----KAGKCRHLIVTGCLPQRYGAELAAELPEVDLFLGISEVPNIADHLRVLMEGKH 123

Query: 145 FGK-RVVDTDYSVEDKFERLSIVDGGYNR---KRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
             K RV+ T+         L ++D G+ R       +A+L I EGC   C++C++P  RG
Sbjct: 124 SEKNRVIVTN--------PLFLMDAGHPRLLSTPPYSAYLKIAEGCSNRCSYCIIPRLRG 175

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
              SR +  ++ EA  L+D GV E+ L+ Q+  A+ G+ L+G K T + LL  L+ +  L
Sbjct: 176 KARSRPIEDILREAEDLVDRGVRELILVAQDTTAY-GRDLEG-KPTLALLLRELAGLNTL 233

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
             +R   ++P  ++D L+    + D +  YL +P+Q   D IL +M RR  ++  R  ++
Sbjct: 234 AWIRILYTYPTGLTDELLNVIANQDRICSYLDVPIQHIDDDILAAMKRRGDSHLIRNSLE 293

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           R R+V PD+A+ +  I GFPGET   F   +  V +  +     F YSP  GTP   +  
Sbjct: 294 RARAVIPDLALRTSLITGFPGETPAKFHRLIAFVQETRFDHLGVFPYSPEEGTPAEKLPR 353

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419
           QV +  K  R   L ++        N   VG + EVLIE
Sbjct: 354 QVSQRTKETRRNLLMEEQAVISHEINQTLVGSLQEVLIE 392


>gi|17989048|ref|NP_541681.1| ribosomal protein S12 methylthiotransferase [Brucella melitensis
           bv. 1 str. 16M]
 gi|23500310|ref|NP_699750.1| ribosomal protein S12 methylthiotransferase [Brucella suis 1330]
 gi|62317576|ref|YP_223429.1| ribosomal protein S12 methylthiotransferase [Brucella abortus bv. 1
           str. 9-941]
 gi|83269558|ref|YP_418849.1| ribosomal protein S12 methylthiotransferase [Brucella melitensis
           biovar Abortus 2308]
 gi|161620628|ref|YP_001594514.1| MiaB-like tRNA modifying enzyme YliG [Brucella canis ATCC 23365]
 gi|163844718|ref|YP_001622373.1| MiaB-like tRNA modifying enzyme YliG [Brucella suis ATCC 23445]
 gi|189022831|ref|YP_001932572.1| elongator protein 3 [Brucella abortus S19]
 gi|225629061|ref|ZP_03787094.1| MiaB-like tRNA modifying enzyme YliG [Brucella ceti str. Cudo]
 gi|225686353|ref|YP_002734325.1| ribosomal protein S12 methylthiotransferase [Brucella melitensis
           ATCC 23457]
 gi|237817125|ref|ZP_04596117.1| MiaB-like tRNA modifying enzyme YliG [Brucella abortus str. 2308 A]
 gi|254691075|ref|ZP_05154329.1| MiaB-like tRNA modifying enzyme YliG [Brucella abortus bv. 6 str.
           870]
 gi|254695619|ref|ZP_05157447.1| MiaB-like tRNA modifying enzyme YliG [Brucella abortus bv. 3 str.
           Tulya]
 gi|254698860|ref|ZP_05160688.1| MiaB-like tRNA modifying enzyme YliG [Brucella abortus bv. 2 str.
           86/8/59]
 gi|254699805|ref|ZP_05161633.1| MiaB-like tRNA modifying enzyme YliG [Brucella suis bv. 5 str. 513]
 gi|254702941|ref|ZP_05164769.1| MiaB-like tRNA modifying enzyme YliG [Brucella suis bv. 3 str. 686]
 gi|254705940|ref|ZP_05167768.1| MiaB-like tRNA modifying enzyme YliG [Brucella pinnipedialis
           M163/99/10]
 gi|254711165|ref|ZP_05172976.1| MiaB-like tRNA modifying enzyme YliG [Brucella pinnipedialis B2/94]
 gi|254732307|ref|ZP_05190885.1| MiaB-like tRNA modifying enzyme YliG [Brucella abortus bv. 4 str.
           292]
 gi|256015342|ref|YP_003105351.1| MiaB-like tRNA modifying enzyme YliG [Brucella microti CCM 4915]
 gi|256029546|ref|ZP_05443160.1| MiaB-like tRNA modifying enzyme YliG [Brucella pinnipedialis
           M292/94/1]
 gi|256043459|ref|ZP_05446388.1| MiaB-like tRNA modifying enzyme YliG [Brucella melitensis bv. 1
           str. Rev.1]
 gi|256256260|ref|ZP_05461796.1| MiaB-like tRNA modifying enzyme YliG [Brucella abortus bv. 9 str.
           C68]
 gi|256262509|ref|ZP_05465041.1| elongator protein 3 [Brucella melitensis bv. 2 str. 63/9]
 gi|260167364|ref|ZP_05754175.1| MiaB-like tRNA modifying enzyme YliG [Brucella sp. F5/99]
 gi|260544814|ref|ZP_05820635.1| elongator protein 3 [Brucella abortus NCTC 8038]
 gi|260564657|ref|ZP_05835142.1| elongator protein 3 [Brucella melitensis bv. 1 str. 16M]
 gi|260568147|ref|ZP_05838616.1| elongator protein 3 [Brucella suis bv. 4 str. 40]
 gi|260756671|ref|ZP_05869019.1| conserved hypothetical protein [Brucella abortus bv. 6 str. 870]
 gi|260760102|ref|ZP_05872450.1| conserved hypothetical protein [Brucella abortus bv. 4 str. 292]
 gi|260763340|ref|ZP_05875672.1| conserved hypothetical protein [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260882488|ref|ZP_05894102.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68]
 gi|261216018|ref|ZP_05930299.1| conserved hypothetical protein [Brucella abortus bv. 3 str. Tulya]
 gi|261313369|ref|ZP_05952566.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10]
 gi|261318757|ref|ZP_05957954.1| conserved hypothetical protein [Brucella pinnipedialis B2/94]
 gi|261750275|ref|ZP_05993984.1| conserved hypothetical protein [Brucella suis bv. 5 str. 513]
 gi|261753547|ref|ZP_05997256.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686]
 gi|261756772|ref|ZP_06000481.1| elongator protein 3 [Brucella sp. F5/99]
 gi|265986555|ref|ZP_06099112.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1]
 gi|265989879|ref|ZP_06102436.1| conserved hypothetical protein [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|297249616|ref|ZP_06933317.1| MiaB-like tRNA modifying enzyme YliG [Brucella abortus bv. 5 str.
           B3196]
 gi|75495559|sp|Q577W6|RIMO_BRUAB RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|81751333|sp|Q8FW94|RIMO_BRUSU RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|81850351|sp|Q8YC29|RIMO_BRUME RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|123754492|sp|Q2YKI5|RIMO_BRUA2 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|238065297|sp|B2SB89|RIMO_BRUA1 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|238065298|sp|A9MBK6|RIMO_BRUC2 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|238065300|sp|A9WYN5|RIMO_BRUSI RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|17984890|gb|AAL53945.1| fe-s oxidoreductase [Brucella melitensis bv. 1 str. 16M]
 gi|23463922|gb|AAN33755.1| conserved hypothetical protein TIGR01125 [Brucella suis 1330]
 gi|62197769|gb|AAX76068.1| conserved hypothetical protein TIGR01125 [Brucella abortus bv. 1
           str. 9-941]
 gi|82939832|emb|CAJ12840.1| Protein of unknown function UPF0004:Conserved hypothetical protein
           1125:Elongator protein 3/MiaB/NifB:Radical SAM [Brucella
           melitensis biovar Abortus 2308]
 gi|161337439|gb|ABX63743.1| MiaB-like tRNA modifying enzyme YliG [Brucella canis ATCC 23365]
 gi|163675441|gb|ABY39551.1| MiaB-like tRNA modifying enzyme YliG [Brucella suis ATCC 23445]
 gi|189021405|gb|ACD74126.1| elongator protein 3 [Brucella abortus S19]
 gi|225615557|gb|EEH12606.1| MiaB-like tRNA modifying enzyme YliG [Brucella ceti str. Cudo]
 gi|225642458|gb|ACO02371.1| MiaB-like tRNA modifying enzyme YliG [Brucella melitensis ATCC
           23457]
 gi|237787938|gb|EEP62154.1| MiaB-like tRNA modifying enzyme YliG [Brucella abortus str. 2308 A]
 gi|255998002|gb|ACU49689.1| MiaB-like tRNA modifying enzyme YliG [Brucella microti CCM 4915]
 gi|260098085|gb|EEW81959.1| elongator protein 3 [Brucella abortus NCTC 8038]
 gi|260152300|gb|EEW87393.1| elongator protein 3 [Brucella melitensis bv. 1 str. 16M]
 gi|260154812|gb|EEW89893.1| elongator protein 3 [Brucella suis bv. 4 str. 40]
 gi|260670420|gb|EEX57360.1| conserved hypothetical protein [Brucella abortus bv. 4 str. 292]
 gi|260673761|gb|EEX60582.1| conserved hypothetical protein [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260676779|gb|EEX63600.1| conserved hypothetical protein [Brucella abortus bv. 6 str. 870]
 gi|260872016|gb|EEX79085.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68]
 gi|260917625|gb|EEX84486.1| conserved hypothetical protein [Brucella abortus bv. 3 str. Tulya]
 gi|261297980|gb|EEY01477.1| conserved hypothetical protein [Brucella pinnipedialis B2/94]
 gi|261302395|gb|EEY05892.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10]
 gi|261736756|gb|EEY24752.1| elongator protein 3 [Brucella sp. F5/99]
 gi|261740028|gb|EEY27954.1| conserved hypothetical protein [Brucella suis bv. 5 str. 513]
 gi|261743300|gb|EEY31226.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686]
 gi|263000548|gb|EEZ13238.1| conserved hypothetical protein [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|263092245|gb|EEZ16542.1| elongator protein 3 [Brucella melitensis bv. 2 str. 63/9]
 gi|264658752|gb|EEZ29013.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1]
 gi|297173485|gb|EFH32849.1| MiaB-like tRNA modifying enzyme YliG [Brucella abortus bv. 5 str.
           B3196]
 gi|326410721|gb|ADZ67785.1| elongator protein 3 [Brucella melitensis M28]
 gi|326554014|gb|ADZ88653.1| elongator protein 3 [Brucella melitensis M5-90]
          Length = 437

 Score =  181 bits (458), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 151/464 (32%), Positives = 225/464 (48%), Gaps = 47/464 (10%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
            P+  FV S GC   + DS R+     S+GYE     D ADL+++NTC   + A ++   
Sbjct: 3   APRVSFV-SLGCPKALVDSERIITGLRSEGYEISRKHDGADLVIVNTCGFLDSARDESLE 61

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +G   N       E G   V+V GC+  AE + I  R P V  + GPQ Y    E +  
Sbjct: 62  AIGLALN-------ENGK--VIVTGCLG-AEPDVIRERHPNVLAITGPQAY----ESVMN 107

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           A     V +      D F  L    G     R   A+L I EGC   C+FC++P  RG  
Sbjct: 108 A-----VHEVAPPAHDPFVDLVPPQGVKLTPRHY-AYLKISEGCSNRCSFCIIPALRGDL 161

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE-----------KCTFSDLL 251
           +SR +++V+ EA KL+  GV EI ++ Q+ +A+   GLD +           +  F DL 
Sbjct: 162 VSRPINEVLREAEKLVQAGVKEILVISQDTSAY---GLDIKYQEAMWQDRTVRTKFLDLS 218

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
             L E+   VR+ Y   +P       + A G +   +PYL +P Q  S  +LK+M R   
Sbjct: 219 RELGEMGVWVRMHYVYPYPHVDEVIPLMAEGKI---LPYLDIPFQHASPAVLKNMRRPAH 275

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
             +  + I   R   PD+A+ S FIVG+PGET++DF+  +D +D+    +A  FKY    
Sbjct: 276 QEKTSRRIQAWRETCPDLAVRSTFIVGYPGETEEDFQMLLDWLDEAKIERAGCFKYEAVK 335

Query: 372 GTPGSNM-LEQVDENVKAERLLCLQKKLREQQVSFN--DACVGQIIEVLIEKHGKEKGKL 428
           G   +++ LEQV E VK  R      K  +QQ+S N     VG+ + V+I++     GK 
Sbjct: 336 GAKANDLGLEQVPEEVKEARWHRFMAK--QQQISTNLLKKKVGKRLPVIIDEANGTIGKG 393

Query: 429 VGR--SPWLQ-SVVLNSKNH-NIGDIIKVRITDVKISTLYGELV 468
             R  +P +  SV ++S+    +GDI+ V+I       L+G  V
Sbjct: 394 RTRYDAPEIDGSVHISSRRPLRVGDIVTVKIEASDAYDLHGTAV 437


>gi|259417985|ref|ZP_05741904.1| conserved hypothetical protein [Silicibacter sp. TrichCH4B]
 gi|259346891|gb|EEW58705.1| conserved hypothetical protein [Silicibacter sp. TrichCH4B]
          Length = 419

 Score =  181 bits (458), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 128/442 (28%), Positives = 210/442 (47%), Gaps = 38/442 (8%)

Query: 30  KSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRN 89
           + +GC++N Y++  M  +    G E        + +V+NTC +  +A  K    + ++R 
Sbjct: 6   RPFGCRLNAYETEAMNPLSRQAGLE--------NAVVVNTCAVTAEAVRKARQEIRKLR- 56

Query: 90  LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVV-----VGPQTYYRL---PELLE 141
                 ++  D  ++V GC AQ E E     S +  V+     + P+T+ R+   P+ + 
Sbjct: 57  ------RDNPDAPIIVTGCAAQTEPETFAAMSEVTQVIGNTEKMQPETWQRMAKGPDFIG 110

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
                K +VD   SV +    L  +DG   R R   A++ +Q GCD  CTFC++PY RG 
Sbjct: 111 TTE--KVLVDDIMSVTETASHL--IDGFGTRSR---AYVQVQNGCDHRCTFCIIPYGRGN 163

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
             S     VVD+ ++L+D G  E+ L G ++ +W G  L         ++  L  +  L 
Sbjct: 164 SRSVPAGVVVDQIKRLVDRGYNEVVLTGVDLTSW-GADLPATPKLGDLVMRILKLVPDLP 222

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           RLR ++    ++ + L++A      LMP+LHL +Q G D ILK M RRH   +  +  + 
Sbjct: 223 RLRISSIDSIEVDENLMQAIATEPRLMPHLHLSLQHGDDLILKRMKRRHLRDDAIRFAED 282

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
            R +RP++   +D I GFP ET+  F  ++ LV +        F YS R GTP + +  Q
Sbjct: 283 ARKLRPEMTFGADIIAGFPTETEAHFENSLKLVTECDLTWLHVFPYSKREGTPAAKIPSQ 342

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           V+ NV  +R   L+ K   Q        +G+   VL+E         +GR+     V   
Sbjct: 343 VNGNVIKDRAARLRAKGDAQVAKHLSQQLGRQHNVLMENPN------MGRTEQFTEVSFA 396

Query: 442 SKNHNIGDIIKVRITDVKISTL 463
           +     G +I+ RIT ++ + L
Sbjct: 397 TPQIE-GALIQTRITGIQGTQL 417


>gi|226326854|ref|ZP_03802372.1| hypothetical protein PROPEN_00714 [Proteus penneri ATCC 35198]
 gi|225204691|gb|EEG87045.1| hypothetical protein PROPEN_00714 [Proteus penneri ATCC 35198]
          Length = 442

 Score =  181 bits (458), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 134/465 (28%), Positives = 234/465 (50%), Gaps = 49/465 (10%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           VP+  FV S GC  N+ DS R+     ++GY+ V + +DADL+++NTC   + A ++   
Sbjct: 7   VPKIGFV-SLGCPKNLVDSERILTELRTEGYQVVPTYNDADLVIVNTCGFIDSAVQESLE 65

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +G         + E G   V+V GC+   E + I    P V  + GP +Y ++      
Sbjct: 66  AIGE-------ALDENGK--VIVTGCLGAKENQ-IREVHPKVLEITGPHSYEQV-----L 110

Query: 143 ARFGKRVVDTDYSVEDKFERLSIV-DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           +     V   D++       LS+V + G        A+L I EGC+  CTFC++P  RG 
Sbjct: 111 SHIHHYVPKPDHN-----PFLSLVPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGD 165

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDL 250
             SR + +V+ EA++L++ GV E+ ++ Q+ +A           W G  +   K +   L
Sbjct: 166 LDSRPIGEVLGEAKRLVNAGVKELLVISQDTSAYGVDTKHQTGFWDGMPV---KTSMVSL 222

Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
              L+++   VRL Y   +P       + A G +   +PYL +P+Q  S +ILK M R  
Sbjct: 223 CEQLAKLGIWVRLHYVYPYPHVDDVIPLMAEGKI---LPYLDIPLQHASPKILKLMKRPG 279

Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370
           +     + + R R + P++ + S FIVGFPGET++DF+  +D + +    +   FKYSP 
Sbjct: 280 SVERTLERVKRWREICPELTLRSTFIVGFPGETEEDFQMLLDFLTEARLDRVGCFKYSPV 339

Query: 371 LGTPGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-- 425
            G   + + +QV E VK E   R + LQ+++  +++      +G+++ V+I++  +E   
Sbjct: 340 DGAKANELADQVPEEVKEERYHRFMQLQQQISTERLQEK---IGKVLLVMIDEVDEEGAI 396

Query: 426 GKLVGRSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468
           G+ +  +P +   V  ++  ++  G I++V I       L+G +V
Sbjct: 397 GRSMADAPEIDGAVYLNEQFDVEPGQIVRVLIEHADEYDLWGTIV 441


>gi|237742211|ref|ZP_04572692.1| Fe-S oxidoreductase [Fusobacterium sp. 4_1_13]
 gi|229429859|gb|EEO40071.1| Fe-S oxidoreductase [Fusobacterium sp. 4_1_13]
          Length = 435

 Score =  181 bits (458), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 131/449 (29%), Positives = 225/449 (50%), Gaps = 40/449 (8%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  +++    +GYE V   D +D+ ++N+C +   A  K  + L R + +
Sbjct: 11  TLGCKVNQYETESIKNQLIKRGYEEVPFEDKSDIYIINSCTVTSIADRKTRNMLRRAKKI 70

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILR------------RSPIVNVVVGPQTYYRLPE 138
                    D  V+V GC AQ    EIL             +S IVN V   +       
Sbjct: 71  -------NPDAKVIVTGCYAQTNSREILEIEDVDFVIDNKNKSNIVNFVGAIEDIS---- 119

Query: 139 LLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
             ER + G    + +Y  E +F  L         +    A++ IQ+GC+ FC++C +P+ 
Sbjct: 120 -FEREKNGNIFQEKEYQ-EYEFATL---------REMTRAYVKIQDGCNHFCSYCKIPFA 168

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258
           RG   SR    ++ E  KL+++G  E+ L+G +++A+ GK    EK  F  LL  + +IK
Sbjct: 169 RGKSRSRKKENILKEIEKLVEDGFKEVILIGIDLSAY-GKDF-KEKDNFESLLEEILKIK 226

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
            L R+R  + +P  ++D  I+   + + LMP+LH+ +QS  D +LK+M R + +   R+ 
Sbjct: 227 DLKRVRIGSVYPDKITDRFIELFKNKN-LMPHLHISLQSCDDTVLKNMRRNYGSSLIRES 285

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           + +++S   ++  ++D IVGFP E +  F+ T D++ +I ++    F+YS R GT  SNM
Sbjct: 286 LLKLKSKVENMEFTADVIVGFPKEDEIMFQNTHDVIKEIEFSGLHIFQYSDREGTIASNM 345

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSV 438
             +VD   K +R   L    +E  ++     + + +EVL+E+   + G+  G S     V
Sbjct: 346 DGKVDAKTKKQRADRLDSLKQEMILNSRKKYLEKSLEVLVEEE--KDGEYFGYSQNYLRV 403

Query: 439 VLNSKNHN-IGDIIKVRITDVKISTLYGE 466
              S   N +  +I V+I  VK   L  E
Sbjct: 404 KFRSDKKNLVNKLINVKIKCVKNDILIAE 432


>gi|229521686|ref|ZP_04411104.1| ribosomal protein S12p Asp88 methylthiotransferase [Vibrio cholerae
           TM 11079-80]
 gi|229341280|gb|EEO06284.1| ribosomal protein S12p Asp88 methylthiotransferase [Vibrio cholerae
           TM 11079-80]
          Length = 470

 Score =  181 bits (458), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 132/456 (28%), Positives = 225/456 (49%), Gaps = 46/456 (10%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ DS R+     ++GYE VNS  D+D++++NTC   + A ++    +G     
Sbjct: 39  SLGCPKNLVDSERILTQLRTEGYEIVNSYHDSDVVIVNTCGFIDSAVQESLDTIGEA--- 95

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               +KE G   V+V GC+   E +EI +  P V  + GP  Y  + E + +        
Sbjct: 96  ----LKENGK--VIVTGCLGARE-DEIRQVHPNVLGITGPHAYQNVLEHVHQY------- 141

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
                  + F  L + D G        A+L I EGC+  CTFC++P  RG  +SR + ++
Sbjct: 142 -APKPAHNPFTSL-VPDHGVKLTPKHYAYLKISEGCNHRCTFCIIPSMRGDLVSRPVGEI 199

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE-----------KCTFSDLLYSLSEIKG 259
           + EA +L + GV E+ ++ Q+ +A+   G+D +           +     L   L ++  
Sbjct: 200 IGEAERLKNAGVKELLVISQDTSAY---GVDTKHSLGFANGSPVRHNIKALSEELGKMGI 256

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
            VRL Y   +P       + A G +   +PYL +P Q  S R+LK M R   A    + I
Sbjct: 257 WVRLHYVYPYPHVDEIIPLMAEGKV---LPYLDIPFQHASPRVLKMMKRPGQAERTLERI 313

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            + R + P++ I S FIVGFPGET++DF+  +D + +    +   FKYSP  G   + + 
Sbjct: 314 KKWREICPELVIRSTFIVGFPGETEEDFQILLDWLKEAQLDRVGCFKYSPVEGAAANEIE 373

Query: 380 EQVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPW 434
           EQ+ E+VK    ER + +Q+++   ++      +G  ++VL+++  +E   G+    +P 
Sbjct: 374 EQIPEDVKQDRFERFMLVQQEISAAKLQKR---IGSTMQVLVDEVDEEGAIGRTYADAPE 430

Query: 435 LQSVV-LNSK-NHNIGDIIKVRITDVKISTLYGELV 468
           +  +V LN + N   G+++ V I       L+G ++
Sbjct: 431 IDGLVYLNGETNLKPGELVNVVIEHADEYDLWGSVL 466


>gi|159045769|ref|YP_001534563.1| MiaB-like tRNA modifying enzyme [Dinoroseobacter shibae DFL 12]
 gi|157913529|gb|ABV94962.1| MiaB-like tRNA modifying enzyme [Dinoroseobacter shibae DFL 12]
          Length = 416

 Score =  181 bits (458), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 139/439 (31%), Positives = 215/439 (48%), Gaps = 48/439 (10%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y+S  M +M  + G         +D +V+NTC +  +A  K    + R+R  
Sbjct: 8   TLGCRLNAYESEAMREMAEAAGL--------SDALVVNTCAVTAEAVRKSRQEIRRLR-- 57

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG------PQTYYRL-PELLERA 143
                ++  D  ++V GC AQ E  E     P V  V+G      P+T+  L P+L+ R 
Sbjct: 58  -----RDNPDAPIIVTGCAAQTE-PETFAAMPEVTRVLGNTEKMQPETWAALVPDLIGRT 111

Query: 144 RFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
              +RV VD   SV +    L  +DG + R R   A++ +Q GCD  CTFC++PY RG  
Sbjct: 112 ---ERVQVDDIMSVRETAGHL--IDG-FGRHR---AYVQVQNGCDHRCTFCIIPYGRGNS 162

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            S     VVD+ ++L+D G  E+ L G ++ +W G  L G       ++  L  +  L R
Sbjct: 163 RSVPAGVVVDQIKRLVDRGFNEVVLTGVDLTSW-GADLPGTPRLGDLVMRILRLVPDLPR 221

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LR ++    +  + L++A      LMP+LHL +Q+G D ILK M RRH   +     +  
Sbjct: 222 LRISSIDSIEADENLMRAIATEPRLMPHLHLSLQAGDDLILKRMKRRHLRDDAIAFCEEA 281

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R +RP++   +D I GFP ET+  F  ++ LV          F YSPR GTP + M    
Sbjct: 282 RRLRPEMTFGADIIAGFPTETEAMFENSLRLVTDCDLTWLHVFPYSPRKGTPAARMPAVP 341

Query: 383 DENVK--AERLLCLQKKLREQQVSFNDAC-VGQIIEVLIEKHGKEKGKLVGRSPWLQSVV 439
              +K  A RL    + L   QV+ + A   G+  ++LIE         +GR+     V 
Sbjct: 342 GAAIKDRAARL----RALGATQVARHLAAQQGRTHKILIES------PRLGRTEQFTEVA 391

Query: 440 LNSKNHNIGDIIKVRITDV 458
             +++H  G I++ RIT +
Sbjct: 392 F-AEDHPEGQIVEARITGI 409


>gi|153214874|ref|ZP_01949672.1| conserved hypothetical protein [Vibrio cholerae 1587]
 gi|229513543|ref|ZP_04403007.1| ribosomal protein S12p Asp88 methylthiotransferase [Vibrio cholerae
           TMA 21]
 gi|124115033|gb|EAY33853.1| conserved hypothetical protein [Vibrio cholerae 1587]
 gi|229349420|gb|EEO14376.1| ribosomal protein S12p Asp88 methylthiotransferase [Vibrio cholerae
           TMA 21]
          Length = 470

 Score =  181 bits (458), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 133/456 (29%), Positives = 224/456 (49%), Gaps = 46/456 (10%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ DS R+     ++GYE VNS  D+D++++NTC   + A ++    +G     
Sbjct: 39  SLGCPKNLVDSERILTQLRTEGYEIVNSYHDSDVVIVNTCGFIDSAVQESLDTIGEA--- 95

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               +KE G   V+V GC+   E +EI +  P V  + GP  Y  + E + +        
Sbjct: 96  ----LKENGK--VIVTGCLGARE-DEIRQVHPNVLGITGPHAYQNVLEHVHQY------- 141

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
                  + F  L + D G        A+L I EGC+  CTFC++P  RG  +SR + ++
Sbjct: 142 -APKPAHNPFTSL-VPDHGVKLTPKHYAYLKISEGCNHRCTFCIIPSMRGDLVSRPVGEI 199

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE-----------KCTFSDLLYSLSEIKG 259
           + EA +L + GV E+ ++ Q+ +A+   G+D +           +     L   L ++  
Sbjct: 200 IGEAERLKNAGVKELLVISQDTSAY---GVDTKHSLGFANGSPVRHNIKALSEELGKMGI 256

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
            VRL Y   +P       + A G +   +PYL +P Q  S R+LK M R   A    + I
Sbjct: 257 WVRLHYVYPYPHVDEIIPLMAEGKV---LPYLDIPFQHASPRVLKMMKRPGQAERTLERI 313

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            + R + P++ I S FIVGFPGET++DF+  +D + +    +   FKYSP  G   + + 
Sbjct: 314 KKWREICPELVIRSTFIVGFPGETEEDFQILLDWLKEAQLDRVGCFKYSPVEGAAANEIE 373

Query: 380 EQVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPW 434
           EQ+ E VK    ER + +Q+++   ++      +G  ++VLI++  +E   G+    +P 
Sbjct: 374 EQIPEEVKQDRFERFMLVQQEISAAKLQKR---IGSTMQVLIDEVDEEGAIGRTYADAPE 430

Query: 435 LQSVV-LNSK-NHNIGDIIKVRITDVKISTLYGELV 468
           +  +V LN + N   G+++ V I       L+G ++
Sbjct: 431 IDGLVYLNGETNLKPGELVNVVIEHADEYDLWGSVL 466


>gi|269792240|ref|YP_003317144.1| RNA modification enzyme, MiaB family [Thermanaerovibrio
           acidaminovorans DSM 6589]
 gi|269099875|gb|ACZ18862.1| RNA modification enzyme, MiaB family [Thermanaerovibrio
           acidaminovorans DSM 6589]
          Length = 439

 Score =  180 bits (457), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 124/398 (31%), Positives = 205/398 (51%), Gaps = 20/398 (5%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P RF V S+GC++N Y+                ++ ++AD +VL +C +  +A  K    
Sbjct: 4   PFRFKVISHGCRVNQYEG-DALAAELEAAGGIPSAPEEADCLVLVSCAVTAEAERKTRQE 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           L R++       +  G LLVV    V +   +++   S  V+V V       +P L+ER 
Sbjct: 63  LRRLKR------RSPGALLVVCGCWVNRVSDQDL--ESMGVDVAVSNGLKGTIPGLVERH 114

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             G  V     S    ++ LS+        R   AF+ +Q+GC + CT+C+VP  RG  I
Sbjct: 115 LHGFPVGGVYRSSAAGWDPLSL----RRTTRHTRAFVKVQDGCSRGCTYCIVPKLRGPSI 170

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR   +V+ E R L+++G  E+ L G ++  +R  GLD      +DL+ +LS ++GL R+
Sbjct: 171 SRPFQEVLSEVRSLVESGALEVVLTGVHLGDYRWDGLD-----LADLVRALSSVEGLGRI 225

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+ +  P  +S  L++A G     MP+LH+P+QSG D++L+ M R +   +Y +++ R R
Sbjct: 226 RFGSIEPFGLSQRLLEALGGSRSFMPHLHVPLQSGDDQVLRRMGRGYGGSDYVEMVRRAR 285

Query: 324 SV-RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
            V   D+ +S+D +VGFPGE    F  T+ ++++    +   F YSPR GT   +     
Sbjct: 286 QVLGDDLHVSADVMVGFPGEDQVAFDNTLRVLEEARVGRLHVFPYSPRPGTAAYHWPRPQ 345

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
           D+ V+ ER+  L +  R     F    VG+ + VL+E+
Sbjct: 346 DDTVR-ERVQRLLEFGRRSLGDFARGFVGREVRVLVER 382


>gi|326574032|gb|EGE23981.1| MiaB family tRNA modifying enzyme [Moraxella catarrhalis CO72]
          Length = 458

 Score =  180 bits (457), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 132/429 (30%), Positives = 212/429 (49%), Gaps = 43/429 (10%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  FV S GC   + DS R+      +GY+  N  D ADL+V+NTC   E A ++    
Sbjct: 10  PKIGFV-SLGCPKALVDSERIITELTYEGYQVANDYDGADLVVVNTCGFIESAVQESLDA 68

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G   N KN +        V+V GC+ + + E+I    P V  V G   Y  +   +   
Sbjct: 69  IGEAIN-KNGK--------VIVTGCLGK-DAEKIRTMHPAVLAVTGAHAYEEVISAVNH- 117

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
              K +   +Y  + K + ++  D G        A++ I EGC+  CTFC++P  RG  +
Sbjct: 118 HVPKPIKSKEY--DPKIDLIN--DAGIKLTPKHYAYVKISEGCNHRCTFCIIPSLRGDLV 173

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLY 252
           SR +  V+ EA  L  +GV E+ ++ Q+ +A           W G  L   K  F D+  
Sbjct: 174 SRPIDSVMKEAVALKKSGVKELLVISQDTSAYGVDLKYKTVFWEGWPL---KSKFYDMCE 230

Query: 253 SLSEIKGLVRLRYTTSHP------RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306
           ++S++   VRL Y   +P      + M+D +  + G +  L+PYL +P Q  S  +LK+M
Sbjct: 231 AMSKLGIWVRLHYVYPYPHVDAVVQIMADSMTASAG-MGGLLPYLDIPFQHASPNVLKAM 289

Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
            R   +    + I   R++ PDI I S F+VGFPGETD+DF   +D + K    +   F 
Sbjct: 290 KRPAMSENTLERIQAWRAICPDIVIRSTFVVGFPGETDEDFEYLLDWLTKARLDRVGCFT 349

Query: 367 YSPRLGTPGSNMLEQVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK 423
           YS   G   +++   V E+VK    ERL+ LQ+K+  ++++     VG+ + VL+++   
Sbjct: 350 YSEIEGAVANDLPNPVPESVKQSRYERLMALQQKISAEKLAEK---VGKTLVVLVDEIDT 406

Query: 424 EKGKLVGRS 432
           E+   + RS
Sbjct: 407 EENIAICRS 415


>gi|139439619|ref|ZP_01773032.1| Hypothetical protein COLAER_02059 [Collinsella aerofaciens ATCC
           25986]
 gi|133774960|gb|EBA38780.1| Hypothetical protein COLAER_02059 [Collinsella aerofaciens ATCC
           25986]
          Length = 449

 Score =  180 bits (457), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 136/469 (28%), Positives = 214/469 (45%), Gaps = 63/469 (13%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC  N  D+ RM  +  + GYE      DAD+ ++NTC     A  +       + N 
Sbjct: 12  TLGCAKNEVDTDRMRSLLTAAGYEEAFDPQDADIAIVNTCSFLASATSESIETTLELANE 71

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLP-ELLERARFGKRV 149
               ++      +V+ GCV    G++                   LP EL E A F K  
Sbjct: 72  VQDGVRS---CPIVMCGCVPSRYGDD-------------------LPDELPEVAAFVK-- 107

Query: 150 VDTDYSVEDKFERLSIVDG--GYNRK------------RGVTAFLTIQEGCDKFCTFCVV 195
                  +++   ++++DG  G  R+             G  A++ I +GC++FC+FC++
Sbjct: 108 ------ADEEDGIVAVIDGVLGVEREIAAYIPQVKRTVEGAVAYVKISDGCNRFCSFCMI 161

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL------DGEKCTFSD 249
           PY RG   SR+   ++ E R L+  GV EI L+GQ+   W G         DG     + 
Sbjct: 162 PYIRGRYHSRNSESIISEVRDLVAGGVREIVLIGQDTGIW-GTDFADEDVADGSPRNLAQ 220

Query: 250 LLYSLSEI--KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307
           LL +++E      V +R     P  M+D LI    D   ++PY+ +PVQ    RILK+M 
Sbjct: 221 LLRAVAEAVRPHNVWVRVLYLQPEGMTDELIDTIRDTPEVLPYIDIPVQHCDARILKAMR 280

Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           R  +  E   +   +R   P I I S  +VGFP ETDD+FR  +D +D +G+     F Y
Sbjct: 281 RSGSRQELEDLFRDLRERIPGIVIRSTAMVGFPTETDDEFRDLIDFMDTVGFDYTSVFAY 340

Query: 368 SPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE--KHGKEK 425
           S   G+  + M  QVDE VK ER             +   A VG+  +V+++  +  ++ 
Sbjct: 341 SREEGSLAAKMEGQVDEEVKLERAQEAMDLAESLGFAATAAHVGERAQVIVDGIEETEDG 400

Query: 426 GKLVGRSPWLQ------SVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            +L+G + W Q      +V L++   ++GDI+ V  TD     L G +V
Sbjct: 401 AELIGHA-WFQAPDSDGAVHLDASEASVGDILTVEFTDSFCYELIGHVV 448


>gi|326561181|gb|EGE11546.1| MiaB family tRNA modifying enzyme [Moraxella catarrhalis 7169]
 gi|326567931|gb|EGE18028.1| MiaB family tRNA modifying enzyme [Moraxella catarrhalis BC1]
          Length = 458

 Score =  180 bits (457), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 132/429 (30%), Positives = 212/429 (49%), Gaps = 43/429 (10%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  FV S GC   + DS R+      +GY+  N  D ADL+V+NTC   E A ++    
Sbjct: 10  PKIGFV-SLGCPKALVDSERIITELTYEGYQVANDYDGADLVVVNTCGFIESAVQESLDA 68

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G   N KN +        V+V GC+ + + E+I    P V  V G   Y  +   +   
Sbjct: 69  IGEAIN-KNGK--------VIVTGCLGK-DAEKIRTMHPAVLAVTGAHAYEEVISAVNH- 117

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
              K +   +Y  + K + ++  D G        A++ I EGC+  CTFC++P  RG  +
Sbjct: 118 HVPKPIKSKEY--DPKIDLIN--DAGIKLTPKHYAYVKISEGCNHRCTFCIIPSLRGDLV 173

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLY 252
           SR +  V+ EA  L  +GV E+ ++ Q+ +A           W G  L   K  F D+  
Sbjct: 174 SRPIDSVMKEAVALKKSGVKELLVISQDTSAYGVDLKYKTVFWEGWPL---KSKFYDMCE 230

Query: 253 SLSEIKGLVRLRYTTSHP------RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306
           ++S++   VRL Y   +P      + M+D +  + G +  L+PYL +P Q  S  +LK+M
Sbjct: 231 AMSKLGIWVRLHYVYPYPHVDAVVQIMADSMTASAG-MGGLLPYLDIPFQHASPNVLKAM 289

Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
            R   +    + I   R++ PDI I S F+VGFPGETD+DF   +D + K    +   F 
Sbjct: 290 KRPAMSENTLERIQAWRAICPDIVIRSTFVVGFPGETDEDFEYLLDWLTKARLDRVGCFT 349

Query: 367 YSPRLGTPGSNMLEQVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK 423
           YS   G   +++   V E+VK    ERL+ LQ+K+  ++++     VG+ + VL+++   
Sbjct: 350 YSEIEGAVANDLPNPVPESVKQSRYERLMALQQKISAEKLAEK---VGKTLVVLVDEIDT 406

Query: 424 EKGKLVGRS 432
           E+   + RS
Sbjct: 407 EENIAICRS 415


>gi|294637044|ref|ZP_06715359.1| RNA modification enzyme, MiaB-family [Edwardsiella tarda ATCC
           23685]
 gi|291089741|gb|EFE22302.1| RNA modification enzyme, MiaB-family [Edwardsiella tarda ATCC
           23685]
          Length = 446

 Score =  180 bits (457), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 140/468 (29%), Positives = 229/468 (48%), Gaps = 47/468 (10%)

Query: 19  DQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAE 78
           +Q   P+  F+ S GC  N+ DS R+     ++GY  V + +DADL+++NTC   + A +
Sbjct: 8   NQSRQPKIGFI-SLGCPKNLVDSERILTELRTEGYLVVPTYEDADLVIVNTCGFIDSAVQ 66

Query: 79  KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPE 138
           +    +G   N       E G   V+V GC+   E + I    P V  + GP +Y ++  
Sbjct: 67  ESLEAIGEALN-------ENGK--VIVTGCLGAKENQ-IREVHPKVLEISGPHSYEQV-- 114

Query: 139 LLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
                   K V    +   + F  L + + G        A+L I EGC+  C FC++P  
Sbjct: 115 ---LHHVHKYVAKPQH---NPFTSL-VPEQGVKLTPKHFAYLKISEGCNHRCAFCIIPSL 167

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTF 247
           RG   SR +  V+DEA++L D+GV E+ ++ Q+ +A           W G+ +   K + 
Sbjct: 168 RGDLESRPIGAVLDEAKRLADSGVKELLVISQDTSAYGADIQQRTGFWNGQPV---KTSM 224

Query: 248 SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307
             L   L+ +   VRL Y   +P       + A G L   +PYL +P+Q  S RILK M 
Sbjct: 225 LSLCEQLATLGVWVRLHYVYPYPHVDDVIPLMAAGKL---LPYLDIPLQHASPRILKLMK 281

Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           R        + I R R + P + + S FIVGFPGET++DF+  +D + +    +   F+Y
Sbjct: 282 RPGAVERTLERIKRWREICPQLTLRSTFIVGFPGETEEDFQMLLDFLREARLDRVGCFQY 341

Query: 368 SPRLGTPGSNMLEQVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE 424
           SP  G   + + +QV + VK    +R + LQ+++  +++      VG  + V+I++  +E
Sbjct: 342 SPVEGAAANALPDQVADEVKQARYDRFMQLQQQISAERLQEK---VGLTLPVIIDEVDEE 398

Query: 425 K--GKLVGRSPWLQSVV-LN-SKNHNIGDIIKVRITDVKISTLYGELV 468
              G+ +  +P +  VV LN  +N   GDI+ V I +V    ++G L 
Sbjct: 399 GAIGRSMADAPEIDGVVYLNGERNVKAGDIVNVTIENVDEYDMWGSLA 446


>gi|317132114|ref|YP_004091428.1| MiaB-like tRNA modifying enzyme [Ethanoligenens harbinense YUAN-3]
 gi|315470093|gb|ADU26697.1| MiaB-like tRNA modifying enzyme [Ethanoligenens harbinense YUAN-3]
          Length = 427

 Score =  180 bits (457), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 129/440 (29%), Positives = 218/440 (49%), Gaps = 22/440 (5%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  ME      G+E V   D AD+ ++N+C +  ++  K    L R++  
Sbjct: 7   TLGCKVNQYETQIMEQSLRDAGFEIVPPEDPADVFIVNSCTVTAESDRKTRQMLRRMK-- 64

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL-LERARFGKRV 149
                K     + V+ GC  QA  E+    +   +++ G +    + +L L+  R  +R+
Sbjct: 65  -----KRNPAAIAVLCGCYVQAAPEKAAAIA-EADIIAGVRDRGDIAKLILQSMREKERL 118

Query: 150 VDT-DYSVEDKFERLSIVD-GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
                +   + FE +      G+ R     AF+ I++GC  FCT+C++P++RG   S+  
Sbjct: 119 THVPSFEQGELFEPMQARGLEGHTR-----AFVKIEDGCRNFCTYCIIPFSRGPVRSKPP 173

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
            ++  E   L + G  E  L+G N++A+   G D  + T +D + +   + GL R+R  +
Sbjct: 174 EEITAELATLREQGYAEAVLVGINLSAY---GSDLGR-TLADAVDAAGRV-GLARIRLGS 228

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
             P  ++D  I        L P+ HL +QSG    L  MNRR+T   +   + R+RS  P
Sbjct: 229 LSPLAVTDEFITRAARCPSLCPHFHLSLQSGCVDTLARMNRRYTPDAFADTVHRLRSAFP 288

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
           D +I++D I GFPGET+++F  T+D V +IG++QA  F YS R GT  + M  QV +N++
Sbjct: 289 DCSITTDIIAGFPGETEEEFAQTLDFVKQIGFSQAHVFPYSRRDGTRAAAMDGQVPKNIR 348

Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNI 447
             R   L       Q +F    VG+ + VL E+   E G   G +P    V + +     
Sbjct: 349 ERRAHALISLCTRTQQAFRQRFVGRRVPVLFEQRA-ENGLWEGLTPQYVPVFVQADEDLH 407

Query: 448 GDIIKVRITDVKISTLYGEL 467
           G I  V + +++ +   G L
Sbjct: 408 GAIRNVYMEEIQAAGCLGRL 427


>gi|146302766|ref|YP_001197357.1| MiaB-like tRNA modifying enzyme [Flavobacterium johnsoniae UW101]
 gi|146157184|gb|ABQ08038.1| MiaB-like tRNA modifying enzyme [Flavobacterium johnsoniae UW101]
          Length = 444

 Score =  180 bits (457), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 126/422 (29%), Positives = 208/422 (49%), Gaps = 39/422 (9%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N  ++  +   F  +G++RV+  + AD+ V+NTC + E A ++    + +   L
Sbjct: 11  TLGCKLNFSETSTIARNFNDEGFDRVDFEEVADIYVINTCSVTENADKQFKQVVKKAMKL 70

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL---LERARFGK 147
                       V   GC AQ + EE L     V++V+G    +++ +    L +   G+
Sbjct: 71  NEK-------AFVAAVGCYAQLKPEE-LAAVDGVDLVLGATEKFKITDYIHDLSKNDMGE 122

Query: 148 ----RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
                + + D+ V           G Y+      AFL +Q+GCD  CT+C +P  RGI  
Sbjct: 123 VHSCEIAEADFYV-----------GSYSIGDRTRAFLKVQDGCDYKCTYCTIPLARGISR 171

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK---CTFSDLLYSLSEIKGL 260
           S +L  V+  A+++    + EI L G N+  + GKG  G K    TF DL+ +L ++ G+
Sbjct: 172 SDALENVLKNAKEISAQNIREIVLTGVNIGDY-GKGEFGNKKHEHTFLDLVQALDKVDGI 230

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            RLR ++  P  + +  I         +P+ H+P+QSGS+ ILK M RR+    Y   ++
Sbjct: 231 ERLRISSIEPNLLKNETIDFVSKSRTFVPHFHIPLQSGSNDILKLMKRRYLREVYIDRVN 290

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           +IR V P   I  D IVGFPGETD+ F  T   ++++  +    F YS R  T   +M  
Sbjct: 291 KIREVMPHACIGVDVIVGFPGETDEHFLETYHFLNELDISYLHVFTYSERDNTEAVDMPG 350

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG--------RS 432
            V  NV+A+R   L+    +++ +F ++ +G    VL E   KE G + G        ++
Sbjct: 351 VVPSNVRAKRSKMLRGLSVKKRRAFYESQLGTNRTVLFESENKE-GYIHGFTENYVKVKT 409

Query: 433 PW 434
           PW
Sbjct: 410 PW 411


>gi|326563981|gb|EGE14230.1| MiaB family tRNA modifying enzyme [Moraxella catarrhalis 103P14B1]
 gi|326567631|gb|EGE17739.1| MiaB family tRNA modifying enzyme [Moraxella catarrhalis 12P80B1]
 gi|326569488|gb|EGE19548.1| MiaB family tRNA modifying enzyme [Moraxella catarrhalis BC8]
 gi|326577001|gb|EGE26896.1| MiaB family tRNA modifying enzyme [Moraxella catarrhalis 101P30B1]
 gi|326577473|gb|EGE27357.1| MiaB family tRNA modifying enzyme [Moraxella catarrhalis O35E]
          Length = 458

 Score =  180 bits (457), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 132/429 (30%), Positives = 212/429 (49%), Gaps = 43/429 (10%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  FV S GC   + DS R+      +GY+  N  D ADL+V+NTC   E A ++    
Sbjct: 10  PKIGFV-SLGCPKALVDSERIITELTYEGYQVANDYDGADLVVVNTCGFIESAVQESLDA 68

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G   N KN +        V+V GC+ + + E+I    P V  V G   Y  +   +   
Sbjct: 69  IGEAIN-KNGK--------VIVTGCLGK-DAEKIRTMHPAVLAVTGAHAYEEVISAVNH- 117

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
              K +   +Y  + K + ++  D G        A++ I EGC+  CTFC++P  RG  +
Sbjct: 118 HVPKPIKSKEY--DPKIDLIN--DAGIKLTPKHYAYVKISEGCNHRCTFCIIPSLRGDLV 173

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLY 252
           SR +  V+ EA  L  +GV E+ ++ Q+ +A           W G  L   K  F D+  
Sbjct: 174 SRPIDSVMKEAVALKKSGVKELLVISQDTSAYGVDLKYKTVFWEGWPL---KSKFYDMCE 230

Query: 253 SLSEIKGLVRLRYTTSHP------RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306
           ++S++   VRL Y   +P      + M+D +  + G +  L+PYL +P Q  S  +LK+M
Sbjct: 231 AMSKLGIWVRLHYVYPYPHVDAVVQIMADSMTASAG-MGGLLPYLDIPFQHASPNVLKAM 289

Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
            R   +    + I   R++ PDI I S F+VGFPGETD+DF   +D + K    +   F 
Sbjct: 290 KRPAMSENTLERIQAWRAICPDIVIRSTFVVGFPGETDEDFEYLLDWLTKARLDRVGCFT 349

Query: 367 YSPRLGTPGSNMLEQVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK 423
           YS   G   +++   V E+VK    ERL+ LQ+K+  ++++     VG+ + VL+++   
Sbjct: 350 YSEIEGAVANDLPNPVPESVKQSRYERLMALQQKISAEKLAEK---VGKTLVVLVDEIDT 406

Query: 424 EKGKLVGRS 432
           E+   + RS
Sbjct: 407 EENIAICRS 415


>gi|308809858|ref|XP_003082238.1| Predicted Fe-S oxidoreductase (ISS) [Ostreococcus tauri]
 gi|116060706|emb|CAL57184.1| Predicted Fe-S oxidoreductase (ISS) [Ostreococcus tauri]
          Length = 481

 Score =  180 bits (457), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 131/425 (30%), Positives = 198/425 (46%), Gaps = 80/425 (18%)

Query: 119 RRSPIVNVVVGPQTYYRLPELLERAR-FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGV- 176
           R   I     GP     LP L++  R  G + ++   SVE+ +  +  V     R+ G  
Sbjct: 35  RGGSIAGHRAGPGCVSDLPNLIDAVRGTGAKAMNVQLSVEETYADIIPV-----REVGTH 89

Query: 177 TAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR 236
           +AF+TI  GCD  C FC+VPYTRG E SR L+ ++ E R L + G+ E+TLLGQNVN++ 
Sbjct: 90  SAFVTIMRGCDNACAFCIVPYTRGRERSRDLASIMYEIRSLSERGIKEVTLLGQNVNSYA 149

Query: 237 G------------------------------KGLDGEKCT-------------------- 246
           G                               GL G + +                    
Sbjct: 150 GDVTSATTRDFLSQLVGEDVDAVELVANASSAGLAGAQGSAFVGYADGFKSRYDPERKRE 209

Query: 247 ----FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
               F++LL  ++ +   +R+R+T+ HP+D  D +++   D   +   LH+P QSGS   
Sbjct: 210 GTIQFAELLDKVASVDPEMRIRFTSPHPKDFPDDVLRVIRDRPNVSKCLHMPAQSGSTAT 269

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           L+ M R +T   Y ++IDR+R + P  A+++D I GF GET+ D   T+ L+ +IGY QA
Sbjct: 270 LERMARGYTREAYIELIDRVRMIIPGCAVTTDIISGFCGETEADHEDTVSLMTRIGYEQA 329

Query: 363 FSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKH 421
           F F YS R GT    +  + V E+VK  RL  +    R +        +G    VL+E  
Sbjct: 330 FMFAYSEREGTGAHRHQKDDVPEDVKQRRLQEVIDAFRAKAGEKQRMEIGSTHCVLVEGP 389

Query: 422 GKEKG-KLVGR---SPWL--------------QSVVLNSKNHNIGDIIKVRITDVKISTL 463
            K+   +L G+   S W+              +S    S   + GD + VR+T     TL
Sbjct: 390 SKKNPEELTGKTDTSKWVIFDDAPTGSYAGDARSATTGSHRVSPGDYVAVRVTGCSTGTL 449

Query: 464 YGELV 468
           +GEL+
Sbjct: 450 FGELL 454


>gi|256845484|ref|ZP_05550942.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Fusobacterium sp.
           3_1_36A2]
 gi|256719043|gb|EEU32598.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Fusobacterium sp.
           3_1_36A2]
          Length = 435

 Score =  180 bits (457), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 131/449 (29%), Positives = 225/449 (50%), Gaps = 40/449 (8%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  +++    +GYE V   D +D+ ++N+C +   A  K  + L R + +
Sbjct: 11  TLGCKVNQYETESIKNQLIKRGYEEVPFEDKSDIYIINSCTVTSIADRKTRNMLRRAKKI 70

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILR------------RSPIVNVVVGPQTYYRLPE 138
                    D  V+V GC AQ    EIL             +S IVN V   +       
Sbjct: 71  -------NPDAKVIVTGCYAQTNSREILEIEDVDFVIDNKNKSNIVNFVGAIEDIS---- 119

Query: 139 LLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
             ER + G    + +Y  E +F  L         +    A++ IQ+GC+ FC++C +P+ 
Sbjct: 120 -FEREKNGNIFQEKEYQ-EYEFATL---------REMTRAYVKIQDGCNHFCSYCKIPFA 168

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258
           RG   SR    ++ E  KL+++G  E+ L+G +++A+ GK    EK  F  LL  + +IK
Sbjct: 169 RGKSRSRKKENILKEIEKLVEDGFKEVILIGIDLSAY-GKDF-KEKDNFESLLEEILKIK 226

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
            L R+R  + +P  ++D  I+   + + LMP+LH+ +QS  D +LK+M R + +   R+ 
Sbjct: 227 DLKRVRIGSVYPDKITDRFIELFKNKN-LMPHLHISLQSCDDTVLKNMRRNYGSSLIRES 285

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           + +++S   ++  ++D IVGFP E +  F+ T D++ +I ++    F+YS R GT  SNM
Sbjct: 286 LLKLKSKVENMEFTADVIVGFPKEDEIMFQNTHDVIKEIEFSGLHIFQYSDREGTIASNM 345

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSV 438
             +VD   K +R   L    +E  ++     + + +EVL+E+   + G+  G S     V
Sbjct: 346 DGKVDAKTKKQRADRLDSLKQEMILNSRKKYLEKNLEVLVEEE--KDGEYFGYSQNYLRV 403

Query: 439 VLNSKNHN-IGDIIKVRITDVKISTLYGE 466
              S   N +  +I V+I  VK   L  E
Sbjct: 404 KFRSDEKNLVNKLINVKIKCVKNDILIAE 432


>gi|153830055|ref|ZP_01982722.1| conserved hypothetical protein [Vibrio cholerae 623-39]
 gi|254226795|ref|ZP_04920368.1| conserved hypothetical protein [Vibrio cholerae V51]
 gi|262190834|ref|ZP_06049056.1| MiaB-like tRNA modifying enzyme YliG [Vibrio cholerae CT 5369-93]
 gi|125620688|gb|EAZ49049.1| conserved hypothetical protein [Vibrio cholerae V51]
 gi|148874454|gb|EDL72589.1| conserved hypothetical protein [Vibrio cholerae 623-39]
 gi|262033283|gb|EEY51799.1| MiaB-like tRNA modifying enzyme YliG [Vibrio cholerae CT 5369-93]
          Length = 470

 Score =  180 bits (457), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 133/456 (29%), Positives = 225/456 (49%), Gaps = 46/456 (10%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ DS R+     ++GYE VNS  D+D++++NTC   + A ++    +G     
Sbjct: 39  SLGCPKNLVDSERILTQLRTEGYEIVNSYHDSDVVIVNTCGFIDSAVQESLDTIGEA--- 95

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               +KE G   V+V GC+   E +EI +  P V  + GP  Y  + E + +        
Sbjct: 96  ----LKENGK--VIVTGCLGARE-DEIRQVHPNVLGITGPHAYQNVLEHVHQY------- 141

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
                  + F  L + D G        A+L I EGC+  CTFC++P  RG  +SR + ++
Sbjct: 142 -APKPAHNPFTSL-VPDHGVKLTPKHYAYLKISEGCNHRCTFCIIPSMRGDLVSRPVGEI 199

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE-----------KCTFSDLLYSLSEIKG 259
           + EA +L + GV E+ ++ Q+ +A+   G+D +           +     L   L ++  
Sbjct: 200 IGEAERLKNAGVKELLVISQDTSAY---GVDTKHSLGFANGSPVRHNIKALSEELGKMGI 256

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
            VRL Y   +P       + A G +   +PYL +P Q  S RILK M R   A    + I
Sbjct: 257 WVRLHYVYPYPHVDEIIPLMAEGKV---LPYLDIPFQHASPRILKMMKRPGQAERTLERI 313

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            + R + P++ I S FIVGFPGET++DF+  +D + +    +   FKYSP  G   + + 
Sbjct: 314 KKWREICPELVIRSTFIVGFPGETEEDFQILLDWLKEAQLDRVGCFKYSPVEGAAANEIE 373

Query: 380 EQVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPW 434
           +Q+ E+VK    ER + +Q+++   ++      +G  ++VLI++  +E   G+    +P 
Sbjct: 374 DQIPEDVKQDRFERFMLVQQEISAAKLQKR---IGSTMQVLIDEVDEEGAIGRTYADAPE 430

Query: 435 LQSVV-LNSK-NHNIGDIIKVRITDVKISTLYGELV 468
           +  +V LN + N   G+++ V I       L+G ++
Sbjct: 431 IDGLVYLNGETNLKPGELVNVVIEHADEYDLWGSVL 466


>gi|153010948|ref|YP_001372162.1| MiaB-like tRNA modifying enzyme YliG [Ochrobactrum anthropi ATCC
           49188]
 gi|238066603|sp|A6X529|RIMO_OCHA4 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|151562836|gb|ABS16333.1| MiaB-like tRNA modifying enzyme YliG [Ochrobactrum anthropi ATCC
           49188]
          Length = 437

 Score =  180 bits (457), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 147/461 (31%), Positives = 220/461 (47%), Gaps = 47/461 (10%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
            P+  FV S GC   + DS R+     S+GYE     D ADL+++NTC   + A ++   
Sbjct: 3   APRVSFV-SLGCPKALVDSERIITSLRSEGYEISRKHDGADLVIVNTCGFLDSARDESLD 61

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +G   N       E G   V+V GC+  AE + I  R P V  + GPQ Y  +   +  
Sbjct: 62  AIGLALN-------ENGK--VIVTGCLG-AEPDVIRERHPNVLAITGPQAYESVMSAVHE 111

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           A              D F  L    G     R   A+L I EGC   C+FC++P  RG  
Sbjct: 112 AV---------PPAHDPFVDLVPPQGVKLTPRHY-AYLKISEGCSNRCSFCIIPALRGDL 161

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE-----------KCTFSDLL 251
           +SR +  V+ EA KL++ GV EI ++ Q+ +A+   GLD +           +  F DL 
Sbjct: 162 VSRPIDSVLREAEKLVNAGVKEILVISQDTSAY---GLDIKYQEAMWQDRTVRTKFLDLS 218

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
             L ++   VR+ Y   +P       + A G +   +PYL +P Q  S  +LK+M R   
Sbjct: 219 RELGDMGVWVRMHYVYPYPHVDEVIPLMAEGKI---LPYLDIPFQHASPAVLKNMRRPAH 275

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
             +  + I   R   PD+A+ S FIVG+PGET++DF   +D +D+    +A  FKY P  
Sbjct: 276 QEKTSRRIQAWRETCPDLAVRSTFIVGYPGETEEDFEILLDWLDEAKIERAGCFKYEPVK 335

Query: 372 GTPGSNM-LEQVDENVKAERLLCLQKKLREQQVSFN--DACVGQIIEVLIEKHGKEKGKL 428
           G   +++ LEQV E +K  R      K  +QQ+S N     VG+ + V+I++     GK 
Sbjct: 336 GAKANDLGLEQVPEEIKEARWHRFMAK--QQQISTNLLKKKVGKRLPVIIDEANGTIGKG 393

Query: 429 VGR--SPWLQ-SVVLNSKNH-NIGDIIKVRITDVKISTLYG 465
             R  +P +  SV + S+    +GDI+ V+I       L+G
Sbjct: 394 RTRYDAPEIDGSVHIQSRRPLRVGDIVTVKIEASDAYDLHG 434


>gi|52426302|ref|YP_089439.1| MiaB protein [Mannheimia succiniciproducens MBEL55E]
 gi|81386470|sp|Q65QA6|RIMO_MANSM RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|52308354|gb|AAU38854.1| MiaB protein [Mannheimia succiniciproducens MBEL55E]
          Length = 448

 Score =  180 bits (457), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 133/467 (28%), Positives = 230/467 (49%), Gaps = 53/467 (11%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
            P   FV S GC  N+ DS R+     + GY  + + ++ADL+++NTC   + A ++   
Sbjct: 9   APNIGFV-SLGCPKNLVDSERILTELRTDGYNIIPTYENADLVIVNTCGFIDSAVQESLE 67

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +G         ++E G   V+V GC+   E + I    P V  + GP +Y  + E + +
Sbjct: 68  AIGEA-------LEENGK--VIVTGCLGAKENQ-IREVHPKVLEITGPHSYEAVMEHVHK 117

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
             +  R     Y+     + + +    Y       A+L I EGCD  CTFC++P  RG  
Sbjct: 118 --YVPRPERNPYTSLVPAQGVKLTPKHY-------AYLKISEGCDHKCTFCIIPSLRGDL 168

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNA---------------WRGKGLDGEKCTF 247
            SR ++QV+DEA++L+D+GV E+ ++ Q+ +A               W G  +     T 
Sbjct: 169 DSRPITQVLDEAKRLVDSGVKELLVVSQDTSAYALDQSKENQNKTVFWNGAPIKNNLIT- 227

Query: 248 SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307
             L   L  +   +RL Y   +P       + A G +   +PYL +P+Q  S ++LK+M 
Sbjct: 228 --LCRQLGTLGAWIRLHYVYPYPHVDDLIPLMAEGKI---LPYLDIPLQHASPKVLKAMK 282

Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           R  +     + I + R + P++ + S FIVGFPGET++DF+  +D + +    +   FK+
Sbjct: 283 RPGSVERVLERIQKWREICPELTLRSTFIVGFPGETEEDFQMLLDFLQEAQLDRVGCFKF 342

Query: 368 SPRLGTPGSNMLEQVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEV--LIEKHG 422
           SP  G   ++M +QV E VK    +R + LQ+++  Q++      +G+ + V        
Sbjct: 343 SPVEGAVATDMADQVPEEVKEQRFQRFMELQQQISAQRLQQK---IGKTLPVIIDDIDED 399

Query: 423 KEKGKLVGRSPWLQSVV-LNSKNHN---IGDIIKVRITDVKISTLYG 465
              G+ +  +P +  VV +++++ +   IGDII+V IT+     L+G
Sbjct: 400 GIIGRSMADAPEIDGVVYVDNRSESAVKIGDIIQVAITNADEYDLWG 446


>gi|325272756|ref|ZP_08139104.1| ribosomal protein S12 methylthiotransferase [Pseudomonas sp.
           TJI-51]
 gi|324102107|gb|EGB99605.1| ribosomal protein S12 methylthiotransferase [Pseudomonas sp.
           TJI-51]
          Length = 443

 Score =  180 bits (457), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 145/473 (30%), Positives = 231/473 (48%), Gaps = 65/473 (13%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  FV S GC   + DS R+      +GYE V + +DAD++V+NTC   + A  +    
Sbjct: 8   PKVGFV-SLGCPKALVDSERILTQLRMEGYEVVPTYEDADVVVVNTCGFIDSAKAESLEV 66

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G         IKE G   V+V GC+   EG  I    P V  V GPQ Y          
Sbjct: 67  IGEA-------IKENGK--VIVTGCMGVEEGN-IRDVHPSVLSVTGPQQY---------- 106

Query: 144 RFGKRVVDTDYSV----EDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
              ++VV+  + V    +D    + +V   G        A+L I EGC+  C+FC++P  
Sbjct: 107 ---EQVVNAVHEVVPPRQDHNPLIDLVPPQGVKLTPRHYAYLKISEGCNHSCSFCIIPSM 163

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTF 247
           RG  +SR + +V+ EA +L+  GV EI ++ Q+ +A           W G+ +   K   
Sbjct: 164 RGKLVSRPVGEVLSEAERLVKAGVKEILVISQDTSAYGVDVKYKTDFWNGRPV---KTRM 220

Query: 248 SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307
            +L  +LS +   VRL Y   +P       + A G    ++PYL +P Q  S ++LKSM 
Sbjct: 221 LELCEALSSLGAWVRLHYVYPYPNVDDVIPLMAAGK---ILPYLDIPFQHASPKVLKSMK 277

Query: 308 RRHTAYEYRQI--IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           R   A+E R +  I + R   P++ I S FIVGFPGET++DF+  +D + +    +   F
Sbjct: 278 R--PAFEDRTLARIKQWREQCPELVIRSTFIVGFPGETEEDFQYLLDWLTEAQLDRVGCF 335

Query: 366 KYSPRLGTPGSNM-LEQVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKH 421
           +YSP  G P +++ L++V +++K    +R +  Q+ +   ++      +G+ IEVLI++ 
Sbjct: 336 QYSPVEGAPANDLGLDEVPDDIKQDRWDRFMAHQQAISAARLQLR---IGKEIEVLIDE- 391

Query: 422 GKEKGKLVGRS----PWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468
             E    VGRS    P +   V    +H    GD ++ R+ D     ++ E V
Sbjct: 392 -VEAQGSVGRSFFDAPEIDGSVFIDGDHGFKPGDKVRCRVVDADEYDMWAEPV 443


>gi|148546471|ref|YP_001266573.1| ribosomal protein S12 methylthiotransferase [Pseudomonas putida F1]
 gi|238066508|sp|A5VZS9|RIMO_PSEP1 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|238066635|sp|Q88NL0|RIMO_PSEPK RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|148510529|gb|ABQ77389.1| MiaB-like tRNA modifying enzyme YliG [Pseudomonas putida F1]
 gi|313497550|gb|ADR58916.1| RimO [Pseudomonas putida BIRD-1]
          Length = 443

 Score =  180 bits (457), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 147/474 (31%), Positives = 235/474 (49%), Gaps = 67/474 (14%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  FV S GC   + DS R+      +GYE V + +DAD++V+NTC   + A  +    
Sbjct: 8   PKVGFV-SLGCPKALVDSERILTQLRMEGYEVVPTYEDADVVVVNTCGFIDSAKAESLEV 66

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G         IKE G   V+V GC+   EG  I    P V  V GPQ Y          
Sbjct: 67  IGEA-------IKENGK--VIVTGCMGVEEGS-IRDVHPSVLSVTGPQQY---------- 106

Query: 144 RFGKRVVDTDYSV----EDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
              ++VV+  + V    +D    + +V   G        A+L I EGC+  C+FC++P  
Sbjct: 107 ---EQVVNAVHEVVPPRQDHNPLIDLVPPQGVKLTPRHYAYLKISEGCNHSCSFCIIPSM 163

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTF 247
           RG  +SR + +V+ EA +L+  GV EI ++ Q+ +A           W G+ +   K   
Sbjct: 164 RGKLVSRPVGEVLSEAERLVKAGVKEILVISQDTSAYGVDVKYKTDFWNGRPV---KTRM 220

Query: 248 SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307
            +L  +LS +   VRL Y   +P       + A G    ++PYL +P Q  S ++LKSM 
Sbjct: 221 LELCEALSSLGAWVRLHYVYPYPNVDDVIPLMAAGK---ILPYLDIPFQHASPKVLKSMK 277

Query: 308 RRHTAYEYRQIIDRIRSVR---PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
           R   A+E R +  RI++ R   P++ I S FIVGFPGET++DF+  +D + +    +   
Sbjct: 278 R--PAFEDRTLA-RIKNWREQCPELVIRSTFIVGFPGETEEDFQYLLDWLTEAQLDRVGC 334

Query: 365 FKYSPRLGTPGSNM-LEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
           F+YSP  G P +++ L +V ++VK E   R +  Q+ +   ++      +G+ I+VLI++
Sbjct: 335 FQYSPVEGAPANDLGLAEVPDDVKQERWDRFMAHQQAISAARLQLR---IGKEIDVLIDE 391

Query: 421 HGKEKGKLVGRS----PWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468
             +E+G  VGRS    P +   V    +H    GD ++ R+ D     ++ E +
Sbjct: 392 V-EEQGS-VGRSFFDAPEIDGSVFIDGDHGFKPGDKVRCRVVDADEYDMWAEPI 443


>gi|163816750|ref|ZP_02208113.1| hypothetical protein COPEUT_02940 [Coprococcus eutactus ATCC 27759]
 gi|158448007|gb|EDP25002.1| hypothetical protein COPEUT_02940 [Coprococcus eutactus ATCC 27759]
          Length = 450

 Score =  180 bits (457), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 112/373 (30%), Positives = 202/373 (54%), Gaps = 27/373 (7%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N  ++  M DM  + G + V+  + AD+ ++NTC +   A +K    L R +  
Sbjct: 11  TLGCKVNQAETDSMLDMLSAAGADIVDFEEKADIYIVNTCSVTNIADKKSRQMLHRAK-- 68

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE-----RARF 145
                K   + +V+ AGC  Q+  +E+L +   V++V+       + +++      R   
Sbjct: 69  -----KRNPESIVIAAGCYVQS-AKELLEQDESVDIVISNNKKKDITDIVNDYINVRKNE 122

Query: 146 G--------KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197
           G        K+    D S E ++E +    GG+       A++ IQ+GC++FC++C++PY
Sbjct: 123 GGDTPAGGEKKEYFIDISKETEYEEM----GGHVPVGHTRAYVKIQDGCNQFCSYCIIPY 178

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257
            RG   SRS   V+ E  +L ++G+ E+ L G +++++ GK  + E     DL+ ++S+I
Sbjct: 179 VRGRIRSRSEEAVIAEVTELAESGIKEVVLTGIHISSY-GKDKNNEGALI-DLIDAISKI 236

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
           KG+ R+R  +  P  +++  ++       + P+ HL +QSG + ILK MNR++T  +Y +
Sbjct: 237 KGIKRIRLGSLEPGIITEDFVRRVSANKKVCPHFHLSLQSGCNTILKRMNRKYTREQYFE 296

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
             + +R      A+++D IVGFPGETD++F  T+  + ++   +   FKYSPR GT  + 
Sbjct: 297 KCEMLREAYDAPALTTDVIVGFPGETDEEFEETVQYLTELNLYEMHIFKYSPRKGTVAAA 356

Query: 378 MLEQVDENVKAER 390
           M +QV   VK +R
Sbjct: 357 MKDQVSPEVKNKR 369


>gi|251780611|ref|ZP_04823531.1| conserved hypothetical protein [Clostridium botulinum E1 str. 'BoNT
           E Beluga']
 gi|243084926|gb|EES50816.1| conserved hypothetical protein [Clostridium botulinum E1 str. 'BoNT
           E Beluga']
          Length = 446

 Score =  180 bits (456), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 131/436 (30%), Positives = 224/436 (51%), Gaps = 28/436 (6%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N  DS  +     S+ YE  N+  +AD+I++NTC   E A ++    +  +   
Sbjct: 10  SLGCDKNRVDSEIILGKMSSE-YEITNNAKEADVIIVNTCGFIESAKQESIDTILEMAEY 68

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL----PELLERARFG 146
           KN+        L++  GC+ Q  G+E+    P +++++G   Y ++     E +E  +  
Sbjct: 69  KNNY----NCKLLIATGCLIQRYGDELKNLIPEIDIMLGVNDYNKIDRVITEFIEGNKEA 124

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
            ++++  YS E+  E   I+       +  +A++ I EGC+ FCT+C++P  RG   SR 
Sbjct: 125 SKLLN--YSDENINEGSRIL-----TTQKESAYIRIAEGCNNFCTYCIIPKIRGKFRSRR 177

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
           +  ++ EA  L   GV E+ L+ Q+   + G  + G+K     LL  LS I+G+  +R  
Sbjct: 178 MENIISEATDLASKGVKELILIAQDTTQY-GSDIYGKK-NLHILLKELSNIEGIKWIRVL 235

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
             +P  + D LI+     D ++ YL +P+Q  SD +LK M R+ +  +    I+++R   
Sbjct: 236 YCYPEAIYDELIEEIAANDKVVKYLDIPIQHISDHVLKLMGRKTSKKDITDKIEKLRKNI 295

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           P+I I + FIVGFP ET +DF   ++ + +    +   FKYS    TP S M  Q+DE++
Sbjct: 296 PNIIIRTTFIVGFPQETQEDFEEILEFLQEYKLDKVGVFKYSREEDTPASKMDGQIDESI 355

Query: 387 KAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE--KGKLVGRSPWLQSVVL- 440
           K ER   L+  Q+K+     + N   V +  ++LIE++  E  KG+    +P +   V  
Sbjct: 356 KEEREEKLMLSQEKISN---NINKLKVDKKYDILIEEYDGEFYKGRNFEMAPDIDGNVFF 412

Query: 441 -NSKNHNIGDIIKVRI 455
            + K   IG+ +KV+I
Sbjct: 413 ESPKKLEIGEFVKVKI 428


>gi|26987932|ref|NP_743357.1| ribosomal protein S12 methylthiotransferase [Pseudomonas putida
           KT2440]
 gi|24982643|gb|AAN66821.1|AE016311_1 conserved hypothetical protein TIGR01125 [Pseudomonas putida
           KT2440]
          Length = 470

 Score =  180 bits (456), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 147/474 (31%), Positives = 235/474 (49%), Gaps = 67/474 (14%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  FV S GC   + DS R+      +GYE V + +DAD++V+NTC   + A  +    
Sbjct: 35  PKVGFV-SLGCPKALVDSERILTQLRMEGYEVVPTYEDADVVVVNTCGFIDSAKAESLEV 93

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G         IKE G   V+V GC+   EG  I    P V  V GPQ Y          
Sbjct: 94  IGEA-------IKENGK--VIVTGCMGVEEGS-IRDVHPSVLSVTGPQQY---------- 133

Query: 144 RFGKRVVDTDYSV----EDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
              ++VV+  + V    +D    + +V   G        A+L I EGC+  C+FC++P  
Sbjct: 134 ---EQVVNAVHEVVPPRQDHNPLIDLVPPQGVKLTPRHYAYLKISEGCNHSCSFCIIPSM 190

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTF 247
           RG  +SR + +V+ EA +L+  GV EI ++ Q+ +A           W G+ +   K   
Sbjct: 191 RGKLVSRPVGEVLSEAERLVKAGVKEILVISQDTSAYGVDVKYKTDFWNGRPV---KTRM 247

Query: 248 SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307
            +L  +LS +   VRL Y   +P       + A G    ++PYL +P Q  S ++LKSM 
Sbjct: 248 LELCEALSSLGAWVRLHYVYPYPNVDDVIPLMAAGK---ILPYLDIPFQHASPKVLKSMK 304

Query: 308 RRHTAYEYRQIIDRIRSVR---PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
           R   A+E R +  RI++ R   P++ I S FIVGFPGET++DF+  +D + +    +   
Sbjct: 305 R--PAFEDRTLA-RIKNWREQCPELVIRSTFIVGFPGETEEDFQYLLDWLTEAQLDRVGC 361

Query: 365 FKYSPRLGTPGSNM-LEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
           F+YSP  G P +++ L +V ++VK E   R +  Q+ +   ++      +G+ I+VLI++
Sbjct: 362 FQYSPVEGAPANDLGLAEVPDDVKQERWDRFMAHQQAISAARLQLR---IGKEIDVLIDE 418

Query: 421 HGKEKGKLVGRS----PWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468
             +E+G  VGRS    P +   V    +H    GD ++ R+ D     ++ E +
Sbjct: 419 V-EEQGS-VGRSFFDAPEIDGSVFIDGDHGFKPGDKVRCRVVDADEYDMWAEPI 470


>gi|298208381|ref|YP_003716560.1| putative Fe-S oxidoreductase [Croceibacter atlanticus HTCC2559]
 gi|83848302|gb|EAP86172.1| putative Fe-S oxidoreductase [Croceibacter atlanticus HTCC2559]
          Length = 458

 Score =  180 bits (456), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 133/457 (29%), Positives = 223/457 (48%), Gaps = 48/457 (10%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N  ++  +   F  +G+ RV   + AD+ V+NTC + E A +       R +++
Sbjct: 15  TLGCKLNFSETSTIARSFEHEGFNRVEFHEHADIYVINTCSVTENADK-------RFKDI 67

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE---RARFGK 147
                K   D  V+  GC AQ + EE L     V++V+G    + +   L    +   G+
Sbjct: 68  VKKAQKINEDAFVIAIGCYAQLKPEE-LADVHGVDLVLGATEKFNITNYLNDLTKNDLGE 126

Query: 148 ----RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
                + D D+ V           G Y+      AFL +Q+GCD  CT+C +P  RGI  
Sbjct: 127 VHSCEIEDADFYV-----------GSYSIGDRTRAFLKVQDGCDYKCTYCTIPLARGISR 175

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK---CTFSDLLYSLSEIKGL 260
           S ++  V+  A+++ +  + EI L G N+  + GKG  G K    TF +L+ +L +++G+
Sbjct: 176 SDTMENVLQNAKEIAEQDIKEIVLTGVNIGDY-GKGEFGNKRHEHTFLELVENLDKVEGI 234

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            RLR ++  P  + +  I    + D  +P+ H+P+QSGS+ +LK M RR+    Y   + 
Sbjct: 235 ERLRISSIEPNLLKNETIDFVSNSDKFVPHFHIPLQSGSNALLKLMRRRYNRELYVDRVA 294

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           RI+SV P+  I  D IVGFPGET++ F  T + ++ +  +    F YS R  T  + M  
Sbjct: 295 RIKSVMPNACIGVDVIVGFPGETEELFLETYNFLNDLDISYLHVFTYSERDNTLAAEMDG 354

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG--------RS 432
            V   V+ +R   L+    +++ +F +  +   + VL E   KE G + G        ++
Sbjct: 355 VVPIKVRKKRSKMLRGLSAKKRRAFYETQINNSLTVLFEGENKE-GYIHGFTENYVKIKA 413

Query: 433 PW-------LQSVVLNSKNHNIGDIIKVRITDVKIST 462
           PW       LQ V L   + +   ++KV I    +ST
Sbjct: 414 PWNPNLVNTLQDVTLTEIDED--GLVKVAIAGEDLST 448


>gi|15642615|ref|NP_232248.1| hypothetical protein VC2620 [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121588096|ref|ZP_01677844.1| conserved hypothetical protein [Vibrio cholerae 2740-80]
 gi|153819032|ref|ZP_01971699.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457]
 gi|153821555|ref|ZP_01974222.1| conserved hypothetical protein [Vibrio cholerae B33]
 gi|229507328|ref|ZP_04396833.1| ribosomal protein S12p Asp88 methylthiotransferase [Vibrio cholerae
           BX 330286]
 gi|229509748|ref|ZP_04399229.1| ribosomal protein S12p Asp88 methylthiotransferase [Vibrio cholerae
           B33]
 gi|229516873|ref|ZP_04406319.1| ribosomal protein S12p Asp88 methylthiotransferase [Vibrio cholerae
           RC9]
 gi|229606834|ref|YP_002877482.1| ribosomal protein S12 methylthiotransferase [Vibrio cholerae
           MJ-1236]
 gi|254851159|ref|ZP_05240509.1| conserved hypothetical protein [Vibrio cholerae MO10]
 gi|255744413|ref|ZP_05418365.1| MiaB-like tRNA modifying enzyme YliG [Vibrio cholera CIRS 101]
 gi|262158474|ref|ZP_06029589.1| MiaB-like tRNA modifying enzyme YliG [Vibrio cholerae INDRE 91/1]
 gi|81544361|sp|Q9KNW0|RIMO_VIBCH RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|9657209|gb|AAF95761.1| conserved hypothetical protein [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121547639|gb|EAX57736.1| conserved hypothetical protein [Vibrio cholerae 2740-80]
 gi|126510413|gb|EAZ73007.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457]
 gi|126520940|gb|EAZ78163.1| conserved hypothetical protein [Vibrio cholerae B33]
 gi|229345936|gb|EEO10908.1| ribosomal protein S12p Asp88 methylthiotransferase [Vibrio cholerae
           RC9]
 gi|229353222|gb|EEO18161.1| ribosomal protein S12p Asp88 methylthiotransferase [Vibrio cholerae
           B33]
 gi|229354833|gb|EEO19754.1| ribosomal protein S12p Asp88 methylthiotransferase [Vibrio cholerae
           BX 330286]
 gi|229369489|gb|ACQ59912.1| ribosomal protein S12p Asp88 methylthiotransferase [Vibrio cholerae
           MJ-1236]
 gi|254846864|gb|EET25278.1| conserved hypothetical protein [Vibrio cholerae MO10]
 gi|255737938|gb|EET93331.1| MiaB-like tRNA modifying enzyme YliG [Vibrio cholera CIRS 101]
 gi|262029635|gb|EEY48284.1| MiaB-like tRNA modifying enzyme YliG [Vibrio cholerae INDRE 91/1]
          Length = 470

 Score =  180 bits (456), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 132/456 (28%), Positives = 225/456 (49%), Gaps = 46/456 (10%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ DS R+     ++GYE VNS  D+D++++NTC   + A ++    +G     
Sbjct: 39  SLGCPKNLVDSERILTQLRTEGYEIVNSYHDSDVVIVNTCGFIDSAVQESLDTIGEA--- 95

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               +KE G   V+V GC+   E +EI +  P V  + GP  Y  + E + +        
Sbjct: 96  ----LKENGK--VIVTGCLGARE-DEIRQVHPNVLGITGPHAYQNVLEHVHQY------- 141

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
                  + F  L + D G        A+L I EGC+  CTFC++P  RG  +SR + ++
Sbjct: 142 -APKPAHNPFTSL-VPDHGVKLTPKHYAYLKISEGCNHRCTFCIIPSMRGDLVSRPVGEI 199

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE-----------KCTFSDLLYSLSEIKG 259
           + EA +L + GV E+ ++ Q+ +A+   G+D +           +     L   L ++  
Sbjct: 200 IGEAERLKNAGVKELLVISQDTSAY---GVDTKHSLGFANGSPVRHNIKALSEELGKMGI 256

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
            VRL Y   +P       + A G +   +PYL +P Q  S R+LK M R   A    + I
Sbjct: 257 WVRLHYVYPYPHVDEIIPLMAEGKV---LPYLDIPFQHASPRVLKMMKRPGQAERTLERI 313

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            + R + P++ I S FIVGFPGET++DF+  +D + +    +   FKYSP  G   + + 
Sbjct: 314 KKWREICPELVIRSTFIVGFPGETEEDFQILLDWLKEAQLDRVGCFKYSPVEGAAANEIE 373

Query: 380 EQVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPW 434
           +Q+ E+VK    ER + +Q+++   ++      +G  ++VLI++  +E   G+    +P 
Sbjct: 374 DQIPEDVKQDRFERFMLVQQEISAAKLQKR---IGSTMQVLIDEVDEEGAIGRTYADAPE 430

Query: 435 LQSVV-LNSK-NHNIGDIIKVRITDVKISTLYGELV 468
           +  +V LN + N   G+++ V I       L+G ++
Sbjct: 431 IDGLVYLNGETNLKPGELVNVVIEHADEYDLWGSIL 466


>gi|326572748|gb|EGE22734.1| MiaB family tRNA modifying enzyme [Moraxella catarrhalis BC7]
          Length = 458

 Score =  180 bits (456), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 132/429 (30%), Positives = 212/429 (49%), Gaps = 43/429 (10%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  FV S GC   + DS R+      +GY+  N  D ADL+V+NTC   E A ++    
Sbjct: 10  PKIGFV-SLGCPKALVDSERIITELTYEGYQVANDYDGADLVVVNTCGFIESAVQESLDA 68

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G   N KN +        V+V GC+ + + E+I    P V  V G   Y  +   +   
Sbjct: 69  IGEAIN-KNGK--------VIVTGCLGK-DAEKIRTMHPAVLAVTGAHAYEEVISAVNH- 117

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
              K +   +Y  + K + ++  D G        A++ I EGC+  CTFC++P  RG  +
Sbjct: 118 HVPKPIKSKEY--DPKIDLIN--DAGIKLTPKHYAYVKISEGCNHRCTFCIIPSLRGDLV 173

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLY 252
           SR +  V+ EA  L  +GV E+ ++ Q+ +A           W G  L   K  F D+  
Sbjct: 174 SRPIDSVMKEAVALKKSGVKELLVISQDTSAYGVDLKYKTVFWEGWPL---KSRFYDMCE 230

Query: 253 SLSEIKGLVRLRYTTSHP------RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306
           ++S++   VRL Y   +P      + M+D +  + G +  L+PYL +P Q  S  +LK+M
Sbjct: 231 AMSKLGIWVRLHYVYPYPHVDAVVQIMADSMTASAG-MGGLLPYLDIPFQHASPNVLKAM 289

Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
            R   +    + I   R++ PDI I S F+VGFPGETD+DF   +D + K    +   F 
Sbjct: 290 KRPAMSENTLERIQAWRAICPDIVIRSTFVVGFPGETDEDFEYLLDWLTKARLDRVGCFT 349

Query: 367 YSPRLGTPGSNMLEQVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK 423
           YS   G   +++   V E+VK    ERL+ LQ+K+  ++++     VG+ + VL+++   
Sbjct: 350 YSEIEGAVANDLPNPVPESVKQSRYERLMALQQKISAEKLAEK---VGKTLVVLVDEIDT 406

Query: 424 EKGKLVGRS 432
           E+   + RS
Sbjct: 407 EENIAICRS 415


>gi|74317782|ref|YP_315522.1| hypothetical protein Tbd_1764 [Thiobacillus denitrificans ATCC
           25259]
 gi|123731779|sp|Q3SI16|RIMO_THIDA RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|74057277|gb|AAZ97717.1| conserved hypothetical protein [Thiobacillus denitrificans ATCC
           25259]
          Length = 443

 Score =  180 bits (456), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 134/408 (32%), Positives = 196/408 (48%), Gaps = 38/408 (9%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P   FV S GC     DS R+     ++GY  V S DDAD++V+NTC   + A ++    
Sbjct: 11  PTVGFV-SLGCPKATVDSERILTQLRAEGYGIVGSYDDADVVVVNTCGFIDAAVQESLEA 69

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G         I E G   V+V GC+  A+GE I    P V  V GP   + L E++E  
Sbjct: 70  IGEA-------IAENGK--VIVTGCLG-AKGELIREVHPKVLAVSGP---HALDEVMEA- 115

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
                V        D F  L I  GG        A+L I EGC+  C+FC++P  RG  +
Sbjct: 116 -----VHGALPKPHDPFADL-IPPGGIKLTPRHYAYLKISEGCNHRCSFCIIPSMRGDLV 169

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLY 252
           SR + +V+ EA  L+  GV E+ ++ Q+ +A           W G+ +   K   ++L  
Sbjct: 170 SRPIGEVMHEAEALVSAGVQELLVVSQDTSAYGVDVKYRPGFWGGRPV---KTRMTELAR 226

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
           +L  +   VRL Y   +P    D +I    D  V++PYL +P Q  S RILK M R    
Sbjct: 227 ALGSLGAWVRLHYVYPYPS--VDDVIPLMAD-GVILPYLDIPFQHASPRILKLMKRPGAV 283

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
            +    I   R+  P++ + S FIVGFPGETD +F   +D +      +   FKYSP  G
Sbjct: 284 EKTLDRIHAWRAAVPELTLRSTFIVGFPGETDPEFEELLDFLKHAQLDRVGCFKYSPIEG 343

Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
              + + + V E +K ERL    +   E   +  DA +G+ IEVL+++
Sbjct: 344 AVANELPDPVPEELKDERLERFMETQAEISAARLDAKIGRTIEVLVDE 391


>gi|262166639|ref|ZP_06034376.1| ribosomal protein S12p Asp88 methylthiotransferase [Vibrio mimicus
           VM223]
 gi|262026355|gb|EEY45023.1| ribosomal protein S12p Asp88 methylthiotransferase [Vibrio mimicus
           VM223]
          Length = 470

 Score =  180 bits (456), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 135/456 (29%), Positives = 225/456 (49%), Gaps = 46/456 (10%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ DS R+     ++GYE VNS  D+D++++NTC   + A ++    +G     
Sbjct: 39  SLGCPKNLVDSERILTQLRTEGYEIVNSYHDSDVVIVNTCGFIDSAVQESLDTIGEA--- 95

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               +KE G   V+V GC+   E +EI +  P V  + GP  Y  + E + +        
Sbjct: 96  ----LKENGK--VIVTGCLGARE-DEIRQVHPNVLGITGPHAYQNVLEHVHQY------- 141

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
                  + F  L + D G        A+L I EGC+  CTFC++P  RG  +SR + ++
Sbjct: 142 -APKPAHNPFTSL-VPDHGVKLTPKHYAYLKISEGCNHRCTFCIIPSMRGDLVSRPVGEI 199

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT-FSDLLYSLSEIKGL--------- 260
           + EA +L + GV E+ ++ Q+ +A+   G+D +    FS+       IK L         
Sbjct: 200 IGEAERLKNAGVKELLVISQDTSAY---GVDTKHSLGFSNGSPVRHNIKALSEELGKMGI 256

Query: 261 -VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
            VRL Y   +P       + A G +   +PYL +P Q  S R+LK M R   A    + I
Sbjct: 257 WVRLHYVYPYPHVDEIIPLMAEGKV---LPYLDIPFQHASPRVLKMMKRPGQAERTLERI 313

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            + R + P++ I S FIVGFPGET++DF+  +D + +    +   FKYSP  G   + + 
Sbjct: 314 KKWREICPELVIRSTFIVGFPGETEEDFQILLDWLKEAQLDRVGCFKYSPVEGAAANEIE 373

Query: 380 EQVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPW 434
           +Q+ E VK    ER + +Q+++   ++      +G  ++VLI++  +E   G+    +P 
Sbjct: 374 DQIPEEVKQDRFERFMLVQQEISAAKLQKR---IGSTMQVLIDEVDEEGAIGRTYADAPE 430

Query: 435 LQSVV-LNSK-NHNIGDIIKVRITDVKISTLYGELV 468
           +  +V LN + N   G+++ V I       L+G ++
Sbjct: 431 IDGLVYLNGETNLKPGELVNVVIEHADEYDLWGSVL 466


>gi|268317548|ref|YP_003291267.1| MiaB-like tRNA modifying enzyme [Rhodothermus marinus DSM 4252]
 gi|262335082|gb|ACY48879.1| MiaB-like tRNA modifying enzyme [Rhodothermus marinus DSM 4252]
          Length = 441

 Score =  180 bits (456), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 135/434 (31%), Positives = 211/434 (48%), Gaps = 26/434 (5%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N  ++  +E  F ++ YE V   + AD+ V+NTC +  +A  +        R +
Sbjct: 8   TLGCKLNFAETSTLERDFLARHYEVVPFGEPADVTVINTCTVTAEAERQC-------RQI 60

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               I++  +  ++V GC AQ   EEI R    V+VV+G +  + L EL+E  +  K   
Sbjct: 61  IRRAIRQNPNAFIIVTGCYAQLRPEEIARIEG-VDVVLGAREKFHLFELIESFQ-KKEQT 118

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
               S  D+ +          R R   AFL IQ+GCD  C+FC +P  RG   S+ +   
Sbjct: 119 QVAVSCIDELQEFGPAFSSTERTR---AFLKIQDGCDYVCSFCTIPKARGRSRSQPIEAT 175

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK--CTFSDLLYSLSEIKGLVRLRYTTS 268
           V +AR+L + G  EI L G N+      GL G++   T  DLL  L  ++G+ R R ++ 
Sbjct: 176 VAQARQLAEMGFKEIVLTGVNI------GLYGQEFGATLLDLLRELDRVEGIERYRISSI 229

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
            P  ++D +I    +    MP+ H+P+QSG + +L  M RR+    Y + + RIR + PD
Sbjct: 230 EPNLLTDEIIAFVAESRAFMPHFHMPLQSGDNFVLGKMRRRYRRELYAERVARIRELLPD 289

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ-----VD 383
            AI  D IVGFP ET + F  T   ++++  +    F YS R GT     LE+     V 
Sbjct: 290 AAIGVDVIVGFPTETPERFENTYRFLNELPISYLHVFTYSERPGTAAVEQLERMGGQPVP 349

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
           +  ++ R   LQ    +++ +F  A  GQ+  VL E   K  G + G +     V     
Sbjct: 350 KPERSRRNRMLQVLSHKKRHAFYRAHQGQVRPVLWESTEKH-GLMYGYTDNYIRVQRPFD 408

Query: 444 NHNIGDIIKVRITD 457
              +G I  VR+ D
Sbjct: 409 PERVGQIEPVRLGD 422


>gi|332799240|ref|YP_004460739.1| 30S ribosomal protein S12 methylthiotransferase rimO
           [Tepidanaerobacter sp. Re1]
 gi|332696975|gb|AEE91432.1| Ribosomal protein S12 methylthiotransferase rimO [Tepidanaerobacter
           sp. Re1]
          Length = 441

 Score =  180 bits (456), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 126/444 (28%), Positives = 222/444 (50%), Gaps = 19/444 (4%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ DS  M  +     Y   N+ ++A +I++NTC   ++A ++    +  +  L
Sbjct: 9   SLGCDKNLVDSEYMLGILKKHNYTITNNENEAQIIIINTCGFIKEAKQESIDTILEMAQL 68

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
           K    K G   L++  GC+AQ    E+L   P ++ V+G   + ++ E++++    K  +
Sbjct: 69  K----KLGKCRLLIATGCLAQRYKSELLTEIPELDAVIGTGDFDKICEVIQQLDSNKINL 124

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
             +YS  D ++  S V     R    T+F+ I EGCD +C++C +P+ RG   SR +  +
Sbjct: 125 TNNYSFID-YDVHSRV-----RIYPYTSFVKIAEGCDNYCSYCAIPFIRGSYRSRKIEAI 178

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270
            +E + L+  GV EI L+ Q+   + G  + G + +  +LL  L +I G   +R   ++P
Sbjct: 179 KEEVKILVAQGVKEINLVAQDTTNY-GVDIYG-RPSLPELLQELIKIDGEYLIRILYAYP 236

Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330
            +++  L+        +  YL +P+Q  +DRIL+ M R   +     +ID IRS  P+I 
Sbjct: 237 TNINKELLDVMLSSKKIANYLDIPLQHFNDRILRLMGRPTNSQSIITLIDNIRSRLPEIT 296

Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER 390
           + + FIVGFP ET+ ++   +D + +  + +   FKYS    T  + ++ Q+ E +K +R
Sbjct: 297 LRTTFIVGFPTETEAEYEQLLDFIREYKFDKVGVFKYSQEEDTVAAALMPQISEKIKQKR 356

Query: 391 LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVV---LNSK 443
              L K         N    G+I+ VLIE + +     +GRS    P++  +V     + 
Sbjct: 357 YNKLMKVQNSISKIKNQRFKGKILNVLIEGYDQANQIFIGRSENDAPFVDGIVKVLCGNG 416

Query: 444 NHNIGDIIKVRITDVKISTLYGEL 467
           N  +G I  V+I +     L G+L
Sbjct: 417 NCELGQIYPVKILETYEYDLLGKL 440


>gi|126730999|ref|ZP_01746808.1| MiaB-like tRNA modifying enzyme [Sagittula stellata E-37]
 gi|126708715|gb|EBA07772.1| MiaB-like tRNA modifying enzyme [Sagittula stellata E-37]
          Length = 421

 Score =  180 bits (456), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 112/359 (31%), Positives = 183/359 (50%), Gaps = 30/359 (8%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  M+ +    G          D +++NTC +  +A  K    + R+R  
Sbjct: 9   TLGCRLNAYETEAMKRLAADAGL--------TDAMIVNTCAVTSEAVAKARKEIRRLR-- 58

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVV-----VGPQTYYRL-PELLERAR 144
                ++  D  ++V GC AQ + +       + +V+     + P+T+ RL P+ +    
Sbjct: 59  -----RDNPDAPLIVTGCAAQIDPDSFAAMDEVTHVIGNTEKMAPETWQRLTPDFI--GD 111

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
             + +V+   SVE+    L  +DG   R R   A++ +Q GCD  CTFC++PY RG   S
Sbjct: 112 TPRVLVNDIMSVEETAGHL--IDGFGTRSR---AYVQVQNGCDHRCTFCIIPYGRGNSRS 166

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
                VVD+ ++L+  G  E+ L G ++ +W G  L GE     DL+  +  +  + RLR
Sbjct: 167 VPAGVVVDQIKRLVQEGYNEVVLTGVDLTSW-GADLPGEP-RLGDLVLRILRLTDVPRLR 224

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
            ++    +  D L++A      LMP+LHL +Q G D ILK M RRH   +  +  +  R+
Sbjct: 225 ISSIDSIEADDALMQAIATEPRLMPHLHLSLQHGHDLILKRMKRRHLRDDAIRFCEEARA 284

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           +RPD+   +D I GFP ETD+ F A++ LV+  G      F YS R GTP + +  +VD
Sbjct: 285 LRPDMTFGADIIAGFPTETDEHFDASLRLVEDCGLTWLHVFPYSARPGTPAAKIPNRVD 343


>gi|289751387|ref|ZP_06510765.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
 gi|289691974|gb|EFD59403.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
          Length = 319

 Score =  180 bits (456), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 96/254 (37%), Positives = 147/254 (57%), Gaps = 15/254 (5%)

Query: 23  VPQRFF-VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
            P R + V++YGCQMNV+DS R+  +  + GY R     +AD++V NTC +RE A  ++Y
Sbjct: 22  APARTYQVRTYGCQMNVHDSERLAGLLEAAGYRRATDGSEADVVVFNTCAVRENADNRLY 81

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             L  +      R +   D+ + V GC+AQ + + +LRR+P V+VV G      LP LLE
Sbjct: 82  GNLSHL----APRKRANPDMQIAVGGCLAQKDRDAVLRRAPWVDVVFGTHNIGSLPTLLE 137

Query: 142 RARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           RAR  K   V+   +++     L       +R+    A+++I  GC+  CTFC+VP  RG
Sbjct: 138 RARHNKVAQVEIAEALQQFPSSLP-----SSRESAYAAWVSISVGCNNSCTFCIVPSLRG 192

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW----RGKGLDGEKCTFSDLLYSLSE 256
            E+ RS + ++ E R L+++GV E+TLLGQNVNA+        L   +  F++LL +  +
Sbjct: 193 REVDRSPADILAEVRSLVNDGVLEVTLLGQNVNAYGVSFADPALPRNRGAFAELLRACGD 252

Query: 257 IKGLVRLRYTTSHP 270
           I GL R+R+T+ HP
Sbjct: 253 IDGLERVRFTSPHP 266


>gi|256811070|ref|YP_003128439.1| MiaB-like tRNA modifying enzyme [Methanocaldococcus fervens AG86]
 gi|256794270|gb|ACV24939.1| MiaB-like tRNA modifying enzyme [Methanocaldococcus fervens AG86]
          Length = 418

 Score =  180 bits (456), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 134/455 (29%), Positives = 234/455 (51%), Gaps = 55/455 (12%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R +V+ YGC +N  D+  +++     G++ V+++++AD++V+NTC +R +   ++   + 
Sbjct: 4   RVYVEGYGCVLNTADTEIIKNSLKEAGFKLVDNLEEADIVVINTCVVRLETENRMIYRIN 63

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            ++NL            VVVAGC+ +A     L+      + + P+  Y+  E+L     
Sbjct: 64  ELKNLGKE---------VVVAGCLPKA-----LKNKVKDFLHIYPRESYKAGEILR---- 105

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNR---------KRGVTAFLTIQEGCDKFCTFCVVP 196
                   Y +E  + R+  ++   N+         K  +   L I EGC   C++C+V 
Sbjct: 106 --------YYIEKHY-RMPYIEEEINKTLYKKLDYLKPSLITPLPICEGCLGNCSYCIVK 156

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLS 255
             RG  IS    ++V++A++LI+ GV  + +  Q+   +   G D G+    ++LL  L+
Sbjct: 157 IARGKLISYPREKIVNKAKELINKGVKCLFITAQDTACY---GFDIGD--NLANLLNDLT 211

Query: 256 EIKGLVRLRYTTSHPRDMS---DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
           +I+G   +R    H +++    D LI+A+ +  V   +LHLP+QSG D ILK MNR +T 
Sbjct: 212 QIEGEFIMRVGMMHAKNVEPILDELIEAYQNEKV-GKFLHLPLQSGDDEILKKMNRGYTV 270

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
            E+++I+D  R    ++  ++D IVGFPGET++ F+ T++++ ++        KYS R G
Sbjct: 271 DEFKEIVDEFRRKVRNLCFTTDIIVGFPGETEEQFQNTLEVLKELKPDYIHGAKYSQRKG 330

Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS 432
           T  + M +QVD  ++  R   L K  RE     N   VG+ + VL+   GK      G +
Sbjct: 331 TEAAKM-KQVDTKIRKRRSEILDKLRRELSYLNNKKYVGKTMRVLVLDEGK------GYT 383

Query: 433 PWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
              +  V+  +   IG+  KV+ITD K   L GE+
Sbjct: 384 DNFK--VVKFEGGEIGEFRKVKITDAKTFGLRGEI 416


>gi|256827179|ref|YP_003151138.1| MiaB-like tRNA modifying enzyme YliG [Cryptobacterium curtum DSM
           15641]
 gi|256583322|gb|ACU94456.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Cryptobacterium
           curtum DSM 15641]
          Length = 477

 Score =  180 bits (456), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 134/478 (28%), Positives = 219/478 (45%), Gaps = 62/478 (12%)

Query: 14  VSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIR 73
            S+I + CI+       + GC  N  DS +M       G+  +N    AD+I++NTC   
Sbjct: 40  TSRIPNACII-------TMGCAKNEVDSAKMRGQLQEGGWSVINDPTAADVIIVNTCSFI 92

Query: 74  EKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTY 133
           + A E+    +  + +LK  R    G   +VVAGC+    G+++                
Sbjct: 93  QAATEESLETIFEVADLKRVR---SGQAKIVVAGCMPARYGDDLSD-------------- 135

Query: 134 YRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRG------------------ 175
                L E +RF         S ED    LS+VD   +R +                   
Sbjct: 136 ----SLTEASRF------VPCSKEDDI--LSVVDELIDRPKSSYAPGASSIPVVASSDPL 183

Query: 176 VTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW 235
            +A++ I +GCD+FC++C +P+ RG   S +   +  E  + ID+G  EI L+ Q+   W
Sbjct: 184 YSAYVKISDGCDRFCSYCTIPFIRGRYHSFTFEVIEAEVTRCIDSGAREIVLIAQDTGRW 243

Query: 236 RGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPV 295
            G+  D +  T + L+  L+E+      R     P  ++D L+ A    D +  YL +P 
Sbjct: 244 -GQDFD-QPSTLACLMARLAELHPDTWFRVMYLQPEGVTDELLAAMASHDNICSYLDIPF 301

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
           Q   +R+L SMNRR +   Y+ +I+ +RS  P I + +  I G+PGE D+DF   ++ +D
Sbjct: 302 QHADERLLTSMNRRGSRAGYQTLIEHVRSCVPGITLRTTMIAGYPGERDEDFEEMLEFID 361

Query: 356 KIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIE 415
           +        F YS   GT  + + +QVDE +K ER   L+              +G  ++
Sbjct: 362 EADLDYVGVFAYSQEEGTRAARLSDQVDEAIKQERAQRLRDVADAHSQMRVAKRIGSTMD 421

Query: 416 VLIEKHGKEKGKLVGR----SPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
           VL+    +E G+L+GR    +P +  VV       +G+I++V ITD  +  + GE  V
Sbjct: 422 VLV-LGCEEDGRLIGRAQCQAPDVDGVVYLDHGQ-VGEIVQVDITDTFLYEMEGECHV 477


>gi|237653780|ref|YP_002890094.1| ribosomal protein S12 methylthiotransferase [Thauera sp. MZ1T]
 gi|237625027|gb|ACR01717.1| MiaB-like tRNA modifying enzyme YliG [Thauera sp. MZ1T]
          Length = 443

 Score =  179 bits (455), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 138/463 (29%), Positives = 222/463 (47%), Gaps = 50/463 (10%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           +P+  FV S GC     DS  +     ++GY    S DDADL+V+NTC   + A E+   
Sbjct: 9   LPRVGFV-SLGCPKATVDSEHILTRLRAEGYAISGSYDDADLVVVNTCGFIDAAVEESLD 67

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +G         + E G   V+V GC+  A+ + IL   P V  V GP     +   + R
Sbjct: 68  AIGEA-------LAENGK--VIVTGCLG-AKDDVILAAHPQVLAVTGPHATEEVMHAVHR 117

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
                          D F  L +   G        A+L I EGC+  C+FC++P  RG  
Sbjct: 118 HL---------PKPHDPFTDL-VPPQGIRLTPQHYAYLKISEGCNHRCSFCIIPSMRGDL 167

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLL 251
           +SR + +V+ EA  L D GV E+ ++ Q+ +A           W G+ +   K    DL 
Sbjct: 168 VSRPIHEVMREAEALADAGVKELLVISQDTSAYGVDVKYRTGFWGGRPV---KTRLLDLA 224

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
            +L E+   +RL Y   +P       + A G +   +PYL +P Q  S RILK+M R   
Sbjct: 225 KALGELGIWIRLHYVYPYPSVDDLIPLMAEGKI---LPYLDVPFQHASPRILKAMKRPAN 281

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
           A    + + + RS+ P++ I S FI GFPGET++DF   ++ +++    +  +F YSP  
Sbjct: 282 AENVLERVRKWRSICPELTIRSTFITGFPGETEEDFEMLLNFLEEAQLDRVGAFAYSPVE 341

Query: 372 GTPGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL 428
           G   + +   V + V+ E   RL+  Q+ +  Q++   +A + + + VL+++   E+G L
Sbjct: 342 GATANELPGAVPDEVREERRARLMDFQEDISTQRL---EAKIDREMTVLVDE-VDEEGAL 397

Query: 429 V---GRSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGE 466
               G +P +  +V+  +   +  GD ++VRITD  +  LY E
Sbjct: 398 ARSPGDAPEIDGLVVIPEGDGLAPGDFVRVRITDCDVHDLYAE 440


>gi|218779734|ref|YP_002431052.1| RNA modification enzyme, MiaB family [Desulfatibacillum
           alkenivorans AK-01]
 gi|218761118|gb|ACL03584.1| RNA modification enzyme, MiaB family [Desulfatibacillum
           alkenivorans AK-01]
          Length = 437

 Score =  179 bits (455), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 123/408 (30%), Positives = 207/408 (50%), Gaps = 34/408 (8%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           +P+ F++ + GC++N Y+S  +  +    G  RV     AD++V+NTC +  KA+ +   
Sbjct: 1   MPKTFYINTLGCKVNQYESDNLACILEKAGMTRVGEKQKADVVVVNTCTVTHKASTQS-- 58

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
                R      IK     LV+  GC AQ+E  E L     V+ VV     + +P+++E+
Sbjct: 59  -----RQALRQAIKAHKGALVLATGCYAQSE-PEALESIKGVSFVVDNTQRHLIPQIIEK 112

Query: 143 ARFGKRV--------VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCV 194
               K             D+ V D       V G  +R      FL IQ+GC+ FCT+C+
Sbjct: 113 ESPRKSAEKLCGEIRFHHDFPVPD-----IPVPGTRSR-----PFLKIQDGCNAFCTYCI 162

Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL 254
           VPYTRG   S     V+     L   G  EI   G ++  + G+ LD      +DL+  L
Sbjct: 163 VPYTRGPSRSMPWDAVLRHVAHLTGQGFGEIVFTGIHL-GYYGQDLDPP----TDLVSLL 217

Query: 255 SEIKGLV---RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
            E++G +   RLR ++  P+++S  L+        + P+LHLP+QSG   IL+ MNR ++
Sbjct: 218 KELEGRMESGRLRLSSIEPKEVSQDLLDLMAGSKRICPHLHLPLQSGDSEILERMNRPYS 277

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
           A  + +++  +R   P+  I  D +VGFPGET++ F+  + L++++  +    F YS R 
Sbjct: 278 AEFFEELVHNVRKALPEAGIGVDVLVGFPGETEEHFKTALSLLERLPASYFHVFPYSQRQ 337

Query: 372 GTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419
           GTP +   +QV  +V A+R   ++     ++++F+   +G+ +EV +E
Sbjct: 338 GTPAAKFPDQVPPDVLAKRTKIIRGLGGLKRLAFHAGIIGKTVEVCVE 385


>gi|149280491|ref|ZP_01886609.1| possible 2-methylthioadenine synthetase [Pedobacter sp. BAL39]
 gi|149228735|gb|EDM34136.1| possible 2-methylthioadenine synthetase [Pedobacter sp. BAL39]
          Length = 439

 Score =  179 bits (455), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 116/394 (29%), Positives = 199/394 (50%), Gaps = 12/394 (3%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N  ++  +  +F   GY  V+  D AD+ V+NTC + E A +K        R +
Sbjct: 8   TLGCKLNFSETSTIGRLFTDAGYAVVDFTDAADVYVINTCSVTEHADKKC-------RKV 60

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               +K   +  V + GC AQ +  EI      V++V+G    +R+ E +       + V
Sbjct: 61  VKEALKYSPNAYVTIVGCYAQLKPAEIAEIEG-VDMVLGAAEKFRIVEYISDLTKAPKAV 119

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
               ++E             +R R    FL +Q+GCD  CT+C +P  RG   S ++  V
Sbjct: 120 IHQQNIEKVNHNFIAAYSIGDRTR---TFLKVQDGCDYPCTYCTIPLARGGSRSDTIENV 176

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270
           ++ AR++  +GV EI L G N+  +  +  + E   F DL+ +L E++G+ R+R ++  P
Sbjct: 177 INRARQIAGSGVKEIVLTGVNLGDFGIRNGERED-KFFDLVKALDEVEGIERIRISSIEP 235

Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330
             +S+ +I         +P+ H+P+QSGS++IL  M RR+    Y + ++ I+++ P+  
Sbjct: 236 NLLSNEIINFVASSKRFVPHFHIPLQSGSNKILGLMRRRYQRELYTERVETIKALIPNCC 295

Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER 390
           I  D IVGFPGET +DF  T   ++ +  +    F YS R  TP + M   V  + +AER
Sbjct: 296 IGVDVIVGFPGETQEDFLDTYQFLNGLDISYLHVFTYSEREQTPAAEMKGSVPGSSRAER 355

Query: 391 LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE 424
              L     +++ +F  + +  + EVL E   K+
Sbjct: 356 SKMLHILSDKKRRAFYQSQIDTVGEVLFEDDQKD 389


>gi|261749373|ref|YP_003257058.1| putative 2-methylthioadenine synthetase [Blattabacterium sp.
           (Periplaneta americana) str. BPLAN]
 gi|261497465|gb|ACX83915.1| putative 2-methylthioadenine synthetase [Blattabacterium sp.
           (Periplaneta americana) str. BPLAN]
          Length = 444

 Score =  179 bits (455), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 125/406 (30%), Positives = 207/406 (50%), Gaps = 24/406 (5%)

Query: 33  GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92
           GC++N  ++  +     +  YE V+    AD+ V+NTC + EKA EK + ++ R    KN
Sbjct: 12  GCKLNYAETSTIARKLSNSNYELVSFKSVADIYVINTCSVTEKA-EKDFKYVVRFFMKKN 70

Query: 93  SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDT 152
           ++        ++  GC AQ   +EI    P V++V+G +  +++ + L++A   K+    
Sbjct: 71  AK------AFIIAIGCYAQIHPKEI-SSFPGVDLVLGMKEKFQIIDYLDQANLFKKNPAK 123

Query: 153 DYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
             S E    F   SI D    R R   +F  IQ+GCD  C++C++P +RG   S S+  +
Sbjct: 124 IISKETNSYFPSYSIGD----RTR---SFFKIQDGCDYKCSYCIIPISRGFSRSESIENI 176

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGL----DGEKCTFSDLLYSLSEIK--GLVRLR 264
           +   R L   G+ EI L G N+  + GK +     G   TF DL+ ++ +IK  G  R+R
Sbjct: 177 LKNIRFLFKKGIKEIVLTGINIGDY-GKKIYGNHPGRSYTFFDLIQAIDQIKEEGRGRIR 235

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
            ++  P  + +  I+      + MP+ H+P+QSGS+ IL  M RR+    Y++ +  IR+
Sbjct: 236 LSSIEPNLLKEKCIEFLSKSRLFMPHFHIPLQSGSNYILGKMQRRYRRELYQEKVQYIRN 295

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           + PD  I SD IVGFPGET + F  T   + K+  +    F YS R  T   ++ ++V  
Sbjct: 296 LIPDAYIGSDIIVGFPGETHEHFLETYHFLKKLEISFLHIFPYSQRPNTKSLSIQKKVSP 355

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG 430
            V+ +R + L+   +++  SF +  +     VL E +    G L G
Sbjct: 356 EVQRKRKIILRVLSKQKYRSFCEKQIHTKKTVLFENNSVNHGYLYG 401


>gi|291280234|ref|YP_003497069.1| hypothetical protein DEFDS_1859 [Deferribacter desulfuricans SSM1]
 gi|290754936|dbj|BAI81313.1| conserved hypothetical protein [Deferribacter desulfuricans SSM1]
          Length = 411

 Score =  179 bits (455), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 119/403 (29%), Positives = 213/403 (52%), Gaps = 41/403 (10%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + ++ ++GC++N+ +S  ++     +G+  V+++++AD++V+N+C + E A +K   F+ 
Sbjct: 3   KIYIHTFGCKVNLSESENIKLEGSQKGFLFVDNIEEADVVVINSCAVTELAEKKCNDFIK 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           +I+   N +        V+V GC A    +EI      ++ V+  +    L E L     
Sbjct: 63  KIKKRYNIK--------VLVTGCYALILSKEI---KSYIDFVLDNEKKESLVEFLSNT-- 109

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                  DY    K             K    AFL IQ+GCD FCT+C++P+ RG   S+
Sbjct: 110 ---FQLNDYKQTSK------------PKLKTRAFLKIQDGCDAFCTYCIIPFLRGKPKSK 154

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL----V 261
            + +V+ E   L++    EI L+G ++  +   G+D    T  +LL  +  IK      +
Sbjct: 155 PIEKVIKEIDDLVNLNYKEIVLVGIHIGKY---GID-HNTTLKNLLKEI--IKQYQNKNI 208

Query: 262 RLRYTTSHPRDMSDCLIK--AHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           R R ++    ++ D LI    H +  ++  + H+ +Q+GS++IL+ M RRHTA ++  I 
Sbjct: 209 RFRLSSLDVDEIDDELIDIVEHSN-GLICNHFHIALQNGSNKILQLMKRRHTAEDFIDIC 267

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
           ++I+S   D  I +D IVGFP ETD+DF +T+++++K        F YS R GT  S M 
Sbjct: 268 NKIKSKIADCTIGTDVIVGFPEETDEDFESTINVLNKANVDYLHVFSYSKREGTLASKMK 327

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422
            Q+ EN+K ER   L+K  ++ +++     +G+  ++L+EK+G
Sbjct: 328 NQIPENIKKERAKMLRKIGKKLKLNSELKMIGKTAKILLEKNG 370


>gi|190575308|ref|YP_001973153.1| ribosomal protein S12 methylthiotransferase [Stenotrophomonas
           maltophilia K279a]
 gi|238066609|sp|B2FP10|RIMO_STRMK RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|190013230|emb|CAQ46864.1| conserved hypothetical protein [Stenotrophomonas maltophilia K279a]
          Length = 453

 Score =  179 bits (455), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 138/463 (29%), Positives = 221/463 (47%), Gaps = 50/463 (10%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  FV S GC   + DS R+     S+GY+ V S D AD++V+NTC   + A  +    
Sbjct: 6   PKVGFV-SLGCPKALVDSERILTQLRSEGYDIVPSYDSADVVVVNTCGFIDSAVTESLDA 64

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G   N +N +        V+V GC+ +   E+I    P V  V GPQ Y  + E +  A
Sbjct: 65  IGEAMN-QNGK--------VIVTGCLGK-RPEQIREAYPNVLAVSGPQDYQSVMEAVHEA 114

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
              K          D F  L + D G        A+L I EGC+  C+FC++P  RG  +
Sbjct: 115 LPPKH---------DPFVDL-VPDYGIKLTPRHYAYLKISEGCNHKCSFCIIPSMRGKLV 164

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLY 252
           SR + +V+ EA +L+  GV E+ ++ Q+ +A           WR K     +     L  
Sbjct: 165 SRPVDEVLREAERLVRGGVRELLVVSQDTSAYGVDVKYAEKMWRNKAY---QTRLKALCE 221

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
            LSE+   VR+ Y   +P    D ++    + + ++PYL +P Q  S RIL+ M R    
Sbjct: 222 GLSELDAWVRMHYVYPYPH--VDEVVPLMAE-NRILPYLDIPFQHASPRILRLMKRPGAV 278

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
            +  + +   R + PDI + S FIVGFPGET+ +F   +  +D+    +  +F YSP  G
Sbjct: 279 EKTLERVQNWRRIAPDITVRSTFIVGFPGETEAEFEELLSFLDEAQLDRVGAFAYSPVEG 338

Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS 432
              +++ + V E VK ERL    +K  +   +  +A +G + + L++    E    V RS
Sbjct: 339 ATANDLPDAVPEEVKQERLARFMEKQAQISAARLEAKIGTVQQCLVD--AIEGDIAVARS 396

Query: 433 ----PWLQSVVLNSKNHN-----IGDIIKVRITDVKISTLYGE 466
               P +  +V + +N +     +G+ + V IT+     LYG+
Sbjct: 397 KADAPEIDGLV-HIQNADQVPLRVGEFVDVEITESDEHDLYGD 438


>gi|148557855|ref|YP_001257555.1| ribosomal protein S12 methylthiotransferase [Brucella ovis ATCC
           25840]
 gi|238065299|sp|A5VUQ0|RIMO_BRUO2 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|148369140|gb|ABQ62012.1| conserved hypothetical protein TIGR01125 [Brucella ovis ATCC 25840]
          Length = 438

 Score =  179 bits (455), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 148/468 (31%), Positives = 224/468 (47%), Gaps = 54/468 (11%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
            P+  FV S GC   + DS R+     S+GYE     D ADL+++NTC   + A ++   
Sbjct: 3   APRVSFV-SLGCPKALVDSERIITGLRSEGYEISRKHDGADLVIVNTCGFLDSARDESLE 61

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +G   N       E G   V+V GC+  AE + I  R P V  + GPQ Y         
Sbjct: 62  AIGLALN-------ENGK--VIVTGCLG-AEPDVIRERHPNVLAITGPQAY--------- 102

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVD----GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
               + V++  + V         VD     G        A+L I EGC   C+FC++P  
Sbjct: 103 ----ESVMNAVHEVAPPPPHDPFVDLVPPQGVKLTPRHYAYLKISEGCSNRCSFCIIPAL 158

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE-----------KCTF 247
           RG  +SR +++V+ EA KL+  GV EI ++ Q+ +A+   GLD +           +  F
Sbjct: 159 RGDLVSRPINEVLREAEKLVQAGVKEILVISQDTSAY---GLDIKYQEAMWQDRTVRTKF 215

Query: 248 SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307
            DL   L E+   VR+ Y   +P       + A G +   +PYL +P Q  S  +LK+M 
Sbjct: 216 LDLSRELGEMGVWVRMHYVYPYPHVDEVIPLMAEGKI---LPYLDIPFQHASPAVLKNMR 272

Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           R     +  + I   R   PD+A+ S FIVG+PGET++DF+  +D +D+    +A  FKY
Sbjct: 273 RPAHQEKTSRRIQAWRETCPDLAVRSTFIVGYPGETEEDFQMLLDWLDEAKIERAGCFKY 332

Query: 368 SPRLGTPGSNM-LEQVDENVKAERLLCLQKKLREQQVSFN--DACVGQIIEVLIEKHGKE 424
               G   +++ LEQV E VK  R      K  +QQ+S N     VG+ + V+I++    
Sbjct: 333 EAVKGAKANDLGLEQVPEEVKEARWHRFMAK--QQQISTNLLKKKVGKRLPVIIDEANGT 390

Query: 425 KGKLVGR--SPWLQ-SVVLNSKNH-NIGDIIKVRITDVKISTLYGELV 468
            GK   R  +P +  SV ++S+    +GDI+ V+I       L+G  V
Sbjct: 391 IGKGRTRYDAPEIDGSVHISSRRPLRVGDIVTVKIEASDAYDLHGTAV 438


>gi|320450578|ref|YP_004202674.1| hypothetical protein TSC_c15080 [Thermus scotoductus SA-01]
 gi|320150747|gb|ADW22125.1| conserved hypothetical protein [Thermus scotoductus SA-01]
          Length = 434

 Score =  179 bits (455), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 138/452 (30%), Positives = 214/452 (47%), Gaps = 45/452 (9%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC   + DS ++     + GYE   + ++A+L+V+NTC     A E+    +G     
Sbjct: 8   SLGCPKALVDSEQILSRLKALGYETSATYEEAELVVVNTCGFITPAIEESLEAIGEA--- 64

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               ++E G   VVV GC+  A  E I  R P V  V GP    R+ + ++      R  
Sbjct: 65  ----LRENGK--VVVTGCLG-ARPEVIRERYPNVLEVTGPGEVERVLQAVQEVLPAPR-- 115

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
                       L ++           A+L + EGCD  C+FC++P  RG   SR   +V
Sbjct: 116 ---------NPLLDLIPPQVKLTPRHYAYLKLSEGCDHRCSFCIIPKLRGGLRSRDAGEV 166

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLD--------GE---KCTFSDLLYSLSEIKG 259
           + EA +L+  G  E+ L+ Q+++A+   G+D        G+   K    DLL  ++E+  
Sbjct: 167 LAEAARLVATGTRELLLIAQDLSAY---GVDLRHRESFWGDRLVKAELKDLLSHMAELGA 223

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
            +RL Y   +P       + A G +   +PYL +P+Q  S+RIL+ M R      + + +
Sbjct: 224 WIRLHYVYPYPHVRELLPLMAEGKV---LPYLDVPLQHASERILRLMRRPGGYQSHLKTL 280

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
              R V P++AI S FIVGFPGET++DF+  +D + +    +   F YSP  G   + + 
Sbjct: 281 KAWREVVPELAIRSSFIVGFPGETEEDFQILLDFLQEAELDRVGVFTYSPVEGAEANALS 340

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWL 435
             V E VK ER   L +   E  +  N + VG+ +EVL+++   E G  VGR    SP +
Sbjct: 341 GHVPEEVKEERKARLMEVQAEISLRKNQSFVGKTLEVLVDEL-PEPGLAVGRSYRDSPGI 399

Query: 436 QSVVL--NSKNHNIGDIIKVRITDVKISTLYG 465
             +V         +G+ I VRIT      LYG
Sbjct: 400 DGLVYVETDGTARVGERIPVRITRADTYDLYG 431


>gi|183179613|ref|ZP_02957824.1| conserved hypothetical protein [Vibrio cholerae MZO-3]
 gi|229524596|ref|ZP_04414001.1| ribosomal protein S12p Asp88 methylthiotransferase [Vibrio cholerae
           bv. albensis VL426]
 gi|254285814|ref|ZP_04960776.1| conserved hypothetical protein [Vibrio cholerae AM-19226]
 gi|297581460|ref|ZP_06943383.1| conserved hypothetical protein [Vibrio cholerae RC385]
 gi|150423996|gb|EDN15935.1| conserved hypothetical protein [Vibrio cholerae AM-19226]
 gi|183013024|gb|EDT88324.1| conserved hypothetical protein [Vibrio cholerae MZO-3]
 gi|229338177|gb|EEO03194.1| ribosomal protein S12p Asp88 methylthiotransferase [Vibrio cholerae
           bv. albensis VL426]
 gi|297534298|gb|EFH73136.1| conserved hypothetical protein [Vibrio cholerae RC385]
          Length = 470

 Score =  179 bits (455), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 132/456 (28%), Positives = 225/456 (49%), Gaps = 46/456 (10%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ DS R+     ++GYE VNS  D+D++++NTC   + A ++    +G     
Sbjct: 39  SLGCPKNLVDSERILTQLRTEGYEIVNSYHDSDVVIVNTCGFIDSAVQESLDTIGEA--- 95

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               +KE G   V+V GC+   E +EI +  P V  + GP  Y  + E + +        
Sbjct: 96  ----LKENGK--VIVTGCLGARE-DEIRQVHPNVLGITGPHAYQNVLEHVHQY------- 141

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
                  + F  L + D G        A+L I EGC+  CTFC++P  RG  +SR + ++
Sbjct: 142 -APKPAHNPFTSL-VPDHGVKLTPKHYAYLKISEGCNHRCTFCIIPSMRGDLVSRPVGEI 199

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE-----------KCTFSDLLYSLSEIKG 259
           + EA +L + GV E+ ++ Q+ +A+   G+D +           +     L   L ++  
Sbjct: 200 IGEAERLKNAGVKELLVISQDTSAY---GVDTKHSLGFANGSPVRHNIKALSEELGKMGI 256

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
            VRL Y   +P       + A G +   +PYL +P Q  S R+LK M R   A    + I
Sbjct: 257 WVRLHYVYPYPHVDEIIPLMAEGKV---LPYLDIPFQHASPRVLKMMKRPGQAERTLERI 313

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            + R + P++ I S FIVGFPGET++DF+  +D + +    +   FKYSP  G   + + 
Sbjct: 314 KKWREICPELVIRSTFIVGFPGETEEDFQILLDWLKEAQLDRVGCFKYSPVEGAAANEIE 373

Query: 380 EQVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPW 434
           +Q+ E+VK    ER + +Q+++   ++      +G  ++VLI++  +E   G+    +P 
Sbjct: 374 DQIPEDVKQDRFERFMLVQQEISAAKLQKR---IGSTMQVLIDEVDEEGAIGRTYADAPE 430

Query: 435 LQSVV-LNSK-NHNIGDIIKVRITDVKISTLYGELV 468
           +  +V LN + N   G+++ V I       L+G ++
Sbjct: 431 IDGLVYLNGETNLKPGELVNVVIEHADEYDLWGSVL 466


>gi|295115538|emb|CBL36385.1| MiaB-like tRNA modifying enzyme [butyrate-producing bacterium
           SM4/1]
          Length = 443

 Score =  179 bits (455), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 139/444 (31%), Positives = 228/444 (51%), Gaps = 37/444 (8%)

Query: 33  GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92
           GC++N Y++  M+ M    GYE V   + AD+ V+NTC +   A +K    L R + +  
Sbjct: 10  GCKVNAYETEAMQQMLEDAGYEIVPFREGADVYVINTCSVTNVADKKSRQMLHRAKKMNP 69

Query: 93  SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVD- 151
           S +       VV AGC  QA GEE L++   V++V+G      L E+LER        D 
Sbjct: 70  SAV-------VVAAGCYVQAAGEE-LKKDEAVDLVIGNNRKKDLVEVLERYFNEHEGTDD 121

Query: 152 -TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
             D     ++E+L I     + +    AF+ +Q+G ++FC++C++PYTRG   SR +  V
Sbjct: 122 IIDIGKTSEYEKLHIRKIADHTR----AFIKVQDGYNQFCSYCIIPYTRGRVRSRPMEDV 177

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT--------FSDLLYSLSEIKGLVR 262
           V E   L  +G  EI L G +++++   G D ++             L+  L  I G+ R
Sbjct: 178 VQEVEALAASGYKEIVLTGIHLSSY---GADFKRTAENPEAAADLLSLIVRLDRIPGIER 234

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R  +  PR ++D   +    L    P+ HL +QSG +  LK MNR +T  +Y    + +
Sbjct: 235 IRLGSLEPRIITDEFAETLAGLKSFCPHFHLSLQSGCNETLKRMNRHYTTEDYEARCEIL 294

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R    + AI++D IVGFP ET+++F  T   + +I + +   FKYS R GT  + M  QV
Sbjct: 295 RRYFHNPAITTDVIVGFPQETEEEFEETRQFLKRIHFYEMHIFKYSRREGTRAAVMEGQV 354

Query: 383 DENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK--LVGRS-PWLQ 436
            E  KAER   LL L++++    + +    +G+  EVL+E+     G+  +VG +  +++
Sbjct: 355 PEPKKAERSDILLALEEQM---SLEYRRTFLGKEEEVLLEERISVDGEDYMVGHTRQYVK 411

Query: 437 SVVLNS---KNHNIGDIIKVRITD 457
           +VV      KN  +  +++  +TD
Sbjct: 412 AVVPYREGLKNVTVRGVMERMVTD 435


>gi|325923369|ref|ZP_08185039.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Xanthomonas
           gardneri ATCC 19865]
 gi|325546139|gb|EGD17323.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Xanthomonas
           gardneri ATCC 19865]
          Length = 457

 Score =  179 bits (455), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 140/460 (30%), Positives = 215/460 (46%), Gaps = 44/460 (9%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  FV S GC   + DS R+      +GY+ V S D AD++V+NTC   + A  +    
Sbjct: 6   PKVGFV-SLGCPKALVDSERILTQLRVEGYDIVPSYDAADVVVVNTCGFIDSAVTESLDA 64

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G   N             V+V GC+ +   E+I    P V  V GPQ Y  + E +  A
Sbjct: 65  IGEAMNANGK---------VIVTGCLGK-RPEQIREAYPQVLAVSGPQDYQSVMEAVHAA 114

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
              +          D F  L + D G        A+L I EGC+  C+FC++P  RG   
Sbjct: 115 LPPRH---------DPFVDL-VPDYGIKLTPRHYAYLKISEGCNHRCSFCIIPSMRGDLA 164

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS---------L 254
           SR + +V+ EA +L+  GV E+ ++ Q+ +A+ G  L   +  + D +Y          L
Sbjct: 165 SRPVDEVLREAERLVRGGVKELLVVSQDTSAY-GVDLKYAERPWRDRMYQTRMKALCEGL 223

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
           SE+    RL Y   +P       + A G L   +PYL +P Q  S RILK M R     +
Sbjct: 224 SELGVWTRLHYVYPYPHVDDVIPLMAEGKL---LPYLDIPFQHASPRILKLMKRPGAVEK 280

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
             + + R +++ P+I + S FIVGFPGETD +F + +D +D+    +  +F YSP  G  
Sbjct: 281 TLERVQRWKAMCPEITVRSTFIVGFPGETDAEFESLLDFLDQAQLDRVGAFAYSPVQGAS 340

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS-- 432
            + + + V E +K ERL     K  E   +  +A +G + + L++    E    V RS  
Sbjct: 341 ANALPDPVPEELKQERLARFMAKQAEISAARLEAKIGSVQQCLVDV--IEDDIAVARSRA 398

Query: 433 --PWLQSVVLNSKNH----NIGDIIKVRITDVKISTLYGE 466
             P +  +V           IGD++ V ITD     L+G+
Sbjct: 399 DAPEIDGLVHIQNGGELGLKIGDLVDVEITDSDEHDLFGD 438


>gi|307718563|ref|YP_003874095.1| hypothetical protein STHERM_c08730 [Spirochaeta thermophila DSM
           6192]
 gi|306532288|gb|ADN01822.1| hypothetical protein STHERM_c08730 [Spirochaeta thermophila DSM
           6192]
          Length = 449

 Score =  179 bits (455), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 137/458 (29%), Positives = 214/458 (46%), Gaps = 43/458 (9%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  +   F   GY         DL ++NTC +  K+ +K    + +I   
Sbjct: 9   TLGCKLNQYETEGIAAAFREAGYRIGEFPQSGDLYIVNTCTVTSKSEQKARRIIRKI--- 65

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEI--LRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
                +E  + LVVV GC  Q E +E+  L    I   +       +LP          R
Sbjct: 66  ----AREHPEALVVVTGCYPQLERDEVQALSDRVIALPLEEKPLLLQLP---------SR 112

Query: 149 VVDTDYSVEDKFERL-------SIVDGGYNR--------KRGVTAFLTIQEGCDKFCTFC 193
           + D D     + ERL       + +DG   R             +FL IQ+GCD+ C +C
Sbjct: 113 LQDEDLD-PSRVERLLQEIRTQAPLDGTAGRFLYRVDRPAFHARSFLKIQDGCDRRCAYC 171

Query: 194 VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS 253
            VP  RG  +S   +++++  ++L   GV EI L G N+  +R      E      LL  
Sbjct: 172 RVPLARGRAVSDDPARILERVQELEGRGVREIVLTGVNLAQYRW-----ESLDLGGLLLH 226

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
           L      +R R ++  P   S+ L +A     +  P+ HLPVQSGS+R+LK M R +TA 
Sbjct: 227 LLSHTSRLRFRISSLEPEGFSEALWEALSSPRIC-PHFHLPVQSGSNRVLKRMGRWYTAE 285

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
           E   +I R+R V PD  IS DFIVGFPGET +DF AT   +D+  ++ A  F+YSPR GT
Sbjct: 286 EISALIARLREVSPDPFISGDFIVGFPGETREDFEATCAFLDENAFSGAHLFRYSPRPGT 345

Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSP 433
                   V E V  ER   L   +     ++     G+++EV+ E+  ++ G+      
Sbjct: 346 AAYASKAHVPERVAKEREEALHACVEVYASAYLARQRGRVVEVIPEQEREKAGQRYAVGT 405

Query: 434 WLQSVVLNSKNHNIGDIIKVRITDV---KISTLYGELV 468
               +++ +     G+ ++V + DV   +  ++YG  V
Sbjct: 406 SENYLLVWAPVPLEGETVRVEVGDVVEGEPRSVYGSPV 443


>gi|206901571|ref|YP_002251173.1| hypothetical protein DICTH_1354 [Dictyoglomus thermophilum H-6-12]
 gi|238065337|sp|B5YF65|RIMO_DICT6 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|206740674|gb|ACI19732.1| conserved hypothetical protein [Dictyoglomus thermophilum H-6-12]
          Length = 440

 Score =  179 bits (455), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 129/449 (28%), Positives = 217/449 (48%), Gaps = 31/449 (6%)

Query: 33  GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92
           GC  N  D+  +       GY     + +ADL+++NTC   + A ++    +  ++  K 
Sbjct: 10  GCSKNQVDTEILMGFLKELGYTFTPYLGEADLVLVNTCAFIKPAWQEAEENINFLKEYKE 69

Query: 93  SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDT 152
           +      +L +VV GC  +   +E+  R P V++ +GP  Y +   L+     G+R + +
Sbjct: 70  N----NKNLKIVVTGCYVERFEKELEDRYPFVDLFIGPGEYDKFVSLITSN--GERKIHS 123

Query: 153 D----YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
                +    K  R+ I    +        ++ I EGC+ FC++C +P+ RG   SRS+ 
Sbjct: 124 SPASSFMYTHKMPRVLISPNFW-------VYVKISEGCNNFCSYCTIPFIRGRLRSRSID 176

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
            ++ E   L+  GV EI L+ Q+   + G+ L G K    DLL S+  IKG   +R   S
Sbjct: 177 DIIKEVEILVQKGVKEINLIAQDTTRY-GEDLYG-KSALVDLLKSIENIKGDFYVRILYS 234

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
           +P  ++  LI      + ++PY  +P+Q  +D ILK MNR +   +  ++   IR    D
Sbjct: 235 YPSRVTKDLINFIKVSEKVVPYFDIPIQHVNDEILKKMNRSYKKDDIIRVWSTIRENFED 294

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
             I +  +VGFPGET+++F   +  +    + +  +F Y    GT   N   Q+DE+ K 
Sbjct: 295 AVIRTTVMVGFPGETEENFEELIAFIKAYPFDRLGAFTYYNEEGTISKNFDGQIDEDEKI 354

Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRS----PWLQSVVL--- 440
            R   L    +E     N   +G+  +V+IE    EKGK  +GRS    P +  V++   
Sbjct: 355 RRYDILMSTQKEISKKLNAKLLGREFDVIIE---NEKGKYFIGRSWREAPEVDGVIMIPK 411

Query: 441 -NSKNHNIGDIIKVRITDVKISTLYGELV 468
             S++ +IGD ++V+I   +   L GELV
Sbjct: 412 EGSRSISIGDRVRVKIKKYRAYDLLGELV 440


>gi|187476722|ref|YP_784746.1| ribosomal protein S12 methylthiotransferase [Bordetella avium 197N]
 gi|115421308|emb|CAJ47813.1| putative radical SAM protein [Bordetella avium 197N]
          Length = 442

 Score =  179 bits (454), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 141/468 (30%), Positives = 229/468 (48%), Gaps = 58/468 (12%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
            P+  FV S GC   + DS R+     ++GYE     +DAD++V+NTC   + A  +   
Sbjct: 7   APRVGFV-SLGCPKALVDSERILTQLRTEGYEVTPEYNDADVVVVNTCGFIDSAKAESLD 65

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +G         + E G   V+V GC+   E   I    P V  V GPQ Y ++ + +  
Sbjct: 66  AIGEA-------LAENGK--VIVTGCMG-VEESAIRSVHPSVLAVTGPQQYEQVVQAVHS 115

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           A   +         +D    + +V   G        A+L I EGC+  C+FC++P  RG 
Sbjct: 116 AAPPR---------QDHNPYVDLVPPQGVKLTPRHYAYLKISEGCNHRCSFCIIPSMRGN 166

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDL 250
            +SR +  V++EA +L+  GV E+ ++ Q+ +A           W G+ +   K   ++L
Sbjct: 167 LVSRPVGDVLNEAERLVKAGVKELLVISQDTSAYGVDLKYRSGFWNGRPV---KTRMTEL 223

Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
             +LSE+    RL Y   +P       + A G +   +PYL +P Q  S RILK+M R  
Sbjct: 224 CDALSELGVWTRLHYVYPYPSVDDIIPLMAEGKV---LPYLDIPFQHASPRILKAMKR-- 278

Query: 311 TAYEYRQI--IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
            A+E + +  I + R+  PD+ I S FIVGFPGET++DF+  +D + +    +   F+YS
Sbjct: 279 PAFEDKTLARIHQWRAACPDLTIRSTFIVGFPGETEEDFQYLLDWMSEAQLDRVGCFQYS 338

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDA----CVGQIIEVLIEKHGKE 424
           P  G P + +   V + VK ER     ++  E Q + + A     +G+ I+VLI++  ++
Sbjct: 339 PVEGAPANALAGIVPDEVKQERW----ERFMEHQQAISAARLQTRIGREIDVLIDEVDED 394

Query: 425 KGKLVGRS----PWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGE 466
               VGRS    P +   V  S +  +  GD+++VR+TD     L+ +
Sbjct: 395 GA--VGRSSADAPEIDGCVYVSSDTPVKPGDMVRVRVTDADEYDLWAD 440


>gi|319405657|emb|CBI79280.1| putative enzyme [Bartonella sp. AR 15-3]
          Length = 437

 Score =  179 bits (454), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 146/465 (31%), Positives = 219/465 (47%), Gaps = 47/465 (10%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + P+  FV S GC   + DS R+     S+GYE  N    ADL+++NTC           
Sbjct: 2   VAPRISFV-SLGCPKALVDSERIITRLRSEGYEISNKHKGADLVIVNTC----------- 49

Query: 82  SFLGRIRNLKNSRIKEG--GDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL 139
            F+   RN   + I E    +  V+V GC+  A+   IL+  P V  + GPQ Y    E 
Sbjct: 50  GFIDSARNESLANIDEAIKNNGKVIVTGCLG-AQPNIILQAYPNVFAITGPQDY----ES 104

Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           + RA     V      V D F  L    G     R   A+L I EGC   C+FC++P  R
Sbjct: 105 VIRA-----VHTVIPPVHDPFVDLVPPQGIRLTPRHY-AYLKISEGCSNRCSFCIIPTLR 158

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFS 248
           G  ISR +S V+ EA KL+  GV E+ ++ Q+  A           W+ + +   K  F 
Sbjct: 159 GNLISRPISDVLHEAEKLVQAGVKELLVISQDTGAYGIDLKYAESVWKNRII---KTKFL 215

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
           DL   L E+   VR+ Y   +P       + A G    ++PYL +P Q  S  +L++M R
Sbjct: 216 DLCRELGEMGIWVRMHYLYPYPHIDEAIELMAAGK---ILPYLDIPFQHASPTVLRNMKR 272

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
                +  + I+R R + PD+ + S FIVGFPGET++DF   ++ +++    +A  FKY 
Sbjct: 273 PAHVEKISRRIERWRKICPDLTLRSTFIVGFPGETNEDFNMLLEWLEEAKIERAGCFKYE 332

Query: 369 PRLGTPGSNM-LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGK-EK 425
              G   +++ LE + E VK +R      K ++         +G+ ++VLI E  GK  K
Sbjct: 333 AVQGAVANDLGLENITEEVKEQRWHRFMTKQQKISAHLLKKKIGKRLQVLIDETQGKIAK 392

Query: 426 GKLVGRSPWLQSVVLNSKNH--NIGDIIKVRITDVKISTLYGELV 468
           G+    SP +  VV  S      IG+ + V+I       LYG ++
Sbjct: 393 GRSKYDSPEIDGVVHISSRRPLRIGEFVTVKIEQSDSYDLYGNVI 437


>gi|78485658|ref|YP_391583.1| hypothetical protein Tcr_1314 [Thiomicrospira crunogena XCL-2]
 gi|123741577|sp|Q31G14|RIMO_THICR RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|78363944|gb|ABB41909.1| MiaB-like tRNA modifying enzyme [Thiomicrospira crunogena XCL-2]
          Length = 453

 Score =  179 bits (454), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 135/441 (30%), Positives = 214/441 (48%), Gaps = 42/441 (9%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC     DS R+     ++GY   NS ++AD +++NTC   + A ++    +G   + 
Sbjct: 12  SLGCPKATVDSERILTQLKAEGYHLTNSYEEADAVIVNTCGFIDSAVQESLDTIGEALD- 70

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
           +N R        V+V GC+   +G  I +  P V  V GP  Y  +   +  A    +  
Sbjct: 71  ENGR--------VIVTGCLGAKDGV-IEKVHPSVLAVSGPAAYEEVLTAVHEAIAPPK-- 119

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
                  D F  L +   G        A+L I EGC+  CTFC++P  RG  +SR +S V
Sbjct: 120 ------HDPFVDL-VPPQGIKLTPKHFAYLKISEGCNHRCTFCIIPSMRGNLVSRPVSDV 172

Query: 211 VDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYSLSEIKGLVR 262
           V EAR+L + GV E+ ++ Q+  A+      + +  DG   K +   L  +LSE+   VR
Sbjct: 173 VAEARRLKEAGVKELLVVSQDTAAYGVDVKYKTEFADGRPTKTSMFGLAEALSELGIWVR 232

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           L Y   +P       + A G L   +PYL +P+Q     ILK+M R     +  + I + 
Sbjct: 233 LHYVYPYPNVEDVIPLMAEGKL---LPYLDMPLQHADPDILKAMKRPGNVDKTLERIKKW 289

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R   PD+ I S FIVGFPGET+  F+  +D +++    +   F+YSP  G   +++ E V
Sbjct: 290 REQVPDLTIRSTFIVGFPGETEAQFQNLLDFIEEAQLDRVGCFQYSPVEGAVANDLAEPV 349

Query: 383 DENVKAERLLCLQKKLREQQVSFN--DACVGQIIEVLIEKHGKEKGKLVGRS----PWLQ 436
            + VK ER     +   +QQ+S N   A +G+ I+VL+++  +E    + RS    P + 
Sbjct: 350 PDEVKQERFDRFMQ--LQQQISANKMQAKIGKTIQVLVDEVDEEGA--IARSKADAPEID 405

Query: 437 SVVLNSKNH--NIGDIIKVRI 455
            +V   + H  N GD ++V +
Sbjct: 406 GMVFIPEGHHLNPGDFVEVEV 426


>gi|21243462|ref|NP_643044.1| ribosomal protein S12 methylthiotransferase [Xanthomonas axonopodis
           pv. citri str. 306]
 gi|81800989|sp|Q8PJ10|RIMO_XANAC RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|21109018|gb|AAM37580.1| conserved hypothetical protein [Xanthomonas axonopodis pv. citri
           str. 306]
          Length = 457

 Score =  179 bits (454), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 140/460 (30%), Positives = 216/460 (46%), Gaps = 44/460 (9%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  FV S GC   + DS R+      +GY+ V S D AD++V+NTC   + A  +    
Sbjct: 6   PKVGFV-SLGCPKALVDSERILTQLRVEGYDIVPSYDAADVVVVNTCGFIDSAVTESLDA 64

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G   N             V+V GC+ +   E+I    P V  V GPQ Y  + E +  A
Sbjct: 65  IGEAMNANGK---------VIVTGCLGK-RPEQIREAYPQVLAVSGPQDYQSVMEAVHAA 114

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
              +          D F  L + D G        A+L I EGC+  C+FC++P  RG  +
Sbjct: 115 LPPRH---------DPFVDL-VPDYGIKLTPRHYAYLKISEGCNHRCSFCIIPSMRGDLV 164

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS---------L 254
           SR + +V+ EA +L+  GV E+ ++ Q+ +A+ G  L   +  + D LY          L
Sbjct: 165 SRPVDEVLREAERLVRGGVKELLVVSQDTSAY-GVDLKYAERPWRDRLYQTRMKALCEGL 223

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
           SE+    RL Y   +P       + A G L   +PYL +P Q  S RILK M R     +
Sbjct: 224 SELGVWTRLHYVYPYPHVDDVIGLMAEGKL---LPYLDIPFQHASPRILKLMKRPGAVEK 280

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
             + + R +++ P+I + S FIVGFPGETD +F + +D +D+    +  +F YSP  G  
Sbjct: 281 TLERVQRWKAMCPEITVRSTFIVGFPGETDAEFESLLDFLDQAQLDRVGAFAYSPVDGAS 340

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS-- 432
            + + +QV E VK ERL     K  +      ++ +G + + L++    E    V RS  
Sbjct: 341 ANALPDQVPEEVKQERLARFMAKQAQISALRLESKIGSVQQCLVDV--IEDDIAVARSRA 398

Query: 433 --PWLQSVVLNSKNH----NIGDIIKVRITDVKISTLYGE 466
             P +  +V           +GD++ V ITD     L+G+
Sbjct: 399 DAPEIDGLVHIQNGGELGLKVGDLVDVEITDSDEHDLFGD 438


>gi|261211176|ref|ZP_05925465.1| ribosomal protein S12p Asp88 methylthiotransferase [Vibrio sp.
           RC341]
 gi|260839677|gb|EEX66288.1| ribosomal protein S12p Asp88 methylthiotransferase [Vibrio sp.
           RC341]
          Length = 470

 Score =  179 bits (454), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 131/456 (28%), Positives = 225/456 (49%), Gaps = 46/456 (10%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ DS R+     ++GYE VNS  D+D++++NTC   + A ++    +G     
Sbjct: 39  SLGCPKNLVDSERILTQLRTEGYEIVNSYHDSDVVIVNTCGFIDSAVQESLDTIGEA--- 95

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               +KE G   V+V GC+   E +EI +  P V  + GP  Y  + E + +        
Sbjct: 96  ----LKENGK--VIVTGCLGARE-DEIRQVHPNVLGITGPHAYQNVLEHVHQY------- 141

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
                  + F  L + D G        A+L I EGC+  CTFC++P  RG  +SR + ++
Sbjct: 142 -APKPAHNPFTSL-VPDHGVKLTPKHYAYLKISEGCNHRCTFCIIPSMRGDLVSRPVGEI 199

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE-----------KCTFSDLLYSLSEIKG 259
           + EA +L + GV E+ ++ Q+ +A+   G+D +           +     L   L ++  
Sbjct: 200 IGEAERLKNAGVKELLVISQDTSAY---GVDTKHSLGFANGSPVRHNIKALSEELGKMGI 256

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
            +RL Y   +P       + A G +   +PYL +P Q  S R+LK M R   A    + I
Sbjct: 257 WIRLHYVYPYPHVDEIIPLMAEGKV---LPYLDIPFQHASPRVLKMMKRPGQAERTLERI 313

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            + R + P++ I S FIVGFPGET++DF+  +D + +    +   FKYSP  G   + + 
Sbjct: 314 KKWREICPELVIRSTFIVGFPGETEEDFQILLDWLKEAQLDRVGCFKYSPVEGAAANEIE 373

Query: 380 EQVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPW 434
           +Q+ E+VK    ER + +Q+++   ++      +G  ++VLI++  +E   G+    +P 
Sbjct: 374 DQIPEDVKQDRFERFMLVQQEISAAKLQKR---IGSTMQVLIDEVDEEGAIGRTYADAPE 430

Query: 435 LQSVV-LNSK-NHNIGDIIKVRITDVKISTLYGELV 468
           +  +V LN + N   G+++ V I       L+G ++
Sbjct: 431 IDGLVYLNGETNLKPGELVNVVIEHADEYDLWGSVL 466


>gi|116622276|ref|YP_824432.1| MiaB-like tRNA modifying enzyme [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116225438|gb|ABJ84147.1| MiaB-like tRNA modifying enzyme [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 444

 Score =  179 bits (454), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 114/397 (28%), Positives = 197/397 (49%), Gaps = 19/397 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +FFV+++GC+    D   +E +  ++G E   +   ADL+VLNTC +   A + V   + 
Sbjct: 3   KFFVQNFGCRATQADGAALESLLAAKGLEATGARAGADLVVLNTCTVTASADDDVRQTIR 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R+        +E     ++V GC AQ   EE++   P V  VVG     ++ E++  A  
Sbjct: 63  RVH-------RENPAARILVTGCYAQRAPEELIAL-PGVEWVVGNSHKTQIAEIVTAAPV 114

Query: 146 GKRVVDTDYSVEDKFER-----LSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
            +     +  + D F +       + D   +R R     L IQ+GC+  C+FC++P+ RG
Sbjct: 115 TEAFYHGNIHIGDIFAQHDFLSAPVEDAAGDRTR---PNLKIQDGCNNRCSFCIIPFVRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
              S   +QVV++ R L      E+ L G N+  W  +   G     + LL  L     +
Sbjct: 172 RSRSAPAAQVVEQVRALAAR-YHEVVLSGINLGRWGRE--PGSSMRLAGLLRLLLAETDV 228

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            RLR ++  P D S+ L+        +  ++H P+QSGSDR+L+ M+R++    Y   + 
Sbjct: 229 ARLRLSSVEPMDFSEDLLHLMAASPRIANHVHAPLQSGSDRVLRRMHRKYRPRHYADRVL 288

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           + R++ PD AI +D +VGFPGETD +F  +   ++++ +     F YS R GTP +    
Sbjct: 289 KARALMPDGAIGADVMVGFPGETDAEFEESRRFIEQLPFTYLHVFTYSERPGTPAAESEH 348

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVL 417
            V   V+ ER   L++    + ++F ++ +G+ +  +
Sbjct: 349 PVPMPVRKERNRVLRELAAAKNLAFRESMIGRTLSAV 385


>gi|310819551|ref|YP_003951909.1| MiaB-like tRNA modifying enzyme YliG [Stigmatella aurantiaca
           DW4/3-1]
 gi|309392623|gb|ADO70082.1| MiaB-like tRNA modifying enzyme YliG [Stigmatella aurantiaca
           DW4/3-1]
          Length = 459

 Score =  179 bits (454), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 130/449 (28%), Positives = 217/449 (48%), Gaps = 29/449 (6%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC  N  DS  M      +GY  V    +A +IV+NTC     A ++    +  +   
Sbjct: 2   TLGCPKNRVDSEVMLGTLKQRGYRLVQEPAEAQVIVVNTCAFIGPAKQESVDSILEMAEY 61

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
           K S    G    +VV GC++Q  G E+ +  P V+  +G   Y ++ +LL      ++V+
Sbjct: 62  KKS----GACSTLVVTGCLSQRHGGELAQEMPEVDHFLGTSAYAQIGDLLAAEASPRQVI 117

Query: 151 -DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209
            D DY    +  R        N     TA+L + EGCD  C FC++P  RG + SR ++ 
Sbjct: 118 PDPDYIHNAETPR-------ENSMPSYTAYLKVSEGCDNACAFCIIPTLRGGQRSRPIAD 170

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK-GLVRLRYTTS 268
           ++ EA +L D GV E+ L+ Q++ A+ G  L G K    DLL  L ++    +RL Y  +
Sbjct: 171 IIAEATRLADQGVQELNLVAQDLTAY-GHDLPG-KPKLHDLLKELVKVDVRWIRLHY--A 226

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
           +PR   D LI+       +  YL +P+Q  SD++L SM R   +     ++ ++R+  P 
Sbjct: 227 YPRIFPDELIEVMATEKKIAKYLDMPLQHASDKLLTSMKRGRNSQFLTDLLAKLRARVPG 286

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           + + +  IVG PGET++DF    + V    + +   F+YS   GT   +M  ++ +    
Sbjct: 287 LVMRTSLIVGLPGETEEDFELLKEFVKTQRFERLGVFQYSDEEGTAAYDMPNKIPQKTIE 346

Query: 389 ER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-----GKLVGRSPWLQ-SVV 439
            R   ++ +QK++  +Q   N   VG+ IEVL+E    E      G+  G++P +   V 
Sbjct: 347 RRWREIMAIQKRINREQ---NKKLVGKRIEVLVEGTSPETEHLLVGRHEGQAPEIDGQVY 403

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
           +N      G+ + + +T+     L G +V
Sbjct: 404 INDGLAYPGEFVTLEVTEAHDYDLVGRVV 432


>gi|227082736|ref|YP_002811287.1| hypothetical protein VCM66_2540 [Vibrio cholerae M66-2]
 gi|298500557|ref|ZP_07010361.1| MiaB-like tRNA modifying enzyme YliG [Vibrio cholerae MAK 757]
 gi|227010624|gb|ACP06836.1| conserved hypothetical protein [Vibrio cholerae M66-2]
 gi|297540726|gb|EFH76783.1| MiaB-like tRNA modifying enzyme YliG [Vibrio cholerae MAK 757]
          Length = 470

 Score =  179 bits (454), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 132/456 (28%), Positives = 224/456 (49%), Gaps = 46/456 (10%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ DS R+     ++GYE VNS  D+D++++NTC   + A ++    +G     
Sbjct: 39  SLGCPKNLVDSERILTQLRTEGYEIVNSYHDSDVVIVNTCGFIDSAVQESLDTIGEA--- 95

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               +KE G   V+V GC+   E +EI +  P V  + GP  Y  + E + +        
Sbjct: 96  ----LKENGQ--VIVTGCLGARE-DEIRQVHPNVLGITGPHAYQNVLEHVHQY------- 141

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
                  + F  L + D G        A+L I EGC+  CTFC++P  RG  +SR + ++
Sbjct: 142 -APKPAHNPFTSL-VPDHGVKLTPKHYAYLKISEGCNHRCTFCIIPSMRGDLVSRPVGEI 199

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE-----------KCTFSDLLYSLSEIKG 259
           + EA +L + GV E+ ++ Q+ +A+   G+D +           +     L   L ++  
Sbjct: 200 IGEAERLKNAGVKELLVISQDTSAY---GVDTKHSLGFANGSPVRHNIKALSEELGKMGI 256

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
            VRL Y   +P       + A G +   +PYL +P Q  S R+LK M R   A    + I
Sbjct: 257 WVRLHYVYPYPHVDEIIPLMAEGKV---LPYLDIPFQHASPRVLKMMKRPGQAERTLERI 313

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            + R + P++ I S FIVGFPGET++DF+  +D + +    +   FKYSP  G   + + 
Sbjct: 314 KKWREICPELVIRSTFIVGFPGETEEDFQILLDWLKEAQLDRVGCFKYSPVEGAAANEIE 373

Query: 380 EQVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPW 434
           +Q+ E+VK    ER + +Q+++   ++      +G  ++VLI++   E   G+    +P 
Sbjct: 374 DQIPEDVKQDRFERFMLVQQEISAAKLQKR---IGSTMQVLIDEVDDEGAIGRTYADAPE 430

Query: 435 LQSVV-LNSK-NHNIGDIIKVRITDVKISTLYGELV 468
           +  +V LN + N   G+++ V I       L+G ++
Sbjct: 431 IDGLVYLNGETNLKPGELVNVVIEHADEYDLWGSVL 466


>gi|194366638|ref|YP_002029248.1| ribosomal protein S12 methylthiotransferase [Stenotrophomonas
           maltophilia R551-3]
 gi|238066608|sp|B4SQX0|RIMO_STRM5 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|194349442|gb|ACF52565.1| MiaB-like tRNA modifying enzyme YliG [Stenotrophomonas maltophilia
           R551-3]
          Length = 453

 Score =  179 bits (454), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 138/463 (29%), Positives = 221/463 (47%), Gaps = 50/463 (10%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  FV S GC   + DS R+     S+GY+ V S D AD++V+NTC   + A  +    
Sbjct: 6   PKVGFV-SLGCPKALVDSERILTQLRSEGYDIVPSYDSADVVVVNTCGFIDSAVTESLDA 64

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G   N +N +        V+V GC+ +   E+I    P V  V GPQ Y  + E +  A
Sbjct: 65  IGEAMN-QNGK--------VIVTGCLGK-RPEQIREAYPNVLAVSGPQDYQSVMEAVHEA 114

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
              K          D F  L + D G        A+L I EGC+  C+FC++P  RG  +
Sbjct: 115 LPPKH---------DPFVDL-VPDYGIKLTPRHYAYLKISEGCNHKCSFCIIPSMRGKLV 164

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLY 252
           SR + +V+ EA +L+  GV E+ ++ Q+ +A           WR K     +     L  
Sbjct: 165 SRPVDEVLREAERLVRGGVRELLVVSQDTSAYGVDVKYAEKMWRDKAY---QTRLKALCE 221

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
            LSE+   VR+ Y   +P    D ++    + + ++PYL +P Q  S RIL+ M R    
Sbjct: 222 GLSELDAWVRMHYVYPYPH--VDEVVPLMAE-NRILPYLDIPFQHASPRILRLMKRPGAV 278

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
            +  + +   R + PDI + S FIVGFPGET+ +F   +  +D+    +  +F YSP  G
Sbjct: 279 EKTLERVQNWRRIAPDITVRSTFIVGFPGETEAEFEELLSFLDEAQLDRVGAFAYSPVEG 338

Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS 432
              +++ + V E VK ERL    +K  +   +  +A +G + + L++    E    V RS
Sbjct: 339 ATANDLPDAVPEEVKQERLARFMEKQAQISAARLEAKIGTVQQCLVD--AIEGDIAVARS 396

Query: 433 ----PWLQSVVLNSKNHN-----IGDIIKVRITDVKISTLYGE 466
               P +  +V + +N +     +G+ + V IT+     LYG+
Sbjct: 397 KADAPEIDGLV-HIQNADQVALRVGEFVDVEITESDDHDLYGD 438


>gi|162452546|ref|YP_001614913.1| hypothetical protein sce4270 [Sorangium cellulosum 'So ce 56']
 gi|238066605|sp|A9F1Y8|RIMO_SORC5 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|161163128|emb|CAN94433.1| hypothetical protein sce4270 [Sorangium cellulosum 'So ce 56']
          Length = 488

 Score =  179 bits (454), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 129/456 (28%), Positives = 223/456 (48%), Gaps = 36/456 (7%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC-HIREKAAEKVYSFLGRIRN 89
           S GC  N  DS  M  +  + G+  V+   +A++IV+NTC  I E   E + +     ++
Sbjct: 10  SLGCPKNRVDSEVMLGVARAAGFAHVDDAAEAEVIVVNTCGFIGEAKKESIDAIFEMAQH 69

Query: 90  LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL----ERARF 145
            ++   K      +VVAGC++Q   EE+ R  P V+  +G     +L  +L    ER   
Sbjct: 70  KEHGSCKR-----LVVAGCLSQRHPEELAREMPEVDHFLGSSDMLKLGRVLAGDAERMLV 124

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G      ++ ++    R     GG       +A++ I EGC++ C+FCV+P  RG + SR
Sbjct: 125 GN---PAEWLIQAGDPRTLSTPGG-------SAYVKIAEGCNRTCSFCVIPDLRGAQRSR 174

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAW----RGKGLDGEKCTFSDLLYSLSEIKGLV 261
            +  VV E  +L   GV EI L+ Q+  A+     G+   G + T + L+  ++++ G+ 
Sbjct: 175 PIPDVVREVEQLAAAGVREINLISQDTIAYGRDAAGRSEGGARATLAQLVERVADVPGVR 234

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
            +R    +P  M+D L++       ++PY+ +P+Q  +D +L+ M R H     R+++  
Sbjct: 235 WVRLFYLYPETMTDDLVELLAGHPRVVPYVDMPLQHAADAMLRRMRRGHGGDRLRRVVST 294

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R   PD+   + FIVG PGETD +F    D V    + +   F+YS    +    +  +
Sbjct: 295 LRERVPDLTFRTAFIVGHPGETDAEFEELCDFVRWAEFERVGVFRYSDEEASRSYELEGK 354

Query: 382 VDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-----GKLVGRSP 433
           V     A    RL+ LQ+++  ++ +   A +G+ +EVL+E    E      G+  G++P
Sbjct: 355 VPARTAASRYRRLMTLQRRISHKKSA---AMIGRELEVLVEGTSDEHEYVLMGRHAGQAP 411

Query: 434 WLQS-VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            +   V L+      G++ +VRIT      L GEL+
Sbjct: 412 EIDGQVYLSGGEVRPGEMCRVRITQASDYDLVGELL 447


>gi|146340736|ref|YP_001205784.1| ribosomal protein S12 methylthiotransferase [Bradyrhizobium sp.
           ORS278]
 gi|238065296|sp|A4YUI3|RIMO_BRASO RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|146193542|emb|CAL77559.1| conserved hypothetical protein [Bradyrhizobium sp. ORS278]
          Length = 445

 Score =  179 bits (454), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 142/467 (30%), Positives = 226/467 (48%), Gaps = 54/467 (11%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
            P+  FV S GC   + DS R+     ++GYE     D AD++++NTC   + A ++  +
Sbjct: 10  APKISFV-SLGCPKALVDSERIITRLRAEGYELARKHDGADVVIVNTCGFLDSAKQESLA 68

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +G       S + E G   V+V GC+  AE E+I +  P V  + GPQ Y  + + + R
Sbjct: 69  AIG-------SAMAENGK--VIVTGCMG-AEPEQIEQAYPGVLSITGPQQYESVLDAVHR 118

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           A         D           +   G        A+L I EGC+  C+FC++P  RG  
Sbjct: 119 ASPPVHNPHLDL----------VPPQGIKLTPRHYAYLKISEGCNNRCSFCIIPKLRGDL 168

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLL 251
           +SR  + V+ EA +L+  GV E+ ++ Q+ +A           W+ + +   +  F DL 
Sbjct: 169 VSRPAADVLREAERLVAAGVKELLVISQDTSAYGLDIKYAESPWKDRSV---RARFLDLA 225

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
             L E+   VRL Y   +P    D +I    D  VL PYL +P Q  S  +LK+M RR  
Sbjct: 226 RELGELGAWVRLHYVYPYPH--VDEVIGLMTDGKVL-PYLDIPFQHASPNVLKAM-RRPA 281

Query: 312 AYEYRQIIDRIRSVR---PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
           A +  + +DRI++ R   PD+A+ S FIVGFPGETD+DF   +D +D+    +   FKY 
Sbjct: 282 AQD--KTLDRIKAWRGACPDLALRSTFIVGFPGETDEDFAYLLDWLDEAEIDRLGCFKYE 339

Query: 369 PRLGTPGSNMLEQVDENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-- 423
           P  G   + +  QV + VK ER   L+  Q+K+  +++      VG   +++I++ G   
Sbjct: 340 PVAGATSNALPGQVPDEVKQERWNALMARQQKISARRLKRK---VGTRQQIIIDEVGPTV 396

Query: 424 EKGKLVGRSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468
            KG+    +P +   V  S    +  G+I+  +I       L+G + 
Sbjct: 397 AKGRSKADAPEIDGAVYLSSRRPLRAGEIVTAKIERADEYDLHGTVA 443


>gi|289669414|ref|ZP_06490489.1| hypothetical protein XcampmN_13164 [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 454

 Score =  179 bits (454), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 140/460 (30%), Positives = 215/460 (46%), Gaps = 44/460 (9%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  FV S GC   + DS R+      +GY+ V S D AD++V+NTC   + A  +    
Sbjct: 6   PKVGFV-SLGCPKALVDSERILTQLRVEGYDIVPSYDAADVVVVNTCGFIDSAVTESLDA 64

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G   N             V+V GC+ +   E+I    P V  V GPQ Y  + E +  A
Sbjct: 65  IGEAMNANGK---------VIVTGCLGK-RPEQIREAYPQVLAVSGPQDYQSVMEAVHAA 114

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
              +          D F  L + D G        A+L I EGC+  C+FC++P  RG  +
Sbjct: 115 LPPRH---------DPFVDL-VPDYGIKLTPRHYAYLKISEGCNHRCSFCIIPSMRGDLV 164

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS---------L 254
           SR + +V+ EA +L+  GV E+ ++ Q+ +A+ G  L   +  + D +Y          L
Sbjct: 165 SRPVDEVLREAERLVRGGVKELLVVSQDTSAY-GVDLKYAERPWRDRMYQTRMKALCEGL 223

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
           SE+    RL Y   +P       + A G L   +PYL +P Q  S RILK M R     +
Sbjct: 224 SELGVWTRLHYVYPYPHVDDVIPLMAEGKL---LPYLDIPFQHASPRILKLMKRPGAVEK 280

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
             + + R +++ P+I + S FIVGFPGETD +F + +D +D+    +  +F YSP  G  
Sbjct: 281 TLERVQRWKAMCPEITVRSTFIVGFPGETDAEFESLLDFLDQAQLDRVGAFAYSPVDGAG 340

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS-- 432
            + + + V E VK ERL     K  E      +A +G + + L++    E    V RS  
Sbjct: 341 ANALPDPVPEEVKQERLARFMAKQAEISALRLEAKIGSVQQCLVDL--IEDDIAVARSRA 398

Query: 433 --PWLQSVVLNSKNHN----IGDIIKVRITDVKISTLYGE 466
             P +  +V           +GD++ V ITD     L+G+
Sbjct: 399 DAPEIDGLVHIQNGGELGLKVGDLVDVEITDSDEHDLFGD 438


>gi|121729038|ref|ZP_01682039.1| conserved hypothetical protein [Vibrio cholerae V52]
 gi|147675671|ref|YP_001218113.1| hypothetical protein VC0395_A2197 [Vibrio cholerae O395]
 gi|262170131|ref|ZP_06037820.1| MiaB-like tRNA modifying enzyme YliG [Vibrio cholerae RC27]
 gi|238055296|sp|A5F514|RIMO_VIBC3 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|121628686|gb|EAX61157.1| conserved hypothetical protein [Vibrio cholerae V52]
 gi|146317554|gb|ABQ22093.1| conserved hypothetical protein [Vibrio cholerae O395]
 gi|227014508|gb|ACP10718.1| conserved hypothetical protein [Vibrio cholerae O395]
 gi|262021539|gb|EEY40251.1| MiaB-like tRNA modifying enzyme YliG [Vibrio cholerae RC27]
          Length = 470

 Score =  179 bits (453), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 132/456 (28%), Positives = 224/456 (49%), Gaps = 46/456 (10%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ DS R+     ++GYE VNS  D+D++++NTC   + A ++    +G     
Sbjct: 39  SLGCPKNLVDSERILTQLRTEGYEIVNSYHDSDVVIVNTCGFIDSAVQESLDTIGEA--- 95

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               +KE G   V+V GC+   E +EI +  P V  + GP  Y  + E + +        
Sbjct: 96  ----LKENGK--VIVTGCLGARE-DEIRQVHPNVLGITGPHAYQNVLEHVHQY------- 141

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
                  + F  L + D G        A+L I EGC+  CTFC++P  RG  +SR + ++
Sbjct: 142 -APKPAHNPFTSL-VPDHGVKLTPKHYAYLKISEGCNHRCTFCIIPSMRGDLVSRPVGEI 199

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE-----------KCTFSDLLYSLSEIKG 259
           + EA +L + GV E+ ++ Q+ +A+   G+D +           +     L   L ++  
Sbjct: 200 IGEAERLKNAGVKELLVISQDTSAY---GVDTKHSLGFANGSPVRHNIKALSEELGKMGI 256

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
            VRL Y   +P       + A G +   +PYL +P Q  S R+LK M R   A    + I
Sbjct: 257 WVRLHYVYPYPHVDEIIPLMAEGKV---LPYLDIPFQHASPRVLKMMKRPGQAERTLERI 313

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            + R + P++ I S FIVGFPGET++DF+  +D + +    +   FKYSP  G   + + 
Sbjct: 314 KKWREICPELVIRSTFIVGFPGETEEDFQILLDWLKEAQLDRVGCFKYSPVEGAAANEIE 373

Query: 380 EQVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPW 434
           +Q+ E+VK    ER + +Q+++   ++      +G  ++VLI++   E   G+    +P 
Sbjct: 374 DQIPEDVKQDRFERFMLVQQEISAAKLQKR---IGSTMQVLIDEVDDEGAIGRTYADAPE 430

Query: 435 LQSVV-LNSK-NHNIGDIIKVRITDVKISTLYGELV 468
           +  +V LN + N   G+++ V I       L+G ++
Sbjct: 431 IDGLVYLNGETNLKPGELVNVVIEHADEYDLWGSVL 466


>gi|258625718|ref|ZP_05720597.1| conserved hypothetical protein [Vibrio mimicus VM603]
 gi|262170444|ref|ZP_06038122.1| ribosomal protein S12p Asp88 methylthiotransferase [Vibrio mimicus
           MB-451]
 gi|258581956|gb|EEW06826.1| conserved hypothetical protein [Vibrio mimicus VM603]
 gi|261891520|gb|EEY37506.1| ribosomal protein S12p Asp88 methylthiotransferase [Vibrio mimicus
           MB-451]
          Length = 470

 Score =  179 bits (453), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 132/456 (28%), Positives = 224/456 (49%), Gaps = 46/456 (10%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ DS R+     ++GYE VNS  D+D++++NTC   + A ++    +G     
Sbjct: 39  SLGCPKNLVDSERILTQLRTEGYEIVNSYHDSDVVIVNTCGFIDSAVQESLDTIGEA--- 95

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               +KE G   V+V GC+   E +EI +  P V  + GP  Y  + E + +        
Sbjct: 96  ----LKENGK--VIVTGCLGARE-DEIRQVHPNVLGITGPHAYQNVLEHVHQY------- 141

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
                  + F  L + D G        A+L I EGC+  CTFC++P  RG  +SR + ++
Sbjct: 142 -APKPAHNPFTSL-VPDHGVKLTPKHYAYLKISEGCNHRCTFCIIPSMRGDLVSRPVGEI 199

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE-----------KCTFSDLLYSLSEIKG 259
           + EA +L + GV E+ ++ Q+ +A+   G+D +           +     L   L ++  
Sbjct: 200 IGEAERLKNAGVKELLVISQDTSAY---GVDTKHSLGFANGSPVRHNIKALSEELGKMGI 256

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
            VRL Y   +P       + A G +   +PYL +P Q  S R+LK M R   A    + I
Sbjct: 257 WVRLHYVYPYPHVDEIIPLMAEGKV---LPYLDIPFQHASPRVLKMMKRPGQAERTLERI 313

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            + R + P++ I S FIVGFPGET++DF+  +D + +    +   FKYSP  G   + + 
Sbjct: 314 KKWREICPELVIRSTFIVGFPGETEEDFQILLDWLKEAQLDRVGCFKYSPVEGAAANEIE 373

Query: 380 EQVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPW 434
           +Q+ E VK    ER + +Q+++   ++      +G  ++VLI++  +E   G+    +P 
Sbjct: 374 DQIPEEVKQDRFERFMLVQQEISAAKLQKR---IGSTMQVLIDEVDEEGAIGRTYADAPE 430

Query: 435 LQSVV-LNSK-NHNIGDIIKVRITDVKISTLYGELV 468
           +  +V LN + N   G+++ V I       L+G ++
Sbjct: 431 IDGLVYLNGETNLKPGELVNVVIEHADEYDLWGSVL 466


>gi|150401611|ref|YP_001325377.1| MiaB-like tRNA modifying enzyme [Methanococcus aeolicus Nankai-3]
 gi|150014314|gb|ABR56765.1| MiaB-like tRNA modifying enzyme [Methanococcus aeolicus Nankai-3]
          Length = 449

 Score =  179 bits (453), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 127/467 (27%), Positives = 240/467 (51%), Gaps = 49/467 (10%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + F++ YGC +N  D+  + +     + +  VN++DDAD++V+NTC +R +   K+ S +
Sbjct: 7   KIFIEGYGCTLNTADTNIINNSIKKFKNFIIVNNLDDADIVVINTCVVRLETEHKMISRI 66

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             I++L         +  +V+AGC+ +A  ++  + +P  ++++ P+  + + +++    
Sbjct: 67  NYIKSL---------NKYIVIAGCMPKALKKKAEKINP--DILIMPKEAHLIGDII--YN 113

Query: 145 FGKRVVDTDYSVEDKFE----------RLSIVDGGYN---------RKRGVTAFLTIQEG 185
           + K  +  + + ++K E            +   G YN         +   +   L I EG
Sbjct: 114 YFKNNIGNENNADNKIEDSMKCGELPHNQASSSGNYNDIDNKLTQLKPNNLIMPLPISEG 173

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C   CT+C+V   RG   S +  +++++A++ +DNGV ++ +  Q+   +   G D +  
Sbjct: 174 CTGKCTYCIVKIARGRLASYNPDKIINKAKEFVDNGVKQMLITSQDTACY---GFD-KNT 229

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMS---DCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
           T   LL  + +IKG   +R    H +++    D LI  + D D +  + HLP+QSG D +
Sbjct: 230 TLPTLLNEICQIKGDFNIRIGMMHAKNVPMIIDELIDRYKD-DKITKFFHLPIQSGDDDV 288

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           L++M R +T  EY  I    +    D+  ++D IVGFP ET+D+F  T++L+ K+     
Sbjct: 289 LRAMKREYTVDEYMDIAMEFKRKIKDLNFNTDVIVGFPTETEDNFNNTIELLKKLKPDAI 348

Query: 363 FSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422
              KY+ R GT  ++ L+QVD  ++ ER+  L K  +E  +  ++  VG+I+  LI    
Sbjct: 349 HGAKYTQRKGTE-ADRLKQVDTKIRKERMKILDKLRKEFSLENHEKYVGKIMPCLIV--- 404

Query: 423 KEKGKLVGRSPWLQSVVL-NSKNHNIGDIIKVRITDVKISTLYGELV 468
              GK  G +   ++V   N ++  IG+  K++I +     LYGE++
Sbjct: 405 ---GKNEGITHNCKTVKFENCEDVKIGEFRKIKIKEALTFGLYGEII 448


>gi|197103594|ref|YP_002128971.1| 2-methylthioadenine synthetase [Phenylobacterium zucineum HLK1]
 gi|196477014|gb|ACG76542.1| 2-methylthioadenine synthetase [Phenylobacterium zucineum HLK1]
          Length = 465

 Score =  179 bits (453), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 116/357 (32%), Positives = 179/357 (50%), Gaps = 22/357 (6%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           ++GC++N Y+S  +       G         +D IV NTC +  +A  +    + + R  
Sbjct: 53  TFGCRLNAYESEVIRKRAAEDGL--------SDAIVFNTCAVTGEAVRQARQAIRKAR-- 102

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
                +E     V+V GC AQ + +        V++V+G     +       A  G+  V
Sbjct: 103 -----RERPGAKVIVTGCAAQIDPDAFAAMDE-VDLVLGNAEKSQAGSYAPTAEAGRVRV 156

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
           +   SV +    L  +DG  +R R   A++ +Q GCD  CTFC++PY RG   S    +V
Sbjct: 157 NDIMSVRETAGHL--IDGLKDRAR---AYVEVQNGCDHRCTFCIIPYGRGNSRSAPAGEV 211

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270
           V++ R+L   G  E+ L G +V +W G  L G       +   L    GL RLR ++   
Sbjct: 212 VEQVRRLAGEGYQEVVLTGVDVTSW-GADLPGAPTLGQLVGRILKLAPGLPRLRLSSIDA 270

Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330
            ++   L++   +   LMPYLHL +Q+G D ILK M RRH+  +  +++  +R+VRPD+A
Sbjct: 271 AEIDADLLRLLAEEPRLMPYLHLSLQAGDDMILKRMKRRHSRADALRLVADVRAVRPDVA 330

Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
             +D I GFP ETD+ F  T+ LV++ G A    F +SPR GTP + M +   E VK
Sbjct: 331 FGADLIAGFPTETDEMFENTLRLVEEAGLAFLHVFPFSPRPGTPAARMPQLPREVVK 387


>gi|284048363|ref|YP_003398702.1| MiaB-like tRNA modifying enzyme YliG [Acidaminococcus fermentans
           DSM 20731]
 gi|283952584|gb|ADB47387.1| MiaB-like tRNA modifying enzyme YliG [Acidaminococcus fermentans
           DSM 20731]
          Length = 442

 Score =  179 bits (453), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 137/458 (29%), Positives = 225/458 (49%), Gaps = 40/458 (8%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V S GC  N+ DS  M  +   + +   N    AD+I++NTC   E A  +  + + ++ 
Sbjct: 5   VVSLGCPKNLVDSEVMMGLIRERQWTITNDPTHADVIIVNTCGFIESAKTESINTILQMA 64

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
             K    K+     ++V GC+ Q   +E+    P V+ ++G + Y ++  +++R   G+R
Sbjct: 65  EYK----KDDPHRKLIVTGCLGQRYADELFADLPEVDAIIGTECYDQIGTVIDRVEKGER 120

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGV------TAFLTIQEGCDKFCTFCVVPYTRGIE 202
                      F  L        + R V      TA+L I EGC+  C++C +P  RG  
Sbjct: 121 -----------FTLLKPPQKYTQKARRVLTTPQYTAYLKIAEGCNNRCSYCAIPKIRGPY 169

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLV 261
            SR   +V+ EAR L+  GV E+ L+ Q+   +   G+D   K   +DLL  L+ I  L 
Sbjct: 170 RSRPYEEVLQEARDLVSQGVRELILVAQDTTQY---GIDLYHKLRLADLLRDLNTIPDLK 226

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
            +R    +P   +D LI+     D +  Y+ LP+Q  S+ +L +M+RR T  +  +++ +
Sbjct: 227 WIRILYCYPDSFTDELIETMAQCDKVCHYVDLPLQHASNSLLHTMHRRDTREQVEELLAK 286

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R   PDI + + FIVGFPGETD  F+  +D V K  +  A  F YS   GT    M  Q
Sbjct: 287 LRKRMPDICLRTTFIVGFPGETDGQFQELLDFVRKERFQCAGVFPYSQEDGTEAGAMPNQ 346

Query: 382 VDENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL-VGRSPWLQS 437
           + + VK +R   L+ LQ ++ E+         G+++EVLIE   +E   L +GRS + ++
Sbjct: 347 IPDEVKQDRYHALMSLQAEISEE---IQQEREGKVLEVLIEGKDEEDPNLALGRS-YAEA 402

Query: 438 VVLNSK-------NHNIGDIIKVRITDVKISTLYGELV 468
             ++ K       +   GD +KVRI+        G++V
Sbjct: 403 PDIDGKIYVEEAADLKAGDFVKVRISQGFTYEAVGQIV 440


>gi|156741270|ref|YP_001431399.1| MiaB-like tRNA modifying protein YliG [Roseiflexus castenholzii DSM
           13941]
 gi|238066619|sp|A7NIS8|RIMO_ROSCS RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|156232598|gb|ABU57381.1| MiaB-like tRNA modifying enzyme YliG [Roseiflexus castenholzii DSM
           13941]
          Length = 482

 Score =  179 bits (453), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 134/476 (28%), Positives = 231/476 (48%), Gaps = 46/476 (9%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +  + + GC  N  DS  M  +  +QG+    S DDAD++++NTC     A E+  + L 
Sbjct: 3   KVHIITLGCPKNQVDSEGMSGILAAQGHTLAASADDADVVIVNTCSFIAAAREETLAVLR 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE---- 141
            +   K    +      +V AGC+A++    I+  +P V+  +G + + R+ E++E    
Sbjct: 63  DVAACKTPEQR------LVAAGCMAESH-RAIVAATPGVDATLGTREWTRIAEVVETFQP 115

Query: 142 -------RARFGKRVVD-TDYSVEDKFERLSIVDGGY---------NRKRGVTAFLTIQE 184
                   A   + ++  T   V         V G Y          R  G +A+L I +
Sbjct: 116 AATMAPLNAASAREIIPLTSAGVPSPAPHDLSVPGAYADWRTAPIRRRAVGPSAYLKISD 175

Query: 185 GCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-RGKGL-DG 242
           GC+  C FC +P  +G   S+++  ++ EA++L   GV EI L+ Q++  + R  GL DG
Sbjct: 176 GCNLRCAFCTIPSFKGDMRSKAIGAILGEAQELAAAGVKEIVLVAQHLTDYGRDLGLKDG 235

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
                 ++   L E    VRL Y  ++P  + + LI        +  YL +P+Q      
Sbjct: 236 LAILLDEICAVLPE-NVWVRLMY--AYPHGIGERLIATMARHPQICHYLDMPLQHAHPET 292

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           L+ M R       R++ID +R+  PDIAI S FIVGFPGET+ +FRA +  ++ + + + 
Sbjct: 293 LRRMRRPPDTDRTRRLIDDLRAAIPDIAIRSTFIVGFPGETNTEFRALLAFLEDVQFDRV 352

Query: 363 FSFKYSPRLGTPGSNMLEQVDENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIE 419
             F+YS   GTP + + +Q+   +   R   ++ LQ+++  ++   N   +G+++ VL+E
Sbjct: 353 GVFRYSREPGTPAAALPDQLAPRIIERRWHEIMRLQQRISRER---NRRWLGRVVRVLVE 409

Query: 420 KHGK-EKGKL--VGRS----PWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
             G+ + G++  VGRS    P +   VL       G  + VR+T      L+G++V
Sbjct: 410 GQGQTDDGRMLSVGRSFRDAPEVDGQVLFWGAATPGTFVDVRVTQALDYDLWGDVV 465


>gi|146291706|ref|YP_001182130.1| ribosomal protein S12 methylthiotransferase [Shewanella
           putrefaciens CN-32]
 gi|238066624|sp|A4Y2Z8|RIMO_SHEPC RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|145563396|gb|ABP74331.1| MiaB-like tRNA modifying enzyme YliG [Shewanella putrefaciens
           CN-32]
          Length = 472

 Score =  179 bits (453), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 139/454 (30%), Positives = 223/454 (49%), Gaps = 42/454 (9%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ DS R+       GYE  NS D+ADL+++NTC   + A E+    L  +R  
Sbjct: 39  SLGCPKNLVDSERILTQLRIDGYEVTNSYDNADLVIVNTCGFIDAAVEES---LDAVREA 95

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               ++E G   V+V GC+   E  +I    P V  + GP +Y  +          K V 
Sbjct: 96  ----LEENGK--VIVTGCLGAKEN-QIREVYPDVLEITGPHSYEAV-----LKHVHKYVP 143

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
             ++   + F  L I   G        A+L I EGCD  CTFC++P  RG   SR    +
Sbjct: 144 KPEH---NPFTSL-IPQTGVKLTPKHYAYLKISEGCDNRCTFCIIPSLRGDLNSRPAGSI 199

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE---------KCTFSDLLYSLSEIKGLV 261
           +DEA++L+++GV EI ++ Q+ +A+ GK   G          K   + L   L ++   V
Sbjct: 200 LDEAKRLVESGVQEILVVSQDTSAY-GKDKSGRTDFWDGMPVKQDITSLARQLGKMGAWV 258

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           RL Y   +P       + A G   +++PYL +P+Q  S RILK M R        + I R
Sbjct: 259 RLHYIYPYPWVDDLIPLMAEG---LILPYLDIPMQHASPRILKMMKRPGRVDRQLEAIQR 315

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
            R + PD+ I S FIVGFPGET++DF+  +D + +    +   FKYS   G   + + E 
Sbjct: 316 WREICPDLVIRSTFIVGFPGETEEDFQILLDFLKEARLDRVGCFKYSEVDGAVANTIAEL 375

Query: 382 VDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPWLQ 436
           + E+VK +   R + LQ ++  ++++     VG+ +++LI+   +E   G+    +P + 
Sbjct: 376 ISEDVKEDRYHRFMELQAEISAERLA---RFVGRTLDILIDDVDEEGAIGRSFADAPEID 432

Query: 437 SVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468
            +V  +    +  G +++ RIT      L+ E+V
Sbjct: 433 GMVFINGETELEPGMLVRARITHSDEHDLWAEVV 466


>gi|254173086|ref|ZP_04879760.1| MiaB-like tRNA modifying enzyme, archaeal-type [Thermococcus sp.
           AM4]
 gi|214033242|gb|EEB74070.1| MiaB-like tRNA modifying enzyme, archaeal-type [Thermococcus sp.
           AM4]
          Length = 424

 Score =  179 bits (453), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 133/443 (30%), Positives = 223/443 (50%), Gaps = 27/443 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R  V+SYGC  N  D   ME +    G+E V + ++AD +V+NTC +++      +    
Sbjct: 3   RVHVESYGCSRNKADGEIMEALLLKAGHELVETPENADYVVVNTCAVKDPTE---FKMAK 59

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           RIR L +S  K      V+  GC+     + I    P V+ ++G ++  R+ E +E A  
Sbjct: 60  RIRELLDSGKK------VIATGCLVHVNPDAI---DPRVSGILGVKSIDRIAEAIEIAER 110

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G ++V  +   E   ++L +       K GV   + I EGC   CT+C   + RG+  S 
Sbjct: 111 GGKLVSVEGWRERNPDKLELPRLW---KPGVAFVVPISEGCLNACTYCATRFARGVLKSY 167

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
               VV   ++ +  G  EI L  ++   +   G D      ++LL  ++ I+G  R+R 
Sbjct: 168 KPELVVKWVKEALARGYREIILSSEDTGCY---GFD-IGTNLAELLDEITAIEGEFRVRV 223

Query: 266 TTSHPRDMS---DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
              +P  +    D LI+A+ D  V   +LHLPVQSG + IL+ M R +T  E+++I+   
Sbjct: 224 GMMNPNHVLKFLDELIEAYQDEKVYR-FLHLPVQSGDNEILRRMGRNYTVEEFKEIVRAF 282

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R   P++ +++D IVGFPGET++ FR T++LV +I   +    +YS R GT  +   +Q+
Sbjct: 283 RKKIPELNLNTDIIVGFPGETEEAFRNTVELVKRIKPDKINVSRYSARPGTIAARW-KQL 341

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
              +  ER   L +   +     N A VG+ +EVL+   GK KG + GR+   + ++L+S
Sbjct: 342 PGWLVKERSRELHRLRLQIAYEINKAYVGRTVEVLVHGPGK-KGGVEGRAFNYKDIILDS 400

Query: 443 KNHNIGDIIKVRITDVKISTLYG 465
                G +++ ++     + L G
Sbjct: 401 --GEAGSLVRAKVERATATYLIG 421


>gi|325981563|ref|YP_004293965.1| MiaB-like tRNA modifying enzyme YliG [Nitrosomonas sp. AL212]
 gi|325531082|gb|ADZ25803.1| MiaB-like tRNA modifying enzyme YliG [Nitrosomonas sp. AL212]
          Length = 459

 Score =  179 bits (453), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 131/465 (28%), Positives = 227/465 (48%), Gaps = 51/465 (10%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           Q+    S GC   + DS ++     ++GYE   S  DADL+V+NTC   + A E+    +
Sbjct: 9   QKVGFVSLGCPKALVDSEQILTQLRAEGYEISASYQDADLVVVNTCGFIDSAVEESLDAI 68

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCV-AQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           G         + E G   V+V GC+ A+ +G+ + +  P V  V GP   + LPE++   
Sbjct: 69  GEA-------LAENGK--VIVTGCLGAKEDGDVVKKAHPHVLAVTGP---HALPEVMSAI 116

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
                     Y+     + + +    Y       A++ I EGC+  CTFC++P  RG  +
Sbjct: 117 HTHLPQPHDPYTSLIPPQGIRLTPKHY-------AYVKISEGCNHRCTFCIIPSMRGGLV 169

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLY 252
           SR + QV+ EA  L++ GV E+ ++ Q+ +A           W+G+ +   K   ++L +
Sbjct: 170 SRPIHQVMQEAEHLVNAGVKELLIISQDTSAYGVDVKYRTGFWQGRPV---KTRLTELAH 226

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
           +L  +   VRL Y   +P   +   + A G +   +PYL +P Q  + RILK M R  +A
Sbjct: 227 ALGSLGVWVRLHYVYPYPHVDAIIPLMAEGKI---LPYLDVPFQHANPRILKMMKRPASA 283

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
                 I + R++ PDI + S FIVGFPGET+ +F   +  + +    +   F YSP  G
Sbjct: 284 ENNLARIQQWRNICPDITLRSTFIVGFPGETEAEFEDLLAFLQEAQLDRVGCFTYSPVAG 343

Query: 373 TPGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV 429
              + + + + E +K E   R +  Q+++  Q+++   A VG  + V+I++      +++
Sbjct: 344 ATANQLSDHIPEAIKQERRARFMQQQEEISRQRLA---AKVGHTMTVMIDE--LTGSQVI 398

Query: 430 GRS----PWLQSVVL--NSKNHNIGDIIKVRITDVKISTLYGELV 468
            RS    P +  VV   N+++   G++I V+IT      L+  ++
Sbjct: 399 ARSSADAPDIDGVVYVENAEHLQPGELIDVQITGSNAHDLFAVML 443


>gi|166712649|ref|ZP_02243856.1| hypothetical protein Xoryp_14640 [Xanthomonas oryzae pv. oryzicola
           BLS256]
          Length = 454

 Score =  179 bits (453), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 140/460 (30%), Positives = 215/460 (46%), Gaps = 44/460 (9%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  FV S GC   + DS R+      +GY+ V S D AD++V+NTC   + A  +    
Sbjct: 6   PKVGFV-SLGCPKALVDSERILTQLRVEGYDIVPSYDAADVVVVNTCGFIDSAVTESLDA 64

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G   +             V+V GC+ +   E+I    P V  V GPQ Y  + E +  A
Sbjct: 65  IGEAMSANGK---------VIVTGCLGK-RPEQIREAYPQVLAVSGPQDYQSVMEAVHAA 114

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
              +          D F  L + D G        A+L I EGC+  C+FC++P  RG  +
Sbjct: 115 LPPRH---------DPFVDL-VPDYGIKLTPRHYAYLKISEGCNHRCSFCIIPSMRGDLV 164

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS---------L 254
           SR + +V+ EA +L+  GV E+ ++ Q+ +A+ G  L   +  + D +Y          L
Sbjct: 165 SRPVDEVLREAERLVRGGVKELLVVSQDTSAY-GVDLKYAERPWRDRMYQTRMKALCEGL 223

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
           SE+    RL Y   +P       + A G L   +PYL +P Q  S RILK M R     +
Sbjct: 224 SELGVWTRLHYVYPYPHVDDVLPLMAEGKL---LPYLDIPFQHASPRILKLMKRPGAVEK 280

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
             Q + R +++ P+I + S FIVGFPGETD +F + +D +D+    +  +F YSP  G  
Sbjct: 281 TLQRVQRWKAMCPEITVRSTFIVGFPGETDAEFESLLDFLDQAQLDRVGAFAYSPVDGAS 340

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS-- 432
            + + + V E VK ERL     K  E      +A +G + + L++    E    V RS  
Sbjct: 341 ANALPDPVPEEVKQERLARFMAKQAEISALRLEAKIGSVHQCLVDL--IEDDIAVARSRA 398

Query: 433 --PWLQSVVLNSKNH----NIGDIIKVRITDVKISTLYGE 466
             P +  +V           +GD++ V ITD     L+G+
Sbjct: 399 DAPEIDGLVHIQNGGELGLKVGDLVDVEITDSDEHDLFGD 438


>gi|120600362|ref|YP_964936.1| ribosomal protein S12 methylthiotransferase [Shewanella sp.
           W3-18-1]
 gi|238066618|sp|A1RNY7|RIMO_SHESW RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|120560455|gb|ABM26382.1| MiaB-like tRNA modifying enzyme YliG [Shewanella sp. W3-18-1]
          Length = 472

 Score =  179 bits (453), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 140/453 (30%), Positives = 224/453 (49%), Gaps = 40/453 (8%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ DS R+       GYE  NS D+ADL+++NTC   + A E+    L  +R  
Sbjct: 39  SLGCPKNLVDSERILTQLRIDGYEVTNSYDNADLVIVNTCGFIDAAVEES---LDAVREA 95

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               ++E G   V+V GC+   E  +I    P V  + GP +Y  +          K V 
Sbjct: 96  ----LEENGK--VIVTGCLGAKEN-QIREVHPDVLEITGPHSYEAV-----LKHVHKYVP 143

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
             ++   + F  L I   G        A+L I EGCD  CTFC++P  RG   SR    +
Sbjct: 144 KPEH---NPFTSL-IPQTGVKLTPKHYAYLKISEGCDNRCTFCIIPSLRGDLDSRPAGSI 199

Query: 211 VDEARKLIDNGVCEITLLGQNVNAW-RGKG-----LDGE--KCTFSDLLYSLSEIKGLVR 262
           +DEA++L+++GV EI ++ Q+ +A+ + KG      DG   K   + L   L ++   VR
Sbjct: 200 LDEAKRLVESGVQEILVVSQDTSAYGKDKGGRTDFWDGMPVKQDITSLARQLGKMGAWVR 259

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           L Y   +P       + A G   +++PYL +P+Q  S RILK M R        + I R 
Sbjct: 260 LHYIYPYPWVDDLIPLMAEG---LILPYLDIPMQHASPRILKMMKRPGRVDRQLEAIQRW 316

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R + PD+ I S FIVGFPGET++DF+  +D + +    +   FKYS   G   + + E +
Sbjct: 317 REICPDLVIRSTFIVGFPGETEEDFQILLDFLKEARLDRVGCFKYSEVDGAVANTIAELI 376

Query: 383 DENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPWLQS 437
            E VK +   R + LQ ++  ++++     VG+ +++LI+   +E   G+    +P +  
Sbjct: 377 SEEVKEDRYHRFMELQAEISAERLA---RFVGRTLDILIDDVDEEGAIGRSFADAPEIDG 433

Query: 438 VVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468
           +V  +    +  G +++ RIT      L+ E+V
Sbjct: 434 MVFINGETELEPGMLVRARITHSDEHDLWAEVV 466


>gi|227538337|ref|ZP_03968386.1| 2-methylthioadenine synthetase [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227241852|gb|EEI91867.1| 2-methylthioadenine synthetase [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 447

 Score =  179 bits (453), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 123/440 (27%), Positives = 226/440 (51%), Gaps = 16/440 (3%)

Query: 20  QCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEK 79
           + I+ ++    + GC++N  ++  +  +F   GYE       AD+ V+NTC + + A +K
Sbjct: 5   KIIMNKKVAFYTLGCKLNFSETSSIGRIFKDAGYETTAFNSQADVYVINTCSVTDHADKK 64

Query: 80  VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL 139
                   R +    +K   +  + + GC AQ + +EI    P V++V+G    + + E 
Sbjct: 65  C-------RKVVKEALKYSPNAYITIVGCYAQLKPQEIAN-IPGVDMVLGAAEKFNIIEH 116

Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           +      ++ +  +  +++  + +S    G +R R    FL +Q+GCD  CTFC +P  R
Sbjct: 117 INDLTKQEKTIVHNAPIDETNQFVSAYSIG-DRTR---TFLKVQDGCDYSCTFCTIPLAR 172

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT-FSDLLYSLSEIK 258
           G   S  +  +V +A ++  +GV EI L G N+  +  +  DGE+   F DL+ +L E++
Sbjct: 173 GASRSGKIEDIVRQAEEIAASGVKEIVLTGVNIGDFGVR--DGERQDRFLDLVKALDEVE 230

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           G+ R+R ++  P  +++ +I+        +P+ H+P+QSG+++IL  M RR+    Y + 
Sbjct: 231 GIDRIRISSIEPNLLANDIIEFVAQSKRFVPHFHMPLQSGNNKILGMMRRRYKRELYAER 290

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           +++I+S+ PD  I  D IVGFPGET +DF  T + ++++  +    F YS R  T  + M
Sbjct: 291 VEKIKSLMPDCCIGVDVIVGFPGETREDFLDTYNFLNEMDISYLHVFTYSERENTIAAQM 350

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSV 438
              V    +++R   L     +++ +F +  + +I +VL E   KE G + G S     V
Sbjct: 351 EGAVPGAQRSDRSKMLHILSEKKRRAFYENQLSKIGDVLFESDEKE-GFMHGFSKNYVKV 409

Query: 439 VLNSKNHNIGDIIKVRITDV 458
                   + ++I+VR T V
Sbjct: 410 RTAYDPLLVNEVIQVRFTSV 429


>gi|319424938|gb|ADV53012.1| MiaB-like tRNA modifying enzyme YliG [Shewanella putrefaciens 200]
          Length = 472

 Score =  179 bits (453), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 140/453 (30%), Positives = 224/453 (49%), Gaps = 40/453 (8%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ DS R+       GYE  NS D+ADL+++NTC   + A E+    L  +R  
Sbjct: 39  SLGCPKNLVDSERILTQLRIDGYEVTNSYDNADLVIVNTCGFIDAAVEES---LDAVREA 95

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               ++E G   V+V GC+   E  +I    P V  + GP +Y  +          K V 
Sbjct: 96  ----LEENGK--VIVTGCLGAKEN-QIREVHPDVLEITGPHSYEAV-----LKHVHKYVP 143

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
             ++   + F  L I   G        A+L I EGCD  CTFC++P  RG   SR    +
Sbjct: 144 KPEH---NPFTSL-IPQTGVKLTPKHYAYLKISEGCDNRCTFCIIPSLRGDLDSRPAGSI 199

Query: 211 VDEARKLIDNGVCEITLLGQNVNAW-RGKG-----LDGE--KCTFSDLLYSLSEIKGLVR 262
           +DEA++L+++GV EI ++ Q+ +A+ + KG      DG   K   + L   L ++   VR
Sbjct: 200 LDEAKRLVESGVQEILVVSQDTSAYGKDKGGRTDFWDGMPVKQDITSLARQLGKMGAWVR 259

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           L Y   +P       + A G   +++PYL +P+Q  S RILK M R        + I R 
Sbjct: 260 LHYIYPYPWVDDLIPLMAEG---LILPYLDIPMQHASPRILKMMKRPGRVDRQLEAIQRW 316

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R + PD+ I S FIVGFPGET++DF+  +D + +    +   FKYS   G   + + E +
Sbjct: 317 REICPDLVIRSTFIVGFPGETEEDFQILLDFLKEARLDRVGCFKYSEVDGAVANTIAELI 376

Query: 383 DENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPWLQS 437
            E VK +   R + LQ ++  ++++     VG+ +++LI+   +E   G+    +P +  
Sbjct: 377 SEEVKEDRYHRFMELQAEISAERLA---RFVGRTLDILIDDVDEEGAIGRSFADAPEIDG 433

Query: 438 VVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468
           +V  +    +  G +++ RIT      L+ E+V
Sbjct: 434 MVFINGETELEPGMLVRARITHSDEHDLWAEVV 466


>gi|46199117|ref|YP_004784.1| Fe-S oxidoreductase [Thermus thermophilus HB27]
 gi|81405881|sp|Q72JG1|RIMO_THET2 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|46196741|gb|AAS81157.1| Fe-S oxidoreductase [Thermus thermophilus HB27]
          Length = 434

 Score =  179 bits (453), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 140/453 (30%), Positives = 224/453 (49%), Gaps = 47/453 (10%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC   + DS ++     + GYE   S ++A+L+++NTC    +A E+    +G     
Sbjct: 8   SLGCPKALVDSEQILSRLKALGYETSPSYEEAELVIVNTCGFINEAVEESLEAIGEA--- 64

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               +KE G   VVV GC+  A  E+I  R P V  V GP    R+ E ++      R  
Sbjct: 65  ----LKENGK--VVVTGCLG-ARPEKIRERHPQVLAVTGPGEVERVLEAVQEVLPAPR-- 115

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
                  D F  L ++           A++ + EGCD  C+FC++P  RG   SR  + V
Sbjct: 116 -------DPF--LDLIPPQVKLTPRHYAYVKLSEGCDHRCSFCIIPKLRGRLRSRDAADV 166

Query: 211 VDEARKLIDNGVCEITLLGQNVNAW-----RGKGLDGEK---CTFSDLLYSLSEIKGLVR 262
           + EA +L+  G  E+ L+ Q+++A+       + L G++       DLL  ++E+   +R
Sbjct: 167 LAEAARLVATGTKELLLVAQDLSAYGVDLGHRESLWGDRPVRAELKDLLTHMAELGVWIR 226

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE-YRQIIDR 321
           L Y   +P       + A G +   +PYL +P+Q  S RIL+ M RR   YE + + +  
Sbjct: 227 LHYVYPYPHVKDLLPLMAEGKV---LPYLDVPLQHASPRILRLM-RRPGGYESHLKTLKA 282

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
            R V P++A+ S FIVGFPGET++DF+  +D +++    +   F YSP  G   + + + 
Sbjct: 283 WREVVPELALRSTFIVGFPGETEEDFQILLDFLEEAELDRVGVFAYSPVEGAEANRLPDP 342

Query: 382 VDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PW 434
           V E VK E   RLL +Q ++  ++   N   VG+ +EVL+++   E G  VGR+    P 
Sbjct: 343 VPEEVKEERKARLLEVQARVSLRK---NQRFVGKTLEVLVDEL-PEPGLAVGRTYRDAPG 398

Query: 435 LQSVVLNSKNHN--IGDIIKVRITDVKISTLYG 465
           +  VV    +    +G+ I VRI       L+G
Sbjct: 399 VDGVVYVETDGTVRVGERIPVRILRADTYDLHG 431


>gi|218283870|ref|ZP_03489756.1| hypothetical protein EUBIFOR_02352 [Eubacterium biforme DSM 3989]
 gi|218215533|gb|EEC89071.1| hypothetical protein EUBIFOR_02352 [Eubacterium biforme DSM 3989]
          Length = 432

 Score =  179 bits (453), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 128/447 (28%), Positives = 235/447 (52%), Gaps = 32/447 (7%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ DS ++  M    G+E V +  DA  I++NTC   E A E+  + + ++   
Sbjct: 7   SLGCCKNLVDSEQIMGMIKRGGHEIVANPKDAQAIIVNTCGFIESAKEESINTIFKMAQY 66

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
           K   +++     ++V GC+AQ   + +    P ++ V+  + Y  L   L++      ++
Sbjct: 67  KERNLEK-----LIVCGCLAQRYTDTLREEIPEIDAVIPIREYDTLASQLQK------IL 115

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
            +D ++ DK ER  ++ G         A++ I +GC   C +C +P  RG + SR++  +
Sbjct: 116 GSD-TLLDKAER--VISGN-----PWQAYVKISDGCSNRCAYCAIPLIRGDQKSRTIEDI 167

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLD--GEKCTFSDLLYSLSEIKGLVRLRYTTS 268
           ++E   L   GV E+TL+ Q+   +   GLD  GE     +LL  +S+++ L  +R    
Sbjct: 168 MEEVNHLSSIGVKELTLIAQDTTKY---GLDNYGE-LMLPELLRQVSKVEELHWIRVLYM 223

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
           +P ++ D +++A  + + ++PY  +P+Q  ++R+LK MNRR    +  +++D+I ++ P+
Sbjct: 224 YPDEIVDDVLQAMSESEKIVPYFDIPMQHANNRLLKLMNRRGPKEDVLKVVDKIHTMFPN 283

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
             + +  IVGFP ET+++F   +D + +I + +  +F YS    TP  +M  Q+DE V+ 
Sbjct: 284 ATLRTTMIVGFPTETEEEFEELVDFIKEIKWDRMGAFTYSKEEDTPAYDMDGQIDEEVQN 343

Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHG---KEKGKLVGRSPWL---QSVVLN 441
           +RL  L     E     N   +G++IEVL+ EK G   + +G+    +P     Q +  +
Sbjct: 344 DRLARLMAVQEEISKEKNQEKIGKVIEVLVEEKEGLVDRYRGRSAADAPDEVDGQVIFTS 403

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
            +   +G  +KV+ITD K   +YG  V
Sbjct: 404 EEPLELGTFVKVKITDAKSYDVYGTCV 430


>gi|325103664|ref|YP_004273318.1| MiaB-like tRNA modifying enzyme [Pedobacter saltans DSM 12145]
 gi|324972512|gb|ADY51496.1| MiaB-like tRNA modifying enzyme [Pedobacter saltans DSM 12145]
          Length = 439

 Score =  178 bits (452), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 121/399 (30%), Positives = 206/399 (51%), Gaps = 23/399 (5%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N  ++  +   F + G++ V   D AD+ V+NTC + E A +K        R +
Sbjct: 9   TLGCKLNYSETSTIGRQFQNAGFKMVEFTDKADVYVINTCSVTENADKKC-------RKV 61

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPI--VNVVVGPQTYYRLPELLERARFGKR 148
               +K   +  + + GC AQ +  EI   S I  V+VV+G    ++L E ++      +
Sbjct: 62  VKEALKHSPNAYIAIVGCYAQLKPTEI---SEIEGVDVVLGAAEKFQLLEHIQDLTKKPK 118

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
               +  +++  E ++    G +R R    FL +Q+GCD  CTFC +P  RG   S ++ 
Sbjct: 119 AEIFNKPIKETNEFVASYSFG-DRTR---TFLKVQDGCDYSCTFCTIPLARGESRSDTID 174

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAW---RGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            +V +A+++  +GV EI L G N+  +    GK  D     F DL+ +L E++G+ R+R 
Sbjct: 175 SIVAQAKEIAKSGVKEIVLTGVNIGDFGIRNGKRED----KFFDLVKALDEVEGIDRIRI 230

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
           ++  P  +S  +I+        +P+ H+P+QSGS++IL  M RR+    Y   +  I+ V
Sbjct: 231 SSIEPNLLSTEIIEFVSKSKRFVPHFHIPLQSGSNKILGLMRRRYRRELYVDRVREIKRV 290

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            PD  I  D IVGFPGET +DF  T + ++ +  +    F YS R  TP + M   V  +
Sbjct: 291 MPDCCIGVDVIVGFPGETREDFIDTYNFLNDLDISYLHVFTYSERENTPAAEMEGSVPGS 350

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE 424
            +A+R   L     +++ +F +  +G++ E+L E   KE
Sbjct: 351 QRADRSKMLHILSDKKRRAFYETQIGKVGEILFEGDLKE 389


>gi|320101289|ref|YP_004176881.1| MiaB family RNA modification protein [Desulfurococcus mucosus DSM
           2162]
 gi|319753641|gb|ADV65399.1| RNA modification enzyme, MiaB family [Desulfurococcus mucosus DSM
           2162]
          Length = 428

 Score =  178 bits (452), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 119/401 (29%), Positives = 212/401 (52%), Gaps = 26/401 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + ++++YGC +N  D   M +    +G+  VN   DAD I++NTC +R    +  Y  + 
Sbjct: 2   KVYIETYGCALNRSDEALMRESITGKGHVLVNDPGDADAIIINTCTVR---LDTEYHMVK 58

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           RIR L    ++ G  L  +VAGC+A+A+   + R +P  +++  PQ   R+ E+LE    
Sbjct: 59  RIRELYKLSMEAGKKL--IVAGCMARAQPYTVSRIAPGASLL-SPQNSPRVVEVLEAP-- 113

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G+ V+       D+        G Y   R   A + +QEGC   C+FC+  + R + +S 
Sbjct: 114 GRVVMINGVRARDRI-------GVYVENR--VAPIPVQEGCLSNCSFCISRHARRVLVSH 164

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT-FSDLLYSLSE-IKGLVRL 263
           S+  VV    K + +G  E+ L G ++  +   G+D  +     DL+  + E ++G   L
Sbjct: 165 SIDAVVKAVGKAVRDGAVEVQLTGMDLGTY---GMDLYRARRLPDLIRRIVENVRGNYML 221

Query: 264 RY---TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
           R       H R + + L+K   D + +  +LH+P+QSGS+R+LK M R +T  EY +++D
Sbjct: 222 RVGMINPEHLRHILEDLVKVVADAENVYKFLHIPLQSGSNRVLKLMRRNYTVEEYLEMVD 281

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           R++S  P+++I++D IVG P E+++DF  T+ ++++ G+ +     YS R  T  + M +
Sbjct: 282 RVKSSIPEVSIATDIIVGHPMESEEDFAETLRVIEEAGFERVHLAGYSMRPLTCSAAM-Q 340

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKH 421
           Q+  +V+ ER+L   + + +  +      VG  +   I +H
Sbjct: 341 QLPTSVRKERVLKALRVVEKVGMRVRARYVGTSVRCFITEH 381


>gi|237744247|ref|ZP_04574728.1| Fe-S oxidoreductase [Fusobacterium sp. 7_1]
 gi|229431476|gb|EEO41688.1| Fe-S oxidoreductase [Fusobacterium sp. 7_1]
          Length = 435

 Score =  178 bits (452), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 126/449 (28%), Positives = 230/449 (51%), Gaps = 40/449 (8%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  +++    +GYE V   D +D+ ++N+C +   A  K  + L R + +
Sbjct: 11  TLGCKVNQYETESIKNQLIKRGYEEVPFEDKSDIYIINSCTVTSIADRKTRNMLRRAKKI 70

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILR------------RSPIVNVVVGPQTYYRLPE 138
                    +  V+V GC AQ    EIL             +S IVN V   +       
Sbjct: 71  -------NPNAKVIVTGCYAQTNSREILEIEDVDFVIDNKNKSNIVNFVGAIEDIS---- 119

Query: 139 LLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
             ER + G    + +Y  E +F  L         +    A++ IQ+GC+ FC++C +P+ 
Sbjct: 120 -FEREKNGNIFQEKEYQ-EYEFATL---------REMTRAYVKIQDGCNHFCSYCKIPFA 168

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258
           RG   SR    ++ E  KL+++G  E+ L+G +++A+ G+  + EK +F  LL  + +I+
Sbjct: 169 RGKSRSRKKENILKEIEKLVEDGFKEVILIGIDLSAY-GEDFE-EKDSFESLLEDILKIR 226

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
            L R+R  + +P  ++D  I+   + + LMP+LH+ +QS  D +LK+M R + +   R+ 
Sbjct: 227 DLKRVRIGSVYPDKITDRFIELFKNKN-LMPHLHISLQSCDDTVLKNMRRNYGSLLIRES 285

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           + +++S   ++  ++D IVGFP E +  F+ T D++ +I ++    F+YS R GT  SNM
Sbjct: 286 LLKLKSKIKNMEFTADVIVGFPKEDETMFQNTYDVIREIKFSGLHIFQYSDREGTIASNM 345

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSP-WLQS 437
             +VD   K +R   L    +E  +      + + +EVL+E+   + G+  G S  +L+ 
Sbjct: 346 DGKVDSKTKKQRADRLDSLKQEMLIESRKKYLEKNLEVLVEEE--KDGEYFGYSQNYLRV 403

Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGE 466
              + +   I  +I ++I  V+ + L GE
Sbjct: 404 KFKSDEKELINKLINIKIKCVENNVLIGE 432


>gi|254784823|ref|YP_003072251.1| ribosomal protein S12 methylthiotransferase [Teredinibacter
           turnerae T7901]
 gi|237686747|gb|ACR14011.1| ribosomal protein S12 methylthiotransferase [Teredinibacter
           turnerae T7901]
          Length = 439

 Score =  178 bits (452), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 141/467 (30%), Positives = 226/467 (48%), Gaps = 57/467 (12%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           Q+    S GC   + DS R+       GY  V S DDADL+V+NTC   + A ++    +
Sbjct: 3   QKVGFISLGCPKALVDSERILTQLKLDGYSVVPSYDDADLVVVNTCGFIDSAKQESLDAI 62

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRS-PIVNVVVGPQTYYRLPELLERA 143
                  +  + E G   V+V GC+ + +  EI+R S P V  V GP  Y  +       
Sbjct: 63  -------SEAMSENGK--VIVTGCMGKGKDAEIIRESFPNVLSVTGPAAYEEV------- 106

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
             G  V +    V D    + +V   G        A+L I EGC+  C+FC++P  RG  
Sbjct: 107 -MGA-VHEYIPPVRDHNPHVDLVPPQGVKLTPRHYAYLKISEGCNHRCSFCIIPDMRGDL 164

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLL 251
           +SR +  V++EA +L++ G  E+ ++ Q+ +A           W+G+ +   K    +L 
Sbjct: 165 VSRPIGDVLNEAERLVNAGTRELLVISQDTSAYGVDLKYRTGFWQGRPV---KTRMQELC 221

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
            +L E+   VRL Y   +P   +   + A G    ++PYL +P Q  S  +LK+M R   
Sbjct: 222 EALGEMGVWVRLHYVYPYPHVDNVIPLMAEGK---ILPYLDIPFQHASPTVLKAMQR--P 276

Query: 312 AYEYRQIIDRIRSVR---PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
           A++  + +DRI + R   PD+ + S FIVGFPGETD DF   +D ++     +   F+YS
Sbjct: 277 AHQ-EKTLDRIHAWRKMCPDLTLRSTFIVGFPGETDADFELLLDWLEDAQLDRVGCFQYS 335

Query: 369 PRLGTPGSNMLEQVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK 425
           P  G   + +   V E VK    ER +  Q+++   ++    A +G+ I+VLI++   E 
Sbjct: 336 PVEGAAANALPNPVPEEVKQERWERFMAAQQRISAARLQ---AKIGKTIDVLIDR--SEG 390

Query: 426 GKLVGRS----PWLQSVVL--NSKNHNIGDIIKVRITDVKISTLYGE 466
              +GRS    P +  VV+  +S +   G +IK R+T      ++ E
Sbjct: 391 VNALGRSFADAPEIDGVVIVEDSAHLPAGSLIKARVTAADEYDIWAE 437


>gi|154249651|ref|YP_001410476.1| MiaB-like tRNA modifying enzyme [Fervidobacterium nodosum Rt17-B1]
 gi|154153587|gb|ABS60819.1| MiaB-like tRNA modifying enzyme [Fervidobacterium nodosum Rt17-B1]
          Length = 421

 Score =  178 bits (452), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 125/425 (29%), Positives = 216/425 (50%), Gaps = 23/425 (5%)

Query: 36  MNVYDSLRMEDMFFSQGYERVNSMD-DADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSR 94
           MN Y+S  M +M  +  Y  +   D +AD+ ++N+C +  +A  KV   +  IR      
Sbjct: 1   MNQYESELMIEMLENADYIVIPETDINADIYIINSCAVTGEAERKVRQTIRHIR------ 54

Query: 95  IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDY 154
            KE  D  +++ GC  Q   E     +  V++V+G      + + L       ++   DY
Sbjct: 55  -KENPDSKIILTGCYTQIPRESSEYETLGVDLVLGNSEKKSIVKFLNENGIYSKI---DY 110

Query: 155 SVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDE 213
             ED      + D    R R   AF+ +++GC+  CT+CV+   RG  I S+ +  V+ E
Sbjct: 111 WREDDISYEMVKDSIAERSR---AFIKVEDGCNNGCTYCVIRSLRGTRIRSKPIEVVIKE 167

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
           A +LI     E+ + G N+  + GK +       + LL  +S+I G  R+R ++ +P D+
Sbjct: 168 AEQLITKKHKELVITGLNLGKY-GKDIG---TNLAKLLNEVSKINGDFRIRLSSINPEDL 223

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
            D LI    + D +  +LH+P+QSGS  +LK M R +TA     +++++R+  P  +I++
Sbjct: 224 DDELINIILENDKICNHLHIPIQSGSTSVLKRMGRNYTADYLLGLVEKLRAADPLFSITT 283

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLC 393
           D +VGFPGE++ +F+ T+DLV K+ +++  +F++S R GT  + M  +V  NVK +R+  
Sbjct: 284 DIMVGFPGESEQEFQETIDLVSKLEFSKVHAFRFSERPGTRAAQMDRKVPGNVKKDRVEM 343

Query: 394 LQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKV 453
           L    +    ++    VG+   VL+E  G   G  +G   +   +   +    IGD +K 
Sbjct: 344 LISHSQNVANAYKRKLVGKTTTVLVE--GVMNGIYIGYDEYY--IPHETNGGIIGDFVKT 399

Query: 454 RITDV 458
            I  V
Sbjct: 400 VILSV 404


>gi|256027911|ref|ZP_05441745.1| Fe-S oxidoreductase [Fusobacterium sp. D11]
 gi|289765860|ref|ZP_06525238.1| fe-s oxidoreductase [Fusobacterium sp. D11]
 gi|289717415|gb|EFD81427.1| fe-s oxidoreductase [Fusobacterium sp. D11]
          Length = 435

 Score =  178 bits (452), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 127/449 (28%), Positives = 230/449 (51%), Gaps = 40/449 (8%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  +++    +GYE V   D +D+ ++N+C +   A  K  + L R + +
Sbjct: 11  TLGCKVNQYETESIKNQLIKRGYEEVPFEDKSDIYIINSCTVTSIADRKTRNMLRRAKKI 70

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILR------------RSPIVNVVVGPQTYYRLPE 138
                    +  V+V GC AQ    EIL             +S IVN V   +       
Sbjct: 71  -------NPNAKVIVTGCYAQTNSREILEIEDVDFVIDNKNKSNIVNFVGAIEDIS---- 119

Query: 139 LLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
             ER + G    + +Y  E +F  L         +    A++ IQ+GC+ FC++C +P+ 
Sbjct: 120 -FEREKNGNIFQEKEYQ-EYEFATL---------REMTRAYVKIQDGCNHFCSYCKIPFA 168

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258
           RG   SR    ++ E  KL+++G  E+ L+G +++A+ G+  + EK +F  LL  + +I+
Sbjct: 169 RGKSRSRKKENILKEIEKLVEDGFKEVILIGIDLSAY-GEDFE-EKDSFESLLEDILKIR 226

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
            L R+R  + +P  ++D  I+   + + LMP+LH+ +QS  D +LK+M R + +   R+ 
Sbjct: 227 DLKRVRIGSVYPDKITDRFIELFKNKN-LMPHLHISLQSCDDTVLKNMRRNYGSLLIRES 285

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           + +++S   ++  ++D IVGFP E +  F+ T D++ +I ++    F+YS R GT  SNM
Sbjct: 286 LLKLKSKIKNMEFTADVIVGFPKEDETMFQNTYDVIREIEFSGLHIFQYSDREGTIASNM 345

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSP-WLQS 437
             +VD   K +R   L    +E  +      + + +EVL+E+   + G+  G S  +L+ 
Sbjct: 346 DGKVDAKTKKQRADRLDSLKQEMLIESRKKYLEKNLEVLVEEE--KDGEYFGYSQNYLRV 403

Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGE 466
              + +   I  +I V+I  V+ + L GE
Sbjct: 404 KFKSDEKELINKLINVKIKCVENNVLIGE 432


>gi|260887121|ref|ZP_05898384.1| RNA modification enzyme, MiaB family [Selenomonas sputigena ATCC
           35185]
 gi|330839106|ref|YP_004413686.1| Ribosomal protein S12 methylthiotransferase rimO [Selenomonas
           sputigena ATCC 35185]
 gi|260863183|gb|EEX77683.1| RNA modification enzyme, MiaB family [Selenomonas sputigena ATCC
           35185]
 gi|329746870|gb|AEC00227.1| Ribosomal protein S12 methylthiotransferase rimO [Selenomonas
           sputigena ATCC 35185]
          Length = 442

 Score =  178 bits (452), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 133/451 (29%), Positives = 223/451 (49%), Gaps = 29/451 (6%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ D+  M  +    G E      +A++I++NTC   + A E+  + +  +   
Sbjct: 7   SLGCAKNLVDTEVMLGILQDNGIELTPDPAEAEIIIVNTCAFIQSAKEESITTVLNMAEY 66

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
           K +    G    +++AGC+ +   +E+L   P  + ++G   + R+ E +     G R+V
Sbjct: 67  KET----GCCRSLIIAGCLGERYHQELLDDMPEADAIIGTGAWNRIMEAVRETLAGNRIV 122

Query: 151 ---DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
              + +   + K  R+ +    Y      +A++ I EGCD  C FC +P  RG   SRS+
Sbjct: 123 LAGENEIVYDAKTPRI-LTTPAY------SAYVKIAEGCDHRCAFCAIPLIRGRFRSRSM 175

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
             +  E  +L   GV EI L+ Q+ + + GK + GE  + + LL  L +I+ +  +R   
Sbjct: 176 DDIKREVTRLAAEGVREIILVAQD-STYYGKDIYGEP-SLARLLQELVKIEKVEWMRVLY 233

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
            +P++ +D LI        +  Y+ LP+Q   + ILKSM R  T  E   ++ +IR+  P
Sbjct: 234 CYPKNFTDELITTIAQEPKICKYVDLPLQHAHNSILKSMRRPDTQEEVVTLLKKIRARIP 293

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
           ++A+ S FIVGFPGETD  ++     + +  + +   F YS    TP ++M+ QV E+V 
Sbjct: 294 NVAVRSTFIVGFPGETDAQYQTLRRFLIEQRFEKVGIFTYSQEEDTPAASMMRQVPEDVV 353

Query: 388 AER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GRS----PWL--QS 437
            ER   L+ +Q K+ E+    N    G+ ++VL+E   +E+  L  GRS    P +  Q 
Sbjct: 354 QERYHDLMSVQCKISEE---LNQGLEGKELDVLVEGRDEEQPNLAFGRSYREAPGVDGQI 410

Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            +        GDI++VRI         GELV
Sbjct: 411 FIEGDAVSRPGDIVRVRIVQGFTYDAVGELV 441


>gi|291543502|emb|CBL16611.1| SSU ribosomal protein S12P methylthiotransferase [Ruminococcus sp.
           18P13]
          Length = 447

 Score =  178 bits (452), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 127/450 (28%), Positives = 223/450 (49%), Gaps = 27/450 (6%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ DS RM  +   +GYE V    DAD++V+NTC   + A E+    +  +  L
Sbjct: 9   SLGCAKNLVDSERMLHLIRQRGYELVTEPGDADVVVVNTCGFIQSAKEEAIDTILELCQL 68

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
           K     EG    +++ GC+A+   +E     P V+ V+G     ++ ++++     +R+V
Sbjct: 69  K----AEGSIRKIIMTGCLAERYRQEAADEFPEVDAVIGIGDQGQIIDVIDHVLANERMV 124

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVT-----AFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                        S +D   + +R ++     A+L I EGC+  CT+C +P  RG   S 
Sbjct: 125 HF----------CSKLDVPMSGRRVLSTLPFFAYLKIAEGCNNCCTYCAIPMIRGGFRSV 174

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            +  V++EAR L ++GV E+T++ Q+   + G+ L GE     +LL  L  I+G+  +R 
Sbjct: 175 PMEDVLEEARWLTEHGVTELTVIAQDTTRY-GEDLYGES-RLPELLEQLCRIQGIRWIRV 232

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
              +P  ++D L++     + L+ YL +P+Q  +  IL+ MNR+  A     ++++IR +
Sbjct: 233 LYCYPERITDKLLEVMAREEKLVKYLDIPIQHCNGDILRRMNRQGDAGTLAALLNKIRQM 292

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            PDI + +  I GFPGET+  F    + +    + +   F YS   GT  +   +QV E+
Sbjct: 293 IPDITLRTTLITGFPGETEAQFTELAEFIQAQRFDRLGCFAYSQEEGTRAAEFPDQVPED 352

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK----GKLVGRSPWLQSVVL- 440
           V+  R   L ++ +      N+A +GQ+   +IE + +      G+    +P +   V  
Sbjct: 353 VRQHRADILMEQQQLIVEEKNNARLGQVCTAVIEGYDRWAECWFGRTAADAPDIDGKVFI 412

Query: 441 -NSKNHNIGDIIKVRITDVKISTLYGELVV 469
            +    +IGD + VR+ +V      GE+V 
Sbjct: 413 RSETPLHIGDYVTVRLDEVLDYDFVGEVVT 442


>gi|159901008|ref|YP_001547255.1| MiaB-like tRNA modifying enzyme YliG [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|238066313|sp|A9AZS3|RIMO_HERA2 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|159894047|gb|ABX07127.1| MiaB-like tRNA modifying enzyme YliG [Herpetosiphon aurantiacus
           ATCC 23779]
          Length = 469

 Score =  178 bits (452), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 126/479 (26%), Positives = 236/479 (49%), Gaps = 47/479 (9%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +F + + GC  N  DS  M  +   +G+  V+S D AD++++NTC     A E+    L 
Sbjct: 2   KFHIITLGCPKNTVDSEGMHGILTREGHTAVDSSDGADVVIVNTCSFINAAREETVGVLQ 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL----- 140
            + N K    K      ++ AGC+A++ G+ +  R P ++  +  + + R+  ++     
Sbjct: 62  ELANNKAPGQK------LIAAGCMAESHGDVLRSRVPKLDATLSTKEWMRIGSVVAGGVA 115

Query: 141 --ERARFGKRVVD-TDYSVEDKFERLSIVD-------GGYN---------RKRGVTAFLT 181
             +   FG  ++     ++      LS+         G Y           KRG +A+L 
Sbjct: 116 PSKTTGFGIPLMGGAPSAMPSTGLNLSLTPAATGDSLGAYGDWRTTAITRNKRGPSAYLK 175

Query: 182 IQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD 241
           I +GC+  C FC +P  +G   S+++  ++ EAR+L++ GV EI L+ Q++  + G+ L 
Sbjct: 176 ISDGCNLRCAFCTIPSFKGDMRSKAVGSILGEARELVEAGVQEIILVAQHLTDY-GRDLG 234

Query: 242 GEKCTFSDLLYSLSEIKGLVR-LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300
            ++     LL  L+ +    R +R   ++P+ ++  L++    L  L  Y+ +P+Q    
Sbjct: 235 MKQNGLGVLLEELAAVVPADRWIRLMYAYPQSVTPDLVETMARLPQLCHYVDMPLQHAHP 294

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
             L+ M R     + + I++ +R   PD+++ + FIVG+PGET D+F+A ++ ++++ + 
Sbjct: 295 DTLRRMRRPPDTDKTKAIVNSLRQAMPDLSLRTTFIVGYPGETRDEFKALLEFLEEMQFD 354

Query: 361 QAFSFKYSPRLGTPGSNMLEQVDENVKAERL---LCLQKKL-REQQVSFNDACVGQIIEV 416
           +   F+YS   GT    + +QV E VK  R    + +Q+ + R +   F    VGQ ++V
Sbjct: 355 RVGMFRYSLEPGTVAGELPDQVAERVKERRWNEAMAVQQVISRARTARF----VGQTMKV 410

Query: 417 LIEKHGKE---KGKLVGRS----PWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           L+E  G +   +  +VGRS    P +  +V      ++G   K+ I       L+GE+V
Sbjct: 411 LVEGTGTDDDGRAIVVGRSYRDAPEVDGLVFGYGAADVGQFAKIAINKTTDYDLWGEIV 469


>gi|16127914|ref|NP_422478.1| hypothetical protein CC_3684 [Caulobacter crescentus CB15]
 gi|221236734|ref|YP_002519171.1| tRNA 2-methylthioadenosine synthase-like protein [Caulobacter
           crescentus NA1000]
 gi|13425446|gb|AAK25646.1| conserved hypothetical protein [Caulobacter crescentus CB15]
 gi|220965907|gb|ACL97263.1| tRNA 2-methylthioadenosine synthase-like protein [Caulobacter
           crescentus NA1000]
          Length = 443

 Score =  178 bits (452), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 131/436 (30%), Positives = 205/436 (47%), Gaps = 35/436 (8%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P    V ++GC++N Y+S  M     + G         +D +V NTC +  +A  +    
Sbjct: 30  PDGVDVVTFGCRLNAYESEAMRARASADGL--------SDAVVFNTCAVTNEAVRQARQA 81

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           + + R       +E     ++V GC AQ +        P V++V+G       P  L   
Sbjct: 82  IRKAR-------RERPGARIIVTGCAAQVD-PAAFAAMPEVDLVLG-NAEKAAPGALTDT 132

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
               RV D   S+++    L  +DG  +R R   A++ +Q GCD  CTFC++PY RG   
Sbjct: 133 STRVRVNDI-MSIKETAGHL--IDGLKDRAR---AYVEVQNGCDHRCTFCIIPYGRGNSR 186

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           S    +VV++ RKL   G  E+ L G +V +W G  L G+      +   L  +  L RL
Sbjct: 187 SAPAGEVVEQVRKLAAEGYREVVLTGVDVTSW-GADLPGQPTLGQLVGRILRMVPDLPRL 245

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R ++    ++   L K       LMPYLHL +Q+G + ILK M RRH+  +  +++  +R
Sbjct: 246 RLSSIDAAEIDPDLFKLLETEPRLMPYLHLSLQAGDNLILKRMKRRHSREDALKLVAEVR 305

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
            VRPD A  +D I GFP ETD+ F  T+ LV++ G A    F YS R GTP + M     
Sbjct: 306 RVRPDTAFGADLIAGFPTETDEAFENTLKLVEEAGLAFLHVFPYSARPGTPAARMPPVKG 365

Query: 384 ENVK--AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK------LVGRSPWL 435
             +K  A RL    ++  E+ +      VG+++  L+E+ G  + +        G +P  
Sbjct: 366 PVIKDRARRLREAGQRGLERHLQRQ---VGRVLSGLVERDGVARAEDFTEIAFAGEAPSG 422

Query: 436 QSVVLNSKNHNIGDII 451
           Q +      H+   +I
Sbjct: 423 QILAFRVTGHDGSRVI 438


>gi|269303129|gb|ACZ33229.1| RNA modification enzyme, MiaB family [Chlamydophila pneumoniae
           LPCoLN]
          Length = 468

 Score =  178 bits (451), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 115/416 (27%), Positives = 202/416 (48%), Gaps = 20/416 (4%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ DS  M  +    GYE  N ++DAD ++LNTC   + A ++   +L  + ++
Sbjct: 22  SLGCSRNLVDSEVMLGILLKAGYESTNEIEDADYLILNTCAFLKSARDEAKDYLDHLIDV 81

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
           K    K      ++V GC+     +E+      ++ ++G      +   +E    G+++ 
Sbjct: 82  KKENAK------IIVTGCMTSNHKDELKPWMSHIHYLLGSGDVENILSAIESRESGEKIS 135

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
              Y    +  R       Y       A+L + EGC K C FC++P  +G   S+ L Q+
Sbjct: 136 AKSYIEMGEVPRQLSTPKHY-------AYLKVAEGCRKRCAFCIIPSIKGKLRSKPLDQI 188

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT-FSDLLYSLSEIKGLVRLRYTTSH 269
           + E R L++NGV EI L+ Q++  + GK L  ++ +    LL+ L +  G   LR    +
Sbjct: 189 LKEFRILVNNGVKEIILIAQDLGDY-GKDLSTDRSSQLESLLHELLKEPGDYWLRMLYLY 247

Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329
           P ++SD +I        L+PY+ +P+Q  ++RILK M R  +  +    ++++R+  P +
Sbjct: 248 PDEVSDGIIDLMRSNPKLLPYVDIPLQHINNRILKQMRRTTSREQILGFLEKLRAKVPQV 307

Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAE 389
            I S  IVGFPGET ++F+   D + +        F YS    TP + + +Q+ E VK  
Sbjct: 308 YIRSSVIVGFPGETQEEFQELADFIGEGWIDNLGIFLYSQEANTPAAELPDQIPEKVKES 367

Query: 390 RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-----GRSPWLQSVVL 440
           RL  L +  +      N   +G+ IE +I+ +  E   L+     G++P +   ++
Sbjct: 368 RLKILSQIQKRNVDKHNQKLIGEKIEAVIDNYHPETNLLLTARFYGQAPEVDPCII 423


>gi|33599243|ref|NP_886803.1| hypothetical protein BB0254 [Bordetella bronchiseptica RB50]
 gi|81432407|sp|Q7WQS2|RIMO_BORBR RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|33575289|emb|CAE30752.1| conserved hypothetical protein [Bordetella bronchiseptica RB50]
          Length = 439

 Score =  178 bits (451), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 150/471 (31%), Positives = 229/471 (48%), Gaps = 60/471 (12%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  FV S G    + DS R+     ++GYE     +DAD++V+NTC   + A  +    
Sbjct: 4   PKVGFV-SLGRPKALVDSERILTQLRTEGYEVTPEYNDADVVVVNTCGFIDSAKAESLEA 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRR-SPIVNVVVGPQTYYRLPELLER 142
           +G         I E G   V+V GC+   E   ++R+  P V  V GPQ Y    E + R
Sbjct: 63  IGEA-------IAENGK--VIVTGCMGVEES--VIRQVHPSVLAVTGPQQY----EEVVR 107

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           A  G      D++       L +V   G        A+L I EGC+  C+FC++P  RG 
Sbjct: 108 AVHGVAPPRQDHN-----PYLDLVPPQGVKLTPRHYAYLKISEGCNHRCSFCIIPSMRGD 162

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDL 250
            +SR +  V+ EA +L+  GV E+ ++ Q+ +A           W G+ +   K   ++L
Sbjct: 163 LVSRPVGDVLSEAERLVRAGVKELLVISQDTSAYGVDIKYRSGFWNGRPV---KTRMTEL 219

Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
             +LSE+    RL Y   +P    D +I    D  VL PYL +P Q  S RIL++M R  
Sbjct: 220 CAALSELGVWTRLHYVYPYPH--VDEVIGLMADGKVL-PYLDIPFQHASPRILRAMKR-- 274

Query: 311 TAYEYRQI--IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
            A+E + +  I R R   PD+ + S FIVGFPGET++DF+  +D + +    +   F+YS
Sbjct: 275 PAFEDKTLARIKRWREECPDLTLRSTFIVGFPGETEEDFQYLLDWMSEAQLDRVGCFQYS 334

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDA----CVGQIIEVLIEKHGKE 424
           P  G P + +   V + VK ER     ++  E Q + + A     VG+ I+VLI+   +E
Sbjct: 335 PVEGAPANTLDNPVPDEVKQERW----ERFMEHQQAISTARLSTRVGREIDVLIDSVDEE 390

Query: 425 KGKLVGRS----PWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELVV 469
               VGRS    P +   V       +  GD+++VR+TD     L+GE + 
Sbjct: 391 GA--VGRSSADAPEIDGCVYVDSEQPLKAGDMVRVRVTDSDEYDLWGERIA 439


>gi|154498439|ref|ZP_02036817.1| hypothetical protein BACCAP_02428 [Bacteroides capillosus ATCC
           29799]
 gi|150272507|gb|EDM99692.1| hypothetical protein BACCAP_02428 [Bacteroides capillosus ATCC
           29799]
          Length = 449

 Score =  178 bits (451), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 136/451 (30%), Positives = 233/451 (51%), Gaps = 34/451 (7%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ ++ +M  +    G++ V + + AD+ VLNTC   + A  +    +  +  L
Sbjct: 16  SLGCAKNLVNTEQMMALCRDAGHQVVANPEGADVAVLNTCGFIDSAKSEAIDNILELAEL 75

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
           K+      G LLV   GC++Q   +E++   P V+ V+G  +Y  +   +E    G +  
Sbjct: 76  KSKGTL--GKLLVT--GCLSQRYKDELMEEMPEVDGVLGTGSYTDIVPAVESVMEGDQPT 131

Query: 151 ---DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
              D D++VED    +S            TA+L I EGCD  C++C++PY RG   SR++
Sbjct: 132 FFGDIDHTVEDGARMVS--------TPAYTAYLKIAEGCDNRCSYCIIPYLRGRYRSRTM 183

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIK-GLVRLRY 265
             ++ EA++L D GV EI ++ Q++  +   G D  +K    +LL  L ++    VRL Y
Sbjct: 184 ESLLAEAKELADRGVKEIIVIAQDITRY---GTDLYKKRMLGELLKELCKLPFHWVRLHY 240

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
              +P ++ D LI        ++ Y+ +P+Q  +D++L+SMNRR T  E   ++D++R+ 
Sbjct: 241 L--YPDELDDDLIDVIASEPKILKYIDIPLQHINDKLLRSMNRRGTKAEILALLDKLRAR 298

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P + + +  I G PGE +++F    D + +    +A  F++SP  GTP + M +QVD +
Sbjct: 299 IPGLVLRTSLIAGLPGEGEEEFEELCDFLREAHIERAGIFQFSPEEGTPAAVMPDQVDPD 358

Query: 386 VKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSV 438
             A R   L+ LQ ++ +   +FN++ +G+ +EVL E    + G   GR    SP +   
Sbjct: 359 TAARRVELLVDLQSRVMD---AFNESRLGETLEVLCEGFDPDMGCYAGRSYADSPDVDGK 415

Query: 439 VLNSKNHNI--GDIIKVRITDVKISTLYGEL 467
           V  +    +  G  + VRIT  +   L GE+
Sbjct: 416 VFFTAAGLVPAGTFVNVRITGTEDGDLMGEI 446


>gi|325928882|ref|ZP_08190045.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Xanthomonas
           perforans 91-118]
 gi|325540743|gb|EGD12322.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Xanthomonas
           perforans 91-118]
          Length = 458

 Score =  178 bits (451), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 139/460 (30%), Positives = 216/460 (46%), Gaps = 44/460 (9%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  FV S GC   + DS R+      +GY+ V S D AD++V+NTC   + A  +    
Sbjct: 6   PKVGFV-SLGCPKALVDSERILTQLRVEGYDIVPSYDAADVVVVNTCGFIDSAVTESLDA 64

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G   N             V+V GC+ +   E+I    P V  V GPQ Y  + E +  A
Sbjct: 65  IGEAMNANGK---------VIVTGCLGK-RPEQIREAYPQVLAVSGPQDYQSVMEAVHAA 114

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
              +          D F  L + D G        A+L I EGC+  C+FC++P  RG  +
Sbjct: 115 LPPRH---------DPFVDL-VPDYGIKLTPRHYAYLKISEGCNHRCSFCIIPSMRGDLV 164

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS---------L 254
           SR + +V+ EA +L+  GV E+ ++ Q+ +A+ G  L   +  + D +Y          L
Sbjct: 165 SRPVDEVLREAERLVRGGVKELLVVSQDTSAY-GVDLKYAERPWRDRMYQTRMKALCEGL 223

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
           SE+    RL Y   +P       + A G L   +PYL +P Q  S RILK M R     +
Sbjct: 224 SELGVWTRLHYVYPYPHVDDVIGLMAEGKL---LPYLDIPFQHASPRILKLMKRPGAVEK 280

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
             + + R +++ P+I + S FIVGFPGETD +F + +D +D+    +  +F YSP  G  
Sbjct: 281 TLERVQRWKAMCPEITVRSTFIVGFPGETDAEFESLLDFLDQAQLDRVGAFAYSPVDGAS 340

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS-- 432
            + + +QV E VK ERL     K  +      ++ +G + + L++    E    V RS  
Sbjct: 341 ANALPDQVPEEVKHERLARFMAKQAQISALRLESKIGSVQQCLVDV--IEDDIAVARSRA 398

Query: 433 --PWLQSVVLNSKNH----NIGDIIKVRITDVKISTLYGE 466
             P +  +V           +GD++ V ITD     L+G+
Sbjct: 399 DAPEIDGLVHIQNGGELGLKVGDLVDVEITDSDEHDLFGD 438


>gi|281357420|ref|ZP_06243908.1| MiaB-like tRNA modifying enzyme [Victivallis vadensis ATCC BAA-548]
 gi|281316023|gb|EFB00049.1| MiaB-like tRNA modifying enzyme [Victivallis vadensis ATCC BAA-548]
          Length = 432

 Score =  178 bits (451), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 126/432 (29%), Positives = 214/432 (49%), Gaps = 22/432 (5%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           + + GC++N  DS  + D     GY  V S+D  DL+V+N+C +  +AA K    + + R
Sbjct: 7   LHTLGCRLNSADSALLVDRLEKAGYSVVQSVDSVDLVVVNSCTVTAEAARKSRQAVRKFR 66

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ----TYYRLPELLERAR 144
                        L+VV GC A+ + +  L+      V+  P+    +   L  L  R  
Sbjct: 67  ASYPG-------ALIVVTGCSAELDRDAYLKDGAASVVLSNPEKRGISELILDYLAGRHE 119

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G +    +  V+  F   +I    +  +    AFL IQEGC+ FC++C+VPY RG E S
Sbjct: 120 LGGKAASLNEPVQ-AFHEEAISRFPFRSR----AFLKIQEGCNNFCSYCIVPYARGPERS 174

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           RS  +V+ + R+ +  G  E+ L G N  A+   G D        L+  +  I G  R+R
Sbjct: 175 RSFDEVLADCRQAVAAGYPELVLTGVNTCAYFDAGRD-----LGALVREVCRIDGNFRVR 229

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
            +++ P   +  L++       +  +LHL +Q+G +RILK+MNR +   +Y +     R 
Sbjct: 230 LSSTEPHPHNIGLLEVMASEPKVCRFLHLALQNGCNRILKAMNRHYRREDYAEFARIARE 289

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             P I + SD I+GFPGET++DF   +  V+++ +A    F YSPR GTP +++  ++  
Sbjct: 290 KIPGIHLGSDLILGFPGETEEDFADGLAFVEQMAFANLHIFTYSPRSGTPAASLPGRIPP 349

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
            V   R   L++     +  F ++ +GQ++ V+ E  G++ G   G S    +V + + +
Sbjct: 350 EVAKLRYRKLKEVAEASRRKFVESQLGQVLPVIFETVGRD-GLARGWSDNYLAVRVPAGS 408

Query: 445 HNIGDIIKVRIT 456
             +G I+ +  T
Sbjct: 409 VELGTIVDIAAT 420


>gi|295103959|emb|CBL01503.1| SSU ribosomal protein S12P methylthiotransferase [Faecalibacterium
           prausnitzii SL3/3]
          Length = 441

 Score =  178 bits (451), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 134/451 (29%), Positives = 221/451 (49%), Gaps = 30/451 (6%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N  D   M  +  S G+E V  + +AD+I++NTC   E A  +    +      
Sbjct: 7   SLGCPKNQVDLDVMVHILLSAGHETVADLAEADVILVNTCGFIESAKTEAIENILEACAY 66

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
           K    ++  +L V+V GC+A+    +I    P V+ VVG  +   +  ++ER   G+  +
Sbjct: 67  K----QQNPNLKVIVTGCLAERYRSQIEEEIPEVDAVVGCASNKAIDTIVERLFHGEDHL 122

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTA---FLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
           ++ Y  +  F        G  R  G  A   +L I EGC+  C +C +P  RG   SR +
Sbjct: 123 ES-YGAKKDFPL------GGKRVIGTPAHYAYLKIAEGCNNRCHYCAIPGIRGPLHSRDM 175

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYT 266
           +  V EAR L   GV E+ ++ Q+  A+   G D G+  +  +LL  L+++ GL  +R  
Sbjct: 176 ADCVAEARWLAGEGVKELIVVAQDPTAY---GEDWGKPGSICELLDKLNKVPGLEWIRIM 232

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
            ++P  ++D  I A    + ++PYL LP+Q  +D ILK+MNRR T  E  ++I ++R   
Sbjct: 233 YAYPERITDEFIAAMKRNEKVVPYLDLPIQHCNDTILKNMNRRSTRAELLEVIGKLRREI 292

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           P I + +  I GFPGET++ F    + V ++ + +   F YS    T  + M  Q+++ V
Sbjct: 293 PGITLRTTLIAGFPGETEEQFEDLCNFVKEVQFDRLGCFAYSAEENTVAAKMDGQIEQEV 352

Query: 387 K---AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG----KLVGRSPWLQSVV 439
           K   AE ++ +Q  +  Q+ +     VGQ + VL +   +E G    +  G +P +   V
Sbjct: 353 KDKRAELVMQIQTGIMAQKQAEK---VGQTVHVLCDGIDEENGLYLCRTTGDAPEVDGCV 409

Query: 440 LNSKNHNI--GDIIKVRITDVKISTLYGELV 468
             S    +  G    V + D  +  LYG +V
Sbjct: 410 CVSSEEPLYPGQFYDVLVEDSDLYDLYGTVV 440


>gi|289663191|ref|ZP_06484772.1| hypothetical protein XcampvN_08922 [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 454

 Score =  178 bits (451), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 140/460 (30%), Positives = 214/460 (46%), Gaps = 44/460 (9%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  FV S GC   + DS R+      +GY+ V S D AD++V+NTC   + A  +    
Sbjct: 6   PKVGFV-SLGCPKALVDSERILTQLRVEGYDIVPSYDAADVVVVNTCGFIDSAVTESLDA 64

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G   N             V+V GC+ +   E+I    P V  V GPQ Y  + E +  A
Sbjct: 65  IGEAMNANGK---------VIVTGCLGK-RPEQIREAYPQVLAVSGPQDYQSVMEAVHAA 114

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
              +          D F  L + D G        A+L I EGC+  C+FC++P  RG  +
Sbjct: 115 LPPRH---------DPFVDL-VPDYGIKLTPRHYAYLKISEGCNHRCSFCIIPSMRGDLV 164

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS---------L 254
           SR + +V+ EA +L+  GV E+ ++ Q+ +A+ G  L   +  + D +Y          L
Sbjct: 165 SRPVDEVLREAERLVRGGVKELLVVSQDTSAY-GVDLKYAERPWRDRMYQTRMKALCEGL 223

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
           SE+    RL Y   +P       + A G L   +PYL +P Q  S RILK M R     +
Sbjct: 224 SELGVWTRLHYVYPYPHVDDVIPLMAEGKL---LPYLDIPFQHASPRILKLMKRPGAVEK 280

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
             + + R +++ P+I + S FIVGFPGETD +F + +D +D+    +  +F YSP  G  
Sbjct: 281 TLERVQRWKAMCPEITVRSTFIVGFPGETDAEFESLLDFLDQAQLDRVGAFAYSPVDGAG 340

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS-- 432
            + + + V E VK ERL     K  E      +A +G + + L++    E    V RS  
Sbjct: 341 ANALPDPVPEEVKQERLARFMAKQAEISALRLEAKIGSVQQCLVDL--IEDDIAVARSRA 398

Query: 433 --PWLQSVVLNSKNH----NIGDIIKVRITDVKISTLYGE 466
             P +   V           +GD++ V ITD     L+G+
Sbjct: 399 DAPEIDGFVHIQNGGELGLKVGDLVDVEITDSDEHDLFGD 438


>gi|288817533|ref|YP_003431880.1| 2-methylthioadenine synthetase [Hydrogenobacter thermophilus TK-6]
 gi|288786932|dbj|BAI68679.1| 2-methylthioadenine synthetase [Hydrogenobacter thermophilus TK-6]
 gi|308751136|gb|ADO44619.1| MiaB-like tRNA modifying enzyme [Hydrogenobacter thermophilus TK-6]
          Length = 410

 Score =  178 bits (451), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 137/439 (31%), Positives = 223/439 (50%), Gaps = 44/439 (10%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           FF  + GC+ N +D+  +   F  +GY+ V+  D AD+ V+NTC +   A       + R
Sbjct: 6   FF--TLGCRSNEFDTHFIAHQFQLKGYQVVD-FDKADIYVINTCSVTAGAERSSRQAIYR 62

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG---PQTYYRLPELLERA 143
            + L         + LVVV GC AQ    + L     V++VVG    +   R+ E     
Sbjct: 63  AKRL-------NPNSLVVVTGCYAQI-NPQALSELKEVDLVVGNTHKRDILRIVEEYLSE 114

Query: 144 RFGKRVVDTDY---SVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           R GK  VD  +   SVE  FE ++  +        V  F+ +QEGC++FC+FCV+P+ RG
Sbjct: 115 RKGKVYVDNVFRQNSVES-FELITYFEK-------VRPFVKVQEGCNRFCSFCVIPFARG 166

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
              S    +V+ EA  L + G  EI L G  +  + G  +  + C   DLL  L +I+G+
Sbjct: 167 KSRSVLKEKVLKEAELLAERGFKEIVLTGTQLTQY-GWDIATDLC---DLLKDLVKIRGI 222

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
             +R ++ +P ++S  L+      + + P+ HLP+QSGSDRIL+ M R ++  +Y  +++
Sbjct: 223 ELIRLSSLYPSEISQKLLDFVLLEEKIAPHFHLPLQSGSDRILQLMRRDYSVKDYVHLVE 282

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++   RP  ++ +D IVGFP E+D DF  T  L+ ++       F YS R GT    M  
Sbjct: 283 KVIEKRPLSSVGTDVIVGFPSESDKDFEETYKLLSQLPIHYMHVFPYSDREGTKACKMSR 342

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRSPWLQSVV 439
           +V + VK ER+  L K L +Q+ +          E L +  GKE +  ++  +  L    
Sbjct: 343 KVSQKVKKERVKTL-KSLDQQKRA----------EFLKKNEGKELRALVIEENMLLTENY 391

Query: 440 LNSKNH---NIGDIIKVRI 455
           LN +     +IG++++V++
Sbjct: 392 LNLEREGYTSIGELVRVKV 410


>gi|317047503|ref|YP_004115151.1| MiaB-like tRNA modifying enzyme YliG [Pantoea sp. At-9b]
 gi|316949120|gb|ADU68595.1| MiaB-like tRNA modifying enzyme YliG [Pantoea sp. At-9b]
          Length = 441

 Score =  178 bits (451), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 135/467 (28%), Positives = 230/467 (49%), Gaps = 54/467 (11%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P R    S GC  N+ DS R+     ++GY+ V   DDA+++++NTC   + A ++    
Sbjct: 7   PPRVGFVSLGCPKNLVDSERILTELRTEGYDVVPRYDDAEIVIVNTCGFIDSAVQESLEA 66

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G   N       E G   V+V GC+  A+ ++I    P V  + GP +Y          
Sbjct: 67  IGEALN-------ENGK--VIVTGCLG-AKVDQIREVHPKVLEITGPHSY---------- 106

Query: 144 RFGKRVVDTDYSVEDKFER---LSIV-DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
              ++V+   +    K E    LS+V   G        A+L I EGC+  CTFC++P  R
Sbjct: 107 ---EQVLSHVHHYVPKPEHNPFLSLVPQQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMR 163

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFS 248
           G   SR +  V+DEA++L++ GV E+ ++ Q+ +A           W G  +   K +  
Sbjct: 164 GDLDSRPIGAVLDEAKRLVEAGVKELLVISQDTSAYGVDVKHRTGFWNGSPV---KTSMV 220

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
            L   L+++   VRL Y   +P       + A G +   +PYL +P+Q  S RILK M R
Sbjct: 221 SLCEQLAKLGVWVRLHYVYPYPHVDDVIPLMAEGKI---LPYLDIPLQHASPRILKLMKR 277

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
                   + I R R + P++ + S FIVGFPGET++DF+  +D + +    +   F+YS
Sbjct: 278 PGAVERTLERIKRWREICPELTLRSTFIVGFPGETEEDFQMLLDFLKEARLDRVGCFQYS 337

Query: 369 PRLGTPGSNMLEQVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK 425
           P  G   + + + V ++VK    ER + LQ+++  +++      +G+ I V+I++  +E 
Sbjct: 338 PVEGATANQLPDPVPDDVKQARFERFMQLQQQISAERLQEK---IGREILVIIDEVDEEG 394

Query: 426 --GKLVGRSPWLQ-SVVLNSKNH-NIGDIIKVRITDVKISTLYGELV 468
             G+ +  +P +  +V LN      +GD+++V++       L+G  V
Sbjct: 395 AVGRSMADAPEIDGAVYLNGDRQVKVGDVVRVKVDHADEYDLWGTRV 441


>gi|218532165|ref|YP_002422981.1| ribosomal protein S12 methylthiotransferase [Methylobacterium
           chloromethanicum CM4]
 gi|238066390|sp|B7L2K9|RIMO_METC4 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|218524468|gb|ACK85053.1| MiaB-like tRNA modifying enzyme YliG [Methylobacterium
           chloromethanicum CM4]
          Length = 448

 Score =  178 bits (451), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 138/458 (30%), Positives = 209/458 (45%), Gaps = 42/458 (9%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
            P+  FV S GC   + DS R+     ++GYE     D AD++++NTC   + A  +  +
Sbjct: 15  APRISFV-SLGCPKALVDSERILTHLRAEGYELSRRHDGADVVIVNTCGFLDSAKAESLA 73

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +G     +N R        V+V GC+  A+ EEI  + P +  V GPQ Y  +   +  
Sbjct: 74  AIGEAMA-ENGR--------VIVTGCMG-AQPEEIREKYPNLLAVTGPQAYESVVAAVHE 123

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           A              D F  L I   G        A+L I EGC+  CTFC++P  RG  
Sbjct: 124 AV---------PPAHDPFLDL-IPPQGVKLTPRHYAYLKISEGCNNRCTFCIIPSLRGDL 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT-----------FSDLL 251
           +SR    V+ EA KL+  GV E+ ++ Q+ +A+   G+D    T           F DL 
Sbjct: 174 VSRPAGDVLREAEKLVKAGVKELLVVSQDTSAY---GIDTRYATSPWQDREVRARFYDLA 230

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
             L E+   VRL Y   +P       + A G +   +PYL +P+Q  S  +LK M R   
Sbjct: 231 SELGELGAWVRLHYVYPYPHVDEVIPLMAEGKI---LPYLDMPLQHASPSVLKRMRRPGN 287

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
             +    I R R + PD+AI S FIVGFPGETD +F   +D + +    +   F+Y P  
Sbjct: 288 QEKQLDRIRRWREICPDLAIRSTFIVGFPGETDAEFEELLDWIREARLERVGCFEYEPVR 347

Query: 372 GTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK--EKGKLV 429
           G   +++   V   VKAER     +      +    A VG+ + V+I++ G    +G+  
Sbjct: 348 GATANDLGLLVPPEVKAERKRRFMEAQSHVSLRLQRAKVGKRLSVIIDEAGPTGARGRSK 407

Query: 430 GRSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYG 465
             +P +   V  +    +  GDI+ V+I       L+G
Sbjct: 408 ADAPEIDGSVHVTSRRPVRPGDIVTVKIERADAYDLHG 445


>gi|170748057|ref|YP_001754317.1| MiaB-like tRNA modifying enzyme YliG [Methylobacterium
           radiotolerans JCM 2831]
 gi|238066400|sp|B1M6H4|RIMO_METRJ RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|170654579|gb|ACB23634.1| MiaB-like tRNA modifying enzyme YliG [Methylobacterium
           radiotolerans JCM 2831]
          Length = 448

 Score =  178 bits (451), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 142/468 (30%), Positives = 220/468 (47%), Gaps = 56/468 (11%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
            P+  FV S GC   + DS R+     ++GYE     D AD++++NTC   + A  +  S
Sbjct: 15  APKISFV-SLGCPKALVDSERILTHLRAEGYELARRHDGADVVIVNTCGFLDSAKAESLS 73

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +G     +N R        V+V GC+  A+ EEI  + P +  V GPQ Y  +   +  
Sbjct: 74  AIGEAMA-ENGR--------VIVTGCMG-AQPEEIREKYPDLLAVTGPQAYESVVAAVHE 123

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           A              D F  L    G     R   A+L I EGC   C+FC++P  RG  
Sbjct: 124 AV---------PPAHDPFLDLVPPQGIKLTPRHY-AYLKISEGCSNRCSFCIIPSLRGNL 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLL 251
           +SR  + V+ EA KL+  GV E+ ++ Q+ +A           WR + +   +  F DL 
Sbjct: 174 VSRPAADVLREAEKLVKAGVKELLVVSQDTSAYGVDIRYSESPWRDRQV---RAKFYDLT 230

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
             L E+   VRL Y   +P       + A G +   +PYL +P+Q  S  +LK M R   
Sbjct: 231 RELGELGAWVRLHYVYPYPHVDEVIPLMAEGKV---LPYLDMPLQHASPSVLKRMRR--P 285

Query: 312 AYEYRQIIDRIRSVR---PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
             + RQ+ DRIRS R   PD+AI S FIVGFPGET+ +F   +  + +    +   F+Y 
Sbjct: 286 GNQERQL-DRIRSWRQTCPDLAIRSTFIVGFPGETEAEFEELLAWLQEAKLDRVGCFEYE 344

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQ----VSFNDACVGQIIEVLIE--KHG 422
           P  G   + + + V   VKAER    +++  E Q    +    A VG+ + V+++  + G
Sbjct: 345 PVAGATANALGDPVPPAVKAER----KRRFMETQNGIALRLQRAKVGKRLPVIVDSVEGG 400

Query: 423 KEKGKLVGRSPWLQSVVLNS--KNHNIGDIIKVRITDVKISTLYGELV 468
             +G+    +P +   V  +  +   +GDI+ V+I   +   LYG + 
Sbjct: 401 VARGRSKADAPEIDGTVHAAFRRPVRVGDIVTVKIDRAEAYDLYGSVA 448


>gi|309777726|ref|ZP_07672675.1| 2-methylthioadenine synthetase [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308914492|gb|EFP60283.1| 2-methylthioadenine synthetase [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 405

 Score =  177 bits (450), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 116/363 (31%), Positives = 184/363 (50%), Gaps = 21/363 (5%)

Query: 103 VVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFER 162
           ++V GC+AQ   E++ +  P ++ V+  + Y +L E+L++   G  ++  D     K ER
Sbjct: 46  LIVVGCLAQRYKEQLEQDIPEIDAVISIREYPQLHEILQQLLDGHDLISYD-----KCER 100

Query: 163 LSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGV 222
                      +  TA+L I EGC   CT+C +P  RG  +S  + Q+V EA KL   GV
Sbjct: 101 KV-------SSKPWTAYLKIAEGCSNHCTYCAIPLIRGDNVSFPIEQLVKEATKLAQRGV 153

Query: 223 CEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHG 282
            E+ ++ Q+   + G  L G +    DLL  L  I+    +R    +P ++   LI+   
Sbjct: 154 KELVVIAQDTTKY-GVDLYGRRALL-DLLKELHAIEDFHWIRILYMYPDEIDTELIEGMA 211

Query: 283 DLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGE 342
            L  ++PY  +P+Q  S+R+L+ MNRR +  E   ++ +IR+      + + FIVGFP E
Sbjct: 212 QLPKVLPYFDIPMQHASNRMLQLMNRRGSKEEVLTLVQKIRATFAYPTLRTTFIVGFPTE 271

Query: 343 TDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQ 402
            D DF   M  V+ I + +  +F YSP   TP   M   VDE VK  RL  L K+  E  
Sbjct: 272 QDADFEELMQFVEDIHWDRMGAFTYSPEEDTPAYTMDGAVDEEVKEARLAHLMKRQEEIS 331

Query: 403 VSFNDACVGQIIEVLIEKH----GKEKGKLVGRSP-WLQSVVLNSKNHNI--GDIIKVRI 455
           +      VG++IEVL+E      G  +G+ +  +P  +  +V+   +  I  G  +KVRI
Sbjct: 332 LENQKKMVGEVIEVLVEDQEGLSGIYRGRGISSAPDEVDGIVMFKSDRFIEFGSFVKVRI 391

Query: 456 TDV 458
           T+ 
Sbjct: 392 TEA 394


>gi|295101447|emb|CBK98992.1| SSU ribosomal protein S12P methylthiotransferase [Faecalibacterium
           prausnitzii L2-6]
          Length = 441

 Score =  177 bits (450), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 137/451 (30%), Positives = 221/451 (49%), Gaps = 30/451 (6%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N  D   M  +  S G+E V  + DAD+I++NTC   E A  +    +    + 
Sbjct: 7   SLGCPKNQVDLDVMVHILLSAGHETVADLADADVILVNTCGFIESAKTEAIENILEACSY 66

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
           K +      +L VVV GC+A+    +I    P V+ VVG  +   +  ++ R   G+  +
Sbjct: 67  KQAN----PNLKVVVTGCLAERYRSQIEEEIPEVDAVVGCASNKAIDSIVARLFNGEEHL 122

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTA---FLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
           ++ Y ++  F        G  R  G  A   +L I EGC+  C +C +P  RG   SR +
Sbjct: 123 ES-YGLKKDFPL------GGKRVIGTPAHYAYLKIAEGCNNRCHYCAIPGIRGPLRSREM 175

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYT 266
           +  V EAR L   GV E+ ++ Q+  A+   G D G+  +  +LL  L++I GL  +R  
Sbjct: 176 ADCVAEARWLAGEGVKELIIVAQDPTAY---GEDWGKPGSICELLDKLNKIPGLEWIRIM 232

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
            ++P  ++D  I A    + ++PYL LP+Q  +D ILK+MNRR    E   +I ++R   
Sbjct: 233 YAYPERITDDFIAAMKRNEKVLPYLDLPIQHCNDTILKNMNRRSNRAELLDVIGKLRREI 292

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           P+I + +  I GFPGET++ F    + V ++ + +   F YS    T  + M  Q+D+ V
Sbjct: 293 PNITLRTTLIAGFPGETEEQFEDLCNFVKEVQFDRLGCFAYSAEENTVAARMDGQIDQEV 352

Query: 387 K---AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVV 439
           K   AE ++ +Q  +  Q+ +   A VGQ + VL +    E G  + R+    P +   V
Sbjct: 353 KDKRAELVMQIQTGIMAQKQA---AKVGQTVRVLCDGVDDESGLYLCRTAADAPEVDGNV 409

Query: 440 LNSKNHNI--GDIIKVRITDVKISTLYGELV 468
             S    +  G+   V + D  +  LYG +V
Sbjct: 410 CVSSEEPLYPGEFYDVLVDDSDLYDLYGTVV 440


>gi|304314978|ref|YP_003850125.1| 2-methylthioadenine synthetase [Methanothermobacter marburgensis
           str. Marburg]
 gi|302588437|gb|ADL58812.1| predicted 2-methylthioadenine synthetase [Methanothermobacter
           marburgensis str. Marburg]
          Length = 427

 Score =  177 bits (450), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 138/450 (30%), Positives = 230/450 (51%), Gaps = 39/450 (8%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R +++++GC  N  DS  M  +    G   +  +D+AD+I+LNTC+++     KV + + 
Sbjct: 5   RVYIETFGCTFNQADSEIMAGVLSEAGAS-LTGIDEADVIILNTCYVKHPTEHKVINRIK 63

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           RIR +         D  +VVAGC+ + + +++   S   + + GP    R  E++  A  
Sbjct: 64  RIREMYP-------DKGLVVAGCMVEIDPQKLESISGDASWL-GPHQLMRTAEVVGAAYR 115

Query: 146 G--KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           G  KR+      V+    R+        R   +   + I EGC   C++C   + RG   
Sbjct: 116 GDVKRITGFTSDVKVGVPRV--------RSNPLIHIIQICEGCSGSCSYCCTRFARGSIQ 167

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVR 262
           S     +V EAR+ I+ G  EI L  Q+  A+   G D GE+   SDL+  ++EI G  R
Sbjct: 168 SYPSDIIVQEAREAIEAGCREIQLTAQDTAAY---GSDTGER--LSDLIREITEIPGDFR 222

Query: 263 LRYTTSHP----RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           +R    HP    RD+ D L++A     V   +LHLPVQSGSDR+L+ M R HT  ++R I
Sbjct: 223 VRVGMMHPASVLRDL-DGLVEAFRSEKVY-SFLHLPVQSGSDRVLRDMGRGHTVDDFRMI 280

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI--GYAQAFSFKYSPRLGTPGS 376
           +DR RS  P+I+I++D IVG+P E +DDF  T  L++++  G+     +++ PR  +   
Sbjct: 281 VDRFRSRIPEISIATDIIVGYPTEGEDDFLDTCRLLEEVRPGFIHLSKYRHRPRAFSSSL 340

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQ 436
           + ++  +   +++ +  L+ ++ E++   N   VG    +LI + G+ KG  +GR+    
Sbjct: 341 DEIDFRELRRRSKAVEELKGRITEEE---NRRLVGTTQNILIVERGR-KGGFIGRTDSYI 396

Query: 437 SVVLNSKNHNIGDIIKVRITDVKISTLYGE 466
            VV  + +  +G    VRI     + L  E
Sbjct: 397 PVV--THDGEVGSFRSVRIKRATGTYLIAE 424


>gi|160942860|ref|ZP_02090099.1| hypothetical protein FAEPRAM212_00336 [Faecalibacterium prausnitzii
           M21/2]
 gi|158445761|gb|EDP22764.1| hypothetical protein FAEPRAM212_00336 [Faecalibacterium prausnitzii
           M21/2]
          Length = 441

 Score =  177 bits (450), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 134/451 (29%), Positives = 221/451 (49%), Gaps = 30/451 (6%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N  D   M  +  S G+E V  + +AD+I++NTC   E A  +    +      
Sbjct: 7   SLGCPKNQVDLDVMVHILLSAGHETVADLAEADVILVNTCGFIESAKTEAIENILEACAY 66

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
           K    ++  +L V+V GC+A+    +I    P V+ VVG  +   +  ++ER   G+  +
Sbjct: 67  K----QQNPNLKVIVTGCLAERYRSQIEEEIPEVDAVVGCASNKAIDTIVERLFHGEDHL 122

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTA---FLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
           ++ Y  +  F        G  R  G  A   +L I EGC+  C +C +P  RG   SR +
Sbjct: 123 ES-YGAKKDFPL------GGKRVIGTPAHYAYLKIAEGCNNRCHYCAIPGIRGPLHSRDM 175

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYT 266
           +  V EAR L   GV E+ ++ Q+  A+   G D G+  +  +LL  L+++ GL  +R  
Sbjct: 176 ADCVAEARWLAGEGVKELIVVAQDPTAY---GEDWGKPGSICELLDKLNKVPGLEWIRIM 232

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
            ++P  ++D  I A    + ++PYL LP+Q  +D ILK+MNRR T  E  ++I ++R   
Sbjct: 233 YAYPERITDEFIAAMKRNEKVVPYLDLPIQHCNDTILKNMNRRSTRAELLEVIGKLRREI 292

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           P I + +  I GFPGET++ F    + V ++ + +   F YS    T  + M  Q+++ V
Sbjct: 293 PGITLRTTLIAGFPGETEEQFEDLCNFVKEVQFDRLGCFAYSAEENTVAARMDGQIEQEV 352

Query: 387 K---AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG----KLVGRSPWLQSVV 439
           K   AE ++ +Q  +  Q+ +     VGQ + VL +   +E G    +  G +P +   V
Sbjct: 353 KDKRAELVMQIQTGIMAQKQAEK---VGQTVHVLCDGIDEENGLYLCRTTGDAPEVDGCV 409

Query: 440 LNSKNHNI--GDIIKVRITDVKISTLYGELV 468
             S    +  G    V + D  +  LYG +V
Sbjct: 410 CVSSEEPLYPGQFYDVLVEDSDLYDLYGTVV 440


>gi|217077525|ref|YP_002335243.1| hypothetical protein THA_1459 [Thermosipho africanus TCF52B]
 gi|238066615|sp|B7ID25|RIMO_THEAB RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|217037380|gb|ACJ75902.1| conserved hypothetical protein [Thermosipho africanus TCF52B]
          Length = 427

 Score =  177 bits (450), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 132/450 (29%), Positives = 221/450 (49%), Gaps = 35/450 (7%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC----HIREKAAEKVYS 82
           F+V   GC  N  D   ++     +G   VN+++DAD +V++TC      ++++ E++ +
Sbjct: 3   FYVDVLGCPKNEADCALLKAYLEKKGNNIVNTIEDADAVVIDTCGFILEAKKESIEEILT 62

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
           +L     LK  R     DL V V GC+ Q  GEE+ +  P V+   G      LP     
Sbjct: 63  YL----ELKKER-----DLKVYVTGCLVQRYGEELKKEIPEVDGWFG-----ILPPEKIA 108

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
              GK  +     +    E +    G  + K+   A++ I +GCD+ C+FC +P  +G  
Sbjct: 109 ENIGKESI-----IPKNPEPVYEFGGRVDEKQ--YAYVKISDGCDRACSFCTIPLFKGSF 161

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR +  +V E   LI +G  EI L+ Q+   + G  L G K    +LL  +++I G   
Sbjct: 162 KSRKIDDIVKEVEYLILSGKKEIILVAQDTTGY-GIDLYG-KQMLPELLKRINDIPGDFW 219

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R    HP  ++D +I+A    D ++ Y  +PVQ GSD++LK MNR   +    +++++I
Sbjct: 220 IRVMYMHPDHITDEIIEAFS-YDKVLKYFDIPVQHGSDKVLKLMNRTKKSEHILKLVEKI 278

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R    D  + +  IVGFPGETD+DF   +D +  + + +  +F YS     P  +   +V
Sbjct: 279 RKRYEDAVLRTSIIVGFPGETDEDFEELLDFIKMVRFERLGAFIYSDEEEAPSYHFEGKV 338

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSV 438
            E V  ERL  L ++  +     N+  VG+  +VL ++  +E+G L+ RS    P +   
Sbjct: 339 PEIVAQERLDILMEEQSKISFEINEKMVGKTFKVLFDE--EEEGVLIARSYMDAPEIDGN 396

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           +        G   KV++T   +  L G++V
Sbjct: 397 IFVPGKFEEG-FFKVKVTSADVYDLEGKIV 425


>gi|78048443|ref|YP_364618.1| ribosomal protein S12 methylthiotransferase [Xanthomonas campestris
           pv. vesicatoria str. 85-10]
 gi|123771309|sp|Q3BRJ5|RIMO_XANC5 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|78036873|emb|CAJ24566.1| MiaB-family RNA modification enzyme [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
          Length = 458

 Score =  177 bits (450), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 139/460 (30%), Positives = 216/460 (46%), Gaps = 44/460 (9%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  FV S GC   + DS R+      +GY+ V S D AD++V+NTC   + A  +    
Sbjct: 6   PKVGFV-SLGCPKALVDSERILTQLRVEGYDIVPSYDAADVVVVNTCGFIDSAVTESLDA 64

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G   N             V+V GC+ +   E+I    P V  V GPQ Y  + E +  A
Sbjct: 65  IGEAMNANGK---------VIVTGCLGK-RPEQIREAYPQVLAVSGPQDYQSVMEAVHAA 114

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
              +          D F  L + D G        A+L I EGC+  C+FC++P  RG  +
Sbjct: 115 LPPRH---------DPFVDL-VPDYGIKLTPRHYAYLKISEGCNHRCSFCIIPSMRGDLV 164

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS---------L 254
           SR + +V+ EA +L+  GV E+ ++ Q+ +A+ G  L   +  + D +Y          L
Sbjct: 165 SRPVDEVLREAERLVRGGVKELLVVSQDTSAY-GVDLKYAERPWRDRMYQTRMKALCEGL 223

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
           SE+    RL Y   +P       + A G L   +PYL +P Q  S RILK M R     +
Sbjct: 224 SELGVWTRLHYVYPYPHVDDVIGLMAEGRL---LPYLDIPFQHASPRILKLMKRPGAVEK 280

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
             + + R +++ P+I + S FIVGFPGETD +F + +D +D+    +  +F YSP  G  
Sbjct: 281 TLERVQRWKAMCPEITVRSTFIVGFPGETDAEFESLLDFLDQAQLDRVGAFAYSPVDGAS 340

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS-- 432
            + + +QV E VK ERL     K  +      ++ +G + + L++    E    V RS  
Sbjct: 341 ANALPDQVPEEVKHERLARFMAKQAQISALRLESKIGSVQQCLVDV--IEDDIAVARSRA 398

Query: 433 --PWLQSVVLNSKNH----NIGDIIKVRITDVKISTLYGE 466
             P +  +V           +GD++ V ITD     L+G+
Sbjct: 399 DAPEIDGLVHIQNGGELGLKVGDLVDVEITDSDEHDLFGD 438


>gi|332797846|ref|YP_004459346.1| MiaB family RNA modification protein [Acidianus hospitalis W1]
 gi|332695581|gb|AEE95048.1| RNA modification enzyme, MiaB family [Acidianus hospitalis W1]
          Length = 417

 Score =  177 bits (450), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 140/447 (31%), Positives = 234/447 (52%), Gaps = 35/447 (7%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + + ++YGC +N  D+  M  +   + +E VN+ ++AD+IVLNTC +R +  E++ S   
Sbjct: 2   KVYFETYGCALNKGDTYIMMTLLKQRNHEIVNNPNEADVIVLNTCDVRLETGERMKS--- 58

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           RI+ L+    K G  L  VVAGC + AE   +   +P  +++ GPQ   ++ + +E    
Sbjct: 59  RIKELR----KFGKKL--VVAGCFSGAEPGVVKTLAPEASII-GPQALTKIIDAVE---- 107

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G+++   +       ER  I    +    G  A + I +GC   C+FC+    R    S 
Sbjct: 108 GEKIFSINA------ERSEITPRVF---EGKIAIIPIADGCAGDCSFCITKLARRTLRSY 158

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLR 264
           S+  +V+  ++ + NG  E+ L GQ+  A+   GLD G K   SDLL  +  I+G   +R
Sbjct: 159 SMRSIVEAVKEAVKNGAVEVELTGQDAAAY---GLDLGGKIKLSDLLNEVLSIEGDFMIR 215

Query: 265 YTTSHPRDMS---DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
                P   +   D +++A  +   L  +LHLPVQSG D +LK MNR++T  EY++++  
Sbjct: 216 IGMMTPEQFARDIDGILEAMRNPK-LFKFLHLPVQSGDDNVLKLMNRKYTVDEYKELVKE 274

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
            RS  P+I I++D I+G PGE ++ F  T++L+ +I + +     YS R  T  S +++Q
Sbjct: 275 ARSKIPNINITTDIIIGHPGEDENAFENTLELMKEIKFERVHLAMYSIRPNTR-SALMKQ 333

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           V ++VK ER+    K   +  +S +   + +  +V+  + GK KG ++GR+     V+LN
Sbjct: 334 VPDSVKKERMRIAYKLYEDISLSIHKEYLNKRTKVITTEEGK-KGSIIGRTLNYIPVILN 392

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                IG    V I D     L G +V
Sbjct: 393 GV--EIGKWYDVEIIDYSFFDLRGTVV 417


>gi|258620505|ref|ZP_05715543.1| conserved hypothetical protein [Vibrio mimicus VM573]
 gi|258587384|gb|EEW12095.1| conserved hypothetical protein [Vibrio mimicus VM573]
          Length = 470

 Score =  177 bits (450), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 132/453 (29%), Positives = 221/453 (48%), Gaps = 46/453 (10%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ DS R+     ++GYE VNS  D+D++++NTC   + A ++    +G     
Sbjct: 39  SLGCPKNLVDSERILTQLRTEGYEIVNSYHDSDVVIVNTCGFIDSAVQESLDTIGEA--- 95

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               +KE G   V+V GC+   E +EI +  P V  + GP  Y  + E + +        
Sbjct: 96  ----LKENGK--VIVTGCLGARE-DEIRQVHPNVLGITGPHAYQNVLEHVHQY------- 141

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
                  + F  L + D G        A+L I EGC+  CTFC++P  RG  +SR + ++
Sbjct: 142 -APKPAHNPFTSL-VPDHGVKLTPKHYAYLKISEGCNHRCTFCIIPSMRGDLVSRPVGEI 199

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE-----------KCTFSDLLYSLSEIKG 259
           + EA +L + GV E+ ++ Q+ +A+   G+D +           +     L   L ++  
Sbjct: 200 IGEAERLKNAGVKELLVISQDTSAY---GVDTKHSLGFASGSPVRHNIKALSEELGKMGI 256

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
            VRL Y   +P       + A G +   +PYL +P Q  S R+LK M R   A    + I
Sbjct: 257 WVRLHYVYPYPHVDEIIPLMAEGKV---LPYLDIPFQHASPRVLKMMKRPGQAERTLERI 313

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            + R + P++ I S FIVGFPGET++DF+  +D + +    +   FKYSP  G   + + 
Sbjct: 314 KKWREICPELVIRSTFIVGFPGETEEDFQILLDWLKEAQLDRVGCFKYSPVEGAAANEIE 373

Query: 380 EQVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPW 434
           +Q+ E VK    ER + +Q+++   ++      +G  + VLI++  +E   G+    +P 
Sbjct: 374 DQIPEEVKQDRFERFMLVQQEISAAKLQKR---IGSTMRVLIDEVDEEGAIGRTYADAPE 430

Query: 435 LQSVV-LNSK-NHNIGDIIKVRITDVKISTLYG 465
           +  +V LN + N   G+++ V I       L+G
Sbjct: 431 IDGLVYLNGETNLKPGELVNVVIEHADEYDLWG 463


>gi|150006722|ref|YP_001301465.1| putative Fe-S oxidoreductase [Parabacteroides distasonis ATCC 8503]
 gi|149935146|gb|ABR41843.1| putative Fe-S oxidoreductase [Parabacteroides distasonis ATCC 8503]
          Length = 444

 Score =  177 bits (450), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 124/403 (30%), Positives = 200/403 (49%), Gaps = 22/403 (5%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N  ++  +  +   QG  +V   + AD+ V+NTC + E A +K    + RI   
Sbjct: 16  TLGCKLNFAETSTIGKLLAEQGVRKVRPGEKADICVVNTCSVTELADKKCRQAIRRIG-- 73

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLP---ELLERARFGK 147
                K+     +VV GC AQ + EE+      V++V+G +    +    E LE+   G 
Sbjct: 74  -----KQHPGAFIVVTGCYAQLKPEEVSHIEG-VDLVLGAEQKLEILQYLENLEKKENGG 127

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
            V+ +       F      D   +R R    FL +Q+GCD +C++C +P+ RG   + ++
Sbjct: 128 AVIASQSKDIRSFSPSCSAD---DRTR---HFLKVQDGCDYYCSYCTIPFARGRSRNGTI 181

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
           + +V++A+++   G  EI L G N+  + GK  D    TF DL+ +L E+ G+VR R ++
Sbjct: 182 ASMVEQAQEVARKGGKEIVLTGVNIGDF-GKSTDE---TFIDLIRALDEVDGIVRYRISS 237

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
             P  ++D  I          P+ H+P+QSGSD +L+ M RR+    +R  I++I+ V P
Sbjct: 238 IEPNLITDEAIDFVAHSKRFAPHFHIPLQSGSDAVLQLMRRRYDTALFRHKIEKIKEVMP 297

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
              I  D IVG  GETD+ F      +  +  +Q   F YS R GT    +   VD   K
Sbjct: 298 HAFIGVDVIVGTRGETDEYFEEARQFIGSLDISQLHVFSYSERPGTQALKIDHVVDPKTK 357

Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG 430
             R   L      +  +F +A +GQ + VL E H K+ GK+ G
Sbjct: 358 HARSQQLLDISDRKLHAFYEAHIGQEVNVLFE-HTKKDGKMHG 399


>gi|320355049|ref|YP_004196388.1| 30S ribosomal protein S12P methylthiotransferase [Desulfobulbus
           propionicus DSM 2032]
 gi|320123551|gb|ADW19097.1| SSU ribosomal protein S12P methylthiotransferase [Desulfobulbus
           propionicus DSM 2032]
          Length = 448

 Score =  177 bits (450), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 132/454 (29%), Positives = 219/454 (48%), Gaps = 27/454 (5%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
            ++ S GC  N+ DS  M       GY  V+  D A ++++NTC     A E+    +  
Sbjct: 4   LYIVSLGCPKNLVDSEVMLAALEQSGYAVVDDPDQASVLLINTCGFIRPAVEEAIDTIFE 63

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           +   K     +     +VV GC+ Q  G E+L   P V++ VG   + R+  +LE+    
Sbjct: 64  LAAYKEQNPHQK----LVVTGCMVQRYGSELLNELPEVDLFVGLDDFPRIGTMLEQLPLR 119

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVT---AFLTIQEGCDKFCTFCVVPYTRGIEI 203
            + + T  S    F    +++    R+       A+L I EGCD  C +C++P  RG   
Sbjct: 120 PQCIVT--SGPSTF----LMNNTLPRRISTPFFRAYLKITEGCDNRCAYCMIPSIRGRLR 173

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR+++ ++ EA +L   GV E+ L+ Q++ A+ G+ L G   +   LL +L     +  L
Sbjct: 174 SRAMTDLLLEATRLQQAGVRELALIAQDLTAY-GRDL-GNGTSLVSLLEALLTQTDIPWL 231

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R   ++P  ++D L+    D   L+PYL +P Q  S  +L++MNR +     + +I RIR
Sbjct: 232 RLLYAYPSGITDDLLHLMADQPRLLPYLDIPFQHVSTPVLRAMNRHYDHRALQDLILRIR 291

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
            + PD AI +  +VGFPGET DD    ++ +          F+Y    G+  + + +++ 
Sbjct: 292 RIVPDCAIRTTMLVGFPGETRDDVDLLLEALQTWQLDHVGVFQYQDEEGSRAAKLPDKIS 351

Query: 384 ENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GRS----PWL 435
           E  K  R   ++ +Q  +  Q+       VG++  VL+E   +E   L+ GRS    P +
Sbjct: 352 EEKKEARYQQVMAVQATISAQR---QQRFVGRVEPVLVEGISEESDLLLEGRSRFQAPEI 408

Query: 436 QSVVLNSKNH-NIGDIIKVRITDVKISTLYGELV 468
              V  +  H   GDI+ VRIT+     L GE+V
Sbjct: 409 DGCVYITAGHVTPGDIVPVRITEAHTYDLVGEVV 442


>gi|27379686|ref|NP_771215.1| ribosomal protein S12 methylthiotransferase [Bradyrhizobium
           japonicum USDA 110]
 gi|81737050|sp|Q89LG9|RIMO_BRAJA RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|27352838|dbj|BAC49840.1| blr4575 [Bradyrhizobium japonicum USDA 110]
          Length = 439

 Score =  177 bits (449), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 134/461 (29%), Positives = 216/461 (46%), Gaps = 47/461 (10%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R    S GC   + DS R+     ++GYE     D AD++++NTC   + A ++  S +G
Sbjct: 6   RISFTSLGCPKALVDSERIITRLRAEGYELARKHDGADIVIVNTCGFLDSAKQESLSAIG 65

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                    + E G   V+V GC+  AE E+I +  P V  + GPQ Y  + + + RA  
Sbjct: 66  EA-------MAENGK--VIVTGCMG-AEPEQIEQAYPGVLSITGPQQYESVLDAVHRALP 115

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                  D           +   G        A+L I EGC+  CTFC++P  RG  +SR
Sbjct: 116 PAHNPHLDL----------VPPQGIKLTPRHYAYLKISEGCNNRCTFCIIPKLRGDLVSR 165

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYSL 254
             + V+ EA +L+  GV E+ ++ Q+ +A           W+ + +   +  F DL   L
Sbjct: 166 PANDVLREAERLVGAGVKELLVISQDTSAYGVDLKYAESPWKDRQV---RAKFLDLAREL 222

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
            E+   VRL+Y   +P       +   G    ++PYL +P Q  S  +LK+M R     +
Sbjct: 223 GELGAWVRLQYVYPYPHVDEVIALMTQG---TVLPYLDIPFQHASPEVLKAMKRPAAQDK 279

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
               I R R   PD+A+ S FIVGFPGETD DF   +D +D+    +   FKY P  G  
Sbjct: 280 TLARIKRWREECPDLALRSTFIVGFPGETDADFAYLLDWLDEAEIDRLGCFKYEPVAGAT 339

Query: 375 GSNMLEQVDENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK--EKGKLV 429
            + +   V E VK ER   L+  Q+K+  +++      VG   +++I++ G    +G+  
Sbjct: 340 SNAIANPVPEEVKQERYNALMARQQKISARRLKRK---VGTRQQIIIDEVGPTVARGRSK 396

Query: 430 GRSPWLQ-SVVLNSKNH-NIGDIIKVRITDVKISTLYGELV 468
             +P +  +V L+S+    +G+I+  +I       L+G + 
Sbjct: 397 ADAPEIDGAVYLSSRRPLRVGEIVTAKIERADQYDLHGSVA 437


>gi|160915016|ref|ZP_02077229.1| hypothetical protein EUBDOL_01023 [Eubacterium dolichum DSM 3991]
 gi|158432815|gb|EDP11104.1| hypothetical protein EUBDOL_01023 [Eubacterium dolichum DSM 3991]
          Length = 435

 Score =  177 bits (449), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 127/442 (28%), Positives = 219/442 (49%), Gaps = 21/442 (4%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           F + + GC++N Y+S   E     +GY  V+  + AD+ ++NTC +   AA K    + +
Sbjct: 4   FAIATLGCKVNTYESQGYEAALLERGYTEVSFKEKADIYIINTCAVTNTAASKSRQKIHQ 63

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
              L  +         + V GC  Q+  +++      V+++VG +    L + +E    G
Sbjct: 64  AHALNPT-------ACIAVVGCYVQSNHDQVADIDG-VSILVGSKGKSMLVDQIEAYLQG 115

Query: 147 KRVVDT--DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
           + V +   D      FE L +    +  +    AFL IQ+GC++FC++C++PY RG E S
Sbjct: 116 QSVCEERIDARSISAFEALKVERFEHQTR----AFLKIQDGCNQFCSYCIIPYARGAERS 171

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKGLVRL 263
            +  QV++ A++L++N   EI L G +     G+  +G      DLL  L +E+  L R+
Sbjct: 172 LAEDQVIESAKQLVNNQHLEIVLTGIHT----GRYGNGTGRNLLDLLKRLVAEVPKLRRI 227

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R ++    ++SD LI    +   +  +LH+P+Q+ S+ +L+ M R +T   + + +  IR
Sbjct: 228 RISSIEMNEISDELIAFMKEEPRIARHLHIPLQAASNTVLQRMRRPYTVEWFMERVAYIR 287

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           S   DI+ISSD I GFP E++++F      ++++  +    F YS R  T  + M   +D
Sbjct: 288 SQIADISISSDVITGFPQESEEEFMEGYRNIEEMQLSFLHVFPYSKRDFTDAAKMPGHLD 347

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
              K  R   L +  +E   S+    +GQ I VL EK  + +G L G S     V    +
Sbjct: 348 RKTKKARGAKLAQLSKELYTSYKQRFIGQKISVLFEK--EVEGMLFGHSSEYLEVYAKKE 405

Query: 444 NHNIGDIIKVRITDVKISTLYG 465
              +  +  V I+++K   LYG
Sbjct: 406 AGALHTLCDVLISELKDDVLYG 427


>gi|152999067|ref|YP_001364748.1| ribosomal protein S12 methylthiotransferase [Shewanella baltica
           OS185]
 gi|238066623|sp|A6WIP6|RIMO_SHEB8 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|151363685|gb|ABS06685.1| MiaB-like tRNA modifying enzyme YliG [Shewanella baltica OS185]
          Length = 472

 Score =  177 bits (449), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 138/454 (30%), Positives = 223/454 (49%), Gaps = 42/454 (9%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ DS R+       GYE  NS D+ADL+++NTC   + A E+    L  +R  
Sbjct: 39  SLGCPKNLVDSERILTQLRIDGYEVTNSYDNADLVIVNTCGFIDAAVEES---LDAVREA 95

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               ++E G   V+V GC+   E  +I    P V  + GP +Y  +          K V 
Sbjct: 96  ----LEENGK--VIVTGCLGAKEN-QIREVHPDVLEITGPHSYEAV-----LKHVHKYVP 143

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
             ++   + F  L I   G        A+L I EGCD  CTFC++P  RG   SR    +
Sbjct: 144 KPEH---NPFTSL-IPQTGVKLTPKHYAYLKISEGCDNRCTFCIIPSLRGDLDSRPAGSI 199

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE---------KCTFSDLLYSLSEIKGLV 261
           +DEA++L+++GV EI ++ Q+ +A+ GK   G          K   + L   L ++   V
Sbjct: 200 LDEAKRLVESGVQEILVVSQDTSAY-GKDKGGRTDFWNGMPVKQDITSLARQLGKMGAWV 258

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           RL Y   +P       + A G   +++PYL +P+Q  S RILK M R        + I R
Sbjct: 259 RLHYIYPYPWVDDLIPLMAEG---LILPYLDIPMQHASPRILKMMKRPGRVDRQLEAIQR 315

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
            R + PD+ I S FIVGFPGET++DF+  +D + +    +   FKYS   G   + + E 
Sbjct: 316 WREICPDLVIRSTFIVGFPGETEEDFQILLDFLKEARLDRVGCFKYSEVDGAVANTIAEL 375

Query: 382 VDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPWLQ 436
           + E+VK +   R + +Q ++  ++++     VG+ +++LI+   +E   G+    +P + 
Sbjct: 376 ISEDVKEDRYHRFMEVQAEISAERLA---RFVGRTLDILIDDVDEEGAIGRSFADAPEID 432

Query: 437 SVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468
            +V  +    +  G +++ RIT      L+ E+V
Sbjct: 433 GMVFINGETELEPGMLVRARITHSDEHDLWAEVV 466


>gi|188583573|ref|YP_001927018.1| ribosomal protein S12 methylthiotransferase [Methylobacterium
           populi BJ001]
 gi|238066397|sp|B1ZEV4|RIMO_METPB RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|179347071|gb|ACB82483.1| MiaB-like tRNA modifying enzyme YliG [Methylobacterium populi
           BJ001]
          Length = 448

 Score =  177 bits (449), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 142/465 (30%), Positives = 218/465 (46%), Gaps = 56/465 (12%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
            P+  FV S GC   + DS R+     ++GYE     D AD++++NTC   + A  +   
Sbjct: 15  APRISFV-SLGCPKALVDSERILTHLRAEGYELSRRHDGADVVIVNTCGFLDSAKAESLQ 73

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +G     +N R        V+V GC+  A+ EEI  + P +  V GPQ Y  +   +  
Sbjct: 74  AIGEAMA-ENGR--------VIVTGCMG-AQPEEIREKYPNLLAVTGPQAYESVVAAVHE 123

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           A              D F  L I   G        A+L I EGC+  CTFC++P  RG  
Sbjct: 124 AV---------PPAHDPFLDL-IPPQGVKLTPRHYAYLKISEGCNNRCTFCIIPSLRGDL 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLL 251
           +SR    V+ EA KL+  GV E+ ++ Q+ +A           WR + +   +  F DL 
Sbjct: 174 VSRPAGDVLREAEKLVKAGVKELLVVSQDTSAYGIDTRYATSPWRDREV---RARFYDLA 230

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
             L E+   VRL Y   +P       + A G +   +PYL +P+Q  S  +LK M R   
Sbjct: 231 SELGELGAWVRLHYVYPYPHVDEVIPLMAEGKI---LPYLDMPLQHASPSVLKRMRR--P 285

Query: 312 AYEYRQIIDRIRSVR---PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
             + RQ+ DRIR  R   P++AI S FIVGFPGET+ +F   +D + +    +   F+Y 
Sbjct: 286 GNQERQL-DRIRRWREICPELAIRSTFIVGFPGETEAEFEELLDWIREARLERVGCFEYE 344

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQ----VSFNDACVGQIIEVLIEKHGK- 423
           P  G P +++   V   VKAER    +++  E Q    +    A VG+ ++V+I++ G  
Sbjct: 345 PVKGAPANDLGLLVPPEVKAER----KRRFMEAQAGVSLKLQRAKVGKRLQVIIDEAGPG 400

Query: 424 -EKGKLVGRSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYG 465
             +G+    +P +   V  +    +  GDI+ V+I       L+G
Sbjct: 401 GARGRSKADAPEIDGSVHVASRRPLRPGDIVTVKIERADAYDLHG 445


>gi|83648001|ref|YP_436436.1| 2-methylthioadenine synthetase [Hahella chejuensis KCTC 2396]
 gi|123726293|sp|Q2SBG3|RIMO_HAHCH RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|83636044|gb|ABC32011.1| 2-methylthioadenine synthetase [Hahella chejuensis KCTC 2396]
          Length = 439

 Score =  177 bits (449), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 136/458 (29%), Positives = 219/458 (47%), Gaps = 50/458 (10%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N  DS R+     ++GYE   S +DAD++++NTC   + A ++    +G     
Sbjct: 12  SLGCPKNTVDSERILTQLRTEGYEISASYEDADVVLVNTCGFIDSAVQESLDAIGEA--- 68

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRR-SPIVNVVVGPQTYYRLPELLERARFGKRV 149
               ++E G   V+V GC+   E  +++R   P V  V GP  Y               V
Sbjct: 69  ----LRENGK--VIVTGCLGAKE--DVIREVHPKVLAVSGPHAY-------------TEV 107

Query: 150 VDTDYSVEDKFERLSIV----DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           ++  + V  K E    V    D G        A+L I EGC+  CTFC++P  RG  +SR
Sbjct: 108 MNQVHQVAPKPEYNPFVNLVPDTGVKLTPKHYAYLKISEGCNHRCTFCIIPSFRGDLVSR 167

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYSL 254
            +  V+ EA++L+ NGV E+ ++ Q+ +A           W G+ +   K    +L   L
Sbjct: 168 PIGDVLGEAQRLVKNGVKELLVISQDTSAYGVDTKYRTGFWEGRPV---KTRMKELCDEL 224

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
             +   VRL Y   +P    D +I    D  +L PYL +P Q  S  +LK+M R   A +
Sbjct: 225 GRMGVWVRLHYVYPYPH--VDDVIPLMADGKIL-PYLDIPFQHASPSVLKNMRRPAHAEK 281

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
               I + R   PDI + S FIVGFPGET++DF+  ++ +++    +   FKYSP  G  
Sbjct: 282 VLHRIGKWREQCPDITLRSTFIVGFPGETEEDFQTLLNFLEEAQLDRVGCFKYSPVEGAT 341

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG--KLVGRS 432
            + + + V+E VK ER     +  +    S   A +G+ ++V++++  +E    +    +
Sbjct: 342 ANELPDPVEEVVKQERWERFMEVQQRISASRLQAKIGKRMDVIVDEVVEEGAVCRSKADA 401

Query: 433 PWLQ-SVVLNSKNH-NIGDIIKVRITDVKISTLYGELV 468
           P +   V L+++ H   GD++ V I D     L+G  V
Sbjct: 402 PEIDGQVFLDNQTHLKPGDLVTVEIEDADEYDLWGRPV 439


>gi|319787551|ref|YP_004147026.1| MiaB-like tRNA modifying enzyme YliG [Pseudoxanthomonas suwonensis
           11-1]
 gi|317466063|gb|ADV27795.1| MiaB-like tRNA modifying enzyme YliG [Pseudoxanthomonas suwonensis
           11-1]
          Length = 455

 Score =  177 bits (449), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 140/462 (30%), Positives = 215/462 (46%), Gaps = 46/462 (9%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  FV S GC   + DS R+      +GY+ V + DDAD++V+NTC   + A  +    
Sbjct: 6   PKVGFV-SLGCPKALVDSERILAQLRVEGYDIVPTYDDADVVVVNTCGFIDSAVAESLDA 64

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G   N +N +        V+V GC+ + + E I  + P V  V GPQ Y  + E +  A
Sbjct: 65  IGEAMN-ENGK--------VIVTGCLGK-KSEMIREQYPDVLSVSGPQDYTSVMEAVHAA 114

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
              K          D F  L + D G        A+L I EGC+  C+FC++P  RG  +
Sbjct: 115 LPPKH---------DPFLDL-VPDYGLKLTPHHYAYLKISEGCNHRCSFCIIPSMRGDLV 164

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCT-FSDLL 251
           SR + +V+ EA +L+  GV E+ ++ Q+ +A           WRG+    E  T    L 
Sbjct: 165 SRPVDEVLREAERLVKGGVRELLVVSQDTSAYGVDVRYAPGTWRGR----EYATRMKALC 220

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
             LSE+    RL Y   +P       + A G +   +PYL +P Q  S RILK M R   
Sbjct: 221 EGLSELDAWTRLHYVYPYPHVDDVIPLMAEGKV---LPYLDIPFQHASPRILKLMKRPGA 277

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
             +  + I R R++ P + + S FIVGFPGET+ +F   +D +D+    +  +F YSP  
Sbjct: 278 VDKTLERIQRWRAICPGLTLRSTFIVGFPGETEQEFEELLDFLDEAQLDRVGAFAYSPVE 337

Query: 372 GTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLV 429
           G   + +   V E VK ERL    ++  E   +  +A VG +   L++    E    + +
Sbjct: 338 GASANALPGAVPEEVKQERLARFMERQGEISAARLEAKVGSVQRCLVDFVDGELAIARSM 397

Query: 430 GRSPWLQSVVLNSKNHNI----GDIIKVRITDVKISTLYGEL 467
             +P +   V      +     G+ + VRI       LYGE+
Sbjct: 398 ADAPEIDGTVQIQDGRDAGLQPGEFVDVRIMGSDEHDLYGEV 439


>gi|254717992|ref|ZP_05179803.1| elongator protein 3 [Brucella sp. 83/13]
 gi|265982938|ref|ZP_06095673.1| conserved hypothetical protein [Brucella sp. 83/13]
 gi|306839771|ref|ZP_07472572.1| MiaB-like tRNA modifying enzyme [Brucella sp. NF 2653]
 gi|264661530|gb|EEZ31791.1| conserved hypothetical protein [Brucella sp. 83/13]
 gi|306405126|gb|EFM61404.1| MiaB-like tRNA modifying enzyme [Brucella sp. NF 2653]
          Length = 427

 Score =  177 bits (449), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 129/432 (29%), Positives = 212/432 (49%), Gaps = 34/432 (7%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           ++GC++N Y+S  M+    + G   + ++ D   I+ NTC +  +A  +    + + R  
Sbjct: 7   TFGCRLNTYESEVMKREADAAG---LGTLKDG-AIIFNTCAVTAEAVRQARQAIRKAR-- 60

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ------TYYRLPELLERAR 144
                +E  D  ++V GC AQ E +        V++V+G +      +Y  LP+     +
Sbjct: 61  -----RENPDARIIVTGCAAQTEADNFAAMGE-VDLVLGNEEKLKSNSYRMLPDFGVN-Q 113

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
           F K  V+    V +    +  VD    R R   AF+ +Q GCD  CTFC++PY RG   S
Sbjct: 114 FEKVRVNDIMEVRETASHM--VDAIEGRAR---AFVQVQNGCDHRCTFCIIPYGRGNSRS 168

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
             +  VVD+ ++L+ NG  E+ L G ++ ++ G  L G       +   L+++  L RLR
Sbjct: 169 VPMGAVVDQVKRLVGNGYAEVVLTGVDMTSY-GPDLPGNLRLGKLVKTVLAQVPDLQRLR 227

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
            ++    +  D L++A      LMP+LHL +Q+G D ILK M RRH   +  +    +R+
Sbjct: 228 LSSIDSIEADDDLMEAIASEKRLMPHLHLSLQAGDDMILKRMKRRHLRDDSIRFCQTVRA 287

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           +RPDI   +D I GFP ET++ F+ ++ +V++ G      F YSPR GTP + M  QV  
Sbjct: 288 LRPDIVFGADIIAGFPTETEEMFQNSLKIVEECGLTHLHVFPYSPREGTPAARM-PQVRR 346

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
            +  ER   L+ +         +A  G    +L+EK G      V R+       ++   
Sbjct: 347 EIVKERAARLRAEGDRAYEKHLNALYGTRQRLLVEKEG------VARTEGFTLAAVDQG- 399

Query: 445 HNIGDIIKVRIT 456
            N G+II+  +T
Sbjct: 400 -NAGEIIERIVT 410


>gi|153008261|ref|YP_001369476.1| MiaB-like tRNA modifying enzyme [Ochrobactrum anthropi ATCC 49188]
 gi|151560149|gb|ABS13647.1| MiaB-like tRNA modifying enzyme [Ochrobactrum anthropi ATCC 49188]
          Length = 427

 Score =  177 bits (449), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 125/402 (31%), Positives = 203/402 (50%), Gaps = 30/402 (7%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V ++GC++N Y+S  M+    + G   +  + D   I+ NTC +  +A  +    + + R
Sbjct: 5   VVTFGCRLNTYESEVMKREADAAG---LGELKDG-AIIFNTCAVTAEAVRQARQAIRKAR 60

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ------TYYRLPELLER 142
                  +E  +  ++V GC AQ E +        V++++G +      +Y  LP+    
Sbjct: 61  -------RENPEARIIVTGCAAQTEADNFAAMDE-VDLILGNEEKLKSNSYRMLPDFGVN 112

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            +F K  V+    V +    +  VD    R R   AF+ +Q GCD  CTFC++PY RG  
Sbjct: 113 -QFEKVRVNDIMEVRETASHM--VDAIEGRAR---AFVQVQNGCDHRCTFCIIPYGRGNS 166

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            S  +  VVD+ ++L+ NG  E+ L G ++ ++ G  L G       +   L+++  L R
Sbjct: 167 RSVPMGAVVDQVKRLVGNGYAEVVLTGVDMTSY-GPDLPGSLRLGKLVKTVLNQVPDLQR 225

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LR ++    +  D L+ A  +   LMP+LHL +Q+G D ILK M RRH   +  +  + +
Sbjct: 226 LRLSSIDSIEADDDLMDAIANEKRLMPHLHLSLQAGDDMILKRMKRRHLRDDSIRFCETV 285

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           RS+RPDI   +D I GFP ET+D FR ++ +V++ G +    F YS R GTP + M +  
Sbjct: 286 RSLRPDIVFGADIIAGFPTETEDMFRNSLKIVEECGLSHLHVFPYSAREGTPAARMPQVR 345

Query: 383 DENVK--AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422
            E VK  A RL     +  E+ +    A  G +  +L+EK G
Sbjct: 346 REIVKERAARLRAEGDRAYEKHLG---ALNGTLQRLLVEKEG 384


>gi|144898728|emb|CAM75592.1| conserved hypothetical protein [Magnetospirillum gryphiswaldense
           MSR-1]
          Length = 470

 Score =  177 bits (448), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 128/460 (27%), Positives = 223/460 (48%), Gaps = 49/460 (10%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           + S GC   + DS R+     ++GY+  +S D AD++V+NTC   + A  +    +G   
Sbjct: 32  IVSLGCAKALVDSERILTRLRAEGYDISDSYDGADVVVVNTCGFLDSARAESLEAIGEAM 91

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRS-PIVNVVVGPQTYYRLPELLERARFGK 147
           N +N R        V+V GC+   E  +++R++ P V  V GP  Y ++ + + +A    
Sbjct: 92  N-ENGR--------VIVTGCMGGEE--DVIRKAHPDVLAVTGPHQYQQVVDAVHQAA--- 137

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
                    E       +   G +      A+L I EGC+  C+FC++P  RG   SR +
Sbjct: 138 -------PPESSPLHSLVPPEGLHLTPSHYAYLKISEGCNHRCSFCIIPGIRGDLASRPV 190

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYSLSE 256
             V++EA +L   G+ EI ++ Q+  A           W G+ +   K   +++  +L +
Sbjct: 191 GDVLEEAERLAMAGIKEILVISQDTGAYGLDIKYAESPWHGRAV---KARLTEMAEALGD 247

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           +    RL Y   +P       + A G +   +PYL +P Q  S ++LK+M R     ++ 
Sbjct: 248 LGVWTRLHYVYPYPHVDEVIPLMAAGKI---LPYLDIPFQHASPKVLKAMRR---PADHE 301

Query: 317 QIIDRI---RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
           ++++RI   R + PD+AI S FIVGFPGET++DF   +D + K    +   FKY    G 
Sbjct: 302 RLLERITGWREICPDLAIRSTFIVGFPGETEEDFEFLLDWLQKARIDRVGCFKYENVAGA 361

Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGR 431
             +++ + VDE+VK ER   L +  R+     +   +G+ IEV+I++  ++   G+    
Sbjct: 362 AANHLADHVDEDVKEERYNRLMEVARQISDEISKGKIGKTIEVIIDEVDEDGAYGRSWAD 421

Query: 432 SPWLQSVVL--NSKNHNIGDIIKVRITDVKISTLYGELVV 469
           SP +   V   +  +   GD++ V +   +   L+G +V 
Sbjct: 422 SPEVDGCVYINHETDAQPGDVVMVEVEHAEDFDLWGRIVA 461


>gi|316969966|gb|EFV53984.1| putative radical SAM domain protein [Trichinella spiralis]
          Length = 405

 Score =  177 bits (448), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 121/400 (30%), Positives = 194/400 (48%), Gaps = 62/400 (15%)

Query: 107 GCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIV 166
           GC+A+           +V+++ GP  Y  LP L+     G++ V+T +S ++ +  +  V
Sbjct: 16  GCMAKRSAHPSGSEVGLVDLIAGPDAYRDLPRLIASCETGQQAVNTIFSYDETYADIHPV 75

Query: 167 DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEIT 226
                  R  ++  +I  GC   C++CVVP+TRG E SR               GV E+T
Sbjct: 76  -------RRDSSSQSIMRGCSNMCSYCVVPFTRGFEKSRP--------------GVKEVT 114

Query: 227 LLGQNVNAW-----RGKGLDGE--------------KC--TFSDLLYSLSEIKGLVRLRY 265
           LLGQNVN++         +DG+              KC   F++LL  LS I   VR+R+
Sbjct: 115 LLGQNVNSYCDADPSSTIVDGQLYLASGFVNVVKRKKCGIRFAELLQRLSNINSNVRIRF 174

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
           T+ HP+D  D ++    +   +   +HLP QSGS+ +L+ M+R +T   Y  ++++I+  
Sbjct: 175 TSPHPKDFPDEVLDVIRNHPNICNSVHLPAQSGSNNVLQRMHRGYTVEAYMNLVEKIKDK 234

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQVDE 384
            P + ++SDFI GF GETD+D   T+ L+  + Y+  ++F YS R  T       + V  
Sbjct: 235 IPGVTLTSDFISGFCGETDEDHEQTVQLIKNVQYSYCYTFVYSMRERTKAHRRYCDDVPI 294

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL-VGRSP------WLQS 437
           +VK  R   LQ + R+  +  N   +G+ + VL+EK  K   +  +GRS       + +S
Sbjct: 295 DVKKARSQQLQNEFRKGALILNRKFIGKTLTVLVEKESKRSTEFWMGRSDGNLKIIFPKS 354

Query: 438 VVLN------------SKNHNIGDIIKVRITDVKISTLYG 465
            V+N             +N  IGD + V I D     L G
Sbjct: 355 SVVNCFDSSSSSSSIHQRNIQIGDFVDVDINDASSEVLKG 394


>gi|218781077|ref|YP_002432395.1| MiaB-like tRNA modifying enzyme YliG [Desulfatibacillum
           alkenivorans AK-01]
 gi|218762461|gb|ACL04927.1| MiaB-like tRNA modifying enzyme YliG [Desulfatibacillum
           alkenivorans AK-01]
          Length = 451

 Score =  177 bits (448), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 116/366 (31%), Positives = 184/366 (50%), Gaps = 21/366 (5%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ DS  +     S G+       +A+ I++N+C     A ++    +  + + 
Sbjct: 15  SLGCVRNLVDSELILGALASGGFALTEDPAEAETIIINSCGFVRAAVDETIDVVLEMAHY 74

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR-FGKRV 149
           K    +EG    +V+ GC+AQ  G+E+    P +++VVGP  +  + ELL R   F  +V
Sbjct: 75  K----EEGRCQRLVLCGCMAQRYGKELEEALPELDMVVGPGAHKDIVELLRRPTGFICQV 130

Query: 150 VDTDYSV--EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
            D   +   +  F R+              A++ I EGC   CTFC++P  RG   SR L
Sbjct: 131 PDPSTAPLQQASFPRICSTPH--------MAYIKISEGCPDRCTFCMIPQLRGAWRSRPL 182

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK---CTFSDLLYSLSEIKGLVRLR 264
             +V+EA  LI  G  EI L+ Q+  A+   GLD +K    +   LL SL  ++G  R R
Sbjct: 183 DDIVEEAGNLIQWGAKEIILVAQDTTAY---GLDFDKQNRTSLDQLLSSLCRLEGETRFR 239

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +   HP  ++D L++       +  Y  LPVQ GSDRILK M R++T  E  ++ ++IR+
Sbjct: 240 FLYGHPNRVTDALLETAASQPRVCSYFDLPVQHGSDRILKMMGRKNTRDEMLRLFEKIRA 299

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             PD+A+ +  +VGFPGET++DF   ++ V +  +     F YS     P   + + V E
Sbjct: 300 TVPDVALRTTALVGFPGETEEDFNQLVEFVQEARFDHLGVFAYSDAEEIPSHRLPDHVPE 359

Query: 385 NVKAER 390
           +   +R
Sbjct: 360 DTAIKR 365


>gi|15669058|ref|NP_247862.1| hypothetical protein MJ_0867 [Methanocaldococcus jannaschii DSM
           2661]
 gi|2501543|sp|Q58277|Y867_METJA RecName: Full=Putative methylthiotransferase MJ0867
 gi|1591550|gb|AAB98872.1| conserved hypothetical protein [Methanocaldococcus jannaschii DSM
           2661]
          Length = 427

 Score =  177 bits (448), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 131/457 (28%), Positives = 234/457 (51%), Gaps = 43/457 (9%)

Query: 20  QCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEK 79
           Q ++  R +V+ YGC +N  D+  +++     G+E VN++++AD+ ++NTC +R +   +
Sbjct: 7   QVVMDMRVYVEGYGCVLNTADTEIIKNSLKKHGFEVVNNLEEADIAIINTCVVRLETENR 66

Query: 80  VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL 139
           +   +  ++NL            VVVAGC+ +A     L+      + + P+  ++  E+
Sbjct: 67  MIYRINELKNLGKE---------VVVAGCLPKA-----LKNKVKGFLHIYPREAHKAGEI 112

Query: 140 LERARFGKRVVDTDYS---VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
           L      K  V+  Y    +E+   +       Y +   +T  L I EGC   C++C+V 
Sbjct: 113 L------KNYVEKHYRMPYIEEDINKTLYKKLDYLKPSLITP-LPICEGCIGNCSYCIVK 165

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLS 255
             RG  IS    ++V++A++LI+ G   + +  Q+   +   G D G+    ++LL  L+
Sbjct: 166 IARGGLISYPREKIVNKAKELINKGAKCLLITAQDTACY---GFDIGD--NLANLLNELT 220

Query: 256 EIKGLVRLRYTTSHPRDMS---DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
           +IKG   +R    H ++     D LI+ + +  V   +LHLP+QSG D ILK M R +T 
Sbjct: 221 QIKGEFIMRVGMMHAKNAELILDELIEVYQNEKV-GKFLHLPLQSGDDEILKRMKRGYTV 279

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
            E++ I++  R    ++  ++D IVGFPGET++ F+ T++++ ++        KYS R G
Sbjct: 280 DEFKDIVNEFRRKIKNLCFTTDIIVGFPGETEEQFQNTLEVLRELKPDYIHGAKYSQRKG 339

Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS 432
           T  + M +Q+D  ++  R   L K  RE     N   +G+ ++VL+   GK      G +
Sbjct: 340 TEAAKM-KQIDTKIRKRRSEILDKLRRELSYLNNKKYIGKAMKVLVLDEGK------GYT 392

Query: 433 PWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
              +  V+  +   +G+  KV+ITD K   L GEL++
Sbjct: 393 DNFK--VVKFEGGEVGEFRKVKITDAKTFGLKGELIL 427


>gi|228471734|ref|ZP_04056507.1| conserved hypothetical protein [Capnocytophaga gingivalis ATCC
           33624]
 gi|228276887|gb|EEK15582.1| conserved hypothetical protein [Capnocytophaga gingivalis ATCC
           33624]
          Length = 469

 Score =  177 bits (448), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 136/457 (29%), Positives = 220/457 (48%), Gaps = 35/457 (7%)

Query: 20  QCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC-HIREKAAE 78
           + I   +  V + GC  NVYDS  +     + G E V+  D  +++V+NTC  I     E
Sbjct: 13  KSIKQNKINVVTLGCSKNVYDSEVLMGQLKASGKEVVHE-DKGNIVVINTCGFINNAKEE 71

Query: 79  KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPE 138
            + + L  I+     + +EG    V V GC+++    ++ +  P V+   G      LP 
Sbjct: 72  SINTILEYIQ-----KKEEGLVDKVFVMGCLSERYKPDLQKEIPDVDQYFGTT---ELPA 123

Query: 139 LLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
           LL       +V+  DY  E   ERL+     Y       A+L + EGCD+ C+FC +P  
Sbjct: 124 LL-------KVLGADYKHELIGERLTTTPKNY-------AYLKVSEGCDRPCSFCAIPIM 169

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258
           RG   S S+  +V EA KL   GV E+ L+ Q+V  + G  L GE+   +DLL +L++++
Sbjct: 170 RGSHKSTSIENLVIEAEKLAKKGVKELILIAQDV-TYYGLDLYGER-KLADLLRALAKVE 227

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           G+  +R   + P      ++    +   +  YL +P+Q  +D ILKSM R  T  +  Q+
Sbjct: 228 GIEWIRIHYAFPTGFPKDVLTVMKEEPKICKYLDIPLQHIADPILKSMKRGTTKAKTTQL 287

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           ++  R   P+IAI +  IVG+P ET++DF    + V ++ + +   F YS    T    +
Sbjct: 288 LEDFRKAMPEIAIRTTLIVGYPNETEEDFEELKEFVRQMRFERLGCFTYSHEENTAAYEL 347

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPW---- 434
            + + E VK  R   + +   +     N A VG+    LI++  KE    VGR+ +    
Sbjct: 348 EDNIPEEVKQRRAAEIMEIQSQISWELNQAKVGKTFRCLIDR--KEGQYFVGRTEYDSPD 405

Query: 435 -LQSVVLNSKNH--NIGDIIKVRITDVKISTLYGELV 468
               V++++  H   IGD   + IT+     LYGE V
Sbjct: 406 VDNEVLIDAAKHYVKIGDFADILITEATDFDLYGEPV 442


>gi|150025205|ref|YP_001296031.1| hypothetical protein FP1133 [Flavobacterium psychrophilum JIP02/86]
 gi|149771746|emb|CAL43220.1| Protein of unknown function [Flavobacterium psychrophilum JIP02/86]
          Length = 442

 Score =  177 bits (448), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 124/420 (29%), Positives = 204/420 (48%), Gaps = 25/420 (5%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N  ++  +   F  +G++RV+  + AD+ V+NTC + E A ++    + +   L
Sbjct: 11  TLGCKLNFSETSTIARNFQDEGFDRVDFEEIADMYVINTCSVTENADKQFKQIVKKAMKL 70

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
            +          +   GC AQ + EE L     V++V+G    +++ + +       R  
Sbjct: 71  NDK-------AFIAAVGCYAQLKPEE-LAAVDGVDLVLGATEKFKITDYINDLSKNDR-- 120

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
              +S E   E      G Y+      AFL +Q+GCD  CT+C +P  RGI  S +L  V
Sbjct: 121 SEVHSCE--IEEADFYVGSYSIGDRTRAFLKVQDGCDYKCTYCTIPLARGISRSDALENV 178

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK---CTFSDLLYSLSEIKGLVRLRYTT 267
           +  A  +   G+ EI L G N+  + GKG  G K    TF DL+ +L ++KG+ RLR ++
Sbjct: 179 LKNASDISKQGIKEIVLTGVNIGDY-GKGEFGNKKHEHTFLDLVQALDKVKGIERLRISS 237

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
             P  + +  I         +P+ H+P+QSGS+ IL  M RR+    Y   +  IR V P
Sbjct: 238 IEPNLLKNETIDFVSKSRTFVPHFHIPLQSGSNEILGKMKRRYQREVYTDRVANIRQVMP 297

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
              I  D IVGFPGET+  F  + + ++++  +    F YS R  T  + M   V  NV+
Sbjct: 298 HACIGVDIIVGFPGETEAHFLESYNFLNEMDISYLHVFTYSERDNTEAATMDGVVPMNVR 357

Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG--------RSPWLQSVV 439
            +R   L+    +++ +F ++ +G    VL E   KE G + G        ++PW   +V
Sbjct: 358 NKRSKMLRGLSVKKRRAFYESQLGTNRTVLFESENKE-GYIHGFTENYIKVKTPWNPELV 416


>gi|99082650|ref|YP_614804.1| MiaB-like tRNA modifying enzyme [Ruegeria sp. TM1040]
 gi|99038930|gb|ABF65542.1| MiaB-like tRNA modifying enzyme [Ruegeria sp. TM1040]
          Length = 421

 Score =  177 bits (448), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 116/380 (30%), Positives = 189/380 (49%), Gaps = 28/380 (7%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  M+++    G E          +V+NTC +  +A  K    + ++R  
Sbjct: 9   TLGCRLNAYETEAMKELSRQAGLE--------GAVVVNTCAVTAEAVRKARQEIRKLR-- 58

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVV-----VGPQTYYRLPELLERARF 145
                ++  D  ++V GC AQ E E     S +  V+     + P+T+ R+ + L+    
Sbjct: 59  -----RDHPDAPIIVTGCAAQTEPETFAAMSEVTQVIGNTEKMQPETWQRMAKGLDFIGA 113

Query: 146 GKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            ++V VD   SV +    L  +DG   R R   A++ +Q GCD  CTFC++PY RG   S
Sbjct: 114 TEKVLVDDIMSVTETASHL--IDGFGTRSR---AYVQVQNGCDHRCTFCIIPYGRGNSRS 168

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
                VVD+ ++L+D G  E+ L G ++ +W G  L         ++  L  +  L RLR
Sbjct: 169 VPAGVVVDQIKRLVDKGYNEVVLTGVDLTSW-GADLPASPKLGDLVMRILKLVPDLPRLR 227

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
            ++    ++ + L++A      LMP+LHL +Q G D ILK M RRH   +  +  +  R 
Sbjct: 228 ISSIDSIEVDENLMQAIATEPRLMPHLHLSLQHGDDLILKRMKRRHLRDDAIRFTEEARK 287

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           +RP +   +D I GFP ET+  F  ++ LV +        F YS R GTP + +  QV+ 
Sbjct: 288 LRPQMTFGADIIAGFPTETESHFENSLKLVTECDLTWLHVFPYSKREGTPAAKIPSQVNG 347

Query: 385 NVKAERLLCLQKKLREQQVS 404
           NV  ER   L + + E Q++
Sbjct: 348 NVIKERAARL-RAIGEAQIA 366


>gi|300774217|ref|ZP_07084084.1| 2-methylthioadenine synthetase [Sphingobacterium spiritivorum ATCC
           33861]
 gi|300758896|gb|EFK55725.1| 2-methylthioadenine synthetase [Sphingobacterium spiritivorum ATCC
           33861]
          Length = 447

 Score =  177 bits (448), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 122/440 (27%), Positives = 225/440 (51%), Gaps = 16/440 (3%)

Query: 20  QCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEK 79
           + I+ ++    + GC++N  ++  +  +F   GYE       AD+ V+NTC + + A +K
Sbjct: 5   KIIMNKKVAFYTLGCKLNFSETSSIGRIFKDAGYETTAFNSQADVYVINTCSVTDHADKK 64

Query: 80  VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL 139
                   R +    +K   +  + + GC AQ + +EI    P V++V+G    + + E 
Sbjct: 65  C-------RKVVKEALKYSPNAYITIVGCYAQLKPQEIAN-IPGVDMVLGAAEKFNIIEH 116

Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           +      ++ +  +  +++  + +S    G +R R    FL +Q+GCD  CTFC +P  R
Sbjct: 117 INDLTKQEKTIVHNAPIDETNQFVSAYSIG-DRTR---TFLKVQDGCDYSCTFCTIPLAR 172

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT-FSDLLYSLSEIK 258
           G   S  +  +V +A ++  +GV EI L G N+  +  +  DGE+   F DL+ +L E++
Sbjct: 173 GASRSGKIEDIVRQAEEIAASGVKEIVLTGVNIGDFGVR--DGERQDRFLDLVKALDEVE 230

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           G+ R+R ++  P  +++ +I+        +P+ H+P+QSG+++IL  M RR+    Y + 
Sbjct: 231 GIDRIRISSIEPNLLANDIIEFVAQSKRFVPHFHMPLQSGNNKILGMMRRRYKRELYAER 290

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           + +I+S+ PD  I  D IVGFPGET +DF  T + ++++  +    F YS R  T  + M
Sbjct: 291 VAKIKSLMPDCCIGVDVIVGFPGETREDFLDTYNFLNEMDISYLHVFTYSERENTIAAQM 350

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSV 438
              V    +++R   L     +++ +F +  + +I +VL E   KE G + G S     V
Sbjct: 351 EGAVPGAQRSDRSKMLHILSEKKRRAFYENQLSKIGDVLFESDEKE-GFMHGFSKNYVKV 409

Query: 439 VLNSKNHNIGDIIKVRITDV 458
                   + ++I+VR T +
Sbjct: 410 RTAYDPLLVNEVIQVRFTSI 429


>gi|21231995|ref|NP_637912.1| hypothetical protein XCC2564 [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66767878|ref|YP_242640.1| ribosomal protein S12 methylthiotransferase [Xanthomonas campestris
           pv. campestris str. 8004]
 gi|81306145|sp|Q4UWF3|RIMO_XANC8 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|81793516|sp|Q8P7P7|RIMO_XANCP RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|21113730|gb|AAM41836.1| conserved hypothetical protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66573210|gb|AAY48620.1| conserved hypothetical protein [Xanthomonas campestris pv.
           campestris str. 8004]
          Length = 457

 Score =  177 bits (448), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 138/460 (30%), Positives = 215/460 (46%), Gaps = 44/460 (9%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  FV S GC   + DS R+      +GY+ V S D AD++V+NTC   + A  +    
Sbjct: 6   PKVGFV-SLGCPKALVDSERILTQLRVEGYDIVPSYDAADVVVVNTCGFIDSAVTESLDA 64

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G   N             V+V GC+ +   E+I    P V  V GPQ Y  + E +  A
Sbjct: 65  IGEAMNANGK---------VIVTGCLGK-RPEQIREAYPQVLAVSGPQDYQSVMEAVHAA 114

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
              +          D F  L + D G        A+L I EGC+  C+FC++P  RG   
Sbjct: 115 LPPRH---------DPFVDL-VPDYGIKLTPRHYAYLKISEGCNHRCSFCIIPSMRGDLA 164

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS---------L 254
           SR + +V+ EA +L+  GV E+ ++ Q+ +A+ G  L   +  + D +Y          L
Sbjct: 165 SRPVDEVLREAERLVRGGVKELLVVSQDTSAY-GVDLKYAERPWRDRMYQTRMKALCEGL 223

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
           SE+    RL Y   +P       + A G L   +PYL +P Q  S RILK M R     +
Sbjct: 224 SELGVWTRLHYVYPYPHVDDVIPLMAEGKL---LPYLDIPFQHASPRILKLMKRPGAVEK 280

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
             + + R +++ P+I + S FIVGFPGETD +F A ++ +D+    +  +F YSP  G  
Sbjct: 281 TLERVQRWKAMCPEITVRSTFIVGFPGETDAEFEALLEFLDQAQLDRVGAFAYSPVEGAS 340

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS-- 432
            + + + V E +K ERL     +  E   +  +A +G + + L++    E    V RS  
Sbjct: 341 ANALPDPVPEELKQERLARFMARQAEISAARLEAKIGSVQQCLVDL--IEDDIAVARSRA 398

Query: 433 --PWLQSVVL----NSKNHNIGDIIKVRITDVKISTLYGE 466
             P +  +V           +GD++ V ITD     L+G+
Sbjct: 399 DAPEIDGLVHIQNGGELKLKVGDLVDVEITDSDEHDLFGD 438


>gi|160873660|ref|YP_001552976.1| ribosomal protein S12 methylthiotransferase [Shewanella baltica
           OS195]
 gi|238066598|sp|A9KZF7|RIMO_SHEB9 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|160859182|gb|ABX47716.1| MiaB-like tRNA modifying enzyme YliG [Shewanella baltica OS195]
 gi|315265891|gb|ADT92744.1| MiaB-like tRNA modifying enzyme YliG [Shewanella baltica OS678]
          Length = 472

 Score =  177 bits (448), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 139/454 (30%), Positives = 223/454 (49%), Gaps = 42/454 (9%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ DS R+       GYE  NS D+ADL+++NTC   + A E+    L  +R  
Sbjct: 39  SLGCPKNLVDSERILTQLRIDGYEVTNSYDNADLVIVNTCGFIDAAVEES---LDAVREA 95

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               ++E G   V+V GC+   E  +I    P V  + GP +Y  +          K V 
Sbjct: 96  ----LEENGK--VIVTGCLGAKEN-QIREVHPDVLEITGPHSYEAV-----LKHVHKYVP 143

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
             ++   + F  L I   G        A+L I EGCD  CTFC++P  RG   SR    +
Sbjct: 144 KPEH---NPFTSL-IPQTGVKLTPKHYAYLKISEGCDNRCTFCIIPSLRGDLDSRPAGSI 199

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE---------KCTFSDLLYSLSEIKGLV 261
           +DEA++L+++GV EI ++ Q+ +A+ GK   G          K   + L   L ++   V
Sbjct: 200 LDEAKRLVESGVQEILVVSQDTSAY-GKDKGGRTDFWNGMPVKQDITSLARQLGKMGAWV 258

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           RL Y   +P    D LI    +  +++PYL +P+Q  S RILK M R        + I R
Sbjct: 259 RLHYIYPYP--WVDDLIPLMAE-GLILPYLDIPMQHASPRILKMMKRPGRVDRQLEAIQR 315

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
            R + PD+ I S FIVGFPGET++DF+  +D + +    +   FKYS   G   + + E 
Sbjct: 316 WREICPDLVIRSTFIVGFPGETEEDFQILLDFLKEARLDRVGCFKYSEVDGAVANTIAEL 375

Query: 382 VDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPWLQ 436
           + E VK +   R + +Q ++  ++++     VG+ +++LI+   +E   G+    +P + 
Sbjct: 376 ISEEVKEDRYHRFMEVQAEISAERLA---RFVGRTLDILIDDVDEEGAIGRSFADAPEID 432

Query: 437 SVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468
            +V  +    +  G +++ RIT      L+ E+V
Sbjct: 433 GMVFINGETELEPGMLVRARITHSDEHDLWAEVV 466


>gi|146303440|ref|YP_001190756.1| RNA modification protein [Metallosphaera sedula DSM 5348]
 gi|145701690|gb|ABP94832.1| RNA modification enzyme, MiaB family [Metallosphaera sedula DSM
           5348]
          Length = 418

 Score =  177 bits (448), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 136/448 (30%), Positives = 231/448 (51%), Gaps = 36/448 (8%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R + ++YGC +N  D+  M  +   + +E VNS + AD++V+NTC +R +  EK+     
Sbjct: 2   RIYFETYGCALNKGDTYSMMTLLKGRNHEIVNSEEQADVLVINTCAVRMETEEKMKK--- 58

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           RI  L  +  K      +VVAGC+A AE   ++  +P  + ++GPQ+   + ++++    
Sbjct: 59  RILELSKTGKK------LVVAGCLAGAEPGLVMSLAP-QSSLIGPQS---IGDVVKAVES 108

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            +R+V          E  S++   +    G+ + + I +GC   C FC+    R    S 
Sbjct: 109 RERIVSL------HGELPSVLPSVFE---GLISVIPIADGCAGSCNFCITKLARKELRSY 159

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLR 264
               +V+ ARK I+ G  EI L GQ+  A+   GLD G     +DL+  +S ++G   +R
Sbjct: 160 PPRMIVETARKAIEKGAKEIELTGQDTAAY---GLDLGRDIRLADLVGEVSSLEGDFMVR 216

Query: 265 YTTSHP----RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
                P    R + D L     D   +  + HLPVQSG+D++L++MNR++T  E+R+I+ 
Sbjct: 217 VGMMTPELAMRQLDDLL--DAWDNPKVYKFFHLPVQSGNDQVLRAMNRKYTLDEFREIVR 274

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
            IR   P + I++D IVG PGE ++ F  T++L+ ++ + +     YS R  T  S M+ 
Sbjct: 275 EIRKRFPLVNITTDIIVGHPGEDENAFEDTLNLMKELRFERIHIAMYSLRPNT-RSAMMT 333

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440
           QV   +K ERL        E     +   VG+ ++VL+ ++GK+  K +GR+  L  + +
Sbjct: 334 QVPGPIKKERLKRAVTLYEELSREIHREYVGRKMKVLVLENGKDNTK-IGRT--LNYIPV 390

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
             K+ ++G   +  ITD     L G +V
Sbjct: 391 IVKDADLGKWYEAEITDSSFFDLRGSIV 418


>gi|319898920|ref|YP_004159013.1| enzyme [Bartonella clarridgeiae 73]
 gi|319402884|emb|CBI76435.1| putative enzyme [Bartonella clarridgeiae 73]
          Length = 437

 Score =  177 bits (448), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 145/465 (31%), Positives = 218/465 (46%), Gaps = 47/465 (10%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           +VP+  FV S GC   + DS R+     S+GYE  N    ADL+++NTC           
Sbjct: 2   VVPRISFV-SLGCPKALVDSERIITRLRSEGYEISNKHQGADLVIVNTC----------- 49

Query: 82  SFLGRIRNLKNSRIKEG--GDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL 139
            FL   RN   + I E    +  V+V GC+  AE   IL+  P V  + GPQ Y  + + 
Sbjct: 50  GFLDSARNESLANIDEALKNNGKVIVTGCLG-AEPNVILQAYPNVIAITGPQDYESVIQA 108

Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           +  A            V D F  L    G     R   A+L I EGC   C+FC++P  R
Sbjct: 109 VHTAV---------PPVHDPFIDLVPPQGIRLTPRHY-AYLKISEGCSNRCSFCIIPTLR 158

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFS 248
           G   S+ +  V+ EA KL+  GV EI ++ Q+  A           W+ + +   K  F 
Sbjct: 159 GNLTSQPIGDVLREAEKLVQAGVKEILVISQDTGAYGIDIKYAESIWQNRVI---KTKFL 215

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
           DL   L E+   VR+ Y   +P       + A G    ++PYL +P Q  S  +L++M R
Sbjct: 216 DLCRELGEMGIWVRIHYVYPYPHIDQAVELMAAGK---ILPYLDIPFQHASPTVLRNMKR 272

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
                +  + I++ R + PD+ + S FIVGFPGET++DF   ++ +++    +A  FKY 
Sbjct: 273 PAHIEKTNRRIEKWREICPDLTLRSTFIVGFPGETNEDFNMLLEWLEEAKIERAGCFKYE 332

Query: 369 PRLGTPGSNM-LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGK-EK 425
              G   +++ LE + E VK  R      K ++         +G+ ++VLI E  GK  K
Sbjct: 333 AVKGAVANDLGLENIPEEVKENRWHRFMIKQQKISADLLKKKIGKRLQVLIDETQGKIAK 392

Query: 426 GKLVGRSPWLQSVVLNS--KNHNIGDIIKVRITDVKISTLYGELV 468
           G+    SP +  VV  S  K+  IG+ + V+I       LYG +V
Sbjct: 393 GRSKYDSPEIDGVVHISSRKSLRIGEFVTVKIEQSDSYDLYGTVV 437


>gi|238055328|sp|B0RR62|RIMO_XANCB RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
          Length = 457

 Score =  177 bits (448), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 138/460 (30%), Positives = 215/460 (46%), Gaps = 44/460 (9%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  FV S GC   + DS R+      +GY+ V S D AD++V+NTC   + A  +    
Sbjct: 6   PKVGFV-SLGCPKALVDSERILTQLRVEGYDIVPSYDAADVVVVNTCGFIDSAVTESLDA 64

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G   N             V+V GC+ +   E+I    P V  V GPQ Y  + E +  A
Sbjct: 65  IGEAMNANGK---------VIVTGCLGK-RPEQIREAYPQVLAVSGPQDYQSVMEAVHAA 114

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
              +          D F  L + D G        A+L I EGC+  C+FC++P  RG   
Sbjct: 115 LPPRH---------DPFVDL-VPDYGIKLTPRHYAYLKISEGCNHRCSFCIIPSMRGDLA 164

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS---------L 254
           SR + +V+ EA +L+  GV E+ ++ Q+ +A+ G  L   +  + D +Y          L
Sbjct: 165 SRPVDEVLREAERLVRGGVKELLVVSQDTSAY-GVDLKYAERPWRDRMYQTRMKALCEGL 223

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
           SE+    RL Y   +P       + A G L   +PYL +P Q  S RILK M R     +
Sbjct: 224 SELGVWTRLHYVYPYPHVDDVIPLMAEGKL---LPYLDIPFQHASPRILKLMKRPGAVEK 280

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
             + + R +++ P+I + S FIVGFPGETD +F A ++ +D+    +  +F YSP  G  
Sbjct: 281 TLERVQRWKAMCPEITVRSTFIVGFPGETDAEFEALLEFLDQAQLDRVGAFAYSPVEGAS 340

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS-- 432
            + + + V E +K ERL     +  E   +  +A +G + + L++    E    V RS  
Sbjct: 341 ANALPDPVPEELKQERLARFMARQAEISAARLEAKIGTVQQCLVDL--IEDDIAVARSRA 398

Query: 433 --PWLQSVVL----NSKNHNIGDIIKVRITDVKISTLYGE 466
             P +  +V           +GD++ V ITD     L+G+
Sbjct: 399 DAPEIDGLVHIQNGGELKLKVGDLVDVEITDSDEHDLFGD 438


>gi|90421124|ref|ZP_01229026.1| conserved hypothetical protein [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90334616|gb|EAS48396.1| conserved hypothetical protein [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 440

 Score =  177 bits (448), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 125/397 (31%), Positives = 185/397 (46%), Gaps = 26/397 (6%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S+GC++N Y++  M+    + G +     D    IV NTC +  +A  +    + R R  
Sbjct: 7   SFGCRLNTYEAEIMKREAVAAGLD----ADPRGAIVFNTCAVTSEAVRQARKQIRRAR-- 60

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG------PQTYYRLPELLERAR 144
                +E  +  +VV GC AQ E          V+ V+G         Y  LP+    A 
Sbjct: 61  -----RENPEARIVVTGCAAQTEPGRFAEMGE-VDAVLGNDEKLTASAYRALPDFGVAAE 114

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
              RV D     E     +  ++G   R R   A + +Q GCD  CTFCV+P+ RG   S
Sbjct: 115 EKVRVNDIMSVTETAGHMVDAIEG---RAR---AIVQVQNGCDHRCTFCVIPFGRGNSRS 168

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
             +   VD+ ++L+  G  E+ L G ++ +W G  L G       +   L  +  L RLR
Sbjct: 169 VPMGAAVDQVKRLVAAGYNEVVLSGVDMTSW-GADLPGAPKLGQLVQAILRHVPDLARLR 227

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
            ++    +    LI+A G    LMP+LHL +Q+G D ILK M RRH+  +       IR+
Sbjct: 228 LSSIDSVEADPALIEAIGSETRLMPHLHLSLQAGDDMILKRMKRRHSRDDAIGFCTDIRA 287

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
            RPDI   +D I GFP ETD  F  +M LV+  G      F +SPR GTP + M +   E
Sbjct: 288 ARPDIVYGADIIAGFPTETDAMFENSMKLVEDCGLTHLHVFPFSPREGTPAARMPQLPRE 347

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKH 421
            VK +R   L+ +      +   + VG    VL+E++
Sbjct: 348 VVK-DRATALRARGETAHRAHLASLVGTRQSVLVERN 383


>gi|330444543|ref|YP_004377529.1| MiaB-like tRNA modifying protein YliG [Chlamydophila pecorum E58]
 gi|328807653|gb|AEB41826.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Chlamydophila
           pecorum E58]
          Length = 461

 Score =  177 bits (448), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 119/420 (28%), Positives = 202/420 (48%), Gaps = 25/420 (5%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ DS  M  +    GYE  + + +AD ++LNTC   + A ++  ++L R+   
Sbjct: 24  SLGCSRNLVDSEVMLGILLKAGYEATDQLANADYLILNTCAFLKAARDEGKAYLQRLIQE 83

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
           K    K      +++ GC+      E+    P ++ ++G      + E +E    G+ + 
Sbjct: 84  KKKGAK------IILTGCMVSKHKSELEPWLPYIHYLLGSGDVEHILEAIESKEKGESIS 137

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
              Y    +  R       Y       A+L + EGC K C FC++P  +G   S+ + QV
Sbjct: 138 AKSYLEIGEVPRKLSTPKHY-------AYLKVSEGCKKQCAFCIIPAIKGKLRSKPVEQV 190

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI---KGLVRLRYTT 267
           + E R L+ +G+ EI L+ Q++  + GK    ++   S L Y L EI    G   LR   
Sbjct: 191 LKEVRLLLSSGIKEIILIAQDLGDY-GKDFSSDRS--SQLEYLLKEILKEPGDYWLRLLY 247

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
            +P +++D +I        L+PY+ +P+Q  +DRILKSM R  +  +   ++ ++R   P
Sbjct: 248 LYPDEVNDAIIDLMEHDPRLLPYVDIPLQHINDRILKSMRRTTSKAQILALLQKLRERIP 307

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
            + I S  IVGFPGET ++F+   D + +        F YS   GTP + +  Q+ E +K
Sbjct: 308 HVYIRSSVIVGFPGETQEEFQELADFIQEGWVDNLGIFTYSQEPGTPAAALPNQISEKIK 367

Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-----GKLVGRSPWLQS-VVLN 441
           + RL  L +  +      N   +GQ +EV+++ +  E       +  G+SP +   V+LN
Sbjct: 368 SSRLKILSQIQKSNVEHHNRNLLGQKVEVIVDGYHPESDLLLTARFYGQSPEVDPCVILN 427


>gi|163847415|ref|YP_001635459.1| MiaB-like tRNA modifying protein YliG [Chloroflexus aurantiacus
           J-10-fl]
 gi|222525264|ref|YP_002569735.1| MiaB-like tRNA modifying enzyme YliG [Chloroflexus sp. Y-400-fl]
 gi|238065320|sp|A9WDA3|RIMO_CHLAA RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|163668704|gb|ABY35070.1| MiaB-like tRNA modifying enzyme YliG [Chloroflexus aurantiacus
           J-10-fl]
 gi|222449143|gb|ACM53409.1| MiaB-like tRNA modifying enzyme YliG [Chloroflexus sp. Y-400-fl]
          Length = 455

 Score =  177 bits (448), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 133/460 (28%), Positives = 219/460 (47%), Gaps = 28/460 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           ++ + + GC  N  DS  M+ +  +QG++ V S ++AD+I++NTC     A  +    LG
Sbjct: 2   KYHIVTLGCPKNAVDSEGMDGLLSTQGHQAVASAEEADVIIVNTCSFIAAARAET---LG 58

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL---LER 142
            ++ L   R + G  L  + AGC+AQ+   E+      V+  +G Q + ++  L   LER
Sbjct: 59  VLKELAG-RKRPGQRL--IAAGCMAQSHPHEVAGVQG-VDATLGTQQWTQINALVGQLER 114

Query: 143 ARF----GKRVVDTDYSVEDKFERLSIVDGGYNRKRGV----TAFLTIQEGCDKFCTFCV 194
                  G+ V     +     +  S  D    + R      +A+L I +GC+  C FC 
Sbjct: 115 PVIPLTPGQPVATIPLTTTTNGQPTSYADWRTTQIRRTHQTPSAYLKISDGCNLRCAFCT 174

Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-RGKGLDGEKCTFSDLLYS 253
           +P  +G   S+ +  V+ EA++L+  GV EI L+ Q++  + R  GL     T    L  
Sbjct: 175 IPSFKGDMRSKPVGAVLAEAQELVAGGVREIVLVAQHLTDYGRDLGLKDGLATLLAELCQ 234

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
           ++  +  +RL Y  ++P  +S+ LI        +  YL +P+Q      L+ M R     
Sbjct: 235 VTPPETWIRLMY--AYPHGISERLITTMASYPQICHYLDMPLQHAHPATLRRMRRPPDTD 292

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
              +II  +R+  PDIAI S FIVG+PGET  +F A ++ +      +  +F+YS   GT
Sbjct: 293 RTLRIIAELRAAMPDIAIRSTFIVGYPGETTAEFHALLEFLQTAQLDRVGAFRYSREPGT 352

Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE---KGKLVG 430
           P + + +QV   V   R   L +  +    + N   VG+ I+VLIE +G         +G
Sbjct: 353 PAAELPDQVRPQVIERRWHELMRLQQTISYTRNQRWVGRTIKVLIEGNGTADDGSALSIG 412

Query: 431 RS----PWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGE 466
           RS    P +   V    N+  G +I V++T      L+GE
Sbjct: 413 RSFRDAPEIDGQVFVWGNYPAGTMIPVQVTQATAYDLWGE 452


>gi|163853309|ref|YP_001641352.1| MiaB-like tRNA modifying enzyme YliG [Methylobacterium extorquens
           PA1]
 gi|238066393|sp|A9W8D2|RIMO_METEP RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|163664914|gb|ABY32281.1| MiaB-like tRNA modifying enzyme YliG [Methylobacterium extorquens
           PA1]
          Length = 448

 Score =  177 bits (448), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 137/458 (29%), Positives = 209/458 (45%), Gaps = 42/458 (9%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
            P+  FV S GC   + DS R+     ++GYE     D AD++++NTC   + A  +  +
Sbjct: 15  APRISFV-SLGCPKALVDSERILTHLRAEGYELSRRHDGADVVIVNTCGFLDSAKAESLA 73

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +G     +N R        V+V GC+  A+ EEI  + P +  V GPQ Y  +   +  
Sbjct: 74  AIGEAMA-ENGR--------VIVTGCMG-AQPEEIREKYPNLLAVTGPQAYESVVAAVHE 123

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           A              D F  L I   G        A+L I EGC+  CTFC++P  RG  
Sbjct: 124 AV---------PPAHDPFLDL-IPPQGVKLTPRHYAYLKISEGCNNRCTFCIIPSLRGDL 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE-----------KCTFSDLL 251
           +SR    V+ EA KL+  GV E+ ++ Q+ +A+   G+D             +  F DL 
Sbjct: 174 VSRPAGDVLREAEKLVKAGVKELLVVSQDTSAY---GIDTRYASSPWQDREVRARFYDLA 230

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
             L E+   VRL Y   +P       + A G +   +PYL +P+Q  S  +LK M R   
Sbjct: 231 KELGELGAWVRLHYVYPYPHVDEVIPLMAEGKI---LPYLDMPLQHASPSVLKRMRRPGN 287

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
             +    I R R + PD+AI S FIVGFPGETD +F   +D + +    +   F+Y P  
Sbjct: 288 QEKQLDRIRRWREICPDLAIRSTFIVGFPGETDAEFEELLDWIREARLERVGCFEYEPVR 347

Query: 372 GTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK--EKGKLV 429
           G   +++   V   VKAER     +      +    A VG+ + V+I++ G    +G+  
Sbjct: 348 GATANDLGLLVPPEVKAERKRRFMEAQSHVSLRLQRAKVGKRLSVIIDEAGPTGARGRSK 407

Query: 430 GRSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYG 465
             +P +   V  +    +  GDI+ V+I       L+G
Sbjct: 408 ADAPEIDGSVHVTSRRPVRPGDIVTVKIERADAYDLHG 445


>gi|294625097|ref|ZP_06703743.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292600606|gb|EFF44697.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
          Length = 457

 Score =  177 bits (448), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 139/460 (30%), Positives = 215/460 (46%), Gaps = 44/460 (9%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  FV S GC   + DS R+      +GY+ V S D AD++V+NTC   + A  +    
Sbjct: 6   PKVGFV-SLGCPKALVDSERILTQLRVEGYDIVPSYDAADVVVVNTCGFIDSAVTESLDA 64

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G   N             V+V GC+ +   E+I    P V  V GPQ Y  + E +  A
Sbjct: 65  IGEAMNANGK---------VIVTGCLGK-RPEQIREAYPQVLAVSGPQDYQSVMEAVHAA 114

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
              +          D F  L + D G        A+L I EGC+  C+FC++P  RG  +
Sbjct: 115 LPPRH---------DPFVDL-VPDYGIKLTPRHYAYLKISEGCNHRCSFCIIPSMRGDLV 164

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS---------L 254
           SR + +V+ EA +L+  GV E+ ++ Q+ +A+ G  L   +  + D LY          L
Sbjct: 165 SRPVDEVLREAERLVRGGVKELLVVSQDTSAY-GVDLKYAERPWRDRLYQTRMKALCEGL 223

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
           SE+    RL Y   +P       + A G L   +PYL +P Q  S RILK M R     +
Sbjct: 224 SELGVWTRLHYVYPYPHVDDVIPLMAEGRL---LPYLDIPFQHASPRILKLMKRPGAVEK 280

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
             + + R +++ P+I + S FIVGFPGETD +F + +D +D+    +  +F YSP  G  
Sbjct: 281 TLERMQRWKAMCPEITVRSTFIVGFPGETDAEFESLLDFLDQAQLDRVGAFAYSPVDGAS 340

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS-- 432
            + + + V E VK ERL     K  +      ++ +G + + L++    E    V RS  
Sbjct: 341 ANALPDPVPEEVKQERLARFMAKQAQISALRLESKIGSVQQCLVDV--IEDDIAVARSRA 398

Query: 433 --PWLQSVVLNSKNH----NIGDIIKVRITDVKISTLYGE 466
             P +  +V           +GD++ V ITD     L+G+
Sbjct: 399 DAPEIDGLVHIQNGGELGLKVGDLVDVEITDSDEHDLFGD 438


>gi|298377685|ref|ZP_06987636.1| Fe-S oxidoreductase [Bacteroides sp. 3_1_19]
 gi|298265388|gb|EFI07050.1| Fe-S oxidoreductase [Bacteroides sp. 3_1_19]
          Length = 444

 Score =  177 bits (448), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 124/403 (30%), Positives = 199/403 (49%), Gaps = 22/403 (5%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N  ++  +  +   QG  +V   + AD+ V+NTC + E A +K    + RI   
Sbjct: 16  TLGCKLNFAETSTIGKLLAEQGVRKVRPGEKADICVVNTCSVTELADKKCRQAIRRIS-- 73

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLP---ELLERARFGK 147
                K+     +VV GC AQ + EE+      V++V+G +    +    E LE+   G 
Sbjct: 74  -----KQHPGAFIVVTGCYAQLKPEEVSHIEG-VDLVLGAEQKLEILQYLENLEKKENGG 127

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
            V+ +       F      D   +R R    FL +Q+GCD +C++C +P+ RG   + ++
Sbjct: 128 AVIASQSKDIRSFSPSCSAD---DRTR---HFLKVQDGCDYYCSYCTIPFARGRSRNGTI 181

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
           + +V++A+++   G  EI L G N+  + GK  D    TF DL+ +L E+ G+VR R ++
Sbjct: 182 ASMVEQAQEVARKGGKEIVLTGVNIGDF-GKSTDE---TFIDLIRALDEVDGIVRYRISS 237

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
             P  ++D  I          P+ H+P+QSGSD +L+ M RR+    +R  I++I+ V P
Sbjct: 238 IEPNLITDEAIDFVAHSKRFAPHFHIPLQSGSDAVLQLMRRRYDTALFRHKIEKIKEVMP 297

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
              I  D IVG  GETD+ F      +  +  +Q   F YS R GT    +   VD   K
Sbjct: 298 HAFIGVDVIVGTRGETDEYFEEARQFIGSLDISQLHVFSYSERPGTQALKIDHVVDPKTK 357

Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG 430
             R   L      +  +F +A +GQ   VL E H K+ GK+ G
Sbjct: 358 HARSQQLLDISDRKLHAFYEAHIGQEANVLFE-HTKKDGKMHG 399


>gi|157964499|ref|YP_001499323.1| MiaB-like tRNA modifying enzyme [Rickettsia massiliae MTU5]
 gi|157844275|gb|ABV84776.1| MiaB-like tRNA modifying enzyme [Rickettsia massiliae MTU5]
          Length = 421

 Score =  177 bits (448), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 120/400 (30%), Positives = 199/400 (49%), Gaps = 37/400 (9%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V ++GC++N+Y+S  +       G + V         + NTC +  KAAEK      + R
Sbjct: 14  VVTFGCRLNIYESEIIRKNLELSGIDNV--------AIFNTCAV-TKAAEK------QAR 58

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ-----TYYRLPELLERA 143
                  K   DL ++V GC AQ    ++    P V+ V+G +      YY++ +     
Sbjct: 59  QAIRKAKKNNPDLKIIVTGCSAQT-SPQMYGNMPEVDKVIGNEEKLLPNYYQITD----- 112

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
              K  V+   SV++    L     G +R     AF+ +Q GCD FCTFC++PY RG   
Sbjct: 113 --AKITVNDIMSVKETASHLVSSFDGKSR-----AFIQVQNGCDHFCTFCIIPYGRGKSR 165

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS-LSEIKGLVR 262
           S ++  +  + + L+ NG  E+   G +V A+ G  L G   TF+ ++   L+ +  L R
Sbjct: 166 SVAIGAIAAQVKHLVLNGFKEVVFTGVDVTAY-GSDLPGNP-TFAQMIKRVLNLVPELKR 223

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LR ++    ++ D L +     + +MP+ H+ +Q+G D ILK M RRH      +   ++
Sbjct: 224 LRLSSIDVAEIDDELFELIAYSERIMPHFHISLQAGDDMILKRMKRRHNRANVIEFCRKL 283

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R++RP+++  +D I GFP ET + F  T  L+ +        F YS R GTP + M  QV
Sbjct: 284 RAIRPEVSFGADIIAGFPTETHEMFENTRKLISEAELQYLHVFPYSEREGTPAARM-PQV 342

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422
            +N++ ER   L+++ + Q   F    +GQ +E+L+E + 
Sbjct: 343 PKNIRKERAKILRQEGQNQLTEFFKKHIGQKVELLVENNN 382


>gi|254563231|ref|YP_003070326.1| AdoMet-dependent methyltransferase, UPF0004 family
           [Methylobacterium extorquens DM4]
 gi|254270509|emb|CAX26512.1| putative AdoMet-dependent methyltransferase, UPF0004 family
           [Methylobacterium extorquens DM4]
          Length = 448

 Score =  176 bits (447), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 137/458 (29%), Positives = 209/458 (45%), Gaps = 42/458 (9%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
            P+  FV S GC   + DS R+     ++GYE     D AD++++NTC   + A  +  +
Sbjct: 15  APRISFV-SLGCPKALVDSERILTHLRAEGYELSRRHDGADVVIVNTCGFLDSAKAESLA 73

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +G     +N R        V+V GC+  A+ EEI  + P +  V GPQ Y  +   +  
Sbjct: 74  AIGEAMA-ENGR--------VIVTGCMG-AQPEEIREKYPNLLAVTGPQAYESVVAAVHE 123

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           A              D F  L I   G        A+L I EGC+  CTFC++P  RG  
Sbjct: 124 AV---------PPAHDPFLDL-IPPQGVKLTPRHYAYLKISEGCNNRCTFCIIPSLRGDL 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE-----------KCTFSDLL 251
           +SR    V+ EA KL+  GV E+ ++ Q+ +A+   G+D             +  F DL 
Sbjct: 174 VSRPAGDVLREAEKLVKAGVKELLVVSQDTSAY---GIDTRYASSPWQDREVRARFYDLA 230

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
             L E+   VRL Y   +P       + A G +   +PYL +P+Q  S  +LK M R   
Sbjct: 231 KELGELGAWVRLHYVYPYPHVDEVIPLMAEGKI---LPYLDMPLQHASPSVLKRMRRPGN 287

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
             +    I R R + PD+AI S FIVGFPGETD +F   +D + +    +   F+Y P  
Sbjct: 288 QEKQLDRIRRWREICPDLAIRSTFIVGFPGETDAEFEELLDWIREARLERVGCFEYEPVK 347

Query: 372 GTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK--EKGKLV 429
           G   +++   V   VKAER     +      +    A VG+ + V+I++ G    +G+  
Sbjct: 348 GATANDLGLLVPPEVKAERKRRFMEAQSHVSLRLQRAKVGKRLSVIIDEAGPTGARGRSK 407

Query: 430 GRSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYG 465
             +P +   V  +    +  GDI+ V+I       L+G
Sbjct: 408 ADAPEIDGSVHVTSRRPVRPGDIVTVKIERADAYDLHG 445


>gi|218296361|ref|ZP_03497104.1| MiaB-like tRNA modifying enzyme YliG [Thermus aquaticus Y51MC23]
 gi|218243155|gb|EED09686.1| MiaB-like tRNA modifying enzyme YliG [Thermus aquaticus Y51MC23]
          Length = 434

 Score =  176 bits (447), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 127/413 (30%), Positives = 206/413 (49%), Gaps = 39/413 (9%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC   + DS ++     + GYE   S ++A+L+++NTC     A E+  + +G     
Sbjct: 8   SLGCPKALVDSEQILSRLRALGYETSPSYEEAELVIVNTCGFITPAVEESLATIGEA--- 64

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               +K  G   VVV GC+  A  E I    P V  V GP    R+ E+++      R  
Sbjct: 65  ----LKANGK--VVVTGCLG-ARPEVIREAHPQVLAVTGPGEVERVLEVVQAVLPAPR-- 115

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
                  D F  L ++           A++ + EGCD  C+FC++P  RG   SR  ++V
Sbjct: 116 -------DPF--LDLIPPQVKLTPRHYAYIKLSEGCDHRCSFCIIPQLRGRLRSRDAAEV 166

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTF----------SDLLYSLSEIKG 259
           + EA +L   G  E+ L+ Q+++A+   G+D G + +F           DLL +++E+  
Sbjct: 167 LAEAYRLAATGTKELLLIAQDLSAY---GVDLGHRESFFGDRLVRAHLKDLLENMAELGV 223

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
            +RL Y   +P       + A G +   +PYL +P+Q  S+RIL+ M R      + + +
Sbjct: 224 WIRLHYVYPYPHVKDLLPLMAEGKV---LPYLDVPLQHASERILRLMRRPGGYGSHLKTL 280

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
              R V P++A+ S FIVGFPGET++DF+  +D +++    +  +F YSP  G   + + 
Sbjct: 281 KAWREVVPELAVRSTFIVGFPGETEEDFQILLDFLEEAELDRVGAFTYSPVEGAEANLLP 340

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS 432
           + V E VK ERL  L +      +  N   VG+++EVL+++   E G  VGRS
Sbjct: 341 DPVPEEVKEERLFRLMELQARISLRKNQGFVGRVLEVLVDEL-PEPGLAVGRS 392


>gi|170741411|ref|YP_001770066.1| ribosomal protein S12 methylthiotransferase [Methylobacterium sp.
           4-46]
 gi|238066403|sp|B0UQE6|RIMO_METS4 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|168195685|gb|ACA17632.1| MiaB-like tRNA modifying enzyme YliG [Methylobacterium sp. 4-46]
          Length = 441

 Score =  176 bits (447), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 138/459 (30%), Positives = 209/459 (45%), Gaps = 44/459 (9%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
            P+  FV S GC   + DS R+     ++GYE     D AD++++NTC   + A  +   
Sbjct: 8   APKISFV-SLGCPKALVDSERILTHLRAEGYELARKHDGADVVIVNTCGFLDSAKAESLQ 66

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +G     +N R        V+V GC+  A+ EEI  R P +  V GPQ Y  +   +  
Sbjct: 67  AIGEAMA-ENGR--------VIVTGCMG-AQPEEIRERYPNLLAVTGPQAYESVVAAVHE 116

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           A              D +  L    G     R   A+L I EGC+  CTFC++P  RG  
Sbjct: 117 AV---------PPAHDPYLDLVPPQGVKLTPRHY-AYLKISEGCNNRCTFCIIPSLRGDL 166

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGE-KCTFSDL 250
           +SR    V+ EA KL+  GV E+ ++ Q+ +A           WR    DGE +  F DL
Sbjct: 167 VSRPAGDVLREAEKLVKAGVKELLVISQDTSAYGVDLRYAASPWR----DGEVRARFVDL 222

Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
             +L E+   VRL Y   +P       + A G +   +PYL +P+Q  S  +L+ M R  
Sbjct: 223 ARALGELGVWVRLHYVYPYPHVDEVIPLMAEGKV---LPYLDMPLQHASPSVLRRMRRPA 279

Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370
              +  + I   RSV PD+AI S FIVGFPGET+ +F   +  + +    +   F Y P 
Sbjct: 280 NQEKMLERIRGWRSVCPDLAIRSTFIVGFPGETEAEFEELLSWLAEAKLERVGCFPYEPV 339

Query: 371 LGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK--EKGKL 428
            G   + +   V + VKAER     +      +    A VG+ + V+I++ G    +G+ 
Sbjct: 340 RGAAANEVAPPVPDEVKAERYRRFMEAQAAVSLRLQRAKVGKRLPVIIDEAGPTVARGRS 399

Query: 429 VGRSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYG 465
              +P +   V  +    +  GDI+ V+I       L+G
Sbjct: 400 KSDAPEIDGSVHVASRRPVRAGDIVTVKIERADTYDLHG 438


>gi|117924969|ref|YP_865586.1| MiaB-like tRNA modifying enzyme YliG [Magnetococcus sp. MC-1]
 gi|238066384|sp|A0L887|RIMO_MAGSM RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|117608725|gb|ABK44180.1| SSU ribosomal protein S12P methylthiotransferase [Magnetococcus sp.
           MC-1]
          Length = 487

 Score =  176 bits (447), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 131/451 (29%), Positives = 216/451 (47%), Gaps = 27/451 (5%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V S GC  N  DS +M   F  +GY  V    +ADL+V+NTC     A  +    +  + 
Sbjct: 41  VISLGCSKNTVDSEQMLGRFVREGYLLVADPLEADLLVVNTCGFIADAERESRESIDEMA 100

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER--ARFG 146
           ++K     +     ++V GC++Q  G ++L   P +++++G   Y  L  LLE    +  
Sbjct: 101 HIKQLYPHKK----LIVTGCLSQRYGAKLLEDHPQIDLLLGAGHYDTLIPLLEAKAPQTV 156

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
             V + D +      RL I  G        +A++ I EGC+  CTFC++P  RG   SR+
Sbjct: 157 DHVTEPDAAASHDVPRL-ITTGES------SAYVKIAEGCNNSCTFCIIPKLRGPFRSRT 209

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
           L  +  E   L D G  E+ L+ Q+   W G+ L  ++ + ++LL  +        +R  
Sbjct: 210 LDDIAAEVALLTDEGCHELILVSQDTT-WYGRDL-PQRSSLTELLQRILASCEAPWIRML 267

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
             +P  +   L++     D L+PY  +P+Q    ++LK M R       RQ++  +R+  
Sbjct: 268 YLYPTLVKKELLQLIAREDRLLPYFDIPLQHADSQVLKRMQRSERLETVRQLVKDVRASV 327

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           PD  + S FIVGFPGE++ +F+  +D + +        F YS   GT   ++ ++VD  V
Sbjct: 328 PDAILRSTFIVGFPGESEAEFQTLLDFIQESQLDWVGVFTYSDEQGTAAYDLPDKVDARV 387

Query: 387 KAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVV 439
              R   L+ LQ+ +   ++      VG+I+ VL+E + +E    VGR    +P +   V
Sbjct: 388 AEARRDQLMALQQPITSARLQ---RWVGEIVAVLVESYDEEHACFVGRFWAQAPEVDGQV 444

Query: 440 LNSKNHNI--GDIIKVRITDVKISTLYGELV 468
           L   N  +  G  + V IT V    LYG+L+
Sbjct: 445 LIQCNEELEMGIFVPVAITQVLGYDLYGDLL 475


>gi|313157725|gb|EFR57136.1| tRNA methylthiotransferase YqeV [Alistipes sp. HGB5]
          Length = 432

 Score =  176 bits (447), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 135/435 (31%), Positives = 211/435 (48%), Gaps = 25/435 (5%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +R    + GC++N  +S  +   F   G+ RV    +AD+ V+N+C + E A +K     
Sbjct: 4   RRVNFHTLGCKLNFSESSTLAREFERGGFVRVAPDAEADICVINSCSVTEHADKKC---- 59

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT----YYRLPELL 140
              RNL     +     ++ V GC AQ + +EI      V++V+        Y R+ EL 
Sbjct: 60  ---RNLIRKLHRRNPGAIIAVTGCYAQLKPQEIAAIEG-VDIVLSNNDKGMLYKRVVELS 115

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
            + R      DT+ S+   F   S  D    R R   AFL +Q+GCD  C +C + Y RG
Sbjct: 116 GKGRAQIYSCDTE-SLTSFFAAFSSGD----RTR---AFLKVQDGCDYKCAYCTIHYARG 167

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
              +  ++ +V EAR++   G  EI + G N   + G+   GE+  F DLL +L+E++G+
Sbjct: 168 GSRNMPIADLVAEARQIAAAGQKEIVITGINTGDF-GR-TTGER--FIDLLRALNEVEGI 223

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R R ++  P  ++D +I           + H+P+QSGSD+IL  M RR+T   +   I 
Sbjct: 224 ERYRISSIEPNLLTDEIIAFCAASPKFQHHFHIPLQSGSDKILGLMRRRYTTARFADRIA 283

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
            +R++ PD  I  D IVGFPGET++DFR T D ++ +  A    F +S R GTP  +M  
Sbjct: 284 AVRALMPDAFIGIDVIVGFPGETEEDFRTTYDFLEGLKPAFLHIFPFSERPGTPAVDMPG 343

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440
           +V  +V   R+  L++       +F    VG    VL E   +  G + G +   + V  
Sbjct: 344 KVQPSVATRRVAELEELCGRLHGAFCAKAVGSEDTVLFESTLR-GGMMFGYTGSYRRVKA 402

Query: 441 NSKNHNIGDIIKVRI 455
                 I  I +VR 
Sbjct: 403 PYDRTRINAICRVRF 417


>gi|229586694|ref|YP_002845195.1| MiaB-like tRNA modifying enzyme [Rickettsia africae ESF-5]
 gi|228021744|gb|ACP53452.1| MiaB-like tRNA modifying enzyme [Rickettsia africae ESF-5]
          Length = 421

 Score =  176 bits (447), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 121/400 (30%), Positives = 201/400 (50%), Gaps = 37/400 (9%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V ++GC++N+Y+S  +       G + V         + NTC +  KAAEK      + R
Sbjct: 14  VVTFGCRLNIYESEIIRKNLELSGIDNV--------AIFNTCAV-TKAAEK------QAR 58

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ-----TYYRLPELLERA 143
                  K   DL ++V GC AQ    ++    P V+ V+G +      YY++ +     
Sbjct: 59  QAIRKAKKNNPDLKIIVTGCSAQT-SPQMYGNMPEVDKVIGNEEKLLPNYYQITD----- 112

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
              K  V+   SV++    L  V     + R   AF+ +Q GCD FCTFC++PY RG   
Sbjct: 113 --AKITVNDIMSVKETASHL--VSSFDCKSR---AFIQVQNGCDHFCTFCIIPYGRGKSR 165

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS-LSEIKGLVR 262
           S ++  +V++ + L+ NG  E+   G +V A+ G  L G   TF+ ++   L+ +  L R
Sbjct: 166 SVAIGAIVEQVKHLVLNGFKEVVFTGVDVTAY-GSDLPGSP-TFAQMIKRVLNLVPELKR 223

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LR ++    ++ D L +     + +MP+ H+ +Q+G D ILK M RRH      +   ++
Sbjct: 224 LRLSSIDVAEIDDELFELIAYSERIMPHFHISLQAGDDMILKRMKRRHNRASVIEFCRKL 283

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R++RP+++  +D I GFP ET + F  T  L+ +        F YS R GTP + M  QV
Sbjct: 284 RAIRPEVSFGADIIAGFPTETPEMFENTRQLISEAELQYLHVFPYSEREGTPAARM-PQV 342

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422
            +N++ ER   L+++ + Q   F    +GQ +E+L+E + 
Sbjct: 343 PKNIRKERAAILRQEGQNQLTEFFKKHIGQKVELLVENNN 382


>gi|188990993|ref|YP_001903003.1| MiaB-family RNA modification enzyme, probable [Xanthomonas
           campestris pv. campestris str. B100]
 gi|167732753|emb|CAP50947.1| MiaB-family RNA modification enzyme, probable [Xanthomonas
           campestris pv. campestris]
          Length = 622

 Score =  176 bits (447), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 143/483 (29%), Positives = 224/483 (46%), Gaps = 50/483 (10%)

Query: 7   LIGVAHMVSQIVDQC------IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD 60
           +IG+A    + V Q       + P+  FV S GC   + DS R+      +GY+ V S D
Sbjct: 148 IIGLAQAPGRSVSQAPASMSQLNPKVGFV-SLGCPKALVDSERILTQLRVEGYDIVPSYD 206

Query: 61  DADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRR 120
            AD++V+NTC   + A  +    +G   N             V+V GC+ +   E+I   
Sbjct: 207 AADVVVVNTCGFIDSAVTESLDAIGEAMNANGK---------VIVTGCLGK-RPEQIREA 256

Query: 121 SPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFL 180
            P V  V GPQ Y  + E +  A   +          D F  L + D G        A+L
Sbjct: 257 YPQVLAVSGPQDYQSVMEAVHAALPPR---------HDPFVDL-VPDYGIKLTPRHYAYL 306

Query: 181 TIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL 240
            I EGC+  C+FC++P  RG   SR + +V+ EA +L+  GV E+ ++ Q+ +A+ G  L
Sbjct: 307 KISEGCNHRCSFCIIPSMRGDLASRPVDEVLREAERLVRGGVKELLVVSQDTSAY-GVDL 365

Query: 241 DGEKCTFSDLLY---------SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL 291
              +  + D +Y          LSE+    RL Y   +P       + A G L   +PYL
Sbjct: 366 KYAERPWRDRMYQTRMKALCEGLSELGVWTRLHYVYPYPHVDDVIPLMAEGKL---LPYL 422

Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351
            +P Q  S RILK M R     +  + + R +++ P+I + S FIVGFPGETD +F A +
Sbjct: 423 DIPFQHASPRILKLMKRPGAVEKTLERVQRWKAMCPEITVRSTFIVGFPGETDAEFEALL 482

Query: 352 DLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVG 411
           + +D+    +  +F YSP  G   + + + V E +K ERL     +  E   +  +A +G
Sbjct: 483 EFLDQAQLDRVGAFAYSPVEGASANALPDPVPEELKQERLARFMARQAEISAARLEAKIG 542

Query: 412 QIIEVLIEKHGKEKGKLVGRS----PWLQSVVLNSKNH----NIGDIIKVRITDVKISTL 463
            + + L++    E    V RS    P +  +V           +GD++ V ITD     L
Sbjct: 543 TVQQCLVDL--IEDDIAVARSRADAPEIDGLVHIQNGGELKLKVGDLVDVEITDSDEHDL 600

Query: 464 YGE 466
           +G+
Sbjct: 601 FGD 603


>gi|269215615|ref|ZP_06159469.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Slackia exigua ATCC
           700122]
 gi|269131102|gb|EEZ62177.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Slackia exigua ATCC
           700122]
          Length = 423

 Score =  176 bits (447), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 137/434 (31%), Positives = 204/434 (47%), Gaps = 30/434 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           RF + + GC++N  +S  +  M    G    +    ADLIV+NTC +  +A +K      
Sbjct: 12  RFSIVNLGCKVNRVESDEVASMLLGSGGIEADP-SSADLIVVNTCTVTGEAEKKT----- 65

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
             R      ++   D  VVV GC +  +          V+VV     +  L  +      
Sbjct: 66  --RKAVRHALRASDDARVVVTGCASAIDPATYEAMGERVDVVPRLSLHDYLTGIGAHGAQ 123

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLT-----IQEGCDKFCTFCVVPYTRG 200
           G R   +  +  D+   LS  D    R  G  +F T     IQ+GCD  CTFC+V   RG
Sbjct: 124 GDREPASCAAKADRSFALS--DAAAARVGG--SFPTRVPVKIQDGCDNACTFCIVHVARG 179

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
              SR  + V  E   L   GV EI L G N+  +R    D    T ++ L S +     
Sbjct: 180 RSRSRDAAAVEREVSALGAAGVREIVLSGINLGRYRCG--DAGLATLAERLLSCAP---E 234

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLD-VLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
            RLR ++  P+ + D LI+        +  +LHLP+QSGS RIL+ M R ++A  +  ++
Sbjct: 235 TRLRISSIEPQSVDDALIEVMATSGGRVCRHLHLPLQSGSTRILRQMARPYSAQRFAGLV 294

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
           DR+R+  P IA+S+D IVGFPGETD DF +T D+V   G+++   F+YSPR GTP +   
Sbjct: 295 DRLRARIPGIALSTDVIVGFPGETDADFASTCDVVRTCGFSKLHVFRYSPRRGTPAAARG 354

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV 439
           +QV   VK ER   L+    E +     +  G +   L+E H +   +     P  +   
Sbjct: 355 DQVPSAVKIERAHMLEALGAELRAQDRASRAGTVELALVESHARATTESYYGVPAPEGA- 413

Query: 440 LNSKNHNIGDIIKV 453
                 N GD+++V
Sbjct: 414 ------NAGDLVEV 421


>gi|291548154|emb|CBL21262.1| RNA modification enzyme, MiaB family [Ruminococcus sp. SR1/5]
          Length = 375

 Score =  176 bits (447), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 108/366 (29%), Positives = 204/366 (55%), Gaps = 21/366 (5%)

Query: 100 DLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-----ERARFGKRVVDTDY 154
           + +VV  GC  Q  GE+ L +   +++V+G      + E L     ++   G  V+  + 
Sbjct: 4   EAIVVATGCYVQTGGEK-LEKDEAIDLVLGNNQKINIVEALAEYAEDKPGHGSHVIKINQ 62

Query: 155 SVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEA 214
           + E  +E LSI     +    V A++ +Q+GC++FCT+C++PY RG   SR++  V+ E 
Sbjct: 63  TKE--YEELSIDHTAEH----VRAYIKVQDGCNQFCTYCIIPYARGRVRSRNIESVLKEV 116

Query: 215 RKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMS 274
           R L + G  E+ L G +++++     + +K T   L+ ++ EI+G+ R+R  +  P  ++
Sbjct: 117 RALAEKGYKEVVLTGIHLSSYGVDFPEEKKETLLSLIRAVHEIEGIRRIRLGSLEPGIVT 176

Query: 275 DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSD 334
               +    L  + P+ HL +QSG D  L+ MNRR+ + EYR+  + +R V  + A+++D
Sbjct: 177 REFAEGIAALPKVCPHFHLSLQSGCDETLERMNRRYRSGEYRERCELLREVYGNPALTTD 236

Query: 335 FIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM---LEQVDENVKAERL 391
            IVGFP E++++FR + D VD I + +   FKYS R GT  + M   L + +++ ++E++
Sbjct: 237 VIVGFPQESEEEFRKSYDFVDSIRFYETHIFKYSRRQGTKAAAMDGQLTEAEKSFRSEKM 296

Query: 392 LCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK--LVGRS-PWLQSVVLNSKNHNIG 448
           + L  +       +  + +G+ +EVLIE+   + G+   +G S  ++++ V  S+ + + 
Sbjct: 297 IELHHR---HAGDYEKSMLGKNLEVLIEEEYTKDGRTWYLGHSREYIKTAVPKSEAYGVN 353

Query: 449 DIIKVR 454
           DI+ V+
Sbjct: 354 DIVIVK 359


>gi|87312136|ref|ZP_01094241.1| hypothetical protein DSM3645_25704 [Blastopirellula marina DSM
           3645]
 gi|87285164|gb|EAQ77093.1| hypothetical protein DSM3645_25704 [Blastopirellula marina DSM
           3645]
          Length = 427

 Score =  176 bits (447), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 132/430 (30%), Positives = 212/430 (49%), Gaps = 28/430 (6%)

Query: 52  GYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQ 111
           GY  V     AD +V+NTC   E A  + ++ +  +  LK    ++G    VVV GC+A+
Sbjct: 9   GYSLVQEPVGADFVVVNTCGFIEAARTESFAAIHEMLELK----RQGKIRGVVVCGCLAE 64

Query: 112 AEGEEILRRSPIVNVVVG-------PQTYYRLPELLERARFGKRVVDTDYSVEDKFERLS 164
            + E++L   P ++ VVG        +   RL   L+  R   R      ++ED+  RL 
Sbjct: 65  RQKEQLLLDCPEIDQVVGVFGREEITKVADRLVGNLDEQREVFRPAPV-RALEDR-HRLR 122

Query: 165 IVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCE 224
           I    +       A+L + EGCD+ CTFC +P  RG   ++ + +V+ EA +L  +GV E
Sbjct: 123 ITPKHF-------AYLKVSEGCDRLCTFCAIPKMRGKHATKPMEEVIREAEELAADGVRE 175

Query: 225 ITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL 284
           + ++ Q+   + G  L GE    + LL  L+++KG   +R    +P  + D L++   D 
Sbjct: 176 LIVVAQDTTYY-GLDLYGEP-RLAPLLKQLNDVKGFDWIRLMYFYPMYIDDHLLQTIADA 233

Query: 285 DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETD 344
           D ++PY+ +P+Q  +D +L+ M+RR T       I R+R   PD+AI + FI GFPGETD
Sbjct: 234 DKIVPYIDMPLQHINDTMLRRMSRRVTRSSTEDTIARMRKFIPDLAIRTTFITGFPGETD 293

Query: 345 DDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVS 404
           + F      V +  + +   F YS   GTP   + + + E V AER   L +  +E    
Sbjct: 294 EQFEELCGFVAEQKFERVGVFTYSREEGTPAVKLPDALPEEVAAERRDRLMEVQQEVVFD 353

Query: 405 FNDACVGQIIEVLIEKH-GKEKGKLVGRS----PWLQSVVLNS-KNHNIGDIIKVRITDV 458
            NDA VG  ++V++++    +    +GR+    P +  VV  S +    G I+K  I   
Sbjct: 354 RNDALVGTTMDVILDQQVPGQATAWIGRTKHDAPDVDCVVFVSGEGLAAGQIVKTEIVAT 413

Query: 459 KISTLYGELV 468
               L G  V
Sbjct: 414 HEYDLIGAAV 423


>gi|163756447|ref|ZP_02163560.1| possible 2-methylthioadenine synthetase [Kordia algicida OT-1]
 gi|161323555|gb|EDP94891.1| possible 2-methylthioadenine synthetase [Kordia algicida OT-1]
          Length = 450

 Score =  176 bits (447), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 128/424 (30%), Positives = 216/424 (50%), Gaps = 28/424 (6%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N  ++  +   F  +G+E+V+  + AD+ V+NTC + E A +       R + +
Sbjct: 11  TLGCKLNFSETSTIARNFQEEGFEKVDFSEHADMYVINTCSVTENADK-------RFKTI 63

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLP----ELLERARFG 146
                K   D  V   GC AQ + EE L     V++V+G    ++L     +LL R    
Sbjct: 64  VKQAQKVNPDAFVAAVGCYAQLKPEE-LAAVDGVDLVLGATEKFKLTSYINDLLSRPERS 122

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           + + +  +S E   E      G Y+      AFL +Q+GCD  CT+C +P  RGI  S +
Sbjct: 123 RGIGEV-HSCE--IEEADFYVGSYSFGDRTRAFLKVQDGCDYKCTYCTIPLARGISRSDT 179

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK---CTFSDLLYSLSEIKGLVRL 263
           L  V+  A+++ +  + EI L G N+  + GKG  G K    TF +L+ +L  ++G+ RL
Sbjct: 180 LENVLKNAKEISEKNIKEIVLTGVNIGDY-GKGEFGNKKHEHTFLELVQALDTVEGIERL 238

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R ++  P  + +  I      +  +P+ H+P+QSGS+ +L+ M RR+    Y   + +I+
Sbjct: 239 RISSIEPNLLKNETIDFVSKSNTFVPHFHIPLQSGSNTLLRLMRRRYMRELYVDRVRKIK 298

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
            V PD  I  D IVGFPGETD+ F  T + + ++  +    F YS R  T  + M   V 
Sbjct: 299 EVMPDACIGVDVIVGFPGETDEIFLETYNFLTELDISYLHVFTYSERENTVAAEMEGVVP 358

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG--------RSPWL 435
           +NV+ +R   L+    +++ +F ++ +G+   VL E   KE G + G        ++PW 
Sbjct: 359 QNVRKKRSKMLRGLSVKKRRAFYESQLGKTKTVLFEGENKE-GYIHGFTENYVKVKAPWN 417

Query: 436 QSVV 439
            ++V
Sbjct: 418 PALV 421


>gi|37675741|ref|NP_936137.1| 2-methylthioadenine synthetase [Vibrio vulnificus YJ016]
 gi|320157907|ref|YP_004190285.1| ribosomal protein S12p Asp88, methylthiotransferase [Vibrio
           vulnificus MO6-24/O]
 gi|81756249|sp|Q7MG88|RIMO_VIBVY RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|37200280|dbj|BAC96107.1| 2-methylthioadenine synthetase [Vibrio vulnificus YJ016]
 gi|319933219|gb|ADV88082.1| ribosomal protein S12p Asp88 methylthiotransferase [Vibrio
           vulnificus MO6-24/O]
          Length = 469

 Score =  176 bits (447), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 134/456 (29%), Positives = 224/456 (49%), Gaps = 46/456 (10%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ DS R+     ++GYE VNS  D+D++++NTC   + A ++    +G     
Sbjct: 40  SLGCPKNLVDSERILTQLRTEGYEIVNSYHDSDVVIVNTCGFIDSAVQESLDTIGEA--- 96

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               +KE G   V+V GC+   E +EI    P V  + GP  Y  + E + +  F  +  
Sbjct: 97  ----LKENGK--VIVTGCLGARE-DEIREVHPGVLGITGPHAYENVLEHVHQ--FAPK-- 145

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
                  + F  L + D G        A+L I EGC+  CTFC++P  RG  +SR + ++
Sbjct: 146 ----PEHNPFTSL-VPDHGVKLTPKHYAYLKISEGCNHRCTFCIIPSMRGDLVSRPVGEI 200

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT-FSDLLYSLSEIKGL--------- 260
           + EA +L + GV E+ ++ Q+ +A+   G+D +    F++       IK L         
Sbjct: 201 LSEAERLKNAGVKELLVISQDTSAY---GVDSKHSLGFANGSPVRQNIKALSEELGKMGI 257

Query: 261 -VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
            VRL Y   +P       + A G +   +PYL +P Q  S  +LK+M R   A      I
Sbjct: 258 WVRLHYVYPYPHVDDLIPLMAEGKI---LPYLDIPFQHASPNVLKAMKRPGRAERTLDQI 314

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            + R + P++ I S FIVGFPGETD+DF   ++ + +    +   FKYSP  G   +++ 
Sbjct: 315 KKWREICPELVIRSTFIVGFPGETDEDFEMLLEWLKEAQLDRVGCFKYSPVEGAAANDID 374

Query: 380 EQVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPW 434
           +Q+ E VK    ER + +Q+++   ++      +G  ++V+I++  +E   G+    +P 
Sbjct: 375 DQISEEVKQERFERFMLVQQEISAAKLQKR---IGSTMKVIIDEVDEEGAIGRTYADAPE 431

Query: 435 LQSVV-LNSKNH-NIGDIIKVRITDVKISTLYGELV 468
           +  +V LN +     G+++ V I       L+G LV
Sbjct: 432 IDGLVYLNGETSLKAGELVDVLIEHADEYDLWGSLV 467


>gi|240140720|ref|YP_002965200.1| putative AdoMet-dependent methyltransferase, UPF0004 family
           [Methylobacterium extorquens AM1]
 gi|240010697|gb|ACS41923.1| putative AdoMet-dependent methyltransferase, UPF0004 family
           [Methylobacterium extorquens AM1]
          Length = 448

 Score =  176 bits (447), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 137/458 (29%), Positives = 209/458 (45%), Gaps = 42/458 (9%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
            P+  FV S GC   + DS R+     ++GYE     D AD++++NTC   + A  +  +
Sbjct: 15  APRISFV-SLGCPKALVDSERILTHLRAEGYELSRRHDGADVVIVNTCGFLDSAKAESLA 73

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +G     +N R        V+V GC+  A+ EEI  + P +  V GPQ Y  +   +  
Sbjct: 74  AIGEAMA-ENGR--------VIVTGCMG-AQPEEIREKYPNLLAVTGPQAYESVVAAVHE 123

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           A              D F  L I   G        A+L I EGC+  CTFC++P  RG  
Sbjct: 124 AV---------PPAHDPFLDL-IPPQGVKLTPRHYAYLKISEGCNNRCTFCIIPSLRGDL 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE-----------KCTFSDLL 251
           +SR    V+ EA KL+  GV E+ ++ Q+ +A+   G+D             +  F DL 
Sbjct: 174 VSRPAGDVLREAEKLVKAGVKELLVVSQDTSAY---GIDTRYASSPWQDREVRARFYDLA 230

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
             L E+   VRL Y   +P       + A G +   +PYL +P+Q  S  +LK M R   
Sbjct: 231 KELGELGAWVRLHYVYPYPHVDEVIPLMAEGKI---LPYLDMPLQHASPSVLKRMRRPGN 287

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
             +    I R R + PD+AI S FIVGFPGETD +F   +D + +    +   F+Y P  
Sbjct: 288 QEKQLDRIRRWREICPDLAIRSTFIVGFPGETDAEFEELLDWIREARLERVGCFEYEPVK 347

Query: 372 GTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK--EKGKLV 429
           G   +++   V   VKAER     +      +    A VG+ + V+I++ G    +G+  
Sbjct: 348 GATANDLGLLVPPEVKAERKRRFMEAQSHVSLRLQRAKVGKRLSVIIDEAGPTVARGRSK 407

Query: 430 GRSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYG 465
             +P +   V  +    +  GDI+ V+I       L+G
Sbjct: 408 ADAPEIDGSVHVTSRRPVRPGDIVTVKIERADAYDLHG 445


>gi|315497313|ref|YP_004086117.1| miab-like tRNA modifying enzyme [Asticcacaulis excentricus CB 48]
 gi|315415325|gb|ADU11966.1| MiaB-like tRNA modifying enzyme [Asticcacaulis excentricus CB 48]
          Length = 443

 Score =  176 bits (447), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 117/394 (29%), Positives = 194/394 (49%), Gaps = 23/394 (5%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V ++GC++N Y+S ++  +    G      +D A  I+ NTC +  +A  +    + R R
Sbjct: 29  VVTFGCRLNSYESEQIRKVAAEDG------LDGA--IIFNTCAVTGEAVRQARQAIRRAR 80

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
                  KE  D  ++V GC AQ + +        V+ ++G     +           + 
Sbjct: 81  -------KENPDARLIVTGCAAQTDPDTFATMGE-VDFIIGNGDKAKAGAYALTPDSARI 132

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
            V+  +SV +    L  +DG  +R R   A++ +Q GCD  CTFC++PY RG   S +  
Sbjct: 133 AVNDIFSVRETAGHL--IDGLKDRAR---AYVEVQNGCDHRCTFCIIPYGRGNSRSAAAG 187

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
            VV +  +L+  G  E+ L G ++ +W G  L G+      +   L  +  L RLR ++ 
Sbjct: 188 DVVGQISRLVAEGYNEVVLTGVDLTSW-GNDLPGQPQLGHLVARILKHVPNLKRLRLSSI 246

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
              ++ D L++   + + L PYLHL +Q G D ILK M RRH   +  +++ ++R +RPD
Sbjct: 247 DAAEIDDTLLRLFAEEERLAPYLHLSLQHGDDLILKRMKRRHLRADAIRLVQKVRVLRPD 306

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           +A  +D I GFP ET++ F  ++ LVD+   A    F YSPR  TP +  + Q+   +  
Sbjct: 307 VAFGADMIAGFPTETEEHFANSLALVDECDLAFLHVFPYSPRPQTPAAK-IPQLPRALIK 365

Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422
           +R   L+ K  E      D  VG+ +  ++EK G
Sbjct: 366 DRAARLRGKAVEALTRHLDKQVGRDVSAVVEKPG 399


>gi|189501679|ref|YP_001957396.1| hypothetical protein Aasi_0223 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|189497120|gb|ACE05667.1| hypothetical protein Aasi_0223 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 441

 Score =  176 bits (446), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 114/400 (28%), Positives = 204/400 (51%), Gaps = 21/400 (5%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +R    + GC++N  ++  +  +F  QGY++V   D+  + ++NTC + E+A +K     
Sbjct: 2   KRVAFYTLGCKLNFSETSAVGRLFTEQGYQKVEFEDNPHIFIINTCSVTEQADKKC---- 57

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
              R +    +K   +  +++ GC AQ + EEI    P V+VV+G    ++L E++  + 
Sbjct: 58  ---RRIVKDALKISPEAFIIIMGCYAQLKPEEIAS-IPGVDVVLGAHEKFKLLEII--SS 111

Query: 145 FGKRVVDTDY-SVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           F K+     Y S        +      +R R    FL +Q+GC+  C+FC +P  RG   
Sbjct: 112 FDKKGQAEVYVSCIKDVNTFTHAHSIGDRTR---TFLKVQDGCNYHCSFCTIPLARGKSR 168

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           S ++  +V++ARK+ D G+ EI L G N+  + G   +  +  F  L+ +L ++  + R 
Sbjct: 169 SDTIESIVEQARKIADQGIKEIVLTGVNIGDY-GIIDNRRQTNFLSLIEALEKVVDIKRF 227

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R ++  P  ++D +I+        +P+ H+P+QSG++ ILK M RR+    Y + +  I+
Sbjct: 228 RISSIEPNLLTDEIIQFVAQSGRFVPHFHIPLQSGNNDILKLMRRRYQRELYVERVAHIK 287

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG---SNMLE 380
            + P   I  D IVGFPGET++ F  T   ++++  +    F YS R  T       ++ 
Sbjct: 288 KLMPHCCIGVDVIVGFPGETEEKFLDTYQFLNELDISYLHVFPYSERQNTQAITLEGIVS 347

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
           Q + N +A  L  L  K   +Q  F +  +G+ +E+L E+
Sbjct: 348 QKERNRRASMLRILSDK---KQRYFYEQNLGKTVEILFEQ 384


>gi|114798740|ref|YP_760652.1| 30S ribosomal protein S12 methylthiotransferase [Hyphomonas
           neptunium ATCC 15444]
 gi|122942374|sp|Q0C0U1|RIMO_HYPNA RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|114738914|gb|ABI77039.1| RNA modification enzyme, MiaB family [Hyphomonas neptunium ATCC
           15444]
          Length = 451

 Score =  176 bits (446), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 133/452 (29%), Positives = 206/452 (45%), Gaps = 43/452 (9%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC   + DS R+     ++GY+       ADL+++NTC   + A ++  + +G     
Sbjct: 23  SLGCPKALVDSERIITRLRAEGYQIAPDYAGADLVLVNTCGFLDSARDESLAAIGEA--- 79

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               I+  G   V+V GC+  AE E I R  P V  V GP  Y  + +           V
Sbjct: 80  ----IEANGK--VIVTGCLG-AEPEVIQRAHPKVLAVTGPHQYEAVMD----------AV 122

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
            T  +         + + G        A+L I EGC+  C+FC++P  RG   SR +  V
Sbjct: 123 HTHLTPPHNPHMDLVPESGLRLTPRHYAYLKISEGCNNRCSFCIIPKLRGDLASRPIHHV 182

Query: 211 VDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYSLSEIKG 259
           + EA KL+  GV E+ ++ Q+ +A           WRG   +     F DL   L  +  
Sbjct: 183 LMEAEKLVAAGVKELLVISQDTSAYGLDIRYKPETWRGSEYE---TRFLDLAKGLGSLGV 239

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
             R+ Y   +P   +   + A G   ++ PYL +P Q  S  +LK+M R     +    I
Sbjct: 240 WTRMHYVYPYPHVDNVIPLMAEG---LITPYLDIPFQHASAPVLKAMKRPGNQDKVLGRI 296

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            + R   PD+AI S FIVGFPGET++DF+  +D + +    +A  FKY          + 
Sbjct: 297 AKWREQVPDLAIRSTFIVGFPGETEEDFQILLDFIREAKIDRAGCFKYENVAHAESGKLE 356

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWL 435
             V E VK ER         E   +  +A VG+ ++V+I+  G+E G+++ R+    P +
Sbjct: 357 GHVPEEVKEERWHRFMTAQAEVSAARAEAQVGRTLDVIIDGPGEEAGEMIARTQADAPEV 416

Query: 436 QSVVL--NSKNHNIGDIIKVRITDVKISTLYG 465
            +VV   N+ +   GDII+  IT      LY 
Sbjct: 417 DAVVYLENAAHLKAGDIIRAEITGADDYDLYA 448


>gi|332970851|gb|EGK09830.1| 2-methylthioadenine synthetase [Psychrobacter sp. 1501(2011)]
          Length = 511

 Score =  176 bits (446), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 135/475 (28%), Positives = 222/475 (46%), Gaps = 45/475 (9%)

Query: 17  IVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA 76
           +    + P+  FV S GC   + DS R+       GY   +  + ADL+V+NTC   E A
Sbjct: 52  VTGSSVAPKVGFV-SLGCPKALVDSERIITELTRDGYRVASDYEGADLVVVNTCGFIESA 110

Query: 77  AEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL 136
            ++    +G         I + G   V+V GC+ + + E+I    P V  V G   Y  +
Sbjct: 111 VQESLDAIGE-------AISQNGK--VIVTGCLGK-DAEKIRDMHPAVLAVTGAHAYDEV 160

Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
              + +     + +    + + K + + +   G        A+L I EGC+  CTFC++P
Sbjct: 161 ITAVSKHAPMPQAIKDKKAYDPKIDLIDL--AGVKLTPSHYAYLKISEGCNHRCTFCIIP 218

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKC 245
             RG  +SR + +V++EA  L   GV E+ ++ Q+ +A           W G  L   K 
Sbjct: 219 SLRGDLVSRPIDEVMNEAMALKKAGVKELLIISQDTSAYGLDLKYKTTFWNGMPL---KS 275

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPR-DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304
            F DL  +L+++   VRL Y   +P  D    L+   GD   L+PYL +P+Q  S  +LK
Sbjct: 276 KFFDLCEALAKVGIWVRLHYVYPYPHVDKVVELMAKPGDRGGLLPYLDIPLQHASPSVLK 335

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
           +M R   +      I + R + PDI I S F+VGFPGET++DF   +D + +    +   
Sbjct: 336 AMKRPAHSENTLARIQKWREINPDIVIRSTFVVGFPGETEEDFEYLLDWLKQAKLDRVGC 395

Query: 365 FKYSPRLGTPGSNMLEQVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKH 421
           F YS   G   +++   V E VK    ER + +Q+++ EQ++      VG+ + VL+++ 
Sbjct: 396 FTYSEIEGAVANDLPNPVPEEVKQERYERFMAVQQQISEQKIQDK---VGKTMTVLVDEI 452

Query: 422 GKEKGKLVGRS----P------WLQSVVLNSK-NHNIGDIIKVRITDVKISTLYG 465
             E    + RS    P      ++  +V N +    +GD+I V I +     L+ 
Sbjct: 453 DNEDYIAICRSYADAPEIDGHVYVDDIVQNGQVALKVGDMITVTIDEASEYDLFA 507


>gi|325916906|ref|ZP_08179151.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Xanthomonas
           vesicatoria ATCC 35937]
 gi|325536852|gb|EGD08603.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Xanthomonas
           vesicatoria ATCC 35937]
          Length = 457

 Score =  176 bits (446), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 138/460 (30%), Positives = 215/460 (46%), Gaps = 44/460 (9%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  FV S GC   + DS R+      +GY+ V S D AD++V+NTC   + A  +    
Sbjct: 6   PKVGFV-SLGCPKALVDSERILTQLRVEGYDIVPSYDAADVVVVNTCGFIDSAVTESLDA 64

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G   N             V+V GC+ +   E+I    P V  V GPQ Y  + E +  A
Sbjct: 65  IGEAMNANGK---------VIVTGCLGK-RPEQIREAYPQVLAVSGPQDYQSVMEAVHAA 114

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
              +          D F  L + D G        A+L I EGC+  C+FC++P  RG   
Sbjct: 115 LPPRH---------DPFVDL-VPDYGIKLTPRHYAYLKISEGCNHRCSFCIIPSMRGDLA 164

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS---------L 254
           SR + +V+ EA +L+  GV E+ ++ Q+ +A+ G  L   +  + D +Y          L
Sbjct: 165 SRPVDEVLREAERLVRGGVKELLVVSQDTSAY-GVDLKYAERPWRDRMYQTRMKALCEGL 223

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
           SE+    RL Y   +P       + A G L   +PYL +P Q  S RILK M R     +
Sbjct: 224 SELGVWTRLHYVYPYPHVDDVIPLMAEGKL---LPYLDIPFQHASPRILKLMKRPGAVEK 280

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
             + + R +++ P+I + S FIVGFPGETD +F + ++ +D+    +  +F YSP  G  
Sbjct: 281 TLERVQRWKAMCPEITVRSTFIVGFPGETDAEFESLLEFLDQAQLDRVGAFAYSPVDGAS 340

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS-- 432
            + + + V E VK +RL     +  E   +  +A +G + + L++    E    V RS  
Sbjct: 341 ANALPDPVPEEVKQQRLARFMARQAEISAARLEAKIGSVQQCLVDL--IEDDIAVARSRA 398

Query: 433 --PWLQSVVLNSKNH----NIGDIIKVRITDVKISTLYGE 466
             P +  +V           +GD+I V ITD     L+G+
Sbjct: 399 DAPEIDGLVHIQNGGELGLKVGDLIDVEITDSDEHDLFGD 438


>gi|158422878|ref|YP_001524170.1| ribosomal protein S12 methylthiotransferase [Azorhizobium
           caulinodans ORS 571]
 gi|238065289|sp|A8I0G1|RIMO_AZOC5 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|158329767|dbj|BAF87252.1| putative 2-methylthioadenine synthetase [Azorhizobium caulinodans
           ORS 571]
          Length = 450

 Score =  176 bits (446), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 142/460 (30%), Positives = 220/460 (47%), Gaps = 40/460 (8%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
            P+  FV S GC   + DS R+     ++GYE   + D ADL+++NTC   + A  +  S
Sbjct: 15  APRISFV-SLGCPKALVDSERIVTRLRAEGYELTRNHDGADLVIVNTCGFLDSAKAESLS 73

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +G         + E G   VVV GC+  AE E+I    P V  + GPQ Y  + + + +
Sbjct: 74  AIGEA-------LAENGK--VVVTGCMG-AEPEQIRAVHPSVLAITGPQQYESVLDAVHQ 123

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           A   K          D F  L + + G        A+L I EGC+  CTFC++P  RG  
Sbjct: 124 AVPPK---------HDPFLDL-VPEQGVKLTPRHYAYLKISEGCNNRCTFCIIPKLRGDL 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-------RGKGLDGEKCT-FSDLLYSL 254
           +SR L++V+ EA KL+  GV E+ ++ Q+ +A+         +  D +  T F DL  +L
Sbjct: 174 VSRPLNEVMREAEKLVAAGVKELLVISQDTSAYGVDLKYAESRWKDRDWATRFFDLADAL 233

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
            ++   VRL Y   +P       + A G +   +PYL +P Q  S  +L+ M R     +
Sbjct: 234 GDLGAWVRLHYVYPYPHVDRVMELMASGKV---LPYLDIPFQHASPTVLRRMKRPAAQEK 290

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
               +   R   PDI + S FIVGFPGET+++F+  +D +D+    +   FK+ P  G P
Sbjct: 291 TLARVLAWRDAVPDITLRSTFIVGFPGETEEEFQELLDFLDEAQLDRVGCFKFEPVAGAP 350

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFN--DACVGQIIEVLIEK--HGKEKGKLVG 430
            + +   V + VKAER       L++Q +S       VG   +V+I+    G   G+  G
Sbjct: 351 ANALENPVPDEVKAERYDRFM--LKQQAISARRLKRKVGTRQQVIIDSVTPGGAIGRTKG 408

Query: 431 RSPWLQ-SVVLNSKNH-NIGDIIKVRITDVKISTLYGELV 468
            +P +  SV + S+    +G+I  V+I       L G  V
Sbjct: 409 DAPEIDGSVKIASRRPLRVGEIATVKIEAADAYDLIGSAV 448


>gi|113971781|ref|YP_735574.1| ribosomal protein S12 methylthiotransferase [Shewanella sp. MR-4]
 gi|114046009|ref|YP_736559.1| ribosomal protein S12 methylthiotransferase [Shewanella sp. MR-7]
 gi|123130058|sp|Q0HEK0|RIMO_SHESM RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|123326922|sp|Q0HZF3|RIMO_SHESR RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|113886465|gb|ABI40517.1| MiaB-like tRNA modifying enzyme YliG [Shewanella sp. MR-4]
 gi|113887451|gb|ABI41502.1| MiaB-like tRNA modifying enzyme YliG [Shewanella sp. MR-7]
          Length = 476

 Score =  176 bits (446), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 141/467 (30%), Positives = 223/467 (47%), Gaps = 42/467 (8%)

Query: 18  VDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA 77
            D      R    S GC  N+ DS R+       GYE  NS D+ADL+++NTC   + A 
Sbjct: 26  ADSTATGNRIGFVSLGCPKNLVDSERILTQLRIDGYEVTNSYDNADLVIVNTCGFIDAAV 85

Query: 78  EKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLP 137
           E+    L  +R      ++E G   V+V GC+   E  +I    P V  + GP +Y  + 
Sbjct: 86  EES---LDAVREA----LEENGK--VIVTGCLGAKEN-QIREVHPDVLEITGPHSYEAV- 134

Query: 138 ELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197
                    K V   ++   + F  L I   G        A+L I EGCD  CTFC++P 
Sbjct: 135 ----LKHVHKYVPKPEH---NPFTSL-IPQTGVKLTPKHYAYLKISEGCDNRCTFCIIPA 186

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE---------KCTFS 248
            RG   SR    V+DEA++L+++GV EI ++ Q+ +A+ GK   G          K   +
Sbjct: 187 LRGDLDSRPAGSVLDEAKRLVESGVQEILVVSQDTSAY-GKDKGGRTDFWNGMPVKQDIT 245

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
            L   L ++   VRL Y   +P       + A G   +++PYL +P+Q  S RILK M R
Sbjct: 246 SLARQLGKMGAWVRLHYIYPYPWVDDLIPLMAEG---LILPYLDIPMQHASPRILKMMKR 302

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
                   + I R R + PD+ I S FIVGFPGET++DF   +D + +    +   FKYS
Sbjct: 303 PGRVDRQLEAIQRWREICPDLVIRSTFIVGFPGETEEDFEMLLDFLREARLDRVGCFKYS 362

Query: 369 PRLGTPGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK 425
              G   + + E + E+VK +   R + +Q ++  ++++     VG+ +++LI+   +E 
Sbjct: 363 EVEGAVANTIAELISEDVKEDRYHRFMEVQAEISAERLA---RFVGRTMDILIDDVDEEG 419

Query: 426 --GKLVGRSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468
             G+    +P +  +V  +    +  G +++  IT      L+ ELV
Sbjct: 420 AIGRSFADAPEIDGMVFINGETELEPGMLVRAVITHSDEHDLWAELV 466


>gi|117922061|ref|YP_871253.1| ribosomal protein S12 methylthiotransferase [Shewanella sp. ANA-3]
 gi|238066601|sp|A0L1C8|RIMO_SHESA RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|117614393|gb|ABK49847.1| MiaB-like tRNA modifying enzyme YliG [Shewanella sp. ANA-3]
          Length = 480

 Score =  176 bits (446), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 139/454 (30%), Positives = 221/454 (48%), Gaps = 42/454 (9%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ DS R+       GYE  NS D+ADL+++NTC   + A E+    L  +R  
Sbjct: 43  SLGCPKNLVDSERILTQLRIDGYEVTNSYDNADLVIVNTCGFIDAAVEES---LDAVREA 99

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               ++E G   V+V GC+   E  +I    P V  + GP +Y  +          K V 
Sbjct: 100 ----LEENGK--VIVTGCLGAKEN-QIREVHPDVLEITGPHSYEAV-----LKHVHKYVP 147

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
             ++   + F  L I   G        A+L I EGCD  CTFC++P  RG   SR    V
Sbjct: 148 KPEH---NPFTSL-IPQTGVKLTPKHYAYLKISEGCDNRCTFCIIPALRGDLDSRPAGSV 203

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE---------KCTFSDLLYSLSEIKGLV 261
           +DEA++L+++GV EI ++ Q+ +A+ GK   G          K   + L   L ++   V
Sbjct: 204 LDEAKRLVESGVQEILVVSQDTSAY-GKDKGGRTDFWNGMPVKQDITSLARQLGKMGAWV 262

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           RL Y   +P       + A G   +++PYL +P+Q  S RILK M R        + I R
Sbjct: 263 RLHYIYPYPWVDDLIPLMAEG---LILPYLDIPMQHASPRILKMMKRPGRVDRQLEAIQR 319

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
            R + PD+ I S FIVGFPGET++DF   +D + +    +   FKYS   G   + + E 
Sbjct: 320 WREICPDLVIRSTFIVGFPGETEEDFEMLLDFLREARLDRVGCFKYSEVEGAVANTIAEL 379

Query: 382 VDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPWLQ 436
           + E+VK +   R + +Q ++  ++++     VG+ +++LI+   +E   G+    +P + 
Sbjct: 380 ISEDVKEDRYHRFMEVQAEISAERLA---RFVGRTMDILIDDVDEEGAIGRSFADAPEID 436

Query: 437 SVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468
            +V  +    +  G +++  IT      L+ ELV
Sbjct: 437 GMVFINGETELEPGMLVRAVITHSDEHDLWAELV 470


>gi|53802700|ref|YP_112621.1| MiaB-like tRNA modifying enzyme YliG [Methylococcus capsulatus str.
           Bath]
 gi|81683237|sp|Q60CM4|RIMO_METCA RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|53756461|gb|AAU90752.1| MiaB-like tRNA modifying enzyme YliG [Methylococcus capsulatus str.
           Bath]
          Length = 437

 Score =  176 bits (446), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 134/457 (29%), Positives = 216/457 (47%), Gaps = 49/457 (10%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC   + DS R+     ++GY  V +  DADL+V+NTC   + A E+    +G     
Sbjct: 10  SLGCPKALVDSERIITQLRAEGYAIVPTYQDADLVVVNTCGFIDAAVEESLEAIGEA--- 66

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               + E G   V+V GC+ +   EEI  R P V  V G   Y  +            V 
Sbjct: 67  ----VAENGK--VIVTGCLGE-RPEEIQARHPAVLKVTGAHAYEEV---------MNAVH 110

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
           +    + D F  L    G     R   A+L I EGC+  C+FC++P  RG  +SR + +V
Sbjct: 111 EHLPPLHDPFMDLVPPQGVRLTPRHY-AYLKISEGCNHRCSFCIIPALRGDLVSRPIGEV 169

Query: 211 VDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYSLSEIKG 259
           + EA +L+  GV EI ++ Q+ +A           W G+ L   +  F +L  +L ++  
Sbjct: 170 MTEAERLVAAGVKEILVVSQDTSAYGADLGYRTGFWGGRPL---RTRFQELARALGDLGV 226

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
            +RL Y   +P       + A G L   +PYL +P Q  S R+LK+M R          I
Sbjct: 227 WIRLHYVYPYPHVDEVIPLMAEGRL---LPYLDIPFQHASARVLKAMKRPAATENILAAI 283

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            R R V P++ + S FIVGFPGET+D+FR  +D +++    +   F+YSP  G   + + 
Sbjct: 284 RRWREVCPELTLRSTFIVGFPGETEDEFRELLDFLEEARLDRVGCFEYSPVKGAAANALP 343

Query: 380 EQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR---SP 433
           + V   VKAE   RL+ +Q+++   ++      +G+   VL+++   E+G +  R   +P
Sbjct: 344 DPVPAEVKAERHARLMEVQERISAARLRTR---IGRTETVLVDE-VVEEGAVARRRADAP 399

Query: 434 WLQ-SVVLNSKNH-NIGDIIKVRITDVKISTLYGELV 468
            +   V ++   H  +G+ ++    D     L+  L 
Sbjct: 400 EIDGQVFIDGATHLEVGEFVEATFEDADAHDLWARLA 436


>gi|312129877|ref|YP_003997217.1| miab-like tRNA modifying enzyme [Leadbetterella byssophila DSM
           17132]
 gi|311906423|gb|ADQ16864.1| MiaB-like tRNA modifying enzyme [Leadbetterella byssophila DSM
           17132]
          Length = 442

 Score =  176 bits (446), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 131/434 (30%), Positives = 214/434 (49%), Gaps = 29/434 (6%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N  ++  +   F  +G+++V   ++ D+ ++NTC + E A +K    +   +  
Sbjct: 8   TLGCKLNFSETSTISRTFEEKGFKKVGFNENPDIFIINTCSVTENADKKCRKIVKEAQ-- 65

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
              +I   G   V + GC AQ +  EI      V+ V+G    +RL ELL    F K   
Sbjct: 66  ---KINPNG--FVAIIGCYAQLKPREIAEIEG-VDAVLGAAEKFRLHELL--PTFEK--- 114

Query: 151 DTDYSVEDKFERLSI-----VDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            T   VE+K    SI         Y+       FL +Q+GCD  C++C +P  RG   S 
Sbjct: 115 -TSRPVEEKVYARSIDEPLEYHTSYSLHDRTRTFLKVQDGCDYPCSYCTIPMARGASRSD 173

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT-FSDLLYSLSEIKGLVRLR 264
           ++  VV  AR++  NGV EI L G N+  +    +DG++ + F DL+ +L E++G+ R R
Sbjct: 174 TIENVVKAAREIAANGVKEIVLTGVNIGDF--GIIDGKRTSSFLDLIQALDEVEGIERFR 231

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
            ++  P  +++ +I+        +P+ H+P+QSGS++IL  M RR+    Y + +  IR 
Sbjct: 232 ISSIEPNLLTNEIIQFVAHSKRFVPHFHIPLQSGSNKILGLMRRRYRRELYAERVAAIRE 291

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV-- 382
           V PD  I  D IVG PGE  +DF  T + ++++       F YS R  T    +   V  
Sbjct: 292 VMPDCCIGVDVIVGHPGELHEDFIDTYNFLNELDINYLHVFTYSERANTKALEIKPVVGM 351

Query: 383 -DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
            D N +++ L  L  K R    +F +  +G+   VL E+ G+    + G +     VV  
Sbjct: 352 RDRNERSKMLHILSDKKRR---AFYEDNLGKEFPVLFEE-GEGGDIMHGFTSNYVKVVAK 407

Query: 442 SKNHNIGDIIKVRI 455
                I DI+KVR+
Sbjct: 408 YDPLRINDIVKVRL 421


>gi|255016549|ref|ZP_05288675.1| putative Fe-S oxidoreductase [Bacteroides sp. 2_1_7]
          Length = 444

 Score =  176 bits (446), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 124/403 (30%), Positives = 199/403 (49%), Gaps = 22/403 (5%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N  ++  +  +   QG  +V   + AD+ V+NTC + E A +K    + RI   
Sbjct: 16  TLGCKLNFAETSTIGKLLAEQGVRKVRPGEKADICVVNTCSVTELADKKCRQAIRRIG-- 73

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLP---ELLERARFGK 147
                K+     +VV GC AQ + EE+      V++V+G +    +    E LE+   G 
Sbjct: 74  -----KQHPGAFIVVTGCYAQLKPEEVSHIEG-VDLVLGAEQKLEILQYLENLEKKENGG 127

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
            V+ +       F      D   +R R    FL +Q+GCD +C++C +P+ RG   + ++
Sbjct: 128 AVIASQSKDIRSFSPSCSAD---DRTR---HFLKVQDGCDYYCSYCTIPFARGRSRNGTI 181

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
           + +V++A+++   G  EI L G N+  + GK  D    TF DL+ +L E+ G+VR R ++
Sbjct: 182 ASMVEQAQEVARKGGKEIVLTGVNIGDF-GKSTDE---TFIDLIRALDEVDGIVRYRISS 237

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
             P  ++D  I          P+ H+P+QSGSD +L+ M RR+    +R  I++I+ V P
Sbjct: 238 IEPNLITDEAIDFVAHSKRFAPHFHIPLQSGSDAVLQLMRRRYDTALFRHKIEKIKEVMP 297

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
              I  D IVG  GETD+ F      +  +  +Q   F YS R GT    +   VD   K
Sbjct: 298 HAFIGVDVIVGTRGETDEYFEEARQFIGSLDISQLHVFSYSERPGTQALKIDHVVDPKTK 357

Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG 430
             R   L      +  +F +A +GQ   VL E H K+ GK+ G
Sbjct: 358 HARSQQLLDISDRKLHAFYEAHIGQEANVLFE-HTKKDGKMHG 399


>gi|15678846|ref|NP_275963.1| hypothetical protein MTH826 [Methanothermobacter thermautotrophicus
           str. Delta H]
 gi|6226399|sp|O26914|Y826_METTH RecName: Full=Putative methylthiotransferase MTH_826
 gi|2621916|gb|AAB85324.1| conserved protein [Methanothermobacter thermautotrophicus str.
           Delta H]
          Length = 424

 Score =  176 bits (445), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 134/450 (29%), Positives = 232/450 (51%), Gaps = 39/450 (8%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R +++++GC  N  DS  M  +   +G   +  +DDAD+I++NTC+++     KV   + 
Sbjct: 5   RVYIETFGCTFNQADSEIMAGVLREEGAV-LTGIDDADVIIINTCYVKHPTEHKV---IN 60

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           RI+ ++ +  ++G    +VVAGC+ + +  ++   S   + + GP    R P+ +  A  
Sbjct: 61  RIKKIQETYPEKG----LVVAGCMVEIDPSKLEAISGDASWL-GPHQLRRAPQAVRAASN 115

Query: 146 G--KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           G  +R+      V+ K  R+        R   +   + I EGC+  C++C   + RG   
Sbjct: 116 GLVERITGFTSDVKVKVPRV--------RSNPLIHIIPICEGCNGSCSYCCTRFARGRIQ 167

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVR 262
           S     ++ EAR+ + +G  EI L  Q+  A+   G+D GEK   SD++  +S I G  R
Sbjct: 168 SYPSDLIISEAREAVASGCREIQLTAQDTAAY---GVDTGEK--LSDIIKGISGIPGNFR 222

Query: 263 LRYTTSHP----RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           +R    HP    RD+ D L++A     V   +LHLPVQSGSD +L  M R HT  E+R I
Sbjct: 223 IRVGMMHPASVLRDL-DGLVEAFKSEKVY-SFLHLPVQSGSDSVLADMERGHTVDEFRMI 280

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI--GYAQAFSFKYSPRLGTPGS 376
           ++R RS  PDI+I++D IVG+P E  +DF  T  L++++   +     +++ PR  +   
Sbjct: 281 VERFRSEIPDISIATDIIVGYPTEEREDFMDTCSLLEEVKPSFIHLSKYRHRPRARSSSL 340

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQ 436
           + ++  +   ++  L  L+ ++ E++   N   VG   E+L+ + G+ KG  +GR+    
Sbjct: 341 DEIDFRELRRRSRALEELKMRITEEE---NRRLVGSFQEILVVERGR-KGGFIGRTGSYI 396

Query: 437 SVVLNSKNHNIGDIIKVRITDVKISTLYGE 466
            VV  ++    G   +VRI D   + L  +
Sbjct: 397 PVV--TETGEPGSFRRVRIRDATGTYLLAD 424


>gi|171914402|ref|ZP_02929872.1| MiaB-like tRNA modifying enzyme YliG [Verrucomicrobium spinosum DSM
           4136]
          Length = 478

 Score =  176 bits (445), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 128/448 (28%), Positives = 220/448 (49%), Gaps = 25/448 (5%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ DS  M       G       ++AD++++NTC   + A ++    +  +   
Sbjct: 8   SLGCAKNLIDSEIMIGHLQQAGMAMTPQAEEADVLIINTCSFIDMAKKES---IASVHEA 64

Query: 91  KNSRIKEGGDLL----VVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
            + R  EGG +     ++VAGC+AQ   +E+    P V+  +G     ++  ++E     
Sbjct: 65  VDGR-AEGGKVRAKQKIIVAGCMAQRFAQELPNLMPEVDAFIGLDQLTKVAPIIEGLMGK 123

Query: 147 KRVVD--TDYSVEDKFERLSIVDGGYNR-KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           KR  D   +  V +K + +   D    R     TA++ I EGC+  C+FC++P  RG   
Sbjct: 124 KREEDEAPENHVTEKPQYIPDYDTPRFRLTPKHTAYIKIAEGCNHPCSFCIIPKIRGKHR 183

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQN-----VNAWRGK------GLDGEKC-TFSDLL 251
           SR+   VV EA+ LI +GV EI L+ Q+     ++ W G+      G+D  +  + + L+
Sbjct: 184 SRTQESVVFEAKALIKSGVKEINLISQDTTYFGMDKWEGQRPNPRSGVDSSRGESLATLI 243

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
             L+ ++G   +R   +HP   SD LI+A  + + ++ Y+ +P+Q  SD +L  M R   
Sbjct: 244 RELNALEGDFWIRLLYTHPAHWSDELIQAVAECEKVVKYVDIPLQHISDNMLTLMKRETN 303

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
               R++I R+R+  P IAI + FIVGFPGET+ DF   +  +++  + +A  F YS   
Sbjct: 304 GAYIRELIQRMRAGIPGIAIRTTFIVGFPGETEADFEELVQFIEETKFERAGVFNYSREE 363

Query: 372 GTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR 431
           GT    M   +  + +  R     + L+ +   FN + +G+   VL+E  G  +G+    
Sbjct: 364 GTRADKMEGHLHHSTRKRRWNEAMRVLQHRAEEFNASQLGKTYRVLVENPG--EGRSYMD 421

Query: 432 SPWLQSVVLNSKNHNIGDIIKVRITDVK 459
           S  +  VV       +G+  +V I+D +
Sbjct: 422 SIDIDGVVFVDPALPVGEFAEVTISDWR 449


>gi|85708149|ref|ZP_01039215.1| hypothetical protein NAP1_02900 [Erythrobacter sp. NAP1]
 gi|85689683|gb|EAQ29686.1| hypothetical protein NAP1_02900 [Erythrobacter sp. NAP1]
          Length = 391

 Score =  176 bits (445), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 114/394 (28%), Positives = 189/394 (47%), Gaps = 43/394 (10%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V S GC++N+ +S RM+ M    G          D++V+N+C +  +A  +    + + R
Sbjct: 6   VISLGCRLNIAESERMKGMLADAG----------DVVVVNSCAVTSEAVRQTRQAIRKAR 55

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
             +        D  ++V GC A  E +++                  +PE+        +
Sbjct: 56  AARP-------DARLIVTGCAADIERDQL----------------AAMPEVDGLIANASK 92

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           +    ++V               R R   AF+ +Q GCD  CTFCV+P  RG   S +++
Sbjct: 93  LDPRSWNVPLPEAPPP-----PTRTR---AFIAVQNGCDHACTFCVIPQGRGKSRSMTIA 144

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
           +V+ E    +D G  E  L G +V +W G  L       + +   L+E   L RLR ++ 
Sbjct: 145 EVLREVEHHLDLGAKEAVLTGVDVTSW-GHDLPDTPPLGALVGAVLNEFPNLPRLRMSSL 203

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
              ++ + L +       LMP+LHL +Q G D ILK M RRH+  +   ++ RI+  RP+
Sbjct: 204 DGIEIDEALFELFASEKRLMPHLHLSLQHGHDLILKRMKRRHSRADAVDLVARIKQRRPE 263

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           IAI +D I GFP E+D+   A + ++D++       F YSPR GTP + M  QVD  +  
Sbjct: 264 IAIGADLIAGFPTESDEHHAANLSIIDELDIVHGHIFPYSPRPGTPAARM-PQVDRRIVK 322

Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422
            R   L++++ E++ ++    VG+ +EVL E+ G
Sbjct: 323 ARAAELRERVAERRAAWLTTLVGENLEVLAERDG 356


>gi|306843383|ref|ZP_07475984.1| MiaB-like tRNA modifying enzyme [Brucella sp. BO1]
 gi|306276074|gb|EFM57774.1| MiaB-like tRNA modifying enzyme [Brucella sp. BO1]
          Length = 427

 Score =  176 bits (445), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 128/432 (29%), Positives = 213/432 (49%), Gaps = 34/432 (7%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           ++GC++N Y+S  M+    + G   + ++ D   I+ NTC +  +A  +    + + R  
Sbjct: 7   TFGCRLNTYESEVMKREADAAG---LGTLKDG-AIIFNTCAVTAEAVRQARQAIRKAR-- 60

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ------TYYRLPELLERAR 144
                +E  D  ++V GC AQ E +        V++V+G +      +Y  LP+     +
Sbjct: 61  -----RENPDARIIVTGCAAQTEADNFAAMGE-VDLVLGNEEKLKSNSYRMLPDFGVN-Q 113

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
           F K  V+    V +    +  VD    R R   AF+ +Q GCD  CTFC++PY RG   S
Sbjct: 114 FEKVRVNDIMEVRETASHM--VDAIEGRAR---AFVQVQNGCDHRCTFCIIPYGRGNSRS 168

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
             +  VVD+ ++L+ NG  E+ L G ++ ++ G  L G       +   L+++  L RLR
Sbjct: 169 VPMGAVVDQVKRLVGNGYAEVVLTGVDMTSY-GPDLPGNLRLGKLVKTVLAQVPDLQRLR 227

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
            ++    +  + L++A      LMP+LHL +Q+G D ILK M RRH   +  +  + +R+
Sbjct: 228 LSSIDSIEADEDLMEAIASEKRLMPHLHLSLQAGDDMILKRMKRRHLRDDSIRFCETVRA 287

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           +RPDI   +D I GFP ET++ F+ ++ +V++ G      F YSPR GTP + M  QV  
Sbjct: 288 LRPDIVFGADIIAGFPTETEEMFQNSLKIVEECGLTHLHVFPYSPREGTPAARM-PQVRR 346

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
            +  ER   L+ +         +A  G    +L+EK G      V R+       ++   
Sbjct: 347 EIVKERAARLRTEGDRAYEKHLNALHGTRQRLLVEKEG------VARTEGFTLAAVDQG- 399

Query: 445 HNIGDIIKVRIT 456
            N G+II+  +T
Sbjct: 400 -NAGEIIERIVT 410


>gi|253996254|ref|YP_003048318.1| 30S ribosomal protein S12 methylthiotransferase [Methylotenera
           mobilis JLW8]
 gi|253982933|gb|ACT47791.1| MiaB-like tRNA modifying enzyme YliG [Methylotenera mobilis JLW8]
          Length = 451

 Score =  176 bits (445), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 141/468 (30%), Positives = 223/468 (47%), Gaps = 57/468 (12%)

Query: 13  MVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHI 72
           M      +   P+  FV S GC     D+ R+     ++GYE   S  +ADL+V+NTC  
Sbjct: 1   MTMSTTSKNSTPKVGFV-SLGCPKAGSDAERILTQLRAEGYEISGSYGEADLVVVNTCGF 59

Query: 73  REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT 132
            + A E+    +G   N KN +        V+V GC+   +G  +    P V  V GP  
Sbjct: 60  IDSAVEESLDAIGEAIN-KNGK--------VIVTGCLGAKKGV-VEAAHPSVLAVTGP-- 107

Query: 133 YYRLPELLE--RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190
            + L E++    A   K          + F  L +   G        A+L I EGC+  C
Sbjct: 108 -HALEEVMTAVHANLPKP--------HEPFIDL-VPPQGVRLTPKHYAYLKISEGCNHRC 157

Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKG 239
           +FC++P  RG  +SR + +V++EA  L++ GV EI ++ Q+ +A           W G+ 
Sbjct: 158 SFCIIPSMRGDLVSRPIGEVLNEAENLVNAGVSEILVISQDTSAYGVDVKYRPGFWNGRP 217

Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
           +   K   ++L  +LSE+    RL Y   +P    D +I    D  +++PYL +P Q  S
Sbjct: 218 V---KTRMTELTQALSELGVWTRLHYVYPYPH--VDEVIPLMAD-GLILPYLDVPFQHAS 271

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
            RILK+M R  ++      I   R + PDI I S FI GFPGET+DDF+  +D +++   
Sbjct: 272 PRILKAMKRPASSENNLARIKAWRDICPDITIRSTFIAGFPGETEDDFKQLLDFMEEAQL 331

Query: 360 AQAFSFKYSPRLGTPGSNMLEQVDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEV 416
            +   F YS   G   + + +QV E VK ERL   + +Q+++   +V    A +G I  V
Sbjct: 332 DRVGCFAYSAVDGAAANALPDQVPEEVKQERLSRFMEVQERISAAKVH---AKIGSIQTV 388

Query: 417 L-------IEKHGKEKGKLVGRSPWLQSVVL--NSKNHNIGDIIKVRI 455
           L       +E + +  G+    +P +  VV   +++  N GD ++V I
Sbjct: 389 LVDEIVTDVEGNVEAIGRTKADAPEIDGVVYLEDAEGLNPGDFVEVEI 436


>gi|149922745|ref|ZP_01911170.1| tRNA 2-methylthioadenosine synthase -like protein [Plesiocystis
           pacifica SIR-1]
 gi|149816365|gb|EDM75866.1| tRNA 2-methylthioadenosine synthase -like protein [Plesiocystis
           pacifica SIR-1]
          Length = 453

 Score =  176 bits (445), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 128/443 (28%), Positives = 205/443 (46%), Gaps = 32/443 (7%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R  V ++GC++N  +S  + +   + G+E V   + ADL +LN+C I  +A     + + 
Sbjct: 2   RVAVDTHGCRLNQAESDAIAEQLRAAGHELVPRAELADLYLLNSCAITHEADADARAAV- 60

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR--LPELLERA 143
           R     N  ++      V+V GC A AE  E L   P V  V+G     R  LP L+ +A
Sbjct: 61  RRARRHNPAVE------VIVTGCHANAE-PEALAAMPEVTAVLGNLEKGRAELPRLIAQA 113

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRG-------------VTAFLTIQEGCDKFC 190
               R    D        RLS       R+R                  L +Q+GCD  C
Sbjct: 114 LDSARGERADGGAFVSVSRLSR---SVRRERPDAWSLPPATSVPRTRPLLKVQDGCDYQC 170

Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDL 250
           +FC+VP  RG   S  +  +  + R L+D G  E+ L G ++  W G+ L   +   + L
Sbjct: 171 SFCIVPSVRGRSRSLDVETLATQLRGLVDAGHPEVVLTGAHLGLW-GRDLGQGERGLAAL 229

Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIK-----AHGDLDVLMPYLHLPVQSGSDRILKS 305
           +  L       RLR  +  P ++ D L++       G    L+P+LHLP+Q G D +L++
Sbjct: 230 VAGLRAAVPEARLRLGSVDPHEVDDALVRWVARGVDGRGAGLVPHLHLPIQHGDDGVLRA 289

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           M R H   +  Q+  ++R+  P +AI +D IVGFPGE D  F  T  L + +    A  F
Sbjct: 290 MRRAHRVADLEQLAPKLRAADPHMAIGTDVIVGFPGEDDGAFERTHALFEALAIPFAHVF 349

Query: 366 KYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK 425
            +SPR GTP  ++ ++V     A R   L++++      F D  +G +   ++ +    +
Sbjct: 350 SWSPRSGTPAVDLPDRVPAPTAAARSKALRERVATNWAGFVDGQLGALRSAVVLRRRNRQ 409

Query: 426 GKLVGRSPWLQSVVLNSKNHNIG 448
           G+LV  +     VVL+  +  +G
Sbjct: 410 GQLVALTDNYLRVVLDGPDSALG 432


>gi|238650895|ref|YP_002916751.1| tRNA 2-methylthioadenosine synthase-like protein [Rickettsia
           peacockii str. Rustic]
 gi|238624993|gb|ACR47699.1| tRNA 2-methylthioadenosine synthase-like protein [Rickettsia
           peacockii str. Rustic]
          Length = 421

 Score =  176 bits (445), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 118/398 (29%), Positives = 198/398 (49%), Gaps = 37/398 (9%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           ++GC++N+Y+S  +       G + V         + NTC +  KAAEK      + R  
Sbjct: 16  TFGCRLNIYESEIIRKNLELSGIDNV--------AIFNTCAV-TKAAEK------QARQA 60

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ-----TYYRLPELLERARF 145
                K   DL ++V GC AQ    ++    P V+ V+G +      YY++ +       
Sbjct: 61  IRKAKKNNPDLKIIVTGCSAQT-SPQMYGNMPEVDKVIGNEEKLLPNYYQITD------- 112

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            K  V+   SV++    L       +R     AF+ +Q GCD FCTFC++PY RG   S 
Sbjct: 113 AKITVNDIMSVKETASHLVSCFDCKSR-----AFIQVQNGCDHFCTFCIIPYGRGKSRSV 167

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS-LSEIKGLVRLR 264
           ++  + ++ + L+ NG  E+   G +V A+ G  L G   TF+ ++   L+ +  L RLR
Sbjct: 168 AIGAIAEQVKHLVLNGFKEVVFTGVDVTAY-GSDLPGSP-TFAQMIKRVLNLVPALKRLR 225

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
            ++    ++ D L +     + +MP+ H+ +Q+G D ILK M RRH      +   ++R+
Sbjct: 226 LSSIDVAEIDDELFELIAYSERIMPHFHISLQAGDDMILKRMKRRHNRANVIEFCRKLRA 285

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           +RP+++  +D I GFP ET + F  T  L+ +        F YS R GTP + M  QV +
Sbjct: 286 IRPEVSFGADIIAGFPTETPEMFENTRKLISEAELQYLHVFPYSEREGTPAARM-PQVPK 344

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422
           N++ ER   L+++ + Q   F    +GQ +E+L+E + 
Sbjct: 345 NIRKERAAILRQEGQNQLTEFFKKHIGQKVELLVENNN 382


>gi|218666627|ref|YP_002424637.1| MiaB-like tRNA modifying enzyme YliG, putative [Acidithiobacillus
           ferrooxidans ATCC 23270]
 gi|238065273|sp|B7J3M4|RIMO_ACIF2 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|218518840|gb|ACK79426.1| MiaB-like tRNA modifying enzyme YliG, putative [Acidithiobacillus
           ferrooxidans ATCC 23270]
          Length = 446

 Score =  176 bits (445), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 146/469 (31%), Positives = 220/469 (46%), Gaps = 56/469 (11%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P +    S GC     DS R+     ++GY  V    +AD++V+NTC   + A E+    
Sbjct: 8   PPKVGFVSLGCPKATVDSERILTQLRAEGYLLVGDYANADVVVVNTCGFIDAAVEESLEA 67

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRS-PIVNVVVGPQTYYRLPELLER 142
           +G         + E G   VVV GC+   EG + +R + P V  V GP     + + +  
Sbjct: 68  IGEA-------LDENGK--VVVTGCLGAREGGDFVRGAHPKVLAVTGPNQAGAVLDAIHA 118

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           A        TD  V  +  RL+             A+L I EGC++ C+FC++P  RG  
Sbjct: 119 ALPPAHDPYTDL-VPPQGLRLTPPH---------YAYLKISEGCNQSCSFCIIPSMRGKL 168

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE-----------KCTFSDLL 251
           +SR+   ++ EA  L+  G  E+ ++ Q+  A+   G+D +           K   +DL 
Sbjct: 169 VSRAPDDILREAEALVAGGAKELLVISQDTGAY---GVDRKYRTAFHNGRPLKTRITDLC 225

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
            +L E+   VRL Y   +P       + A G    ++PYL +P+Q GS RILK+M RR  
Sbjct: 226 AALGELGVWVRLHYVYPYPHIDELLPLMAEGK---ILPYLDVPLQHGSPRILKAM-RRPA 281

Query: 312 AYEYRQIIDRI---RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
           A E  + +DRI   R   PD+ I S FIVGFPGETD DF   +D +      +   F YS
Sbjct: 282 AAE--KTLDRILGWRQAVPDLIIRSTFIVGFPGETDADFAELLDFLRAAELDRVGCFAYS 339

Query: 369 PRLGTPGSNMLEQVDENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK 425
              G P + +   V E VK ER    + +Q+ +  Q++      VGQ   VL++   +  
Sbjct: 340 AVEGAPANAIAGAVPEPVKEERRAAFMAVQEAISRQRLQRR---VGQRQRVLVDAMAR-G 395

Query: 426 GKLVGRS----PWLQSVVLNSKNHN--IGDIIKVRITDVKISTLYGELV 468
           G+++ RS    P +  VV   K     +GD ++V IT      LYG +V
Sbjct: 396 GRVIARSASDAPEIDGVVHLGKAAGLQVGDWVEVAITRADAHDLYGMVV 444


>gi|71066091|ref|YP_264818.1| ribosomal protein S12 methylthiotransferase [Psychrobacter arcticus
           273-4]
 gi|123775584|sp|Q4FRH4|RIMO_PSYA2 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|71039076|gb|AAZ19384.1| conserved hypothetical protein [Psychrobacter arcticus 273-4]
          Length = 525

 Score =  176 bits (445), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 132/425 (31%), Positives = 214/425 (50%), Gaps = 41/425 (9%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  FV S GC   + DS R+       GY+  +  D ADL+V+NTC   E A ++    
Sbjct: 82  PKIGFV-SLGCPKALVDSERIITELSRDGYQVASDYDGADLVVVNTCGFIESAVQESLDA 140

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G   + KN +        V+V GC+ + E ++I    P V  V G   Y    + + RA
Sbjct: 141 IGEAIS-KNGK--------VIVTGCLGK-EADKIREMHPAVLAVTGAHAY----DEVIRA 186

Query: 144 RFGKRVVDTDYSVEDKFE-RLSIV-DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
                V   D S++  ++ ++ ++ + G        A+L I EGC+  CTFC++P  RG 
Sbjct: 187 -VALHVPKPDRSLDASYDPKIDLINEAGIKLTPSHYAYLKISEGCNHRCTFCIIPSLRGD 245

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDL 250
            +SR +  V++EA  L   GV E+ ++ Q+ +A           W G  L   K  F DL
Sbjct: 246 LVSRPIDSVMNEALALKKAGVKELLIISQDTSAYGLDLKYKTSFWNGMPL---KSKFYDL 302

Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
             +L+++   VRL Y   +P    D +++  G+   L+PYL +P Q  S RILK+M R  
Sbjct: 303 CQALNDLGIWVRLHYVYPYPH--VDKVVELMGEKK-LLPYLDIPFQHASHRILKAMKRPA 359

Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370
            +      I   R + PDI I S F+VGFPGET++DF+  +D + +    +  +F YS  
Sbjct: 360 HSENTLARIHAWREICPDIVIRSTFVVGFPGETEEDFQCLLDWLVEARLDRVGAFTYSEV 419

Query: 371 LGTPGSNMLEQVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK 427
            G   +++   V E+VK    ERL+ LQ+ +  Q++      +G+ + VL+++  +E+G 
Sbjct: 420 EGAVANDLPNHVPEDVKQERYERLMTLQQDISAQKLQEK---IGKTLMVLVDEIDREEGV 476

Query: 428 LVGRS 432
            + RS
Sbjct: 477 AICRS 481


>gi|114769928|ref|ZP_01447538.1| MiaB-like tRNA modifying enzyme [alpha proteobacterium HTCC2255]
 gi|114549633|gb|EAU52515.1| MiaB-like tRNA modifying enzyme [alpha proteobacterium HTCC2255]
          Length = 420

 Score =  176 bits (445), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 136/451 (30%), Positives = 223/451 (49%), Gaps = 53/451 (11%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  M+++  + G +        +++V+NTC +    AE V      IR L
Sbjct: 8   TQGCRLNAYETEAMKELADAAGLK--------NIVVVNTCAV---TAEAVRKSKQEIRKL 56

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG------PQTYYRL---PELLE 141
           +    ++  +  ++V GC AQ E +     S  V++V+G        T+  +   P+ + 
Sbjct: 57  R----RDNPNSQMIVTGCAAQIEPKTFSEMSE-VDLVIGNTEKMDSNTWNEISNKPDFVG 111

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           +    K +VD   SV++    L  +DG   R R   A++ +Q GCD  CTFC++PY RG 
Sbjct: 112 KTE--KVMVDDIMSVKNTAGHL--IDGFGTRSR---AYVQVQNGCDHRCTFCIIPYGRGN 164

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT-FSDLLYS-LSEIKG 259
             S     VVD+ ++L+D G  E+ L G ++ +W   G D        DL+   L  +  
Sbjct: 165 SRSVPAGVVVDQIKRLVDTGYNEVVLTGVDITSW---GADLPMVPKLGDLVQRILKLVPD 221

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           L RLR ++    +    LI A      LMP+LHL +Q+G D ILK M RRH   +  +  
Sbjct: 222 LPRLRISSIDSIEADPALIDAISSEMRLMPHLHLSLQAGDDMILKRMKRRHLRDDAIEFC 281

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            ++RSVRP+I   +D I GFP ET++ F  +++L+ + G      F +SPR GTP + M 
Sbjct: 282 SKMRSVRPNIVYGADIIAGFPTETEEMFENSLNLIKECGLTWLHVFPFSPREGTPAARM- 340

Query: 380 EQVDENVKAERL----LCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWL 435
            Q+D ++  ER     LC +  +++       A +G    VLIE       + +GR+   
Sbjct: 341 PQMDRSIIKERAARLRLCGELAVKDHLA----AQIGLEHNVLIE------NERMGRTEGF 390

Query: 436 QSVVLNSKNHNIGDIIKVRITDVKISTLYGE 466
             V+ N K+   G I+  +I D  +  L  +
Sbjct: 391 TEVLFN-KDQIKGSIVNAKIVDKSLKQLIAQ 420


>gi|154251867|ref|YP_001412691.1| MiaB-like tRNA modifying enzyme [Parvibaculum lavamentivorans DS-1]
 gi|154155817|gb|ABS63034.1| MiaB-like tRNA modifying enzyme [Parvibaculum lavamentivorans DS-1]
          Length = 420

 Score =  175 bits (444), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 132/430 (30%), Positives = 204/430 (47%), Gaps = 35/430 (8%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           ++GC++N Y+S  M      +G+     +D A  IV NTC +  +A  +    + + R  
Sbjct: 9   TFGCRLNAYESEVM------RGHAEAAGLDGA--IVFNTCAVTAEAERQARQAIRKAR-- 58

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGP----QTYYRLPELLERARFG 146
                +E     ++V GC AQ   +     +  V++V+G     Q     P L       
Sbjct: 59  -----RENPQARIIVTGCAAQVNPDAFAEMTE-VDLVIGNEEKLQAASWQPALALHTNER 112

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
            RV D     E       +V G   R R   AF+ +Q GCD  CTFC++PY RG   S  
Sbjct: 113 VRVNDIMSVTETAGH---LVGGLEGRAR---AFVQVQNGCDHRCTFCIIPYGRGPSRSVP 166

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
             +VV++ R L+ NG  E+ L G ++ ++ G  L G     +     L  +  L RLR +
Sbjct: 167 AGEVVNQVRTLVGNGYREVVLTGVDMTSY-GGDLPGRPSLGNLARRILKLVPELERLRLS 225

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
           +    +  D L++   + + LMP+LHL +QSG D ILK M RRH   +  +  + +R  R
Sbjct: 226 SIDSIEADDELMRLIAEEERLMPHLHLSLQSGDDMILKRMKRRHLREDSIRFCEDVRKAR 285

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           PDI   +DFI GFP ETD+ F  TM LVD+ G      F +SPR GTP + M  QV   +
Sbjct: 286 PDIIFGADFIAGFPTETDEMFENTMRLVDECGLTWLHVFPFSPRPGTPAAKM-PQVSREM 344

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHN 446
              R   L+ K  E+  +  ++ +G    VL+E         +GR+     V + ++   
Sbjct: 345 GKARAERLRMKGAERVRAHLESGLGATRPVLMET------PTLGRTHQFTPVRV-TEAAT 397

Query: 447 IGDIIKVRIT 456
            G+I+ +R+ 
Sbjct: 398 AGEILPLRLA 407


>gi|238920449|ref|YP_002933964.1| ribosomal protein S12 methylthiotransferase [Edwardsiella ictaluri
           93-146]
 gi|238870018|gb|ACR69729.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
          Length = 441

 Score =  175 bits (444), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 131/456 (28%), Positives = 220/456 (48%), Gaps = 46/456 (10%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ DS R+     ++GY  V + +DADL+++NTC   + A ++    +G     
Sbjct: 14  SLGCPKNLVDSERILTELRTEGYLVVPTYEDADLVIVNTCGFIDSAVQESLEAIGEA--- 70

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               + E G   V+V GC+   E + I    P V  + GP +Y ++          K V 
Sbjct: 71  ----LHENGK--VIVTGCLGAKENQ-IREVHPKVLEISGPHSYEQV-----LHHVHKYVA 118

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
              +   + F  L + + G        A+L I EGC+  C FC++P  RG   SRS+  V
Sbjct: 119 KPQH---NPFTSL-VPEQGVKLTPKHFAYLKISEGCNHRCAFCIIPSLRGDLESRSIGSV 174

Query: 211 VDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYSLSEIKG 259
           +DEA++L D+GV E+ ++ Q+  A           W G+ +   K +   L   L+ +  
Sbjct: 175 LDEAKRLADSGVRELLVISQDTAAYGADIQHRTGFWNGQPV---KTSMLSLCEQLATLGV 231

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
            +RL Y   +P       + A G L   +PYL +P+Q  S RILK M R        + I
Sbjct: 232 WIRLHYVYPYPHVDDVIPLMAQGKL---LPYLDIPLQHASPRILKLMKRPGAVERTLERI 288

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            R R + P + + S FIVGFPGET++DF+  +D + +    +   F+YSP  G   + + 
Sbjct: 289 KRWREICPQLTLRSTFIVGFPGETEEDFQMLLDFLREARLDRVGCFQYSPVEGAAANELP 348

Query: 380 EQVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPW 434
           +QV + +K    +R + LQ+++  +++      VG  + V+I++   E   G+ +  +P 
Sbjct: 349 DQVPDEIKQARFDRFMQLQQQISAERLQEK---VGLTLPVIIDEVDGEGAIGRSMADAPE 405

Query: 435 LQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468
           +  VV  +   ++  GDI+ V I +     ++G L 
Sbjct: 406 IDGVVYLNGERSVKPGDIVNVTIENADEYDMWGSLA 441


>gi|15835786|ref|NP_300310.1| hypothetical protein CPj0251 [Chlamydophila pneumoniae J138]
 gi|8978624|dbj|BAA98461.1| conserved hypothetical protein [Chlamydophila pneumoniae J138]
          Length = 500

 Score =  175 bits (444), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 114/416 (27%), Positives = 200/416 (48%), Gaps = 20/416 (4%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ DS  M  +    GYE  N ++DAD ++LNTC   + A ++   +L  + ++
Sbjct: 54  SLGCSRNLVDSEVMLGILLKAGYESTNEIEDADYLILNTCAFLKSARDEAKDYLDHLIDV 113

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
           K    K      ++V GC+     +E+      ++ ++G      +   +E    G+++ 
Sbjct: 114 KKENAK------IIVTGCMTSNHKDELKPWMSHIHYLLGSGDVENILSAIESRESGEKIS 167

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
              Y    +  R       Y       A+L + EGC K C FC++P  +G   S+ L Q+
Sbjct: 168 AKSYIEMGEVPRQLSTPKHY-------AYLKVAEGCRKRCAFCIIPSIKGKLRSKPLDQI 220

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT-FSDLLYSLSEIKGLVRLRYTTSH 269
           + E R L++  V EI L+ Q++  + GK L  ++ +    LL+ L +  G   LR    +
Sbjct: 221 LKEFRILVNKSVKEIILIAQDLGDY-GKDLSTDRSSQLESLLHELLKEPGDYWLRMLYLY 279

Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329
           P ++SD +I        L+PY+ +P+Q  +DRILK M R  +  +    ++++R+  P +
Sbjct: 280 PDEVSDGIIDLMQSNPKLLPYVDIPLQHINDRILKQMRRTTSREQILGFLEKLRAKVPQV 339

Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAE 389
            I S  IVGFPGET ++F+   D + +        F YS    TP + + +Q+ E VK  
Sbjct: 340 YIRSSVIVGFPGETQEEFQELADFIGEGWIDNLGIFLYSQEANTPAAELPDQIPEKVKES 399

Query: 390 RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-----GRSPWLQSVVL 440
           RL  L +  +      N   +G+ IE +I+ +  E   L+     G++P +   ++
Sbjct: 400 RLKILSQIQKRNVDKHNQKLIGEKIEAVIDNYHPETNLLLTARFYGQAPEVDPCII 455


>gi|326800449|ref|YP_004318268.1| MiaB-like tRNA modifying enzyme [Sphingobacterium sp. 21]
 gi|326551213|gb|ADZ79598.1| MiaB-like tRNA modifying enzyme [Sphingobacterium sp. 21]
          Length = 439

 Score =  175 bits (444), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 117/400 (29%), Positives = 200/400 (50%), Gaps = 13/400 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +R    + GC++N  ++  +  +F   GY+ V   + AD+ V+NTC + + A +K     
Sbjct: 3   KRVAFYTLGCKLNFSETSSIGRIFQDAGYQTVPFNERADVYVINTCSVTDNADKKC---- 58

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
              R +    +K      + + GC AQ +  EI    P V++V+G    + + E +    
Sbjct: 59  ---RKVVKEALKYSPQAYITIVGCYAQLKPREIAE-IPGVDMVLGAAEKFNIIEHINDLT 114

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
             K+ +  +  +E+    +     G +R R    FL +Q+GCD  CTFC +P  RG   S
Sbjct: 115 KQKKAIIHNAPIEETNVFVPAFSFG-DRTR---TFLKVQDGCDYSCTFCTIPLARGASRS 170

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
            ++  +V +A+ +  +GV EI L G N+  + G      +  F DL+ +L  + G+ R R
Sbjct: 171 GTIESLVKQAKDIAASGVKEIVLTGVNIGDF-GMRQGQREDRFLDLVKALDAVDGIDRFR 229

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
            ++  P  +S+ +I         +P+ H+P+QSGS++IL  M RR+    Y + + RI+S
Sbjct: 230 ISSIEPNLLSNEIIDFVASSKRFVPHFHMPLQSGSNKILGLMRRRYKRELYAERVKRIKS 289

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           + PD  I  D IVGFPGET +DF  T + ++ +  +    F YS R  T  S M   V  
Sbjct: 290 LMPDCCIGVDVIVGFPGETREDFLQTYEFLNDLDISYLHVFTYSERENTIASQMEGAVPG 349

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE 424
           + +++R   L     +++ +F  + +G  +EVL E   KE
Sbjct: 350 SARSDRSKMLHILSEKKRRAFYVSQLGNEMEVLFESDVKE 389


>gi|238065378|sp|Q9Z8T3|RIMO_CHLPN RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
          Length = 468

 Score =  175 bits (444), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 114/416 (27%), Positives = 200/416 (48%), Gaps = 20/416 (4%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ DS  M  +    GYE  N ++DAD ++LNTC   + A ++   +L  + ++
Sbjct: 22  SLGCSRNLVDSEVMLGILLKAGYESTNEIEDADYLILNTCAFLKSARDEAKDYLDHLIDV 81

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
           K    K      ++V GC+     +E+      ++ ++G      +   +E    G+++ 
Sbjct: 82  KKENAK------IIVTGCMTSNHKDELKPWMSHIHYLLGSGDVENILSAIESRESGEKIS 135

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
              Y    +  R       Y       A+L + EGC K C FC++P  +G   S+ L Q+
Sbjct: 136 AKSYIEMGEVPRQLSTPKHY-------AYLKVAEGCRKRCAFCIIPSIKGKLRSKPLDQI 188

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT-FSDLLYSLSEIKGLVRLRYTTSH 269
           + E R L++  V EI L+ Q++  + GK L  ++ +    LL+ L +  G   LR    +
Sbjct: 189 LKEFRILVNKSVKEIILIAQDLGDY-GKDLSTDRSSQLESLLHELLKEPGDYWLRMLYLY 247

Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329
           P ++SD +I        L+PY+ +P+Q  +DRILK M R  +  +    ++++R+  P +
Sbjct: 248 PDEVSDGIIDLMQSNPKLLPYVDIPLQHINDRILKQMRRTTSREQILGFLEKLRAKVPQV 307

Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAE 389
            I S  IVGFPGET ++F+   D + +        F YS    TP + + +Q+ E VK  
Sbjct: 308 YIRSSVIVGFPGETQEEFQELADFIGEGWIDNLGIFLYSQEANTPAAELPDQIPEKVKES 367

Query: 390 RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-----GRSPWLQSVVL 440
           RL  L +  +      N   +G+ IE +I+ +  E   L+     G++P +   ++
Sbjct: 368 RLKILSQIQKRNVDKHNQKLIGEKIEAVIDNYHPETNLLLTARFYGQAPEVDPCII 423


>gi|118443956|ref|YP_878198.1| tRNA modifying protein [Clostridium novyi NT]
 gi|238065369|sp|A0Q0P6|RIMO_CLONN RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|118134412|gb|ABK61456.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Clostridium novyi
           NT]
          Length = 444

 Score =  175 bits (444), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 129/445 (28%), Positives = 229/445 (51%), Gaps = 42/445 (9%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYER---VNSMDDADLIVLNTCHIREKAAEKVYSFLGRI 87
           S GC  N  DS    ++   +  E+   VN  + AD+I++NTC   E + ++    +   
Sbjct: 10  SLGCDKNRIDS----ELLLGKLNEKNDIVNDPNKADIIIVNTCGFIESSKQESIDTI--- 62

Query: 88  RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147
             L+ ++ KE    +++  GC+ Q   +E+L   P +++++G   Y  +   ++   F +
Sbjct: 63  --LEMAKYKEENCKMIIATGCLTQRYSKELLELIPEIDIMLGVNDYANIQNYIDDF-FNE 119

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVT-----AFLTIQEGCDKFCTFCVVPYTRGIE 202
                +   + K+  +SI +G    KR +T     A++ I EGC+  CT+C++P  RG  
Sbjct: 120 H----NKICQCKYSDISINEG----KRILTTAKHMAYIRISEGCNNLCTYCIIPKIRGKY 171

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SRS+  +++EA++L + GV E+ L+GQ+  A  G  L  E    S LL  LS I+ +  
Sbjct: 172 RSRSIESIINEAKELANMGVKELILVGQDT-AIYGSDLYKEN-RLSQLLRELSNIEDIEW 229

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R   ++P +++D LI+   + D +  YL +P+Q  S+ +LK MNR+ +      I D I
Sbjct: 230 IRILYTYPEEITDELIEEIKNNDKVCKYLDIPIQHISNTVLKRMNRKSSK---ELITDNI 286

Query: 323 RSVRPDI---AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
           + +R +I    + +  IVGFPGET+D+F    + V++I +     FKYS    T  + M 
Sbjct: 287 KKMRKEIDGLCLRTSIIVGFPGETEDEFNELKEFVEEIKFDNLGVFKYSQEEDTAAARMK 346

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWL 435
           +QV E++K ERL  +    +      N   + ++ +VL+E  G+     +GR+    P +
Sbjct: 347 DQVSEDLKEERLATIMSIQQNVSSKINKNKLEKVYKVLVE--GQNDKYYIGRNYQMVPEI 404

Query: 436 QSVVL--NSKNHNIGDIIKVRITDV 458
              +     K  N+G+ + V+ITD 
Sbjct: 405 DGAIFFKCDKILNVGEFVYVKITDT 429


>gi|16752786|ref|NP_445054.1| hypothetical protein CP0510 [Chlamydophila pneumoniae AR39]
 gi|7189427|gb|AAF38338.1| conserved hypothetical protein [Chlamydophila pneumoniae AR39]
          Length = 503

 Score =  175 bits (444), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 114/409 (27%), Positives = 197/409 (48%), Gaps = 20/409 (4%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ DS  M  +    GYE  N ++DAD ++LNTC   + A ++   +L  + ++
Sbjct: 57  SLGCSRNLVDSEVMLGILLKAGYESTNEIEDADYLILNTCAFLKSARDEAKDYLDHLIDV 116

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
           K    K      ++V GC+     +E+      ++ ++G      +   +E    G+++ 
Sbjct: 117 KKENAK------IIVTGCMTSNHKDELKPWMSHIHYLLGSGDVENILSAIESRESGEKIS 170

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
              Y    +  R       Y       A+L + EGC K C FC++P  +G   S+ L Q+
Sbjct: 171 AKSYIEMGEVPRQLSTPKHY-------AYLKVAEGCRKRCAFCIIPSIKGKLRSKPLDQI 223

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT-FSDLLYSLSEIKGLVRLRYTTSH 269
           + E R L++  V EI L+ Q++  + GK L  ++ +    LL+ L +  G   LR    +
Sbjct: 224 LKEFRILVNKSVKEIILIAQDLGDY-GKDLSTDRSSQLESLLHELLKEPGDYWLRMLYLY 282

Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329
           P ++SD +I        L+PY+ +P+Q  +DRILK M R  +  +    ++++R+  P +
Sbjct: 283 PDEVSDGIIDLMQSNPKLLPYVDIPLQHINDRILKQMRRTTSREQILGFLEKLRAKVPQV 342

Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAE 389
            I S  IVGFPGET ++F+   D + +        F YS    TP + + +Q+ E VK  
Sbjct: 343 YIRSSVIVGFPGETQEEFQELADFIGEGWIDNLGIFLYSQEANTPAAELPDQIPEKVKES 402

Query: 390 RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-----GRSP 433
           RL  L +  +      N   +G+ IE +I+ +  E   L+     G++P
Sbjct: 403 RLKILSQIQKRNVDKHNQKLIGEKIEAVIDNYHPETNLLLTARFYGQAP 451


>gi|256822063|ref|YP_003146026.1| MiaB-like tRNA modifying enzyme [Kangiella koreensis DSM 16069]
 gi|256795602|gb|ACV26258.1| MiaB-like tRNA modifying enzyme [Kangiella koreensis DSM 16069]
          Length = 447

 Score =  175 bits (444), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 119/395 (30%), Positives = 200/395 (50%), Gaps = 22/395 (5%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           + + GC++N  +     + F   G    + +D ADLIVLNTC +  +AA K    + R  
Sbjct: 5   LSALGCRLNEAELQNWANSFQRLGLSLTSEVDAADLIVLNTCAVTAEAARKSRQTVRRFH 64

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
                  K       VV GC A  E EE+ +   +  VVV          L+E+A   K+
Sbjct: 65  RANPQARK-------VVTGCYASLEPEEVAQIMGVDLVVVNEDK----DALVEQA---KQ 110

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           ++D     E   E         NR+R   AF+ IQ+GC   CT+C+V   RG E SR++ 
Sbjct: 111 LLDIPAMPEFATEPGESALFARNRER---AFIKIQDGCRYRCTYCIVTVARGEERSRTIQ 167

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
            +VDE  +L   GV EI L G +V  + G  +D    +  +L+ ++     + R+R+ + 
Sbjct: 168 DLVDEVNQLHAEGVQEIVLAGVHVGGY-GSDIDS---SLYELVETILRDTDMPRIRFASV 223

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
            P D+ +   +   +   LMP++HLP+QSG+D +L+ M+RR     + +++++ ++    
Sbjct: 224 EPWDLGENFFELFAN-PRLMPHMHLPIQSGADTVLRRMSRRCKTSSFSELVNQAKTQVAG 282

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
             +++D IVGFPGETD++F  TM  ++++G+     F YS R GT  + +  ++ + +K 
Sbjct: 283 FNVTTDVIVGFPGETDEEFELTMQYIEEVGFGHIHIFTYSDREGTKAARLPGKITKEIKK 342

Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK 423
           ER   L +     +V+  +  VG I+ VL E   +
Sbjct: 343 ERSHRLHELAARLKVAELERQVGLIVPVLWESSNQ 377


>gi|198282274|ref|YP_002218595.1| 30S ribosomal protein S12 methylthiotransferase [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|238065274|sp|B5EK28|RIMO_ACIF5 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|198246795|gb|ACH82388.1| MiaB-like tRNA modifying enzyme YliG [Acidithiobacillus
           ferrooxidans ATCC 53993]
          Length = 442

 Score =  175 bits (444), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 144/464 (31%), Positives = 217/464 (46%), Gaps = 56/464 (12%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V S GC     DS R+     ++GY  V    +AD++V+NTC   + A E+    +G   
Sbjct: 9   VVSLGCPKATVDSERILTQLRAEGYLLVGDYANADVVVVNTCGFIDAAVEESLEAIGEA- 67

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRS-PIVNVVVGPQTYYRLPELLERARFGK 147
                 + E G   VVV GC+   EG + +R + P V  V GP     + + +  A    
Sbjct: 68  ------LDENGK--VVVTGCLGAREGGDFVRGAHPKVLAVTGPNQAGAVLDAIHAAL--- 116

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
                     D +  L +   G        A+L I EGC++ C+FC++P  RG  +SR+ 
Sbjct: 117 ------PPAHDPYTDL-VPPQGLRLTPPHYAYLKISEGCNQSCSFCIIPSMRGKLVSRAP 169

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE-----------KCTFSDLLYSLSE 256
             ++ EA  L+  G  E+ ++ Q+  A+   G+D +           K   +DL  +L E
Sbjct: 170 DDILREAEALVAGGAKELLVISQDTGAY---GVDRKYRTAFHNGRPLKTRITDLCAALGE 226

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           +   VRL Y   +P       + A G    ++PYL +P+Q GS RILK+M RR  A E  
Sbjct: 227 LGVWVRLHYVYPYPHIDELLPLMAEGK---ILPYLDVPLQHGSPRILKAM-RRPAAAE-- 280

Query: 317 QIIDRI---RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
           + +DRI   R   PD+ I S FIVGFPGETD DF   +D +      +   F YS   G 
Sbjct: 281 KTLDRILGWRQAVPDLIIRSTFIVGFPGETDADFAELLDFLRAAELDRVGCFAYSAVEGA 340

Query: 374 PGSNMLEQVDENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG 430
           P + +   V E VK ER    + +Q+ +  Q++      VGQ   VL++   +  G+++ 
Sbjct: 341 PANAIAGAVPEPVKEERRAAFMAVQEAISRQRLQRR---VGQRQRVLVDAMAR-GGRVIA 396

Query: 431 RS----PWLQSVVLNSKNHN--IGDIIKVRITDVKISTLYGELV 468
           RS    P +  VV   K     +GD ++V IT      LYG +V
Sbjct: 397 RSASDAPEIDGVVHLGKAAGLQVGDWVEVAITRADAHDLYGMVV 440


>gi|239947306|ref|ZP_04699059.1| conserved hypothetical protein [Rickettsia endosymbiont of Ixodes
           scapularis]
 gi|239921582|gb|EER21606.1| conserved hypothetical protein [Rickettsia endosymbiont of Ixodes
           scapularis]
          Length = 423

 Score =  175 bits (444), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 120/400 (30%), Positives = 200/400 (50%), Gaps = 37/400 (9%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V ++GC++N+Y+S  +       G + V         + NTC +  KAAEK      + R
Sbjct: 14  VVTFGCRLNIYESEIIRKNLELSGIDNV--------AIFNTCAVT-KAAEK------QAR 58

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ-----TYYRLPELLERA 143
                  K   DL ++V GC AQ    ++    P V+ V+G +      YY++ +     
Sbjct: 59  QAICKAKKNNPDLKIIVTGCSAQT-SPQMYGNMPEVDKVIGNEEKLLPNYYQITD----- 112

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
              K  V+   SV++    L     G +R     AF+ +Q GCD FCTFC++PY RG   
Sbjct: 113 --EKITVNDIMSVKETASHLVSSFDGKSR-----AFIQVQNGCDHFCTFCIIPYGRGKSR 165

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS-LSEIKGLVR 262
           S ++  + ++ + L+ NG  E+   G +V A+ G  L G   TF+ ++   L+ +  L R
Sbjct: 166 SVAIGAIAEQVKHLVLNGFKEVVFTGVDVTAY-GSDLPGSP-TFAQMIKRVLNLVPELKR 223

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LR ++    ++ D L +     + +MP+ H+ +Q+G D ILK M RRH      +   ++
Sbjct: 224 LRLSSIDVAEIDDELFELIAYSERIMPHFHISLQAGDDMILKRMKRRHNRANVIEFCRKL 283

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R++RP+++  +D I GFP ET + F  T  L+ +        F YS R GTP + M  QV
Sbjct: 284 RAIRPEVSFGADIIAGFPTETPEMFENTRKLISEAELQYLHVFPYSEREGTPAARM-PQV 342

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422
            +N++ ER   L+++ + Q   F    +GQ +E+L+E + 
Sbjct: 343 PKNIRKERAEILRQEGQNQLTEFFKKHIGQKVELLVENNN 382


>gi|15618175|ref|NP_224460.1| hypothetical protein CPn0251 [Chlamydophila pneumoniae CWL029]
 gi|33241593|ref|NP_876534.1| hypothetical protein CpB0258 [Chlamydophila pneumoniae TW-183]
 gi|4376526|gb|AAD18404.1| conserved hypothetical protein [Chlamydophila pneumoniae CWL029]
 gi|33236101|gb|AAP98191.1| hypothetical protein CpB0258 [Chlamydophila pneumoniae TW-183]
          Length = 500

 Score =  175 bits (444), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 114/416 (27%), Positives = 200/416 (48%), Gaps = 20/416 (4%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ DS  M  +    GYE  N ++DAD ++LNTC   + A ++   +L  + ++
Sbjct: 54  SLGCSRNLVDSEVMLGILLKAGYESTNEIEDADYLILNTCAFLKSARDEAKDYLDHLIDV 113

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
           K    K      ++V GC+     +E+      ++ ++G      +   +E    G+++ 
Sbjct: 114 KKENAK------IIVTGCMTSNHKDELKPWMSHIHYLLGSGDVENILSAIESRESGEKIS 167

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
              Y    +  R       Y       A+L + EGC K C FC++P  +G   S+ L Q+
Sbjct: 168 AKSYIEMGEVPRQLSTPKHY-------AYLKVAEGCRKRCAFCIIPSIKGKLRSKPLDQI 220

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT-FSDLLYSLSEIKGLVRLRYTTSH 269
           + E R L++  V EI L+ Q++  + GK L  ++ +    LL+ L +  G   LR    +
Sbjct: 221 LKEFRILVNKSVKEIILIAQDLGDY-GKDLSTDRSSQLESLLHELLKEPGDYWLRMLYLY 279

Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329
           P ++SD +I        L+PY+ +P+Q  +DRILK M R  +  +    ++++R+  P +
Sbjct: 280 PDEVSDGIIDLMQSNPKLLPYVDIPLQHINDRILKQMRRTTSREQILGFLEKLRAKVPQV 339

Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAE 389
            I S  IVGFPGET ++F+   D + +        F YS    TP + + +Q+ E VK  
Sbjct: 340 YIRSSVIVGFPGETQEEFQELADFIGEGWIDNLGIFLYSQEANTPAAELPDQIPEKVKES 399

Query: 390 RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-----GRSPWLQSVVL 440
           RL  L +  +      N   +G+ IE +I+ +  E   L+     G++P +   ++
Sbjct: 400 RLKILSQIQKRNVDKHNQKLIGEKIEAVIDNYHPETNLLLTARFYGQAPEVDPCII 455


>gi|85860140|ref|YP_462342.1| tRNA 2-methylthioadenosine synthase -like protein [Syntrophus
           aciditrophicus SB]
 gi|85723231|gb|ABC78174.1| tRNA 2-methylthioadenosine synthase -like protein [Syntrophus
           aciditrophicus SB]
          Length = 451

 Score =  175 bits (444), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 123/447 (27%), Positives = 221/447 (49%), Gaps = 23/447 (5%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           + + GC++N Y+S  + +    +GY  V     AD  ++NTC +  +   +        R
Sbjct: 21  IATLGCKVNQYESEGLGEALTRRGYTMVPFSSVADCYIINTCTVTARTNYQS-------R 73

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER---ARF 145
            +    I+   + ++VV GC AQ    EI    P V ++ G     ++P+L+ R    R 
Sbjct: 74  QIIRKAIRNNPEAVIVVTGCYAQTAPAEIAG-IPGVTLIAGHAEKDQIPDLIARLLKERL 132

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
             RV D   +   +F  L+        K    AFL IQ+GC+ +C++C++P  RG   S 
Sbjct: 133 EIRVGDIGQT--RQFSSLAAT----RFKDHTRAFLKIQDGCNAWCSYCIIPSARGRSRSL 186

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLR 264
           +   V+++   +   G  E+ L G ++ A+   G D   + +  DLL  + E   + RLR
Sbjct: 187 AEGSVLEQLAHMGRTGYREVVLTGIHLGAY---GQDFSPQSSLVDLLRKVEEQHPVERLR 243

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
            ++  P ++SD  I       +L P+LH+P+QSG D IL  M R +T   ++ +++++  
Sbjct: 244 LSSIEPTEISDDFIALLRQSALLCPHLHIPLQSGDDSILTRMKRHYTTSFFKDLLEKLCR 303

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             PD+AI  D I GFPGE +  F  T++L++ +  A    F YS R GTP + M +QV  
Sbjct: 304 AIPDLAIGIDVIAGFPGEGEAAFERTVELIESLPVAYLHVFPYSVRPGTPAAAMPDQVSP 363

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKGKLVGRS-PWLQSVVLNS 442
           + K +R   L+     ++ +F     G+ + VL+ E+  +  G   G S  +L  ++ N+
Sbjct: 364 DEKKKRAEILRTLGTRKREAFARRFHGRSLRVLVEERRERSSGLRKGFSGNYLPILMTNA 423

Query: 443 KNHNIGDIIKVRITDVKISTLYGELVV 469
               +  +++V+I ++  + + G ++ 
Sbjct: 424 DASQVNQLVQVQIENIDGTRISGRIMT 450


>gi|78777220|ref|YP_393535.1| MiaB-like tRNA modifying enzyme [Sulfurimonas denitrificans DSM
           1251]
 gi|78497760|gb|ABB44300.1| MiaB-like tRNA modifying enzyme [Sulfurimonas denitrificans DSM
           1251]
          Length = 415

 Score =  175 bits (443), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 125/443 (28%), Positives = 221/443 (49%), Gaps = 30/443 (6%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + ++ + K++GC+ N+YDS  M  M   + Y+   +  +AD++V+N+C +   A   V S
Sbjct: 1   MKKKVYFKTFGCRTNLYDSQVM--MSSLKEYDITENESEADVVVINSCTVTNGADSHVRS 58

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
           ++        S +++ G   + + GC A  +GE +L +  +  V  G     ++ E+L +
Sbjct: 59  YI--------SHVEKNGGAKIFLTGCGAHTKGESLLSQGRVAGVF-GQSEKVKIDEMLNK 109

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
                   D ++  E      S+VD    + R   AF+ IQEGC+  C++C++PY RG  
Sbjct: 110 DEPFYEPGDLNHIDE------SVVDDFIGKSR---AFIKIQEGCNFRCSYCIIPYVRGDA 160

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            S    +++++ R+L  NG  E  L G NV ++  K       + + L+  +S+I+G+ R
Sbjct: 161 RSMDEEKILEQIRRLARNGFGEFILTGTNVGSYGQKN----DSSIASLMKKISQIRGVRR 216

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R  +  P  ++D   K   D   L  +LH+ +Q  S +ILK MNRR+   + R++ + +
Sbjct: 217 IRVGSVEPIQINDEF-KEILDEPWLERHLHIALQHTSPQILKLMNRRNVYKQDRELFELL 275

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
            S     AI +DFI G PGE+   +   M  V ++      +F YS R  TP + M  +V
Sbjct: 276 SS--KGFAIGTDFITGHPGESSSLWSEAMRNVKELPLTHLHAFTYSKRDSTPSATMKPEV 333

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
              V  ERL  L+  ++E+  +F  A  G  ++VLIE   ++    +G       +V+ S
Sbjct: 334 SGAVAKERLHELESIVKEKNFAFRKAFRG-TLDVLIE--SQKDDFFIGYDQHFNKIVVRS 390

Query: 443 KNHNIGDIIKVRITDVKISTLYG 465
               +G+ I +   +VK  + YG
Sbjct: 391 DEDLLGNWINISDYEVKEESNYG 413


>gi|220924966|ref|YP_002500268.1| ribosomal protein S12 methylthiotransferase [Methylobacterium
           nodulans ORS 2060]
 gi|219949573|gb|ACL59965.1| MiaB-like tRNA modifying enzyme YliG [Methylobacterium nodulans ORS
           2060]
          Length = 437

 Score =  175 bits (443), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 142/464 (30%), Positives = 210/464 (45%), Gaps = 54/464 (11%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
            P+  FV S GC   + DS R+     ++GYE     D AD++++NTC   + A  +   
Sbjct: 4   APKISFV-SLGCPKALVDSERILTHLRAEGYELARKHDGADVVIVNTCGFLDSAKAESLQ 62

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +G     +N R        V+V GC+  A+ +EI  + P +  + GPQ Y  +   +  
Sbjct: 63  AIGEAMA-ENGR--------VIVTGCMG-AQPDEIRDKYPNLLAITGPQAYESVVAAVHE 112

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           A              D F  L    G     R   A+L I EGC+  CTFC++P  RG  
Sbjct: 113 AV---------PPAHDPFLDLVPPQGVKLTPRHY-AYLKISEGCNNRCTFCIIPSLRGDL 162

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGE-KCTFSDL 250
           +SR    V+ EA KL+  GV E+ ++ Q+ +A           WR    DGE +  F DL
Sbjct: 163 VSRPAGDVLREAEKLVKAGVKELLVISQDTSAYGVDLRYAPSPWR----DGEVRARFYDL 218

Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
             +L E    VRL Y   +P       + A G    ++PYL +P+Q  S  +LK M R  
Sbjct: 219 ARALGEFGVWVRLHYVYPYPHVDEVIPLMAEG---TVLPYLDMPLQHASPSVLKRMRR-- 273

Query: 311 TAYEYRQIIDRIRSVR---PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
                 ++++RIRS R   PD+AI S FIVGFPGET+ +F   +  + +    +   F Y
Sbjct: 274 -PANQEKMLERIRSWRSTCPDLAIRSTFIVGFPGETEAEFEELLAWLAEAKLERVGCFPY 332

Query: 368 SPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK 427
            P  G   + + E V E VKAER     +           A VG+ + V+I++ G    K
Sbjct: 333 EPVKGAAANGVAELVPEEVKAERYRRFMEAQAVISARLQKAKVGKRLPVIIDEAGPTVAK 392

Query: 428 LVGRSPWLQSVVLNS------KNHNIGDIIKVRITDVKISTLYG 465
             GRS +    +  S      +    GDI+ V+I       L+G
Sbjct: 393 --GRSKYDAPEIDGSVHVAFRRPVRAGDIVTVKIERADTYDLHG 434


>gi|67459038|ref|YP_246662.1| MiaB-like tRNA modifying enzyme [Rickettsia felis URRWXCal2]
 gi|67004571|gb|AAY61497.1| MiaB-like tRNA modifying enzyme [Rickettsia felis URRWXCal2]
          Length = 421

 Score =  175 bits (443), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 130/446 (29%), Positives = 218/446 (48%), Gaps = 44/446 (9%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V ++GC++N+Y+S  +       G + V         + NTC +  KAAEK      + R
Sbjct: 14  VVTFGCRLNIYESEIIRKNLELSGIDNV--------AIFNTCAV-TKAAEK------QAR 58

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ-----TYYRLPELLERA 143
                  K   DL ++V GC AQ    ++    P V+ V+G +     +YY++ +     
Sbjct: 59  QAIRKAKKNNPDLKIIVTGCSAQT-SPQMYGNMPEVDKVIGNEEKLLPSYYQITD----- 112

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
              K  V+   SV++    L     G +R     AF+ +Q GCD FCTFC++PY RG   
Sbjct: 113 --EKIAVNDIMSVKETAGHLVSSFDGKSR-----AFIQVQNGCDHFCTFCIIPYGRGKSR 165

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS-LSEIKGLVR 262
           S  +  +V + + L+ NG  E+   G +V A+ G  L G   TF+ ++   L+ +  L R
Sbjct: 166 SVPIGAIVSQVKHLVLNGFKEVVFTGVDVTAY-GSDLPGSP-TFAQMIKRVLNLVPELKR 223

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LR ++    ++ D L +     + +MP+ H+ +Q+G D ILK M RRH      +   ++
Sbjct: 224 LRLSSIDVAEIDDELFELIAYSERIMPHFHISLQAGDDMILKRMKRRHNRANVIEFCRKL 283

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R++RP+++  +D I GFP ET + F  T  L+ +        F YS R GTP + M  QV
Sbjct: 284 RAIRPEVSFGADIIAGFPTETPEMFENTRKLISEAELQYLHVFPYSEREGTPAARM-PQV 342

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
            + ++ ER   L+++ + Q   F    +GQ +E+L+E +       +  +     V L+ 
Sbjct: 343 PKAIRKERAEILRQEGQNQLSEFFKKHIGQKVELLVENNN------IAHTENFIPVKLD- 395

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
           K   IG I K ++  ++ + +  ELV
Sbjct: 396 KPLEIGQIFKAKLVGIEGNNMKCELV 421


>gi|306842918|ref|ZP_07475554.1| MiaB-like tRNA modifying enzyme [Brucella sp. BO2]
 gi|306286941|gb|EFM58461.1| MiaB-like tRNA modifying enzyme [Brucella sp. BO2]
          Length = 427

 Score =  175 bits (443), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 128/432 (29%), Positives = 212/432 (49%), Gaps = 34/432 (7%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           ++GC++N Y+S  M+    + G   + ++ D   I+ NTC +  +A  +    + + R  
Sbjct: 7   TFGCRLNTYESEVMKREADAAG---LGTLKDG-AIIFNTCAVTAEAVRQARQAIRKAR-- 60

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ------TYYRLPELLERAR 144
                +E  D  ++V GC AQ E +        V++V+G +      +Y  LP+     +
Sbjct: 61  -----RENPDARIIVTGCAAQTEADNFAAMGE-VDLVLGNEEKLKSNSYRMLPDFGVN-Q 113

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
           F K  V+    V +    +  VD    R R   AF+ +Q GCD  CTFC++PY RG   S
Sbjct: 114 FEKVRVNDIMEVRETASHM--VDAIEGRAR---AFVQVQNGCDHRCTFCIIPYGRGNSRS 168

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
             +  VVD+ ++L+ NG  E+ L G ++ ++ G  L G       +   L+++  L RLR
Sbjct: 169 VPMGAVVDQVKRLVGNGYAEVVLTGVDMTSY-GPDLPGNLRLGKLVKTVLAQVPDLQRLR 227

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
            ++    +  + L++A      LMP+LHL +Q+G D ILK M RRH   +  +    +R+
Sbjct: 228 LSSIDSIEADEDLMEAIASEKRLMPHLHLSLQAGDDMILKRMKRRHLRDDSIRFCQTVRA 287

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           +RPDI   +D I GFP ET++ F+ ++ +V++ G      F YSPR GTP + M  QV  
Sbjct: 288 LRPDIVFGADIIAGFPTETEEMFQNSLKIVEECGLTHLHVFPYSPREGTPAARM-PQVRR 346

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
            +  ER   L+ +         +A  G    +L+EK G      V R+       ++   
Sbjct: 347 EIVKERAARLRAEGDRAYEKHLNALHGTRQRLLVEKEG------VARTEGFTLAAVDQG- 399

Query: 445 HNIGDIIKVRIT 456
            N G+II+  +T
Sbjct: 400 -NAGEIIERIVT 410


>gi|51246808|ref|YP_066692.1| hypothetical protein DP2956 [Desulfotalea psychrophila LSv54]
 gi|50877845|emb|CAG37685.1| conserved hypothetical protein [Desulfotalea psychrophila LSv54]
          Length = 434

 Score =  175 bits (443), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 119/448 (26%), Positives = 219/448 (48%), Gaps = 19/448 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA-AEKVYSF 83
           +R  + + GC++N ++S    D     GY+ V   ++AD I++NTC +   A A+  +S 
Sbjct: 2   KRISITTLGCKVNQFESASFSDNLSQTGYKIVGHNEEADYIIINTCTVTAAASAQSRHSI 61

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVN---VVVGPQTYYRLPELL 140
              +R    ++I        ++ GC  +   EEI     +      ++G     ++ + +
Sbjct: 62  RHALRLSPTAKI--------IITGCYVEIGAEEIQAIEELRGREYHIIGNSCKDQVVDTI 113

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
            R+   ++++  D     +  RL +   G +R R    +L IQ+GC  FCT+C+VP+TRG
Sbjct: 114 -RSTGAEQLILGDIRKAKEICRLPVRHFG-DRTR---TYLRIQDGCQSFCTYCIVPFTRG 168

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
              S  L +V+ + R   + G  E  L G ++  W G  L G + TF+DLL  LS     
Sbjct: 169 PSRSLPLDEVIAQTRAFAEEGYQETVLTGIHIGEW-GHDLKGGE-TFTDLLDRLSAEVPQ 226

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
           +R R ++  P +++  +++       + P+LH+P+QSGSD+IL  MNR +    +  II+
Sbjct: 227 MRFRISSLEPTEINARILELIKTRANIFPHLHIPLQSGSDQILARMNRHYDTARFAGIIE 286

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
                 P++ I  D + GFPGE+++ F +    + K+ +     F YS R GT  +   +
Sbjct: 287 ACHQAIPNLCIGIDVLAGFPGESEEHFASAYSFLQKLDFTYLHVFPYSIRPGTKAAEFTD 346

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440
           QV  ++KA R+  L+     ++ +F    +G+ + V +E    + G L G +     V  
Sbjct: 347 QVASDIKAIRVKKLRALSDTKKSAFYQKQIGKTLPVQVEGKRAKDGLLRGYTDNYTLVHF 406

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
              +  +   + + + + +   +YG+LV
Sbjct: 407 AGADDLVRSSVDITLLENRDEYVYGKLV 434


>gi|254713652|ref|ZP_05175463.1| elongator protein 3 [Brucella ceti M644/93/1]
 gi|254715994|ref|ZP_05177805.1| elongator protein 3 [Brucella ceti M13/05/1]
 gi|261217762|ref|ZP_05932043.1| conserved hypothetical protein [Brucella ceti M13/05/1]
 gi|261321390|ref|ZP_05960587.1| conserved hypothetical protein [Brucella ceti M644/93/1]
 gi|260922851|gb|EEX89419.1| conserved hypothetical protein [Brucella ceti M13/05/1]
 gi|261294080|gb|EEX97576.1| conserved hypothetical protein [Brucella ceti M644/93/1]
          Length = 427

 Score =  175 bits (443), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 128/432 (29%), Positives = 212/432 (49%), Gaps = 34/432 (7%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           ++GC++N Y+S  M+    + G   + ++ D   I+ NTC +  +A  +    + + R  
Sbjct: 7   TFGCRLNTYESEVMKREADAAG---LGTLKDG-AIIFNTCAVTAEAVRQARQAIRKAR-- 60

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ------TYYRLPELLERAR 144
                +E  D  ++V GC AQ E +        V++V+G +      +Y  LP+  +  +
Sbjct: 61  -----RENPDARIIVTGCAAQTEADNFAAMGE-VDLVLGNEEKLKSNSYRMLPDF-DVNQ 113

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
           F K  V+    V +    +  VD    R R   AF+ +Q GCD  CTFC++PY RG   S
Sbjct: 114 FEKVRVNDIMEVRETASHM--VDAIEGRAR---AFVQVQNGCDHRCTFCIIPYGRGNSRS 168

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
             +  VVD+ ++L+ NG  E+ L G ++ ++ G  L G       +   L+++  L RLR
Sbjct: 169 VPMGAVVDQVKRLVGNGYAEVVLTGVDMTSY-GPDLPGNLRLGKLVKTVLAQVPDLQRLR 227

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
            ++    +  + L++A      LMP+LHL +Q+G D ILK M RRH   +  +     R+
Sbjct: 228 LSSIDSIEADEDLMEAIASEKRLMPHLHLSLQAGDDMILKRMKRRHLRDDSIRFCQTARA 287

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           +RPDI   +D I GFP ET++ F+ ++ +V++ G      F YSPR GTP + M  QV  
Sbjct: 288 LRPDIVFGADIIAGFPTETEEMFQNSLKIVEECGLTHLHVFPYSPREGTPAARM-PQVRR 346

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
            +  ER   L+ +         +A  G    +L+EK G      V R+       ++   
Sbjct: 347 EIVKERAARLRAEGDRAYEKHLNALHGTRQRLLVEKEG------VARTEGFTLAAVDQG- 399

Query: 445 HNIGDIIKVRIT 456
            N G+II+  +T
Sbjct: 400 -NAGEIIERIVT 410


>gi|307721185|ref|YP_003892325.1| MiaB-like tRNA modifying enzyme [Sulfurimonas autotrophica DSM
           16294]
 gi|306979278|gb|ADN09313.1| MiaB-like tRNA modifying enzyme [Sulfurimonas autotrophica DSM
           16294]
          Length = 424

 Score =  175 bits (443), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 126/435 (28%), Positives = 222/435 (51%), Gaps = 29/435 (6%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ + K++GC+ N+YDS  M  M   + YE   + D+AD+IV+N+C +   A   V S++
Sbjct: 11  KKVYFKTFGCRTNLYDSQVM--MSSLKEYEITQNEDEADVIVINSCTVTNGADTHVRSYI 68

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            +I        K  G   + + GC A  +GE +L+ + I + V G     ++  LL + +
Sbjct: 69  SQIE-------KNNGGAKLFLTGCGAHTKGESLLKENRI-HGVFGQSEKQKIDTLLAKEK 120

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
                 D ++ ++D      +VD    + R   AF+ IQEGC+  C++C++PY RG   S
Sbjct: 121 PFYEPGDLNH-IDD-----MVVDEFVGKSR---AFIKIQEGCNFRCSYCIIPYVRGDARS 171

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
              ++++++  +L  NG  E  L G NV ++   G D  K + + L+  +S+I+G+ R+R
Sbjct: 172 MDENRILEQVARLAINGFGEFILTGTNVGSY---GQD-TKTSLAKLMKKMSQIRGVRRIR 227

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
             +  P  ++D   K   D   +  ++H+ +Q  S  +LK MNRR+   + +++ + +  
Sbjct: 228 LGSVEPIQITDEF-KEILDEPWMEKHMHIALQHTSPTMLKLMNRRNVYKQDKELFELL-- 284

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
                AI +DFI G PGE++  +R  M     +      +F YS R GTP + M  +V+ 
Sbjct: 285 ADKGYAIGTDFITGHPGESEALWREAMINAKDLPLTHIHAFTYSKRDGTPSAVMKPEVNG 344

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
            +  ERL  LQ  + ++   F +A  G+ +EVLIE H  + G   G       +V+ S  
Sbjct: 345 KIAKERLHELQALIADKNFDFRNAYKGE-LEVLIESH--KDGLYHGFDQHFNKIVVESNE 401

Query: 445 HNIGDIIKVRITDVK 459
             +G+ I +   +VK
Sbjct: 402 DLVGNWINIEKYEVK 416


>gi|257455349|ref|ZP_05620584.1| conserved hypothetical protein [Enhydrobacter aerosaccus SK60]
 gi|257447311|gb|EEV22319.1| conserved hypothetical protein [Enhydrobacter aerosaccus SK60]
          Length = 495

 Score =  175 bits (443), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 128/437 (29%), Positives = 213/437 (48%), Gaps = 39/437 (8%)

Query: 10  VAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNT 69
            AH ++Q +     P+  FV S GC   + DS R+       GY+  +  D ADL+V+NT
Sbjct: 37  TAHQLAQDIATTKAPKIGFV-SLGCPKALVDSERIITELSRDGYQVASDYDGADLVVVNT 95

Query: 70  CHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG 129
           C   E A ++    +G     KN +        V+V GC+ + + E+I    P V  V G
Sbjct: 96  CGFIESAVQESLDAIGEAIT-KNGK--------VIVTGCLGK-DAEKIKTMHPAVLAVTG 145

Query: 130 PQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKF 189
              Y  +   +      K      Y  + K + ++  D G        A++ I EGC+  
Sbjct: 146 AHAYEEVVNAVSH-YVPKPAPSKTY--DPKIDLIN--DAGIKLTPKHYAYVKISEGCNHR 200

Query: 190 CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGK 238
           CTFC++P  RG  +SR +  ++ EA  L + GV E+ ++ Q+ +A           W G 
Sbjct: 201 CTFCIIPSFRGDLVSRPIDSIMTEAAALKNAGVKELLIISQDTSAYGVDLKYKTSFWNGM 260

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
            +   K  F D+  +L+ +   VRL Y   +P    D ++K   + D L+PYL +P Q  
Sbjct: 261 PI---KSKFYDMCEALNRLGIWVRLHYIYPYPH--VDAVVKLMSE-DKLLPYLDIPFQHA 314

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           S  +LK+M R   +    + I   RS+ PDI I S F+VGFPGET++DF   +D + +  
Sbjct: 315 SPNVLKAMKRPAHSENVLERIKTWRSICPDIVIRSTFVVGFPGETEEDFEYLLDWLKEAR 374

Query: 359 YAQAFSFKYSPRLGTPGSNMLEQVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIE 415
             +  +F YS   G   +++   V E +K    ERL+ LQ+++  ++++     VG+ ++
Sbjct: 375 LDRVGAFTYSEIEGAAANDLPNPVPEAIKQQRYERLMALQQQISAEKLAEK---VGKTLK 431

Query: 416 VLIEKHGKEKGKLVGRS 432
           VL+++  +E+   + RS
Sbjct: 432 VLVDEIDEEENIAICRS 448


>gi|89052810|ref|YP_508261.1| MiaB-like tRNA modifying enzyme [Jannaschia sp. CCS1]
 gi|88862359|gb|ABD53236.1| MiaB-like tRNA modifying enzyme [Jannaschia sp. CCS1]
          Length = 419

 Score =  175 bits (443), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 130/440 (29%), Positives = 209/440 (47%), Gaps = 53/440 (12%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  M +M    G E        + +V+NTC +  +A  K    + ++R  
Sbjct: 8   TLGCRLNAYETEAMREMTAQAGLE--------NAVVVNTCAVTAEAVRKARQEIRKLR-- 57

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG------PQTYYRLPELL---- 140
                ++     V+V GC AQ E          V++V+G      P+T+  +P       
Sbjct: 58  -----RDSPGAKVIVTGCAAQTE-PATFEAMEEVDLVLGNSEKMTPETWQAMPADFIGNT 111

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           E+ R     VD   SV +  + L  +DG   R R   A++ +Q GCD  CTFC++PY RG
Sbjct: 112 EKVR-----VDDIMSVTETAQHL--IDGFGTRSR---AYVQVQNGCDHRCTFCIIPYGRG 161

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
              S     VVD+ ++L+D G  E+ L G ++ +W G  L         ++  L  +  L
Sbjct: 162 NSRSVPAGVVVDQIKRLVDRGYNEVVLTGVDMTSW-GADLPAAPRLGDLVMRILKLVPDL 220

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            RLR ++    ++ D L++A      LMP+LHL +Q G D ILK M RRH   +     +
Sbjct: 221 PRLRISSIDSIEVDDALMQAIATEPRLMPHLHLSLQHGDDLILKRMKRRHLRDDAIAFCE 280

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
             R +RP+I   +D I GFP ET+  F+ ++ LV++        F YSPR GTP + M  
Sbjct: 281 EARRLRPEITFGADIIAGFPTETEAHFQNSVKLVEECDLTWLHVFPYSPREGTPAARMPA 340

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDAC----VGQIIEVLIEKHGKEKGKLVGRSPWLQ 436
                +KA       K+LR +  +  +A     +GQ+  +L+E         +GR+    
Sbjct: 341 VDGPTIKAR-----AKQLRAKGEAAVNAHLSKQIGQLHNILME------SPKIGRTEQFT 389

Query: 437 SVVLNSKNHNIGDIIKVRIT 456
            VV  +++   G+I+   IT
Sbjct: 390 EVVF-AEDQPEGEIVSAYIT 408


>gi|99034401|ref|ZP_01314414.1| hypothetical protein Wendoof_01000782 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
 gi|225630069|ref|YP_002726860.1| MiaB-like tRNA modifying enzyme [Wolbachia sp. wRi]
 gi|225592050|gb|ACN95069.1| MiaB-like tRNA modifying enzyme [Wolbachia sp. wRi]
          Length = 408

 Score =  175 bits (443), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 130/439 (29%), Positives = 222/439 (50%), Gaps = 36/439 (8%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V ++GC++N Y+S  +++       E V        +V+++C +  +A  +V   + +I 
Sbjct: 4   VITFGCRLNFYESELIKEALKKAKRENV--------VVVHSCAVTNEAERQVKQKIRKI- 54

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
             KN   KE     ++V GC  Q + E +    P V+ V+G Q   +    L       +
Sbjct: 55  -YKNDPNKE-----IIVVGCAVQLDPE-VYSSIPGVSKVLGNQDKLKAENYLLN---DDK 104

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           ++ +D  VE       +++G  ++ R   AF+ IQ GC+  CTFC +   RG   S  ++
Sbjct: 105 ILVSDNQVEP-----VLINGFEDKSR---AFIEIQNGCNHSCTFCSITEARGNNRSVPIN 156

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
            ++++ R  ++NG  E+   G ++  + G  L G+    S +   L +I  L RLR ++ 
Sbjct: 157 SIIEQIRIFVENGYQEVVFTGVDITDF-GTDLLGKPSLGSMIRRVLKDIPELKRLRLSSI 215

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
              ++ D L+    +   LMP+LHL +QSG++ ILK M RRH   +  +   +++S+RP+
Sbjct: 216 DVAEVDDELMDLIANESRLMPHLHLSLQSGNNLILKRMKRRHNREQVIEFCHKMKSLRPN 275

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           IA  +D I GFP ETD+ F+ T+DL+ K       +F YS R  TP + M  QV ENV+ 
Sbjct: 276 IAFGADIIAGFPTETDEMFQDTVDLLKKTNIVYLHAFPYSERKNTPAARM-PQVPENVRK 334

Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIG 448
           ER+  L++  +E   SF  + +     VL+E++       VGR+     + L SK     
Sbjct: 335 ERVKNLREVNKEIMSSFCQSLINTKQSVLVEQNN------VGRAENFALIKLESKAQ-AK 387

Query: 449 DIIKVRITDVKISTLYGEL 467
            I+KV +  V+ + L G +
Sbjct: 388 SIVKVNVKGVENNYLIGNI 406


>gi|15892503|ref|NP_360217.1| hypothetical protein RC0580 [Rickettsia conorii str. Malish 7]
 gi|15619661|gb|AAL03118.1| unknown [Rickettsia conorii str. Malish 7]
          Length = 421

 Score =  175 bits (443), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 115/400 (28%), Positives = 199/400 (49%), Gaps = 37/400 (9%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V ++GC++N+Y+S  +       G + V         + NTC + + A ++    + R +
Sbjct: 14  VVTFGCRLNIYESEIIRKNLELSGIDNV--------AIFNTCAVTKAAEKQARQAIRRAK 65

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ-----TYYRLPELLERA 143
                  K   DL ++V GC AQ    ++    P V+ V+G +      YY++ +     
Sbjct: 66  -------KNNPDLKIIVTGCSAQT-SPQMYGNMPEVDKVIGNEEKLLPNYYQITD----- 112

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
              K  V+   SV++    L       +R     AF+ +Q GCD FCTFC++PY RG   
Sbjct: 113 --AKITVNDIMSVKETASHLVSSFDCKSR-----AFIQVQNGCDHFCTFCIIPYGRGKSR 165

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS-LSEIKGLVR 262
           S ++  + ++ + L+ NG  E+   G +V A+ G  L G   TF+ ++   L+ +  L R
Sbjct: 166 SVAIGAIAEQVKHLVLNGFKEVVFTGVDVTAY-GSDLPGSP-TFAQMIKRVLNLVPELKR 223

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LR ++    ++ D L +     + +MP+ H+ +Q+G D ILK M RRH      +   ++
Sbjct: 224 LRLSSIDVAEIDDELFELIAYSERIMPHFHISLQAGDDMILKRMKRRHNRANVIEFCRKL 283

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R++RP+++  +D I GFP ET + F  T  L+ +        F YS R GTP + M  QV
Sbjct: 284 RAIRPEVSFGADIIAGFPTETPEMFENTRKLISEAELQYLHVFPYSEREGTPAARM-PQV 342

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422
            +N++ ER   L+++ + Q   F    +GQ +E+L+E + 
Sbjct: 343 PKNIRKERAAILRQEGQNQLTEFFKKHIGQKVELLVENNN 382


>gi|256827193|ref|YP_003151152.1| MiaB-like tRNA modifying enzyme [Cryptobacterium curtum DSM 15641]
 gi|256583336|gb|ACU94470.1| MiaB-like tRNA modifying enzyme [Cryptobacterium curtum DSM 15641]
          Length = 409

 Score =  175 bits (443), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 125/401 (31%), Positives = 202/401 (50%), Gaps = 34/401 (8%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDD--ADLIVLNTCHIREKAAEKVYSF 83
           R+ + + GC++N  +S    D   +Q  +R    DD   D++V+NTC +  +A +K    
Sbjct: 2   RYTIINLGCKVNRVES----DTIAAQLEDRGAITDDRYPDVVVINTCTVTGEAEKKTRKT 57

Query: 84  LGR-IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
           + R +R+   +R        VVV GC A  + +E L     V VV G           + 
Sbjct: 58  VRRALRDFMGARS-------VVVTGCAAALDPDEFLSMDERV-VVCGKN---------QV 100

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           A      V  +  + ++  R     G +  + G    L IQ+GC   CTFC+V   RG  
Sbjct: 101 ADTCFEAVHEEPLIAEEVRRHLRFGGDFPTRVG----LKIQDGCSAACTFCIVHVARGKA 156

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR L  V+ EA +L D GV E+ L G N+  +     +      + +   L +    +R
Sbjct: 157 FSRPLPDVLREAHELYDAGVREVVLTGINLGTYTSNNAN-----LAKVAQQLIDEMPKLR 211

Query: 263 LRYTTSHPRDMSDCLIKAHGDLD-VLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           +R ++  P   +D LI+     +  +  +LHLP+QSGS ++L  M R ++A ++  I++R
Sbjct: 212 VRISSIEPLHATDELIEVLSRQEGRVCRHLHLPLQSGSSKVLHEMARPYSAEQFLSIVER 271

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           IR+  P++++S+D IVGFPGETD DF+AT+D+V    +++   F+YS R GTP +   +Q
Sbjct: 272 IRTAVPEVSLSTDIIVGFPGETDQDFQATLDMVRACRFSKVHVFRYSKRAGTPAAARTDQ 331

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422
           +D  V A R   L +  RE +       +G   +VL+E HG
Sbjct: 332 IDSLVSANRSHILSELAREVRWQEATRRIGTSEDVLVESHG 372


>gi|57641999|ref|YP_184477.1| 2-methylthioadenine synthetase [Thermococcus kodakarensis KOD1]
 gi|57160323|dbj|BAD86253.1| probable 2-methylthioadenine synthetase [Thermococcus kodakarensis
           KOD1]
          Length = 427

 Score =  175 bits (443), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 131/445 (29%), Positives = 221/445 (49%), Gaps = 27/445 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R +V+SYGC  N  D   ME +    GYE   S + AD +V+NTC +++    K+     
Sbjct: 3   RVYVESYGCTRNKADGEIMEAILLRAGYELAESPESADYVVVNTCAVKDPTEHKMAR--- 59

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           RIR L +S  K      V+  GC+     + I    P V+ ++G ++  R+ E ++ A  
Sbjct: 60  RIRELLDSGKK------VIATGCLVHVNPDVI---DPRVSGMLGVKSIDRIAEAIDLAER 110

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G ++V  +   E K ++L +       K GV   + I EGC   CT+C   + RG+  S 
Sbjct: 111 GGKLVSVEGWKERKVDKLELPR---LWKSGVVFVVPISEGCLNACTYCATRFARGVLKSY 167

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
               V+   ++ +  G  EI L  ++   +   G D      ++LL  ++ I+G  R+R 
Sbjct: 168 KPELVLKWVKEALARGYKEIQLSSEDTGCY---GFD-IGTNLAELLDEITAIEGDFRIRV 223

Query: 266 TTSHPRDMS---DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
              +P  +    D LI+ + D  V   +LHLPVQSG + +L+ M R +T  E+ +I+   
Sbjct: 224 GMMNPNHVIKFLDELIEVYQDPKVYK-FLHLPVQSGDNEVLRRMGRNYTVEEFEEIVSEF 282

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R   P + +++D IVGFPGE ++ F+ T++LV ++   +    +YSPR GT  +   +  
Sbjct: 283 RRKIPGLNLNTDIIVGFPGEGEEAFQNTVELVKRVRPDKINVSRYSPRPGTIAAKWKQLP 342

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
              VK ER   L +   +     N   +G+ +EVL+   G EKG +  R+   + ++L++
Sbjct: 343 GWKVK-ERSRILHRLRLQIAYEINQTYLGKKVEVLVHGPG-EKGGIDARTFNYKEIILDA 400

Query: 443 KNHNIGDIIKVRITDVKISTLYGEL 467
                G+I + +IT    + L GE+
Sbjct: 401 GEK--GEITRAKITWAGSTYLRGEM 423


>gi|310814822|ref|YP_003962786.1| MiaB-like tRNA modifying enzyme [Ketogulonicigenium vulgare Y25]
 gi|308753557|gb|ADO41486.1| MiaB-like tRNA modifying enzyme [Ketogulonicigenium vulgare Y25]
          Length = 422

 Score =  175 bits (443), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 117/367 (31%), Positives = 183/367 (49%), Gaps = 32/367 (8%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  M+D+    G         +  +V+NTC +  +A  K    + ++R  
Sbjct: 10  TLGCRLNAYETEAMKDLAARAGV--------SGAVVVNTCAVTSEAVRKARQEIRKLR-- 59

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG------PQTYYRL-PELLERA 143
                +E  D  ++V GC AQ E E        V+ V+G      P+T+  + P+L+ R 
Sbjct: 60  -----REHPDKKIIVTGCAAQTEPETFTAMGE-VDFVIGNTEKMKPETWAAMAPDLIGRT 113

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
              +  VD   SV++    L  +DG   R R   A++ +Q GCD  CTFC++PY RG   
Sbjct: 114 EPVQ--VDDIMSVKETAGHL--IDGFGTRAR---AYVQVQNGCDHRCTFCIIPYGRGNSR 166

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           S     VVD+ ++L+D G  E+ L G ++ +W G  L         ++  L  +  L RL
Sbjct: 167 SVPAGVVVDQIKRLVDRGYNEVVLTGVDLTSW-GADLPATPRLGDLVMRILKLVPDLPRL 225

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R ++    +  + L++A      LMP+LHL +Q+G + ILK M RRH   +  +  +  R
Sbjct: 226 RISSIDSIEADEMLMQAIATEQRLMPHLHLSLQAGDNMILKRMKRRHMREDAIRFCEEAR 285

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
            +RPD+   +D I GFP ET+  F  ++ LV   G      F YSPR GTP + M  QV+
Sbjct: 286 VLRPDMTFGADIIAGFPTETEAMFENSLKLVQDCGLTWLHVFPYSPRKGTPAARM-PQVN 344

Query: 384 ENVKAER 390
            N   ER
Sbjct: 345 GNAIRER 351


>gi|42520370|ref|NP_966285.1| MiaB-like tRNA modifying enzyme [Wolbachia endosymbiont of
           Drosophila melanogaster]
 gi|42410108|gb|AAS14219.1| MiaB-like tRNA modifying enzyme [Wolbachia endosymbiont of
           Drosophila melanogaster]
          Length = 408

 Score =  175 bits (443), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 130/439 (29%), Positives = 222/439 (50%), Gaps = 36/439 (8%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V ++GC++N Y+S  +++       E V        +V+++C +  +A  +V   + +I 
Sbjct: 4   VITFGCRLNFYESELIKEALKKAKRENV--------VVVHSCAVTNEAERQVKQKIRKI- 54

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
             KN   KE     ++V GC  Q + E +    P V+ V+G Q   +    L       +
Sbjct: 55  -YKNDPNKE-----IIVVGCAVQLDPE-VYSSIPGVSKVLGNQDKLKAENYLLN---DDK 104

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           ++ +D  VE       +++G  ++ R   AF+ IQ GC+  CTFC +   RG   S  ++
Sbjct: 105 ILVSDNQVEP-----VLINGFEDKSR---AFIEIQNGCNHSCTFCSITEARGNNRSVPIN 156

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
            ++++ R  ++NG  E+   G ++  + G  L G+    S +   L +I  L RLR ++ 
Sbjct: 157 SIIEQIRIFVENGYQEVVFTGVDITDF-GTDLLGKPSLGSMIRRVLKDIPELKRLRLSSI 215

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
              ++ D L+    +   LMP+LHL +QSG++ ILK M RRH   +  +   +++S+RP+
Sbjct: 216 DVAEVDDELMDLIANESRLMPHLHLSLQSGNNLILKRMKRRHNREQVIEFCHKMKSLRPN 275

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           IA  +D I GFP ETD+ F+ T+DL+ K       +F YS R  TP + M  QV ENV+ 
Sbjct: 276 IAFGADIIAGFPTETDEMFQDTVDLLKKTNIVYLHAFPYSERKNTPAARM-PQVPENVRK 334

Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIG 448
           ER+  L++  +E   SF  + +     VL+E++       VGR+     + L SK     
Sbjct: 335 ERVKNLREVNKEIMSSFCQSLINTKQSVLVEQNN------VGRTENFALIKLESKAQ-AK 387

Query: 449 DIIKVRITDVKISTLYGEL 467
            I+KV +  V+ + L G +
Sbjct: 388 SIVKVNVKGVENNYLIGNI 406


>gi|116747616|ref|YP_844303.1| RNA modification protein [Syntrophobacter fumaroxidans MPOB]
 gi|116696680|gb|ABK15868.1| RNA modification enzyme, MiaB family [Syntrophobacter fumaroxidans
           MPOB]
          Length = 440

 Score =  175 bits (443), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 119/432 (27%), Positives = 213/432 (49%), Gaps = 12/432 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++  V++ GC++N Y+S  M +      ++ V+    ADL V+++C +   AA     F 
Sbjct: 4   KKVAVETLGCKVNQYESSVMMESLMQANWQPVSFKGAADLYVVHSCAVTSSAA-----FQ 58

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R    +  R+  G   L+ V GC AQ + +  L    +   ++G    + +   +E   
Sbjct: 59  TRQLLRRARRLNPGA--LIAVVGCDAQLDHDR-LAAGELATHILGTAEKFDIARWIEVPA 115

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
                      V D   RLS             A+L +Q+GC+ +C++CVVPYTRG   S
Sbjct: 116 SFAAPCRAVKGVND-IPRLSAQAVSCMHTGRTRAYLKVQDGCNAYCSYCVVPYTRGRSRS 174

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
               +V+   R+ ++ G  E+ L G ++  W GK L   +   + LL  + +     R+R
Sbjct: 175 LPADEVLSRLRRFVEVGYREVILTGIHLGQW-GKDLTPTR-DLAGLLDRIGDSDSPPRVR 232

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
            ++  P + S  L++    +  + P+ H+P+QSG D +L +M+R +TA +Y  +I  +R 
Sbjct: 233 LSSLEPLEWSAGLLRRISTVPWICPHFHIPLQSGDDDVLAAMHRPYTALQYANLIRELRM 292

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           + P+ A+ +D +VGFPGET   F  T+ LV+++       F +SPR GTP ++M  ++  
Sbjct: 293 LFPEAALGADVMVGFPGETQRRFLNTLHLVEELPLTYLHVFPFSPRPGTPAADMPGRIPG 352

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSP-WLQSVVLNSK 443
           +   +R   LQ     ++  F++  +G+ +EVL+E      G L G +  +LQ +     
Sbjct: 353 DETKKRARLLQDIGTRKRRQFSERFLGRSVEVLVESAAPRAGWLRGTTANYLQVLFPAGP 412

Query: 444 NHNIGDIIKVRI 455
               G I++V++
Sbjct: 413 PVLPGSIVRVQV 424


>gi|308270514|emb|CBX27126.1| Ribosomal protein S12 methylthiotransferase rimO [uncultured
           Desulfobacterium sp.]
          Length = 446

 Score =  175 bits (443), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 121/446 (27%), Positives = 214/446 (47%), Gaps = 15/446 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA-AEKVYSF 83
           +  +++S GC  N+ DS  M       G+  V+    A  I++NTC   E A +E V + 
Sbjct: 10  KNIYLESLGCARNLVDSELMLGRLADAGFNIVSDPAKARTILINTCSFIEAAISESVDTI 69

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           L   +  +N + +      ++V GC+ +   E+I++  P V+  +G   Y ++ + +E  
Sbjct: 70  LELAKYKRNGKCRR-----IIVTGCLPERFREKIIKTLPEVDFFLGTGAYSKILQAVEGI 124

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
                ++  D  +      LS       R     A+L I EGC + CT+C++P  RG + 
Sbjct: 125 PIASGILLPDPGLTT----LSYNAETRIRTDPNIAYLKISEGCSRRCTYCIIPKLRGKQR 180

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR +  VV EA+ LI++GV E+ L+ Q+  ++ GK + G   + + L+  +S +   + +
Sbjct: 181 SREIEDVVLEAKSLIESGVKELILVAQD-TSYYGKDM-GSSVSLAKLIERISGLSDDIWI 238

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R    HP  +    IKA      + PY  +P+Q  + +ILK M R +   +  ++ D+IR
Sbjct: 239 RILYGHPESIETDAIKAIACTHNVCPYFDIPIQHVNSKILKRMGRNYNQTKLLKLFDKIR 298

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           S   D  + +  I GFPGETD DF   +  ++ + +    +F YS        N+ E+V 
Sbjct: 299 SYDSDAVLRTTVITGFPGETDKDFAELLSFIETVKFDHLGTFIYSDSKDIASHNLSEKVR 358

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK---GKLVGRSPWLQSVVL 440
           +NV  +R   +     E     N   +G++ +VL+E   +EK   G+   ++P +  +  
Sbjct: 359 KNVAKKRYDRIMSSQMEISYHKNRRHIGKVFDVLVEGFPEEKLYIGRTKYQAPDVDGITY 418

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGE 466
            S     G +++ +ITD     L GE
Sbjct: 419 ISGELKTGSLVRTKITDALEYDLIGE 444


>gi|157828452|ref|YP_001494694.1| hypothetical protein A1G_03275 [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|165933167|ref|YP_001649956.1| tRNA 2-methylthioadenosine synthase-like protein [Rickettsia
           rickettsii str. Iowa]
 gi|157800933|gb|ABV76186.1| hypothetical protein A1G_03275 [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|165908254|gb|ABY72550.1| tRNA 2-methylthioadenosine synthase-like protein [Rickettsia
           rickettsii str. Iowa]
          Length = 421

 Score =  175 bits (443), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 119/400 (29%), Positives = 199/400 (49%), Gaps = 37/400 (9%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V ++GC++N+Y+S  +       G + V         + NTC +  KAAEK      + R
Sbjct: 14  VVTFGCRLNIYESEIIRKNLELSGIDNV--------AIFNTCAV-TKAAEK------QAR 58

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ-----TYYRLPELLERA 143
                  K   DL ++V GC AQ    ++    P V+ V+G +      YY++ +     
Sbjct: 59  QAIRKAKKNNPDLKIIVTGCSAQT-SPQMYGNMPEVDKVIGNEEKLLPNYYQITD----- 112

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
              K  V+   SV++    L       +R     AF+ +Q GCD FCTFC++PY RG   
Sbjct: 113 --AKITVNDIMSVKETASHLVSSFDCKSR-----AFIQVQNGCDHFCTFCIIPYGRGKSR 165

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS-LSEIKGLVR 262
           S ++  + ++ + L+ NG  E+   G +V A+ G  L G   TF+ ++   L+ +  L R
Sbjct: 166 SVAIGAIAEQVKHLVLNGFKEVVFTGVDVTAY-GSDLPGSP-TFAQMIKRVLNLVPELKR 223

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LR ++    ++ D L +     + +MP+ H+ +Q+G D ILK M RRH      +   ++
Sbjct: 224 LRLSSIDVAEIDDELFELIAYSERIMPHFHISLQAGDDMILKRMKRRHNRANVIEFCRKL 283

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R++RP+++  +D I GFP ET + F  T  L+ +        F YS R GTP + M  QV
Sbjct: 284 RAIRPEVSFGADIIAGFPTETPEMFENTRKLISEAELQYLHVFPYSEREGTPAARM-PQV 342

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422
            +N++ ER   L+++ + Q   F    +GQ +E+L+E + 
Sbjct: 343 PKNIRKERAAILRQEGQNQLTEFFKKHIGQKVELLVENNN 382


>gi|167752159|ref|ZP_02424286.1| hypothetical protein ALIPUT_00401 [Alistipes putredinis DSM 17216]
 gi|167660400|gb|EDS04530.1| hypothetical protein ALIPUT_00401 [Alistipes putredinis DSM 17216]
          Length = 433

 Score =  174 bits (442), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 129/445 (28%), Positives = 213/445 (47%), Gaps = 18/445 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +R    + GC++N  +S  +   F + G+ RV   + AD+ V+N+C + E A +K     
Sbjct: 4   RRVNFHTLGCKLNFSESSTLAREFEAGGFIRVGVSEAADISVINSCSVTEHADKKC---- 59

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
              RNL     +     ++VV GC AQ + +EI     +  V+          EL  R  
Sbjct: 60  ---RNLIRKIHRRNPAAIIVVTGCYAQLKPQEIASIEGVDLVLSNNDK----GELFRRVA 112

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
                    ++  D  E L+     ++      AFL +Q+GCD  C +C + Y RG   +
Sbjct: 113 ALAGKGPAQFTSCDA-EELTNFFAAFSSGDRTRAFLKVQDGCDYKCAYCTIHYARGASRN 171

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
             ++ +V EA ++   G  EI + G N   + G+   GE+  F DLL +L+E++G+ R R
Sbjct: 172 MPIADLVKEAEQIAAAGQREIVITGINTGDF-GR-TTGER--FIDLLRALNEVEGIERYR 227

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
            ++  P  ++D +I           + H+P+QSGSD +L  M RR+T  ++ + I+ +R 
Sbjct: 228 ISSIEPNLLTDEIIAFCASSPKFQHHFHIPLQSGSDSVLARMRRRYTTEKFAERIEAVRR 287

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           + PD  I  D IVGFPGET+ DFR T + ++++  A    F +S R GTP  +  ++V  
Sbjct: 288 LMPDAFIGIDVIVGFPGETESDFRTTYEFLERLAPAYLHIFPFSERPGTPAVDFPDKVQP 347

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
           +V   R+  L++  R     F     G   EVL E   +  G + G +   + V      
Sbjct: 348 SVATRRVEELEELCRRLHGEFCARAEGTTDEVLFESTMR-GGMMFGYTGNYRRVKAPYDR 406

Query: 445 HNIGDIIKVRITDV-KISTLYGELV 468
             I  I +VR+  +   + L GE+V
Sbjct: 407 SRINTICRVRLGRMDDANDLEGEIV 431


>gi|254479999|ref|ZP_05093247.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [marine gamma
           proteobacterium HTCC2148]
 gi|214039561|gb|EEB80220.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [marine gamma
           proteobacterium HTCC2148]
          Length = 441

 Score =  174 bits (442), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 134/460 (29%), Positives = 214/460 (46%), Gaps = 45/460 (9%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           Q+    S GC   + DS R+       GY+ V S  DA+++V+NTC   + A ++    +
Sbjct: 7   QKVGFISLGCPKALVDSERILTQLKMDGYDIVPSYQDAEVVVVNTCGFIDSAKQESLDAI 66

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAE-GEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           G         I E G   V+V GC+ + +    I+   P V  V GP  Y  +       
Sbjct: 67  GEA-------ISENGK--VIVTGCMGKGDDANSIMELHPKVLAVSGPAAYEEV-----VG 112

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
              + V    +   D +  L    G     R   A+L I EGC+  C+FC++P  RG  +
Sbjct: 113 AVHEYVPPNPH--HDPYTDLVPPQGIKLTPRHY-AYLKISEGCNHRCSFCIIPDMRGDLV 169

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLY 252
           SR +  V++EA +L+  GV E+ ++ Q+ +A           W G+ L   K     L  
Sbjct: 170 SRPIGDVMEEAERLVRAGVRELLVISQDTSAYGIDTKFRTGFWNGRPL---KTHMQQLCE 226

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
           +L++    VRL Y   +P       + A G +   +PYL +P+Q GS  +LK M R   A
Sbjct: 227 ALADFGVWVRLHYVYPYPHVDKVIPLMAEGKI---LPYLDVPLQHGSPDVLKRMKRPAAA 283

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
            +  + I   RSV PDI + S FIVGFPGETD DF   +D +D+    +   F+YSP  G
Sbjct: 284 EKSLERIQAWRSVCPDITLRSTFIVGFPGETDKDFDILLDFIDEAQLDRVGCFQYSPVKG 343

Query: 373 TPGSNMLEQVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GK 427
              +++   V E +K    ER + LQ+++   ++      +G  IE+LI++   E   G+
Sbjct: 344 ARANDLPNHVPEELKQERWERFMALQQEISTAKLQQK---LGSTIEILIDEVDSEGAIGR 400

Query: 428 LVGRSPWLQSVVL--NSKNHNIGDIIKVRITDVKISTLYG 465
               +P +   V    + + N GD+++  +T      L+ 
Sbjct: 401 SSADAPEIDGKVFLDGATDLNPGDLVEAEVTAANEYDLWA 440


>gi|261403097|ref|YP_003247321.1| MiaB-like tRNA modifying enzyme [Methanocaldococcus vulcanius M7]
 gi|261370090|gb|ACX72839.1| MiaB-like tRNA modifying enzyme [Methanocaldococcus vulcanius M7]
          Length = 414

 Score =  174 bits (442), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 132/450 (29%), Positives = 231/450 (51%), Gaps = 43/450 (9%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ +V+ YGC +N  D+  +++    +G+E V+ +D AD+ V+NTC +R +   ++   +
Sbjct: 2   KKVYVEGYGCVLNSADTEIIKNALREEGFEIVDELDRADVAVINTCVVRLETENRMIYRI 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE-RA 143
             ++NL       G D  VVVAGC+ +A  E++     I      P+  ++  ++L+   
Sbjct: 62  NELKNL-------GKD--VVVAGCLPKALKEKVKGFLHIY-----PREAHKAGKILKIYI 107

Query: 144 RFGKRV--VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           + GKRV  ++ D S+  K + ++           +   L I EGC   CT+C+V   RG 
Sbjct: 108 KSGKRVEGLEDDKSLHKKLDYIT---------SSLITPLPICEGCLGHCTYCIVKIARGN 158

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
            IS    ++V +A +LI  G   I +  Q+   +   G D      ++LL  L  I+G  
Sbjct: 159 LISYPREKIVKKAEELIKKGTKCIFITAQDTACY---GFDRND-NLANLLNDLCNIEGDF 214

Query: 262 RLRYTTSHPRDMS---DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
            +R    H +++    D LI+ +   D +  +LHLP+QSG D ILK M R +T  E+++I
Sbjct: 215 IMRVGMMHAKNVEEIIDELIEVY-KTDKVGKFLHLPLQSGDDEILKKMRRGYTVDEFKEI 273

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           ++  R    ++  ++D IVGFPGET++ F  T++++ ++        KYS R GT  + M
Sbjct: 274 VNEFRKKVKNLCFTTDIIVGFPGETEEQFENTLNILKELKPDYIHGAKYSQRKGTEAAKM 333

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSV 438
            +QVD  ++ +R   L K  RE     N   +G+ ++ LI + GK      G +   +  
Sbjct: 334 -KQVDTKIRKQRSEILDKLRRELSYINNKKYIGKKLKTLILEEGK------GYTENFK-- 384

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           V+  +  +IG+  KV+I D K   L G+++
Sbjct: 385 VVKFEGGSIGNFKKVKIVDAKTFGLVGKII 414


>gi|195027257|ref|XP_001986500.1| GH20489 [Drosophila grimshawi]
 gi|193902500|gb|EDW01367.1| GH20489 [Drosophila grimshawi]
          Length = 554

 Score =  174 bits (442), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 133/467 (28%), Positives = 230/467 (49%), Gaps = 42/467 (8%)

Query: 16  QIVDQCIVP--QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIR 73
           +I+ + ++P  Q+ +VK++GC  N  DS  M     S GY +++  ++ADL +LN+C ++
Sbjct: 62  KIIHESVIPGTQKVYVKTWGCAHNNSDSEYMAGQLASFGY-KLSGKNEADLWLLNSCTVK 120

Query: 74  EKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQ-AEGEEILRRSPIVNVVVGPQT 132
             + +         RN   + ++ G    VVVAGCV Q A   + LR       V+G Q 
Sbjct: 121 NPSEDT-------FRNEIEAGMRNGKH--VVVAGCVPQGAPKSDYLRGL----SVIGVQQ 167

Query: 133 YYRLPELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCT 191
             R+ E++E    G  V +  +  V  +    + +     RK  +   ++I  GC   CT
Sbjct: 168 IDRVVEVVEETLKGHSVRLLQNKKVHGRRVAGAPLSLPKVRKNPLIEIISINSGCLNQCT 227

Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLL 251
           +C   + RG   S   +++VD AR+  D G CEI L  ++  A+ G+ +     +  +LL
Sbjct: 228 YCKTKHARGDLASYPPAEIVDRARQSFDEGCCEIWLTSEDTGAY-GRDIGS---SLPELL 283

Query: 252 YSLSEI--------KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
           + L E+         G+    Y   H  +++  L         +  +LH+PVQSGSD +L
Sbjct: 284 WQLVEVIPEHCMLRVGMTNPPYILEHLEEVAKVLQHPR-----VYAFLHVPVQSGSDSVL 338

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
             M R +   ++  ++D +RS  P + I++D I GFP ET+ DF  TM L +K  +   F
Sbjct: 339 GEMKREYCRKDFEHVVDFLRSRVPGLTIATDIICGFPTETEQDFEETMTLCEKYQFPSLF 398

Query: 364 SFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDAC--VGQIIEVLIEKH 421
             ++ PR GTP + M E++  N+  +R     K+L +   S+       GQ+  VL+ + 
Sbjct: 399 INQFFPRPGTPAAKM-ERIPANLVKKRT----KRLTDLFYSYEPYAGREGQLYTVLVTEI 453

Query: 422 GKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
             +K   VG +   + V+L  + + +G  ++VRIT     ++ GE++
Sbjct: 454 SHDKLHYVGHNKSYEQVLLPMRKNLLGTRVRVRITSSSKFSMMGEIL 500


>gi|34580504|ref|ZP_00141984.1| hypothetical protein [Rickettsia sibirica 246]
 gi|28261889|gb|EAA25393.1| unknown [Rickettsia sibirica 246]
          Length = 416

 Score =  174 bits (442), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 120/400 (30%), Positives = 201/400 (50%), Gaps = 37/400 (9%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V ++GC++N+Y+S  +       G + V         + NTC +  KAAEK      + R
Sbjct: 9   VVTFGCRLNIYESEIIRKNLELSGIDNV--------AIFNTCAV-TKAAEK------QAR 53

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ-----TYYRLPELLERA 143
                  K   DL ++V GC AQ    ++    P V+ V+G +      YY++ +     
Sbjct: 54  QAIRKAKKNNPDLKIIVTGCSAQT-SPQMYGNMPEVDKVIGNEEKLLPNYYQITD----- 107

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
              K  V+   SV+   E  S +   ++ K    AF+ +Q GCD FCTFC++PY RG   
Sbjct: 108 --AKITVNDIMSVK---ETASHLISSFDCKS--RAFIQVQNGCDHFCTFCIIPYGRGKSR 160

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS-LSEIKGLVR 262
           S ++  + ++ + L+ NG  E+   G +V A+ G  L G   TF+ ++   L+ +  L R
Sbjct: 161 SVAIGAIAEQVKHLVLNGFKEVVFTGVDVTAY-GSDLPGSP-TFAQMIKRVLNLVPELKR 218

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LR ++    ++ D L +     + +MP+ H+ +Q+G D ILK M RRH      +   ++
Sbjct: 219 LRLSSIDVAEIDDELFELIAYSERIMPHFHISLQAGDDMILKRMKRRHNRANVIEFCRKL 278

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R++RP+++  +D I GFP ET + F  T  L+ +        F YS R GTP + M  QV
Sbjct: 279 RAIRPEVSFGADIIAGFPTETPEMFENTRKLISEAELQYLHVFPYSEREGTPAARM-PQV 337

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422
            +N++ ER   L+++ + Q   F    +GQ +E+L+E + 
Sbjct: 338 PKNIRKERAAILRQEGQNQLTEFFKKHIGQKVELLVENNN 377


>gi|256830661|ref|YP_003159389.1| MiaB family RNA modification protein [Desulfomicrobium baculatum
           DSM 4028]
 gi|256579837|gb|ACU90973.1| RNA modification enzyme, MiaB family [Desulfomicrobium baculatum
           DSM 4028]
          Length = 429

 Score =  174 bits (442), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 120/407 (29%), Positives = 206/407 (50%), Gaps = 40/407 (9%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           Q FF+ + GC++N Y+S  + +   + G    +    AD++++N+C + E+A   V    
Sbjct: 7   QLFFLTTQGCKVNQYESQAIREALVADGLMETHDPSLADIVLINSCAVTERA---VLDLA 63

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             +R    +  K      +VVAGC  +A+ E IL    +V+ V+  +    L       R
Sbjct: 64  KLVRGFAAADPKP----WIVVAGCAVEADRERILALC-LVDEVIAQKDKAAL------VR 112

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G+            F  LSI   GY+R RGV   + +Q+GC   CT+C++P TRG  +S
Sbjct: 113 MGEPSA--------PFPALSI--SGYHRARGV---IKVQDGCSHGCTYCIIPATRGRSVS 159

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI-----KG 259
           R  ++V+DEA +L++ G+ EI+L G N+  + G+ L G    F DLL  + +       G
Sbjct: 160 RPPAEVLDEAGRLLEAGIREISLCGINLRHY-GRDLPG-TTDFWDLLAEVDQALSPRWAG 217

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI- 318
             RLR  +  P D++   +       ++ P+LH+ +QSGS  +L+ M R H  Y   QI 
Sbjct: 218 RARLRLGSLEPGDLNAKALSTLAQSRLMTPHLHISLQSGSPEVLRRMGRGH--YGLEQIF 275

Query: 319 --IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
             +  +R + P   + +D I GFPGET      T+++V ++  + A  F YS R GTP +
Sbjct: 276 AFLHDLRDIWPVFGLGADLIAGFPGETQSHADETLEVVKRLPLSYAHVFPYSERPGTPAA 335

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSF-NDACVGQIIEVLIEKHG 422
                V  +++ ER   L++++  ++  F ++      ++V++E+ G
Sbjct: 336 LFKGAVPGHIRRERAKALRREVARKRADFLHELLKLPFMDVILEEGG 382


>gi|83312146|ref|YP_422410.1| ribosomal protein S12 methylthiotransferase [Magnetospirillum
           magneticum AMB-1]
 gi|123767962|sp|Q2W2S4|RIMO_MAGSA RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|82946987|dbj|BAE51851.1| 2-methylthioadenine synthetase [Magnetospirillum magneticum AMB-1]
          Length = 448

 Score =  174 bits (442), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 136/461 (29%), Positives = 222/461 (48%), Gaps = 53/461 (11%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           + S GC   + DS R+     ++GY+   S D AD++++NTC   + A  +    +G   
Sbjct: 10  IVSLGCSKALVDSERILTKLRAEGYDISGSYDGADVVIVNTCGFLDSARAESLEAIGEA- 68

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRS--PIVNVVVGPQTYYRLPELLERARFG 146
                 + E G   V+V GC+    G+E   RS  P V  V GP  Y  + E +  A   
Sbjct: 69  ------LAENGK--VIVTGCMG---GDEKAIRSAHPSVLAVSGPHQYQAVVEAVHAAI-- 115

Query: 147 KRVVDTDYSVEDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                    + D   +LS+V   G +      A+L I EGC+  C+FC++P  RG  +SR
Sbjct: 116 -------PPLHDP--KLSLVPPEGLHLTPHHYAYLKISEGCNNSCSFCIIPDIRGPLMSR 166

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYSL 254
             + V+ EA +L + GV E+ ++ Q+ +A           WRG+ +   +   +DL  +L
Sbjct: 167 PAADVLGEAERLAEAGVRELLVISQDTSAYGLDLRHAESTWRGRPV---RAHLTDLASAL 223

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
            E+   +RL Y   +P       + A G +   +PYL +P Q  S  +LK+M R      
Sbjct: 224 GELGIWIRLHYVYPYPHVDEIIPLMAEGKI---LPYLDIPFQHASPNVLKAMRR---PAN 277

Query: 315 YRQIIDRIRSVR---PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
             +++ RIRS R   PD+ + S FIVGFPGET++DF + +  +++    +   FKY    
Sbjct: 278 QEKVLGRIRSWRETCPDLTLRSTFIVGFPGETEEDFDSLLGWLEEAQLDRVGCFKYEDVK 337

Query: 372 GTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLV 429
           G P +   +QVDE+VK ER     +  R+       A  G  IEV+I++  +E   G+  
Sbjct: 338 GAPANAFADQVDEDVKEERHQRFMEAARQIADERGAAKEGTRIEVIIDEVDEEGAIGRSK 397

Query: 430 GRSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468
             SP +   V  +   ++  GD++ V +   +   L+G++V
Sbjct: 398 ADSPEVDGAVFMNGETDLEPGDLVIVEVEAAEDYDLWGDVV 438


>gi|183221932|ref|YP_001839928.1| hypothetical protein LEPBI_I2571 [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
 gi|189912001|ref|YP_001963556.1| 2-methylthioadenine synthetase [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167776677|gb|ABZ94978.1| 2-methylthioadenine synthetase [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167780354|gb|ABZ98652.1| Conserved hypothetical protein [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
          Length = 429

 Score =  174 bits (442), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 118/396 (29%), Positives = 201/396 (50%), Gaps = 25/396 (6%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N +++  M  +   +G+      ++A  IV+NTC +  KA  K        RN+
Sbjct: 7   TLGCRLNFFETDGMYTVLKDKGFTLATPDENAQYIVVNTCTVTNKADVKN-------RNI 59

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
             + I+      V V GC A+ + +E+L+  P V  V G      LP  +     GK   
Sbjct: 60  IRNAIRTNPGAKVFVTGCYAETD-KEVLQNIPGVYGVFGNTEKSSLPYQILADWEGK--- 115

Query: 151 DTDYSVEDKFERLSIVD---GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
              Y  E   +R S  D    G+ R     A+L IQ+GC++ C++C +P  RG+ +SR  
Sbjct: 116 --SYLPEKSLDRFSYSDVLPEGHTR-----AYLKIQDGCNRKCSYCKIPAARGLGVSRKY 168

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
             ++D+ + L DNGV EI L G N+  +R +  +GEK  F +LL  + ++    R+R ++
Sbjct: 169 DDILDQVKYLQDNGVGEIQLTGVNLGWYRLE--NGEK-GFLNLLEDILKVLEYSRIRLSS 225

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
             P D+   L+           +LH+P+QSGS +ILK M R +    +R  ++  +S  P
Sbjct: 226 IEPPDVGSGLLDLMSH-PRFCKFLHVPIQSGSRKILKEMRRTYHPDAFRTRMELAKSKLP 284

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
           ++ + +D IVGFP ET+ +F+ T  L+ ++G+A+   F YS R GT   ++ + +  + K
Sbjct: 285 NLFLGTDVIVGFPSETEVEFQETKQLLIELGFAKLHVFPYSVRKGTTAESLGDPIPGDEK 344

Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK 423
             R+L L         S+    +G+  E ++E  G+
Sbjct: 345 KRRVLELMALSSILHTSYAKTAIGKTFEAILENDGR 380


>gi|303243568|ref|ZP_07329910.1| MiaB-like tRNA modifying enzyme [Methanothermococcus okinawensis
           IH1]
 gi|302486129|gb|EFL49051.1| MiaB-like tRNA modifying enzyme [Methanothermococcus okinawensis
           IH1]
          Length = 428

 Score =  174 bits (442), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 128/455 (28%), Positives = 240/455 (52%), Gaps = 40/455 (8%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ +++ YGC +N  D++ +++   + + ++ V + +DAD++++NTC +R +   K+ S 
Sbjct: 2   KKIYIEGYGCTLNAADTIIIKNSIVTFKDFQIVQNPEDADVVIINTCAVRLETEHKMIS- 60

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE-- 141
             RI++ K+   K      VVVAGC+ +A  E++     I +V++ P+  +   +++   
Sbjct: 61  --RIKHFKSLNKK------VVVAGCMPKALREKV---EDIGDVLIMPKEAHLSGKIVHDY 109

Query: 142 ----RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197
                   G    +++  ++DK + L+      N +  +   L I EGC   CT+C+V  
Sbjct: 110 TTYNHCNIGGNN-NSNVDIDDKLKYLTPT----NPENSLIMPLPISEGCIGKCTYCIVKV 164

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257
            RG  IS + + ++ +A + I+ GV  I +  Q+   +   G D    T  +L+  ++ I
Sbjct: 165 ARGRLISYNRNLLIKKAEEFINKGVKHILITSQDTACY---GFDKND-TLPNLINDIASI 220

Query: 258 KGLVRLRYTTSHPRDMS---DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
            G   +R    H ++++   D LI ++ + D +  +LHLP+QSG D++LK M R +T  E
Sbjct: 221 DGEFDMRIGMMHAKNVTQIMDELIASYQN-DKVSKFLHLPIQSGDDKVLKDMKRGYTVDE 279

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
           +  I++  +    D+  ++D IVGFP E +++F  T++++ K+        KY+ R  T 
Sbjct: 280 FIDIVNEFKRKVKDLNFNTDVIVGFPTEKEENFENTLEVLKKLNPDYIHGAKYTQRRHTE 339

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPW 434
            +  L+QVD  V+ +R   L K  RE     N   +G+ ++VLI ++ K      G +  
Sbjct: 340 AAK-LKQVDTKVRKKRSEILDKLRRELSYKNNKNYIGKTLKVLITENNK------GIAHN 392

Query: 435 LQSVVLNS-KNHNIGDIIKVRITDVKISTLYGELV 468
            + V  NS KN  IG+  K++ITD K   L+GE++
Sbjct: 393 CKVVKFNSDKNIKIGEFRKIKITDAKTFGLFGEIL 427


>gi|126175991|ref|YP_001052140.1| ribosomal protein S12 methylthiotransferase [Shewanella baltica
           OS155]
 gi|217971749|ref|YP_002356500.1| ribosomal protein S12 methylthiotransferase [Shewanella baltica
           OS223]
 gi|238066597|sp|A3D958|RIMO_SHEB5 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|125999196|gb|ABN63271.1| MiaB-like tRNA modifying enzyme YliG [Shewanella baltica OS155]
 gi|217496884|gb|ACK45077.1| MiaB-like tRNA modifying enzyme YliG [Shewanella baltica OS223]
          Length = 472

 Score =  174 bits (442), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 137/454 (30%), Positives = 222/454 (48%), Gaps = 42/454 (9%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ DS R+       GYE  NS  +ADL+++NTC   + A E+    L  +R  
Sbjct: 39  SLGCPKNLVDSERILTQLRIDGYEVTNSYANADLVIVNTCGFIDAAVEES---LDAVREA 95

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               ++E G   V+V GC+   E  +I    P V  + GP +Y  +          K V 
Sbjct: 96  ----LEENGK--VIVTGCLGAKEN-QIREVHPDVLEITGPHSYEAV-----LKHVHKYVP 143

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
             ++   + F  L I   G        A+L I EGCD  CTFC++P  RG   SR    +
Sbjct: 144 KPEH---NPFTSL-IPQTGVKLTPKHYAYLKISEGCDNRCTFCIIPSLRGDLDSRPAGSI 199

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE---------KCTFSDLLYSLSEIKGLV 261
           +DEA++L+++GV EI ++ Q+ +A+ GK   G          K   + L   L ++   V
Sbjct: 200 LDEAKRLVESGVQEILVVSQDTSAY-GKDKGGRTDFWNGMPVKQDITSLARQLGKMGAWV 258

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           RL Y   +P       + A G   +++PYL +P+Q  S RILK M R        + I R
Sbjct: 259 RLHYIYPYPWVDDLIPLMAEG---LILPYLDIPMQHASPRILKMMKRPGRVDRQLEAIQR 315

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
            R + PD+ I S FIVGFPGET++DF+  +D + +    +   FKYS   G   + + E 
Sbjct: 316 WREICPDLVIRSTFIVGFPGETEEDFQILLDFLKEARLDRVGCFKYSEVDGAVANTIAEL 375

Query: 382 VDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPWLQ 436
           + E+VK +   R + +Q ++  ++++     VG+ +++LI+   +E   G+    +P + 
Sbjct: 376 ISEDVKEDRYHRFMEVQAEISAERLA---RFVGRTLDILIDDVDEEGAIGRSFADAPEID 432

Query: 437 SVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468
            +V  +    +  G +++ RIT      L+ E+V
Sbjct: 433 GMVFINGETELEPGMLVRARITHSDEHDLWAEVV 466


>gi|224045698|ref|XP_002191115.1| PREDICTED: CDK5 regulatory subunit associated protein 1-like 1
           [Taeniopygia guttata]
          Length = 582

 Score =  174 bits (442), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 134/461 (29%), Positives = 222/461 (48%), Gaps = 41/461 (8%)

Query: 22  IVP--QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEK 79
           I+P  Q+ +++++GC  N  D   M     + GY   ++  +ADL +LN+C ++  A + 
Sbjct: 57  IIPGVQKIWIRTWGCSHNNSDGEYMAGQLAAYGYTITDNSAEADLWLLNSCTVKNPAED- 115

Query: 80  VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG-EEILRRSPIVNVVVGPQTYYRLPE 138
              F   I+  +  + K      VV+AGCV QA+  +E L+   I+ V    Q   R+ E
Sbjct: 116 --HFRNSIKKAQEGKKK------VVLAGCVPQAQPRQEYLKGLSIIGV----QQIDRVVE 163

Query: 139 LLERARFGKRVVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
           ++E    G  V       +D  +RL  + +D    RK  +   ++I  GC   CT+C   
Sbjct: 164 VVEETIKGHSVRLLGQK-KDNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTK 222

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-RGKGLDGEKCTFSDLLYSLS 255
           + RG   S  + ++VD A++    GVCEI L  ++  A+ R  G D  K     LL+ L 
Sbjct: 223 HARGDLASYPIEELVDRAKQSFQEGVCEIWLTSEDTGAYGRDIGTDLPK-----LLWKLV 277

Query: 256 EI--------KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307
           E+         G+    Y   H  +M+  L         +  +LH+PVQS SD +L  M 
Sbjct: 278 EVIPEGAMLRLGMTNPPYILEHLEEMAKILNHPR-----VYAFLHIPVQSASDSVLMDMK 332

Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           R +   +++Q++D ++   P I I++D I GFPGETD+DF+ TM LV+   +   F  ++
Sbjct: 333 REYCVADFKQVVDFLKEKVPGITIATDIICGFPGETDEDFQETMKLVELYRFPSLFINQF 392

Query: 368 SPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK 427
            PR GTP + M  QV   VK +R   L +       S  D  VG+   VL+ +   +   
Sbjct: 393 YPRPGTPAAKM-PQVPAAVKKQRTKDLSQLF--HSYSPYDHKVGERQRVLVTEESFDSNY 449

Query: 428 LVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            V  +P+ + V++      +G +++V I +     + G+ V
Sbjct: 450 YVAHNPFYEQVLVPKDPLLMGKMVEVDIYEAGKHFMKGQPV 490


>gi|25989454|gb|AAL82723.1| Fe-S oxidoreductase [Edwardsiella tarda]
          Length = 446

 Score =  174 bits (442), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 130/456 (28%), Positives = 220/456 (48%), Gaps = 46/456 (10%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ DS R+     ++GY  V + +DADL+++NTC   + A ++    +G     
Sbjct: 19  SLGCPKNLVDSERILTELRTEGYLVVPTYEDADLVIVNTCGFIDSAVQESLEAIGEA--- 75

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               + E G   V+V GC+   E + I    P V  + GP +Y ++          K V 
Sbjct: 76  ----LHENGK--VIVTGCLGAKENQ-IREVHPKVLEISGPHSYEQV-----LHHVHKYVA 123

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
              +   + F  L + + G        A+L I EGC+  C FC++P  RG   SR +  V
Sbjct: 124 KPQH---NPFTSL-VPEQGVKLTPKHFAYLKISEGCNHRCAFCIIPSLRGDLESRPIGAV 179

Query: 211 VDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYSLSEIKG 259
           +DEA++L D+GV E+ ++ Q+ +A           W G+ +   K +   L   L+ +  
Sbjct: 180 LDEAKRLADSGVRELLVISQDTSAYGADIQHRTGFWNGQPV---KTSMLSLCEQLATLGI 236

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
            +RL Y   +P       + A G L   +PYL +P+Q  S RILK M R        + I
Sbjct: 237 WIRLHYVYPYPHVDDVIPLMAQGKL---LPYLDIPLQHASPRILKLMKRPGAVERTLERI 293

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            R R + P + + S FIVGFPGET++DF+  +D + +    +   F+YSP  G   + + 
Sbjct: 294 KRWREICPQLTLRSTFIVGFPGETEEDFQMLLDFLREARLDRVGCFQYSPVEGAAANELP 353

Query: 380 EQVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPW 434
           +QV + +K    +R + LQ+++  +++      VG  + V+I++  +E   G+ +  +P 
Sbjct: 354 DQVPDEIKQARFDRFMQLQQQISAERLQEK---VGLTLPVIIDEVDEEGAIGRSMADAPE 410

Query: 435 LQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468
           +  VV  +    +  GDI+ V I +     ++G L 
Sbjct: 411 IDGVVYLNGERGVKPGDIVSVTIENADEYDMWGTLA 446


>gi|254712376|ref|ZP_05174187.1| MiaB-like tRNA modifying enzyme YliG [Brucella ceti M644/93/1]
 gi|254715448|ref|ZP_05177259.1| MiaB-like tRNA modifying enzyme YliG [Brucella ceti M13/05/1]
 gi|261217182|ref|ZP_05931463.1| conserved hypothetical protein [Brucella ceti M13/05/1]
 gi|261320053|ref|ZP_05959250.1| conserved hypothetical protein [Brucella ceti M644/93/1]
 gi|260922271|gb|EEX88839.1| conserved hypothetical protein [Brucella ceti M13/05/1]
 gi|261292743|gb|EEX96239.1| conserved hypothetical protein [Brucella ceti M644/93/1]
          Length = 437

 Score =  174 bits (441), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 149/464 (32%), Positives = 223/464 (48%), Gaps = 47/464 (10%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
            P+  FV S G    + DS R+     S+GYE     D ADL+++NTC   + A ++   
Sbjct: 3   APRVSFV-SLGSPKALVDSERIITGLRSEGYEISRKHDGADLVIVNTCGFLDSARDESLE 61

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +G   N       E G   V+V GC+  AE + I  R P V  + GPQ Y    E +  
Sbjct: 62  AIGLALN-------EYGK--VIVTGCLG-AEPDVIRERHPNVLAITGPQAY----ESVMN 107

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           A     V +      D F  L    G     R   A+L I EGC   C+FC++P  RG  
Sbjct: 108 A-----VHEVAPPAHDPFVDLVPPQGVKLTPRHY-AYLKISEGCSNRCSFCIIPALRGDL 161

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE-----------KCTFSDLL 251
           +SR +++V+ EA KL+  GV EI ++ Q+ +A+   GLD +           +  F D  
Sbjct: 162 VSRPINEVLREAEKLVQAGVKEILVISQDTSAY---GLDIKYQEAMWQDRTVRTKFLDFS 218

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
             L E+   VR+ Y   +P       + A G +   +PYL +P Q  S  +LK+M R   
Sbjct: 219 RELGEMGVWVRMHYVYPYPHVDEVIPLMAEGKI---LPYLDIPFQHASPAVLKNMRRPAH 275

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
             +  + I   R   PD+A+ S FIVG+PGET++DF+  +D +D+    +A  FKY    
Sbjct: 276 QEKTSRRIQAWRETCPDLAVRSTFIVGYPGETEEDFQMLLDWLDEAKIERAGCFKYEAVK 335

Query: 372 GTPGSNM-LEQVDENVKAERLLCLQKKLREQQVSFN--DACVGQIIEVLIEKHGKEKGKL 428
           G   +++ LEQV E VK  R      K  +QQ+S N     VG+ + V+I++     GK 
Sbjct: 336 GAKANDLGLEQVPEEVKEARWHRFMAK--QQQISTNLLKKKVGKRLPVIIDEANGTIGKG 393

Query: 429 VGR--SPWLQ-SVVLNSKNH-NIGDIIKVRITDVKISTLYGELV 468
             R  +P +  SV ++S+    +GDI+ V+I       L+G  V
Sbjct: 394 RTRYDAPEIDGSVHISSRRPLRVGDIVTVKIEASDAYDLHGTAV 437


>gi|160940888|ref|ZP_02088228.1| hypothetical protein CLOBOL_05780 [Clostridium bolteae ATCC
           BAA-613]
 gi|158436132|gb|EDP13899.1| hypothetical protein CLOBOL_05780 [Clostridium bolteae ATCC
           BAA-613]
          Length = 453

 Score =  174 bits (441), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 127/420 (30%), Positives = 211/420 (50%), Gaps = 36/420 (8%)

Query: 33  GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92
           GC++N Y++  M+     +GYE V     AD+ ++NTC +   A  K    L R + L  
Sbjct: 10  GCKVNAYETEAMQQQLEERGYEIVPFDQKADVYIINTCSVTNIADRKSRQMLHRAKKLNP 69

Query: 93  SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE------RARFG 146
                  + +VV AGC  Q    + L+    V+++VG     RL ++LE      +   G
Sbjct: 70  -------EAVVVAAGCYVQV-ASDALKEDDSVDIIVGNNNKARLADILEEYMKDRQGDEG 121

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
             V+D   + E  +E L +   G + +    AF+ +Q+GC++FC++C++PY RG   SR 
Sbjct: 122 GYVLDIARARE--YEELHVSRLGEHTR----AFIKVQDGCNQFCSYCIIPYARGRVRSRK 175

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRG--------KGLDGEKCTFSDLLYSLSEIK 258
              V  E + L+  G  E+ L G +++++          KG D +     DL+  +  ++
Sbjct: 176 PEDVEAEVKGLVARGYREVVLTGIHLSSYGTEHMEGSPVKGGDWDSGPLWDLIERIHRVE 235

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           GL R+R  +  PR ++    +    L    P+ HL +QSG D  LK MNR +T  +Y + 
Sbjct: 236 GLERIRLGSLEPRIITREFAEKLAGLPEFCPHFHLSLQSGCDATLKRMNRHYTTEDYLRR 295

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
              +R +    AI++D I GFPGET+++F  T   ++ + + +   FKYS R GT  + M
Sbjct: 296 CGILREIFDHPAITTDVIAGFPGETEEEFEETRRFLETVRFYEMHVFKYSKRQGTRAAVM 355

Query: 379 LEQVDENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK--LVGRSP 433
            +QV E VKA R   LL L+K +  +   + +   G  + VL E+  +  GK  ++G +P
Sbjct: 356 EDQVSEQVKARRSDVLLELEKTMSRE---YRERFAGSRVSVLFEEAAEIGGKWYMMGHTP 412


>gi|256422109|ref|YP_003122762.1| MiaB-like tRNA modifying enzyme YliG [Chitinophaga pinensis DSM
           2588]
 gi|256037017|gb|ACU60561.1| MiaB-like tRNA modifying enzyme YliG [Chitinophaga pinensis DSM
           2588]
          Length = 435

 Score =  174 bits (441), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 131/448 (29%), Positives = 220/448 (49%), Gaps = 37/448 (8%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVN--SMDDADLIVLNTCHIREKAAEK-VYSFLGRI 87
           + GC  N+ DS  +     +   + V+  +  D +++V+NTC   +KA E+ + + L +I
Sbjct: 15  TLGCSKNMVDSEVLSGQLLANEIDVVHESAKKDHNIVVVNTCGFIDKAKEESINTILEQI 74

Query: 88  RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147
                 R+++     V V GC+++    ++    P V+   G      LP +L++     
Sbjct: 75  ELKNRGRLEK-----VYVTGCLSERYRGDLESEIPGVDAWFGTM---ELPLILKK----- 121

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
              D DY  E   ERL      Y       A+L I EGC++ C+FC +P  RG  +SR +
Sbjct: 122 --FDADYKAELIGERLLATPTHY-------AYLKIAEGCNRTCSFCAIPLMRGGHVSRPI 172

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT-FSDLLYSLSEIKGLVRLRYT 266
            Q+V EA KL+++GV EI L+ Q +  +   GLD  K    +DLL +L+++KGL  +R  
Sbjct: 173 EQLVAEAEKLVNSGVKEIMLIAQELTYY---GLDLYKERRLADLLRALAQVKGLEWIRLH 229

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
            ++P      ++    +   +  Y+ +P+Q  +D +LKSM R+ T  E   +I  IR+  
Sbjct: 230 YAYPHKFPMEVLDVMNEFPNICKYIDMPLQHAADNMLKSMKRQITRVEMEDLITAIRAKV 289

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           P I + +  I G+PGET +D   T   ++K+   +   F YS   GT    + + +    
Sbjct: 290 PGICLRTTLITGYPGETLEDVEETKRFLEKMRLDRVGVFTYSHEEGTSAYELEDNIPAEE 349

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPW-----LQSVVLN 441
           K  R   + +  +E  +  N   VGQ+  V+++K  KE G+ + R+ +        V++N
Sbjct: 350 KERRAQDIMETQQEISLEKNQEKVGQVFRVIVDK--KESGRYLARTEFDSVEVDNEVIIN 407

Query: 442 -SKNHNIGDIIKVRITDVKISTLYGELV 468
            SK    G+ + VRIT      L GELV
Sbjct: 408 TSKRLKPGEFVNVRITKAYDYDLEGELV 435


>gi|157803826|ref|YP_001492375.1| MiaB-like tRNA modifying enzyme [Rickettsia canadensis str. McKiel]
 gi|157785089|gb|ABV73590.1| MiaB-like tRNA modifying enzyme [Rickettsia canadensis str. McKiel]
          Length = 422

 Score =  174 bits (441), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 118/407 (28%), Positives = 199/407 (48%), Gaps = 51/407 (12%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V ++GC++N+Y+S  +       G + V        +V NTC +  KAAEK      + R
Sbjct: 9   VVTFGCRLNIYESEIIRKNLELSGLDNV--------MVFNTCTV-TKAAEK------QAR 53

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
                  K+  DL ++V GC AQ                  PQ Y  +PE+ +     ++
Sbjct: 54  QAIRGAKKDNPDLKIIVTGCSAQT----------------SPQIYANMPEVDKVIGNEEK 97

Query: 149 VVDTDYSVEDKFERLSIVD------------GGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
           ++   Y + D  E++++ D              +N K    AF+ +Q GCD FCTFC++P
Sbjct: 98  LLPNYYQITD--EKIAVNDIMSVKETAGHLVSSFNGKS--RAFIQVQNGCDHFCTFCIIP 153

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS-LS 255
           Y RG   S  +  + ++ + L+ NG  E+   G +V A+ G  L G   TF+ ++   L+
Sbjct: 154 YGRGKSRSVPIGAITEQVKHLMLNGFKEVVFTGVDVTAY-GSDLPGSP-TFAQMIKRVLN 211

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
            +  L RLR ++    ++ D L +     + +MP+ H+ +Q+G D ILK M RRH     
Sbjct: 212 LVPELRRLRLSSIDVAEIDDELFELIAYSERIMPHFHISLQAGDDMILKRMKRRHKRTNV 271

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
            +   ++R++RP+++  +D I GFP ET + F  T  L+ +        F YS R GTP 
Sbjct: 272 IEFCWKLRAIRPEVSFGADIIAGFPTETPEMFENTRKLISEAELQYLHVFPYSEREGTPA 331

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422
           + M  QV + ++ ER   L+++ + Q   F    +GQ +E+L+E + 
Sbjct: 332 ARM-PQVPKPIRKERAEILRQEGQNQLTEFFKKHIGQKVELLVENNN 377


>gi|289549352|ref|YP_003474340.1| MiaB-like tRNA modifying enzyme [Thermocrinis albus DSM 14484]
 gi|289182969|gb|ADC90213.1| MiaB-like tRNA modifying enzyme [Thermocrinis albus DSM 14484]
          Length = 407

 Score =  174 bits (441), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 133/398 (33%), Positives = 206/398 (51%), Gaps = 23/398 (5%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRI- 87
           V + GC+ N +D   +   F  +GY      DDAD+ V+NTC + ++A       + RI 
Sbjct: 5   VVNLGCRSNFFDGQFILQKFIEKGY---ILGDDADIYVVNTCGVTKEAERSSRQAIRRIK 61

Query: 88  RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147
           RN  N+        +VVV GC AQ +  E L     V++VVG     RL +L+E    GK
Sbjct: 62  RNNPNA--------VVVVTGCYAQIKPHE-LSTMEEVDLVVGNTHKTRLVDLVEEYLQGK 112

Query: 148 --RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
             RV   +   +   E   +V   Y R R    F+ IQEGC+KFC+FCV+PY RG   S 
Sbjct: 113 GQRVAVENIFRQSTLESFHLVTF-YERSR---PFVKIQEGCNKFCSFCVIPYARGKVRSV 168

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
              +V++E   L   G  E+ + G  ++ +   G D    T   LL  + +I+G+  +R 
Sbjct: 169 PPQKVLEEIHLLAQKGFEEVVITGTQLSQY---GWDM-GTTLGKLLKEMVKIEGIKLIRL 224

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
           ++ HP ++ + L+    + + + P+ HLP+QSGS RIL+ M R +T  EYR++++++   
Sbjct: 225 SSLHPAELEEELLTIITEEEKIAPHFHLPLQSGSLRILQLMERGYTPDEYRRLVEKLVEK 284

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
           RP  AI +D IVGFP ET++DF  T   ++ +  A    F YS R  T  S M  +V  +
Sbjct: 285 RPLSAIGTDVIVGFPTETEEDFEETYRFLESLPIAYMHIFPYSDRPFTKASRMEGKVPSS 344

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK 423
           VK  R+  L++    ++ SF   C G+ +   +   GK
Sbjct: 345 VKDRRVEILKELDTRKRESFRKRCEGKKLRATVLGEGK 382


>gi|257440231|ref|ZP_05615986.1| RNA modification enzyme, MiaB family [Faecalibacterium prausnitzii
           A2-165]
 gi|257197265|gb|EEU95549.1| RNA modification enzyme, MiaB family [Faecalibacterium prausnitzii
           A2-165]
          Length = 441

 Score =  174 bits (441), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 133/448 (29%), Positives = 217/448 (48%), Gaps = 30/448 (6%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N  D   M  +  S G+E V  + +AD+I++NTC   E A  +    +      
Sbjct: 7   SLGCPKNQVDLDVMVHILLSAGHETVADLGEADVILVNTCGFIESAKTEAIENILEACAY 66

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
           K    ++  +L V+V GC+A+    +I    P V+ VVG  +   +  ++ R   G+  +
Sbjct: 67  K----QQNPELKVIVTGCLAERYRSQIEEEIPEVDAVVGCASNKAIDTIVARLFHGENHL 122

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTA---FLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
           ++ Y  +  F        G  R  G  A   +L I EGC+  C +C +P  RG   SR L
Sbjct: 123 ES-YGAKKDFPL------GGKRVIGTPAHYAYLKIAEGCNNRCHYCAIPGIRGPLHSRDL 175

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYT 266
           +  V EAR L   GV E+ ++ Q+  A+   G D G+  +  +LL  L+++ GL  +R  
Sbjct: 176 ADCVAEARWLAGEGVKELIVVAQDPTAY---GEDWGKPGSICELLDKLNKVPGLEWIRIM 232

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
            ++P  ++D  I A    + ++PYL LP+Q  +D ILK+MNRR T  E  ++I ++R   
Sbjct: 233 YAYPERITDDFIAAMKRNEKVVPYLDLPIQHCNDTILKNMNRRSTRAELLEVIGKLRREI 292

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           P I + +  I GFPGET++ F    + V ++ + +   F YS    T  + M  Q+D+  
Sbjct: 293 PGITLRTTLIAGFPGETEEQFEDLCNFVKEVRFDRLGCFAYSAEENTVAAKMDGQIDQET 352

Query: 387 K---AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG----KLVGRSPWLQSVV 439
           K   AE ++ +Q  +  Q+ +     VGQ + VL +   +E G    +  G +P +   V
Sbjct: 353 KDRRAELVMQIQTGIMAQKQAEK---VGQTVRVLCDGIDEESGLYLCRTTGDAPEVDGNV 409

Query: 440 LNSKNHNI--GDIIKVRITDVKISTLYG 465
             S    +  G    V + D  +  LYG
Sbjct: 410 CVSSEEPLYPGQFYDVLVEDSDLYDLYG 437


>gi|254463879|ref|ZP_05077290.1| MiaB-like tRNA modifying enzyme [Rhodobacterales bacterium Y4I]
 gi|206684787|gb|EDZ45269.1| MiaB-like tRNA modifying enzyme [Rhodobacterales bacterium Y4I]
          Length = 420

 Score =  174 bits (441), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 130/442 (29%), Positives = 205/442 (46%), Gaps = 40/442 (9%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  M+++    G E        + +V+NTC +  +A  K    + R+R  
Sbjct: 8   TLGCRLNAYETEAMKELSQQAGLE--------NAVVVNTCAVTAEAVRKARQEIRRLR-- 57

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVV-----VGPQTYYRL---PELLER 142
                +E  D  ++V GC AQ E E       +  V+     +  +T+ ++   P+ +  
Sbjct: 58  -----RENPDAPIIVTGCAAQTEPETFAAMEEVTRVIGNTEKMQAETWQQIAKGPDFIGT 112

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
               K  VD   SV +    L  +DG   R R   A++ +Q GCD  CTFC++PY RG  
Sbjct: 113 TE--KVQVDDIMSVTETAGHL--IDGFGTRSR---AYVQVQNGCDHRCTFCIIPYGRGNS 165

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS-LSEIKGLV 261
            S     V+D+ ++L+D G  E+ L G ++ +W G  L   K    DL+   L  +  L 
Sbjct: 166 RSVPAGVVIDQIKRLVDRGYNEVVLTGVDLTSW-GADLPA-KPRLGDLVMRILKLVPDLP 223

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           RLR ++    +  + L++A      LMP+LHL +Q G D ILK M RRH   +     + 
Sbjct: 224 RLRISSIDSIEADENLMQAIATEPRLMPHLHLSLQHGDDLILKRMARRHLRDDAIAFCEE 283

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
            R +RP++   +D I GFP ET+  F  ++ LV   G      F YS R GTP + +  Q
Sbjct: 284 ARRLRPEMTFGADIIAGFPTETNAHFENSLKLVTDCGLTWLHVFPYSKREGTPAARIPNQ 343

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           V+ NV  ER   L+     Q      A +G+   +L+E         +GR+     V   
Sbjct: 344 VNGNVIKERAARLRAAGDAQVERHLAAQIGKTHRILMEN------PHMGRTEQFTEVAFA 397

Query: 442 SKNHNIGDIIKVRITDVKISTL 463
           +     G I+   IT +  S L
Sbjct: 398 APQEE-GRIVTAEITGIDGSQL 418


>gi|62185140|ref|YP_219925.1| hypothetical protein CAB512 [Chlamydophila abortus S26/3]
 gi|81312696|sp|Q5L5W7|RIMO_CHLAB RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|62148207|emb|CAH63964.1| conserved hypothetical protein [Chlamydophila abortus S26/3]
          Length = 460

 Score =  174 bits (441), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 118/393 (30%), Positives = 195/393 (49%), Gaps = 17/393 (4%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ DS  M  +    GYE    + +AD ++LNTC   + A ++   +L RI N 
Sbjct: 22  SLGCSRNLVDSEVMLGILLKAGYEATELLREADYLILNTCGFLKAARDESTDYLQRIINE 81

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
           K    K      +++ GC+     EE+    P V+ V+G      +   +E    G+++ 
Sbjct: 82  KKETAK------IILTGCMVSKHKEELKPWLPYVHYVLGSGDVEHILSAIESKESGEKLS 135

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
              Y    +  R       Y       A+L I EGC K C FC++P  +G   S+ L QV
Sbjct: 136 SKSYLEMGEVPRKLSTPKHY-------AYLKIAEGCRKRCAFCIIPTIKGGLRSKPLEQV 188

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGL--DGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
           + E R L+  GV EI L+ Q++  + GK L  D + C +S L   L E  G   +R    
Sbjct: 189 MKEFRLLLKMGVKEIILIAQDLGDY-GKDLSKDRKSCLYSVLREMLKE-PGNYWIRMLYL 246

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
           +P ++ D LI        L+PY+ +P+Q  ++R+LK M R  +  +   ++ ++R+  P 
Sbjct: 247 YPDEVDDTLIDLMEKDQRLLPYVDIPLQHINNRVLKKMLRTTSREQILDLLTKLRTRIPH 306

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           I I S  IVGFPGET+++F+  ++ V +        F YS   G+  + M +Q+ ++VK+
Sbjct: 307 IYIRSSLIVGFPGETEEEFQELVNFVGEGWIDNLGIFSYSQEKGSLAAEMPDQIPQSVKS 366

Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKH 421
           +RL  L +  ++     N   VG+I+E +I+ +
Sbjct: 367 KRLKILSQTQKKNVEKHNKQFVGKIVEAVIDGY 399


>gi|316968295|gb|EFV52591.1| putative radical SAM domain protein [Trichinella spiralis]
          Length = 542

 Score =  174 bits (441), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 134/458 (29%), Positives = 230/458 (50%), Gaps = 31/458 (6%)

Query: 22  IVPQRF--FVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEK 79
            +P  F  +VK++GC  N  DS  M  +  S GY  V+    AD+ +LN+C ++  + + 
Sbjct: 47  FIPGAFSVYVKTWGCTHNSSDSEYMAGLMSSAGYGIVDDPSVADIWLLNSCTVKTPSEQH 106

Query: 80  VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVV--VGPQTYYRLP 137
           V + L + R L            V+V+GCV QAE        P +  V  VG Q   R+ 
Sbjct: 107 VQNELEKARALNKP---------VIVSGCVPQAEPS-----IPWLQGVSLVGIQQIDRIV 152

Query: 138 ELLERARFGKRVVDTDYS-VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
           E++E    G  V   +Y  V+ K    + +D    R+  +   + I  GC   CT+C   
Sbjct: 153 EVVEETLKGNTVQLLNYKKVKGKRTAGARLDLPKVRRNPLVEIIAINTGCLNNCTYCKTK 212

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS- 255
             RG   S S+ +++D A   I  GV EI L  +++ A+ G+ +D   CT  +LL +L+ 
Sbjct: 213 KARGNLASYSIEEIIDRAESCISEGVKEIWLTSEDLGAY-GRDID---CTLPELLKALTA 268

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDL---DVLMPYLHLPVQSGSDRILKSMNRRHTA 312
           ++   V LR   ++P       ++  G++     +  +LH+PVQSGSD +L+ M R +  
Sbjct: 269 KLPDGVMLRLGMTNPPFHIPISVQEIGEILNHPCVYSFLHIPVQSGSDAVLRDMRREYNV 328

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
            ++  +++ +R   P I I++D I GFP ET+ DF+ T+DLV+K  +A  F  ++ PR G
Sbjct: 329 DDFCAVVEFMRKKVPGITIATDVICGFPTETEQDFKDTLDLVEKYRFASLFINQFYPRPG 388

Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKGKLVGR 431
           TP +  L+++D  V  +R   + +     +   N   VG   +VLI E+  +    LVG 
Sbjct: 389 TPAAK-LKRLDTAVVKDRTRRMTQLFNSYEPYRNR--VGLKYQVLITERSFRGDDYLVGH 445

Query: 432 SPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
           + + + +++ ++ + +G  + V+I      ++ GEL  
Sbjct: 446 NKFYEQILVANQPNLLGKKVWVKIVSCSKHSMVGELTA 483


>gi|282857132|ref|ZP_06266378.1| conserved hypothetical protein [Pyramidobacter piscolens W5455]
 gi|282585067|gb|EFB90389.1| conserved hypothetical protein [Pyramidobacter piscolens W5455]
          Length = 436

 Score =  174 bits (441), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 122/417 (29%), Positives = 207/417 (49%), Gaps = 38/417 (9%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +R  +++ GC+ N+ ++  +   F  +G   V+     D  V+ TC +   A  K    +
Sbjct: 12  RRVAIQALGCRTNLAEAEALASAFQRRGALIVDE-PPYDAAVIVTCSVTAVADRKSRQLI 70

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R R       + G ++ V V GC AQ  GE+    +  V++++G +    LP+ + R  
Sbjct: 71  NRCR-------RAGENVCVAVCGCWAQGVGEKKAA-AMGVDLLIGNRFKGELPDRVAR-- 120

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGV----------TAFLTIQEGCDKFCTFCV 194
                      +ED+      V G   R+              AF+ +Q+GCD  CT+C+
Sbjct: 121 ----------WLEDRARSFEAVRGDMGRRWDSLELDRSPYFGRAFVKVQDGCDHRCTYCI 170

Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL 254
           VP  RG  +SR ++ ++ EAR+    G  E+ L G ++  +   G D  + +F+ L+ +L
Sbjct: 171 VPVLRGPSVSRPVADILAEARRCAAAGQFELILTGVHLGLF---GRDSGE-SFAALVRAL 226

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
             ++G+ RLR+ +  P  + D L++A         +LHLPVQSG D IL+ M R HTA +
Sbjct: 227 DSVEGIQRLRFGSLEPFSIGDDLLEALAQSPRFCRHLHLPVQSGDDEILRRMGRGHTAAD 286

Query: 315 YRQIIDRIR-SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
           Y ++++R+R ++  D+ IS+D +  FPGE++  F  T+ L+      +   F YSPR GT
Sbjct: 287 YLKLVERLRAALGSDLHISTDVMCAFPGESETAFENTLALLKAARVGRVHGFHYSPRPGT 346

Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG 430
           P + M  Q+   +   R   L+K  RE   +     +G+ +EVL E  G  +G+  G
Sbjct: 347 PAAAMSGQIPTEIALARAERLKKAGRECLAAEARRWIGREVEVLFE--GAHRGRAQG 401


>gi|30248915|ref|NP_840985.1| hypothetical protein NE0911 [Nitrosomonas europaea ATCC 19718]
 gi|75540795|sp|Q82VY8|RIMO_NITEU RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|30138532|emb|CAD84822.1| Uncharacterized protein family UPF0004 [Nitrosomonas europaea ATCC
           19718]
          Length = 447

 Score =  174 bits (441), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 137/462 (29%), Positives = 220/462 (47%), Gaps = 48/462 (10%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           +P+  FV S GC     DS R+     ++GY    S  DADL+V+NTC   + A  +   
Sbjct: 14  IPRVGFV-SLGCPKATVDSERILTCLRAEGYLISPSYADADLVVVNTCGFIDSAVAESLE 72

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRS-PIVNVVVGPQTYYRLPELLE 141
            +G         + E G   V+V GC+   E  +++R++ P V  V GPQ    + + + 
Sbjct: 73  TIGEA-------LTENGK--VIVTGCLGAKE--DVIRQAHPSVLAVTGPQATEEVMQAIH 121

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           R    K          D +  L +   G        A+L I EGC+  CTFC++P  RG 
Sbjct: 122 R-HLPKP--------HDPYLDL-VPPQGIKLTPKHYAYLKISEGCNHRCTFCIIPSMRGD 171

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDL 250
            +SR +  V+ EA+ L+D GV E+ ++ Q+ +A           W+G+ +   +   ++L
Sbjct: 172 LVSRPVGNVLQEAQNLVDAGVRELLIISQDTSAYGVDIKYRTGFWQGRPI---RSRITEL 228

Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
             +L E+   +RL Y   +P       + A G L   +PYL +P Q GS RILK M R  
Sbjct: 229 ARALGELGIWIRLHYVYPYPHVDELIPLMAEGKL---LPYLDIPFQHGSKRILKLMKRPA 285

Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370
            +      I + R + PDIA+ S FIVGFPGET+ +F   +  +++    +  +F YSP 
Sbjct: 286 NSENVLARIRQWRDICPDIALRSTFIVGFPGETEQEFEELLAFLEEAQLDRVGAFAYSPV 345

Query: 371 LGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG 430
            G   + + + V   ++ ERL  L +   E          G+I++VL++    ++  ++ 
Sbjct: 346 KGAAANALPDPVPSEIQQERLARLMQWQEEISKKRLAGKKGRILKVLVDT--VDENGVIA 403

Query: 431 RS----PWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGE 466
           RS    P +  VV    + +I  GD + VRIT   I  L+ +
Sbjct: 404 RSYADAPEIDGVVYIEPDFSIKPGDWVDVRITRTGIHDLWAK 445


>gi|304312821|ref|YP_003812419.1| hypothetical protein HDN1F_32010 [gamma proteobacterium HdN1]
 gi|301798554|emb|CBL46784.1| Conserved hypothetical protein [gamma proteobacterium HdN1]
          Length = 448

 Score =  174 bits (441), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 130/422 (30%), Positives = 206/422 (48%), Gaps = 43/422 (10%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           Q+    S GC   + DS R+       GYE V + ++AD++V+NTC   + A ++    +
Sbjct: 13  QKVGFISLGCPKALVDSERILTQLRIDGYEIVPTYENADIVVVNTCGFIDAAKQESLDAI 72

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           G     +N R        V+V GC+  A+  +I    P V  V GPQ Y  +   + +  
Sbjct: 73  GEALT-ENGR--------VIVTGCMG-ADAAKIREVHPKVLAVTGPQAYEEVVSAVHQ-- 120

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
                V T     + F  L I   G        A+L I EGC+  CTFC++P  RG  +S
Sbjct: 121 ----YVPTQLG-HNPFIDL-IPPTGIKLTPRHYAYLKISEGCNHRCTFCIIPSMRGDLVS 174

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYS 253
           R +  V+ EA++L+D G  E+ ++ Q+ +A           W G+ +   K   +DL  +
Sbjct: 175 RPIGDVMGEAKRLVDAGTQELLIISQDTSAYGVDLKYRTGFWDGRPV---KTKLTDLCEA 231

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
           L E+   VRL Y   +P       + A G    ++PYL +P Q GS RIL+ M R     
Sbjct: 232 LGELGVWVRLHYVYPYPHVDHIIPMMAEGK---ILPYLDIPFQHGSPRILQLMKRPGDID 288

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
                I + R++ PD+ + S FIVGFPGET+ DF+  +D +++    +  +F YSP  G 
Sbjct: 289 NTLSRIHQWRNICPDLTLRSTFIVGFPGETEGDFQQLLDFIEEAQLDRVGAFAYSPVEGA 348

Query: 374 PGSNMLEQVDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG 430
             + + + V E +K ERL   + +Q ++   ++      +G+ IEVLI++  +E    VG
Sbjct: 349 TANALPDPVPEELKQERLARFMEVQARISADKLQKK---IGKRIEVLIDEVDEEGA--VG 403

Query: 431 RS 432
           RS
Sbjct: 404 RS 405


>gi|309389274|gb|ADO77154.1| SSU ribosomal protein S12P methylthiotransferase [Halanaerobium
           praevalens DSM 2228]
          Length = 445

 Score =  174 bits (441), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 120/450 (26%), Positives = 228/450 (50%), Gaps = 21/450 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTC-HIREKAAEKVYSF 83
           ++ + + GC  N  DS  M       +G++  +   +A++I++NTC  I++   E + + 
Sbjct: 3   KYSLMTLGCPKNEVDSQHMNGFLRGDKGFKYTSEFKEAEVIIINTCGFIQDAKEESIETI 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           L  +   K    K      V+V GC+ Q   EE+ +  P ++ ++G   + ++ ++++  
Sbjct: 63  LTALEYKKEYNCKS-----VIVTGCLTQRYSEELKKDIPEIDAILGTSNFDQIVDVIKET 117

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             G   ++T    +  F+  S +    +    V A+L I EGC+  CT+C +P  RG   
Sbjct: 118 LAG---IETGGITKAGFDYSSSLPRELDN--NVYAYLKIAEGCNNNCTYCSIPQIRGPIK 172

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVR 262
           SRS++ +V EA+++ ++G+ E+ ++ Q+   +   G+D  E+   + LL  L+EI+ L  
Sbjct: 173 SRSIADIVAEAKEIAESGIKELIIIAQDTTQY---GVDIYERSALAPLLKKLAEIEELKW 229

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R   S+P  ++D +I    + + +  Y  LP+Q  S +I K MNR+    +   II++I
Sbjct: 230 IRVLYSYPEFITDEIIDVFAEEEKICNYFDLPIQHSSKKIRKLMNRKGNQEDIANIINKI 289

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+  PD  + +  I GFPGET+ DF      + K  + +  +F++S   GT    +  +V
Sbjct: 290 RNKIPDAKLRTSLITGFPGETESDFENLKKFIKKYKFDRLGAFEFSREEGTAAYKLDNRV 349

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR--SPWLQS--- 437
              VKAER   + +  +E  ++ N   +G+ +EV+IE + +E      R  SP + +   
Sbjct: 350 PAAVKAERKEEIMQLQQEISLAKNKELIGRKLEVIIEDYDQENYLARSRYDSPEIDNQIY 409

Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
           + +  +   IG+I +  I +     L GE+
Sbjct: 410 IPIKKQKLEIGEIYQAEIKEAFHYDLIGEI 439


>gi|24375559|ref|NP_719602.1| MiaB-like putative RNA modifying enzyme YliG [Shewanella oneidensis
           MR-1]
 gi|81459191|sp|Q8EA37|RIMO_SHEON RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|24350441|gb|AAN57046.1|AE015838_8 MiaB-like putative RNA modifying enzyme YliG [Shewanella oneidensis
           MR-1]
          Length = 481

 Score =  174 bits (441), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 139/454 (30%), Positives = 219/454 (48%), Gaps = 42/454 (9%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ DS R+       GYE  NS D+ADL+++NTC   + A E+    L  +R  
Sbjct: 44  SLGCPKNLVDSERILTQLRIDGYEVTNSYDNADLVIVNTCGFIDAAVEES---LDAVREA 100

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               ++E G   V+V GC+   E  +I    P V  + GP +Y  +          K V 
Sbjct: 101 ----LEENGK--VIVTGCLGAKEN-QIREVHPDVLEITGPHSYEAV-----LKHVHKYVP 148

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
             ++   + F  L I   G        A+L I EGCD  CTFC++P  RG   SR    V
Sbjct: 149 KPEH---NPFTSL-IPQTGVKLTPKHYAYLKISEGCDNRCTFCIIPALRGDLDSRGAGSV 204

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE---------KCTFSDLLYSLSEIKGLV 261
           +DEA++L++ GV EI ++ Q+ +A+ GK   G          K   + L   L ++   V
Sbjct: 205 LDEAKRLVEAGVQEILVVSQDTSAY-GKDKGGRTDFWNGMPVKQDITSLARQLGKMGAWV 263

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           RL Y   +P       + A G   +++PYL +P+Q  S RILK M R        + I R
Sbjct: 264 RLHYIYPYPWVDDLIPLMAEG---LILPYLDIPMQHASPRILKMMKRPGRVDRQLEAIQR 320

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
            R + PD+ I S FIVGFPGET++DF   +D + +    +   FKYS   G   + + E 
Sbjct: 321 WREICPDLVIRSTFIVGFPGETEEDFEMLLDFLREARLDRVGCFKYSEVEGAVANTIAEL 380

Query: 382 VDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPWLQ 436
           + E VK +   R + +Q ++  ++++     VG+ +++LI+   +E   G+    +P + 
Sbjct: 381 ISEEVKEDRYHRFMEVQAEISAERLA---RFVGRTMDILIDDVDEEGAIGRSFADAPEID 437

Query: 437 SVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468
            +V  +    +  G +++  IT      L+ ELV
Sbjct: 438 GMVFINGETELEPGMLVRAVITHSDEHDLWAELV 471


>gi|148653600|ref|YP_001280693.1| ribosomal protein S12 methylthiotransferase [Psychrobacter sp.
           PRwf-1]
 gi|238066576|sp|A5WGF2|RIMO_PSYWF RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|148572684|gb|ABQ94743.1| MiaB-like tRNA modifying enzyme YliG [Psychrobacter sp. PRwf-1]
          Length = 524

 Score =  174 bits (441), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 125/428 (29%), Positives = 205/428 (47%), Gaps = 34/428 (7%)

Query: 20  QCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEK 79
           + + P+  FV S GC   + DS R+       GY   +  + ADL+V+NTC   E A ++
Sbjct: 63  ETVAPKVGFV-SLGCPKALVDSERIITELTRDGYRVASDYNGADLVVVNTCGFIESAVQE 121

Query: 80  VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL 139
               +G   N KN +        V+V GC+ + + ++I    P V  V G   Y  +   
Sbjct: 122 SLDAIGEALN-KNGK--------VIVTGCLGK-DAQKIRDMHPAVLAVTGAHAYDEVITA 171

Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           +       + +    + + K + + +   G        A+L I EGC+  CTFC++P  R
Sbjct: 172 VSTHAPMPQAIQDKKAYDPKIDLIDL--AGVKLTPSHYAYLKISEGCNHRCTFCIIPSLR 229

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFS 248
           G  +SR + QV+ EA  L   GV EI ++ Q+ +A           W G  L   K  F 
Sbjct: 230 GDLLSRPIEQVMGEAMALKKAGVKEILVISQDTSAYGVDLKYKTSFWDGMPL---KSKFF 286

Query: 249 DLLYSLSEIKGLVRLRYTTSHPR-DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307
           D+  +L+++   VRL Y   +P  D    L+   GD   L+PYL +P+Q  S  +LK+M 
Sbjct: 287 DMCQALAKVGIWVRLHYVYPYPHVDKVVELMAKPGDRGGLLPYLDIPLQHASPSVLKAMK 346

Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           R   +      I + R + PDI I S F+VGFPGET++DF   ++ + +    +   F Y
Sbjct: 347 RPAHSENTLARIQKWREINPDIVIRSTFVVGFPGETEEDFEYLLEWLKQAKLDRVGCFTY 406

Query: 368 SPRLGTPGSNMLEQVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE 424
           S   G   +++   V E +K    ER + +Q+++ EQ++      VG+ + VL+++   E
Sbjct: 407 SEIEGAVANDLPNPVPEAIKQERYERFMAVQQQISEQKLQEK---VGKTMTVLVDEIDTE 463

Query: 425 KGKLVGRS 432
           +   + RS
Sbjct: 464 EQIAICRS 471


>gi|332879760|ref|ZP_08447450.1| ribosomal protein S12 methylthiotransferase RimO [Capnocytophaga
           sp. oral taxon 329 str. F0087]
 gi|332682279|gb|EGJ55186.1| ribosomal protein S12 methylthiotransferase RimO [Capnocytophaga
           sp. oral taxon 329 str. F0087]
          Length = 434

 Score =  174 bits (441), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 136/451 (30%), Positives = 218/451 (48%), Gaps = 39/451 (8%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC-HIREKAAEKVYSFLGRI 87
           V + GC  NVYDS  +     + G   V+  +  +++V+NTC  I     E + + L  +
Sbjct: 13  VVTLGCSKNVYDSEVLMGQLKAGGKNVVHEQE-GNIVVINTCGFINNAKEESINTILDYV 71

Query: 88  RNLKNSRIKEGGDL-LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           +       KE G +  V V GC+++    ++ +  P V+   G      LP LL      
Sbjct: 72  QQ------KEAGLIDKVFVMGCLSERYKPDLEKEIPDVDQYFGTS---ELPALL------ 116

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
            +V+  DY  E   ERL+     Y       A+L I EGCD+ C+FC +P  RG  IS  
Sbjct: 117 -KVLGADYKHELIGERLTTTPKNY-------AYLKISEGCDRPCSFCAIPLMRGAHISTP 168

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRY 265
           +  +V EA KL   GV E+ L+ Q++  +   GLD  +K   +DLL +L +++G+  +R 
Sbjct: 169 IEALVTEAEKLAAKGVKELILIAQDITYY---GLDLYKKRALADLLRALVKVEGIEWIRI 225

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
             + P      +I+   +   +  YL +P+Q  SD IL SM R  T  +  +++ + R  
Sbjct: 226 HYAFPTGFPMDVIEVMKEEPKICNYLDIPLQHISDPILASMKRGTTQEKTTKLLKKFREA 285

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P++AI +  IVG+PGET  DF A    V ++ + +   F YS    T   ++ + V E 
Sbjct: 286 MPEMAIRTTLIVGYPGETQADFEALKFFVKEMRFDRLGCFTYSHEENTTAYDLEDDVPEE 345

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPW-----LQSVVL 440
           VK  R   + +   +     N   VG+    LI++  KE    VGR+ +        V++
Sbjct: 346 VKLARANEIMEIQSQISWELNQQKVGKTFRCLIDR--KEGNYFVGRTEYDSPDVDNEVLI 403

Query: 441 NSKNHNI--GDIIKVRITDVKISTLYGELVV 469
           ++K H +  GD ++V+I D     LYGE VV
Sbjct: 404 DAKKHYVKTGDFVEVKIIDATDYDLYGEPVV 434


>gi|260494169|ref|ZP_05814300.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Fusobacterium sp. 3_1_33]
 gi|260198315|gb|EEW95831.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Fusobacterium sp. 3_1_33]
          Length = 435

 Score =  174 bits (440), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 124/449 (27%), Positives = 228/449 (50%), Gaps = 40/449 (8%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  +++    +GYE V     +D+ ++N+C +   A  K  + L R + +
Sbjct: 11  TLGCKVNQYETESIKNQLIKRGYEEVPFEGKSDIYIINSCTVTSIADRKTRNMLRRAKKI 70

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILR------------RSPIVNVVVGPQTYYRLPE 138
                    +  V+V GC AQ    EIL             +S IVN V   +       
Sbjct: 71  -------NPNAKVIVTGCYAQTNSREILEIEDVDFVIDNKNKSNIVNFVEAIEDIS---- 119

Query: 139 LLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
             ER + G    + +Y  E +F  L         +    A++ IQ+GC+ FC++C +P+ 
Sbjct: 120 -FEREKNGNIFQEKEYQ-EYEFATL---------REMTRAYVKIQDGCNHFCSYCKIPFA 168

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258
           RG   SR    ++ E  KL+++G  E+ L+G +++A+ G+  + EK +F  LL  + +I+
Sbjct: 169 RGKSRSRKKENILKEIEKLVEDGFKEVILIGIDLSAY-GEDFE-EKDSFESLLEDILKIR 226

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
            L R+R  + +P  ++D  I+   + + LMP+LH+ +QS  D +LK+M R + +   R  
Sbjct: 227 DLKRVRIGSVYPDKITDRFIELFKNKN-LMPHLHISLQSCDDTVLKNMRRNYGSLLIRDN 285

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           + +++S   ++  ++D IVGFP E +  F+ T D++ +I ++    F+YS R GT  SNM
Sbjct: 286 LLKLKSKIKNMEFTADVIVGFPKEDETMFQNTYDVIREIKFSGLHIFQYSDREGTIASNM 345

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSP-WLQS 437
             +VD   K +R   L    +E  +      + + +EVL+E+   + G+  G S  +L+ 
Sbjct: 346 DGKVDAKTKKQRADRLDSLKQEMLIESRKKYLEKNLEVLVEEE--KDGEYFGYSQNYLRV 403

Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGE 466
              + +   I  +I ++I  ++ + L GE
Sbjct: 404 KFKSDEKELINKLINIKIKCIENNVLIGE 432


>gi|90424119|ref|YP_532489.1| hypothetical protein RPC_2620 [Rhodopseudomonas palustris BisB18]
 gi|123275201|sp|Q214L6|RIMO_RHOPB RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|90106133|gb|ABD88170.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB18]
          Length = 441

 Score =  174 bits (440), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 133/469 (28%), Positives = 218/469 (46%), Gaps = 48/469 (10%)

Query: 18  VDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA 77
           ++Q   P+  FV S GC   + DS R+     ++GYE     D ADL+++NTC   + A 
Sbjct: 1   MNQAAAPKVSFV-SLGCPKALVDSERIITRLRAEGYELARKHDGADLVIVNTCGFLDSAK 59

Query: 78  EKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLP 137
           ++    +G                 V+V GC+  AE E+I    P +  + GPQ Y  + 
Sbjct: 60  KESLGAIGEAMAANGK---------VIVTGCMG-AEPEQIEAAYPNLLSITGPQQYESVL 109

Query: 138 ELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197
           + + RA         D           +   G        A+L I EGC+  C+FC++P 
Sbjct: 110 DAVHRALPPLHNPHLDL----------VPAQGIKLTPRHYAYLKISEGCNNRCSFCIIPK 159

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCT 246
            RG  +SR   +V+ EA KL+  GV E+ ++ Q+ +A           W+ + +   +  
Sbjct: 160 LRGDLVSRPAGEVLREAEKLVKAGVKELLVVSQDTSAYGVDLKYAESPWQDRNV---RAR 216

Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306
           F DL   L E+   VRL+Y   +P       + A G +   +PYL +P Q  S  +LK M
Sbjct: 217 FYDLAKELGELGAWVRLQYVYPYPHVDEVIGLMAQGKV---LPYLDIPFQHASPEVLKQM 273

Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
            R     +    I + R + P++ + S FIVGFPGETD DF   +D +++    +  +FK
Sbjct: 274 KRPAAQDKTLARIKQWREICPELTLRSTFIVGFPGETDSDFAYLLDWLEQAEIDRVGAFK 333

Query: 367 YSPRLGTPGSNMLEQVDENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK 423
           Y    G   + + +QV + VK ER   L+  Q+K+  +++      VG   +V+I++ G 
Sbjct: 334 YEAVRGATSNALPDQVSDEVKTERWNALMARQQKISARRLKRK---VGTRQQVIIDEVGP 390

Query: 424 --EKGKLVGRSPWLQ-SVVLNSKNH-NIGDIIKVRITDVKISTLYGELV 468
              KG+    +P +  SV L S+    +G+I+  +I       L+G + 
Sbjct: 391 TVSKGRSKADAPQIDGSVYLTSRRPLRVGEIVTAKIERADAYDLHGSVA 439


>gi|328675517|gb|AEB28192.1| Ribosomal protein S12p Asp88 methylthiotransferase [Francisella cf.
           novicida 3523]
          Length = 439

 Score =  174 bits (440), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 131/457 (28%), Positives = 217/457 (47%), Gaps = 52/457 (11%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           +P+  FV S GC  N+ DS R+     ++GY+ V+S D+AD++++NTC     A ++   
Sbjct: 4   IPKIGFV-SLGCPKNLVDSERIITKLKAEGYDLVDSYDNADMVIVNTCGFLNSAIDESLE 62

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +G         I E G +LV   GC+   + + I  + P V  + GPQ Y  L   +E 
Sbjct: 63  VIGE-------AIAENGKVLV--TGCLGN-KADLIKEKHPEVLSITGPQDYENL---IEA 109

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
                 +   D+      + + +    Y       ++L I EGC+  CTFC++P  RG  
Sbjct: 110 VHTHAPIFANDFVSLVPPQGIKLTPRHY-------SYLKISEGCNNTCTFCIIPDIRGKL 162

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLL 251
            SRS+  ++ EA KL + GV E+ ++ Q+ +A           W  K     +    DL 
Sbjct: 163 KSRSIDNIMKEAEKLKNAGVKELLVISQDTSAYGVDIKYKPGVWNNKEY---QSNIIDLA 219

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
            +L ++    RL Y   +P       + A G +   +PYL +P+Q  S  +LK M R   
Sbjct: 220 TALGDLDMWTRLHYVYPYPHVDKIVPLMAQGKI---LPYLDVPLQHSSPEVLKRMKRPAH 276

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
             +    I++ R + PDI I S FIVGFPGET++DF   +D  +K    +   FKYS   
Sbjct: 277 TQKTLDRINKWRDICPDITIRSTFIVGFPGETEEDFEHLLDFAEKAQLDRVGCFKYSEVE 336

Query: 372 GTPGSNMLEQVDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL 428
           G   +     + E VK +RL   + LQ ++   ++      VG   +++I+   KE+   
Sbjct: 337 GAKANQFDNLISEEVKQQRLDEFMGLQAQISADKLQ---RFVGTEQQIIIDVINKEENYA 393

Query: 429 VGRSPWL------QSVVLNS--KNHNIGDIIKVRITD 457
           +GR+ +       Q ++ ++  +N  +G+  KV IT+
Sbjct: 394 IGRTKYDAPEVDGQVIIGDALERNLKVGEFAKVEITE 430


>gi|291459579|ref|ZP_06598969.1| RNA modification enzyme, MiaB-family [Oribacterium sp. oral taxon
           078 str. F0262]
 gi|291417857|gb|EFE91576.1| RNA modification enzyme, MiaB-family [Oribacterium sp. oral taxon
           078 str. F0262]
          Length = 426

 Score =  174 bits (440), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 141/458 (30%), Positives = 220/458 (48%), Gaps = 54/458 (11%)

Query: 26  RFFVKSYGCQMNVYDS--LRMEDMFFSQGYERVNSMDDADLIVLNTCH-IREKAAEKVYS 82
           + ++ S GC  N  DS  L    +    G    +  ++A+L ++NTC  I     E + +
Sbjct: 2   KLYMVSLGCDKNRVDSEKLLSSLLLKHPGSSVTDDPEEAELAIVNTCSFIGPAKEESIQT 61

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYY-RLPELLE 141
            L      K +R+++     ++VAGC+A+   EEI +  P V+ V+G   Y  RL   +E
Sbjct: 62  ILALGEYKKTARLQK-----LLVAGCLAERYREEIRKELPEVDEVIGVSDYVSRLDLQME 116

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           R   G++  D                           +L I EGCDK+C++C++P  RG 
Sbjct: 117 RVASGEQYSD---------------------------YLKIAEGCDKYCSYCIIPKLRGH 149

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
             S  +  ++ EA +L   GV E+ L+ Q    + G  L G+K    +L+  LS ++G+ 
Sbjct: 150 YRSIPMEHLLREAEQLSLRGVKELNLVAQETTLY-GTDLYGKKA-LPELIQRLSAVEGIE 207

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
            +R    +P ++   LI+   D   L  YL LP+Q  SDRIL  M RR  A E R+ I  
Sbjct: 208 WIRLLYCYPEEIELPLIREIRDNAKLCHYLDLPIQHASDRILGRMRRRTRASELREKIAL 267

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R   PDI + +  I GFPGE+++DFR  +D   ++ + +   F YS   GT  + M  Q
Sbjct: 268 LRREIPDITLRTTLITGFPGESEEDFRELLDFTRELRFDRLGVFPYSREEGTAAAEMEGQ 327

Query: 382 VDENVKAERLLCLQKKLRE--QQVSFNDA--CVGQIIEVLIEKHGKEKGKLVGRS----P 433
           + E +K ER     KKL E  Q ++F  A   +G+ + VLI  +       + RS    P
Sbjct: 328 LPEKLKRERW----KKLMELQQGIAFEKAKEQIGRRLRVLITAYDPGAKHYIARSYMDAP 383

Query: 434 WLQSVVL----NSKNHNIGDIIKVRITDVKISTLYGEL 467
            + S V     + +N   GD+ +VRIT  +   L GEL
Sbjct: 384 EIDSFVYVNAGSRRNLLAGDMRQVRITGSRGYDLIGEL 421


>gi|304411575|ref|ZP_07393188.1| MiaB-like tRNA modifying enzyme YliG [Shewanella baltica OS183]
 gi|307306649|ref|ZP_07586391.1| MiaB-like tRNA modifying enzyme YliG [Shewanella baltica BA175]
 gi|304350102|gb|EFM14507.1| MiaB-like tRNA modifying enzyme YliG [Shewanella baltica OS183]
 gi|306910617|gb|EFN41046.1| MiaB-like tRNA modifying enzyme YliG [Shewanella baltica BA175]
          Length = 472

 Score =  174 bits (440), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 138/454 (30%), Positives = 222/454 (48%), Gaps = 42/454 (9%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ DS R+       GYE  NS  +ADL+++NTC   + A E+    L  +R  
Sbjct: 39  SLGCPKNLVDSERILTQLRIDGYEVTNSYANADLVIVNTCGFIDAAVEES---LDAVREA 95

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               ++E G   V+V GC+   E  +I    P V  + GP +Y  +          K V 
Sbjct: 96  ----LEENGK--VIVTGCLGAKEN-QIREVHPDVLEITGPHSYEAV-----LKHVHKYVP 143

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
             ++   + F  L I   G        A+L I EGCD  CTFC++P  RG   SR    +
Sbjct: 144 KPEH---NPFTSL-IPQTGVKLTPKHYAYLKISEGCDNRCTFCIIPSLRGDLDSRPAGSI 199

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE---------KCTFSDLLYSLSEIKGLV 261
           +DEA++L+++GV EI ++ Q+ +A+ GK   G          K   + L   L ++   V
Sbjct: 200 LDEAKRLVESGVQEILVVSQDTSAY-GKDKGGRTDFWNGMPVKQDITSLARQLGKMGAWV 258

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           RL Y   +P    D LI    +  +++PYL +P+Q  S RILK M R        + I R
Sbjct: 259 RLHYIYPYP--WVDDLIPLMAE-GLILPYLDIPMQHASPRILKMMKRPGRVDRQLEAIQR 315

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
            R + PD+ I S FIVGFPGET++DF+  +D + +    +   FKYS   G   + + E 
Sbjct: 316 WREICPDLVIRSTFIVGFPGETEEDFQILLDFLKEARLDRVGCFKYSEVDGAVANTIAEL 375

Query: 382 VDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPWLQ 436
           + E VK +   R + +Q ++  ++++     VG+ +++LI+   +E   G+    +P + 
Sbjct: 376 ISEEVKEDRYHRFMEVQAEISAERLA---RFVGRTLDILIDDVDEEGAIGRSFADAPEID 432

Query: 437 SVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468
            +V  +    +  G +++ RIT      L+ E+V
Sbjct: 433 GMVFINGETELEPGMLVRARITHSDEHDLWAEVV 466


>gi|153874656|ref|ZP_02002792.1| conserved hypothetical protein [Beggiatoa sp. PS]
 gi|152068880|gb|EDN67208.1| conserved hypothetical protein [Beggiatoa sp. PS]
          Length = 443

 Score =  174 bits (440), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 140/467 (29%), Positives = 222/467 (47%), Gaps = 52/467 (11%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           +P+  F+ S GC     DS R+     ++GY   +  +DA L+V+NTC   + A E+   
Sbjct: 7   LPKIGFI-SLGCPKATVDSERILTQLRAEGYLITSRYEDAHLVVVNTCGFIDDAVEESLE 65

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +G         + E G   V+V GC+  A GE I  R P V  V GP     L E++  
Sbjct: 66  VIGE-------ALAENGK--VIVTGCLG-ARGEMIKNRFPNVLAVTGPNA---LDEVI-- 110

Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
                  + T+   + D +  L +  GG        A+L I EGC++ C+FC++P  RG 
Sbjct: 111 -----TAIHTELPPQHDPYLDL-VPPGGIKLTPRHYAYLKIAEGCNQKCSFCIIPTMRGR 164

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDL 250
            +S+ +  ++DEA  LI+ GV E+ ++ Q+  A           W+G  L   K   ++L
Sbjct: 165 LVSQPIGALLDEAEHLIEAGVRELLIVSQDTAAYGVDTKYRLDFWQGTPL---KTRITEL 221

Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
              L  +   VRL Y   +P    D L++   + D+++PYL +P+Q  +  ILK+M R  
Sbjct: 222 ARHLGNLSAWVRLHYVYPYPH--IDQLVELMAE-DLVLPYLDVPLQHANPTILKAMRRPA 278

Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370
                 + I   R + PDI + S FIVGFPGETD  F   +  + +    +  +F YSP 
Sbjct: 279 DNEMMLRRIAHWREICPDITLRSTFIVGFPGETDAAFEDLLAFIREARLDRVGAFAYSPV 338

Query: 371 LGTPGSNMLEQVDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE--K 425
            G   +++ + V E +K ERL   + +Q  +  +++    A VGQ   VLI++   E   
Sbjct: 339 EGATANSLPDAVPEEIKQERLARFMTMQSTISAEKLQ---ARVGQTNIVLIDEVMPEVIY 395

Query: 426 GKLVGRSPWLQSVVLNSKNHNI----GDIIKVRITDVKISTLYGELV 468
            + V  +P +   V+      +    GD I+V IT      LY E+V
Sbjct: 396 ARSVAEAPEIDGTVIIKTEEELDLDPGDFIEVTITGADEHDLYAEVV 442


>gi|297570482|ref|YP_003691826.1| MiaB-like tRNA modifying enzyme YliG [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296926397|gb|ADH87207.1| MiaB-like tRNA modifying enzyme YliG [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 463

 Score =  174 bits (440), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 132/468 (28%), Positives = 217/468 (46%), Gaps = 38/468 (8%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEK-VYSFLGRI 87
           + S GC  N+ DS  M      +G   V+   +AD++++NTC   + A E+ + + LG I
Sbjct: 6   LTSLGCPKNLVDSELMLGQLVEEGLRPVSEPGEADVLLVNTCGFIQSAVEEGIDTILGLI 65

Query: 88  RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147
              K+  ++      VVV GC+ Q  G  ++   P V++ +G +    +   L     G+
Sbjct: 66  EQKKSPAVR------VVVCGCLVQRYGSGLVEELPEVDLFLGTEEVSSIAARLRALEEGR 119

Query: 148 RVVDTD-------------YSVEDKFERLSIVDGGYNRKRGVTA---FLTIQEGCDKFCT 191
              ++              Y   D  +R  + +    R+    A   +L I EGC   C+
Sbjct: 120 AAPESGSVPAGAPAADSLRYRPVDDLQRF-LPNATLPRRLTTPAHRAYLKITEGCGNRCS 178

Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLL 251
           +C++P  RG   SR  + ++ EAR L   GV E+TL+ Q++ A+ G  L        DLL
Sbjct: 179 YCMIPAIRGPLRSRRPADILHEARALAAAGVKELTLVAQDLTAY-GLDLGPGGPRLPDLL 237

Query: 252 YSLS-EIKG----LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306
             L  E+       +RL Y   +P  ++D L++       ++PY  LP Q  +D +LK+M
Sbjct: 238 AQLHRELPAAQVPWIRLLYL--YPSRVNDELLELVAANPRILPYFDLPFQHVADPVLKAM 295

Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
           NR +     R+++DR+R + P   I S F+VGFPGE ++D  A    +          F 
Sbjct: 296 NRPYGEALVRELVDRVRRLVPRAVIRSTFMVGFPGEREEDVEALAAFLRDCRLEHVGMFT 355

Query: 367 YSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG 426
           Y    G+  + +  QV E +K +R   L     E  ++ N A VGQ+ EVL+E    E  
Sbjct: 356 YCNEEGSAAATLPGQVPEELKEQRFQRLMALQAEISLAANQARVGQVEEVLVEGVSSETE 415

Query: 427 KLVGRSPWLQS------VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            L+    W Q+      V +N  N   G++++V I++     L G +V
Sbjct: 416 LLLEGRAWFQAPEIDGCVYINEGNCRAGELVRVLISEAHPYDLVGGIV 463


>gi|23502783|ref|NP_698910.1| hypothetical protein BR1933 [Brucella suis 1330]
 gi|62290787|ref|YP_222580.1| hypothetical protein BruAb1_1909 [Brucella abortus bv. 1 str.
           9-941]
 gi|82700698|ref|YP_415272.1| elongator protein 3 [Brucella melitensis biovar Abortus 2308]
 gi|148559183|ref|YP_001259755.1| hypothetical protein BOV_1860 [Brucella ovis ATCC 25840]
 gi|161619851|ref|YP_001593738.1| MiaB-like tRNA modifying enzyme [Brucella canis ATCC 23365]
 gi|163843956|ref|YP_001628360.1| MiaB-like tRNA modifying enzyme [Brucella suis ATCC 23445]
 gi|189025001|ref|YP_001935769.1| elongator protein 3 [Brucella abortus S19]
 gi|254690074|ref|ZP_05153328.1| elongator protein 3 [Brucella abortus bv. 6 str. 870]
 gi|254694562|ref|ZP_05156390.1| elongator protein 3 [Brucella abortus bv. 3 str. Tulya]
 gi|254696187|ref|ZP_05158015.1| elongator protein 3 [Brucella abortus bv. 2 str. 86/8/59]
 gi|254700574|ref|ZP_05162402.1| elongator protein 3 [Brucella suis bv. 5 str. 513]
 gi|254704944|ref|ZP_05166772.1| elongator protein 3 [Brucella suis bv. 3 str. 686]
 gi|254707542|ref|ZP_05169370.1| elongator protein 3 [Brucella pinnipedialis M163/99/10]
 gi|254708921|ref|ZP_05170732.1| elongator protein 3 [Brucella pinnipedialis B2/94]
 gi|254731105|ref|ZP_05189683.1| elongator protein 3 [Brucella abortus bv. 4 str. 292]
 gi|256030447|ref|ZP_05444061.1| elongator protein 3 [Brucella pinnipedialis M292/94/1]
 gi|256059907|ref|ZP_05450093.1| elongator protein 3 [Brucella neotomae 5K33]
 gi|256158431|ref|ZP_05456329.1| elongator protein 3 [Brucella ceti M490/95/1]
 gi|256253851|ref|ZP_05459387.1| elongator protein 3 [Brucella ceti B1/94]
 gi|256258327|ref|ZP_05463863.1| elongator protein 3 [Brucella abortus bv. 9 str. C68]
 gi|256370335|ref|YP_003107846.1| hypothetical protein BMI_I1955 [Brucella microti CCM 4915]
 gi|260169357|ref|ZP_05756168.1| hypothetical protein BruF5_13565 [Brucella sp. F5/99]
 gi|260546051|ref|ZP_05821791.1| elongator protein 3 [Brucella abortus NCTC 8038]
 gi|260567580|ref|ZP_05838050.1| elongator protein 3 [Brucella suis bv. 4 str. 40]
 gi|260755612|ref|ZP_05867960.1| conserved hypothetical protein [Brucella abortus bv. 6 str. 870]
 gi|260758837|ref|ZP_05871185.1| conserved hypothetical protein [Brucella abortus bv. 4 str. 292]
 gi|260760561|ref|ZP_05872904.1| conserved hypothetical protein [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260884638|ref|ZP_05896252.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68]
 gi|261214886|ref|ZP_05929167.1| conserved hypothetical protein [Brucella abortus bv. 3 str. Tulya]
 gi|261220989|ref|ZP_05935270.1| conserved hypothetical protein [Brucella ceti B1/94]
 gi|261315023|ref|ZP_05954220.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10]
 gi|261316420|ref|ZP_05955617.1| conserved hypothetical protein [Brucella pinnipedialis B2/94]
 gi|261323879|ref|ZP_05963076.1| conserved hypothetical protein [Brucella neotomae 5K33]
 gi|261751082|ref|ZP_05994791.1| conserved hypothetical protein [Brucella suis bv. 5 str. 513]
 gi|261755644|ref|ZP_05999353.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686]
 gi|261758875|ref|ZP_06002584.1| elongator protein 3 [Brucella sp. F5/99]
 gi|265987491|ref|ZP_06100048.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1]
 gi|265996948|ref|ZP_06109505.1| conserved hypothetical protein [Brucella ceti M490/95/1]
 gi|294851175|ref|ZP_06791848.1| MiaB-like tRNA modifying enzyme [Brucella sp. NVSL 07-0026]
 gi|297247174|ref|ZP_06930892.1| MiaB-like tRNA modifying enzyme [Brucella abortus bv. 5 str. B3196]
 gi|23348804|gb|AAN30825.1| conserved hypothetical protein [Brucella suis 1330]
 gi|62196919|gb|AAX75219.1| conserved hypothetical protein [Brucella abortus bv. 1 str. 9-941]
 gi|82616799|emb|CAJ11889.1| Protein of unknown function UPF0004:MiaB-like tRNA modifying
           enzyme:Elongator protein 3/MiaB/NifB:Radical SAM
           [Brucella melitensis biovar Abortus 2308]
 gi|148370440|gb|ABQ60419.1| conserved hypothetical protein [Brucella ovis ATCC 25840]
 gi|161336662|gb|ABX62967.1| MiaB-like tRNA modifying enzyme [Brucella canis ATCC 23365]
 gi|163674679|gb|ABY38790.1| MiaB-like tRNA modifying enzyme [Brucella suis ATCC 23445]
 gi|189020573|gb|ACD73295.1| elongator protein 3 [Brucella abortus S19]
 gi|256000498|gb|ACU48897.1| hypothetical protein BMI_I1955 [Brucella microti CCM 4915]
 gi|260096158|gb|EEW80034.1| elongator protein 3 [Brucella abortus NCTC 8038]
 gi|260157098|gb|EEW92178.1| elongator protein 3 [Brucella suis bv. 4 str. 40]
 gi|260669155|gb|EEX56095.1| conserved hypothetical protein [Brucella abortus bv. 4 str. 292]
 gi|260670993|gb|EEX57814.1| conserved hypothetical protein [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260675720|gb|EEX62541.1| conserved hypothetical protein [Brucella abortus bv. 6 str. 870]
 gi|260874166|gb|EEX81235.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68]
 gi|260916493|gb|EEX83354.1| conserved hypothetical protein [Brucella abortus bv. 3 str. Tulya]
 gi|260919573|gb|EEX86226.1| conserved hypothetical protein [Brucella ceti B1/94]
 gi|261295643|gb|EEX99139.1| conserved hypothetical protein [Brucella pinnipedialis B2/94]
 gi|261299859|gb|EEY03356.1| conserved hypothetical protein [Brucella neotomae 5K33]
 gi|261304049|gb|EEY07546.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10]
 gi|261738859|gb|EEY26855.1| elongator protein 3 [Brucella sp. F5/99]
 gi|261740835|gb|EEY28761.1| conserved hypothetical protein [Brucella suis bv. 5 str. 513]
 gi|261745397|gb|EEY33323.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686]
 gi|262551416|gb|EEZ07406.1| conserved hypothetical protein [Brucella ceti M490/95/1]
 gi|264659688|gb|EEZ29949.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1]
 gi|294819764|gb|EFG36763.1| MiaB-like tRNA modifying enzyme [Brucella sp. NVSL 07-0026]
 gi|297174343|gb|EFH33690.1| MiaB-like tRNA modifying enzyme [Brucella abortus bv. 5 str. B3196]
          Length = 427

 Score =  174 bits (440), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 128/432 (29%), Positives = 211/432 (48%), Gaps = 34/432 (7%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           ++GC++N Y+S  M+    + G   + ++ D   I+ NTC +  +A  +    + + R  
Sbjct: 7   TFGCRLNTYESEVMKREADAAG---LGTLKDG-AIIFNTCAVTAEAVRQARQAIRKAR-- 60

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ------TYYRLPELLERAR 144
                +E  D  ++V GC AQ E +        V++V+G +      +Y  LP+     +
Sbjct: 61  -----RENPDARIIVTGCAAQTEADNFAAMGE-VDLVLGNEEKLKSNSYRMLPDFGVN-Q 113

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
           F K  V+    V +    +  VD    R R   AF+ +Q GCD  CTFC++PY RG   S
Sbjct: 114 FEKVRVNDIMEVRETASHM--VDAIEGRAR---AFVQVQNGCDHRCTFCIIPYGRGNSRS 168

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
             +  VVD+ ++L+ NG  E+ L G ++ ++ G  L G       +   L+++  L RLR
Sbjct: 169 VPMGAVVDQVKRLVGNGYAEVVLTGVDMTSY-GPDLPGNLRLGKLVKTVLAQVPDLQRLR 227

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
            ++    +  + L++A      LMP+LHL +Q+G D ILK M RRH   +  +     R+
Sbjct: 228 LSSIDSIEADEDLMEAIASEKRLMPHLHLSLQAGDDMILKRMKRRHLRDDSIRFCQTARA 287

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           +RPDI   +D I GFP ET++ F+ ++ +V++ G      F YSPR GTP + M  QV  
Sbjct: 288 LRPDIVFGADIIAGFPTETEEMFQNSLKIVEECGLTHLHVFPYSPREGTPAARM-PQVRR 346

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
            +  ER   L+ +         +A  G    +L+EK G      V R+       ++   
Sbjct: 347 EIVKERAARLRAEGDRAYEKHLNALHGTRQRLLVEKEG------VARTEGFTLAAVDQG- 399

Query: 445 HNIGDIIKVRIT 456
            N G+II+  +T
Sbjct: 400 -NAGEIIERIVT 410


>gi|15920732|ref|NP_376401.1| hypothetical protein ST0515 [Sulfolobus tokodaii str. 7]
 gi|15621515|dbj|BAB65510.1| 418aa long conserved hypothetical protein [Sulfolobus tokodaii str.
           7]
          Length = 418

 Score =  174 bits (440), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 132/447 (29%), Positives = 228/447 (51%), Gaps = 35/447 (7%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + ++++YGC +N  DS  M  +   +G++ V+S + AD+IVLNTC +R +  E++     
Sbjct: 2   KVYIETYGCALNKGDSYIMMTLLKDRGHDIVDSYNQADVIVLNTCAVRLETEERMKQ--- 58

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           RI+ LK    K G  L  ++AGC+  ++   ++  +P  + +VG Q+  ++ E +E  + 
Sbjct: 59  RIKELK----KIGKKL--IIAGCLVSSQPALVMSLAP-ESSIVGAQSIDKIVEAVESNKR 111

Query: 146 GKRVVDTDYSVEDK-FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
           G  + ++   V  + FE             G  + + I +GC   C FC+    R    S
Sbjct: 112 GIFLEESKELVTPRIFE-------------GKISIIPIADGCAGDCNFCITKLARKKLRS 158

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
                +V+  ++ +  G  EI L  Q+  A+   GLD       +LL  + EI+G   +R
Sbjct: 159 YPPRNIVNAVKEAVQKGAVEIELTAQDTAAY---GLDI-NYNLVELLKEILEIEGNYMIR 214

Query: 265 YTTSHPR---DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
                P       D +++   D  V   +LHLPVQSG DR+LK MNR++T  EYR+++  
Sbjct: 215 IGMMTPELAFKQIDEILEIIKDKRVY-KFLHLPVQSGDDRVLKLMNRKYTVDEYRELVKE 273

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           IR   P + I++D I+G PGE D+ F+ T++L+ +I + +     YS R  T  ++M  Q
Sbjct: 274 IRDKIPIVNITTDIIIGHPGEDDEAFQNTINLIKEIKFERIHLAMYSIRPNTRSASM-PQ 332

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           V +++K ER+    +   E   S +   +G    VL  + G+ KG ++GR+     VV+ 
Sbjct: 333 VPDSIKKERMKIANEVYEEVAYSVHSEYLGSNALVLTTELGR-KGSIIGRTINYIPVVIK 391

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
             +  +G+ I V+IT+     L G+ +
Sbjct: 392 DYD-KLGEWINVKITEASFFDLRGKFI 417


>gi|332665065|ref|YP_004447853.1| MiaB-like tRNA modifying enzyme [Haliscomenobacter hydrossis DSM
           1100]
 gi|332333879|gb|AEE50980.1| MiaB-like tRNA modifying enzyme [Haliscomenobacter hydrossis DSM
           1100]
          Length = 446

 Score =  174 bits (440), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 124/417 (29%), Positives = 200/417 (47%), Gaps = 24/417 (5%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
            P+     + GC++N  ++  +  +F   GY  V+    AD+ V+NTC + + A  K   
Sbjct: 3   TPRTVAFYTLGCKLNYSETSSIARLFEGAGYTEVDFEQGADVYVINTCSVTDFADRKC-- 60

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE- 141
                R +    ++      VVV GC AQ + EEI    P V++V+G    +R+ + ++ 
Sbjct: 61  -----RKVVRQALRHSPQAFVVVVGCYAQLKPEEIAE-IPGVDLVLGAAEKFRILDFIDT 114

Query: 142 -RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
                GK +V      E +    + VD  ++      +FL +Q+GC+  C+FC +P  RG
Sbjct: 115 LSKAPGKGMVHAGEVREAR----NFVDA-FSFGDRTRSFLKVQDGCNYKCSFCTIPQARG 169

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-------GEKCTFSDLLYS 253
              S  +  VV  A K+ + GV EI L G N+  + G G +        ++  F DL+  
Sbjct: 170 ASRSDKVENVVANAWKIAEMGVKEIVLTGVNIGDF-GNGTEVIEGTSPKKEAMFIDLIRE 228

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
           L +++ + R R ++  P   +D +I          P+LH+P+QSG++  L+ M RR+T  
Sbjct: 229 LDQVEAISRFRISSIEPNLCTDEIIDFVAGSQRFAPHLHMPLQSGNNTQLRQMRRRYTRE 288

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
            Y   + RI+   P   I  D IVGFPGET +DF  T   +  +  +    F YS R  T
Sbjct: 289 LYTDRVARIKQQMPHACIGVDVIVGFPGETQEDFLETYHFLHDLDISYLHVFTYSERANT 348

Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG 430
           P ++M   V  NV+ ER   L     +++  F +  +GQ   VL E H K+K  + G
Sbjct: 349 PAADMDGVVPVNVRRERNEMLGILSEKKRRHFYEQHLGQTRLVLFEAH-KDKNLMAG 404


>gi|312130731|ref|YP_003998071.1| ssu ribosomal protein s12p methylthiotransferase [Leadbetterella
           byssophila DSM 17132]
 gi|311907277|gb|ADQ17718.1| SSU ribosomal protein S12P methylthiotransferase [Leadbetterella
           byssophila DSM 17132]
          Length = 436

 Score =  174 bits (440), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 139/457 (30%), Positives = 222/457 (48%), Gaps = 53/457 (11%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMD--------DADLIVLNTCHIREKAAEKVYS 82
           + GC  N+ DS    +M ++Q   R N MD        D+ ++V+NTC   + A ++   
Sbjct: 15  TLGCSKNLVDS----EMLYTQL--RGNGMDVSHESPEDDSQIVVINTCGFIDNAKQESID 68

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            + R  + K S I E     V V GC++    +E+    P V+   G      LP LL  
Sbjct: 69  TILRYVDAKESGIVEK----VYVTGCLSHRYKDELEVEIPQVDSWFGTN---ELPRLL-- 119

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
                + +  DY  E   ERL      Y       A++ I EGCD+ C+FC +P  RG  
Sbjct: 120 -----KTLKADYKHELIGERLLTTPSHY-------AYMKIAEGCDRPCSFCAIPLMRGSH 167

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLV 261
           +SR + ++V  A+ ++  G  E+ L+ Q++  +   GLD  +K   S+LL  LS+++GL 
Sbjct: 168 VSRPMDELVLSAKNMVAKGTKELILIAQDLTYY---GLDLYKKRNLSELLARLSDVEGLD 224

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
            +R   ++P      +++   +   +  YL +P+Q GS  +LK M R     +  ++++ 
Sbjct: 225 WIRLQYAYPAGFPMDILEVMAERTNICKYLDMPLQHGSSEMLKKMRRGIDRPKTEKLLET 284

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           IR   P I + +  IVG PGET+D F      V+   + +   F+YS    T   + ++ 
Sbjct: 285 IREKVPGIHLRTTLIVGHPGETEDMFEEMYRFVESQKFDRLGVFQYSHEEQTHSYSFVDD 344

Query: 382 VDENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPW 434
           V   VK ER   ++ LQ+ + E++   N A VGQ+ +VL++K  KE G  VGR    SP 
Sbjct: 345 VPAEVKQERADIIMELQQGISEER---NKAKVGQVFKVLVDK--KESGHFVGRTEFDSPE 399

Query: 435 LQSVVLNSKNH--NIGDIIKVRITDVKISTLYGELVV 469
           + + VL    H   IGD  +VRI       LYG  +V
Sbjct: 400 VDNEVLIPAEHYVRIGDFTQVRIDSATEFDLYGTPIV 436


>gi|225851472|ref|YP_002731706.1| hypothetical protein PERMA_1953 [Persephonella marina EX-H1]
 gi|225645752|gb|ACO03938.1| conserved hypothetical protein [Persephonella marina EX-H1]
          Length = 439

 Score =  174 bits (440), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 126/432 (29%), Positives = 215/432 (49%), Gaps = 24/432 (5%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC+MN +++  +E+ F  +GY   +  D AD+ V+NTC +   A     +    IR  
Sbjct: 10  TLGCRMNQFETSAIEEKFEREGYTLTDFRDKADIYVINTCTVTNDADR---TSRKTIRQA 66

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE----RARFG 146
           K    +   D +VVV GC AQ   +++ +   I ++V+G      + E++E      R  
Sbjct: 67  K----RRNPDAVVVVTGCYAQVSPDKLAQMEEI-DLVIGNSHKDAVFEIVENFINERRQD 121

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           K  +D  +  +++F+   I         G    L +QEGC+ FC+FC++P+ RG   S  
Sbjct: 122 KVFIDNIFR-QNEFKTFQI----STFYEGSRPILKVQEGCNSFCSFCIIPFARGKVRSAK 176

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
             +VV +   L++ G  EI L G  ++ +   G D  +  +S LL  + +IK L R+R +
Sbjct: 177 TEEVVKQISILVERGFKEIVLTGTQLSQF---GYDNGEDLYS-LLKDIVKIKDLYRVRLS 232

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
           +    ++ D LI      + + P+ HL +QS  D++LK M R +T  EY + ++ I   R
Sbjct: 233 SMGINELDDKLIDLITSEEKIAPHFHLSIQSADDKVLKDMKRDYTVKEYIEKVESIIKRR 292

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           P+ AI +D I GFP E +  F  ++  ++ I +A    F YS R GT  S + + V    
Sbjct: 293 PETAIGTDIITGFPTEDEKSFENSLKNIEDIPFAYIHVFTYSERKGTTASKIGDLVPPQE 352

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHN 446
           K  R   L++   ++ + F    +   +EVLI    ++ GK VG +     +  +S+  +
Sbjct: 353 KKRRTAILREISEKKSIEFRKRFLNNDLEVLI--ISEKDGKKVGITGNYIHIKFDSE-KD 409

Query: 447 IGDIIKVRITDV 458
           I  I  VR+T+V
Sbjct: 410 INQITSVRLTEV 421


>gi|225628132|ref|ZP_03786167.1| MiaB-like tRNA modifying enzyme [Brucella ceti str. Cudo]
 gi|237816294|ref|ZP_04595287.1| MiaB-like tRNA modifying enzyme [Brucella abortus str. 2308 A]
 gi|225616957|gb|EEH14004.1| MiaB-like tRNA modifying enzyme [Brucella ceti str. Cudo]
 gi|237788361|gb|EEP62576.1| MiaB-like tRNA modifying enzyme [Brucella abortus str. 2308 A]
          Length = 447

 Score =  174 bits (440), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 128/432 (29%), Positives = 211/432 (48%), Gaps = 34/432 (7%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           ++GC++N Y+S  M+    + G   + ++ D   I+ NTC +  +A  +    + + R  
Sbjct: 27  TFGCRLNTYESEVMKREADAAG---LGTLKDG-AIIFNTCAVTAEAVRQARQAIRKAR-- 80

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ------TYYRLPELLERAR 144
                +E  D  ++V GC AQ E +        V++V+G +      +Y  LP+     +
Sbjct: 81  -----RENPDARIIVTGCAAQTEADNFAAMGE-VDLVLGNEEKLKSNSYRMLPDFGVN-Q 133

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
           F K  V+    V +    +  VD    R R   AF+ +Q GCD  CTFC++PY RG   S
Sbjct: 134 FEKVRVNDIMEVRETASHM--VDAIEGRAR---AFVQVQNGCDHRCTFCIIPYGRGNSRS 188

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
             +  VVD+ ++L+ NG  E+ L G ++ ++ G  L G       +   L+++  L RLR
Sbjct: 189 VPMGAVVDQVKRLVGNGYAEVVLTGVDMTSY-GPDLPGNLRLGKLVKTVLAQVPDLQRLR 247

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
            ++    +  + L++A      LMP+LHL +Q+G D ILK M RRH   +  +     R+
Sbjct: 248 LSSIDSIEADEDLMEAIASEKRLMPHLHLSLQAGDDMILKRMKRRHLRDDSIRFCQTARA 307

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           +RPDI   +D I GFP ET++ F+ ++ +V++ G      F YSPR GTP + M  QV  
Sbjct: 308 LRPDIVFGADIIAGFPTETEEMFQNSLKIVEECGLTHLHVFPYSPREGTPAARM-PQVRR 366

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
            +  ER   L+ +         +A  G    +L+EK G      V R+       ++   
Sbjct: 367 EIVKERAARLRAEGDRAYEKHLNALHGTRQRLLVEKEG------VARTEGFTLAAVDQG- 419

Query: 445 HNIGDIIKVRIT 456
            N G+II+  +T
Sbjct: 420 -NAGEIIERIVT 430


>gi|190570899|ref|YP_001975257.1| MiaB-like tRNA modifying enzyme [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|213019415|ref|ZP_03335221.1| MiaB-like tRNA modifying enzyme [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
 gi|190357171|emb|CAQ54586.1| MiaB-like tRNA modifying enzyme [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|212994837|gb|EEB55479.1| MiaB-like tRNA modifying enzyme [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
          Length = 408

 Score =  174 bits (440), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 127/440 (28%), Positives = 223/440 (50%), Gaps = 36/440 (8%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V ++GC++N Y+S  +++       E V        +V+++C +  +A  +V   + +I 
Sbjct: 4   VITFGCRLNFYESELIKEALKKAKRENV--------VVVHSCAVTNEAERQVKQKIRKI- 54

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
             KN   KE     ++V GC  Q + +      P V+ V+G Q   R    L        
Sbjct: 55  -YKNDPSKE-----IIVVGCAVQLDPKS-YSDIPGVSKVLGNQDKLRAENYLLN---NDE 104

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           ++ +D  VE       +++G  ++ R   AF+ IQ GC+  CTFC +   RG   S  ++
Sbjct: 105 ILVSDNQVEP-----ILINGFEDKSR---AFIEIQNGCNHSCTFCSITEARGNNRSVPVN 156

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
            ++++ +  I+NG  E+   G ++  + G  L G++   S +   L +I  L RLR ++ 
Sbjct: 157 NIIEQIKIFIENGYQEVVFTGVDITDF-GTDLFGKQSLGSMVRRVLKDIPQLKRLRLSSI 215

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
              ++ D L+    +   LMP+LHL +QSG++ ILK M RRH   +  +   +++S+RP+
Sbjct: 216 DVAEVDDELMDLIANESRLMPHLHLSLQSGNNLILKRMKRRHNREQVIEFCHKMKSLRPN 275

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           IA  +D I GFP ETD+ F+ T+DL+ KI      +F YS R  TP + M  Q+ ENV+ 
Sbjct: 276 IAFGADIIAGFPTETDEMFQDTVDLLKKINVVYLHAFPYSERKNTPAARM-PQISENVRK 334

Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIG 448
           ER+  L++  +E   SF  + +G    VL+E++       +GR+     + L S+     
Sbjct: 335 ERVKHLREINKEMMSSFYQSLLGTEQSVLVEQNN------IGRTENFALIKLTSRVQ-AK 387

Query: 449 DIIKVRITDVKISTLYGELV 468
            I+K  +  ++ + L G ++
Sbjct: 388 SIVKAHVKGIENNCLIGNII 407


>gi|288940768|ref|YP_003443008.1| MiaB-like tRNA modifying enzyme YliG [Allochromatium vinosum DSM
           180]
 gi|288896140|gb|ADC61976.1| MiaB-like tRNA modifying enzyme YliG [Allochromatium vinosum DSM
           180]
          Length = 454

 Score =  173 bits (439), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 142/470 (30%), Positives = 231/470 (49%), Gaps = 58/470 (12%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + P+  FV S GC     DS R+     ++GY+   +  +ADL+++NTC   + A ++  
Sbjct: 16  LAPRIGFV-SLGCPKATVDSERILTRLRAEGYQLQPTHAEADLVIVNTCGFIDSAVDESL 74

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             +    + +N R        V+V GC+  A  E +  R P V  V GP     L E++ 
Sbjct: 75  DAIAEALD-ENGR--------VIVTGCLG-ARAELVRERHPEVLAVTGPHA---LEEVM- 120

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
                  V     +  D F  L I   G        A+L I EGC+  C FC++P  RG 
Sbjct: 121 -----AAVHAHLPAPHDPFTSL-IPPQGVRLTPSHYAYLKISEGCNHRCRFCIIPSLRGD 174

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDL 250
            +SR + +++DEA +L+++GV E+ ++ Q+ +A           W G+ L   +   ++L
Sbjct: 175 LVSRPIGEILDEAGRLVESGVRELLVVSQDTSAYGLDLGHRPDFWGGRPL---RTHITEL 231

Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
             +L E+   +RL Y   +P    D LI    D  V++PYL +P+Q GS+ +L++M RR 
Sbjct: 232 ARTLGELPAWIRLHYVYPYPH--VDELIPLMAD-GVILPYLDMPLQHGSESVLRAM-RRP 287

Query: 311 TAYEYRQIIDRIRSVR---PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
            A E  +++DR+   R   PD+ + S FIVGFPGET+DDF   +D + +    +   F Y
Sbjct: 288 AATE--KVLDRLARWRADCPDLVLRSTFIVGFPGETEDDFERLLDFLREARLDRVGCFPY 345

Query: 368 SPRLGTPGSNMLEQVDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE 424
           S   G   + +   V E VK ERL   + +Q  +  ++++   A VGQ + VL++    E
Sbjct: 346 SAVEGAAANELPNPVPEAVKQERLERFMDVQAGISREKLA---ARVGQRLTVLVD--AVE 400

Query: 425 KGKLVGRS----PWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468
           +  ++ RS    P +   V+      I  GD I+V IT+     L+ + V
Sbjct: 401 EDAIIARSYGDAPEIDGEVIIEGAWEIDPGDFIEVVITEAGEHDLWAQPV 450


>gi|171472305|gb|ACB46858.1| MiaB [Pseudomonas stutzeri]
          Length = 441

 Score =  173 bits (439), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 141/469 (30%), Positives = 227/469 (48%), Gaps = 57/469 (12%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  F+ S GC     DS R+      +GY+ V S +DAD++V+NTC   + A  +    
Sbjct: 6   PKVGFI-SLGCPKATVDSERILTQLRMEGYQIVPSYEDADVVVVNTCGFIDSAKAESLDA 64

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G         I E G   V+V GC+   E   I    P V  V GPQ Y ++   +   
Sbjct: 65  IGE-------AIAENGK--VIVTGCMGVDENN-IRGVHPSVLAVTGPQQYEQVVNAVHE- 113

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
                VV  +    D F  L    G     R   A+L I EGC+  C+FC++P  RG  +
Sbjct: 114 -----VVPPNIE-HDPFVDLVPPQGIKLTPRHY-AYLKISEGCNHTCSFCIIPSMRGKLV 166

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLY 252
           SR +  V+ EA +L+  GV E+ ++ Q+ +A           W G+ +   K    +L  
Sbjct: 167 SRPVGDVLSEAERLVKAGVKEVLVISQDTSAYGVDLKYKLDFWNGQPV---KTRMLELCE 223

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
            L ++   VRL Y   +P       + A G    ++PYL +P Q  S ++LK+M R   A
Sbjct: 224 ELGKMGVWVRLHYVYPYPNVDDVIPLMAAGK---ILPYLDIPFQHASPKVLKAMKR--PA 278

Query: 313 YEYRQI--IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370
           +E + +  I + R + P++ I S FIVGFPGET++DF+  +D + +    +   F+YSP 
Sbjct: 279 FEDKTLARIKKWREICPELTIRSTFIVGFPGETEEDFQYLLDWLTEAQLDRVGCFQYSPV 338

Query: 371 LGTPGSNM-LEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG 426
            G P   M LE V + +K E   R +  Q+ +  +++      VGQ ++VLI+K  ++  
Sbjct: 339 DGAPAEAMDLEPVPDEIKQERWDRFMAHQQAISAERLQRK---VGQELDVLIDKVDEDGA 395

Query: 427 KLVGRSPWLQS-------VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
             +GRS W  +        V +++    GD ++VR+T+     L+ E++
Sbjct: 396 --IGRS-WADAPEIDGMVYVDSAQPLQPGDKVRVRVTNADEYDLWAEVI 441


>gi|15966991|ref|NP_387344.1| hypothetical protein SMc03855 [Sinorhizobium meliloti 1021]
 gi|307302459|ref|ZP_07582216.1| MiaB-like tRNA modifying enzyme [Sinorhizobium meliloti BL225C]
 gi|307316211|ref|ZP_07595655.1| MiaB-like tRNA modifying enzyme [Sinorhizobium meliloti AK83]
 gi|15076264|emb|CAC47817.1| Conserved hypothetical protein [Sinorhizobium meliloti 1021]
 gi|306898051|gb|EFN28793.1| MiaB-like tRNA modifying enzyme [Sinorhizobium meliloti AK83]
 gi|306903129|gb|EFN33719.1| MiaB-like tRNA modifying enzyme [Sinorhizobium meliloti BL225C]
          Length = 424

 Score =  173 bits (439), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 120/400 (30%), Positives = 186/400 (46%), Gaps = 30/400 (7%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V ++GC++N Y+S  M       G          + +++NTC +  +A  +         
Sbjct: 6   VITFGCRLNTYESEVMRAEAEKAGLN--------NAVLVNTCAVTAEAVRQARQA----- 52

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ------TYYRLPELLER 142
                  +E     ++V GC AQ E E     +  V+ V+G +      +Y  LP+    
Sbjct: 53  --IRRARRENPHARIIVTGCAAQTEKETFAEMAE-VDAVLGNEEKLASVSYRSLPDFGVS 109

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           A    RV D         + +  +DG       V AF+ +Q GCD  CTFC++PY RG  
Sbjct: 110 AEEKLRVNDIMSVRATAPQMVKHIDGH------VRAFIQVQNGCDHRCTFCIIPYGRGNS 163

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            S  +  VVD+AR+L ++G  EI L G +  ++ G  L G           L ++  ++R
Sbjct: 164 RSVPMGAVVDQARRLAESGYREIVLTGVDATSY-GADLPGTPTLGLLAKTLLKQVPEILR 222

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LR ++    +    L+    +    MP+LHL +Q G D ILK M RRH++ + R   D +
Sbjct: 223 LRLSSIDSIEADGHLLDLIAEEPRFMPHLHLSLQHGDDLILKRMKRRHSSADARAFCDEV 282

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R +RP I++ +D I GFP ET+  F   M L +  G A    F YSPR GTP + M  Q+
Sbjct: 283 RRLRPGISLGADMIAGFPTETEPMFENAMRLAEDCGIAHLHVFPYSPRPGTPAARM-PQL 341

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422
           D  +  ER   L+ K  E      +  +G    +L+E +G
Sbjct: 342 DRALVKERAARLRAKGAELHAGHLEGMIGSSQTILVEMNG 381


>gi|312879755|ref|ZP_07739555.1| MiaB-like tRNA modifying enzyme [Aminomonas paucivorans DSM 12260]
 gi|310783046|gb|EFQ23444.1| MiaB-like tRNA modifying enzyme [Aminomonas paucivorans DSM 12260]
          Length = 454

 Score =  173 bits (439), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 122/402 (30%), Positives = 204/402 (50%), Gaps = 28/402 (6%)

Query: 33  GCQMNVYDSLRMEDMFFSQGYERVN-SMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLK 91
           GC+ N Y+   +      +G   V+ S +D D +VL TC +   A  KV       R   
Sbjct: 18  GCRTNQYEGDALASELAERGAILVDPSSEDLDGVVLLTCTVTAVADRKV-------RQEL 70

Query: 92  NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV- 150
               +     ++V AGC AQ       RR    + +VG +    +P+LL R R G+ V  
Sbjct: 71  RRLRRRHPRAILVAAGCWAQEADPREARRLG-ADHLVGNRLKAAIPDLLSRLRAGEEVPF 129

Query: 151 --DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
               D  V + ++ L +        R   AF+ +Q+GC   C +C+VP  RG  +SR   
Sbjct: 130 LNRRDVGVCEDWDDLRL----SRTCRHTRAFVKVQDGCSHGCRYCIVPRVRGRSVSRPPE 185

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAW-RGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
            V++E R L+ +G  E+ L G ++  + R +G D       +L+  L+ ++GLVRLR+ +
Sbjct: 186 DVLEEVRGLVGSGCREVVLTGVHLGLYGRDRGTD-----LGELVKRLARVEGLVRLRFGS 240

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI-RSVR 326
             P  + + L+   G+ ++  P+LHLP+QSG D +L  M R +TA  + ++++   R + 
Sbjct: 241 LEPFGLGESLLDVLGETEIFCPHLHLPLQSGDDGVLDRMGRGYTAAAFARLVEAARRRLG 300

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
            D+ +S+D +VGFPGE +  FR T+DLV+ +   +   F YSPR GTP +         +
Sbjct: 301 EDLHVSTDLLVGFPGEEEVPFRNTLDLVETLELGRLHVFPYSPRAGTPAAAWPRPDPAAL 360

Query: 387 --KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG 426
             + +R L L + L ++   F    +G+ +EVL+E+  + +G
Sbjct: 361 RERVQRALGLGRTLLDR---FASRFLGREVEVLVERASEGEG 399


>gi|93006539|ref|YP_580976.1| hypothetical protein Pcryo_1715 [Psychrobacter cryohalolentis K5]
 gi|122989854|sp|Q1QA11|RIMO_PSYCK RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|92394217|gb|ABE75492.1| conserved hypothetical protein [Psychrobacter cryohalolentis K5]
          Length = 531

 Score =  173 bits (439), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 130/424 (30%), Positives = 209/424 (49%), Gaps = 37/424 (8%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
            P+  FV S GC   + DS R+       GY+  +  + ADL+V+NTC   E A ++   
Sbjct: 87  APKIGFV-SLGCPKALVDSERIITELSRDGYQVASDYEGADLVVVNTCGFIESAVQESLD 145

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +G   + KN +        V+V GC+ + E ++I    P V  V G   Y  +   +  
Sbjct: 146 AIGEAIS-KNGK--------VIVTGCLGK-EADKIREMHPAVLAVTGAHAYDDVIRAVA- 194

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
               K     D S + K + ++  + G        A+L I EGC+  CTFC++P  RG  
Sbjct: 195 LHVPKPDCGLDASYDPKIDLIN--EAGIKLTPSHYAYLKISEGCNHRCTFCIIPSLRGDL 252

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLL 251
           +SR +  V++EA  L   GV E+ ++ Q+ +A           W G  L   K  F DL 
Sbjct: 253 VSRPIDSVMNEALALKKAGVKELLIISQDTSAYGLDLKYKTSFWNGMPL---KSKFYDLC 309

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
            +L+++   VRL Y   +P    D +++  G+   L+PYL +P Q  S RILK+M R   
Sbjct: 310 QALNDLGIWVRLHYVYPYPH--VDKVVELMGEKK-LLPYLDIPFQHASHRILKAMKRPAH 366

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
           +      I   R + PDI I S F+VGFPGET++DF+  +D + +    +  +F YS   
Sbjct: 367 SENTLARIHAWREICPDIVIRSTFVVGFPGETEEDFQCLLDWLVEARLDRVGAFTYSEVE 426

Query: 372 GTPGSNMLEQVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL 428
           G   +++   V E+VK    ERL+ LQ+ +  Q++      +G+ + VL+++  +E+G  
Sbjct: 427 GAVANDLPNHVPEDVKQERYERLMTLQQDISAQKLQEK---IGKTLMVLVDEIDREEGVA 483

Query: 429 VGRS 432
           + RS
Sbjct: 484 ICRS 487


>gi|312959323|ref|ZP_07773840.1| hypothetical protein PFWH6_1221 [Pseudomonas fluorescens WH6]
 gi|311286040|gb|EFQ64604.1| hypothetical protein PFWH6_1221 [Pseudomonas fluorescens WH6]
          Length = 446

 Score =  173 bits (439), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 140/469 (29%), Positives = 228/469 (48%), Gaps = 61/469 (13%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  FV S GC   + DS R+      +GY+ V++  DAD++V+NTC   + A  +    
Sbjct: 10  PKVGFV-SLGCPKALVDSERILTQLRMEGYDVVSTYQDADVVVVNTCGFIDSAKAESLEV 68

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G         IKE G   V+V GC+   EG  I    P V  V GPQ Y          
Sbjct: 69  IGE-------AIKENGK--VIVTGCMGVEEGN-IRNVHPSVLAVTGPQQY---------- 108

Query: 144 RFGKRVVDTDYSV----EDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
              ++VV+  + V    +D    + +V   G        A+L I EGC+  C+FC++P  
Sbjct: 109 ---EQVVNAVHDVVPPRQDHNPLIDLVPPQGIKLTPRHYAYLKISEGCNHSCSFCIIPSM 165

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTF 247
           RG  +SR +  V+DEA++L+ +GV E+ ++ Q+ +A           W G  +   K   
Sbjct: 166 RGKLVSRPVGDVLDEAQRLVKSGVKELLVISQDTSAYGVDVKYRTGFWNGAPV---KTRM 222

Query: 248 SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307
           ++L  +LS +   VRL Y   +P       + A G    ++PYL +P Q  S ++LK+M 
Sbjct: 223 TELCEALSSLGVWVRLHYVYPYPHVDELIPLMAAGK---ILPYLDIPFQHASPKVLKAMK 279

Query: 308 RRHTAYEYRQI--IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           R   A+E + +  I   R + PD+ I S FIVGFPGET++DF+  +D + +    +   F
Sbjct: 280 R--PAFEDKTLARIKNWREICPDLIIRSTFIVGFPGETEEDFQYLLDWLTEAQLDRVGCF 337

Query: 366 KYSPRLGTPGSNM-LEQVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKH 421
           +YSP  G P + + L  V ++VK    ER +  Q+ +   ++      +G+ IEVLI++ 
Sbjct: 338 QYSPVEGAPANLLDLPVVPDDVKQDRWERFMAHQQAISSARLQLR---IGKEIEVLIDEV 394

Query: 422 GKEK--GKLVGRSPWLQSVVL--NSKNHNIGDIIKVRITDVKISTLYGE 466
            ++   G+    +P +   V   ++     GD +   +TD     L+ E
Sbjct: 395 DEQGAVGRCFFDAPEIDGNVFIDDASGLKPGDKVWCTVTDADEYDLWAE 443


>gi|288920752|ref|ZP_06415052.1| RNA modification enzyme, MiaB family [Frankia sp. EUN1f]
 gi|288347828|gb|EFC82105.1| RNA modification enzyme, MiaB family [Frankia sp. EUN1f]
          Length = 337

 Score =  173 bits (439), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 100/235 (42%), Positives = 143/235 (60%), Gaps = 6/235 (2%)

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E  R    V+ E   L+  G  EITLLGQNVN++ G+ L G+   F+ LL +   I+GL 
Sbjct: 1   ERDRRPGDVLAEVEALVAEGALEITLLGQNVNSY-GRSL-GDPGAFARLLRACGNIEGLE 58

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+T+ HPRD +D +I+A      + P LH+P+QSGSD +L+ M R +    +  I++R
Sbjct: 59  RVRFTSPHPRDFTDDVIEAMAQTPNVCPQLHMPLQSGSDAVLRRMRRSYRRERFLGIVER 118

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R   P  AI++D IVGFPGET++DF  T+D+V    +A AF+FKYSPR GTP + M   
Sbjct: 119 VREAIPHAAITTDIIVGFPGETEEDFADTLDVVRAARFAGAFTFKYSPRPGTPAAEMDGA 178

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGK---EKGKLVGRS 432
           VD  V +ER   L     E   + N A VG+ +E+L+ E  G+   E G+L GR+
Sbjct: 179 VDPAVVSERYERLASLQDEMSWAENRAQVGRRVEILVSEGEGRKDSETGRLSGRA 233


>gi|255034257|ref|YP_003084878.1| MiaB-like tRNA modifying enzyme [Dyadobacter fermentans DSM 18053]
 gi|254947013|gb|ACT91713.1| MiaB-like tRNA modifying enzyme [Dyadobacter fermentans DSM 18053]
          Length = 442

 Score =  173 bits (439), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 118/403 (29%), Positives = 202/403 (50%), Gaps = 17/403 (4%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N  +S  +  MF  +GY +V   ++ D+ ++NTC + E A +K        R +
Sbjct: 8   TLGCKLNYSESSSIGRMFEDKGYTKVEFNENPDIFIINTCSVTENADKKC-------RKI 60

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL---ERARFGK 147
                K   D  V + GC AQ + +EI    P V+ V+G    +RL EL+   E+A  G+
Sbjct: 61  VREAQKINADGYVAIIGCYAQLKPKEI-SEIPGVDAVLGAAEKFRLVELIDTFEKAPSGQ 119

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
                  +++   E  +     Y+       FL +Q+GCD  C +C +P  RG   S S+
Sbjct: 120 PAQVIASTIDHAVEYHT----SYSLNDRTRTFLKVQDGCDYPCAYCTIPLARGKSRSDSI 175

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
             +V  AR +    V EI L G N+  +  +    E+ TF DL+ +L E++G+ R R ++
Sbjct: 176 ENIVKAARDIAARDVKEIVLTGVNIGDFGLRNGVREE-TFLDLVKALDEVEGIERFRISS 234

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
             P  ++D +I+         P+ H+P+QSGS+++L  M RR+    Y + + +I+S+ P
Sbjct: 235 IEPNLLTDEIIEFVAQSKRFAPHFHIPLQSGSNKVLGLMKRRYKRELYTERVAKIKSLMP 294

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
           D  I  D IVG PGET + F  T   ++++  +    F YS R  T    +   V++  +
Sbjct: 295 DCCIGVDVIVGHPGETKELFEETYHFLNELEVSYLHVFTYSERENTAALAIRPIVNKGER 354

Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG 430
           AER   L     +++  F +  +G+  +VL E    + G+++G
Sbjct: 355 AERSKMLHILSDKKKRFFYETQIGKEGKVLFEDE-VQNGQMLG 396


>gi|94497461|ref|ZP_01304031.1| hypothetical protein SKA58_07900 [Sphingomonas sp. SKA58]
 gi|94423092|gb|EAT08123.1| hypothetical protein SKA58_07900 [Sphingomonas sp. SKA58]
          Length = 459

 Score =  173 bits (439), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 139/463 (30%), Positives = 217/463 (46%), Gaps = 54/463 (11%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ DS R+     S GY+       AD++++NTC   + A E+    +G     
Sbjct: 20  SLGCPKNLVDSERILTKLRSDGYQMSADYAGADVVLVNTCGFLDSAKEESLEAIGEA--- 76

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               I E G   V+V GC+   E E I  + P V  V G   Y ++            V 
Sbjct: 77  ----IAENG--RVIVTGCMGD-EAEVIRAKFPQVLAVTGAHQYEQV---------VNAVH 120

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
           D    + + F  L + +GG        ++L I EGC+  C+FC++P  RG  +SR +  V
Sbjct: 121 DASPPIPNAFVDL-VPEGGLKLTPRHYSYLKISEGCNHRCSFCIIPSIRGDLVSRRIDAV 179

Query: 211 VDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYSLSEIKG 259
           + EA KL+  G  E+ ++ Q+ +A           W+G+ +       +  L  L   +G
Sbjct: 180 LREAEKLVAAGTKELLVISQDTSAYGVDTRHDVRQWKGRDVRAHMTDLARELGQLRTAEG 239

Query: 260 ---LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
               VRL Y   +P    D +I    D  +L PYL +P Q  +  +LK+M R   A E +
Sbjct: 240 RAPWVRLHYVYPYPH--VDQVIPLMAD-GLLTPYLDIPFQHAAPNVLKAMKR--PANEAK 294

Query: 317 QIIDRIRSVR---PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
            ++DRIR  R   PDIAI S F+VGFPGET+ DF+  +D +D+    +  +F++ P  G 
Sbjct: 295 -VLDRIRKWRAICPDIAIRSSFVVGFPGETEADFQYLLDWLDEAQLDRVGAFRFEPVEGA 353

Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK--EKGKL--V 429
             + + + V E VK ER   + ++      +   A VG+I+ V+I++ G+  E G +   
Sbjct: 354 AANALPDAVTEEVKEERYQRIMERTAAISAAKLQAKVGRILPVIIDEVGEPDEDGSIGAT 413

Query: 430 GRS----PWLQSVVL---NSKNHNIGDIIKVRITDVKISTLYG 465
            RS    P +   V      + H  GDI+ + + D     LYG
Sbjct: 414 ARSQADAPEIDGNVFLRDVGEGHRAGDIVDIVVEDADDHDLYG 456


>gi|226226580|ref|YP_002760686.1| hypothetical protein GAU_1174 [Gemmatimonas aurantiaca T-27]
 gi|226089771|dbj|BAH38216.1| hypothetical protein [Gemmatimonas aurantiaca T-27]
          Length = 473

 Score =  173 bits (439), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 125/412 (30%), Positives = 200/412 (48%), Gaps = 23/412 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA-AEKVYSFL 84
           +F + + GC  N  DS R      + G E V  + DAD++V+NTC   + A AE + + +
Sbjct: 3   KFGLVTLGCDKNTVDSERYLADLVAHGAEAVQDLRDADVVVVNTCGFIDAAKAESIEAIV 62

Query: 85  GRIRNLKNSRIKEGGDLLVVVA-GCVAQAEGEEILRRSPIVNVVVGPQTYYRL-PELLER 142
                   +R+K+ G    V A GC+ +   +E+L   P V+V +G     RL PEL+ER
Sbjct: 63  ------DAARLKDEGRCKAVFAIGCMVERHKDELLEALPEVDVFLGNSETDRLVPELVER 116

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
              G  +V      E    RL   D  + R      +L I EGCD  C FC +P  RG  
Sbjct: 117 GLIGGSLV------EHPGVRLFSGDAAHVR------YLKISEGCDHGCAFCAIPLMRGKH 164

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            S +L ++V EA+ L   G  EI L+ Q++  +     DG      +LL +L     +  
Sbjct: 165 RSFALDELVREAQLLEVQGAREINLVAQDLAHYGRDRRDGHG--LPELLEALVRETSIPW 222

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R    +   ++  L++       ++ YL  P+Q GSD +L  M R       R+ + R 
Sbjct: 223 IRNMYLYSTGITPRLLEVIAAHPRIVRYLDTPMQHGSDAVLTRMRRPERQKTIRERLARY 282

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R + PD+A+ +  IVGFPGET+DDF    D ++++ + +   F YSP+ GT    M + V
Sbjct: 283 RDIVPDLAVRTSVIVGFPGETEDDFNILCDFLEEMQFDRVGVFTYSPQEGTRAHAMEDDV 342

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPW 434
            +++K ER   +++  R       +  +G+   VL+E+ G      + R+PW
Sbjct: 343 ADSIKQERKERIEELQRAITAERYERFLGREARVLVERRGDYPDVWMARAPW 394


>gi|237740317|ref|ZP_04570798.1| Fe-S oxidoreductase [Fusobacterium sp. 2_1_31]
 gi|229422334|gb|EEO37381.1| Fe-S oxidoreductase [Fusobacterium sp. 2_1_31]
          Length = 439

 Score =  173 bits (439), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 125/447 (27%), Positives = 226/447 (50%), Gaps = 40/447 (8%)

Query: 33  GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92
           GC++N Y++  +++    +GYE V   D +D+ ++N+C +   A  K  + L R + +  
Sbjct: 13  GCKVNQYETESIKNQLIKRGYEEVPFEDKSDIYIINSCTVTSIADRKTRNMLRRAKKI-- 70

Query: 93  SRIKEGGDLLVVVAGCVAQAEGEEILR------------RSPIVNVVVGPQTYYRLPELL 140
                  +  V+V GC AQ    EIL             +S IVN V   +         
Sbjct: 71  -----NPEAKVIVTGCYAQTNSREILEIEDVDFVIDNKNKSNIVNFVGAIEDIS-----F 120

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           ER + G    + +Y  E +F  L         +    A++ IQ+GC+ FC++C +P+ RG
Sbjct: 121 EREKNGNIFQEKEYQ-EYEFATL---------REMTRAYVKIQDGCNHFCSYCKIPFARG 170

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
              SR    ++ E  KL+++G  E+ L+G +++A+ G+  + EK +F  LL  + +IK L
Sbjct: 171 KSRSRKKENILKEIEKLVEDGFKEVILIGIDLSAY-GEDFE-EKDSFESLLEDILKIKDL 228

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R  + +P  ++D  I    + + LMP+LH+ +QS  D +LK+M R + +   R+ + 
Sbjct: 229 KRVRIGSVYPDKITDKFIDLFKNKN-LMPHLHISLQSCDDTVLKNMRRNYGSALIRESLL 287

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           +++S   ++  ++D IVGFP E D  F+ T +++ +I ++    F+YS R GT  SNM  
Sbjct: 288 KLKSKVKNMEFTADVIVGFPKEDDSMFQNTRNVIKEIEFSGLHIFQYSDREGTIASNMDG 347

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440
           +VD   K +R   L +  +E  +   +  +G++  + +    +++G+  G S     V  
Sbjct: 348 KVDAKTKKQRADSLDQLKQEMILESREKYLGKV--LEVLVEEEKEGEYFGYSQNYLRVKF 405

Query: 441 NSKNHN-IGDIIKVRITDVKISTLYGE 466
            S+  N I  +I  +I  ++   L GE
Sbjct: 406 KSEEKNLINQLINTKIKSIEDDILIGE 432


>gi|70728629|ref|YP_258378.1| ribosomal protein S12 methylthiotransferase [Pseudomonas
           fluorescens Pf-5]
 gi|123734889|sp|Q4KHA5|RIMO_PSEF5 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|68342928|gb|AAY90534.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Pseudomonas
           fluorescens Pf-5]
          Length = 445

 Score =  173 bits (439), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 142/471 (30%), Positives = 232/471 (49%), Gaps = 65/471 (13%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  FV S GC   + DS R+      +GY+ V++  DAD++V+NTC   + A  +    
Sbjct: 10  PKVGFV-SLGCPKALVDSERILTQLRMEGYDVVSTYQDADVVVVNTCGFIDSAKAESLEV 68

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G         IKE G   V+V GC+   EG  I    P V  V GPQ Y          
Sbjct: 69  IGE-------AIKENGK--VIVTGCMGVEEGN-IRDVHPSVLAVTGPQQY---------- 108

Query: 144 RFGKRVVDTDYSV-EDKFERLSIVD----GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
              ++VV+  + V   K +   ++D     G        A+L I EGC+  C+FC++P  
Sbjct: 109 ---EQVVNAVHEVVPPKQDHNPLIDLVPPQGIKLTPRHYAYLKISEGCNHSCSFCIIPSM 165

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTF 247
           RG  +SR +  V+DEA++L+ +GV E+ ++ Q+ +A           W G  +   K   
Sbjct: 166 RGKLVSRPVGDVLDEAQRLVKSGVKELLVISQDTSAYGVDVKYRTGFWNGAPV---KTRM 222

Query: 248 SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307
           ++L  +LS +   VRL Y   +P       + A G    ++PYL +P Q  S ++LK+M 
Sbjct: 223 TELCEALSTLGVWVRLHYVYPYPHVDELIPLMAAGK---ILPYLDIPFQHASPKVLKAMK 279

Query: 308 RRHTAYEYRQI--IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           R   A+E + +  I   R + P++ I S FIVGFPGET++DF+  ++ + +    +   F
Sbjct: 280 R--PAFEDKTLARIKNWREICPELIIRSTFIVGFPGETEEDFQYLLNWLTEAQLDRVGCF 337

Query: 366 KYSPRLGTPGSNM-LEQVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKH 421
           +YSP  G P +++ LE V + VK    ER +  Q+++   ++      +G+ IEVLI++ 
Sbjct: 338 QYSPVEGAPANDLDLEVVPDEVKQDRWERFMAHQQEISSARLQQR---IGKEIEVLIDE- 393

Query: 422 GKEKGKLVGR----SPWLQSVVL--NSKNHNIGDIIKVRITDVKISTLYGE 466
             ++   VGR    +P +   V    + +   GD +  R+TD     L+ E
Sbjct: 394 -VDENGAVGRCFFDAPEIDGNVFIDGAGDLKPGDKVWCRVTDADEYDLWAE 443


>gi|146337530|ref|YP_001202578.1| putative MiaB-like tRNA modifying enzyme [Bradyrhizobium sp.
           ORS278]
 gi|146190336|emb|CAL74332.1| putative MiaB-like tRNA modifying enzyme [Bradyrhizobium sp.
           ORS278]
          Length = 443

 Score =  173 bits (439), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 135/406 (33%), Positives = 201/406 (49%), Gaps = 41/406 (10%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V ++GC++N ++S  +     + G +        D IV+N+C +  +A  +       IR
Sbjct: 5   VVTFGCRLNAFESELIARHVEAAGAD--------DTIVINSCAVTNEAVAQARQ---SIR 53

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG------PQTYYRLPELLER 142
            LK  R        +VV GC AQ + + +    P V+ V+G      P  +    ++L  
Sbjct: 54  KLKRERPYA----RIVVTGCAAQTQAD-MFAAMPEVDRVIGNDDKLRPDAWRATTQVLAA 108

Query: 143 ARFG-----KRVVDTDYSVEDKFERLSIVDGGYNRKRGVT-AFLTIQEGCDKFCTFCVVP 196
            RFG     K  V    +V +    L  VDG    +RG+   F+ +Q GCD  CTFC++P
Sbjct: 109 PRFGIDATEKVAVSDIMAVTEMAPHL--VDGF---QRGLPRVFVQVQNGCDHRCTFCIIP 163

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256
           Y RG   S  +  VVD+ R L + G  EI L G ++ ++ G  L G       +   L  
Sbjct: 164 YGRGNSRSVPMGAVVDQVRTLAERGHAEIVLTGVDLTSY-GADLPGTPKLGLLVKQILRH 222

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           +  L RLR ++    +    L+ A  D   LMP+LHL +Q+G D ILK M RRH   +  
Sbjct: 223 VPELKRLRISSIDSIEADADLLDALADDARLMPHLHLSLQAGDDLILKRMKRRHVRADAI 282

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
              D++R +RPDIA+ +D I GFP ET++ F  ++DLV+  G      F YSPR GTP +
Sbjct: 283 AFCDQVRRLRPDIALGADLIAGFPTETEEMFTRSLDLVEACGLTLLHVFPYSPRPGTPAA 342

Query: 377 NMLEQVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419
            M  QVD  V   +A RL  + +    +++   DA +G   EVLIE
Sbjct: 343 RM-PQVDGAVIRDRARRLRAVGEAALRRRL---DAEIGCAREVLIE 384


>gi|323143992|ref|ZP_08078646.1| ribosomal protein S12 methylthiotransferase RimO [Succinatimonas
           hippei YIT 12066]
 gi|322416241|gb|EFY06921.1| ribosomal protein S12 methylthiotransferase RimO [Succinatimonas
           hippei YIT 12066]
          Length = 441

 Score =  173 bits (439), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 134/451 (29%), Positives = 213/451 (47%), Gaps = 38/451 (8%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R  + S GC  N+ D+ R+  +  ++GY+   + +D DLIV+NTC     A E+    +G
Sbjct: 6   RIGLISLGCAKNLVDTERLTSVLIAKGYQIEANYEDCDLIVVNTCGFISPAVEESLEAIG 65

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           +  +             V+V GC+  A+ + IL+  P V  V GP T         RA  
Sbjct: 66  QAVSYAPK---------VIVTGCLG-AKAQLILKEYPQVAAVYGPGT---------RASV 106

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
             R + T      +     +   G        A+L I EGC   C FC++P  RG   SR
Sbjct: 107 -LRGIRTLIGEPPQEAVQHVNPSGILLTPPHYAYLKIAEGCRHRCAFCIIPSLRGPLRSR 165

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLR 264
           +   +  EA  L   GV E+ ++ Q+ + +   G D   + T S L   L+ +K  +R+ 
Sbjct: 166 NPDDIYKEASDLTSRGVKELLIIAQDSSDY---GFDLKNQPTLSQLCKKLASLKRWLRIH 222

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           Y   +P   ++ +++   D ++++PYL +P+Q  S+RILK M R     +    I+  R 
Sbjct: 223 YV--YPSKEANKIVELMAD-NIVLPYLDVPLQHASERILKQMRRPGNTEKMLATIENWRK 279

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           +RPDIAI S FI GFPGET++DF   +  + +    +   F YS   G   ++    V  
Sbjct: 280 IRPDIAIRSTFITGFPGETEEDFSELLSFIKEAKLDRVGCFPYSDVDGAAANDFPNPVPL 339

Query: 385 NVKAERLLCLQKKLREQQVSFN--DACVGQIIEVLIEKHGKEKGKLVGRSPWLQS----- 437
            ++ ER   L +   ++Q+S     A +G++ +V+I+    E G  VGRS +        
Sbjct: 340 EIREERAAILMET--QEQISREKLKARIGKVYDVVIDTLN-EDGIAVGRSKYEAPDVDGI 396

Query: 438 -VVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
             + N+K    GDI+KV IT      L GEL
Sbjct: 397 ITIHNAKGIREGDIVKVEITASDTHDLQGEL 427


>gi|315187099|gb|EFU20856.1| MiaB-like tRNA modifying enzyme [Spirochaeta thermophila DSM 6578]
          Length = 445

 Score =  173 bits (439), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 135/446 (30%), Positives = 214/446 (47%), Gaps = 42/446 (9%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  +   F   G+         DL ++NTC +  K+ +K    + +I   
Sbjct: 9   TLGCKLNQYETEGIAAAFREAGFRIGEFPQSGDLYIVNTCTVTSKSEQKARRIIRKI--- 65

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIV------NVVVGPQTYYRLP-ELLERA 143
                +E  + LVVV GC  Q E +E+   S  V         +      RLP E L+ +
Sbjct: 66  ----AREHPEALVVVTGCYPQLERDEVQALSDRVIALPLEEKPLLLHLPSRLPDEDLDPS 121

Query: 144 RFGK--RVVDTDYSVEDKFER-LSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           R  +  + + T + ++    R L  VD      R   +FL IQ+GCD+ CT+C VP  RG
Sbjct: 122 RVERLLQEIRTQFPLDRTAGRFLYRVDRPAFHAR---SFLKIQDGCDRRCTYCRVPLARG 178

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
             +S   ++++   ++L   GV EI L G N+  +R + LD        L ++       
Sbjct: 179 RAVSDDPARILQRVQELEGRGVSEIVLTGVNLAQYRWESLDLGGLLLRLLSHT-----SR 233

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
           +R R ++  P   S+ L  A     +  P+ HLPVQSGS+R+L+ M R +TA E   +I 
Sbjct: 234 LRFRISSLEPEGFSEALWDALSSPRIC-PHFHLPVQSGSNRVLRKMGRWYTAEEISALIA 292

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           R+R V  D  IS DFIVGFPGET +DF AT   +D+  ++ A  F+YSPR GT       
Sbjct: 293 RLRDVSTDPFISGDFIVGFPGETREDFEATRAFLDENAFSGAHLFRYSPRPGTAAYASKA 352

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440
            V E V  ER   L   +     ++     G+++EV+ E+   + G+        +  V 
Sbjct: 353 HVPERVAKEREEALHACVEVHASAYLARQKGRVVEVIPEQERVKAGQ--------RYAVG 404

Query: 441 NSKNHNI--------GDIIKVRITDV 458
            S+N+ +        G+ ++V + DV
Sbjct: 405 TSENYLLVWVPVPLEGETVRVEVGDV 430


>gi|291542169|emb|CBL15279.1| SSU ribosomal protein S12P methylthiotransferase [Ruminococcus
           bromii L2-63]
          Length = 446

 Score =  173 bits (439), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 127/445 (28%), Positives = 211/445 (47%), Gaps = 18/445 (4%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N  D+  +     ++G+  VN   DAD +++NTC   E A ++  + +  +  L
Sbjct: 9   SLGCAKNQVDAEMLLYTLKNRGFIIVNDPADADAVIVNTCGFIESAKQESINEIIELGKL 68

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
           K+    EG    ++V GC+AQ    EI  +   V+ V+G      + +++     G++  
Sbjct: 69  KD----EGKIKAIIVTGCLAQRYKSEISEQLYEVDSVIGIGANETIADIVLETLDGQKC- 123

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
               S  DK   L +  G        TA+L I EGCD  C++C +P  RG   SR +  V
Sbjct: 124 ---ESFPDKV-CLPLEGGRILSTPPYTAYLKIAEGCDNRCSYCAIPMIRGRFRSRDIEDV 179

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270
           V EA  L + GV E+ ++ Q+   + G+   G K   ++LL  L  I G   +R    +P
Sbjct: 180 VKEAEGLAERGVKELNVIAQDTTRF-GEDKYG-KPMLAELLRRLCRIDGFKWIRVLYCYP 237

Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330
             ++D LI      D ++ Y+ +P+Q     +L+ MNR         ++++I+   P++ 
Sbjct: 238 DRITDELIDTIAGEDKIVKYMDIPLQHCDGDVLRRMNRHGDRESLTALMNKIKDKIPNVI 297

Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER 390
             S FI GFPGET++ F    +    + + +   F YSP   T  + M +Q+DE +K +R
Sbjct: 298 FRSTFITGFPGETEEQFNELAEFAADMKFQRLGCFAYSPEEDTKAAEMPDQIDEEIKQKR 357

Query: 391 LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVL---NSK 443
              + +  ++    + ++ VG+ IEVL+E   K      GRS    P +   V    + +
Sbjct: 358 ADIIMEHQQQVMAEYCESLVGKEIEVLVEGFDKLAECFFGRSYADAPEVDGCVFFTCDGE 417

Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468
               GD +KVR+TD       GE V
Sbjct: 418 KPKAGDFVKVRVTDYTGCDPVGEFV 442


>gi|159041572|ref|YP_001540824.1| RNA modification protein [Caldivirga maquilingensis IC-167]
 gi|157920407|gb|ABW01834.1| RNA modification enzyme, MiaB family [Caldivirga maquilingensis
           IC-167]
          Length = 422

 Score =  173 bits (439), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 143/460 (31%), Positives = 227/460 (49%), Gaps = 60/460 (13%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIRE-------KAAEK 79
           +++++YGC +N  DS  ME+     GY +VN    ADLI++NTC +RE       KA EK
Sbjct: 4   YYIETYGCWLNKADSALMEEDLRRMGYVKVNDPAQADLILVNTCAVREDSEIRELKAIEK 63

Query: 80  VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL 139
            YS LG+                ++VAGC+ +A   EI+R +P   ++V P +   L EL
Sbjct: 64  -YSRLGK---------------KLIVAGCLTKARPSEIMRLAPDA-LIVNPSSVENLAEL 106

Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           L+                +  ERL +    Y     V   + IQ GC   C++CV+ YTR
Sbjct: 107 LKGG-------------VNLTERLMVRIPKYYESSHVYV-VPIQVGCLGNCSYCVIKYTR 152

Query: 200 G---IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-RGKGLDGEKCTFSDLLYS-L 254
           G      S  LS V +   K +  G  EI L GQ ++A+ + KG D       DLL + L
Sbjct: 153 GGMGWVKSADLSVVKESIAKAVARGAREIYLTGQEISAYGKDKGYD-----LVDLLEAVL 207

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL------MPYLHLPVQSGSDRILKSMNR 308
            +++G   +R     P ++   +   H  +DV+        + H+PVQSGSD++L+ M R
Sbjct: 208 RDVEGRYLIRLGMLEPLELEGMI---HRLIDVIKNDWRIYRFFHIPVQSGSDKVLRLMKR 264

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
           ++T   +++ ++ IR    +  I++D IVG PGE D DF+ ++ L+ ++G  +    +YS
Sbjct: 265 KYTVDLFKREVELIRRSFRNSFIATDIIVGHPGEDDSDFQESVRLIRELGIDKVHVARYS 324

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL 428
           PR  T  + M  QV + VK +R   L K   E   S N   VG   E LI   G +   L
Sbjct: 325 PRPFTEAAYM-RQVPDQVKKQRSSMLSKVALEVAYSRNLEYVGGTYEGLISSIGFKGRGL 383

Query: 429 VGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           + R    + V++N    ++G  +K+++T      L G+++
Sbjct: 384 MARLMDYRPVIIN--EGDLGSFVKIKVTGASSINLIGKII 421


>gi|260464162|ref|ZP_05812355.1| MiaB-like tRNA modifying enzyme [Mesorhizobium opportunistum
           WSM2075]
 gi|259029965|gb|EEW31248.1| MiaB-like tRNA modifying enzyme [Mesorhizobium opportunistum
           WSM2075]
          Length = 446

 Score =  173 bits (438), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 131/447 (29%), Positives = 211/447 (47%), Gaps = 46/447 (10%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
            P R  V ++GC++N Y+S    ++   +             ++ NTC +  +A  +   
Sbjct: 18  APSRIDVVTFGCRLNTYES----EVMRREAETAGLGALAGGAVIFNTCAVTGEAVRQARQ 73

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG------PQTYYRL 136
            + + R       ++     ++V GC AQ E E+       V++V+G        +Y  L
Sbjct: 74  AIRKAR-------RDNPQARIIVTGCAAQTEPEKFAAMDE-VDLVLGNEEKLRAHSYRAL 125

Query: 137 PEL----LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTF 192
           P+      E+AR     V+  +SV +    +  VD    R R   AF+ +Q GCD  CTF
Sbjct: 126 PDFGVNDTEKAR-----VNDIFSVRETAGHM--VDAIEGRAR---AFVQVQNGCDHRCTF 175

Query: 193 CVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLY 252
           C++PY RG   S  +  VV++ ++L  NG  EI L G ++ ++ G  L G       +  
Sbjct: 176 CIIPYGRGNSRSVPMGAVVEQVKRLAGNGYAEIVLTGVDMTSF-GADLPGAPKLGKLVKT 234

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
            L ++  + RLR ++    +  D L+ A  +   LMP+LHL +QSG D ILK M RRH  
Sbjct: 235 ILRQVPDVKRLRLSSIDSIEADDELLDAIANEPRLMPHLHLSLQSGDDMILKRMKRRHLR 294

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
            +  +  + +R +RP I   +D I GFP ETDD F  ++++V + G      F +SPR G
Sbjct: 295 DQSIRFCEDVRKLRPAIVFGADIIAGFPTETDDMFENSINIVAECGLTHLHVFPFSPREG 354

Query: 373 TPGSNMLEQVDENVK--AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG 430
           TP + M +   E VK  A RL    +    + +S   +  G    +LIE+ G      +G
Sbjct: 355 TPAARMPQLRREVVKQRAARLRAAGEAAYRRHLS---SLPGTRQSILIERDG------LG 405

Query: 431 RSPWLQSVVLNSKNHNIGDIIKVRITD 457
           R+       L +     G+I++  ITD
Sbjct: 406 RTEGFTLAALGTGAP--GEIVEATITD 430


>gi|189485228|ref|YP_001956169.1| hypothetical protein TGRD_225 [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
 gi|170287187|dbj|BAG13708.1| conserved hypothetical protein [uncultured Termite group 1
           bacterium phylotype Rs-D17]
          Length = 405

 Score =  173 bits (438), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 103/359 (28%), Positives = 185/359 (51%), Gaps = 43/359 (11%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +++++ ++GC++N Y+S  + + F    +E     ++AD+I+ N+C +   A +K+  FL
Sbjct: 2   KKYYIHTFGCKVNQYESQLISEKFRKDNFECTQKPEEADIIIFNSCTVTADADKKLEYFL 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R   L N R K      +++ GC+ + +  +I    P + ++      +          
Sbjct: 62  RRATKLPN-RPK------IMLTGCIVKNKNIDIKNLFPDIEIITDKTKLF---------- 104

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
                      +E + +++S  D      R   AFL IQ+GC  FC++C+VPY R    S
Sbjct: 105 -----------IEPQKQKVSGFD------RHSRAFLKIQDGCKSFCSYCIVPYVRSTLWS 147

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           +  ++V+ E + L+ +G  EI L G +   + G GL       SDLL  + +I    R+R
Sbjct: 148 KPENEVLSEIKNLVKSGYSEIVLTGIHTGKYDG-GL-------SDLLEKIIKIPLAFRVR 199

Query: 265 YTTSHPRDMSDCLIK-AHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
            ++    ++ D  I+    + + +  +LH+P+QSGSD ILK MNR ++  E+ + + +I 
Sbjct: 200 ISSVELSEIDDKFIELIETNTEKICRHLHVPLQSGSDEILKQMNRNYSTKEFEKKVSKIM 259

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
            + PD+A+++D I GFPGET+   + T D V +I +A+   F+YS R  T  S    +V
Sbjct: 260 RILPDLALTTDIITGFPGETEKHHKETCDFVKQILFARFHIFRYSYRQETKASTFGNKV 318


>gi|294782589|ref|ZP_06747915.1| Fe-S oxidoreductase [Fusobacterium sp. 1_1_41FAA]
 gi|294481230|gb|EFG29005.1| Fe-S oxidoreductase [Fusobacterium sp. 1_1_41FAA]
          Length = 439

 Score =  173 bits (438), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 112/371 (30%), Positives = 192/371 (51%), Gaps = 39/371 (10%)

Query: 33  GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92
           GC++N Y++  +++    +GYE V   D +D+ ++N+C +   A  K  + L R + +  
Sbjct: 13  GCKVNQYETESIKNQLIKRGYEEVPFEDKSDIYIINSCTVTSIADRKTRNMLRRAKKI-- 70

Query: 93  SRIKEGGDLLVVVAGCVAQAEGEEILR------------RSPIVNVVVGPQTYYRLPELL 140
                  +  V+V GC AQ    EIL             +S IVN V   +         
Sbjct: 71  -----NPEAKVIVTGCYAQTNSREILEIEDVDFVIDNKNKSNIVNFVGAIEDIS-----F 120

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           ER + G    + +Y  E +F  L         +    A++ IQ+GC+ FC++C +P+ RG
Sbjct: 121 EREKNGNIFQEKEYQ-EYEFATL---------REMTRAYVKIQDGCNHFCSYCKIPFARG 170

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC-TFSDLLYSLSEIKG 259
              SR    ++ E  KL+++G  E+ L+G +++A+   G D EK  +F  LL  + +IK 
Sbjct: 171 KSRSRKKENILKEIEKLVEDGFKEVILIGIDLSAY---GEDFEKKDSFESLLEDILKIKD 227

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           L R+R  + +P  +SD  I    + + LMP+LH+ +QS  D +LK+M R + +   R+ +
Sbjct: 228 LKRVRIGSVYPDKISDKFIDLFKNKN-LMPHLHISLQSCDDTVLKNMRRNYGSSLIRESL 286

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            +++S   ++  ++D IVGFP E D  F+ T +++ +I ++    F+YS R GT  SNM 
Sbjct: 287 LKLKSKVKNMEFTADVIVGFPKEDDSMFQNTRNVIKEIEFSGLHIFQYSDREGTIASNMD 346

Query: 380 EQVDENVKAER 390
            +VD   K +R
Sbjct: 347 SKVDAKTKKQR 357


>gi|221222491|sp|O29021|Y1247_ARCFU RecName: Full=Putative methylthiotransferase AF_1247
          Length = 424

 Score =  173 bits (438), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 132/447 (29%), Positives = 230/447 (51%), Gaps = 31/447 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R  +++YGC  N  DS  M   F S  +E ++S++DA+++++N+C + +    K+   + 
Sbjct: 2   RVAIETYGCTTNQADSDIMRG-FLSGEFE-LSSVEDAEVVIINSCGVIDFTERKI---IR 56

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R+ +LK    +EG    VV+AGC+ +   E +     + +  + P     + + +  A  
Sbjct: 57  RMLDLK----REGKK--VVLAGCLTRISKEAL----SVADSALSPDNLDMVVDAVYSALN 106

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G+++  T+    DK E   +       +    A ++I EGC   C+FC   + RG   S 
Sbjct: 107 GRKLF-TERRFIDKAEFSHL---KCRLRENAIAIVSISEGCLGKCSFCATKFARGRLRSF 162

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           S+  +V EA + +  G  EI L  Q+  A+   G+D  +    +LL  +SEI+G  R+R 
Sbjct: 163 SMDAIVREAERAVRAGYREIQLTSQDTGAY---GMDKGRAMLPELLRKISEIEGEFRVRV 219

Query: 266 TTSHPRD---MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
              +P+    M D LI A+   + +  +LH+PVQSG +RIL+ M R HT  +Y ++++  
Sbjct: 220 GMMNPQHAVRMLDELINAYSS-EKIYKFLHIPVQSGDNRILEDMKRNHTVEDYVEVVEAF 278

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+   D+ IS+D IVGFP ET++ F  + +L+ +         +YS R GTP +  L  +
Sbjct: 279 RNSFDDVLISTDIIVGFPTETEEAFWKSYELIKETRPDIVNITRYSARKGTPAAR-LRDI 337

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
              +K ER   L   +R+  +  N   VG+ + VL+ K GK  G+ + R    ++VV   
Sbjct: 338 PGWIKKERSRKLTDLMRKIGLENNKRFVGKKLRVLVTKEGK-NGRNLARMNSYRAVVTEG 396

Query: 443 KNHNIGDIIKVRITDVKISTLYGELVV 469
               +G+ ++V+I D + + L G+L  
Sbjct: 397 A---VGEFVEVKIKDCRFNYLIGQLAA 420


>gi|325955310|ref|YP_004238970.1| MiaB-like tRNA modifying enzyme [Weeksella virosa DSM 16922]
 gi|323437928|gb|ADX68392.1| MiaB-like tRNA modifying enzyme [Weeksella virosa DSM 16922]
          Length = 444

 Score =  173 bits (438), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 123/428 (28%), Positives = 209/428 (48%), Gaps = 17/428 (3%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N  ++  +       GY++V     A + V+NTC +   A ++        R +
Sbjct: 12  TLGCKLNFSETSTIARNLQDNGYQKVEFHQPASVYVINTCSVTANADKEC-------RTI 64

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
             + +K   +  VVV GC AQ + EEI      V++V+G    + + + L+     K+  
Sbjct: 65  VKNALKANPNGFVVVVGCYAQLKPEEIASIEG-VDLVLGASEKFNIAQYLDD--LEKQDE 121

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
              +S E   +      G Y+      AFL +Q+GCD  CT+C +P  RGI  S  L  V
Sbjct: 122 TIIHSCE--IDEADFYVGSYSIGDRTRAFLKVQDGCDYKCTYCTIPLARGISRSDELHNV 179

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK---CTFSDLLYSLSEIKGLVRLRYTT 267
           +  AR++ +  + EI L G N+  + GKG  G K    TF +L+ +L E+  + R+R ++
Sbjct: 180 LKNAREIANQDIKEIVLTGVNIGDY-GKGEFGNKKHEHTFLELVEALDEVDNIERIRISS 238

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
             P  + +  I         +P+ H+P+QSGSD +LK M RR+    Y+  ++ IR + P
Sbjct: 239 IEPNLLKNETISFVAQSKRFVPHFHIPLQSGSDVLLKKMKRRYLTALYKDRVESIRKIMP 298

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
           +  I  D IVGFPGET++ F  T   +  +  +    F YS R  T   +    V  +V+
Sbjct: 299 NACIGVDVIVGFPGETEELFMETYHFLQALPISYLHVFTYSERDNTEAIDFPGVVPYHVR 358

Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNI 447
            ER   L+    +++++F  + +G   +VL E H  + GK+ G +     V  + +  +I
Sbjct: 359 KERNKRLRILSEKKRLAFYQSQLGSTQKVLWE-HENKNGKMYGFTENYVKVEADYQEESI 417

Query: 448 GDIIKVRI 455
             I +V +
Sbjct: 418 NQIQEVEL 425


>gi|195584188|ref|XP_002081896.1| GD25482 [Drosophila simulans]
 gi|194193905|gb|EDX07481.1| GD25482 [Drosophila simulans]
          Length = 556

 Score =  173 bits (438), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 132/467 (28%), Positives = 225/467 (48%), Gaps = 45/467 (9%)

Query: 18  VDQCIVP--QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREK 75
           + + ++P  Q+ FVK++GC  N  DS  M     + GY R++  ++ADL +LN+C ++  
Sbjct: 62  IHESVIPGTQKVFVKTWGCAHNNSDSEYMAGQLAAYGY-RLSGKEEADLWLLNSCTVKNP 120

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVN--VVVGPQTY 133
           + +         RN   S ++ G    VVVAGCV Q        +S  +N   V+G Q  
Sbjct: 121 SEDT-------FRNEIKSGMQNGK--YVVVAGCVPQGAP-----KSDYLNGLSVIGVQQI 166

Query: 134 YRLPELLERARFGKRV--VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCT 191
            R+ E++E    G  V  +     V  +    + +     RK  +   ++I  GC   CT
Sbjct: 167 DRVVEVVEETLKGHSVQLLQNKKKVHGRRVAGAPLSLPKVRKNPLIEIISINSGCLNQCT 226

Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLL 251
           +C   + RG   S    +VV+ AR+    G CEI L  ++  A+ G+ +     +  +LL
Sbjct: 227 YCKTKHARGDLASYPPEEVVERARQSFAEGCCEIWLTSEDTGAY-GRDIGS---SLPELL 282

Query: 252 YSLSEI--------KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
           + L E+         G+    Y   H  +++  +         +  +LH+PVQSGSD +L
Sbjct: 283 WKLVEVIPENCMLRVGMTNPPYILEHLEEVAKVMQHPR-----VYSFLHVPVQSGSDSVL 337

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
             M R +   ++  ++D +R   P + I++D I GFP ET+DDF  TM L  K  +   F
Sbjct: 338 GEMKREYCRQDFEHVVDFLRERVPGVTIATDIICGFPTETEDDFEETMTLCAKYRFPSLF 397

Query: 364 SFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDAC--VGQIIEVLIEKH 421
             ++ PR GTP + M E++  N+  +R     K+L +   S+      VG+I  VL+ + 
Sbjct: 398 INQFFPRPGTPAAKM-ERIPANLVKKR----TKRLTDLFYSYEPYAERVGEIYTVLVTEV 452

Query: 422 GKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
             +K   VG +   + V+L  +++ +G  + VRIT     ++ GE++
Sbjct: 453 SHDKLHYVGHNKSYEQVLLPMRDNLLGTRVNVRITSASKFSMVGEIL 499


>gi|91205468|ref|YP_537823.1| MiaB-like tRNA modifying enzyme [Rickettsia bellii RML369-C]
 gi|157827173|ref|YP_001496237.1| MiaB-like tRNA modifying enzyme [Rickettsia bellii OSU 85-389]
 gi|91069012|gb|ABE04734.1| MiaB-like tRNA modifying enzyme [Rickettsia bellii RML369-C]
 gi|157802477|gb|ABV79200.1| MiaB-like tRNA modifying enzyme [Rickettsia bellii OSU 85-389]
          Length = 415

 Score =  173 bits (438), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 121/398 (30%), Positives = 204/398 (51%), Gaps = 37/398 (9%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           ++GC++N+Y+S  +     + G + V         V NTC +  K+AEK     G IR  
Sbjct: 10  TFGCRLNIYESEIIRKNLAASGLDNV--------AVFNTCAV-TKSAEK--QARGAIRAA 58

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ-----TYYRLPELLERARF 145
           K    K   DL ++V GC AQ    ++    P V+ V+G +     ++Y++ +       
Sbjct: 59  K----KNNPDLKIIVTGCSAQT-NPKMYGDMPEVDKVIGNEEKLLPSHYQIND------- 106

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            K VV+   SV++    L     G +R     AF+ +Q GCD  CTFC++PY RG   S 
Sbjct: 107 EKIVVNDIMSVKETANHLISSFDGKSR-----AFIQVQNGCDHNCTFCIIPYGRGRNRSI 161

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS-LSEIKGLVRLR 264
           ++  + ++ + L+ NG  E+   G +V A+ G  L G   TF+ ++   L+ +  L RLR
Sbjct: 162 AIGAIAEQVKHLVLNGFKEVVFTGVDVTAY-GGDLPGSP-TFAQMIKRVLNLVPELKRLR 219

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
            ++    ++ D L +     + +MP+ H+ +Q+G D ILK M RRH   E  +  +++R+
Sbjct: 220 LSSIDVAEIDDELFELLAYNERIMPHFHISLQAGDDMILKRMKRRHNRAEIIEFCNKLRA 279

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           +RP+++  +D I GFP ET + F  T  L+ +        F YS R GTP + M  QV +
Sbjct: 280 IRPEVSFGADIIAGFPTETPEMFENTRKLIAEAELQYLHVFPYSEREGTPAARM-PQVPK 338

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422
            ++ ER   L+++ + Q   F    +GQ +E+L+E + 
Sbjct: 339 AIRKERAEILRQEGQRQLAEFFKKHIGQKVELLVENNN 376


>gi|187250673|ref|YP_001875155.1| MiaB family RNA modification enzyme [Elusimicrobium minutum Pei191]
 gi|238065353|sp|B2KB59|RIMO_ELUMP RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|186970833|gb|ACC97818.1| RNA modification enzyme, MiaB family [Elusimicrobium minutum
           Pei191]
          Length = 430

 Score =  173 bits (438), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 126/445 (28%), Positives = 217/445 (48%), Gaps = 19/445 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + F  S GC  N+ D+  M  +   + +  V    +AD I++NTC   + A E+    + 
Sbjct: 3   KIFTISLGCSKNLTDTEEMLGILNHKKHYLVADESEADTILINTCAFIKPAREEADREIK 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R   LK     +G    ++VAGC+ Q EG+ +  + P+V+  +G +   ++  +++R + 
Sbjct: 63  RASKLK----AQGKIEKLIVAGCLTQKEGKSLPSKYPLVDAFIGLKGIEKIDNVIKRPK- 117

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                   +S     + +   D         +A+L + +GC+  C +C +P  RG   S+
Sbjct: 118 --------HSFCPAPDYIKAPDFKLQLTAPHSAYLKVADGCNNRCAYCTIPAIRGPFRSK 169

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           S+  +V EA+ +  NGV EI+L+ Q+  A+ G+ + G K +   LL  L +IKG+   R 
Sbjct: 170 SMEDIVAEAKAMEKNGVKEISLIAQDTTAY-GQDIFG-KPSLVKLLKKLVKIKGIEWFRI 227

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
             ++P  ++  L+        +  YL +P+Q  S  +LK+MNRR T  E R  I  IR +
Sbjct: 228 MYAYPETVTKDLLDFIACEPKICRYLDMPLQHISAPVLKAMNRRSTEDEVRAKIKLIRQI 287

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P +++ ++FI GFPGET +DF      + +  +     F YS   GTP + M  QV E 
Sbjct: 288 VPGMSLRTNFIAGFPGETAEDFEKLKKFIAEAKFNNVGVFAYSKEDGTPAAVMKRQVAEK 347

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQS--VVLNSK 443
           +K +R+  L         S N    G+ ++VL++      G+    SP +     V  +K
Sbjct: 348 IKKQRVEELVSAQSRVIDSINRKLKGKTVKVLLDNLF--CGRSESDSPDIDGRVEVKGNK 405

Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468
            +  GD +KV+IT  K     G+++
Sbjct: 406 KYKAGDFVKVKITSAKGYNRTGKII 430


>gi|114320655|ref|YP_742338.1| MiaB-like tRNA modifying enzyme YliG [Alkalilimnicola ehrlichii
           MLHE-1]
 gi|122311674|sp|Q0A8I9|RIMO_ALHEH RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|114227049|gb|ABI56848.1| SSU ribosomal protein S12P methylthiotransferase [Alkalilimnicola
           ehrlichii MLHE-1]
          Length = 443

 Score =  173 bits (438), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 138/465 (29%), Positives = 214/465 (46%), Gaps = 51/465 (10%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  FV S GC   + DS R+      +GYE V   ++AD++V+NTC   E A  +    
Sbjct: 10  PRVGFV-SLGCPKALVDSERILTQLRVEGYEIVGGYEEADVVVVNTCAFIEAAQAESLDA 68

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G         + E G   VVV GC+   +G+ I    P V  + GPQ Y         A
Sbjct: 69  IGEA-------LDENGK--VVVTGCLG-TKGDLIRETHPGVLAITGPQDY--------EA 110

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
                         D F  L    G     R   A+L I EGC+  CTFC++P  RG  +
Sbjct: 111 VMAAVHAQCPPPARDAFTGLLPASGVKLTPRHY-AYLKISEGCNHHCTFCIIPQLRGRLV 169

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLY 252
           SR + QV+ EA +L+ +GV E+ ++ Q+ +A           WRG      +   ++L  
Sbjct: 170 SRPVDQVLAEAERLVGDGVRELLVISQDTSAYGVDTRYAAAEWRGVP---RRTRMTELAD 226

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
           +L+E+   VRL Y   +P       + A G +    PYL +P+Q  S RILK+M R    
Sbjct: 227 ALAELGVWVRLHYVYPYPHVDELIPLMAEGRI---APYLDMPLQHASPRILKAMRRPAGG 283

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
               + I R R   PD+ + S FIVGFPGET+DDF+  ++ ++     +   F YSP  G
Sbjct: 284 EAVLERIRRWRQRCPDLTLRSTFIVGFPGETEDDFQVLLEFLEAAELDRVGCFTYSPVEG 343

Query: 373 TPGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV 429
              + + + V E +  +   RL+ LQ ++  ++++     VG    VL++    +    V
Sbjct: 344 AAANALADPVPEAIAEQRQARLMALQAEISARRLARR---VGTECTVLLD--AVDGDAAV 398

Query: 430 GRS----PWLQSVV--LNSKNHNIGDIIKVRITDVKISTLYGELV 468
           GRS    P +  V+    ++    G  +  R+ D     LYG ++
Sbjct: 399 GRSQLEAPEVDGVIHLRGAEGCAPGQWVPARLEDADEHDLYGRVL 443


>gi|294643379|ref|ZP_06721198.1| RNA modification enzyme, MiaB family [Bacteroides ovatus SD CC 2a]
 gi|292641257|gb|EFF59456.1| RNA modification enzyme, MiaB family [Bacteroides ovatus SD CC 2a]
          Length = 243

 Score =  172 bits (437), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 98/244 (40%), Positives = 143/244 (58%), Gaps = 8/244 (3%)

Query: 228 LGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL 287
           +GQNVN++R +   GE  TF  LL +++E    VR+R+TTSHP+DMSD  ++    +  +
Sbjct: 1   MGQNVNSYRFERPTGEVVTFPMLLRTVAEAAPGVRIRFTTSHPKDMSDETLEVIAQVPNV 60

Query: 288 MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDF 347
             ++HLPVQSGS RILK MNR++T   Y   +  I+ + PD  +++D   GF  ET+ D 
Sbjct: 61  CKHIHLPVQSGSSRILKLMNRKYTREWYLDRVAAIKRIIPDCGLTTDIFSGFHSETEKDH 120

Query: 348 RATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE-QVDENVKAERL---LCLQKKLREQQV 403
             ++ L++  GY  AF FKYS R GT  S  LE  V E VK  RL   + LQ +L  +  
Sbjct: 121 AMSLSLMEACGYDAAFMFKYSERPGTYASKHLEDNVPEEVKVRRLNEIIALQNRLSAES- 179

Query: 404 SFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKIST 462
             N  C+G+  EVL+E   K  + +L GR+   + VV +   H +GD + VR+T+   +T
Sbjct: 180 --NQRCIGKTYEVLVEGVSKRSRDQLFGRTEQNRVVVFDRGTHRVGDFVNVRVTEASSAT 237

Query: 463 LYGE 466
           L GE
Sbjct: 238 LKGE 241


>gi|19922432|ref|NP_611207.1| CG6550 [Drosophila melanogaster]
 gi|122087244|sp|Q7K4W1|CDKAL_DROME RecName: Full=CDKAL1-like protein
 gi|7302795|gb|AAF57870.1| CG6550 [Drosophila melanogaster]
 gi|15291579|gb|AAK93058.1| GH28477p [Drosophila melanogaster]
 gi|220945770|gb|ACL85428.1| CG6550-PA [synthetic construct]
          Length = 552

 Score =  172 bits (437), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 132/467 (28%), Positives = 226/467 (48%), Gaps = 45/467 (9%)

Query: 18  VDQCIVP--QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREK 75
           + + ++P  Q+ FVK++GC  N  DS  M     + GY R++  ++ADL +LN+C ++  
Sbjct: 62  IHESVIPGTQKVFVKTWGCAHNNSDSEYMAGQLAAYGY-RLSGKEEADLWLLNSCTVKNP 120

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVN--VVVGPQTY 133
           + +         RN   S ++ G    VVVAGCV Q        +S  +N   V+G Q  
Sbjct: 121 SEDT-------FRNEIESGMRNGKH--VVVAGCVPQGAP-----KSDYLNGLSVIGVQQI 166

Query: 134 YRLPELLERARFGKRV--VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCT 191
            R+ E++E    G  V  +     V  +    + +     RK  +   ++I  GC   CT
Sbjct: 167 DRVVEVVEETLKGHSVQLLQNKKKVHGRRVAGAPLSLPKVRKNPLIEIISINSGCLNQCT 226

Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLL 251
           +C   + RG   S    +VV+ AR+    G CEI L  ++  A+ G+ +     +  +LL
Sbjct: 227 YCKTKHARGDLASYPPEEVVERARQSFAEGCCEIWLTSEDTGAY-GRDIGS---SLPELL 282

Query: 252 YSLSEI--------KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
           + L E+         G+    Y   H  ++++ L         +  +LH+PVQSGSD +L
Sbjct: 283 WQLVEVIPEHCMLRVGMTNPPYILEHLEEVANVLQHPR-----VYSFLHVPVQSGSDSVL 337

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
             M R +   ++  ++D +R   P + I++D I GFP ET+DDF  TM L  K  +   F
Sbjct: 338 GEMKREYCRQDFEHVVDFLRERVPGVTIATDIICGFPTETEDDFEETMTLCAKYRFPSLF 397

Query: 364 SFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDAC--VGQIIEVLIEKH 421
             ++ PR GTP + M +++  N+  +R     K+L +   S+      VG+I  VL+ + 
Sbjct: 398 INQFFPRPGTPAAKM-DRIPANLVKKR----TKRLTDLFYSYEPYADRVGEIYTVLVTEV 452

Query: 422 GKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
             +K   VG +   + V+L  +++ +G  + VRIT     ++ GE++
Sbjct: 453 SHDKLHYVGHNKSYEQVLLPMRDNLLGTRVHVRITSASKFSMVGEIL 499


>gi|118086360|ref|XP_418914.2| PREDICTED: similar to CDK5 regulatory subunit associated protein
           1-like 1 [Gallus gallus]
          Length = 583

 Score =  172 bits (437), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 131/458 (28%), Positives = 222/458 (48%), Gaps = 42/458 (9%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           Q+ +++++GC  N  D   M     + GY+  ++  +ADL +LN+C ++  A +    F 
Sbjct: 62  QKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITDNSAEADLWLLNSCTVKNPAED---HFR 118

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             I+  + +  K      VV+AGCV QA+  +   +      ++G Q   R+ E++E   
Sbjct: 119 NSIKKAQEANKK------VVLAGCVPQAQPRQDYLKG---LSIIGVQQIDRVVEVVEETI 169

Query: 145 FGKRVVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            G  V       +D  +RL  + +D    RK  +   ++I  GC   CT+C   + RG  
Sbjct: 170 KGHSVRLLGQK-KDNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGDL 228

Query: 203 ISRSLSQVVDEARK-LIDNGVCEITLLGQNVNAW-RGKGLDGEKCTFSDLLYSLSEI--- 257
            S  + ++VD A++   D GVCEI L  ++  A+ R  G D        LL+ L E    
Sbjct: 229 ASYPIEELVDRAKQSFQDEGVCEIWLTSEDTGAYGRDIGTD-----LPTLLWKLVEAIPE 283

Query: 258 -----KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
                 G+    Y   H  +M+  L     +   +  +LH+PVQS SD +L  M R +  
Sbjct: 284 GAMLRLGMTNPPYILEHLEEMAKIL-----NHPRVYAFLHIPVQSASDSVLMDMKREYCV 338

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
            ++R+++D ++   P I I++D I GFPGETD+DF+ TM LV++  +   F  ++ PR G
Sbjct: 339 ADFRRVVDFLKEKVPGITIATDIICGFPGETDEDFQETMKLVEQYKFPSLFINQFYPRPG 398

Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFN--DACVGQIIEVLIEKHGKEKGKLVG 430
           TP + M  QV   VK +R     K L +   S+N  D  VG+   VL+ +   +    V 
Sbjct: 399 TPAAKM-HQVPAAVKKQR----TKDLSQLFHSYNPYDHKVGERQRVLVTEESFDSNYYVA 453

Query: 431 RSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            +P+ + V++      +G +++V I +     + G+ V
Sbjct: 454 HNPFYEQVLVPKDPALMGKMVEVNIYEAGKHFMKGQPV 491


>gi|319409457|emb|CBI83106.1| conserved hypothetical protein [Bartonella schoenbuchensis R1]
          Length = 427

 Score =  172 bits (437), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 126/395 (31%), Positives = 196/395 (49%), Gaps = 24/395 (6%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           ++GC++N Y+S  + +   S G +++      D I+ NTC +    AE V      IR  
Sbjct: 7   TFGCRLNSYESEVIREKSASAGLDKLK----GDAIIFNTCAV---TAEAVRQAKQAIRKA 59

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
           K    +E     +VV GC AQ E E     +  V++V+G +         +   FG    
Sbjct: 60  K----RENPHARIVVTGCAAQTEAENFALMTE-VDLVLGNEEKLHTHSYRQFPDFGINH- 113

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVT-AFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209
           D    V D  E  +I         G T  F+ +Q GCD  CTFC++PY+RG   S  +  
Sbjct: 114 DEKLRVNDIMEVRNIAPHMVGAIEGRTRVFVQVQNGCDHRCTFCIIPYSRGPSRSVPMGT 173

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS-LSEIKGLVRLRYTTS 268
           ++++ +K I NGV EI L G ++ ++ G  L G K +   L+ + L  +  L RLR ++ 
Sbjct: 174 IIEQIKKFIGNGVQEIVLTGVDLTSY-GADLPG-KASLGKLVSAILHHVPDLPRLRLSSI 231

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
              ++   LI        +MPYLHL +Q+GS+ ILK M RRH      Q    +R+ RP 
Sbjct: 232 DSIEIDQELIDLLAYEKRIMPYLHLSLQAGSNMILKRMKRRHLRENAIQFCQDLRAKRPT 291

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV-- 386
           +   +D I GFP ET++ F+ ++ L+D+        F +SPR GTP + M  QV+  +  
Sbjct: 292 MVYGADLIAGFPTETEEMFQNSLALIDECNLTHLHVFPFSPREGTPAARM-PQVNREIIK 350

Query: 387 -KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
            +AE+L    KK  ++ +S +     QII  L+EK
Sbjct: 351 TRAEKLRNAGKKAYQKHLSHSKN-TQQII--LVEK 382


>gi|262068261|ref|ZP_06027873.1| Fe-S oxidoreductase [Fusobacterium periodonticum ATCC 33693]
 gi|291377999|gb|EFE85517.1| Fe-S oxidoreductase [Fusobacterium periodonticum ATCC 33693]
          Length = 439

 Score =  172 bits (437), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 124/447 (27%), Positives = 227/447 (50%), Gaps = 40/447 (8%)

Query: 33  GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92
           GC++N Y++  +++    +GYE V     +D+ ++N+C +   A  K  + L R + +  
Sbjct: 13  GCKVNQYETESIKNQLIKRGYEEVPFDHKSDIYIINSCTVTSIADRKTRNMLRRAKKI-- 70

Query: 93  SRIKEGGDLLVVVAGCVAQAEGEEILR------------RSPIVNVVVGPQTYYRLPELL 140
                  +  V++ GC AQ    EIL             +S IVN V   +         
Sbjct: 71  -----NPEAKVIITGCYAQTNSREILEIEDVDFVIDNKNKSNIVNFVGAIEDIS-----F 120

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           ER + G    + +Y  E +F  L         +    A++ IQ+GC+ FC++C +P+ RG
Sbjct: 121 EREKNGNIFQEKEYQ-EYEFATL---------REMTRAYVKIQDGCNHFCSYCKIPFARG 170

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
              SR    ++ E  KL+++G  E+ L+G +++A+ G+  + EK +F  LL  + +IK L
Sbjct: 171 KSRSRKKENILKEIEKLVEDGFKEVILIGIDLSAY-GEDFE-EKDSFESLLEDILKIKDL 228

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R  + +P  ++D  I    + + LMP+LH+ +QS  D +LK+M R + +   R+ + 
Sbjct: 229 KRVRIGSVYPDKITDKFIDLFKNKN-LMPHLHISLQSCDDTVLKNMRRNYGSSLIRESLL 287

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           +++S   ++  ++D IVGFP E D  F+ T +++ +I ++    F+YS R GT  SNM  
Sbjct: 288 KLKSKVKNMEFTADVIVGFPKEDDSMFQNTRNVIKEIEFSGLHIFQYSDREGTIASNMDG 347

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440
           +VD   K +R   L +  +E  +   +  +G++  + +    +++G+  G S     V  
Sbjct: 348 KVDAKTKKQRADSLDQLKQEMILESREKYLGKV--LEVLVEEEKEGEYFGYSQNYMRVKF 405

Query: 441 NSKNHN-IGDIIKVRITDVKISTLYGE 466
            S+  N I ++I V+I  ++   L GE
Sbjct: 406 KSEEKNLINELINVKIKSIENDILIGE 432


>gi|85704067|ref|ZP_01035170.1| MiaB-like tRNA modifying enzyme [Roseovarius sp. 217]
 gi|85671387|gb|EAQ26245.1| MiaB-like tRNA modifying enzyme [Roseovarius sp. 217]
          Length = 423

 Score =  172 bits (437), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 127/439 (28%), Positives = 211/439 (48%), Gaps = 51/439 (11%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  M+++    G      +D+A  +++NTC +  +A  K    + R+R  
Sbjct: 13  TLGCRLNAYETEAMKELAGQAG------LDNA--VIVNTCAVTSEAVRKARQEIRRLR-- 62

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG------PQTYYRLPE--LLER 142
                +E  +  ++V GC AQ E  E     P V+ V+G      P T+ RL    + E 
Sbjct: 63  -----RENPEARLIVTGCAAQTE-PETFAAMPEVDAVIGNTEKMSPATWGRLAGDFIGET 116

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            R    +VD   SV +    L  +DG  +R R   A++ +Q GCD  CTFC++P+ RG  
Sbjct: 117 ERV---LVDDIMSVRETAGHL--IDGFGSRSR---AYVQVQNGCDHRCTFCIIPFGRGNS 168

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            S     VV++ ++L+  G  E+ L G ++ +W G  L         ++  L  +  L R
Sbjct: 169 RSVPAGVVVEQIKRLVGAGYNEVVLTGVDLTSW-GADLPATPKLGDLVMRILRLVPDLPR 227

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LR ++    ++ + L++A      LMP+LHL +Q G D ILK M RRH   +  +  +  
Sbjct: 228 LRISSIDSIEVDENLMQAIATEPRLMPHLHLSLQHGDDLILKRMKRRHLREDAIRFAEEA 287

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R +RP++   +D I GFP ET+  F  ++ LV+         F YSPR GTP + M  QV
Sbjct: 288 RRLRPEMTFGADIIAGFPTETEAHFENSLRLVEDCHLTWLHVFPYSPRPGTPAARM-PQV 346

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL-----VGRSPWLQS 437
           +            + ++++      A   ++   L  +HG+E   L     +GR+     
Sbjct: 347 N-----------GRSIKDRAARLRAAGEARVAAHLAAQHGREHAVLMEAPRMGRTEQFTE 395

Query: 438 VVLNSKNHNIGDIIKVRIT 456
           VV +S     G I++ R+T
Sbjct: 396 VVFDSDRPE-GQIVRARVT 413


>gi|159185331|ref|NP_355629.2| hypothetical protein Atu2694 [Agrobacterium tumefaciens str. C58]
 gi|159140586|gb|AAK88414.2| conserved hypothetical protein [Agrobacterium tumefaciens str. C58]
          Length = 424

 Score =  172 bits (437), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 120/400 (30%), Positives = 187/400 (46%), Gaps = 30/400 (7%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V ++GC++N Y+S  M       G          + +++NTC +  +A  +         
Sbjct: 6   VITFGCRLNTYESEVMRAEAEKAGLN--------NAVLVNTCAVTGEAVRQARQ------ 51

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ------TYYRLPELLER 142
                  ++     ++V GC AQ E ++     P V+ V+G +      +Y  LP+    
Sbjct: 52  -AIRRARRDNPHARIIVTGCAAQTE-KQTFADMPEVDAVLGNEEKLKSASYRALPDFGVS 109

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           A    RV D         + +  +DG       V AF+ +Q GCD  CTFC++PY RG  
Sbjct: 110 AEEKLRVNDIMSIKATAPQMVKHIDGH------VRAFIQVQNGCDHRCTFCIIPYGRGNS 163

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            S  +  VVD+AR+L ++G CEI L G +  ++ G  L GE          L ++  ++R
Sbjct: 164 RSVPMGAVVDQARRLTESGYCEIVLTGVDATSY-GADLPGEPSLGYLAKTLLKQVPDIIR 222

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LR ++    +    L+    D    MP+LHL +Q G D ILK M RRH   +  +  + +
Sbjct: 223 LRLSSIDSIEADHHLMDLIADEPRFMPHLHLSLQHGDDMILKRMKRRHLRADAIRFCNEV 282

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           RS+RPDIA  +D I GFP ET++       L ++ G +    F YSPR GTP   M  Q+
Sbjct: 283 RSLRPDIAFGADMIAGFPTETEEMLENAATLAEECGISSLHVFPYSPREGTPAVRM-PQL 341

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422
           D  +  ER   L+ +    + +     VG +  VL+E  G
Sbjct: 342 DRALVKERAGRLRARGEALKQAHLQNMVGSVQTVLVENSG 381


>gi|87310727|ref|ZP_01092854.1| hypothetical protein DSM3645_06861 [Blastopirellula marina DSM
           3645]
 gi|87286484|gb|EAQ78391.1| hypothetical protein DSM3645_06861 [Blastopirellula marina DSM
           3645]
          Length = 432

 Score =  172 bits (437), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 128/450 (28%), Positives = 219/450 (48%), Gaps = 43/450 (9%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  + +   + GY    + + ADL ++NTC +  +   K    + R+   
Sbjct: 14  TLGCKVNQYETELVREGLVTAGYRDAITEEPADLCIVNTCTVTNEGDSKSRQVIRRL--- 70

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
                ++  D  +VV GC A     E+     +V VV   +    +P+LL   RFG   V
Sbjct: 71  ----ARDNPDARIVVMGCYATRAPAELAVLPNVVEVV---ENKREIPDLL--GRFGVIDV 121

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
            T  S      R               AF+ +Q+GC   CTFC++P  R    SRS  ++
Sbjct: 122 PTGLSTFGDRHR---------------AFVKVQDGCLLRCTFCIIPTVRPEMYSRSSEEI 166

Query: 211 VDEARKLIDNGVCEITLLGQNVNAW-----RGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           + E  +L DNG  EI L G ++  +     RGK    E    + L+ SL+ + G  R+R 
Sbjct: 167 IAEVARLADNGFREIVLTGIHLGHYGVDQNRGKS-KAEWMRLAHLVRSLARLDGDFRIRM 225

Query: 266 TTSHPRDMSDCLIKAHGDL-DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           ++    +++  LI+  G+  D + P+LH+ +QSGSD +L+ M RR  A  +   +DR + 
Sbjct: 226 SSIEATEVTRELIEVMGEFPDRVCPHLHISMQSGSDSVLRRMRRRWGAQRF---VDRCKL 282

Query: 325 VRPDI---AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           ++  +   AIS+D IVGFPGET+ +F  T  +  ++G+++   F +SPR GTP + M + 
Sbjct: 283 LQTSLDQPAISTDIIVGFPGETEAEFEETCAVSREVGFSKIHIFPFSPRKGTPAAEMPDH 342

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLV--GRSPWLQSV 438
           +  +VK++R   L       +  + D+ VG+ +EVL E     E G+ +  G +     V
Sbjct: 343 IPGDVKSDRRRRLADVEAASRQIYFDSLVGRQLEVLGESSETDESGRALVRGTACRYAPV 402

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  ++G++ +V +   +   L   L 
Sbjct: 403 TFEGAAGDVGNLRRVLVKSAQADHLIATLT 432


>gi|226945811|ref|YP_002800884.1| ribosomal protein S12 methylthiotransferase [Azotobacter vinelandii
           DJ]
 gi|226720738|gb|ACO79909.1| Ribosomal protein S12 methylthiotransferase [Azotobacter vinelandii
           DJ]
          Length = 440

 Score =  172 bits (437), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 144/461 (31%), Positives = 217/461 (47%), Gaps = 59/461 (12%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC     DS R+     ++GY  V S ++AD++V+NTC   + A  +    +G     
Sbjct: 12  SLGCPKATVDSERILTQLRTEGYRIVPSYEEADVVVVNTCGFIDSAKAESLDAIGEA--- 68

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               + E G   V+V GC+  +E E I    P V  V GPQ Y       E+       V
Sbjct: 69  ----LAENGK--VIVTGCMGVSE-EAIRNVHPSVLAVTGPQQY-------EQVVSAVHEV 114

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
               +  D F  L    G     R   A+L I EGC+  C FC++P  RG  +SR   +V
Sbjct: 115 APPKADHDPFVDLVPPQGIRLTPRHY-AYLKISEGCNHSCAFCIIPSMRGKLVSRPAGEV 173

Query: 211 VDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYSLSEIKG 259
           + EA +L+  GV E+ ++ Q+ +A           W G+ +   K    +L   L  +  
Sbjct: 174 LGEAERLVGAGVQELLVIAQDTSAYGVDLRYRTDFWNGRPV---KTRLLELCEELGRMGV 230

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
            VRL Y   +P       + A G    ++PYL +P+Q  S +ILK+M R   A+E  Q +
Sbjct: 231 WVRLHYVYPYPSVDELIPLMAAGK---ILPYLDIPLQHASPKILKAMKR--PAFE-DQTL 284

Query: 320 DRIRSVR---PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
            RIR  R   P++ I S FIVGFPGET++DF+  +D + +    +   F+YS   G P +
Sbjct: 285 ARIRKWREICPELTIRSTFIVGFPGETEEDFQYLLDWLSEAQLDRVGCFQYSAVDGAPAN 344

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDA----CVGQIIEVLIEKHGKEKGKLVGRS 432
            +   V E VK ER     ++    Q + + A     +GQ IEVLI++   E+G  VGRS
Sbjct: 345 ELEGAVAEEVKQERW----ERFMAHQQAISAARLQRRIGQEIEVLIDEV-DEQGA-VGRS 398

Query: 433 PWLQSVVLNSKNH-------NIGDIIKVRITDVKISTLYGE 466
            W  +  ++   +         GD ++VR+TD     L+ E
Sbjct: 399 -WADAPEIDGNVYVDSAQVLKPGDKVRVRVTDADEYDLWAE 438


>gi|269139615|ref|YP_003296316.1| Fe-S oxidoreductase [Edwardsiella tarda EIB202]
 gi|267985276|gb|ACY85105.1| Fe-S oxidoreductase [Edwardsiella tarda EIB202]
 gi|304559491|gb|ADM42155.1| Ribosomal protein S12p Asp88 methylthiotransferase [Edwardsiella
           tarda FL6-60]
          Length = 441

 Score =  172 bits (437), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 129/456 (28%), Positives = 219/456 (48%), Gaps = 46/456 (10%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ DS R+     ++GY  V + +DADL+++NTC   + A ++    +G     
Sbjct: 14  SLGCPKNLVDSERILTELRTEGYLVVPTYEDADLVIVNTCGFIDSAVQESLEAIGEA--- 70

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               + E G   V+V GC+   E + I    P V  + GP +Y ++          K V 
Sbjct: 71  ----LHENGK--VIVTGCLGAKENQ-IREVHPKVLEISGPHSYEQV-----LHHVHKYVA 118

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
              +   + F  L + + G        A+L I EGC+  C FC++P  RG   SR +  V
Sbjct: 119 KPQH---NPFTSL-VPEQGVKLTPKHFAYLKISEGCNHRCAFCIIPSLRGDLESRPIGAV 174

Query: 211 VDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYSLSEIKG 259
           +DEA++L D+GV E+ ++ Q+ +A           W G+ +   K +   L   L+ +  
Sbjct: 175 LDEAKRLADSGVRELLVISQDTSAYGADIQHRTGFWNGQPV---KTSMLSLCEQLATLGI 231

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
            +RL Y   +P       + A G L   +PYL +P+Q  S RILK M R        + I
Sbjct: 232 WIRLHYVYPYPHVDDVIPLMAQGKL---LPYLDIPLQHASPRILKLMKRPGAVERTLERI 288

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            R R + P + + S FIVGFPGET++DF+  +D + +    +   F+YSP      + + 
Sbjct: 289 KRWREICPQLTLRSTFIVGFPGETEEDFQMLLDFLREARLDRVGCFQYSPVESAAANELP 348

Query: 380 EQVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPW 434
           +QV + +K    +R + LQ+++  +++      VG  + V+I++  +E   G+ +  +P 
Sbjct: 349 DQVPDEIKQARFDRFMQLQQQISAERLQEK---VGLTLPVIIDEVDEEGAIGRSMADAPE 405

Query: 435 LQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468
           +  VV  +    +  GDI+ V I +     ++G L 
Sbjct: 406 IDGVVYLNGERGVKPGDIVSVTIENADEYDMWGTLA 441


>gi|254486731|ref|ZP_05099936.1| MiaB-like tRNA modifying enzyme [Roseobacter sp. GAI101]
 gi|214043600|gb|EEB84238.1| MiaB-like tRNA modifying enzyme [Roseobacter sp. GAI101]
          Length = 418

 Score =  172 bits (437), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 130/440 (29%), Positives = 204/440 (46%), Gaps = 39/440 (8%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           ++GC++N Y++  M+D+    G E        + +++NTC +  +A  K    + ++R  
Sbjct: 8   NHGCRLNAYETEAMKDLAQQAGLE--------NAVIINTCAVTAEAVRKARQDIRKLRKA 59

Query: 91  K-NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVV------VGPQTYYRLPELLERA 143
             N+R+        +V GC AQ E E   + + +  V+      VG        + +  +
Sbjct: 60  NPNARL--------IVTGCAAQTEPETFAKMAEVDAVIGNTEKMVGATWQGLAADFIGES 111

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
              +  VD   SV +    L  +DG   R R   A++ +Q GCD  CTFC++PY RG   
Sbjct: 112 EAVQ--VDDIMSVTETAGHL--IDGFGTRSR---AYVQVQNGCDHRCTFCIIPYGRGNSR 164

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           S     VVD+ ++L+D G  E+ L G ++ +W G  L  E      ++  L  +  L RL
Sbjct: 165 SVPAGVVVDQIKRLVDKGFNEVVLTGVDLTSW-GADLPSEPKLGDLVMRILRLVPDLPRL 223

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R ++    ++ D L+KA      LMP+LHL +Q G D ILK M RRH   +  +  +  R
Sbjct: 224 RISSIDSIEVDDNLMKAIATEPRLMPHLHLSLQHGDDMILKRMKRRHLRDDAIRFSEEAR 283

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
            +RPD+   +D I GFP ETD  F  ++ LV          F YS R GTP + M   V 
Sbjct: 284 KLRPDMTFGADIIAGFPTETDAMFENSLKLVQDCDLTWLHVFPYSARQGTPAARM-PAVQ 342

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
             +  ER   L+     Q     DA  G++ +VL+E         +GR+         + 
Sbjct: 343 GGLIKERAAQLRAAGDRQVARHLDAQQGRMHDVLMES------PTMGRTAQFTETHFTAP 396

Query: 444 NHNIGDIIKVRITDVKISTL 463
               G II+ RIT  + + L
Sbjct: 397 QTE-GAIIRARITGQEATHL 415


>gi|88608641|ref|YP_506660.1| MiaB family tRNA modification protein [Neorickettsia sennetsu str.
           Miyayama]
 gi|88600810|gb|ABD46278.1| tRNA modification enzyme, MiaB family [Neorickettsia sennetsu str.
           Miyayama]
          Length = 429

 Score =  172 bits (437), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 135/460 (29%), Positives = 214/460 (46%), Gaps = 58/460 (12%)

Query: 25  QRFFVK--SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
            +F VK  ++GC++N Y+S  ++++        V   D  + I++NTC +  +A  +V  
Sbjct: 11  NKFMVKVITFGCRLNFYESDLIKNL--------VGIRDSRECIIINTCAVTNEAVRQVKQ 62

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
              +IR       K+     ++V GC  Q +                P  Y R+P + + 
Sbjct: 63  ---KIRKCH----KDEPSKKIIVVGCGPQLD----------------PHAYSRMPGVFKV 99

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYN-------------RKRGVTAFLTIQEGCDKF 189
               +++   +Y+ E K     I D                 RKR   AFL IQ GCD  
Sbjct: 100 LGNVEKLKAENYASEQKIAVADITDASETAFSSTMMPVVSAVRKR---AFLEIQNGCDHD 156

Query: 190 CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSD 249
           CTFC +   RG   S     +V E RK++  G+ E+ L G ++  + GK L G+      
Sbjct: 157 CTFCAITLARGKNRSSDAMTIVSEVRKIVAFGINEVVLTGVDITDY-GKDLFGKPALVYL 215

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
           L   L+++  L RLR ++    ++SD  I+       LMP+LHL +QSG   ILK M RR
Sbjct: 216 LKKILNDVPELKRLRLSSVDVSELSDDFIELFATEARLMPHLHLSIQSGDSIILKRMKRR 275

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369
           HT  +  +   +I +VRP+    +D IVGFP E+++ F  + +L+ ++       F +SP
Sbjct: 276 HTPEQVVEFHSKILAVRPETGFGADIIVGFPTESEEMFHNSYELIKRLAIPYLHVFPFSP 335

Query: 370 RLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV 429
           + GT  + ++ QVD  VK  R   L K  +E    FN   VG I  +++E+        V
Sbjct: 336 KKGTKAA-LMPQVDGVVKKGRARKLIKLGKENLQIFNTMQVGSIHNLVLERDN------V 388

Query: 430 GRSPWLQSVVLNSKNHNIGDIIKVRITDVK-ISTLYGELV 468
           GRS     V L S   +   II+ +IT      TL G+++
Sbjct: 389 GRSENFCLVRLGSAVSDDTGIIRAKITGCSDAETLSGQII 428


>gi|291531886|emb|CBK97471.1| SSU ribosomal protein S12P methylthiotransferase [Eubacterium
           siraeum 70/3]
          Length = 446

 Score =  172 bits (437), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 124/450 (27%), Positives = 213/450 (47%), Gaps = 26/450 (5%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N  D+  M       G++ VN    AD++++NTC   + A E+    +    + 
Sbjct: 11  SLGCPKNQCDAELMLAKIAKAGFKIVNEAGLADVVIINTCGFIQSAKEEAIEEIMEAISR 70

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
           KN  I +     ++V GC+A+   +++    P ++ VVG      + E++      +RVV
Sbjct: 71  KNDGINKK----IIVTGCLAERYQKQMDEEFPEIDAVVGIAKNDDIVEIINSVMLDRRVV 126

Query: 151 DTDYSVEDKFE--RLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
                +    E  +L      Y       A+L I +GC   C++C +P  RG   SR + 
Sbjct: 127 TFGDKLCHNMEGDKLQSTLPHY-------AYLRIADGCSNKCSYCAIPLIRGKMRSRKME 179

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYTT 267
            +++EA+K  +NGV E+ ++ Q+V A+   G+D  +K    DLL  L +I G+  +R   
Sbjct: 180 NIIEEAKKFAENGVKELVIVAQDVTAY---GIDLYKKYALPDLLKELCKIDGIKWIRLLY 236

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
            +P  M+D LI+     D ++ Y+ +P+Q  +  IL++M R       R++  ++R   P
Sbjct: 237 CYPERMTDELIETIKTEDKVLNYIDIPIQHCNKEILRNMYRGGDEQSLRELFAKLRREIP 296

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
            + + +  I GFPGET++ F    + V+ I + +   F YS    TP + M +QVDE  +
Sbjct: 297 GVVLRTTLITGFPGETEEQFSELAEFVNDIKFERLGCFAYSAEEDTPAAEMPDQVDEGER 356

Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVL--- 440
             R   +  +   +   +    VG   EV+ E   +      GRS    P +  ++    
Sbjct: 357 QRRADIITSEQEIRMGEYYAGMVGNTYEVVCEGFDRYSDMYFGRSMHFAPEIDGMIYFTS 416

Query: 441 --NSKNHNIGDIIKVRITDVKISTLYGELV 468
             +  +  IGD + V+ITDV  + L GE V
Sbjct: 417 AKDKSSLTIGDFVNVKITDVLENNLLGERV 446


>gi|315225262|ref|ZP_07867079.1| MiaB family RNA modification enzyme [Capnocytophaga ochracea F0287]
 gi|314944945|gb|EFS96977.1| MiaB family RNA modification enzyme [Capnocytophaga ochracea F0287]
          Length = 433

 Score =  172 bits (437), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 139/452 (30%), Positives = 220/452 (48%), Gaps = 47/452 (10%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC-HIREKAAEKVYSFLGRI 87
           V + GC  NVYDS  +     + G E V+     +++V+NTC  I     E + + L  +
Sbjct: 13  VVTLGCSKNVYDSEVLMGQLKAGGKEVVHEQK-GNIVVINTCGFINNAKEESINTILDYV 71

Query: 88  RNLKNSRIKEGGDL-LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           +       KE G +  V V GC+++    ++ +  P V+   G      LP LL      
Sbjct: 72  QQ------KEAGLVDKVFVMGCLSERYKPDLEKEIPDVDQYFGTS---ELPALL------ 116

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
            +V+  DY  E   ERL+     Y       A+L I EGCD+ C+FC +P  RG  +S  
Sbjct: 117 -KVLGADYKHELIGERLTTTPKNY-------AYLKISEGCDRPCSFCAIPLMRGAHLSTP 168

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGL--VRL 263
           +  +V EA KL   GV E+ L+ Q++  +   GLD  +K   +DLL +L +++G+  +R+
Sbjct: 169 IEALVTEAEKLAAKGVKELILIAQDITYY---GLDLYKKRALADLLSALVKVEGIEWIRI 225

Query: 264 RYT--TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
            Y   T  P D+ + +IK    +     YL +P+Q  SD IL SM R  T  +  +++ +
Sbjct: 226 HYAFPTGFPMDVLE-VIKTEPKI---CNYLDIPLQHISDSILASMKRGTTQAKTTKLLKK 281

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
            R   P++AI +  IVG+PGET++DF+   D V ++ + +   F YS    T    + + 
Sbjct: 282 FREAIPEMAIRTTLIVGYPGETEEDFQKLKDFVKEMRFDRLGCFTYSHEENTTAYTLEDD 341

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPW-----LQ 436
           V E VK  R   + +   +     N   VG+    LI++  KE    VGR+ +       
Sbjct: 342 VQEEVKLARANEIMEIQSQISWELNQEKVGKSFRCLIDR--KEGNYFVGRTEYDSPDVDN 399

Query: 437 SVVLNSKNH--NIGDIIKVRITDVKISTLYGE 466
            V++++K H   IGD   V+I D     LYGE
Sbjct: 400 EVLIDAKKHYVKIGDFTDVKIIDATDYDLYGE 431


>gi|262195718|ref|YP_003266927.1| MiaB-like tRNA modifying enzyme YliG [Haliangium ochraceum DSM
           14365]
 gi|262079065|gb|ACY15034.1| MiaB-like tRNA modifying enzyme YliG [Haliangium ochraceum DSM
           14365]
          Length = 486

 Score =  172 bits (437), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 135/461 (29%), Positives = 221/461 (47%), Gaps = 35/461 (7%)

Query: 21  CIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKV 80
            + P++ F  S GC  N  D+  M       GY  V   D+AD+IV+NTC   E A E+ 
Sbjct: 20  AVAPRKVFFVSLGCPKNRVDTEVMLGHAGGAGYRIVAEPDEADVIVVNTCGFIEAAKEES 79

Query: 81  YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140
              +     L+ +  K+     +VV GC++Q   EE+    P ++ ++G   + +L   L
Sbjct: 80  VDTI-----LEMAEYKKQNCEALVVTGCLSQRYPEELAAEIPEIDHLLGSADFRQLNSAL 134

Query: 141 ERARFGK------RVVDTDYSVEDKFERLS-IVDGGYNRKRG---VTAFLTIQEGCDKFC 190
             A   K      R   +   V    E  S + D    R R     +A+L I EGCD+ C
Sbjct: 135 GSALSAKAGASPARPARSSLPVIQVSETPSDLYDHTTPRMRSGALHSAYLKIAEGCDRPC 194

Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG---KGLDGEKCTF 247
           +FC++P  RG + SRS+  VV E   L+  G  EI L+ Q++  +      G DG +   
Sbjct: 195 SFCIIPKLRGPQRSRSIDSVVAETEALVAGGAREINLIAQDLTRYGADLPAGPDG-RPNL 253

Query: 248 SDLLYSLSEIKGL--VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
           + LL  ++ + G+  VRL YT  +P   +D LI+   +   ++ Y+ +P+Q   D +LK 
Sbjct: 254 AGLLRRVARVPGVRWVRLHYT--YPSAFTDELIEVIAEEPTVVKYIDVPLQHIDDEMLKR 311

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           M R H+A    +++ ++R     + + + FIVG PGETD+ F   +D V +  + +  +F
Sbjct: 312 MRRGHSARVTHELVAKLRQRIDGLVLRTTFIVGHPGETDESFGRLLDFVRETRFERVGAF 371

Query: 366 KYSPRLGTPGSNMLEQVDENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422
            YS   GT    +  +V   V   R   L+ LQ ++     + N   + + IEVL++   
Sbjct: 372 TYSIEPGTVSGMLPNRVPPEVAEARRDELMALQSEIHR---AHNQTLIDREIEVLVDGIS 428

Query: 423 KE-----KGKLVGRSPWLQ-SVVLNSKNHNIGDIIKVRITD 457
            E     +G+  G++P +  SV L       GDI++  +TD
Sbjct: 429 DESDLLLQGRWYGQAPEIDGSVYLADGTAQPGDIVRAVVTD 469


>gi|194755317|ref|XP_001959938.1| GF11786 [Drosophila ananassae]
 gi|190621236|gb|EDV36760.1| GF11786 [Drosophila ananassae]
          Length = 557

 Score =  172 bits (437), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 133/467 (28%), Positives = 224/467 (47%), Gaps = 45/467 (9%)

Query: 18  VDQCIVP--QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREK 75
           + + ++P  Q+ FVK++GC  N  DS  M     + GY +++  +DADL +LN+C ++  
Sbjct: 64  IHESVIPGTQKVFVKTWGCAHNNSDSEYMAGQLAAYGY-KLSGKEDADLWLLNSCTVKNP 122

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVN--VVVGPQTY 133
           + +         RN   S +K G    VVVAGCV Q        +S  +N   V+G Q  
Sbjct: 123 SEDT-------FRNEIESGMKNGKH--VVVAGCVPQGAP-----KSDYLNGLSVIGVQQI 168

Query: 134 YRLPELLERARFGK--RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCT 191
            R+ E++E    G   R++     V  +    + +     RK  +   ++I  GC   CT
Sbjct: 169 DRVVEVVEETLKGHSVRLLQNKKKVHGRRVAGAPLSLPKVRKNPLIEIISINSGCLNQCT 228

Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLL 251
           +C   + RG   S    +VV+ AR+    G CEI L  ++  A+ G+ +     +  +LL
Sbjct: 229 YCKTKHARGDLASYPPEEVVERARQSFAEGCCEIWLTSEDTGAY-GRDIGS---SLPELL 284

Query: 252 YSLSEI--------KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
           + L E+         G+    Y   H  +++  L         +  +LH+PVQSGSD +L
Sbjct: 285 WKLVEVIPEHCMLRVGMTNPPYILEHLEEVAKVLQHPR-----VYAFLHVPVQSGSDSVL 339

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
             M R +   ++  ++D +R   P + I++D I GFP ET+ DF  TM L  K  +   F
Sbjct: 340 GEMKREYCRKDFEHVVDFLRERVPGVTIATDIICGFPTETEADFEETMTLCAKYRFPSLF 399

Query: 364 SFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDAC--VGQIIEVLIEKH 421
             ++ PR GTP + M E++  N+  +R     K+L +   ++      VGQI  VL+ + 
Sbjct: 400 INQFFPRPGTPAAKM-ERIPANLVKKR----TKRLTDLFYTYEPYSGRVGQIYTVLVTEI 454

Query: 422 GKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
             +K   VG +   + V+L  + + +G  + VRIT     ++ GE++
Sbjct: 455 SHDKLHYVGHNKSYEQVLLPMRENLLGTRVHVRITSASKFSMVGEIL 501


>gi|158523241|ref|YP_001531111.1| MiaB-like tRNA modifying enzyme YliG [Desulfococcus oleovorans
           Hxd3]
 gi|238065334|sp|A9A0B5|RIMO_DESOH RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|158512067|gb|ABW69034.1| MiaB-like tRNA modifying enzyme YliG [Desulfococcus oleovorans
           Hxd3]
          Length = 440

 Score =  172 bits (437), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 130/462 (28%), Positives = 210/462 (45%), Gaps = 46/462 (9%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +  + S GC  N  DS  M   F ++G    +    AD++V+NTC   E A  +    + 
Sbjct: 2   KVHLTSLGCAKNQVDSELMLGAFAAEGLTVCDDPAGADVLVVNTCAFIEDAVNEAVDTIL 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +   K+    EG    ++V GC+ +  GEE+    P  +   G   Y+R+ E +     
Sbjct: 62  ALARYKS----EGSCRRLIVCGCLPERFGEELAGALPEADFFFGTGAYHRVIEAVA---- 113

Query: 146 GKRVVDTDYSVEDKFERLSI-------VDGGYNRKRGVTA---FLTIQEGCDKFCTFCVV 195
           GK         E    R ++       +    +R+   T    ++ I EGCD+ CT+C++
Sbjct: 114 GK---------ESTLSRCTLPPPDAVPMQAAADRRICATPHTVYVKIAEGCDRRCTYCII 164

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSL 254
           P  RG + SR  + +V EAR L+  G  E+ L+ Q   A+   G D     + + LL +L
Sbjct: 165 PRLRGRQRSRPPADIVVEARGLVAAGAKELVLVAQETTAY---GADLSPPVSLASLLMAL 221

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
           S+  G + +R    HP  M   LI+   + D L  Y  +PVQ  SDR+LK M RRHTA +
Sbjct: 222 SDAVGDIWVRVLYMHPDTMDPDLIRVMTERDNLCSYFDVPVQHASDRVLKRMGRRHTAAD 281

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
             ++ D IR   PD  + +  +VGFPGE   DF   +D +  + +    +F YS      
Sbjct: 282 LHRLFDDIRRADPDAVLRTTVLVGFPGEKPADFEKLLDFITGVAFDHLGAFIYSDDEALS 341

Query: 375 GSNMLEQVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR 431
              +   V       + +R++  Q  +  ++++     VG    VL+E+   E G   GR
Sbjct: 342 SHGLDGHVSSKTARHRYDRVMTAQIDISSRRLAKR---VGSREPVLVEEKA-EDGLFFGR 397

Query: 432 SPWLQSVVLN-------SKNHNIGDIIKVRITDVKISTLYGE 466
           + W Q+  ++       + ++  GD + VRIT      L GE
Sbjct: 398 A-WFQAPEVDGDVCFSGAGDYAPGDRVSVRITGASAYDLTGE 438


>gi|2501539|sp|Q49573|Y16R_MYCIO RecName: Full=Putative methylthiotransferase in 16S RNA 5'region
          Length = 438

 Score =  172 bits (437), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 117/445 (26%), Positives = 228/445 (51%), Gaps = 20/445 (4%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           F + + GC++N+++S  +++     G   V     AD+ ++NTC +  KA  K   ++ R
Sbjct: 10  FAIHTLGCKVNLFESNSIKNDLIMNGLVEVPFDSKADVYIINTCTVTNKADAKSRLYIKR 69

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGE--EILRRSPIVNVVVGPQTYYRLPELLERAR 144
                     +  D +++VAGC++Q   +  + L+ S  +        +  + E L++  
Sbjct: 70  AH-------VQNKDAIIIVAGCMSQVNKDLMDKLKISIQIGNKYKNSVFDLINEYLKKRE 122

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
              RV   +   E KFE+ +     +       AF+ IQ+GC+  C++C++P++RG + S
Sbjct: 123 RIYRV--ENILAEKKFEQTT---QDFIFLENTRAFIKIQDGCNFMCSYCIIPFSRGRQRS 177

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           + +  ++++ + L+     EI L G N   +    LD    TF DLL +++++ G  R+R
Sbjct: 178 QKMESILEKIKTLVSKXFKEIVLTGVNTAGY----LDENNNTFFDLLNNINKLDGDFRVR 233

Query: 265 YTTSHPRDMSDCLIK-AHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
            ++  P  ++D +I     +      + H+ +QSGSD +LK MNR++T  E+ +++ +I 
Sbjct: 234 ISSLEPFQINDEIIDLVTSNKKRFCQHWHICLQSGSDDVLKKMNRKYTTDEFYKLMQKIL 293

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           +  P    ++D+IVGFP ETD+D + ++D ++KI       F YS R  T  S+  + ++
Sbjct: 294 NKSPLTNFTTDYIVGFPTETDEDQKKSIDFLNKIKLYDMHIFPYSKRNNTRSSH-YKDIN 352

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
           ++ K +R+  + K     +       +G+  EVL EK  +++    G S     V++ S 
Sbjct: 353 DSTKKDRVKEITKLNYLNKKENLKKYIGKTCEVLFEKKKEDEKMWSGYSNEYCRVMVESG 412

Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468
           ++    ++KVRI  +   +L GE++
Sbjct: 413 DNLENKMLKVRIKKIFFDSLVGEII 437


>gi|299133921|ref|ZP_07027115.1| MiaB-like tRNA modifying enzyme YliG [Afipia sp. 1NLS2]
 gi|298591757|gb|EFI51958.1| MiaB-like tRNA modifying enzyme YliG [Afipia sp. 1NLS2]
          Length = 440

 Score =  172 bits (436), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 134/464 (28%), Positives = 219/464 (47%), Gaps = 49/464 (10%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
            P+  FV S GC   + DS R+     ++GYE     D AD++++NTC   + A ++   
Sbjct: 6   APKISFV-SLGCPKALVDSERIITRLRAEGYELARKHDGADIVIVNTCGFLDSAKQESLG 64

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +G         + E G   V+V GC+  AE E+I +  P V  + GPQ Y  + E + R
Sbjct: 65  AIGEA-------MAENGK--VIVTGCMG-AEPEQIEKEYPNVLSITGPQQYESVLEAVHR 114

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           A         D           +   G        A+L I EGC+  CTFC++P  RG  
Sbjct: 115 ALPPMHNPHLDL----------VPPQGIKLTPRHYAYLKISEGCNNRCTFCIIPKLRGDL 164

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLL 251
           +SR  + V+ EA KL+  GV E+ ++ Q+ +A           W+ + +   +  F DL 
Sbjct: 165 VSRPANDVLREAEKLVAAGVKELLVVSQDTSAYGIDIKYESSPWKDRDV---RARFLDLT 221

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
             L E+   VRL+Y   +P  + D +    G++   +PYL +P Q  +  +LK M R   
Sbjct: 222 RELGELGAWVRLQYVYPYPH-VDDVIALMGGNI---LPYLDIPFQHANPEVLKRMRRPAA 277

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
             +    I + R   PD+ + S FIVGFPGET+ +F+  +D +D+    +   FKY P  
Sbjct: 278 QDKTLARIHKWREQCPDLTLRSTFIVGFPGETESEFQDLLDWLDEAQIDRLGCFKYEPVA 337

Query: 372 GTPGSNMLEQVDENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE--KG 426
           G   + +   V + +K  R   L+  Q+K+  Q++      VG   +V+I++ G    KG
Sbjct: 338 GVTSNALDNPVPDEIKTARWNALMARQQKISAQRLKRK---VGTRQQVIIDEIGPSVAKG 394

Query: 427 KLVGRSPWLQ-SVVLNSKNH-NIGDIIKVRITDVKISTLYGELV 468
           +    +P +  SV ++S+    +GDI+  +I       L+G + 
Sbjct: 395 RSKADAPQIDGSVYVSSRRPLKVGDIVTAKIERADEYDLHGTVA 438


>gi|206560219|ref|YP_002230983.1| ribosomal protein S12 methylthiotransferase [Burkholderia
           cenocepacia J2315]
 gi|238065304|sp|B4EAF5|RIMO_BURCJ RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|198036260|emb|CAR52156.1| radical SAM superfamily protein [Burkholderia cenocepacia J2315]
          Length = 453

 Score =  172 bits (436), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 135/477 (28%), Positives = 220/477 (46%), Gaps = 61/477 (12%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  FV S GC   + DS ++     ++GYE   + D ADL+V+NTC   ++A ++    
Sbjct: 5   PKVGFV-SLGCPKALVDSEQIITQLRAEGYEISGTYDGADLVVVNTCGFIDEAVQESLDA 63

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCV---AQAEGEEILRR-SPIVNVVVGPQTYYRLPEL 139
           +G         + E G   V+V GC+   + A G  ++    P V  V GP     + + 
Sbjct: 64  IGEA-------LTENGK--VIVTGCLGAKSSASGSNLIEEVHPKVLAVTGPHAVGEVMQA 114

Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           +  +   K          D F  L +   G        A+L I EGC+  CTFC++P  R
Sbjct: 115 V-HSHLPKP--------HDPFVDL-VPAAGIKLTPRHYAYLKISEGCNHRCTFCIIPSMR 164

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFS 248
           G  +SR +++V+ EA  L  +GV E+ ++ Q+ +A           W GK +   K   +
Sbjct: 165 GDLVSRPVAEVMLEAENLFKSGVKELLVISQDTSAYGVDVKYRTGFWNGKPI---KTRMT 221

Query: 249 DLLYSLSEIKG----LVRLRYTTSHPRD------MSDCLIKAHGDLDVLMPYLHLPVQSG 298
           DL+ +L E+       VRL Y   +P        M++   K H     ++PYL +P Q  
Sbjct: 222 DLVAALGELAAQYGAWVRLHYVYPYPSVDEVIPLMAEGPFKGH-----VLPYLDVPFQHA 276

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
              +LK M R   A +  + + + R + PD+ I S FI GFPGET++ F   +D V +  
Sbjct: 277 HPEVLKRMKRPANAEKVLERVQKWREICPDLTIRSTFIAGFPGETEEQFETLLDFVREAE 336

Query: 359 YAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI 418
             +   F YSP  G   +++   + + V+ ER     +   E         VG+ ++VLI
Sbjct: 337 LDRVGCFAYSPVEGATANDLDGALPDEVREERRARFMEVAEEVSAHRMQRKVGKTLKVLI 396

Query: 419 EKHGKEK--GKLVGRSPWLQSVVL------NSKNHNIGDIIKVRITDVKISTLYGEL 467
           ++ G+E   G+    +P +  VV        SK + +GD + V+IT      L+GE+
Sbjct: 397 DEVGEEGGIGRTAADAPEIDGVVYVEPAAKASKRYKVGDFVSVKITGADGHDLWGEV 453


>gi|313112838|ref|ZP_07798485.1| MiaB-like tRNA modifying enzyme YliG [Faecalibacterium cf.
           prausnitzii KLE1255]
 gi|310624908|gb|EFQ08216.1| MiaB-like tRNA modifying enzyme YliG [Faecalibacterium cf.
           prausnitzii KLE1255]
          Length = 441

 Score =  172 bits (436), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 131/448 (29%), Positives = 218/448 (48%), Gaps = 30/448 (6%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N  D   M  +  S G+E V  + +AD+I++NTC   E A  +    +    + 
Sbjct: 7   SLGCPKNQVDLDVMVHILLSAGHETVADLAEADVILVNTCGFIESAKTEAIENILEACSY 66

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
           K    ++  +L V+V GC+A+    +I    P V+ VVG  +   +  ++ R   G+  +
Sbjct: 67  K----QQNPELKVIVTGCLAERYRSQIEEEIPEVDAVVGCASNKAIDTIVARLFHGEDHL 122

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTA---FLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
           ++ Y  +  F        G  R  G  A   +L I EGC+  C +C +P  RG   SR +
Sbjct: 123 ES-YGAKKDFPL------GGKRVIGTPAHYAYLKIAEGCNNRCHYCAIPGIRGPLHSRDM 175

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYT 266
           +  V EAR L   GV E+ ++ Q+  A+   G D G+  +  +LL  L+++ GL  +R  
Sbjct: 176 ADCVAEARWLAGEGVKELIVVAQDPTAY---GEDWGKPGSICELLDKLNKVPGLEWIRIM 232

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
            ++P  ++D  I A    + ++PYL LP+Q  +D ILK+MNRR    E  ++I ++R   
Sbjct: 233 YAYPERITDEFIAAMKRNEKVVPYLDLPIQHCNDTILKNMNRRSNRAELLEVIGKLRREI 292

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           P I + +  I GFPGET++ F    + V ++ + +   F YS    T  + M  Q+++ V
Sbjct: 293 PGITLRTTLIAGFPGETEEQFEDLCNFVKEVKFDRLGCFAYSAEENTVAAKMDGQIEQEV 352

Query: 387 K---AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG----KLVGRSPWLQSVV 439
           K   AE ++ +Q  +  Q+ +     VGQ + VL +   +E G    +  G +P +   V
Sbjct: 353 KDKRAELVMQIQTGIMAQKQAEK---VGQTVHVLCDGIDEESGLYLCRTTGDAPEVDGNV 409

Query: 440 LNSKNHNI--GDIIKVRITDVKISTLYG 465
             S    +  G    V + D  +  LYG
Sbjct: 410 CVSSEEPLYPGQFYDVLVDDSDLYDLYG 437


>gi|147919729|ref|YP_686525.1| putative 2-methylthioadenine synthetase [uncultured methanogenic
           archaeon RC-I]
 gi|110621921|emb|CAJ37199.1| putative 2-methylthioadenine synthetase [uncultured methanogenic
           archaeon RC-I]
          Length = 404

 Score =  172 bits (436), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 137/445 (30%), Positives = 205/445 (46%), Gaps = 52/445 (11%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R ++++YGC  N  DS  + D   + G    +S ++AD+IV+NTC +    A  +   + 
Sbjct: 4   RVYIETYGCTANEADSAGIRDAVLASGGAIASSPEEADVIVVNTCAVTGHTANSMLRAVS 63

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R    +           V+VAGC+A AE   +         V GP +   +  L  R   
Sbjct: 64  RFPGKR-----------VLVAGCLAVAEPGRLKG----YEFVDGPGSLPVVRALGLRPEA 108

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G  +  T                      G TA + I EGC+  C++C+V   RG   S 
Sbjct: 109 GLSIAMT----------------------GRTATIKIAEGCNGQCSYCIVRLVRGRIRST 146

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
               +V+ AR+ I  G  E+ L  Q+  A+   GLD        L+ S++ + G  ++R 
Sbjct: 147 PAPDIVEAARRAIAEGASELFLTSQDSGAY---GLD-TGVRLPTLIRSIASLPGNFKVRI 202

Query: 266 TTSHPRDMSDCLIKAHGDLDVL-MP----YLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
              +P  ++D L      +DVL  P    + H+PVQSGSDRILK M R +T  EY  II 
Sbjct: 203 GMMNPFSIADILPDM---VDVLNHPKVYRFAHIPVQSGSDRILKLMQRPYTEQEYSAIIS 259

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           R+R+  P I  S+D+IVGFP ET+ DFR T++ +      +    ++SPR GTP + M  
Sbjct: 260 RLRAGVPGITFSTDYIVGFPTETEADFRLTLEDLRTNRPLKVNITRFSPRPGTPAAAM-P 318

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440
            V E  K ER   L     E         VG    VL+ + GK  G ++ R P    VV+
Sbjct: 319 DVLERTKKERSRMLTALHHEVTSHDLKEAVGSRRSVLVSEKGK-PGTVIARDPSYNMVVI 377

Query: 441 NSKNHNIGDIIKVRITDVKISTLYG 465
             ++  +G +  V I+  K + L G
Sbjct: 378 E-EDLPLGTVANVEISAAKTTYLIG 401


>gi|283856338|ref|YP_162542.2| 30S ribosomal protein S12 methylthiotransferase [Zymomonas mobilis
           subsp. mobilis ZM4]
 gi|238055318|sp|Q5NPC9|RIMO_ZYMMO RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|6685125|gb|AAF23796.1|AF213822_11 hypothetical protein [Zymomonas mobilis subsp. mobilis ZM4]
 gi|283775335|gb|AAV89431.2| MiaB-like tRNA modifying enzyme YliG [Zymomonas mobilis subsp.
           mobilis ZM4]
          Length = 443

 Score =  172 bits (436), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 126/451 (27%), Positives = 209/451 (46%), Gaps = 42/451 (9%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC   + DS R+     S+GY   +  D+AD++++NTC   + A E+    +G     
Sbjct: 15  SLGCPKALVDSERILTKLRSEGYNLSSQYDEADVVLVNTCGFIDSAKEESLDAIGEAMA- 73

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
           +N R        V+V GC+   E   I  R P +  + G Q Y    E++        + 
Sbjct: 74  ENGR--------VIVTGCLGN-EANRIRERFPDILAITGAQQY---EEVVSAVHDAAPIE 121

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
            + Y      + L +    Y+       +L I EGC+  C+FC++P  RG  +SR    +
Sbjct: 122 ASPYVDLVPEQGLKLTPRHYS-------YLKISEGCNHRCSFCIIPSLRGDLVSRRADAI 174

Query: 211 VDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYSLSEIKG 259
           + EA KL+  G  E+ ++GQ+ +A           W+ + +   K   +DL   L E+  
Sbjct: 175 LREAEKLVAAGTKELLVIGQDSSAYGVDLRHQEYRWKDRMV---KADLTDLARGLGELGA 231

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
            VRL Y   +P   +   + A G   +++PYL +P Q  S  +LK M R     +    +
Sbjct: 232 WVRLHYVYPYPHVDNLIPLMAEG---LILPYLDIPFQHASPSVLKRMKRPANEVKILDRL 288

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            + R + PDIA+ S F+VGFPGET+ DF+  +D +D+    +  +F++    G   +   
Sbjct: 289 TKWREIVPDIALRSSFVVGFPGETEQDFQYLLDWLDEAQLDRVGAFRFEAVEGAAANAFD 348

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK---HGKEKGKLVGRSPWLQ 436
             V E VK ER   L +K  +   +   A +G+ I  +I++    G   G+    +P + 
Sbjct: 349 GAVPEEVKNERYQRLMEKAAQISEAKLQAKIGRDIATIIDRTDGEGGASGRSYADAPEID 408

Query: 437 SVV--LNSKNHNIGDIIKVRITDVKISTLYG 465
             V   ++ N  IGDI+ VR+ D     L+G
Sbjct: 409 GEVHLRDADNLKIGDIVTVRVEDADEHDLFG 439


>gi|313201433|ref|YP_004040091.1| miab-like tRNA modifying enzyme ylig [Methylovorus sp. MP688]
 gi|312440749|gb|ADQ84855.1| MiaB-like tRNA modifying enzyme YliG [Methylovorus sp. MP688]
          Length = 441

 Score =  172 bits (436), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 132/461 (28%), Positives = 224/461 (48%), Gaps = 48/461 (10%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           +P+  FV S GC     DS R+     ++GY    S  D+DL+V+NTC   + A ++   
Sbjct: 5   IPKVGFV-SLGCPKASSDSERILTQLRAEGYSISGSYQDSDLVVVNTCGFIDSAVQESLD 63

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +G         + E G   V+V GC+  A+ + +    P V  V GP   + L E++  
Sbjct: 64  AIGEA-------LAENGK--VIVTGCLG-AKADVVQNAHPSVLAVTGP---HALEEVMTA 110

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
                      Y+     + + +    Y       A+L I EGC+  C+FC++P  RG  
Sbjct: 111 VHANLPKPHDPYTDLVPPQGVRLTPKHY-------AYLKISEGCNHRCSFCIIPSMRGDL 163

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLL 251
           +SR + +V+ EA  L++ GV E+ ++ Q+ +A           W G+ +   K   ++L 
Sbjct: 164 VSRPIGEVMQEAENLVNAGVSELLVISQDTSAYGVDVKYRTGFWNGRPI---KTRMTELA 220

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
             L ++   VR+ Y   +P    D +I    D  +++PYL +P Q  S RILK+M R  +
Sbjct: 221 RGLGDLGVWVRMHYVYPYPH--VDEIIPLMAD-GLILPYLDVPFQHASPRILKAMKRPAS 277

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
           +      I   R + PDI I S FI GFPGET++DF+  +D + +    +   F YS   
Sbjct: 278 SENNLARIKAWRDICPDITIRSTFITGFPGETEEDFQMLLDFLQEAELDRVGCFAYSAVD 337

Query: 372 GTPGSNMLEQVDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEK-G 426
           G   + + + V E +K ERL   + +Q+ +  +++      VG++  VL+ E +G E   
Sbjct: 338 GAAANALPDAVPEELKQERLARFMEVQEAISAEKLQRR---VGRLETVLVDEVNGDEAIA 394

Query: 427 KLVGRSPWLQSVV--LNSKNHNIGDIIKVRITDVKISTLYG 465
           + +  +P +  VV   +++  N GD+++V+ITD     L+G
Sbjct: 395 RTMSDAPEIDGVVYLADAEGLNPGDLVEVQITDADGHDLWG 435


>gi|312384872|gb|EFR29498.1| hypothetical protein AND_01451 [Anopheles darlingi]
          Length = 526

 Score =  172 bits (436), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 131/471 (27%), Positives = 220/471 (46%), Gaps = 56/471 (11%)

Query: 20  QCIVP--QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA 77
           + ++P  Q+ ++K++GC  N  D+  M       GY   +    ADL VLN+C ++  + 
Sbjct: 59  ESVIPETQQIYMKTWGCAHNTSDTEYMAGQLAQYGYNLTSDKKAADLWVLNSCTVKNPSE 118

Query: 78  EKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVN--VVVGPQTYYR 135
           +         RN   +  + G    VVVAGCV QA       RS  ++   VVG Q   R
Sbjct: 119 DT-------FRNEIEAAHRAGKH--VVVAGCVPQAAP-----RSDYLHGLSVVGVQQIDR 164

Query: 136 LPELLERARFGKRV-------VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
           + E++E    G  V       V+       K     +      RK  +   + I  GC  
Sbjct: 165 VAEVVEETLKGHSVRLLQAKKVNGRKVAGPKLALPKV------RKNPLIEVIPINSGCLN 218

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS 248
            CT+C   + R   +S  + ++V+ A+++ + GVCEI L  ++   + G+ +D    +  
Sbjct: 219 SCTYCKTKFARADLVSYPVQEIVERAQQVFEEGVCEIWLTSEDTGTY-GRDIDS---SLP 274

Query: 249 DLLYSLSEI--------KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300
           +LL+ L E+         G+    Y   H  +M+  L  AH  +     +LH+PVQSGSD
Sbjct: 275 ELLWKLVEVIPEGCMMRLGMTNPPYILEHLEEMAKVL--AHPRV---YSFLHIPVQSGSD 329

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
            IL  M R +   E+ +++D +R   P I I++D I GFPGET+ DF+ T+ L  K  + 
Sbjct: 330 TILGEMKREYCVQEFERVVDFLREKVPGITIATDIICGFPGETETDFQGTVALCKKYEFP 389

Query: 361 QAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLRE---QQVSFNDACVGQIIEVL 417
             F  ++ PR GTP + M     E V A  +    K+L +       +     G I  VL
Sbjct: 390 SLFINQFFPRPGTPAAKM-----ERVPANEVKTRTKRLTDLFHSYEPYKKYTPGTIQTVL 444

Query: 418 IEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           + +   ++   VG + + + V+L   N+ +G  ++V IT     +++G+++
Sbjct: 445 VTEISHDRKHYVGHNKFYEQVLLPMHNNLLGKQVEVEITGCTKFSMFGKVL 495


>gi|256822298|ref|YP_003146261.1| MiaB-like tRNA modifying enzyme YliG [Kangiella koreensis DSM
           16069]
 gi|256795837|gb|ACV26493.1| MiaB-like tRNA modifying enzyme YliG [Kangiella koreensis DSM
           16069]
          Length = 455

 Score =  172 bits (436), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 125/405 (30%), Positives = 200/405 (49%), Gaps = 42/405 (10%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC   + DS R+     ++GY+ V + +DAD++V+NTC   + A ++    +G   N 
Sbjct: 24  SLGCPKALVDSERILTQLRTEGYDIVPTYEDADIVVVNTCGFIDAAKQESLEAIGEALN- 82

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
                 E G   V+V GC+  A+  +I    P V  V GP  Y ++   +      K   
Sbjct: 83  ------ENGK--VIVTGCLG-AQENDIREIHPGVLSVSGPAQYEQVLTAVHEHLPPK--- 130

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
               S  D F  L    G     R   A+L I EGC+  C+FC++P  RG  +SR + QV
Sbjct: 131 ----SEHDPFVDLVPPQGIKLTPRHY-AYLKISEGCNHKCSFCIIPSMRGKLVSRPVGQV 185

Query: 211 VDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYSLSEIKG 259
           +DEA +L+  G  E+ ++ Q+ +A           W+G+ +   K    D+  +L +++ 
Sbjct: 186 LDEAERLVKAGTKELLVVSQDTSAYGVDKKYAMDFWQGQPV---KTRMKDMCEALGQLEN 242

Query: 260 L-VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           + VRL Y   +P       + A G +   +PYL +P Q  S RILK M R        + 
Sbjct: 243 VWVRLHYVYPYPHVDDIIPLMAEGKI---LPYLDIPFQHASPRILKLMKRPGDINNVLER 299

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           I + R + PDI I S FIVGFPGET+++F+  +D ++     +   FKYSP  G   + +
Sbjct: 300 IQKWRDICPDITIRSTFIVGFPGETEEEFQELLDFLEVAQLDRVGCFKYSPVEGASANEL 359

Query: 379 LEQVDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEK 420
              V E VK ERL   + +Q+ +  +++      VG+I+ VL+++
Sbjct: 360 PAPVPEKVKEERLARFMAVQEAISAKKLQQK---VGKIMTVLVDE 401


>gi|12003025|gb|AAG43441.1|AF186181_1 slr0082 [Synechococcus sp. PCC 7002]
          Length = 317

 Score =  172 bits (436), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 101/304 (33%), Positives = 164/304 (53%), Gaps = 9/304 (2%)

Query: 170 YNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLG 229
           Y       A+L + EGCD  C FC++P+ RG + SR +  +V EA++L + GV EI L+ 
Sbjct: 16  YRTTNEAVAYLRVAEGCDYRCAFCIIPHLRGDQRSRPIESIVAEAKQLAEQGVQEIILIS 75

Query: 230 QNVNAWRGKGLDGEKCTFSDLLYSLSEIK-GLVRLRYTTSHPRDMSDCLIKAHGDLDVLM 288
           Q    + GK + G K   ++LL +L  +    +R+ Y  ++P  ++  +I A  D   ++
Sbjct: 76  QITTNY-GKDIYG-KPKLAELLRALGGVDVPWIRIHY--AYPTGLTPEVIAAMRDTPNVI 131

Query: 289 PYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFR 348
           PYL LP+Q     IL++MNR        +II+ ++   PD  + + FIVGFPGET++ F+
Sbjct: 132 PYLDLPLQHSHPDILRAMNRPWQGRVNDRIIEDLKKALPDAILRTTFIVGFPGETEEHFQ 191

Query: 349 ATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDA 408
             +D V +  +     F +S   GTP  ++  Q+ ++VK  R   L +  +      N+ 
Sbjct: 192 HLVDFVKRHEFDHVGVFTFSAEEGTPAIDLPNQLPQSVKDSRRDALMEIQQPIAARRNEL 251

Query: 409 CVGQIIEVLIEKHGKEKGKLVGRSPWLQS----VVLNSKNHNIGDIIKVRITDVKISTLY 464
           CVGQ ++VLIE+     G+L+GRSP        +V  +   ++G I+ V+IT   I  LY
Sbjct: 252 CVGQTVDVLIEQENPATGELIGRSPRFAPDVDGLVYVTGEASLGSIVPVQITAADIYDLY 311

Query: 465 GELV 468
           G +V
Sbjct: 312 GTIV 315


>gi|253999410|ref|YP_003051473.1| 30S ribosomal protein S12 methylthiotransferase [Methylovorus sp.
           SIP3-4]
 gi|253986089|gb|ACT50946.1| MiaB-like tRNA modifying enzyme YliG [Methylovorus sp. SIP3-4]
          Length = 452

 Score =  172 bits (436), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 136/476 (28%), Positives = 231/476 (48%), Gaps = 53/476 (11%)

Query: 13  MVSQIVDQCI-----VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVL 67
           M +QI+ + I     +P+  FV S GC     DS R+     ++GY    S  D+DL+V+
Sbjct: 1   MSAQILIENIRMNQSIPKVGFV-SLGCPKASSDSERILTQLRAEGYSISGSYQDSDLVVV 59

Query: 68  NTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVV 127
           NTC   + A ++    +G         + E G   V+V GC+  A+ + +    P V  V
Sbjct: 60  NTCGFIDSAVQESLDAIGE-------ALAENGK--VIVTGCLG-AKADVVQNAHPSVLAV 109

Query: 128 VGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCD 187
            GP   + L E++             Y+     + + +    Y       A+L I EGC+
Sbjct: 110 TGP---HALEEVMTAVHANLPKPHDPYTDLVPPQGVRLTPKHY-------AYLKISEGCN 159

Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WR 236
             C+FC++P  RG  +SR + +V+ EA  L++ GV E+ ++ Q+ +A           W 
Sbjct: 160 HRCSFCIIPSMRGDLVSRPIGEVMQEAENLVNAGVSELLVISQDTSAYGVDVKYRTGFWN 219

Query: 237 GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQ 296
           G+ +   K   ++L   L ++   VR+ Y   +P    D +I    D  +++PYL +P Q
Sbjct: 220 GRPI---KTRMTELARGLGDLGVWVRMHYVYPYPH--VDEIIPLMAD-GLILPYLDVPFQ 273

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
             S RILK+M R  ++      I   R + PDI I S FI GFPGET++DF+  +D + +
Sbjct: 274 HASPRILKAMKRPASSENNLARIKAWRDICPDITIRSTFITGFPGETEEDFQMLLDFLQE 333

Query: 357 IGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERL---LCLQKKLREQQVSFNDACVGQI 413
               +   F YS   G   + + + V E +K ERL   + +Q+ +  +++      VG++
Sbjct: 334 AELDRVGCFAYSAVDGAAANALPDAVPEELKQERLARFMEVQEAISAEKLQRR---VGRL 390

Query: 414 IEVLI-EKHGKEK-GKLVGRSPWLQSVV--LNSKNHNIGDIIKVRITDVKISTLYG 465
             VL+ E +G E   + +  +P +  VV   +++  N GD+++V+ITD     L+G
Sbjct: 391 ETVLVDEVNGDEAIARTMSDAPEIDGVVYLADAEGLNPGDLVEVQITDADGHDLWG 446


>gi|145352560|ref|XP_001420609.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144580844|gb|ABO98902.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 450

 Score =  172 bits (436), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 126/441 (28%), Positives = 214/441 (48%), Gaps = 44/441 (9%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N  D   M       G++  +  + AD IV+N+C   E A  +    +     L
Sbjct: 3   SLGCPKNTVDGEVMLGDLHGAGFDVTDDHESADAIVINSCGFVEDAKNESVEAILEASQL 62

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
            N   K      ++V GC+AQ    ++    P  +V+VG + Y  LP+ +     G   V
Sbjct: 63  ANGSKK------IIVTGCLAQRYANDLANELPEADVIVGFENYANLPKTVG----GLLGV 112

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGV---------TAFLTIQEGCDKFCTFCVVPYTRGI 201
           +T+  +  +  R+ +       +  +         TA+L + EGCD  CTFC +P  RG 
Sbjct: 113 ETNGLIAPQQARVQVGGASPPFREEIKRLRITPRHTAYLRVAEGCDHKCTFCAIPSFRGR 172

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-------RGKGLDGEKCTFSDLLYSL 254
             S+    ++DEA+ L D+GV E+ L+ ++ N W        G+GL       ++LLY+L
Sbjct: 173 FRSKPWQSIIDEAKALADSGVRELNLIAEDTNQWGIDLRASDGRGL-------AELLYAL 225

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN---RRHT 311
           +E++G+  +R   ++P   SD LI+A  D+  +  Y+ +P+Q  ++  L  MN   R+HT
Sbjct: 226 AEVEGIEWMRILYAYPSYFSDELIRAIADVPQVCKYIDIPLQHITNLSLLRMNRPPRQHT 285

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
                ++ DRI    PD+A+ + FI GFPGET+++    M       + +  +F YS   
Sbjct: 286 EDLLYKLRDRI----PDLALRTTFISGFPGETEEEHEELMQFCRDFKFERLGAFAYSEED 341

Query: 372 GTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR 431
           GTP     +QV E ++A R   L  + +E    F  + VG+ ++VLI+   ++    +GR
Sbjct: 342 GTPAMEYPDQVPEEIRAIRRDQLVSQQQEISEDFAMSRVGKDVDVLIDNWDEDMQAFIGR 401

Query: 432 S----PWLQSVVLNSKNHNIG 448
           +    P +  VV  +++ + G
Sbjct: 402 TTLEAPDIDPVVFVTEDKSKG 422


>gi|329847307|ref|ZP_08262335.1| RNA modification enzyme, MiaB family protein [Asticcacaulis
           biprosthecum C19]
 gi|328842370|gb|EGF91939.1| RNA modification enzyme, MiaB family protein [Asticcacaulis
           biprosthecum C19]
          Length = 455

 Score =  172 bits (436), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 134/459 (29%), Positives = 210/459 (45%), Gaps = 56/459 (12%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC   + DS R+      +GY+   S   AD+IV+NTC   + A E+  + +G     
Sbjct: 5   SLGCPKALVDSERILTRLKGEGYDTSASYAGADVIVVNTCGFLDSAKEESLNAIGEA--- 61

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               + E G   V+V GC+   E   I  R P V  V G   Y               V+
Sbjct: 62  ----LAENGK--VIVTGCMGGDEAM-IRARFPNVAAVTGAHQY-------------DAVM 101

Query: 151 DTDYSV----EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           D  +++     D F+ L + D G        A+L I EGCD  C+FC++P  RG   SR 
Sbjct: 102 DAVHNIVPPKPDPFKSL-VPDEGVRLTPKHYAYLKISEGCDHRCSFCIIPTLRGDLASRP 160

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYSLS 255
           +++V+ EA  L   GV E+ ++ Q+ +A           WRG+       +F DL   L 
Sbjct: 161 VAEVLREAETLAKAGVKELLVVSQDTSAYGLDIRYAQSEWRGQNW---AASFEDLSRGLG 217

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
           E+   VR+ Y   +P       + A G +   +PYL +P Q  S +ILK+M R     + 
Sbjct: 218 ELGIWVRMHYVYPYPHVSGVLPLMAEGKI---LPYLDIPFQHASPKILKAMKRPGNQDKT 274

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
            Q I+  R + PD+ + S F+VGFPGET+ DF   +D ++     +  +F Y    G P 
Sbjct: 275 LQRIESWREICPDLTLRSTFVVGFPGETEADFNLLLDWMEAAQIDRVGAFAYENVEGAPA 334

Query: 376 SNMLEQVDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEK---HGKEKGKLV 429
             + + V E VK +RL   + +  ++  Q+++   A VG+I +VL+++    G    +  
Sbjct: 335 KLLPDHVPEEVKQDRLARFMAVASRISAQKLA---AKVGRIEDVLVDEIRSDGVAVARTR 391

Query: 430 GRSPWLQSVVL--NSKNHNIGDIIKVRITDVKISTLYGE 466
           G +P +   +          GD  K R+T      L+GE
Sbjct: 392 GDAPEIDGHIYLKGFTGLKAGDYAKARVTRADAYDLWGE 430


>gi|31790361|gb|AAP58618.1| putative 2-methylthioadenine synthetase [uncultured Acidobacteria
           bacterium]
          Length = 450

 Score =  172 bits (435), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 129/463 (27%), Positives = 218/463 (47%), Gaps = 44/463 (9%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ DS  M     + GYE      +AD +V+NTC   + A ++    +     L
Sbjct: 8   SLGCPKNLVDSEVMMGQLKANGYELTADASEADTVVVNTCGFIDSAKQESIDTI-----L 62

Query: 91  KNSRIKEGGDLL-VVVAGCVAQAEGEEILRRSPIVNVVVG------------PQTYYR-L 136
           + +R+K  G    ++VAGC+ +   +E+    P V+  +G            P T  R L
Sbjct: 63  EAARLKSDGKATRIIVAGCLVERYRDELKASIPEVDAFIGTSQINDILSVCDPHTNTRAL 122

Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
           P +      G +     Y  ++   R+      Y       AF+ I EGCD+ C FC +P
Sbjct: 123 PVI----PLGNQ--SATYLYDESTPRVLATPSHY-------AFIKIAEGCDRPCAFCFIP 169

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256
             RG   SR    +V EA++L + GV E+ L+ Q+ + + G+ L G+    + LL  LS 
Sbjct: 170 QMRGHFRSRRFGSIVAEAQQLAEEGVKELILVAQDSSRY-GEDL-GKDDALAHLLRELSH 227

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
             G+  +R   ++P  +SD  ++   +    + YL +P+Q  S  +LK M R        
Sbjct: 228 TDGIEWVRVMYTYPTHISDGFLEVLAEEAKAVKYLDMPLQHASQNVLKLMKRGGNRASLE 287

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
           ++I R+R   P+IA+ + FI GFPGETD+DF   +  V  + + +   F YS   GTP  
Sbjct: 288 RLIKRVRDRVPEIAVRTTFITGFPGETDEDFEELLTFVKNVEFDRVGVFTYSDEEGTPAY 347

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-----KGKLVGR 431
           ++  +V+  +  +R   L K+  +     + A +G+ + V+ E    E     +G++  +
Sbjct: 348 DLPNKVEPKIAKQRRARLMKEQAKIAKRKHKAMIGRQVRVIFEGESSESELLWQGRMETQ 407

Query: 432 SPWLQSVVL-NSKNHNI----GDIIKVRITDVKISTLYGELVV 469
           +P +   VL N    +     G+++ V IT+ +   L G +VV
Sbjct: 408 APDIDGCVLINDAPEDFAPMPGEMLHVMITEAQEYDLVGRIVV 450


>gi|319408559|emb|CBI82212.1| putative enzyme [Bartonella schoenbuchensis R1]
          Length = 437

 Score =  172 bits (435), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 140/461 (30%), Positives = 216/461 (46%), Gaps = 47/461 (10%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
            P+  FV S GC   + DS R+     S+GYE  +    ADL+++NTC   + A      
Sbjct: 3   APRISFV-SLGCPKALVDSERIITSLRSEGYEISHKHQGADLVIVNTCGFLDSA------ 55

Query: 83  FLGRIRNLKN--SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140
              R  +L N    IKE G   V+V GC+  AE E I +  P V  + GPQ Y  + + +
Sbjct: 56  ---RTESLANIEKAIKENGK--VIVTGCLG-AEPEVIRQAHPSVLAITGPQAYENVIQAV 109

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
                   VV     V D F  L    G     R   A+L I EGC   C+FC++P  RG
Sbjct: 110 HT------VVP---PVHDPFVDLVPPQGIRLTPRHY-AYLKISEGCSNRCSFCIIPALRG 159

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSD 249
             +SR +  ++ EA KL+  GV E+ ++ Q+ +A           W+ + +   K  F D
Sbjct: 160 NLVSRPIGDILREAEKLVQAGVKELLIISQDTSAYGIDIKYAESSWKDRTI---KTKFLD 216

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
           L   L ++   VR+ Y   +P   +   + A G +   +PYL +P Q  S  +L++M R 
Sbjct: 217 LCRELGDMGVWVRMHYVYPYPHVDAVIELMAAGKI---LPYLDIPFQHASPTVLRNMKRP 273

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369
               +  + I+  R + PD+ + S FIVGFPGET++DF   ++ +++    +A  FKY  
Sbjct: 274 AHMEKTNRRIEEWRKICPDLTLRSTFIVGFPGETNEDFEMLLEWLEETKIERAGCFKYEA 333

Query: 370 RLGTPGSNM-LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGK-EKG 426
             G   +++ L  V E VK  R      K ++         +GQ +++LI E  GK  KG
Sbjct: 334 VKGAAANDLELGNVAEEVKESRWHRFMAKQQQISARLLKKKIGQRLQILIDESQGKVAKG 393

Query: 427 KLVGRSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYG 465
           +    +P +  VV  S    +  G+ + V+I       LYG
Sbjct: 394 RSKYDAPEIDGVVHISSRRPLRSGEFVTVKIEQSDAYDLYG 434


>gi|212551080|ref|YP_002309397.1| Fe-S oxidoreductase [Candidatus Azobacteroides pseudotrichonymphae
           genomovar. CFP2]
 gi|212549318|dbj|BAG83986.1| putative Fe-S oxidoreductase [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
          Length = 433

 Score =  172 bits (435), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 115/380 (30%), Positives = 198/380 (52%), Gaps = 23/380 (6%)

Query: 21  CIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKV 80
           C   ++    + GC++N  ++  + + F   G + V   ++ D+++++TC + E+A +K 
Sbjct: 6   CFHDKKAAYYTLGCKLNYAETSAIRECFLQVGIKTVQGEENPDIVIISTCSVTEEANKKC 65

Query: 81  YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140
            + + R+R       ++     +VV GC AQ   EEI++   I ++VVG +    L + +
Sbjct: 66  RNLIRRVR-------RKYSSAFLVVTGCYAQLCSEEIIKIEGI-DLVVGLEGKRNLSKYV 117

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
            R   G  ++ +      +F      DG   R R   +FL IQ+GCD  C++C +P  RG
Sbjct: 118 LRGERG--IIVSPMMESQEFTPACSYDG---RTR---SFLKIQDGCDYTCSYCTIPLARG 169

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
              +R +S +V  + +L   GV EI L G N+  + GK   GE   F DLL  L +++ +
Sbjct: 170 KSRNRKISDLVRNSMQLGAKGVKEIVLTGVNIGDF-GKS-TGE--NFLDLLRDLDKVENI 225

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R R ++  P  +SD +I+     D  +P+ H+P+QSGSD +L+ MNR++     R  I+
Sbjct: 226 SRFRISSIEPNLLSDEIIEFVAFSDRFVPHFHIPLQSGSDAVLRLMNRKYDIVLLRSKIE 285

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           +I+++  D  I  D IVG  GETD+ FR +   ++ + ++Q   F YS R  T   N+ +
Sbjct: 286 KIKTLMTDAFIGFDIIVGMRGETDEYFRESQKFLESLPFSQLHVFTYSERPATMALNINQ 345

Query: 381 QVDENVKAER---LLCLQKK 397
            +    + ER   LL L K+
Sbjct: 346 MITLKKRQERRKELLALSKR 365


>gi|325290323|ref|YP_004266504.1| SSU ribosomal protein S12P methylthiotransferase [Syntrophobotulus
           glycolicus DSM 8271]
 gi|324965724|gb|ADY56503.1| SSU ribosomal protein S12P methylthiotransferase [Syntrophobotulus
           glycolicus DSM 8271]
          Length = 442

 Score =  172 bits (435), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 122/453 (26%), Positives = 228/453 (50%), Gaps = 27/453 (5%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++  V + GC  N  DS  +   F  + Y+ V+    A +I++NTC   ++A ++  + L
Sbjct: 3   KKVAVINLGCPKNQVDSEVLAG-FLVRKYQLVDEPAKAHIIIVNTCTFIDEAKQESINEL 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            ++   K + I E     V+  GC+AQ  G+E++   P +++V+G      + + +E A+
Sbjct: 62  CQMVEYKKNGICEK----VIATGCMAQRYGKELIEEIPELDMVLGDGNLANILDHIEEAK 117

Query: 145 FGKRVVD----TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
             KR++       +  ++K  R    +  Y       A++ I EGC+  C++CV+P  +G
Sbjct: 118 -DKRLLTWQETQSFLYDEKMPRQRFEESHY-------AYIKIAEGCNNRCSYCVIPQIKG 169

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKG 259
              SR+   ++ E   L + GV EI +  Q+   +   G+D  +    ++LL +++EI G
Sbjct: 170 SYRSRTKESILGEVAWLAEQGVKEIIVTAQDTTRY---GMDIYQGLELANLLAAIAEIDG 226

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           +  +R    +P   +D LI+       +  YL +P+Q  +++IL  MNRR+   +  ++I
Sbjct: 227 IEWIRLLYCYPEVFTDELIEVMRKEPKICKYLDIPLQHANNKILTEMNRRYLKQDVERLI 286

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
           +++R   PDI + + FI GFPGE ++++    + V ++ + +   F YS    TP     
Sbjct: 287 NKLRKAIPDIVLRTTFITGFPGEGEEEYAELQNFVREMKFDRLGVFAYSREENTPAGMRK 346

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK---HGKEKGKLVGRSPWLQ 436
           +QV E V+ +R   L +   EQ        +G+ ++VL+E+   H +  G+  G +P + 
Sbjct: 347 DQVPEEVREDRKNRLLELQAEQAEENQKKWIGKTVKVLLEERLDHTQWLGRSEGDAPEID 406

Query: 437 SVVL---NSKNHNIGDIIKVRITDVKISTLYGE 466
             V      K  + GD+I+V +T+  I  L GE
Sbjct: 407 GQVYVRAQKKEFSTGDMIEVTVTNADIYDLEGE 439


>gi|221640408|ref|YP_002526670.1| MiaB-like tRNA modifying enzyme [Rhodobacter sphaeroides KD131]
 gi|221161189|gb|ACM02169.1| MiaB-like tRNA modifying enzyme [Rhodobacter sphaeroides KD131]
          Length = 425

 Score =  172 bits (435), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 131/435 (30%), Positives = 210/435 (48%), Gaps = 42/435 (9%)

Query: 30  KSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRN 89
            + GC++N Y++  M+++  + G      +D+A  +V+NTC +  +A  K    + R+R 
Sbjct: 7   STLGCRLNAYETEAMKELATAAG------VDNA--VVVNTCAVTAEAVRKAKQEIRRLR- 57

Query: 90  LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG------PQTYYRL-PELLER 142
                 +E     ++V GC AQ E        P V+ V+G      P T+  + P+L+  
Sbjct: 58  ------RENPQATIIVTGCAAQTE-PATFSAMPEVDRVIGNTEKMQPATWAAMAPDLIGE 110

Query: 143 ARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
               +RV VD   SV +    L  +DG + R R   A++ +Q GCD  CTFC++PY RG 
Sbjct: 111 T---ERVQVDDILSVRETAGHL--IDG-FGRHR---AYVQVQNGCDHRCTFCIIPYGRGN 161

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
             S     VV++ R+L+D G  E+ L G ++ +W G  L         ++  L  +  L 
Sbjct: 162 SRSVPAGVVVEQIRRLVDRGFAEVVLTGVDLTSW-GADLPAAPRLGDLVMRILRLVPDLA 220

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           RLR ++    +  + L+ A      LMP+LHL +Q G D ILK M RRH   +  +  + 
Sbjct: 221 RLRISSIDSIEADEALMGALATEPRLMPHLHLSLQHGDDLILKRMKRRHLRDDAIRFCEE 280

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
            R +RPDI   +D I GFP ET+  F  ++ LV++ G      F +SPR GTP + M  Q
Sbjct: 281 ARRLRPDIVFGADIIAGFPTETEAAFANSLKLVEECGLTFLHVFPFSPRQGTPAARM-PQ 339

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           +   V  ER   L+     + ++  +   G+   VL+E      G  +GR+     V   
Sbjct: 340 LAGPVIRERAAQLRTLGEARLLAHLEGERGRTHRVLME------GPRLGRTEQFTEVAF- 392

Query: 442 SKNHNIGDIIKVRIT 456
           + +   G I+   +T
Sbjct: 393 AADQAEGRILSATVT 407


>gi|254476913|ref|ZP_05090299.1| MiaB-like tRNA modifying enzyme [Ruegeria sp. R11]
 gi|214031156|gb|EEB71991.1| MiaB-like tRNA modifying enzyme [Ruegeria sp. R11]
          Length = 421

 Score =  172 bits (435), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 117/397 (29%), Positives = 191/397 (48%), Gaps = 31/397 (7%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  M+++    G +        + +V+NTC +  +A  K    + ++R  
Sbjct: 9   TLGCRLNAYETEAMKELSQQAGLQ--------NAVVVNTCAVTAEAVRKARQEIRKLR-- 58

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVV-----VGPQTYYRL---PELLER 142
                +E  D  ++V GC AQ E E       +  V+     + P+T+ ++   P+ +  
Sbjct: 59  -----RENPDAPIIVTGCAAQTEPETFAAMEEVTQVIGNTEKMQPKTWQQIAKGPDFIGT 113

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
               K  VD   SV +    L  +DG   R R   A++ +Q GCD  CTFC++PY RG  
Sbjct: 114 TE--KVQVDDIMSVTETAGHL--IDGFGTRSR---AYVQVQNGCDHRCTFCIIPYGRGNS 166

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            S     VVD+ ++L+D G  E+ L G ++ +W G  L         ++  L  +  L R
Sbjct: 167 RSVPAGVVVDQIKRLVDKGFNEVVLTGVDLTSW-GADLPATPKLGDLVMRILKLVPDLPR 225

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LR ++    ++ + L++A      LMP+LHL +Q G D ILK M RRH   +  +  +  
Sbjct: 226 LRISSIDSIEVDENLMQAIATESRLMPHLHLSLQHGDDLILKRMARRHLRDDAIRFTEEA 285

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
             +RPD+   +D I GFP ETD  F  ++ LV          F YS R GTP + +  QV
Sbjct: 286 SRLRPDMTYGADIIAGFPTETDAHFENSLKLVKDCNLTWLHVFPYSKREGTPAARIPNQV 345

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419
           +  V  +R   L+     Q  +   A VG+  ++L+E
Sbjct: 346 NGTVIKDRAARLRAAGDAQVQAHLAAQVGRTHQILME 382


>gi|332559404|ref|ZP_08413726.1| MiaB-like tRNA modifying enzyme [Rhodobacter sphaeroides WS8N]
 gi|332277116|gb|EGJ22431.1| MiaB-like tRNA modifying enzyme [Rhodobacter sphaeroides WS8N]
          Length = 425

 Score =  172 bits (435), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 131/435 (30%), Positives = 210/435 (48%), Gaps = 42/435 (9%)

Query: 30  KSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRN 89
            + GC++N Y++  M+++  + G      +D+A  +V+NTC +  +A  K    + R+R 
Sbjct: 7   STLGCRLNAYETEAMKELATAAG------VDNA--VVVNTCAVTAEAVRKAKQEIRRLR- 57

Query: 90  LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG------PQTYYRL-PELLER 142
                 +E     ++V GC AQ E        P V+ V+G      P T+  + P+L+  
Sbjct: 58  ------RENPQATIIVTGCAAQTE-PATFSAMPEVDRVIGNTEKMQPATWAAMAPDLIGE 110

Query: 143 ARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
               +RV VD   SV +    L  +DG + R R   A++ +Q GCD  CTFC++PY RG 
Sbjct: 111 T---ERVQVDDILSVRETAGHL--IDG-FGRHR---AYVQVQNGCDHRCTFCIIPYGRGN 161

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
             S     VV++ R+L+D G  E+ L G ++ +W G  L         ++  L  +  L 
Sbjct: 162 SRSVPAGVVVEQIRRLVDRGFAEVVLTGVDLTSW-GADLPAAPRLGDLVMRILRLVPDLA 220

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           RLR ++    +  + L+ A      LMP+LHL +Q G D ILK M RRH   +  +  + 
Sbjct: 221 RLRISSIDSIEADEALMGAIATEPRLMPHLHLSLQHGDDLILKRMKRRHLRDDAIRFCEE 280

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
            R +RPDI   +D I GFP ET+  F  ++ LV++ G      F +SPR GTP + M  Q
Sbjct: 281 ARRLRPDIVFGADIIAGFPTETEAAFANSLKLVEECGLTFLHVFPFSPRQGTPAARM-PQ 339

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           +   V  ER   L+     + ++  +   G+   VL+E      G  +GR+     V   
Sbjct: 340 LAGPVIRERAAQLRTLGEARLLAHLEGERGRTHRVLME------GPRLGRTEQFTEVAF- 392

Query: 442 SKNHNIGDIIKVRIT 456
           + +   G I+   +T
Sbjct: 393 AADQPEGRILSATVT 407


>gi|53803983|ref|YP_114150.1| hypothetical protein MCA1711 [Methylococcus capsulatus str. Bath]
 gi|53757744|gb|AAU92035.1| conserved hypothetical protein [Methylococcus capsulatus str. Bath]
          Length = 436

 Score =  172 bits (435), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 134/437 (30%), Positives = 212/437 (48%), Gaps = 26/437 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R  ++S GC++N  +       F + G+  V+   DADLIVLN+C +  +A  K    + 
Sbjct: 2   RINLQSLGCRLNEAELESWAREFQAAGHRLVSETGDADLIVLNSCAVTAEAVRKSRQMIR 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R + L + R +      +V++GC A   G+E       V++VV      RL E+  R   
Sbjct: 62  RTQRL-SPRAR------LVLSGCYATLHGDEAAALG--VDLVVSNADKSRLVEIAARELA 112

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            + +   ++S E     L  +     R+R   AF+ +Q+GC   CTFC+V   RG E SR
Sbjct: 113 LEAM--PEFSTEPGEAALFAL----GRQR---AFVKVQDGCRYRCTFCIVTVARGEERSR 163

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
             ++V+ E R+L   GV E+ L G ++  + G  L         L+ S+ +   + RLR 
Sbjct: 164 LPAEVIREIRRLQAEGVQEVVLTGVHLGGY-GSDLG---LPLDALIRSILQETEIPRLRL 219

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
            +  P D+         +    MP+LHLP+QSGSD +LK M RR  + E+ ++ D  R  
Sbjct: 220 GSLEPWDLPPGFFDLFEN-PRFMPHLHLPLQSGSDTVLKRMARRCKSEEFARLADHARRQ 278

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            PDI I++D IVGFPGET+ ++  ++  ++ IG+     F YS R GT  + M   V   
Sbjct: 279 VPDINITTDIIVGFPGETEREWEESLQFIETIGFGDIHVFTYSVREGTKAAAMGGHVPAE 338

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSP-WLQSVVLNSKN 444
           +K ER   L +    Q+ +     VG+ + VL E   +  G   G +P +L+  +   + 
Sbjct: 339 IKKERSRVLHELALGQKRALLGRFVGREMPVLWEN--RRDGADRGYTPNYLRVAIQTPET 396

Query: 445 HNIGDIIKVRITDVKIS 461
                I  VR+  V  S
Sbjct: 397 GLTNRITPVRLVKVDAS 413


>gi|18978284|ref|NP_579641.1| hypothetical protein PF1912 [Pyrococcus furiosus DSM 3638]
 gi|18894107|gb|AAL82036.1| hypothetical protein PF1912 [Pyrococcus furiosus DSM 3638]
          Length = 425

 Score =  172 bits (435), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 133/452 (29%), Positives = 227/452 (50%), Gaps = 39/452 (8%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + ++++YGC  N  D   M  +  S GYE V   ++AD++V+N+C +++    K+     
Sbjct: 3   KVYIENYGCARNRADGEIMAGLLLSSGYEIVEGEENADIVVVNSCAVKDPTEVKIAR--- 59

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           RIR L +   K      V+V GC+     + I  R   V+ V+G ++  R+ + +E A  
Sbjct: 60  RIRELLDRGKK------VIVTGCLPHVNPDAIDER---VSAVLGVKSIDRIVQAVEYALR 110

Query: 146 GKRVVDTDYSVEDKFER-LSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
           G++++    SV D  +R L  +D      RGV   L I EGC   CT+C     RG+  S
Sbjct: 111 GEKLI----SVPDWRKRNLDKLDFPRLSPRGVHFILPIAEGCLNGCTYCATRSARGVLKS 166

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
            S  ++V+  +  I  G  EI L  ++   +   G D      + LL  ++ I+G  R+R
Sbjct: 167 YSPEKIVEWVKWAIRQGYKEIWLSAEDTGCY---GFD-IGTNLAKLLDEITAIEGEFRIR 222

Query: 265 YTTSHPRDMS---DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
               +P  +    D LI+A+ D  V   +LHLPVQSG + IL+ M R +T  E+ +I++ 
Sbjct: 223 VGMMNPNHVLKFLDELIEAYKDEKVYK-FLHLPVQSGDNEILRRMGRTYTVEEFEEIVNA 281

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
            R   PD+ + +D IVGFPGE+++ F+ +++L+ +I   +    +YSPR GT  +   +Q
Sbjct: 282 FRREFPDLNLHTDIIVGFPGESEEAFQRSLELIKRIKPDKVNVSRYSPRPGTIAAKW-KQ 340

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           +   V  ER   + +   +     N   VG+ +++L+   GK KG        + +V +N
Sbjct: 341 LPGWVVKERSRIMHRVRLQISYEINQRYVGRKVDILVHGEGK-KGN-------VDAVTMN 392

Query: 442 SKNHNI-----GDIIKVRITDVKISTLYGELV 468
            K+  I     G+  + ++     + L GE+V
Sbjct: 393 YKHIIIPRGEKGEFARAKVNGATSTYLLGEIV 424


>gi|262039459|ref|ZP_06012763.1| protein YqeV [Leptotrichia goodfellowii F0264]
 gi|261746526|gb|EEY34061.1| protein YqeV [Leptotrichia goodfellowii F0264]
          Length = 453

 Score =  172 bits (435), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 122/447 (27%), Positives = 221/447 (49%), Gaps = 29/447 (6%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  +   F    Y+ V+  + AD+ ++NTC +   A +K    L R +N 
Sbjct: 27  TLGCKVNQYETEIIRKDFLDHNYKEVDFDEKADVYIVNTCTVTNVADKKNRKMLRRAKNT 86

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
                    D LVV  GC AQ   ++ L+    ++ ++G      +  ++      K V 
Sbjct: 87  -------NPDSLVVATGCYAQTNLDD-LKEMKEIDFIIGNSKKENVFNII-----NKNV- 132

Query: 151 DTDYSVEDKFERLSIVDGGYN-RKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209
            + Y V++ F+        Y   +    AF+ IQ+GC KFC++C +PY RG+  SR+   
Sbjct: 133 -SHYQVDNIFDEKEYSSNKYTILREKARAFVKIQDGCSKFCSYCKIPYARGLSRSRATEH 191

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE-KCTFSDLLYSLSEIKGLVRLRYTTS 268
           V++E   L + G  E+ L G N++ +   GLD E K  F  LL  +  +K + R+R ++ 
Sbjct: 192 VLEEINYLGEQGYKEVVLTGINMSEY---GLDLEPKTDFDTLLEKILAVKSVERVRVSSV 248

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
           +P  ++D  +    +   LMP+LH+ VQ+  D+IL+ M R + A      +++++   P+
Sbjct: 249 YPDTITDKFLGMLKNNPKLMPHLHVSVQTLDDKILRLMRRNYKAEFVVNTLEKVKREVPE 308

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           +A+++D IVGFP E +++F  TM  +D +G+A    F YS R  T    +  ++D   K 
Sbjct: 309 VALTADIIVGFPQEEEENFANTMKNLDSLGFADLHVFPYSDREKTTAMLLDGKIDAVEKK 368

Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN----SKN 444
            R+  +++    +   F    VG    V IE+  ++K    G +     V ++     KN
Sbjct: 369 RRVKKVEELNNIKYAEFRKKTVGSKQRVYIEEIVEDKA--FGYTENYLKVFIDLKKGEKN 426

Query: 445 H---NIGDIIKVRITDVKISTLYGELV 468
           +    + D++  +I D     L G+++
Sbjct: 427 NLDVKVSDLVNTKIVDFDGILLEGDII 453


>gi|317056861|ref|YP_004105328.1| MiaB-like tRNA modifying enzyme YliG [Ruminococcus albus 7]
 gi|315449130|gb|ADU22694.1| MiaB-like tRNA modifying enzyme YliG [Ruminococcus albus 7]
          Length = 443

 Score =  172 bits (435), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 122/435 (28%), Positives = 207/435 (47%), Gaps = 18/435 (4%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N  D+  M      +GYE V+    AD++++NTC   E A ++    +     L
Sbjct: 9   SLGCPKNQVDAEHMLFDLKKEGYELVSDAALADVVIVNTCGFIESAKQEAIDTILEFCTL 68

Query: 91  KNS-RIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149
           K   RIK      V+  GC+A+   +E+ +  P ++ VVG  +   + +++      +  
Sbjct: 69  KQEGRIKH-----VIATGCLAERYRDEMKKEIPELDAVVGLGSNGNIADIIRDIYRTEES 123

Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209
           +    S  D    L +  G         A++ I EGC   CT+C +P  RG   SR +  
Sbjct: 124 ICAYGSKTD----LPMEGGRLISTEPFFAYIKIAEGCSNCCTYCAIPAIRGKFRSRKMED 179

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSH 269
           +++EA+ L ++GV E+ ++ Q+   + G+ L G K    +LL  L EI G   +R   S+
Sbjct: 180 ILEEAKWLAEHGVTELVVIAQDTTRY-GEDLYG-KSMLPELLKKLCEIDGFKWIRTLYSY 237

Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329
           P  +SD  I      + L+ Y+ +P+Q  +  ILK MNR  +     ++I ++R+  PDI
Sbjct: 238 PERISDEFIDVLASEEKLVKYIDMPIQHCNAEILKRMNRVGSEAYLLELIQKLRARIPDI 297

Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAE 389
            + +  I GFPGET+  F    + V  +G+ +   F YSP  GT   +M +QVDE  +  
Sbjct: 298 VLRTTLIAGFPGETEAQFEELCEFVKNVGFERLGCFAYSPEEGTKAYSMPDQVDEQTRNR 357

Query: 390 RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVVL--NSK 443
           R   + ++       +N A +G+ +E++ E   +      GR    +P +   V   + K
Sbjct: 358 RADIIMQEQMLVADRYNQAQLGKTVEIVCEGFDRYAECYFGRGAADAPDIDGKVFFTSEK 417

Query: 444 NHNIGDIIKVRITDV 458
              +G  +KV + D 
Sbjct: 418 KVAVGQYVKVELFDT 432


>gi|296328428|ref|ZP_06870954.1| 2-methylthioadenine synthetase [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
 gi|296154502|gb|EFG95294.1| 2-methylthioadenine synthetase [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
          Length = 435

 Score =  172 bits (435), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 129/449 (28%), Positives = 228/449 (50%), Gaps = 40/449 (8%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  +++    +GYE V   D +D+ ++N+C +   A  K  + L R + +
Sbjct: 11  TLGCKVNQYETESIKNQLIKRGYEEVPFEDKSDIYIINSCTVTSIADRKTRNMLRRAKKI 70

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILR------------RSPIVNVVVGPQTYYRLPE 138
            N + K      V+V GC AQ    EIL             +S IVN V   +       
Sbjct: 71  -NPKAK------VIVTGCYAQTNSREILEIEDVDFVIDNKNKSNIVNFVGAIEDIS---- 119

Query: 139 LLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
             ER + G    + +Y  E +F  L         +    A++ IQ+GC+ FC++C +P+ 
Sbjct: 120 -FEREKNGNIFQEKEYQ-EYEFATL---------REMTRAYVKIQDGCNHFCSYCKIPFA 168

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258
           RG   SR    ++ E  KL+++G  EI L+G +++A+ G+  + EK  F  LL  +  IK
Sbjct: 169 RGKSRSRKKENILKEIEKLVEDGFKEIILIGIDLSAY-GEDFE-EKDNFESLLEDILRIK 226

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
            L R+R  + +P  ++D  I+   +   LMP+LH+ +QS  D +LK+M R + +   ++ 
Sbjct: 227 DLKRVRIGSVYPDKITDRFIELFKN-KKLMPHLHISLQSCDDTVLKNMRRNYGSSLIKKS 285

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           + +++S   D+  ++D IVGFP E +  F+ T D++ +I ++    F+YS R GT  SNM
Sbjct: 286 LLKLKSKVKDMEFTADVIVGFPKEDEIMFQNTYDVIKEIEFSGLHIFQYSDREGTIASNM 345

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSP-WLQS 437
             ++D   K +R   L    +E  V      + + +EVL+E+   + G+  G S  +L+ 
Sbjct: 346 DGKIDAKTKKQRADRLDSLKQEMIVDSRKKYLEKSLEVLVEEE--KNGEYFGYSQNYLRV 403

Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGE 466
              + K   + ++I V++  V+   L  E
Sbjct: 404 KFRSDKKDLVNNLINVKVKCVENDILIAE 432


>gi|227872687|ref|ZP_03991017.1| possible 2-methylthioadenine synthetase [Oribacterium sinus F0268]
 gi|227841501|gb|EEJ51801.1| possible 2-methylthioadenine synthetase [Oribacterium sinus F0268]
          Length = 423

 Score =  172 bits (435), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 130/455 (28%), Positives = 227/455 (49%), Gaps = 53/455 (11%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFS--QGYERVNSMDD---ADLIVLNTCHIREKAAEKV 80
           + +++S GC  N  D+   E + F   Q Y   +  D+   A++ ++NTC     A E+ 
Sbjct: 2   KLYLESLGCDKNRVDA---EKLLFELLQKYPGSSVTDEPSEAEIAIVNTCSFIGPAKEES 58

Query: 81  YSFLGRIRNLKNSRIKEGGDL-LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYY-RLPE 138
              +     L  ++ KE G L  ++VAGC+ +   +EI +  P ++ +   + Y  RL  
Sbjct: 59  IQCI-----LDLAQYKETGKLEKLIVAGCLVERYKDEIRKELPEIDEITSVKDYVKRLDH 113

Query: 139 LLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
            + R   G++                     Y+R      +L I EGCDK+C++C++P  
Sbjct: 114 QMARVESGEK---------------------YSR------YLKIAEGCDKYCSYCIIPRL 146

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258
           RG   S     V++EAR L+  G  E+ L+ Q    + G  L  +K   ++LL  LSEI 
Sbjct: 147 RGHYRSIPKELVLEEARALVSEGAGELILVAQETTLY-GTDLYKKK-ALAELLAELSEIP 204

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
            L  +R    +P ++   LI+       +  YL LP+Q  SDRILK MNRR    E ++ 
Sbjct: 205 NLQWIRILYCYPEEIEPELIREMKRNPKVCHYLDLPIQHASDRILKRMNRRTRKEELKEK 264

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           I  +R   PDIA+ +  I GFPGET++DF+  +D + ++ + +  +F YS   GT  + M
Sbjct: 265 IALLRKEMPDIALRTTIITGFPGETEEDFQEVLDFISEMRFDRLGAFPYSQEEGTKAAEM 324

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDA--CVGQIIEVLIEKHGKEKGKLVGRS---- 432
            +Q+ E +K +RL  + +   +Q ++F  A   +G+ ++VL+  + +E+ +++ RS    
Sbjct: 325 EDQIPEKLKNQRLSQIME--LQQNIAFRKAEEQIGRKLKVLVCGYDEEEQRVLCRSYMDA 382

Query: 433 PWLQS-VVLNSKNHNIGDIIKVRITDVKISTLYGE 466
           P + S + +  +   +G  +  ++ D +   L GE
Sbjct: 383 PDVDSYLYVFGEKKEVGSFLYAKVIDTEGYDLIGE 417


>gi|307200648|gb|EFN80756.1| CDK5 regulatory subunit-associated protein 1 [Harpegnathos
           saltator]
          Length = 1337

 Score =  172 bits (435), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 123/421 (29%), Positives = 205/421 (48%), Gaps = 83/421 (19%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           Q+ + + YGCQMNV D+  +  +  ++GY++   M+ AD+++L TC IR+ A +KV++ L
Sbjct: 70  QKVYFEIYGCQMNVNDTEIIWSILKARGYQQTKDMEGADIVLLITCSIRDNAEQKVWNKL 129

Query: 85  GRIRNLKNSRIKEGG-DLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
             +  ++N R K+ G  + + + GC+A+    +IL +  +V+V+ GP +Y  LP L    
Sbjct: 130 EYLNVIRNKRRKKSGVSMKIGLLGCMAERLKTKILDKGKLVDVIAGPDSYKDLPRL---- 185

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC-VVPYTRGIE 202
                              L++ D     +  V   L+  E      T+  V+P      
Sbjct: 186 -------------------LAVTDS----ETAVNVVLSFDE------TYADVMP------ 210

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR-----------------GKGLD---- 241
                             G+ E+TLLGQNVN++R                  KG      
Sbjct: 211 ------------------GIKEVTLLGQNVNSYRDLSQLQFVVPVGTGTHLAKGFKTVYK 252

Query: 242 GEK--CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
           G+K    F DLL  +S I   +R+R+T+ HP+D  D ++    +   +   +HLP QSG+
Sbjct: 253 GKKGGLRFCDLLDKVSLIDPEMRVRFTSPHPKDFPDEVLHLIAERPNICKQIHLPAQSGN 312

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
             +L  M R +T   Y  ++  IR + PD+ +S+DFI GF GET+++F+ T+ L++++ Y
Sbjct: 313 SAVLVRMRRGYTREAYLDLVHNIRDILPDVYLSADFIAGFCGETEEEFQDTLSLLEQVKY 372

Query: 360 AQAFSFKYSPRLGTPGSNML-EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI 418
             A+ F YS R  T       + V++ VK ER+  +    R +    N A +GQ   VL+
Sbjct: 373 NYAYMFAYSMREKTTAHRRYKDDVEQRVKIERVARMITLYRREAEKLNKAQIGQRQLVLV 432

Query: 419 E 419
           E
Sbjct: 433 E 433


>gi|291556571|emb|CBL33688.1| SSU ribosomal protein S12P methylthiotransferase [Eubacterium
           siraeum V10Sc8a]
          Length = 446

 Score =  171 bits (434), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 123/450 (27%), Positives = 213/450 (47%), Gaps = 26/450 (5%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N  D+  M       G++ VN    AD++++NTC   + A E+    +    + 
Sbjct: 11  SLGCPKNQCDAELMLAKIAKAGFKIVNEAGLADVVIINTCGFIQSAKEEAIEEIMEAISR 70

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
           KN  I +     ++V GC+A+   +++    P ++ VVG      + E++      +RV+
Sbjct: 71  KNDGINKK----IIVTGCLAERYQKQMDEEFPEIDAVVGIAKNDDIVEIINSVMLDRRVI 126

Query: 151 DTDYSVEDKFE--RLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
                +    E  +L      Y       A+L I +GC   C++C +P  RG   SR + 
Sbjct: 127 TFGDKLCHNMEGDKLQSTLPHY-------AYLRIADGCSNKCSYCAIPLIRGKMRSRKME 179

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYTT 267
            +++EA+K  +NGV E+ ++ Q+V A+   G+D  +K    DLL  L +I G+  +R   
Sbjct: 180 NIIEEAKKFAENGVKELVIVAQDVTAY---GIDLYKKYALPDLLKQLCKIDGIKWIRLLY 236

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
            +P  M+D LI+     D ++ Y+ +P+Q  +  IL++M R       R++  ++R   P
Sbjct: 237 CYPERMTDELIETIKTEDKVLNYIDIPIQHCNKEILRNMYRGGDEQSLRELFAKLRREIP 296

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
            + + +  I GFPGET++ F    + V+ I + +   F YS    TP + M +QVDE  +
Sbjct: 297 GVVLRTTLITGFPGETEEQFSELAEFVNDIKFERLGCFAYSAEEDTPAAEMPDQVDEGER 356

Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVLNSK 443
             R   +  +   +   +    VG   EV+ E   +      GRS    P +  ++  + 
Sbjct: 357 QRRADIITSEQEIRMGEYYAGMVGNTYEVVCEGFDRYSDMYFGRSMHFAPEIDGMIYFTS 416

Query: 444 NHN-----IGDIIKVRITDVKISTLYGELV 468
             +     IGD + V+ITDV  + L GE V
Sbjct: 417 AKDKGSLTIGDFVNVKITDVLENNLLGERV 446


>gi|269303354|gb|ACZ33454.1| RNA modification enzyme, MiaB family [Chlamydophila pneumoniae
           LPCoLN]
          Length = 421

 Score =  171 bits (434), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 122/443 (27%), Positives = 220/443 (49%), Gaps = 44/443 (9%)

Query: 33  GCQMNVYDSLRMEDMFFSQGYERV-NSMDDADLIVLNTCHIREKAAEKVYSFLGR--IRN 89
           GC++N Y+     D     GY+ V +S   ADL ++NTC +   A        GR  +R 
Sbjct: 16  GCRVNQYEVQAYRDQLTILGYQEVLDSEIPADLCIINTCAVTASAESS-----GRHAVRQ 70

Query: 90  LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149
           L     ++     +VV GC+ +++ E          +V   +                R+
Sbjct: 71  L----CRQNPTAHIVVTGCLGESDKEFFASLDRQCTLVSNKEK--------------SRL 112

Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209
           ++  +S +  F    I    ++ +    AF+ +Q+GC+ FC++C++PY RG  +SR   +
Sbjct: 113 IEKIFSYDTTFPEFKI----HSFEGKSRAFIKVQDGCNSFCSYCIIPYLRGRSVSRPAEK 168

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSH 269
           ++ E   ++D G  E+ + G NV    G   DGE+ + + L+  + +I G+ R+R ++  
Sbjct: 169 ILAEIAGVVDQGYREVVIAGINV----GDYCDGER-SLASLIEQVDQIPGIERIRISSID 223

Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329
           P D+++ L +A        P  HL +QSGS+ ILK MNR+++  ++   +++ R+  P  
Sbjct: 224 PDDITEDLHRAITSSRHTCPSSHLVLQSGSNSILKRMNRKYSRGDFLDCVEKFRASDPRY 283

Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAE 389
           A ++D IVGFPGE+D DF  T+ +++ +G+ +  SF +S R  T       Q+   V  E
Sbjct: 284 AFTTDVIVGFPGESDQDFEDTLRIIEDVGFIKVHSFPFSARRRTKAYTFDNQIPNQVIYE 343

Query: 390 R---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH- 445
           R   L  + K++ ++++      +G+  EVL+EK   +    +G SP+ + V        
Sbjct: 344 RKKYLAEVAKRVGQKEMMKR---LGETTEVLVEKVTGQVA--MGHSPYFEKVSFPVVGTV 398

Query: 446 NIGDIIKVRITDVKISTLYGELV 468
            I  ++ VR+  V+   L GE+V
Sbjct: 399 AINTLVSVRLDRVEEEGLIGEIV 421


>gi|294678991|ref|YP_003579606.1| MiaB family RNA modification enzyme [Rhodobacter capsulatus SB
           1003]
 gi|294477811|gb|ADE87199.1| RNA modification enzyme, MiaB family [Rhodobacter capsulatus SB
           1003]
          Length = 419

 Score =  171 bits (434), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 132/433 (30%), Positives = 208/433 (48%), Gaps = 37/433 (8%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  M+++    G         +  +V+NTC +  +A  K       IR L
Sbjct: 8   TLGCRLNAYETEAMKELAAQAGL--------SGAVVVNTCAVTAEAVRKAKQ---EIRKL 56

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVV-----VGPQTYYRL-PELLERAR 144
                +E     ++V GC AQ E E     + +  VV     + P+T+  L P+  +   
Sbjct: 57  A----RENPGAAIIVTGCAAQTEPETFAAMTEVTRVVGNHEKMQPETWAALAPKGADFIG 112

Query: 145 FGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             +RV VD   SV++    L  +DG + R R   A++ +Q GCD  CTFC++P+ RG   
Sbjct: 113 ETERVMVDDILSVKETAGHL--IDG-FGRHR---AYVQVQNGCDHRCTFCIIPFGRGNSR 166

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           S     VV++ ++L+D G  E+ L G ++ +W G  L G       ++  L  +  L RL
Sbjct: 167 SVPAGVVVEQIKRLVDRGFAEVVLTGVDLTSW-GADLPGAPRMGDLVMRILRLVPDLARL 225

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R ++    +  D L+ A      LMP+LHL +Q G D ILK M RRH   +     +  R
Sbjct: 226 RISSIDSIEADDNLMLAIATEPRLMPHLHLSLQHGDDMILKRMKRRHLRDDAIAFCEEAR 285

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
            +RP I   +D I GFP ET++ F  ++ LV+  G      F YS R GTP + M  +V 
Sbjct: 286 RLRPGIVFGADIIAGFPTETEEMFENSLRLVEDCGLTFLHVFPYSARKGTPAARM-PRVA 344

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
             V  +R   L+       V    A VGQ+ EVL E      G  +GR+ +   V  + +
Sbjct: 345 GPVIKDRAARLRAAGDAALVRHLQAEVGQLREVLTE------GPRLGRTEYFTEVSFD-R 397

Query: 444 NHNIGDIIKVRIT 456
           +   G ++ +RI+
Sbjct: 398 DMPEGTVMSLRIS 410


>gi|241762301|ref|ZP_04760382.1| MiaB-like tRNA modifying enzyme YliG [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|241373204|gb|EER62834.1| MiaB-like tRNA modifying enzyme YliG [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
          Length = 443

 Score =  171 bits (434), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 124/451 (27%), Positives = 211/451 (46%), Gaps = 42/451 (9%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC   + DS R+     S+GY   +  D+AD++++NTC   + A E+    +G     
Sbjct: 15  SLGCPKALVDSERILTKLRSEGYNLSSQYDEADVVLVNTCGFIDSAKEESLDAIGEAMA- 73

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
           +N R        V+V GC+   E + I  R P +  + G Q Y    E++        + 
Sbjct: 74  ENGR--------VIVTGCLGN-EADRIRERFPDILAITGAQQY---EEVVSAVHDAAPIE 121

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
            + Y      + L +    Y+       +L I EGC+  C+FC++P  RG  +SR    +
Sbjct: 122 ASPYVDLVPEQGLKLTPRHYS-------YLKISEGCNHRCSFCIIPSLRGDLVSRRADAI 174

Query: 211 VDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYSLSEIKG 259
           + EA KL+  G  E+ ++GQ+ +A           W+ + +   K   +DL+  L E+  
Sbjct: 175 LREAEKLVAAGTKELLVIGQDSSAYGVDLRHQEYRWKDRMV---KADLTDLVRGLGELGA 231

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
            VRL Y   +P   +   + A G   +++PYL +P Q  S  +LK M R     +    +
Sbjct: 232 WVRLHYVYPYPHVDTLIPLMAEG---LILPYLDIPFQHASPSVLKRMKRPANEVKILDRL 288

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            + R + PDIA+ S F+VGFPGET+ DF+  +D +D+    +  +F++    G   +   
Sbjct: 289 TKWREIVPDIALRSSFVVGFPGETEQDFQYLLDWLDEAQLDRVGAFRFEAVEGAAANAFD 348

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK---HGKEKGKLVGRSPWLQ 436
             V E VK ER   L +K  +   +   A +G+ I  +I++    G   G+    +P + 
Sbjct: 349 GAVPEEVKNERYQRLMEKAAQISEAKLQAKIGRDIATIIDRTDGEGGASGRSYADAPEID 408

Query: 437 SVV--LNSKNHNIGDIIKVRITDVKISTLYG 465
             V   ++ +  IGDI+ +R+ D     L+G
Sbjct: 409 GEVHLRDADDLKIGDIVTIRVEDADEHDLFG 439


>gi|154249967|ref|YP_001410792.1| MiaB-like tRNA modifying enzyme YliG [Fervidobacterium nodosum
           Rt17-B1]
 gi|238065356|sp|A7HMK2|RIMO_FERNB RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|154153903|gb|ABS61135.1| MiaB-like tRNA modifying enzyme YliG [Fervidobacterium nodosum
           Rt17-B1]
          Length = 431

 Score =  171 bits (434), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 135/447 (30%), Positives = 211/447 (47%), Gaps = 25/447 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + +V   GC  N  D    +      G+E V+ ++DAD +V++TC     A ++    + 
Sbjct: 5   KLYVIVLGCAKNEADFSLFKYHLKQLGHEVVDDVEDADGVVIDTCGFIVDAKQESIDTIL 64

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
              ++K    K+  D  V V GC+ Q   +++    P V+   G      L E + + + 
Sbjct: 65  EFASIK----KQKPDFKVYVTGCLVQRYPKDLPLEIPEVDGWFGVIPPKNLAESINKTK- 119

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            K + D     E  FE     D  Y       A++ I +GCD+ CTFC +P  +G  +SR
Sbjct: 120 -KYITDPVAVYE--FEGRVDSDLPY-------AYVKIADGCDRACTFCTIPKFKGGFVSR 169

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            L  +  E R LI+NG  EI L+ Q+   + G  L G K    +LL  +++I G   +R 
Sbjct: 170 KLEDIEKEVRYLIENGKKEIVLVAQDTTGY-GVDLYG-KQMLPELLKRINDIDGNFWIRV 227

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
              HP  ++D ++K     + ++ Y  +P+Q  SD ILK M R  +  E  ++ D+IRS+
Sbjct: 228 MYMHPDHVTDEILKGFS-YEKVVKYFDIPIQHSSDNILKLMGRTKSTKELEELFDKIRSL 286

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P   + +  IVGFPGET DDF   +D +  I + +   F YS        N+  +V   
Sbjct: 287 YPQAVLRTSIIVGFPGETKDDFEQLIDFIRTIEFDRLGGFVYSDEEDAASYNLPNKVSLK 346

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVLN 441
              +RL  L +   E     N   VG++I+VL E+  +  G ++GRS    P +   V  
Sbjct: 347 TAQKRLDTLMEVQAEISFLRNQRLVGKVIDVLFEE--EVNGVIIGRSYMDAPEVDGNVF- 403

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
            K H I    KV+IT+     L GELV
Sbjct: 404 VKGHGINRFGKVKITEADTYDLEGELV 430


>gi|300087524|ref|YP_003758046.1| MiaB-like tRNA modifying enzyme [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
 gi|299527257|gb|ADJ25725.1| MiaB-like tRNA modifying enzyme [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
          Length = 400

 Score =  171 bits (434), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 122/408 (29%), Positives = 201/408 (49%), Gaps = 39/408 (9%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R ++ + GC++N  +S  +     + GY   ++  DAD++V+NTC +   A  K      
Sbjct: 3   RVYLATQGCKLNQAESESLRRGLEAVGYLLTDTAKDADIMVVNTCTVTNLADRKARQ--- 59

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            IR+    R+K G  + V+V GC A+ + E +     +  VV   +    +PE+L    F
Sbjct: 60  SIRSA--GRVKPG--IKVIVTGCYAERQAESVGALPEVAKVVAMSEKDI-IPEILHELGF 114

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
               V T           +I  G   R R   +F+ IQ+GCD  C +C+VP  R  + + 
Sbjct: 115 PPATVGT-----------AIATG---RTR---SFIKIQDGCDYRCAYCIVPTVRPRKSAV 157

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            + +V+DE R     G  E+ L G  +  +R           + L+ ++ +   + RLR 
Sbjct: 158 PVEKVIDEIRARRREGCREVVLTGTEIGEYRTGNT-----ALAGLIDAVLKETDIERLRI 212

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
           ++  PR+++  L+    +  +   + HL +QSGSD +L+ M RR+   EY + +  IR V
Sbjct: 213 SSLQPREITPELMACWRNPRMCR-HFHLSLQSGSDPVLRRMRRRYNTAEYAEALVAIRQV 271

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P+ A++SD I GFPGETD +F  ++  ++K G+A+   F +S R GTP + M  QVD  
Sbjct: 272 VPEAAVTSDIIAGFPGETDSEFADSLKFIEKCGFARLHVFPFSARPGTPAAGMEGQVDRR 331

Query: 386 V---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG 430
               + +RLL L     E +  F  +  G+  +VL E  GK  G+  G
Sbjct: 332 TVRQRTDRLLALAV---ECEAEFRRSMSGRSFDVLFE--GKRNGQWEG 374


>gi|239833059|ref|ZP_04681388.1| MiaB-like tRNA modifying enzyme [Ochrobactrum intermedium LMG 3301]
 gi|239825326|gb|EEQ96894.1| MiaB-like tRNA modifying enzyme [Ochrobactrum intermedium LMG 3301]
          Length = 427

 Score =  171 bits (434), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 120/400 (30%), Positives = 199/400 (49%), Gaps = 26/400 (6%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V ++GC++N Y+S  M+    + G   +  + D   I+ NTC +  +A  +    + + R
Sbjct: 5   VVTFGCRLNTYESEVMKREADAAG---LGELKDG-AIIFNTCAVTAEAVRQARQAIRKAR 60

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ------TYYRLPELLER 142
                  +E  +  ++V GC AQ E +        V++++G +      +Y  LP+    
Sbjct: 61  -------RENPEARIIVTGCAAQTEADNFAAMDE-VDLILGNEEKLKSNSYRMLPDFGVN 112

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            +F K  V+    V +    +  VD    R R   AF+ +Q GCD  CTFC++PY RG  
Sbjct: 113 -QFEKVRVNDIMEVRETASHM--VDAIEGRAR---AFVQVQNGCDHRCTFCIIPYGRGNS 166

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            S  +  VVD+ ++L+ NG  E+ L G ++ ++ G  L G       +   L+++  L R
Sbjct: 167 RSVPMGAVVDQVKRLVGNGYAEVVLTGVDMTSY-GPDLPGNLRLGKLVKTVLNQVPDLQR 225

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LR ++    +  D L+ A  +   LMP+LHL +Q+G D ILK M RRH   +  +  + +
Sbjct: 226 LRLSSIDSIEADDDLMDAIANEKRLMPHLHLSLQAGDDMILKRMKRRHLRDDSIRFCETV 285

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R +RPDI   +D I GFP ET++ F+ ++ +V++ G +    F YS R GTP + M  QV
Sbjct: 286 RGLRPDIVFGADIIAGFPTETEEMFQNSLKIVEECGLSHLHVFPYSAREGTPAARM-PQV 344

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422
              +  ER   L+ +          A  G +  +L+EK G
Sbjct: 345 RREIVKERAARLRAEGDRAYKKHLGALNGTMQRLLVEKEG 384


>gi|77464514|ref|YP_354018.1| MiaB-like radical SAM protein [Rhodobacter sphaeroides 2.4.1]
 gi|77388932|gb|ABA80117.1| MiaB-like Radical SAM protein [Rhodobacter sphaeroides 2.4.1]
          Length = 425

 Score =  171 bits (434), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 131/435 (30%), Positives = 210/435 (48%), Gaps = 42/435 (9%)

Query: 30  KSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRN 89
            + GC++N Y++  M+++  + G      +D+A  +V+NTC +  +A  K    + R+R 
Sbjct: 7   STLGCRLNAYETEAMKELATAAG------VDNA--VVVNTCAVTAEAVRKAKQEIRRLR- 57

Query: 90  LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG------PQTYYRL-PELLER 142
                 +E     ++V GC AQ E        P V+ V+G      P T+  + P+L+  
Sbjct: 58  ------RENPQATIIVTGCAAQTE-PATFSAMPEVDRVIGNTEKMQPATWAAMAPDLIGE 110

Query: 143 ARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
               +RV VD   SV +    L  +DG + R R   A++ +Q GCD  CTFC++PY RG 
Sbjct: 111 T---ERVQVDDILSVRETAGHL--IDG-FGRHR---AYVQVQNGCDHRCTFCIIPYGRGN 161

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
             S     VV++ R+L+D G  E+ L G ++ +W G  L         ++  L  +  L 
Sbjct: 162 SRSVPAGVVVEQIRRLVDRGFAEVVLTGVDLTSW-GADLPAAPRLGDLVMRILRLVPDLA 220

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           RLR ++    +  + L+ A      LMP+LHL +Q G D ILK M RRH   +  +  + 
Sbjct: 221 RLRISSIDSIEADEALMGAIATEARLMPHLHLSLQHGDDLILKRMKRRHLRDDAIRFCEE 280

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
            R +RPDI   +D I GFP ET+  F  ++ LV++ G      F +SPR GTP + M  Q
Sbjct: 281 ARRLRPDIVFGADIIAGFPTETEAAFANSLKLVEECGLTFLHVFPFSPRQGTPAARM-PQ 339

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           +   V  ER   L+     + ++  +   G+   VL+E      G  +GR+     V   
Sbjct: 340 LAGPVIRERAAQLRALGEARLLAHLEGERGRTHRVLME------GPRLGRTEQFTEVAF- 392

Query: 442 SKNHNIGDIIKVRIT 456
           + +   G I+   +T
Sbjct: 393 AADQPEGRILSATVT 407


>gi|325528907|gb|EGD05942.1| ribosomal protein S12 methylthiotransferase [Burkholderia sp.
           TJI49]
          Length = 453

 Score =  171 bits (434), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 134/477 (28%), Positives = 219/477 (45%), Gaps = 61/477 (12%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  FV S GC   + DS ++     ++GYE   + D ADL+V+NTC   ++A ++    
Sbjct: 5   PKVGFV-SLGCPKALVDSEQIITQLRAEGYEISGTYDGADLVVVNTCGFIDEAVQESLDA 63

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCV---AQAEGEEILRR-SPIVNVVVGPQTYYRLPEL 139
           +G         + E G   V+V GC+   A A G  ++    P V  V GP     + + 
Sbjct: 64  IGEA-------LTENGK--VIVTGCLGAKASASGANLIEEVHPKVLAVTGPHAVGEVMQA 114

Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           +  +   K          D F  L +   G        A+L I EGC+  CTFC++P  R
Sbjct: 115 V-HSHLPKP--------HDPFVDL-VPAAGIKLTPRHYAYLKISEGCNHRCTFCIIPSMR 164

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFS 248
           G  +SR +++V+ EA  L  +GV E+ ++ Q+ +A           W GK +   K   +
Sbjct: 165 GDLVSRPVAEVMLEAENLFKSGVKELLVISQDTSAYGVDVKYRTGFWNGKPI---KTRMT 221

Query: 249 DLLYSLSEIKG----LVRLRYTTSHPRD------MSDCLIKAHGDLDVLMPYLHLPVQSG 298
           DL+ +L E+       VRL Y   +P        M++   K H     ++PYL +P Q  
Sbjct: 222 DLVAALGELAAQYGAWVRLHYVYPYPSVDEVIPLMAEGPFKGH-----VLPYLDVPFQHA 276

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
              +LK M R   A +  + + + R + PD+ I S FI GFPGET++ F   +D + +  
Sbjct: 277 HPEVLKRMKRPANAEKVLERVQKWREICPDLTIRSTFIAGFPGETEEQFETLLDFIREAE 336

Query: 359 YAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI 418
             +   F YSP  G   + +   + ++V+ ER     +   E      +  VG+ ++VLI
Sbjct: 337 LDRVGCFAYSPVEGASANELDGALPDDVREERRARFMEVAEEVSAKRMERKVGKTVKVLI 396

Query: 419 EKHGKEK--GKLVGRSPWLQSVVL------NSKNHNIGDIIKVRITDVKISTLYGEL 467
           ++   E   G+    +P +  VV        SK + +GD + V+IT      L+GE+
Sbjct: 397 DEVSAEGGIGRTAADAPEIAGVVYVEPATKASKRYKVGDFVSVKITGADGHDLWGEV 453


>gi|163796738|ref|ZP_02190696.1| tRNA 2-methylthioadenosine synthase-like protein [alpha
           proteobacterium BAL199]
 gi|159177992|gb|EDP62539.1| tRNA 2-methylthioadenosine synthase-like protein [alpha
           proteobacterium BAL199]
          Length = 430

 Score =  171 bits (434), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 125/401 (31%), Positives = 195/401 (48%), Gaps = 28/401 (6%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V+++GC++N Y+S  +     + G         +  IV+NTC +  +A  +    + R+ 
Sbjct: 15  VETFGCRLNAYESEVIRGHLDAAG--------KSGTIVVNTCAVTSEAERQARQSIRRL- 65

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPI--VNVVVGPQTYYRLPELLERARFG 146
               +R   G +  +VV GC AQ +     R + I  V  VVG +   +     + A   
Sbjct: 66  ----ARENPGAE--IVVTGCAAQIDPA---RYAAIDGVTRVVGNEEKMQAGTWSDTAPPA 116

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
             V D     E     +S  DG   R R   AF+ +Q+GCD  CTFC++PY RG   S  
Sbjct: 117 IHVTDIMEVRETAAHLVSEFDG---RAR---AFVQVQQGCDHRCTFCIIPYGRGNSRSVP 170

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
           +  +V++ R L   G  EI L G +V ++ G  L G       +   L+ +  L RLR +
Sbjct: 171 IGAIVEQVRALAAGGYREIVLTGVDVTSF-GGDLPGRPSLGQMMRRLLALVPELERLRLS 229

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
           +  P ++ + L +   D   LMP+LHL +Q+G D +LK M RRH   +  ++++R+R++R
Sbjct: 230 SVDPVEIDEDLFRLIADEPRLMPHLHLSLQAGDDMVLKRMKRRHLRDDVFRLVERVRALR 289

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           P  A  +D I GFP E+D  F  T  L+  +G      F YSPR GTP + M  QV  ++
Sbjct: 290 PGTAFGADVIAGFPTESDAMFENTAALLTDLGIQHLHVFPYSPRPGTPAARM-PQVPGDI 348

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK 427
           +  R   L+        S+    VG+   VLIE  G  +G+
Sbjct: 349 RKARAARLRDIGAANLESWTAGLVGRDDRVLIEVDGAGRGE 389


>gi|218670177|ref|ZP_03519848.1| putative 2-methylthioadenine synthetase (miaB-like) protein
           [Rhizobium etli GR56]
          Length = 155

 Score =  171 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 76/120 (63%), Positives = 97/120 (80%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F+K+YGCQMNVYDS RM D     GYE    M++ADL++LNTCHIREKAAEKVYS L
Sbjct: 35  RKVFIKTYGCQMNVYDSTRMSDALARDGYEPTEDMEEADLVLLNTCHIREKAAEKVYSAL 94

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR+R +K  +  +G ++++ VAGCVAQAEGEEILRR+P V+VV+GPQTY+RLPE L RA+
Sbjct: 95  GRLREMKKKKAADGREMMIGVAGCVAQAEGEEILRRAPAVDVVIGPQTYHRLPEALRRAK 154


>gi|195335207|ref|XP_002034266.1| GM19985 [Drosophila sechellia]
 gi|194126236|gb|EDW48279.1| GM19985 [Drosophila sechellia]
          Length = 556

 Score =  171 bits (434), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 133/471 (28%), Positives = 227/471 (48%), Gaps = 53/471 (11%)

Query: 18  VDQCIVP--QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREK 75
           + + ++P  Q+ FVK++GC  N  DS  M     + GY R++  ++ADL +LN+C ++  
Sbjct: 62  IHESVIPGTQKVFVKTWGCAHNNSDSEYMAGQLAAYGY-RLSGKEEADLWLLNSCTVKNP 120

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVN--VVVGPQTY 133
           + +         RN   S ++ G    +VVAGCV Q        +S  +N   V+G Q  
Sbjct: 121 SEDT-------FRNEIKSGMQNGK--YIVVAGCVPQGAP-----KSDYLNGLSVIGVQQI 166

Query: 134 YRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYN------RKRGVTAFLTIQEGCD 187
            R+ E++E    G  V      +++K + L     G        RK  +   ++I  GC 
Sbjct: 167 DRVVEVVEETLKGHSV----QLLQNKKKVLGRRVAGAPLSLPKVRKNPLIEIISINSGCL 222

Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTF 247
             CT+C   + RG   S    +VV+ AR+    G CEI L  ++  A+ G+ +     + 
Sbjct: 223 NQCTYCKTKHARGDLASYPPEEVVERARQSFAEGCCEIWLTSEDTGAY-GRDIGS---SL 278

Query: 248 SDLLYSLSEI--------KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
            +LL+ L E+         G+    Y   H  +++  +         +  +LH+PVQSGS
Sbjct: 279 PELLWKLVEVIPENCMLRVGMTNPPYILEHLEEVAKVMQHPR-----VYSFLHVPVQSGS 333

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
           D +L  M R +   ++  ++D +R   P + I++D I GFP ET+DDF  TM L  K  +
Sbjct: 334 DSVLGEMKREYCRQDFEHVVDFLRERVPGVTIATDIICGFPTETEDDFEETMTLCAKYRF 393

Query: 360 AQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDAC--VGQIIEVL 417
              F  ++ PR GTP + M E++  N+  +R     K+L +   S+      VG+I  VL
Sbjct: 394 PSLFINQFFPRPGTPAAKM-ERIPANLVKKR----TKRLTDLFYSYEPYAERVGEIYTVL 448

Query: 418 IEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           + +   +K   VG +   + V+L  +++ +G  + VRIT     ++ GE++
Sbjct: 449 VTEVSHDKLHYVGHNKSYEQVLLPMRDNLLGTRVNVRITSASKFSMVGEIL 499


>gi|126463354|ref|YP_001044468.1| MiaB-like tRNA modifying enzyme [Rhodobacter sphaeroides ATCC
           17029]
 gi|126105018|gb|ABN77696.1| MiaB-like tRNA modifying enzyme [Rhodobacter sphaeroides ATCC
           17029]
          Length = 425

 Score =  171 bits (434), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 129/435 (29%), Positives = 207/435 (47%), Gaps = 42/435 (9%)

Query: 30  KSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRN 89
            + GC++N Y++  M+++  + G          + +V+NTC +  +A  K    + R+R 
Sbjct: 7   STLGCRLNAYETEAMKELATAAGV--------GNAVVVNTCAVTAEAVRKAKQEIRRLR- 57

Query: 90  LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG------PQTYYRL-PELLER 142
                 +E     ++V GC AQ E        P V+ V+G      P T+  + P+L+  
Sbjct: 58  ------RENPQATIIVTGCAAQTE-PATFSAMPEVDRVIGNTEKMQPATWAAMAPDLIGE 110

Query: 143 ARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
               +RV VD   SV +    L  +DG + R R   A++ +Q GCD  CTFC++PY RG 
Sbjct: 111 T---ERVQVDDILSVRETAGHL--IDG-FGRHR---AYVQVQNGCDHRCTFCIIPYGRGN 161

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
             S     VV++ R+L+D G  E+ L G ++ +W G  L         ++  L  +  L 
Sbjct: 162 SRSVPAGVVVEQIRRLVDRGFAEVVLTGVDLTSW-GADLPAAPRLGDLVMRILRLVPDLA 220

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           RLR ++    +  + L+ A      LMP+LHL +Q G D ILK M RRH   +  +  + 
Sbjct: 221 RLRISSIDSIEADEALMGAIATEPRLMPHLHLSLQHGDDLILKRMKRRHLRDDAIRFCEE 280

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
            R +RPDI   +D I GFP ET+  F  ++ LV++ G      F +SPR GTP + M  Q
Sbjct: 281 ARRLRPDIVFGADIIAGFPTETEAAFANSLKLVEECGLTFLHVFPFSPRKGTPAARM-PQ 339

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           +   V  ER   L+     + ++  +   G+   VL+E      G  +GR+     V   
Sbjct: 340 LAGPVIRERAAQLRALGEARLLAHLEGERGRTHRVLME------GPRLGRTEQFTEVAF- 392

Query: 442 SKNHNIGDIIKVRIT 456
           + +   G I+   +T
Sbjct: 393 AADQPEGRILSATVT 407


>gi|255080118|ref|XP_002503639.1| predicted protein [Micromonas sp. RCC299]
 gi|226518906|gb|ACO64897.1| predicted protein [Micromonas sp. RCC299]
          Length = 456

 Score =  171 bits (434), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 125/421 (29%), Positives = 210/421 (49%), Gaps = 33/421 (7%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N  D   M    F+ G++ ++  +DAD I++NTC   E A  +    +     +
Sbjct: 3   SLGCPKNTVDGEVMLGDLFANGFDIIDEHEDADAIIVNTCGFVEDAKNESVDAILAAAAM 62

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
           K  + + G    V+V GC+AQ   EE+    P V+VV+G + Y  LP  L     G+++ 
Sbjct: 63  KAEQEQGGKKKKVIVTGCLAQRYAEELADEMPEVDVVMGFENYKDLPNTL-----GEQLG 117

Query: 151 DTDYSVEDKFERLSIVDGGYN--------RKRGVT---AFLTIQEGCDKFCTFCVVPYTR 199
               +  D  +R  +  G  +        RKR      A+L + EGCD  CTFC +P  R
Sbjct: 118 VETGAAADGAKRGRVRVGTASPPFRPEALRKRLTPQHYAYLRVAEGCDHKCTFCAIPGFR 177

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG--KGLDGEKCTFSDLLYSLSEI 257
           G   S+    +++EA+ L D G  E+ L+ ++ N W    K  DG     ++LL +L+ I
Sbjct: 178 GKFRSKPWDPIIEEAKALADTGARELCLIAEDTNQWGMDLKASDGRG--LAELLEALAVI 235

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN---RRHTAYE 314
            G+  +R   ++P   SD LI A  D+  +  Y+ +P+Q  ++  L  MN   R+HT   
Sbjct: 236 DGVEWIRILYAYPSYFSDPLIDAIADIPQVAKYIDIPLQHITNLSLLRMNRPPRQHTEDL 295

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
             ++ DRI    P +A+ + FI GFPGET+++    M    +  + +  +F YS   GTP
Sbjct: 296 LYKLRDRI----PGLALRTTFISGFPGETEEEHEDLMRFCREFKFERLGAFAYSEEDGTP 351

Query: 375 GSNMLEQVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR 431
            +   +QV++ V   + ++L+  Q+++ E    F  + VG+ ++V+I+ +  E     GR
Sbjct: 352 AATYPDQVEQAVRDLRRDQLIAQQQQISE---DFAASRVGREVDVIIDGYNPEFDAWTGR 408

Query: 432 S 432
           +
Sbjct: 409 T 409


>gi|229588740|ref|YP_002870859.1| ribosomal protein S12 methylthiotransferase [Pseudomonas
           fluorescens SBW25]
 gi|229360606|emb|CAY47463.1| conserved hypothetical protein [Pseudomonas fluorescens SBW25]
          Length = 446

 Score =  171 bits (434), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 139/469 (29%), Positives = 228/469 (48%), Gaps = 61/469 (13%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  FV S GC   + DS R+      +GY+ V++  DAD++V+NTC   + A  +    
Sbjct: 10  PKVGFV-SLGCPKALVDSERILTQLRMEGYDVVSTYQDADVVVVNTCGFIDSAKAESLEV 68

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G         IKE G   V+V GC+   EG  I    P V  V GPQ Y          
Sbjct: 69  IGE-------AIKENGK--VIVTGCMGVEEGA-IRNVHPSVLAVTGPQQY---------- 108

Query: 144 RFGKRVVDTDYSV----EDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
              ++VV+  + V    +D    + +V   G        A+L I EGC+  C+FC++P  
Sbjct: 109 ---EQVVNAVHDVVPPRQDHNPLIDLVPPQGIKLTPRHYAYLKISEGCNHSCSFCIIPSM 165

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTF 247
           RG  +SR +  V+DEA++L+ +GV E+ ++ Q+ +A           W G  +   K   
Sbjct: 166 RGKLVSRPVGDVLDEAQRLVKSGVKELLVISQDTSAYGVDVKYRTGFWNGAPV---KTRM 222

Query: 248 SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307
           ++L  +LS +   VRL Y   +P       + A G    ++PYL +P Q  S ++LK+M 
Sbjct: 223 TELCEALSSLGVWVRLHYVYPYPHVDELIPLMAAGK---ILPYLDIPFQHASPKVLKAMK 279

Query: 308 RRHTAYEYRQI--IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           R   A+E + +  I   R + P++ I S FIVGFPGET++DF+  +D + +    +   F
Sbjct: 280 R--PAFEDKTLARIKNWREICPELIIRSTFIVGFPGETEEDFQYLLDWLTEAQLDRVGCF 337

Query: 366 KYSPRLGTPGSNM-LEQVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKH 421
           +YSP  G P + + L  V ++VK    ER +  Q+ +   ++      +G+ IEVLI++ 
Sbjct: 338 QYSPVEGAPANLLDLAVVPDDVKQDRWERFMAHQQAISSARLQLR---IGKEIEVLIDEV 394

Query: 422 GKEK--GKLVGRSPWLQSVVL--NSKNHNIGDIIKVRITDVKISTLYGE 466
            ++   G+    +P +   V   ++     GD +   +TD     L+ E
Sbjct: 395 DEQGAVGRCFFDAPEIDGNVFIDDASGLKPGDKVWCTVTDADEYDLWAE 443


>gi|242280283|ref|YP_002992412.1| MiaB-like tRNA modifying enzyme [Desulfovibrio salexigens DSM 2638]
 gi|242123177|gb|ACS80873.1| MiaB-like tRNA modifying enzyme [Desulfovibrio salexigens DSM 2638]
          Length = 429

 Score =  171 bits (434), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 117/391 (29%), Positives = 204/391 (52%), Gaps = 33/391 (8%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           V ++F++ + GC++N Y+S  + + +   GYE+  +  +A  I++N+C + + A   +  
Sbjct: 4   VMKKFWITTLGCKINQYESESVRERWLRMGYEQAENDAEAHEIIINSCAVTQAALRDLRQ 63

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +  I    N R  EG    +++AGC AQ   +E+     + +V+  PQ   R  ELL  
Sbjct: 64  TVRGI----NRRNPEGK---IIIAGCAAQVFAKELAELPGVADVI--PQE--RKFELL-- 110

Query: 143 ARFGKRVVDTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
                ++ D   S +D   F+   I D  Y R R V   + +Q+GC   CT+C+VP TRG
Sbjct: 111 -----KLEDGPESTDDTTIFQPFEIDD--YERSRAV---VKVQDGCSHRCTYCIVPITRG 160

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS----- 255
             +SR++  V+ E  +L+  G  E+ + G N++ + G+  + EK  F DL+  +      
Sbjct: 161 PSVSRAVDDVLKEISRLLAAGFREMIISGINLSHY-GREFE-EKIDFWDLMERIEDEFGQ 218

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
           E  G  RLR ++  P  + +  ++      ++ P LHL +QSG  ++LK M R H   E 
Sbjct: 219 EWGGRARLRISSLEPGQLKERALEIFAKSKLICPQLHLSLQSGDRQVLKRMGRGHYKPED 278

Query: 316 RQI-IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
             + +D+++ V P   + +D + GFPGET+++F  T++   K+  + A  F YS R GT 
Sbjct: 279 VLVFLDKLKEVWPVFGLGADILTGFPGETEEEFNNTLEFCRKLPLSYAHVFPYSIRPGTA 338

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSF 405
            ++M  Q+D   K ER   L++ + E++  F
Sbjct: 339 AASMKGQLDGPTKKERGRILRELVEEKKQEF 369


>gi|315231263|ref|YP_004071699.1| tRNA N6-threonylcarbamoyladenosine 2-methylthiotransferase
           [Thermococcus barophilus MP]
 gi|315184291|gb|ADT84476.1| tRNA N6-threonylcarbamoyladenosine 2-methylthiotransferase
           [Thermococcus barophilus MP]
          Length = 424

 Score =  171 bits (434), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 134/449 (29%), Positives = 225/449 (50%), Gaps = 36/449 (8%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R  +++YGC  N  D+  ME +  + GYE V+ +D AD +++NTC +++           
Sbjct: 2   RVHIETYGCTRNKADAEIMEALLVNAGYEIVD-LDSADYVIVNTCAVKDPT--------- 51

Query: 86  RIRNLKNSRIKEGGDL--LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
              N    RIKE  D    V+V GC+     E I  R   V+ ++G ++  R+ E +E A
Sbjct: 52  --ENHMRKRIKELLDAGKKVIVTGCLPHINIEAIDER---VSAILGVKSINRITEAIELA 106

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             G ++VD +    DK E   +       K  V   + I EGC   CT+C   + RGI  
Sbjct: 107 ERGVKLVDVEQRGIDKLELPRM------WKSKVVFVVPISEGCLNACTYCATRFARGILK 160

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           S S  ++V   ++ +  G  EI L  ++   +   G D      ++LL  L+ I+G  R+
Sbjct: 161 SYSPEKIVRWVKEALAKGYKEIQLSSEDTGCY---GFDI-GTNLAELLDELTSIEGEFRI 216

Query: 264 RYTTSHPRDMS---DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
           R    +P  +    D LI A+ D + +  +LHLPVQSG + IL+ M R +T  ++  I+ 
Sbjct: 217 RVGMMNPNHVIKFLDELIDAYKD-EKIYKFLHLPVQSGDNEILRKMGRTYTVEDFETIVK 275

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
             R   P++ +++D IVGFPGE+++ F+ T++L+ ++   +    ++SPR GT  + M +
Sbjct: 276 AFRKEFPELNLNTDIIVGFPGESEEAFQNTVELIKRVKPDKINVSRFSPRPGTLAARMPD 335

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKH-GKEKGKLVGRSPWLQSVV 439
           Q+      ER   L +         N   VG+  E+L+  H   +KG + GR+   + ++
Sbjct: 336 QIVGWRAKERSRYLHRLRLAISYEINQKYVGR--ELLVLTHGEGKKGGVEGRTMNYKEII 393

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
           L      IG+ +KV++T    + L GEL+
Sbjct: 394 L--PEAPIGEFVKVKVTKATATYLMGELI 420


>gi|182680305|ref|YP_001834451.1| MiaB-like tRNA modifying enzyme [Beijerinckia indica subsp. indica
           ATCC 9039]
 gi|182636188|gb|ACB96962.1| MiaB-like tRNA modifying enzyme [Beijerinckia indica subsp. indica
           ATCC 9039]
          Length = 435

 Score =  171 bits (434), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 133/442 (30%), Positives = 204/442 (46%), Gaps = 36/442 (8%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S+GC++N  ++  M     + G+E        +L+++N+C +  +A  +    + R++  
Sbjct: 14  SFGCRLNFVEAETMRRAAKAAGFE--------NLVIVNSCAVTAEATRQTRQAIRRVK-- 63

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE-RARFGKRV 149
                +E  +  +VV GC A+ E E   R  P V +V+G          L  + +     
Sbjct: 64  -----REQPEAKIVVTGCAAETEPER-FRAMPEVGLVLGNARKTEAATWLALKHQASDLP 117

Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209
           +D  ++      RLS   G  +  R   AFL +Q GCD  C+FC++P  RG   S  L  
Sbjct: 118 LDAPHAEALHRPRLSPQAGTEDHTR---AFLAVQNGCDHRCSFCIIPQGRGSSRSVPLDD 174

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS-LSEIKGLVRLRYTTS 268
            +  AR L   G  EI L G ++ ++     D  +    DL+   L E+  L RLR ++ 
Sbjct: 175 AIAMARDLAARGFLEIVLTGVDLTSYGSDLPDVPR--LGDLVRRILREVPSLPRLRLSSI 232

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
              +    L++   + + LMP LHL +Q+GSD ILK M RRH   +  +    +R +RPD
Sbjct: 233 DCIEADPVLVRCFAEEERLMPSLHLSLQAGSDLILKRMQRRHGRTDAIRFCAELRRLRPD 292

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           IA S+D I GFP ET+  F  T+DLVD  G      F +S R GTP + M   V   +  
Sbjct: 293 IAFSADLIAGFPTETEAQFTDTLDLVDACGLTSLHVFPFSARPGTPAARM-PAVAPTIVK 351

Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNI- 447
           ER   L++K      S     VG    +L E+ G      + R+     V L    HNI 
Sbjct: 352 ERARRLREKGTLALASHLGTHVGHRRRLLSERGG------LARTEDFAPVRL----HNIA 401

Query: 448 -GDIIKVRITDVKISTLYGELV 468
            G +++  IT      L G +V
Sbjct: 402 PGRLVEALITGSDGEVLQGAIV 423


>gi|330807856|ref|YP_004352318.1| tRNA modifying protein [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327375964|gb|AEA67314.1| Conserved hypothetical protein; putative tRNA modifying protein
           [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
          Length = 446

 Score =  171 bits (433), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 138/471 (29%), Positives = 227/471 (48%), Gaps = 61/471 (12%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  FV S GC   + DS R+      +GY+ V++  DAD++V+NTC   + A  +    
Sbjct: 10  PKVGFV-SLGCPKALVDSERILTQLRMEGYDVVSTYQDADVVVVNTCGFIDSAKAESLEV 68

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G         IKE G   V+V GC+   EG  I    P V  V GPQ Y          
Sbjct: 69  IGEA-------IKENGK--VIVTGCMGVEEGN-IRNVHPSVLSVTGPQQY---------- 108

Query: 144 RFGKRVVDTDYSV----EDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
              ++VV+  + V    +D    + +V   G        A+L I EGC+  C+FC++P  
Sbjct: 109 ---EQVVNAVHDVVPPRQDHNPLIDLVPPQGIKLTPRHYAYLKISEGCNHSCSFCIIPSM 165

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTF 247
           RG  +SR +  V+DEA++L+  GV E+ ++ Q+ +A           W G  +   K   
Sbjct: 166 RGKLVSRPVGDVLDEAQRLVKAGVKELLVISQDTSAYGVDVKYRTGFWNGAPV---KTRM 222

Query: 248 SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307
           ++L  +LS +   VRL Y   +P       + A G    ++PYL +P Q  S ++LK+M 
Sbjct: 223 TELCEALSTLGVWVRLHYVYPYPHVDELIPLMAAGK---ILPYLDIPFQHASPKVLKAMK 279

Query: 308 RRHTAYEYRQI--IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           R   A+E + +  I   R + PD+ I S FIVGFPGET++DF+  +D + +    +   F
Sbjct: 280 R--PAFEDKTLARIKNWREICPDLIIRSTFIVGFPGETEEDFQYLLDWLTEAQLDRVGCF 337

Query: 366 KYSPRLGTPGSNMLEQVDENV----KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKH 421
           +YSP  G P +++   V  +     + ER +  Q+ +   ++      +G+ IEVL+++ 
Sbjct: 338 QYSPVEGAPANDLDLDVVPDDVKQDRWERFMAHQQAISSARLQMR---IGREIEVLVDEV 394

Query: 422 GKEK--GKLVGRSPWLQSVVL--NSKNHNIGDIIKVRITDVKISTLYGELV 468
            ++   G+    +P +   V   N  N   GD +  ++TD     L+ E +
Sbjct: 395 DEQGAVGRCFFDAPEIDGNVFIDNGSNLKPGDKVWCKVTDADEYDLWAEQI 445


>gi|229815230|ref|ZP_04445566.1| hypothetical protein COLINT_02276 [Collinsella intestinalis DSM
           13280]
 gi|229809240|gb|EEP45006.1| hypothetical protein COLINT_02276 [Collinsella intestinalis DSM
           13280]
          Length = 427

 Score =  171 bits (433), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 124/429 (28%), Positives = 204/429 (47%), Gaps = 27/429 (6%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V + GC++N  +S R+       G+  V+  D+AD+IV+NTC +  +A  K    +    
Sbjct: 8   VVNLGCRVNRVESDRITSDLVGAGFSLVD-QDEADIIVINTCAVTGEAESKTRKAVRHAL 66

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
            L    I       VVV GCV      E+   SP V            P  ++ AR    
Sbjct: 67  GLPREPI-------VVVTGCVVNLHPSELTDLSPRV---------IAQPSKIDVARTAAD 110

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
                    +  E   + D     + GV     +Q+GC+  C++C+V   RG E S  ++
Sbjct: 111 AAGLPARTVNLGEGHDLADLLGRSRLGVK----VQDGCNNRCSYCIVWKARGPERSVPVA 166

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
            V+++ R+    G+ E+ L G N+ A+ G           +LL  + E   + ++R ++ 
Sbjct: 167 SVLEQVRRAERAGIPEVVLTGVNLGAYDGVDASDSHVEIDELLDIILEQTNIPQVRLSSL 226

Query: 269 HPRDMSDCLIKAH-GDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
            P D+ D LI A     + + P+LHLP+QSG    L+ MNR +TA +Y  ++DRIR+  P
Sbjct: 227 EPMDVHDRLIDAMVAGGERVAPFLHLPLQSGCTATLERMNRPYTAEQYEAMVDRIRTKLP 286

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
           + AIS D I GFPGETD++F  +  L +++G+++   F+YS R GTP +    QV   V 
Sbjct: 287 NAAISCDIIAGFPGETDEEFAESRALCERVGFSRMHVFRYSARPGTPAATAPGQVAPEVM 346

Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNI 447
           A R   L+        +   A +G     ++E     +G L     + + +V ++     
Sbjct: 347 AARSSELRHVAESTSQADARARIGACETAVLEF--GNRGTL---GSFHRVIVDDAGTDRT 401

Query: 448 GDIIKVRIT 456
           G +++V+IT
Sbjct: 402 GQLVRVKIT 410


>gi|157411395|gb|ABV54352.1| putative FeS oxidoreductase [Pseudomonas stutzeri]
          Length = 441

 Score =  171 bits (433), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 141/471 (29%), Positives = 227/471 (48%), Gaps = 59/471 (12%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           VP   FV S GC     DS R+      +GY+ V S +DAD++V+NTC   + A  +   
Sbjct: 5   VPSVGFV-SLGCPKATVDSERILTQLRMEGYQIVPSYEDADVVVVNTCGFIDSAKAESLD 63

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +G         I E G   V+V GC+   E   I    P V  V GPQ Y ++   +  
Sbjct: 64  AIGE-------AIAENGK--VIVTGCMGVDENN-IRGVHPSVLAVTGPQQYEQVVNAVHE 113

Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
                       S+E D F  L    G     R   A+L I EGC+  C+FC++P  RG 
Sbjct: 114 V--------VPPSIEHDPFVDLVPPQGIKLTPRHY-AYLKISEGCNHSCSFCIIPSMRGK 164

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDL 250
            +SR +  V+ EA +L+  GV EI ++ Q+ +A           W G+ +   K    +L
Sbjct: 165 LVSRPVGDVLSEAERLVKAGVKEILVISQDTSAYGVDLKYKLDFWDGQPV---KTRMLEL 221

Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
             +L ++   VRL Y   +P       + A G    ++PYL +P Q  S ++LK+M R  
Sbjct: 222 CEALGKMGVWVRLHYVYPYPNVDDVIPLMAAGK---ILPYLDIPFQHASPKVLKAMKR-- 276

Query: 311 TAYEYRQI--IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
            A+E + +  I + R + P++ I S FIVGFPGET++DF+  +D + +    +   F+YS
Sbjct: 277 PAFEDKTLARIQKWREICPELTIRSTFIVGFPGETEEDFQYLLDWLTEAQLDRVGCFQYS 336

Query: 369 PRLGTPGSNM-LEQVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE 424
           P  G P   M LE V + +K    +R +  Q+ +   ++      VG+ ++VLI++  ++
Sbjct: 337 PVDGAPAEAMGLEPVPDEIKQDRWDRFMAHQQAISAARLQLK---VGREMDVLIDEVDED 393

Query: 425 KGKLVGRSPWLQS-------VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
               +GRS W  +        V +++    GD ++VR+T+     L+ E++
Sbjct: 394 GA--IGRS-WADAPEIDGMVYVDSAQPLQPGDKVRVRVTNADEYDLWAEVI 441


>gi|15836008|ref|NP_300532.1| hypothetical protein CPj0477 [Chlamydophila pneumoniae J138]
 gi|16752565|ref|NP_444827.1| hypothetical protein CP0277 [Chlamydophila pneumoniae AR39]
 gi|33241829|ref|NP_876770.1| hypothetical protein CpB0496 [Chlamydophila pneumoniae TW-183]
 gi|14916790|sp|Q9Z874|Y477_CHLPN RecName: Full=Putative methylthiotransferase
           CPn_0477/CP_0277/CPj0477/CpB0496
 gi|7189201|gb|AAF38135.1| conserved hypothetical protein [Chlamydophila pneumoniae AR39]
 gi|8978847|dbj|BAA98683.1| hypothetical protein [Chlamydophila pneumoniae J138]
 gi|33236338|gb|AAP98427.1| hypothetical protein CpB0496 [Chlamydophila pneumoniae TW-183]
          Length = 421

 Score =  171 bits (433), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 122/443 (27%), Positives = 219/443 (49%), Gaps = 44/443 (9%)

Query: 33  GCQMNVYDSLRMEDMFFSQGYERV-NSMDDADLIVLNTCHIREKAAEKVYSFLGR--IRN 89
           GC++N Y+     D     GY+ V +S   ADL ++NTC +   A        GR  +R 
Sbjct: 16  GCRVNQYEVQAYRDQLTILGYQEVLDSEIPADLCIINTCAVTASAESS-----GRHAVRQ 70

Query: 90  LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149
           L     ++     +VV GC+ +++ E          +V   +                R+
Sbjct: 71  L----CRQNPTAHIVVTGCLGESDKEFFASLDRQCTLVSNKEK--------------SRL 112

Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209
           ++  +S +  F    I    ++ +    AF+ +Q+GC+ FC++C++PY RG  +SR   +
Sbjct: 113 IEKIFSYDTTFPEFKI----HSFEGKSRAFIKVQDGCNSFCSYCIIPYLRGRSVSRPAEK 168

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSH 269
           ++ E   ++D G  E+ + G NV    G   DGE+ + + L+  + +I G+ R+R ++  
Sbjct: 169 ILAEIAGVVDQGYREVVIAGINV----GDYCDGER-SLASLIEQVDQIPGIERIRISSID 223

Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329
           P D+++ L +A        P  HL +QSGS+ ILK MNR+++  ++   +++ R+  P  
Sbjct: 224 PDDITEDLHRAITSSRHTCPSSHLVLQSGSNSILKRMNRKYSRGDFLDCVEKFRASDPRY 283

Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAE 389
           A ++D IVGFPGE+D DF  T+ +++ +G+ +  SF +S R  T       Q+   V  E
Sbjct: 284 AFTTDVIVGFPGESDQDFEDTLRIIEDVGFIKVHSFPFSARRRTKAYTFDNQIPNQVIYE 343

Query: 390 R---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH- 445
           R   L  + K++ ++++      +G+  EVL+EK   +     G SP+ + V        
Sbjct: 344 RKKYLAEVAKRVGQKEMMKR---LGETTEVLVEKVTGQVA--TGHSPYFEKVSFPVVGTV 398

Query: 446 NIGDIIKVRITDVKISTLYGELV 468
            I  ++ VR+  V+   L GE+V
Sbjct: 399 AINTLVSVRLDRVEEEGLIGEIV 421


>gi|154244369|ref|YP_001415327.1| MiaB-like tRNA modifying enzyme [Xanthobacter autotrophicus Py2]
 gi|154158454|gb|ABS65670.1| MiaB-like tRNA modifying enzyme [Xanthobacter autotrophicus Py2]
          Length = 437

 Score =  171 bits (433), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 132/416 (31%), Positives = 201/416 (48%), Gaps = 57/416 (13%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V S+GC++N  +   +     ++G ER         +V NTC +  +A  +         
Sbjct: 22  VVSFGCRLNALEGDGIARAATAEGLERT--------LVFNTCAVTGEAVRQARQ------ 67

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR---- 144
                  +E  DL V+V GC AQ + +   R    V++V+G      LP      R    
Sbjct: 68  -AIRRARREDPDLRVIVTGCAAQTDPQAFARMDE-VDLVLG-NADKTLPAAWATTRAALD 124

Query: 145 FG----KRVVDTDYS--------VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTF 192
           FG    ++V   D S        + D+FE       G+ R     AF+ +Q GCD  CTF
Sbjct: 125 FGIGAEQKVRVQDISAVRAATPHLADRFE-------GHTR-----AFVEVQNGCDHRCTF 172

Query: 193 CVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLY 252
           C++P+ RG   S  +  VVD+ R+L+ NG  E+ L G ++ A+ G  L G   T   L+ 
Sbjct: 173 CIIPFGRGPSRSVPMGAVVDQVRRLVANGHREVVLTGVDLTAY-GADLPGAP-TLGRLVR 230

Query: 253 S-LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
           S L+ +  L RLR ++    +  D L++A  + + LMP+LHL +Q+G D ILK M RRH+
Sbjct: 231 SVLTGVPDLPRLRLSSIDAVEADDELMRALAEEERLMPHLHLSLQAGDDLILKRMKRRHS 290

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
             +    I  +R  RPD+ + +D I GFP ET++  RAT   +D+ G A    F +S R 
Sbjct: 291 RAQALDFISALRRARPDVVLGADIIAGFPTETEEQARATRAFLDEAGLAFVHVFPFSARP 350

Query: 372 GTPGSNMLEQVDENVKAERLLCLQKKLREQQVSF----NDACVGQIIEVLIEKHGK 423
           GT  + M  Q+   V AER     ++LRE           + VG+  +VL+E  G+
Sbjct: 351 GTAAARM-PQLPAGVVAER----ARRLRETAADLLRRHLASEVGRRRQVLVEAGGR 401


>gi|301064131|ref|ZP_07204578.1| ribosomal protein S12 methylthiotransferase RimO [delta
           proteobacterium NaphS2]
 gi|300441751|gb|EFK06069.1| ribosomal protein S12 methylthiotransferase RimO [delta
           proteobacterium NaphS2]
          Length = 447

 Score =  171 bits (433), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 136/454 (29%), Positives = 220/454 (48%), Gaps = 26/454 (5%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           FF+ S GC  N  DS  M  +    GYE V+ ++ A  +V+NTC   ++A ++    +  
Sbjct: 8   FFI-SLGCAKNRVDSEHMLGILKRDGYEPVDEIEKAGCVVINTCGFLQEAVQEAIDTI-- 64

Query: 87  IRNLKNSRIKEGGDLL-VVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
              L  +R K+ G L  +VVAGC  Q  G ++ +  P V+  +G    +R+ ++LE    
Sbjct: 65  ---LDAARFKKRGTLKKLVVAGCFVQRYGYKLRKEIPEVDGWLGTGEIHRIADVLEGDSE 121

Query: 146 GKRVVDTDYSVEDKFER-LSIVDGGYNRKRGV---TAFLTIQEGCDKFCTFCVVPYTRGI 201
           G+       SV     R +   D    R R     TA+L I EGC   C++C++P  RG 
Sbjct: 122 GE-------SVPMHISRPVFPADHCLPRIRTTPFYTAYLRIAEGCANRCSYCLIPKLRGP 174

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
             SR++  ++ EA ++   GV EI L+ Q+ + + G+ + GE+   S LL  LS I+G  
Sbjct: 175 FRSRAMDALLLEASEMASEGVREINLVAQDTSRY-GEDIYGERRIMS-LLEGLSLIEGFQ 232

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
            +R    HP  +++  +    + + + PYL LP Q     ILK+M R         ++  
Sbjct: 233 WIRLLYFHPARLTETFLDFIDENERIAPYLDLPFQHCHPAILKAMRRDPENNTPWDLMTM 292

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           IR+ +  I I +  +VGFPGET++ F +  + V+   +     F +SP  GT    + E 
Sbjct: 293 IRNRKQRIHIRTSLMVGFPGETEEMFESLCNFVEMARFDHLGVFVFSPEEGTSAFRLPET 352

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-----KGKLVGRSPWLQ 436
           V   +  ER   L K         N A VG+++ VLIE    E     +G+  G +P + 
Sbjct: 353 VAHEIALERQKMLMKLQAGISKRLNQAKVGEVLPVLIEGESTETDLLLEGRTAGMAPDVD 412

Query: 437 S-VVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
           S V++N      G+I+ V IT+     L G +++
Sbjct: 413 SRVLINDGEGRAGEIMPVLITEAHEYDLVGRILM 446


>gi|289192765|ref|YP_003458706.1| MiaB-like tRNA modifying enzyme [Methanocaldococcus sp. FS406-22]
 gi|288939215|gb|ADC69970.1| MiaB-like tRNA modifying enzyme [Methanocaldococcus sp. FS406-22]
          Length = 415

 Score =  171 bits (433), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 129/458 (28%), Positives = 229/458 (50%), Gaps = 59/458 (12%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + +V+ YGC +N  D+  +++     G+E    +++A++ ++NTC +R +   ++   + 
Sbjct: 2   KVYVEGYGCVLNTADTEIIKNSLREHGFEITEDLEEANIAIINTCVVRLETENRMIYRIN 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGE-----------EILRRSPIVNVVVGPQTYY 134
            ++NL            VV+AGC+ +A  E           E  R   I+   +  + +Y
Sbjct: 62  ELKNLGKE---------VVIAGCLPKALKEKVKGFLHIYPREAHRAGEILKDYI--EKHY 110

Query: 135 RLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCV 194
           R+P + E         D + ++  K + L+           + + L I EGC   C++C+
Sbjct: 111 RMPYIEE---------DINKTLYKKLDYLT---------PSLISPLPICEGCIGNCSYCI 152

Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYS 253
           V   RG  IS    ++V++A++LI+ G   + +  Q+   +   G D G+    ++LL  
Sbjct: 153 VKIARGNLISYPREKIVNKAKELINKGAKCLLITAQDTACY---GFDIGD--NLANLLND 207

Query: 254 LSEIKGLVRLRYTTSHPRDMS---DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
           L++I+G   +R    H ++     D LI+ + D D +  +LHLP+QSG D ILK M R +
Sbjct: 208 LTQIEGEFIMRVGMMHAKNAELILDELIEVYKD-DKVGKFLHLPLQSGDDEILKRMKRGY 266

Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370
           T  E++ I++  R    ++  ++D IVGFPGET++ F+ T++++ ++        KYS R
Sbjct: 267 TVDEFKDIVNEFRRKIKNLCFTTDIIVGFPGETEEQFQNTLEVLKELKPDYIHGAKYSQR 326

Query: 371 LGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG 430
            GT  + M +QVD  ++ +R   L K  RE     N   VG+ + VLI   GK      G
Sbjct: 327 KGTEAAKM-KQVDTKIRKQRSEILDKLRRELSYLNNKKYVGKTMRVLILDEGK------G 379

Query: 431 RSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            +   +  V+  +   IG+  KV+ITD K   L GE++
Sbjct: 380 YTDNFK--VVKFEGGEIGEFRKVKITDAKTFGLRGEII 415


>gi|291546206|emb|CBL19314.1| SSU ribosomal protein S12P methylthiotransferase [Ruminococcus sp.
           SR1/5]
          Length = 365

 Score =  171 bits (433), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 117/362 (32%), Positives = 187/362 (51%), Gaps = 28/362 (7%)

Query: 109 VAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG---KRVVDTDYSVEDKFERLSI 165
           +AQ   +EI+   P V+ V+G  +Y  + + LE A  G   +   D DY  +   +R+  
Sbjct: 1   MAQRYQKEIIEEVPEVDAVLGTTSYGDIVKALEEAVAGNHFEEFRDIDYLPDTGSKRVLT 60

Query: 166 VDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEI 225
             G +        +L I EGCDK CT+C++P  RG   S  + +++ +A  + + GV E+
Sbjct: 61  TGGHF-------GYLKIAEGCDKHCTYCIIPKLRGKFRSVPMERLIAQAEDMAEQGVKEL 113

Query: 226 TLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLD 285
            L+ Q    + GK L G+K +   LL  L EI+G+  +R    +P ++ D LI+   D  
Sbjct: 114 ILVAQETTVY-GKDLYGKK-SLHILLKKLCEIRGIRWIRILYCYPEEIYDELIETIRDEK 171

Query: 286 VLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDD 345
            +  YL +P+Q  SDRILK M RR +  E   I+ ++R   PDI + +  I GFPGET++
Sbjct: 172 KICHYLDIPIQHASDRILKRMGRRTSKQELIDIVGKLRKEIPDIVLRTTLITGFPGETEE 231

Query: 346 DFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER---LLCLQKKLREQQ 402
           D     + VD++ + +   F YSP   TP + M +QV E VK ER   L+ LQ     Q+
Sbjct: 232 DHEELKEFVDEMEFDRLGVFTYSPEENTPAAEMADQVPEEVKEERRDELMELQ-----QE 286

Query: 403 VSFNDAC--VGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVLNSKNHNI--GDIIKVR 454
           +S++     +GQ + V+IE    ++   +GR+    P +   +       +  GD  KVR
Sbjct: 287 ISYDRGQDRIGQELLVMIEGKVADESAYIGRTYGDAPKVDGYIFVQTGELLMTGDFAKVR 346

Query: 455 IT 456
           +T
Sbjct: 347 VT 348


>gi|124006098|ref|ZP_01690934.1| conserved hypothetical protein [Microscilla marina ATCC 23134]
 gi|123988275|gb|EAY27928.1| conserved hypothetical protein [Microscilla marina ATCC 23134]
          Length = 438

 Score =  171 bits (433), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 126/432 (29%), Positives = 214/432 (49%), Gaps = 22/432 (5%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N  ++  +   F S+GY++V+  D  D+ ++NTC +   A +K        R +
Sbjct: 8   TLGCKLNFSETSTITRQFESRGYKKVDFNDSPDIFIINTCSVTANADKKC-------RKV 60

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK--- 147
                K   D  V + GC AQ + +EI    P V+ V+G    +RL +LL    F K   
Sbjct: 61  VKEAKKISPDGYVAIIGCYAQLKPKEI-SNIPGVDAVLGASEKFRLLDLL--GTFVKPAQ 117

Query: 148 -RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
             V+  + +  D F     +    +R R    FL +Q+GC+  C+FC +P  RG   S S
Sbjct: 118 PEVLVQEVTNADTFAHSHSMG---DRTR---TFLKVQDGCNYNCSFCTIPLARGKSRSDS 171

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
           +  ++  A K+    V E+ L G N+  + G      K  F DL+ +L E+ GL R+R +
Sbjct: 172 IENIIASAHKIGQTEVKEVVLTGVNIGDF-GIQEGRRKERFIDLVKALDEVDGLERIRIS 230

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
           +  P  +S+ +I         +P+ H+P+QSGS++ILK+M RR+    Y   +++I+ + 
Sbjct: 231 SIEPNLLSNDVIAFTAQSKRFVPHFHIPLQSGSNKILKAMRRRYERGLYVDRVNKIKELM 290

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           P   I  D IVGFPGET++DF  T + ++++  +    F YS R  T    +   V +  
Sbjct: 291 PHCCIGVDVIVGFPGETEEDFLDTYNFLNELDISYLHVFTYSERANTHALEIKSVVPKEE 350

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHN 446
           +A+R   L     +++  F +  +G+   VL EK   E G++ G +     V        
Sbjct: 351 RAKRSKMLHILSDKKRRYFYEQQLGKEYTVLFEKDINE-GQMEGFTENYVRVTAKYDPLL 409

Query: 447 IGDIIKVRITDV 458
           I ++ KVR++ +
Sbjct: 410 INELKKVRLSHI 421


>gi|256045537|ref|ZP_05448420.1| MiaB-like tRNA modifying enzyme [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|256112265|ref|ZP_05453186.1| MiaB-like tRNA modifying enzyme [Brucella melitensis bv. 3 str.
           Ether]
 gi|260562847|ref|ZP_05833333.1| elongator protein 3 [Brucella melitensis bv. 1 str. 16M]
 gi|265991963|ref|ZP_06104520.1| conserved hypothetical protein [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|265993696|ref|ZP_06106253.1| conserved hypothetical protein [Brucella melitensis bv. 3 str.
           Ether]
 gi|260152863|gb|EEW87955.1| elongator protein 3 [Brucella melitensis bv. 1 str. 16M]
 gi|262764677|gb|EEZ10598.1| conserved hypothetical protein [Brucella melitensis bv. 3 str.
           Ether]
 gi|263003029|gb|EEZ15322.1| conserved hypothetical protein [Brucella melitensis bv. 1 str.
           Rev.1]
          Length = 427

 Score =  171 bits (433), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 127/432 (29%), Positives = 210/432 (48%), Gaps = 34/432 (7%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           ++GC++N Y+S  M+    + G   + ++ D   I+ NTC +  +A  +    + + R  
Sbjct: 7   TFGCRLNTYESEVMKREADAAG---LGTLKDG-AIIFNTCAVTAEAVRQARQAIRKAR-- 60

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ------TYYRLPELLERAR 144
                +E  D  ++V GC AQ E +        V++V+G +      +Y  LP+     +
Sbjct: 61  -----RENPDARIIVTGCAAQTEADNFAAMGE-VDLVLGNEEKLKSNSYRMLPDFGVN-Q 113

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
           F K  V+    V +    +  VD    R R   AF+ +Q GCD  CTFC++PY RG   S
Sbjct: 114 FEKVRVNDIMEVRETASHM--VDAIEGRAR---AFVQVQNGCDHRCTFCIIPYGRGNSRS 168

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
             +  VVD+ ++L+ NG  E+ L G ++ ++ G  L         +   L+++  L RLR
Sbjct: 169 VPMGAVVDQVKRLVGNGYAEVVLTGVDMTSY-GPDLPSNLRLGKLVKTVLAQVPDLQRLR 227

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
            ++    +  + L++A      LMP+LHL +Q+G D ILK M RRH   +  +     R+
Sbjct: 228 LSSIDSIEADEDLMEAIASEKRLMPHLHLSLQAGDDMILKRMKRRHLRDDSIRFCQTARA 287

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           +RPDI   +D I GFP ET++ F+ ++ +V++ G      F YSPR GTP + M  QV  
Sbjct: 288 LRPDIVFGADIIAGFPTETEEMFQNSLKIVEECGLTHLHVFPYSPREGTPAARM-PQVRR 346

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
            +  ER   L+ +         +A  G    +L+EK G      V R+       ++   
Sbjct: 347 EIVKERAARLRAEGDRAYEKHLNALHGTRQRLLVEKEG------VARTEGFTLAAVDQG- 399

Query: 445 HNIGDIIKVRIT 456
            N G+II+  +T
Sbjct: 400 -NAGEIIERIVT 410


>gi|163737877|ref|ZP_02145293.1| MiaB-like tRNA modifying enzyme [Phaeobacter gallaeciensis BS107]
 gi|161388493|gb|EDQ12846.1| MiaB-like tRNA modifying enzyme [Phaeobacter gallaeciensis BS107]
          Length = 421

 Score =  171 bits (433), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 117/397 (29%), Positives = 191/397 (48%), Gaps = 31/397 (7%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  M+++    G +        + +V+NTC +  +A  K    + ++R  
Sbjct: 9   TLGCRLNAYETEAMKELSQQAGLQ--------NAVVVNTCAVTAEAVRKARQEIRKLR-- 58

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVV-----VGPQTYYRL---PELLER 142
                +E  +  ++V GC AQ E E       +  V+     +  QT+ ++   P+ +  
Sbjct: 59  -----RENPEAPIIVTGCAAQTEPETFAAMDEVTQVIGNTEKMQAQTWQQIAKGPDFIGT 113

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
               K  VD   SV +    L  +DG   R R   A++ +Q GCD  CTFC++PY RG  
Sbjct: 114 TE--KVQVDDIMSVTETAGHL--IDGFGTRSR---AYVQVQNGCDHRCTFCIIPYGRGNS 166

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            S     VVD+ ++L+D G  E+ L G ++ +W G  L         ++  L  +  L R
Sbjct: 167 RSVPAGVVVDQIKRLVDRGYNEVVLTGVDLTSW-GADLPATPKLGDLVMRILKLVPDLPR 225

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LR ++    ++ D L++A      LMP+LHL +Q G D ILK M RRH   +  +  +  
Sbjct: 226 LRISSIDSIEVDDNLMQAIATEPRLMPHLHLSLQHGDDLILKRMARRHLRDDAIRFCEEA 285

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R +RP++   +D I GFP ETD  F  ++ LV          F YS R GTP + +  QV
Sbjct: 286 RKLRPEMTFGADIIAGFPTETDAHFENSLKLVSDCDLTWLHVFPYSKREGTPAARIPSQV 345

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419
           +  +  ER   L+     Q  +   A VG+  ++L+E
Sbjct: 346 NGPLIKERAARLRAAGDAQVQTHLTAAVGKAHQILME 382


>gi|17986416|ref|NP_539050.1| Fe-S oxidoreductase [Brucella melitensis bv. 1 str. 16M]
 gi|17982010|gb|AAL51314.1| fe-s oxidoreductase [Brucella melitensis bv. 1 str. 16M]
          Length = 447

 Score =  171 bits (433), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 127/432 (29%), Positives = 210/432 (48%), Gaps = 34/432 (7%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           ++GC++N Y+S  M+    + G   + ++ D   I+ NTC +  +A  +    + + R  
Sbjct: 27  TFGCRLNTYESEVMKREADAAG---LGTLKDG-AIIFNTCAVTAEAVRQARQAIRKAR-- 80

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ------TYYRLPELLERAR 144
                +E  D  ++V GC AQ E +        V++V+G +      +Y  LP+     +
Sbjct: 81  -----RENPDARIIVTGCAAQTEADNFAAMGE-VDLVLGNEEKLKSNSYRMLPDFGVN-Q 133

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
           F K  V+    V +    +  VD    R R   AF+ +Q GCD  CTFC++PY RG   S
Sbjct: 134 FEKVRVNDIMEVRETASHM--VDAIEGRAR---AFVQVQNGCDHRCTFCIIPYGRGNSRS 188

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
             +  VVD+ ++L+ NG  E+ L G ++ ++ G  L         +   L+++  L RLR
Sbjct: 189 VPMGAVVDQVKRLVGNGYAEVVLTGVDMTSY-GPDLPSNLRLGKLVKTVLAQVPDLQRLR 247

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
            ++    +  + L++A      LMP+LHL +Q+G D ILK M RRH   +  +     R+
Sbjct: 248 LSSIDSIEADEDLMEAIASEKRLMPHLHLSLQAGDDMILKRMKRRHLRDDSIRFCQTARA 307

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           +RPDI   +D I GFP ET++ F+ ++ +V++ G      F YSPR GTP + M  QV  
Sbjct: 308 LRPDIVFGADIIAGFPTETEEMFQNSLKIVEECGLTHLHVFPYSPREGTPAARM-PQVRR 366

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
            +  ER   L+ +         +A  G    +L+EK G      V R+       ++   
Sbjct: 367 EIVKERAARLRAEGDRAYEKHLNALHGTRQRLLVEKEG------VARTEGFTLAAVDQG- 419

Query: 445 HNIGDIIKVRIT 456
            N G+II+  +T
Sbjct: 420 -NAGEIIERIVT 430


>gi|254512588|ref|ZP_05124654.1| MiaB-like tRNA modifying enzyme [Rhodobacteraceae bacterium KLH11]
 gi|221532587|gb|EEE35582.1| MiaB-like tRNA modifying enzyme [Rhodobacteraceae bacterium KLH11]
          Length = 418

 Score =  171 bits (433), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 131/439 (29%), Positives = 209/439 (47%), Gaps = 38/439 (8%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P +F   + GC++N Y++  M+++    G         +D +V+NTC +  +A  K    
Sbjct: 3   PPKF--STLGCRLNAYETEAMKELSQQAGL--------SDAVVVNTCAVTAEAVRKARQE 52

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER- 142
           + R+R       +E     ++V GC AQ E +   R    V+ V+G  T   LP+  +  
Sbjct: 53  IRRLR-------RENPSARLIVTGCAAQTEPDTFARMDE-VDAVIG-NTEKMLPDTWKSM 103

Query: 143 -ARF-GKR---VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197
            A F GK     VD   SV +    L  +DG   R R   A++ +Q GCD  CTFC++PY
Sbjct: 104 AADFIGKTEAVQVDDIMSVTETAGHL--IDGFGTRSR---AYVQVQNGCDHRCTFCIIPY 158

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257
            RG   S     VVD+ ++L+D G  E+ L G ++ +W G  L  +      ++  L  +
Sbjct: 159 GRGNSRSVPAGVVVDQIKRLVDKGYNEVVLTGVDLTSW-GADLPAQPKLGDLVMRILKLV 217

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
             L RLR ++    ++ + L++A      LMP+LHL +Q G D ILK M RRH   +  +
Sbjct: 218 PELPRLRISSIDSIEVDENLMQAIATEPRLMPHLHLSLQHGDDLILKRMKRRHLRDDAIR 277

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
             +  R +RPD+   +D I GFP E+D  F  ++ LV          F YS R GTP + 
Sbjct: 278 FTEEARKLRPDMTFGADIIAGFPTESDAHFENSLKLVTDCDLTWLHVFPYSKRAGTPAAR 337

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQS 437
           + +Q++ NV  +R   L+     Q  +   A +G+   +L+E         +GR+     
Sbjct: 338 IPQQINGNVIRDRAARLRAAGEAQVQNHLAAQIGKTHRILMEN------PHMGRTEQFTE 391

Query: 438 VVLNSKNHNIGDIIKVRIT 456
           V  ++     G I+   IT
Sbjct: 392 VTFDAAQPE-GQIVTASIT 409


>gi|157825701|ref|YP_001493421.1| MiaB-like tRNA modifying enzyme [Rickettsia akari str. Hartford]
 gi|157799659|gb|ABV74913.1| MiaB-like tRNA modifying enzyme [Rickettsia akari str. Hartford]
          Length = 416

 Score =  171 bits (433), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 118/400 (29%), Positives = 200/400 (50%), Gaps = 37/400 (9%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V ++GC++N+Y+S  +       G + V         + NTC +  KAAEK      + R
Sbjct: 9   VITFGCRLNIYESEIIRKNLALSGIDNV--------AIFNTCAV-TKAAEK------QAR 53

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ-----TYYRLPELLERA 143
                  K   +L ++V GC AQ    ++    P V+ V+G +      YY++ +     
Sbjct: 54  QAIRKAKKNNPNLKIIVTGCSAQT-SPQMYGNMPEVDKVIGNEEKLLHNYYQITD----- 107

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
              K  V+   SV++    L     G +R     AF+ +Q GCD FCTFC++PY RG   
Sbjct: 108 --EKIAVNDIMSVKETVGHLVSSFDGKSR-----AFIQVQNGCDHFCTFCIIPYGRGKSR 160

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS-LSEIKGLVR 262
           S  +  + ++ + L+ NG  E+   G +V A+ G  L G   TF+ ++   L+ +  L R
Sbjct: 161 SVPIGAIAEQVKYLVLNGFKEVVFTGVDVTAY-GSDLPGSP-TFAQMIKRVLNLVPELKR 218

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LR ++    ++ D L +     + +MP+ H+ +Q+G + ILK M RRHT  +  +   ++
Sbjct: 219 LRLSSIDVAEIDDELFELIAYSERIMPHFHISLQAGDEMILKRMKRRHTRAKVIEFCRKL 278

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R++RP+++  +D I GFP ET + F  T  L+ +        F YS R GTP + M  QV
Sbjct: 279 RAIRPEVSFGADIIAGFPTETPEMFDNTRKLISEAALQYLHVFPYSEREGTPAARM-PQV 337

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422
            + ++ ER   L+++ + Q   F    +GQ +E+L+E + 
Sbjct: 338 PKTIRKERAEILRQEGQNQLSEFFKKHIGQKVELLVENNN 377


>gi|302035686|ref|YP_003796008.1| putative tRNA modifying enzyme, MiaB-like [Candidatus Nitrospira
           defluvii]
 gi|300603750|emb|CBK40082.1| putative tRNA modifying enzyme, MiaB-like [Candidatus Nitrospira
           defluvii]
          Length = 484

 Score =  171 bits (433), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 132/445 (29%), Positives = 221/445 (49%), Gaps = 39/445 (8%)

Query: 33  GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92
           GC  N  DS  M     + G++       A+++++NTC   E+A ++  + +     +++
Sbjct: 24  GCSKNQVDSEVMLGTLVAGGFQLTGDARAAEVVIINTCGFIEEAKQESINSI-----IEH 78

Query: 93  SRIKEGGDLLVVVA-GCVAQAEGEEILRRSPIVNVVVGPQTYYRLPE-----LLERARFG 146
            R+K+ G   V++A GC+AQ    E+L+  P ++ VVG   + R+ E     L  +AR  
Sbjct: 79  GRLKKSGSCRVLIAAGCLAQRYQGELLKELPELDGVVGTGEFGRIAEICRSLLAPKARQQ 138

Query: 147 KRVVDTD---YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           +  +      Y  E    RL             +A+L I EGC++ C FC +P  RG + 
Sbjct: 139 RLWIGQPPYLYDAETPRIRLGTPH---------SAYLKIAEGCNRNCAFCAIPIMRGKQR 189

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVR 262
           SR +  +V EA +L+  GV E+ L+ Q+   +   G+D G K   + LL  L  +K +  
Sbjct: 190 SRPIESIVAEAGRLVQEGVKELNLISQDTINY---GVDLGLKQGLTALLRELVTVKDVRW 246

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R    +P+ ++D L+  +     +  YL +P+Q  SD +LK M+R        Q+++RI
Sbjct: 247 IRPFYLYPQQVTDELLDLYAGEARITKYLDMPLQHISDGMLKRMHRLGDRKHVTQLVERI 306

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+  P +   + FIVGFPGETD  F      +  + + +   F YS   GT   ++  +V
Sbjct: 307 RAKIPGVFFRTAFIVGFPGETDAMFEELKQFILDMEFDRVAVFLYSDEEGTSAVDLDRKV 366

Query: 383 DENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-----GRSPW 434
           D  V  ER   LL LQ+ + E +   N A +G+ +EVL++   +E  +L+     G +P 
Sbjct: 367 DLAVMEERRNELLALQESISEAK---NRAYLGRTMEVLVDGISEESDRLLECRHEGLAPE 423

Query: 435 LQSVVLNSKN-HNIGDIIKVRITDV 458
           +  VV   +N    G+ + V ITDV
Sbjct: 424 IDGVVFCDRNAAKPGEFVSVTITDV 448


>gi|308274461|emb|CBX31060.1| hypothetical protein N47_E45720 [uncultured Desulfobacterium sp.]
          Length = 433

 Score =  171 bits (433), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 127/443 (28%), Positives = 215/443 (48%), Gaps = 24/443 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +F   + GC++N  +S  +       G+        AD+ ++NTC +  KA+ +      
Sbjct: 3   KFISTTLGCKVNQCESESISKHLVLSGWLSAEDGTGADVCIINTCTVTAKASMQS----- 57

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
             R      I+   +  ++V GC A+ E +E L++   V+ ++G +  +++  L      
Sbjct: 58  --RQAIRKAIRLNPEAKIIVTGCYAETESDE-LKKINGVHHIIGQKEKHKILSLANNCFS 114

Query: 146 GKRVVDTDYSV--EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
               +  +  +  E+ F RL  +    NR R   AFL IQ+GC+ FCT+C+VPY RG   
Sbjct: 115 DGNPMPCNDELFDENGFMRLPALHS-ENRTR---AFLKIQDGCEAFCTYCIVPYARGKSR 170

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVR 262
           S     V++  + +   G  E+ L G ++  +   GLD   K +   LL  L  +  + R
Sbjct: 171 SMPFETVIESIKNIKKAGHREVVLSGIHIGKY---GLDLSPKTSLLSLLNLLDSLDIIDR 227

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R ++  P ++   +I      D++ P+ H+P+QSG + ILK M R +T+  ++ +I  I
Sbjct: 228 IRISSIEPNELVPEIISLAAKSDIICPHFHIPLQSGDNEILKKMRRPYTSEFFKDLILNI 287

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
            +  PD AI  D + GFPGETD+ F+ T  L++ +       F +SPR  T  +NM  +V
Sbjct: 288 NNHMPDAAIGVDILAGFPGETDEAFQNTYSLINDLPVTYLHVFPFSPRKNTLAANMAGRV 347

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GRSPWLQSVVLN 441
             ++   R   L+K    ++  F    VG  I VLIE+  + +  L+ G SP    V++N
Sbjct: 348 PADIVKSRCAILRKLGSLKKAGFYKKAVGTDINVLIEEKREPQNNLLKGLSPNYIPVLIN 407

Query: 442 SKNHNIGDIIKVRITDVKISTLY 464
                  D +K  I +VKI   Y
Sbjct: 408 GD-----DCMKNSIANVKIQRAY 425


>gi|307294713|ref|ZP_07574555.1| MiaB-like tRNA modifying enzyme [Sphingobium chlorophenolicum L-1]
 gi|306879187|gb|EFN10405.1| MiaB-like tRNA modifying enzyme [Sphingobium chlorophenolicum L-1]
          Length = 443

 Score =  171 bits (433), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 118/413 (28%), Positives = 190/413 (46%), Gaps = 40/413 (9%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N+ +S  + +M   Q           DLIV+N+C +  +A  +    + R R  
Sbjct: 8   TLGCRLNIAESEAIREMAGGQD----------DLIVVNSCAVTAEAVRQTRQAIRRARRD 57

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
           +           ++V GC AQ E E     + +  V+   +     P    + + G + +
Sbjct: 58  RPD-------ARIMVTGCAAQTEPETFAAMAEVDAVIGNREKMTPSPYSSSQRKLGSQEI 110

Query: 151 DTDYSVE-DKFERLSIVDGGYNR--------------------KRGVTAFLTIQEGCDKF 189
                 E   F  ++  +G   +                         AFL +Q GCD  
Sbjct: 111 GHSVGPEIPAFAGMTNEEGAAQKVQVSDIMAVRETAPHMASAFAEHARAFLEVQNGCDHR 170

Query: 190 CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSD 249
           CTFC++PY RG   S     V+D+A+KL+D G  EI L G +V ++ G  L G       
Sbjct: 171 CTFCIIPYGRGNSRSVPAGAVIDKAKKLVDAGYREIVLTGVDVTSY-GPDLPGAPSLGLL 229

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
           +   L  + GL RLR ++    ++ + L         +MP+LHL +Q+G D ILK M RR
Sbjct: 230 IERILKGVPGLSRLRLSSLDSVEIDERLFDLLAHEPRMMPHLHLSLQAGDDMILKRMKRR 289

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369
           H+  E  +I++R+++ RPDI+I +D I GFP E +  F  ++ LV++        F YSP
Sbjct: 290 HSRAEAIRIVERLKAARPDISIGADIIAGFPTEDEAMFENSLRLVEQCAIVHGHIFPYSP 349

Query: 370 RLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422
           R GTP + M  QVD      R   L+     Q+  +  + +G    VL+E++G
Sbjct: 350 RTGTPAARM-PQVDRATIKARAARLRSACEAQREGWLRSLIGSTQSVLVERNG 401


>gi|307824406|ref|ZP_07654631.1| MiaB-like tRNA modifying enzyme YliG [Methylobacter tundripaludum
           SV96]
 gi|307734390|gb|EFO05242.1| MiaB-like tRNA modifying enzyme YliG [Methylobacter tundripaludum
           SV96]
          Length = 436

 Score =  171 bits (433), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 141/463 (30%), Positives = 214/463 (46%), Gaps = 46/463 (9%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
            PQ  F+ S GC   + DS R+     S+GY    +  DADL+V+NTC   + A E+   
Sbjct: 3   APQIGFI-SLGCPKALVDSERILTKLRSEGYTISPTYQDADLVVVNTCGFIDAAVEESLD 61

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +G         + + G   V+V GC+   E E I  R P V  V G    + L E++  
Sbjct: 62  SIGEA-------LAQNGK--VIVTGCLGSREAE-IRERHPQVLKVTG---AHALEEVV-- 106

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
                 V +      D F  L    G     R   A+L I EGC+  CTFC++P  RG  
Sbjct: 107 ----AAVHEHLPPPHDPFISLVPPQGIKLTPRHY-AYLKISEGCNHRCTFCIIPSMRGDL 161

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLL 251
           +SR +  V+ EA +L + GV E+ ++ Q+ +A           W+G+ +   +  F DL 
Sbjct: 162 VSRPVDDVMLEAERLANAGVKELLVVSQDTSAYGLDLKYQSRDWKGRSV---RTRFYDLA 218

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
            +L ++   +R+ Y   +P       + A G +   +PYL +P Q  + RILK M R   
Sbjct: 219 EALGDLGIWIRMHYVYPYPHVDEVIPLMAEGKI---LPYLDIPFQHANSRILKLMKRPAA 275

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
                + I   R + PDI + S FIVGFPGET+ +F   +D + +    +   F YSP  
Sbjct: 276 GENNLERIKAWREICPDITLRSTFIVGFPGETEQEFEQLLDFMSEAQMDRVGCFAYSPVK 335

Query: 372 GTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR 431
           G   +++ +QV E VK ERL        E   +     VG+I  VLI++  +E    V R
Sbjct: 336 GAVANDLPDQVPEEVKQERLARFMAHQAEISAARLQQRVGRIETVLIDEVVEEGA--VAR 393

Query: 432 S----PWLQ-SVVLNSKNH-NIGDIIKVRITDVKISTLYGELV 468
           S    P +   V ++   H  +GD + V + +     L+G LV
Sbjct: 394 SKADAPEIDGQVFIDGATHLKVGDFVDVELEEADEYDLWGRLV 436


>gi|296125911|ref|YP_003633163.1| MiaB-like tRNA modifying enzyme YliG [Brachyspira murdochii DSM
           12563]
 gi|296017727|gb|ADG70964.1| MiaB-like tRNA modifying enzyme YliG [Brachyspira murdochii DSM
           12563]
          Length = 440

 Score =  171 bits (433), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 134/459 (29%), Positives = 220/459 (47%), Gaps = 36/459 (7%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC-HIREKAAEKVYSF 83
           +  ++ S GC+ N  D   +  +    G+   N+ +DAD+IV+NTC  I +   E + + 
Sbjct: 2   KNIYLHSLGCEKNTVDGEHILAILQKNGFNVTNNPEDADVIVINTCAFIEDSKKESIDAI 61

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
                  K  + K      ++V+GC+++   +  L     V+  +G     ++ E + + 
Sbjct: 62  FDHSMYKKYGKCKR-----LIVSGCMSERYKDNFLDMFKEVDAAIGIHDLEKILEAVNKD 116

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            F        Y  ED  E     D   N     + ++ I +GC   C+FC +P  RG   
Sbjct: 117 GF--------YDGEDNTEYKEYGDR-INTGSKYSVYIRISDGCHANCSFCAIPGIRGDHR 167

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVR 262
           SR +  +V EA     NG  EI L+ Q    +   G D  ++    DLL  LS+I+G+  
Sbjct: 168 SRKIEDIVKEAENYARNGAKEINLIAQETTYY---GHDIYKRLALPDLLKELSKIEGIEW 224

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE-YRQIIDR 321
           +R    +P  +++ +IKA   +D ++PY  +P+Q   + ILK MNR   AY+ YR +I+R
Sbjct: 225 IRVLYQNPVVLNNDIIKAFFTIDKVVPYFDIPLQHVDEEILKDMNRGKRAYKFYRNMINR 284

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE- 380
           IRS   +  I +  IVGFPGET + F+  +  V      +   F YS    T    + + 
Sbjct: 285 IRSYDENAVIRTSLIVGFPGETKESFKKLIKFVRSAKIDRVGVFTYSEEENTKALTIDKP 344

Query: 381 QVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQS 437
           ++  N K    ERL+    ++ E+++   +  +G+ I+VLIE+  ++  K +GRS +   
Sbjct: 345 KISRNKKMMLRERLMRAAIEVSEERL---ERFIGKTIDVLIEEK-EDDNKFIGRSKYDAP 400

Query: 438 ------VVLNSKNH--NIGDIIKVRITDVKISTLYGELV 468
                  V N  N+  NIGDI+KV IT      L G+LV
Sbjct: 401 EVDGCVEVYNENNYDINIGDIVKVNITHHTEYDLIGDLV 439


>gi|206890774|ref|YP_002248696.1| hypothetical protein THEYE_A0857 [Thermodesulfovibrio yellowstonii
           DSM 11347]
 gi|238055293|sp|B5YKD1|RIMO_THEYD RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|206742712|gb|ACI21769.1| conserved hypothetical protein [Thermodesulfovibrio yellowstonii
           DSM 11347]
          Length = 425

 Score =  171 bits (432), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 116/437 (26%), Positives = 211/437 (48%), Gaps = 28/437 (6%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + F V + GC  N  DS  + D    +G+  V     AD + +NTC     A E+    +
Sbjct: 2   KNFTVITLGCPKNTVDSRHLIDALTKEGFYYVEEFKKADFVFINTCCFINDAKEES---I 58

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             I      +I    D  ++V GC+++  G+E+ +  P ++ V G     ++ + +++  
Sbjct: 59  DEILTAAKFKI----DRKLIVFGCLSKRYGKELEKEIPEIDAVFGVDEKDKIIDYIKQFS 114

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
                +  ++               Y  +     ++ I EGC + C+FC++P  RG   S
Sbjct: 115 KNSNFISQNFQ--------------YTVEPPSYRYIKIAEGCSRRCSFCIIPDVRGPFRS 160

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
            +  +++ E    + +G+ E  L+ Q++  + GK L G   T   LL  L  IKG   +R
Sbjct: 161 LNPEEILKEVENFVHSGIKEFILVAQDITQY-GKDLKG--YTLKRLLKDLCSIKGDFWIR 217

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
               +P D+ + LI+   D + ++ YL +P+Q   +RIL+ M RR T  EY + I +IR 
Sbjct: 218 LLYLYPSDIDENLIETIADEEKIVKYLDIPMQHSEERILRLMGRRGTKKEYLKKIKQIRQ 277

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             P++ + S FIVGFP ET+++F+  +D ++++ + +   FKYS   GT   ++  Q+ E
Sbjct: 278 AIPEVTLRSTFIVGFPTETEEEFQRLVDFIEEVQFDRLGVFKYSKEEGTKAYSLKGQIPE 337

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE--KGKLVGRSPWLQSVVL-- 440
           NVK  R   +  +     +  N A +G+  E LI+    +    +L   +P +  VV+  
Sbjct: 338 NVKNRRYNEIMARQAVISLEKNRALIGKKYEALIDYIDADIAIARLYCHAPEIDGVVILE 397

Query: 441 NSKNHNIGDIIKVRITD 457
           N+ +   G+ + + IT+
Sbjct: 398 NTADLKAGEKVTILITE 414


>gi|319790598|ref|YP_004152231.1| MiaB-like tRNA modifying enzyme YliG [Thermovibrio ammonificans
           HB-1]
 gi|317115100|gb|ADU97590.1| MiaB-like tRNA modifying enzyme YliG [Thermovibrio ammonificans
           HB-1]
          Length = 431

 Score =  171 bits (432), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 125/442 (28%), Positives = 217/442 (49%), Gaps = 36/442 (8%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQG-YERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  V S GC  N  D+  M  +  + G  E V+S++ AD+I++NTC     A E+    
Sbjct: 3   KKIAVISLGCPKNWVDTELMVGLLKATGEVELVSSLEAADVILVNTCGFITPAKEES--- 59

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +  I N   ++ K+  D  VVVAGC+ Q   EE+ R  P V+  +G     R        
Sbjct: 60  IDEILNAIEAK-KQSPDKKVVVAGCLYQRYKEELKRELPEVDAFIGVNELLR-------- 110

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT----AFLTIQEGCDKFCTFCVVPYTR 199
                      SVE    R + V   Y  +  +T    A+L I EGC   CT+C +P  R
Sbjct: 111 -----------SVERILNRKAAVRKPYLYREVLTPPHLAYLKIAEGCSNACTYCAIPIIR 159

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G   SR +++VV+EA++L + GV E+ ++ Q+  A+R     GE+     LL  L +++G
Sbjct: 160 GPLKSRPVNEVVEEAKRLAERGVKELYVIAQDTTAYRRDF--GEEKALIKLLEQLEKVEG 217

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           +  +R   ++P  ++D LI      + L+ Y+ +P+Q  +D++L SM R++T     +++
Sbjct: 218 IEWIRLMYTYPSHITDNLIDYMASSEKLVKYIDVPLQHINDKVLASMGRKYTRASAEKLL 277

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
           +++R   P IAI + FIVGFP E + +F      + +  +  A  FKYS   GT  +  L
Sbjct: 278 EKLRLRVPGIAIRTTFIVGFPTEGEAEFEELHTFIKEFKFDWAGFFKYSREEGT-AAYRL 336

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPW----- 434
             + E +K  RL  L++         + + VG+ ++++++    +    V    +     
Sbjct: 337 GDLPEELKDSRLNLLEETQFWIYEELHRSLVGKRLKLIVDSPSSDMPGFVEARSYRNAYE 396

Query: 435 LQSVVLNSKNHNIGDIIKVRIT 456
           +  +V    NH  G I++ ++T
Sbjct: 397 IDGIVYLKGNHTPGKIVEAKVT 418


>gi|262341116|ref|YP_003283971.1| MiaB family tRNA modification enzyme: 2-methylthioadenine
           synthetase [Blattabacterium sp. (Blattella germanica)
           str. Bge]
 gi|262272453|gb|ACY40361.1| MiaB family tRNA modification enzyme: 2-methylthioadenine
           synthetase [Blattabacterium sp. (Blattella germanica)
           str. Bge]
          Length = 446

 Score =  171 bits (432), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 121/422 (28%), Positives = 209/422 (49%), Gaps = 28/422 (6%)

Query: 33  GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92
           GC++N  ++  +   F +  Y+ V     AD+ V+N+C + + A  +        R++  
Sbjct: 12  GCKLNYAETSTIARKFSNLYYQHVPFKSYADIYVINSCSVTKNAEVE-------FRHIVR 64

Query: 93  SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNV--VVGPQTYYRLPELLERARFGK--- 147
           S + +     ++  GC AQ   +++   S IV V  V+G    +++ + L+     K   
Sbjct: 65  SAMNQNSQAFIIAIGCYAQLNSKKV---SSIVGVDLVLGSYEKFKITDYLDLELLKKSHP 121

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
           +++    +    F   S+ D    R R   +FL IQ+GCD  C++C++P +RG   S S+
Sbjct: 122 KIISNAKTKNTYFPSFSVGD----RTR---SFLKIQDGCDYKCSYCIIPISRGASRSESI 174

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK---CTFSDLLYSLSEIKGLVRLR 264
             ++   R L  NGV EI L G N+  + GK + GE     TF DL+ ++ +IK   R+R
Sbjct: 175 ENILKNIRLLFRNGVKEIVLTGVNIGDY-GKKIYGENRRLYTFFDLIQAIDQIKEKGRIR 233

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
            ++  P  + +  I+        +P+ H+P+QSGS+ IL  M+RR+    Y++ +++IR 
Sbjct: 234 LSSIEPNLLKNECIEFLSKSKHFVPHFHIPLQSGSNDILGKMHRRYKRELYQEKVNKIRC 293

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             PD  I SD IVGFPGET   F  T   + K+  +    F YSPR  T    +   V +
Sbjct: 294 FIPDAYIGSDIIVGFPGETHKHFLETYHFLKKLEISSLHIFTYSPRPNTKSITLQGYVSK 353

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSP-WLQS-VVLNS 442
            ++ +R   L+    ++   F +  V     VL EK+   +  L G +  ++++ + LNS
Sbjct: 354 KIQWKRNQILRNLSNKKYRFFCERQVYTKKTVLFEKNSTNQEYLYGYTENYIRTKIPLNS 413

Query: 443 KN 444
            N
Sbjct: 414 YN 415


>gi|325285391|ref|YP_004261181.1| 30S ribosomal protein S12 methylthiotransferase rimO [Cellulophaga
           lytica DSM 7489]
 gi|324320845|gb|ADY28310.1| Ribosomal protein S12 methylthiotransferase rimO [Cellulophaga
           lytica DSM 7489]
          Length = 433

 Score =  171 bits (432), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 136/454 (29%), Positives = 227/454 (50%), Gaps = 47/454 (10%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEK-VYSFLGRI 87
           V + GC  NVYDS  +     + G E V   +D +++V+NTC   + A E+ V + L  +
Sbjct: 13  VVTLGCSKNVYDSEVLMGQLKANGKE-VAHEEDGNIVVINTCGFIDNAKEESVNTILDFV 71

Query: 88  RNLKNSRIKEGGDL-LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           +       KE G++  V V GC+++    ++++  P V+   G     +LP LL      
Sbjct: 72  QK------KEAGEVDKVFVTGCLSERYKPDLIKEIPNVDEYFGTS---QLPSLL------ 116

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
            + ++ DY  E   ER++     Y       A+L I EGCD+ C+FC +P  RG   S  
Sbjct: 117 -KALEADYKHELIGERITTTPKNY-------AYLKIAEGCDRPCSFCAIPLMRGKHKSTP 168

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGL--VRL 263
           +  +V EA KL   GV E+ L+ Q++  +   GLD  +K   ++LL +L +++G+  +RL
Sbjct: 169 IEDLVTEAEKLAAKGVKELILIAQDLTYY---GLDLYKKRNLAELLEALVKVEGIEWIRL 225

Query: 264 RYT--TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
            Y   T  P D+ D + K       +  YL +P+Q  SD ILKSM R  T  +  +++  
Sbjct: 226 HYAFPTGFPMDVLDLMNKEPK----ICNYLDIPLQHISDSILKSMRRGTTQAKTTKLLQD 281

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
            R+  P++ I +  IVG+PGET++DF      V  + + +   F YS    T   N+ + 
Sbjct: 282 FRATVPNMTIRTTLIVGYPGETEEDFETLKQWVTDMRFERLGCFTYSHEENTHAYNLEDN 341

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQS 437
           V E VK +R   + +   +     N   +G+  + +I++  KE    VGR    SP + +
Sbjct: 342 VPEEVKQDRANQIMEIQSQISWELNQEKIGETFKCIIDR--KEGNYFVGRTEFDSPDVDN 399

Query: 438 -VVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468
            V++++  H +  G+   ++IT+     LYGE V
Sbjct: 400 EVLIDATKHYLKQGEYASIKITEAADFDLYGEPV 433


>gi|237800198|ref|ZP_04588659.1| ribosomal protein S12 methylthiotransferase [Pseudomonas syringae
           pv. oryzae str. 1_6]
 gi|331023055|gb|EGI03112.1| ribosomal protein S12 methylthiotransferase [Pseudomonas syringae
           pv. oryzae str. 1_6]
          Length = 447

 Score =  171 bits (432), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 146/474 (30%), Positives = 236/474 (49%), Gaps = 65/474 (13%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  FV S GC   + DS R+      +GYE V + +DAD++V+NTC   + A  +    
Sbjct: 10  PKVGFV-SLGCPKALVDSERILTQLRMEGYEVVATYEDADVVVVNTCGFIDTAKAESLEV 68

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G         IKE G   V+V GC+   +   I    P V  V GPQ Y          
Sbjct: 69  IGE-------AIKENGK--VIVTGCMG-VDASVIRSVHPSVLSVTGPQQY---------- 108

Query: 144 RFGKRVVDTDYSV----EDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
              ++VV+  + V    +D    + +V   G        A+L I EGC+  C+FC++P  
Sbjct: 109 ---EQVVNAVHDVVPPRQDHNPLIDLVPPQGVKLTPRHYAYLKISEGCNHSCSFCIIPSM 165

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA------WRGKGLDGE--KCTFSDL 250
           RG  +SR +  V+DEA++L+ +GV E+ ++ Q+ +A      +R    DG+  K   ++L
Sbjct: 166 RGKLVSRPVGDVLDEAKRLVKSGVKELLVISQDTSAYGVDVKYRTGFWDGQPIKTRMTEL 225

Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
             +L  +   VRL Y   +P       + A G    ++PYL +P Q  S +ILK M R  
Sbjct: 226 CQALGSMGVWVRLHYVYPYPHVDELIPLMAAGK---ILPYLDIPFQHASPKILKLMKR-- 280

Query: 311 TAYEYRQIIDRIRSVR---PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
            A+E + +  RI++ R   PD+ I S FIVGFPGET++DF+  +D + +    +   F+Y
Sbjct: 281 PAFEDKTLA-RIKNWREQCPDLIIRSTFIVGFPGETEEDFQYLLDWLTEAQLDRVGCFQY 339

Query: 368 SPRLGTPGSNMLEQ--VDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422
           SP  G P +N+L+   V +++K    +R +  Q+ +   ++      +G+ IEVLI++  
Sbjct: 340 SPVEGAP-ANLLDAAIVPDDIKQDRWDRFMAHQQAISAARLQMK---IGKEIEVLIDEV- 394

Query: 423 KEKGKLVGR----SPWLQSVVL----NSKNHNIGDIIKVRITDVKISTLYGELV 468
            ++G  VGR    +P +   V     +  N   GD I  R+TD     L+ E++
Sbjct: 395 DDRGA-VGRCFFDAPEIDGNVFIGLEDGSNVQPGDKIMCRVTDADEYDLWAEML 447


>gi|225853371|ref|YP_002733604.1| MiaB-like tRNA modifying enzyme [Brucella melitensis ATCC 23457]
 gi|256263147|ref|ZP_05465679.1| elongator protein 3 [Brucella melitensis bv. 2 str. 63/9]
 gi|225641736|gb|ACO01650.1| MiaB-like tRNA modifying enzyme [Brucella melitensis ATCC 23457]
 gi|263093050|gb|EEZ17200.1| elongator protein 3 [Brucella melitensis bv. 2 str. 63/9]
 gi|326409934|gb|ADZ66999.1| MiaB-like tRNA modifying enzyme [Brucella melitensis M28]
 gi|326539647|gb|ADZ87862.1| MiaB-like tRNA modifying enzyme [Brucella melitensis M5-90]
          Length = 427

 Score =  171 bits (432), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 127/432 (29%), Positives = 209/432 (48%), Gaps = 34/432 (7%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           ++GC++N Y+S  M     + G   + ++ D   I+ NTC +  +A  +    + + R  
Sbjct: 7   TFGCRLNTYESEVMRREADAAG---LGTLKDG-AIIFNTCAVTAEAVRQARQAIRKAR-- 60

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ------TYYRLPELLERAR 144
                +E  D  ++V GC AQ E +        V++V+G +      +Y  LP+     +
Sbjct: 61  -----RENPDARIIVTGCAAQTEADNFAAMGE-VDLVLGNEEKLKSNSYRMLPDFGVN-Q 113

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
           F K  V+    V +    +  VD    R R   AF+ +Q GCD  CTFC++PY RG   S
Sbjct: 114 FEKVRVNDIMEVRETASHM--VDAIEGRAR---AFVQVQNGCDHRCTFCIIPYGRGNSRS 168

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
             +  VVD+ ++L+ NG  E+ L G ++ ++ G  L         +   L+++  L RLR
Sbjct: 169 VPMGAVVDQVKRLVGNGYAEVVLTGVDMTSY-GPDLPSNLRLGKLVKTVLAQVPDLQRLR 227

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
            ++    +  + L++A      LMP+LHL +Q+G D ILK M RRH   +  +     R+
Sbjct: 228 LSSIDSIEADEDLMEAIASEKRLMPHLHLSLQAGDDMILKRMKRRHLRDDSIRFCQTARA 287

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           +RPDI   +D I GFP ET++ F+ ++ +V++ G      F YSPR GTP + M  QV  
Sbjct: 288 LRPDIVFGADIIAGFPTETEEMFQNSLKIVEECGLTHLHVFPYSPREGTPAARM-PQVRR 346

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
            +  ER   L+ +         +A  G    +L+EK G      V R+       ++   
Sbjct: 347 EIVKERAARLRAEGDRAYEKHLNALHGTRQRLLVEKEG------VARTEGFTLAAVDQG- 399

Query: 445 HNIGDIIKVRIT 456
            N G+II+  +T
Sbjct: 400 -NAGEIIERIVT 410


>gi|195382799|ref|XP_002050116.1| GJ21959 [Drosophila virilis]
 gi|194144913|gb|EDW61309.1| GJ21959 [Drosophila virilis]
          Length = 553

 Score =  171 bits (432), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 132/467 (28%), Positives = 227/467 (48%), Gaps = 42/467 (8%)

Query: 16  QIVDQCIVP--QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIR 73
           + + + +VP  Q+ +VK++GC  N  DS  M     + GY  ++  D+ADL +LN+C ++
Sbjct: 63  KTIYESVVPGTQKVYVKTWGCAHNNSDSEYMAGQLAAYGYN-LSGKDEADLWLLNSCTVK 121

Query: 74  EKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQ-AEGEEILRRSPIVNVVVGPQT 132
             + +         RN   S ++ G    VVVAGCV Q A   + LR       V+G Q 
Sbjct: 122 NPSEDT-------FRNEIESGMRNGKH--VVVAGCVPQGAPKSDYLRGL----SVIGVQQ 168

Query: 133 YYRLPELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCT 191
             R+ E++E    G  V +  +  V  +    + +     RK  +   ++I  GC   CT
Sbjct: 169 IDRVVEVVEETLKGHSVRLLQNKKVHGRRVAGAALSLPKVRKNPLIEIISINSGCLNQCT 228

Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLL 251
           +C   + RG   S    ++V+ AR+  D G CEI L  ++  A+ G+ +     +  +LL
Sbjct: 229 YCKTKHARGDLASYPPDEIVERARQSFDEGCCEIWLTSEDTGAY-GRDIGS---SLPELL 284

Query: 252 YSLSEI--------KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
           + L E+         G+    Y   H  +++  L         +  +LH+PVQSGSD +L
Sbjct: 285 WQLVEVIPEHCMLRVGMTNPPYILEHLEEVAKVLQHPR-----VYAFLHVPVQSGSDSVL 339

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
             M R +   ++  ++D +RS  P + I++D I GFP ET+ DF  TM L +K  +   F
Sbjct: 340 GEMKREYCRKDFEHVVDFLRSRVPGLTIATDIICGFPTETEQDFEETMTLCEKYRFPSLF 399

Query: 364 SFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDAC--VGQIIEVLIEKH 421
             ++ PR GTP + M E++  N+  +R     K+L +   S+       GQ+  VL+ + 
Sbjct: 400 INQFFPRPGTPAAKM-ERIPANLVKKR----TKRLTDLFYSYEPYAGREGQLYTVLVTEI 454

Query: 422 GKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
             +K   VG +   + V+L  +++ +G  ++VRIT     ++  E++
Sbjct: 455 SHDKLHYVGHNKSYEQVLLPMRDNLLGTRVRVRITGTSKFSMMAEIL 501


>gi|328953723|ref|YP_004371057.1| MiaB-like tRNA modifying enzyme [Desulfobacca acetoxidans DSM
           11109]
 gi|328454047|gb|AEB09876.1| MiaB-like tRNA modifying enzyme [Desulfobacca acetoxidans DSM
           11109]
          Length = 440

 Score =  171 bits (432), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 124/449 (27%), Positives = 217/449 (48%), Gaps = 40/449 (8%)

Query: 31  SYGCQMNVYDSLRM----EDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           ++GC++N Y+S  M    E + F+     ++S + AD++V+NTC +  +   +V   L +
Sbjct: 15  TFGCKVNQYESAFMAEQAEKLTFT-----LSSPEAADILVVNTCTVTARTDRQVRQCLRQ 69

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE--RAR 144
              L++          ++V GC AQ   +E L   P V  V G     R  ELL      
Sbjct: 70  WGRLQSPPT-------ILVTGCYAQRAPQE-LANFPGVKAVFGNVEKGRWLELLAAMSQT 121

Query: 145 FGKRVVDTDYSVEDKFERLSIVD-GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            G  V  +D    ++F  + +    G+ R     AF+ IQ+GC  +C++C+VP  RG E 
Sbjct: 122 AGTMVRVSDIQNCNRFVPMPLGSFWGHTR-----AFMKIQDGCGHYCSYCIVPLVRGPER 176

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           S   S ++ + + L D G  EI   G N++ + G+ L G+K    DL+  L +    +R 
Sbjct: 177 SLPSSDLLRQLQHLSDAGFQEIVFTGVNLSRY-GRDLPGDKGLI-DLVRLLRQTSWPLRF 234

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+++  P+D+S  L++   D     P+ H+P+QSG+  +L +M+R +    +  +I  + 
Sbjct: 235 RFSSLEPQDISYGLLRELSDWPHFCPHFHIPLQSGASAVLAAMHRNYQPAWFEALIRELT 294

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           ++ P  A+  D +VGFP ET   F  T +L++++  A    F YS R GT  + +  Q  
Sbjct: 295 ALFPQAAVGLDVMVGFPTETAAAFEQTKELLNRLPVAYLHVFPYSARPGTEAAVLSPQTS 354

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQS------ 437
                +R   L+     +++ F    +GQ++EVL+E      G +  R  WL+       
Sbjct: 355 AREVGQRARSLRDLSHGKKLEFYQRHLGQVVEVLVE------GPVAHRPGWLKGLTANYL 408

Query: 438 -VVLNSKNHNIGDIIKVRITDVKISTLYG 465
            V+L      +   I++R+ ++    L G
Sbjct: 409 RVMLPGPPEWVNRFIRLRLIEMNGQDLIG 437


>gi|282877988|ref|ZP_06286797.1| MiaB-like protein [Prevotella buccalis ATCC 35310]
 gi|281299989|gb|EFA92349.1| MiaB-like protein [Prevotella buccalis ATCC 35310]
          Length = 453

 Score =  171 bits (432), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 116/404 (28%), Positives = 197/404 (48%), Gaps = 31/404 (7%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N  ++    +M    G   V+  + AD+ ++NTC + E A  K    + R+   
Sbjct: 16  TLGCKLNFSETSTFGEMLQELGVRTVDRGERADICLINTCSVTEVADHKCRQAIRRM--- 72

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF----- 145
               ++E     ++V GC AQ E E +  + P V++V+G      L + L  A       
Sbjct: 73  ----VRENPGAFIIVTGCYAQLESEAV-SKIPGVDLVLGSNEKAHLVQYLNDAWLHRNAL 127

Query: 146 ---GKRVVDTDYSVED-KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
              G  V D  ++ +  K + +       ++      FL +Q+GC+ FCT+C +P+ RG 
Sbjct: 128 REQGDEVTDGLHAFQSVKTKDIKTFQPSCSKGNRTRYFLKVQDGCNYFCTYCTIPFARGF 187

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC--TFSDLLYSLSEIKG 259
             + S++ +V +A +  + G  EI L G N+  +      GE+   TF DL+ +L +++G
Sbjct: 188 SRNPSIASLVQQAEQAAEEGGKEIVLTGVNIGEF------GERTDETFLDLVKALDQVEG 241

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           + R R ++  P  M+D LI         MP+ H+P+QSGSD +LK M+R +    +   I
Sbjct: 242 IRRFRISSLEPDLMADELIDYCAQSRAFMPHFHIPLQSGSDEVLKLMHRHYDTSLFADKI 301

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM- 378
             I+ V P   I  D +VG  GE  + F  + + +  +   Q   F YS R GT   ++ 
Sbjct: 302 HHIKEVMPHAFIGVDVMVGCRGEKPEYFEESYEFIRSLDVTQLHVFPYSERPGTRALSIP 361

Query: 379 --LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
             + + D+ ++++RLL L     E+  +F    VGQ  EVL EK
Sbjct: 362 YVVSEHDKKLRSKRLLQLSD---EKTHAFYAKYVGQEAEVLFEK 402


>gi|149174611|ref|ZP_01853237.1| hypothetical protein PM8797T_10069 [Planctomyces maris DSM 8797]
 gi|148846721|gb|EDL61058.1| hypothetical protein PM8797T_10069 [Planctomyces maris DSM 8797]
          Length = 436

 Score =  171 bits (432), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 125/432 (28%), Positives = 200/432 (46%), Gaps = 38/432 (8%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR--IR 88
           + GC++N Y++  +++     GY      + ADL V+NTC +      K     GR  IR
Sbjct: 19  TLGCKVNQYETQLVKEALEKNGYREAGEAETADLCVVNTCTVTATGDSK-----GRKLIR 73

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
           NL     K      ++V GC A  + + +     +  VV   +    LP++LER      
Sbjct: 74  NL----AKNNPGTKILVMGCYATRDPKTVSELPGVFEVVTDKR---ELPDILER----HG 122

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           +VD    + + FE          RKR   A++ +Q+GC   CT+C++P  R    SRS  
Sbjct: 123 IVDMPTGISE-FE---------GRKR---AYVKVQDGCILRCTYCIIPSVRPGLQSRSPE 169

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAW-----RGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
            +  E R+L+DNG  EI L G +V  +     RGK           L   L +I G  R+
Sbjct: 170 DIEAEVRRLVDNGFKEIVLTGIHVGHFGVDTTRGKS-GKPPFRLWHLFRKLDQIPGDWRM 228

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R ++    +++D  I A  D + L P  H  +QSGSD +L+ M RR+    + + + ++R
Sbjct: 229 RLSSVETAEINDDFISAAADCEHLCPQFHPSLQSGSDTVLRRMKRRYHVSRFLEKLQKMR 288

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
                 + ++D IVGFPGETD +F  TM   ++  + +   F +S R GTP +   +QV 
Sbjct: 289 ERLNHPSFTTDVIVGFPGETDAEFAETMQACEEAAFMKIHIFPFSARKGTPAATYEDQVS 348

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNS 442
             ++ ER   L    R     F    + + +EV+IE+    + G + G   W   VV   
Sbjct: 349 PEIRQERCAQLADLERSLAQKFYHTLIDRDLEVMIERECDGRPGWVRGTDRWYAPVVCQG 408

Query: 443 KNHNIGDIIKVR 454
              ++G  +  R
Sbjct: 409 TKADLGKFVYAR 420


>gi|126734340|ref|ZP_01750087.1| MiaB-like tRNA modifying enzyme [Roseobacter sp. CCS2]
 gi|126717206|gb|EBA14070.1| MiaB-like tRNA modifying enzyme [Roseobacter sp. CCS2]
          Length = 423

 Score =  171 bits (432), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 112/355 (31%), Positives = 179/355 (50%), Gaps = 31/355 (8%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           ++GC++N Y++  M+++  + G +        + IV+NTC +  +A  K    + ++R  
Sbjct: 14  NHGCRLNAYETEAMKELATAAGVD--------NAIVVNTCAVTSQAVRKARQDIRKLR-- 63

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG------PQTYYRL-PELLERA 143
                ++  D  ++V GC AQ E +        V+VV+G      P T+  + P+L+ + 
Sbjct: 64  -----RDYPDAKLIVTGCAAQTEPDTFANMGE-VDVVIGNTEKMDPATWAGMAPDLIGQT 117

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
              +  VD   SV +    L  +DG   R R   A++ +Q GCD  CTFC++PY RG   
Sbjct: 118 ESVQ--VDDIMSVTETAGHL--IDGFGTRSR---AYVQVQNGCDHRCTFCIIPYGRGNSR 170

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           S     VVD+ ++L+D G  E+ L G ++ +W G  L         ++  L  +  L RL
Sbjct: 171 SVPAGVVVDQIKRLVDTGYNEVVLTGVDLTSW-GADLPATPKLGDLVMRILKLVPDLPRL 229

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R ++    ++ + L++A      LMP+LHL +Q G D ILK M RRH   +        R
Sbjct: 230 RISSIDSIEVDENLMQAIATEPRLMPHLHLSLQHGDDMILKRMKRRHLRDDAIAFCQEAR 289

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           ++RPD+   +D I GFP ETDD F  ++ LV +        F YSPR GTP + M
Sbjct: 290 TLRPDMTYGADIIAGFPTETDDMFANSLALVKECDLTWLHVFPYSPRPGTPAAKM 344


>gi|167750131|ref|ZP_02422258.1| hypothetical protein EUBSIR_01100 [Eubacterium siraeum DSM 15702]
 gi|167656874|gb|EDS01004.1| hypothetical protein EUBSIR_01100 [Eubacterium siraeum DSM 15702]
          Length = 446

 Score =  171 bits (432), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 122/450 (27%), Positives = 213/450 (47%), Gaps = 26/450 (5%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N  D+  M       G++ VN    AD++++NTC   + A E+    +    + 
Sbjct: 11  SLGCPKNQCDAELMLAKIAKAGFKIVNEAGLADVVIINTCGFIQSAKEEAIEEIMEAISR 70

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
           KN  I +     ++V GC+A+   +++    P ++ VVG      + E++      +RV+
Sbjct: 71  KNDGINKK----IIVTGCLAERYQKQMDEEFPEIDAVVGIAKNDDIVEIINSVMLDRRVI 126

Query: 151 DTDYSVEDKFE--RLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
                +    E  +L      Y       A+L I +GC   C++C +P  RG   SR + 
Sbjct: 127 TFGDKLCHNMEGDKLQSTLPHY-------AYLRIADGCSNKCSYCAIPLIRGKMRSRKME 179

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYTT 267
            +++EA+K  +NGV E+ ++ Q+V A+   G+D  +K    DLL  L +I G+  +R   
Sbjct: 180 NIIEEAKKFAENGVKELVIVAQDVTAY---GIDLYKKYALPDLLKQLCKIDGIKWIRLLY 236

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
            +P  M+D LI+     D ++ Y+ +P+Q  +  IL++M R       R++  ++R   P
Sbjct: 237 CYPERMTDELIETIKTEDKVLNYIDIPIQHCNKEILRNMYRGGDEQSLRELFAKLRREIP 296

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
            + + +  I GFPGET++ F    + V+ I + +   F YS    TP + M +QVDE  +
Sbjct: 297 GVVLRTTLITGFPGETEEQFSELAEFVNDIKFERLGCFAYSAEEDTPAAEMPDQVDEGER 356

Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVLNSK 443
             R   +  +   +   +    +G   EV+ E   +      GRS    P +  ++  + 
Sbjct: 357 QRRADIITGEQEIRMGEYYAGMIGNTYEVVCEGFDRYSDMYFGRSMHFAPEIDGMIYFTS 416

Query: 444 NHN-----IGDIIKVRITDVKISTLYGELV 468
             +     IGD + V+ITDV  + L GE V
Sbjct: 417 AKDKGPLTIGDFVNVKITDVLENNLLGERV 446


>gi|195456808|ref|XP_002075296.1| GK17257 [Drosophila willistoni]
 gi|194171381|gb|EDW86282.1| GK17257 [Drosophila willistoni]
          Length = 570

 Score =  171 bits (432), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 129/472 (27%), Positives = 227/472 (48%), Gaps = 41/472 (8%)

Query: 11  AHMVSQIVDQCIVP--QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLN 68
           A  +   + + ++P  Q+ ++K++GC  N  DS  M     S GY+  +  D+ADL +LN
Sbjct: 59  AKTLRAPIHESVIPGTQKVYIKTWGCAHNNSDSEYMAGQLASYGYQLCSGKDEADLWLLN 118

Query: 69  TCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQA-EGEEILRRSPIVNVV 127
           +C ++  + +         RN   S ++ G    VVVAGCV Q     E LR       V
Sbjct: 119 SCTVKNPSEDT-------FRNEIESGMQNGKH--VVVAGCVPQGGPKSEYLRGL----SV 165

Query: 128 VGPQTYYRLPELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGC 186
           +G Q   R+ E++E    G  V +  +  V  +    + +     RK  +   ++I  GC
Sbjct: 166 IGVQQIDRVVEVVEETLKGHSVRLLQNKKVNGRRVAGASLALPKVRKNPLVEIISINTGC 225

Query: 187 DKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT 246
              CT+C   + RG   S    ++V+ AR+    G CEI L  ++  A+ G+ +     +
Sbjct: 226 LNQCTYCKTKHARGDLASYPPEEIVERARQSFAEGCCEIWLTSEDTGAY-GRDIGS---S 281

Query: 247 FSDLLYSLSEI--------KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
             +LL+ L E+         G+    Y   H  +++  L         +  +LH+PVQSG
Sbjct: 282 LPELLWQLVEVIPEHCMLRVGMTNPPYILEHLEEVAKVLQHPR-----VYSFLHVPVQSG 336

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           SD +L  M R +   ++  ++D +R+  P + I++D I GFP ET+ DF  TM L +K  
Sbjct: 337 SDSVLGEMKREYCRKDFEHVVDFLRARVPGLTIATDIICGFPTETEADFEETMTLCEKYR 396

Query: 359 YAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDAC--VGQIIEV 416
           +   F  ++ PR GTP + M E++  N+  +R     K+L +   ++      VG++  V
Sbjct: 397 FPSLFINQFFPRPGTPAAKM-ERIPANLVKKR----TKRLTDLFYTYEPYAGRVGEVYAV 451

Query: 417 LIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           L+ +   +K   VG +   + ++L  + + +G  + VRIT V   ++ G+++
Sbjct: 452 LVTEISHDKLHYVGHNKSYEQILLPMRKNLLGTRVHVRITSVSKFSMMGDIL 503


>gi|19704549|ref|NP_604111.1| Fe-S oxidoreductase [Fusobacterium nucleatum subsp. nucleatum ATCC
           25586]
 gi|19714835|gb|AAL95410.1| Fe-S oxidoreductase [Fusobacterium nucleatum subsp. nucleatum ATCC
           25586]
          Length = 435

 Score =  171 bits (432), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 129/449 (28%), Positives = 228/449 (50%), Gaps = 40/449 (8%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  +++    +GYE V   D +D+ ++N+C +   A  K  + L R + +
Sbjct: 11  TLGCKVNQYETESIKNQLIKRGYEEVPFEDKSDIYIINSCTVTSIADRKTRNMLRRAKKI 70

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILR------------RSPIVNVVVGPQTYYRLPE 138
            N + K      V+V GC AQ    EIL             +S IVN V   +       
Sbjct: 71  -NPKAK------VIVTGCYAQTNSREILEIEDVDFVIDNKNKSNIVNFVGAIEDIS---- 119

Query: 139 LLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
             ER + G    + +Y  E +F  L         +    A++ IQ+GC+ FC++C +P+ 
Sbjct: 120 -FEREKNGNIFQEKEYQ-EYEFATL---------REMTRAYVKIQDGCNHFCSYCKIPFA 168

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258
           RG   SR    ++ E  KL+++G  EI L+G +++A+ G+  + EK  F  LL  +  IK
Sbjct: 169 RGKSRSRKKENILKEIEKLVEDGFKEIILIGIDLSAY-GEDFE-EKDNFESLLEDILRIK 226

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
            L R+R  + +P  ++D  I+   +   LMP+LH+ +QS  D +LK+M R + +   ++ 
Sbjct: 227 DLKRVRIGSVYPDKITDRFIELFKN-KKLMPHLHISLQSCDDTVLKNMRRNYGSSLIKKS 285

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           + +++S   D+  ++D IVGFP E +  F+ T D++ +I ++    F+YS R GT  SNM
Sbjct: 286 LLKLKSKVKDMEFTADVIVGFPKEDEIMFQNTYDVIKEIEFSGLHIFQYSDREGTIASNM 345

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSP-WLQS 437
             ++D   K +R   L    +E  V      + + +EVL+E+   + G+  G S  +L+ 
Sbjct: 346 DGKIDVKTKKQRADRLDSLKQEMIVDSRKKYLEKSLEVLVEEE--KNGEYFGYSQNYLRV 403

Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGE 466
              + K   + ++I V++  V+   L  E
Sbjct: 404 KFRSDKKDLVNNLINVKVKCVENDILIAE 432


>gi|183220785|ref|YP_001838781.1| putative MiaB-like tRNA modifying enzyme [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Paris)']
 gi|189910885|ref|YP_001962440.1| 2-methylthioadenine synthetase [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|238066359|sp|B0SGD8|RIMO_LEPBA RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|238066364|sp|B0SPT9|RIMO_LEPBP RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|167775561|gb|ABZ93862.1| 2-methylthioadenine synthetase [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167779207|gb|ABZ97505.1| Putative MiaB-like tRNA modifying enzyme [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Paris)']
          Length = 448

 Score =  170 bits (431), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 122/438 (27%), Positives = 216/438 (49%), Gaps = 19/438 (4%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC-HIREKAAEKVY 81
            P+ FF+ + GC  N  DS+ M      +G       + +D  ++NTC  I++   E + 
Sbjct: 11  TPKSFFITTLGCPKNTVDSMAMHQSLLKEGLLPAAGPEASDFHLVNTCTFIQDATKETIQ 70

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           + L  I   K ++ K      +VV GC A+  G+EI    P V++  G   Y +  E+L 
Sbjct: 71  TILDSIDIKKQNKQK------LVVVGCFAERAGKEISDDLPEVDLHFGTGKYDKAGEIL- 123

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           R  F     D     ED  ERL+   G  N  +   +++ I +GC++ C FC++P  RG 
Sbjct: 124 RKNFPLEFKDLTEFNEDLLERLTTSKGIENYSKPY-SYVKISDGCNRGCHFCIIPNLRGK 182

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
                 + V+++ +  +  G  EI L+ Q+   + GK  D       DL+ S++ ++GL 
Sbjct: 183 YRDTDSNDVLEQTKLAVKAGSKEICLVSQDT-VFYGKDTD----KLMDLVRSVAAVEGLE 237

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
            LR    +P   ++ L+  + ++  + PYL  P+Q  S  +LKSMNR      ++ +  +
Sbjct: 238 ILRLLYLYPDKKTEKLLDLYREIPKIAPYLESPLQHVSKSVLKSMNRTGDYEFFKSLFQK 297

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
            R +RPD+ I + FI+GFPGET +D    +  V+ +   +   F YSP+ GT G+ M  Q
Sbjct: 298 ARDIRPDLEIRTSFILGFPGETMEDVEEIIRFVEDVKPEKVNLFPYSPQEGTKGATMDGQ 357

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR---SPWLQSV 438
           + +   A R+  +++       + +   +G+I   ++++   + G +V R   +P +  V
Sbjct: 358 LKDKEIARRVNLVREAYLGTLKTIHQNRIGKIYPCVVDEV-LDDGAIVRRLQDAPEIDEV 416

Query: 439 V-LNSKNHNIGDIIKVRI 455
           V + +K+  +G   KVR+
Sbjct: 417 VYVETKDLKLGQFGKVRV 434


>gi|118496968|ref|YP_898018.1| tRNA-methylthiotransferase MiaB protein [Francisella tularensis
           subsp. novicida U112]
 gi|194324197|ref|ZP_03057971.1| conserved hypothetical protein [Francisella tularensis subsp.
           novicida FTE]
 gi|238066223|sp|A0Q4U9|RIMO_FRATN RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|118422874|gb|ABK89264.1| tRNA-methylthiotransferase MiaB protein [Francisella novicida U112]
 gi|194321644|gb|EDX19128.1| conserved hypothetical protein [Francisella tularensis subsp.
           novicida FTE]
          Length = 439

 Score =  170 bits (431), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 130/457 (28%), Positives = 215/457 (47%), Gaps = 52/457 (11%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           +P+  FV S GC  N+ DS R+     ++GY+ V+S D+AD++++NTC     A ++   
Sbjct: 4   IPKIGFV-SLGCPKNLVDSERIITKLKAEGYDLVDSYDNADMVIVNTCGFLNSAIDESLE 62

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +G         I E G +LV   GC+   + + I  + P V  + GPQ Y  L   +E 
Sbjct: 63  VIGE-------AIAENGKVLV--TGCLGN-KADLIKEKHPEVLSITGPQDYENL---IEA 109

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
                 +   D+      + + +    Y       ++L I EGC+  CTFC++P  RG  
Sbjct: 110 VHTHAPIFANDFVSLVPPQGIKLTPRHY-------SYLKISEGCNNTCTFCIIPDIRGKL 162

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLL 251
            SRS+  ++ EA KL + GV E+ ++ Q+ +A           W  K     +    DL 
Sbjct: 163 KSRSIDNIMKEAEKLKNAGVKELLVISQDTSAYGVDIKYKSGIWNNKEY---QSNIIDLA 219

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
            +L ++    RL Y   +P       + A G +   +PYL +P+Q  S  +LK M R   
Sbjct: 220 TALGDLDMWTRLHYVYPYPHVDKIVPLMAQGKI---LPYLDVPLQHSSPEVLKRMKRPAH 276

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
             +    I++ R + PDI I S FIVGFPGET+ DF   +D  +K    +   FKYS   
Sbjct: 277 TQKTLDRINKWRDICPDITIRSTFIVGFPGETEADFEHLLDFAEKAQLDRVGCFKYSEVE 336

Query: 372 GTPGSNMLEQVDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL 428
           G   +     + E VK +RL   + LQ ++   ++      VG   +V+I+   K++   
Sbjct: 337 GAKANQFDNLISEEVKQQRLDEFMGLQAQISTDKLQ---RFVGTEQQVIIDAINKDENYA 393

Query: 429 VGRSPW------LQSVVLNS--KNHNIGDIIKVRITD 457
           +GR+ +       Q ++ ++  +N  +G+   V IT+
Sbjct: 394 IGRTKYDAPEVDGQVIIGDALERNLKVGEFATVEITE 430


>gi|107029038|ref|YP_626133.1| hypothetical protein Bcen_6297 [Burkholderia cenocepacia AU 1054]
 gi|116689803|ref|YP_835426.1| MiaB-like tRNA modifying enzyme YliG [Burkholderia cenocepacia
           HI2424]
 gi|123070902|sp|Q1BGU5|RIMO_BURCA RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|238065303|sp|A0K7Q6|RIMO_BURCH RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|105898202|gb|ABF81160.1| SSU ribosomal protein S12P methylthiotransferase [Burkholderia
           cenocepacia AU 1054]
 gi|116647892|gb|ABK08533.1| SSU ribosomal protein S12P methylthiotransferase [Burkholderia
           cenocepacia HI2424]
          Length = 453

 Score =  170 bits (431), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 134/477 (28%), Positives = 219/477 (45%), Gaps = 61/477 (12%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  FV S GC   + DS ++     ++GYE   S D ADL+V+NTC   ++A ++    
Sbjct: 5   PKVGFV-SLGCPKALVDSEQIITQLRAEGYEISGSYDGADLVVVNTCGFIDEAVQESLDA 63

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCV---AQAEGEEILRR-SPIVNVVVGPQTYYRLPEL 139
           +G         + E G   V+V GC+   + A G  ++    P V  V GP     + + 
Sbjct: 64  IGEA-------LTENGK--VIVTGCLGAKSSASGSNLIEEVHPKVLAVTGPHAVGEVMQA 114

Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           +  +   K          D F  L +   G        A+L I EGC+  CTFC++P  R
Sbjct: 115 V-HSHLPKP--------HDPFVDL-VPAAGIKLTPRHYAYLKISEGCNHRCTFCIIPSMR 164

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFS 248
           G  +SR +++V+ EA  L  +GV E+ ++ Q+ +A           W GK +   K   +
Sbjct: 165 GDLVSRPVAEVMLEAENLFKSGVKELLVISQDTSAYGVDVKYRTGFWNGKPI---KTRMT 221

Query: 249 DLLYSLSEIKG----LVRLRYTTSHPRD------MSDCLIKAHGDLDVLMPYLHLPVQSG 298
           DL+ +L E+       VRL Y   +P        M++   K H     ++PYL +P Q  
Sbjct: 222 DLVAALGELAAQYGAWVRLHYVYPYPSVDEVIPLMAEGAFKGH-----VLPYLDVPFQHA 276

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
              +LK M R   A +  + + + R + PD+ I S FI GFPGET++ F   +D + +  
Sbjct: 277 HPEVLKRMKRPANAEKVLERVQKWREICPDLTIRSTFIAGFPGETEEQFETLLDFIREAE 336

Query: 359 YAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI 418
             +   F YSP  G   +++   + + V+ ER     +   E   +     VG+ ++VLI
Sbjct: 337 LDRVGCFAYSPVEGATANDLDGALPDEVREERRARFMEVAEEVSANRMQRKVGKTLKVLI 396

Query: 419 EKHGKEK--GKLVGRSPWLQSVVL------NSKNHNIGDIIKVRITDVKISTLYGEL 467
           ++   E   G+    +P +  VV        SK + +GD + V+IT      L+GE+
Sbjct: 397 DEVSAEGGIGRTAADAPEIDGVVYVEPAAKASKRYKVGDFVSVKITGADGHDLWGEV 453


>gi|255514141|gb|EET90403.1| RNA modification enzyme, MiaB family [Candidatus Micrarchaeum
           acidiphilum ARMAN-2]
          Length = 423

 Score =  170 bits (431), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 120/441 (27%), Positives = 213/441 (48%), Gaps = 29/441 (6%)

Query: 28  FVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRI 87
           ++K+YGC +N  DS  +  +  S    +  SM DAD+I++NTC ++    +K+   L ++
Sbjct: 4   YIKTYGCTLNQADSDIINSVLDSANIGQAESMQDADVIIVNTCTVKNPTEQKISDLLKKL 63

Query: 88  RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147
            + K           V+V GC+A A  + I   SP  ++V        +P+ + R   G+
Sbjct: 64  ESEKRK---------VLVTGCMAAANPDIISNASPSASIVT-ISNLEDMPDAVSRTASGE 113

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
           RVV +     D+          +  ++G  A + + +GC   C+FC   + R    S S 
Sbjct: 114 RVVMSSLQKRDRL-------ASFKPRQGPVARIPVSDGCMSSCSFCETKFARSALNSFSE 166

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
             +++  +  + +G  EI +  Q++ A+   G D  K   + L+  +S I+G  ++R   
Sbjct: 167 DLILNAVKYSVKSGAVEIDITSQDIGAY---GAD-RKSNIALLMEKISRIEGFFKVRIGM 222

Query: 268 SHPRDMSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
            +P  ++  + +    L  +    + HLP+QSGSD +LKSM R +T  +Y + +D +RS 
Sbjct: 223 LNPERLAGYINEFASALGNEKFYKFAHLPLQSGSDSVLKSMRRNYTVDQYLEFVDVLRSY 282

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P I+I +D IVG+P ETD+DF  +++++           ++  R  T    M +Q+D+ 
Sbjct: 283 VPGISIETDMIVGYPTETDEDFTNSIEVLKSFRPDVTNISRFGARRHTAAHKM-KQLDQT 341

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQ-IIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
           +  ER   +   +R  Q   N   VGQ I  ++ E  G     + GR+   + VVL   +
Sbjct: 342 LIKERSSEMYSAVRGIQHGINGKFVGQRITALMTESTGVS---INGRTDSYKQVVLRGAS 398

Query: 445 HN-IGDIIKVRITDVKISTLY 464
            + IG +I V +     + LY
Sbjct: 399 SDLIGKLINVSVHSATANALY 419


>gi|187736112|ref|YP_001878224.1| MiaB-like tRNA modifying enzyme YliG [Akkermansia muciniphila ATCC
           BAA-835]
 gi|238065282|sp|B2ULZ9|RIMO_AKKM8 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|187426164|gb|ACD05443.1| MiaB-like tRNA modifying enzyme YliG [Akkermansia muciniphila ATCC
           BAA-835]
          Length = 452

 Score =  170 bits (431), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 134/456 (29%), Positives = 209/456 (45%), Gaps = 32/456 (7%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA-EKVYSFLGRIRN 89
           S GC  N+ DS  M       G       + AD++V+NTC   ++A  E + + L  +R 
Sbjct: 9   SLGCPKNLVDSEIMIGHLQKAGMTMTPEPELADVMVVNTCAFIDQAKQEAIDAILDIVRA 68

Query: 90  LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149
            +N    E   L  +VAGC++Q   +E+    P V+  +GP    +LPE++ +    + +
Sbjct: 69  RENGAYPENQKL--IVAGCLSQRFRKELPALLPEVDAFIGPDQITKLPEIITQV-MDRTI 125

Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGV---TAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
            D ++ +E K     + D    R R     TA++ I EGC+  C +C++P  RG   SRS
Sbjct: 126 QDRNF-IEGKCR--YVPDWNTPRYRLTPPHTAYIKIAEGCNHGCAYCIIPMIRGRHRSRS 182

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNV-----NAW------RGKGLDGEKC-TFSDLLYSL 254
              VV EA  LI +GV EI L+ Q++     + W      R   +D  +  + + LL +L
Sbjct: 183 QQDVVREAETLIRSGVKEICLIAQDITYYGMDKWTDARPNRRSAVDSSRGESLASLLRAL 242

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
           + I+G   +R   +HP   SD L  A  +   +  Y+ +P+Q  SD +L +M R      
Sbjct: 243 NAIEGEFWIRLLYTHPAHWSDELTAAIAECPKVARYVDIPLQHISDNMLDAMQRVTDGNY 302

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
            R ++  IR   P IAI + FI GFPGET+DD +  M+ +++  + +A  F +S   GT 
Sbjct: 303 IRTLLRNIRKAVPGIAIRTTFITGFPGETEDDHQELMEFIEEFRFERAGIFTFSREEGTK 362

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPW 434
              M  QV    KA R       L           +G+ I VL++  G      V R+ W
Sbjct: 363 AYKMPNQVHHRTKARRYNEATLLLARLASETGQEQIGRQIRVLVDAPG------VARTEW 416

Query: 435 ----LQSVVLNSKNHNIGDIIKVRITDVKISTLYGE 466
               +   V       +G    V +TD     L  E
Sbjct: 417 DAPDIDGTVSVPLTLPVGQFATVTVTDAVAYELTAE 452


>gi|13473651|ref|NP_105219.1| hypothetical protein mlr4319 [Mesorhizobium loti MAFF303099]
 gi|14024401|dbj|BAB51005.1| mlr4319 [Mesorhizobium loti MAFF303099]
          Length = 446

 Score =  170 bits (431), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 132/446 (29%), Positives = 211/446 (47%), Gaps = 46/446 (10%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
            P R  V ++GC++N Y+S  M     S G   +        ++ NTC +  +A  +   
Sbjct: 18  APNRIDVVTFGCRLNTYESEVMRREAESAGLGALQ----GGAVIFNTCAVTGEAVRQARQ 73

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ------TYYRL 136
            + + R       ++     ++V GC AQ E E+       V++V+G +      +Y  L
Sbjct: 74  AIRKAR-------RDNPGARIIVTGCAAQTEPEKFAAMDE-VDLVLGNEEKLKANSYRAL 125

Query: 137 PEL----LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTF 192
           P+      E+AR     V+  +SV +    +  VD    R R   AF+ +Q GCD  CTF
Sbjct: 126 PDFGVNDTEKAR-----VNDIFSVRETAGHM--VDAIEGRAR---AFVQVQNGCDHRCTF 175

Query: 193 CVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLY 252
           C++PY RG   S  +  VV++ ++L  NG  EI L G ++ ++ G  L G       +  
Sbjct: 176 CIIPYGRGNSRSVPMGAVVEQVKRLAGNGYAEIVLTGVDMTSF-GADLPGAPKLGRLVKT 234

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
            L ++  + RLR ++    +  D L+ A      LMP+LHL +QSG D ILK M RRH  
Sbjct: 235 ILKQVPDVKRLRLSSIDSIEADDDLLDAIATEPRLMPHLHLSLQSGDDMILKRMKRRHLR 294

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
            +  +  + +R +RP+I   +D I GFP ETD  F  ++ +V++ G      F +SPR G
Sbjct: 295 DQSIRFCEDVRKLRPEIVFGADIIAGFPTETDAMFENSIKIVEECGLTHLHVFPFSPREG 354

Query: 373 TPGSNMLEQVDENVK--AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG 430
           TP + M +   E VK  A RL    +    + +S   +  G    +LIE+ G      +G
Sbjct: 355 TPAARMPQVRREVVKQRAARLRAAGEAAYRRHLS---SLPGTRQSILIERDG------LG 405

Query: 431 RSPWLQSVVLNSKNHNIGDIIKVRIT 456
           R+       L +     G+I++  IT
Sbjct: 406 RTEGFTLAALGTGAP--GEIVEATIT 429


>gi|296132944|ref|YP_003640191.1| MiaB-like tRNA modifying enzyme YliG [Thermincola sp. JR]
 gi|296031522|gb|ADG82290.1| MiaB-like tRNA modifying enzyme YliG [Thermincola potens JR]
          Length = 439

 Score =  170 bits (431), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 123/448 (27%), Positives = 227/448 (50%), Gaps = 27/448 (6%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ D+  M  +    G++ V     AD++++NTC   ++A E+  + +     L
Sbjct: 8   SLGCNKNLVDTEVMMGLLAEAGFKIVEEEKSADILIVNTCGFIDEAKEESINAV-----L 62

Query: 91  KNSRIKEGGDL-LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR- 148
           + +R KE G+   ++VAGC+AQ   +E+L+  P ++ ++G     ++ +++  A  G R 
Sbjct: 63  ELARYKEEGNCKALIVAGCLAQRYKDELLKEMPEIDGIIGTGEIDKIVQVVRDAAAGMRP 122

Query: 149 --VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
             V D ++  +    R       +      TA++ I EGCD  C++C +P  RG   SR 
Sbjct: 123 ELVTDREFIYDHTLPR-------WQSTPPYTAYVKIAEGCDNRCSYCAIPGIRGGYRSRP 175

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK-GLVRLRY 265
              ++ E   L+  GV E+ L+ Q+   + G  + G +   ++L+  ++ +    +R+ Y
Sbjct: 176 KESILQEVNDLVRRGVKEVILIAQDTTRY-GTDIYG-RYALAELIQEIASLPVHWIRILY 233

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
             ++P  ++D LI+       +  YL +P+Q     I+K+MNR+    E  ++++R+R  
Sbjct: 234 --AYPTRITDDLIQIIRGEPKVCKYLDMPIQHVDKDIIKAMNRQGDREEIMKLVNRLRKE 291

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P I + +  IVGFPGET+  F+  ++ V +  + +   F YS    TP   +  QV E 
Sbjct: 292 IPGITLRTTLIVGFPGETEAQFQNLLEFVREAKFDRLGVFTYSREESTPAGMLANQVPEE 351

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL-VGRS----PWLQSVV- 439
           VK +R   + ++ ++  +  N   +G  I V++E    +  ++ VGRS    P +  +V 
Sbjct: 352 VKIKRRDLIMQEQQKISLQKNRQKIGSTILVMVEGISADNPEIYVGRSDADAPEIDGLVY 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGEL 467
            +    N GDI++V+ITD     L GE+
Sbjct: 412 FSGPALNPGDIVQVKITDASEYDLIGEV 439


>gi|115525046|ref|YP_781957.1| hypothetical protein RPE_3040 [Rhodopseudomonas palustris BisA53]
 gi|122295815|sp|Q07M57|RIMO_RHOP5 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|115518993|gb|ABJ06977.1| MiaB-like tRNA modifying enzyme YliG [Rhodopseudomonas palustris
           BisA53]
          Length = 441

 Score =  170 bits (431), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 130/466 (27%), Positives = 219/466 (46%), Gaps = 48/466 (10%)

Query: 18  VDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA 77
           ++Q   P+  FV S GC   + DS R+     ++GYE     D AD++++NTC   + A 
Sbjct: 1   MEQAPAPKISFV-SLGCPKALVDSERIITRLRAEGYELARKHDGADIVIVNTCGFLDSAK 59

Query: 78  EKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLP 137
           ++    +G         + E G   V+V GC+  AE E+I    P V  + GPQ Y  + 
Sbjct: 60  QESLGAIGEA-------MAENGK--VIVTGCMG-AEPEQIEAAYPNVLSITGPQQYESVL 109

Query: 138 ELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197
           E + RA         D           +   G        A+L I EGC+  C+FC++P 
Sbjct: 110 EAVHRALPPIHNPHLDL----------MPPQGIKLTPRHYAYLKISEGCNNRCSFCIIPK 159

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCT 246
            RG  +SR  ++V+ EA +L+  GV E+ ++ Q+ +A           W+ + +   +  
Sbjct: 160 LRGDLVSRPAAEVLREAEQLVKAGVKELLVVSQDTSAYGVDLKYAESQWQDRAV---RAR 216

Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306
           F DL   L  +   VRL+Y   +P       + A G    ++PYL +P Q  +  +L  M
Sbjct: 217 FYDLAKELGSLGAWVRLQYVYPYPHVDEVIELMAKG---AVLPYLDIPFQHAASSVLTRM 273

Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
            R     +    I R R   PD+A+ S FIVGFPGET+ +F   +D +++    +  +FK
Sbjct: 274 KRPAAQDKTLARIKRWRETCPDLALRSTFIVGFPGETEQEFAELLDWLEEAEIDRLGAFK 333

Query: 367 YSPRLGTPGSNMLEQVDENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK 423
           Y P  G   + + +Q+   VK +R   L+  Q+K+  +++      VG   +V+I++ G 
Sbjct: 334 YEPVQGAASNALPDQIPAEVKQQRWDALMARQQKISARRLKRK---VGTRQQVIIDEAGP 390

Query: 424 E--KGKLVGRSPWLQS-VVLNSKNH-NIGDIIKVRITDVKISTLYG 465
              KG+    +P +   V L+S+    +G+++  +I       L+G
Sbjct: 391 NGAKGRSKADAPQIDGHVYLSSRRPLRVGELVTAKIDRADAYDLHG 436


>gi|15618388|ref|NP_224673.1| hypothetical protein CPn0477 [Chlamydophila pneumoniae CWL029]
 gi|4376761|gb|AAD18617.1| Hypothetical Protein CPn_0477 [Chlamydophila pneumoniae CWL029]
          Length = 421

 Score =  170 bits (431), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 122/443 (27%), Positives = 218/443 (49%), Gaps = 44/443 (9%)

Query: 33  GCQMNVYDSLRMEDMFFSQGYERV-NSMDDADLIVLNTCHIREKAAEKVYSFLGR--IRN 89
           GC++N Y+     D     GY+ V +S   ADL ++NTC +   A        GR  +R 
Sbjct: 16  GCRVNQYEVQAYRDQLTILGYQEVLDSEIPADLCIINTCAVTASAESS-----GRHAVRQ 70

Query: 90  LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149
           L     ++     +VV GC+ +++ E          +V   +                R+
Sbjct: 71  L----CRQNPTAHIVVTGCLGESDKEFFASLDRQCTLVSNKEK--------------SRL 112

Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209
           ++  +S +  F    I    ++ +    AF+ +Q+GC+ FC++C++PY RG  +SR   +
Sbjct: 113 IEKIFSYDTTFPEFKI----HSFEGKSRAFIKVQDGCNSFCSYCIIPYLRGRSVSRPAEK 168

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSH 269
           ++ E   ++D G  E+ + G NV    G   DGE+ + + L+  +  I G+ R+R ++  
Sbjct: 169 ILAEIAGVVDQGYREVVIAGINV----GDYCDGER-SLASLIEQVDRIPGIERIRISSID 223

Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329
           P D+++ L +A        P  HL +QSGS+ ILK MNR+++  ++   +++ R+  P  
Sbjct: 224 PDDITEDLHRAITSSRHTCPSSHLVLQSGSNSILKRMNRKYSRGDFLDCVEKFRASDPRY 283

Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAE 389
           A ++D IVGFPGE+D DF  T+ +++ +G+ +  SF +S R  T       Q+   V  E
Sbjct: 284 AFTTDVIVGFPGESDQDFEDTLRIIEDVGFIKVHSFPFSARRRTKAYTFDNQIPNQVIYE 343

Query: 390 R---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH- 445
           R   L  + K++ ++++      +G+  EVL+EK   +     G SP+ + V        
Sbjct: 344 RKKYLAEVAKRVGQKEMMKR---LGETTEVLVEKVTGQVA--TGHSPYFEKVSFPVVGTV 398

Query: 446 NIGDIIKVRITDVKISTLYGELV 468
            I  ++ VR+  V+   L GE+V
Sbjct: 399 AINTLVSVRLDRVEEEGLIGEIV 421


>gi|182679251|ref|YP_001833397.1| MiaB-like tRNA modifying enzyme YliG [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|238065293|sp|B2IHC3|RIMO_BEII9 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|182635134|gb|ACB95908.1| MiaB-like tRNA modifying enzyme YliG [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 449

 Score =  170 bits (431), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 131/461 (28%), Positives = 223/461 (48%), Gaps = 43/461 (9%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  FV S GC   + DS R+     ++GYE   S   AD +++NTC   + A  +  + 
Sbjct: 16  PKISFV-SLGCPKALVDSERIITRLRAEGYELTKSHRGADAVIVNTCGFLDSAKAESLAA 74

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G     +N +I        +V GC+  AE E +    P +  + GPQ Y  + E +  A
Sbjct: 75  IGEA-AAENGKI--------IVTGCMG-AEPESLQTAYPDLFAITGPQAYESVMEAVHAA 124

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
                +   D    + F  L    G     R   A+L I EGC+  C+FC++P+ RG  +
Sbjct: 125 -----IAPPD----NPFTELVPPQGIKLTPRHY-AYLKISEGCNNRCSFCIIPHLRGDLV 174

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-----RGKGLDGEKC---TFSDLLYSLS 255
           SR + +++ EA KL+  GV EI ++ Q+ +A+       + L G++     F DL   L 
Sbjct: 175 SRPIGEILQEAEKLVSAGVKEILVVSQDTSAYGVDLKYAETLYGDRTLRSKFIDLARELG 234

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
            +   VRL Y   +P   +   + A G +   +PYL +P Q  S  +L++M R     + 
Sbjct: 235 SLGVWVRLHYIYPYPHVDAVLDLMAEGKI---LPYLDIPFQHASRNVLRAMRRPGDQEKT 291

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
              I+  R + PD+ + S FIVGFPGET+DDF+  +D + +    +  +FKY P    P 
Sbjct: 292 LSRIEEWRKLCPDLTLRSTFIVGFPGETEDDFQILLDWLSEAKLDRVGAFKYEPVADAPA 351

Query: 376 SNM-LEQVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLV 429
           +++ L  V   V+    +R +  Q+K+  +++      +G+ + V+I++   +   G+  
Sbjct: 352 NDLDLTPVAPEVQTRRYQRFMEHQQKISARRLREK---IGKHVSVIIDEASPKAAIGRTK 408

Query: 430 GRSPWLQSVV--LNSKNHNIGDIIKVRITDVKISTLYGELV 468
           G +P +   V     +   +GDI+KV+I       L+G+ V
Sbjct: 409 GDAPSIDGKVHITTHRPLRVGDIVKVKIEAADAYDLHGKAV 449


>gi|94495525|ref|ZP_01302105.1| hypothetical protein SKA58_05735 [Sphingomonas sp. SKA58]
 gi|94424913|gb|EAT09934.1| hypothetical protein SKA58_05735 [Sphingomonas sp. SKA58]
          Length = 441

 Score =  170 bits (431), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 127/416 (30%), Positives = 195/416 (46%), Gaps = 47/416 (11%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N+ +S  +  M   Q           DLIV+N+C +  +A  +    + R R  
Sbjct: 8   TMGCRLNIAESEAIRQMAAEQD----------DLIVVNSCAVTAEAVRQTRQAIRRAR-- 55

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG------PQTYYRLPELLERAR 144
                +E  D  ++V GC AQ E +     +  V+ V+G        TY  LP  +  + 
Sbjct: 56  -----RERPDARILVTGCAAQTEPQTFAAMAE-VDAVIGNREKMEAATY--LPPFVS-SE 106

Query: 145 FGKRVVDTD-----YSVEDKFER---------LSIVDGGYNRKRGVT----AFLTIQEGC 186
             KR+   D           FE+         +S+ D   +          AFL +Q GC
Sbjct: 107 VEKRLAHPDRFSTSLETNGPFEQSAKVRVADIMSVRDTAPHMASAFADHARAFLEVQNGC 166

Query: 187 DKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT 246
           D  CTFC++PY RG   S     VVD+AR+L+D G  EI L G +V ++ G  L G    
Sbjct: 167 DHRCTFCIIPYGRGNSRSVPAGAVVDKARELVDAGYREIVLTGVDVTSY-GPDLPGAPTL 225

Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306
              +   L  +  L RLR ++    +M D L         +MP++HL +Q+G D ILK M
Sbjct: 226 GLLVERILKGVPDLPRLRLSSIDSVEMDDRLFDLIAHEPRMMPHVHLSLQAGDDMILKRM 285

Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
            RRH+  +  +I++R+++ RPDI+I +D I GFP E D  F  ++ L+D         F 
Sbjct: 286 KRRHSRADAVRIVERLKAARPDISIGADIIAGFPTEDDAMFTRSLALIDDCAIVHGHIFP 345

Query: 367 YSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422
           YSPR GTP + M  QVD      R   L+     ++ ++  + +G    VL+E+ G
Sbjct: 346 YSPREGTPAARM-PQVDRPTIKARAARLRAACANRRDAWLRSLIGTQQSVLVERSG 400


>gi|84503500|ref|ZP_01001555.1| MiaB-like Radical SAM protein [Oceanicola batsensis HTCC2597]
 gi|84388178|gb|EAQ01131.1| MiaB-like Radical SAM protein [Oceanicola batsensis HTCC2597]
          Length = 417

 Score =  170 bits (431), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 130/433 (30%), Positives = 206/433 (47%), Gaps = 40/433 (9%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  M+++  + G E        + +V+NTC +  +A  K    + R+R  
Sbjct: 9   TLGCRLNAYETEAMKELAAAAGVE--------NAVVVNTCAVTAEAVRKARQDIRRLR-- 58

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVV-----VGPQTYYRL-PELLERAR 144
                +E     ++V GC AQ E E       + +VV     +  +T+    P+L+    
Sbjct: 59  -----RENPQARIIVTGCAAQTEPETFAAMDEVDHVVGNSEKMQAETWKGFAPDLIGETE 113

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
             + +VD   SV +    L  +DG + R R   A++ +Q GCD  CTFC++PY RG   S
Sbjct: 114 --RVIVDDIMSVTETAGHL--IDG-FGRHR---AYVQVQNGCDHRCTFCIIPYGRGNSRS 165

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS-LSEIKGLVRL 263
                VVD+ ++L+D G  E+ L G ++ +W G  L        DL+   L  +  L RL
Sbjct: 166 VPTGVVVDQIKRLVDRGFNEVVLTGVDLTSW-GADLPATP-RLGDLVRRILRLVPDLPRL 223

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R ++    +    L++A      LMP+LHL +Q+G D ILK M RRH   +  +  +  R
Sbjct: 224 RISSIDSIEADPALMEAIATEPRLMPHLHLSLQAGDDMILKRMKRRHLRDDAIRFCEEAR 283

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
            +RP++   +D I GFP ETD+ F  ++ L+++ G      F YSPR GTP + M  QV 
Sbjct: 284 RLRPEMTYGADIIAGFPTETDEMFENSLRLIEECGLTWLHVFPYSPRPGTPAARM-PQVR 342

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
                ER   L+     Q  +     VG    VL E      G  +GR+     V  + +
Sbjct: 343 GPAIKERAARLRAAGERQVAAHLAGQVGTERTVLTE------GPRMGRTEQFAEVRFD-R 395

Query: 444 NHNIGDIIKVRIT 456
           +   G +I  RI 
Sbjct: 396 DMPEGRLITARIA 408


>gi|254292479|ref|YP_003058502.1| MiaB-like tRNA modifying enzyme [Hirschia baltica ATCC 49814]
 gi|254041010|gb|ACT57805.1| MiaB-like tRNA modifying enzyme [Hirschia baltica ATCC 49814]
          Length = 435

 Score =  170 bits (431), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 131/442 (29%), Positives = 202/442 (45%), Gaps = 33/442 (7%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y+S  M +     G          D I++NTC +  +A  +    + R R  
Sbjct: 23  TLGCRLNSYESEVMRNHASDAGLN--------DAIIVNTCAVTNEAVRQARQTIRRAR-- 72

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGP----QTYYRLPELLERARFG 146
                K+  D  ++V GC AQ +  ++    P V  V+G     Q     P  L      
Sbjct: 73  -----KDRPDTPIIVTGCAAQVD-PDMFANMPEVTRVIGNNEKMQAETFQPANLLNETAP 126

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           K VV+   SV +    L  VDG   R R   AF+ +Q GCD  CTFC++PY RG   S  
Sbjct: 127 KAVVNDIMSVTETAGHL--VDGLEGRAR---AFVQVQTGCDHRCTFCIIPYGRGNSRSVP 181

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
             +VVD+ R+L+  G  E+ L G ++ +W G  L       + +   L     L +LR +
Sbjct: 182 AGEVVDQVRQLVAKGHYEVVLTGVDLTSW-GADLPNAPNLGNLVARILKLAPDLKQLRLS 240

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
           +    ++ D L         + P+LHL  QSG + ILK M RRH+  +   +  R+R+ R
Sbjct: 241 SIDAIEIDDQLFDLIAHDKRIAPHLHLSFQSGDNMILKRMKRRHSREDAINLCQRLRAAR 300

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           P+I+  +D I GFP ETD+ F  TM  VD+ G      F YS R GTP +  + Q++  +
Sbjct: 301 PEISFGADLIAGFPTETDEMFANTMACVDECGLDYLHVFPYSARPGTPAAR-IPQLNGEI 359

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHN 446
             +R   L+ K +E+ +   D  VG   + L+E  G+       R P    + +      
Sbjct: 360 IKDRAAQLRDKGQERLLLRLDRHVGTTQDALVEMGGR------ARLPDFAPIRIEGDAPK 413

Query: 447 IGDIIKVRITDVKISTLYGELV 468
            G ++ + I       L G L+
Sbjct: 414 PGSVVTLDIHSRDDKDLIGRLL 435


>gi|163757349|ref|ZP_02164438.1| hypothetical protein HPDFL43_18102 [Hoeflea phototrophica DFL-43]
 gi|162284851|gb|EDQ35133.1| hypothetical protein HPDFL43_18102 [Hoeflea phototrophica DFL-43]
          Length = 455

 Score =  170 bits (431), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 131/449 (29%), Positives = 207/449 (46%), Gaps = 42/449 (9%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V ++GC++N ++S  M     + G          + +++NTC +   A  +    + R+R
Sbjct: 3   VVTFGCRLNTFESETMRKAAETAGLN--------NAVLVNTCAVTADAVRQARQTIRRLR 54

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG------PQTYYRLPELLER 142
                  ++     +VV+GC AQ E E        V+ V+G        TY +LP+    
Sbjct: 55  -------RDNPHARIVVSGCAAQTEPETFAGMDE-VDAVIGNDAKGEAATYRKLPDFGVS 106

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
                RV D   +V +   ++     G+ R     AF+ +Q GCD  CTFCV+PY RG  
Sbjct: 107 QSEKIRVNDI-MAVRETAPQMIEAVAGHAR-----AFVQVQNGCDHRCTFCVIPYGRGNS 160

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            S  +  VVD+ R L++NG  E+ + G +  ++ G  L G     +     L++I  L R
Sbjct: 161 RSVPMGAVVDQIRTLVENGYQEVVITGVDATSY-GADLPGRPSLGTLARTILNQIPELQR 219

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LR ++    ++ D L+    D    MPYLHL +Q G D ILK M RRH+  +       +
Sbjct: 220 LRLSSIDSIEVDDALMDLIADEPRFMPYLHLSLQHGDDMILKRMKRRHSRDDAVSFCRTV 279

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R +RP  A  +D I GFP ET++ F  ++++++  G +    F YSPR GTP + M  Q+
Sbjct: 280 RDLRPGFAFGADLIAGFPTETEEMFARSLEIIEACGISFLHVFPYSPREGTPAARM-PQL 338

Query: 383 DENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV 439
           D  +   +A RL    +K     +    A  G I   L+E  G      + R+     VV
Sbjct: 339 DRGLIKTRAARLRDSGEKAYRAHLG-EMARTGGIHSALVEFSG------IARTENFTPVV 391

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
             +     G +  +R+T      L GEL 
Sbjct: 392 --APGAPKGQMALIRVTGQDGERLTGELA 418


>gi|115351773|ref|YP_773612.1| ribosomal protein S12 methylthiotransferase [Burkholderia ambifaria
           AMMD]
 gi|122323114|sp|Q0BEZ5|RIMO_BURCM RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|115281761|gb|ABI87278.1| SSU ribosomal protein S12P methylthiotransferase [Burkholderia
           ambifaria AMMD]
          Length = 453

 Score =  170 bits (431), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 134/477 (28%), Positives = 218/477 (45%), Gaps = 61/477 (12%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  FV S GC   + DS ++     ++GYE   + D ADL+V+NTC   ++A ++    
Sbjct: 5   PKVGFV-SLGCPKALVDSEQIITQLRAEGYEISGTYDGADLVVVNTCGFIDEAVQESLDA 63

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCV---AQAEGEEILRR-SPIVNVVVGPQTYYRLPEL 139
           +G         + E G   V+V GC+   + A G  ++    P V  V GP     + + 
Sbjct: 64  IGEA-------LTENGK--VIVTGCLGAKSSASGSNLIEEVHPKVLAVTGPHAVGEVMQA 114

Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           +  +   K          D F  L +   G        A+L I EGC+  CTFC++P  R
Sbjct: 115 V-HSHLPKP--------HDPFVDL-VPAAGIKLTPRHYAYLKISEGCNHRCTFCIIPSMR 164

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFS 248
           G  +SR +++V+ EA  L  +GV E+ ++ Q+ +A           W GK +   K   +
Sbjct: 165 GDLVSRPVAEVMLEAENLFKSGVKELLVISQDTSAYGVDVKYRTGFWNGKPI---KTRMT 221

Query: 249 DLLYSLSEIKG----LVRLRYTTSHPRD------MSDCLIKAHGDLDVLMPYLHLPVQSG 298
           DL+ +L E+       VRL Y   +P        M+D   K H     ++PYL +P Q  
Sbjct: 222 DLVAALGELAAQYGAWVRLHYVYPYPSVDEVIPLMADGPFKGH-----VLPYLDVPFQHA 276

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
              +LK M R   A +  + + + R + PD+ I S FI GFPGET++ F   +D + +  
Sbjct: 277 HPEVLKRMKRPANAEKVLERVQKWREICPDLTIRSTFIAGFPGETEEQFETLLDFIREAE 336

Query: 359 YAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI 418
             +   F YSP  G   + +   + ++V+ ER     +   E         VG+ ++VLI
Sbjct: 337 LDRVGCFAYSPVEGASANELDGALPDDVREERRARFMEVAEEVSAQRIQRKVGKTLKVLI 396

Query: 419 EKHGKEK--GKLVGRSPWLQSVVL------NSKNHNIGDIIKVRITDVKISTLYGEL 467
           ++   E   G+    +P +  VV        SK + +GD + V+IT      L+GE+
Sbjct: 397 DEVSAEGGIGRTAADAPEIDGVVYVEPATKASKRYKVGDFVSVKITGADGHDLWGEV 453


>gi|311748439|ref|ZP_07722224.1| 2-methylthioadenine synthetase [Algoriphagus sp. PR1]
 gi|311302786|gb|EAZ81201.2| 2-methylthioadenine synthetase [Algoriphagus sp. PR1]
          Length = 437

 Score =  170 bits (431), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 123/448 (27%), Positives = 219/448 (48%), Gaps = 38/448 (8%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNS--MDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           + GC  N+ DS  +       G    +    DD ++I++NTC   + A ++    +    
Sbjct: 15  TMGCSKNLVDSEVLLTQLKGNGINASHESGTDDNNIIIINTCGFIDNAKQESVDTI---- 70

Query: 89  NLKNSRIKEGGDL-LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147
            L+    KE G +  V V GC++Q   +++ +  P V+   G +    LP +L++ +   
Sbjct: 71  -LQYVDAKEQGLVDKVYVTGCLSQRYKDDLEKEIPQVDAFFGTRD---LPAILKKFK--- 123

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
                DY  E   ERL      Y       A++ I EGCD+ C+FC +P  RG  +SR +
Sbjct: 124 ----ADYKHELVGERLLTHSSHY-------AYMKISEGCDRPCSFCAIPLMRGGHVSRPI 172

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYT 266
            ++V EA     NG  E+ L+ Q+   +   GLD  +K   ++L+  LS++ G+  +R  
Sbjct: 173 EELVKEAEHKAANGTKELLLIAQDSTYY---GLDIYKKRNLAELMRRLSDVNGIDWIRLH 229

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
            ++P      +I+   + + +  YL +P+Q GS  +LK+M R  T  +   +I  IR + 
Sbjct: 230 YAYPTGFPMEVIEVMKERENICNYLDIPLQHGSTDVLKAMRRGTTRQKQEDLIHSIRDIL 289

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           PDIAI +  I G PGE + +++  +D ++++ + +   F YS    T   +M + + + V
Sbjct: 290 PDIAIRTTLIAGHPGEGEKEYQEMVDFIERMKFERLGVFTYSHEENTHAFSMEDSIPQEV 349

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPW-----LQSVVLN 441
           K ER   L +   +     N   +G+  +VLI+K  KE G  +GR+ +        V+++
Sbjct: 350 KQERANNLMEIQEQISYDLNQEKIGKTFKVLIDK--KEGGHFIGRTEYDSVEVDNEVLID 407

Query: 442 SKNH--NIGDIIKVRITDVKISTLYGEL 467
           +  H   +GD + V++T+     LY E+
Sbjct: 408 ASKHYCRVGDFVNVKVTEATEFDLYAEV 435


>gi|294664557|ref|ZP_06729900.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292605665|gb|EFF48973.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 363

 Score =  170 bits (431), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 122/377 (32%), Positives = 183/377 (48%), Gaps = 34/377 (9%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  FV S GC   + DS R+      +GY+ V S D AD++V+NTC   + A  +    
Sbjct: 6   PKVGFV-SLGCPKALVDSERILTQLRVEGYDIVPSYDVADVVVVNTCGFIDSAVTESLDA 64

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G   N             V+V GC+ +   E+I    P V  V GPQ Y  + E +  A
Sbjct: 65  IGEAMNANGK---------VIVTGCLGK-RPEQIREAYPQVLAVSGPQDYQSVMEAVHAA 114

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
              +          D F  L + D G        A+L I EGC+  C+FC++P  RG  +
Sbjct: 115 LPPR---------HDPFVDL-VPDYGIKLTPRHYAYLKISEGCNHRCSFCIIPSMRGDLV 164

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS---------L 254
           SR + +V+ EA +L+  GV E+ ++ Q+ +A+ G  L   +  + D LY          L
Sbjct: 165 SRPVDEVLREAERLVRGGVKELLVVSQDTSAY-GVDLKYAERPWRDRLYQTRMKALCEGL 223

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
           SE+    RL Y   +P       + A G L   +PYL +P Q  S RILK M R     +
Sbjct: 224 SELGVWTRLHYVYPYPHVDDVIPLMAEGRL---LPYLDIPFQHASPRILKLMKRPGAVEK 280

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
             + + R +++ P+I + S FIVGFPGETD +F + +D +D+    +  +F YSP  G  
Sbjct: 281 TLERMQRWKAMCPEITVRSTFIVGFPGETDAEFESLLDFLDQAQLDRVGAFAYSPVDGAS 340

Query: 375 GSNMLEQVDENVKAERL 391
            + + + V E VK ERL
Sbjct: 341 ANALPDPVPEEVKQERL 357


>gi|84514983|ref|ZP_01002346.1| MiaB-like tRNA modifying enzyme [Loktanella vestfoldensis SKA53]
 gi|84511142|gb|EAQ07596.1| MiaB-like tRNA modifying enzyme [Loktanella vestfoldensis SKA53]
          Length = 422

 Score =  170 bits (430), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 118/398 (29%), Positives = 196/398 (49%), Gaps = 32/398 (8%)

Query: 30  KSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRN 89
            ++GC++N Y++  M+++    G +        D +++NTC +  +A  K    + ++R 
Sbjct: 12  SNHGCRLNAYETEAMKELAAQAGVQ--------DAVIVNTCAVTAEAVRKARQDIRKLR- 62

Query: 90  LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG------PQTYYRL-PELLER 142
                 ++     ++V GC AQ E +   + +  V++V+G      P T+ RL P+L+ +
Sbjct: 63  ------RDHPGARIIVTGCAAQTEPDTFAKMAE-VDLVIGNTEKMDPATWARLTPDLIGQ 115

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
               +  VD   SV +    L  +DG   R R   A++ +Q GCD  CTFC++P+ RG  
Sbjct: 116 TEPVQ--VDDIMSVTETAGHL--IDGFGTRSR---AYVQVQNGCDHRCTFCIIPFGRGNS 168

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            S     VVD+ ++L+D G  E+ L G ++ +W G  L         ++  L  +  L R
Sbjct: 169 RSVPAGVVVDQIKRLVDRGYAEVVLTGVDLTSW-GADLPSAPKLGDLVMRILKLVPDLPR 227

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LR ++    ++ D L+ A      LMP+LHL +Q G D ILK M RRH   +  +  +  
Sbjct: 228 LRISSIDSIEVDDNLLAAIATEPRLMPHLHLSLQHGDDLILKRMKRRHLRDDAIRFCETA 287

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R +RPD+   +D I GFP ET+D F +++ LV +        F YS R GTP + M   V
Sbjct: 288 RRLRPDMTFGADIIAGFPTETEDMFASSLALVRECDLTWLHVFPYSARPGTPAARM-PAV 346

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
           +     +R   L+     Q  S   A +G+   +L+E 
Sbjct: 347 NGAAIKDRAARLRAAGDAQVSSHLAAQIGRTHHILMES 384


>gi|114567094|ref|YP_754248.1| MiaB-like tRNA modifying enzyme [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
 gi|114338029|gb|ABI68877.1| MiaB-like tRNA modifying enzyme [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
          Length = 456

 Score =  170 bits (430), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 117/396 (29%), Positives = 203/396 (51%), Gaps = 21/396 (5%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N  ++ ++++ F  +GY+ V+  + ADL ++NTC +   +  K  +       +
Sbjct: 8   TLGCKVNQVETEQLKEKFIQRGYQLVDFNESADLYIVNTCTVTHSSDRKSRA-------M 60

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE-----RARF 145
                +     +VV  GC+AQ +  + L   P +N++VG Q    + EL+E     R+  
Sbjct: 61  LRRAARRNPGAMVVATGCLAQVDAAQ-LAAIPGLNLIVGSQQKEAILELIEGQVSSRSES 119

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
              +V        K   + I    + R R   AF+ IQ+GC  +C++C+VP+ RG   S+
Sbjct: 120 EPLIVCPPLVAGKKLPPV-IYSKRHERSR---AFVKIQDGCQSYCSYCIVPFARGPSRSK 175

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKGLVRLR 264
               V  E ++L+D G  EI L G +   +   G D E    S LL  L + ++G  R+R
Sbjct: 176 LPEDVAAELQQLVDLGYHEIVLTGIHTGLY---GNDLEDWNLSRLLRLLFARVEGNYRIR 232

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
            ++  P ++ + L++     + L  + H+P+QSGS RIL++MNRR+    Y +++  I  
Sbjct: 233 LSSLEPVEIDEELLEMAAGGERLCRHFHIPLQSGSSRILRAMNRRYDREFYYKLVQHIVQ 292

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
                A+++D +VGFPGE   D++ T+ L+  +       FKYS R GT  + M  QV +
Sbjct: 293 RVKGAAVTADVMVGFPGEEKKDYQDTLALLQDLPVLDLHVFKYSKRPGTAAAKMEPQVSD 352

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
             K  R   L +    ++ SF +  +GQ +EVL+E+
Sbjct: 353 REKEMRSAELIQLAEAKKRSFINQQLGQELEVLVEQ 388


>gi|284040196|ref|YP_003390126.1| MiaB-like tRNA modifying enzyme YliG [Spirosoma linguale DSM 74]
 gi|283819489|gb|ADB41327.1| MiaB-like tRNA modifying enzyme YliG [Spirosoma linguale DSM 74]
          Length = 437

 Score =  170 bits (430), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 133/454 (29%), Positives = 222/454 (48%), Gaps = 49/454 (10%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQ------GYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + GC  N+ DS    ++ F+Q           +  DDA+++V+NTC   + A E+  + +
Sbjct: 15  TLGCSKNLVDS----EVLFTQLKGNGMNVTHESKKDDANIVVINTCGFIDNAKEESINTI 70

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R  + K + I +     V V GC++    +E+    P V+   G      LP +L+  R
Sbjct: 71  LRYVDAKEAGIVDK----VYVTGCLSHRYKDELEVEMPTVDAWFGTN---ELPRMLKTLR 123

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
                   DY  E   ERL      +       A+L I EGCD+ C+FC +P  RG  +S
Sbjct: 124 -------ADYKHELVGERLLTTPAHF-------AYLKIAEGCDRPCSFCAIPLMRGGHVS 169

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRL 263
           R + +++ EAR L   G  E+ L+ Q++  +   GLD  +K   +DL+  L++++G+  +
Sbjct: 170 RPIDELLTEARSLARRGTKELILIAQDLTYY---GLDLYKKRNLADLIDQLADVEGIDWI 226

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R   ++P      ++    +   +  YL +P+Q+GS  +LK M R  T  +   +I+ IR
Sbjct: 227 RLQYAYPSGFPMDILDVMRNRPNVCNYLDMPLQTGSTELLKLMRRGITREKTESLIETIR 286

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              PDI + +  IVG PGET+  F+ T D V+++ + +   F YS    T    M + + 
Sbjct: 287 EKVPDITLRTTLIVGHPGETEAMFQETYDFVERMRFDRLGVFTYSHEDDTHSFTMPDDIP 346

Query: 384 ENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQ 436
            ++K ER   L+ LQ+ + ++    N   VG+  +VL ++  KE G  +GR    SP + 
Sbjct: 347 ADIKQERADELMDLQQGISQE---LNQQKVGKTYKVLFDR--KEGGYFIGRTEADSPEVD 401

Query: 437 SVVLNSKNH--NIGDIIKVRITDVKISTLYGELV 468
           + VL        +GD   VRI   +   LYGE+V
Sbjct: 402 NEVLVPATQYVRLGDFANVRIDRAEEFDLYGEVV 435


>gi|218884393|ref|YP_002428775.1| RNA modification enzyme, MiaB family [Desulfurococcus kamchatkensis
           1221n]
 gi|218766009|gb|ACL11408.1| RNA modification enzyme, MiaB family [Desulfurococcus kamchatkensis
           1221n]
          Length = 432

 Score =  170 bits (430), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 123/408 (30%), Positives = 208/408 (50%), Gaps = 38/408 (9%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R ++++YGC +N  D   M +    +G+E VNS++DAD +++NTC +R    +  Y  + 
Sbjct: 2   RVYIETYGCALNKSDEALMVENILREGHELVNSIEDADTLIINTCIVR---LDTEYHMVK 58

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           RIR L     + G  L  +VAGC+A+AE   +L+ +P  ++V  PQ    + E+L+    
Sbjct: 59  RIRELYEVASRTGKKL--IVAGCMAKAEPYTVLKIAPEASLV-SPQNSALITEVLKTR-- 113

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKR-GV-----TAFLTIQEGCDKFCTFCVVPYTR 199
           GK +               ++DG   R R G+      A + IQEGC   C+FC+  + R
Sbjct: 114 GKVI---------------LIDGLRERDRIGIHVEDRIAPIPIQEGCLSNCSFCITKHAR 158

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC-TFSDLLYSLSE-I 257
            I +S  +  VV    + + NG  EI L G ++  +   GLD  K     +L+  +S  +
Sbjct: 159 RILVSHGIDAVVKAVERAVRNGAVEIQLTGMDLGTY---GLDLYKTRKLPELVKEVSRRV 215

Query: 258 KGLVRLRY---TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
            G   +R       H R + D LI A  +   +  +LH+P+QSGS+++L  M R ++  E
Sbjct: 216 SGEYMIRIGMINPEHLRYILDDLIDAINESSKVYRFLHIPLQSGSNKVLSVMRRNYSVEE 275

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
           Y +I++  +S  P ++I++D IVG P E ++DF  T+ ++ ++ + +     YS R  T 
Sbjct: 276 YIEIVNEAKSRIPGVSIATDIIVGHPMEDEEDFNETLKVIRELEFERVHLAGYSIRPLTY 335

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422
            ++ L QV   VK ER+L   + + E  +      VG+ +E    +H 
Sbjct: 336 SAS-LPQVPTRVKKERVLRALQVIEEVGLKIRLKYVGKEVECFTTEHS 382


>gi|153954068|ref|YP_001394833.1| hypothetical protein CKL_1443 [Clostridium kluyveri DSM 555]
 gi|238065368|sp|A5N854|RIMO_CLOK5 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|146346949|gb|EDK33485.1| Conserved hypothetical protein [Clostridium kluyveri DSM 555]
          Length = 446

 Score =  170 bits (430), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 133/439 (30%), Positives = 219/439 (49%), Gaps = 30/439 (6%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N  DS  +     S  YE V     AD I++NTC   E A ++    +  +   
Sbjct: 10  SLGCDKNRVDSEIILGNVKS-AYEIVTDPKLADFIIINTCGFIESAKQESIDTILEMSQY 68

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
           K      G    +VV GC+AQ  G E++   P +++++G   Y +L E          + 
Sbjct: 69  KGKYNCRG----IVVTGCLAQRYGIELMELLPEIDIMLGVNDYDKLVE-----NINNFIS 119

Query: 151 DTDYSVED-KFERLSIVDGG-YNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           D    + +  +  L+I +G      +  TA+L I EGCD +CT+C++P  RG   SRS+ 
Sbjct: 120 DKQNKIHNCGYSDLNINEGKRILTTKSHTAYLRIAEGCDNYCTYCIIPKIRGKYRSRSIE 179

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYTT 267
            ++ E  +L   GV E+ L+ Q+   +   G+D   K    +L+ S+S+I+G+  +R   
Sbjct: 180 NILQECNELSLRGVKEVILIAQDTTRY---GIDLYNKKMLPELMRSISKIEGIEWIRLLY 236

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
            +P ++++ +I      D +  Y+ +P+Q  SD ILK M RR    +  + I+ +R    
Sbjct: 237 CYPEEITEDIIDEIALNDKVCNYIDIPLQHISDNILKLMGRRGRKKDILRNINELRKKIN 296

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
           DI+I +  IVGFPGE+++DF+   + ++ I +     FKYS   GT    M +QV E +K
Sbjct: 297 DISIRTTIIVGFPGESEEDFKELKNFIENIKFDNLGVFKYSREEGTRAYKMKDQVSEELK 356

Query: 388 AER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVVL 440
             R   L+ LQK +     S     +G   +VL+E  GK++G   GR    +P +  V+ 
Sbjct: 357 TAREGELMMLQKHI---IYSMQKYKIGNKYKVLVE--GKKEGVWYGRNYAMAPDIDGVIY 411

Query: 441 --NSKNHNIGDIIKVRITD 457
             + K   +G +I V+IT+
Sbjct: 412 IKSKKELKVGTMIDVKITN 430


>gi|254245338|ref|ZP_04938659.1| hypothetical protein BCPG_00035 [Burkholderia cenocepacia PC184]
 gi|124870114|gb|EAY61830.1| hypothetical protein BCPG_00035 [Burkholderia cenocepacia PC184]
          Length = 461

 Score =  170 bits (430), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 132/475 (27%), Positives = 217/475 (45%), Gaps = 60/475 (12%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R  + S GC   + DS ++     ++GYE   S D ADL+V+NTC   ++A ++    +G
Sbjct: 14  RIGMVSLGCPKALVDSEQIITQLRAEGYEISGSYDGADLVVVNTCGFIDEAVQESLDAIG 73

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCV---AQAEGEEILRR-SPIVNVVVGPQTYYRLPELLE 141
                    + E G   V+V GC+   + A G  ++    P V  V GP     + + + 
Sbjct: 74  EA-------LTENGK--VIVTGCLGAKSSASGSNLIEEVHPKVLAVTGPHAVGEVMQAV- 123

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
            +   K          D F  L +   G        A+L I EGC+  CTFC++P  RG 
Sbjct: 124 HSHLPKP--------HDPFVDL-VPAAGIKLTPRHYAYLKISEGCNHRCTFCIIPSMRGD 174

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDL 250
            +SR +++V+ EA  L  +GV E+ ++ Q+ +A           W GK +   K   +DL
Sbjct: 175 LVSRPVAEVMLEAENLFKSGVKELLVISQDTSAYGVDVKYRTGFWNGKPI---KTRMTDL 231

Query: 251 LYSLSEIKG----LVRLRYTTSHPRD------MSDCLIKAHGDLDVLMPYLHLPVQSGSD 300
           + +L E+       VRL Y   +P        M++   K H     ++PYL +P Q    
Sbjct: 232 VAALGELAAQYGAWVRLHYVYPYPSVDEVIPLMAEGAFKGH-----VLPYLDVPFQHAHP 286

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
            +LK M R   A +  + + + R + PD+ I S FI GFPGET++ F   +D + +    
Sbjct: 287 EVLKRMKRPANAEKVLERVQKWREICPDLTIRSTFIAGFPGETEEQFETLLDFIREAELD 346

Query: 361 QAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
           +   F YSP  G   +++   + + V+ ER     +   E   +     VG+ ++VLI++
Sbjct: 347 RVGCFAYSPVEGASANDLDGALPDEVREERRARFMEVAEEVSANRMQRKVGKTLKVLIDE 406

Query: 421 HGKEK--GKLVGRSPWLQSVVL------NSKNHNIGDIIKVRITDVKISTLYGEL 467
              E   G+    +P +  VV        SK + +GD + V+IT      L+GE+
Sbjct: 407 VSAEGGIGRTAADAPEIDGVVYVEPAAKASKRYKVGDFVSVKITGADGHDLWGEV 461


>gi|170733145|ref|YP_001765092.1| ribosomal protein S12 methylthiotransferase [Burkholderia
           cenocepacia MC0-3]
 gi|238065302|sp|B1JT65|RIMO_BURCC RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|169816387|gb|ACA90970.1| MiaB-like tRNA modifying enzyme YliG [Burkholderia cenocepacia
           MC0-3]
          Length = 453

 Score =  170 bits (430), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 133/477 (27%), Positives = 219/477 (45%), Gaps = 61/477 (12%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  FV S GC   + DS ++     ++GYE   S D ADL+V+NTC   ++A ++    
Sbjct: 5   PKVGFV-SLGCPKALVDSEQIITQLRAEGYEISGSYDGADLVVVNTCGFIDEAVQESLDA 63

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCV---AQAEGEEILRR-SPIVNVVVGPQTYYRLPEL 139
           +G         + E G   V+V GC+   + A G  ++    P V  V GP     + + 
Sbjct: 64  IGEA-------LTENGK--VIVTGCLGAKSSASGSNLIEEVHPKVLAVTGPHAVGEVMQA 114

Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           +  +   K          D F  L +   G        A+L I EGC+  CTFC++P  R
Sbjct: 115 V-HSHLPKP--------HDPFVDL-VPAAGIKLTPRHYAYLKISEGCNHRCTFCIIPSMR 164

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFS 248
           G  +SR +++V+ EA  L  +GV E+ ++ Q+ +A           W GK +   K   +
Sbjct: 165 GDLVSRPVAEVMLEAENLFKSGVKELLVISQDTSAYGVDVKYRTGFWNGKPI---KTRMT 221

Query: 249 DLLYSLSEIKG----LVRLRYTTSHPRD------MSDCLIKAHGDLDVLMPYLHLPVQSG 298
           DL+ +L E+       VRL Y   +P        M++   K H     ++PYL +P Q  
Sbjct: 222 DLVAALGELAAQYGAWVRLHYVYPYPSVDEVIPLMAEGPFKGH-----VLPYLDVPFQHA 276

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
              +LK M R   A +  + + + R + PD+ I S FI GFPGET++ F   +D + +  
Sbjct: 277 HPEVLKRMKRPANAEKVLERVQKWREICPDLTIRSTFIAGFPGETEEQFETLLDFIREAE 336

Query: 359 YAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI 418
             +   F YSP  G   +++   + + V+ ER     +   E   +     +G+ ++VLI
Sbjct: 337 LDRVGCFAYSPVEGATANDLDGALPDEVREERRARFMEVAEEVSANRMQRKIGKTLKVLI 396

Query: 419 EKHGKEK--GKLVGRSPWLQSVVL------NSKNHNIGDIIKVRITDVKISTLYGEL 467
           ++   E   G+    +P +  VV        SK + +GD + V+IT      L+GE+
Sbjct: 397 DEVSAEGGIGRTAADAPEIDGVVYVEPAAKASKRYKVGDFVSVKITGADGHDLWGEV 453


>gi|330950628|gb|EGH50888.1| ribosomal protein S12 methylthiotransferase [Pseudomonas syringae
           Cit 7]
          Length = 440

 Score =  170 bits (430), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 147/474 (31%), Positives = 235/474 (49%), Gaps = 65/474 (13%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           PQ  FV S GC   + DS R+      +GYE V + +DAD++V+NTC   + A  +    
Sbjct: 3   PQIGFV-SLGCPKALVDSERILTQLRMEGYEVVATYEDADVVVVNTCGFIDTAKAESLEV 61

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G         IKE G   V+V GC+   +   I    P V  V GPQ Y          
Sbjct: 62  IGE-------AIKENGK--VIVTGCMG-VDANVIRDVHPSVLSVTGPQQY---------- 101

Query: 144 RFGKRVVDTDYSV----EDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
              ++VV+  + V    +D    + +V   G        A+L I EGC+  C+FC++P  
Sbjct: 102 ---EQVVNAVHDVVPPRQDHNPLIDLVPPQGVKLTPRHYAYLKISEGCNHSCSFCIIPSM 158

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA------WRGKGLDGE--KCTFSDL 250
           RG  +SR +  V+DEA++L+ +GV E+ ++ Q+ +A      +R    DG+  K   ++L
Sbjct: 159 RGKLVSRPVGDVLDEAKRLVKSGVKELLVISQDTSAYGVDVKYRTGFWDGQPVKTRMTEL 218

Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
             +L  +   VRL Y   +P       + A G    ++PYL +P Q  S +ILK M R  
Sbjct: 219 CQALGSMGVWVRLHYVYPYPHVDELIPLMAAGK---ILPYLDIPFQHASPKILKLMKR-- 273

Query: 311 TAYEYRQIIDRIRSVR---PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
            A+E + +  RI++ R   PD+ I S FIVGFPGET++DF+  +D + +    +   F+Y
Sbjct: 274 PAFEDKTLA-RIKNWREQCPDLIIRSTFIVGFPGETEEDFQYLLDWLTEAQLDRVGCFQY 332

Query: 368 SPRLGTPGSNMLEQ--VDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422
           SP  G P +N+L+   V ++VK    +R +  Q+ +   ++      +G+ IEVLI++  
Sbjct: 333 SPVEGAP-ANLLDAAIVPDDVKQDRWDRFMAHQQAISAARLQMK---IGKEIEVLIDEV- 387

Query: 423 KEKGKLVGR----SPWLQSVVL----NSKNHNIGDIIKVRITDVKISTLYGELV 468
            ++G  VGR    +P +   V     +      GD I  R+TD     L+ E++
Sbjct: 388 DDRGA-VGRCFFDAPEIDGNVFIGLEDGSTVQPGDKIMCRVTDADEYDLWAEML 440


>gi|163745241|ref|ZP_02152601.1| MiaB-like tRNA modifying enzyme, hypothetical [Oceanibulbus
           indolifex HEL-45]
 gi|161382059|gb|EDQ06468.1| MiaB-like tRNA modifying enzyme, hypothetical [Oceanibulbus
           indolifex HEL-45]
          Length = 417

 Score =  170 bits (430), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 128/442 (28%), Positives = 205/442 (46%), Gaps = 43/442 (9%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  M+++    G +        + +V+NTC +  +A  K    + ++R  
Sbjct: 8   TMGCRLNAYETEAMKELAEQAGLQ--------NAVVVNTCAVTAEAVRKARQDIRKLR-- 57

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
                K   +  ++V GC AQ E  E     P V+VV+G        E ++ A +     
Sbjct: 58  -----KAHPEARLIVTGCAAQTE-PETFNAMPEVDVVIGNT------EKMQGATWQGMAA 105

Query: 151 D----TDYSVEDKFERLS-----IVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           D    T+    D    ++     ++DG   R R   A++ +Q GCD  CTFC++PY RG 
Sbjct: 106 DFIGETETVQVDDIMSVTETAGHLIDGFGTRSR---AYVQVQNGCDHRCTFCIIPYGRGN 162

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
             S     VVD+ ++L+D G  E+ L G ++ +W G  L         ++  L  +  L 
Sbjct: 163 SRSVPAGVVVDQIKRLVDKGFNEVVLTGVDLTSW-GADLPATPKLGDLVMRILRLVPDLP 221

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           RLR ++    ++ + L++A      LMP+LHL +Q G D ILK M RRH   +  +    
Sbjct: 222 RLRISSIDSIEVDENLMQAIATEPRLMPHLHLSLQHGDDMILKRMKRRHLRDDAIRFAQE 281

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
            R++RPD+   +D I GFP ET+  F  +M LV++        F YS R GTP + M   
Sbjct: 282 ARALRPDMTFGADIIAGFPTETEAMFENSMKLVEECDLTWLHVFPYSARPGTPAARM-PA 340

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           V+     ER   L+     Q     +A  GQ+  VL+E         +GR+     V   
Sbjct: 341 VNGAAIKERAARLRAAGERQVQRHLEAQAGQMHAVLMEN------PHMGRTAQFTEVTFA 394

Query: 442 SKNHNIGDIIKVRITDVKISTL 463
                 GDI++ RIT +  + L
Sbjct: 395 VPQVE-GDIVQTRITGISGTQL 415


>gi|88705942|ref|ZP_01103650.1| Fe-S oxidoreductase [Congregibacter litoralis KT71]
 gi|88699656|gb|EAQ96767.1| Fe-S oxidoreductase [Congregibacter litoralis KT71]
          Length = 466

 Score =  170 bits (430), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 135/420 (32%), Positives = 192/420 (45%), Gaps = 49/420 (11%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC   + DS R+       GY  V S  DA+L+V+NTC   + A E+  + +G     
Sbjct: 38  SLGCPKALVDSERILSQLKLDGYNIVGSYTDAELVVVNTCGFIDSAKEESLAAIGEA--- 94

Query: 91  KNSRIKEGGDLLVVVAGCVAQ-AEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149
               I E G   V+V GC+ + A+ E I    P V  V GP  Y  +   +         
Sbjct: 95  ----IAENG--RVIVTGCMGKGADAERIRAEHPKVLSVTGPAAYEEVVSAVH-------- 140

Query: 150 VDTDY----SVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
              DY      +D F  L          R   A+L I EGC+  C+FC++P  RG  +SR
Sbjct: 141 ---DYVPAPPPKDAFTDLIPASTVRLTPRHY-AYLKISEGCNHRCSFCIIPSMRGDLVSR 196

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYSL 254
            +  V+DEA  L+ +GV E+ ++ Q+ +A           W+G+ L         L  +L
Sbjct: 197 PIGDVMDEAEALVRSGVRELLVISQDTSAYGVDLKYRTGFWQGRPL---STRMESLCKAL 253

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
            E+   VRL Y   +P       + A G +   +PYL +P Q  S  +LK M R     +
Sbjct: 254 GELGVWVRLHYVYPYPHVDKIIPLMAEGKI---LPYLDIPFQHASHAVLKRMRRPAATEK 310

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
               I   RS  PDI + S FIVGFPGETD +F   +D +D+    +   FKYSP  G  
Sbjct: 311 VLHRIHNWRSQCPDITLRSTFIVGFPGETDAEFEELLDFLDEAQLDRVGCFKYSPVTGAA 370

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFN--DACVGQIIEVLIEKHGKEKGKLVGRS 432
            + + + V E +K ER       LR+Q +S       VG+ IEVLI+    +    VGRS
Sbjct: 371 ANELADHVPEALKEERYERFM--LRQQAISARRLQEKVGREIEVLIDN--VDADGAVGRS 426


>gi|315497159|ref|YP_004085963.1| miab-like tRNA modifying enzyme ylig [Asticcacaulis excentricus CB
           48]
 gi|315415171|gb|ADU11812.1| MiaB-like tRNA modifying enzyme YliG [Asticcacaulis excentricus CB
           48]
          Length = 470

 Score =  170 bits (430), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 140/467 (29%), Positives = 216/467 (46%), Gaps = 55/467 (11%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
            P+  FV S GC   + DS R+      +GY        AD++V+NTC   + A ++  +
Sbjct: 10  APKVGFV-SLGCPKALVDSERILTRLKGEGYATAAEYAGADVVVVNTCGFLDSARDESLN 68

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +G         + E G   VVV GC+  AE + I  R P V  V G   Y    E++E 
Sbjct: 69  AIGEA-------LAENGK--VVVTGCLG-AEADLIRERFPNVAAVTGAHQYE---EVMEA 115

Query: 143 ARFGKRVVDTDYSVEDKFERL-SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
            R   R+V       D F  L    D G        A+L I EGCD  C+FC++P  RG 
Sbjct: 116 VR---RIVPAK---PDPFRPLVPENDPGVRLTPKHYAYLKISEGCDHRCSFCIIPSLRGD 169

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDL 250
             SR + +V+ EA  L  NGV E+ ++ Q+ +A           WR    D  K +F DL
Sbjct: 170 LASRPVDEVLREAEVLAANGVKELLVVSQDTSAYGLDIRYAEGRWRN---DYYKASFEDL 226

Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
              L E+   VR+ Y   +P   S   + A G    ++PYL +P Q  S ++LK+M R  
Sbjct: 227 SRGLGELGIWVRMHYVYPYPHVNSVIPLMAEGK---ILPYLDIPFQHASPKVLKAMRRPG 283

Query: 311 TAYEYRQIIDRIRSVR---PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
                 + +DRI S R   PD+ + S F+VGFPGET+ DF   +D ++     +  +F Y
Sbjct: 284 NQ---DKTLDRILSWREICPDLTLRSTFVVGFPGETEADFNLLLDWLEAAQIDRVGAFAY 340

Query: 368 SPRLGTPGSNMLEQVDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEK---H 421
               G    ++ + V E VK +RL   + +  ++  Q++      VGQ+++VL+++    
Sbjct: 341 ENVEGAAARDLPDHVPEEVKQDRLARFMAVASRISAQKLQNK---VGQVVDVLVDEIRSD 397

Query: 422 GKEKGKLVGRSPWLQSVVL--NSKNHNIGDIIKVRITDVKISTLYGE 466
           G    +  G +P +   +        + GD  K ++T      L+GE
Sbjct: 398 GVAVARTKGDAPEIDGHIYLKGFTGLSAGDYAKAKVTRADAYDLWGE 444


>gi|254372338|ref|ZP_04987829.1| hypothetical protein FTCG_01405 [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|151570067|gb|EDN35721.1| hypothetical protein FTCG_01405 [Francisella novicida GA99-3549]
          Length = 439

 Score =  170 bits (430), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 130/457 (28%), Positives = 215/457 (47%), Gaps = 52/457 (11%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           +P+  FV S GC  N+ DS R+     ++GY+ V+S D+AD++++NTC     A ++   
Sbjct: 4   IPKIGFV-SLGCPKNLVDSERIITKLKAEGYDLVDSYDNADMVIVNTCGFLNSAIDESLE 62

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +G         I E G +LV   GC+   + + I  + P V  + GPQ Y  L   +E 
Sbjct: 63  VIGE-------AIAENGKVLV--TGCLGN-KADLIKEKHPEVLSITGPQDYENL---IEA 109

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
                 +   D+      + + +    Y       ++L I EGC+  CTFC++P  RG  
Sbjct: 110 VHTHAPIFANDFVSLVPPQGIKLTPRHY-------SYLKISEGCNNTCTFCIIPDIRGKL 162

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLL 251
            SRS+  ++ EA KL + GV E+ ++ Q+ +A           W  K     +    DL 
Sbjct: 163 KSRSIDNIMKEAEKLKNAGVKELLVISQDTSAYGVDIKYKSGIWNNKEY---QSNIIDLA 219

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
            +L ++    RL Y   +P       + A G +   +PYL +P+Q  S  +LK M R   
Sbjct: 220 TALGDLDMWTRLHYVYPYPHVDKIVPLMAQGKI---LPYLDVPLQHSSPEVLKRMKRPAH 276

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
             +    I++ R + PDI I S FIVGFPGET+ DF   +D  +K    +   FKYS   
Sbjct: 277 TQKTLDRINKWRDICPDITIRSTFIVGFPGETEADFEHLLDFAEKAQLDRVGCFKYSEVE 336

Query: 372 GTPGSNMLEQVDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL 428
           G   +     + E VK +RL   + LQ ++   ++      VG   +V+I+   K++   
Sbjct: 337 GAKANQFDNLISEEVKQQRLDEFMGLQAQISADKLQ---RFVGTEQQVIIDVINKDENYA 393

Query: 429 VGRSPWL------QSVVLNS--KNHNIGDIIKVRITD 457
           +GR+ +       Q ++ ++  +N  +G+   V IT+
Sbjct: 394 IGRTKYDAPEVDGQVIIGDALERNLKVGEFATVEITE 430


>gi|219854681|ref|YP_002471803.1| hypothetical protein CKR_1338 [Clostridium kluyveri NBRC 12016]
 gi|219568405|dbj|BAH06389.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 451

 Score =  170 bits (430), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 133/439 (30%), Positives = 219/439 (49%), Gaps = 30/439 (6%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N  DS  +     S  YE V     AD I++NTC   E A ++    +  +   
Sbjct: 15  SLGCDKNRVDSEIILGNVKS-AYEIVTDPKLADFIIINTCGFIESAKQESIDTILEMSQY 73

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
           K      G    +VV GC+AQ  G E++   P +++++G   Y +L E          + 
Sbjct: 74  KGKYNCRG----IVVTGCLAQRYGIELMELLPEIDIMLGVNDYDKLVE-----NINNFIS 124

Query: 151 DTDYSVED-KFERLSIVDGG-YNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           D    + +  +  L+I +G      +  TA+L I EGCD +CT+C++P  RG   SRS+ 
Sbjct: 125 DKQNKIHNCGYSDLNINEGKRILTTKSHTAYLRIAEGCDNYCTYCIIPKIRGKYRSRSIE 184

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYTT 267
            ++ E  +L   GV E+ L+ Q+   +   G+D   K    +L+ S+S+I+G+  +R   
Sbjct: 185 NILQECNELSLRGVKEVILIAQDTTRY---GIDLYNKKMLPELMRSISKIEGIEWIRLLY 241

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
            +P ++++ +I      D +  Y+ +P+Q  SD ILK M RR    +  + I+ +R    
Sbjct: 242 CYPEEITEDIIDEIALNDKVCNYIDIPLQHISDNILKLMGRRGRKKDILRNINELRKKIN 301

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
           DI+I +  IVGFPGE+++DF+   + ++ I +     FKYS   GT    M +QV E +K
Sbjct: 302 DISIRTTIIVGFPGESEEDFKELKNFIENIKFDNLGVFKYSREEGTRAYKMKDQVSEELK 361

Query: 388 AER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVVL 440
             R   L+ LQK +     S     +G   +VL+E  GK++G   GR    +P +  V+ 
Sbjct: 362 TAREGELMMLQKHI---IYSMQKYKIGNKYKVLVE--GKKEGVWYGRNYAMAPDIDGVIY 416

Query: 441 --NSKNHNIGDIIKVRITD 457
             + K   +G +I V+IT+
Sbjct: 417 IKSKKELKVGTMIDVKITN 435


>gi|208780420|ref|ZP_03247761.1| conserved hypothetical protein [Francisella novicida FTG]
 gi|208743788|gb|EDZ90091.1| conserved hypothetical protein [Francisella novicida FTG]
          Length = 445

 Score =  170 bits (430), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 130/457 (28%), Positives = 215/457 (47%), Gaps = 52/457 (11%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           +P+  FV S GC  N+ DS R+     ++GY+ V+S D+AD++++NTC     A ++   
Sbjct: 10  IPKIGFV-SLGCPKNLVDSERIITKLKAEGYDLVDSYDNADMVIVNTCGFLNSAIDESLE 68

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +G         I E G +LV   GC+   + + I  + P V  + GPQ Y  L   +E 
Sbjct: 69  VIGE-------AIAENGKVLV--TGCLGN-KADLIKEKHPEVLSITGPQDYENL---IEA 115

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
                 +   D+      + + +    Y       ++L I EGC+  CTFC++P  RG  
Sbjct: 116 VHTHAPIFANDFVSLVPPQGIKLTPRHY-------SYLKISEGCNNTCTFCIIPDIRGKL 168

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLL 251
            SRS+  ++ EA KL + GV E+ ++ Q+ +A           W  K     +    DL 
Sbjct: 169 KSRSIDNIMKEAEKLKNAGVKELLVISQDTSAYGVDIKYKSGIWNNKEY---QSNIIDLA 225

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
            +L ++    RL Y   +P       + A G +   +PYL +P+Q  S  +LK M R   
Sbjct: 226 TALGDLDMWTRLHYVYPYPHVDKIVPLMAQGKI---LPYLDVPLQHSSPEVLKRMKRPAH 282

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
             +    I++ R + PDI I S FIVGFPGET+ DF   +D  +K    +   FKYS   
Sbjct: 283 TQKTLDRINKWRDICPDITIRSTFIVGFPGETEADFEHLLDFAEKAQLDRVGCFKYSEVE 342

Query: 372 GTPGSNMLEQVDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL 428
           G   +     + E VK +RL   + LQ ++   ++      VG   +V+I+   K++   
Sbjct: 343 GAKANQFDNLISEEVKQQRLDEFMGLQAQISADKLQ---RFVGTEQQVIIDVINKDENYA 399

Query: 429 VGRSPW------LQSVVLNS--KNHNIGDIIKVRITD 457
           +GR+ +       Q ++ ++  +N  +G+   V IT+
Sbjct: 400 IGRTKYDAPEVDGQVIIGDALERNLKVGEFATVEITE 436


>gi|330959246|gb|EGH59506.1| ribosomal protein S12 methylthiotransferase [Pseudomonas syringae
           pv. maculicola str. ES4326]
          Length = 447

 Score =  169 bits (429), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 146/474 (30%), Positives = 235/474 (49%), Gaps = 65/474 (13%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  FV S GC   + DS R+      +GYE V + +DAD++V+NTC   + A  +    
Sbjct: 10  PKVGFV-SLGCPKALVDSERILTQLRMEGYEVVATYEDADVVVVNTCGFIDTAKAESLEV 68

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G         IKE G   V+V GC+   +   I    P V  V GPQ Y          
Sbjct: 69  IGE-------AIKENGK--VIVTGCMG-VDASVIRNVHPSVLSVTGPQQY---------- 108

Query: 144 RFGKRVVDTDYSV-EDKFERLSIVD----GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
              ++VV+  + V   + +   ++D     G        A+L I EGC+  C+FC++P  
Sbjct: 109 ---EQVVNAVHDVVPPRHDHNPLIDLVPPQGIKLTPRHYAYLKISEGCNHSCSFCIIPSM 165

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA------WRGKGLDGE--KCTFSDL 250
           RG  +SR +  V+DEA++L+ +GV E+ ++ Q+ +A      +R    DG+  K   ++L
Sbjct: 166 RGKLVSRPVGDVLDEAKRLVKSGVKELLVISQDTSAYGVDVKYRTGFWDGQPIKTRMTEL 225

Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
             +L  +   VRL Y   +P       + A G    ++PYL +P Q  S +ILK M R  
Sbjct: 226 CQALGSMGVWVRLHYVYPYPHVDELIPLMAAGK---ILPYLDIPFQHASPKILKLMKR-- 280

Query: 311 TAYEYRQIIDRIRSVR---PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
            A+E + +  RI++ R   PD+ I S FIVGFPGET++DF+  +D + +    +   F+Y
Sbjct: 281 PAFEDKTLA-RIKNWREQCPDLIIRSTFIVGFPGETEEDFQYLLDWLTEAQLDRVGCFQY 339

Query: 368 SPRLGTPGSNMLEQ--VDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422
           SP  G P +N+L+   V ++VK    +R +  Q+ +   ++      +G+ IEVLI++  
Sbjct: 340 SPVEGAP-ANLLDAAIVPDDVKQDRWDRFMAHQQAISAARLQMK---IGKEIEVLIDEV- 394

Query: 423 KEKGKLVGR----SPWLQSVVL----NSKNHNIGDIIKVRITDVKISTLYGELV 468
            E+G  VGR    +P +   V     +      GD I  R+TD     L+ E++
Sbjct: 395 DERGA-VGRCFFDAPEIDGNVFIGLEDGSTVQPGDKIMCRVTDADEYDLWAEVL 447


>gi|256819862|ref|YP_003141141.1| MiaB-like tRNA modifying enzyme YliG [Capnocytophaga ochracea DSM
           7271]
 gi|256581445|gb|ACU92580.1| MiaB-like tRNA modifying enzyme YliG [Capnocytophaga ochracea DSM
           7271]
          Length = 433

 Score =  169 bits (429), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 132/448 (29%), Positives = 215/448 (47%), Gaps = 39/448 (8%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC-HIREKAAEKVYSFLGRI 87
           V + GC  NVYDS  +     + G E V+     +++V+NTC  I     E + + L  +
Sbjct: 13  VVTLGCSKNVYDSEVLMGQLKAGGKEVVHEQK-GNIVVINTCGFINNAKEESINTILDYV 71

Query: 88  RNLKNSRIKEGGDL-LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           +       KE G +  V V GC+++    ++ +  P V+   G      LP LL      
Sbjct: 72  QQ------KEAGLVDKVFVMGCLSERYKPDLEKEIPDVDQYFGTS---ELPALL------ 116

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
            +V+  DY  E   ERL+     Y       A+L I EGCD+ C+FC +P  RG  +S  
Sbjct: 117 -KVLGADYKHELIGERLTTTPKNY-------AYLKISEGCDRPCSFCAIPLMRGAHLSTP 168

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRY 265
           +  +V EA KL   GV E+ L+ Q++  +   GLD  +K   +DLL +L +++G+  +R 
Sbjct: 169 IEALVTEAEKLAAKGVKELILIAQDITYY---GLDLYKKRALADLLRALVKVEGIEWIRI 225

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
             + P      +++       +  YL +P+Q  SD IL SM R  T  +  +++ + R  
Sbjct: 226 HYAFPTGFPMDVLEVMKTEPKICNYLDIPLQHISDSILASMKRGTTQAKTTKLLKKFREA 285

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P++AI +  IVG+PGET++DF+   D V ++ + +   F YS    T    + + V E 
Sbjct: 286 IPEMAIRTTLIVGYPGETEEDFQKLKDFVKEMRFDRLGCFTYSHEENTTAYALEDDVPEE 345

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPW-----LQSVVL 440
           VK  R   + +   +     N   VG+    LI++  KE    VGR+ +        V++
Sbjct: 346 VKLARANEIMEIQSQISWELNQEKVGKTFRCLIDR--KEGNYFVGRTEYDSPDVDNEVLI 403

Query: 441 NSKNH--NIGDIIKVRITDVKISTLYGE 466
           ++K H   IGD   ++I +     LYGE
Sbjct: 404 DAKKHYVKIGDFTDIKIIEATDYDLYGE 431


>gi|78066551|ref|YP_369320.1| putative 2-methylthioadenine synthetase [Burkholderia sp. 383]
 gi|123756160|sp|Q39FU0|RIMO_BURS3 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|77967296|gb|ABB08676.1| SSU ribosomal protein S12P methylthiotransferase [Burkholderia sp.
           383]
          Length = 453

 Score =  169 bits (429), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 133/477 (27%), Positives = 219/477 (45%), Gaps = 61/477 (12%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  FV S GC   + DS ++     ++GYE   + D ADL+V+NTC   ++A ++    
Sbjct: 5   PKVGFV-SLGCPKALVDSEQIITQLRAEGYEISGTYDGADLVVVNTCGFIDEAVQESLDA 63

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCV---AQAEGEEILRR-SPIVNVVVGPQTYYRLPEL 139
           +G         + E G   V+V GC+   + A G  ++    P V  V GP     + + 
Sbjct: 64  IGEA-------LTENGK--VIVTGCLGAKSSASGSNLIEEVHPKVLAVTGPHAVGEVMQA 114

Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           +  +   K          D F  L +   G        A+L I EGC+  CTFC++P  R
Sbjct: 115 V-HSHLPKP--------HDPFTDL-VPAAGIKLTPRHYAYLKISEGCNHRCTFCIIPSMR 164

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFS 248
           G  +SR +++V+ EA  L  +GV E+ ++ Q+ +A           W GK +   K   +
Sbjct: 165 GDLVSRPVAEVMLEAENLFKSGVKELLVISQDTSAYGVDVKYRTGFWNGKPI---KTRMT 221

Query: 249 DLLYSLSEIKG----LVRLRYTTSHPRD------MSDCLIKAHGDLDVLMPYLHLPVQSG 298
           DL+ +L E+       VRL Y   +P        M++   K H     ++PYL +P Q  
Sbjct: 222 DLVAALGELAAQYGAWVRLHYVYPYPSVDEVIPLMAEGPFKGH-----VLPYLDVPFQHA 276

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
              +LK M R   A +  + + + R + PD+ I S FI GFPGET++ F   +D + +  
Sbjct: 277 HPEVLKRMKRPANAEKVLERVQKWREICPDLTIRSTFIAGFPGETEEQFETLLDFIREAE 336

Query: 359 YAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI 418
             +   F YSP  G   + +   + ++V+ ER     +   E   +     VG+ ++VLI
Sbjct: 337 LDRVGCFAYSPVEGATANELDGALPDDVREERRARFMEVAEEVSANRIQRKVGKTLKVLI 396

Query: 419 EKHGKEK--GKLVGRSPWLQSVVL------NSKNHNIGDIIKVRITDVKISTLYGEL 467
           ++   E   G+    +P +  VV        SK + +GD + V+IT      L+GE+
Sbjct: 397 DEVSAEGGIGRTAADAPEIDGVVYVEPAAKASKRYKVGDFVSVKITGADGHDLWGEV 453


>gi|29840033|ref|NP_829139.1| MiaB-like tRNA modifying enzyme [Chlamydophila caviae GPIC]
 gi|29834380|gb|AAP05017.1| MiaB-like tRNA modifying enzyme [Chlamydophila caviae GPIC]
          Length = 421

 Score =  169 bits (429), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 124/448 (27%), Positives = 218/448 (48%), Gaps = 54/448 (12%)

Query: 33  GCQMNVYDSLRMEDMFFSQGYERVNSMDD-ADLIVLNTCHIREKAAEKVYSFLGRIRNLK 91
           GC++N Y+     D     GY  +   ++  DL ++NTC +   A           R+  
Sbjct: 16  GCRVNQYEIQSYRDQLNFLGYREITDPEEPCDLCIVNTCAVTGSAESSG-------RHAV 68

Query: 92  NSRIKEGGDLLVVVAGCVAQAEGE---EILRRSPIVNVVVGPQTYYRL-PELLERARFGK 147
               ++  D  +V+ GC+ +A+ E    + R+  +V+     Q   ++ P + +   F  
Sbjct: 69  RQVCRQNPDAFLVITGCLGEADKEFFNSLERQCLLVSNKEKHQLMEKIFPSIQDLPEFRI 128

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
           R           FE       G +R     AF+ +Q+GC+ FC++C++PY RG   SR +
Sbjct: 129 R----------SFE-------GKSR-----AFIKVQDGCNSFCSYCIIPYLRGRSRSRPI 166

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
            +++DE   L+  G  E+ + G NV  ++ +G      + + L+  + EIKG+ R+R ++
Sbjct: 167 QEILDEISGLVSQGYQEVVIAGINVGDYQDEGK-----SLAHLIRQVDEIKGIERIRISS 221

Query: 268 SHPRDMSDCLIKAHGDLDVLMP------YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
             P D+ + L       DVL+         HL +QSGS+ ILK MNR+++  ++   +D 
Sbjct: 222 IDPEDVQEDL------RDVLLSGRHTCHSSHLVLQSGSNAILKRMNRKYSRSDFLDCVDA 275

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +RSV P  A ++D IVGFPGETD DF  T+ +++ +G+ +   F +SPR  T       Q
Sbjct: 276 LRSVDPRYAFTTDVIVGFPGETDQDFEDTLRIIEDVGFIKVHIFPFSPRERTKAYTFASQ 335

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           + ++V  ER   L    +E         +G+ + VL+E+   ++G   G SP+   V   
Sbjct: 336 LPQSVINERKKHLAHVAKEIARREMAQRIGETVSVLVER--IDQGIAYGHSPYFDMVGFP 393

Query: 442 SKNH-NIGDIIKVRITDVKISTLYGELV 468
           + +   +  ++ V I  V+  TL G+ +
Sbjct: 394 ADSTVAVNTLVNVYIDAVEEDTLKGKRI 421


>gi|329942876|ref|ZP_08291655.1| RNA modification enzyme, MiaB family protein [Chlamydophila
           psittaci Cal10]
 gi|332287469|ref|YP_004422370.1| MiaB-like tRNA modification enzyme [Chlamydophila psittaci 6BC]
 gi|313848048|emb|CBY17046.1| conserved hypothetical protein [Chlamydophila psittaci RD1]
 gi|325506835|gb|ADZ18473.1| MiaB-like tRNA modification enzyme [Chlamydophila psittaci 6BC]
 gi|328815136|gb|EGF85125.1| RNA modification enzyme, MiaB family protein [Chlamydophila
           psittaci Cal10]
 gi|328914717|gb|AEB55550.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Chlamydophila
           psittaci 6BC]
          Length = 460

 Score =  169 bits (429), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 116/391 (29%), Positives = 191/391 (48%), Gaps = 17/391 (4%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ DS  M  +    GYE    + +AD ++LNTC   + A ++   +L RI + 
Sbjct: 22  SLGCSRNLVDSEVMLGILLKAGYEATELLQEADYLILNTCGFLKAARDESTDYLQRIIDK 81

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
           K    K      +++ GC+     EE+    P V+ V+G      +   +E    G+++ 
Sbjct: 82  KKETAK------IILTGCMVSKHKEELKPWLPYVHYVLGSGDVEHILSAIESKESGEKLS 135

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
              Y    +  R       Y       A+L I EGC K C FC++P  +G   S+ L QV
Sbjct: 136 SKSYLEMGEVPRKLSTPKHY-------AYLKIAEGCRKRCAFCIIPTIKGGLRSKPLEQV 188

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGL--DGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
           + E R L+  GV E+ L+ Q++  + GK L  D + C  S L   L E  G   +R    
Sbjct: 189 IKEFRLLLKMGVKEVILIAQDLGDY-GKDLSKDRKSCLHSVLREMLKE-PGDYWIRMLYL 246

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
           +P ++ D +I        L+PY+ +P+Q  ++RILK M R  +  +   ++ ++R+  P 
Sbjct: 247 YPDEVDDTIIDLMEKDRRLLPYVDIPLQHINNRILKKMLRTTSREQILDLLTKLRTRIPH 306

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           + I S  IVGFPGETD++F+  +D V +        F YS   G+  + M  Q+ ++VK+
Sbjct: 307 VYIRSSLIVGFPGETDEEFQELVDFVGEGWIDNLGIFSYSQEKGSLAAEMPYQIPQSVKS 366

Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419
           +RL  L +  ++     N   VG+ +E +I+
Sbjct: 367 KRLKILSQTQKKNVEKHNKQFVGKTVEAVID 397


>gi|328676442|gb|AEB27312.1| Ribosomal protein S12p Asp88 methylthiotransferase [Francisella cf.
           novicida Fx1]
          Length = 435

 Score =  169 bits (429), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 128/450 (28%), Positives = 215/450 (47%), Gaps = 42/450 (9%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           +P+  FV S GC  N+ DS R+     ++GY+ V+S D+AD++++NTC     A ++   
Sbjct: 4   IPKIGFV-SLGCPKNLVDSERIITKLKAEGYDLVDSYDNADMVIVNTCGFLNSAIDESLD 62

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +G         I E G +LV   GC+   + + I  + P V  + GPQ Y  L   +E 
Sbjct: 63  VIGE-------AIAENGKVLV--TGCLGN-KADLIKEKHPEVLSITGPQDYENL---IEA 109

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
                 +   D+      + + +    Y       ++L I EGC+  CTFC++P  RG  
Sbjct: 110 VHTHAPIFANDFVSLVPPQGIKLTPRHY-------SYLKISEGCNNTCTFCIIPDIRGKL 162

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW----RGKGLDGEKCTFSDLLYSLSEIK 258
            SRS+  ++ EA KL   GV E+ ++ Q+ +A+    + K     +    DL  +L ++ 
Sbjct: 163 KSRSIDNIMKEAEKLKKAGVKELLVISQDTSAYGVDIKYKSNKEYQSNIIDLATALGDLD 222

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
              RL Y   +P       + A G +   +PYL +P+Q  S  +LK M R     +    
Sbjct: 223 MWTRLHYVYPYPHVDKIVPLMAQGKI---LPYLDVPLQHSSPEVLKRMKRPAHTQKTLDR 279

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           I++ R + PDI I S FIVGFPGET+ DF   +D  +K    +   FKYS   G   +  
Sbjct: 280 INKWRDICPDITIRSTFIVGFPGETEADFEHLLDFAEKAQLDRVGCFKYSEVEGAKANQF 339

Query: 379 LEQVDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWL 435
              + E +K +RL   + LQ ++   ++      VG   +V+I+   K++   +GR+ + 
Sbjct: 340 DNLISEEIKQQRLDEFMGLQAQISADKLQ---RFVGTEQQVIIDVINKDENYAIGRTKYD 396

Query: 436 ------QSVVLNS--KNHNIGDIIKVRITD 457
                 Q ++ ++  +N  +G+   V IT+
Sbjct: 397 APEVDGQVIIGDALERNLKVGEFATVEITE 426


>gi|149912565|ref|ZP_01901099.1| MiaB-like tRNA modifying enzyme [Roseobacter sp. AzwK-3b]
 gi|149812971|gb|EDM72797.1| MiaB-like tRNA modifying enzyme [Roseobacter sp. AzwK-3b]
          Length = 419

 Score =  169 bits (429), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 126/444 (28%), Positives = 206/444 (46%), Gaps = 55/444 (12%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  M+++    G E        + +++NTC +  +A  K    + R+R  
Sbjct: 9   TLGCRLNAYETEAMKELSQQAGLE--------NAVIVNTCAVTAEAVRKARQEIRRLR-- 58

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG------PQTYYRLPELLERAR 144
                +E     ++V GC AQ E  E     P V+ V+G      P T+  L      A 
Sbjct: 59  -----RENPTARLIVTGCAAQTE-PETFTAMPEVDAVIGNTEKMQPSTWAGLA-----AD 107

Query: 145 FGKRV----VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           F        VD   SV +    L  +DG   R R   A++ +Q GCD  CTFC++P+ RG
Sbjct: 108 FIGETEACQVDDIMSVTETAGHL--IDGFGTRSR---AYVQVQNGCDHRCTFCIIPFGRG 162

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
              S     VVD+ ++L+D G  E+ L G ++ +W G  L  E      ++  L  +  L
Sbjct: 163 NSRSVPAGVVVDQIKRLVDRGFNEVVLTGVDLTSW-GADLPAEPRLGDLVMRILKLVPDL 221

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            RLR ++    ++ D L++A      LMP+LHL +Q G D ILK M RRH   +  + ++
Sbjct: 222 PRLRISSIDSIEVDDNLMQAIATEKRLMPHLHLSLQHGDDLILKRMKRRHLRDDAIRFVE 281

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
             R +RP++   +D I GFP ET+  F  ++ LV++        F YSPR GTP + M  
Sbjct: 282 EARGLRPEMTFGADIIAGFPTETEAAFANSLKLVEECDLTWLHVFPYSPRPGTPAARM-P 340

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-----KGKLVGRSPWL 435
           QV+            + ++E+      A   Q+   L E+ G+      +   +GR+   
Sbjct: 341 QVN-----------GRDIKERAARLRAAGERQVTRHLAEQQGRTHYILMESARMGRTEQF 389

Query: 436 QSVVLNSKNHNIGDIIKVRITDVK 459
             V  ++ + + G I+   I   +
Sbjct: 390 TEVTFDA-DQSEGHIVTATIAGTR 412


>gi|171472297|gb|ACB46852.1| MiaB [Pseudomonas stutzeri]
          Length = 440

 Score =  169 bits (429), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 139/469 (29%), Positives = 222/469 (47%), Gaps = 57/469 (12%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P   FV S GC     DS R+     ++GY+ V +  DAD++V+NTC   + A  +    
Sbjct: 5   PTVGFV-SLGCPKATVDSERILTQLRTEGYQIVPTYQDADVVVVNTCGFIDSAKAESLDA 63

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G         I E G   V+V GC+  AE + I    P V  V GPQ Y          
Sbjct: 64  IGE-------AIAENGK--VIVTGCMGVAE-DNIRNVHPSVLAVTGPQQY---------- 103

Query: 144 RFGKRVVDTDYSV------EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197
              ++VV+  + V       D F  L    G     R   A+L I EGC+  C+FC++P 
Sbjct: 104 ---EQVVNAVHEVVPPNIDHDPFLDLVPPQGIKLTPRHY-AYLKISEGCNHSCSFCIIPS 159

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCT 246
            RG  +SR +  V+ EA +L+  GV EI ++ Q+ +A           W G+ +   K  
Sbjct: 160 MRGKLVSRPVGDVLSEAERLVKAGVKEILVISQDTSAYGVDVKYKTDFWNGQPV---KTR 216

Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306
             +L  +LS +   VRL Y   +P       + A G    L+PYL +P Q  S ++LK+M
Sbjct: 217 MLELCQALSSMGVWVRLHYVYPYPNVDDVIPLMAAGK---LLPYLDIPFQHASPKVLKAM 273

Query: 307 NRRHTAYEYRQI--IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
            R   A+E + +  I + R + P++ I S FIVGF GET++DF+  +D + +    +   
Sbjct: 274 KR--PAFEDKTLARIKQWREICPELTIRSTFIVGFLGETEEDFQYLLDWLTEAQLDRVGC 331

Query: 365 FKYSPRLGTPGSNM-LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK 423
           F+YSP  G P   + LE V + +K +R        +    +  +  +GQ +EVLI++  +
Sbjct: 332 FQYSPVEGAPAEELGLEPVPDEIKQDRWDRFMAHQQAISAARLERKIGQELEVLIDEVDE 391

Query: 424 EK--GKLVGRSPWLQSVVL--NSKNHNIGDIIKVRITDVKISTLYGELV 468
           +   G+    +P +  +V   + +    GD ++VR+T      L+ E +
Sbjct: 392 DGAIGRSCADAPEIDGLVYIDSEQPLQAGDKVRVRVTHSDEYDLWAEAI 440


>gi|325294065|ref|YP_004279929.1| methylase protein [Agrobacterium sp. H13-3]
 gi|325061918|gb|ADY65609.1| putative methylase protein [Agrobacterium sp. H13-3]
          Length = 424

 Score =  169 bits (429), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 117/400 (29%), Positives = 187/400 (46%), Gaps = 30/400 (7%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V ++GC++N Y+S  M       G          + +++NTC +  +A  +         
Sbjct: 6   VITFGCRLNTYESEVMRAEAEKAGLN--------NAVLVNTCAVTGEAVRQARQ------ 51

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ------TYYRLPELLER 142
                  ++     ++V GC AQ E ++     P V+ V+G +      +Y  LP+    
Sbjct: 52  -AIRRARRDNPHARIIVTGCAAQTE-KQTFAEMPEVDAVLGNEEKLKSASYRALPDFGVS 109

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           A    RV D         + +  +DG       V AF+ +Q GCD  CTFC++PY RG  
Sbjct: 110 AEEKLRVNDIMSIKATAPQMVKHIDGH------VRAFIQVQNGCDHRCTFCIIPYGRGNS 163

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            S  +  VV++AR+L+++G CEI L G +  ++ G  L GE          L ++  ++R
Sbjct: 164 RSVPMGAVVEQARRLVESGYCEIVLTGVDATSY-GADLPGEPSLGLLAKTLLKQVPEILR 222

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LR ++    +    L+         MP+LHL +Q G D ILK M RRH   +  +    +
Sbjct: 223 LRLSSIDSIEADHHLMDLIAGEARFMPHLHLSLQHGDDMILKRMKRRHLRADAIRFCHEV 282

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           RS+RPDIA  +D I GFP E ++ F     L ++ G +    F YSPR GTP + M  Q+
Sbjct: 283 RSLRPDIAFGADMIAGFPTENEEMFENAATLAEECGISSLHVFPYSPRAGTPAARM-PQL 341

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422
           D  +  ER   L+++    ++      VG    +L+E  G
Sbjct: 342 DRALVKERAARLRERGEALRLVHLQNMVGSTQTILVENTG 381


>gi|317154020|ref|YP_004122068.1| RNA modification enzyme, MiaB family [Desulfovibrio aespoeensis
           Aspo-2]
 gi|316944271|gb|ADU63322.1| RNA modification enzyme, MiaB family [Desulfovibrio aespoeensis
           Aspo-2]
          Length = 447

 Score =  169 bits (429), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 120/413 (29%), Positives = 196/413 (47%), Gaps = 45/413 (10%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYE-RVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           RF+  + GC++N Y++  + + +   G      +  +ADLI++N+C +    A  V    
Sbjct: 3   RFYTATLGCKINQYETRSIAEAWTGHGQAFETGAPQEADLILINSCAV---TANAVADLR 59

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVV---------VGPQTYYR 135
             +R+L  +    G    ++V GC AQ   +E+     +V VV          GP     
Sbjct: 60  QTVRSLHRASPTAG----IIVTGCAAQVMADELAGLPGVVRVVPQADKGALLAGPAAPPV 115

Query: 136 LPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
            P +L          D +      F   SI   GY+R R V   + +Q+GC   CT+C+V
Sbjct: 116 SPAVL----------DGEAGALGGFAPFSIT--GYSRARAV---VKVQDGCSHHCTYCIV 160

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL- 254
           P TRG  +SR +  VV EA +L+D+G  E+ + G N+  + G+GL  ++  F DLL  L 
Sbjct: 161 PQTRGPSVSRPVDAVVAEAVRLLDSGFRELVISGINLRHY-GRGLQ-DRTDFWDLLARLD 218

Query: 255 ----SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
                   G  RLR ++  P  +    +       ++ P LHL +QSG   +L++M R H
Sbjct: 219 RELAPRWAGRARLRVSSVEPGQLDHKALDTLAGSSMVCPQLHLSLQSGDPDVLRAMGRGH 278

Query: 311 TAYEYRQIID---RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
             Y+ +  +D   R+    P I + +D I GFPGE +  F  T+ L   +    A  F Y
Sbjct: 279 --YDPQGAVDFLIRLGEAWPVIGLGADLITGFPGEDEAGFENTLTLCRVLPLTYAHVFPY 336

Query: 368 SPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQ-IIEVLIE 419
           S R GT  + M  QV   V+ ER   L+  +  ++ +F +  +G+  ++VL++
Sbjct: 337 SERPGTAAATMAGQVAVPVRKERATRLRALVSRRKRAFGERLLGRPCLDVLVQ 389


>gi|149926143|ref|ZP_01914405.1| hypothetical protein LMED105_01383 [Limnobacter sp. MED105]
 gi|149824961|gb|EDM84173.1| hypothetical protein LMED105_01383 [Limnobacter sp. MED105]
          Length = 453

 Score =  169 bits (429), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 142/473 (30%), Positives = 218/473 (46%), Gaps = 59/473 (12%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P   FV S GC   + DS R+      +GY    S + ADLIV+NTC   + A ++    
Sbjct: 12  PSVGFV-SLGCPKALVDSERILTQLKVEGYNVSASYEGADLIVVNTCGFIDSAVQESLDA 70

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEE----ILRRSPIVNVVVGPQTYYRLPEL 139
           +G   +             V+V GC+    G E    I +  P V  V GP       E+
Sbjct: 71  IGEAMHANGK---------VIVTGCLGAKNGNEGKDMITKLHPKVLAVTGPHATE---EV 118

Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           ++                D F  L + D G        A+L I EGC+  CTFC++P  R
Sbjct: 119 MQAVHIHLP------KPHDPFIDL-VPDHGVKLTPKHYAYLKISEGCNHRCTFCIIPSMR 171

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLL 251
           G  +SR + +V+ EA  L   GV E+ ++ Q+ +A+      R   ++G   K  F  L 
Sbjct: 172 GDLVSRPIGEVIREAESLKKAGVKELLVVSQDTSAYGVDLKYRTDFVNGRPVKTQFQQLA 231

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
             L E+   VR+ Y   +P       + A G +   +PYL +P Q     +LK M R  +
Sbjct: 232 EELGELGIWVRMHYVYPYPHVDRVVPLMAEGKI---LPYLDIPFQHSHPDVLKRMKRPAS 288

Query: 312 AYEYRQIIDRIRSVR---PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
                + I+RIR+ R   PDI + S FI GFPGET+D+F+  +D +++    +   F YS
Sbjct: 289 G---ERNIERIRAWRETCPDITLRSTFITGFPGETEDEFKHLLDFIEEAQLDRVGVFAYS 345

Query: 369 PRLGTPGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK 425
           P  G   + +   V E VK E   RL+ LQ+K+    +S N+A +G++++VL+++  +E 
Sbjct: 346 PVDGAVANALDNPVPEEVKEERRARLMELQEKI---SLSRNEAKLGKVMQVLVDETDEE- 401

Query: 426 GKLVGRS----PWLQSVVL------NSKNHNIGDIIKVRITDVKISTLYGELV 468
             +V RS    P +   V        ++    GD I V I D     L+G +V
Sbjct: 402 -GIVARSKADAPEIDGNVFIPMPEDKARQPKPGDFINVLIDDCDEHDLWGRIV 453


>gi|294673381|ref|YP_003573997.1| MiaB family RNA modification enzyme [Prevotella ruminicola 23]
 gi|294472539|gb|ADE81928.1| RNA modification enzyme, MiaB family [Prevotella ruminicola 23]
          Length = 462

 Score =  169 bits (429), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 120/390 (30%), Positives = 192/390 (49%), Gaps = 15/390 (3%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N  ++     M    G       + AD+ ++NTC + E A +K    + R+   
Sbjct: 37  TLGCKLNFSETSTFGKMLQDLGVSTAQKGEQADICLINTCSVTEVADKKCRQAIHRL--- 93

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               ++E     VVV GC AQ E +E+ +    V++V+G      L + L  A  G    
Sbjct: 94  ----VRENPGAFVVVTGCYAQLEADEVAKIEG-VSLVLGSNEKANLVQFLSDAWTGAPTA 148

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
                     +  +      NR R    FL +Q+GCD FCT+C +PY RG   + +++ +
Sbjct: 149 KYYREKTKDIKSFAPSCSKGNRTR---YFLKVQDGCDYFCTYCTIPYARGFSRNPTIASL 205

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270
           V +A++    G  EI L G N+  + GK   GEK  F DL+ +L  ++G+ R R ++  P
Sbjct: 206 VAQAQEAAAEGGKEIVLTGVNIGDF-GK-TTGEK--FIDLVKALDGVEGIQRYRISSLEP 261

Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330
             +SD LI+        MP+ H+P+QSGS+ +LK M+R +    + + I RI+ + PD  
Sbjct: 262 DLISDELIEYCAKSRAFMPHFHIPLQSGSNTVLKLMHRHYDRELFAEKIHRIKELMPDAF 321

Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER 390
           I  D +VG  GET + F  T   +D +   Q   F YS R GT   ++   V E  K +R
Sbjct: 322 IGVDVMVGCRGETPECFEETYTFLDSLDVTQLHVFPYSERPGTSALSIPYVVPEKEKKQR 381

Query: 391 LLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
           +  L +   ++  +F +  +GQ  EVL EK
Sbjct: 382 VKRLLELSDQKTHAFYERYIGQQAEVLFEK 411


>gi|194882251|ref|XP_001975226.1| GG22199 [Drosophila erecta]
 gi|190658413|gb|EDV55626.1| GG22199 [Drosophila erecta]
          Length = 557

 Score =  169 bits (429), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 131/468 (27%), Positives = 226/468 (48%), Gaps = 47/468 (10%)

Query: 18  VDQCIVP--QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREK 75
           + + ++P  Q+ FVK++GC  N  DS  M     + GY R++  ++ADL +LN+C ++  
Sbjct: 63  IHESVIPGTQKVFVKTWGCAHNNSDSEYMAGQLAAYGY-RLSGKEEADLWLLNSCTVKNP 121

Query: 76  AAEKVYSFLGRIR-NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVN--VVVGPQT 132
           + +   +F   I+  ++N +        VVVAGCV Q        +S  +N   V+G Q 
Sbjct: 122 SED---TFRNEIKLGMRNGK-------HVVVAGCVPQGAP-----KSDYLNGLSVIGVQQ 166

Query: 133 YYRLPELLERARFGKRV--VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190
             R+ E++E    G  V  +     V  +    + +     RK  +   ++I  GC   C
Sbjct: 167 IDRVVEVVEETLKGNSVQLLQNKKKVHGRRVAGAPLSLPKVRKNQLIEIISINSGCLNQC 226

Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDL 250
           T+C   + RG   S    +VV+ AR+    G CEI L  ++  A+ G+ +     +  +L
Sbjct: 227 TYCKTKHARGDLASYPPEEVVERARQSFAEGCCEIWLTSEDTGAY-GRDIGS---SLPEL 282

Query: 251 LYSLSEI--------KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
           L+ L E+         G+    Y   H  +++  L         +  +LH+PVQSGSD +
Sbjct: 283 LWQLVEVIPEHCMLRVGMTNPPYILEHLEEVAKVLQHPR-----VYAFLHVPVQSGSDSV 337

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           L  M R +   ++  ++D +R   P + I++D I GFP ET+ DF  TM L  K  +   
Sbjct: 338 LGEMKREYCRQDFEHVVDFLRERVPGVTIATDIICGFPTETEADFEETMTLCAKYRFPSL 397

Query: 363 FSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDAC--VGQIIEVLIEK 420
           F  ++ PR GTP + M E++  N+  +R     K+L +   S+      VG+I  VL+ +
Sbjct: 398 FINQFFPRPGTPAAKM-ERIPANLVKKR----TKRLTDLFYSYEPYAKRVGEIYTVLVTE 452

Query: 421 HGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
              +K   VG +   + V+L  +++ +G  + VRIT     ++ GE++
Sbjct: 453 VSHDKLHYVGHNKSYEQVLLPMRDNLLGTRVHVRITSASKFSMVGEIL 500


>gi|302343165|ref|YP_003807694.1| RNA modification enzyme, MiaB family [Desulfarculus baarsii DSM
           2075]
 gi|301639778|gb|ADK85100.1| RNA modification enzyme, MiaB family [Desulfarculus baarsii DSM
           2075]
          Length = 428

 Score =  169 bits (429), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 111/399 (27%), Positives = 192/399 (48%), Gaps = 19/399 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +RF + S GC++N  ++  + D   + G+ RV      DL VL TC +   A+ +     
Sbjct: 4   KRFCLHSLGCKVNQAEAAHLADELTALGWTRVPEARRGDLAVLLTCAVTASASRQS---- 59

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
              R +     +  G   VV +GC  QAE +  L       +VVG     +L  +++R  
Sbjct: 60  ---RQMARRLARVAGPESVVASGCGVQAEAQAYLAEG---VIVVGRAELAQLARIIDRQA 113

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
           + ++        +     +  +  G  R RG    L +Q+GC+  C +C+VP TRG   S
Sbjct: 114 WPEQ--GPPPPPDAGAFCMGALQPGELRGRG---LLKVQDGCNAGCAYCIVPATRGRPRS 168

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRL 263
             L+Q V   R +   G  EI L G ++  W   GLD   K   ++LL ++       RL
Sbjct: 169 LPLAQAVAAFRGMAQAGAQEIVLTGIHLGRW---GLDLAGKPRLAELLEAMLAADDRPRL 225

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R ++    ++   L++       L P+ HLP+QSG DR+LK+M R ++A +Y Q++  + 
Sbjct: 226 RLSSLESHEIEPRLVQLAAAEPRLCPHFHLPLQSGDDRVLKAMGRPYSAAQYAQVVRDLA 285

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           +  P   + +D +VG PGE     R T++L++ +  +    F YSPR GT    M  +  
Sbjct: 286 AALPSPCLGADVLVGLPGEDHAAHRQTLELLESLPISYLHVFPYSPRPGTRAVEMPGRPS 345

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422
            +   +R   L++  + + ++F  + +G+ +EV++E  G
Sbjct: 346 GHEVGQRAAVLRRLGQAKHLAFLRSRIGRRLEVVVEGGG 384


>gi|268535520|ref|XP_002632893.1| Hypothetical protein CBG15101 [Caenorhabditis briggsae]
          Length = 437

 Score =  169 bits (429), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 126/446 (28%), Positives = 220/446 (49%), Gaps = 39/446 (8%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           V Q+ +V+++GC  N  DS  M  +    GY+ +   ++AD+ VLN+C ++  + ++   
Sbjct: 7   VGQKVWVRTWGCSHNTSDSEYMAGLLHKAGYDVLKEGENADVWVLNSCTVKTPSEQQA-- 64

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNV-VVGPQTYYRLPELLE 141
                 NL     ++G    +++AGCV+QA   E      + NV +VG +   R+ E++E
Sbjct: 65  -----NNLVVQGQEQGKK--IIMAGCVSQAAPSEPW----LQNVSIVGVKQIDRIVEVVE 113

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
               G +V     +  D    L  +     RK  +   L+I  GC   CT+C     RG 
Sbjct: 114 ETLKGNKVRLLTRNRPDALLSLPKM-----RKNELIEVLSISTGCLNNCTYCKTKMARGD 168

Query: 202 EISRSLSQVVDEARKLI-DNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI--- 257
            +S  L  +V++AR    D GV E+ L  +++ AW G+ ++       DLL +L ++   
Sbjct: 169 LVSYPLEDLVEQARAAFHDEGVKELWLTSEDLGAW-GRDIN---LVLPDLLNALVKVIPD 224

Query: 258 -----KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
                 G+    Y   H  ++++ L         +  +LH+PVQS SD +L  M R ++ 
Sbjct: 225 GCMMRLGMTNPPYILDHLEEIAEILNNPK-----VYAFLHIPVQSASDAVLTDMKREYSR 279

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
             + QI D +    P+I I++D I+ FP ET +DF  +M+LV K  +   F  +Y PR G
Sbjct: 280 RHFEQIADYMIENVPNIYIATDMILAFPTETLEDFEESMELVRKYKFPSLFINQYYPRSG 339

Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS 432
           TP +  L+++D  V+A +      +L      F +  +G+I  VL+ +   +K   VG +
Sbjct: 340 TPAAR-LKKID-TVEARKRTAAMSELFRSYTRFTEDRIGEIHNVLVTEIAADKIHGVGHN 397

Query: 433 PWLQSVVLNSKNHNIGDIIKVRITDV 458
              + +++  ++  +G+ I+VRIT V
Sbjct: 398 KSYEQILVPLEHCKMGEWIEVRITSV 423


>gi|189183909|ref|YP_001937694.1| hypothetical protein OTT_1002 [Orientia tsutsugamushi str. Ikeda]
 gi|189180680|dbj|BAG40460.1| hypothetical protein OTT_1002 [Orientia tsutsugamushi str. Ikeda]
          Length = 423

 Score =  169 bits (428), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 117/440 (26%), Positives = 216/440 (49%), Gaps = 32/440 (7%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V ++GC++N Y+S  ++         ++ ++D+  ++V NTC + ++A  +    + + +
Sbjct: 15  VITFGCRLNAYESEIIKQNL------KIANLDN--VVVFNTCTVTQEAERQAKQAIRKAK 66

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
                  +E  ++ ++V GC AQ    ++  + P VN ++G +     PE  +      +
Sbjct: 67  -------RENPNIKIIVTGCAAQ-NNPDLFNQMPQVNKILGNEEKL-YPEFYQFDENKIQ 117

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           V D     E     +S  DG         AF+ +Q GC+  CTFC++PY RG   S  + 
Sbjct: 118 VNDIMSIQETATHMISNFDGK------TRAFIQVQNGCNHRCTFCIIPYARGNSRSVPIG 171

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
            +  + + LI+ G  EI   G ++ ++ G  L G       +   L  +  L RLR ++ 
Sbjct: 172 VITQQIQLLINQGYKEIVFTGVDLTSY-GADLPGSPTLAQMIKRVLMLVPALPRLRLSSI 230

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
              ++   L K   D   LMP+ H+ +Q+G + ILK M RRHT  +  +  +++R + PD
Sbjct: 231 DIAEIDQELFKLMTDEPRLMPHFHISLQAGDNMILKRMKRRHTREQIIEFCNKMRKILPD 290

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
            +  +D I GFP ET+  F  +++L+ + G      F YS R  TP S M  QV ++++ 
Sbjct: 291 ASFGADMIAGFPTETEIMFNNSLNLISETGIQYLHVFPYSERENTPASKM-PQVQKHIRK 349

Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIG 448
           +R   L+ + ++Q   F    +G+I++VL+EK      +  G S       + ++   IG
Sbjct: 350 KRAQLLRNEGKKQLQLFFQQQIGKIVKVLVEK------EQFGHSENFIPTYIATR-QTIG 402

Query: 449 DIIKVRITDVKISTLYGELV 468
           +I+ V++T +    + G +V
Sbjct: 403 EIVNVKLTSINNDHMIGTVV 422


>gi|297171740|gb|ADI22732.1| 2-methylthioadenine synthetase [uncultured verrucomicrobium
           HF0500_27H16]
          Length = 439

 Score =  169 bits (428), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 115/394 (29%), Positives = 197/394 (50%), Gaps = 22/394 (5%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V + GC++N  ++  + D    +GY+ V     ADL V+NTC +   A  K  S + +  
Sbjct: 13  VHTLGCRLNQSETNLIRDQLVDRGYDIVPFGATADLAVINTCTVTRTADSKCRSAIRQF- 71

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPI--VNVVVGPQTYYRLPELLERARFG 146
                  +     +  V GC +Q   +EI   S I  V+V++G Q    + + +  A+  
Sbjct: 72  ------TRRNPAAITAVVGCYSQMGYKEI---SEIEGVDVIIGNQDKLNVLDYVGEAKNE 122

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
             V+  D    D F      +  +N++    A L IQ+GCD  CTFC++P+ RG   SR 
Sbjct: 123 VPVIVRDRIDRDDFTISFAGELPFNQR----ANLKIQDGCDFMCTFCIIPFARGRARSRD 178

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
              +++EA+ L+  GV E+ + G N+  ++  G +G      D++ +L ++ GL R+R +
Sbjct: 179 FQNLLEEAQNLVARGVRELIITGVNIGTYKHSG-EG----IVDIVDALDDLDGLTRIRIS 233

Query: 267 TSHPRDMSDCLIKAHGDLD-VLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
           +  P  + + L +   D    L+PYLH+P+Q+GSD IL++M R+++  E+   + +  + 
Sbjct: 234 SIEPTTIPEILFERMRDPSHALLPYLHIPLQAGSDEILEAMRRKYSVQEFLDFLAKADAA 293

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            PD+ I +D +VGFPGETD+ F  T        +A    F YS R GTP +   + V   
Sbjct: 294 VPDLCIGTDLMVGFPGETDEHFNQTCQTFLDGPFAYCHVFTYSERNGTPAAKRDDHVPVP 353

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419
            +  R   L++    ++  F +  + +   VL E
Sbjct: 354 ERKRRSAHLRRLNATRRHDFYERFLDREFPVLFE 387


>gi|300871406|ref|YP_003786279.1| putative 2-methylthioadenine synthetase [Brachyspira pilosicoli
           95/1000]
 gi|300689107|gb|ADK31778.1| putative 2-methylthioadenine synthetase [Brachyspira pilosicoli
           95/1000]
          Length = 440

 Score =  169 bits (428), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 135/462 (29%), Positives = 218/462 (47%), Gaps = 43/462 (9%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC-HIREKAAEKVYSF 83
           Q  ++ S GC+ N  D   +  +    GY+ V+  +DAD+IV+NTC  I +   E + + 
Sbjct: 2   QNIYLHSLGCEKNTVDGEHILAILNKNGYKIVDKAEDADVIVINTCAFIEDSKKESIDAI 61

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
                  K  + K      ++V+GC+++   E  +     V+  +G     ++   +E+ 
Sbjct: 62  FDHSLYKKYGKCKR-----LIVSGCMSERYKENFMEMFQEVDSAIGIHDLEKILTAVEKD 116

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            F     +T Y  ++ F+R+       N     +A++ I +GC   C+FC +P  RG   
Sbjct: 117 GFHDAEENTTY--KEYFDRI-------NTSTNYSAYIRISDGCHANCSFCAIPSIRGKHR 167

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVR 262
           SR +  +V EAR+   NG  EI L+      +   G D  +K    DLL  LS I G+  
Sbjct: 168 SRKIEDIVKEAREYAKNGAKEINLIAHETTYY---GYDIYKKLALPDLLKELSVIDGIEW 224

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE-YRQIIDR 321
           +R    +P  ++  +I A    + ++PY  +P+Q     ILK MNR +  Y  Y+ +I+ 
Sbjct: 225 IRVLYQNPVVLNKSIIDAMFKTEKVVPYFDIPLQHIDKDILKDMNRGNRGYSFYKDMINY 284

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           IRS   +  I +  IVGFPGET + F+  +  V K+   +   F YS    T    +L  
Sbjct: 285 IRSYDENAVIRTSLIVGFPGETVESFKKLVSFVKKMKLDRVGVFTYSEEENTDA--LLIN 342

Query: 382 VDENVKAERLLCLQKKLR------EQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWL 435
             +  K ++L+   K +R      E+++S     +G+ I+VLIEK  KE+ K +GRS + 
Sbjct: 343 KKKISKNKKLMLRDKLMRIALEVSEERLS---RFIGKSIDVLIEK--KEEDKFIGRSKYD 397

Query: 436 QSVV----------LNSKNHNIGDIIKVRITDVKISTLYGEL 467
              V           N  N NIGDI+KV+I       L G L
Sbjct: 398 APEVDGFVEVYFDKKNVDNINIGDIVKVKIVHNTEYDLVGNL 439


>gi|86136887|ref|ZP_01055465.1| MiaB-like tRNA modifying enzyme [Roseobacter sp. MED193]
 gi|85826211|gb|EAQ46408.1| MiaB-like tRNA modifying enzyme [Roseobacter sp. MED193]
          Length = 418

 Score =  169 bits (428), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 121/399 (30%), Positives = 194/399 (48%), Gaps = 37/399 (9%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  M+++  + G E        DL+V+NTC +  +A  K    + R+R  
Sbjct: 8   TLGCRLNAYETEAMKELSQAAGLE--------DLVVVNTCAVTAEAVRKSRQEIRRLR-- 57

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG------PQTYYRLPELLERAR 144
                ++     +VV GC AQ E E   +    V+ V+G      P+T+  +      A 
Sbjct: 58  -----RDNPQARIVVTGCAAQTEPETFAQMEE-VDTVLGNTEKMQPETWNGMA-----AN 106

Query: 145 F----GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           F     K  VD   SV +    L  +DG   R R   A++ +Q GCD  CTFC++PY RG
Sbjct: 107 FIGETEKVQVDDIMSVTETAGHL--IDGFGTRSR---AYVQVQNGCDHRCTFCIIPYGRG 161

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
              S     VVD+ ++L+D G  E+ L G ++ +W G  L         ++  L  +  L
Sbjct: 162 NSRSVPAGVVVDQIKRLVDRGYNEVVLTGVDLTSW-GADLPTTPKLGDLVMRILKLVPDL 220

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            RLR ++    ++ + L++A      LMP+LHL +Q G D ILK M RRH   +  +  +
Sbjct: 221 PRLRISSIDSIEVDENLMQAIATEPRLMPHLHLSLQHGDDMILKRMARRHLREDAIRFTE 280

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
               +RP++   +D I GFP ET+  F  ++ LV+         F YS R GTP + + +
Sbjct: 281 EALKLRPEMTFGADIIAGFPTETEAHFENSLKLVEDCQLTWLHVFPYSKRDGTPAAKIPK 340

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419
           QV+ N+   R   L+     +  S   A +G+  +VL+E
Sbjct: 341 QVNGNIIKSRAARLRAAGEARVQSHLAAQIGKTHQVLME 379


>gi|299769699|ref|YP_003731725.1| ribosomal protein S12 methylthiotransferase [Acinetobacter sp. DR1]
 gi|298699787|gb|ADI90352.1| ribosomal protein S12 methylthiotransferase [Acinetobacter sp. DR1]
          Length = 447

 Score =  169 bits (428), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 135/467 (28%), Positives = 220/467 (47%), Gaps = 50/467 (10%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  FV S GC   + DS R+     ++GY+  +  D ADL+V+NTC   E A ++    
Sbjct: 4   PKVGFV-SLGCPKALVDSERILTQLKTEGYQVASDYDGADLVVVNTCGFIESAVQESLDA 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G   + +N R        V+V GC+ + E ++I +  P V  V G   Y  + E +   
Sbjct: 63  IGEAMS-ENGR--------VIVTGCLGKDE-DKIRQMHPNVLKVTGAAAYQDVMEAVHEY 112

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
                         + F  L + + G        A+L I EGC+  CTFC++P  RG  +
Sbjct: 113 VPAP-------PKHNPFIDL-VPEQGIRLTPKHYAYLKISEGCNHRCTFCIIPSMRGDLV 164

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLY 252
           SR +  V++EA  L   GV EI ++ Q+ +A           W G+ +   K  F D+  
Sbjct: 165 SRPVGSVLEEAAALKRAGVKEILVISQDTSAYGVDTKYKLDFWNGQPV---KTKFFDMCE 221

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
           +L ++   VRL Y   +P   +   + A G +   +PYL +P Q  S R+LK M R   +
Sbjct: 222 ALGQLGIWVRLHYVYPYPHVDAVIDLMAQGKI---LPYLDIPFQHASPRVLKLMKRPAHS 278

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
               + I   R   PD+ I S F+VGFPGET++DF+  +D + +    +   F YSP  G
Sbjct: 279 ENTLEKIKLWREKCPDLVIRSTFVVGFPGETEEDFQILLDWLVEAQLDRVGCFTYSPVEG 338

Query: 373 TPGSNMLEQVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV 429
              +++ + V E +K    ER + +Q+++   ++      +GQ + VL++    E    V
Sbjct: 339 ATANDLPDHVPEEIKQERYERFMQVQQQISAAKLQKR---IGQTMTVLVDGLEDEYPVAV 395

Query: 430 GRS----PWLQSVV----LNSKNHNIGDIIKVRITDVKISTLYGELV 468
            RS    P +   V    ++      GDI++V ITD     L+ +L+
Sbjct: 396 ARSYADAPEIDGNVFVEDIDKSTIQPGDILEVEITDADEYDLFAKLI 442


>gi|297538125|ref|YP_003673894.1| MiaB-like tRNA modifying enzyme YliG [Methylotenera sp. 301]
 gi|297257472|gb|ADI29317.1| MiaB-like tRNA modifying enzyme YliG [Methylotenera sp. 301]
          Length = 445

 Score =  169 bits (428), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 137/468 (29%), Positives = 215/468 (45%), Gaps = 79/468 (16%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  FV S GC     D+ R+     ++GYE   S +DADL+V+NTC   + A E+    
Sbjct: 6   PKVGFV-SLGCPKAGSDAERILTQLRAEGYEISGSYEDADLVVVNTCGFIDSAVEESLDA 64

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT--------YYR 135
           +G     KN +        V+V GC+   +G  +    P V  V GP          +  
Sbjct: 65  IGEAI-AKNGK--------VIVTGCLGAKKGV-VEAAHPSVLAVTGPHALEEVMTAVHAN 114

Query: 136 LPELLER-----ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190
           LP+L E         G R+  + Y                       A+L I EGC+  C
Sbjct: 115 LPKLHEPFIDLVPPQGIRLTPSHY-----------------------AYLKISEGCNHRC 151

Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKG 239
           +FC++P  RG  +SR + +V++EA  L+  GV EI ++ Q+ +A           W G+ 
Sbjct: 152 SFCIIPSMRGDLVSRPIGEVLNEAENLVKAGVSEILVISQDTSAYGVDVKYRPGFWNGRP 211

Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
           +   K   ++L  SLS++    RL Y   +P    D +I    D  +++PYL +P Q  S
Sbjct: 212 V---KTRMTELCQSLSDLGVWTRLHYVYPYPH--VDEVIPLMAD-GLILPYLDVPFQHAS 265

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
            RILK+M R   A      I   R + PDI + S FI GFPGET+DDF+  +D +++   
Sbjct: 266 PRILKAMKRPAHAENNLARIKAWREICPDITVRSTFIAGFPGETEDDFQMLLDFLEEAQL 325

Query: 360 AQAFSFKYSPRLGTPGSNMLEQVDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEV 416
            +   F YS   G   + + +QV E VK ERL   + +Q+++   ++      +G I  V
Sbjct: 326 DRVGCFAYSAVDGAKANELPDQVPEEVKQERLSRFMEVQERISAAKLHNK---IGSIQTV 382

Query: 417 LI-------EKHGKEKGKLVGRSPWLQSVVL--NSKNHNIGDIIKVRI 455
           L+       E + +  G+    +P +  VV   ++     GD ++V I
Sbjct: 383 LVDEIVQDSEGNIEAIGRTKADAPEIDGVVYMEDADGLTPGDFVEVEI 430


>gi|308233982|ref|ZP_07664719.1| RNA modification enzyme, MiaB family protein [Atopobium vaginae DSM
           15829]
 gi|328944009|ref|ZP_08241474.1| MiaB family RNA modification enzyme [Atopobium vaginae DSM 15829]
 gi|327491978|gb|EGF23752.1| MiaB family RNA modification enzyme [Atopobium vaginae DSM 15829]
          Length = 421

 Score =  169 bits (428), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 127/410 (30%), Positives = 204/410 (49%), Gaps = 41/410 (10%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           VP+  F+ + GC++N  ++  +       G + VN  ++AD IV+NTC +  +A  K   
Sbjct: 3   VPKVAFI-NLGCRVNRVETDVIASELERAGCKVVNQ-NEADAIVINTCAVTGEAEAKTRK 60

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            + R  NL N          VV  GCVA    +E+   S I + V           L+ER
Sbjct: 61  IVRRAANLANVP-------FVVATGCVANLHADEL---SSIADNV-----------LVER 99

Query: 143 --ARFGKRVVD----TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
             AR  +RV+        SV+D  + +         + G+     +Q+GC+  C+FC+V 
Sbjct: 100 NKARVCQRVLGEFGCIAGSVDDDGDLVQTPTPTGRMRPGIK----VQDGCNNRCSFCIVW 155

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256
             RG   S S   V+   R  I +G  E+ L G N+  +R +   G +    DLL  + +
Sbjct: 156 KARGPARSVSCESVLASVRSSIAHGAREVVLTGINLGDFR-EIYHGSRVRLPDLLQLILD 214

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLD-VLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
              + R+R ++  P D++D L++        + P+LH+ +QSG +  LK M R +TA  Y
Sbjct: 215 ETPVERVRLSSIEPPDVTDELLRVMAQSQGRIAPFLHICLQSGCEATLKRMRRNYTASSY 274

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
              ++  R+  P IA+ +D IVGFPGETDD+F+ + D  ++IG+A+   F+YS R GTP 
Sbjct: 275 AAAVENARAYMPSIALGTDLIVGFPGETDDEFQTSYDFCERIGFAKMHVFRYSKREGTPA 334

Query: 376 SNMLEQVDENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422
           ++   QVD +V A R   +  L  ++R +Q       +GQ   VL++  G
Sbjct: 335 ASAPNQVDPHVMASRSKLMRELASRMRYEQAK---KLIGQTDRVLVQGVG 381


>gi|288573284|ref|ZP_06391641.1| MiaB-like tRNA modifying enzyme YliG [Dethiosulfovibrio
           peptidovorans DSM 11002]
 gi|288569025|gb|EFC90582.1| MiaB-like tRNA modifying enzyme YliG [Dethiosulfovibrio
           peptidovorans DSM 11002]
          Length = 431

 Score =  169 bits (428), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 118/453 (26%), Positives = 221/453 (48%), Gaps = 36/453 (7%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ ++ + GC  N  DS  +   F  + +  V+ +++ D+ ++NTC   + A E+    +
Sbjct: 2   KKIYILTLGCPKNSVDSEVLAGRFEPENWTLVDRVEECDIAIVNTCGFIQPAVEESIDVI 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL--ER 142
             +  +K     E     + V GC+    GE++ +  P V++    + +  L   L  + 
Sbjct: 62  LDLEEMKAQGTLEK----ICVVGCLVNRYGEDLKKEFPSVDLWAEAEDWDSLSRALGIDS 117

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            R G+R+               + +  + R      +L + EGCD  C+FC +P  RG  
Sbjct: 118 PRRGRRI---------------LTESPWTR------YLKVGEGCDTRCSFCTIPSIRGPL 156

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKGLV 261
            SR    +V EA KL + G  E+ L+GQ++  + G  L  ++ + S LL ++ +E+   +
Sbjct: 157 RSREPKDIVAEAVKLAEEGAKELCLVGQDLTVY-GSDL-SKRGSLSGLLDAMEAELPEDI 214

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
            LR    HP  + +  ++   +   ++P+L +P+Q     +L+ MNR       R++   
Sbjct: 215 WLRLFYLHPSRVDEASLERVLNSSRILPWLDIPIQHVDADVLRRMNRPPVEEHIRKLFKA 274

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
            R + PD A  +  +VGFPGET+  F++ +D V+ + + +  +F + P  GTP + M +Q
Sbjct: 275 GRRMFPDFAFRTTIMVGFPGETEKAFQSLLDFVEDVAFDRLGAFTFCPEEGTPAALMPDQ 334

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQS 437
           + ++ K  R   L +  +   ++     VG+ ++VLIE+  +E G   GRS    P +  
Sbjct: 335 IPQDEKDRRYAELMELQQGISLARQRGFVGKEMDVLIEEVDEEDGTRWGRSFRDAPEIDG 394

Query: 438 VV--LNSKNHNIGDIIKVRITDVKISTLYGELV 468
           +V    +K+   GD+++V ITD     L+GE V
Sbjct: 395 LVSISGAKDDVPGDMVRVSITDASEYDLFGERV 427


>gi|319406389|emb|CBI80030.1| conserved hypothetical protein [Bartonella sp. AR 15-3]
          Length = 427

 Score =  169 bits (428), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 113/373 (30%), Positives = 188/373 (50%), Gaps = 31/373 (8%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           + ++GC++N Y+S  +     S G +++      D I+ NTC +  +A  +    + + R
Sbjct: 5   IMTFGCRLNSYESEIIRKESTSAGLDKLKD----DTIIFNTCAVTAEAVRQAKQAIRKAR 60

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ------TYYRLPELLER 142
                  +E     ++V GC AQ E +        V++++G +      +Y +LP+    
Sbjct: 61  -------RENPHARIIVTGCAAQTEAKNFALMKE-VDLILGNEEKLHADSYRQLPD---- 108

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT-AFLTIQEGCDKFCTFCVVPYTRGI 201
             FG    D    V +  E   I     N   G T AF+ +Q GCD  CTFCV+PY RG 
Sbjct: 109 --FGINH-DEKLRVNNIMEVHKIAPHMINALEGRTRAFVQVQNGCDHRCTFCVIPYGRGP 165

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS-LSEIKGL 260
             S  +  ++++ +KL+DNG+ EI L G ++ ++ G  L G K T   L+ + L  +  L
Sbjct: 166 SRSVPMGIIIEQIKKLVDNGIQEIILTGVDLTSY-GPDLPG-KTTLGKLVSTILHHVPDL 223

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            RLR ++    ++   LI        +MP+LHL +Q+G + ILK M RRH      +   
Sbjct: 224 PRLRLSSIDSIEVDQELINLLTYEKRIMPHLHLSLQAGDNMILKRMKRRHLRENAIEFCQ 283

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
            +R+ RP I   +D I GFP ET++ F+ +++L+++ G      F +SPR GTP + M +
Sbjct: 284 SLRAKRPTIVYGADLIAGFPTETEEMFQNSLNLINECGLTHLHVFPFSPRKGTPAARMPQ 343

Query: 381 QVDENVK--AERL 391
              + +K  AE+L
Sbjct: 344 INHKTIKIRAEKL 356


>gi|309358985|emb|CAP33467.2| hypothetical protein CBG_15101 [Caenorhabditis briggsae AF16]
          Length = 535

 Score =  169 bits (428), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 126/446 (28%), Positives = 220/446 (49%), Gaps = 39/446 (8%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           V Q+ +V+++GC  N  DS  M  +    GY+ +   ++AD+ VLN+C ++  + ++   
Sbjct: 45  VGQKVWVRTWGCSHNTSDSEYMAGLLHKAGYDVLKEGENADVWVLNSCTVKTPSEQQA-- 102

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNV-VVGPQTYYRLPELLE 141
                 NL     ++G    +++AGCV+QA   E      + NV +VG +   R+ E++E
Sbjct: 103 -----NNLVVQGQEQGKK--IIMAGCVSQAAPSEPW----LQNVSIVGVKQIDRIVEVVE 151

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
               G +V     +  D    L  +     RK  +   L+I  GC   CT+C     RG 
Sbjct: 152 ETLKGNKVRLLTRNRPDALLSLPKM-----RKNELIEVLSISTGCLNNCTYCKTKMARGD 206

Query: 202 EISRSLSQVVDEARKLI-DNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI--- 257
            +S  L  +V++AR    D GV E+ L  +++ AW G+ ++       DLL +L ++   
Sbjct: 207 LVSYPLEDLVEQARAAFHDEGVKELWLTSEDLGAW-GRDIN---LVLPDLLNALVKVIPD 262

Query: 258 -----KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
                 G+    Y   H  ++++ L         +  +LH+PVQS SD +L  M R ++ 
Sbjct: 263 GCMMRLGMTNPPYILDHLEEIAEILNNPK-----VYAFLHIPVQSASDAVLTDMKREYSR 317

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
             + QI D +    P+I I++D I+ FP ET +DF  +M+LV K  +   F  +Y PR G
Sbjct: 318 RHFEQIADYMIENVPNIYIATDMILAFPTETLEDFEESMELVRKYKFPSLFINQYYPRSG 377

Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS 432
           TP +  L+++D  V+A +      +L      F +  +G+I  VL+ +   +K   VG +
Sbjct: 378 TPAAR-LKKID-TVEARKRTAAMSELFRSYTRFTEDRIGEIHNVLVTEIAADKIHGVGHN 435

Query: 433 PWLQSVVLNSKNHNIGDIIKVRITDV 458
              + +++  ++  +G+ I+VRIT V
Sbjct: 436 KSYEQILVPLEHCKMGEWIEVRITSV 461


>gi|124485405|ref|YP_001030021.1| hypothetical protein Mlab_0580 [Methanocorpusculum labreanum Z]
 gi|124362946|gb|ABN06754.1| MiaB-like tRNA modifying enzyme [Methanocorpusculum labreanum Z]
          Length = 416

 Score =  169 bits (428), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 123/447 (27%), Positives = 213/447 (47%), Gaps = 52/447 (11%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
            + ++YGC  N  D+ ++ ++  +QG    +S ++AD I++NTC + +K  + +Y     
Sbjct: 17  LYTETYGCTYNAGDTEKLMEIARNQGCVPASSAEEADAILINTCVVIDKTEQHMYE---- 72

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
                  R+      L+ V GC+     + +  R P ++++         P L+      
Sbjct: 73  -------RLDLYAGKLLFVTGCLPPVAADVLRTRYPKIHIID--------PALIHSCYME 117

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
              V T +                    G  A L I  GC+  CT+C+    RG  +S S
Sbjct: 118 ---VGTAHV-------------------GTNAVLQIARGCNGHCTYCITRLARGKLVSFS 155

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRY 265
              +V +A+ +++ G  EI L  Q+ ++W   GLD  +     DLL  L  I G   +R 
Sbjct: 156 AEDIVRQAKSIVEAGATEIQLTAQDTSSW---GLDRNDGLRLPDLLRQLCAIPGNFMIRI 212

Query: 266 TTSHPRDMS---DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
             ++P  +    D  + A  D  + + +LH+PVQSGSD +L+ M RR+T+ +Y +I  R 
Sbjct: 213 GMANPDTLLPILDDFLDALKDPKIFL-FLHIPVQSGSDSVLRLMGRRYTSAQYEEICQRA 271

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R   P+I IS+D+I GF GETD+D   + + + +    +    ++S R  TP + M +++
Sbjct: 272 RKAFPEIRISTDYIAGFSGETDEDAAKSAEQIRRTRPGKVNITRFSVRPNTPAAKM-KKI 330

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
            E +K +R   L     E   + N+A +G I+  ++ +  K  G +  R    Q++V+  
Sbjct: 331 PEPIKKQRSRELTDAANEVYDANNEALIGHIMTAVVTEVVK-AGSVTARDRTYQNIVI-M 388

Query: 443 KNHNIGDIIKVRITDVKISTLYGELVV 469
           +N  IG  I V+IT  +   L GE +V
Sbjct: 389 ENLEIGTEITVKITGHRRHYLIGERIV 415


>gi|320333384|ref|YP_004170095.1| 30S ribosomal protein S12 methylthiotransferase rimO [Deinococcus
           maricopensis DSM 21211]
 gi|319754673|gb|ADV66430.1| Ribosomal protein S12 methylthiotransferase rimO [Deinococcus
           maricopensis DSM 21211]
          Length = 477

 Score =  169 bits (428), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 129/459 (28%), Positives = 218/459 (47%), Gaps = 46/459 (10%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC   + DS R+     ++GY+   S +DAD +++NTC     A E+  + +G   + 
Sbjct: 24  SLGCPKALVDSERILTQLRAEGYQVAGSYEDADTVIVNTCGFITPAVEESLNAIGEALDA 83

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
                       V+V GC+ +   E I+ R P V  + G +       + +  R  + ++
Sbjct: 84  TGK---------VIVTGCLGE-RPETIMERHPKVAAITGSEA------VDDVMRHVRELL 127

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
             D   ++ F  L    G     R   A++ I EGC+  C+FC++P  RG+++SR    V
Sbjct: 128 PQD---DNPFTSLLPSTGVKLTPRHY-AYVKIAEGCNHTCSFCIIPKLRGLQVSRDAGAV 183

Query: 211 VDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYSLSEIKGLVR 262
           + EA +LI  G  E+ ++ Q+ +A+      R     GE  +    DL   L E+   VR
Sbjct: 184 LYEAFRLIAGGTKELMIISQDTSAYGVDVRYRESEFQGEQVRAHLVDLAQKLGEMGAWVR 243

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           + Y   +P   +   + A G +   +PYL +P+Q  +  +LK M RR  A +  + I R 
Sbjct: 244 MHYIYPYPHIENVVRLMAEGKI---LPYLDVPLQHAAPSVLKRM-RRPGAGKQLETIRRW 299

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R + P++ I S FIVGFPGET+ DF+  +D ++     +  +F YS       ++  ++V
Sbjct: 300 REICPELTIRSTFIVGFPGETESDFQLLLDFLEDARLDRVGAFTYSEVEEADATHFEDRV 359

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-----KLVGRS----P 433
            E VK ERL    +  +          VG++++V+I++   ++G     KL+GR+    P
Sbjct: 360 PEAVKQERLARFMEVAQRISAEKLQEKVGRVMDVIIDEFNDDEGDAPGTKLIGRTKGDAP 419

Query: 434 WLQSVVL-----NSKNHNIGDIIKVRITDVKISTLYGEL 467
            +   V       +    IGDI++  I D     LYGE+
Sbjct: 420 GIDGQVYLYAGDLAGQVKIGDIVEAIIEDADEYDLYGEV 458


>gi|254515177|ref|ZP_05127238.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [gamma
           proteobacterium NOR5-3]
 gi|219677420|gb|EED33785.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [gamma
           proteobacterium NOR5-3]
          Length = 461

 Score =  169 bits (428), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 133/418 (31%), Positives = 195/418 (46%), Gaps = 45/418 (10%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC   + DS R+       GY+ V + DDA+L+V+NTC   + A E+    +G     
Sbjct: 33  SLGCPKALVDSERILSQLKLDGYDIVGTYDDAELVVVNTCGFIDSAKEESLQAIGEA--- 89

Query: 91  KNSRIKEGGDLLVVVAGCVAQ-AEGEEILRRSPIVNVVVGPQTYYRLPELLER--ARFGK 147
               I E G   V+V GC+ + A+ E I    P V  V GP  Y  +   +         
Sbjct: 90  ----ISENG--RVIVTGCMGKGADAERIRSEHPKVLSVTGPAAYEEVVAAVHEYVPAPPP 143

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
           R V TD  +     RL+             A+L I EGC+  C+FC++P  RG  +SR +
Sbjct: 144 RDVFTDL-IPTSAVRLTPRH---------YAYLKISEGCNHRCSFCIIPSMRGDLVSRPI 193

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYSLSE 256
             V+DEA  L+ +GV E+ ++ Q+ +A           W+G+ L         L  +L E
Sbjct: 194 GDVMDEAEALVRSGVRELLVISQDTSAYGVDLKYRTGFWQGRPL---STRMESLCAALGE 250

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           +   VRL Y   +P       + A G +   +PYL +P Q  S  +LK M R     +  
Sbjct: 251 LGVWVRLHYVYPYPHVDKVIPLMAEGKI---LPYLDIPFQHASHAVLKRMKRPAATEKVL 307

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
             I   R++ PDI + S FIVGFPGETD +F   ++ +D+    +   F+YSP  G   +
Sbjct: 308 NRISNWRALCPDITLRSTFIVGFPGETDAEFEELLNFLDEAQLDRVGCFQYSPVTGAAAN 367

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFN--DACVGQIIEVLIEKHGKEKGKLVGRS 432
            +   V + +K ER       LR+Q +S     A VG+ IEVLI+    E    VGRS
Sbjct: 368 ELEGHVPDELKQERYERFM--LRQQAISAKRLQARVGREIEVLIDTVDHEGA--VGRS 421


>gi|134295817|ref|YP_001119552.1| ribosomal protein S12 methylthiotransferase [Burkholderia
           vietnamiensis G4]
 gi|238065312|sp|A4JEL4|RIMO_BURVG RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|134138974|gb|ABO54717.1| SSU ribosomal protein S12P methylthiotransferase [Burkholderia
           vietnamiensis G4]
          Length = 453

 Score =  169 bits (428), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 134/477 (28%), Positives = 218/477 (45%), Gaps = 61/477 (12%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  FV S GC   + DS ++     ++GYE   + D ADL+V+NTC   ++A ++    
Sbjct: 5   PKVGFV-SLGCPKALVDSEQIITQLRAEGYEISGTYDGADLVVVNTCGFIDEAVQESLDA 63

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCV---AQAEGEEILRR-SPIVNVVVGPQTYYRLPEL 139
           +G         + E G   V+V GC+   + A G  ++    P V  V GP     + + 
Sbjct: 64  IGEA-------LTENGK--VIVTGCLGAKSSASGSNLIEEVHPKVLAVTGPHAVGEVMQA 114

Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           +  +   K          D F  L +   G        A+L I EGC+  CTFC++P  R
Sbjct: 115 V-HSHLPKP--------HDPFVDL-VPAAGIKLTPRHYAYLKISEGCNHRCTFCIIPSMR 164

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFS 248
           G  +SR +++V+ EA  L  +GV E+ ++ Q+ +A           W GK +   K   +
Sbjct: 165 GDLVSRPVAEVMLEAENLFKSGVKELLVISQDTSAYGVDVKYRTGFWNGKPI---KTRMT 221

Query: 249 DLLYSLSEIKG----LVRLRYTTSHPRD------MSDCLIKAHGDLDVLMPYLHLPVQSG 298
           DL+ +L E+       VRL Y   +P        M++   K H     ++PYL +P Q  
Sbjct: 222 DLVAALGELAAQYGAWVRLHYVYPYPSVDEVIPLMAEGPFKGH-----VLPYLDVPFQHA 276

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
              +LK M R   A +  + + + R + PD+ I S FI GFPGET+  F   +D + +  
Sbjct: 277 HPDVLKRMKRPANAEKVLERVQKWREICPDLTIRSTFIAGFPGETEAQFETLLDFIREAE 336

Query: 359 YAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI 418
             +   F YSP  G   + +   + ++V+ ER     +   E         VG+ ++VLI
Sbjct: 337 LDRVGCFAYSPVEGATANELDGALPDDVREERRARFMEVAEEVSARRMQRKVGKTLKVLI 396

Query: 419 EKHGKEK--GKLVGRSPWLQSVVL------NSKNHNIGDIIKVRITDVKISTLYGEL 467
           ++ G E   G+    +P +  VV        SK + +GD + V+IT      L+GE+
Sbjct: 397 DEVGNEGGIGRTAADAPEIDGVVYVEPAAKASKRYKVGDFVSVKITGADGHDLWGEV 453


>gi|254373812|ref|ZP_04989295.1| hypothetical protein FTDG_01596 [Francisella novicida GA99-3548]
 gi|151571533|gb|EDN37187.1| hypothetical protein FTDG_01596 [Francisella novicida GA99-3548]
          Length = 439

 Score =  169 bits (428), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 129/457 (28%), Positives = 215/457 (47%), Gaps = 52/457 (11%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           +P+  FV S GC  N+ DS R+     ++GY+ V+S D+AD++++NTC     A ++   
Sbjct: 4   IPKIGFV-SLGCPKNLVDSERIITKLKAEGYDLVDSYDNADMVIVNTCGFLNSAIDESLD 62

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +G         I E G +LV   GC+   + + I  + P V  + GPQ Y  L   +E 
Sbjct: 63  VIGE-------AIAENGKVLV--TGCLGN-KADLIKEKHPEVLSITGPQDYENL---IEA 109

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
                 +   D+      + + +    Y       ++L I EGC+  CTFC++P  RG  
Sbjct: 110 VHTHAPIFANDFVSLVPPQGIKLTPRHY-------SYLKISEGCNNTCTFCIIPDIRGKL 162

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLL 251
            SRS+  ++ EA KL + GV E+ ++ Q+ +A           W  K     +    DL 
Sbjct: 163 KSRSIDNIMKEAEKLKNAGVKELLVISQDTSAYGVDIKYKSGIWNNKEY---QSNILDLA 219

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
            +L ++    RL Y   +P       + A G +   +PYL +P+Q  S  +LK M R   
Sbjct: 220 TALGDLDMWTRLHYVYPYPHVDKIVPLMAQGKI---LPYLDVPLQHSSPEVLKRMKRPAH 276

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
             +    I++ R + PDI I S FIVGFPGET+ DF   +D  +K    +   FKYS   
Sbjct: 277 TQKTLDRINKWRDICPDITIRSTFIVGFPGETEADFEHLLDFAEKAQLDRVGCFKYSEVE 336

Query: 372 GTPGSNMLEQVDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL 428
           G   +     + E +K +RL   + LQ ++   ++      VG   +V+I+   K++   
Sbjct: 337 GAKANQFDNLISEEIKQQRLDEFMGLQAQISADKLQ---RFVGTEQQVIIDVINKDENYA 393

Query: 429 VGRSPW------LQSVVLNS--KNHNIGDIIKVRITD 457
           +GR+ +       Q ++ ++  +N  +G+   V IT+
Sbjct: 394 IGRTKYDAPEVDGQVIIGDALERNLKVGEFATVEITE 430


>gi|15606200|ref|NP_213577.1| hypothetical protein aq_849 [Aquifex aeolicus VF5]
 gi|6226402|sp|O67016|RIMO_AQUAE RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|2983397|gb|AAC06982.1| hypothetical protein aq_849 [Aquifex aeolicus VF5]
          Length = 432

 Score =  169 bits (427), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 129/450 (28%), Positives = 222/450 (49%), Gaps = 49/450 (10%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA-EKVYSFLGRI 87
           V S GC  N+ DS  +       G E   + ++AD+I++NTC   E A  E + + L   
Sbjct: 5   VVSLGCAKNLVDSEILLGKLKGAGVELTPNPEEADVIIVNTCGFIEPAKLESIETILEFA 64

Query: 88  RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL--ERARF 145
            + K           V+V GC+ +   EE+ +  P V    G +++  +   L  +  + 
Sbjct: 65  ESGKE----------VIVMGCLVERYKEELEKEIPEVKAYFGTESWNEILNYLGLKEKKE 114

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            KR++ T  S                      A+L I EGC++ C+FC +P  RG   SR
Sbjct: 115 IKRILSTPRSY---------------------AYLKIAEGCNRLCSFCAIPKIRGRHRSR 153

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            + ++VDEA+ L D GV EI ++ Q+   + GK L  E     +LL  L +++G+  +R 
Sbjct: 154 KIEEIVDEAKFLADQGVKEICVVSQD-TTYYGKDLYKE-YKLVELLEGLEKVEGIKWIRL 211

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
              +P ++ + LI    + + ++PY  +P+Q  SDR+LK M R +     R +I+ IR  
Sbjct: 212 LYLYPTEVHEDLIDYVANSEKVLPYFDVPLQHVSDRVLKDMRRGYDGKFVRNLIENIRKK 271

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT---PGSNMLEQV 382
             +    + FIVGFP E+++DF+     V++  +     F YSP  GT   P  + + + 
Sbjct: 272 IENAVFRTTFIVGFPTESEEDFKELKKFVEEGHFHWLGVFTYSPEEGTHAYPLGDPIPRE 331

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-----KGKLVGRSPWLQS 437
            +  + E L+ +Q+ +  ++   N+  +G+ IEVLI+ + +E     KG+   ++P +  
Sbjct: 332 VKEERREELMAIQRGITRKK---NEEFLGKEIEVLIDGYEEEFSFVPKGRAYFQAPEVDG 388

Query: 438 VVL--NSKNHNIGDIIKVRITDVKISTLYG 465
           VV   +S++   GDI+KV++T V    L G
Sbjct: 389 VVYVESSRDLKSGDILKVKVTQVADYDLAG 418


>gi|293609257|ref|ZP_06691559.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292827709|gb|EFF86072.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 452

 Score =  169 bits (427), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 135/467 (28%), Positives = 220/467 (47%), Gaps = 50/467 (10%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  FV S GC   + DS R+     ++GY+  +  D ADL+V+NTC   E A ++    
Sbjct: 9   PKVGFV-SLGCPKALVDSERILTQLKTEGYQVASDYDGADLVVVNTCGFIESAVQESLDA 67

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G   + +N R        V+V GC+ + E ++I +  P V  V G   Y  + E +   
Sbjct: 68  IGEAMS-ENGR--------VIVTGCLGKDE-DKIRQMHPNVLKVTGAAAYQDVMEAVHEY 117

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
                         + F  L + + G        A+L I EGC+  CTFC++P  RG  +
Sbjct: 118 VPAP-------PKHNPFVDL-VPEQGIRLTPKHYAYLKISEGCNHRCTFCIIPSMRGDLV 169

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLY 252
           SR +  V++EA  L   GV EI ++ Q+ +A           W G+ +   K  F D+  
Sbjct: 170 SRPVGSVLEEAAALKRAGVKEILVISQDTSAYGVDTKYKLDFWNGQPV---KTKFFDMCE 226

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
           +L ++   VRL Y   +P   +   + A G +   +PYL +P Q  S RILK M R   +
Sbjct: 227 ALGQLGIWVRLHYVYPYPHVDAVIDLMAQGKI---LPYLDIPFQHASPRILKLMKRPAHS 283

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
               + I   R   PD+ I S F+VGFPGET++DF+  +D + +    +   F YSP  G
Sbjct: 284 ENTLEKIKLWREKCPDLVIRSTFVVGFPGETEEDFQILLDWLVEAELDRVGCFTYSPVEG 343

Query: 373 TPGSNMLEQVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV 429
              +++ + V E +K    ER + +Q+++   ++      +GQ + VL++    E    V
Sbjct: 344 ATANDLPDHVPEEIKQERYERFMQVQQQISAAKLQKR---IGQTMTVLVDSLEDEYPVAV 400

Query: 430 GRS----PWLQSVV----LNSKNHNIGDIIKVRITDVKISTLYGELV 468
            RS    P +   V    ++      GD+++V ITD     L+ +L+
Sbjct: 401 ARSYADAPEIDGNVFVEDIDKSTIQPGDMLEVEITDADEYDLFAKLI 447


>gi|171186225|ref|YP_001795144.1| RNA modification protein [Thermoproteus neutrophilus V24Sta]
 gi|170935437|gb|ACB40698.1| RNA modification enzyme, MiaB family [Thermoproteus neutrophilus
           V24Sta]
          Length = 415

 Score =  169 bits (427), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 141/458 (30%), Positives = 217/458 (47%), Gaps = 61/458 (13%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + +V++YGC +   D+   E +    G ER +S ++ADL+++ TC +RE          G
Sbjct: 3   KIYVETYGCWLAKADA---EVVRQRLGLERADSPEEADLVLVYTCAVRED---------G 50

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +R L   R   G    +VVAGC+A+      LR   + +   G +  Y  P  +E  R 
Sbjct: 51  EVRQLARIRELAGLGRRMVVAGCLAR------LRPYTVKSAAPGAELLY--PSQVEGGR- 101

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG---IE 202
                      E +  RL   +GG      V     +Q GC   CTFC   YTRG     
Sbjct: 102 -----------EREMRRLPRYEGG------VVYVAPLQVGCLGNCTFCATKYTRGGAGYV 144

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNV------NAWRGKGLDGEKCTFSDLLYS-LS 255
            S S   VV   R+ +  G  E+ L GQ+V        WRG           DLL   L 
Sbjct: 145 RSASPDDVVAHVREAVARGAREVYLTGQDVITYGFDAGWRGG------WNLPDLLERILR 198

Query: 256 EIKGLVRLRYTTSHP---RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
           E++G  R+R   S P      +D L+        +  Y HLPVQSGSDR+L++M RR+T 
Sbjct: 199 EVEGDYRVRIGMSEPWVFAKFADQLLDVVKRDGRVYRYFHLPVQSGSDRVLRAMGRRYTV 258

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
            EYR+++ +IR    D  I++D IVGFPGE +++F  ++ LV+++ + +    ++SPR  
Sbjct: 259 GEYRELVRKIRRELGDAFIATDIIVGFPGEAEEEFVESVKLVEELKFDKVHVARFSPRPF 318

Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS 432
           T  + M  QV +  K  R   L +      +  N   VG+   VL+++   + G +VGR+
Sbjct: 319 TEAAVMPRQVPDAEKKRRSKILSEVAARVALLRNGERVGRREVVLVDE--VDHGLVVGRA 376

Query: 433 PWLQSVVL--NSKNHNIGDIIKVRITDVKISTLYGELV 468
              + VV+   + +  +G  + VRI       LYGE++
Sbjct: 377 SDYRQVVVKRGAGDELMGRFVDVRIAGAGPVYLYGEIL 414


>gi|262376194|ref|ZP_06069424.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Acinetobacter lwoffii
           SH145]
 gi|262308795|gb|EEY89928.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Acinetobacter lwoffii
           SH145]
          Length = 447

 Score =  169 bits (427), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 135/469 (28%), Positives = 218/469 (46%), Gaps = 54/469 (11%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  FV S GC   + DS R+     ++GY+  +  D ADL+V+NTC   E A ++    
Sbjct: 4   PKVGFV-SLGCPKALVDSERILTQLKTEGYDVASDYDGADLVVVNTCGFIESAVQESLDA 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G   +  N R        V+V GC+ + E ++I +  P V  V G   Y          
Sbjct: 63  IGEAMS-ANGR--------VIVTGCLGKDE-DKIRQMHPNVLKVTGAAAY---------- 102

Query: 144 RFGKRVVDTDYS-VEDKFERLSIVD----GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
              K V+D  +  V +  +    +D     G        A+L I EGC+  CTFC++P  
Sbjct: 103 ---KEVMDAVHQYVPEPPKHNPFIDLVPEQGIRLTPKHYAYLKISEGCNHRCTFCIIPSM 159

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTF 247
           RG  +SR +  V++EA  L   GV E+ ++ Q+ +A           W G+ +   K  F
Sbjct: 160 RGDLVSRPVGSVLEEAAALKRAGVKEVLVISQDTSAYGLDTKYKLDFWNGQPV---KTKF 216

Query: 248 SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307
            D+  +L ++   VRL Y   +P   +   + A G    ++PYL +P Q  S +ILK M 
Sbjct: 217 YDMCEALGQLGIWVRLHYVYPYPHVDAVIDLMAQGK---ILPYLDIPFQHASPKILKLMK 273

Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           R   +    + +   R   PD+ + S F+VGFPGET++DF+  +D + +    +   F Y
Sbjct: 274 RPAHSENTLERLKIWREKCPDLVLRSTFVVGFPGETEEDFQMLLDWLKEAQLDRVGCFTY 333

Query: 368 SPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK 427
           SP  G   +++ + V E +K ER     +  +E   +     +GQI+ VL++    E   
Sbjct: 334 SPVEGATANDLPDHVPEEIKQERYERFMQVQQEISAAKLQKRIGQIMTVLVDDLEDEFPV 393

Query: 428 LVGRS----PWLQSVV----LNSKNHNIGDIIKVRITDVKISTLYGELV 468
            V RS    P +   V    ++      GD+++V ITD     LY +L+
Sbjct: 394 AVARSYADAPEIDGNVFVEDIDKSVIKAGDLLEVEITDADEYDLYAKLI 442


>gi|148284718|ref|YP_001248808.1| MiaB-like tRNA modifying enzyme [Orientia tsutsugamushi str.
           Boryong]
 gi|146740157|emb|CAM80374.1| MiaB-like tRNA modifying enzyme [Orientia tsutsugamushi str.
           Boryong]
          Length = 423

 Score =  169 bits (427), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 118/440 (26%), Positives = 216/440 (49%), Gaps = 32/440 (7%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V ++GC++N Y+S  ++         ++ ++D+  +IV NTC + ++A  +    + + +
Sbjct: 15  VITFGCRLNAYESEIIKQNL------KIANLDN--VIVFNTCTVTQEAERQAKQAIRKAK 66

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
                  +E  ++ ++V GC AQ    ++  + P VN ++G +     PE  +      +
Sbjct: 67  -------RENPNIKIIVTGCAAQ-NNPDLFNQMPQVNKILGNEEKL-YPEFYQFDENKIQ 117

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           V D     E     +S  DG         AF+ +Q GC+  CTFC++PY RG   S  + 
Sbjct: 118 VNDIMSIQETATHMISNFDGK------TRAFIQVQNGCNHRCTFCIIPYVRGNSRSVPIG 171

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
            +  + + LI+ G  EI   G ++ ++ G  L G       +   L  +  L RLR ++ 
Sbjct: 172 VITQQIQLLINQGYKEIVFTGVDLTSY-GADLPGSPTLAQMIKRVLMLVPALPRLRLSSI 230

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
              ++   L K   D   LMP+ H+ +Q+G + ILK M RRHT  +  +  +++R + PD
Sbjct: 231 DIAEIDQELFKLMTDEPRLMPHFHISLQAGDNMILKRMKRRHTREQIIEFCNKMRKILPD 290

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
            +  +D I GFP ET+  F  +++L+ + G      F YS R  TP S M  QV ++++ 
Sbjct: 291 ASFGADMIAGFPTETEIMFNNSLNLISETGIQYLHVFPYSERENTPASKM-PQVQKHIRK 349

Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIG 448
           +R   L+ + ++Q   F    +G+I++VL+EK      +  G S       + ++   IG
Sbjct: 350 KRAQLLRNEGKKQLQLFFQQQIGKIVKVLVEK------EQFGHSENFIPTYIATR-QTIG 402

Query: 449 DIIKVRITDVKISTLYGELV 468
           +I+ V++T +    + G +V
Sbjct: 403 EIVNVKLTGIDNDHMTGTVV 422


>gi|209885320|ref|YP_002289177.1| hypothetical protein OCAR_6198 [Oligotropha carboxidovorans OM5]
 gi|238066423|sp|B6JF93|RIMO_OLICO RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|209873516|gb|ACI93312.1| conserved hypothetical protein [Oligotropha carboxidovorans OM5]
          Length = 440

 Score =  169 bits (427), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 133/469 (28%), Positives = 222/469 (47%), Gaps = 49/469 (10%)

Query: 18  VDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA 77
           ++Q + P+  FV S GC   + DS R+     ++GYE     D AD+++++TC   + A 
Sbjct: 1   MNQGVPPKISFV-SLGCPKALVDSERIITRLRAEGYELARKHDGADIVIVSTCGFLDSAK 59

Query: 78  EKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLP 137
           ++    +G         + E G   V+V GC+  AE E+I +  P +  + GPQ Y  + 
Sbjct: 60  QESLGAIGEA-------MAENGK--VIVTGCMG-AEPEQIEKEYPNLLSITGPQQYESVL 109

Query: 138 ELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197
           + + RA         D           +   G        A+L I EGC+  CTFC++P 
Sbjct: 110 DAVHRALPPLHNPHLDL----------LPPQGIKLTPRHYAYLKISEGCNNRCTFCIIPK 159

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCT 246
            RG  +SR    V+ EA KL+  GV E+ ++ Q+ +A           W+ + +   +  
Sbjct: 160 LRGDLVSRPADDVLREAEKLVVAGVKELLVVSQDTSAYGIDIKYAPSAWKDREV---RAR 216

Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306
           F DL   L E+   VRL+Y   +P  + D +    G++   +PYL +P Q  +  +LK M
Sbjct: 217 FVDLARELGELGAWVRLQYVYPYPH-VDDVIPLMGGNI---LPYLDIPFQHANTEVLKRM 272

Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
            R     +    I + R   PD+ + S FIVGFPGET+ +F+  +D +D+    +   FK
Sbjct: 273 RRPAAQDKTLARIHKWREQCPDLTLRSTFIVGFPGETESEFQDLLDWLDEAQIDRLGCFK 332

Query: 367 YSPRLGTPGSNMLEQVDENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK 423
           Y P  G   + +   V + +K  R   L+  Q+K+  Q++      VG   +V+I++ G 
Sbjct: 333 YEPVAGATSNALENPVPDEIKTARWNALMARQQKISAQRLKRK---VGTRQQVIIDEVGP 389

Query: 424 E--KGKLVGRSPWLQ-SVVLNSKNH-NIGDIIKVRITDVKISTLYGELV 468
              KG+    +P +  SV + S+    +GDI+ V+I       L+G + 
Sbjct: 390 SVAKGRSKADAPQIDGSVYVASRRPLKVGDIVTVKIERADEYDLHGSVA 438


>gi|238066627|sp|A4VKC4|RIMO_PSEU5 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
          Length = 440

 Score =  169 bits (427), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 137/463 (29%), Positives = 223/463 (48%), Gaps = 58/463 (12%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC     DS R+      +GY+ V S +DAD++V+NTC   + A  +    +G     
Sbjct: 11  SLGCPKATVDSERILTQLRMEGYQIVPSYEDADVVVVNTCGFIDSAKAESLDAIGE---- 66

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               I E G   V+V GC+   E   I    P V  V GPQ Y ++   +          
Sbjct: 67  ---AIAENGK--VIVTGCMGVDENN-IRGVHPSVLAVTGPQQYEQVVNAVHEV------- 113

Query: 151 DTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209
               S+E D F  L    G     R   A+L I EGC+  C+FC++P  RG  +SR +  
Sbjct: 114 -VPPSIEHDPFVDLVPPQGIKLTPRHY-AYLKISEGCNHSCSFCIIPSMRGKLVSRPVGD 171

Query: 210 VVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYSLSEIK 258
           V+ EA +L+  GV E+ ++ Q+ +A           W G+ +   K    +L   L ++ 
Sbjct: 172 VLSEAERLVKAGVKEVLVISQDTSAYGVDLKYKLDFWNGQPV---KTRMLELCEELGKMG 228

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
             VRL Y   +P       + A G    ++PYL +P Q  S ++LK+M R   A+E + +
Sbjct: 229 VWVRLHYVYPYPNVDDVIPLMAAGK---ILPYLDIPFQHASPKVLKAMKR--PAFEDKTL 283

Query: 319 --IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
             I + R + P++ I S FIVGFPGET++DF+  +D + +    +   F+YSP  G P  
Sbjct: 284 ARIKKWREICPELTIRSTFIVGFPGETEEDFQYLLDWLTEAQLDRVGCFQYSPVDGAPAE 343

Query: 377 NM-LEQVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS 432
            M LE V + +K    +R +  Q+ +   ++      VG+ ++VLI++  ++    +GRS
Sbjct: 344 AMNLEPVPDEIKQDRWDRFMAHQQAISAARLQLK---VGKELDVLIDEVDEDGA--IGRS 398

Query: 433 PWLQS------VVLNSKNH-NIGDIIKVRITDVKISTLYGELV 468
            W  +      V ++S+     GD ++VR+T+     L+ E++
Sbjct: 399 -WADAPEIDGMVYVDSEQPLQPGDKVRVRVTNADEYDLWAEVI 440


>gi|171472312|gb|ACB46863.1| MiaB [Pseudomonas stutzeri]
 gi|327480352|gb|AEA83662.1| putative FeS oxidoreductase [Pseudomonas stutzeri DSM 4166]
          Length = 440

 Score =  169 bits (427), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 137/463 (29%), Positives = 223/463 (48%), Gaps = 58/463 (12%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC     DS R+      +GY+ V S +DAD++V+NTC   + A  +    +G     
Sbjct: 11  SLGCPKATVDSERILTQLRMEGYQIVPSYEDADVVVVNTCGFIDSAKAESLDAIGE---- 66

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               I E G   V+V GC+   E   I    P V  V GPQ Y ++   +          
Sbjct: 67  ---AIAENGK--VIVTGCMGVDENN-IRGVHPSVLAVTGPQQYEQVVNAVHEV------- 113

Query: 151 DTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209
               S+E D F  L    G     R   A+L I EGC+  C+FC++P  RG  +SR +  
Sbjct: 114 -VPPSIEHDPFVDLVPPQGIKLTPRHY-AYLKISEGCNHSCSFCIIPSMRGKLVSRPVGD 171

Query: 210 VVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYSLSEIK 258
           V+ EA +L+  GV E+ ++ Q+ +A           W G+ +   K    +L   L ++ 
Sbjct: 172 VLSEAERLVKAGVKEVLVISQDTSAYGVDLKYKLDFWNGQPV---KTRMLELCEELGKMG 228

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
             VRL Y   +P       + A G    ++PYL +P Q  S ++LK+M R   A+E + +
Sbjct: 229 VWVRLHYVYPYPNVDDVIPLMAAGK---ILPYLDIPFQHASPKVLKAMKR--PAFEDKTL 283

Query: 319 --IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
             I + R + P++ I S FIVGFPGET++DF+  +D + +    +   F+YSP  G P  
Sbjct: 284 ARIKKWREICPELTIRSTFIVGFPGETEEDFQYLLDWLTEAQLDRVGCFQYSPVDGAPAE 343

Query: 377 NM-LEQVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS 432
            M LE V + +K    +R +  Q+ +   ++      VG+ ++VLI++  ++    +GRS
Sbjct: 344 AMDLEPVPDEIKQDRWDRFMAHQQAISAARLQLK---VGKELDVLIDEVDEDGA--IGRS 398

Query: 433 PWLQS------VVLNSKNH-NIGDIIKVRITDVKISTLYGELV 468
            W  +      V ++S+     GD ++VR+T+     L+ E++
Sbjct: 399 -WADAPEIDGMVYVDSEQPLQPGDKVRVRVTNADEYDLWAEVI 440


>gi|302187178|ref|ZP_07263851.1| ribosomal protein S12 methylthiotransferase [Pseudomonas syringae
           pv. syringae 642]
          Length = 447

 Score =  169 bits (427), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 145/474 (30%), Positives = 235/474 (49%), Gaps = 65/474 (13%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  FV S GC   + DS R+      +GYE V + +DAD++V+NTC   + A  +    
Sbjct: 10  PKVGFV-SLGCPKALVDSERILTQLRMEGYEVVATYEDADVVVVNTCGFIDTAKAESLEV 68

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G         IKE G   V+V GC+   +   I    P V  V GPQ Y          
Sbjct: 69  IGE-------AIKENGK--VIVTGCMG-VDASVIRNVHPSVLSVTGPQQY---------- 108

Query: 144 RFGKRVVDTDYSV-EDKFERLSIVD----GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
              ++VV+  + V   + +   ++D     G        A+L I EGC+  C+FC++P  
Sbjct: 109 ---EQVVNAVHDVVPPRHDHNPLIDLVPPQGVKLTPRHYAYLKISEGCNHSCSFCIIPSM 165

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA------WRGKGLDGE--KCTFSDL 250
           RG  +SR +  V+DEA++L+ +GV E+ ++ Q+ +A      +R    DG+  K   ++L
Sbjct: 166 RGKLVSRPVGDVLDEAKRLVKSGVKELLVISQDTSAYGVDVKYRTGFWDGQPVKTRMTEL 225

Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
             +L  +   VRL Y   +P       + A G    ++PYL +P Q  S +ILK M R  
Sbjct: 226 CQALGSMGVWVRLHYVYPYPHVDELIPLMAAGK---ILPYLDIPFQHASPKILKLMKR-- 280

Query: 311 TAYEYRQIIDRIRSVR---PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
            A+E + +  RI++ R   PD+ I S FIVGFPGET++DF+  +D + +    +   F+Y
Sbjct: 281 PAFEDKTLA-RIKNWREQCPDLIIRSTFIVGFPGETEEDFQYLLDWLTEAQLDRVGCFQY 339

Query: 368 SPRLGTPGSNMLEQ--VDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422
           SP  G P +N+L+   V ++VK    +R +  Q+ +   ++      +G+ IEVLI++  
Sbjct: 340 SPVEGAP-ANLLDAAIVPDDVKQDRWDRFMAHQQAISAARLQMK---IGKEIEVLIDEV- 394

Query: 423 KEKGKLVGR----SPWLQSVVL----NSKNHNIGDIIKVRITDVKISTLYGELV 468
            ++G  VGR    +P +   V     +      GD I  R+TD     L+ E++
Sbjct: 395 DDRGA-VGRCFFDAPEIDGNVFIGLEDGSTVQPGDKIMCRVTDADEYDLWAEML 447


>gi|114800325|ref|YP_762198.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Hyphomonas neptunium ATCC
           15444]
 gi|114740499|gb|ABI78624.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Hyphomonas neptunium ATCC
           15444]
          Length = 425

 Score =  169 bits (427), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 129/436 (29%), Positives = 200/436 (45%), Gaps = 33/436 (7%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P    V + GC++N Y+S  M     + G          D +++NTC +  +A       
Sbjct: 7   PSSPTVITLGCRLNTYESEVMRRHAHAAGL--------GDAVIINTCAVTSEAVRGARQA 58

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
                       ++     ++V GC AQ +  E     P V  V+G     +        
Sbjct: 59  -------IRRAARDNPGAPILVTGCAAQTD-PEAFAAMPEVTRVIGNHDKMKAETWKPAD 110

Query: 144 RFG---KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
             G   K  V+   SV +    L  +DG   R R   A++ +Q GCD  CTFC++PY RG
Sbjct: 111 LLGGEEKIRVNDIMSVRETAAHL--IDGMEGRAR---AYVQVQNGCDHRCTFCIIPYGRG 165

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
              S    +VV + R L  +G  E+ L G ++ +W G  L G     + +   L  +  L
Sbjct: 166 NSRSVPAGEVVAQVRALAASGHYEVVLTGVDLTSW-GADLPGTPELGNLVQRILKLVPEL 224

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
             LR ++    +M D LI+A  D  V  PYLHL +Q G + ILK M RRH+  +  Q+ +
Sbjct: 225 RALRISSIDAIEMDDALIEALADPRV-APYLHLSLQHGDNLILKRMKRRHSRDQAIQLTE 283

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           R+R++RPDIA+ +D I GFP ET+  F  ++ L+D+ G +   +F YSPR GTP + M  
Sbjct: 284 RLRAMRPDIALGADIIAGFPTETEAHFENSLRLIDECGLSFLHAFPYSPRPGTPAAKM-P 342

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440
           Q+ + +  +R   L+       +   +  +GQ+   LIE+          R P    V L
Sbjct: 343 QLAKPLIKDRAARLRAAGEAALLRHFERHLGQVRLALIER------DTAARLPDFTQVKL 396

Query: 441 NSKNHNIGDIIKVRIT 456
           +      G +  V+IT
Sbjct: 397 SRAAGEGGRMTPVQIT 412


>gi|209964034|ref|YP_002296949.1| hypothetical protein RC1_0705 [Rhodospirillum centenum SW]
 gi|238066578|sp|B6IRQ0|RIMO_RHOCS RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|209957500|gb|ACI98136.1| conserved hypothetical protein [Rhodospirillum centenum SW]
          Length = 448

 Score =  169 bits (427), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 138/450 (30%), Positives = 215/450 (47%), Gaps = 61/450 (13%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC   + DS R+     S+GYE   S D AD++++NTC   + A  +    +G     
Sbjct: 22  SLGCPKALVDSERILTKLRSEGYEISGSYDGADVVLVNTCGFLDSAKTESLDAIGEA--- 78

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               IKE G   V+V GC+ + + E I    P V  V GP  Y ++            V 
Sbjct: 79  ----IKENGR--VIVTGCLGK-DAELIRETHPQVLAVTGPHQYEQV---------VAAVH 122

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
           D      D +  L    G     R   A+L I EGC+  CTFC++P  RG  +SR  + V
Sbjct: 123 DVVPPRHDPYLDLVPPQGLRLTPRHY-AYLKISEGCNNRCTFCIIPSIRGDLVSRPANLV 181

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE-----------KCTFSDLLYSLSEIKG 259
           + EA KL+  GV E+ ++ Q+ +A+   G+D +           +  F DL   L ++  
Sbjct: 182 LAEAEKLVKAGVKELLVVSQDTSAY---GVDLKYAESRHRNRPVRARFLDLCQELGQLGA 238

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
            VRL Y   +P       + A G +   +PYL +P Q  S R+LK+M R     ++ +I+
Sbjct: 239 WVRLHYVYPYPHVDEVIPLMAEGKV---LPYLDIPFQHASPRVLKAMRR---PADHERIL 292

Query: 320 DRIRSVR---PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
           +RI+  R   PD+ + S FIVGFPGET++DF+  +D + +    +   F+Y P  G   +
Sbjct: 293 ERIKGWRAGCPDLTLRSTFIVGFPGETEEDFQFLLDWLTEAQIDRLGCFQYEPVTGAKAN 352

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFND----ACVGQIIEVLIEKHGKEKGKLVGRS 432
            +   V + VK ER      +L + Q + +D    A +G+ IEVLI++  ++     GRS
Sbjct: 353 GIPGAVPDEVKEERW----HRLMQHQQAISDARMQARIGRSIEVLIDEVDEDGA--TGRS 406

Query: 433 PWLQS------VVLNSKNH-NIGDIIKVRI 455
            W  +      V LN +     GD++K  +
Sbjct: 407 -WADAPEIDGNVFLNGETDLKQGDLVKATV 435


>gi|262279364|ref|ZP_06057149.1| conserved hypothetical protein [Acinetobacter calcoaceticus
           RUH2202]
 gi|262259715|gb|EEY78448.1| conserved hypothetical protein [Acinetobacter calcoaceticus
           RUH2202]
          Length = 447

 Score =  169 bits (427), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 134/464 (28%), Positives = 216/464 (46%), Gaps = 44/464 (9%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  FV S GC   + DS R+     ++GY+  +  D ADL+V+NTC   E A ++    
Sbjct: 4   PKVGFV-SLGCPKALVDSERILTQLKTEGYQVASDYDGADLVVVNTCGFIESAVQESLDA 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G   + +N R        V+V GC+ + E ++I +  P V  V G   Y  + E +   
Sbjct: 63  IGEAMS-ENGR--------VIVTGCLGKDE-DKIRQMHPNVLKVTGAAAYQDVMEAVHEY 112

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
                         + F  L + + G        A+L I EGC+  CTFC++P  RG  +
Sbjct: 113 VPAP-------PKHNPFIDL-VPEQGIRLTPKHYAYLKISEGCNHRCTFCIIPSMRGDLV 164

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLY 252
           SR +  V++EA  L   GV EI ++ Q+ +A           W G+ +   K  F D+  
Sbjct: 165 SRPVGSVLEEAAALKRAGVKEILVISQDTSAYGVDTKYKLDFWNGQPV---KTKFFDMCE 221

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
           +L ++   VRL Y   +P   +   + A G +   +PYL +P Q  S RILK M R   +
Sbjct: 222 ALGQMGIWVRLHYVYPYPHVDAVIDLMAQGKI---LPYLDIPFQHASPRILKLMKRPAHS 278

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
               + I   R   PD+ I S F+VGFPGET++DF+  +D + +    +   F YSP  G
Sbjct: 279 ENTLEKIKLWREKCPDLVIRSTFVVGFPGETEEDFQLLLDWLVEAQLDRVGCFTYSPVEG 338

Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS 432
              +++ + V E +K ER     +  ++   +     +GQ + VL++    E    V RS
Sbjct: 339 ATANDLPDHVPEEIKQERYERFMQVQQQISAARLQKRIGQTMTVLVDSLEDEYPVAVARS 398

Query: 433 ----PWLQSVV----LNSKNHNIGDIIKVRITDVKISTLYGELV 468
               P +   V    ++      GD+++V ITD     L+ +L+
Sbjct: 399 YADAPEIDGNVFVEDIDKNTIQPGDMLEVEITDADEYDLFAKLI 442


>gi|146282114|ref|YP_001172267.1| putative FeS oxidoreductase [Pseudomonas stutzeri A1501]
 gi|145570319|gb|ABP79425.1| putative FeS oxidoreductase [Pseudomonas stutzeri A1501]
          Length = 460

 Score =  169 bits (427), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 134/460 (29%), Positives = 220/460 (47%), Gaps = 52/460 (11%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC     DS R+      +GY+ V S +DAD++V+NTC   + A  +    +G     
Sbjct: 31  SLGCPKATVDSERILTQLRMEGYQIVPSYEDADVVVVNTCGFIDSAKAESLDAIGE---- 86

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               I E G   V+V GC+   E   I    P V  V GPQ Y ++   +          
Sbjct: 87  ---AIAENGK--VIVTGCMGVDENN-IRGVHPSVLAVTGPQQYEQVVNAVHEV------- 133

Query: 151 DTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209
               S+E D F  L    G     R   A+L I EGC+  C+FC++P  RG  +SR +  
Sbjct: 134 -VPPSIEHDPFVDLVPPQGIKLTPRHY-AYLKISEGCNHSCSFCIIPSMRGKLVSRPVGD 191

Query: 210 VVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYSLSEIK 258
           V+ EA +L+  GV E+ ++ Q+ +A           W G+ +   K    +L   L ++ 
Sbjct: 192 VLSEAERLVKAGVKEVLVISQDTSAYGVDLKYKLDFWNGQPV---KTRMLELCEELGKMG 248

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
             VRL Y   +P       + A G    ++PYL +P Q  S ++LK+M R   A+E + +
Sbjct: 249 VWVRLHYVYPYPNVDDVIPLMAAGK---ILPYLDIPFQHASPKVLKAMKR--PAFEDKTL 303

Query: 319 --IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
             I + R + P++ I S FIVGFPGET++DF+  +D + +    +   F+YSP  G P  
Sbjct: 304 ARIKKWREICPELTIRSTFIVGFPGETEEDFQYLLDWLTEAQLDRVGCFQYSPVDGAPAE 363

Query: 377 NM-LEQVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVG 430
            M LE V + +K    +R +  Q+ +   ++      VG+ ++VLI++  ++   G+   
Sbjct: 364 AMNLEPVPDEIKQDRWDRFMAHQQAISAARLQLK---VGKELDVLIDEVDEDGAIGRSWA 420

Query: 431 RSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468
            +P +  +V       +  GD ++VR+T+     L+ E++
Sbjct: 421 DAPEIDGMVYVDSEQPLQPGDKVRVRVTNADEYDLWAEVI 460


>gi|219848510|ref|YP_002462943.1| MiaB-like tRNA modifying enzyme YliG [Chloroflexus aggregans DSM
           9485]
 gi|219542769|gb|ACL24507.1| MiaB-like tRNA modifying enzyme YliG [Chloroflexus aggregans DSM
           9485]
          Length = 456

 Score =  169 bits (427), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 133/467 (28%), Positives = 226/467 (48%), Gaps = 35/467 (7%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           ++ + + GC  N  DS  M+ +  ++G++ V S D+AD+I++NTC     A  +    LG
Sbjct: 2   KYHIVTLGCPKNAVDSEGMDGLLSAEGHQAVTSADEADVIIVNTCSFIAAARAET---LG 58

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR- 144
            ++ L   R + G  L  + AGC+AQ+   E++     V+  VG Q + ++  ++ +   
Sbjct: 59  VLQALAE-RKRPGQRL--IAAGCMAQSHPAEVMGVQG-VDGTVGTQQWTQIGAVVNQPAQ 114

Query: 145 --FGKRVVDTDYSVE-----DKFERLSIVDGGYNRKRGV----TAFLTIQEGCDKFCTFC 193
                 V    +++      +  + +S  D    + R      +A+L I +GC+  C FC
Sbjct: 115 PVIPLTVTQPTHTIPLTPTTNGAQPVSYADWRTTQIRRTRHTPSAYLKISDGCNLRCAFC 174

Query: 194 VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-RGKGLDGEKCTFSDLLY 252
            +P  +G   S+ +  V+ EA++L+  GV EI L+ Q++  + R  GL        D L 
Sbjct: 175 TIPSFKGDMRSKPVGAVLAEAQELVAQGVREIVLVAQHLTDYGRDLGLRDGLAILLDELC 234

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
            ++     +RL Y  ++P  +S+ LI        +  YL +P+Q      L+ M R    
Sbjct: 235 QVTPSDIWIRLMY--AYPHGISERLIATMASHPQICHYLDMPLQHAHPATLRRMRRPPDT 292

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
               ++I  +RS  PDIAI S FIVG+PGET  +F A ++ +      +  +F+YS   G
Sbjct: 293 DRTLRLIAELRSAMPDIAIRSTFIVGYPGETTAEFNALIEFLHTAQLDRVGAFRYSREPG 352

Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQV---SFNDACVGQIIEVLIEKHGK-EKGKL 428
           TP + +  QV  +V   R     + +R QQ+   + N   VG+ + VLIE +G  + G+ 
Sbjct: 353 TPAAELPAQVRPHVIERR---WHELMRVQQMISRARNQRWVGRTLTVLIEGNGATDDGQP 409

Query: 429 --VGRS----PWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
             VGRS    P +   V     H IG ++ VR+       L+GE+ V
Sbjct: 410 LSVGRSFRDAPEIDGQVFVWGTHPIGSMVSVRVMQATDYDLWGEVAV 456


>gi|300794023|ref|NP_001179620.1| CDK5 regulatory subunit-associated protein 1-like 1 [Bos taurus]
 gi|297489483|ref|XP_002697591.1| PREDICTED: CDK5 regulatory subunit associated protein 1-like 1 [Bos
           taurus]
 gi|296474090|gb|DAA16205.1| CDK5 regulatory subunit associated protein 1-like 1 [Bos taurus]
          Length = 578

 Score =  169 bits (427), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 125/456 (27%), Positives = 219/456 (48%), Gaps = 39/456 (8%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           Q+ +++++GC  N  D   M     + GY+   +  DADL +LN+C ++  A +    F 
Sbjct: 63  QKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAED---HFR 119

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             I+  +    K      +V+AGCV QA+  +   +      ++G Q   R+ E++E   
Sbjct: 120 NSIKKAQEENKK------IVLAGCVPQAQPRQDYLKG---LSIIGVQQIDRVVEVVEETI 170

Query: 145 FGKRVVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            G  V       +D  +RL  + +D    RK  +   ++I  GC   CT+C   + RG  
Sbjct: 171 KGHSVRLLGQK-KDNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNL 229

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI----- 257
            S  + ++VD A++    GVCEI L  ++  A+ G+ +     +   LL+ L E+     
Sbjct: 230 ASYPIDELVDRAKQSFQEGVCEIWLTSEDTGAY-GRDIGS---SLPALLWKLVEVIPEGA 285

Query: 258 ---KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
               G+    Y   H  +M+  L         +  +LH+PVQS SD +L  M R +   +
Sbjct: 286 MLRLGMTNPPYILEHLEEMAKILHHPR-----VYAFLHIPVQSASDTVLMEMKREYCVAD 340

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
           +++++D ++   P I I++D I GFPGETD DF+ T+ LV++  +   F  ++ PR GTP
Sbjct: 341 FKRVVDFLKDKVPGITIATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTP 400

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFN--DACVGQIIEVLIEKHGKEKGKLVGRS 432
            + M EQV   VK +R   L +       S+N  D  +GQ  +VL+ +   +    V  +
Sbjct: 401 AAKM-EQVPAQVKKQRTKELSRIFH----SYNPYDHKIGQRQQVLVTEESFDSKFYVAHN 455

Query: 433 PWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            + + V++      +G +++V I +     + G+ V
Sbjct: 456 RFYEQVLVPKNPTFMGKMVEVDIYESGKHFMKGQPV 491


>gi|260752719|ref|YP_003225612.1| ribosomal protein S12 methylthiotransferase [Zymomonas mobilis
           subsp. mobilis NCIMB 11163]
 gi|258552082|gb|ACV75028.1| MiaB-like tRNA modifying enzyme YliG [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
          Length = 443

 Score =  169 bits (427), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 125/451 (27%), Positives = 209/451 (46%), Gaps = 42/451 (9%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC   + DS R+     S+GY   +  D+AD++++NTC   + A E+    +G     
Sbjct: 15  SLGCPKALVDSERILTKLRSEGYNLSSQYDEADVVLVNTCGFIDSAKEESLDAIGEAMA- 73

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
           +N R        V+V GC+   E + I  R P +  + G Q Y    E++        + 
Sbjct: 74  ENGR--------VIVTGCLGN-EADRIRERFPDILAITGAQQY---EEVVSAVHDAAPIE 121

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
            + Y      + L +    Y+       +L I EGC+  C+FC++P  RG  +SR    +
Sbjct: 122 ASPYVDLVPEQGLKLTPRHYS-------YLKISEGCNHRCSFCIIPSLRGDLVSRRADAI 174

Query: 211 VDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYSLSEIKG 259
           + EA KL+  G  E+ ++GQ+ +A           W+ + +   K   +DL   L E+  
Sbjct: 175 LREAEKLVAAGTKELLVIGQDSSAYGVDLRHQEYRWKDRMV---KADLTDLARGLGELGA 231

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
            VRL Y   +P   +   + A G   +++PYL +P Q  S  +LK M R     +    +
Sbjct: 232 WVRLHYVYPYPHVDNLIPLMAEG---LILPYLDIPFQHASPSVLKRMKRPANEVKILDRL 288

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            + R + PDIA+ S F+VGF GET+ DF+  +D +D+    +  +F++    G   +   
Sbjct: 289 TKWREIVPDIALRSSFVVGFLGETEQDFQYLLDWLDEAQLDRVGAFRFEAVEGAAANAFD 348

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK---HGKEKGKLVGRSPWLQ 436
             V E VK ER   L +K  +   +   A +G+ I  +I++    G   G+    +P + 
Sbjct: 349 GAVPEEVKNERYQRLMEKAAQISEAKLQAKIGRDIATIIDRTDGEGGASGRSYADAPEID 408

Query: 437 SVV--LNSKNHNIGDIIKVRITDVKISTLYG 465
             V   ++ N  IGDI+ VR+ D     L+G
Sbjct: 409 GEVHLRDADNLKIGDIVTVRVEDADEHDLFG 439


>gi|241667259|ref|ZP_04754837.1| 2-alkenal reductase [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
 gi|254875810|ref|ZP_05248520.1| tRNA-methylthiotransferase miaB [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254841831|gb|EET20245.1| tRNA-methylthiotransferase miaB [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 439

 Score =  169 bits (427), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 130/454 (28%), Positives = 217/454 (47%), Gaps = 46/454 (10%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           +P+  FV S GC  N+ DS R+     ++GY+ V+S D+AD++++NTC     A ++   
Sbjct: 4   IPKIGFV-SLGCPKNLVDSERIITKLKAEGYDLVDSYDNADMVIVNTCGFLNSAIDESLE 62

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +G         I E G +LV   GC+   + + I  + P V  + GPQ Y  L   +E 
Sbjct: 63  VIGE-------AIAENGKVLV--TGCLGN-KADLIKEKHPEVLSITGPQDYENL---IEA 109

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
                 +   D+      + + +    Y       ++L I EGC+  CTFC++P  RG  
Sbjct: 110 VHTHAPIFANDFVSLVPPQGIKLTPRHY-------SYLKISEGCNNTCTFCIIPDIRGKL 162

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-------RGKGLDGE-KCTFSDLLYSL 254
            SRS+  ++ EA KL + GV E+ ++ Q+ +A+        G   D E +    DL  +L
Sbjct: 163 KSRSIDNIMKEAEKLKNAGVKELLVISQDTSAYGVDIKYKSGIWNDKEYQSNILDLATAL 222

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
            ++    RL Y   +P       + A G +   +PYL +P+Q  S  +LK M R     +
Sbjct: 223 GDLDMWTRLHYVYPYPHVDKIVPLMAQGKI---LPYLDVPLQHSSPEVLKRMKRPAHTQK 279

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
               I++ R + PDI I S FIVGFPGET+ DF   +D  +K    +   FKYS   G  
Sbjct: 280 TLDRINKWRDICPDITIRSTFIVGFPGETEADFEHLLDFAEKAQLDRVGCFKYSEVEGAK 339

Query: 375 GSNMLEQVDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR 431
            +     + E +K +RL   + LQ ++   ++      VG   +V+I+   K++   +GR
Sbjct: 340 ANQFDNLISEEIKQQRLDEFMGLQAQISADKLQ---RFVGIEQQVIIDVINKDENYAIGR 396

Query: 432 SPWL------QSVVLNS--KNHNIGDIIKVRITD 457
           + +       Q ++ ++  +N  +G+   V IT+
Sbjct: 397 TKYDAPEVDGQVIIGDALERNLKVGEFATVEITE 430


>gi|110678170|ref|YP_681177.1| MiaB-like tRNA modifying enzyme [Roseobacter denitrificans OCh 114]
 gi|109454286|gb|ABG30491.1| MiaB-like tRNA modifying enzyme, hypothetical [Roseobacter
           denitrificans OCh 114]
          Length = 417

 Score =  169 bits (427), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 131/446 (29%), Positives = 206/446 (46%), Gaps = 47/446 (10%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  M+++    G         +D +V+NTC +  +A  K  S + ++R  
Sbjct: 8   TLGCRLNAYETEAMKELAAEAGL--------SDAVVVNTCAVTGEAVRKARSTIRKLR-- 57

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV- 149
                +E     ++V GC AQ E  +     P VN V+G        E ++   +G    
Sbjct: 58  -----RENPTARLIVTGCAAQTE-PQTFAAMPEVNAVIGNT------EKMQGDTWGALAA 105

Query: 150 ----------VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
                     VD   SV +    L  +DG   R R   A++ +Q GCD  CTFC++PY R
Sbjct: 106 DFIGESEAVQVDDIMSVTETAGHL--IDGFGTRSR---AYVQVQNGCDHRCTFCIIPYGR 160

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G   S     VVD+ ++L+D G  E+ L G ++ +W G  L  +      ++  L  +  
Sbjct: 161 GNSRSVPAGVVVDQIKRLVDKGFNEVVLTGVDLTSW-GADLPAQPKLGDLVMRILRLVPD 219

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           L RLR ++    ++ + L++A      LMP+LHL +Q G D ILK M RRH   +  +  
Sbjct: 220 LPRLRISSIDSIEVDENLMQAIATEHRLMPHLHLSLQHGDDMILKRMKRRHLRDDAIRFA 279

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
              R +RPD+   +D IVGFP ET+  F  ++ LV++        F YS R GTP + M 
Sbjct: 280 QDARRLRPDMTFGADIIVGFPTETEAMFDNSLALVEECDLTWLHVFPYSARPGTPAARM- 338

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV 439
             V   +  ER   L+     Q      A VG++  VL+E   +      GR+     V 
Sbjct: 339 PAVHGQIIKERASRLRAAGDAQVQRHLSAQVGKVHNVLMESASR------GRTEQFTEVQ 392

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYG 465
           +++     G II + IT    + L G
Sbjct: 393 VSTPRQE-GRIIPLPITGTVGAALQG 417


>gi|91775949|ref|YP_545705.1| hypothetical protein Mfla_1596 [Methylobacillus flagellatus KT]
 gi|123254378|sp|Q1H0X3|RIMO_METFK RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|91709936|gb|ABE49864.1| SSU ribosomal protein S12P methylthiotransferase [Methylobacillus
           flagellatus KT]
          Length = 441

 Score =  169 bits (427), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 131/457 (28%), Positives = 213/457 (46%), Gaps = 42/457 (9%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  FV S GC     DS R+     ++GY    S DDADL+V+NTC   + A E+    
Sbjct: 6   PKVGFV-SLGCPKASSDSERILTQLRAEGYAISGSYDDADLVVVNTCGFIDSAVEESLDA 64

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G         + E G   V+V GC+  A+ + +    P V  V GP   + L E++   
Sbjct: 65  IGEA-------LAENGK--VIVTGCLG-AKSDVVKAAHPGVLAVTGP---HALEEVMTAV 111

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
                 +   Y+     + + +    Y       A+L I EGC+  C+FC++P  RG  +
Sbjct: 112 HANLPKLHDPYTDLVPPQGIRLTPQHY-------AYLKISEGCNHRCSFCIIPSMRGDLV 164

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLY 252
           SRS+  V+ EA  L++ GV E+ ++ Q+ +A           W G+ +   K   ++L  
Sbjct: 165 SRSIGDVMTEAENLVNAGVAELLVISQDTSAYGVDVKYRTGFWNGRPV---KTRMTELAR 221

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
           +L  +   VR+ Y   +P    D +I    D  +++PYL +P+Q  S RILK+M R  ++
Sbjct: 222 ALGSLGVWVRMHYVYPYPH--VDEIIPLMAD-GLILPYLDVPLQHASPRILKAMKRPASS 278

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
                 I+  R + PDI I S FIVGFPGETD+DF   ++ + +    +   F YS   G
Sbjct: 279 ENNLARINAWREICPDITIRSTFIVGFPGETDEDFECLLEFLQEAQLDRVGCFAYSAVDG 338

Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVG 430
              + +   V E +K ERL    +             +G+I  VLI+    ++  G+   
Sbjct: 339 AAANALDNPVPEPLKQERLARFMEVQESISAEKQRRKIGRIETVLIDDIDGDQAIGRTAA 398

Query: 431 RSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYG 465
            +P +  VV  S    +  GD+++ +I +     L+ 
Sbjct: 399 DAPEIDGVVYLSGADGLQPGDLVEAQIVNSDGHDLWA 435


>gi|325122523|gb|ADY82046.1| MiaB-like tRNA modifying enzyme YliG [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 447

 Score =  169 bits (427), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 134/467 (28%), Positives = 220/467 (47%), Gaps = 50/467 (10%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  FV S GC   + DS R+     ++GY+  +  D ADL+V+NTC   E A ++    
Sbjct: 4   PKVGFV-SLGCPKALVDSERILTQLKTEGYQVASDYDGADLVVVNTCGFIESAVQESLDA 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G   + +N R        V+V GC+ + E ++I +  P V  V G   Y  + E +   
Sbjct: 63  IGEAMS-ENGR--------VIVTGCLGKDE-DKIRQMHPNVLKVTGAAAYQDVMEAVHEY 112

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
                         + F  L + + G        A+L I EGC+  CTFC++P  RG  +
Sbjct: 113 VPAP-------PKHNPFVDL-VPEQGIRLTPKHYAYLKISEGCNHRCTFCIIPSMRGDLV 164

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLY 252
           SR +  V++EA  L   GV EI ++ Q+ +A           W G+ +   K  F D+  
Sbjct: 165 SRPVGSVLEEAAALKRAGVKEILVISQDTSAYGVDTKYKLDFWNGQPV---KTKFFDMCE 221

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
           +L ++   VRL Y   +P   +   + A G +   +PYL +P Q  S R+LK M R   +
Sbjct: 222 ALGQLGIWVRLHYVYPYPHVDAVIDLMAQGKI---LPYLDIPFQHASPRVLKLMKRPAHS 278

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
               + I   R   PD+ I S F+VGFPGET++DF+  +D + +    +   F YSP  G
Sbjct: 279 ENTLEKIKLWREKCPDLVIRSTFVVGFPGETEEDFQILLDWLVEAELDRVGCFTYSPVEG 338

Query: 373 TPGSNMLEQVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV 429
              +++ + V E +K    ER + +Q+++   ++      +GQ + VL++    E    V
Sbjct: 339 ATANDLPDHVPEEIKQERYERFMQVQQQISAAKLQKR---IGQTMTVLVDSLEDEYPVAV 395

Query: 430 GRS----PWLQSVV----LNSKNHNIGDIIKVRITDVKISTLYGELV 468
            RS    P +   V    ++      GD+++V ITD     L+ +L+
Sbjct: 396 ARSYADAPEIDGNVFVEDIDKSTIQPGDMLEVEITDADEYDLFAKLI 442


>gi|261416265|ref|YP_003249948.1| MiaB-like tRNA modifying enzyme YliG [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|261372721|gb|ACX75466.1| MiaB-like tRNA modifying enzyme YliG [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|302328140|gb|ADL27341.1| ribosomal protein S12 methylthiotransferase RimO [Fibrobacter
           succinogenes subsp. succinogenes S85]
          Length = 449

 Score =  168 bits (426), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 127/447 (28%), Positives = 217/447 (48%), Gaps = 32/447 (7%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + FV   GC  N  D+  +       G+   ++   AD I++NTC   E A E+      
Sbjct: 19  KVFVVHLGCAKNQVDAENLVGEMLHAGFATCDTAGKADYILVNTCGFIEAAKEE------ 72

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            I  +      +     ++V+GC++   GEE+++  P V+  VG    Y+  ELL++   
Sbjct: 73  SINAILAQAKAKKAKQKLIVSGCLSGRYGEELMKELPEVDYWVGT---YKPGELLKKMG- 128

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
              +V       +   R+++  GG++      A+L I EGC++ C +C +P  RG + SR
Sbjct: 129 ---IVAPQSCDAENLPRMNL--GGFSHH----AYLKIAEGCNRRCAYCAIPLIRGKQDSR 179

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAW-RGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           S+  +V EA+ L   GV EITL+ Q+   + R KG  G   T  +LL +L +   +  +R
Sbjct: 180 SIEDIVAEAKDLEAQGVKEITLIAQDTTYFGREKGKKG--GTLVELLRALLDNTNIPWIR 237

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
               +P  + D L+        L+ Y+ +P+Q  SD++LK+M R +   E   ++ +IR 
Sbjct: 238 MLYWYPMFVDDELLDLMAKEPRLVKYVDMPIQHASDKMLKNMKRNYRKKELVDLLHKIRE 297

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM-LEQVD 383
             P + + S  +VGFPGET +DF   M+L+  + +     F +SP  GTP   M L  VD
Sbjct: 298 RIPGVTLRSTVLVGFPGETHEDFEELMELLQDVQFDHLGGFVFSPEEGTPVMEMDLPAVD 357

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRSPWLQSVVLNS 442
           E+    RL  +     E    + +  +G+ ++++I++  +E +    GR+        NS
Sbjct: 358 ESDARARLEAVTDYQEELAAEYAENMIGKTVKIIIDQVAEESEYHFYGRTEG------NS 411

Query: 443 KNHNIGDIIKVRITDVKISTLYGELVV 469
             ++  DI+KV   D  +   +  LVV
Sbjct: 412 MEND--DIVKVIEGDGDVGEFHNALVV 436


>gi|307825688|ref|ZP_07655905.1| MiaB-like tRNA modifying enzyme [Methylobacter tundripaludum SV96]
 gi|307733265|gb|EFO04125.1| MiaB-like tRNA modifying enzyme [Methylobacter tundripaludum SV96]
          Length = 429

 Score =  168 bits (426), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 117/412 (28%), Positives = 204/412 (49%), Gaps = 26/412 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +  +K+ GC++N  +       F   G++     + A LIV+N+C + + AA K    + 
Sbjct: 2   KVHLKTLGCRLNEAELETWAQAFQKSGHQITKQAEAAHLIVINSCAVTQDAARKSRQLIR 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           RI    N + K      +VV+GC A    +E       V+++V  +   +L E       
Sbjct: 62  RIHR-DNPQAK------LVVSGCYATLNEDEAASLLG-VDLIVSNKDKDQLVE----KTL 109

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            +  +D+   +  +   +S+   G  R     AF+ +Q+GC   CTFC+V   RG E SR
Sbjct: 110 AELNMDSMPVLSTEPGEISLFTRGRQR-----AFVKVQDGCRYRCTFCIVTVARGEENSR 164

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            +  V+DE   L   G+ E+ L G ++  + G  L       SDL+ ++     + RLR 
Sbjct: 165 PVQAVIDEINALHRQGITEVILTGVHLGGY-GSDLGN---NLSDLIKAILAETDIPRLRL 220

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
            +  P ++     K   D   LMP+LHLP+QSGSD +L+ M RR    E+  I++++R+ 
Sbjct: 221 GSLEPWELPGDFFKLF-DNPRLMPHLHLPLQSGSDTVLRRMARRCKTEEFASIVNQLRAQ 279

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P+  +++D IVGFPGET+ +++ + + + + G+     F YS R GT  +++  Q+  +
Sbjct: 280 IPNFNVTTDIIVGFPGETEQEWQESFNFIKQTGFGHIHIFTYSSREGTKAASLPGQLSND 339

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK----EKGKLVGRSP 433
           +K +R   L +   E ++ F    VG    VL E + +    +K ++ G +P
Sbjct: 340 IKKQRSRQLHELAEEMKLKFFADNVGNQFPVLWEGYSEALADDKQRVFGYTP 391


>gi|126642021|ref|YP_001085005.1| hypothetical protein A1S_1976 [Acinetobacter baumannii ATCC 17978]
 gi|169633328|ref|YP_001707064.1| hypothetical protein ABSDF1679 [Acinetobacter baumannii SDF]
 gi|184158419|ref|YP_001846758.1| ribosomal protein S12 methylthiotransferase [Acinetobacter
           baumannii ACICU]
 gi|239501620|ref|ZP_04660930.1| 2-methylthioadenine synthetase [Acinetobacter baumannii AB900]
 gi|260551686|ref|ZP_05825760.1| 2-methylthioadenine synthetase [Acinetobacter sp. RUH2624]
 gi|332873910|ref|ZP_08441850.1| ribosomal protein S12 methylthiotransferase RimO [Acinetobacter
           baumannii 6014059]
 gi|238065268|sp|B2I330|RIMO_ACIBC RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|238065269|sp|B0VMU3|RIMO_ACIBS RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|238065270|sp|A3M659|RIMO_ACIBT RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|126387905|gb|ABO12403.1| hypothetical protein A1S_1976 [Acinetobacter baumannii ATCC 17978]
 gi|169152120|emb|CAP01019.1| conserved hypothetical protein [Acinetobacter baumannii]
 gi|183210013|gb|ACC57411.1| 2-methylthioadenine synthetase [Acinetobacter baumannii ACICU]
 gi|260405429|gb|EEW98923.1| 2-methylthioadenine synthetase [Acinetobacter sp. RUH2624]
 gi|322508743|gb|ADX04197.1| Putative uncharacterized protein [Acinetobacter baumannii 1656-2]
 gi|323518348|gb|ADX92729.1| ribosomal protein S12 methylthiotransferase [Acinetobacter
           baumannii TCDC-AB0715]
 gi|332737896|gb|EGJ68783.1| ribosomal protein S12 methylthiotransferase RimO [Acinetobacter
           baumannii 6014059]
          Length = 447

 Score =  168 bits (426), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 134/467 (28%), Positives = 220/467 (47%), Gaps = 50/467 (10%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  FV S GC   + DS R+     ++GY+  +  D ADL+V+NTC   E A ++    
Sbjct: 4   PKVGFV-SLGCPKALVDSERILTQLKTEGYQVASDYDGADLVVVNTCGFIESAVQESLDA 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G   + +N R        V+V GC+ + E ++I +  P V  V G   Y  + E +   
Sbjct: 63  IGEAMS-ENGR--------VIVTGCLGKDE-DKIRQMHPNVLKVTGAAAYQDVMEAVHEY 112

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
                         + F  L + + G        A+L I EGC+  CTFC++P  RG  +
Sbjct: 113 VPAP-------PKHNPFIDL-VPEQGIRLTPKHYAYLKISEGCNHRCTFCIIPSMRGDLV 164

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLY 252
           SR +  V++EA  L   GV EI ++ Q+ +A           W G+ +   K  F D+  
Sbjct: 165 SRPVGSVLEEAAALKRAGVKEILVISQDTSAYGVDTKYKLDFWNGQPV---KTKFFDMCE 221

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
           +L ++   VRL Y   +P   +   + A G +   +PYL +P Q  S R+LK M R   +
Sbjct: 222 ALGQLGIWVRLHYVYPYPHVDAVIDLMAQGKI---LPYLDIPFQHASPRVLKLMKRPAHS 278

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
               + I   R   PD+ I S F+VGFPGET++DF+  +D + +    +   F YSP  G
Sbjct: 279 ENTLEKIKLWREKCPDLVIRSTFVVGFPGETEEDFQILLDWLVEAQLDRVGCFTYSPVEG 338

Query: 373 TPGSNMLEQVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV 429
              +++ + V E +K    ER + +Q+++   ++      +GQ + VL++    E    V
Sbjct: 339 ATANDLPDHVPEEIKQERYERFMQVQQQISAAKLQKR---IGQTMTVLVDSLEDEYPVAV 395

Query: 430 GRS----PWLQSVV----LNSKNHNIGDIIKVRITDVKISTLYGELV 468
            RS    P +   V    ++      GD+++V ITD     L+ +L+
Sbjct: 396 ARSYADAPEIDGNVFVEDIDKSTIQPGDMLEVEITDADEYDLFAKLI 442


>gi|83949966|ref|ZP_00958699.1| MiaB-like tRNA modifying enzyme [Roseovarius nubinhibens ISM]
 gi|83837865|gb|EAP77161.1| MiaB-like tRNA modifying enzyme [Roseovarius nubinhibens ISM]
          Length = 419

 Score =  168 bits (426), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 128/439 (29%), Positives = 206/439 (46%), Gaps = 50/439 (11%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  M+++    G         +  +V+NTC +  +A  K    + R+R  
Sbjct: 9   TLGCRLNAYETEAMKELSAEAGL--------SGAVVVNTCAVTAEAVRKARQEIRRLR-- 58

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG------PQTYYRLP------- 137
                +E  D  ++V GC AQ E E        V+ V+G      P+T+  L        
Sbjct: 59  -----REHPDARLIVTGCAAQTEPETFTAMEE-VDAVIGNTEKMQPETWKGLAADFIGET 112

Query: 138 ELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197
           E+L+        VD   SV +    L  +DG   R R   A++ +Q GCD  CTFC++PY
Sbjct: 113 EMLQ--------VDDIMSVTETAGHL--IDGFGTRSR---AYVQVQNGCDHRCTFCIIPY 159

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257
            RG   S     VVD+ ++L+D G  E+ L G ++ +W G  L         ++  L  +
Sbjct: 160 GRGNSRSVPAGVVVDQIKRLVDRGYNEVVLTGVDLTSW-GADLPATPRLGDLVMRILKLV 218

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
             L RLR ++    ++ + L++A      LMP+LHL +Q G D ILK M RRH   +  +
Sbjct: 219 PDLPRLRISSIDSIEVDENLMQAIATEPRLMPHLHLSLQHGDDMILKRMKRRHLRDDAIR 278

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
             +  R +RP++   +D I GFP ET+  F  ++ LV+  G      F YS R GTP + 
Sbjct: 279 FAEEARRLRPEMTFGADIIAGFPTETEAHFENSLRLVEDCGLTWLHVFPYSRREGTPAAR 338

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQS 437
           +  QV+  V  +R   L++    +  +     VG+   VL+E         +GR+     
Sbjct: 339 IPNQVNGRVIRDRAARLRQAGEARVATHLAEQVGRAHRVLMEN------PRMGRTEQFTE 392

Query: 438 VVLNSKNHNIGDIIKVRIT 456
           V   + +   G I+ VRI+
Sbjct: 393 VEF-ATDQPEGQIVDVRIS 410


>gi|320329656|gb|EFW85645.1| ribosomal protein S12 methylthiotransferase [Pseudomonas syringae
           pv. glycinea str. race 4]
          Length = 447

 Score =  168 bits (426), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 146/474 (30%), Positives = 235/474 (49%), Gaps = 65/474 (13%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  FV S GC   + DS R+      +GYE V + +DAD++V+NTC   + A  +    
Sbjct: 10  PKVGFV-SLGCPKALVDSERILTQLRMEGYEVVATYEDADVVVVNTCGFIDTAKAESLEV 68

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G         IKE G   V+V GC+   +   I    P V  V GPQ Y          
Sbjct: 69  IGE-------AIKENGK--VIVTGCMG-VDANVIRDVHPSVLSVTGPQQY---------- 108

Query: 144 RFGKRVVDTDYSV----EDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
              ++VV+  + V    +D    + +V   G        A+L I EGC+  C+FC++P  
Sbjct: 109 ---EQVVNAVHDVVPPRKDHNPLIDLVPPQGVKLTPRHYAYLKISEGCNHSCSFCIIPSM 165

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA------WRGKGLDGE--KCTFSDL 250
           RG  +SR +  V+DEA++L+ +GV E+ ++ Q+ +A      +R    DG+  K   ++L
Sbjct: 166 RGKLVSRPVGDVLDEAKRLVKSGVKELLVISQDTSAYGVDVKYRTGFWDGQPVKTRMTEL 225

Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
             +L  +   VRL Y   +P       + A G    ++PYL +P Q  S +ILK M R  
Sbjct: 226 CQALGSMGVWVRLHYVYPYPHVDELIPLMAAGK---ILPYLDIPFQHASPKILKLMKR-- 280

Query: 311 TAYEYRQIIDRIRSVR---PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
            A+E + +  RI++ R   PD+ I S FIVGFPGET++DF+  +D + +    +   F+Y
Sbjct: 281 PAFEDKTLA-RIKNWREQCPDLIIRSTFIVGFPGETEEDFQYLLDWLTEAQLDRVGCFQY 339

Query: 368 SPRLGTPGSNMLEQ--VDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422
           SP  G P +N+L+   V ++VK    +R +  Q+ +   ++      +G+ IEVLI++  
Sbjct: 340 SPVEGAP-ANLLDAAIVPDDVKQDRWDRFMAHQQAISAARLQMK---IGKEIEVLIDEV- 394

Query: 423 KEKGKLVGR----SPWLQSVVL----NSKNHNIGDIIKVRITDVKISTLYGELV 468
            ++G  VGR    +P +   V           +GD I  R+TD     L+ E++
Sbjct: 395 DDRGA-VGRCFFDAPEIDGNVFIGLEEGSTVQLGDKIMCRVTDADEYDLWAEML 447


>gi|261368034|ref|ZP_05980917.1| RNA modification enzyme, MiaB family [Subdoligranulum variabile DSM
           15176]
 gi|282570022|gb|EFB75557.1| RNA modification enzyme, MiaB family [Subdoligranulum variabile DSM
           15176]
          Length = 446

 Score =  168 bits (426), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 134/451 (29%), Positives = 207/451 (45%), Gaps = 35/451 (7%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA-AEKVYSFLGRIRN 89
           S GC  N  D+         +G+  V    +AD+I++NTC   E A AE + + L     
Sbjct: 7   SLGCPKNQVDADVFCHALLKEGHTTVADPAEADVIIVNTCGFIESAKAEAIENIL----- 61

Query: 90  LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER---ARFG 146
           +     ++  DL V+V GC+A+   ++I++  P V+ V+G  +   +P ++ R   A  G
Sbjct: 62  MACQYKQQNPDLKVIVTGCLAERYKQQIVQEIPEVDAVIGIGSNAAIPAIVARVCAAGAG 121

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVT-----AFLTIQEGCDKFCTFCVVPYTRGI 201
           +        VE    +  +  GG    R ++     A+L I EGC+  C +C +P  RG 
Sbjct: 122 Q--------VESYGPKSDMPLGG---ARVISTPRHYAYLKIAEGCNNRCHYCAIPLIRGP 170

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGL 260
             SR +   V EAR L   GV E+ L+ Q+  A+   G D G+     +LL  L +I G+
Sbjct: 171 LRSRPIEDCVAEARWLAGEGVRELILVAQDPTAY---GEDWGKPGAVCELLDRLQQIDGI 227

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
             +R   ++P  +SD  I A      ++PYL LP+Q   D +LK+MNRR    +    I 
Sbjct: 228 RWIRILYAYPERISDAFIAAMVRNTKVVPYLDLPIQHCDDAVLKAMNRRGGRADIEDAIA 287

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           R+R+  P I + +  I GFPGET++ +    D V  + + +   F YS    T  + M  
Sbjct: 288 RLRAAIPGITLRTTLIAGFPGETEEQYAELCDFVKTMRFDRLGCFAYSAEENTVAAKMDG 347

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQ 436
           Q+DE  K  R   + +   E         VGQ +E + +    E G  + RS    P + 
Sbjct: 348 QLDEETKQRRADHIMELQAEVSADREKEKVGQTLECICDGVDDETGMYLLRSKADCPEID 407

Query: 437 SVVLNSKNH--NIGDIIKVRITDVKISTLYG 465
             VL   +     G    V ITD     LYG
Sbjct: 408 GNVLTPADTLLETGAFYNVTITDADTYDLYG 438


>gi|330968910|gb|EGH68976.1| ribosomal protein S12 methylthiotransferase [Pseudomonas syringae
           pv. aceris str. M302273PT]
          Length = 447

 Score =  168 bits (426), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 146/474 (30%), Positives = 235/474 (49%), Gaps = 65/474 (13%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  FV S GC   + DS R+      +GYE V + +DAD++V+NTC   + A  +    
Sbjct: 10  PKVGFV-SLGCPKALVDSERILTQLRMEGYEVVATYEDADVVVVNTCGFIDTAKAESLEV 68

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G         IKE G   V+V GC+   +   I    P V  V GPQ Y          
Sbjct: 69  IGE-------AIKENGK--VIVTGCMG-VDASVIRNVHPSVLSVTGPQQY---------- 108

Query: 144 RFGKRVVDTDYSV----EDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
              ++VV+  + V    +D    + +V   G        A+L I EGC+  C+FC++P  
Sbjct: 109 ---EQVVNAVHDVVPPRKDHNPLIDLVPPQGVKLTPRHYAYLKISEGCNHSCSFCIIPSM 165

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA------WRGKGLDGE--KCTFSDL 250
           RG  +SR +  V+DEA++L+ +GV E+ ++ Q+ +A      +R    DG+  K   ++L
Sbjct: 166 RGKLVSRPVGDVLDEAKRLVKSGVKELLVISQDTSAYGVDVKYRTGFWDGQPIKTRMTEL 225

Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
             +L  +   VRL Y   +P       + A G    ++PYL +P Q  S +ILK M R  
Sbjct: 226 CQALGSMGVWVRLHYVYPYPHVDELIPLMAAGK---ILPYLDIPFQHASPKILKLMKR-- 280

Query: 311 TAYEYRQIIDRIRSVR---PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
            A+E + +  RI++ R   PD+ I S FIVGFPGET++DF+  +D + +    +   F+Y
Sbjct: 281 PAFEDKTLA-RIKNWREQCPDLIIRSTFIVGFPGETEEDFQYLLDWLTEAQLDRVGCFQY 339

Query: 368 SPRLGTPGSNMLEQ--VDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422
           SP  G P +N+L+   V ++VK    +R +  Q+ +   ++      +G+ IEVLI++  
Sbjct: 340 SPVEGAP-ANLLDAAIVPDDVKQDRWDRFMAHQQAISAARLQMK---IGKEIEVLIDEV- 394

Query: 423 KEKGKLVGR----SPWLQSVVL----NSKNHNIGDIIKVRITDVKISTLYGELV 468
            ++G  VGR    +P +   V     +      GD I  R+TD     L+ E++
Sbjct: 395 DDRGA-VGRCFFDAPEIDGNVFIGLDDGSTVQPGDKIMCRVTDADEYDLWAEML 447


>gi|289674642|ref|ZP_06495532.1| hypothetical protein PsyrpsF_15357 [Pseudomonas syringae pv.
           syringae FF5]
 gi|330975344|gb|EGH75410.1| ribosomal protein S12 methylthiotransferase [Pseudomonas syringae
           pv. aptata str. DSM 50252]
          Length = 447

 Score =  168 bits (426), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 146/474 (30%), Positives = 235/474 (49%), Gaps = 65/474 (13%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  FV S GC   + DS R+      +GYE V + +DAD++V+NTC   + A  +    
Sbjct: 10  PKVGFV-SLGCPKALVDSERILTQLRMEGYEVVATYEDADVVVVNTCGFIDTAKAESLEV 68

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G         IKE G   V+V GC+   +   I    P V  V GPQ Y          
Sbjct: 69  IGE-------AIKENGK--VIVTGCMG-VDASVIRNVHPSVLSVTGPQQY---------- 108

Query: 144 RFGKRVVDTDYSV----EDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
              ++VV+  + V    +D    + +V   G        A+L I EGC+  C+FC++P  
Sbjct: 109 ---EQVVNAVHDVVPPRKDHNPLIDLVPPQGVKLTPRHYAYLKISEGCNHSCSFCIIPSM 165

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA------WRGKGLDGE--KCTFSDL 250
           RG  +SR +  V+DEA++L+ +GV E+ ++ Q+ +A      +R    DG+  K   ++L
Sbjct: 166 RGKLVSRPVGDVLDEAKRLVKSGVKELLVISQDTSAYGVDVKYRTGFWDGQPVKTRMTEL 225

Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
             +L  +   VRL Y   +P       + A G    ++PYL +P Q  S +ILK M R  
Sbjct: 226 CQALGSMGVWVRLHYVYPYPHVDELIPLMAAGK---ILPYLDIPFQHASPKILKLMKR-- 280

Query: 311 TAYEYRQIIDRIRSVR---PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
            A+E + +  RI++ R   PD+ I S FIVGFPGET++DF+  +D + +    +   F+Y
Sbjct: 281 PAFEDKTLA-RIKNWREQCPDLIIRSTFIVGFPGETEEDFQYLLDWLTEAQLDRVGCFQY 339

Query: 368 SPRLGTPGSNMLEQ--VDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422
           SP  G P +N+L+   V ++VK    +R +  Q+ +   ++      +G+ IEVLI++  
Sbjct: 340 SPVEGAP-ANLLDAAIVPDDVKQDRWDRFMAHQQAISAARLQMK---IGKEIEVLIDEV- 394

Query: 423 KEKGKLVGR----SPWLQSVVL----NSKNHNIGDIIKVRITDVKISTLYGELV 468
            ++G  VGR    +P +   V     +      GD I  R+TD     L+ E++
Sbjct: 395 DDRGA-VGRCFFDAPEIDGNVFIGLEDGSTVQPGDKIMCRVTDADEYDLWAEML 447


>gi|255263244|ref|ZP_05342586.1| conserved hypothetical protein [Thalassiobium sp. R2A62]
 gi|255105579|gb|EET48253.1| conserved hypothetical protein [Thalassiobium sp. R2A62]
          Length = 417

 Score =  168 bits (426), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 129/433 (29%), Positives = 209/433 (48%), Gaps = 39/433 (9%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  M+D+    G E        + +V+NTC +  +A  K    + ++R  
Sbjct: 8   TLGCRLNTYETHAMQDLAQRAGVE--------NAVVVNTCAVTAEAVRKAKQEIRKLR-- 57

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG------PQTYYRL-PELLERA 143
                ++  +  ++V GC AQ E  E  +    V+VV+G       +T+ ++ P+L+ + 
Sbjct: 58  -----RDHPEAKLIVTGCAAQTE-PETFKNMAEVDVVIGNTEKMQAETWQQMTPDLIGQT 111

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
              +  VD   SV      L  +DG   R R   A++ +Q GCD  CTFC++PY RG   
Sbjct: 112 EPVQ--VDDIMSVTKTAGHL--IDGFGTRSR---AYVQVQNGCDHRCTFCIIPYGRGNSR 164

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           S     VVD+ ++L D+G  E+ L G ++ +W G  L  +    + +L  L  +  L RL
Sbjct: 165 SVPAGVVVDQIKRLRDSGYNEVVLTGVDLTSW-GADLPAQPKLGNLVLRILKLVPDLPRL 223

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R ++    ++ D L++A      LMP+LHL +Q G D ILK M RRH   +  +  +  R
Sbjct: 224 RISSIDSIEVDDALMQAIATEPRLMPHLHLSLQHGDDLILKRMKRRHLRDDAIRFSEDAR 283

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
            +RP++   +D I GFP ETD  F  ++ LV+         F YS R+GTP + M   V+
Sbjct: 284 KLRPEMTFGADIIAGFPTETDAHFENSLRLVEDCHLTWLHVFPYSARIGTPAAKM-PAVN 342

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
             V  ER   L++       +  +A + +   VL+E         +GR+     V   SK
Sbjct: 343 GKVIKERAARLREAGAAAVQTHLNAQLDRTHHVLMENPN------MGRTEQFTPVQF-SK 395

Query: 444 NHNIGDIIKVRIT 456
               G I+   IT
Sbjct: 396 PQVEGSIVTTNIT 408


>gi|332521166|ref|ZP_08397624.1| MiaB-like tRNA modifying enzyme YliG [Lacinutrix algicola 5H-3-7-4]
 gi|332043259|gb|EGI79456.1| MiaB-like tRNA modifying enzyme YliG [Lacinutrix algicola 5H-3-7-4]
          Length = 435

 Score =  168 bits (426), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 137/454 (30%), Positives = 229/454 (50%), Gaps = 45/454 (9%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V + GC  NVYDS  +     + G E V+  +  +++V+NTC     A E+  + +    
Sbjct: 13  VITLGCSKNVYDSEVLMGQLKANGKEVVHEQE-GNIVVINTCGFINNAKEESVNTI---- 67

Query: 89  NLKNSRIKEGGDL-LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147
            L+  + KE GD+  V V GC+++    ++ +  P V+   G      LP LL       
Sbjct: 68  -LEYMQKKEDGDVDKVFVTGCLSERYKPDLEKEIPNVDQYFGTT---ELPGLL------- 116

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
           + +  DY  E   ERL+     Y       A+L I EGCD+ C+FC +P  RG   S  +
Sbjct: 117 KALGADYKHELIGERLTTTPKNY-------AYLKIAEGCDRPCSFCAIPLMRGKHKSTPI 169

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGL--VRLR 264
             +V EA KL  NGV E+ L+ Q++  +   GLD  +K   ++LL +L +++G+  +RL 
Sbjct: 170 EDLVTEAEKLAANGVKELILIAQDLTYY---GLDLYKKRNLAELLENLVKVEGIEWIRLH 226

Query: 265 YT--TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           Y   T  P D+ D + +       +  YL +P+Q  SD ILKSM R  T  +  +++   
Sbjct: 227 YAFPTGFPMDVLDIMKREPK----ICNYLDIPLQHISDNILKSMRRGTTKEKTTKLLKEF 282

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+  P++ I +  I G+PGET+++F+   + V ++ + +   F YS    T   N+ + V
Sbjct: 283 RAKVPEMTIRTTLIAGYPGETEENFQELKEWVREMRFERLGCFTYSHEENTHAFNLEDDV 342

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQS- 437
            E VK +R+  + +   +     N A +GQ  +V+I++  KE    VGR    SP + + 
Sbjct: 343 PEEVKMQRVNEIMEIQSQISWELNQAKIGQEFKVVIDR--KEGNYFVGRTEFDSPDVDNE 400

Query: 438 VVLNSKN--HNIGDIIKVRITDVKISTLYGELVV 469
           V++++K      G+   V+I + +   LYGE+V 
Sbjct: 401 VLIDAKTVYLKTGEYTTVKIIEAEDFDLYGEVVT 434


>gi|326334467|ref|ZP_08200679.1| MiaB family RNA modification enzyme [Capnocytophaga sp. oral taxon
           338 str. F0234]
 gi|325693434|gb|EGD35361.1| MiaB family RNA modification enzyme [Capnocytophaga sp. oral taxon
           338 str. F0234]
          Length = 435

 Score =  168 bits (426), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 130/457 (28%), Positives = 219/457 (47%), Gaps = 35/457 (7%)

Query: 20  QCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC-HIREKAAE 78
           + I   R  V + GC  N+YDS  +     + G E V+  +  +++V+NTC  I     E
Sbjct: 4   KSIKQNRINVVTLGCSKNIYDSEVLMGQLKASGKEVVHE-ETGNIVVINTCGFINNAKEE 62

Query: 79  KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPE 138
            + + L  I+     + +EG    V V GC+++    ++ +  P V+   G      LP 
Sbjct: 63  SINTILEYIQ-----KKEEGLVDKVFVMGCLSERYKPDLQKEIPNVDQYFGTT---ELPV 114

Query: 139 LLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
           LL       +V+  DY  E   ERL+     Y       A+L + EGCD+ C+FC +P  
Sbjct: 115 LL-------KVLGADYKHELIGERLTTTPKNY-------AYLKVSEGCDRLCSFCAIPLM 160

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258
           RG   S  +  ++ EA KL   GV E+ L+ Q++  + G  L G++ T ++LL +L++++
Sbjct: 161 RGRHKSTPIEDLIVEAEKLAKKGVKELILIAQDITYY-GLDLYGKR-TLANLLRALAKVE 218

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           G+  +R   + P      +++   +   +  YL +P+Q  +D ILKSM R  T     ++
Sbjct: 219 GIEWIRIHYAFPTGFPKDVLEVMKEESKICKYLDIPLQHIADPILKSMKRGTTQARTTRL 278

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           +   R   P+IA+ +  IVG+P ET++DF    + V ++ + +   F YS    T    +
Sbjct: 279 LQDFRKAIPEIALRTTLIVGYPNETEEDFELLKEFVRQMRFERLGCFTYSHEENTAAYEL 338

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPW---- 434
            + V E VK  R   + +   +     N A VG+    LI++  KE    VGR+ +    
Sbjct: 339 EDNVPEEVKQRRAAEIMEIQSQISWELNQAKVGKTFRCLIDR--KEGQYFVGRTEYDSPD 396

Query: 435 -LQSVVLNSKNH--NIGDIIKVRITDVKISTLYGELV 468
               V++++  H   IGD   + IT+     LYGE V
Sbjct: 397 VDNEVLIDAAKHYVKIGDFADILITEATDFDLYGEPV 433


>gi|254292968|ref|YP_003058991.1| ribosomal protein S12 methylthiotransferase [Hirschia baltica ATCC
           49814]
 gi|254041499|gb|ACT58294.1| MiaB-like tRNA modifying enzyme YliG [Hirschia baltica ATCC 49814]
          Length = 450

 Score =  168 bits (426), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 134/470 (28%), Positives = 222/470 (47%), Gaps = 61/470 (12%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           V  +  + S GC   + DS R+     ++GYE       A+L+++NTC   + A ++   
Sbjct: 11  VAPKIGIVSLGCPKALVDSERIITRLRAEGYEISGEYKGANLVLVNTCAFLDSARDESLE 70

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +G         ++E G   V+V GC+  AE E I  +   V  V GP  Y         
Sbjct: 71  AIGEA-------LEENG--RVIVTGCLG-AEPEVIEAQYSNVLAVTGPAQY--------- 111

Query: 143 ARFGKRVVDTDY----SVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
               ++V+D  +       + F+ L + + G        A+L I EGC   C+FC++P  
Sbjct: 112 ----EQVMDAVHKHCPQPPNAFQSL-VPESGIRLTPRHYAYLKISEGCSNRCSFCIIPSL 166

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTF 247
           RG   SR + QV+ EA +L   GV E+ ++ Q+ +A           W+ K  +     F
Sbjct: 167 RGDLASRPIDQVLREAEQLQKAGVNELLVISQDTSAYGMDIKYEPRTWKDKEYE---TRF 223

Query: 248 SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307
            DL   L ++    RL Y   +P       + A G +   +PYL +P Q  S  +L++M 
Sbjct: 224 LDLCQGLGDMGMWTRLHYVYPYPHVDKVIPLMAEGKI---LPYLDIPFQHASPNVLRNMK 280

Query: 308 RRHTAYEYRQIIDRIRSVR---PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
           R     +  ++++RI+  R   PDIAI S FIVGFPGETD+DF   MD + +    +A  
Sbjct: 281 R---PAKQDKVLERIKQWRIDVPDIAIRSTFIVGFPGETDEDFEMLMDFMREAKIDRAGC 337

Query: 365 FKYSPRLGTPGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKH 421
           FKY    G    ++   V E VK E   R + LQ+ +  ++   ++A +G++++++I+  
Sbjct: 338 FKYEDVKGAVSHDLPNHVPEEVKEERWHRFMQLQQDISHER---SEAQIGRVLDIIIDDS 394

Query: 422 GKEK--GKLVGRSPWLQSVVL--NSKNHNIGDIIKVRITDVKISTLYGEL 467
             E   G+    +P +  +V   N  +  +GDI+K  ITD     L+ ++
Sbjct: 395 NGEAAVGRTKADAPEIDGLVHLENYPDLEVGDIVKAEITDANCYDLWAKV 444


>gi|147902192|ref|NP_001084956.1| CDK5 regulatory subunit-associated protein 1-like 1 [Xenopus
           laevis]
 gi|82185344|sp|Q6NS26|CDKAL_XENLA RecName: Full=CDK5 regulatory subunit-associated protein 1-like 1
 gi|47122802|gb|AAH70521.1| MGC78779 protein [Xenopus laevis]
          Length = 556

 Score =  168 bits (426), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 127/457 (27%), Positives = 221/457 (48%), Gaps = 41/457 (8%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           Q+ +++++GC  N  D   M     + GY      + ADL +LN+C ++  A +    F 
Sbjct: 60  QKIWIRTWGCSHNNSDGEYMAGQLAAYGYSITEQPEKADLWLLNSCTVKSPAED---HFR 116

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             I+  + +  K      VVV+GCV QA+  +   +      ++G Q   R+ E++E   
Sbjct: 117 NSIKKAQEANKK------VVVSGCVPQAQPRQDYMKG---LSIIGVQQIDRVVEVVEETI 167

Query: 145 FGKRVVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            G  V       +D  +RL  + +D    RK  +   ++I  GC   CT+C   + RG  
Sbjct: 168 KGHSVRLLGQK-KDNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGEL 226

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-RGKGLDGEKCTFSDLLYSLSEI---- 257
            S  + ++VD A +    GVCEI L  ++  A+ R  G D        LL+ L E+    
Sbjct: 227 ASYPVEELVDRATQSFQEGVCEIWLTSEDTGAYGRDIGTD-----LPTLLWKLVEVIPEG 281

Query: 258 ----KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
                G+    Y   H  +M+  L     +   +  +LH+PVQS SD +L  M R +   
Sbjct: 282 AMLRLGMTNPPYILEHLEEMAKIL-----NHPRVYAFLHIPVQSASDSVLMDMKREYCIA 336

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
           ++++++D ++   P I I++D I GFPGETD+DF+ T+ LV++  +   F  ++ PR GT
Sbjct: 337 DFKRVVDFLKERVPGITIATDIICGFPGETDEDFKETLKLVEEYKFPSLFINQFYPRPGT 396

Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFN--DACVGQIIEVLIEKHGKEKGKLVGR 431
           P + M EQV  +VK  R     K+L +   S++  D  +GQ  +VL+ +   +    V  
Sbjct: 397 PAAKM-EQVLAHVKKRRT----KELSQLFHSYDPYDHKIGQKQQVLVTEESFDSQYYVAH 451

Query: 432 SPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           + + + V++      +G +++V+I +     + G+ V
Sbjct: 452 NRFYEQVLVPKDPDFMGKMVEVKIFEAGKHFMKGQPV 488


>gi|126741000|ref|ZP_01756683.1| MiaB-like tRNA modifying enzyme [Roseobacter sp. SK209-2-6]
 gi|126717926|gb|EBA14645.1| MiaB-like tRNA modifying enzyme [Roseobacter sp. SK209-2-6]
          Length = 420

 Score =  168 bits (426), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 128/448 (28%), Positives = 206/448 (45%), Gaps = 40/448 (8%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P +F   + GC++N Y++  M+++    G +        +L+V+NTC +  +A  K    
Sbjct: 3   PPKF--TTLGCRLNAYETEAMKELSQEAGLD--------NLVVVNTCAVTAEAVRKSRQE 52

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVV-----VGPQTYYRL-- 136
           + R+R       +E  +  +VV GC AQ E E       +  V+     +  +T+ ++  
Sbjct: 53  IRRLR-------RENPEAQIVVTGCAAQTEPESFAAMGEVDRVIGNNEKMQAETWQQIAK 105

Query: 137 -PELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
            P+ +      K  VD   SV +    L  +DG   R R   A++ +Q GCD  CTFC++
Sbjct: 106 GPDFIGETE--KIQVDDIMSVNETAGHL--IDGFGTRSR---AYVQVQNGCDHRCTFCII 158

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
           PY RG   S     V+D+ ++LID G  E+ L G ++ +W G  L         ++  L 
Sbjct: 159 PYGRGNSRSVPAGVVIDQIKRLIDKGYNEVVLTGVDLTSW-GADLPATPRLGDLVMRILR 217

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
            +  L RLR ++    +  + L++A      LMP+LHL +Q G D ILK M RRH   + 
Sbjct: 218 LVPDLPRLRISSIDSIEADENLMQAIATEPRLMPHLHLSLQHGDDLILKRMARRHLRDDA 277

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
               +  R +RPD+   +D I GFP ET+  F  ++ LV          F YS R GTP 
Sbjct: 278 IAFCEEARRLRPDMTFGADIIAGFPTETEAHFENSLKLVTDCDLTWLHVFPYSKREGTPA 337

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWL 435
           + +  QV+  +  ER   L+     Q      A +G+   +L+E         +GR+   
Sbjct: 338 AKIPNQVNGKLIKERAARLRAAGEAQTQRHLQAQLGKTHHILMEN------PHMGRTEQF 391

Query: 436 QSVVLNSKNHNIGDIIKVRITDVKISTL 463
             V   +     G+I+   I+  K S L
Sbjct: 392 TEVSFTTPQTE-GEIVMATISGSKGSQL 418


>gi|45361233|ref|NP_989194.1| CDK5 regulatory subunit-associated protein 1-like 1 [Xenopus
           (Silurana) tropicalis]
 gi|82186429|sp|Q6P4Y0|CDKAL_XENTR RecName: Full=CDK5 regulatory subunit-associated protein 1-like 1
 gi|38649005|gb|AAH63205.1| CDK5 regulatory subunit associated protein 1-like 1 [Xenopus
           (Silurana) tropicalis]
          Length = 553

 Score =  168 bits (426), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 126/456 (27%), Positives = 219/456 (48%), Gaps = 39/456 (8%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           Q+ +++++GC  N  D   M     + GY      + ADL +LN+C ++  A +    F 
Sbjct: 60  QKIWIRTWGCSHNNSDGEYMAGQLAAYGYSITEQPEQADLWLLNSCTVKSPAED---HFR 116

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG-EEILRRSPIVNVVVGPQTYYRLPELLERA 143
             I+  + +  K      VV++GCV QA+  +E ++   I+ V    Q   R+ E++E  
Sbjct: 117 NSIKKAQEANKK------VVLSGCVPQAQPRQEYMKGLSIIGV----QQIDRVVEVVEET 166

Query: 144 RFGKRVVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
             G  V       +D  +RL  + +D    RK  +   ++I  GC   CT+C   + RG 
Sbjct: 167 IKGHSVRLLGQK-KDNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGE 225

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-RGKGLDGEKCTFSDLLYSLSEI--- 257
             S  + ++VD A +    GVCEI L  ++  A+ R  G D        LL+ L E+   
Sbjct: 226 LASYPVEELVDRAAQSFQEGVCEIWLTSEDTGAYGRDIGTD-----LPTLLWKLVEVIPE 280

Query: 258 -----KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
                 G+    Y   H  +M+  L     +   +  +LH+PVQS SD +L  M R +  
Sbjct: 281 GAMLRLGMTNPPYILEHLEEMAKIL-----NHPRVYAFLHIPVQSASDSVLMDMKREYCI 335

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
            ++++++D ++   P I I++D I GFPGETD+DF+ T+ LV++  +   F  ++ PR G
Sbjct: 336 ADFKRVVDFLKERVPGITIATDIICGFPGETDEDFKETLKLVEEYKFPSLFINQFYPRPG 395

Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS 432
           TP + M EQV  +VK +R   L +       S  D  +G+   VL+ +   +    V  +
Sbjct: 396 TPAAKM-EQVPAHVKKQRTKELSQLF--HSYSPYDHKIGEEQHVLVTEESFDSQYYVSHN 452

Query: 433 PWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            + + V++      +G +++V+I +     + G+ V
Sbjct: 453 RFYEQVLVPKDPAFVGKMVEVKIFEAGKHFMKGQPV 488


>gi|255994244|ref|ZP_05427379.1| RNA modification enzyme, MiaB family [Eubacterium saphenum ATCC
           49989]
 gi|255993912|gb|EEU04001.1| RNA modification enzyme, MiaB family [Eubacterium saphenum ATCC
           49989]
          Length = 451

 Score =  168 bits (426), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 135/463 (29%), Positives = 227/463 (49%), Gaps = 36/463 (7%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC-HIREKAAEKVYSFL 84
           + F+++ GC  N  DS      FFS G+++ +S+ DAD++V+NTC  I +   E + +  
Sbjct: 2   KIFIETLGCPKNFNDSEYAYGSFFSAGFKKADSISDADVVVVNTCGFIHDAKVESIDAIF 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE-RA 143
              +  K+S I       +VV+GC++Q   EE+ +  P V++  G   Y+ LPE+ + R 
Sbjct: 62  DAAQKKKSSAI-------LVVSGCLSQRYMEELKKEMPEVDIFAGVNDYFNLPEICKKRL 114

Query: 144 RFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
             GK    V T    ++ F         +      +  + I EGC+  C FC++P  RG 
Sbjct: 115 NDGKSKGAVLTKSPQKNDFPEPG--SRAFENVNNNSYTIKISEGCNNKCAFCIIPSIRGS 172

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
             SR +  +V EA  L+  G  EI L+GQ+V A+ G     E  T + LL  +S+I+G  
Sbjct: 173 FRSRYIQDIVKEAEFLVTLGAKEIILIGQDVTAF-GTDRRNED-TLALLLREVSKIEGEF 230

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
            +R    +   ++D LI        +  Y+ +P+Q  SD +L +M R     +   II+R
Sbjct: 231 WIRLMYCYDNKITDELIAEIMRNKKVCKYIDMPIQHISDNVLSAMRR---GSDSDLIIER 287

Query: 322 IRSVRP---DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           IR++R    DI I +  I GFPGE+++DF    + V +  + +   F YS   GT  +  
Sbjct: 288 IRALRSNIDDIHIRTTLITGFPGESEEDFNKLYEFVKEQEFDRLGVFSYSEEEGTAAAK- 346

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI------EKHGKEKGKLVGRS 432
            +Q+ + ++ +R   + +   E   + N   VG+ ++VLI      E+ G E+  L+GR+
Sbjct: 347 CKQIPDEIREQRRDSIMRLQSEISKNKNKMMVGKTMKVLIDGVIEGEQSGSER-MLIGRT 405

Query: 433 ----PWLQSVVLNSK---NHNIGDIIKVRITDVKISTLYGELV 468
               P + + V+        ++G+   V IT      +YGE V
Sbjct: 406 EFDAPEIDNCVIFKPAICGKDVGEFTYVHITGSSEYDVYGEEV 448


>gi|66044640|ref|YP_234481.1| ribosomal protein S12 methylthiotransferase [Pseudomonas syringae
           pv. syringae B728a]
 gi|75502967|sp|Q4ZWM9|RIMO_PSEU2 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|63255347|gb|AAY36443.1| Protein of unknown function UPF0004:Conserved hypothetical protein
           1125 [Pseudomonas syringae pv. syringae B728a]
          Length = 447

 Score =  168 bits (426), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 146/474 (30%), Positives = 235/474 (49%), Gaps = 65/474 (13%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  FV S GC   + DS R+      +GYE V + +DAD++V+NTC   + A  +    
Sbjct: 10  PKVGFV-SLGCPKALVDSERILTQLRMEGYEVVATYEDADVVVVNTCGFIDTAKAESLEV 68

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G         IKE G   V+V GC+   +   I    P V  V GPQ Y          
Sbjct: 69  IGE-------AIKENGK--VIVTGCMG-VDASVIRNVHPSVLSVTGPQQY---------- 108

Query: 144 RFGKRVVDTDYSV----EDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
              ++VV+  + V    +D    + +V   G        A+L I EGC+  C+FC++P  
Sbjct: 109 ---EQVVNAVHDVVPPRKDHNPLIDLVPPQGVKLTPRHYAYLKISEGCNHSCSFCIIPSM 165

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA------WRGKGLDGE--KCTFSDL 250
           RG  +SR +  V+DEA++L+ +GV E+ ++ Q+ +A      +R    DG+  K   ++L
Sbjct: 166 RGKLVSRPVGDVLDEAKRLVKSGVKELLVISQDTSAYGVDVKYRTGFWDGQPVKTRMTEL 225

Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
             +L  +   VRL Y   +P       + A G    ++PYL +P Q  S +ILK M R  
Sbjct: 226 CQALGSMGVWVRLHYVYPYPHVDELIPLMAAGK---ILPYLDIPFQHASPKILKLMKR-- 280

Query: 311 TAYEYRQIIDRIRSVR---PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
            A+E + +  RI++ R   PD+ I S FIVGFPGET++DF+  +D + +    +   F+Y
Sbjct: 281 PAFEDKTLA-RIKNWREQCPDLIIRSTFIVGFPGETEEDFQYLLDWLTEAQLDRVGCFQY 339

Query: 368 SPRLGTPGSNMLEQ--VDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422
           SP  G P +N+L+   V ++VK    +R +  Q+ +   ++      +G+ IEVLI++  
Sbjct: 340 SPVEGAP-ANLLDAAIVPDDVKQDRWDRFMAHQQAISAARLQMK---IGKEIEVLIDEV- 394

Query: 423 KEKGKLVGR----SPWLQSVVL----NSKNHNIGDIIKVRITDVKISTLYGELV 468
            ++G  VGR    +P +   V     +      GD I  R+TD     L+ E++
Sbjct: 395 DDRGA-VGRCFFDAPEIDGNVFIGLDDGSTVQPGDKIMCRVTDADEYDLWAEML 447


>gi|322823384|gb|EFZ29150.1| tRNA modification enzyme, putative [Trypanosoma cruzi]
          Length = 530

 Score =  168 bits (426), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 126/452 (27%), Positives = 221/452 (48%), Gaps = 33/452 (7%)

Query: 28  FVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRI 87
           F+ ++GC  NV D   M  +    GY   +  +DAD+ +LN+C ++  + E   S + R+
Sbjct: 52  FIHTFGCSHNVSDGEYMAGLLAQAGYRVTDVFNDADVYLLNSCTVKNPSEEHFISMMNRV 111

Query: 88  RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNV-VVGPQTYYRLPELLERARFG 146
           R         G  L  VVAGCV QA+     R +   +V V+G +   R+ E++  A  G
Sbjct: 112 R-------ATGKPL--VVAGCVPQADP----RNTQWDDVSVIGVRNIDRVGEVIHEALQG 158

Query: 147 K--RVVDTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
              R++  +    +K  F +L  +D    R+      + I  GC   CT+C     RG  
Sbjct: 159 HCVRLIGVNEHANNKQDFNKLPPLDLPKIRRNRFIEIIPISVGCLNHCTYCKTKQARGDL 218

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL-V 261
            S  +  +V   R ++  GV EI +  ++V A+   G+D +      L   + EI+G  V
Sbjct: 219 RSWPIESIVLRVRSVLKEGVKEIRITSEDVGAY---GIDIKTDIVCLLRAIVKEIQGTEV 275

Query: 262 RLRYTTSHP----RDMSD-CLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
            +R   S+P    R + D   I  H ++     ++H+P+QSGS+RIL +M R +T  E+ 
Sbjct: 276 MMRVGMSNPPYLLRHLDDFAAILRHPNV---YEFVHIPIQSGSNRILNAMQREYTLEEFH 332

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
           + + RIRSV P++ +++D I  FPGE + ++R TM+L D + +      ++ PR  TP +
Sbjct: 333 ECVHRIRSVVPNVTLATDIICAFPGEGEAEWRETMELCDHVRFPVLNITRFYPRRNTPAA 392

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQ 436
           +M +Q+  +V   R   L +     +    D  VG++  V + +   +K  LVG +    
Sbjct: 393 SM-KQIPTDVAKRRTSELTEFFNSYRTL--DHMVGEVHSVALLETAHDKHHLVGHTKAYV 449

Query: 437 SVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            V+++ +   +G+ + V I      ++ G ++
Sbjct: 450 QVLVDPQEARLGETVTVVIMSTTKYSVVGRVL 481


>gi|260431873|ref|ZP_05785844.1| conserved hypothetical protein [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260415701|gb|EEX08960.1| conserved hypothetical protein [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 418

 Score =  168 bits (426), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 128/439 (29%), Positives = 203/439 (46%), Gaps = 38/439 (8%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P +F   + GC++N Y++  M+++    G          D +++NTC +  +A  K    
Sbjct: 3   PPKF--TTLGCRLNAYETEAMKELSQQAGL--------TDAVIVNTCAVTAEAVRKARQE 52

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE-- 141
           + ++R       +E  +  ++V GC AQ E +        V+ V+G     R PE  +  
Sbjct: 53  IRKLR-------RENPNARLIVTGCAAQTEPQTFADMDE-VDAVIGNTEKMR-PETWKGM 103

Query: 142 RARFGKRV----VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197
            A F        VD   SV +    L  +DG   R R   A++ +Q GCD  CTFC++PY
Sbjct: 104 AADFIGETEAVQVDDIMSVTETAGHL--IDGFGTRSR---AYVQVQNGCDHRCTFCIIPY 158

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257
            RG   S     VVD+ ++L+D G  E+ L G ++ +W G  L         ++  L  +
Sbjct: 159 GRGNSRSVPAGVVVDQIKRLVDRGYNEVVLTGVDLTSW-GADLPASPKLGDLVMRILKLV 217

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
             L RLR ++    ++ + L++A      LMP+LHL +Q G D ILK M RRH   +  +
Sbjct: 218 PDLPRLRISSIDSIEVDENLMQAIATEPRLMPHLHLSLQHGDDLILKRMKRRHLRDDAIR 277

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
             +  R +RP+I   +D I GFP ET+  F  ++ LV          F YS R GTP + 
Sbjct: 278 FTEEARKLRPEITFGADIIAGFPTETEAHFENSLKLVTDCDLTWLHVFPYSKREGTPAAR 337

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQS 437
           + +QV+  V  ER   L++    Q      A +G+   +L+E         +GR+     
Sbjct: 338 IPQQVNGKVIKERAARLREAGDAQVARHLAAQLGKTHHILMEN------PHMGRTEQFTE 391

Query: 438 VVLNSKNHNIGDIIKVRIT 456
           V   +     G I+  RIT
Sbjct: 392 VTFATPQPE-GQIVTARIT 409


>gi|332885636|gb|EGK05882.1| MiaB-like tRNA modifying enzyme [Dysgonomonas mossii DSM 22836]
          Length = 436

 Score =  168 bits (425), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 127/427 (29%), Positives = 203/427 (47%), Gaps = 17/427 (3%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N  ++  +       G  R    + AD+ V+NTC + E A +K        R  
Sbjct: 16  TLGCKLNFAETSAIGRQLSQVGVRRSRDGEVADICVINTCSVTEFADKKC-------RQA 68

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               IKE     V+V GC AQ + E+I     +  V+   Q    +  L E  +  K VV
Sbjct: 69  VRKMIKENPGAYVIVTGCYAQLKPEDIAGIKGVDIVLGSEQKLDVVAYLDELKKKDKGVV 128

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
            T  S  +K +         +R R    FL +Q+GCD FC+FC +P+ RG   + S+  +
Sbjct: 129 HT--SKTNKIKSFVPSCSQDDRTR---YFLKVQDGCDYFCSFCTIPFARGRSRNGSIESM 183

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270
           V +A+++ + G  EI L G N+  + G+   GE  TF DL+ +L E++G+ R R ++  P
Sbjct: 184 VQQAKEVAEKGGKEIVLTGVNIGDF-GR-TTGE--TFFDLVKALDEVEGIERYRISSIEP 239

Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330
             ++D +I+         P+ H+P+QSGSD +LK M RR+    +R  +++I+SV PD  
Sbjct: 240 NLLTDEIIQFVAQSKRFAPHFHIPLQSGSDAVLKLMRRRYDTALFRHKVEKIKSVMPDAF 299

Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER 390
           I  D IVG  GETD+ F      ++ + ++Q   F YS R  T    +  +VD   K  R
Sbjct: 300 IGVDVIVGTRGETDEYFDEAKAFLESLDFSQLHVFTYSERPNTQALKIDHEVDPKTKHAR 359

Query: 391 LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDI 450
              L     E+  +F  +  G   +VL E H +    + G +     V      H   +I
Sbjct: 360 CKALLDLSDEKLQAFYRSQQGTKRKVLFE-HTQHDSVMYGFTENYIKVETQYHAHKANEI 418

Query: 451 IKVRITD 457
             + + D
Sbjct: 419 KMITLGD 425


>gi|313206227|ref|YP_004045404.1| SSU ribosomal protein s12p methylthiotransferase [Riemerella
           anatipestifer DSM 15868]
 gi|312445543|gb|ADQ81898.1| SSU ribosomal protein S12P methylthiotransferase [Riemerella
           anatipestifer DSM 15868]
 gi|315023087|gb|EFT36100.1| possible 2-methylthioadenine synthetase [Riemerella anatipestifer
           RA-YM]
 gi|325336326|gb|ADZ12600.1| 2-methylthioadenine synthetase [Riemerella anatipestifer RA-GD]
          Length = 434

 Score =  168 bits (425), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 128/456 (28%), Positives = 225/456 (49%), Gaps = 42/456 (9%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEK-VYSF 83
           ++  V + GC  N+YDS  +     + G E V+  +  D++V+NTC   + A E+ + + 
Sbjct: 9   KKINVVTLGCSKNLYDSEVLMGQLKANGKEVVHEQERGDIVVINTCGFIDNAKEESINTI 68

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           L  +       +++     V V GC+++    ++L+  P V+   G +    LP LL+  
Sbjct: 69  LDYVEAKNRGEVEQ-----VFVTGCLSERYKPDLLKEIPDVDQYFGTRD---LPILLKH- 119

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
                 +  DY  E   ERL+     Y       A+L I EGCD+ C+FC +P  RG  +
Sbjct: 120 ------LGADYKHELVGERLTTTPKHY-------AYLKISEGCDRPCSFCAIPLMRGGHV 166

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVR 262
           S  + ++V+EA+KL   G  E+ L+ Q++  +   GLD  +K    DLL  L ++ G+  
Sbjct: 167 STPIEKLVEEAKKLAKKGTKELILIAQDLTYY---GLDIYKKRALGDLLKELVKVDGIEW 223

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R   + P    + ++    +   +  Y+ +P+Q  +  +LKSM R  T  +   ++++ 
Sbjct: 224 IRLHYAFPTGFPEEVLDIIREESKVCNYIDIPLQHINTDLLKSMKRGTTHEKTNALLNKF 283

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R   P++A+ +  IVG+PGET++ F+   + V +  + +   F YS    T    + + V
Sbjct: 284 REKVPNMAVRTTLIVGYPGETEERFQELKNWVKEQRFDRLGCFTYSHEENTTAYQLEDDV 343

Query: 383 DENVK---AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWL 435
            + VK    E ++ LQ ++  ++   N   VGQ+   + ++  KE    VGR    SP +
Sbjct: 344 PQEVKEAREEEIMALQSQISWEK---NQEKVGQVFRCIFDR--KEGNYFVGRTEFDSPDV 398

Query: 436 QSVVLNSKNH---NIGDIIKVRITDVKISTLYGELV 468
            + VL S  +   +IG+   VRIT  +   LYGELV
Sbjct: 399 DNTVLVSAENTYISIGEFANVRITSAEEYDLYGELV 434


>gi|260591614|ref|ZP_05857072.1| Fe-S oxidoreductase [Prevotella veroralis F0319]
 gi|260536414|gb|EEX19031.1| Fe-S oxidoreductase [Prevotella veroralis F0319]
          Length = 454

 Score =  168 bits (425), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 118/404 (29%), Positives = 191/404 (47%), Gaps = 23/404 (5%)

Query: 33  GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92
           GC++N  ++       ++ G       + AD+ ++NTC + E A  K    + R+     
Sbjct: 18  GCKLNFSETSTFARTLYNMGVREAKKSESADICLINTCSVTEVADHKCRQIIHRM----- 72

Query: 93  SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDT 152
             +++     V+V GC AQ E E I +    V++V+G      L + L  A + K  VD+
Sbjct: 73  --VRQNPGAFVIVTGCYAQLESETIAKIEG-VDLVLGSNEKADLIQYLSDA-WNKTDVDS 128

Query: 153 --DYSVED--------KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
             D   E+        K + +       +R      FL +Q+GC+ FCT+C +PY RG  
Sbjct: 129 IGDNPTEEGKGQYHSVKTKDIKSFQASCSRGNRTRYFLKVQDGCNYFCTYCTIPYARGFS 188

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            + S++ +V +A +    G  EI L G N+  +      GE+  F DL+ +L +++G+ R
Sbjct: 189 RNPSIASLVQQAEEAAKEGGKEIVLTGVNIGDF--GETTGER--FLDLVKALDKVEGIER 244

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
            R ++  P  + D LI+        MP+ H+P+QSGSD +LK M+RR+    +   I+ I
Sbjct: 245 FRISSLEPDLIDDDLIEYCAQSRAFMPHFHIPLQSGSDEVLKLMHRRYDTKLFAHKINLI 304

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           +   PD  I  D +VG  GE  + F    + +  +   Q   F YS R GT   ++   V
Sbjct: 305 KEKMPDAFIGVDVMVGSRGERPEYFEDCYNFLASLPVTQLHVFPYSERPGTSALSIPYVV 364

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG 426
           D   K  R   L K   E+  +F  A +GQ  +VL EK  + K 
Sbjct: 365 DNREKKHRAHKLLKLSDEKTHAFYAAHIGQEADVLFEKAARGKA 408


>gi|213969167|ref|ZP_03397306.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato T1]
 gi|301383939|ref|ZP_07232357.1| ribosomal protein S12 methylthiotransferase [Pseudomonas syringae
           pv. tomato Max13]
 gi|302064176|ref|ZP_07255717.1| ribosomal protein S12 methylthiotransferase [Pseudomonas syringae
           pv. tomato K40]
 gi|302134739|ref|ZP_07260729.1| ribosomal protein S12 methylthiotransferase [Pseudomonas syringae
           pv. tomato NCPPB 1108]
 gi|213926165|gb|EEB59721.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato T1]
 gi|330872676|gb|EGH06825.1| ribosomal protein S12 methylthiotransferase [Pseudomonas syringae
           pv. morsprunorum str. M302280PT]
 gi|330967890|gb|EGH68150.1| ribosomal protein S12 methylthiotransferase [Pseudomonas syringae
           pv. actinidiae str. M302091]
 gi|331016417|gb|EGH96473.1| ribosomal protein S12 methylthiotransferase [Pseudomonas syringae
           pv. lachrymans str. M302278PT]
          Length = 447

 Score =  168 bits (425), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 146/474 (30%), Positives = 235/474 (49%), Gaps = 65/474 (13%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  FV S GC   + DS R+      +GYE V + +DAD++V+NTC   + A  +    
Sbjct: 10  PKVGFV-SLGCPKALVDSERILTQLRMEGYEVVATYEDADVVVVNTCGFIDTAKAESLEV 68

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G         IKE G   V+V GC+   +   I    P V  V GPQ Y          
Sbjct: 69  IGE-------AIKENGK--VIVTGCMG-VDASVIRAVHPSVLSVTGPQQY---------- 108

Query: 144 RFGKRVVDTDYSV----EDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
              ++VV+  + V    +D    + +V   G        A+L I EGC+  C+FC++P  
Sbjct: 109 ---EQVVNAVHDVVPPRKDHNPLIDLVPPQGVKLTPRHYAYLKISEGCNHSCSFCIIPSM 165

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA------WRGKGLDGE--KCTFSDL 250
           RG  +SR +  V+DEA++L+ +GV E+ ++ Q+ +A      +R    DG+  K   ++L
Sbjct: 166 RGKLVSRPVGDVLDEAKRLVKSGVKELLVISQDTSAYGVDVKYRTGFWDGQPVKTRMTEL 225

Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
             +L  +   VRL Y   +P       + A G    ++PYL +P Q  S +ILK M R  
Sbjct: 226 CQALGSMGVWVRLHYVYPYPHVDELIPLMAAGK---ILPYLDIPFQHASPKILKLMKR-- 280

Query: 311 TAYEYRQIIDRIRSVR---PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
            A+E + +  RI++ R   PD+ I S FIVGFPGET++DF+  +D + +    +   F+Y
Sbjct: 281 PAFEDKTLA-RIKNWREQCPDLIIRSTFIVGFPGETEEDFQYLLDWLTEAQLDRVGCFQY 339

Query: 368 SPRLGTPGSNMLEQ--VDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422
           SP  G P +N+L+   V ++VK    +R +  Q+ +   ++      +G+ IEVLI++  
Sbjct: 340 SPVEGAP-ANLLDAAIVPDDVKQDRWDRFMAHQQAISAARLQMK---IGKEIEVLIDEV- 394

Query: 423 KEKGKLVGR----SPWLQSVVL----NSKNHNIGDIIKVRITDVKISTLYGELV 468
            ++G  VGR    +P +   V     +      GD I  R+TD     L+ E++
Sbjct: 395 DDRGA-VGRCFFDAPEIDGNVFIGLEDGSTVQPGDKIMCRVTDADEYDLWAEML 447


>gi|149193779|ref|ZP_01870877.1| MiaB-like tRNA modifying enzyme [Caminibacter mediatlanticus TB-2]
 gi|149135732|gb|EDM24210.1| MiaB-like tRNA modifying enzyme [Caminibacter mediatlanticus TB-2]
          Length = 405

 Score =  168 bits (425), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 107/380 (28%), Positives = 197/380 (51%), Gaps = 32/380 (8%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + F K++GC+ N++D+  M+++   +  + V + +DAD+I++N+C +   A   + S++ 
Sbjct: 2   KVFFKTFGCRSNIFDTEIMKNIL-KEKVDIVKNENDADIIIVNSCTVTNFADRDIRSYVN 60

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           +  N K           ++  GC A  +GE++ + S + NV+ G +    + + L+    
Sbjct: 61  KFSNKK-----------IIFTGCGAYTQGEKLFKESKVFNVL-GHKFKEEIDKFLDFK-- 106

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G  + D D+  +   E                AF+ IQEGCD  C +C++P  RG   S 
Sbjct: 107 GINLGDFDFVNKKIVESFD----------KTKAFIKIQEGCDFECAYCIIPKVRGSSRSI 156

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
             S +++E +KL DNG+ E  L G N+ ++ GK  +    + S L+  +S I+G+ R+R 
Sbjct: 157 EESLILEEIKKLRDNGISEFVLTGINMGSY-GKDTN---TSLSKLIEKISNIRGVKRIRL 212

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
            +  P  + D LI+   +  +L  +LH+ +Q  SD++L+ M RR+       + +R+ S+
Sbjct: 213 GSLEPSQIDDRLIELTQN-GILEKHLHIALQHTSDKMLRIMKRRNRVSSTLPLFERLASM 271

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
             +IA+ +DFIVG PGE+++ F   +    K        F+YSPR GT  + M + V  +
Sbjct: 272 --NIALGTDFIVGHPGESEEIFNEALSNFKKYPLTHIHLFRYSPREGTLSATMKQDVKGD 329

Query: 386 VKAERLLCLQKKLREQQVSF 405
           V  +R   L++ +++    F
Sbjct: 330 VSKKRAKILEEIVKKNNYEF 349


>gi|119871859|ref|YP_929866.1| RNA modification protein [Pyrobaculum islandicum DSM 4184]
 gi|119673267|gb|ABL87523.1| RNA modification enzyme, MiaB family [Pyrobaculum islandicum DSM
           4184]
          Length = 415

 Score =  168 bits (425), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 146/459 (31%), Positives = 221/459 (48%), Gaps = 62/459 (13%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R +V++YGC +   D+   E +    GYE+V+++D+AD+I++ TC +RE    +    L 
Sbjct: 3   RIYVETYGCWLAKADA---EILRQRLGYEQVSNVDEADVILVYTCAVREDGEVRQ---LA 56

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           RIR L    +K G +L  +VAGC+A        R  P     + P      P  +E  + 
Sbjct: 57  RIREL----VKLGKEL--IVAGCLA--------RLRPYTIKSLAPHAKLIYPSEIEGGK- 101

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR---GIE 202
                +       K+E            RG+   + +Q GC   CTFC   YTR   G  
Sbjct: 102 -----ERSMKTLPKYE------------RGLIYTVPLQVGCLGNCTFCATKYTRGGAGYV 144

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNV------NAWRGKGLDGEKCTFSDLLYS-LS 255
            S     VV   ++ +  G  EI L GQ+V        WRG        T  DLL   L 
Sbjct: 145 KSADPDDVVRHIKEAVAKGAREIYLTGQDVITYGFDAGWRG------GWTLPDLLDRILK 198

Query: 256 EIKGLVRLRYTTSHP---RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
           E++G  R+R   S P       D L+        +  Y HLPVQSGSD++L +M R++T 
Sbjct: 199 EVEGEYRVRIGMSEPWIFEKFVDQLLDIIKRDHRVYRYFHLPVQSGSDKVLVAMGRKYTV 258

Query: 313 YEYRQIIDRIRSVRPD-IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
            EYR +I RIR    D + I++D IVGFPGET++DF+ T+ LV+++ + +    ++SPR 
Sbjct: 259 EEYRGLIRRIRRELGDNVFIATDIIVGFPGETEEDFQETVKLVEELQFDKIHVARFSPRP 318

Query: 372 GTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR 431
            T  + M  QV +  K  R   L +         N A VG+   VLI++   + G +VGR
Sbjct: 319 FTEAAVMPRQVPDAEKKRRSKILSEVAMRIAHLRNGAQVGKRDVVLIDE--VDHGLVVGR 376

Query: 432 SPWLQSVVL--NSKNHNIGDIIKVRITDVKISTLYGELV 468
           +   + VV+   + +  +G+ + VRI       LYGE++
Sbjct: 377 ASDYRQVVVKRGAGDGLLGEFVNVRIAAASPVYLYGEIL 415


>gi|291395737|ref|XP_002714277.1| PREDICTED: CDK5 regulatory subunit associated protein 1-like 1
           [Oryctolagus cuniculus]
          Length = 571

 Score =  168 bits (425), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 127/457 (27%), Positives = 221/457 (48%), Gaps = 41/457 (8%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           Q+ +++++GC  N  D   M     + GY+   +  DADL +LN+C ++  A +    F 
Sbjct: 63  QKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAED---HFR 119

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             I+  +    K      VV+AGCV QA+  +   +      V+G Q   R+ E++E   
Sbjct: 120 NSIKKAQEENKK------VVLAGCVPQAQPRQDYLKG---LSVIGVQQIDRVVEVVEETI 170

Query: 145 FGKRVVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            G  V       E+   RL  + +D    RK  +   ++I  GC   CT+C   + RG  
Sbjct: 171 KGHSVRLLGQKKENG-RRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNL 229

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-RGKGLDGEKCTFSDLLYSLSEI---- 257
            S  + ++VD A++    GVCEI L  ++  A+ R  G D        LL+ L ++    
Sbjct: 230 ASYPIDELVDRAKQSFQEGVCEIWLTSEDTGAYGRDIGTD-----LPTLLWKLVDVIPEG 284

Query: 258 ----KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
                G+    Y   H ++M+  L     +   +  +LH+PVQS SD +L +M R +   
Sbjct: 285 AMLRLGMTNPPYILEHLQEMAKIL-----NHPRVYAFLHIPVQSASDSVLMAMKREYCVA 339

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
           +++ ++D ++   P I I++D I GFPGETD DF+ T+ LV++  +   F  ++ PR GT
Sbjct: 340 DFKSVVDFLKEKVPGITIATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGT 399

Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFN--DACVGQIIEVLIEKHGKEKGKLVGR 431
           P + M EQV  ++K +R     K L +   S+N  D  +G+  +VL+ +   +    V  
Sbjct: 400 PAAKM-EQVPAHMKKQRT----KDLSQVFHSYNPYDHKIGERQQVLVTEESFDSKFYVAH 454

Query: 432 SPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           + + + V++      +G +++V I +     + G+ V
Sbjct: 455 NRFYEQVLVPKNPAFMGKMVEVDIYESGKHFMKGQPV 491


>gi|254797123|ref|YP_003081961.1| hypothetical protein NRI_0751 [Neorickettsia risticii str.
           Illinois]
 gi|254590369|gb|ACT69731.1| conserved hypothetical protein [Neorickettsia risticii str.
           Illinois]
          Length = 416

 Score =  168 bits (425), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 129/428 (30%), Positives = 207/428 (48%), Gaps = 29/428 (6%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V ++GC++N Y+S  ++++        V   D  + I++NTC +  +A  KV     +IR
Sbjct: 4   VITFGCRLNFYESDLIKNL--------VGIRDSRECIIINTCAVTNEAVRKVKQ---KIR 52

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
                  KE  +  ++V GC  Q +        P V  V+G     ++       +    
Sbjct: 53  KCH----KEEPEKKIIVVGCGPQLD-PHAYSHMPGVFKVLGNIEKLKVESYTSEQKIA-- 105

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           V D  ++ E  F    +      RKR   AFL IQ GCD  CTFC +   RG   S    
Sbjct: 106 VADITHAPETAFSGTMMPVVSTVRKR---AFLEIQNGCDHDCTFCAITLARGKNRSSDAI 162

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
           ++V E RK++  G+ E+ L G ++  + GK L G+      L   L+++  L RLR ++ 
Sbjct: 163 KIVSEVRKMVAFGINEVVLTGVDITDY-GKDLFGKPALVYLLKKILNDVPELKRLRLSSV 221

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
              ++SD  I+       LMP+LHL +QSG   ILK M RRHT  +  +   +I +VRP+
Sbjct: 222 DVSELSDDFIELFATEARLMPHLHLSIQSGDSIILKRMKRRHTPEQVVEFHSKILAVRPE 281

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
               +D IVGFP E+++ F  + +L+ ++       F +SP+ GT  + ++ QV+  VK 
Sbjct: 282 TGFGADIIVGFPTESEEMFHNSYELIKRLAIPYLHVFPFSPKKGTKAA-LMPQVEGVVKK 340

Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIG 448
            R   L +  +E    FN   VG+I  +++E+        VGRS     V L+    +  
Sbjct: 341 RRARKLIELGKENLQIFNTVQVGRIHNLVLERDD------VGRSENFCLVKLDRAVSDDT 394

Query: 449 DIIKVRIT 456
            II+V+IT
Sbjct: 395 GIIRVKIT 402


>gi|225164430|ref|ZP_03726689.1| 2-alkenal reductase [Opitutaceae bacterium TAV2]
 gi|224800953|gb|EEG19290.1| 2-alkenal reductase [Opitutaceae bacterium TAV2]
          Length = 473

 Score =  168 bits (425), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 128/447 (28%), Positives = 214/447 (47%), Gaps = 31/447 (6%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL---GRI 87
           S GC  N+ DS  M       G   V   D AD++++NTC   + + E+  + +    + 
Sbjct: 11  SLGCAKNLVDSEIMIGHLHQAGMSVVPETDQADVVIVNTCSFIDSSKEESINHILAAHQA 70

Query: 88  RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA---R 144
           R L   R ++     ++VAGC++Q   +E+    P V+  +G      +  ++E     +
Sbjct: 71  RGLSKRRKEQK----LIVAGCMSQRFSKELPAAMPEVDAFIGLDQLTGIAPIIEEITGRK 126

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNR-KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            GK+    ++ +E +   +   D    R     TA++ I EGC+  C FC++P  RG   
Sbjct: 127 RGKKDAPANF-IEGRSTYIPDYDTPRFRLTPKHTAYIKIAEGCNHPCAFCIIPQIRGRHR 185

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQN-----VNAWRGKG-----LDGEKCT-FSDLLY 252
           SRS+  VV EAR+L+  GV E+ L+ Q+     ++ W  +      +D  + T  + LL 
Sbjct: 186 SRSVESVVAEARRLVAEGVKELNLISQDTTYFGMDTWEQRPNPRSPVDSSRGTALTTLLR 245

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
            L+ I+G   +R   +HP   SD LI+       +  Y+ +P+Q  SD +L  M R  + 
Sbjct: 246 ELNAIEGDFWIRLLYTHPAHWSDELIRTIAACPKVARYIDIPLQHISDHMLGLMQRETSG 305

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
              R +I RIR+  P IA+ + FIVGFPGET DD       +    + +   F+YS   G
Sbjct: 306 AYIRDLIARIRAGIPGIAVRTTFIVGFPGETPDDVEELCHFIRDTQFERLGVFRYSQEEG 365

Query: 373 TPGSNMLEQVDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV 429
           T  + M+ Q+    K  R    + LQK++  Q    ++  VG+ + VL+E+ G  +G+  
Sbjct: 366 TKAARMVGQLSFKAKDARWHQTMSLQKEIAAQ---VSERYVGRTLRVLVEEPGIARGE-- 420

Query: 430 GRSPWLQSVVLNSKNHNIGDIIKVRIT 456
             +P +   V   +   +G+   V IT
Sbjct: 421 ADAPDIDGRVYVPRELPVGEFADVTIT 447


>gi|257063782|ref|YP_003143454.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Slackia
           heliotrinireducens DSM 20476]
 gi|256791435|gb|ACV22105.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Slackia
           heliotrinireducens DSM 20476]
          Length = 446

 Score =  168 bits (425), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 123/449 (27%), Positives = 217/449 (48%), Gaps = 25/449 (5%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           +P   F+ + GC  N  DS  M+    S G+  V+  +DAD +++NTC   + A E+   
Sbjct: 18  IPSVNFI-TLGCAKNEVDSADMQRRLVSAGFAIVDDAEDADAVIVNTCSFIQAAIEESID 76

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +  +  L N  I +G   L+V AGC+    G+++       +  V       + E+++R
Sbjct: 77  VILEVAGLAN--IADGSSKLIV-AGCMPARFGDDLESELNEASAFVPCSKEDDIVEVVQR 133

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
              G             F R+ +  G         A++ I +GC++FC+FC +PY RG  
Sbjct: 134 T-LGVNPA--------PFARVDVESGP------AAAYVKISDGCNRFCSFCSIPYIRGRY 178

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            S    ++     + I  G  EITL+GQ+   W G   + EK T + LL +L+E      
Sbjct: 179 HSFPYERIRASVEQCIAEGSVEITLIGQDTGCW-GSDFE-EKSTTAQLLSNLAEEFPDTW 236

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
            R     P  ++D L+ A    D +  YL +P+Q  +  +LKSM R+ +A E+ ++++RI
Sbjct: 237 FRIMYVEPDGITDELLDAIAAHDNVCDYLDMPLQHANPELLKSMRRKGSAPEFLKLLERI 296

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+  P I + +  I GFPGET++ F   M+ +++  +     F YS   GT   ++ +QV
Sbjct: 297 RTRVPGITLRTTLITGFPGETEEAFDELMEFLEEADFDYVGVFPYSREEGTRAYDLPDQV 356

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI---EKHGKEKGKLVGRSPWLQSVV 439
           +E +K  R   ++              +G+ ++VL+   E+ G+  G+ + ++P +  VV
Sbjct: 357 EEELKVARAQEVRDLCDAVGSVHTADRIGKELDVLVLGAEEDGQLFGRAMCQAPDVDGVV 416

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  +G+I++V I D     + GE++
Sbjct: 417 Y-VDGGEVGEIVRVTIVDTLAYDMEGEII 444


>gi|254369038|ref|ZP_04985051.1| hypothetical protein FTAG_00878 [Francisella tularensis subsp.
           holarctica FSC022]
 gi|157121959|gb|EDO66129.1| hypothetical protein FTAG_00878 [Francisella tularensis subsp.
           holarctica FSC022]
          Length = 439

 Score =  167 bits (424), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 129/457 (28%), Positives = 215/457 (47%), Gaps = 52/457 (11%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           +P+  FV S GC  N+ DS R+     ++GY+ V+S D+AD++++NTC     A ++   
Sbjct: 4   IPKIGFV-SLGCPKNLVDSERIITKLKAEGYDLVDSYDNADMVIVNTCGFLNSAIDESLE 62

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +G         I E G +LV   GC+   + + I  + P V  + GPQ Y  L   +E 
Sbjct: 63  VIGE-------AIAENGKVLV--TGCLGN-KADLIKEKHPEVLSITGPQDYENL---IEA 109

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
                 +   D+      + + +    Y       ++L I EGC+  CTFC++P  RG  
Sbjct: 110 VHTHAPIFANDFVSLVPPQGIKLTPRHY-------SYLKISEGCNNTCTFCIIPDIRGKL 162

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLL 251
            SRS+  ++ EA KL + GV E+ ++ Q+ +A           W  K     +    DL 
Sbjct: 163 KSRSIDNIMKEAEKLKNAGVKELLVISQDTSAYGVDIKYKSGIWNNKEY---QSNIIDLA 219

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
            +L ++    RL Y   +P       + A G +   +PYL + +Q  S  +LK M R   
Sbjct: 220 TALGDLDMWTRLHYVYPYPHVDKIVPLMAQGKI---LPYLDVSLQHSSPEVLKRMKRPAH 276

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
             +    I++ R + PDI ISS FIVGFPGET+ DF   +D  +K    +   FKYS   
Sbjct: 277 TQKTLDRINKWRDICPDITISSTFIVGFPGETEADFEHLLDFAEKAQLDRVGCFKYSEVE 336

Query: 372 GTPGSNMLEQVDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL 428
           G   +     + E +K +RL   + LQ ++   ++      VG   +V+I+   K++   
Sbjct: 337 GAKANQFDNLISEEIKQQRLDEFMGLQAQISADKLQ---RFVGTEQQVIIDVINKDENYA 393

Query: 429 VGRSPWL------QSVVLNS--KNHNIGDIIKVRITD 457
           +GR+ +       Q ++ ++  +N  +G+   V IT+
Sbjct: 394 IGRTKYDAPEVDGQVIIGDALERNLKVGEFANVEITE 430


>gi|28871162|ref|NP_793781.1| hypothetical protein PSPTO_4019 [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|81730041|sp|Q87Y01|RIMO_PSESM RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|28854412|gb|AAO57476.1| conserved hypothetical protein TIGR01125 [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 443

 Score =  167 bits (424), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 143/467 (30%), Positives = 231/467 (49%), Gaps = 64/467 (13%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC   + DS R+      +GYE V + +DAD++V+NTC   + A  +    +G     
Sbjct: 12  SLGCPKALVDSERILTQLRMEGYEVVATYEDADVVVVNTCGFIDTAKAESLEVIGE---- 67

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               IKE G   V+V GC+   +   I    P V  V GPQ Y             ++VV
Sbjct: 68  ---AIKENGK--VIVTGCMG-VDASVIRAVHPSVLSVTGPQQY-------------EQVV 108

Query: 151 DTDYSV----EDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           +  + V    +D    + +V   G        A+L I EGC+  C+FC++P  RG  +SR
Sbjct: 109 NAVHDVVPPRKDHNPLIDLVPPQGVKLTPRHYAYLKISEGCNHSCSFCIIPSMRGKLVSR 168

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNA------WRGKGLDGE--KCTFSDLLYSLSEI 257
            +  V+DEA++L+ +GV E+ ++ Q+ +A      +R    DG+  K   ++L  +L  +
Sbjct: 169 PVGDVLDEAKRLVKSGVKELLVISQDTSAYGVDVKYRTGFWDGQPVKTRMTELCQALGSM 228

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
              VRL Y   +P       + A G    ++PYL +P Q  S +ILK M R   A+E + 
Sbjct: 229 GVWVRLHYVYPYPHVDELIPLMAAGK---ILPYLDIPFQHASPKILKLMKR--PAFEDKT 283

Query: 318 IIDRIRSVR---PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
           +  RI++ R   PD+ I S FIVGFPGET++DF+  +D + +    +   F+YSP  G P
Sbjct: 284 LA-RIKNWREQCPDLIIRSTFIVGFPGETEEDFQYLLDWLTEAQLDRVGCFQYSPVEGAP 342

Query: 375 GSNMLEQ--VDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV 429
            +N+L+   V ++VK    +R +  Q+ +   ++      +G+ IEVLI++   ++G  V
Sbjct: 343 -ANLLDAAIVPDDVKQDRWDRFMAHQQAISAARLQMK---IGKEIEVLIDEV-DDRGA-V 396

Query: 430 GR----SPWLQSVVL----NSKNHNIGDIIKVRITDVKISTLYGELV 468
           GR    +P +   V     +      GD I  R+TD     L+ E++
Sbjct: 397 GRCFFDAPEIDGNVFIGLEDGSTVQPGDKIMCRVTDADEYDLWAEML 443


>gi|71661088|ref|XP_817570.1| tRNA modification enzyme [Trypanosoma cruzi strain CL Brener]
 gi|70882770|gb|EAN95719.1| tRNA modification enzyme, putative [Trypanosoma cruzi]
          Length = 530

 Score =  167 bits (424), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 126/458 (27%), Positives = 221/458 (48%), Gaps = 45/458 (9%)

Query: 28  FVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRI 87
           F+ ++GC  NV D   M  +    GY   +  +DAD+ +LN+C ++  + E   S + R+
Sbjct: 52  FIHTFGCSHNVSDGEYMAGLLAQAGYRVTDVFNDADVYLLNSCTVKNPSEEHFISMMNRV 111

Query: 88  RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNV-VVGPQTYYRLPELLERARFG 146
           R         G  L  VVAGCV QA+     R +   +V V+G +   R+ E++  A  G
Sbjct: 112 R-------ATGKPL--VVAGCVPQADP----RNTQWDDVSVIGVRNIDRVGEVIHEALQG 158

Query: 147 K--RVVDTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
              R++  +    +K  F +L  +D    R+      + I  GC   CT+C     RG  
Sbjct: 159 HCVRLIGVNEHANNKQDFNKLPPLDLPKIRRNRFIEIIPISVGCLNHCTYCKTKQARGDL 218

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL-V 261
            S  +  +V   R ++  GV EI +  ++V A+   G+D        L   + EI+G  V
Sbjct: 219 RSWPIESIVLRVRSVLKEGVKEIRITSEDVGAY---GIDINTDIICLLRAIVKEIQGTEV 275

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLM------PYLHLPVQSGSDRILKSMNRRHTAYEY 315
            +R   S+P      L++   D   L+       ++H+P+QSGS+RIL +M R +T  E+
Sbjct: 276 MMRVGMSNP----PYLLRHLDDFAALLRHPNVYEFVHIPIQSGSNRILNAMQREYTLEEF 331

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
            + + RIRSV P++ +++D I  FPGE + ++R TM+L D + +      ++ PR  TP 
Sbjct: 332 YECVHRIRSVVPNVTLATDIICAFPGEGEAEWRETMELCDHVRFPVLNITRFYPRRNTPA 391

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFN-----DACVGQIIEVLIEKHGKEKGKLVG 430
           ++M +Q+  +V        +++  E    FN     D  VG++  V + +   +K  LVG
Sbjct: 392 ASM-KQIPTDVA-------KRRTSELTAFFNSYRTLDHMVGEVHSVALLETAHDKHHLVG 443

Query: 431 RSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            +     V+++ +   +G+ + V I      ++ G ++
Sbjct: 444 HTKAYVQVLVDPQEARLGETVTVVIMSTTKYSVVGRVL 481


>gi|260911507|ref|ZP_05918095.1| Fe-S oxidoreductase [Prevotella sp. oral taxon 472 str. F0295]
 gi|260634371|gb|EEX52473.1| Fe-S oxidoreductase [Prevotella sp. oral taxon 472 str. F0295]
          Length = 446

 Score =  167 bits (424), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 126/434 (29%), Positives = 206/434 (47%), Gaps = 25/434 (5%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N  ++     M    G    N  + AD+ ++NTC + E A  K    + R+   
Sbjct: 16  TLGCKLNFSETSTFGQMLQDMGVRTANEGEPADICLINTCSVTEVADHKCRQIIHRM--- 72

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPI--VNVVVGPQTYYRLPELLERARF-GK 147
               +++     VVV GC AQ E E   R S I  V++V+G      L + L  A   G+
Sbjct: 73  ----VRKNPGAFVVVTGCYAQLESE---RVSAIEGVDLVLGSNEKANLIQYLNDAWADGQ 125

Query: 148 R--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           R   +   +SV+ K   +       +R      FL +Q+GCD FCT+C +P+ RG   + 
Sbjct: 126 RGSALHRHFSVKTK--DIKTFAPSCSRGNRTRYFLKVQDGCDYFCTYCTIPFARGFSRNP 183

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           S+S +V +A+   + G  EI L G N+  ++G+G +     F DL+ +L +++G+ R R 
Sbjct: 184 SISSLVQQAQDAANEGGKEIVLTGVNIGEFKGEGNE----RFIDLVKALDQVEGIQRFRI 239

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
           ++  P  ++D LI         MP+ H+P+QSGSD +LK M RR+    +   +  I+  
Sbjct: 240 SSIEPNLLTDELIDYCATSRAFMPHFHIPLQSGSDEVLKLMQRRYDTALFAHKVQLIKQR 299

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P+  I  D +VG  GE    F    + +  +  +Q   F YS R GT    +   V + 
Sbjct: 300 IPNAFIGVDVMVGSRGEEPAYFEDCYNFLKSLDISQLHVFPYSERPGTAALRIPYVVSDA 359

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN---S 442
            K  R   L +   E+  +F  + +G   +VL EK  K K  + G +P    V L    +
Sbjct: 360 EKRRRSKLLLELSDEKLEAFYASQIGSQSQVLFEKAAKGKA-MHGFTPNYVRVELPARLA 418

Query: 443 KNHNIGDIIKVRIT 456
           K+     ++ VR+T
Sbjct: 419 KDEFDNQLLPVRLT 432


>gi|221198052|ref|ZP_03571098.1| conserved hypothetical protein [Burkholderia multivorans CGD2M]
 gi|221204390|ref|ZP_03577407.1| conserved hypothetical protein [Burkholderia multivorans CGD2]
 gi|221175247|gb|EEE07677.1| conserved hypothetical protein [Burkholderia multivorans CGD2]
 gi|221181984|gb|EEE14385.1| conserved hypothetical protein [Burkholderia multivorans CGD2M]
          Length = 453

 Score =  167 bits (424), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 133/480 (27%), Positives = 224/480 (46%), Gaps = 67/480 (13%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  FV S GC   + DS ++     ++GYE   + D ADL+V+NTC   ++A ++    
Sbjct: 5   PKVGFV-SLGCPKALVDSEQIITQLRAEGYEISGTYDGADLVVVNTCGFIDEAVQESLDA 63

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVA---QAEGEEILRR-SPIVNVVVGPQTYYRLPEL 139
           +G         + E G   V+V GC+     A G  ++    P V  V GP     + + 
Sbjct: 64  IGEA-------LTENGK--VIVTGCLGAKKSASGSGLIEEVHPKVLAVTGPHAVGEVMQA 114

Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           +  +   K          D F  L +   G        A+L I EGC+  CTFC++P  R
Sbjct: 115 V-HSHLPKP--------HDPFVDL-VPPAGIKLTPRHYAYLKISEGCNHRCTFCIIPSMR 164

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFS 248
           G  +SR +++V+ EA  L  +GV E+ ++ Q+ +A           W GK +   K   +
Sbjct: 165 GDLVSRPVAEVMLEAENLFKSGVKELLVISQDTSAYGVDVKYRTGFWNGKPI---KTRMT 221

Query: 249 DLLYSLSEIKG----LVRLRYTTSHPRD------MSDCLIKAHGDLDVLMPYLHLPVQSG 298
           DL+ +L E+       VRL Y   +P        M++   K H     ++PYL +P Q  
Sbjct: 222 DLVAALGELAAQYGAWVRLHYVYPYPSVDEVIPLMAEGPFKGH-----VLPYLDVPFQHA 276

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
              +LK M R   A +  + + + R + PD+ I S FI GFPGET++ F   +D + +  
Sbjct: 277 HPEVLKRMKRPANAEKVLERVQKWREICPDLTIRSTFIAGFPGETEEQFETLLDFIREAE 336

Query: 359 YAQAFSFKYSPRLGTPGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIE 415
             +   F YSP  G   + +   + ++V+ E   R + + +++  Q+++     VG+ ++
Sbjct: 337 LDRVGCFAYSPVEGASANELDGALPDDVREERRARFMEVAEEVSAQRIARK---VGKTLK 393

Query: 416 VLIEKHGKEK--GKLVGRSPWLQSVVL------NSKNHNIGDIIKVRITDVKISTLYGEL 467
           VLI++   E   G+    +P +  VV        SK + +GD + V+IT      L+GE+
Sbjct: 394 VLIDEVSDEGGIGRTAADAPEIDGVVYVEPATKASKRYKVGDFVSVKITGADGHDLWGEV 453


>gi|163868318|ref|YP_001609527.1| ribosomal protein S12 methylthiotransferase [Bartonella tribocorum
           CIP 105476]
 gi|238065292|sp|A9IUA4|RIMO_BART1 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|161017974|emb|CAK01532.1| conserved hypothetical protein [Bartonella tribocorum CIP 105476]
          Length = 437

 Score =  167 bits (424), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 135/460 (29%), Positives = 217/460 (47%), Gaps = 43/460 (9%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + P+  FV S GC   + DS R+     S+GYE       AD++++NTC   + A ++  
Sbjct: 2   VAPRISFV-SLGCPKALVDSERIITSLRSEGYEISRQHQGADVVIVNTCGFLDSARKESL 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           + +       +  +KE G   V+V GC+  A+ + I +  P V  + GPQ Y  + E + 
Sbjct: 61  ANI-------DEALKENGK--VIVTGCLG-ADPDVIRQTYPNVLAITGPQAYESVIEAVH 110

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
            A            + D F  L    G     R   A+L I EGC   C+FC++P  RG 
Sbjct: 111 TAI---------PPIHDPFLDLVPPQGIRLTPRHY-AYLKISEGCSNRCSFCIIPTLRGD 160

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNV-----------NAWRGKGLDGEKCTFSDL 250
             SR +S V+ EA KL+  GV E+ ++ Q+            N+W+ + +   K  F DL
Sbjct: 161 LTSRPISDVLREAEKLVQAGVKELLVISQDTSAYGIDLKYLENSWKDRTI---KTKFFDL 217

Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
              L ++   VR+ Y   +P    D +I+      +L PYL +P Q  S  +L+ M R  
Sbjct: 218 CRELGDMGIWVRMHYVYPYPH--VDEVIELMAAKKIL-PYLDIPFQHASPTVLRHMKRPA 274

Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370
              +  + I++ R + PD+ + S FIVGFPGET++DF   ++ ++     +A  FKY   
Sbjct: 275 LMEKTNRRIEKWRKICPDLTLRSTFIVGFPGETNEDFNMLLEWLEDAKIERAGCFKYEEV 334

Query: 371 LGTPGSNM-LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGK-EKGK 427
            G   +++ LE + E+VK  R      K ++         +G+ ++VLI E  GK  KG+
Sbjct: 335 KGAVANDLGLENIPEDVKENRWHRFMAKQQQISTHLLKKKIGKRLQVLIDESQGKVAKGR 394

Query: 428 LVGRSPWLQSVVLNSKNH--NIGDIIKVRITDVKISTLYG 465
               +P +  VV  S      +G+ + V+I       LYG
Sbjct: 395 SQYDAPEIDGVVHISSRRPLRVGEFVTVKIEQSDAYDLYG 434


>gi|158292783|ref|XP_314113.4| AGAP005211-PA [Anopheles gambiae str. PEST]
 gi|157017155|gb|EAA09381.5| AGAP005211-PA [Anopheles gambiae str. PEST]
          Length = 553

 Score =  167 bits (424), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 128/468 (27%), Positives = 214/468 (45%), Gaps = 54/468 (11%)

Query: 22  IVP--QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEK 79
           ++P  Q  ++K++GC  N  D+  M       GY   +  D ADL VLN+C ++  + + 
Sbjct: 61  VIPETQHIYMKTWGCAHNTSDTEYMAGQLAQYGYNLTSDKDSADLWVLNSCTVKNPSEDT 120

Query: 80  VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVN--VVVGPQTYYRLP 137
                   RN   +  + G    VVVAGCV QA       RS  +    VVG Q   R+ 
Sbjct: 121 -------FRNEIEAAHQAGKH--VVVAGCVPQAAP-----RSDYLKGLSVVGVQQIDRVA 166

Query: 138 ELLERARFGKRV-------VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190
           E++E    G  V       VD       K     +      RK  +   + I  GC   C
Sbjct: 167 EVVEETLKGHSVRLLQAKKVDGRKVAGPKLALPKV------RKNPLIEVIPINSGCLNAC 220

Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDL 250
           T+C   + R   +S  + ++VD A+++  +GVCEI L  ++   + G+ +     +  +L
Sbjct: 221 TYCKTKFARADLVSYPVQEIVDRAQQVFQDGVCEIWLTSEDTGTY-GRDIGS---SLPEL 276

Query: 251 LYSLSEI--------KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
           L+ L E+         G+    Y   H  +M+  L         +  +LH+PVQSGSD I
Sbjct: 277 LWQLVEVIPEGCMMRLGMTNPPYILEHLDEMAKILSHPR-----VYSFLHIPVQSGSDAI 331

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           L  M R +   ++ +++D +R+  P I I++D I GFPGET+ DF  T+ L +K  +   
Sbjct: 332 LGEMRREYCVKDFERMVDFLRAQVPGITIATDIICGFPGETEADFDDTLALCEKYQFPSL 391

Query: 363 FSFKYSPRLGTPGSNMLEQVDENVK--AERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
           F  ++ PR GTP + M +     VK   +RL      L      +     G    VL+ +
Sbjct: 392 FINQFFPRPGTPAAKMTKVPANEVKTRTKRL----TDLFHSYEPYKKYEAGTKQTVLVTE 447

Query: 421 HGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
              ++   VG + + + ++L   N+ +G  ++V IT     +++G+++
Sbjct: 448 ISHDRKHFVGHNKFYEQILLPMHNNLLGKQVEVEITGCTKFSMFGKVI 495


>gi|149731822|ref|XP_001494687.1| PREDICTED: CDK5 regulatory subunit associated protein 1-like 1
           [Equus caballus]
          Length = 578

 Score =  167 bits (424), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 124/456 (27%), Positives = 221/456 (48%), Gaps = 39/456 (8%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           Q+ +++++GC  N  D   M     + GY+   +  DADL +LN+C ++  A +    F 
Sbjct: 63  QKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDH---FR 119

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             I+  +    K      +V+AGCV QA+  +   +      ++G Q   R+ E++E   
Sbjct: 120 NSIKKAQEENKK------IVLAGCVPQAQPRQDYLKG---LSIIGVQQIDRVVEVVEETI 170

Query: 145 FGKRVVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            G  V       +D  +RL  + +D    RK  +   ++I  GC   CT+C   + RG  
Sbjct: 171 KGHSVRLLGQK-KDNGKRLGGAPLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNL 229

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI----- 257
            S  + ++VD A++    GVCEI L  ++  A+ G+ +     +   LL+ L E+     
Sbjct: 230 ASYPIDELVDRAKQSFQEGVCEIWLTSEDTGAY-GRDIG---TSLPALLWKLVEVIPEGA 285

Query: 258 ---KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
               G+    Y   H  +M+  L     +   +  +LH+PVQS SD +L  M R +   +
Sbjct: 286 MLRLGMTNPPYILEHLEEMAKIL-----NHPRVYAFLHIPVQSASDTVLMEMKREYCVAD 340

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
           +++++D ++   P I I++D I GFPGET++DF+ T+ LV++  +   F  ++ PR GTP
Sbjct: 341 FKRVVDFLKEKVPGITIATDIICGFPGETNEDFQETVKLVEEYKFPSLFINQFYPRPGTP 400

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFN--DACVGQIIEVLIEKHGKEKGKLVGRS 432
            + M EQV   VK +R   L +       S+N  D  VG+  +VL+ +   +    V  +
Sbjct: 401 AAKM-EQVPAQVKKQRTKDLSRVFH----SYNPYDHKVGERQQVLVTEESFDSKFYVAHN 455

Query: 433 PWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            + + V++      +G +++V I +     + G+ V
Sbjct: 456 RFYEQVLVPKNPTFMGKMVEVDIYESGKHFMKGQPV 491


>gi|330894643|gb|EGH27304.1| ribosomal protein S12 methylthiotransferase [Pseudomonas syringae
           pv. mori str. 301020]
          Length = 447

 Score =  167 bits (424), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 146/474 (30%), Positives = 234/474 (49%), Gaps = 65/474 (13%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  FV S GC   + DS R+      +GYE V + +DAD++V+NTC   + A  +    
Sbjct: 10  PKVGFV-SLGCPKALVDSERILTQLRMEGYEVVATYEDADVVVVNTCGFIDTAKAESLEV 68

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G         IKE G   V+V GC+   +   I    P V  V GPQ Y          
Sbjct: 69  IGE-------AIKENGK--VIVTGCMG-VDANVIRDVHPSVLSVTGPQQY---------- 108

Query: 144 RFGKRVVDTDYSV----EDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
              ++VV+  + V    +D    + +V   G        A+L I EGC+  C+FC++P  
Sbjct: 109 ---EQVVNAVHDVVPPRKDHNPLIDLVPPQGVKLTPRHYAYLKISEGCNHSCSFCIIPSM 165

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA------WRGKGLDGE--KCTFSDL 250
           RG  +SR +  V+DEA++L+ +GV E+ ++ Q+ +A      +R    DG+  K   ++L
Sbjct: 166 RGKLVSRPVGDVLDEAKRLVKSGVKELLVISQDTSAYGVDVKYRTGFWDGQPVKTRMTEL 225

Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
             +L  +   VRL Y   +P       + A G    ++PYL +P Q  S +ILK M R  
Sbjct: 226 CQALGSMGVWVRLHYVYPYPHVDELIPLMAAGK---ILPYLDIPFQHASPKILKLMKR-- 280

Query: 311 TAYEYRQIIDRIRSVR---PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
            A+E + +  RI++ R   PD+ I S FIVGFPGET++DF+  +D + +    +   F+Y
Sbjct: 281 PAFEDKTLA-RIKNWREQCPDLIIRSTFIVGFPGETEEDFQYLLDWLTEAQLDRVGCFQY 339

Query: 368 SPRLGTPGSNMLEQ--VDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422
           SP  G P +N+L+   V ++VK    +R +  Q+ +   ++      +G+ IEVLI++  
Sbjct: 340 SPVEGAP-ANLLDAAIVPDDVKQDRWDRFMAHQQAISAARLQMK---IGKEIEVLIDEV- 394

Query: 423 KEKGKLVGR----SPWLQSVVL----NSKNHNIGDIIKVRITDVKISTLYGELV 468
            ++G  VGR    +P +   V            GD I  R+TD     L+ E++
Sbjct: 395 DDRGA-VGRCFFDAPEIDGNVFFGLEEGSTVQPGDKIMCRVTDADEYDLWAEML 447


>gi|226954088|ref|ZP_03824552.1| MiaB-like tRNA modifying enzyme YliG [Acinetobacter sp. ATCC 27244]
 gi|294650305|ref|ZP_06727673.1| 2-methylthioadenine synthetase [Acinetobacter haemolyticus ATCC
           19194]
 gi|226835129|gb|EEH67512.1| MiaB-like tRNA modifying enzyme YliG [Acinetobacter sp. ATCC 27244]
 gi|292823835|gb|EFF82670.1| 2-methylthioadenine synthetase [Acinetobacter haemolyticus ATCC
           19194]
          Length = 447

 Score =  167 bits (424), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 134/468 (28%), Positives = 222/468 (47%), Gaps = 50/468 (10%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  FV S GC   + DS R+     ++GY+  +  D ADL+V+NTC   E A ++    
Sbjct: 4   PKVGFV-SLGCPKALVDSERILTQLKTEGYQVASDYDGADLVVINTCGFIESAVQESLDA 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G   + +N R        V+V GC+ + E ++I +  P V  V G   Y  + E +   
Sbjct: 63  IGEAMS-ENGR--------VIVTGCLGKDE-DKIRQMHPNVLKVTGAAAYQDVMEAVHEY 112

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
                         + F  L + + G        A+L I EGC+  CTFC++P  RG  +
Sbjct: 113 VPAP-------PKHNPFIDL-VPEQGVRLTPKHYAYLKISEGCNHRCTFCIIPSMRGDLV 164

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLY 252
           SR + QV+DEA  L   GV E+ ++ Q+ +A           W G+ +   K  F D+  
Sbjct: 165 SRPVGQVLDEAAALKRAGVKEVLVISQDTSAYGVDTKYKLDFWNGQPV---KTKFYDMCE 221

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
           +L ++   VRL Y   +P   +   + A G    ++PYL +P Q  S RILK M R   +
Sbjct: 222 ALGQLGIWVRLHYVYPYPHVDAAIDLMAQGK---ILPYLDIPFQHASPRILKLMKRPAHS 278

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
               + +   R   P++ I S F+VGFPGET++DF+  +D + +    +   F YSP  G
Sbjct: 279 ENTLERLKLWREKCPELVIRSTFVVGFPGETEEDFQMLLDWLKEAQLDRVGCFTYSPVEG 338

Query: 373 TPGSNMLEQVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV 429
              +++ + V E VK    ER + +Q+++   ++      +GQ + VL++   +E    V
Sbjct: 339 ATANDLPDHVPEEVKQERYERFMEVQQQISAAKLQKR---IGQRMIVLVDSLEEEFPVAV 395

Query: 430 GRS----PWLQSVV----LNSKNHNIGDIIKVRITDVKISTLYGELVV 469
            RS    P +   V    ++      G++++V ITD     L+ +L+ 
Sbjct: 396 ARSYADAPEIDGNVFVEDIDKSVIQAGNLLEVEITDADEYDLFAKLIA 443


>gi|114705323|ref|ZP_01438231.1| hypothetical protein FP2506_10301 [Fulvimarina pelagi HTCC2506]
 gi|114540108|gb|EAU43228.1| hypothetical protein FP2506_10301 [Fulvimarina pelagi HTCC2506]
          Length = 424

 Score =  167 bits (424), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 124/401 (30%), Positives = 189/401 (47%), Gaps = 28/401 (6%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V S+GC++N Y++  M+    + G        +   IV NTC +    AE V     +IR
Sbjct: 5   VVSFGCRLNTYEAEVMKREASAAGL----GAGERPAIVFNTCAV---TAEAVRQARQQIR 57

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG------PQTYYRLPELLER 142
             +    +E  D  +VV GC AQ E          V+ V+G       ++Y  LP+    
Sbjct: 58  KAR----RENPDARIVVTGCAAQTEPARFAEMIE-VDAVIGNDEKLKAESYAALPDFGVA 112

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           A    +V D     E     +  ++G   R R   A + IQ GCD  CTFC++PY RG  
Sbjct: 113 AEEKVKVNDIMSVTETAGHMVDAIEG---RAR---AIVQIQNGCDHRCTFCIIPYGRGNS 166

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS-LSEIKGLV 261
            S  +  VV++ ++L+ +G  E+ L G ++ +W G  L G       L+ S L  +  L 
Sbjct: 167 RSVPMGAVVEQVKRLVASGYNEVVLSGVDMTSW-GADLPGAP-KLGKLIQSILKNVPDLP 224

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           RLR ++    +  + LI+A      +MP+LHL +Q+G D ILK M RRH   +       
Sbjct: 225 RLRLSSIDSVEADEALIEAIASDPRVMPHLHLSLQAGDDMILKRMKRRHLRADSIAFCTE 284

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R  RPDI   +D I GFP ET+  F  T+ LV++ G      F +SPR GTP + M  Q
Sbjct: 285 MRRKRPDIVFGADLIAGFPTETEAMFENTLKLVEECGLTFLHVFPFSPREGTPAARM-PQ 343

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422
           ++++V   R   L+              +G    +L+E+ G
Sbjct: 344 LEKSVIKNRAARLRAAGENAFARHLTRQIGTQRSILVEREG 384


>gi|294102421|ref|YP_003554279.1| MiaB-like tRNA modifying enzyme [Aminobacterium colombiense DSM
           12261]
 gi|293617401|gb|ADE57555.1| MiaB-like tRNA modifying enzyme [Aminobacterium colombiense DSM
           12261]
          Length = 434

 Score =  167 bits (424), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 128/446 (28%), Positives = 218/446 (48%), Gaps = 32/446 (7%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           + + GC+ N  ++  +  M    G E V +    D  VL TC +   A +K         
Sbjct: 12  IMAMGCRSNQSEADSLASMLKRTGAEIVKA-PPYDAAVLITCTVTAIADKKSRQ------ 64

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
            L     ++  + L+V  GC AQ     + +R   V+++VG +  +++P LL  A   KR
Sbjct: 65  -LLRRLRRQSPEALLVATGCWAQKADPNLAQRLG-VDLLVGNRQKWQIPSLLNHALGEKR 122

Query: 149 -----VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
                +V  D    ++++ L       + +    AF+ IQ+GC+ FC++CV+P+ RG  +
Sbjct: 123 PLPLTIVRNDILHSEEWDHLFQFQPLLHSR----AFVKIQDGCNHFCSYCVIPFVRGEPV 178

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR L+ V++E R + D+G  E+ L G ++  +   G  GE  +  +L+     I G+ R+
Sbjct: 179 SRPLNSVLEEVRSIADSGCTEVVLTGVHLGLY---GQFGE-VSLGELVRQAGAIPGVERI 234

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+ +  P  ++D L+ A  +     P+LHLP+QSG D +L+ M R ++  EY   ++R R
Sbjct: 235 RFGSLEPFGINDELLSALAETPQFCPHLHLPLQSGDDTVLQRMRRGYSPLEYMASVERAR 294

Query: 324 S-VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
             +   I IS+D +VGFPGE +  F  T+  + ++ + +   F YS R GT  ++  + +
Sbjct: 295 HYLGSRIHISTDVLVGFPGEDERAFANTLSFMKEVAFGKVHVFPYSSREGTRAASFDDHL 354

Query: 383 DENVKAERLLCLQKKLREQQVSFNDAC---VGQIIEVLIEKHGKEKGKLVGRSPWLQSVV 439
             +V  ER   + K +   +  F + C   VG+ I V IE    E G   G +P+    V
Sbjct: 355 PRHVVQER---VHKVMEMGEQLFREYCSQWVGEEISVFIED-AAETGS-TGLTPFFVKAV 409

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYG 465
           +  +  + G IIK          LYG
Sbjct: 410 V-PQMVSPGRIIKTLTRSYDSEQLYG 434


>gi|170289680|ref|YP_001736496.1| 2-methylthioadenine synthetase [Candidatus Korarchaeum cryptofilum
           OPF8]
 gi|170173760|gb|ACB06813.1| 2-methylthioadenine synthetase [Candidatus Korarchaeum cryptofilum
           OPF8]
          Length = 432

 Score =  167 bits (424), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 131/447 (29%), Positives = 228/447 (51%), Gaps = 37/447 (8%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           RF++++YGC MN  DS  ME +    G  RVN   +AD+IVLNTC+++    +++   + 
Sbjct: 2   RFYIETYGCSMNRSDSQIMEKLLEEAGLIRVNDPREADVIVLNTCNVKTPTEQRM---IQ 58

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R R L            +VVAGC+A+++G ++        V+V P+   ++ E +  A  
Sbjct: 59  RARELSKY-------APLVVAGCMAKSQGYKL---KDFSKVLVAPREIDKIVEAVNSAIA 108

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G+R    ++   DK   L            +   + I EGC   CT+C+    RG   S 
Sbjct: 109 GRRAEFLEWRFIDKSSYL-------RDPLELVGIIPIAEGCMGACTYCITRLARGGLTSF 161

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR- 264
               ++  A   +  G  E+ L  ++  A+ G+ + GE    ++L+  LS++ G  R+R 
Sbjct: 162 PKRNILRLAEHFLRKGAVELWLTSEDTAAY-GRDM-GE--NLANLIMDLSDLPGDFRIRV 217

Query: 265 --YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
              T S    +   LI A+    V   + HLPVQSGSDR+L+ M R +T  ++  ++D I
Sbjct: 218 GMMTPSSALPILSELIGAYRSRKV-YKFFHLPVQSGSDRVLEDMGRNYTVDQFLSMVDFI 276

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R    D++I++D IVGFP E ++DF +T+ +++++        K+  R GT  ++M +  
Sbjct: 277 RKELSDVSIATDIIVGFPTEDEEDFESTLAILERLKPDVVNVSKFGARPGTKAASMRKLP 336

Query: 383 DENV--KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440
           D  V  +++ +  L ++++E+    N+  +G+ +EVL+ + G EKG   GR+   + V L
Sbjct: 337 DAIVSRRSKEVNELVERIKEE---VNERYLGRELEVLVSEKG-EKG-FQGRTNSYKPVAL 391

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGEL 467
             +   +G    V I D + + L GE+
Sbjct: 392 --REVKLGHFYLVEIVDFRANYLIGEV 416


>gi|152990825|ref|YP_001356547.1| tRNA modifying enzyme [Nitratiruptor sp. SB155-2]
 gi|151422686|dbj|BAF70190.1| tRNA modifying enzyme [Nitratiruptor sp. SB155-2]
          Length = 410

 Score =  167 bits (424), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 124/421 (29%), Positives = 211/421 (50%), Gaps = 41/421 (9%)

Query: 26  RFFVKSYGCQMNVYDSL----RMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + F K++GC+ N++D+     +++D   +Q  E      DAD++V+N+C +   A   V 
Sbjct: 2   KVFFKTFGCRTNLFDTQVMMSKLKDFTITQNEE------DADIVVVNSCTVTNGADSSVR 55

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           +++ RI+          G+  + + GC A  +GEE+  +  ++ V  G     R+ +LL+
Sbjct: 56  NYINRIQK---------GNKKIYLTGCGAFTKGEELFEKKKVIGVF-GHSEKERINDLLK 105

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           + +F +     D    DK    +IV     + R   AF+ IQEGCD  C++C++PY RG 
Sbjct: 106 KEQFFQL---GDLESVDK----TIVSEFIGKSR---AFIKIQEGCDFRCSYCIIPYVRGN 155

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
             S   S ++++ +KL  NG  E  L G NV ++ GK  D    + + LL  ++ I+G+ 
Sbjct: 156 ARSMDESLILEQIQKLASNGFGEFILTGTNVGSY-GKDKD---TSLAKLLKKIAMIRGVR 211

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R  +  P  ++D   K   D   +  +LH+ +Q  SD +L+ MNRR+   E  Q+ + 
Sbjct: 212 RIRLGSIEPIQITDEF-KEILDEPWMAKHLHIALQHTSDTMLEIMNRRNRVKEDLQLFEE 270

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I S     AI +DFIVG PGE++  F    + +          F YS R GTP ++M   
Sbjct: 271 IAS--HGYAIGTDFIVGHPGESEAIFEEAYENLKLFPLTHIHLFTYSKRDGTPSASMKPH 328

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           V  NV  ER   +Q+ ++++   F        + VL+E  G+++G   G   +   V + 
Sbjct: 329 VLGNVAKERYKKIQELVKQKNFDFRKKQSD--LYVLVE--GEKRGHYFGYDQFYNPVFIE 384

Query: 442 S 442
           S
Sbjct: 385 S 385


>gi|312115373|ref|YP_004012969.1| MiaB-like tRNA modifying enzyme YliG [Rhodomicrobium vannielii ATCC
           17100]
 gi|311220502|gb|ADP71870.1| MiaB-like tRNA modifying enzyme YliG [Rhodomicrobium vannielii ATCC
           17100]
          Length = 448

 Score =  167 bits (423), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 133/464 (28%), Positives = 204/464 (43%), Gaps = 46/464 (9%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
            P+  FV S GC   + DS R+     ++GY      D AD++V+NTC   + A  +   
Sbjct: 13  APKVGFV-SLGCAKALVDSERILTRLRAEGYVISPDYDGADVVVVNTCGFLDSAKAESLD 71

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +G     +N R        V+V GC    E   I    P V  V GP  Y  +   +  
Sbjct: 72  AIGEAMA-ENGR--------VIVTGCFG-VEDRRIRDSFPGVLAVTGPHQYDAVVNAIHA 121

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           A         D           +   G        A+L I EGC   C+FC++P  RG  
Sbjct: 122 AAPAPHAPFLDL----------VPRAGLRLTPPHYAYLKISEGCHNRCSFCIIPQLRGDL 171

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLL 251
            SR  + V+ EA  L++ G  E+ ++ Q+ +A           WRG  +   K   ++L 
Sbjct: 172 ASRPAADVLAEAEALVEGGAKELLVISQDTSAYGLDLKYTASDWRGSPV---KARLTELC 228

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
            +L  +   VRL Y   +P       + A G +   +PYL +P Q  S  +LK+M R   
Sbjct: 229 DALGSLGAWVRLHYVYPYPHVDELLPLMAEGKI---LPYLDIPFQHASLSVLKAMRRPAN 285

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
             +  + I R R   PD+ + S FIVGFPGET++DF   +D + +    +   FKY    
Sbjct: 286 QEKTLETIRRWREAVPDLGLRSTFIVGFPGETEEDFAVLLDWLREAKLTRVGCFKYENVE 345

Query: 372 GTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR 431
           G P   +  QV E+VKAER   L +  RE   +     VG+ I+V+I++  ++     GR
Sbjct: 346 GAPSRALDGQVPEDVKAERFARLMEVQREVSAAVLAGQVGKTIDVIIDEVDEDGA--TGR 403

Query: 432 SPW----LQSVVL--NSKNHNIGDIIKVRITDVKISTLYGELVV 469
            PW    +   VL  ++ +   GD+++  I +     L+ E V 
Sbjct: 404 GPWDAPEIDGSVLFEDAGDMEPGDMVRATIIEADDYDLWAEPVA 447


>gi|333029245|ref|ZP_08457306.1| MiaB-like tRNA modifying enzyme [Bacteroides coprosuis DSM 18011]
 gi|332739842|gb|EGJ70324.1| MiaB-like tRNA modifying enzyme [Bacteroides coprosuis DSM 18011]
          Length = 438

 Score =  167 bits (423), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 111/393 (28%), Positives = 195/393 (49%), Gaps = 22/393 (5%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N  ++     +    G       + AD+ ++NTC + E A +K    + R+   
Sbjct: 16  TLGCKLNFSETSTFGKILREYGVRTARKNEIADICIINTCSVTEMADKKCRQAIKRMH-- 73

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
                +E     +VV GC AQ + +EI      V++V+G +      + L      K+  
Sbjct: 74  -----REHPGAFIVVTGCYAQLKPDEITEIEG-VDIVLGSEQKKDFIKFL--GNLEKK-- 123

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
           D   +   K   +       +R      FL +Q+GCD FCT+C +P+ RG   + S+  +
Sbjct: 124 DGAQAYTTKLTDIKTFSPSCSRGNRTRFFLKVQDGCDYFCTYCTIPFARGFSRNGSIESI 183

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270
           V++A++   +G  EI + G N   + GK  +    TF DL+  L E++G+ R R ++  P
Sbjct: 184 VNQAKQAARDGGKEIVITGVNTGDF-GKTTNE---TFIDLVKLLDEVEGIERFRISSIEP 239

Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330
             ++D +I+        MP+ H+P+QSGSD +LK M+RR+    +   +++I+++ P   
Sbjct: 240 NLLTDEIIEFVAQSKRFMPHFHIPLQSGSDDVLKLMHRRYDTALFAHKVEKIKALVPHAF 299

Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV---DENVK 387
           I  D IVG  GET   F  ++D ++ +   Q   F YS R GT    +  +V   +++ +
Sbjct: 300 IGVDVIVGTRGETQTFFDKSLDFIESLDITQLHVFSYSERPGTMALKIDHEVSPQEKHER 359

Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
           ++RLL +  K  E   +F +  +GQ + VL EK
Sbjct: 360 SQRLLAISDKKTE---AFYEQFIGQEMPVLFEK 389


>gi|150403330|ref|YP_001330624.1| MiaB-like tRNA modifying protein [Methanococcus maripaludis C7]
 gi|150034360|gb|ABR66473.1| MiaB-like tRNA modifying enzyme [Methanococcus maripaludis C7]
          Length = 425

 Score =  167 bits (423), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 128/456 (28%), Positives = 234/456 (51%), Gaps = 46/456 (10%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + +++ YGC +N  D+  +++     + +E  +++DD+D+IV+NTC +R++   ++ S +
Sbjct: 2   KIYIEGYGCTLNTADTEIIKNSVNEFEEFELADNVDDSDIIVINTCIVRQETEHRMISRI 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGP-QTYYR-------- 135
              ++L         D  VVVAGC+A+A  ++I     + +V++ P +  Y         
Sbjct: 62  EYFKSL---------DKKVVVAGCMAKALPKKI---KNLADVLIMPREAQYSGIILKDNL 109

Query: 136 LPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
           L E  E+     + ++ + ++ +K +++S         +G+   L I EGC   CT+C+V
Sbjct: 110 LKECSEKYNEYNQNLNFEDNLNEKIKKVS--------SQGLITALPICEGCLGSCTYCIV 161

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
              RG  +S     +V +A +L+  G   + +  Q+   +   GLD  K   S+L+  +S
Sbjct: 162 KRARGNLVSYDRDLIVKKAEELVKTGTKCLLVTAQDTACY---GLDN-KDNLSNLIDDIS 217

Query: 256 EIKGLVRLRYTTSHPR---DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
           EI     +R    H +    + D LI++     V+  +LHLP+QSG D++LK MNR +T 
Sbjct: 218 EIPEKFAMRIGMMHAKFAEPILDELIESFKSEKVV-KFLHLPIQSGDDQVLKDMNRNYTV 276

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
            EY  ++D  +S   ++  ++D IVGFP ET++ F  T+++V KI      + KYS R  
Sbjct: 277 DEYISVLDEFKSKIKNLNFTTDVIVGFPTETEEAFENTLEIVKKIKPDFTHAAKYSQRKY 336

Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS 432
           T  + +L+QVD  ++ ER   L +  RE     N   +G+  E+L+ K+       +G +
Sbjct: 337 TKAA-VLKQVDTKIRKERSEILNELRRELSYENNKRHIGETFEILVTKNN------LGVT 389

Query: 433 PWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
              ++V+       IG+  + +IT  K   L G+L+
Sbjct: 390 NNCKNVIFEEPAQ-IGEFKRAKITGAKTFGLSGKLL 424


>gi|330835295|ref|YP_004410023.1| RNA modification protein [Metallosphaera cuprina Ar-4]
 gi|329567434|gb|AEB95539.1| RNA modification protein [Metallosphaera cuprina Ar-4]
          Length = 418

 Score =  167 bits (423), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 128/448 (28%), Positives = 228/448 (50%), Gaps = 36/448 (8%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + + ++YGC +N  D+  M  +   + +E V +++ AD++V+NTC +R +  EK+     
Sbjct: 2   KVYFETYGCALNKGDTYSMMSLLRERNHEIVETLEGADVVVINTCAVRMETEEKMKK--- 58

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           RIR L  +  K      +V+AGC+  A+   ++      + ++GPQ+   + +++E    
Sbjct: 59  RIRELSKTGKK------LVIAGCLTGAQ-PGLVSSLSPSSSMIGPQSISDIVKVVES--- 108

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            +RV+  D        R  + DG       + + + I++GC   C FC+    R    S 
Sbjct: 109 NERVISLDSKTPSILPR--VFDG-------LISVIPIEDGCAGNCNFCITKLARRNLRSY 159

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLR 264
            L  +V+  +++I  G  EI L GQ+   +   GLD G K T  D++  ++ ++G   +R
Sbjct: 160 PLRNIVETVKRMISQGAKEIELTGQDTAVY---GLDMGGKVTLPDVVKEVASLEGDFMIR 216

Query: 265 YTTSHPRDMS----DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
                P +M+    D +++A  +  V   + H+PVQSG+D++L+ MNR++T  E+R I+ 
Sbjct: 217 VGMMTP-EMAMRHLDSILEAWENPKVY-KFFHIPVQSGNDKVLREMNRKYTVDEFRAIVK 274

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
            IR     + I++D IVG PGE D  F  T++L+ ++ + +     YS R  T  S+ML 
Sbjct: 275 EIRKKFRLVNITTDIIVGHPGEDDSAFEDTLNLMKELRFERIHIAMYSIRPNT-RSSMLA 333

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440
           QV   +K ERL        E     +   +G+ + VL  + GK+   ++GR+     V+L
Sbjct: 334 QVPGPIKKERLKRAVSLYEELSREVHKEYLGRQMRVLALERGKDD-TIIGRTINYIPVIL 392

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
           +  +  +G+   V+I D     L GE+V
Sbjct: 393 S--DAVLGNWYDVKIVDSSFFDLRGEIV 418


>gi|332228849|ref|XP_003263603.1| PREDICTED: CDK5 regulatory subunit-associated protein 1-like 1
           [Nomascus leucogenys]
          Length = 536

 Score =  167 bits (423), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 123/454 (27%), Positives = 215/454 (47%), Gaps = 35/454 (7%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           Q+ +++++GC  N  D   M     + GY+   +  DADL +LN+C ++  A +    F 
Sbjct: 64  QKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAED---HFR 120

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             I+  +    K      +V+AGCV QA+  +   +      ++G Q   R+ E++E   
Sbjct: 121 NSIKKAQEENKK------IVLAGCVPQAQPRQDYLKG---LSIIGVQQIDRVVEVVEETI 171

Query: 145 FGKRVVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            G  V       +D   RL  + +D    RK  +   ++I  GC   CT+C   + RG  
Sbjct: 172 KGHSVRLLGQK-KDNGRRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNL 230

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI----- 257
            S  + ++VD A++    GVCEI L  ++  A+ G+ +         LL+ L E+     
Sbjct: 231 ASYPIDELVDRAKQSFQEGVCEIWLTSEDTGAY-GRDIG---TNLPTLLWKLVEVIPEGA 286

Query: 258 ---KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
               G+    Y   H  +M+  L         +  +LH+PVQS SD +L  M R +   +
Sbjct: 287 MLRLGMTNPPYILEHLEEMAKILNHPR-----VYAFLHIPVQSASDSVLMEMKREYCVAD 341

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
           +++++D ++   P I I++D I GFPGETD DF+ T+ LV++  +   F  ++ PR GTP
Sbjct: 342 FKRVVDFLKEKVPGITIATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTP 401

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPW 434
            + M EQV   VK +R   L +       S  D  +G+  +VL+ +   +    V  + +
Sbjct: 402 AAKM-EQVPAQVKKQRTKDLSRVF--HSYSPYDHKIGERQQVLVTEESFDSKFYVAHNQF 458

Query: 435 LQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            + V++      +G +++V I +     + G+ V
Sbjct: 459 YEQVLVPKNPAFMGKMVEVDIHESGKHFMKGQPV 492


>gi|311259791|ref|XP_003128247.1| PREDICTED: CDK5 regulatory subunit-associated protein 1-like 1-like
           [Sus scrofa]
          Length = 578

 Score =  167 bits (423), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 124/456 (27%), Positives = 219/456 (48%), Gaps = 39/456 (8%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           Q+ +++++GC  N  D   M     + GY+   +  DADL +LN+C ++  A +    F 
Sbjct: 63  QKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDH---FR 119

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             I+  +    K      +V+AGCV QA+  +   +      ++G Q   R+ E++E   
Sbjct: 120 NSIKKAQEENKK------IVLAGCVPQAQPRQDYLKG---LSIIGVQQIDRVVEVVEETI 170

Query: 145 FGKRVVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            G  V       +D  +RL  + +D    RK  +   ++I  GC   CT+C   + RG  
Sbjct: 171 KGHSVRLLGQK-KDNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNL 229

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI----- 257
            S  + ++VD A++    GVCEI L  ++  A+ G+ +     +   LL+ L E+     
Sbjct: 230 ASYPIDELVDRAKQSFQEGVCEIWLTSEDTGAY-GRDIG---TSLPALLWKLVEVIPEGA 285

Query: 258 ---KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
               G+    Y   H  +M+  L         +  +LH+PVQS SD +L  M R +   +
Sbjct: 286 MLRLGMTNPPYILEHLEEMAKILNHPR-----VYAFLHIPVQSASDTVLMDMKREYCVAD 340

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
           +++++D ++   P I I++D I GFPGETD DF+ T+ LV++  +   F  ++ PR GTP
Sbjct: 341 FKRVVDFLKDKVPGITIATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTP 400

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFN--DACVGQIIEVLIEKHGKEKGKLVGRS 432
            + M EQV   VK +R   L +       S+N  D  +G+  +VL+ +   +    V  +
Sbjct: 401 AAKM-EQVPAQVKKQRTKDLSRVFH----SYNPYDHKIGERQQVLVTEESFDSKFYVAHN 455

Query: 433 PWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            + + V++      +G +++V I +     + G+ V
Sbjct: 456 RFYEQVLVPKNPTFMGKMVEVDIYESGKHFMKGQPV 491


>gi|288927530|ref|ZP_06421377.1| 2-methylthioadenine synthetase [Prevotella sp. oral taxon 317 str.
           F0108]
 gi|288330364|gb|EFC68948.1| 2-methylthioadenine synthetase [Prevotella sp. oral taxon 317 str.
           F0108]
          Length = 431

 Score =  167 bits (423), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 126/452 (27%), Positives = 216/452 (47%), Gaps = 46/452 (10%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEKVYSFLGRIR 88
           + GC  N+ DS  +   F + GY  V+     + +++V+NTC   E A E+  + +    
Sbjct: 10  TMGCSKNLVDSELLMKQFEANGYHCVHDSKKPNGEIVVINTCGFIESAKEESINTI---- 65

Query: 89  NLKNSRIKEGGDL-LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147
            L+ ++ KE G L  + V GC++Q   +E+ +  P V+   G   Y  L + L     GK
Sbjct: 66  -LEFAQAKEEGRLKQLYVMGCLSQRYQKELEQEIPQVDKFYGKFNYKNLLKDL-----GK 119

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVT-----AFLTIQEGCDKFCTFCVVPYTRGIE 202
            V+                    N  R +T     A+L I EGCD+ C +C +P   G  
Sbjct: 120 GVI-----------------ASCNGTRSITTPRHYAYLKISEGCDRSCAYCAIPLITGKH 162

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR   ++++E R L+  GV E  ++ Q +  + G  LDG++   +DL+  +++IKG+  
Sbjct: 163 VSRPKEEILEEVRSLVSQGVKEFQIIAQELTYY-GVDLDGQR-QITDLISEMADIKGVEW 220

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R   ++P      L++   +   +  Y+ + +Q  SD +L  M+R  T  +  ++I RI
Sbjct: 221 IRLHYAYPNQFPHSLLQVIKNKPNVCKYIDIALQHISDNMLTRMHRHVTKAQTMELIKRI 280

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE-Q 381
           R   P I + +  +VGFPGET+DDF   +D V    + +  +F YS   GT  +   E  
Sbjct: 281 REEIPGIHLRTTLMVGFPGETEDDFNELLDFVKWARFERMGAFAYSEEEGTYSAKHYEDD 340

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPW------L 435
           + + VK  RL  L    ++         VG+ + V+I++  KE    +GR+ W       
Sbjct: 341 IPDEVKQRRLDQLMALQQDISAEVEAQKVGKTLRVIIDR--KEGDYYIGRTEWSSPEVDP 398

Query: 436 QSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
           + ++  +    +G    VRITD +   LYGE+
Sbjct: 399 EVLIPATVKLRVGSFYNVRITDSEEFDLYGEI 430


>gi|288927648|ref|ZP_06421495.1| 2-methylthioadenine synthetase [Prevotella sp. oral taxon 317 str.
           F0108]
 gi|288330482|gb|EFC69066.1| 2-methylthioadenine synthetase [Prevotella sp. oral taxon 317 str.
           F0108]
          Length = 446

 Score =  167 bits (423), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 125/434 (28%), Positives = 205/434 (47%), Gaps = 25/434 (5%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N  ++     M    G    N  + AD+ ++NTC + E A  K    + R+   
Sbjct: 16  TLGCKLNFSETSTFGQMLQDMGVRTANEGEPADICLINTCSVTEVADHKCRQIIHRM--- 72

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPI--VNVVVGPQTYYRLPELLERARF-GK 147
               ++E     VVV GC AQ E E++   S I  V++V+G      L + L  A   G+
Sbjct: 73  ----VRENPGAFVVVTGCYAQLESEKV---SAIEGVDLVLGSNEKANLIQYLNDAWADGQ 125

Query: 148 R--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           R   +   +S+  K   +       +R      FL +Q+GCD FCT+C +P+ RG   + 
Sbjct: 126 RGKALHRHFSMNTK--DIKTFAPSCSRGNRTRYFLKVQDGCDYFCTYCTIPFARGFSRNP 183

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           S++ +V +A    ++G  EI L G N+  ++G G +     F DL+ +L +++G+ R R 
Sbjct: 184 SIASLVQQAHDAANDGGKEIVLTGVNIGEFKGGGNE----RFIDLVKALDQVEGIQRFRI 239

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
           ++  P  ++D LI         MP+ H+P+QSGSD +LK M RR+    +   +  I+  
Sbjct: 240 SSIEPNLLTDELIDYCASSRAFMPHFHIPLQSGSDEVLKLMQRRYDTALFAHKVQLIKQR 299

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P+  I  D +VG  GE    F    D +  +  +Q   F YS R GT    +   V++ 
Sbjct: 300 IPNAFIGVDVMVGSRGEEPAYFEECYDFLKSLDISQLHVFPYSERPGTAALRIPYVVNDA 359

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN---S 442
            K  R   L +   E+  +F  + +G    VL EK  K K  + G +P    V L    +
Sbjct: 360 EKRRRSKLLLELSDEKLETFYASQIGSQSLVLFEKAAKGKA-MHGFTPNYVRVELPASLA 418

Query: 443 KNHNIGDIIKVRIT 456
           K+     ++ VR+T
Sbjct: 419 KDEFDNQLLPVRLT 432


>gi|329113598|ref|ZP_08242378.1| Putative methylthiotransferase [Acetobacter pomorum DM001]
 gi|326697120|gb|EGE48781.1| Putative methylthiotransferase [Acetobacter pomorum DM001]
          Length = 414

 Score =  167 bits (423), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 119/439 (27%), Positives = 201/439 (45%), Gaps = 57/439 (12%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           ++GC++N ++S  M +           S+D+  +I++NTC +  +A  +    + R    
Sbjct: 8   TFGCRLNTWESEVMRN--------HAASLDN--VIIVNTCAVTGEAERQARQAIRRAH-- 55

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLP---------ELLE 141
                +E  D  +VV GC AQ                + P+++  LP         E L+
Sbjct: 56  -----RENPDARIVVTGCAAQ----------------INPESWSDLPGVARVLGNEEKLK 94

Query: 142 RARFGKRVVDTDYSVED----KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197
              +    +    +V D    K     +V     R R   AF+ +Q+GC+  CTFC++P+
Sbjct: 95  AESWSAAALSQPLAVSDIMAAKETAAHLVTEFAGRTR---AFVQVQQGCNHRCTFCIIPF 151

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257
            RG   S  +  VV++ R L+ +G  E+ L G ++ +W G+ L G+          L  +
Sbjct: 152 GRGPSRSVPVGAVVEQVRALVQSGYREVVLTGVDMTSW-GEDLPGKPVLGQLCRRVLRLV 210

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
             L R+R ++  P ++ + + +   +    MPYLHL +Q+GSD ILK M RRH   +  +
Sbjct: 211 PELERMRLSSVDPVEIDEDIWQLLAEEPRFMPYLHLSLQAGSDLILKRMKRRHLVADAAR 270

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
           +++R RS+RPDI I +D I GFP E +  F  T + + +        F YS R GTP + 
Sbjct: 271 VVERARSLRPDIGIGADIIAGFPTEDESLFEETRNFLAQQALPYLHVFPYSERPGTPAAR 330

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQS 437
           M   V    +  R   L++        + ++ +GQ + VL+E          G S     
Sbjct: 331 M-RAVPVPERKARAAQLREVGAVSAARYYESLIGQPLRVLMET------PTTGHSEQFAP 383

Query: 438 VVLNSKNHNIGDIIKVRIT 456
           V L      +G+II ++ T
Sbjct: 384 VRLAQGEAEVGEIITLQST 402


>gi|308497879|ref|XP_003111126.1| hypothetical protein CRE_03881 [Caenorhabditis remanei]
 gi|308240674|gb|EFO84626.1| hypothetical protein CRE_03881 [Caenorhabditis remanei]
          Length = 560

 Score =  167 bits (423), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 125/453 (27%), Positives = 223/453 (49%), Gaps = 41/453 (9%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           V Q+ +V+++GC  N  DS  M  +    GY+ +   + AD+ +LN+C ++  + ++   
Sbjct: 45  VGQKVWVRTWGCSHNTSDSEYMAGLLQQAGYDVLKEGEAADVWILNSCTVKTPSEQQA-- 102

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNV-VVGPQTYYRLPELLE 141
                 NL     ++G    +++AGCV+QA   E      + NV +VG +   R+ E++E
Sbjct: 103 -----NNLVVQGQEQGKK--IIMAGCVSQAAPSEPW----LQNVSIVGVKQIDRIVEVVE 151

Query: 142 RARFGKRVVDTDYSVEDKFERL-------SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCV 194
               G +V+ T         RL       +++     RK  +   L+I  GC   CT+C 
Sbjct: 152 ETLKGNKVLPTILRTSRLHVRLLTRNRPDALLSLPKMRKNELIEVLSISTGCLNNCTYCK 211

Query: 195 VPYTRGIEISRSLSQVVDEARKLI-DNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS 253
               RG  +S  L  +V++AR    D GV E+ L  +++ AW G+ ++       DLL +
Sbjct: 212 TKMARGDLVSYPLEDLVEQARAAFHDEGVKELWLTSEDLGAW-GRDIN---LVLPDLLNA 267

Query: 254 LSEI--------KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
           L ++         G+    Y   H  ++++ L     +   +  +LH+PVQS SD +L  
Sbjct: 268 LVKVIPDGSMMRLGMTNPPYILDHLEEIAEIL-----NHPKVYAFLHIPVQSASDAVLTD 322

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           M R ++   + QI D +    P+I I++D I+ FP ET +DF  +M+LV K  +   F  
Sbjct: 323 MKREYSRRHFEQIADYMIKHVPNIYIATDMILAFPTETLEDFEESMELVRKYKFPSLFIN 382

Query: 366 KYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK 425
           +Y PR GTP +  L+++D  ++A +      +L      F +  +G+I  VL+ +   +K
Sbjct: 383 QYYPRSGTPAAR-LKKID-TIEARKRTAAMSELFRSYTRFTEDRIGEIHNVLVTEVAADK 440

Query: 426 GKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDV 458
              VG +   + +++  ++  +G+ I+VRIT V
Sbjct: 441 LHGVGHNKSYEQILVPLEHCKMGEWIEVRITSV 473


>gi|262372668|ref|ZP_06065947.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Acinetobacter junii
           SH205]
 gi|262312693|gb|EEY93778.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Acinetobacter junii
           SH205]
          Length = 447

 Score =  167 bits (423), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 133/464 (28%), Positives = 216/464 (46%), Gaps = 44/464 (9%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  FV S GC   + DS R+     ++GY+  +  D ADL+V+NTC   E A ++    
Sbjct: 4   PKVGFV-SLGCPKALVDSERILTQLKTEGYQVASDYDGADLVVVNTCGFIESAVQESLDA 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G   + +N R        V+V GC+ + E ++I +  P V  V G   Y  + E +   
Sbjct: 63  IGEAMS-ENGR--------VIVTGCLGKDE-DKIRQMHPNVLKVTGAAAYQDVMEAVHEY 112

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
                         + F  L + + G        A+L I EGC+  CTFC++P  RG  +
Sbjct: 113 VPAP-------PKHNPFIDL-VPEQGVRLTPKHYAYLKISEGCNHRCTFCIIPSMRGDLV 164

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLY 252
           SR +  V+DEA  L   GV E+ ++ Q+ +A           W G+ +   K  F D+  
Sbjct: 165 SRPVGSVLDEAAALKRAGVKEVLVISQDTSAYGVDTKYKLDFWNGQPV---KTKFYDMCE 221

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
           +L ++   VRL Y   +P   +   + A G    ++PYL +P Q  S RILK M R   +
Sbjct: 222 ALGQLGIWVRLHYVYPYPHVDAVIDLMAQGK---ILPYLDIPFQHASPRILKLMKRPAHS 278

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
               + +   R   P++ I S F+VGFPGET++DF+  +D + +    +   F YSP  G
Sbjct: 279 ENTLERLKLWREKCPELVIRSTFVVGFPGETEEDFQILLDWLKEAQLDRVGCFTYSPVEG 338

Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS 432
              +++ + V E +K ER     +  +E   +     +GQ + VL++    E    V RS
Sbjct: 339 ATANDLPDHVPEEIKQERYERFMEVQQEISAAKLQKRIGQKMTVLVDSLEDEFPVAVARS 398

Query: 433 ----PWLQSVV----LNSKNHNIGDIIKVRITDVKISTLYGELV 468
               P +   V    ++      GD+++V ITD     L+ +L+
Sbjct: 399 YADAPEIDGNVFVEDIDKSVIKAGDLLEVEITDADEYDLFAKLI 442


>gi|163743347|ref|ZP_02150727.1| MiaB-like tRNA modifying enzyme [Phaeobacter gallaeciensis 2.10]
 gi|161383341|gb|EDQ07730.1| MiaB-like tRNA modifying enzyme [Phaeobacter gallaeciensis 2.10]
          Length = 421

 Score =  167 bits (423), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 118/397 (29%), Positives = 192/397 (48%), Gaps = 31/397 (7%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  M+++    G +        + +V+NTC +  +A  K    + ++R  
Sbjct: 9   TLGCRLNAYETEAMKELSQQAGLQ--------NAVVVNTCAVTAEAVRKARQEIRKLR-- 58

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVV-----VGPQTYYRL---PELLER 142
                +E  D  ++V GC AQ E E       +  V+     +  QT+ ++   P+ +  
Sbjct: 59  -----RENPDAPIIVTGCAAQTEPETFAAMDEVTQVIGNTEKMQAQTWQQIAKGPDFIGA 113

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
               K  VD   SV +    L  +DG   R R   A++ +Q GCD  CTFC++PY RG  
Sbjct: 114 TE--KVQVDDIMSVTETAGHL--IDGFGTRSR---AYVQVQNGCDHRCTFCIIPYGRGNS 166

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            S     VVD+ ++L+D G  E+ L G ++ +W G  L         ++  L  +  L R
Sbjct: 167 RSVPAGVVVDQIKRLVDRGYNEVVLTGVDLTSW-GADLPATPKLGDLVMRILKLVPDLPR 225

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LR ++    ++ D L++A      LMP+LHL +Q G D ILK M RRH   +  +  +  
Sbjct: 226 LRISSIDSIEVDDNLMQAIATEPRLMPHLHLSLQHGDDLILKRMARRHLRDDAIRFCEEA 285

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R +RP++   +D I GFP ETD  F  ++ LV          F YS R GTP + +  QV
Sbjct: 286 RKLRPEMTFGADIIAGFPTETDAHFENSLKLVSDCDLTWLHVFPYSKREGTPAARIPSQV 345

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419
           + ++  ER   L+     Q  +   A VG+  ++L+E
Sbjct: 346 NGSLIRERAARLRAAGDAQVQTHLTAAVGKAHQILME 382


>gi|296157787|ref|ZP_06840621.1| MiaB-like tRNA modifying enzyme YliG [Burkholderia sp. Ch1-1]
 gi|295892033|gb|EFG71817.1| MiaB-like tRNA modifying enzyme YliG [Burkholderia sp. Ch1-1]
          Length = 461

 Score =  167 bits (423), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 135/481 (28%), Positives = 221/481 (45%), Gaps = 67/481 (13%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
            P+  FV S GC   + DS ++     ++GYE   + D ADL+V+NTC   ++A ++   
Sbjct: 12  APKVGFV-SLGCPKALVDSEQIITQLRAEGYEISGTYDGADLVVVNTCGFIDEAVQESLD 70

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVA---QAEGEEILRR-SPIVNVVVGPQTYYRLPE 138
            +G   N +N +        V+V GC+     A G  ++    P V  V GP   + L E
Sbjct: 71  AIGEALN-ENGK--------VIVTGCLGAKKSASGSGLIEEVHPKVLAVTGP---HALGE 118

Query: 139 LLERARFGKRVVDTDYS-VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197
           +++        V T      D F  L    G     R   A+L I EGC+  CTFC++P 
Sbjct: 119 VMQH-------VHTHLPKPHDPFVDLVPAAGVKLTPRHY-AYLKISEGCNHRCTFCIIPS 170

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCT 246
            RG  +SR ++ V+ EA  L  +GV E+ ++ Q+ +A           W GK +   K  
Sbjct: 171 MRGDLVSRPVADVMLEAENLFKSGVKELLVISQDTSAYGVDVKYRTGFWNGKPI---KTR 227

Query: 247 FSDLLYSLSEIKG----LVRLRYTTSHPR------DMSDCLIKAHGDLDVLMPYLHLPVQ 296
            +DL+ +L E+       VRL Y   +P        M++   K H     ++PYL +P Q
Sbjct: 228 MTDLVGALGELAAQYGAWVRLHYVYPYPSVDEVIPMMAEGPFKGH-----VLPYLDVPFQ 282

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
                +LK M R   A +  + + + R + PD+ I S FI GFPGET++ F+  +D + +
Sbjct: 283 HAHPEVLKRMKRPANAEKVMERVKKWREMCPDLTIRSTFIAGFPGETEEQFQTLLDFIRE 342

Query: 357 IGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEV 416
               +   F YSP  G   + +   + + V+ ER     +   E         VG+ ++V
Sbjct: 343 AELDRVGCFAYSPVQGATANELDGALPDEVREERRARFMEVAEEVSAKRIAKKVGKTLKV 402

Query: 417 LIEKHGKEKGKLVGRSP----------WLQSVVLNSKNHNIGDIIKVRITDVKISTLYGE 466
           L+++   + G  +GR+           ++   V  SK + +GD + V+IT      L+GE
Sbjct: 403 LVDEINADGG--IGRTAADAPEIDGVVYIAPAVKASKRYKVGDFVSVKITGADGHDLWGE 460

Query: 467 L 467
           +
Sbjct: 461 V 461


>gi|221134267|ref|ZP_03560572.1| MiaB-like tRNA modifying enzyme YliG [Glaciecola sp. HTCC2999]
          Length = 481

 Score =  167 bits (423), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 129/428 (30%), Positives = 207/428 (48%), Gaps = 50/428 (11%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ DS R+     ++GY+ V++ +DA+L+++NTC   + A E+    +G     
Sbjct: 51  SLGCPKNLVDSERILTQLRTEGYDVVSTYNDAELVIVNTCGFIDSAVEESLDTIGEA--- 107

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               + E G   V+V GC+   E +EI    P V  + GP  Y  + E +          
Sbjct: 108 ----LAENGK--VIVTGCLGVKE-DEIREVHPNVLSITGPHAYESVVEQVHE-------- 152

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
                  + +  L + D G        A+L I EGC+  CTFC++P  RG  +SR + +V
Sbjct: 153 HLPKPAHNPYLNL-VPDHGVKLTPKHYAYLKISEGCNHRCTFCIIPSMRGDLVSRPVGEV 211

Query: 211 VDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYSLSEIKG 259
           ++EA++L   GV E+ ++ Q+ +A           W G  +   K   + L   L  +  
Sbjct: 212 LNEAKRLKAAGVNELLVISQDTSAYGVDVKHKTDFWDGMPV---KTHMNQLCEQLGTLDM 268

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
            VRL Y   +P    D LI       VL PYL +P Q  S RIL+ M R  +A    + I
Sbjct: 269 WVRLHYVYPYPH--VDDLIPLMTQGKVL-PYLDIPFQHASKRILRLMKRPGSA---DRTI 322

Query: 320 DRIRSVR---PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
           DRI+  R   P++ I S FIVGFPGET+ +F   +  ++     +A  FKYSP  G   +
Sbjct: 323 DRIKKWREICPELIIRSTFIVGFPGETEAEFEELLAFLEAAQIDRAGCFKYSPVEGATAN 382

Query: 377 NMLEQVDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGR 431
            + + + E+VK ERL   + +Q ++  Q++      +G+  +V+I++   E   G+    
Sbjct: 383 ALPDHIPEDVKEERLARFMAVQSQISAQRLQTR---IGKEYQVVIDEVTSEGAVGRCFAD 439

Query: 432 SPWLQSVV 439
           +P +  VV
Sbjct: 440 APEVDGVV 447


>gi|167648821|ref|YP_001686484.1| MiaB-like tRNA modifying enzyme [Caulobacter sp. K31]
 gi|167351251|gb|ABZ73986.1| MiaB-like tRNA modifying enzyme [Caulobacter sp. K31]
          Length = 449

 Score =  167 bits (423), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 130/446 (29%), Positives = 207/446 (46%), Gaps = 51/446 (11%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P    V ++GC++N Y+S  +     + G         AD +V NTC +  +A  +    
Sbjct: 30  PDGVDVVTFGCRLNAYESEAIRARASADGL--------ADAVVFNTCAVTNEAVRQARQA 81

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           + + R       +E  D  ++V GC AQ +        P +++V+G         LL+ +
Sbjct: 82  IRKAR-------RERPDARLIVTGCAAQID-PAAFAAMPEIDLVLGNAEKAAPGALLDTS 133

Query: 144 RFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
               RV V+   S+++    L  + G  +R R   A++ +Q GCD  CTFC++P+ RG  
Sbjct: 134 ---TRVRVNDIMSIKETAGHL--IAGLKDRAR---AYVEVQNGCDHRCTFCIIPFGRGNS 185

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            S    +VV++ R+L   G  E+ L G +V +W G  L G+      +   L  +  L R
Sbjct: 186 RSAPAGEVVEQVRRLSAEGYNEVVLTGVDVTSW-GTDLPGQPTLGQLVGRILKLVPDLPR 244

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LR ++    ++   L+K       LMPYLHL +Q+G D ILK M RRH   +  +++  +
Sbjct: 245 LRLSSIDAAEIDPDLLKLLETELRLMPYLHLSLQAGDDMILKRMKRRHNRADALKLVAEV 304

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R VRPD A  +D I GFP E++  F  T+ LV++ G A    F YS R GTP + M    
Sbjct: 305 RRVRPDTAFGADLIAGFPTESEGAFENTLKLVEEAGLAFLHVFPYSARPGTPAARMPPVK 364

Query: 383 DENVK--AERL-----LCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-------- 427
              +K  A RL       L++ L+ Q        VG+ +  L+E+ G  + +        
Sbjct: 365 GGVIKDRARRLREAGQAGLERHLQRQ--------VGRTLSGLVEREGVARAEDFTEIAFD 416

Query: 428 --LVGRSPWLQSVVLNSKNHNIGDII 451
             L G +P  Q        H+   +I
Sbjct: 417 PALGGAAPQGQIAAFRVTGHDGSRVI 442


>gi|71737831|ref|YP_275930.1| ribosomal protein S12 methylthiotransferase [Pseudomonas syringae
           pv. phaseolicola 1448A]
 gi|257487030|ref|ZP_05641071.1| putative tRNA modifying protein [Pseudomonas syringae pv. tabaci
           ATCC 11528]
 gi|289625986|ref|ZP_06458940.1| putative tRNA modifying protein [Pseudomonas syringae pv. aesculi
           str. NCPPB3681]
 gi|289651498|ref|ZP_06482841.1| putative tRNA modifying protein [Pseudomonas syringae pv. aesculi
           str. 2250]
 gi|298488227|ref|ZP_07006262.1| methylthiotransferase [Pseudomonas savastanoi pv. savastanoi NCPPB
           3335]
 gi|123747566|sp|Q48FA7|RIMO_PSE14 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|71558384|gb|AAZ37595.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Pseudomonas
           syringae pv. phaseolicola 1448A]
 gi|298157235|gb|EFH98320.1| methylthiotransferase [Pseudomonas savastanoi pv. savastanoi NCPPB
           3335]
 gi|320323072|gb|EFW79161.1| ribosomal protein S12 methylthiotransferase [Pseudomonas syringae
           pv. glycinea str. B076]
 gi|330868590|gb|EGH03299.1| ribosomal protein S12 methylthiotransferase [Pseudomonas syringae
           pv. aesculi str. 0893_23]
 gi|331009328|gb|EGH89384.1| ribosomal protein S12 methylthiotransferase [Pseudomonas syringae
           pv. tabaci ATCC 11528]
          Length = 447

 Score =  167 bits (423), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 146/474 (30%), Positives = 234/474 (49%), Gaps = 65/474 (13%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  FV S GC   + DS R+      +GYE V + +DAD++V+NTC   + A  +    
Sbjct: 10  PKVGFV-SLGCPKALVDSERILTQLRMEGYEVVATYEDADVVVVNTCGFIDTAKAESLEV 68

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G         IKE G   V+V GC+   +   I    P V  V GPQ Y          
Sbjct: 69  IGE-------AIKENGK--VIVTGCMG-VDANVIRDVHPSVLSVTGPQQY---------- 108

Query: 144 RFGKRVVDTDYSV----EDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
              ++VV+  + V    +D    + +V   G        A+L I EGC+  C+FC++P  
Sbjct: 109 ---EQVVNAVHDVVPPRKDHNPLIDLVPPQGVKLTPRHYAYLKISEGCNHSCSFCIIPSM 165

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA------WRGKGLDGE--KCTFSDL 250
           RG  +SR +  V+DEA++L+ +GV E+ ++ Q+ +A      +R    DG+  K   ++L
Sbjct: 166 RGKLVSRPVGDVLDEAKRLVKSGVKELLVISQDTSAYGVDVKYRTGFWDGQPVKTRMTEL 225

Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
             +L  +   VRL Y   +P       + A G    ++PYL +P Q  S +ILK M R  
Sbjct: 226 CQALGSMGVWVRLHYVYPYPHVDELIPLMAAGK---ILPYLDIPFQHASPKILKLMKR-- 280

Query: 311 TAYEYRQIIDRIRSVR---PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
            A+E + +  RI++ R   PD+ I S FIVGFPGET++DF+  +D + +    +   F+Y
Sbjct: 281 PAFEDKTLA-RIKNWREQCPDLIIRSTFIVGFPGETEEDFQYLLDWLTEAQLDRVGCFQY 339

Query: 368 SPRLGTPGSNMLEQ--VDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422
           SP  G P +N+L+   V ++VK    +R +  Q+ +   ++      +G+ IEVLI++  
Sbjct: 340 SPVEGAP-ANLLDAAIVPDDVKQDRWDRFMAHQQAISAARLQMK---IGKEIEVLIDEV- 394

Query: 423 KEKGKLVGR----SPWLQSVVL----NSKNHNIGDIIKVRITDVKISTLYGELV 468
            ++G  VGR    +P +   V            GD I  R+TD     L+ E++
Sbjct: 395 DDRGA-VGRCFFDAPEIDGNVFIGLEEGSTVQPGDKIMCRVTDADEYDLWAEML 447


>gi|257063746|ref|YP_003143418.1| MiaB-like tRNA modifying enzyme [Slackia heliotrinireducens DSM
           20476]
 gi|256791399|gb|ACV22069.1| MiaB-like tRNA modifying enzyme [Slackia heliotrinireducens DSM
           20476]
          Length = 409

 Score =  167 bits (423), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 118/377 (31%), Positives = 182/377 (48%), Gaps = 42/377 (11%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           RF V + GC++N  +S        + G E V  ++DADL+++NTC +  +A +K    + 
Sbjct: 5   RFHVVNLGCRVNRVESDSFAASLVAHGGESV-PVEDADLVIVNTCTVTGEAEKKTRKAVR 63

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R+       ++E     VVV GC A                 + P TY  +   +     
Sbjct: 64  RV-------LRENASGTVVVTGCAA----------------AIDPDTYGNMDSRVVVVPK 100

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGY------NRKRGVTAFLT-----IQEGCDKFCTFCV 194
           G       ++V  +   +++ +GG       +  R    F T     +Q+GC+  CTFC+
Sbjct: 101 GSMAAYVSHAVSGE-SPVAVAEGGAVGSLFGDEFRMGEDFPTRVGIKVQDGCNNACTFCI 159

Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL 254
           V   RG   SR    VV EA +    GV EI L G N+ A+R +  D        LL  L
Sbjct: 160 VHVARGRAWSRPYKDVVAEAGEYARRGVREIVLTGINLGAYRTEDAD-----LVRLLDGL 214

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLD-VLMPYLHLPVQSGSDRILKSMNRRHTAY 313
            E     R R ++  P  +SD  I      D  +  +LHLP+QSGS ++LK M R +TA 
Sbjct: 215 LEAAPNTRFRLSSVEPHTLSDDFIGLMAASDGRICRHLHLPLQSGSTKVLKEMARPYTAQ 274

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
           ++  ++DR+    P +++S+D IVGFPGET+ DF+ T D+     +++   F+YS R GT
Sbjct: 275 DFMGLVDRMYEAVPSLSLSTDVIVGFPGETERDFQDTCDVARACRFSKMHIFRYSMRAGT 334

Query: 374 PGSNMLEQVDENVKAER 390
           P +   +Q+   VKAER
Sbjct: 335 PAALRSDQISPEVKAER 351


>gi|114605648|ref|XP_001171161.1| PREDICTED: CDK5 regulatory subunit associated protein 1-like 1
           isoform 3 [Pan troglodytes]
 gi|114605650|ref|XP_001171227.1| PREDICTED: CDK5 regulatory subunit associated protein 1-like 1
           isoform 5 [Pan troglodytes]
          Length = 579

 Score =  167 bits (422), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 123/454 (27%), Positives = 215/454 (47%), Gaps = 35/454 (7%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           Q+ +++++GC  N  D   M     + GY+   +  DADL +LN+C ++  A +    F 
Sbjct: 64  QKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDH---FR 120

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             I+  +    K      +V+AGCV QA+  +   +      ++G Q   R+ E++E   
Sbjct: 121 NSIKKAQEENKK------IVLAGCVPQAQPRQDYLKG---LSIIGVQQIDRVVEVVEETI 171

Query: 145 FGKRVVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            G  V       +D   RL  + +D    RK  +   ++I  GC   CT+C   + RG  
Sbjct: 172 KGHSVRLLGQK-KDNGRRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNL 230

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI----- 257
            S  + ++VD A++    GVCEI L  ++  A+ G+ +         LL+ L E+     
Sbjct: 231 ASYPIDELVDRAKQSFQEGVCEIWLTSEDTGAY-GRDIG---TNLPTLLWKLVEVIPEGA 286

Query: 258 ---KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
               G+    Y   H  +M+  L         +  +LH+PVQS SD +L  M R +   +
Sbjct: 287 MLRLGMTNPPYILEHLEEMAKILNHPR-----VYAFLHIPVQSASDSVLMEMKREYCVAD 341

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
           +++++D ++   P I I++D I GFPGETD DF+ T+ LV++  +   F  ++ PR GTP
Sbjct: 342 FKRVVDFLKEKVPGITIATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTP 401

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPW 434
            + M EQV   VK +R   L +       S  D  +G+  +VL+ +   +    V  + +
Sbjct: 402 AAKM-EQVPAQVKKQRTKDLSRVF--HSYSPYDHKIGERQQVLVTEESFDSKFYVAHNQF 458

Query: 435 LQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            + V++      +G +++V I +     + G+ V
Sbjct: 459 YEQVLVPKNPAFMGKMVEVDIYESGKHFMKGQPV 492


>gi|46579310|ref|YP_010118.1| RNA modification protein [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|46448724|gb|AAS95377.1| RNA modification enzyme, MiaB-family [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|311233137|gb|ADP85991.1| RNA modification enzyme, MiaB family [Desulfovibrio vulgaris RCH1]
          Length = 458

 Score =  167 bits (422), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 122/432 (28%), Positives = 201/432 (46%), Gaps = 53/432 (12%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           F   ++GC++N Y++  + + +  +G+  V++ + AD+I++NTC +  +A   V   + R
Sbjct: 8   FHAATFGCKVNQYETQSLREAWLRRGFTEVDTPEGADVILVNTCAVTARAVSDVRRAIAR 67

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR----------- 135
           +     +         +VV GC AQ   EE      +V VV  PQ               
Sbjct: 68  LHRAAPA-------AGIVVTGCAAQVLREEFAGLPGVVAVV--PQEAKATLAAYDPAAAI 118

Query: 136 LPELLERARFGKR------------VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQ 183
           +P +   A  G              VV    SV   F R+     G+ R R V   + +Q
Sbjct: 119 MPPVSTHAAHGDAATAQASSATSGDVVPAQASVFPDF-RIE----GFRRARPV---VKVQ 170

Query: 184 EGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
           +GC   CT+C+VP TRG   SR   +VV E R+L+D G  E+ L G N+  + G+ L G 
Sbjct: 171 DGCSHRCTYCIVPLTRGASRSREPGEVVAELRRLLDAGFREVMLSGVNLRLY-GRDLSGA 229

Query: 244 KCTFSDLLYSL-----SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
              F DLL  +      E  G  RLR ++  P  +    +   G   ++ P LHL +QSG
Sbjct: 230 G-DFWDLLQRVERELAPEWAGRARLRISSLEPGQLGVHALDVLGGSRLVCPQLHLSLQSG 288

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIR---SVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
           S  +L+ M R H  Y    ++D +R      P   + +D ++GFPGE++D F  T+D V 
Sbjct: 289 SPDVLRRMGRGH--YSPAPLLDFLRDLGGTWPVFGLGADILMGFPGESEDAFAETLDFVR 346

Query: 356 KIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVG-QII 414
            +    A  F YS R GT  +++ E + + ++  R   ++  + +++  F +   G   +
Sbjct: 347 ALPLTYAHVFPYSRRPGTVAASLPEHLPQEIRKARAAAVRDVVAQKRAVFAERLAGLPAL 406

Query: 415 EVLIEKHGKEKG 426
            V+++  G  KG
Sbjct: 407 SVVLDGAGARKG 418


>gi|89067277|ref|ZP_01154790.1| MiaB-like tRNA modifying enzyme [Oceanicola granulosus HTCC2516]
 gi|89046846|gb|EAR52900.1| MiaB-like tRNA modifying enzyme [Oceanicola granulosus HTCC2516]
          Length = 418

 Score =  167 bits (422), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 110/355 (30%), Positives = 175/355 (49%), Gaps = 31/355 (8%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  M+ +    G         +D +V+NTC +  +A  K    + R+R  
Sbjct: 9   TMGCRLNAYETEAMKALAEQAGL--------SDALVVNTCAVTAEAVRKAKKEIRRLR-- 58

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG------PQTYYRL-PELLERA 143
                +E  +  ++V GC AQ E  E     P V  ++G      P+T+  + P+L+   
Sbjct: 59  -----RENPEAPLIVTGCAAQTE-PETFAAMPEVTRIIGNTEKMQPETWAAMAPDLIGET 112

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
              +  VD   SV +    L  +DG   R R   A++ +Q GCD  CTFC++P+ RG   
Sbjct: 113 E--RVAVDDIMSVTETAGHL--IDGFGTRSR---AYVQVQNGCDHRCTFCIIPFGRGNSR 165

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           S     VV++ ++L+D G  E+ L G ++ +W G  L  +      ++  L  +  L RL
Sbjct: 166 SVPAGVVVEQIKRLVDRGYNEVVLTGVDLTSW-GGDLPAQPRLGDLVMRILRLVPDLPRL 224

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R ++    +  D L+ A      LMP+LHL +Q G D ILK M RRH   +  +  +  R
Sbjct: 225 RISSIDSIEADDNLMLAIATEPRLMPHLHLSLQHGDDLILKRMKRRHLRDDAIRFTEEAR 284

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
            +RPD+   +D I GFP ET+  F  ++ LV++        F YSPR GTP + M
Sbjct: 285 RLRPDMTFGADIIAGFPTETEAHFANSLRLVEECDLTWLHVFPYSPRAGTPAARM 339


>gi|260554742|ref|ZP_05826963.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Acinetobacter baumannii
           ATCC 19606]
 gi|260411284|gb|EEX04581.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Acinetobacter baumannii
           ATCC 19606]
          Length = 447

 Score =  167 bits (422), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 133/467 (28%), Positives = 220/467 (47%), Gaps = 50/467 (10%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  FV S GC   + DS R+     ++GY+  +  D ADL+V+NTC   E A ++    
Sbjct: 4   PKVGFV-SLGCPKALVDSERILTQLKTEGYQVASDYDGADLVVVNTCGFIESAVQESLDA 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G   + +N R        V+V GC+ + E ++I +  P V  V G   Y  + E +   
Sbjct: 63  IGEAMS-ENGR--------VIVTGCLGKDE-DKIRQMHPNVLKVTGAAAYQDVMEAVHEY 112

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
                         + F  L + + G        A+L I EGC+  CTFC++P  RG  +
Sbjct: 113 VPAP-------PKHNPFIDL-VPEQGIRLTPKHYAYLKISEGCNHRCTFCIIPSMRGDLV 164

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLY 252
           SR +  V++EA  L   GV EI ++ Q+ +A           W G+ +   K  F D+  
Sbjct: 165 SRPVGSVLEEAAALKRAGVKEILVISQDTSAYGVDTKYKLDFWNGQPV---KTKFFDMCE 221

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
           +L ++   VRL Y   +P   +   + + G +   +PYL +P Q  S R+LK M R   +
Sbjct: 222 ALGQLGIWVRLHYVYPYPHVDAVIDLMSQGKI---LPYLDIPFQHASPRVLKLMKRPAHS 278

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
               + I   R   PD+ I S F+VGFPGET++DF+  +D + +    +   F YSP  G
Sbjct: 279 ENTLEKIKLWREKCPDLVIRSTFVVGFPGETEEDFQILLDWLVEAQLDRVGCFTYSPVEG 338

Query: 373 TPGSNMLEQVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV 429
              +++ + V E +K    ER + +Q+++   ++      +GQ + VL++    E    V
Sbjct: 339 ATANDLPDHVPEEIKQERYERFMQVQQQISAAKLQKR---IGQTMTVLVDSLEDEYPVAV 395

Query: 430 GRS----PWLQSVV----LNSKNHNIGDIIKVRITDVKISTLYGELV 468
            RS    P +   V    ++      GD+++V ITD     L+ +L+
Sbjct: 396 ARSYADAPEIDGNVFVEDIDKSTIQPGDMLEVEITDADEYDLFAKLI 442


>gi|260427433|ref|ZP_05781412.1| conserved hypothetical protein [Citreicella sp. SE45]
 gi|260421925|gb|EEX15176.1| conserved hypothetical protein [Citreicella sp. SE45]
          Length = 417

 Score =  167 bits (422), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 119/390 (30%), Positives = 185/390 (47%), Gaps = 46/390 (11%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  M+ +    G          D +++NTC + ++A  K    + R+R  
Sbjct: 8   TLGCRLNAYETEAMKALAEEAGV--------GDAVIINTCAVTQEAVRKARQEIRRLR-- 57

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG------PQTYYRLPELLERAR 144
                +E  D  V+V GC AQ + E        V+ V+G      P+T+  L     R+ 
Sbjct: 58  -----RENPDARVIVTGCAAQIDPESFAAMDE-VDAVIGNSEKMSPETWKGL-----RSD 106

Query: 145 F----GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           F     K  V+   SV +    L  +DG   R R   A++ +Q GCD  CTFC++PY RG
Sbjct: 107 FIGDTEKVQVNDIMSVTETAGHL--IDGFGTRSR---AYVQVQNGCDHRCTFCIIPYGRG 161

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
              S     VVD+ ++L+  G  E+ L G ++ +W G  L G      DL+  +  I  +
Sbjct: 162 NSRSVPAGVVVDQIKRLVQKGFNEVVLTGVDLTSW-GADLPGTP-RLGDLVMRILRITDV 219

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            RLR ++    +  + L+ A      LMP+LHL +Q G D ILK M RRH   +  +  +
Sbjct: 220 PRLRISSIDSIEADENLMLAIATEPRLMPHLHLSLQHGDDLILKRMKRRHLRDDAIRFTE 279

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
             R +RPDI   +D I GFP ET+  F  ++ LV+         F YS R GTP + +  
Sbjct: 280 EARRLRPDITFGADIIAGFPTETEAHFENSLKLVEDCHLTWLHVFPYSSRPGTPAAKIPN 339

Query: 381 QVDENVKAERL--------LCLQKKLREQQ 402
           +V+  +  ER         + +Q+ L  QQ
Sbjct: 340 KVNGTIIKERAARLREAGDVAVQRHLAAQQ 369


>gi|93277076|ref|NP_060244.2| CDK5 regulatory subunit-associated protein 1-like 1 [Homo sapiens]
 gi|74747199|sp|Q5VV42|CDKAL_HUMAN RecName: Full=CDK5 regulatory subunit-associated protein 1-like 1
 gi|55665181|emb|CAH72474.1| CDK5 regulatory subunit associated protein 1-like 1 [Homo sapiens]
 gi|55665277|emb|CAH73074.1| CDK5 regulatory subunit associated protein 1-like 1 [Homo sapiens]
 gi|55665283|emb|CAH72467.1| CDK5 regulatory subunit associated protein 1-like 1 [Homo sapiens]
 gi|55665292|emb|CAH73706.1| CDK5 regulatory subunit associated protein 1-like 1 [Homo sapiens]
 gi|56202708|emb|CAI19768.1| CDK5 regulatory subunit associated protein 1-like 1 [Homo sapiens]
 gi|56202711|emb|CAI21023.1| CDK5 regulatory subunit associated protein 1-like 1 [Homo sapiens]
 gi|56202969|emb|CAI20280.1| CDK5 regulatory subunit associated protein 1-like 1 [Homo sapiens]
 gi|56205108|emb|CAI21687.1| CDK5 regulatory subunit associated protein 1-like 1 [Homo sapiens]
 gi|111309189|gb|AAI21021.1| CDK5 regulatory subunit associated protein 1-like 1 [Homo sapiens]
 gi|111309398|gb|AAI21022.1| CDK5 regulatory subunit associated protein 1-like 1 [Homo sapiens]
 gi|119575830|gb|EAW55426.1| CDK5 regulatory subunit associated protein 1-like 1, isoform CRA_b
           [Homo sapiens]
 gi|158256902|dbj|BAF84424.1| unnamed protein product [Homo sapiens]
          Length = 579

 Score =  167 bits (422), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 123/454 (27%), Positives = 215/454 (47%), Gaps = 35/454 (7%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           Q+ +++++GC  N  D   M     + GY+   +  DADL +LN+C ++  A +    F 
Sbjct: 64  QKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDH---FR 120

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             I+  +    K      +V+AGCV QA+  +   +      ++G Q   R+ E++E   
Sbjct: 121 NSIKKAQEENKK------IVLAGCVPQAQPRQDYLKG---LSIIGVQQIDRVVEVVEETI 171

Query: 145 FGKRVVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            G  V       +D   RL  + +D    RK  +   ++I  GC   CT+C   + RG  
Sbjct: 172 KGHSVRLLGQK-KDNGRRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNL 230

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI----- 257
            S  + ++VD A++    GVCEI L  ++  A+ G+ +         LL+ L E+     
Sbjct: 231 ASYPIDELVDRAKQSFQEGVCEIWLTSEDTGAY-GRDIG---TNLPTLLWKLVEVIPEGA 286

Query: 258 ---KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
               G+    Y   H  +M+  L         +  +LH+PVQS SD +L  M R +   +
Sbjct: 287 MLRLGMTNPPYILEHLEEMAKILNHPR-----VYAFLHIPVQSASDSVLMEMKREYCVAD 341

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
           +++++D ++   P I I++D I GFPGETD DF+ T+ LV++  +   F  ++ PR GTP
Sbjct: 342 FKRVVDFLKEKVPGITIATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTP 401

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPW 434
            + M EQV   VK +R   L +       S  D  +G+  +VL+ +   +    V  + +
Sbjct: 402 AAKM-EQVPAQVKKQRTKDLSRVF--HSYSPYDHKIGERQQVLVTEESFDSKFYVAHNQF 458

Query: 435 LQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            + V++      +G +++V I +     + G+ V
Sbjct: 459 YEQVLVPKNPAFMGKMVEVDIYESGKHFMKGQPV 492


>gi|313682137|ref|YP_004059875.1| miab-like tRNA modifying enzyme [Sulfuricurvum kujiense DSM 16994]
 gi|313154997|gb|ADR33675.1| MiaB-like tRNA modifying enzyme [Sulfuricurvum kujiense DSM 16994]
          Length = 415

 Score =  167 bits (422), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 121/435 (27%), Positives = 213/435 (48%), Gaps = 31/435 (7%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+ +F K++GC+ NV+DS  M  M     YE      +AD++++N+C +   A   V  +
Sbjct: 3   PKVYF-KTFGCRTNVFDSQVM--MSALSDYEVTEIEGEADIVIVNSCTVTNGADVSVRGY 59

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +       N   K+G  L +   GC A  +GE +     I  V  GP    ++  L+ + 
Sbjct: 60  I-------NQMDKQGKKLFLT--GCGAHTKGESLFGAGKIQGVF-GPSEKMKINTLISQE 109

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
                + D +Y ++D     +IVD    + R   AF+ IQEGC+  C++C++P+ RG   
Sbjct: 110 SRFYEIGDLNY-IDD-----AIVDEFVGKSR---AFIKIQEGCNFRCSYCIIPFVRGDAR 160

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           S   ++++++ ++L  NG  E  L G NV ++      GE    ++L+  +S I+G+ R+
Sbjct: 161 SMDEAKILEQIQRLASNGFGEFVLTGTNVGSYG----QGEGRNIAELMKKMSLIRGVRRI 216

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R  +  P  +++   +   +   L  +LH+ +Q  SD +L+ MNRR+      ++   + 
Sbjct: 217 RVGSLEPIQINESFREILSE-PWLERHLHIAIQHSSDEMLRLMNRRNRHKSDEELFGMLH 275

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           S     A+ +DFIVG PGE+D  +R  M+ +  +       F YS R GTP ++M  +V+
Sbjct: 276 S--KGFALGTDFIVGHPGESDAIWREAMENIRSLHLTHIHPFTYSKRDGTPSASMKPEVN 333

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
             V ++R+  L   +     +F  A     +EVLIE    E  + +G   +   VV+ S 
Sbjct: 334 GAVSSQRMAELNALIESNNYTFRKAMKAVPLEVLIES--GEDNRYIGYDQFYNKVVIESN 391

Query: 444 NHNIGDIIKVRITDV 458
               GD + +   +V
Sbjct: 392 EDISGDWMTLEDYEV 406


>gi|302879309|ref|YP_003847873.1| MiaB-like tRNA modifying enzyme YliG [Gallionella capsiferriformans
           ES-2]
 gi|302582098|gb|ADL56109.1| MiaB-like tRNA modifying enzyme YliG [Gallionella capsiferriformans
           ES-2]
          Length = 438

 Score =  167 bits (422), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 134/464 (28%), Positives = 223/464 (48%), Gaps = 48/464 (10%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           +P+  FV S GC     DS  +     ++GY   ++  DADL+V+NTC   + A E+   
Sbjct: 5   IPKVGFV-SLGCPKATVDSEHILTRLRAEGYIISDTYKDADLVVVNTCGFIDSAVEESLD 63

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +G         + E G   V+V GC+  A+G+ + +  P V  V GP     + E + +
Sbjct: 64  AIGE-------ALAENGK--VIVTGCLG-AKGDVVKQAHPKVLAVTGPHATDEVMEAVHQ 113

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
                    TD           +   G        A+L I EGC+  CTFC++P  RG  
Sbjct: 114 HLPKPHDPYTDL----------VPPQGIRLTPKHYAYLKISEGCNHRCTFCIIPSLRGDL 163

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLL 251
           +SR +  V+ EA  L + GV E+ ++ Q+ +A           W G+ L   K   ++L 
Sbjct: 164 VSRPVGDVMAEAESLANAGVRELLVISQDTSAYGVDVKYRTGFWGGRPL---KTRMTELA 220

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
            +L  +   VRL Y   +P       + A G +   +PYL +P Q  + RILK M R   
Sbjct: 221 VALGTLGVWVRLHYVYPYPHVDEVIPLMAQGKI---LPYLDIPFQHANQRILKLMKRPGN 277

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
           +      I + R + P++ + S FIVGFPGET+++F   +D +++    +  +F YSP  
Sbjct: 278 SDNVLARIKQWREICPELVLRSTFIVGFPGETEEEFEELLDFIEEAQLDRVGAFAYSPVE 337

Query: 372 GTPGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--G 426
           G   +++ + V   V+ E   RL+ LQ+++ E+++      +G+ + VL+++  +E    
Sbjct: 338 GATANDLPDHVPPEVQQERLARLMWLQEEISEEKLKRK---IGKTLTVLVDEVDEEGAIA 394

Query: 427 KLVGRSPWLQS-VVLNSKNH-NIGDIIKVRITDVKISTLYGELV 468
           +    +P +   V +N   H N+GD ++V ITD     L+GELV
Sbjct: 395 RSFADAPEIDGQVYINDGQHLNVGDRVEVLITDSDTHDLWGELV 438


>gi|114605652|ref|XP_001171194.1| PREDICTED: CDK5 regulatory subunit associated protein 1-like 1
           isoform 4 [Pan troglodytes]
          Length = 536

 Score =  167 bits (422), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 123/454 (27%), Positives = 215/454 (47%), Gaps = 35/454 (7%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           Q+ +++++GC  N  D   M     + GY+   +  DADL +LN+C ++  A +    F 
Sbjct: 64  QKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAED---HFR 120

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             I+  +    K      +V+AGCV QA+  +   +      ++G Q   R+ E++E   
Sbjct: 121 NSIKKAQEENKK------IVLAGCVPQAQPRQDYLKG---LSIIGVQQIDRVVEVVEETI 171

Query: 145 FGKRVVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            G  V       +D   RL  + +D    RK  +   ++I  GC   CT+C   + RG  
Sbjct: 172 KGHSVRLLGQK-KDNGRRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNL 230

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI----- 257
            S  + ++VD A++    GVCEI L  ++  A+ G+ +         LL+ L E+     
Sbjct: 231 ASYPIDELVDRAKQSFQEGVCEIWLTSEDTGAY-GRDIG---TNLPTLLWKLVEVIPEGA 286

Query: 258 ---KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
               G+    Y   H  +M+  L         +  +LH+PVQS SD +L  M R +   +
Sbjct: 287 MLRLGMTNPPYILEHLEEMAKILNHPR-----VYAFLHIPVQSASDSVLMEMKREYCVAD 341

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
           +++++D ++   P I I++D I GFPGETD DF+ T+ LV++  +   F  ++ PR GTP
Sbjct: 342 FKRVVDFLKEKVPGITIATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTP 401

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPW 434
            + M EQV   VK +R   L +       S  D  +G+  +VL+ +   +    V  + +
Sbjct: 402 AAKM-EQVPAQVKKQRTKDLSRVF--HSYSPYDHKIGERQQVLVTEESFDSKFYVAHNQF 458

Query: 435 LQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            + V++      +G +++V I +     + G+ V
Sbjct: 459 YEQVLVPKNPAFMGKMVEVDIYESGKHFMKGQPV 492


>gi|91783479|ref|YP_558685.1| hypothetical protein Bxe_A2337 [Burkholderia xenovorans LB400]
 gi|123168508|sp|Q13Z56|RIMO_BURXL RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|91687433|gb|ABE30633.1| SSU ribosomal protein S12P methylthiotransferase [Burkholderia
           xenovorans LB400]
          Length = 461

 Score =  167 bits (422), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 133/479 (27%), Positives = 219/479 (45%), Gaps = 65/479 (13%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  FV S GC   + DS ++     ++GYE   + D ADL+V+NTC   ++A ++    
Sbjct: 13  PKVGFV-SLGCPKALVDSEQIITQLRAEGYEISGTYDGADLVVVNTCGFIDEAVQESLDA 71

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVA---QAEGEEILRR-SPIVNVVVGPQTYYRLPEL 139
           +G   N +N +        V+V GC+     A G  ++    P V  V GP   + L E+
Sbjct: 72  IGEALN-ENGK--------VIVTGCLGAKKSASGSGLIEEVHPKVLAVTGP---HALGEV 119

Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           ++                D F  L    G     R   A+L I EGC+  CTFC++P  R
Sbjct: 120 MQHVHMHLP------KPHDPFVDLVPAAGVKLTPRHY-AYLKISEGCNHRCTFCIIPSMR 172

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFS 248
           G  +SR ++ V+ EA  L  +GV E+ ++ Q+ +A           W GK +   K   +
Sbjct: 173 GDLVSRPVADVMLEAENLFKSGVKELLVISQDTSAYGVDVKYRTGFWNGKPI---KTRMT 229

Query: 249 DLLYSLSEIKG----LVRLRYTTSHPR------DMSDCLIKAHGDLDVLMPYLHLPVQSG 298
           DL+ +L E+       VRL Y   +P        M++   K H     ++PYL +P Q  
Sbjct: 230 DLVGALGELAAQYGAWVRLHYVYPYPSVDEVIPMMAEGPFKGH-----VLPYLDVPFQHA 284

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
              +LK M R   A +  + + + R + PD+ I S FI GFPGET++ F+  +D + +  
Sbjct: 285 HPEVLKRMKRPANAEKVMERVKKWREMCPDLTIRSTFIAGFPGETEEQFQTLLDFIREAE 344

Query: 359 YAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI 418
             +   F YSP  G   + +   + + V+ ER     +   E         VG+ ++VL+
Sbjct: 345 LDRVGCFAYSPVEGATANELDGALPDEVREERRARFMEVAEEVSAKRIAKKVGKTLKVLV 404

Query: 419 EKHGKEKGKLVGRSP----------WLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
           ++   + G  +GR+           ++   V  SK + +GD + V+IT      L+GE+
Sbjct: 405 DEINADGG--IGRTAADAPEIDGVVYIAPAVKASKRYKVGDFVSVKITGADGHDLWGEV 461


>gi|298291698|ref|YP_003693637.1| MiaB-like tRNA modifying enzyme YliG [Starkeya novella DSM 506]
 gi|296928209|gb|ADH89018.1| MiaB-like tRNA modifying enzyme YliG [Starkeya novella DSM 506]
          Length = 452

 Score =  167 bits (422), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 141/463 (30%), Positives = 218/463 (47%), Gaps = 46/463 (9%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
            P+  FV S GC   + DS R+     S+GYE     + ADL+++NTC   + A  +  +
Sbjct: 17  APRISFV-SLGCPKALVDSERIITSLRSEGYELSRRHEGADLVIVNTCGFLDSAKAESLA 75

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +G         +KE G   V+V GC+  AE E I    P V  V GPQ Y  +   + +
Sbjct: 76  AIG-------DALKENGK--VIVTGCMG-AEPEHIRDVHPGVLAVTGPQQYESVLAAVHQ 125

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           A      V   +   D F  L    G     R   A+L I EGC+  CTFC++P  RG  
Sbjct: 126 A------VPPSH---DPFVDLVPPQGIKLTPRHY-AYLKISEGCNNRCTFCIIPKLRGDL 175

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-------RGKGLDGE-KCTFSDLLYSL 254
           +SR  + V+ EA +L+  GV E+ ++ Q+ +A+         K  D E +  F DL   L
Sbjct: 176 VSRPAADVLREAERLVAAGVKELLVISQDTSAYGIDVKYAASKWKDREVRARFLDLAREL 235

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
             +   VR+ Y   +P    D +I    D  V++PYL +P Q  S  +LK M R     +
Sbjct: 236 GTLGAWVRMHYVYPYPH--VDEVIGLMSD-GVILPYLDIPFQHASPTVLKRMKRPAAQEK 292

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
               I + R   PD+ + S FIVGFPGET+ +F   +D +D+    +   FKY P  G P
Sbjct: 293 TLARIQKWRQDCPDLTLRSTFIVGFPGETEAEFEELIDFLDEAELDRVGCFKYEPVAGAP 352

Query: 375 GSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR 431
            +++   + + VK E   R + +Q+++  +++      VG   +V+I+  G      VGR
Sbjct: 353 ANDLGAAIPDEVKEERWKRFMEVQQRVSARRLKRK---VGTRQQVIIDSVGPTVA--VGR 407

Query: 432 S----PWLQSV--VLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           S    P +     V + +   +G+I+ V+I       L+G  V
Sbjct: 408 SKADAPEIDGSVHVASRRPLRVGEIVTVKIERADAYDLHGMAV 450


>gi|71908364|ref|YP_285951.1| hypothetical protein Daro_2751 [Dechloromonas aromatica RCB]
 gi|123774323|sp|Q47CF0|RIMO_DECAR RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|71847985|gb|AAZ47481.1| SSU ribosomal protein S12P methylthiotransferase [Dechloromonas
           aromatica RCB]
          Length = 440

 Score =  167 bits (422), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 131/465 (28%), Positives = 221/465 (47%), Gaps = 50/465 (10%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           VP   FV S GC     D+ R+     ++GYE   S D++DL+++NTC   + A E+   
Sbjct: 7   VPTVGFV-SLGCPKASSDAERILTKLRAEGYEISPSYDNSDLVIVNTCGFIDAAVEESLD 65

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +G   N +N +        V+V GC+  A+G+ +    P V  V GP     +      
Sbjct: 66  AIGEALN-ENGK--------VIVTGCLG-AKGDIVQTTHPAVLAVTGPHAADEV------ 109

Query: 143 ARFGKRVVDTDYS-VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
                 +V T      D +  L +   G        A+L I EGC+  CTFC++P  RG 
Sbjct: 110 ----MGIVHTHLPKPHDPYSDL-VPPQGVRLTPDHFAYLKISEGCNHSCTFCIIPSLRGP 164

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDL 250
            +SR +  V+ EA  L   GV EI ++ Q+ +A           W GK +   K    +L
Sbjct: 165 LVSRPVGDVLAEAENLARAGVKEILVISQDTSAYGVDLKYRTAFWGGKPV---KSRLKEL 221

Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
             +L+ +   VRL Y   +P       + A G +   +PYL +P Q  S +ILK+M R  
Sbjct: 222 CEALASLGIWVRLHYVYPYPSVDDVIPLMAEGKI---LPYLDVPFQHASPKILKAMKRPA 278

Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370
           +A    + I + R + P+I I S FI GFPGET++DF   +  ++     +  +F YSP 
Sbjct: 279 SAENTLERIAKWREICPEIVIRSTFITGFPGETEEDFDQLIQFLEDAKLDRVGAFAYSPV 338

Query: 371 LGTPGSNMLEQVDENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-- 425
            G   + + E + E+V+ +R   L+ +Q+ +   +++   A +  +I+VL+++  +E   
Sbjct: 339 DGAKANELGELLPEDVREDRRRWLMQVQEDISADKLA---AKIDTVIQVLVDEVDEEGTI 395

Query: 426 GKLVGRSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468
            +    +P +  +V    + +   GD ++V++ D     LY ++V
Sbjct: 396 ARSKADAPEIDGLVYLDGHFDAQPGDFLQVKVIDADHHDLYAQVV 440


>gi|7020375|dbj|BAA91102.1| unnamed protein product [Homo sapiens]
          Length = 579

 Score =  167 bits (422), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 123/454 (27%), Positives = 215/454 (47%), Gaps = 35/454 (7%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           Q+ +++++GC  N  D   M     + GY+   +  DADL +LN+C ++  A +    F 
Sbjct: 64  QKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDH---FR 120

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             I+  +    K      +V+AGCV QA+  +   +      ++G Q   R+ E++E   
Sbjct: 121 NSIKKAQEENKK------IVLAGCVPQAQPRQDYLKG---LSIIGVQQIDRVVEVVEETI 171

Query: 145 FGKRVVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            G  V       +D   RL  + +D    RK  +   ++I  GC   CT+C   + RG  
Sbjct: 172 KGHSVRLLGQK-KDNGRRLGGARLDLPKIRKNPLIEIISISTGCLNACTYCKTKHARGNL 230

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI----- 257
            S  + ++VD A++    GVCEI L  ++  A+ G+ +         LL+ L E+     
Sbjct: 231 ASYPIDELVDRAKQSFQEGVCEIWLTSEDTGAY-GRDIG---TNLPTLLWKLVEVIPEGA 286

Query: 258 ---KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
               G+    Y   H  +M+  L         +  +LH+PVQS SD +L  M R +   +
Sbjct: 287 MLRLGMTNPPYILEHLEEMAKILNHPR-----VYAFLHIPVQSASDSVLMEMKREYCVAD 341

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
           +++++D ++   P I I++D I GFPGETD DF+ T+ LV++  +   F  ++ PR GTP
Sbjct: 342 FKRVVDFLKEKVPGITIATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTP 401

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPW 434
            + M EQV   VK +R   L +       S  D  +G+  +VL+ +   +    V  + +
Sbjct: 402 AAKM-EQVPAQVKKQRTKDLSRVF--HSYSPYDHKIGERQQVLVTEESFDSKFYVAHNQF 458

Query: 435 LQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            + V++      +G +++V I +     + G+ V
Sbjct: 459 YEQVLVPKNPAFMGKMVEVDIYESGKHFMKGQPV 492


>gi|49475606|ref|YP_033647.1| hypothetical protein BH08410 [Bartonella henselae str. Houston-1]
 gi|81648389|sp|Q6G5E0|RIMO_BARHE RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|49238413|emb|CAF27640.1| hypothetical protein BH08410 [Bartonella henselae str. Houston-1]
          Length = 437

 Score =  167 bits (422), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 139/460 (30%), Positives = 215/460 (46%), Gaps = 47/460 (10%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  FV S GC   + DS R+     S+GYE       ADL+++NTC            F
Sbjct: 4   PRISFV-SLGCPKALVDSERIITSLRSEGYEISRKHQGADLVIVNTC-----------GF 51

Query: 84  LGRIRNLKNSRIKEG--GDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           L   RN   + I E    +  V+V GC+  A+ + I +  P V  + GPQ Y  + + + 
Sbjct: 52  LDSARNESLANIDEALKKNGKVIVTGCLG-ADPDVIRQVYPNVLAITGPQAYESVIQAVH 110

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
            A            V D F  L    G     R   A+L I EGC   C+FC++P  RG 
Sbjct: 111 TA---------IPPVHDPFIDLVPPQGIRLTPRHY-AYLKISEGCSNRCSFCIIPTLRGN 160

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDL 250
            +SR +S V+ EA KL+  GV E+ ++ Q+ +A           W+ + +   K  F DL
Sbjct: 161 LMSRPISDVLREAEKLVQAGVKELLVISQDTSAYGIDLKYLETPWKDRTV---KTKFFDL 217

Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
              L  +   +R+ Y   +P    D +I+   +  +L PYL +P Q  S  +L++M R  
Sbjct: 218 CRELGNMGIWIRMHYVYPYPH--VDDVIEFMAEKKIL-PYLDIPFQHASPTVLRNMKRPA 274

Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370
              +  + I++ R + PD+ + S FIVGFPGET +DF   ++ +D++   +A  FKY   
Sbjct: 275 LVKKINRRIEKWRIICPDLTLRSTFIVGFPGETHEDFNILLEWLDEVKIERAGCFKYEAV 334

Query: 371 LGTPGSNM-LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGK-EKGK 427
            G   +++ LE + E VK  R      K ++         VG+ ++VLI E  GK  KG+
Sbjct: 335 KGAVANDLGLESIPEEVKENRWHRFMAKQQKISTHLLKKKVGKRLQVLIDESQGKIAKGR 394

Query: 428 LVGRSPWLQSVVLNSKNH--NIGDIIKVRITDVKISTLYG 465
               +P +  VV  S      +G+ + V+I       LYG
Sbjct: 395 SQYDAPEIDGVVHISSRRPLRVGEFVTVKIERSDAYDLYG 434


>gi|319899510|ref|YP_004159607.1| hypothetical protein BARCL_1386 [Bartonella clarridgeiae 73]
 gi|319403478|emb|CBI77058.1| conserved protein of unknown function [Bartonella clarridgeiae 73]
          Length = 427

 Score =  167 bits (422), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 112/366 (30%), Positives = 186/366 (50%), Gaps = 21/366 (5%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           ++GC++N Y+S  +     S G +++   D A  I+ NTC +  +A  +    + + R  
Sbjct: 7   TFGCRLNSYESEIIRKESTSAGLDKLK--DGA--IIFNTCAVTVEAVRQAKQAIRKAR-- 60

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEI-LRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149
                +E  +  ++V GC AQ EG++  L +   V++++G +         +R  FG   
Sbjct: 61  -----RENPNARIIVTGCAAQTEGKKFSLMKE--VDLILGNEEKLHAHSYCQRPDFGINH 113

Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVT-AFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
            D    V +  E   I     N   G T AF+ +Q GCD  CTFC++PY+RG   S  + 
Sbjct: 114 -DEKIRVNNIMEVNKIAPHMINALEGRTRAFVQVQNGCDHRCTFCIIPYSRGPSRSVPMG 172

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS-LSEIKGLVRLRYTT 267
            ++++ ++ + NG+ EI L G ++ ++ G  L G K T   L+ + L  +  L RLR ++
Sbjct: 173 IIIEQIKQFVGNGIQEIVLTGVDLTSY-GPDLPG-KITLGKLVSTILHHVPDLPRLRLSS 230

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
               +    LI        +MPYLHL +Q+G + ILK M RRH      Q    +R+ RP
Sbjct: 231 IDSIEADQELINLLAYEKRIMPYLHLSLQAGDNMILKRMKRRHLRENAIQFCQNLRAKRP 290

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
            +   +D I GFP ET++ F+ ++ L+++ G      F +SPR GTP + M +   E +K
Sbjct: 291 TMVYGADLIAGFPTETEEMFQNSLTLINECGLTYLHVFPFSPREGTPAARMPQINRETIK 350

Query: 388 --AERL 391
             AE+L
Sbjct: 351 IRAEKL 356


>gi|221212797|ref|ZP_03585773.1| conserved hypothetical protein [Burkholderia multivorans CGD1]
 gi|221167010|gb|EED99480.1| conserved hypothetical protein [Burkholderia multivorans CGD1]
          Length = 453

 Score =  167 bits (422), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 133/477 (27%), Positives = 217/477 (45%), Gaps = 61/477 (12%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  FV S GC   + DS ++     ++GYE   + D ADL+V+NTC   ++A ++    
Sbjct: 5   PKVGFV-SLGCPKALVDSEQIITQLRAEGYEISGTYDGADLVVVNTCGFIDEAVQESLDA 63

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVA---QAEGEEILRR-SPIVNVVVGPQTYYRLPEL 139
           +G         + E G   V+V GC+     A G  ++    P V  V GP     + + 
Sbjct: 64  IGEA-------LTENGK--VIVTGCLGAKKSASGSGLIEEVHPKVLAVTGPHAVGEVMQA 114

Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           +  +   K          D F  L +   G        A+L I EGC+  CTFC++P  R
Sbjct: 115 V-HSHLPKP--------HDPFVDL-VPPAGIKLTPRHYAYLKISEGCNHRCTFCIIPSMR 164

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFS 248
           G  +SR +++V+ EA  L  +GV E+ ++ Q+ +A           W GK +   K   +
Sbjct: 165 GDLVSRPVAEVMLEAENLFKSGVKELLVISQDTSAYGVDVKYRTGFWNGKPI---KTRMT 221

Query: 249 DLLYSLSEIKG----LVRLRYTTSHPRD------MSDCLIKAHGDLDVLMPYLHLPVQSG 298
           DL+ +L E+       VRL Y   +P        M++   K H     ++PYL +P Q  
Sbjct: 222 DLVAALGELAAQYGAWVRLHYVYPYPSVDEVIPLMAEGPFKGH-----VLPYLDVPFQHA 276

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
              +LK M R   A +  + + + R + PD+ I S FI GFPGET++ F   +D + +  
Sbjct: 277 HPEVLKRMKRPANAEKVLERVQKWREICPDLTIRSTFIAGFPGETEEQFETLLDFIREAE 336

Query: 359 YAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI 418
             +   F YSP  G   + +   + ++V+ ER     +   E         VG+ ++VLI
Sbjct: 337 LDRVGCFAYSPVEGASANELDGALPDDVREERRARFMEVAEEVSARRIARKVGKTLKVLI 396

Query: 419 EKHGKEK--GKLVGRSPWLQSVVL------NSKNHNIGDIIKVRITDVKISTLYGEL 467
           ++   E   G+    +P +  VV        SK + +GD + V+IT      L+GE+
Sbjct: 397 DEVSDEGGIGRTAADAPEIDGVVYVEPATKASKRYKVGDFVSVKITGADGHDLWGEV 453


>gi|146279012|ref|YP_001169171.1| MiaB-like tRNA modifying enzyme [Rhodobacter sphaeroides ATCC
           17025]
 gi|145557253|gb|ABP71866.1| MiaB-like tRNA modifying enzyme [Rhodobacter sphaeroides ATCC
           17025]
          Length = 425

 Score =  167 bits (422), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 113/357 (31%), Positives = 179/357 (50%), Gaps = 34/357 (9%)

Query: 30  KSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRN 89
            + GC++N Y++  M+++  + G      +D+A  +V+NTC +  +A  K    + R+R 
Sbjct: 7   STLGCRLNAYETEAMKELASAAG------VDNA--VVVNTCAVTAEAVRKAKQEIRRLR- 57

Query: 90  LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG------PQTYYRL-PELLER 142
                 +E     ++V GC AQ E        P V+ V+G        T+  + P+L+  
Sbjct: 58  ------RENPGATIIVTGCAAQTE-PATFSAMPEVDRVIGNTEKMQASTWAAMAPDLIGE 110

Query: 143 ARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
               +RV VD   SV +    L  +DG + R R   A++ +Q GCD  CTFC++PY RG 
Sbjct: 111 T---ERVQVDDILSVRETAGHL--IDG-FGRHR---AYVQVQNGCDHRCTFCIIPYGRGN 161

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
             S     VV++ R+L+D G  E+ L G ++ +W G  L  +      ++  L  +  L 
Sbjct: 162 SRSVPAGVVVEQIRRLVDRGFAEVVLTGVDLTSW-GADLPAQPRLGDLVMRILRLVPDLA 220

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           RLR ++    +  + L+ A      LMP+LHL +Q G D ILK M RRH   +  +  + 
Sbjct: 221 RLRISSIDSIEADEALMGAIATEPRLMPHLHLSLQHGDDLILKRMKRRHLRDDAIRFCEE 280

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
            R +RPDI   +D I GFP E++  F  ++ LV + G      F +SPR GTP + M
Sbjct: 281 ARRLRPDIVFGADIIAGFPTESEQAFENSLKLVGECGLTFLHVFPFSPRTGTPAARM 337


>gi|330985158|gb|EGH83261.1| ribosomal protein S12 methylthiotransferase [Pseudomonas syringae
           pv. lachrymans str. M301315]
          Length = 443

 Score =  167 bits (422), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 143/467 (30%), Positives = 230/467 (49%), Gaps = 64/467 (13%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC   + DS R+      +GYE V + +DAD++V+NTC   + A  +    +G     
Sbjct: 12  SLGCPKALVDSERILTQLRMEGYEVVATYEDADVVVVNTCGFIDTAKAESLEVIGE---- 67

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               IKE G   V+V GC+   +   I    P V  V GPQ Y             ++VV
Sbjct: 68  ---AIKENGK--VIVTGCMG-VDANVIRDVHPSVLSVTGPQQY-------------EQVV 108

Query: 151 DTDYSV----EDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           +  + V    +D    + +V   G        A+L I EGC+  C+FC++P  RG  +SR
Sbjct: 109 NAVHDVVPPRKDHNPLIDLVPPQGVKLTPRHYAYLKISEGCNHSCSFCIIPSMRGKLVSR 168

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNA------WRGKGLDGE--KCTFSDLLYSLSEI 257
            +  V+DEA++L+ +GV E+ ++ Q+ +A      +R    DG+  K   ++L  +L  +
Sbjct: 169 PVGDVLDEAKRLVKSGVKELLVISQDTSAYGVDVKYRTGFWDGQPVKTRMTELCQALGSM 228

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
              VRL Y   +P       + A G    ++PYL +P Q  S +ILK M R   A+E + 
Sbjct: 229 GVWVRLHYVYPYPHVDELIPLMAAGK---ILPYLDIPFQHASPKILKLMKR--PAFEDKT 283

Query: 318 IIDRIRSVR---PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
           +  RI++ R   PD+ I S FIVGFPGET++DF+  +D + +    +   F+YSP  G P
Sbjct: 284 LA-RIKNWREQCPDLIIRSTFIVGFPGETEEDFQYLLDWLTEAQLDRVGCFQYSPVEGAP 342

Query: 375 GSNMLEQ--VDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV 429
            +N+L+   V ++VK    +R +  Q+ +   ++      +G+ IEVLI++   ++G  V
Sbjct: 343 -ANLLDAAIVPDDVKQDRWDRFMAHQQAISAARLQMK---IGKEIEVLIDEV-DDRGA-V 396

Query: 430 GR----SPWLQSVVL----NSKNHNIGDIIKVRITDVKISTLYGELV 468
           GR    +P +   V            GD I  R+TD     L+ E++
Sbjct: 397 GRCFFDAPEIDGNVFIGLEEGSTVQPGDKIMCRVTDADEYDLWAEML 443


>gi|169795680|ref|YP_001713473.1| hypothetical protein ABAYE1576 [Acinetobacter baumannii AYE]
 gi|215483167|ref|YP_002325374.1| RNA modification enzyme, MiaB family protein [Acinetobacter
           baumannii AB307-0294]
 gi|301512089|ref|ZP_07237326.1| ribosomal protein S12 methylthiotransferase [Acinetobacter
           baumannii AB058]
 gi|332852498|ref|ZP_08434237.1| ribosomal protein S12 methylthiotransferase RimO [Acinetobacter
           baumannii 6013150]
 gi|332871298|ref|ZP_08439847.1| ribosomal protein S12 methylthiotransferase RimO [Acinetobacter
           baumannii 6013113]
 gi|238065266|sp|B7H1U1|RIMO_ACIB3 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|238065271|sp|B0V6E8|RIMO_ACIBY RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|169148607|emb|CAM86473.1| conserved hypothetical protein [Acinetobacter baumannii AYE]
 gi|213988942|gb|ACJ59241.1| RNA modification enzyme, MiaB family protein [Acinetobacter
           baumannii AB307-0294]
 gi|332729200|gb|EGJ60543.1| ribosomal protein S12 methylthiotransferase RimO [Acinetobacter
           baumannii 6013150]
 gi|332731582|gb|EGJ62868.1| ribosomal protein S12 methylthiotransferase RimO [Acinetobacter
           baumannii 6013113]
          Length = 447

 Score =  167 bits (422), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 133/467 (28%), Positives = 220/467 (47%), Gaps = 50/467 (10%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  FV S GC   + DS R+     ++GY+  +  D ADL+V+NTC   E A ++    
Sbjct: 4   PKVGFV-SLGCPKALVDSERILTQLKTEGYQVASDYDGADLVVVNTCGFIESAVQESLDA 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G   + +N R        V+V GC+ + E ++I +  P V  V G   Y  + E +   
Sbjct: 63  IGEAMS-ENGR--------VIVTGCLGKDE-DKIRQMHPNVLKVTGAAAYQDVMEAVHEY 112

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
                         + F  L + + G        A+L I EGC+  CTFC++P  RG  +
Sbjct: 113 VPAP-------PKHNPFIDL-VPEQGIRLTPKHYAYLKISEGCNHRCTFCIIPSMRGDLV 164

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLY 252
           SR +  V++EA  L   GV EI ++ Q+ +A           W G+ +   K  F D+  
Sbjct: 165 SRPVGSVLEEAAALKRAGVKEILVISQDTSAYGVDTKYKLDFWNGQPV---KTKFFDMCE 221

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
           +L ++   VRL Y   +P   +   + A G +   +PYL +P Q  S R+LK M R   +
Sbjct: 222 ALGQLGIWVRLHYVYPYPHVDAVIDLMAQGKI---LPYLDIPFQHASPRVLKLMKRPAHS 278

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
               + I   R   P++ I S F+VGFPGET++DF+  +D + +    +   F YSP  G
Sbjct: 279 ENTLEKIKLWREKCPNLVIRSTFVVGFPGETEEDFQILLDWLVEAQLDRVGCFTYSPVEG 338

Query: 373 TPGSNMLEQVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV 429
              +++ + V E +K    ER + +Q+++   ++      +GQ + VL++    E    V
Sbjct: 339 ATANDLPDHVPEEIKQERYERFMQVQQQISAAKLQKR---IGQTMTVLVDSLEDEYPVAV 395

Query: 430 GRS----PWLQSVV----LNSKNHNIGDIIKVRITDVKISTLYGELV 468
            RS    P +   V    ++      GD+++V ITD     L+ +L+
Sbjct: 396 ARSYADAPEIDGNVFVEDIDKSTIQPGDMLEVEITDADEYDLFAKLI 442


>gi|171319694|ref|ZP_02908785.1| MiaB-like tRNA modifying enzyme YliG [Burkholderia ambifaria MEX-5]
 gi|171095074|gb|EDT40085.1| MiaB-like tRNA modifying enzyme YliG [Burkholderia ambifaria MEX-5]
          Length = 453

 Score =  167 bits (422), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 133/477 (27%), Positives = 218/477 (45%), Gaps = 61/477 (12%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  FV S GC   + DS ++     ++GYE   + D ADL+V+NTC   ++A ++    
Sbjct: 5   PKVGFV-SLGCPKALVDSEQIITQLRAEGYEISGTYDGADLVVVNTCGFIDEAVQESLDA 63

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCV---AQAEGEEILRR-SPIVNVVVGPQTYYRLPEL 139
           +G         + E G   V+V GC+   + A G  ++    P V  V GP     + + 
Sbjct: 64  IGEA-------LTENGK--VIVTGCLGAKSSASGSNLIEEVHPKVLAVTGPHAVGEVMQA 114

Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           +  +   K          D F  L +   G        A+L I EGC+  CTFC++P  R
Sbjct: 115 V-HSHLPKP--------HDPFVDL-VPAAGIKLTPRHYAYLKISEGCNHRCTFCIIPSMR 164

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFS 248
           G  +SR +++V+ EA  L  +GV E+ ++ Q+ +A           W GK +   K   +
Sbjct: 165 GDLVSRPVAEVMLEAENLFKSGVKELLVISQDTSAYGVDVKYRTGFWNGKPI---KTRMT 221

Query: 249 DLLYSLSEIKG----LVRLRYTTSHPRD------MSDCLIKAHGDLDVLMPYLHLPVQSG 298
           DL+ +L E+       VRL Y   +P        M++   K H     ++PYL +P Q  
Sbjct: 222 DLVAALGELAARYGAWVRLHYVYPYPSVDEVIPLMAEGPFKGH-----VLPYLDVPFQHA 276

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
              +LK M R   A +  + + + R + PD+ I S FI GFPGET++ F   +D + +  
Sbjct: 277 HPDVLKRMKRPANAEKVLERVQKWRELCPDLTIRSTFIAGFPGETEEQFETLLDFIREAE 336

Query: 359 YAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI 418
             +   F YSP  G   + +   + ++V+ ER     +   E         VG+ ++VLI
Sbjct: 337 LDRVGCFAYSPVEGATANELDGALPDDVREERRARFMEVAEEVSAKRIQRKVGKTLKVLI 396

Query: 419 EKHGKEK--GKLVGRSPWLQSVVL------NSKNHNIGDIIKVRITDVKISTLYGEL 467
           ++   E   G+    +P +  VV        SK + +GD + V+IT      L+GE+
Sbjct: 397 DEVSDEGGIGRTAADAPEIDGVVYVEPATKASKRYKVGDFVSVKITGADGHDLWGEV 453


>gi|297569860|ref|YP_003691204.1| MiaB-like tRNA modifying enzyme [Desulfurivibrio alkaliphilus AHT2]
 gi|296925775|gb|ADH86585.1| MiaB-like tRNA modifying enzyme [Desulfurivibrio alkaliphilus AHT2]
          Length = 470

 Score =  166 bits (421), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 129/440 (29%), Positives = 213/440 (48%), Gaps = 27/440 (6%)

Query: 25  QRFFVKSYGCQMNVYDSLR-MEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           +R  V + GC++N Y++   + ++   +  E V   + A++ V+NTC +  KA  +    
Sbjct: 20  KRVAVTTLGCKVNQYETAAFLSELADCKEVEIVPFGEAAEVYVINTCAVTAKAGAQS--- 76

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
               R L     K GG  LVV  GC AQ   +E+L  +     +VG         L+  A
Sbjct: 77  ----RQLIRRAAKRGGSRLVVT-GCYAQVAPQEVLELTARPLCIVGNSHK----NLVTEA 127

Query: 144 RFGKRVVDTDYSVED-----KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
                  D +  + D     +   L +  GG +R R V   L +Q+GC + C++C+VP +
Sbjct: 128 VLAASPCDLEMYLADMAGCREVAPLVVRRGG-SRTRAV---LKVQDGCSQRCSYCIVPIS 183

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC-TFSDLLYSLSEI 257
           RG   S +  +V+D+A      G  E+ L G ++  +   GLD +       LL  L   
Sbjct: 184 RGPSRSVTPERVLDQAEIYAGQGYREVVLTGIHLGHY---GLDLQPTLPLVGLLEKLLAR 240

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
           +  +R R ++  PR++S  L++       L P+LH+P+QSG DRIL +MNR +   ++  
Sbjct: 241 RLPLRYRLSSLEPREVSPELLELVAAEAALQPHLHIPLQSGDDRILAAMNRPYRRQDFAA 300

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
           +++R   V P  AI  D + GFPGE D  F  T+ L+ ++  +    F YSPR GTP + 
Sbjct: 301 VVNRCAQVLPAAAIGVDVLAGFPGEDDAAFANTLALLKELPVSYLHVFPYSPRPGTPAAK 360

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQ 436
           + +QV E VK  R   L+   R+++ +F    +  +  VL+E   ++  K L G +    
Sbjct: 361 LPDQVPEKVKQRRAARLRNLDRQKREAFYRRHLDTVRPVLVEGGDQDAAKALRGFTDNYI 420

Query: 437 SVVLNSKNHNIGDIIKVRIT 456
            V L         +I+VR++
Sbjct: 421 PVQLPDGAARGNQVIRVRLS 440


>gi|148553566|ref|YP_001261148.1| ribosomal protein S12 methylthiotransferase [Sphingomonas wittichii
           RW1]
 gi|238066606|sp|A5V3Z4|RIMO_SPHWW RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|148498756|gb|ABQ67010.1| MiaB-like tRNA modifying enzyme YliG [Sphingomonas wittichii RW1]
          Length = 452

 Score =  166 bits (421), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 131/459 (28%), Positives = 208/459 (45%), Gaps = 43/459 (9%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P +  + S GC  N+ DS R+     S GY        AD++++NTC   + A E+    
Sbjct: 13  PPKIGMVSLGCPKNLVDSERILTKLRSDGYGLSPDYAGADVVLVNTCGFLDSAKEESLEA 72

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G         I E G   V+V GC+   E E I  R P V  + G   Y    E++   
Sbjct: 73  IGEA-------IAENGR--VIVTGCMGD-EAEAIRARFPKVLAITGAHQYE---EVVGAV 119

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
                V  + Y        L +    Y+       +L I EGC+  C+FC++P  RG  +
Sbjct: 120 HDAAPVPPSPYVDLVPEAGLKLTPRHYS-------YLKISEGCNHRCSFCIIPSIRGDLV 172

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-----------GE-KCTFSDLL 251
           SR    ++ EA KL+  G  E+ ++ Q+ +A+   GLD           GE +   +DL 
Sbjct: 173 SRRPDAILREAEKLVAAGTRELLVISQDTSAY---GLDLRHKAFPLKGGGEVRAHMTDLA 229

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
             L ++   VRL Y   +P       + A G   ++ PYL +P Q  S  +LK+M R   
Sbjct: 230 RELGKLGAWVRLHYVYPYPHVDHVIPLMAEG---LITPYLDIPFQHASPPVLKAMKRPAN 286

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
             +  + I   R++ PDIAI S F+VGFPGET++DF+  +D +D+    +  +F++ P  
Sbjct: 287 EAKVLERIAGWRAICPDIAIRSTFVVGFPGETEEDFQYLLDWLDEAQLDRVGAFRFEPVA 346

Query: 372 GTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK---HGKEKGKL 428
           G   +++   V E VK ER   +  K      +   A VG+ ++V+I+     G   G+ 
Sbjct: 347 GAAANDLPGAVPEEVKEERYARIMAKTAAISAAKLAAKVGRTLDVIIDAVDDEGGATGRS 406

Query: 429 VGRSPWLQSVVL--NSKNHNIGDIIKVRITDVKISTLYG 465
              +P +   V   ++     G I+ V I D     L+G
Sbjct: 407 QADAPEIDGEVHLRDAGGLEPGAIVAVEIEDADEHDLFG 445


>gi|218886497|ref|YP_002435818.1| RNA modification enzyme, MiaB family [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218757451|gb|ACL08350.1| RNA modification enzyme, MiaB family [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 462

 Score =  166 bits (421), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 134/461 (29%), Positives = 211/461 (45%), Gaps = 47/461 (10%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           FF  + GC++N Y++  + + + ++G+       DAD++++N+C +  +A   V   + R
Sbjct: 6   FFALTLGCKINQYETEAVREAWLARGWREAADPADADVLLINSCAVTARAVADVRQAVAR 65

Query: 87  I-RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL----PEL-- 139
           + R   + RI        VV GC AQ   E+I    P V+ VVG Q    L    PE   
Sbjct: 66  MHRAAPHGRI--------VVTGCAAQVLREDIAA-LPGVSDVVGQQAKVSLLRYDPEGGA 116

Query: 140 --LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197
                   G    D   + +  F    I   G+ R R V   L +Q+GC   CT+C+VP 
Sbjct: 117 AGAHEPDGGGDGGDDLAAGDTAFPAFRI--DGFTRSRPV---LKVQDGCSHRCTYCIVPL 171

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL--- 254
            RG   SR   + + EAR+L+D G  E+ + G N+  + G+ L G    F DLL  L   
Sbjct: 172 ARGAARSRDPREALAEARRLLDAGFRELIVSGVNLRQY-GRDLPGGGPDFWDLLAFLERE 230

Query: 255 --SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
              +  G  RLR ++  P  + +  +    +  ++ P LHL +QSGS  +L+ M R H  
Sbjct: 231 LAPQWAGRARLRISSLEPGQLGERALDVLAESRLVAPQLHLSLQSGSPGVLRRMGRGH-- 288

Query: 313 YEYRQIIDRIRS---VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369
           Y    ++D +R    V P   + +D + GFPGE D +F  T+D V  +    A  F YS 
Sbjct: 289 YRPEPLLDFVRELAEVWPLFGLGADILTGFPGEADAEFGETLDFVGALPLTYAHVFPYSR 348

Query: 370 RLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV 429
           R GTP + M  Q+ + VK  R   L+  +  ++ +F    + +   +L+   G    K V
Sbjct: 349 RPGTPAAVMEGQLPQEVKKRRAAELRGAVAVKKATFLQRLLDE-PRLLVAPEGARGVKGV 407

Query: 430 -----------GRSPWLQSVVLNSKNHNIGDIIKVRITDVK 459
                      GR P  Q+     +    GD++ VR   V+
Sbjct: 408 CEYYAECRFTGGRRPAAQA-GQGGEQAGPGDLVAVRPLAVE 447


>gi|88800724|ref|ZP_01116282.1| 2-methylthioadenine synthetase [Reinekea sp. MED297]
 gi|88776500|gb|EAR07717.1| 2-methylthioadenine synthetase [Reinekea sp. MED297]
          Length = 382

 Score =  166 bits (421), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 109/349 (31%), Positives = 174/349 (49%), Gaps = 37/349 (10%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N  DS R+     ++GY  V S ++AD++++NTC   + A ++    +G   N 
Sbjct: 28  SLGCPKNTVDSERIITQLRAEGYNIVPSYNNADVVIVNTCGFIDSAVQESLDTIGEALN- 86

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
           KN +        V+V GC+   E ++I    P V  V GP  Y  +          K+V 
Sbjct: 87  KNGK--------VLVTGCLGAKE-DDIREVHPNVLAVTGPHAYDHV---------VKQVH 128

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
           +      D F  L +   G        A+L I EGC+  CTFC++P  RG  +SR +SQV
Sbjct: 129 EVVPPKHDPFTSL-VPKAGVKLTPKHYAYLKISEGCNHRCTFCIIPSFRGDLVSRPISQV 187

Query: 211 VDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYSLSEIKG 259
           + EA  L+++G  E+ ++ Q+ +A           W+G+ +   K    +L   L ++  
Sbjct: 188 LSEAESLVNHGTKELLVISQDTSAYGVDTKYREDFWKGRAV---KTRMKELCEELGQLDA 244

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
            VR+ Y   +P    D +I    + + ++PYL +P Q  S  +LK+M R   A +    I
Sbjct: 245 WVRMHYVYPYPH--VDDIIPLMAE-NRILPYLDIPFQHASPSVLKNMKRPAHAEKVLNRI 301

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
            + R + PDI + S FIVGFPGET+DDF+  +D +++    +  +FKYS
Sbjct: 302 HQWRDICPDITLRSTFIVGFPGETEDDFQMLLDFLEEAQLDRVGAFKYS 350


>gi|325282557|ref|YP_004255098.1| Ribosomal protein S12 methylthiotransferase rimO [Deinococcus
           proteolyticus MRP]
 gi|324314366|gb|ADY25481.1| Ribosomal protein S12 methylthiotransferase rimO [Deinococcus
           proteolyticus MRP]
          Length = 500

 Score =  166 bits (421), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 131/479 (27%), Positives = 222/479 (46%), Gaps = 55/479 (11%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC   + DS R+     ++GYE   + +DA  +++NTC     A E+  S +G   + 
Sbjct: 21  SLGCPKALVDSERILTQLRAEGYEVAPNYEDAQAVIVNTCGFITPAIEESLSAIGEALDA 80

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG---------------PQTYYR 135
                       V+V GC+ +   E+I+ R P V+ + G               P     
Sbjct: 81  TGK---------VIVTGCLGE-RPEKIMERHPKVSAITGSEAVDDVMGHVRDLLPVNQDA 130

Query: 136 LPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT---AFLTIQEGCDKFCTF 192
              LL     G R V    +V  + E+    D      R      A++ + EGC+  C F
Sbjct: 131 FTGLLPVPAPGMRPVAAP-AVGPEREQTRHGDVFAPSVRLTPRHYAYVKVAEGCNHTCAF 189

Query: 193 CVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA------WRGKGLDGE--K 244
           C++P  RG+++SR    V+ EA +L+  G  E+ ++ Q+ +A      +R     GE  +
Sbjct: 190 CIIPKLRGLQVSRDAGSVLYEAFRLVAGGTKELVVIAQDTSAYGVDIRYRESEFQGEQVR 249

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304
              +DL   L E+   VR+ Y   +P       + A G    ++PYL +P+Q  S +IL+
Sbjct: 250 AHLTDLAEKLGELGAWVRMHYVYPYPHVDRIVELMAQGK---ILPYLDVPLQHASPKILR 306

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
           +M RR  A +    I R R + P++ I S FIVGFPGET++DF+  +D ++     +  +
Sbjct: 307 AM-RRPGAGKQLDTIRRWREICPELTIRSTFIVGFPGETEEDFQELLDFLEAAQLDRVGA 365

Query: 365 FKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE 424
           F YS       + +   V E VK ERL    +  +   ++     VG++++V+I+++  +
Sbjct: 366 FTYSEVPEADANALPGAVPEEVKEERLARFMEVAQRISMARLAQKVGRVMDVIIDEYNDD 425

Query: 425 KG-----KLVGRS----PWLQSVVL-----NSKNHNIGDIIKVRITDVKISTLYGELVV 469
           +G     +L+GR+    P +   V       +    +GDI++ RI D     L+GE+V 
Sbjct: 426 EGDQPGTRLIGRTKGDAPGIDGQVYLYAGDFAGQIKVGDIVQARIEDSDEYDLFGEVVA 484


>gi|313674192|ref|YP_004052188.1| miab-like tRNA modifying enzyme [Marivirga tractuosa DSM 4126]
 gi|312940890|gb|ADR20080.1| MiaB-like tRNA modifying enzyme [Marivirga tractuosa DSM 4126]
          Length = 439

 Score =  166 bits (421), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 110/392 (28%), Positives = 192/392 (48%), Gaps = 17/392 (4%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N  ++  +  MF ++GYE+V+   + D+ ++NTC + E A +K    +   + +
Sbjct: 8   TLGCKLNFSETSSISRMFENRGYEKVDFQANPDIFIINTCSVTENADKKCKKVVKEAKKI 67

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPI--VNVVVGPQTYYRLPELLERARFGKR 148
                    D  V + GC AQ + +EI   S I  V+ V+G    ++L + L+   F K+
Sbjct: 68  -------NPDAFVTIIGCYAQLKPKEI---SEIKGVDAVLGAAEKFQLIDKLDG--FTKK 115

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
             D    +    +     +  ++       FL +Q+GC+  C FC +P  RG   S ++ 
Sbjct: 116 --DAPQVLASDIKEAKSFNNAFSINDRTRTFLKVQDGCNYHCAFCTIPLARGKSRSDTIE 173

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
            +V  A+++    V EI L G N   + G      K  F DL+  L  ++G+ R R ++ 
Sbjct: 174 NIVKSAKQIASEDVKEIVLTGVNTGDF-GIQEGKRKERFVDLVKELDNVEGIDRFRISSI 232

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
            P  +++ +I+        +P+ H+P+QSGS+ IL+ M RR+    Y   + +I+ + P 
Sbjct: 233 EPNLLTNEIIEFVSQSKRFVPHFHVPLQSGSNIILRKMRRRYLRELYEDRVAKIKQLMPQ 292

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
             I  D IVGFPGETD++F  T   + ++  +    F YS R  T    M E V   V+ 
Sbjct: 293 CCIGVDVIVGFPGETDENFLETYHFLKELPVSYLHVFTYSERPNTDADEMDEVVPMKVRN 352

Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
           ER   L+    +++ +F +  + +   VL EK
Sbjct: 353 ERSKMLRSLSEKKKRAFYEENLDREEVVLFEK 384


>gi|332703256|ref|ZP_08423344.1| RNA modification enzyme, MiaB family [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332553405|gb|EGJ50449.1| RNA modification enzyme, MiaB family [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 445

 Score =  166 bits (421), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 121/407 (29%), Positives = 203/407 (49%), Gaps = 28/407 (6%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           F +++ GC++N Y+S  + + + ++G+  V+ M  A +++ N+C +    A+ V +  G+
Sbjct: 11  FAIRTLGCKINQYESQALREAWLARGWSEVD-MRRARVVLFNSCAV---TADAVRTLRGQ 66

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           +R +   R+ +  +  +V+ GC AQ    E+     +  VV+  Q   R   L      G
Sbjct: 67  VRQVH--RVNQEAE--IVITGCAAQVLSAELADLVDMARVVLVDQP--RKAGLASYPDIG 120

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
             +  +       F  L I D  + R R V   L IQ+GC   CT+C+VP  RG   SR 
Sbjct: 121 PALPKS------AFPPLCISD--FKRARPV---LKIQDGCSHGCTYCIVPQGRGPSRSRP 169

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK----GLVR 262
           ++ ++ EAR+L+ +G  EI L G N+  + G+ L      +  L +  SE+     G  R
Sbjct: 170 MADILAEARRLLASGFREIILGGINLRHF-GRDLPDAPDLWDLLAFLDSELAPKWAGRAR 228

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE-YRQIIDR 321
           LR ++  P  +    +       ++ P+LHL +QS S  IL+SM R H A E     +  
Sbjct: 229 LRLSSLDPAQLGGKALDTLAASRLVCPHLHLSLQSLSPEILRSMGRGHYAPEEIEGFLRE 288

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +  V P  A+ +D +VGFPGETD  F  T+  +D++    A  F YS R GT  +NM  Q
Sbjct: 289 LEKVWPTFALGADLLVGFPGETDGHFEQTVTALDRLPLTYAHVFPYSKRPGTRAANMANQ 348

Query: 382 VDENVKAERLLCLQKKLREQQVSF-NDACVGQIIEVLIEKHGKEKGK 427
           V    K ER+  L+    +++ +F       + + V++EK G++ G+
Sbjct: 349 VSTREKKERVGQLRALADKRKAAFMRHLLTREKLAVIMEKSGEKPGR 395


>gi|323436185|ref|ZP_01051257.2| MiaB-like tRNA modifying enzyme YliG [Dokdonia donghaensis MED134]
 gi|321496500|gb|EAQ38091.2| MiaB-like tRNA modifying enzyme YliG [Dokdonia donghaensis MED134]
          Length = 450

 Score =  166 bits (421), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 135/459 (29%), Positives = 226/459 (49%), Gaps = 55/459 (11%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD-----DADLIVLNTCHIREKAAEKVYSF 83
           V + GC  NVYDS  +       G  + N MD     D +++V+NTC   + A E+  + 
Sbjct: 13  VVTLGCSKNVYDSEVL------MGQLKANEMDVAHEEDGNIVVINTCGFIDNAKEESVNT 66

Query: 84  LGRIRNLKNSRIKEGGDL-LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
           +     L+  + KE GD+  V V GC+++    ++ +  P V+   G      LP LL  
Sbjct: 67  I-----LEYVKQKEEGDVDKVFVTGCLSERYKPDLQKEIPDVDQYFGTT---ELPGLL-- 116

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
                + +  DY  E   ER++     Y       A+L I EGCD+ C+FC +P  RG  
Sbjct: 117 -----KALGADYKHELIGERITTTPKNY-------AYLKIAEGCDRPCSFCAIPLMRGKH 164

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGL- 260
            S+S+  +V EA+KL  NGV E+ L+ Q++  +   GLD  +K   ++LL +L +++G+ 
Sbjct: 165 KSKSIEHLVVEAKKLAANGVTELILIAQDLTYY---GLDLYKKRNLAELLENLVKVEGIE 221

Query: 261 -VRLRYT--TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
            +RL Y   +  P D+ D + +       +  YL +P+Q  +D ILKSM R  T  +   
Sbjct: 222 WIRLHYAFPSGFPVDVLDVMKREPK----VCNYLDIPLQHIADPILKSMRRGTTMAKTNA 277

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
           +++R R   P++ I +  IVG+PGET++DF+     V    + +   F YS    T   N
Sbjct: 278 LLERFRESVPEMTIRTTLIVGYPGETEEDFQTLKQWVKDQRFERLGCFTYSHEENTHAYN 337

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SP 433
           + + V E+VK +R   + +   +     N   +G+  ++++++  KE    +GR    SP
Sbjct: 338 LEDDVPEDVKMDRANQIMEIQSQISWELNQQKIGKEFKIVVDR--KEGNFFIGRTEFDSP 395

Query: 434 WLQSVVLNSKNH---NIGDIIKVRITDVKISTLYGELVV 469
            + + VL          GD   V++T+ +   LY E +V
Sbjct: 396 DVDNEVLVDATKFYLKTGDYAMVKVTEAEDFDLYAEPLV 434


>gi|258543518|ref|YP_003188951.1| tRNA 2-methylthioadenosine synthase MiaB [Acetobacter pasteurianus
           IFO 3283-01]
 gi|256634596|dbj|BAI00572.1| tRNA 2-methylthioadenosine synthase MiaB [Acetobacter pasteurianus
           IFO 3283-01]
 gi|256637652|dbj|BAI03621.1| tRNA 2-methylthioadenosine synthase MiaB [Acetobacter pasteurianus
           IFO 3283-03]
 gi|256640706|dbj|BAI06668.1| tRNA 2-methylthioadenosine synthase MiaB [Acetobacter pasteurianus
           IFO 3283-07]
 gi|256643761|dbj|BAI09716.1| tRNA 2-methylthioadenosine synthase MiaB [Acetobacter pasteurianus
           IFO 3283-22]
 gi|256646816|dbj|BAI12764.1| tRNA 2-methylthioadenosine synthase MiaB [Acetobacter pasteurianus
           IFO 3283-26]
 gi|256649869|dbj|BAI15810.1| tRNA 2-methylthioadenosine synthase MiaB [Acetobacter pasteurianus
           IFO 3283-32]
 gi|256652859|dbj|BAI18793.1| tRNA 2-methylthioadenosine synthase MiaB [Acetobacter pasteurianus
           IFO 3283-01-42C]
 gi|256655913|dbj|BAI21840.1| tRNA 2-methylthioadenosine synthase MiaB [Acetobacter pasteurianus
           IFO 3283-12]
          Length = 414

 Score =  166 bits (421), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 121/451 (26%), Positives = 204/451 (45%), Gaps = 57/451 (12%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           ++GC++N ++S  M +           S+D+  +I++NTC +  +A  +    + R    
Sbjct: 8   TFGCRLNTWESEVMRN--------HAASLDN--VIIVNTCAVTGEAERQARQAIRRAH-- 55

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLP---------ELLE 141
                +E  D  +VV GC AQ                + P+++  LP         E L+
Sbjct: 56  -----RENPDARIVVTGCAAQ----------------INPESWSDLPGVARVLGNEEKLK 94

Query: 142 RARFGKRVVDTDYSVED----KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197
              +    +    +V D    K     +V     R R   AF+ +Q+GC+  CTFC++P+
Sbjct: 95  AESWSASALSEPLAVSDIMAAKETAAHLVTEFAGRTR---AFVQVQQGCNHRCTFCIIPF 151

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257
            RG   S  +  VV++ R L+ +G  E+ L G ++ +W G+ L G+          L  +
Sbjct: 152 GRGPSRSVPVGAVVEQVRALVQSGYREVVLTGVDMTSW-GEDLPGKPVLGQLCRRVLRLV 210

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
             L R+R ++  P ++ + + +   +    MPYLHL +Q+GSD ILK M RRH   +  +
Sbjct: 211 PELERMRLSSVDPVEIDEDIWQLLAEEPRFMPYLHLSLQAGSDLILKRMKRRHLVADAAR 270

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
           +++R R +RPDI I +D I GFP E +  F  T   + +        F YS R GTP + 
Sbjct: 271 VVERARKLRPDIGIGADVIAGFPTEDESLFEETRSFLAQQALPYLHVFPYSERPGTPAAR 330

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQS 437
           M   V    +  R   L++        + ++ VGQ + VL+E          G S     
Sbjct: 331 M-RAVPVPERKARAAQLREVGAASAARYYESLVGQPLRVLMET------PTTGHSEQFAP 383

Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           V L      +G+II ++ T  + + L  E +
Sbjct: 384 VRLAQGEAEVGEIITLQPTMAESAGLVVERI 414


>gi|255320445|ref|ZP_05361626.1| conserved hypothetical protein [Acinetobacter radioresistens SK82]
 gi|262378341|ref|ZP_06071498.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Acinetobacter
           radioresistens SH164]
 gi|255302417|gb|EET81653.1| conserved hypothetical protein [Acinetobacter radioresistens SK82]
 gi|262299626|gb|EEY87538.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Acinetobacter
           radioresistens SH164]
          Length = 447

 Score =  166 bits (421), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 133/464 (28%), Positives = 217/464 (46%), Gaps = 44/464 (9%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  FV S GC   + DS R+     ++GY+  +  D ADL+V+NTC   E A ++    
Sbjct: 4   PKVGFV-SLGCPKALVDSERILTQLKTEGYQVASDYDGADLVVVNTCGFIESAVQESLDA 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G   + +N R        V+V GC+ + E ++I +  P V  V G   Y  +   + + 
Sbjct: 63  IGEAMS-ENGR--------VIVTGCLGKDE-DKIRQMHPNVLKVTGAAAYEDVMSAVHQY 112

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
                         + F  L + + G        A+L I EGC+  CTFC++P  RG  +
Sbjct: 113 VPAP-------PKHNPFIDL-VPEQGVRLTPKHYAYLKISEGCNHRCTFCIIPSMRGDLV 164

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLY 252
           SR +  V++EA  L   GV EI ++ Q+ +A           W G+ +   K  F D+  
Sbjct: 165 SRPVGSVLEEAAALKRAGVREILVISQDTSAYGVDTKYKLDFWNGQPV---KTKFFDMCE 221

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
           +L ++   VRL Y   +P   +   + A G    ++PYL +P Q  S RILK M R   +
Sbjct: 222 ALGQLGIWVRLHYVYPYPHVDAVIDLMAQGK---ILPYLDIPFQHASPRILKLMKRPAHS 278

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
               + +   R   PD+ I S F+VGFPGET++DF+  ++ + +    +   F YSP  G
Sbjct: 279 ENTLERLKVWREKCPDLVIRSTFVVGFPGETEEDFQILLEWLKEAQLDRVGCFTYSPVEG 338

Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS 432
              +++ + V E VK ER     +  +E   +     +GQ + VL++   +E    V RS
Sbjct: 339 ATANDLPDHVPEEVKQERYERFMQVQQEISAAKLQKRIGQTMTVLVDNLEEEFPVAVARS 398

Query: 433 ----PWLQSVV----LNSKNHNIGDIIKVRITDVKISTLYGELV 468
               P +   V    ++      GD+++V ITD     L+ +L+
Sbjct: 399 YADAPEIDGNVFVEDIDKSQIKSGDLLEVEITDADEYDLFAKLI 442


>gi|327402650|ref|YP_004343488.1| 30S ribosomal protein S12P methylthiotransferase [Fluviicola
           taffensis DSM 16823]
 gi|327318158|gb|AEA42650.1| SSU ribosomal protein S12P methylthiotransferase [Fluviicola
           taffensis DSM 16823]
          Length = 437

 Score =  166 bits (421), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 133/458 (29%), Positives = 221/458 (48%), Gaps = 50/458 (10%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYE--RVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           V + GC  N +DS  +     +  +E       DD++++++NTC   + A ++    + R
Sbjct: 13  VVTLGCAKNTFDSEVLMAQLKANKFEVEHEAKQDDSEIVIINTCGFIDNAKQESIDTILR 72

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
             + KN    EG    V V GC+ Q   +++ +  P V+   G +    LP LL      
Sbjct: 73  YADAKN----EGLVDKVYVTGCLVQRYKDDLEQEIPEVDAFFGTRD---LPRLL------ 119

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
            + +  DY  E   ERL      Y       A+  I EGCD+ C+FC +P  RG  +S  
Sbjct: 120 -KTLKADYKHELVGERLLTTPSHY-------AYFKIAEGCDRPCSFCAIPLMRGKHVSTP 171

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGL--VRL 263
           + Q+V  A+ L   GV EI L+ Q++  +   GLD  +K   ++LL  L+ ++G+  +RL
Sbjct: 172 MDQLVASAKSLAAQGVKEILLIAQDLTYY---GLDIYKKRNLAELLDQLAAVEGIEWIRL 228

Query: 264 RYT--TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
            Y      P D+ D ++K       +  YL +P+Q GS +IL+SM R  T  +   ++  
Sbjct: 229 HYAFPAGFPMDVLDAMVKYPN----VCLYLDMPLQHGSTKILQSMRRGITREKTEALVHT 284

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           IR   P IAI +  I G+PGET++DF+  +D V+++ + +   F YS    T   ++ + 
Sbjct: 285 IREKVPGIAIRTTLIAGYPGETEEDFQEMVDFVERMRFDRLGIFTYSHEEDTHAHSLEDD 344

Query: 382 VDENVK---AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPW 434
           V + VK   A+ ++ LQ  +       N   +G+  +VL ++   E    +GR    SP 
Sbjct: 345 VPDEVKRQRADEIMELQSGI---SYELNQTKIGKTFKVLFDR--IEGDYFIGRTEFDSPE 399

Query: 435 LQSVVLNSKNH---NIGDIIKVRITDVKISTLYGELVV 469
           + + VL  K+    ++GD   V IT      LYG+  +
Sbjct: 400 VDNEVLVKKSEGYVSVGDFALVEITSADHYDLYGKFAM 437


>gi|330444283|ref|YP_004377269.1| MiaB-like tRNA modifying protein [Chlamydophila pecorum E58]
 gi|328807393|gb|AEB41566.1| MiaB-like tRNA modifying enzyme [Chlamydophila pecorum E58]
          Length = 425

 Score =  166 bits (420), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 125/446 (28%), Positives = 212/446 (47%), Gaps = 38/446 (8%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD-DADLIVLNTCHIREKAAEKVYSFLG 85
           F +   GC++N Y+     D     G E +   +  AD+ ++NTC +   A        G
Sbjct: 14  FKLVCLGCRVNQYEVQGYRDQLTLLGCEEITDPETPADICIVNTCAVTSSAESS-----G 68

Query: 86  R--IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           R  IR +     ++  +  +VV GC+ +A+            +V   + +  + +L  + 
Sbjct: 69  RHAIRQM----CRQNPEARLVVTGCLGEADKSFFASLGRECLLVPNKEKHLLIEKLFPQ- 123

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
                       +ED  E       G +R     AF+ +Q+GC+ FC++C++PY RG  +
Sbjct: 124 ------------MEDFPEFCIRSFEGKSR-----AFIKVQDGCNSFCSYCIIPYLRGRSV 166

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR   ++++E R LI+ G  E+ + G NV  +  +G      + + LL  +  + GL RL
Sbjct: 167 SRPSQEILEEIRTLIEGGYREVVISGINVGDYSHEGD-----SLASLLRKIDMLPGLERL 221

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R ++  P D+ + L +A        P  HL +QSGS+ ILK MNR++T   +   ++R+R
Sbjct: 222 RVSSIDPDDVQEDLCQALVSCKHTCPSSHLVLQSGSNAILKRMNRKYTRNMFLDCVERLR 281

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           S  P    ++D IVGFPGE+D DF  T+ +V+ +G+ +   F YSPR  T   +   QV 
Sbjct: 282 SFDPHYTFTTDVIVGFPGESDQDFEDTVKIVEDVGFIKVHIFPYSPRPRTRAYSYEGQVP 341

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
             + AER   L +  +       +  +G    VL+E+     G+  G +P+   V    K
Sbjct: 342 AQILAERKKYLAEVAKTVAKKEMEKRLGTRTTVLVEQVS--CGEACGHTPYFDMVRFPIK 399

Query: 444 NH-NIGDIIKVRITDVKISTLYGELV 468
              +I  ++ V + +VK  +  GE V
Sbjct: 400 GEVSINTMVPVVLREVKEESFSGEQV 425


>gi|170702240|ref|ZP_02893142.1| MiaB-like tRNA modifying enzyme YliG [Burkholderia ambifaria
           IOP40-10]
 gi|172060745|ref|YP_001808397.1| ribosomal protein S12 methylthiotransferase [Burkholderia ambifaria
           MC40-6]
 gi|238065301|sp|B1YR17|RIMO_BURA4 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|170132845|gb|EDT01271.1| MiaB-like tRNA modifying enzyme YliG [Burkholderia ambifaria
           IOP40-10]
 gi|171993262|gb|ACB64181.1| MiaB-like tRNA modifying enzyme YliG [Burkholderia ambifaria
           MC40-6]
          Length = 453

 Score =  166 bits (420), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 132/477 (27%), Positives = 217/477 (45%), Gaps = 61/477 (12%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  FV S GC   + DS ++     ++GYE   + D ADL+V+NTC   ++A ++    
Sbjct: 5   PKVGFV-SLGCPKALVDSEQIITQLRAEGYEISGTYDGADLVVVNTCGFIDEAVQESLDA 63

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCV---AQAEGEEILRR-SPIVNVVVGPQTYYRLPEL 139
           +G         + E G   V+V GC+   + A G  ++    P V  V GP     + + 
Sbjct: 64  IGEA-------LTENGK--VIVTGCLGAKSSASGSNLIEEVHPKVLAVTGPHAVGEVMQA 114

Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           +  +   K          D F  L +   G        A+L I EGC+  CTFC++P  R
Sbjct: 115 V-HSHLPKP--------HDPFVDL-VPAAGIKLTPRHYAYLKISEGCNHRCTFCIIPSMR 164

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFS 248
           G  +SR +++V+ EA  L  +GV E+ ++ Q+ +A           W GK +   K   +
Sbjct: 165 GDLVSRPVAEVMLEAENLFKSGVKELLVISQDTSAYGVDVKYRTGFWNGKPI---KTRMT 221

Query: 249 DLLYSLSEIKG----LVRLRYTTSHPRD------MSDCLIKAHGDLDVLMPYLHLPVQSG 298
           DL+ +L E+       VRL Y   +P        M++   K H     ++PYL +P Q  
Sbjct: 222 DLVAALGELAAQYGAWVRLHYVYPYPSVDEVIPLMAEGPFKGH-----VLPYLDVPFQHA 276

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
              +LK M R   A +  + + + R + PD+ I S FI GFPGET++ F   +D + +  
Sbjct: 277 HPEVLKRMKRPANAEKVLERVQKWREICPDLTIRSTFIAGFPGETEEQFETLLDFIREAE 336

Query: 359 YAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI 418
             +   F YSP  G   + +   + ++V+  R     +   E         VG+ ++VLI
Sbjct: 337 LDRVGCFAYSPVEGATANELDGALPDDVREARRARFMEVAEEVSAQRIQRKVGKTLKVLI 396

Query: 419 EKHGKEK--GKLVGRSPWLQSVVL------NSKNHNIGDIIKVRITDVKISTLYGEL 467
           ++   E   G+    +P +  VV        SK + +GD + V+IT      L+GE+
Sbjct: 397 DEVSAEGGIGRTAADAPEIDGVVYVEPATKASKRYKVGDFVSVKITGADGHDLWGEV 453


>gi|26349829|dbj|BAC38554.1| unnamed protein product [Mus musculus]
 gi|148700457|gb|EDL32404.1| CDK5 regulatory subunit associated protein 1-like 1, isoform CRA_d
           [Mus musculus]
          Length = 520

 Score =  166 bits (420), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 126/457 (27%), Positives = 218/457 (47%), Gaps = 41/457 (8%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           Q+ +++++GC  N  D   M     + GY+   +  DADL +LN+C ++  A +    F 
Sbjct: 63  QKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAED---HFR 119

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             I+  +    K      VV+AGCV QA+  +   +      ++G Q   R+ E++E   
Sbjct: 120 NSIKKAQEENKK------VVLAGCVPQAQPRQDYLKG---LSIIGVQQIDRVVEVVEETI 170

Query: 145 FGKRVVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            G  V       +D  +RL  + +D    RK  +   ++I  GC   CT+C   + RG  
Sbjct: 171 KGHSVRLLGQK-KDNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNL 229

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-RGKGLDGEKCTFSDLLYSLSEI---- 257
            S  + ++V+ A++    GVCEI L  ++  A+ R  G D        LL+ L E+    
Sbjct: 230 ASYPIDELVERAKQSFQEGVCEIWLTSEDTGAYGRDIGTD-----LPTLLWKLVEVIPEG 284

Query: 258 ----KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
                G+    Y   H  +M+  L         +  +LH+PVQS SD +L  M R +   
Sbjct: 285 AMLRLGMTNPPYILEHLEEMAKILNHPR-----VYAFLHIPVQSASDSVLMDMKREYCVA 339

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
           ++++++D ++   P I I++D I GFPGETD DF+ T+ LV++  +   F  ++ PR GT
Sbjct: 340 DFKRVVDFLKEKVPGITIATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGT 399

Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFN--DACVGQIIEVLIEKHGKEKGKLVGR 431
           P +   EQV  +VK +R   L +       S+N  D  +G+  +VL+ +   +    V  
Sbjct: 400 PAAKA-EQVPAHVKKQRTKDLSRVFH----SYNPYDHKIGERQQVLVTEESFDSKFYVAH 454

Query: 432 SPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           + + + V++      +G +++V I +     L G+ V
Sbjct: 455 NRFYEQVLVPKNPAFMGKMVEVDIYESGKHFLKGQPV 491


>gi|288940181|ref|YP_003442421.1| MiaB-like tRNA modifying enzyme [Allochromatium vinosum DSM 180]
 gi|288895553|gb|ADC61389.1| MiaB-like tRNA modifying enzyme [Allochromatium vinosum DSM 180]
          Length = 469

 Score =  166 bits (420), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 132/450 (29%), Positives = 212/450 (47%), Gaps = 30/450 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERV-NSMDDADLIVLNTCHIREKAAEKVYSFL 84
           R  +++ GC++N  +       F ++G+  V +    A+LIV+NTC +  +A  K    L
Sbjct: 2   RVRLQTLGCRLNEAELESWARDFQARGFTIVEDETAPAELIVVNTCAVTGEAVRKSRQIL 61

Query: 85  GRI-RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYY--------- 134
            R  R    +R+   G  LV + G    A   +    S ++     P +           
Sbjct: 62  RRAQRRHPGARLIVSG-CLVSLDGGATSAGTAQAFPLSSLLPTSTPPASSTVASDGLIVV 120

Query: 135 -----RLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKF 189
                RL EL+  A  G   +D+          + +    + R R   AF+ IQ+GC   
Sbjct: 121 NRDKDRLVELV-LAALG---LDSGLPHPSATNAMDLAAPLFARGR-QRAFVKIQDGCRYQ 175

Query: 190 CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSD 249
           CTFCV    RG E SR L ++V E  +  D+G+ E+ L G ++  + G  L  +    + 
Sbjct: 176 CTFCVTTQARGPERSRPLPEIVREVERFQDSGIREVVLTGVHLGGY-GADLGTD---LTH 231

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
           L+  L     + RLR  +  P D+ +       D   LMP+LHLP+QSGSDR+L+ M RR
Sbjct: 232 LIERLLNETAIPRLRLGSLEPWDLPERFWSLFADRR-LMPHLHLPLQSGSDRVLRRMARR 290

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369
               EY ++++  R+  PD+ +++D IVGFPGE DDD+R T +L + + +     F YSP
Sbjct: 291 CKRDEYIRLVEGARAAIPDLNLTTDIIVGFPGEDDDDWRQTFELAESLRFGHIHVFGYSP 350

Query: 370 RLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK--HGKEKGK 427
           R GTP +     VD   +  R+  L+      ++      +G+ + +L E+     E   
Sbjct: 351 RPGTPAAGFANPVDARTRRRRVGELESLAHRSRLQILRDQIGKTVMLLHERLPDAFEGRP 410

Query: 428 LVGRSP-WLQSVVLNSKNHNIGDIIKVRIT 456
             G +P +L   V ++     G +I+VRIT
Sbjct: 411 RSGYTPNYLPVHVHSAAPIGEGSLIQVRIT 440


>gi|73667402|ref|YP_303418.1| tRNA 2-methylthioadenosine synthase [Ehrlichia canis str. Jake]
 gi|72394543|gb|AAZ68820.1| tRNA 2-methylthioadenosine synthase [Ehrlichia canis str. Jake]
          Length = 411

 Score =  166 bits (420), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 130/443 (29%), Positives = 224/443 (50%), Gaps = 38/443 (8%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V ++GC++N Y+S  +++       E        D+IV+++C +  +A  +V S   +IR
Sbjct: 4   VITFGCRLNFYESEVIKNNLRKAQLE--------DVIVIHSCAVTNEAERQVRS---KIR 52

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
            L N+      ++ ++VAGC AQ    E+    P V  V+G Q   +    +     GK 
Sbjct: 53  KLYNN----NANVKIIVAGCAAQL-NPELYINMPGVIKVLGNQDKLKYESYVTE---GKV 104

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVT-AFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
           +V     +ED  E   IV    NR  G + A + IQ GC+  CTFCV+   RG   S ++
Sbjct: 105 IVS---KIEDSRE---IVQNSVNRFSGKSRALIEIQNGCNHECTFCVITKARGDNRSLNI 158

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD--GEKCTFSDLLYSLSEIKGLVRLRY 265
             ++ + R  ++NG  E+   G +++ +   GLD  G++   + +   LS +  L RLR 
Sbjct: 159 EDIITKVRDCVNNGYNEVVFTGVDISDF---GLDIYGQRVLGTMVKRVLSAVPQLRRLRL 215

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
           ++    ++ D L+    +    MP+LHL +QSG++ ILK M RRH   +     ++IR+ 
Sbjct: 216 SSIDVAEIEDDLVDIIVNEPRFMPHLHLSLQSGNNLILKRMKRRHNREQVIDFCNKIRNK 275

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
           R ++A  +D IVGFP ET++ F  T+ L+++   +    F YS R GTP + M  QV + 
Sbjct: 276 RKEVAFGADIIVGFPTETEEMFNDTVRLIEEANISYLHVFPYSRREGTPAARM-PQVIQE 334

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445
           VK  R+  L +   ++  SF +  +     V++EK G       GR+     V   + + 
Sbjct: 335 VKKRRVKYLLEFAEKRLHSFYNTLLHTKQSVIVEKSG------TGRAENFALVKFANNDV 388

Query: 446 NIGDIIKVRITDVKISTLYGELV 468
            +  I++V+IT V+ + L  +++
Sbjct: 389 KLQSIVEVKITTVEGNCLIAQVL 411


>gi|222150096|ref|YP_002551053.1| hypothetical protein Avi_4197 [Agrobacterium vitis S4]
 gi|221737078|gb|ACM38041.1| conserved hypothetical protein [Agrobacterium vitis S4]
          Length = 424

 Score =  166 bits (420), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 116/398 (29%), Positives = 188/398 (47%), Gaps = 30/398 (7%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V ++GC++N Y+S  M+      G ++         I++NTC +  +A  +         
Sbjct: 6   VITFGCRLNTYESEVMKAEAEKAGLDQA--------ILVNTCAVTGEAVRQARQ------ 51

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG------PQTYYRLPELLER 142
                  +E     ++V GC AQ +        P V++V+G       + Y  LP+    
Sbjct: 52  -AIRRARRENPQARIIVTGCAAQTDAAG-FAAMPEVDLVLGNEEKLKAEHYRALPDFGVA 109

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           A    RV D     E   + +S +DG       V  FL +Q GCD  CTFC++PY RG  
Sbjct: 110 AAEKLRVNDIMSVTETAPQMVSHIDGH------VRGFLQVQNGCDHRCTFCIIPYGRGNS 163

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            S  +  VV++ARKL++NG  E+ L G +  ++ G  L G+          L ++  ++R
Sbjct: 164 RSVPMGAVVEQARKLVENGYREVVLTGVDATSY-GADLPGQPSLGLLAKTLLKQVPDILR 222

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LR ++    ++   L+    +    MP+LHL +Q G D ILK M RRH+  +      ++
Sbjct: 223 LRLSSIDSIEVDRHLLDLIAEEPRFMPHLHLSLQHGDDMILKRMKRRHSRADALGFATQV 282

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R +RPD +  +D I GFP ET++    +  L  +IG A    F YSPR GTP + M  Q+
Sbjct: 283 RVLRPDFSFGADMIAGFPTETEEMAANSARLAQEIGIAHLHVFPYSPRPGTPAARM-PQL 341

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
           D  +   R   L+    +   +  +  VG   ++L+E+
Sbjct: 342 DRALVKARAASLRAVAEQLHHAHLEHMVGSQQKLLVER 379


>gi|322800811|gb|EFZ21687.1| hypothetical protein SINV_11782 [Solenopsis invicta]
          Length = 538

 Score =  166 bits (420), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 124/460 (26%), Positives = 211/460 (45%), Gaps = 47/460 (10%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           Q  +VK++GC  N  D+  M     + GY        ADL +LN+C ++  A ++  + +
Sbjct: 59  QTIYVKTWGCTHNSSDTEYMAGQLATYGYNLTEDKLKADLWLLNSCTVKNPAEDQFRNEI 118

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA- 143
              +N+            VVVAGCV Q   +    +      V+G Q   R+ E++E   
Sbjct: 119 EHGKNIGKH---------VVVAGCVPQGAPKSSFLQG---LSVIGVQQIDRVVEVVEETL 166

Query: 144 -----RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
                RF K+  D+   +      L  V     R+  +   + I  GC   CT+C   + 
Sbjct: 167 KGNTVRFLKQKKDSGKKIGGASLSLPKV-----RRNPLIEIIAINTGCLNQCTYCKTKHA 221

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI- 257
           RG   S    ++V+ A++  + GVCE+ L  ++  A+ G+ +        +LL+ L ++ 
Sbjct: 222 RGELGSYPPEEIVERAKQAFEEGVCELWLTSEDTGAY-GRDIG---TNLPELLWQLVDVI 277

Query: 258 -------KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
                   G+    Y   H  +M+  L         +  +LH+PVQSGSD++L  M R +
Sbjct: 278 PDGCMMRVGMTNPPYILEHLDEMAKILQHPR-----VYSFLHIPVQSGSDQVLADMKREY 332

Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370
           T  E+  +++ +    P + I++D I GFP ET+ DF  TM L  K  +   F  +Y PR
Sbjct: 333 TRAEFEHVVNFLSERVPGLTIATDIICGFPTETEMDFEETMTLCQKYKFPSLFINQYFPR 392

Query: 371 LGTPGSNMLEQVDENVKAERLLCLQKKLRE--QQVSFNDACVGQIIEVLIEKHGKEKGKL 428
            GTP + ML+     V A+++    K+L E  Q        VG   +VL+ +   +K   
Sbjct: 393 PGTPAARMLK-----VPAQKVKARTKRLSEFFQSYELYGHKVGLQQKVLVTEVSHDKQHY 447

Query: 429 VGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           VG + + + V++  K   +G +I V+I +    ++ GE +
Sbjct: 448 VGHNKFYEQVLIPMKQEYMGKMIDVKIKEATKFSMKGEPI 487


>gi|327537949|gb|EGF24646.1| RNA modification enzyme, MiaB family [Rhodopirellula baltica WH47]
          Length = 428

 Score =  166 bits (420), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 117/403 (29%), Positives = 203/403 (50%), Gaps = 38/403 (9%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +   ++ GC++N Y++  +     + GYE  +  + ADL ++NTC + E    K    + 
Sbjct: 4   KLRTRTLGCKVNQYETELVRQGLQTIGYEDASDGESADLCIVNTCTVTETGDAKSRQVVR 63

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R+        +E  D  +VV GC A    EE+     +V V+   +    L +L+   RF
Sbjct: 64  RLN-------RENPDARIVVMGCYATRAPEEVSALPGVVEVLTDKR---ELGDLM--GRF 111

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G   V T  S            G   RKR   A++ +Q+GC   C++C++P  R    SR
Sbjct: 112 GVIDVPTGLS------------GFAGRKR---AYVKVQDGCLLRCSYCIIPMVRPKLHSR 156

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNA----WRGKGLDGEKCTFSDLLYSLSEIKGLV 261
              ++VDE  +L+D G  E+ L G ++      W       E    + L+  L +I G  
Sbjct: 157 PSQEIVDEVTRLVDAGHREVILTGIHLGHYGVDWNRNKPREEWVRLAHLVKDLCQIPGQF 216

Query: 262 RLRYTTSHPRDMSDCLIKAHGDL-DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
           R+R ++    +++  LI    +  D ++P+LHL +QSGSD +L+ M RR   +  +  +D
Sbjct: 217 RIRMSSIEATEVTRELIGVMAEFPDKVVPHLHLCLQSGSDSVLRRMRRR---WGTKMFLD 273

Query: 321 RIRSVRPDI---AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
           R R +R  +   AI++D I GFPGET+++F  T+    + G+++  +F YS R GTP + 
Sbjct: 274 RCRLLRESLDRPAITTDIIAGFPGETEEEFEQTLRTCREAGFSKIHAFPYSARRGTPAAE 333

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
             +Q+D+ + +ER+  L +   E +  + +  VG  +E+L+E+
Sbjct: 334 RDDQLDKGLISERVDRLGEVEAELRQQYYETLVGSDLELLVEE 376


>gi|78357764|ref|YP_389213.1| hypothetical protein Dde_2722 [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78220169|gb|ABB39518.1| Protein of unknown function UPF0004 [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
          Length = 435

 Score =  166 bits (420), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 109/367 (29%), Positives = 183/367 (49%), Gaps = 29/367 (7%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P RF+  + GC++N Y++  + +++ ++G+  V S  +ADL+++NTC +  KA   V + 
Sbjct: 5   PTRFYAATLGCKINQYETQALREVWQARGFTEVQSTAEADLVLVNTCAVTAKAVSDVRAT 64

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           + R  +  N   +      +VV GC AQ  G+E+     +  VV  PQ        L++ 
Sbjct: 65  V-RQAHRANPLAR------IVVTGCAAQVLGDELAALPGVAAVV--PQDAK---AGLKQW 112

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             G     +       F  + +   GY R R V   + +Q+GC   CT+C+VP+TRG   
Sbjct: 113 PQGAVSAPSGSGAAQAFPDMQV--SGYTRARAV---VKVQDGCSHRCTYCIVPFTRGPSR 167

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-----SEIK 258
           SR+   + DE R+L+  G  E+ L G N+  + G+ L      F D++  L      E  
Sbjct: 168 SRAPHDIADEVRRLLQGGFRELILSGVNLRQY-GRDL-AMPADFWDVVARLGNEFGPEWA 225

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           G  RLR ++  P  +    +       ++ P LHL +QSGS  +L+ M R H  Y  + +
Sbjct: 226 GRARLRISSLEPGQLGSKALDTLAANPLVSPQLHLSLQSGSASVLRRMGRGH--YTPQPL 283

Query: 319 IDRIRSVR---PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
           +D + S+R   P   + +D ++GFPGET ++F  T+    ++    A  F YS R GT  
Sbjct: 284 LDFLHSLRGIWPVYGLGADILMGFPGETREEFEETLAFCRELPLTYAHVFPYSRRPGTAA 343

Query: 376 SNMLEQV 382
           ++M +Q+
Sbjct: 344 ADMKDQL 350


>gi|21617853|ref|NP_653119.1| CDK5 regulatory subunit-associated protein 1-like 1 [Mus musculus]
 gi|81879575|sp|Q91WE6|CDKAL_MOUSE RecName: Full=CDK5 regulatory subunit-associated protein 1-like 1
 gi|16359212|gb|AAH16073.1| CDK5 regulatory subunit associated protein 1-like 1 [Mus musculus]
 gi|56205715|emb|CAI24677.1| CDK5 regulatory subunit associated protein 1-like 1 [Mus musculus]
 gi|56238093|emb|CAI25816.1| CDK5 regulatory subunit associated protein 1-like 1 [Mus musculus]
 gi|56800055|emb|CAI35240.1| CDK5 regulatory subunit associated protein 1-like 1 [Mus musculus]
 gi|56800204|emb|CAI35144.1| CDK5 regulatory subunit associated protein 1-like 1 [Mus musculus]
 gi|148700456|gb|EDL32403.1| CDK5 regulatory subunit associated protein 1-like 1, isoform CRA_c
           [Mus musculus]
          Length = 578

 Score =  166 bits (420), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 126/457 (27%), Positives = 219/457 (47%), Gaps = 41/457 (8%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           Q+ +++++GC  N  D   M     + GY+   +  DADL +LN+C ++  A +    F 
Sbjct: 63  QKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDH---FR 119

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             I+  +    K      VV+AGCV QA+  +   +      ++G Q   R+ E++E   
Sbjct: 120 NSIKKAQEENKK------VVLAGCVPQAQPRQDYLKG---LSIIGVQQIDRVVEVVEETI 170

Query: 145 FGKRVVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            G  V       +D  +RL  + +D    RK  +   ++I  GC   CT+C   + RG  
Sbjct: 171 KGHSVRLLGQK-KDNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNL 229

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-RGKGLDGEKCTFSDLLYSLSEI---- 257
            S  + ++V+ A++    GVCEI L  ++  A+ R  G D        LL+ L E+    
Sbjct: 230 ASYPIDELVERAKQSFQEGVCEIWLTSEDTGAYGRDIGTD-----LPTLLWKLVEVIPEG 284

Query: 258 ----KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
                G+    Y   H  +M+  L     +   +  +LH+PVQS SD +L  M R +   
Sbjct: 285 AMLRLGMTNPPYILEHLEEMAKIL-----NHPRVYAFLHIPVQSASDSVLMDMKREYCVA 339

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
           ++++++D ++   P I I++D I GFPGETD DF+ T+ LV++  +   F  ++ PR GT
Sbjct: 340 DFKRVVDFLKEKVPGITIATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGT 399

Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFN--DACVGQIIEVLIEKHGKEKGKLVGR 431
           P +   EQV  +VK +R   L +       S+N  D  +G+  +VL+ +   +    V  
Sbjct: 400 PAAKA-EQVPAHVKKQRTKDLSRVFH----SYNPYDHKIGERQQVLVTEESFDSKFYVAH 454

Query: 432 SPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           + + + V++      +G +++V I +     L G+ V
Sbjct: 455 NRFYEQVLVPKNPAFMGKMVEVDIYESGKHFLKGQPV 491


>gi|121601837|ref|YP_988357.1| MiaB family tRNA modification protein [Bartonella bacilliformis
           KC583]
 gi|120614014|gb|ABM44615.1| tRNA modification enzyme, MiaB family [Bartonella bacilliformis
           KC583]
          Length = 427

 Score =  166 bits (420), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 116/385 (30%), Positives = 191/385 (49%), Gaps = 31/385 (8%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           ++GC++N Y+S  +     S G +++   D A  I+ NTC +  +A  +    + + R  
Sbjct: 7   TFGCRLNSYESEVIRQKSSSAGLDQLK--DGA--IIFNTCAVTSEAVRQAKQAIRKAR-- 60

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG------PQTYYRLPELLERAR 144
                +E     ++V GC AQ E +     +  V++++G        +Y +LP+      
Sbjct: 61  -----RENPHTRIIVTGCAAQTETDNFSLMTE-VDLILGNEDKLHAHSYRQLPD------ 108

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT-AFLTIQEGCDKFCTFCVVPYTRGIEI 203
           FG    D    V D  E         N   G T AF+ IQ GCD  CTFC++PY RG   
Sbjct: 109 FGINH-DEKIRVNDIMEVRKNAPHMINSIEGRTRAFVQIQNGCDHRCTFCIIPYGRGPSR 167

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS-LSEIKGLVR 262
           S  +  ++++ ++LIDNG+ E+ L G ++ ++ G  L G K T   L+ + L  I  L R
Sbjct: 168 SVPMGTIIEQIKRLIDNGIQEVVLTGVDLTSY-GSNLPG-KATLGKLVSAILHHIPDLPR 225

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           L  ++    +    LI      + +MP+LHL +Q+G + ILK M RRH      Q    +
Sbjct: 226 LHLSSIDSIEADQELIDLLAYEERIMPHLHLSLQAGDNMILKRMKRRHLREHAIQFCQDL 285

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+ RP +   +D I GFP ET+  F+ +++L++  G      F +SPR GTP + M +  
Sbjct: 286 RAKRPSMVYGADLIAGFPTETEKMFQNSLNLINDCGLIHLHVFPFSPRKGTPAARMPQVN 345

Query: 383 DENVK--AERLLCLQKKLREQQVSF 405
            E +K  AE+L    +K  ++ +S+
Sbjct: 346 RETIKMRAEKLRKAGEKAYQKHLSY 370


>gi|209551318|ref|YP_002283235.1| MiaB-like tRNA modifying enzyme [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209537074|gb|ACI57009.1| MiaB-like tRNA modifying enzyme [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 424

 Score =  166 bits (420), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 119/400 (29%), Positives = 187/400 (46%), Gaps = 30/400 (7%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V ++GC++N Y+S  M+      G          + I++NTC +  +A  +         
Sbjct: 6   VITFGCRLNTYESEVMKAQAEKAGLN--------NAILINTCAVTGEAVRQARQ------ 51

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ------TYYRLPELLER 142
                  ++     ++V GC AQ E E     +  V+ V+G +      +Y  LP+    
Sbjct: 52  -AIRRARRDNPHARIIVTGCAAQTEKETFAEMAE-VDAVLGNEEKLASASYRSLPDFGVS 109

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
                RV D         + +  +DG       V AF+ +Q GCD  CTFC++PY RG  
Sbjct: 110 TEEKLRVNDIMSVKATAPQMVRHIDGH------VRAFIQVQNGCDHRCTFCIIPYGRGNS 163

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            S  +  VVD+ARKL D+G  EI L G +  ++ G  L G           L ++  + R
Sbjct: 164 RSVPMGAVVDQARKLADSGYREIVLTGVDATSY-GGDLPGAPTLGLLAKTLLKQLPDISR 222

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LR ++    +    L+    D    MP+LHL +Q G D ILK M RRH+  +  + I+ +
Sbjct: 223 LRLSSIDSIEADAHLMDLIADEPRFMPHLHLSLQHGDDMILKRMKRRHSRADALRFIEDV 282

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R +RP+++  +D I GFP ET++ F   + L ++ G A    F YSPR GTP + M  Q+
Sbjct: 283 RRLRPEMSFGADMIAGFPTETEEMFGNAVRLAEEAGIAHLHVFPYSPRPGTPAARM-PQL 341

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422
           D ++  +R   L+        S  D  VG    +L+E +G
Sbjct: 342 DRSLVKDRAARLRATGHRLHQSHLDGMVGTRQWLLVENNG 381


>gi|260424643|ref|ZP_05778954.1| RNA modification enzyme, MiaB family [Dialister invisus DSM 15470]
 gi|260402668|gb|EEW96215.1| RNA modification enzyme, MiaB family [Dialister invisus DSM 15470]
          Length = 433

 Score =  166 bits (420), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 115/423 (27%), Positives = 212/423 (50%), Gaps = 33/423 (7%)

Query: 52  GYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQ 111
           GYE    +  A +I++NTC   + A E+    + +    K    KEG    +V AGC+ Q
Sbjct: 10  GYELTEDLSTAQIIIINTCTFIDPAKEESIQTILQAARYK----KEGVCERLVAAGCLTQ 65

Query: 112 AEGEEILRRSPIVNVVVGPQTYYRLPELLERARF--GKRVVDTDYSV---EDKFERLSIV 166
              E + +  P +++ +G  ++  + E+++ +     K++   D +    E+   R  + 
Sbjct: 66  QYKEALGKEIPEIDIFIGTDSWQHILEVVQESYIHGNKKIYRFDTAPCEHEELIPRQPLT 125

Query: 167 DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEIT 226
                     +A++ I EGC   CTFC +PY RG   SRS+  VV E ++L   GV E  
Sbjct: 126 PP-------YSAYIKIAEGCSNGCTFCYIPYVRGAMRSRSIPSVVHEVKRLSSEGVREFN 178

Query: 227 LLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV 286
           L+ Q+ +++ G+ L+ +  T + LL  L +I  +  +R    +P    D L++     + 
Sbjct: 179 LIAQD-SSFYGRDLN-DGTTLARLLKELVKIDNVKWIRLFYLYPTYFDDELLEIITKEEK 236

Query: 287 LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDD 346
           +  Y+ +P+Q  SD +L+ M+RR ++   ++++ ++R+  P I I +  +VGFPGET+ D
Sbjct: 237 ICKYVDIPLQHISDSVLRRMHRRDSSQSIKKLLKKLRNTTPYITIRTTLMVGFPGETEAD 296

Query: 347 FRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER---LLCLQKKLREQQV 403
           F+  +  +  + +    +F YS + GTP + M++QV E +K  R   L+  Q ++ E+  
Sbjct: 297 FKELLTFIKAVKFDNMGAFTYSAQDGTPAARMVDQVTEEIKENRYHELMAAQAEISEEN- 355

Query: 404 SFNDACVGQIIEVLIEK-------HGKEKGKLVGRSPWLQSVVLNSKNHNI--GDIIKVR 454
             N   +G   EVL+E+       + + KG+   ++P +   V      ++  GD +K  
Sbjct: 356 --NRNLIGVDTEVLVEELLDDGCGNLQAKGRASFQAPEVDGNVYIDHPGDLRPGDFVKAH 413

Query: 455 ITD 457
           I D
Sbjct: 414 IID 416


>gi|327399314|ref|YP_004340183.1| 30S ribosomal protein S12 methylthiotransferase rimO [Hippea
           maritima DSM 10411]
 gi|327181943|gb|AEA34124.1| Ribosomal protein S12 methylthiotransferase rimO [Hippea maritima
           DSM 10411]
          Length = 429

 Score =  166 bits (420), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 119/438 (27%), Positives = 212/438 (48%), Gaps = 26/438 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + +++S GC  N  DS  M  +  ++G    +  + AD++++NTC   E A E+    + 
Sbjct: 2   KIYIESLGCPKNTADSEYMLGILKTKGCIIADRPEQADVLMVNTCGFIEPAKEESIDTIL 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +  LK    K      ++V GC+ +   +++    P V+  +G     R+ ++      
Sbjct: 62  ELAQLK----KNDPSKRLIVCGCLYERYRQQLKEELPEVDGFLGVNELDRISDV------ 111

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
              V+   ++++  +    I+   +        +L I +GC   CTFC +P  +G   SR
Sbjct: 112 ---VLGRSHNLKKPYIHRHIIGPKH------IGYLKIADGCSNRCTFCAIPLIKGGFKSR 162

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            + ++V+EA  L D GV E+ +  Q+  A+  +     K    +LL  L EI+GL  +R 
Sbjct: 163 GIDELVEEAEVLADKGVRELYITAQDTTAYMFE--KNRKNALVELLKKLDEIEGLSWVRL 220

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
             ++P  ++D LI+       ++ Y+ +P Q  SDR+L  M R +T  +  ++ D++R  
Sbjct: 221 MYTYPSYVTDELIEFMSTARRIVRYIDMPFQHASDRVLDDMGRGYTVKDMEKLTDKLRLK 280

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
              +AI S FIVGFP E + DF   +D ++      A  FKY    GT        +DE 
Sbjct: 281 VKGVAIRSTFIVGFPTEEEKDFDRLLDFLEYNQLDWAGFFKYYHEEGTQAFKNFYDMDEE 340

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVL- 440
            K +RL+  Q          N+  VG+++EV++++  +++G  +GRS      +  VVL 
Sbjct: 341 TKDDRLIEAQSLALSITEGINEKFVGEVLEVIVDEPAEDEGYWIGRSYRSAYEIDGVVLI 400

Query: 441 NSKNHNIGDIIKVRITDV 458
            + N   GD +KV+I +V
Sbjct: 401 KADNLKPGDFVKVKIEEV 418


>gi|297617227|ref|YP_003702386.1| MiaB-like tRNA modifying enzyme YliG [Syntrophothermus lipocalidus
           DSM 12680]
 gi|297145064|gb|ADI01821.1| MiaB-like tRNA modifying enzyme YliG [Syntrophothermus lipocalidus
           DSM 12680]
          Length = 442

 Score =  166 bits (420), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 120/448 (26%), Positives = 215/448 (47%), Gaps = 25/448 (5%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N  D+  M  +   +GY  VN MD AD++++NTC     A E+  + L     L
Sbjct: 9   SLGCPKNRVDTEVMLGLLKREGYLVVNKMDQADIVIVNTCGFVTPAKEEAINTL-----L 63

Query: 91  KNSRIKEGGDLLVVVA-GCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR- 148
           + + +K+ G++  ++A GC+ Q    E+    P ++ +VG   + R+ E++ R + G+R 
Sbjct: 64  EVALLKDKGNVKKIIATGCLVQRYARELQEEIPEIDALVGVSDFVRIAEVVARVQTGERC 123

Query: 149 --VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
             V +      +   R+     G+        +L I EGCD  C++C +P  RG   SR 
Sbjct: 124 CLVGELSNRFRESGPRVLSTPPGW-------VYLKIAEGCDNRCSYCAIPLIRGPFRSRP 176

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS-EIKGLVRLRY 265
           LS +++EA+KL   G+ E+ L+ Q+   +   G D EK     LL      I+G+  +R 
Sbjct: 177 LSDILEEAQKLAGLGIKELVLVAQDTTMY---GQDLEKNLSLALLLQNLSRIEGIEWIRV 233

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
             +HP  ++  +++  G    ++PYL LP+Q   D +LK M R ++      +I+ +R  
Sbjct: 234 MYAHPLHVTPEMVEVIGREPGVIPYLDLPIQHADDSVLKRMGRGYSRSYLVSLIEDLRRR 293

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P + + +  +VGFPGE++  F      V + G+    +F YS   GT  +   + V E 
Sbjct: 294 LPGLVLRTTVMVGFPGESESSFENLCSFVKETGFDWLGAFMYSEEEGTAAARWEDDVLEE 353

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE---KHGKEKGKLVGRSPWLQSVVL-- 440
            K  R   + +         N    G++ ++L+E     G   G+   ++P +  + +  
Sbjct: 354 EKQRRWREIMRMQSAITSELNRRRTGKVEQILVEGCTGPGVYWGRGYYQAPEVDGITILK 413

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
           ++K   +G ++  R+ D K   +  E+V
Sbjct: 414 SAKPLQVGQMVNARLVDSKGYDVTAEVV 441


>gi|291614491|ref|YP_003524648.1| MiaB-like tRNA modifying enzyme YliG [Sideroxydans lithotrophicus
           ES-1]
 gi|291584603|gb|ADE12261.1| MiaB-like tRNA modifying enzyme YliG [Sideroxydans lithotrophicus
           ES-1]
          Length = 441

 Score =  166 bits (420), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 136/470 (28%), Positives = 227/470 (48%), Gaps = 63/470 (13%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           PQ  FV S GC     DS  +     ++GY    S +DADL+V+NTC   + A  +    
Sbjct: 8   PQIGFV-SLGCPKATVDSEHILTRMRAEGYIITPSYEDADLVVVNTCGFIDSAVAESLEA 66

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ--------TYYR 135
           +G         ++E G   V+V GC+  A+G+ +++  P V  V GP          +  
Sbjct: 67  IGE-------ALQENGK--VIVTGCLG-AKGDIVMQTHPKVLAVTGPHETDAVMNAVHQH 116

Query: 136 LPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
           LP L                  D +  L +   G        A+L I EGC+  CTFC++
Sbjct: 117 LPRL-----------------HDPYVDL-VPPQGVRLTPQHFAYLKISEGCNHRCTFCII 158

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEK 244
           P  RG  +SR +  V+ EA KL+++GV E+ ++ Q+ +A           W GK L   K
Sbjct: 159 PSLRGDLVSRPVGDVMLEAEKLVESGVRELLVISQDTSAYGVDVKYRTGFWGGKPL---K 215

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304
              +DL  +L  +   VRL Y   +P       + A G +   +PYL +P Q  ++RILK
Sbjct: 216 TRMTDLAEALGSLGVWVRLHYVYPYPSVDDVIPLMAEGKI---LPYLDIPFQHANERILK 272

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
            M R  ++    + I + RS+ PDI + S FIVGFPGET+++F   +D +++    +  +
Sbjct: 273 LMKRPASSENVLKRIQQWRSICPDIVLRSTFIVGFPGETEEEFEELLDFIEEAQLDRVGA 332

Query: 365 FKYSPRLGTPGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKH 421
           FKYSP  G   + + + VD + + +   RL+ LQ+++   +++     VGQ + VL++  
Sbjct: 333 FKYSPVEGAASNELPDHVDPDEQEDRLARLMYLQEEISAGKLAKK---VGQTMTVLVDDV 389

Query: 422 GKEK--GKLVGRSPWLQSVV-LNSKNHNIGDIIKVRITDVKISTLYGELV 468
             +    +    +P +  +V ++ +   +G+ + V+I D     L+ E+V
Sbjct: 390 DDDGSVARSAADAPEIDGLVYIDDEQLEVGEFVTVKIIDSDEHDLWAEVV 439


>gi|150021041|ref|YP_001306395.1| MiaB-like tRNA modifying enzyme YliG [Thermosipho melanesiensis
           BI429]
 gi|238066621|sp|A6LM59|RIMO_THEM4 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|149793562|gb|ABR31010.1| MiaB-like tRNA modifying enzyme YliG [Thermosipho melanesiensis
           BI429]
          Length = 427

 Score =  166 bits (420), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 130/453 (28%), Positives = 222/453 (49%), Gaps = 41/453 (9%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHI----REKAAEKVYS 82
           F+V+  GC  N  D   ++      G   V+++ DAD ++++TC      ++++ E++ S
Sbjct: 3   FYVEVLGCPKNEADCALLKSHLRKMGNNIVDNLSDADAVIIDTCGFILDAKKESIEEILS 62

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
           ++           K+G +L V V GC+ Q  G+E+ +  P V+   G      LP     
Sbjct: 63  YV---------EYKKGKNLKVFVTGCLVQRFGKELKKEIPEVDGWFGV-----LPPKEIA 108

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
              GKR V     + +  E +   +G  +   G  A++ I +GCD+ C+FC +P  +G  
Sbjct: 109 THIGKRNV-----IPEVPEPVYNFEGRVDN--GQYAYVKISDGCDRACSFCTIPLFKGSF 161

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLV 261
            SR +  ++ E   LI+  + EI L+ Q+     G G+D   K    +LL  ++++ G  
Sbjct: 162 KSRKIDDILKEIEFLIERKIKEIILVAQDTT---GYGIDIYRKQMLPELLKRINDLSGDF 218

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
            +R    HP  ++D +I+A    D ++ Y  +PVQ+GSD+ILK MNR     +   + ++
Sbjct: 219 WVRVMYMHPDHITDDIIEAFS-YDKVLKYFDIPVQNGSDKILKLMNRSRKTRQLYSLFEK 277

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           IR+   D  + +  IVGFPGET  DF  T+  + ++ + +  +F YS        ++  +
Sbjct: 278 IRNFYSDAILRTSIIVGFPGETRKDFDETLKFIKEVKFDRLGAFIYSDEEEASSFSLSGK 337

Query: 382 VDENVKAERLLCLQKKLREQQVSF--NDACVGQIIEVLIEKHGKEKGKLVGRS----PWL 435
           V   +  ERL  L     + Q+SF  N+  VG+ ++VL ++   E G L+GRS    P +
Sbjct: 338 VPREIAEERLEELMD--IQSQISFEKNEKLVGKKLKVLFDEE--EDGVLIGRSYMDAPEI 393

Query: 436 QSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            + V        G    V+IT   I  L GE+V
Sbjct: 394 DANVFVRGEFKKG-FFDVKITSADIYDLEGEIV 425


>gi|124005536|ref|ZP_01690376.1| conserved hypothetical protein [Microscilla marina ATCC 23134]
 gi|123988970|gb|EAY28563.1| conserved hypothetical protein [Microscilla marina ATCC 23134]
          Length = 437

 Score =  166 bits (420), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 131/453 (28%), Positives = 223/453 (49%), Gaps = 46/453 (10%)

Query: 31  SYGCQMNVYDS------LRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + GC  N+ DS      LR  D+  +  +E  N  D+A+++++NTC   E A ++    +
Sbjct: 15  TLGCSKNLVDSENILTQLRGNDIAVT--HEAQN--DEANVVIVNTCGFIENAKQESIDTI 70

Query: 85  GRIRNLKNSRIKEGGDL-LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
                L+ +  KE G +  + V GC++Q   +++ +    V+   G +    LP LL++ 
Sbjct: 71  -----LQYADAKEQGLIDKLYVTGCLSQRYKDDLEKEITTVDAFFGTRD---LPLLLKKF 122

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           +        DY  E   ERL+     Y       A++ I EGCD+ C+FC +P  RG  +
Sbjct: 123 K-------ADYKHELVGERLTTTPRHY-------AYMKIAEGCDRPCSFCAIPIMRGKHV 168

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVR 262
           S  + ++V  A+ +  NG  E+ L+ Q++  +   GLD  +K   ++L+  L++++G+  
Sbjct: 169 SHPMEELVKSAQTMAKNGTKELILIAQDLTYY---GLDLYKKRNLAELMARLADVEGIEW 225

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R   ++P      ++ A      +  YL +P+Q GS  +LK M R  T  +  Q+ID I
Sbjct: 226 IRLQYAYPAGFPLDILDAIKQYPNVCNYLDMPLQHGSSNVLKLMRRGITREKTEQLIDTI 285

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R   P+IA+ +  I G PGET+ DF      V+K  + +   F YS    T    M + V
Sbjct: 286 RQKVPEIALRTTLIAGHPGETEADFEEMYTFVEKSRFDRLGIFTYSHEDNTHSFTMKDDV 345

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSV 438
            E VK +R   +    +E     N   VG+ ++V+I++  KE G  +GR    SP + + 
Sbjct: 346 PEEVKEDRAGQVMALQQEISAELNQQKVGKTLKVMIDR--KEGGYFIGRTESDSPEVDNE 403

Query: 439 VLNSKNHN---IGDIIKVRITDVKISTLYGELV 468
           VL S  +    +G+   ++I +     LYGELV
Sbjct: 404 VLISAENTYLPVGEFAPIKIINATEFDLYGELV 436


>gi|163852140|ref|YP_001640183.1| MiaB-like tRNA modifying enzyme [Methylobacterium extorquens PA1]
 gi|163663745|gb|ABY31112.1| MiaB-like tRNA modifying enzyme [Methylobacterium extorquens PA1]
          Length = 410

 Score =  166 bits (420), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 113/355 (31%), Positives = 176/355 (49%), Gaps = 38/355 (10%)

Query: 31  SYGCQMNVYDS--LRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           ++GC++N  +S  LR      ++G          DL+V+NTC +  +A  +    + R+ 
Sbjct: 7   TFGCRLNTVESEVLRGHAEPGAEGR---------DLVVVNTCAVTAEAGRQARKAIRRL- 56

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRS----PIVNVVVGPQTYYRLPELLERAR 144
               SR + G +  +VV GC     G E+ R S    P V  +VG     R        +
Sbjct: 57  ----SRERPGAE--IVVTGC-----GAEVERASYAAMPEVARLVGNAAKLRPASW----Q 101

Query: 145 FGKRVVDTDYSVEDKFERLSIVD-GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            G      D       E   I    G+ R     AF+ +Q GCD  CTFCV+P+ RG   
Sbjct: 102 SGTAPAPEDIMAVRTAEPTHITTMSGHTR-----AFVPVQNGCDHRCTFCVIPFGRGNSR 156

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           S  L++ V + R+++++G CE+ L G ++ A+ G+ LD E      +   L+E+  LVRL
Sbjct: 157 SVPLAEAVAQVRRIVEHGGCEVVLTGVDLTAY-GRDLDSELSLGRLVRTILAEVPDLVRL 215

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R ++    +    LI A  +   LMP++HL +Q+G D ILK M RRH+  +  ++ + +R
Sbjct: 216 RLSSIDSVEADAELIAAFAEEPRLMPHVHLSLQAGDDLILKRMKRRHSRADAIRLCETLR 275

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
            +RP +   +D I GFP ET+  F  ++DLV + G      F YSPR  TP + M
Sbjct: 276 DLRPGLVFGADLIAGFPTETEAQFARSLDLVAECGLTHLHVFPYSPRPDTPAARM 330


>gi|227539201|ref|ZP_03969250.1| 2-methylthioadenine synthetase [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227240883|gb|EEI90898.1| 2-methylthioadenine synthetase [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 444

 Score =  166 bits (420), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 129/455 (28%), Positives = 223/455 (49%), Gaps = 39/455 (8%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVN---SMDDADLIVLNTCHIREKAAEKVYS 82
           R  V + GC  N++DS  +         E V+   ++ + D++V+NTC   + A ++   
Sbjct: 16  RVNVITLGCSKNIHDSEVLMGQLKGNQMEVVHEASNIQNNDIVVINTCGFIDNAKQESID 75

Query: 83  FLGRIRNLKNSRIKEGGDL-LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
            +     L+ S +KE G +  V+V GC+++    E+      V+   G      LPELL 
Sbjct: 76  TI-----LQYSELKEQGKINKVIVTGCLSERYKPELQAEISSVDAYFGTND---LPELLS 127

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
                   +  DY  E   ER+      +       ++  I EGC++ C+FC +P  RG 
Sbjct: 128 S-------IGADYRHELLGERMLSTPSHF-------SYFKIAEGCNRPCSFCAIPLMRGK 173

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGL 260
            +S+S+  +V EA+ L  NG  E+ L+ Q++  +   GLD   K   SDLL +LS++ G+
Sbjct: 174 HVSKSMEDLVKEAKFLASNGTKELILIAQDLTYY---GLDIYGKRNLSDLLRNLSDVDGI 230

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
             +R   ++P      ++ A  +   +  YL +P+Q  SD +LKSM R  T  +   +++
Sbjct: 231 EWIRLQYAYPSGFPMDILDAMAERSNICNYLDMPLQHISDNMLKSMRRGTTKQKQIDLVN 290

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           +IR   PDIA+ +  I G+PGET+ DF+  ++ V+   + +   F YS    T   ++ +
Sbjct: 291 QIRDKVPDIALRTTLICGYPGETEQDFQEMLEWVEDSRFDRLGCFTYSHEEKTHAYSLTD 350

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQ 436
            + E VK  R+  + +  +      N   +G+I +VL++K   +    +GR    SP + 
Sbjct: 351 DIPEEVKESRVEQIMEVQQGISYDINQEKIGKIYKVLVDK--VDGDYFIGRTEYDSPEVD 408

Query: 437 SVVLNSKNH---NIGDIIKVRITDVKISTLYGELV 468
           + VL S       IGD ++V+I   +   LYG +V
Sbjct: 409 NEVLISAKDAYARIGDFVQVKIDRAEDFDLYGTIV 443


>gi|319780719|ref|YP_004140195.1| MiaB-like tRNA modifying enzyme [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317166607|gb|ADV10145.1| MiaB-like tRNA modifying enzyme [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 437

 Score =  166 bits (419), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 123/404 (30%), Positives = 193/404 (47%), Gaps = 34/404 (8%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V ++GC++N Y+S  M     S G   +    +   ++ NTC +  +A  +    + + R
Sbjct: 15  VVTFGCRLNTYESQVMRREAESAGLGAL----EGGAVIFNTCAVTGEAVRQAKQAIRKAR 70

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ------TYYRLPEL--- 139
              N R +      ++V GC AQ E E+       V++V+G +      +Y  LP+    
Sbjct: 71  R-DNPRAR------IIVTGCAAQTEPEKFAAMDE-VDLVLGNEEKLNANSYRALPDFGVN 122

Query: 140 -LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
             E+AR     V+  +SV +    +  VD    R R   AF+ +Q GCD  CTFC++PY 
Sbjct: 123 DTEKAR-----VNDIFSVRETAGHM--VDAIEGRAR---AFVQVQNGCDHRCTFCIIPYG 172

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258
           RG   S  +  VV++ ++L  NG  EI L G ++ ++ G  L G       +   L ++ 
Sbjct: 173 RGNSRSVPMGAVVEQVKRLAGNGYAEIVLTGVDMTSF-GADLPGAPKLGKLVKTILKQVP 231

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
            + RLR ++    +  D L+ A      LMP+LHL +QSG D ILK M RRH   +  + 
Sbjct: 232 DVKRLRLSSIDSIEADDDLLDAIATEPRLMPHLHLSLQSGDDMILKRMKRRHLRDQSIRF 291

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
            + +R +RP I   +D I GFP ETD+ F  +  +V++ G      F +SPR GTP + M
Sbjct: 292 CEDVRKLRPGIVFGADIIAGFPTETDEMFENSEKIVEECGLTHLHVFPFSPREGTPAARM 351

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422
             Q+   V  +R   L+       V       G    +LIE+ G
Sbjct: 352 -PQLRREVVKQRAARLRAAGEVAYVRHLSLLTGTRQSILIERDG 394


>gi|45357975|ref|NP_987532.1| MiaB-like tRNA modifying protein [Methanococcus maripaludis S2]
 gi|44920732|emb|CAF29968.1| Protein of unknown function UPF0004:Deoxyribonuclease/rho
           motif-related TRAM [Methanococcus maripaludis S2]
          Length = 425

 Score =  166 bits (419), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 124/456 (27%), Positives = 232/456 (50%), Gaps = 46/456 (10%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + +++ YGC +N  D+  +++     + +E  +++DD+D+IV+NTC +R++   ++ S +
Sbjct: 2   KIYIEGYGCTLNTADTQIIKNSVNEFEDFELTDNVDDSDIIVINTCIVRQETEHRMISRI 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR--------- 135
              ++L         D  VVVAGC+A+A  ++I     + +V++ P+             
Sbjct: 62  EYFKSL---------DKKVVVAGCMAKALSKKI---ENLADVLIMPREAQHSGNILKDKL 109

Query: 136 LPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
           L +  E+     + ++ +  + +K +++S         +G+   L I EGC   CT+C+V
Sbjct: 110 LKDFSEKNNESTQNLNFEDKLNEKIKKVS--------SQGLITALPICEGCLGSCTYCIV 161

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
              RG   S     +V +A +L+ +G   + +  Q+   +   GLD    +  +L+  +S
Sbjct: 162 KRARGNLASYDRDLIVKKAEELVKSGTKCLLVTAQDTACY---GLDNND-SLPNLINDIS 217

Query: 256 EIKGLVRLRYTTSHPR---DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
           EI     +R    H +    + D LI++     V+  +LHLP+QSG D++LK MNR +T 
Sbjct: 218 EIPEKFAMRIGMMHAKFAEPILDELIESFKSEKVV-KFLHLPIQSGDDQVLKDMNRNYTV 276

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
            EY  +++  +S   ++  ++D IVGFP ET++ F  T+++V KI      + KYS R  
Sbjct: 277 DEYISVLNEFKSKIKNLNFTTDVIVGFPTETEEAFENTLEIVKKIKPDFTHAAKYSQRKY 336

Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS 432
           T  + +L+QVD  ++ ER   L +  RE     N   +G+  E+L+ K        +G +
Sbjct: 337 TKAA-ILKQVDTKIRKERSEILNELRRELSYENNKRHIGETFEILVTKDN------MGVT 389

Query: 433 PWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
              ++V+   +   IG+  +V+IT  K   L G+L+
Sbjct: 390 DNCKNVIF-EEPAKIGEFKRVKITGAKTFGLSGKLI 424


>gi|167463031|ref|ZP_02328120.1| MiaB-like tRNA modifying enzyme YliG [Paenibacillus larvae subsp.
           larvae BRL-230010]
          Length = 325

 Score =  166 bits (419), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 103/338 (30%), Positives = 187/338 (55%), Gaps = 20/338 (5%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++  V + GC+ N+ DS  M  +   +G+  V+  ++A +I++NTC   + A E+  + +
Sbjct: 3   EKVKVVTLGCEKNLVDSEIMGGLINERGFSLVDQAEEATVIIVNTCGFIDAAKEESINTI 62

Query: 85  GRIRNLKNSRIKEGGDL-LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
                L  + +K+   L  ++V+GC+ Q   EE+++  P ++ +VG   ++++ +++++A
Sbjct: 63  -----LDMAELKQTAHLKALIVSGCLTQRYKEELMKELPEIDGIVGTGDFHKINDIIDQA 117

Query: 144 RFGKRVV---DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
             GK+ +   +  ++ E    R  I    Y      TA++ I EGCD  CTFC +P  RG
Sbjct: 118 LNGKKPILVGNPVFNYEAALPR-RITTPRY------TAYVKIAEGCDNNCTFCSIPIMRG 170

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKG 259
              SRS+  ++ E R+L + GV EI+L+ Q+   +   G+D  +     +LL  +S I+G
Sbjct: 171 KFRSRSMESILAEVRQLSEQGVKEISLIAQDSTNY---GIDLYDSYVLPELLNKVSAIEG 227

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           +  +R   ++P   +D LI+       +  Y+ LP+Q   D +LK M R     + R++I
Sbjct: 228 IEWVRLHYAYPGFFTDELIETIATNPKICKYIDLPLQHSEDSVLKRMRRPGRQKDARELI 287

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
            +IRS  PD A+ +  IVGFPGET++DF++ +D V +I
Sbjct: 288 RKIRSRIPDAALRTSIIVGFPGETEEDFQSLVDFVKEI 325


>gi|149204848|ref|ZP_01881810.1| MiaB-like tRNA modifying enzyme [Roseovarius sp. TM1035]
 gi|149141718|gb|EDM29773.1| MiaB-like tRNA modifying enzyme [Roseovarius sp. TM1035]
          Length = 419

 Score =  166 bits (419), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 125/439 (28%), Positives = 208/439 (47%), Gaps = 51/439 (11%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  M+++    G          + +++NTC +  +A  K    + R+R  
Sbjct: 9   TLGCRLNAYETEAMKELAGQAGL--------GNAVIVNTCAVTSEAVRKARQEIRRLR-- 58

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG------PQTYYRLPE--LLER 142
                +E  +  ++V GC AQ E  E     P V+ V+G        T+ RL    + E 
Sbjct: 59  -----RENPEARLIVTGCAAQTE-PETFAAMPEVDAVIGNTEKMAADTWARLAGDFIGET 112

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            R    +VD   SV +    L  +DG  +R R   A++ +Q GCD  CTFC++PY RG  
Sbjct: 113 ERV---LVDDIMSVRETAGHL--IDGFGSRSR---AYVQVQNGCDHRCTFCIIPYGRGNS 164

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            S     VV++ ++L+  G  E+ L G ++ +W G  L         ++  L  +  L R
Sbjct: 165 RSVPAGVVVEQIKRLVGAGYNEVVLTGVDLTSW-GADLPAAPKLGDLVMRILRLVPDLPR 223

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LR ++    ++ + L++A      LMP+LHL +Q G D ILK M RRH   +  +  +  
Sbjct: 224 LRISSIDSIEVDENLMQAIATEPRLMPHLHLSLQHGDDLILKRMKRRHLRDDAIRFAEEA 283

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R +RP++   +D I GFP ET+  F  ++ LV++        F YSPR GTP + M +  
Sbjct: 284 RRLRPEMTFGADIIAGFPTETEAAFENSLRLVEECHLTWLHVFPYSPRPGTPAARMPQ-- 341

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL-----VGRSPWLQS 437
              VK          ++ +      A  G++   L  + G+E   L     +GR+     
Sbjct: 342 ---VKG-------PAIKARAARLRAAGEGRVAAHLAAQQGREHAVLMEAPRMGRTEQFTE 391

Query: 438 VVLNSKNHNIGDIIKVRIT 456
           VV + ++H  G I++ R+T
Sbjct: 392 VVFD-RDHPEGQIVRARVT 409


>gi|325298142|ref|YP_004258059.1| MiaB-like tRNA modifying enzyme [Bacteroides salanitronis DSM
           18170]
 gi|324317695|gb|ADY35586.1| MiaB-like tRNA modifying enzyme [Bacteroides salanitronis DSM
           18170]
          Length = 471

 Score =  166 bits (419), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 126/433 (29%), Positives = 213/433 (49%), Gaps = 29/433 (6%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N  ++  +  M    G   V   + AD+ ++NTC + E A +K    + R+   
Sbjct: 49  TLGCKLNFAETSTVGKMLKEAGVRTVRPGEKADICIVNTCSVTEVADKKCRQAIHRL--- 105

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL---ERARFGK 147
               +K      VVV GC AQ + E++      V++V+G +    L + L   E+   G+
Sbjct: 106 ----VKNHPGAFVVVMGCYAQLKPEQVADIEG-VDLVLGAEQKGDLMKYLGNLEKHAHGE 160

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
            V     +V+D    +     G +R R    FL +Q+GCD FC++C +P+ RG   +  +
Sbjct: 161 AVTT---AVKDIRTFVPSCSRG-DRTR---YFLKVQDGCDYFCSYCTIPFARGRSRNGKI 213

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
           + +V++AR++ + G  EI L G N+  + GK   GE  TF  L+ +L +++G+ R R ++
Sbjct: 214 ADLVEQARQVAEEGGKEIVLTGVNIGDF-GK-TTGE--TFFSLVQALDKVEGIERYRISS 269

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
             P  ++D +I         MP+ H+P+QSG D +LK M RR+    +   +  I+S  P
Sbjct: 270 IEPNLLTDEIIAFVAQSKRFMPHFHIPLQSGCDEVLKLMRRRYDTQLFASKVHTIKSYMP 329

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM---LEQVDE 384
           D  I  D IVG  GET + F    + +  +   Q   F YS R GT    +   +   D+
Sbjct: 330 DAFIGVDVIVGTRGETPEYFEKAYEFIQGLDVTQLHVFSYSERPGTQALKIDYVVSPEDK 389

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
           + +++RLL L +   E+  +F    +GQ   VL+E H K    + G +P    V L    
Sbjct: 390 HARSQRLLALSE---EKTHAFYARHIGQEATVLVE-HAKAGMPMHGFTPNYIRVELERNE 445

Query: 445 HNIGDIIKVRITD 457
                +++VR+ D
Sbjct: 446 ALDNQMVRVRLGD 458


>gi|15895089|ref|NP_348438.1| Fe-S oxidoreductase [Clostridium acetobutylicum ATCC 824]
 gi|81530279|sp|Q97I40|RIMO_CLOAB RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|15024787|gb|AAK79778.1|AE007690_5 Predicted Fe-S oxidoreductase [Clostridium acetobutylicum ATCC 824]
 gi|325509227|gb|ADZ20863.1| Fe-S oxidoreductase [Clostridium acetobutylicum EA 2018]
          Length = 445

 Score =  166 bits (419), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 130/441 (29%), Positives = 226/441 (51%), Gaps = 25/441 (5%)

Query: 26  RFFVKSYGCQMNVYDS-LRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +F + S GC  N  DS + +  M  ++ YE VN   +AD+I++NTC   E A ++  + +
Sbjct: 5   KFGLVSLGCDKNRVDSEIILGSM--NRDYEIVNDPREADVILVNTCGFIESAKQESINTI 62

Query: 85  GRIRNLKNSRIKEGGDLLVVVA-GCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
                L+ ++ KE  +  +++A GC+ Q  G+E+    P ++ ++G   Y  L + +E  
Sbjct: 63  -----LEMNKYKEKYNCKMLIATGCLTQRYGKELKELVPEIDAILGVNDYKSLDDAIEDF 117

Query: 144 -RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
              GK+ +  +YS +   E   I+  G       ++++ I EGC+  C++C++P  RG  
Sbjct: 118 FNLGKKDIYCNYSDQSINEGKRIITTG-----EYSSYVRISEGCNNSCSYCIIPKIRGKY 172

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR    ++DE R+L +NG  E+ L+ Q+   + G  L G K    +LL  +S I+G+  
Sbjct: 173 RSRQFENIIDEVRELSENGTKEVILIAQDTTRY-GVDLYGRK-RLHELLKEMSLIQGIEW 230

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R    +P ++++ LI+     + +  Y+ +P+Q  SD ILK+M R+    E    +++I
Sbjct: 231 IRIMYCYPEEITEELIEEIASNEKVCNYIDMPIQHISDNILKNMFRKTRKSEILDKVEKI 290

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R   P+IAI +  IVGFPGET+ DF    D V          F+YS   GT  + M  Q+
Sbjct: 291 RKKVPNIAIRTSLIVGFPGETEGDFNELCDFVKDANINNLGVFRYSREEGTKAALMPMQI 350

Query: 383 DENVKAERLLCLQKKLREQQVS--FNDACVGQIIEVLIEKHGKE--KGKLVGRSPWLQSV 438
            + VK +R   +   L +QQVS   N   +G++ +V++E    +   G+    +P +   
Sbjct: 351 ADTVKEKREEDIM--LIQQQVSKNLNAKKIGKVYKVIVEGFNGDYWYGRNFEMAPEIDGK 408

Query: 439 VLNSKNHNI--GDIIKVRITD 457
           V       I  G  I ++IT+
Sbjct: 409 VFFKSQSEIKVGSFINIKITE 429


>gi|332285816|ref|YP_004417727.1| hypothetical protein PT7_2563 [Pusillimonas sp. T7-7]
 gi|330429769|gb|AEC21103.1| hypothetical protein PT7_2563 [Pusillimonas sp. T7-7]
          Length = 438

 Score =  166 bits (419), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 139/467 (29%), Positives = 222/467 (47%), Gaps = 54/467 (11%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  FV S GC   + DS R+     ++GY      D+AD++V+NTC   + A  +    
Sbjct: 4   PKVGFV-SLGCPKALVDSERILTQLRTEGYAITPDYDNADVVVVNTCGFIDSAKAESLDA 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRS--PIVNVVVGPQTYYRLPELLE 141
           +G         I E G   V+V GC+     EE L R   P V  V GPQ Y ++     
Sbjct: 63  IGEA-------IAENGK--VIVTGCMGV---EESLIRDVHPAVLAVTGPQQYEQV----- 105

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
             R        + S  D +  L    G     R   A+L I EGC+  C+FC++P  RG 
Sbjct: 106 -VRAVHEAAPPNLS-HDPYIDLVPPQGIKLTPRHY-AYLKISEGCNHRCSFCIIPSMRGN 162

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDL 250
            +SR +  V+ EA +L+  GV E+ ++ Q+ +A           W G+ +   K   + L
Sbjct: 163 LVSRPIGDVMGEAERLVKAGVKELLVISQDTSAYGVDVKFRSGFWNGRPI---KTHMTQL 219

Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
             +L+      RL Y   +P    D +I    D  +L PYL +P Q  S +ILK+M R  
Sbjct: 220 SEALAGFGVWTRLHYVYPYPH--VDEVIPLMADGKIL-PYLDIPFQHASPKILKAMKR-- 274

Query: 311 TAYEYRQI--IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
            A+E R +  I   R   PD+ + S FIVGFPGET++DF+  +D + +    +   F+YS
Sbjct: 275 PAFEDRTLARIKNWRETCPDLTLRSTFIVGFPGETEEDFQYLLDWMTEAQLDRVGCFQYS 334

Query: 369 PRLGTPGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK 425
           P  G   + + + V + VK E   R +  Q+ +   +++     +G+ I+VLI++   + 
Sbjct: 335 PVEGARANELADHVPDEVKQERWDRFMAHQQAISTARLANK---IGREIDVLIDEIDDDG 391

Query: 426 --GKLVGRSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468
             G+    +P +   V  S +  +  GD+++VR+TD     LY + +
Sbjct: 392 AIGRSSADAPEIDGNVFVSSDKVLKPGDMVRVRVTDSDEYDLYADAI 438


>gi|167626684|ref|YP_001677184.1| ribosomal protein S12 methylthiotransferase [Francisella
           philomiragia subsp. philomiragia ATCC 25017]
 gi|238065359|sp|B0U054|RIMO_FRAP2 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|167596685|gb|ABZ86683.1| 2-alkenal reductase [Francisella philomiragia subsp. philomiragia
           ATCC 25017]
          Length = 439

 Score =  166 bits (419), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 130/454 (28%), Positives = 216/454 (47%), Gaps = 46/454 (10%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           +P+  FV S GC  N+ DS R+     ++GY+ V+S D+AD++++NTC     A ++   
Sbjct: 4   IPKIGFV-SLGCPKNLVDSERIITKLKAEGYDLVDSYDNADMVIVNTCGFLNSAIDESLE 62

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +G         I E G +LV   GC+   + + I  +   V  + GPQ Y  L   +E 
Sbjct: 63  VIGE-------AIAENGKVLV--TGCLGN-KADLIKEKHSEVLSITGPQDYENL---IEA 109

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
                 +   D+      + + +    Y       ++L I EGC+  CTFC++P  RG  
Sbjct: 110 VHTHAPIFVNDFVSLVPPQGIKLTPRHY-------SYLKISEGCNNTCTFCIIPDIRGKL 162

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-------RGKGLDGE-KCTFSDLLYSL 254
            SRS+  ++ EA KL + GV E+ ++ Q+ +A+        G   D E +    DL  +L
Sbjct: 163 KSRSIDNIMKEAEKLKNAGVKELLVISQDTSAYGVDIKYKSGIWNDKEYQSNILDLATAL 222

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
            ++    RL Y   +P       + A G +   +PYL +P+Q  S  +LK M R     +
Sbjct: 223 GDLDMWTRLHYVYPYPHVDKIVPLMAQGKI---LPYLDVPLQHSSPEVLKRMKRPAHTQK 279

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
               I++ R + PDI I S FIVGFPGET+ DF   +D  +K    +   FKYS   G  
Sbjct: 280 TLDRINKWRDICPDITIRSTFIVGFPGETEADFEHLLDFAEKAQLDRVGCFKYSEVEGAK 339

Query: 375 GSNMLEQVDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR 431
            +     + E VK +RL   + LQ ++   ++      VG   +V+I+   K++   +GR
Sbjct: 340 ANQFDNLISEEVKQQRLDEFMGLQAQISADKLQ---RFVGTEQQVIIDVINKDENYAIGR 396

Query: 432 SPWL------QSVVLNS--KNHNIGDIIKVRITD 457
           + +       Q ++ ++  +N  +G+   V IT+
Sbjct: 397 TKYDAPEVDGQVIIGDALERNLKVGEFATVEITE 430


>gi|213158375|ref|YP_002319673.1| hypothetical protein AB57_2321 [Acinetobacter baumannii AB0057]
 gi|301346284|ref|ZP_07227025.1| ribosomal protein S12 methylthiotransferase [Acinetobacter
           baumannii AB056]
 gi|301595689|ref|ZP_07240697.1| ribosomal protein S12 methylthiotransferase [Acinetobacter
           baumannii AB059]
 gi|238065267|sp|B7I9V4|RIMO_ACIB5 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|213057535|gb|ACJ42437.1| conserved hypothetical protein [Acinetobacter baumannii AB0057]
          Length = 447

 Score =  166 bits (419), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 133/467 (28%), Positives = 219/467 (46%), Gaps = 50/467 (10%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  FV S GC   + DS R+     + GY+  +  D ADL+V+NTC   E A ++    
Sbjct: 4   PKVGFV-SLGCPKALVDSERILTQLKTDGYQVASDYDGADLVVVNTCGFIESAVQESLDA 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G   + +N R        V+V GC+ + E ++I +  P V  V G   Y  + E +   
Sbjct: 63  IGEAMS-ENGR--------VIVTGCLGKDE-DKIRQMHPNVLKVTGAAAYQDVMEAVHEY 112

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
                         + F  L + + G        A+L I EGC+  CTFC++P  RG  +
Sbjct: 113 VPAP-------PKHNPFIDL-VPEQGIRLTPKHYAYLKISEGCNHRCTFCIIPSMRGDLV 164

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLY 252
           SR +  V++EA  L   GV EI ++ Q+ +A           W G+ +   K  F D+  
Sbjct: 165 SRPVGSVLEEAAALKRAGVKEILVISQDTSAYGVDTKYKLDFWNGQPV---KTKFFDMCE 221

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
           +L ++   VRL Y   +P   +   + A G +   +PYL +P Q  S R+LK M R   +
Sbjct: 222 ALGQLGIWVRLHYVYPYPHVDAVIDLMAQGKI---LPYLDIPFQHASPRVLKLMKRPAHS 278

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
               + I   R   P++ I S F+VGFPGET++DF+  +D + +    +   F YSP  G
Sbjct: 279 ENTLEKIKLWREKCPNLVIRSTFVVGFPGETEEDFQILLDWLVEAQLDRVGCFTYSPVEG 338

Query: 373 TPGSNMLEQVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV 429
              +++ + V E +K    ER + +Q+++   ++      +GQ + VL++    E    V
Sbjct: 339 ATANDLPDHVPEEIKQERYERFMQVQQQISAAKLQKR---IGQTMTVLVDSLEDEYPVAV 395

Query: 430 GRS----PWLQSVV----LNSKNHNIGDIIKVRITDVKISTLYGELV 468
            RS    P +   V    ++      GD+++V ITD     L+ +L+
Sbjct: 396 ARSYADAPEIDGNVFVEDIDKSTIQPGDMLEVEITDADEYDLFAKLI 442


>gi|296242700|ref|YP_003650187.1| RNA modification enzyme, MiaB family [Thermosphaera aggregans DSM
           11486]
 gi|296095284|gb|ADG91235.1| RNA modification enzyme, MiaB family [Thermosphaera aggregans DSM
           11486]
          Length = 427

 Score =  166 bits (419), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 117/440 (26%), Positives = 217/440 (49%), Gaps = 43/440 (9%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R +V++YGC +N  D   M+ +   +G+  V++  +AD++++NTC +R    + + + + 
Sbjct: 2   RVYVETYGCALNRSDEALMKHVLIERGHTIVDNPSNADVVIINTCTVRLDTEQHMLNRIS 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +R L  +R    G L  +VAGC+  A+  ++ + +P  ++V  PQ   R+         
Sbjct: 62  SLRELTQAR---KGKL--IVAGCLPAAQPYKVAKTAPEASLV-SPQNSSRI--------- 106

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKR------GVTAFLTIQEGCDKFCTFCVVPYTR 199
                   Y   +   R+ ++DG   R R         A + IQEGC   C+FC+  + R
Sbjct: 107 --------YVAVESDGRVVMLDGVRERDRIGLCFENKVAPIPIQEGCLSNCSFCITKHAR 158

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
            + +S ++  +V      +  G  EI L G ++  + G  L G++    +L+  +S + G
Sbjct: 159 RVLVSHTVEAIVKSVETAVRMGAVEIQLTGMDLGTY-GMELYGKR-YLPELVRRVSTLPG 216

Query: 260 LVRLRYTTSHPRDMS---DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
             R+R    +P  +    D L++A      +  +LH+P+QSGSD++LK+MNR++T  EYR
Sbjct: 217 EFRVRIGMINPEHLPPILDELLEAVKSDRRIYRFLHIPLQSGSDKVLKAMNRKYTVDEYR 276

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
            +I  ++    D++I++D IVG P E ++DF  T+ ++ ++ + +     YS R  T  +
Sbjct: 277 GLIKEVKQKISDVSIATDIIVGHPLEDEEDFEETLKIIRELEFERVHFAGYSVRPNTLSA 336

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQ 436
            M   +   ++ ER+L + + + E      +  +G  + V I ++       VGR     
Sbjct: 337 GM-PNIPTRIRKERMLRMLETVEEVGFKVREKYIGLTLPVFITEYS---NTWVGRLDNYI 392

Query: 437 SVVLNSKNHNIGDIIKVRIT 456
            V+L       GD +K  IT
Sbjct: 393 PVILME-----GDSLKYGIT 407


>gi|310827655|ref|YP_003960012.1| hypothetical protein ELI_2066 [Eubacterium limosum KIST612]
 gi|308739389|gb|ADO37049.1| hypothetical protein ELI_2066 [Eubacterium limosum KIST612]
          Length = 446

 Score =  166 bits (419), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 125/439 (28%), Positives = 206/439 (46%), Gaps = 19/439 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++  + + GC  N  D+ +M  M    GY        A++IV+NTC   + A E+   ++
Sbjct: 2   KKIHITTLGCDKNTVDAQQMLGMLAENGYTIEPDPARAEVIVVNTCCFIQAAKEESIEYI 61

Query: 85  GRIRNLKNSRIKEGGDL-LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
                L+ +  KE G   +++ AGC+A+   +E+    P V+  +G      + +L++  
Sbjct: 62  -----LEYAGYKESGPCEILIAAGCMAERYHKELAEEMPEVDGFLGVGHIDNIIDLIKDI 116

Query: 144 RFGKRVVDTDYSVEDKF-ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
             G+       +++  + E +      Y     VTA+L I EGCD  CT+CV+P  RG  
Sbjct: 117 EGGRGREAFSGNIDRPYVEEMP----RYIEDNTVTAYLKISEGCDHHCTYCVIPKIRGRH 172

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SRS   +  EA  L   GV E+ ++ Q++  + G  L+GE    + LL  LSE      
Sbjct: 173 RSRSPEAIYKEAAYLEKKGVRELIIIAQDITQY-GNDLEGE-INLAGLLTRLSEDFSFRW 230

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R    +P  +++ L+      D L  Y  +P+Q   D+ILK M R        + I  I
Sbjct: 231 IRLLYMYPEGITEELLDVIASHDNLCHYFDIPIQHTEDKILKRMGRPVNKKHLFEQIGLI 290

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R   PD  + +  I GFPGET++D    +  +  +   +   FKYS   GTP +   +QV
Sbjct: 291 REKLPDAVLRTAIITGFPGETEEDHEGLLASLRALKINRLGVFKYSQEEGTPAAEFPDQV 350

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK---HGKEKGKLVGRSPWLQSVV 439
           DE V   R   +  +        N+A VG+ ++VLIE+    G   G+  G +P +  +V
Sbjct: 351 DEAVMERRWNEIYGQQEGITAEANEAFVGRSLDVLIEEMEAPGTYSGRTYGDAPEIDCMV 410

Query: 440 LNSKNH---NIGDIIKVRI 455
             +      +IG+  KV+I
Sbjct: 411 FANSGEEVLDIGNFYKVKI 429


>gi|242281025|ref|YP_002993154.1| MiaB-like tRNA modifying enzyme YliG [Desulfovibrio salexigens DSM
           2638]
 gi|242123919|gb|ACS81615.1| MiaB-like tRNA modifying enzyme YliG [Desulfovibrio salexigens DSM
           2638]
          Length = 437

 Score =  165 bits (418), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 121/414 (29%), Positives = 198/414 (47%), Gaps = 26/414 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC-HIREKAAEKVYSFL 84
           R +  S GC  N  D+ RM   F        ++ +++DL+++NTC  I     E V + L
Sbjct: 7   RIYTISLGCPKNRVDTERMLGAF-GDNMIAASTAEESDLVLINTCGFIGPATEESVDTIL 65

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
                +K+   +     ++ VAGC+    G+ +  + P V++ +      + P L  +A 
Sbjct: 66  ETADAIKDLNPRP----VLAVAGCLVSRYGK-LTEQMPEVDLWLSTHELDQWPALAAKA- 119

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
                +  ++ V    ++ +I  G         A+L I EGC   C FC +P  RG  +S
Sbjct: 120 -----LRKEFPV---VQQRAISTGP------AYAYLKISEGCSHSCRFCTIPSIRGPHVS 165

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R L  +V+EAR ++D GV E+ ++GQ+  A+ G  LD ++     L+  L  +KG+  LR
Sbjct: 166 RKLDGLVEEARYILDQGVPELVIVGQDTTAY-GSDLDDKETNLRALIEKLLPLKGMEWLR 224

Query: 265 YTTSHPRDMSDCLIKAHGDL-DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
               +P  ++D ++         L+PY  +P+Q     +L SM R   A + R++IDR+R
Sbjct: 225 LMYLYPAGLTDSMLSFLAQAGKPLLPYFDIPIQHAHPDVLSSMGRPF-ARDPRKVIDRVR 283

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              PD  + +  IVG+PGETD+ F   +D V +  +     F Y P  GTP   M EQ+ 
Sbjct: 284 KHIPDAVLRTSIIVGYPGETDEHFNTLVDFVKETRFQNLGVFAYQPEEGTPAGEM-EQLP 342

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQS 437
           E ++ ER   L +   E      +  VG  I+VL+E+   E   L     W Q+
Sbjct: 343 EELREERREILMEVQSEISREILEEKVGDTIQVLVEEPNDEWPGLFNGRVWFQA 396


>gi|330936758|gb|EGH40924.1| ribosomal protein S12 methylthiotransferase [Pseudomonas syringae
           pv. pisi str. 1704B]
          Length = 477

 Score =  165 bits (418), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 146/471 (30%), Positives = 232/471 (49%), Gaps = 65/471 (13%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  FV S GC   + DS R+      +GYE V + +DAD++V+NTC   + A  +    
Sbjct: 10  PKVGFV-SLGCPKALVDSERILTQLRMEGYEVVATYEDADVVVVNTCGFIDTAKAESLEV 68

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G         IKE G   V+V GC+   +   I    P V  V GPQ Y          
Sbjct: 69  IGEA-------IKENGK--VIVTGCMG-VDASVIRNVHPSVLSVTGPQQY---------- 108

Query: 144 RFGKRVVDTDYSV----EDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
              ++VV+  + V    +D    + +V   G        A+L I EGC+  C+FC++P  
Sbjct: 109 ---EQVVNAVHDVVPPRKDHNPLIDLVPPQGVKLTPRHYAYLKISEGCNHSCSFCIIPSM 165

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA------WRGKGLDGE--KCTFSDL 250
           RG  +SR +  V+DEA++L+ +GV E+ ++ Q+ +A      +R    DG+  K   ++L
Sbjct: 166 RGKLVSRPVGDVLDEAKRLVKSGVKELLVISQDTSAYGVDVKYRTGFWDGQPVKTRMTEL 225

Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
             +L  +   VRL Y   +P       + A G    ++PYL +P Q  S +ILK M R  
Sbjct: 226 CQALGSMGVWVRLHYVYPYPHVDELIPLMAAGK---ILPYLDIPFQHASPKILKLMKR-- 280

Query: 311 TAYEYRQIIDRIRSVR---PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
            A+E + +  RI++ R   PD+ I S FIVGFPGET++DF+  +D + +    +   F+Y
Sbjct: 281 PAFEDKTLA-RIKNWREQCPDLIIRSTFIVGFPGETEEDFQYLLDWLTEAQLDRVGCFQY 339

Query: 368 SPRLGTPGSNMLEQ--VDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422
           SP  G P +N+L+   V ++VK    +R +  Q+ +   ++      +G+ IEVLI++  
Sbjct: 340 SPVEGAP-ANLLDAAIVPDDVKQDRWDRFMAHQQAISAARLQMK---IGKEIEVLIDEV- 394

Query: 423 KEKGKLVGR----SPWLQSVVL----NSKNHNIGDIIKVRITDVKISTLYG 465
            ++G  VGR    +P +   V     +      GD I  R+TD     L G
Sbjct: 395 DDRGA-VGRCFFDAPEIDGNVFIGLEDGSTVQPGDKIMCRVTDADEYDLVG 444


>gi|299531587|ref|ZP_07044992.1| MiaB-like tRNA modifying enzyme YliG [Comamonas testosteroni S44]
 gi|298720303|gb|EFI61255.1| MiaB-like tRNA modifying enzyme YliG [Comamonas testosteroni S44]
          Length = 468

 Score =  165 bits (418), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 134/484 (27%), Positives = 215/484 (44%), Gaps = 67/484 (13%)

Query: 20  QCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEK 79
           Q  +P+  FV S GC   + DS  +     ++GY+   + + ADL+++NTC   + A ++
Sbjct: 11  QTAIPKVGFV-SLGCPKALTDSELILTQLSAEGYQTSKTFEGADLVIVNTCGFIDDAVKE 69

Query: 80  VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEE-----ILRRSPIVNVVVGPQTYY 134
               +G                 V+V GC+    G+E     +    P V  V GP    
Sbjct: 70  SLDTIGEALAANGK---------VIVTGCLGAKAGKEGGSTMVAEVHPSVLAVTGPHAT- 119

Query: 135 RLPELLERARFGKRVVDTDYS----VEDKFERL---SIVDGGYNRKRGVTAFLTIQEGCD 187
                       + V+D  ++      D F  L   S  D G        A+L I EGC+
Sbjct: 120 ------------QEVMDAVHTHLPKPHDPFVDLVPGSFGDAGIKLTPKHYAYLKISEGCN 167

Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WR 236
             CTFC++P  RG  +SR +  V+ EA+ L + GV E+ ++ Q+ +A           W 
Sbjct: 168 HRCTFCIIPSMRGDLVSRPIGDVLKEAKALFEGGVKELLVISQDTSAYGVDVKYRTGFWD 227

Query: 237 GKGLDGEKCTFSDLLYSLSEIKG-LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPV 295
           GK +       +D L  L++  G  VRL Y   +P   +   + A G +   +PYL +P+
Sbjct: 228 GKPVKTRMLELADELGKLAQQHGAWVRLHYVYPYPTVDAVLPLMAEGKI---LPYLDVPL 284

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVR---PDIAISSDFIVGFPGETDDDFRATMD 352
           Q     +LK M R  +     + +DRIR  R   P++ I S FI GFPGET+++F   +D
Sbjct: 285 QHSHPDVLKRMKRPASG---EKNLDRIREWRKICPELVIRSTFIAGFPGETEEEFEHLLD 341

Query: 353 LVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQ 412
            + +    +A  F YSP  G   + +   + E V+  R     +   E         VGQ
Sbjct: 342 FIREAEIDRAGCFAYSPVEGATANELPGMLPEEVREARRARFMEVAEEVSTKRLQRRVGQ 401

Query: 413 IIEVLIEKH---GKEK--GKLVGRSPWLQSVVL------NSKNHNIGDIIKVRITDVKIS 461
           +++VL++K    GK+   G+    +P +  VV        SK + +G++I VRI   +  
Sbjct: 402 VMKVLVDKAVSLGKKGGMGRTYADAPEIDGVVHIQPPEKASKTYKVGELISVRIVGTQGH 461

Query: 462 TLYG 465
            L G
Sbjct: 462 DLVG 465


>gi|225619898|ref|YP_002721155.1| MiaB-like tRNA modifying enzyme [Brachyspira hyodysenteriae WA1]
 gi|225214717|gb|ACN83451.1| MiaB-like tRNA modifying enzyme [Brachyspira hyodysenteriae WA1]
          Length = 417

 Score =  165 bits (418), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 114/419 (27%), Positives = 214/419 (51%), Gaps = 32/419 (7%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           + ++GC++N Y+S ++     + G   +  +D+A+ I +NTC +   + +K+ S+L ++ 
Sbjct: 5   IHTFGCRLNQYESEKISYELKNLG-ANITELDNAEAIAINTCTVTNDSDKKLMSYLEKLG 63

Query: 89  NLKNSRIKEGGDLLVVVAGC-VAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147
           +++N +        V + GC V++ + +  + +    N+V+ P          ++    +
Sbjct: 64  DIQNKK--------VFLIGCYVSKKDKDSSIFKD---NIVLIPNE--------KKEEASE 104

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
            + +T Y+  +      I +  +  +    A+L IQ+GC+ FCT+C+V   RG   S   
Sbjct: 105 IIFNTLYNNSNN----KIDNPIFFPQEQSRAYLKIQDGCNVFCTYCIVSRVRGSHRSVEP 160

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI--KGLVRLRY 265
           S++ D  +   D    EI L G N+ ++        +  F+ +L ++ E   K  +R+R 
Sbjct: 161 SKIYDAVKMANDFNYKEIVLTGLNLGSYNY----NNEINFTKILQNILEYSSKYGIRIRL 216

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
           ++  P    D LI    + D+L P+ H+P+QSGS++ILK MNRR+T  +Y  I +++   
Sbjct: 217 SSIEPIYFDDGLISLFKNDDILCPHAHIPLQSGSNKILKLMNRRYTREDYLNITEKLYKT 276

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
             +++ISSD +VGFP E ++DF  T +L +K  + +   F+YS R  TP S M  QV   
Sbjct: 277 NSNMSISSDVMVGFPHEDNNDFNDTYELCEKSKFIKIHIFRYSNRENTPSSKMDNQVGYR 336

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
            K +R   L     + + S+     G+ ++++IEK   +    +G S       L+S+N
Sbjct: 337 TKLKRAKTLNNLNNKLKDSYYKNAEGRDLKIVIEK-ALQDNNYIGTSAEYLKCKLHSEN 394


>gi|187923838|ref|YP_001895480.1| MiaB-like tRNA modifying enzyme YliG [Burkholderia phytofirmans
           PsJN]
 gi|238065311|sp|B2T3U5|RIMO_BURPP RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|187715032|gb|ACD16256.1| MiaB-like tRNA modifying enzyme YliG [Burkholderia phytofirmans
           PsJN]
          Length = 461

 Score =  165 bits (418), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 135/478 (28%), Positives = 220/478 (46%), Gaps = 63/478 (13%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  FV S GC   + DS ++     ++GYE   + D ADL+V+NTC   ++A ++    
Sbjct: 13  PKVGFV-SLGCPKALVDSEQIITQLRAEGYEISGTYDGADLVVVNTCGFIDEAVQESLDA 71

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVA---QAEGEEILRR-SPIVNVVVGPQTYYRLPEL 139
           +G   N +N +        V+V GC+     A G  ++    P V  V GP   + L E+
Sbjct: 72  IGEALN-ENGK--------VIVTGCLGAKKSASGSGLIEEVHPKVLAVTGP---HALGEV 119

Query: 140 LERARFGKRVVDTDYS-VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
           ++        V T      D F  L    G     R   A+L I EGC+  CTFC++P  
Sbjct: 120 MQH-------VHTHLPKPHDPFVDLVPAAGVKLTPRHY-AYLKISEGCNHRCTFCIIPSM 171

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTF 247
           RG  +SR ++ V+ EA  L  +GV E+ ++ Q+ +A           W GK +   K   
Sbjct: 172 RGDLVSRPVADVMLEAENLFKSGVKELLVISQDTSAYGVDVKYRTGFWNGKPI---KTRM 228

Query: 248 SDLLYSLSEIKG----LVRLRYTTSHPR------DMSDCLIKAHGDLDVLMPYLHLPVQS 297
           +DL+ +L E+       VRL Y   +P        M++   K H     ++PYL +P Q 
Sbjct: 229 TDLVGALGELAAQYGAWVRLHYVYPYPSVDEVIPMMAEGPYKGH-----VLPYLDVPFQH 283

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
               +LK M R   A +  + + + R + PD+ I S FI GFPGET++ F+  +D + + 
Sbjct: 284 AHPEVLKRMKRPANAEKVMERVKKWREMCPDLTIRSTFIAGFPGETEEQFQTLLDFIREA 343

Query: 358 GYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVL 417
              +   F YSP  G   + +   + + V+ ER     +   E         VG+ ++VL
Sbjct: 344 ELDRVGCFAYSPVEGATANELDGALPDEVREERRARFMEVAEEVSAKRIAKKVGKTLKVL 403

Query: 418 IEKHGKEK--GKLVGRSPWLQSVVL------NSKNHNIGDIIKVRITDVKISTLYGEL 467
           +++   +   G+    +P +  VV        SK + +GD + V+IT      L+GE+
Sbjct: 404 VDEINADGGIGRTAADAPEIDGVVYIAPAAKASKRYKVGDFVSVKITGADGHDLWGEV 461


>gi|313892874|ref|ZP_07826451.1| ribosomal protein S12 methylthiotransferase RimO [Veillonella sp.
           oral taxon 158 str. F0412]
 gi|313442227|gb|EFR60642.1| ribosomal protein S12 methylthiotransferase RimO [Veillonella sp.
           oral taxon 158 str. F0412]
          Length = 448

 Score =  165 bits (418), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 125/439 (28%), Positives = 218/439 (49%), Gaps = 27/439 (6%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA-AEKVYSFLGRIRN 89
           S GC  N+ D+  M  +    GY     + +ADLIV+NTC   EKA AE + + L   + 
Sbjct: 9   SLGCAKNLVDTEVMLGLLRDNGYTITEDLSEADLIVVNTCTFIEKAKAESINTILEVAQY 68

Query: 90  LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149
            ++ R K      ++VAGC++Q   +E+ +  P ++ ++G   + ++   ++    G R 
Sbjct: 69  KEDGRCKG-----LIVAGCLSQQYQDELFQEIPEIDALIGTGAWDQIMVAVDAIEHGNRS 123

Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209
              +       ER+  +          +A++ I EGC+  CTFC++P  RG   SR++  
Sbjct: 124 CIMENITNIYDERMPRI----QTTPRYSAYVKIAEGCNNGCTFCIIPKVRGAFRSRTIES 179

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSH 269
           +  E  +L  +GV E+ L+ Q+  ++ G  L+  K   + LL  L+ ++G+  +R    +
Sbjct: 180 IKAEVERLAASGVKEVVLIAQDTTSY-GIDLNDGKPLLTTLLRELTTVEGIEWIRMLYLY 238

Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329
           P   SD L+    +   L  Y+ +P+Q  ++ ILK MNRR    +  +++ +IR+    I
Sbjct: 239 PTFFSDELLDIIVNEPKLCKYVDIPLQHVNNDILKQMNRRDDRSDIERLLKKIRNAPTHI 298

Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAE 389
            + +  IVGFPGETD+ F    D V +I +     F YS   GTP     +QV E +K E
Sbjct: 299 TLRTSIIVGFPGETDEQFEELCDFVKEIKFDNMGVFTYSQEEGTPAGAREDQVPEEIKEE 358

Query: 390 R---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-------EKGKLVGRSPWLQ-SV 438
           R   L+ +Q  + E+    N    G I   ++E+  +        KG+L  ++P +  ++
Sbjct: 359 RYHVLMSIQAAISEEN---NRDLEGTIDYAMVEEIEEGDNNTLLAKGRLKSQAPDVDGNM 415

Query: 439 VLNSKNHNI--GDIIKVRI 455
            +     +I  GDI+KV++
Sbjct: 416 YIEDCGEDIKPGDILKVQV 434


>gi|326386508|ref|ZP_08208131.1| hypothetical protein Y88_2403 [Novosphingobium nitrogenifigens DSM
           19370]
 gi|326209169|gb|EGD59963.1| hypothetical protein Y88_2403 [Novosphingobium nitrogenifigens DSM
           19370]
          Length = 469

 Score =  165 bits (418), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 136/463 (29%), Positives = 213/463 (46%), Gaps = 51/463 (11%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC   + DS R+     + GY+     D AD++++NTC   + A E+  + +G     
Sbjct: 25  SLGCPKALVDSERILTRLRADGYQMSADYDGADVVLVNTCGFLDSAKEESLAAIGEA--- 81

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               I E G   V+V GC+   E E I  R P V  V G   Y  + + +  A       
Sbjct: 82  ----IAENGR--VIVTGCMGN-EAELIRARFPDVLAVTGAHQYEDVVDAVHAAAPPGLGP 134

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
             D   +     + +    Y+       +L I EGC+  CTFC++P  RG   SR +  V
Sbjct: 135 YVDLIPQSAPGDVKLTPRHYS-------YLKISEGCNHACTFCIIPQLRGKLASRRIDAV 187

Query: 211 VDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYSLSEIKG 259
           + EA KL+  G  E+ ++ Q+ +A           W+G  +       +  L  L    G
Sbjct: 188 LREAEKLVAAGTRELLVISQDTSAYGVDVGHEERLWKGHPVRTHMTDLARELGGLRTPDG 247

Query: 260 ---LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
               VRL Y   +P   +   + A G   +L PYL +P Q  S  +L++M R   A E +
Sbjct: 248 QVPWVRLHYVYPYPHVEAVIPLMAEG---LLTPYLDIPFQHASPSVLRAMKR--PANEAK 302

Query: 317 QIIDRIRSVR---PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
            +++R+RS R   PD+AI S F+VGFPGET+DDFR  +D +++    +  +F++ P  G 
Sbjct: 303 -VLERLRSWREICPDLAIRSSFVVGFPGETEDDFRYLLDWLEEAQLDRVGAFRFEPVAGA 361

Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK--EKGKL--V 429
             +++   V E VK ER   L +K      +  +A VG+ + V+I++ G+  E+G +   
Sbjct: 362 VANDLPGAVPEEVKEERYARLMEKTEAISRARLEAKVGRTLRVIIDEVGEPDEEGDIGAT 421

Query: 430 GRS----PWLQSVVL---NSKNHNIGDIIKVRITDVKISTLYG 465
           GRS    P +   V           GD + V + D     LYG
Sbjct: 422 GRSQADAPEIDGAVYLRDVPATLAPGDFVDVVVEDADAHDLYG 464


>gi|264677765|ref|YP_003277671.1| MiaB-like tRNA modifying enzyme YliG [Comamonas testosteroni CNB-2]
 gi|262208277|gb|ACY32375.1| MiaB-like tRNA modifying enzyme YliG [Comamonas testosteroni CNB-2]
          Length = 468

 Score =  165 bits (418), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 137/486 (28%), Positives = 216/486 (44%), Gaps = 71/486 (14%)

Query: 20  QCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEK 79
           Q   P+  FV S GC   + DS  +     ++GY+   + + ADL+++NTC   + A ++
Sbjct: 11  QTATPKVGFV-SLGCPKALTDSELILTQLSAEGYQTSKTFEGADLVIVNTCGFIDDAVKE 69

Query: 80  VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEE-----ILRRSPIVNVVVGPQTYY 134
               +G                 V+V GC+    G+E     +    P V  V GP    
Sbjct: 70  SLDTIGEALAANGK---------VIVTGCLGAKAGKEGGSTMVAEVHPSVLAVTGPHAT- 119

Query: 135 RLPELLERARFGKRVVDTDYS----VEDKFERL---SIVDGGYNRKRGVTAFLTIQEGCD 187
                       + V+D  ++      D F  L   S  D G        A+L I EGC+
Sbjct: 120 ------------QEVMDAVHTHLPKPHDPFVDLVPGSFGDAGIKLTPKHYAYLKISEGCN 167

Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WR 236
             CTFC++P  RG  +SR +  V+ EA+ L + GV E+ ++ Q+ +A           W 
Sbjct: 168 HRCTFCIIPSMRGDLVSRPIGDVLKEAKALFEGGVKELLVISQDTSAYGVDVKYRTGFWD 227

Query: 237 GKGLDGEKCTFSDLLYSLSEIKG-LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPV 295
           GK +       +D L  L++  G  VRL Y   +P   +   + A G +   +PYL +P+
Sbjct: 228 GKPVKTRMLELADELGKLAQQHGAWVRLHYVYPYPTVDAVLPLMAEGKI---LPYLDVPL 284

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVR---PDIAISSDFIVGFPGETDDDFRATMD 352
           Q     +LK M R  +     + +DRIR  R   P++ I S FI GFPGET+++F   +D
Sbjct: 285 QHSHPDVLKRMKRPASG---EKNLDRIREWRKICPELVIRSTFIAGFPGETEEEFEHLLD 341

Query: 353 LVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQ 412
            + +    +A  F YSP  G   + +   + E V+  R     +   E         VGQ
Sbjct: 342 FIREAEIDRAGCFAYSPVEGATANELPGMLPEEVREARRARFMEVAEEVSTKRLQRRVGQ 401

Query: 413 IIEVLIEKH---GKEKGKLVGRS----PWLQSVVL------NSKNHNIGDIIKVRITDVK 459
           +++VL++K    GK+ G  VGR+    P +  VV        SK + +G++I VRI   +
Sbjct: 402 VMKVLVDKAVSLGKKGG--VGRTYADAPEIDGVVHIQPPEKASKTYKVGELISVRIVGTQ 459

Query: 460 ISTLYG 465
              L G
Sbjct: 460 GHDLVG 465


>gi|226939871|ref|YP_002794944.1| oxidoreductase [Laribacter hongkongensis HLHK9]
 gi|226714797|gb|ACO73935.1| Probable oxidoreductase [Laribacter hongkongensis HLHK9]
          Length = 473

 Score =  165 bits (418), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 136/465 (29%), Positives = 213/465 (45%), Gaps = 57/465 (12%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R  V S GC     D+ ++     ++GYE  +S D+ADL+V+NTC   + A  +    +G
Sbjct: 11  RIGVVSLGCPKASVDTEQILTRLRAEGYELSSSYDNADLVVVNTCGFIDDAVAESLDAIG 70

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRR-SPIVNVVVGPQTYYRLPELLER-- 142
                    +KE G   V+V GC+   EG  ++R   P V  V G    +   E+L    
Sbjct: 71  EA-------LKENGK--VIVTGCLGAREGGNMVRDVHPSVLAVTG---AHATDEVLAHVH 118

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           A   K          D F  + +V G G        A+L I EGC+  CTFC++P  RG 
Sbjct: 119 AHLPKP--------HDPF--VDLVPGTGVRLTPKHYAYLKISEGCNHRCTFCIIPQLRGD 168

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDL 250
            +SR +  V+ EA  L   GV E+ ++ Q+ +A           W+G+ +   +    +L
Sbjct: 169 LVSRPVHDVLQEAENLAKGGVRELLVVSQDTSAYGVDLKYRTGFWQGRPI---RTRLLEL 225

Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
              L ++    RL Y   +P       + A G   +++PYL +P Q  S ++LK+M R  
Sbjct: 226 SRELGQMGMWTRLHYVYPYPSVDEIIPLMAEG---LVLPYLDIPFQHASQKVLKAMQRPA 282

Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370
            +      I + R + PD+A+ S FIVGFPGET+DDF+  +  +++    +   F YS  
Sbjct: 283 NSENVLARIKKWRDICPDLALRSTFIVGFPGETEDDFQELLGFLEEAQLDRVGCFTYSNV 342

Query: 371 LGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFN----DACVGQIIEVLIEKHGKEKG 426
            G P   M  Q+ E +K ER    Q +  E Q   +     A VG+ ++V++++   E  
Sbjct: 343 DGAPAKAMDGQIPEEIKQER----QARFMEVQARISAARLAAKVGRTLDVIVDEVDSEAD 398

Query: 427 KLVGRS----PWLQSVVL--NSKNHNIGDIIKVRITDVKISTLYG 465
            L  RS    P +   V      N   GDI+ V++ D     L+ 
Sbjct: 399 GLACRSRYDAPEIDGNVYIDGVGNARPGDILTVKVVDADEHDLWA 443


>gi|86359534|ref|YP_471426.1| hypothetical protein RHE_CH03954 [Rhizobium etli CFN 42]
 gi|86283636|gb|ABC92699.1| hypothetical conserved protein [Rhizobium etli CFN 42]
          Length = 423

 Score =  165 bits (418), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 118/400 (29%), Positives = 188/400 (47%), Gaps = 30/400 (7%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V ++GC++N Y+S  M+      G          + +++NTC +  +A  +         
Sbjct: 6   VITFGCRLNTYESEVMKAQAEKAGLN--------NAVLVNTCAVTGEAVRQARQ------ 51

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ------TYYRLPELLER 142
                  ++     ++V GC AQ E E     +  V+ V+G +      +Y  LP+    
Sbjct: 52  -AIRRARRDNPHARIIVTGCAAQTEKETFAAMAE-VDAVLGNEEKLSSASYRSLPDFGVS 109

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           A    RV D         + +  +DG       V AF+ +Q GCD  CTFC++PY RG  
Sbjct: 110 AEEKLRVNDIMSVKTTAPQMIRHIDGH------VRAFIQVQSGCDHRCTFCIIPYGRGNS 163

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            S  +  VVD+AR+L D+G  EI L G +  ++ G  L G           L +I  + R
Sbjct: 164 RSVPMGAVVDQARRLADSGYREIVLTGVDATSY-GSDLPGTPTLGLLAKTLLKQIPDIRR 222

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LR ++    +    L+    +    MP+LHL +Q G D ILK M RRH+  +  + I+ +
Sbjct: 223 LRLSSIDSIEADAHLMDLIAEEPRFMPHLHLSLQHGDDMILKRMKRRHSRADALRFIEDV 282

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R +RP+++  +D I GFP ET++ F   + L ++ G A    F YSPR GTP + M  Q+
Sbjct: 283 RRLRPEMSFGADMIAGFPTETEEMFANAVRLAEEAGIAHLHVFPYSPRPGTPAARM-PQL 341

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422
           D ++  +R   L+        S  D  VG    +L+E +G
Sbjct: 342 DRSLVKDRAARLRDTGHRLHQSHLDGMVGTRQWLLVENNG 381


>gi|293977855|ref|YP_003543285.1| MiaB family RNA modification protein [Candidatus Sulcia muelleri
           DMIN]
 gi|292667786|gb|ADE35421.1| RNA modification enzyme, MiaB family [Candidatus Sulcia muelleri
           DMIN]
          Length = 429

 Score =  165 bits (418), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 108/359 (30%), Positives = 183/359 (50%), Gaps = 19/359 (5%)

Query: 33  GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92
           GC++N  ++  + + F  +GYE V  +  ADL ++NTC +  K AEK    L RI     
Sbjct: 11  GCKLNFAETDTIINKFLKKGYEYVKFISYADLYIINTCSV-TKNAEKELKKLVRIA---- 65

Query: 93  SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDT 152
             I    +  +V  GC +Q   +EI   + I ++++G +  + +   L++    K +   
Sbjct: 66  --INNNVNAFIVAIGCYSQVNPKEISLINGI-DLIIGSKEKFNIINHLKKIYKNKFI--- 119

Query: 153 DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVD 212
             S++DK    +I    Y+R     ++L IQ+GCD  C++C +P  RG  IS ++  ++ 
Sbjct: 120 --SLKDK----NIYIPSYSRLNRTRSYLKIQDGCDYKCSYCTIPKARGFSISDNIKNIIF 173

Query: 213 EARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV-RLRYTTSHPR 271
            A+ LI  G+ EI L G N+  + GK    E     +   +  +IK  + R+R ++  P 
Sbjct: 174 YAKNLIKQGIKEIVLTGVNIGDY-GKHNLLELIQAMESSLNEDDIKNFIKRIRISSIEPN 232

Query: 272 DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAI 331
            +SD +I       + + + H+P+QSGSD IL  M RR++   Y + I +I ++ P   I
Sbjct: 233 LLSDDIINFIYKSKIFVNHFHIPLQSGSDEILNQMKRRYSKNLYLERIKKILNIMPFACI 292

Query: 332 SSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER 390
            SD IVGFPGE + +F  T  L+ +I  +    F YS R+ T    M   + + ++ +R
Sbjct: 293 GSDVIVGFPGEKEKNFIETYSLLSEINISYLHVFSYSERINTKAFIMNNSITKKIRYKR 351


>gi|218264310|ref|ZP_03478167.1| hypothetical protein PRABACTJOHN_03858 [Parabacteroides johnsonii
           DSM 18315]
 gi|218222111|gb|EEC94761.1| hypothetical protein PRABACTJOHN_03858 [Parabacteroides johnsonii
           DSM 18315]
          Length = 440

 Score =  165 bits (418), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 125/428 (29%), Positives = 203/428 (47%), Gaps = 26/428 (6%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N  ++  +  +   QG  +    + AD+ V+NTC + E A +K    + RI   
Sbjct: 16  TLGCKLNFAETSTIGKVLAEQGVRKARPSEKADICVVNTCSVTELADKKCRQAIRRIG-- 73

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL--LERARFGKR 148
                K+     +VV GC AQ + EE+     +  V+   Q    L  L  L++   G  
Sbjct: 74  -----KQHPGAFIVVIGCYAQLKPEEVSHIEGVDLVLGAEQKLDILMYLDDLKKKEEGGA 128

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           V+ +       F      D   +R R    FL +Q+GCD FC++C +P+ RG   + +++
Sbjct: 129 VIASQTKDIRSFSPSCSAD---DRTR---HFLKVQDGCDYFCSYCTIPFARGRSRNGTIA 182

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
            +V +A ++  +G  EI L G N+  + GK   GE  TF DL+ +L E++G+VR R ++ 
Sbjct: 183 SMVKQAEEVAASGGKEIVLTGVNIGDF-GKST-GE--TFIDLIRALDEVEGIVRYRISSI 238

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
            P  ++D  I          P+ H+P+QSGSD +LK M RR+    +R  I++I+ V P 
Sbjct: 239 EPNLITDEAIDFVAHSKHFAPHFHIPLQSGSDDVLKLMRRRYDTTLFRHKIEKIKEVMPH 298

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
             I  D IVG  GETD  F      ++ +  +Q   F YS R GT    +   VD   K 
Sbjct: 299 AFIGVDVIVGTRGETDTYFEDARTFIESLDISQLHVFSYSERPGTQALKIDYVVDPKTKH 358

Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-------HGKEKGKLVGRSPWLQSVVLN 441
            R   L      +  +F +  +G+   VL E+       HG  +  +    P+  S+V  
Sbjct: 359 ARSQQLLDISDRKLHTFYETHIGKQANVLFEQTRKGGMMHGFTENYIKVEIPYDSSLVNE 418

Query: 442 SKNHNIGD 449
           ++   +GD
Sbjct: 419 TRQVTLGD 426


>gi|260655525|ref|ZP_05861013.1| tRNA-I(6)A37 modification enzyme MiaB [Jonquetella anthropi E3_33
           E1]
 gi|260629973|gb|EEX48167.1| tRNA-I(6)A37 modification enzyme MiaB [Jonquetella anthropi E3_33
           E1]
          Length = 453

 Score =  165 bits (418), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 117/397 (29%), Positives = 197/397 (49%), Gaps = 51/397 (12%)

Query: 2   GLFIKLIGVAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDD 61
           GLF+ L G A                 ++  GC++N  ++  +   F S G   V S   
Sbjct: 4   GLFVSLAGTA---------------VRIEFLGCRVNAAEAEALASAFLSAGAS-VASDGP 47

Query: 62  ADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRS 121
            D+ ++ TC I   A  K    +GR+R  +  R       L+V +GC AQ   +E L + 
Sbjct: 48  FDVGIVVTCSITAMADRKSRQLIGRLRR-RCPRA------LLVASGCWAQG-ADEALAKK 99

Query: 122 PIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKF--------ERLSIVDGGYNRK 173
             ++++VG      +  L+ER    +    + Y++            ER S+    ++R 
Sbjct: 100 LGIDLLVGNGHKGEILALVERELSFRTSESSFYALRSPLAGVWDELDERTSVA---HSR- 155

Query: 174 RGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVN 233
               AF+ +Q+GCD  C++C+VP  RG  +SR L + V EAR+L++ G  E+ L G ++ 
Sbjct: 156 ----AFIKVQDGCDCRCSYCIVPSLRGPSVSRPLERTVAEARRLVEAGRTELVLTGVHLG 211

Query: 234 AW---RGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY 290
            W    G+GL       +DL+ ++  + GL RLR  +  P  + +  I A   L V  P+
Sbjct: 212 QWGKESGRGL-------ADLIEAVGNVPGLKRLRLGSLEPFGIDERDIDAMASLTVFAPH 264

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD-IAISSDFIVGFPGETDDDFRA 349
           LHLP+QSG D +L+ M R  T+ ++ +++ ++R    D + +S+D +V FPGETD+ F  
Sbjct: 265 LHLPLQSGDDGVLRRMRRPGTSGQFLELVKKLRRALGDGLHVSTDVMVAFPGETDEAFAR 324

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           T++++ +    +   F +S R GTP +   +QVD   
Sbjct: 325 TLEVLQEARIGRVHGFIFSIRPGTPAARFPDQVDRQT 361


>gi|268609957|ref|ZP_06143684.1| MiaB-like tRNA modifying enzyme YliG [Ruminococcus flavefaciens
           FD-1]
          Length = 443

 Score =  165 bits (418), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 126/451 (27%), Positives = 203/451 (45%), Gaps = 31/451 (6%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ DS RM     S GY+ V     AD+ V+NTC   + A E+    +     L
Sbjct: 9   SLGCSKNLVDSERMLYKLKSHGYQLVTEPGLADVAVVNTCGFIKSAKEEAIETI-----L 63

Query: 91  KNSRIKEGGDLL-VVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149
           +  ++KE G L  +++ GC+ +   EE   + P  + V+G      + ++L+     +R 
Sbjct: 64  ELGKLKEEGTLKKIIITGCLVERYKEEAAEQFPEADAVIGIGNTKDIVDVLDHVLANERY 123

Query: 150 V------DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           V      D + S E     L               +L + EGC   CT+C +P  RG   
Sbjct: 124 VCFAPKLDAELSGERIISTLPFF-----------TYLKVAEGCSNCCTYCAIPLIRGKFR 172

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           S  +  V+ EAR L +NGV E+ ++ Q+  A  GK L GE    ++LL  L  I GL  +
Sbjct: 173 SVPMEDVLKEARFLAENGVTELVVIAQD-TALYGKDLYGEP-KLAELLTELCRIDGLKWI 230

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R    +P  ++D L+      D ++ Y+ +P+Q  +  IL  MNR     +   +   IR
Sbjct: 231 RTLYCYPERITDELLDVIAREDKIVKYMEIPIQHCNGDILSRMNRWGDTEKLEALFRHIR 290

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              P + + +  I GFPGET++ F    + V ++ + +   F YS   GT  +   +Q+D
Sbjct: 291 EKVPGVILRTTLITGFPGETEEQFNELAEFVKRVRFDRLGCFPYSREEGTKAAEFPDQID 350

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQ-----SV 438
           E   A R   + ++        N+  +G  +E ++E   K      GR+P         V
Sbjct: 351 EETAAHRADIIMEQQMLISCENNEKLMGCELEAVVEGFDKFGECYFGRTPLDAPDIDGKV 410

Query: 439 VLNSKNH-NIGDIIKVRITDVKISTLYGELV 468
              S +   IG  + +RITD     L GE++
Sbjct: 411 FFTSDDPLEIGQYVTIRITDTLDYDLIGEVI 441


>gi|291190604|ref|NP_001167148.1| CDK5 regulatory subunit-associated protein 1-like 1 [Salmo salar]
 gi|223648364|gb|ACN10940.1| CDK5 regulatory subunit-associated protein 1-like 1 [Salmo salar]
          Length = 562

 Score =  165 bits (418), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 134/459 (29%), Positives = 222/459 (48%), Gaps = 43/459 (9%)

Query: 22  IVP--QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEK 79
           ++P  Q+ +++++GC  N  D   M     + GY+      +ADL +LN+C ++  A + 
Sbjct: 54  VIPGMQKIWMRTWGCSHNNSDGEYMAGQLAASGYKMTEDPAEADLWLLNSCTVKNPAEDH 113

Query: 80  VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGE-EILRRSPIVNVVVGPQTYYRLPE 138
              F   I+  +        D  VVVAGCV QA+   + L+   I+ V    Q   R+ E
Sbjct: 114 ---FRNSIKKAQEQ------DKKVVVAGCVPQAQPRMDYLKGLSIIGV----QQIDRVVE 160

Query: 139 LLERARFGKRVVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
           +++ A  G  V       +D  +RL  + +D    RK  +   ++I  GC   CT+C   
Sbjct: 161 VVDEAVKGHSVRLLGQK-KDNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTK 219

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-S 255
           + RG   S  + ++V+ AR+    GVCEI L  ++  A+ GK +  +  T   LL+ L  
Sbjct: 220 HARGDLASYPVEELVERARQSFQEGVCEIWLTSEDTGAY-GKDIGTDLPT---LLWRLVE 275

Query: 256 EIK-------GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
           EI        G+    Y   H  +MS  L         +  +LH+PVQS SD +L  M R
Sbjct: 276 EIPEGAMLRLGMTNPPYILEHLEEMSKILNHPR-----VYAFLHVPVQSASDSVLMDMKR 330

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
            + A ++R++ D ++   P I I++D I GFPGETD DF+ T DLV +  +   F  ++ 
Sbjct: 331 EYCADDFRRVADFLKDKVPGITIATDIICGFPGETDADFQETCDLVKEYRFPSLFINQFY 390

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFND--ACVGQIIEVLIEKHGKEKG 426
           PR GTP + M +QV   +K +R     K+L     S+N     +G+  +VL+ +   +  
Sbjct: 391 PRPGTPAAKM-DQVPAQLKKQRT----KELSALFHSYNPYHHKIGETQQVLVTEESFDAQ 445

Query: 427 KLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYG 465
             V  + + + V++  ++   G +I+V I +     L G
Sbjct: 446 YYVAHNKYYEQVLVPKRSEFKGKMIEVEIFEAGKHFLKG 484


>gi|50084549|ref|YP_046059.1| ribosomal protein S12 methylthiotransferase [Acinetobacter sp.
           ADP1]
 gi|81393301|sp|Q6FCH4|RIMO_ACIAD RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|49530525|emb|CAG68237.1| conserved hypothetical protein [Acinetobacter sp. ADP1]
          Length = 447

 Score =  165 bits (418), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 136/468 (29%), Positives = 220/468 (47%), Gaps = 52/468 (11%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  FV S GC   + DS R+     ++GY+  +  D ADL+V+NTC   E A ++    
Sbjct: 4   PKVGFV-SLGCPKALVDSERILTQLRTEGYQVASDYDGADLVVVNTCGFIESAVQESLDA 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-ER 142
           +G   + +N R        V+V GC+ + E ++I +  P V  V G   Y  + E + E 
Sbjct: 63  IGEAMS-ENGR--------VIVTGCLGKDE-DKIRQMHPNVLKVTGAAAYQDVMEAVHEY 112

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
                R         + F  L + + G        A+L I EGC+  CTFC++P  RG  
Sbjct: 113 VPAPPR--------HNPFVDL-VPEQGIRLTPKHYAYLKISEGCNHRCTFCIIPSMRGDL 163

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLL 251
           +SR +  V++EA  L   GV E+ ++ Q+ +A           W G+ +   K  F D+ 
Sbjct: 164 VSRPVGSVLEEAAALKRAGVKEVLVISQDTSAYGVDTKYKLDFWNGQPV---KTKFYDMC 220

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
            +L ++   VRL Y   +P   +   + A G    ++PYL +P Q  S RILK M R   
Sbjct: 221 EALGQLGIWVRLHYVYPYPHVDAVIDLMAQGK---ILPYLDIPFQHASPRILKLMKRPAH 277

Query: 312 AYEYRQIIDRIRSVR---PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
           +      +DRI+  R   P++ I S F+VGFPGET++DF+  ++ + +    +   F YS
Sbjct: 278 S---ENTLDRIKVWREKCPNLVIRSTFVVGFPGETEEDFQILLEWLKEAQLDRVGCFTYS 334

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL 428
           P  G   +++ + V E VK ER     +  +E   +     +GQ + VL++    E    
Sbjct: 335 PVEGATANDLPDHVSEEVKQERYERFMQVQQEISAARLQKRIGQTMTVLVDSLEDEYPVA 394

Query: 429 VGRS----PWLQSVV----LNSKNHNIGDIIKVRITDVKISTLYGELV 468
           V RS    P +   V    ++      G +++V ITD     L+ +L+
Sbjct: 395 VARSYADAPEIDGNVFVEDIDKSLVQPGQLLEVEITDADEYDLFAKLI 442


>gi|150398286|ref|YP_001328753.1| MiaB-like tRNA modifying enzyme [Sinorhizobium medicae WSM419]
 gi|150029801|gb|ABR61918.1| MiaB-like tRNA modifying enzyme [Sinorhizobium medicae WSM419]
          Length = 424

 Score =  165 bits (417), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 121/401 (30%), Positives = 189/401 (47%), Gaps = 32/401 (7%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V ++GC++N Y+S  M       G          + +++NTC +  +A  +         
Sbjct: 6   VITFGCRLNTYESEVMRAEAEKAGLN--------NAVLVNTCAVTAEAVRQARQ------ 51

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ------TYYRLPELLER 142
                  +E     ++V GC AQ E E     +  V+ V+G +      +Y  LP+    
Sbjct: 52  -AIRRARRENPHARIIVTGCAAQTEKETFAEMAE-VDAVLGNEEKLTSASYRSLPDFGVS 109

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           A    RV D         + +  +DG       V AF+ +Q GCD  CTFC++PY RG  
Sbjct: 110 AEEKLRVNDIMSVRATAPQMVKHIDGH------VRAFIQVQNGCDHRCTFCIIPYGRGNS 163

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKGLV 261
            S  +  VVD+AR+L++ G  EI L G +  ++ G  L G   T   L  +L  ++  ++
Sbjct: 164 RSVPMGAVVDQARRLVEGGYREIVLTGVDATSY-GADLPGTP-TLGLLAKTLLKQVPEIL 221

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           RLR ++    +    L+    +    MP+LHL +Q G D +LK M RRH++ + R     
Sbjct: 222 RLRLSSIDSIEADVHLLDLIAEEPRFMPHLHLSLQHGDDLMLKRMKRRHSSADARAFCAE 281

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +  +RP+I+ S+D I GFP ET+  F+  + L +  G A    F YSPR GTP + M  Q
Sbjct: 282 VLRLRPEISFSADMIAGFPTETEAMFQNAVRLAEDCGLAHLHVFPYSPRPGTPAARM-PQ 340

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422
           +D  +  ER   L+ K  E      +  VG    VL+E +G
Sbjct: 341 LDRVLVKERAARLRAKGAELHTVHLERMVGSRQMVLVEMNG 381


>gi|312143618|ref|YP_003995064.1| MiaB-like tRNA modifying enzyme YliG [Halanaerobium sp.
           'sapolanicus']
 gi|311904269|gb|ADQ14710.1| MiaB-like tRNA modifying enzyme YliG [Halanaerobium sp.
           'sapolanicus']
          Length = 445

 Score =  165 bits (417), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 118/454 (25%), Positives = 225/454 (49%), Gaps = 29/454 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQG-YERVNSMDDADLIVLNTC-HIREKAAEKVYSF 83
           ++ + + GC  N  DS  M+    S   +E +N+ + A++I++NTC  I++   E + + 
Sbjct: 3   KYSIMTLGCPKNEVDSQHMQGFLNSDSEFEYINNFEKAEVIIINTCGFIQDAKEESIDTI 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           L  +   K    +      VVV GC+ Q   EE+      ++ V+G   + ++ E+++ +
Sbjct: 63  LTALEYKKEHNCRS-----VVVTGCLTQRYSEELQDEIAEIDAVLGTSNFDKITEVIKES 117

Query: 144 RFGKRV-----VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
             GK+         DYS     E              V A+L I EGC+  C++C +P  
Sbjct: 118 LAGKKAGGIEEAGFDYSASLPREL----------DNNVFAYLKIAEGCNNNCSYCSIPQI 167

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258
           RG   SR+++ ++ EA+K+ ++G+ E+ L+ Q+   + G  + G +   + LL  L+E++
Sbjct: 168 RGGIKSRTIADIIREAKKIAESGIKELILIAQDTTQY-GIDIYG-RSALAPLLRKLTEVE 225

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           G+  +R   S+P  +++ +I+   + D +  YL LP+Q  + +I K MNR+    +   I
Sbjct: 226 GIEWIRILYSYPEFITEEMIEVIAEEDKICNYLDLPIQHSAIKIRKLMNRKGDREDIANI 285

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           I+ IR+  PD+ + +  I GFPGE+  DF    + + +  + +   F++S    T   N+
Sbjct: 286 INMIRNKIPDVKLRTSLISGFPGESQADFEDLKNFIKEFKFDRLGVFEFSLEEDTAAYNL 345

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR--SPWLQ 436
             ++   VK +R   L +  +E  +  N   + Q +EV+IE+   +      R  SP + 
Sbjct: 346 PNRISPEVKKQRKEELLEIQQEISLEKNKGLLNQELEVIIEEKTDDHYLARSRFDSPEID 405

Query: 437 S---VVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
           +   + + + +  IG+I +  IT+     L GE+
Sbjct: 406 NQIYIPVANNDLKIGNIYRTFITEAYHYELKGEI 439


>gi|319953952|ref|YP_004165219.1| ssu ribosomal protein s12p methylthiotransferase [Cellulophaga
           algicola DSM 14237]
 gi|319422612|gb|ADV49721.1| SSU ribosomal protein S12P methylthiotransferase [Cellulophaga
           algicola DSM 14237]
          Length = 433

 Score =  165 bits (417), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 138/454 (30%), Positives = 225/454 (49%), Gaps = 47/454 (10%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC-HIREKAAEKVYSFLGRI 87
           V + GC  NVYDS  +     +   + V+   + +++V+NTC  I+    E V + L  +
Sbjct: 13  VVTLGCSKNVYDSEILMGQLKANKKDVVHE-GEGNIVVINTCGFIKNAKEESVNTILEFV 71

Query: 88  RNLKNSRIKEGGDL-LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           +       KE G +  V V GC+++    ++ +  P V+   G      LP LL      
Sbjct: 72  QK------KEAGIVDKVFVTGCLSERYKPDLQKEIPNVDEYFGTT---ELPGLL------ 116

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
            + +  DY  E   ERL+     Y       A+L I EGCD+ C+FC +P  RG   S  
Sbjct: 117 -KALGADYKHELIGERLTTTPKNY-------AYLKIAEGCDRPCSFCAIPIMRGKHKSTP 168

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGL--VRL 263
           +  +V EA KL  NGV E+ L+ Q++  +   GLD  +K   ++LL +L ++ G+  +RL
Sbjct: 169 IENLVIEAEKLAANGVKELILIAQDLTYY---GLDIYKKRNLAELLEALVKVDGIEWIRL 225

Query: 264 RYT--TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
            Y   T  P D+   + K       +  YL +P+Q  SD ILKSM R  T  +  +++  
Sbjct: 226 HYAFPTGFPMDVLALMKKEPK----ICNYLDIPLQHISDAILKSMRRGTTKEKTTKLLYD 281

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
            R++ P++AI +  IVG+PGET++DF+     V+++ + +   F YS    T    +++ 
Sbjct: 282 FRALVPEMAIRTTLIVGYPGETEEDFQTLKAWVEEMRFERLGCFTYSHEENTHAYTLVDD 341

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQS 437
           V E+VK ER   + +   +     N   VGQ +  ++++  KE    +GR    SP + +
Sbjct: 342 VPEDVKQERASQIMEIQSQISWELNQEKVGQTLRCIVDR--KEGPHFIGRTEFDSPDVDN 399

Query: 438 VVL--NSKNH-NIGDIIKVRITDVKISTLYGELV 468
            VL   SK +  +GD + + IT+     LYGE V
Sbjct: 400 EVLIDASKFYLKVGDFVNINITEAADFDLYGEPV 433


>gi|303257047|ref|ZP_07343061.1| putative Fe-S oxidoreductase family 1 [Burkholderiales bacterium
           1_1_47]
 gi|330999926|ref|ZP_08323624.1| ribosomal protein S12 methylthiotransferase RimO [Parasutterella
           excrementihominis YIT 11859]
 gi|302860538|gb|EFL83615.1| putative Fe-S oxidoreductase family 1 [Burkholderiales bacterium
           1_1_47]
 gi|329573333|gb|EGG54945.1| ribosomal protein S12 methylthiotransferase RimO [Parasutterella
           excrementihominis YIT 11859]
          Length = 446

 Score =  165 bits (417), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 133/462 (28%), Positives = 214/462 (46%), Gaps = 40/462 (8%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P R    S GC   + DS R+     ++GY   ++  D+DL+++NTC   + A ++    
Sbjct: 5   PPRVGFVSLGCPKALVDSERIVTELRAEGYLISSTYKDSDLVIVNTCGFIDAAVQESLEA 64

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVA---QAEGEEILRRSPIVNVVVGPQTYYRLPELL 140
           +       +  + E G   V+V GC+      EG  +  R P +  V GP+   +  E+L
Sbjct: 65  I-------SEALSENGK--VIVTGCLGGKNTEEGNFVALRFPKLLGVTGPE---QTEEVL 112

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
                 + V D      + F  L +  GG        A+L I EGC+  CTFC++P  RG
Sbjct: 113 ------RLVHDNLPRPHEPFGDL-VPAGGVLLTPKHYAYLKIAEGCNHHCTFCIIPSLRG 165

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK--------GLDGEKCTFSDLLY 252
             +SR +  VV EA  L+ +GV E+ ++ Q+  A+           G    K     L  
Sbjct: 166 PLVSRPIGSVVREASNLVKSGVKELLVIAQDTAAYGQDVKYKLDFIGGRAVKTNIKVLFE 225

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
            L ++   VR  Y   +P    D ++    +  +L PYL +P Q    RILK+M R  + 
Sbjct: 226 ELGKLGVWVRPHYM--YPYASVDEIVPLMAEGKIL-PYLDVPFQHAHPRILKAMKRPGSE 282

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
           Y   + I+  R++ PDI I S FI GFPGET+++F+  +D + +    +   F YSP  G
Sbjct: 283 YNMER-INAWRAICPDITIRSTFITGFPGETEEEFQYLLDFLKEARLNRVGCFAYSPVEG 341

Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS 432
              +++   + E+V+ ER     +   E         VG+ I+VL+++   E G    RS
Sbjct: 342 AAANDLPGALPESVRVERRERFMEVQSEISKELLREKVGKTIKVLVDEAPDEDGIATARS 401

Query: 433 ----PWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468
               P +  +V    N N+  GD + V++TD     L+ E+V
Sbjct: 402 TADAPDIDGLVFIENNPNVKPGDFVDVKVTDSSDYDLFAEVV 443


>gi|78187264|ref|YP_375307.1| hypothetical protein Plut_1405 [Chlorobium luteolum DSM 273]
 gi|123730034|sp|Q3B317|RIMO_PELLD RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|78167166|gb|ABB24264.1| SSU ribosomal protein S12P methylthiotransferase [Chlorobium
           luteolum DSM 273]
          Length = 440

 Score =  165 bits (417), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 130/450 (28%), Positives = 222/450 (49%), Gaps = 39/450 (8%)

Query: 28  FVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRI 87
           F+ S GC  N  DS R++    + G       ++A++I++NTC   E A E+    +   
Sbjct: 11  FLLSLGCSKNTVDSERLQAQAEASGITFTQQAEEAEVILINTCGFIEDAKEESIMEILAA 70

Query: 88  RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER--ARF 145
            ++KN+    G    V V GC+ +    E+    P V+   G +    LP +L+   AR+
Sbjct: 71  VDMKNA----GTVRQVYVMGCLTELYRNELQEELPEVDRFFGTR---ELPAVLDALGARY 123

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            + + D            S++   +      +++L I EGC + C+FC +P  RG  +S+
Sbjct: 124 HQELYD----------HRSLLTPPH------SSYLKIAEGCSRACSFCSIPKIRGRYLSQ 167

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK-GLVRLR 264
            + Q++ EAR L +NGV E+ L+ Q++  + G  L G K   +DLL  LS+++   +RL 
Sbjct: 168 PMEQLLREARLLQENGVKELNLIAQDITVY-GVDLYG-KQMLNDLLMRLSDMEFRWIRLL 225

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           Y  ++P      +I   G+   +  YL LP+Q  SD IL+SMNR  T  +  ++I+ IR+
Sbjct: 226 Y--AYPVGFPLEVIDTIGNRSNICNYLDLPLQHCSDPILRSMNRGITKEQSLRLIEEIRN 283

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             PDI + +  I G+PGET  +F   ++    + + +   F Y     +P  ++++ V E
Sbjct: 284 RNPDIRLRTTMIAGYPGETRKEFEEMLEFAGSVRFDRLGCFPYRHEEHSPAYSLIDTVPE 343

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK--HGKEKGKLVGRSPWLQSVVLN- 441
             K ER+  L +   E     N+A VG ++ VL+++   G+E   L+GR+ +    V N 
Sbjct: 344 EEKQERVSELMELQEEIARKKNEAFVGSLMTVLVDRPEEGEEGLILIGRTEFDAPEVDNE 403

Query: 442 ------SKNHNIGDIIKVRITDVKISTLYG 465
                 S   + G  ++ RIT      L+G
Sbjct: 404 CLLESGSPEPSPGTFVQARITGSTAYELHG 433


>gi|51244669|ref|YP_064553.1| hypothetical protein DP0817 [Desulfotalea psychrophila LSv54]
 gi|81642781|sp|Q6AQ27|RIMO_DESPS RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|50875706|emb|CAG35546.1| conserved hypothetical protein [Desulfotalea psychrophila LSv54]
          Length = 443

 Score =  165 bits (417), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 124/453 (27%), Positives = 224/453 (49%), Gaps = 24/453 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +F + S GC  N+ DS  +       G+E  +  D ADL+++NTC   + A E+    + 
Sbjct: 2   KFHLISLGCAKNLVDSEVVLGCLRDAGWEMTDEQD-ADLLLVNTCGFIQPAVEEAVEEIL 60

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            + ++K    ++     +VV GC+ Q   E++L   P V++ VG +    + E + +   
Sbjct: 61  ALVDIKADFPEKK----IVVLGCLVQRYKEQLLESLPEVDLFVGTEGVANIAEYVGKLIA 116

Query: 146 G----KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           G    K ++ T++ +  K  R               A++ I EGCD  C++C++P  RG 
Sbjct: 117 GEEQDKVIMPTEFLMTAKVPR-------QQSTPFFRAWVKITEGCDNRCSYCMIPSIRGP 169

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
             SRS++ V++E + ++ +GV EI+L+ Q++ A+ G  L G+      LL  L     + 
Sbjct: 170 LRSRSVADVLEEVQAMVASGVQEISLIAQDLTAY-GDDL-GDDVNLLVLLKELLAKTSVP 227

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
            +R    +P ++ D L++       ++ YL +P+Q  +DR+L  MNR +   +  + +D+
Sbjct: 228 WIRLLYLYPSELLDELLQLMAANPRIVKYLDIPIQHVNDRVLHLMNRPYGRADLEEFVDK 287

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
            R+  PDIA+ + F+VGFPGET++++    + +          F YS   G P  +  +Q
Sbjct: 288 ARAHMPDIALRTTFLVGFPGETEEEYAEIGEFLRVRKLDHVGVFPYSNEEGAPSEHFPDQ 347

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GRSPWLQS--- 437
           VD+ +K  R   L +  +E         VG + +VL+E   +E   L+ GR+ +  +   
Sbjct: 348 VDDEIKESRCARLLELQQELSTEIQKKYVGTVQKVLVEGVSEETDLLLEGRTQYQAADVD 407

Query: 438 --VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
             V +N      G+I+ + ITD +   L G +V
Sbjct: 408 GRVYINEGQVVAGEIVDILITDSQQYDLVGGVV 440


>gi|254252283|ref|ZP_04945601.1| 2-methylthioadenine synthetase [Burkholderia dolosa AUO158]
 gi|124894892|gb|EAY68772.1| 2-methylthioadenine synthetase [Burkholderia dolosa AUO158]
          Length = 453

 Score =  165 bits (417), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 133/477 (27%), Positives = 215/477 (45%), Gaps = 61/477 (12%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  FV S GC   + DS ++     ++GYE   + D ADL+V+NTC   ++A ++    
Sbjct: 5   PKVGFV-SLGCPKALVDSEQIITQLRAEGYEISGTYDGADLVVVNTCGFIDEAVQESLDA 63

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVA---QAEGEEILRR-SPIVNVVVGPQTYYRLPEL 139
           +G         + E G   V+V GC+     A G  ++    P V  V GP     + + 
Sbjct: 64  IGEA-------LTENGK--VIVTGCLGAKKSASGSGLIEEVHPKVLAVTGPHAVGEVMQA 114

Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           +  +   K          D F  L +   G        A+L I EGC+  CTFC++P  R
Sbjct: 115 V-HSHLPKP--------HDPFVDL-VPAAGIKLTPRHYAYLKISEGCNHRCTFCIIPSMR 164

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFS 248
           G  +SR +++V+ EA  L  +GV E+ ++ Q+ +A           W GK +   K   +
Sbjct: 165 GDLVSRPVAEVMLEAENLFKSGVKELLVISQDTSAYGVDVKYRTGFWNGKPI---KTRMT 221

Query: 249 DLLYSLSEIKG----LVRLRYTTSHPRD------MSDCLIKAHGDLDVLMPYLHLPVQSG 298
           DL+ +L E+       VRL Y   +P        M++   K H     ++PYL +P Q  
Sbjct: 222 DLVAALGELAAQYGAWVRLHYVYPYPSVDEVIPLMAEGPFKGH-----VLPYLDVPFQHA 276

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
              +LK M R   A +  + + + R + PD+ I S FI GFPGET+  F   +D + +  
Sbjct: 277 HPEVLKRMKRPANAEKVLERVQKWREICPDLTIRSTFIAGFPGETEAQFDTLLDFIREAE 336

Query: 359 YAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI 418
             +   F YSP  G   + +   + + V+  R     +   E         VG+ ++VLI
Sbjct: 337 LDRVGCFAYSPVEGATANELDGALPDEVREARRARFMEVAEEVSAKRIQRKVGKTLKVLI 396

Query: 419 EKHGKEK--GKLVGRSPWLQSVVL------NSKNHNIGDIIKVRITDVKISTLYGEL 467
           ++ G E   G+    +P +  VV        SK + +GD + V+IT      L+GE+
Sbjct: 397 DEVGDEGGIGRTAADAPEIDGVVYVEPAAKASKRYKVGDFVSVKITGADGHDLWGEV 453


>gi|332829284|gb|EGK01938.1| MiaB-like tRNA modifying enzyme [Dysgonomonas gadei ATCC BAA-286]
          Length = 436

 Score =  165 bits (417), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 125/432 (28%), Positives = 206/432 (47%), Gaps = 25/432 (5%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N  ++  +       G  R    + A++ V+NTC + E A +K    + ++   
Sbjct: 16  TLGCKLNFAETSAIGKQLSQVGVRRAREGEVAEICVINTCSVTEFADKKCRQAVRKL--- 72

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               IKE     V+V GC AQ + E+I     +  V+   Q    +  L E  +  K VV
Sbjct: 73  ----IKENPGAYVIVTGCYAQLKPEDIAGIEGVDIVLGSEQKLDVVAYLDELKKKDKGVV 128

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
            T  S  +K +         +R R    FL +Q+GCD FC+FC +P+ RG   + ++  +
Sbjct: 129 HT--SKTNKIKSFVPSCSQDDRTR---YFLKVQDGCDYFCSFCTIPFARGRSRNGTIESM 183

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270
           V +A+++   G  EI L G N+  + G+   GE  TF DL+ +L E+ G+ R R ++  P
Sbjct: 184 VKQAQEVAAKGGKEIVLTGVNIGDF-GR-TTGE--TFFDLIKALDEVDGIERYRISSIEP 239

Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330
             ++D +I          P+ H+P+QSGSD +LK M RR+    +R  +++I+++ PD  
Sbjct: 240 NLLTDEIIDFVSKSKRFAPHFHIPLQSGSDAVLKLMRRRYDTSLFRHKVEKIKAIMPDAF 299

Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER 390
           I  D IVG  GETD+ F  T   ++ + ++Q   F YS R  T    +  +VD   K  R
Sbjct: 300 IGVDVIVGTRGETDEYFEETKQFLEGLDFSQLHVFTYSERPNTQALKIEHEVDPKTKHAR 359

Query: 391 LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG--------RSPWLQSVVLNS 442
              L      +  +F  +  G   +VL E H +   ++ G         +P+  S     
Sbjct: 360 CKVLLDLSDNKLEAFYRSQQGTQRKVLFE-HAQHDDRMYGFTENYVKIETPYQASKANEI 418

Query: 443 KNHNIGDIIKVR 454
           K   +GD  KV+
Sbjct: 419 KIVTLGDFNKVK 430


>gi|189350582|ref|YP_001946210.1| ribosomal protein S12 methylthiotransferase [Burkholderia
           multivorans ATCC 17616]
 gi|238065380|sp|A9AH21|RIMO_BURM1 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|189334604|dbj|BAG43674.1| putative 2-methylthioadenine synthetase [Burkholderia multivorans
           ATCC 17616]
          Length = 453

 Score =  165 bits (417), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 133/477 (27%), Positives = 216/477 (45%), Gaps = 61/477 (12%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  FV S GC   + DS ++     ++GYE   + D ADL+V+NTC   ++A ++    
Sbjct: 5   PKVGFV-SLGCPKALVDSEQIITQLRAEGYEISGTYDGADLVVVNTCGFIDEAVQESLDA 63

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVA---QAEGEEILRR-SPIVNVVVGPQTYYRLPEL 139
           +G         + E G   V+V GC+     A G  ++    P V  V GP     + + 
Sbjct: 64  IGEA-------LTENGK--VIVTGCLGAKKSASGSGLIEEVHPKVLAVTGPHAVGEVMQA 114

Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           +  +   K          D F  L +   G        A+L I EGC+  CTFC++P  R
Sbjct: 115 V-HSHLPKP--------HDPFVDL-VPPAGIKLTPRHYAYLKISEGCNHRCTFCIIPSMR 164

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFS 248
           G  +SR +++V+ EA  L  +GV E+ ++ Q+ +A           W GK +   K   +
Sbjct: 165 GDLVSRPVAEVMLEAENLFKSGVKELLVISQDTSAYGVDVKYRTGFWNGKPI---KTRMT 221

Query: 249 DLLYSLSEIKG----LVRLRYTTSHPRD------MSDCLIKAHGDLDVLMPYLHLPVQSG 298
           DL+ +L E+       VRL Y   +P        M++   K H     ++PYL +P Q  
Sbjct: 222 DLVAALGELAAQYGAWVRLHYVYPYPSVDEVIPLMAEGPFKGH-----VLPYLDVPFQHA 276

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
              +LK M R   A +  + + + R + PD+ I S FI GFPGET+  F   +D + +  
Sbjct: 277 HPDVLKRMKRPANAEKVLERVQKWREICPDLTIRSTFIAGFPGETEAQFETLLDFIREAE 336

Query: 359 YAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI 418
             +   F YSP  G   + +   + ++V+ ER     +   E         VG+ ++VLI
Sbjct: 337 LDRVGCFAYSPVEGASANELDGALPDDVREERRARFMEVAEEVSARRIARKVGKTLKVLI 396

Query: 419 EKHGKEK--GKLVGRSPWLQSVVL------NSKNHNIGDIIKVRITDVKISTLYGEL 467
           ++   E   G+    +P +  VV        SK + +GD + V+IT      L+GE+
Sbjct: 397 DEVSDEGGIGRTAADAPEIDGVVYVEPATKASKRYKVGDFVSVKITGADGHDLWGEV 453


>gi|114331380|ref|YP_747602.1| MiaB-like tRNA modifying enzyme YliG [Nitrosomonas eutropha C91]
 gi|122313794|sp|Q0AG95|RIMO_NITEC RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|114308394|gb|ABI59637.1| SSU ribosomal protein S12P methylthiotransferase [Nitrosomonas
           eutropha C91]
          Length = 445

 Score =  165 bits (417), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 136/472 (28%), Positives = 218/472 (46%), Gaps = 68/472 (14%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           +P+  FV S GC     DS R+     ++GY    +  DADL+V+NTC   + A  +   
Sbjct: 12  IPRVGFV-SLGCPKATVDSERILTCLRAEGYLISPNYADADLVVVNTCGFIDSAVAESLE 70

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRS-PIVNVVVGPQT--------Y 133
            +G         + E G   V+V GC+   E  +++R++ P V  V GPQ         +
Sbjct: 71  TIGE-------ALTENGK--VIVTGCLGAKE--DVIRQAHPSVLAVTGPQATEEVMAAIH 119

Query: 134 YRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC 193
           + LP+                   D +  L +   G        A+L I EGC+  CTFC
Sbjct: 120 HHLPK-----------------PHDPYLDL-VPPQGIKLTPKHYAYLKISEGCNHHCTFC 161

Query: 194 VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDG 242
           ++P  RG  +SR +  V+ EA+ L++ GV E+ ++ Q+ +A           W+G+ +  
Sbjct: 162 IIPSMRGDLVSRPVGGVLQEAQSLVEAGVKELLIISQDTSAYGVDIKYRTGFWQGRPV-- 219

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
            +   ++L  +L E    VRL Y   +P       + A G L   +PYL +P Q  + RI
Sbjct: 220 -RTRITELANALGEFGIWVRLHYVYPYPHVDELIPLMAEGKL---LPYLDIPFQHANKRI 275

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           LK M R   +      I + R   PDIA+ S FIVGFPGET+ +F   +  +++    + 
Sbjct: 276 LKLMKRPANSENVLVRIQQWRKTCPDIALRSTFIVGFPGETEAEFEELLAFLEEAQLDRV 335

Query: 363 FSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQ--VSFNDACV--GQIIEVLI 418
            +F YSP  G   + + + V   ++ ERL    ++L +QQ  +S     V  GQ + VL+
Sbjct: 336 GAFTYSPVKGAAANVLPDHVPPEIQQERL----ERLMQQQEIISKQRLAVKKGQQLRVLV 391

Query: 419 EKHGKEK--GKLVGRSPWLQSVVL--NSKNHNIGDIIKVRITDVKISTLYGE 466
           +   +E    +    +P +  VV   ++     GD   VR+TD  I  L+ E
Sbjct: 392 DTVDEEGAIARSYADAPEIDGVVYINDASTLKPGDWADVRVTDTDIHDLWTE 443


>gi|327190190|gb|EGE57295.1| putative methylase protein (RNA modification enzyme), MiaB family
           [Rhizobium etli CNPAF512]
          Length = 599

 Score =  165 bits (417), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 120/401 (29%), Positives = 192/401 (47%), Gaps = 32/401 (7%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V ++GC++N Y+S  M+      G          + +++NTC +  +A  +         
Sbjct: 182 VITFGCRLNTYESEVMKAQAEKAGLN--------NAVLVNTCAVTGEAVRQARQA----- 228

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ------TYYRLPELLER 142
                  ++     ++V GC AQ E ++     P V+ V+G +      +Y  LP+    
Sbjct: 229 --IRRARRDNPHARIIVTGCAAQTE-KQTFAAMPEVDAVLGNEEKLSSASYRSLPDFGVS 285

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           A+   RV D         + +  +DG       V AF+ +Q GCD  CTFC++PY RG  
Sbjct: 286 AQEKLRVNDIMSVKATAPQMVRHIDGH------VRAFIQVQNGCDHRCTFCIIPYGRGNS 339

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKGLV 261
            S  +  VVD+AR+L D+G  EI L G +  ++ G  L G   T   L  +L  ++  + 
Sbjct: 340 RSVPMGAVVDQARRLADSGYREIVLTGVDATSY-GGDLPGAP-TLGLLAKTLLKQVPDIR 397

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           RLR ++    +    L+    +    MP+LHL +Q G D ILK M RRH   +  + I+ 
Sbjct: 398 RLRLSSIDSIEADAHLMDLIAEEPRFMPHLHLSLQHGDDMILKRMKRRHLRADALRFIED 457

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
            RS+RP+++  +D I GFP ET++ F   + L ++ G A    F YSPR GTP + M  Q
Sbjct: 458 ARSLRPEMSFGADMIAGFPTETEEMFDNAVRLAEEAGIAHLHVFPYSPRPGTPAARM-PQ 516

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422
           +D ++  +R   L+        S  D  VG    +L+E +G
Sbjct: 517 LDRSLVKDRAARLRATGHRLHQSHLDGMVGTRQWLLVENNG 557


>gi|269798261|ref|YP_003312161.1| MiaB-like tRNA modifying enzyme YliG [Veillonella parvula DSM 2008]
 gi|269094890|gb|ACZ24881.1| MiaB-like tRNA modifying enzyme YliG [Veillonella parvula DSM 2008]
          Length = 448

 Score =  165 bits (417), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 127/440 (28%), Positives = 219/440 (49%), Gaps = 29/440 (6%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA-AEKVYSFLGRIRN 89
           S GC  N+ D+  M  +    GY     + +ADLIV+NTC   EKA AE + + L     
Sbjct: 9   SLGCAKNLVDTEVMLGLLRDNGYSITEDLSEADLIVVNTCTFIEKAKAESINTIL----- 63

Query: 90  LKNSRIKEGGDLL-VVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
            + ++ KE G    ++VAGC++Q   +E+ +  P ++ ++G   + ++   ++    G R
Sbjct: 64  -EVAQYKEDGACKGLIVAGCLSQQYQDELFQEIPEIDALIGTGAWDQVMVAVDAIEHGNR 122

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
               +       ER+  +          +A++ I EGC+  CTFC++P  RG   SR++ 
Sbjct: 123 SCIMENITNIYDERMPRI----QTTPRYSAYVKIAEGCNNGCTFCIIPKVRGAFRSRTIE 178

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
            +  E  +L   GV E+ L+ Q+  ++ G  L+  K   + LL  L+ ++G+  +R    
Sbjct: 179 SIKAEVERLAATGVKEVVLIAQDTTSY-GIDLNNGKPLLTTLLKELTTVEGIEWIRMLYL 237

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
           +P   SD L+    +   L  Y+ +P+Q  ++ ILK MNRR    +  +++ +IR+    
Sbjct: 238 YPTFFSDELLDIIVNEPKLCKYVDIPLQHVNNDILKQMNRRDDRNDIERLLKKIRNAPTH 297

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           I + +  IVGFPGETD+ F    D V +I +     F YS   GTP     +Q+ E VK 
Sbjct: 298 ITLRTSIIVGFPGETDEQFEELCDFVKEIKFDNMGVFTYSQEAGTPAGAREDQIPEEVKE 357

Query: 389 ER---LLCLQKKLREQQVSFNDACVGQIIEVLIE--KHGKE-----KGKLVGRSPWLQ-S 437
           ER   L+ +Q  + E+    N    G I   ++E  + G+      KG+L  ++P +  +
Sbjct: 358 ERYHVLMSIQAAISEEN---NRDLEGTIDYAMVEEIEEGENNTLLAKGRLKSQAPDVDGN 414

Query: 438 VVLNSKNHNI--GDIIKVRI 455
           + +     +I  GDI+KV++
Sbjct: 415 MYIEDCGEDIQPGDILKVQV 434


>gi|300870181|ref|YP_003785052.1| MiaB-like tRNA modifying enzyme [Brachyspira pilosicoli 95/1000]
 gi|300687880|gb|ADK30551.1| MiaB-like tRNA modifying enzyme [Brachyspira pilosicoli 95/1000]
          Length = 415

 Score =  165 bits (417), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 107/394 (27%), Positives = 202/394 (51%), Gaps = 31/394 (7%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           + ++GC++N Y+S ++     + G   + ++ +AD I +NTC +   + +K+ S+L ++ 
Sbjct: 5   IHTFGCRLNQYESEKIAYELKNMG-ANITTLKEADAIAINTCTVTNDSDKKLVSYLEKLE 63

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
           +++  +I         + GC    +G     +    N++     +       E A+    
Sbjct: 64  DIEQKKI--------FLIGCYVSKKGFTTENK----NIITINNDHKE-----EAAQIIFN 106

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
            +  D + E       I    +  +    A+L IQ+GC+ FC++C+V   RG   S   +
Sbjct: 107 TIQKDTNKE-------IKSPIFFPQEQSRAYLKIQDGCEVFCSYCIVSRVRGKHKSLEPN 159

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE--IKGLVRLRYT 266
           ++ +  +   D    EI L G N+ ++        +  F+D+L ++ E   K  +R+R +
Sbjct: 160 KIYEAIKIANDYNYKEIVLTGLNLGSYNF----NNEIKFADILKNILEHSSKYGIRIRLS 215

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
           +  P    D LI    + DVL P+ H+P+QSGS++ILK MNRR+T  EY   I+++  V 
Sbjct: 216 SVEPIYFDDELINLFKNKDVLCPHAHIPLQSGSNKILKLMNRRYTREEYLTSIEKLYKVN 275

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           P++AIS+D +VGFP E +DDF  T +L +K  + +   F+YS R  TP S M  ++    
Sbjct: 276 PNMAISTDVMVGFPEEENDDFNDTYNLCEKSKFIKMHVFRYSDRENTPSSKMQNKIGYRR 335

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
           K +R   L +   + + ++ +  +G+ ++V++E+
Sbjct: 336 KLKRAKLLNELNNKMKDNYYNNALGRKLDVIVEE 369


>gi|312114980|ref|YP_004012576.1| MiaB-like tRNA modifying enzyme [Rhodomicrobium vannielii ATCC
           17100]
 gi|311220109|gb|ADP71477.1| MiaB-like tRNA modifying enzyme [Rhodomicrobium vannielii ATCC
           17100]
          Length = 417

 Score =  164 bits (416), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 126/439 (28%), Positives = 204/439 (46%), Gaps = 30/439 (6%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V ++GC++N Y+S   +      G          D +++NTC +  +A  +    + ++R
Sbjct: 5   VITFGCRLNTYESEVAKKHAQDAGV--------TDAVIVNTCAVTGEAVRQARQAIRKLR 56

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVV-VGPQTYYRLPELLERARFGK 147
                  +E     ++V GC AQ E E         +V+  G +T       L      +
Sbjct: 57  -------RERPGAKIIVTGCAAQIEPETFADMDEADHVIGNGEKTSAATFLSLAAGDLAR 109

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
             V+   SV +    +  + G  +R R   A++ +Q GCD  CTFCV+P+ RG   S   
Sbjct: 110 VRVNDIASVRETAPHM--ISGFGSRAR---AYVEVQNGCDHRCTFCVIPFGRGPSRSVPA 164

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
            +VV + R L+++G  E+ L G ++ ++ G  L GE      +   L  +  L RLR ++
Sbjct: 165 GEVVHQIRALVEDGYREVVLTGVDLTSY-GADLPGEMKLGRLVRTVLRLVPELPRLRISS 223

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
               +  D LI A  + + LMP+LHL +QSG + ILK M RRH   +  +    +R +RP
Sbjct: 224 IDTMEADDALIDAFAEEERLMPHLHLSLQSGDNLILKRMKRRHAREDVIRFCREMREIRP 283

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
           D+   +D I GFP E +  F  T+ L D+ G +    F YSPR  T  + M  Q+D  + 
Sbjct: 284 DMVFGADLIAGFPTEDEAMFENTIRLADECGLSFMHVFPYSPRPKTAAARM-PQLDRALV 342

Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNI 447
            ER   L+ K   +  +      G++ EVL+E+      + VGR+P    + +       
Sbjct: 343 KERAARLRGKADTRLGTHLADETGKVFEVLMER------ERVGRTPGFTEIEIAGGAER- 395

Query: 448 GDIIKVRITDVKISTLYGE 466
           G I++ R T      L GE
Sbjct: 396 GGIVRARATGHDKRHLIGE 414


>gi|330817141|ref|YP_004360846.1| 2-methylthioadenine synthetase [Burkholderia gladioli BSR3]
 gi|327369534|gb|AEA60890.1| 2-methylthioadenine synthetase [Burkholderia gladioli BSR3]
          Length = 455

 Score =  164 bits (416), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 136/475 (28%), Positives = 217/475 (45%), Gaps = 56/475 (11%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
            P+  FV S GC   + DS ++     ++GYE   + D ADL+V+NTC   + A ++   
Sbjct: 4   TPKVGFV-SLGCPKALVDSEQIITQLRAEGYEISGTYDGADLVVVNTCGFIDDAVQESLD 62

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVA---QAEGEEILRR-SPIVNVVVGPQTYYRLPE 138
            +G         + E G   V+V GC+     A G  ++    P V  V GP   + L E
Sbjct: 63  AIGEA-------LTENGK--VIVTGCLGAKKSASGAGLIEEVHPKVLAVTGP---HALGE 110

Query: 139 LLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
           +++       V        D F  L +   G        A+L I EGC+  CTFC++P  
Sbjct: 111 VMQA------VHSHLPKPHDPFTDL-VPAAGIKLTPRHYAYLKISEGCNHRCTFCIIPSM 163

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTF 247
           RG  +SR +++V+ EA  L  +GV E+ ++ Q+ +A           W G+ L   K   
Sbjct: 164 RGDLVSRPVAEVMLEAENLFKSGVKELLVISQDTSAYGVDVKYRTGFWNGRPL---KTRM 220

Query: 248 SDLLYSLSEIKG----LVRLRYTTSHPR-DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
           ++L+ +L E+       VRL Y   +P  D    L+        ++PYL +P Q     +
Sbjct: 221 TELVAALGELAAQYGAWVRLHYVYPYPHVDEVIPLMAEGASRGHVLPYLDVPFQHADPDV 280

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVR---PDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
           LK M R   A    +++DR+R  R   PD+ I S FI GFPGET+  F   +D + +   
Sbjct: 281 LKRMRRPANA---EKVLDRVRKWREICPDLTIRSTFIAGFPGETEAQFETLLDFIREAEL 337

Query: 360 AQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419
            +   F YSP  G   + +   + + V+ ER     +   E   +  +  VGQ ++VLI+
Sbjct: 338 DRVGCFAYSPVEGATANELDGALPDEVREERRARFMEVAEEISAARIERKVGQTLKVLID 397

Query: 420 KHGKEK--GKLVGRSPWLQSVVL-----NSKNHNIGDIIKVRITDVKISTLYGEL 467
           +   E   G+    +P +  VV       +K + +GD + V IT      L+GE+
Sbjct: 398 EVNAEGGIGRTAADAPEIDGVVYVEPAQGAKRYKVGDFVPVTITGADGHDLWGEV 452


>gi|150025462|ref|YP_001296288.1| hypothetical protein FP1403 [Flavobacterium psychrophilum JIP02/86]
 gi|238065358|sp|A6GZF6|RIMO_FLAPJ RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|149772003|emb|CAL43479.1| Protein of unknown function [Flavobacterium psychrophilum JIP02/86]
          Length = 433

 Score =  164 bits (416), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 131/451 (29%), Positives = 223/451 (49%), Gaps = 45/451 (9%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA-AEKVYSFLGRI 87
           V + GC  NVYDS  +     + G   V+  ++ +++V+NTC   + A AE V + L   
Sbjct: 13  VITLGCSKNVYDSEVLMGQLKASGKNVVHE-EEGNIVVINTCGFIDNAKAESVNTILEYA 71

Query: 88  RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147
              +   + +     V V GC+++    ++ +  P V+   G      LP LL       
Sbjct: 72  DKKERGLVDK-----VFVTGCLSERYRPDLEKEIPNVDQYFGTT---ELPALL------- 116

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
           + +  DY  E   ERL+     Y       A+L I EGCD+ C+FC +P  RG  +S+++
Sbjct: 117 KALGADYRHELLGERLTTTPKNY-------AYLKISEGCDRPCSFCAIPLMRGKNVSQTI 169

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGL--VRLR 264
            ++V EA  L  NGV E+ L+ Q++  +   GLD  +K    +LL +L +I+G+  +RL 
Sbjct: 170 EKLVKEAEGLAKNGVKELILIAQDLTYY---GLDLYKKRALGELLEALVKIEGIEWIRLH 226

Query: 265 YT--TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           Y   T  P D+ + + +       +  Y+ +P+Q  SD ILKSM R  T  +  +++   
Sbjct: 227 YAFPTGFPMDVLEIMKREPK----ICNYIDIPLQHISDSILKSMKRGTTREKTTKLLKDF 282

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+  P +AI +  IVG+PGET++DF    + V ++ + +   F YS    T    +++ V
Sbjct: 283 RAAVPGMAIRTTLIVGYPGETEEDFEILKEFVQEMKFDRMGCFAYSHEENTGAYELVDDV 342

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQS- 437
            + VK  R L +     +     N   +GQ    +I++  KE G  VGR    SP + + 
Sbjct: 343 PDEVKQARSLEIMDLQSQISWDLNQEKLGQTFRCIIDR--KEGGHFVGRTEFDSPDVDNE 400

Query: 438 VVLNSKNHNI--GDIIKVRITDVKISTLYGE 466
           V++++  H +  G+ + ++I +     LYGE
Sbjct: 401 VLIDATKHYVKTGEFVNIKIIEATEFDLYGE 431


>gi|218282363|ref|ZP_03488645.1| hypothetical protein EUBIFOR_01227 [Eubacterium biforme DSM 3989]
 gi|218216649|gb|EEC90187.1| hypothetical protein EUBIFOR_01227 [Eubacterium biforme DSM 3989]
          Length = 432

 Score =  164 bits (416), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 119/403 (29%), Positives = 203/403 (50%), Gaps = 30/403 (7%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +F + + GC++N Y+S          GYE+V+     D+ ++NTC +   AA K    + 
Sbjct: 9   KFSIITLGCKVNAYESQYYAGQLEELGYEQVSPEKACDICIINTCTVTNTAASKSRQKIH 68

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
             + +         + L VV GC  Q   EE  R++   +++VG +    L  L+++A  
Sbjct: 69  YAKRM-------NPNALCVVVGCFVQCASEE-ERKALDADLIVGAKQKNELVNLIQQALK 120

Query: 146 GKRVVDTDYSVED--KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
               +D  + V     FE + +    +  +    AFL +Q+GC++FC++C +P+ RG E 
Sbjct: 121 DHEKIDVVHEVTQFKDFEAMPV----HCFESMHRAFLKVQDGCNQFCSYCAIPFARGRER 176

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE-IKGLVR 262
           S +  QV+  A+ L D G  EI L G +     G+  DGE    + L+ +L E     V 
Sbjct: 177 SLNHEQVIQIAKDLCDKGHTEIVLTGIHT----GRYFDGEY-DLAKLMKALLENTPDYVY 231

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
            R ++    ++SD LI    +   +  +LH+PVQS  +  LK MNR +T  ++++ I+ I
Sbjct: 232 YRISSIEITEVSDELIGLMQENSRMCHHLHIPVQSACNETLKRMNRPYTIEQFKEKIEYI 291

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           RS  PDI+IS+D I GF  E+D++F  T   + ++  +    F YS R GT  S +  ++
Sbjct: 292 RSCIPDISISTDVIAGFVQESDEEFETTYKNLAELELSFFHVFPYSKRNGTKASTLKGEI 351

Query: 383 DENV---KAERLLCLQKKLREQQVS-FNDACVGQIIEVLIEKH 421
           +  +   +  RLL L  + R++ +  FN       ++VLIE+ 
Sbjct: 352 NGKIAKARVARLLELSNECRKRDMQRFNP------VQVLIERQ 388


>gi|317503044|ref|ZP_07961124.1| Fe-S oxidoreductase [Prevotella salivae DSM 15606]
 gi|315665844|gb|EFV05431.1| Fe-S oxidoreductase [Prevotella salivae DSM 15606]
          Length = 446

 Score =  164 bits (416), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 112/402 (27%), Positives = 193/402 (48%), Gaps = 23/402 (5%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N  ++     M    G   V+  + AD+ ++NTC + E A  K    + R+   
Sbjct: 16  TLGCKLNFSETSTFGKMLSDMGVVTVDKGEKADICLINTCSVTEVADHKCRQAIHRM--- 72

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
                +E     ++V GC AQ E E++  + P V++V+G      L + L  A   +   
Sbjct: 73  ----ARENPGAFIIVTGCYAQLESEKV-SKIPGVDLVLGSNEKANLIQYLNDAFTKRETG 127

Query: 151 DTDYSVED-KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209
           +T +     K + +       ++      FL +Q+GC+ FCT+C +PY RG   + ++S 
Sbjct: 128 ETLHQFHSVKTKDIKTFQASCSKGNRTRYFLKVQDGCNYFCTYCTIPYARGFSRNPTISS 187

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT--FSDLLYSLSEIKGLVRLRYTT 267
           ++ +A +    G  EI L G N+  +      GE     F DL+ +L +++G+ R R ++
Sbjct: 188 LIKQAEEAAAEGGKEIVLTGVNIGDF------GETTHERFIDLVKALDKVEGIKRFRISS 241

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
             P  + D LI    +    MP+ H+P+QSGSD +LK M+RR+    +   I  I+ + P
Sbjct: 242 LEPDLIDDELIAFCAESRAFMPHFHIPLQSGSDTVLKLMHRRYDTSLFAHKIKLIKELMP 301

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG---SNMLEQVDE 384
           D  I  D +VG  GE  + F    + ++++   Q   F YS R GT       ++ + D+
Sbjct: 302 DAFIGVDVMVGCRGEKPEYFEECYNFLEQLPITQLHVFPYSERPGTSALAIPYVVNEKDK 361

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG 426
            ++++RLL L  K   +   F    +G   EVL EK  + K 
Sbjct: 362 KLRSKRLLELSDK---KTQLFYQKFIGSEREVLFEKAPRGKA 400


>gi|154491690|ref|ZP_02031316.1| hypothetical protein PARMER_01301 [Parabacteroides merdae ATCC
           43184]
 gi|154087931|gb|EDN86976.1| hypothetical protein PARMER_01301 [Parabacteroides merdae ATCC
           43184]
          Length = 440

 Score =  164 bits (416), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 124/421 (29%), Positives = 200/421 (47%), Gaps = 22/421 (5%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N  ++  +  +   QG  +    + AD+ V+NTC + E A +K    + RI   
Sbjct: 16  TLGCKLNFAETSTIGKVLAEQGVRKARPGEKADICVVNTCSVTELADKKCRQAIRRIG-- 73

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
                K+     +VV GC AQ + EE+      V++V+G +    L   L+  +  +   
Sbjct: 74  -----KQHPGAFIVVTGCYAQLKPEEVSHIEG-VDLVLGAEQKLDLLMYLDDLKKREEGG 127

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
               S        S      +R R    FL +Q+GCD FC++C +P+ RG   + +++ +
Sbjct: 128 AIIASRTKDIRTFSPSCSADDRTR---HFLKVQDGCDYFCSYCTIPFARGRSRNGTIASM 184

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270
           V +A ++  NG  EI L G N+  + GK   GE  TF DL+ +L E++G+VR R ++  P
Sbjct: 185 VKQAEEVASNGGKEIVLTGVNIGDF-GKST-GE--TFIDLIRALDEVEGIVRYRISSIEP 240

Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330
             ++D  I          P+ H+P+QSGSD +LK M RR+    +R  I++I+ V P   
Sbjct: 241 NLITDEAIDFVACSRRFAPHFHIPLQSGSDEVLKLMRRRYDTILFRHKIEKIKEVMPHAF 300

Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER 390
           I  D IVG  GETD  F      ++ +  +Q   F YS R GT    +   VD   K  R
Sbjct: 301 IGVDVIVGTRGETDTCFEEARTFIESLDISQLHVFSYSERPGTQALKIDHVVDPKTKHAR 360

Query: 391 LLCLQKKLREQQVSFNDACVGQIIEVLIEK-------HGKEKGKLVGRSPWLQSVVLNSK 443
              L      +  +F +A +GQ   VL E+       HG  +  +    P+  S+V  ++
Sbjct: 361 SQQLLDISDRKLHAFYEAHIGQKANVLFEQTRKGGMMHGFTENYIKVEIPYDHSLVNETR 420

Query: 444 N 444
            
Sbjct: 421 Q 421


>gi|313114955|ref|ZP_07800450.1| MiaB-like tRNA modifying enzyme [Faecalibacterium cf. prausnitzii
           KLE1255]
 gi|310622715|gb|EFQ06175.1| MiaB-like tRNA modifying enzyme [Faecalibacterium cf. prausnitzii
           KLE1255]
          Length = 431

 Score =  164 bits (416), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 121/432 (28%), Positives = 213/432 (49%), Gaps = 23/432 (5%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N+ ++  +E MF + G+      + AD+ V+N+C +     +K   +L R +  
Sbjct: 7   TLGCKVNLNETGALEQMFRANGFTIAQENEPADVFVVNSCTVTNFGDQKSRKWLRRKK-- 64

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
                +E    + V+ GC  QA  EE  + +    V         L  +L+     +R+V
Sbjct: 65  -----RENPGAVTVLTGCYPQAFPEEAAQFTEADLVCGNGDRKAILDNVLKLLDGHERIV 119

Query: 151 D-TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209
             T +   +KFE L +     + +    AF+ +++GC++ C +CV+P  RG   SR  + 
Sbjct: 120 AITPHQRGEKFEELPVERFETHTR----AFIKVEDGCNRQCAYCVIPRARGPVRSRDEAS 175

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSH 269
           ++ E R+L  +G  E+ L   ++ ++   GLD       +L+   ++++G+ R+R  +  
Sbjct: 176 ILAELRQLAASGYREVVLSAISLPSY---GLD-TGTNLVELVEHCAQVEGIQRIRLGSLD 231

Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV---R 326
           P  ++   I     ++ L P  HL +QSG    L+ M R +TA +Y Q++D++R+    R
Sbjct: 232 PDMLTPEFITRLAAVEKLCPQFHLSLQSGCTATLRRMRRVYTAEQYAQVVDQLRAAYGER 291

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           P ++ ++D I GFPGET  DF  + + + KIG+ +   F YS R GTP  +  EQV E  
Sbjct: 292 P-VSFTTDCICGFPGETQADFEESCEFLKKIGFLKVHVFPYSRRSGTPAYDFPEQVHERE 350

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL-VGRSPWLQSVVLNSKNH 445
           K ER   +     E +     A VG   +VL+E      G L  G +     VV+++  H
Sbjct: 351 KQERSRVMNGIAEEVRREVLTAYVGTEDDVLLET--PLSGTLFTGYTRLYIPVVVSAPGH 408

Query: 446 NIGDIIKVRITD 457
             G I+ V + +
Sbjct: 409 ESGQIVHVTLGE 420


>gi|167587080|ref|ZP_02379468.1| MiaB-like tRNA modifying enzyme YliG [Burkholderia ubonensis Bu]
          Length = 453

 Score =  164 bits (416), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 132/477 (27%), Positives = 216/477 (45%), Gaps = 61/477 (12%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  FV S GC   + DS ++     ++GYE   + D ADL+V+NTC   ++A ++    
Sbjct: 5   PKVGFV-SLGCPKALVDSEQIITQLRAEGYEISGTYDGADLVVVNTCGFIDEAVQESLDA 63

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVA---QAEGEEILRR-SPIVNVVVGPQTYYRLPEL 139
           +G         + E G   V+V GC+     A G  ++    P V  V GP     + + 
Sbjct: 64  IGEA-------LTENGK--VIVTGCLGAKKSASGSGLIEEVHPKVLAVTGPHAVGEVMQA 114

Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           +  +   K          D F  L +   G        A+L I EGC+  CTFC++P  R
Sbjct: 115 V-HSHLPKP--------HDPFVDL-VPAAGIKLTPRHYAYLKISEGCNHRCTFCIIPSMR 164

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFS 248
           G  +SR +++V+ EA  L  +GV E+ ++ Q+ +A           W GK +   K   +
Sbjct: 165 GDLVSRPVAEVMLEAENLFKSGVKELLVISQDTSAYGVDVKYRTGFWNGKPI---KTRMT 221

Query: 249 DLLYSLSEIKG----LVRLRYTTSHPRD------MSDCLIKAHGDLDVLMPYLHLPVQSG 298
           DL+ +L E+       VRL Y   +P        M++   K H     ++PYL +P Q  
Sbjct: 222 DLVAALGELAAQYGAWVRLHYVYPYPSVDEVIPLMAEGPFKGH-----VLPYLDVPFQHA 276

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
              +LK M R   A +  + + + R + PD+ I S FI GFPGET+  F   +D + +  
Sbjct: 277 HPEVLKRMKRPANAEKVLERVQKWREICPDLTIRSTFIAGFPGETEAQFETLLDFIREAE 336

Query: 359 YAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI 418
             +   F YSP  G   + +   + ++V+  R     +   E      +  VG+ ++VLI
Sbjct: 337 LDRVGCFAYSPVEGATANELDGALPDDVREARRARFMEVAEEVSAKRIERKVGKTLKVLI 396

Query: 419 EKHGKEK--GKLVGRSPWLQSVVL------NSKNHNIGDIIKVRITDVKISTLYGEL 467
           ++   E   G+    +P +  VV        SK + +GD + V+IT      L+GE+
Sbjct: 397 DEVSDEGGIGRTAADAPEIDGVVYVEPAQKASKRYKVGDFVSVKITGADGHDLWGEV 453


>gi|288801250|ref|ZP_06406705.1| 2-methylthioadenine synthetase [Prevotella sp. oral taxon 299 str.
           F0039]
 gi|288331861|gb|EFC70344.1| 2-methylthioadenine synthetase [Prevotella sp. oral taxon 299 str.
           F0039]
          Length = 447

 Score =  164 bits (416), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 116/403 (28%), Positives = 199/403 (49%), Gaps = 24/403 (5%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N  ++     M    G   V   + AD+ ++NTC + E A  K        R  
Sbjct: 16  TLGCKLNFSETSTFGKMLQGMGVRTVERGERADICLINTCSVTEVADHKC-------RQA 68

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG---K 147
            N  ++E     V+V GC AQ E E I +    V++V+G      L + L  A      K
Sbjct: 69  INRMVRENPGSFVIVTGCYAQLESERISKMEG-VDLVLGSNEKANLIQYLSDAWSNGEEK 127

Query: 148 RVVDTDY-SVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
            + D+ + SV+ K   +       +R      FL +Q+GC  FCT+C +P+ RG   + S
Sbjct: 128 NINDSSFHSVKTK--DIKTFAASCSRGNRTRYFLKVQDGCSYFCTYCTIPFARGFSRNPS 185

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
           +S +V++A +    G  EI L G N+  +   G+   + TF DL+ +L +++G+ R R +
Sbjct: 186 ISSLVEQAEQAAREGGKEIVLTGVNIGDF---GVSTNE-TFFDLIKALDKVEGIKRFRIS 241

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
           +  P  +SD +I+   +    MP+ HLP+QSGS+ +L+ M R++    +   + +I+++ 
Sbjct: 242 SLEPDLLSDEIIEYCANSRAFMPHFHLPLQSGSNDVLRLMKRKYDRELFADKVHKIKTLI 301

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG---SNMLEQVD 383
           P+  I  D +VG  GE  + F    + +D +   Q   F YS R GT       ++   D
Sbjct: 302 PNAFIGVDVMVGSRGEKPEFFEDCYNFLDSLDVTQLHVFPYSERRGTAALKIPYIVNDKD 361

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG 426
           + ++++RLL L      +  +F  A +G+  +VL EK+ K K 
Sbjct: 362 KKLRSKRLLDLSDT---KTQAFYAAHLGKTAQVLFEKNIKGKA 401


>gi|282850499|ref|ZP_06259878.1| MiaB-like protein [Veillonella parvula ATCC 17745]
 gi|294792122|ref|ZP_06757270.1| MiaB tRNA modifying enzyme-like protein [Veillonella sp. 6_1_27]
 gi|294793993|ref|ZP_06759130.1| MiaB tRNA modifying enzyme-like protein [Veillonella sp. 3_1_44]
 gi|282579992|gb|EFB85396.1| MiaB-like protein [Veillonella parvula ATCC 17745]
 gi|294455563|gb|EFG23935.1| MiaB tRNA modifying enzyme-like protein [Veillonella sp. 3_1_44]
 gi|294457352|gb|EFG25714.1| MiaB tRNA modifying enzyme-like protein [Veillonella sp. 6_1_27]
          Length = 448

 Score =  164 bits (416), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 127/440 (28%), Positives = 219/440 (49%), Gaps = 29/440 (6%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA-AEKVYSFLGRIRN 89
           S GC  N+ D+  M  +    GY     + +ADLIV+NTC   EKA AE + + L     
Sbjct: 9   SLGCAKNLVDTEVMLGLLRDNGYSITEDLSEADLIVVNTCTFIEKAKAESINTIL----- 63

Query: 90  LKNSRIKEGGDLL-VVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
            + ++ KE G    ++VAGC++Q   +E+ +  P ++ ++G   + ++   ++    G R
Sbjct: 64  -EVAQYKEDGTCKGLIVAGCLSQQYQDELFQEIPEIDALIGTGAWDQVMVAVDAIEHGNR 122

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
               +       ER+  +          +A++ I EGC+  CTFC++P  RG   SR++ 
Sbjct: 123 SCIMENITNIYDERMPRI----QTTPRYSAYVKIAEGCNNGCTFCIIPKVRGAFRSRTIE 178

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
            +  E  +L   GV E+ L+ Q+  ++ G  L+  K   + LL  L+ ++G+  +R    
Sbjct: 179 SIKAEVERLAATGVKEVVLIAQDTTSY-GIDLNAGKPLLTTLLKELTTVEGIEWIRMLYL 237

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
           +P   SD L+    +   L  Y+ +P+Q  ++ ILK MNRR    +  +++ +IR+    
Sbjct: 238 YPTFFSDELLDIIVNEPKLCKYVDIPLQHVNNDILKQMNRRDDRNDIERLLKKIRNAPTH 297

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           I + +  IVGFPGETD+ F    D V +I +     F YS   GTP     +Q+ E VK 
Sbjct: 298 ITLRTSIIVGFPGETDEQFEELCDFVKEIKFDNMGVFTYSQEDGTPAGAREDQIPEEVKE 357

Query: 389 ER---LLCLQKKLREQQVSFNDACVGQIIEVLIE--KHGKE-----KGKLVGRSPWLQ-S 437
           ER   L+ +Q  + E+    N    G I   ++E  + G+      KG+L  ++P +  +
Sbjct: 358 ERYHVLMSIQAAISEEN---NRNLEGTIDYAMVEEIEEGENNTLLAKGRLKSQAPDVDGN 414

Query: 438 VVLNSKNHNI--GDIIKVRI 455
           + +     +I  GDI+KV++
Sbjct: 415 MYIEDCGEDIQPGDILKVQV 434


>gi|161524661|ref|YP_001579673.1| ribosomal protein S12 methylthiotransferase [Burkholderia
           multivorans ATCC 17616]
 gi|160342090|gb|ABX15176.1| MiaB-like tRNA modifying enzyme YliG [Burkholderia multivorans ATCC
           17616]
          Length = 468

 Score =  164 bits (416), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 133/477 (27%), Positives = 216/477 (45%), Gaps = 61/477 (12%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  FV S GC   + DS ++     ++GYE   + D ADL+V+NTC   ++A ++    
Sbjct: 20  PKVGFV-SLGCPKALVDSEQIITQLRAEGYEISGTYDGADLVVVNTCGFIDEAVQESLDA 78

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVA---QAEGEEILRR-SPIVNVVVGPQTYYRLPEL 139
           +G         + E G   V+V GC+     A G  ++    P V  V GP     + + 
Sbjct: 79  IGEA-------LTENGK--VIVTGCLGAKKSASGSGLIEEVHPKVLAVTGPHAVGEVMQA 129

Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           +  +   K          D F  L +   G        A+L I EGC+  CTFC++P  R
Sbjct: 130 V-HSHLPKP--------HDPFVDL-VPPAGIKLTPRHYAYLKISEGCNHRCTFCIIPSMR 179

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFS 248
           G  +SR +++V+ EA  L  +GV E+ ++ Q+ +A           W GK +   K   +
Sbjct: 180 GDLVSRPVAEVMLEAENLFKSGVKELLVISQDTSAYGVDVKYRTGFWNGKPI---KTRMT 236

Query: 249 DLLYSLSEIKG----LVRLRYTTSHPRD------MSDCLIKAHGDLDVLMPYLHLPVQSG 298
           DL+ +L E+       VRL Y   +P        M++   K H     ++PYL +P Q  
Sbjct: 237 DLVAALGELAAQYGAWVRLHYVYPYPSVDEVIPLMAEGPFKGH-----VLPYLDVPFQHA 291

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
              +LK M R   A +  + + + R + PD+ I S FI GFPGET+  F   +D + +  
Sbjct: 292 HPDVLKRMKRPANAEKVLERVQKWREICPDLTIRSTFIAGFPGETEAQFETLLDFIREAE 351

Query: 359 YAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI 418
             +   F YSP  G   + +   + ++V+ ER     +   E         VG+ ++VLI
Sbjct: 352 LDRVGCFAYSPVEGASANELDGALPDDVREERRARFMEVAEEVSARRIARKVGKTLKVLI 411

Query: 419 EKHGKEK--GKLVGRSPWLQSVVL------NSKNHNIGDIIKVRITDVKISTLYGEL 467
           ++   E   G+    +P +  VV        SK + +GD + V+IT      L+GE+
Sbjct: 412 DEVSDEGGIGRTAADAPEIDGVVYVEPATKASKRYKVGDFVSVKITGADGHDLWGEV 468


>gi|73748729|ref|YP_307968.1| MiaB family tRNA modification protein [Dehalococcoides sp. CBDB1]
 gi|147669495|ref|YP_001214313.1| MiaB-like tRNA modifying enzyme [Dehalococcoides sp. BAV1]
 gi|73660445|emb|CAI83052.1| tRNA modification enzyme, MiaB family [Dehalococcoides sp. CBDB1]
 gi|146270443|gb|ABQ17435.1| MiaB-like tRNA modifying enzyme [Dehalococcoides sp. BAV1]
          Length = 416

 Score =  164 bits (416), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 113/405 (27%), Positives = 191/405 (47%), Gaps = 33/405 (8%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           + + GC++N  ++  M   F   GY  V+  D+ D+ +LNTC +   A  K   +  RI 
Sbjct: 6   LDTLGCKLNQAETEAMGREFAQAGYHLVSPQDNWDIYILNTCTVTHVADRKA-RYQMRIA 64

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
              N          + + GC A+  G EI    P  N+++                  ++
Sbjct: 65  RRHNP------SGFICLTGCYAENGGNEI--SCPDANLILD----------------NRQ 100

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
             D   ++   F   +     Y + R   +F+ IQ+GCD FCT+C+VP+ R  +  R + 
Sbjct: 101 KTDIVNNIIRLFPLENSASALYEKGR-TRSFIKIQDGCDNFCTYCIVPFVRRYKNCRGVD 159

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
            ++ E       G  EI L G  +  +   G +      + L+ ++ E   + RLR ++ 
Sbjct: 160 DIISEINLRQAEGYQEIVLTGTEIGEYTSSGFN-----LAGLIEAILERTRIPRLRLSSL 214

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
            P +++  L+    +   L  + H+ +QSGSDRIL  MNR ++  +Y + ++ IR   PD
Sbjct: 215 QPNEITLPLLALWKNRR-LCNHFHMALQSGSDRILGLMNRPYSLTDYTRTLEAIRRQIPD 273

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           +A+++D IVGFPGETD+DF  ++  V++ G+A+   F YS R GT  S + ++VD  V  
Sbjct: 274 VAVTTDMIVGFPGETDEDFACSLKYVEQAGFARVHPFPYSERPGTMASQLTDKVDPVVIK 333

Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSP 433
            RL  +    +   + +         EVL E   K+ G   G +P
Sbjct: 334 TRLSGMMLAAKNASLEYRHQSRDLEKEVLWENKMKD-GLWFGYTP 377


>gi|282860156|ref|ZP_06269231.1| MiaB-like protein [Prevotella bivia JCVIHMP010]
 gi|282587045|gb|EFB92275.1| MiaB-like protein [Prevotella bivia JCVIHMP010]
          Length = 451

 Score =  164 bits (416), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 120/446 (26%), Positives = 204/446 (45%), Gaps = 22/446 (4%)

Query: 33  GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92
           GC++N  ++       ++ G       + AD++++NTC + E A  K        R + N
Sbjct: 18  GCKLNFSETSTFARTLYNMGVHEAKKSEVADIVLINTCSVTEVADHKC-------RQIIN 70

Query: 93  SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDT 152
             +++     V+V GC AQ E E +      VN+V+G      L + L  A      V T
Sbjct: 71  RMVRQNPGAFVIVTGCYAQLESETVANIEG-VNLVLGSNEKANLVQYLSDAWNKVEEVST 129

Query: 153 DYSVEDK------FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
               E+K       + ++      +R      FL +Q+GC+ FCT+C +PY RG   + S
Sbjct: 130 ANGEENKKYHTVKTKDITTFQASCSRGNRTRYFLKVQDGCNYFCTYCTIPYARGFSRNPS 189

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
           ++ +V +A + +  G  EI L G N+  + G+       +F DL+ +L +++G+ R R +
Sbjct: 190 IASLVKQAEEAVAEGGREIVLTGVNIGDF-GRTTSE---SFLDLVKALDKVEGIERYRIS 245

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
           +  P  + D LI         MP+ H+P+QSGSD +LK M+R +    +   I+ I+   
Sbjct: 246 SLEPDLIDDELIAYCATSKHFMPHFHIPLQSGSDEVLKLMHRHYDRALFANKINLIKEYM 305

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           P+  I  D +VG  GE  + F    + +D +   Q   F YS R GT   ++   VD   
Sbjct: 306 PNAFIGVDVMVGSRGEKPEYFEDCYNFLDALPVTQLHVFPYSERPGTSALSIPYVVDPRE 365

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK--HGKEKGKLVGRSPWLQSVVLNSKN 444
           K  R   L K   ++  +F    +GQ  ++L EK   GK           ++     +K+
Sbjct: 366 KKHRANRLLKLSDQKTQAFYAQHIGQEADILFEKAVRGKAMHGFTDNYIRVELSPAEAKD 425

Query: 445 HNIGDIIKVRITDVKI--STLYGELV 468
                I++VR+ D     + L  E++
Sbjct: 426 EYDNKIVRVRLGDFNFDKTALKAEII 451


>gi|307207026|gb|EFN84849.1| CDKAL1-like protein [Harpegnathos saltator]
          Length = 542

 Score =  164 bits (416), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 130/464 (28%), Positives = 221/464 (47%), Gaps = 46/464 (9%)

Query: 22  IVP--QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEK 79
           I+P  Q  +VK++GC  N  D+  M     +QGY  ++    ADL +LN+C ++  A ++
Sbjct: 49  IIPGTQTVYVKTWGCTHNSSDAEYMAGQLAAQGYNLIDDKLKADLWLLNSCTVKNPAEDQ 108

Query: 80  VYSFLGRIRN-LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVN--VVVGPQTYYRL 136
                   RN ++N R K G    +VVAGCV Q        +SP +    ++G Q   R+
Sbjct: 109 -------FRNEIENGR-KAGKH--IVVAGCVPQGAP-----KSPFLKGLSIIGVQQIDRV 153

Query: 137 PELLERARFGK--RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCV 194
            E++E    G   R + T  +   +    S ++    RK      + I  GC   CT+C 
Sbjct: 154 VEVVEETLKGHTVRFLRTKKNSTGRKIGGSTLNLPKIRKNPRIEIIAISTGCLNQCTYCK 213

Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL 254
             + RG   S    ++V  A +  + GVCE+ +  ++  A+ G+ +        +LL+ L
Sbjct: 214 TKHARGQLGSYPPDEIVARALQAFEEGVCELWITSEDTGAY-GRDIG---TNLPELLWKL 269

Query: 255 SEIK--------GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306
            ++         G+    Y   H  +++  L         +  +LH+PVQSGSD++L  M
Sbjct: 270 VDVIPESCMMRIGMTNPPYILEHLDEIAKILRHPK-----VYSFLHIPVQSGSDQVLADM 324

Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
            R +T  ++  +++ +R   PD+ I++D I GFP ET+++F  T+ L  K  +   F  +
Sbjct: 325 KREYTRADFEHVVNYLRERVPDLTIATDIICGFPSETEENFEETLTLCRKYKFPSLFINQ 384

Query: 367 YSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFN--DACVGQIIEVLIEKHGKE 424
           + PR GTP + M     + VKA       KKL E   S+   +  VG++  VL+ +   +
Sbjct: 385 FFPRPGTPAARMPRIPTQQVKAR-----TKKLTELFYSYEPYENQVGKLCCVLVTEVAHD 439

Query: 425 KGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           K   VG + +   V+L  +   +G +I VRIT+    ++  E V
Sbjct: 440 KLHYVGHNKFYGQVLLPKEEEYMGMMILVRITEATKFSMKAEYV 483


>gi|299147882|ref|ZP_07040945.1| 2-methylthioadenine synthetase [Bacteroides sp. 3_1_23]
 gi|298514065|gb|EFI37951.1| 2-methylthioadenine synthetase [Bacteroides sp. 3_1_23]
          Length = 439

 Score =  164 bits (416), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 115/396 (29%), Positives = 200/396 (50%), Gaps = 28/396 (7%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N  ++  +  +    G   V   + AD+ V+NTC + E A +K    + R+   
Sbjct: 16  TLGCKLNFSETSTIGKILREAGVRTVRKGEKADICVVNTCSVTEMADKKCRQAIHRL--- 72

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL---ERARFGK 147
               +K+     VVV GC AQ +  ++ +    V+VV+G +    L + L   ++   G+
Sbjct: 73  ----VKQHPGAFVVVTGCYAQLKPGDVAKIDG-VDVVLGAEQKGELLQYLGDLQKHEKGE 127

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
            +  T   +       S  D    R R    FL +Q+GCD FC++C +P+ RG   + ++
Sbjct: 128 AITTTTKDIRSFSPSCSRGD----RTR---FFLKVQDGCDYFCSYCTIPFARGRSRNGTI 180

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
           + +V++AR+    G  EI L G N+  + GK   GE  +F DL+ +L +++G+ R R ++
Sbjct: 181 ASMVEQARQAAAEGGKEIVLTGVNIGDF-GK-TTGE--SFFDLVKALDQVEGIERYRISS 236

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
             P  ++D +I+        MP+ H+P+QSG D +L+ M RR+    +   + +I+ V P
Sbjct: 237 IEPNLLTDAIIEFVSHSRSFMPHFHIPLQSGCDEVLQLMRRRYDTALFASKVRKIKEVMP 296

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG---SNMLEQVDE 384
           D  I  D IVG  GET + F      +D +   Q   F YS R GT       ++   ++
Sbjct: 297 DAFIGVDVIVGTRGETPEYFEQAYQFIDGLDVTQLHVFSYSERPGTQALKIEYVVSPEEK 356

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
           + +++RLL L     ++  +F    +GQ++ VLIEK
Sbjct: 357 HQRSQRLLTLSD---QKTQAFYARHIGQVMPVLIEK 389


>gi|319899903|ref|YP_004159631.1| MiaB-like tRNA modifying enzyme [Bacteroides helcogenes P 36-108]
 gi|319414934|gb|ADV42045.1| MiaB-like tRNA modifying enzyme [Bacteroides helcogenes P 36-108]
          Length = 439

 Score =  164 bits (416), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 118/391 (30%), Positives = 193/391 (49%), Gaps = 18/391 (4%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N  ++  +  +    G   V   + AD+ V+NTC + E A +K    + R+   
Sbjct: 16  TLGCKLNFSETSTIGKILREAGVRTVRKGEKADICVVNTCSVTEVADKKCRQAIHRL--- 72

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               +K+     VVV GC AQ + E + +    V+VV+G +    L + L      K   
Sbjct: 73  ----VKQHPGAFVVVTGCYAQLKPEAVAKIEG-VDVVLGAEQKKDLLQYL--GNLQKHET 125

Query: 151 DTDY-SVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209
              Y SV       +      +R R    FL +Q+GCD +C++C +P+ RG   + +++ 
Sbjct: 126 GEAYTSVLKDIHSFAPSCSRGDRTR---FFLKVQDGCDYYCSYCTIPFARGRSRNGTVAS 182

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSH 269
           +V++AR+ + +G  EI L G N+  + GK   GE  TF DL+ +L  ++G+ R R ++  
Sbjct: 183 MVEQARQAVADGGKEIVLTGVNIGDF-GKST-GE--TFFDLVKALDGVEGIERYRISSIE 238

Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329
           P  ++D +I+        MP+ H+P+QSGSD +LK M RR+    +   I RI+ V PD 
Sbjct: 239 PNLLTDEIIEYVAGSRRFMPHFHIPLQSGSDEVLKLMRRRYDTALFASKIRRIKEVMPDA 298

Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAE 389
            I  D IVG  GET++ F      +  +   Q   F YS R GT    +   V    K E
Sbjct: 299 FIGVDVIVGTRGETEEYFEQAYQFIGSMDVTQLHVFSYSERPGTQALKIDHVVSPAEKHE 358

Query: 390 RLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
           R   L +   E+  +F    +G ++ VL+E+
Sbjct: 359 RSRRLLELSEEKTRAFYARHIGSVMPVLLER 389


>gi|119478493|ref|ZP_01618455.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [marine gamma
           proteobacterium HTCC2143]
 gi|119448474|gb|EAW29722.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [marine gamma
           proteobacterium HTCC2143]
          Length = 480

 Score =  164 bits (416), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 132/460 (28%), Positives = 220/460 (47%), Gaps = 38/460 (8%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           Q+    S GC   + DS R+       GY+   +  +AD++V+NTC   + A ++    +
Sbjct: 35  QKVGFISLGCPKALVDSERILTQLKLDGYDISPNYHEADVVVVNTCGFIDSAKQESMDAI 94

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQA-EGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
                  +  I E G   V+V GC+ +  + E I   +P V  V GP  Y  + + + + 
Sbjct: 95  -------SEAINENGK--VIVTGCMGKGTDAESIKAANPDVLSVSGPADYTSVMDAVHQ- 144

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            F      T   + D      I   G        A+L I EGC+  CTFC++P  RG  +
Sbjct: 145 -FIPPTAATHNPLIDL-----IPPQGVKLTPQHYAYLKISEGCNHRCTFCIIPDMRGDLV 198

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYSLS 255
           SR ++ VV EA+ L+  GV E+ ++ Q+ +A+      +   +DG+  +    DL  +L 
Sbjct: 199 SRPIADVVSEAKTLVAAGVRELLVISQDTSAYGVDVKYKLDFVDGQARETRMLDLAVALG 258

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
           E+   VRL Y   +P       + A G +   +PYL +P Q  S RILK M R     + 
Sbjct: 259 ELGVWVRLHYVYPYPHVDKIIPLMAAGKI---LPYLDIPFQHASPRILKLMKRPGNQEKV 315

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
            + I   R++ P++ I S F+VGFPGET+DDF+  +D + +    +   FKYSP  G   
Sbjct: 316 LERIKNWRTICPELVIRSTFVVGFPGETEDDFQLLLDWLQEAQLDRVGCFKYSPVEGAKA 375

Query: 376 SNMLEQVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVG 430
           +++ + V E +   + ER +  Q+ +  Q++      +GQ +EVLI++  ++   G+   
Sbjct: 376 NDLPDHVPEAIQQQRWERFMETQQHISAQRLQQR---IGQQLEVLIDEVDEQGAVGRCYA 432

Query: 431 RSPWLQSVVL--NSKNHNIGDIIKVRITDVKISTLYGELV 468
            +P +   V   +  +  +GD + V IT      L+ E V
Sbjct: 433 DAPEIDGKVYLDDFTDTFVGDALLVTITGADEYDLWAEPV 472


>gi|288802855|ref|ZP_06408292.1| 2-methylthioadenine synthetase [Prevotella melaninogenica D18]
 gi|288334672|gb|EFC73110.1| 2-methylthioadenine synthetase [Prevotella melaninogenica D18]
          Length = 449

 Score =  164 bits (416), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 113/401 (28%), Positives = 192/401 (47%), Gaps = 18/401 (4%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N  ++       ++ G       + AD+ ++NTC + E A  K    + R+   
Sbjct: 16  TLGCKLNFSETSTFARTLYNMGVREAKKTEQADICLINTCSVTEVADHKCRQIIHRM--- 72

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               +++     V+V GC AQ E   + +    V++V+G      L + L  A + K   
Sbjct: 73  ----VRQNPGAFVIVTGCYAQLESATVAKIEG-VDLVLGSNEKADLVQYLSDA-WNKVDT 126

Query: 151 DTDYSVEDKFERLSIVD-----GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
             + + E ++  +   D        +R      FL +Q+GC+ FCT+C +P+ RG   + 
Sbjct: 127 AKEETSEGEYHSVKTKDIKSFQASCSRGNRTRYFLKVQDGCNYFCTYCTIPFARGFSRNP 186

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           ++  +V +A +    G  EI L G N+  + GK   GE  +F DL+ +L +++G+ R R 
Sbjct: 187 TIQSLVAQAEEAAREGGKEIVLTGVNIGDF-GK-TTGE--SFLDLVKALDKVEGIQRFRI 242

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
           ++  P  + D LI    +    MP+ H+P+QSGSD +L+ M+RR+    + + I  I+  
Sbjct: 243 SSLEPDLIDDELIAYCAESRAFMPHFHIPLQSGSDEVLELMHRRYDTALFARKIKLIKEK 302

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            PD  I  D +VG  GE  + F    + +D +   Q   F YS R GT   ++   VD+ 
Sbjct: 303 MPDAFIGVDVMVGSRGERPEYFEDCYNFLDSLPVTQLHVFPYSERPGTAALSIPYVVDDR 362

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG 426
            K  R   L K   E+  +F  A +GQ  +VL EK  + K 
Sbjct: 363 EKKHRAHKLLKLSDEKTRAFYAAHIGQEADVLFEKAARGKA 403


>gi|31789483|gb|AAP58596.1| conserved hypothetical protein [uncultured Acidobacteria bacterium]
          Length = 410

 Score =  164 bits (416), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 112/368 (30%), Positives = 186/368 (50%), Gaps = 27/368 (7%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           + + ++GC++N  DSL +E    S+G   +   + AD++++NTC +   A +     + R
Sbjct: 5   YALVTFGCRVNQADSLALEGQLRSRGAV-LAPPERADVVIVNTCSVTAAADQGARQTVRR 63

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           +        ++     VVV GC A     E+     +V+VV  P    R   L++     
Sbjct: 64  V-------TRDNPAARVVVTGCYASRCAGEVAALPNVVHVV--PND--RKESLVD----- 107

Query: 147 KRVVDTDYSVEDKFERLSI----VDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
             +++ + +   +F         ++ G   +  +T  L +Q GCD+ C++C++P TRG  
Sbjct: 108 --LIEWEPTTATRFGGGDGPCGGLEPGVGGRTALT--LRVQTGCDETCSYCIIPRTRGSS 163

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR L  V     + ID G  EI + G ++ ++ G+ L G+  T   L+  L++  G V 
Sbjct: 164 RSRPLELVTAGIARAIDAGYKEIAITGVHLGSY-GRDL-GDGTTLVALVRRLADWPGDVL 221

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
            R ++  P D SD L+        + P+ HLP+Q G+DR+L++M R +TA  YR++++RI
Sbjct: 222 FRLSSLEPMDCSDALVDLVACSPRVAPHFHLPLQHGADRVLRAMRRPYTAGFYRRLVERI 281

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+  P  A+ SD IVGFPGE  +DF  +  LV  +   Q   F YS R GT  S    +V
Sbjct: 282 RARLPHAAVGSDLIVGFPGEATEDFEESRALVASLPLTQLHVFPYSDRPGTEASGAGRKV 341

Query: 383 DENVKAER 390
           +  V  ER
Sbjct: 342 EGAVIRER 349


>gi|317503240|ref|ZP_07961298.1| 2-methylthioadenine synthetase [Prevotella salivae DSM 15606]
 gi|315665653|gb|EFV05262.1| 2-methylthioadenine synthetase [Prevotella salivae DSM 15606]
          Length = 433

 Score =  164 bits (415), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 124/452 (27%), Positives = 217/452 (48%), Gaps = 43/452 (9%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEKVYSFLGRIR 88
           + GC  N+ DS  +   F + GY  V+     D ++ V+NTC   E A E+  + +    
Sbjct: 10  TMGCSKNLVDSELLMKQFEANGYHCVHDSKRPDGEIAVINTCGFIESAKEESINTILEFV 69

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF--- 145
           N KN    EG    + V GC++Q   +E+ +  P V+   G   Y +L   L +A     
Sbjct: 70  NAKN----EGRLKRLYVMGCLSQRYKDELEQEIPEVDKFYGKFNYKQLLTDLGKADVPSC 125

Query: 146 -GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G+R + T                         A++ I EGC++ C +C +P   G   S
Sbjct: 126 NGRRHLTTPRHY---------------------AYVKIAEGCNRQCAYCAIPLITGKHTS 164

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R   +++ E ++L++ GV E  ++ Q +  + G  +DG++   +DL+  +++IKG+  +R
Sbjct: 165 RPKEEILQEVKELVEEGVKEFQIIAQELTYY-GVDIDGQR-HIADLIRDIADIKGVEWIR 222

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
              ++P +    L+    +   +  YL + +Q  S+ +L +M+R  +  E  ++I +IR 
Sbjct: 223 LHYAYPNEFPLELLDVIREKPNVCKYLDIALQHISNHMLDAMHRHVSKEETVELIKKIRE 282

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT-PGSNMLEQVD 383
             P I I +  +VGFPGETD+DF   +D V    + +  +F YS   GT    +  + V 
Sbjct: 283 AVPGIHIRTTLLVGFPGETDEDFNELVDFVKWAKFERMGAFTYSEEEGTYSAGHYKDDVS 342

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV---- 439
           E VK +RL  L    +E   +  +A +G+ ++V+I++  KE    VGRS +    V    
Sbjct: 343 EEVKQKRLDTLMAVQQEISAAVEEAKIGKTLKVIIDR--KEGDYYVGRSEFCSPEVDPEV 400

Query: 440 ---LNSKNHNIGDIIKVRITDVKISTLYGELV 468
              ++ K   +G+   V ITD +   LYG ++
Sbjct: 401 LIPVSEKKLRVGNFYHVEITDSEAFDLYGHVI 432


>gi|262370220|ref|ZP_06063546.1| MiaB-like tRNA modifying enzyme YliG [Acinetobacter johnsonii
           SH046]
 gi|262314562|gb|EEY95603.1| MiaB-like tRNA modifying enzyme YliG [Acinetobacter johnsonii
           SH046]
          Length = 447

 Score =  164 bits (415), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 131/468 (27%), Positives = 221/468 (47%), Gaps = 52/468 (11%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  FV S GC   + DS R+     ++GY+  +  D ADL+V+NTC   E A ++    
Sbjct: 4   PKVGFV-SLGCPKALVDSERILTQLKTEGYDVASDYDGADLVVVNTCGFIESAVQESLDA 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G   +  N R        V+V GC+ + E ++I +  P V  V G   Y  + E + + 
Sbjct: 63  IGEAMS-ANGR--------VIVTGCLGKDE-DKIRQMHPNVLKVTGAAAYQEVMEAVHQY 112

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
                    +    + F  L + + G        A+L I EGC+  CTFC++P  RG  +
Sbjct: 113 V-------PEPPKHNPFIDL-VPEQGIRLTPKHYAYLKISEGCNHRCTFCIIPSMRGDLV 164

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLY 252
           SR +  V++EA  L   GV E+ ++ Q+ +A           W G+ +   K  F D+  
Sbjct: 165 SRPVGSVLEEAAALKRAGVKEVLVISQDTSAYGLDTKYKLDFWNGQPV---KTKFYDMCE 221

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
           +L ++   VRL Y   +P   +   + A G    ++PYL +P Q  S ++LK M R   +
Sbjct: 222 ALGQLGIWVRLHYVYPYPHVDAVIDLMAQGK---ILPYLDIPFQHASPKVLKLMKRPAHS 278

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
               + +   R   PD+ + S F+VGFPGET++DF   ++ + +    +   F YSP  G
Sbjct: 279 ENTLERLKLWREKCPDLVLRSTFVVGFPGETEEDFEILLEWLKEAQLDRVGCFTYSPVEG 338

Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDAC----VGQIIEVLIEKHGKEKGKL 428
              +++ + V E +K +R     ++  E Q + + A     VGQ + VL+++  +E    
Sbjct: 339 ATANDLPDHVPEEIKQQRY----ERFMEVQQAISAAKLRKRVGQKMTVLVDELDEEFPVA 394

Query: 429 VGRS----PWLQSVV----LNSKNHNIGDIIKVRITDVKISTLYGELV 468
           + RS    P +   V    ++      GD+++V ITD     LY +L+
Sbjct: 395 IARSYADAPEIDGNVFVEDIDKSQIKSGDLLEVEITDADEYDLYAQLI 442


>gi|115522348|ref|YP_779259.1| MiaB-like tRNA modifying enzyme [Rhodopseudomonas palustris BisA53]
 gi|115516295|gb|ABJ04279.1| MiaB-like tRNA modifying enzyme [Rhodopseudomonas palustris BisA53]
          Length = 421

 Score =  164 bits (415), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 124/404 (30%), Positives = 194/404 (48%), Gaps = 38/404 (9%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V ++GC++N ++S  +     + G          D IV+N+C +  +A  +       IR
Sbjct: 5   VLTFGCRLNTHESELIRREAEAAGC--------VDTIVVNSCAVTNEAVAQARQ---SIR 53

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
            LK    +E     +VV GC AQ E   +    P V+ V+G     R       A    R
Sbjct: 54  RLK----REHPQARIVVTGCAAQTE-TAMFGAMPEVDRVLGNADKLR-----GEAWRATR 103

Query: 149 VVDTDYSVEDKFERLSIVDGGYNR----------KRGVT-AFLTIQEGCDKFCTFCVVPY 197
               +   +   +++++ D    R          +RG+   F+ +Q GCD  CTFC++P+
Sbjct: 104 AAFDNAGPDSSTDKIAVADIMAVREMAPHLIEGFQRGLPRVFVQVQNGCDHRCTFCIIPF 163

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257
            RG   S     V+++ R L   G  EI L G ++ ++ G  L G     +     L E+
Sbjct: 164 GRGPSRSLPPGAVIEQVRTLAARGHAEIVLTGVDLTSY-GCDLSGAPSLGALTKLILREV 222

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
             L RLR ++    +    L+ A  + D LMP+LHL +QSG D ILK M RRH+  +   
Sbjct: 223 PELRRLRLSSIDSIEADRDLLDAVANEDRLMPHLHLSLQSGDDLILKRMKRRHSRADSVA 282

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
           +   +R +RPDI + +D I GFP ETD  F  ++DL++  G +    F YSPR GTP + 
Sbjct: 283 LCAELRRLRPDIVLGADLIAGFPTETDAAFTRSLDLIEDCGLSLLHVFPYSPRPGTPAAK 342

Query: 378 M--LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419
           M  L+ V    +A+RL    +    +++   DA +GQ  +VLIE
Sbjct: 343 MPPLDGVVIKERAKRLRAAGEAALRRRI---DAEIGQSRQVLIE 383


>gi|240850637|ref|YP_002972037.1| hypothetical protein Bgr_10900 [Bartonella grahamii as4aup]
 gi|240267760|gb|ACS51348.1| hypothetical protein Bgr_10900 [Bartonella grahamii as4aup]
          Length = 437

 Score =  164 bits (415), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 135/460 (29%), Positives = 214/460 (46%), Gaps = 43/460 (9%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + P+  FV S GC   + DS R+     S+GYE       AD++++NTC   + A  +  
Sbjct: 2   VAPRISFV-SLGCPKALVDSERIITRLRSEGYEISRQHQGADVVIVNTCGFLDSARRE-- 58

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
                + N+  +  K G    V+V GC+  A+ + I +  P V  +  PQ Y  + E + 
Sbjct: 59  ----SLANIDEALKKNGK---VIVTGCLG-ADPDVIRQTYPNVLAITKPQAYESVIEAVH 110

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
            A            V D F  L    G     R   A+L I EGC   C+FC++P  RG 
Sbjct: 111 TA---------IPPVHDPFLDLVPPQGIRLTPRHY-AYLKISEGCSNQCSFCIIPTLRGD 160

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNV-----------NAWRGKGLDGEKCTFSDL 250
             SR +S V+ EA KL+  GV E+ ++ Q+            N+W+ + +   K  F DL
Sbjct: 161 LTSRPISDVLREAEKLVQAGVKELLVISQDTSAYGIDLKYLENSWKDRTI---KTKFFDL 217

Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
              L ++   +R+ Y   +P    D +I+      +L PYL +P Q  S  IL+ M R  
Sbjct: 218 CRELGDMGIWIRMHYVYPYPH--VDEVIELMAAKKIL-PYLDIPFQHASPAILRHMKRPA 274

Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370
              +  + I++ R + PD+ + S FIVGFPGET++DF   ++ +++    +A  FKY   
Sbjct: 275 LIEKTNRRIEKWRKICPDLTLRSTFIVGFPGETNEDFNILLEWLEEAKIERAGCFKYEEV 334

Query: 371 LGTPGSNM-LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGK-EKGK 427
            G   +++ LE + E VK  R      K ++         +G+ ++VLI E  GK  KG+
Sbjct: 335 KGAAANDLGLENIPEEVKENRWHRFMAKQQQISTHLLKKKIGKRLQVLIDESQGKVAKGR 394

Query: 428 LVGRSPWLQSVVLNSKNH--NIGDIIKVRITDVKISTLYG 465
               +P +  VV  S      +G+ + V+I       LYG
Sbjct: 395 SQYDAPEIDGVVHISSRRPLRVGEFVSVKIEQSDAYDLYG 434


>gi|58039893|ref|YP_191857.1| putative oxidoreductase [Gluconobacter oxydans 621H]
 gi|58002307|gb|AAW61201.1| Putative oxidoreductase [Gluconobacter oxydans 621H]
          Length = 400

 Score =  164 bits (415), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 129/453 (28%), Positives = 197/453 (43%), Gaps = 73/453 (16%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V ++GC++N ++S  M     ++G +        D I++NTC +   A  +    + R  
Sbjct: 5   VLTFGCRLNAHESDGM--AHHARGQD--------DTIIVNTCAVTTTAERQARQAIRRAH 54

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
                  +E  D  +VV GC +                 + P  +  LP ++       R
Sbjct: 55  -------RENPDAKIVVTGCASD----------------IAPDRWAGLPGVV-------R 84

Query: 149 VVDTDYSVEDKFERLSIVD--GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           VV      EDK +     D   G    R   A L +Q+GCD  CTFC++PY RG   S  
Sbjct: 85  VVPN----EDKLKPAIWGDTSAGLPPSRHARALLQVQQGCDHRCTFCIIPYGRGDSRSTP 140

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
           +   +  A  L++ G  EI L G ++ +W+G G  G      +LL     + G+ RLR +
Sbjct: 141 VEDAIARAEALVEAGHQEIVLTGVDIASWQGSGGKGLGALCRELLR---RVDGVRRLRLS 197

Query: 267 TSHPRDMSDCLIKAH-GDLDV---------LMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           +  P      L+ A  GD D+         LMP+LHL +Q+GSD ILK M RRH      
Sbjct: 198 SIDP-----VLLDAQTGDADLWWLLENEPRLMPHLHLSLQAGSDLILKRMKRRHDTAGVA 252

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
             + R+RS+RP+  + +D I GFP ET+  F  T   +++        F YS R GTP +
Sbjct: 253 ATLRRVRSIRPETGVGADLIAGFPTETNALFEETRAFIEEQQIPFLHVFPYSERPGTPAA 312

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQ 436
            M   V    + +R  CL+      +  F    +G   ++L E   +      G SP   
Sbjct: 313 RM-PAVPNAERQKRAACLRDIGEANRDRFLQRLIGTEFDILAETPDR------GHSPEFA 365

Query: 437 SVVLNSKNHNI--GDIIKVRITDVKISTLYGEL 467
           +V L         G  + VR T ++  TL  E+
Sbjct: 366 AVRLTGTAPAPVRGSFVPVRATGLENGTLLAEI 398


>gi|167581733|ref|ZP_02374607.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Burkholderia
           thailandensis TXDOH]
          Length = 463

 Score =  164 bits (415), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 128/465 (27%), Positives = 214/465 (46%), Gaps = 50/465 (10%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC   + DS ++     ++GYE   + D ADL+V+NTC   ++A ++    +G     
Sbjct: 21  SLGCPKALVDSEQIITQLRAEGYEISGTYDGADLVVVNTCGFIDEAVQESLDAIGEA--- 77

Query: 91  KNSRIKEGGDLLVVVAGCVA---QAEGEEILRR-SPIVNVVVGPQTYYRLPELLERARFG 146
               + E G   V+V GC+     A G  ++    P V  V GP     + +++  +   
Sbjct: 78  ----LAENGK--VIVTGCLGAKKSASGSGLIEEVHPKVLAVTGPHAVGEVMQVV-HSHLP 130

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           K          D F  L +   G        A+L I EGC+  C+FC++P  RG  +SR 
Sbjct: 131 KP--------HDPFVDL-VPAAGIKLTPRHYAYLKISEGCNHRCSFCIIPSMRGDLVSRP 181

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYSLS 255
           +++V+ EA  L   GV E+ ++ Q+ +A           W G+ L   K   ++L+ +L 
Sbjct: 182 VAEVMLEAENLFKAGVKELLVISQDTSAYGVDVKYRTGFWNGRPL---KTRMTELVGALG 238

Query: 256 EIKG----LVRLRYTTSHPRDMSDCLIKAHGDL-DVLMPYLHLPVQSGSDRILKSMNRRH 310
           E+       VRL Y   +P       + A G L D ++PYL +P Q     +LK M R  
Sbjct: 239 ELAAQYGAWVRLHYVYPYPHVDEIIPMMAQGPLKDHVLPYLDVPFQHAHPDVLKRMKRPA 298

Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370
            A +  + + + R + PD+ I S FI GFPGET+  F   +D + +    +   F YSP 
Sbjct: 299 NAEKVLERVQKWREICPDLTIRSTFIAGFPGETEAQFETLLDFIREAELDRVGCFAYSPV 358

Query: 371 LGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKL 428
            G   + +   + ++V+  R     +   E   +  +  VG+ ++VLI++  +E   G+ 
Sbjct: 359 EGASANELDGALPDDVREARRARFMEVAEEVSAARIERKVGKTLKVLIDEVNEEGGIGRT 418

Query: 429 VGRSPWLQSVVL------NSKNHNIGDIIKVRITDVKISTLYGEL 467
              +P +  VV        SK + +GD + V+IT      L+GE+
Sbjct: 419 AADAPEIDGVVYVEPAAKASKRYKVGDFVSVKITGADGHDLWGEV 463


>gi|46446860|ref|YP_008225.1| hypothetical protein pc1226 [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|81626909|sp|Q6MBU9|RIMO_PARUW RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|46400501|emb|CAF23950.1| conserved hypothetical protein [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 475

 Score =  164 bits (415), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 121/451 (26%), Positives = 215/451 (47%), Gaps = 30/451 (6%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ DS  M  +    GYE   ++++AD +V+NTC   E + ++    +  + + 
Sbjct: 42  SLGCPRNLVDSEVMLGILLKAGYEVAPTLEEADYLVINTCGFLEASRQESMDTVEEVLSQ 101

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
           +    K      ++V GC+ Q   + +    P ++ ++G      + + ++  + G+ + 
Sbjct: 102 RKKTAK------LIVTGCMVQTHSDALKTTFPSIDYLLGSGDVEGILKAVQSTQKGQIIS 155

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVT----AFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
                        S ++ G   +R  T    A+L I EGC K C +CV+P  +G   S+ 
Sbjct: 156 SAR----------SYLEAGEVPRRLSTPKHYAYLKIAEGCRKRCAYCVIPTIKGPLKSKG 205

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT-FSDLLYSLSEIKGLVRLRY 265
             Q++ E   L+  GV E+ L+ Q++  + GK    +K T   +LL S+ EIK    LR 
Sbjct: 206 KEQILKEFNLLLSQGVKEVILIAQDLGDY-GKDQGAKKLTALLNLLQSMLEIKQAFWLRL 264

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
              +P +++D LI        + PYL +P+Q  +++ILKSM R  +  +  +II ++R  
Sbjct: 265 LYLYPDEITDELIALMKSDSRICPYLDMPIQHVNNQILKSMRRATSKEDIIEIITKLRRE 324

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P++AI +  IVGFPGET++ F+  +  V          FK+S   G+   ++  Q+ + 
Sbjct: 325 IPNVAIRTSLIVGFPGETEEQFQELIQFVQDYPLENVGIFKFSREPGSHAYDLPNQISDE 384

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-----GKLVGRSPWLQSVVL 440
           +K +R   L +  ++         +G+ I V++E +  E      G+  G+ P +   VL
Sbjct: 385 MKEDRYHRLMQVQKKVVKKNLKKMIGKKIAVVVEGYHPETELLMIGRHTGQCPDIDGQVL 444

Query: 441 ---NSKNHNIGDIIKVRITDVKISTLYGELV 468
                K    G+I  V ITDV    L G ++
Sbjct: 445 INDGRKVKAFGEIYTVEITDVADYDLVGHVI 475


>gi|257463539|ref|ZP_05627932.1| MiaB-like tRNA modifying enzyme YliG [Fusobacterium sp. D12]
 gi|317061094|ref|ZP_07925579.1| 2-methylthioadenine synthetase [Fusobacterium sp. D12]
 gi|313686770|gb|EFS23605.1| 2-methylthioadenine synthetase [Fusobacterium sp. D12]
          Length = 444

 Score =  164 bits (415), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 128/442 (28%), Positives = 223/442 (50%), Gaps = 34/442 (7%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           F   S GC  N+ DS  +  +  + +G++  N +++AD++++NTC     A ++    + 
Sbjct: 3   FAFISLGCSKNLVDSENLTGILVNRKGFQLTNDIEEADMVLINTCGFIGDAKKESIETIL 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +   K   +K+     +VV GC+AQ   EE+L+  P ++ V+G     ++  +++    
Sbjct: 63  EVAEYKQQNLKK-----IVVCGCLAQRYAEELLQEIPEIDAVIGTGEIDKIERVVDEILQ 117

Query: 146 GKRVVDT---DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            K+VV+T   D+      +RL             TA+L I EGC++ CT+C++P  RG  
Sbjct: 118 DKKVVETKSFDFLPNADTDRLLTTPPH-------TAYLKISEGCNRRCTYCIIPQLRGNL 170

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD--GEKCTFSDLLYSLSEIKGL 260
            SRS   +++EAR L+  GV E+ LL Q    +   G+D  G+K    DLL  L +I+ L
Sbjct: 171 RSRSKEDILEEARHLVAGGVRELNLLAQETTEY---GIDRYGKKA-LPDLLRELVKIEEL 226

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
             +R     P+ ++D LI      + +  Y  +P+Q  S  +L+ M R  T  + ++++ 
Sbjct: 227 DWIRSYYMFPKSITDELIAVMKTEEKICKYFDIPIQHISSNVLRRMGRAITGEQTKELLY 286

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           +IR   P+    +  IVGFPGET+++F      V++  +     F+YS    T    M  
Sbjct: 287 KIRREIPEAVFRTSLIVGFPGETEEEFEELKSFVEEFQFDYIGVFQYSREEDTLAYTMEA 346

Query: 381 QVDENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-----KGKLVGRS 432
           QV E +KA R   L+ LQ ++ E +   N   +G+ +EVLI+    E     +G+L  ++
Sbjct: 347 QVPEEIKARRQAELINLQNEIAEAK---NRKLLGREVEVLIDGISSESEYMLEGRLKTQA 403

Query: 433 PWLQSVVLNSK-NHNIGDIIKV 453
             +   VL S+    +G+I+ V
Sbjct: 404 LDIDGKVLTSEGTAQVGEIVHV 425


>gi|103486211|ref|YP_615772.1| hypothetical protein Sala_0718 [Sphingopyxis alaskensis RB2256]
 gi|123078538|sp|Q1GV83|RIMO_SPHAL RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|98976288|gb|ABF52439.1| conserved hypothetical protein [Sphingopyxis alaskensis RB2256]
          Length = 455

 Score =  164 bits (415), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 131/466 (28%), Positives = 212/466 (45%), Gaps = 60/466 (12%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC   + DS R+     + GY        AD++++NTC   + A E+    +G     
Sbjct: 16  SLGCPKALVDSERILTKLRADGYGLSPDYAGADVVLVNTCGFLDSAKEESLEAIGEAMA- 74

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
           +N R        V+V GC+ + E + I  R P V  V G   Y ++ E          V 
Sbjct: 75  ENGR--------VIVTGCMGK-EADVIRARFPNVLAVTGAHQYEQVVEA---------VH 116

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
           D     +  F  L + +GG        ++L I EGC+  C FC++P  RG  +SR +  V
Sbjct: 117 DAAPPTQGPFVDL-VPEGGLKLTPRHYSYLKISEGCNHSCAFCIIPDLRGKLVSRRIDAV 175

Query: 211 VDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYSLSEIK- 258
           + EA KL+  G  E+ ++ Q+ +A           W G+ +   +   +DL   L +++ 
Sbjct: 176 LREAEKLVAAGTKELLVISQDTSAYGVDIRHDPRQWHGREI---RAHMTDLARELGQLRT 232

Query: 259 -----GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
                  VRL Y   +P   +   + A G   +L PYL +P Q  S  +LK M R     
Sbjct: 233 SEGRAPWVRLHYVYPYPHVDAVIPLMAEG---LLTPYLDIPFQHASPSVLKRMKRPANEA 289

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
           +  + +   R++ PDIAI S F+VGFPGET+ DF+  +D +++    +  +F++ P  G 
Sbjct: 290 KVLERLKSWRAIAPDIAIRSSFVVGFPGETEADFQYLLDWLEEAQLDRVGAFRFEPVAGA 349

Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK--EKGKL--V 429
             + + E V + VK ER   +  K      +  +A +G+ + V+I++ G+  E G +   
Sbjct: 350 QANALPEPVPDEVKEERYQRIMAKTAAISAAKLEAKIGRTLPVIIDEVGEADEDGSIGAT 409

Query: 430 GRSP----------WLQSVVLNSKNHNIGDIIKVRITDVKISTLYG 465
           GRS           +L+ V    K    GDI+ V I D     L+G
Sbjct: 410 GRSQADAPEIDGHVYLRDVAATLKA---GDIVDVEIEDADEHDLFG 452


>gi|302348200|ref|YP_003815838.1| hypothetical protein ASAC_0400 [Acidilobus saccharovorans 345-15]
 gi|302328612|gb|ADL18807.1| hypothetical protein ASAC_0400 [Acidilobus saccharovorans 345-15]
          Length = 437

 Score =  164 bits (415), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 132/448 (29%), Positives = 219/448 (48%), Gaps = 26/448 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           ++++++YGC ++ +DS  M  +    GYE      +AD+I++NTC +R     K+   + 
Sbjct: 10  KYYIETYGCALSEFDSEIMRSILRGAGYEECKDPREADVIIVNTCAVRLDTEAKI---VK 66

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R++ L N    +G  L  VV+GC+++A    ILR +P  ++V  PQ   R+   L+    
Sbjct: 67  RLKEL-NGLSLQGKKL--VVSGCLSKARPSLILRTAPAASLV-SPQNVTRI---LDAVTL 119

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            + +   D   +  F             R   A + I EGC + C+FC     R    S 
Sbjct: 120 DRPIYMLDGERDVNFLPKPPT-------RDSVATVMISEGCLENCSFCETKLARRYLKSY 172

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS-LSEIKGLVRLR 264
               +V   R L+  G  EI L GQ+  A+ G  L G K    DL+   L ++ G  RLR
Sbjct: 173 PPRAIVSIVRDLVQGGAREIRLTGQDAAAY-GVDLPG-KPRLPDLIADILDKVPGEYRLR 230

Query: 265 ---YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
               T +   ++ D L+  + D  V   + H+PVQSG DR+LK MNRR+T  E++++  +
Sbjct: 231 IGMMTPNQAMEIIDDLLDVYRDGRVFK-FFHIPVQSGDDRVLKIMNRRYTVAEFKELHSK 289

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +++  P    ++D IVG PGE +  F  ++ LV+++ + + +  +YS R  T  ++M  Q
Sbjct: 290 VKAKYPSSLFATDIIVGHPGEDEGAFMNSVRLVEELKFERVYLAQYSIRPRTASASM-PQ 348

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLVGRSPWLQSVVL 440
           V E VK ER L +Q+ +++  V    + VG     L+   G  +G   V    +    V 
Sbjct: 349 VPEPVKKERSLRIQEVIKKIGVEIYGSYVGGRFRGLLASRGFREGFSTVRLDNYFPVAVP 408

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
            S   + G+ + V+IT      L G +V
Sbjct: 409 ASTLRSYGEFVDVKITGATYFDLRGVIV 436


>gi|320166116|gb|EFW43015.1| HSPC167 [Capsaspora owczarzaki ATCC 30864]
          Length = 712

 Score =  164 bits (415), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 85/212 (40%), Positives = 132/212 (62%), Gaps = 3/212 (1%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F ++YGCQMNV D+  +  +    G+ER   +  AD+I+L TC IR+ A  KV+S L
Sbjct: 163 RKVFFETYGCQMNVNDTEIVWSILQGVGFERTLDVKQADVILLMTCAIRDNAERKVWSRL 222

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             +++++  R K+     V V GC+A+    ++L +  +V+VV GP +Y  LP LL  A 
Sbjct: 223 NELKHMRLKRTKDQPISRVGVLGCMAERLKTQLLEKDQLVDVVAGPDSYRDLPRLLSIAN 282

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G + V+   S+++ +  ++ V      K  VTAF++I  GCD  C+FC+VP+TRG E S
Sbjct: 283 QGDQAVNVQLSLDETYADIAPV---RMSKDSVTAFVSIMRGCDNMCSFCIVPFTRGRERS 339

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWR 236
           R L+ +V+E R+L   GV E+TLLGQNVN++R
Sbjct: 340 RPLASIVEEVRQLARQGVREVTLLGQNVNSYR 371



 Score =  111 bits (278), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 63/188 (33%), Positives = 105/188 (55%), Gaps = 2/188 (1%)

Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306
           F++LL  ++ +   +R+R+T+ HP+D  D ++        +   LH+P QSGS  +L+ M
Sbjct: 435 FAELLRQVAAVDPEMRIRFTSPHPKDFPDDVLTVIASTANVCKSLHMPAQSGSTSVLERM 494

Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
            R ++   Y +++ R+R + PD+ +SSDFI GF GET+ DF+ T+DL++K GY   + F 
Sbjct: 495 RRGYSRESYLELVARVRRLIPDVTLSSDFIAGFCGETEADFKDTLDLIEKAGYEYGYLFG 554

Query: 367 YSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE- 424
           YS R  T     +++ V  +VK +RL  +      +        VG    VL+E+  +  
Sbjct: 555 YSMREKTHAHRKLVDDVPADVKNQRLKEMIASFYARSEQSLSRFVGSRQLVLVERPSRRA 614

Query: 425 KGKLVGRS 432
           K +L GRS
Sbjct: 615 KDQLTGRS 622


>gi|323526085|ref|YP_004228238.1| MiaB-like tRNA modifying enzyme YliG [Burkholderia sp. CCGE1001]
 gi|323383087|gb|ADX55178.1| MiaB-like tRNA modifying enzyme YliG [Burkholderia sp. CCGE1001]
          Length = 461

 Score =  164 bits (415), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 132/473 (27%), Positives = 217/473 (45%), Gaps = 56/473 (11%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R  + S GC   + DS ++     ++GYE   + D ADL+V+NTC   ++A ++    +G
Sbjct: 14  RIGIVSLGCPKALVDSEQIITQLRAEGYEISGTYDGADLVVVNTCGFIDEAVQESLDAIG 73

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVA---QAEGEEILRR-SPIVNVVVGPQTYYRLPELLE 141
              N +N +        V+V GC+     A G  ++    P V  V GP   + + E+++
Sbjct: 74  EALN-ENGK--------VIVTGCLGAKKSASGSGLIEEVHPKVLAVTGP---HAVGEVMQ 121

Query: 142 RARFGKRVVDTDYS-VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
                   V T      D F  L    G     R   A+L I EGC+  CTFC++P  RG
Sbjct: 122 H-------VHTHLPKPHDPFVDLVPAAGVKLTPRHY-AYLKISEGCNHRCTFCIIPSMRG 173

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSD 249
             +SR +++V+ EA  L  +GV E+ ++ Q+ +A           W GK +   K   +D
Sbjct: 174 DLVSRPVAEVMLEAENLFKSGVKELLVISQDTSAYGVDVKYRTGFWNGKPI---KTRMTD 230

Query: 250 LLYSLSEIKG----LVRLRYTTSHPR-DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304
           L+ +L E+       VRL Y   +P  D    ++ A      ++PYL +P Q     +LK
Sbjct: 231 LVGALGELAAQYGAWVRLHYVYPYPSVDEVIPMMAAGPYKGHVLPYLDVPFQHAHPEVLK 290

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
            M R   A +  + +   R + PD+ I S FI GFPGET++ F   +D + +    +   
Sbjct: 291 RMKRPANAEKVMERVKAWRDMCPDLTIRSTFIAGFPGETEEQFETLLDFIREAELDRVGC 350

Query: 365 FKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE 424
           F YSP  G   + +   + + V+ ER     +   E         VG+ ++VL+++   +
Sbjct: 351 FAYSPVEGASANELDGALPDEVREERRARFMEVAEEVSAKRIAKKVGKTLKVLVDEVNAD 410

Query: 425 KGKLVGRSP----------WLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
            G  VGR+           ++   V  SK + +GD + V+IT      L+GE+
Sbjct: 411 GG--VGRTAADAPEIDGVVYIAPAVKASKRYKVGDFVSVKITGADGHDLWGEV 461


>gi|119356260|ref|YP_910904.1| RNA modification protein [Chlorobium phaeobacteroides DSM 266]
 gi|119353609|gb|ABL64480.1| RNA modification enzyme, MiaB family [Chlorobium phaeobacteroides
           DSM 266]
          Length = 446

 Score =  164 bits (415), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 113/366 (30%), Positives = 183/366 (50%), Gaps = 43/366 (11%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRI-RN 89
           + GC++N  +S  + D+   +G+E  +   + DLI++NTC + ++A +K    + +I R+
Sbjct: 8   TLGCKLNYAESSAILDLLSKKGWEISSYEKNEDLIIINTCAVTKQAEQKCRQKIRKIIRD 67

Query: 90  LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLP------------ 137
              SRI        VV GC AQ    E+L +   VN ++G    Y LP            
Sbjct: 68  NPGSRI--------VVTGCYAQLS-PEVLCKIDGVNAILGSSDKYALPLYEVIGNIESSL 118

Query: 138 ELLERARFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
            L+  +   K + +   YS+   F           R R   AFL IQ+GCD  C +C +P
Sbjct: 119 PLISVSEIKKEKTIFPGYSLPATF--------ASERTR---AFLKIQDGCDYGCAYCTIP 167

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256
           + RG   S S   ++ +A  L+ +G  EI L G N+  +R +G+       + LL  L +
Sbjct: 168 FARGRSRSFSPDDIIAQASALVASGYREIVLTGVNIGDYRYRGV-----RLAALLRMLEK 222

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           +  + R+R ++  P  + D LI      +++ P+ HLP+QSGSD +L++M RR+    YR
Sbjct: 223 VP-VARIRISSIEPDILDDALIAVVAASEIIAPHFHLPLQSGSDAVLRAMCRRYDTAGYR 281

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
           Q I R      D ++SSD +VG+PGE+ DD+R     ++ +  +    F  S R   PG+
Sbjct: 282 QRILRAVEAIADCSVSSDVMVGYPGESADDYRNMYRFLEGLPISSLHVFSCSVR---PGT 338

Query: 377 NMLEQV 382
            + EQV
Sbjct: 339 QLAEQV 344


>gi|94310303|ref|YP_583513.1| hypothetical protein Rmet_1361 [Cupriavidus metallidurans CH34]
 gi|122987974|sp|Q1LNN2|RIMO_RALME RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|93354155|gb|ABF08244.1| conserved hypothetical protein [Cupriavidus metallidurans CH34]
          Length = 456

 Score =  164 bits (415), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 135/478 (28%), Positives = 220/478 (46%), Gaps = 64/478 (13%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P +    S GC   + DS ++     ++GY    + D ADL+V+NTC   ++A ++    
Sbjct: 10  PPKVGFVSLGCPKALVDSEQIITQLRAEGYSISGTYDGADLVVVNTCGFIDEAVQESLDA 69

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQ---AEGEEILRR-SPIVNVVVGPQTYYRLPEL 139
           +G         + E G   V+V GC+     A G +I+    P V  V GP   + L E+
Sbjct: 70  IGEA-------LTENGK--VIVTGCLGAKKDAAGHDIVSAVHPKVLAVTGP---HALGEV 117

Query: 140 LERARFGKRVVDTDYS-VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
           ++        V T      D F  L +   G        A+L I EGC+  C+FC++P  
Sbjct: 118 MQ-------AVHTHLPKPHDPFTDL-VPAAGIKLTPKHYAYLKISEGCNHRCSFCIIPSM 169

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTF 247
           RG  +SR +++V+ EA  L   GV E+ ++ Q+ +A           W G+ L   K   
Sbjct: 170 RGDLVSRPVAEVMLEAENLFKAGVKELLVISQDTSAYGVDVKYRTGFWNGRPL---KTRM 226

Query: 248 SDLLYSLSEIK----GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
           ++L+ +L E+       VRL Y   +P    D +I      +VL PYL +P+Q     +L
Sbjct: 227 TELVAALGELASQYGAWVRLHYVYPYPH--VDEIIPLMNQGNVL-PYLDVPLQHAHPDVL 283

Query: 304 KSMNRRHTAYEYRQIIDRIRSVR---PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
           K M R   A    + +DRIR+ R   PD+ I S FI GFPGET+++F+  +D + +    
Sbjct: 284 KRMKRPANA---EKTLDRIRAWREVCPDLTIRSTFIAGFPGETEEEFQTLLDFIAEAELD 340

Query: 361 QAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
           +   F YSP  G   +++   + + V+ ER     +   E         VGQ + VL+++
Sbjct: 341 RVGCFAYSPVEGATANDLPGALPDEVREERRARFMEVAEEVSARRLQRKVGQTLRVLVDE 400

Query: 421 HGKEKGKLVGRSP----------WLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
             ++ G  +GRS           ++      S+ +  GD + V+IT      L+GE+ 
Sbjct: 401 VNQDGG--IGRSSADAPEIDGLVYIDPAAKASQRYKTGDFVNVKITGADGHDLWGEVA 456


>gi|119383150|ref|YP_914206.1| MiaB-like tRNA modifying enzyme [Paracoccus denitrificans PD1222]
 gi|119372917|gb|ABL68510.1| MiaB-like tRNA modifying enzyme [Paracoccus denitrificans PD1222]
          Length = 420

 Score =  164 bits (415), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 127/433 (29%), Positives = 202/433 (46%), Gaps = 39/433 (9%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  M +M  + G +          +++NTC +  +A  K    + R+   
Sbjct: 11  TLGCRLNAYETEAMREMAEAAGLQ--------GAVIVNTCAVTAEAVRKARQEIRRL--- 59

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVV-----VGPQTYYRL--PELLERA 143
                +E     V+V GC AQ E E     + +  V+     + P T+  +  P+L+   
Sbjct: 60  ----ARENPGAPVIVTGCAAQTEPETFAAMAEVSRVIGNHEKMQPATWAAMQAPDLIGET 115

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
              K  VD   SV++    L  +DG + R R   A++ +Q GCD  CTFC++PY RG   
Sbjct: 116 E--KVQVDDIMSVKETAGHL--IDG-FGRHR---AYVQVQNGCDHRCTFCIIPYGRGNSR 167

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           S     VVD+ ++L D G  E+ L G ++ +W G  L G+      ++  L  +  L RL
Sbjct: 168 SVPAGVVVDQIKRLRDRGFNEVVLTGVDLTSW-GADLPGQPRLGDLVMRILRLVPDLPRL 226

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R ++    +  + L+ A      LMP+LHL +Q+G D ILK M RRH   +  +  +  R
Sbjct: 227 RISSIDSIEADENLMLAIATEPRLMPHLHLSLQAGDDMILKRMKRRHLRDDAIRFCEEAR 286

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
            +RP IA  +D I GFP ET+  F  ++ LV+  G      F YS R GTP + M     
Sbjct: 287 RLRPGIAFGADIIAGFPTETEAMFENSLKLVEDCGLTFLHVFPYSARKGTPAARMPRVPG 346

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
             +K ER   L+            A +G+   VL E      G  +GR+     V  + +
Sbjct: 347 PAIK-ERAARLRAAGDAALARHLQAQLGEARMVLTE------GPRLGRTEHFTEVAFD-R 398

Query: 444 NHNIGDIIKVRIT 456
           +   G ++ +RI 
Sbjct: 399 DMPEGTLMALRIA 411


>gi|332992975|gb|AEF03030.1| MiaB-like tRNA modifying enzyme YliG [Alteromonas sp. SN2]
          Length = 480

 Score =  164 bits (415), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 129/410 (31%), Positives = 198/410 (48%), Gaps = 32/410 (7%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ DS R+     ++GY+ V + +DADL+++NTC   + A E+    +G     
Sbjct: 43  SLGCPKNLVDSERILTQLRTEGYDVVPTYNDADLVIVNTCGFIDAAVEESLDTIGEA--- 99

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               +KE G   V+V GC+   E +EI    P V  + GP  Y  + E +       +  
Sbjct: 100 ----LKENGK--VIVTGCLGIKE-DEIREVHPNVLAITGPHAYESVVEQVHEHLPKPQ-- 150

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
                  + FE L + D G        A+L I EGC+  CTFC++P  RG  +SR +  V
Sbjct: 151 ------HNPFEHL-VPDHGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGDLVSRPVGSV 203

Query: 211 VDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYSLSEIKGLVR 262
           +DEA++L   GV E+ ++ Q+ +A+      R    DG   K     L   L E+   VR
Sbjct: 204 LDEAKRLKSAGVKELLVISQDTSAYGVDVKHRTGFWDGMPVKTHMQQLCEKLGEMGIWVR 263

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           L Y   +P    D LI    +  +L PYL +P Q  + RIL+ M R  +A    + + + 
Sbjct: 264 LHYVYPYPH--VDDLIPLMNEGKIL-PYLDIPFQHANKRILRLMKRPGSADRTLERVKKW 320

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R   P + I S FIVGFPGET+++F   +D + +    +  +F YSP  G   +++ + V
Sbjct: 321 REACPSLVIRSTFIVGFPGETEEEFEELLDFIREAQLDRVGAFAYSPVEGARANDLPDPV 380

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS 432
            E+VK ERL    +   E       A +G   +V+I+    E    VGR+
Sbjct: 381 PEDVKQERLARFMEVQGEISAQRLQARIGNEYQVVIDSVDSEGA--VGRT 428


>gi|167772333|ref|ZP_02444386.1| hypothetical protein ANACOL_03710 [Anaerotruncus colihominis DSM
           17241]
 gi|167665436|gb|EDS09566.1| hypothetical protein ANACOL_03710 [Anaerotruncus colihominis DSM
           17241]
          Length = 441

 Score =  164 bits (414), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 127/441 (28%), Positives = 205/441 (46%), Gaps = 22/441 (4%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  +   F   GYE V     AD+ V+N+C +     +K    L R R L
Sbjct: 7   TLGCKVNQYEAQILAQQFADAGYEIVPPEAPADVYVVNSCTVTASGDQKTRRVLRRFRTL 66

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR--FGKR 148
                    D  VV+ GC  QA  ++  R +   +V+ G +    L EL+ RAR   G+ 
Sbjct: 67  CP-------DATVVLTGCYPQAFPDDAARLAE-ADVIAGARDRAALVELVRRARETRGRI 118

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           V    +   + FE +        R+R   AF+ I++GCD++C +C++P  RG   S+   
Sbjct: 119 VAVAPHERGEPFEPMR---AAAFRER-TRAFVKIEDGCDRYCAYCIIPQARGPVRSKPPG 174

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAW-RGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
           ++  E   L   G  E  L+G N+ ++ R  GL        D +     + G+ R+R  +
Sbjct: 175 ELRAELEGLARAGYREAVLVGINLPSYGRELGL-----RLIDAVELACAVGGIERVRLGS 229

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
             P  ++D  I        L P  HL +QSG D  L  M R +   EY +I+  +R+   
Sbjct: 230 LEPELLTDDDIARMARQPKLCPQFHLSLQSGCDATLARMRRHYDTAEYMRIVRALRAHFE 289

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
           + AI++D +VGFPGETD +F  ++  V+ +G A+A  F YS R GT  ++M  Q+   VK
Sbjct: 290 NCAITTDVMVGFPGETDAEFGQSLCFVESLGLAKAHVFAYSRRPGTRAADMPGQLPGAVK 349

Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNI 447
             R   + +     + +F     G+ + VL E   ++ G   G +     V + +     
Sbjct: 350 EARSARMIEATDRTRAAFLAGQAGRTVGVLFET--RDGGAFDGYAENYTPVRVFTDEDLR 407

Query: 448 GDIIKVRITDVKISTLYGELV 468
           G I +V IT    +   G L 
Sbjct: 408 GQIRRVLITSADGARCVGTLA 428


>gi|296532248|ref|ZP_06894992.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Roseomonas cervicalis
           ATCC 49957]
 gi|296267418|gb|EFH13299.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Roseomonas cervicalis
           ATCC 49957]
          Length = 451

 Score =  164 bits (414), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 119/392 (30%), Positives = 185/392 (47%), Gaps = 25/392 (6%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V S+GC++N Y+S  M  +    G+         D +++NTC +  +A  +    + R  
Sbjct: 38  VLSFGCRLNTYESTAMRALALRAGHR--------DAVLVNTCAVTAEAERQARKAIRRAH 89

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
                  +E   + ++V GC AQ   E      P V  V+G     + PE          
Sbjct: 90  -------REQPGVPILVTGCAAQISPESWAA-LPGVARVIGNADKLK-PEAWAPEASPAP 140

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           V D   + E     ++   G   R R   AF+ +Q+GCD  CTFCV+PY RG   S  + 
Sbjct: 141 VTDIMAATETAAHLVTDFAG---RAR---AFVQVQQGCDHRCTFCVIPYGRGPSRSVPMG 194

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
            VV++AR L+  G  E+ L G ++ ++ G  L G           L+ +  L RLR ++ 
Sbjct: 195 AVVEQARALVARGYNELVLTGVDITSY-GPDLPGRPTLGQLARRLLALLPELQRLRLSSL 253

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
            P ++ + L +       LMP+LHL +Q G D +LK M RRH+  +      R R +RP 
Sbjct: 254 DPVEIDEDLWRLIAGEPRLMPHLHLSLQHGDDVMLKRMKRRHSRADALACARRARDLRPG 313

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           IA  +D I GFP ET+  F   ++LV++ G      F YS R GTP + M  Q+   ++ 
Sbjct: 314 IAFGADLIAGFPTETEAHFTRMLELVEEAGLHFLHVFPYSERPGTPAARM-PQLPVPLRR 372

Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
           ER   L++        F ++ +GQ   VL+E+
Sbjct: 373 ERATRLREAGAAAARRFYESRLGQEETVLLER 404


>gi|58696768|ref|ZP_00372305.1| MiaB-like tRNA modifying enzyme [Wolbachia endosymbiont of
           Drosophila simulans]
 gi|58537042|gb|EAL60178.1| MiaB-like tRNA modifying enzyme [Wolbachia endosymbiont of
           Drosophila simulans]
          Length = 375

 Score =  164 bits (414), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 121/401 (30%), Positives = 204/401 (50%), Gaps = 28/401 (6%)

Query: 67  LNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNV 126
           +++C +  +A  +V   + +I   KN   KE     ++V GC  Q +  E+    P V+ 
Sbjct: 1   MHSCAVTNEAERQVKQKIRKI--YKNDPNKE-----IIVVGCAVQLD-PEVYSSIPGVSK 52

Query: 127 VVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGC 186
           V+G Q   +    L       +++ +D  VE       +++G  ++ R   AF+ IQ GC
Sbjct: 53  VLGNQDKLKAENYLLN---DDKILVSDNQVEP-----VLINGFEDKSR---AFIEIQNGC 101

Query: 187 DKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT 246
           +  CTFC +   RG   S  ++ ++++ R  ++NG  E+   G ++  + G  L G+   
Sbjct: 102 NHSCTFCSITEARGNNRSVPINSIIEQIRIFVENGYQEVVFTGVDITDF-GTDLLGKPSL 160

Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306
            S +   L +I  L RLR ++    ++ D L+    +   LMP+LHL +QSG++ ILK M
Sbjct: 161 GSMIRRVLKDIPELKRLRLSSIDVAEVDDELMDLIANESRLMPHLHLSLQSGNNLILKRM 220

Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
            RRH   +  +   +++S+RP+IA  +D I GFP ETD+ F+ T+DL+ K       +F 
Sbjct: 221 KRRHNREQVIEFCHKMKSLRPNIAFGADIIAGFPTETDEMFQDTVDLLKKTNIVYLHAFP 280

Query: 367 YSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG 426
           YS R  TP + M  QV ENV+ ER+  L++  +E   SF  + +     VL+E++     
Sbjct: 281 YSERKNTPAARM-PQVPENVRKERVKNLREVNKEIMSSFCQSLINTKQSVLVEQNN---- 335

Query: 427 KLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
             VGR+     + L SK      I+KV +  V+ + L G +
Sbjct: 336 --VGRAENFALIKLESKAQ-AKSIVKVNVKGVENNYLIGNI 373


>gi|328907267|gb|EGG27033.1| ribosomal protein S12 methylthiotransferase RimO [Propionibacterium
           sp. P08]
          Length = 481

 Score =  164 bits (414), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 138/466 (29%), Positives = 210/466 (45%), Gaps = 58/466 (12%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N  DS  +     + G++ V+   +A+ IV+NTC   E+A +     L    +L
Sbjct: 14  SMGCARNDVDSEELAARMEAGGFQLVDDPAEAETIVVNTCGFIEQAKKDSVDTLLAAADL 73

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTY----YRLPELLERARFG 146
           K +    G    VV  GC+A+  G E+    P  N V+G   Y     RL  +L+     
Sbjct: 74  KGN----GTTTSVVAVGCMAERYGRELAESLPEANAVLGFDDYDDIAGRLRTILDGGSIE 129

Query: 147 KRV-----------------------VDTDYSVEDKFERLSIVDGGYNRKR----GVTAF 179
            RV                       V    +  D    ++   G    +R    G +A 
Sbjct: 130 ARVPRDRRALLPISPVDRPTVRAGVSVPGHGTAPDLQASVAPAAGPRATRRRLETGPSAP 189

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
           L +  GCD+ C FC +P  RG  +SR  +++V+EAR L+D+GV E+ L+ +N +++ GK 
Sbjct: 190 LKMASGCDRRCAFCAIPRFRGSYLSRPTTEIVEEARWLVDHGVKEVFLVSENSSSY-GKD 248

Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
           L G+      LL +L ++ GL  +R +   P ++   LI      + ++PY  L  Q  S
Sbjct: 249 L-GDLRLLEKLLVNLDQVDGLEWIRVSYLQPAELRPGLIDTMLATNKVVPYFDLSFQHAS 307

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
             +L+ M R   A  +  IID IRS  PD    S+FI+GFPGETD D     D + +   
Sbjct: 308 GPLLRRMRRFGDAESFLNIIDSIRSRCPDAGFRSNFIIGFPGETDADIAVLTDFLQRARL 367

Query: 360 AQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419
             A  F YS   GT G+ +   VDE++   R        RE      D  V Q  E  I 
Sbjct: 368 DAAGIFAYSDEEGTEGAKLDRHVDEDLIGAR--------REVLADLTDELVSQRAEDRIG 419

Query: 420 KHGK------EKGKLVGRS----PWLQSVV--LNSKNHNIGDIIKV 453
             G+      ++G +VGR+    P +  VV  +++    +GDI+ V
Sbjct: 420 TRGRVMVEEIDEG-VVGRAEHQGPEVDGVVTLVDAPAVGVGDIVDV 464


>gi|313837176|gb|EFS74890.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes
           HL037PA2]
 gi|314927803|gb|EFS91634.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes
           HL044PA1]
 gi|314971948|gb|EFT16046.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes
           HL037PA3]
          Length = 474

 Score =  164 bits (414), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 138/466 (29%), Positives = 210/466 (45%), Gaps = 58/466 (12%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N  DS  +     + G++ V+   +A+ IV+NTC   E+A +     L    +L
Sbjct: 7   SMGCARNDVDSEELAARMEAGGFQLVDDPAEAETIVVNTCGFIEQAKKDSVDTLLAAADL 66

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTY----YRLPELLERARFG 146
           K +    G    VV  GC+A+  G E+    P  N V+G   Y     RL  +L+     
Sbjct: 67  KGN----GTTTSVVAVGCMAERYGRELAESLPEANAVLGFDDYDDIAGRLRTILDGGSIE 122

Query: 147 KRV-----------------------VDTDYSVEDKFERLSIVDGGYNRKR----GVTAF 179
            RV                       V    +  D    ++   G    +R    G +A 
Sbjct: 123 ARVPRDRRALLPISPVDRPTVRAGVSVPGHGTAPDLQASVAPAAGPRATRRRLETGPSAP 182

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
           L +  GCD+ C FC +P  RG  +SR  +++V+EAR L+D+GV E+ L+ +N +++ GK 
Sbjct: 183 LKMASGCDRRCAFCAIPRFRGSYLSRPTTEIVEEARWLVDHGVKEVFLVSENSSSY-GKD 241

Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
           L G+      LL +L ++ GL  +R +   P ++   LI      + ++PY  L  Q  S
Sbjct: 242 L-GDLRLLEKLLVNLDQVDGLEWIRVSYLQPAELRPGLIDTMLATNKVVPYFDLSFQHAS 300

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
             +L+ M R   A  +  IID IRS  PD    S+FI+GFPGETD D     D + +   
Sbjct: 301 GPLLRRMRRFGDAESFLNIIDSIRSRCPDAGFRSNFIIGFPGETDADIAVLTDFLQRARL 360

Query: 360 AQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419
             A  F YS   GT G+ +   VDE++   R        RE      D  V Q  E  I 
Sbjct: 361 DAAGIFAYSDEEGTEGAKLDRHVDEDLIGAR--------REVLADLTDELVSQRAEDRIG 412

Query: 420 KHGK------EKGKLVGRS----PWLQSVV--LNSKNHNIGDIIKV 453
             G+      ++G +VGR+    P +  VV  +++    +GDI+ V
Sbjct: 413 TRGRVMVEEIDEG-VVGRAEHQGPEVDGVVTLVDAPAVGVGDIVDV 457


>gi|307298742|ref|ZP_07578545.1| MiaB-like tRNA modifying enzyme [Thermotogales bacterium
           mesG1.Ag.4.2]
 gi|306915907|gb|EFN46291.1| MiaB-like tRNA modifying enzyme [Thermotogales bacterium
           mesG1.Ag.4.2]
          Length = 425

 Score =  164 bits (414), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 119/402 (29%), Positives = 203/402 (50%), Gaps = 28/402 (6%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + Q+  + ++GC+MN Y+S  M +M     YE   S D ADL ++N+C +  +A  K+  
Sbjct: 1   MKQKVSIYTFGCKMNQYESQAMAEML--HDYEVGFSQDKADLFIVNSCTVTSEAERKLRQ 58

Query: 83  FLGRIRNLK-NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
              R++ L  NS+I        ++ GC +Q    E+  R    + V+G +    + + + 
Sbjct: 59  LFRRLKGLNPNSKI--------IITGCYSQLSPNEL--RELGADEVIGVREKKAIHKYVS 108

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           R     ++   D     +F  L++      R R   AFL I++GC   C++C V   RG 
Sbjct: 109 R-----QLNRPDGVAPSEF--LTVTSSIEGRTR---AFLGIEDGCLNCCSYCRVRLARGS 158

Query: 202 EI-SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
           +I S+ +  V  E   L+  G  EI L G N+  + G  LD    +   LL  L +++G 
Sbjct: 159 KIISKPIDLVKREFEGLVSRGYREIVLTGINIGYY-GFDLDS---SLVKLLIELDKLEGE 214

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R  +  P  +   L+        +  +LHL +QSGS+RIL++M R++T  EY + +D
Sbjct: 215 WRIRLGSLDPDRVDGELLHLITTSRRMARHLHLSLQSGSNRILRAMRRKYTVDEYLRAVD 274

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           R RSV    A ++D I GFPGE D D + ++ +V+++ + +   F++S R GT  + M +
Sbjct: 275 RARSVDTRFAFTTDLIAGFPGENDSDHKESLKVVEQVEFLKVHVFRFSRRPGTEAAEMKD 334

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422
           Q+D   K  R   L +  +  +  + +  +G+   VLI+K G
Sbjct: 335 QIDSGTKKARSHELIEAGKRSRKKYLERQIGRKACVLIQKTG 376


>gi|239996912|ref|ZP_04717436.1| MiaB-like tRNA modifying enzyme YliG [Alteromonas macleodii ATCC
           27126]
          Length = 484

 Score =  164 bits (414), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 130/413 (31%), Positives = 197/413 (47%), Gaps = 38/413 (9%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ DS R+     ++GY+ V + +DADL+++NTC   + A E+    +G     
Sbjct: 43  SLGCPKNLVDSERILTQLRTEGYDVVPTYNDADLVIVNTCGFIDAAVEESLDTIGEA--- 99

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               +KE G   V+V GC+   E +EI    P V  + GP  Y  + E +       +  
Sbjct: 100 ----LKENGK--VIVTGCLGVKE-DEIRELHPNVLAITGPHAYETVVEQVHDHLPKPQ-- 150

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
                  + FE L I D G        A+L I EGC+  CTFC++P  RG  +SR +  V
Sbjct: 151 ------HNPFEDL-IPDHGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGDLVSRPVGNV 203

Query: 211 VDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYSLSEIKG 259
           +DEA++L D GV E+ ++ Q+ +A           W G  +   K     L   L E+  
Sbjct: 204 LDEAKRLKDAGVKELLVISQDTSAYGVDVKHRTGFWNGMPV---KAHMQQLCEKLGEMGI 260

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
            VRL Y   +P    D LI    +  +L PYL +P Q  + RILK M R  +A    + +
Sbjct: 261 WVRLHYVYPYPH--VDDLIPLMNEGKIL-PYLDIPFQHANKRILKLMKRPGSAERVLERV 317

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            + R   P + I S FIVGFPGET+++F   +D + +    +  +F YSP  G   +++ 
Sbjct: 318 KKWREQCPSLVIRSTFIVGFPGETEEEFEELLDFLREAQLDRVGAFAYSPVEGARANDLP 377

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS 432
           + V E VK  RL    +   E   +   A +G   +V+I+    E    VGR+
Sbjct: 378 DPVPEEVKQARLARFMEVQGEISAARLQARIGNEYQVVIDSVDAEGA--VGRT 428


>gi|78187582|ref|YP_375625.1| MiaB-like tRNA modifying enzyme [Chlorobium luteolum DSM 273]
 gi|78167484|gb|ABB24582.1| MiaB-like tRNA modifying enzyme [Chlorobium luteolum DSM 273]
          Length = 438

 Score =  164 bits (414), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 106/346 (30%), Positives = 171/346 (49%), Gaps = 19/346 (5%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N  +S  +       G+      + ADL++++TC +  +A +K      +IR L
Sbjct: 10  TLGCKLNYAESSSILQGLVEGGWVACGPEEGADLLIVHTCAVTGQAEQKCRQ---KIRQL 66

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               I+   +  V V GC AQ    E+L     V+ V G +  + L   L  A+ G+  +
Sbjct: 67  ----IRRNPECRVAVIGCYAQLS-PEVLGGIEGVDAVFGNKEKFDLDRYLAVAKGGRSAL 121

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRG---VTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
                      RL     G +   G     AFL IQ+GCD  C +C +P  RG   S   
Sbjct: 122 PA--VAAGSVSRLQTASPGCSPPAGSGRTRAFLKIQDGCDYLCAYCTIPLARGRSRSIEP 179

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
             V+ +A +L  +G  EI L G N   +R  G+D     F  LL  L E+  + R+R ++
Sbjct: 180 EDVLRQAHRLAGSGYREIVLSGVNTGDYRSGGVD-----FPALLRMLEEVP-VSRIRISS 233

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
             P  +S   ++  G    ++P+ HLP+QSGSD +L++M RR+TA  YR+ +  +R V P
Sbjct: 234 LEPDMLSPAFLQVVGSSARIVPHFHLPLQSGSDPVLRAMRRRYTAEGYRRAVHALREVLP 293

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
             A+ +D +VG+PGE ++DF+A    ++++  +    F  S R GT
Sbjct: 294 GCAVGADVMVGYPGEEEEDFQAMYGFIEQLPLSYLHVFSCSVRPGT 339


>gi|327310209|ref|YP_004337106.1| MiaB family RNA modification protein [Thermoproteus uzoniensis
           768-20]
 gi|326946688|gb|AEA11794.1| RNA modification enzyme, MiaB family [Thermoproteus uzoniensis
           768-20]
          Length = 416

 Score =  164 bits (414), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 138/454 (30%), Positives = 218/454 (48%), Gaps = 54/454 (11%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R +V++YGC +   D+   + +    G     S  DADL+++ TC +RE          G
Sbjct: 2   RIYVETYGCWLAKADA---QILLQRLGGAVAESPRDADLVLVYTCAVRED---------G 49

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +R L+           +VVAGC+A+A      R   I  V    +  Y  PE +E    
Sbjct: 50  EVRQLRRLGQLASESKRLVVAGCLAKA------RPYTIRQVAKNAELLY--PEQVEGGEG 101

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG---IE 202
               V            L   DGG      +   + +Q GC   CTFC+  YTRG     
Sbjct: 102 RSMSV------------LPEPDGG------LIYTVPLQVGCLGNCTFCITKYTRGGAGYV 143

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE---KCTFSDLLYS-LSEIK 258
            S     VV+  +K +  G  EI L GQ+V  +   G D          DLL   LS+++
Sbjct: 144 KSAPPDLVVEYVKKAVAKGAKEIYLTGQDVITY---GFDARWRRGWNLPDLLEKILSQVE 200

Query: 259 GLVRLRYTTSHPR---DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
           G  R+R   S P      +D ++      + +  Y HLPVQSGSD +L+ M RR+TA EY
Sbjct: 201 GDYRIRIGMSEPWVFGKFADAILDIVKRDERVYRYFHLPVQSGSDEVLRRMGRRYTADEY 260

Query: 316 RQIIDRI-RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
           R +I +I R +  D+ +++D IVGFPGET++DFRAT+ L++++ + +    +YS R  T 
Sbjct: 261 RGLISKIKRELNDDVFVATDVIVGFPGETEEDFRATLRLMEELEFDKVHVARYSRRPFTE 320

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPW 434
            S M EQ+ + VK +R     +   +   + N   +G+ ++VL+++   + G +VGR+P 
Sbjct: 321 ASVMPEQIPDAVKKQRSKIASELALKIAHARNSRLIGRRLKVLVDE--VDHGLVVGRAPD 378

Query: 435 LQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            + VV+      +G  ++V I   +   L+ + V
Sbjct: 379 YRQVVVGRGEGPLGSFLEVEIERAEPVYLWAKGV 412


>gi|209520560|ref|ZP_03269316.1| MiaB-like tRNA modifying enzyme YliG [Burkholderia sp. H160]
 gi|209498997|gb|EDZ99096.1| MiaB-like tRNA modifying enzyme YliG [Burkholderia sp. H160]
          Length = 476

 Score =  164 bits (414), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 137/490 (27%), Positives = 222/490 (45%), Gaps = 65/490 (13%)

Query: 13  MVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHI 72
           M S   +    P+  FV S GC   + DS ++     ++GYE   + D ADL+V+NTC  
Sbjct: 17  MSSTPSNALATPKVGFV-SLGCPKALVDSEQIITQLRAEGYEISGTYDGADLVVVNTCGF 75

Query: 73  REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVA---QAEGEEILRR-SPIVNVVV 128
            ++A ++    +G         + E G   V+V GC+     A G  ++    P V  V 
Sbjct: 76  IDEAVQESLDAIGEA-------LSENGK--VIVTGCLGAKKSASGSGLIEEVHPKVLAVT 126

Query: 129 GPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
           GP     + E+++       V +      D F  L    G     R   A+L I EGC+ 
Sbjct: 127 GPHA---VGEVMQA------VHNHLPKPHDPFVDLVPAAGVKLTPRHY-AYLKISEGCNH 176

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRG 237
            CTFC++P  RG  +SR +++V+ EA  L  +GV E+ ++ Q+ +A           W G
Sbjct: 177 RCTFCIIPSMRGDLVSRPVAEVMLEAENLFKSGVKELLVISQDTSAYGVDVKYRTGFWNG 236

Query: 238 KGLDGEKCTFSDLLYSLSEIKG----LVRLRYTTSHPR------DMSDCLIKAHGDLDVL 287
           K +   K   +DL+ +L E+       VRL Y   +P        M++   K H     +
Sbjct: 237 KPI---KTRMTDLVAALGELAAQYGAWVRLHYVYPYPSVDEVIPMMAEGPYKGH-----V 288

Query: 288 MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDF 347
           +PYL +P Q     +LK M R   A +  + +   R + PD+ I S FI GFPGET++ F
Sbjct: 289 LPYLDVPFQHAHPEVLKRMKRPANAEKVMERVKAWREICPDLTIRSTFIAGFPGETEEQF 348

Query: 348 RATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFND 407
              +D + +    +   F YSP  G   + +   + + V+ ER     +   +       
Sbjct: 349 ETLLDFIREAELDRVGCFAYSPVEGASANELDGALPDEVREERRARFMEVAEQVSAKRIA 408

Query: 408 ACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVL------NSKNHNIGDIIKVRITD 457
             VG+ ++VL+++   + G  VGR+    P +  VV        SK + +GD + V+IT 
Sbjct: 409 KKVGKTLKVLVDEINADGG--VGRTAADAPEIDGVVYIAPTTKASKRYKVGDFVSVKITG 466

Query: 458 VKISTLYGEL 467
                L+GE+
Sbjct: 467 ADGHDLWGEV 476


>gi|237720003|ref|ZP_04550484.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|229450555|gb|EEO56346.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
          Length = 439

 Score =  164 bits (414), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 121/433 (27%), Positives = 213/433 (49%), Gaps = 29/433 (6%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N  ++  +  +    G       + AD+ V+NTC + E A +K    + R+   
Sbjct: 16  TLGCKLNFSETSTIGKILREAGVRTARKGEKADICVVNTCSVTEMADKKCRQAIHRL--- 72

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL---ERARFGK 147
               +K+  D  VVV GC AQ +  ++ +    V+VV+G +    L + L   ++   G+
Sbjct: 73  ----VKQHPDAFVVVTGCYAQLKPGDVAKIDG-VDVVLGAEQKGELLQYLGDLQKHEKGE 127

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
            +  T   +       S  D    R R    FL +Q+GCD FC++C +P+ RG   + ++
Sbjct: 128 AITTTTKDIRSFSPSCSRGD----RTR---FFLKVQDGCDYFCSYCTIPFARGRSRNGTI 180

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
           + +V++AR+    G  EI L G N+  + GK   GE  +F DL+ +L +++G+ R R ++
Sbjct: 181 ASMVEQARQAAAEGGKEIVLTGVNIGDF-GK-TTGE--SFFDLVKALDQVEGIERYRISS 236

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
             P  ++D +I+        MP+ H+P+QSG D +L+ M RR+    +   + +I+ V P
Sbjct: 237 IEPNLLTDEIIEFVSHSRSFMPHFHIPLQSGCDEVLQLMRRRYDTALFASKVKKIKEVMP 296

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG---SNMLEQVDE 384
           D  I  D IVG  GET + F      +D +   Q   F YS R GT       ++   ++
Sbjct: 297 DAFIGVDVIVGTRGETPEYFEQAYQFIDGLDVTQLHVFSYSERPGTQALKIEYVVSPEEK 356

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
           + +++RLL L  +  +   +F    +GQ + VL+EK  K    + G +     V + S +
Sbjct: 357 HQRSQRLLALSDQKTQ---AFYARHIGQTMPVLMEK-SKAGAPMHGFTENYIRVEVESDD 412

Query: 445 HNIGDIIKVRITD 457
                ++ VR+ D
Sbjct: 413 SLDNQVVNVRLGD 425


>gi|254437866|ref|ZP_05051360.1| MiaB-like tRNA modifying enzyme [Octadecabacter antarcticus 307]
 gi|198253312|gb|EDY77626.1| MiaB-like tRNA modifying enzyme [Octadecabacter antarcticus 307]
          Length = 424

 Score =  164 bits (414), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 109/355 (30%), Positives = 177/355 (49%), Gaps = 31/355 (8%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  M+++  + G +        + +++NTC +  +A  K    + ++R  
Sbjct: 11  TLGCRLNAYETEAMKELAGAAGVQ--------NAVIVNTCAVTAEAVRKAKKEIRKLR-- 60

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG------PQTYYRL-PELLERA 143
                +E  D  ++V GC AQ E E  +   P V+ V+G        T+  + P+L+ + 
Sbjct: 61  -----RENPDATLIVTGCAAQTEPETFIAM-PEVSKVIGNTEKMQAATWAGMAPDLIGQT 114

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
              +  VD   SV +    L  +DG   R R   A++ +Q GCD  CTFC++PY RG   
Sbjct: 115 EPVQ--VDDIMSVTETAGHL--IDGFGTRSR---AYVQVQNGCDHRCTFCIIPYGRGNSR 167

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           S     VV++ ++L+  G  EI L G ++ +W G  L         ++  L  +  L RL
Sbjct: 168 SVPAGVVVEQIKRLVGKGYNEIVLTGVDLTSW-GADLPVLPKLGDLVMRILKLVPDLPRL 226

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R ++    ++ D L++A      LMP+LHL +Q G D +LK M RRH   +  +  +  R
Sbjct: 227 RISSIDSIEVDDNLMRAIATEPRLMPHLHLSLQHGDDLMLKRMKRRHLRDDAIKFSEDAR 286

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
            +RPD+   +D I GFP ET+  F  ++ LVD         F YSPR GTP + M
Sbjct: 287 KLRPDMTFGADIIAGFPTETEAHFENSLKLVDDCALTWLHVFPYSPRHGTPAARM 341


>gi|32477342|ref|NP_870336.1| hypothetical protein RB12138 [Rhodopirellula baltica SH 1]
 gi|32447893|emb|CAD77411.1| conserved hypothetical protein [Rhodopirellula baltica SH 1]
          Length = 428

 Score =  164 bits (414), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 116/403 (28%), Positives = 202/403 (50%), Gaps = 38/403 (9%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +   ++ GC++N Y++  +     + GYE  +  + ADL ++NTC + E    K    + 
Sbjct: 4   KLRTRTLGCKVNQYETELVRQGLQTIGYEDASDGESADLCIVNTCTVTETGDAKSRQVVR 63

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R+        +E  D  +VV GC A    EE+     +V V+   +    L +L+   RF
Sbjct: 64  RLN-------RENPDARIVVMGCYATRAPEEVSALPGVVEVLTDKR---ELGDLM--GRF 111

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G   V T  S            G   RKR   A++ +Q+GC   C++C++P  R    SR
Sbjct: 112 GVIDVPTGLS------------GFAGRKR---AYVKVQDGCLLRCSYCIIPMVRPKLHSR 156

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNA----WRGKGLDGEKCTFSDLLYSLSEIKGLV 261
              ++VDE  +L+D G  E+ L G ++      W       E    + L+  L +I G  
Sbjct: 157 PSQEIVDEVTRLVDAGHREVILTGIHLGHYGVDWNRNKPREEWVRLAHLVKDLCQIPGQF 216

Query: 262 RLRYTTSHPRDMSDCLIKAHGDL-DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
           R+R ++    +++  LI    +  + ++P+LHL +QSGSD +L+ M RR   +  +  +D
Sbjct: 217 RIRMSSIEATEVTRELIGVMAEFPEKVVPHLHLCLQSGSDSVLRRMRRR---WGTKMFLD 273

Query: 321 RIRSVRPDI---AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
           R R +R  +   AI++D I GFPGET+++F  T+    + G+++  +F YS R GTP + 
Sbjct: 274 RCRLLRESLDRPAITTDIIAGFPGETEEEFEQTLRTCREAGFSKIHAFPYSARRGTPAAE 333

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
             +Q+D+ + +ER+  L +   E +  +    VG  +E+L+E+
Sbjct: 334 RDDQLDKGLISERVDRLGEVEAELRQQYYKTLVGSNLELLVEE 376


>gi|237714843|ref|ZP_04545324.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262406886|ref|ZP_06083435.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacteroides sp. 2_1_22]
 gi|294647146|ref|ZP_06724745.1| MiaB-like protein [Bacteroides ovatus SD CC 2a]
 gi|229445168|gb|EEO50959.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262355589|gb|EEZ04680.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacteroides sp. 2_1_22]
 gi|292637433|gb|EFF55852.1| MiaB-like protein [Bacteroides ovatus SD CC 2a]
          Length = 439

 Score =  164 bits (414), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 123/447 (27%), Positives = 221/447 (49%), Gaps = 31/447 (6%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N  ++  +  +    G       + AD+ V+NTC + E A +K    + R+   
Sbjct: 16  TLGCKLNFSETSTIGKILREAGVRTARKGEKADICVVNTCSVTEMADKKCRQAIHRL--- 72

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL---ERARFGK 147
               +K+  D  VVV GC AQ +  ++ +    V+VV+G +    L + L   ++   G+
Sbjct: 73  ----VKQHPDAFVVVTGCYAQLKPGDVAKIDG-VDVVLGAEQKGELLQYLGDLQKHEKGE 127

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
            +  T   +       S  D    R R    FL +Q+GCD FC++C +P+ RG   + ++
Sbjct: 128 AITTTTKDIRSFSPSCSRGD----RTR---FFLKVQDGCDYFCSYCTIPFARGRSRNGTI 180

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
           + +V++AR+    G  EI L G N+  + GK   GE  +F DL+ +L +++G+ R R ++
Sbjct: 181 ASMVEQARQAAAEGGKEIVLTGVNIGDF-GK-TTGE--SFFDLVKALDQVEGIERYRISS 236

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
             P  ++D +I+        MP+ H+P+QSG D +L+ M RR+    +   + +I+ V P
Sbjct: 237 IEPNLLTDEIIEFVSHSRSFMPHFHIPLQSGCDEVLQLMRRRYDTALFASKVKKIKEVMP 296

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG---SNMLEQVDE 384
           D  I  D IVG  GET + F      +D +   Q   F YS R GT       ++   ++
Sbjct: 297 DAFIGVDVIVGTRGETPEYFEQAYQFIDGLDVTQLHVFSYSERPGTQALKIEYVVSPEEK 356

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
           + +++RLL L     ++  +F    +GQ + VL+EK  K    + G +     V + S +
Sbjct: 357 HQRSQRLLALSD---QKTQAFYARHIGQTMPVLMEK-SKAGAPMHGFTENYIRVEVESDD 412

Query: 445 HNIGDIIKVRITDV--KISTLYGELVV 469
                +I VR+ +   +++ L G +++
Sbjct: 413 SLDNQVINVRLGEFNEEMTALKGTILI 439


>gi|302346286|ref|YP_003814584.1| MiaB-like protein [Prevotella melaninogenica ATCC 25845]
 gi|302150387|gb|ADK96648.1| MiaB-like protein [Prevotella melaninogenica ATCC 25845]
          Length = 449

 Score =  164 bits (414), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 113/401 (28%), Positives = 191/401 (47%), Gaps = 18/401 (4%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N  ++       ++ G       + AD+ ++NTC + E A  K    + R+   
Sbjct: 16  TLGCKLNFSETSTFARTLYNMGVREAKKTEQADICLINTCSVTEVADHKCRQIIHRM--- 72

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               +++     V+V GC AQ E   + +    V++V+G      L + L  A + K   
Sbjct: 73  ----VRQNPGAFVIVTGCYAQLESATVAKIEG-VDLVLGSNEKADLVQYLSDA-WNKVDT 126

Query: 151 DTDYSVEDKFERLSIVD-----GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
             + + E ++  +   D        +R      FL +Q+GC+ FCT+C +P+ RG   + 
Sbjct: 127 AKEETSEGEYHSVKTKDIKSFQASCSRGNRTRYFLKVQDGCNYFCTYCTIPFARGFSRNP 186

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           ++  +V +A +    G  EI L G N+  + GK   GE  +F DL+ +L +++G+ R R 
Sbjct: 187 TIQSLVAQAEEAAREGGKEIVLTGVNIGDF-GK-TTGE--SFLDLVKALDKVEGIQRFRI 242

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
           ++  P  + D LI    +    MP+ HLP+QSGSD +L+ M+RR+    + + I  I+  
Sbjct: 243 SSLEPDLIDDELIAYCAESRAFMPHFHLPLQSGSDEVLELMHRRYDTALFARKIKLIKEK 302

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            PD  I  D +VG  GE  + F    + +D +   Q   F YS R GT   ++   VD+ 
Sbjct: 303 MPDAFIGVDVMVGSRGERPEYFEDCYNFLDSLPVTQLHVFPYSERPGTAALSIPYVVDDR 362

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG 426
            K  R   L K   E+  +F    +GQ  +VL EK  + K 
Sbjct: 363 EKKHRAHKLLKLSDEKTRTFYAEHIGQEADVLFEKAARGKA 403


>gi|242075846|ref|XP_002447859.1| hypothetical protein SORBIDRAFT_06g017040 [Sorghum bicolor]
 gi|241939042|gb|EES12187.1| hypothetical protein SORBIDRAFT_06g017040 [Sorghum bicolor]
          Length = 623

 Score =  164 bits (414), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 121/451 (26%), Positives = 212/451 (47%), Gaps = 34/451 (7%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           Q  +VK++GC  N  DS  M     + GY      + ADL ++NTC ++  +   + + +
Sbjct: 55  QTIYVKTFGCSHNQSDSEYMSGQLSAFGYAITEEPEGADLWLINTCTVKNPSQSAMTTLI 114

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            + +N             +VVAGCV Q  G + L+    ++++ G Q   R+ E++E   
Sbjct: 115 SKCKNANKP---------LVVAGCVPQ--GSQGLKELEGISII-GVQQIDRVVEVVEETL 162

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G  V           + L  +D    RK      L I  GC   CT+C   + RG   S
Sbjct: 163 KGHEVRLLSR------KTLPSLDLPKVRKNKFIEILPINVGCLGACTYCKTKHARGHLGS 216

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
            ++  +VD  + ++  GV EI L  ++  A+ G+ +        + + +   +     LR
Sbjct: 217 YTIDSLVDRVKTVVSEGVREIWLSSEDTGAY-GRDISTNLPNLLNAIVAELPVDQSTMLR 275

Query: 265 YTTSHPRDMSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
              ++P  + + L +    L    +  +LH+PVQSGSD +L +MNR +T  E+R+++D +
Sbjct: 276 IGMTNPPFILEHLKEIAAVLCHPCVYSFLHVPVQSGSDAVLTAMNREYTVAEFRKVVDTL 335

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
             + P + I++D I GFPGETD+DF  T++LV +  + Q    ++ PR GTP + M +  
Sbjct: 336 YELVPGMQIATDIICGFPGETDEDFSETVNLVKEYQFPQVHISQFYPRPGTPAARMKKVP 395

Query: 383 DENVKAERLLCLQKKLREQQVSFN-----DACVGQIIEVLIEKHGKEKGKLVGRSPWLQS 437
              VK        K+ RE    F          G++  + I +   +   LVG +     
Sbjct: 396 SNEVK--------KRSRELTSVFELFSPYQGMEGKVERIWITEIATDGVHLVGHTKGYIQ 447

Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           V++ + +  +G    V+IT V   +++GE++
Sbjct: 448 VLVIAPDSLLGTSANVKITSVGRWSVFGEVI 478


>gi|295084759|emb|CBK66282.1| MiaB-like tRNA modifying enzyme [Bacteroides xylanisolvens XB1A]
          Length = 439

 Score =  164 bits (414), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 124/448 (27%), Positives = 222/448 (49%), Gaps = 33/448 (7%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N  ++  +  +    G       + AD+ V+NTC + E A +K    + R+   
Sbjct: 16  TLGCKLNFSETSTIGKILREAGVRTARKGEKADICVVNTCSVTEMADKKCRQAIHRL--- 72

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL---ERARFGK 147
               +K+  D  VVV GC AQ +  ++ +    V+VV+G +    L + L   ++   G+
Sbjct: 73  ----VKQHPDAFVVVTGCYAQLKPGDVAKIDG-VDVVLGAEQKGELLQYLGDLQKHEKGE 127

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
            +  T   +       S  D    R R    FL +Q+GCD FC++C +P+ RG   + ++
Sbjct: 128 AITTTTKDIRSFSPSCSRGD----RTR---FFLKVQDGCDYFCSYCTIPFARGRSRNGTI 180

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
           + +V++AR+    G  EI L G N+  + GK   GE  +F DL+ +L +++G+ R R ++
Sbjct: 181 ASMVEQARQAAAEGGKEIVLTGVNIGDF-GK-TTGE--SFFDLVKALDQVEGIERYRISS 236

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
             P  ++D +I+        MP+ H+P+QSG D +L+ M RR+    +   + +I+ V P
Sbjct: 237 IEPNLLTDEIIEFVSHSRSFMPHFHIPLQSGCDEVLQLMRRRYDTALFASKVKKIKEVMP 296

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG---SNMLEQVDE 384
           D  I  D IVG  GET + F      +D +   Q   F YS R GT       ++   ++
Sbjct: 297 DAFIGVDVIVGTRGETPEYFEQAYQFIDGLDVTQLHVFSYSERPGTQALKIEYVVSPEEK 356

Query: 385 NVKAERLLCLQKKLREQQVSFNDAC-VGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
           + +++RLL L     +Q+     AC +GQ + VL+EK  K    + G +     V + S 
Sbjct: 357 HQRSQRLLALS----DQKTQAFYACHIGQTMPVLMEK-SKTGAPMHGFTENYIRVEVESD 411

Query: 444 NHNIGDIIKVRITDV--KISTLYGELVV 469
           +     ++ VR+ +   +++ L G +++
Sbjct: 412 DSLDNQVVNVRLGEFNEEMTALKGTILI 439


>gi|190893801|ref|YP_001980343.1| methylase (RNA modification enzyme), MiaB family [Rhizobium etli
           CIAT 652]
 gi|190699080|gb|ACE93165.1| putative methylase protein (RNA modification enzyme), MiaB family
           [Rhizobium etli CIAT 652]
          Length = 423

 Score =  164 bits (414), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 119/400 (29%), Positives = 186/400 (46%), Gaps = 30/400 (7%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V ++GC++N Y+S  M+      G          + +V+NTC +  +A  +         
Sbjct: 6   VITFGCRLNTYESEVMKAQAEKAGLN--------NAVVVNTCAVTGEAVRQARQ------ 51

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ------TYYRLPELLER 142
                  ++     ++V GC AQ E ++     P V+ V+G +      +Y  LP+    
Sbjct: 52  -AIRRARRDNPHARIIVTGCAAQTE-KQTFAAMPEVDAVLGNEEKLSSASYRSLPDFGVS 109

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           A+   RV D         + +  +DG       V AF+ +Q GCD  CTFC++PY RG  
Sbjct: 110 AQEKLRVNDIMSVKATAPQMVRHIDGH------VRAFIQVQNGCDHRCTFCIIPYGRGNS 163

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            S  +  VVD+AR+L D+G  EI L G +  ++ G  L G           L +I  + R
Sbjct: 164 RSVPMGAVVDQARRLADSGYREIVLTGVDATSY-GGDLPGAPTLGVLAKTLLKQIPDIRR 222

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LR ++    +    L+    D    MP+LHL +Q G D ILK M RRH   +  + I   
Sbjct: 223 LRLSSIDSIEADAHLMDLIADEPRFMPHLHLSLQHGDDMILKRMKRRHLRADALRFIAEA 282

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R +RP+++  +D I GFP ET++ F   + L ++ G A    F YS R GTP + M  Q+
Sbjct: 283 RRLRPEMSFGADMIAGFPTETEEMFDNAVRLAEEAGIAHLHVFPYSARPGTPAARM-PQL 341

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422
           D ++  +R   L+        S  D  VG    +L+E +G
Sbjct: 342 DRSLVKDRAARLRATGHRLHQSHLDGMVGTRQWLLVENNG 381


>gi|15604281|ref|NP_220797.1| hypothetical protein RP416 [Rickettsia prowazekii str. Madrid E]
 gi|6226371|sp|Q9ZDB6|Y416_RICPR RecName: Full=Putative methylthiotransferase RP416
 gi|3860973|emb|CAA14873.1| unknown [Rickettsia prowazekii]
 gi|292572029|gb|ADE29944.1| MiaB-like tRNA modifying enzyme [Rickettsia prowazekii Rp22]
          Length = 421

 Score =  164 bits (414), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 114/397 (28%), Positives = 193/397 (48%), Gaps = 35/397 (8%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           ++GC++N+Y+S  +       G + V         + NTC + + A ++    + + +  
Sbjct: 16  TFGCRLNIYESEIIRKNLELSGLDNV--------AIFNTCAVTKSAEKQARQAIRKAK-- 65

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT----YYRLPELLERARFG 146
                K   DL ++V GC AQA  +     S +  V+   +     YY++ +        
Sbjct: 66  -----KNNPDLKIIVTGCSAQANPKMYGNMSEVDKVIGNEEKLLSHYYQITD-------Q 113

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           K  V+   SV++    L     G +R     AF+ +Q GCD  CTFC++PY RG   S  
Sbjct: 114 KISVNDIMSVKETACHLVSSFDGKSR-----AFIQVQNGCDHNCTFCIIPYVRGKSRSIP 168

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS-LSEIKGLVRLRY 265
           +  +V + + L+  G  E+ + G +V A+ G  L G   TF+ ++   L  +  L R+R 
Sbjct: 169 IGTIVAQVKHLVLKGFKEVVITGVDVTAY-GSDLPGSP-TFAQMIKRVLKLVPELKRMRL 226

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
           ++    ++ D L +     + +MP+ H+ VQSG D ILK M RRH      +   ++R++
Sbjct: 227 SSIDIAEIDDELFELIAYSERIMPHFHISVQSGDDMILKRMKRRHNRASVIEFCQKLRAI 286

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
           RP+++  +D I GFP ET++ F  T  L+ +        F YS R GTP + M  QV +N
Sbjct: 287 RPEVSFGADIIAGFPTETNEMFENTRKLILEAELQYLHVFPYSEREGTPAARM-PQVPQN 345

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422
           ++ ER   L++    Q   F    +GQ +E+LIE + 
Sbjct: 346 IRKERAKILRQDGFNQLNEFFKRHIGQKVELLIENNN 382


>gi|109069747|ref|XP_001098819.1| PREDICTED: CDK5 regulatory subunit associated protein 1-like 1
           isoform 3 [Macaca mulatta]
          Length = 576

 Score =  164 bits (414), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 122/454 (26%), Positives = 215/454 (47%), Gaps = 35/454 (7%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           Q+ +++++GC  N  D   M     + GY+   +  DADL +LN+C ++  A +    F 
Sbjct: 64  QKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDH---FR 120

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             I+  +    K      +V+AGCV QA+  +   +      ++G Q   R+ E++E   
Sbjct: 121 NSIKKAQEENKK------IVLAGCVPQAQPRQDYLKG---LSIIGVQQIDRVVEVVEETI 171

Query: 145 FGKRVVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            G  V       +D   RL  + +D    RK  +   ++I  GC   CT+C   + RG  
Sbjct: 172 KGHSVRLLGQK-KDNGRRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNL 230

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI----- 257
            S  + ++VD A++    GVCEI L  ++  A+ G+ +         LL+ L E+     
Sbjct: 231 ASYPIDELVDRAKQSFQEGVCEIWLTSEDTGAY-GRDIG---TNLPTLLWKLVEVIPEGA 286

Query: 258 ---KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
               G+    Y   H  +M+  L     +   +  +LH+PVQS SD +L  M R +   +
Sbjct: 287 MLRLGMTNPPYILEHLEEMAKIL-----NHPRVYAFLHIPVQSASDSVLMEMKREYCVAD 341

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
           +++++D ++   P I I++D I GFPGETD DF+ T+ LV++  +   F  ++ PR GTP
Sbjct: 342 FKRVVDFLKEKVPGITIATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTP 401

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPW 434
            + M EQV   VK +R   L         S  +  +G+  +VL+ +   +    V  + +
Sbjct: 402 AAKM-EQVPAQVKKQRTKDLSWVF--HSYSPYNHKIGERQQVLVTEESFDSKFYVAHNRF 458

Query: 435 LQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            + V++      +G +++V I +     + G+ V
Sbjct: 459 YEQVLVPKNPAFMGKMVEVDICESGKHFMKGQPV 492


>gi|116254271|ref|YP_770109.1| methylase [Rhizobium leguminosarum bv. viciae 3841]
 gi|115258919|emb|CAK10028.1| putative methylase [Rhizobium leguminosarum bv. viciae 3841]
          Length = 424

 Score =  164 bits (414), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 123/403 (30%), Positives = 190/403 (47%), Gaps = 36/403 (8%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIR-EKAAEKVYSFLGRI 87
           V ++GC++N Y+S  M+      G          + I++NTC +  E   +   +     
Sbjct: 6   VITFGCRLNTYESEVMKAQAEKAGLN--------NAILVNTCAVTGEAVRQARQAIRRAR 57

Query: 88  RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ------TYYRLPELLE 141
           R+  ++RI        +VAGC AQ E +     +  V+ V+G +      +Y  LP+   
Sbjct: 58  RDHPHARI--------IVAGCAAQTEKQTFAAMAE-VDAVLGNEEKLTSASYRSLPDFGV 108

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
            A    RV D         + +  +DG       V AF+ +Q GCD  CTFC++PY RG 
Sbjct: 109 SAEEKLRVNDIMSVKATAPQMVRHIDGH------VRAFIQVQNGCDHRCTFCIIPYGRGN 162

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG--KGLDGEKCTFSDLLYSLSEIKG 259
             S  +  VVD+A KL+D G  EI L G +  ++ G   G          LL  L +I+ 
Sbjct: 163 SRSVPMGAVVDQASKLVDGGYREIVLTGVDATSYGGDLPGAPTLGLLAKTLLKQLPDIR- 221

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
             RLR ++    +    L+    D    MP+LHL +Q G D ILK M RRH   +  + I
Sbjct: 222 --RLRLSSIDSIEADAHLMDLIADEPRFMPHLHLSLQHGDDMILKRMKRRHLRADALRFI 279

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
           +  R +RP+++  +D I GFP ET++ F   + L ++ G A    F YSPR GTP + M 
Sbjct: 280 EDARRLRPEMSFGADMIAGFPTETEEMFENAVRLAEEAGIAHLHVFPYSPRPGTPAARM- 338

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422
            Q+D ++  +R   L+        S  D  +G    +L+E +G
Sbjct: 339 PQLDRSLVKDRAARLRAAGHMLHQSHLDRMIGTRQWLLVENNG 381


>gi|161833745|ref|YP_001597941.1| putative MiaB-like protein [Candidatus Sulcia muelleri GWSS]
 gi|152206235|gb|ABS30545.1| putative MiaB-like protein [Candidatus Sulcia muelleri GWSS]
          Length = 429

 Score =  164 bits (414), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 107/359 (29%), Positives = 185/359 (51%), Gaps = 19/359 (5%)

Query: 33  GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92
           GC++N  ++  + + F  +GYE V  +  ADL ++NTC +  K AEK    L RI     
Sbjct: 11  GCKLNFAETDTIINKFLKKGYEYVKFISYADLYIINTCSV-TKNAEKELKKLVRIA---- 65

Query: 93  SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDT 152
             I    +  +V  GC +Q   +EI   + I ++++G +  + +   L++  + K+ +  
Sbjct: 66  --INNNVNAFIVAIGCYSQVNPKEISLINGI-DLIIGSKEKFNIINHLKKI-YKKKFL-- 119

Query: 153 DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVD 212
             S++DK    +I    Y+R     ++L IQ+GCD  C++C +P  RG  IS ++  ++ 
Sbjct: 120 --SLKDK----NIYIPSYSRLNRTRSYLKIQDGCDYKCSYCTIPKARGFSISDNIKNIIF 173

Query: 213 EARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV-RLRYTTSHPR 271
            A+ +I  G+ EI L G N+  + GK    E     +   +  +IK  + R+R ++  P 
Sbjct: 174 YAKNIIKQGIKEIVLTGVNIGDY-GKHNLLELIQAMESSLNEDDIKNFIKRIRISSIEPN 232

Query: 272 DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAI 331
            +SD +I       + + + H+P+QSGSD IL  M RR++   Y + I +I ++ P   I
Sbjct: 233 LLSDDIINFIYKSKIFVNHFHIPLQSGSDEILNKMKRRYSKNLYLERIKKILNIMPFACI 292

Query: 332 SSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER 390
            SD IVGFPGE + +F  T  L+ +I  +    F YS R+ T    M   + + ++ +R
Sbjct: 293 GSDVIVGFPGEKEKNFIETYSLLSEINISYLHVFSYSERINTKAFIMNNSITKKIRYKR 351


>gi|329960232|ref|ZP_08298674.1| tRNA methylthiotransferase YqeV [Bacteroides fluxus YIT 12057]
 gi|328532905|gb|EGF59682.1| tRNA methylthiotransferase YqeV [Bacteroides fluxus YIT 12057]
          Length = 439

 Score =  163 bits (413), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 119/430 (27%), Positives = 212/430 (49%), Gaps = 23/430 (5%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N  ++  +  +    G       + AD+ V+NTC + E A +K    + R+   
Sbjct: 16  TLGCKLNFSETSTIGKILREAGVRTARKGEKADICVVNTCSVTEVADKKCRQAIHRL--- 72

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               +K+     VVV GC AQ + + + +    V+VV+G +    L + L      K   
Sbjct: 73  ----VKQHPGAFVVVTGCYAQLKPDTVAKIEG-VDVVLGAEQKKDLLQYL--GNLQKHGT 125

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
              Y+     + +       +R      FL +Q+GCD +C++C +P+ RG   + S++ +
Sbjct: 126 GEAYT--SALKDIHSFAPSCSRGDRTRFFLKVQDGCDYYCSYCTIPFARGRSRNGSIASL 183

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270
           V++AR+    G  EI L G N+  + GK   GE  TF DL+ +L E++G+ R R ++  P
Sbjct: 184 VEQARQAAAEGGREIVLTGVNIGDF-GK-TTGE--TFFDLVKALDEVEGIERYRISSIEP 239

Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330
             +++ +I+        MP+ H+P+QSGSD +LK M RR+    +   + +I+   PD  
Sbjct: 240 NLLTEEIIEFVSRSKRFMPHFHIPLQSGSDEVLKLMRRRYDTALFASKVKKIKEAMPDSF 299

Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG---SNMLEQVDENVK 387
           I  D IVG  GET++ F    + +  +   Q   F YS R GT      +++   +++V+
Sbjct: 300 IGVDVIVGTRGETEEYFEQAYEFIKGLDVTQLHVFSYSERPGTQALKIDHVVSPAEKHVR 359

Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNI 447
           ++RLL L +   E+  +F    +GQ + VL+E+  K    + G +P    V +   +   
Sbjct: 360 SQRLLELSE---EKTRAFYARHIGQAMPVLLER-SKPGTPMHGFTPNYIRVEVPHDDALD 415

Query: 448 GDIIKVRITD 457
             ++ VR+ D
Sbjct: 416 NQVVTVRLGD 425


>gi|118580731|ref|YP_901981.1| MiaB-like tRNA modifying protein [Pelobacter propionicus DSM 2379]
 gi|118503441|gb|ABK99923.1| MiaB-like tRNA modifying enzyme [Pelobacter propionicus DSM 2379]
          Length = 427

 Score =  163 bits (413), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 124/398 (31%), Positives = 192/398 (48%), Gaps = 36/398 (9%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA-AEKVYSFLGRI 87
           + + GC+ N ++S  M + F   GY  V   + AD+ V+N+C +  +  AE         
Sbjct: 6   IATLGCKTNQFESAAMLEQFTRSGYRVVPFSEPADIYVINSCTVTARTDAETRRLIRRAR 65

Query: 88  RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147
           R    +RI        V  GC AQ   +E L R P V+VV+G            R +   
Sbjct: 66  RLNPAARI--------VATGCYAQVSPQE-LSRMPEVDVVLG-----------NREKLDS 105

Query: 148 RVVDTDYSVEDKFERLSIVDGGY-----NRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            ++ TD S ED  +      GG      +      AFL +Q GCD FC++C+VPY RG  
Sbjct: 106 TLL-TDAS-EDMVKDAGQATGGALLHLTSFAEHTRAFLQVQNGCDSFCSYCIVPYARGRS 163

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD---GEKCTFSDLLYSLSEIKG 259
            S S ++V++  R+L+D+G  E+ L G ++ A+   GLD   GE  + + L+  + E   
Sbjct: 164 RSVSPAEVLEGVRRLVDSGFREVVLTGIHLGAY---GLDLSPGE--SLACLVERILEETS 218

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           L RLR  +  P +  D LI        +  + H+P+QSG D +L  M R + A   R ++
Sbjct: 219 LERLRIGSLEPNEFDDRLISLFSRSPRVCHHFHIPLQSGCDSVLTLMGRPYDAAYLRSLL 278

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
           +R+ +  PD  + SD I GFPGE+D +F+ T  LV+++  A    F YS R GT  +++ 
Sbjct: 279 ERVIAAMPDSFLGSDIIAGFPGESDREFQTTCTLVEQLPLADLHVFPYSLRPGTRAASLP 338

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVL 417
             +   V  +R   L+     ++  F    VG  I VL
Sbjct: 339 GHLPPAVIRDRAARLRNIAASKKELFLQRAVGGDILVL 376


>gi|71664178|ref|XP_819072.1| tRNA modification enzyme [Trypanosoma cruzi strain CL Brener]
 gi|70884358|gb|EAN97221.1| tRNA modification enzyme, putative [Trypanosoma cruzi]
          Length = 530

 Score =  163 bits (413), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 124/453 (27%), Positives = 218/453 (48%), Gaps = 35/453 (7%)

Query: 28  FVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRI 87
           F+ ++GC  NV D   M  +    GY   +  + AD+ +LN+C ++  + E   S + R+
Sbjct: 52  FIHTFGCSHNVSDGEYMAGLLAQAGYRVTDVFNGADVYLLNSCTVKNPSEEHFISMMNRV 111

Query: 88  RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNV-VVGPQTYYRLPELLERARFG 146
           R         G  L  VVAGCV QA+     R +   +V V+G +   R+ E++  A  G
Sbjct: 112 R-------ATGKPL--VVAGCVPQADP----RNTQWDDVSVIGVRNIDRVGEVIHEALQG 158

Query: 147 K--RVVDTDYSVEDKFE--RLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
              R++  +    +K +   L  +D    R+      + I  GC   CT+C     RG  
Sbjct: 159 HCVRLIGVNEHANNKQDPNELPPLDLPKIRRNRFIEIIPISVGCLNHCTYCKTKQARGDL 218

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL-V 261
            S  +  +V   R ++  GV EI +  ++V A+   G+D      S L   + EI+G  V
Sbjct: 219 RSWPIESIVSRVRSVLKEGVKEIRITSEDVGAY---GIDINTDIVSLLRAIVKEIQGTEV 275

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLM------PYLHLPVQSGSDRILKSMNRRHTAYEY 315
            +R   S+P      L++   D   L+       ++H+P+QSGS+RIL +M R +T  E+
Sbjct: 276 MMRVGMSNP----PYLLRHLDDFAALLRHPNVYEFVHIPIQSGSNRILNAMQREYTLEEF 331

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
            + + RIRSV P++ +++D I  FPGE + ++R TM+L D + +      ++ PR  TP 
Sbjct: 332 YECVHRIRSVVPNVTLATDIICAFPGEGEAEWRETMELCDHVRFPVLNITRFYPRRNTPA 391

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWL 435
           ++M +Q+  +V   R   L +     +    D  VG++  V + +   +K  LVG +   
Sbjct: 392 ASM-KQIPTDVAKRRTSELTEFFNSYRTL--DQMVGEVHSVALLETAHDKHHLVGHTKAY 448

Query: 436 QSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
             V+++ +   +G+ + V I      ++ G ++
Sbjct: 449 VQVLVDPQEARLGETVTVVIMSTTKYSVVGRVL 481


>gi|291238003|ref|XP_002738926.1| PREDICTED: CDK5 regulatory subunit-associated protein 1-like 1-like
           [Saccoglossus kowalevskii]
          Length = 544

 Score =  163 bits (413), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 131/458 (28%), Positives = 215/458 (46%), Gaps = 43/458 (9%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           Q  +VK++GC  N  DS  M     S GY+   + + ADL +LN+C ++  A +      
Sbjct: 50  QSVYVKTWGCSHNNSDSEYMAGQLASYGYKITETEEAADLWLLNSCTVKTPAEQ------ 103

Query: 85  GRIRNLKNSRIK-EGGDLLVVVAGCVAQAEGEEILRRSPIVN--VVVGPQTYYRLPELLE 141
               + +NS IK    +  +V+AGCV QA+      +   +N   VVG Q   R+ E++E
Sbjct: 104 ----HFQNSIIKAREQNKYMVLAGCVPQAQP-----KLDYINGVSVVGVQQIDRIVEVVE 154

Query: 142 RARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
               G  V +      + K    + ++    RK  +   + I  GC   CT+C   Y RG
Sbjct: 155 ETFKGHTVRLFGQKKKDGKKIGGAPLNLPKIRKNPLIEIIAINTGCLNACTYCKTKYARG 214

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK-- 258
              S   S++V  A++  + GVCE+ L  ++  A+ GK +     T  +LL+ L E+   
Sbjct: 215 ELGSYQPSELVARAKQSFEEGVCELWLTSEDTGAY-GKDIG---VTIVELLWQLVEVIPD 270

Query: 259 ------GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
                 G+    Y   H  ++S  L         +  +LH+PVQSGSD +L  M R +  
Sbjct: 271 GCMMRIGMTNPPYILEHLEEISKILKHPR-----VYSFLHVPVQSGSDSVLMDMKREYCV 325

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
            +++ + + ++   P + I++D I GFP ETD+DF  TM LV++  +   F  +Y PR G
Sbjct: 326 DDFKHVCNFLKKRVPGVTIATDIICGFPTETDEDFDETMQLVEEYKFPSLFINQYFPRPG 385

Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLRE--QQVSFNDACVGQIIEVLIEKHGKEKGKLVG 430
           TP + M       VK        KKL +  Q     D  VG+   VL+ +   +    V 
Sbjct: 386 TPSAKMTRVPTREVKKR-----TKKLSQLFQDYRPYDHKVGEEQHVLVTEDSHDGRFYVA 440

Query: 431 RSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            + +   V++  + + +G +IKV+IT      L G+++
Sbjct: 441 HNKFYDQVLVPKEENLLGKMIKVKITSTGKHYLIGDIL 478


>gi|295133112|ref|YP_003583788.1| radical SAM superfamily protein, UPF0004 [Zunongwangia profunda
           SM-A87]
 gi|294981127|gb|ADF51592.1| radical SAM superfamily protein, UPF0004 [Zunongwangia profunda
           SM-A87]
          Length = 449

 Score =  163 bits (413), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 132/457 (28%), Positives = 223/457 (48%), Gaps = 53/457 (11%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC----HIREKAAEKVY 81
           R  V + GC  NVYDS  +     +   + V+  ++ +++V+NTC    + +E++   + 
Sbjct: 10  RINVVTLGCSKNVYDSEVLMGQLKANNKDVVHE-EEGNIVVINTCGFIDNAKEQSVNTIL 68

Query: 82  SFLGRIRNLKNSRIKEGGDL-LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140
            F+ +         KE GD+  V V GC+++    ++ +  P V+   G      LP LL
Sbjct: 69  EFVAK---------KEQGDVDKVFVTGCLSERYKPDLQKEIPNVDQYFGTT---ELPGLL 116

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
                  + ++ DY  E   ERL+     Y       A+L I EGCD+ C+FC +P  RG
Sbjct: 117 -------KALEADYKHELIGERLTTTPKNY-------AYLKIAEGCDRPCSFCAIPLMRG 162

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKG 259
              S  +  +V EA+KL  NGV E+ L+ Q++  +   GLD  +K   ++LL +L +++G
Sbjct: 163 GHKSTPIENLVTEAKKLAANGVKELILIAQDLTYY---GLDLYKKRNLAELLENLVKVEG 219

Query: 260 L--VRLRYT--TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
           +  +RL Y   T  P D+ + + +       +  YL +P+Q  SD +LKSM R  T  + 
Sbjct: 220 IEWIRLHYAFPTGFPMDVLEVMKREPK----ICNYLDIPLQHISDDLLKSMRRGTTHKKT 275

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
             ++ + R   P++AI +  IVG+PGET+  F+   + V ++ + +   F YS    T  
Sbjct: 276 TDLLYKFRETVPEMAIRTTLIVGYPGETEAHFQELKEWVKEMRFERLGCFTYSHEENTHA 335

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR---- 431
            N+ + V + VK ER   + +   +     N   +GQ  +V+I++  KE    +GR    
Sbjct: 336 YNLEDDVPDEVKQERANEIMEIQSQISWELNQQKIGQTFKVIIDR--KEGNYFIGRTEFD 393

Query: 432 SPWLQSVVLNSKNH---NIGDIIKVRITDVKISTLYG 465
           SP + + VL          G+   ++ITD     LYG
Sbjct: 394 SPDVDNEVLIDAAEIYLKTGEYYDIKITDAADFDLYG 430


>gi|332158106|ref|YP_004423385.1| hypothetical protein PNA2_0464 [Pyrococcus sp. NA2]
 gi|331033569|gb|AEC51381.1| hypothetical protein PNA2_0464 [Pyrococcus sp. NA2]
          Length = 429

 Score =  163 bits (413), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 129/447 (28%), Positives = 228/447 (51%), Gaps = 29/447 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + ++++YGC  N  D   M  +    G+E V  +D+++++++N+C +++    K+     
Sbjct: 7   KVYIENYGCARNRADGEIMAALLHLAGHEIVYDLDESEIVIVNSCAVKDPTERKIAR--- 63

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           RIR L    + EG    V+V GC+     E I  R   V+ V+G ++  R+ + +E A  
Sbjct: 64  RIREL----LDEGKK--VIVTGCLPHVNPEVIDER---VSAVLGVKSIDRIVQAVEYAIR 114

Query: 146 GKRVVDTDYSVEDKFER-LSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
           G++++    SV D  +R L  +D      R V   + I EGC   CT+C   + RG+  S
Sbjct: 115 GEKLI----SVPDWRKRNLDKLDLPRLSLRTVYFIVPIAEGCLNACTYCATRFARGVLKS 170

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
            S  ++V+  +  I  G  EI L  ++   +   G D      + LL  ++ I+G  R+R
Sbjct: 171 YSPEKIVEWVKWAIKQGYKEIWLSAEDTGCY---GFDI-GTNLAKLLDEITAIEGEFRIR 226

Query: 265 YTTSHPRDMS---DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
               +P  +    D LI+A+ D D +  +LHLPVQSG + IL+ M R +T  E+ +I++ 
Sbjct: 227 VGMMNPNHVIKFLDELIEAYQD-DKVYKFLHLPVQSGDNEILRRMGRNYTVEEFEEIVNA 285

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
            R   PD+ + +D IVGFPGE+++ F+ +++L+ +I   +    +YSPR GT  +   +Q
Sbjct: 286 FRKKFPDLNLHTDIIVGFPGESEEAFQKSVELIKRIKPDKVNVSRYSPRPGTIAAKW-KQ 344

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           +   +  ER   L +   +     N   +G+ +EVLI   GK KG +   +   + ++L 
Sbjct: 345 LPGWLIKERSRLLHRLRLQISYEINQKYIGRKMEVLIHGEGK-KGNVDAVTMNYKHIILP 403

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                  ++ KV+  +   + L GE+V
Sbjct: 404 KGEKGKFEVAKVK--NATSTYLLGEIV 428


>gi|326802526|ref|YP_004320345.1| ribosomal protein S12 methylthiotransferase rimO [Sphingobacterium
           sp. 21]
 gi|326553290|gb|ADZ81675.1| Ribosomal protein S12 methylthiotransferase rimO [Sphingobacterium
           sp. 21]
          Length = 442

 Score =  163 bits (413), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 128/451 (28%), Positives = 219/451 (48%), Gaps = 37/451 (8%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERV---NSMDDADLIVLNTCHIREKAAEKVYS 82
           R  V + GC  N++DS  +         E V   N++   D++V+NTC   + A ++   
Sbjct: 14  RVNVITLGCSKNIHDSEVLMGQLRGNQMEVVHEANNISKNDIVVINTCGFIDNAKQESID 73

Query: 83  FLGRIRNLKNSRIKEGGDL-LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
            +     L+ S +KE G L  V+V GC+++    E+    P V+   G      L +LL 
Sbjct: 74  TI-----LQYSALKEEGKLEKVIVTGCLSERYKPELETEIPNVDAYFGTND---LQQLLA 125

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
                   V  DY  E   ER+      Y       A+  I EGC++ C+FC +P  RG 
Sbjct: 126 S-------VGADYKHELLGERMLTTPSHY-------AYFKIAEGCNRPCSFCAIPLMRGK 171

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
            IS+ +  +V EA+ L  NG  E+ L+ Q++  + G  L G++   +DLL +LS+++G+ 
Sbjct: 172 HISKPIEDLVSEAKHLAKNGTKELILIAQDL-TYYGLDLYGKR-NLADLLRNLSDVEGIE 229

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
            +R   ++P      ++    +   +  YL +P+Q  +D +LKSM R  T  +   +++ 
Sbjct: 230 WIRLQYAYPSGFPMDVLDVMNERQNICNYLDMPLQHIADNMLKSMRRGITKQKTIDLVNA 289

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           IR   P+IA+ +  I G+PGET+ DF   M+ V++  + +   F YS    T   ++++ 
Sbjct: 290 IRDKVPNIALRTTLICGYPGETEQDFAEMMEWVERTRFDRLGCFTYSHEEKTHAFSLVDD 349

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQS 437
           V +  K  R+  + +  +      N   VG   +VLI++   E+G  +GR    SP + +
Sbjct: 350 VPQEEKESRVEQIMEIQQGISYEINQEKVGNTYKVLIDR--VEEGYFIGRTEYDSPEVDN 407

Query: 438 VVLNSKNHN---IGDIIKVRITDVKISTLYG 465
            VL + N+N   +G  + V I   +   LYG
Sbjct: 408 EVLIAANNNYAAVGRFVDVHIDRAEDFDLYG 438


>gi|11498846|ref|NP_070075.1| hypothetical protein AF1247 [Archaeoglobus fulgidus DSM 4304]
 gi|2649334|gb|AAB89997.1| conserved hypothetical protein [Archaeoglobus fulgidus DSM 4304]
          Length = 405

 Score =  163 bits (413), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 124/425 (29%), Positives = 219/425 (51%), Gaps = 30/425 (7%)

Query: 48  FFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAG 107
           F S  +E ++S++DA+++++N+C + +    K+   + R+ +LK    +EG    VV+AG
Sbjct: 4   FLSGEFE-LSSVEDAEVVIINSCGVIDFTERKI---IRRMLDLK----REGKK--VVLAG 53

Query: 108 CVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVD 167
           C+ +   E +     + +  + P     + + +  A  G+++  T+    DK E   +  
Sbjct: 54  CLTRISKEAL----SVADSALSPDNLDMVVDAVYSALNGRKLF-TERRFIDKAEFSHL-- 106

Query: 168 GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITL 227
                +    A ++I EGC   C+FC   + RG   S S+  +V EA + +  G  EI L
Sbjct: 107 -KCRLRENAIAIVSISEGCLGKCSFCATKFARGRLRSFSMDAIVREAERAVRAGYREIQL 165

Query: 228 LGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD---MSDCLIKAHGDL 284
             Q+  A+   G+D  +    +LL  +SEI+G  R+R    +P+    M D LI A+   
Sbjct: 166 TSQDTGAY---GMDKGRAMLPELLRKISEIEGEFRVRVGMMNPQHAVRMLDELINAYSS- 221

Query: 285 DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETD 344
           + +  +LH+PVQSG +RIL+ M R HT  +Y ++++  R+   D+ IS+D IVGFP ET+
Sbjct: 222 EKIYKFLHIPVQSGDNRILEDMKRNHTVEDYVEVVEAFRNSFDDVLISTDIIVGFPTETE 281

Query: 345 DDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVS 404
           + F  + +L+ +         +YS R GTP +  L  +   +K ER   L   +R+  + 
Sbjct: 282 EAFWKSYELIKETRPDIVNITRYSARKGTPAAR-LRDIPGWIKKERSRKLTDLMRKIGLE 340

Query: 405 FNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLY 464
            N   VG+ + VL+ K GK  G+ + R    ++VV       +G+ ++V+I D + + L 
Sbjct: 341 NNKRFVGKKLRVLVTKEGK-NGRNLARMNSYRAVVTEGA---VGEFVEVKIKDCRFNYLI 396

Query: 465 GELVV 469
           G+L  
Sbjct: 397 GQLAA 401


>gi|167769111|ref|ZP_02441164.1| hypothetical protein ANACOL_00434 [Anaerotruncus colihominis DSM
           17241]
 gi|167668751|gb|EDS12881.1| hypothetical protein ANACOL_00434 [Anaerotruncus colihominis DSM
           17241]
          Length = 441

 Score =  163 bits (413), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 126/443 (28%), Positives = 215/443 (48%), Gaps = 21/443 (4%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N  D+ R+       GYE        D++++NTC   E A  +    +     L
Sbjct: 9   SLGCSKNQVDAERLLAQIEKGGYEICTDASQCDVVIINTCGFIEDAKRESIETI-----L 63

Query: 91  KNSRIKEGGDL-LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149
           + +++K GG L  +VV GC+A+   E++    P  +VV+G      +   +ERA  G++ 
Sbjct: 64  EFAQLKTGGALRALVVTGCLAERYREQVAAEIPEADVVLGIGCNADILGAIERALHGEKT 123

Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209
           V    +  +K E LS+            A+L + EGCD  C++C +P  RG   SR +  
Sbjct: 124 V----AFGEK-EALSLEGERVLANEPYFAYLKVAEGCDNRCSYCAIPLIRGPFRSRPMEN 178

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSH 269
           +V EA++L   GV E+ ++ Q+   + G+ L G +    +LL  L  + G+  +R    +
Sbjct: 179 IVAEAQRLAACGVTELNVVAQDTTRY-GEDLYG-RLALPELLEKLCRLDGVRWVRMLYCY 236

Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329
           P  ++D L+      + ++ Y+ +P+Q  + RIL  MNRR  A     ++++IR+  P +
Sbjct: 237 PDRITDRLLDVMAREEKIVKYMDIPIQHVNGRILSLMNRRGDAGSLTALMEKIRARVPGV 296

Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAE 389
            + +  I GFP ET  +F    + V ++ + +   F YS    TP + M  Q+DE  K  
Sbjct: 297 VLRTTLITGFPTETQGEFEELCEFVQRVRFERLGCFAYSAEEDTPAALMDGQLDEEEKRR 356

Query: 390 RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVLNSKN- 444
           R   + ++       FN + +G+ + V +E  G+E     GRS    P + S V  S + 
Sbjct: 357 RAQIIMEQQYGVMEGFNRSQIGRRLTVAVE--GREGRLWYGRSYMDAPDIDSRVYFSGHG 414

Query: 445 -HNIGDIIKVRITDVKISTLYGE 466
            ++ GD I+V I  V+   L G+
Sbjct: 415 PYSPGDYIEVEIDGVEGYDLKGK 437


>gi|110635718|ref|YP_675926.1| MiaB-like tRNA modifying enzyme [Mesorhizobium sp. BNC1]
 gi|110286702|gb|ABG64761.1| MiaB-like tRNA modifying enzyme [Chelativorans sp. BNC1]
          Length = 426

 Score =  163 bits (413), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 126/434 (29%), Positives = 203/434 (46%), Gaps = 34/434 (7%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V ++GC++N Y+S  +     + G     S  +   +++NTC +  +A  +         
Sbjct: 5   VLTFGCRLNAYESEVIRREAEAAGL----SALEGGAVIVNTCAVTAEAVRQARQ------ 54

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG------PQTYYRLPELLER 142
                  +E  D  ++V GC AQ E          V++V+G        +Y  LP+    
Sbjct: 55  -AIRRARRENPDARIIVTGCAAQTE-PGTFGSMEEVDLVLGNEEKLKAHSYRALPDFGVN 112

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            +F K  V+    V +    +  VD    R R   AF+ +Q GCD  CTFC++PY RG  
Sbjct: 113 -QFEKVRVNDIMEVRETASHM--VDAIEGRAR---AFVQVQNGCDHRCTFCIIPYGRGNS 166

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            S  +  VVD+ R+L++NG  E+ L G ++ ++ G  L G       +   L+++  L R
Sbjct: 167 RSVPMGAVVDQVRRLVENGYAEVVLTGVDLTSF-GADLPGSPRLGKLVRTILAQVPDLKR 225

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LR ++    +    L++A  +   LMP+LHL +Q+G D ILK M RRH   +  +  D +
Sbjct: 226 LRLSSIDSIEADQDLMRALAEEARLMPHLHLSLQAGDDMILKRMKRRHLRADSIRFCDEV 285

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R +R DI   +D I GFP ET+  F  ++ +V++ G      F +SPR GTP S M  Q+
Sbjct: 286 RRLRTDIVFGADIIAGFPTETEAMFENSLRIVEECGLTHLHVFPFSPRKGTPASRM-PQL 344

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
             N   ER   L+            +  G    VL+E+ G      +GR+     V +  
Sbjct: 345 PRNTVKERAARLRAAGDAAYARHLASLEGTRQRVLVEREG------LGRTEGFTLVAV-- 396

Query: 443 KNHNIGDIIKVRIT 456
           +    G+I++  IT
Sbjct: 397 EGGKPGEIVESLIT 410


>gi|83720372|ref|YP_442780.1| ribosomal protein S12 methylthiotransferase [Burkholderia
           thailandensis E264]
 gi|257138990|ref|ZP_05587252.1| putative tRNA modifying protein [Burkholderia thailandensis E264]
 gi|123753779|sp|Q2SWB9|RIMO_BURTA RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|83654197|gb|ABC38260.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Burkholderia
           thailandensis E264]
          Length = 463

 Score =  163 bits (412), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 128/465 (27%), Positives = 213/465 (45%), Gaps = 50/465 (10%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC   + DS ++     ++GYE   + D ADL+V+NTC   ++A ++    +G     
Sbjct: 21  SLGCPKALVDSEQIITQLRAEGYEISGTYDGADLVVVNTCGFIDEAVQESLDAIGEA--- 77

Query: 91  KNSRIKEGGDLLVVVAGCVA---QAEGEEILRR-SPIVNVVVGPQTYYRLPELLERARFG 146
               + E G   V+V GC+     A G  ++    P V  V GP     + +++  +   
Sbjct: 78  ----LAENGK--VIVTGCLGAKKSASGSGLIEEVHPKVLAVTGPHAVGEVMQVV-HSHLP 130

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           K          D F  L +   G        A+L I EGC+  C+FC++P  RG  +SR 
Sbjct: 131 KP--------HDPFVDL-VPAAGIKLTPRHYAYLKISEGCNHRCSFCIIPSMRGDLVSRP 181

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYSLS 255
           +++V+ EA  L   GV E+ ++ Q+ +A           W G+ L   K   ++L+ +L 
Sbjct: 182 VAEVMLEAENLFKAGVKELLVISQDTSAYGVDVKYRTGFWNGRPL---KTRMTELVGALG 238

Query: 256 EIKG----LVRLRYTTSHPRDMSDCLIKAHGDLD-VLMPYLHLPVQSGSDRILKSMNRRH 310
           E+       VRL Y   +P       + A G L   ++PYL +P Q     +LK M R  
Sbjct: 239 ELAAQYGAWVRLHYVYPYPHVDEIIPMMAQGPLKGHVLPYLDVPFQHAHPDVLKRMKRPA 298

Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370
            A +  + + R R + PD+ I S FI GFPGET+  F   +D + +    +   F YSP 
Sbjct: 299 NAEKVLERVQRWREICPDLTIRSTFIAGFPGETEAQFETLLDFIREAELDRVGCFAYSPV 358

Query: 371 LGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKL 428
            G   + +   + ++V+  R     +   E   +  +  VG+ ++VLI++  +E   G+ 
Sbjct: 359 EGASANELDGALPDDVREARRARFMEVAEEVSAARIERKVGKTLKVLIDEVNEEGGIGRT 418

Query: 429 VGRSPWLQSVVL------NSKNHNIGDIIKVRITDVKISTLYGEL 467
              +P +  VV        SK + +GD + V+IT      L+GE+
Sbjct: 419 AADAPEIDGVVYVEPAAKASKRYKVGDFVSVKITGADGHDLWGEV 463


>gi|282163181|ref|YP_003355566.1| putative 2-methylthioadenine synthetase [Methanocella paludicola
           SANAE]
 gi|282155495|dbj|BAI60583.1| putative 2-methylthioadenine synthetase [Methanocella paludicola
           SANAE]
          Length = 406

 Score =  163 bits (412), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 133/451 (29%), Positives = 212/451 (47%), Gaps = 56/451 (12%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + +++++GC  N  DS  + +   + G E V + ++AD +V+NTC + E  ++   S L 
Sbjct: 2   KIYIETHGCTANASDSQAIRNSVLASGGEVVGTPEEADTVVVNTCAVTEFTSK---SMLK 58

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            I+     R        VVVAGC+A A+                       P LL+  R 
Sbjct: 59  AIKKYSGKR--------VVVAGCMAAAQ-----------------------PYLLKGIRN 87

Query: 146 GKRVVDTDYSVEDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            +  +      E     L I+   G    +G +A ++I EGC   C++C+V   RG   S
Sbjct: 88  IQ--IAEAPGAEAVARMLGIMPAAGRPFIKGTSAVVSIAEGCRGHCSYCIVRLVRGPLRS 145

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRL 263
             + +VV   +  +  G  EI L  Q+  A+   GLD GE+     L+  +  I+G  R+
Sbjct: 146 APVEEVVHSIKTALRMGAREILLTAQDTGAY---GLDAGER--LPALMKEILSIEGDYRI 200

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLM--P----YLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
           R    +P  ++D L    GD+  +   P    + H+PVQSGSDRIL  M R +T  +YR 
Sbjct: 201 RLGMMNPFSIADIL----GDMARIFNDPRVYRFAHIPVQSGSDRILGLMERPYTESQYRD 256

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
           I+ R+R   P I +S+D+IVGFP ETD+DF  TMD +      +    ++SPR GTP + 
Sbjct: 257 IVARLRQEVPGITLSTDYIVGFPTETDEDFALTMDDLRSTRPLKVNITRFSPRPGTPAAC 316

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQS 437
           M E +   +K ER   L +        +     G+ + VL+ + GK  G  V R      
Sbjct: 317 M-ENLPFRIKKERSRALTQLHHGITSEYMRDSAGRRLSVLVTEEGK-PGTSVARDDCYHM 374

Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           VV+  +  + G  + V+I     + + G+ +
Sbjct: 375 VVI-PEEISPGTRLDVKICGASTTYMVGKPI 404


>gi|323700753|ref|ZP_08112665.1| RNA modification enzyme, MiaB family [Desulfovibrio sp. ND132]
 gi|323460685|gb|EGB16550.1| RNA modification enzyme, MiaB family [Desulfovibrio desulfuricans
           ND132]
          Length = 449

 Score =  163 bits (412), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 118/393 (30%), Positives = 187/393 (47%), Gaps = 28/393 (7%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           F   + GC++N Y++  + + +  +    V+    ADLI++N+C +    A  V      
Sbjct: 4   FHTATLGCKINQYETRSIAEAWTGRSAVEVDDPRAADLILVNSCAV---TANAVADLRQA 60

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           +R       + G    ++V GC AQ   EE+ +   +V VV        L          
Sbjct: 61  VRRFHRDNPEAG----IIVTGCAAQVMPEELAQLPGVVRVVSQADKARLLDGPGLDGPGL 116

Query: 147 KRV---VDTDYSVEDK-----FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
             +    + D +V DK     F   SI   GY R R V   + +Q+GC  FCT+C+VP T
Sbjct: 117 GSLEASPNLDGNVPDKAEGVRFAPFSIT--GYGRARAV---VKVQDGCSHFCTYCIVPLT 171

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL---- 254
           RG  +SR  ++V  E  +L+  G  E  L G N+  + G+ L G K  F DL+  L    
Sbjct: 172 RGRSVSRDPAEVEGEVARLLGAGFREFILSGINLRHF-GRDLPG-KPDFWDLVARLETNF 229

Query: 255 -SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
             E  G  RLR ++  P  ++D  +   G   ++ P LHL +QSG   +LK+M R H + 
Sbjct: 230 APEWTGRARLRISSVEPGQLTDKALDVLGASRLVCPQLHLSLQSGDPDVLKAMGRGHYSP 289

Query: 314 EYR-QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
           +     +DR+++  P + + +D I GFPGET++ F  T+DL   +       F YS R G
Sbjct: 290 QSAVDFMDRLKAFWPVMGLGADLITGFPGETEERFEHTLDLCRALPLTYGHVFPYSERPG 349

Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSF 405
           T   ++   VD  V+ ER   L+K +  ++ +F
Sbjct: 350 TRAVDLPGAVDVPVRKERAARLRKLVGRKKAAF 382


>gi|149045301|gb|EDL98387.1| CDK5 regulatory subunit associated protein 1-like 1 (predicted),
           isoform CRA_d [Rattus norvegicus]
          Length = 520

 Score =  163 bits (412), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 125/457 (27%), Positives = 217/457 (47%), Gaps = 41/457 (8%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           Q+ +++++GC  N  D   M     + GY+   +  DADL +LN+C ++  A +    F 
Sbjct: 63  QKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAED---HFR 119

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             I+       K      VV+AGCV QA+  +   +      ++G Q   R+ E++E   
Sbjct: 120 NSIKKAHEENKK------VVLAGCVPQAQPRQDYLKG---LSIIGVQQIDRVVEVVEETI 170

Query: 145 FGKRVVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            G  V       E   +RL  + +D    RK  +   ++I  GC   CT+C   + RG  
Sbjct: 171 KGHSVRLLGQKKESG-KRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNL 229

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-RGKGLDGEKCTFSDLLYSLSEI---- 257
            S  + ++V+ A++    GVCEI L  ++  A+ R  G D        LL+ L E+    
Sbjct: 230 ASYPIDELVERAKQSFQEGVCEIWLTSEDTGAYGRDIGTD-----LPTLLWKLVEVIPEG 284

Query: 258 ----KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
                G+    Y   H  +M+  L     +   +  +LH+PVQS SD +L  M R +   
Sbjct: 285 AMLRLGMTNPPYILEHLEEMAKIL-----NHPRVYAFLHIPVQSASDSVLMDMKREYCVA 339

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
           ++++++D ++   P I I++D I GFPGETD DF+ T+ LV++  +   F  ++ PR GT
Sbjct: 340 DFKRVVDFLKEKVPGITIATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGT 399

Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFN--DACVGQIIEVLIEKHGKEKGKLVGR 431
           P +   +QV  +VK +R   L +       S+N  D  +G+  +VL+ +   +    V  
Sbjct: 400 PAAKA-KQVPAHVKKQRTKDLSRVFH----SYNPYDHKIGERQQVLVTEESFDSKFYVAH 454

Query: 432 SPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           + + + V++      +G +++V I +     L G+ V
Sbjct: 455 NRFYEQVLVPKNPAFMGKMVEVDIYESGKHFLKGQPV 491


>gi|260574290|ref|ZP_05842295.1| MiaB-like tRNA modifying enzyme [Rhodobacter sp. SW2]
 gi|259023756|gb|EEW27047.1| MiaB-like tRNA modifying enzyme [Rhodobacter sp. SW2]
          Length = 416

 Score =  163 bits (412), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 116/356 (32%), Positives = 174/356 (48%), Gaps = 34/356 (9%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  M+++  S G +          +V+NTC +  +A  K       IR L
Sbjct: 8   TLGCRLNAYETEAMKELAASAGVQ--------GAVVVNTCAVTAEAVRKAKQ---EIRRL 56

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG------PQTYYRL-PELLERA 143
                +E     ++V GC AQ E        P V  VVG        T+  L P+L+   
Sbjct: 57  A----RENPGAAIIVTGCAAQTE-PATFAAMPEVTRVVGNAEKMQASTWAGLAPDLIG-- 109

Query: 144 RFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
              +RV VD   SV +    L  +DG + R R   A+  +Q GCD  CTFC++PY RG  
Sbjct: 110 -ITERVQVDDIMSVRETAGHL--IDG-FGRHR---AYFQVQNGCDHRCTFCIIPYGRGNS 162

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            S     VV++ ++L+D G  E+ L G ++ +W G  L G       +L  L  +  L R
Sbjct: 163 RSVPAGVVVEQIKRLVDKGFQEVVLTGVDLTSW-GADLPGTPALGDLVLRILRLVPDLPR 221

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LR ++    ++   L+ A      LMP+LHL +Q+G D ILK M RRH   +  +  +  
Sbjct: 222 LRISSIDSIEVDGALMDAIAGEQRLMPHLHLSLQAGDDLILKRMKRRHLRDDAIRFCNEA 281

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           R +RPD+   +D I GFP ET+  F+ ++DLV   G      F +S R GTP + M
Sbjct: 282 RRLRPDMVFGADIIAGFPTETEAMFQRSLDLVADCGLTFLHVFPFSARKGTPAARM 337


>gi|238018965|ref|ZP_04599391.1| hypothetical protein VEIDISOL_00825 [Veillonella dispar ATCC 17748]
 gi|237864449|gb|EEP65739.1| hypothetical protein VEIDISOL_00825 [Veillonella dispar ATCC 17748]
          Length = 453

 Score =  163 bits (412), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 111/375 (29%), Positives = 189/375 (50%), Gaps = 14/375 (3%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA-AEKVYSFLGRIRN 89
           S GC  N+ D+  M  +    GY     + +ADLIV+NTC   EKA AE + + L   + 
Sbjct: 14  SLGCAKNLVDTEVMLGLLKDNGYTITEDLSEADLIVVNTCTFIEKAKAESINTILEVAQY 73

Query: 90  LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149
            ++ + K      ++VAGC++Q   +E+ +  P ++ ++G   + ++   ++    G R 
Sbjct: 74  KEDGKCKG-----LIVAGCLSQQYQDELFQEIPEIDALIGTGAWDQIMVAVDAIEHGNRS 128

Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209
              +       ER+  +          +A++ I EGC+  CTFC++P  RG   SR++  
Sbjct: 129 CIMENITNIYDERMPRI----QTTPRYSAYVKIAEGCNNGCTFCIIPKVRGAFRSRTIES 184

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSH 269
           +  E  +L  +GV E+ L+ Q+  ++ G  L+  K   + LL  L+ ++G+  +R    +
Sbjct: 185 IKAEVERLAASGVKEVVLIAQDTTSY-GIDLNDGKPLLTTLLKELTAVEGIEWIRMLYLY 243

Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329
           P   SD L+    +   L  Y+ +P+Q  ++ ILK MNRR    +  +++ +IR+    I
Sbjct: 244 PTFFSDELLDIIVNEPKLCKYVDIPLQHVNNDILKQMNRRDDRNDIERLLKKIRNAPTHI 303

Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAE 389
            + +  IVGFPGETD+ F    D V +I +     F YS   GTP     +QV E VK E
Sbjct: 304 TLRTSIIVGFPGETDEQFEELCDFVKEIKFDNMGVFTYSQEEGTPAGAREDQVPEEVKEE 363

Query: 390 R---LLCLQKKLREQ 401
           R   L+ +Q  + E+
Sbjct: 364 RYHVLMSIQAAISEE 378


>gi|167619848|ref|ZP_02388479.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Burkholderia
           thailandensis Bt4]
          Length = 463

 Score =  163 bits (412), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 128/465 (27%), Positives = 213/465 (45%), Gaps = 50/465 (10%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC   + DS ++     ++GYE   + D ADL+V+NTC   ++A ++    +G     
Sbjct: 21  SLGCPKALVDSEQIITQLRAEGYEISGTYDGADLVVVNTCGFIDEAVQESLDAIGEA--- 77

Query: 91  KNSRIKEGGDLLVVVAGCVA---QAEGEEILRR-SPIVNVVVGPQTYYRLPELLERARFG 146
               + E G   V+V GC+     A G  ++    P V  V GP     + +++  +   
Sbjct: 78  ----LAENGK--VIVTGCLGAKKSASGSGLIEEVHPKVLAVTGPHAVGEVMQVV-HSHLP 130

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           K          D F  L +   G        A+L I EGC+  C+FC++P  RG  +SR 
Sbjct: 131 KP--------HDPFVDL-VPAAGIKLTPRHYAYLKISEGCNHRCSFCIIPSMRGDLVSRP 181

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYSLS 255
           +++V+ EA  L   GV E+ ++ Q+ +A           W G+ L   K   ++L+ +L 
Sbjct: 182 VAEVMLEAENLFKAGVKELLVISQDTSAYGVDVKYRTGFWNGRPL---KTRMTELVGALG 238

Query: 256 EIKG----LVRLRYTTSHPRDMSDCLIKAHGDLD-VLMPYLHLPVQSGSDRILKSMNRRH 310
           E+       VRL Y   +P       + A G L   ++PYL +P Q     +LK M R  
Sbjct: 239 ELAAQYGAWVRLHYVYPYPHVDEIIPMMAQGPLKGHVLPYLDVPFQHAHPDVLKRMKRPA 298

Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370
            A +  + + R R + PD+ I S FI GFPGET+  F   +D + +    +   F YSP 
Sbjct: 299 NAEKVLERVQRWREICPDLTIRSTFIAGFPGETEAQFETLLDFIREAELDRVGCFAYSPV 358

Query: 371 LGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKL 428
            G   + +   + ++V+  R     +   E   +  +  VG+ ++VLI++  +E   G+ 
Sbjct: 359 EGASANELDGALPDDVREARRARFMEVAEEVSAARIERKVGKTLKVLIDEVNEEGGIGRT 418

Query: 429 VGRSPWLQSVVL------NSKNHNIGDIIKVRITDVKISTLYGEL 467
              +P +  VV        SK + +GD + V+IT      L+GE+
Sbjct: 419 AADAPEIDGVVYVEPAAKASKRYKVGDFVSVKITGADGHDLWGEV 463


>gi|156382226|ref|XP_001632455.1| predicted protein [Nematostella vectensis]
 gi|156219511|gb|EDO40392.1| predicted protein [Nematostella vectensis]
          Length = 555

 Score =  163 bits (412), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 133/475 (28%), Positives = 218/475 (45%), Gaps = 60/475 (12%)

Query: 18  VDQCIVP--QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREK 75
           V   I+P  Q  +V+++GC  N  DS  M     + GY+  +    ADL +LN+C ++  
Sbjct: 53  VGDSIIPGTQTIYVRTWGCSHNNSDSEYMAGQLAAYGYKITDDEQCADLWLLNSCTVKSP 112

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNV-VVGPQTYY 134
           A +    F   I+  K     +G  L  VVAGCV Q +     R   +  + VVG Q   
Sbjct: 113 AED---GFRNAIKKAK----AQGKHL--VVAGCVPQGQP----RHDTVKGISVVGVQQID 159

Query: 135 RLPELLERAR-------FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCD 187
           R+ E++E          FG++  D   +     +   I      RK  +   + I  GC 
Sbjct: 160 RVVEVVEETLKGHTVRLFGQKKADGKKTGGASLDLPKI------RKNPLVEIIAINTGCL 213

Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTF 247
             CT+C   + RG   S    ++V+ A++  + GV E+ L  ++  A+ GK +     T 
Sbjct: 214 NQCTYCKTKHARGDLGSYPPEEIVNRAKQAFNEGVVEMWLTSEDTGAY-GKDIG---VTL 269

Query: 248 SDLLYSLSEIK--------GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
            +LL+ L ++         G+    Y   H  +M+  L     +   +  +LH+PVQS S
Sbjct: 270 PELLWQLVKVIPEGGRMRIGMTNPPYILEHLEEMAKIL-----NHPRVYSFLHVPVQSAS 324

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
             +L  M R + A ++  +++ +R   PD+ I++D I GFP ET+DDF+ T+DLV K  +
Sbjct: 325 TNVLADMKREYIAEDFEHVVNYLRQRVPDLTIATDLICGFPTETEDDFQKTLDLVKKYKF 384

Query: 360 AQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLRE-----QQVSFNDACVGQII 414
              F  ++ PR GTP + M     E VK        ++ RE     Q  +  D  VG + 
Sbjct: 385 PSLFINQFYPRPGTPAARMKRLPTEEVK--------RRTREVSKLFQSYTTYDHKVGAVQ 436

Query: 415 EVLIEKHGKEKGKLVGRS-PWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           EVL+ +   +    VG +  + Q +V   +   +G I+KV +T      L G ++
Sbjct: 437 EVLVTEESHDGVHYVGHNKAYDQVLVKKDEGELMGKIVKVEMTSSGKHYLMGRVM 491


>gi|298479874|ref|ZP_06998074.1| 2-methylthioadenine synthetase [Bacteroides sp. D22]
 gi|298274264|gb|EFI15825.1| 2-methylthioadenine synthetase [Bacteroides sp. D22]
          Length = 439

 Score =  163 bits (412), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 122/447 (27%), Positives = 221/447 (49%), Gaps = 31/447 (6%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N  ++  +  +    G       + AD+ V+NTC + E A +K    + R+   
Sbjct: 16  TLGCKLNFSETSTIGKILREAGVRTARKGEKADICVVNTCSVTEMADKKCRQAIHRL--- 72

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL---ERARFGK 147
               +K+  D  VVV GC AQ +  ++ +    V+VV+G +    L + L   ++   G+
Sbjct: 73  ----VKQHPDAFVVVTGCYAQLKPGDVAKIDG-VDVVLGAEQKGELLQYLGDLQKHEKGE 127

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
            +  T   +       S  D    R R    FL +Q+GCD FC++C +P+ RG   + ++
Sbjct: 128 AITTTTKDIRSFSPSCSRGD----RTR---FFLKVQDGCDYFCSYCTIPFARGRSRNGTI 180

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
           + +V++AR+    G  EI L G N+  + GK   GE  +F DL+ +L +++G+ R R ++
Sbjct: 181 ASMVEQARQAAAEGGKEIVLTGVNIGDF-GK-TTGE--SFFDLVKALDQVEGIERYRISS 236

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
             P  ++D +I+        MP+ H+P+QSG D +L+ M RR+    +   + +I+ V P
Sbjct: 237 IEPNLLTDEIIEFVSHSRSFMPHFHIPLQSGCDEVLQLMRRRYDTALFASKVKKIKEVMP 296

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG---SNMLEQVDE 384
           D  I  D IVG  GET + F      +D +   Q   F YS R GT       ++   ++
Sbjct: 297 DAFIGVDVIVGTRGETPEYFEQAYQFIDGLDVTQLHVFSYSERPGTQALKIEYVVSPEEK 356

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
           + +++RLL L     ++  +F    +GQ + VL+EK  K    + G +     V + S +
Sbjct: 357 HQRSQRLLALSD---QKTQAFYARHIGQTMPVLMEK-SKAGAPMHGFTENYIRVEVESDD 412

Query: 445 HNIGDIIKVRITDV--KISTLYGELVV 469
                ++ VR+ +   +++ L G +++
Sbjct: 413 SLDNQVVNVRLGEFNEEMAALKGTILI 439


>gi|332141284|ref|YP_004427022.1| MiaB-like tRNA modifying enzyme YliG [Alteromonas macleodii str.
           'Deep ecotype']
 gi|238065285|sp|B4RYE6|RIMO_ALTMD RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|327551306|gb|AEA98024.1| MiaB-like tRNA modifying enzyme YliG [Alteromonas macleodii str.
           'Deep ecotype']
          Length = 485

 Score =  163 bits (412), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 128/413 (30%), Positives = 198/413 (47%), Gaps = 38/413 (9%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ DS R+     ++GY+ V + +DADL+++NTC   + A E+    +G     
Sbjct: 43  SLGCPKNLVDSERILTQLRTEGYDVVPTYNDADLVIVNTCGFIDAAVEESLDTIGEA--- 99

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               +KE G   V+V GC+   E +EI    P V  + GP  Y  + E +       +  
Sbjct: 100 ----LKENGK--VIVTGCLGVKE-DEIRELHPNVLAITGPHAYETVVEQVHEHLPKPQ-- 150

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
                  + F  L I D G        A+L I EGC+  CTFC++P  RG  +SR +  V
Sbjct: 151 ------HNPFADL-IPDHGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGDLVSRPVGNV 203

Query: 211 VDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYSLSEIKG 259
           +DEA++L + GV E+ ++ Q+ +A           W G  +   K     L   L E+  
Sbjct: 204 LDEAKRLKEAGVKELLVISQDTSAYGVDVKHRTGFWNGMPV---KTHMQQLCEQLGEMGI 260

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
            VRL Y   +P    D LI    D  +L PYL +P Q  + RIL+ M R  +A    + +
Sbjct: 261 WVRLHYVYPYPH--VDDLIPLMNDGKIL-PYLDIPFQHANKRILRLMKRPGSAERVLERV 317

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            + R   P + I S FIVGFPGET+++F   +D + +    +  +F YSP  G   +++ 
Sbjct: 318 KKWREQCPSLVIRSTFIVGFPGETEEEFEELLDFLREAQLDRVGAFAYSPVEGARANDLP 377

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS 432
           + V E++K ERL    +   E   +   A +G   +V+I+    E    VGR+
Sbjct: 378 DPVPEDIKQERLARFMEVQGEISAARLKARIGNEYQVVIDSVDAEGA--VGRT 428


>gi|266621755|ref|ZP_06114690.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Clostridium hathewayi DSM
           13479]
 gi|288866581|gb|EFC98879.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Clostridium hathewayi DSM
           13479]
          Length = 320

 Score =  163 bits (412), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 94/278 (33%), Positives = 156/278 (56%), Gaps = 10/278 (3%)

Query: 153 DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVD 212
           D S   ++E L+I    +       AF+ + +GC++FC++C++PYTRG   SR +  V  
Sbjct: 7   DISAAKEYEALTI----HKIADHTRAFIKVTDGCNQFCSYCIIPYTRGRVRSRRMEDVRA 62

Query: 213 EARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
           E  +L+  G  EI L G +++++     + E+ T  DL+  L E+ GL+R+R  +  PR 
Sbjct: 63  EVERLVAGGYKEIVLTGIHLSSYGVDFREEERRTLLDLIVYLHEVDGLLRIRLGSLEPRI 122

Query: 273 MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAIS 332
           ++    +A   L  + P+ HL +QSG D  L  MNR +T  +Y +  D +R+   + AI+
Sbjct: 123 ITKEFAEALAALPKVCPHFHLSLQSGCDATLARMNRHYTTADYLERCDILRAAFDNPAIT 182

Query: 333 SDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER-- 390
           +D IVGFPGET ++F+ T   +  + + +   FKYS R GT  + M +QV E VK ER  
Sbjct: 183 TDVIVGFPGETGEEFQTTEAFLRTVHFYEMHVFKYSRREGTRAAVMPDQVPEPVKTERSG 242

Query: 391 -LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK 427
            LL L+K +    + +    +G++ EVL+E+  +  G+
Sbjct: 243 VLLSLEKIM---SLEYRKQFLGKMTEVLMEEEFEWDGR 277


>gi|194334590|ref|YP_002016450.1| RNA modification enzyme, MiaB family [Prosthecochloris aestuarii
           DSM 271]
 gi|194312408|gb|ACF46803.1| RNA modification enzyme, MiaB family [Prosthecochloris aestuarii
           DSM 271]
          Length = 452

 Score =  163 bits (412), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 125/405 (30%), Positives = 202/405 (49%), Gaps = 32/405 (7%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
            F  + GC++N  ++  + + F   G+   +  +  D++V++TC +  +A +K    + R
Sbjct: 11  IFAVTLGCKLNYAETSSILERFVKCGWRIASKDEQPDVVVVHTCAVTGQAEQKSRQQIRR 70

Query: 87  -IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            IR    SRI        VV GC AQ   E I      V+V++G +  + + +       
Sbjct: 71  MIRTYPASRI--------VVIGCYAQLSPERI-ENIEGVDVILGSKGKFDIEKYCAAEET 121

Query: 146 GKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVT-AFLTIQEGCDKFCTFCVVPYTRGIEI 203
           G  + V    S+       S+++    R+ G + AFL IQ+GCD  C +C +P  RG  +
Sbjct: 122 GVFIDVAPVASIASPVPAHSLIE---KREMGRSRAFLKIQDGCDYGCGYCAIPLARGRSL 178

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           S     V+D AR L   G CEI L G N+ A+R   LD     F+ LL  L ++  + R+
Sbjct: 179 SIDPDVVLDGARALAGAGYCEIVLTGVNIAAYRFGELD-----FAGLLRLLDQVD-VQRI 232

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI- 322
           R ++  P  ++D LI        +MP+ HLP+Q GSD +L+SM RR+T   YR   DR+ 
Sbjct: 233 RVSSIEPDCLTDELIDVVASSQRIMPHFHLPLQGGSDVVLRSMARRYTTAYYR---DRLF 289

Query: 323 RSVR--PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP-----G 375
           R+VR     A+ +D + G+PGET +DF++  D +  +  A    F  S R GT       
Sbjct: 290 RAVRRISGCAVGADVMTGYPGETGEDFQSAYDFIASLPLAYLHIFTCSIRPGTALARQVQ 349

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
           S + + V  ++   R   L++    ++  F  +CVG+ + VLIE+
Sbjct: 350 SGLRQPVAHDIVRHRSRLLRELGERKKREFLASCVGREVNVLIEE 394


>gi|189463972|ref|ZP_03012757.1| hypothetical protein BACINT_00307 [Bacteroides intestinalis DSM
           17393]
 gi|189438545|gb|EDV07530.1| hypothetical protein BACINT_00307 [Bacteroides intestinalis DSM
           17393]
          Length = 439

 Score =  163 bits (412), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 114/393 (29%), Positives = 200/393 (50%), Gaps = 22/393 (5%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N  ++  +  +    G       + AD+ V+NTC + E A +K    + R+   
Sbjct: 16  TLGCKLNFSETSTIGKILREAGVRTARKGEKADICVVNTCSVTEVADKKCRQAIHRL--- 72

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               +K+     VVV GC AQ + E + +    V+VV+G +    L + L   +  +   
Sbjct: 73  ----VKQHPGAFVVVTGCYAQLKPETVAKIEG-VDVVLGAEQKKDLLQYLGNLQKNESGE 127

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
               +++D          G +R R    FL +Q+GCD +C++C +P+ RG   + +++ +
Sbjct: 128 AYASALKDIHSFAPSCSRG-DRTR---YFLKVQDGCDYYCSYCTIPFARGRSRNGTVASM 183

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270
           V++AR+    G  EI L G N+  + GK   GE  TF DL+ +L E++G+ R R ++  P
Sbjct: 184 VEQARQAAAEGGKEIVLTGVNIGDF-GKST-GE--TFFDLVKALDEVEGIERYRISSIEP 239

Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330
             ++D +I+        MP+ H+P+QSGSD +LK M RR+    +   + R++ + PD  
Sbjct: 240 NLLTDEIIEFVSHSRSFMPHFHIPLQSGSDDVLKLMRRRYDTELFASKVQRVKEMMPDAF 299

Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG---SNMLEQVDENVK 387
           I  D IVG  GETD+ F    + +  +   Q   F YS R GT      +++   +++ +
Sbjct: 300 IGVDVIVGTRGETDEYFEQAYEFIKSLDVTQLHVFSYSERPGTQALKIDHVVTPEEKHRR 359

Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
           ++RLL L     E+  +F    +GQ + VL+E+
Sbjct: 360 SQRLLELSD---EKTHAFYARYIGQTMPVLLER 389


>gi|153871438|ref|ZP_02000608.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Beggiatoa sp. PS]
 gi|152072092|gb|EDN69388.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Beggiatoa sp. PS]
          Length = 190

 Score =  163 bits (412), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 82/182 (45%), Positives = 120/182 (65%), Gaps = 1/182 (0%)

Query: 287 LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDD 346
           L+ +LHLPVQSGSDRIL  M R HT  EY+Q + R+R VRPDI++SSDFI+GFPGET+ D
Sbjct: 4   LVSHLHLPVQSGSDRILSLMKRGHTILEYKQKVRRLREVRPDISLSSDFIIGFPGETEAD 63

Query: 347 FRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFN 406
           F+ATM L++++ +  +FSF YSPR GT    M  QV   +K +RL  LQ +L E   + +
Sbjct: 64  FQATMQLIEELRFDHSFSFMYSPRPGTAAVTMPNQVPLEIKKQRLAQLQARLTEIAQTIS 123

Query: 407 DACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYG 465
            + +G +  +L+E    K   +L GR+   + V   +++  IG +++VRIT+   ++L G
Sbjct: 124 HSMLGTVQRILVEHPSRKNPNQLAGRTENNRVVNFTAEHSLIGQLVEVRITEALPNSLRG 183

Query: 466 EL 467
           EL
Sbjct: 184 EL 185


>gi|298209270|ref|YP_003717449.1| putative Fe-S oxidoreductase [Croceibacter atlanticus HTCC2559]
 gi|83849197|gb|EAP87066.1| putative Fe-S oxidoreductase [Croceibacter atlanticus HTCC2559]
          Length = 435

 Score =  163 bits (412), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 131/454 (28%), Positives = 228/454 (50%), Gaps = 45/454 (9%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEK-VYSFLGRI 87
           V + GC  NVYDS  +     +   + V+  ++ +++V+NTC   + A E+ V + L  +
Sbjct: 13  VITLGCSKNVYDSEVLMGQLKANNKDVVHE-EEGNVVVINTCGFIDNAKEQSVNTILDAV 71

Query: 88  RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147
           +  +   I +     V V GC+++    ++ +  P V+   G      LP LL       
Sbjct: 72  KQKEEGIIDK-----VFVTGCLSERYKPDLQKDIPEVDQYFGTT---ELPSLL------- 116

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
           + +  DY  E   ER++     Y       A+L I EGCD+ C+FC +P  RG   S  +
Sbjct: 117 KALGADYKHELVGERVTTTPKNY-------AYLKIAEGCDRPCSFCAIPLMRGKHRSTPI 169

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGL--VRLR 264
             +V +A+ L  NGV E+ L+ Q++  +   GLD  +K   ++LL  L +++G+  +RL 
Sbjct: 170 EDIVADAKSLAANGVKELILIAQDLTYY---GLDLYKKRNLAELLRELVKVEGIEWIRLH 226

Query: 265 YT--TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           Y   T  P D+ D +     +   +  YL +P+Q  SD+ILKSM R  T  +  +++   
Sbjct: 227 YAFPTGFPMDVLDVM----NEEPKICNYLDIPLQHISDKILKSMRRGTTQEKTTKLLKEF 282

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+  P +AI +  IVG+PGET++DF+     V  + + +   F YS    T   N+ + V
Sbjct: 283 RAKVPTMAIRTTLIVGYPGETEEDFQILKQWVKDMRFERLGCFTYSHEENTHAYNLEDDV 342

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQS- 437
            E+VK +R   + +   +     N   +G+  +V+I++  KE G  VGR    SP + + 
Sbjct: 343 PEDVKQDRANQIMEIQGQISWELNQQHIGKEFKVVIDR--KEGGYFVGRTEFDSPDVDNE 400

Query: 438 VVLNSKNHNI--GDIIKVRITDVKISTLYGELVV 469
           V+++++ H +   + + V+IT+     LY E V+
Sbjct: 401 VLIDAEKHYLKTAEFVTVKITEASDFDLYAEPVI 434


>gi|282878890|ref|ZP_06287654.1| MiaB-like protein [Prevotella buccalis ATCC 35310]
 gi|281298889|gb|EFA91294.1| MiaB-like protein [Prevotella buccalis ATCC 35310]
          Length = 432

 Score =  163 bits (412), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 124/453 (27%), Positives = 215/453 (47%), Gaps = 45/453 (9%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEK-VYSFLGRI 87
           + GC  N+ DS  +   F + GY+  +  +  D ++ V+NTC   E A E+ + + L  +
Sbjct: 10  TMGCSKNLVDSETLMKQFEANGYDCTHDSEQPDGEIAVINTCGFIETAKEESINTILQFV 69

Query: 88  RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF-- 145
              K  R+ +     + V GC+++    E+    P V+   G   Y +L   L +A    
Sbjct: 70  EAKKEGRLNK-----LFVMGCLSERYKNELENEIPEVDKFYGKFNYKQLLADLGKAEIKA 124

Query: 146 --GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             G+R + T                         A++ I EGCD+ C +C +P   G  +
Sbjct: 125 CSGQRHLTTPAHY---------------------AYIKIAEGCDRHCAYCAIPIITGKHV 163

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR   +++ E R L+ +G+ E  ++ Q +  + G  LDG++   +DL+  +++I+G+  +
Sbjct: 164 SRPKDEILQEVRNLVADGMKEFQIIAQEL-TYYGVDLDGKR-HIADLISEMADIEGVEWI 221

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R   ++P      L+    +   +  YL + +Q  SD +L+ M+R     E   +I  IR
Sbjct: 222 RLHYAYPNQFPLELLDVMNEKQNVCKYLDIALQHISDSVLERMHRHVNKQETMDLICTIR 281

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML-EQV 382
              P I + +  +VGFPGET++DF+  +D V    + +  +F YS   GT G+N   + +
Sbjct: 282 EKVPGIHLRTTLMVGFPGETEEDFQQLLDFVRWARFERMGAFMYSEEEGTYGANHYADDI 341

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSV 438
            E+VK  RL  L    +E       A +G  ++V+I++  KE    +GR    SP +   
Sbjct: 342 PEDVKQRRLDELMAVQQEISAEIEAAKIGSTMKVIIDR--KENDYFIGRSEFCSPEVDPE 399

Query: 439 VL---NSKNHNIGDIIKVRITDVKISTLYGELV 468
           +L     K   IG   +V+ITD +   LYGE+V
Sbjct: 400 ILIQGGQKAVQIGSFYQVKITDAEEFDLYGEIV 432


>gi|281355187|ref|ZP_06241681.1| MiaB-like tRNA modifying enzyme YliG [Victivallis vadensis ATCC
           BAA-548]
 gi|281318067|gb|EFB02087.1| MiaB-like tRNA modifying enzyme YliG [Victivallis vadensis ATCC
           BAA-548]
          Length = 452

 Score =  163 bits (412), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 127/461 (27%), Positives = 217/461 (47%), Gaps = 43/461 (9%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
            ++ S GC  N+ D+  +     + G       D+ADL V+NTC           +F+  
Sbjct: 15  LYLVSLGCSKNLVDTEVIAGTLLTSGRTLAFEPDEADLYVINTC-----------AFIPA 63

Query: 87  IRNLKNSRIKEG-------GDLLVVVAGCVAQAEGEEILRRS-PIVNVVVGPQTYYRLPE 138
            R+     I++G          L+VVAGC+ + + +  +R+  P V++  G      +  
Sbjct: 64  ARDEAREAIEDGIVWKQEKPGRLLVVAGCLTEWDKDGSVRKEYPEVDLWTGVNQVAEIAR 123

Query: 139 LLER-ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197
           LL+R +   +   +  Y  +D   RL +            A+L I +GC+  CT+C +P 
Sbjct: 124 LLDRQSTLPENAEEPVYLYDDCTPRLQLTLPHL-------AYLKIADGCNNRCTYCSIPG 176

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257
            RG   +R +  VV EAR LI+ GV E+ ++ Q++  + G        T + LL +L+ +
Sbjct: 177 IRGRLRTRPMESVVREARNLIEGGVRELLVIAQDITVY-GNDRPESGDTLARLLTALNAL 235

Query: 258 KGLVRLRYTTSHPRDMSDCLIK--AHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
           +G   +R   +HP   ++  I   A G+  VL PYL +P+Q  SDRILK MNR  T  + 
Sbjct: 236 EGNFVIRLLYTHPAHYTEEFIDFMARGNTKVL-PYLDIPLQHISDRILKQMNRHVTRKQT 294

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
            +++ ++R   P + + + FI GFPGET+++++       K  + +   F YSP   TP 
Sbjct: 295 EELLTKLRERIPGLTLRTTFITGFPGETEEEYQELKSFAKKFKFERCGVFPYSPEPRTPA 354

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVS----FNDACVGQIIEVLIEKHGKEKGKLVGR 431
           +   +QV   +  +R      +L +QQ+S     +   VG+ + VL++   +      G 
Sbjct: 355 AAFPDQVPAELAEQR----STELMKQQISIMKKLSKNQVGKTVRVLVDDVDENGAVARGA 410

Query: 432 --SPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468
             +P + +V+   K   +  G    V+IT      L  ELV
Sbjct: 411 MDAPEIDNVIYIPKPKRLKPGKFCLVKITGTDGCDLIAELV 451


>gi|92119034|ref|YP_578763.1| MiaB-like tRNA modifying enzyme [Nitrobacter hamburgensis X14]
 gi|91801928|gb|ABE64303.1| MiaB-like tRNA modifying enzyme [Nitrobacter hamburgensis X14]
          Length = 423

 Score =  163 bits (412), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 119/378 (31%), Positives = 181/378 (47%), Gaps = 47/378 (12%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDA---DLIVLNTCHIREKAAEKVYSFLG 85
           V ++GC++N ++S  +             + DDA   D++++NTC +  +A  +      
Sbjct: 5   VVTFGCRLNAFESEVIR-----------RNADDAGLDDVVIVNTCAVTNEAVAQARQ--- 50

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            IR LK  R        +VV GC AQ E   +  + P V+ V+G     R  +    AR 
Sbjct: 51  SIRKLKRERPSA----RIVVTGCAAQIE-PTMFAQMPEVDRVIGNDDKMR-GDTWRDART 104

Query: 146 GKRVVDTDYSVEDKFERLSIVD----------------GGYNRKRGVTAFLTIQEGCDKF 189
               V  D+ + ++ E++++ D                GG  R     AF+ +Q GCD  
Sbjct: 105 AFAAV-ADFGIANE-EKIAVADIMAVTEMAPHLVEGFQGGLPR-----AFVQVQNGCDHR 157

Query: 190 CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSD 249
           CTFC++P+ RG   S  +  VVD+ R L++ G  EI L G ++ ++ G  L G       
Sbjct: 158 CTFCIIPFGRGNSRSVPMGAVVDQVRVLVEAGHAEIVLTGVDLTSY-GADLPGGPRLGGL 216

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
           +   L  +  + RLR ++    +    L+ A  + + LMP+LHL +QSG D ILK M RR
Sbjct: 217 IKRILRHVPEMRRLRISSIDSIEADRDLLDAVANEERLMPHLHLSLQSGDDMILKRMKRR 276

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369
           H+  +      ++R +RPDIA  +D I GFP ETDD F  ++DLV          F YSP
Sbjct: 277 HSRRDAIDFCAQVRRLRPDIAFGADIIAGFPTETDDMFARSLDLVADCDLTFLHVFPYSP 336

Query: 370 RLGTPGSNMLEQVDENVK 387
           R GTP   M     E +K
Sbjct: 337 RPGTPAVRMPPVAGEVIK 354


>gi|332662118|ref|YP_004444906.1| 30S ribosomal protein S12 methylthiotransferase rimO
           [Haliscomenobacter hydrossis DSM 1100]
 gi|332330932|gb|AEE48033.1| Ribosomal protein S12 methylthiotransferase rimO [Haliscomenobacter
           hydrossis DSM 1100]
          Length = 437

 Score =  163 bits (412), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 126/451 (27%), Positives = 220/451 (48%), Gaps = 36/451 (7%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSM--DDADLIVLNTCHIREKAAEKVYSFLGR 86
           V + GC  N+ DS  +        ++ V+    +DA+++++NTC   + A ++    +  
Sbjct: 13  VITLGCSKNLVDSENLITQLRGNDFDVVHDSQEEDANVVIINTCGFIDLAKQESIDTILE 72

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
              +K    K GG   + V GC++Q   E++    P V+   G      LP LL +    
Sbjct: 73  YAEVK----KAGGIDKLFVTGCLSQRYKEDLELEIPEVDAYFGT---LELPGLLAK---- 121

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
              ++ DY  E   ERL      Y       A+L I EGC++ C+FC +P  RG  +SR 
Sbjct: 122 ---LNADYKHELIGERLITTPMHY-------AYLKISEGCNRTCSFCAIPLMRGGHVSRP 171

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRY 265
           + ++V EA+ L   GV EI L+ Q +  +   GLD  +K     LL++L++++G+  +R 
Sbjct: 172 IEELVKEAQSLARRGVKEIMLIAQELTYY---GLDIYKKRDLPRLLHALADVEGIEWIRL 228

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
             ++P      ++    +   +  YL +P+Q  S+ +L+ M R+ T  E  ++I + R  
Sbjct: 229 HYAYPSKFPLEILDVIAERPEICNYLDMPLQHASNSVLERMRRQITREETTELIQQARLR 288

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P++ + +  +VG+P E+D +F+   D V ++ + +   F+YS    T   ++ + V   
Sbjct: 289 IPNLTLRTTMLVGYPQESDQEFQELCDFVQEMEFDRMGVFQYSHEESTRAYDVDDDVPAE 348

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVVLN 441
           VKAER   L +  +E     N   VG+  + L ++  KE G  VGR    SP + + VL 
Sbjct: 349 VKAERANALMEIQQEISTRKNFEKVGKTFKTLFDR--KEGGYFVGRTEGDSPEVDNEVLV 406

Query: 442 SKNHN---IGDIIKVRITDVKISTLYGELVV 469
               N   IGD  +VRI +     ++GE++ 
Sbjct: 407 PAKKNFARIGDFAQVRIAEASEYDIFGEIIA 437


>gi|224536031|ref|ZP_03676570.1| hypothetical protein BACCELL_00895 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224522356|gb|EEF91461.1| hypothetical protein BACCELL_00895 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 439

 Score =  163 bits (412), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 114/393 (29%), Positives = 200/393 (50%), Gaps = 22/393 (5%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N  ++  +  +    G       + AD+ V+NTC + E A +K    + R+   
Sbjct: 16  TLGCKLNFSETSTIGKILRDAGVRTARKGEKADICVVNTCSVTEVADKKCRQAIHRL--- 72

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               +K+     VVV GC AQ + E + +    V+VV+G +    L + L   +  +   
Sbjct: 73  ----VKQHPGAFVVVTGCYAQLKPETVAKIEG-VDVVLGAEQKKDLLQYLGNLQKNESGE 127

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
               +++D          G +R R    FL +Q+GCD FC++C +P+ RG   + +++ +
Sbjct: 128 AYASALKDIHSFAPSCSRG-DRTR---YFLKVQDGCDYFCSYCTIPFARGRSRNGTIASM 183

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270
           V++AR+    G  EI L G N+  + GK   GE  TF +L+ +L E++G+ R R ++  P
Sbjct: 184 VEQARQAAAEGGKEIVLTGVNIGDF-GK-TTGE--TFFNLVKALDEVEGIERYRISSIEP 239

Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330
             ++D +I+        MP+ H+P+QSGSD +LK M RR+    +   + +++ V PD  
Sbjct: 240 NLLTDEIIEFVSHSRSFMPHFHIPLQSGSDEVLKLMRRRYDTELFASKVRKVKEVMPDAF 299

Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG---SNMLEQVDENVK 387
           I  D IVG  GETD+ F    + +  +   Q   F YS R GT      +++   +++ +
Sbjct: 300 IGVDVIVGTRGETDEYFEQAYEFIKSLDVTQLHVFSYSERPGTQALKIDHVVTPEEKHRR 359

Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
           ++RLL L     E+  +F    +GQ + VL+E+
Sbjct: 360 SQRLLELSD---EKTHAFYARHIGQTLPVLLER 389


>gi|167836430|ref|ZP_02463313.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Burkholderia
           thailandensis MSMB43]
          Length = 463

 Score =  163 bits (412), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 129/467 (27%), Positives = 216/467 (46%), Gaps = 54/467 (11%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC   + DS ++     ++GYE   + D ADL+V+NTC   ++A ++    +G     
Sbjct: 21  SLGCPKALVDSEQIITQLRAEGYEISGTYDGADLVVVNTCGFIDEAVQESLDAIGEA--- 77

Query: 91  KNSRIKEGGDLLVVVAGCVA---QAEGEEILRR-SPIVNVVVGPQTYYRLPELLERARFG 146
               + E G   V+V GC+     A G  ++    P V  V GP     + +++  +   
Sbjct: 78  ----LAENGK--VIVTGCLGAKKSASGSGLIEEVHPKVLAVTGPHAVGEVMQVV-HSHLP 130

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           K          D F  L +   G        A+L I EGC+  C+FC++P  RG  +SR 
Sbjct: 131 KP--------HDPFVDL-VPAAGIKLTPRHYAYLKISEGCNHRCSFCIIPSMRGDLVSRP 181

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYSLS 255
           +++V+ EA  L  +GV E+ ++ Q+ +A           W G+ L   +   ++L+ +L 
Sbjct: 182 VAEVMLEAENLFKSGVKELLVISQDTSAYGVDVKYRTGFWNGRPL---RTRMTELVGALG 238

Query: 256 EIKG----LVRLRYTTSHPRDMSDCLIKAHGDL-DVLMPYLHLPVQSGSDRILKSMNRRH 310
           E+       VRL Y   +P       + A G L D ++PYL +P Q     +LK M R  
Sbjct: 239 ELAAQYGAWVRLHYVYPYPHVDEIIPMMAQGPLKDHVLPYLDVPFQHAHPDVLKRMKRPA 298

Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370
            A    + + + R + PD+ I S FI GFPGET+  F   +D + +    +   F YSP 
Sbjct: 299 NAERVLERVQKWREICPDLTIRSTFIAGFPGETEAQFETLLDFIREAELDRVGCFAYSPV 358

Query: 371 LGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG 430
            G   + +   + ++++  R     +   E   +  +  VG+ ++VLI++  +E G  VG
Sbjct: 359 EGASANELDGALPDDMREARRARFMEVAEEVSAARIERKVGKTLKVLIDEVNEEGG--VG 416

Query: 431 RS----PWLQSVVL------NSKNHNIGDIIKVRITDVKISTLYGEL 467
           R+    P +  VV        SK + +GD + V+IT      L+GE+
Sbjct: 417 RTAADAPEIDGVVYVEPATKASKRYKVGDFVSVKITGADGHDLWGEV 463


>gi|255691410|ref|ZP_05415085.1| 2-methylthioadenine synthetase [Bacteroides finegoldii DSM 17565]
 gi|260623056|gb|EEX45927.1| 2-methylthioadenine synthetase [Bacteroides finegoldii DSM 17565]
          Length = 439

 Score =  162 bits (411), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 120/430 (27%), Positives = 209/430 (48%), Gaps = 23/430 (5%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N  ++  +  +    G       + AD+ V+NTC + E A +K    + R+   
Sbjct: 16  TLGCKLNFSETSTIGKILREAGVRTARKGEKADICVVNTCSVTEMADKKCRQAIHRL--- 72

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               +K+     VVV GC AQ +  ++ +    V+VV+G +    L + L   +  ++  
Sbjct: 73  ----VKQHPGAFVVVTGCYAQLKPGDVAKIDG-VDVVLGAEQKGELLQYLGNLQKHEKGE 127

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
               + +D    +       +R      FL +Q+GCD FC++C +P+ RG   + +++ +
Sbjct: 128 AITTATKD----IRSFSPSCSRGDRTRFFLKVQDGCDYFCSYCTIPFARGRSRNGTIASM 183

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270
           V++AR+    G  EI L G N+  + GK   GE  TF DL+ +L +I+G+ R R ++  P
Sbjct: 184 VEQARQAAAEGGKEIVLTGVNIGDF-GK-TTGE--TFFDLVQALDQIEGIERYRISSIEP 239

Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330
             ++D +I+        MP+ H+P+QSG D +LK M RR+    +   + +I+ V PD  
Sbjct: 240 NLLTDEIIEFVSHSRSFMPHFHIPLQSGCDEVLKLMRRRYDTALFASKVKKIKEVMPDAF 299

Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM---LEQVDENVK 387
           I  D IVG  GET + F      +  +   Q   F YS R GT    +   +   +++ +
Sbjct: 300 IGVDVIVGTRGETAEFFEQAYRFISGLDVTQLHVFSYSERPGTQALKIDYVVSPEEKHQR 359

Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNI 447
           ++RLL L     E+  +F    +GQ + VL+EK  K    + G +     V + S N   
Sbjct: 360 SQRLLALSD---EKTQAFYARHIGQTMSVLLEK-SKGNTPMHGFTKNYIRVEVGSDNSLD 415

Query: 448 GDIIKVRITD 457
             ++ VR+ D
Sbjct: 416 NQVVNVRLGD 425


>gi|221633225|ref|YP_002522450.1| MiaB-like tRNA modifying protein YliG [Thermomicrobium roseum DSM
           5159]
 gi|221155400|gb|ACM04527.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Thermomicrobium
           roseum DSM 5159]
          Length = 470

 Score =  162 bits (411), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 126/460 (27%), Positives = 217/460 (47%), Gaps = 38/460 (8%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P RF + + GC  N  DS  M     ++G +  +  D+A ++V+NTC     A  +  + 
Sbjct: 4   PLRFHIVTLGCSKNQVDSEGMAQRLIARGLQPTDEPDEAAVLVVNTCGFLAAARAESRAA 63

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +  +     +R + G   +++ AGC+   + +      P ++  V    + R+  ++   
Sbjct: 64  IEEL----AARRRPGQ--IIIAAGCMVSLD-QHRAELPPGLDAYVPTHDWNRIDAVVADL 116

Query: 144 RFGKRVVDTDYSVED--KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
             G  +     S  D   F RL +        R  +A++ I +GCD  C+FC +P  +G 
Sbjct: 117 -LGLPIPSVLESTRDLPSFPRLPV--------RRPSAYVKIADGCDHRCSFCAIPLIKGN 167

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSE-IKG 259
           + S+  S++V E R+L++ G  E+ L+ Q+   +   G D G +    DLL S++E +  
Sbjct: 168 QRSKRPSEIVREIRELVNAGTKEVILVAQDTIRY---GADLGLRNGLPDLLRSIAEHVPD 224

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           L  LR    +P  +   LI    +L   +PYL +P+Q     +L+ M R      YR++I
Sbjct: 225 LPWLRLLYLYPSPLLFRLIDTMAELKPCVPYLDIPLQHADPVLLRRMMRPSDPDFYRRLI 284

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
              R   PD+A+ + FIVGFPGETD+ FR   D V ++ +     F YS    TP + M 
Sbjct: 285 AYARERLPDVALRTTFIVGFPGETDEQFRRLYDFVAEMEFDHVGVFVYSREQPTPSARME 344

Query: 380 EQVDENVKAERLLCLQKKLREQQVSF--NDACVGQIIEVLIEKHGK-----------EKG 426
           + V   V  ER   L +   +Q++S+  N   VG+I+ +L+E  G+             G
Sbjct: 345 DPVPPEVAEERRAALMEL--QQRISWARNKTLVGKILPILVEGTGEVEDERGNRAPLSAG 402

Query: 427 KLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGE 466
           +    +P +  +V   +   +G+ + VRIT  +   L+ E
Sbjct: 403 RAARHAPEVDGLVFVPEELPLGEFVTVRITQAEPYDLWAE 442


>gi|149045300|gb|EDL98386.1| CDK5 regulatory subunit associated protein 1-like 1 (predicted),
           isoform CRA_c [Rattus norvegicus]
          Length = 578

 Score =  162 bits (411), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 125/457 (27%), Positives = 217/457 (47%), Gaps = 41/457 (8%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           Q+ +++++GC  N  D   M     + GY+   +  DADL +LN+C ++  A +    F 
Sbjct: 63  QKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDH---FR 119

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             I+       K      VV+AGCV QA+  +   +      ++G Q   R+ E++E   
Sbjct: 120 NSIKKAHEENKK------VVLAGCVPQAQPRQDYLKG---LSIIGVQQIDRVVEVVEETI 170

Query: 145 FGKRVVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            G  V       E   +RL  + +D    RK  +   ++I  GC   CT+C   + RG  
Sbjct: 171 KGHSVRLLGQKKESG-KRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNL 229

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-RGKGLDGEKCTFSDLLYSLSEI---- 257
            S  + ++V+ A++    GVCEI L  ++  A+ R  G D        LL+ L E+    
Sbjct: 230 ASYPIDELVERAKQSFQEGVCEIWLTSEDTGAYGRDIGTD-----LPTLLWKLVEVIPEG 284

Query: 258 ----KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
                G+    Y   H  +M+  L     +   +  +LH+PVQS SD +L  M R +   
Sbjct: 285 AMLRLGMTNPPYILEHLEEMAKIL-----NHPRVYAFLHIPVQSASDSVLMDMKREYCVA 339

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
           ++++++D ++   P I I++D I GFPGETD DF+ T+ LV++  +   F  ++ PR GT
Sbjct: 340 DFKRVVDFLKEKVPGITIATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGT 399

Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFN--DACVGQIIEVLIEKHGKEKGKLVGR 431
           P +   +QV  +VK +R   L +       S+N  D  +G+  +VL+ +   +    V  
Sbjct: 400 PAAKA-KQVPAHVKKQRTKDLSRVFH----SYNPYDHKIGERQQVLVTEESFDSKFYVAH 454

Query: 432 SPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           + + + V++      +G +++V I +     L G+ V
Sbjct: 455 NRFYEQVLVPKNPAFMGKMVEVDIYESGKHFLKGQPV 491


>gi|134046253|ref|YP_001097738.1| MiaB-like tRNA modifying protein [Methanococcus maripaludis C5]
 gi|132663878|gb|ABO35524.1| MiaB-like tRNA modifying enzyme [Methanococcus maripaludis C5]
          Length = 425

 Score =  162 bits (411), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 127/455 (27%), Positives = 233/455 (51%), Gaps = 44/455 (9%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + +++ YGC +N  D+  +++     + +E  +++DD+D+IV+NTC +R++   ++ S +
Sbjct: 2   KIYIEGYGCTLNTADTEIIKNSVNEFEDFELTDNVDDSDIIVINTCIVRQETEHRMISRI 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE--- 141
              ++L         D  VVVAGC+A+A  ++I     + +V+V P+      ++L+   
Sbjct: 62  EYFKSL---------DKKVVVAGCMAKALPKKI---KTLADVLVMPREAQYSGKILKDNL 109

Query: 142 ----RARFGKRVVDTDYSVEDKF-ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
                 + GK   + + + ED+  E++  V       +G+   L I EGC   CT+C+V 
Sbjct: 110 LKGCSEKNGKS--NENLNFEDQLNEKIKKVSS-----QGLITALPICEGCLGSCTYCIVK 162

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256
             RG   S     +V +A +L+  G   + +  Q+   +   GLD    +  +L+  +SE
Sbjct: 163 RARGNLASYDRDLIVKKAEELVKTGTKCLLVTAQDTACY---GLDNND-SLPNLINDISE 218

Query: 257 IKGLVRLRYTTSHPR---DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
           I     +R    H +    + D LI++     V+  +LHLP+QSG D++LK MNR +T  
Sbjct: 219 IPEKFAMRIGMMHAKFAEPILDELIESFKSKKVV-KFLHLPIQSGDDQVLKDMNRNYTVD 277

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
           EY  +++  +S   ++  ++D IVGFP ET++ F  T+++V KI      + KYS R  T
Sbjct: 278 EYISVLNEFKSKIKNLNFTTDVIVGFPTETEEAFENTLEIVKKIKPDFTHAAKYSQRKYT 337

Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSP 433
             + +L+QVD  ++ ER   L +  RE     N   +G+  E+L+ K        +G + 
Sbjct: 338 KAA-ILKQVDTKIRKERSEILNELRRELSYENNTRHIGETFEILVTKSN------MGVTD 390

Query: 434 WLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
             ++V+   +   IG+  +V++T  K   L G+L+
Sbjct: 391 NCKNVIF-EEPAKIGEFRRVKVTGAKTFGLSGKLL 424


>gi|313238118|emb|CBY13216.1| unnamed protein product [Oikopleura dioica]
          Length = 425

 Score =  162 bits (411), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 119/439 (27%), Positives = 202/439 (46%), Gaps = 40/439 (9%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA-EKVYSFLGRIRN 89
           S GC  N+ DS  M       G       + AD++++NTC   + A  E + +  G +  
Sbjct: 9   SLGCAKNLIDSEVMIGHLAQAGMSLTPDPELADVLIVNTCSFIDMAKKESIDAIFGAVDG 68

Query: 90  LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149
            K    +E     ++VAGC++Q    E+    P V+  +GP       + +         
Sbjct: 69  RKTDPDRERQK--IIVAGCLSQRFATELPGIMPEVDAFIGPSATEDPRDFV--------T 118

Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209
           +   Y  +    R+ +    +       A++ I EGC+  CTFC++P  RG   SR+   
Sbjct: 119 LKPQYVPDFSTPRIRLTPDHF-------AYVKIAEGCNHTCTFCIIPKIRGQHRSRTQES 171

Query: 210 VVDEARKLIDNGVCEITLLGQN-----VNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           V  E   L+ +GV EI L+ Q+     ++ W G  L    CT   LL  ++ I+G   +R
Sbjct: 172 VFKEVEALVKSGVKEINLISQDTTYFGMDQWEGNSL----CT---LLRQINTIEGDFWVR 224

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
              +HP   SD LI+   + D +  Y+ +P+Q  SD +L +M R  +    R ++ R+R+
Sbjct: 225 LLYTHPAHWSDELIETIAECDKVAKYVDIPLQHISDHMLSAMKRVTSGDYIRDLLRRMRA 284

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             P + I + FIVGFPGET++DF   ++ + +  + +A  F+YS   GT    M  Q+  
Sbjct: 285 GIPGLGIRTTFIVGFPGETEEDFNELLEFIREFRFERAGVFQYSKEEGTRAYKMDGQLHH 344

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPW----LQSVVL 440
             +  R      +L++     N A VG+ + VL+E+ G      V R+ W    +   V+
Sbjct: 345 ATRKSRWSRAMAELQKIAGETNQAQVGKAVRVLVEEPG------VARTQWDAPEIDGSVI 398

Query: 441 NSKNHNIGDIIKVRITDVK 459
             +   +G+   + I D +
Sbjct: 399 VDEALPVGEFADITIGDWR 417


>gi|48243743|gb|AAT40846.1| hypothetical protein [Haemophilus influenzae]
          Length = 327

 Score =  162 bits (411), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 107/314 (34%), Positives = 171/314 (54%), Gaps = 36/314 (11%)

Query: 178 AFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA--- 234
           A+L I EGCD  CTFC++P  RG   SRS++QV+DEA++L + GV E+ ++ Q+ +A   
Sbjct: 22  AYLKISEGCDHRCTFCIIPSMRGDLESRSITQVLDEAKRLAEAGVKELLVVSQDTSAYSM 81

Query: 235 -------------WRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAH 281
                        W G  +  +  T   L   L ++   VRL Y   +P    D LI   
Sbjct: 82  DLKRQEGGVKTAFWNGMPIKNDLMT---LCKQLGKLGIWVRLHYVYPYPH--VDDLIPLM 136

Query: 282 GDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPG 341
            D   L+PYL +P+Q  S +ILK+M R  +     + I + R + PD+ + S FI+GFPG
Sbjct: 137 AD-GTLLPYLDIPLQHASPKILKAMKRPGSIDRTLERIKQWREICPDLTLRSTFILGFPG 195

Query: 342 ETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQ 401
           ET++DF+  +D + +    +   FK+SP  G P ++M +QV E+VK ER     +   +Q
Sbjct: 196 ETEEDFQLLLDFLKEAQLDRVGCFKFSPVEGAPATDMADQVPEDVKEERFHRFMQ--LQQ 253

Query: 402 QVSFN--DACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVV----LNSKNHNIGDII 451
           ++S N     +G+ ++VL+++  +E   ++GRS    P +  +V    L+  N  +GD+I
Sbjct: 254 EISANRLKQKIGKTLDVLVDEIDEE--GIIGRSKADAPEVDGLVYVDNLSGINVKVGDVI 311

Query: 452 KVRITDVKISTLYG 465
           KV IT+     L+G
Sbjct: 312 KVTITNSDEYDLWG 325


>gi|227823742|ref|YP_002827715.1| MiaB-like tRNA modifying enzyme [Sinorhizobium fredii NGR234]
 gi|227342744|gb|ACP26962.1| MiaB-like tRNA modifying enzyme [Sinorhizobium fredii NGR234]
          Length = 404

 Score =  162 bits (411), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 109/326 (33%), Positives = 159/326 (48%), Gaps = 15/326 (4%)

Query: 103 VVVAGCVAQAEGEEILRRSPIVNVVVGPQ------TYYRLPELLERARFGKRVVDTDYSV 156
           ++V GC AQ E E     +  V+ V+G +      +Y  LP+    A    RV D     
Sbjct: 45  IIVTGCAAQTEKETFAEMAE-VDAVLGNEEKLKSASYRSLPDFGVSAEEKLRVNDIMSVR 103

Query: 157 EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARK 216
               + +  +DG       V AF+ +Q GCD  CTFC++PY RG   S  +  VVD+AR+
Sbjct: 104 ATAPQMIRHIDGH------VRAFIQVQNGCDHRCTFCIIPYGRGNSRSVPMGAVVDQARR 157

Query: 217 LIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDC 276
           L+++G  EI L G +  ++ G  L G           L ++  ++RLR ++    +    
Sbjct: 158 LVESGYREIVLTGVDATSY-GADLPGTPTLGLLARTLLKQVPDILRLRLSSIDSIEADRH 216

Query: 277 LIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFI 336
           L+    D    MP+LHL +Q G D ILK M RRH++ E R     +R +RP+I+  +D I
Sbjct: 217 LLDLIADEPRFMPHLHLSLQHGDDLILKRMKRRHSSAEARAFCAEVRRLRPEISFGADMI 276

Query: 337 VGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQK 396
            GFP ET+  F     L +  G A    F YSPR GTP + M  Q D  +  ER   L+ 
Sbjct: 277 AGFPTETEAMFDNAARLAEDCGIAYLHVFPYSPRPGTPAARM-PQPDRALVKERAARLRG 335

Query: 397 KLREQQVSFNDACVGQIIEVLIEKHG 422
           K  E   +  D  VG    +L+E +G
Sbjct: 336 KGAELYAAHLDRMVGSEQTILVEMNG 361


>gi|330995923|ref|ZP_08319818.1| tRNA methylthiotransferase YqeV [Paraprevotella xylaniphila YIT
           11841]
 gi|329574262|gb|EGG55837.1| tRNA methylthiotransferase YqeV [Paraprevotella xylaniphila YIT
           11841]
          Length = 447

 Score =  162 bits (411), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 131/441 (29%), Positives = 215/441 (48%), Gaps = 36/441 (8%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N  ++  +  +    G   V + + AD+ V+NTC + E A  K        R  
Sbjct: 16  TLGCKLNFAETSTIGRLLKEMGVRTVRAGERADICVVNTCSVTEVADHKC-------RQA 68

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPI--VNVVVGPQTY--------YRLPELL 140
            +  +K+     VVV GC AQ + E++   S I  V++V+G +           RLP LL
Sbjct: 69  IHKLVKQHPGAFVVVTGCYAQLKPEQV---SAIDGVDLVLGAEQKGDILRYLEERLP-LL 124

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGY-NRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
              R         Y+V  K     +      +R R    FL +Q+GCD +CT+C +PY R
Sbjct: 125 PAERKSADAEHAAYTVPTKDIHTFVPSCSCGDRTR---YFLKVQDGCDYYCTYCTIPYAR 181

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G   + S++ +V +A +    G  EI L G N+  + GK   GE  +F DL+ +L  ++G
Sbjct: 182 GRSRNGSIASLVRQAEQAASEGGREIVLTGVNIGDF-GK-TTGE--SFLDLVKALDRVEG 237

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           + R R ++  P  +++ ++    +    MP+ H+P+QSGSD +LK M RR+T   + + I
Sbjct: 238 IARYRISSIEPNLLTEDVLAFCAESRAFMPHFHIPLQSGSDEVLKLMRRRYTTNFFAEKI 297

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            R++ + PD  I  D IVG  GETD  F      +  +  +Q   F YS R GT    + 
Sbjct: 298 SRVKELMPDAFIGVDVIVGTRGETDGCFEEAFGFIRSLDVSQLHVFSYSERPGTMALKIG 357

Query: 380 EQV---DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQ 436
             V   +++ +++RLL L     E   +F    +G   EVL+EK  + +G + G +    
Sbjct: 358 HSVSPEEKHRRSQRLLELSDVKWE---AFYRRYIGTEAEVLLEK-SRTEGVMHGFTANYI 413

Query: 437 SVVLNSKNHNIGDIIKVRITD 457
            V L  + +    I++VR+ D
Sbjct: 414 RVELPVEGNLDNQIVRVRLGD 434


>gi|254451116|ref|ZP_05064553.1| MiaB-like tRNA modifying enzyme [Octadecabacter antarcticus 238]
 gi|198265522|gb|EDY89792.1| MiaB-like tRNA modifying enzyme [Octadecabacter antarcticus 238]
          Length = 405

 Score =  162 bits (411), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 126/433 (29%), Positives = 205/433 (47%), Gaps = 43/433 (9%)

Query: 36  MNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRI 95
           MN Y++  M+++  + G +        + +++NTC +  +A  K    + ++R       
Sbjct: 1   MNAYETEAMKELAGAAGVQ--------NAVIVNTCAVTAEAVRKAKKEIRKLR------- 45

Query: 96  KEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG------PQTYYRL-PELLERARFGKR 148
           +E  D  ++V GC AQ E E  +   P V+ V+G        T+  + P+L+ +    + 
Sbjct: 46  RENPDATLIVTGCAAQTEPETFIA-MPEVSKVIGNTEKMQAATWAGMAPDLIGQTEPVQ- 103

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
            VD   SV +    L  +DG   R R   A++ +Q GCD  CTFC++PY RG   S    
Sbjct: 104 -VDDIMSVTETAGHL--IDGFGTRSR---AYVQVQNGCDHRCTFCIIPYGRGNSRSVPAG 157

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
            VV++ ++L+  G  EI L G ++ +W G  L         ++  L  +  L RLR ++ 
Sbjct: 158 VVVEQIKRLVGKGYNEIVLTGVDLTSW-GADLPALPKLGDLVMRILKLVPDLPRLRISSI 216

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
              ++ D L+ A      LMP+LHL +Q G D ILK M RRH   +  +  +  R +RPD
Sbjct: 217 DSIEVDDNLLCAIATEPRLMPHLHLSLQHGDDLILKRMKRRHLRDDAIKFSEDARKLRPD 276

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM--LEQVDENV 386
           +   +D I GFP ET+  F  ++ L+D         F YSPR GTP + M  +   D  V
Sbjct: 277 MTFGADIIAGFPTETEAHFENSLKLIDDCALTWLHVFPYSPRQGTPATRMPAVNGKDITV 336

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHN 446
           +A RL         + +S   A +G+  +VL+E         +GR+     V   + +H 
Sbjct: 337 RAARLRAAGDVAVAKHLS---AQLGKTHQVLMEN------PRMGRTEQFTEVTFET-DHP 386

Query: 447 IGDIIKVRITDVK 459
              II  +I  ++
Sbjct: 387 ESQIITAKIIGIR 399


>gi|303237126|ref|ZP_07323696.1| MiaB-like protein [Prevotella disiens FB035-09AN]
 gi|302482513|gb|EFL45538.1| MiaB-like protein [Prevotella disiens FB035-09AN]
          Length = 452

 Score =  162 bits (411), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 126/438 (28%), Positives = 200/438 (45%), Gaps = 25/438 (5%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N  ++          G       + AD+ ++NTC + E A  K        R +
Sbjct: 16  TLGCKLNFSETSTFARSLREMGVREAKKDEIADICLINTCSVTEVADHKC-------RQI 68

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
            N   ++     +VV GC AQ  G E +   P VN+V+G      L + L  A +    +
Sbjct: 69  INRMARQNPGAFIVVTGCYAQL-GSERVAEIPGVNLVLGSNEKANLIQFLSDA-WNNPTI 126

Query: 151 DTDYSVEDK---FERLSIVD-----GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            T+   E K   F  +   D        +R      FL +Q+GC+ FCT+C +PY RG  
Sbjct: 127 GTNSDEEKKKAIFHSVKTKDIVTFQPSCSRGNRTRYFLKVQDGCNYFCTYCTIPYARGFS 186

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            + ++  +V++A +    G  EI L G N+  + G+       +F DL+ +L +++G+ R
Sbjct: 187 RNPTIQSLVEQAEQAAKEGGKEIVLTGVNIGDF-GRTTSE---SFLDLVKALDQVEGIER 242

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
            R ++  P  + D LI+        MP+ H+P+QSGSD +LK M+RR+    +   I+ I
Sbjct: 243 FRISSLEPDLIDDELIRYCATSRAFMPHFHIPLQSGSDEVLKLMHRRYDTALFAHKINLI 302

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           + + PD  I  D +VG  GE    F    + +  +   Q   F YS R GT   ++   V
Sbjct: 303 KEITPDAFIGVDVMVGCRGEEPQYFDDCYNFLSSLPITQLHVFPYSERPGTSALSIPYVV 362

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
           DE  K  R   L +   E    F    +G+  EVL+EK  + K  + G +     V LN 
Sbjct: 363 DEKEKKCRARQLLQLSDEMTHKFYAEHIGKEAEVLLEKAVRGKS-MHGFTKNYIRVELNP 421

Query: 443 ---KNHNIGDIIKVRITD 457
              +      IIKVR+ D
Sbjct: 422 TQVREEYDNQIIKVRLGD 439


>gi|221067926|ref|ZP_03544031.1| MiaB-like tRNA modifying enzyme YliG [Comamonas testosteroni KF-1]
 gi|220712949|gb|EED68317.1| MiaB-like tRNA modifying enzyme YliG [Comamonas testosteroni KF-1]
          Length = 468

 Score =  162 bits (411), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 135/486 (27%), Positives = 217/486 (44%), Gaps = 71/486 (14%)

Query: 20  QCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEK 79
           Q  +P+  FV S GC   + DS  +     ++GY+   + + ADL+++NTC   + A ++
Sbjct: 11  QTAIPKVGFV-SLGCPKALTDSELILTQLSAEGYQTSKTFEGADLVIVNTCGFIDDAVKE 69

Query: 80  VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEE-----ILRRSPIVNVVVGPQTYY 134
               +G                 V+V GC+    G++     +    P V  V GP    
Sbjct: 70  SLDTIGEALAANGK---------VIVTGCLGAKAGKDGGSTMVAEVHPSVLAVTGPHAT- 119

Query: 135 RLPELLERARFGKRVVDTDYS----VEDKFERL---SIVDGGYNRKRGVTAFLTIQEGCD 187
                       + V+D  ++      D F  L   S  D G        A+L I EGC+
Sbjct: 120 ------------QEVMDAVHTHLPKPHDPFVDLVPGSFGDAGIKLTPKHYAYLKISEGCN 167

Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WR 236
             CTFC++P  RG  +SR +  V+ EA+ L + GV E+ ++ Q+ +A           W 
Sbjct: 168 HRCTFCIIPSMRGDLVSRPIGDVLKEAKALFEGGVKELLVISQDTSAYGVDVKYRTGFWD 227

Query: 237 GKGLDGEKCTFSDLLYSLSEIKG-LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPV 295
           GK +       +D L  L++  G  VRL Y   +P   +   + A G +   +PYL +P+
Sbjct: 228 GKPVKTRMLELADELGKLAQQHGAWVRLHYVYPYPTVDAVLPLMAEGKI---LPYLDVPL 284

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVR---PDIAISSDFIVGFPGETDDDFRATMD 352
           Q     +LK M R  +     + +DRIR  R   P++ I S FI GFPGET+++F   ++
Sbjct: 285 QHSHPDVLKRMKRPASG---EKNLDRIREWRKICPELVIRSTFIAGFPGETEEEFEHLLN 341

Query: 353 LVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQ 412
            + +    +A  F YSP  G   + +   + E V+  R     +   E         VGQ
Sbjct: 342 FIREAEIDRAGCFAYSPVDGATANELPGMLPEEVREARRARFMEVAEEVSTQRLQRRVGQ 401

Query: 413 IIEVLIEKH---GKEKGKLVGRS----PWLQSVVL------NSKNHNIGDIIKVRITDVK 459
           +++VL++K    GK+ G  VGR+    P +  VV        SK + +G++I VRI   +
Sbjct: 402 VMKVLVDKAVSLGKKGG--VGRTYADAPEIDGVVHIQPPEKASKTYKVGELISVRIVGTQ 459

Query: 460 ISTLYG 465
              L G
Sbjct: 460 GHDLVG 465


>gi|329957659|ref|ZP_08298134.1| tRNA methylthiotransferase YqeV [Bacteroides clarus YIT 12056]
 gi|328522536|gb|EGF49645.1| tRNA methylthiotransferase YqeV [Bacteroides clarus YIT 12056]
          Length = 445

 Score =  162 bits (411), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 115/390 (29%), Positives = 189/390 (48%), Gaps = 16/390 (4%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N  ++  +  +    G       + AD+ V+NTC + E A +K    + R+   
Sbjct: 16  TLGCKLNFSETSTIGKILREAGVRTARKGEKADICVVNTCSVTEVADKKCRQAIHRL--- 72

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               +K+     VVV GC AQ + + + +    V+VV+G +    L + L      K   
Sbjct: 73  ----VKQHPGAFVVVTGCYAQLKPDAVAKIEG-VDVVLGAEQKKDLLQYL--GDLKKHES 125

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
              Y+     + +       +R      FL +Q+GCD +C++C +P+ RG   + S++ +
Sbjct: 126 GEAYT--SALKDIRSFAPSCSRGDRTRFFLKVQDGCDYYCSYCTIPFARGRSRNGSIASL 183

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270
           V++AR+    G  EI L G N+  + GK   GE  TF DL+ +L E++G+ R R ++  P
Sbjct: 184 VEQARQAAAEGGKEIVLTGVNIGDF-GKST-GE--TFFDLVKALDEVEGIERYRISSIEP 239

Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330
             ++D +IK        MP+ H+P+QSGSD +LK M RR+    +   + RI+ V PD  
Sbjct: 240 NLLTDEIIKFVSRSKRFMPHFHIPLQSGSDEVLKLMRRRYDTALFASKVRRIKEVMPDAF 299

Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER 390
           I  D IVG  GET++ F      +  +   Q   F YS R GT    +   V    K  R
Sbjct: 300 IGVDVIVGTRGETEEYFEQAYRFIQGLDVTQLHVFSYSERPGTQALKIDHVVSSEEKHRR 359

Query: 391 LLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
              L +   E+  +F    +GQ + VL+E+
Sbjct: 360 SQLLLELSDEKTRAFYARHIGQTMPVLLER 389


>gi|325474677|gb|EGC77863.1| MiaB-like tRNA modifying enzyme YliG [Treponema denticola F0402]
          Length = 474

 Score =  162 bits (411), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 133/467 (28%), Positives = 221/467 (47%), Gaps = 65/467 (13%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++FF+  +GC  N  D+  +  +  +  ++  +  D+ADLI++N+C     A E+  + +
Sbjct: 4   KKFFMDLHGCAKNQVDAELIIGIMENLSWKNTSDPDEADLIIVNSCGFINSAKEESINAV 63

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            + +   + R K      +++AGC+A+   + +    P  + + G      LP+L++ + 
Sbjct: 64  LQAK-AAHPRTK------ILLAGCLAERYADILKNDLPEADGIFGNGNLSLLPQLID-SM 115

Query: 145 FGKRVVDTDYSVEDKF-------ERLSIVDGGYNRKRGV--TAFLTIQEGCDKFCTFCVV 195
           F K+      + E+KF        ++ I  G   +      + ++ I EGCD FC+FC +
Sbjct: 116 FPKK------TSEEKFIDKILIPPQIGICGGERPKILNFPRSTYIKITEGCDNFCSFCAI 169

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR-GKG------LDGEKCT-F 247
           P  RG   SR +  + DE +  +  G  E  L+GQ++ A++ GK       L  E C+  
Sbjct: 170 PIIRGRLRSRPIKDICDEIKTFLKKGFYEFNLIGQDLAAYQTGKNDLNENELYRENCSGL 229

Query: 248 SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL---------MPYLHLPVQSG 298
           + LL S+SEIKG  ++R    HP          H  LD+L         +PY  +P QSG
Sbjct: 230 ALLLKSISEIKGNFKIRLLYIHPD---------HFPLDILPIMTADKRFLPYFDIPFQSG 280

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIR-------SVRPDIAISSDFIVGFPGETDDDFRATM 351
           + +I+++MNR   A  Y  II  IR       S   +  I + F+VGFPGETD+DF  T+
Sbjct: 281 AQKIIRAMNRNGAAEVYLDIIKNIREAFEKAKSPYGEPQIRTTFLVGFPGETDEDFNETI 340

Query: 352 DLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVG 411
             + ++    +  F YS    TP  +   +V +     RL  +Q           D+ +G
Sbjct: 341 KFLKELRPLWSGGFTYSREEDTPSYSFKGKVPKKTAEARLAEIQNTQTSITEKKLDSFIG 400

Query: 412 QIIEVLIEK--HGKEKGKLVGRSPWLQ------SVVLNSKNHNIGDI 450
           + IEVL+E+    ++K  L     W Q      +VVLN  N N  DI
Sbjct: 401 KEIEVLVEELIQAEDKAFLALGRAWFQAPEVDGAVVLNF-NLNKKDI 446


>gi|242399008|ref|YP_002994432.1| Probable 2-methylthioadenine synthetase [Thermococcus sibiricus MM
           739]
 gi|242265401|gb|ACS90083.1| Probable 2-methylthioadenine synthetase [Thermococcus sibiricus MM
           739]
          Length = 424

 Score =  162 bits (411), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 127/446 (28%), Positives = 226/446 (50%), Gaps = 27/446 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R  +++YGC  N  D+  ME +    GYE V+ +D AD +++NTC +++   + +     
Sbjct: 2   RVHIETYGCTRNKADAEMMEALLLRAGYEVVD-LDSADYVIMNTCAVKDPTEKHMAR--- 57

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           RI+ L +S  +      V+V GC+       I  R   V+ ++G ++  R+   +E A  
Sbjct: 58  RIKELLDSGKR------VIVTGCLPHVNPSAIDER---VSGILGVKSIDRIIGAIELAER 108

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G+++++ +   E   ++L I       K GV   + I EGC   CT+C   + RG+  S 
Sbjct: 109 GEKLINVEGWRERSIDKLEIPRVW---KGGVVFVVPISEGCLNACTYCATRFARGVLKSY 165

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
               +V   ++ +  G  EI L  ++   +   G D      + LL  ++ I+G  R+R 
Sbjct: 166 KPGLIVKWVKEAVAKGYKEIQLSSEDTGCY---GFDI-GTNLARLLDEITSIEGEFRIRV 221

Query: 266 TTSHPRD---MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
              +P +   + D LI+A+ D + +  +LHLPVQSG + ILK M R +T  E+ +I+   
Sbjct: 222 GMMNPNNAVKVLDELIEAYKD-NKIYKFLHLPVQSGDNEILKRMGRPYTVEEFEEIVREF 280

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R    D+ +++D IVGFPGE+++ F+ T++L+ ++   +    ++SPR GT  + M +Q+
Sbjct: 281 RKHIKDLNLNTDIIVGFPGESEEAFQNTVELIKRVRPDKINVSRFSPRPGTVAARMKDQI 340

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
                 ER   L +         N   +G+ +EVL      +KG + GR+   + ++L  
Sbjct: 341 VGWRVKERSRYLHRLRLSISYEINRRYLGREMEVLTHGE-GKKGGIEGRTMNYKDIIL-- 397

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
               +G+ +KV++T    + L GELV
Sbjct: 398 PEAPVGEFVKVKVTKTTSTYLLGELV 423


>gi|49474821|ref|YP_032863.1| hypothetical protein BQ13490 [Bartonella quintana str. Toulouse]
 gi|49240325|emb|CAF26807.1| hypothetical protein BQ13490 [Bartonella quintana str. Toulouse]
          Length = 427

 Score =  162 bits (411), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 114/375 (30%), Positives = 185/375 (49%), Gaps = 39/375 (10%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           ++GC++N Y+S  +     S G +++ +    D I+ NTC +  +A  KV   + + +  
Sbjct: 7   TFGCRLNSYESEIIRKESASSGLDQLKN----DAIIFNTCAVTAEAVRKVKQAIRKAK-- 60

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG------PQTYYRLPELLERAR 144
                +E     ++V GC AQ E       +  V++V+G        +Y +LP+      
Sbjct: 61  -----RENPHARIIVTGCAAQTEARNFALMTE-VDLVLGNEEKLYAHSYCQLPD------ 108

Query: 145 FGKRVVDTDYSVEDKFERLSI----VDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           FG    D    V D  E   I    V     R R   AF+ +Q GCD  CTFC++PY RG
Sbjct: 109 FGINH-DEKLRVNDIMEVQKIAPHMVSAIEERTR---AFVQVQNGCDHRCTFCIIPYGRG 164

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS-LSEIKG 259
              S  +  V+++ ++L +NG+ E+ L G ++ ++ G  L G K T   L+ + L  +  
Sbjct: 165 PSRSVPMGAVIEQIKQLTNNGIQEVILTGVDLTSY-GHDLPG-KTTLGKLISTILHHVSD 222

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           L RLR ++    +    LI        +MP+LHL +Q+G + ILK M RRH      Q  
Sbjct: 223 LPRLRLSSIDSIEADQELINLLAYEKRIMPHLHLSLQAGDNMILKRMKRRHLREHAIQFC 282

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
             +R+ RP +   +D I GFP ET++ F+ ++ LV++        F +SPR GTP + M 
Sbjct: 283 QDLRAKRPTMVYGADLIAGFPTETEEMFQNSLALVNECNLIHLHVFPFSPREGTPAARM- 341

Query: 380 EQVDENV---KAERL 391
            Q++  +   +AERL
Sbjct: 342 PQINRKIVKMRAERL 356


>gi|168184612|ref|ZP_02619276.1| RNA modification enzyme, MiaB family [Clostridium botulinum Bf]
 gi|237795842|ref|YP_002863394.1| MiaB family RNA modification protein [Clostridium botulinum Ba4
           str. 657]
 gi|182672297|gb|EDT84258.1| RNA modification enzyme, MiaB family [Clostridium botulinum Bf]
 gi|229260716|gb|ACQ51749.1| RNA modification enzyme, MiaB family [Clostridium botulinum Ba4
           str. 657]
          Length = 445

 Score =  162 bits (411), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 133/441 (30%), Positives = 221/441 (50%), Gaps = 37/441 (8%)

Query: 31  SYGCQMNVYDSLRMEDMFF--SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           S GC  N  DS   E M +  ++  E V    +A +I++NTC   E A E+  + + ++ 
Sbjct: 10  SLGCDKNRIDS---ELMLYKLNEEAELVKDPKEAQVIIVNTCGFIETAKEESINTILQMA 66

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER-ARFGK 147
           + K +        ++VV GC+ Q    E+    P +++++G   Y +L E ++   + G+
Sbjct: 67  SYKKTH----NCKVLVVTGCLTQRYKGELKELIPEMDIMLGVNDYDKLLESIKVFLKSGE 122

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNR---KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
           +      S   K+    I +G  NR       TA++ I EGC+ FCT+C +P  RG   S
Sbjct: 123 K------SFYHKYSDTKINEG--NRILTTPTYTAYVRIAEGCNNFCTYCAIPRIRGKYRS 174

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R    ++ E   L   GV EI L+ Q+   + G  + G+K    +LL  +S++KG+  +R
Sbjct: 175 RKKENILKEVENLAKQGVKEIILIAQDTTMY-GIDIYGKK-VLHELLRDISKVKGVKWIR 232

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
               +P ++++ LI+     D +  YL LP+Q  S+ +LK M R+ T      II ++R 
Sbjct: 233 LLYCYPEEITNELIEEIKSNDKVCKYLDLPIQQISNSVLKRMGRKTTKETIINIIKKLRK 292

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD- 383
               I + +  IVGFPGET+ +F    + V  I   +   FKYS   GT  + M EQ+D 
Sbjct: 293 EIEGITLRTSLIVGFPGETEGEFSELKEFVSDIKLDKLGVFKYSKEEGTSAALMEEQIDE 352

Query: 384 --ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQS 437
             +  + E ++ LQ+ + +     N   +G+I EV++E  G ++    GR    SP +  
Sbjct: 353 EIKEKREEEIMILQQSISK---DINKEKIGKIYEVIVE--GTKEDMYYGRNYEMSPEIDG 407

Query: 438 VVLNSKNHN--IGDIIKVRIT 456
            +   K+ N  IGDIIKV++T
Sbjct: 408 EICFEKDENVKIGDIIKVKVT 428


>gi|160901569|ref|YP_001567150.1| MiaB-like tRNA modifying enzyme YliG [Petrotoga mobilis SJ95]
 gi|238066434|sp|A9BEU9|RIMO_PETMO RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|160359213|gb|ABX30827.1| MiaB-like tRNA modifying enzyme YliG [Petrotoga mobilis SJ95]
          Length = 435

 Score =  162 bits (411), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 129/455 (28%), Positives = 224/455 (49%), Gaps = 33/455 (7%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++F +   GC  N  D    + +  S+GY+  ++   A+ I ++TC   E+A ++    +
Sbjct: 2   KKFHIVKLGCPKNDADMEIFKGLLQSKGYKYESNPQLANYIFIDTCGFIEEAKKESIETI 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
               +LK++      +L V+  GC+ Q   ++IL+  P ++ + G  +   + E +E   
Sbjct: 62  FEYVSLKDN----NKNLKVIPIGCLTQRYFDDILKDIPEIDGLYGVLSPKTIVEKIENGE 117

Query: 145 --FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
             F + + +T Y  + +    +I D  Y       A++ I +GC + C FC +P  +G  
Sbjct: 118 YFFKRDIPETLYDCKIR----AIPDSHY-------AYVKIGDGCSRNCAFCSIPTFKGKP 166

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG-EKCTFSDLLYSLSEIKGLV 261
            SRS+ ++ +E   L+  GV EI L+ Q+   +   G+D  +K    DLL  L+ IKG  
Sbjct: 167 KSRSIEEINEEVEFLVSKGVKEIILVSQDNTLY---GIDNYQKQALPDLLDKLNNIKGKF 223

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
            +R    HP  +S+ +I++    + ++ Y  +P+Q  SD+IL+SM R     E  ++ ++
Sbjct: 224 WIRVMYLHPDFLSEEIIESIHRNEKVLNYFDVPIQHISDKILQSMGRHKKRNELIKLFEK 283

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           IR  +   AI +  +VGFPGE  +DF   +D V +I + +  SF +S    T    + EQ
Sbjct: 284 IR--KEPSAIRTTLMVGFPGEKAEDFEELVDFVKEIKFERMGSFIFSKEENTKSFTLPEQ 341

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQS 437
           +DE +K +R   L     E   +  +  +G+ +EVL+E+  KE    VGRS    P +  
Sbjct: 342 IDEQIKKQRQNELMTVQSEISKNIMEKYIGETLEVLLEE--KEDNVYVGRSYLDAPEIDG 399

Query: 438 VV----LNSKNHNIGDIIKVRITDVKISTLYGELV 468
            V       K    G+ +KV IT      L GE+V
Sbjct: 400 NVYIKNFGDKELTFGNFVKVTITGSYEYDLEGEIV 434


>gi|300770675|ref|ZP_07080554.1| MiaB family RNA modification enzyme [Sphingobacterium spiritivorum
           ATCC 33861]
 gi|300763151|gb|EFK59968.1| MiaB family RNA modification enzyme [Sphingobacterium spiritivorum
           ATCC 33861]
          Length = 455

 Score =  162 bits (411), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 128/455 (28%), Positives = 222/455 (48%), Gaps = 39/455 (8%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVN---SMDDADLIVLNTCHIREKAAEKVYS 82
           R  V + GC  N++DS  +         E V+   ++ + D++V+NTC   + A ++   
Sbjct: 27  RVNVITLGCSKNIHDSEVLMGQLKGNQMEVVHEASNIQNNDIVVINTCGFIDNAKQESID 86

Query: 83  FLGRIRNLKNSRIKEGGDL-LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
            +     L+ S +KE G +  V+V GC+++    E+      V+   G      LPELL 
Sbjct: 87  TI-----LQYSELKEQGKINKVIVTGCLSERYKPELQAEISSVDAYFGTND---LPELLS 138

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
                   +  DY  E   ER+      +       ++  I EGC++ C+FC +P  RG 
Sbjct: 139 S-------IGADYRHELLGERMLSTPLHF-------SYFKIAEGCNRPCSFCAIPLMRGK 184

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGL 260
            +S+ +  +V EA+ L  NG  E+ L+ Q++  +   GLD   K   SDLL +LS++ G+
Sbjct: 185 HVSKPMEDLVKEAKFLASNGTKELILIAQDLTYY---GLDIYGKRNLSDLLRNLSDVDGI 241

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
             +R   ++P      ++ A  +   +  YL +P+Q  SD +LKSM R  T  +   +++
Sbjct: 242 EWIRLQYAYPSGFPMDILDAMAERSNICNYLDMPLQHISDNMLKSMRRGTTKQKQIDLVN 301

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           +IR   PDIA+ +  I G+PGET+ DF+  ++ V++  + +   F YS    T   ++ +
Sbjct: 302 QIRDKVPDIALRTTLICGYPGETEQDFQEMLEWVEESRFDRLGCFTYSHEEKTHAYSLTD 361

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQ 436
            V E VK  R+  + +  +      N   +G+  +VL++K   +    +GR    SP + 
Sbjct: 362 DVPEEVKESRVEQIMEVQQGISYDINQEKIGKTYKVLVDK--VDGDYFIGRTEYDSPEVD 419

Query: 437 SVVLNSKNHN---IGDIIKVRITDVKISTLYGELV 468
           + VL S       IGD ++V+I   +   LYG +V
Sbjct: 420 NEVLISAKDTYARIGDFVQVKIDRAEDFDLYGTIV 454


>gi|154150044|ref|YP_001403662.1| MiaB-like tRNA modifying enzyme [Candidatus Methanoregula boonei
           6A8]
 gi|153998596|gb|ABS55019.1| MiaB-like tRNA modifying enzyme [Methanoregula boonei 6A8]
          Length = 430

 Score =  162 bits (411), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 132/450 (29%), Positives = 218/450 (48%), Gaps = 59/450 (13%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +R ++++YGC+ N  D+  +  +    G   V + +DAD +V+NTC +      ++   L
Sbjct: 23  KRVYIETYGCRYNFGDTANLVAVLKHYGSTVVPAPEDADAVVVNTCTVVGPTERRM---L 79

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R+  L+   +         V GC+   + E IL  +    V++ P T           R
Sbjct: 80  RRLSALQEKPL--------FVTGCMPLVQREAIL--AVCSPVIIHPDTI----------R 119

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
              R + T  S     E + IV               I +GC   CT+C+    RG   S
Sbjct: 120 EASRALMTVGS-----ESVGIVQ--------------IAQGCLGRCTYCITRRARGPLRS 160

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRL 263
             + ++ ++  + +  G  EI L  Q+ +AW   G D G++    DLL +LS I G  RL
Sbjct: 161 FPVQEIRNKIEEYVRAGAYEIQLTAQDTSAW---GRDTGQR--LPDLLTALSSIPGNFRL 215

Query: 264 RYTTSHPRD---MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
           R    +P     + D LI A    D L  ++HLPVQSGSDRIL+ M R +T  E+ +I+ 
Sbjct: 216 RVGMMNPATTLGILDDLIDAFAS-DRLFRFVHLPVQSGSDRILEQMGRGYTVREFEEIVS 274

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
             R   PDI+I++DFIVGFPGET++DF  +++L+ +I  A+    +YSPR   P +   E
Sbjct: 275 AFRGRYPDISIATDFIVGFPGETEEDFSRSLELIGRIRPAKVNVTRYSPR---PFTGPFE 331

Query: 381 QVD--ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSV 438
           + D  + VK +R   L     EQ V+ N   +G ++  ++ +  +  G ++ R+   Q +
Sbjct: 332 EKDFPDAVKKDRSRILNAYAEEQYVALNRPLLGTMVFCVVTEKIR-PGSVMARTASYQGL 390

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           V+  +  ++G    VR+   +     G+L+
Sbjct: 391 VIG-EELSVGTAAVVRLKKDRKYFFMGDLL 419


>gi|323137809|ref|ZP_08072884.1| MiaB-like tRNA modifying enzyme [Methylocystis sp. ATCC 49242]
 gi|322396812|gb|EFX99338.1| MiaB-like tRNA modifying enzyme [Methylocystis sp. ATCC 49242]
          Length = 385

 Score =  162 bits (410), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 121/414 (29%), Positives = 189/414 (45%), Gaps = 58/414 (14%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V ++GC++N+ DS   E++      ER       + I++NTC +  +A  +    + R+ 
Sbjct: 10  VVTFGCRLNMVDS---EELARRHEGER-------ETIIVNTCAVTGEATRQARQAIRRLH 59

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
                  +E  +  +VVAGC A+                + PQ +  +  +        R
Sbjct: 60  -------RERPEAEIVVAGCAAR----------------IDPQAFTSIEGV-------SR 89

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           V+      E    R +  +       G  AFL IQ GCD  CTFC++P  RG   S    
Sbjct: 90  VI-----AEQAQNRAAAAE------EGTRAFLAIQNGCDHSCTFCIIPLGRGASRSAPPQ 138

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
           ++V +AR L++ G  EI L G ++ ++              +   L EI  L RLR ++ 
Sbjct: 139 EIVAQARALVERGKQEIALTGVDLTSYDAD----GLRLGGLVRLLLREIPDLPRLRLSSI 194

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
              +  D LI A  + + L P+LHL +Q+G D ILK M RRH+  E  +    +R  RPD
Sbjct: 195 DCIEADDDLIVAAAEEERLCPHLHLSLQAGDDLILKRMKRRHSRAEAIRFCGELRDARPD 254

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           I   +DFI GFP ET++ F  T+ LV++ G      F +SPR GTP + M  QV   V  
Sbjct: 255 IVFGADFITGFPTETEEMFTRTLGLVEECGLTHLHVFPFSPRPGTPAARM-PQVAREVAK 313

Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK--LVGRSPWLQSVVL 440
           ER   L++          D   G+ + +L E+ G  +       R+P + + V+
Sbjct: 314 ERAARLREAGDAALARHLDRQKGKRLRLLTERGGMARAADFTPARTPGVAAGVM 367


>gi|194693708|gb|ACF80938.1| unknown [Zea mays]
          Length = 626

 Score =  162 bits (410), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 121/451 (26%), Positives = 212/451 (47%), Gaps = 34/451 (7%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           Q  +VK++GC  N  DS  M     + GY      + ADL ++NTC ++  +   + + +
Sbjct: 55  QTIYVKTFGCSHNQSDSEYMSGQLSAFGYAITEDPEGADLWLINTCTVKNPSQSAMTTLI 114

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            + +N             +VVAGCV Q  G + L+    ++++ G Q   R+ E++E   
Sbjct: 115 SKCKNANKP---------LVVAGCVPQ--GSQGLKELEGISII-GVQQIDRVVEVVEETL 162

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G  V           + L  +D    RK      L I  GC   CT+C   + RG   S
Sbjct: 163 KGHEVRLLSR------KTLPSLDLPKVRKNKFIEILPINVGCLGACTYCKTKHARGHLGS 216

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
            ++  +VD  + ++  GV EI L  ++  A+ G+ +        + + +   +     LR
Sbjct: 217 YTIDSLVDRVKTVVSEGVREIWLSSEDTGAY-GRDIGTNLPNLLNAIVAELPVDQSTMLR 275

Query: 265 YTTSHPRDMSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
              ++P  + + L +    L    +  +LH+PVQSGSD +LK+MNR +T  E+R+++D +
Sbjct: 276 IGMTNPPFILEHLKEIAAVLCHPCVYSFLHVPVQSGSDSVLKAMNREYTVGEFRKVVDTL 335

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
             + P + I++D I GFPGETD+DF  T++LV +  + Q    ++ PR GTP + M +  
Sbjct: 336 CELVPGMQIATDIICGFPGETDEDFSETVNLVKEYQFPQVHISQFYPRPGTPAARMKKVP 395

Query: 383 DENVKAERLLCLQKKLREQQVSFND-----ACVGQIIEVLIEKHGKEKGKLVGRSPWLQS 437
              VK        K+ RE    F          G++ ++ I +   +   LVG +     
Sbjct: 396 SNEVK--------KRSRELTSVFESFSPYQGMEGKVEKIWITEIASDGVHLVGHTKGYIQ 447

Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           V++ + +  +G     +IT V   +++G +V
Sbjct: 448 VLVTAPDSMLGTSADAKITSVGRWSVFGVVV 478


>gi|299133084|ref|ZP_07026279.1| MiaB-like tRNA modifying enzyme [Afipia sp. 1NLS2]
 gi|298593221|gb|EFI53421.1| MiaB-like tRNA modifying enzyme [Afipia sp. 1NLS2]
          Length = 417

 Score =  162 bits (410), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 115/376 (30%), Positives = 185/376 (49%), Gaps = 32/376 (8%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           ++GC++N+ +S  M     + G +        D +++NTC +  +A  +    + R+R  
Sbjct: 7   TFGCRLNLAESETMRAEADAAGVQ--------DAVIVNTCAVTNEAVAQARQTIRRLRRD 58

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF----- 145
             +R        ++V GC AQ +   +    P V+ V+G     R     +  R      
Sbjct: 59  HPAR-------KIIVTGCAAQTD-SRMFAEMPEVDRVLGNDDKMRAHAWRDTRRAFDLDD 110

Query: 146 GKRVVDTD-YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
           G++V   D  +V +    L  V+G ++ +    AF+ +Q GCD  CTFC++PY RG   S
Sbjct: 111 GEKVAVADIMAVREMAPHL--VEGFHSGQ--PRAFVQVQNGCDHRCTFCIIPYGRGNSRS 166

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
            ++   V++ RKL++ G  EI L G ++ ++ G  L G     + +   L  +  L RLR
Sbjct: 167 VAMGAAVEQVRKLVEGGCPEIVLTGVDITSY-GADLPGAPKLGALVKQILKHVPELKRLR 225

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
            ++    +    L+    D + LMP+LHL +Q+G D +LK M RRH+  +     D+ R 
Sbjct: 226 LSSIDSVEADRDLLDVIADDERLMPHLHLSLQAGDDLVLKRMKRRHSRADAIAFCDQARR 285

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           +RPDIA  +D I GFP ETDD F  ++ LV+         F YS R GTP + M  QV+ 
Sbjct: 286 LRPDIAFGADLIAGFPTETDDMFERSLALVEDCDLTFLHVFPYSKRPGTPAAKM-PQVEG 344

Query: 385 NVKAERLLCLQKKLRE 400
               ER     K+LR+
Sbjct: 345 RTIRER----AKRLRD 356


>gi|294809243|ref|ZP_06767959.1| MiaB-like protein [Bacteroides xylanisolvens SD CC 1b]
 gi|294443637|gb|EFG12388.1| MiaB-like protein [Bacteroides xylanisolvens SD CC 1b]
          Length = 418

 Score =  162 bits (410), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 114/396 (28%), Positives = 199/396 (50%), Gaps = 28/396 (7%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N  ++  +  +    G       + AD+ V+NTC + E A +K    + R+   
Sbjct: 16  TLGCKLNFSETSTIGKILREAGVRTARKGEKADICVVNTCSVTEMADKKCRQAIHRL--- 72

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL---ERARFGK 147
               +K+  D  VVV GC AQ +  ++ +    V+VV+G +    L + L   ++   G+
Sbjct: 73  ----VKQHPDAFVVVTGCYAQLKPGDVAKIDG-VDVVLGAEQKGELLQYLGDLQKHEKGE 127

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
            +  T   +       S  D    R R    FL +Q+GCD FC++C +P+ RG   + ++
Sbjct: 128 AITTTTKDIRSFSPSCSRGD----RTR---FFLKVQDGCDYFCSYCTIPFARGRSRNGTI 180

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
           + +V++AR+    G  EI L G N+  + GK   GE  +F DL+ +L +++G+ R R ++
Sbjct: 181 ASMVEQARQAAAEGGKEIVLTGVNIGDF-GK-TTGE--SFFDLVKALDQVEGIERYRISS 236

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
             P  ++D +I+        MP+ H+P+QSG D +L+ M RR+    +   + +I+ V P
Sbjct: 237 IEPNLLTDEIIEFVSHSRSFMPHFHIPLQSGCDEVLQLMRRRYDTALFASKVKKIKEVMP 296

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG---SNMLEQVDE 384
           D  I  D IVG  GET + F      +D +   Q   F YS R GT       ++   ++
Sbjct: 297 DAFIGVDVIVGTRGETPEYFEQAYQFIDGLDVTQLHVFSYSERPGTQALKIEYVVSPEEK 356

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
           + +++RLL L  +  +   +F    +GQ + VL+EK
Sbjct: 357 HQRSQRLLALSDQKTQ---AFYARHIGQTMPVLMEK 389


>gi|187779001|ref|ZP_02995474.1| hypothetical protein CLOSPO_02596 [Clostridium sporogenes ATCC
           15579]
 gi|187772626|gb|EDU36428.1| hypothetical protein CLOSPO_02596 [Clostridium sporogenes ATCC
           15579]
          Length = 445

 Score =  162 bits (410), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 132/439 (30%), Positives = 220/439 (50%), Gaps = 33/439 (7%)

Query: 31  SYGCQMNVYDSLRMEDMFF--SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           S GC  N  DS   E M +  ++  E V    +A  I++NTC   E A E+  + + ++ 
Sbjct: 10  SLGCDKNRIDS---ELMLYKLNEEAELVKDPKEAQAIIVNTCGFIETAKEESINTILQMA 66

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE-RARFGK 147
           + K +        ++VV GC+ Q    E+    P +++++G   Y +L E ++   + G+
Sbjct: 67  SYKKTH----NCKVLVVTGCLTQRYKGELKDLIPEMDIMLGVNDYDKLLESIKIFLKSGE 122

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNR---KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
           +      S   K+  + I +G  NR       TA++ I EGC+ FCT+C +P  RG   S
Sbjct: 123 K------SFYYKYSDIKINEG--NRILTTPTYTAYVRIAEGCNNFCTYCAIPRIRGKYRS 174

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           RS   ++ E   L   GV EI L+ Q+   + G  + G+K    +LL  +S+++G+  +R
Sbjct: 175 RSKENILKEVENLAKQGVKEIILIAQDTTMY-GIDIYGKK-VLHELLRDISKVEGVKWIR 232

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
               +P +++  LIK   + D +  YL LP+Q  S+ +LK M R+ T      II  +R 
Sbjct: 233 LLYCYPEEITKELIKEIKNNDKVCKYLDLPIQQISNSVLKRMGRKTTKETIINIIKELRK 292

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV-- 382
               I + +  IVGFPGET+++F    + V  I   +   FKYS   GT  + M +Q+  
Sbjct: 293 EIEGITLRTSLIVGFPGETEEEFSELKEFVSDIKLDKLGVFKYSKEEGTSAALMEDQIEE 352

Query: 383 -DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE--KHGKEKGKLVGRSPWLQSVV 439
             +  + E ++ LQ+K+ +     N   +G+I EV++E  K     G+    SP +   +
Sbjct: 353 EVKEKREEEIMILQQKISK---DINKEKIGKIYEVIVEGTKENMYSGRNYEMSPEIDGEI 409

Query: 440 LNSKNHN--IGDIIKVRIT 456
              K+ N  IGDIIKV++T
Sbjct: 410 YFEKDENVKIGDIIKVKVT 428


>gi|282600941|ref|ZP_05980225.2| 2-methylthioadenine synthetase [Subdoligranulum variabile DSM
           15176]
 gi|282570102|gb|EFB75637.1| 2-methylthioadenine synthetase [Subdoligranulum variabile DSM
           15176]
          Length = 465

 Score =  162 bits (410), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 120/462 (25%), Positives = 226/462 (48%), Gaps = 26/462 (5%)

Query: 3   LFIKLIGVAHMVSQIVD----QCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNS 58
           L ++  GV+ ++  +++    +  +  R    + GC++N  ++  +  +F   GY  V++
Sbjct: 7   LVLRFYGVSIIIRALLNTFDCKGTITMRVTFYTLGCKVNQNETGALAQLFEESGYTVVSN 66

Query: 59  MDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEIL 118
            + AD+ V+N+C +     +K   +L R +       +E    + V+ GC  QA  EE  
Sbjct: 67  EEAADVYVVNSCTVTNFGDQKSRKWLRRAK-------RENPGAVTVLTGCYPQAFPEEAS 119

Query: 119 RRSPIVNVVVGPQTYYRLPELLERARFGK--RVVDT-DYSVEDKFERLSIVDGGYNRKRG 175
             +   +VV G      +   ++    G+  RV+D   +   ++FE L + D      R 
Sbjct: 120 EIAE-ADVVTGSGNRRSILHDVQMVLNGEQERVIDIRPHEKGERFEELPM-DKFAEHTR- 176

Query: 176 VTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW 235
             AF+ +++GC++ C +CV+P  RG   SR  S ++ E  +L + G  EI L   ++ ++
Sbjct: 177 --AFVKVEDGCNRRCAYCVIPRARGPVRSREESSILQELHRLTEAGYKEIVLTAISLPSY 234

Query: 236 RGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPV 295
              G D    +  +L+   + + G+ RLR  +  P  + D +I     +  L P  HL +
Sbjct: 235 ---GTDS-GTSLVELVEKAAAVPGVERLRLGSLDPDMLHDEVILRLSRVKKLCPQFHLSL 290

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSV--RPDIAISSDFIVGFPGETDDDFRATMDL 353
           QSG D+ L++M R +T  ++ +I D++R      +++ ++D IVGFPGET++DF A+M  
Sbjct: 291 QSGCDKTLRAMRRPYTTAQFAKIADKLRHAFGAENVSFTTDVIVGFPGETEEDFEASMAF 350

Query: 354 VDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQI 413
           V    + +   F YS R GTP  +  +Q+ E+ K +R   +   +   +        G+ 
Sbjct: 351 VTGQHFLKVHVFPYSRREGTPAYDFPDQIPEHEKEDRSRRMTAAVEAVRAEEAVKMQGRT 410

Query: 414 IEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRI 455
            EVL+E          G +     V++ + +H+ GDI++V +
Sbjct: 411 AEVLLET-PLSATLFTGYTKQYLPVLVTAPDHHTGDIVQVTL 451


>gi|163734417|ref|ZP_02141857.1| MiaB-like tRNA modifying enzyme, hypothetical [Roseobacter
           litoralis Och 149]
 gi|161392425|gb|EDQ16754.1| MiaB-like tRNA modifying enzyme, hypothetical [Roseobacter
           litoralis Och 149]
          Length = 417

 Score =  162 bits (410), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 125/430 (29%), Positives = 199/430 (46%), Gaps = 35/430 (8%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  M+++    G         +D +V+NTC +  +A  K  S + ++R  
Sbjct: 8   TLGCRLNAYETEAMKELAAQSGL--------SDAVVVNTCAVTGEAVRKARSTIRKLR-- 57

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR--LPELLERARFGKR 148
                +E     ++V GC AQ E  +     P V+ V+G     +      L     G+ 
Sbjct: 58  -----RENPSARLIVTGCAAQTE-PQTFAAMPEVDAVIGNTEKMQGDTWNALAADFIGES 111

Query: 149 ---VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
               VD   SV +    L  +DG   R R   A++ +Q GCD  CTFC++PY RG   S 
Sbjct: 112 EAVQVDDIMSVTETAGHL--IDGFGTRSR---AYVQVQNGCDHRCTFCIIPYGRGNSRSV 166

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           +   V+D+ ++L+D G  E+ L G ++ +W G  L         ++  L  +  L RLR 
Sbjct: 167 AAGVVIDQIKRLVDKGFNEVVLTGVDLTSW-GADLPAAPKLGDLVMRILRLVPDLPRLRI 225

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
           ++    ++ + L+ A      LMP+LHL +Q G D ILK M RRH   +  +     R +
Sbjct: 226 SSIDSIEVDENLMLAIATEPRLMPHLHLSLQHGDDMILKRMKRRHLRDDAIRFAQDARRL 285

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
           RPD+   +D I GFP ETD  F  ++ LV +        F YS R GTP + M   V   
Sbjct: 286 RPDMTFGADIIAGFPTETDAMFENSLALVQECDLTWLHVFPYSARPGTPAARM-PAVHGQ 344

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445
           +  ER   L+     Q      A VG+   VL+E        ++GR+     V +++   
Sbjct: 345 IIKERASQLRAAGDAQVQRHLSAQVGKTHSVLMES------PVMGRTEQFTEVQVSTPQS 398

Query: 446 NIGDIIKVRI 455
             G I+ +R+
Sbjct: 399 E-GTIVSLRV 407


>gi|124514462|gb|EAY55975.1| RNA modification enzyme, MiaB family [Leptospirillum rubarum]
          Length = 483

 Score =  162 bits (410), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 119/415 (28%), Positives = 204/415 (49%), Gaps = 30/415 (7%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ D+  M      +G+  +  +++A++IV+NTC     A ++    L     L
Sbjct: 41  SLGCPKNLVDTETMIHSLSEKGFRVIPDLEEAEVIVVNTCSFVTDARKESIDTL-----L 95

Query: 91  KNSRIKEGGDLLVVVA-GCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149
           + ++ KE G   ++V  GC+     EE+    P V++++ P     + ELL        +
Sbjct: 96  EMAQYKENGKAKILVGTGCLVSRYREELPGLLPEVDMLLSPSEEVSIGELLSSPESKTSL 155

Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVT---AFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
             T   +             + RKR      A+L I EGCD  C+FC +P +RG+++SR+
Sbjct: 156 PSTPLILPSSIP--------FRRKRLTPNHRAYLKISEGCDHTCSFCAIPLSRGLQVSRT 207

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
              +++E R + D GV E+TL+ Q++  +     DGE      LL  +  I  +  +R  
Sbjct: 208 RESLLEEVRMMADEGVREVTLIAQDLTRYGSDLEDGEG--LPRLLEEIDRIGRIPWVRLL 265

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
            ++P  ++D L+K   D   ++ YL +P Q  S  +LK MNR        ++IDRIR + 
Sbjct: 266 YAYPTQVTDRLLKVIRDSSTILKYLDIPFQHVSGTVLKRMNRPGNRESTMRLIDRIRRIL 325

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           PDI + + FIVGFPGET+++F    + +          F +S   GTP  +M  Q+   +
Sbjct: 326 PDITLRTTFIVGFPGETEEEFLEIEEFLKWSRLDHVGVFPFSREEGTPSFDMDGQIPSRL 385

Query: 387 KAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-----KGKLVGRSP 433
           K +   RL+ +QK +  ++       +G+++ VLIE   ++      G+L G +P
Sbjct: 386 KTQRRKRLMGVQKAISLEK---KKDWLGKVMPVLIEGPSEQSPLILSGRLPGMAP 437


>gi|60683077|ref|YP_213221.1| hypothetical protein BF3627 [Bacteroides fragilis NCTC 9343]
 gi|60494511|emb|CAH09308.1| conserved hypothetical protein [Bacteroides fragilis NCTC 9343]
          Length = 439

 Score =  162 bits (410), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 115/390 (29%), Positives = 188/390 (48%), Gaps = 16/390 (4%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N  ++  +  +    G       + ADL ++NTC + E A +K    + R+   
Sbjct: 16  TLGCKLNFSETSTIGKILREAGVRTARKGEKADLCIVNTCSVTEMADKKCRQAIHRL--- 72

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               +K+     VVV GC AQ +  ++ +    V+VV+G +    L + L      K   
Sbjct: 73  ----VKQHPGAFVVVTGCYAQLKPGDVAKIEG-VDVVLGAEQKKDLLQYL--GDLHKHEG 125

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
              Y+   K   +       +R      FL +Q+GCD FC++C +P+ RG   + +++ +
Sbjct: 126 GEAYTTATK--DIRSFAPSCSRGDRTRFFLKVQDGCDYFCSYCTIPFARGRSRNGTIASL 183

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270
           V++AR+    G  EI L G N+  + GK   GE  TF DL+ +L  ++G+ R R ++  P
Sbjct: 184 VEQARQAAAEGGKEIVLTGVNIGDF-GKST-GE--TFFDLVKALDRVEGIERYRISSIEP 239

Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330
             ++D +I+        MP+ H+P+QSGSD +L+ M RR+    +   I +I+ V PD  
Sbjct: 240 NLLTDEIIEYVSRSRSFMPHFHIPLQSGSDEVLQLMRRRYGTELFASKIAKIKEVMPDAF 299

Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER 390
           I  D IVG  GET   F    + +  +   Q   F YS R GT    +   V    K +R
Sbjct: 300 IGVDVIVGTRGETAGYFEKAYEFIHGLDVTQLHVFSYSERPGTQALKIDHVVTPEEKHQR 359

Query: 391 LLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
             CL     E+  +F    +GQ + VL+EK
Sbjct: 360 SQCLLALSDEKTKAFYARYIGQTMPVLMEK 389


>gi|91201962|emb|CAJ75022.1| similar to 2-methylthioadenine synthetase [Candidatus Kuenenia
           stuttgartiensis]
          Length = 437

 Score =  162 bits (410), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 122/435 (28%), Positives = 217/435 (49%), Gaps = 29/435 (6%)

Query: 33  GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLK- 91
           GC  N+ D+  M     + G       +DA+++V+NTC   + + ++    + ++  LK 
Sbjct: 16  GCTKNLVDAEEMLGRIAANGSTICQYPEDAEVLVVNTCGFIDDSKKESIDMIFKMAKLKE 75

Query: 92  NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVD 151
           N++ K+     ++V GC+AQ    E+    P ++ VVG + + ++  L      GKR +D
Sbjct: 76  NAQCKK-----LIVTGCLAQRYSAELKSEIPEIDDVVGLKDFEKITHLT-----GKRQMD 125

Query: 152 --TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209
             T Y  +D   R+ +    Y       ++L I +GCD  CT+C +P  RG  +SRS+  
Sbjct: 126 NSTIYQGDDWRNRIRLTPKHY-------SYLRISDGCDNRCTYCAIPGIRGNFMSRSIEN 178

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYTTS 268
           +++E+R++   GV EI ++ Q+  ++   GLD   K     LL  ++ I+G+  +R   +
Sbjct: 179 ILEESRQMASEGVKEINIISQDTTSY---GLDIYGKQMLHVLLEKIAAIEGIQWIRLLYT 235

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
           HP      LI    + + +  Y+ LP+Q  +D IL  M R  T      +I+ +R     
Sbjct: 236 HPGHFYPELINTINEHETICKYIDLPIQHINDTILGKMGRNTTRKSIETLINNLRRSIRS 295

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           I + +  IVGFPGETD+ ++  ++ + K  + +   F YS    TP +   +QV + VK 
Sbjct: 296 IVLRTSVIVGFPGETDEQYQELLEFIKKTKFERLGVFAYSKEENTPAAKFKKQVGKKVKQ 355

Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQ-SVVLNSK 443
           ERL  +    RE     N   +G+   V++++     G L+GR+    P +   V +N K
Sbjct: 356 ERLNEIMLAQREIVWENNKNLIGKKASVIVDEKEVVSGMLIGRTSGDAPEVDGKVFINDK 415

Query: 444 NHNIGDIIKVRITDV 458
              +G+I ++ I++V
Sbjct: 416 QIKVGEIRELVISNV 430


>gi|92096943|gb|AAI14872.1| CDKAL1 protein [Bos taurus]
          Length = 416

 Score =  162 bits (410), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 109/376 (28%), Positives = 185/376 (49%), Gaps = 33/376 (8%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           Q+ +++++GC  N  D   M     + GY+   +  DADL +LN+C ++  A +    F 
Sbjct: 63  QKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAED---HFR 119

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             I+  +    K      +V+AGCV QA+  +   +      ++G Q   R+ E++E   
Sbjct: 120 NSIKKAQEENKK------IVLAGCVPQAQPRQDYLKG---LSIIGVQQIDRVVEVVEETI 170

Query: 145 FGKRVVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            G  V       +D  +RL  + +D    RK  +   ++I  GC   CT+C   + RG  
Sbjct: 171 KGHSVRLLGQK-KDNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNL 229

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI----- 257
            S  + ++VD A++    GVCEI L  ++  A+ G+ +     +   LL+ L E+     
Sbjct: 230 ASYPIDELVDRAKQSFQEGVCEIWLTSEDTGAY-GRDIGS---SLPALLWKLVEVIPEGA 285

Query: 258 ---KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
               G+    Y   H  +M+  L         +  +LH+PVQS SD +L  M R +   +
Sbjct: 286 MLRLGMTNPPYILEHLEEMAKILHHPR-----VYAFLHIPVQSASDTVLMEMKREYCVAD 340

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
           +++++D ++   P I I++D I GFPGETD DF+ T+ LV++  +   F  ++ PR GTP
Sbjct: 341 FKRVVDFLKDKVPGITIATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTP 400

Query: 375 GSNMLEQVDENVKAER 390
            + M EQV   VK ++
Sbjct: 401 AAKM-EQVPAQVKKKK 415


>gi|117924283|ref|YP_864900.1| MiaB-like tRNA modifying enzyme [Magnetococcus sp. MC-1]
 gi|117608039|gb|ABK43494.1| MiaB-like tRNA modifying enzyme [Magnetococcus sp. MC-1]
          Length = 467

 Score =  162 bits (410), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 119/461 (25%), Positives = 221/461 (47%), Gaps = 48/461 (10%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +R  + + GC++N ++   M+      GY    + + A+++++NTC +  ++  +    +
Sbjct: 9   KRIAIINMGCRVNQFEGAAMQAEAAQMGYVSATADETAEVVIVNTCSVTAQSDSQARKQI 68

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPE---LLE 141
            RI        +E     ++V GC AQ    ++L   P V +V+G Q    + +   +LE
Sbjct: 69  RRI-------ARENPHAQILVTGCYAQ-RNPQLLAELPGVALVLGNQEKRGIAKELAILE 120

Query: 142 RARFGKRVVD------------------TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQ 183
                +                       + +   ++E   +V     + +   AF+ +Q
Sbjct: 121 AKPLAQPATQQVAPMPRTPLRQSGLEPLAEEAPLPRWEEGPLVAADAFKGQA-RAFVQVQ 179

Query: 184 EGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
            GCDK CTFCV+P  RG   S+S   V+ +A+  +  G  E+ L G ++ ++ G+   G+
Sbjct: 180 NGCDKRCTFCVIPALRGPSRSQSPQWVMAQAQSFLQAGYQELVLTGIDLGSY-GREQTGQ 238

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
             + + L+  L  + GL RLR ++  P DM   LI   G    L P+LHL +QSG D++L
Sbjct: 239 GWSLARLVEQLLSLDGLARLRLSSIDPMDMEPALIALMGRAPKLCPHLHLSMQSGDDQVL 298

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           K M+R  T     + + ++R+VRP++ + +D IVGFP E++  F  + D+V ++  +   
Sbjct: 299 KRMHRGSTRQALLERVAQLRAVRPELVLGADLIVGFPTESEAAFEQSCDMVRRLEISLLH 358

Query: 364 SFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQII--------- 414
            F+YS R  TP + +  +   +V+  R+     K R +Q++     V Q +         
Sbjct: 359 IFRYSARPDTPAAAIPRRF--HVEDTRI-----KARAKQLAMVGGAVWQQVAQRRVGCHD 411

Query: 415 EVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRI 455
            VL+E+    +G+L+G++     VV+ +     G ++ V I
Sbjct: 412 RVLVEQ-SDAQGRLLGKNDSFFDVVVENTPATAGTLLPVEI 451


>gi|225850050|ref|YP_002730284.1| hypothetical protein PERMA_0494 [Persephonella marina EX-H1]
 gi|225646246|gb|ACO04432.1| conserved hypothetical protein [Persephonella marina EX-H1]
          Length = 432

 Score =  162 bits (409), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 127/459 (27%), Positives = 227/459 (49%), Gaps = 53/459 (11%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V S GC  N+ D+  +     +   + V+ ++DA++I++NTC   ++A E+  + +    
Sbjct: 5   VISLGCPKNLVDTELILGRLKTDKVQIVSDLNDAEVILVNTCGFIDEAKEESVNTI---- 60

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE------R 142
            L+ +R+KE G+  +VV GC+ +   +E+ +  P V++ +  +    +PE L        
Sbjct: 61  -LEVARLKENGNKKIVVTGCLVERYKKELEKEIPEVDMFIDLKEELLIPEKLGIKVDNFS 119

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           + + KR++ T                        TA+L I EGCD  C FC +P  RG  
Sbjct: 120 SPYQKRLLTTPKH---------------------TAYLKISEGCDHTCGFCAIPSIRGKH 158

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR++  +V+EA++L D GV E+ ++ Q+  ++ G  + G K    +L+  L +I+G+  
Sbjct: 159 RSRTIEDIVEEAKRLADLGVKELNIVSQD-TSYYGTDIYG-KPMLWELISRLEKIEGVRW 216

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R    +P  +++  IK   D + ++ Y  +P+Q   DRILK M R +      +I++  
Sbjct: 217 IRLYYLYPTTVTEDFIKRMADSEKVVKYFEMPIQHTEDRILKDMMRGYRKSRIEKILEWK 276

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG-SNMLEQ 381
               P+ A+ S  IVGFP ET+ DF +  D + +  +     FKYS   GTP  +   + 
Sbjct: 277 DRYIPEAAVRSAVIVGFPTETERDFESMKDFIKQAKFDWLGVFKYSHEEGTPAYTKYRDS 336

Query: 382 VDENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL-VGRSPWLQS 437
           + E  K  R   +  LQ+ + E++   N   +G+ IEV+++   +E   L VGR+   +S
Sbjct: 337 IPEEEKIRRKNEITQLQEGITEEK---NRDLIGKEIEVIVDGFSEEWETLPVGRT--YRS 391

Query: 438 V--------VLNSKNHNIGDIIKVRITDVKIS-TLYGEL 467
                    +   +   +GD  K++I D+  S  L GE+
Sbjct: 392 AFEIDGIVYIETERPVKVGDFAKLKIKDLADSYDLVGEI 430


>gi|315608055|ref|ZP_07883048.1| 2-methylthioadenine synthetase [Prevotella buccae ATCC 33574]
 gi|315250524|gb|EFU30520.1| 2-methylthioadenine synthetase [Prevotella buccae ATCC 33574]
          Length = 450

 Score =  162 bits (409), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 116/397 (29%), Positives = 188/397 (47%), Gaps = 17/397 (4%)

Query: 33  GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92
           GC++N  ++     +    G       + AD+ ++NTC + E A  K    + R+     
Sbjct: 18  GCKLNFSETSTFGKLLSDIGVVAAQKGERADICLINTCSVTEVADHKCRQAIHRM----- 72

Query: 93  SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG---KRV 149
             ++E     VVV GC AQ E E++ R    V++V+G      L + L  A  G   +  
Sbjct: 73  --VRENPGAFVVVTGCYAQLESEKVSRIDG-VDLVLGSNEKADLIQYLNDAFVGGVRQEA 129

Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209
           +   +SV+ K   +       +R      FL +Q+GC+ FCT+C +PY RG   + S++ 
Sbjct: 130 LHRHHSVKTK--DIKSFQPSCSRGNRTRYFLKVQDGCNYFCTYCTIPYARGFSRNPSIAS 187

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSH 269
           +V++AR+    G  EI L G N+  +     +    +F DL+ +L E++G+ R R ++  
Sbjct: 188 LVEQAREAALEGGREIVLTGVNIGDFGATTHE----SFLDLVKALDEVEGIERFRISSLE 243

Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329
           P   SD L++        MP+ H+P+QSGSD +LK M+RR+    +   I+ I+   PD 
Sbjct: 244 PDLCSDELVEYCSISRAFMPHFHIPLQSGSDEVLKLMHRRYDRALFAHKINLIKEKMPDA 303

Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAE 389
            I  D +VG  GE  + F    D ++ +   Q   F YS R GT   ++   VD+  K +
Sbjct: 304 FIGVDVMVGCRGEKPEYFEDCYDFLESLPVTQLHVFPYSERPGTSALSIPYVVDDKEKRQ 363

Query: 390 RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG 426
           R+  L      +   F    +G    VL EK  K K 
Sbjct: 364 RVKRLLDMSDRKTEEFYAKYIGTESVVLFEKAAKGKA 400


>gi|288925016|ref|ZP_06418952.1| 2-methylthioadenine synthetase [Prevotella buccae D17]
 gi|288338206|gb|EFC76556.1| 2-methylthioadenine synthetase [Prevotella buccae D17]
          Length = 450

 Score =  162 bits (409), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 116/397 (29%), Positives = 187/397 (47%), Gaps = 17/397 (4%)

Query: 33  GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92
           GC++N  ++     +    G       + AD+ ++NTC + E A  K    + R+     
Sbjct: 18  GCKLNFSETSTFGKLLSDIGVVAAQKGERADICLINTCSVTEVADHKCRQVIHRM----- 72

Query: 93  SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG---KRV 149
             ++E     VVV GC AQ E E++ R    V++V+G      L + L  A  G   +  
Sbjct: 73  --VRENPGAFVVVTGCYAQLESEKVSRIDG-VDLVLGSNEKADLIQYLNDAFVGGVRQEA 129

Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209
           +   +SV+ K   +       +R      FL +Q+GC  FCT+C +PY RG   + S++ 
Sbjct: 130 LHRHHSVKTK--DIKSFQPSCSRGNRTRYFLKVQDGCSYFCTYCTIPYARGFSRNPSIAS 187

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSH 269
           +V++AR+    G  EI L G N+  +     +    +F DL+ +L E++G+ R R ++  
Sbjct: 188 LVEQAREAALEGGREIVLTGVNIGDFGATTHE----SFLDLVKALDEVEGIERFRISSLE 243

Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329
           P   SD L++        MP+ H+P+QSGSD +LK M+RR+    +   I+ I+   PD 
Sbjct: 244 PDLCSDELVEYCSISRAFMPHFHIPLQSGSDEVLKLMHRRYDRALFAHKINLIKEKMPDA 303

Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAE 389
            I  D +VG  GE  + F    D ++ +   Q   F YS R GT   ++   VD+  K +
Sbjct: 304 FIGVDVMVGCRGEKPEYFEDCYDFLESLPVTQLHVFPYSERPGTSALSIPYVVDDKEKRQ 363

Query: 390 RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG 426
           R+  L      +   F    +G    VL EK  K K 
Sbjct: 364 RVKRLLDMSDRKTEEFYAKYIGTESVVLFEKAAKGKA 400


>gi|52840922|ref|YP_094721.1| ribosomal protein S12 methylthiotransferase [Legionella pneumophila
           subsp. pneumophila str. Philadelphia 1]
 gi|81378010|sp|Q5ZXP6|RIMO_LEGPH RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|52628033|gb|AAU26774.1| Fe-S oxidoreductase [Legionella pneumophila subsp. pneumophila str.
           Philadelphia 1]
          Length = 435

 Score =  162 bits (409), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 134/462 (29%), Positives = 218/462 (47%), Gaps = 59/462 (12%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC   + DS R+     +QGYE V +  DA ++V+NTC   + A ++       +  +
Sbjct: 9   SLGCPKALVDSERIITQLKAQGYELVPTYQDAGVVVINTCGFIDSAVQE------SLDTI 62

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
           K +  + G    V+V GC+  A+ + I    P V  + G   Y             + VV
Sbjct: 63  KEAMAENGR---VIVTGCLG-AKADVIKNACPDVLHISGAHAY-------------EEVV 105

Query: 151 DTDYSV----EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           +  +       D F +L I   G        A+L I EGC++ CTFC++P  RG   S  
Sbjct: 106 NAVHQYLPPPADPFTQL-IPPQGIKLTPRHYAYLKISEGCNQKCTFCIIPTMRGKLQSYP 164

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYSLS 255
           ++Q++ EA+KL   GV E+ ++ Q+ +A           W+GK ++     F DL   L 
Sbjct: 165 MAQILTEAKKLKQAGVKELLVISQDTSAYGVDTRYQQVEWQGKTVNTR---FYDLCEQLG 221

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
           E+   VRL Y   +P    D ++    D  +++PYL +P+Q  + RILK+M R  ++   
Sbjct: 222 ELGIWVRLHYVYPYPH--VDDIVPLMRD-GLILPYLDIPLQHANSRILKAMKRPASSENT 278

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
              I   R + PDI + S FIVGFPGET+++F   +  + +    +   FKYSP  G   
Sbjct: 279 LLRIASWREICPDITLRSTFIVGFPGETEEEFSELLAFLKEAQLDRVGCFKYSPVEGAKA 338

Query: 376 SNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS 432
           +++   V E++K E   R + +Q ++   ++      +G    VLI++   +  +++ RS
Sbjct: 339 NDLDNPVSEDIKEERYHRFMQVQAEISRNKLKNK---IGSTQTVLIDEINDD--QIIARS 393

Query: 433 ----PWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468
               P +  +V   K   I  G   +V ITD     LY  LV
Sbjct: 394 KSDAPEIDGLVYLPKTSGITVGSFAEVVITDSDDYDLYASLV 435


>gi|56695195|ref|YP_165541.1| MiaB-like tRNA modifying enzyme [Ruegeria pomeroyi DSS-3]
 gi|56676932|gb|AAV93598.1| MiaB-like tRNA modifying enzyme [Ruegeria pomeroyi DSS-3]
          Length = 418

 Score =  162 bits (409), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 113/366 (30%), Positives = 179/366 (48%), Gaps = 29/366 (7%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  M+++    G      +D+A  +++NTC +  +A  K    + R+R  
Sbjct: 8   TLGCRLNAYETEAMKELSAQAG------LDNA--VIVNTCAVTAEAVRKARQEIRRLR-- 57

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER--ARFGKR 148
                +E     ++V GC AQ E E     +  V+ V+G     R PE  +   A F   
Sbjct: 58  -----RENPTARLIVTGCAAQTEPETFTAMAE-VDAVIGNTEKMR-PETWKSMTADFIGE 110

Query: 149 V----VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
                VD   SV +    L  +DG   R R   A++ +Q GCD  CTFC++PY RG   S
Sbjct: 111 TEAVQVDDIMSVTETAGHL--IDGFGTRSR---AYVQVQNGCDHRCTFCIIPYGRGNSRS 165

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
                VVD+ ++L+D G  E+ L G ++ +W G  L  +      ++  L  +  L RLR
Sbjct: 166 VPAGVVVDQIKRLVDRGYNEVVLTGVDLTSW-GADLPAQPKLGDLVMRILRLVPDLPRLR 224

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
            ++    ++ + L++       LMP+LHL +Q G D ILK M RRH   +  +  +  R 
Sbjct: 225 ISSIDSIEVDENLMQGIATEPRLMPHLHLSLQHGDDLILKRMKRRHLRDDAIRFAEEARR 284

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           +RP++   +D I GFP ET+  F  ++ LVD         F YS R GTP + +  QV+ 
Sbjct: 285 LRPEMTFGADIIAGFPTETEAHFENSLKLVDDCHLTWLHVFPYSRREGTPAAKIPSQVNG 344

Query: 385 NVKAER 390
            +  ER
Sbjct: 345 KIIKER 350


>gi|289524260|ref|ZP_06441114.1| MiaB tRNA modifying enzyme-like protein [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
 gi|289502916|gb|EFD24080.1| MiaB tRNA modifying enzyme-like protein [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
          Length = 435

 Score =  162 bits (409), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 119/451 (26%), Positives = 212/451 (47%), Gaps = 27/451 (5%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +R F+ S GC  N  DS ++     S+G+      + AD+I++NTC     A ++    +
Sbjct: 3   ERVFIVSLGCAKNQVDSEKLAGAMTSKGFGFAEDFESADIILVNTCAFIGPAVKESIDVI 62

Query: 85  GRIRNLKN-SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
             +  LK   ++K+ G     V GC+    G+++ R  P V++    + +  +   L   
Sbjct: 63  LHLEELKGLGKVKKIG-----VLGCLLNRYGDDLKREFPTVDIWARSEEWEHVLSCL--- 114

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
                V DT +S   +        G        + +L I EGC+  C++C +P  RG   
Sbjct: 115 ----GVNDTSFSPCSR--------GFIPETTTWSRYLKITEGCNNCCSYCTIPSIRGHLR 162

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR + ++++EA  L+  G  EI L+GQ++ A+ G   DG       L      +   + +
Sbjct: 163 SRPVDEILEEAENLVLQGAKEICLVGQDLTAY-GMDWDGSSHLVELLDLLEKHVPDGMWI 221

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R    HP  +++  ++       ++ YL +P+Q   D IL  MNR  T  + R+I    R
Sbjct: 222 RPLYLHPMRVNEKFLERIASYKNVLRYLDIPIQHVDDEILSCMNRNVTESDLRRIFSYAR 281

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
            + PD A+ +  IVGFPGE +  F+  +  ++ +   +  +F YSP  GT  + + +QV 
Sbjct: 282 KIDPDFALRTTIIVGFPGEDNVKFKKVLRFLEDMEIDRVGAFLYSPEEGTKAAGIKKQVS 341

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK---GKLVGRSPWLQSVVL 440
           + VK +RL  L +   +  +S  +  +G+ ++V++E+   E    G+    +P +  V+ 
Sbjct: 342 DEVKRKRLDMLMELQADISLSRQERFLGRRLKVIVEERNYEDCVLGRSFREAPEVDGVIA 401

Query: 441 --NSKNHNIGDIIKVRITDVKISTLYGELVV 469
               K+   GD + VRI  V    +  E+VV
Sbjct: 402 IKGVKDVPCGDFLNVRINAVTEHDMEAEVVV 432


>gi|186475738|ref|YP_001857208.1| ribosomal protein S12 methylthiotransferase [Burkholderia phymatum
           STM815]
 gi|238065310|sp|B2JG80|RIMO_BURP8 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|184192197|gb|ACC70162.1| MiaB-like tRNA modifying enzyme YliG [Burkholderia phymatum STM815]
          Length = 463

 Score =  162 bits (409), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 132/483 (27%), Positives = 219/483 (45%), Gaps = 67/483 (13%)

Query: 21  CIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKV 80
            + P+  FV S GC   + DS ++     ++GYE   + D ADL+V+NTC   ++A ++ 
Sbjct: 12  ALTPKVGFV-SLGCPKALVDSEQIITQLRAEGYEISGTYDGADLVVVNTCGFIDEAVQES 70

Query: 81  YSFLGRIRNLKNSRIKEGGDLLVVVAGCVA---QAEGEEILRR-SPIVNVVVGPQTYYRL 136
              +G   N +N +        V+V GC+     A G  ++    P V  V GP     +
Sbjct: 71  LDAIGEALN-ENGK--------VIVTGCLGAKQSASGSNLIEEVHPKVLAVTGPHAVGEV 121

Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
            + +  +   K          D F  L    G     R   A+L I EGC+  CTFC++P
Sbjct: 122 MQAV-HSHLPKP--------HDPFVDLVPAAGVKLTPRHY-AYLKISEGCNHRCTFCIIP 171

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKC 245
             RG  +SR +++V+ EA  L  +GV E+ ++ Q+ +A           W GK +   K 
Sbjct: 172 SMRGDLVSRPVAEVMLEAENLFKSGVKELLVISQDTSAYGVDVKYRTGFWNGKPI---KT 228

Query: 246 TFSDLLYSLSEIKG----LVRLRYTTSHPR------DMSDCLIKAHGDLDVLMPYLHLPV 295
             +DL+ +L E+       VRL Y   +P        M++   K H     ++PYL +P 
Sbjct: 229 RMTDLVGALGELAAQYGAWVRLHYVYPYPSVDEVIPMMAEGSFKGH-----VLPYLDVPF 283

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVR---PDIAISSDFIVGFPGETDDDFRATMD 352
           Q     +LK M R   A    ++++R+R+ R   PD+ I S FI GFPGET + F   +D
Sbjct: 284 QHAHPEVLKRMKRPANA---EKVLERVRAWREICPDLTIRSTFIAGFPGETQEQFETLLD 340

Query: 353 LVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQ 412
            + +    +   F YSP  G   + +   + + V+  R     +   +         VG+
Sbjct: 341 FIREAELDRVGCFAYSPVEGATANELDGALPDEVREARRARFMEVAEQVSAKRMARKVGK 400

Query: 413 IIEVLIEKHGKEK--GKLVGRSPWLQSVVL------NSKNHNIGDIIKVRITDVKISTLY 464
            ++VL+++   +   G+    +P +  VV        SK + +GD + V+IT      L+
Sbjct: 401 TLKVLVDEINPDGGIGRTAADAPEIDGVVYIAPATKASKRYKVGDFVSVKITGADGHDLW 460

Query: 465 GEL 467
           GE+
Sbjct: 461 GEV 463


>gi|218128607|ref|ZP_03457411.1| hypothetical protein BACEGG_00177 [Bacteroides eggerthii DSM 20697]
 gi|317475589|ref|ZP_07934851.1| MiaB-like tRNA modifying enzyme [Bacteroides eggerthii 1_2_48FAA]
 gi|217989209|gb|EEC55523.1| hypothetical protein BACEGG_00177 [Bacteroides eggerthii DSM 20697]
 gi|316908293|gb|EFV29985.1| MiaB-like tRNA modifying enzyme [Bacteroides eggerthii 1_2_48FAA]
          Length = 443

 Score =  162 bits (409), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 114/390 (29%), Positives = 189/390 (48%), Gaps = 16/390 (4%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N  ++  +  +    G       + AD+ V+NTC + E A +K    + R+   
Sbjct: 16  TLGCKLNFSETSTIGKILREAGVRTARKGEKADICVVNTCSVTEVADKKCRQAIHRL--- 72

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               +K+     VVV GC AQ +  +++ +   V+VV+G +    L   L      K   
Sbjct: 73  ----VKQHPGAFVVVTGCYAQLK-PDVVAKIEGVDVVLGAEQKKDLLRYL--GDLQKHET 125

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
              Y+     + +       +R      FL +Q+GCD +C++C +P+ RG   + S++ +
Sbjct: 126 GEAYT--SALKDIRSFAPSCSRGDRTRFFLKVQDGCDYYCSYCTIPFARGRSRNGSVASL 183

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270
           V++AR+    G  EI L G N+  + GK   GE  TF DL+ +L E++G+ R R ++  P
Sbjct: 184 VEQARQAAAEGGKEIVLTGVNIGDF-GK-TTGE--TFFDLVKALDEVEGIERYRISSIEP 239

Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330
             ++D +I+        MP+ H+P+QSGSD +LK M RR+    +   + +I+ V PD  
Sbjct: 240 NLLTDEIIEFVSRSKRFMPHFHIPLQSGSDEVLKLMRRRYDTALFASKVKKIKEVMPDAF 299

Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER 390
           I  D IVG  GET++ F      +  +   Q   F YS R GT    +   V    K  R
Sbjct: 300 IGVDVIVGTRGETEEYFEQAYRFIQGLDVTQLHVFSYSERPGTQALKIEHVVSSEEKHRR 359

Query: 391 LLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
              L +   E+  SF    +GQ + VL+E+
Sbjct: 360 SQLLLELSEEKTRSFYARHIGQTMPVLLER 389


>gi|330837149|ref|YP_004411790.1| Ribosomal protein S12 methylthiotransferase rimO [Spirochaeta
           coccoides DSM 17374]
 gi|329749052|gb|AEC02408.1| Ribosomal protein S12 methylthiotransferase rimO [Spirochaeta
           coccoides DSM 17374]
          Length = 458

 Score =  162 bits (409), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 122/451 (27%), Positives = 220/451 (48%), Gaps = 40/451 (8%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHI----REKAAEKV 80
           ++ ++++ GC  N  D+  M     S G+ RV+   +A+L+V+NTC      R+++ +  
Sbjct: 12  KKVYIENLGCAKNQVDAETMLGYLESDGWSRVDDAANAELVVVNTCSFIEAARKESIDAF 71

Query: 81  YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140
           +S   R  + K           VV+ GC+AQ   + +    P  + + G +   ++   +
Sbjct: 72  FSLKARCPDAK-----------VVMTGCLAQRYADSLAADLPEADGIFGNRDLTQVLPFV 120

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
                G R V          E +  +D  GY      ++++ I EGC+  C FC +P  R
Sbjct: 121 RSVLDGARPVRIPDHASQGHEFVERMDRLGYPG----SSYVKISEGCNHTCAFCAIPGIR 176

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIK 258
           G  +SRS+  V+ E R LI +GV EI L+ Q++ ++   G+D G K  F DL+ S++ + 
Sbjct: 177 GPLVSRSMEDVLAETRSLISDGVREINLIAQDLASF---GVDNGGKSRFCDLVESIAAVP 233

Query: 259 G--LVRLRY--TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
           G   VRL Y    ++PR ++D +  + G +   +PY  LP Q  +  +L++M R  T   
Sbjct: 234 GNFFVRLLYIYPDAYPRRLTDIIAASEGKI---LPYFDLPFQHAAVPVLRAMGRAGTPES 290

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
           Y  +ID IRS  P     S F++GFPGE   +F   +D +         SF YS   GT 
Sbjct: 291 YLALIDSIRSRIPQAVFRSTFMLGFPGENRAEFDVLLDFLKDARLDWVGSFIYSREEGTS 350

Query: 375 GSNMLEQVDENVKAERLLCLQKKL--REQQVSFN--DACVGQIIEVLIEKHGKEK----G 426
             +M  +       ++    Q++L   +++++F   +  VG + +VL+E+  + +    G
Sbjct: 351 AWDMRGETAHRKAVKQAALWQQELIALQEEITFTRLERFVGTVHDVLLEEKVEGEDLYIG 410

Query: 427 KLVGRSPWLQSV-VLNSKNHNIGDIIKVRIT 456
           ++  ++P +  + V+  ++   G ++K  IT
Sbjct: 411 RMYAQAPDVDGLTVVMGRDMVPGTMVKCGIT 441


>gi|332292576|ref|YP_004431185.1| MiaB-like tRNA modifying enzyme YliG [Krokinobacter diaphorus
           4H-3-7-5]
 gi|332170662|gb|AEE19917.1| MiaB-like tRNA modifying enzyme YliG [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 477

 Score =  162 bits (409), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 134/459 (29%), Positives = 223/459 (48%), Gaps = 55/459 (11%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD-----DADLIVLNTCHIREKAAEKVYSF 83
           V + GC  NVYDS  +       G  + N MD     + +++V+NTC   + A E+  + 
Sbjct: 40  VVTLGCSKNVYDSEVL------MGQLKANEMDVAHEEEGNIVVINTCGFIDNAKEESVNT 93

Query: 84  LGRIRNLKNSRIKEGGDL-LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
           +     L+  + KE G++  V V GC+++    ++ +  P V+   G      LP LL  
Sbjct: 94  I-----LEYVKQKEEGEVDKVFVTGCLSERYKPDLQKEIPDVDQYFGTT---ELPGLL-- 143

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
                + +  DY  E   ER++     Y       A+L I EGCD+ C+FC +P  RG  
Sbjct: 144 -----KALGADYKHELIGERITTTPKNY-------AYLKIAEGCDRPCSFCAIPLMRGKH 191

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGL- 260
            S+S+  +V EA+KL  NGV E+ L+ Q++  +   GLD  +K   ++LL +L +++G+ 
Sbjct: 192 KSKSIEHLVIEAKKLAANGVTELILIAQDLTYY---GLDLYKKRNLAELLENLVQVEGIE 248

Query: 261 -VRLRYT--TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
            +RL Y   +  P D+ D + +       +  Y+ +P+Q  +D ILKSM R  T  +   
Sbjct: 249 WIRLHYAFPSGFPVDVLDVMNREPK----VCNYIDIPLQHIADHILKSMRRGTTMEKTNA 304

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
           ++DR R   P + I +  IVG+PGET++DF+     V    + +   F YS    T   N
Sbjct: 305 LLDRFRESVPGMTIRTTLIVGYPGETEEDFQLMKQWVKDQRFERLGCFTYSHEENTHAFN 364

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SP 433
           + + V E VK +R   + +   +     N   +G+  ++++++  KE    +GR    SP
Sbjct: 365 LEDDVPEEVKMDRANQIMEIQSQISWELNQQKIGKEFKIVVDR--KEGNYFIGRTEFDSP 422

Query: 434 WLQSVVLNSKNH---NIGDIIKVRITDVKISTLYGELVV 469
            + + VL          GD   V IT+ +   LY E +V
Sbjct: 423 DVDNEVLVDATKFYLKTGDYAMVTITEAEDFDLYAEPLV 461


>gi|294101399|ref|YP_003553257.1| MiaB-like tRNA modifying enzyme YliG [Aminobacterium colombiense
           DSM 12261]
 gi|293616379|gb|ADE56533.1| MiaB-like tRNA modifying enzyme YliG [Aminobacterium colombiense
           DSM 12261]
          Length = 429

 Score =  162 bits (409), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 122/450 (27%), Positives = 205/450 (45%), Gaps = 31/450 (6%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
            ++ S GC  N  DS  +  M  + G+  V+S+D+A + ++NTC   + A E+    +  
Sbjct: 3   IYIISLGCAKNSVDSENLIGMLRAAGFRVVDSIDEAQVAIVNTCGFIQPAVEENVDII-- 60

Query: 87  IRNLKNSRIKEGGDLLVV-VAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
              L   R+KE G L  + V GC+    GEE+ +  P V++               +A  
Sbjct: 61  ---LDLERLKEEGRLQKIGVVGCLVNRYGEELKKELPSVDI-------------WSQAEE 104

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            + VV    +    ++R     G     R  + +L + EGCD FC++C +P  RG   S 
Sbjct: 105 WESVVRQLGAKPSNWQR-----GMLPGTRPWSRYLKVGEGCDSFCSYCTIPSIRGWARSY 159

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            +  +  EA +L++ G  EI L+GQ++  + G+ + G+    + L    + +   V LR 
Sbjct: 160 PIEVLTSEASRLVEEGAREICLVGQDLTVY-GRDVYGKPSLIALLDSLTASLPQEVWLRL 218

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
              HP  + +  I        ++PYL +P+Q     +L+ MNR+      R +   IR  
Sbjct: 219 LYLHPARVDERFIDYISSSKSVLPYLDIPIQHVEGDLLRRMNRKENEESLRTLFGYIRKK 278

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P  A+ + FIVGFPGET++ F   +D  + +   +  +F Y    GT  + +  Q+   
Sbjct: 279 NPLFALRTTFIVGFPGETEEQFEKVLDFAEDMEIDRVGAFAYCAEEGTIAATLPGQLSSK 338

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVV-- 439
           +K ER   L +   E  +      VG+ + VL+E    E     GRS    P +  +V  
Sbjct: 339 IKEERYNRLMELQSEISLRRQSLFVGRELTVLVETIDNEDNIAWGRSYRDAPEVDGLVGI 398

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELVV 469
           +   +   G  +KV+IT+ +   L G  VV
Sbjct: 399 MEGAHLKEGAFVKVKITEAEEYDLLGVEVV 428


>gi|198423331|ref|XP_002121617.1| PREDICTED: similar to CDK5 regulatory subunit associated protein
           1-like 1 [Ciona intestinalis]
          Length = 516

 Score =  162 bits (409), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 131/477 (27%), Positives = 224/477 (46%), Gaps = 42/477 (8%)

Query: 6   KLIGVAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVN-SMDDADL 64
           K++GV      I       Q  FVK++GC  N  DS  M     S GY  V  + D+ADL
Sbjct: 45  KVLGVELEDDTIQSNIPATQTIFVKTWGCTHNSSDSEYMAGQLASYGYNVVTENGDNADL 104

Query: 65  IVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIV 124
            +LN+C ++  A +   + + + ++L            VV+AGCV+Q       ++S I 
Sbjct: 105 WLLNSCTVKNPAEDHFRNMISKAQSLNKQ---------VVLAGCVSQGAP----KQSYIQ 151

Query: 125 NV-VVGPQTYYRLPELLERARFGKRVVDTDYSVED--KFERLSIVDGGYNRKRGVTAFLT 181
            + ++G Q   R+ E++E    G  V       E+  K    S+ D    R+      ++
Sbjct: 152 GLSIIGVQQIDRVVEVVEETLKGNTVRLLKQKKENGRKIGGASL-DLPKIRRNPFIEIIS 210

Query: 182 IQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD 241
           I  GC   CT+C   + RG   S  ++++V  A +    GV EI L  ++  A+ G+ + 
Sbjct: 211 INTGCLNSCTYCKTKHARGNLGSYPVAEIVQRAIQSFGEGVVEIWLTSEDTGAY-GRDIG 269

Query: 242 GEKCTFSDLLYSLSEI--------KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHL 293
               +  +LL+ L ++         G+    Y   H  +M   L   +     +  +LH+
Sbjct: 270 ---TSLPELLWELVKVIPVGCMLRVGMTNPPYILDHLEEMGKILNHPN-----VYSFLHV 321

Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
           PVQSGSD+ L  M R +TA ++  ++D +R+  P I+I++D I GFP ETD+DF  TM L
Sbjct: 322 PVQSGSDQTLHEMRREYTASDFELVVDTLRASVPGISIATDIICGFPTETDEDFEDTMTL 381

Query: 354 VDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFND--ACVG 411
            +K  +   F  ++ PR GTP + M +   + +K        K+L E   S+      +G
Sbjct: 382 CEKYKFPSLFINQFFPRPGTPAARMPQIHRQEIKKR-----TKRLSELFRSYEPYGHQLG 436

Query: 412 QIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           +I +VL+ +   ++   VG + + + V++       G + +V I +     L G+ +
Sbjct: 437 KIQKVLVTEIAHDQIHYVGHNKYYEQVLIPMDEDLTGKMFEVEIVETGKHFLKGKRI 493


>gi|296284753|ref|ZP_06862751.1| hypothetical protein CbatJ_14083 [Citromicrobium bathyomarinum
           JL354]
          Length = 391

 Score =  162 bits (409), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 122/431 (28%), Positives = 193/431 (44%), Gaps = 51/431 (11%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V S GC++N  +S R+  +  +Q           DL+V+N+C +  +A       + R R
Sbjct: 6   VISLGCRLNHAESERIAALVEAQ----------PDLVVVNSCSVTREAVRHTRQAIRRAR 55

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
               +         ++V GC A+ E E +     +   V              +A+   R
Sbjct: 56  KAHPA-------ARLLVTGCAAETEREALGAMDEVDGFVA------------NQAKLDAR 96

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
                ++V +   R+++      R++G  AF+ +Q GCD  CTFC +P  RG   S  ++
Sbjct: 97  ----SWNVPEP--RVAL------RQQGTRAFVGVQNGCDHACTFCSIPAGRGTSRSDEIA 144

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
            V+      +  G  E+ L G ++ +W G  L GE    + +   L+E   L RLR ++ 
Sbjct: 145 TVLRAVEARLIEGTQEVVLTGVDLTSW-GHDLPGEPRLGALVSAILNEFPQLPRLRLSSV 203

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
              ++ D L         +MP+LHL +Q GSD ILK M RRH   +   ++ R+++ RP+
Sbjct: 204 DGIEIDDALFDLIAGEPRVMPHLHLSLQHGSDLILKRMKRRHLRGDAVDLVARLKARRPE 263

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           IAI +D I GFP ETD      + ++ + G      F YSPR GTP + M  QVD     
Sbjct: 264 IAIGADLIAGFPTETDAHHADNLSIIAECGIVHGHIFPYSPRAGTPAARM-PQVDVATIK 322

Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL--NSKNHN 446
            R   L+  +R  +  +  + +GQ   VL EK G       G +P    V L   +    
Sbjct: 323 ARAAELRTAVRRTRDGWLASLIGQRHTVLAEKDGS------GYTPHFARVALPEGTAPGT 376

Query: 447 IGDIIKVRITD 457
           I  I   RI +
Sbjct: 377 IASITPTRIIE 387


>gi|307729597|ref|YP_003906821.1| MiaB-like tRNA modifying enzyme YliG [Burkholderia sp. CCGE1003]
 gi|307584132|gb|ADN57530.1| MiaB-like tRNA modifying enzyme YliG [Burkholderia sp. CCGE1003]
          Length = 463

 Score =  162 bits (409), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 130/466 (27%), Positives = 214/466 (45%), Gaps = 52/466 (11%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC   + DS ++     ++GYE   + + ADL+V+NTC   ++A ++    +G   N 
Sbjct: 21  SLGCPKALVDSEQIITQLRAEGYEISGTYNGADLVVVNTCGFIDEAVQESLDAIGEALN- 79

Query: 91  KNSRIKEGGDLLVVVAGCVA---QAEGEEILRR-SPIVNVVVGPQTYYRLPELLERARFG 146
           +N +        V+V GC+     A G  ++    P V  V GP   + L E+++     
Sbjct: 80  ENGK--------VIVTGCLGAKKSASGSGLIEEVHPKVLAVTGP---HALGEVMQH---- 124

Query: 147 KRVVDTDYS-VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
              V T      D F  L    G     R   A+L I EGC+  CTFC++P  RG  +SR
Sbjct: 125 ---VHTHLPKPHDPFVDLVPAAGVKLTPRHY-AYLKISEGCNHRCTFCIIPSMRGDLVSR 180

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYSL 254
            +++V+ EA  L  +GV E+ ++ Q+ +A           W GK L   K   +DL+ +L
Sbjct: 181 PVAEVMLEAENLFKSGVKELLVISQDTSAYGVDVKYRTGFWNGKPL---KTRMTDLVGAL 237

Query: 255 SEIKG----LVRLRYTTSHPR-DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
            E+       VRL Y   +P  D    ++ A      ++PYL +P Q     +LK M R 
Sbjct: 238 GELAAQYGAWVRLHYVYPYPSVDEVIPMMAAGPYKGHVLPYLDVPFQHAHPEVLKRMKRP 297

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369
             A +  + +   R + PD+ I S FI GFPGET++ F   +D + +    +   F YSP
Sbjct: 298 ANAEKVMERVKAWREMCPDLTIRSTFIAGFPGETEEQFETLLDFIREAELDRVGCFAYSP 357

Query: 370 RLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GK 427
             G   + +   + + V+ ER     +   +         VG+ ++VL+++   +   G+
Sbjct: 358 VEGASANELDGALPDEVREERRARFMEVAEQVSAKRIAKKVGKTLKVLVDETNADGGIGR 417

Query: 428 LVGRSPWLQSVVL------NSKNHNIGDIIKVRITDVKISTLYGEL 467
               +P +  VV        SK + +GD + V+IT      L+GE+
Sbjct: 418 TAADAPEIDGVVYIAPAAKASKRYKVGDFVSVKITGADGHDLWGEV 463


>gi|238027205|ref|YP_002911436.1| ribosomal protein S12 methylthiotransferase [Burkholderia glumae
           BGR1]
 gi|237876399|gb|ACR28732.1| 2-methylthioadenine synthetase [Burkholderia glumae BGR1]
          Length = 460

 Score =  162 bits (409), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 133/478 (27%), Positives = 216/478 (45%), Gaps = 66/478 (13%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R  + S GC   + DS ++     ++GYE   + D ADL+V+NTC   + A ++    +G
Sbjct: 10  RIGIVSLGCPKALVDSEQIITQLRAEGYEISGTYDGADLVVVNTCGFIDDAVQESLDAIG 69

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVA---QAEGEEILRR-SPIVNVVVGPQTYYRLPELLE 141
                    + E G   V+V GC+     A G  ++    P V  V GP   + L E+++
Sbjct: 70  EA-------LTENGK--VIVTGCLGAKKSASGAGLIEEVHPKVLAVTGP---HALGEVMQ 117

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
                  V        D F  L +   G        A+L I EGC+  CTFC++P  RG 
Sbjct: 118 A------VHSHLPKPHDPFVDL-VPAAGIKLTPRHYAYLKISEGCNHRCTFCIIPSMRGD 170

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDL 250
            ISR +++V+ EA  L  +GV E+ ++ Q+ +A           W G+ L   K   ++L
Sbjct: 171 LISRPVAEVMLEAENLFKSGVKELLVISQDTSAYGVDVKYRTGFWNGRPL---KTRMTEL 227

Query: 251 LYSLSEIKG----LVRLRYTTSHPRD------MSDCLIKAHGDLDVLMPYLHLPVQSGSD 300
           + +L E+       VRL Y   +P        M++   + H     ++PYL +P Q    
Sbjct: 228 VAALGELAAQYGAWVRLHYVYPYPHVDEIIPLMAEGAYRGH-----VLPYLDVPFQHADP 282

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVR---PDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
            +LK M R   A    +++DR+R  R   PD+ I S FI GFPGET+  F   +D + + 
Sbjct: 283 DVLKRMRRPANA---EKVLDRVRKWREVCPDLTIRSTFIAGFPGETEAQFETLLDFIREA 339

Query: 358 GYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVL 417
              +   F YSP  G   + +   + + V+  R     +   E   +  +  +GQ ++VL
Sbjct: 340 ELDRVGCFAYSPVEGATANELDGALPDEVREARRARFMEVAEEVSAARIERKIGQTLKVL 399

Query: 418 IEKHGKEK--GKLVGRSPWLQSVVL------NSKNHNIGDIIKVRITDVKISTLYGEL 467
           I++   E   G+    +P +  VV        +K + +GD + V IT      L+GE+
Sbjct: 400 IDEVNAEGGIGRTAADAPEIDGVVYVEPAPKGAKRYKVGDFVSVAITGADGHDLWGEV 457


>gi|94984483|ref|YP_603847.1| hypothetical protein Dgeo_0375 [Deinococcus geothermalis DSM 11300]
 gi|123079979|sp|Q1J1F6|RIMO_DEIGD RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|94554764|gb|ABF44678.1| SSU ribosomal protein S12P methylthiotransferase [Deinococcus
           geothermalis DSM 11300]
          Length = 485

 Score =  162 bits (409), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 136/486 (27%), Positives = 229/486 (47%), Gaps = 71/486 (14%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
            P+  F+ S GC   + DS R+     ++GYE   + +DA  +++NTC     A E+  S
Sbjct: 13  APKVGFI-SLGCPKALVDSERILTQLRAEGYEVAPNYEDAQAVIVNTCGFITPAVEESLS 71

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT------YYR- 135
            +G   +             V+V GC+ +   E+IL R P V  + G +       + R 
Sbjct: 72  AIGEALDATGK---------VIVTGCLGE-RPEKILERHPKVAAITGSEAVDDVMAHVRE 121

Query: 136 -LP-------ELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCD 187
            LP        LL  A  G R  DT          + +    Y       A++ I EGC+
Sbjct: 122 LLPIELDPFTGLLPVAAPGMRQGDT------LAPSVKLTPRHY-------AYVKIAEGCN 168

Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLD 241
             C+FC++P  RG ++SR    V+ EA +LI  G  E+ ++ Q+ +A+      R     
Sbjct: 169 HTCSFCIIPKLRGRQVSRDAGAVLYEAYRLIAGGTKELMIISQDTSAYGVDLRHRTSEFQ 228

Query: 242 GE--KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
           GE  +    DL   L E+   VR+ Y   +P       + + G    ++PYL +P+Q  S
Sbjct: 229 GEQVRAHLIDLAEKLGEMGAWVRMHYVYPYPHVERIVELMSQGK---ILPYLDVPLQHAS 285

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
             +LK M RR  A +    I R R + P++ I S FIVGFPGET++DF+  +D +++   
Sbjct: 286 PAVLKRM-RRPGAGKQLDTIRRWREICPELVIRSTFIVGFPGETEEDFQLLLDFLEEARL 344

Query: 360 AQAFSFKYSPRLGTPGSNMLEQVDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEV 416
            +  +F YS       + +   + E VK ERL   + + +++  ++++     VG++++V
Sbjct: 345 DRVGAFTYSDVEEADANALDGAIPEEVKQERLARFMEVAQRISREKLAEK---VGRVLDV 401

Query: 417 LIEKHGKEKG-----KLVGRS----PWLQSVVL-----NSKNHNIGDIIKVRITDVKIST 462
           +I++   ++G     +L+GR+    P +   V       +    IGDI++ RI D     
Sbjct: 402 IIDEFNDDEGDEPGTRLIGRTKGDAPGIDGQVYLYAGDFAGQVKIGDIVQARIEDSDEYD 461

Query: 463 LYGELV 468
           LYGE++
Sbjct: 462 LYGEVI 467


>gi|307297694|ref|ZP_07577500.1| MiaB-like tRNA modifying enzyme YliG [Thermotogales bacterium
           mesG1.Ag.4.2]
 gi|306916954|gb|EFN47336.1| MiaB-like tRNA modifying enzyme YliG [Thermotogales bacterium
           mesG1.Ag.4.2]
          Length = 434

 Score =  162 bits (409), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 123/447 (27%), Positives = 202/447 (45%), Gaps = 50/447 (11%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHI----REKAAEKVYSFL 84
           V S GC  N+ D      +  ++G+E V     ADLI+++TC      ++++ E+++ F+
Sbjct: 5   VLSLGCSKNIADMDNFMGIMANRGHEIVEDASVADLIIIDTCGFIDDAKKESVEEIFKFI 64

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
                   S  +E   L VV  GC+ Q   +E+      ++ ++G  + + L +L+E   
Sbjct: 65  --------SLKQENPGLKVVAVGCLVQRYFDELKSEISEIDGLIGVTSPFTLADLIENGE 116

Query: 145 F------------GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTF 192
           F              RVV + YS                      A++ I +GC++ C F
Sbjct: 117 FFYLKEPDGVYDFSSRVVSSKYS----------------------AYVKIGDGCNRNCAF 154

Query: 193 CVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLY 252
           C +P  +G  +SR+   +V E   LI  GV EI L+ Q+   + GK L+ EK     LL 
Sbjct: 155 CSIPNFKGKSVSRNPDSIVKETLSLIRKGVKEIDLVSQDCTQY-GKDLN-EKTDLKSLLE 212

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
            L+ I G   +R    HP  + + L+ +   L  ++ Y  +PVQSGS RILK M R   +
Sbjct: 213 RLNNIDGDFWIRVLYLHPDHVDNELVDSILSLSKVVDYFDIPVQSGSTRILKKMGRIKDS 272

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
              R+++  IR   P   + +  ++GFPGE++  F  T+D V  + + +   F YS   G
Sbjct: 273 DRLRELLFGIRQKAPHAILRTTLLIGFPGESEATFNETLDFVRSVKFDRLGGFVYSNEEG 332

Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVG 430
           T        +      E L  L ++             GQI+ VL+E+ G     G+   
Sbjct: 333 TQAFGQKRTIGRKAAKEMLNSLLEEQDTISAGRLSQFKGQIMTVLVEESGSSYSLGRAYN 392

Query: 431 RSPWLQSVVLNSKNHNIGDIIKVRITD 457
            +P +  VV+   ++  G  +K RITD
Sbjct: 393 SAPDVDGVVVLKGHNEDGVFVKARITD 419


>gi|316931775|ref|YP_004106757.1| MiaB-like tRNA modifying enzyme [Rhodopseudomonas palustris DX-1]
 gi|315599489|gb|ADU42024.1| MiaB-like tRNA modifying enzyme [Rhodopseudomonas palustris DX-1]
          Length = 423

 Score =  161 bits (408), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 137/450 (30%), Positives = 207/450 (46%), Gaps = 62/450 (13%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V ++GC++N ++S  +       G         AD IV+N+C +  +A  +      +IR
Sbjct: 5   VITFGCRLNAFESELIRREAEGAGL--------ADTIVVNSCAVTNEAVAQARQ---QIR 53

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
            LK +R     + L++V GC AQ E          V+ V+G     R           K 
Sbjct: 54  KLKRAR----PEALIIVTGCAAQTEPATFAAMQE-VDRVIGNDDKTRS----HAWHAAKG 104

Query: 149 VVDTDYSVE-DKFERLSIVD------------GGYNRKRGVT-AFLTIQEGCDKFCTFCV 194
            +D   S   D  +++++ D             GY  + G+   F+ +Q GCD  CTFC+
Sbjct: 105 ALDAGPSFGLDTEQKIAVADIMAVREMAPHLLDGY--QSGLPRVFVQVQNGCDHRCTFCI 162

Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL 254
           +PY RG   S  +  VV++ R+L + G  EI L G ++ ++ G  L G     + +   L
Sbjct: 163 IPYGRGNSRSVPVGAVVEQVRRLAERGHAEIVLTGVDLTSY-GADLPGTPKLGTLVKKVL 221

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
             +  L RLR ++    +    LI A      LMP+LHL +Q+G D ILK M RRH   +
Sbjct: 222 RHVPELQRLRISSIDQVEADRDLIDALATEPRLMPHLHLSLQAGDDLILKRMKRRHARAD 281

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
                   R +RPDIA+ +D I GFP ETD+ F+ ++DLV++ G      F YSPR GTP
Sbjct: 282 AIAFCAEARRLRPDIALGADLIAGFPTETDEMFQRSLDLVEECGLTFLHVFPYSPRPGTP 341

Query: 375 GSNMLEQVDENV--------KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG 426
            + M  Q+D  V        +A     LQ++L        DA  G    VLIE   +   
Sbjct: 342 AARM-PQLDGRVIRDRAARLRAAGEAALQRRL--------DAETGASRAVLIESPTQ--- 389

Query: 427 KLVGRSPWLQSVVLNSKNHNIGDIIKVRIT 456
              GR+     V ++      GD+  +RIT
Sbjct: 390 ---GRTEHFLPVAISGATP--GDVQSLRIT 414


>gi|237755825|ref|ZP_04584424.1| conserved hypothetical protein [Sulfurihydrogenibium yellowstonense
           SS-5]
 gi|237692013|gb|EEP61022.1| conserved hypothetical protein [Sulfurihydrogenibium yellowstonense
           SS-5]
          Length = 430

 Score =  161 bits (408), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 122/443 (27%), Positives = 216/443 (48%), Gaps = 48/443 (10%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ D+  +             + ++AD+I++NTC   E A E+    +     L
Sbjct: 10  SLGCPKNLVDTEVLIGKLNQGNISFTANPEEADVILINTCGFIEPAKEESIETI-----L 64

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL--LERARFGKR 148
           +  ++K+  +  ++V GC+ +   +E+ +  P V+  +  +   ++P L  ++     KR
Sbjct: 65  EAVKLKQNSNKKIIVTGCLVERYKQELEKEIPEVDYFIDLKNQSQIPVLFDIKPKENTKR 124

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           ++ T                        TA+L I EGCD  C+FC +P  RG   S+ + 
Sbjct: 125 IISTPKH---------------------TAYLKISEGCDHTCSFCAIPNIRGKHRSKPIE 163

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
            +V+EA+ L D GV E+ ++ Q+  ++ G  L G+   F +LL  L +I G+  +R    
Sbjct: 164 ALVEEAKYLADLGVKELNIVSQDT-SYYGYDLYGKPMLF-ELLRQLEKIDGIKWIRLYYL 221

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
           +P  + +   K   D + ++ Y+ +P+Q   D+ILK M R +   +  QI+D      PD
Sbjct: 222 YPSTVDEDFFKFIKDSEKILHYIEMPIQHSEDKILKDMMRGYRKKKLYQILDWKEKYTPD 281

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG-SNMLEQVDENVK 387
           +AI S  IVG+P ET++DF +  + + +  +     F YS   GTP      +++ +  K
Sbjct: 282 MAIRSSVIVGYPMETEEDFESLKNFLQEAQFDWLGVFVYSHEEGTPAYQKHKDKIPKKEK 341

Query: 388 AERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL-VGRSPWLQSV----- 438
             RL     LQ+ + EQ+   N + +G+ ++++I+   +E   L +GRS   +S      
Sbjct: 342 IRRLNEISALQEGITEQK---NKSLIGKELDIIIDGFSEEWETLPIGRS--YRSAFEIDG 396

Query: 439 ---VLNSKNHNIGDIIKVRITDV 458
              V  ++  N+GDIIKVRI D 
Sbjct: 397 IVYVETTEPVNVGDIIKVRIKDT 419


>gi|255561612|ref|XP_002521816.1| radical sam protein, putative [Ricinus communis]
 gi|223539029|gb|EEF40626.1| radical sam protein, putative [Ricinus communis]
          Length = 630

 Score =  161 bits (408), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 124/455 (27%), Positives = 217/455 (47%), Gaps = 42/455 (9%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           Q  ++K++GC  N  DS  M     S GY   +  +D DL ++NTC ++  +   + + +
Sbjct: 62  QTIYIKTFGCSHNQSDSEYMAGQLSSFGYALTDIPEDGDLWLINTCTVKSPSQSAMDTII 121

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            + ++ K           +VVAGCV Q  G   L+    V++V G Q   R+ E++E   
Sbjct: 122 AKGKSAKKP---------LVVAGCVPQ--GSRNLKELEGVSIV-GVQQIDRVVEVVEETL 169

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G  V           + L  +D    RK      L I  GC   CT+C   + RG   S
Sbjct: 170 KGHEVRLLTR------KTLPALDLPKVRKNKFVEILPINVGCLGACTYCKTKHARGHLGS 223

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAW-RGKGLDGEK---CTFSDLLYSLSEIK-- 258
            ++  +V   R ++ +GV EI L  ++  A+ R  G++  +      S+L    S +   
Sbjct: 224 YTIDSLVGRVRTVVGDGVKEIWLSSEDTGAYGRDIGVNLPRLLNAIVSELPADASTMLRI 283

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           G+    +   H +++++ L         +  +LH+PVQSGSD +L +MNR +T   +R +
Sbjct: 284 GMTNPPFILEHLKEIAEVLRHP-----CVYSFLHVPVQSGSDNVLNAMNREYTVSNFRTV 338

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           +D +  + P + I++D I GFPGETDDDF  T+ L+++    Q    ++ PR GTP + M
Sbjct: 339 VDTLTELVPGMQIATDIICGFPGETDDDFAQTVSLINEYKLPQVHISQFYPRPGTPAARM 398

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFN-----DACVGQIIEVLIEKHGKEKGKLVGRSP 433
            ++V  N+       ++K+ RE    F      +   G++  + I +   +   LVG + 
Sbjct: 399 -KKVPSNI-------VKKRSRELTAVFEAFTPYNGMEGRVERIWITEIATDGIHLVGHTK 450

Query: 434 WLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
               V++ +    +G    V+IT V   +++GE++
Sbjct: 451 GYVQVLVIAPETMLGTSAIVKITSVGRWSVFGEVI 485


>gi|192360739|ref|YP_001982368.1| MiaB-like tRNA modifying enzyme YliG [Cellvibrio japonicus Ueda107]
 gi|238065319|sp|B3PGP3|RIMO_CELJU RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|190686904|gb|ACE84582.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Cellvibrio
           japonicus Ueda107]
          Length = 451

 Score =  161 bits (408), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 130/456 (28%), Positives = 218/456 (47%), Gaps = 45/456 (9%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ DS R+      +GY  V S +DAD++++NTC   + A ++    +G   N 
Sbjct: 23  SLGCPKNLVDSERILTQLRMEGYNIVPSYNDADMVIVNTCGFIDSAVQESLGAIGEALN- 81

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
                 E G +LV   GC+  A+ +EI++  P V  + G   Y    E+L  A+  + + 
Sbjct: 82  ------ENGKVLV--TGCLG-AKKDEIIQVHPNVLGITGAHAYE---EVL--AQVHEHLP 127

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
            +     + F  L    G     R   A+L I EGC+  C+FC++P  RG  +SR + QV
Sbjct: 128 PS--QTHNPFTDLVPPQGIKLTPRHY-AYLKISEGCNHSCSFCIIPDMRGKLVSRPIGQV 184

Query: 211 VDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYSLSEIKG 259
           + EA +L+  GV E+ ++ Q+ +A           W G+ L   K     L  +L E+  
Sbjct: 185 MGEAERLVKAGVKELLVISQDTSAYGVDIKHRTDFWDGRPL---KTDMYQLAAALGELGV 241

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
            VRL Y   +P   +   + A G +   +PYL +P Q  S  +L+ M R     +  + I
Sbjct: 242 WVRLHYVYPYPHVDNVIPLMAQGKV---LPYLDIPFQHASPTLLRKMRRPGQVEKTLERI 298

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
              R   P++ + S FIVGFPGET+ DF   +  +++    +   F+YSP  G   + + 
Sbjct: 299 KNWREQVPNLTLRSTFIVGFPGETEADFEELLGFLEEAQLDRVGCFQYSPVEGAKANELP 358

Query: 380 EQVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPW 434
           + V + +K    +R + LQ+++  +++      VGQ + VLI++   E   G+    +P 
Sbjct: 359 DPVLDEIKQARYDRFMQLQQRISTERLKQK---VGQTLPVLIDEVDDEGAIGRSYADAPE 415

Query: 435 LQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468
           +   V  + +  +  GDI+ V+I       L+G  V
Sbjct: 416 IDGCVYLNGDIQVKPGDIVNVQIEHSDEYDLWGTRV 451


>gi|148360663|ref|YP_001251870.1| 2-methylthioadenine synthetase; MiaB [Legionella pneumophila str.
           Corby]
 gi|296106272|ref|YP_003617972.1| Fe-S oxidoreductase [Legionella pneumophila 2300/99 Alcoy]
 gi|238066350|sp|A5IGM4|RIMO_LEGPC RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|148282436|gb|ABQ56524.1| 2-methylthioadenine synthetase; MiaB [Legionella pneumophila str.
           Corby]
 gi|295648173|gb|ADG24020.1| Fe-S oxidoreductase [Legionella pneumophila 2300/99 Alcoy]
          Length = 439

 Score =  161 bits (408), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 133/461 (28%), Positives = 220/461 (47%), Gaps = 59/461 (12%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC   + DS R+     +QGYE V + +DA ++V+NTC   + A ++       +  +
Sbjct: 9   SLGCPKALVDSERIITQLKAQGYELVPTYEDAGVVVINTCGFIDSAVQE------SLDTI 62

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
           K +  + G    V+V GC+  A+ + I    P V  + G   Y             + VV
Sbjct: 63  KEAMAENGR---VIVTGCLG-AKADVIKNACPDVLHISGAHAY-------------EEVV 105

Query: 151 DTDY----SVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           +  +       D F +L I   G        A+L I EGC++ CTFC++P  RG   S  
Sbjct: 106 NAVHQHLPPPADPFTQL-IPPQGIKLTPRHYAYLKISEGCNQKCTFCIIPTMRGKLQSYP 164

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYSLS 255
           ++Q++ EA+KL   GV E+ ++ Q+ +A           W+GK ++     F DL   L 
Sbjct: 165 MAQILTEAKKLKQAGVKELLVISQDTSAYGVDTRYQQVEWQGKTVNTR---FYDLCEQLG 221

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
           E+   VRL Y   +P    D ++    D  +++PYL +P+Q  + RILK+M R  ++   
Sbjct: 222 ELGIWVRLHYVYPYPH--VDDIVPLMRD-GLILPYLDIPLQHANSRILKAMKRPASSENT 278

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
              I   R + PDI + S FIVGFPGET+++F   +  + +    +   FKYSP  G   
Sbjct: 279 LLRIASWREICPDITLRSTFIVGFPGETEEEFSELLAFLKEAQLDRVGCFKYSPVEGAKA 338

Query: 376 SNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS 432
           +++   V E++K E   R + +Q ++   ++      +G    VLI++  ++  +++ RS
Sbjct: 339 NDLDNPVSEDIKEERYHRFMQVQAEISRNKLKNK---IGSTQTVLIDEITED--QIIARS 393

Query: 433 ----PWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGEL 467
               P +  +V   K   I  G   +  ITD     LYG+L
Sbjct: 394 KSDAPEIDGLVYLPKISGITVGSFAEAMITDSDDYDLYGDL 434


>gi|288560943|ref|YP_003424429.1| MiaB-like tRNA modifying enzyme [Methanobrevibacter ruminantium M1]
 gi|288543653|gb|ADC47537.1| MiaB-like tRNA modifying enzyme [Methanobrevibacter ruminantium M1]
          Length = 428

 Score =  161 bits (408), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 129/450 (28%), Positives = 230/450 (51%), Gaps = 34/450 (7%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + F+++YGC  N  DS  M  +        V++ ++AD I++NTC+++     KV   + 
Sbjct: 5   KVFIETYGCTFNQADSEIMAGILNENNIGLVSTEEEADAIIVNTCYVKLPTESKV---IN 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           RI+NL+    K+  D  ++V GC+ + + +++    P  + + GP    +  ++++    
Sbjct: 62  RIKNLQ----KQYPDKKIIVGGCMVEVDPKKLEAIGPNCSWI-GPHQLNKTADVVKSTIG 116

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G+ V +  +S E K     I      RK      + I EGC   CT+C   + RG   S 
Sbjct: 117 GEIVREFGFSDEPKVCVPKI------RKDPYIHVIQICEGCLGACTYCCTRFARGHLNSY 170

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            +  +V+EAR  I++G  EI L  Q+ +A+ GK   GEK   SDL+  ++ + G  R+R 
Sbjct: 171 PIKDIVEEARLAIEDGCVEIELTAQDTSAF-GKDT-GEK--LSDLIKEVASLDGDFRVRV 226

Query: 266 TTSHPRDMS---DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
              HPR++    D LI+A   ++ +  ++HLP+QSGSD++L+ M R HT  +Y+ I+   
Sbjct: 227 GMMHPRNIGNDLDNLIEAF-KMEKVYDFIHLPIQSGSDKVLREMGRNHTVDDYKNIVYSF 285

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           +   PDI I++D I+G+P ET++DF  T +L+ +I +      KY  R G   S++    
Sbjct: 286 KQAIPDITIATDIIIGYPTETEEDFMKTAELIREIKFNLIHLSKYQHREGAISSSL---- 341

Query: 383 DENVKAERLLCLQKKLREQQVSF----NDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSV 438
            +N+  + +    K L E +       N     + ++ L+ + G + G +   + ++  V
Sbjct: 342 -DNIPFDDMKRRSKYLSEIKFEMLEEENKFLQDREMDALVVEKGSKGGFIAKTNSYIPVV 400

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           V   ++ N+G+ IKV I     + L G  +
Sbjct: 401 V---QDVNLGEFIKVHIDKTTGTYLIGHKI 427


>gi|312888457|ref|ZP_07748031.1| SSU ribosomal protein S12P methylthiotransferase [Mucilaginibacter
           paludis DSM 18603]
 gi|311299085|gb|EFQ76180.1| SSU ribosomal protein S12P methylthiotransferase [Mucilaginibacter
           paludis DSM 18603]
          Length = 444

 Score =  161 bits (408), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 130/456 (28%), Positives = 219/456 (48%), Gaps = 41/456 (8%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNS---MDDADLIVLNTCHIREKAAEKVYS 82
           R  V + GC  N YDS  +        ++ V+    +   D+IV+NTC   + A ++   
Sbjct: 16  RVNVVTLGCSKNTYDSEILMGQLRGNSFDVVHESGELASDDIIVINTCGFIDNAKQESID 75

Query: 83  FLGRIRNLKNSRIKEGGDL-LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
            +     L+ S +KE G +  V+V GC+++    E+      V+   G      L  LL+
Sbjct: 76  TI-----LQYSELKEQGKVGKVIVTGCLSERYKPELEAEITNVDAYFGTND---LQNLLQ 127

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
                   V  +Y  E   ERL      +       A+  I EGC++ C+FC +P  RG 
Sbjct: 128 S-------VGANYKYELLGERLLTTPSHF-------AYFKISEGCNRPCSFCAIPLMRGK 173

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
            +S  + Q+V +A  L  NG  E+ ++ Q++  + G  L G++    +LL  LS++ G+ 
Sbjct: 174 HLSTPMEQLVKDAENLARNGTKELVVIAQDL-TYYGLDLYGKR-NLDELLRRLSDVNGIE 231

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
            +R   ++P      ++    +   +  Y+ +P+Q  SD +LKSM R  T  +   I++ 
Sbjct: 232 WIRLQYAYPSGFPMEVLDVMNERSNICNYMDMPLQHISDNMLKSMRRGITKQKTIDIVNA 291

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           IR   PDIA  +  I G+PGET  DF   MD V++  + +   F YS    T    +++ 
Sbjct: 292 IRDKVPDIAFRTTLITGYPGETQQDFEEMMDWVEETRFDRLGCFTYSHEEKTHAHQLVDD 351

Query: 382 VDENVKAERLLCLQKKLREQQVSF--NDACVGQIIEVLIEKHGKEKGKLVGR----SPWL 435
           V + VK ER   + +   +Q +SF  N   +G   +VLI+K  KE    VGR    SP +
Sbjct: 352 VPDEVKQERADAIMEI--QQGISFDKNQERIGHTYKVLIDK--KEGDYFVGRTEFDSPEV 407

Query: 436 QS-VVLNSKNH--NIGDIIKVRITDVKISTLYGELV 468
            + V++++  H   +G  + V+I + +   LYG++V
Sbjct: 408 DNEVLIDASKHYATVGSFVNVKIDNAEDFDLYGQIV 443


>gi|189425283|ref|YP_001952460.1| MiaB-like tRNA modifying enzyme [Geobacter lovleyi SZ]
 gi|189421542|gb|ACD95940.1| MiaB-like tRNA modifying enzyme [Geobacter lovleyi SZ]
          Length = 442

 Score =  161 bits (408), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 117/449 (26%), Positives = 213/449 (47%), Gaps = 24/449 (5%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA-AEKVYSF 83
           +RF V + GC++N +++  M +   + G+++V   + ADL ++N+C +  ++ AE     
Sbjct: 10  KRFAVATLGCKVNQFETADMIEQMQTAGWQQVKFSEVADLYLINSCTVTARSDAESRRLI 69

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPI-VNVVVGPQTYYRLPELLER 142
               R   +++I        V  GC AQ    ++L    +  ++V+G Q  + L + +++
Sbjct: 70  RRARRTNPHAKI--------VATGCYAQVAPADLLNLPDLQPDLVLGNQEKHDLVQHIKQ 121

Query: 143 ARFGKRVVD-TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
            R   ++ D T           S  +  + R     AFL IQ GC+  C++C+VP  RG 
Sbjct: 122 GR--HQITDLTSLKASGPLRLTSFAE--HTR-----AFLQIQNGCETGCSYCIVPIARGP 172

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGL 260
             S    +V++   +L+ +G  E+ L G ++ A+   GLD     + + L+  L +   +
Sbjct: 173 SRSVPPPEVLEAVSRLVASGYQEVVLTGIHMGAY---GLDLSPPGSLTALVQQLEDQNVV 229

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            RLR  +  P +++D L+        L  +LH+P+QSGSD +L+ M R +    Y   I 
Sbjct: 230 PRLRLGSIEPNELTDELLTLFKKSSRLCHHLHIPLQSGSDSVLQRMGRGYNTSFYANRIV 289

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
               + PD  I++D I GFPGET+ +F  T + V  +  A    F YS R GT  + M  
Sbjct: 290 TAAQLLPDAFIAADLIAGFPGETEQEFSETCNFVTSLPLADLHVFPYSTRPGTKAAAMSG 349

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440
            +   +  ER   L+    +++ +F    +G ++++L +++  + G L G S     V  
Sbjct: 350 HLKPAIIKERAEHLRGIAADKRAAFQHRFIGSVLQILGQRYSVKTGVLTGLSRNYLEVSY 409

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELVV 469
                 +   + V I  ++   L G L+ 
Sbjct: 410 QGSTQLLNQEVMVEIQALQNGLLTGRLIT 438


>gi|119505065|ref|ZP_01627141.1| hypothetical protein MGP2080_15289 [marine gamma proteobacterium
           HTCC2080]
 gi|119459047|gb|EAW40146.1| hypothetical protein MGP2080_15289 [marine gamma proteobacterium
           HTCC2080]
          Length = 440

 Score =  161 bits (408), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 126/424 (29%), Positives = 196/424 (46%), Gaps = 43/424 (10%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA-AEKVYS 82
           P++    S GC   + DS R+     S GYE   + +DA ++++NTC   + A AE + +
Sbjct: 5   PEKVGFISLGCPKALVDSERILTQLRSDGYEVTPNYEDAGVVIVNTCGFIDSAKAESLEA 64

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAE-GEEILRRSPIVNVVVGPQTYYRLPELLE 141
                    +  ++E G +LV   GC+ + +    I    P +  + GP  Y  +   + 
Sbjct: 65  I--------SEAVQENGRVLVT--GCMGKGDDARRIQDLHPNILGISGPAAYEEVVGAVH 114

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
                 R  D          R  I   G        A+L I EGC+  C FC++P  RG 
Sbjct: 115 EVIPMTRQPDP--------LRDLIPAQGVKLTPRHYAYLKISEGCNHRCKFCIIPSMRGD 166

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDL 250
            +SR +  ++ EA  L+  GV E+ ++ Q+ +A           W G+ L  +  T +  
Sbjct: 167 LVSRPIGDIMREAEALVRAGVRELLVISQDTSAYGVDLKYRTDFWEGRPLKSDLLTLAK- 225

Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
             +L E    VRL Y   +P    D LI    +  +L PYL +P+Q GS  +L+ M R  
Sbjct: 226 --TLGEFGIWVRLHYVYPYPN--VDALIPLMAEKKIL-PYLDVPLQHGSPSVLQRMKRPA 280

Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370
            A +  + I R R + PDI + S FIVG+PGET+ +F+  +D +D+    +A  F+YSP 
Sbjct: 281 AAEKTLERIKRWRDICPDITLRSTFIVGYPGETEAEFQELLDFIDEAQIDRAGCFQYSPV 340

Query: 371 LGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDAC--VGQIIEVLIEKHGKEKGKL 428
            G   + +   V E VK ER        R+Q +S N     VG    VLI++   E  + 
Sbjct: 341 KGATANELPNHVSETVKQERWDAFMA--RQQTISANKLAKKVGTTQAVLIDE--VEGDRA 396

Query: 429 VGRS 432
           +GRS
Sbjct: 397 IGRS 400


>gi|160933141|ref|ZP_02080530.1| hypothetical protein CLOLEP_01984 [Clostridium leptum DSM 753]
 gi|156868215|gb|EDO61587.1| hypothetical protein CLOLEP_01984 [Clostridium leptum DSM 753]
          Length = 424

 Score =  161 bits (408), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 124/430 (28%), Positives = 207/430 (48%), Gaps = 26/430 (6%)

Query: 51  QGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVA 110
           +G++ V+ +   D  ++NTC   E A ++    +  +  LK    +EG    +VV GC+A
Sbjct: 9   EGFQLVDDVAMGDAAIVNTCGFIESAKQESIEEILELAKLK----EEGRIKAIVVTGCLA 64

Query: 111 QAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGY 170
           +   +EI +  P VN VVG      +  ++  A  GKR+       E   E   +     
Sbjct: 65  ERYQQEIAKELPEVNAVVGIGANKEIARIVREALEGKRIETFPPKCELPLEGERV----- 119

Query: 171 NRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQ 230
                  ++L I EGCD  CT+C +P  RG   SR +  ++ EA KL   GV E+ ++ Q
Sbjct: 120 QSTPSYFSYLKIAEGCDNHCTYCAIPLIRGGYRSRKMEDILAEAEKLAQWGVKELMVIAQ 179

Query: 231 NVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY 290
           +   + G+ L GE      LL  L +++GL  +R    +P  ++D L++     D ++ Y
Sbjct: 180 DTTRY-GEDLYGEG-KLPQLLTELCKVEGLRWIRVLYCYPERITDELLEVMAKEDKILKY 237

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
           + LP+Q  S ++L++MNR+        +I +IR   P I + + F+VGFPGET++ F   
Sbjct: 238 MDLPLQHCSRQVLRAMNRQGDRESLSALIRKIREKVPGIVLRTTFMVGFPGETEEAFEEL 297

Query: 351 MDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFND--- 407
            +   ++ + +   F YS   GTP + + +Q+   +K  R    Q+ + EQQ++  D   
Sbjct: 298 AEFAKEMRFERMGCFAYSQEEGTPAARLPDQISREIKEHR----QELMMEQQMALMDEMS 353

Query: 408 -ACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVV---LNSKNHNIGDIIKVRITDVK 459
              VG+ I VL E   +      GRS    P + + V   +  K    G  ++V ITD  
Sbjct: 354 REMVGKTITVLNEGWDRYAECCFGRSAADAPEIDTKVFFTVEGKKPYPGMFVQVEITDTM 413

Query: 460 ISTLYGELVV 469
              L G++V 
Sbjct: 414 DCDLIGQVVT 423


>gi|54293668|ref|YP_126083.1| hypothetical protein lpl0721 [Legionella pneumophila str. Lens]
 gi|81369118|sp|Q5WYL5|RIMO_LEGPL RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|53753500|emb|CAH14955.1| hypothetical protein lpl0721 [Legionella pneumophila str. Lens]
          Length = 435

 Score =  161 bits (408), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 132/458 (28%), Positives = 218/458 (47%), Gaps = 51/458 (11%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC   + DS R+     +QGYE V + +DA ++V+NTC   + A ++       +  +
Sbjct: 9   SLGCPKALVDSERIITQLKAQGYELVPTYEDAGVVVINTCGFIDSAVQE------SLDTI 62

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
           K +  + G    V+V GC+  A+ + I    P V  + G   Y  +   + +        
Sbjct: 63  KEAMAENGR---VIVTGCLG-AKADVIKNACPDVLHISGAHAYEEVVNAVHQHLPPP--- 115

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
                  D F +L I   G        A+L I EGC++ CTFC++P  RG   S  ++Q+
Sbjct: 116 ------ADPFTQL-IPPQGIKLTPRHYAYLKISEGCNQKCTFCIIPTMRGKLQSYPMAQI 168

Query: 211 VDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYSLSEIKG 259
           + EA+KL   GV E+ ++ Q+ +A           W+GK ++     F DL   L E+  
Sbjct: 169 LTEAKKLKQAGVKELLVISQDTSAYGVDTRYQQVEWQGKTVNTR---FYDLCEQLGELGI 225

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
            VRL Y   +P    D ++    D  +++PYL +P+Q  + RILK+M R  ++      I
Sbjct: 226 WVRLHYVYPYPH--VDDIVPLMRD-GLILPYLDIPLQHANSRILKAMKRPASSENTLLRI 282

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
              R + PDI + S FIVGFPGET+++F   +  + +    +   FKYSP  G   +++ 
Sbjct: 283 ASWREICPDITLRSTFIVGFPGETEEEFSELLAFLKEAQLDRVGCFKYSPVEGAKANDLD 342

Query: 380 EQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS---- 432
             V E++K E   R + +Q ++   ++      +G    VLI++  ++  +++ RS    
Sbjct: 343 NPVSEDIKEERYHRFMQVQAEISRNKLKNK---IGSTQTVLIDEITED--QIIARSKSDA 397

Query: 433 PWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468
           P +  +V   K   I  G   +V ITD     LY  LV
Sbjct: 398 PEIDGLVYLPKISGITVGSFAEVVITDSDDYDLYASLV 435


>gi|270308233|ref|YP_003330291.1| tRNA modification enzyme, MiaB family [Dehalococcoides sp. VS]
 gi|270154125|gb|ACZ61963.1| tRNA modification enzyme, MiaB family [Dehalococcoides sp. VS]
          Length = 416

 Score =  161 bits (408), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 115/406 (28%), Positives = 198/406 (48%), Gaps = 35/406 (8%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           + + GC++N  ++  +   F   GY  V+  D+ D+ +LNTC +   A  K   +  RI 
Sbjct: 6   LDTLGCKLNQAETEAIGREFAEAGYRLVSPQDNWDIYILNTCTVTHVADRKA-RYQVRIA 64

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
              N       +  + + GC A+  G+ I    P  N+++  +   R  +++       R
Sbjct: 65  RRHNP------NGFICLTGCYAENGGDGIT--CPDANLILDNE---RKADIVAEI---VR 110

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           +   + S +  +E        + R R   +F+ IQ+GCD FC++C+VP+ R  +  R + 
Sbjct: 111 LFPLEVSAKALYE--------HGRTR---SFIKIQDGCDNFCSYCIVPFVRRNKSCREVG 159

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
           +++ E       G  EI L G  +  +   G +      + L+ S+ E   + RLR ++ 
Sbjct: 160 EIISEINLRQAEGYQEIVLTGTEIGEYTSGGFN-----LAGLIKSILEFTFIPRLRLSSL 214

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
            P +++  L+    +   L  + H+ +QSGSDRIL  M R +   +Y   ++ IR+  PD
Sbjct: 215 QPNEITPQLLALWQN-PRLCNHFHIALQSGSDRILSFMQRPYALTDYTCTLESIRACLPD 273

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
            A+++D IVGFPGETD+DF  ++  V+K G+A+   F YS R GT  S M  ++D  V  
Sbjct: 274 TAVTTDVIVGFPGETDEDFLLSLRYVEKAGFARVHPFPYSERPGTFASAMSGKLDPAVIK 333

Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL-VGRSP 433
            RLL +    +   + +    +G   +VL E   K +G L  G +P
Sbjct: 334 TRLLQMMFAAKNASLQYRRQKIGMERDVLWEN--KTRGGLWFGYTP 377


>gi|120603130|ref|YP_967530.1| RNA modification protein [Desulfovibrio vulgaris DP4]
 gi|120563359|gb|ABM29103.1| RNA modification enzyme, MiaB family [Desulfovibrio vulgaris DP4]
          Length = 458

 Score =  161 bits (408), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 119/430 (27%), Positives = 196/430 (45%), Gaps = 49/430 (11%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           F   ++GC++N Y++  + + +  +G+  V++ + AD+I++NTC +  +A   V   + R
Sbjct: 8   FHAATFGCKVNQYETQSLREAWLRRGFTEVDTPEGADVILVNTCAVTARAVSDVRRAIAR 67

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVV----------VGPQTYYRL 136
           +     +         +VV GC AQ   EE      +V VV            P      
Sbjct: 68  LHRAAPA-------AGIVVTGCAAQVLREEFAGLPGVVAVVPQEAKATLAAYDPAAAIMP 120

Query: 137 PELLERARFGKR-----------VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEG 185
           P     A                VV    SV   F R+     G+ R R V   + +Q+G
Sbjct: 121 PVSTHDAHCDAATAQASSATSGDVVPAQASVFPDF-RIE----GFRRARPV---VKVQDG 172

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C   CT+C+VP TRG   SR   +VV E R+L+D G  E+ L G N+  + G+ L G   
Sbjct: 173 CSHRCTYCIVPLTRGASRSREPGEVVAELRRLLDAGFREVMLSGVNLRLY-GRDLSGAG- 230

Query: 246 TFSDLLYSL-----SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300
            F DLL  +      E  G  RLR ++  P  +    +   G   ++ P LHL +QSGS 
Sbjct: 231 DFWDLLQRVERELAPEWAGRARLRISSLEPGQLGAHALDVLGGSRLVCPQLHLSLQSGSP 290

Query: 301 RILKSMNRRHTAYEYRQIIDRIR---SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
            +L+ M R H  Y    ++D +R      P   + +D ++GFPGE++D F  T+D    +
Sbjct: 291 DVLRRMGRGH--YSPAPLLDFLRDLGGTWPVFGLGADILMGFPGESEDAFAETLDFARAL 348

Query: 358 GYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVG-QIIEV 416
               A  F YS R GT  +++ E + + ++  R   ++  + +++  F +   G   + V
Sbjct: 349 PLTYAHVFPYSRRPGTVAASLPEHLPQEIRKARAAAVRDVVAQKRAVFAERLAGLPALSV 408

Query: 417 LIEKHGKEKG 426
           +++  G  KG
Sbjct: 409 VLDGAGARKG 418


>gi|54296709|ref|YP_123078.1| ribosomal protein S12 methylthiotransferase [Legionella pneumophila
           str. Paris]
 gi|81371029|sp|Q5X765|RIMO_LEGPA RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|53750494|emb|CAH11888.1| hypothetical protein lpp0740 [Legionella pneumophila str. Paris]
          Length = 439

 Score =  161 bits (408), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 133/461 (28%), Positives = 220/461 (47%), Gaps = 59/461 (12%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC   + DS R+     +QGYE V + +DA ++V+NTC   + A ++       +  +
Sbjct: 9   SLGCPKALVDSERIITQLKAQGYELVPTYEDAGVVVINTCGFIDSAVQE------SLDTI 62

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
           K +  + G    V+V GC+  A+ + I    P V  + G   Y             + VV
Sbjct: 63  KEAMAENGR---VIVTGCLG-AKADVIKNACPDVLHISGAHAY-------------EEVV 105

Query: 151 DTDY----SVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           +  +       D F +L I   G        A+L I EGC++ CTFC++P  RG   S  
Sbjct: 106 NAVHQHLPPPADPFTQL-IPPQGIKLTPRHYAYLKISEGCNQKCTFCIIPTMRGKLQSYP 164

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYSLS 255
           ++Q++ EA+KL   GV E+ ++ Q+ +A           W+GK ++     F DL   L 
Sbjct: 165 MAQILTEAKKLKQAGVKELLVISQDTSAYGVDTRYQQIEWQGKTVNTR---FYDLCEQLG 221

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
           E+   VRL Y   +P    D ++    D  +++PYL +P+Q  + RILK+M R  ++   
Sbjct: 222 ELGIWVRLHYVYPYPH--VDDIVPLMRD-GLILPYLDIPLQHANSRILKAMKRPASSENT 278

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
              I   R + PDI + S FIVGFPGET+++F   +  + +    +   FKYSP  G   
Sbjct: 279 LLRIASWREICPDITLRSTFIVGFPGETEEEFSELLAFLKEAQLDRVGCFKYSPVEGAKA 338

Query: 376 SNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS 432
           +++   V E++K E   R + +Q ++   ++      +G    VLI++  ++  +++ RS
Sbjct: 339 NDLDNPVSEDIKEERYHRFMQVQAEISRNKLKNK---IGSTQTVLIDEITED--QIIARS 393

Query: 433 ----PWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGEL 467
               P +  +V   K   I  G   +  ITD     LYG+L
Sbjct: 394 KSDAPEIDGLVYLPKISGITVGSFAEAMITDSDDYDLYGDL 434


>gi|260587677|ref|ZP_05853590.1| tRNA-I(6)A37 modification enzyme MiaB [Blautia hansenii DSM 20583]
 gi|260541942|gb|EEX22511.1| tRNA-I(6)A37 modification enzyme MiaB [Blautia hansenii DSM 20583]
          Length = 312

 Score =  161 bits (408), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 97/259 (37%), Positives = 149/259 (57%), Gaps = 23/259 (8%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           + ++GCQMN  DS ++  +    GY  V   ++AD ++ NTC +RE A  +VY  LG + 
Sbjct: 62  ITTFGCQMNARDSEKLVGILERIGYVEVPD-ENADFVIYNTCTVRENANLRVYGRLGYLH 120

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           +LK    K+   +++ + GC+ Q     E++ +    VN++ G    Y+  EL+  +   
Sbjct: 121 SLK----KKNPHMMIGLCGCMMQEPQVVEKLKKSYSFVNLIFGTHNIYKFAELVVSSLLS 176

Query: 147 KRVV-----DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
            R++     DTD  VED       V+  Y  K GV     I  GC+ FC++C+VPY RG 
Sbjct: 177 DRMIIDIWKDTDKIVED-----LPVERKYPFKSGVN----IMFGCNNFCSYCIVPYVRGR 227

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR+   +V E  +L+ +GV E+ LLGQNVN++ GK LD E  TF+ LL  + +I+GL 
Sbjct: 228 ERSRNPKDIVREIERLVKDGVVEVMLLGQNVNSY-GKNLD-EPMTFAQLLTEIEKIEGLK 285

Query: 262 RLRYTTSHPRDMSDCLIKA 280
           R+R+ TSHP+D+SD LI+ 
Sbjct: 286 RIRFMTSHPKDLSDELIEV 304


>gi|303230864|ref|ZP_07317611.1| ribosomal protein S12 methylthiotransferase RimO [Veillonella
           atypica ACS-049-V-Sch6]
 gi|302514624|gb|EFL56619.1| ribosomal protein S12 methylthiotransferase RimO [Veillonella
           atypica ACS-049-V-Sch6]
          Length = 448

 Score =  161 bits (408), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 119/414 (28%), Positives = 209/414 (50%), Gaps = 24/414 (5%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ D+  M  +    GY   +++ +ADLI++NTC   EKA E+  + +     L
Sbjct: 9   SLGCAKNLVDTEVMLGLLKDDGYTITDNLHEADLIIINTCTFIEKAKEESINTI-----L 63

Query: 91  KNSRIKEGGDLL-VVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149
           + ++ KE G    ++VAGC++Q   +E+    P ++ ++G   + ++   ++    G R 
Sbjct: 64  EAAQYKETGRCKGLIVAGCLSQQYQDELFTEIPEIDALIGTGAWDQVMVAVDAIEHGNRS 123

Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209
              +       ER+  +          +A++ I EGC+  CTFC++P  RG   SRS+  
Sbjct: 124 CIMENITNIYDERMPRI----QTTPRYSAYVKIAEGCNNGCTFCIIPKVRGAFRSRSIES 179

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSH 269
           +  E  +L  +GV EI L+ Q+  ++ G  L+  K   ++LL  L++++G+  +R    +
Sbjct: 180 IKAEVERLATSGVKEIVLIAQDTTSY-GIDLNNGKPLLTELLKELTKVEGIEWIRMLYLY 238

Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329
           P   SD L+    +   L  Y+ +P+Q  ++ ILK MNRR +  +  +++ +IR+    +
Sbjct: 239 PTFFSDELLDIIVNEPKLCKYVDIPLQHVNNDILKQMNRRDSREDIERLLKKIRNAPTHV 298

Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAE 389
            + +  IVGFPGETD+ F+   + V  I +     F YS   GT      +QV E+VK E
Sbjct: 299 TLRTSIIVGFPGETDEQFQELCEFVKDIKFDNMGVFTYSQEEGTIAGAREDQVPEDVKEE 358

Query: 390 R---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-------EKGKLVGRSP 433
           R   L+ +Q  + E+    N    G I   +IE+  +        KG+L  ++P
Sbjct: 359 RYHTLMSIQAAISEEN---NRDLEGTIDYAMIEELEEGDNDTVLAKGRLKSQAP 409


>gi|170692354|ref|ZP_02883517.1| MiaB-like tRNA modifying enzyme YliG [Burkholderia graminis C4D1M]
 gi|170142784|gb|EDT10949.1| MiaB-like tRNA modifying enzyme YliG [Burkholderia graminis C4D1M]
          Length = 463

 Score =  161 bits (408), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 127/470 (27%), Positives = 213/470 (45%), Gaps = 60/470 (12%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC   + DS ++     ++GYE   + D ADL+V+NTC   ++A ++    +G   N 
Sbjct: 21  SLGCPKALVDSEQIITQLRAEGYEISGTYDGADLVVVNTCGFIDEAVQESLDAIGEALN- 79

Query: 91  KNSRIKEGGDLLVVVAGCVA---QAEGEEILRR-SPIVNVVVGPQTYYRLPELLERARFG 146
           +N +        V+V GC+     A G  ++    P V  V GP   + + E+++     
Sbjct: 80  ENGK--------VIVTGCLGAKKSASGSGLIEEVHPKVLAVTGP---HAVGEVMQHVHMH 128

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
                      D F  L +   G        A+L I EGC+  CTFC++P  RG  +SR 
Sbjct: 129 LP------KPHDPFVDL-VPPAGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGDLVSRP 181

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYSLS 255
           +++V+ EA  L  +GV E+ ++ Q+ +A           W GK +   K   +DL+ +L 
Sbjct: 182 VAEVMLEAENLFKSGVKELLVISQDTSAYGVDVKYRTGFWNGKPI---KTRMTDLVGALG 238

Query: 256 EIKG----LVRLRYTTSHPR------DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
           E+       VRL Y   +P        M+    K H     ++PYL +P Q     +LK 
Sbjct: 239 ELAAQYGAWVRLHYVYPYPSVDEVIPMMATGPYKGH-----VLPYLDVPFQHAHPEVLKR 293

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           M R   A +  + +   R + PD+ I S FI GFPGET++ F+  +D + +    +   F
Sbjct: 294 MKRPANAEKVMERVKAWREMCPDLTIRSTFIAGFPGETEEQFQTLLDFIREAELDRVGCF 353

Query: 366 KYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK 425
            YSP  G   + +   + + V+ ER     +   +         VG+ ++VL+++   + 
Sbjct: 354 AYSPVEGATANELDGALPDEVREERRARFMEVAEQVSAKRIAKKVGKTLKVLVDEINADG 413

Query: 426 --GKLVGRSPWLQSVVL------NSKNHNIGDIIKVRITDVKISTLYGEL 467
             G+    +P +  VV        SK + +GD + V+IT      L+GE+
Sbjct: 414 GIGRTAADAPEIDGVVYIAPAAKASKRYKVGDFVSVKITGADGHDLWGEV 463


>gi|307609481|emb|CBW98976.1| hypothetical protein LPW_07611 [Legionella pneumophila 130b]
          Length = 435

 Score =  161 bits (408), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 132/458 (28%), Positives = 218/458 (47%), Gaps = 51/458 (11%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC   + DS R+     +QGYE V + +DA ++V+NTC   + A ++       +  +
Sbjct: 9   SLGCPKALVDSERIITQLKAQGYELVPTYEDAGVVVINTCGFIDSAVQE------SLDTI 62

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
           K +  + G    V+V GC+  A+ + I    P V  + G   Y  +   + +        
Sbjct: 63  KEAMAENGR---VIVTGCLG-AKADVIKNACPDVLHISGAHAYEEVVNAVHQHLPPP--- 115

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
                  D F +L I   G        A+L I EGC++ CTFC++P  RG   S  ++Q+
Sbjct: 116 ------ADPFTQL-IPPQGIKLTPRHYAYLKISEGCNQKCTFCIIPTMRGKLQSYPMAQI 168

Query: 211 VDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYSLSEIKG 259
           + EA+KL   GV E+ ++ Q+ +A           W+GK ++     F DL   L E+  
Sbjct: 169 LTEAKKLKQAGVKELLVISQDTSAYGVDTRYQPVEWQGKTVNTR---FYDLCEQLGELGI 225

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
            VRL Y   +P    D ++    D  +++PYL +P+Q  + RILK+M R  ++      I
Sbjct: 226 WVRLHYVYPYPH--VDDIVPLMRD-GLILPYLDIPLQHANSRILKAMKRPASSENTLLRI 282

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
              R + PDI + S FIVGFPGET+++F   +  + +    +   FKYSP  G   +++ 
Sbjct: 283 ASWREICPDITLRSTFIVGFPGETEEEFSELLAFLKEAQLDRVGCFKYSPVEGAKANDLD 342

Query: 380 EQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS---- 432
             V E++K E   R + +Q ++   ++      +G    VLI++  ++  +++ RS    
Sbjct: 343 NPVSEDIKEERYHRFMQVQAEISRNKLKNK---IGSTQTVLIDEITED--QIIARSKSDA 397

Query: 433 PWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468
           P +  +V   K   I  G   +V ITD     LY  LV
Sbjct: 398 PEIDGLVYLPKISGITVGSFAEVVITDSDDYDLYASLV 435


>gi|266623033|ref|ZP_06115968.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Clostridium hathewayi DSM
           13479]
 gi|288865205|gb|EFC97503.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Clostridium hathewayi DSM
           13479]
          Length = 234

 Score =  161 bits (408), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 92/227 (40%), Positives = 138/227 (60%), Gaps = 8/227 (3%)

Query: 237 GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQ 296
           GK L+ E  TF+ LL  +  I GL R+R+ TSHP+D+SD LI+   + D +  +LHLP+Q
Sbjct: 3   GKNLE-EPMTFAKLLQEVEAIDGLRRIRFMTSHPKDLSDELIEVMKNSDKICHHLHLPLQ 61

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
           SGS RILK+MNRR+T  +Y +++++IR+  PDI++++D IVGFPGET++DF  TMD+V +
Sbjct: 62  SGSSRILKAMNRRYTKEQYLELVEKIRAAVPDISLTTDIIVGFPGETEEDFSETMDVVRR 121

Query: 357 IGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDAC---VGQI 413
           + +  AF+F YS R GTP + M +Q+ E+V   R     + L E Q    + C   V  +
Sbjct: 122 VRFDSAFTFIYSRRTGTPAAAMEDQIPEDVVKNR---FDRLLSEVQAVSAEVCGRDVHTV 178

Query: 414 IEVLIEKHGKE-KGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVK 459
             VL+E+     +G + GR      V        IG I+ V + + K
Sbjct: 179 KSVLVEELDDHVEGFVTGRLDNNTIVHFKGDRSLIGKIVDVYLDESK 225


>gi|193215424|ref|YP_001996623.1| RNA modification enzyme, MiaB family [Chloroherpeton thalassium
           ATCC 35110]
 gi|193088901|gb|ACF14176.1| RNA modification enzyme, MiaB family [Chloroherpeton thalassium
           ATCC 35110]
          Length = 338

 Score =  161 bits (408), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 109/341 (31%), Positives = 172/341 (50%), Gaps = 20/341 (5%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N  ++  + + F  QGYE V+  + ADL ++NTC + E A +K        R  
Sbjct: 8   TLGCKLNYSETASLAEQFLKQGYELVSFGEKADLTIINTCSVTENANQKC-------RQA 60

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL----PELLERARFG 146
               +K+  +  VVV GC AQ E  E L     V++V+G Q  + L    P  LE+    
Sbjct: 61  VRRALKKSPESFVVVLGCYAQLE-PEALASIDGVDLVLGAQEKFNLTHFVPSDLEKNGEA 119

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           K  V +D  + D F+    +    N +    A+L IQ+GCD  C FC +P  RG   S++
Sbjct: 120 KIYV-SDIYLHDGFDAAHSITLQTNAELRTRAYLKIQDGCDYSCAFCTIPMARGASRSQA 178

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
           +++ V +A  L+  G  EI L G NV  +      GE             +    R+R +
Sbjct: 179 VAETVRQAETLLQAGYQEIVLTGVNVGDYGTPA--GENLLDLLKALKAVPVP---RIRIS 233

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
           +  P  +S  LI    + + ++P+ H+P+QSGSD +L+ M RR+    YR+ I  I+S+ 
Sbjct: 234 SIEPNLVSSELIAFIANSNQVLPHFHMPLQSGSDEMLRGMRRRYLRSLYRERILEIKSLM 293

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDK--IGYAQAFSF 365
           P   I +D IVGFPGE+D +F+ T   ++   + Y   F+F
Sbjct: 294 PAACIGADVIVGFPGESDANFQETYQFLESLPVSYLHVFTF 334


>gi|73541046|ref|YP_295566.1| hypothetical protein Reut_A1352 [Ralstonia eutropha JMP134]
 gi|123732951|sp|Q472G1|RIMO_RALEJ RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|72118459|gb|AAZ60722.1| Protein of unknown function UPF0004:Conserved hypothetical protein
           1125 [Ralstonia eutropha JMP134]
          Length = 452

 Score =  161 bits (408), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 140/477 (29%), Positives = 222/477 (46%), Gaps = 65/477 (13%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  FV S GC   + DS ++     ++GY    + D ADL+V+NTC   ++A ++    
Sbjct: 8   PRVGFV-SLGCPKALVDSEQIITQLRAEGYAISGTYDGADLVVVNTCGFIDEAVQESLDA 66

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQ---AEGEEILRR-SPIVNVVVGPQTYYRLPEL 139
           +G         + E G   V+V GC+     A G +I+    P V  V GP   + L E+
Sbjct: 67  IGEA-------LTENGK--VIVTGCLGAKKDAAGHDIVSSVHPKVLAVTGP---HALGEV 114

Query: 140 LERARFGKRVVDTDYS-VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
           ++        V T      D F  L +   G        A+L I EGC+  C+FC++P  
Sbjct: 115 MQ-------AVHTHLPKPHDPFTDL-VPAAGIKLTPKHYAYLKISEGCNHRCSFCIIPSM 166

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTF 247
           RG  +SR +++V+ EA  L   GV E+ ++ Q+ +A           W G+ L   K   
Sbjct: 167 RGDLVSRPVAEVMLEAENLFKAGVKELLVISQDTSAYGVDVKYRTGFWNGRPL---KTRM 223

Query: 248 SDLLYSLSEIKG----LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
           ++L+ +L E+       VRL Y   +P    D +I       VL PYL +P+Q     +L
Sbjct: 224 TELVAALGELAAQYGAWVRLHYVYPYPH--VDEIIPLMNGGHVL-PYLDVPLQHAHPDVL 280

Query: 304 KSMNRRHTAYEYRQIIDRIRSVR---PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
           K M R   A    + +DRIR+ R   PD+ I S FI GFPGET+ +F   +D + +    
Sbjct: 281 KRMKRPANA---EKTLDRIRAWREVCPDLTIRSTFIAGFPGETEAEFETLLDFIAEAELD 337

Query: 361 QAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
           +   F YSP  G   +++   + + V+ ER     +   E         VGQ + VLI++
Sbjct: 338 RVGCFAYSPVEGATANDLPGALPDEVREERRARFMEVAEEVSARRLQRKVGQTLRVLIDE 397

Query: 421 HGKEKGKLVGRS----PWLQSVVL------NSKNHNIGDIIKVRITDVKISTLYGEL 467
             ++ G  +GRS    P +  +V        S+ +  GD ++V+IT      L+GE+
Sbjct: 398 VNQDGG--IGRSSADAPEIDGLVYIAPPAKPSQRYRAGDFVQVKITGADGHDLWGEI 452


>gi|303272277|ref|XP_003055500.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226463474|gb|EEH60752.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 525

 Score =  161 bits (408), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 124/425 (29%), Positives = 204/425 (48%), Gaps = 22/425 (5%)

Query: 23  VPQRFFVK--SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKV 80
            P+R  V   S GC  N  D   M    F+ G++ ++  +DAD +++NTC   E A  + 
Sbjct: 59  APRRAKVSMVSLGCPKNTVDGEVMLGDLFANGFDVIDEHEDADAVIINTCGFVEDAKNES 118

Query: 81  YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140
              +     +K    K G    ++V GC+AQ   E++      ++VV+G + Y  LP  +
Sbjct: 119 VDAILAAAAMKADSEKNGKKQKIIVTGCLAQRYAEDLAEEMSEIDVVMGFEEYKNLPAEI 178

Query: 141 ERARFGKRVVDTDYSVEDKFE-RLSIVDGGYN----RKRGVT---AFLTIQEGCDKFCTF 192
            ++  G  V+  D     +   R+      +     RKR      A+L + EGCD  CTF
Sbjct: 179 GQS-LGVDVLRQDDGGNKRGRVRVGTASPPFRPEALRKRLTPNHYAYLRVAEGCDHKCTF 237

Query: 193 CVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW--RGKGLDGEKCTFSDL 250
           C +P  RG   S+    +VDEA+ L D G  E+ L+ ++ N W    K  DG     ++L
Sbjct: 238 CAIPGFRGKFRSKPWDSIVDEAKALADTGAKELCLIAEDTNQWGMDMKASDGR--GLAEL 295

Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN--- 307
           L  L+ + G+  +R   ++P   S+ LI A  D+  +  Y+ +P+Q  ++  L  MN   
Sbjct: 296 LERLAVVDGVEWIRILYAYPSYFSEELIDAIADIPQVCKYIDIPLQHITNLSLLRMNRPP 355

Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           R+HT     ++ DRI    P +A+ + FI GFPGET ++    M    +  + +  +F Y
Sbjct: 356 RQHTEDLLHKLRDRI----PGLALRTTFISGFPGETQEEHDDLMKFCKEFKFQRLGAFAY 411

Query: 368 SPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK 427
           S   GTP +   +QV+  V+  R   L  + ++    F  + VGQ ++V+I+    +   
Sbjct: 412 SEEDGTPAAEYPDQVELAVRELRRDQLISQQQDISEDFALSRVGQELDVIIDGFNPDFDA 471

Query: 428 LVGRS 432
            VGRS
Sbjct: 472 WVGRS 476


>gi|217977076|ref|YP_002361223.1| MiaB-like tRNA modifying enzyme YliG [Methylocella silvestris BL2]
 gi|217502452|gb|ACK49861.1| MiaB-like tRNA modifying enzyme YliG [Methylocella silvestris BL2]
          Length = 457

 Score =  161 bits (407), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 128/466 (27%), Positives = 220/466 (47%), Gaps = 58/466 (12%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
            P+  FV S GC   + DS ++     ++GYE   S D A  +++NTC   + A  +   
Sbjct: 24  APRIAFV-SLGCPKALVDSEQIISRLRAEGYELTKSYDGAAAVIVNTCGFLDSAKAESLE 82

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +G           +  +  ++V GC+  AE E I  R P +  + GPQ +  + + +  
Sbjct: 83  AIG---------AAQAANGKIIVTGCMG-AEPEGISTRFPDLFRITGPQDFDSVMQAVHA 132

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           A    R  D  + +        I   G        A+L I EGC+  C+FC++P  RG  
Sbjct: 133 A--APRPHDAKFDL--------IPAQGVKLTPRHYAYLKISEGCNNRCSFCIIPKLRGDL 182

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD--------GE---KCTFSDLL 251
            SR  ++++ EA KL+  GV E+ ++ Q+ +A+   GLD        G+   K  F DL+
Sbjct: 183 ASRPAAEILREAEKLVAAGVRELLVISQDTSAY---GLDLRYSESMFGDRVVKAKFIDLI 239

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
             L  +   VRL Y   +P       + A G   +++PYL +P Q  S  +L++M R   
Sbjct: 240 RELGALGVWVRLHYVYPYPHVDEAIELMAQG---LVLPYLDIPFQHASKEVLRAMKRPGD 296

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
             +  + I + R++ P++AI S FIVGFPGETD+DF   +D ++     +  +FKY P  
Sbjct: 297 QEKTLERIRKWRTICPELAIRSTFIVGFPGETDEDFAILLDWLEAAKLDRVGAFKYEPVE 356

Query: 372 GTPGSNM----LEQVDENVKAERLL-----CLQKKLREQQVSFNDACVGQIIEVLIEKHG 422
           G   +++    +    ++++  R +        KKL+E+        +G+ ++V+I+  G
Sbjct: 357 GAAANSLGRAFVPAEIQDLRYRRFMERAQTISAKKLKEK--------IGRRLQVIIDVGG 408

Query: 423 KEK-GKLVGRSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYG 465
           +E  G+    +P +   V  +    +  G+I+ V+I       LYG
Sbjct: 409 REAVGRSKADAPEIDGKVFVASRRPLRTGEIVTVKIERANAYDLYG 454


>gi|154248395|ref|YP_001419353.1| MiaB-like tRNA modifying enzyme YliG [Xanthobacter autotrophicus
           Py2]
 gi|238055317|sp|A7INV0|RIMO_XANP2 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|154162480|gb|ABS69696.1| MiaB-like tRNA modifying enzyme YliG [Xanthobacter autotrophicus
           Py2]
          Length = 449

 Score =  161 bits (407), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 136/464 (29%), Positives = 212/464 (45%), Gaps = 48/464 (10%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
            P+  FV S GC   + DS R+     ++GYE   +   ADL+V+NTC   + A  +  +
Sbjct: 14  APRISFV-SLGCPKALVDSERIVTRLRAEGYELTKTHQGADLVVVNTCGFLDSAKAESLN 72

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +G         + E G   VVV GC+  AE E+I    P V  + GPQ Y  +   +  
Sbjct: 73  AIGEA-------LAENGK--VVVTGCMG-AEPEQIREVHPSVLAITGPQQYESVLAAVHE 122

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           A              D F  L   +G     R   A+L I EGC   CTFC++P  RG  
Sbjct: 123 AV---------PPAHDPFLDLVPAEGVKLTPRHY-AYLKISEGCSNRCTFCIIPKLRGDL 172

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD--------GEK---CTFSDLL 251
           +SR    V+ EA +L+  GV E+ ++ Q+ +A+   G+D        G+K     F DL 
Sbjct: 173 VSRPAGDVLREAERLVKAGVKELLVISQDTSAY---GVDLRYATSPWGDKEVAARFLDLA 229

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
            +L ++   VRL Y   +P   +   + A G +   +PYL +P Q  S  +LK M R  +
Sbjct: 230 GALGDLGAWVRLHYVYPYPHVDAVMELMAAGKV---LPYLDIPFQHASPTVLKRMKRPAS 286

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
             +    I   R+  PD+ + S FIVGFPGET+ +F   +  +++    +A  FK+ P  
Sbjct: 287 QEKTLARIQAWRAAVPDLTLRSTFIVGFPGETEAEFEELLGFLEEAEIDRAGCFKFEPVR 346

Query: 372 GTPGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--G 426
           G   + +   V + VKAE   R +  Q+K+  +++      VG    V+I+    +   G
Sbjct: 347 GADANALENPVPDAVKAERYDRFMRTQQKVSARRLKRK---VGTRQSVIIDTVTPDGGIG 403

Query: 427 KLVGRSPWLQSV--VLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           +  G +P +     V   +   +G+I  V+I       L G  V
Sbjct: 404 RTKGDAPEIDGTVKVFARRPLRVGEIATVKIEAAGPYDLSGTAV 447


>gi|303229340|ref|ZP_07316130.1| ribosomal protein S12 methylthiotransferase RimO [Veillonella
           atypica ACS-134-V-Col7a]
 gi|302515876|gb|EFL57828.1| ribosomal protein S12 methylthiotransferase RimO [Veillonella
           atypica ACS-134-V-Col7a]
          Length = 448

 Score =  161 bits (407), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 119/414 (28%), Positives = 208/414 (50%), Gaps = 24/414 (5%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ D+  M  +    GY   +++ +ADLI++NTC   EKA E+  + +     L
Sbjct: 9   SLGCAKNLVDTEVMLGLLKDDGYTITDNLHEADLIIINTCTFIEKAKEESINTI-----L 63

Query: 91  KNSRIKEGGDLL-VVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149
           + ++ KE G    ++VAGC++Q   +E+    P ++ ++G   + ++   ++    G R 
Sbjct: 64  EAAQYKETGRCKGLIVAGCLSQQYQDELFTEIPEIDALIGTGAWDQIMVAVDAIEHGNRS 123

Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209
              +       ER+  +          +A++ I EGC+  CTFC++P  RG   SRS+  
Sbjct: 124 CIMENITNIYDERMPRI----QTTPRYSAYVKIAEGCNNGCTFCIIPKVRGAFRSRSIES 179

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSH 269
           +  E  +L  +GV EI L+ Q+  ++ G  L+  K   ++LL  L++++G+  +R    +
Sbjct: 180 IKAEVERLATSGVKEIVLIAQDTTSY-GIDLNNGKPLLTELLKELTKVEGIEWIRMLYLY 238

Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329
           P   SD L+    +   L  Y+ +P+Q  ++ ILK MNRR +  +  +++ +IR+    +
Sbjct: 239 PTFFSDELLDIIVNEPKLCKYVDIPLQHVNNDILKQMNRRDSREDIERLLKKIRNAPTHV 298

Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAE 389
            + +  IVGFPGETD+ F+   + V  I +     F YS   GT      +QV E VK E
Sbjct: 299 TLRTSIIVGFPGETDEQFQELCEFVKDIKFDNMGVFTYSQEEGTIAGAREDQVPEEVKEE 358

Query: 390 R---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-------EKGKLVGRSP 433
           R   L+ +Q  + E+    N    G I   +IE+  +        KG+L  ++P
Sbjct: 359 RYHTLMSIQAAISEEN---NRDLEGTIDYAMIEELEEGDNDTVLAKGRLKSQAP 409


>gi|296135795|ref|YP_003643037.1| MiaB-like tRNA modifying enzyme YliG [Thiomonas intermedia K12]
 gi|295795917|gb|ADG30707.1| MiaB-like tRNA modifying enzyme YliG [Thiomonas intermedia K12]
          Length = 466

 Score =  161 bits (407), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 132/470 (28%), Positives = 209/470 (44%), Gaps = 57/470 (12%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC   + DS R+     +QGY+   S   ADL+++NTC   + A ++    +G     
Sbjct: 22  SLGCPKALVDSERILTELRAQGYDTSKSYAGADLVIVNTCGFIDAAVQESLDAIGEA--- 78

Query: 91  KNSRIKEGGDLLVVVAGCVAQ----AEGEEILRR-SPIVNVVVGPQTYYRLPELLERARF 145
               + E G   V+V GC+      A G  ++R   P V  V GP       E+L+    
Sbjct: 79  ----LAENGK--VIVTGCLGARNDAATGNNLVREVHPKVLAVTGPHA---TDEVLQHVH- 128

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
              V+   +   D F  L +   G        A+L I EGC+  CTFC++P  RG  +SR
Sbjct: 129 --AVLPKPH---DPFIDL-VPPAGIKLTPKHYAYLKISEGCNHRCTFCIIPAMRGDLVSR 182

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYSL 254
            + +V+ EAR L  +GV E+ ++ Q+ +A           W G+ +        D L SL
Sbjct: 183 PIGEVLSEARALFASGVKELLVVSQDTSAYGVDVKYRTGFWDGRPIRTRMTELVDALGSL 242

Query: 255 S-EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
           + E    VRL Y   +P       + A G +   +PYL +P+Q     +LK M R  +  
Sbjct: 243 AAEHDAWVRLHYVYPYPHVDEVLPLMAQGRI---LPYLDVPLQHAHPDVLKRMKRPASGE 299

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
              + I R R + P++ + S FI GFPGET+ +F+  +D + +    +   F YSP  G 
Sbjct: 300 RNLERIARWREICPELVVRSTFIAGFPGETEAEFQTLLDFIREAELDRVGCFAYSPVEGA 359

Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSP 433
             + + + V E ++ ER         E         VGQ++ VL+++  +E G  VGR+ 
Sbjct: 360 AANALADPVPEALREERRARFMAVAEEVSTRKLHKRVGQVMRVLVDQASREGG--VGRT- 416

Query: 434 WLQSVVLNSKNHNI---------------GDIIKVRITDVKISTLYGELV 468
           +  +  ++ K H +               G  ++ RI       L GELV
Sbjct: 417 FADAPEIDGKVHLLPPDKPSTKMRLAQSGGQFVRARIVRTDGHDLVGELV 466


>gi|328718445|ref|XP_001945556.2| PREDICTED: CDK5 regulatory subunit-associated protein 1-like 1-like
           [Acyrthosiphon pisum]
          Length = 522

 Score =  161 bits (407), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 123/457 (26%), Positives = 214/457 (46%), Gaps = 41/457 (8%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           Q  F+K++GC  N  D   M  +  + GY+       ADL +LN+C ++  A +      
Sbjct: 56  QTIFIKTWGCSHNSSDGEYMAGLLSNYGYKITEDKAIADLWILNSCTVKNPAED------ 109

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVN--VVVGPQTYYRLPELLER 142
              RN  ++  K G    VVVAGCV Q +     ++SP +    V+G Q   R+ E++E 
Sbjct: 110 -HFRNEISTGKKSGK--FVVVAGCVPQGD-----QKSPFIQNLSVIGVQQIDRVVEVVEE 161

Query: 143 ARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
              G  + +     +  K +  + +     RK  +   + I  GC   CT+C   + RG 
Sbjct: 162 TLKGHTIRLLGQKKINGKKDGGARLQLPKMRKNKLIEIIAISTGCLNQCTYCKTKHARGN 221

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK--- 258
             S    ++V  A +  + G  E+ L  ++  A+   GLD +     +LL+ L  I    
Sbjct: 222 LGSYPPDEIVQRAIESFNEGAVELWLTSEDTGAY---GLDIQ-TNLPELLWRLVAIIPEG 277

Query: 259 -----GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
                G+    Y  +H  +++  L         +  +LH+PVQSGS+++L  M R ++  
Sbjct: 278 CMMRIGMTNPPYILNHLEEIAKILSHPR-----VYAFLHVPVQSGSNQVLADMKREYSIE 332

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
           E+  +++ +R   P ++I++D I GFP ET++DF  TM + +K  +   F  ++ PR GT
Sbjct: 333 EFETVVNFLRQRVPGVSIATDIICGFPTETEEDFSETMSVCEKYKFPSLFINQFYPRKGT 392

Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFN--DACVGQIIEVLIEKHGKEKGKLVGR 431
           P + M +   + VK        K+L E   S+   D  +G+I E+LI +  K   + +G 
Sbjct: 393 PAARMPKIPTDMVKIR-----TKRLTELFHSYTTYDHRIGEIQEILITEEAKNGIEFIGH 447

Query: 432 SPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           + + + V++      +G  I+V +   K   L  E+V
Sbjct: 448 NKYYEQVLVAKDPELMGKCIEVIVKSAKKHCLIAEMV 484


>gi|313203633|ref|YP_004042290.1| miab-like tRNA modifying enzyme [Paludibacter propionicigenes WB4]
 gi|312442949|gb|ADQ79305.1| MiaB-like tRNA modifying enzyme [Paludibacter propionicigenes WB4]
          Length = 436

 Score =  161 bits (407), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 109/395 (27%), Positives = 194/395 (49%), Gaps = 17/395 (4%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N  ++  +      +G+ +V + + AD+ ++NTC + + A  K    + R+   
Sbjct: 16  TLGCKLNFAETSAIGKQLTDEGFAKVKTGEQADICIINTCSVTDTADHKCRQAINRLN-- 73

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
                ++  D +++V GC AQ + EE+      V++V+G    + + E +++   G    
Sbjct: 74  -----RQHPDAIMIVTGCYAQLKPEEVAAIDG-VDLVLGANEKFNVLEYIQKLD-GTEKS 126

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
           +   S   + +R+       +R      FL +Q+GCD FCT+C +PY RG   + ++ + 
Sbjct: 127 EIHRS---EIKRVREFKPSCSRDDRTRYFLKVQDGCDYFCTYCTIPYARGRSRNATIPET 183

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270
           V  A + ++ G  EI L G N+  + GK   GE  +F DL+ +L  I   VR R ++  P
Sbjct: 184 VAMAMQAVEAGAKEIVLSGVNIGDF-GKST-GE--SFFDLVKALDTIPADVRFRISSIEP 239

Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330
             ++D +I         MP+ H+P+QSG++ +L+ M R++    +   ++ I+S+ P   
Sbjct: 240 NLLTDEIITYISTSHRFMPHFHIPLQSGTNEVLQLMKRKYNRELFAHKVELIKSLLPHAF 299

Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER 390
           I  D IVG  GETD+ F  +   +D +  +Q   F YS R GT   ++   V  N +  R
Sbjct: 300 IGVDVIVGVRGETDELFEQSCRFIDSLDISQLHVFTYSERAGTKMLDIEYTVSLNERKRR 359

Query: 391 LLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKE 424
              L     ++  +F    VG    VL E +H  E
Sbjct: 360 SNVLHSLSEKKTKAFYQNQVGNTYPVLWESRHNGE 394


>gi|289547853|ref|YP_003472841.1| MiaB-like tRNA modifying enzyme YliG [Thermocrinis albus DSM 14484]
 gi|289181470|gb|ADC88714.1| MiaB-like tRNA modifying enzyme YliG [Thermocrinis albus DSM 14484]
          Length = 421

 Score =  161 bits (407), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 118/441 (26%), Positives = 219/441 (49%), Gaps = 41/441 (9%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R  V S GC  N+ D+  +       G + VN    AD+I++NTC   ++A E+    + 
Sbjct: 2   RVAVISLGCAKNLVDTEVLLGKLVKGGAKLVNDPSKADVIIVNTCGFIQQAKEEA---ID 58

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL--ERA 143
            I +  + + K      VVV GC+ +   EE+ +  P V+   G +++ ++ + L  +  
Sbjct: 59  TILDWADGKRK------VVVMGCLVERYREEMKKEFPEVSAFFGTESWDQIIQYLGLKEV 112

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           +  +RV+ T  S                      A+L + EGC++ C+FC +P  RG   
Sbjct: 113 KSSERVLTTPPSY---------------------AYLKVAEGCNRTCSFCAIPLIRGRHR 151

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           S+ L  +++EAR L + GV E+ ++ Q+   + GK L   K     LL  L E++G+  +
Sbjct: 152 SKPLEDLLEEARNLAERGVKELCIVSQD-TGYYGKDLYHRK-ALVQLLKKLEELEGIEWI 209

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R    +P D+ + L+    D   ++PYL +P+Q  SDR+LKSM R ++    R+++D + 
Sbjct: 210 RLLYLYPTDVDEELLSYLKDSGKVLPYLDIPLQHVSDRVLKSMRRGYSGSFVRRLLDEVM 269

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
               ++ + + F+VG+P E ++DFR  +  V++  +     F YS    TP   + + + 
Sbjct: 270 KNLDNVVLRTTFLVGYPEEREEDFRELLRFVEEGYFHWVGVFTYSHEENTPAYPLGDPIP 329

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL-VGR----SPWLQSV 438
           ++ K  R   + K  +E     N   VG+ +++L++ + +E G + VGR    +P +  +
Sbjct: 330 QDEKELRRDAIMKAQQEITFRKNAQLVGREMDLLVDSYDEELGIVPVGRVYLQAPEVDGI 389

Query: 439 VLNSKNHNI--GDIIKVRITD 457
                +  I  G+ +KV++T+
Sbjct: 390 CYVEADRPISPGEKLKVKVTE 410


>gi|126322223|ref|XP_001375874.1| PREDICTED: similar to CDK5 regulatory subunit associated protein
           1-like 1 [Monodelphis domestica]
          Length = 595

 Score =  161 bits (407), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 125/458 (27%), Positives = 220/458 (48%), Gaps = 43/458 (9%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           Q+ +++++GC  N  D   M     + GY+   +  +ADL +LN+C ++  A +    F 
Sbjct: 63  QKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENPSEADLWLLNSCTVKNPAEDH---FR 119

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG-EEILRRSPIVNVVVGPQTYYRLPELLERA 143
             I+  +        D  VV+AGCV QA+  ++ L+   I+ V    Q   R+ E++E  
Sbjct: 120 NSIKKAQEE------DKKVVLAGCVPQAQPRQDYLKGLSIIGV----QQIDRVVEVVEET 169

Query: 144 RFGKRVVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
             G  V        +  +RL  + +D    RK  +   ++I  GC   CT+C   + RG 
Sbjct: 170 IKGHSVRLLGQKKSNG-KRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGN 228

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-RGKGLDGEKCTFSDLLYSLSEI--- 257
             S  + ++VD A++    GVCEI L  ++  A+ R  G D        LL+ L E+   
Sbjct: 229 LASYPIDELVDRAKQSFQEGVCEIWLTSEDTGAYGRDIGTD-----LPTLLWKLVEVIPE 283

Query: 258 -----KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
                 G+    Y   H  +M+  L         +  +LH+PVQS SD +L  M R +  
Sbjct: 284 GAMLRLGMTNPPYILEHLEEMAKILNHPR-----VYAFLHIPVQSASDSVLMEMKREYCV 338

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
            ++++++D ++   P + I++D I GFPGETD DF+ T+ LV+   +   F  ++ PR G
Sbjct: 339 ADFKRVVDFLKEKVPGLTIATDIICGFPGETDQDFQDTLKLVEDYKFPSLFINQFYPRPG 398

Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFN--DACVGQIIEVLIEKHGKEKGKLVG 430
           TP +  ++QV  +VK +R     K L +   S+N  D  +G+  +VL+ +   +    V 
Sbjct: 399 TPAAK-IQQVPAHVKKQRT----KDLSQLFHSYNPYDHKIGERQQVLVTEESFDSKFYVA 453

Query: 431 RSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            + + + V++      +G +++V I +     + G+ V
Sbjct: 454 HNQFYEQVLVPKNPMFMGKMVEVDIYESGKHFMKGQPV 491


>gi|257094456|ref|YP_003168097.1| MiaB-like tRNA modifying enzyme YliG [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257046980|gb|ACV36168.1| MiaB-like tRNA modifying enzyme YliG [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 441

 Score =  161 bits (407), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 129/470 (27%), Positives = 217/470 (46%), Gaps = 59/470 (12%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+     S GC   + DS ++     ++GY    S + ADL+++NTC   + A E+    
Sbjct: 4   PKNVGFVSLGCPKALVDSEQILTRLRAEGYLISPSYEGADLVLVNTCGFIDAAVEESLDA 63

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRS-PIVNVVVGPQT--------YY 134
           +G         + E G   V+V GC+   E  +++R++ P V  V GP          + 
Sbjct: 64  IGEA-------LAENGK--VIVTGCLGSRE--DLIRKAHPQVLAVTGPHATDAVLQHVHA 112

Query: 135 RLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCV 194
            LP+                   D F  L +   G        A+L I EGC+  CTFC+
Sbjct: 113 HLPQ-----------------PHDPFTSL-VPPQGIKLTPPHFAYLKISEGCNHSCTFCI 154

Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCT 246
           +P  RG  +SR +  V+ EAR L D+GV E+ ++ Q+ +A+      R   + G   +  
Sbjct: 155 IPSMRGPLVSRPIGDVLQEARTLADSGVRELLVISQDTSAYGVDLKYRTGFVGGRPVRTR 214

Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306
             +L  +L ++   VRL Y   +P   +   + A G L   +PYL +P Q  S R+L +M
Sbjct: 215 LRELCEALGDLGIWVRLHYVYPYPSVDALVPLMAEGRL---LPYLDVPFQHASARVLAAM 271

Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
            R  +A    + +   R + P+I I S FI GFPGET+ +F   +  + +    +   F 
Sbjct: 272 KRPASAENNLERVRAWRDICPEITIRSTFITGFPGETESEFEELLAFLAEARLDRVGCFA 331

Query: 367 YSPRLGTPGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK 423
           YSP  G   + +   + + V+ E   RL+ LQ+ +  + ++   A +G+ I VL+++   
Sbjct: 332 YSPVAGAAANALPGALPDEVREERRQRLMALQEDISAELLA---ARIGREINVLVDEVDD 388

Query: 424 EK--GKLVGRSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELVV 469
           E    +    +P +  +V  + + +   GD ++VR+ D     LY ELV 
Sbjct: 389 EGTIARSAADAPEIDGLVFINDHFDAEPGDFLRVRVVDADEHDLYAELVT 438


>gi|289432755|ref|YP_003462628.1| MiaB-like tRNA modifying enzyme [Dehalococcoides sp. GT]
 gi|288946475|gb|ADC74172.1| MiaB-like tRNA modifying enzyme [Dehalococcoides sp. GT]
          Length = 416

 Score =  161 bits (407), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 112/405 (27%), Positives = 190/405 (46%), Gaps = 33/405 (8%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           + + GC++N  ++  M   F   GY  V+  D+ D+ +LNTC +   A  K   +  RI 
Sbjct: 6   LDTLGCKLNQAETEAMGREFAQAGYHLVSPQDNWDIYILNTCTVTHVADRKA-RYQMRIA 64

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
              N          + + GC A+    EI    P  N+++                  ++
Sbjct: 65  RRHNP------SGFICLTGCYAENGENEI--SCPDANLILD----------------NRQ 100

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
             D   ++   F   +     Y + R   +F+ IQ+GCD FCT+C+VP+ R  +  R + 
Sbjct: 101 KTDIVNNIVRLFPLENSASALYEKGR-TRSFIKIQDGCDNFCTYCIVPFVRRYKNCRGVD 159

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
            ++ E       G  EI L G  +  +   G +      + L+ ++ E   + RLR ++ 
Sbjct: 160 DIISEINLRQAEGYQEIVLTGTEIGEYTSSGFN-----LAGLIEAILERTRIPRLRLSSL 214

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
            P +++  L+    +   L  + H+ +QSGSDRIL  MNR ++  +Y + ++ IR   PD
Sbjct: 215 QPNEITLPLLALWKNRR-LCNHFHMALQSGSDRILGLMNRSYSLTDYTRTLEAIRRQIPD 273

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           +A+++D IVGFPGETD+DF  ++  V++ G+A+   F YS R GT  S + ++VD  V  
Sbjct: 274 VAVTTDTIVGFPGETDEDFACSLKYVEQAGFARVHPFPYSERPGTMASQLTDKVDPVVIK 333

Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSP 433
            RL  +    +   + +         EVL E   K+ G   G +P
Sbjct: 334 TRLSGMMLAAKNASLEYRHQSRDLEKEVLWENKMKD-GLWFGYTP 377


>gi|304320388|ref|YP_003854031.1| hypothetical protein PB2503_04072 [Parvularcula bermudensis
           HTCC2503]
 gi|303299290|gb|ADM08889.1| hypothetical protein PB2503_04072 [Parvularcula bermudensis
           HTCC2503]
          Length = 384

 Score =  161 bits (407), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 113/401 (28%), Positives = 188/401 (46%), Gaps = 52/401 (12%)

Query: 64  LIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPI 123
           ++V+NTC +  +A  +    + R R       K+  +  ++V+GC  + + + +     I
Sbjct: 12  VVVINTCAVTNEAVRQSRQAIRRAR-------KDHPEAKLIVSGCAVETDRDRLAAMPEI 64

Query: 124 VNVV-----VGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTA 178
            +++     + P++Y      L R+                              + V A
Sbjct: 65  DHLIPNADKLKPESYAGATAPLSRS-----------------------------PQPVRA 95

Query: 179 FLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK 238
            L IQ GCD  CTFC++P  RG   SR +++ V EA  L+  G  EI L G ++ ++ G 
Sbjct: 96  PLAIQNGCDHSCTFCIIPQGRGRAQSRPIAEAVAEAHALVAAGAREIVLTGVDLTSY-GD 154

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
            L+G       +   L+ +   + LR ++    ++ D L +   + D + PY HL +Q+G
Sbjct: 155 DLEGGVTLADPIEVLLTSLPAAITLRLSSLDGAEVDDRLFRLLTEEDRVAPYAHLSLQAG 214

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
            D  LK M RRH   +   + DR+R+ RPD A  +D I GFP ET++ F A++D   + G
Sbjct: 215 HDLTLKRMKRRHLTADAIDLTDRLRTARPDFAFGADLIAGFPTETEEMFAASLDHAARCG 274

Query: 359 YAQAFSFKYSPRLGTPGSNMLEQVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIE 415
            A    F +SPR+GTP + M  Q+D  V   +A+RL  L   L    +   D  +GQ + 
Sbjct: 275 LAFLHVFPFSPRVGTPAARM-PQIDRAVVKDRAKRLRALGDDLLAAHL---DRLIGQRVA 330

Query: 416 VLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRIT 456
           VLIE+       L+GR P    + + ++    G+ I   +T
Sbjct: 331 VLIEQ--TSGTHLIGRLPNFTEIEVEAEG-QAGERIMAHVT 368


>gi|326404964|ref|YP_004285046.1| threonylcarbamoyladenosine tRNA methylthiotransferase [Acidiphilium
           multivorum AIU301]
 gi|325051826|dbj|BAJ82164.1| threonylcarbamoyladenosine tRNA methylthiotransferase [Acidiphilium
           multivorum AIU301]
          Length = 411

 Score =  161 bits (407), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 109/350 (31%), Positives = 172/350 (49%), Gaps = 25/350 (7%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           + ++GC++N ++S  M      +G+     + DA  +++NTC +  +A  +    + R  
Sbjct: 5   ILTFGCRLNAFESEVM------RGHAEAAGLGDA--VIVNTCAVTAEAERQARQAIRRAH 56

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
                R   G    ++V GC AQ +         +  V+   +     PE   R+     
Sbjct: 57  -----RADPGAK--IIVTGCAAQIDPAAWSSIEGVARVLGNAEKLT--PEAW-RSEAPVL 106

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           V D    ++ +     +++G   R R   AF+ +Q+GCD  CTFC++PY RG   S  L 
Sbjct: 107 VADI---MQLRQTAAHLIEGFGTRAR---AFIEVQQGCDHRCTFCIIPYGRGPSRSIPLG 160

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
            VV++ R L+ NG  E+ L G ++ ++ G  L G           L+ +  L RLR ++ 
Sbjct: 161 AVVEQVRTLVANGYNEVVLTGVDLTSY-GADLPGAPKLGQLCRRLLAAVPDLPRLRLSSI 219

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
            P ++ D L +       LMP+LHL VQ+GSD ILK M RRH  +   +   R R++RPD
Sbjct: 220 DPAEIDDDLWRLLESEPRLMPHLHLSVQAGSDLILKRMKRRHLRHHVIEAAVRARALRPD 279

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           IA+ +D I GFP ET+  F  T+ LVD  G      F +S R GTP + +
Sbjct: 280 IALGADLIAGFPTETEAHFAETLALVDDAGLDYLHVFPFSARKGTPAARI 329


>gi|293368846|ref|ZP_06615450.1| MiaB-like protein [Bacteroides ovatus SD CMC 3f]
 gi|292636151|gb|EFF54639.1| MiaB-like protein [Bacteroides ovatus SD CMC 3f]
          Length = 439

 Score =  161 bits (407), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 120/433 (27%), Positives = 212/433 (48%), Gaps = 29/433 (6%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N  ++  +  +    G       + AD+ V+NTC + E A +K    + R+   
Sbjct: 16  TLGCKLNFSETSTIGKILREAGVRTARKGEKADICVVNTCSVTEMADKKCRQAIHRL--- 72

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL---ERARFGK 147
               +K+     VVV GC AQ +  ++ +    V+VV+G +    L + L   ++   G+
Sbjct: 73  ----VKQHPGAFVVVTGCYAQLKPGDVAKIDG-VDVVLGAEQKGELLQYLGDLQKHEKGE 127

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
            +  T   +       S  D    R R    FL +Q+GCD FC++C +P+ RG   + ++
Sbjct: 128 AITTTTKDIRSFSPSCSRGD----RTR---FFLKVQDGCDYFCSYCTIPFARGRSRNGTI 180

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
           + +V++AR+    G  EI L G N+  + GK   GE  +F DL+ +L +++G+ R R ++
Sbjct: 181 ASMVEQARQAAAEGGKEIVLTGVNIGDF-GK-TTGE--SFFDLVKALDQVEGIERYRISS 236

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
             P  ++D +I+        MP+ H+P+QSG D +L+ M RR+    +   + +I+ V P
Sbjct: 237 IEPNLLTDEIIEFVSHSRSFMPHFHIPLQSGCDEVLQLMRRRYDTALFASKVKKIKEVMP 296

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG---SNMLEQVDE 384
           D  I  D IVG  GET + F      +D +   Q   F YS R GT       ++   ++
Sbjct: 297 DAFIGVDVIVGTRGETPEYFEQAYQFIDGLDVTQLHVFSYSERPGTQALKIEYVVSPEEK 356

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
           + +++RLL L  +  +   +F    +GQ + VL+EK  K    + G +     V + S +
Sbjct: 357 HQRSQRLLALSDQKTQ---AFYARHIGQTMPVLMEK-SKAGAPMHGFTENYIRVEVESDD 412

Query: 445 HNIGDIIKVRITD 457
                ++ VR+ D
Sbjct: 413 SLDNQVVNVRLGD 425


>gi|295676480|ref|YP_003605004.1| MiaB-like tRNA modifying enzyme YliG [Burkholderia sp. CCGE1002]
 gi|295436323|gb|ADG15493.1| MiaB-like tRNA modifying enzyme YliG [Burkholderia sp. CCGE1002]
          Length = 480

 Score =  161 bits (407), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 129/473 (27%), Positives = 214/473 (45%), Gaps = 51/473 (10%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
            P+  FV S GC   + DS ++     ++GYE   + + ADL+V+NTC   ++A ++   
Sbjct: 31  TPKVGFV-SLGCPKALVDSEQIITQLRAEGYEISGTYNGADLVVVNTCGFIDEAVQESLD 89

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVA---QAEGEEILRR-SPIVNVVVGPQTYYRLPE 138
            +G   N       E G   V+V GC+     A G  ++    P V  V GP     + +
Sbjct: 90  AIGEALN-------ENGK--VIVTGCLGAKKSASGSGLIEEVHPKVLAVTGPHAVGEVMQ 140

Query: 139 LLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
            +  +   K          D F  L +   G        A+L I EGC+  CTFC++P  
Sbjct: 141 AV-HSHLPKP--------HDPFVDL-VPAAGVKLTPRHYAYLKISEGCNHRCTFCIIPSM 190

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTF 247
           RG  +SR +++V+ EA  L  +GV E+ ++ Q+ +A           W GK +   K   
Sbjct: 191 RGDLVSRPVAEVMLEAENLFKSGVKELLVISQDTSAYGVDVKYRTGFWNGKPI---KTRM 247

Query: 248 SDLLYSLSEIKG----LVRLRYTTSHPR-DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
           +DL+ +L E+       VRL Y   +P  D    ++ A      ++PYL +P Q     +
Sbjct: 248 TDLVAALGELAAQYGAWVRLHYVYPYPSVDEVIPMMAAGPYKGHVLPYLDVPFQHAHPEV 307

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           LK M R   A +  + +   R + PD+ I S FI GFPGET++ F   +D + +    + 
Sbjct: 308 LKRMKRPANAEKVMERVKAWREICPDLTIRSTFIAGFPGETEEQFETLLDFIREAELDRV 367

Query: 363 FSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422
             F YSP  G   + +   + + V+ ER     +   +         VG+ ++VL+++  
Sbjct: 368 GCFAYSPVEGASANELDGALPDEVRGERRARFMEVAEQVSAKRIAKKVGKTLKVLVDEIN 427

Query: 423 KEK--GKLVGRSPWLQSVVL------NSKNHNIGDIIKVRITDVKISTLYGEL 467
            +   G+    +P +  VV        SK + +GD + V+IT      L+GE+
Sbjct: 428 ADGGIGRTAADAPEIDGVVYIAPSTKASKRYKVGDFVSVKITGADGHDLWGEV 480


>gi|222087519|ref|YP_002546056.1| hypothetical protein Arad_4404 [Agrobacterium radiobacter K84]
 gi|221724967|gb|ACM28123.1| conserved hypothetical protein [Agrobacterium radiobacter K84]
          Length = 424

 Score =  161 bits (407), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 119/403 (29%), Positives = 187/403 (46%), Gaps = 36/403 (8%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V ++GC++N Y+S  M       G          + I++NTC +  +A  +         
Sbjct: 6   VITFGCRLNTYESEVMRAEAEKAGLN--------NAILVNTCAVTGEAVRQARQ------ 51

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ------TYYRLPELLER 142
                  ++     ++V GC AQ E +     +  V+ V+G +      +Y  LP+    
Sbjct: 52  -AIRRARRDNPHARIIVTGCAAQTEKQTFAEMAE-VDAVLGNEEKLTSASYRSLPDFGVS 109

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           A    RV D         + +  +DG       V AF+ +Q GCD  CTFC++PY RG  
Sbjct: 110 AEEKLRVNDIMSVRHTAPQMVKHIDGH------VRAFIQVQNGCDHRCTFCIIPYGRGNS 163

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT---FSDLLYSLSEIKG 259
            S  +  VV +AR L+++G  EI L G +  ++ G  L GE         LL  + EI+ 
Sbjct: 164 RSVPMGAVVSQARNLVESGYREIVLTGVDATSY-GGDLPGEPTLGLLAKTLLKQIPEIR- 221

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
             RLR ++    +    L+    D    MP+LHL +Q G D ILK M RRH+  +  + I
Sbjct: 222 --RLRLSSIDSIEADAHLLDLIADEPRFMPHLHLSLQHGDDMILKRMKRRHSRADAIRFI 279

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
           + +R +RP+++  +D I GFP ET   F   + L ++   A    F YSPR GTP + M 
Sbjct: 280 EDVRRLRPEMSFGADMIAGFPTETGAMFENAVSLAEEAAIAHLHVFPYSPRPGTPAARM- 338

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422
            Q+D  +  ER   L+   +    +  D+ VG    +L+E +G
Sbjct: 339 PQLDRALIKERAARLRAAGQRLHQAHLDSMVGTRQWLLVENNG 381


>gi|281425800|ref|ZP_06256713.1| 2-methylthioadenine synthetase [Prevotella oris F0302]
 gi|281400061|gb|EFB30892.1| 2-methylthioadenine synthetase [Prevotella oris F0302]
          Length = 446

 Score =  161 bits (407), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 117/405 (28%), Positives = 193/405 (47%), Gaps = 33/405 (8%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N  ++     M    G       ++AD+ ++NTC + + A  K    + R+   
Sbjct: 16  TLGCKLNFSETSTFGKMLSDMGVVTAAKGEEADICLINTCSVTDVADHKCRQAIHRM--- 72

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               ++E     ++V GC AQ E E +  + P V++V+G      L + L  A F  R  
Sbjct: 73  ----VRENPGAFIIVTGCYAQLESERV-SKIPGVDLVLGSNEKANLIQYLNDA-FIDRTA 126

Query: 151 DTDYSVEDKFERLSIVD-----GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            T    + K+  +   D        +R      FL +Q+GC+ FCT+C +PY RG   + 
Sbjct: 127 GT---AQHKYHAVRTKDIKTFQASCSRGNRTRYFLKVQDGCNYFCTYCTIPYARGFSRNP 183

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC--TFSDLLYSLSEIKGLVRL 263
           S++ +V +A +    G  EI L G N+  +      GE     F DL+ +L +++G+ R 
Sbjct: 184 SIASLVAQAEEAAAEGGKEIVLTGVNIGHF------GETTHEKFIDLVKALDKVEGIKRF 237

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R ++  P  + D LI    +    MP+ H+P+QSGSD +LK M+RR+    +   I+ I+
Sbjct: 238 RISSLEPDLIDDDLIAFCAESRAFMPHFHIPLQSGSDAVLKLMHRRYDTALFAHKIELIK 297

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM---LE 380
            + PD  I  D +VG  GE  + F      +  +   Q   F YS R GT   ++   +E
Sbjct: 298 KLMPDAFIGVDVMVGSRGEKPEYFEDCYQFLAHLPVTQLHVFPYSERPGTSALSIPYVVE 357

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK--HGK 423
           + D+ ++++RLL L      +   F    +G   EVL EK  HGK
Sbjct: 358 EKDKKLRSKRLLALSDT---KTQDFYQQFIGTEREVLFEKAPHGK 399


>gi|168180715|ref|ZP_02615379.1| RNA modification enzyme, MiaB family [Clostridium botulinum NCTC
           2916]
 gi|226949759|ref|YP_002804850.1| RNA modification enzyme, MiaB family [Clostridium botulinum A2 str.
           Kyoto]
 gi|182668451|gb|EDT80430.1| RNA modification enzyme, MiaB family [Clostridium botulinum NCTC
           2916]
 gi|226843731|gb|ACO86397.1| RNA modification enzyme, MiaB family [Clostridium botulinum A2 str.
           Kyoto]
          Length = 445

 Score =  161 bits (407), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 131/441 (29%), Positives = 222/441 (50%), Gaps = 37/441 (8%)

Query: 31  SYGCQMNVYDSLRMEDMFF--SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           S GC  N  DS   E M +  ++  E V +  +A +I++NTC   E A E+  + + ++ 
Sbjct: 10  SLGCDKNRIDS---ELMLYKLNEEAELVKNPKEAQVIIVNTCGFIETAKEESINTILQMA 66

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER-ARFGK 147
           + K +        ++VV GC+ Q    E+    P +++++G   Y +L E ++   + G+
Sbjct: 67  SYKKTH----NCKVLVVTGCLTQRYKGELKELIPEMDIMLGVNDYDKLLESIKVFLKSGE 122

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNR---KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
           +      S   K+    I +G  NR       TA++ I EGC+ FCT+C +P  RG   S
Sbjct: 123 K------SFYHKYSDTKINEG--NRILTTPTYTAYVRIAEGCNNFCTYCAIPRIRGKYRS 174

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R    ++ E   L   GV EI L+ Q+   + G  + G+K    +LL  +S+++G+  +R
Sbjct: 175 RKKENILKEVENLAKQGVKEIILIAQDTTMY-GIDIYGKK-VLHELLRDISKVEGVKWIR 232

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
               +P +++  LI+   + D +  YL LP+Q  S+ +LK M R+ T      II ++R 
Sbjct: 233 LLYCYPEEITKELIEEIKNNDKVCKYLDLPIQQISNSVLKRMGRKTTKETIINIIKKLRK 292

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD- 383
               I + +  IVGFPGET+ +F    + V  +   +   FKYS   GT  + M EQ+D 
Sbjct: 293 EIEGITLRTSLIVGFPGETEGEFSELKEFVSDVKLDKLGVFKYSKEEGTSAALMKEQIDE 352

Query: 384 --ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQS 437
             +  + E ++ LQ+ + +     N   +G+I EV++E  G ++    GR    SP +  
Sbjct: 353 EIKEKREEEIMILQQSISK---DINKEKIGKIYEVIVE--GTKEDMYYGRNYEMSPEIDG 407

Query: 438 VVLNSKNHN--IGDIIKVRIT 456
            +   K+ N  IGDIIKV++T
Sbjct: 408 EIYFEKDENVKIGDIIKVKVT 428


>gi|14521928|ref|NP_127405.1| hypothetical protein PAB1134 [Pyrococcus abyssi GE5]
 gi|14916852|sp|Q9UXX9|Y1729_PYRAB RecName: Full=Putative methylthiotransferase PYRAB17290
 gi|5459148|emb|CAB50634.1| Hypothetical protein, UPF0004 family [Pyrococcus abyssi GE5]
          Length = 425

 Score =  161 bits (407), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 131/452 (28%), Positives = 227/452 (50%), Gaps = 39/452 (8%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + ++++YGC  N  D   M  +    G+E V   D+ +++V+N+C +++    K+     
Sbjct: 3   KIYIENYGCARNRADGEIMAALLHLAGHEIVYDPDEGEIVVVNSCAVKDPTERKIAR--- 59

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           RI+ L +S  K      V+V GC+     + I  R   V+ ++G ++  R+ + +E A  
Sbjct: 60  RIKELLDSGKK------VIVTGCLPHVNPDVIDER---VSGILGVKSIDRIIQAVEYALR 110

Query: 146 GKRVVDTDYSVEDKFER-LSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
           G++++    SV D  +R L  +D      R V   + I EGC   CT+C   + RG+  S
Sbjct: 111 GEKLI----SVPDWRKRNLDKLDFPRLSPRTVYFIVPIAEGCLNACTYCATRFARGVLKS 166

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
            S  ++V   +  I  G  EI L  ++   +   G D      + LL  ++ I+G  R+R
Sbjct: 167 YSPEKIVGWVKWAIKQGYKEIWLSAEDTGCY---GFD-IGTNLAKLLDEITAIEGEFRVR 222

Query: 265 YTTSHPRDMS---DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
               +P  +    D LI+A+ D + +  +LHLPVQSG + IL+ M R +T  E+ +I+  
Sbjct: 223 VGMMNPNHVLKFLDELIEAYQD-EKIYKFLHLPVQSGDNDILRRMGRNYTVEEFEEIVKE 281

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
            R   PD+ + +D IVGFPGE D+ F+ +++L+ +I   +    +YSPR GT  +   +Q
Sbjct: 282 FRKKFPDLNLHTDIIVGFPGEDDEAFQRSVELIRRIRPDKVNVSRYSPRPGTIAAKW-KQ 340

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           +   +  ER   L +   +     N   +G+ +EVLI   GK KG        + +V +N
Sbjct: 341 LPGWIVKERSRLLHRIRLQISYEINQKYIGKKVEVLIHGEGK-KGN-------VDAVTMN 392

Query: 442 SKN--HNIGDIIKVRITDVKIST---LYGELV 468
            K+     G+  + RI ++K +T   L GE++
Sbjct: 393 YKHVILPFGNSGEFRIAEIKNATSTYLLGEVM 424


>gi|167764860|ref|ZP_02436981.1| hypothetical protein BACSTE_03252 [Bacteroides stercoris ATCC
           43183]
 gi|167697529|gb|EDS14108.1| hypothetical protein BACSTE_03252 [Bacteroides stercoris ATCC
           43183]
          Length = 440

 Score =  161 bits (407), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 121/427 (28%), Positives = 204/427 (47%), Gaps = 17/427 (3%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N  ++  +  +    G   V   + AD+ V+NTC + E A +K    + R+   
Sbjct: 16  TLGCKLNFSETSTIGKVLREAGVRTVRKGEKADICVVNTCSVTEVADKKCRQAIHRL--- 72

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               +K+     VVV GC AQ + + + +    V+VV+G +    L + L   R  +   
Sbjct: 73  ----VKQHPGAFVVVTGCYAQLKPDAVAKIEG-VDVVLGAEQKKDLLQYLGDLRKHESGE 127

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
               +++D    +       +R      FL +Q+GCD +C++C +P+ RG   + S++ +
Sbjct: 128 AHTSALKD----IRSFAPSCSRGDRTRFFLKVQDGCDYYCSYCTIPFARGRSRNGSIASL 183

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270
           V++AR+    G  EI L G N+  + GK   GE  TF DL+ +L +++ + R R ++  P
Sbjct: 184 VEQARQAAAEGGKEIVLTGVNIGDF-GKST-GE--TFFDLVKALDDVECIERYRISSIEP 239

Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330
             ++D +I+        MP+ H+P+QSGSD +LK M RR+    +   + RI+ V PD  
Sbjct: 240 NLLTDEIIEFVSRSKRFMPHFHIPLQSGSDEVLKLMRRRYDTALFASKVKRIKEVMPDAF 299

Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER 390
           I  D IVG  GET++ F      +  +   Q   F YS R GT    +   V    K  R
Sbjct: 300 IGVDVIVGTRGETEEYFEQAYRFIQSLDVTQLHVFSYSERPGTQALKIEHVVSSEEKHRR 359

Query: 391 LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDI 450
              L     E+  +F    +GQ + VL+E+  K    + G +P    V +   +     +
Sbjct: 360 SRLLLDLSDEKTRAFYARHIGQTMPVLLER-SKPGTPMHGFTPNYIRVEVPHDDALDNQV 418

Query: 451 IKVRITD 457
           I VR+ D
Sbjct: 419 IPVRMGD 425


>gi|91215250|ref|ZP_01252222.1| putative Fe-S oxidoreductase [Psychroflexus torquis ATCC 700755]
 gi|91186855|gb|EAS73226.1| putative Fe-S oxidoreductase [Psychroflexus torquis ATCC 700755]
          Length = 440

 Score =  160 bits (406), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 134/463 (28%), Positives = 225/463 (48%), Gaps = 45/463 (9%)

Query: 20  QCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEK 79
           + I   +  V + GC  N+YDS  +     + G E V    + D++V+NTC   + A E+
Sbjct: 4   KSIKKNKINVVTLGCSKNIYDSEILMGQLKANGKE-VAHETEGDIVVINTCGFIDNAKEE 62

Query: 80  -VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPE 138
            V + L  ++  +   +K      V V GC+++    ++ +  P V+   G      LP 
Sbjct: 63  SVNTILDFVQKKEKGEVK-----KVFVTGCLSERYKPDLQKEIPDVDQYFGTT---ELPA 114

Query: 139 LLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
           LL       + +  DY  E   ER++     Y       AFL I EGCD+ C+FC +P  
Sbjct: 115 LL-------KALGADYKHELIGERITTTPKNY-------AFLKIAEGCDRPCSFCAIPLM 160

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEI 257
           RGI  S  +  +V E++ L  NGV E+ L+ Q++  +   GLD  +K   ++LL  L ++
Sbjct: 161 RGIHRSTPIEDLVKESKSLAANGVKELILIAQDLTYY---GLDLYKKRNLAELLRELVKV 217

Query: 258 KGL--VRLRYT--TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
           +G+  +RL Y   T  P D+ D + +       +  Y+ +P+Q  SD ILKSM R  T  
Sbjct: 218 EGIEWIRLHYAFPTGFPVDVLDVIREEPK----VCNYIDIPLQHISDHILKSMRRGTTHK 273

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
           +   ++ + R   P + I +  IVG+PGET++DF      V+++ + +   F YS    T
Sbjct: 274 KTTDLLIKFRKEVPLMTIRTTLIVGYPGETEEDFEELKQWVEEMRFERLGCFTYSHEENT 333

Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSP 433
              N+ + V E VK +R   + +   +     N   +G+  + +I++  KE    VGR+ 
Sbjct: 334 HAYNLEDDVPEEVKMQRANEIMEIQSQISWELNQQKIGKTFKCVIDR--KEGNYFVGRTE 391

Query: 434 W-----LQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELVV 469
           +        V+++SK H +  GD   ++IT+     LYGE V+
Sbjct: 392 YDSPDVDNEVLIDSKLHYLKTGDFAHIKITEAADFDLYGEPVL 434


>gi|21218120|dbj|BAB96555.1| putative fructokinase-like protein [Pseudomonas putida]
          Length = 536

 Score =  160 bits (406), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 130/485 (26%), Positives = 215/485 (44%), Gaps = 65/485 (13%)

Query: 18  VDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA 77
           +     P+  FV S GC   + DS ++     ++GYE   + D ADL+V+NTC   ++A 
Sbjct: 82  ISSSAAPKVGFV-SLGCPKALVDSEQIITQLRAEGYEISGTYDGADLVVVNTCGFIDEAV 140

Query: 78  EKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVA---QAEGEEILRR-SPIVNVVVGPQTY 133
           ++    +G   N       E G   V+V GC+     A G  ++    P V  V GP   
Sbjct: 141 QESLDAIGEALN-------ENGK--VIVTGCLGAKKSASGTGLIEEVHPKVLAVTGPHAT 191

Query: 134 YRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC 193
             +   +  A   K          D F  L +   G        A+L I EGC+  CTFC
Sbjct: 192 NEVMNAVH-AHLPKP--------HDPFTDL-VPAAGIKLTPRHYAYLKISEGCNHRCTFC 241

Query: 194 VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDG 242
           ++P  RG  +SR ++ V+ EA  L  +GV E+ ++ Q+ +A           W GK +  
Sbjct: 242 IIPSMRGDLVSRPVADVMLEAENLFKSGVKELLVISQDTSAYGVDVKYRTGFWNGKPV-- 299

Query: 243 EKCTFSDLLYSLSEIKG----LVRLRYTTSHPR------DMSDCLIKAHGDLDVLMPYLH 292
            K   +DL+ +L E+       VRL Y   +P        M++  +K H     ++PYL 
Sbjct: 300 -KTRMTDLVGALGELAAQYGAWVRLHYVYPYPSVDEVIPMMAEGALKGH-----VLPYLD 353

Query: 293 LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352
           +P Q     +LK M R   A +  + +   R + PD+ I S FI GFPGET++ F   +D
Sbjct: 354 VPFQHAHPEVLKRMKRPANAEKVLERVQAWRKICPDLTIRSTFIAGFPGETEEQFETLLD 413

Query: 353 LVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQ 412
            +      +   F YSP  G   + +   + + V+ ER     +   E   +     +G+
Sbjct: 414 FIRVADLDRVGCFAYSPVEGASANELDGALPDEVREERRARFMELAEELSAARMKRKIGK 473

Query: 413 IIEVLIEKHGKEKGKLVGRSP----------WLQSVVLNSKNHNIGDIIKVRITDVKIST 462
            ++VL+++   + G  +GR+           ++   V  S+ +  GD + V+I+      
Sbjct: 474 TLKVLVDEVNADGG--IGRTAADAPEIDGVVYIAPAVKASRRYKAGDFVSVKISGADGHD 531

Query: 463 LYGEL 467
           L+GE+
Sbjct: 532 LWGEV 536


>gi|260885593|ref|ZP_05735307.2| 2-methylthioadenine synthetase [Prevotella tannerae ATCC 51259]
 gi|260851662|gb|EEX71531.1| 2-methylthioadenine synthetase [Prevotella tannerae ATCC 51259]
          Length = 524

 Score =  160 bits (406), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 119/420 (28%), Positives = 203/420 (48%), Gaps = 25/420 (5%)

Query: 19  DQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAE 78
           D  +  ++   ++ GC++N  ++  + D     G   V + + AD+ ++NTC + + A  
Sbjct: 85  DSLLAGKKAAFQTLGCKLNFAETSSLRDTLARYGVSPVEAGETADICIVNTCSVTDVADH 144

Query: 79  KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPE 138
           K    + R+        +E  D  VVV GC AQ + E+I R  P V++V+G +    +  
Sbjct: 145 KCRQAIHRL-------TREHPDAFVVVLGCYAQLQPEKIAR-FPGVDLVIGMEQKGDVVR 196

Query: 139 LLERARFGKRVVDTDYSVEDKFERLSIVD-----GGYNRKRGVTAFLTIQEGCDKFCTFC 193
            +      ++ ++   ++      L   D        ++      FL +Q+GC+ +CT+C
Sbjct: 197 YIREGLAQRQALEKGENIHAAIA-LPTRDVRTFVPSCSKGDRTRYFLKVQDGCNYYCTYC 255

Query: 194 VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS 253
            +P  RG   + +++ +V +A  +   G  EI L G N   + G+   GE  TF  L+ +
Sbjct: 256 TIPLARGRSRNGTIASLVGQAEAVAAEGGKEIVLTGVNTGDF-GRST-GE--TFFQLIQA 311

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
           L  +KG+ R R ++  P  ++D +I         MP+ H+P+QSGSD +L+ M RR+   
Sbjct: 312 LDRVKGIERYRISSIEPNLLTDEIIDFCAQSRAFMPHFHIPLQSGSDDVLRLMRRRYDTE 371

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
            +R+ I+++R+  PD  I  D IVG  GETD  F      ++ I  ++   F YS R GT
Sbjct: 372 LFRRKIEKVRAAIPDAFIGVDVIVGTRGETDAFFEDAYKFIEDIDISRLHVFSYSERPGT 431

Query: 374 PGSNMLEQVDENVK---AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG 430
               +   VD   K   ++RLL L +   E++ +F    +G    VL E H KE   L G
Sbjct: 432 QALQIPHVVDAQTKQARSKRLLALSE---EKRKAFFRRFIGTERPVLWE-HSKEGRPLHG 487


>gi|148251981|ref|YP_001236566.1| putative MiaB-like tRNA modifying enzyme [Bradyrhizobium sp. BTAi1]
 gi|146404154|gb|ABQ32660.1| putative MiaB-like tRNA modifying enzyme [Bradyrhizobium sp. BTAi1]
          Length = 434

 Score =  160 bits (406), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 123/370 (33%), Positives = 183/370 (49%), Gaps = 35/370 (9%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V ++GC++N ++S  +     + G         +D IV+N+C +  +A  +       IR
Sbjct: 5   VVTFGCRLNAFESELIARHAEAAGA--------SDTIVINSCAVTNEAVAQARQT---IR 53

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL------PELLER 142
            LK  R        +VV GC AQ +   +    P V+ V+G +   +L       + L  
Sbjct: 54  KLKRERPAA----RIVVTGCAAQTQAG-MFADMPEVDRVMGNEDKLQLDAWRATAQALAP 108

Query: 143 ARFG-----KRVVDTDYSVEDKFERLSIVDGGYNRKRGVT-AFLTIQEGCDKFCTFCVVP 196
            RFG     K  V    +V +    L  V+G    +RG+   F+ +Q GCD  CTFC++P
Sbjct: 109 PRFGIDTSEKVAVSDIMAVTEMAPHL--VEG---FQRGLPRVFVQVQNGCDHRCTFCIIP 163

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256
           + RG   S  +  VVD+ R L   G  EI L G ++ ++ G  L G       +   L  
Sbjct: 164 FGRGNSRSVPMGAVVDQVRALAARGHAEIVLTGVDLTSY-GHDLPGTPKLGRLVKQILRH 222

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           +  L RLR ++    +    L+ A  D   LMP+LHL +Q+G D ILK M RRH+  +  
Sbjct: 223 VPELQRLRISSIDSIEADADLLDALADDARLMPHLHLSLQAGDDLILKRMKRRHSRADAV 282

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
              D +R +RPDIA+ +D I GFP ET+D F  +++LV++ G A    F YSPR GTP +
Sbjct: 283 AFCDHVRLLRPDIALGADLIAGFPTETEDMFVRSLELVEECGLAFLHVFPYSPRPGTPAA 342

Query: 377 NMLEQVDENV 386
            M  QVD  V
Sbjct: 343 RM-PQVDGAV 351


>gi|163755928|ref|ZP_02163045.1| 2-methylthioadenine synthetase [Kordia algicida OT-1]
 gi|161324099|gb|EDP95431.1| 2-methylthioadenine synthetase [Kordia algicida OT-1]
          Length = 435

 Score =  160 bits (406), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 126/450 (28%), Positives = 220/450 (48%), Gaps = 37/450 (8%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC-HIREKAAEKVYSFLGRI 87
           V + GC  NVYDS  +     + G E V   ++ +++V+NTC  I     E V + L  +
Sbjct: 13  VVTLGCSKNVYDSEVLMGQLKANGKE-VAHEEEGNIVVINTCGFINNAKEESVNTILDYV 71

Query: 88  RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147
                ++ +EG    V V GC+++    ++    P V+   G      LP LL       
Sbjct: 72  -----NKKEEGVVDKVFVTGCLSERYKPDLEAEIPDVDQYFGTSD---LPRLL------- 116

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
           + +  DY  E   ER++     Y       A+L I EGCD+ C+FC +P  RG   S+ +
Sbjct: 117 KALGADYKHELIGERITTTPKNY-------AYLKIAEGCDRPCSFCAIPLMRGKHKSKPI 169

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYT 266
            ++V+E  KL   GV E+ L+ Q++  +   GLD  +K   ++LL +L +++G+  +R  
Sbjct: 170 EELVEETEKLAAKGVKELILIAQDLTYY---GLDLYKKRNLAELLQNLVKVEGIEWIRLH 226

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
            + P      +++   +   +  YL +P+Q  +D ILKSM R     +  +++   R+  
Sbjct: 227 YAFPAGFPMDVLEVMNNEPKICNYLDIPLQHIADDILKSMRRGTNQAKTTKLLKEFRAAV 286

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           P++ I +  IVG+PGET++ F+   + V ++ + +   F YS    T   N+ + V E V
Sbjct: 287 PNMTIRTTLIVGYPGETEEHFQTLKNWVQEMRFERLGCFTYSHEENTHAYNLEDDVPEEV 346

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQS-VVLN 441
           K +R   + +   +     N   +GQ  + +I++  KE    VGR    SP + + V+++
Sbjct: 347 KQDRANQIMEIQSQISWELNQEKIGQTFKCIIDR--KEGNYFVGRTEFDSPDVDNEVLID 404

Query: 442 SKNHNI--GDIIKVRITDVKISTLYGELVV 469
           +    +  G+ + V+ITD     LYGE  V
Sbjct: 405 AAKFYVKQGEFVDVKITDAADFDLYGEPAV 434


>gi|14917063|sp|O59545|Y1875_PYRHO RecName: Full=Putative methylthiotransferase PH1875
          Length = 425

 Score =  160 bits (406), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 124/447 (27%), Positives = 224/447 (50%), Gaps = 29/447 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + ++++YGC  N  D   M  + +  G+E V S ++++++V+N+C +++    K+     
Sbjct: 3   KVYIENYGCARNRADGEIMAALLYLSGHEIVESPEESEIVVVNSCAVKDPTERKIAR--- 59

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           RIR L ++  K      V+V GC+     + I  R   V+ ++G ++  R+ + +E A  
Sbjct: 60  RIRELLDNGKK------VIVTGCLPHVNPDVIDER---VSAILGVKSIDRIVQAVEYAMR 110

Query: 146 GKRVVDTDYSVEDKFER-LSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
           G++++    SV D  +R L  +D      R V   L I EGC   CT+C     RG+  S
Sbjct: 111 GEKLI----SVPDWKKRNLDKLDFPRLSPRNVYFILPIAEGCLNACTYCATRLARGVLKS 166

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
            S  +++   +  I  G  EI L  ++   +   G D      + L+  ++ I+G  R+R
Sbjct: 167 YSPEKIIGWVKWAIKQGYKEIWLSAEDTGCY---GFDI-GTNLAKLIDEITAIEGEFRIR 222

Query: 265 YTTSHPRDMS---DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
               +P  +    D LI A+ D  V   +LHLPVQSG + IL+ M R +T  E+ +I+  
Sbjct: 223 VGMMNPNHVLKFLDELIDAYKDEKVYK-FLHLPVQSGDNEILRKMGRMYTVEEFEEIVKA 281

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
            R   P++ + +D IVGFPGE+++ F+ +++L+ +I   +    +YSPR GT  +   +Q
Sbjct: 282 FRREFPELNLHTDIIVGFPGESEEAFQRSVELIKRIRPDKVNVSRYSPRPGTIAAKW-KQ 340

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           +   V  ER   L +   +     N   +G+ ++VLI   GK KG +   +   + ++L 
Sbjct: 341 LPGWVVKERSRLLHRIRLQISYEINRKYIGKKVKVLIHGEGK-KGNVDAVTMNYKHIILP 399

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                 G+  + R+ +   + L GE++
Sbjct: 400 EGRK--GEFREARVKNAASTYLLGEII 424


>gi|319407864|emb|CBI81517.1| conserved hypothetical protein [Bartonella sp. 1-1C]
          Length = 427

 Score =  160 bits (406), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 116/372 (31%), Positives = 182/372 (48%), Gaps = 33/372 (8%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           ++GC++N Y+S  +     S G   +        I+ NTC +    AE V      IR  
Sbjct: 7   TFGCRLNSYESEIIRKESTSAGLNELK----GGAIIFNTCAV---TAEAVRQAKQAIRKA 59

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEI-LRRSPIVNVVVG------PQTYYRLPELLERA 143
           K    ++     ++V GC AQ E +   L +   V++++G        +Y +LP+     
Sbjct: 60  K----RKNPHARIIVTGCAAQTEAKNFSLMKE--VDLILGNEEKLHAHSYRQLPD----- 108

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT-AFLTIQEGCDKFCTFCVVPYTRGIE 202
            FG    D    V D  E   I     N   G T AF+ +Q GCD  CTFC++PY+RG  
Sbjct: 109 -FGINH-DEKLRVNDIMEVHKIAPHMINALEGRTRAFVQVQNGCDHRCTFCIIPYSRGRS 166

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS-LSEIKGLV 261
            S  +  ++++ ++LI NG+ EI L G ++ ++ G  L G K T   L+ + L  +  L 
Sbjct: 167 RSVPMGIIIEQIKQLIGNGIQEIVLTGVDLTSY-GPDLPG-KITLGKLVSTILHHVPDLP 224

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           RLR ++    +    LI        +MP+LHL +Q+G + ILK M RRH      Q    
Sbjct: 225 RLRLSSIDSIEADQELINLLAYEKRIMPHLHLSLQAGDNMILKRMKRRHMRENAIQFCQD 284

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R+ RP I   +D I GFP ET++ F+ ++ L+ + G      F +SPR GTP + M + 
Sbjct: 285 LRAKRPTIVYGADLIAGFPTETEEMFQNSLALIHECGLTHLHVFPFSPREGTPAARMPQI 344

Query: 382 VDE--NVKAERL 391
             E   ++AE+L
Sbjct: 345 SREIIKIRAEKL 356


>gi|41055309|ref|NP_956921.1| CDK5 regulatory subunit-associated protein 1-like 1 [Danio rerio]
 gi|82187245|sp|Q6PG34|CDKAL_DANRE RecName: Full=CDK5 regulatory subunit-associated protein 1-like 1
 gi|34784048|gb|AAH57248.1| CDK5 regulatory subunit associated protein 1-like 1 [Danio rerio]
          Length = 547

 Score =  160 bits (406), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 128/456 (28%), Positives = 218/456 (47%), Gaps = 45/456 (9%)

Query: 16  QIVDQCIVP--QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIR 73
           Q+    ++P  Q+ ++K++GC  N  D   M       GY+      DADL +LN+C ++
Sbjct: 48  QMQTDSVIPGMQKVWLKTWGCSHNSSDGEYMAGQLAVAGYQITEDSSDADLWLLNSCTVK 107

Query: 74  EKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNV-VVGPQT 132
             A +    F   IR  +    K      VV+AGCV QA+     R   I ++ ++G Q 
Sbjct: 108 SPAEDH---FRNAIRKAQEQNKK------VVLAGCVPQAQP----RMDYIKDLSIIGVQQ 154

Query: 133 YYRLPELLERARFGKRVVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDKFC 190
             R+ E+++ A  G  V       E K +RL  + +D    RK  +   ++I  GC   C
Sbjct: 155 IDRVVEVVDEAIKGHSVRLLGQKKE-KGKRLGGARLDLPKIRKNPLIEIISINTGCLNAC 213

Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-RGKGLDGEKCTFSD 249
           T+C   + RG   S  + ++V+  R+    GVCEI L  ++  A+ R  G D        
Sbjct: 214 TYCKTKHARGDLASYPVEELVERVRQSFQEGVCEIWLTSEDTGAYGRDIGSD-----LPT 268

Query: 250 LLYSL-SEIK-------GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
           LL+ L  EI        G+    Y   H  +MS  L         +  +LH+P+QS SD 
Sbjct: 269 LLWRLVEEIPEGAMLRLGMTNPPYILEHLEEMSRILQHPR-----VFSFLHVPLQSASDS 323

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
           +L  M R +   ++  ++D ++   P I I++D I GFPGETD+DF  T+ LV +  +  
Sbjct: 324 VLMEMRREYCCADFTHLVDYLKERVPGITIATDIICGFPGETDEDFEQTLALVRRYRFPS 383

Query: 362 AFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFN--DACVGQIIEVLIE 419
            F  ++ PR GTP + +++Q+  +VK +R     K+L     S+   D  +G+  +VL+ 
Sbjct: 384 LFINQFYPRPGTPAA-LMQQLPAHVKKQRT----KELSALFHSYRPYDHKMGEQQQVLVT 438

Query: 420 KHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRI 455
           +   +    V  + + + V++  +   +G +++V +
Sbjct: 439 EESFDSQYYVAHNKFYEQVLVPKRPEYLGKMVQVEV 474


>gi|168187897|ref|ZP_02622532.1| conserved hypothetical protein [Clostridium botulinum C str.
           Eklund]
 gi|169294251|gb|EDS76384.1| conserved hypothetical protein [Clostridium botulinum C str.
           Eklund]
          Length = 444

 Score =  160 bits (406), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 126/439 (28%), Positives = 222/439 (50%), Gaps = 30/439 (6%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N  DS  +     S+  + VN  + AD+I++NTC   E + ++    +     L
Sbjct: 10  SLGCDKNRIDSELLLGKL-SEKNDIVNDPNKADIIIVNTCGFIESSKQESIDTI-----L 63

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
           + ++ KE    +++  GC+ Q   + +    P +++++G   Y  +   +E         
Sbjct: 64  EMAKYKEKKCKMIIATGCLTQRYSKNLQELIPEIDIMLGVNDYANIQNYIEDF-----FS 118

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVT-----AFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           + +   E K+  +SI +G    KR +T     A++ I EGCD  CT+C++P  RG   SR
Sbjct: 119 ENNRICECKYSDISINEG----KRILTTAKHMAYIRISEGCDNLCTYCIIPKIRGKYRSR 174

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           SL  +++EA++L + GV E+ L+GQ+  A  G  L  E+   S LL  LS I+ +  +R 
Sbjct: 175 SLESIINEAKELANMGVKELILVGQDT-AIYGSDL-YEENKLSTLLKELSNIEDIEWIRV 232

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
             ++P +++D LI+   + D +  YL +P+Q  S+ +LK MNR+ +       I ++R  
Sbjct: 233 LYTYPEEITDELIEEIKNNDKVCKYLDIPIQHISNTVLKRMNRKSSKELITNNIKKMREE 292

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
              + + +  IVGFPGET+++F    + +  I +     FKYS    T  + M  Q++E 
Sbjct: 293 IKGLCLRTSIIVGFPGETEEEFNELEEFIKDIEFNNLGVFKYSQEEDTAAARMKGQINEK 352

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVL- 440
           +K +RL  +    ++     N   +G++ +VL+E  G+     VGR+    P +   +  
Sbjct: 353 IKDKRLETIMSIQQKVSSKINKNKLGKMYKVLVE--GQNDKYYVGRNYQMVPEIDGAIFF 410

Query: 441 -NSKNHNIGDIIKVRITDV 458
              K  NIG+ + V+ITD 
Sbjct: 411 KCDKILNIGEFVYVKITDT 429


>gi|53715140|ref|YP_101132.1| putative Fe-S oxidoreductase [Bacteroides fragilis YCH46]
 gi|52218005|dbj|BAD50598.1| putative Fe-S oxidoreductase [Bacteroides fragilis YCH46]
          Length = 439

 Score =  160 bits (406), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 114/393 (29%), Positives = 195/393 (49%), Gaps = 22/393 (5%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N  ++  +  +    G       + ADL ++NTC + E A +K    + R+   
Sbjct: 16  TLGCKLNFSETSTIGKILREAGVRTARKGEKADLCIVNTCSVTEMADKKCRQAIHRL--- 72

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               +K+     VVV GC AQ +  ++ +    V+VV+G +    L + L      K   
Sbjct: 73  ----VKQHPGAFVVVTGCYAQLKPGDVAKIEG-VDVVLGAEQKKDLLQYL--GDLHKHEG 125

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
              Y+   K   +       +R      FL +Q+GCD FC++C +P+ RG   + +++ +
Sbjct: 126 GEAYTTATK--DIRSFAPSCSRGDRTRFFLKVQDGCDYFCSYCTIPFARGRSRNGTIASL 183

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270
           V++AR+    G  EI L G N+  + GK   GE  TF DL+ +L  ++G+ R R ++  P
Sbjct: 184 VEQARQAAAEGGKEIVLTGVNIGDF-GKST-GE--TFFDLVKALDRVEGIERYRISSIEP 239

Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330
             ++D +I+        MP+ H+P+QSGSD +L+ M RR+    +   I +I+ V PD+ 
Sbjct: 240 NLLTDEIIEYVSRSRSFMPHFHIPLQSGSDEVLQLMRRRYGTELFASKIAKIKEVMPDVF 299

Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG---SNMLEQVDENVK 387
           I  D IVG  GET   F    + +  +   Q   F YS R GT      +++   +++ +
Sbjct: 300 IGVDVIVGTRGETAGYFEKAYEFIHGLDVTQLHVFSYSERPGTQALKIDHVVTPEEKHQR 359

Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
           ++RLL L     E+  +F    +GQ + VL+EK
Sbjct: 360 SQRLLALSD---EKTKAFYARYIGQTMPVLMEK 389


>gi|14591622|ref|NP_143704.1| hypothetical protein PH1875 [Pyrococcus horikoshii OT3]
 gi|3258314|dbj|BAA30997.1| 432aa long hypothetical protein [Pyrococcus horikoshii OT3]
          Length = 432

 Score =  160 bits (406), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 124/447 (27%), Positives = 224/447 (50%), Gaps = 29/447 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + ++++YGC  N  D   M  + +  G+E V S ++++++V+N+C +++    K+     
Sbjct: 10  KVYIENYGCARNRADGEIMAALLYLSGHEIVESPEESEIVVVNSCAVKDPTERKIAR--- 66

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           RIR L ++  K      V+V GC+     + I  R   V+ ++G ++  R+ + +E A  
Sbjct: 67  RIRELLDNGKK------VIVTGCLPHVNPDVIDER---VSAILGVKSIDRIVQAVEYAMR 117

Query: 146 GKRVVDTDYSVEDKFER-LSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
           G++++    SV D  +R L  +D      R V   L I EGC   CT+C     RG+  S
Sbjct: 118 GEKLI----SVPDWKKRNLDKLDFPRLSPRNVYFILPIAEGCLNACTYCATRLARGVLKS 173

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
            S  +++   +  I  G  EI L  ++   +   G D      + L+  ++ I+G  R+R
Sbjct: 174 YSPEKIIGWVKWAIKQGYKEIWLSAEDTGCY---GFDI-GTNLAKLIDEITAIEGEFRIR 229

Query: 265 YTTSHPRDMS---DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
               +P  +    D LI A+ D  V   +LHLPVQSG + IL+ M R +T  E+ +I+  
Sbjct: 230 VGMMNPNHVLKFLDELIDAYKDEKVYK-FLHLPVQSGDNEILRKMGRMYTVEEFEEIVKA 288

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
            R   P++ + +D IVGFPGE+++ F+ +++L+ +I   +    +YSPR GT  +   +Q
Sbjct: 289 FRREFPELNLHTDIIVGFPGESEEAFQRSVELIKRIRPDKVNVSRYSPRPGTIAAKW-KQ 347

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           +   V  ER   L +   +     N   +G+ ++VLI   GK KG +   +   + ++L 
Sbjct: 348 LPGWVVKERSRLLHRIRLQISYEINRKYIGKKVKVLIHGEGK-KGNVDAVTMNYKHIILP 406

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                 G+  + R+ +   + L GE++
Sbjct: 407 EGRK--GEFREARVKNAASTYLLGEII 431


>gi|87198868|ref|YP_496125.1| hypothetical protein Saro_0846 [Novosphingobium aromaticivorans DSM
           12444]
 gi|123736270|sp|Q2GA32|RIMO_NOVAD RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|87134549|gb|ABD25291.1| SSU ribosomal protein S12P methylthiotransferase [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 471

 Score =  160 bits (406), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 136/491 (27%), Positives = 221/491 (45%), Gaps = 60/491 (12%)

Query: 8   IGVAHMVSQIVDQCI--VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLI 65
           +G A M SQI  + I   P+   V S GC   + DS R+     + GY        AD++
Sbjct: 1   MGRAKMASQIPPREIPEAPKVGMV-SLGCPKALVDSERILTRLRADGYAMSADYAGADVV 59

Query: 66  VLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVN 125
           ++NTC   + A E+  S +G         I E G   V+V GC+   E E I  + P V 
Sbjct: 60  LVNTCGFLDSAKEESLSAIGEA-------IAENGR--VIVTGCMGN-EAEAIRAKFPQVL 109

Query: 126 VVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEG 185
            V G   Y  + E +  A         D   +     + +    Y+       +L I EG
Sbjct: 110 AVTGAHQYEAVVEAVHEAAPPSMGPYIDLIPQADPGDVKLTPRHYS-------YLKISEG 162

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA----------- 234
           C+  C FC++P  RG   SR +  V+ EA KL+  G  E+ ++ Q+ +A           
Sbjct: 163 CNHACAFCIIPSLRGKLASRRIDAVLREAEKLVAAGTKELLVISQDTSAYGVDVRHEERM 222

Query: 235 WRGKGLDGEKCTFSDLLYSLSEIK------GLVRLRYTTSHPRDMSDCLIKAHGDLDVLM 288
           W+G+ +   +   +DL   L +++        VRL Y   +P   +   + A G   ++ 
Sbjct: 223 WKGRPV---RTHMTDLARELGQLRTPQGETPWVRLHYVYPYPHVDAVIPLMAEG---LVT 276

Query: 289 PYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFR 348
           PYL +P Q  S  +L++M R     +  + I   R + PD+AI S F+VGFPGET  DF 
Sbjct: 277 PYLDIPFQHASPNVLRAMKRPANEAKVLERIKAWREICPDLAIRSSFVVGFPGETQADFE 336

Query: 349 ATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDA 408
             ++ +++    +   F++ P  G   +++ +QV E +K ER   L +K      +   A
Sbjct: 337 YLLEWLEEAQLDRVGGFRFEPVAGAAANDLPDQVPEEIKEERYARLMEKTEAISAARLSA 396

Query: 409 CVGQIIEVLIEKHGK--EKGKL--VGRSP----------WLQSVVLNSKNHNIGDIIKVR 454
            VG+ I+V++++ G+  E G +    RS           +L++V  + K    GD  +V 
Sbjct: 397 KVGRHIKVIVDEVGEPDEDGDIGATARSQADAPEIDGAVYLRNVPASLKP---GDFAEVL 453

Query: 455 ITDVKISTLYG 465
           + D     LYG
Sbjct: 454 VEDADAHDLYG 464


>gi|148700454|gb|EDL32401.1| CDK5 regulatory subunit associated protein 1-like 1, isoform CRA_a
           [Mus musculus]
          Length = 444

 Score =  160 bits (406), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 111/377 (29%), Positives = 184/377 (48%), Gaps = 35/377 (9%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           Q+ +++++GC  N  D   M     + GY+   +  DADL +LN+C ++  A +    F 
Sbjct: 63  QKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAED---HFR 119

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             I+  +    K      VV+AGCV QA+  +   +      ++G Q   R+ E++E   
Sbjct: 120 NSIKKAQEENKK------VVLAGCVPQAQPRQDYLKG---LSIIGVQQIDRVVEVVEETI 170

Query: 145 FGKRVVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            G  V       +D  +RL  + +D    RK  +   ++I  GC   CT+C   + RG  
Sbjct: 171 KGHSVRLLGQK-KDNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNL 229

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-RGKGLDGEKCTFSDLLYSLSEI---- 257
            S  + ++V+ A++    GVCEI L  ++  A+ R  G D        LL+ L E+    
Sbjct: 230 ASYPIDELVERAKQSFQEGVCEIWLTSEDTGAYGRDIGTD-----LPTLLWKLVEVIPEG 284

Query: 258 ----KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
                G+    Y   H  +M+  L         +  +LH+PVQS SD +L  M R +   
Sbjct: 285 AMLRLGMTNPPYILEHLEEMAKILNHPR-----VYAFLHIPVQSASDSVLMDMKREYCVA 339

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
           ++++++D ++   P I I++D I GFPGETD DF+ T+ LV++  +   F  ++ PR GT
Sbjct: 340 DFKRVVDFLKEKVPGITIATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGT 399

Query: 374 PGSNMLEQVDENVKAER 390
           P +   EQV  +VK +R
Sbjct: 400 PAAKA-EQVPAHVKKQR 415


>gi|295100395|emb|CBK97940.1| MiaB-like tRNA modifying enzyme [Faecalibacterium prausnitzii L2-6]
          Length = 431

 Score =  160 bits (406), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 120/445 (26%), Positives = 221/445 (49%), Gaps = 27/445 (6%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N+ ++  +E MF S G+  V   ++AD+ V+N+C +     +K   +L R +  
Sbjct: 7   TLGCKVNLNETGALEQMFRSAGFTIVPEGEEADVFVVNSCTVTNFGDQKSRKWLRRAK-- 64

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
                +E    + V+ GC  QA  EE  +      V         L  +L+     +R+V
Sbjct: 65  -----RENPGAVTVLTGCYPQAFPEEAAQFMEADLVCGNGDRKAILDNVLKLLDGHERIV 119

Query: 151 D-TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209
               ++  ++FE L +     + +    AF+ +++GC++ C +CV+P  RG   SRS   
Sbjct: 120 AIAPHAKGERFEELPVERFETHTR----AFIKVEDGCNRQCAYCVIPRARGPVRSRSEES 175

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSH 269
           ++ E R+L  +G  E+ L   ++ ++   GLD       +L+   + ++G+ R+R  +  
Sbjct: 176 ILAELRQLAASGYREVVLSAISLPSY---GLD-TGTNLVELVEKCARVEGIERIRLGSLD 231

Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD- 328
           P  ++   I     +D L P  HL +QSG    L+ M R +TA +Y +++ ++R+   D 
Sbjct: 232 PDMLTPESITRLAAVDKLCPQYHLSLQSGCSATLRRMRRVYTAEQYAEVVRQLRAAYGDR 291

Query: 329 -IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
            ++ ++D I GFPGET++DFR +   + +IG+ +   F YS R GTP  +  +QV E  K
Sbjct: 292 PVSFTTDCICGFPGETEEDFRESCAFLKEIGFLKVHVFPYSRRSGTPAYDFPDQVHEREK 351

Query: 388 AER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL-VGRSPWLQSVVLNSK 443
             R   +  + + +R + ++    C G   +VL+E      G L  G +     VV+++ 
Sbjct: 352 QARSREMNAIAEDIRREVLA---GCEGSEDDVLLET--PLSGTLFTGYTRLYVPVVVSAP 406

Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468
            H  G+I+ VR+       +  E+V
Sbjct: 407 GHKSGEIVHVRLGSYDGERVRAEMV 431


>gi|299140825|ref|ZP_07033963.1| 2-methylthioadenine synthetase [Prevotella oris C735]
 gi|298577791|gb|EFI49659.1| 2-methylthioadenine synthetase [Prevotella oris C735]
          Length = 433

 Score =  160 bits (406), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 123/452 (27%), Positives = 213/452 (47%), Gaps = 43/452 (9%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEKVYSFLGRIR 88
           + GC  N+ DS  +   F + GY  V+     D ++ V+NTC   E A E+  + +    
Sbjct: 10  TMGCSKNLVDSEHLMKQFEANGYHCVHDSKRPDGEIAVINTCGFIESAKEESINTILEFV 69

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF--- 145
           + KN    EG    + V GC++Q   +E+ +  P V+   G   Y +L   L +A     
Sbjct: 70  HAKN----EGRLKRLYVMGCLSQRYKDELEKEIPEVDKFYGKFNYKQLLTDLGKAEVPSC 125

Query: 146 -GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G+R + T                         A++ I EGCD+ C +C +P   G  +S
Sbjct: 126 NGRRHLTTPRHY---------------------AYVKIAEGCDRHCAYCAIPLITGKHVS 164

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R    ++ E R+L+++GV E  ++ Q +  + G  +DG++   +DL+  +++IKG+  +R
Sbjct: 165 RPKEDILQEVRELVNDGVKEFQIIAQELTYY-GVDIDGQR-HIADLISDMADIKGVKWIR 222

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
              ++P      L+    +   +  YL + +Q  S+ +L +M+R  +  E  ++I +IR 
Sbjct: 223 LHYAYPNQFPLELLDVIREKPNVCKYLDIALQHISNHMLNAMHRHVSKEETIELIKKIRE 282

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE-QVD 383
             P I I +  +VGFPGET++DF   ++ V    + +  +F YS   GT  +N  E  V 
Sbjct: 283 AVPGIHIRTTLLVGFPGETEEDFNELVEFVKWAKFERMGAFAYSEEEGTYSANHYEDDVT 342

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV---- 439
             VK  RL  L    +E         VG++++V+I++  KE    +GR+ +  S V    
Sbjct: 343 PEVKQHRLDTLMAVQQEISADVEAEKVGKVMKVIIDR--KEGDYYIGRTEFCSSEVDPEV 400

Query: 440 ---LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                     +G+   V+ITD +   LYG +V
Sbjct: 401 LIPAAGVRLRVGNFYDVKITDSEEFDLYGHVV 432


>gi|153940621|ref|YP_001391704.1| RNA modification protein [Clostridium botulinum F str. Langeland]
 gi|238065366|sp|A7GFZ4|RIMO_CLOBL RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|152936517|gb|ABS42015.1| RNA modification enzyme, MiaB family [Clostridium botulinum F str.
           Langeland]
 gi|295319732|gb|ADG00110.1| RNA modification enzyme, MiaB family [Clostridium botulinum F str.
           230613]
          Length = 445

 Score =  160 bits (406), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 131/441 (29%), Positives = 222/441 (50%), Gaps = 37/441 (8%)

Query: 31  SYGCQMNVYDSLRMEDMFF--SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           S GC  N  DS   E M +  ++  E V +  +A +I++NTC   E A E+  + + ++ 
Sbjct: 10  SLGCDKNRIDS---ELMLYKLNEEAELVKNPKEAQVIIVNTCGFIETAKEESINTILQMA 66

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER-ARFGK 147
           + K +        ++VV GC+ Q    E+    P +++++G   Y +L E ++   + G+
Sbjct: 67  SYKKTH----NCKVLVVTGCLTQRYKGELKELIPEMDIMLGVNDYDKLLESIKVFLKSGE 122

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNR---KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
           +      S   K+    I +G  NR       TA++ I EGC+ FCT+C +P  RG   S
Sbjct: 123 K------SFYHKYSDTKINEG--NRILTTPTYTAYVRIAEGCNNFCTYCAIPRIRGKYRS 174

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R    ++ E   L   GV EI L+ Q+   + G  + G+K    +LL  +S+++G+  +R
Sbjct: 175 RKKENILKEVENLAKQGVKEIILIAQDTTMY-GIDIYGKK-VLHELLRDISKVEGVKWIR 232

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
               +P +++  LI+   + D +  YL LP+Q  S+ +LK M R+ T      II ++R 
Sbjct: 233 LLYCYPEEITKELIEEIKNNDKVCKYLDLPIQQISNSVLKRMGRKTTKETIIDIIKKLRK 292

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD- 383
               I + +  IVGFPGET+ +F    + V  +   +   FKYS   GT  + M EQ+D 
Sbjct: 293 EIEGITLRTSLIVGFPGETEGEFSELKEFVSDVKLDKLGVFKYSKEEGTSAALMEEQIDE 352

Query: 384 --ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQS 437
             +  + E ++ LQ+ + +     N   +G+I EV++E  G ++    GR    SP +  
Sbjct: 353 EIKEKREEEIMILQQSISK---DINKEKIGKIYEVIVE--GTKEDMYYGRNYEMSPEIDG 407

Query: 438 VVLNSKNHN--IGDIIKVRIT 456
            +   K+ N  IGDIIKV++T
Sbjct: 408 EIYFEKDENVKIGDIIKVKVT 428


>gi|260911738|ref|ZP_05918314.1| MiaB family RNA modification enzyme [Prevotella sp. oral taxon 472
           str. F0295]
 gi|260634163|gb|EEX52277.1| MiaB family RNA modification enzyme [Prevotella sp. oral taxon 472
           str. F0295]
          Length = 431

 Score =  160 bits (406), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 125/452 (27%), Positives = 214/452 (47%), Gaps = 46/452 (10%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDD--ADLIVLNTCHIREKAAEKVYSFLGRIR 88
           + GC  N+ DS  +   F + GY  V+   +   +++V+NTC   E A E+  + +    
Sbjct: 10  TMGCSKNLVDSELLMKQFEANGYHCVHDSKNPKGEIVVINTCGFIESAKEESINTI---- 65

Query: 89  NLKNSRIKEGGDL-LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147
            L+ ++ KE G L  + V GC++Q   +E+ +  P V+   G   Y  L + L     GK
Sbjct: 66  -LEFAQAKEEGRLKQLYVMGCLSQRYQKELEQEIPQVDKFYGKFNYKNLLKDL-----GK 119

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVT-----AFLTIQEGCDKFCTFCVVPYTRGIE 202
            V+                    N  R +T     A+L I EGCD+ C +C +P   G  
Sbjct: 120 GVI-----------------ASCNGTRSITTPRHYAYLKISEGCDRSCAYCAIPLITGKH 162

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR   ++++E R L+  GV E  ++ Q +  + G  ++G++   ++L+  +++I+G+  
Sbjct: 163 TSRPKEEILEEVRSLVSQGVKEFQIIAQEL-TYYGVDINGQR-QITNLISEMADIEGVEW 220

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R   ++P      L++       +  Y+ + +Q  SD +L  M+R  T  +  ++I RI
Sbjct: 221 IRLHYAYPNQFPIDLLEVIKSKPNVCKYIDIALQHISDNMLTRMHRHVTKAQTMELIKRI 280

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE-Q 381
           R   P I + +  +VGFPGETDDDF   +D V    + +  +F YS   GT  +   E  
Sbjct: 281 REEIPGIHLRTTLMVGFPGETDDDFNELLDFVKWARFERMGAFIYSEEEGTYSAKHYEDN 340

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWL------ 435
           V   VK  RL  L    +E         VG+ + V+I++  KE    +GR+ W       
Sbjct: 341 VPNEVKQRRLDQLMALQQEISAEVEAQKVGKTLRVIIDR--KEGDYYIGRTEWASPEVDP 398

Query: 436 QSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
           + ++  +   ++G    VRITD +   LYGE+
Sbjct: 399 EVLIPATMRLHVGKFYNVRITDSEEFDLYGEI 430


>gi|260174153|ref|ZP_05760565.1| putative Fe-S oxidoreductase [Bacteroides sp. D2]
 gi|315922418|ref|ZP_07918658.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313696293|gb|EFS33128.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 439

 Score =  160 bits (406), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 112/396 (28%), Positives = 199/396 (50%), Gaps = 28/396 (7%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N  ++  +  +    G       + AD+ V+NTC + E A +K    + R+   
Sbjct: 16  TLGCKLNFSETSTIGKILREVGVRTARKGEKADICVVNTCSVTEMADKKCRQAIHRL--- 72

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL---ERARFGK 147
               +K+     V+V GC AQ +  ++ +    V+VV+G +    L + L   ++   G+
Sbjct: 73  ----VKQHPGAFVIVTGCYAQLKPGDVAKIDG-VDVVLGAEQKGELLQYLGDLQKHEKGE 127

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
            +  T   +       S  D    R R    FL +Q+GCD FC++C +P+ RG   + ++
Sbjct: 128 AITTTTKDIRSFSPSCSRGD----RTR---FFLKVQDGCDYFCSYCTIPFARGRSRNGTI 180

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
           + +V++AR+    G  EI L G N+  + GK   GE  +F DL+ +L +++G+ R R ++
Sbjct: 181 ASMVEQARQAAAEGGKEIVLTGVNIGDF-GK-TTGE--SFFDLVKALDQVEGIERYRISS 236

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
             P  ++D +I+        MP+ H+P+QSG D +L+ M RR+    +   + +I+ V P
Sbjct: 237 IEPNLLTDAIIEFVSHSRSFMPHFHIPLQSGCDEVLQLMRRRYDTALFASKVRKIKEVMP 296

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG---SNMLEQVDE 384
           D  I  D IVG  GET + F      +D +   Q   F YS R GT       ++   ++
Sbjct: 297 DAFIGVDVIVGTRGETPEYFEQAYQFIDGLDVTQLHVFSYSERPGTQALKIEYVVSPEEK 356

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
           + +++RLL L     ++  +F    +GQ++ VL+EK
Sbjct: 357 HQRSQRLLTLSD---QKTQAFYARHIGQVMPVLMEK 389


>gi|160885195|ref|ZP_02066198.1| hypothetical protein BACOVA_03193 [Bacteroides ovatus ATCC 8483]
 gi|156109545|gb|EDO11290.1| hypothetical protein BACOVA_03193 [Bacteroides ovatus ATCC 8483]
          Length = 439

 Score =  160 bits (405), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 121/447 (27%), Positives = 219/447 (48%), Gaps = 31/447 (6%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N  ++  +  +    G       + AD+ V+NTC + E A +K    + R+   
Sbjct: 16  TLGCKLNFSETSTIGKILREAGVRTARKGEKADICVVNTCSVTEMADKKCRQAIHRL--- 72

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL---ERARFGK 147
               +K+  D  VVV GC AQ +  ++ +    V+VV+G +    L + L   ++   G+
Sbjct: 73  ----VKQHPDAFVVVTGCYAQLKPGDVAKIDG-VDVVLGAEQKGELLQYLGDLQKHEKGE 127

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
            +  T   +       S  D    R R    FL +Q+GCD FC++C +P+ RG   + ++
Sbjct: 128 AITTTTKDIRSFSPSCSRGD----RTR---FFLKVQDGCDYFCSYCTIPFARGRSRNGTI 180

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
           + +V++ R+    G  EI L G N+  + GK   GE  +F DL+ +L ++ G+ R R ++
Sbjct: 181 ASMVEQTRQAAAEGGKEIVLTGVNIGDF-GK-TTGE--SFFDLVKALDQVDGIERYRISS 236

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
             P  ++D +I+        MP+ H+P+QSG D +L+ M RR+    +   + +I+ V P
Sbjct: 237 IEPNLLTDEIIEFVSHSRSFMPHFHIPLQSGCDEVLQLMRRRYDTALFASKVKKIKEVMP 296

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG---SNMLEQVDE 384
           D  I  D IVG  GET + F      +D +   Q   F YS R GT       ++   ++
Sbjct: 297 DAFIGVDVIVGTRGETPEYFEQAYQFIDGLDVTQLHVFSYSERPGTQALKIEYVVSPEEK 356

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
           + +++RLL L     ++  +F    +GQ + VL+EK  K    + G +     V + S +
Sbjct: 357 HQRSQRLLALSD---QKTQAFYARHIGQTMPVLMEK-SKAGAPMHGFTENYIRVEVESDD 412

Query: 445 HNIGDIIKVRITDV--KISTLYGELVV 469
                ++ VR+ +   +++ L G +++
Sbjct: 413 SLDNQVVNVRLGEFNEEMTALKGTILI 439


>gi|294339958|emb|CAZ88321.1| conserved hypothetical protein; putative enzyme [Thiomonas sp. 3As]
          Length = 466

 Score =  160 bits (405), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 131/470 (27%), Positives = 209/470 (44%), Gaps = 57/470 (12%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC   + DS R+     +QGY+   S   ADL+++NTC   + A ++    +G     
Sbjct: 22  SLGCPKALVDSERILTELRAQGYDTSKSYAGADLVIVNTCGFIDAAVQESLDAIGEA--- 78

Query: 91  KNSRIKEGGDLLVVVAGCVAQ----AEGEEILRR-SPIVNVVVGPQTYYRLPELLERARF 145
               + E G   V+V GC+      A G  ++R   P V  V GP       E+L+    
Sbjct: 79  ----LAENGK--VIVTGCLGARNDAATGNNLVREVHPKVLAVTGPHA---TDEVLQHVH- 128

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
              V+   +   D F  L +   G        A+L I EGC+  CTFC++P  RG  +SR
Sbjct: 129 --AVLPKPH---DPFVDL-VPPAGIKLTPKHYAYLKISEGCNHRCTFCIIPAMRGDLVSR 182

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYSL 254
            + +V+ EAR L  +GV E+ ++ Q+ +A           W G+ +        D L SL
Sbjct: 183 PIGEVLSEARALFASGVKELLVVSQDTSAYGVDVKYRTGFWDGRPIRTRMTELVDALGSL 242

Query: 255 S-EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
           + E    VRL Y   +P       + A G +   +PYL +P+Q     +L+ M R  +  
Sbjct: 243 AAEHDAWVRLHYVYPYPHVDEVLPLMAQGRI---LPYLDVPLQHAHPDVLRRMKRPASGE 299

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
              + I R R + P++ + S FI GFPGET+ +F+  +D + +    +   F YSP  G 
Sbjct: 300 RNLERIARWREICPELVVRSTFIAGFPGETEAEFQTLLDFIREAELDRVGCFAYSPVEGA 359

Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSP 433
             + + + V E ++ ER         E         VGQ++ VL+++  +E G  VGR+ 
Sbjct: 360 TANALADPVPEALREERRARFMAVAEEVSTRKLHKRVGQVMRVLVDQASREGG--VGRT- 416

Query: 434 WLQSVVLNSKNHNI---------------GDIIKVRITDVKISTLYGELV 468
           +  +  ++ K H +               G  ++ RI       L GELV
Sbjct: 417 FADAPEIDGKVHLLPPDKPSTIMRLAQSGGQFVRARIVRTDGHDLVGELV 466


>gi|319404904|emb|CBI78505.1| conserved hypothetical protein [Bartonella rochalimae ATCC
           BAA-1498]
          Length = 427

 Score =  160 bits (405), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 115/372 (30%), Positives = 182/372 (48%), Gaps = 33/372 (8%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           ++GC++N Y+S  +     S G   +        I+ NTC +    AE V      IR  
Sbjct: 7   TFGCRLNSYESEIIRKESTSAGLNELK----GGAIIFNTCAV---TAEAVRQAKQAIRKA 59

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEI-LRRSPIVNVVVG------PQTYYRLPELLERA 143
           K    ++     ++V GC AQ E +   L +   V++++G        +Y +LP+     
Sbjct: 60  K----RKNPHACIIVTGCAAQTEAKNFSLMKE--VDLILGNEEKLHAHSYRQLPD----- 108

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT-AFLTIQEGCDKFCTFCVVPYTRGIE 202
            FG    D    V D  E   I     N   G T AF+ +Q GCD  CTFC++PY+RG  
Sbjct: 109 -FGINH-DEKLRVNDIMEVHKIAPHMINALEGRTRAFVQVQNGCDHRCTFCIIPYSRGRS 166

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS-LSEIKGLV 261
            S  +  ++++ ++L+ NG+ EI L G ++ ++ G  L G K T   L+ + L  +  L 
Sbjct: 167 RSVPMGIIIEQIKQLVGNGIQEIVLTGVDLTSY-GPDLPG-KITLGKLVSTILHHVPDLP 224

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           RLR ++    +    LI        +MP+LHL +Q+G + ILK M RRH      Q    
Sbjct: 225 RLRLSSIDSIEADQELINLLAYEKRIMPHLHLSLQAGDNMILKRMKRRHLRENAIQFCQD 284

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R+ RP I   +D I GFP ET++ F+ ++ L+ + G      F +SPR GTP + M + 
Sbjct: 285 LRAKRPTIVYGADLIAGFPTETEEMFQNSLALIHECGLTHLHVFPFSPREGTPAARMPQI 344

Query: 382 VDE--NVKAERL 391
             E   ++AE+L
Sbjct: 345 SREIIKIRAEKL 356


>gi|323100040|gb|ADX30521.1| MiaB-like protein 1 [Plutella xylostella]
          Length = 542

 Score =  160 bits (405), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 131/472 (27%), Positives = 219/472 (46%), Gaps = 46/472 (9%)

Query: 14  VSQIVDQCIVP--QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCH 71
           V +++ Q +VP  Q  +VK++GC  N  DS  M  +  +QGY+  +    A L +LN+C 
Sbjct: 48  VEKVILQSVVPGTQTIYVKTWGCAHNNSDSEYMVGLLAAQGYQLTDDKWSAQLWLLNSCT 107

Query: 72  IREKAAEKVYSF--LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNV-VV 128
           ++  A E   +   LG+ R +            VVVAGCV Q       R   +  + +V
Sbjct: 108 VKNPAEEHFRNEIELGQARGIH-----------VVVAGCVPQGAP----RAGYLAGLSIV 152

Query: 129 GPQTYYRLPELLERAR-------FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLT 181
           G     R+ E++E          FG++  D          +L  V     RK  +   + 
Sbjct: 153 GVHQIDRIVEIVEETLKGHTVRLFGQKKTDDGKKAGGASLQLPKV-----RKNPLIEIIA 207

Query: 182 IQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD 241
           I  GC   CT+C   + RG   S    ++V+ AR+    GVCEI L  ++   + G+ + 
Sbjct: 208 INTGCLNQCTYCKTKHARGELGSYPPEEIVERARQSFKEGVCEIWLTSEDTGTY-GRDIG 266

Query: 242 GEKCTFSDLL-YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL--DVLMPYLHLPVQSG 298
               +  +LL   ++ I    RLR   ++P  M + L +  G +    +  +LH+PVQSG
Sbjct: 267 ---TSLPELLDQPVAAIPAGCRLRLGMTNPPYMLEHLPRVAGIMRHSRVYKFLHVPVQSG 323

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           SD++L  M R ++  ++  ++D +R   P I I++D I GFP ET  D   T+ L  +  
Sbjct: 324 SDQVLADMKREYSRKDFGYVVDYLRKEVPGITIATDIICGFPTETAADHELTVSLCRQYR 383

Query: 359 YAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDAC--VGQIIEV 416
           +   F  ++  R GTP +NM +   + VK        K+L E   S+      VG+  EV
Sbjct: 384 FPSLFINQFFARPGTPAANMTKVPGQEVKKR-----TKELSELFRSYEPYGHKVGETQEV 438

Query: 417 LIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           L      +K   VG + + + V++  +   +G ++ V+IT     ++ GE +
Sbjct: 439 LDTDISHDKKYFVGHNEFYEQVLVPKEERYMGKMLTVKITSASKFSMMGEPI 490


>gi|83942143|ref|ZP_00954605.1| MiaB-like tRNA modifying enzyme [Sulfitobacter sp. EE-36]
 gi|83847963|gb|EAP85838.1| MiaB-like tRNA modifying enzyme [Sulfitobacter sp. EE-36]
          Length = 418

 Score =  160 bits (405), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 116/393 (29%), Positives = 182/393 (46%), Gaps = 26/393 (6%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           ++GC++N Y++  M+++    G +        D +++NTC +  +A  K    + ++R  
Sbjct: 8   NHGCRLNAYETEAMKELAEQAGLK--------DAVIINTCAVTAEAVRKARQDIRKLR-- 57

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV- 149
                K   D  ++V GC AQ E E   + + +  V+   +           A F     
Sbjct: 58  -----KANPDARLIVTGCAAQTEPETFTKMAEVDAVIGNTEKMVGATWQGLAADFIGETE 112

Query: 150 ---VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
              VD   SV +    L  +DG   R R   A++ +Q GCD  CTFC++PY RG   S  
Sbjct: 113 ALQVDDIMSVTETAGHL--IDGFGTRSR---AYVQVQNGCDHRCTFCIIPYGRGNSRSVP 167

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
              VVD+ ++L+D G  E+ L G ++ +W G  L         ++  L  +  L RLR +
Sbjct: 168 AGVVVDQIKRLVDKGFNEVVLTGVDLTSW-GADLPATPKLGDLVMRILRLVPDLPRLRIS 226

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
           +    ++ + L++A      LMP+LHL +Q G D ILK M RRH   +  +     R +R
Sbjct: 227 SIDSIEVDENLMQAIATEPRLMPHLHLSLQHGDDMILKRMKRRHLRDDAIRFAQEARKLR 286

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           PD+   +D I GFP ETD  F  ++ LV          F YS R GTP + M   V+  +
Sbjct: 287 PDMTFGADIIAGFPTETDAMFENSLKLVTDCDLTWLHVFPYSAREGTPAARM-PAVNGTL 345

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419
             ER   L+     Q      A  G+  +VL+E
Sbjct: 346 IKERAAQLRAAGDAQVARHLAAQQGRAHQVLME 378


>gi|167902426|ref|ZP_02489631.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Burkholderia
           pseudomallei NCTC 13177]
          Length = 463

 Score =  160 bits (405), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 127/465 (27%), Positives = 210/465 (45%), Gaps = 50/465 (10%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC   + DS ++     ++GYE   + D ADL+V+NTC   ++A ++    +G     
Sbjct: 21  SLGCPKALVDSEQIITQLRAEGYEISGTYDGADLVVVNTCGFIDEAVQESLDAIGEA--- 77

Query: 91  KNSRIKEGGDLLVVVAGCVA---QAEGEEILRR-SPIVNVVVGPQTYYRLPELLERARFG 146
               + E G   V+V GC+     A G  ++    P V  V GP     + + +  +   
Sbjct: 78  ----LAENGK--VIVTGCLGAKKSASGSGLIAEVHPKVLAVTGPHAVGEVMQAV-HSHLP 130

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           K          D F  L +   G        A+L I EGC+  C+FC++P  RG  +SR 
Sbjct: 131 KP--------HDPFVDL-VPAAGIKLTPRHYAYLKISEGCNHRCSFCIIPSMRGELVSRP 181

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYSLS 255
           +++V+ EA  L  +GV E+ ++ Q+ +A           W G+ L   K   ++L+ +L 
Sbjct: 182 VAEVMLEAENLFKSGVKELLVISQDTSAYGVDVKYRTGFWNGRPL---KTRMTELVGALG 238

Query: 256 EIKG----LVRLRYTTSHPRDMSDCLIKAHGDLD-VLMPYLHLPVQSGSDRILKSMNRRH 310
           E+       VRL Y   +P       + A G L   ++PYL +P Q     +LK M R  
Sbjct: 239 ELAAQYGAWVRLHYVYPYPHVDEIIPMMAQGPLKGHVLPYLDVPFQHAHPEVLKRMKRPA 298

Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370
            A    + + + R + PD+ I S FI GFPGETD  F A +D +      +   F YSP 
Sbjct: 299 NAERVLERVQKWREICPDLTIRSTFIAGFPGETDAQFEALLDFIRDAELDRVGCFAYSPV 358

Query: 371 LGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKL 428
            G   + +   + ++V+  R     +   E   +     +G+ ++VLI++   E   G+ 
Sbjct: 359 EGASANALDGALPDDVREARRARFMEVAEEVSAARIARKIGKTLKVLIDEVNAEGGIGRT 418

Query: 429 VGRSPWLQSVVL------NSKNHNIGDIIKVRITDVKISTLYGEL 467
              +P +  VV        SK + +G+ + V+IT      L+GE+
Sbjct: 419 AADAPEIDGVVYVEPAAKASKRYKVGEFVSVKITGADGHDLWGEV 463


>gi|24213838|ref|NP_711319.1| 2-methylthioadenine synthetase [Leptospira interrogans serovar Lai
           str. 56601]
 gi|81589771|sp|Q8F710|RIMO_LEPIN RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|24194676|gb|AAN48337.1| 2-methylthioadenine synthetase [Leptospira interrogans serovar Lai
           str. 56601]
          Length = 437

 Score =  160 bits (405), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 112/446 (25%), Positives = 215/446 (48%), Gaps = 26/446 (5%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++F++ + GC  N+ DS+ M      +G+   +  +++D   +NTC   + A E+    +
Sbjct: 3   KKFYITTLGCPKNIADSMSMHHSLLEEGFTLASLPEESDFHFINTCTFIQSATEETIQTI 62

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
                L  +++K+     +VV GC A+   + I    P V++  G   Y +  ++L R +
Sbjct: 63  -----LSAAQVKKQNHQKLVVVGCFAERYPDNIHSEIPEVDLFFGTGKYSQAGKIL-REK 116

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
           F +         +   ER  +     N  +   A++ + +GC++ C+FC++P  RG  + 
Sbjct: 117 FPELSPSQLEFNDSLLERWKLSSKIENYSKPY-AYVKVSDGCNRGCSFCIIPSFRGKFVE 175

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
             L  ++ +  + I  G  EI L+ Q+   +   G D E     D++  ++EI  L  LR
Sbjct: 176 SPLDDILRDTNRAIRAGAKEICLVSQDTVYY---GRDSE--ILLDMVRKVAEIDSLEILR 230

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
               +P   ++ LI+  G+   + PYL  P+Q  S +ILK MNR   +  ++ +    R 
Sbjct: 231 LLYLYPDKKTEKLIRLMGETSKIAPYLESPLQHVSSKILKVMNRTGESSYFKDLFSLARE 290

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           V+P + I + FI+G+PGE  +D    +  ++     +   F YSP+ GT G+ + + V E
Sbjct: 291 VKPGLEIRTSFIIGYPGEEPEDVDQILRFIEDTRPEKVNLFSYSPQEGTKGAQLKQTVSE 350

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVVL 440
             K++R+  ++    E     +++ +G+  + +++  G E G++V R    +P +  VV 
Sbjct: 351 KEKSKRINLIRDSHLEILEEIHESRIGRTYDAIVD--GIEDGQVVVRRFQDAPEMDEVVY 408

Query: 441 NSKNHNIGDI--IKVRITDVKISTLY 464
                 + D+  I  RI  V+I + Y
Sbjct: 409 ------VDDVSLIPGRIGKVRIDSFY 428


>gi|120436584|ref|YP_862270.1| radical SAM superfamily protein, UPF0004 [Gramella forsetii KT0803]
 gi|238066249|sp|A0M3K8|RIMO_GRAFK RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|117578734|emb|CAL67203.1| radical SAM superfamily protein, UPF0004 [Gramella forsetii KT0803]
          Length = 450

 Score =  160 bits (405), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 132/454 (29%), Positives = 221/454 (48%), Gaps = 45/454 (9%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R  V + GC  NVYDS  +     +   + V+  +D +++V+NTC   + A E+  + + 
Sbjct: 10  RINVVTLGCSKNVYDSEILMGQLKANDKDVVHE-EDGNIVVINTCGFIDNAKEQSVNTI- 67

Query: 86  RIRNLKNSRIKEGGDL-LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
               L+    K+ GD+  V V GC+++    ++ +  P V+   G      LP LL    
Sbjct: 68  ----LEFVEKKQQGDVDKVFVTGCLSERYKPDLQKEIPDVDQYFGTT---ELPGLL---- 116

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
                ++ DY  E   ERL+     Y       A+L I EGCD+ C+FC +P  RG   S
Sbjct: 117 ---SALEADYKHELIGERLTTTPKNY-------AYLKIAEGCDRPCSFCAIPLMRGGHKS 166

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGL--V 261
             +  +V EA KL  NGV E+ L+ Q++  +   GLD  +K   ++LL +L +++G+  +
Sbjct: 167 TPIENLVTEAEKLAANGVKELILIAQDLTYY---GLDLYKKRNLAELLENLVKVEGIEWI 223

Query: 262 RLRYT--TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           RL Y   T  P D+ + + +       +  YL +P+Q  SD +LKSM R  T  +  +++
Sbjct: 224 RLHYAFPTGFPMDVLEVMKREPK----VCNYLDIPLQHISDDLLKSMRRGTTHEKTTKLL 279

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
              R   P++AI +  IVG+PGET++ ++   + V ++ + +   F YS    T   N+ 
Sbjct: 280 KEFRKTVPEMAIRTTLIVGYPGETEEHYQELKEWVKEMRFERLGCFTYSHEENTHAYNLE 339

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWL 435
           + V + VK ER   + +   +     N   +G++  V+I++  KE    +GR    SP +
Sbjct: 340 DDVPQEVKQERANEIMEIQSQISWELNQQKIGEVFNVVIDR--KEGNYFIGRTEYDSPDV 397

Query: 436 QSVVLNSKNH---NIGDIIKVRITDVKISTLYGE 466
            + VL          GD   V+I +     LYGE
Sbjct: 398 DNEVLIDATTVYLKTGDYYDVKIAEAADFDLYGE 431


>gi|296127462|ref|YP_003634714.1| RNA modification enzyme, MiaB family [Brachyspira murdochii DSM
           12563]
 gi|296019278|gb|ADG72515.1| RNA modification enzyme, MiaB family [Brachyspira murdochii DSM
           12563]
          Length = 417

 Score =  160 bits (405), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 119/438 (27%), Positives = 217/438 (49%), Gaps = 44/438 (10%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           + ++GC++N Y+S ++     + G   +  +D+A+ I +NTC +   + +K+ ++L ++ 
Sbjct: 5   LHTFGCRLNQYESEKISYELKNMG-ANITELDNAEAIAINTCTVTNDSDKKLIAYLEKLG 63

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIV--NVVVGPQTYYRLPELLERARFG 146
           +L   +        V + GC    + ++    S I+  N+++ P          E+    
Sbjct: 64  DLSQKK--------VFLIGCYVSKKDKD----SSIIKDNIILIPN---------EKKEEA 102

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
             ++   ++         I +  +  +    A+L IQ+GC+ FCT+C+V   RG   S  
Sbjct: 103 SEII---FNTMHNNSENKINNPIFFPQEQSRAYLKIQDGCEVFCTYCIVSRVRGSHRSVE 159

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE--IKGLVRLR 264
             ++ D  +   D G  EI L G N+ ++        + +F ++L  + E   K  +R+R
Sbjct: 160 PQKIFDAVKMANDYGYKEIVLTGLNLGSYNY----NNEISFYNILTQILEHSSKYGIRIR 215

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
            ++  P    D LI    + DVL P+ H+P+QSGS++ILK MNRR+T  +Y  + +++  
Sbjct: 216 LSSVEPLYFDDNLISLFKNDDVLCPHAHIPLQSGSNKILKLMNRRYTREDYLSVTEKLYK 275

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
              ++AISSD +VGFP E + DF  T DL +K  + +   F+YS R  TP S M  QV  
Sbjct: 276 TNSNMAISSDVMVGFPHEENTDFNDTYDLCEKSKFIKIHIFRYSNRENTPSSKMDSQVGY 335

Query: 385 NVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
             K +R   L  L  KL++  + + +A  G+ ++++IEK   +   +     +L+     
Sbjct: 336 RTKLKRAKILNTLNGKLKD--LYYKNA-EGRDLKIVIEKTLSDNNYIGTSGEYLK----- 387

Query: 442 SKNHNIGDIIKVRITDVK 459
            K H+   + K  +T VK
Sbjct: 388 CKLHSESSLNKKELTSVK 405


>gi|322806672|emb|CBZ04241.1| ribosomal protein S12p Asp88 (E. coli) methylthiotransferase
           [Clostridium botulinum H04402 065]
          Length = 445

 Score =  160 bits (405), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 131/441 (29%), Positives = 222/441 (50%), Gaps = 37/441 (8%)

Query: 31  SYGCQMNVYDSLRMEDMFF--SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           S GC  N  DS   E M +  ++  E V +  +A +I++NTC   E A E+  + + ++ 
Sbjct: 10  SLGCDKNRIDS---ELMLYKLNEEAELVKNPKEAQVIIVNTCGFIETAKEESINTILQMA 66

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER-ARFGK 147
           + K +        ++VV GC+ Q    E+    P +++++G   Y +L E ++   + G+
Sbjct: 67  SYKKTH----NCKVLVVTGCLTQRYKGELKELIPEMDIMLGVNDYDKLLESIKVFLKSGE 122

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNR---KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
           +      S   K+    I +G  NR       TA++ I EGC+ FCT+C +P  RG   S
Sbjct: 123 K------SFYHKYSDTKINEG--NRILTTPTYTAYVRIAEGCNNFCTYCAIPRIRGKYRS 174

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R    ++ E   L   GV EI L+ Q+   + G  + G+K    +LL  +S+++G+  +R
Sbjct: 175 RKKENILKEVENLAKQGVREIILIAQDTTMY-GIDIYGKK-VLHELLRDISKVEGVKWIR 232

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
               +P +++  LI+   + D +  YL LP+Q  S+ +LK M R+ T      II ++R 
Sbjct: 233 LLYCYPEEITKELIEEIKNNDKVCKYLDLPIQQISNSVLKRMGRKTTKETIINIIKKLRK 292

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD- 383
               I + +  IVGFPGET+ +F    + V  +   +   FKYS   GT  + M EQ+D 
Sbjct: 293 EIEGITLRTSLIVGFPGETEGEFSELKEFVSDVKLDKLGVFKYSKEEGTSAALMEEQIDE 352

Query: 384 --ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQS 437
             +  + E ++ LQ+ + +     N   +G+I EV++E  G ++    GR    SP +  
Sbjct: 353 EIKEKREEEIMILQQSISK---DINKEKIGKIYEVIVE--GTKEDMYYGRNYEISPEIDG 407

Query: 438 VVLNSKNHN--IGDIIKVRIT 456
            +   K+ N  IGDIIKV++T
Sbjct: 408 EIYFEKDENVKIGDIIKVKVT 428


>gi|315608919|ref|ZP_07883891.1| RNA modification enzyme [Prevotella buccae ATCC 33574]
 gi|315249299|gb|EFU29316.1| RNA modification enzyme [Prevotella buccae ATCC 33574]
          Length = 434

 Score =  160 bits (405), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 130/453 (28%), Positives = 209/453 (46%), Gaps = 45/453 (9%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVN--SMDDADLIVLNTCHIREKAA-EKVYSFLGRI 87
           + GC  N+ DS  +   F + GY  V+  +    ++ V+NTC   E A  E + + L  +
Sbjct: 10  TMGCSKNLVDSEVLMKQFEANGYRCVHDAAHPQGEIAVINTCGFIETAKQESINTILEFV 69

Query: 88  RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF-- 145
           +     R+ +     + V GC++Q   +E+    P V+   G   Y +L   L +A    
Sbjct: 70  QAKTEGRLNK-----LYVMGCLSQRYKDELEAEIPEVDKFYGKFNYKQLLADLGKAELPS 124

Query: 146 --GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             G+R + T                         A+L I EGCD+ C +C +P   G  +
Sbjct: 125 CNGRRHLTTPRHY---------------------AYLKIAEGCDRHCAYCAIPLMTGRHV 163

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR + +++DE R+L+  GV E  ++ Q +  + G  LDG     ++L+  +++I G+  +
Sbjct: 164 SRPMDEILDEVRELVAGGVKEFQVIAQELTYY-GIDLDGHH-HIAELISRMADIPGVKWI 221

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R   ++P      L+    +   +  YL + +Q  SD IL  M+R  T  E  ++I ++R
Sbjct: 222 RLHYAYPNQFPMDLLDVMRERPNVCRYLDIALQHISDHILSRMHRHVTKQETVELIRKMR 281

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE-QV 382
              P I I +  +VGFPGET+DDFR  +D V +  + +  +F YS   GT  +   E  V
Sbjct: 282 EAVPGIHIRTTLLVGFPGETEDDFRQLVDFVREARFERMGAFAYSEEEGTYSAEHYEDDV 341

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSV 438
             +VK  RL  L    +E         VGQ++ V+I++  KE    VGR    SP +   
Sbjct: 342 PADVKQRRLDELMAVQQEISAEIEAGKVGQVMPVIIDR--KEGNYYVGRTEFCSPEVDPE 399

Query: 439 VL---NSKNHNIGDIIKVRITDVKISTLYGELV 468
           VL     K    G    V+I D +   LYGEL 
Sbjct: 400 VLIPAGRKRLRTGCFYNVKIVDSEEFDLYGELA 432


>gi|308233969|ref|ZP_07664706.1| SSU ribosomal protein S12P methylthiotransferase [Atopobium vaginae
           DSM 15829]
 gi|328944022|ref|ZP_08241487.1| MiaB tRNA modifying enzyme-like protein [Atopobium vaginae DSM
           15829]
 gi|327491991|gb|EGF23765.1| MiaB tRNA modifying enzyme-like protein [Atopobium vaginae DSM
           15829]
          Length = 504

 Score =  160 bits (405), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 120/476 (25%), Positives = 207/476 (43%), Gaps = 50/476 (10%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC  N  D+ RM  +    G+E       AD++++NTC   E A  +       +   
Sbjct: 41  TLGCAKNQVDTDRMRALLLKSGFEESRDASSADVVIINTCSFLESATSESIEVTLDLAQK 100

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
           + S I +   L +++ GCV    G  + +  P V+  V       +  ++     G    
Sbjct: 101 RTSGITK---LPIIMCGCVPSRYGAALDKELPEVSAFVKATDEDSIVGIVSDV-LGIEHP 156

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
              +S E     L  ++G        +AF+ I EGCD++C FC +P+ RG   SR   ++
Sbjct: 157 TFSFSQELSARALRTIEG-------TSAFVKISEGCDRYCAFCAIPFIRGHYASRCPEEI 209

Query: 211 VDEARKLIDNGVCEITLLGQNVNAW------RGKGL---------DGEKCTFSD------ 249
             E   L++ GV EI L+GQ+   W      RG            D    +  D      
Sbjct: 210 FSEITMLMEGGVKEIILIGQDTGIWGEDFSSRGAASVLHKDSDLHDPSSASSFDKNSTQH 269

Query: 250 ----LLYSLSEIKGLVR-----LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300
               L + L E+  +VR     +R     P  M++ LI    D   ++PY+ +P+Q  ++
Sbjct: 270 ESMNLAWLLREVARIVRPYKAWIRVLYLQPEGMTEDLIATIRDTPEVLPYIDIPIQHCNE 329

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
           R+LK M R  +A +  ++   +R   P + + +  +VGFP ETD++    +D   +  + 
Sbjct: 330 RLLKKMGRSGSASQLHKLFAHLRHEIPQMVLRTTGMVGFPTETDEEAAELVDFFKQEEFD 389

Query: 361 QAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
               F YS  LGT  + M  Q+    K ER   L+    E   +     VG++++V+I+ 
Sbjct: 390 YMSVFSYSQELGTTAAKMRGQISAETKIERTQTLRDTAEELGFAATAKHVGEVVDVIIDS 449

Query: 421 --HGKEKGKLVGRSPWLQS------VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
                   + +G + W Q+      V +   + N GD+++V++ +     L GELV
Sbjct: 450 IDMDSPDKERIGHA-WFQAPDCDGCVHILDTDANPGDVVRVKLKEAYCYELVGELV 504


>gi|297677249|ref|XP_002816517.1| PREDICTED: LOW QUALITY PROTEIN: CDK5 regulatory subunit-associated
           protein 1-like 1-like, partial [Pongo abelii]
          Length = 577

 Score =  160 bits (405), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 123/460 (26%), Positives = 218/460 (47%), Gaps = 47/460 (10%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           Q+ +++++GC  N  D   M     + GY+   +  DADL +LN+C ++  A +    F 
Sbjct: 64  QKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDH---FR 120

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             I+  +    K      +VVAGCV QA+  +   +      ++G Q   R+ E++E   
Sbjct: 121 NSIKKAQEENKK------IVVAGCVPQAQPRQDYLKG---LSIIGVQQIDRVVEVVEETI 171

Query: 145 FGKRVVDTDYSVED--KFERLSI-VDGGYNR-----KRGVTAFLTIQEGCDKFCTFCVVP 196
            G       YSV    K+++    + G   R     K+ V + +++   C   CT+C   
Sbjct: 172 KG-------YSVSHLCKYKQNGARLHGARLRLKKKKKKCVVSLISLNTXCLNACTYCKTK 224

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256
           + RG   S  + ++VD A++    GVCEI L  ++  A+ G+ +         LL+ L E
Sbjct: 225 HARGNLASYPIDELVDRAKQSFQEGVCEIWLTSEDTGAY-GRDIG---TNLPTLLWKLVE 280

Query: 257 I--------KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
           +         G+    Y   H  +M+  L     +   +  +LH+PVQS SD +L  M R
Sbjct: 281 VIPEGAMLRLGMTNPPYILEHLEEMAKIL-----NHPRVYAFLHIPVQSASDSVLMEMKR 335

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
            +   ++++++D ++   P I I++D I GFPGETD DF+ T+ LV++  +   F  ++ 
Sbjct: 336 EYCVADFKRVVDFLKEKVPGITIATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFY 395

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL 428
           PR GTP + M EQV   VK +R   L +       S  D  +G+  +VL+ +   +    
Sbjct: 396 PRPGTPAAKM-EQVPAQVKKQRTKDLSRVF--HSYSPYDHKIGERQQVLVTEESFDSKFY 452

Query: 429 VGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           V  + + + V++      +G +++V I +     + G+ V
Sbjct: 453 VAHNQFYEQVLVPKNPAFMGKMVEVDIYESGKHFMKGQPV 492


>gi|329942587|ref|ZP_08291397.1| RNA modification enzyme, MiaB family protein [Chlamydophila
           psittaci Cal10]
 gi|332287217|ref|YP_004422118.1| MiaB-like tRNA modifying enzyme [Chlamydophila psittaci 6BC]
 gi|313847811|emb|CBY16802.1| conserved hypothetical protein [Chlamydophila psittaci RD1]
 gi|325506891|gb|ADZ18529.1| MiaB-like tRNA modifying enzyme [Chlamydophila psittaci 6BC]
 gi|328815497|gb|EGF85485.1| RNA modification enzyme, MiaB family protein [Chlamydophila
           psittaci Cal10]
 gi|328914465|gb|AEB55298.1| MiaB-like tRNA modifying enzyme [Chlamydophila psittaci 6BC]
          Length = 422

 Score =  160 bits (404), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 122/445 (27%), Positives = 208/445 (46%), Gaps = 47/445 (10%)

Query: 33  GCQMNVYDSLRMEDMFFSQGYERVNSMD-DADLIVLNTCHIREKAAEKVYSFLGRIRNLK 91
           GC++N Y+     D     GY  +   +   DL ++NTC +   A           R+  
Sbjct: 16  GCRVNQYEIQSYRDQLNFLGYREITDPEVPCDLCIVNTCAVTGSAESSG-------RHAV 68

Query: 92  NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVD 151
               ++  D  +VV GC+ +A+ E          +V   + +  + ++            
Sbjct: 69  RQVCRQNPDAFLVVTGCLGEADREFFNSLDRQCLLVSNKEKHLLMEKIFP---------- 118

Query: 152 TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVV 211
              S++D  E       G +R     AF+ +Q+GC+ FC++C++PY RG   SR + +++
Sbjct: 119 ---SIQDLPEFRIRSFSGKSR-----AFIKVQDGCNSFCSYCIIPYLRGRSRSRPVQEIL 170

Query: 212 DEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPR 271
           +E   L+  G  E+ + G NV  ++ +G      + + L+  + EI G+ R+R ++  P 
Sbjct: 171 EEISGLVTQGYREVVIAGINVGDYQDQGK-----SLAYLISQVDEIPGIERIRISSIDPE 225

Query: 272 DMSDCLIKAHGDLDVLMP------YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
           D+ D L       D+L+         HL +QSGS+ ILK MNR+++  ++   +D +RSV
Sbjct: 226 DVQDDL------RDILLSGKHTCHSSHLVLQSGSNAILKRMNRKYSRGDFLDCVDALRSV 279

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P  A ++D IVGFPGETD DF  T+ +V+ +G+ +   F +SPR  T       Q+  +
Sbjct: 280 DPQYAFTTDVIVGFPGETDQDFEETLRIVEDVGFIKVHIFPFSPRERTKAYTFSSQLPVS 339

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL--NSK 443
           V  ER   L    RE         +G  + VL+E+   + G   G S +   V    +  
Sbjct: 340 VINERKKHLAHVAREVAHREQMRRIGDTLSVLVER--VDGGFAYGHSSYFDMVGFPADPS 397

Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468
             ++  +I VRI  V+   L G+ V
Sbjct: 398 EVSVNTLIDVRIESVEEDVLKGKRV 422


>gi|225460743|ref|XP_002268292.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 615

 Score =  160 bits (404), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 131/464 (28%), Positives = 222/464 (47%), Gaps = 52/464 (11%)

Query: 22  IVP--QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEK 79
           I+P  Q  ++K++GC  N  DS  M     + GY   ++ ++ADL ++NTC ++  +   
Sbjct: 50  IIPGTQTIYMKTFGCSHNQSDSEYMAGQLAAFGYVLSDNPEEADLWLINTCTVKSPSQSA 109

Query: 80  VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL 139
           + + + + R+ K           +VVAGCV Q  G   L+    V++V G Q   R+ E+
Sbjct: 110 MDTLITKGRSSKKP---------LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEV 157

Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           +E    G  V   +         L  +D    RK      L I  GC   CT+C   + R
Sbjct: 158 VEETLKGHEVRLLNRKT------LPALDLPKVRKNKFVEILPINVGCLGACTYCKTKHAR 211

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIK 258
           G   S ++  +V   R +I +GV EI L  ++  A+ G+ +     T   LL ++ SE+ 
Sbjct: 212 GHLGSYTVDSLVRRVRTVIADGVKEIWLSSEDTGAY-GRDIG---VTLPILLNAIVSELP 267

Query: 259 ---------GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
                    G+    Y   H ++M+  L         +  +LH+PVQSGSD IL +MNR 
Sbjct: 268 PDGGTMLRIGMTNPPYILEHLKEMAVVLRHP-----CVYSFLHVPVQSGSDAILSAMNRE 322

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369
           +T  E+R ++D +  + P + I++D I GFPGETD++F  T+ L+ +  + Q    ++ P
Sbjct: 323 YTVTEFRTVVDTLTELVPGMQIATDIICGFPGETDEEFAQTVSLIQEYRFPQVHISQFYP 382

Query: 370 RLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFN-----DACVGQIIEVLIEKHGKE 424
           R GTP + M ++V   V       ++K+ RE    F      +   G++  + I +   +
Sbjct: 383 RPGTPAARM-KKVPSAV-------VKKRSRELTSIFEAFTPYNGMEGRVERIWISEIATD 434

Query: 425 KGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
              LVG +     V++ +    +G    V+IT V   +++GEL+
Sbjct: 435 GIHLVGHTKGYMQVLVVAPRSLMGTSAIVKITSVGRWSVFGELI 478


>gi|170754856|ref|YP_001781949.1| RNA modification protein [Clostridium botulinum B1 str. Okra]
 gi|238065365|sp|B1II37|RIMO_CLOBK RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|169120068|gb|ACA43904.1| RNA modification enzyme, MiaB family [Clostridium botulinum B1 str.
           Okra]
          Length = 445

 Score =  160 bits (404), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 130/439 (29%), Positives = 220/439 (50%), Gaps = 33/439 (7%)

Query: 31  SYGCQMNVYDSLRMEDMFF--SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           S GC  N  DS   E M +  ++  E V +  +A +I++NTC   E A E+  + + ++ 
Sbjct: 10  SLGCDKNRIDS---ELMLYKLNEEAELVKNPKEAQVIIVNTCGFIETAKEESINTILQMA 66

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER-ARFGK 147
           + K +        ++VV GC+ Q    E+    P +++++G   Y +L E ++   + G+
Sbjct: 67  SYKKTH----NCKVLVVTGCLTQRYKGELKELIPEMDIMLGVNDYDKLLESIKVFLKSGE 122

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNR---KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
           +      S   K+    I +G  NR       TA++ I EGC+ FCT+C +P  RG   S
Sbjct: 123 K------SFYHKYSDTKINEG--NRILTTPTYTAYVRIAEGCNNFCTYCAIPRIRGKYRS 174

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R    ++ E   L   GV EI L+ Q+   + G  + G+K    +LL  +S+++G+  +R
Sbjct: 175 RKKENILKEVENLAKQGVKEIILIAQDTTMY-GIDIYGKK-VLHELLRDISKVEGVKWIR 232

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
               +P +++  LI+   + D +  YL LP+Q  S+ +LK M R+ T      II ++R 
Sbjct: 233 LLYCYPEEITKELIEEIKNNDKVCKYLDLPIQQISNSVLKRMGRKTTKETIINIIKKLRK 292

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD- 383
               I + +  IVGFPGET+ +F    + V  +   +   FKYS   GT  + M EQ+D 
Sbjct: 293 EIEGITLRTSLIVGFPGETEGEFSELKEFVSDVKLDKLGVFKYSKEEGTSAALMEEQIDE 352

Query: 384 --ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE--KHGKEKGKLVGRSPWLQSVV 439
             +  + E ++ LQ+ + +     N   +G+I EV++E  K     G+    SP +   +
Sbjct: 353 EIKEKREEEIMILQQSISK---DINKEKIGKIYEVIVEGIKEDMYYGRNYEMSPEIDGEI 409

Query: 440 LNSKNHN--IGDIIKVRIT 456
              K+ N  IGDIIKV++T
Sbjct: 410 YFEKDENVRIGDIIKVKVT 428


>gi|62184901|ref|YP_219686.1| hypothetical protein CAB260 [Chlamydophila abortus S26/3]
 gi|62147968|emb|CAH63716.1| conserved hypothetical protein [Chlamydophila abortus S26/3]
          Length = 421

 Score =  160 bits (404), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 121/444 (27%), Positives = 208/444 (46%), Gaps = 46/444 (10%)

Query: 33  GCQMNVYDSLRMEDMFFSQGYERVNSMD-DADLIVLNTCHIREKAAEKVYSFLGRIRNLK 91
           GC++N Y+     D     GY  +   +   DL ++NTC +   A           R+  
Sbjct: 16  GCRVNQYEIQSYRDQLNFLGYREITDPEIPCDLCIVNTCAVTGSAESSG-------RHAV 68

Query: 92  NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVD 151
               ++  D L+VV GC+ +A+ E          +V     +  + ++            
Sbjct: 69  RQVCRQNPDALLVVTGCLGEADKEFFYSLDRQCLLVSNKDKHQLMEKIFP---------- 118

Query: 152 TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVV 211
              S++D  E       G +R     AF+ +Q+GC+ FC++C++PY RG   SR + +++
Sbjct: 119 ---SIQDLPEFRIRSFSGKSR-----AFIKVQDGCNSFCSYCIIPYLRGRSRSRPVQEIL 170

Query: 212 DEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPR 271
           +E   L+  G  E+ + G NV  ++ +G      + + L+  + EI G+ R+R ++  P 
Sbjct: 171 EEISGLVSQGYREVVIAGINVGDYQDQGK-----SLAYLISQVDEIPGIERIRISSIDPE 225

Query: 272 DMSDCLIKAHGDLDVLMP------YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
           D+ D L       DVL+         HL +QSGS+ ILK MNR+++  ++   ++ +RS 
Sbjct: 226 DVQDDL------RDVLLSGKHTCHSSHLVLQSGSNAILKRMNRKYSRGDFLDCVEALRSA 279

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P    ++D IVGFPGETD DF  T+ +V+ +G+ +   F +SPR  T       Q+  +
Sbjct: 280 DPQYTFTTDVIVGFPGETDQDFEETLRIVEDVGFIKVHIFPFSPRERTKAYTFSSQLPVS 339

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS-KN 444
           V  ER   L    RE         +G  + VL+E+   ++G   G S +   V   +  +
Sbjct: 340 VINERKKHLAHVAREVAYREQRRRIGDTLSVLVER--VDEGIAYGHSSYFDMVGFPADPD 397

Query: 445 HNIGDIIKVRITDVKISTLYGELV 468
            ++  +I VRI  V+   L G+ V
Sbjct: 398 VSVNTLIDVRIESVEEDILKGKRV 421


>gi|167562580|ref|ZP_02355496.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Burkholderia
           oklahomensis EO147]
          Length = 453

 Score =  160 bits (404), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 127/475 (26%), Positives = 215/475 (45%), Gaps = 60/475 (12%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R  + S GC   + DS ++     ++GYE   + D ADL+V+NTC   ++A ++    +G
Sbjct: 6   RIGIVSLGCPRALVDSEQIITQLRAEGYEISGTYDGADLVVVNTCGFIDEAVQESLDAIG 65

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVA---QAEGEEILRR-SPIVNVVVGPQTYYRLPELLE 141
                    + E G   V+V GC+     A G  ++    P V  V GP     + + + 
Sbjct: 66  EA-------LAENGK--VIVTGCLGAKKSASGSGLIEEVHPKVLAVTGPHAVGEVMQAV- 115

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
            +   K          D F  L +   G        A+L I EGC+  C+FC++P  RG 
Sbjct: 116 HSHLPKP--------HDPFVDL-VPAAGIKLTPRHYAYLKISEGCNHRCSFCIIPSMRGD 166

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDL 250
            +SR +++V+ EA  L  +GV E+ ++ Q+ +A           W G+ L   K   ++L
Sbjct: 167 LVSRPVAEVMLEAENLFKSGVKELLVISQDTSAYGVDVKYRTGFWNGRPL---KTRMTEL 223

Query: 251 LYSLSEIKG----LVRLRYTTSHPR------DMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300
           + +L E+       VRL Y   +P        M++  +K H     ++PYL +P Q    
Sbjct: 224 VGALGELAAQYGAWVRLHYVYPYPHVDEIIPMMAEGPLKGH-----VLPYLDVPFQHAHP 278

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
            +LK M R   A +  + + + R + PD+ I S FI GFPGET+  F   +D + +    
Sbjct: 279 DVLKRMKRPANAEKVLERVQKWREICPDLTIRSTFIAGFPGETEAQFETLLDFIREAELD 338

Query: 361 QAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
           +   F YSP  G   + +   + ++V+  R     +       +  +  VG+ ++VLI++
Sbjct: 339 RVGCFAYSPVEGASANELDGALPDDVREARRARFMEVAEAVSAARIERKVGKTLKVLIDE 398

Query: 421 HGKEK--GKLVGRSPWLQSVVL------NSKNHNIGDIIKVRITDVKISTLYGEL 467
              E   G+    +P +  VV        SK + +GD + V+IT      L+GE+
Sbjct: 399 VNAEGGIGRTAADAPEIDGVVYVEPATKASKRYKVGDFVSVKITGADGHDLWGEV 453


>gi|52549017|gb|AAU82866.1| conserved hypothetical protein [uncultured archaeon GZfos21B5]
          Length = 430

 Score =  160 bits (404), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 120/446 (26%), Positives = 221/446 (49%), Gaps = 50/446 (11%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + F++++GC  N  D++ M  +  + G+E V    +AD++++NTC + ++        L 
Sbjct: 12  KVFIETFGCTANTGDTMEMRAILRNAGHEIVEE-SEADIVIVNTCTVTKRTE------LN 64

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            I+ L  + +KE G   VVVAGC+A A+ E       +V  ++G       P  ++ +  
Sbjct: 65  VIKRL--NELKERGKA-VVVAGCMAAAQPE-------LVKSILGDGVAMVTPRDIQASE- 113

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            K+ +D D                     GV A +TI +GC   CT+C+V   RG   S 
Sbjct: 114 -KQRLDFD---------------------GVIAVITIAQGCIGKCTYCIVKQARGKLKSY 151

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
              ++ +  +  +++G  EI +  Q+ +A+   G          LL  ++ ++G  R+R 
Sbjct: 152 KSEKICEAVKSAVESGANEIRITSQDSSAY---GWSSTDIKLPALLEQITSVEGDFRIRV 208

Query: 266 TTSHPRDMS---DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
              +P  +    D L++A  + + +  + H+PVQSGSDR+L+ M R +   ++ +I+  I
Sbjct: 209 GMMNPFTLMPILDELLEAF-NTEKIFKFFHVPVQSGSDRVLREMKRNYKVADFVEIVTNI 267

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+      IS+DFI+GFP ET++DF A+++L+++I   +    ++SPR GT  S + + +
Sbjct: 268 RARFRQSTISTDFIIGFPTETEEDFFASLNLMEEIKPEKVNITRFSPRPGTEASKLTDLL 327

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
            E  K  R             + N    G  + VL+ + GK KG ++ R    +++VL  
Sbjct: 328 -EREKKRRSRIFSTVYHNIVFAKNKELEGAELPVLVTETGK-KGGVIARDSAYRAIVLKD 385

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
            +  +G   KVR+ + K + L  +++
Sbjct: 386 -DLPLGTRYKVRVKEAKSTYLVADIL 410


>gi|51473604|ref|YP_067361.1| tRNA-methylthiotransferase (MiaB protein) [Rickettsia typhi str.
           Wilmington]
 gi|51459916|gb|AAU03879.1| tRNA-methylthiotransferase (MiaB protein) [Rickettsia typhi str.
           Wilmington]
          Length = 421

 Score =  160 bits (404), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 112/397 (28%), Positives = 191/397 (48%), Gaps = 35/397 (8%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           ++GC++N+Y+S  +       G + V         + NTC + + A ++    + + +  
Sbjct: 16  TFGCRLNIYESEIIRKNLELSGLDNV--------AIFNTCAVTKSAEKQARQAIRKAK-- 65

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT----YYRLPELLERARFG 146
                K   DL ++V GC AQA  +     S +  V+   +     YY++ +        
Sbjct: 66  -----KNNPDLKIIVTGCSAQANPKMYGNMSEVDKVIGNEEKLLSHYYQITD-------Q 113

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           K  V+   SV++    L     G +R     AF+ +Q GCD  CTFC++PY RG   S  
Sbjct: 114 KISVNDIMSVKETACHLVSSFDGKSR-----AFIQVQNGCDHNCTFCIIPYGRGRSRSTP 168

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS-LSEIKGLVRLRY 265
           +  +V + + L+  G  E+ + G +V A+ G  L G   TF+ ++   L+ +  L R+R 
Sbjct: 169 IGTIVAQVKHLVLKGFKEVVITGVDVTAY-GSDLPGSP-TFAQMIKRVLNLVPELKRIRL 226

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
           ++    ++ D   +       +MP+ H+ +QSG D ILK M RRH      +   ++R++
Sbjct: 227 SSIDIAEVDDEFFELIAYSKRIMPHFHISLQSGDDMILKRMKRRHNRASVIEFCQKLRAI 286

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
           RP+++  +D I GFP ET++ F  T  L+ +        F YS R GTP   M  QV +N
Sbjct: 287 RPEVSFGADIIAGFPTETNEMFENTRKLILEAELQYLHVFPYSEREGTPAIRM-PQVPKN 345

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422
           ++ ER   L++    Q   F    +GQ +E+LIE + 
Sbjct: 346 IRKERAKILRQDGYNQLTEFFKKHIGQKVELLIENNN 382


>gi|15807855|ref|NP_285512.1| ribosomal protein S12 methylthiotransferase [Deinococcus
           radiodurans R1]
 gi|81552183|sp|Q9RYW7|RIMO_DEIRA RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|6460480|gb|AAF12186.1|AE001862_12 conserved hypothetical protein [Deinococcus radiodurans R1]
          Length = 504

 Score =  160 bits (404), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 131/478 (27%), Positives = 222/478 (46%), Gaps = 58/478 (12%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC   + DS R+     ++GYE   S + AD +++NTC     A E+  S +G   + 
Sbjct: 27  SLGCPKALVDSERILTQLRAEGYEVAPSYEGADAVIVNTCGFITPAVEESLSAIGEALDA 86

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT------YYR--LP----- 137
                       V+V GC+ +   E+I+ R P V  + G +       + R  LP     
Sbjct: 87  TGK---------VIVTGCLGE-RPEKIMERHPKVAAITGSEAVDDVMGHVRELLPIDQGA 136

Query: 138 --ELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
              LL  A  G R    +    +      +            A++ + EGC+  C FC++
Sbjct: 137 FTGLLPVAAPGMRA-GVETPQRENTRHGDVFAPSVKLTPRHYAYVKVAEGCNHTCAFCII 195

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA------WRGKGLDGE--KCTF 247
           P  RG+++SR    V+ EA +LI  G  E+ ++ Q+ +A      +R     GE  +   
Sbjct: 196 PKLRGLQVSRDAGAVLYEAYRLIAGGTKELMIIAQDTSAYGVDLRYRESEFQGEQVRAHL 255

Query: 248 SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307
           +DL   L E+   VR+ Y   +P       + A G    ++PYL +P+Q  S +ILK M 
Sbjct: 256 TDLAVKLGEMGAWVRMHYVYPYPHVDRVVELMAQGK---VLPYLDIPLQHASPKILKLM- 311

Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           RR  A +    I R R + P++ I S FIVGFPGET++DF+  +  ++     +  +F Y
Sbjct: 312 RRPGAGKQLDTIRRWREICPELVIRSTFIVGFPGETEEDFQELLQFLEDARLDRVGAFPY 371

Query: 368 SPRLGTPGSNMLEQVDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE 424
           S       + +   V E VK ERL   + + +++  +++S     VG++++V+I++   +
Sbjct: 372 SDIEEADANALPGAVPEEVKQERLARFMEVAQRISTEKLSEK---VGRVMDVIIDEFNDD 428

Query: 425 K---------GKLVGRSPWLQS-VVLNSKNH----NIGDIIKVRITDVKISTLYGELV 468
           +         G+  G +P +   V L + +      IGDI++ RI D     L+GE++
Sbjct: 429 EDDQPGTRLIGRTKGDAPGIDGQVYLYAGDFAGLVKIGDIVRARIEDSDEYDLFGEVI 486


>gi|83953198|ref|ZP_00961920.1| MiaB-like tRNA modifying enzyme [Sulfitobacter sp. NAS-14.1]
 gi|83842166|gb|EAP81334.1| MiaB-like tRNA modifying enzyme [Sulfitobacter sp. NAS-14.1]
          Length = 418

 Score =  160 bits (404), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 116/393 (29%), Positives = 182/393 (46%), Gaps = 26/393 (6%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           ++GC++N Y++  M+++    G +        D +++NTC +  +A  K    + ++R  
Sbjct: 8   NHGCRLNAYETEAMKELAEQAGLK--------DAVIVNTCAVTAEAVRKARQDIRKLR-- 57

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV- 149
                K   D  ++V GC AQ E E   + + +  V+   +           A F     
Sbjct: 58  -----KANPDARLIVTGCAAQTEPETFTKMAEVDAVIGNTEKMVGATWKGLAADFIGETE 112

Query: 150 ---VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
              VD   SV +    L  +DG   R R   A++ +Q GCD  CTFC++PY RG   S  
Sbjct: 113 ALQVDDIMSVTETAGHL--IDGFGTRSR---AYVQVQNGCDHRCTFCIIPYGRGNSRSVP 167

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
              VVD+ ++L+D G  E+ L G ++ +W G  L         ++  L  +  L RLR +
Sbjct: 168 AGVVVDQIKRLVDKGFNEVVLTGVDLTSW-GADLPATPKLGDLVMRILRLVPDLPRLRIS 226

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
           +    ++ + L++A      LMP+LHL +Q G D ILK M RRH   +  +     R +R
Sbjct: 227 SIDSIEVDENLMQAIATEPRLMPHLHLSLQHGDDMILKRMKRRHLRDDAIRFAQEARKLR 286

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           PD+   +D I GFP ETD  F  ++ LV          F YS R GTP + M   V+  +
Sbjct: 287 PDMTFGADIIAGFPTETDAMFENSLKLVTDCDLTWLHVFPYSAREGTPAARM-PAVNGTL 345

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419
             ER   L+     Q      A  G+  +VL+E
Sbjct: 346 IKERAAQLRAAGDAQVARHLAAQQGRAHQVLME 378


>gi|319943645|ref|ZP_08017926.1| RNA modification enzyme [Lautropia mirabilis ATCC 51599]
 gi|319742878|gb|EFV95284.1| RNA modification enzyme [Lautropia mirabilis ATCC 51599]
          Length = 497

 Score =  160 bits (404), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 140/482 (29%), Positives = 225/482 (46%), Gaps = 62/482 (12%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
            P   FV S GC   + DS R+     ++GY+  N  + ADL+V+NTC   ++A  +   
Sbjct: 39  APSVGFV-SLGCPKALVDSERIVTQLRAEGYQISNQYEGADLVVVNTCGFIDEAVAESLD 97

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGE-----EILRR-SPIVNVVVGPQTYYRL 136
            +G         + E G   V+V GC+    G+      ++R   P V  V GP   + L
Sbjct: 98  AIGEA-------LHENGK--VIVTGCLGARTGQGGKDSNLVREIHPSVLAVTGP---HAL 145

Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
            E++        V        D F  L +  GG        A+L I EGC+  C+FC++P
Sbjct: 146 EEVM------ANVHQHLPKPHDPFSDL-VPAGGIKLTPRHYAYLKISEGCNHRCSFCIIP 198

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFS 248
             RG   SR + +V+ EA  L+  GV E+ ++ Q+ +A+      R   +DG   K    
Sbjct: 199 SLRGDLDSRPIGEVMREAENLLKAGVKELLVISQDTSAYGVDLRYRTDFVDGRPVKTRLF 258

Query: 249 DLLYSLSEIK----GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304
           +L   L ++       VRL Y   +P       + A G   +++PYL +P+Q    RILK
Sbjct: 259 ELCRELGQLARQYGAWVRLHYVYPYPAVDDVLPLMAEG---LILPYLDVPLQHAHPRILK 315

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
            M R  +     + I   R V P++ I S FI GFPGET+++F+  +D +++    +   
Sbjct: 316 LMKRPASGERNIERIQAWRKVCPELTIRSTFIAGFPGETEEEFQYLLDFLEEAQLDRVGC 375

Query: 365 FKYSPRLGTPGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIE-- 419
           F YSP  G   +++ + + + V+ E   RL+ +Q+ + E +++     VGQ +EVL++  
Sbjct: 376 FAYSPVEGAAANDLPDPLPDEVREERAARLMEVQEGISEARMARK---VGQTLEVLVDAI 432

Query: 420 KHGKEKG--KLVGRS----PWLQSVVLNSKNHNIGD-------IIKVRITDVKISTLYGE 466
           +H  E+G  +LVGRS    P +   V    +    D        ++  ITD     L GE
Sbjct: 433 EHDPEEGWWRLVGRSQADAPEIDGQVYVELDEAPADGTMGPGTFVRAHITDYDAHDLVGE 492

Query: 467 LV 468
           L 
Sbjct: 493 LA 494


>gi|332759741|gb|EGJ90044.1| RNA modification enzyme, MiaB family protein [Shigella flexneri
           4343-70]
          Length = 395

 Score =  160 bits (404), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 125/422 (29%), Positives = 210/422 (49%), Gaps = 44/422 (10%)

Query: 64  LIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPI 123
           ++++NTC   + A ++    +G   N       E G   V+V GC+   E ++I    P 
Sbjct: 1   MVIVNTCGFIDSAVQESLEAIGEALN-------ENGK--VIVTGCLGAKE-DQIREVHPK 50

Query: 124 VNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFER-LSIV-DGGYNRKRGVTAFLT 181
           V  + GP +Y ++ E +             Y  + K    LS+V + G        A+L 
Sbjct: 51  VLEITGPHSYEQVLEHVHH-----------YVPKPKHNPFLSLVPEQGVKLTPRHYAYLK 99

Query: 182 IQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------ 235
           I EGC+  CTFC++P  RG  +SR + +V+ EA++L+D GV EI ++ Q+ +A+      
Sbjct: 100 ISEGCNHRCTFCIIPSIRGDLVSRPIGEVLSEAKRLVDAGVKEILVISQDTSAYGVDVKH 159

Query: 236 RGKGLDGE--KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHL 293
           R    +GE  K +   L   LS++    RL Y   +P       + A G +   +PYL +
Sbjct: 160 RTGFHNGEPVKTSMVSLCEQLSKLGIWTRLHYVYPYPHVDDVIPLMAEGKI---LPYLDI 216

Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
           P+Q  S RILK M R  +       I + R + P++ + S FIVGFPGET++DF+  +D 
Sbjct: 217 PLQHASPRILKLMKRPGSVDRQLARIKQWREICPELTLRSTFIVGFPGETEEDFQMLLDF 276

Query: 354 VDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACV 410
           + +    +   FKYSP  G   + + +QV E VK E   R + LQ+++  +++      V
Sbjct: 277 LKEARLDRVGCFKYSPVEGADANALPDQVPEEVKEERWNRFMQLQQQISAERLQEK---V 333

Query: 411 GQIIEVLIEKHGKEK--GKLVGRSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGE 466
           G+ I V+I++  +E   G+ +  +P +   V  +   N+  GDI++V++       L+G 
Sbjct: 334 GREILVIIDEVDEEGAIGRSMADAPEIDGAVYLNGETNVKPGDILRVKVEHADEYDLWGS 393

Query: 467 LV 468
            V
Sbjct: 394 RV 395


>gi|76808795|ref|YP_333722.1| ribosomal protein S12 methylthiotransferase [Burkholderia
           pseudomallei 1710b]
 gi|126454903|ref|YP_001066463.1| putative tRNA modifying protein [Burkholderia pseudomallei 1106a]
 gi|134277408|ref|ZP_01764123.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Burkholderia
           pseudomallei 305]
 gi|167738299|ref|ZP_02411073.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Burkholderia
           pseudomallei 14]
 gi|167815485|ref|ZP_02447165.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Burkholderia
           pseudomallei 91]
 gi|167845434|ref|ZP_02470942.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Burkholderia
           pseudomallei B7210]
 gi|217421309|ref|ZP_03452813.1| MiaB-like tRNA modifying enzyme YliG [Burkholderia pseudomallei
           576]
 gi|242314138|ref|ZP_04813154.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Burkholderia
           pseudomallei 1106b]
 gi|254179580|ref|ZP_04886179.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Burkholderia
           pseudomallei 1655]
 gi|254189030|ref|ZP_04895541.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Burkholderia
           pseudomallei Pasteur 52237]
 gi|254259851|ref|ZP_04950905.1| MiaB-like tRNA modifying enzyme YliG [Burkholderia pseudomallei
           1710a]
 gi|254297456|ref|ZP_04964909.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Burkholderia
           pseudomallei 406e]
 gi|123744448|sp|Q3JRT1|RIMO_BURP1 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|238065308|sp|A3NVU2|RIMO_BURP0 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|76578248|gb|ABA47723.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Burkholderia
           pseudomallei 1710b]
 gi|126228545|gb|ABN92085.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Burkholderia
           pseudomallei 1106a]
 gi|134251058|gb|EBA51137.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Burkholderia
           pseudomallei 305]
 gi|157807873|gb|EDO85043.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Burkholderia
           pseudomallei 406e]
 gi|157936709|gb|EDO92379.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Burkholderia
           pseudomallei Pasteur 52237]
 gi|184210120|gb|EDU07163.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Burkholderia
           pseudomallei 1655]
 gi|217395051|gb|EEC35069.1| MiaB-like tRNA modifying enzyme YliG [Burkholderia pseudomallei
           576]
 gi|242137377|gb|EES23779.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Burkholderia
           pseudomallei 1106b]
 gi|254218540|gb|EET07924.1| MiaB-like tRNA modifying enzyme YliG [Burkholderia pseudomallei
           1710a]
          Length = 463

 Score =  160 bits (404), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 127/465 (27%), Positives = 210/465 (45%), Gaps = 50/465 (10%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC   + DS ++     ++GYE   + D ADL+V+NTC   ++A ++    +G     
Sbjct: 21  SLGCPKALVDSEQIITQLRAEGYEISGTYDGADLVVVNTCGFIDEAVQESLDAIGEA--- 77

Query: 91  KNSRIKEGGDLLVVVAGCVA---QAEGEEILRR-SPIVNVVVGPQTYYRLPELLERARFG 146
               + E G   V+V GC+     A G  ++    P V  V GP     + + +  +   
Sbjct: 78  ----LAENGK--VIVTGCLGAKKSASGSGLIAEVHPKVLAVTGPHAVGEVMQAV-HSHLP 130

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           K          D F  L +   G        A+L I EGC+  C+FC++P  RG  +SR 
Sbjct: 131 KP--------HDPFVDL-VPAAGIKLTPRHYAYLKISEGCNHRCSFCIIPSMRGELVSRP 181

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYSLS 255
           +++V+ EA  L  +GV E+ ++ Q+ +A           W G+ L   K   ++L+ +L 
Sbjct: 182 VAEVMLEAENLFKSGVKELLVISQDTSAYGVDVKYRTGFWNGRPL---KTRMTELVGALG 238

Query: 256 EIKG----LVRLRYTTSHPRDMSDCLIKAHGDLD-VLMPYLHLPVQSGSDRILKSMNRRH 310
           E+       VRL Y   +P       + A G L   ++PYL +P Q     +LK M R  
Sbjct: 239 ELAAQYGAWVRLHYVYPYPHVDEIIPMMAQGPLKGHVLPYLDVPFQHAHPEVLKRMKRPA 298

Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370
            A    + + + R + PD+ I S FI GFPGETD  F   +D + +    +   F YSP 
Sbjct: 299 NAERVLERVQKWREICPDLTIRSTFIAGFPGETDAQFETLLDFIREAELDRVGCFAYSPV 358

Query: 371 LGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKL 428
            G   + +   + ++V+  R     +   E   +     VG+ ++VLI++   E   G+ 
Sbjct: 359 EGASANALDGALPDDVREARRARFMEVAEEVSAARIARKVGKTLKVLIDEVNAEGGIGRT 418

Query: 429 VGRSPWLQSVVL------NSKNHNIGDIIKVRITDVKISTLYGEL 467
              +P +  VV        SK + +G+ + V+IT      L+GE+
Sbjct: 419 AADAPEIDGVVYVEPAAKASKRYKVGEFVSVKITGADGHDLWGEV 463


>gi|325295705|ref|YP_004282219.1| ribosomal protein S12 methylthiotransferase rimO
           [Desulfurobacterium thermolithotrophum DSM 11699]
 gi|325066153|gb|ADY74160.1| Ribosomal protein S12 methylthiotransferase rimO
           [Desulfurobacterium thermolithotrophum DSM 11699]
          Length = 432

 Score =  160 bits (404), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 132/460 (28%), Positives = 220/460 (47%), Gaps = 47/460 (10%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQG-YERVNSMDDADLIVLNTC-HIREKAAEKVYS 82
           ++  V S GC  N+ D+  +  +  + G    V+++ DAD+I++NTC  I+    E +  
Sbjct: 2   KKIAVISLGCPKNLVDTENIVGLLKATGNVVFVDNLKDADIIIVNTCGFIQPAKEESIDE 61

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            L  I   K S  K      VVVAGC+ Q   EE+ R  P V+V +G             
Sbjct: 62  ILNAIEEKKESPEK-----KVVVAGCLYQRYKEELKRELPEVDVFIG------------- 103

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT----AFLTIQEGCDKFCTFCVVPYT 198
                 V + + SVE    +   V   Y  +  +T    A+L I EGC   CT+C +P  
Sbjct: 104 ------VDEIEKSVEKILNQKIAVQKPYLLREILTPPHIAYLKISEGCSNACTYCAIPLI 157

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258
           RG   SR + + V+EA++L D GV E+ ++ Q+  A+      GEK     LL  L +I+
Sbjct: 158 RGKLKSRPIEEAVEEAKRLADKGVKELYVIAQDTTAYLYD--KGEKEGLVKLLEKLEKIE 215

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           G+  +R   ++P  +SD LI    + + ++ Y  +P Q  ++++L SM R++T  +   +
Sbjct: 216 GIDWIRLMYTYPSHISDSLIDFVANSEKVLKYFDVPFQHINNKVLASMGRKYTRKDAEVL 275

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           ID++R+  PDI + + FI+GFP E + +F   +  +  I +  A  FKYS    T    +
Sbjct: 276 IDKLRNRIPDITLRTTFIIGFPTEGEREFEELLSFIKDIEFDWAGFFKYSREEDTAAYKL 335

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDA----CVGQIIEVLIEKHGKEKGKLVGRSPW 434
            +  DE VK  RL  ++    E Q S  +      +G+  +++++   +E    V    +
Sbjct: 336 GDIPDE-VKESRLNLIE----EVQYSIYEKKQMQLLGKEFDLIVDSPSEEMPGFVEARSY 390

Query: 435 -----LQSVVLNSKNHNIGDIIKVRITDVKIST-LYGELV 468
                +  +V    N   G+I+K  IT +  S  L GE +
Sbjct: 391 KNAYEIDGIVYLKGNFKPGEIVKAEITALASSVDLIGEPI 430


>gi|325270230|ref|ZP_08136837.1| Fe-S oxidoreductase [Prevotella multiformis DSM 16608]
 gi|324987531|gb|EGC19507.1| Fe-S oxidoreductase [Prevotella multiformis DSM 16608]
          Length = 450

 Score =  160 bits (404), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 116/410 (28%), Positives = 189/410 (46%), Gaps = 27/410 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           RF+  + GC++N  ++       ++ G       + AD+ ++NTC + E A  K    + 
Sbjct: 13  RFY--TLGCKLNFSETSTFARTLYNMGVREAKKGEQADICLINTCSVTEVADHKCRQVIH 70

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R+       +++     V+V GC AQ E   +      V++V+G      L + L  A  
Sbjct: 71  RM-------VRQNPGAFVIVTGCYAQLESAAVAGIEG-VDLVLGSNEKADLIQYLSDA-- 120

Query: 146 GKRVVDTDYSVEDKFERLSI-------VDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
             +V     + E + E  S+            +R      FL +Q+GC+ FCT+C +PY 
Sbjct: 121 WNKVEAGKETTEGQAEYHSVRTKDIRSFQASCSRGNRTRYFLKVQDGCNYFCTYCTIPYA 180

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC--TFSDLLYSLSE 256
           RG   + +++ +V +A +    G  EI L G N+  +      GE    +F DL+ +L  
Sbjct: 181 RGFSRNPTIASLVSQAEEAAREGGKEIVLTGVNIGDF------GETTGESFLDLVKALDR 234

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           ++G+ R R ++  P  + D LI         MP+ H+P+QSGSD +LK M+RR+    + 
Sbjct: 235 VEGIRRFRISSLEPDLIDDDLIAYCARSRAFMPHFHIPLQSGSDEVLKLMHRRYDTALFA 294

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
             I  I+ + PD  I  D +VG  GE  + F      +D +   Q   F YS R GT   
Sbjct: 295 HKIRFIKEMMPDAFIGVDVMVGSRGERPEYFEDCYRFLDSLPVTQLHVFPYSERPGTSAL 354

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG 426
           ++   VD+  K  R   L K   E+  +F  A +GQ  +VL EK  + K 
Sbjct: 355 SIPYVVDDREKKRRAHRLLKLSDEKTRAFYAARIGQEADVLFEKAARGKA 404


>gi|53719172|ref|YP_108158.1| ribosomal protein S12 methylthiotransferase [Burkholderia
           pseudomallei K96243]
 gi|81379851|sp|Q63UQ8|RIMO_BURPS RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|52209586|emb|CAH35539.1| conserved hypothetical protein [Burkholderia pseudomallei K96243]
          Length = 459

 Score =  160 bits (404), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 127/465 (27%), Positives = 210/465 (45%), Gaps = 50/465 (10%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC   + DS ++     ++GYE   + D ADL+V+NTC   ++A ++    +G     
Sbjct: 17  SLGCPKALVDSEQIITQLRAEGYEISGTYDGADLVVVNTCGFIDEAVQESLDAIGEA--- 73

Query: 91  KNSRIKEGGDLLVVVAGCVA---QAEGEEILRR-SPIVNVVVGPQTYYRLPELLERARFG 146
               + E G   V+V GC+     A G  ++    P V  V GP     + + +  +   
Sbjct: 74  ----LAENGK--VIVTGCLGAKKSASGSGLIAEVHPKVLAVTGPHAVGEVMQAV-HSHLP 126

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           K          D F  L +   G        A+L I EGC+  C+FC++P  RG  +SR 
Sbjct: 127 KP--------HDPFVDL-VPAAGIKLTPRHYAYLKISEGCNHRCSFCIIPSMRGELVSRP 177

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYSLS 255
           +++V+ EA  L  +GV E+ ++ Q+ +A           W G+ L   K   ++L+ +L 
Sbjct: 178 VAEVMLEAENLFKSGVKELLVISQDTSAYGVDVKYRTGFWNGRPL---KTRMTELVGALG 234

Query: 256 EIKG----LVRLRYTTSHPRDMSDCLIKAHGDLD-VLMPYLHLPVQSGSDRILKSMNRRH 310
           E+       VRL Y   +P       + A G L   ++PYL +P Q     +LK M R  
Sbjct: 235 ELAAQYGAWVRLHYVYPYPHVDEIIPMMAQGPLKGHVLPYLDVPFQHAHPEVLKRMKRPA 294

Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370
            A    + + + R + PD+ I S FI GFPGETD  F   +D + +    +   F YSP 
Sbjct: 295 NAERVLERVQKWREICPDLTIRSTFIAGFPGETDAQFETLLDFIREAELDRVGCFAYSPV 354

Query: 371 LGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKL 428
            G   + +   + ++V+  R     +   E   +     VG+ ++VLI++   E   G+ 
Sbjct: 355 EGASANALDGALPDDVREARRARFMEVAEEVSAARIARKVGKTLKVLIDEVNAEGGIGRT 414

Query: 429 VGRSPWLQSVVL------NSKNHNIGDIIKVRITDVKISTLYGEL 467
              +P +  VV        SK + +G+ + V+IT      L+GE+
Sbjct: 415 AADAPEIDGVVYVEPAAKASKRYKVGEFVSVKITGADGHDLWGEV 459


>gi|254468793|ref|ZP_05082199.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [beta
           proteobacterium KB13]
 gi|207087603|gb|EDZ64886.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [beta
           proteobacterium KB13]
          Length = 441

 Score =  160 bits (404), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 120/422 (28%), Positives = 207/422 (49%), Gaps = 64/422 (15%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           +P+  F+ S GC     D+ ++     +QGYE  +S D +D++V+NTC   + A E+   
Sbjct: 6   IPKIGFI-SLGCPKAGSDTEKIMTRVKTQGYEISSSYDKSDVVVVNTCGFIDSAIEESL- 63

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRR----------SPIVNVV--V 128
                 N  +  +K  G+  V+V GC+ +  G  EE  +             +V+++  V
Sbjct: 64  ------NTIDEALKSNGN--VIVTGCLGEKRGIIEERFKNLIAITGSEADKEVVDIINKV 115

Query: 129 GPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
            P+ +    +L+ ++  G R+  + Y                       A++ I EGC+ 
Sbjct: 116 APKPHDSFIDLIPKS--GLRLTPSHY-----------------------AYIKISEGCNH 150

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDG 242
            C+FC++P  RG   SR+   ++ EA+ L+D+GV E+ ++ Q+ +A+      +    DG
Sbjct: 151 KCSFCIIPSMRGKLASRTPEDILSEAQNLVDSGVTELIIISQDTSAYGVDFKVKQSFWDG 210

Query: 243 EKCTFSDLLYSLSEIKGL-VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
            K    DL +   E+K   + +R+   +P    D +I+   D + ++PYL +P Q  S +
Sbjct: 211 -KPVKRDLYHLAKELKKFGIWVRFHYIYPYPHIDHMIELM-DEETILPYLDVPFQHASPK 268

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
           ILKSM R   A +  + I   R + P+IA+ S FIVG+PGETD DF   +D + +     
Sbjct: 269 ILKSMKRPADAEDNLKRIQAWRQINPNIALRSTFIVGYPGETDHDFEQLIDFIKEANLDH 328

Query: 362 AFSFKYSPRLGTPGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLI 418
              F+YS   G     M +Q+ + VK E   RL+  QK L EQ++    + +G I  V++
Sbjct: 329 VGCFEYSNVEGATAKLMSDQIPDIVKKERYNRLMETQKTLSEQKLK---SLIGSIQHVVV 385

Query: 419 EK 420
           ++
Sbjct: 386 DE 387


>gi|297620406|ref|YP_003708543.1| MiaB-like tRNA modifying enzyme [Waddlia chondrophila WSU 86-1044]
 gi|297375707|gb|ADI37537.1| MiaB-like tRNA modifying enzyme [Waddlia chondrophila WSU 86-1044]
          Length = 458

 Score =  159 bits (403), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 131/453 (28%), Positives = 225/453 (49%), Gaps = 37/453 (8%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ DS  M  +    GYE   ++++AD IV+NTC   + + ++    L  I + 
Sbjct: 28  SLGCPRNLVDSEVMLGILLKAGYEPSQTLEEADHIVINTCGFLKASRDES---LQTINDA 84

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
              R KEG    V+V GC+ Q+  E I   SP V+  +G      + + +     G++V 
Sbjct: 85  LKQR-KEGAK--VIVTGCMVQSHKEMIT--SP-VDYFLGSGDVEGILDAVRSGEKGEQVT 138

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
                +E      +I    +       A+L I EGC K C +C++P  +G   S+  +QV
Sbjct: 139 SAKSYLEAGEVPRTISTPNH------YAYLKIAEGCRKQCAYCIIPTIKGRLKSKPAAQV 192

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT-FSDLLYSLSEIKGLVRLRYTTSH 269
           + E R L++ G  E+ L+ Q++  W GK +  ++      LL  L +++G   LR    +
Sbjct: 193 LKEFRVLLNQGAKEVILIAQDLGDW-GKDIGFKRTDGLIHLLKELLKVEGDYWLRLMYLY 251

Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR--- 326
           P +++  LI+   +   + PY+ +P+Q  +D +LKSM   H A    QII  I ++R   
Sbjct: 252 PDEITGELIQLMKEEPRICPYVDMPIQHVNDNMLKSM---HRATHRAQIIGTIETMRKQI 308

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           PDI+I +  IVGFPGET++ F      +++        F++S   G+    + EQ+ E V
Sbjct: 309 PDISIRTSLIVGFPGETEEQFLELAQFLEEQRLDNVGVFQFSREPGSHAYGLPEQIAEEV 368

Query: 387 KA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-----GKLVGRSPWLQSV 438
           K    +RL+ +Q+ + EQ++      VG++++V+IE +  E      G+  G+ P +   
Sbjct: 369 KQDRYDRLMQIQQHVVEQEMR---KWVGRVLDVVIEGYHPETRVLMVGRHRGQCPEIDGQ 425

Query: 439 VLNSKNHNI---GDIIKVRITDVKISTLYGELV 468
           VL + +  +   G   +V ITD+    L G ++
Sbjct: 426 VLINDSRGVDAFGKRYRVEITDISGYDLVGRVI 458


>gi|288962243|ref|YP_003452538.1| hypothetical protein AZL_d01680 [Azospirillum sp. B510]
 gi|288914509|dbj|BAI75994.1| hypothetical protein AZL_d01680 [Azospirillum sp. B510]
          Length = 439

 Score =  159 bits (403), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 139/455 (30%), Positives = 214/455 (47%), Gaps = 47/455 (10%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC   + DS R+     ++GYE   S D AD++++NTC   + A ++    +G     
Sbjct: 10  SLGCPKALVDSERILTRLRAEGYEISPSYDGADVVLVNTCGFLDSAKKESLDAIGEA--- 66

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               IKE G   V+V GC+   E + I +  P V  V GP  Y ++            V 
Sbjct: 67  ----IKENGR--VIVTGCMG-VESDLIRQIHPDVLAVTGPHQYEQV---------VSAVH 110

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
           D      + F  L   +G     R   A+L I EGC+  C+FC++P  RG  +SR +  V
Sbjct: 111 DAVPPTHNPFTDLVPPEGLRLTPRHY-AYLKISEGCNNRCSFCIIPSLRGDLVSRPIHSV 169

Query: 211 VDEARKLIDNGVCEITLLGQNVNAW-------RGKGLDGE-KCTFSDLLYSLSEIKGLVR 262
           + EA KL   GV E+ ++ Q+ +A+         K  D E +  F DL   L+     VR
Sbjct: 170 LREAEKLAVAGVKELLVISQDTSAYGVDVKYKTEKWYDREVRTRFFDLCNELANFDLWVR 229

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           L Y   +P       + A G +   +PYL +P Q  S  +LK+M RR  A E +  +DRI
Sbjct: 230 LHYVYPYPHVDEVIPLMAEGKI---LPYLDIPFQHASPTVLKAM-RRPAAQEKQ--LDRI 283

Query: 323 RSVR---PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
           R  R   P + + S FI GFPGET++DF+  +D + +    +   FKY P  G   +++ 
Sbjct: 284 RKWRDECPHLVLRSTFITGFPGETEEDFQFMLDWLKEAQLDRVGCFKYEPVEGATANDLP 343

Query: 380 EQVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPW 434
             V E VK    ER +  QK +  +++      VG  + VLI++  +E   G+    +P 
Sbjct: 344 GAVPEEVKQERWERFMETQKAISAERLQQK---VGYTLGVLIDEVDEEGAIGRSYADAPE 400

Query: 435 LQ-SVVLNSKNH-NIGDIIKVRITDVKISTLYGEL 467
           +  +V LN +     GD++ V I       L+G +
Sbjct: 401 IDGNVFLNGETGLKPGDMVDVTIEHADEYDLWGSV 435


>gi|206602637|gb|EDZ39118.1| RNA modification enzyme, MiaB family [Leptospirillum sp. Group II
           '5-way CG']
          Length = 483

 Score =  159 bits (403), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 119/415 (28%), Positives = 205/415 (49%), Gaps = 30/415 (7%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ D+  M      +G+  +  +++A++IV+NTC     A ++    L     L
Sbjct: 41  SLGCPKNLVDTETMIHSLSEKGFRVIPDLEEAEVIVVNTCSFVTDARKESIDTL-----L 95

Query: 91  KNSRIKE-GGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149
           + ++ KE G   ++V  GC+     EE+    P V++++ P     + ELL        +
Sbjct: 96  EMAQYKEIGKAKMLVGTGCLVSRYREELPGLLPEVDMLLSPSEETSIGELLSFPERKNSL 155

Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVT---AFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
             T   +             + RKR      A+L I EGCD  C+FC +P +RG+++SR+
Sbjct: 156 PPTPLIMPSSIP--------FRRKRLTPNHRAYLKISEGCDHTCSFCAIPLSRGLQVSRT 207

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
              +++E R + D GV E+TL+ Q++  +     DGE      LL  + +I  +  +R  
Sbjct: 208 RESLLEEVRMMADEGVREVTLIAQDLTRYGSDLEDGE--GLPRLLEEIDKIGRIPWVRLL 265

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
            ++P  ++D L+K   D   ++ YL +P Q  S  +LK MNR        ++IDRIR + 
Sbjct: 266 YAYPTQVTDRLLKVIRDSSTILKYLDIPFQHVSGTVLKRMNRPGNRESTMRLIDRIRRIL 325

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           PDI + + FIVGFPGET+++F    + +          F +S   GTP  +M  Q+   +
Sbjct: 326 PDITLRTTFIVGFPGETEEEFLEIEEFLKWSRLDHVGVFPFSREEGTPSFDMDGQIPARL 385

Query: 387 KAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-----KGKLVGRSP 433
           K +   RL+ +QK +  ++       +G+++ VLIE   ++      G+L G +P
Sbjct: 386 KTQRRKRLMGVQKAISLEK---KKDWLGKVMPVLIEGPSEQSPLILSGRLPGMAP 437


>gi|254446032|ref|ZP_05059508.1| RNA modification enzyme, MiaB family [Verrucomicrobiae bacterium
           DG1235]
 gi|198260340|gb|EDY84648.1| RNA modification enzyme, MiaB family [Verrucomicrobiae bacterium
           DG1235]
          Length = 427

 Score =  159 bits (403), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 106/390 (27%), Positives = 195/390 (50%), Gaps = 18/390 (4%)

Query: 36  MNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRI 95
           MN  ++L +E     +GY+ V   + ADL ++NTC +   A  K        R      +
Sbjct: 1   MNQSETLLIEQGLQERGYDIVPFGEAADLGIINTCTVTNLADSKC-------RQTIRQFV 53

Query: 96  KEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYS 155
           ++  +    V GC +Q   +EI      V++++G Q    + + + + +  K V+  +  
Sbjct: 54  RKNPEAYTAVIGCYSQMGSKEIAEIGG-VDLIIGNQEKMSVIDYIGQEKNEKPVIVREKI 112

Query: 156 VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEAR 215
            ++ F   +  D  +N++    A L IQ+GC   C+FC++P+ RG   +R +  +++EAR
Sbjct: 113 SQEDFTIHNFGDIPFNQR----ANLKIQDGCSFVCSFCIIPFARGAARAREMGNLLEEAR 168

Query: 216 KLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSD 275
           +  + G+ EI + G N+  +  KG          +L  L+ ++G+ R+R ++  P  +  
Sbjct: 169 QKAEQGIREIVITGVNIGTYDTKG-----GGLLKVLEGLNAVEGIDRIRISSIEPTTIPT 223

Query: 276 CLIKAHGDLD-VLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSD 334
            L     D    L+P+ H+P+QSG D++LK M RR++  EY + +       P + + SD
Sbjct: 224 ELFGLMNDPQHALLPFFHIPLQSGCDKVLKEMRRRYSVGEYLEFLHLAHDNVPGLYVGSD 283

Query: 335 FIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCL 394
            +VGFPGET++DF+ T  +     +     F YS R GT  +   +QV+   +A R   L
Sbjct: 284 IMVGFPGETEEDFQETCRVFLDNPFDFCHVFSYSERKGTVAARREDQVEIPERARRSAYL 343

Query: 395 QKKLREQQVSFNDACVGQIIEVLIEKHGKE 424
           ++   +++  F ++ +G+ + VL E    E
Sbjct: 344 RRLSAKKRYDFYESYLGKEMRVLFENPKPE 373


>gi|285808313|gb|ADC35844.1| MiaB-like tRNA modifying enzyme YliG [uncultured bacterium 89]
          Length = 495

 Score =  159 bits (403), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 127/453 (28%), Positives = 215/453 (47%), Gaps = 33/453 (7%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA-EKVYSFLGRIRN 89
           S GC  N+ DS  M     ++G+E  +  D A+++V+NTC   + A  E V + L     
Sbjct: 22  SLGCPKNLVDSEVMMGELAARGHELTSQPDQAEVLVVNTCSFIDPAKKESVDTILEMAEY 81

Query: 90  LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149
            K+ R ++     ++VAGC+ +   ++I ++ P V+ V+G      +  L E        
Sbjct: 82  KKSGRARK-----LIVAGCLVERYRDDIRKQMPEVDAVIGTNELDSIVALCEDGA-ALSA 135

Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209
               Y   D   R+    G Y       A++ I EGCD  CTFCV+P  RG   SR    
Sbjct: 136 EPAPYLYHDLTPRVLATPGHY-------AYIKIAEGCDHPCTFCVIPQYRGNFRSRRFES 188

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR--LRYTT 267
           VV EA +L   GV E+ L+GQ+   + G+ L G K   ++LL  L++I+   +  +R   
Sbjct: 189 VVAEATRLFGQGVRELNLIGQDTTCF-GEDL-GIKDGLAELLARLAQIETPWQKWVRXLY 246

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
           ++P  ++  L+    +   L+ Y+ +P+Q  S  +LK M R  +   + +++DR+R   P
Sbjct: 247 AYPNKVTQKLLDTIAEYPALVKYIDMPLQHASGAVLKRMKRGASGDIFLKLLDRMRRTIP 306

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV- 386
            + I +  IVGFPGET  DF    D V    +     F YS    +   ++  +VD    
Sbjct: 307 GVTIRTSMIVGFPGETAKDFEELCDFVQAAQFDCLGVFPYSDEDTSASFHLDGKVDGRTI 366

Query: 387 --KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-----KGKLVGRSPWLQSVV 439
             +  +L+ LQ+K+  ++   +   VG    VL+E    E     +G++ G++P +  V 
Sbjct: 367 YRRKRKLMSLQRKIARKR---SRRLVGSETTVLVEGRSPETDLLWQGRMPGQAPEIDGVT 423

Query: 440 L----NSKNHNIGDIIKVRITDVKISTLYGELV 468
           L           G++ ++RIT+     + G L+
Sbjct: 424 LINDFEGGEPRAGEMRRLRITEAHDYDVVGTLL 456


>gi|167725836|ref|ZP_02409072.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Burkholderia
           pseudomallei DM98]
          Length = 453

 Score =  159 bits (403), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 127/470 (27%), Positives = 211/470 (44%), Gaps = 60/470 (12%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC   + DS ++     ++GYE   + D ADL+V+NTC   ++A ++    +G     
Sbjct: 11  SLGCPKALVDSEQIITQLRAEGYEISGTYDGADLVVVNTCGFIDEAVQESLDAIGEA--- 67

Query: 91  KNSRIKEGGDLLVVVAGCVA---QAEGEEILRR-SPIVNVVVGPQTYYRLPELLERARFG 146
               + E G   V+V GC+     A G  ++    P V  V GP     + + +  +   
Sbjct: 68  ----LAENGK--VIVTGCLGAKKSASGSGLIAEVHPKVLAVTGPHAVGEVMQAV-HSHLP 120

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           K          D F  L +   G        A+L I EGC+  C+FC++P  RG  +SR 
Sbjct: 121 KP--------HDPFVDL-VPAAGIKLTPRHYAYLKISEGCNHRCSFCIIPSMRGELVSRP 171

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYSLS 255
           +++V+ EA  L  +GV E+ ++ Q+ +A           W G+ L   K   ++L+ +L 
Sbjct: 172 VAEVMLEAENLFKSGVKELLVISQDTSAYGVDVKYRTGFWNGRPL---KTRMTELVGALG 228

Query: 256 EIKG----LVRLRYTTSHPR------DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
           E+       VRL Y   +P        M+   +K H     ++PYL +P Q     +LK 
Sbjct: 229 ELAAQYGAWVRLHYVYPYPHVDEIIPMMAQAPLKGH-----VLPYLDVPFQHAHPEVLKR 283

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           M R   A    + + + R + PD+ I S FI GFPGETD  F   +D + +    +   F
Sbjct: 284 MKRPANAERVLERVQKWREICPDLTIRSTFIAGFPGETDAQFETLLDFIREAELDRVGCF 343

Query: 366 KYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK 425
            YSP  G   + +   + ++V+  R     +   E   +     VG+ ++VLI++   E 
Sbjct: 344 AYSPVEGASANALDGALPDDVREARRARFMEVAEEVSAARIARKVGKTLKVLIDEVNAEG 403

Query: 426 --GKLVGRSPWLQSVVL------NSKNHNIGDIIKVRITDVKISTLYGEL 467
             G+    +P +  VV        SK + +G+ + V+IT      L+GE+
Sbjct: 404 GIGRTAADAPEIDGVVYVEPAAKASKRYKVGEFVSVKITGADGHDLWGEV 453


>gi|255533406|ref|YP_003093778.1| MiaB-like tRNA modifying enzyme YliG [Pedobacter heparinus DSM
           2366]
 gi|255346390|gb|ACU05716.1| MiaB-like tRNA modifying enzyme YliG [Pedobacter heparinus DSM
           2366]
          Length = 444

 Score =  159 bits (403), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 128/462 (27%), Positives = 219/462 (47%), Gaps = 42/462 (9%)

Query: 22  IVP---QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERV---NSMDDADLIVLNTCHIREK 75
           IVP    +  V + GC  N YDS  +         + V   N M   D++V+NTC   + 
Sbjct: 9   IVPVKKPKINVITLGCSKNTYDSEVLMGQLRGNSMDVVHEANKMGKDDIVVINTCGFIDN 68

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDL-LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYY 134
           A ++    +     L+ S++KE G +  V+V GC+++    E+      V+   G     
Sbjct: 69  AKQESIDTI-----LQYSQLKEEGKVGKVIVTGCLSERYKPELEAEITNVDAFFGTNDLN 123

Query: 135 RLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCV 194
            L   L            +Y  E   ERL      +       A+  I EGC++ C+FC 
Sbjct: 124 NLLHAL----------GANYKHELIGERLLTTPSHF-------AYFKIAEGCNRPCSFCA 166

Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYS 253
           +P  RG  +SR + ++V+EA+ L   G  E+ L+ Q++  +   GLD   K    +LL  
Sbjct: 167 IPLMRGKHVSRDMQELVNEAKILAAGGTKELILIAQDLTYY---GLDIYGKRNLDELLRR 223

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
           LS++ G+  +R   ++P      ++ A  + + +  YL +P+Q  +D +LKSM R  T  
Sbjct: 224 LSDVNGIEWIRLQYAYPSGFPMEILDAMNERENICKYLDMPLQHITDNMLKSMRRGITKQ 283

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
           +   I+++IR   P IA+ +  I G+PGET+ DF   MD V++  + +   F YS    T
Sbjct: 284 KTIDIVNQIRDKVPGIAMRTTLICGYPGETEQDFEEMMDWVEETRFDRLGCFTYSHEEKT 343

Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR-- 431
              ++++ V + +K ER+  + +  +      N   VG+  +VL+++  KE    +GR  
Sbjct: 344 HAHSLVDDVPDEIKQERVDAIMELQQGISYDINQEKVGKTYKVLVDR--KEGAFFIGRTE 401

Query: 432 --SPWLQSVVLNSKNHNI---GDIIKVRITDVKISTLYGELV 468
             SP + + VL   +      G  +KV+I   +   LYG++V
Sbjct: 402 FDSPEVDNEVLIDASTGYAANGSFVKVKIDRAEDFDLYGQIV 443


>gi|255020110|ref|ZP_05292181.1| Ribosomal protein S12p Asp88 methylthiotransferase
           [Acidithiobacillus caldus ATCC 51756]
 gi|254970472|gb|EET27963.1| Ribosomal protein S12p Asp88 methylthiotransferase
           [Acidithiobacillus caldus ATCC 51756]
          Length = 454

 Score =  159 bits (403), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 138/467 (29%), Positives = 208/467 (44%), Gaps = 48/467 (10%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P R  + S GC     D+ R+     ++GY  V    +ADL+++NTC   + A ++    
Sbjct: 11  PPRIGMVSLGCPKAGSDTERLLTRLRAEGYLLVADYAEADLVLVNTCGFIDAAVQESLDA 70

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCV-AQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
           +          I E G   VVV GC+ A+ +GE I R  P V  V GPQ        + R
Sbjct: 71  IAEA-------IDENGR--VVVTGCLGAREQGEFIRRAQPKVLAVTGPQQDGATLAAIHR 121

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
               +          D  + L    G     R   A+L I EGC++ C+FCV+P  RG  
Sbjct: 122 VLPPR---------HDPLQDLVPPQGLRLTPRHY-AYLKIAEGCNQSCSFCVIPSMRGKL 171

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYSL 254
            SR    ++ EA  L+  G  E+ ++ Q+  A+      R    DG   +   +DL  SL
Sbjct: 172 QSREPGDILREAEALVAAGCRELLIISQDTAAYGSDRRYRTAFADGRPTRAHITDLCTSL 231

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
           + +   VRL Y   +P    D L+    D  +L PYL +P+Q GS  +LK+M R   + +
Sbjct: 232 AALGAWVRLHYVYPYPH--VDALVDLMADGKIL-PYLDIPLQHGSPAVLKAMRRPAASDK 288

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
               I R R   PD+ + S FIVGFPGE++ DFR  +D +      +   F YSP  G  
Sbjct: 289 TLDRIARWRRQLPDLTLRSTFIVGFPGESEADFRLLLDFLHAAELDRVGCFSYSPVEGAA 348

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDA----CVGQIIEVLIEKHGKEKGKLVG 430
            + + + V E VK ER    +++  E Q   + A     VGQ   V+++    E G L+ 
Sbjct: 349 ANALADPVPEVVKEER----RQRFMEVQAEISAARLRRRVGQECLVVVDGF-TESGHLMA 403

Query: 431 RS----PWLQSVV----LNSKNHNIGDIIKVRITDVKISTLYGELVV 469
           RS    P +  ++            G  +  RIT      L+G ++ 
Sbjct: 404 RSAAEAPEIDGIIQLDPPTGGRPAAGQRLWARITGSTTHDLHGTVLA 450


>gi|307294310|ref|ZP_07574154.1| MiaB-like tRNA modifying enzyme YliG [Sphingobium chlorophenolicum
           L-1]
 gi|306880461|gb|EFN11678.1| MiaB-like tRNA modifying enzyme YliG [Sphingobium chlorophenolicum
           L-1]
          Length = 460

 Score =  159 bits (403), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 138/464 (29%), Positives = 211/464 (45%), Gaps = 56/464 (12%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC   + DS R+     S GY+       AD++++NTC   + A E+    +G     
Sbjct: 20  SLGCPKALVDSERILTKLRSDGYQMSADYAGADVVLVNTCGFLDSAKEESLEAIGEA--- 76

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               I E G   V+V GC+   E E I  + P V  V G   Y  +   +  A       
Sbjct: 77  ----IAENGR--VIVTGCMGN-EAELIRAKFPQVLAVTGAHQYEAVVNAVHEA------- 122

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
                V + F  L + +GG        ++L I EGC+  C+FC++P  RG   SR +  V
Sbjct: 123 --SPPVPNAFVDL-VPEGGLKLTPRHYSYLKISEGCNHRCSFCIIPSLRGDLASRRVDAV 179

Query: 211 VDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYSLSEIKG 259
           + EA KL+  G  E+ ++ Q+ +A           W+G+ +       +  L  L   +G
Sbjct: 180 LREAEKLVHAGTKELLIISQDTSAYGVDTRHETRQWKGRDVRAHMTDLARELGQLRTAEG 239

Query: 260 ---LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
               VRL Y   +P    D +I    D  +L PYL +P Q  +  +LK+M R   A E +
Sbjct: 240 TPPWVRLHYVYPYPH--VDQVIPLMAD-GLLTPYLDIPFQHAAPNVLKAMKR--PANEAK 294

Query: 317 QIIDRIRSVR---PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
            ++DRIR  R   PDIAI S F+VGFPGET+ DF   +  +D+    +  +F++ P  G 
Sbjct: 295 -VLDRIRKWRDICPDIAIRSSFVVGFPGETEADFDYLLQWLDEAQLDRVGAFRFEPVEGA 353

Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK--EKGKLVGR 431
             +++   V E VK ER   + +K      +   A VG+++ V+I++ G+  E G  VG 
Sbjct: 354 AANDLPGAVPEEVKEERYQRIMEKTAAISAAKLQAKVGRVLPVIIDEVGEADEDGS-VGA 412

Query: 432 SPWLQS--------VVLNSKNHNI--GDIIKVRITDVKISTLYG 465
           +   Q+        V L      +  G I+ V I D     LYG
Sbjct: 413 TARSQADAPEIDGNVFLRDVGEGLAPGSILNVLIEDADEHDLYG 456


>gi|195123861|ref|XP_002006420.1| GI21033 [Drosophila mojavensis]
 gi|193911488|gb|EDW10355.1| GI21033 [Drosophila mojavensis]
          Length = 554

 Score =  159 bits (403), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 132/467 (28%), Positives = 230/467 (49%), Gaps = 42/467 (8%)

Query: 16  QIVDQCIVP--QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIR 73
           + + + ++P  Q+ +VK++GC  N  DS  M     + GY  ++S D+ADL +LN+C ++
Sbjct: 63  KTIYESVIPGTQKVYVKTWGCAHNNSDSEYMAGQLAAYGYN-LSSKDEADLWLLNSCTVK 121

Query: 74  EKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQ-AEGEEILRRSPIVNVVVGPQT 132
             + +         RN   S ++ G    VVVAGCV Q A   + LR   I+ V    Q 
Sbjct: 122 NPSEDT-------FRNEIESGMRNGKH--VVVAGCVPQGAPKSDYLRGLSIIGV----QQ 168

Query: 133 YYRLPELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCT 191
             R+ E++E    G  V +  +  V+ +    + +     RK  +   ++I  GC   CT
Sbjct: 169 IDRVVEVVEETLKGHSVRLLQNKKVQGRRVAGAPLSLPKVRKNPLIEIISINSGCLNQCT 228

Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLL 251
           +C   + RG   S   +++V+ AR+  D G CEI L  ++  A+ G+ +     +  +LL
Sbjct: 229 YCKTKHARGDLASYPPAEIVERARQSFDEGCCEIWLTSEDTGAY-GRDIGS---SLPELL 284

Query: 252 YSLSEI--------KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
           + L E+         G+    Y   H  +++  L         +  +LH+PVQSGSD +L
Sbjct: 285 WQLVEVIPEHCMLRVGMTNPPYILEHLEEVAKVLQHPR-----VYAFLHVPVQSGSDSVL 339

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
             M R +   ++  ++D +RS  P + I++D I GFP ET++DF  TM L  K  +   F
Sbjct: 340 GEMKREYCRKDFEHVVDFLRSRVPGLTIATDIICGFPTETEEDFEETMSLCKKYQFPSLF 399

Query: 364 SFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDAC--VGQIIEVLIEKH 421
             ++ PR GTP + M E++  N+  +R     K+L +   S+       GQ+  VL+ + 
Sbjct: 400 INQFFPRPGTPAAKM-ERIPANLVKKR----TKRLTDLFYSYEPYAGREGQVYTVLVTEI 454

Query: 422 GKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
             +K   VG +   + V+L  +++ +G  ++VRIT     ++  E++
Sbjct: 455 SHDKLHYVGHNKSYEQVLLPMRDNLLGTRVRVRITGTSKFSMMAEIL 501


>gi|29347563|ref|NP_811066.1| putative Fe-S oxidoreductase [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|253572024|ref|ZP_04849428.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|29339463|gb|AAO77260.1| putative Fe-S oxidoreductase [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|251838204|gb|EES66291.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 443

 Score =  159 bits (403), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 115/396 (29%), Positives = 197/396 (49%), Gaps = 28/396 (7%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N  ++  +  +    G       + AD+ V+NTC + E A +K    + R+   
Sbjct: 16  TLGCKLNFSETSTIGKILREAGVRTARKGEKADICVVNTCSVTEMADKKCRQAIHRL--- 72

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL---ERARFGK 147
               +K+     VVV GC AQ +  ++ +    V+VV+G +    L + L    +   G+
Sbjct: 73  ----VKQHPGAFVVVTGCYAQLKPGDVAKIKG-VDVVLGAEQKGDLLQYLGDLHKHEEGE 127

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
               T   +       S  D    R R    FL +Q+GCD FC++C +P+ RG   + ++
Sbjct: 128 AFTTTTKDIRSFSPSCSRGD----RTR---FFLKVQDGCDYFCSYCTIPFARGRSRNGTV 180

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
           + +V++AR+    G  EI L G N+  + GK   GE  TF DL+ +L +++G+ R R ++
Sbjct: 181 ASMVEQARQAAAEGGKEIVLTGVNIGDF-GK-TTGE--TFFDLVKALDQVEGIERYRISS 236

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
             P  ++D +I+        MP+ H+P+QSG D +LK M RR+    +   + +I+ V P
Sbjct: 237 IEPNLLTDEIIEFVSRSRRFMPHFHIPLQSGCDEVLKLMRRRYDTALFASKVKKIKEVMP 296

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM---LEQVDE 384
           D  I  D IVG  GET++ F      +  +   Q   F YS R GT    +   +   ++
Sbjct: 297 DAFIGVDVIVGTRGETEEYFEQAYQFISGLDVTQLHVFSYSERPGTQALKIDYVVSPEEK 356

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
           + +++RLL L     E+  +F    +GQ ++VL+EK
Sbjct: 357 HQRSQRLLTLSD---EKTRAFYTRHIGQTMQVLMEK 389


>gi|296197315|ref|XP_002806724.1| PREDICTED: LOW QUALITY PROTEIN: CDK5 regulatory subunit-associated
           protein 1-like 1-like [Callithrix jacchus]
          Length = 579

 Score =  159 bits (403), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 120/442 (27%), Positives = 210/442 (47%), Gaps = 37/442 (8%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           Q+ +++++GC  N  D   M     + GY+   +  DADL +LN+C ++  A +    F 
Sbjct: 64  QKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDH---FR 120

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             I+  +    K      +V+A CV QA+  +   +      ++G Q   R+ E++E   
Sbjct: 121 NSIKKAQEENKK------IVLAVCVPQAQPRQDYLKG---LSIIGVQQIDRVVEVVEETI 171

Query: 145 FGKRVVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            G  V       +D  +RL  + +D    RK  +   ++I  GC   CT+C   + RG  
Sbjct: 172 KGHSVRLLGQK-KDNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNL 230

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-RGKGLDGEKCTFSDLLYSLSEI---- 257
            S  + ++VD A++    GVCEI L  ++  A+ R  G D        LL+ L E+    
Sbjct: 231 ASYPIDELVDRAKQSFQEGVCEIWLTSEDTGAYGRDIGTD-----LPTLLWKLVEVIPEG 285

Query: 258 ----KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
                G+    Y   H  +M+  L     +   +  +LH+PVQS SD +L  M R +   
Sbjct: 286 AMLRLGMTNPPYILEHLEEMAKIL-----NHPRVYAFLHVPVQSASDSVLMEMKREYCVA 340

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
           ++++++D ++   P I I++D I GFPGETD DF+ T+ LV++  +   F  ++ PR GT
Sbjct: 341 DFKRVVDFLKEKVPGITIATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGT 400

Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSP 433
           P +  +EQV   VK +R   L +       S     +G+  +VL+ +   +    V  + 
Sbjct: 401 PAAK-IEQVPAQVKKQRTKDLSRVF--HSYSPYHHKIGERQQVLVTEESFDSKFYVAHNR 457

Query: 434 WLQSVVLNSKNHNIGDIIKVRI 455
           + + V++      +G +++V I
Sbjct: 458 FYEQVLVPKNPAFMGKMVEVDI 479


>gi|296273084|ref|YP_003655715.1| MiaB-like tRNA modifying protein [Arcobacter nitrofigilis DSM 7299]
 gi|296097258|gb|ADG93208.1| MiaB-like tRNA modifying enzyme [Arcobacter nitrofigilis DSM 7299]
          Length = 421

 Score =  159 bits (403), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 119/436 (27%), Positives = 210/436 (48%), Gaps = 30/436 (6%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+ +F K++GC+ NV+D+  M  M   + +E       A+++V+N+C +   A      +
Sbjct: 8   PKVYF-KTFGCRTNVFDTQVM--MSNLKDFEITQDEKSANVVVINSCTVTNSADSTARGY 64

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +  +  L N          VV  GC    +GE + +    V+ + G      + ELL+  
Sbjct: 65  INSLNKLPNKP-------RVVFTGCGVWTKGETLFKEDK-VDSLFGHSEKENINELLKNE 116

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
                  D ++  E      +IV+    + R   AF+ IQEGCD  C++C++PY RG   
Sbjct: 117 ERFFNAGDLEHIDE------TIVEEFVGKSR---AFIKIQEGCDFRCSYCIIPYVRGDAR 167

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           S S  +++++   L  NG  E  L G NV ++  K    +  + + LL  +S IKG+ R+
Sbjct: 168 SYSEDKILEQITTLASNGFGEFILTGTNVGSYGKK----KHTSLAKLLKKISLIKGVRRI 223

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R  +  P  + D   K   D   +  +LH+ +Q  S ++L+ MNRR+   +  ++ + ++
Sbjct: 224 RMGSIEPIQIDDEF-KEIIDEPFMARHLHIALQHTSKKMLEIMNRRNKVLKDLELFEFLK 282

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
                 A+ +DFIVG PGETD+ ++  ++ + K       +F YS R GTP + M EQV 
Sbjct: 283 D--KGYALGTDFIVGHPGETDELWKEAIENLHKFPLTHVHAFTYSKRDGTPSATMKEQVK 340

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
            ++   R   L   + E+  +F        +EVLIE+  ++ GK +G   +   + + S 
Sbjct: 341 GDISKARYNELVSIIDEKNFNFRKNN-KTTLEVLIEQ--EKNGKYIGLDQYFNQIEIQSN 397

Query: 444 NHNIGDIIKVRITDVK 459
              +GD + +   + K
Sbjct: 398 ADLVGDWVFIENYEAK 413


>gi|89890435|ref|ZP_01201945.1| MiaB family tRNA modifying enzyme [Flavobacteria bacterium BBFL7]
 gi|89517350|gb|EAS20007.1| MiaB family tRNA modifying enzyme [Flavobacteria bacterium BBFL7]
          Length = 438

 Score =  159 bits (403), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 128/448 (28%), Positives = 218/448 (48%), Gaps = 35/448 (7%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V + GC  NVYDS  +     + G + V+  ++ +++V+NTC   + A E+  + +    
Sbjct: 17  VITLGCSKNVYDSEVLMGQLKASGKDVVHE-EEGNIVVINTCGFIDNAKEESVNTILDFV 75

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
             KNS    G    V V+GC+++    ++ +  P V+   G      LP LL       +
Sbjct: 76  ERKNS----GEVDQVFVSGCLSERYKPDLQKEIPDVDQYFGTT---ELPSLL-------K 121

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
            +  DY  E   ER++     Y       A+  I EGCD+ C+FC +P  RG   S  + 
Sbjct: 122 ALGADYKHELIGERVTTTPKNY-------AYFKIAEGCDRPCSFCAIPLMRGGHKSTPIE 174

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYTT 267
            +V EA KL  NGV E+ L+ Q++  +   GLD  +K   +DLL  L +++G+  +R   
Sbjct: 175 HLVIEAEKLAANGVKELILIAQDLTYY---GLDLYKKRRLADLLKELVKVEGIEWIRMHY 231

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
           + P      +++       +  YL +P+Q  S  +LKSM R  T  +   +++  R+  P
Sbjct: 232 AFPTGFPMDVLEVMKSEPKVCNYLDIPLQHISTPVLKSMRRGTTFEKTNALLEDFRATVP 291

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
           ++AI +  IVG+PGET++D++     V    + +   F YS    T    + + V E VK
Sbjct: 292 EMAIRTTLIVGYPGETEEDYQILKQWVKDQRFERMGCFTYSHEENTHAYKLEDDVPEEVK 351

Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQS-VVLNS 442
            ER   + +   +     N   +GQI +V+I++  K     VGR    SP + + V++++
Sbjct: 352 QERANEIMEIQSQISWELNQHKIGQIFKVIIDR--KRGNYFVGRTEFDSPDVDNEVLIDA 409

Query: 443 KNH--NIGDIIKVRITDVKISTLYGELV 468
           + H  ++G  + V IT+ +   LYG  V
Sbjct: 410 EKHYLSVGSFVNVTITEAEDFDLYGTPV 437


>gi|229496636|ref|ZP_04390350.1| conserved hypothetical protein [Porphyromonas endodontalis ATCC
           35406]
 gi|229316533|gb|EEN82452.1| conserved hypothetical protein [Porphyromonas endodontalis ATCC
           35406]
          Length = 445

 Score =  159 bits (403), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 128/411 (31%), Positives = 196/411 (47%), Gaps = 28/411 (6%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           FF  + GC++N  ++  +       G         AD+ ++NTC +   A  K  + + R
Sbjct: 15  FF--TLGCKLNFAETSTIGRQLRELGVVLATEGSSADICIINTCSVTSAADRKDRTLIHR 72

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           +       ++E     VVV GC AQ +GEEIL   P VN+VVG      + E L     G
Sbjct: 73  V-------VRENPHAAVVVMGCYAQLKGEEILN-IPGVNIVVGAGRKSEVVEHLITFFSG 124

Query: 147 KRVVDTD---YSVE----DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           + V  T+   Y+ E     +FE     D   +R R    FL +Q+GC+  CT+C +P  R
Sbjct: 125 EGVTPTNKHHYAGERIHLHRFEEGCSSD---DRTR---HFLKVQDGCNYGCTYCTIPKAR 178

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G+  + S++ +V +A ++   G  EI L G N+  + G+   GE+  F DL+ +L ++ G
Sbjct: 179 GVSRNGSIASLVAQAERVAQEGGKEIVLTGVNIGDF-GRS-TGEQ--FVDLVRALDQVNG 234

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           + R R ++  P  +SD L++        MP+ HLP+QSGSD +L  M RR+    +   +
Sbjct: 235 IERYRISSLEPDLLSDELLEVVAQSRSFMPHWHLPLQSGSDTVLALMKRRYRTQLFSDRL 294

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            RI+ + P   I  D IVG  GET + F  ++  ++     Q   F YS R GTP  ++ 
Sbjct: 295 ARIKEMMPAAFIGVDVIVGMRGETLEFFEESLAYLEGQPVTQLHVFSYSERSGTPALSIP 354

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG 430
             V    K ER   L      +  SF     G+   VL E H    GK+ G
Sbjct: 355 LVVSPEEKKERSKALIDLSNRKLSSFYKEHEGEKRPVLWE-HSCVDGKMYG 404


>gi|218295686|ref|ZP_03496482.1| 2-alkenal reductase [Thermus aquaticus Y51MC23]
 gi|218243845|gb|EED10372.1| 2-alkenal reductase [Thermus aquaticus Y51MC23]
          Length = 224

 Score =  159 bits (403), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 82/210 (39%), Positives = 123/210 (58%)

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           G+ R+R+ TSHP + +D +I+A  +   +  Y+HLPVQSGSDR+L+ M R +    Y + 
Sbjct: 2   GIPRVRFLTSHPVNFTDDIIEAIAETPAITRYIHLPVQSGSDRVLRRMAREYRRAHYLER 61

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           I +IR   PD+ +S+D IVGFPGET++DF+ T+ L D++GY QA+ F YSPR GTP    
Sbjct: 62  IRKIREALPDVVLSTDIIVGFPGETEEDFQETLSLYDEVGYDQAYMFIYSPRPGTPAYKH 121

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSV 438
            + +   VK ERL  L +K +E     N   VG+ +EVL+    KE+G + G       V
Sbjct: 122 FQDLPREVKVERLQRLIEKQKEWSYRRNLEWVGKKVEVLVRGVAKEEGYVQGHDRGNHPV 181

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           ++ +       + +V I       L+GE+V
Sbjct: 182 LIPAHQAPTPGLYQVEIKQATPHLLFGEVV 211


>gi|224417634|ref|ZP_03655640.1| 2-methylthioadenine synthetase [Helicobacter canadensis MIT
           98-5491]
 gi|313141180|ref|ZP_07803373.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Helicobacter canadensis
           MIT 98-5491]
 gi|313130211|gb|EFR47828.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Helicobacter canadensis
           MIT 98-5491]
          Length = 246

 Score =  159 bits (403), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 93/256 (36%), Positives = 141/256 (55%), Gaps = 17/256 (6%)

Query: 25  QRFFVKSYGCQMNVYDSLRM-EDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ ++++ GC MN  DS  +  ++   + Y       +ADLI++NTC +REK  +K++S 
Sbjct: 3   KKLYIETLGCAMNERDSEHIIAELEEKENYTLTEDPKEADLILINTCSVREKPEKKLFSE 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G+   +K    K G      V GC A   G EIL++S  VN V+G +   ++ ++L + 
Sbjct: 63  IGQYAKIKKEDAKIG------VCGCTASHLGNEILKKSKAVNFVLGARNVSKISQILHKD 116

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           R     VD DY      +   +    +N    +   + I  GCDK CT+C+VP+TRG EI
Sbjct: 117 RVA--WVDIDYD-----DSTYVFSSKHNST--LKGMINISIGCDKQCTYCIVPHTRGNEI 167

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-RGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           S     ++ EA+KL+DNG  EI LLGQNVN + R    D  K  F+ LL  +S+I GL R
Sbjct: 168 SIPADLILKEAKKLVDNGTKEILLLGQNVNNYGRRFSNDHRKINFTQLLNEISQINGLER 227

Query: 263 LRYTTSHPRDMSDCLI 278
           +R+T+ HP  M D  I
Sbjct: 228 IRFTSPHPLHMDDEFI 243


>gi|114766736|ref|ZP_01445674.1| MiaB-like tRNA modifying enzyme [Pelagibaca bermudensis HTCC2601]
 gi|114541055|gb|EAU44111.1| MiaB-like tRNA modifying enzyme [Roseovarius sp. HTCC2601]
          Length = 417

 Score =  159 bits (403), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 111/362 (30%), Positives = 171/362 (47%), Gaps = 30/362 (8%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  M+ +    G          D +V+NTC +  +A  K    + R+R  
Sbjct: 8   TLGCRLNAYETEAMKALAEEAGV--------GDAVVVNTCAVTAEAVRKARQEIRRLR-- 57

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG------PQTYYRLPELLERAR 144
                +E  +  V+V GC AQ + +        V+ V+G      P T+  L        
Sbjct: 58  -----RENPEARVIVTGCAAQIDPDSFAAMDE-VDAVIGNSEKMSPDTWAGLSNGF-IGE 110

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
             K  V+   SV +    L  +DG   R R   A++ +Q GCD  CTFC++PY RG   S
Sbjct: 111 TEKVQVNDIMSVTETAGHL--IDGFGTRSR---AYVQVQNGCDHRCTFCIIPYGRGNSRS 165

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
                VVD+ ++L+  G  E+ L G ++ +W G  L G      DL+  +  +  + RLR
Sbjct: 166 VPAGVVVDQIKRLVQKGYNEVVLTGVDLTSW-GADLPGTP-RLGDLVMRILRLTDVPRLR 223

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
            ++    +  D L+ A      LMP+LHL +Q G D ILK M RRH   +  +  +  R 
Sbjct: 224 ISSIDSIEADDNLMLAIASEPRLMPHLHLSLQHGDDLILKRMKRRHLRDDAIRFTEEARR 283

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           +R DI   +D I GFP ET+  F  ++ LV++        F YS R GTP + +  +VD 
Sbjct: 284 LRADITFGADIIAGFPTETEAHFENSLKLVEECSLTWLHVFPYSSRPGTPAAKIPSKVDG 343

Query: 385 NV 386
           N 
Sbjct: 344 NT 345


>gi|300776432|ref|ZP_07086290.1| MiaB family RNA modification enzyme [Chryseobacterium gleum ATCC
           35910]
 gi|300501942|gb|EFK33082.1| MiaB family RNA modification enzyme [Chryseobacterium gleum ATCC
           35910]
          Length = 433

 Score =  159 bits (403), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 130/455 (28%), Positives = 221/455 (48%), Gaps = 41/455 (9%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++  V + GC  NVYDS  +     + G E V+  D  D++V+NTC   + A E+  + +
Sbjct: 9   KKINVVTLGCSKNVYDSEVLMSQLKANGKEVVHE-DRGDIVVINTCGFIDNAKEESINTI 67

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
                 KN     G    V V GC+++    ++++  P V+   G +    LP LL+   
Sbjct: 68  LDYVEAKNR----GEVEKVFVTGCLSERYKPDLIKEIPDVDQYFGTRD---LPVLLKH-- 118

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
                +  DY  E   ERL+     Y       A+L I EGCD+ C+FC +P  RG  +S
Sbjct: 119 -----LGADYKHELVGERLTTTPKHY-------AYLKISEGCDRPCSFCAIPLMRGGHVS 166

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRL 263
             + ++V EA+KL   G  E+ L+ Q++  +   GLD  +K    DLL  L +++G+  +
Sbjct: 167 TPIEKLVSEAQKLAKKGTKELILIAQDLTYY---GLDLYKKRALGDLLKELVKVEGVEWI 223

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R   + P    + ++    +   +  Y+ +P+Q  +  +LKSM R  T  +   ++ + R
Sbjct: 224 RLHYAFPSGFPEDVLDIIREEPKVCNYIDIPLQHINSDLLKSMKRGTTHEKTDALLGKFR 283

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              PD+AI +  IVG+PGET + F+   D V +  + +   F YS    T    + + + 
Sbjct: 284 EKVPDMAIRTTLIVGYPGETKERFQELKDWVREQKFDRLGCFTYSHEENTTAYVLEDDIP 343

Query: 384 ENVK---AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQ 436
           + VK    E ++ LQ ++  ++   N   VG++   + ++  KE    +GR    SP + 
Sbjct: 344 QEVKEARVEEIMELQSQISWEK---NQEKVGKVFRCIFDR--KEGNYFIGRTEYDSPDVD 398

Query: 437 SVVLNSKNH---NIGDIIKVRITDVKISTLYGELV 468
           + VL S      +IG+  +V+IT  +   LYGELV
Sbjct: 399 NTVLVSAEDTYISIGEFAEVKITSAEEFDLYGELV 433


>gi|229496330|ref|ZP_04390050.1| conserved hypothetical protein [Porphyromonas endodontalis ATCC
           35406]
 gi|229316908|gb|EEN82821.1| conserved hypothetical protein [Porphyromonas endodontalis ATCC
           35406]
          Length = 436

 Score =  159 bits (403), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 116/415 (27%), Positives = 208/415 (50%), Gaps = 40/415 (9%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTC-HIREKAAEKVYSFLG 85
           V + GC  N+ DS  +   F + GY   +       +++V+NTC  I     E + + L 
Sbjct: 8   VITLGCSKNLVDSELLMRRFAAAGYSVRHDPKRITGEIVVINTCGFIGAAQEESINTILA 67

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +R  +  RI +     ++V GC+++    ++    P ++ + G   +  L         
Sbjct: 68  FVRAKEEGRIGK-----LIVMGCLSERFRGDLKAEIPEIDALYGKFDWKNL--------- 113

Query: 146 GKRVVD--TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
              V D    ++ E    RL      Y       A++ I EGCD+ C++C +P   G + 
Sbjct: 114 ---VADLGPSFAPETDTARLLTTPKHY-------AYVKISEGCDRGCSYCAIPLITGRQK 163

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR++  +VDE + L+D G  E  L+ Q++ ++ G+ L G K   + LL  LS++ G+ RL
Sbjct: 164 SRTIESLVDEVKTLVDEGCSEFQLIAQDLTSY-GRDLGG-KVLLAPLLERLSDLPGVRRL 221

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R   ++P      ++    + D +  YL + +Q  +D +L+ M R  T  E  +++D IR
Sbjct: 222 RLHYAYPTQFPREILPIMRERDNICKYLDIALQHATDNMLQKMRRNITQLETERLLDEIR 281

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG-SNMLEQV 382
              P IA+ +  IVG PGET+ DFRA  + +++  + +  +F YS  +GT    +  +++
Sbjct: 282 KEVPGIALRTTLIVGHPGETEQDFRALCEFIERRQFERMGAFAYSHEVGTYAYKHYQDEI 341

Query: 383 DENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPW 434
            E VK ER   L+ LQ+ + E   +++ + VG   EVLI++  +E+  +VGR+ +
Sbjct: 342 PEEVKMERLEQLMALQEPIAE---AYSRSLVGTTQEVLIDR--REEEFVVGRTQY 391


>gi|167823898|ref|ZP_02455369.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Burkholderia
           pseudomallei 9]
 gi|167893977|ref|ZP_02481379.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Burkholderia
           pseudomallei 7894]
 gi|167910667|ref|ZP_02497758.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Burkholderia
           pseudomallei 112]
 gi|167918695|ref|ZP_02505786.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Burkholderia
           pseudomallei BCC215]
 gi|226197418|ref|ZP_03792995.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Burkholderia
           pseudomallei Pakistan 9]
 gi|237812521|ref|YP_002896972.1| hypothetical protein GBP346_A2270 [Burkholderia pseudomallei
           MSHR346]
 gi|254197896|ref|ZP_04904318.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Burkholderia
           pseudomallei S13]
 gi|169654637|gb|EDS87330.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Burkholderia
           pseudomallei S13]
 gi|225930797|gb|EEH26807.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Burkholderia
           pseudomallei Pakistan 9]
 gi|237503383|gb|ACQ95701.1| conserved hypothetical protein [Burkholderia pseudomallei MSHR346]
          Length = 463

 Score =  159 bits (403), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 126/465 (27%), Positives = 210/465 (45%), Gaps = 50/465 (10%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC   + DS ++     ++GYE   + D ADL+V+NTC   ++A ++    +G     
Sbjct: 21  SLGCPKALVDSEQIITQLRAEGYEISGTYDGADLVVVNTCGFIDEAVQESLDAIGEA--- 77

Query: 91  KNSRIKEGGDLLVVVAGCVA---QAEGEEILRR-SPIVNVVVGPQTYYRLPELLERARFG 146
               + E G   V+V GC+     A G  ++    P V  V GP     + + +  +   
Sbjct: 78  ----LAENGK--VIVTGCLGAKKSASGSGLIAEVHPKVLAVTGPHAVGEVMQAV-HSHLP 130

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           K          D F  L +   G        A+L I EGC+  C+FC++P  RG  +SR 
Sbjct: 131 KP--------HDPFVDL-VPAAGIKLTPRHYAYLKISEGCNHRCSFCIIPSMRGELVSRP 181

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYSLS 255
           +++V+ EA  L  +GV E+ ++ Q+ +A           W G+ L   K   ++L+ +L 
Sbjct: 182 VAEVMLEAENLFKSGVKELLVISQDTSAYGVDVKYRTGFWNGRPL---KTRMTELVGALG 238

Query: 256 EIKG----LVRLRYTTSHPRDMSDCLIKAHGDLD-VLMPYLHLPVQSGSDRILKSMNRRH 310
           E+       VRL Y   +P       + A G L   ++PYL +P Q     +LK M R  
Sbjct: 239 ELAAQYGAWVRLHYVYPYPHVDEIIPMMAQGPLKGHVLPYLDVPFQHAHPEVLKRMKRPA 298

Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370
            A    + + + R + PD+ I S FI GFPGETD  F   +D + +    +   F YSP 
Sbjct: 299 NAERVLERVQKWREICPDLTIRSTFIAGFPGETDAQFETLLDFIREAELDRVGCFAYSPV 358

Query: 371 LGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKL 428
            G   + +   + ++V+  R     +   E   +     +G+ ++VLI++   E   G+ 
Sbjct: 359 EGASANALDGALPDDVREARRARFMEVAEEVSAARIARKIGKTLKVLIDEVNAEGGIGRT 418

Query: 429 VGRSPWLQSVVL------NSKNHNIGDIIKVRITDVKISTLYGEL 467
              +P +  VV        SK + +G+ + V+IT      L+GE+
Sbjct: 419 AADAPEIDGVVYVEPAAKASKRYKVGEFVSVKITGADGHDLWGEV 463


>gi|49476310|ref|YP_034351.1| hypothetical protein BH16610 [Bartonella henselae str. Houston-1]
 gi|49239118|emb|CAF28422.1| hypothetical protein BH16610 [Bartonella henselae str. Houston-1]
          Length = 427

 Score =  159 bits (402), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 114/376 (30%), Positives = 184/376 (48%), Gaps = 41/376 (10%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           ++GC++N Y+S  +     S G +++   D A  I+ NTC +  +A  +    + + R  
Sbjct: 7   TFGCRLNSYESEIIRKESTSSGLDQLK--DGA--IIFNTCAVTAEAVRQAKQAIRKAR-- 60

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG------PQTYYRLPELLERAR 144
                +E     ++V GC AQ E +     +  V++V+G        +Y +LP+      
Sbjct: 61  -----RENPHARIIVTGCAAQTEAQNFASMTE-VDLVLGNEDKLHAHSYRQLPD------ 108

Query: 145 FG-----KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           FG     K  ++    VE     +  V     R R   AF+ +Q GCD  CTFC++PY R
Sbjct: 109 FGINHSEKLRINNIMEVEKIASHM--VSAMEERTR---AFVQVQNGCDHRCTFCIIPYGR 163

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS-LSEIK 258
           G   S  +  V+++ +KL  NG+ E+ L G ++ ++ G  L G K T   L  + L  I 
Sbjct: 164 GPSRSVPMGSVIEQIKKLTGNGIQEVVLTGVDLTSY-GHDLPG-KATLGKLTSAILHHIP 221

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
            L RLR ++    +  + LI        +MP+LHL +Q+G + ILK M RRH      Q 
Sbjct: 222 DLPRLRLSSIDSIEADEELINLLAYEKRIMPHLHLSLQAGDNMILKRMKRRHLREHAIQF 281

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
              +R+ RP +   +D I GFP ET++ F+ ++ LV+         F +SPR GTP + M
Sbjct: 282 CQDLRAKRPTMVYGADLIAGFPTETEEMFQNSLSLVNDCHLTHLHVFPFSPREGTPAARM 341

Query: 379 LEQVDENV---KAERL 391
             Q++  +   +AERL
Sbjct: 342 -PQINRKIIKMRAERL 356


>gi|313672441|ref|YP_004050552.1| SSU ribosomal protein s12p methylthiotransferase [Calditerrivibrio
           nitroreducens DSM 19672]
 gi|312939197|gb|ADR18389.1| SSU ribosomal protein S12P methylthiotransferase [Calditerrivibrio
           nitroreducens DSM 19672]
          Length = 433

 Score =  159 bits (402), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 112/421 (26%), Positives = 198/421 (47%), Gaps = 21/421 (4%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC-HIREKAAEKVYSFLGRIRN 89
           S GC  N  D   +       G+E V  +  AD IV+NTC  ++   +E V + L    N
Sbjct: 7   SLGCPKNQTDLEYLIGDLVVDGFEVVTDIKKADAIVVNTCGFLKSAVSEAVENILDVAYN 66

Query: 90  LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149
            K           ++V+GC+ +   +EI +  P V+   G  T   + E L++ +  ++V
Sbjct: 67  KKKK-------AKLIVSGCMVERYKDEIAKELPEVDFWTGVGTLKEIAEYLKKGKLTRKV 119

Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209
            +  +  E++     +V+  Y       A+L I EGC+  C++C +P+ RG  ISR    
Sbjct: 120 EEKSFYGENRI----LVNHSY------YAYLKISEGCNNRCSYCTIPFIRGNLISRPRES 169

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSH 269
           ++ EA  L+ NGV E+ ++ Q+   +   G+D  +    +LL  L  + G  ++R    +
Sbjct: 170 IIKEAEDLVKNGVKELIIISQDTTKY---GIDKGRSELIELLTDLVMVDGEFKIRLLYLN 226

Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329
           P  +S+ L+    + D ++ Y  +PVQ   D ILK MNR+  + + + + + IRS  P+ 
Sbjct: 227 PDGVSNELVDFVSNQDKMIKYFEIPVQHIDDEILKKMNRKSDSRKIKSVFEYIRSRIPEA 286

Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAE 389
            I + FIVGFPGE D  F   ++ V++     A  F YS   GT   N          ++
Sbjct: 287 FIRTTFIVGFPGEDDVSFEKMVEFVEEYKPDFAGFFPYSREEGTKAYNFEGSCKSREISK 346

Query: 390 RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGD 449
           R+  +QK  ++  +          I + +E+  +E   L+      Q+  ++ K + +G 
Sbjct: 347 RISRIQKIQKKNTLERLKRLKKDTITLYVEQPSEENPFLLEGRAEFQAPEIDGKAYILGG 406

Query: 450 I 450
           +
Sbjct: 407 V 407


>gi|167569764|ref|ZP_02362638.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Burkholderia
           oklahomensis C6786]
          Length = 456

 Score =  159 bits (402), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 129/477 (27%), Positives = 216/477 (45%), Gaps = 61/477 (12%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P   FV S GC   + DS ++     ++GYE   + D ADL+V+NTC   ++A ++    
Sbjct: 8   PTVGFV-SLGCPKALVDSEQIITQLRAEGYEISGTYDGADLVVVNTCGFIDEAVQESLDA 66

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVA---QAEGEEILRR-SPIVNVVVGPQTYYRLPEL 139
           +G         + E G   V+V GC+     A G  ++    P V  V GP     + + 
Sbjct: 67  IGEA-------LAENGK--VIVTGCLGAKKSASGSGLIEEVHPKVLAVTGPHAVGEVMQA 117

Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           +  +   K          D F  L +   G        A+L I EGC+  C+FC++P  R
Sbjct: 118 V-HSHLPKP--------HDPFVDL-VPAAGIKLTPRHYAYLKISEGCNHRCSFCIIPSMR 167

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFS 248
           G  +SR +++V+ EA  L  +GV E+ ++ Q+ +A           W G+ L   K   +
Sbjct: 168 GDLVSRPVAEVMLEAENLFKSGVKELLVISQDTSAYGVDVKYRTGFWNGRPL---KTRMT 224

Query: 249 DLLYSLSEIKG----LVRLRYTTSHPR------DMSDCLIKAHGDLDVLMPYLHLPVQSG 298
           +L+ +L E+       VRL Y   +P        M++  +K H     ++PYL +P Q  
Sbjct: 225 ELVGALGELAAQYGAWVRLHYVYPYPHVDEIIPMMAEGPLKGH-----VLPYLDVPFQHA 279

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
              +LK M R   A +  + + + R + PD+ I S FI GFPGET+  F   +D + +  
Sbjct: 280 HPDVLKRMKRPANAEKVLERVQKWREICPDLTIRSTFIAGFPGETEAQFETLLDFIREAE 339

Query: 359 YAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI 418
             +   F YSP  G   + +   + ++V+  R     +       +  +  VG+ ++VLI
Sbjct: 340 LDRVGCFAYSPVEGASANELDGALPDDVREARRARFMEVAEAVSAARIERKVGKTLKVLI 399

Query: 419 EKHGKEK--GKLVGRSPWLQSVVL------NSKNHNIGDIIKVRITDVKISTLYGEL 467
           ++   E   G+    +P +  VV        SK + +GD + V+IT      L+GE+
Sbjct: 400 DEVNAEGGIGRTAADAPEIDGVVYVEPATKASKRYKVGDFVSVKITGADGHDLWGEV 456


>gi|126727809|ref|ZP_01743639.1| MiaB-like tRNA modifying enzyme [Rhodobacterales bacterium
           HTCC2150]
 gi|126702936|gb|EBA02039.1| MiaB-like tRNA modifying enzyme [Rhodobacterales bacterium
           HTCC2150]
          Length = 422

 Score =  159 bits (402), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 114/397 (28%), Positives = 193/397 (48%), Gaps = 32/397 (8%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  M+++  + G E        + +V+NTC +  +A  K    + ++R  
Sbjct: 8   TLGCRLNSYETEAMKELSAAAGLE--------NAVVVNTCAVTSEAVRKARQEIRKLR-- 57

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ-----TYYRL---PELLER 142
                ++  D  ++V GC AQ E E       +  V+   +     T+ ++   P+ +  
Sbjct: 58  -----RDNPDAKLIVTGCAAQTEPETFASMDEVDQVIGNTEKMLGDTWTKISKGPDFI-- 110

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
               K  VD   SV +    L  +DG   R R   A++ +Q GCD  CTFC++P+ RG  
Sbjct: 111 GDVEKVQVDDIMSVTETAGHL--IDGFGTRSR---AYVQVQNGCDHRCTFCIIPFGRGNS 165

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            S +   VV++ ++L+  G  EI L G ++ +W G  L GE      ++  L  +  L R
Sbjct: 166 RSVAAGVVVEQIKRLVGKGFNEIVLTGVDLTSW-GADLPGEPKLGDLVMRILKLVPDLPR 224

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LR ++    ++ + L++A      LMP+LHL +Q+G D ILK M RRH   +  +  +  
Sbjct: 225 LRISSIDSIEVDENLLQAIATEKRLMPHLHLSLQAGDDMILKRMKRRHLRDDAIEFCETA 284

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           + +RPD+   +D I GFP ET+  F  ++ +V          F YS R GTP + M  QV
Sbjct: 285 KKLRPDMTFGADIIAGFPTETEAMFENSLAMVADCDLTWLHVFPYSVRQGTPAARM-PQV 343

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419
           +  +  ER   L+     +        VG++ +VL+E
Sbjct: 344 NGALIKERAARLRAAGDIKVAEHLGHQVGKVHQVLME 380


>gi|319957025|ref|YP_004168288.1| miab-like tRNA modifying enzyme [Nitratifractor salsuginis DSM
           16511]
 gi|319419429|gb|ADV46539.1| MiaB-like tRNA modifying enzyme [Nitratifractor salsuginis DSM
           16511]
          Length = 421

 Score =  159 bits (402), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 114/420 (27%), Positives = 218/420 (51%), Gaps = 31/420 (7%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           Q+ + K++GC+ N +D+  M  M   + +E      +AD++V+N+C +   A   V  ++
Sbjct: 4   QKVYFKTFGCRTNQFDTQVM--MSRLKDFELCLEESEADVVVVNSCTVTNGADATVRGYI 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             +R       +   ++ VV+AGC A ++GEE+L++   V+ V+G     R+ E+L R  
Sbjct: 62  NALR-------RRHPEVRVVLAGCGAHSKGEELLKQGK-VHGVMGHSEKERINEILHRPE 113

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
               + D ++         ++V     + R   AF+ IQEGC+  C++C++P+ RG   S
Sbjct: 114 GFYEIGDLEHVDS------TVVSEFVGKSR---AFIKIQEGCNFRCSYCIIPFVRGNARS 164

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAW-RGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
               Q++++ R+L  NG  E  L G NV ++ R +G      + + LL  +S+I+G+ R+
Sbjct: 165 HDEEQILEQVRRLAANGFGEFILTGTNVGSYGRDRG-----TSLAKLLKRMSQIRGVRRI 219

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R  +  P  +    ++   +   +  +LH+ +Q  SDR+L+ MNRR+   E  ++ + + 
Sbjct: 220 RIGSLEPIQIDAEFMELLAE-PWMARHLHIALQHTSDRMLELMNRRNRYPEDLKLFETLA 278

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM-LEQV 382
           +     A+ +DFIVG PGE + ++R  M+ +D +      +F YSPR GT  +++ L + 
Sbjct: 279 A--KGYALGTDFIVGHPGEGEAEWREAMERIDVLPLTHIHAFTYSPREGTASTSLELPRP 336

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
             +V   R   L + +R++ + F  +   + + VL+E   ++ G   G   +   V++ S
Sbjct: 337 RGDVAKARHRELTEAIRQKNLRFRRSH-NEGLTVLVETQ-RQDGLYQGFDQYYNKVLIES 394


>gi|265766970|ref|ZP_06094799.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacteroides sp. 2_1_16]
 gi|263253347|gb|EEZ24823.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacteroides sp. 2_1_16]
          Length = 439

 Score =  159 bits (402), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 114/393 (29%), Positives = 194/393 (49%), Gaps = 22/393 (5%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N  ++  +  +    G       + ADL ++NTC + E A +K    + R+   
Sbjct: 16  TLGCKLNFSETSTIGKILREAGVRTARKGEKADLCIVNTCSVTEMADKKCRQAIHRL--- 72

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               +K+     VVV GC AQ +  ++ +    V+VV+G +    L + L      K   
Sbjct: 73  ----VKQHPGAFVVVTGCYAQLKPGDVAKIEG-VDVVLGAEQKKDLLQYL--GDLHKHEG 125

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
              Y+   K   +       +R      FL +Q+GCD FC++C +P+ RG   + +++ +
Sbjct: 126 GEAYTTATK--DIRSFAPSCSRGDRTRFFLKVQDGCDYFCSYCTIPFARGRSRNGTIASL 183

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270
           V++AR+    G  EI L G N+  + GK   GE  TF DL+ +L  ++G+ R R ++  P
Sbjct: 184 VEQARQAAAEGGKEIVLTGVNIGDF-GKST-GE--TFFDLVKALDRVEGIERYRISSIEP 239

Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330
             ++D +I+        MP+ H+P+QSGSD +L+ M RR+    +   I +I+ V PD  
Sbjct: 240 NLLTDEIIEYVSRSRSFMPHFHIPLQSGSDEVLQLMRRRYGTELFASKIAKIKEVMPDAF 299

Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG---SNMLEQVDENVK 387
           I  D IVG  GET   F    + +  +   Q   F YS R GT      +++   +++ +
Sbjct: 300 IGVDVIVGTRGETAGYFEKAYEFIHGLDVTQLHVFSYSERPGTQALKIDHVVTPEEKHQR 359

Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
           ++RLL L     E+  +F    +GQ + VL+EK
Sbjct: 360 SQRLLALSD---EKTKAFYARHIGQTMPVLMEK 389


>gi|254463246|ref|ZP_05076662.1| MiaB-like tRNA modifying enzyme [Rhodobacterales bacterium
           HTCC2083]
 gi|206679835|gb|EDZ44322.1| MiaB-like tRNA modifying enzyme [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 417

 Score =  159 bits (402), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 107/353 (30%), Positives = 172/353 (48%), Gaps = 27/353 (7%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  M+++  S G +        + +++NTC +  +A  K    + ++R  
Sbjct: 8   TLGCRLNAYETEAMKELSQSAGLQ--------NAVIVNTCAVTAEAVRKARQEIRKLR-- 57

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL--LERARFGKR 148
                +E  +  ++V GC AQ E E        V+ V+G     R      L     G+ 
Sbjct: 58  -----RENPEARLIVTGCAAQTEPETFTAMGE-VDAVIGNTEKMRADTWQGLAADFIGET 111

Query: 149 ---VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
               VD   SV +    L  +DG   R R   A++ +Q GCD  CTFC++PY RG   S 
Sbjct: 112 EAVQVDDIMSVTETAGHL--IDGFGTRSR---AYVQVQNGCDHRCTFCIIPYGRGNSRSV 166

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
               VV++ ++L+  G  E+ L G ++ +W G  L  E      ++  L  +  L RLR 
Sbjct: 167 PAGVVVEQIKRLVGKGYNEVVLTGVDLTSW-GADLPVEPKLGDLVMRILKLVPDLPRLRI 225

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
           ++    ++ D L++A      LMP+LHL +Q+G D ILK M RRH   +     +  + +
Sbjct: 226 SSIDSIEVDDNLMQAIATEPRLMPHLHLSLQAGDDMILKRMKRRHLRDDAIAFCEEAKRL 285

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           RPD+   +D I GFP ETD  F  ++ L+++        F YSPR GTP + M
Sbjct: 286 RPDMTYGADIIAGFPTETDTMFENSLKLIEECDLTWLHVFPYSPRNGTPAAKM 338


>gi|253566270|ref|ZP_04843724.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|251945374|gb|EES85812.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|301164592|emb|CBW24151.1| conserved hypothetical protein [Bacteroides fragilis 638R]
          Length = 439

 Score =  159 bits (402), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 114/393 (29%), Positives = 194/393 (49%), Gaps = 22/393 (5%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N  ++  +  +    G       + ADL ++NTC + E A +K    + R+   
Sbjct: 16  TLGCKLNFSETSTIGKILREAGVRTARKGEKADLCIVNTCSVTEMADKKCRQAIHRL--- 72

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               +K+     VVV GC AQ +  ++ +    V+VV+G +    L + L      K   
Sbjct: 73  ----VKQHPGAFVVVTGCYAQLKPGDVAKIEG-VDVVLGAEQKKDLLQYL--GDLHKHEG 125

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
              Y+   K   +       +R      FL +Q+GCD FC++C +P+ RG   + +++ +
Sbjct: 126 GEAYTTATK--DIRSFAPSCSRGDRTRFFLKVQDGCDYFCSYCTIPFARGRSRNGTIASL 183

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270
           V++AR+    G  EI L G N+  + GK   GE  TF DL+ +L  ++G+ R R ++  P
Sbjct: 184 VEQARQAAAEGGKEIVLTGVNIGDF-GKST-GE--TFFDLVKALDRVEGIERYRISSIEP 239

Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330
             ++D +I+        MP+ H+P+QSGSD +L+ M RR+    +   I +I+ V PD  
Sbjct: 240 NLLTDEIIEYVSRSRSFMPHFHIPLQSGSDEVLQLMRRRYGTELFASKIAKIKEVMPDAF 299

Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG---SNMLEQVDENVK 387
           I  D IVG  GET   F    + +  +   Q   F YS R GT      +++   +++ +
Sbjct: 300 IGVDVIVGTRGETAGYFEKAYEFIHGLDVTQLHVFSYSERPGTQALKIDHVVTPEEKHQR 359

Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
           ++RLL L     E+  +F    +GQ + VL+EK
Sbjct: 360 SQRLLALSD---EKTKAFYARHIGQTMPVLMEK 389


>gi|290953319|ref|ZP_06557940.1| MiaB family tRNA modification protein [Francisella tularensis
           subsp. holarctica URFT1]
          Length = 413

 Score =  159 bits (402), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 109/357 (30%), Positives = 171/357 (47%), Gaps = 38/357 (10%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           +P+  FV S GC  N+ DS R+     ++GY+ V+S D+AD++++NTC     A ++   
Sbjct: 4   IPKIGFV-SLGCPKNLVDSERIITKLKAEGYDLVDSYDNADMVIVNTCGFLNSAIDESLE 62

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +G         I E G +LV   GC+   + + I  + P V  + GPQ Y  L   +E 
Sbjct: 63  VIGE-------AIAENGKVLV--TGCLGN-KADLIKEKHPEVLSITGPQDYENL---IEA 109

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
                 +   D+      + + +    Y       ++L I EGC+  CTFC++P  RG  
Sbjct: 110 VHTHAPIFANDFVSLVPPQGIKLTPRHY-------SYLKISEGCNNTCTFCIIPDIRGKL 162

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLL 251
            SRS+  ++ EA KL + GV E+ ++ Q+ +A           W  K     +    DL 
Sbjct: 163 KSRSIDNIMKEAEKLKNAGVKELLVISQDTSAYGVDIKYKSGIWNNKEY---QSNIIDLA 219

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
            +L ++    RL Y   +P       + A G +   +PYL + +Q  S  +LK M R   
Sbjct: 220 TALGDLDMWTRLHYVYPYPHVDKIVPLMAQGKI---LPYLDVSLQHSSPEVLKRMKRPAH 276

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
             +    I++ R + PDI ISS FIVGFPGET+ DF+  +D  +K    +   FKYS
Sbjct: 277 TQKTLDRINKWRDICPDITISSTFIVGFPGETEADFKHLLDFAEKAQLDRVGCFKYS 333


>gi|295313452|ref|ZP_06804054.1| ribosomal protein S12 methylthiotransferase [Francisella tularensis
           subsp. holarctica URFT1]
          Length = 419

 Score =  159 bits (401), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 109/357 (30%), Positives = 171/357 (47%), Gaps = 38/357 (10%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           +P+  FV S GC  N+ DS R+     ++GY+ V+S D+AD++++NTC     A ++   
Sbjct: 10  IPKIGFV-SLGCPKNLVDSERIITKLKAEGYDLVDSYDNADMVIVNTCGFLNSAIDESLE 68

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +G         I E G +LV   GC+   + + I  + P V  + GPQ Y  L   +E 
Sbjct: 69  VIGE-------AIAENGKVLV--TGCLGN-KADLIKEKHPEVLSITGPQDYENL---IEA 115

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
                 +   D+      + + +    Y       ++L I EGC+  CTFC++P  RG  
Sbjct: 116 VHTHAPIFANDFVSLVPPQGIKLTPRHY-------SYLKISEGCNNTCTFCIIPDIRGKL 168

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLL 251
            SRS+  ++ EA KL + GV E+ ++ Q+ +A           W  K     +    DL 
Sbjct: 169 KSRSIDNIMKEAEKLKNAGVKELLVISQDTSAYGVDIKYKSGIWNNKEY---QSNIIDLA 225

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
            +L ++    RL Y   +P       + A G +   +PYL + +Q  S  +LK M R   
Sbjct: 226 TALGDLDMWTRLHYVYPYPHVDKIVPLMAQGKI---LPYLDVSLQHSSPEVLKRMKRPAH 282

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
             +    I++ R + PDI ISS FIVGFPGET+ DF+  +D  +K    +   FKYS
Sbjct: 283 TQKTLDRINKWRDICPDITISSTFIVGFPGETEADFKHLLDFAEKAQLDRVGCFKYS 339


>gi|115314257|ref|YP_762980.1| 2-methylthioadenine synthetase [Francisella tularensis subsp.
           holarctica OSU18]
 gi|156501726|ref|YP_001427791.1| ribosomal protein S12 methylthiotransferase [Francisella tularensis
           subsp. holarctica FTNF002-00]
 gi|167009215|ref|ZP_02274146.1| hypothetical protein Ftulh_00385 [Francisella tularensis subsp.
           holarctica FSC200]
 gi|254367133|ref|ZP_04983166.1| 2-methylthioadenine synthetase [Francisella tularensis subsp.
           holarctica 257]
 gi|122325707|sp|Q0BNJ1|RIMO_FRATO RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|238065371|sp|A7NA32|RIMO_FRATF RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|115129156|gb|ABI82343.1| probable 2-methylthioadenine synthetase [Francisella tularensis
           subsp. holarctica OSU18]
 gi|134252956|gb|EBA52050.1| 2-methylthioadenine synthetase [Francisella tularensis subsp.
           holarctica 257]
 gi|156252329|gb|ABU60835.1| tRNA modifying enzyme, MiaB family [Francisella tularensis subsp.
           holarctica FTNF002-00]
          Length = 431

 Score =  159 bits (401), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 109/357 (30%), Positives = 171/357 (47%), Gaps = 38/357 (10%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           +P+  FV S GC  N+ DS R+     ++GY+ V+S D+AD++++NTC     A ++   
Sbjct: 4   IPKIGFV-SLGCPKNLVDSERIITKLKAEGYDLVDSYDNADMVIVNTCGFLNSAIDESLE 62

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +G         I E G +LV   GC+   + + I  + P V  + GPQ Y     L+E 
Sbjct: 63  VIGE-------AIAENGKVLV--TGCLGN-KADLIKEKHPEVLSITGPQDY---ENLIEA 109

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
                 +   D+      + + +    Y       ++L I EGC+  CTFC++P  RG  
Sbjct: 110 VHTHAPIFANDFVSLVPPQGIKLTPRHY-------SYLKISEGCNNTCTFCIIPDIRGKL 162

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLL 251
            SRS+  ++ EA KL + GV E+ ++ Q+ +A           W  K     +    DL 
Sbjct: 163 KSRSIDNIMKEAEKLKNAGVKELLVISQDTSAYGVDIKYKSGIWNNKEY---QSNIIDLA 219

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
            +L ++    RL Y   +P       + A G +   +PYL + +Q  S  +LK M R   
Sbjct: 220 TALGDLDMWTRLHYVYPYPHVDKIVPLMAQGKI---LPYLDVSLQHSSPEVLKRMKRPAH 276

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
             +    I++ R + PDI ISS FIVGFPGET+ DF+  +D  +K    +   FKYS
Sbjct: 277 TQKTLDRINKWRDICPDITISSTFIVGFPGETEADFKHLLDFAEKAQLDRVGCFKYS 333


>gi|163787983|ref|ZP_02182429.1| 2-methylthioadenine synthetase [Flavobacteriales bacterium ALC-1]
 gi|159876303|gb|EDP70361.1| 2-methylthioadenine synthetase [Flavobacteriales bacterium ALC-1]
          Length = 406

 Score =  159 bits (401), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 125/422 (29%), Positives = 209/422 (49%), Gaps = 44/422 (10%)

Query: 61  DADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDL-LVVVAGCVAQAEGEEILR 119
           + +++V+NTC     A E+  + +     L   + KE GD+  V V GC+++    ++ +
Sbjct: 16  EGNVVVINTCGFINNAKEESVNTI-----LHYMQKKEEGDVDKVFVTGCLSERYKPDLEK 70

Query: 120 RSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAF 179
             P V+   G      LP LL       + +  DY  E   ERL+     Y       A+
Sbjct: 71  EIPNVDQYFGTT---ELPGLL-------KALGADYKHELIGERLTTTPKNY-------AY 113

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
           L I EGCD+ C+FC +P  RG   S  + ++V EA KL  NGV E+ L+ Q++  +   G
Sbjct: 114 LKIAEGCDRPCSFCAIPLMRGKHKSTPIEEIVIEAEKLAANGVKELILIAQDLTYY---G 170

Query: 240 LD-GEKCTFSDLLYSLSEIKGL--VRLRYT--TSHPRDMSDCLIKAHGDLDVLMPYLHLP 294
           LD  +K   ++LL +L +++G+  +RL Y   T  P D+ D + +       +  YL +P
Sbjct: 171 LDLYKKRNLAELLENLVKVEGIDWIRLHYAFPTGFPMDVLDVMNREPK----ICNYLDIP 226

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           +Q  SD ILKSM R  T  +  ++++  R+  P++ I +  IVG+PGET +DF    D V
Sbjct: 227 LQHISDSILKSMRRGTTKEKTTKLLNEFRAKVPEMTIRTTLIVGYPGETQEDFETLRDWV 286

Query: 355 DKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQII 414
            ++ + +   F YS    T   N+ + V E VK +R   + +   +     N A +GQ  
Sbjct: 287 KEMRFERLGCFTYSHEENTHAYNLEDDVPEEVKMQRANEIMEIQSQISWELNQAKIGQEF 346

Query: 415 EVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHN-------IGDIIKVRITDVKISTLYGEL 467
           +V+I++  KE    VGR+ +    V N    +        G+   +++ + +   LYGE+
Sbjct: 347 KVVIDR--KEGNYFVGRTEYDSPDVDNEVRIDATETYLKTGEFATIKVIEAEDFDLYGEV 404

Query: 468 VV 469
           V+
Sbjct: 405 VL 406


>gi|126440905|ref|YP_001059197.1| putative tRNA modifying protein [Burkholderia pseudomallei 668]
 gi|238065309|sp|A3NA26|RIMO_BURP6 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|126220398|gb|ABN83904.1| MiaB-like protein [Burkholderia pseudomallei 668]
          Length = 463

 Score =  159 bits (401), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 126/465 (27%), Positives = 209/465 (44%), Gaps = 50/465 (10%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC   + DS ++     ++GYE   + D ADL+V+NTC   ++A ++    +G     
Sbjct: 21  SLGCPKALVDSEQIITQLRAEGYEISGTYDGADLVVVNTCGFIDEAVQESLDAIGEA--- 77

Query: 91  KNSRIKEGGDLLVVVAGCVA---QAEGEEILRR-SPIVNVVVGPQTYYRLPELLERARFG 146
               + E G   V+V GC+     A G  ++    P V  V GP     + + +  +   
Sbjct: 78  ----LAENGK--VIVTGCLGAKKSASGSGLIAEVHPKVLAVTGPHAVGEVMQAV-HSHLP 130

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           K          D F  L +   G        A+L I EGC+  C+FC++P  RG  +SR 
Sbjct: 131 KP--------HDPFVDL-VPAAGIKLTPRHYAYLKISEGCNHRCSFCIIPSMRGELVSRP 181

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYSLS 255
           +++V+ EA  L  +GV E+ ++ Q+ +A           W G+ L   K   ++L+ +L 
Sbjct: 182 VAEVMLEAENLFKSGVKELLVISQDTSAYGVDVKYRTGFWNGRPL---KTRMTELVGALG 238

Query: 256 EIKG----LVRLRYTTSHPRDMSDCLIKAHGDLD-VLMPYLHLPVQSGSDRILKSMNRRH 310
           E+       VRL Y   +P       + A G L   ++PYL +P Q     +LK M R  
Sbjct: 239 ELAAQYGAWVRLHYVYPYPHVDEIIPMMAQGPLKGHVLPYLDVPFQHAHPEVLKRMKRPA 298

Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370
            A    + + + R + PD+ I S FI GFPGETD  F   +D +      +   F YSP 
Sbjct: 299 NAERVLERVQKWREICPDLTIRSTFIAGFPGETDAQFETLLDFIRDAELDRVGCFAYSPV 358

Query: 371 LGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKL 428
            G   + +   + ++V+  R     +   E   +     +G+ ++VLI++   E   G+ 
Sbjct: 359 EGASANALDGALPDDVREARRARFMEVAEEVSAARIARKIGKTLKVLIDEVNAEGGIGRT 418

Query: 429 VGRSPWLQSVVL------NSKNHNIGDIIKVRITDVKISTLYGEL 467
              +P +  VV        SK + +G+ + V+IT      L+GE+
Sbjct: 419 AADAPEIDGVVYVEPAAKASKRYKVGEFVSVKITGADSHDLWGEV 463


>gi|298712341|emb|CBJ33133.1| n/a [Ectocarpus siliculosus]
          Length = 442

 Score =  159 bits (401), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 100/292 (34%), Positives = 156/292 (53%), Gaps = 44/292 (15%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY----- 81
           FF+++YGCQMNV D+  +  +    G+   +++++A +++ NTC IRE+A  KV+     
Sbjct: 150 FFIETYGCQMNVSDTEVVRAILLKAGFSEADTLEEAGVVLANTCAIRERAEGKVWDRLKF 209

Query: 82  -SFLGRIRNLKNSRIKE------GG--DLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT 132
            S + R R L  +   +      GG  DL + V GC+A+   E +L R   V++V GP  
Sbjct: 210 FSSIRRRRKLAATHAAKARQPVPGGLSDLKIGVLGCMAERLKESLLERG-GVDLVTGPDA 268

Query: 133 YYRLPELLE---RARFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCD 187
           Y  LP LLE    +  G+    V+   S ++ +  ++ V    N    V+AF++I  GC+
Sbjct: 269 YRDLPRLLELVGTSGSGESTGAVNVQLSQDETYADIAPVRLVNNTSEAVSAFISIMRGCN 328

Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK--------- 238
             CT+C+VP+TRG E SR L  +VDEA +L D+GV E+TLLGQNVN++  +         
Sbjct: 329 NMCTYCIVPFTRGRERSRPLGSIVDEAMRLRDDGVREVTLLGQNVNSYHDRSEASTALYN 388

Query: 239 GLD---------------GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSD 275
           G D               G    F++LL  ++     VR+R+T+ HP+D  D
Sbjct: 389 GTDYTTTAGFGNTFRSRGGAGAYFAELLAEVASAVPEVRVRFTSPHPKDFPD 440


>gi|74003946|ref|XP_849433.1| PREDICTED: similar to CDK5 regulatory subunit associated protein
           1-like 1 isoform 3 [Canis familiaris]
          Length = 578

 Score =  159 bits (401), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 119/455 (26%), Positives = 215/455 (47%), Gaps = 37/455 (8%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           Q+ +++++GC  N  D   M     + GYE   +  +ADL +LN+C ++  A +    F 
Sbjct: 63  QKIWMRTWGCSHNNSDGEYMAGQLAAYGYEITENASEADLWLLNSCTVKNPAEDH---FR 119

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             I+  +    K      +V+AGCV QA+  +   +      ++G Q   R+ E++E   
Sbjct: 120 NSIKKAQEENKK------IVLAGCVPQAQPRQDYFKG---LSIIGVQQIDRVVEVVEETI 170

Query: 145 FGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            G  V +        K    + +D    RK  +   +++  GC   CT+C   + RG   
Sbjct: 171 KGHSVRLLGQKKANGKRLGGARLDLPKIRKNPLIEIISVNTGCLNACTYCKTKHARGNLA 230

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI------ 257
           S  + ++V+ A++    GVCEI L  ++  A+ G+ +         LL+ L E+      
Sbjct: 231 SYPIDELVERAKQSFQEGVCEIWLTSEDTGAY-GRDIG---TNLPALLWKLVEVIPEGAM 286

Query: 258 --KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
              G+    Y   H  +M+  L     +   +  +LH+PVQS SD +L  M R +   ++
Sbjct: 287 LRLGMTNPPYILEHLEEMAKIL-----NHPRVYAFLHIPVQSASDTVLMEMKREYCVADF 341

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
           ++++D ++   P I +++D I GFPGETD DF+ T+ LV+   +   F  ++ PR GTP 
Sbjct: 342 KRVVDFLKEKVPGITLATDIICGFPGETDQDFQETVKLVEDYKFPSLFINQFYPRPGTPA 401

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFN--DACVGQIIEVLIEKHGKEKGKLVGRSP 433
           + M+ QV   VK +R   L +       S+N  D  +G+  +VL+ +   +    V  + 
Sbjct: 402 AKMV-QVPAQVKKQRTKDLSRVFH----SYNPYDHKIGERQQVLVTEESFDSKFYVAHNR 456

Query: 434 WLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           + + V++      +G +I+V I +     + G+ V
Sbjct: 457 FYEQVLVPKNPTFMGKMIEVDIYESGKHFMKGQPV 491


>gi|300192927|ref|NP_001177888.1| CDKAL1-like protein [Nasonia vitripennis]
          Length = 541

 Score =  159 bits (401), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 122/463 (26%), Positives = 214/463 (46%), Gaps = 49/463 (10%)

Query: 22  IVP--QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEK 79
           ++P  Q  ++K++GC  N  DS  M       GY        ADL +LN+C ++  A + 
Sbjct: 56  VIPGTQTIYIKTWGCTHNSSDSEYMAGQLSMYGYNLTEDKSIADLWILNSCTVKNPAEDH 115

Query: 80  VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVV-----VGPQTYY 134
             + +   R L            +VV+GCV Q         +P  N +     +G Q   
Sbjct: 116 FKNEINLARKLGKH---------IVVSGCVPQG--------APKSNFIQGLSIIGVQQID 158

Query: 135 RLPELLERARFGKRVVDTDYSVEDKFERLSIVDGG-----YNRKRGVTAFLTIQEGCDKF 189
           R+ E++E    G    +T   +  K E    + G        R+  +   + I  GC   
Sbjct: 159 RVVEVVEETLKG----NTVKFLNKKKEAGKKIGGAPLSLPKVRRNPLIEIIAINTGCLNQ 214

Query: 190 CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSD 249
           CT+C   + RG   S    +++D A +   +G+ E+ L  ++  A+ GK +D       +
Sbjct: 215 CTYCKTKHARGELGSYRPEEIIDRAIQAFKDGIKELWLTSEDTGAY-GKDID---TNLPE 270

Query: 250 LLYSLSE-IKGLVRLRYTTSHPRDMSDCL-----IKAHGDLDVLMPYLHLPVQSGSDRIL 303
           LL+ L + I    R+R   ++P  + + L     I  H  +     +LH+PVQSGSDR+L
Sbjct: 271 LLWKLIDVIPDKCRMRIGMTNPPYILEHLEEIGKILKHPKV---YSFLHIPVQSGSDRVL 327

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
             M R ++  ++  I+D ++   P+I I++D I GFP ET +DF  TM L  K  ++  F
Sbjct: 328 FDMKREYSRSDFENIVDFLKEKIPNINIATDVICGFPTETSEDFEETMSLCQKYKFSTLF 387

Query: 364 SFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK 423
             ++ PR GTP + M++   + +K    L    +  +    +N   +G+I EVL+ +   
Sbjct: 388 INQFFPRQGTPAAKMIQVPSKEIKNRTKLI--SEFFQSYEPYNTK-IGEIQEVLVTEIAH 444

Query: 424 EKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGE 466
           +    V  + + + V++  K   +G+++KV+I      ++ GE
Sbjct: 445 DNKHYVAHNSYYEQVLIPMKKEYMGEMLKVKIISASKHSMKGE 487


>gi|251772238|gb|EES52808.1| RNA modification enzyme, MiaB family [Leptospirillum
           ferrodiazotrophum]
          Length = 456

 Score =  159 bits (401), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 119/439 (27%), Positives = 207/439 (47%), Gaps = 22/439 (5%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           + S GC  N  D+ RM     S+GY+ V  +++A+++++NTC     A  +    L    
Sbjct: 15  IVSLGCPKNSSDTERMISDLSSRGYKVVPDLEEAEILLVNTCSFVTDARRESVDTL---- 70

Query: 89  NLKNSRIKEGGDLLVVV-AGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147
            L+ SR KE G    +V AGC+     +++    P V++ +     +RL E+L++     
Sbjct: 71  -LELSRYKEEGKARYLVGAGCLVSRYRDQMGELIPEVDLALTTFEEHRLGEILDQVGGS- 128

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
               +  S+      L     G        A++ + EGCD  CTFC +P  RG ++SR+ 
Sbjct: 129 --TSSPLSIRPALFPLP----GARLTPPHRAYVKVSEGCDHPCTFCSIPLARGGQVSRAP 182

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
             ++ E R L   G  E+TL+ Q++  + G+ L G     SDLL  +    G+  +R   
Sbjct: 183 ESILAEVRDLASRGTREVTLIAQDLTRY-GQDL-GLSDGLSDLLERIDAEGGIPWVRLLY 240

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
           ++P  ++D L+        ++PYL +P+Q     +L +M R       ++++DR+RS  P
Sbjct: 241 AYPTLVTDRLLSVMAKSRTVLPYLDIPLQHVEASVLTAMKRPGNVEFMKRLVDRVRSAIP 300

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
            + + + FI GFPGET+ +F + MD V    +     F +S   GTP  ++ +QV   ++
Sbjct: 301 GVTLRTTFITGFPGETEREFESLMDFVAWARFDHVGVFAFSREEGTPSYSLPDQVPHRIR 360

Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-----KGKLVGRSP--WLQSVVL 440
             R   L        +  N A  G +  +LIE   ++      G+  G +P      V++
Sbjct: 361 MRRRKDLMALCAGISLEKNKALEGTVQPILIEGLSEQSDLVLSGRTRGMAPDGIDGEVLV 420

Query: 441 NSKNHNIGDIIKVRITDVK 459
            S   + G+I+  RI   +
Sbjct: 421 LSGQGSPGEIVDCRIVKAR 439


>gi|224026389|ref|ZP_03644755.1| hypothetical protein BACCOPRO_03145 [Bacteroides coprophilus DSM
           18228]
 gi|224019625|gb|EEF77623.1| hypothetical protein BACCOPRO_03145 [Bacteroides coprophilus DSM
           18228]
          Length = 438

 Score =  159 bits (401), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 130/448 (29%), Positives = 215/448 (47%), Gaps = 35/448 (7%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N  ++  +  M    G   V   + AD+ V+NTC + E A +K    + R+   
Sbjct: 16  TLGCKLNFSETSSIGKMLKDVGVRTVRKGEKADICVINTCSVTEIADKKCRQAIHRL--- 72

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPI--VNVVVGPQTYYRLPELL---ERARF 145
                K+     VVV GC AQ + E++   S I  V++V+G +    L   L   E+   
Sbjct: 73  ----TKQHPGAFVVVTGCYAQLKPEQV---SNIEGVDLVLGAEQKGELINYLGSLEKHEH 125

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G+ +      +       S  D    R R    FL +Q+GCD FC++C +P+ RG   + 
Sbjct: 126 GEAITTATKDIRSFAPSCSRGD----RTR---YFLKVQDGCDYFCSYCTIPFARGRSRNG 178

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            +  +V +AR+    G  EI L G N+  + GK   GE  TF DL+ +L +++G+ R R 
Sbjct: 179 KIEDLVAQARQAAAEGGKEIVLTGVNIGDF-GK-TTGE--TFFDLVKALDQVEGIERFRI 234

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
           ++  P  ++D +I+        MP+ H+P+QSG D +LK M RR+    +   I +I+ +
Sbjct: 235 SSIEPNLLTDEIIEYVAHSRAFMPHFHIPLQSGCDEVLKLMRRRYDIALFASKIRKIKEL 294

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM---LEQV 382
            PD  I  D IVG  GET + F    + +  +   Q   F YS R GT    +   +   
Sbjct: 295 MPDAFIGVDVIVGTRGETPEYFEKAYEFIRGLDVTQLHVFSYSERPGTQALKIDYVVPAE 354

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
           +++ +++RLL L     E+  +F    +GQ  +VL+EK  K    + G +     V L  
Sbjct: 355 EKHQRSQRLLALSD---EKTKAFYARHIGQEAKVLMEK-SKAGMPMHGFTENYIRVELEH 410

Query: 443 KNHNIGDIIKVRITDVK--ISTLYGELV 468
            +     +++VR+ +     + L GELV
Sbjct: 411 DDSLDNHLVQVRMGEFNEDSTALKGELV 438


>gi|182415379|ref|YP_001820445.1| MiaB-like tRNA modifying enzyme YliG [Opitutus terrae PB90-1]
 gi|238066424|sp|B1ZW93|RIMO_OPITP RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|177842593|gb|ACB76845.1| MiaB-like tRNA modifying enzyme YliG [Opitutus terrae PB90-1]
          Length = 471

 Score =  159 bits (401), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 120/445 (26%), Positives = 207/445 (46%), Gaps = 26/445 (5%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ DS  M       G   +   + AD++++NTC   + + E+    +  +   
Sbjct: 8   SLGCAKNLVDSEIMVGHLHQAGMAVIPEAEKADVVIVNTCSFIDSSKEESIGHILEVHQH 67

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRR-SPIVNVVVGPQTYYRLPELLERARFGKRV 149
           +  R K   +  ++VAGC++Q   +++       V+  +G     ++  +++   + +  
Sbjct: 68  RGLR-KRRKEQKLIVAGCMSQRFSKDLSSSLHDEVDAFIGLDQVTKVAPIIQEI-YARER 125

Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVT----AFLTIQEGCDKFCTFCVVPYTRGIEISR 205
             TD  V     R + +      +  +T    A++ I EGC+  CTFC++P  RG   SR
Sbjct: 126 TKTDDPVSFVEGRSTFIPDYDTPRFRLTPKHFAYVKIAEGCNHPCTFCIIPQIRGRHRSR 185

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQN-----VNAW------RGKGLDGEKCTFSDLLYSL 254
           ++  VV E R+L+  GV EI L+ Q+     ++ W      R     G     + LL  L
Sbjct: 186 TVESVVAEVRQLVREGVKEINLISQDTTFFGMDTWEQRPNPRTPVDSGRGTALTTLLRQL 245

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
           + I+G   +R   +HP   SD LI+   +   +  Y+ +P+Q  SD +L  M R  +   
Sbjct: 246 NAIEGDFWIRLLYTHPAHWSDELIRTIAECPKVARYIDIPLQHISDAMLSRMQRETSGGY 305

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
            R +I RIR+  P IA+ + FIVGFPGETD D       + +  + +   F+YS   GT 
Sbjct: 306 IRDLIARIRAGIPGIAVRTTFIVGFPGETDADVDELCAFISETKFERLGVFRYSQEDGTR 365

Query: 375 GSNMLEQVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR 431
            + M EQ+    K     R + LQK++       +   VG+ + VL+E+ G  +G+    
Sbjct: 366 AAKMPEQLSAKTKEARWHRTMALQKQI---AADVSKTYVGRTLRVLVEEPGVARGE--AD 420

Query: 432 SPWLQSVVLNSKNHNIGDIIKVRIT 456
           +P +   V   +   +G+   V +T
Sbjct: 421 APDIDGRVYVPRELPVGEFADVTVT 445


>gi|53723567|ref|YP_102978.1| ribosomal protein S12 methylthiotransferase [Burkholderia mallei
           ATCC 23344]
 gi|121600276|ref|YP_993126.1| putative tRNA modifying protein [Burkholderia mallei SAVP1]
 gi|124384882|ref|YP_001026098.1| putative tRNA modifying protein [Burkholderia mallei NCTC 10229]
 gi|126448468|ref|YP_001080632.1| putative tRNA modifying protein [Burkholderia mallei NCTC 10247]
 gi|238562635|ref|ZP_00440103.2| conserved hypothetical protein [Burkholderia mallei GB8 horse 4]
 gi|254178505|ref|ZP_04885160.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Burkholderia
           mallei ATCC 10399]
 gi|254199923|ref|ZP_04906289.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Burkholderia
           mallei FMH]
 gi|254206256|ref|ZP_04912608.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Burkholderia
           mallei JHU]
 gi|254358329|ref|ZP_04974602.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Burkholderia
           mallei 2002721280]
 gi|81604977|sp|Q62JZ1|RIMO_BURMA RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|238065305|sp|A3MK46|RIMO_BURM7 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|238065306|sp|A2S2C9|RIMO_BURM9 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|238065307|sp|A1V4H3|RIMO_BURMS RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|52426990|gb|AAU47583.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Burkholderia
           mallei ATCC 23344]
 gi|121229086|gb|ABM51604.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Burkholderia
           mallei SAVP1]
 gi|124292902|gb|ABN02171.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Burkholderia
           mallei NCTC 10229]
 gi|126241338|gb|ABO04431.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Burkholderia
           mallei NCTC 10247]
 gi|147749519|gb|EDK56593.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Burkholderia
           mallei FMH]
 gi|147753699|gb|EDK60764.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Burkholderia
           mallei JHU]
 gi|148027456|gb|EDK85477.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Burkholderia
           mallei 2002721280]
 gi|160699544|gb|EDP89514.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Burkholderia
           mallei ATCC 10399]
 gi|238522236|gb|EEP85682.1| conserved hypothetical protein [Burkholderia mallei GB8 horse 4]
          Length = 463

 Score =  159 bits (401), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 126/465 (27%), Positives = 210/465 (45%), Gaps = 50/465 (10%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC   + DS ++     ++GYE   + D ADL+V+NTC   ++A ++    +G     
Sbjct: 21  SLGCPKALVDSEQIITQLRAEGYEISGTYDGADLVVVNTCGFIDEAVQESLDAIGEA--- 77

Query: 91  KNSRIKEGGDLLVVVAGCVA---QAEGEEILRR-SPIVNVVVGPQTYYRLPELLERARFG 146
               + E G   V+V GC+     A G  ++    P V  V GP     + + +  +   
Sbjct: 78  ----LAENGK--VIVTGCLGAKKSASGSGLIAEVHPKVLAVTGPHAVGEVMQAV-HSHLP 130

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           K          D F  L +   G        A+L I EGC+  C+FC++P  RG  +SR 
Sbjct: 131 KP--------HDPFVDL-VPAAGIKLTPRHYAYLKISEGCNHRCSFCIIPSMRGELVSRP 181

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYSLS 255
           +++V+ EA  L  +GV E+ ++ Q+ +A           W G+ L   K   ++L+ +L 
Sbjct: 182 VAEVMLEAENLFKSGVKELLVISQDTSAYGVDVKYRTGFWNGRPL---KTRMTELVGALG 238

Query: 256 EIKG----LVRLRYTTSHPRDMSDCLIKAHGDLD-VLMPYLHLPVQSGSDRILKSMNRRH 310
           E+       VRL Y   +P       + A G L   ++PYL +P Q     +LK M R  
Sbjct: 239 ELAAQYGAWVRLHYVYPYPHVDEIIPMMAQGPLKGHVLPYLDVPFQHAHPEVLKRMKRLA 298

Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370
            A    + + + R + PD+ I S FI GFPGETD  F   +D + +    +   F YSP 
Sbjct: 299 NAERVLERVQKWREICPDLTIRSTFIAGFPGETDAQFETLLDFIREAELDRVGCFAYSPV 358

Query: 371 LGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKL 428
            G   + +   + ++V+  R     +   E   +     +G+ ++VLI++   E   G+ 
Sbjct: 359 EGASANALDGALPDDVREARRARFMEVAEEVSAARIARKIGKTLKVLIDEVNAEGGIGRT 418

Query: 429 VGRSPWLQSVVL------NSKNHNIGDIIKVRITDVKISTLYGEL 467
              +P +  VV        SK + +G+ + V+IT      L+GE+
Sbjct: 419 AADAPEIDGVVYVEPAAKASKRYKVGEFVSVKITGADGHDLWGEV 463


>gi|285808603|gb|ADC36122.1| putative 2-methylthioadenine synthetase [uncultured bacterium 253]
          Length = 432

 Score =  159 bits (401), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 122/442 (27%), Positives = 198/442 (44%), Gaps = 42/442 (9%)

Query: 50  SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCV 109
           + GYE      +AD +V+NTC     A ++    +     LK +    G    +VVAGC+
Sbjct: 7   ANGYELTADASEADTVVVNTCGFIASAKQESIEAILEAAQLKTN----GKAQRLVVAGCL 62

Query: 110 AQAEGEEILRRSPIVNVVVG------------PQTYYR-LPELLERARFGKRVVDTDYSV 156
            +   +E+    P V+  +G            PQT  R LP +      G +     Y  
Sbjct: 63  VERYRDELKASLPEVDAFIGTSQINDILAVCNPQTNTRSLPIIA----LGNQ--SATYLY 116

Query: 157 EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARK 216
           ++   R+      Y       AF+ I EGCD+ C FC +P  RG   SR    +V EA +
Sbjct: 117 DESTPRVLATPAHY-------AFIKIAEGCDRPCAFCFIPQMRGHFRSRRFGSIVAEAHQ 169

Query: 217 LIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDC 276
           L   GV E+ L+ Q+ + + G+ L G++   + LL  LS   G+  +R    +P  +SD 
Sbjct: 170 LAXEGVKELILVAQDSSRY-GEDL-GKQDALAHLLRELSHTDGIEWVRVMYXYPTHISDA 227

Query: 277 LIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFI 336
            +    +    + YL +P+Q  S  +LK M R        ++I R+R   P IA+ + FI
Sbjct: 228 FLDVLAEEAKAVKYLDMPLQHASQNVLKLMKRGGNRASLEKLIRRVRERVPGIAVRTTFI 287

Query: 337 VGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQK 396
            GFPGETD+DF   +  +  + + +   F YS   GTP   +  +V+  +  +R   L K
Sbjct: 288 TGFPGETDEDFEELLTFIKNVEFDRVGVFTYSDEEGTPAFELANKVEPRIAKQRRARLMK 347

Query: 397 KLREQQVSFNDACVGQIIEVLIEKHGKE-----KGKLVGRSPWLQSVVL-----NSKNHN 446
                    N A VG+++ V+ E    E     +G++  ++P +   VL          +
Sbjct: 348 AQSRISRKRNKAKVGEVLRVIFEGDSNESDLLWQGRIETQAPDIDGCVLINDAPEGFTPS 407

Query: 447 IGDIIKVRITDVKISTLYGELV 468
            G ++ V IT+ +   L G +V
Sbjct: 408 PGAMVNVLITEAQEYDLVGRIV 429


>gi|226357149|ref|YP_002786889.1| ribosomal protein S12 methylthiotransferase [Deinococcus deserti
           VCD115]
 gi|226319139|gb|ACO47135.1| putative 2-methylthioadenine synthetase [Deinococcus deserti
           VCD115]
          Length = 503

 Score =  159 bits (401), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 133/479 (27%), Positives = 220/479 (45%), Gaps = 57/479 (11%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC   + DS R+      +GYE   S +DA  +++NTC     A E+  + +G   + 
Sbjct: 23  SLGCPKALVDSERILTQLRFEGYEVAPSYEDAHAVIVNTCGFITPAVEESLTAIGEALDA 82

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT----YYRLPELLE---RA 143
            +          V+V GC+ +   E+IL R P V  + G +        + ELL     A
Sbjct: 83  TSK---------VIVTGCLGE-RPEKILERHPKVAAITGSEAVDDVMMHVRELLPIETDA 132

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT------------AFLTIQEGCDKFCT 191
             G   V       D  + +S+ D   N + G              A++ I EGC+  C 
Sbjct: 133 FTGLLPVAAPGMRADAEQPVSLTDP--NARHGDVLAPSVKLTPRHYAYVKIAEGCNHTCA 190

Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA------WRGKGLDGE-- 243
           FC++P  RG ++SR    V+ E+ +LI  G  E+ ++ Q+ +A      +R     GE  
Sbjct: 191 FCIIPKLRGRQVSRDAGSVLYESFRLIAGGTKELMIISQDTSAYGVDIRYRESEFQGEQI 250

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
           +   +DL   L E+   VR+ Y   +P    + L++  G   +L PYL +P+Q  S RIL
Sbjct: 251 RAHLTDLAVKLGEMGAWVRMHYVYPYPH--VEKLVELMGQGKIL-PYLDVPLQHASPRIL 307

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           K M RR  A      I R R + P++ I S FIVGFPGET+++F+  +  +++    +  
Sbjct: 308 KLM-RRPGAGRQLDTIRRWRELCPELVIRSTFIVGFPGETEEEFQELLTFLEEARLDRVG 366

Query: 364 SFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK 423
           +F YS         +   V E +K ERL    +  +          +G++++V+I++   
Sbjct: 367 AFAYSDVEEADARALPGHVPEEIKQERLARFMEVAQRISTEKLAEKIGRVMDVIIDEFND 426

Query: 424 EKG-----KLVGRS----PWLQSVVL-----NSKNHNIGDIIKVRITDVKISTLYGELV 468
           ++G     +L+GR+    P +   V       +    IGDI++ RI D     L+GE++
Sbjct: 427 DEGDLPGTRLIGRTKGDAPGIDGQVYLYAGDFAGQVKIGDIVRARIEDSDEYDLFGEVL 485


>gi|34496828|ref|NP_901043.1| oxidoreductase [Chromobacterium violaceum ATCC 12472]
 gi|81656320|sp|Q7NYA1|RIMO_CHRVO RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|34102683|gb|AAQ59048.1| probable oxidoreductase [Chromobacterium violaceum ATCC 12472]
          Length = 438

 Score =  159 bits (401), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 140/465 (30%), Positives = 211/465 (45%), Gaps = 53/465 (11%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
            P+  FV S GC     DS ++     ++GYE   S D ADL+V+NTC   + A E+   
Sbjct: 4   TPRVGFV-SLGCPKAASDSEQILTRLRAEGYEIAPSYDGADLVVVNTCGFIDSAVEESLD 62

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +G   N       E G   V+V GC+  A+G+ +    P V  V GP     +      
Sbjct: 63  AIGEALN-------ENGK--VIVTGCLG-AKGDVVRDVHPSVLAVTGPHATEEV------ 106

Query: 143 ARFGKRVVDTDYS-VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
                  V T      D F  L + D G        A+L I EGC+  CTFC++P  RG 
Sbjct: 107 ----MSAVHTHLPKPHDPFVDL-VPDIGVRLTPKHYAYLKISEGCNHRCTFCIIPSMRGD 161

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE-----------KCTFSDL 250
             SR +  V+ EA  L   GV EI ++ Q+ +A+   G+D +           K   ++L
Sbjct: 162 LESRPIHDVLREAESLAKAGVKEILVISQDTSAY---GVDTKYKLGFHNGRPVKTRMTEL 218

Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
              L      VRL Y   +P    D +I    D  +L PYL +P Q  S ++LK M R  
Sbjct: 219 CEELGRHGIWVRLHYVYPYPH--VDEVIPLMRDGKIL-PYLDIPFQHASQKVLKLMKRPA 275

Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370
            +      I + R + P++ I S FIVGFPGET++DF   +  + +    +   F YSP 
Sbjct: 276 NSDNVLARIKKWREICPELVIRSTFIVGFPGETEEDFEELLAFIREAELDRVGCFTYSPV 335

Query: 371 LGTPGSNMLEQVDENVK---AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK 427
            G   + +   V E+VK    ER + +Q ++  +++      VGQ ++VL+++   E G 
Sbjct: 336 EGATANELPNPVPEDVKEARKERFMAVQAEISARRLERR---VGQTLQVLVDEIDDE-GT 391

Query: 428 LVGRS----PWLQSVVL--NSKNHNIGDIIKVRITDVKISTLYGE 466
            V RS    P +  +V   ++     G+  +V I D     L+GE
Sbjct: 392 AVCRSYADAPEIDGLVFVEDAAGMQPGEFYQVEIVDCSEHDLWGE 436


>gi|91094359|ref|XP_970283.1| PREDICTED: similar to GA19679-PA [Tribolium castaneum]
          Length = 548

 Score =  159 bits (401), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 118/451 (26%), Positives = 220/451 (48%), Gaps = 33/451 (7%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           Q+ ++K++GC  N  D+  M     + GY+   +  +ADL +LN+C ++  A +      
Sbjct: 71  QKIYIKTWGCAHNSSDTEYMAGQLTAYGYKLTENKKEADLWLLNSCTVKNPAED------ 124

Query: 85  GRIRNLKNSRIKEGGDL--LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
              RN    +I+E  +L   +VVAGCV Q   +    +      ++G Q   R+ E++E 
Sbjct: 125 -HFRN----QIQEAKELGKYIVVAGCVPQGAPKASFIQG---LSIIGVQQIDRVVEVVEE 176

Query: 143 ARFGK--RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
              G   +++ T      K    S++     R+  +   + I  GC   CT+C   + RG
Sbjct: 177 TLKGNTVKLLGTKKEQGKKIGGASLLLPKV-RRNPLIEIIAINTGCLNQCTYCKTKHARG 235

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE-IKG 259
              S    ++V+ A++  + GV EI L  ++   + G+ +     +  +LL+ L E I  
Sbjct: 236 ELGSYPPEEIVERAKQAFEEGVVEIWLTSEDTGTY-GRDIG---TSLPELLWKLVEVIPE 291

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDV--LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
             RLR   ++P  + + L +    ++   +  +LH+PVQSGSD++L  M R +   ++  
Sbjct: 292 GCRLRLGMTNPPYILEHLSEVAKIMNHPRVYSFLHVPVQSGSDQVLSDMKREYFRKDFEH 351

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
           ++D ++S  P + I++D I GFP ET+ DF  T+ L +K  +   F  ++ PR GTP + 
Sbjct: 352 VVDFLQSQIPGMTIATDIICGFPTETEKDFEDTLSLCEKYKFPSLFINQFFPRPGTPAAL 411

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFN--DACVGQIIEVLIEKHGKEKGKLVGRSPWL 435
           +       + A+ +    K+L +   S+   D  VG++ EVL+ +   +K   VG + + 
Sbjct: 412 L-----PRIPAQEVKGRTKRLTDLFYSYQPYDKKVGEVQEVLVTEVSHDKKHYVGHNKFY 466

Query: 436 QSVVLNSKNHNIGDIIKVRITDVKISTLYGE 466
           + V++      +G ++ V+I      ++ GE
Sbjct: 467 EQVLVPKDEKYMGKLVTVKIVSATKFSMTGE 497


>gi|167753010|ref|ZP_02425137.1| hypothetical protein ALIPUT_01274 [Alistipes putredinis DSM 17216]
 gi|167659324|gb|EDS03454.1| hypothetical protein ALIPUT_01274 [Alistipes putredinis DSM 17216]
          Length = 432

 Score =  159 bits (401), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 124/457 (27%), Positives = 217/457 (47%), Gaps = 43/457 (9%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEKVYS 82
           ++  V + GC  N  DS  +     + GY   +  D  DA ++V+NTC     A ++   
Sbjct: 2   KKINVITLGCSKNTVDSEHLMAQLAAAGYTVTHDSDRTDAKVVVINTCGFIGDAKQESID 61

Query: 83  FLGRIRNLKNSRIKEGGDL-LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
            +     L+ +  K+ G +  + V GC+++   EE+    P V+   G + +  +   LE
Sbjct: 62  MI-----LRAAAAKQTGKIERLFVVGCLSERYAEELRAELPEVDEFFGVKDWDDIVRALE 116

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
                    +   +    +                 A+L I EGC+  C +C +P  RG 
Sbjct: 117 ATPRPALATERRLTTPKHY-----------------AYLKISEGCNWKCGYCAIPLIRGP 159

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
             S  +  +++EARKL   GV E+ ++ Q+   + G  L G++   ++LL +L  I G+ 
Sbjct: 160 HASVPMETLLEEARKLAAGGVRELIVIAQDTTYY-GLDLYGKR-RLAELLEALCRIDGIR 217

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
            +R   ++P    D +I+       +  YL +P Q  SD  L +M+RRHT  +  ++ID+
Sbjct: 218 WIRLHYAYPTAFPDEVIEVMAREPKICKYLDIPFQHISDDQLAAMHRRHTKAQAYELIDK 277

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT-PGSNMLE 380
           +R   PD+A+ +  +VG+PGET+ DF   ++ V  + + +   F YS   GT    N+ +
Sbjct: 278 LRQAIPDLALRTTLLVGYPGETEADFEELLEFVRTVRFERLGVFPYSEEEGTYSARNLPD 337

Query: 381 QVDENVK---AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPW--- 434
            V E VK    ER++ LQ ++    +  N A +GQ+  V+I+   ++    VGRS +   
Sbjct: 338 DVPEEVKQSRVERVMALQNEI---SLENNRARIGQLERVIID--SRQGDFYVGRSQYDSP 392

Query: 435 --LQSVVLNSKNHNI--GDIIKVRITDVKISTLYGEL 467
              Q +++ +    +  G   +VRIT  +   LYGEL
Sbjct: 393 EVDQEILIPAAGRRLIRGCFYQVRITAAEDYDLYGEL 429


>gi|315452778|ref|YP_004073048.1| MiaB-like tRNA modifying protein [Helicobacter felis ATCC 49179]
 gi|315131830|emb|CBY82458.1| MiaB-like tRNA modifying enzyme,2-methylthioadenine synthetase
           [Helicobacter felis ATCC 49179]
          Length = 418

 Score =  159 bits (401), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 121/442 (27%), Positives = 217/442 (49%), Gaps = 38/442 (8%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + Q+ + K++GC+ N+YD+  M  +   + +ERV S+++A ++VLN+C +   A     +
Sbjct: 1   MKQKVYFKTFGCRTNLYDTQVM--LAHLKDFERVESLEEAQIVVLNSCTVTNDADYTARA 58

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
           +  ++  L            V   GC A ++G ++  +     V  G     ++  LL+ 
Sbjct: 59  YAKKVHALGKK---------VYFTGCGANSQGLKLFEQGHAFGVF-GHDRKEQINALLQT 108

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
                      Y+    +   SIV     + R   AF+ IQEGCD  C++CV+P  RG  
Sbjct: 109 PE------KFFYADSLTYVERSIVPDFVGKTR---AFVKIQEGCDFKCSYCVIPLVRG-- 157

Query: 203 ISRSL--SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            SRSL   Q++D+ R L   G+ EI L G NV ++ GK     +   + L+  ++ I+G+
Sbjct: 158 KSRSLIEDQILDQVRVLAQKGIVEIVLTGTNVGSY-GKET---RSNIARLIQKIARIEGI 213

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R  +  P  +    ++   D  +L  +LH+ +Q   D +LK M RR+  +  R +++
Sbjct: 214 KRVRIGSLEPSQIDAEFLEL-LDHPILEKHLHIALQHSHDTMLKHMRRRNRTHSDRALLE 272

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           +I S     A+ +DFIVG P E+++ +++ ++   ++       F YSPR GT  S M  
Sbjct: 273 KIAS--KGFALGTDFIVGHPYESEEIWQSALENFKQLPLTHIHPFIYSPRSGTLSSTMQN 330

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQ--IIEVLIEKHGKEKGKLV-GRSPWLQS 437
           +V+  +  ERL  ++ +++    +F      +  ++EVLIE +   KG L  G   +   
Sbjct: 331 RVNGKIAKERLQIIKTQVQTNNHAFRQQVKAEQHVLEVLIESY---KGGLYHGSDQYFNP 387

Query: 438 VVLNSKNHNIGDIIKVRITDVK 459
           + + +K    G  I V   DV+
Sbjct: 388 IEIRAKEDLRGQWIHVSDYDVR 409


>gi|270014918|gb|EFA11366.1| hypothetical protein TcasGA2_TC011523 [Tribolium castaneum]
          Length = 545

 Score =  159 bits (401), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 118/451 (26%), Positives = 220/451 (48%), Gaps = 33/451 (7%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           Q+ ++K++GC  N  D+  M     + GY+   +  +ADL +LN+C ++  A +      
Sbjct: 68  QKIYIKTWGCAHNSSDTEYMAGQLTAYGYKLTENKKEADLWLLNSCTVKNPAED------ 121

Query: 85  GRIRNLKNSRIKEGGDL--LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
              RN    +I+E  +L   +VVAGCV Q   +    +      ++G Q   R+ E++E 
Sbjct: 122 -HFRN----QIQEAKELGKYIVVAGCVPQGAPKASFIQG---LSIIGVQQIDRVVEVVEE 173

Query: 143 ARFGK--RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
              G   +++ T      K    S++     R+  +   + I  GC   CT+C   + RG
Sbjct: 174 TLKGNTVKLLGTKKEQGKKIGGASLLLPKV-RRNPLIEIIAINTGCLNQCTYCKTKHARG 232

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE-IKG 259
              S    ++V+ A++  + GV EI L  ++   + G+ +     +  +LL+ L E I  
Sbjct: 233 ELGSYPPEEIVERAKQAFEEGVVEIWLTSEDTGTY-GRDIG---TSLPELLWKLVEVIPE 288

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDV--LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
             RLR   ++P  + + L +    ++   +  +LH+PVQSGSD++L  M R +   ++  
Sbjct: 289 GCRLRLGMTNPPYILEHLSEVAKIMNHPRVYSFLHVPVQSGSDQVLSDMKREYFRKDFEH 348

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
           ++D ++S  P + I++D I GFP ET+ DF  T+ L +K  +   F  ++ PR GTP + 
Sbjct: 349 VVDFLQSQIPGMTIATDIICGFPTETEKDFEDTLSLCEKYKFPSLFINQFFPRPGTPAAL 408

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFN--DACVGQIIEVLIEKHGKEKGKLVGRSPWL 435
           +       + A+ +    K+L +   S+   D  VG++ EVL+ +   +K   VG + + 
Sbjct: 409 L-----PRIPAQEVKGRTKRLTDLFYSYQPYDKKVGEVQEVLVTEVSHDKKHYVGHNKFY 463

Query: 436 QSVVLNSKNHNIGDIIKVRITDVKISTLYGE 466
           + V++      +G ++ V+I      ++ GE
Sbjct: 464 EQVLVPKDEKYMGKLVTVKIVSATKFSMTGE 494


>gi|150400142|ref|YP_001323909.1| MiaB-like tRNA modifying protein [Methanococcus vannielii SB]
 gi|150012845|gb|ABR55297.1| MiaB-like tRNA modifying enzyme [Methanococcus vannielii SB]
          Length = 421

 Score =  159 bits (401), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 120/452 (26%), Positives = 226/452 (50%), Gaps = 38/452 (8%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKV 80
           ++  + +++ YGC +N  D+  +++     Q +E    ++D+D+IV+NTC +R++   ++
Sbjct: 2   VIDLKIYIEGYGCTLNTADTEIIKNSIKEFQNFEITTDLNDSDIIVVNTCIVRQETEHRM 61

Query: 81  YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140
            S +   ++L            VVVAGC+A+A  ++I   S   + +V P+       +L
Sbjct: 62  ISRIEYFKSLNKK---------VVVAGCMAKALPKKIEYFS---DCMVLPREAQNSGNIL 109

Query: 141 ERARF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
            +     K   + + ++ +K  +LS         +G+ + + I EGC   C++C+V   R
Sbjct: 110 FKKFIENKEKTNFENNLSEKLNKLS--------SKGLISPMPISEGCLGNCSYCIVKKAR 161

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G   S     +V +A + I++G   + +  Q+   +   G D      S+L+  +SEI  
Sbjct: 162 GTLESYDRKLIVKKAMEFINSGTKCLLITAQDTACY---GYDNND-NLSNLIDDISEIPE 217

Query: 260 LVRLRYTTSHPR---DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
              +R    H +    + D L+++     V+  +LHLP+QSG +++LK M R +T  E+ 
Sbjct: 218 KFAMRIGMMHAKFAEPILDELVESFKSEKVV-KFLHLPIQSGDNQVLKDMGRNYTVDEFI 276

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
            +++  +    D+  ++D IVGFP ET+D F  T++++ KI        KYS R  T  +
Sbjct: 277 SVLNEFKRKIKDLNFTTDVIVGFPSETEDAFNNTLEVLKKIKPDFTHGAKYSQRKYTKAA 336

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQ 436
            +L+QVD  ++ ER   L +  R+     N   +GQ  E+L+ K+       +G +   +
Sbjct: 337 -LLKQVDTKIRKERSEILNELRRDLSYGNNKRHIGQTFEILVTKNN------MGVTENSK 389

Query: 437 SVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           +V+    N  IG+  KV+I+D     L G+L+
Sbjct: 390 NVIFKD-NAKIGEFRKVKISDANTFGLLGKLL 420


>gi|152991220|ref|YP_001356942.1| tRNA modifying enzyme [Nitratiruptor sp. SB155-2]
 gi|238066418|sp|A6Q526|RIMO_NITSB RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|151423081|dbj|BAF70585.1| tRNA modifying enzyme [Nitratiruptor sp. SB155-2]
          Length = 435

 Score =  159 bits (401), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 120/443 (27%), Positives = 226/443 (51%), Gaps = 32/443 (7%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++  V S GC  N+ D+  M  +     YE     ++ADLI++NTC     A E+    L
Sbjct: 3   KKLHVVSLGCTKNLVDTEVM--LARLPEYEITQIPEEADLIIVNTCGFIGPAKEES---L 57

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             + +L + R K   D  +V+AGC+++   EE+ +  P V++  G   Y ++ EL+ + +
Sbjct: 58  QTVFDLHSRRKK---DSTLVMAGCLSERYKEELQKEMPEVDIFTGVGDYAKIDELISQKK 114

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
                 D  Y +  + ER+ I    Y+      A++ + EGC++ C+FC +P  +G   S
Sbjct: 115 --SSFSDQVYLIRSE-ERI-ITGSNYH------AYIKLSEGCNQQCSFCAIPSFKGKLQS 164

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAW-RGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           R +  +V E + L+  G  + T + Q+ +++ R  G+   + +  DL++++ EI+G++  
Sbjct: 165 RPIEDIVQEIKNLVAKGYKDFTFVSQDSSSYLRDFGI---QESLVDLIHAVEEIEGIMSA 221

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R    +P   +  +I A  +  V + Y  +P+Q  SD +LK M R   A + ++++  +R
Sbjct: 222 RILYLYPSTTTPKMIDAIANSPVFVNYFEMPIQHISDSLLKKMKRGIGAQKTKELLYAMR 281

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           +V P+  + +  IVG PGE+++DF   ++ ++   + +   F YS   GT    M E++ 
Sbjct: 282 AV-PESFLRTSLIVGHPGESEEDFHELVEFLEDFEFDRINLFAYSDEEGTKAYEMEEKIP 340

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GRSP-WLQSV--- 438
           + V  ERL  L   +++QQ+   +  +G+ +E  ++   +E   L+ GR   W   V   
Sbjct: 341 QEVIEERLAILDAIVKKQQMKSLEKDLGKTVECYLDGTSEESELLLSGRKKIWAPEVDGE 400

Query: 439 -VLNSK---NHNIGDIIKVRITD 457
            ++N     N  IG++ KV I +
Sbjct: 401 ILINDSEIDNLQIGNLYKVHINE 423


>gi|153808740|ref|ZP_01961408.1| hypothetical protein BACCAC_03039 [Bacteroides caccae ATCC 43185]
 gi|149128566|gb|EDM19784.1| hypothetical protein BACCAC_03039 [Bacteroides caccae ATCC 43185]
          Length = 439

 Score =  158 bits (400), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 120/430 (27%), Positives = 207/430 (48%), Gaps = 23/430 (5%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N  ++  +  +    G       + AD+ V+NTC + E A +K    + R+   
Sbjct: 16  TLGCKLNFSETSTIGKILREAGVRTARKGEKADICVVNTCSVTEMADKKCRQAIHRL--- 72

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               +K+     VVV GC AQ +  ++ +    V+VV+G +    L   L      K   
Sbjct: 73  ----VKQHPGAFVVVTGCYAQLKPGDVAQIKG-VDVVLGAEQKSDLLRYL--GNLQKHEE 125

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
              ++   K   +       +R      FL +Q+GCD FC++C +P+ RG   + +++ +
Sbjct: 126 GEAFTTATK--DIRSFSPSCSRGDRTRFFLKVQDGCDYFCSYCTIPFARGRSRNGTIASM 183

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270
           V++A +    G  EI L G N+  + GK   GE  TF DL+ +L +++G+ R R ++  P
Sbjct: 184 VEQAGQAAAEGGKEIVLTGVNIGDF-GK-TTGE--TFFDLVKALDQVEGIERYRISSIEP 239

Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330
             ++D +I+        MP+ H+P+QSGSD +LK M RR+    +   + +I+ V PD  
Sbjct: 240 NLLTDEIIEFVSRSRSFMPHFHIPLQSGSDEVLKLMRRRYDTALFASKVKKIKEVMPDAF 299

Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM---LEQVDENVK 387
           I  D IVG  GET++ F      +  +   Q   F YS R GT    +   +   +++ +
Sbjct: 300 IGVDVIVGTRGETEEYFEEAYQFIAGLDVTQLHVFSYSERPGTQALKIDYVVSPEEKHQR 359

Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNI 447
           ++RLL L     E+  +F    +GQ + VL+EK  K    + G +     V + + N   
Sbjct: 360 SQRLLALSD---EKTQAFYARHIGQTMSVLMEK-SKAGTPMHGFTENYIRVEVEADNSLD 415

Query: 448 GDIIKVRITD 457
             +I VR+ D
Sbjct: 416 NQVINVRLGD 425


>gi|192288683|ref|YP_001989288.1| MiaB-like tRNA modifying enzyme [Rhodopseudomonas palustris TIE-1]
 gi|192282432|gb|ACE98812.1| MiaB-like tRNA modifying enzyme [Rhodopseudomonas palustris TIE-1]
          Length = 423

 Score =  158 bits (400), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 137/449 (30%), Positives = 206/449 (45%), Gaps = 62/449 (13%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V ++GC++N ++S  +     S G         AD IV+N+C +  +A  +      +IR
Sbjct: 5   VVTFGCRLNAFESELIRREAESAGL--------ADAIVVNSCAVTNEAVAQARQ---QIR 53

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVV-----VGPQTYYRLPELLER- 142
            LK +R     +  ++V GC AQ E       + +  V+          ++     LE  
Sbjct: 54  KLKRAR----PEARIIVTGCAAQTEPATFAAMAEVDRVIGNDDKTRSDAWHAAKGALEAG 109

Query: 143 ARFG-----KRVVDTDYSVEDKFERLSIVDG---GYNRKRGVTAFLTIQEGCDKFCTFCV 194
           A FG     K  V    +V +    L  +DG   G  R      F+ +Q GCD  CTFC+
Sbjct: 110 ASFGLDTEQKIAVADIMAVREMAPHL--LDGYQSGLPR-----VFVQVQNGCDHRCTFCI 162

Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL 254
           +PY RG   S  +  VV++ R L + G  EI L G ++ ++ G  L G     + +   L
Sbjct: 163 IPYGRGNSRSVPVGAVVEQVRLLAERGHAEIVLTGVDLTSY-GADLPGAPKLGTLVKKVL 221

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
             +  L RLR ++    +    LI A      LMP+LHL +Q+G D ILK M RRH   +
Sbjct: 222 RHVPELQRLRISSIDQVEADRDLIDALATEPRLMPHLHLSLQAGDDLILKRMKRRHARAD 281

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
                  +R  RPDIA+ +D I GFP ET++ F+ ++DLV++ G      F YSPR GTP
Sbjct: 282 AIAFCAEVRRRRPDIALGADLIAGFPTETEEMFQRSLDLVEECGLTFLHVFPYSPRPGTP 341

Query: 375 GSNMLEQVDENV--------KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG 426
            + M  Q+D  V        +A     LQ++L        DA +G    VLIE   +   
Sbjct: 342 AARM-PQLDGRVIRDRAARLRAAGEAALQRRL--------DAEIGATRAVLIESPTQ--- 389

Query: 427 KLVGRSPWLQSVVLNSKNHNIGDIIKVRI 455
              GR+     V ++      GD+  +RI
Sbjct: 390 ---GRTEHFLPVAISGATP--GDVQTLRI 413


>gi|323345505|ref|ZP_08085728.1| MiaB tRNA modifying enzyme-like protein [Prevotella oralis ATCC
           33269]
 gi|323093619|gb|EFZ36197.1| MiaB tRNA modifying enzyme-like protein [Prevotella oralis ATCC
           33269]
          Length = 432

 Score =  158 bits (400), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 128/454 (28%), Positives = 217/454 (47%), Gaps = 47/454 (10%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDD--ADLIVLNTCHIREKAAEK-VYSFLGRI 87
           + GC  N+ DS  +   F   GY  V+   +   ++ V+NTC   E A E+ + + L  +
Sbjct: 10  TMGCSKNLVDSELLMKQFEVNGYHCVHDSKNPQGEIAVVNTCGFIESAKEESINTILELV 69

Query: 88  RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147
                 R+K+     + V GC++Q   EE+ +  P V+   G   Y +L   L +A    
Sbjct: 70  AAKSEGRLKK-----LYVMGCLSQRYKEELEKEIPEVDKFYGKFNYKQLLSDLGKAEI-- 122

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVT-----AFLTIQEGCDKFCTFCVVPYTRGIE 202
                            I  GG   KR +T     A+L I EGCD+ C +C +P   G  
Sbjct: 123 -----------------IACGG---KRHLTTPRHYAYLKIAEGCDRHCAYCAIPLITGKH 162

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR  ++++ E  +L+ NGV E  ++ Q +  + G  +DG++   +DL+ ++++IKG+  
Sbjct: 163 VSRPKAEILQEVEELVANGVKEFQIIAQELT-YYGVDIDGKR-HIADLISAIADIKGVKW 220

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R   ++P      L+    +   +  YL + +Q  SD IL  M+R  +  E   +I  I
Sbjct: 221 IRLHYAYPNQFPMELLDVMKEKSNVCKYLDIALQHISDHILTRMHRHVSKQETIDLIKAI 280

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQ 381
           R+  PDI I +  +VGFPGET++DF    + V    + +  +F YS   GT  + N  + 
Sbjct: 281 RTKVPDIYIRTTLLVGFPGETEEDFEELKEFVKWARFERMGAFAYSEEEGTYSALNYKDD 340

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQS 437
           V E+VK +RL  L +  ++      D  +G  ++V+I++  KE    V R    SP +  
Sbjct: 341 VPEDVKQQRLDELMQIQQDISTEIEDEKIGCKMKVIIDR--KEGNYYVARTEFSSPEVDP 398

Query: 438 VVL---NSKNHNIGDIIKVRITDVKISTLYGELV 468
            VL     K  ++G    V+IT  +   +Y E++
Sbjct: 399 EVLIPAKGKMLHVGSFYNVQITGAEEFDMYAEVI 432


>gi|307595884|ref|YP_003902201.1| MiaB family RNA modification enzyme [Vulcanisaeta distributa DSM
           14429]
 gi|307551085|gb|ADN51150.1| RNA modification enzyme, MiaB family [Vulcanisaeta distributa DSM
           14429]
          Length = 452

 Score =  158 bits (400), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 131/455 (28%), Positives = 219/455 (48%), Gaps = 41/455 (9%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +F V ++GC +N  DS  M     S G+E    ++ AD I++NTC +RE+A       L 
Sbjct: 4   KFTVITFGCWLNKADSDIMITKLRSLGWEYTEDVESADTIIVNTCAVREEAERNELKLLK 63

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R+        +E     ++VAGC+ +     I   SP   ++          EL++    
Sbjct: 64  RLS-------EEYPGKRLIVAGCLTRIRPATIKDVSPNAMLISSHGA-----ELIDE--- 108

Query: 146 GKRVVDTDYSVEDKFERLS-IVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR---GI 201
              VV ++  V    +R +  +   Y    G    + IQ GC   C+FCV    R   G 
Sbjct: 109 ---VVSSNTDVHVYEDRPAKYLPNYYPELHGHRYVVPIQVGCLGNCSFCVTKIGRMGFGR 165

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-RGKGLDGEKCTFSDLLYS-LSEIKG 259
             S  +  +V+     +  G  EI L GQ ++A+ R +G D      +DLL   L+++ G
Sbjct: 166 VKSYGIDDIVNAITNAVSKGAREIYLTGQEISAYGRDRGYD-----LADLLEKILAKVDG 220

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMP------YLHLPVQSGSDRILKSMNRRHTAY 313
              +R     P ++S  + +    LDV+        + H+PVQSGSDR+L  M R+++  
Sbjct: 221 RFMVRLGMMEPLELSRIIDRL---LDVVKSDWRVYRFFHVPVQSGSDRVLMLMRRKYSVD 277

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
            +R I+ RIR+  PD  +++D IVGFPGETD+DF A++ L++++G  +    +YS R  T
Sbjct: 278 LFRDIVKRIRNAFPDATVATDIIVGFPGETDEDFWASVRLIEELGIDKVNLARYSRRPFT 337

Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSP 433
             + M EQV E VK ER            +  N   +G+ +  ++ +   +    V RS 
Sbjct: 338 EAAYM-EQVPEQVKKERSKIATDVFNRVALERNKTFIGREMWGIVSEVDFKGENYVVRSY 396

Query: 434 WLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
             + + +  +  +IG  ++V++TD     L+G+L+
Sbjct: 397 NYKPIAV--RKADIGAFVRVKVTDATSQRLFGQLL 429


>gi|299066647|emb|CBJ37840.1| putative 2-methylthioadenine synthetase [Ralstonia solanacearum
           CMR15]
          Length = 453

 Score =  158 bits (400), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 135/477 (28%), Positives = 224/477 (46%), Gaps = 65/477 (13%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  FV S GC   + DS ++     ++GYE   +   ADL+V+NTC   ++A ++    
Sbjct: 9   PKVGFV-SLGCPKALVDSEQIITQLRAEGYEISGTYGGADLVVVNTCGFIDEAVQESLDA 67

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQ---AEGEEILRR-SPIVNVVVGPQTYYRLPEL 139
           +G         + E G   V+V GC+     A G++I+    P V  V GP   + L E+
Sbjct: 68  IGEA-------LAENGK--VIVTGCLGAKKDAAGQDIITSVHPKVLAVTGP---HALGEV 115

Query: 140 LERARFGKRVVDTDYS-VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
           +E        V T      D F  L +   G        A+L I EGC+  C+FC++P  
Sbjct: 116 ME-------AVHTHLPKPHDPFIDL-VPPQGIKLTPKHYAYLKISEGCNHRCSFCIIPSM 167

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTF 247
           RG  +SR +++V+ EA  L+  GV E+ ++ Q+ +A           W G+ L   K   
Sbjct: 168 RGDLVSRPVAEVMLEAENLLKAGVKELLVISQDTSAYGVDVKFRTGFWNGRPL---KTRM 224

Query: 248 SDLLYSLSEIKG----LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
           ++L+ +L E+       VRL Y   +P       + A G +   +PYL +P+Q     +L
Sbjct: 225 TELVGALGELAAQYGAWVRLHYVYPYPSVDEVMPLMAEGKV---LPYLDVPLQHAHPEVL 281

Query: 304 KSMNRRHTAYEYRQIIDRIRSVR---PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
           K M R   A    + +DRIR+ R   P++ I S FI GFPGET+++F+  +D + +    
Sbjct: 282 KRMKRPANA---EKTLDRIRAWREVCPELTIRSTFIAGFPGETEEEFQTLLDFIAEAELD 338

Query: 361 QAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
           +   F YSP  G   +++   + + V+ ER     +             VG+ + VL+++
Sbjct: 339 RVGCFAYSPVEGATANDLPGALPDEVREERRARFMEVAERVSARRLQRKVGKTLRVLVDE 398

Query: 421 HGKEKGKLVGRS----PWLQSVVLNS------KNHNIGDIIKVRITDVKISTLYGEL 467
             ++ G  +GRS    P +  +V  +      K +  GD + V+IT      L+GE+
Sbjct: 399 VNQDGG--IGRSSADAPEIDGLVYIAPPSKPYKRYKTGDFVSVKITGADGHDLWGEV 453


>gi|157737373|ref|YP_001490056.1| MiaB-like tRNA modifying enzyme [Arcobacter butzleri RM4018]
 gi|114461634|gb|ABI75082.1| MiaB-like tRNA modifying enzyme [Arcobacter butzleri]
 gi|157699227|gb|ABV67387.1| MiaB-like tRNA modifying enzyme [Arcobacter butzleri RM4018]
          Length = 422

 Score =  158 bits (400), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 116/436 (26%), Positives = 215/436 (49%), Gaps = 31/436 (7%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           Q+ + K++GC+ NV+D+  M  M   + +E     ++A+++V+N+C +   A     +++
Sbjct: 8   QKVYFKTFGCRTNVFDTQVM--MSNLKDFEVTLDENEANIVVINSCTVTNSADSTARTYI 65

Query: 85  GRIRNL-KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
             ++ L +N R        V+  GC    +GE + + + + ++    Q       LL   
Sbjct: 66  NSLKKLPQNPR--------VIFTGCGVWTKGETLFKENKVDSLFGHSQKENINDLLLNEE 117

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           RF +     D +  DK    +IV+    + R   AF+ IQEGCD  C++C++PY RG   
Sbjct: 118 RFFEA---GDLTHIDK----TIVEEFVGKSR---AFIKIQEGCDFRCSYCIIPYVRGDAR 167

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           S S  +++++   L  NG  E  L G NV ++  K    +  + + LL  +S IKG+ R+
Sbjct: 168 SYSEDKILEQVTTLASNGFGEFILTGTNVGSYGKK----QHTSLAKLLKKMSLIKGVRRI 223

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R  +  P  + D   K   +   +  +LH+ +Q  S  +LK MNRR+      ++ + +R
Sbjct: 224 RMGSIEPIQIDDEF-KEIINEPFMAKHLHIALQHTSKEMLKIMNRRNKVLSDLELFEFLR 282

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
                 A+ +DFIVG PGET+  ++  M+ + +       +F YS R GTP + M  Q+ 
Sbjct: 283 --ENGYALGTDFIVGHPGETEALWKEAMENLHRFPLTHVHAFTYSKRDGTPSATMKPQIK 340

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
            ++   R   L   + ++  +F      + +EVL+E+  ++ GK +G   +   + ++S 
Sbjct: 341 GDIAKVRYNELINIIEQKNYNFRKEN-KKTLEVLVEQ--EKNGKYIGLDQFFNQIEIDST 397

Query: 444 NHNIGDIIKVRITDVK 459
              +GD + +   +VK
Sbjct: 398 ADLVGDWVYINDYEVK 413


>gi|148380361|ref|YP_001254902.1| RNA modification enzyme, MiaB family [Clostridium botulinum A str.
           ATCC 3502]
 gi|153932059|ref|YP_001384581.1| RNA modification protein [Clostridium botulinum A str. ATCC 19397]
 gi|153935820|ref|YP_001388097.1| RNA modification protein [Clostridium botulinum A str. Hall]
 gi|238065360|sp|A7FVY1|RIMO_CLOB1 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|238065364|sp|A5I4I1|RIMO_CLOBH RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|148289845|emb|CAL83953.1| radical SAM superfamily protein [Clostridium botulinum A str. ATCC
           3502]
 gi|152928103|gb|ABS33603.1| RNA modification enzyme, MiaB family [Clostridium botulinum A str.
           ATCC 19397]
 gi|152931734|gb|ABS37233.1| RNA modification enzyme, MiaB family [Clostridium botulinum A str.
           Hall]
          Length = 445

 Score =  158 bits (400), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 130/441 (29%), Positives = 220/441 (49%), Gaps = 37/441 (8%)

Query: 31  SYGCQMNVYDSLRMEDMFF--SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           S GC  N  DS   E M +  ++  E V    +A +I++NTC   E A E+  + + ++ 
Sbjct: 10  SLGCDKNRIDS---ELMLYKLNEEAELVKDPKEAQVIIVNTCGFIETAKEESINTILQMA 66

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER-ARFGK 147
           + K +        ++VV GC+ Q    E+    P +++++G   Y +L E ++   + G+
Sbjct: 67  SYKKTH----NCKVLVVTGCLTQRYKGELKELIPEMDIMLGVNDYDKLLESIKVFLKSGE 122

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNR---KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
           +      S   K+    I +G  NR       TA++ I EGC+ FCT+C +P  RG   S
Sbjct: 123 K------SFYHKYSDTKINEG--NRILTTPTYTAYVRIAEGCNNFCTYCAIPRIRGKYRS 174

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R    ++ E   L   GV EI L+ Q+   + G  + G+K    +LL  +S+++G+  +R
Sbjct: 175 RKKENILKEVENLAKQGVKEIILIAQDTTMY-GIDIYGKK-VLHELLRDISKVEGVKWIR 232

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
               +P +++  LI+   + D +  YL LP+Q  S+ +LK M R+ T      II ++R 
Sbjct: 233 LLYCYPEEITKELIEEIKNNDKVCKYLDLPIQQISNSVLKRMGRKTTKETIINIIKKLRK 292

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD- 383
               I + +  IVGFPGET+ +F    + V  +   +   FKYS   GT  + M EQ+D 
Sbjct: 293 EIEGITLRTSLIVGFPGETEGEFSELKEFVSDVKLDKLGVFKYSKEEGTSAALMEEQIDE 352

Query: 384 --ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQS 437
             +  + E ++ LQ+ + +     N   +G+  EV++E  G ++    GR    SP +  
Sbjct: 353 EIKEKREEEIMILQQSISK---DINKEKIGKTYEVIVE--GTKEDMYYGRNYEMSPEIDG 407

Query: 438 VVLNSKNHN--IGDIIKVRIT 456
            +   K+ N  IGDIIKV++T
Sbjct: 408 EIYFEKDENVKIGDIIKVKVT 428


>gi|289209542|ref|YP_003461608.1| MiaB-like tRNA modifying enzyme YliG [Thioalkalivibrio sp. K90mix]
 gi|288945173|gb|ADC72872.1| MiaB-like tRNA modifying enzyme YliG [Thioalkalivibrio sp. K90mix]
          Length = 453

 Score =  158 bits (400), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 128/459 (27%), Positives = 210/459 (45%), Gaps = 35/459 (7%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           QR    S GC   + DS ++     ++GYE     D ADL+V+NTC   + A  +    +
Sbjct: 13  QRVGFVSLGCPKALVDSEQILTRLRAEGYEIAADYDGADLVVVNTCGFIDDAVAESLDAI 72

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           G   +  N R        V+V GC+ + + E I    P V  V GP  +  +        
Sbjct: 73  GEAMD-ANGR--------VIVTGCLGK-DAERIHETHPGVLAVTGPHAFDEV-------- 114

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G  V +        FE L    G     R   A+L I EGC+  C+FC++P  RG  +S
Sbjct: 115 VGA-VHEHLPPPATPFESLVPPQGIRLTPRHY-AYLKISEGCNHRCSFCIIPSLRGDLVS 172

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAW-----RGKGLDGEKCTFSDLLY---SLSE 256
           R + +V+ EA +L   GV EI ++ Q+ +A+        G  G +   SD+ +   +L +
Sbjct: 173 RPIGEVLAEAERLAAAGVREILVISQDTSAYGVDVKYRTGFHGGRPIRSDIAHLAEALGQ 232

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           +   VRL Y   +P       +   G+   ++PYL +P+Q G  R+LK+M R   A    
Sbjct: 233 LGIWVRLHYVYPYPHVDRLIPLMGSGEDGGILPYLDMPLQHGHPRVLKAMRRPAAAERVL 292

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
           + I + R   PD+ + S FIVGFPGET+ +F   ++ + +    +  +F YSP  G   +
Sbjct: 293 ERIAKWREQVPDLTLRSTFIVGFPGETEAEFETLLEFLHEAQLDRVGAFAYSPVEGAAAN 352

Query: 377 NMLEQVDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSP 433
            + + V E V+ ERL   + +Q ++   ++         ++   +   G    +    +P
Sbjct: 353 ELADPVPEAVREERLARFMDVQARISADRLRRRIGSQPVVLVDEVHADGTVIARSAAEAP 412

Query: 434 WLQSVV----LNSKNHNIGDIIKVRITDVKISTLYGELV 468
            +  V+    ++  + +IGD I+V ITD     L  EL 
Sbjct: 413 EIDGVIRVAGIDPTSVDIGDFIEVAITDTDEHDLIAELA 451


>gi|17546355|ref|NP_519757.1| hypothetical protein RSc1636 [Ralstonia solanacearum GMI1000]
 gi|81504984|sp|Q8XYX0|RIMO_RALSO RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|17428652|emb|CAD15338.1| putative 2-methylthioadenine synthetase protein [Ralstonia
           solanacearum GMI1000]
          Length = 453

 Score =  158 bits (400), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 135/477 (28%), Positives = 224/477 (46%), Gaps = 65/477 (13%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  FV S GC   + DS ++     ++GYE   +   ADL+V+NTC   ++A ++    
Sbjct: 9   PKVGFV-SLGCPKALVDSEQIITQLRAEGYEISGTYGGADLVVVNTCGFIDEAVQESLDA 67

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQ---AEGEEILRR-SPIVNVVVGPQTYYRLPEL 139
           +G         + E G   V+V GC+     A G++I+    P V  V GP   + L E+
Sbjct: 68  IGEA-------LAENGK--VIVTGCLGAKKDAAGQDIITSVHPKVLAVTGP---HALGEV 115

Query: 140 LERARFGKRVVDTDYS-VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
           +E        V T      D F  L +   G        A+L I EGC+  C+FC++P  
Sbjct: 116 ME-------AVHTHLPKPHDPFIDL-VPPQGIKLTPKHYAYLKISEGCNHRCSFCIIPSM 167

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTF 247
           RG  +SR +++V+ EA  L+  GV E+ ++ Q+ +A           W G+ L   K   
Sbjct: 168 RGDLVSRPVAEVMLEAENLLKAGVKELLVISQDTSAYGVDVKFRTGFWNGRPL---KTRM 224

Query: 248 SDLLYSLSEIKG----LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
           ++L+ +L E+       VRL Y   +P       + A G +   +PYL +P+Q     +L
Sbjct: 225 TELVGALGELAAQYGAWVRLHYVYPYPSVDEVMPLMAEGKV---LPYLDVPLQHAHPEVL 281

Query: 304 KSMNRRHTAYEYRQIIDRIRSVR---PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
           K M R   A    + +DRIR+ R   P++ I S FI GFPGET+++F+  +D + +    
Sbjct: 282 KRMKRPANA---EKTLDRIRAWREVCPELTIRSTFIAGFPGETEEEFQTLLDFIAEAELD 338

Query: 361 QAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
           +   F YSP  G   +++   + + V+ ER     +             VG+ + VL+++
Sbjct: 339 RVGCFAYSPVEGATANDLPGALPDEVREERRARFMEVAERVSARRLQRKVGKTLRVLVDE 398

Query: 421 HGKEKGKLVGRS----PWLQSVVLNS------KNHNIGDIIKVRITDVKISTLYGEL 467
             ++ G  +GRS    P +  +V  +      K +  GD + V+IT      L+GE+
Sbjct: 399 VNQDGG--IGRSSADAPEIDGLVYIAPPSKPYKRYKAGDFVSVKITGADGHDLWGEV 453


>gi|149371257|ref|ZP_01890743.1| 2-methylthioadenine synthetase [unidentified eubacterium SCB49]
 gi|149355395|gb|EDM43954.1| 2-methylthioadenine synthetase [unidentified eubacterium SCB49]
          Length = 436

 Score =  158 bits (400), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 133/456 (29%), Positives = 223/456 (48%), Gaps = 51/456 (11%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC----HIREKAAEKVYSFL 84
           V + GC  NVYDS  +     +   E V+  ++ +++V+NTC    + +E++   +  F+
Sbjct: 13  VVTLGCSKNVYDSEVLMGQLKANNKEVVHE-EEGNVVVINTCGFIANAKEESVNTILEFV 71

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
                    + +EG    V V GC+++    ++ +  P V+   G      LP LL    
Sbjct: 72  --------QKKEEGIVDKVFVTGCLSERYKPDLQKEIPDVDQYFGTT---ELPGLL---- 116

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
              + +  DY  E   ERL+     Y       A+L I EGCD+ C+FC +P  RG   S
Sbjct: 117 ---KALGADYKHELIGERLTTTPKNY-------AYLKIAEGCDRPCSFCAIPIMRGKHKS 166

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGL--V 261
             +  +V EA KL  NGV E+ L+ Q++  +   GLD  +K   ++LL  L++++G+  +
Sbjct: 167 TPMEDLVIEAEKLAANGVKELILIAQDLTYY---GLDLYKKRNLAELLEKLAKVEGIEWI 223

Query: 262 RLRYT--TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           RL Y   T  P D+   + K       +  Y+ +P+Q  +D ILKSM R  T  +  +++
Sbjct: 224 RLHYAFPTGFPMDVLSLMHKEPK----ICNYIDIPLQHIADPILKSMRRGTTKAKTTKLL 279

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
              R+  P++AI +  IVG+PGET +D+    + V ++ + +   F YS    T   N+ 
Sbjct: 280 QDFRAAVPEMAIRTTLIVGYPGETQEDYETLREWVREMRFERLGCFTYSHEENTHAYNLE 339

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWL 435
           + V E VK ER   + +   +     N   +G    VLI++  KE    VGR    SP +
Sbjct: 340 DDVPEAVKMERANEIMEIQSQISWELNQQKIGNEYRVLIDR--KEGAYYVGRTEFDSPDV 397

Query: 436 QS-VVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468
            + V++N++   +  G+   V+IT  +   LY E+V
Sbjct: 398 DNEVLINAEEGYLRTGEFFNVKITGAEDFDLYAEVV 433


>gi|110637073|ref|YP_677280.1| 2-methylthioadenine synthetase [Cytophaga hutchinsonii ATCC 33406]
 gi|123354783|sp|Q11XC6|RIMO_CYTH3 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|110279754|gb|ABG57940.1| SSU ribosomal protein S12P methylthiotransferase [Cytophaga
           hutchinsonii ATCC 33406]
          Length = 437

 Score =  158 bits (400), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 124/449 (27%), Positives = 210/449 (46%), Gaps = 38/449 (8%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQG--YERVNSMDDADLIVLNTCHIREKAA-EKVYSFLGRI 87
           + GC  N+ DS  +       G   E  +  D+++++V+NTC   + A  E + + L  I
Sbjct: 15  TLGCSKNLVDSENLLTQLRGNGIEAEHESKNDNSNVVVINTCGFIDNAKQESIDTILRYI 74

Query: 88  RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147
              +N  I +     + V+GC++Q   +++ R  P V+   G      LP +L++ R   
Sbjct: 75  DAKENGLIDK-----IYVSGCLSQRYKDDMEREMPQVDAFFGSN---ELPAILKKFR--- 123

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
                DY  E   ERL      Y       A++ I EGCD+ C+FC +P  RG  +S  +
Sbjct: 124 ----ADYKHELVGERLLTTPSHY-------AYVKIAEGCDRPCSFCAIPVMRGKHVSTPM 172

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYT 266
             +V +A+ +   G  E+ L+ Q++  +   GLD  +K   SDLL +LS+++G+  +R  
Sbjct: 173 EDLVKQAKGMAAKGTKELILIAQDLTYY---GLDIYKKRNLSDLLKNLSDVEGIDWIRLQ 229

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
            ++P      ++    +   +  Y+ +P+Q GS  +LK M R     +   +I  IR   
Sbjct: 230 YAYPSGFPLDVLDVMAERSNICKYIDMPLQHGSSDMLKLMRRGIDRPKTEDLIKTIRDKV 289

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           P IA  +  I+G PGET+ DF      V++  + +  +F YS    T   +M + + +  
Sbjct: 290 PGIAFRTTMIIGHPGETEKDFDELCSFVEEQRFDRLGAFTYSHEEHTHSYSMEDTIPQEE 349

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVVLNS 442
           K ER   +           N+  +G   +VL ++  KE G  +GR    SP + + V+ S
Sbjct: 350 KEERQATIMSIQEGISAELNEKKIGNTYKVLFDR--KEGGYFIGRTEHDSPEVDNEVMVS 407

Query: 443 KNHN---IGDIIKVRITDVKISTLYGELV 468
                  IGD   V+I D     L+GE+V
Sbjct: 408 AKDQYVRIGDFANVKINDAAEFDLFGEIV 436


>gi|307128628|ref|YP_003880658.1| putative MiaB-like protein [Candidatus Sulcia muelleri CARI]
 gi|306483090|gb|ADM89960.1| putative MiaB-like protein [Candidatus Sulcia muelleri CARI]
          Length = 431

 Score =  158 bits (400), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 116/424 (27%), Positives = 210/424 (49%), Gaps = 31/424 (7%)

Query: 33  GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92
           GC++N  ++  + + F  +GYE V     AD+ ++NTC +  K A+K    L RI     
Sbjct: 12  GCKLNFAETDTIINKFLKKGYEYVKFRSFADIYIINTCSV-TKNADKELKKLVRIA---- 66

Query: 93  SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDT 152
             IK   +  +V  GC +Q   +EI   + I ++++G +  + +   L      K+    
Sbjct: 67  --IKNNVNGFIVAIGCYSQVNPKEISLINGI-DLIIGSKEKFNIINYLT-----KKNNAN 118

Query: 153 DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVD 212
            YS   K E + I    Y++     +FL IQ+GCD  C++C +P  RG+  S ++  ++ 
Sbjct: 119 IYSCSLKEENMFI--PSYSKLNRTRSFLKIQDGCDYKCSYCTIPKARGLSRSDNIKNIIK 176

Query: 213 EARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLL----YSLSEIKGLVRLRYTTS 268
            A+ +I  G+ EI L G N+  +        +  F +L+    Y L++IK   R+R ++ 
Sbjct: 177 YAKNIIKQGIKEIVLTGVNIGDFGKIYNKKNESNFLELIQAMEYYLNDIK---RIRISSI 233

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
            P  +SD +I       + + + H+P+QSGSD IL  M RR++   Y + I +I ++ P 
Sbjct: 234 EPNLLSDDIINFISKSKIFVNHFHIPLQSGSDEILNKMKRRYSKKIYLERIKKIFNIMPY 293

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
             I +D IVGFPGE +++F  T  L+ ++  +    F +S R  T    + + + + +++
Sbjct: 294 ACIGTDVIVGFPGEKEENFLETYSLLSELEISYLHVFPFSERKNTEAFFLKDSITQEIRS 353

Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG--------RSPWLQSVVL 440
           +R   L K  ++++ +F    + +   VL E + K+ G + G        ++ W   +V 
Sbjct: 354 KRSKILIKLSKKKKYNFYRKHINKKKNVLFE-NKKKSGFIYGYTDNYIRTKTNWKSELVN 412

Query: 441 NSKN 444
             KN
Sbjct: 413 KIKN 416


>gi|86133829|ref|ZP_01052411.1| MiaB-like tRNA modifying enzyme YliG [Polaribacter sp. MED152]
 gi|85820692|gb|EAQ41839.1| MiaB-like tRNA modifying enzyme YliG [Polaribacter sp. MED152]
          Length = 451

 Score =  158 bits (400), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 133/464 (28%), Positives = 229/464 (49%), Gaps = 46/464 (9%)

Query: 20  QCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQG----YERVNSMDDADLIVLNTCHIREK 75
           + I   +  V + GC  NVYDS  +     + G    +E VN  DD +++V+NTC    K
Sbjct: 4   KTIKKNKINVVTLGCSKNVYDSEVLMGQLKANGKNVVHEDVN--DDGNIVVINTCGFIGK 61

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDL-LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYY 134
           A E+    +     L  ++ KE G++  V V+GC+++    ++    P V+   G    +
Sbjct: 62  AKEESIDTI-----LHYAKRKEAGEVDKVFVSGCLSERYKPDLEAEIPNVDQYFGT---H 113

Query: 135 RLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCV 194
            LP LL       +V++ DY  E   ERL+     Y       A+L I EGC++ C+FC 
Sbjct: 114 DLPNLL-------KVLEADYKHELIGERLTTTPKHY-------AYLKIAEGCNRPCSFCA 159

Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYS 253
           +P  RG   S  +  +V EA KL + G+ EI L+ Q++  +   GLD  +K   ++LL +
Sbjct: 160 IPLMRGKHRSTPIEDLVTEATKLAEKGIKEIMLIAQDLTYY---GLDIYKKRALAELLEA 216

Query: 254 LSEIKGL--VRLRYT--TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
           L ++ G+  +R+ Y   T  P D+ + + +       +  YL +P+Q  +  +LKSM R 
Sbjct: 217 LVKVDGIEWIRMHYAFPTGFPMDVLEVMKREPK----VCNYLDIPLQHINTELLKSMKRG 272

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369
            T  +   +I + R   P++AI +  IVG+PGET++ F+   D V+++ + +  +F+YS 
Sbjct: 273 TTHEKTTALIHKFREAVPEMAIRTTLIVGYPGETEEMFQELKDWVEEMRFERLGAFEYSH 332

Query: 370 RLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE--KGK 427
              T    + + V   VK +R+  + +   +     N   VG+    L ++   E   G+
Sbjct: 333 EENTGAYVLEDDVPAEVKFKRVNEIMEVQSQISWELNQQKVGKTFRCLFDRKDGEYFYGR 392

Query: 428 LVGRSPWLQS-VVLNSKNH--NIGDIIKVRITDVKISTLYGELV 468
               SP + + V+++++ H   IG+ I V I +     LYG  V
Sbjct: 393 TESDSPDVDNDVLVDAREHYIKIGEFIDVEIYEAGDYDLYGTPV 436


>gi|294011253|ref|YP_003544713.1| 2-methylthioadenine synthetase [Sphingobium japonicum UT26S]
 gi|292674583|dbj|BAI96101.1| 2-methylthioadenine synthetase [Sphingobium japonicum UT26S]
          Length = 468

 Score =  158 bits (400), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 139/463 (30%), Positives = 214/463 (46%), Gaps = 54/463 (11%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC   + DS R+     S GY+       AD++++NTC   + A E+    +G     
Sbjct: 28  SLGCPKALVDSERILTKLRSDGYQMSADYAGADVVLVNTCGFLDSAKEESLEAIGEA--- 84

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               I E G   V+V GC+   E E I  + P V  V G   Y    E +  A     V 
Sbjct: 85  ----IAENGR--VIVTGCMGN-EAELIRAKFPQVLAVTGAHQY----EAVVNA-----VH 128

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
           +    + + F  L + +GG        ++L I EGC+  C+FC++P  RG   SR +  V
Sbjct: 129 EASPPIPNAFVDL-VPEGGLKLTPRHYSYLKISEGCNHRCSFCIIPSLRGDLASRRIDAV 187

Query: 211 VDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYSLSEIKG 259
           + EA KL+  G  E+ ++ Q+ +A           W+G+ +       +  L  L   +G
Sbjct: 188 LREAEKLVHAGTKELLIISQDTSAYGVDTRHEARQWKGREVRAHMTDLARELGQLRTAEG 247

Query: 260 ---LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
               VRL Y   +P    D +I    D  +L PYL +P Q  +  ILK+M R   A E +
Sbjct: 248 TPPWVRLHYVYPYPH--VDHVIPLMAD-GLLTPYLDIPFQHAAPSILKAMRR--PANEAK 302

Query: 317 QIIDRIRSVR---PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
            ++DRIR  R   PDIAI S F+VGFPGET+ DF   +  +D+    +  +F++ P  G 
Sbjct: 303 -VLDRIRKWRDICPDIAIRSSFVVGFPGETEADFDYLLQWLDEAQLDRVGAFRFEPVEGA 361

Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK--EKGKL--V 429
             +++   V E VK ER   + ++      +   A VG+++ V+I++ G+  E G +   
Sbjct: 362 AANDLPGAVPEEVKEERYQRIMERTAAISAARLQAKVGRVLPVIIDEVGEADEDGSIGAT 421

Query: 430 GRS----PWLQ-SVVLNSKNHNI--GDIIKVRITDVKISTLYG 465
            RS    P +  +V L      +  G I+ V I D     LYG
Sbjct: 422 ARSQADAPEIDGNVFLRDVGEGLAPGSILNVLIEDADEHDLYG 464


>gi|304384048|ref|ZP_07366503.1| 2-methylthioadenine synthetase [Prevotella marshii DSM 16973]
 gi|304334836|gb|EFM01111.1| 2-methylthioadenine synthetase [Prevotella marshii DSM 16973]
          Length = 443

 Score =  158 bits (400), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 126/437 (28%), Positives = 200/437 (45%), Gaps = 39/437 (8%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N  ++     +    G   V   + AD+ ++NTC + E A  K    + R+   
Sbjct: 16  TLGCKLNFSETSTFGQLLQEMGVRTVAEGEYADICLINTCSVTEVADHKCRQAIRRM--- 72

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR----FG 146
               ++E     VVV GC AQ   + I      V++V+G      L + L RA      G
Sbjct: 73  ----VREHPGAFVVVTGCYAQLAPDAIAGIEG-VDLVLGANEKADLIQHLSRAWSEELAG 127

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           K    +      +    +      NR R    FL +Q+GCD FCT+C +P+ RG   + S
Sbjct: 128 KHTTCSITGTTAEIRSFAPSCARGNRTR---YFLKVQDGCDYFCTYCTIPFARGRSRNPS 184

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
           +  +V++A      G  EI L G N+    G+    E     +L+ +L  ++G+ R R +
Sbjct: 185 IESLVEQAETAARQGGKEIVLTGVNI----GEFSTAEGLGLLELVKTLDCVEGIQRFRIS 240

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
           +  P  + D LI    +    MP+ H+P+QSGSD +L+ M R +    + + +D IR   
Sbjct: 241 SIEPDLLDDELIAYCAESRAFMPHFHIPLQSGSDAVLRLMERHYDTKLFAEKVDTIRRYM 300

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG---SNMLEQVD 383
           PD  I  D +VG  GET + F  T   +D +   Q   F YS R GT       ++   D
Sbjct: 301 PDAFIGVDVMVGARGETPEYFDETYRFLDSLDITQLHVFPYSERPGTRALRIPYIVSDHD 360

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK--HGKE----------KGKLVGR 431
           + ++++RLL L  +   +  +F    +G   EVL+EK  HGK           + +L G+
Sbjct: 361 KRLRSKRLLELSDR---KTRAFYAKHIGTTAEVLLEKGTHGKAVMHGFTRNYIRVELRGQ 417

Query: 432 SP--WLQSVVLNSKNHN 446
           +P   L  VVL    HN
Sbjct: 418 APDNHLVHVVLGDFTHN 434


>gi|161528769|ref|YP_001582595.1| MiaB-like tRNA modifying enzyme [Nitrosopumilus maritimus SCM1]
 gi|160340070|gb|ABX13157.1| MiaB-like tRNA modifying enzyme [Nitrosopumilus maritimus SCM1]
          Length = 422

 Score =  158 bits (400), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 129/451 (28%), Positives = 217/451 (48%), Gaps = 40/451 (8%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + FV+SYGC  +  DS  +  +  + G+  V    ++DL V+ TC +++  A K+   + 
Sbjct: 3   KIFVESYGCSASFADSEMISGLILNGGHTLVEDSSESDLNVVVTCSVKDATANKM---VH 59

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           RI++LK   +        VVAGC+ +AE E + + S   +++ GP +  +  ++++    
Sbjct: 60  RIKSLKTKPL--------VVAGCLPKAEKETVEKFSENASLL-GPNSLGKTLQVIDSTLK 110

Query: 146 GKRVV---DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           G++ +   DTD         LS V     R       + I  GC   CTFC    ++G  
Sbjct: 111 GRKKIALEDTD---------LSKVGLPKVRLNPAVGIVEIASGCMSECTFCQTKISKGDL 161

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            S  L  +V + +  I+ G  E+ L   +   +   G D        L+ ++SEI     
Sbjct: 162 QSYRLGDIVRQVKTEINEGCKEVWLTSTDNGCY---GFD-IGTDLPSLINAVSEIPEEFM 217

Query: 263 LRYTTSHPRDMS---DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           +R    +P  M    + LI+++ D D +  +LH+PVQSGSD++L  M R HTA  +R+I+
Sbjct: 218 IRVGMMNPMYMPRIKEKLIESY-DNDKVFKFLHIPVQSGSDKVLHDMKRGHTAGTFREIV 276

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            + R   PD  IS+D IVGFP ET +DF  T++L+D+         KYS R GT  +   
Sbjct: 277 KKARERFPDFTISTDIIVGFPSETKEDFEKTVELLDETRPDVVNLSKYSARPGTEAAEW- 335

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE--KGKLVGRSPWLQS 437
           EQ+D      R   + +++ +  +  N   +G   +VL ++   E  KG+     P    
Sbjct: 336 EQIDVAEVKSRSKRIFEQINKISLENNKKWIGWKGDVLFDEQTDEGIKGRNFAYKP---- 391

Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            V   +  +IG +  V I D   ++L G++ 
Sbjct: 392 -VFVPEQVDIGQLHAVEIIDATQNSLLGKIA 421


>gi|302340232|ref|YP_003805438.1| MiaB-like tRNA modifying enzyme YliG [Spirochaeta smaragdinae DSM
           11293]
 gi|301637417|gb|ADK82844.1| MiaB-like tRNA modifying enzyme YliG [Spirochaeta smaragdinae DSM
           11293]
          Length = 441

 Score =  158 bits (399), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 136/446 (30%), Positives = 205/446 (45%), Gaps = 36/446 (8%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA-AEKVYSF 83
           +R++++  GC  N  D+  +       G++ V     ADLI++N+C   E A  E V   
Sbjct: 4   KRYYIEKLGCAKNQVDAEIIAARLDDAGWQYVEDAGAADLIIINSCGFIEAARQEAVNVT 63

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           L    +   +RI        + AGC+AQ  G  +L     ++ V G      + ++LE  
Sbjct: 64  LSARADYPKARI--------LFAGCMAQRYGARLLEEMTEIDGVFGNFAVDDITDILEPL 115

Query: 144 RFGKRVV--DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
              KR V    +  +     RL    G        +++L I EGC+ FC++C +P  RG 
Sbjct: 116 FEDKRPVLLPEETKLACNRNRLFSFPG--------SSYLRISEGCNHFCSYCAIPLIRGS 167

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGL 260
             S  + QVV EA +LI NGV EI L+ Q++ A+   G D G    F +LL  LS ++G 
Sbjct: 168 LRSVPMEQVVKEADRLIRNGVKEINLVAQDLAAY---GTDQGTASLFPELLRRLSSLEGD 224

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
             LR    HP      +         ++PY  +P+Q    +IL SM RR  A  Y  +I 
Sbjct: 225 FWLRMLYIHPDHFPKEIFPILQADSRILPYFDIPLQHAHPKILSSMGRRGDAEGYLALIR 284

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM-- 378
            IRS  PD  I S F++G+PGE   +  A    + +     A  F +S   GT  + +  
Sbjct: 285 EIRSALPDATIRSTFLLGYPGEGGKEAAALESFIAEARLDWAGFFLFSREEGTKAALLRG 344

Query: 379 -LEQVDENVKAERLLCLQKKLREQQVSFNDAC--VGQIIEVLIEKHGKEKGKLVGRSPWL 435
            L Q      AER L   +KL+E  +S   A   VG   +VLIE+  KE+   +GR+ W 
Sbjct: 345 PLMQRLAMPAAERRLRRLQKLQE-SISMERAALRVGIETKVLIEEPVKEEDVALGRA-WF 402

Query: 436 Q------SVVLNSKNHNIGDIIKVRI 455
           Q      + V+++     GD +  RI
Sbjct: 403 QAPEVDGATVVSAPALKAGDWMTCRI 428


>gi|254497963|ref|ZP_05110727.1| Fe-S oxidoreductase [Legionella drancourtii LLAP12]
 gi|254352857|gb|EET11628.1| Fe-S oxidoreductase [Legionella drancourtii LLAP12]
          Length = 435

 Score =  158 bits (399), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 141/461 (30%), Positives = 217/461 (47%), Gaps = 59/461 (12%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC   + DS R+     +QGYE V+S  DA ++V+NTC   + A ++       +  +
Sbjct: 9   SLGCPKALVDSERIITQLRAQGYELVSSYQDAGVVVINTCGFIDSAVKE------SLDTI 62

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
           K +  + G    V+V GC+  A+ + I    P V  V G   Y             + VV
Sbjct: 63  KEAMAENGR---VIVTGCLG-AKADVIKEACPDVLHVSGAHAY-------------EEVV 105

Query: 151 DTDY----SVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           +  +       D F +L    G     R   A+L I EGC++ CTFC++P  RG   S  
Sbjct: 106 NAVHEHLPPPADPFMQLVPPQGIKLTPRHY-AYLKISEGCNQKCTFCIIPTMRGKLQSYP 164

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYSLS 255
           L QV+ EA+KL + GV EI ++ Q+ +A           W+GK ++     F DL   L 
Sbjct: 165 LVQVLSEAKKLKEAGVNEILVISQDTSAYGVDTRYQPVTWQGKTVNTR---FYDLCEQLG 221

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
           E+   VRL Y   +P    D +I    D  +++PYL +P+Q  S R+LK+M R  ++   
Sbjct: 222 ELGIWVRLHYVYPYPH--VDEIIPLMRD-GLILPYLDIPLQHASSRVLKAMKRPASSENT 278

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
              I   R V PDI + S FIVGFPGET+++F   +D + +    +   FKYSP  G   
Sbjct: 279 LMRIAAWREVCPDITLRSTFIVGFPGETEEEFEELLDFLAEAQLDRVGCFKYSPVEGAKA 338

Query: 376 SNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS 432
           +++   V E VK E   R + LQ ++   ++      +G    VLI++   E  +++ RS
Sbjct: 339 NDLANPVPEEVKEERYHRFMQLQAEISRTKLQNK---IGTTQTVLIDEITPE--QIIARS 393

Query: 433 ----PWLQSVVL--NSKNHNIGDIIKVRITDVKISTLYGEL 467
               P +  +V+   +    IG    V I D     L+ E 
Sbjct: 394 KSDAPEIDGLVILPPTPGIKIGSFANVTIIDSDDYDLFAEF 434


>gi|219853312|ref|YP_002467744.1| MiaB-like tRNA modifying enzyme [Methanosphaerula palustris E1-9c]
 gi|219547571|gb|ACL18021.1| MiaB-like tRNA modifying enzyme [Methanosphaerula palustris E1-9c]
          Length = 420

 Score =  158 bits (399), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 116/422 (27%), Positives = 204/422 (48%), Gaps = 52/422 (12%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           +V +  +++ YGC  N  D+L + ++  +QG   V + ++AD +VLNTC +     E++ 
Sbjct: 21  LVGKDVYLEEYGCTFNHADTLALVEVLKAQGCTIVPTPEEADAVVLNTCTVI-GPTERLM 79

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
                   L+  R   G DL +   GC+   + + I         V  P+    +P   E
Sbjct: 80  --------LRQMRRYSGHDLYLT--GCMPAVQMDAICE-------VCSPKV---IPP--E 117

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
             R    +V+T                           + + +GC   C++C+    RG 
Sbjct: 118 EIRAAYTLVNTTVP-------------------SAIGVVQVGQGCAGRCSYCITRNARGP 158

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
             S     + +  ++ +DNG  E+ L GQ++++W   GLD  + +  DLL  ++   G  
Sbjct: 159 LQSFQPPDIYNRVQQAVDNGAVEVQLTGQDLSSW---GLDLGR-SLPDLLRGITAFPGDY 214

Query: 262 RLRYTTSHPR---DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           RLR    +P     + D LI A+   D +  +LHLP+QSGSDR+L +MNR +TA + +QI
Sbjct: 215 RLRLGMMNPATVLPILDDLIAAYQS-DRIFQFLHLPIQSGSDRVLAAMNRSYTASDVQQI 273

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           +   R V PD+ + +D IVGFPGETD DF  T+ ++  +   +    +YS R GTP ++ 
Sbjct: 274 LRAFREVHPDLTLMTDLIVGFPGETDQDFEETLQMITALSPNKVNMTRYSGRPGTPAAD- 332

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSV 438
           L  + ++VK +R   +   +       N   +G+ + V++ +  ++ G ++ R    Q++
Sbjct: 333 LPDLQDSVKKDRSRAVNDHVTTLYHQKNSRWIGEEVGVVVTEQ-RKLGSVITRDERYQNI 391

Query: 439 VL 440
           V+
Sbjct: 392 VI 393


>gi|121595452|ref|YP_987348.1| ribosomal protein S12 methylthiotransferase [Acidovorax sp. JS42]
 gi|238065275|sp|A1WAJ7|RIMO_ACISJ RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|120607532|gb|ABM43272.1| SSU ribosomal protein S12P methylthiotransferase [Acidovorax sp.
           JS42]
          Length = 463

 Score =  158 bits (399), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 136/486 (27%), Positives = 216/486 (44%), Gaps = 60/486 (12%)

Query: 14  VSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIR 73
           +SQ +     P+  FV S GC  N+ DS  +     ++GYE   + + ADL+++NTC   
Sbjct: 1   MSQALSPAKTPKIGFV-SLGCPKNLTDSELLLTQLSAEGYETSKTFEGADLVIVNTCGFI 59

Query: 74  EKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEE----ILRRSPIVNVVVG 129
           ++A ++    +G         + E G   V+V GC+    GE     +    P V  V G
Sbjct: 60  DEAVKESLDTIGEA-------LAENGK--VIVTGCLGARAGETGGNLVKEVHPSVLAVTG 110

Query: 130 PQTYYRLPELLERARFGKRVVDTD-YSVEDKFERLSIVDGGYNRKRGVT------AFLTI 182
           P       E++E       VV T      D F  L +V GG+  + G+       A+L I
Sbjct: 111 PHAAQ---EVME-------VVHTHCPKPHDPF--LDLVPGGFG-EAGIKLTPRHYAYLKI 157

Query: 183 QEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-------- 234
            EGC+  CTFC++P  RG  +SR +  V+ EA+ L + GV E+ ++ Q+ +A        
Sbjct: 158 SEGCNHRCTFCIIPSMRGDLVSRPVGDVLKEAKALFEGGVKELLVISQDTSAYGVDVKYR 217

Query: 235 ---WRGKGLDGEKCTFSDLLYSLSEIKG-LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY 290
              W GK +          L  ++   G  VRL Y   +P       + A G   +++PY
Sbjct: 218 TGFWDGKPVKTRTLELVQKLGEMAATYGAWVRLHYVYPYPSVDDIIPLMAQG---LVLPY 274

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
           L +P Q     +LK M R  +  +  + I R R   P+I I S FI GFPGET+++F+  
Sbjct: 275 LDVPFQHSHPDVLKRMKRPASGEKNLERILRWREACPEIVIRSTFIAGFPGETEEEFQHL 334

Query: 351 MDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACV 410
           +D V +    +A  F YS   G   + +   +   ++ ER         E   +     V
Sbjct: 335 LDFVREAQIDRAGCFAYSDVEGAAANELPGMLPMELREERRARFMAVAEEVSTAKLQRRV 394

Query: 411 GQIIEVLIEK-----HGKEKGKLVGRSPWLQSVVL------NSKNHNIGDIIKVRITDVK 459
           GQ ++VL+++          G+    +P +  VV        SK + +GD +K RI   +
Sbjct: 395 GQTMQVLVDQAVGLGKKGGVGRSYADAPEIDGVVHLLPPEKFSKTYKVGDFVKARIVGTQ 454

Query: 460 ISTLYG 465
              L G
Sbjct: 455 GHDLVG 460


>gi|159904885|ref|YP_001548547.1| MiaB-like tRNA modifying protein [Methanococcus maripaludis C6]
 gi|159886378|gb|ABX01315.1| MiaB-like tRNA modifying enzyme [Methanococcus maripaludis C6]
          Length = 425

 Score =  158 bits (399), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 123/455 (27%), Positives = 234/455 (51%), Gaps = 44/455 (9%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + +++ YGC +N  D+  +++     + +E  +++DD+D+IV+NTC +R++   ++ S +
Sbjct: 2   KIYIEGYGCTLNTADTEIIKNSVNEFEDFELTDNVDDSDIIVINTCIVRQETEHRMISRI 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER-- 142
              ++L         D  VVVAGC+A+A  ++I     + +V++ P+       +L+   
Sbjct: 62  EYFKSL---------DKKVVVAGCMAKALPKKI---KNLADVLIMPREAQYSGIILKNNL 109

Query: 143 -----ARFGKRVVDTDYSVEDKF-ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
                 + GK   + + + ED+  E++  V       +G+   L I EGC   CT+C+V 
Sbjct: 110 LKGCSEKNGKS--NENLNFEDQLNEKIKKVSS-----QGLITALPICEGCLGSCTYCIVK 162

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256
             RG  +S     +  +A +L+  G   + +  Q+   +   GLD    +  +L+  +SE
Sbjct: 163 RARGNLVSYDRDLIFKKAEELVKTGTKCLLVTAQDTACY---GLDNND-SLPNLINDISE 218

Query: 257 IKGLVRLRYTTSHPR---DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
           I     +R    H +    + D LI++     V+  +LHLP+QSG D++LK MNR ++  
Sbjct: 219 IPEKFAMRIGMMHAKFAEPLLDELIESFKSEKVV-KFLHLPIQSGDDQVLKDMNRNYSVD 277

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
           E+  +++  +    ++  ++D IVGFP ET++ F+ T+++V KI      + KYS R  T
Sbjct: 278 EFISVLNEFKLKIKNLNFTTDVIVGFPTETEEAFQNTLEIVKKIKPDFTHAAKYSQRKYT 337

Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSP 433
             + +L+QVD  ++ ER   L +  RE     N   +G+  E+L+ K        +G + 
Sbjct: 338 KAA-VLKQVDTKIRKERSEILNELRRELSYENNKRHIGETFEILVTKTN------LGVTN 390

Query: 434 WLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
             ++V+ + +N  IG+  +V++T  K   L G+L+
Sbjct: 391 NCKNVIFD-ENAKIGEFRQVKVTGAKTFGLSGKLL 424


>gi|160890923|ref|ZP_02071926.1| hypothetical protein BACUNI_03368 [Bacteroides uniformis ATCC 8492]
 gi|317479661|ref|ZP_07938785.1| MiaB-like tRNA modifying enzyme [Bacteroides sp. 4_1_36]
 gi|156859922|gb|EDO53353.1| hypothetical protein BACUNI_03368 [Bacteroides uniformis ATCC 8492]
 gi|316904162|gb|EFV25992.1| MiaB-like tRNA modifying enzyme [Bacteroides sp. 4_1_36]
          Length = 438

 Score =  158 bits (399), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 114/390 (29%), Positives = 187/390 (47%), Gaps = 16/390 (4%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N  ++  +  +    G       + AD+ V+NTC + E A +K        R  
Sbjct: 16  TLGCKLNFSETSTIGKILREAGVRTARKGEKADICVVNTCSVTEVADKKC-------RQA 68

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
            +  +K+     VVV GC AQ + E + +    V+VV+G +    L   L      K   
Sbjct: 69  IHKLVKQHPGAFVVVTGCYAQLKPETVAKIEG-VDVVLGAEQKKDLLHYL--GNLQKHET 125

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
              Y+     + +       +R      FL +Q+GCD +C++C +P+ RG   + S++ +
Sbjct: 126 GEAYT--SALKDIRSFAPSCSRGDRTRFFLKVQDGCDYYCSYCTIPFARGRSRNGSIASM 183

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270
           V++A +    G  EI L G N+  + GK   GE  TF DL+ +L E++G+ R R ++  P
Sbjct: 184 VEQASQAAAEGGKEIVLTGVNIGDF-GKST-GE--TFFDLVKALDEVEGIERYRISSIEP 239

Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330
             ++D +I+        MP+ H+P+QSGSD +LK M RR+    +   I +I+ V PD  
Sbjct: 240 NLLTDEIIEYVSRSRRFMPHFHIPLQSGSDEVLKLMRRRYDTALFASKIKKIKEVMPDSF 299

Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER 390
           I  D IVG  GET++ F    + +  +   Q   F YS R GT    +   V    K  R
Sbjct: 300 IGVDVIVGTRGETEEYFGQAYEFIKSLDVTQLHVFSYSERPGTQALKIDHVVAPEEKHRR 359

Query: 391 LLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
              L +   E+  +F    +GQ + VL+E+
Sbjct: 360 SQQLLELSDEKTRAFYARHIGQTMPVLLER 389


>gi|328955426|ref|YP_004372759.1| RNA modification enzyme, MiaB family [Coriobacterium glomerans PW2]
 gi|328455750|gb|AEB06944.1| RNA modification enzyme, MiaB family [Coriobacterium glomerans PW2]
          Length = 444

 Score =  158 bits (399), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 106/362 (29%), Positives = 169/362 (46%), Gaps = 29/362 (8%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R  V + GC++N  +S R+E      G+  ++   +ADLI++NTC +  +A  K    + 
Sbjct: 10  RARVVNIGCRVNRVESDRIEAELARAGFA-LDETGEADLIIINTCAVTGEAEAKTRKAVR 68

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R      S         V+  GC        +   S    V+V P               
Sbjct: 69  RALVASPS-------ARVIATGCSVNLNASALAALSD--RVIVEP--------------V 105

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTA--FLTIQEGCDKFCTFCVVPYTRGIEI 203
            +RV                        RG  A   + +Q+GC++ C++C+V   RG E 
Sbjct: 106 KERVCARAAQAAAVLGAAPCAPSAVGSVRGTRARVGVKVQDGCNRRCSYCIVWRARGPER 165

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           S  ++ V    R+L   GV E+ L G N+ AW G G  G     +DLL ++     + R+
Sbjct: 166 SVPVAAVTGRVRELAAAGVAEVVLTGVNLGAWAGSGRAGGTADIADLLEAVLGETDIARV 225

Query: 264 RYTTSHPRDMSDCLIK--AHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R ++  P D+S  L+   AH    V  PYLHLP+QSG    L+ M R ++A ++ ++  R
Sbjct: 226 RLSSIEPMDVSGRLLAVMAHSSRRV-APYLHLPLQSGCSATLRRMGRPYSAQDFAELARR 284

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
            R     +A+S D I GFPGETD++F A+ +L  +IG+++   F+YS R GTP +    +
Sbjct: 285 SRRSIAGVALSCDIIAGFPGETDEEFEASFELCARIGFSRMHVFRYSARPGTPAAAASGR 344

Query: 382 VD 383
           ++
Sbjct: 345 IE 346


>gi|325953666|ref|YP_004237326.1| ribosomal protein S12 methylthiotransferase rimO [Weeksella virosa
           DSM 16922]
 gi|323436284|gb|ADX66748.1| Ribosomal protein S12 methylthiotransferase rimO [Weeksella virosa
           DSM 16922]
          Length = 434

 Score =  158 bits (399), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 131/453 (28%), Positives = 220/453 (48%), Gaps = 37/453 (8%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++  + + GC  NVYDS  +     +   E V+     D++V+NTC   + A E+  + +
Sbjct: 9   KKINIVTLGCSKNVYDSEVLMGQLQANKKEVVHE-GVGDIVVINTCGFIDNAKEESINTI 67

Query: 85  GRIRNLKNSRIKEGGDL-LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
                L+   +KE G++  V V GC+++    ++    P V+   G +    LP LL   
Sbjct: 68  -----LEYVDLKEQGEVEKVFVTGCLSERYKPDLEAEIPNVDQYFGTRD---LPLLL--- 116

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
               + +  DY  E   ERL+     Y       A+L I EGCD+ C+FC +P  RG  I
Sbjct: 117 ----KALGADYKHELVGERLTTTPRHY-------AYLKIAEGCDRPCSFCAIPLMRGGNI 165

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVR 262
           S+ + ++V EA+KL   G  E+ L+ Q++  +   GLD  ++   +DLL  L ++ G+  
Sbjct: 166 SKPIEELVIEAKKLAKKGTKELILIAQDLTYY---GLDLYKRRALADLLKELVKVDGVEW 222

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R   + P    + +++       +  YL +P+Q  S  ILKSM R  T  +   ++D+ 
Sbjct: 223 IRLHYAFPSGFPEDVLEVIKKEKKVCNYLDIPLQHISTDILKSMRRGTTKEKTNALLDKF 282

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R   PD+AI +  IVG+PGET++ F    + V +  + +   F YS    T    + + V
Sbjct: 283 RQYVPDMAIRTTLIVGYPGETEEHFNEMKEWVKEQRFDRLGCFTYSHEENTHAYLLEDDV 342

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSV 438
            + VK +R+  + +   +     N   +G+   VLI++  KE    VGR    SP + + 
Sbjct: 343 PQEVKEQRVEEIMEIQTQISYELNQEKIGKQFRVLIDR--KEGDNFVGRTEYDSPDVDNE 400

Query: 439 VLNSKNH---NIGDIIKVRITDVKISTLYGELV 468
           VL +      +IGD ++V I D     L G+LV
Sbjct: 401 VLINAEEVYLSIGDFVQVEIVDAYEFDLIGKLV 433


>gi|270295900|ref|ZP_06202100.1| MiaB-like tRNA modifying enzyme [Bacteroides sp. D20]
 gi|270273304|gb|EFA19166.1| MiaB-like tRNA modifying enzyme [Bacteroides sp. D20]
          Length = 438

 Score =  158 bits (399), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 114/390 (29%), Positives = 187/390 (47%), Gaps = 16/390 (4%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N  ++  +  +    G       + AD+ V+NTC + E A +K        R  
Sbjct: 16  TLGCKLNFSETSTIGKILREAGVRTARKGEKADICVVNTCSVTEVADKKC-------RQA 68

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
            +  +K+     VVV GC AQ + E + +    V+VV+G +    L   L      K   
Sbjct: 69  IHKLVKQHPGAFVVVTGCYAQLKPETVAKIEG-VDVVLGAEQKKDLLHYL--GNLQKHET 125

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
              Y+     + +       +R      FL +Q+GCD +C++C +P+ RG   + S++ +
Sbjct: 126 GEAYT--SALKDIRSFAPSCSRGDRTRFFLKVQDGCDYYCSYCTIPFARGRSRNGSIASM 183

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270
           V++A +    G  EI L G N+  + GK   GE  TF DL+ +L E++G+ R R ++  P
Sbjct: 184 VEQASQAAAEGGKEIVLTGVNIGDF-GKST-GE--TFFDLVKALDEVEGIERYRISSIEP 239

Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330
             ++D +I+        MP+ H+P+QSGSD +LK M RR+    +   I +I+ V PD  
Sbjct: 240 NLLTDEIIEYVSRSRRFMPHFHIPLQSGSDEVLKLMRRRYDTALFASKIKKIKEVMPDSF 299

Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER 390
           I  D IVG  GET++ F    + +  +   Q   F YS R GT    +   V    K  R
Sbjct: 300 IGVDVIVGTRGETEEYFGQAYEFIKSLDVTQLHVFSYSERPGTQALKIDHVVAPEEKHRR 359

Query: 391 LLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
              L +   E+  +F    +GQ + VL+E+
Sbjct: 360 SQQLLELSDEKTRAFYARHIGQTMPVLLER 389


>gi|255011267|ref|ZP_05283393.1| hypothetical protein Bfra3_19146 [Bacteroides fragilis 3_1_12]
 gi|313149079|ref|ZP_07811272.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313137846|gb|EFR55206.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 439

 Score =  158 bits (399), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 115/393 (29%), Positives = 190/393 (48%), Gaps = 22/393 (5%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N  ++  +  +    G       + ADL ++NTC + E A +K    + R+   
Sbjct: 16  TLGCKLNFSETSTIGKILREAGVRTARKGEKADLCIVNTCSVTEMADKKCRQAIHRL--- 72

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               +K+     VVV GC AQ +  ++ +    V+VV+G +    L + L      K   
Sbjct: 73  ----VKQHPGAFVVVTGCYAQLKPGDVAKIEG-VDVVLGAEQKKDLLQYL--GDLHKHEG 125

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
              Y+   K   +       +R      FL +Q+GCD FC++C +P+ RG   + +++ +
Sbjct: 126 GEAYTTATK--DIRSFAPSCSRGDRTRFFLKVQDGCDYFCSYCTIPFARGRSRNGTVASL 183

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270
           V++AR+    G  EI L G N+  + GK   GE  TF DL+ +L +++G+ R R ++  P
Sbjct: 184 VEQARQAAAEGGKEIVLTGVNIGDF-GKST-GE--TFFDLVKALDQVEGIERYRISSIEP 239

Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330
             ++D +I+        MP+ H+P+QSG D +L+ M RR+    +   I +I+ V PD  
Sbjct: 240 NLLTDEIIEYVSTSRSFMPHFHIPLQSGCDEVLQLMRRRYGTELFASKIAKIKEVMPDAF 299

Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK--- 387
           I  D IVG  GETD+ F    + +  +   Q   F YS R GT    +   V    K   
Sbjct: 300 IGVDVIVGTRGETDEYFEKAYEFISGLDITQLHVFSYSERPGTQALKIDHVVTPEAKHQR 359

Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
           ++RLL L      +   F    +GQ + VL+EK
Sbjct: 360 SQRLLALSDG---KTKDFYARHIGQTMPVLMEK 389


>gi|225620158|ref|YP_002721415.1| 2-methylthioadenine synthetase [Brachyspira hyodysenteriae WA1]
 gi|225214977|gb|ACN83711.1| MiaB, 2-methylthioadenine synthetase [Brachyspira hyodysenteriae
           WA1]
          Length = 440

 Score =  158 bits (399), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 117/416 (28%), Positives = 205/416 (49%), Gaps = 26/416 (6%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC-HIREKAAEKVYSF 83
           Q  ++ S GC+ N  D   +  +   +G+   N+ +DAD+IV+NTC  I +   E + + 
Sbjct: 2   QNIYLHSLGCEKNTVDGEHILAILQKKGFNITNNPEDADIIVINTCAFIEDSKKESIDAI 61

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
                  K  + K      ++V+GC+++   E  L     V+  +G      + + +E  
Sbjct: 62  FDHSMYKKYGKCKR-----LIVSGCMSERYKENFLEMFKEVDSAIGIYDLENILKAVEED 116

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            F     +T+Y  ++  +R+       N     + ++ I +GC   C+FC +P  RG   
Sbjct: 117 GFHDAKENTEY--KEYGDRV-------NTGTKYSVYIRISDGCHANCSFCAIPGIRGEHR 167

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVR 262
           SR +  +V EA     NG  EI L+ Q    +   G D  +K    DLL +LS+++G+  
Sbjct: 168 SRKIEDIVKEAENYAKNGAKEINLIAQETTFY---GYDIYKKLALPDLLKALSKVEGIEW 224

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE-YRQIIDR 321
           +R    +P  ++D +I++  + + ++PY  +P+Q     ILK MNR   +Y+ YR++ID+
Sbjct: 225 IRVLYQNPVVLNDEIIESFFNTEKVVPYFDIPLQHVDKDILKDMNRGTRSYKFYREMIDK 284

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           IRS   D  I +  IVGFPGET + F+  +  V      +   F YS    T    +L  
Sbjct: 285 IRSYNNDAVIRTSLIVGFPGETAESFKKLIKFVRNAKLDRVGVFTYSEEENTKA--LLIN 342

Query: 382 VDENVKAERLLCLQKKLREQ-QVSFN--DACVGQIIEVLIEKHGKEKGKLVGRSPW 434
             +  + ++L+  +K +R   +VS    +  +G+ I+VLIEK  ++  K +GRS +
Sbjct: 343 KPKMSRNKKLILREKLMRAAIEVSEKRLERFIGRTIDVLIEKK-EDDNKFIGRSIY 397


>gi|218886794|ref|YP_002436115.1| MiaB-like tRNA modifying enzyme YliG [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218757748|gb|ACL08647.1| MiaB-like tRNA modifying enzyme YliG [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 461

 Score =  158 bits (399), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 130/453 (28%), Positives = 205/453 (45%), Gaps = 32/453 (7%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC-HIREKAAEKVYSFLGRIRN 89
           S GC  N  D+ R+     +     V  M +AD++++NTC  I     E V + +  +  
Sbjct: 8   SLGCPKNRVDTERLLGALGAP-VRPVARMAEADVVLVNTCGFILPAVEESVRTVVEAVDE 66

Query: 90  LKNSRIKEGGDLLVVVAGCVAQAEGE-EILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
           +     +     L+ VAGC+    GE ++    P V++ +  Q+    P+LL RA   + 
Sbjct: 67  ISGLARRP----LLAVAGCLVGRYGERDLAAELPEVDLWLPNQSIETWPDLLARAVGARV 122

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVT-----AFLTIQEGCDKFCTFCVVPYTRGIEI 203
            +    +        ++  G     R ++     A+L I +GC   C+FC +P  RG   
Sbjct: 123 AMGGGLAGSGTLAPGAVAPGYAGGTRLLSTGPSYAWLKISDGCRHNCSFCTIPSIRGAHR 182

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-----RGKGLDGEKCTFSDLLYSLSEIK 258
           S   +++  EAR+L+D GV E+ L+ Q+V AW      G G    K     LL  L  + 
Sbjct: 183 STPAAELEREARQLLDMGVRELILVAQDVTAWGGDLENGPGGSAGKGDLRPLLDRLLPLP 242

Query: 259 GLVRLRYTTSHPRDMSD-CLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
           GL RLR    +P  ++D  L          +PY  +P+Q     +L  M R   A   R 
Sbjct: 243 GLDRLRLMYLYPAGLNDDLLAYLAAAGAPFVPYFDVPLQHAHPDVLGRMGRPF-ARNPRV 301

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
           ++DRIR   PD A+ +  IVGFPGET++ + A  D V +  +     F Y    GTP + 
Sbjct: 302 VVDRIRKHFPDAALRTSIIVGFPGETEEHYAALTDFVAETRFHHLGVFAYRAEEGTPAAA 361

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSPWLQ 436
           M  QVD+ VK  R   L +   E      ++CVGQ + VL++  H +  G   GR+ W Q
Sbjct: 362 MPGQVDDKVKEWRRDALMEVQAEISEEIMESCVGQRLPVLVDAPHDEWPGLHTGRT-WFQ 420

Query: 437 SVVLNSKNHNIG-----------DIIKVRITDV 458
           +  ++   +  G           DI++ R  D+
Sbjct: 421 APEIDGVTYVSGAGVIPGALVEADIVEARTYDL 453


>gi|90022971|ref|YP_528798.1| hypothetical protein Sde_3331 [Saccharophagus degradans 2-40]
 gi|123395607|sp|Q21FE3|RIMO_SACD2 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|89952571|gb|ABD82586.1| conserved hypothetical protein [Saccharophagus degradans 2-40]
          Length = 479

 Score =  158 bits (399), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 124/450 (27%), Positives = 211/450 (46%), Gaps = 55/450 (12%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC   + DS R+       GY+ V S +DAD++V+NTC   + A ++    +G     
Sbjct: 45  SLGCPKALVDSERILTQLKLDGYDVVPSYNDADVVVVNTCGFIDSAKQESLDAIGEA--- 101

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRS-PIVNVVVGPQTYYRLPELLERARFGKRV 149
               +KE G   V+V GC+ +    ++++ + P V  V GP  Y    E +  A  G   
Sbjct: 102 ----MKENGK--VIVTGCMGKGNDAQVIKETYPNVLSVTGPAAY----EEVMGAVHG--- 148

Query: 150 VDTDYSVEDKFERLSIVD----GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                 +  K E   ++D     G        A+L I EGC+  CTFC++P  RG  +SR
Sbjct: 149 -----YIPPKKEHNPLIDLVPPQGVKLTPRHYAYLKISEGCNHRCTFCIIPDMRGDLVSR 203

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYSL 254
            +  V+ EA +L+  G  EI ++ Q+ +A           W+G+ +   K    ++  +L
Sbjct: 204 PIGDVLGEAERLVAAGTKEILVISQDTSAYGVDVKYRTGFWQGRPV---KTRMLEMCEAL 260

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
            E+   VRL Y   +P   +   + A G +   +PYL +P Q  S ++LK+M R     +
Sbjct: 261 GELGAWVRLHYVYPYPHVDNVIPLMAEGKI---LPYLDIPFQHASPQVLKNMRRPAHQEK 317

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
             + + + R + P++ + S F+VGFPGET+ DF+  +D + +    +   F+YSP  G  
Sbjct: 318 TLERLAKWREMCPELVLRSTFVVGFPGETEQDFQILLDWLQEAQLDRVGCFEYSPVEGAK 377

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDA----CVGQIIEVLIEKHGKE--KGKL 428
            + +   V + VK ER     ++  E Q + + A     VG  ++V+I+    +   G+ 
Sbjct: 378 ANALPNHVPDEVKRERW----ERFMETQQAISAAKLKQKVGYEMDVIIDSIDGDIATGRT 433

Query: 429 VGRSPWLQSVVL--NSKNHNIGDIIKVRIT 456
              +P +  VV    +    +G+   V IT
Sbjct: 434 YADAPEIDGVVTFSGAAGMKVGEFSAVEIT 463


>gi|209878518|ref|XP_002140700.1| radical SAM domain-containing protein [Cryptosporidium muris RN66]
 gi|209556306|gb|EEA06351.1| radical SAM domain-containing protein [Cryptosporidium muris RN66]
          Length = 548

 Score =  158 bits (399), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 112/375 (29%), Positives = 188/375 (50%), Gaps = 45/375 (12%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R  ++++GC  N  DS  M  +    GYE VN +DD DLIV+N+C ++  +     + + 
Sbjct: 89  RIMMRNFGCNHNRSDSESMNGLLVEYGYEIVNELDDCDLIVINSCTVKSPSEMSCRNLVE 148

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIV-NV-VVGPQTYYRLPELLERA 143
              N K           VVV GC+ QAE     R  P + NV V+G    +R+ E++E  
Sbjct: 149 TALNKKK---------FVVVTGCIPQAE-----RTLPWLKNVSVLGVSYTHRIVEIVELT 194

Query: 144 RFGKRV----VDTDYSV------EDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCT 191
             G  V    +++D S       +DK  F RL  ++    RK  +   +T+  GC   CT
Sbjct: 195 LQGNIVEMISMNSDLSAIGTTKKQDKATFSRLPPLNLPKIRKNPLVEIITVSVGCLGNCT 254

Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLL 251
           +C   Y+RG   S ++  +++  +  +  G+ +I L  ++  A+ GK +       S L+
Sbjct: 255 YCKTKYSRGNLGSYTIETILNRVKTSLKEGIKQIWLTSEDTGAY-GKDIG---TNLSSLI 310

Query: 252 YSLSEIK--------GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
           Y +  I         G+    Y  +  +DM + L  +H ++     +LH+PVQSGS+++L
Sbjct: 311 YQILNIIPPDVMIRIGMTNPPYILNQIQDMVEVL--SHPNV---FEFLHIPVQSGSNKVL 365

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
            +M R +T  ++ +++D I S    I I++D I GFPGET++D + T++L+ K  +    
Sbjct: 366 TNMRRDYTREDFCKLVDEISSQLSLITIATDIICGFPGETEEDHQDTVELIKKYKFPVIN 425

Query: 364 SFKYSPRLGTPGSNM 378
             K+ PR GTP + M
Sbjct: 426 ISKFYPRPGTPAAKM 440


>gi|163869369|ref|YP_001610625.1| hypothetical protein Btr_2683 [Bartonella tribocorum CIP 105476]
 gi|161019072|emb|CAK02630.1| conserved hypothetical protein [Bartonella tribocorum CIP 105476]
          Length = 427

 Score =  157 bits (398), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 111/371 (29%), Positives = 181/371 (48%), Gaps = 31/371 (8%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           ++GC++N Y+S  +     S G +++   D A  I+ NTC +  +A  +    + + R  
Sbjct: 7   TFGCRLNSYESEIIRKESTSSGLDQLK--DGA--IIFNTCAVTAEAVRQAKQAIRKAR-- 60

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG------PQTYYRLPELLERAR 144
                +E     ++V GC AQ E +     +  V++V+G        +Y +LP+      
Sbjct: 61  -----RENPHARIIVTGCAAQTEAQNFASMTE-VDLVLGNEDKLHAHSYRQLPDFGINHS 114

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
              R+ D    +E +     +V     R R   AF+ +Q GCD  CTFC++PY RG   S
Sbjct: 115 EKVRINDI---MEVQKIAPHMVSAMQERTR---AFVQVQNGCDHRCTFCIIPYGRGPSRS 168

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS-LSEIKGLVRL 263
             +  V+++ RKL   G+ E+ L G ++ ++ G  L G K T   L  + L  +  L RL
Sbjct: 169 VPMGAVIEQIRKLTGEGIQEVVLTGVDLTSY-GHDLPG-KATLGKLTSAILHHVPDLARL 226

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R ++    +  + LI        +MP+LHL +Q+G + ILK M RRH      Q    +R
Sbjct: 227 RLSSIDSIEADEELINLLAYEKRIMPHLHLSLQAGDNMILKRMKRRHLREHAIQFCQELR 286

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           + RP +   +D I GFP ET++ F+ ++ L+          F +SPR GTP + M  QV+
Sbjct: 287 AKRPTMVYGADLIAGFPTETEEMFQNSLALIKDCHLTHLHVFPFSPREGTPAARM-PQVN 345

Query: 384 ENV---KAERL 391
             +   +AERL
Sbjct: 346 RKIVKMRAERL 356


>gi|298383745|ref|ZP_06993306.1| 2-methylthioadenine synthetase [Bacteroides sp. 1_1_14]
 gi|298263349|gb|EFI06212.1| 2-methylthioadenine synthetase [Bacteroides sp. 1_1_14]
          Length = 443

 Score =  157 bits (398), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 114/396 (28%), Positives = 196/396 (49%), Gaps = 28/396 (7%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N  ++  +  +    G       + AD+ V+NTC + E A +K    + R+   
Sbjct: 16  TLGCKLNFSETSTIGKILREAGVRTARKGEKADICVVNTCSVTEMADKKCRQAIHRL--- 72

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL---ERARFGK 147
               +K+     VVV GC AQ +  ++ +    V+VV+G +    L + L    +   G+
Sbjct: 73  ----VKQHPGAFVVVTGCYAQLKPGDVAKIKG-VDVVLGAEQKGDLLQYLGDLHKHEEGE 127

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
               T   +       S  D    R R    FL +Q+GCD FC++C +P+ RG   + ++
Sbjct: 128 AFTTTTKDIRSFSPSCSRGD----RTR---FFLKVQDGCDYFCSYCTIPFARGRSRNGTV 180

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
           + +V++AR+    G  EI L G N+  + GK   GE  TF DL+ +L +++G+ R R ++
Sbjct: 181 ASMVEQARQAAAEGGKEIVLTGVNIGDF-GK-TTGE--TFFDLVKALDQVEGIERYRISS 236

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
             P  ++D +I+        MP+ H+P+QSG D +LK M RR+    +   + +I+ V P
Sbjct: 237 IEPNLLTDEIIEFVSRSRRFMPHFHIPLQSGCDEVLKLMRRRYDTALFASKVKKIKEVMP 296

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM---LEQVDE 384
           D  +  D IVG  GET++ F      +  +   Q   F YS R GT    +   +   ++
Sbjct: 297 DAFVGVDVIVGTRGETEEYFEQAYQFISGLDVTQLHVFSYSERPGTQALKIDYVVSPEEK 356

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
           + +++RLL L     E+   F    +GQ ++VL+EK
Sbjct: 357 HQRSQRLLTLSD---EKTRVFYTRHIGQTMQVLMEK 389


>gi|297839059|ref|XP_002887411.1| radical SAM domain-containing protein [Arabidopsis lyrata subsp.
           lyrata]
 gi|297333252|gb|EFH63670.1| radical SAM domain-containing protein [Arabidopsis lyrata subsp.
           lyrata]
          Length = 602

 Score =  157 bits (398), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 127/452 (28%), Positives = 214/452 (47%), Gaps = 36/452 (7%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           Q  ++K++GC  N  DS  M     + GY      +DADL ++NTC ++  +   + + +
Sbjct: 64  QTIYIKTFGCSHNQSDSEYMAGQLTAFGYALTEVPEDADLWLINTCTVKSPSQSAMSTLI 123

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R R+         G   +V+AGCV Q  G   L+    V+VV G Q   R+ E++E   
Sbjct: 124 TRGRS---------GKKPLVIAGCVPQ--GSRDLKELEGVSVV-GVQQIDRVVEIVEETL 171

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G  V           + L  +D    R+      L I  GC   CT+C   + RG   S
Sbjct: 172 KGHEVRLLTR------KTLPALDLPKVRRNNFIEILPINVGCLGACTYCKTKHARGHLGS 225

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAW-RGKGLDGEKCTFSDLLYSLSEIKGL--- 260
            ++  +V+  R +I  GV EI L  ++  A+ R  G++        LL ++  +K L   
Sbjct: 226 YTVDSLVERVRTVISEGVKEIWLSSEDTGAYGRDIGVN-----LPILLNAI--VKELPSD 278

Query: 261 --VRLRYTTSHPRDMSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
               LR   ++P  + + L +    L    +  +LH+PVQSGSD +L +MNR +TA E+R
Sbjct: 279 QSTMLRIGMTNPPFILEHLKEIAAVLRHPCVYTFLHVPVQSGSDSVLTAMNREYTASEFR 338

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
            ++D +  + P + I++D I GFPGETD+DF  T++L+    ++Q    ++ PR GTP +
Sbjct: 339 TVVDTLTELVPGMQIATDIICGFPGETDEDFSQTVELIKDYKFSQVHISQFYPRPGTPAA 398

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQ 436
            M ++V   +  +R   L      +  +      G+   + I +   +   LVG +    
Sbjct: 399 KM-KKVQSKIVKQRSRDLTSVF--EAFAPYTGMEGREERIWITEIATDGIHLVGHTKGYV 455

Query: 437 SVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            V++      +G     RIT V   +++GE++
Sbjct: 456 QVLVTGPESMLGTSAMARITSVGRWSVFGEVI 487


>gi|149278722|ref|ZP_01884858.1| 2-methylthioadenine synthetase [Pedobacter sp. BAL39]
 gi|149230717|gb|EDM36100.1| 2-methylthioadenine synthetase [Pedobacter sp. BAL39]
          Length = 444

 Score =  157 bits (398), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 131/459 (28%), Positives = 217/459 (47%), Gaps = 53/459 (11%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD---------DADLIVLNTCHIREKAAEK 79
           V + GC  N+YDS  +       G  R NSMD           D++V+NTC   + A ++
Sbjct: 19  VITLGCSKNLYDSEVL------MGQLRGNSMDVVHEADKMGKDDIVVINTCGFIDNAKQE 72

Query: 80  VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL 139
               + +   LK+    EG    V+V GC+++    E+      V+   G      +   
Sbjct: 73  SIDTILQYSQLKD----EGKVGKVIVTGCLSERYKPELESEITNVDAFFGTNDLNNILHS 128

Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           L            +Y  E   ERL      +       A+  I EGC++ C+FC +P  R
Sbjct: 129 L----------GANYKHELIGERLLTTPSHF-------AYFKIAEGCNRPCSFCAIPLMR 171

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIK 258
           G  +SR + ++V+EA+ L  NG  E+ L+ Q++  +   GLD   K    +LL  LS++ 
Sbjct: 172 GKHVSRDMQELVNEAKILAANGTKELILIAQDLTYY---GLDIYGKRNLDELLRRLSDVN 228

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           G+  +R   ++P      ++ A  + D +  YL +P+Q  +D +LKSM R  T  +   I
Sbjct: 229 GIEWIRLQYAYPSGFPMEILDAMNERDNICKYLDMPLQHITDNMLKSMRRGITKQKTIDI 288

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           +++IR   P+IA+ +  I G+PGET+ DF   +  V+   + +   F YS    T   N+
Sbjct: 289 VNQIRDKVPNIAMRTTLICGYPGETEQDFEEMLSWVEDTRFDRLGCFTYSHEEKTHAHNL 348

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSF--NDACVGQIIEVLIEKHGKEKGKLVGR----S 432
           ++ V + VK ER+  + +   +Q +SF  N   VG+  +VL+++  KE    +GR    S
Sbjct: 349 VDDVPDEVKQERVDAIME--LQQGISFDINQEKVGKTYKVLVDR--KEGDFFIGRTEFDS 404

Query: 433 PWLQSVVLNSKNHNI---GDIIKVRITDVKISTLYGELV 468
           P + + VL          G  + VRI   +   LYG++V
Sbjct: 405 PEVDNEVLIDAATGYAANGSFVNVRIDRAEDFDLYGQIV 443


>gi|218530899|ref|YP_002421715.1| MiaB-like tRNA modifying enzyme [Methylobacterium chloromethanicum
           CM4]
 gi|218523202|gb|ACK83787.1| MiaB-like tRNA modifying enzyme [Methylobacterium chloromethanicum
           CM4]
          Length = 410

 Score =  157 bits (398), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 109/353 (30%), Positives = 176/353 (49%), Gaps = 34/353 (9%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           ++GC++N  +S  +      +G+   NS +  DL+V+NTC +  +A  +    + R+   
Sbjct: 7   TFGCRLNTVESEVL------RGHAEPNS-EGRDLVVVNTCAVTAEAGLQARKAIRRL--- 56

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRS----PIVNVVVGPQTYYRLPELLERARFG 146
             SR + G +  +VV GC     G E+ R S    P V  +VG     R        + G
Sbjct: 57  --SRERPGAE--IVVTGC-----GAEVERASYAAMPEVARLVGNAAKLRPASW----QSG 103

Query: 147 KRVVDTDYSVEDKFERLSIVD-GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                 D       E   I    G+ R     AF+ +Q GCD  CTFCV+P+ RG   S 
Sbjct: 104 TAPAPEDIMAVRTAEPTHITTMSGHTR-----AFVPVQNGCDHRCTFCVIPFGRGNSRSV 158

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            +++ V + R+++++G  E+ L G ++ A+ G+ LD +      +   L+E+  L RLR 
Sbjct: 159 PVAEAVAQVRRIVEHGGREVVLTGVDLTAY-GRDLDSDLSLGRLVRTILAEVPDLARLRL 217

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
           ++    +    LI A  +   LMP++HL +Q+G D ILK M RRH+  +  ++ + +R +
Sbjct: 218 SSIDSVEADADLIAAFAEEPRLMPHVHLSLQAGDDLILKRMKRRHSRADAIRLCETLRDL 277

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           RP +   +D I GFP ET+  F  ++DLV + G      F YSPR  TP + M
Sbjct: 278 RPGLVFGADLIAGFPTETEAQFARSLDLVVECGLTHLHVFPYSPRPDTPAARM 330


>gi|296109521|ref|YP_003616470.1| RNA modification enzyme, MiaB family [Methanocaldococcus infernus
           ME]
 gi|295434335|gb|ADG13506.1| RNA modification enzyme, MiaB family [Methanocaldococcus infernus
           ME]
          Length = 411

 Score =  157 bits (398), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 124/442 (28%), Positives = 215/442 (48%), Gaps = 38/442 (8%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + +V+ YGC +N  D+  +++    +G+E   S+D+A+++++NTC +R +   K+   + 
Sbjct: 2   KVYVEGYGCVLNKADTEIIKESLIKEGFEITESLDEANIVIINTCVVRLETENKMMHRIN 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            + +L           LV+VAGC+ +A  E++     I      P+  +R  E+L     
Sbjct: 62  YLNSLGK---------LVIVAGCLPKALKEKVEGFYHIY-----PKEAHRAGEIL----- 102

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
             + + T    ED+ E   +       K  +   L I EGC   C++C+V   RG  IS 
Sbjct: 103 --KDILTKKKKEDRGEEKELYKKLNYLKPKLVTPLPISEGCLGNCSYCIVKIARGKLISY 160

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLR 264
               +V +A +L+  G   + +  Q+   +   GLD G+    ++LL  L +I+G   +R
Sbjct: 161 PREFLVRKAEELVKGGAKCLLITAQDTACY---GLDRGD--NLANLLKDLCQIEGEFIMR 215

Query: 265 YTTSHPRDMS---DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
               H + +S   D +I+ + + + +  +LHLP+QSG D ILK M R ++  E+  I+  
Sbjct: 216 VGMMHAKYLSPILDEIIELYREEEKIGKFLHLPLQSGDDEILKLMGRGYSVDEFISIVKE 275

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
            +    D+  ++D IVGFPGET++ F  T++++ K+        KY+ R GT  + M +Q
Sbjct: 276 FKRKVKDLCFTTDVIVGFPGETEEAFNNTLEVLRKLKPDYIHGAKYTQRKGTEAARM-KQ 334

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           +D  ++  R   L K  RE     N   VG+ +  LI +  K      G +   + VV  
Sbjct: 335 LDTKIRKRRTEILDKLRRELSYLNNKKYVGREMRTLIIEKNK------GYTENFK-VVRF 387

Query: 442 SKNHNIGDIIKVRITDVKISTL 463
            K   +G   KV+I D    TL
Sbjct: 388 EKEQEVGKFKKVKIKDATTFTL 409


>gi|46203010|ref|ZP_00052227.2| COG0621: 2-methylthioadenine synthetase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 410

 Score =  157 bits (398), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 130/431 (30%), Positives = 208/431 (48%), Gaps = 42/431 (9%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           ++GC++N  +S  +     +   ER       DL+V+NTC +  +A  +    + R+   
Sbjct: 7   TFGCRLNTVESEVLRGHAEADARER-------DLVVVNTCAVTAEAGRQARKAIRRL--- 56

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
             +R + G +  +VV GC A+ E        P V  +VG     + PE    A       
Sbjct: 57  --ARERPGAE--IVVTGCGAEVE-RGAYAAMPEVARLVGNAVKLK-PESWRGA------- 103

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVT----AFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
               SV +  + +++      R  G++    AF+ +Q GCD  CTFCV+P+ RG   S  
Sbjct: 104 ----SVPEAADIMAVRAAEPTRIAGMSGHTRAFVPVQNGCDHRCTFCVIPFGRGNSRSVP 159

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS-LSEIKGLVRLRY 265
           ++  V + R+++++G  E+ L G ++ A+ G+ LD E  T   L+ + L E+  L RLR 
Sbjct: 160 VADAVAQVRRIVEHGGREVVLTGVDLTAY-GRDLDAE-LTLGRLVRTILGEVPDLARLRL 217

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
           ++    +    LI A  +   LMP++HL +Q+G D ILK M RRH+  +  +I   +R +
Sbjct: 218 SSIDSVEADAALIAAFAEEPRLMPHVHLSLQAGDDLILKRMKRRHSRADAIRICRTLRDL 277

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
           RP +   +D I GFP ET+  F  ++DLV + G      F YSPR GTP + M   V  +
Sbjct: 278 RPGLVFGADLIAGFPTETEAQFARSLDLVAECGLTHLHVFPYSPRPGTPAARM-PAVPGD 336

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445
           +  ER   L++          D  VG    VL E+         GR+    S+V  S+  
Sbjct: 337 IVRERAARLREAGTAALTRHLDGEVGARRRVLTERGD------TGRTEAF-SLVRFSEPV 389

Query: 446 NIGDIIKVRIT 456
             G+I +V IT
Sbjct: 390 PAGEIREVAIT 400


>gi|307565341|ref|ZP_07627834.1| ribosomal protein S12 methylthiotransferase RimO [Prevotella amnii
           CRIS 21A-A]
 gi|307346010|gb|EFN91354.1| ribosomal protein S12 methylthiotransferase RimO [Prevotella amnii
           CRIS 21A-A]
          Length = 432

 Score =  157 bits (398), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 133/457 (29%), Positives = 206/457 (45%), Gaps = 55/457 (12%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEK----VYSFL 84
           + GC  N+ DS  +   F + G++  +  D  D ++ V+NTC   E A E+    +  F+
Sbjct: 10  TMGCSKNLVDSELLMKQFEANGFKCTHDSDKPDGEIAVINTCGFIETAKEESINTILEFV 69

Query: 85  GRIRNLKNSRIKEGGDL-LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
            R         KE G L  + V GC++Q   EE+ +  P V+   G   Y +L   L +A
Sbjct: 70  NR---------KEKGQLNKLFVMGCLSQRYKEELKKEIPEVDKFYGKFNYKQLLTDLGKA 120

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT-----AFLTIQEGCDKFCTFCVVPYT 198
                                      N  R +T     A++ I EGCD+ C +C +P  
Sbjct: 121 SV----------------------ASCNGVRHLTTPRHYAYIKIAEGCDRHCAYCAIPLI 158

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258
            G   SR +  V+ E  +L+  GV E  ++ Q +  + G  +DG K   SDL+  +++IK
Sbjct: 159 TGKHQSRKMEDVLQEVEQLVKEGVKEFQIIEQEL-TYYGVDIDG-KHHISDLISKIADIK 216

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           G+  +R   ++P      L+    D   +  YL +  Q  SD +L  M+R  +  E   +
Sbjct: 217 GVEWIRLHYAYPNQFPLSLLDVIADKPNVCKYLDIAFQHISDNMLNRMHRHVSKQETLSL 276

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           I  IRS  P+I + +  +VGFPGETD+DF    D V +  + +  +F YS   GT  +  
Sbjct: 277 IKEIRSRVPNIHLRTTLLVGFPGETDEDFEELKDFVRQARFERMGAFSYSREEGTYSAEH 336

Query: 379 LE-QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SP 433
            E  V E VK +RL  L    ++       A VG   +V+I++  KE    VGR    SP
Sbjct: 337 YEDDVPEEVKMQRLNELMAIQQDISTEIERAKVGHTFKVIIDR--KEGDYYVGRTEFCSP 394

Query: 434 WLQSVVLNSKNHN---IGDIIKVRITDVKISTLYGEL 467
            +   VL     +   +G+   V IT      LYGE+
Sbjct: 395 EVDPEVLIPMKEDTLRVGEFYNVYITSSDEFDLYGEI 431


>gi|75676959|ref|YP_319380.1| 2-methylthioadenine synthetase [Nitrobacter winogradskyi Nb-255]
 gi|74421829|gb|ABA06028.1| 2-methylthioadenine synthetase [Nitrobacter winogradskyi Nb-255]
          Length = 422

 Score =  157 bits (398), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 114/371 (30%), Positives = 174/371 (46%), Gaps = 34/371 (9%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V ++GC++N ++S  +     + G E        D++++N+C +  +A  +       IR
Sbjct: 5   VITFGCRLNAFESEVIRRNAEAAGLE--------DVVIVNSCAVTNEAVAQARQ---SIR 53

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR------------L 136
            LK +R     D  +VV GC AQ E   +  +   V+ V+G     R             
Sbjct: 54  RLKRAR----PDARIVVTGCAAQIE-PAMFAQMAEVDRVIGNDEKMRGEAWRAARAAFAA 108

Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
           P++   A     V D     E     +    GG  R     AF+ +Q GCD  CTFC++P
Sbjct: 109 PDVTIAAEKKIAVADIMAVTEMAPHLVDGFQGGLPR-----AFVQVQNGCDHRCTFCIIP 163

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256
           + RG   S  +  VVD+ R L + G  EI L G ++ ++ G  L G       +   L +
Sbjct: 164 FGRGNSRSMPMDAVVDQVRVLTETGYAEIVLTGVDLTSY-GADLPGGPRLGGLVRQILRQ 222

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           +  + RLR ++    ++   L+ A  + + LMP+LHL +QSG D ILK M RRH   +  
Sbjct: 223 VPEMRRLRISSIDSIEVDRDLMDAIANEERLMPHLHLSLQSGDDMILKRMKRRHARRDAI 282

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
               ++R +RPD A  +D I GFP ETDD F  ++DLV +        F YS R GTP +
Sbjct: 283 DFCAQVRRLRPDTAFGADIIAGFPTETDDMFARSLDLVAECDLTFLHVFPYSSRPGTPAA 342

Query: 377 NMLEQVDENVK 387
            M     E V+
Sbjct: 343 RMPPVAAEVVR 353


>gi|188996614|ref|YP_001930865.1| MiaB-like tRNA modifying enzyme YliG [Sulfurihydrogenibium sp.
           YO3AOP1]
 gi|238066611|sp|B2V8N8|RIMO_SULSY RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|188931681|gb|ACD66311.1| MiaB-like tRNA modifying enzyme YliG [Sulfurihydrogenibium sp.
           YO3AOP1]
          Length = 430

 Score =  157 bits (398), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 122/449 (27%), Positives = 217/449 (48%), Gaps = 60/449 (13%)

Query: 31  SYGCQMNVYDS------LRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           S GC  N+ D+      L  E++ F+   E      +AD+I++NTC   E A E+    +
Sbjct: 10  SLGCPKNLVDTEVLIGKLNQENISFTANPE------EADVILINTCGFIEPAKEESIETI 63

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL--LER 142
                L+  ++K+  +  ++V GC+ +   +E+ +  P V+  +  +   ++P L  ++ 
Sbjct: 64  -----LEAVKLKQNSNKKIIVTGCLVERYKQELEKEIPEVDYFIDLKNQSQIPVLFDIKP 118

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
               KR++ T                        TA+L I EGCD  C+FC +P  RG  
Sbjct: 119 KENTKRIISTPKH---------------------TAYLKISEGCDHTCSFCAIPNIRGKH 157

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            S+ +  +V+EA+ L + GV E+ ++ Q+  ++ G  L G+   F +LL  L +I G+  
Sbjct: 158 RSKPIEALVEEAKYLANLGVKELNIVSQDT-SYYGYDLYGKPMLF-ELLQHLEKIDGIKW 215

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R    +P  + +   K     + ++ Y+ +P+Q   D+ILK M R +   +  QI++  
Sbjct: 216 IRLYYLYPSTVDEDFFKFIKGSEKILHYIEMPIQHSEDKILKDMMRGYRKKKLYQILEWK 275

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG-SNMLEQ 381
               PD+ I S  IVG+P ET++DF    + + +  +     F YS   GTP      ++
Sbjct: 276 EKYTPDMTIRSSVIVGYPTETEEDFENMKNFIQEAQFDWLGVFVYSHEEGTPAYQKHKDK 335

Query: 382 VDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL-VGRSPWLQS 437
           + +  K  RL     LQ+ + EQ+   N + +G+ ++++I+   +E   L +GRS   +S
Sbjct: 336 IPKKEKIRRLNEISALQENITEQK---NKSLIGKELDIIIDGFSEEWETLPIGRS--YRS 390

Query: 438 V--------VLNSKNHNIGDIIKVRITDV 458
                    V  ++  N+GDIIKVRI D 
Sbjct: 391 AFEIDGAVYVETTEPVNVGDIIKVRIKDT 419


>gi|189462612|ref|ZP_03011397.1| hypothetical protein BACCOP_03304 [Bacteroides coprocola DSM 17136]
 gi|189430773|gb|EDU99757.1| hypothetical protein BACCOP_03304 [Bacteroides coprocola DSM 17136]
          Length = 438

 Score =  157 bits (398), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 125/433 (28%), Positives = 207/433 (47%), Gaps = 29/433 (6%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N  ++  +  M    G   V   + AD+ V+NTC + E A +K    + R+   
Sbjct: 16  TLGCKLNFAETSTIGKMLKEVGVRTVRKGEQADICVINTCSVTEMADKKCRQAIHRL--- 72

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL---ERARFGK 147
                KE     +VV GC AQ +  ++      V++V+G +    L + L   E+   G+
Sbjct: 73  ----AKEHPGAFIVVTGCYAQLKPGQVADIEG-VDLVLGAEQKGDLMKYLGNLEKHEHGE 127

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
            +      +       S  D    R R    FL +Q+GCD FC++C +P+ RG   +  +
Sbjct: 128 AITTATKDIRTFVPSCSRGD----RTR---YFLKVQDGCDYFCSYCTIPFARGRSRNGKI 180

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
           + +V++AR++   G  EI L G N+  + GK   GE  +F DL+ +L  ++G+ R R ++
Sbjct: 181 ADLVEQARQVAAEGGKEIVLTGVNIGDF-GK-TTGE--SFFDLVKALDAVEGIERYRISS 236

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
             P  ++D +I+        MP+ H+P+QSG D +LK M RR+    +   I +I+ + P
Sbjct: 237 IEPNLLTDEIIEYVARSRRFMPHFHIPLQSGCDEVLKLMRRRYDTALFASKIHKIKFLMP 296

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM---LEQVDE 384
           D  I  D IVG  GET + F    + +  +   Q   F YS R GT    +   +   D+
Sbjct: 297 DAFIGVDVIVGTRGETPEYFEQAYEFIQGLDVTQLHVFSYSERPGTQALKIDYVVSPDDK 356

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
             +++RLL L     E+  SF    +GQ   VL+E H K    + G +     V L   +
Sbjct: 357 YQRSQRLLVLSD---EKTRSFYARHIGQEATVLME-HSKPGCPMHGFTDNYIRVELEQND 412

Query: 445 HNIGDIIKVRITD 457
                +I+VR+ D
Sbjct: 413 ALDNQLIRVRLGD 425


>gi|240139472|ref|YP_002963947.1| MiaB-like tRNA modifying enzyme, putative 2-methylthioadenine
           synthetase [Methylobacterium extorquens AM1]
 gi|240009444|gb|ACS40670.1| MiaB-like tRNA modifying enzyme, putative 2-methylthioadenine
           synthetase [Methylobacterium extorquens AM1]
          Length = 410

 Score =  157 bits (398), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 129/435 (29%), Positives = 207/435 (47%), Gaps = 50/435 (11%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           ++GC++N  +S  +      +G+   ++ +  DL+V+NTC +  +A  +    + R+   
Sbjct: 7   TFGCRLNTVESEVL------RGHAEPDA-EGRDLVVVNTCAVTAEAGRQARKAIRRL--- 56

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRS----PIVNVVVGPQTYYRLPELLERARFG 146
             SR + G +  +VV GC     G E+ R S    P V  +VG     R PE  +    G
Sbjct: 57  --SRERPGAE--IVVTGC-----GAEVERASYAAMPEVARLVGNAAKLR-PESWQS---G 103

Query: 147 KRVVDTDYSVEDKFERLSIVD-GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                 D       E   I    G+ R     AF+ +Q GCD  CTFCV+P+ RG   S 
Sbjct: 104 TAPAPEDIMAVRTAEPTHITTMSGHTR-----AFVPVQNGCDHRCTFCVIPFGRGNSRSV 158

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            +++ V + R+++++G  E+ L G ++ A+ G+ LD +      +   L+++  L RLR 
Sbjct: 159 PVAEAVAQVRRIVEHGGREVVLTGVDLTAY-GRDLDSDLSLGRLVRTILAKVPDLARLRL 217

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
           ++    +    LI A  +   LMP++HL +Q+G D ILK M RRH+  +  ++   +R +
Sbjct: 218 SSIDSVEADAELIAAFAEEPRLMPHVHLSLQAGDDLILKRMKRRHSRADAIRLCQTLRDL 277

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
           RP +   +D I GFP ET+  F  ++DLV + G      F YSPR  TP + M     + 
Sbjct: 278 RPGLVFGADLIAGFPTETEAQFARSLDLVAECGLTHLHVFPYSPRPDTPAARMPAVPGDV 337

Query: 386 VKAERLLCLQKKLREQQVS----FNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           V+A        +LRE   +      D  VG    VL E+         GR+    S+V  
Sbjct: 338 VRAR-----AARLRETGAAALARHLDGEVGARRRVLTERGD------TGRTEAF-SLVRF 385

Query: 442 SKNHNIGDIIKVRIT 456
           S+    GDI  V +T
Sbjct: 386 SEPVPAGDIRDVTVT 400


>gi|254521337|ref|ZP_05133392.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Stenotrophomonas
           sp. SKA14]
 gi|219718928|gb|EED37453.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Stenotrophomonas
           sp. SKA14]
          Length = 409

 Score =  157 bits (397), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 121/423 (28%), Positives = 200/423 (47%), Gaps = 49/423 (11%)

Query: 64  LIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPI 123
           ++V+NTC   + A  +    +G   N +N +        V+V GC+ +   E+I    P 
Sbjct: 1   MVVVNTCGFIDSAVTESLDAIGEAMN-QNGK--------VIVTGCLGK-RPEQIREAYPN 50

Query: 124 VNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQ 183
           V  V GPQ Y  + E +  A   K          D F  L + D G        A+L I 
Sbjct: 51  VLAVSGPQDYQSVMEAVHEALPPKH---------DPFVDL-VPDYGIKLTPRHYAYLKIS 100

Query: 184 EGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA--------- 234
           EGC+  C+FC++P  RG  +SR + +V+ EA +L+  GV E+ ++ Q+ +A         
Sbjct: 101 EGCNHKCSFCIIPSMRGKLVSRPVDEVLREAERLVRGGVRELLVVSQDTSAYGVDVKYAE 160

Query: 235 --WRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLH 292
             WR K     +    +L   LSE+   VR+ Y   +P    D ++    + + ++PYL 
Sbjct: 161 KMWRDKAY---QTRLKELCEGLSELDAWVRMHYVYPYPH--VDEVVPLMAE-NRILPYLD 214

Query: 293 LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352
           +P Q  S RIL+ M R     +  + +   R + PDI + S FIVGFPGET+ +F   + 
Sbjct: 215 IPFQHASPRILRLMKRPGAVEKTLERVQNWRRIAPDITVRSTFIVGFPGETEAEFEELLS 274

Query: 353 LVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQ 412
            +D+    +  +F YSP  G   +++ + V E VK ERL    +K  +   +  +A +G 
Sbjct: 275 FLDEAQLDRVGAFAYSPVEGATANDLPDAVPEEVKQERLARFMEKQAQISAARLEAKIGT 334

Query: 413 IIEVLIEKHGKEKGKLVGRS----PWLQSVVLNSKNHN-----IGDIIKVRITDVKISTL 463
           + + L++    E    V RS    P +  +V + +N +     +G+ + V IT+     L
Sbjct: 335 VQQCLVD--AIEGDIAVARSKADAPEIDGLV-HIQNADQVPLRVGEFVDVEITESDEHDL 391

Query: 464 YGE 466
           YG+
Sbjct: 392 YGD 394


>gi|260654222|ref|ZP_05859712.1| RNA modification enzyme, MiaB-family [Jonquetella anthropi E3_33
           E1]
 gi|260630855|gb|EEX49049.1| RNA modification enzyme, MiaB-family [Jonquetella anthropi E3_33
           E1]
          Length = 431

 Score =  157 bits (397), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 124/450 (27%), Positives = 208/450 (46%), Gaps = 44/450 (9%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC  N  DS R+  +    G+   +  +  DLI+LNTC   + A E+  S +     L
Sbjct: 8   TLGCPKNEADSERLAGIMARAGFSLTDKSEGVDLILLNTCGFIQPAVEEGISTM-----L 62

Query: 91  KNSRIKEGGDL-LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149
               +K  GD+  + V GC+    G+++ +  P V+     + +  L E +     G   
Sbjct: 63  DMETMKARGDVKALAVVGCMVNRYGDDLKKEFPTVDYWARSEQWQELIESMGATYLG--- 119

Query: 150 VDTDYSVEDKFERLSIVDGGYNRKR-GVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
                            DG +   R   T +L I EGC+  C++C +P  RG   SR + 
Sbjct: 120 -----------------DGRHILTRTPWTRYLKISEGCNCQCSYCAIPGIRGRLCSRPID 162

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSE-IKGLVRLRYT 266
           ++V EA +L+  G  E+ L+GQ +  +   G D  +K +   LL  L + +   V LR  
Sbjct: 163 ELVQEAGRLVSEGAKELCLVGQELTEY---GADLYKKRSLPKLLTELEKTLPQSVWLRLF 219

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
             HP  +   L++       ++P+L +P+Q   +++L+ M R     + R +    R + 
Sbjct: 220 YLHPSHLDTALLEQIASSKQIVPWLDVPIQHIDNQVLERMARPPVETKIRSLFKIAREIN 279

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           PD A  +  +VGFPGET   F   +D V+ I + +  +F YSP  GT  ++  +Q+ E+ 
Sbjct: 280 PDFAFRTTLMVGFPGETRRQFDRLLDFVEDIQFDRLGAFTYSPEDGTKAASFPDQIPEDE 339

Query: 387 KAER---LLCLQKKL-REQQVSFNDACVGQIIEVLIE---KHGKEKGKLVGRSPWLQ-SV 438
           K  R   L+ LQ+ + R +Q  F    VG+ ++VL+E   + G   G+    +P +  +V
Sbjct: 340 KGRRYDELMSLQQSISRRRQALF----VGRRLDVLVEEVDQDGTRWGRSYRDAPEIDGAV 395

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            L+      GDI+   I D     L+G  V
Sbjct: 396 ALSGSASQPGDIVSALIDDSSEYDLFGRPV 425


>gi|314918239|gb|EFS82070.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes
           HL050PA1]
          Length = 474

 Score =  157 bits (397), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 133/465 (28%), Positives = 209/465 (44%), Gaps = 56/465 (12%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N  DS  +     + G+  V+   +A+ +V+NTC   E+A +     L    +L
Sbjct: 7   SMGCARNDVDSEELAARMEAGGFRLVDDPAEAETVVVNTCGFIEQAKKDSVDTLLAAADL 66

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYY----RLPELLERARF- 145
           K + I       VV  GC+A+  G E+    P  + V+G   Y     RL  +L+     
Sbjct: 67  KGNGITTS----VVAVGCMAERYGRELAESLPEADAVLGFDDYGDIAGRLRTILDGGSLE 122

Query: 146 -----GKRVVDTDYSVEDKFERLSIVDGGY------------------NRKR---GVTAF 179
                 +R +     V+    R  +   G+                   R+R   G +A 
Sbjct: 123 THVPRDRRTLLPISPVDRPTARAEVSVPGHGTAPDLSASVTPDSGPRATRRRLGTGPSAP 182

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
           L +  GCD+ C FC +P+ RG  +SR ++++V+EAR L+D+GV E+ L+ +N +++ GK 
Sbjct: 183 LKMASGCDRRCAFCAIPHFRGSYLSRPIAEIVEEARWLVDHGVKEVFLVSENSSSY-GKD 241

Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
           L G+      LL +L ++ GL  +R +   P ++   LI      D ++PY  L  Q  S
Sbjct: 242 L-GDLRLLEKLLVNLDQVDGLEWIRVSYLQPAELRPGLIDTILATDKVVPYFDLSFQHAS 300

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
             +L+ M R   A  +  IID IRS  P+  + S+FI GFPGETD D     D + +   
Sbjct: 301 GPLLRRMRRFGDAESFLNIIDSIRSRCPEAGLRSNFITGFPGETDADVAVLADFLQRARL 360

Query: 360 AQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419
             A  F YS   GT  + +   VDE+V   R        RE      D  V Q  E  I 
Sbjct: 361 DVAGVFAYSDEEGTEAAGLDGHVDEDVVTAR--------REDLADLTDELVSQRAEDRIG 412

Query: 420 KHGKE-----KGKLVGRS----PWLQSVV--LNSKNHNIGDIIKV 453
             G+         ++GR+    P +   V  +++   ++GDI+ V
Sbjct: 413 TRGRVMVEEIDEAVIGRAEHQGPEVDGCVPLVDAAAVSVGDIVDV 457


>gi|314915477|gb|EFS79308.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes
           HL005PA4]
 gi|314920052|gb|EFS83883.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes
           HL050PA3]
 gi|314932066|gb|EFS95897.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes
           HL067PA1]
 gi|314955937|gb|EFT00337.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes
           HL027PA1]
 gi|314958142|gb|EFT02245.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes
           HL002PA1]
 gi|315101136|gb|EFT73112.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes
           HL046PA1]
 gi|327450811|gb|EGE97465.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes
           HL087PA3]
 gi|327453843|gb|EGF00498.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes
           HL083PA2]
 gi|328754231|gb|EGF67847.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes
           HL087PA1]
 gi|328754519|gb|EGF68135.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes
           HL025PA2]
          Length = 474

 Score =  157 bits (397), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 133/465 (28%), Positives = 209/465 (44%), Gaps = 56/465 (12%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N  DS  +     + G+  V+   +A+ +V+NTC   E+A +     L    +L
Sbjct: 7   SMGCARNDVDSEELAARMEAGGFRLVDDPAEAETVVVNTCGFIEQAKKDSVDTLLAAADL 66

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYY----RLPELLERARF- 145
           K + I       VV  GC+A+  G E+    P  + V+G   Y     RL  +L+     
Sbjct: 67  KGNGITTS----VVAVGCMAERYGRELAESLPEADAVLGFDDYGDIAGRLRTILDGGSLE 122

Query: 146 -----GKRVVDTDYSVEDKFERLSIVDGGY------------------NRKR---GVTAF 179
                 +R +     V+    R  +   G+                   R+R   G +A 
Sbjct: 123 THVPRDRRTLLPISPVDRPTARAEVSVPGHGTAPDLSASVTPDSGPRATRRRLGTGPSAP 182

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
           L +  GCD+ C FC +P+ RG  +SR ++++V+EAR L+D+GV E+ L+ +N +++ GK 
Sbjct: 183 LKMASGCDRRCAFCAIPHFRGSYLSRPIAEIVEEARWLVDHGVKEVFLVSENSSSY-GKD 241

Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
           L G+      LL +L ++ GL  +R +   P ++   LI      D ++PY  L  Q  S
Sbjct: 242 L-GDLRLLEKLLVNLDQVDGLEWIRVSYLQPAELRPGLIDTILATDKVVPYFDLSFQHAS 300

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
             +L+ M R   A  +  IID IRS  P+  + S+FI GFPGETD D     D + +   
Sbjct: 301 GPLLRRMRRFGDAESFLNIIDSIRSRCPEAGLRSNFITGFPGETDADVAVLADFLQRARL 360

Query: 360 AQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419
             A  F YS   GT  + +   VDE+V   R        RE      D  V Q  E  I 
Sbjct: 361 DVAGVFAYSDEEGTEAAGLDGHVDEDVVTAR--------REDLADLTDELVSQRAEDRIG 412

Query: 420 KHGKE-----KGKLVGRS----PWLQSVV--LNSKNHNIGDIIKV 453
             G+         ++GR+    P +   V  +++   ++GDI+ V
Sbjct: 413 TRGRVMVEEIDEAVIGRAEHQGPEVDGCVTLVDAAAVSVGDIVDV 457


>gi|146302669|ref|YP_001197260.1| MiaB-like tRNA modifying enzyme YliG [Flavobacterium johnsoniae
           UW101]
 gi|238065357|sp|A5FA30|RIMO_FLAJ1 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|146157087|gb|ABQ07941.1| MiaB-like tRNA modifying enzyme YliG [Flavobacterium johnsoniae
           UW101]
          Length = 437

 Score =  157 bits (397), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 128/453 (28%), Positives = 223/453 (49%), Gaps = 45/453 (9%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYE---RVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           V + GC  NVYDS  +     + G E      + D+ ++IV+NTC   + A  +  + + 
Sbjct: 13  VITLGCSKNVYDSEVLMGQLRANGKEVTHEATAKDEGNIIVINTCGFIDNAKAESVNMIL 72

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
              + K+  + +     V V GC+++    ++ +  P V+   G      LP+LL     
Sbjct: 73  EYADKKDKGLVDK----VFVTGCLSERYRPDLEKEIPNVDQYFGTT---ELPQLL----- 120

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
             + +  DY  E   ERL+     Y       A+L I EGCD+ C+FC +P  RG  +S+
Sbjct: 121 --KALGADYKHELLGERLTTTPKNY-------AYLKIAEGCDRPCSFCAIPLMRGSHVSQ 171

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLR 264
            + ++V EA+ L  NGV E+ L+ Q++  +   GLD  +K   ++LL +L+ ++G+  +R
Sbjct: 172 PIEKLVKEAQGLAKNGVKELILIAQDLTYY---GLDLYKKRNLAELLEALAAVEGIEWIR 228

Query: 265 ----YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
               Y T  P D+ + + +       +  Y+ +P+Q  SD ILKSM R  T  +  Q++ 
Sbjct: 229 LHYAYPTGFPMDVLELMKREPK----ICNYIDIPLQHISDSILKSMRRGTTQAKTTQLLK 284

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
             R+  P +AI +  IVG+PGET +DF    + V ++ + +   F YS    T    + +
Sbjct: 285 DFRAAVPGMAIRTTLIVGYPGETQEDFEILKEFVQEMKFDRMGCFAYSHEENTHAYLLED 344

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQ 436
            V ++VK  R   + +   +     N   VGQ+   +I++  KE    VGR    SP + 
Sbjct: 345 DVPDDVKQARANEIMELQSQISWDLNQEKVGQVFRCIIDR--KEGAHFVGRTEFDSPDVD 402

Query: 437 S-VVLNSKNHNI--GDIIKVRITDVKISTLYGE 466
           + V++++  H +  G+ + ++I +     LYGE
Sbjct: 403 NEVLIDASKHYVKTGEFVNIKIIEATEFDLYGE 435


>gi|332527184|ref|ZP_08403257.1| ribosomal protein S12 methylthiotransferase [Rubrivivax
           benzoatilyticus JA2]
 gi|332111608|gb|EGJ11590.1| ribosomal protein S12 methylthiotransferase [Rubrivivax
           benzoatilyticus JA2]
          Length = 462

 Score =  157 bits (397), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 132/466 (28%), Positives = 211/466 (45%), Gaps = 48/466 (10%)

Query: 20  QCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEK 79
           Q  VP   F  S GC   + DS  +     ++GY    S   ADL+++NTC   + A ++
Sbjct: 2   QETVPTVAFA-SLGCPKALTDSELILTQLAAEGYRTSKSFAGADLVIVNTCGFIDDAVKE 60

Query: 80  VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEE----ILRRSPIVNVVVGPQTYYR 135
               +G         + E G   V+V GC+    G++    + +  P V  V GP     
Sbjct: 61  SLDTIGEA-------LAENGR--VIVTGCLGARAGDDGGNMVQQVHPKVLAVTGPHATQE 111

Query: 136 LPELLER--ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC 193
           + + + R   +     VD    V  +F      + G        A+L I EGC+  C+FC
Sbjct: 112 VMDAVHRHVPKPHDPFVDLVPEVRAEFRG----EAGIKLTPRHYAYLKISEGCNHRCSFC 167

Query: 194 VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KC 245
           ++P  RG  +SR + +V+ EA+ L +NGV E+ ++ Q+  A+      R    DG   K 
Sbjct: 168 IIPTMRGDLVSRPVGEVLSEAKALFENGVKELLVVSQDTGAYGVDVQYRTGFWDGRPVKT 227

Query: 246 TFSDL---LYSLSEIKG-LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
            F+DL   L  L+E  G  VRL Y   +P       + A G +   +PYL +P Q     
Sbjct: 228 RFADLCEQLARLAEAHGAWVRLHYVYPYPHVDDVLPLMAEGRI---LPYLDVPFQHAHPD 284

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
           +LK M R  +     + + R R + P++ + S FI GFPGET+ +F+  +D V +    +
Sbjct: 285 VLKRMKRPASGERNLERLARWRELCPELVVRSTFIAGFPGETEAEFQTLLDFVAEAQIDR 344

Query: 362 AFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKH 421
           A  F YSP  G P + +   + + V+ ER     +      V+     VGQ ++VL++ H
Sbjct: 345 AGCFAYSPVAGAPANELPGALPDAVREERRARFMEVAEAVSVAKLQRRVGQTMQVLVD-H 403

Query: 422 GKEKGKL--VGRS----PWLQSVVL------NSKNHNIGDIIKVRI 455
               G+   VGRS    P +   V        S+   +G+ ++ RI
Sbjct: 404 APALGRKGGVGRSYADAPEIDGSVRLLPPQKASRTLKVGEFVRARI 449


>gi|85373609|ref|YP_457671.1| hypothetical protein ELI_03910 [Erythrobacter litoralis HTCC2594]
 gi|84786692|gb|ABC62874.1| hypothetical protein ELI_03910 [Erythrobacter litoralis HTCC2594]
          Length = 391

 Score =  157 bits (397), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 111/395 (28%), Positives = 183/395 (46%), Gaps = 45/395 (11%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V S GC++N+ +S ++  +  S+           D++V+N+C +  +A  +    + + R
Sbjct: 6   VISLGCRLNISESAQIRALLASED----------DVVVVNSCAVTSEAVRQTRQAIRKAR 55

Query: 89  NLK-NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147
             + N+R+        +V GC A  E ++ L   P V+ +V              A+   
Sbjct: 56  KARPNARL--------LVTGCAADIERDQ-LAAMPEVDGLVA-----------NAAKLDP 95

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
           R  +            + V   + R     AF+ +Q GCD  CTFCV+P  RG   S S+
Sbjct: 96  RAWNVPAP-------QAPVTPQHTR-----AFVAVQNGCDHACTFCVIPQGRGKSQSLSI 143

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
           ++V+      +D G  E+ L G +V +W G  L G     S +   L     L RLR ++
Sbjct: 144 AEVLRTVEHHLDRGAAEVVLTGVDVTSW-GHDLPGSPALGSLVRAVLDAFPTLTRLRMSS 202

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
               ++ + L         +MP++HL +Q G D ILK M RRH+  +   ++ R ++ RP
Sbjct: 203 IDGIEVDETLFDLFAHEPRVMPHIHLSLQHGHDLILKRMKRRHSRADAFDLVFRFKAARP 262

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
           +IAI +D I GFP ET++   A + ++ ++       F YSPR GTP + M  QVD    
Sbjct: 263 EIAIGADLIAGFPTETEEHHAANLAIIRELDIVHGHIFPYSPRPGTPAARM-PQVDRPTI 321

Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422
             R   L+  + E +  +  A + Q   VL E+ G
Sbjct: 322 KRRAAELRAAVAEVRDPWLRAQLDQPHSVLAERDG 356


>gi|149045299|gb|EDL98385.1| CDK5 regulatory subunit associated protein 1-like 1 (predicted),
           isoform CRA_b [Rattus norvegicus]
          Length = 442

 Score =  157 bits (397), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 110/377 (29%), Positives = 183/377 (48%), Gaps = 35/377 (9%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           Q+ +++++GC  N  D   M     + GY+   +  DADL +LN+C ++  A +    F 
Sbjct: 63  QKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAED---HFR 119

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             I+       K      VV+AGCV QA+  +   +      ++G Q   R+ E++E   
Sbjct: 120 NSIKKAHEENKK------VVLAGCVPQAQPRQDYLKG---LSIIGVQQIDRVVEVVEETI 170

Query: 145 FGKRVVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            G  V       E   +RL  + +D    RK  +   ++I  GC   CT+C   + RG  
Sbjct: 171 KGHSVRLLGQKKESG-KRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNL 229

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-RGKGLDGEKCTFSDLLYSLSEI---- 257
            S  + ++V+ A++    GVCEI L  ++  A+ R  G D        LL+ L E+    
Sbjct: 230 ASYPIDELVERAKQSFQEGVCEIWLTSEDTGAYGRDIGTD-----LPTLLWKLVEVIPEG 284

Query: 258 ----KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
                G+    Y   H  +M+  L     +   +  +LH+PVQS SD +L  M R +   
Sbjct: 285 AMLRLGMTNPPYILEHLEEMAKIL-----NHPRVYAFLHIPVQSASDSVLMDMKREYCVA 339

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
           ++++++D ++   P I I++D I GFPGETD DF+ T+ LV++  +   F  ++ PR GT
Sbjct: 340 DFKRVVDFLKEKVPGITIATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGT 399

Query: 374 PGSNMLEQVDENVKAER 390
           P +   +QV  +VK +R
Sbjct: 400 PAAKA-KQVPAHVKKQR 415


>gi|258652985|ref|YP_003202141.1| MiaB-like tRNA modifying enzyme YliG [Nakamurella multipartita DSM
           44233]
 gi|258556210|gb|ACV79152.1| MiaB-like tRNA modifying enzyme YliG [Nakamurella multipartita DSM
           44233]
          Length = 485

 Score =  157 bits (397), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 123/436 (28%), Positives = 203/436 (46%), Gaps = 48/436 (11%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERV-NSMDDADLIVLNTCHIREKAAEKVYSFL 84
           R  + + GC  N  DS  +     + GY+ V +  + AD+IV+NTC   + A +     +
Sbjct: 10  RVGLVTLGCARNDVDSSELAGRLQADGYQLVTDEAEPADVIVVNTCAFVDAAKKD---SI 66

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             +    ++  K      VV  GC+A+  G E+ +  P  + V+G   Y RL  LL    
Sbjct: 67  DAVLAAADTGAK------VVAVGCMAERYGAELAQALPEADAVLGFDAYPRLGSLLGDVL 120

Query: 145 FGKRVVDTDYSVEDK--------FERLSIVDG----GYNR---------KRGVTAFLTIQ 183
            G R     ++  D+          R   V G    G+             G  A L I 
Sbjct: 121 DGHR--PAAHTPVDRRTLLPISPVARAGAVSGVSVPGHAAGPVVPRTLLDEGPVAPLKIA 178

Query: 184 EGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
            GCD+ CTFC +P  RG  +SR  ++++ EA  L+D GV E+ L+ +N  ++ GK L G+
Sbjct: 179 SGCDRRCTFCAIPSFRGAFVSRPPAEILQEAAWLVDQGVREVVLVSENTTSY-GKDLPGD 237

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
           +   +DLL  L+++ GL R+R +   P +    LI+A  ++  +  Y  +  Q  S  +L
Sbjct: 238 R-QLADLLAGLAQVPGLTRVRLSYLQPAETRPWLIQAIAEIPAVADYFDMSFQHSSPAVL 296

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL-----VDKIG 358
           + M R  +   + Q++++IR   PD  I S+ IVGFPGET++D            +D +G
Sbjct: 297 RRMRRYGSTDSFLQLVEQIRVAAPDAGIRSNVIVGFPGETEEDLAELERFLVGARLDAVG 356

Query: 359 YAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI 418
                 F YS   GT    +  + DE+V AER+  + + + E      +  +G  + V++
Sbjct: 357 V-----FGYSDEDGTEALGLAGKHDEDVIAERVERITELVEELSAQRAEDRIGSQLLVMV 411

Query: 419 EKHGKEK---GKLVGR 431
           ++   +    G  VGR
Sbjct: 412 DRAAGDPDGDGMAVGR 427


>gi|260432906|ref|ZP_05786877.1| conserved hypothetical protein [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260416734|gb|EEX09993.1| conserved hypothetical protein [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 463

 Score =  157 bits (397), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 128/456 (28%), Positives = 208/456 (45%), Gaps = 44/456 (9%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC   + DS R+     ++GY        AD +++NTC   + A  +    +G     
Sbjct: 33  SLGCPKALVDSERILTRLRAEGYGISPDYAGADAVIVNTCGFLDSAKAESLEAIGEA--- 89

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               + E G   V+V GC+  AE + I    P +  V GP  Y ++ + +  A      V
Sbjct: 90  ----LVENGK--VIVTGCLG-AEPDYIREHHPRILAVTGPHQYEQVLDAVHAA------V 136

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
             D    + F  L    G     R  + +L I EGC+  C FC++P  RG   SR    V
Sbjct: 137 PPD---PNPFVDLLPASGVKLTPRHYS-YLKISEGCNHKCKFCIIPDMRGKLASRPAHAV 192

Query: 211 VDEARKLIDNGVCEITLLGQN-----------VNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           + EA KL+D+GV E+ ++ Q+           VN W+ + +   +   +DL   L ++  
Sbjct: 193 LREAEKLVDSGVRELLVISQDTSAYGLDRKYDVNPWKDREV---RSHITDLARELGQMDA 249

Query: 260 LVRLRYTTSHP--RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
            VRL Y   +P  R++   +  A  +L   +PYL +P Q     +LK M R   A +   
Sbjct: 250 WVRLHYVYPYPHVRELIPLMADAGCNL---LPYLDIPFQHAHPDVLKRMARPAAAAKTLD 306

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
            I   R + PDI + S FIVG+PGET+ +F+  +D +D+    +   FKY    G   ++
Sbjct: 307 EIAAWRDICPDITLRSTFIVGYPGETEAEFQTLLDWMDEAQLDRVGCFKYENVDGARSND 366

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE--KHGKEKGKLVGRSPWL 435
           + + V E VK ER     +K +    +   A VGQIIEV+++   H     +    +P +
Sbjct: 367 LPDHVPEEVKQERWERFMEKAQAISEAKLAAKVGQIIEVIVDDVDHEAATCRTKADAPEI 426

Query: 436 QSVVL---NSKNHNIGDIIKVRITDVKISTLYGELV 468
              +      ++   GDI+ V++ +     L+G L+
Sbjct: 427 DGNLFIDDGFEDLKPGDIVAVQVDEAGEYDLWGRLL 462


>gi|209883419|ref|YP_002287276.1| hypothetical protein OCAR_4262 [Oligotropha carboxidovorans OM5]
 gi|209871615|gb|ACI91411.1| conserved hypothetical protein [Oligotropha carboxidovorans OM5]
          Length = 420

 Score =  157 bits (397), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 121/397 (30%), Positives = 189/397 (47%), Gaps = 32/397 (8%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           ++GC++N+ +S   E M    G      +DDA  +++NTC +  +A       + + R  
Sbjct: 7   TFGCRLNLAES---ETMRAEAGRA---GLDDA--VIVNTCAVTNEA-------VAQARQT 51

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
                +E     ++V GC AQ   E +    P V+ V+G           E  +  +R  
Sbjct: 52  IRRLRREAPRRRIIVTGCAAQTNAE-MFAAMPEVDRVLGNDDKMHA----EAWQATRRAF 106

Query: 151 DTD----YSVEDKFE----RLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           D D     +V D          +VDG +N +    AF+ +Q GCD  CTFC++PY RG  
Sbjct: 107 DVDDGEKVAVADIMAVREMAPHLVDGFHNGQP--RAFVQVQNGCDHRCTFCIIPYGRGNS 164

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            S ++   VD+ RKL++ G  EI L G ++ ++ G  L G     + +   L  +  L R
Sbjct: 165 RSVAMGAAVDQVRKLVEGGCPEIVLTGVDITSY-GADLPGAPKLGTLVKQILKHVPELKR 223

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LR ++    +    L+    D + LMP+LHL +Q+G D ILK M RRH   +     +++
Sbjct: 224 LRLSSIDSVEADHDLLDVIADNERLMPHLHLSLQAGDDLILKRMKRRHARADAVAFCEQV 283

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R +RPD+A  +D I GFP ET+  F  ++ LV+         F YS R GTP + M  QV
Sbjct: 284 RRLRPDVAFGADLIAGFPTETEVMFERSLALVEDCDLTFLHVFPYSKRPGTPAAKM-PQV 342

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419
           +     ER   L++           + +G+  EVLIE
Sbjct: 343 EGRAIKERARLLREAGDAALKRRLASEIGKTREVLIE 379


>gi|45658385|ref|YP_002471.1| hypothetical protein LIC12543 [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|81567903|sp|Q72PC8|RIMO_LEPIC RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|45601628|gb|AAS71108.1| conserved hypothetical protein [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 437

 Score =  157 bits (397), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 111/446 (24%), Positives = 213/446 (47%), Gaps = 26/446 (5%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++F++ + GC  N+ DS+ M      +G+   +  +++D   +NTC   + A E+    +
Sbjct: 3   KKFYITTLGCPKNIADSMSMHHSLLEEGFTPASLPEESDFHFINTCTFIQSATEETIQTI 62

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
                L  +++K+     +VV GC A+   + I    P V++  G   Y +  ++L R +
Sbjct: 63  -----LSAAQVKKQNHQKLVVVGCFAERYPDNIHSEIPEVDLFFGTGKYSQAGKIL-REK 116

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
           F +         +   ER  +     N  +   A++ + +GC++ C+FC++P  RG    
Sbjct: 117 FPELSPSQLEFNDSLLERWKLSSKIENYSKPY-AYVKVSDGCNRGCSFCIIPSFRGKFAE 175

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
             L  ++ +  + I  G  EI L+ Q+   +   G D E     D++  ++EI  L  LR
Sbjct: 176 SPLDDILRDTNRAIRAGAKEICLVSQDTVYY---GRDSE--ILLDMVRKVAEIDSLEILR 230

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
               +P   ++ LI+  G+   + PYL  P+Q  S +ILK MNR   +  ++ +    R 
Sbjct: 231 LLYLYPDKKTEKLIRLMGETSKIAPYLESPLQHVSSKILKVMNRTGESSYFKDLFSLARE 290

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           V+P + I + FI+G+PGE  +D    +  ++     +   F YSP+ GT G+ + + V E
Sbjct: 291 VKPGLEIRTSFIIGYPGEEPEDVDQILRFIEDTRPEKVNLFSYSPQEGTKGAQLKQTVSE 350

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVVL 440
             K++R+  ++    E     +++ +G+  + +++  G E G+ V R    +P +  VV 
Sbjct: 351 KEKSKRINLIRDSHLEILEEIHESRIGRTYDAIVD--GIEDGQAVVRRFQDAPEMDEVVY 408

Query: 441 NSKNHNIGDI--IKVRITDVKISTLY 464
                 + D+  +  RI  V+I + Y
Sbjct: 409 ------VDDVSLLPGRIGKVRIDSFY 428


>gi|315637089|ref|ZP_07892312.1| 2-methylthioadenine synthetase [Arcobacter butzleri JV22]
 gi|315478625|gb|EFU69335.1| 2-methylthioadenine synthetase [Arcobacter butzleri JV22]
          Length = 422

 Score =  157 bits (397), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 118/437 (27%), Positives = 216/437 (49%), Gaps = 32/437 (7%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+ +F K++GC+ NV+D+  M  M   + +E     ++A+++V+N+C +   A     ++
Sbjct: 8   PKVYF-KTFGCRTNVFDTQVM--MSNLKDFEVTLDENEANIVVINSCTVTNSADSTARTY 64

Query: 84  LGRIRNL-KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
           +  ++ L KN R        V+  GC    +GE + + + + ++    Q       LL  
Sbjct: 65  INSLKKLPKNPR--------VIFTGCGVWTKGETLFKENKVDSLFGHSQKENINDLLLNE 116

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            RF +     D +  DK    +IV+    + R   AF+ IQEGCD  C++C++PY RG  
Sbjct: 117 ERFFEA---GDLTHIDK----TIVEEFVGKSR---AFIKIQEGCDFRCSYCIIPYVRGDA 166

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            S S  +++++   L  NG  E  L G NV ++  K    +  + + LL  +S IKG+ R
Sbjct: 167 RSYSEDKILEQVTTLAANGFGEFILTGTNVGSYGKK----QHTSLAKLLKKMSLIKGVRR 222

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R  +  P  + D   K   +   +  +LH+ +Q  S  +LK MNRR+      ++ + +
Sbjct: 223 IRMGSIEPIQIDDEF-KEIINEPFMAKHLHIALQHTSKEMLKIMNRRNKVLSDLELFEFL 281

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R      A+ +DFIVG PGET+  ++  M+ + +       +F YS R GTP + M  Q+
Sbjct: 282 R--ENGYALGTDFIVGHPGETEALWKEAMENLHRFPLTHVHAFTYSKRDGTPSATMKPQI 339

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
             ++   R   L   + ++  +F      + +EVL+E+  ++ GK +G   +   + ++S
Sbjct: 340 KGDIAKVRYNELINIIEQKNYNFRKEN-KKTLEVLVEQ--EKNGKYIGLDQFFNQIEIDS 396

Query: 443 KNHNIGDIIKVRITDVK 459
               +GD + +   +VK
Sbjct: 397 TADLVGDWVYINDYEVK 413


>gi|291519254|emb|CBK74475.1| RNA modification enzyme, MiaB family [Butyrivibrio fibrisolvens
           16/4]
          Length = 382

 Score =  157 bits (397), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 107/363 (29%), Positives = 191/363 (52%), Gaps = 27/363 (7%)

Query: 103 VVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER-ARFGKRVVDTDYSVED--- 158
           VV AGC  Q  G+E+       ++++G     +  EL+E+  ++ + +  +D  + D   
Sbjct: 14  VVAAGCYVQNFGKEVADELG-ADIILGNN---KKNELVEKIHQYFEGLDSSDGPILDWID 69

Query: 159 ------KFERLSI-VDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVV 211
                  +E + I  D  + R     AF+ +Q+GC++FC++C++P+ RG   SR +  VV
Sbjct: 70  INEGNVSYENMHIEKDSEHTR-----AFVKVQDGCNQFCSYCIIPFARGRIRSRDIEDVV 124

Query: 212 DEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPR 271
           +E   L  NG  E+ + G +++++ G G D      +DLL ++ +I G+ R+R  +  P+
Sbjct: 125 EEVTGLATNGYKEVVITGIHLSSY-GNGTD---YNLADLLEAIEKIDGVERIRLGSLEPQ 180

Query: 272 DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAI 331
            +++   K    L  + P+ HL +QSG D +L  MNR++T  EY + ++ +R    + AI
Sbjct: 181 IVTEEFAKRVSALSKMCPHFHLSLQSGCDSVLVRMNRKYTIEEYTRGVEILRKYFENPAI 240

Query: 332 SSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERL 391
           ++D IVGFPGET+++F  T   V  I + +   F YS R GT  + M  Q+   VK ER 
Sbjct: 241 TTDIIVGFPGETEEEFNITASYVKDIAFYELHVFAYSKRKGTKAATMPGQLTNAVKKERS 300

Query: 392 LCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK--LVGRS-PWLQSVVLNSKNHNIG 448
             L     E   S+  + VG+ +++L E+     GK   +G S  +++  +L   + +  
Sbjct: 301 AKLISIGNETTESYRMSFVGKELDILFEEKAVIDGKEYFIGFSREYIKCAILAEDSKDFT 360

Query: 449 DII 451
           ++I
Sbjct: 361 NVI 363


>gi|300703948|ref|YP_003745550.1| 2-methylthioadenine synthetase [Ralstonia solanacearum CFBP2957]
 gi|299071611|emb|CBJ42935.1| putative 2-methylthioadenine synthetase [Ralstonia solanacearum
           CFBP2957]
          Length = 459

 Score =  157 bits (397), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 135/477 (28%), Positives = 223/477 (46%), Gaps = 65/477 (13%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  FV S GC   + DS ++     ++GYE   +   ADL+V+NTC   ++A ++    
Sbjct: 15  PRVGFV-SLGCPKALVDSEQIITQLRAEGYEISGTYGGADLVVVNTCGFIDEAVQESLDA 73

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQ---AEGEEILRR-SPIVNVVVGPQTYYRLPEL 139
           +G         + E G   V+V GC+     A G +I+    P V  V GP   + L E+
Sbjct: 74  IGEA-------LAENGK--VIVTGCLGAKKDATGNDIITSVHPKVLAVTGP---HALGEV 121

Query: 140 LERARFGKRVVDTDYS-VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
           +E        V T      D F  L +   G        A+L I EGC+  C+FC++P  
Sbjct: 122 ME-------AVHTHLPKPHDPFIDL-VPPQGIKLTPKHYAYLKISEGCNHRCSFCIIPSM 173

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTF 247
           RG  +SR +++V+ EA  L+  GV E+ ++ Q+ +A           W G+ L   K   
Sbjct: 174 RGDLVSRPVAEVMLEAENLLKAGVKELLVISQDTSAYGVDVKFRTGFWNGRPL---KTRM 230

Query: 248 SDLLYSLSEIKG----LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
           ++L+ +L E+       VRL Y   +P       + A G +   +PYL +P+Q     +L
Sbjct: 231 TELVGALGELAAQYGAWVRLHYVYPYPSVDEVMPLMAEGKV---LPYLDVPLQHAHSEVL 287

Query: 304 KSMNRRHTAYEYRQIIDRIRSVR---PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
           K M R   A    + +DRIR+ R   P++ I S FI GFPGET+++F+  +D + +    
Sbjct: 288 KRMKRPANA---EKTLDRIRAWREVCPELTIRSTFIAGFPGETEEEFQTLLDFIGEAELD 344

Query: 361 QAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
           +   F YSP  G   +++   + + V+ ER     +             VG+ + VL+++
Sbjct: 345 RVGCFAYSPVEGATANDLPGALPDEVREERRARFMEVAERVSARRLQRKVGKTLRVLVDE 404

Query: 421 HGKEKGKLVGRS----PWLQSVVLNS------KNHNIGDIIKVRITDVKISTLYGEL 467
             ++ G  +GRS    P +  +V  +      K +  GD + V+IT      L+GE+
Sbjct: 405 VNQDGG--IGRSSADAPEIDGLVYIAPPSKPYKRYKTGDFVSVKITGADGHDLWGEV 459


>gi|313764484|gb|EFS35848.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes
           HL013PA1]
          Length = 474

 Score =  157 bits (397), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 133/465 (28%), Positives = 209/465 (44%), Gaps = 56/465 (12%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N  DS  +     + G+  V+   +A+ +V+NTC   E+A +     L    +L
Sbjct: 7   SMGCARNDVDSEELAARMEAGGFRFVDDPAEAETVVVNTCGFIEQAKKDSVDTLLAAADL 66

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYY----RLPELLERARF- 145
           K + I       VV  GC+A+  G E+    P  + V+G   Y     RL  +L+     
Sbjct: 67  KGNGITTS----VVAVGCMAERYGRELAESLPEADAVLGFDDYGDIAGRLRTILDGGSLE 122

Query: 146 -----GKRVVDTDYSVEDKFERLSIVDGGY------------------NRKR---GVTAF 179
                 +R +     V+    R  +   G+                   R+R   G +A 
Sbjct: 123 THVPRDRRTLLPISPVDRPTARAEVSVPGHGTAPDLSASVTPDSGPRATRRRLGTGPSAP 182

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
           L +  GCD+ C FC +P+ RG  +SR ++++V+EAR L+D+GV E+ L+ +N +++ GK 
Sbjct: 183 LKMASGCDRRCAFCAIPHFRGSYLSRPIAEIVEEARWLVDHGVKEVFLVSENSSSY-GKD 241

Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
           L G+      LL +L ++ GL  +R +   P ++   LI      D ++PY  L  Q  S
Sbjct: 242 L-GDLRLLEKLLVNLDQVDGLEWIRVSYLQPAELRPGLIDTILATDKVVPYFDLSFQHAS 300

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
             +L+ M R   A  +  IID IRS  P+  + S+FI GFPGETD D     D + +   
Sbjct: 301 GPLLRRMRRFGDAESFLNIIDSIRSRCPEAGLRSNFITGFPGETDADVAVLADFLQRARL 360

Query: 360 AQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419
             A  F YS   GT  + +   VDE+V   R        RE      D  V Q  E  I 
Sbjct: 361 DVAGVFAYSDEEGTEAAGLDGHVDEDVVTAR--------REDLADLTDELVSQRAEDRIG 412

Query: 420 KHGKE-----KGKLVGRS----PWLQSVV--LNSKNHNIGDIIKV 453
             G+         ++GR+    P +   V  +++   ++GDI+ V
Sbjct: 413 TRGRVMVEEIDEAVIGRAEHQGPEVDGCVTLVDAAAVSVGDIVDV 457


>gi|329295563|ref|ZP_08252899.1| ribosomal protein S12 methylthiotransferase [Plautia stali
           symbiont]
          Length = 345

 Score =  157 bits (397), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 111/365 (30%), Positives = 177/365 (48%), Gaps = 44/365 (12%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P R    S GC  N+ DS R+     ++GY+ V   DDA+++++NTC   + A ++    
Sbjct: 7   PPRVGFVSLGCPKNLVDSERILTELRTEGYDVVPRYDDAEIVIINTCGFIDSAVQESLEA 66

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G   N       E G   V+V GC+  A+ ++I    P V  + GP +Y          
Sbjct: 67  IGEALN-------ENGK--VIVTGCLG-AKVDQIREVHPKVLEITGPHSY---------- 106

Query: 144 RFGKRVVDTDYSVEDKFER---LSIV-DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
              ++V+   ++   K E    LS+V + G        A+L I EGC+  CTFC++P  R
Sbjct: 107 ---EQVLSHVHTYVPKPEHNPFLSLVPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMR 163

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFS 248
           G   SR +  V+DEA++L++ GV E+ ++  + +A           W G  +   K +  
Sbjct: 164 GDLDSRPIDAVLDEAKRLVEAGVKELLVISLDTSAYGVDVKHRTGFWNGSPV---KTSMV 220

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
            L   L+++   VRL Y   +P       + A G +   +PY  +P+Q  S RILK M R
Sbjct: 221 SLCEQLAKLGVWVRLHYVYPYPHVDDVIPLMAEGKI---LPYFDIPLQHASPRILKLMKR 277

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
             T     + I R R + P++ + S FIVGFPGET++DF+  +D + +        F+YS
Sbjct: 278 PGTVERTLERIKRWREICPELTLRSTFIVGFPGETEEDFQMLLDFLREARLDLVGCFQYS 337

Query: 369 PRLGT 373
           P  G 
Sbjct: 338 PVEGA 342


>gi|296282867|ref|ZP_06860865.1| ribosomal protein S12 methylthiotransferase [Citromicrobium
           bathyomarinum JL354]
          Length = 461

 Score =  157 bits (397), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 124/470 (26%), Positives = 213/470 (45%), Gaps = 51/470 (10%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P++  + S GC   + DS R+     + GY        AD++++NTC   + A E+    
Sbjct: 11  PKKVGMVSLGCPKALVDSERILTRLRADGYAMSADYAGADIVLVNTCGFLDSAKEESLQA 70

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G         I E G   V+V GC+ + E + I    P V  V G   Y ++ E +   
Sbjct: 71  IGEA-------IAENG--RVIVTGCMGE-EADAIRAAHPQVLAVTGAHQYEQVVEAVHEH 120

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
               +    D   +     + +    Y+       +L I EGC+  C FC++P  RG   
Sbjct: 121 APPSQGPYIDLIPQPDLADIKLTPRHYS-------YLKISEGCNHSCAFCIIPDLRGKLA 173

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLY 252
           SR +  V+ EA KL+  G  E+ ++ Q+ +A           W+G+ +   +   +DL  
Sbjct: 174 SRRIDAVLREAEKLVAAGTKELLVISQDTSAYGVDTRHDAREWKGREV---RAHMTDLAR 230

Query: 253 SLSEIK------GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306
            L +++        VRL Y   +P       + A G   +L PYL +P Q  +  +LK M
Sbjct: 231 ELGQLRTDQGRPPWVRLHYVYPYPHVDQVIPLMAEG---LLTPYLDIPFQHAAPSVLKRM 287

Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
            R     +  + +   R + PDIA+ S F+VGFPGET++DF+  +D +++    +  +F+
Sbjct: 288 KRPANEAKVLERLKGWREICPDIAVRSSFVVGFPGETEEDFQYLLDWLEEAQLDRVGAFR 347

Query: 367 YSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK--E 424
           + P  G   + + + V E VK ER   + +       +   A +G+ + V+I++ G+  E
Sbjct: 348 FEPVEGAAANALPDPVPEAVKEERYARIMEATARISAAKLQAKIGRTLPVIIDEVGEPDE 407

Query: 425 KGKL--VGRS----PWLQSVVL---NSKNHNIGDIIKVRITDVKISTLYG 465
            G +   GRS    P +   V     S +   GDI++V++ D     L+G
Sbjct: 408 DGDIGATGRSQADAPEIDGNVFLRNVSASLAPGDIVEVQVEDADEHDLFG 457


>gi|193213382|ref|YP_001999335.1| MiaB-like tRNA modifying enzyme [Chlorobaculum parvum NCIB 8327]
 gi|193086859|gb|ACF12135.1| MiaB-like tRNA modifying enzyme [Chlorobaculum parvum NCIB 8327]
          Length = 456

 Score =  157 bits (397), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 123/410 (30%), Positives = 205/410 (50%), Gaps = 28/410 (6%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N  ++  + DM  ++G++  +  D AD+I+++TC +  +A  K        R  
Sbjct: 16  TLGCKVNYAETASIVDMLVAEGWQFHDIRDGADIILIHTCAVTGEAERKS-------RQQ 68

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               IK+  +  VVVAGC AQ   E I +    V++V+G    +     LE     +R V
Sbjct: 69  IRKAIKKHPNAKVVVAGCYAQLAPEHIAQIDG-VSLVLGMAEKFDRSHYLEEPDRKERNV 127

Query: 151 DTDYS-VEDKFERLSIVDGGYNRKRGVT-AFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
               S VE               ++G T AFL IQ+GC   C +C +P  RG   S  L+
Sbjct: 128 RVRVSPVEASSAAHVASSLIRQPEKGRTRAFLKIQDGCSFGCAYCAIPLARGRSRSVPLA 187

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
            V++ A  + + G  EI L G N+  +     DG+   F+DLL  L E+  + R+R ++ 
Sbjct: 188 TVMERAAAIAEAGYREIVLTGINIADYH----DGQH-GFTDLLRHLEELD-VSRIRISSI 241

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
            P+ + D LI+       +MP+ HLP+QSGSD++LK+M R++    YR+ + R  S    
Sbjct: 242 EPQFLDDELIELVAGSTKIMPHFHLPLQSGSDKVLKAMGRQYDTALYRERLLRAVSSIRG 301

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ------- 381
            AI +D +VG+PGE++ DF      ++++  A    F  S R GT  S  + +       
Sbjct: 302 CAIGADVMVGYPGESEQDFETMYRFIEELPVAYLHVFSCSVRPGTRLSREIAEKRVSRVV 361

Query: 382 -VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLV 429
             + + +A RL  L ++L  +   F  + +G+ + VL E+ G +  GK++
Sbjct: 362 SAEASRRATRLAQLGQQLERR---FASSFIGRQVRVLFEEGGADADGKML 408


>gi|27375587|ref|NP_767116.1| hypothetical protein bll0476 [Bradyrhizobium japonicum USDA 110]
 gi|27348724|dbj|BAC45741.1| bll0476 [Bradyrhizobium japonicum USDA 110]
          Length = 417

 Score =  157 bits (397), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 126/405 (31%), Positives = 188/405 (46%), Gaps = 40/405 (9%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           ++GC++N +++  +       G          D IV+N+C +  +A  +       IR L
Sbjct: 7   TFGCRLNAFEAEVIRSKAEGAGL--------VDTIVINSCAVTNEAVAQARQ---SIRKL 55

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR----FG 146
           K  R        +VV GC AQ +   +      V+ VVG     R  +    AR     G
Sbjct: 56  KRER----PGARIVVTGCAAQTQ-SRMFADMAEVDRVVGNDDKMR-SDAWREARDAFDIG 109

Query: 147 KR---VVDTDYSVEDKFERLSIVDG---GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
            R    V    +V++    L  VDG   G  R      F+ +Q GCD  CTFC++P+ RG
Sbjct: 110 AREKIAVSDIMAVKEMAPHL--VDGFASGLPR-----VFVQVQNGCDHRCTFCIIPFGRG 162

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
              S  +  VV++ R L + G  EI L G ++ ++ G  L G           L  +  L
Sbjct: 163 NSRSVPMGAVVEQVRALAERGHAEIVLTGVDLTSY-GADLPGAPKLGMLTKQILRHVPEL 221

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            RLR ++    +  + L+ A  D   LMP+LHL +QSG D ILK M RRH   +     D
Sbjct: 222 KRLRISSIDSIEADNDLLDAIADDARLMPHLHLSLQSGDDMILKRMKRRHLRGDAIAFCD 281

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R +RPD+A  +D I GFP ET+  F  ++DLV++ G      F YSPR GTP + M +
Sbjct: 282 QVRRLRPDVAFGADIIAGFPTETEAMFSRSLDLVEECGLTFLHVFPYSPRPGTPAARMPQ 341

Query: 381 QVDENVK--AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK 423
                +K  A RL    +    Q++    A +G   +VLIE   +
Sbjct: 342 VAGPEIKERARRLRAAGEAALRQRLQ---AEIGATRDVLIESESQ 383


>gi|187928991|ref|YP_001899478.1| ribosomal protein S12 methylthiotransferase [Ralstonia pickettii
           12J]
 gi|238066577|sp|B2UFU5|RIMO_RALPJ RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|187725881|gb|ACD27046.1| MiaB-like tRNA modifying enzyme YliG [Ralstonia pickettii 12J]
          Length = 453

 Score =  157 bits (397), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 135/477 (28%), Positives = 224/477 (46%), Gaps = 65/477 (13%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  FV S GC   + DS ++     ++GYE   +   ADL+V+NTC   ++A ++    
Sbjct: 9   PKVGFV-SLGCPKALVDSEQIITQLRAEGYEISGTYGGADLVVVNTCGFIDEAVQESLDA 67

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQ---AEGEEILRR-SPIVNVVVGPQTYYRLPEL 139
           +G         + E G   V+V GC+     A G++I+    P V  V GP   + L E+
Sbjct: 68  IGEA-------LAENGK--VIVTGCLGAKKDASGQDIITSVHPKVLAVTGP---HALGEV 115

Query: 140 LERARFGKRVVDTDYS-VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
           +E        V T      D F  L +   G        A+L I EGC+  C+FC++P  
Sbjct: 116 ME-------AVHTHLPKPHDPFIDL-VPPQGIKLTPKHYAYLKISEGCNHRCSFCIIPSM 167

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTF 247
           RG  +SR +++V+ EA  L+  GV E+ ++ Q+ +A           W G+ L   K   
Sbjct: 168 RGDLVSRPVAEVMLEAENLLKAGVKELLVISQDTSAYGVDVKFRMGFWNGRPL---KTRM 224

Query: 248 SDLLYSLSEIK----GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
           ++L+ +L E+       VRL Y   +P       + A G +   +PYL +P+Q     +L
Sbjct: 225 TELVGALGELASQYGAWVRLHYVYPYPSVDEVMPLMAEGKV---LPYLDVPLQHAHPDVL 281

Query: 304 KSMNRRHTAYEYRQIIDRIRSVR---PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
           K M R   A    + +DRIR+ R   P++ I S FI GFPGET+++F+  +D + +    
Sbjct: 282 KRMKRPANA---EKTLDRIRAWREVCPELTIRSTFIAGFPGETEEEFQTLLDFIAEAELD 338

Query: 361 QAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
           +   F YSP  G   +++   + + V+ ER     +             VG+ + VL+++
Sbjct: 339 RVGCFAYSPVEGATANDLPGALPDEVREERRARFMEVAERVSARGLQRKVGKSLRVLVDE 398

Query: 421 HGKEKGKLVGRS----PWLQSVVLNS------KNHNIGDIIKVRITDVKISTLYGEL 467
             ++ G  +GRS    P +  +V  +      K +  GD + V+IT      L+GE+
Sbjct: 399 VNQDGG--IGRSSADAPEIDGLVYIAPPSKPYKRYKAGDFVSVKITGADGHDLWGEV 453


>gi|170751706|ref|YP_001757966.1| MiaB-like tRNA modifying enzyme [Methylobacterium radiotolerans JCM
           2831]
 gi|170658228|gb|ACB27283.1| MiaB-like tRNA modifying enzyme [Methylobacterium radiotolerans JCM
           2831]
          Length = 408

 Score =  157 bits (397), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 129/412 (31%), Positives = 196/412 (47%), Gaps = 37/412 (8%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDA-DLIVLNTCHIREKAAEKVYSFLGRIRN 89
           ++GC++N  +S  +          RV++  D  D +V+NTC +  +A  +    + R+  
Sbjct: 7   TFGCRLNTVESEAL----------RVHAAADGRDRVVVNTCAVTAEAGRQARKAIRRL-- 54

Query: 90  LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149
              +R + G +  +VV GC A+ E  E     P V  +VG     R PE    A  G   
Sbjct: 55  ---ARERPGAE--IVVTGCGAEVE-TEAYAAMPEVARLVGNAEKLR-PEGWSAAATGPGA 107

Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209
           V    + E    R+  V  G+ R     AF+ +Q GCD  CTFCV+P+ RG+  S   + 
Sbjct: 108 VMAARAAEPT--RVEAV-AGHTR-----AFVPVQNGCDHRCTFCVIPFGRGVSRSVPEAD 159

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS-LSEIKGLVRLRYTTS 268
           V+ +   ++  G  E+ L G ++ A+ G+ L G   +   L  + L  +  L RLR ++ 
Sbjct: 160 VIAQVETIVARGGREVVLTGVDLTAY-GRDLPGTAPSLGGLARAILRAVPDLARLRLSSI 218

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
              +  D L+ A  + + LMP+LHL +Q+G D ILK M RRH   +  +  + +R +RPD
Sbjct: 219 DSVEADDALLAAIAEEERLMPHLHLSLQAGDDLILKRMRRRHLRADAIRFCETVRRLRPD 278

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
               +D I GFP ET+  F  ++DLV   G      F YSPR GTP + M   V      
Sbjct: 279 TVFGADLIAGFPTETEAQFDRSLDLVAACGLTHLHVFPYSPRPGTPAARM-PPVAPEAIR 337

Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440
            R   L+    +      DA VG+ + VL E+ G      VGRS    +V L
Sbjct: 338 ARAARLRAAGADALRRHLDAQVGRRLTVLAERGG------VGRSADFTAVRL 383


>gi|189347087|ref|YP_001943616.1| MiaB-like tRNA modifying enzyme YliG [Chlorobium limicola DSM 245]
 gi|238065321|sp|B3EDL2|RIMO_CHLL2 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|189341234|gb|ACD90637.1| MiaB-like tRNA modifying enzyme YliG [Chlorobium limicola DSM 245]
          Length = 429

 Score =  157 bits (396), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 127/452 (28%), Positives = 223/452 (49%), Gaps = 41/452 (9%)

Query: 28  FVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC-HIREKAAEKVYSFLGR 86
           F+ S GC  N  DS R+     + G       DDAD+I++NTC  I++   E +   L  
Sbjct: 5   FLLSLGCSKNTVDSERLMAQAAASGMIFTEFADDADIILINTCGFIQDAKEESIAETLAA 64

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           IR  ++ ++++     V V GC+ +   +E+    P ++   G +    LP++L      
Sbjct: 65  IRKKQDEKVRK-----VYVMGCLPELYRKELADEMPEIDGFFGTR---ELPDVL------ 110

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
            R +  +Y  E    R+ +    Y       AFL I EGC++ C+FC +P  RG  +S+ 
Sbjct: 111 -RAIGAEYREELLDRRILLTPPHY-------AFLKIAEGCNRQCSFCSIPKIRGRYVSQP 162

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
             Q++ EA  L  +GV E+ L+ Q+++ + G  LDG     +DL+  LS+++   R+R  
Sbjct: 163 PEQLLREAALLRQSGVRELNLIAQDISVY-GCDLDG-SSLLNDLVLRLSDME-FERIRLL 219

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
            ++P +    +I    + + +  YL +P+Q  SDRIL+SMNR   +    ++I+ IR   
Sbjct: 220 YAYPLNFPMEVIDTMRERENVCNYLDMPLQHISDRILRSMNRGIDSTGTVRLIESIRQRN 279

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           PDI + +  I G+PGET ++F   +  V +  + +   F YS    +P   + + V    
Sbjct: 280 PDIRLRTTMIAGYPGETGEEFEELLQFVAETRFDRLGCFPYSHEEHSPAYRLEDDVIPEK 339

Query: 387 KAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPW-----LQSV 438
           K +R   L+ LQ+ + +++   N    G  I VL+++   E+  + GR+ +         
Sbjct: 340 KQDRVAELMELQETISQEK---NREFEGNEIVVLVDQ--VEENMVFGRTEYDAPEVDNEC 394

Query: 439 VLNSKNHNI--GDIIKVRITDVKISTLYGELV 468
           +L + N ++  G   + RITD     L GE++
Sbjct: 395 ILETGNFDVRPGMFCRARITDSTPYDLEGEVI 426


>gi|289427177|ref|ZP_06428893.1| ribosomal protein S12 methylthiotransferase RimO [Propionibacterium
           acnes J165]
 gi|289159646|gb|EFD07834.1| ribosomal protein S12 methylthiotransferase RimO [Propionibacterium
           acnes J165]
          Length = 481

 Score =  157 bits (396), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 133/465 (28%), Positives = 208/465 (44%), Gaps = 56/465 (12%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N  DS  +     + G+  V+   +A+ +V+NTC   E+A +     L    +L
Sbjct: 14  SMGCARNDVDSEELAARMEAGGFRLVDDPAEAETVVVNTCGFIEQAKKDSVDTLLAAADL 73

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYY----RLPELLERARF- 145
           K + I       VV  GC+A+  G E+    P  + V+G   Y     RL  +L+     
Sbjct: 74  KGNGITTS----VVAVGCMAERYGRELAESLPEADAVLGFDDYGDIAGRLRTILDDGSLE 129

Query: 146 -----GKRVVDTDYSVEDKFERLSIVDGGY------------------NRKR---GVTAF 179
                 +R +     V+    R  +   G+                   R+R   G +A 
Sbjct: 130 THVPRDRRTLLPISPVDRPTARAEVSVPGHGTAPDLSASVTPDSGPRATRRRLGTGPSAP 189

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
           L +  GCD+ C FC +P  RG  +SR ++++V+EAR L+D+GV E+ L+ +N +++ GK 
Sbjct: 190 LKMASGCDRRCAFCAIPRFRGSYLSRPIAEIVEEARWLVDHGVKEVFLVSENSSSY-GKD 248

Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
           L G+      LL +L ++ GL  +R +   P ++   LI      D ++PY  L  Q  S
Sbjct: 249 L-GDLRLLEKLLVNLDQVDGLEWIRVSYLQPAELRPGLIDTILATDKVVPYFDLSFQHAS 307

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
             +L+ M R   A  +  IID IRS  P+  + S+FI GFPGETD D     D + +   
Sbjct: 308 GPLLRRMRRFGDAESFLNIIDSIRSCCPEAGLRSNFITGFPGETDADVAVLADFLQRARL 367

Query: 360 AQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419
             A  F YS   GT  + +   VDE+V   R        RE      D  V Q  E  I 
Sbjct: 368 DVAGVFAYSDEEGTEAAGLDGHVDEDVVTAR--------REDLADLTDELVSQRAEDRIG 419

Query: 420 KHGKE-----KGKLVGRS----PWLQSVV--LNSKNHNIGDIIKV 453
             G+         ++GR+    P +   V  +++   ++GDI+ V
Sbjct: 420 TRGRVMVEEIDEAVIGRAEHQGPEVDGCVTLVDAAAVSVGDIVDV 464


>gi|256370700|ref|YP_003108525.1| putative MiaB-like protein [Candidatus Sulcia muelleri SMDSEM]
 gi|256009492|gb|ACU52852.1| putative MiaB-like protein [Candidatus Sulcia muelleri SMDSEM]
          Length = 435

 Score =  157 bits (396), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 101/375 (26%), Positives = 194/375 (51%), Gaps = 16/375 (4%)

Query: 33  GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92
           GC++N  ++  + + F  +GYE V  +  AD+ ++NTC +   A +K       ++ L  
Sbjct: 12  GCKLNFTETDTIINKFLIKGYEYVKYISFADIYIINTCSVTNNAEKK-------LKKLVK 64

Query: 93  SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDT 152
             +K   +  +V  GC +Q   ++I   + I ++++G +  +++   LE     K+    
Sbjct: 65  IALKNNVNAFIVAIGCYSQVNPKKISLINGI-DLIIGAKKKFKIINYLENLS-KKKTAKI 122

Query: 153 DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVD 212
            YS     ++  +    Y++     +FL IQ+GCD  C++C +P  RG   S  ++ ++ 
Sbjct: 123 YYS---DIKKSDLYFPSYSKLNRTRSFLKIQDGCDYKCSYCTIPKARGTSKSDDITNIIK 179

Query: 213 EARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI--KGLVRLRYTTSHP 270
            A+ +I  G+ EI L G N+  + GK L   K  F +L+ ++     K ++R+R ++  P
Sbjct: 180 YAKNVIKKGIKEIVLTGVNIGDF-GKNLK-PKSNFLELMKAMDSFFYKKIIRIRISSIEP 237

Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330
             ++D LI       + + + H+P+QSGSD IL  M RR+++  + + I +I+++ P+  
Sbjct: 238 NLLNDDLINFILKSKIFVHHFHIPLQSGSDEILNKMKRRYSSNFFEKKIIQIKNLMPNAC 297

Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER 390
           I SD IVGFPGE + +F  T   + K+  +    F YS R+ T   +M   + + ++ +R
Sbjct: 298 IGSDVIVGFPGEQEKNFIETYLFLSKLDISYFHVFSYSERINTEAISMKNSIPQKIRYKR 357

Query: 391 LLCLQKKLREQQVSF 405
              L+   + ++ +F
Sbjct: 358 SKILRILSKRKKYNF 372


>gi|170028512|ref|XP_001842139.1| aq_284 [Culex quinquefasciatus]
 gi|167876261|gb|EDS39644.1| aq_284 [Culex quinquefasciatus]
          Length = 555

 Score =  157 bits (396), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 128/470 (27%), Positives = 211/470 (44%), Gaps = 53/470 (11%)

Query: 20  QCIVP--QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA 77
           + ++P  QR ++K++GC  N  DS  M     S GY       DA+L +LN+C ++  + 
Sbjct: 60  ESVIPGTQRIYLKTWGCAHNSSDSEYMAGQLASYGYNITTDKTDANLWLLNSCTVKNPSE 119

Query: 78  EKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGE-EILRRSPIVNVVVGPQTYYRL 136
           +         RN   +  K G    VV+AGCV QA  + E +    IV V    Q   R+
Sbjct: 120 DT-------FRNEILAAEKMGKH--VVLAGCVPQAAPKSEYMHGLSIVGV----QQLDRV 166

Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVDG----GYN------RKRGVTAFLTIQEGC 186
            E++E    G  V         +  +   V+G    G N      RK  +   + I  GC
Sbjct: 167 TEVVEETLKGHSV---------RLLQPKKVNGKKVAGPNLALPKVRKNPLIEIIPINSGC 217

Query: 187 DKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT 246
              CT+C   + R   IS  + ++++ A ++   GVCEI L  ++   + G+ +     +
Sbjct: 218 LNTCTYCKTKFARADLISYPVEEIIERATQVFQEGVCEIWLTSEDTGTY-GRDIGS---S 273

Query: 247 FSDLLYSLSEI--------KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
             +LL+ L E+         G+    Y   H  +M+  L  AH  +     +LH+PVQSG
Sbjct: 274 LPELLWKLVEVIPDNCRLRLGMTNPPYILEHLDEMAKIL--AHPKV---YGFLHVPVQSG 328

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           SD +L  M R +   ++ +I D ++   P I I++D I GFP ET+ DF  TM L  K  
Sbjct: 329 SDSVLGEMKREYCRADFERICDFLKQKVPGITIATDIICGFPTETEADFEHTMSLCAKYE 388

Query: 359 YAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI 418
           +   F  ++ PR GTP + M     + VK  R   L       +       +G    VL+
Sbjct: 389 FPSLFINQFYPRPGTPAAKMQRIPPDQVKT-RTKRLTDLFYGYEPYAKKYTIGDRQTVLV 447

Query: 419 EKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            +   +K   VG + + + ++L      +G +++VRI  +   ++  E+ 
Sbjct: 448 TEISHDKKHYVGHNKFYEQILLPMDKPLLGKLVEVRIAKITKFSMIAEIA 497


>gi|241663178|ref|YP_002981538.1| ribosomal protein S12 methylthiotransferase [Ralstonia pickettii
           12D]
 gi|240865205|gb|ACS62866.1| MiaB-like tRNA modifying enzyme YliG [Ralstonia pickettii 12D]
          Length = 453

 Score =  157 bits (396), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 135/477 (28%), Positives = 224/477 (46%), Gaps = 65/477 (13%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  FV S GC   + DS ++     ++GYE   +   ADL+V+NTC   ++A ++    
Sbjct: 9   PKVGFV-SLGCPKALVDSEQIITQLRAEGYEISGTYGGADLVVVNTCGFIDEAVQESLDA 67

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQ---AEGEEILRR-SPIVNVVVGPQTYYRLPEL 139
           +G         + E G   V+V GC+     A G++I+    P V  V GP   + L E+
Sbjct: 68  IGEA-------LAENGK--VIVTGCLGAKKDAAGQDIITSVHPKVLAVTGP---HALGEV 115

Query: 140 LERARFGKRVVDTDYS-VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
           +E        V T      D F  L +   G        A+L I EGC+  C+FC++P  
Sbjct: 116 ME-------AVHTHLPKPHDPFIDL-VPPQGIKLTPKHYAYLKISEGCNHRCSFCIIPSM 167

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTF 247
           RG  +SR +++V+ EA  L+  GV E+ ++ Q+ +A           W G+ L   K   
Sbjct: 168 RGDLVSRPVAEVMLEAENLLKAGVKELLVISQDTSAYGVDVKFRMGFWNGRPL---KTRM 224

Query: 248 SDLLYSLSEIKG----LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
           ++L+ +L E+       VRL Y   +P       + A G +   +PYL +P+Q     +L
Sbjct: 225 TELVGALGELAAQYGAWVRLHYVYPYPSVDEVMPLMAEGKV---LPYLDVPLQHAHPDVL 281

Query: 304 KSMNRRHTAYEYRQIIDRIRSVR---PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
           K M R   A    + +DRIR+ R   P++ I S FI GFPGET+++F+  +D + +    
Sbjct: 282 KRMKRPANA---EKTLDRIRAWREVCPELTIRSTFIAGFPGETEEEFQTLLDFIAEAELD 338

Query: 361 QAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
           +   F YSP  G   +++   + + V+ ER     +             VG+ + VL+++
Sbjct: 339 RVGCFAYSPVEGATANDLPGALPDEVREERRARFMEVAERVSARRLQRKVGKSLRVLVDE 398

Query: 421 HGKEKGKLVGRS----PWLQSVVLNS------KNHNIGDIIKVRITDVKISTLYGEL 467
             ++ G  +GRS    P +  +V  +      K +  GD + V+IT      L+GE+
Sbjct: 399 VNQDGG--IGRSSADAPEIDGLVYIAPPSKPYKRYKAGDFVSVKITGADGHDLWGEV 453


>gi|218961820|ref|YP_001741595.1| putative MiaB-like tRNA modifying enzyme [Candidatus Cloacamonas
           acidaminovorans]
 gi|167730477|emb|CAO81389.1| putative MiaB-like tRNA modifying enzyme [Candidatus Cloacamonas
           acidaminovorans]
          Length = 422

 Score =  157 bits (396), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 122/438 (27%), Positives = 206/438 (47%), Gaps = 27/438 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R  + + GC+ N  +S  + D F    ++ V   ++AD+ ++NTC +  +   K    + 
Sbjct: 3   RIAIATLGCKANQAESSIILDQF--NDFKLVPWQEEADIYIINTCTVTNRTDYKSRYLIR 60

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           +  + K     +     +VV GC AQ   EEI +    V+ ++  Q    + ++L    +
Sbjct: 61  QALSQKT----QNPFAKIVVTGCFAQRYPEEIAKMGN-VDWIIDNQQKLNIADILAGGNY 115

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
               +D   + E  ++  + +   YNR R   AF  IQ+GCD  C +C VPY RG   S 
Sbjct: 116 --EFMDIMQAKEFVYKPTAKM---YNRTR---AFQIIQDGCDFNCAYCAVPYGRGRSRSA 167

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           +L QV+ +A+  ++NG  EI L G N+  ++    D      +D+L  L+E++GL  +R 
Sbjct: 168 TLEQVIQQAKLFVENGYKEIVLSGINLGLYKDGNND-----LTDVLLRLNELQGLELIRL 222

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
           ++  P+  +D LI     +  L  + H+P+Q G+D  LK M R +T+    Q+I +I   
Sbjct: 223 SSVEPQLFNDKLINTLPLIPKLCSHYHIPLQCGADSGLKRMRRHYTSTTINQLIVKICER 282

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P  AI  D I GFPGET+++   T + +  +  A    F +S R GTP  +   Q+ + 
Sbjct: 283 IPYPAIGMDVITGFPGETEEEHNQTCEFLRSLPLAYLHIFTFSKRKGTPAFDFPNQISKT 342

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN---S 442
           +K  R   L +  RE       A    ++E  I   G  +    G   +L    +    S
Sbjct: 343 IKNRRANELSQISRE----LTSAYTKSLMENNIPLRGIVEKNTAGYCEFLSDHYVRVRFS 398

Query: 443 KNHNIGDIIKVRITDVKI 460
            N   GD ++V   + +I
Sbjct: 399 GNFQPGDFVQVPSQEAQI 416


>gi|309782622|ref|ZP_07677344.1| Fe-S oxidoreductase family 1 [Ralstonia sp. 5_7_47FAA]
 gi|308918597|gb|EFP64272.1| Fe-S oxidoreductase family 1 [Ralstonia sp. 5_7_47FAA]
          Length = 453

 Score =  157 bits (396), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 135/477 (28%), Positives = 224/477 (46%), Gaps = 65/477 (13%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  FV S GC   + DS ++     ++GYE   +   ADL+V+NTC   ++A ++    
Sbjct: 9   PKVGFV-SLGCPKALVDSEQIITQLRAEGYEISGTYGGADLVVVNTCGFIDEAVQESLDA 67

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQ---AEGEEILRR-SPIVNVVVGPQTYYRLPEL 139
           +G         + E G   V+V GC+     A G++I+    P V  V GP   + L E+
Sbjct: 68  IGEA-------LAENGK--VIVTGCLGAKKDAAGQDIITSVHPKVLAVTGP---HALGEV 115

Query: 140 LERARFGKRVVDTDYS-VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
           +E        V T      D F  L +   G        A+L I EGC+  C+FC++P  
Sbjct: 116 ME-------AVHTHLPKPHDPFIDL-VPPQGIKLTPKHYAYLKISEGCNHRCSFCIIPSM 167

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTF 247
           RG  +SR +++V+ EA  L+  GV E+ ++ Q+ +A           W G+ L   K   
Sbjct: 168 RGDLVSRPVAEVMLEAENLLKAGVKELLVISQDTSAYGVDVKFRMGFWNGRPL---KTRM 224

Query: 248 SDLLYSLSEIK----GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
           ++L+ +L E+       VRL Y   +P       + A G +   +PYL +P+Q     +L
Sbjct: 225 TELVGALGELASQYGAWVRLHYVYPYPSVDEVMPLMAEGKV---LPYLDVPLQHAHPDVL 281

Query: 304 KSMNRRHTAYEYRQIIDRIRSVR---PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
           K M R   A    + +DRIR+ R   P++ I S FI GFPGET+++F+  +D + +    
Sbjct: 282 KRMKRPANA---EKTLDRIRAWREVCPELTIRSTFIAGFPGETEEEFQTLLDFIAEAELD 338

Query: 361 QAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
           +   F YSP  G   +++   + + V+ ER     +             VG+ + VL+++
Sbjct: 339 RVGCFAYSPVEGATANDLPGALPDEVREERRARFMEVAERVSARRLQRKVGKSLRVLVDE 398

Query: 421 HGKEKGKLVGRS----PWLQSVVLNS------KNHNIGDIIKVRITDVKISTLYGEL 467
             ++ G  +GRS    P +  +V  +      K +  GD + V+IT      L+GE+
Sbjct: 399 VNQDGG--IGRSSADAPEIDGLVYIAPPSKPYKRYKAGDFVSVKITGADGHDLWGEV 453


>gi|303232268|ref|ZP_07318967.1| MiaB-like protein [Atopobium vaginae PB189-T1-4]
 gi|302481678|gb|EFL44739.1| MiaB-like protein [Atopobium vaginae PB189-T1-4]
          Length = 449

 Score =  157 bits (396), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 114/412 (27%), Positives = 189/412 (45%), Gaps = 38/412 (9%)

Query: 20  QCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYER----VNSMDDADLIVLNTCHIREK 75
           Q   P +    + GC++N     R+E    +   ER    V    +AD I++NTC +  +
Sbjct: 27  QSARPPKVAFINLGCRVN-----RVETDVIASELERAGCEVVPQTEADAIIINTCAVTSE 81

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135
           A  K    + R   L ++         VV  GCVA    +EI   +  VNV V       
Sbjct: 82  AEAKTRKVVRRAAKLAHTP-------FVVATGCVASLHADEISSIAENVNVQVN------ 128

Query: 136 LPELLERARFGKRVVD----TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCT 191
                 +A+    V++       SV+D    +S        + G+     +Q+GC+  C+
Sbjct: 129 ------KAQVASCVLNEFGCIAGSVDDSGNLISTPTPTGRTRPGIK----VQDGCNNRCS 178

Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLL 251
           FC+V   RG   S  + +++ + R    +G  E+ L G N+  +R +   G +     LL
Sbjct: 179 FCIVWKARGPACSADVDEIISQVRATQAHGAHEVVLTGINLGDYRYE-YKGSRLRLPGLL 237

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKA-HGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
             + +   + R+R ++  P D++D L+    G    +  +LH+ +QSG D  L+ M R +
Sbjct: 238 SEIMKQTSIERIRLSSIEPPDITDELLDVIAGSEGRIAQFLHICLQSGCDATLRRMKRNY 297

Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370
           T   YR  ++R R   P +A+ +D IVGFPGETDD+F  +      IG+A+   F+YS R
Sbjct: 298 TTAFYRSAVERARDRMPHVALGTDLIVGFPGETDDEFATSYKFCKDIGFAKMHIFRYSKR 357

Query: 371 LGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422
            GTP +    QVD +V A R   + +   + + +     VG    V+++  G
Sbjct: 358 SGTPAATAEGQVDPHVMAARSRTMHELAAQMRYTQAQKLVGMRDSVVVQTAG 409


>gi|302335746|ref|YP_003800953.1| SSU ribosomal protein S12P methylthiotransferase [Olsenella uli DSM
           7084]
 gi|301319586|gb|ADK68073.1| SSU ribosomal protein S12P methylthiotransferase [Olsenella uli DSM
           7084]
          Length = 456

 Score =  157 bits (396), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 128/452 (28%), Positives = 214/452 (47%), Gaps = 34/452 (7%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA-AEKVYSFLGRIRN 89
           + GC  N  D+ RM  +  + G++ V  +DDAD++++NTC     A +E + + L    +
Sbjct: 22  TLGCAKNEVDTDRMRALLINAGFDEVRDVDDADVVIINTCSFLASATSESIEATLELADD 81

Query: 90  LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149
           +     +      +V+ GCV    G E+  + P V   V       +  ++ R   G  +
Sbjct: 82  VSEGVRRR----PIVMCGCVPSRYGAELAAQLPEVAAFVRADEEDGIVAVV-RDVLG--M 134

Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209
               +S E     L  V+G        +A++ I EGCD+FC FC +P  RG   SR   +
Sbjct: 135 GGASFSNEATSRALRTVEG-------ASAYVKISEGCDRFCAFCAIPRIRGRYASRPEGE 187

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR-----LR 264
           ++ E  +L++ G  E+ L+GQ+   W G  L G +     L + L E+   VR     +R
Sbjct: 188 ILSEVERLMEGGAREVVLIGQDTGIW-GSDLGGGRT----LAWLLREVAAAVRPYGAWVR 242

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
                P  M+D LI    D + ++ Y+ +P+Q   +R+L SM R  +    R + DR+RS
Sbjct: 243 VLYLQPEGMTDELIATIRDTEEVLSYIDIPIQHCDERVLASMGRTGSIDRLRALFDRLRS 302

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             P + + +  +VGFPGETDD     +D   +  +     F YS   GT  + M  QV E
Sbjct: 303 EIPGMVLRTTGMVGFPGETDDQADELLDFFREQEFDYMSVFSYSREEGTKAARMDGQVPE 362

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE--KHGKEKGKLVGRSPWLQ------ 436
           +VK +R   L     +   +     VG++++V+I+  +   +  +LVG + W Q      
Sbjct: 363 DVKLDRTQRLLDVAEQLGFAATARHVGEVVDVIIDGVEDAGDGPELVGHA-WFQAPDCDG 421

Query: 437 SVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           +V + S    +G+ + VR+ D     L GE+V
Sbjct: 422 AVHIASGEATVGERVCVRLVDSFCYELVGEMV 453


>gi|194289474|ref|YP_002005381.1| ribosomal protein s12 methylthiotransferase [Cupriavidus
           taiwanensis LMG 19424]
 gi|238065328|sp|B3R4X7|RIMO_CUPTR RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|193223309|emb|CAQ69314.1| putative 2-methylthioadenine synthetase [Cupriavidus taiwanensis
           LMG 19424]
          Length = 470

 Score =  157 bits (396), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 137/477 (28%), Positives = 222/477 (46%), Gaps = 65/477 (13%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  FV S GC   + DS ++     ++GY    + D ADL+V+NTC   ++A ++    
Sbjct: 26  PRVGFV-SLGCPKALVDSEQIITQLRAEGYAISGTYDGADLVVVNTCGFIDEAVQESLDA 84

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQ---AEGEEILRR-SPIVNVVVGPQTYYRLPEL 139
           +G         + E G   V+V GC+     A G +I+    P V  V GP   + L E+
Sbjct: 85  IGEA-------LTENGK--VIVTGCLGAKKDAAGHDIVSSVHPKVLAVTGP---HALGEV 132

Query: 140 LERARFGKRVVDTDYS-VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
           ++        V T      D F  L +   G        A+L I EGC+  C+FC++P  
Sbjct: 133 MQ-------AVHTHLPKPHDPFTDL-VPAAGIKLTPKHYAYLKISEGCNHRCSFCIIPSM 184

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTF 247
           RG  +SR +++V+ EA  L   GV E+ ++ Q+ +A           W G+ L   K   
Sbjct: 185 RGDLVSRPVAEVMLEAENLFKAGVKELLVISQDTSAYGVDVKYRTGFWNGRPL---KTRM 241

Query: 248 SDLLYSLSEIKG----LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
           ++L+ +L E+       VRL Y   +P    D +I    +  VL PYL +P+Q     +L
Sbjct: 242 TELVAALGELAAQYGAWVRLHYVYPYPH--VDEIIPLMNNGHVL-PYLDVPLQHAHPDVL 298

Query: 304 KSMNRRHTAYEYRQIIDRIRSVR---PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
           K M R   A    + +DRIR+ R   P++ I S FI GFPGET+ +F+  +D + +    
Sbjct: 299 KRMKRPANA---EKTMDRIRAWREICPELTIRSTFIAGFPGETEAEFQTLLDFIAEAELD 355

Query: 361 QAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
           +   F YSP  G   +++   + + V+ ER     +             VGQ + VL+++
Sbjct: 356 RVGCFAYSPVEGATANDLPGALPDEVREERRARFMEVAEAVSARRLQRKVGQTLRVLVDE 415

Query: 421 HGKEKGKLVGRS----PWLQSVVL------NSKNHNIGDIIKVRITDVKISTLYGEL 467
             ++ G  +GRS    P +  +V        S+ +  G+ + VRIT      L+GE+
Sbjct: 416 VNQDGG--IGRSSADAPEIDGLVYIAPPQRTSQRYRAGEFVDVRITGADGHDLWGEV 470


>gi|258648341|ref|ZP_05735810.1| RNA modification enzyme, MiaB family [Prevotella tannerae ATCC
           51259]
 gi|260851506|gb|EEX71375.1| RNA modification enzyme, MiaB family [Prevotella tannerae ATCC
           51259]
          Length = 431

 Score =  157 bits (396), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 126/443 (28%), Positives = 211/443 (47%), Gaps = 36/443 (8%)

Query: 33  GCQMNVYDSLRMEDMFFSQGYERVNSMDDAD--LIVLNTCHIREKAAEKVYSFLGRIRNL 90
           GC  N+ DS R+   F + G+   ++ +     + V+NTC     A E+  + +     L
Sbjct: 9   GCSKNLVDSERLLHQFEAHGFTTYHNPEQTHGGIAVVNTCGFIAAAKEESINVI-----L 63

Query: 91  KNSRIKEGGDL-LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149
           +  + KE G+L  V V GC+++    E+    P V+   G   + +L + L + R+  R 
Sbjct: 64  ELCQQKEAGNLKQVYVMGCLSERYMSELQEEIPQVDKFYGKFDWDQLLKGLSQ-RYDFRS 122

Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209
            +         ER       Y       A+L I EGCD+ C +C +P   G  ISR +  
Sbjct: 123 AN---------ERQITTPPHY-------AYLKIAEGCDRKCAYCAIPLITGKHISRPIED 166

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSH 269
           ++ E R L++ GV E  ++ Q +  + G  L  ++C  ++L+  ++E  G+  +R   ++
Sbjct: 167 ILAEVRTLVNQGVKEFQIIEQEL-TYYGVDLYHKQC-IAELVEKIAETPGVEWVRLHYAY 224

Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329
           P    D L++     D +  YL + +Q  SD +L+ M+R  T  E   +I ++R   PDI
Sbjct: 225 PNQFPDSLLEVISKHDNICNYLDIALQHISDNVLQRMHRHVTKQETIDLIRKMREKVPDI 284

Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML-EQVDENVKA 388
            I +  ++GFPGETD+DF   +  V +  + +  +F YS   GT  +N   + V E+VK 
Sbjct: 285 CIRTTLLLGFPGETDEDFEELLQFVKETRFNRLGAFVYSEEEGTYAANHYKDDVPESVKQ 344

Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVVLNSKN 444
           ERL  L +  R      N   +G +++ +I+K  +E    +GR    SP +   V  +K 
Sbjct: 345 ERLDRLMELQRGISEELNQELIGSVLKTIIDK--QEGDYYIGRTAYDSPEVDGEVYINKA 402

Query: 445 HN--IGDIIKVRITDVKISTLYG 465
            N  +G    V I D     LYG
Sbjct: 403 ENLQVGKFYDVLIQDATDYDLYG 425


>gi|57239481|ref|YP_180617.1| hypothetical protein Erum7550 [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58579459|ref|YP_197671.1| hypothetical protein ERWE_CDS_07950 [Ehrlichia ruminantium str.
           Welgevonden]
 gi|57161560|emb|CAH58487.1| conserved hypothetical protein [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58418085|emb|CAI27289.1| Conserved hypothetical protein [Ehrlichia ruminantium str.
           Welgevonden]
          Length = 413

 Score =  157 bits (396), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 118/452 (26%), Positives = 215/452 (47%), Gaps = 56/452 (12%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V ++GC++N Y+S  +++         +   +  D+IV++TC +  +A  +V +   +IR
Sbjct: 4   VITFGCRLNFYESEVIKN--------NLKKAELDDVIVVHTCAVTSEAERQVKA---KIR 52

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
            L N+      ++ ++VAGC AQ                + P++Y  +P +++      +
Sbjct: 53  KLYNN----NANVKIIVAGCAAQ----------------LNPESYMSMPGVVKVLGNEDK 92

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVT------------AFLTIQEGCDKFCTFCVVP 196
           +    Y   DK     ++ G     R V             A + IQ GC+  CTFCV+ 
Sbjct: 93  LKYESYITADK-----VIVGNIGSSRKVIKDSIKQFPGKSRALIEIQNGCNHECTFCVIT 147

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256
             RG   S  +  ++ + +  ++NG  E+   G +++ + G  + G++     +   L  
Sbjct: 148 KARGNNRSLHIEDIITQVKDCVNNGYNEVVFTGVDISDF-GIDIYGQRMLGVMIKRVLGA 206

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           I  L RLR ++    ++ D LI   G+    MP+LHL +QSG++ ILK M RRH   +  
Sbjct: 207 IPQLRRLRLSSIDVAEIEDDLIDIIGNEPRFMPHLHLSLQSGNNLILKRMKRRHNREQVV 266

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
           +  +R+  +R DI   +D IVGFP ET+D F  T+ L+++   +    F YS R GTP +
Sbjct: 267 EFCNRVSGMRKDIVFGADIIVGFPTETEDMFNDTVKLIEEANISYLHIFPYSAREGTPAA 326

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQ 436
            M  QV   V+  R   L +   ++  SF +  +     +++EK G      +GR+    
Sbjct: 327 RM-PQVSPEVRKRRTKYLWEISEKRLKSFYNTLLHTRQSIVVEKSG------IGRAENFA 379

Query: 437 SVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            V   S++  +  +++V +  V+ + L  E++
Sbjct: 380 LVKFFSQDVQLQSVVEVMVKAVEGNYLIAEVL 411


>gi|42528109|ref|NP_973207.1| putative tRNA modifying protein [Treponema denticola ATCC 35405]
 gi|81570119|sp|Q73JG6|RIMO_TREDE RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|41819154|gb|AAS13126.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Treponema
           denticola ATCC 35405]
          Length = 467

 Score =  157 bits (396), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 130/455 (28%), Positives = 212/455 (46%), Gaps = 55/455 (12%)

Query: 32  YGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLK 91
           +GC  N  D+  +  +  +  ++  +  D+ADLI++N+C     A E+    +  +   K
Sbjct: 4   HGCAKNQVDAELIIGIMENLSWKNTSDPDEADLIIVNSCGFINSAKEES---INAVLQAK 60

Query: 92  NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVD 151
            +  K      V++AGC+A+   + +    P  + + G      LP+L++ + F K+  D
Sbjct: 61  AAHPKAK----VLLAGCLAERYADILKNDLPEADGIFGNGNLSLLPQLID-SMFPKKTSD 115

Query: 152 TDYSVEDKFERLSIVDGGYNRKRGV----TAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
             + +E       I   G  R + +    + ++ I EGCD FC+FC +P  RG   SR +
Sbjct: 116 EKF-IEKTLVPPQIGICGGERPKILNFPRSTYIKITEGCDNFCSFCAIPIIRGRLRSRPI 174

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWR-GKG------LDGEKCT-FSDLLYSLSEIKG 259
             + DE +  +     E  L+GQ++ A++ GK       L  E C+  + LL S+S+IKG
Sbjct: 175 KDICDEIKTFLKKSFYEFNLIGQDLAAYQTGKDDLSEDELHRENCSGLALLLKSISKIKG 234

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVL---------MPYLHLPVQSGSDRILKSMNRRH 310
             ++R    HP          H  LD+L         +PY  +P QSG+ +I+++MNR  
Sbjct: 235 NFKIRLLYIHPD---------HFPLDILPIMTADKRFLPYFDIPFQSGAQKIIRAMNRNG 285

Query: 311 TAYEYRQIIDRIR-------SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
            A  Y  II  IR       S   +  I + F+VGFPGETD+DF  T+  + ++    + 
Sbjct: 286 AAEVYLDIIKNIREAFEKTNSPYGEPQIRTTFLVGFPGETDEDFNETIKFLKELRPLWSG 345

Query: 364 SFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK--H 421
            F YS    TP  +   +V +     RL  +Q           D+ +G+ IEVL+E+   
Sbjct: 346 GFTYSREEDTPSYSFKGKVPKKTAEARLAEIQNAQTSITEKKLDSFIGKEIEVLVEELIQ 405

Query: 422 GKEKGKLVGRSPWLQ------SVVLNSKNHNIGDI 450
            ++K  L     W Q      +VVLN  N N  DI
Sbjct: 406 AEDKTFLALGRAWFQAPEVDGAVVLNF-NLNKKDI 439


>gi|212224708|ref|YP_002307944.1| Hypothetical 2-methylthioadenine synthetase [Thermococcus
           onnurineus NA1]
 gi|212009665|gb|ACJ17047.1| Hypothetical 2-methylthioadenine synthetase [Thermococcus
           onnurineus NA1]
          Length = 425

 Score =  157 bits (396), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 119/398 (29%), Positives = 199/398 (50%), Gaps = 28/398 (7%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +  V++YGC  N  D+  ME +    GYE V + + AD +V+NTC +++   + +     
Sbjct: 3   KVHVETYGCTRNKADAEIMEAILLRAGYELVETPESADYVVVNTCAVKDPTEKHMRE--- 59

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           RI+ L +S  +      V+V GC+     + I    P V+ ++G ++  R+ E ++ A  
Sbjct: 60  RIKELLDSGKR------VIVTGCLTHVNPDII---DPRVSGILGVKSIDRIAEAIDLAER 110

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNR--KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             ++V  +   E   ++L     G  R  + GV   + I EGC   CT+C   + RG+  
Sbjct: 111 DGKLVSVEGWRERSLDKL-----GLPRLWRSGVAFVVPISEGCLNACTYCATRFARGVLK 165

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           S     VV   ++ +  G  EI L  ++   +   G D      ++LL  ++ I+G  R+
Sbjct: 166 SYKPELVVKWVKEALARGYREIQLSSEDTGCY---GFD-IGTNLAELLDEITSIEGEFRI 221

Query: 264 R---YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
           R      +H     D LI+A+ D  V   +LHLPVQSG + +L+ M R +T  E+ +I++
Sbjct: 222 RVGMMNPNHAIKFLDELIEAYQDEKVYK-FLHLPVQSGDNEVLRRMGRTYTVEEFEEIVN 280

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
             R   P + +++D IVGFPGET++ F+ T++LV ++   +    +YSPR GT  +   +
Sbjct: 281 EFRRKIPGLNLNTDIIVGFPGETEEAFQNTVELVKRVRPDKINVSRYSPRPGTIAAKWKQ 340

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI 418
                VK ER   L +   +     N   VG+ IEVLI
Sbjct: 341 LPGWKVK-ERSRLLHRLRLQIAYEINQNYVGREIEVLI 377


>gi|307253302|ref|ZP_07535175.1| Ribosomal protein S12 methylthiotransferase rimO [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306859214|gb|EFM91254.1| Ribosomal protein S12 methylthiotransferase rimO [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
          Length = 345

 Score =  157 bits (396), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 105/358 (29%), Positives = 173/358 (48%), Gaps = 40/358 (11%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ DS R+     + GY  + S ++ADL+++NTC   + A ++    +G     
Sbjct: 11  SLGCPKNLVDSERILTELRTDGYNIIPSYENADLVIVNTCGFIDSAVQESLEAIGE---- 66

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               ++E G   V+V GC+   E + I    P V  + GP +Y  +  +    ++  R  
Sbjct: 67  ---ALEENGK--VIVTGCLGAKENQ-IREVHPKVLEITGPHSYEAV--MKHVHKYVPRPE 118

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
              Y+     + + +    Y       A+L I EGCD  CTFC++P  RG   SR + QV
Sbjct: 119 RNIYTSLVPAQGVKLTPKHY-------AYLKISEGCDHRCTFCIIPSMRGDLDSRPIVQV 171

Query: 211 VDEARKLIDNGVCEITLLGQNVNA---------------WRGKGLDGEKCTFSDLLYSLS 255
           +DEA++L D+GV E+ ++ Q+ +A               W G  +     T  + L +L 
Sbjct: 172 LDEAKRLADSGVKELLIVSQDTSAYALDQSKENQNKTVFWNGVPIKNNLITLCEQLGTLG 231

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
                VRL Y   +P       + A G +   +PYL +P+Q  S ++LK+M R       
Sbjct: 232 I---WVRLHYVYPYPHVDDLIPLMAQGKI---LPYLDIPLQHASPKVLKAMKRPGAIDRT 285

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
            + I + R + P++ + S FIVGFPGET++DF+  +D +++    +   FK+SP  G 
Sbjct: 286 LERIKKWREICPELTLRSTFIVGFPGETEEDFQMLLDFLEEAQLDRVGCFKFSPVEGA 343


>gi|300727098|ref|ZP_07060517.1| conserved hypothetical protein [Prevotella bryantii B14]
 gi|299775642|gb|EFI72233.1| conserved hypothetical protein [Prevotella bryantii B14]
          Length = 459

 Score =  157 bits (396), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 130/450 (28%), Positives = 202/450 (44%), Gaps = 47/450 (10%)

Query: 33  GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92
           GC++N  ++     M    G       + AD+ ++NTC + E A  K    + R+     
Sbjct: 18  GCKLNFSETSTFGKMLQDMGVHAAKKGEKADICIINTCSVTEMADHKCRQQIHRM----- 72

Query: 93  SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVD- 151
             ++E     VVV GC AQ E E++ +    V++V+G      L + L  A  G+   D 
Sbjct: 73  --VRENPGSFVVVTGCYAQLESEKVSKIDG-VDLVLGSNEKANLIQYLNDAFTGQLTSDM 129

Query: 152 -------TD-------YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197
                  TD       +SV  K   +       +R      FL +Q+GC+ FCT+C +PY
Sbjct: 130 SVNRSESTDTEHLHSYHSVRTK--DIKTFQPSCSRGNRTRYFLKVQDGCNYFCTYCTIPY 187

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC--TFSDLLYSLS 255
            RG   + S+  +V +A +  + G  EI L G N+  +      GE    +F DL+ +L 
Sbjct: 188 ARGFSRNPSIVSLVKQAEEAAEEGGKEIVLTGVNIGDF------GETTNESFLDLVKALD 241

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
           +++G+ R R ++  P    D LI+        MP+ H+P+QSGSD +LK M+RR+ +  +
Sbjct: 242 QVQGIQRFRISSLEPDLCDDELIEYCSTSRAFMPHFHIPLQSGSDEVLKLMHRRYDSALF 301

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
              I  I+   PD  I  D +VG  GE  + F      ++ +   Q   F YS R GT  
Sbjct: 302 AHKIKLIKKFMPDAFIGVDVMVGCRGEKPEYFEECYRFLESLPVTQLHVFPYSERPGTSA 361

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-------HGKEKGKL 428
            ++   VD+  K  R+  L     ++   F    +G   EVL EK       HG  K  +
Sbjct: 362 LSIPYVVDDKEKKRRVKELLALSDKKTQDFYSNYIGTEAEVLFEKSAVGKAMHGFTKNYI 421

Query: 429 -VGRSPWLQSVVLNSKNHNIGDIIKVRITD 457
            V  SP L      +K      +IKVR+ D
Sbjct: 422 RVELSPAL------AKEDFDNQLIKVRLGD 445


>gi|291436894|ref|ZP_06576284.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
 gi|291339789|gb|EFE66745.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
          Length = 491

 Score =  157 bits (396), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 131/438 (29%), Positives = 197/438 (44%), Gaps = 41/438 (9%)

Query: 23  VPQRFFVK--SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKV 80
           +P+R  V   + GC  N  DS  +     + G+  V    +AD+ V+NTC   E A +  
Sbjct: 1   MPERRTVALVTLGCARNEVDSEELAGRLEADGWRLVEDAAEADVAVVNTCGFVEAAKKDS 60

Query: 81  YSFLGRIRNLKNSRIKEGGDLLVVVA-GCVAQAEGEEILRRSPIVNVVVGPQTYY----R 135
              L     L+ + +KE G    VVA GC+A+  G+E+    P  + V+G   Y     R
Sbjct: 61  VDAL-----LEANDLKEHGRTQAVVAVGCMAERYGKELAEALPEADGVLGFDDYTDISDR 115

Query: 136 LPELL----------------------ERARFGKRVVDTDYSVEDKFERLSIVDGGYN-- 171
           L  +L                      ER   G  V    +   D  E L+   G     
Sbjct: 116 LQTILSGGIHASHTPRDRRKLLPLSPVERQAAGASVALPGHGPADLPEGLAPASGPRAPL 175

Query: 172 RKR---GVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLL 228
           R+R      A + +  GCD+ C+FC +P  RG  ISR  S V++E R L + GV EI L+
Sbjct: 176 RRRLDGSPVASVKLASGCDRRCSFCAIPSFRGSFISRRPSDVLNETRWLAEQGVKEIMLV 235

Query: 229 GQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLM 288
            +N N   GK L G+      LL  L+E+ GL R+R +   P +M   LI        + 
Sbjct: 236 SEN-NTSYGKDL-GDIRLLESLLPELAEVDGLERVRVSYLQPAEMRPGLIDVLTSTPKVA 293

Query: 289 PYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFR 348
           PY  L  Q  +  +L++M R      + +++D IRS  P   + S+FIVGFPGE++ D  
Sbjct: 294 PYFDLSFQHSAPGVLRAMRRFGDTDRFLELLDTIRSRAPQAGVRSNFIVGFPGESEADLA 353

Query: 349 ATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDA 408
                ++         F YS   GT  +    +++E+V AERL  + +   E      D 
Sbjct: 354 ELERFLNHARLDAIGVFGYSDEEGTEAATYDTKLEEDVVAERLARVSRLAEELVSQRADE 413

Query: 409 CVGQIIEVLIEKHGKEKG 426
            VG+ + VL+E   +E+G
Sbjct: 414 RVGETVHVLVESVDEEEG 431


>gi|314923015|gb|EFS86846.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes
           HL001PA1]
          Length = 474

 Score =  157 bits (396), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 133/465 (28%), Positives = 208/465 (44%), Gaps = 56/465 (12%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N  DS  +     + G+  V+   +A+ +V+NTC   E+A +     L    +L
Sbjct: 7   SMGCARNDVDSEELAARMEAGGFRLVDDPAEAETVVVNTCGFIEQAKKDSVDTLLAAADL 66

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYY----RLPELLERARF- 145
           + +    G    VV  GC+A+  G E+    P  + V+G   Y     RL  +L+     
Sbjct: 67  RGN----GTTTSVVAVGCMAERYGRELAESLPEADAVLGFDDYGDIAGRLRTILDGGSLE 122

Query: 146 -----GKRVVDTDYSVEDKFERLSIVDGGY------------------NRKR---GVTAF 179
                 +R +     V+    R  +   G+                   R+R   G +A 
Sbjct: 123 THVPRDRRTLLPISPVDRPIARAEVSVPGHGTAPDLPASVAPESGPRPTRRRLGTGPSAP 182

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
           L +  GCD+ C FC +P  RG  +SR ++++V+EAR L+D+GV E+ L+ +N +++ GK 
Sbjct: 183 LKMASGCDRRCAFCAIPRFRGSYLSRPIAEIVEEARWLVDHGVKEVFLVSENSSSY-GKD 241

Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
           L G+      LL +L ++ GL  +R +   P ++   LI      D ++PY  L  Q  S
Sbjct: 242 L-GDLRLLEKLLVTLDQVDGLEWIRVSYLQPAELRPGLIDTILAADKVVPYFDLSFQHAS 300

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
             +L+SM R   A  +  IID IRS  P+    S+FI GFPGETD D     D + +   
Sbjct: 301 GPVLRSMRRFGDAESFLNIIDSIRSRCPEAGFRSNFITGFPGETDADVAVLADFLQRARL 360

Query: 360 AQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419
             A  F YS   GT  + +   VDE+V   R        RE      D  V Q  E  I 
Sbjct: 361 DVAGIFAYSDEEGTEAAGLDGHVDEDVITAR--------REDLADLTDELVSQRAEDRIG 412

Query: 420 KHGKE-----KGKLVGRS----PWLQSVV--LNSKNHNIGDIIKV 453
             G+         ++GR+    P +   V  +++   ++GDI+ V
Sbjct: 413 TRGRVMVEEIDEAVIGRAEHQGPEVDGCVTLVDAAAVSVGDIVDV 457


>gi|302335758|ref|YP_003800965.1| RNA modification enzyme, MiaB family [Olsenella uli DSM 7084]
 gi|301319598|gb|ADK68085.1| RNA modification enzyme, MiaB family [Olsenella uli DSM 7084]
          Length = 422

 Score =  156 bits (395), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 120/413 (29%), Positives = 197/413 (47%), Gaps = 46/413 (11%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSM----DDADLIVLNTCHIREKAAEK 79
           P+  FV + GC++N     R+E    +Q   R   +    ++AD +V+NTC +  +A  K
Sbjct: 4   PRVAFV-NLGCRVN-----RVEVDLIAQELARAGCVIVKPEEADAVVVNTCAVTAEAEAK 57

Query: 80  VYSFLGRIRNLKNSRIKEGGDLLVVVA-GCVAQAEGEEILRRSPIVNVVVGPQTYYRLPE 138
               + R  +L        G + VVVA GCVA    +E+   +P V V            
Sbjct: 58  TRKVVRRAASL--------GQVPVVVATGCVASLFSDELASIAPNVTVEA---------- 99

Query: 139 LLERARFGKRVVD----TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCV 194
             +++R  + V+        SV D  E ++        + G+     +Q+GCD  CT+C+
Sbjct: 100 --DKSRVSETVLGELGLPAGSVGDDGELVATPTPTGRARPGIK----VQDGCDNRCTYCI 153

Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL 254
           V   RG   S    +VV   R  +  G  E+ L G N+ ++RG    G +     LL  +
Sbjct: 154 VWKARGAARSMGSGEVVSAVRDALSRGAREVVLTGINLGSFRGTCAGGGRIALPGLLELV 213

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKA-HGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
                + R+R ++  P D+   L+     +   + P+LH+ +QSG D  L+ M R +   
Sbjct: 214 LRETTVERVRLSSIEPPDVDGELLSVMAANPARIAPFLHVCLQSGCDATLRRMGRVYDTA 273

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
            YR  I R R + P IA+  D IVGFPGETDDDF  ++    ++ +A+   F+YS R GT
Sbjct: 274 LYRTAIARAREMVPGIAVGCDLIVGFPGETDDDFERSLAFCAEMDFAKMHVFRYSRRPGT 333

Query: 374 PGSNMLEQVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK 423
           P ++  +QV  +V   ++ R+  L  ++R  Q +     VGQ   V++++ G+
Sbjct: 334 PAASAPDQVGPDVMAARSSRMRALADRMRHDQAARR---VGQEELVVVQRPGR 383


>gi|198276872|ref|ZP_03209403.1| hypothetical protein BACPLE_03077 [Bacteroides plebeius DSM 17135]
 gi|198270397|gb|EDY94667.1| hypothetical protein BACPLE_03077 [Bacteroides plebeius DSM 17135]
          Length = 438

 Score =  156 bits (395), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 116/396 (29%), Positives = 192/396 (48%), Gaps = 28/396 (7%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N  ++  +       G       + AD+ V+NTC + E A +K    + R+   
Sbjct: 16  TLGCKLNFAETSSIGKTLKEAGVRTARKGEKADICVINTCSVTEMADKKCRQAIHRLS-- 73

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL---ERARFGK 147
                ++  D  +VV GC AQ +  ++      V++V+G +    L   L   ++   G+
Sbjct: 74  -----RQHPDAFIVVTGCYAQLKPGQVADIEG-VDLVLGAEQKGELMNYLGNLQKHTHGE 127

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
            VV     +       S  D    R R    FL +Q+GCD FC++C +P+ RG   +  +
Sbjct: 128 AVVTATKDIRTFSPSCSRGD----RTR---YFLKVQDGCDYFCSYCTIPFARGRSRNGKI 180

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
             +V +AR+    G  EI L G N+  + GK   GE  TF DL+ +L E++G+ R R ++
Sbjct: 181 EDLVTQARQAAAEGGKEIVLTGVNIGDF-GKST-GE--TFFDLVKALDEVEGIERYRISS 236

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
             P  ++D +I+        MP+ H+P+QSG D +LK M RR+    +   I +I+S+ P
Sbjct: 237 IEPNLLTDEIIEYVAQSRRFMPHFHIPLQSGCDEVLKLMRRRYDTALFAAKIAKIKSLMP 296

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM---LEQVDE 384
           D  I  D IVG  GET + F    + +  +   Q   F YS R GT    +   +   ++
Sbjct: 297 DAFIGVDVIVGTRGETPEYFEKAYEFIKGLDVTQLHVFSYSERPGTQALKIDYVVPAQEK 356

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
           + +++RLL L     E+  +F    +G   EVL+EK
Sbjct: 357 HARSQRLLELSD---EKTKAFYARHIGAEAEVLMEK 389


>gi|269837471|ref|YP_003319699.1| MiaB-like tRNA modifying enzyme YliG [Sphaerobacter thermophilus
           DSM 20745]
 gi|269786734|gb|ACZ38877.1| MiaB-like tRNA modifying enzyme YliG [Sphaerobacter thermophilus
           DSM 20745]
          Length = 466

 Score =  156 bits (395), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 126/459 (27%), Positives = 223/459 (48%), Gaps = 38/459 (8%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + F + + GC  N  DS  +  +   QG   V   +DA ++V+NTC     AA +  S +
Sbjct: 3   ESFHIVTLGCSKNQVDSEGIARVLSQQGMTPVARPEDARVLVVNTCGF--LAASRQES-V 59

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G I  L  +R     D +V+ AGC+A  +   +EI      V+ ++  + +  +  ++  
Sbjct: 60  GVINELLETRRP---DQVVIAAGCMASLDQHRQEIPEG---VDAILSTREWANIGHVV-- 111

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
              G+ +   D   +  F+   ++     R  G +A++ I +GCD  C FCV+P  +G +
Sbjct: 112 ---GRLLGYEDIPPQPPFDPAGMLTSFTRRDAGPSAYVKIADGCDHGCHFCVIPLIKGRQ 168

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSE-IKGL 260
           +S+  S V+ E R+L+D G  E+ L+ Q+   +   G D G K     LL  ++E +  L
Sbjct: 169 VSKRPSDVIREIRELVDGGTKEVILVAQDTIRY---GADLGIKNGLPGLLRMIAEEVPDL 225

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
             LR    +P  ++  L+ A  +  + +PYL +P+Q     +L+ M R  +    R++ID
Sbjct: 226 PWLRMLYIYPSPLTLRLVDAMTEHPMFVPYLDMPIQHADPTVLRRMGRPSSIDMTRRLID 285

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
             R+  PD+ + +  IVG+PGET++ F+   D V ++ +     F YS    T  + +  
Sbjct: 286 HARNRLPDVTMRTTLIVGYPGETEEQFQRLYDFVAEMEFDHVGVFTYSYEPNTKSALLDN 345

Query: 381 QV-DENVKAERLLCLQKKLREQQVSF--NDACVGQIIEVLIEKHGK---EKGKL----VG 430
            V  E  +A R   ++    +Q +S   N A VG+ +EVL+E  G+   E+G+     VG
Sbjct: 346 PVPPEEAEARRAAIMEL---QQGISLKKNQALVGRTLEVLVEAVGEMEDERGRTEPISVG 402

Query: 431 R----SPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYG 465
           R    +P +  +V       +G++I+ R+T      L+ 
Sbjct: 403 RARRHAPEVDGLVFIPGALPVGELIQARVTAASPYDLWA 441


>gi|39933328|ref|NP_945604.1| MiaB-like tRNA modifying enzyme [Rhodopseudomonas palustris CGA009]
 gi|39652953|emb|CAE25695.1| MiaB-like tRNA modifying enzyme [Rhodopseudomonas palustris CGA009]
          Length = 423

 Score =  156 bits (395), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 132/448 (29%), Positives = 208/448 (46%), Gaps = 60/448 (13%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V ++GC++N ++S  +       G         AD IV+N+C +  +A  +      +IR
Sbjct: 5   VVTFGCRLNAFESELIRREAEGAGL--------ADTIVVNSCAVTNEAVAQARQ---QIR 53

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
            LK +R     +  ++V GC AQ E       +  V+ V+G     R       A  G  
Sbjct: 54  KLKRAR----PEARIIVTGCAAQTEPATFAAMAE-VDRVIGNDDKTRSDAW--HAAKGAL 106

Query: 149 VVDTDYSVEDKFERLSIVD------------GGYNRKRGVT-AFLTIQEGCDKFCTFCVV 195
                + + D  +++++ D             GY  + G+   F+ +Q GCD  CTFC++
Sbjct: 107 EAGPSFGL-DTEQKIAVADIMAVREMAPHLLDGY--QSGLPRVFVQVQNGCDHRCTFCII 163

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
           PY RG   S  +  VV++ R L + G  EI L G ++ ++ G  L G     + +   L 
Sbjct: 164 PYGRGNSRSVPVGAVVEQVRLLAERGHAEIVLTGVDLTSY-GADLPGAPKLGTLVKKVLR 222

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
            +  L RLR ++    +    LI A      LMP+LHL +Q+G D +LK M RRH   + 
Sbjct: 223 HVPELQRLRISSIDQVEADRDLIDALATEPRLMPHLHLSLQAGDDLVLKRMKRRHCRADA 282

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
               + +R +RPDIA+ +D I GFP ET++ F+ ++DLV++ G      F YSPR GTP 
Sbjct: 283 VAFCEEVRLLRPDIALGADLIAGFPTETEEMFQRSLDLVEECGLTFLHVFPYSPRPGTPA 342

Query: 376 SNMLEQVDENV--------KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK 427
           + M  Q+D  V        +A     LQ++L        DA +G    VLIE   +    
Sbjct: 343 ARM-PQLDGRVIRDRAARLRAAGEAALQRRL--------DAEIGATRAVLIESPTQ---- 389

Query: 428 LVGRSPWLQSVVLNSKNHNIGDIIKVRI 455
             GR+     V ++      GD+  +RI
Sbjct: 390 --GRTEHFLPVAISGATP--GDVQTLRI 413


>gi|38345374|emb|CAD40910.2| OSJNBa0088K19.13 [Oryza sativa Japonica Group]
          Length = 626

 Score =  156 bits (395), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 123/456 (26%), Positives = 211/456 (46%), Gaps = 44/456 (9%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           Q  +VK++GC  N  DS  M     + GY      + ADL ++NTC ++  +   + + +
Sbjct: 58  QTIYVKTFGCSHNQSDSEYMSGQLSAFGYAITEEPEGADLWLINTCTVKNPSQSAMTTLI 117

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            + ++             +VVAGCV Q  G   L+    ++V+ G Q   R+ E++E   
Sbjct: 118 SKCKSANKP---------LVVAGCVPQ--GSRDLKELEGISVI-GVQQIDRVVEVVEETL 165

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G  V           + L  +D    RK      L I  GC   CT+C   + RG   S
Sbjct: 166 KGHEVRLLSR------KTLPSLDLPKVRKNKFIEILPINVGCLGACTYCKTKHARGHLGS 219

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAW-RGKG------LDGEKCTFSDLLYSLSEI 257
            ++  +VD  + ++  GV EI L  ++  A+ R  G      L+G          ++  I
Sbjct: 220 YTIESLVDRVKIVVSEGVREIWLSSEDTGAYGRDIGTNLPNLLNGIAAELPADRSTMLRI 279

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
            G+    +   H ++++  L         +  +LH+PVQSGSD +L +MNR +T  E+R+
Sbjct: 280 -GMTNPPFILEHLKEIASVLCHP-----CVYSFLHVPVQSGSDAVLTAMNREYTVSEFRR 333

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
           ++D +  + P + I++D I GFPGETD+DF  T++LV +  + Q    ++ PR GTP + 
Sbjct: 334 VVDTLCELVPGMQIATDIICGFPGETDEDFSQTVNLVKQYLFPQVHISQFYPRPGTPAAR 393

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFND-----ACVGQIIEVLIEKHGKEKGKLVGRS 432
           M +     VK        K+ RE    F          G++  + I +   +   LVG +
Sbjct: 394 MKKVPSVEVK--------KRSRELTSVFESFSPYQGMEGKVERIWITEIATDGVHLVGHT 445

Query: 433 PWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
                V++ + +  +G    V+IT V   +++GE++
Sbjct: 446 KGYIQVLVIAPDSMLGTSADVKITSVGRWSVFGEVI 481


>gi|327330227|gb|EGE71976.1| Fe-S oxidoreductase [Propionibacterium acnes HL097PA1]
          Length = 474

 Score =  156 bits (395), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 134/465 (28%), Positives = 205/465 (44%), Gaps = 56/465 (12%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N  DS  +     + G+  V+   +A+ +V+NTC   E+A +     L    +L
Sbjct: 7   SMGCARNDVDSEELAARMEAGGFRLVDDPAEAETVVVNTCGFIEQAKKDSVDTLLAAADL 66

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYY----RLPELLE----- 141
           K + I       VV  GC+A+  G E+    P  + V+G   Y     RL  +L+     
Sbjct: 67  KGNGITTS----VVAVGCMAERYGRELAESLPEADAVLGFDDYGDIAGRLRTILDGGSLE 122

Query: 142 -----------------RARFGKRVVDTDYSVEDKFERLSIVDGG--YNRKR---GVTAF 179
                            R      V    +     F      D G    R+R   G +A 
Sbjct: 123 THVPRDRRTLLPISPVNRPTARAEVSVPGHGTAPDFSASVTPDSGPRATRRRLGTGPSAP 182

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
           L +  GCD+ C FC +P  RG  +SR ++++V+EAR L+D+GV E+ L+ +N +++ GK 
Sbjct: 183 LKMASGCDRRCAFCAIPRFRGSYLSRPIAEIVEEARWLVDHGVKEVFLVSENSSSY-GKD 241

Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
           L G+      LL +L ++ GL  +R +   P ++   LI      D ++PY  L  Q  S
Sbjct: 242 L-GDLRLLEKLLVNLDQVDGLEWIRVSYLQPAELRPGLIDTILATDKVVPYFDLSFQHAS 300

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
             +L+ M R   A  +  IID IRS  P+  + S+FI GFPGETD D     D + +   
Sbjct: 301 GPLLRRMRRFGDAESFLNIIDSIRSRCPEAGLRSNFITGFPGETDADVAVLADFLQRARL 360

Query: 360 AQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419
             A  F YS   GT  + +   VDE+V   R        RE      D  V Q  E  I 
Sbjct: 361 DVAGVFAYSDEEGTEAAGLDGHVDEDVVTAR--------REDLADLTDELVSQRAEDRIG 412

Query: 420 KHGKE-----KGKLVGRS----PWLQSVV--LNSKNHNIGDIIKV 453
             G+         ++GR+    P +   V  +++   ++GDI+ V
Sbjct: 413 TRGRVMVEEIDEAVIGRAEHQGPEVDGCVTLVDAAAVSVGDIVDV 457


>gi|115458480|ref|NP_001052840.1| Os04g0434300 [Oryza sativa Japonica Group]
 gi|113564411|dbj|BAF14754.1| Os04g0434300 [Oryza sativa Japonica Group]
          Length = 621

 Score =  156 bits (395), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 123/456 (26%), Positives = 212/456 (46%), Gaps = 44/456 (9%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           Q  +VK++GC  N  DS  M     + GY      + ADL ++NTC ++  +   + + +
Sbjct: 53  QTIYVKTFGCSHNQSDSEYMSGQLSAFGYAITEEPEGADLWLINTCTVKNPSQSAMTTLI 112

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            + ++             +VVAGCV Q  G   L+    ++V+ G Q   R+ E++E   
Sbjct: 113 SKCKSANKP---------LVVAGCVPQ--GSRDLKELEGISVI-GVQQIDRVVEVVEETL 160

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G  V           + L  +D    RK      L I  GC   CT+C   + RG   S
Sbjct: 161 KGHEVRLLSR------KTLPSLDLPKVRKNKFIEILPINVGCLGACTYCKTKHARGHLGS 214

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAW-RGKG------LDGEKCTFSDLLYSLSEI 257
            ++  +VD  + ++  GV EI L  ++  A+ R  G      L+G          ++  I
Sbjct: 215 YTIESLVDRVKIVVSEGVREIWLSSEDTGAYGRDIGTNLPNLLNGIAAELPADRSTMLRI 274

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
            G+    +   H ++++  L         +  +LH+PVQSGSD +L +MNR +T  E+R+
Sbjct: 275 -GMTNPPFILEHLKEIASVLCHP-----CVYSFLHVPVQSGSDAVLTAMNREYTVSEFRR 328

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
           ++D +  + P + I++D I GFPGETD+DF  T++LV +  + Q    ++ PR GTP + 
Sbjct: 329 VVDTLCELVPGMQIATDIICGFPGETDEDFSQTVNLVKQYLFPQVHISQFYPRPGTPAAR 388

Query: 378 MLEQVDENVKAERLLCLQKKLRE-----QQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS 432
           M +     VK        K+ RE     +  S      G++  + I +   +   LVG +
Sbjct: 389 MKKVPSVEVK--------KRSRELTSVFESFSPYQGMEGKVERIWITEIATDGVHLVGHT 440

Query: 433 PWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
                V++ + +  +G    V+IT V   +++GE++
Sbjct: 441 KGYIQVLVIAPDSMLGTSADVKITSVGRWSVFGEVI 476


>gi|83745890|ref|ZP_00942947.1| Fe-S OXIDOREDUCTASE [Ralstonia solanacearum UW551]
 gi|83727580|gb|EAP74701.1| Fe-S OXIDOREDUCTASE [Ralstonia solanacearum UW551]
          Length = 462

 Score =  156 bits (395), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 135/477 (28%), Positives = 223/477 (46%), Gaps = 65/477 (13%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  FV S GC   + DS ++     ++GYE   +   ADL+V+NTC   ++A ++    
Sbjct: 18  PRVGFV-SLGCPKALVDSEQIITQLRAEGYEISGTYGGADLVVVNTCGFIDEAVQESLDA 76

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQ---AEGEEILRR-SPIVNVVVGPQTYYRLPEL 139
           +G         + E G   V+V GC+     A G +I+    P V  V GP   + L E+
Sbjct: 77  IGEA-------LAENGK--VIVTGCLGAKKDATGNDIITSVHPKVLAVTGP---HALGEV 124

Query: 140 LERARFGKRVVDTDYS-VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
           +E        V T      D F  L +   G        A+L I EGC+  C+FC++P  
Sbjct: 125 ME-------AVHTHLPKPHDPFIDL-VPPQGIKLTPKHYAYLKISEGCNHRCSFCIIPSM 176

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTF 247
           RG  +SR +++V+ EA  L+  GV E+ ++ Q+ +A           W G+ L   K   
Sbjct: 177 RGDLVSRPVAEVMLEAENLLKAGVKELLVISQDTSAYGVDVKFRTGFWNGRPL---KTRM 233

Query: 248 SDLLYSLSEIKG----LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
           ++L+ +L E+       VRL Y   +P       + A G +   +PYL +P+Q     +L
Sbjct: 234 TELVGALGELAAQYGAWVRLHYVYPYPSVDEVMPLMAEGKV---LPYLDVPLQHAHPDVL 290

Query: 304 KSMNRRHTAYEYRQIIDRIRSVR---PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
           K M R   A    + +DRIR+ R   P++ I S FI GFPGET+++F+  +D + +    
Sbjct: 291 KRMKRPANA---EKTLDRIRAWREVCPELTIRSTFIAGFPGETEEEFQTLLDFIGEAELD 347

Query: 361 QAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
           +   F YSP  G   +++   + + V+ ER     +             VG+ + VL+++
Sbjct: 348 RVGCFAYSPVEGATANDLPGALPDEVREERRARFMEVAERVSARRLQRKVGKTLRVLVDE 407

Query: 421 HGKEKGKLVGRS----PWLQSVVLNS------KNHNIGDIIKVRITDVKISTLYGEL 467
             ++ G  +GRS    P +  +V  +      K +  GD + V+IT      L+GE+
Sbjct: 408 VNQDGG--IGRSSADAPEIDGLVYIAPPSKPYKRYKTGDFVSVKITGADGHDLWGEV 462


>gi|207743025|ref|YP_002259417.1| 2-methylthioadenine synthetase protein [Ralstonia solanacearum
           IPO1609]
 gi|206594422|emb|CAQ61349.1| 2-methylthioadenine synthetase protein [Ralstonia solanacearum
           IPO1609]
          Length = 459

 Score =  156 bits (395), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 135/477 (28%), Positives = 223/477 (46%), Gaps = 65/477 (13%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  FV S GC   + DS ++     ++GYE   +   ADL+V+NTC   ++A ++    
Sbjct: 15  PRVGFV-SLGCPKALVDSEQIITQLRAEGYEISGTYGGADLVVVNTCGFIDEAVQESLDA 73

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQ---AEGEEILRR-SPIVNVVVGPQTYYRLPEL 139
           +G         + E G   V+V GC+     A G +I+    P V  V GP   + L E+
Sbjct: 74  IGEA-------LAENGK--VIVTGCLGAKKDATGNDIITSVHPKVLAVTGP---HALGEV 121

Query: 140 LERARFGKRVVDTDYS-VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
           +E        V T      D F  L +   G        A+L I EGC+  C+FC++P  
Sbjct: 122 ME-------AVHTHLPKPHDPFIDL-VPPQGIKLTPKHYAYLKISEGCNHRCSFCIIPSM 173

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTF 247
           RG  +SR +++V+ EA  L+  GV E+ ++ Q+ +A           W G+ L   K   
Sbjct: 174 RGDLVSRPVAEVMLEAENLLKAGVKELLVISQDTSAYGVDVKFRTGFWNGRPL---KTRM 230

Query: 248 SDLLYSLSEIKG----LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
           ++L+ +L E+       VRL Y   +P       + A G +   +PYL +P+Q     +L
Sbjct: 231 TELVGALGELAAQYGAWVRLHYVYPYPSVDEVMPLMAEGKV---LPYLDVPLQHAHPDVL 287

Query: 304 KSMNRRHTAYEYRQIIDRIRSVR---PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
           K M R   A    + +DRIR+ R   P++ I S FI GFPGET+++F+  +D + +    
Sbjct: 288 KRMKRPANA---EKTLDRIRAWREVCPELTIRSTFIAGFPGETEEEFQTLLDFIGEAELD 344

Query: 361 QAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
           +   F YSP  G   +++   + + V+ ER     +             VG+ + VL+++
Sbjct: 345 RVGCFAYSPVEGATANDLPGALPDEVREERRARFMEVAERVSARRLQRKVGKTLRVLVDE 404

Query: 421 HGKEKGKLVGRS----PWLQSVVLNS------KNHNIGDIIKVRITDVKISTLYGEL 467
             ++ G  +GRS    P +  +V  +      K +  GD + V+IT      L+GE+
Sbjct: 405 VNQDGG--IGRSSADAPEIDGLVYIAPPSKPYKRYKTGDFVSVKITGADGHDLWGEV 459


>gi|196007898|ref|XP_002113815.1| hypothetical protein TRIADDRAFT_26388 [Trichoplax adhaerens]
 gi|190584219|gb|EDV24289.1| hypothetical protein TRIADDRAFT_26388 [Trichoplax adhaerens]
          Length = 529

 Score =  156 bits (395), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 122/468 (26%), Positives = 215/468 (45%), Gaps = 43/468 (9%)

Query: 16  QIVDQCIVP--QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIR 73
           + V   I+P  Q  +++++GC  N  D   M     S GY+     ++ADL +LN+C ++
Sbjct: 58  KAVGDSIIPGTQGIYIRTWGCSHNKSDGEYMAGQLSSYGYKITEIPEEADLWLLNSCAVK 117

Query: 74  EKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVN--VVVGPQ 131
             A +  Y+ + + + LK           +V+AGCV Q +     +R P+++   VVG Q
Sbjct: 118 NPAEDSFYNDIRKAKELKK---------YLVLAGCVPQGQ-----KRHPLMDGISVVGVQ 163

Query: 132 TYYRLPELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190
              R+ E++E    G  V +        K    + ++    RK  +   + I  GC   C
Sbjct: 164 QIDRVVEVVEETLKGHSVRLFGQKRKNGKKLGGAPLNLPKIRKNPLVEIIAINTGCLNAC 223

Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDL 250
           T+C   + RG   S  +  +V+ A+   + GV EI +  ++  A+   G+D    +  DL
Sbjct: 224 TYCKTKHARGDLGSYPIEDIVERAKTAFNEGVAEIWITSEDTGAY---GID-IGVSLPDL 279

Query: 251 LYSLSEIK--------GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
           L+ L ++         G+    Y   H  +M+  L         +  +LH+PVQ+GSD++
Sbjct: 280 LWQLVKVIPDGAMLRIGMTNPPYILEHLEEMAKILSHPR-----VYSFLHVPVQAGSDKV 334

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           L  M R +T  ++ ++++ +    P I I++D I GFP E  DDF  T+ L+++  +   
Sbjct: 335 LYDMRREYTVTDFEKVVNYLSDKVPGITIATDIICGFPTEEKDDFAKTLRLIERHKFPSV 394

Query: 363 FSFKYSPRLGTPGSNMLEQVDENVK--AERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
           F  ++ PR GTP + M     E VK  +  L  L K  R       D  +G+   +LI +
Sbjct: 395 FINQFYPRPGTPAAKMKRIPTEEVKNRSRELTQLFKSYRPY-----DHKLGERQRILITE 449

Query: 421 HGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
              +    VG + +   V++      +G  ++V I +     L G +V
Sbjct: 450 LSHDGNHFVGHNKFYDQVLVPMDMDLLGKTVEVDIIETGKHYLMGRVV 497


>gi|126178768|ref|YP_001046733.1| MiaB-like tRNA modifying enzyme [Methanoculleus marisnigri JR1]
 gi|125861562|gb|ABN56751.1| MiaB-like tRNA modifying enzyme [Methanoculleus marisnigri JR1]
          Length = 374

 Score =  156 bits (394), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 95/275 (34%), Positives = 146/275 (53%), Gaps = 12/275 (4%)

Query: 171 NRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQ 230
            R  G T  + +  GC   C++C+    RG  IS     + D  R L+ +G CEI L GQ
Sbjct: 75  TRGPGATGVVQVASGCVGRCSYCITRLARGRLISAPREAIADAVRALVTSGACEIQLTGQ 134

Query: 231 NVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD---MSDCLIKAHGDLDV 286
           +V AW   GLD GE  +  DLL  ++EI G   +R    HP     + + L+ A+    +
Sbjct: 135 DVAAW---GLDRGE--SLPDLLQEIAEIPGRFAVRPGMMHPATVLGILEPLVDAYESKKI 189

Query: 287 LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDD 346
              +LHLPVQSGSD +L+ M R +TA +  +I+D  R   PD+ ISSDFI GFPGETD++
Sbjct: 190 FR-FLHLPVQSGSDTVLERMQRGYTAADVLRIVDAFRERYPDMMISSDFITGFPGETDEE 248

Query: 347 FRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFN 406
           F  T++L+ +  + +    +YS R GTP +  L+ + E ++ +R   L  +      S+N
Sbjct: 249 FSQTLELLRRAAFVKVNITRYSRRPGTPAA-ALKDLPERIRKDRSRTLLAEANRVYDSYN 307

Query: 407 DACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           +  +G+   + +       G  V R+P   +VV+ 
Sbjct: 308 ERWIGRETSI-VATEKNAPGSTVCRNPCYLNVVVK 341


>gi|222111666|ref|YP_002553930.1| ribosomal protein s12 methylthiotransferase [Acidovorax ebreus
           TPSY]
 gi|221731110|gb|ACM33930.1| MiaB-like tRNA modifying enzyme YliG [Acidovorax ebreus TPSY]
          Length = 463

 Score =  156 bits (394), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 135/486 (27%), Positives = 215/486 (44%), Gaps = 60/486 (12%)

Query: 14  VSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIR 73
           +SQ +     P+  FV S GC  N+ DS  +     ++GYE   + + ADL+++NTC   
Sbjct: 1   MSQALSPAKTPKIGFV-SLGCPKNLTDSELLLTQLSAEGYETSKTFEGADLVIVNTCGFI 59

Query: 74  EKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEE----ILRRSPIVNVVVG 129
           ++A ++    +G         + E G   V+V GC+    GE     +    P V  V G
Sbjct: 60  DEAVKESLDTIGEA-------LAENGK--VIVTGCLGARAGETGGNLVKEVHPSVLAVTG 110

Query: 130 PQTYYRLPELLERARFGKRVVDTD-YSVEDKFERLSIVDGGYNRKRGVT------AFLTI 182
           P       E++E       VV T      D F  L +V G +  + G+       A+L I
Sbjct: 111 PHAAQ---EVME-------VVHTHCPKPHDPF--LDLVPGSFG-EAGIKLTPRHYAYLKI 157

Query: 183 QEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-------- 234
            EGC+  CTFC++P  RG  +SR +  V+ EA+ L + GV E+ ++ Q+ +A        
Sbjct: 158 SEGCNHRCTFCIIPSMRGDLVSRPVGDVLKEAKALFEGGVKELLVISQDTSAYGVDVKYR 217

Query: 235 ---WRGKGLDGEKCTFSDLLYSLSEIKG-LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY 290
              W GK +          L  ++   G  VRL Y   +P       + A G   +++PY
Sbjct: 218 TGFWDGKPVKTRTLELVQTLGEMAATYGAWVRLHYVYPYPSVDDIIPLMAQG---LVLPY 274

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
           L +P Q     +LK M R  +  +  + I R R   P+I I S FI GFPGET+++F+  
Sbjct: 275 LDVPFQHSHPDVLKRMKRPASGEKNLERILRWREACPEIVIRSTFIAGFPGETEEEFQHL 334

Query: 351 MDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACV 410
           +D V +    +A  F YS   G   + +   +   ++ ER         E   +     V
Sbjct: 335 LDFVREAQIDRAGCFAYSDVEGAAANELPGMLPMELREERRARFMAVAEEVSTAKLQRRV 394

Query: 411 GQIIEVLIEK-----HGKEKGKLVGRSPWLQSVVL------NSKNHNIGDIIKVRITDVK 459
           GQ ++VL+++          G+    +P +  VV        SK + +GD +K RI   +
Sbjct: 395 GQTMQVLVDQAVGLGKKGGVGRSYADAPEIDGVVHLLPPEKFSKTYKVGDFVKARIVGTQ 454

Query: 460 ISTLYG 465
              L G
Sbjct: 455 GHDLVG 460


>gi|240851393|ref|YP_002972796.1| tRNA modification enzyme, MiaB family [Bartonella grahamii as4aup]
 gi|240268516|gb|ACS52104.1| tRNA modification enzyme, MiaB family [Bartonella grahamii as4aup]
          Length = 427

 Score =  156 bits (394), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 115/397 (28%), Positives = 187/397 (47%), Gaps = 28/397 (7%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           ++GC++N Y+S  +     S G +++   D A  I+ NTC +  +A  +    + + R  
Sbjct: 7   TFGCRLNSYESEIIRKESTSSGLDQLK--DGA--IIFNTCAVTAEAVRQAKQAIRKAR-- 60

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG------PQTYYRLPELLERAR 144
                +E     ++V GC AQ E +        V++V+G        +Y +LP+      
Sbjct: 61  -----RENPHARIIVTGCAAQTEAQNFASMRE-VDLVLGNEDKLHAHSYRQLPDFGINHS 114

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
              R+ D    +E +     +V     R R   AF+ +Q GCD  CTFC++PY RG   S
Sbjct: 115 EKVRINDI---MEVQKIAPHMVSAMQERTR---AFVQVQNGCDHRCTFCIIPYGRGPSRS 168

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS-LSEIKGLVRL 263
             +  V+++ +KLI  G+ E+ L G ++ ++ G  L G K T   L  + L  +  L RL
Sbjct: 169 VPMGAVIEQIKKLIGEGIQEVVLTGVDLTSY-GHDLPG-KATLGKLTSAILHHVPNLARL 226

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R ++    +  + LI        +MP+LHL +Q+G + ILK M RRH      Q    +R
Sbjct: 227 RLSSIDSIEADEELINLLAYETRIMPHLHLSLQAGDNMILKRMKRRHLREHAIQFCQELR 286

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           + RP +   +D I GFP ET++ F+ ++ L+          F +SPR GTP + M  Q++
Sbjct: 287 AKRPTMVYGADLIAGFPTETEEMFQNSLVLIKDCNLTHLHVFPFSPREGTPAARM-PQIN 345

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
             +   R   L+K   E            +  VLIEK
Sbjct: 346 RKIVKIRAEKLRKAGEEAYQKHLSHLQNSLQTVLIEK 382


>gi|257784598|ref|YP_003179815.1| RNA modification enzyme, MiaB family [Atopobium parvulum DSM 20469]
 gi|257473105|gb|ACV51224.1| RNA modification enzyme, MiaB family [Atopobium parvulum DSM 20469]
          Length = 423

 Score =  156 bits (394), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 123/400 (30%), Positives = 192/400 (48%), Gaps = 31/400 (7%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N  +   M +     G   V   D+A  IV+NTC +  +A  K        + +
Sbjct: 9   NLGCRVNRVELDLMAESLLRMGCHIVEE-DEAQAIVINTCAVTAEAEAKTR------KAV 61

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
           + + +  G  L VV  GCVA    EE+   +P  NVVV  +       +LE   F    V
Sbjct: 62  RKAALMPGAPL-VVATGCVASLFAEELASLAP--NVVVEAEKDKVADRVLEELGFAPESV 118

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
             D  V  K         G          + IQ+GCD  CTFC+V   RG   S    +V
Sbjct: 119 SDDGLVISKPTPTGRTRPG----------IKIQDGCDNRCTFCIVWKARGAGKSLDPRKV 168

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKC-TFSDLLYSLSEIKGLVRLRYTTS 268
           V + +  +  G  E+ L G N+ +++ +  D GEK     DLL  + E   + RLR ++ 
Sbjct: 169 VSQVKDAMSRGAQEVVLTGINLGSYKVQLEDEGEKIFRLPDLLEYVLEKTEVGRLRLSSL 228

Query: 269 HPRDMSDCLIKAHGDLD-VLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
            P D++  L+K     +  + P+LH+ +QSG D  L  M R +    YR+ ++  RS   
Sbjct: 229 EPPDVNARLVKVIAASNGRVAPFLHICLQSGCDATLARMGRVYRTELYRKAVEEARSELS 288

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
            IA+ +D IVGFPGETD +F  + +   ++G+++   F+YS R GTP +    QV+  V 
Sbjct: 289 TIALGTDLIVGFPGETDKEFEESYEFCRQMGFSKMHVFRYSKRPGTPAATAPNQVNPKVM 348

Query: 388 AERLLCLQKKLRE--QQVSFNDA--CVGQIIEVLIEKHGK 423
           AER     KK+R+   ++ F+ A   +G    V+++  GK
Sbjct: 349 AER----AKKMRDLGNKMRFDAAKKLIGTCDNVVVQYPGK 384


>gi|207724170|ref|YP_002254568.1| 2-methylthioadenine synthetase protein [Ralstonia solanacearum
           MolK2]
 gi|206589380|emb|CAQ36342.1| 2-methylthioadenine synthetase protein [Ralstonia solanacearum
           MolK2]
          Length = 459

 Score =  156 bits (394), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 135/477 (28%), Positives = 223/477 (46%), Gaps = 65/477 (13%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  FV S GC   + DS ++     ++GYE   +   ADL+V+NTC   ++A ++    
Sbjct: 15  PRVGFV-SLGCPKALVDSEQIITQLRAEGYEISGTYGGADLVVVNTCGFIDEAVQESLDA 73

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQ---AEGEEILRR-SPIVNVVVGPQTYYRLPEL 139
           +G         + E G   V+V GC+     A G +I+    P V  V GP   + L E+
Sbjct: 74  IGEA-------LAENGK--VIVTGCLGAKKDATGNDIITSVHPKVLAVTGP---HALGEV 121

Query: 140 LERARFGKRVVDTDYS-VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
           +E        V T      D F  L +   G        A+L I EGC+  C+FC++P  
Sbjct: 122 ME-------AVHTHLPKPHDPFIDL-VPPQGIKLTPKHYAYLKISEGCNHRCSFCIIPSM 173

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTF 247
           RG  +SR +++V+ EA  L+  GV E+ ++ Q+ +A           W G+ L   K   
Sbjct: 174 RGDLVSRPVAEVMLEAENLLKAGVKELLVISQDTSAYGVDVKFRTGFWNGRPL---KTRM 230

Query: 248 SDLLYSLSEIKG----LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
           ++L+ +L E+       VRL Y   +P       + A G +   +PYL +P+Q     +L
Sbjct: 231 TELVGALGELAAQYGAWVRLHYVYPYPSVDEVMPLMAEGKV---LPYLDVPLQHAHPDVL 287

Query: 304 KSMNRRHTAYEYRQIIDRIRSVR---PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
           K M R   A    + +DRIR+ R   P++ I S FI GFPGET+++F+  +D + +    
Sbjct: 288 KRMKRPANA---EKTLDRIRAWREVCPELTIRSTFIAGFPGETEEEFQTLLDFIGEAELD 344

Query: 361 QAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
           +   F YSP  G   +++   + + V+ ER     +             VG+ + VL+++
Sbjct: 345 RVGCFAYSPVEGATANDLPGALPDEVREERRARFMEVAERVSARRLQRKVGKTLRVLVDE 404

Query: 421 HGKEKGKLVGRS----PWLQSVVLNS------KNHNIGDIIKVRITDVKISTLYGEL 467
             ++ G  +GRS    P +  +V  +      K +  GD + V+IT      L+GE+
Sbjct: 405 VNQDGG--IGRSSADAPEIDGLVYIAPPSKPYKRYKTGDFVSVKITGADGHDLWGEV 459


>gi|313807488|gb|EFS45975.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes
           HL087PA2]
          Length = 474

 Score =  156 bits (394), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 133/465 (28%), Positives = 208/465 (44%), Gaps = 56/465 (12%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N  DS  +     + G+  V+   +A+ +V+NTC   E+A +     L    +L
Sbjct: 7   SMGCARNDVDSEELAARMEAGGFRLVDDPAEAETVVVNTCGFIEQAKKDSVDTLLAAADL 66

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYY----RLPELLERARF- 145
           K + I       VV  GC+A+  G E+    P  + V+G   Y     RL  +L+     
Sbjct: 67  KGNGITTS----VVAVGCMAERYGRELAESLPEADAVLGFDDYGDIAGRLRTILDGGSLE 122

Query: 146 -----GKRVVDTDYSVEDKFERLSIVDGGY------------------NRKR---GVTAF 179
                 +R +     V+    R  +   G+                   R+R   G +A 
Sbjct: 123 THVPRDRRTLLPISPVDRPTARAEVSVPGHGTAPDLSASVTPDSGPRATRRRLGTGPSAP 182

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
           L +  GCD+ C FC +P  RG  +SR ++++V+EAR L+D+GV E+ L+ +N +++ GK 
Sbjct: 183 LKMASGCDRRCAFCAIPRFRGSYLSRPIAEIVEEARWLVDHGVKEVFLVSENSSSY-GKD 241

Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
           L G+      LL +L ++ GL  +R +   P ++   LI      D ++PY  L  Q  S
Sbjct: 242 L-GDLRLLEKLLVNLDQVDGLEWIRVSYLQPAELRPGLIDTILATDKVVPYFDLSFQHAS 300

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
             +L+ M R   A  +  IID IRS  P+  + S+FI GFPGETD D     D + +   
Sbjct: 301 GPLLRRMRRFGDAESFLNIIDSIRSRCPEAGLRSNFITGFPGETDADVAVLADFLQRARL 360

Query: 360 AQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419
             A  F YS   GT  + +   VDE+V   R        RE      D  V Q  E  I 
Sbjct: 361 DVAGVFAYSDEEGTEAAGLDGHVDEDVVTAR--------REDLADLTDELVSQRAEDRIG 412

Query: 420 KHGKE-----KGKLVGRS----PWLQSVV--LNSKNHNIGDIIKV 453
             G+         ++GR+    P +   V  +++   ++GDI+ V
Sbjct: 413 TRGRVMVEEIDEAVIGRAEHQGPEVDGCVTLVDAAAVSVGDIVDV 457


>gi|116620691|ref|YP_822847.1| MiaB-like tRNA modifying enzyme YliG [Candidatus Solibacter
           usitatus Ellin6076]
 gi|122255158|sp|Q028J0|RIMO_SOLUE RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|116223853|gb|ABJ82562.1| MiaB-like tRNA modifying enzyme YliG [Candidatus Solibacter
           usitatus Ellin6076]
          Length = 465

 Score =  156 bits (394), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 126/454 (27%), Positives = 211/454 (46%), Gaps = 33/454 (7%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA-EKVYSFLGRIRN 89
           S GC  N+ DS  M     ++G+E  +  D AD++V+NTC   + A  E V + L     
Sbjct: 7   SLGCPKNLVDSEVMMGQLVAKGHELTSHPDQADVLVVNTCSFIDPAKKESVDTILEMAEY 66

Query: 90  LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149
            K  R K+     ++VAGC+ +    +I    P V+ ++G      + ++ E        
Sbjct: 67  KKIGRAKK-----LIVAGCLVERYRGDIRTEMPEVDALIGTNELDSIVDICEGMPPSTNP 121

Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209
           ++  Y   D   R+      +       A++ I EGCD  CTFCV+P  RG   SR    
Sbjct: 122 LEP-YLYHDLTPRVLATPRHF-------AYMKIAEGCDHPCTFCVIPQYRGAFRSRRFES 173

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR--LRYTT 267
           VV EA +L   G+ EI L+GQ+   + G+ L G K   ++LL  L++I+      +R+  
Sbjct: 174 VVSEATRLFQQGIREINLIGQDTTCY-GEDL-GLKDGLAELLARLAQIETPQEKWIRFLY 231

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
           ++P  ++  L+    +   L  Y+ +P+Q  S  +LK M R  +   + ++I+RIR   P
Sbjct: 232 AYPNKVTQKLLDTLAEHAALAKYIDMPLQHASANVLKRMKRGASGDIFLKLIERIRRTIP 291

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV- 386
            +AI + FIVGFPGET  DF      V+   +     F YS    +    +  +VD    
Sbjct: 292 GVAIRTSFIVGFPGETAADFDELCAFVEAAKFDNLGVFTYSDEDTSASYALDGKVDGRTI 351

Query: 387 --KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-----KGKLVGRSPWLQSVV 439
             +  RL+ +Q+K+   +   N   VG+ + VL+     E     + ++  ++P +  V 
Sbjct: 352 QNRKRRLMAIQRKIARAR---NRGLVGKEVPVLVSGVSGETDLLWEARMSTQAPEIDGVT 408

Query: 440 L----NSKNHNIGDIIKVRITDVKISTLYGELVV 469
           L           G+I ++RIT+     + G L+ 
Sbjct: 409 LINDFEGSEPRAGEIRRLRITEAHDYDVVGTLLA 442


>gi|58584362|ref|YP_197935.1| 2-methylthioadenine synthetase [Wolbachia endosymbiont strain TRS
           of Brugia malayi]
 gi|58418678|gb|AAW70693.1| 2-methylthioadenine synthetase [Wolbachia endosymbiont strain TRS
           of Brugia malayi]
          Length = 411

 Score =  156 bits (394), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 121/440 (27%), Positives = 221/440 (50%), Gaps = 33/440 (7%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V ++GC++N Y+S  +++    +  ER N      ++V+++C +  +A  +V   + +I 
Sbjct: 4   VVTFGCRLNFYESELIKEAL--RKAEREN------VVVVHSCAVTNEAERQVKQKIRKI- 54

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
             KN   KE     ++V GC  Q + E      P V+ V+G Q   +    L      K 
Sbjct: 55  -YKNDPNKE-----IIVVGCAVQLDPES-YSNIPGVSKVLGNQDKLKTENYL--LSNNKI 105

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           +V+ + + + +    +++D   ++ R   AF+ +Q GCD  CTFC +   RG   S  ++
Sbjct: 106 LVNDNQASKSE---PALIDKFKDKSR---AFIEVQNGCDHSCTFCSITEARGNNRSVPIN 159

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
            ++++ +  + NG  E+   G ++  + G  L G+      +   L ++  L RLR ++ 
Sbjct: 160 NIIEQIKIFVANGYQEVVFTGVDITDF-GTDLFGKPSLGLMVRRVLKDVPELKRLRLSSI 218

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
              ++ D L+    +    MP+LHL +QSG++ ILK M RRH+  +  +   +++S+R +
Sbjct: 219 DVAEVDDELMDLIVNESRFMPHLHLSLQSGNNLILKRMKRRHSREQVIEFCHKVKSLRSN 278

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           IA  +D I GFP ETD+ F+ T++L+++       +F YS R  TP + M  QV ENV+ 
Sbjct: 279 IAYGADIIAGFPTETDEMFQDTVNLLEETNTVYLHAFPYSKRKNTPAARM-PQVPENVRK 337

Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIG 448
           ER+  L+K  +    +F  + +G    VL+E++       +GR+     V   SK     
Sbjct: 338 ERVKNLRKINKAMMSNFYQSLIGTKQSVLVEQNN------IGRAENFALVKFTSKIQ-AK 390

Query: 449 DIIKVRITDVKISTLYGELV 468
            I+K  I  ++   L G ++
Sbjct: 391 SIVKATIIGMESGYLVGSII 410


>gi|329894523|ref|ZP_08270337.1| Ribosomal protein S12p Asp88 methylthiotransferase [gamma
           proteobacterium IMCC3088]
 gi|328923048|gb|EGG30373.1| Ribosomal protein S12p Asp88 methylthiotransferase [gamma
           proteobacterium IMCC3088]
          Length = 443

 Score =  156 bits (394), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 131/471 (27%), Positives = 209/471 (44%), Gaps = 64/471 (13%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P   FV S GC   + DS R+       GY    S + ADL+++NTC   + A ++    
Sbjct: 9   PTVGFV-SLGCPKALVDSERILTQLQQDGYAISGSYEGADLVIVNTCGFIDSAKQESLDA 67

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCV-AQAEGEEILRRSPIVNVVVGPQTY--------Y 134
           +G     +N R        V+V GC+ A  + + I    P V  V GP  Y        +
Sbjct: 68  IGEALA-ENGR--------VIVTGCMGAGDDAKRIQDLHPKVLSVTGPAAYEDVMTAVRH 118

Query: 135 RLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCV 194
            +P+  E   F   V D    +  +                  A+L I EGC+  C+FC+
Sbjct: 119 HVPKPQEHNPFIDLVPDHGIKLTPRH----------------YAYLKISEGCNHRCSFCI 162

Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGE 243
           +P+ RG  +SR    V+ EA  L+  GV E+ ++ Q+ +A           W G+ +  +
Sbjct: 163 IPHLRGDLVSRPAGDVMREAEALVRGGVRELLVVSQDTSAYGVDLKYKTDFWDGRPVKTQ 222

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
               S+ L SL      VR+ Y   +P   +   + A G +   +PYL +P Q  S  IL
Sbjct: 223 MLALSEALGSLGV---WVRMHYVYPYPHVDNVIPLMAEGKI---LPYLDIPFQHASHDIL 276

Query: 304 KSMNRRHTAYEYRQIIDRIRSVR---PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
           K+M R   A    +++DRI S R   PD+++ S FIVGFPGET+  F+  +D + +    
Sbjct: 277 KAMKRPAAA---EKVLDRIHSWRKVCPDLSLRSTFIVGFPGETETQFQELLDFISEAQLD 333

Query: 361 QAFSFKYSPRLGTPGSNMLEQVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVL 417
               F+YS   G P + +   V + VK    ER + LQ+ +  ++ +       Q+I   
Sbjct: 334 NVGCFQYSSVEGAPANALANPVADEVKQDRWERFMALQQTISAERRAAKIGTEQQLIIDH 393

Query: 418 IEKHGKEKGKLVGRSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGE 466
           ++  G   G+  G +P +  VV      ++  GD++   IT      L+ E
Sbjct: 394 VDSEGA-MGRTRGDAPEIDGVVHLPGYTDLRPGDLVTAEITGADEYDLWVE 443


>gi|323345215|ref|ZP_08085438.1| 2-methylthioadenine synthetase [Prevotella oralis ATCC 33269]
 gi|323093329|gb|EFZ35907.1| 2-methylthioadenine synthetase [Prevotella oralis ATCC 33269]
          Length = 452

 Score =  156 bits (394), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 110/399 (27%), Positives = 188/399 (47%), Gaps = 26/399 (6%)

Query: 33  GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92
           GC++N  ++     +    G       + AD+ ++NTC + E A  K    + R+     
Sbjct: 18  GCKLNFSETSTFGKLLQEYGVTNAADGERADICLINTCSVTEVADHKCRQAIHRM----- 72

Query: 93  SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDT 152
             +++     VVV GC AQ E E + +    V++V+G      L + L  A   K  + +
Sbjct: 73  --VRDNPGAFVVVTGCYAQLESETVSKIEG-VDLVLGSNEKANLVQRLNDAWLEKSTISS 129

Query: 153 DYSVEDKFERLSIVDG--------GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
                +       V            +R      FL +Q+GC+ FCT+C +PY RG   +
Sbjct: 130 ASGFNEHLHAFHSVKTKDIKTFAPSCSRGNRTRYFLKVQDGCNYFCTYCTIPYARGFSRN 189

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
            +++ +V++AR+ +  G  EI L G N+  +   G+   +  F DL+ +L +++G+ R R
Sbjct: 190 PTIASLVEQARQAVAEGGKEIVLTGVNIGDF---GVTTNE-RFIDLVKALDKVEGVKRYR 245

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
            ++  P  + D LI+        MP+ H+P+QSGSD +LK M+RR+    +   I  I+ 
Sbjct: 246 ISSLEPDLLDDELIEYCARSRAFMPHFHIPLQSGSDDVLKLMHRRYDRTLFAHKIQLIKE 305

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM---LEQ 381
             PD  I  D +VG  GE  + F    D +  +   Q   F YS R GT   ++   + +
Sbjct: 306 KMPDAFIGVDVMVGSRGERPEYFEDCYDFLRSLDITQLHVFPYSERPGTAALSIPYVVAE 365

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
            ++ ++++RLL L     E+  +F    +G   EVL EK
Sbjct: 366 KEKKLRSKRLLQLSD---EKMQAFYAKYIGTKAEVLFEK 401


>gi|302799254|ref|XP_002981386.1| hypothetical protein SELMODRAFT_52269 [Selaginella moellendorffii]
 gi|300150926|gb|EFJ17574.1| hypothetical protein SELMODRAFT_52269 [Selaginella moellendorffii]
          Length = 421

 Score =  156 bits (394), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 125/418 (29%), Positives = 195/418 (46%), Gaps = 44/418 (10%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
            FVK++GC  N  DS  M     + GY+     D+ADL ++NTC ++  +   + +    
Sbjct: 2   IFVKTFGCAHNQSDSEYMAGQLLAYGYKISEDPDEADLWLINTCTVKAPSQSAMETL--- 58

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           IR  K   I       +V+AGCV Q  G + L+    V+VV G Q   R+ E++E    G
Sbjct: 59  IRKGKAQTIP------LVIAGCVPQ--GSKDLKDLEGVSVV-GVQQIQRVVEVVEETLKG 109

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
             V     S       L  +D    RK      + I  GC   CT+C   + RG   S  
Sbjct: 110 HEVKLLRRST------LPSLDLPKVRKNKFVEIIPINVGCLGSCTYCKTKHARGHLGSYK 163

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAW-RGKGLDGEKCTFSDLLYSL-SEIK------ 258
           +  +V   + ++  GV EI L  ++  A+ R  G D        LL++L +E+       
Sbjct: 164 IEALVKRLQGVVSEGVTEIWLSSEDTGAYGRDIGTD-----IPTLLHALVAELPRDRSVM 218

Query: 259 ---GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
              G+    Y   H +++++ L         +  +LH+PVQSGSD +L +M R +T  E+
Sbjct: 219 LRIGMTNPPYILQHLKEIAEILRHP-----CVYSFLHVPVQSGSDSVLAAMKREYTVAEF 273

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
           +Q+ D +  + PDI I++D I GFPGET D+F  TM+L++   + Q    ++ PR GTP 
Sbjct: 274 KQVADTLIELVPDIHIATDIICGFPGETSDEFDKTMELIEHYKFPQVHISQFYPRPGTPA 333

Query: 376 SNMLEQVDENVKA-ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS 432
           + M       VK   RLL     L E    ++D   G++  V +     +   LVG +
Sbjct: 334 ARMKRVPTAEVKKRSRLLT---NLFESFTPYSDM-EGKVYRVWVTDTAADGIHLVGHT 387


>gi|317051390|ref|YP_004112506.1| MiaB-like tRNA modifying enzyme YliG [Desulfurispirillum indicum
           S5]
 gi|316946474|gb|ADU65950.1| MiaB-like tRNA modifying enzyme YliG [Desulfurispirillum indicum
           S5]
          Length = 440

 Score =  156 bits (394), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 122/455 (26%), Positives = 219/455 (48%), Gaps = 33/455 (7%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
            +  S GC  N+ D+ RM      +  + V+    AD+I +NTC     A ++  S +  
Sbjct: 4   LYTISLGCSKNLVDTERMLARLLRRPVDPVDDPAAADIIFINTCGFILDAKDESISTI-- 61

Query: 87  IRNLKNSRIKEGGDLLV-VVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA-- 143
              +++S+ K+ G   V +VAGC+     +++ +  P V++ +  +        +E    
Sbjct: 62  ---VEHSQFKQDGRCQVLIVAGCLVTLYEQQLRQELPEVDIFIDTKESS-----MESIGD 113

Query: 144 RFGKRVVDTDYSVEDKFERLS----IVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           +  +R+V+  ++ +D  E L     +    Y       A+L I EGC   CT+CV+P  R
Sbjct: 114 QLSRRLVN--FTPQDHLEALPGERLLTTPSY------MAYLKIAEGCSNTCTYCVIPRIR 165

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G   S    ++V EAR+L  +GV E+ L+ Q+   + G  L G++ + + LL  L++I+ 
Sbjct: 166 GPYQSVPQEKLVSEARELAASGVRELVLISQDSTEY-GLDLYGKR-SLAPLLAELAKIEN 223

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           L  +R   ++P    D LI+       +  Y+ +P Q  S+ +LK MNR     +   ++
Sbjct: 224 LHWIRVLYTYPNHFDDELIETIAREPKICKYVDIPFQHMSNSVLKRMNRHIRVEQMENLV 283

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            R+R   P IAI +  + GFPGET+ DF+A ++ V+++ +    +F YS         + 
Sbjct: 284 QRLRQRIPGIAIRTTMLTGFPGETEADFQALLEGVERVQFDHLGAFAYSDEELAASHKLP 343

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-----KGKLVGRSPW 434
            +V+ +   ER   L +      +  N+  VGQ  EVL+E   +E     +G+   ++P 
Sbjct: 344 GKVNPDTARERAEALMELQHSISLRRNEQRVGQTFEVLVEGISQETELLLQGRASFQAPE 403

Query: 435 LQS-VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           +   +++N    + GD + VRI       L G +V
Sbjct: 404 VDGHILINDGTAHPGDFVMVRIEQALPYDLVGGMV 438


>gi|126662084|ref|ZP_01733083.1| 2-methylthioadenine synthetase [Flavobacteria bacterium BAL38]
 gi|126625463|gb|EAZ96152.1| 2-methylthioadenine synthetase [Flavobacteria bacterium BAL38]
          Length = 433

 Score =  156 bits (394), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 127/452 (28%), Positives = 216/452 (47%), Gaps = 43/452 (9%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V + GC  N YDS  +     + G + V   ++ +++V+NTC   + A E+  + +    
Sbjct: 13  VITLGCSKNTYDSEVLMGQLKANGKD-VAHEEEGNIVVINTCGFIDNAKEESVNTILEYV 71

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
           + K+  + +     V V GC+++    ++ +  P V+   G      LP LL       +
Sbjct: 72  DKKDQGLVDK----VFVTGCLSERYRPDLEKEIPDVDQYFGTT---ELPLLL-------K 117

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
            +  DY  E   ERL+     Y       A+L I EGCD+ C+FC +P  RG  +S+ + 
Sbjct: 118 ALGADYKHELLGERLTTTPKNY-------AYLKIAEGCDRPCSFCAIPLMRGKHVSQPIE 170

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGL--VRLRY 265
           ++V EA  L   GV E+ L+ Q++  +   GLD  +K   ++LL +L++++G+  +RL Y
Sbjct: 171 KLVKEAEGLAKKGVKELILIAQDLTYY---GLDLYKKRNLAELLENLAKVEGIEWIRLHY 227

Query: 266 T--TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
              +  P D+ D + +       +  Y+ +P+Q  SD ILKSM R  T  +  +++   R
Sbjct: 228 AFPSGFPMDVLDLMKREPK----ICNYIDIPLQHISDNILKSMKRGTTKEKTTKLLQEFR 283

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              P +AI +  IVG+PGET +DF    D V ++ + +   F YS    T    + + V 
Sbjct: 284 ERVPGMAIRTTLIVGYPGETQEDFEILRDWVQEMKFERLGCFTYSHEENTGAFVLEDDVP 343

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVV 439
           + VK  R   +     +     N   +GQ  + +I++  KE    +GR    SP + + V
Sbjct: 344 QEVKQARAAEIMDLQSQISWDLNQEKIGQTFKCVIDR--KEGQYFIGRTEFDSPDVDNEV 401

Query: 440 LNSKNH---NIGDIIKVRITDVKISTLYGELV 468
           L   +      GD + ++ITD     LY E V
Sbjct: 402 LVDASKFYLKTGDFVNLKITDATEFDLYAEPV 433


>gi|313825174|gb|EFS62888.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes
           HL063PA1]
 gi|314978454|gb|EFT22548.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes
           HL072PA2]
 gi|315088894|gb|EFT60870.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes
           HL072PA1]
 gi|327331966|gb|EGE73703.1| Fe-S oxidoreductase [Propionibacterium acnes HL096PA3]
          Length = 474

 Score =  156 bits (394), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 133/465 (28%), Positives = 208/465 (44%), Gaps = 56/465 (12%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N  DS  +     + G+  V+   +A+ +V+NTC   E+A +     L    +L
Sbjct: 7   SMGCARNDVDSEELAARMEAGGFRLVDDPAEAETVVVNTCGFIEQAKKDSVDTLLAAADL 66

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYY----RLPELLERARF- 145
           K + I       VV  GC+A+  G E+    P  + V+G   Y     RL  +L+     
Sbjct: 67  KGNGITTS----VVAVGCMAERYGRELAESLPEADAVLGFDDYGDIAGRLRTILDDGSLE 122

Query: 146 -----GKRVVDTDYSVEDKFERLSIVDGGY------------------NRKR---GVTAF 179
                 +R +     V+    R  +   G+                   R+R   G +A 
Sbjct: 123 THVPRDRRTLLPISPVDRPTARAEVSVPGHGTAPDLSASVTPDSGPRATRRRLGTGPSAP 182

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
           L +  GCD+ C FC +P  RG  +SR ++++V+EAR L+D+GV E+ L+ +N +++ GK 
Sbjct: 183 LKMASGCDRRCAFCAIPRFRGSYLSRPIAEIVEEARWLVDHGVKEVFLVSENSSSY-GKD 241

Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
           L G+      LL +L ++ GL  +R +   P ++   LI      D ++PY  L  Q  S
Sbjct: 242 L-GDLRLLEKLLVNLDQVDGLEWIRVSYLQPAELRPGLIDTILATDKVVPYFDLSFQHAS 300

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
             +L+ M R   A  +  IID IRS  P+  + S+FI GFPGETD D     D + +   
Sbjct: 301 GPLLRRMRRFGDAESFLNIIDSIRSRCPEAGLRSNFITGFPGETDADVAVLADFLQRARL 360

Query: 360 AQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419
             A  F YS   GT  + +   VDE+V   R        RE      D  V Q  E  I 
Sbjct: 361 DVAGVFAYSDEEGTEAAGLDGHVDEDVVTAR--------REDLADLTDELVSQRAEDRIG 412

Query: 420 KHGKE-----KGKLVGRS----PWLQSVV--LNSKNHNIGDIIKV 453
             G+         ++GR+    P +   V  +++   ++GDI+ V
Sbjct: 413 TRGRVMVEEIDEAVIGRAEHQGPEVDGCVTLVDAAAVSVGDIVDV 457


>gi|34557848|ref|NP_907663.1| 2-methylthioadenine synthetase [Wolinella succinogenes DSM 1740]
 gi|34483566|emb|CAE10563.1| conserved hypothetical protein-2-methylthioadenine synthetase
           [Wolinella succinogenes]
          Length = 416

 Score =  156 bits (394), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 121/433 (27%), Positives = 213/433 (49%), Gaps = 38/433 (8%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+ +F K++GC+ N++D+  M      Q +E     + AD++V+N+C +   A   V S+
Sbjct: 4   PKVYF-KTFGCRTNLFDTQIMIKNL--QNFELTEIEESADIVVVNSCTVTNGADSGVRSY 60

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           L R+++       EG    V + GC     GEEI  +  +   V G     ++  LL + 
Sbjct: 61  LHRLKS-------EGKR--VYLTGCGVLTRGEEIFTQE-LAFGVFGHSYKEQIDSLLSQ- 109

Query: 144 RFGKRVVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
                   T +S +   E +  +++     + R   AF+ +QEGCD  C++C++P  RG 
Sbjct: 110 -------KTRFSFKGDLEHIDSTVITEFIGKSR---AFVKVQEGCDFSCSYCIIPSVRGK 159

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-RGKGLDGEKCTFSDLLYSLSEIKGL 260
             S  + ++V +   L  +G  E  L G NV ++ +  GL+  K     LL +LS+IKG+
Sbjct: 160 ARSLPVDRIVSQVEILAQHGFGEFVLTGTNVGSYGKESGLNVAK-----LLKALSQIKGV 214

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            RLR  +  P  + D       +   +  +LH+ +Q  S ++L+ MNRR+ A     + +
Sbjct: 215 KRLRLGSLEPSQI-DAEFMELLEEPFMARHLHIALQHTSPKMLQIMNRRNEAQGDLALFE 273

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           R+   +   A+ +DFI+G PGE+++ ++   +           +F YSPR GTP S M +
Sbjct: 274 RL--AQKGYALGTDFILGHPGESEEVWKEAWERFVAFPLTHLHAFVYSPREGTPSSLMKD 331

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440
           ++  N+  ER+  LQ+++RE    F     G+ + VLIE   +E G   G   +   + +
Sbjct: 332 RISGNIAKERMRILQERVRENNHHFRQK--GEKLWVLIESE-REGGLYQGLDQFFNRIEI 388

Query: 441 NSKNHNIGDIIKV 453
            S +   G  ++V
Sbjct: 389 RSSDSLAGRWLEV 401


>gi|327314071|ref|YP_004329508.1| tRNA methylthiotransferase YqeV [Prevotella denticola F0289]
 gi|326945694|gb|AEA21579.1| tRNA methylthiotransferase YqeV [Prevotella denticola F0289]
          Length = 450

 Score =  156 bits (394), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 117/408 (28%), Positives = 189/408 (46%), Gaps = 23/408 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           RF+  + GC++N  ++       ++ G       + AD+ ++NTC + E A  K    + 
Sbjct: 13  RFY--TLGCKLNFSETSTFARTLYNMGVREAKKSEKADICLINTCSVTEVADHKCRQVIH 70

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE---- 141
           R+       +++     V+V GC AQ E   +      V++V+G      L + L     
Sbjct: 71  RM-------VRQNPGAFVIVTGCYAQLESAAVAGIEG-VDLVLGSNEKADLIQYLSDAWN 122

Query: 142 RARFGKR--VVDTDY-SVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
           R   GK       +Y SV  K   +       +R      FL +Q+GC  FCT+C +PY 
Sbjct: 123 RPEAGKEHGASPAEYHSVRTK--DIRSFQPSCSRGNRTRYFLKVQDGCSYFCTYCTIPYA 180

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258
           RG   + +++ +V +A +    G  EI L G N+  +      GE+  F DL+ +L  ++
Sbjct: 181 RGFSRNPTIASLVSQAEEAAHEGGREIVLTGVNIGDF--GETTGER--FLDLVKALDRVE 236

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           G+ R R ++  P  + D LI         MP+ H+P+QSGSD +LK M+RR+    +   
Sbjct: 237 GIRRYRISSLEPDLIDDELIAYCAQSRAFMPHFHIPLQSGSDEVLKLMHRRYDTALFAHK 296

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           I  I+ + PD  I  D +VG  GE  + F    + ++ +   Q   F YS R GT   ++
Sbjct: 297 IRLIKEMMPDAFIGVDVMVGSRGERPEYFEDCYNFLESLPVTQLHVFPYSERPGTSALSI 356

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG 426
              VD+  K  R   L K   E+  +F  A +GQ  +VL EK  + K 
Sbjct: 357 PYVVDDREKKRRSHRLLKLSDEKTHAFYAAHIGQEADVLFEKAPRGKA 404


>gi|50842489|ref|YP_055716.1| radical SAM superfamily protein [Propionibacterium acnes KPA171202]
 gi|289425326|ref|ZP_06427103.1| ribosomal protein S12 methylthiotransferase RimO [Propionibacterium
           acnes SK187]
 gi|295130566|ref|YP_003581229.1| ribosomal protein S12 methylthiotransferase RimO [Propionibacterium
           acnes SK137]
 gi|81611817|sp|Q6A908|RIMO_PROAC RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|50840091|gb|AAT82758.1| conserved protein, radical SAM superfamily protein
           [Propionibacterium acnes KPA171202]
 gi|289154304|gb|EFD02992.1| ribosomal protein S12 methylthiotransferase RimO [Propionibacterium
           acnes SK187]
 gi|291375633|gb|ADD99487.1| ribosomal protein S12 methylthiotransferase RimO [Propionibacterium
           acnes SK137]
 gi|332675406|gb|AEE72222.1| ribosomal protein S12 methylthiotransferase RimO [Propionibacterium
           acnes 266]
          Length = 481

 Score =  155 bits (393), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 133/465 (28%), Positives = 208/465 (44%), Gaps = 56/465 (12%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N  DS  +     + G+  V+   +A+ +V+NTC   E+A +     L    +L
Sbjct: 14  SMGCARNDVDSEELAARMEAGGFRLVDDPAEAETVVVNTCGFIEQAKKDSVDTLLAAADL 73

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYY----RLPELLERARF- 145
           K + I       VV  GC+A+  G E+    P  + V+G   Y     RL  +L+     
Sbjct: 74  KGNGITTS----VVAVGCMAERYGRELAESLPEADAVLGFDDYGDIAGRLRTILDGGSLE 129

Query: 146 -----GKRVVDTDYSVEDKFERLSIVDGGY------------------NRKR---GVTAF 179
                 +R +     V+    R  +   G+                   R+R   G +A 
Sbjct: 130 THVPRDRRTLLPISPVDRPTARAEVSVPGHGTAPDLSASVTPDSGPRATRRRLGTGPSAP 189

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
           L +  GCD+ C FC +P  RG  +SR ++++V+EAR L+D+GV E+ L+ +N +++ GK 
Sbjct: 190 LKMASGCDRRCAFCAIPRFRGSYLSRPIAEIVEEARWLVDHGVKEVFLVSENSSSY-GKD 248

Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
           L G+      LL +L ++ GL  +R +   P ++   LI      D ++PY  L  Q  S
Sbjct: 249 L-GDLRLLEKLLVNLDQVDGLEWIRVSYLQPAELRPGLIDTILATDKVVPYFDLSFQHAS 307

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
             +L+ M R   A  +  IID IRS  P+  + S+FI GFPGETD D     D + +   
Sbjct: 308 GPLLRRMRRFGDAESFLNIIDSIRSRCPEAGLRSNFITGFPGETDADVAVLADFLQRARL 367

Query: 360 AQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419
             A  F YS   GT  + +   VDE+V   R        RE      D  V Q  E  I 
Sbjct: 368 DVAGVFAYSDEEGTEAAGLDGHVDEDVVTAR--------REDLADLTDELVSQRAEDRIG 419

Query: 420 KHGKE-----KGKLVGRS----PWLQSVV--LNSKNHNIGDIIKV 453
             G+         ++GR+    P +   V  +++   ++GDI+ V
Sbjct: 420 TRGRVMVEEIDEAVIGRAEHQGPEVDGCVTLVDAAAVSVGDIVDV 464


>gi|74003948|ref|XP_545362.2| PREDICTED: similar to CDK5 regulatory subunit associated protein
           1-like 1 isoform 1 [Canis familiaris]
          Length = 557

 Score =  155 bits (393), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 119/430 (27%), Positives = 201/430 (46%), Gaps = 47/430 (10%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           Q+ +++++GC  N  D   M     + GYE   +  +ADL +LN+C ++  A +    F 
Sbjct: 63  QKIWMRTWGCSHNNSDGEYMAGQLAAYGYEITENASEADLWLLNSCTVKNPAEDH---FR 119

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             I+  +    K      +V+AGCV QA+  +   +      ++G Q   R+ E++E   
Sbjct: 120 NSIKKAQEENKK------IVLAGCVPQAQPRQDYFKG---LSIIGVQQIDRVVEVVEETI 170

Query: 145 FGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            G  V +        K    + +D    RK  +   +++  GC   CT+C   + RG   
Sbjct: 171 KGHSVRLLGQKKANGKRLGGARLDLPKIRKNPLIEIISVNTGCLNACTYCKTKHARGNLA 230

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI------ 257
           S  + ++V+ A++    GVCEI L  ++  A+ G+ +         LL+ L E+      
Sbjct: 231 SYPIDELVERAKQSFQEGVCEIWLTSEDTGAY-GRDIG---TNLPALLWKLVEVIPEGAM 286

Query: 258 --KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
              G+    Y   H  +M+  L     +   +  +LH+PVQS SD +L  M R +   ++
Sbjct: 287 LRLGMTNPPYILEHLEEMAKIL-----NHPRVYAFLHIPVQSASDTVLMEMKREYCVADF 341

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
           ++++D ++   P I +++D I GFPGETD DF+ T+ LV+   +   F  ++ PR GTP 
Sbjct: 342 KRVVDFLKEKVPGITLATDIICGFPGETDQDFQETVKLVEDYKFPSLFINQFYPRPGTPA 401

Query: 376 SNMLEQVDENVKAERLLCL-------------QKKLREQ-QVSFNDACVGQIIEVLIEKH 421
           + M+ QV   V  ER   L               +  EQ  V  N   +G++IEV I + 
Sbjct: 402 AKMV-QVPAQVIGERQQVLVTEESFDSKFYVAHNRFYEQVLVPKNPTFMGKMIEVDIYES 460

Query: 422 GKE--KGKLV 429
           GK   KG+ V
Sbjct: 461 GKHFMKGQPV 470


>gi|224372902|ref|YP_002607274.1| hypothetical protein NAMH_0871 [Nautilia profundicola AmH]
 gi|223589641|gb|ACM93377.1| conserved hypothetical protein [Nautilia profundicola AmH]
          Length = 408

 Score =  155 bits (393), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 113/438 (25%), Positives = 226/438 (51%), Gaps = 43/438 (9%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + F+K++GC+ N+YDS  M+++   Q  E V S ++AD+I++N+C +   A   +  ++ 
Sbjct: 2   KIFIKTFGCRSNLYDSEVMKNIL-KQNAEIVYSENEADIIIVNSCTVTNFADRDLRQYIN 60

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER--A 143
           + ++ KN          +++ GC A  +GEE+ ++   V  V+G    ++  E +++  A
Sbjct: 61  KWQS-KN----------IMLTGCAAYTQGEELFKQGK-VKTVLG----HKYKETIDKYIA 104

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             G  + D D+  +        +   Y + +   AF+ IQEGCD  C +C++P  RG   
Sbjct: 105 FQGVELGDFDFINQK-------IITEYTKAK---AFVKIQEGCDFECAYCIIPSVRG--H 152

Query: 204 SRSLSQ--VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           SRSL +  ++++ + L  NG+ E  L G N+ ++ GK  +    T S+L+  +S+I+G+ 
Sbjct: 153 SRSLPENIILEQIKTLSQNGISEFVLTGINMGSY-GKDTN---TTLSELIEKISKIRGVK 208

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R  +  P  + + LI+   +  +L  +LH+ +Q  SDR+L+ M RR+   +  ++ + 
Sbjct: 209 RIRLGSLEPSQLDERLIELTQN-GILEKHLHIALQHTSDRMLRIMKRRNRVKQTLELFEN 267

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +      IA+ +DFIVG PGET++ ++  +    K        F+++PR GT  + + + 
Sbjct: 268 L--ANKGIALGTDFIVGHPGETEEIWQEALKNFKKYPLTHIHIFRFTPRDGTHSATLTQN 325

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           V  +V  +R   L + ++    +F    +   I + +     + G   G   +   +++ 
Sbjct: 326 VKGDVAKKRAKILDEIVKRNNYNFR---IKNKIPLTVHVENYKNGFYEGYDEFYNRMMIK 382

Query: 442 SKNHNIGDIIKVRITDVK 459
           S  +  G+ +K+   ++K
Sbjct: 383 SDKNIKGNWMKINDYEIK 400


>gi|281425611|ref|ZP_06256524.1| RNA modification enzyme, MiaB-family [Prevotella oris F0302]
 gi|281400198|gb|EFB31029.1| RNA modification enzyme, MiaB-family [Prevotella oris F0302]
          Length = 433

 Score =  155 bits (393), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 124/452 (27%), Positives = 211/452 (46%), Gaps = 43/452 (9%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEKVYSFLGRIR 88
           + GC  N+ DS  +   F + GY  V+     D ++ V+NTC   E A E+  + +    
Sbjct: 10  TMGCSKNLVDSEHLMKQFEANGYHCVHDSKRPDGEIAVINTCGFIESAKEESINTILEFV 69

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF--- 145
           + KN    EG    + V GC++Q   +E+ +  P V+   G   Y +L   L +A     
Sbjct: 70  HAKN----EGRLKRLYVMGCLSQRYKDELEKEIPEVDKFYGKFNYKQLLTDLGKAEVPSC 125

Query: 146 -GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G+R + T                         A++ I EGCD+ C +C +P   G  +S
Sbjct: 126 NGRRHLTTPRHY---------------------AYVKIAEGCDRHCAYCAIPLITGKHVS 164

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R    ++ E R+L+ +GV E  ++ Q +  + G  +DG++   +DL+  +++IKG+  +R
Sbjct: 165 RPKEDILQEVRELVSDGVKEFQIIAQELTYY-GVDIDGQR-HIADLISDMADIKGVKWIR 222

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
              ++P      L+    +   +  YL + +Q  S+ +L +M+R  +  E  ++I +IR 
Sbjct: 223 LHYAYPNQFPLELLDVIREKPNVCKYLDIALQHISNHMLNAMHRHVSKEETIELIKKIRE 282

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE-QVD 383
             P I I +  +VGFP ET++DF   ++ V    + +  +F YS   GT  +N  E  V 
Sbjct: 283 AVPGIHIRTTLLVGFPDETEEDFNELVEFVKWAKFERMGAFAYSEEEGTYSANHYEDDVP 342

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVV 439
             VK  RL  L    +E         VG++++V+I++  KE    +GR    SP +   V
Sbjct: 343 AEVKQHRLDTLMAIQQEISADVEAEKVGKVMKVIIDR--KEGDYYIGRTEFCSPEVDPEV 400

Query: 440 LNSKNH---NIGDIIKVRITDVKISTLYGELV 468
           L         +G+   V ITD +   LYG +V
Sbjct: 401 LIPTAGVRLRVGNFYDVEITDSEEFDLYGHVV 432


>gi|171463614|ref|YP_001797727.1| MiaB-like tRNA modifying enzyme YliG [Polynucleobacter necessarius
           subsp. necessarius STIR1]
 gi|238066438|sp|B1XUT6|RIMO_POLNS RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|171193152|gb|ACB44113.1| MiaB-like tRNA modifying enzyme YliG [Polynucleobacter necessarius
           subsp. necessarius STIR1]
          Length = 452

 Score =  155 bits (393), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 129/469 (27%), Positives = 216/469 (46%), Gaps = 59/469 (12%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC   + DS  +     ++GY+       ADL+V+NTC   + A E+  S +G     
Sbjct: 9   SLGCPKALVDSELILTQLSAEGYKTAKDYSGADLVVVNTCGFIDSAVEESLSAIGEA--- 65

Query: 91  KNSRIKEGGDLLVVVAGCVA---QAEGEEILRR-SPIVNVVVGPQTYYRLPELLERARFG 146
               + E G   V+V GC+     A+G +++    P V  V GP     + +++      
Sbjct: 66  ----LAENGK--VIVTGCLGARKNADGSDLIHSIHPKVLAVTGPHATDEVMQVIHLHLPK 119

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
              + TD        R+ +    Y       A+L I EGC+  CTFC++P  RG  +SR 
Sbjct: 120 PHDLYTDLVPS---ARVRLTPKHY-------AYLKISEGCNHRCTFCIIPNLRGDLVSRP 169

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYSLS 255
           +  V+ E ++L ++GV E+ ++ Q+ +A           W GK +   K    DL+ +L+
Sbjct: 170 IGDVLLEVKRLFESGVKELLVVSQDTSAYGVDIQYRTGFWDGKPV---KTKMFDLVNTLN 226

Query: 256 EI----KGLVRLRYTTSHPRDMSDCL-----IKAHGDLDVLMPYLHLPVQSGSDRILKSM 306
           +I    +  VRL Y   +P  + D L        HG    ++PYL +P+Q     +LK M
Sbjct: 227 QIAREHQAWVRLHYVYPYPH-VDDILPLMAEFAEHGY--GVLPYLDIPLQHAHPDVLKKM 283

Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
            R  +  +  + I   R   PD+ I S FI GFPGET+ +F   ++ +D+    +A  F 
Sbjct: 284 KRPASGEKNLERILAWREACPDLVIRSTFIAGFPGETEGEFEYLLNFLDEAQIDRAGCFA 343

Query: 367 YSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK---HGK 423
           YSP  G   + +   V + ++ +R   L  K  E  V      +G+ ++V+I++   HG 
Sbjct: 344 YSPVDGATANELANPVPDQIREDRRARLMAKAEEISVGRLAKKIGKRLQVIIDRVDDHGG 403

Query: 424 EKGKLVGRSPWLQSVVL------NSKNHNIGDIIKVRITDVKISTLYGE 466
             G+ +G +P +  +V        SK +  G+II+V +   +   L  E
Sbjct: 404 -IGRTIGDAPEIDGLVRVLPANKPSKRYRAGEIIRVTVISSQGHDLIAE 451


>gi|145589109|ref|YP_001155706.1| MiaB-like tRNA modifying enzyme YliG [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
 gi|238066599|sp|A4SXC8|RIMO_POLSQ RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|145047515|gb|ABP34142.1| SSU ribosomal protein S12P methylthiotransferase [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
          Length = 452

 Score =  155 bits (393), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 128/473 (27%), Positives = 213/473 (45%), Gaps = 67/473 (14%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC   + DS  +     ++GYE       ADL+V+NTC   + A E+  S +G     
Sbjct: 9   SLGCPKALVDSELILTQLSAEGYETAKDYSGADLVVVNTCGFIDSAVEESLSAIGEA--- 65

Query: 91  KNSRIKEGGDLLVVVAGCVA---QAEGEE-ILRRSPIVNVVVGPQT--------YYRLPE 138
               + E G   V+V GC+     A+G + IL   P V  V GP          +  LP+
Sbjct: 66  ----LAENGK--VIVTGCLGARKNADGSDLILSIHPKVLAVTGPHATDEVMQAIHLHLPK 119

Query: 139 LLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
                              D F  L +   G        A+L I EGC+  CTFC++P  
Sbjct: 120 -----------------PHDPFTDL-VPPAGVKLTPKHYAYLKISEGCNHRCTFCIIPSL 161

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTF 247
           RG  +SR + +V+ EA++L ++GV E+ ++ Q+ +A           W GK +   K   
Sbjct: 162 RGDLVSRPIGEVLLEAKRLFESGVKELLVVSQDTSAYGVDIQYRTGFWDGKPV---KTRM 218

Query: 248 SDLLYSLSEI----KGLVRLRYTTSHPR--DMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
            DL+ +L++I    +  VRL Y   +P   D+   + +       ++PYL +P+Q     
Sbjct: 219 FDLVNALNQIAREHQAWVRLHYVYPYPHVDDILPLMAEFSEHGYGVLPYLDIPLQHAHPD 278

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
           +LK M R  +  +  + I   R   PD+ I S FI GFPGET+++F   ++ +++    +
Sbjct: 279 VLKRMKRPASGEKNLERILAWREACPDLVIRSTFIAGFPGETEEEFEYLLNFLEEAQIDR 338

Query: 362 AFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKH 421
           A  F YSP  G   + +   V + V+ ER      K  +  +      +G+ ++VLI++ 
Sbjct: 339 AGCFAYSPVEGAKANELDNPVPDAVREERRARFMAKAEDISIKRLAKKIGKRVQVLIDRV 398

Query: 422 GKEK--GKLVGRSPWLQSVVL------NSKNHNIGDIIKVRITDVKISTLYGE 466
            +    G+ +G +P +  +V        SK +  G+II+  +   +   L  E
Sbjct: 399 DESGGIGRTIGDAPEIDGLVRVLPPTKPSKRYRTGEIIRATVISSQGHDLIAE 451


>gi|299140666|ref|ZP_07033804.1| 2-methylthioadenine synthetase [Prevotella oris C735]
 gi|298577632|gb|EFI49500.1| 2-methylthioadenine synthetase [Prevotella oris C735]
          Length = 446

 Score =  155 bits (393), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 114/406 (28%), Positives = 191/406 (47%), Gaps = 31/406 (7%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N  ++     M    G       ++AD+ ++NTC + + A  K    + R+   
Sbjct: 16  TLGCKLNFSETSTFGKMLSDMGVVTAAKGEEADICLINTCSVTDVADHKCRQAIHRM--- 72

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               ++E     ++V GC AQ E E +  + P V++V+G      L + L  A F  R  
Sbjct: 73  ----VRENPGAFIIVTGCYAQLESERV-SKIPGVDLVLGSNEKANLIQYLNDA-FIDRTA 126

Query: 151 DTDYSVEDKFERLSIVD-----GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            T    + K+  +   D        +R      FL +Q+GC+ FCT+C +PY RG   + 
Sbjct: 127 GT---AQHKYHAVRTKDIKTFQASCSRGNRTRYFLKVQDGCNYFCTYCTIPYARGFSRNP 183

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC--TFSDLLYSLSEIKGLVRL 263
           S++ +V +A +    G  EI L G N+  +      GE     F DL+ +L +++G+ R 
Sbjct: 184 SIASLVAQAEEAAAEGGKEIVLTGVNIGHF------GETTHEKFIDLVKALDKVEGIKRF 237

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R ++  P  + D LI    +    MP+ H+P+QSGSD +LK M+R +    +   I+ I+
Sbjct: 238 RISSLEPDLIDDDLIAFCAESRAFMPHFHIPLQSGSDAVLKLMHRLYDTALFAHKIELIK 297

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM---LE 380
            + PD  I  D +VG  GE  + F      +  +   Q   F YS R GT   ++   +E
Sbjct: 298 KLMPDAFIGVDVMVGSRGEKPEYFEDCYQFLAHLPVTQLHVFPYSERPGTSALSIPYVVE 357

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG 426
           + D+ ++++RLL L      +   F    +G   EVL EK  + K 
Sbjct: 358 EKDKKLRSKRLLALSDT---KTQDFYQQFIGTEREVLFEKAPRGKA 400


>gi|291515240|emb|CBK64450.1| SSU ribosomal protein S12P methylthiotransferase [Alistipes shahii
           WAL 8301]
          Length = 432

 Score =  155 bits (393), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 123/459 (26%), Positives = 215/459 (46%), Gaps = 43/459 (9%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEKVYS 82
           ++  V + GC  N  DS  +     + GYE +   D  DA ++V+NTC     A ++   
Sbjct: 2   KKINVITLGCSKNTVDSEHLMARLAAAGYEVLFDSDRTDAKVVVINTCGFIGDAKQESID 61

Query: 83  FLGRIRNLKNSRIKEGGDL-LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
            +     L+ +  K+ G +  + V GC+++   +E+    P V+   G +T+  +   L 
Sbjct: 62  MI-----LRAAAAKQAGKIERLFVVGCLSERYADELRAEIPEVDDYFGARTWDGIVRALG 116

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
            +       +   +    +                 A+L I EGC+  C +C +P  RG 
Sbjct: 117 ASEDPALATERRLTTPKHY-----------------AYLKISEGCNWKCGYCAIPLIRGA 159

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
            +S  + ++ +EARKL   GV E+ ++ Q+   + G  L G +   ++LL  L  I G+ 
Sbjct: 160 HVSVPMEELEEEARKLAGQGVRELMVIAQDTTYY-GIDLYGRR-MLAELLRRLCRIDGIE 217

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
            +R   ++P    D +I+A      +  YL +P Q  SD  L SM+RRHT  E  ++I R
Sbjct: 218 WIRLHYAYPAGFPDEVIEAMASEPKICKYLDIPFQHISDAQLASMHRRHTKAEAMELIGR 277

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT-PGSNMLE 380
           +R   PD+A+ +  +VG+PGET+ DF   +  V ++ + +   F YS   GT    N+ +
Sbjct: 278 LRGAIPDLALRTTLLVGYPGETEADFEELLAFVREVRFERLGVFPYSEEEGTWSAENLRD 337

Query: 381 QVDENVK---AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SP 433
            + E +K   AER++ LQ ++    +  N   VG+   V+I+   ++    VGR    SP
Sbjct: 338 DIPETIKQQRAERVMALQNEI---SLENNRRRVGRTERVIID--SRQGDWYVGRTQYDSP 392

Query: 434 WL-QSVVLNSKNHNI--GDIIKVRITDVKISTLYGELVV 469
            + Q +++ +    +  G    V +T      LYGE+  
Sbjct: 393 EVDQEILIPASERRLLRGHFYDVTVTSAADYDLYGEIAA 431


>gi|241206754|ref|YP_002977850.1| MiaB-like tRNA modifying enzyme [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240860644|gb|ACS58311.1| MiaB-like tRNA modifying enzyme [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 424

 Score =  155 bits (393), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 118/402 (29%), Positives = 185/402 (46%), Gaps = 34/402 (8%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V ++GC++N Y+S  M+      G          + I++NTC +  +A  +         
Sbjct: 6   VITFGCRLNTYESEVMKAQAEKAGLN--------NAILVNTCAVTGEAVRQARQ------ 51

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ------TYYRLPELLER 142
                  ++     ++V GC AQ E +     +  V+ V+G +      +Y  LP+    
Sbjct: 52  -AIRRARRDNPHARIIVTGCAAQTEKQTFAAMAE-VDAVLGNEEKLTTASYRGLPDFGVS 109

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           A    RV D         + +  +DG       V AF+ +Q GCD  CTFC++PY RG  
Sbjct: 110 AEEKLRVNDIMSVKATAPQMVRHIDGH------VRAFIQVQNGCDHRCTFCIIPYGRGNS 163

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS--LSEIKGL 260
            S  +  VVD+ARKL+D G  EI L G +  ++   G D        LL    L +I  +
Sbjct: 164 RSVPMGAVVDQARKLVDGGYREIVLTGVDATSY---GCDLPGAPTLGLLAKTLLKQIPDI 220

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            RLR ++    +    L+    D    MP+LHL +Q G D ILK M RRH   +  + I+
Sbjct: 221 RRLRLSSIDSIEADAHLMDLIADEPRFMPHLHLSLQHGDDMILKRMKRRHLRADALRFIE 280

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
             R +RP+++  +D I GFP ET++ F   + L ++   A    F YS R GTP + M  
Sbjct: 281 DARRLRPEMSFGADMIAGFPTETEEMFDNAVRLAEEANIAHLHVFPYSLRPGTPAARM-P 339

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422
           Q+D ++  +R   L+        S  D  +G    +L+E +G
Sbjct: 340 QLDRSLVKDRAAKLRAAGHRLHQSHLDRMIGTRQWLLVENNG 381


>gi|313772133|gb|EFS38099.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes
           HL074PA1]
 gi|313792172|gb|EFS40273.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes
           HL110PA1]
 gi|313801877|gb|EFS43111.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes
           HL110PA2]
 gi|313809997|gb|EFS47718.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes
           HL083PA1]
 gi|313812971|gb|EFS50685.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes
           HL025PA1]
 gi|313816023|gb|EFS53737.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes
           HL059PA1]
 gi|313818532|gb|EFS56246.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes
           HL046PA2]
 gi|313820299|gb|EFS58013.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes
           HL036PA1]
 gi|313822893|gb|EFS60607.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes
           HL036PA2]
 gi|313827747|gb|EFS65461.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes
           HL063PA2]
 gi|313830325|gb|EFS68039.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes
           HL007PA1]
 gi|313833700|gb|EFS71414.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes
           HL056PA1]
 gi|313838703|gb|EFS76417.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes
           HL086PA1]
 gi|314925185|gb|EFS89016.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes
           HL036PA3]
 gi|314960031|gb|EFT04133.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes
           HL002PA2]
 gi|314962830|gb|EFT06930.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes
           HL082PA1]
 gi|314967803|gb|EFT11902.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes
           HL037PA1]
 gi|314973330|gb|EFT17426.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes
           HL053PA1]
 gi|314976008|gb|EFT20103.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes
           HL045PA1]
 gi|314983972|gb|EFT28064.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes
           HL005PA1]
 gi|314988155|gb|EFT32246.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes
           HL005PA2]
 gi|314989959|gb|EFT34050.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes
           HL005PA3]
 gi|315078046|gb|EFT50097.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes
           HL053PA2]
 gi|315084343|gb|EFT56319.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes
           HL027PA2]
 gi|315085685|gb|EFT57661.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes
           HL002PA3]
 gi|315096245|gb|EFT68221.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes
           HL038PA1]
 gi|315098507|gb|EFT70483.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes
           HL059PA2]
 gi|315105412|gb|EFT77388.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes
           HL030PA1]
 gi|315108356|gb|EFT80332.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes
           HL030PA2]
 gi|327326158|gb|EGE67948.1| Fe-S oxidoreductase [Propionibacterium acnes HL096PA2]
 gi|327443168|gb|EGE89822.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes
           HL013PA2]
 gi|327445955|gb|EGE92609.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes
           HL043PA2]
 gi|327448066|gb|EGE94720.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes
           HL043PA1]
 gi|327453111|gb|EGE99765.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes
           HL092PA1]
 gi|328753499|gb|EGF67115.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes
           HL020PA1]
 gi|328760620|gb|EGF74187.1| Fe-S oxidoreductase [Propionibacterium acnes HL099PA1]
          Length = 474

 Score =  155 bits (393), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 133/465 (28%), Positives = 208/465 (44%), Gaps = 56/465 (12%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N  DS  +     + G+  V+   +A+ +V+NTC   E+A +     L    +L
Sbjct: 7   SMGCARNDVDSEELAARMEAGGFRLVDDPAEAETVVVNTCGFIEQAKKDSVDTLLAAADL 66

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYY----RLPELLERARF- 145
           K + I       VV  GC+A+  G E+    P  + V+G   Y     RL  +L+     
Sbjct: 67  KGNGITTS----VVAVGCMAERYGRELAESLPEADAVLGFDDYGDIAGRLRTILDGGSLE 122

Query: 146 -----GKRVVDTDYSVEDKFERLSIVDGGY------------------NRKR---GVTAF 179
                 +R +     V+    R  +   G+                   R+R   G +A 
Sbjct: 123 THVPRDRRTLLPISPVDRPTARAEVSVPGHGTAPDLSASVTPDSGPRATRRRLGTGPSAP 182

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
           L +  GCD+ C FC +P  RG  +SR ++++V+EAR L+D+GV E+ L+ +N +++ GK 
Sbjct: 183 LKMASGCDRRCAFCAIPRFRGSYLSRPIAEIVEEARWLVDHGVKEVFLVSENSSSY-GKD 241

Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
           L G+      LL +L ++ GL  +R +   P ++   LI      D ++PY  L  Q  S
Sbjct: 242 L-GDLRLLEKLLVNLDQVDGLEWIRVSYLQPAELRPGLIDTILATDKVVPYFDLSFQHAS 300

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
             +L+ M R   A  +  IID IRS  P+  + S+FI GFPGETD D     D + +   
Sbjct: 301 GPLLRRMRRFGDAESFLNIIDSIRSRCPEAGLRSNFITGFPGETDADVAVLADFLQRARL 360

Query: 360 AQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419
             A  F YS   GT  + +   VDE+V   R        RE      D  V Q  E  I 
Sbjct: 361 DVAGVFAYSDEEGTEAAGLDGHVDEDVVTAR--------REDLADLTDELVSQRAEDRIG 412

Query: 420 KHGKE-----KGKLVGRS----PWLQSVV--LNSKNHNIGDIIKV 453
             G+         ++GR+    P +   V  +++   ++GDI+ V
Sbjct: 413 TRGRVMVEEIDEAVIGRAEHQGPEVDGCVTLVDAAAVSVGDIVDV 457


>gi|297626501|ref|YP_003688264.1| 2-methylthioadenine synthetase MiaB protein [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
 gi|296922266|emb|CBL56838.1| 2-methylthioadenine synthetase MiaB protein [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
          Length = 477

 Score =  155 bits (393), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 134/483 (27%), Positives = 210/483 (43%), Gaps = 53/483 (10%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++  + S GC  N  DS  +     + G+  V+  D AD +++NTC   E+A +     +
Sbjct: 4   KKVHLISLGCARNDVDSEELAGRLEAGGFSLVDEPDSADALIVNTCGFVEQAKKDSIDTI 63

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
               +LK+S    GG   VV  GC+AQ  G E+    P  + V+G   Y  + E L    
Sbjct: 64  LAAADLKDS----GGPRTVVAVGCLAQRYGAELADSLPEADAVLGFDDYTDIAERLRTVM 119

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT--------------------------- 177
            G  V     +V D+   L I     +R+R V                            
Sbjct: 120 AGGTV--QPPTVMDRRTLLPIAPIERHRRRAVPGHQGELPTGIAPASGPRVPRRRLDNAP 177

Query: 178 -AFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR 236
            A L I  GCD+ C FC +P  RG  +SR   ++V+EA  L+  GV EI L+ +N +++ 
Sbjct: 178 WAPLKIASGCDRRCAFCAIPSFRGAYLSRDADEIVEEAGWLVGQGVREIMLVSENSSSY- 236

Query: 237 GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQ 296
           GK L  +      LL  LS + GL  +R +   P ++   L+        ++PY  L  Q
Sbjct: 237 GKDL-ADLRALESLLKRLSALDGLDWIRVSYLQPAELRSSLVDVMTSTPKVLPYFDLSFQ 295

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
             S  +L+ M R      +  +ID IR   P   I S+ IVGFPGET +D     D + +
Sbjct: 296 HASAPLLRRMRRFGDPESFLGLIDSIRQRAPQAGIRSNVIVGFPGETSNDVDVLADFLAR 355

Query: 357 IGYAQAFSFKYSPRLGTPGSNMLEQV-DENVKA--ERLLCLQKKLREQQVSFNDACVGQI 413
                   F YS   GT  + + + V  E ++A  ER+  L   L +++ +     VGQ 
Sbjct: 356 ARLDAVGVFSYSDEDGTAAAELPDHVAAEEIEARHERIADLANVLCDERAAQR---VGQR 412

Query: 414 IEVLIEKHGKEKGKLVGRSP-------WLQSVVLNSKNH--NIGDIIKVRITDVKISTLY 464
           ++VL+E  G E  ++ GR+           +V++    H    GD++   + D     L 
Sbjct: 413 VQVLVE--GVEGSQVTGRAAHQGPDVDGTTTVLVGQGRHMPTPGDMVSASVIDTVGVDLT 470

Query: 465 GEL 467
            E+
Sbjct: 471 AEI 473


>gi|282881454|ref|ZP_06290128.1| MiaB-like protein [Prevotella timonensis CRIS 5C-B1]
 gi|281304680|gb|EFA96766.1| MiaB-like protein [Prevotella timonensis CRIS 5C-B1]
          Length = 436

 Score =  155 bits (393), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 123/449 (27%), Positives = 219/449 (48%), Gaps = 37/449 (8%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEK-VYSFLGRI 87
           + GC  N+ DS ++  +F   GY   +  +  D ++ V+NTC   E A E+ + + L  +
Sbjct: 13  TMGCSKNLVDSEKLMRLFEDNGYRCTHDSESPDGEIAVINTCGFIESAKEESINTILSFV 72

Query: 88  RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147
              K  R+K+     + V GC+++   +E+    P V+   G   Y +L      +  GK
Sbjct: 73  EAKKEGRLKK-----LFVMGCLSERYKDELENEIPEVDKFYGKFNYKQL-----LSDLGK 122

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
             + + + +     R       Y       A+L I EGCD+ C +C +P   G   SR  
Sbjct: 123 SEISSCHGL-----RHLTTPRHY-------AYLKISEGCDRQCAYCAIPLMTGKHKSRLK 170

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
             ++ E + ++  GV E  ++ Q +  + G+ +DG K   +DL+ +++EI+G+  +R   
Sbjct: 171 LDILTEVKDMVAQGVKEFQVIAQELTYY-GRDIDG-KQHIADLISAIAEIEGVQWIRLHY 228

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
           ++P      L+    +   +  YL + +Q  SD +L  M+R  T  E   +I  IR+  P
Sbjct: 229 AYPNQFPLELLDVIRENKKVCNYLDIALQHISDGVLSRMHRHVTKLETLNLIKTIRAKAP 288

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQVDENV 386
            I + +  +VGFPGET+++F+  +D V    + +  +F YS   GT G+ +  + V   V
Sbjct: 289 GIHLRTTLMVGFPGETEEEFQELLDFVRWARFERMGAFMYSEEEGTYGALHYQDDVSLAV 348

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQ-----SVVLN 441
           K +RL  L    +E         +G+ ++V+I++  KE    +GR+ +        V+++
Sbjct: 349 KQQRLDQLMAVQQEISAEIEAEKIGKTMKVIIDR--KENDYYIGRTEYCSPDVDPEVLIH 406

Query: 442 S--KNHNIGDIIKVRITDVKISTLYGELV 468
           S  KN  IG   +V+ITD +   LYGE+V
Sbjct: 407 SAGKNLEIGAFYQVKITDAEEFDLYGEVV 435


>gi|18409989|ref|NP_565035.1| radical SAM domain-containing protein / TRAM domain-containing
           protein [Arabidopsis thaliana]
 gi|12322201|gb|AAG51137.1|AC069273_8 unknown protein [Arabidopsis thaliana]
 gi|14194137|gb|AAK56263.1|AF367274_1 At1g72090/F28P5_4 [Arabidopsis thaliana]
 gi|27363418|gb|AAO11628.1| At1g72090/F28P5_4 [Arabidopsis thaliana]
 gi|332197151|gb|AEE35272.1| Methylthiotransferase [Arabidopsis thaliana]
          Length = 601

 Score =  155 bits (393), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 126/452 (27%), Positives = 211/452 (46%), Gaps = 36/452 (7%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           Q  ++K++GC  N  DS  M     + GY      ++ADL ++NTC ++  +   + + +
Sbjct: 64  QTIYIKTFGCSHNQSDSEYMAGQLSAFGYALTEVPEEADLWLINTCTVKSPSQSAMSTLI 123

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R R+         G   +V+AGCV Q  G   L+    V+VV G Q   R+ E++E   
Sbjct: 124 TRGRS---------GKKPLVIAGCVPQ--GSRDLKELEGVSVV-GVQQIDRVVEIVEETL 171

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G  V           + L  +D    R+      L I  GC   CT+C   + RG   S
Sbjct: 172 KGHEVRLLTR------KTLPALDLPKVRRNNFIEILPINVGCLGACTYCKTKHARGHLGS 225

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAW-RGKGLDGEKCTFSDLLYSLSEIKGL--- 260
            ++  +V+  R +I  GV EI L  ++  A+ R  G++        LL ++  +K L   
Sbjct: 226 YTVDSLVERVRTVISEGVKEIWLSSEDTGAYGRDIGVN-----LPILLNAI--VKELPSD 278

Query: 261 --VRLRYTTSHPRDMSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
               LR   ++P  + + L +    L    +  +LH+PVQSGSD +L +MNR +TA E+R
Sbjct: 279 QSTMLRIGMTNPPFILEHLKEIAAVLRHPCVYTFLHVPVQSGSDSVLTAMNREYTASEFR 338

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
            ++D +  + P + I++D I GFPGETD+DF  T++L+    + Q    ++ PR GTP +
Sbjct: 339 TVVDTLTELVPGMQIATDIICGFPGETDEDFSQTVELIKDYKFPQVHISQFYPRPGTPAA 398

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQ 436
            M ++V   +  +R   L              C  +   + I +   +   LVG +    
Sbjct: 399 KM-KKVQSKIVKQRSRELTSVFEAFAPYTGMECREE--RIWITEVATDGIHLVGHTKGYV 455

Query: 437 SVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            V++      +G     RIT V   +++GE++
Sbjct: 456 QVLVTGPESMLGTSAMARITSVGRWSVFGEVI 487


>gi|21224098|ref|NP_629877.1| hypothetical protein SCO5752 [Streptomyces coelicolor A3(2)]
 gi|289768712|ref|ZP_06528090.1| MiaB-like tRNA modifying enzyme YliG [Streptomyces lividans TK24]
 gi|81345581|sp|O86812|RIMO_STRCO RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|3294240|emb|CAA19853.1| conserved hypothetical protein SC7C7.07 [Streptomyces coelicolor
           A3(2)]
 gi|289698911|gb|EFD66340.1| MiaB-like tRNA modifying enzyme YliG [Streptomyces lividans TK24]
          Length = 493

 Score =  155 bits (393), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 121/421 (28%), Positives = 189/421 (44%), Gaps = 37/421 (8%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC  N  DS  +     + G++ V+  ++AD+ V+NTC   E A +     L    +L
Sbjct: 11  TLGCARNEVDSEELAGRLEADGWKLVDDAEEADVAVVNTCGFVEAAKKDSVDALLEANDL 70

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL---------- 140
           K      G    VV  GC+A+  G+E+    P  + V+G   Y  + + L          
Sbjct: 71  KG----HGRTQAVVAVGCMAERYGKELADALPEADGVLGFDDYADISDRLQTILNGGIHA 126

Query: 141 ----------------ERARFGKRVVDTDYSVEDKFERLSIVDGGYN--RKR---GVTAF 179
                           ER   G  V    +   D  E ++   G     R+R      A 
Sbjct: 127 AHTPRDRRKLLPISPAERQEAGAAVALPGHGPTDLPEGVAPASGPRAPLRRRLDGSPVAS 186

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
           + +  GCD+ C+FC +P  RG  ISR  S V++E R L + GV EI L+ +N N   GK 
Sbjct: 187 VKLASGCDRRCSFCAIPSFRGSFISRRPSDVLNETRWLAEQGVKEIMLVSEN-NTSYGKD 245

Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
           L G+      LL +L+E+ G+ R+R +   P +M   LI      + + PY  L  Q  +
Sbjct: 246 L-GDIRLLESLLPNLAEVDGIERVRVSYLQPAEMRPGLIDVLTSTEKVAPYFDLSFQHSA 304

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
             +L++M R      + +++D IRS  P+  + S+FIVGFPGE++ D       ++    
Sbjct: 305 PNVLRAMRRFGDTDRFLELLDTIRSKAPEAGVRSNFIVGFPGESEADLAELERFLNHARL 364

Query: 360 AQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419
                F YS   GT  +   +++DE+V AERL  + +   E      D  VG  + VL+E
Sbjct: 365 DAIGVFGYSDEEGTEAATYGDKLDEDVVAERLARVSRLAEELVSQRADERVGATVRVLVE 424

Query: 420 K 420
            
Sbjct: 425 S 425


>gi|134102329|ref|YP_001107990.1| hypothetical protein SACE_5882 [Saccharopolyspora erythraea NRRL
           2338]
 gi|238066583|sp|A4FLZ0|RIMO_SACEN RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|133914952|emb|CAM05065.1| hypothetical protein SACE_5882 [Saccharopolyspora erythraea NRRL
           2338]
          Length = 484

 Score =  155 bits (393), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 120/463 (25%), Positives = 208/463 (44%), Gaps = 47/463 (10%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +R  + + GC  N  DS  +      +G++ ++    AD++V+NTC   E A +     L
Sbjct: 8   RRVAMVTLGCARNEVDSEELAGNLHQRGWDLIDDESSADVVVVNTCGFVESAKKDSVDTL 67

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
               +             VV  GC+A+  G E+    P  + V+G   Y  L E L+   
Sbjct: 68  LAASDTGAK---------VVAVGCMAERYGAELAEHLPEADAVLGFDHYGNLAERLDDVL 118

Query: 145 FGKRVVDTDYSVEDKFERLSIVD-----------------GGYNRKRGVT---------A 178
            G+ +    +  +D+ + L I                   G     RG+          A
Sbjct: 119 AGRAI--QPHQPQDRRKMLPITPVARPAAAAASEVAVPGHGWVPSTRGIARRRLDDSPLA 176

Query: 179 FLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK 238
            L +  GCD+ C+FC +P  RG  +SR   +V+ EA  L + G  E+ L+ +N  ++ GK
Sbjct: 177 ALKLASGCDRRCSFCAIPSFRGSFLSRQPEEVLGEAAWLAEQGAKELFLVSENSTSY-GK 235

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
            L   +     LL  L+ I G+ R+R +   P +    L++A      + PY  L  Q  
Sbjct: 236 DLSDPRA-LETLLPRLAGIDGVDRVRVSYLQPAETRPGLVRAIATTPGVAPYFDLSFQHS 294

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           S+++L+ M R  +   +  +I++IR + P+  I S+ IVGFPGET++DF    D + +  
Sbjct: 295 SEKVLRRMRRFGSTESFLALIEQIRELAPEAGIRSNVIVGFPGETEEDFEELQDFLTRAR 354

Query: 359 YAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI 418
                 F YS   GT  +    ++D +V A R+  +     E      +  VG  + VL+
Sbjct: 355 LDAVGVFGYSDEDGTEAAGFDGKLDADVVAARVEQVSALADELVAQRAEDRVGTEVRVLV 414

Query: 419 EKHGKEKGKLVGRS----PWL--QSVVLNSKNHNIGDIIKVRI 455
           E+   E G++ GR+    P +  + VV+++    +G+++  R+
Sbjct: 415 ER--DEDGEVTGRAEHQGPEVDGECVVVDAGGAGVGEVVHCRV 455


>gi|89898549|ref|YP_515659.1| hypothetical protein CF0742 [Chlamydophila felis Fe/C-56]
 gi|89331921|dbj|BAE81514.1| conserved hypothetical protein [Chlamydophila felis Fe/C-56]
          Length = 421

 Score =  155 bits (392), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 124/448 (27%), Positives = 213/448 (47%), Gaps = 54/448 (12%)

Query: 33  GCQMNVYDSLRMEDMFFSQGY-ERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLK 91
           GC++N Y+     D     GY E ++     DL ++NTC +   A           R+  
Sbjct: 16  GCRVNQYEIQSYRDQLNFLGYREIIDPEVPCDLCIVNTCAVTGSAESSG-------RHAV 68

Query: 92  NSRIKEGGDLLVVVAGCVAQAEGE---EILRRSPIVNVVVGPQTYYRL-PELLERARFGK 147
               ++  D  +VV GC+ +++ E    + R+  +V+     Q   ++ P + +   F  
Sbjct: 69  RQVCRQNPDAFLVVTGCLGESDKEFFNSLGRQCLLVSNKEKHQLMEKIFPAIQDLPEFRI 128

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
           R           FE       G +R     AF+ +Q+GC+ FC++C++PY RG   SR  
Sbjct: 129 R----------SFE-------GKSR-----AFIKVQDGCNSFCSYCIIPYLRGRSRSRPA 166

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
            +V++E   ++  G  E+ + G NV  ++ +G      + + L+  + EI+G+ R+R ++
Sbjct: 167 REVLEEISGIVSQGYREVVIAGINVGDYQDEGH-----SLAHLIRRVDEIEGIERIRISS 221

Query: 268 SHPRDMSDCLIKAHGDLDVLMP------YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
             P D+ + L       DVL+         HL +QSGS+ ILK MNR+++  ++   +D 
Sbjct: 222 IDPEDVQEDL------RDVLLSGKHTCHSSHLVLQSGSNAILKRMNRKYSRGDFLDCVDA 275

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +RS  P  A ++D IVGFPGETD DF  T+ +++ +G+ +   F +SPR  T       Q
Sbjct: 276 LRSGDPKYAFTTDVIVGFPGETDSDFEDTLRVIEDVGFIKVHIFPFSPRERTKAYTFSSQ 335

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL- 440
           +  +V  ER   L    RE         +G+ + VL+E+   ++G   G SP+   V   
Sbjct: 336 LPPSVINERKKHLAHVAREVARREMTRRIGETLSVLVER--IDEGVAYGHSPYFDMVGFP 393

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
            + N  +  +  V I  V+   L G+ V
Sbjct: 394 ATANVAVNTLQDVCIESVEDDVLKGKRV 421


>gi|315080671|gb|EFT52647.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes
           HL078PA1]
          Length = 474

 Score =  155 bits (392), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 133/465 (28%), Positives = 208/465 (44%), Gaps = 56/465 (12%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N  DS  +     + G+  V+   +A+ +V+NTC   E+A +     L    +L
Sbjct: 7   SMGCARNDVDSEELAARMEAGGFRLVDDPAEAETVVVNTCGFIEQAKKDSVDTLLAAADL 66

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYY----RLPELLERARF- 145
           K + I       VV  GC+A+  G E+    P  + V+G   Y     RL  +L+     
Sbjct: 67  KGNGITTS----VVAVGCMAERYGRELAESLPEADAVLGFDDYGDIAGRLRTILDGGSLE 122

Query: 146 -----GKRVVDTDYSVEDKFERLSIVDGGY------------------NRKR---GVTAF 179
                 +R +     V+    R  +   G+                   R+R   G +A 
Sbjct: 123 THVPRDRRTLLPISPVDRPTARAEVSVPGHGTAPDLSASVTPDSGPRATRRRLGTGPSAP 182

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
           L +  GCD+ C FC +P  RG  +SR ++++V+EAR L+D+GV E+ L+ +N +++ GK 
Sbjct: 183 LKMASGCDRRCAFCAIPRFRGSYLSRPIAEIVEEARWLVDHGVKEVFLVSENSSSY-GKD 241

Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
           L G+      LL +L ++ GL  +R +   P ++   LI      D ++PY  L  Q  S
Sbjct: 242 L-GDLRLLEKLLVNLDQVDGLEWIRVSYLQPAELRPGLIDTILATDKVVPYFDLSFQHAS 300

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
             +L+ M R   A  +  IID IRS  P+  + S+FI GFPGETD D     D + +   
Sbjct: 301 GPLLRRMRRFGDAESFLNIIDSIRSRCPEAGLRSNFITGFPGETDADVAVLADFLQRARL 360

Query: 360 AQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419
             A  F YS   GT  + +   VDE+V   R        RE      D  V Q  E  I 
Sbjct: 361 DVAGVFAYSDEEGTEAAGLDGHVDEDVVTAR--------REDLADLTDELVSQRAEDRIG 412

Query: 420 KHGKE-----KGKLVGRS----PWLQSVV--LNSKNHNIGDIIKV 453
             G+         ++GR+    P +   V  +++   ++GDI+ V
Sbjct: 413 TPGRVMVEEIDEAVIGRAEHQGPEVDGCVTLVDAAAVSVGDIVDV 457


>gi|296114905|ref|ZP_06833553.1| MiaB-like tRNA modifying enzyme [Gluconacetobacter hansenii ATCC
           23769]
 gi|295978611|gb|EFG85341.1| MiaB-like tRNA modifying enzyme [Gluconacetobacter hansenii ATCC
           23769]
          Length = 416

 Score =  155 bits (392), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 106/351 (30%), Positives = 167/351 (47%), Gaps = 26/351 (7%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRI- 87
           + ++GC++N Y+S  M          R ++    +++++NTC +  +A  +    + R  
Sbjct: 6   ILTFGCRLNTYESEVM----------RTHAAGLDNVVIVNTCAVTAEAERQARQAVRRAH 55

Query: 88  RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147
           R+  ++RI        VV GC AQ + +      P V  V+G +         E A    
Sbjct: 56  RDRPDARI--------VVTGCAAQIDPDR-WAALPGVTRVLGNREKLAAESWSEAALSQG 106

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
             V    +  +    L     G  R     AF+ +Q+GCD  CTFC++P+ RG   S  +
Sbjct: 107 NAVSDIMAARESAPHLVTEFAGRTR-----AFVEVQQGCDHRCTFCIIPFGRGPSRSVPV 161

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
             VV++ R L+ +G  E+ + G ++ +W G  L G+          L+ +  L RLR ++
Sbjct: 162 GVVVEQVRALVASGYREVVMTGVDITSW-GGDLPGQPSLGQLCRRLLALVPELERLRLSS 220

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
             P ++ D L +        MPYLHL +Q+GSD ILK M RRH  ++   +I R R +RP
Sbjct: 221 VDPVEIDDGLWQLLEHEPRFMPYLHLSLQAGSDMILKRMKRRHLTHDVAAVIARARGLRP 280

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           DI I +D I GFP E +  F  T+D +          F YS R GTP + M
Sbjct: 281 DIGIGADVIAGFPTEDEALFNETLDFIAGQALPYLHVFPYSERPGTPAARM 331


>gi|168060037|ref|XP_001782005.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162666496|gb|EDQ53148.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 489

 Score =  155 bits (392), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 130/448 (29%), Positives = 210/448 (46%), Gaps = 28/448 (6%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           Q  ++K++GC  N  DS  M       GY   ++ D ADL ++NTC ++  +   + + +
Sbjct: 65  QTVYLKTFGCSHNQSDSEYMAGQLSDYGYSVTDAPDGADLWLINTCTVKNPSQSAMENLI 124

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
                    + K+ G  LVV AGCV Q  G++ L+    V+VV G Q   R+ E++E   
Sbjct: 125 --------RKGKDAGKPLVV-AGCVPQ--GDKNLKDLEGVSVV-GVQQIDRVVEVVEETL 172

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G  V     S       L  +D    RK      + I  GC   CT+C   + RG   S
Sbjct: 173 KGHEVRLLRRS------SLPSLDLPKVRKNKFVEIVPINVGCLGACTYCKTKHARGHLGS 226

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
             L+ +VD  + ++  GV EI L  ++  A+ G  L  +  T  + L  +        LR
Sbjct: 227 YPLASLVDRVKGVVAEGVKEIWLSSEDTGAY-GIDLGTDLPTLLNALVDVLPKDRSCMLR 285

Query: 265 YTTSHPRDMSDCL--IKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
              ++P  +   L  I A  +   +  +LH+PVQSGSD +L +MNR +T  +++++ D +
Sbjct: 286 IGMTNPPYILKHLESIAAILNHPCVYSFLHVPVQSGSDNVLCAMNREYTVSDFKKVADTL 345

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
             + PD+ +++D I GFPGET +DF ATM LV +  ++Q    ++ PR GTP + M    
Sbjct: 346 LRLVPDLHLATDIICGFPGETSEDFEATMALVKEYKFSQLHISQFYPRPGTPAARMKRVP 405

Query: 383 DENVKAERLLCLQKKLREQQVSFN--DACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440
              VK        ++L     SFN      G+   V +     +   LVG +     V+L
Sbjct: 406 TAEVKKR-----SRELTTLFESFNPYSGMEGKEQRVWVTDVASDGVHLVGHNKSYVQVLL 460

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 +G  + V+I  V   ++ GE++
Sbjct: 461 PEAEGLMGSSVDVKIISVNRWSVMGEVL 488


>gi|300691379|ref|YP_003752374.1| 2-methylthioadenine synthetase [Ralstonia solanacearum PSI07]
 gi|299078439|emb|CBJ51091.1| putative 2-methylthioadenine synthetase [Ralstonia solanacearum
           PSI07]
          Length = 459

 Score =  155 bits (392), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 134/477 (28%), Positives = 223/477 (46%), Gaps = 65/477 (13%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  FV S GC   + DS ++     ++GYE   +   ADL+V+NTC   ++A ++    
Sbjct: 15  PRVGFV-SLGCPKALVDSEQIITQLRAEGYEISGTYGGADLVVVNTCGFIDEAVQESLDA 73

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAE---GEEILRR-SPIVNVVVGPQTYYRLPEL 139
           +G         + E G   V+V GC+   +   G +I+    P V  V GP   + L E+
Sbjct: 74  IGEA-------LAENGK--VIVTGCLGAKKDTAGNDIITSVHPKVLAVTGP---HALGEV 121

Query: 140 LERARFGKRVVDTDYS-VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
           +E        V T      D F  L +   G        A+L I EGC+  C+FC++P  
Sbjct: 122 ME-------AVHTHLPKPHDPFIDL-VPPQGIKLTPKHYAYLKISEGCNHRCSFCIIPSM 173

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTF 247
           RG  +SR +++V+ EA  L+  GV E+ ++ Q+ +A           W G+ L   K   
Sbjct: 174 RGDLVSRPVAEVMLEAENLLKAGVKELLVISQDTSAYGVDVKFRTGFWNGRPL---KTRM 230

Query: 248 SDLLYSLSEIKG----LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
           ++L+ +L E+       VRL Y   +P       + A G +   +PYL +P+Q     +L
Sbjct: 231 TELVGALGELAAQYGAWVRLHYVYPYPSVDEVMPLMAEGKV---LPYLDVPLQHAHPEVL 287

Query: 304 KSMNRRHTAYEYRQIIDRIRSVR---PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
           K M R   A    + +DRIR+ R   P++ I S FI GFPGET+++F+  +D + +    
Sbjct: 288 KRMKRPANA---EKTLDRIRAWREVCPELTIRSTFIAGFPGETEEEFQTLLDFISEAELD 344

Query: 361 QAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
           +   F YSP  G   +++   + + V+ ER     +             VG+ + VL+++
Sbjct: 345 RVGCFAYSPVEGATANDLPGALPDAVREERRARFMEVAERVSARRLQRKVGKTLRVLVDE 404

Query: 421 HGKEKGKLVGRS----PWLQSVVLNS------KNHNIGDIIKVRITDVKISTLYGEL 467
             ++ G  +GRS    P +  +V  +      K +  GD + V+IT      L+GE+
Sbjct: 405 VNQDGG--IGRSSADAPEIDGLVYIAPPSKPYKRYKAGDFVSVKITGADGHDLWGEV 459


>gi|120601285|ref|YP_965685.1| MiaB-like tRNA modifying enzyme YliG [Desulfovibrio vulgaris DP4]
 gi|238065336|sp|A1V9Z2|RIMO_DESVV RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|120561514|gb|ABM27258.1| SSU ribosomal protein S12P methylthiotransferase [Desulfovibrio
           vulgaris DP4]
          Length = 430

 Score =  155 bits (392), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 129/448 (28%), Positives = 205/448 (45%), Gaps = 49/448 (10%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGY--ERVNSMDDADLIVLNTC-HIREKAAEKVYSFLGRI 87
           S GC  N  D+   E +  S G   + V  +  AD++++NTC  I     E V + +  I
Sbjct: 8   SLGCPKNRVDT---EHLLGSLGVAVQPVEHLSRADVVLINTCGFILPAVEESVRTIVETI 64

Query: 88  RNLKNSRIKEGGDLLVVVAGC-VAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
            +L   R +     L+ VAGC V +   +E+    P V+V +  Q     P +L  A   
Sbjct: 65  DDLSGLRKRP----LLAVAGCLVGRYGAKELASELPEVDVWLPNQDITAWPAMLAHAL-- 118

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
                       K E  ++  G         A+L I +GC   C+FC +P  RG   S  
Sbjct: 119 ------------KLEG-AVTPGRLLSTGPSYAWLKISDGCRHNCSFCTIPSIRGGHRSTP 165

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRY 265
              +  EAR L+  GV E+ L+ Q+V AW   G D G     + LL  L  + GL RLR 
Sbjct: 166 ADVLEREARDLVAQGVRELVLVAQDVTAW---GEDIGAPHGLATLLERLLPVPGLARLRL 222

Query: 266 TTSHPRDMSDCLIKAHGDLDV-LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
              +P  ++  L+    D    L+PY  +P+Q     IL  M R   A + R++++R+R 
Sbjct: 223 MYLYPAGLTRELLGFMRDAGAPLVPYFDVPLQHAHPDILSRMGRPF-ARDPRRVVERVRD 281

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             PD A+ +  IVGFPGETD+ + A    V++  +     F Y    GTP + M EQV++
Sbjct: 282 FFPDAALRTSLIVGFPGETDEHYAALTSFVEETRFTHMGVFAYRAEEGTPAAEMPEQVED 341

Query: 385 NVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
            VK  R   L+ +Q ++ E+ ++ ++    Q++  +   H +  G   GR+ W Q+  ++
Sbjct: 342 RVKEWRRDALMEVQAEISEELLAVHEGTRQQVL--VDAPHEEWPGLHTGRT-WFQAPEID 398

Query: 442 SKNHNIG-----------DIIKVRITDV 458
              +  G           DI++ R  D+
Sbjct: 399 GITYVSGPGVEPGALVEADIVETRTYDL 426


>gi|302829076|ref|XP_002946105.1| hypothetical protein VOLCADRAFT_127348 [Volvox carteri f.
           nagariensis]
 gi|300268920|gb|EFJ53100.1| hypothetical protein VOLCADRAFT_127348 [Volvox carteri f.
           nagariensis]
          Length = 529

 Score =  155 bits (392), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 120/446 (26%), Positives = 207/446 (46%), Gaps = 53/446 (11%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  NV D   +       G+   +  + +D I++NTC   E A  +    +    +L
Sbjct: 49  SLGCPKNVVDGEVLLGDLTRAGFSVTDDHEQSDAIIVNTCAFVEDAKSESLEAIVEAASL 108

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA------- 143
                ++G    VV+ GC+AQ   +++    P  ++VVG Q Y  L   L+R+       
Sbjct: 109 N----EDGKRRKVVITGCLAQRYSDQLASDLPEADLVVGFQKYGNLAASLQRSMGLEPTR 164

Query: 144 ---------RFGKRVVDTDYSVEDKFERLSIVDGGYNRKR---GVT-------------- 177
                       ++  +   +  D   R  + + G + +R   G +              
Sbjct: 165 EALELATAAEAQQQSQEEGVTSADAGARGEVAEAGTSGQRVQVGASTVPFRPEWDRYRLT 224

Query: 178 ----AFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVN 233
               A+L + EGC+  CTFC +P  RG   S+    V+DEAR L+ NGV E+ L+ ++ N
Sbjct: 225 PRHSAYLRVAEGCNHACTFCAIPGFRGKFRSKPWQAVLDEARHLVANGVKELNLIAEDTN 284

Query: 234 AWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIK--AHGDLDVLMPYL 291
            +     DG     + LL  LS+++GL  +R   ++P   +D LI   A      +  YL
Sbjct: 285 QYGMDRRDGRD--LAQLLRELSQLEGLHWIRILYAYPSYFNDALIDEIATNPKARVCKYL 342

Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351
            +P+Q  S+  L +MNR    +  + +      + P +A+ + FI GFPGETD   R  +
Sbjct: 343 DMPLQHISNLTLLAMNRPPREHTLKLLTTLRTRI-PSLALRTTFISGFPGETDQQHRELV 401

Query: 352 DLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER---LLCLQKKLREQQVSFNDA 408
           + V    + +   F +S   GTP +++ +QV + V+  R   L+ LQ+++ E+   + + 
Sbjct: 402 EFVKTFKFERMGCFAFSEEDGTPAASLPDQVPQRVRERRRDELISLQQRIGEE---WAEG 458

Query: 409 CVGQIIEVLIEKHGKEKGKLVGRSPW 434
            VG+ +EVL+E +  +   L+GR+ W
Sbjct: 459 LVGREVEVLVEGYNDDDW-LIGRTQW 483


>gi|285017767|ref|YP_003375478.1| hypothetical protein XALc_0973 [Xanthomonas albilineans GPE PC73]
 gi|283472985|emb|CBA15490.1| hypothetical protein XALc_0973 [Xanthomonas albilineans]
          Length = 413

 Score =  155 bits (392), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 117/383 (30%), Positives = 180/383 (46%), Gaps = 30/383 (7%)

Query: 103 VVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFER 162
           V+V GC+ +   E+I    P V  V GPQ Y  + E +  A   +   D    +  +   
Sbjct: 25  VIVTGCLGK-RSEQIRAAYPDVLAVSGPQDYQSVMEAVHAALPPRH--DPFVDLLPRGRG 81

Query: 163 LSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGV 222
            S  D G        A+L I EGC+  C+FC++P  RG  +SR + +V+ EA +L+  GV
Sbjct: 82  SSEDDIGVKLTPRHYAYLKISEGCNHRCSFCIIPSMRGDLVSRPVDEVLREAERLVKGGV 141

Query: 223 CEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPR 271
            E+ ++ Q+ +A           WRG+     +   + L   L+E+    RL Y   +P 
Sbjct: 142 RELLIVSQDTSAYGVDLKYAEREWRGRAY---QTRMTALCEGLAELGAWTRLHYVYPYPH 198

Query: 272 DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAI 331
                 + A G L   +PYL +P Q  S RILK M R        + + R R++ PDI +
Sbjct: 199 VDDVIPLMAEGKL---LPYLDIPFQHASPRILKLMKRPGAVERTLERVQRWRALCPDITL 255

Query: 332 SSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERL 391
            S FIVGFPGETD +F   ++ +D     +  +F YSP  G   + + + V E +K ERL
Sbjct: 256 RSTFIVGFPGETDAEFEQLLEFLDAAQLDRVGAFAYSPVEGASANALPDPVPEALKQERL 315

Query: 392 LCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVV--LNSKNH 445
                +  E   +  DA +G + E L++    E    V RS    P +  +V   N    
Sbjct: 316 ARFMARQAEISAARLDAKIGSVQECLVDL--LEDSIAVARSKADAPEIDGLVHIQNGAES 373

Query: 446 NI--GDIIKVRITDVKISTLYGE 466
            +  GD+++V ITD     L+G+
Sbjct: 374 GLKPGDLVQVEITDSDEHDLFGD 396


>gi|154175462|ref|YP_001408235.1| hypothetical protein CCV52592_1067 [Campylobacter curvus 525.92]
 gi|112802784|gb|EAU00128.1| conserved hypothetical protein [Campylobacter curvus 525.92]
          Length = 416

 Score =  155 bits (392), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 112/396 (28%), Positives = 200/396 (50%), Gaps = 29/396 (7%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           Q+ F K++GC+ N+YD+  M+   + + YE  N  + AD++V+N+C +   A   V    
Sbjct: 3   QKIFFKTFGCRTNIYDTELMKS--YVKDYEITNDEEIADVVVINSCTVTNSADSGV---- 56

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
              RN  N   + G    V++ GC A ++G+E+  +  I  V+   Q       L  + R
Sbjct: 57  ---RNYINGVKRRGAK--VILTGCGAVSKGKELFDKDAIFGVMGASQKANINSLLSSKQR 111

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
           F +     D +  DK    +IV    N  +   AF+ IQEGC+  C++C++P  RG   S
Sbjct: 112 FFEL---GDLNSIDK----NIVTSYENHTK---AFIKIQEGCNFACSYCIIPSVRGKARS 161

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
              + +++EA+ L  NG  E+ L G N+ ++ GK       +   LL +L +I G+ R+R
Sbjct: 162 MDENSIINEAKILAANGYNELVLTGTNIGSY-GKDTG---SSLGRLLANLGKIPGIRRIR 217

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
             +  P  + +   +   +   L  +LH+ +Q  S+++L+ M RR+ A+   ++ + + S
Sbjct: 218 LGSIEPSQIDESFREILKE-SWLERHLHIALQHTSEKMLRIMRRRNQAFSDLELFNELSS 276

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           +    A+ +DFIVG PGE+++ +   ++   K       +F YSPR  T  + M   V  
Sbjct: 277 L--GFALGTDFIVGHPGESEEIWAEALENFKKFPLTHLHAFAYSPRANTHSATMKAGVGG 334

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
           +V  ERL  L++   +  ++F      + ++VL+EK
Sbjct: 335 DVAKERLNLLKQITAQNNLNFRKRH-KENLKVLVEK 369


>gi|110678963|ref|YP_681970.1| RNA modification protein [Roseobacter denitrificans OCh 114]
 gi|123172670|sp|Q169Q9|RIMO_ROSDO RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|109455079|gb|ABG31284.1| RNA modification enzyme, MiaB-family, putative [Roseobacter
           denitrificans OCh 114]
          Length = 459

 Score =  155 bits (392), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 127/454 (27%), Positives = 208/454 (45%), Gaps = 46/454 (10%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC   + DS R+     ++GY      D AD +++NTC   + A  +  S +G   N 
Sbjct: 33  SLGCPKALVDSERILTRLRAEGYGISPDYDGADAVIVNTCGFLDSAKAESLSAIGEALN- 91

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
           +N R        V+V GC+  AE E I    P V  V GPQ Y             ++V+
Sbjct: 92  ENGR--------VIVTGCLG-AEPEYITGAHPKVLAVTGPQQY-------------EQVL 129

Query: 151 DTDYSV----EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           D  ++      D F  L          R  + +L I EGC+  C FC++P  RG   SR 
Sbjct: 130 DAVHAAVPPSPDPFVDLLPATAVSLTPRHFS-YLKISEGCNHKCKFCIIPDMRGRLASRP 188

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-------GEKCTFSDLLYSLSEIKG 259
              V+ EA KL+DNGV E+ ++ Q+ +A+   G+D       G +   +DL   L  +  
Sbjct: 189 AHAVMREAEKLVDNGVRELLVISQDTSAF---GVDIKHAEERGHRAHITDLARDLGSLGA 245

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
            VRL Y   +P       + A G   +++PYL +P Q     +L+ M R   A +    I
Sbjct: 246 WVRLHYVYPYPHVRQLIPLMADG---LVLPYLDIPFQHAHPDVLRRMARPAAAAKTLDEI 302

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
              R++ PD+ + S FIVG+PGET+++F+  +D +D+    +   F+Y    G   + + 
Sbjct: 303 AAWRAICPDLTLRSTFIVGYPGETEEEFQTLLDWLDEAQLDRVGCFQYENVAGARSNALP 362

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG--KLVGRSPWLQS 437
           + V E+VK +R      K ++   +   A V Q +EV++++   +    +    +P +  
Sbjct: 363 DHVPEDVKQDRWNRFMAKSQDISEAKLAAKVAQRLEVIVDEVDADAATCRTKADAPEIDG 422

Query: 438 VVLNSKNHN---IGDIIKVRITDVKISTLYGELV 468
            +     H+    GDI+ V + +     L+G L 
Sbjct: 423 NLFIDDGHDGLKPGDIVTVEVDEAGEYDLWGRLA 456


>gi|46581553|ref|YP_012361.1| putative tRNA modifying protein [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|81404006|sp|Q726F7|RIMO_DESVH RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|46450975|gb|AAS97621.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|311235197|gb|ADP88051.1| MiaB-like tRNA modifying enzyme YliG [Desulfovibrio vulgaris RCH1]
          Length = 430

 Score =  155 bits (392), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 129/448 (28%), Positives = 205/448 (45%), Gaps = 49/448 (10%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGY--ERVNSMDDADLIVLNTC-HIREKAAEKVYSFLGRI 87
           S GC  N  D+   E +  S G   + V  +  AD++++NTC  I     E V + +  I
Sbjct: 8   SLGCPKNRVDT---EHLLGSLGVAVQPVEHLSRADVVLINTCGFILPAVEESVRTIVETI 64

Query: 88  RNLKNSRIKEGGDLLVVVAGC-VAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
            +L   R +     L+ VAGC V +   +E+    P V+V +  Q     P +L  A   
Sbjct: 65  DDLSGLRKRP----LLAVAGCLVGRYGAKELASELPEVDVWLPNQDITAWPAMLAHAL-- 118

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
                       K E  ++  G         A+L I +GC   C+FC +P  RG   S  
Sbjct: 119 ------------KLEG-AVTPGRLLSTGPSYAWLKISDGCRHNCSFCTIPSIRGGHRSTP 165

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRY 265
              +  EAR L+  GV E+ L+ Q+V AW   G D G     + LL  L  + GL RLR 
Sbjct: 166 ADVLEREARDLVAQGVRELVLVAQDVTAW---GEDIGAPHGLATLLERLLPVPGLARLRL 222

Query: 266 TTSHPRDMSDCLIKAHGDLDV-LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
              +P  ++  L+    D    L+PY  +P+Q     IL  M R   A + R++++R+R 
Sbjct: 223 MYLYPAGLTRELLGFMRDAGAPLVPYFDVPLQHAHPDILSRMGRPF-ARDPRRVVERVRD 281

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             PD A+ +  IVGFPGETD+ + A    V++  +     F Y    GTP + M EQV++
Sbjct: 282 FFPDAALRTSLIVGFPGETDEHYAALTSFVEETRFTHMGVFAYRAEEGTPAAEMPEQVED 341

Query: 385 NVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
            VK  R   L+ +Q ++ E+ ++ ++    Q++  +   H +  G   GR+ W Q+  ++
Sbjct: 342 RVKEWRRDALMEVQAEISEELLAVHEGTRQQVL--VDAPHEEWPGLHTGRT-WFQAPEID 398

Query: 442 SKNHNIG-----------DIIKVRITDV 458
              +  G           DI++ R  D+
Sbjct: 399 GITYVSGPGVEPGALVEADIVETRTYDL 426


>gi|157129375|ref|XP_001661661.1| radical sam proteins [Aedes aegypti]
 gi|108872257|gb|EAT36482.1| radical sam proteins [Aedes aegypti]
          Length = 558

 Score =  155 bits (392), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 122/486 (25%), Positives = 218/486 (44%), Gaps = 67/486 (13%)

Query: 11  AHMVSQIVDQCIVP--QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLN 68
           A +  + V + ++P  Q  ++K++GC  N  DS  M     S GY   +   DADL +LN
Sbjct: 50  AAVPEKSVLESVIPGTQSIYLKTWGCAHNNSDSEYMAGQLASYGYNITSDKSDADLWLLN 109

Query: 69  TCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVV 128
           +C ++  + +         RN   +  K G    VV+AGCV QA  +           +V
Sbjct: 110 SCTVKNPSEDT-------FRNEIQAANKMGKH--VVLAGCVPQAAPKSDYMHG---LSIV 157

Query: 129 GPQTYYRLPELLE-------------RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRG 175
           G     R+ E++E             +   GKRV     ++               RK  
Sbjct: 158 GVHQIDRVTEVVEETLKGHSVRLLQAKKLNGKRVAGPQLALPKV------------RKNP 205

Query: 176 VTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW 235
           +   + I  GC   CT+C   + R   +S  + ++V  A  +   GVCEI L  ++   +
Sbjct: 206 LIEIIPINSGCLNACTYCKTKFARADLVSYPVEEIVQRAAHVFTEGVCEIWLTSEDTGTY 265

Query: 236 RGKGLDGEKCTFSDLLYSLSEI--------KGLVRLRYTTSHPRDMSDCLIKAHGDLDVL 287
            G+ +     +  +LL+ L  +         G+    Y   H  +M+  L+        +
Sbjct: 266 -GRDIG---TSLPELLWQLVAVIPDGCMLRLGMTNPPYILEHLEEMAKILVHPK-----V 316

Query: 288 MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDF 347
             +LH+P+QSGSD +L  M R +   ++ QI+D +    P I I++D I GFP ET++DF
Sbjct: 317 YSFLHVPIQSGSDSVLSDMKREYCRSDFEQIVDFLNDKVPGITIATDIICGFPTETEEDF 376

Query: 348 RATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFND 407
             TM L +K  +   F  ++ PR GTP + M     + + A+++    K+L +   ++ +
Sbjct: 377 EHTMTLCEKYKFPSLFINQFYPRPGTPAAKM-----QRIPADQVKVRTKRLTDLFYTY-E 430

Query: 408 ACVGQII-----EVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKIST 462
             VG+ +     +VL+ +   +K   VG +   + V+L    + +G +++V I  +   +
Sbjct: 431 PYVGKYVLGDRQKVLVTEISHDKKHYVGHNKCYEQVLLPMDKNLLGKLVEVEIVGITKFS 490

Query: 463 LYGELV 468
           +  ++V
Sbjct: 491 MLAKVV 496


>gi|90421738|ref|YP_530108.1| MiaB-like tRNA modifying enzyme [Rhodopseudomonas palustris BisB18]
 gi|90103752|gb|ABD85789.1| MiaB-like tRNA modifying enzyme [Rhodopseudomonas palustris BisB18]
          Length = 420

 Score =  155 bits (392), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 126/411 (30%), Positives = 190/411 (46%), Gaps = 51/411 (12%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V ++GC++N ++S  +     + G          D IV+N+C +  +A  +       IR
Sbjct: 5   VVTFGCRLNAFESELIRRQAEAAGC--------TDTIVVNSCAVTNEAVAQARQ---SIR 53

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
            LK  R        +VV GC AQ +   +      V+ V+G     R            R
Sbjct: 54  RLKRERPSA----RIVVTGCAAQTQAA-MFADMVEVDRVLGNDDKMR--------GTAWR 100

Query: 149 VVDTDYSVED--KFERLSIVD------------GGYNRKRGVT-AFLTIQEGCDKFCTFC 193
              T ++       E++++ D             GY  + G+   F+ +Q GCD  CTFC
Sbjct: 101 AAQTAFAAGPVPGAEKIAVADIMAVREMAPHLLDGY--QSGLPRVFVQVQNGCDHRCTFC 158

Query: 194 VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS 253
           ++P+ RG   S  L+  V++ R L + G  EI L G ++ ++ G  L G           
Sbjct: 159 IIPFGRGNSRSVPLAAAVEQVRALTERGHAEIVLTGVDLTSY-GADLAGAPTLGLLTKQI 217

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
           L E+  L RLR ++    +    L+    +   LMP+LHL +QSG D ILK M RRH   
Sbjct: 218 LREVPELQRLRISSIDSIEADADLLDVVANEPRLMPHLHLSLQSGDDLILKRMKRRHCRA 277

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
           +  +   ++R +RPDIA+ +D I GFP ETD+ F  ++DLV+    +    F YSPR GT
Sbjct: 278 QAIEFCAQLRRLRPDIALGADLIAGFPTETDEMFARSLDLVEACDLSLLHVFPYSPRPGT 337

Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQ----VSFNDACVGQIIEVLIEK 420
             + M  QVD N   +R     K+LRE      +   DA +G   EVLIE 
Sbjct: 338 AAAKM-PQVDGNAVKQR----AKRLREAGDAALLRRLDAEIGAAREVLIES 383


>gi|29829050|ref|NP_823684.1| hypothetical protein SAV_2508 [Streptomyces avermitilis MA-4680]
 gi|81720044|sp|Q82K95|RIMO_STRAW RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|29606156|dbj|BAC70219.1| hypothetical protein [Streptomyces avermitilis MA-4680]
          Length = 495

 Score =  155 bits (392), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 143/500 (28%), Positives = 217/500 (43%), Gaps = 66/500 (13%)

Query: 23  VPQRFFVK--SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKV 80
           +P+R  V   + GC  N  DS  +     + G++ V   +DAD+ V+NTC   E A +  
Sbjct: 1   MPERRTVALVTLGCARNEVDSEELAGRLEADGWQLVEDAEDADVAVVNTCGFVEAAKKDS 60

Query: 81  YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140
              L    +LK      G    VV  GC+A+  G+E+    P  + V+G   Y  + + L
Sbjct: 61  VDALLEANDLKG----HGRTQAVVAVGCMAERYGKELAEALPEADGVLGFDDYTNISDRL 116

Query: 141 --------------------------ERARFGKRVVDTDYSV-----EDKFERLSIVDGG 169
                                     ER   G  V    +       ED  E L+   G 
Sbjct: 117 QTILNGGIHAAHTPRDRRKLLPISPAERQSAGADVALPGHGAPEGLPEDLPEGLAPESGP 176

Query: 170 YN--RKR---GVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCE 224
               R+R      A + +  GCD+ C+FC +P  RG  ISR  S V+ E R L + GV E
Sbjct: 177 RAPLRRRLDGSPVASVKLASGCDRRCSFCAIPSFRGSFISRRPSDVLGETRWLAEQGVKE 236

Query: 225 ITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL 284
           + L+ +N N   GK L G+      LL  L+E+ G+ R+R +   P +M   LI      
Sbjct: 237 VMLVSEN-NTSYGKDL-GDIRLLETLLPELAEVDGIERVRVSYLQPAEMRPGLIDVLTST 294

Query: 285 DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETD 344
             + PY  L  Q  +  +L++M R      + +++D IRS  P   + S+FIVGFPGET+
Sbjct: 295 PKIAPYFDLSFQHSAPDVLRAMRRFGDTDRFLELLDTIRSKAPQAGVRSNFIVGFPGETE 354

Query: 345 DDFRA-----TMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLR 399
            D        T   +D IG      F YS   GT  +    ++DE+V A RL  + +   
Sbjct: 355 ADLAELERFLTGARLDAIGV-----FGYSDEEGTEAATYGHKLDEDVVAARLARVSRLAE 409

Query: 400 EQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVVL--NSKNHNIGDIIKV 453
           E      +  VG+ + VL+E    E+G  VGR    +P     VL  + +   +G +++ 
Sbjct: 410 ELVAQRAEERVGETVHVLVESIDDEEGA-VGRAEHQAPETDGQVLFTSGEGLTVGRMVEA 468

Query: 454 RI-----TDVKISTLYGELV 468
           ++      D+    L G LV
Sbjct: 469 KVVGTEGVDLVAEPLPGSLV 488


>gi|124027960|ref|YP_001013280.1| hypothetical protein Hbut_1092 [Hyperthermus butylicus DSM 5456]
 gi|123978654|gb|ABM80935.1| conserved archaeal protein [Hyperthermus butylicus DSM 5456]
          Length = 441

 Score =  155 bits (392), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 128/448 (28%), Positives = 215/448 (47%), Gaps = 25/448 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R ++++YGC +N+ D+  M  +  S+GY   N +D+AD+I++NTC +R     ++     
Sbjct: 5   RVYIETYGCALNMADTAIMRSVLSSRGYSFTNCVDEADVIIINTCTVRLDTEARMKR--- 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           RI  L     K G  L  VVAGC+A A+   + R +P   V+V     + +   +ER   
Sbjct: 62  RIAELAAIAEKTGARL--VVAGCMASAQPYTVKRIAPKA-VLVSTYNVHLVDIAVERG-- 116

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
               +D      +K + L          RG  A + I EGC   C+FC+    R    SR
Sbjct: 117 ----LDLLTPPREKPKPL-FKPTPRLMLRGKIAEVPIAEGCLGDCSFCITKIARRRVYSR 171

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            +  +V   R+L+  G  EI L GQ++  + G  L G++    +L+  + E++G   +R 
Sbjct: 172 PVENIVKLVRELVRLGAVEIRLTGQDIAVY-GIDLYGKR-LLPELVRRVIEVEGDFMVRI 229

Query: 266 TTSHPRDMSDCL-----IKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
               P  +   L     +  H  +     ++HLPVQSG DR+L+ M R +T  EYR I+ 
Sbjct: 230 GMMSPDQLEPILDEFLEVFRHPKV---FKFVHLPVQSGDDRVLRIMKRNYTVDEYRAIVR 286

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
            IR+  P + I++D IVG PGE ++ F  T+ L++++ + +    +Y+PR  T  +  L 
Sbjct: 287 EIRNKVPGVMIATDIIVGHPGEDEEAFENTVRLIEELRFERVHLAQYTPRQRTVAAG-LP 345

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440
           QV + VK +R   L + +    +  +   +G     L+   G E+G L  +      V+L
Sbjct: 346 QVPDPVKKKRSKRLTEVVMRIGLEEHRRYIGSRACALVVSRG-ERGGLDAKLYNYMPVIL 404

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
              +   G+   + + D     L G +V
Sbjct: 405 PEGSARPGEWRCIEVVDATWYDLRGRVV 432


>gi|225874941|ref|YP_002756400.1| RNA modification enzyme, MiaB-family [Acidobacterium capsulatum
           ATCC 51196]
 gi|225794112|gb|ACO34202.1| RNA modification enzyme, MiaB-family [Acidobacterium capsulatum
           ATCC 51196]
          Length = 512

 Score =  155 bits (392), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 130/448 (29%), Positives = 208/448 (46%), Gaps = 49/448 (10%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA-EKVYS 82
           P+  FV S GC  N+ DS  M  +    G         AD++V+NTC   + A  E V +
Sbjct: 19  PRIGFV-SLGCPKNLVDSEVMMGLLDRAGGVMTQDAASADILVVNTCSFIDAAKQESVDT 77

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            L   ++    R ++     ++VAGC+ +   +EI +  P V+ VVG      L ++LE 
Sbjct: 78  ILEMAQHKTTGRAQK-----LIVAGCLVERYRDEIQKNIPEVDAVVGTG---ELEKVLEA 129

Query: 143 ARFG----KRVVDTDYSV----------------EDKFERLSIVDGG--------YNRK- 173
           A           D+ +++                + +F+R    DG         Y+   
Sbjct: 130 AGLALPPAPAASDSPFTILSAGVAARPEGELREQQGRFDREQW-DGATAALPQYLYDHTT 188

Query: 174 ------RGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITL 227
                 R  +A++ I EGCD  C+FCV+P  RG   SR    VV EA+ L+  GV EITL
Sbjct: 189 PRLRATRSASAYIKIAEGCDHPCSFCVIPNLRGKFRSRRFESVVAEAQSLVAQGVREITL 248

Query: 228 LGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL 287
           +GQ+   + G+ L G K   + LL  L++I+GL+ LR+  ++P  ++  L+      D +
Sbjct: 249 IGQDTTCY-GEDL-GLKDGLALLLERLAQIEGLLWLRFLYAYPNKITGKLLDTIAKHDNI 306

Query: 288 MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDF 347
             YL +P+Q  S  +LKSM R   A    + I++ R+  P + + + FIVGFPGET +DF
Sbjct: 307 CKYLDVPLQHASGAVLKSMKRGANAEILLKTIEKARARVPGLVLRTSFIVGFPGETAEDF 366

Query: 348 RATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFND 407
                 V          F YS   G+   ++  ++      +R   L K+ +        
Sbjct: 367 ATLQQFVRDAQIDWLGVFTYSDEEGSKAFDLEGKLPRRTIEQRKRALMKQQQGISRRAKQ 426

Query: 408 ACVGQIIEVLIEKHGKEKGKLV-GRSPW 434
             VG++++VL+E   +E   L  GR+ W
Sbjct: 427 QWVGRVVDVLVEGESEETPLLWQGRTAW 454


>gi|88658127|ref|YP_507040.1| MiaB family tRNA modification protein [Ehrlichia chaffeensis str.
           Arkansas]
 gi|88599584|gb|ABD45053.1| tRNA modification enzyme, MiaB family [Ehrlichia chaffeensis str.
           Arkansas]
          Length = 412

 Score =  155 bits (391), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 126/447 (28%), Positives = 220/447 (49%), Gaps = 44/447 (9%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDA---DLIVLNTCHIREKAAEKVYSFLG 85
           V ++GC++N Y+S  ++           N++  A   D+IV+++C +  +A  +V S   
Sbjct: 4   VITFGCRLNFYESEVIK-----------NNLKKAQLDDVIVVHSCAVTNEAERQVRS--- 49

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           RIR L     ++  ++ ++VAGC  Q    E+    P V  V+G Q   +    L + + 
Sbjct: 50  RIRKL----YRDNANVKIIVAGCAVQL-NPELYVNMPGVIKVLGNQDKLKYESYLAKDKI 104

Query: 146 -GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
              ++ ++   V+D  +  S    G +R     A + IQ GC+  CTFCV+   RG   S
Sbjct: 105 IVSKIENSKEVVQDSVKGFS----GKSR-----ALIEIQNGCNHECTFCVITKARGNNRS 155

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD--GEKCTFSDLLYSLSEIKGLVR 262
             +  ++ + +  +DNG  E+   G +++ +   GLD  G++   + +   LS +  L R
Sbjct: 156 LYIEDIITKVKACVDNGYNEVVFTGVDISDF---GLDIYGQRVLGTMIKRVLSAVPQLRR 212

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LR ++    ++ D LI    +    MP+LHL +QSG++ ILK M RRH+  +  +  ++I
Sbjct: 213 LRLSSIDVAEIEDDLINIIINEPRFMPHLHLSLQSGNNLILKRMKRRHSREQVIEFCNKI 272

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
            S R ++   +D IVGFP ET++ F  T+ L+++   +    F YS R GTP + M  QV
Sbjct: 273 TSKRKEVVFGADIIVGFPTETEEMFNDTVRLIEEANISYLHVFPYSKREGTPAARM-PQV 331

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
            + VK  R+  L +   ++   F    +     V++EK G       GR+     V    
Sbjct: 332 VQEVKKRRVKHLLEFAEKRLHDFYSTLLHTKQSVVVEKSG------TGRAENFALVKFLD 385

Query: 443 KNHNIGDIIKVRITDVKISTLYGELVV 469
            N  +  I++V I  V+ + L G++ V
Sbjct: 386 DNVQLQSIVEVEIKRVEGNYLVGQVFV 412


>gi|163784661|ref|ZP_02179488.1| hypothetical protein HG1285_10340 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880071|gb|EDP73748.1| hypothetical protein HG1285_10340 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 197

 Score =  155 bits (391), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 77/199 (38%), Positives = 128/199 (64%), Gaps = 8/199 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++++++++GCQMN+ DS +M  +  + GYE   S ++AD+I++NTC +REK  +KV S L
Sbjct: 2   KKYYIRTFGCQMNINDSQKMAGILKTLGYEPAESWEEADVILVNTCSVREKPDQKVLSAL 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           G  + +KN    +  D ++ V GC+AQ  G EIL+++P +++V G    + LP+LLE A+
Sbjct: 62  GEFKKVKN----KNPDAVIGVCGCLAQRAGYEILQKAPFIDMVFGTTNIHHLPQLLEEAQ 117

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYN-RKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            G + V+    +ED  E  + +D     R    TA++TI  GCDK CT+C+VP TRG E 
Sbjct: 118 QGNKAVEI---IEDIDENETQLDSYPTVRDNKYTAYVTIIRGCDKKCTYCIVPATRGKER 174

Query: 204 SRSLSQVVDEARKLIDNGV 222
           SR + +++ E + L+++GV
Sbjct: 175 SRRIGEILQEVQYLVEDGV 193


>gi|68171458|ref|ZP_00544845.1| Protein of unknown function UPF0004:MiaB-like tRNA modifying enzyme
           [Ehrlichia chaffeensis str. Sapulpa]
 gi|67999119|gb|EAM85782.1| Protein of unknown function UPF0004:MiaB-like tRNA modifying enzyme
           [Ehrlichia chaffeensis str. Sapulpa]
          Length = 412

 Score =  155 bits (391), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 126/447 (28%), Positives = 220/447 (49%), Gaps = 44/447 (9%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDA---DLIVLNTCHIREKAAEKVYSFLG 85
           V ++GC++N Y+S  ++           N++  A   D+IV+++C +  +A  +V S   
Sbjct: 4   VITFGCRLNFYESEVIK-----------NNLKKAQLDDVIVVHSCAVTNEAERQVKS--- 49

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           RIR L     ++  ++ ++VAGC  Q    E+    P V  V+G Q   +    L + + 
Sbjct: 50  RIRKL----YRDNANVKIIVAGCAVQL-NPELYVNMPGVIKVLGNQDKLKYESYLAKDKI 104

Query: 146 -GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
              ++ ++   V+D  +  S    G +R     A + IQ GC+  CTFCV+   RG   S
Sbjct: 105 IVSKIENSKEVVQDSVKGFS----GKSR-----ALIEIQNGCNHECTFCVITKARGNNRS 155

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD--GEKCTFSDLLYSLSEIKGLVR 262
             +  ++ + +  +DNG  E+   G +++ +   GLD  G++   + +   LS +  L R
Sbjct: 156 LYIEDIITKVKACVDNGYNEVVFTGVDISDF---GLDIYGQRVLGTMIKRVLSAVPQLRR 212

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LR ++    ++ D LI    +    MP+LHL +QSG++ ILK M RRH+  +  +  ++I
Sbjct: 213 LRLSSIDVAEIEDDLINIIINEPRFMPHLHLSLQSGNNLILKRMKRRHSREQVIEFCNKI 272

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
            S R ++   +D IVGFP ET++ F  T+ L+++   +    F YS R GTP + M  QV
Sbjct: 273 TSKRKEVVFGADIIVGFPTETEEMFNDTVRLIEEANISYLHVFPYSKREGTPAARM-PQV 331

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
            + VK  R+  L +   ++   F    +     V++EK G       GR+     V    
Sbjct: 332 VQEVKKRRVKHLLEFAEKRLHDFYSTLLHTKQSVVVEKSG------TGRAENFALVKFLD 385

Query: 443 KNHNIGDIIKVRITDVKISTLYGELVV 469
            N  +  I++V I  V+ + L G++ V
Sbjct: 386 DNVQLQSIVEVEIKRVEGNYLVGQVFV 412


>gi|148261480|ref|YP_001235607.1| MiaB-like tRNA modifying enzyme [Acidiphilium cryptum JF-5]
 gi|146403161|gb|ABQ31688.1| MiaB-like tRNA modifying enzyme [Acidiphilium cryptum JF-5]
          Length = 411

 Score =  155 bits (391), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 107/350 (30%), Positives = 171/350 (48%), Gaps = 25/350 (7%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           + ++GC++N ++S  M      +G+     + DA  +++NTC +  +A  +    + R  
Sbjct: 5   ILTFGCRLNAFESEVM------RGHAEAAGLGDA--VIVNTCAVTAEAERQARQAIRRAH 56

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
               +         ++V GC AQ +         +  V+   +     PE   R+     
Sbjct: 57  RADPA-------AKIIVTGCAAQIDPAAWSSIEGVARVLGNAEKLT--PEAW-RSEAPVL 106

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           V D    ++ +     +++G   R R   AF+ +Q+GCD  CTFC++PY RG   S  L 
Sbjct: 107 VADI---MQLRQTAAHLIEGFGTRAR---AFIEVQQGCDHRCTFCIIPYGRGPSRSIPLG 160

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
            VV++ R L+ NG  E+ L G ++ ++ G  L G           L+ +  L RLR ++ 
Sbjct: 161 AVVEQVRTLVANGYNEVVLTGVDLTSY-GADLPGAPKLGQLCRRLLAAVPDLPRLRLSSI 219

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
            P ++ D L +       LMP+LHL VQ+GSD ILK M RRH  +   +   R R++RPD
Sbjct: 220 DPAEIDDDLWRLLESEPRLMPHLHLSVQAGSDLILKRMKRRHLRHHVIEAAARARALRPD 279

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           IA+ +D I GFP ET+  F  T+ LVD  G      F +S R GTP + +
Sbjct: 280 IALGADLIAGFPTETEAHFAETLALVDDAGLDYLHVFPFSARKGTPAARI 329


>gi|86747486|ref|YP_483982.1| MiaB-like tRNA modifying enzyme [Rhodopseudomonas palustris HaA2]
 gi|86570514|gb|ABD05071.1| MiaB-like tRNA modifying enzyme [Rhodopseudomonas palustris HaA2]
          Length = 422

 Score =  155 bits (391), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 127/406 (31%), Positives = 182/406 (44%), Gaps = 37/406 (9%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           ++GC++N ++S  +       G          + IV+N+C +  +A  +       IR L
Sbjct: 7   TFGCRLNAFESEVIRREAEGAGL--------TETIVVNSCAVTNEAVAQARQ---SIRKL 55

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
           K +R     D  +VV GC AQ E          V+ V+G     R  E    AR      
Sbjct: 56  KRAR----PDARIVVTGCAAQTEPATFAAMDE-VDRVIGNDDKIRT-EAWREARAAFDAD 109

Query: 151 DTDYSVEDKFERLSI----------VDG---GYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197
                 E+K     I          VDG   G  R      F+ +Q GCD  CTFC++PY
Sbjct: 110 AFGLGNEEKIAVADIMAVREMAPHLVDGYQSGLPR-----VFVQVQNGCDHRCTFCIIPY 164

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257
            RG   S  +  VVD+ R L + G  EI L G ++ ++ G  L G     + +   L  +
Sbjct: 165 GRGNSRSVPVGAVVDQVRALAERGHAEIVLTGVDLTSY-GADLPGTPKLGTLVKKVLRHV 223

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
             L RLR ++    +    L+ A    + LMP+LHL +Q+G D ILK M RRH   +   
Sbjct: 224 PELRRLRISSIDSIEADRDLLDALASEERLMPHLHLSLQAGDDLILKRMKRRHARQDAID 283

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
             D +R +RPDIA+ +D I GFP ETD  F+ ++DLV + G      F YS R GTP + 
Sbjct: 284 FCDEVRRLRPDIALGADLIAGFPTETDAMFQRSLDLVAECGLTFLHVFPYSKRPGTPAAR 343

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK 423
           M  Q+D  V  +R   L+            A +G    VLIE   +
Sbjct: 344 M-PQLDGRVVRQRAAQLRAAGEAALQKRLAAEIGATRAVLIESAAQ 388


>gi|270157773|ref|ZP_06186430.1| MiaB family RNA modification enzyme [Legionella longbeachae D-4968]
 gi|289163959|ref|YP_003454097.1| hypothetical protein LLO_0613 [Legionella longbeachae NSW150]
 gi|269989798|gb|EEZ96052.1| MiaB family RNA modification enzyme [Legionella longbeachae D-4968]
 gi|288857132|emb|CBJ10948.1| putative conserved hypothetical protein [Legionella longbeachae
           NSW150]
          Length = 436

 Score =  155 bits (391), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 136/455 (29%), Positives = 221/455 (48%), Gaps = 47/455 (10%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC   + DS R+     +QGYE V+S  DA ++V+NTC   + A ++       +  +
Sbjct: 9   SLGCPKALVDSERIITQLRAQGYELVSSYQDAGVVVINTCGFIDSAVKE------SLDTI 62

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
           K +  + G    V+V GC+  A+ + I    P V  + G   Y  +   + +        
Sbjct: 63  KEAMAENG---RVIVTGCLG-AKADIIKEACPDVLHISGAHAYEEVVNAVHQHLPPPT-- 116

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
                  D F +L I   G        A+L I EGC++ CTFC++P  RG   S  ++QV
Sbjct: 117 -------DPFTQL-IPPQGIKLTPRHYAYLKISEGCNQKCTFCIIPTMRGKLQSYPMAQV 168

Query: 211 VDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYSLSEIKG 259
           + EA++L D GV EI ++ Q+ +A           W+GK ++     F DL   L ++  
Sbjct: 169 LTEAKRLKDAGVHEILVISQDTSAYGVDTRYQPVNWQGKTINTR---FFDLCEQLGQLGI 225

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
            +RL Y   +P    D +I    D  +++PYL +P+Q  + +ILK+M R  ++      I
Sbjct: 226 WIRLHYVYPYPH--VDEIIPLMRD-GLILPYLDIPLQHANSKILKTMKRPASSENTLLRI 282

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
              R + PDI + S FIVGFPGET+++F   +D +++    +   FKYSP  G   + + 
Sbjct: 283 ASWREICPDITLRSTFIVGFPGETEEEFEELLDFLEEAQLDRVGCFKYSPVEGAKANELS 342

Query: 380 EQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKE-KGKLVGRSPW 434
           + V E +K E   R + LQ ++   ++   ++ VG+   V+I E HG +   +  G +P 
Sbjct: 343 DPVPEEIKEERYHRFMQLQAEISRDKL---ESKVGKTQTVIIDEIHGDQIIARSKGDAPE 399

Query: 435 LQSVVLNSKNHNI--GDIIKVRITDVKISTLYGEL 467
           +  +V+   N  I  G   +V ITD     LY E 
Sbjct: 400 IDGLVILPPNPGIKSGSFAEVIITDSDDYDLYAEF 434


>gi|317051787|ref|YP_004112903.1| MiaB-like tRNA modifying enzyme [Desulfurispirillum indicum S5]
 gi|316946871|gb|ADU66347.1| MiaB-like tRNA modifying enzyme [Desulfurispirillum indicum S5]
          Length = 426

 Score =  155 bits (391), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 113/398 (28%), Positives = 194/398 (48%), Gaps = 24/398 (6%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           Q F++K+ GC++N  +S  M++     G  +      AD +++N+C +  +A  K  ++ 
Sbjct: 2   QAFYIKTLGCRLNQAESAMMKEELILSGMRQAEHPGQADFVLVNSCTVTARADSKTLAYA 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R R       +E     + + GC+AQ   E++L   P V++V G Q    L   L R  
Sbjct: 62  RRAR-------RENPAATIAIIGCMAQTAMEDLLAL-PYVDMVFGNQEKNALVTTLLRQV 113

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
                V +++S   K    +  D   N        L IQ+GCD  C++C+V   RG   S
Sbjct: 114 PHSVGVLSEHSAPLKLIAQASGDERVN--------LKIQDGCDNTCSYCLVTIARGPSRS 165

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
             +  V++ A +L  +   EI L G ++ ++ GK L  E  +   L+  L EI  L RLR
Sbjct: 166 IKMEHVLETAAELA-HTFDEIILTGVHIGSY-GKDL-AEPSSLGRLMERLLEIPHLGRLR 222

Query: 265 YTTSHPRDMSDCLIK--AHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
            ++  P ++ + ++   +H  L     +LH+ +QS  DRIL  MNR +   E  ++++++
Sbjct: 223 LSSIEPAEIDETILGLLSHPKL---CRHLHISLQSADDRILALMNRHYRWSEALKVMEQV 279

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           +S+ P + I +D I GFPGE+   F +    ++         F +S R GT   ++ +Q 
Sbjct: 280 KSIDPFLKIGTDIIAGFPGESPATFESICQRIESSPLDYLHIFPFSGRPGTQAVDLPDQC 339

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
            ++ K  R+  LQ      Q  F+ +C+GQ   VL+EK
Sbjct: 340 PDHEKHARVQRLQAVAAHLQERFHRSCLGQQRWVLLEK 377


>gi|312076345|ref|XP_003140819.1| CDK5 regulatory subunit-associated protein 1-like 1 [Loa loa]
 gi|307764018|gb|EFO23252.1| CDK5 regulatory subunit-associated protein 1-like 1 [Loa loa]
          Length = 478

 Score =  155 bits (391), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 116/432 (26%), Positives = 210/432 (48%), Gaps = 28/432 (6%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           Q+ +++++GC  N  DS +M  +    G++  N  +DA L +LN+C ++  +  ++ + +
Sbjct: 44  QKIYIRTWGCTHNTSDSEQMAGLLSEAGHQLTNKKEDASLWILNSCTVKTPSETQLENTV 103

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
              R L            ++VAGCV+QAE    LR    +++V G +    + + +E   
Sbjct: 104 KEARKLNK---------FIIVAGCVSQAEPN--LRFLEGISIV-GVKQIECVTQAVEETL 151

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G  V        +    L  +     RK      L I  GC   CT+C     RG  +S
Sbjct: 152 KGNCVRFLSQRKPNSNLLLPKI-----RKNKFIEILAISSGCLNHCTYCKTKSARGNLVS 206

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI--KGLVR 262
             L  +++ AR    +G  E+ L  +++ AW G+ +D       DLL +L EI  +G + 
Sbjct: 207 FPLDSLLERARNAFADGCKELWLTSEDLGAW-GRDID---MVLPDLLNALVEIIPEGCM- 261

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDV--LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
           LR   ++P  + D L +    L+   +  +LH+PVQS SD +L  M R +T  ++ +++D
Sbjct: 262 LRLGMTNPPYILDFLEEISEILNHPRVYSFLHIPVQSASDAVLADMRREYTCSDFCRVVD 321

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
            +    P+I I++DFI  +P ET  DF  +M LV K  +   F  ++  R+GTP +N L+
Sbjct: 322 YMTQNVPNIYIATDFICAYPTETKSDFEESMALVRKYRFPSLFINQFYSRIGTPAAN-LK 380

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440
           ++D  V+A R       L      ++   +G+   VL+ +   ++   VG + + +  ++
Sbjct: 381 KID-TVEARRRTAEMSTLFRSYSRYDKKRIGEKHRVLVCELATDQQHYVGHNKYYEHFLI 439

Query: 441 NSKNHNIGDIIK 452
           +SK   +G  ++
Sbjct: 440 SSKKCLLGKWVE 451


>gi|303233275|ref|ZP_07319947.1| ribosomal protein S12 methylthiotransferase RimO [Atopobium vaginae
           PB189-T1-4]
 gi|302480665|gb|EFL43753.1| ribosomal protein S12 methylthiotransferase RimO [Atopobium vaginae
           PB189-T1-4]
          Length = 532

 Score =  155 bits (391), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 120/449 (26%), Positives = 201/449 (44%), Gaps = 51/449 (11%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA-AEKVYSFLGRIRN 89
           + GC  N  D+ RM  +  + G+   ++ DDAD++++NTC     A +E +   L   + 
Sbjct: 84  TLGCAKNQVDTDRMRALLLASGFREAHNTDDADVVLINTCSFLATATSESIDVTLDLAQE 143

Query: 90  LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL------LERA 143
            +N          +++ GCV    G+ +    P V   V       +  +      LE  
Sbjct: 144 QQNGITT----CPIIMCGCVPARYGKALTGELPEVAAFVKANDEDGIIGVVCDVLGLEHP 199

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            F         S  ++  R ++       K   +AF+ I EGC + C FC +P+ RG   
Sbjct: 200 SF---------SFVEELTRRAL-----RTKEATSAFVKISEGCSRMCAFCAIPHIRGPYA 245

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSD---LLYSLSEIKGL 260
           SR    ++ E   L+D G+ EI L+GQ+   W         C F +   L + L ++   
Sbjct: 246 SRPPQDILAEVDMLVDAGIHEIILIGQDTGIW--------GCDFKEPKTLAWLLQQVAHH 297

Query: 261 VR-----LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
           VR     +R     P  M+  LI    D   ++PY+ +P+Q  S+++LK M R  +A E 
Sbjct: 298 VRGKQCWIRVLYLQPEGMTPELISTIRDTPEVLPYIDIPIQHCSEQVLKRMGRTGSAQEL 357

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
            ++   +R   P++ + +  +VGFPGET  +    +D      +     F YS   GT  
Sbjct: 358 HELFATLRREIPNMVLRTTGMVGFPGETAQEADELVDFFKAEEFDYMSVFSYSQEDGTTA 417

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKG--KLVGRS 432
           + M +QV    K ER   L+    E   S     VG++++V+I+ K   + G  +L+G +
Sbjct: 418 ARMRDQVSAQTKLERTQRLRDVAEELGFSATAKHVGEVVDVIIDSKDYNDDGSFELIGHA 477

Query: 433 PWLQ------SVVLNSKNHNIGDIIKVRI 455
            W Q      +V L +    IGDI++VR+
Sbjct: 478 -WFQAPDCDGAVHLPADAGEIGDIVRVRL 505


>gi|4530613|gb|AAC38321.2| unknown [Ralstonia eutropha H16]
          Length = 505

 Score =  154 bits (390), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 132/479 (27%), Positives = 224/479 (46%), Gaps = 69/479 (14%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  FV S GC   + DS ++     ++GY    + D ADL+V+NTC   ++A ++    
Sbjct: 61  PRVGFV-SLGCPKALVDSEQIITQLRAEGYAISGTYDGADLVVVNTCGFIDEAVQESLDA 119

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQ---AEGEEILRR-SPIVNVVVGPQTYYRLPEL 139
           +G         + E G   V+V GC+     A G +I+    P V  V GP   + L E+
Sbjct: 120 IGEA-------LTENGK--VIVTGCLGAKKDAAGHDIVSSVHPKVLAVTGP---HALGEV 167

Query: 140 LERARFGKRVVDTDYS-VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
           ++        V T      D F  L +   G        A+L I EGC+  C+FC++P  
Sbjct: 168 MQ-------AVHTHLPKPHDPFTDL-VPAAGIKLTPKHYAYLKISEGCNHRCSFCIIPSM 219

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTF 247
           RG  +SR +++V+ EA  L   GV E+ ++ Q+ +A           W G+ L   K   
Sbjct: 220 RGDLVSRPVAEVMLEAENLFKAGVKELLVISQDTSAYGVDVKYRTGFWNGRPL---KTRM 276

Query: 248 SDLLYSLSEIKG----LVRLRYTTSHPR--DMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
           ++L+ +L E+       VRL Y   +P   ++   + + H     ++PYL +P+Q     
Sbjct: 277 TELVAALGELAAQYGAWVRLHYVYPYPHVDEIIPLMSQGH-----VLPYLDVPLQHAHPD 331

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVR---PDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           +LK M R   A    + +DRIR+ R   P++ I S FI GFPGET+ +F+  +D + +  
Sbjct: 332 VLKRMKRPANA---EKTMDRIRAWREICPELTIRSTFIAGFPGETEAEFQTLLDFIAEAE 388

Query: 359 YAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI 418
             +   F YSP  G   +++   + + V+ ER     +   E         VGQ + VL+
Sbjct: 389 LDRVGCFAYSPVEGATANDLPGALPDEVREERRARFMEVAEEVSARRLQRKVGQTLRVLV 448

Query: 419 EKHGKEKGKLVGRS----PWLQSVVL------NSKNHNIGDIIKVRITDVKISTLYGEL 467
           ++  ++ G  +GRS    P +  +V       +++ +  G+ + V+IT      L+G +
Sbjct: 449 DEVNQDGG--IGRSSADAPEIDGLVYIAPPERHAQRYRAGEFVDVKITGADGHDLWGAV 505


>gi|170761706|ref|YP_001787717.1| RNA modification protein [Clostridium botulinum A3 str. Loch Maree]
 gi|238065367|sp|B1KWJ5|RIMO_CLOBM RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|169408695|gb|ACA57106.1| RNA modification enzyme, MiaB family [Clostridium botulinum A3 str.
           Loch Maree]
          Length = 445

 Score =  154 bits (390), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 131/439 (29%), Positives = 220/439 (50%), Gaps = 33/439 (7%)

Query: 31  SYGCQMNVYDSLRMEDMFF--SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           S GC  N  DS   E M +  ++  E V    +A +I++NTC   E A E+  + + ++ 
Sbjct: 10  SLGCDKNRIDS---ELMLYKLNEEAELVKDPKEAQVIIVNTCGFIETAKEESINTILQMA 66

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER-ARFGK 147
           + K +        ++VV GC+ Q    E+    P +++++G   Y +L E ++   + G+
Sbjct: 67  SYKKTH----NCKVLVVTGCLTQRYKGELKELIPEMDIMLGVNDYDKLLESIKVFLKSGE 122

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNR---KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
           +      S   K+    I +G  NR       TA++ I EGC+ FCT+C +P  RG   S
Sbjct: 123 K------SFYHKYSDTKINEG--NRILTTPTYTAYVRIAEGCNNFCTYCAIPRIRGKYRS 174

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R    ++ E   L   GV EI L+ Q+   + G  + G+K    +LL  +S+++G+  +R
Sbjct: 175 RKKENILKEVENLAKQGVKEIILIAQDTTMY-GIDIHGKK-VLHELLRDISKVEGVKWIR 232

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
               +P ++++ LI+   + D +  YL LP+Q  S+ +LK M R+ T      II ++R 
Sbjct: 233 LLYCYPEEITEELIEEIKNNDKVCKYLDLPIQQISNSVLKRMGRKTTKETIINIIKKLRK 292

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD- 383
               I + +  IVGFPGET+ +F    + V  I   +   FKYS   GT  + M EQ+D 
Sbjct: 293 EIEGITLRTSLIVGFPGETEGEFSELKEFVSDIKLDKLGVFKYSKEEGTSAALMEEQIDE 352

Query: 384 --ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE--KHGKEKGKLVGRSPWLQSVV 439
             +  + E ++ LQ+ + +     N   +G+I EV++E  K     G+    SP +   +
Sbjct: 353 EIKEKREEEIMILQQSISK---DINKEKIGKIYEVIVEGIKEDMYYGRNYEMSPEIDGEI 409

Query: 440 LNSKNHN--IGDIIKVRIT 456
              K+ N  IGDIIKV++T
Sbjct: 410 YFEKDENVKIGDIIKVKVT 428


>gi|170741815|ref|YP_001770470.1| MiaB-like tRNA modifying enzyme [Methylobacterium sp. 4-46]
 gi|168196089|gb|ACA18036.1| MiaB-like tRNA modifying enzyme [Methylobacterium sp. 4-46]
          Length = 423

 Score =  154 bits (390), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 122/401 (30%), Positives = 181/401 (45%), Gaps = 26/401 (6%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V S+GC++N  +          +   R       DL+V+NTC +  +A  +        R
Sbjct: 5   VLSFGCRLNAVEG---------EAVRRAAGPAGGDLLVVNTCAVTAEATRQA-------R 48

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
                  +E   L +VV GC A+ E     R  P V+ +VG           + A  G  
Sbjct: 49  KAIRQAARERPGLRIVVTGCGAEVEAR-AYRAMPEVSGLVGNHAKLAPATWSDGAWSGGT 107

Query: 149 VVDTDYSVEDKFERLSIV------DGGYNRKRGVT-AFLTIQEGCDKFCTFCVVPYTRGI 201
                 +  D     +++           R  G T AFL +Q GCD  CTFCV+P+ RG 
Sbjct: 108 WSGESRAAPDPAGVGAVMAVRHASPAPAPRMPGRTRAFLPVQNGCDHRCTFCVIPFGRGP 167

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
             S  ++  + +AR L+++GV EI L G ++ A+ G+ L         +   L  +  L 
Sbjct: 168 SRSLPVAAAIAQARDLVEDGVREIVLTGIDLTAY-GRDLGAGTGLGGLVKALLRALPDLA 226

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           RLR ++    +    L+ A      LMP LHL +Q+G D +LK M RRHT  +     + 
Sbjct: 227 RLRLSSIDSVEADADLLDALATEPRLMPQLHLSLQAGDDLVLKRMRRRHTRADAVAFCET 286

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R +RP+I + +D I GFP ET+  F  ++ LV++ G  Q   F YSPR  TP + M  Q
Sbjct: 287 VRRLRPEIVLGADLIAGFPTETEAQFARSLALVEECGLTQLHVFPYSPRPETPAARM-PQ 345

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422
           V   V   R   L++           A VGQ  EVL E+ G
Sbjct: 346 VPGEVARARAARLREAGAAALARRLAAEVGQRREVLAERGG 386


>gi|291003708|ref|ZP_06561681.1| hypothetical protein SeryN2_04222 [Saccharopolyspora erythraea NRRL
           2338]
          Length = 473

 Score =  154 bits (390), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 119/457 (26%), Positives = 205/457 (44%), Gaps = 47/457 (10%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC  N  DS  +      +G++ ++    AD++V+NTC   E A +     L    + 
Sbjct: 3   TLGCARNEVDSEELAGNLHQRGWDLIDDESSADVVVVNTCGFVESAKKDSVDTLLAASDT 62

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
                       VV  GC+A+  G E+    P  + V+G   Y  L E L+    G+ + 
Sbjct: 63  GAK---------VVAVGCMAERYGAELAEHLPEADAVLGFDHYGNLAERLDDVLAGRAI- 112

Query: 151 DTDYSVEDKFERLSIVD-----------------GGYNRKRGVT---------AFLTIQE 184
              +  +D+ + L I                   G     RG+          A L +  
Sbjct: 113 -QPHQPQDRRKMLPITPVARPAAAAASEVAVPGHGWVPSTRGIARRRLDDSPLAALKLAS 171

Query: 185 GCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK 244
           GCD+ C+FC +P  RG  +SR   +V+ EA  L + G  E+ L+ +N  ++ GK L   +
Sbjct: 172 GCDRRCSFCAIPSFRGSFLSRQPEEVLGEAAWLAEQGAKELFLVSENSTSY-GKDLSDPR 230

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304
                LL  L+ I G+ R+R +   P +    L++A      + PY  L  Q  S+++L+
Sbjct: 231 A-LETLLPRLAGIDGVDRVRVSYLQPAETRPGLVRAIATTPGVAPYFDLSFQHSSEKVLR 289

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
            M R  +   +  +I++IR + P+  I S+ IVGFPGET++DF    D + +        
Sbjct: 290 RMRRFGSTESFLALIEQIRELAPEAGIRSNVIVGFPGETEEDFEELQDFLTRARLDAVGV 349

Query: 365 FKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE 424
           F YS   GT  +    ++D +V A R+  +     E      +  VG  + VL+E+   E
Sbjct: 350 FGYSDEDGTEAAGFDGKLDADVVAARVEQVSALADELVAQRAEDRVGTEVRVLVER--DE 407

Query: 425 KGKLVGRS----PWL--QSVVLNSKNHNIGDIIKVRI 455
            G++ GR+    P +  + VV+++    +G+++  R+
Sbjct: 408 DGEVTGRAEHQGPEVDGECVVVDAGGAGVGEVVHCRV 444


>gi|255536060|ref|YP_003096431.1| possible 2-methylthioadenine synthetase [Flavobacteriaceae
           bacterium 3519-10]
 gi|255342256|gb|ACU08369.1| possible 2-methylthioadenine synthetase [Flavobacteriaceae
           bacterium 3519-10]
          Length = 440

 Score =  154 bits (390), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 128/450 (28%), Positives = 216/450 (48%), Gaps = 41/450 (9%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC  NVYDS  +     + G ++V   D  D++V+NTC   + A E+  + +      
Sbjct: 15  TLGCSKNVYDSEVLMGQLQANG-KKVVHEDRGDIVVINTCGFIDNAKEESINTILDFVEA 73

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
           KN     G    V V GC+++    +++R  P V+   G +    LP LL++       +
Sbjct: 74  KNR----GEVEKVFVTGCLSERYKPDLIREIPDVDQYFGTRD---LPILLKQ-------L 119

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
             DY  E   ER++     +       A+L I EGCD+ C+FC +P  RG  IS  +  +
Sbjct: 120 GADYKHELIGERMTTTPKHF-------AYLKIAEGCDRPCSFCAIPLMRGKNISTPIENL 172

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYTTSH 269
           V EA KL   GV E+ L+ Q++  +   GLD  +K    DLL  L ++ G+  +R   + 
Sbjct: 173 VIEAEKLAKKGVKELILIAQDLTYY---GLDLYKKRALGDLLLRLVKVDGIEWIRLHYAF 229

Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329
           P    + +++   +   +  Y+ +P+Q  +  ILK+M R  +  +   ++D+ R   P++
Sbjct: 230 PTGFPEDVLEIIKNEPKVCNYIDIPLQHINSDILKAMKRGTSHEKTNALLDKFREKVPNM 289

Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK-- 387
           AI +  IVGFPGET++ F+   + V    + +   F YS    T    + + V + VK  
Sbjct: 290 AIRTTLIVGFPGETEERFQEMKEWVRTQRFDRLGCFTYSHEENTTAFVLEDNVQQEVKEA 349

Query: 388 -AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVVLNS 442
             E ++ LQ ++  ++   N   +G+    + ++  KE    VGR    SP + + VL S
Sbjct: 350 RVEEIMELQSQISWEK---NQEKIGKTFRCIFDR--KEGNYFVGRTEFDSPDVDNTVLVS 404

Query: 443 KNHN---IGDIIKVRITDVKISTLYGELVV 469
             +    IG    +RIT  +   LYGE+V 
Sbjct: 405 AENTYLAIGTFENIRITSAEEFDLYGEVVT 434


>gi|320538377|ref|ZP_08038252.1| MiaB-like tRNA modifying enzyme [Treponema phagedenis F0421]
 gi|320144762|gb|EFW36503.1| MiaB-like tRNA modifying enzyme [Treponema phagedenis F0421]
          Length = 454

 Score =  154 bits (390), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 108/417 (25%), Positives = 204/417 (48%), Gaps = 35/417 (8%)

Query: 27  FFV--KSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDAD---LIVLNTCHIREKAAEKVY 81
           FF+  ++ GC++N  +S  +  +F  QG++   S  + D   L ++NTC +  KA +K  
Sbjct: 6   FFICPETLGCRLNQVESESLAVLFSLQGFQVHVSPQEPDHTILCIVNTCTVTSKAEQKA- 64

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ--TYYRLPEL 139
                 R L    +++    +++V GC A+ EG  I      V    G +     +LP+L
Sbjct: 65  ------RRLIRLLLQKFPYAVILVTGCYAELEGRTIETIDSRVISFPGKKKDALKKLPKL 118

Query: 140 LERARFGKRVVDTDYSVEDKFERLSIV-DGGYNRKRGVTAF--------------LTIQE 184
           L +      +  TD  + D  E L  + +   + K+    F              L IQ+
Sbjct: 119 LYQLLEKNSMRLTDSYIADVSEILQFLQNTDLDSKKDSEMFALSTAHFLFHSRATLKIQD 178

Query: 185 GCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK 244
           GC+  C +C + + RG  +S  +++V+  A+ + D G  E+ L G N++ ++ +G +   
Sbjct: 179 GCNSACAYCRIRFARGKSVSLPVTEVIRRAQAIEDEGFAELVLSGVNLSQYKSEGKN--- 235

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304
             F+D+L  L +    + +R ++ +P  ++   +K   +   + P+ HL +QSGS+ IL 
Sbjct: 236 --FADVLQQLLDETKKIHIRISSLYPESITPTFLKV-AENPRIAPHFHLSIQSGSNAILN 292

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
           +M+R +TA +   ++  +RS++ +  +  D I GFPGET +DF  T+ L   + +    +
Sbjct: 293 AMHRAYTADDIVSVVTALRSIKENPFLGCDIIAGFPGETAEDFEKTLSLCTDLRFTGIHA 352

Query: 365 FKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKH 421
           F +S R GT  + M  QV + +  +R+  LQ   +E    +     G+ +  ++EK+
Sbjct: 353 FPFSARPGTEAAGMKGQVPQRIAGKRVAMLQALAKEHYKDYLAYWDGKTLFAVVEKY 409


>gi|300727621|ref|ZP_07061010.1| ribosomal protein S12 methylthiotransferase RimO [Prevotella
           bryantii B14]
 gi|299775141|gb|EFI71744.1| ribosomal protein S12 methylthiotransferase RimO [Prevotella
           bryantii B14]
          Length = 437

 Score =  154 bits (390), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 125/454 (27%), Positives = 211/454 (46%), Gaps = 43/454 (9%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDD--ADLIVLNTCHIREKAAEKVYSFLGR 86
           V S GC  N+ DS  +  +F + GY+ V    +   ++ V+NTC   E A E+  + +  
Sbjct: 8   VVSLGCSKNLVDSETLMKLFETNGYKCVADSKNPQGEIAVINTCGFIETAKEESINTILE 67

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF- 145
               KN    EG    + V GC++Q   +E+    P V+   G   Y  L + L ++   
Sbjct: 68  FVERKN----EGKLKKLFVMGCLSQRYQKELEAELPEVDKFYGKFNYKLLLQDLGKSDII 123

Query: 146 ---GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
              GKR + T +                       A+L I EGCD+ C +C +P   G  
Sbjct: 124 TCDGKRHLTTPHHY---------------------AYLKIAEGCDRHCAYCAIPIMTGKH 162

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR + +++DE + L++ GV E  ++ Q +  + G  +DG K   ++L+  +++I G+  
Sbjct: 163 VSRPMQEILDEVKNLVEQGVKEFQVIAQELTYY-GIDIDG-KHHITELISKMADIPGVKW 220

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R   ++P      L+    + D +  YL + +Q  SD +L  M+R  T  E   +I  I
Sbjct: 221 IRLHYAYPNQFPMDLLDVIRERDNVCKYLDIALQHISDNVLSRMHRHVTKQETIDLIKAI 280

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE-Q 381
           R   P I I +  +VGFPGET++D++   + V    + +  +F YS   GT  +   E  
Sbjct: 281 RERVPGITIRTTLLVGFPGETEEDYQELQEFVKWARFERMGAFAYSEEEGTYSAEHYEDD 340

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQS 437
           V ++VK  RL  L     +         VG++++V+I++  KE    +GR    SP +  
Sbjct: 341 VPDDVKQHRLDELMAIQEQISTEIEAEKVGKVLKVIIDR--KEGDYYIGRTEFSSPEVDP 398

Query: 438 VVL---NSKNHNIGDIIKVRITDVKISTLYGELV 468
            VL   N +   +G   +V+I D     L G +V
Sbjct: 399 EVLIPVNERQLRVGSFYQVKIVDSSEFDLTGTVV 432


>gi|332024358|gb|EGI64557.1| CDKAL1-like protein [Acromyrmex echinatior]
          Length = 539

 Score =  154 bits (390), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 127/465 (27%), Positives = 210/465 (45%), Gaps = 49/465 (10%)

Query: 22  IVP--QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEK 79
           I+P  Q  +VK++GC  N  D+  M     S GY        ADL +LN+C ++  A + 
Sbjct: 56  IIPGTQTIYVKTWGCTHNSSDTEYMTGQLASYGYNLTEDKLKADLWLLNSCTVKSPAED- 114

Query: 80  VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL 139
                 + RN      K G    VVVAGCV Q   +    +      V+G Q   R+ E+
Sbjct: 115 ------QFRNEIEYGKKIGKH--VVVAGCVPQGAPKSSFLQG---LSVIGVQQIDRVVEV 163

Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYN------RKRGVTAFLTIQEGCDKFCTFC 193
           +E    G  V         + + L    GG +      R+  +   + I  GC   CT+C
Sbjct: 164 VEETLKGNTV-----RFLQQKKDLGKKTGGASLNLPKVRRNPLIEIIAINTGCLNQCTYC 218

Query: 194 VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS 253
              + RG   S    ++V+ A++  + GVCE+ L  ++  A+ G+ +         LL+ 
Sbjct: 219 KTKHARGELGSYPPEEIVERAKQAFEEGVCELWLTSEDTGAY-GRDIG---TNLPKLLWQ 274

Query: 254 LSEIK--------GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
           L ++         G+    Y   H  +M+  L  +      +  +LH+PVQSGSD +L  
Sbjct: 275 LIDVIPDGCMMRIGMTNPPYILEHLDEMTKILRHSK-----VYSFLHIPVQSGSDHVLAD 329

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           M R +T  E+  +++ +    P + I++D I GFP ET+ DF  TM L  K  +   F  
Sbjct: 330 MKREYTCAEFEHVVNFLSERVPGLTIATDIICGFPTETEMDFEETMTLCQKYKFPSLFIN 389

Query: 366 KYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDAC--VGQIIEVLIEKHGK 423
           ++  R GTP + M       V A+++    K+L E   S+      VG I +VL+ +   
Sbjct: 390 QFFSRPGTPAARM-----PKVPAQKVKTRTKRLSEFFQSYEPYGHKVGLIQKVLVTEVSH 444

Query: 424 EKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           +K   VG + + + V++  K   +G +I VRI +    ++ G+ +
Sbjct: 445 DKQHYVGHNKFYEQVLIPLKQGYMGKMIDVRIIEATKFSMKGDPI 489


>gi|163734118|ref|ZP_02141559.1| RNA modification enzyme, MiaB-family, putative [Roseobacter
           litoralis Och 149]
 gi|161392654|gb|EDQ16982.1| RNA modification enzyme, MiaB-family, putative [Roseobacter
           litoralis Och 149]
          Length = 459

 Score =  154 bits (390), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 126/454 (27%), Positives = 209/454 (46%), Gaps = 46/454 (10%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC   + DS R+     ++GY      D AD +++NTC   + A  +  S +G   N 
Sbjct: 33  SLGCPKALVDSERILTRLRAEGYGISPDYDGADAVIVNTCGFLDSAKAESLSAIGEALN- 91

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
           +N R        V+V GC+  AE E I    P V  V GPQ Y             ++V+
Sbjct: 92  ENGR--------VIVTGCLG-AEPEYITGAHPKVLAVTGPQQY-------------EQVL 129

Query: 151 DTDYSV----EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           D  ++      D F  L          R  + +L I EGC+  C FC++P  RG   SR 
Sbjct: 130 DAVHAAVPPSPDPFVDLLPASAVSLTPRHFS-YLKISEGCNHKCKFCIIPDMRGRLASRP 188

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-------GEKCTFSDLLYSLSEIKG 259
              V+ EA KL+++GV E+ ++ Q+ +A+   G+D       G +   +DL   L  +  
Sbjct: 189 AHAVMREAEKLVESGVKELLVISQDTSAY---GVDIKHAEERGHRAHITDLARDLGSLGA 245

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
            VRL Y   +P       + A G   +++PYL +P Q     +L+ M R   A +    I
Sbjct: 246 WVRLHYVYPYPHVRQLIPLMAQG---LVLPYLDIPFQHAHPDVLRRMARPAAAAKTLDEI 302

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
              RS+ PD+ + S FIVG+PGET+++F+  +D +D+    +   F+Y    G   + + 
Sbjct: 303 AAWRSICPDLTLRSTFIVGYPGETEEEFQTLLDWLDEAQLDRVGCFQYENVAGARSNALP 362

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG--KLVGRSPWLQS 437
           + V E+VK +R      K ++   +   A V Q +EV++++   +    +    +P +  
Sbjct: 363 DHVPEDVKQDRWNRFMAKSQDISEAKLAAKVAQRLEVIVDEVDTDAATCRTKADAPEIDG 422

Query: 438 VVLNSKNHN---IGDIIKVRITDVKISTLYGELV 468
            +     H+    GDI+ V + +     L+G +V
Sbjct: 423 NLFIDDGHDGLKPGDIVTVEVDEAGEYDLWGRIV 456


>gi|113867458|ref|YP_725947.1| hypothetical protein H16_A1444 [Ralstonia eutropha H16]
 gi|123033079|sp|Q0KBP2|RIMO_RALEH RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|113526234|emb|CAJ92579.1| conserved hypothetical protein [Ralstonia eutropha H16]
          Length = 443

 Score =  154 bits (390), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 129/470 (27%), Positives = 218/470 (46%), Gaps = 68/470 (14%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC   + DS ++     ++GY    + D ADL+V+NTC   ++A ++    +G     
Sbjct: 5   SLGCPKALVDSEQIITQLRAEGYAISGTYDGADLVVVNTCGFIDEAVQESLDAIGEA--- 61

Query: 91  KNSRIKEGGDLLVVVAGCVAQ---AEGEEILRR-SPIVNVVVGPQTYYRLPELLERARFG 146
               + E G   V+V GC+     A G +I+    P V  V GP     L E+++     
Sbjct: 62  ----LTENGK--VIVTGCLGAKKDAAGHDIVSSVHPKVLAVTGPHA---LGEVMQ----- 107

Query: 147 KRVVDTDYS-VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
              V T      D F  L +   G        A+L I EGC+  C+FC++P  RG  +SR
Sbjct: 108 --AVHTHLPKPHDPFTDL-VPAAGIKLTPKHYAYLKISEGCNHRCSFCIIPSMRGDLVSR 164

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYSL 254
            +++V+ EA  L   GV E+ ++ Q+ +A           W G+ L   K   ++L+ +L
Sbjct: 165 PVAEVMLEAENLFKAGVKELLVISQDTSAYGVDVKYRTGFWNGRPL---KTRMTELVAAL 221

Query: 255 SEIKG----LVRLRYTTSHPR--DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
            E+       VRL Y   +P   ++   + + H     ++PYL +P+Q     +LK M R
Sbjct: 222 GELAAQYGAWVRLHYVYPYPHVDEIIPLMSQGH-----VLPYLDVPLQHAHPDVLKRMKR 276

Query: 309 RHTAYEYRQIIDRIRSVR---PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
              A    + +DRIR+ R   P++ I S FI GFPGET+ +F+  +D + +    +   F
Sbjct: 277 PANA---EKTMDRIRAWREICPELTIRSTFIAGFPGETEAEFQTLLDFIAEAELDRVGCF 333

Query: 366 KYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK 425
            YSP  G   +++   + + V+ ER     +   E         VGQ + VL+++  ++ 
Sbjct: 334 AYSPVEGATANDLPGALPDEVREERRARFMEVAEEVSARRLQRKVGQTLRVLVDEVNQDG 393

Query: 426 GKLVGRS----PWLQSVVL------NSKNHNIGDIIKVRITDVKISTLYG 465
           G  +GRS    P +  +V       +++ +  G+ + V+IT      L+G
Sbjct: 394 G--IGRSSADAPEIDGLVYIAPPERHAQRYRAGEFVDVKITGADGHDLWG 441


>gi|212691074|ref|ZP_03299202.1| hypothetical protein BACDOR_00564 [Bacteroides dorei DSM 17855]
 gi|237712425|ref|ZP_04542906.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|237726616|ref|ZP_04557097.1| conserved hypothetical protein [Bacteroides sp. D4]
 gi|265752128|ref|ZP_06087921.1| MiaB-like tRNA modifying enzyme [Bacteroides sp. 3_1_33FAA]
 gi|212666306|gb|EEB26878.1| hypothetical protein BACDOR_00564 [Bacteroides dorei DSM 17855]
 gi|229435142|gb|EEO45219.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4]
 gi|229453746|gb|EEO59467.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|263236920|gb|EEZ22390.1| MiaB-like tRNA modifying enzyme [Bacteroides sp. 3_1_33FAA]
          Length = 438

 Score =  154 bits (390), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 113/396 (28%), Positives = 195/396 (49%), Gaps = 28/396 (7%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N  ++  +       G       + AD+ V+NTC + E A +K    + R+   
Sbjct: 16  TLGCKLNFSETSTIGKTLKEAGIRTARKGEKADICVINTCSVTEVADKKCRQAIHRL--- 72

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL---ERARFGK 147
               +K+     VVV GC AQ + +++      V+VV+G +    L   L   E+   G+
Sbjct: 73  ----VKQHPGAYVVVTGCYAQLKPDQVANIEG-VDVVLGAEQKGELMNYLGNLEKHPQGE 127

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
            +      +       S  D    R R    FL +Q+GCD FC++C +P+ RG   +  +
Sbjct: 128 AITTAAKDIRSFSPSCSRGD----RTR---YFLKVQDGCDYFCSYCTIPFARGRSRNGRI 180

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
            ++V++AR+    G  EI + G N+  + GK   GE  +F DL+ +L ++ G+ R R ++
Sbjct: 181 EEIVEQARQAAAEGGKEIVITGVNIGDF-GK-TTGE--SFFDLVKALDQVAGIERYRISS 236

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
             P  ++D +I+        MP+ H+P+QSGSD +LK M RR+    +   I +IR + P
Sbjct: 237 IEPNLLTDEIIEYVSRSRAFMPHFHIPLQSGSDDVLKLMRRRYDTALFASKIRKIREIMP 296

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG---SNMLEQVDE 384
           +  I  D IVG  GET++ F      ++ +   Q   F YS R GT       ++   ++
Sbjct: 297 NAFIGVDVIVGTRGETEEYFEDAYHFIEGLDVTQLHVFTYSERPGTQALKIEYVVSPEEK 356

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
           + +++RLL L     E+  +F  + +G+   VL+EK
Sbjct: 357 HRRSQRLLVLSD---EKTKAFYTSHIGKEAWVLMEK 389


>gi|297156762|gb|ADI06474.1| hypothetical protein SBI_03353 [Streptomyces bingchenggensis BCW-1]
          Length = 521

 Score =  154 bits (390), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 128/460 (27%), Positives = 200/460 (43%), Gaps = 69/460 (15%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC  N  DS  +     + G+E V    DAD+ V+NTC   E A +     L    +L
Sbjct: 11  TLGCARNEVDSEELAGRLAADGWELVEEAADADVAVVNTCGFVEAAKKDSVDALLEANDL 70

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
           K+     G    VV  GC+A+  G+E+    P  + V+G   Y  + + L+    G   +
Sbjct: 71  KD----HGRTQAVVAVGCMAERYGKELAEALPEADGVLGFDDYAHISDRLQTILSGG--I 124

Query: 151 DTDYSVEDKFERLSI-------------------------------VDGGYNRKRGVTAF 179
              ++  D+ + L I                               +  G     G  A 
Sbjct: 125 HASHTPRDRRKLLPISPAERQGAAEVALPGHAQAEAAPEDLPAPEDLPAGVAPASGPRAP 184

Query: 180 L------------TIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITL 227
           L             +  GCD+ C+FC +P  RG  ISR  S V+ E R L + GV EI L
Sbjct: 185 LRRRLGSSPVASVKLASGCDRRCSFCAIPSFRGSFISRRPSDVLGETRWLAEQGVKEIML 244

Query: 228 LGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL 287
           + +N N   GK L G+      LL  L+ + G+ R+R +   P +M   LI      + +
Sbjct: 245 VSEN-NTSYGKDL-GDIRLLETLLPELAAVDGIERIRVSYLQPAEMRPGLIDVLTSTEKV 302

Query: 288 MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDF 347
            PY  L  Q  +  +L++M R      + +++DRIR+  P   + S+FIVGFPGET+DD 
Sbjct: 303 APYFDLSFQHSAPSVLRAMRRFGDTDRFLELLDRIRAKAPQAGVRSNFIVGFPGETEDDL 362

Query: 348 RATMDLVDKIGYAQAFS---FKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVS 404
               +L   +G A+  +   F YS   GT  +   ++VD +  AERL  + +   E    
Sbjct: 363 ---AELERFLGAARLDAIGVFGYSDEEGTEAATYEDKVDPDEVAERLAHISRLAEELTAQ 419

Query: 405 FNDACVGQIIEVLIEKHG------------KEKGKLVGRS 432
             +  +G ++EV++E+ G            +  G LVGR+
Sbjct: 420 RAEERLGDVVEVMVEESGDAHVAEDTDGADEGAGSLVGRA 459


>gi|254561877|ref|YP_003068972.1| MiaB-like tRNA modifying enzyme, 2-methylthioadenine synthetase
           [Methylobacterium extorquens DM4]
 gi|254269155|emb|CAX25121.1| MiaB-like tRNA modifying enzyme, putative 2-methylthioadenine
           synthetase [Methylobacterium extorquens DM4]
          Length = 410

 Score =  154 bits (389), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 110/355 (30%), Positives = 174/355 (49%), Gaps = 38/355 (10%)

Query: 31  SYGCQMNVYDS--LRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           ++GC++N  +S  LR      ++G          DL+V+NTC +  +A  +    + R+ 
Sbjct: 7   TFGCRLNTVESEVLRGHAEPGAEGR---------DLVVVNTCAVTAEAGRQARKAIRRL- 56

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRS----PIVNVVVGPQTYYRLPELLERAR 144
               SR + G +  +VV GC     G E+ R S    P V  +VG     R PE  +   
Sbjct: 57  ----SRERPGAE--IVVTGC-----GAEVERASYAAMPEVTRLVGNAAKLR-PESWQS-- 102

Query: 145 FGKRVVDTDYSVEDKFERLSIVD-GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            G      D       E   I    G+ R     AF+ +Q GCD  CTFCV+P+ RG   
Sbjct: 103 -GTAPAPEDIMAVRTAEPTHITTMSGHTR-----AFVPVQNGCDHRCTFCVIPFGRGNSR 156

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           S  +++ V +  +++++G  E+ L G ++ A+ G+ LD +      +   L+E+  L RL
Sbjct: 157 SVPVAEAVAQVCRIVEHGGREVVLTGVDLTAY-GRDLDSDLSLGRLVRTILAEVPDLARL 215

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R ++    +    LI A  +   LMP++HL +Q+G D ILK M RRH+  +  ++ + +R
Sbjct: 216 RLSSIDSVEADAELIAAFAEEPRLMPHVHLSLQAGDDLILKRMKRRHSRADAIRLCETLR 275

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
            +RP +   +D I GFP ET   F  ++DLV + G      F YSPR  TP + M
Sbjct: 276 ELRPGLVFGADLIAGFPTETAAQFVRSLDLVAECGLTHLHVFPYSPRPNTPAARM 330


>gi|320536506|ref|ZP_08036537.1| MiaB-like tRNA modifying enzyme YliG [Treponema phagedenis F0421]
 gi|320146646|gb|EFW38231.1| MiaB-like tRNA modifying enzyme YliG [Treponema phagedenis F0421]
          Length = 485

 Score =  154 bits (389), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 114/408 (27%), Positives = 184/408 (45%), Gaps = 55/408 (13%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA----EKV 80
           ++FF+  +GC  N  D   +  +   +G+ R  S + AD+I++N+C   E A     E V
Sbjct: 3   KQFFLDQHGCAKNQVDGELLIGILQQEGWVRAKSAETADIIIVNSCGFIEAAKLESIEAV 62

Query: 81  YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140
            S   R  N K           +++AGC+A+   EE  +  P  +   G     +LP+++
Sbjct: 63  ISARSRYPNAK-----------ILLAGCLAERYAEEFQQELPEADAFFGNGDLSQLPKIV 111

Query: 141 ERARFGKRVVDT--DYSV----EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCV 194
            +      + +T  DY      E K     I     N  R V  F+ I EGC+  C+FC 
Sbjct: 112 HQM-----ITNTKKDYRPALVPEQKGISCGIRPEILNFPRSV--FIKITEGCNHRCSFCA 164

Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG----------------- 237
           +P  RG   SR +   V E ++ I +G  E  L+GQ++ A++G                 
Sbjct: 165 IPLIRGNLRSRPIEDCVQEIQQFIKSGCYEFNLIGQDLAAFQGSKKTAYNFGTKPQGSIK 224

Query: 238 ---KGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP 294
              +    ++   ++LL ++S ++G  R+R    HP +    ++         +PY  LP
Sbjct: 225 SIEQTFPKKQSGLAELLQAISALEGDFRVRLLYIHPDNFPLDILPIMTQDSRFLPYFDLP 284

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIR-------SVRPDIAISSDFIVGFPGETDDDF 347
            QSGS  IL  MNRR +A +Y ++ D IR       S        + F+ GFPGETD DF
Sbjct: 285 FQSGSANILHLMNRRGSAEKYLELADTIRNAFRKAKSPYKTTVFRTTFLTGFPGETDFDF 344

Query: 348 RATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQ 395
             T D +  +    + +F +S   GT   ++  QV + +  +RL  LQ
Sbjct: 345 EQTEDFLTNLKSLWSGAFVFSKEEGTKAEHLPAQVPKKLAEKRLRILQ 392


>gi|282881461|ref|ZP_06290135.1| MiaB-like protein [Prevotella timonensis CRIS 5C-B1]
 gi|281304687|gb|EFA96773.1| MiaB-like protein [Prevotella timonensis CRIS 5C-B1]
          Length = 455

 Score =  154 bits (389), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 113/402 (28%), Positives = 188/402 (46%), Gaps = 31/402 (7%)

Query: 33  GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92
           GC++N  ++    ++    G   V   + AD+ ++NTC + E A  K    + R+     
Sbjct: 20  GCKLNFSETSTFAELLQGMGVRTVQCGEPADICLINTCSVTEVADHKCRQAIRRM----- 74

Query: 93  SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR---- 148
             ++E     V+V GC AQ E + + +    V++V+G      L + L  A   K     
Sbjct: 75  --VRENPGAFVIVTGCYAQLESQTVSQIEG-VDLVLGSNEKANLVQYLNDAWLQKSELAA 131

Query: 149 -------VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
                   + T  SV+ K   +       +R      FL +Q+GC+ FCT+C +P+ RG 
Sbjct: 132 TSPNHRPSLHTYQSVKTK--DIKTFQPSCSRGNRTRYFLKVQDGCNYFCTYCTIPFARGF 189

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
             + S+  +V +A +    G  EI L G N+    G+  +    TF DL+ +L +++G+ 
Sbjct: 190 SRNPSIDFLVKQAEQAAAEGGKEIVLTGVNI----GEFGESTNETFLDLVKALDQVQGIK 245

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R R ++  P  + D LI         MP+ H+P+QSGSD +L+ M+R +    +   I  
Sbjct: 246 RFRISSLEPDLIDDELIDYCAHSRAFMPHFHIPLQSGSDEVLQLMHRHYDTALFAHKILY 305

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM--- 378
           I+   PD  I  D +VG  GE  + F A    + ++   Q   F YS R GT   ++   
Sbjct: 306 IKEKIPDAFIGVDVMVGSRGEKPEYFEACYQFLKQLDVTQLHVFPYSERPGTRALSIPYV 365

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
           +   ++ V+++RLL L     E+  +F    +GQ  EVL EK
Sbjct: 366 VSDKEKKVRSKRLLQLSD---EKTKAFYQKYIGQEAEVLFEK 404


>gi|298242342|ref|ZP_06966149.1| MiaB-like tRNA modifying enzyme [Ktedonobacter racemifer DSM 44963]
 gi|297555396|gb|EFH89260.1| MiaB-like tRNA modifying enzyme [Ktedonobacter racemifer DSM 44963]
          Length = 495

 Score =  154 bits (389), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 89/249 (35%), Positives = 135/249 (54%), Gaps = 5/249 (2%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
           + +Q+GC+  CT+C+VPY RG   SR++  VV+  ++    G  EI L G ++  +   G
Sbjct: 206 MKVQDGCNNRCTYCIVPYVRGNSRSRTIDSVVEHVQRKARAGYQEIVLTGIHLGDYHPAG 265

Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
              E+    DL+ +L     + R+R ++  P D     +    D  +   + HLP+QSGS
Sbjct: 266 --DEQKDLGDLIATLLRETDMPRIRVSSLEPEDFRLEWLDLWQDPRMCR-HFHLPMQSGS 322

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
           D IL+ M RR+ +  YR+II   +   P +AIS+D I GFPGETD+DF  T  L  ++ +
Sbjct: 323 DNILRRMARRYNSARYREIILTAKQRIPGVAISTDIITGFPGETDEDFELTYQLAQELEF 382

Query: 360 AQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419
           A+   F++S R GT  + M  Q+ + VK ER   L     E    F    +GQ ++VLIE
Sbjct: 383 AKTHVFRFSARQGTAAARMRGQIKDVVKKERSARLLTLNEEHSRQFRQQFLGQTVDVLIE 442

Query: 420 --KHGKEKG 426
             KHG  +G
Sbjct: 443 QSKHGYWEG 451


>gi|152149498|pdb|2QGQ|A Chain A, Crystal Structure Of Tm_1862 From Thermotoga Maritima.
           Northeast Structural Genomics Consortium Target Vr77
 gi|152149499|pdb|2QGQ|B Chain B, Crystal Structure Of Tm_1862 From Thermotoga Maritima.
           Northeast Structural Genomics Consortium Target Vr77
 gi|152149500|pdb|2QGQ|C Chain C, Crystal Structure Of Tm_1862 From Thermotoga Maritima.
           Northeast Structural Genomics Consortium Target Vr77
 gi|152149501|pdb|2QGQ|D Chain D, Crystal Structure Of Tm_1862 From Thermotoga Maritima.
           Northeast Structural Genomics Consortium Target Vr77
 gi|152149502|pdb|2QGQ|E Chain E, Crystal Structure Of Tm_1862 From Thermotoga Maritima.
           Northeast Structural Genomics Consortium Target Vr77
 gi|152149503|pdb|2QGQ|F Chain F, Crystal Structure Of Tm_1862 From Thermotoga Maritima.
           Northeast Structural Genomics Consortium Target Vr77
 gi|152149504|pdb|2QGQ|G Chain G, Crystal Structure Of Tm_1862 From Thermotoga Maritima.
           Northeast Structural Genomics Consortium Target Vr77
 gi|152149505|pdb|2QGQ|H Chain H, Crystal Structure Of Tm_1862 From Thermotoga Maritima.
           Northeast Structural Genomics Consortium Target Vr77
          Length = 304

 Score =  154 bits (389), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 99/300 (33%), Positives = 159/300 (53%), Gaps = 16/300 (5%)

Query: 178 AFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG 237
           A++ I +GCD+ CTFC +P  +G   SRS+  +  E   L+  G  EI L+ Q+  ++  
Sbjct: 6   AYVKISDGCDRGCTFCSIPSFKGSLRSRSIEDITREVEDLLKEGKKEIILVAQDTTSY-- 63

Query: 238 KGLD-GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQ 296
            G+D   K    DLL  L+ + G   +R    HP  +++ +I A  +LD ++ Y  +PVQ
Sbjct: 64  -GIDLYRKQALPDLLRRLNSLNGEFWIRVXYLHPDHLTEEIISAXLELDKVVKYFDVPVQ 122

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
            GSD+ILK   R  ++ E ++ +  IR   PD  + +  IVGFPGET++DF      V++
Sbjct: 123 HGSDKILKLXGRTKSSEELKKXLSSIRERFPDAVLRTSIIVGFPGETEEDFEELKQFVEE 182

Query: 357 IGYAQAFSFKYSPRLGTPGSNMLEQVDENV---KAERLLCLQKKLREQQVSFNDACVGQI 413
           I + +  +F YS   GT   N+ E+VD      + E LL LQ ++   ++   D  VG+ 
Sbjct: 183 IQFDKLGAFVYSDEEGTVAFNLKEKVDPEXAKRRQEELLLLQAEISNSRL---DRFVGKK 239

Query: 414 IEVLIEKHGKEKGKLVGRS----PWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
           ++ L+E  GKE   LVGR+    P +  VV       IGD ++V I +      +G +++
Sbjct: 240 LKFLVE--GKEGKFLVGRTWTEAPEVDGVVFVRGKGKIGDFLEVVIKEHDEYDXWGSVIL 297


>gi|325103015|ref|YP_004272669.1| SSU ribosomal protein S12P methylthiotransferase [Pedobacter
           saltans DSM 12145]
 gi|324971863|gb|ADY50847.1| SSU ribosomal protein S12P methylthiotransferase [Pedobacter
           saltans DSM 12145]
          Length = 444

 Score =  154 bits (389), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 127/458 (27%), Positives = 220/458 (48%), Gaps = 39/458 (8%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERV---NSMDDADLIVLNTCHIREKAAEK 79
           V  R  V + GC  N YDS  +         + V   N++ + D++V+NTC   + A ++
Sbjct: 13  VQPRVNVVTLGCSKNTYDSEILMGQLKGNHIDVVHEANNVRENDIVVINTCGFIDNAKQE 72

Query: 80  VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL 139
               + +  +LK+    +G    V+V GC++Q    E+      V+   G      L  L
Sbjct: 73  SIDTILQYSDLKD----QGKVGKVIVTGCLSQRYTPELSAEIQNVDAWFGTND---LQNL 125

Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           L         V  +Y  E   ERL      +       A+  I EGC++ C+FC +P  R
Sbjct: 126 L-------HAVGANYKYELLGERLLTTPSHF-------AYFKIAEGCNRPCSFCAIPLMR 171

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G  +S  + ++V  A+ L  NG  E+ L+ Q++  + G  L  E+   +DLL +LS++ G
Sbjct: 172 GKHVSFPIEELVKNAKNLAKNGTKELVLIAQDL-TYYGLDLYNER-KLADLLRNLSDVDG 229

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           +  +R   ++P      ++    + D +  YL +P+Q  SD +LKSM R  T  +   ++
Sbjct: 230 IEWIRLQYAYPSGFPMEILDVMNERDNICKYLDMPLQHISDNMLKSMRRGTTKQKTIDLV 289

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
           ++IR   P+IA+ +  I G+PGET+ DF    + V++  + +   F YS    T   ++ 
Sbjct: 290 NQIRDKVPNIAMRTTLICGYPGETERDFEEMKEWVEETRFDRLGCFTYSHEEKTQAFDLE 349

Query: 380 EQVDENVKAERLLCLQKKLREQQVSF--NDACVGQIIEVLIEKHGKEKGKLVGR----SP 433
           + + + VK +R+  +     +Q +SF  N   VG   +VLI+K  KE    +GR    SP
Sbjct: 350 DNIPQEVKEQRVEEIMDI--QQGISFDLNQEKVGNTYKVLIDK--KEGDYFIGRTEFDSP 405

Query: 434 WLQS-VVLNSKNH--NIGDIIKVRITDVKISTLYGELV 468
            + + V+LN+      +G  + ++I   +   LYG +V
Sbjct: 406 EVDNEVLLNASTDYATVGSFVNIKIDRAEDFDLYGRIV 443


>gi|282854046|ref|ZP_06263383.1| MiaB-like protein [Propionibacterium acnes J139]
 gi|282583499|gb|EFB88879.1| MiaB-like protein [Propionibacterium acnes J139]
          Length = 481

 Score =  154 bits (389), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 132/465 (28%), Positives = 207/465 (44%), Gaps = 56/465 (12%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N  DS  +     + G+  V+   +A+ +V+NTC   E+A +     L    +L
Sbjct: 14  SMGCARNDVDSEELAARMEAGGFRLVDDPAEAETVVVNTCGFIEQAKKDSVDTLLAAADL 73

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYY----RLPELLERARF- 145
           + +    G    VV  GC+A+  G E+    P  + V+G   Y     RL  +L+     
Sbjct: 74  RGN----GTTTSVVAVGCMAERYGRELAESLPEADAVLGFDDYGDIAGRLRTILDGGSLE 129

Query: 146 -----GKRVVDTDYSVEDKFERLSIVDGGY------------------NRKR---GVTAF 179
                 +R +     V+    R  +   G+                   R+R   G +A 
Sbjct: 130 THVPRDRRTLLPISPVDRPIARAEVSVPGHGTAPDLPASVAPESGPRPTRRRLGTGPSAP 189

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
           L +  GCD+ C FC +P  RG  +SR ++++V+EAR L+D+GV E+ L+ +N +++ GK 
Sbjct: 190 LKMASGCDRRCAFCAIPRFRGSYLSRPIAEIVEEARWLVDHGVKEVFLVSENSSSY-GKD 248

Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
           L   +     LL +L ++ GL  +R +   P ++   LI      D ++PY  L  Q  S
Sbjct: 249 LRDLRL-LEKLLVTLDQVDGLEWIRVSYLQPAELRPGLIDTILAADKVVPYFDLSFQHAS 307

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
             +L+SM R   A  +  IID IRS  P+    S+FI GFPGETD D     D + +   
Sbjct: 308 GPVLRSMRRFGDAESFLNIIDSIRSRCPEAGFRSNFITGFPGETDADVAVLADFLQRARL 367

Query: 360 AQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419
             A  F YS   GT  + +   VDE+V   R        RE      D  V Q  E  I 
Sbjct: 368 DVAGIFAYSDEEGTEAAGLDGHVDEDVITAR--------REDLADLTDELVSQRAEDRIG 419

Query: 420 KHGKE-----KGKLVGRS----PWLQSVV--LNSKNHNIGDIIKV 453
             G+         ++GR+    P +   V  +++   ++GDI+ V
Sbjct: 420 TRGRVMVEEIDEAVIGRAEHQGPEVDGCVTLVDAAAVSVGDIVDV 464


>gi|119719528|ref|YP_920023.1| RNA modification protein [Thermofilum pendens Hrk 5]
 gi|119524648|gb|ABL78020.1| RNA modification enzyme, MiaB family [Thermofilum pendens Hrk 5]
          Length = 428

 Score =  154 bits (389), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 127/455 (27%), Positives = 221/455 (48%), Gaps = 42/455 (9%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R +++++GC +N  +S  M  +   +G++ V S+++AD+++LNTC +R     K++  L 
Sbjct: 3   RVYIETFGCWLNKGESNIMATLLKRRGHKVVESIENADVVILNTCAVRGDTETKIFRRLR 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE---- 141
            +  L+  R        +VV+GC+     + IL  +P  ++V  P    ++PE++E    
Sbjct: 63  ELEELRQKR-----GFRLVVSGCLVNVRPKSILDVAPSASLV-EPDAIEKIPEVVESEDK 116

Query: 142 ----RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197
               R     R V  DYS                   G    + I+ GC   C FC+   
Sbjct: 117 LLIVRQYKASRNVLPDYS------------------GGAVHVVPIESGCLGSCAFCIEWV 158

Query: 198 TRGIEI-SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256
           TRG  + S  +  +++  R  +  G  EI L GQ+V A+   G D     +  +   L E
Sbjct: 159 TRGTGVKSYPIDVIIENVRAAVSKGAREIFLTGQDVAAY---GYDLGTNLYELVKRILEE 215

Query: 257 IKGLVRLRYTTSHPRDMS---DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
           + G  R+R     P  +      L++   D + L  Y H+P QSG D++L+ M R++T  
Sbjct: 216 VDGEYRVRLGMMEPMLLGRFLKNLLELFRD-ERLYRYFHIPAQSGDDKVLRLMRRKYTVE 274

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
           EY+ I++ IR      +I +D IVGFPGE + +F+ T+  + ++ + +    +Y+ R  T
Sbjct: 275 EYKGIVNTIRGSGWKFSIVTDIIVGFPGEGEAEFQNTLKFLREVMFDKVHVARYTFRPFT 334

Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSP 433
            G  M   V E VK +R     +   E     N + VG+  EV++E     +G LVGR+ 
Sbjct: 335 EGYVM-SGVPEPVKKQRSRLASRVALEVAYEINRSYVGEEREVVVEGTSI-RGDLVGRTI 392

Query: 434 WLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
             + VV+  +   +G+I++V+I D    +L G+++
Sbjct: 393 EYKPVVIKDQEARVGEIVRVKIVDATPVSLIGKVL 427


>gi|115618009|ref|XP_792404.2| PREDICTED: similar to CDK5 regulatory subunit associated protein
           1-like 1 [Strongylocentrotus purpuratus]
          Length = 556

 Score =  154 bits (388), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 129/470 (27%), Positives = 211/470 (44%), Gaps = 59/470 (12%)

Query: 22  IVP--QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEK 79
           I+P  Q+ FVK++GC  N  D   M     S GY   +    AD+ +LN+C ++  A + 
Sbjct: 56  IIPGTQKVFVKTWGCSHNNSDGEYMAGQLASYGYSITDDSSGADVWLLNSCTVKNPAED- 114

Query: 80  VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL 139
                   RN      ++G  L  V+AGCV Q + +    +      V+G Q   R+ E+
Sbjct: 115 ------HFRNEIQKAQQQGKAL--VLAGCVPQGQPKAKYMQG---VSVIGVQQIDRVVEV 163

Query: 140 LERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
           +E    G  V +        K    + +D    R+  +   L I  GC   CT+C   + 
Sbjct: 164 VEETVKGNTVRLFGQKKQGGKKIGGASLDLPKIRRNPLVEILAINTGCLNQCTYCKTKHA 223

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD----------------G 242
           RG   S    ++V  A++  D GVCEI L  ++  A+   G+D                 
Sbjct: 224 RGELGSYPPEELVARAKQSFDEGVCEIWLTSEDTGAY---GIDIGVTIVELLDQLVEVIP 280

Query: 243 EKCTF----SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
           E C      ++  Y L  ++G+ R+     HPR  S               +LH+P+QSG
Sbjct: 281 EGCMMRIGMTNPPYILDHLEGIARI---LRHPRVYS---------------FLHIPIQSG 322

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           SD +L  M R +   ++R+I++ +R   P + I++D I GFP E++ DF  T+ L+++  
Sbjct: 323 SDSVLMDMKREYCTADFRKIVEFLRKEVPRVTIATDIICGFPHESEKDFEETLSLIEEFK 382

Query: 359 YAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI 418
           +   F  +Y PR GTP +    QV    K  R   L    +  Q +++D  VG+  +VL+
Sbjct: 383 FPSVFINQYFPRPGTPAAKW-PQVPAQEKKRRTKALTVLFKSYQ-TYDDK-VGERFDVLV 439

Query: 419 EKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            +   +K  LV  + +   V++      +G I+KV I  V    L G ++
Sbjct: 440 TEVSHDKQYLVAHNKFYDQVLVPHNKEYLGRILKVEIESVGKHFLMGRVL 489


>gi|42523418|ref|NP_968798.1| Fe-S oxidoreductase [Bdellovibrio bacteriovorus HD100]
 gi|39575624|emb|CAE79791.1| Fe-S oxidoreductase [Bdellovibrio bacteriovorus HD100]
          Length = 443

 Score =  154 bits (388), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 112/437 (25%), Positives = 209/437 (47%), Gaps = 21/437 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNS-MDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ V ++GC++N YD+  ++    + G+  V S   DA + VLNTC +  +A ++   ++
Sbjct: 2   KYQVHTFGCKVNTYDAGLIQKNLNASGFMPVVSGQKDARIHVLNTCAVTAEATKEAVRYI 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE--- 141
            R++      +K+     +VV GC AQ +        P  +++V       LP+LL    
Sbjct: 62  RRLK------VKDPF-CTIVVTGCAAQVDTGS-FSSLPGADLIVANSHKSSLPDLLNKHF 113

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           R    ++V  ++      F++  +  GG   K+    FL IQ+GC+ FCT+C++PY RG 
Sbjct: 114 RGELTEKVFKSNI-----FKKEDLEAGGGIEKQHTRTFLKIQDGCNSFCTYCIIPYARGK 168

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
             S  ++ +V+    L   G  E+ L G ++  +  + +   K    DLL +L     + 
Sbjct: 169 SRSIPVADLVNRINDLYAEGSREVVLTGVHIGDYEDQ-IGDRKYVMEDLLENLLAKTKMP 227

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R R ++  P ++S+ L+  + D   L P+ H+ +QS +  +L  M R++T  + ++ +  
Sbjct: 228 RFRLSSLEPVEVSERLLDLYQD-SRLCPHFHMSIQSANTDVLFHMKRKYTQEDVQKSLRA 286

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I    P   +  D I GFP ET++ F+ T + +  + + +   F YS R GT  + M   
Sbjct: 287 IADRVPGSFVGMDVITGFPTETEEQFQDTYNCLKDLPWTKLHVFPYSERQGTRAAAMDVS 346

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           V  +V+AER   L++    +        +G    VL+ K+  + G+ +    W   +   
Sbjct: 347 VYPHVRAERAARLRELSIARYTEQAQNQIGSTKRVLVLKNAAKGGQGLSHDYWPVDIAGA 406

Query: 442 SK--NHNIGDIIKVRIT 456
               +H  G  + V++T
Sbjct: 407 ESFLDHWAGQEVDVKVT 423


>gi|314966789|gb|EFT10888.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes
           HL082PA2]
 gi|314981126|gb|EFT25220.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes
           HL110PA3]
 gi|315091951|gb|EFT63927.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes
           HL110PA4]
 gi|315093292|gb|EFT65268.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes
           HL060PA1]
 gi|315103451|gb|EFT75427.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes
           HL050PA2]
 gi|327327616|gb|EGE69392.1| Fe-S oxidoreductase [Propionibacterium acnes HL103PA1]
          Length = 474

 Score =  154 bits (388), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 132/465 (28%), Positives = 207/465 (44%), Gaps = 56/465 (12%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N  DS  +     + G+  V+   +A+ +V+NTC   E+A +     L    +L
Sbjct: 7   SMGCARNDVDSEELAARMEAGGFRLVDDPAEAETVVVNTCGFIEQAKKDSVDTLLAAADL 66

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYY----RLPELLERARF- 145
           + +    G    VV  GC+A+  G E+    P  + V+G   Y     RL  +L+     
Sbjct: 67  RGN----GTTTSVVAVGCMAERYGRELAESLPEADAVLGFDDYGDIAGRLRTILDGGSLE 122

Query: 146 -----GKRVVDTDYSVEDKFERLSIVDGGY------------------NRKR---GVTAF 179
                 +R +     V+    R  +   G+                   R+R   G +A 
Sbjct: 123 THVPRDRRTLLPISPVDRPIARAEVSVPGHGTAPDLPASVAPESGPRPTRRRLGTGPSAP 182

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
           L +  GCD+ C FC +P  RG  +SR ++++V+EAR L+D+GV E+ L+ +N +++ GK 
Sbjct: 183 LKMASGCDRRCAFCAIPRFRGSYLSRPIAEIVEEARWLVDHGVKEVFLVSENSSSY-GKD 241

Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
           L   +     LL +L ++ GL  +R +   P ++   LI      D ++PY  L  Q  S
Sbjct: 242 LRDLRL-LEKLLVTLDQVDGLEWIRVSYLQPAELRPGLIDTILAADKVVPYFDLSFQHAS 300

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
             +L+SM R   A  +  IID IRS  P+    S+FI GFPGETD D     D + +   
Sbjct: 301 GPVLRSMRRFGDAESFLNIIDSIRSRCPEAGFRSNFITGFPGETDADVAVLADFLQRARL 360

Query: 360 AQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419
             A  F YS   GT  + +   VDE+V   R        RE      D  V Q  E  I 
Sbjct: 361 DVAGIFAYSDEEGTEAAGLDGHVDEDVITAR--------REDLADLTDELVSQRAEDRIG 412

Query: 420 KHGKE-----KGKLVGRS----PWLQSVV--LNSKNHNIGDIIKV 453
             G+         ++GR+    P +   V  +++   ++GDI+ V
Sbjct: 413 TRGRVMVEEIDEAVIGRAEHQGPEVDGCVTLVDAAAVSVGDIVDV 457


>gi|57242028|ref|ZP_00369968.1| MiaB-like tRNA modifying enzyme [Campylobacter upsaliensis RM3195]
 gi|57017220|gb|EAL54001.1| MiaB-like tRNA modifying enzyme [Campylobacter upsaliensis RM3195]
          Length = 413

 Score =  154 bits (388), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 112/399 (28%), Positives = 203/399 (50%), Gaps = 39/399 (9%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + F+K++GC+ N+YDS  ++   + + +E  N+  +AD++++N+C +   A   + ++  
Sbjct: 3   KIFLKTFGCRTNIYDSELIKG--YIKDFELTNNEKEADIVLINSCTVTNGADSGLKTY-- 58

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-ERAR 144
            I +LK + IK      V++ GC A ++G+E+L    I  V+ G     ++ E L E+ R
Sbjct: 59  -INSLKKNNIK------VILTGCAAVSKGKELLDNGAIFGVL-GASNKAKINEFLKEKKR 110

Query: 145 FGK----RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           F +      +D D           IV    N  +   AF+ IQEGCD  C++C++P  RG
Sbjct: 111 FYELGNLNFIDKD-----------IVKDYENHTK---AFVKIQEGCDFNCSYCIIPSVRG 156

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
              S   S ++++ + LI NG  EI L G N+ ++  K  DG   T   LL  + +I GL
Sbjct: 157 RSRSVKESDLLEQIKILIQNGYTEIVLTGTNIGSYGLK--DG--TTLGKLLQKMMQISGL 212

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R  +  P  + +  ++   D  +L  +LH+ +Q  S+ +L+ M RR    +  ++  
Sbjct: 213 KRIRLGSLEPAQIDESFMEIL-DEKLLERHLHIALQHTSETMLRIMRRRSHTKDDLRLFQ 271

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
            + S     A+ +DFIVG PGE+++ ++  +    +       +F +SPR  T  + +  
Sbjct: 272 TLAS--KGFALGTDFIVGHPGESEELWQEALRNFTEFKLTHLHAFIFSPRNNTHSATLKN 329

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419
            +  ++  ERL  L+  +++    F  A   + +EVLIE
Sbjct: 330 TIKGDLAKERLNTLKAIVQKNNFEFRKANKVK-LEVLIE 367


>gi|295103489|emb|CBL01033.1| MiaB-like tRNA modifying enzyme [Faecalibacterium prausnitzii
           SL3/3]
          Length = 431

 Score =  154 bits (388), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 115/431 (26%), Positives = 213/431 (49%), Gaps = 25/431 (5%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N+ ++  +E +F + G+      + AD+ ++N+C +     +K   +L R +  
Sbjct: 7   TLGCKVNLNETGALEQLFRANGFTIAQEGEAADVFIVNSCTVTNFGDQKSRKWLRRKK-- 64

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG-KRV 149
                +E    + V+ GC  QA  EE  +     ++V G   +  + E +++   G +R+
Sbjct: 65  -----RENPGAVTVLTGCYPQAFPEEAAQFME-ADLVCGNGDHKAILENVQKLLDGHERI 118

Query: 150 VD-TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           V    +   ++FE L +     + +    AF+ +++GC++ C +CV+P  RG   SR+  
Sbjct: 119 VAIAPHQRGEQFEELPVERFETHTR----AFIKVEDGCNRQCAYCVIPRARGPVRSRAEE 174

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
            ++ E  +L   G  E+ L   ++ ++   GLD       +L+   +++ G+ R+R  + 
Sbjct: 175 SILAELHQLAAAGYREVVLSAISLPSY---GLD-TGTNLVELVEKCAQVPGIERIRLGSL 230

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV--- 325
            P  ++   I     +D L P  HL +QSG    L+ M R +TA EY Q++++IR+    
Sbjct: 231 DPDMLTPEFISRLAAVDKLCPQFHLSLQSGCTATLRRMRRVYTAQEYAQVVEQIRAAYGS 290

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
           RP ++ ++D I GFPGET +DF  +   + KIG+ +   F YS R GTP  +  +Q+ E 
Sbjct: 291 RP-VSFTTDCICGFPGETAEDFEESCAFLKKIGFLKVHVFPYSRRSGTPAYDFPDQIHER 349

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL-VGRSPWLQSVVLNSKN 444
            K ER   +     + +     A  G   EVL+E      G L  G +     VV+++  
Sbjct: 350 EKQERSRRMNAAAEQVRCEALAAFEGTEDEVLLET--PLSGTLFTGYTRLYIPVVVSAPG 407

Query: 445 HNIGDIIKVRI 455
              G I++V++
Sbjct: 408 CESGQIVRVKL 418


>gi|262277882|ref|ZP_06055675.1| conserved hypothetical protein [alpha proteobacterium HIMB114]
 gi|262224985|gb|EEY75444.1| conserved hypothetical protein [alpha proteobacterium HIMB114]
          Length = 419

 Score =  154 bits (388), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 116/396 (29%), Positives = 196/396 (49%), Gaps = 30/396 (7%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           +YGC++N+Y+S  M+     +  E+ N     + I+ N+C +  +A +KV   +  IR  
Sbjct: 8   TYGCRLNIYESEVMQ-----KHLEKANL---KNYILFNSCSVTNEAKKKV---IDDIR-- 54

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE--RARFGKR 148
                K+  +  ++V GC +Q + +  L  S  V+ V+G +        L+    +   +
Sbjct: 55  --KFKKKYPNKKIIVTGCASQIDSKTFLSMSE-VDHVIGNKEKMEFETFLKISNEKIANK 111

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           + D    +E K      ++   N  R   AF+ IQ GCD  CTFC +PY RG   S  ++
Sbjct: 112 ISDI---MELKTIAPQFIESFENHSR---AFIQIQNGCDHRCTFCTIPYGRGNSRSLPIN 165

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS-LSEIKGLVRLRYTT 267
            ++++ + L + G  EI L G ++ ++ G  LD EK     L+ + L   K L RLR ++
Sbjct: 166 NILEQIKMLNEKGFNEIILTGVDLTSY-GPDLD-EKVNLGKLVEAILKNNKELKRLRLSS 223

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
               ++   L +       +MP+ HL +QSG + ILK M RRH         ++I+  RP
Sbjct: 224 LDSIEIDSLLFEILSSEKRVMPHFHLSMQSGDNMILKRMKRRHQREHAIDFCNKIKLARP 283

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
           ++   +D I GFP ET++ F  T+ ++D+        F +SP    P S M  QV +N+ 
Sbjct: 284 EVIFGADLIAGFPTETEEMFHNTLKIIDECDLTLLHIFPFSPMEKAPASKM-PQVPKNII 342

Query: 388 AERLLCLQKKLR-EQQVSFNDACVGQIIEVLIEKHG 422
            ER   L++K + + +  F D  VG+ + VL EK+ 
Sbjct: 343 KERAKILREKGQLKMKDKFKDT-VGKTLNVLTEKNS 377


>gi|227872341|ref|ZP_03990694.1| possible tRNA 2-methylthioadenine synthetase [Oribacterium sinus
           F0268]
 gi|227841805|gb|EEJ52082.1| possible tRNA 2-methylthioadenine synthetase [Oribacterium sinus
           F0268]
          Length = 230

 Score =  154 bits (388), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 82/214 (38%), Positives = 132/214 (61%), Gaps = 2/214 (0%)

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
           E+C+F +LL  ++++ GL RLR+ T +P+D SD L++   + + +  ++HLP+QSGS  I
Sbjct: 5   EECSFPELLAKIAKLPGLKRLRFMTPNPKDFSDELLQVMKENENICNHIHLPLQSGSTAI 64

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           LK MNR ++   Y  ++ +IR V PD+++++D IVGFPGET++DF+ TM++V    +  A
Sbjct: 65  LKRMNRHYSKESYMALVKKIREVLPDVSLTTDIIVGFPGETEEDFQDTMEVVAYSKFDSA 124

Query: 363 FSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422
           F+F+YS R GTP +   E V E+V  ER   L + +R          +G+++EVL+E+  
Sbjct: 125 FTFQYSKRTGTPAAKW-EAVPEDVVKERFQRLLEHIRLHSEEREGRDLGKVMEVLVEEKD 183

Query: 423 KE-KGKLVGRSPWLQSVVLNSKNHNIGDIIKVRI 455
           KE +  L GR      V        IG+I+ VR+
Sbjct: 184 KESENMLTGRLSNNVLVHFEGGERLIGEIVPVRL 217


>gi|321479315|gb|EFX90271.1| hypothetical protein DAPPUDRAFT_300126 [Daphnia pulex]
          Length = 560

 Score =  154 bits (388), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 130/466 (27%), Positives = 212/466 (45%), Gaps = 54/466 (11%)

Query: 22  IVP--QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEK 79
           I+P  Q+ +VK++GC  N  DS  M     + GY   +   +ADL +LN+C ++  A + 
Sbjct: 61  IIPGTQKIWVKTWGCAHNNSDSEYMAGQLAAYGYSLTDEKYEADLWLLNSCTVKTPAEDH 120

Query: 80  VYSFL--GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNV-----VVGPQT 132
             + +  GR R              VVVAGCV Q +        P  N      ++G Q 
Sbjct: 121 FKNEIDDGRARGTP-----------VVVAGCVPQGQ--------PKANYLQGLSIIGVQQ 161

Query: 133 YYRLPELLERARFGK--RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190
             R+ E++E    G   R++ T    E K    + +     RK  +   + I  GC   C
Sbjct: 162 IDRVVEVVEETLKGHSVRLLGTKKDAEKKKTGGASLLLPKIRKNPLIEIIPINTGCLNQC 221

Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDL 250
           T+C   + RG   S    ++V  A +    GVCEI L  ++  A+ G+ +     +  +L
Sbjct: 222 TYCKTKHARGELGSYPPEEIVARAIQSFQEGVCEIWLTSEDTGAY-GRDIGS---SLPEL 277

Query: 251 LYSLSEI--------KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
           L  L ++         G+    Y   H   +++ L         +  +LHLPVQSGSD +
Sbjct: 278 LRQLVQVIPDGCMLRLGMTNPPYILEHLEAIAEILNHPR-----VYAFLHLPVQSGSDCV 332

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           L  M R +   ++ ++++ +R   P I+I++D I GFP ET+ DF  TM+L  K  +   
Sbjct: 333 LTDMKREYCVADFERVVNFLRERVPGISIATDIICGFPTETEQDFDLTMELCSKHRFPSL 392

Query: 363 FSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFN--DACVGQIIEVLIEK 420
           F  ++ PR+GTP   M     E V  +++    K+L E   S+   D  VGQ   VL+  
Sbjct: 393 FINQFFPRVGTPAYRM-----ERVPTKQVKNRTKRLSELFKSYQPYDDQVGQRQSVLVTD 447

Query: 421 HGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGE 466
              +K   VG +     V++  + + +G +++V IT     +L  E
Sbjct: 448 ISHDKNYYVGHNKEYVQVLVPMEPNYMGKMVEVLITSASKFSLMSE 493


>gi|325279061|ref|YP_004251603.1| MiaB-like tRNA modifying enzyme [Odoribacter splanchnicus DSM
           20712]
 gi|324310870|gb|ADY31423.1| MiaB-like tRNA modifying enzyme [Odoribacter splanchnicus DSM
           20712]
          Length = 428

 Score =  154 bits (388), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 116/397 (29%), Positives = 193/397 (48%), Gaps = 29/397 (7%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N  ++  +      +G E V   + AD+ V+NTC + + A +K    + +I   
Sbjct: 12  TLGCKLNFSETSTIRHSLEKEGTETVADKEGADIFVINTCSVTDMAEKKGRQLIRKI--- 68

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               I       +VV GC AQ   +EI+     V++V+G    + +   L+     ++  
Sbjct: 69  ----IHHNPGAYIVVVGCYAQLRAKEIMAIDG-VSLVLGAGEKFNVAHYLQHLEEQEK-- 121

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
              +S  D F ++S  D  Y+       FL IQ+GCD FCT+C +P+ RG   S SL ++
Sbjct: 122 QEPHSC-DIF-KISNFDLAYSFGDRTRCFLKIQDGCDYFCTYCTIPFARGRSRSASLPRI 179

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270
           +D  R++   G+ E+ L G N   + G+G D     F  LL  L   + + R R ++  P
Sbjct: 180 LDALREVAGKGIQEVILTGVNTGDF-GRGTD---MNFLQLLQQLDRQEEIARFRISSIEP 235

Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330
             ++D +I+        MP+ H+P+QSGSD +LK M+RR+    +   I  IR + PD  
Sbjct: 236 NLLTDEIIEFVATSKRFMPHFHIPLQSGSDEVLKLMHRRYDRELFAGKIRTIRHLLPDAF 295

Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM---LEQVDENVK 387
           I  D I G  GET+  F   +  ++ +  ++   F YS R GT   ++   + Q +++ +
Sbjct: 296 IGVDVIAGMRGETEACFEDALRFIETLDISRLHVFPYSERQGTKALDIPLTVPQEEKHRR 355

Query: 388 AERLLCL-QKKL---------REQQVSFNDACVGQII 414
             RL+ + QKKL           + V F D  +GQ I
Sbjct: 356 VNRLISVSQKKLTAFYHRFEGETRPVLFEDNKIGQYI 392


>gi|86142306|ref|ZP_01060816.1| putative Fe-S oxidoreductase [Leeuwenhoekiella blandensis MED217]
 gi|85831058|gb|EAQ49515.1| putative Fe-S oxidoreductase [Leeuwenhoekiella blandensis MED217]
          Length = 435

 Score =  154 bits (388), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 135/457 (29%), Positives = 224/457 (49%), Gaps = 53/457 (11%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC-HIREKAAEKVYSFLGRI 87
           V + GC  NVYDS  +     +   E V+  ++ +++V+NTC  I     E V + L  +
Sbjct: 13  VVTLGCSKNVYDSEVLMGQLKANQKEVVHE-EEGNVVVINTCGFIANAKEESVNTILEYV 71

Query: 88  RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147
           +  ++  + +     V V GC+++    ++ +  P V+   G      LP LL       
Sbjct: 72  QKKEDGIVDK-----VFVTGCLSERYKPDLQKEIPNVDQYFGTT---ELPGLL------- 116

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
           + +  DY  E   ERL+     Y       A+L I EGCD+ C+FC +P  RG   S  +
Sbjct: 117 KALGADYKHELIGERLTTTPKNY-------AYLKIAEGCDRPCSFCAIPLMRGGHKSTPI 169

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC-TFSDLLYSLSEIKGL--VRLR 264
             +V EA+KL  +G+ E+ L+ Q++  +   GLD  K    + LL  L +++G+  +RL 
Sbjct: 170 EHLVTEAKKLAASGIKELILIAQDLTYY---GLDLYKERALAKLLRELVKVEGIEWIRLH 226

Query: 265 YT--TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE-YRQIIDR 321
           Y   T  P D+ D +     +   +  Y+ +P+Q  S ++LKSM RR T YE    ++  
Sbjct: 227 YAFPTGFPMDVLDVM----NEEPKVCNYIDIPLQHISTKLLKSM-RRGTTYEKTNALLKT 281

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
            R   P +AI +  IVG+PGET +DF    D V ++ + +   F YS    T   N+ + 
Sbjct: 282 FREKVPQMAIRTTLIVGYPGETQEDFELLRDWVKEMRFERLGCFTYSHEENTHAYNLEDD 341

Query: 382 VDENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPW 434
           V E VK ER   ++ LQ ++  +    N   +G+   ++I++  KE    VGR    SP 
Sbjct: 342 VPEEVKMERANEIMALQSQISWE---LNQEKIGKEYRIVIDR--KEGNYFVGRTEFDSPD 396

Query: 435 LQS-VVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468
           + + V++++  H +  G+   V+ITD +   LY   V
Sbjct: 397 VDNEVLIDATQHYLKTGEYTWVKITDAEDFDLYAAPV 433


>gi|325856357|ref|ZP_08172073.1| tRNA methylthiotransferase YqeV [Prevotella denticola CRIS 18C-A]
 gi|325483541|gb|EGC86513.1| tRNA methylthiotransferase YqeV [Prevotella denticola CRIS 18C-A]
          Length = 477

 Score =  154 bits (388), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 117/407 (28%), Positives = 188/407 (46%), Gaps = 23/407 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           RF+  + GC++N  ++       ++ G       + AD+ ++NTC + E A  K    + 
Sbjct: 40  RFY--TLGCKLNFSETSTFARTLYNMGVREAKKSEQADICLINTCSVTEVADHKCRQVIH 97

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE---- 141
           R+       +++     V+V GC AQ E   +      V++V+G      L + L     
Sbjct: 98  RM-------VRQNPGAFVIVTGCYAQLESAAVAGIEG-VDLVLGSNEKADLIQYLSDAWN 149

Query: 142 RARFGKR--VVDTDY-SVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
           R   GK       +Y SV  K   +       +R      FL +Q+GC  FCT+C +PY 
Sbjct: 150 RPEAGKEHGASPAEYHSVRTK--DIRSFQPSCSRGNRTRYFLKVQDGCSYFCTYCTIPYA 207

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258
           RG   + +++ +V +A +    G  EI L G N+  +      GE+  F DL+ +L  ++
Sbjct: 208 RGFSRNPTIASLVSQAEEAAHEGGREIVLTGVNIGDF--GETTGER--FLDLVKALDRVE 263

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           G+ R R ++  P  + D LI         MP+ H+P+QSGSD +LK M+RR+    +   
Sbjct: 264 GIRRYRISSLEPDLIDDELIAYCAQSRAFMPHFHIPLQSGSDEVLKLMHRRYDTALFAHK 323

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           I  I+ + PD  I  D +VG  GE  + F      ++ +   Q   F YS R GT   ++
Sbjct: 324 IRLIKEMMPDAFIGVDVMVGSRGERLEYFEDCYRFLESLPVTQLHVFPYSERPGTSALSI 383

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK 425
              VD+  K  R   L K   E+  +F  A +GQ  +VL EK  + K
Sbjct: 384 PYVVDDREKKRRSHRLLKLSDEKTHAFYAAHIGQEADVLFEKAPRGK 430


>gi|257054056|ref|YP_003131889.1| MiaB-like tRNA modifying enzyme [Halorhabdus utahensis DSM 12940]
 gi|256692819|gb|ACV13156.1| MiaB-like tRNA modifying enzyme [Halorhabdus utahensis DSM 12940]
          Length = 424

 Score =  154 bits (388), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 122/451 (27%), Positives = 205/451 (45%), Gaps = 44/451 (9%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R+ +++YGC  N  +S  +E      G+  V+    AD+ +LNTC + EK          
Sbjct: 3   RYHIETYGCTSNRGESQAIERRLRQGGHYPVDDPSRADVAILNTCTVVEKTE-------- 54

Query: 86  RIRNL--KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
             RN+  + + + E     +V+ GC+A A+GE     +    ++     +  + E +   
Sbjct: 55  --RNMLRRAAELDEETPADLVITGCMALAQGEAFDDAAVDAEIL----HWDEVAEYVRNG 108

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
                  DTD  ++D                 VT  L I  GC   C++C+     G   
Sbjct: 109 ECPTATPDTDVVLDD-----------------VTGILPIARGCLSDCSYCITKQATGTID 151

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           S  + + V +AR+L+D G  E+ + GQ+   +   GL+  +    +LL  + E+ G  R+
Sbjct: 152 SPPVEENVQKARELLDAGARELRITGQDTGVY---GLENGERKLPELLTRICELPGEFRV 208

Query: 264 RYTTSHPRD---MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
           R   ++P+    M + L     + D L  +LH PVQSGSD +L  M RRH   E+++I+ 
Sbjct: 209 RVGMANPKGVYGMHEELADVFAEHDELYNFLHAPVQSGSDDVLVDMRRRHRTPEFKEIVA 268

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
                     +++DFIVGFP ETD DF+ ++DL+  +   +    ++S R GT  +  L+
Sbjct: 269 AFDERLEYWTLATDFIVGFPTETDADFQQSLDLLRDVEPEKVNVTRFSKRPGTDAAE-LD 327

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440
            +   +K ER   +     +   + +DA VG+   VL+ + G E   LVG     + V +
Sbjct: 328 GLGGTIKKERSSAMTDLKMDVVGAAHDAMVGEEHTVLLTQDGTED-SLVGYDEAHRQVAI 386

Query: 441 ---NSKNHNIGDIIKVRITDVKISTLYGELV 468
               S    +GD + V IT        GE +
Sbjct: 387 PEAESMGLELGDFVDVEITGHNTVYALGEPI 417


>gi|283853643|ref|ZP_06370877.1| MiaB-like tRNA modifying enzyme YliG [Desulfovibrio sp. FW1012B]
 gi|283570976|gb|EFC19002.1| MiaB-like tRNA modifying enzyme YliG [Desulfovibrio sp. FW1012B]
          Length = 432

 Score =  154 bits (388), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 134/432 (31%), Positives = 197/432 (45%), Gaps = 41/432 (9%)

Query: 31  SYGCQMNVYDS-LRMEDMFFSQGYERVNSMDD---ADLIVLNTCHIREKAAEK----VYS 82
           S GC  N  D+ + +  + F     R   +DD   ADL+V+NTC     A E+    +  
Sbjct: 11  SLGCPKNRVDTEVALGGLPF-----RTTPVDDPRAADLVVINTCSFIGPAVEESVAAILE 65

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
               IR+L + R K      + V GC+    GE++ R  P V+V   P     LP     
Sbjct: 66  AAEAIRDL-SPRPK------LAVMGCLPARFGEDLRRGLPEVDVWGLPTELDILP----- 113

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
              G+          D   RL+     Y       A+L I EGCD  C +C +P  RG  
Sbjct: 114 ---GRLAEALGAEAADPTGRLASTPPSY-------AYLKIAEGCDHACRYCTIPSIRGGL 163

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR L  +V+EAR L+D GV E+ ++ Q+V A+ G+ L G K     LL  L  + GL  
Sbjct: 164 VSRPLPGLVEEARGLLDRGVSELVVVAQDVTAY-GRDL-GLKDGLQALLEKLLPLSGLKW 221

Query: 263 LRYTTSHPRDMSDCLIK-AHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           LR    +P  ++D L+    G     +PY  +P Q     +L +M R   A +   ++ R
Sbjct: 222 LRLLYLYPSGVTDGLLSFLAGAGRPFVPYFDIPFQHVHPEMLAAMARPKAA-DADTVVGR 280

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R   PD A+ S FIVG PGE  + F+A ++ V +        F Y    GTP + M  Q
Sbjct: 281 VRRHFPDAALRSTFIVGLPGEKKEHFQALLEFVQRARLTHVGVFPYHAEEGTPAAIMPGQ 340

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSVVL 440
           V  +VKA R   +    +       D  VG   EVL++  HG+  G  VGR+ W Q+  +
Sbjct: 341 VRRDVKARRAAAVMAAQKAISADILDGYVGTDQEVLVDAVHGEWPGLHVGRT-WFQAPEI 399

Query: 441 NSKNHNIGDIIK 452
           +   +  G  +K
Sbjct: 400 DGVTYVSGPGVK 411


>gi|302558044|ref|ZP_07310386.1| MiaB-like tRNA modifying enzyme YliG [Streptomyces griseoflavus
           Tu4000]
 gi|302475662|gb|EFL38755.1| MiaB-like tRNA modifying enzyme YliG [Streptomyces griseoflavus
           Tu4000]
          Length = 491

 Score =  153 bits (387), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 131/482 (27%), Positives = 213/482 (44%), Gaps = 44/482 (9%)

Query: 23  VPQRFFVK--SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKV 80
           +P+R  V   + GC  N  DS  +     + G++ V   ++AD+ V+NTC   E A +  
Sbjct: 1   MPERRTVALVTLGCARNEVDSEELAGRLEADGWQLVEDAEEADVAVVNTCGFVEAAKKDS 60

Query: 81  YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140
              L    +LK     +G    VV  GC+A+  G+E+    P  + V+G   Y  + + L
Sbjct: 61  VDALLEANDLKG----QGRTQAVVAVGCMAERYGKELAEALPEADGVLGFDDYADISDRL 116

Query: 141 --------------------------ERARFGKRVVDTDYSVEDKFERLSIVDGGYN--R 172
                                     ER      V    +   D  E L+   G     R
Sbjct: 117 QTILNGGIHASHTPRDRRKLLPISPAERQDSAADVALPGHGPVDLPEGLAPASGPRAPLR 176

Query: 173 KR---GVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLG 229
           +R      A + +  GCD+ C+FC +P  RG  ISR  S V++E R L + GV E+ L+ 
Sbjct: 177 RRLDGSPVASVKLASGCDRRCSFCAIPSFRGSFISRRPSDVLNETRWLAEQGVKEVMLVS 236

Query: 230 QNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMP 289
           +N N   GK L G+      LL  L+E+ G+ R+R +   P +M   LI        ++P
Sbjct: 237 EN-NTSYGKDL-GDIRLLESLLPELAEVDGIERVRVSYLQPAEMRPGLIDVLTSTPKVVP 294

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           Y  L  Q  +  +L++M R      + +++D IRS  P   + S+FIVGFPGE+  D   
Sbjct: 295 YFDLSFQHSAPDVLRAMRRFGDTDRFLELLDTIRSKAPQAGVRSNFIVGFPGESAADLAE 354

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDAC 409
               ++         F YS   GT  +    ++DE+V AERL  + +   E      +  
Sbjct: 355 LERFLNHARLDAVGVFGYSDEEGTEAATYDGKLDEDVVAERLARVSRLAEELVSQRAEER 414

Query: 410 VGQIIEVLIEKHGKEK---GKLVGRSPWLQSVVL--NSKNHNIGDIIKVRITDVKISTLY 464
           VG+ + VL+E   +E+   G+   ++P     VL  + +  +IG +++ ++   +   L 
Sbjct: 415 VGETVHVLVESVDEEEGVHGRAAHQAPETDGQVLLTSGEGLSIGRMVEAKVIGTEGVDLV 474

Query: 465 GE 466
            E
Sbjct: 475 AE 476


>gi|302554558|ref|ZP_07306900.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Streptomyces
           viridochromogenes DSM 40736]
 gi|302472176|gb|EFL35269.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Streptomyces
           viridochromogenes DSM 40736]
          Length = 493

 Score =  153 bits (387), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 125/437 (28%), Positives = 193/437 (44%), Gaps = 39/437 (8%)

Query: 23  VPQRFFVK--SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKV 80
           +P+R  V   + GC  N  DS  +     + G+  V   ++AD+ V+NTC   E A +  
Sbjct: 1   MPERRTVALVTLGCARNEVDSEELAGRLEADGWRLVEDAEEADVAVVNTCGFVEAAKKDS 60

Query: 81  YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140
              L    +LK      G    VV  GC+A+  G+E+    P  + V+G   Y  + + L
Sbjct: 61  VDALLEANDLKG----HGRTQAVVAVGCMAERYGKELAEALPEADGVLGFDDYANISDRL 116

Query: 141 --------------------------ERARFGKRVVDTDYSVEDKFERLSIVDGGYN--R 172
                                     ER      V    ++  D  E L+   G     R
Sbjct: 117 QTILNGGIHAAHTPRDRRKLLPISPAERQDSADAVALPGHAPADLPEGLAPASGPRAPLR 176

Query: 173 KR---GVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLG 229
           +R      A + +  GCD+ C+FC +P  RG  ISR  S V++E R L + GV EI L+ 
Sbjct: 177 RRLDGSPVASVKLASGCDRRCSFCAIPSFRGSFISRRPSDVLNETRWLAEQGVKEIMLVS 236

Query: 230 QNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMP 289
           +N N   GK L G+      LL  L+E+ G+ R+R +   P +M   LI        + P
Sbjct: 237 EN-NTSYGKDL-GDIRLLESLLPELAEVDGIERVRVSYLQPAEMRPGLIDVLTSTPKVAP 294

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           Y  L  Q  +  +L++M R      + +++D IR+  P+  + S+FIVGFPGE++ D   
Sbjct: 295 YFDLSFQHSAPGVLRAMRRFGDTDRFLELLDTIRNKAPEAGVRSNFIVGFPGESEADLAE 354

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDAC 409
               ++         F YS   GT  +    ++DE+V AERL  + +   E      +  
Sbjct: 355 LERFLNGARLDAIGVFGYSDEEGTEAATYDGKLDEDVVAERLARVSRLAEELVSQRAEER 414

Query: 410 VGQIIEVLIEKHGKEKG 426
           VGQ + VL+E    E+G
Sbjct: 415 VGQTVHVLVESVDDEEG 431


>gi|66576257|gb|AAY51688.1| MiaB-like tRNA modifying enzyme [Chlorobium tepidum TLS]
          Length = 446

 Score =  153 bits (387), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 127/440 (28%), Positives = 216/440 (49%), Gaps = 47/440 (10%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDD-ADLIVLNTCHIREKAAEKVYSFLGRI-R 88
           + GC++N  ++  + D   SQG++ +N++DD AD+++++TC +  +A  K    + +I R
Sbjct: 10  TLGCKVNYAETSSIVDALVSQGWQ-LNAIDDGADVLIIHTCAVTGEAERKSRQQIRKIIR 68

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ-----TYYRLPELLERA 143
           N   SR+         V GC AQ + + I      V+ V+G        +Y    L   +
Sbjct: 69  NHPGSRVG--------VIGCYAQLDPKRIADIKG-VSFVLGTTDKFEIAWYDGESLPNDS 119

Query: 144 RFGKRV--VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
               +V  VD   +       LS  + G  R     AFL IQ+GC   C +C +P  RG 
Sbjct: 120 EPLVKVSPVDKAITAHPACSMLSQPEKGRTR-----AFLKIQDGCSFGCAYCSIPLARGR 174

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
             S SLS V+D A+K+ D G  EI L G N+  ++    DG+    S LL  L  I  + 
Sbjct: 175 SRSVSLSTVLDRAQKIADAGYREIVLTGINIGDYQ----DGDT-RLSGLLRRLETID-VS 228

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R ++  P+ + D LI        +MP+ HLP+QSGSD +L++M R +    YR+ + +
Sbjct: 229 RIRISSVEPQLLDDELIDIVAASGKIMPHFHLPLQSGSDTVLRAMRRHYDTAFYRERLMK 288

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
             S+    AI +D +VG+PGE++ DF      ++++  A    F  SPR   PG+ +  +
Sbjct: 289 ALSLIRGCAIGADVMVGYPGESERDFEEMCRFIEELPVAYLHVFTCSPR---PGTKLFAE 345

Query: 382 VDE-----------NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG 430
           + E           + +A RL  + +++  +   F +A +G  ++VL E+     G  V 
Sbjct: 346 IAEKKLIRIPSAESSSRAARLGVIGERIERR---FAEAFIGSTLKVLFEEASALPGGAVR 402

Query: 431 RSPWLQSVVLNSKNHNIGDI 450
            S + +  +  S + + G++
Sbjct: 403 WSGYSEHYLRVSVDTSAGEL 422


>gi|315638251|ref|ZP_07893433.1| 2-methylthioadenine synthetase [Campylobacter upsaliensis JV21]
 gi|315481787|gb|EFU72409.1| 2-methylthioadenine synthetase [Campylobacter upsaliensis JV21]
          Length = 413

 Score =  153 bits (387), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 112/399 (28%), Positives = 203/399 (50%), Gaps = 39/399 (9%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + F+K++GC+ N+YDS  ++   + + +E  N+  +AD++++N+C +   A   + ++  
Sbjct: 3   KIFLKTFGCRTNIYDSELIKG--YIKDFELTNNEKEADIVLINSCTVTNGADSGLKTY-- 58

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-ERAR 144
            I +LK + IK      V++ GC A ++G+E+L    I  V+ G     ++ E L E+ R
Sbjct: 59  -INSLKKNNIK------VILTGCAAVSKGKELLDNGAIFGVL-GASNKAKINEFLKEKKR 110

Query: 145 FGK----RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           F +      +D D           IV    N  +   AF+ IQEGCD  C++C++P  RG
Sbjct: 111 FYELGNLNFIDKD-----------IVKDYENHTK---AFVKIQEGCDFNCSYCIIPSVRG 156

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
              S   S ++++ + LI NG  EI L G N+ ++  K  DG   T   LL  + +I GL
Sbjct: 157 RSRSVKESDLLEQIKILIQNGYTEIVLTGTNIGSYGLK--DG--TTLGKLLQKMMQISGL 212

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R  +  P  + +  ++   D  +L  +LH+ +Q  S+ +L+ M RR    +  ++  
Sbjct: 213 KRIRLGSLEPAQIDESFMEIL-DEKLLERHLHIALQHTSETMLRIMRRRSHTKDDLRLFQ 271

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
            + S     A+ +DFIVG PGE+++ ++  +    +       +F +SPR  T  + +  
Sbjct: 272 TLAS--KGFALGTDFIVGHPGESEELWQEALRNFTEFKLTHLHAFIFSPRNNTHSATLKN 329

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419
            +  ++  ERL  L+  +++    F  A   + +EVLIE
Sbjct: 330 TIKGDLAKERLNTLKAIVQKNNFEFRKANKIK-LEVLIE 367


>gi|195150351|ref|XP_002016118.1| GL10666 [Drosophila persimilis]
 gi|194109965|gb|EDW32008.1| GL10666 [Drosophila persimilis]
          Length = 553

 Score =  153 bits (387), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 132/463 (28%), Positives = 225/463 (48%), Gaps = 42/463 (9%)

Query: 20  QCIVP--QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA 77
           + ++P  Q+ FVK++GC  N  DS  M     + GY +++  D+ADL +LN+C ++  + 
Sbjct: 65  ESVIPGTQKVFVKTWGCAHNNSDSEYMAGQLAAYGY-KLSGKDEADLWLLNSCTVKNPSE 123

Query: 78  EKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQ-AEGEEILRRSPIVNVVVGPQTYYRL 136
           +         RN   S +  G    VVVAGCV Q A   + LR       V+G Q   R+
Sbjct: 124 DT-------FRNEIESGMSNGKH--VVVAGCVPQGAPKSDYLRGL----SVIGVQQIDRV 170

Query: 137 PELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
            E++E    G  V +  +  V  +    + +     RK  +   ++I  GC   CT+C  
Sbjct: 171 VEVVEETLKGHSVRLLQNKKVHGRRVAGAPLSLPKVRKNPLIEIISINTGCLNQCTYCKT 230

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
            + RG   S    ++VD AR+    G CEI L  ++  A+ G+ +     +  +LL+ L 
Sbjct: 231 KHARGDLASYPPEEIVDRARQSFAEGCCEIWLTSEDTGAY-GRDIGS---SLPELLWKLV 286

Query: 256 EI--------KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307
           E+         G+    Y   H  +++  L         +  +LH+PVQSGSD +L  M 
Sbjct: 287 EVIPEHCMLRVGMTNPPYILEHLEEVAKVLQHPR-----VYAFLHVPVQSGSDSVLGEMK 341

Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           R +   ++  ++D +R   P + I++D I GFP ET++DF  TM L  +  +   F  ++
Sbjct: 342 REYCRKDFEHVVDFLRERVPGVTIATDIICGFPTETEEDFEETMTLCGRYRFPSLFINQF 401

Query: 368 SPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDAC--VGQIIEVLIEKHGKEK 425
            PR GTP + M E++  N+  +R     K+L +   S+      VG++  VL+ +   +K
Sbjct: 402 FPRPGTPAAKM-ERIPANLVKKR----TKRLTDLFYSYEPYAQRVGEMYTVLVTEISHDK 456

Query: 426 GKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
              VG +   + V+L  +++ +G  + VRIT V   ++ GE++
Sbjct: 457 LHYVGHNKSYEQVLLPMRDNLLGTRVHVRITSVSKFSMVGEIL 499


>gi|296446184|ref|ZP_06888132.1| MiaB-like tRNA modifying enzyme [Methylosinus trichosporium OB3b]
 gi|296256378|gb|EFH03457.1| MiaB-like tRNA modifying enzyme [Methylosinus trichosporium OB3b]
          Length = 400

 Score =  153 bits (387), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 110/356 (30%), Positives = 165/356 (46%), Gaps = 55/356 (15%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V ++GC++NV DS         Q       +   DL+++NTC +  +A  +    + R+ 
Sbjct: 6   VVTFGCRLNVVDS---------QSLLSDARVKGGDLVIVNTCAVTAEATRQARQAIRRLH 56

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
             + S         +VVAGC A+                + P ++  +  +        R
Sbjct: 57  RERPS-------AEIVVAGCAAR----------------IDPASFATMAGV-------TR 86

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           V+      +D     S  +G         AFL +Q GCD  C+FCV+P+ RG   S + +
Sbjct: 87  VLG---EAQDAPLARSASEGQTR------AFLAVQNGCDHRCSFCVIPFGRGPSRSAAPA 137

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS-LSEIKGLVRLRYTT 267
            V+ EAR+L+  G  EI L G ++ ++R      E  T   L    L     L RLR ++
Sbjct: 138 DVIAEARRLVAVGRREIVLTGVDLTSYRH-----EDVTLGALAREILRATPQLERLRLSS 192

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
               +    L+   G+   L P+LHL +QSG D  LK M RRH+  +       +R  RP
Sbjct: 193 IDCIETDADLLDLMGEEPRLAPHLHLSLQSGDDLTLKRMKRRHSRADAIHFCAEMRDARP 252

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           DI + +DFI GFP ET+D F  T+DLV++ G      F +SPR GTP + M  QVD
Sbjct: 253 DIVLGADFIAGFPTETEDMFARTLDLVEECGLTHLHVFPFSPRPGTPAARM-PQVD 307


>gi|189218450|ref|YP_001939091.1| 2-methylthioadenine synthetase [Methylacidiphilum infernorum V4]
 gi|238066396|sp|B3DYX1|RIMO_METI4 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|189185308|gb|ACD82493.1| 2-methylthioadenine synthetase [Methylacidiphilum infernorum V4]
          Length = 445

 Score =  153 bits (387), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 125/444 (28%), Positives = 214/444 (48%), Gaps = 34/444 (7%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC-HIREKAAEKVYSFLGRIRN 89
           S GC  N+ DS  M       G     S   AD++++NTC  I     E + + L  I  
Sbjct: 14  SLGCSKNLVDSEIMLGKLLEAGAVLTASPHQADILLINTCGFILPAKKESIDTILAAIHR 73

Query: 90  LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149
              +  K+     +VV+GC+ Q  G+E+    P V++ +G      L ++ +   + K++
Sbjct: 74  RTTTSKKQK----IVVSGCLYQRYGKELSALLPEVDLFLG------LDDIPKIDLYVKQL 123

Query: 150 VDTDYSVED----KFERLSIVDGGYNRKRGVTA---FLTIQEGCDKFCTFCVVPYTRGIE 202
           +DT  S ++     F    I D  + R +   +   +L I EGC+  CTFC++P  RG  
Sbjct: 124 IDTPPSSKEMPALNFSPRFIPDFEHPRLKLTPSHFGYLKIAEGCNHPCTFCIIPRIRGRY 183

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR++  VV EA  +I  G  EI L+ Q+   +     +G+     DLL SL  ++G   
Sbjct: 184 RSRTIQNVVAEAEAMIRRGTKEIILVSQDTTFYGRDLSNGQSSLLVDLLDSLETLEGDFW 243

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R   +HP   +  LI+       +  Y+ +P+Q  S+ +L+ M R+      R+++  +
Sbjct: 244 IRLLYTHPAHWNASLIEKFSTSKKIAKYIDIPIQHISNPVLERMQRKTEESYIRELLAEM 303

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+   + AI +  IVGFPGE+++DF+     V    + +   F YS   GT    M  QV
Sbjct: 304 RTKIKNAAIRTTLIVGFPGESEEDFQKLCSFVSSFKFDRLGVFPYSAEEGTKAEKMNGQV 363

Query: 383 DENVK---AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPW----L 435
            E VK   A++++ LQK++ +++   N   VG+ ++VL++  G      V R+ W    +
Sbjct: 364 PEIVKKRRAKKIMELQKEIAKEK---NKELVGKTLKVLVDYPG------VARTEWDCPDV 414

Query: 436 QSVVLNSKNHNIGDIIKVRITDVK 459
            ++V    +   G   +V+I D K
Sbjct: 415 DALVHVPYHLPPGHFTEVKIVDFK 438


>gi|84685287|ref|ZP_01013185.1| RNA modification enzyme, MiaB-family protein [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84666444|gb|EAQ12916.1| RNA modification enzyme, MiaB-family protein [Rhodobacterales
           bacterium HTCC2654]
          Length = 455

 Score =  153 bits (387), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 125/450 (27%), Positives = 204/450 (45%), Gaps = 38/450 (8%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC   + DS R+     ++GY        AD +++NTC   + A  +    +G   N 
Sbjct: 32  SLGCPKALVDSERILTRLRAEGYAISPDYAGADAVIVNTCGFLDSAKAESLEAIGEALN- 90

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
           +N R        V+V GC+  A+ E I    P V  V GP  Y ++ + + +A   +   
Sbjct: 91  RNGR--------VLVTGCLG-ADPEYITGAHPSVLAVTGPHQYEQVLDAVHKAVPPQ--- 138

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
                  D F  L    G     R  + +L I EGC+  C FC++P  RG   SR    +
Sbjct: 139 ------PDPFVDLLPATGVTLTPRHYS-YLKISEGCNHACKFCIIPDMRGKLQSRPAHAI 191

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLD-------GEKCTFSDLLYSLSEIKGLVRL 263
           V EA KL++ GV E+ ++ Q+ +A+   GLD       G +   +DL   L  +   VRL
Sbjct: 192 VREAEKLVEAGVKELLVISQDTSAY---GLDLKYAEERGHRAHITDLARDLGSLGAWVRL 248

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
            Y   +P       + A G   +++PYL +P Q     +LK M R   A      I   R
Sbjct: 249 HYVYPYPHVRELIPLMAEG---LILPYLDIPFQHADTGVLKRMARPAAAARTLDEIAAWR 305

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
            + PDI++ S FIVG+PGET+D+F+  +D +D+    +   F+Y    G   + + + V 
Sbjct: 306 EICPDISLRSTFIVGYPGETEDEFQVLLDWMDEAQLDRVGCFQYENVDGARSNALPDHVP 365

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG--KLVGRSPWLQSVVLN 441
           + VK ER     +K +    +   A VG+ IEV++++  ++    +    +P +   +  
Sbjct: 366 DEVKEERWHRFMEKAQAISEAKLAAKVGKTIEVIVDEVEEDAATCRTKADAPEIDGCLFI 425

Query: 442 SKNHN---IGDIIKVRITDVKISTLYGELV 468
            + H     G I+ V + +     L+G L 
Sbjct: 426 DEGHEDLKPGQIVSVVVDEAGEYDLWGRLA 455


>gi|302772983|ref|XP_002969909.1| hypothetical protein SELMODRAFT_31574 [Selaginella moellendorffii]
 gi|300162420|gb|EFJ29033.1| hypothetical protein SELMODRAFT_31574 [Selaginella moellendorffii]
          Length = 421

 Score =  153 bits (387), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 121/416 (29%), Positives = 195/416 (46%), Gaps = 40/416 (9%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
            F+K++GC  N  DS  M     + GY+     D+ADL ++NTC ++  +   + +    
Sbjct: 2   IFLKTFGCAHNQSDSEYMAGQLLAYGYKISEDPDEADLWLINTCTVKAPSQSAMETL--- 58

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           IR  K   I       +V+AGCV Q  G + L+    V+VV G Q   R+ E++E    G
Sbjct: 59  IRKGKAQTIP------LVIAGCVPQ--GSKDLKDLEGVSVV-GVQQIQRVVEVVEETLKG 109

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
             V     S       L  +D    RK      + I  GC   CT+C   + RG   S  
Sbjct: 110 HEVKLLRRST------LPSLDLPKVRKNKFVEIIPINVGCLGSCTYCKTKHARGHLGSYK 163

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK-------- 258
           +  +V   + ++  GV EI L  ++  A+ G+ +  +  T    L  ++E+         
Sbjct: 164 IEALVKRLQGVVSEGVTEIWLSSEDTGAY-GRDIGSDIPTLLRAL--VAELPRDRSVMLR 220

Query: 259 -GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
            G+    Y   H +++++ L         +  +LH+PVQSGSD +L++M R +T  E++Q
Sbjct: 221 IGMTNPPYILQHLKEIAEILRHP-----CVYSFLHVPVQSGSDSVLEAMKREYTVAEFKQ 275

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
           + D +  + PDI I++D I GFPGET D+F  TM+L++   + Q    ++ PR GTP + 
Sbjct: 276 VADTLIELVPDIHIATDIICGFPGETSDEFDKTMELIEHYKFPQVHISQFYPRPGTPAAR 335

Query: 378 MLEQVDENVKA-ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS 432
           M       VK   RLL     L E    ++D   G++  V +     +   LVG +
Sbjct: 336 MKRVPTAEVKKRSRLLT---SLFESFTPYSDM-EGKVYRVWVTDTAADGIHLVGHT 387


>gi|170579583|ref|XP_001894893.1| MiaB-like tRNA modifying enzyme, archaeal-type family protein
           [Brugia malayi]
 gi|158598345|gb|EDP36257.1| MiaB-like tRNA modifying enzyme, archaeal-type family protein
           [Brugia malayi]
          Length = 447

 Score =  153 bits (387), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 117/419 (27%), Positives = 205/419 (48%), Gaps = 28/419 (6%)

Query: 44  MEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLV 103
           M  +  + G++  N  +DA L +LN+C ++  +  ++ + +   R L            +
Sbjct: 1   MAGLLSAAGHQLTNKKEDASLWILNSCTVKTPSETQLENMVREARKLNK---------FI 51

Query: 104 VVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERL 163
           +VAGCV+QAE    LR    +++V G +    + + +E    G  V       ++    L
Sbjct: 52  IVAGCVSQAEPN--LRFLDGISIV-GVKQIECVTQAVEETLKGNCVRFLSRRKQNSNLLL 108

Query: 164 SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVC 223
             +     RK      L I  GC   CT+C     RG  +S  L  +++ AR    +G  
Sbjct: 109 PKI-----RKNKFVEILAISSGCLNHCTYCKTKSARGNLVSYPLDSLLERARNAFADGCK 163

Query: 224 EITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI--KGLVRLRYTTSHPRDMSDCLIKAH 281
           E+ L  +++ AW G+ +D       DLL +L EI  +G + LR   ++P  + D L +  
Sbjct: 164 ELWLTSEDLGAW-GRDID---MVLPDLLNALVEIIPEGCM-LRLGMTNPPYILDFLEEIS 218

Query: 282 GDLDV--LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGF 339
             L+   +  +LH+PVQS SD +L  M R +T  ++ +++D +    P+I I++DFI  +
Sbjct: 219 EILNHPRVYSFLHIPVQSASDAVLSDMKREYTCTDFCRVVDYMIQNVPNIYIATDFICAY 278

Query: 340 PGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLR 399
           P ET+ DF  +M LV K  +   F  ++ PR+GTP +N L+++D  ++A R       L 
Sbjct: 279 PTETESDFEESMALVRKYRFPSLFINQFYPRIGTPAAN-LKKID-TIEARRRTAEMSSLF 336

Query: 400 EQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDV 458
                +N   +G+   VL+ +   ++   VG +   +  ++ SK   +G  ++VRITDV
Sbjct: 337 RSYSRYNKERIGEKHRVLVCELATDQQHYVGHNKHYEHFLIPSKKCLLGKWVQVRITDV 395


>gi|78188544|ref|YP_378882.1| hypothetical protein Cag_0566 [Chlorobium chlorochromatii CaD3]
 gi|78170743|gb|ABB27839.1| Protein of unknown function UPF0004 [Chlorobium chlorochromatii
           CaD3]
          Length = 470

 Score =  153 bits (386), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 111/414 (26%), Positives = 202/414 (48%), Gaps = 37/414 (8%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD-DADLIVLNTCHIREKAAEKVY 81
           + QR    + GC++N  +S  +    + +G+E V+  D   DLI++++C +  +A +K  
Sbjct: 5   IKQRVAALTLGCKLNYAESSALLSALWQKGWEVVSLHDGKVDLIIIHSCAVTAQAEQKGR 64

Query: 82  SFLGRI-RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140
             +  + RN   SRI        +V GC AQ    ++      V+ V+G    +   EL 
Sbjct: 65  QKIRALHRNYPTSRI--------MVIGCAAQLH-PDVFAAIEGVDGVLGSNDKF---ELS 112

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYN------RKRGVTAFLTIQEGCDKFCTFCV 194
              R   +  +         E    +  G++      ++    AFL IQ+GC+  C +CV
Sbjct: 113 HYERVMAKKCNKPLVCITPMEHCKTIHHGFSLPATLAKQERTRAFLKIQDGCNAGCAYCV 172

Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL 254
           +P+ RG   S   +Q+V++A +L  +G  EI L G N+  +   G+D        LL +L
Sbjct: 173 IPHLRGASRSLPANQLVEQAHRLAASGYREIVLTGVNIGDYWADGVD-----LCGLLRAL 227

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
           +E+  + RLR +++    +SD LI+       ++P+LH+P+Q GSD +L++M RR+T   
Sbjct: 228 AEVP-VSRLRLSSTELEALSDELIELVAASPTIVPHLHVPLQGGSDSLLRAMRRRYTTAM 286

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
           YR  I+R      + AI  D +VG+P ET++ F  +M  ++ +  +    F  S R   P
Sbjct: 287 YRARIERAVERIANCAIGVDIMVGYPSETEEMFHESMAFIEALPLSYLHVFSCSLR---P 343

Query: 375 GSNMLEQVDE--------NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
            + + ++V          ++ AER   +     +++ +F    +G ++ VL+E+
Sbjct: 344 HTLLADEVARQERKALSGDIVAERSRQMVALGHQKEAAFKQRFLGAVMPVLLEQ 397


>gi|15790759|ref|NP_280583.1| hypothetical protein VNG1861C [Halobacterium sp. NRC-1]
 gi|169236502|ref|YP_001689702.1| hypothetical protein OE3617F [Halobacterium salinarum R1]
 gi|10581306|gb|AAG20063.1| conserved hypothetical protein [Halobacterium sp. NRC-1]
 gi|167727568|emb|CAP14356.1| conserved hypothetical protein [Halobacterium salinarum R1]
          Length = 432

 Score =  153 bits (386), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 122/449 (27%), Positives = 205/449 (45%), Gaps = 40/449 (8%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R+ +++YGC  N  +S  +E      G+ +V +  DAD+ +LNTC + EK      + L 
Sbjct: 3   RYHIETYGCTSNRGESRDIERRLRDAGHHKVETAADADVAILNTCTVVEKTER---NMLR 59

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R + L +    E  DL+V   GC+A A+GE          V+     +  +PE +     
Sbjct: 60  RAKELAD----ETADLIVT--GCMALAQGEAFADADVDAQVL----HWDDVPEAVTNGEC 109

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                D +           I+D       GV   L I  GC   C++C+     G   S 
Sbjct: 110 PTTTPDAE----------PILD-------GVVGILPIARGCMSNCSYCITKQATGRVDSP 152

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKGLVRLR 264
            + + V++AR L+  G  EI + GQ+   +   G D  +    +LL  + +EI+G  R+R
Sbjct: 153 PVEENVEKARALVHAGAKEIRITGQDTGVY---GWDTGERKLPELLERIATEIEGEFRVR 209

Query: 265 YTTSHP---RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
              ++P     + + L     + D +  +LH PVQSGSD +L  M R+H   +YR I++ 
Sbjct: 210 VGMANPGGVHGIREELAAVFAEHDEIYNFLHAPVQSGSDDVLADMRRQHEVSQYRDIVET 269

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
                 +  +S+DFIVGFP E DDD  A+MDL+ +    +    ++S R GT  +  L+ 
Sbjct: 270 FNDTLGEWTLSTDFIVGFPTEDDDDHEASMDLLRETRPEKINVTRFSKRPGTDAAE-LKG 328

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           +    K +R   + +   +     +++ VG   +VL+ + G           + Q +V N
Sbjct: 329 LGGQTKKDRSKAMTELKMDVVGEAHESMVGTRRDVLVVEEGTGDSVKCYDGAYRQVIVQN 388

Query: 442 SKNHNI--GDIIKVRITDVKISTLYGELV 468
           + +H +  GD   V +T  +    + E V
Sbjct: 389 ATDHGLEPGDFATVEVTSHQTVYAFAEPV 417


>gi|85372941|ref|YP_457003.1| ribosomal protein S12 methylthiotransferase [Erythrobacter
           litoralis HTCC2594]
 gi|123409738|sp|Q2NDN5|RIMO_ERYLH RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|84786024|gb|ABC62206.1| hypothetical protein ELI_00570 [Erythrobacter litoralis HTCC2594]
          Length = 462

 Score =  153 bits (386), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 126/487 (25%), Positives = 221/487 (45%), Gaps = 61/487 (12%)

Query: 13  MVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHI 72
           + S I DQ    ++  + S GC   + DS R+     + GY        AD++++NTC  
Sbjct: 4   ITSAIPDQ----KKVGMVSLGCPKALVDSERILTRLRADGYAMSADYAGADVVLVNTCGF 59

Query: 73  REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT 132
            + A E+  + +G         I E G   V+V GC+ + E + I    P V  V G   
Sbjct: 60  LDSAKEESLAAIGEA-------IAENGR--VIVTGCMGE-EADAIRAAHPQVLAVTGAHQ 109

Query: 133 YYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTF 192
           Y  +   +       +    D   +     + +    Y+       +L I EGC+  C F
Sbjct: 110 YEAVVGAVHEHAPPSQGPYVDLIPQPSEADIKLTPRHYS-------YLKISEGCNHSCAF 162

Query: 193 CVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLD 241
           C++P  RG   SR +  V+ EA KL+  G  E+ ++ Q+ +A           W+G+ + 
Sbjct: 163 CIIPQLRGKLASRRIDAVLREAEKLVAAGTKELLVISQDTSAYGVDTRHEAKSWKGREV- 221

Query: 242 GEKCTFSDLLYSLSEI------KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPV 295
             +   +DL   L ++         VRL Y   +P   +   + A G   +L PYL +P 
Sbjct: 222 --RAHMTDLARELGQLDTGDGTPPWVRLHYVYPYPHVDAVIPLMAEG---LLTPYLDIPF 276

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
           Q  S ++LK+M R     +  + +   R++ P+IA+ S F+VGFPGET+DDFR  ++ ++
Sbjct: 277 QHASPKVLKAMKRPANEAKVLERLKGWRAICPEIAVRSSFVVGFPGETEDDFRYLLEWLE 336

Query: 356 KIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQ 412
           +    +  +F++ P  G   + + + V E VK E   R++ L  ++  +++      +G+
Sbjct: 337 EARLDRVGAFRFEPVEGAAANALPDPVPEEVKEERYARIMELTARISAEKLQRK---IGR 393

Query: 413 IIEVLIEKHGK--EKGKL--VGRS----PWLQSVVL---NSKNHNIGDIIKVRITDVKIS 461
            + V+I++ G+  E G +   GRS    P +   V           GDI++V + D    
Sbjct: 394 ALPVIIDEVGEPDEDGDIGATGRSQADAPEIDGAVYLRNVPATLAAGDIVQVTVEDADEH 453

Query: 462 TLYGELV 468
            L+G + 
Sbjct: 454 DLFGAIA 460


>gi|332827121|gb|EGJ99906.1| ribosomal protein S12 methylthiotransferase rimO [Dysgonomonas
           gadei ATCC BAA-286]
          Length = 431

 Score =  153 bits (386), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 125/460 (27%), Positives = 216/460 (46%), Gaps = 50/460 (10%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEKVYSF 83
           R  V + GC  N+ DS  +     + GY   +  D  + +++V+NTC     A E+  + 
Sbjct: 5   RIDVITLGCSKNLVDSELLMKQLLANGYTVKHDPDKSEGEIVVINTCGFIGDAKEESINM 64

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +      K  R        + V GC+     EE+    P V+   G              
Sbjct: 65  ILEFAEAKKERKLNK----LFVMGCLTDRYMEELKAEIPEVDSFYG-------------- 106

Query: 144 RFGKRVVDTD----YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           +FG + + +D    Y  E   ER       Y       A+L I EGC++ C++C +P   
Sbjct: 107 KFGWKALISDLGKSYHKELALERNITTPSHY-------AYLKISEGCNRACSYCSIPIMT 159

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK-CTFSDLLYSLSEIK 258
           G   SR + +V +E R L+ +GV E  ++ Q+++ +   GLD  K     +L+  +++I+
Sbjct: 160 GKHQSRQIEEVEEEVRHLVASGVKEFQVIAQDLSYY---GLDNYKQAKLPELIDRIAKIE 216

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           G+  +R   ++P +    L+    + + +  YL + +Q  SD +LK M R  T  +   +
Sbjct: 217 GVEWIRLHYAYPANFPYDLLPVMRNNENVCKYLDIALQHISDNMLKKMRRNITKEQTYNL 276

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG-SN 377
           I RIR   P I I +  +VG PGE+  DF   +  V  + + +  +F YS   GT   ++
Sbjct: 277 IKRIREEVPGIHIRTTLMVGHPGESHKDFEELLQFVKDVRFDRMGAFPYSHEDGTYAYAH 336

Query: 378 MLEQVDENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR--- 431
             +++ + VK ER   L+ LQ+++    +  N+  +G  ++V++++  +E    +GR   
Sbjct: 337 YRDEISDAVKQERMDVLMALQERI---ALDINEQKIGNTLKVIVDR--EESDYYIGRTEY 391

Query: 432 -SPWLQSVVLNSKNH--NIGDIIKVRITDVKISTLYGELV 468
            SP +   VL  KN   NIGD   VRIT  +   LYGE++
Sbjct: 392 DSPEVDPEVLIKKNKMLNIGDFYNVRITGAQPFDLYGEVI 431


>gi|115950365|ref|XP_001188890.1| PREDICTED: similar to CDK5 regulatory subunit associated protein
           1-like 1 [Strongylocentrotus purpuratus]
          Length = 660

 Score =  153 bits (386), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 129/470 (27%), Positives = 211/470 (44%), Gaps = 59/470 (12%)

Query: 22  IVP--QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEK 79
           I+P  Q+ FVK++GC  N  D   M     S GY   +    AD+ +LN+C ++  A + 
Sbjct: 56  IIPGTQKVFVKTWGCSHNNSDGEYMAGQLASYGYSITDDSSGADVWLLNSCTVKNPAED- 114

Query: 80  VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL 139
                   RN      ++G  L  V+AGCV Q + +    +      V+G Q   R+ E+
Sbjct: 115 ------HFRNEIQKAQQQGKAL--VLAGCVPQGQPKAKYMQG---VSVIGVQQIDRVVEV 163

Query: 140 LERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
           +E    G  V +        K    + +D    R+  +   L I  GC   CT+C   + 
Sbjct: 164 VEETVKGNTVRLFGQKKQGGKKIGGASLDLPKIRRNPLVEILAINTGCLNQCTYCKTKHA 223

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD----------------G 242
           RG   S    ++V  A++  D GVCEI L  ++  A+   G+D                 
Sbjct: 224 RGELGSYPPEELVARAKQSFDEGVCEIWLTSEDTGAY---GIDIGVTIVELLDQLVEVIP 280

Query: 243 EKCTF----SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
           E C      ++  Y L  ++G+ R+     HPR  S               +LH+P+QSG
Sbjct: 281 EGCMMRIGMTNPPYILDHLEGIARI---LRHPRVYS---------------FLHIPIQSG 322

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           SD +L  M R +   ++R+I++ +R   P + I++D I GFP E++ DF  T+ L+++  
Sbjct: 323 SDSVLMDMKREYCTADFRKIVEFLRKEVPRVTIATDIICGFPHESEKDFEETLSLIEEFK 382

Query: 359 YAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI 418
           +   F  +Y PR GTP +    QV    K  R   L    +  Q +++D  VG+  +VL+
Sbjct: 383 FPSVFINQYFPRPGTPAAKW-PQVPAQEKKRRTKALTVLFKSYQ-TYDDK-VGERFDVLV 439

Query: 419 EKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            +   +K  LV  + +   V++      +G I+KV I  V    L G ++
Sbjct: 440 TEVSHDKQYLVAHNKFYDQVLVPHNKEYLGRILKVEIESVGKHFLMGRVL 489


>gi|332702710|ref|ZP_08422798.1| Ribosomal protein S12 methylthiotransferase rimO [Desulfovibrio
           africanus str. Walvis Bay]
 gi|332552859|gb|EGJ49903.1| Ribosomal protein S12 methylthiotransferase rimO [Desulfovibrio
           africanus str. Walvis Bay]
          Length = 438

 Score =  153 bits (386), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 121/426 (28%), Positives = 189/426 (44%), Gaps = 42/426 (9%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC-HIREKAAEKVYSFL 84
           + +  S GC     DS R+           V+  +DA LI +NTC  IR    E + + L
Sbjct: 5   KIYSVSLGCPKTRVDSERLLGALGK--VCPVDKPEDAQLIFINTCGFIRPAVEESLQAVL 62

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
                   +  +     L+ VAGC+      E+    P V++ +        P +     
Sbjct: 63  DAASAAGETDARN--RPLLAVAGCLVSRYAGELSPEMPEVDLWLPLDAMDHWPSM----- 115

Query: 145 FGKRVVDTDYSVEDKFERLSIVDG----GYNRKRGVT---AFLTIQEGCDKFCTFCVVPY 197
                      V +  +R  +  G     +  + G     A+L + EGC   C+FC +P 
Sbjct: 116 -----------VSEALQRRGLAQGPELAAWPARFGGPVSYAYLKVSEGCSHACSFCTIPS 164

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW--RGKGLDGEKCTFSDLLYSLS 255
            RG   S    +++ EAR L+D GV E+ L+ Q++ A+    +G DG       LL  L 
Sbjct: 165 IRGKLRSEPADRLLVEARMLLDRGVSELVLVAQDLTAYGREAEGSDG----LIRLLEQLL 220

Query: 256 EIKGLVRLRYTTSHPRDMSDCLI---KAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
            + GL RLR    +P  ++D L+   +  G    L+PY  +P+Q     IL  M R    
Sbjct: 221 PLSGLARLRLMYLYPAGLTDELLSFLRTAGA--PLLPYFDIPLQHAHPEILSRMGRPFAR 278

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
             +R ++DR+R   P+ AI +  I GFPGET + F+  +D V K        F Y P  G
Sbjct: 279 DPWR-VLDRVRERFPEAAIRTSLIAGFPGETQEHFQTLLDFVRKARLTHLGVFPYWPEEG 337

Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGR 431
           T  + M  QVDE++K ER+  L +   E         VGQ ++VL+++   +  G  +GR
Sbjct: 338 TAAAGMEGQVDEDIKQERVRLLMEAQEEISEELMAGYVGQELDVLVDEPSPDWPGLHIGR 397

Query: 432 SPWLQS 437
           + W Q+
Sbjct: 398 A-WFQA 402


>gi|328947215|ref|YP_004364552.1| RNA modification enzyme, MiaB family [Treponema succinifaciens DSM
           2489]
 gi|328447539|gb|AEB13255.1| RNA modification enzyme, MiaB family [Treponema succinifaciens DSM
           2489]
          Length = 484

 Score =  153 bits (386), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 122/469 (26%), Positives = 210/469 (44%), Gaps = 84/469 (17%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA-EKV 80
           +  ++FF+  +GC  N  D   +       G+E+V   + ADLI++N+C   E A  E +
Sbjct: 1   MTSKKFFLDQHGCAKNQVDGELIMSRLLRLGFEQVFEPEKADLIIVNSCGFIESAKKESL 60

Query: 81  YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140
            S +G      N++I        ++AGC+A+   +   +  P  + +VG        EL+
Sbjct: 61  DSLIGARSAFPNAKI--------LLAGCLAERYADVFKKDLPEADGIVGNGNL----ELI 108

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGV-------------TAFLTIQEGCD 187
                       D +V+D FE    V      ++GV             +AF+ I EGCD
Sbjct: 109 ------------DSAVKDLFEEKRPVLKA--EQKGVCCGERNSLLSFKGSAFVKITEGCD 154

Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW----RGKGLDGE 243
             C+FC +P  RG   SR+  ++V E + L+  G+ E+ L+GQ++ A+      K    E
Sbjct: 155 NKCSFCAIPIIRGKLRSRNSDEIVSEIKSLLARGIFEVNLIGQDLAAYGCGEEDKEFSSE 214

Query: 244 KCTFSDLLY---------------------------SLSEIKGLVRLRYTTSHPRDMSDC 276
           K  + +++Y                            +S ++G   +R    HP   +  
Sbjct: 215 K-NWHEIIYKNLKNPVYAEENFYEKNGDSPLCRLIKKISALEGKFWIRLLYIHPDHFNKD 273

Query: 277 LIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFI 336
           +++   +    +PY  +P QSG ++I+++MNR+ +   Y  +I  IRS  P+  I + F+
Sbjct: 274 ILEVMKNDSRFLPYFDIPFQSGDEKIIRAMNRKGSFENYTSLIKTIRSYFPESCIRTTFL 333

Query: 337 VGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD---ENVKAERLLC 393
            GFPGETD++   T + +  I    +  F YS    T    M  QV       +A RL  
Sbjct: 334 TGFPGETDENASRTEEFLKSIKSDWSGCFPYSREEDTAAYKMKSQVSLKKAKTRAFRLEE 393

Query: 394 LQKKLREQQVSFNDACVGQIIEVLIE-----KHGKEKGKLVGRSPWLQS 437
           +Q ++  + +       G+I +VLIE     K G ++G  +GR+ W  +
Sbjct: 394 MQHEITSESLKMR---CGKIYDVLIEEIIENKDGTDEGLAIGRA-WFDA 438


>gi|288817621|ref|YP_003431968.1| putative 2-methylthioadenine synthetase [Hydrogenobacter
           thermophilus TK-6]
 gi|288787020|dbj|BAI68767.1| putative 2-methylthioadenine synthetase [Hydrogenobacter
           thermophilus TK-6]
 gi|308751219|gb|ADO44702.1| MiaB-like tRNA modifying enzyme YliG [Hydrogenobacter thermophilus
           TK-6]
          Length = 419

 Score =  153 bits (386), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 117/442 (26%), Positives = 211/442 (47%), Gaps = 49/442 (11%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIRE----KAAEKVYSFL 84
           V S GC  N+ D+  +     + G   V+    AD+IV+NTC   E    +A E +  F 
Sbjct: 5   VISLGCAKNLVDTEVLLGKLKAGGATIVSDPRRADVIVINTCGFIEPAKMEAIETILEFA 64

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE-RA 143
           G  +              V+V GC+ Q   EE+ +  P V+   G +++  + E L  R+
Sbjct: 65  GSKK--------------VIVMGCLVQRYKEELKKEIPEVSAYFGTESWDSIVEFLNLRS 110

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
              KR++ T  S                      A+L + EGC++ C+FC +P  RG   
Sbjct: 111 NESKRIITTPSSY---------------------AYLKVSEGCNRLCSFCAIPLIRGRHR 149

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR + +VV+EA+ L D G+ E+ ++ Q+   + GK L   K    +LL +L +++G+  +
Sbjct: 150 SRPIEEVVEEAKYLADQGIKELCIVSQD-TTYYGKDLYA-KPYLVELLKALEKVEGIKWI 207

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R    +P ++ + L+      + ++PY  +P+Q  S  +LKSM R +     R+ ++++R
Sbjct: 208 RLLYLYPTEIDENLLSYMAQSEKVLPYFDVPLQHVSTEVLKSMRRGYDEAFVREFVEKVR 267

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
               +  + + FIVG+P E + D++  +D V +  +    +F Y    GT    + + + 
Sbjct: 268 KNIANAVLRTTFIVGYPLERERDYQKLLDFVREGHFHWVGAFTYYQEEGTHAYALGDPIP 327

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-----KGKLVGRSPWLQSV 438
           +  K ER   L +  R+     N + VG+  E+L++   +E      G++  ++P +  +
Sbjct: 328 QREKEERKEELLRVQRDITYQKNLSLVGKSFELLVDGFDEEFGFVPVGRIYAQAPEVDGI 387

Query: 439 --VLNSKNHNIGDIIKVRITDV 458
             V + K    GD++KV IT V
Sbjct: 388 TYVESDKELKAGDVVKVMITQV 409


>gi|125807910|ref|XP_001360562.1| GA19679 [Drosophila pseudoobscura pseudoobscura]
 gi|121988829|sp|Q291H5|CDKAL_DROPS RecName: Full=CDKAL1-like protein
 gi|54635734|gb|EAL25137.1| GA19679 [Drosophila pseudoobscura pseudoobscura]
          Length = 553

 Score =  153 bits (386), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 131/463 (28%), Positives = 225/463 (48%), Gaps = 42/463 (9%)

Query: 20  QCIVP--QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA 77
           + ++P  Q+ FVK++GC  N  DS  M     + GY +++  D+ADL +LN+C ++  + 
Sbjct: 65  ESVIPGTQKVFVKTWGCAHNNSDSEYMAGQLAAYGY-KLSGKDEADLWLLNSCTVKNPSE 123

Query: 78  EKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQ-AEGEEILRRSPIVNVVVGPQTYYRL 136
           +         RN   S +  G    +VVAGCV Q A   + LR       V+G Q   R+
Sbjct: 124 DT-------FRNEIESGMSNGKH--IVVAGCVPQGAPKSDYLRGL----SVIGVQQIDRV 170

Query: 137 PELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
            E++E    G  V +  +  V  +    + +     RK  +   ++I  GC   CT+C  
Sbjct: 171 VEVVEETLKGHSVRLLQNKKVHGRRVAGAPLSLPKVRKNPLIEIISINTGCLNQCTYCKT 230

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
            + RG   S    ++VD AR+    G CEI L  ++  A+ G+ +     +  +LL+ L 
Sbjct: 231 KHARGDLASYPPEEIVDRARQSFAEGCCEIWLTSEDTGAY-GRDIGS---SLPELLWKLV 286

Query: 256 EI--------KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307
           E+         G+    Y   H  +++  L         +  +LH+PVQSGSD +L  M 
Sbjct: 287 EVIPEHCMLRVGMTNPPYILEHLEEVAKVLQHPR-----VYAFLHVPVQSGSDSVLGEMK 341

Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           R +   ++  ++D +R   P + I++D I GFP ET++DF  TM L  +  +   F  ++
Sbjct: 342 REYCRKDFEHVVDFLRERVPGVTIATDIICGFPTETEEDFEETMTLCGRYRFPSLFINQF 401

Query: 368 SPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDAC--VGQIIEVLIEKHGKEK 425
            PR GTP + M E++  N+  +R     K+L +   S+      VG++  VL+ +   +K
Sbjct: 402 FPRPGTPAAKM-ERIPANLVKKR----TKRLTDLFYSYEPYAQRVGEMYTVLVTEISHDK 456

Query: 426 GKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
              VG +   + V+L  +++ +G  + VRIT V   ++ GE++
Sbjct: 457 LHYVGHNKSYEQVLLPMRDNLLGTRVHVRITSVSKFSMVGEIL 499


>gi|294012737|ref|YP_003546197.1| MiaB-like enzyme [Sphingobium japonicum UT26S]
 gi|292676067|dbj|BAI97585.1| MiaB-like enzyme [Sphingobium japonicum UT26S]
          Length = 442

 Score =  153 bits (386), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 120/414 (28%), Positives = 190/414 (45%), Gaps = 42/414 (10%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N+ +S  + +M   +           DLIV+N+C +  +A  +    + R R  
Sbjct: 8   TLGCRLNIAESEAIREMAGGRD----------DLIVVNSCAVTAEAVRQTRQAIRRARRD 57

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG------PQTYYRLPELLERAR 144
           +           ++V GC AQ E E     +  V+ V+G         Y      L    
Sbjct: 58  RPD-------ARIMVTGCAAQTEPETFAAMAE-VDAVIGNREKMDASHYTSSQRRLGSQA 109

Query: 145 FGKRV---VDTDYSVEDKF---ERLSIVDGGYNRKRG----------VTAFLTIQEGCDK 188
            G  V   +     + D+    ER+ + D    R+              AFL +Q GCD 
Sbjct: 110 IGHGVGPGIPAFAGMTDEMGTAERVKVSDIMSVRETAPHMASAFAEHARAFLEVQNGCDH 169

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS 248
            CTFC++PY RG   S     V+D+AR+L+D G  EI L G +V ++ G  L G      
Sbjct: 170 RCTFCIIPYGRGNSRSVPAGAVIDKARELVDAGYREIVLTGVDVTSY-GPDLPGAPSLGL 228

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
            +   L  +  L RLR ++    ++ + L         +MP+LHL +Q+G D ILK M R
Sbjct: 229 LIERLLKGVPDLPRLRLSSLDSVEIDERLFDLIAHEPRMMPHLHLSLQAGDDMILKRMKR 288

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
           RH   +  +I++R+++ RP I+I +D I GFP E +  F  ++ LV++        F YS
Sbjct: 289 RHGRADAVRIVERLKAARPGISIGADIIAGFPTEDEAMFENSLRLVEECAIVHGHIFPYS 348

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422
           PR GTP + M  QVD      R   L+     Q+  +  + +G    VL+E++G
Sbjct: 349 PRAGTPAARM-PQVDRAAVKARAARLRSACEAQREGWLRSLIGSTQSVLVERNG 401


>gi|195953930|ref|YP_002122220.1| MiaB-like tRNA modifying enzyme [Hydrogenobaculum sp. Y04AAS1]
 gi|195933542|gb|ACG58242.1| MiaB-like tRNA modifying enzyme [Hydrogenobaculum sp. Y04AAS1]
          Length = 411

 Score =  152 bits (385), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 122/442 (27%), Positives = 198/442 (44%), Gaps = 44/442 (9%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +F V + GC+MN +D   +       GYE+    +  D+ ++NTC +  +A       + 
Sbjct: 2   KFKVINLGCRMNQFDGDFISSWLLKHGYEK---SEIPDIYIINTCSVTSQADRSSRQAIY 58

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           + +       KE  + +V+  GC AQ + +E L +   V++V+G      + E +     
Sbjct: 59  QAK-------KENPNAIVIATGCYAQTQ-KEALEKIKEVDIVLGNANRTDILEAI----- 105

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRK----------RGVTAFLTIQEGCDKFCTFCVV 195
            K  +DT        ++LS VD  + +                FL IQEGC+ FC+FC++
Sbjct: 106 -KNHLDTK-------QKLSHVDNIFRQNDIAFQEDIIFENHRPFLKIQEGCNSFCSFCII 157

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-RGKGLDGEKCTFSDLLYSL 254
           P+ RG   S     ++   + L + G  E+ L G  ++ + + KG      +   LL  L
Sbjct: 158 PFARGKSRSVDEELIIKSVQNLYEKGYKEVVLTGTQLSQYGQDKG-----TSLYKLLKKL 212

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
            +I   +RL     +       L+    +   +MP+ HL +QS SD++LK+M R +T  E
Sbjct: 213 LKIPMFIRLSSMNVNEIKTDKELLDLITEEPNIMPHFHLSLQSASDKLLKAMRREYTLKE 272

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
           Y +++  I   RP  AI +D IVGFP E  +DF  T   +    +A    F YS R  T 
Sbjct: 273 YEEVVSYIIKKRPISAIGTDIIVGFPTENHEDFNITYIFLKDFPFAYLHIFTYSDRPLTK 332

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPW 434
              +  +VD N K ER   L    +E++  F  +  G+ +  +   H K    L      
Sbjct: 333 AQKLTPKVDSNTKKERSKLLHNLDQEKREHFRASMKGKTLRAVTISHDK---ALTENYIE 389

Query: 435 LQSVVLN-SKNHNIGDIIKVRI 455
           L    LN  K   I DII +R+
Sbjct: 390 LTPKDLNIDKFEKINDIIMIRL 411


>gi|119384742|ref|YP_915798.1| MiaB-like tRNA modifying enzyme YliG [Paracoccus denitrificans
           PD1222]
 gi|238066602|sp|A1B3K8|RIMO_PARDP RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|119374509|gb|ABL70102.1| SSU ribosomal protein S12P methylthiotransferase [Paracoccus
           denitrificans PD1222]
          Length = 463

 Score =  152 bits (385), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 120/399 (30%), Positives = 189/399 (47%), Gaps = 34/399 (8%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC   + DS R+     ++GY        A  +++NTC   + A  +    +G     
Sbjct: 36  SLGCPKALVDSERILTRLRAEGYAISPDYKGAGAVIVNTCGFLDSAKAESLQAIGEA--- 92

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               + E G   V+V GC+  AE E I    P V  V GPQ Y ++ + +  A       
Sbjct: 93  ----LAENGK--VIVTGCLG-AEPEYITGAHPSVLAVTGPQQYEQVLDAVHHAV------ 139

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
                  D F  L    G     R  + +L I EGC+  C FC++P  RG  +SR    V
Sbjct: 140 ---PPSPDPFVDLLPASGVKLTPRHYS-YLKISEGCNHACKFCIIPDMRGKLVSRPAHAV 195

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLD-------GEKCTFSDLLYSLSEIKGLVRL 263
           + EA KL++ GV E+ ++ Q+ +A+   GLD       G +   +DL   L ++   VRL
Sbjct: 196 IREAEKLVEAGVRELLVISQDTSAY---GLDRKFATERGHRAHITDLARDLGQLGAWVRL 252

Query: 264 RYTTSHP--RDMSDCLIKAHGDLD-VLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            Y   +P  RD+   L+ AHG+   +++PYL +P Q     +LK M R   A      I 
Sbjct: 253 HYVYPYPHVRDLIP-LMAAHGESGGLVLPYLDIPFQHAHPDVLKRMARPAAAARTLDEIA 311

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
             R+V PDI + S FIVG+PGET+ +F+  +D +D+    +   F+Y    G   +++ +
Sbjct: 312 AWRAVCPDITLRSTFIVGYPGETEAEFQTLLDWLDEAQLDRVGCFQYENVKGARANDLPD 371

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419
            V ++VK +R     +K +    +   A VG  IEV+++
Sbjct: 372 HVPDDVKQDRWDRFMQKAQAISEAKLAAKVGHRIEVIVD 410


>gi|188582088|ref|YP_001925533.1| MiaB-like tRNA modifying enzyme [Methylobacterium populi BJ001]
 gi|179345586|gb|ACB80998.1| MiaB-like tRNA modifying enzyme [Methylobacterium populi BJ001]
          Length = 410

 Score =  152 bits (385), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 105/349 (30%), Positives = 171/349 (48%), Gaps = 26/349 (7%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           ++GC++N  +S         +G+    + +  DL+V+NTC +  +A  +    + R+   
Sbjct: 7   TFGCRLNTVES------EVVRGHAEAGA-EGRDLVVVNTCAVTAEAGRQARKAIRRL--- 56

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
             +R + G +  +VV GC A+ E        P V  +VG     R        R G    
Sbjct: 57  --ARERPGAE--IVVTGCGAEVERAHYAD-MPEVARLVGNAAKLRPGSW----RSGAVPP 107

Query: 151 DTDYSVEDKFERLSIVD-GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209
             D       E   I+   G+ R     AF+ +Q GCD  CTFCV+P+ RG   S  +++
Sbjct: 108 PEDIMAVRTAEPTRILGMSGHTR-----AFVPVQNGCDHRCTFCVIPFGRGHSRSVPVAE 162

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSH 269
            V + R+++++G  E+ L G ++ A+ G+ L  +      +   LSE+  L RLR ++  
Sbjct: 163 AVAQVRRIVEHGGREVVLTGVDLTAY-GRDLASDLSLGRLVRTILSEVPDLARLRLSSID 221

Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329
             +    LI A  +   LMP++HL +Q+G D ILK M RRH   +  ++   +R +RP +
Sbjct: 222 SVEADPELIAAFAEESRLMPHVHLSLQAGDDLILKRMKRRHARADAIRLCRTLRDLRPGL 281

Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
              +D I GFP ET+  F  ++DLV++        F YSPR GTP + M
Sbjct: 282 VFGADLIAGFPTETEAQFARSLDLVEECELTHLHVFPYSPRPGTPAARM 330


>gi|91974995|ref|YP_567654.1| MiaB-like tRNA modifying enzyme [Rhodopseudomonas palustris BisB5]
 gi|91681451|gb|ABE37753.1| MiaB-like tRNA modifying enzyme [Rhodopseudomonas palustris BisB5]
          Length = 443

 Score =  152 bits (385), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 128/416 (30%), Positives = 187/416 (44%), Gaps = 60/416 (14%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           + ++GC++N ++S  +       G          D IV+N+C +  +A  +      +IR
Sbjct: 5   IVTFGCRLNAFESEVIRREAEGAGLH--------DAIVINSCAVTNEAVAQARQ---QIR 53

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
            LK  R        +VV GC AQ E          V+ V+G     R     E  R  + 
Sbjct: 54  KLKRERPGA----RIVVTGCAAQTEPATFAGMDE-VDRVIGNDDKMRS----EAWRAARI 104

Query: 149 VVDTDYS----VEDKFERLSI----------VDG---GYNRKRGVTAFLTIQEGCDKFCT 191
             D D +     E K     I          VDG   G  R      F+ +Q GCD  CT
Sbjct: 105 AFDADTAFGLGAEQKIAVADIMAVREMAPHLVDGYQSGLPR-----VFVQVQNGCDHRCT 159

Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLL 251
           FC++P+ RG   S  +  VVD+ R L + G  EI L G ++ ++ G  L G     + + 
Sbjct: 160 FCIIPFGRGNSRSVPIGAVVDQVRALTERGHAEIVLTGVDLTSY-GADLPGTPKLGALVK 218

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
             L  +  L RLR ++    +    L+ A      LMP+LHL +Q+G D ILK M RRH 
Sbjct: 219 KVLRHVPELQRLRISSIDSIEADRDLLDALAGEQRLMPHLHLSLQAGDDLILKRMKRRHL 278

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
             +     + +R +RPDIA+ +D I GFP ET+  FR ++DLVD  G      F YS R 
Sbjct: 279 RDDAIAFCEEVRRLRPDIALGADLIAGFPTETEAMFRRSLDLVDDCGLTFLHVFPYSKRP 338

Query: 372 GTPGSNMLEQVDENV--------KAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419
           GTP + M  Q+D  +        +A     LQ++L+ +        +GQ   VLIE
Sbjct: 339 GTPAARM-PQLDGRIIRERAARLRAAGEAALQRRLQAE--------IGQTRAVLIE 385


>gi|318061015|ref|ZP_07979736.1| hypothetical protein SSA3_23925 [Streptomyces sp. SA3_actG]
          Length = 499

 Score =  152 bits (385), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 127/460 (27%), Positives = 196/460 (42%), Gaps = 62/460 (13%)

Query: 23  VPQRFFVK--SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKV 80
           +P+R  V   + GC  N  DS  +     + G++ V     AD+ V+NTC   E A +  
Sbjct: 1   MPERRTVALVTLGCARNEVDSEELAGRLEADGWDLVEDASHADVAVVNTCGFVEAAKKDS 60

Query: 81  YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYY------ 134
              L    +LK      G    VV  GC+A+  G+++    P  + V+G   Y       
Sbjct: 61  VDALLEANDLKG----HGRTQAVVAVGCMAERYGKDLAEALPEADGVLGFDDYADISDRL 116

Query: 135 ----------------------------------RLPELLERARFGKRVVDTDYSVEDKF 160
                                              LP   ++A   + V  TD  + D  
Sbjct: 117 QTILSGGIHASHTPRDRRKLLPLSPAARQDAPGVALPGHAQQAPEPEDVAPTD--LPDGL 174

Query: 161 ERLSIVDGGYNRKRGVTAFLTIQ--EGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLI 218
              S       R+ G +   +++   GCD+ C+FC +P  RG  ISR  S V+ E R L 
Sbjct: 175 APASGPRAPLRRRLGTSPVASVKLASGCDRRCSFCAIPSFRGSFISRRPSDVLTETRWLA 234

Query: 219 DNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLI 278
           + GV E+ L+ +N N   GK L G+      LL  L+ + G+ R+R +   P +M   LI
Sbjct: 235 EQGVREVMLVSEN-NTSYGKDL-GDIRLLETLLPELAAVDGIERVRVSYLQPAEMRPGLI 292

Query: 279 KAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVG 338
                   + PY  L  Q  +  +L++M R      +  ++D+IR+  P+  + S+FIVG
Sbjct: 293 DVLTSTPKIAPYFDLSFQHSAAGVLRAMRRFGGTDSFLGLLDQIRAKAPEAGVRSNFIVG 352

Query: 339 FPGETDDDFRA-----TMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLC 393
           FPGET++D        T   +D IG      F YS   GT  +    ++DE V AERL  
Sbjct: 353 FPGETEEDVAELERFLTSARLDAIGV-----FGYSDEEGTEAATYATKLDEEVVAERLAR 407

Query: 394 LQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSP 433
           + +   E      +  +G+ +EVL+E    E    +GR P
Sbjct: 408 VSRLAEELTAQRAEERIGETMEVLVESAATEDEPALGRGP 447


>gi|88802666|ref|ZP_01118193.1| putative Fe-S oxidoreductase [Polaribacter irgensii 23-P]
 gi|88781524|gb|EAR12702.1| putative Fe-S oxidoreductase [Polaribacter irgensii 23-P]
          Length = 450

 Score =  152 bits (385), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 129/462 (27%), Positives = 230/462 (49%), Gaps = 42/462 (9%)

Query: 20  QCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNS--MDDADLIVLNTCHIREKAA 77
           + I   +  V + GC  N+YDS  +     + G   V+    DD +++V+NTC    KA 
Sbjct: 4   KTIKKNKINVVTLGCSKNIYDSEVLMGQLKANGKNVVHEDPEDDGNIVVINTCGFIGKAK 63

Query: 78  EKVYSFLGRIRNLKNSRIKEGGDL-LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL 136
           E+    +     L  ++ KE G++  V V+GC+++    ++ +  P V+   G    + L
Sbjct: 64  EESIDTI-----LHYAKRKEAGEIDKVFVSGCLSERYKPDLEKEIPNVDQYFGT---HDL 115

Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
           P LL       +V++ DY  E   ERL+     Y       A+L I EGCD+ C+FC +P
Sbjct: 116 PNLL-------KVLEADYKHELIGERLTTTPKHY-------AYLKIAEGCDRPCSFCAIP 161

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLS 255
             RG  +S  +  +V EA KL + G+ E+ L+ Q++  +   GLD  +K   ++LL +L+
Sbjct: 162 LMRGKHVSTPIEDIVTEATKLAEKGIKEVMLIAQDLTYY---GLDIYKKRALAELLEALA 218

Query: 256 EIKGL--VRLRYT--TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
            + G+  +R+ Y   T  P D+ + + +       +  YL +P+Q  +  +LKSM R  T
Sbjct: 219 RVDGIEWIRMHYAFPTGFPMDVLEVMKREPK----VCNYLDIPLQHINTELLKSMKRGTT 274

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
             +   +I + R+  P +AI +  IVG+PGET+  F+   D V+++ + +  +F+YS   
Sbjct: 275 HEKTTALIHKFRTAVPKMAIRTTLIVGYPGETEVMFQELKDWVEEMRFERLGAFEYSHEE 334

Query: 372 GTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE--KGKLV 429
            T    + + V   VK +R+  + +   +     N A +G+    L ++   E   G+  
Sbjct: 335 NTGAYVLEDDVPAEVKFKRVNEIMELQSQISWELNQAKIGKTFRCLFDRKDGEYFYGRTE 394

Query: 430 GRSPWLQS-VVLNSKNH--NIGDIIKVRITDVKISTLYGELV 468
             SP + + V+++++ H   IG+ I ++I +     LYG  V
Sbjct: 395 SDSPDVDNDVLVDAREHYVKIGEFIDIKIHEAGDYDLYGTPV 436


>gi|260893774|ref|YP_003239871.1| MiaB-like tRNA modifying enzyme YliG [Ammonifex degensii KC4]
 gi|260865915|gb|ACX53021.1| MiaB-like tRNA modifying enzyme YliG [Ammonifex degensii KC4]
          Length = 436

 Score =  152 bits (385), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 129/448 (28%), Positives = 210/448 (46%), Gaps = 31/448 (6%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N  D+  M  +    G+     +  A +I++NTC   E A  +       +  L
Sbjct: 7   SLGCPKNRVDTETMLGLLREAGFSPTLDLSSAQVILVNTCAFIEPAQREAV-----VTIL 61

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
           + ++ K+ G +L+V  GC+ +  G  +L   P ++ ++G     R+   +  A  G+R V
Sbjct: 62  ELAQQKKKGQVLLVT-GCLVELFGSSLLEEMPEIDGLIGTGALDRVVSAVGEALEGRRPV 120

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVT---AFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
              Y     F     +  G  R        A+L I EGC   C+FC +PY RG   SR  
Sbjct: 121 ---YLAPPGF-----LGNGTPRLLSTPSYYAYLKIAEGCSHRCSFCRIPYLRGPYRSRPP 172

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
            +++ EA +L + GV E+ L+ Q+  +W G  L G       L    +  K +  +R   
Sbjct: 173 EEILREAAELAERGVKELILVAQDTTSW-GIDLYGRPSLALLLRELAALEK-VKWIRILY 230

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
           +HP  ++D L++     D +  YL LP+Q  S RILK M R     +  +++ RIR   P
Sbjct: 231 AHPASITDELLEVMAKEDKICRYLDLPLQHLSPRILKRMGR--PLIDPHRLVQRIRKALP 288

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD---E 384
            + + + FIVGFPGE  +DF   +  V ++G+ +   F Y    GTP +++ EQV    +
Sbjct: 289 GVVLRTTFIVGFPGEEKEDFALLLRGVRELGFERIGIFPYYREEGTPAASLPEQVPEEEK 348

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGK-EKGKLVGRSPWLQSVVL-- 440
             +  RL  L +KL   ++      VG+ I VL+E + GK  +G+  G +P +   V   
Sbjct: 349 RRRYRRLAFLARKLSRWRLR---RLVGKEITVLVEGEKGKFYRGRSEGDAPEIDGWVYLR 405

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
             K    GD +  R+T  +   L  E++
Sbjct: 406 TDKPLQPGDFVHARVTKARTYDLEAEVL 433


>gi|150002616|ref|YP_001297360.1| putative Fe-S oxidoreductase [Bacteroides vulgatus ATCC 8482]
 gi|254881421|ref|ZP_05254131.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|294777900|ref|ZP_06743343.1| MiaB-like protein [Bacteroides vulgatus PC510]
 gi|319642808|ref|ZP_07997446.1| Fe-S oxidoreductase [Bacteroides sp. 3_1_40A]
 gi|149931040|gb|ABR37738.1| putative Fe-S oxidoreductase [Bacteroides vulgatus ATCC 8482]
 gi|254834214|gb|EET14523.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|294448253|gb|EFG16810.1| MiaB-like protein [Bacteroides vulgatus PC510]
 gi|317385552|gb|EFV66493.1| Fe-S oxidoreductase [Bacteroides sp. 3_1_40A]
          Length = 438

 Score =  152 bits (384), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 112/396 (28%), Positives = 194/396 (48%), Gaps = 28/396 (7%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N  ++  +       G       + AD+ V+NTC + E A +K    + R+   
Sbjct: 16  TLGCKLNFSETSTIGKTLKEAGIRTARKGEKADICVINTCSVTEVADKKCRQAIHRL--- 72

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL---ERARFGK 147
               +K+     VVV GC AQ + +++      V+VV+G +    L   L   E+   G+
Sbjct: 73  ----VKQHPGAYVVVTGCYAQLKPDQVANIEG-VDVVLGAEQKGELMNYLGNLEKHPQGE 127

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
            +      +       S  D    R R    FL +Q+GCD FC++C +P+ RG   +  +
Sbjct: 128 AITTAAKDIRSFSPSCSRGD----RTR---YFLKVQDGCDYFCSYCTIPFARGRSRNGRI 180

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
            ++V++AR+    G  EI + G N+  + GK   GE  +F DL+ +L ++ G+ R R ++
Sbjct: 181 EEIVEQARQAAAEGGKEIVITGVNIGDF-GK-TTGE--SFFDLVKALDQVAGIERYRISS 236

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
             P  ++D +I+        MP+ H+P+QSGSD +LK M RR+    +   I +I+ + P
Sbjct: 237 IEPNLLTDEIIEYVSRSRAFMPHFHIPLQSGSDDVLKLMRRRYDTALFASKIRKIKEIMP 296

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG---SNMLEQVDE 384
           D  I  D IVG  GET++ F      ++ +   Q   F YS R GT       ++   ++
Sbjct: 297 DAFIGVDVIVGTRGETEEYFEDAYRFIEGLDVTQLHVFSYSERPGTQALKIEYVVSPEEK 356

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
           + +++RLL L      +  +F  + +G+   VL+EK
Sbjct: 357 HRRSQRLLALSDA---KTKAFYTSHIGREAWVLMEK 389


>gi|114328163|ref|YP_745320.1| tRNA 2-methylthioadenosine synthase-like protein [Granulibacter
           bethesdensis CGDNIH1]
 gi|114316337|gb|ABI62397.1| tRNA 2-methylthioadenosine synthase-like protein [Granulibacter
           bethesdensis CGDNIH1]
          Length = 434

 Score =  152 bits (384), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 107/354 (30%), Positives = 168/354 (47%), Gaps = 35/354 (9%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           + ++GC++N Y+S  M          R ++   +D I++NTC +  +A  +    + R  
Sbjct: 27  ILTFGCRLNSYESEVM----------RGHAAALSDTIIVNTCAVTGEAERQARQAIRRAH 76

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
                  +E  +  +VV GC AQ +        P V  V+G +   + PE          
Sbjct: 77  -------RERPEAQIVVTGCAAQLDPAR-WAALPGVTRVLGNEDKLK-PE--------SW 119

Query: 149 VVDTDYSVED----KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
             D   ++ D    K     +V     R R   AF+ +Q+GCD  CTFC++P+ RG   S
Sbjct: 120 APDAPSAISDIMQAKETAAHLVTEFAGRAR---AFVQVQQGCDHRCTFCIIPFGRGPSRS 176

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
             +  +VD+ R L+  G  E+ L G ++ ++ G  L G       +   L+ +  L RLR
Sbjct: 177 VPIGAIVDQVRLLVQRGYQEVVLTGVDITSY-GPDLPGAPGLGQMMRRLLALVPELPRLR 235

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
            ++  P ++ + L     +   LMP+LHL +Q+GSD ILK M RRH+     + + R R 
Sbjct: 236 LSSLDPEEIDEDLWHLIAEEPRLMPHLHLSLQAGSDMILKRMKRRHSRAGALETVARARR 295

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           +RP IAI +D I GFP ET+  F  T+  V +        F YS R GTP + M
Sbjct: 296 LRPGIAIGADVIAGFPTETEALFEETLAFVREAQLPFLHVFPYSERPGTPAARM 349


>gi|85714448|ref|ZP_01045436.1| 2-methylthioadenine synthetase [Nitrobacter sp. Nb-311A]
 gi|85698895|gb|EAQ36764.1| 2-methylthioadenine synthetase [Nitrobacter sp. Nb-311A]
          Length = 422

 Score =  152 bits (384), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 107/372 (28%), Positives = 178/372 (47%), Gaps = 36/372 (9%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V ++GC++N ++S  +     + G +        +++++N+C +  +A  +    + R+R
Sbjct: 5   VVTFGCRLNAFESEVIRRNAEAAGLD--------EIVIINSCAVTNEAVAQTRQSIRRLR 56

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG-- 146
                  +E     +VV GC AQ E   +  +   V+ V+G     R             
Sbjct: 57  -------RERPSARIVVTGCAAQIE-PAMFAQMAEVDRVIGNDDKMRGDAWRAARAAFAG 108

Query: 147 --------KRVVDTDYSVEDKFERLSIVDG---GYNRKRGVTAFLTIQEGCDKFCTFCVV 195
                   K++  TD     +     +VDG   G  R     AF+ +Q GCD  CTFC++
Sbjct: 109 SDVAIPAEKKIAVTDIMAVTEMAP-HLVDGFRGGLPR-----AFVQVQNGCDHRCTFCII 162

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
           P+ RG   S  ++ +VD+ R L++ G  E+ L G ++ ++ G  L G       +   L 
Sbjct: 163 PFGRGNSRSAPMNVIVDQVRALVEAGHVEVVLTGVDLTSY-GADLPGRPRLGGLVKQILQ 221

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
            +  + RLR ++    +    L+ A  + + LMP+LHL +QSG D ILK M RRH+  E 
Sbjct: 222 RVPEMTRLRISSIDSIEADRDLLDAVANEERLMPHLHLSLQSGDDIILKRMKRRHSRREA 281

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
            +   ++R +RPD+A+ +D I GFP ETDD F  ++DLV +        F YS R GTP 
Sbjct: 282 IEFCAQVRRLRPDVALGADIIAGFPTETDDMFARSLDLVAECDLTFLHVFPYSLRPGTPA 341

Query: 376 SNMLEQVDENVK 387
           + M     E ++
Sbjct: 342 ARMPPVAAEVIR 353


>gi|256830728|ref|YP_003159456.1| MiaB-like tRNA modifying protein YliG [Desulfomicrobium baculatum
           DSM 4028]
 gi|256579904|gb|ACU91040.1| MiaB-like tRNA modifying enzyme YliG [Desulfomicrobium baculatum
           DSM 4028]
          Length = 441

 Score =  152 bits (384), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 125/458 (27%), Positives = 216/458 (47%), Gaps = 45/458 (9%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKA-AEKVYS 82
           R    S GC  N  D+   E M    G   VN+ +  DAD++++NTC   E A +E +  
Sbjct: 5   RIHTISLGCPKNQVDT---EWMLGGFGASFVNAAEPEDADVVLINTCGFIEPAVSESLQV 61

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            L   + L     +      +VV GC+    G+++    P V++ +         E+  +
Sbjct: 62  ILDMAQRLAELSPRPS----LVVTGCLVSRYGQDLRCELPEVDLFL---------EIGRQ 108

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT-----AFLTIQEGCDKFCTFCVVPY 197
              G+R+ +     ED    L    GG++  R +T     A+L I EGCD  C FC +P 
Sbjct: 109 NELGQRLRELAELREDARPGLEAALGGFSAARLLTTPQSFAYLKIAEGCDNRCRFCTIPS 168

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257
            RG  +SR  + ++D+AR+ +  G  E+ L+ Q+V A+   G D  +     LL  L+ +
Sbjct: 169 IRGPLVSRDEAGILDDARRCLAQGRKELVLIAQDVTAY---GRDRGQKALRGLLEKLAPL 225

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLD-VLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
            GL  +R    +P  +   L++   DL    +PY  +P+Q     IL SM R     + R
Sbjct: 226 NGLEWMRLMYLYPAGLDGDLLRFLADLGRPFIPYFDIPLQHAHPDILASMGRPFQ-RDPR 284

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
            +++++R   P+ A+ + FIVG+PGET+  FRA    V +  +     F Y    G+  +
Sbjct: 285 AVVEQVRKFFPEAALRTTFIVGYPGETEARFRALESFVREARFMHLGVFPYYAEDGSEAA 344

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACV----GQIIEVLIEK-HGKEKGKLVGR 431
            + +Q+ + VK ER    + ++ E Q   +   +    GQ ++VL+++ H +  G   GR
Sbjct: 345 ILPDQLPDEVKEER----RDRIMEMQADISADLLAGFEGQELDVLVDRAHEEWPGLYEGR 400

Query: 432 SPWLQS------VVLNSKNHNIGDIIKVRITDVKISTL 463
           + W Q+        ++ ++   G +++  I +VK   L
Sbjct: 401 T-WFQAPEVDGITYVSGESVMPGKMVRAVIEEVKTYDL 437


>gi|330506789|ref|YP_004383217.1| hypothetical protein MCON_0563 [Methanosaeta concilii GP-6]
 gi|328927597|gb|AEB67399.1| conserved hypothetical protein [Methanosaeta concilii GP-6]
          Length = 437

 Score =  152 bits (384), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 125/456 (27%), Positives = 224/456 (49%), Gaps = 36/456 (7%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           RF+++++GC  N  +S  + +     G+   + + +AD++++NTC + E+   K+   L 
Sbjct: 2   RFYIETFGCTSNFGNSQDLAEALREMGH-IPSGLKEADMVIVNTCAVTERTERKI---LR 57

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEIL------RRSPI----VNVVVGPQTYYR 135
           R+R L+  R+        VVAGC+A A  + I       R  P+       + G    + 
Sbjct: 58  RLRQLEGERL--------VVAGCLAAAIPQSIQTLCCRGRLGPLSQGDAARIAGLFDGWL 109

Query: 136 LPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT-AFLTIQEGCDKFCTFCV 194
           +P   +  + G+       S E   ER   V    +   G +   + + +GC+  C++C+
Sbjct: 110 MPS--QHMQSGQLQSQNFQSEEMLRERHIAVHLRESSPGGESCGIVNVADGCNGSCSYCI 167

Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL 254
           V   RG   SR +  VV    +L   G  EI +  Q+  A+ G  +  +    + LL +L
Sbjct: 168 VSKARGRLKSRPVEDVVLAVERLAQLGTAEIQISAQDTAAF-GSDIGSD---LAGLLETL 223

Query: 255 SEIKGLVRLRYTTSHP---RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
           +EI G   LR    +P   R + + LI+A     +   +LH+PVQSGSD IL+ M R +T
Sbjct: 224 TEIPGDFMLRVGMMNPDSARLIQNRLIEAFQSPKIYR-FLHIPVQSGSDEILQRMGRVYT 282

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
           + E+ +++   R   PDI+I +D IVGFPGETD DF  +M L++++   +    ++SPR 
Sbjct: 283 SDEFFELVSAFRFAYPDISIITDIIVGFPGETDKDFEESMSLIERLQPDKVNITRFSPRP 342

Query: 372 GTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR 431
           GT  +++ +  D  +K +R   + +   E     N   +G+++  L+ + G++K  +  R
Sbjct: 343 GTSAASLYDMPD-RIKKDRSREMTRLWLEIAERRNRRYLGKVLHALVTECGRDK-TMKAR 400

Query: 432 SPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
           S     +V+     ++G   +++I +     L G L
Sbjct: 401 SANYAGIVIPGA-LDLGRWCQIKIMETTPYYLSGIL 435


>gi|189485173|ref|YP_001956114.1| hypothetical protein TGRD_170 [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
 gi|238055294|sp|B1GZH1|RIMO_UNCTG RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|170287132|dbj|BAG13653.1| conserved hypothetical protein [uncultured Termite group 1
           bacterium phylotype Rs-D17]
          Length = 439

 Score =  152 bits (384), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 114/442 (25%), Positives = 205/442 (46%), Gaps = 26/442 (5%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           Q   V + GC  N  ++  +  +F  +G++  +++D AD++V++TC   + A  +    +
Sbjct: 7   QTIAVIALGCPKNTVEAEYLLGIFQEKGFKISSNLDKADIVVIHTCSFIKAAKAESEKCI 66

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             I ++K  +      L V V+GC+ Q   E++    P ++   G  T   LP+L+    
Sbjct: 67  RTILDIKKKK-----SLRVYVSGCLPQLLKEKMSVLFPDIDGFAGTGTLQYLPDLVFGKN 121

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
           FG+ ++      +  +  LS            +A+L I EGC   C+FC++P  RG   S
Sbjct: 122 FGRFILPPGGLNDSNYRVLS--------STIPSAYLKIAEGCGHVCSFCIIPALRGRYES 173

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R++  +VDE   L ++G+ E+ L+ Q+   + GK + G       LL  LS+I GL  +R
Sbjct: 174 RTMESLVDEVAALAESGIKELILIAQDTTGY-GKDIYGA-FVLDKLLVKLSKINGLKWIR 231

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
              ++P  ++D LI+   +   +  Y+ +P+Q  S  +L +M R         II++I+ 
Sbjct: 232 LLYAYPSSITDGLIEVFKEHKKICSYMDIPIQHASKNVLSAMKR---PLNTPGIIEKIKR 288

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             PDI + +  I GFPGET  D    ++ +++  +  A  F+YS       S +   V  
Sbjct: 289 KLPDIVLRTSIIAGFPGETKKDVNELINFLNRGYFQYAGVFEYSDLKEAVSSKLKRHVRA 348

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE------KGKLVGRSPWLQSV 438
               ER + ++        +  D      IE L+E   K+      KG+   +SP +   
Sbjct: 349 AAAKERKIMIENAQYNIFQAKIDKIKNNTIEFLVESCLKKGNVYSIKGRSSFQSPEIDGN 408

Query: 439 VL--NSKNHNIGDIIKVRITDV 458
           ++  N K   +G   K ++  V
Sbjct: 409 IILENDKPLTVGGFCKAKVRSV 430


>gi|78188689|ref|YP_379027.1| hypothetical protein Cag_0713 [Chlorobium chlorochromatii CaD3]
 gi|123770879|sp|Q3ASP1|RIMO_CHLCH RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|78170888|gb|ABB27984.1| SSU ribosomal protein S12P methylthiotransferase [Chlorobium
           chlorochromatii CaD3]
          Length = 438

 Score =  152 bits (384), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 131/454 (28%), Positives = 215/454 (47%), Gaps = 43/454 (9%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA-EKVYSFLG 85
            F+ S GC  N  DS R+     +     V  +D+AD I++NTC   E A  E +   L 
Sbjct: 6   LFLLSLGCSKNTVDSERLLAQAAAAAIRSVERVDEADTILINTCAFIEDAKKESIEEMLA 65

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +   +   +K+     V V GC+ +    E+    P V+   G +    LP++L  A  
Sbjct: 66  ALDKKREGVVKQ-----VFVMGCLPELYRRELQEELPEVDAFFGTR---ELPQIL--ASL 115

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G R     Y  E   ERL +    Y       A+L I EGC++ C+FC +P  RG   S+
Sbjct: 116 GAR-----YRSELFDERLLLTPSHY-------AYLKISEGCNRICSFCSIPKIRGRYQSQ 163

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL-VRLR 264
            L Q++ EA +L   GV E+ L+ Q+++ + G    G     ++LL  LS++  L +RL 
Sbjct: 164 PLEQLLREATRLQQQGVQELNLIAQDISLF-GYDTTGHS-QLNELLLRLSDMDFLWIRLL 221

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           Y  ++P +    +I    D   +  YL +P+Q  +DRIL++M R  T  +  +++  +R 
Sbjct: 222 Y--AYPVNFPLEVIDTMRDRSNICNYLDIPLQHCNDRILRAMKRGVTKADTIRLLHEMRQ 279

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             P+I + +  +VGFPGET  +F   +D V++  + +   F Y+     P + + + +  
Sbjct: 280 RNPNIRLRTTMLVGFPGETRAEFEELLDFVEEQRFDRLGCFPYNHEEHAPSAMLEDLLSI 339

Query: 385 NVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
             K ER   L+ LQ+ + E   S N    G+ IEV+++   +E      RS +    V N
Sbjct: 340 EEKEERVSELMELQEAVAE---SLNREFEGKEIEVVVDSFVEEMA--FCRSEYDAPEVDN 394

Query: 442 -------SKNHNIGDIIKVRITDVKISTLYGELV 468
                  ++N   G+  +  I D     LYGE+V
Sbjct: 395 ECLLTFGAQNIQAGNFYRALINDSSAHELYGEIV 428


>gi|257439153|ref|ZP_05614908.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Faecalibacterium
           prausnitzii A2-165]
 gi|257198404|gb|EEU96688.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Faecalibacterium
           prausnitzii A2-165]
          Length = 409

 Score =  152 bits (384), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 117/415 (28%), Positives = 199/415 (47%), Gaps = 21/415 (5%)

Query: 47  MFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVA 106
           MF   G+  V   ++AD+ V+N+C +     +K   +L R +       +E    + V+ 
Sbjct: 1   MFRGAGFTIVPEGEEADVFVVNSCTVTNFGDQKSRKWLRRAK-------RENPGAVTVLT 53

Query: 107 GCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVD-TDYSVEDKFERLSI 165
           GC  QA  EE  +      V         L  +L+     +R+V  T +   + FE L +
Sbjct: 54  GCYPQAFPEEAAQFMEADLVCGNGDRKAILDNVLKLLDGHERIVAVTPHQRGELFEELPV 113

Query: 166 VDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEI 225
                + +    AF+ +++GC++ C +CV+P  RG   SR+   ++ E R+L  +G  E+
Sbjct: 114 ERFETHTR----AFIKVEDGCNRQCAYCVIPRARGPVRSRAEDSILKELRQLAASGYREV 169

Query: 226 TLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLD 285
            L   ++ ++   GLD       +L+   ++++G+ R+R  +  P  ++   I     ++
Sbjct: 170 VLSAISLPSY---GLD-TGTNLVELVEKCAQVEGIERIRLGSLDPDMLTPEFITRLAAVE 225

Query: 286 VLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV---RPDIAISSDFIVGFPGE 342
            L P  HL +QSG    L+ M R +TA +Y Q++D+IR+    RP ++ ++D I GFPGE
Sbjct: 226 KLCPQFHLSLQSGCTSTLRRMRRVYTAEQYAQVVDQIRAAYGERP-VSFTTDCICGFPGE 284

Query: 343 TDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQ 402
           T  DF  +   + KIG+ +   F YS R GTP  +   QV E  K  R   +     E +
Sbjct: 285 TQADFEESCAFLKKIGFLKVHVFPYSRRSGTPAYDFPAQVHEREKQARSREMNALAEEVR 344

Query: 403 VSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITD 457
                A VG   EVL+E    E     G +     VV+++  H  G+I+ VR+ +
Sbjct: 345 REVLAAHVGTEDEVLLETPLSET-LFTGYTRLYIPVVVSAPGHKSGEIVHVRLGE 398


>gi|189345895|ref|YP_001942424.1| RNA modification enzyme, MiaB family [Chlorobium limicola DSM 245]
 gi|189340042|gb|ACD89445.1| RNA modification enzyme, MiaB family [Chlorobium limicola DSM 245]
          Length = 458

 Score =  152 bits (384), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 131/418 (31%), Positives = 210/418 (50%), Gaps = 44/418 (10%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMD-DADLIVLNTCHIREKAAEKVYSFLGRIRN 89
           + GC++N  ++  + D   ++G+ +++S+D  AD+I+++TC +  +A +K        R 
Sbjct: 17  TMGCKLNYSETSAILDRLSAEGW-KLSSLDAGADMIIIHTCSVTSQAEQKC-------RQ 68

Query: 90  LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ-----TYYRLPELLERAR 144
                I+   + +VVV GC AQ +   +L     V  V+G         YR  ELL++ +
Sbjct: 69  KIRRIIRRHPESVVVVIGCYAQLQ-PALLAGIKGVAAVLGSSDKFVTATYR--ELLDQKQ 125

Query: 145 -FGKRVVDTDYSVEDKFERLSI-VDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            F    V    S E  F   S+ VD G  R R   AFL IQ+GCD  C +C +P+ RG  
Sbjct: 126 TFPLARVSDIGSTETVFPGYSLSVDEGEARTR---AFLKIQDGCDYACAYCTIPHARGRS 182

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG--KGLDGEKCTFSDLLYSLSEIKGL 260
            S    ++V  AR L  +G  EI L G N+  +RG   GL G       LL  L ++  +
Sbjct: 183 RSLPSEELVARARSLAFSGYREIVLTGVNIGDYRGHASGLVG-------LLRMLEDVS-V 234

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R ++  P  + D LI+       + P+ H+P+QSGSD ILK+M RR+T   YR+ + 
Sbjct: 235 DRIRISSLEPDILDDELIETVAASKKITPHFHVPLQSGSDSILKAMRRRYTTESYREKLV 294

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML- 379
           R      D AI +D I G+PGE+++DF      ++ +  A    F  S R GT  +  L 
Sbjct: 295 RAVGAISDCAIGADVIAGYPGESEEDFMQMYRFIEGLPIAYLHVFTCSVRPGTVLAAQLA 354

Query: 380 -------EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLV 429
                    V+ + ++  L+ L K+  E+   ++   +G+  E+L+E   +EK G+LV
Sbjct: 355 ADERRLPSPVELDRRSRLLIELGKRKTEE---YSGKFIGRECEILVEASLREKSGRLV 409


>gi|188995948|ref|YP_001930200.1| putative Fe-S oxidoreductase [Porphyromonas gingivalis ATCC 33277]
 gi|188595628|dbj|BAG34603.1| putative Fe-S oxidoreductases [Porphyromonas gingivalis ATCC 33277]
          Length = 444

 Score =  152 bits (383), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 116/362 (32%), Positives = 178/362 (49%), Gaps = 23/362 (6%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N  ++  +      QG   V   + AD+ V+NTC + E A +K        RN 
Sbjct: 16  TLGCKLNFAETSTIGKALAEQGVRPVREGEKADICVINTCSVTELADKKC-------RNA 68

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER---ARFGK 147
                KE    L++V GC AQ + EEI R    V++V+G      L  +L +     F +
Sbjct: 69  IRKLHKEHPGALMIVTGCYAQLKPEEIARIDG-VDIVLGADEKLDLVSILSQRPIQGFAE 127

Query: 148 RVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           + + T  + +  KF+     D   +R R    FL +Q+GCD  C++C +P  RG   + S
Sbjct: 128 QTILTTPTKDIRKFQPGCSAD---DRTR---HFLKVQDGCDYHCSYCTIPKARGRSRNGS 181

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
           +  +V +A  +   G  EI L G N+  + G+   GE  TF DLL +L +++G+ R R  
Sbjct: 182 IESLVRQAEAVAAEGGKEIVLTGVNIGDF-GRST-GE--TFLDLLRALDQVEGIERYRIG 237

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
           +  P  +SD LI        + P+ H+P+QSGSD +LK M RR+    +R+ ++ IR   
Sbjct: 238 SIEPNLLSDELIDFCASAHRIAPHFHMPLQSGSDDVLKLMRRRYDTALFRERVEHIRRAL 297

Query: 327 PDIAISSDFIVGFPGETDDDFRATMD-LVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
           P   I  D IVG  GE  + F      L DKI +++   F YS R GT    +  +VD  
Sbjct: 298 PHAFIGIDVIVGTRGEKPEFFEDCYSFLQDKISFSRLHVFSYSERPGTQALQIPYKVDAR 357

Query: 386 VK 387
            K
Sbjct: 358 EK 359


>gi|34541783|ref|NP_906262.1| MiaB-like tRNA modifying enzyme [Porphyromonas gingivalis W83]
 gi|34398101|gb|AAQ67161.1| MiaB-like tRNA modifying enzyme [Porphyromonas gingivalis W83]
          Length = 444

 Score =  152 bits (383), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 116/362 (32%), Positives = 178/362 (49%), Gaps = 23/362 (6%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N  ++  +      QG   V   + AD+ V+NTC + E A +K        RN 
Sbjct: 16  TLGCKLNFAETSTIGKALAEQGVRPVREGEKADICVINTCSVTELADKKC-------RNA 68

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER---ARFGK 147
                KE    L++V GC AQ + EEI R    V++V+G      L  +L +     F +
Sbjct: 69  IRKLHKEHPGALMIVTGCYAQLKPEEIARIDG-VDIVLGADEKLDLVSILSQRPIQGFAE 127

Query: 148 RVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           + + T  + +  KF+     D   +R R    FL +Q+GCD  C++C +P  RG   + S
Sbjct: 128 QTILTTPTKDIRKFQPGCSAD---DRTR---HFLKVQDGCDYHCSYCTIPKARGRSRNGS 181

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
           +  +V +A  +   G  EI L G N+  + G+   GE  TF DLL +L +++G+ R R  
Sbjct: 182 IESLVRQAEAVAAEGGKEIVLTGVNIGDF-GRST-GE--TFLDLLRALDQVEGIERYRIG 237

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
           +  P  +SD LI        + P+ H+P+QSGSD +LK M RR+    +R+ ++ IR   
Sbjct: 238 SIEPNLLSDELIDFCASAHRIAPHFHMPLQSGSDDVLKLMRRRYDTALFRERVEHIRRAL 297

Query: 327 PDIAISSDFIVGFPGETDDDFRATMD-LVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
           P   I  D IVG  GE  + F      L DKI +++   F YS R GT    +  +VD  
Sbjct: 298 PHAFIGIDVIVGTRGEKPEFFEDCYSFLQDKISFSRLHVFSYSERPGTQALQIPYKVDAR 357

Query: 386 VK 387
            K
Sbjct: 358 EK 359


>gi|237748960|ref|ZP_04579440.1| fe-s oxidoreductase [Oxalobacter formigenes OXCC13]
 gi|229380322|gb|EEO30413.1| fe-s oxidoreductase [Oxalobacter formigenes OXCC13]
          Length = 463

 Score =  152 bits (383), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 127/466 (27%), Positives = 205/466 (43%), Gaps = 54/466 (11%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC   + DS ++     ++GYE   +  DA L+++NTC   + A  +    +      
Sbjct: 11  SLGCPKALVDSEKILTRLRAEGYETAETYQDAGLVIVNTCGFIDAAEAESLEAIAEA--- 67

Query: 91  KNSRIKEGGDLLVVVAGCVA---QAEGEEILRR-SPIVNVVVGPQTYYRLPELLER--AR 144
               ++E G   V+V GC+      +G + +R   P V  V GP     + + + R   R
Sbjct: 68  ----LEENGK--VIVTGCLGAKKDKDGSDFIRNIHPKVLDVTGPDAVSEVMDAVHRYLPR 121

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
             +  VD             I   G        A+L I EGC   CTFC++P  RG  +S
Sbjct: 122 PHEPFVDL------------IPPQGIKLTPKHYAYLKISEGCSHHCTFCIIPDLRGDLVS 169

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYS 253
             + +V+DEA +L  +GV E+ ++ Q+  A           W G+ +       +  L  
Sbjct: 170 YPIGKVLDEAEQLFASGVKELLVISQDTGAYGLDTRFRTGFWGGRPVKTHVTQLTGALGK 229

Query: 254 LS-EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
           L+ +    VRL Y   +P    D +I    +  VL PYL +P Q     +LK M R  + 
Sbjct: 230 LARKYDAWVRLHYIYPYPH--IDDIIPIMNEGGVL-PYLDVPFQHAHPDVLKRMKRPASG 286

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
             + + I R R + PDI I S FI GFPGET+++F+  +D + +    +   F YSP  G
Sbjct: 287 ERHLEQIQRWRKMCPDITIRSTFITGFPGETEEEFQYLLDFLKEAKIDRLGCFPYSPVEG 346

Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFN--DACVGQIIEVLIEK--HGKEKGKL 428
            P + +   V   V+ ER   L +   ++ +SF      +G+ + VL+++   G   G+ 
Sbjct: 347 APANALPGAVPGEVREERRARLMQ--LQEDISFERLQGKIGKTLRVLVDETIRGGAAGRS 404

Query: 429 VGRSPWLQSVVLNSKNHNI------GDIIKVRITDVKISTLYGELV 468
              +P +  VV   K   +      G+ + V I D     L+G  V
Sbjct: 405 SADAPEIDGVVYVRKPKGMRRKLLPGEFVNVTIEDADAHDLWGLFV 450


>gi|218194881|gb|EEC77308.1| hypothetical protein OsI_15965 [Oryza sativa Indica Group]
          Length = 629

 Score =  152 bits (383), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 123/463 (26%), Positives = 215/463 (46%), Gaps = 55/463 (11%)

Query: 25  QRFFVKSYGC---QMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           Q  +VK++GC   Q +  DS  M     + GY      + ADL ++NTC ++  +   + 
Sbjct: 58  QTIYVKTFGCSHNQASFSDSEYMSGQLSAFGYAITEEPEGADLWLINTCTVKNPSQSAMT 117

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           + + + ++             +VVAGCV Q  G   L+    ++V+ G Q   R+ E++E
Sbjct: 118 TLISKCKSANKP---------LVVAGCVPQ--GSRDLKELEGISVI-GVQQIDRVVEVVE 165

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
               G  V           + L  +D    RK      L I  GC   CT+C   + RG 
Sbjct: 166 ETLKGHEVRLLSR------KTLPSLDLPKVRKNKFIEILPINVGCLGACTYCKTKHARGH 219

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-RGKGLDGEKCTFSDLLYSL-SEIK- 258
             S ++  +VD  + ++  GV EI L  ++  A+ R  G +       +LL  + +E+  
Sbjct: 220 LGSYTIESLVDRVKIVVSEGVREIWLSSEDTGAYGRDIGTN-----LPNLLNGIVAELPA 274

Query: 259 --------GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
                   G+    +   H ++++  L         +  +LH+PVQSGSD +L +MNR +
Sbjct: 275 DRSTMLRIGMTNPPFILEHLKEIASVLCHP-----CVYSFLHVPVQSGSDAVLTAMNREY 329

Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370
           T  E+R+++D +  + P + I++D I GFPGETD+DF  T++LV +  + Q    ++ PR
Sbjct: 330 TVSEFRRVVDTLCELVPGMQIATDIICGFPGETDEDFSQTVNLVKQYQFPQVHISQFYPR 389

Query: 371 LGTPGSNMLEQVDENVKAERLLCLQKKLRE-----QQVSFNDACVGQIIEVLIEKHGKEK 425
            GTP + M +     VK        K+ RE     +  S      G++  + I +   + 
Sbjct: 390 PGTPAARMKKVPSVEVK--------KRSRELTSVFESFSPYQGMEGKVERIWITEIATDG 441

Query: 426 GKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
             LVG +     V++ + +  +G    V+IT V   +++GE++
Sbjct: 442 VHLVGHTKGYIQVLVIAPDSMLGTSADVKITSVGRWSVFGEVI 484


>gi|325972021|ref|YP_004248212.1| ribosomal protein S12 methylthiotransferase rimO [Spirochaeta sp.
           Buddy]
 gi|324027259|gb|ADY14018.1| Ribosomal protein S12 methylthiotransferase rimO [Spirochaeta sp.
           Buddy]
          Length = 449

 Score =  152 bits (383), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 116/425 (27%), Positives = 205/425 (48%), Gaps = 35/425 (8%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEK-VYSF 83
           ++ ++++ GC  N  D+  +  +     +     + +ADLI++NTC   E A E+ + SF
Sbjct: 2   KKVYMENLGCSKNQVDAETLIKLLEDDQFTHTTEVAEADLIMVNTCGFIESAREQSIESF 61

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
                +  N + K      ++++GC+AQ   +E+       + + G +   ++ E++ + 
Sbjct: 62  FSL--HEANPQAK------IILSGCMAQRYAKELQDELGEASAIFGNRDLSKIHEVVRQV 113

Query: 144 RFGKRVV------DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197
             G RV+      D    V ++ E LS            +A+L I EGC+ +C++C +P 
Sbjct: 114 FAGDRVIELPSYPDLANEVYERNELLSFPG---------SAYLKISEGCNHWCSYCAIPL 164

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257
            RG   S+    ++ EAR LI+ G+ EI L+ Q++ A+   G D +   F DLL +L  +
Sbjct: 165 IRGGLRSKLKETILIEARTLIERGIKEINLIAQDLAAYGTDGPD-KSSKFMDLLEALVAL 223

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
            G   +R    +P      L K   +   ++PY  +P Q    ++L+SM R  T   Y  
Sbjct: 224 DGDFSIRLLYIYPDAFPPTLAKFIAEHKKVLPYFDIPFQHADQKVLQSMGRTGTKESYLS 283

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
           +I+ IR+  P+  I S  ++G+P E D  F   +D + K       SF YS   GT   +
Sbjct: 284 LIESIRNTVPEAVIRSTILLGYPTEDDKAFAEVLDFLSKAKLDWVGSFTYSREEGTKAYS 343

Query: 378 MLEQVDENVKAERLL-CLQKKLREQQVSFNDA----CVGQIIEVLIEK--HGKEK--GKL 428
           +  +  E+ KA +L    Q +L+  Q    +A     VG+  EVLIE+   G++   G++
Sbjct: 344 LRGE-REHKKANKLAQGYQAQLQALQGPITNANLARFVGKEYEVLIEELVEGEDLAIGRM 402

Query: 429 VGRSP 433
            G++P
Sbjct: 403 YGQAP 407


>gi|268325056|emb|CBH38644.1| conserved hypothetical protein, UPF0004 family, radical SAM
           superfamily, TRAM family [uncultured archaeon]
          Length = 430

 Score =  152 bits (383), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 119/446 (26%), Positives = 220/446 (49%), Gaps = 50/446 (11%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + F++++GC  N  D++ M  +  + G+E V    +AD++++NTC + ++        L 
Sbjct: 12  KVFIETFGCTANTGDTMEMRAILRNAGHEIVEE-SEADIVIVNTCTVTKRTE------LN 64

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            I+ L  + +KE G   VVVAGC+A A+ E       +V  ++G       P  ++ AR 
Sbjct: 65  VIKRL--NELKERGK-AVVVAGCMAAAQPE-------LVRSILGDDVAMVTPRDIQ-ARE 113

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            +R+         +F+             GV A +TI +GC   CT+C+V   RG   S 
Sbjct: 114 KQRL---------EFD-------------GVIAVITIAQGCIGKCTYCIVKQARGKLKSY 151

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
              ++ +  +  +++G  EI +  Q+ +A+   G          LL  ++ ++G  R+R 
Sbjct: 152 KPEKICEAVKSAVESGANEIRITSQDSSAY---GWGSTDIKLPALLEQITSVEGDFRIRV 208

Query: 266 TTSHPRDMS---DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
              +P  +    D L++A  + + +  + H+PVQSGSDR+L+ M R +   ++ +I+  I
Sbjct: 209 GMMNPFTLMPILDELLEAF-NTEKIFKFFHVPVQSGSDRVLREMRRNYKVADFVEIVTNI 267

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+      IS+DFI+GFP ET++DF A++ L+++I   +    ++SPR  T  S + + +
Sbjct: 268 RARFRQSTISTDFIIGFPTETEEDFFASLYLLEEIKPEKVNITRFSPRPRTEASKLTDLL 327

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
            E  K  R             + N    G  + VL+ + GK KG ++ R    +++VL  
Sbjct: 328 -EREKKRRSRIFSTGYHNIVFAKNKELEGAELPVLVTEPGK-KGGVIARDSAYRAIVLKD 385

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
            +  +G    VR+ + K + L  +++
Sbjct: 386 -DLPLGAHYNVRVKEAKSTYLVADIL 410


>gi|262199231|ref|YP_003270440.1| MiaB-like tRNA modifying enzyme [Haliangium ochraceum DSM 14365]
 gi|262082578|gb|ACY18547.1| MiaB-like tRNA modifying enzyme [Haliangium ochraceum DSM 14365]
          Length = 449

 Score =  152 bits (383), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 129/397 (32%), Positives = 202/397 (50%), Gaps = 27/397 (6%)

Query: 28  FVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRI 87
           F+ + GC++N  +  R    F   G+  V + DDAD++V+NTC +  +AA K    +GR+
Sbjct: 4   FLTTLGCRLNEAELSRWARDFHRSGHRVVAAADDADVVVVNTCAVTGEAARKSRKLVGRL 63

Query: 88  -RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
            R    +R+        V+ GC A  E  E+ +    V++VV      RL  L+  A F 
Sbjct: 64  HRQRPEARM--------VLTGCFAALE-PEVAQALAGVDMVVANVDKDRLVPLVAEA-FS 113

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
              +    +  D     +   GG  R     AF+ +Q+GC   CTFC+V   RG E SRS
Sbjct: 114 APGMPILATEPDSVHAYADRPGGRTR-----AFIKVQDGCKNRCTFCIVTVARGEERSRS 168

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
           +++VVDE R L   G  E  L G ++  + G+ L  +  T  D + + ++I    RLR +
Sbjct: 169 VAEVVDEIRALAAAGYREAVLTGVHLGGY-GRDLGTDLRTLVDAVLADTDI---ARLRLS 224

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
           +  P D+ +       +   LMP+LHLP+QSGSD +L  M RR  A ++  ++   R+  
Sbjct: 225 SLEPWDLPEDFWTLWRN-PRLMPHLHLPLQSGSDSVLARMARRSRAADFAALVADARAAI 283

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
            D+ +++D IVGFPGE+D ++  T+D V +IG+     F YSPR GT  + + +QV   V
Sbjct: 284 ADLTLTTDLIVGFPGESDAEWAETVDYVQRIGFGHMHIFSYSPREGTRAARLSDQVRGPV 343

Query: 387 KAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
           K  R   +  L   ++ + ++     VGQ   VL E 
Sbjct: 344 KRARSREMHALAATMKREHLA---RFVGQERPVLWES 377


>gi|149186943|ref|ZP_01865252.1| hypothetical protein ED21_22333 [Erythrobacter sp. SD-21]
 gi|148829452|gb|EDL47894.1| hypothetical protein ED21_22333 [Erythrobacter sp. SD-21]
          Length = 457

 Score =  152 bits (383), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 127/462 (27%), Positives = 205/462 (44%), Gaps = 48/462 (10%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC   + DS R+     + GY        AD++++NTC   + A E+    +G     
Sbjct: 18  SLGCPKALVDSERILTRLRADGYAMSPDYAGADVVLVNTCGFLDSAKEESLQAIGEA--- 74

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               I E G   V+V GC+ + E   I    P V  V G   Y  + E +       +  
Sbjct: 75  ----IAENGR--VIVTGCMGE-EANAIRAAHPSVLAVTGAHQYEAVVEAVHEHAPPSQGP 127

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
             D   +     + +    Y+       +L I EGC+  C FC++P  RG   SR +  V
Sbjct: 128 YIDLIPQPD---VKLTPRHYS-------YLKISEGCNHSCAFCIIPDLRGKLASRRIDAV 177

Query: 211 VDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYSLSEIKG 259
           + EA KL+  G  E+ ++ Q+ +A           W+G+ +       +  L  L    G
Sbjct: 178 LREAEKLVAAGTKELLVISQDTSAYGVDTRHESKAWKGREVRAHMTELARELGQLDIGGG 237

Query: 260 L---VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           +   VRL Y   +P   +   + A G   +L PYL +P Q  S ++L+SM R     +  
Sbjct: 238 MPPWVRLHYVYPYPHVDAVIPLMAEG---LLTPYLDIPFQHASPKVLRSMKRPANEAKVL 294

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
           + +   R + P+IAI S F+VGFPGETDDDF+  +D +++    +  +F++ P  G   +
Sbjct: 295 ERLKGWREICPEIAIRSSFVVGFPGETDDDFKYLLDWLEEAQLDRVGAFRFEPVEGAQAN 354

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK--EKGKL--VGRS 432
           ++ + V E +K ER   + +       +   A VG+ I V+I++ G+  E G +   GRS
Sbjct: 355 HLPDPVPEEIKEERYARVMEVTERISSAKLQAKVGRSIPVIIDEVGEPDEDGDIGATGRS 414

Query: 433 ----PWLQSVVL---NSKNHNIGDIIKVRITDVKISTLYGEL 467
               P +   V           GDI+ V + D     L+G L
Sbjct: 415 QADAPEIDGAVYLRNVPGTLAAGDIVNVTVEDADAHDLFGIL 456


>gi|307636979|gb|ADN79429.1| MiaB family protein [Helicobacter pylori 908]
 gi|325995571|gb|ADZ50976.1| MiaB-like tRNA modifying enzyme [Helicobacter pylori 2018]
 gi|325997166|gb|ADZ49374.1| putative MiaB like protein [Helicobacter pylori 2017]
          Length = 418

 Score =  152 bits (383), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 112/395 (28%), Positives = 193/395 (48%), Gaps = 45/395 (11%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF--FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           ++ + K++GC+ N++D+  M +    FS   E      +AD+IV+N+C +   A   V S
Sbjct: 2   KKVYFKTFGCRTNLFDTQVMGENLKDFSATLEE----QEADIIVINSCTVTNGADSAVRS 57

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-E 141
           +  ++  L            V+  GC  + +G+E+  +   +  V G     ++  LL E
Sbjct: 58  YAKKMARLNKE---------VLFTGCGVKTQGKELFEKG-FLKGVFGHDNKEKINALLQE 107

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           + RF       D ++E+K    ++V     + R   AF+ IQEGCD  C +C++P  RG 
Sbjct: 108 KKRFF-----IDDNLENKHLDTTMVSEFVGKTR---AFIKIQEGCDFDCNYCIIPSVRGR 159

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW---RGKGLDGEKCTFSDLLYSLSEIK 258
             S    +++++   L   GV E+ L G NV ++   RG  +       + L+  LS+I 
Sbjct: 160 ARSFEERKILEQVGLLCSKGVQEVVLTGTNVGSYGKDRGSNI-------ARLIKKLSQIT 212

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           GL R+R  +  P  ++D  ++  G+ D L  +LH+ +Q   D +L+ MNRR+     R++
Sbjct: 213 GLKRIRIGSLEPNQINDEFLELLGE-DFLEKHLHIALQHSHDFMLERMNRRNRTKSDREL 271

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           +++I S   + AI +DFIVG PGE++  F      ++ +       F YS R  TP S M
Sbjct: 272 LEKIAS--KNFAIGTDFIVGHPGESESVFEKAFKNLESLPLTHIHPFIYSKRKDTPSSLM 329

Query: 379 LEQVDENVKAERLLCLQ-------KKLREQQVSFN 406
            + V   V  +RL  ++       K  R+ Q+  N
Sbjct: 330 RDSVSLEVSKKRLNAIKDLIFHKNKAFRQLQLKLN 364


>gi|319942388|ref|ZP_08016702.1| ribosomal protein S12 methylthiotransferase rimO [Sutterella
           wadsworthensis 3_1_45B]
 gi|319804076|gb|EFW00984.1| ribosomal protein S12 methylthiotransferase rimO [Sutterella
           wadsworthensis 3_1_45B]
          Length = 448

 Score =  151 bits (382), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 139/468 (29%), Positives = 216/468 (46%), Gaps = 47/468 (10%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           +P   FV S GC   + D+ R+     ++GY   ++  DAD++++NTC    +A E+   
Sbjct: 6   IPVVGFV-SLGCPKALVDTERIVTELRARGYRIGSTYKDADVVIVNTCGFVNEAVEES-- 62

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVA---QAEGEE-ILRRSPIVNVVVGPQTYYRLPE 138
            LG I       +KE G   V+V GC+    +A+G   I+ R P V  V GP +   +  
Sbjct: 63  -LGAI----AEALKENGR--VIVCGCLGGRTEADGSNFIMVRHPKVIGVTGPDSVDEVLA 115

Query: 139 LLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
           ++E       V+   +   D      +   G        A+L I EGC+  CTFCV+P+ 
Sbjct: 116 MVEG------VLPRPHDPWDDL----VPAAGVRLTPKHYAYLKISEGCNHHCTFCVIPHL 165

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE-KCTFS--------- 248
           RG   SRS+  ++ EA  L   GV E+ ++ Q+  A+   G+D   K  F+         
Sbjct: 166 RGSLNSRSMDSIIREAMNLKAAGVKELLVISQDTAAY---GVDKRYKLDFACGRPVHTKL 222

Query: 249 -DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307
            DL   L  +    RL Y   +P       + A G   +++PYL +P Q    RILK M 
Sbjct: 223 IDLCRELGRLDLWTRLHYVYPYPHVDDIVPLMAEG---LILPYLDVPFQHAHPRILKLMK 279

Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           R     +  + I   R   PDI I S FIVGFPGET+ +F   +D + +    +   F Y
Sbjct: 280 RPACGEKNLERIAAWRRACPDITIRSTFIVGFPGETEAEFEYLLDFLREAELDRVGCFAY 339

Query: 368 SPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK 427
           SP  G   +++   + + V+ ER     +   E  +      +G+I +V+I++   E G 
Sbjct: 340 SPVDGAAANDLPGALPDEVREERRRRFMEVQAEISLRKLARRIGRIEDVIIDEEPDEDGV 399

Query: 428 LVGRS----PWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELVV 469
            VGR+    P +  V   + +  +  GDI+ VRIT  +   L G  VV
Sbjct: 400 AVGRTKSDAPDIDGVCYVTTDRKLVPGDIVPVRITANEEHDLVGREVV 447


>gi|225848434|ref|YP_002728597.1| hypothetical protein SULAZ_0612 [Sulfurihydrogenibium azorense
           Az-Fu1]
 gi|225643287|gb|ACN98337.1| conserved hypothetical protein [Sulfurihydrogenibium azorense
           Az-Fu1]
          Length = 405

 Score =  151 bits (382), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 115/424 (27%), Positives = 208/424 (49%), Gaps = 42/424 (9%)

Query: 47  MFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVA 106
           M  +   E   S +DAD+I++NTC   + A E+  + +     L+   +KE     V+V 
Sbjct: 1   MLNTTEVEFTQSSEDADVILINTCGFIDAAKEESINTI-----LEAVSLKEKSHKKVIVT 55

Query: 107 GCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIV 166
           GC+ +   +E+ +  P V+  +  +    +P+ L              S++ K E   I+
Sbjct: 56  GCLVERYKQELEKEIPEVDEFIDLKNQTTIPQKL--------------SIQVKPESKRII 101

Query: 167 DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEIT 226
               +      A+L I EGCD  C+FC +P  RG   S+ + ++V+EA+ L D GV E+ 
Sbjct: 102 STPKH-----LAYLKISEGCDHTCSFCAIPNIRGKHKSKPIEKLVEEAKYLADQGVKELN 156

Query: 227 LLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV 286
           ++ Q+  ++ G  + G+   F +LL  L +++G+  +R    +P  +++   K   D   
Sbjct: 157 IVSQD-TSYYGTDIYGKPMLF-ELLRKLEKVEGIKWIRLYYLYPTTVNEDFFKFIKDSQK 214

Query: 287 LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDD 346
           ++PY+ +P+Q   D ILK M R +   +  QI++      PD+ I S  IVG+P E + D
Sbjct: 215 VLPYIEMPIQHTQDHILKDMMRGYRKKKLYQILEWKEKYTPDMTIRSSVIVGYPTEKEKD 274

Query: 347 FRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQ-VSF 405
           F + ++ + +  +     F YS   GTP     +  D+  K E+L    + ++ Q+ +++
Sbjct: 275 FLSMLEFLKEAKFDWLGVFTYSHEEGTPAYE--KHKDKIPKKEKLRRFNEVIKLQEDITY 332

Query: 406 --NDACVGQIIEVLIEKHGKEKGKL-VGRSPWLQSV--------VLNSKNHNIGDIIKVR 454
             N   VG+  EV+++   +E   L +GRS   +S         +  ++    GDIIKV+
Sbjct: 333 EKNFQTVGKEFEVIVDGFSEEWETLPIGRS--YRSAYDIDGIIYIETTQPLKTGDIIKVK 390

Query: 455 ITDV 458
           I +V
Sbjct: 391 IKEV 394


>gi|118594973|ref|ZP_01552320.1| hypothetical protein MB2181_04855 [Methylophilales bacterium
           HTCC2181]
 gi|118440751|gb|EAV47378.1| hypothetical protein MB2181_04855 [Methylophilales bacterium
           HTCC2181]
          Length = 442

 Score =  151 bits (382), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 122/463 (26%), Positives = 221/463 (47%), Gaps = 52/463 (11%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
            P+  F+ S GC     D+ +M     ++GYE  N+  +++L+++NTC   + A E+   
Sbjct: 9   APKIGFI-SLGCPKAGSDTEKMLSQIKAEGYEIANNYKESELVIVNTCGFIDSAVEESLD 67

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL--L 140
            +       +  + E G   V+V GC+ + + + I +R   +  + G + Y  + E   L
Sbjct: 68  AI-------SEALDENGK--VIVTGCLGERK-DVIEKRFNNLLAITGSEAYQEVMEAVHL 117

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
              +     +D             I   G        A++ I EGC+  CTFC++P  RG
Sbjct: 118 HAPKPTNPHIDL------------IPPQGIRLTPKHYAYIKISEGCNHKCTFCIIPSMRG 165

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSD 249
             ISR +  ++ EA  L+++GV E+ ++ Q+ +A           W G+ +   K    +
Sbjct: 166 KLISRPIGDIMQEAENLVNSGVSELIIISQDTSAYGVDVKYRPGFWNGRPI---KTDLYN 222

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
           L  SLSE+   VR  Y   +P    D LI+      +++PY+ +P Q  +  ILKSM R 
Sbjct: 223 LAKSLSELGVWVRFHYVYPYPN--VDRLIELMAS-GLILPYIDVPFQHANPTILKSMKRP 279

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369
             A    + I+  R++ P++ I S FIVGFPGET++ F   ++ ++     +   F YS 
Sbjct: 280 ANAENNLERINGWRAICPNLTIRSTFIVGFPGETEEQFEDLLEFLELAQLDRVGCFTYSD 339

Query: 370 RLGTPGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-- 424
             G   + + +Q+ E+VK +   R + +Q  + ++++  N   VG +  VLI++ G++  
Sbjct: 340 VDGATANLLDKQIPEDVKQDRYIRFMTVQNAISKKKL-LNK--VGTVHTVLIDEVGEDYA 396

Query: 425 KGKLVGRSPWLQSVVL--NSKNHNIGDIIKVRITDVKISTLYG 465
           K +    +P +   +   N +   +GD++ V+I   +   LY 
Sbjct: 397 KARSYANAPEIDGNIFLENPEGLEVGDMLDVKIKRSEEYDLYA 439


>gi|302522260|ref|ZP_07274602.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Streptomyces sp. SPB78]
 gi|302431155|gb|EFL02971.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Streptomyces sp. SPB78]
          Length = 499

 Score =  151 bits (382), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 124/460 (26%), Positives = 195/460 (42%), Gaps = 62/460 (13%)

Query: 23  VPQRFFVK--SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKV 80
           +P+R  V   + GC  N  DS  +     + G++ V     AD+ V+NTC   E A +  
Sbjct: 1   MPERRTVALVTLGCARNEVDSEELAGRLEADGWDLVEDASHADVAVVNTCGFVEAAKKDS 60

Query: 81  YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140
              L    +LK      G    VV  GC+A+  G+++    P  + V+G   Y  + + L
Sbjct: 61  VDALLEANDLKG----HGRTQAVVAVGCMAERYGKDLAEALPEADGVLGFDDYADISDRL 116

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT----------------------- 177
           +    G   +   ++  D+ + L +         GV                        
Sbjct: 117 QTILSGG--IHASHTPRDRRKLLPLSPAARQDASGVALPGHAQQAPEPEDVAPADLPDGL 174

Query: 178 -------------------AFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLI 218
                              A + +  GCD+ C+FC +P  RG  ISR  S V+ E R L 
Sbjct: 175 APASGPRAPLRRRLGASPVASVKLASGCDRRCSFCAIPSFRGSFISRRPSDVLTETRWLA 234

Query: 219 DNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLI 278
           + GV E+ L+ +N N   GK L G+      LL  L+ + G+ R+R +   P +M   LI
Sbjct: 235 EQGVREVMLVSEN-NTSYGKDL-GDIRLLETLLPELAAVDGIERVRVSYLQPAEMRPGLI 292

Query: 279 KAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVG 338
                   + PY  L  Q  +  +L++M R      +  ++D+IR+  P+  + S+FIVG
Sbjct: 293 DVLTSTPKIAPYFDLSFQHSAAGVLRAMRRFGGTDSFLGLLDQIRAKAPEAGVRSNFIVG 352

Query: 339 FPGETDDDFRA-----TMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLC 393
           FPGET++D        T   +D IG      F YS   GT  +    ++DE V AERL  
Sbjct: 353 FPGETEEDVAELERFLTSARLDAIGV-----FGYSDEEGTEAATYATKLDEEVVAERLAR 407

Query: 394 LQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSP 433
           + +   E      +  +G+ +EVL+E    E    +GR P
Sbjct: 408 VSRLAEELTAQRAEERIGETMEVLVESAATEDEPALGRGP 447


>gi|323699272|ref|ZP_08111184.1| MiaB-like tRNA modifying enzyme YliG [Desulfovibrio sp. ND132]
 gi|323459204|gb|EGB15069.1| MiaB-like tRNA modifying enzyme YliG [Desulfovibrio desulfuricans
           ND132]
          Length = 442

 Score =  151 bits (382), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 131/457 (28%), Positives = 207/457 (45%), Gaps = 43/457 (9%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTC-HIREKAAEKVYS 82
           R +  S GC  N  D+   E +  + G   V + D   ADL+++NTC  I+    E V +
Sbjct: 10  RTYTVSLGCPKNRVDT---ERLLGALGPHMVPADDAAGADLVLINTCGFIQPAVEESVAT 66

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            L  I     +  + G   L+ VAGC+    GE++    P V++ +  +   + P +  R
Sbjct: 67  ILDVIGEAAETFDRTGRRPLICVAGCLVSRYGEDLRSELPEVDLWLNTEEIEQWPAMAAR 126

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           A   +   DT  S+                     A+L + EGC   C FC +P  RG  
Sbjct: 127 ALALRLTGDTPRSLSTGPSY---------------AYLKVSEGCSHNCRFCTIPSIRGPH 171

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            S  +  +++EAR L+   V EI ++GQ+  A+ G  L G       LL  L+ I  L  
Sbjct: 172 RSWPVDFLLNEAR-LLAGQVPEIIVVGQDSTAY-GSDL-GPGNDLPTLLRGLAAIPDLHW 228

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDV-LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           LR    +P  +++ L+    D     +PY  +P+Q     +L SM R   A    ++++R
Sbjct: 229 LRIMYLYPAGLTESLLGLLRDTGAPFLPYFDIPLQHAHPDVLASMGRPF-ARNPEKVVER 287

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R   P+ A+ + FIVG+PGET+  FR  MD V +  +     F Y    GTP + M  Q
Sbjct: 288 VRRFFPEAALRTTFIVGYPGETEAHFRTLMDFVRETRFHHLGVFPYWAEEGTPAAAMDGQ 347

Query: 382 VDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRSPWLQS 437
           V + VK    +RL+ LQ ++  + +   +  VG  + V+IE+   E  G  VGR+ W Q+
Sbjct: 348 VPDEVKLDRRDRLMALQAEISAEIL---EGYVGATLPVVIERESDEWPGLYVGRA-WFQA 403

Query: 438 VVLNSKNH---------NIGDIIKVRITDVKISTLYG 465
             ++   +           GDI+ V I       L G
Sbjct: 404 PEVDGVTYVGAPPETALRPGDILDVEIEKADTYDLSG 440


>gi|195488757|ref|XP_002092449.1| GE14196 [Drosophila yakuba]
 gi|194178550|gb|EDW92161.1| GE14196 [Drosophila yakuba]
          Length = 552

 Score =  151 bits (382), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 130/467 (27%), Positives = 224/467 (47%), Gaps = 45/467 (9%)

Query: 18  VDQCIVP--QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREK 75
           +   ++P  Q+ FVK++GC  N  DS  M     + GY +++  ++ADL +LN+C ++  
Sbjct: 62  IHASVIPGTQKVFVKTWGCAHNNSDSEYMAGQLAAYGY-KLSGKEEADLWLLNSCTVKNP 120

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVN--VVVGPQTY 133
           + +         RN   S ++ G    VVVAGCV Q        +S  +N   V+G Q  
Sbjct: 121 SEDT-------FRNEIESGMRNGKH--VVVAGCVPQGAP-----KSDYLNGLSVIGVQQI 166

Query: 134 YRLPELLERARFGKRV--VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCT 191
            R+ E++E    G  V  +     V  +    + +     RK  +   ++I  GC   CT
Sbjct: 167 DRVVEVVEETLKGNSVQLLQNKKKVHGRRVAGAPLSLPKVRKNRLIEIISINSGCLNQCT 226

Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLL 251
           +C   + RG   S    +VV+ AR+    G CEI L  ++  A+ G+ +     +  +LL
Sbjct: 227 YCKTKHARGDLASYPPEEVVERARQSFAEGCCEIWLTSEDTGAY-GRDIGS---SLPELL 282

Query: 252 YSLSEI--------KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
           + L E+         G+    Y   H  +++  L         +  +LH+PVQSGSD +L
Sbjct: 283 WQLVEVIPEHCMLRVGMTNPPYILEHLEEVAKVLQHPR-----VYAFLHVPVQSGSDSVL 337

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
             M R +   ++  ++D +R   P + I++D I GFP ET++DF  TM L  K  +   F
Sbjct: 338 GEMKREYCRQDFEHVVDFLRERVPGVTIATDIICGFPTETEEDFEETMTLCAKYRFPSLF 397

Query: 364 SFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDAC--VGQIIEVLIEKH 421
             ++ PR GTP + M E++  N+  +R     K+L +   S+      VG++  VL+ + 
Sbjct: 398 INQFFPRPGTPAAKM-ERIPANLVKKR----TKRLTDLFYSYEPYAERVGEVYTVLVTEV 452

Query: 422 GKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
             +K   VG +   + V+L  +++ +G  + VRIT     ++ GE++
Sbjct: 453 SHDKLHYVGHNKSYEQVLLPMRDNLLGTRVHVRITSASKFSMVGEIL 499


>gi|18313702|ref|NP_560369.1| hypothetical protein PAE2939 [Pyrobaculum aerophilum str. IM2]
 gi|18161255|gb|AAL64551.1| conserved hypothetical protein [Pyrobaculum aerophilum str. IM2]
          Length = 416

 Score =  151 bits (382), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 137/455 (30%), Positives = 221/455 (48%), Gaps = 52/455 (11%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ +V++YGC +   D+   E +    G E  ++++++D++++ TC +RE    +    L
Sbjct: 2   RKVYVETYGCWLAKADA---EILRQRLGLELASNVEESDVVLIYTCAVREDGEVRQ---L 55

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            RIR+L  S    G ++  +VAGC+A+      LR   I ++  G    Y  P+ +E   
Sbjct: 56  ARIRDLAKS----GREM--IVAGCLAR------LRPYTIKSLAPGAALIY--PQQVEGG- 100

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG---I 201
                       E + + L    GG      V   + +Q GC   CTFC   YTRG    
Sbjct: 101 -----------PEREMKILPEFSGG------VVYTVPLQVGCLGNCTFCATKYTRGGAGY 143

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS-LSEIKGL 260
             S    +VV + +K +  G  EI L GQ+V  +  +          DLL   L E+ G 
Sbjct: 144 VKSADPEEVVRKVKKAVAMGAREIYLTGQDVITYGFEMRWKRGWNLPDLLERILKEVDGE 203

Query: 261 VRLRYTTSHP---RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
            R+R   S P      +D ++        +  Y HLPVQSGSD++L+ M R++T  EYR+
Sbjct: 204 YRIRIGMSEPWVFEKFADQILDVVKRDRRVYRYFHLPVQSGSDKVLRVMGRKYTVDEYRE 263

Query: 318 IIDRIRSVRPDIA-ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
           ++ +IR V  +   I++D IVGFPGE ++DF AT+ L +++ + +    ++SPR  T  +
Sbjct: 264 LVRKIRRVLGETTFIATDIIVGFPGEEEEDFWATVKLAEELQFDKIHVARFSPRPFTEAA 323

Query: 377 NMLEQVDENVKAERLLCLQK-KLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWL 435
            M +QV +  K  R   L +  L+   V  N   VG   EVLI++   + G +VGR+   
Sbjct: 324 VMPKQVPDVEKKRRSKALSEISLKIAHVR-NGLRVGTKDEVLIDEI--DHGLVVGRASDY 380

Query: 436 QSVVLNSKNHN--IGDIIKVRITDVKISTLYGELV 468
           + VV+    H   +G    VRI       LY E++
Sbjct: 381 RQVVVKRGTHRELLGKFTNVRIVAAGPIYLYAEVI 415


>gi|325967748|ref|YP_004243940.1| RNA modification enzyme, MiaB family [Vulcanisaeta moutnovskia
           768-28]
 gi|323706951|gb|ADY00438.1| RNA modification enzyme, MiaB family [Vulcanisaeta moutnovskia
           768-28]
          Length = 452

 Score =  151 bits (381), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 127/458 (27%), Positives = 213/458 (46%), Gaps = 41/458 (8%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           +  +F V ++GC +N  DS  +     S G+E    +  AD I++NTC +RE+A      
Sbjct: 1   MANKFTVITFGCWLNKADSDIVITRLRSLGWEYTEDIKSADTIIINTCAVREEAERNELK 60

Query: 83  FLGRI-RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
            L ++     N R+        +V GC+ +     I   +P   +V          E ++
Sbjct: 61  LLRKLSEEYLNKRL--------IVTGCLTRVRPAMIKDAAPNAVLVTSHGA-----EFID 107

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR-- 199
               G+  +   Y  ED+   +  +   Y    G    + IQ GC   C+FCV    R  
Sbjct: 108 EVVNGRNDI---YVYEDR--PMKYLPSYYPEFHGHRYVVPIQVGCLGNCSFCVTKVGRMG 162

Query: 200 -GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-RGKGLDGEKCTFSDLLYS-LSE 256
            G   S  +S + +     +  G  EI L GQ ++A+ R +G D      +DLL + L +
Sbjct: 163 FGKVRSYEMSDITNAVANAVSRGAREIYLTGQEISAYGRDRGYD-----LADLLENILGK 217

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMP------YLHLPVQSGSDRILKSMNRRH 310
           + G   +R     P ++S  + +    LD++        + H+PVQSGSDRIL  M R++
Sbjct: 218 VDGRFMIRLGMMEPLELSRVIDRL---LDIVKSDWRVYRFFHIPVQSGSDRILTLMKRKY 274

Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370
           +   ++ I+ RIR V PD  I +D IVGFPGETD+DF A++ L++++   +    +YS R
Sbjct: 275 SVSLFKDIVTRIRRVFPDATIVTDIIVGFPGETDEDFWASVRLIEELSIDKVNLARYSRR 334

Query: 371 LGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG 430
             T  + M EQV E +K ER     +   +  +  N   +G+ +  +  +        + 
Sbjct: 335 PFTEAAYM-EQVPEQIKKERSKVATEIFNKVALERNKPFIGKEMWGITSEIDFRGENYIV 393

Query: 431 RSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           RS   + + +  K  +IG  +KV++ D     L G+L+
Sbjct: 394 RSYNYKPIAV--KKADIGAFVKVKVMDATSHRLLGQLL 429


>gi|313679667|ref|YP_004057406.1| RNA modification enzyme, miab family [Oceanithermus profundus DSM
           14977]
 gi|313152382|gb|ADR36233.1| RNA modification enzyme, MiaB family [Oceanithermus profundus DSM
           14977]
          Length = 445

 Score =  151 bits (381), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 128/448 (28%), Positives = 212/448 (47%), Gaps = 35/448 (7%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           +V  R  V++ GC++N  +S  +  M  +   E V   + ADL+V+NTC +   A     
Sbjct: 15  MVRMRIAVRTLGCKVNQVESDALVGMLAALEPEVVALEEGADLVVINTCSVTTTAESTAR 74

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPE-LL 140
             + R R       +   D  VVV GC A+   E+I       + VV  ++   LP  +L
Sbjct: 75  KEIRRAR-------RANPDAFVVVTGCYAELAPEQIAELG--ADAVVPNRSKAELPRVIL 125

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           E   FG   +  D       E     + G    R V AF+ IQ+GC+  C +C++P TRG
Sbjct: 126 EH--FG---LPADPVTAPPNEFWGAGERGLYSDR-VRAFVKIQDGCNAGCAYCIIPRTRG 179

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG--KGLDGEKCTFSDLLYSLSEIK 258
            E  R    V++EA  L   G  E+ L G  + ++ G  +G+ G       LL  L+ + 
Sbjct: 180 RERHRDWRSVLEEAEALAAAGYRELVLTGVRLGSYAGHPRGVAG-------LLEELAAVG 232

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLM-PYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
             V LR ++  P D    L++  G     + P+LHL +Q+G+DR+L  M RR+    YR+
Sbjct: 233 --VPLRLSSIEPEDTGPELLEVIGRYAPFVRPHLHLSLQTGADRLLALMGRRYDTAYYRE 290

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
           ++   R+  P  A+++D I G P ET+D+ RAT+  + ++  ++   F Y+PR GT  + 
Sbjct: 291 LVAAARARIPGFALTTDVIAGLPTETEDEHRATLAFLREVHPSRVHVFTYTPRPGTRAAR 350

Query: 378 M--LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWL 435
           +  +   +   +   L+ L  +L E ++      +G+   VL+E+     G   G +P  
Sbjct: 351 LPQVPHAERKRRTHELIALAGELAEARMR---PLLGRRTAVLVER--VRSGVAYGHTPDY 405

Query: 436 QSVVLNSKNHNIGDIIKVRITDVKISTL 463
             V L  +    G+ ++  I  V+  TL
Sbjct: 406 YEVELRGEGLAAGEEVQAVIERVEGYTL 433


>gi|152981113|ref|YP_001353088.1| MiaB-like tRNA modifying enzyme [Janthinobacterium sp. Marseille]
 gi|238066330|sp|A6SXU1|RIMO_JANMA RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|151281190|gb|ABR89600.1| MiaB-like tRNA modifying enzyme [Janthinobacterium sp. Marseille]
          Length = 453

 Score =  151 bits (381), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 127/476 (26%), Positives = 218/476 (45%), Gaps = 63/476 (13%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
            P+  FV S GC   + DS ++     ++GY+   S D ADL+++NTC   + A ++   
Sbjct: 8   TPKIGFV-SLGCPKALVDSEQILTQLRAEGYDTAKSYDGADLVIVNTCGFIDAAVQESLD 66

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQ---AEGEEILRR-SPIVNVVVGPQTYYRLPE 138
            +G         + E G   V+V GC+     A+G++I+++  P V  V GP     + +
Sbjct: 67  AIGE-------ALHENGK--VIVTGCLGAKKDADGDDIIQKVHPKVLAVTGPHALGEVMD 117

Query: 139 LLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
            + +          D           +   G        A+L I EGC+  C+FC++P  
Sbjct: 118 AVHKHMPKPHAPFIDL----------VPAQGIKLTPKHFAYLKISEGCNHRCSFCIIPSM 167

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTF 247
           RG  +SR ++ V+ EA  L   GV E+ ++ Q+ +A           W GK +   K   
Sbjct: 168 RGDLVSRPIADVMMEAENLFKAGVKELLVISQDTSAYGVDVKFRMGFWNGKPV---KTHM 224

Query: 248 SDLLYSLSEIK----GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
           + L+ +L E+       VRL Y   +P   +   + A G    ++PYL +P+Q     +L
Sbjct: 225 TQLVEALGELAKQYGAWVRLHYVYPYPHVDAIIPMMAEGK---ILPYLDVPLQHAHPDVL 281

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           K M R  +  +  + I   R++ PD+ I S FI GFPGETD +F   +D + +    +  
Sbjct: 282 KRMKRPASGEKNIERIQAWRAMCPDLTIRSTFIAGFPGETDAEFEYLLDFLKEAEIDRLG 341

Query: 364 SFKYSPRLGTPGSNMLEQVD---ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
            F YSP  G   +++   V       +  R++ LQ+++ ++++    A VG+ + VL+++
Sbjct: 342 CFAYSPVEGATANDLPNAVPEEVREERRGRVMLLQEEISKKRLQ---AKVGKTMRVLLDE 398

Query: 421 HGKEKGKLVGRS----PWLQSVVLNSKNH------NIGDIIKVRITDVKISTLYGE 466
             +  G  V RS    P +  VV     +       +G+ I V+IT      L+ E
Sbjct: 399 VNRNGG--VARSGADAPEIDGVVYVKPPYEPHLKLKVGEFIDVKITGADAHDLWAE 452


>gi|89053506|ref|YP_508957.1| ribosomal protein S12 methylthiotransferase [Jannaschia sp. CCS1]
 gi|123286909|sp|Q28TN0|RIMO_JANSC RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|88863055|gb|ABD53932.1| SSU ribosomal protein S12P methylthiotransferase [Jannaschia sp.
           CCS1]
          Length = 458

 Score =  151 bits (381), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 125/454 (27%), Positives = 202/454 (44%), Gaps = 33/454 (7%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R  + S GC   + DS R+     ++GY        A+ +++NTC   + A  +    +G
Sbjct: 27  RIGMVSLGCPKALVDSERILTRLRAEGYAISPDYTGAEAVIVNTCGFLDSAKLESLEAIG 86

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                            V+V GC+  AE E I    P V  V GPQ Y ++ + +  A  
Sbjct: 87  EALEANGK---------VIVTGCLG-AEPEYITGAHPTVLAVTGPQQYEQVLDAVHGAV- 135

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                       D F  L +   G        A+L I EGCD  C FC++P  RG  +SR
Sbjct: 136 --------PPAPDPFIDL-LPPAGVKLTPRHYAYLKIAEGCDHKCKFCIIPDMRGKLVSR 186

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNA----WRGKGLDG-EKCTFSDLLYSLSEIKGL 260
             + V+ EA KL+D+GV E+ ++ Q+ +A    W+ +   G EK    +L   LS +   
Sbjct: 187 PQTAVMREAEKLVDSGVKELLIISQDTSAYGVDWKDRNKAGDEKFPILNLSRDLSTLGAW 246

Query: 261 VRLRYTTSHPRDMSDCLIKAHGD-LDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           VRL Y   +P      LI    D  + L+PYL +P Q     +LK M R   A      I
Sbjct: 247 VRLHYVYPYPHVRE--LIPLMADPANGLLPYLDIPFQHAHPDVLKRMARPAAASRTLDEI 304

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
              R   P+I + S FIVG+PGET+ +F+  +D +D+    +   F+Y    G   + + 
Sbjct: 305 AAWRRDCPNITLRSTFIVGYPGETEAEFQTLLDWLDEAQLDRIGCFQYENVDGARSNALP 364

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG--KLVGRSPWLQS 437
           + V   VK +R     +K +    +   A VG+ ++VL++   +E    + V  +P +  
Sbjct: 365 DHVAPEVKQDRWDRFMEKAQAISEAKLQAKVGRTMQVLVDSVDEEGATCRTVADAPEIDG 424

Query: 438 VVLNSKNHN---IGDIIKVRITDVKISTLYGELV 468
            +   +  +    GD++ V + +     L+G+L 
Sbjct: 425 NLFIDEGFDGLTPGDLVTVEVDEASEYDLWGKLT 458


>gi|163744236|ref|ZP_02151596.1| RNA modification enzyme, MiaB-family, putative [Oceanibulbus
           indolifex HEL-45]
 gi|161381054|gb|EDQ05463.1| RNA modification enzyme, MiaB-family, putative [Oceanibulbus
           indolifex HEL-45]
          Length = 457

 Score =  151 bits (381), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 121/448 (27%), Positives = 205/448 (45%), Gaps = 40/448 (8%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC   + DS R+     ++GY        AD +++NTC   + A  +    +G     
Sbjct: 33  SLGCPKALVDSERILTRLRAEGYGVSPDYAGADAVIVNTCGFLDSAKAESLDAIGEA--- 89

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               +KE G   V+V GC+  AE + I    P +  V GP  Y    E +  A  G    
Sbjct: 90  ----LKENGK--VIVTGCLG-AEPDYIREHHPKILAVTGPHQY----EQVLDAVHGAVPP 138

Query: 151 DTDYSVED-KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209
             D  ++    +++S+    Y+       +L I EGC+  C FC++P  RG   SR    
Sbjct: 139 SPDPFIDLLPAQQVSLTPRHYS-------YLKISEGCNHKCKFCIIPDMRGRLQSRPAHA 191

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-------GEKCTFSDLLYSLSEIKGLVR 262
           V+ EA +L+DNGV E+ ++ Q+ +A+   G+D       G +   +DL   L  +   VR
Sbjct: 192 VMREAERLVDNGVKELLVISQDTSAY---GVDIKHAEDRGHRAHITDLARDLGSLGAWVR 248

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           L Y   +P       + A G   +++PYL +P Q     +LK M R   A +    I   
Sbjct: 249 LHYVYPYPHVRKLIPLMAEG---LVLPYLDIPFQHAHPDVLKRMARPAAASKTLDEIAAW 305

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R   PDI + S FIVG+PGET+ +F+  +D +D+    +   F+Y    G   + + + V
Sbjct: 306 RDTCPDITLRSTFIVGYPGETEAEFQTLLDWLDEAQLDRVGCFQYENVEGARSNALPDHV 365

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG--KLVGRSPWLQSVVL 440
              VK +R     +K +    +   A VG+ I+V++++  ++    +    +P +   + 
Sbjct: 366 PAEVKQDRWDRFMEKAQAISEAKLAAKVGKRIDVIVDEIDEDAATCRTKADAPEIDGNLF 425

Query: 441 ---NSKNHNIGDIIKVRITDVKISTLYG 465
              + +N  +GDI+ V + +     L+G
Sbjct: 426 IDEDFQNLKVGDIVTVEVEEAGEYDLWG 453


>gi|145220029|ref|YP_001130738.1| MiaB-like tRNA modifying enzyme YliG [Prosthecochloris vibrioformis
           DSM 265]
 gi|238066480|sp|A4SFH7|RIMO_PROVI RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|145206193|gb|ABP37236.1| SSU ribosomal protein S12P methylthiotransferase [Chlorobium
           phaeovibrioides DSM 265]
          Length = 434

 Score =  151 bits (381), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 131/455 (28%), Positives = 209/455 (45%), Gaps = 43/455 (9%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC-HIREKAAEKVYSFL 84
           R F+ S GC  N  DS R+     + G     S  DA+ I++NTC  I +   E +   L
Sbjct: 7   RVFLLSLGCSKNTVDSERLMAQAEAAGVVFTESASDAETIIINTCGFIADAKEESINETL 66

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             I   ++ R+++     + V GC+ +    E+    P V+   G +    LP +L    
Sbjct: 67  AAITEKESGRVRK-----IFVMGCLPELYRSELQTELPEVDGFFGTR---ELPAIL---- 114

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
                +   Y  E    R S+   G+      T+FL I EGC + C+FC +P  RG  IS
Sbjct: 115 ---TAIGARYRSELHLHR-SLTAPGH------TSFLKISEGCSRSCSFCSIPRIRGPYIS 164

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK-GLVRL 263
           + L Q++ EAR L + GV E+ ++ Q++  + G  L G +   +DLL  LS++    +RL
Sbjct: 165 QPLDQLLREARLLQEKGVQELNIIAQDITLY-GVDLYGRQ-MLNDLLLRLSDMAFHWIRL 222

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
            Y  ++P +    +I+       +  YL LP+Q  +DRIL+SMNR  T      +I+ IR
Sbjct: 223 LY--AYPLNFPLEVIETMSQRGNICNYLDLPLQHCNDRILRSMNRGITKEGELALIEAIR 280

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              PDI + +  I G+PGET  +F   ++    + + +   F Y     +P   + + V 
Sbjct: 281 QKNPDIRLRTTMIAGYPGETRQEFEELLEFAATVRFDRLGCFSYCHEEFSPAFALEDSVP 340

Query: 384 ENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV- 439
           E  K  R   L+ LQ+ + E++   N    G+ I V I++   E+    GR+ W    V 
Sbjct: 341 EEEKQSRTAELMELQEGISEEK---NKRLEGREIAVCIDR--IEENTAWGRTEWDAPEVD 395

Query: 440 ----LNSKNHNI--GDIIKVRITDVKISTLYGELV 468
               L    H I  G     RI       L+G ++
Sbjct: 396 NECSLEGAGHTIAPGSFCLARIDGSSPYELFGTVL 430


>gi|333024071|ref|ZP_08452135.1| hypothetical protein STTU_1575 [Streptomyces sp. Tu6071]
 gi|332743923|gb|EGJ74364.1| hypothetical protein STTU_1575 [Streptomyces sp. Tu6071]
          Length = 499

 Score =  151 bits (381), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 124/460 (26%), Positives = 195/460 (42%), Gaps = 62/460 (13%)

Query: 23  VPQRFFVK--SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKV 80
           +P+R  V   + GC  N  DS  +     + G++ V     AD+ V+NTC   E A +  
Sbjct: 1   MPERRTVALVTLGCARNEVDSEELAGRLEADGWDLVEDASHADVAVVNTCGFVEAAKKDS 60

Query: 81  YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140
              L    +LK      G    VV  GC+A+  G+++    P  + V+G   Y  + + L
Sbjct: 61  VDALLEANDLKG----HGRTQAVVAVGCMAERYGKDLAEALPEADGVLGFDDYADISDRL 116

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT----------------------- 177
           +    G   +   ++  D+ + L +         GV                        
Sbjct: 117 QTILSGG--IHASHTPRDRRKLLPLSPAARQDAPGVALPGHAQQAPEPEDVAPADLPDGL 174

Query: 178 -------------------AFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLI 218
                              A + +  GCD+ C+FC +P  RG  ISR  S V+ E R L 
Sbjct: 175 APASGPRAPLRRRLGTSPVASVKLASGCDRRCSFCAIPSFRGSFISRRPSDVLTETRWLA 234

Query: 219 DNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLI 278
           + GV E+ L+ +N N   GK L G+      LL  L+ + G+ R+R +   P +M   LI
Sbjct: 235 EQGVREVMLVSEN-NTSYGKDL-GDIRLLETLLPELAAVDGIERVRVSYLQPAEMRPGLI 292

Query: 279 KAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVG 338
                   + PY  L  Q  +  +L++M R      +  ++D+IR+  P+  + S+FIVG
Sbjct: 293 DVLTSTPKIAPYFDLSFQHSAAGVLRAMRRFGGTDSFLGLLDQIRAKAPEAGVRSNFIVG 352

Query: 339 FPGETDDDFRA-----TMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLC 393
           FPGET++D        T   +D IG      F YS   GT  +    ++DE V AERL  
Sbjct: 353 FPGETEEDVAELERFLTSARLDAIGV-----FGYSDEEGTEAATYATKLDEEVVAERLAR 407

Query: 394 LQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSP 433
           + +   E      +  +G+ +EVL+E    E    +GR P
Sbjct: 408 VSRLAEELTAQRAEERIGETMEVLVESAATEDEPALGRGP 447


>gi|313672567|ref|YP_004050678.1| miab-like tRNA modifying enzyme [Calditerrivibrio nitroreducens DSM
           19672]
 gi|312939323|gb|ADR18515.1| MiaB-like tRNA modifying enzyme [Calditerrivibrio nitroreducens DSM
           19672]
          Length = 415

 Score =  151 bits (381), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 103/395 (26%), Positives = 208/395 (52%), Gaps = 27/395 (6%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           ++GC++N+ ++  +++    +G++  +S++++D+IV+N+C + + A +K   +L +++  
Sbjct: 7   TFGCKVNLVETENLKEKANLEGFKYTDSIEESDVIVVNSCAVTDNAEKKSLHYLKKLK-- 64

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
                ++  +  +V+ GC+A+ + + I     +V  +   + +  + E   +      + 
Sbjct: 65  -----QKFPEKKIVLTGCLAEMKKDLIKDADILVTNIAKDEIFKYIKENKHQLT---PIN 116

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
           + DY  E      S  +   ++ RG   FL IQ+GCD FC++C++P  RG   S+S   +
Sbjct: 117 ELDYYKE------SFPNAIVDKTRG---FLKIQDGCDAFCSYCIIPNLRGKPRSKSEEII 167

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270
           + E  +L+D G  EI L+G ++  +   G+D        L   + +I G  R+R ++   
Sbjct: 168 IREFSQLVDKGFKEIVLVGIHIGKY---GIDTNTDLKKLLKKLI-QIDGNFRIRLSSLEL 223

Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330
            ++   +I+   + D +  +LH+P+Q  +++ILK MNR +T  ++   ++ ++S    + 
Sbjct: 224 NEIDQEMIEIILNSDKICKHLHIPLQGSTNKILKLMNRHYTFEKFASTVEYLKSRNEFLT 283

Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER 390
           I +D I GFPGET++DF    D + K+  +    F +S R GT  S + ++V   +K +R
Sbjct: 284 IGTDVITGFPGETEEDFTIGYDNLLKLPISYMHVFPFSERKGTKASILPDKVSNEIKKKR 343

Query: 391 LLCLQKKLREQQVSFNDA--CVGQIIEVLIEKHGK 423
              L + L E +  FN A    G + +VL EK  +
Sbjct: 344 SGML-RDLSESK-RFNSAKRLFGTVQKVLAEKDNR 376


>gi|312892376|ref|ZP_07751871.1| Protein of unknown function UPF0004 [Mucilaginibacter paludis DSM
           18603]
 gi|311295160|gb|EFQ72334.1| Protein of unknown function UPF0004 [Mucilaginibacter paludis DSM
           18603]
          Length = 301

 Score =  151 bits (381), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 80/216 (37%), Positives = 129/216 (59%), Gaps = 7/216 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ +++SYGC MN  DS  +  +   QG+E     ++AD+I +NTC IRE A ++V +  
Sbjct: 32  RKLYIESYGCAMNFSDSEIVASILLDQGFETTTDFNNADVIFINTCSIRENAEQRVRN-- 89

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R++  K ++ +  G ++V V GC+A+    + L    +V+VVVGP  Y  LP L+++  
Sbjct: 90  -RLKEFKVAKKRNPG-MVVGVLGCMAERLKSKFLEEEKLVDVVVGPDAYRDLPNLIDQVD 147

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G+R V+   S E+ +  ++ V    N   G+ AF++I  GCD  C+FCVVP+TRG E S
Sbjct: 148 SGQRAVNVLLSREETYADINPVRLNSN---GINAFVSIMRGCDNMCSFCVVPFTRGRERS 204

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL 240
           R    +V E   L + G  E+TLLGQNV++++ + L
Sbjct: 205 RDAISIVKECTDLFNQGYREVTLLGQNVDSYKWEPL 240


>gi|332300096|ref|YP_004442017.1| MiaB-like tRNA modifying enzyme [Porphyromonas asaccharolytica DSM
           20707]
 gi|332177159|gb|AEE12849.1| MiaB-like tRNA modifying enzyme [Porphyromonas asaccharolytica DSM
           20707]
          Length = 454

 Score =  150 bits (380), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 110/420 (26%), Positives = 203/420 (48%), Gaps = 36/420 (8%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDD------ADLIVLNTCHIREK 75
           +V +R    + GC++N  ++  +     + G ER++           D+ ++N+C + + 
Sbjct: 10  LVGKRAAFYTLGCRLNYAETSTIARQLATVGVERISDEHHHTTEVVPDICIVNSCSVTDT 69

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135
           A +K  S + R+        +E  + L+VV GC AQ +GE+I +  P V++VVG      
Sbjct: 70  ADKKCRSLINRLH-------REYPEALIVVTGCYAQLQGEQIAQ-MPGVDLVVGSGRKSE 121

Query: 136 LPELL-------ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
           +  LL        + R   +V     +   + +         +R R    FL +Q+GC+ 
Sbjct: 122 IVSLLTELYQKRNQERTQPQVATPHVTARRELQHFEPSVSSDDRTRH---FLKVQDGCNY 178

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS 248
           +CT+C +P  RGI  + S++ +V +A ++ + G  EI L G N+  + G+   GE  T  
Sbjct: 179 YCTYCTIPAARGISRNGSIASLVAQAERVAELGGKEIILTGVNIGDF-GR-TTGE--TLL 234

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
           +LL+ L+++ G+ R R  +  P  ++  +I+   +    MP+ H+P+QSGSD++L+ M R
Sbjct: 235 ELLHQLTQVAGIARYRIGSIEPELLTPEIIQFVAETAQFMPHFHIPLQSGSDQVLRLMRR 294

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
            +    + + +  I  + PD  +  D I G  GE  +    T+  + +  ++Q   F YS
Sbjct: 295 HYDTALFAERLKLIYELIPDAFVGIDVIAGMRGELSEHHAETLAFLKEQPWSQLHVFPYS 354

Query: 369 PRLGTPGSNMLEQV---DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE--KHGK 423
            R GT    +   V   ++ ++ + LL L     E+  +F     G +  VL E  +HG+
Sbjct: 355 ERKGTKALEIKPAVPAAEKKLRTQELLALSS---ERHNAFCAPFTGSVRPVLWEETRHGE 411


>gi|332298374|ref|YP_004440296.1| MiaB-like tRNA modifying enzyme [Treponema brennaborense DSM 12168]
 gi|332181477|gb|AEE17165.1| MiaB-like tRNA modifying enzyme [Treponema brennaborense DSM 12168]
          Length = 515

 Score =  150 bits (380), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 131/481 (27%), Positives = 215/481 (44%), Gaps = 60/481 (12%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYE-------RVNSMDDADLIVLNTCHIREK 75
           VP     ++ GC++N  +S      F   G+          ++   A L V+NTC +  K
Sbjct: 23  VPPAVHFETLGCKLNQIESESAARYFSDAGFTVDMEPATAADAPGAAVLCVVNTCTVTGK 82

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGP--QTY 133
           A +K        R +    +++  +  V+V GC A+ +  ++      V V+ G    T 
Sbjct: 83  AEQKA-------RRVIRLLLRKYENAAVLVTGCYAELDAPQLAAIDGRVCVLPGSLKDTL 135

Query: 134 YRLPELL-----------ERARFGKRVVDTDYS----VEDKFERLSIVDGGYNRKRGVTA 178
             +P              E A F +R V  + S    V     RL+  D  +   R   A
Sbjct: 136 ADIPARFRSFIAADVTASECAAFLRRAVAAEKSAGGAVYTPTFRLA-TDTFFTHSR---A 191

Query: 179 FLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK 238
            + IQ+GC+  CT+C +   RG  +S   + V++  R +      E+ L G N++ +RG 
Sbjct: 192 SIKIQDGCNNACTYCRIHLARGKAVSLDAASVLERVRSIEARNQHEVVLTGVNLSQYRGS 251

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSD--CLIKAHGDLDVLMPYLHLPVQ 296
                    + LL  L +    +R R ++ +P  + D  C + AH   + +MP+ HL VQ
Sbjct: 252 -FGSFFLDIAGLLRFLLDNTERIRFRLSSLYPERVDDALCEVIAH---ERIMPHFHLSVQ 307

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
           SGSDRIL  M R +T+ +    ++R+R+V+ +  I+ D I GFPGE+DDDF  TM+L   
Sbjct: 308 SGSDRILTLMRRPYTSADVAAAVERLRAVKRNPFIACDIIAGFPGESDDDFGQTMELCRS 367

Query: 357 IGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEV 416
             +A   +F +SPR GTP   M   V ++  A R+  L +     + ++  +  G ++  
Sbjct: 368 CRFAWIHAFPFSPRPGTPAYAMKPVVPQSTAAHRVRRLTEFAIASKCAYISSYKGTVVSA 427

Query: 417 LIEKHGKEK-------------GKLVGRSPWLQSVVLN------SKNHNIGDIIKVRITD 457
           + E++ K++             G    RSP   +V  N        +   G  I VRITD
Sbjct: 428 ITEQNRKDRKAAFETTAADDAGGARTVRSPVTHAVTSNFIHVELPGSFAPGSRIAVRITD 487

Query: 458 V 458
            
Sbjct: 488 A 488


>gi|84496907|ref|ZP_00995761.1| hypothetical protein JNB_05270 [Janibacter sp. HTCC2649]
 gi|84383675|gb|EAP99556.1| hypothetical protein JNB_05270 [Janibacter sp. HTCC2649]
          Length = 466

 Score =  150 bits (380), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 123/420 (29%), Positives = 192/420 (45%), Gaps = 23/420 (5%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V + GC  N  DS  +     + G+  V+   +AD+ V+NTC   E+A +     L    
Sbjct: 13  VVTLGCTRNDVDSEELAGRLKAGGWTLVDDASEADVAVVNTCGFVEQAKKDSIDSL---- 68

Query: 89  NLKNSRIKEGGDLLVVVA-GCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147
            ++ S +KE G    VVA GC+A+  G+ +    P  + V+G  +Y  +   L     G 
Sbjct: 69  -IEASALKETGRTQKVVAVGCLAERYGQTLADELPEADAVLGFDSYADMSTHLRTILDGG 127

Query: 148 RVVDTDYSVEDKFERLSIVD----------GGYNRKR-----GVTAFLTIQEGCDKFCTF 192
            V     S   K   LS V            G++  R     G  A L I  GCD+ C F
Sbjct: 128 TVKSHVPSDRRKLLPLSPVTRQEASADVALPGHSAPRARLDSGPWAPLKIASGCDRRCAF 187

Query: 193 CVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLY 252
           C +P  RG  +SR  + V++EAR L   GV E+ L+ +N  ++ GK L G+      LL 
Sbjct: 188 CAIPMFRGSFVSRRPTDVIEEARWLATQGVRELFLVSENSTSY-GKDL-GDLALMDALLP 245

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
            L++I G+ R+R +   P ++   L+ A   +  +MP+  L  Q  S  +L+ M R    
Sbjct: 246 ELADIDGIERVRVSYLQPAEVRPGLLDAMVAIPEVMPWFDLSFQHASAPLLRRMRRFGGT 305

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
             +  +ID +R   P   I S+ IVGFPGET+ +       +          F YS   G
Sbjct: 306 EPFLGLIDDVRRRSPLAGIRSNVIVGFPGETEAEVDELAQFLTAARLDVVGVFGYSDEDG 365

Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS 432
           T G  +  +VD    A+R+  +   + E      +  +G+ + VLIE+   E G ++GR+
Sbjct: 366 TEGELLPNKVDAQDIADRVARITDLIEELTTQRAEDRIGESVRVLIEEVDDETGDVIGRA 425


>gi|220920232|ref|YP_002495533.1| MiaB-like tRNA modifying enzyme [Methylobacterium nodulans ORS
           2060]
 gi|219944838|gb|ACL55230.1| MiaB-like tRNA modifying enzyme [Methylobacterium nodulans ORS
           2060]
          Length = 412

 Score =  150 bits (380), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 113/353 (32%), Positives = 166/353 (47%), Gaps = 28/353 (7%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL-GRI 87
           V S+GC++N       E     +  E        DL+V+NTC +  +A  +    + G  
Sbjct: 5   VLSFGCRLNTA-----EGEVLRRAAE--TGRPGEDLVVVNTCAVTAEATRQARKAIRGAA 57

Query: 88  RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147
           R    +RI        VV GC AQ E        P V  ++G   + +L       R G 
Sbjct: 58  RRTPGARI--------VVTGCGAQVE-TAAYAAMPEVAAIIG--NHAKLSPAAWADRAGG 106

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVT-AFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           RV      VED             R  G T A L +Q GCD  CTFCV+P+ RG   S  
Sbjct: 107 RV-----RVEDIMAVREAAAAPTPRMPGRTRAVLPVQNGCDHRCTFCVIPFGRGPSRSLP 161

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS-LSEIKGLVRLRY 265
           + + + +AR L+++G  E+ L G ++ A+ G+ L  E  +   L+ + L  +  L RLR 
Sbjct: 162 VQEAIAQARALVEDGAREVVLTGVDLTAY-GRDLP-EAPSLGGLVKAILRALPDLDRLRL 219

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
           ++    +    L+ A      LMP+LHL +Q+G D ILK M RRH   +     + +R +
Sbjct: 220 SSIDSVEADADLLDALASERRLMPHLHLSLQAGDDLILKRMKRRHARADAIAFCETVRRL 279

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           RP+I   +D I GFP ET+  F  ++ LV++ G A    F YSPR  TP + M
Sbjct: 280 RPEIVFGADLIAGFPTETEAQFGRSVALVEECGLAHLHVFPYSPRPETPAARM 332


>gi|300176745|emb|CBK24410.2| unnamed protein product [Blastocystis hominis]
          Length = 507

 Score =  150 bits (380), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 103/386 (26%), Positives = 189/386 (48%), Gaps = 40/386 (10%)

Query: 17  IVDQCIVPQRF--FVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIRE 74
           +   CI+P+++  ++ ++GC  N  D   M+ +    G++   + D+A L VLN+C +++
Sbjct: 42  VAGDCIIPEKYKLWIITFGCAHNFADGEYMKGILSDYGFQFAENRDEASLWVLNSCTVKD 101

Query: 75  KAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYY 134
            +     +++   +  KN         +VVVAGCV QA+ +    R      ++G +  +
Sbjct: 102 PSEIVFRNYVTEAKE-KNK--------MVVVAGCVPQADSDASWLRD---LSILGVKQIH 149

Query: 135 RLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCV 194
           R+ E++E    G  +           + L  +D    R+      + I EGC   CT+C 
Sbjct: 150 RIVEVVEETLKGNTIHLLS------LKELPPLDLPKIRRDPHIEIVPISEGCLGHCTYCK 203

Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL 254
             Y RG  +S  L  +++  R   D  V E+ L  ++  A+   G+D    + +DLL  +
Sbjct: 204 TQYARGKLMSYPLQSIINRLRAAFDEHVFEVWLSSEDTGAY---GID-RGLSIADLLKEI 259

Query: 255 SEI-----KGLVRL-----RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304
             +       +VRL      Y  SH ++++  L   +     +  ++H+PVQSGS+ +L 
Sbjct: 260 PSVIPDQSNTMVRLGMTNPPYVLSHLKEVAAFLRHPN-----VFSFIHIPVQSGSNAVLN 314

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
           +M R++T  ++  I+D +    P + I++D I+GF  ETD+D + TMDL+ K  +     
Sbjct: 315 TMQRQYTVEQFTSIVDYLLKEVPGLTIATDIIIGFASETDEDHKQTMDLLKKYQFPVVNI 374

Query: 365 FKYSPRLGTPGSNMLEQVDENVKAER 390
            K+ PR GTP + M + +  ++  ER
Sbjct: 375 SKFFPRPGTPAARM-KHISSSIVKER 399


>gi|282858818|ref|ZP_06267963.1| MiaB-like protein [Prevotella bivia JCVIHMP010]
 gi|282588387|gb|EFB93547.1| MiaB-like protein [Prevotella bivia JCVIHMP010]
          Length = 450

 Score =  150 bits (380), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 129/452 (28%), Positives = 207/452 (45%), Gaps = 45/452 (9%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEK----VYSFL 84
           + GC  N+ DS  +   F + G+E  +  +  + ++ V+NTC   E A E+    +  F+
Sbjct: 28  TMGCSKNLVDSELLMKQFEANGFECTHDTEQPEGEIAVINTCGFIETAKEESINTILEFV 87

Query: 85  GRIRNLKNSRIKEGGDL-LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
            R         KE G L  + V GC++Q   +E+ +  P V+   G   Y +L       
Sbjct: 88  NR---------KEKGQLNKLFVMGCLSQRYKDELEKEIPEVDKFYGKFNYKQL-----LT 133

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             GK  V +   V     R       Y       A++ I EGCD+ C +C +P   G   
Sbjct: 134 DLGKADVTSCNGV-----RHLTTPRHY-------AYIKIAEGCDRHCAYCAIPLITGKHR 181

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR +  ++ E  +L+  GV E  ++ Q +  + G  LDG K   ++L+  +++IKG+  +
Sbjct: 182 SRKMEDILQEVEQLVAQGVKEFQVIEQELTYY-GVDLDG-KHHITELISRMADIKGVEWI 239

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R   ++P      L+        +  YL +  Q  SD +L  M+R  +  E   +I  IR
Sbjct: 240 RLHYAYPNQFPFDLLDVIAQKPNVCKYLDIAFQHISDHMLDRMHRHVSKQETINLIKEIR 299

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE-QV 382
           S  P I + +  +VGFPGETD+DF    D V ++ + +  +F YS   GT  +   E  V
Sbjct: 300 SRVPSIHLRTTLLVGFPGETDEDFEELKDFVREVRFERMGAFAYSREEGTYSAEHYEDDV 359

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSV 438
            E VK +RL  L    +E      +  +GQ  +V+I++  +E    +GR    SP +   
Sbjct: 360 PEEVKQQRLDELMAIQQEISTELEETKIGQTFKVIIDR--EEGDYYIGRTEFCSPDVDPE 417

Query: 439 VLNSKNH---NIGDIIKVRITDVKISTLYGEL 467
           VL S       +G+   V ITD     LYGE+
Sbjct: 418 VLISIGEVPLRVGEFYNVYITDSDEFDLYGEV 449


>gi|68445550|dbj|BAE03259.1| hypothetical conserved protein [unclutured Candidatus Nitrosocaldus
           sp.]
          Length = 454

 Score =  150 bits (380), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 131/470 (27%), Positives = 220/470 (46%), Gaps = 52/470 (11%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + +++ YGC  ++ D   +  +   +GYE  ++ D+AD  ++ TC +++  A ++     
Sbjct: 9   KVWLEVYGCSSSLSDGEIIAGIIVGKGYELASNFDEADASIIVTCVVKDATANRMVE--- 65

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                   RIK      +VVAGC+A+AE   I R +P  ++V GP    R+   L  A  
Sbjct: 66  --------RIKRLSSKPLVVAGCMAKAEPNRIRRFNPRASIV-GPNAIDRVDTALASALD 116

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           GK +V  D S++        V     R   V + + I  GC   CTFC     +G   S 
Sbjct: 117 GKGIVLLDGSMQK-------VGLPKIRVNPVISMVQIGSGCLSECTFCETRIAKGRLTSY 169

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            +  +V + R+ ++ G  E+ L   +  A+ G+ +        +L+ ++  I     +R 
Sbjct: 170 RIGDIVRQVREDVEQGCREVWLTSTDNGAY-GRDI---GTNLVELIKAVCSIDAEFMIRV 225

Query: 266 TTSHPRD---MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
              +P+    M D LI+A+ D D +  ++H+PVQSGSDR+L+ M R H A  +  ++ R 
Sbjct: 226 GMMNPQYLPLMLDDLIEAYRD-DKVFKFIHIPVQSGSDRVLRLMRRGHRASTFIDMVKRF 284

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R       I++D IVGFP E+++DF A++DL+ ++        KYS R GT  S M EQ+
Sbjct: 285 RRELKLCTIATDMIVGFPSESEEDFDASIDLLLEVEPDIVNVSKYSARPGTEASRM-EQL 343

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL-- 440
            + V  ER   +   +     S N A  G    VL+++     G + GR+   + + L  
Sbjct: 344 SKQVINERSKVMHDVVSRVCYSRNLAWKGWEGTVLVDELTDAGGGVQGRNFAYKPIYLIR 403

Query: 441 ---------------NSKNHNI-------GDIIKVRITDVKISTLYGELV 468
                          NS N+++       G  I+VRI  V   +L G ++
Sbjct: 404 KGRADNNYDDYSNGHNSFNNDVNNARRLLGSWIRVRIDRVTTHSLVGSII 453


>gi|298373586|ref|ZP_06983575.1| Fe-S oxidoreductase [Bacteroidetes oral taxon 274 str. F0058]
 gi|298274638|gb|EFI16190.1| Fe-S oxidoreductase [Bacteroidetes oral taxon 274 str. F0058]
          Length = 417

 Score =  150 bits (379), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 106/378 (28%), Positives = 183/378 (48%), Gaps = 21/378 (5%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N  ++  +  +  + G+      + AD+ ++NTC + + A +K    + +I + 
Sbjct: 8   TLGCKLNFAETSYIGRLLVANGFSIAGKGEKADVCIVNTCSVTDTADKKCRQAIHKISSA 67

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYY---RLPELLERARFGK 147
                    +  V+V GC AQ    E+  +   V++V+G +  +   ++   LE      
Sbjct: 68  -------NPNAFVIVTGCYAQINPAEV-EQIEGVDLVLGAKEKFDILKIMHSLESKEQFD 119

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
           RV   +    + FE   I   G +R R    FL +Q+GC+ +CT+C +P+ RG   S S+
Sbjct: 120 RVQVANIRDNNFFE--PIFSAG-DRTR---YFLKVQDGCNYYCTYCTIPFARGKSRSASV 173

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
           +  +D  R+ I  G  EI L G N+    G   +G    F DL+ ++ ++   VR R ++
Sbjct: 174 AVTMDTIRRAIAEGAREIILTGVNI----GDFGNGSSERFIDLVRNIDDMTDEVRFRISS 229

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
             P  + D +I+       + P+ H+P+QSGS+R+L+ M RR+T   + Q +  I+S+ P
Sbjct: 230 VEPNLLEDDIIRLIAHSRRIAPHFHIPLQSGSNRVLELMQRRYTREIFAQKVATIKSLMP 289

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
              I  D IVG  GET D F  T+  + +  +++   F YS R GT   N+   V    K
Sbjct: 290 HAFIGVDVIVGMRGETPDMFDETVQFLAETPFSELHIFPYSEREGTRALNISPVVSVQEK 349

Query: 388 AERLLCLQKKLREQQVSF 405
             R   L +  +E    F
Sbjct: 350 KRRSEILHRMSQEHVEEF 367


>gi|308809904|ref|XP_003082261.1| Predicted Fe-S oxidoreductase (ISS) [Ostreococcus tauri]
 gi|116060729|emb|CAL57207.1| Predicted Fe-S oxidoreductase (ISS) [Ostreococcus tauri]
          Length = 440

 Score =  150 bits (379), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 119/445 (26%), Positives = 198/445 (44%), Gaps = 66/445 (14%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R  + S GC  N  D   +     + G+E  +  + AD I++N+C   E A  +    + 
Sbjct: 12  RVSMVSLGCPKNTVDGEVILGDLHANGFEITDDHEAADAIIINSCGFVEDAKNESVEAIL 71

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPE------- 138
               L+    +   D  ++V GC+AQ    ++    P  +V+VG + Y  LP        
Sbjct: 72  EAAKLRTESGR--SDTKIIVTGCLAQRYANDLANELPEADVIVGFENYGNLPRTVGGALG 129

Query: 139 --------LLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190
                   L ++AR   +V        ++ +RL I    Y       A+L + EGCD  C
Sbjct: 130 VEATPGVLLPQQARV--QVGGASPPFREETKRLRITPRHY-------AYLRVAEGCDHKC 180

Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD---GEKCTF 247
           TFC +P  RG   S+    +VDEA+ L D+GV E+ L+ ++ N W   G+D    +    
Sbjct: 181 TFCAIPSFRGRFRSKPFGAIVDEAKALADSGVRELNLIAEDTNQW---GMDLRASDGRGL 237

Query: 248 SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307
           ++LLY+L+E+ G+  +R   ++P   SD LI+A                           
Sbjct: 238 AELLYALAEVDGIEWMRILYAYPSYFSDELIQAI-------------------------- 271

Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           R        ++ DRI    P +A+ + FI GFPGET+++    M       + +  +F Y
Sbjct: 272 RTXXXXXXXKLRDRI----PGLALRTTFISGFPGETEEEHNELMQFCRDFKFERLGAFAY 327

Query: 368 SPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK 427
           S   GTP     +QV E+V+A R   L  + +E    F  + VG+ ++VLI+    +   
Sbjct: 328 SEEDGTPAMEYPDQVPEDVRAFRRDQLVSQQQEISEDFAMSRVGKDVDVLIDSWDDDMQA 387

Query: 428 LVGRS----PWLQSVVLNSKNHNIG 448
            +GR+    P +  VV  +++ + G
Sbjct: 388 FIGRTTLEAPDIDPVVFVTEDESKG 412


>gi|307565379|ref|ZP_07627870.1| MiaB-like protein [Prevotella amnii CRIS 21A-A]
 gi|307345911|gb|EFN91257.1| MiaB-like protein [Prevotella amnii CRIS 21A-A]
          Length = 452

 Score =  150 bits (379), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 110/404 (27%), Positives = 188/404 (46%), Gaps = 22/404 (5%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N  ++       ++ G       + AD++++NTC + + A  K        R +
Sbjct: 16  TLGCKLNFSETSTFARTLYNMGVREAKKNEIADIVLINTCSVTDVADHKC-------RQI 68

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG---K 147
            N  +++     V+V GC AQ E + I      V++V+G      L + L  A      K
Sbjct: 69  INRMVRQNPGAFVIVTGCYAQLESQTIANIIG-VDLVLGSNEKANLIQYLSNAWNNIEEK 127

Query: 148 RVVDTD-----YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
             +D       ++V+ K   ++      +R      FL +Q+GC+ FCT+C +PY RG  
Sbjct: 128 TPIDNTQKKIYHTVKTK--DITSFQDSCSRGNRTRYFLKVQDGCNYFCTYCTIPYARGFS 185

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            +  +  +V +A + +  G  EI L G N+  + G+  +    +F DL+ +L  +KG+ R
Sbjct: 186 RNPPIKSLVKQAEEAVAEGGREIVLTGVNIGDF-GRTTNE---SFLDLVKALDNVKGIER 241

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
            R ++  P  + D LI+     +  MP+ H+P+QSGSD +LK M+R +    +   I  I
Sbjct: 242 YRISSLEPDLIDDDLIEYCATSEHFMPHFHIPLQSGSDEVLKLMHRHYDRALFADKILLI 301

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           +   P+  I  D +VG  GE  + F  + + +D +   Q   F YS R GT   ++   V
Sbjct: 302 KERMPNAFIGVDVMVGCRGEKPEFFEDSYNFIDSLPITQLHVFPYSERPGTSALSIPYIV 361

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG 426
           D   K  R   L K    +  +F    +G+   VL EK  + K 
Sbjct: 362 DPREKKHRANRLLKLSDLKTQTFYAKYIGKEANVLFEKAARGKS 405


>gi|241558622|ref|XP_002400268.1| conserved hypothetical protein [Ixodes scapularis]
 gi|215499750|gb|EEC09244.1| conserved hypothetical protein [Ixodes scapularis]
          Length = 460

 Score =  150 bits (379), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 132/427 (30%), Positives = 208/427 (48%), Gaps = 41/427 (9%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
            + +VK++GC  N  DS  M     ++GY  V     ADL +LN+C ++  A +    F 
Sbjct: 56  HKIYVKTWGCAHNSSDSEYMAGQLAAKGYSIVEDASSADLWLLNSCTVKNPAEDH---FR 112

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGE-EILRRSPIVNVVVGPQTYYRLPELLERA 143
           G I    +S +++G    VV AGCV+QA    E L+   +V V    Q   R+ E++E  
Sbjct: 113 GAI----DSGLRQGKK--VVAAGCVSQATPNVEYLKGLSVVGV----QQTDRIVEVVEET 162

Query: 144 RFGK--RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
             G   R++ +      K    ++      R+  +   + I  GC   CT+C   + RG 
Sbjct: 163 LKGNSVRLLGSKKDGRRKAGGAALTLPKI-RRNPLVEIIAINTGCLNHCTYCKTKHARGD 221

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK--- 258
             S S+ ++V  A++    GV EI L  ++  A+ G+ + GE  T  DLL  +  +    
Sbjct: 222 LGSYSIEELVARAKQAFQEGVREIWLTSEDTGAY-GRDI-GE--TLPDLLREMVAVVPEG 277

Query: 259 -----GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
                G+    Y   +  DM++ L         +  +LH+PVQSGSD +L  M R +TA 
Sbjct: 278 CMLRLGMTNPPYILDYLEDMAEILSHPR-----VYSFLHVPVQSGSDPVLAEMKREYTAA 332

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
           ++R +ID +R   P I I++D I GFP ET++DF  TM LV +  +   F  ++ PR GT
Sbjct: 333 QFRIVIDFLRKAVPGITIATDIICGFPTETEEDFEETMALVREYRFPSLFINQFYPRPGT 392

Query: 374 PGSNMLEQVDENVKAERLLCLQKKLRE--QQVSFNDACVGQIIEVLIEKHGKEKGKLVGR 431
           P + M +++  +V  ER     K+L E  Q     D  VGQ   VL+ +   +K  LVG 
Sbjct: 393 PAAKM-KRIPTHVVKER----TKRLSELFQSYQTYDGRVGQRQAVLVTEVAHDKKHLVGH 447

Query: 432 SPWLQSV 438
           + + + V
Sbjct: 448 NKFYEQV 454


>gi|193215368|ref|YP_001996567.1| MiaB-like tRNA modifying enzyme YliG [Chloroherpeton thalassium
           ATCC 35110]
 gi|238065325|sp|B3QSS3|RIMO_CHLT3 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|193088845|gb|ACF14120.1| MiaB-like tRNA modifying enzyme YliG [Chloroherpeton thalassium
           ATCC 35110]
          Length = 434

 Score =  150 bits (379), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 124/456 (27%), Positives = 216/456 (47%), Gaps = 40/456 (8%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA-EKVYSFL 84
           + ++ + GC  N+ DS  +     +          +AD I++NTC   +K+  E +   L
Sbjct: 7   KLYLLTLGCSKNMVDSEVLLAQAKANQIYLAEDFHEADTILINTCGFIDKSKQESIDQIL 66

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             IR  +  RIK+     V+V GC+++   + +    P V+   G +    L +++  A 
Sbjct: 67  EAIRFKEAKRIKK-----VIVFGCLSERYKDALREEIPEVDCYFGTRD---LSQII--AE 116

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G       Y      ER  +    +       ++L I EGCD  C FC +P  RG ++S
Sbjct: 117 LGGH-----YKTHLLGERELLTPPYF-------SYLKISEGCDHPCAFCAIPLMRGKQVS 164

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK-GLVRL 263
           R + +++ EA+KL + GV E+ L+ Q+   + G  L+G++   ++LL  LS+++   +RL
Sbjct: 165 RPIDELLLEAKKLKEKGVRELCLIAQDTTYY-GHDLNGKR-QLAELLQRLSDLQFDWIRL 222

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
            Y  ++P      ++    + + +  YL LP+Q  SD +LKSM R  +  +  ++I +IR
Sbjct: 223 LY--AYPAMFPTDILPVMRERENICKYLDLPLQHVSDEMLKSMRRGISKRKTTELIAQIR 280

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           S  P I + +  +VG+P ET++ F   ++ V +  + +   F YS   GT    + + + 
Sbjct: 281 SEVPGIRLRTTMLVGYPNETEEQFSELVEFVRETQFDRLGCFAYSHEEGTEAHELPDTLT 340

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS- 442
           E  K  R+  L     E   + N A VG  + VLIE+   E    +GR+ +    V N  
Sbjct: 341 EEEKERRVELLMAAQEEIAYAKNQALVGSFMPVLIERF--EANFAIGRTEYDAPEVDNEV 398

Query: 443 ---------KNHNIGDIIKVRITDVKISTLYGELVV 469
                    K   +G   + RITD +   L+G LV+
Sbjct: 399 VIALDEAEQKKVKVGTFYQARITDAEAFDLFGSLVL 434


>gi|332296067|ref|YP_004437990.1| Ribosomal protein S12 methylthiotransferase rimO [Thermodesulfobium
           narugense DSM 14796]
 gi|332179170|gb|AEE14859.1| Ribosomal protein S12 methylthiotransferase rimO [Thermodesulfobium
           narugense DSM 14796]
          Length = 437

 Score =  150 bits (379), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 126/450 (28%), Positives = 209/450 (46%), Gaps = 36/450 (8%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC-HIREKAAEKVYSFLGRIRN 89
           S GC  N  D   +   F +        ++ AD +++NTC  IR+   E + + L  I N
Sbjct: 11  SLGCPKNEVDLQYLLGKFETYNCFLTFDLNVADYVLINTCSFIRKAKQEAISTILDLIEN 70

Query: 90  LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149
            KN + K      ++V GC+     E ++   P VN  + P              FGK +
Sbjct: 71  KKNFKYK------IIVGGCLVSLYKESLIELFPEVNAFLEPG-----------KSFGKEI 113

Query: 150 VD--TDYSVEDKFERLSIVDGGYNRKRGVT---AFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            +      + + FE     +   NR+  +     +L I +GC + C++C++P  RG   S
Sbjct: 114 FEYLDKNEIYNNFEN-EFCNDNENRRFFIERPYEYLKIADGCSRKCSYCLIPKIRGPYYS 172

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
                ++++A+ L   G  EI L+ Q+V  +   GLD +   F  LL  L  I+ +  +R
Sbjct: 173 YDRKFLLEQAKDLALKGKREIILVAQDVTYY---GLDRKDSLFK-LLEGLEAIEEIKWIR 228

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
               +P  ++  +IK   +   ++PY  +P+Q  S+++L+ M R   + ++ ++ID IR 
Sbjct: 229 LMYLYPDLLNKDIIKFVSESRKVLPYFDIPMQHASEKVLRYMRRNPDSEKFLRLIDSIRE 288

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             PD  I S FIVG PGE + +F   ++ ++KI    A  F YS    T   +M  QV  
Sbjct: 289 NIPDSVIRSTFIVGHPGEDEKEFDKLVNFLEKIKLNWAGFFSYSREEDTLSYSMDNQVKY 348

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVV- 439
             K  RL  +Q   +   + +  + VG+  EVL+E    +    VGRS    P + S + 
Sbjct: 349 VEKKNRLKIIQSIQQNITLKWRQSLVGKSFEVLVENDLNKYN--VGRSFMEAPDIDSFIR 406

Query: 440 -LNSKNHNIGDIIKVRITDVKISTLYGELV 468
              S+   IGD +++ IT  K   L GEL+
Sbjct: 407 FRGSEKVEIGDFVRILITKNKGFKLEGELI 436


>gi|305667743|ref|YP_003864030.1| putative Fe-S oxidoreductase [Maribacter sp. HTCC2170]
 gi|88707580|gb|EAQ99822.1| putative Fe-S oxidoreductase [Maribacter sp. HTCC2170]
          Length = 405

 Score =  150 bits (379), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 124/422 (29%), Positives = 204/422 (48%), Gaps = 44/422 (10%)

Query: 60  DDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDL-LVVVAGCVAQAEGEEIL 118
           ++ +++V+NTC   + A E+  + +     L+    KE G++  V V GC+++    ++ 
Sbjct: 15  EEGNVVVINTCGFIDNAKEESVNTI-----LQFVEKKEAGEVDKVFVTGCLSERYKPDLQ 69

Query: 119 RRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTA 178
           +  P V+   G      LP LL       + +  DY  E   ERL+     Y       A
Sbjct: 70  KEIPNVDEYFGTS---ELPNLL-------KALGADYKHELIGERLTTTPKNY-------A 112

Query: 179 FLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK 238
           +L I EGCD+ C+FC +P  RG   S+ + ++V E++KL   GV E+ L+ Q++  +   
Sbjct: 113 YLKIAEGCDRPCSFCAIPLMRGKHKSKPIEELVTESKKLAAKGVKELILIAQDLTYY--- 169

Query: 239 GLD-GEKCTFSDLLYSLSEIKGL--VRLRYT--TSHPRDMSDCLIKAHGDLDVLMPYLHL 293
           GLD  +K   + LL  L ++ G+  +RL Y   T  P D+ D +     D   +  YL +
Sbjct: 170 GLDLYKKRNLAVLLQKLVKVDGIEWIRLHYAFPTGFPMDVLDVM----NDEPKICNYLDI 225

Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
           P+Q  SD ILKSM R  T  +  ++I   R+  P +AI +  IVG+PGET+  F+     
Sbjct: 226 PLQHISDDILKSMRRGTTQEKTTRLIQEFRNHVPSMAIRTTLIVGYPGETEAHFQNLKKW 285

Query: 354 VDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQI 413
           V ++ + +   F YS    T   N+++ V + VK ER   + +   +     N   +G+ 
Sbjct: 286 VGEMRFERLGCFTYSHEENTHAYNLVDDVPQEVKQERANEIMELQSQISWELNQEKIGKT 345

Query: 414 IEVLIEKHGKEKGKLVGR----SPWLQSVVLNSKNH---NIGDIIKVRITDVKISTLYGE 466
              +I++  KE    VGR    SP + + VL          G+  +++I D     LYGE
Sbjct: 346 FNCIIDR--KEGNHFVGRTEFDSPDVDNEVLIDAAKFYLKQGEFAQIKIVDAADFDLYGE 403

Query: 467 LV 468
            V
Sbjct: 404 PV 405


>gi|257791396|ref|YP_003182002.1| MiaB-like tRNA modifying enzyme [Eggerthella lenta DSM 2243]
 gi|257475293|gb|ACV55613.1| MiaB-like tRNA modifying enzyme [Eggerthella lenta DSM 2243]
          Length = 410

 Score =  150 bits (379), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 121/413 (29%), Positives = 188/413 (45%), Gaps = 48/413 (11%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           F V + GC++N  +S         +G E   S   ADLIV+NTC +  +A +K    + R
Sbjct: 3   FAVVNLGCKVNRVESDDAAARLALRGVE--TSEASADLIVVNTCTVTGEAEKKTRKAVRR 60

Query: 87  -IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +R   ++R        V+V GC A  +          V+VV   Q    +  L + A F
Sbjct: 61  ALRANDHAR--------VLVTGCAAAIDAAFYEALDERVSVVGKAQLAQAIDALFDEAPF 112

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                  D  +         +  G+  + GV     +Q+GCD  CT+C+V   RG   SR
Sbjct: 113 SP---GEDAPLH--------IGSGFRTRVGVK----VQDGCDNACTYCIVHVARGRATSR 157

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDL--------------- 250
               VV E       G  EI L G N+ ++     DG +   S +               
Sbjct: 158 PADDVVRECASYARAGAREIVLTGINLGSY----CDGGRRDPSAIRLAALLRRLLDETAD 213

Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLD-VLMPYLHLPVQSGSDRILKSMNRR 309
           L++  E     R R ++  PRD+ D LI      D  +  +LHLP+Q+GS ++L+ M R 
Sbjct: 214 LHAPGEAPA--RFRVSSIEPRDVDDALIDLLASADGRVCRHLHLPLQAGSSKVLREMARP 271

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369
           + A  +  +++R+    P +A+S+D I GFPGETD +F+ T+D+     +A+  +F YSP
Sbjct: 272 YDAERFVALVERLYRRIPQLALSTDIIAGFPGETDAEFQETLDVARACRFAKIHAFPYSP 331

Query: 370 RLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422
           R+GTP +   +QV   VK  R   L+    E + S      G +   L+E+ G
Sbjct: 332 RIGTPAAERADQVPPAVKEARAAMLRALGDELRASERARRAGTVELALVEEGG 384


>gi|149915897|ref|ZP_01904421.1| RNA modification enzyme, MiaB-family, putative [Roseobacter sp.
           AzwK-3b]
 gi|149810220|gb|EDM70066.1| RNA modification enzyme, MiaB-family, putative [Roseobacter sp.
           AzwK-3b]
          Length = 459

 Score =  150 bits (379), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 124/453 (27%), Positives = 205/453 (45%), Gaps = 41/453 (9%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC   + DS R+     ++GY        AD +++NTC   + A  +    +G     
Sbjct: 32  SLGCPKALVDSERILTRLRAEGYGISPDYSGADAVIVNTCGFLDSAKAESLEAIGEALA- 90

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
           +N R        V+V GC+  AE + I    P V  V GP  Y             ++V+
Sbjct: 91  ENGR--------VIVTGCLG-AEPDYITGVHPRVLAVTGPHQY-------------EQVL 128

Query: 151 DTDYSV----EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           D  ++      D F  L    G     R  + +L I EGC+  C FC++P  RG   SR 
Sbjct: 129 DAVHAAVPPSPDPFVDLLPASGVKLTPRHYS-YLKISEGCNHKCKFCIIPDMRGKLSSRP 187

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAW----RGKGLDGEKCTFSDLLYSLSEIKGLVR 262
              V+ EA+KL++NGV E+ ++ Q+ +A+    +    +G +   +DL   L  +   VR
Sbjct: 188 AHAVIREAQKLVENGVRELLIISQDTSAYGVDIKHAEANGHRAHITDLARDLGRLGAWVR 247

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           L Y   +P   +   + A G   +++PYL +P Q      L+ M R   A      I   
Sbjct: 248 LHYVYPYPHVRNLIPLMAEG---LVLPYLDIPFQHAHPETLRRMARPAAAARTLDEIAAW 304

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           RS  PDI + S FIVG+PGET+ +F+  +D +D+    +   FKY    G   + + + V
Sbjct: 305 RSDCPDITLRSTFIVGYPGETEQEFQTLLDWLDEAQLDRVGCFKYENVAGARSNALPDHV 364

Query: 383 DENVKAERLLCLQKK---LREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV 439
            E VK +R     +K   + E +++     V Q+I   I++ G    +  G +P +   +
Sbjct: 365 PEEVKQDRWDRFMEKAQAISEAKLAAKVGSVQQVIVDDIDEDGIATCRTKGDAPEIDGCL 424

Query: 440 L---NSKNHNIGDIIKVRITDVKISTLYGELVV 469
                ++  ++GDI+ V + +     L+G L +
Sbjct: 425 FIDERTEGLSVGDIVTVEVDEAGDYDLWGSLTL 457


>gi|193084232|gb|ACF09895.1| MiaB-like tRNA modifying enzyme [uncultured marine crenarchaeote
           AD1000-23-H12]
          Length = 422

 Score =  150 bits (379), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 123/448 (27%), Positives = 217/448 (48%), Gaps = 32/448 (7%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +  V+SYGC  N+ D+  +  +   +GY  +N+  D+DL V+ TC +++    K+   + 
Sbjct: 2   KVHVESYGCSANIADAEMISGLLSQKGYNVLNNDPDSDLNVIVTCTVKDPTFNKM---VK 58

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           RI++L ++    G  L  ++AGC+ + E ++IL+ +   +++  P + +   +  + A  
Sbjct: 59  RIKSLSST----GKPL--IIAGCMPKTELDKILQINDQASLL-DPGSVHLAVDAAKAALA 111

Query: 146 GKRVVDTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           G++         +K    RL        R   V     + +GC   CTFC V + RG  +
Sbjct: 112 GEKFESISSKRSNKVLLPRL--------RSNPVVHIAEVSQGCLSKCTFCQVKFARGGLV 163

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           S     +V E  + + +G  EI L  Q++  + GK +   K +  +LL  + +I G   +
Sbjct: 164 SYRPLDIVREIEQAVIDGCREIWLTSQDIGCY-GKDI---KTSLPELLNIICDIDGDFMV 219

Query: 264 RYTTSHPRDMS---DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
           R    +P  +    D LI ++ D  +   +LH+PVQSGSD ILK M R H+  ++   + 
Sbjct: 220 RVGMMNPMHLDEIIDDLITSYMDPKIFK-FLHIPVQSGSDEILKLMKRMHSVNDFELTVK 278

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           + R+  P+I++S+D IVGFP ETD  F+ T+DLV +I +      ++  R GT   +   
Sbjct: 279 KFRNAFPNISLSTDIIVGFPDETDLQFQETLDLVRRINFDTVNISRFGSRPGTEAYSK-P 337

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440
            +   +  ER   +    +    S N   VG   +  I K+ K     V R+P  + V+L
Sbjct: 338 ILPHKIVKERSKLMHTVAKSTSHSRNKIWVGWKGKSTIVKNVKNAQ--VARNPSYKPVIL 395

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
            + N  +G  +   I +   + L G L+
Sbjct: 396 KT-NLPLGSSVNTEIVNYSANCLVGTLI 422


>gi|304382716|ref|ZP_07365208.1| RNA modification enzyme [Prevotella marshii DSM 16973]
 gi|304336167|gb|EFM02411.1| RNA modification enzyme [Prevotella marshii DSM 16973]
          Length = 433

 Score =  150 bits (379), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 130/463 (28%), Positives = 216/463 (46%), Gaps = 53/463 (11%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEK-VYS 82
           R  + + GC  N+ DS  +   F + GY  V+  +    ++ V+NTC   E A E+ + +
Sbjct: 5   RIDIVTMGCSKNLVDSEILMKQFEANGYHCVHDAEHPQGEIAVINTCGFIESAKEESINT 64

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            L  ++  K  R+ +     + V GC++Q   +E+    P V+   G   Y +L   L +
Sbjct: 65  ILEFVQAKKEGRLNK-----LFVMGCLSQRYKDELEAEIPQVDKFYGKFNYKQLLTDLGK 119

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT-----AFLTIQEGCDKFCTFCVVPY 197
           A                       DG    +R +T     A+L I EGCD+ C +C +P 
Sbjct: 120 AEAAS------------------CDG----RRHLTTPRHYAYLKISEGCDRHCAYCAIPL 157

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257
             G  +SR ++ +V+E  +L+  GV E  ++ Q +  + G  +DG     ++L+  +S++
Sbjct: 158 MTGRHVSRPMNDIVNEVEELVSIGVKEFQVIAQELTYY-GMDIDGH-LHIAELIRRISDV 215

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
           +G+  +R   ++P      L+    + D +  YL + +Q  SD +L  M R  +  E  +
Sbjct: 216 QGVKWIRLHYAYPNQFPYELLDVIRERDNVCKYLDIALQHISDSMLTRMRRHVSKEETLR 275

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT-PGS 376
           +I  IR   P I + +  +VGFPGETD+DF   MD V    + +  +F YS   GT   +
Sbjct: 276 LIRDIRRQVPGIHLRTTLMVGFPGETDEDFEELMDFVRWARFERMGAFAYSEEEGTYSAT 335

Query: 377 NMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR-- 431
           +  + V   VK +   RL+ LQ+K+           VG  ++V+I++  KE    VGR  
Sbjct: 336 HYPDDVSPQVKEDRLNRLMALQQKI---SAEVEAEKVGCTLQVIIDR--KEGDFYVGRTE 390

Query: 432 --SPWLQSVVLNS---KNHNIGDIIKVRITDVKISTLYGELVV 469
             SP +   VL S   K   IGD   V++       LYGE+V 
Sbjct: 391 FCSPEVDPEVLISAGEKRLKIGDFYAVKMRAADEFDLYGEVVT 433


>gi|86742221|ref|YP_482621.1| hypothetical protein Francci3_3540 [Frankia sp. CcI3]
 gi|123737129|sp|Q2J750|RIMO_FRASC RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|86569083|gb|ABD12892.1| SSU ribosomal protein S12P methylthiotransferase [Frankia sp. CcI3]
          Length = 523

 Score =  150 bits (379), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 113/422 (26%), Positives = 184/422 (43%), Gaps = 30/422 (7%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +R  + + GC  N  DS  +     + G+E V+   DAD +++NTC   + A +     L
Sbjct: 7   RRVALITLGCSRNEVDSEELAARLGADGWELVSDAADADAVLVNTCGFVDAAKKDSIDAL 66

Query: 85  GRIRNLKNSRIKEG-------GDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLP 137
                L+      G       G   VV  GC+A+  G E+    P  + V+G   Y  + 
Sbjct: 67  LAADGLRAGGGPSGPADGAGPGPRAVVAVGCLAERYGTELAESLPEADAVLGFDAYPNIA 126

Query: 138 ELLERARFGKRVVDTDYSVEDKFERLSIVD---------------GGYNRKR----GVTA 178
             L     G  V    +S  D+   L I                 G    +R    G  A
Sbjct: 127 THLAAVLAGTPV--PAHSPRDRRTMLPITPVDRAAPALPPAAVSTGAVPLRRRLTAGPVA 184

Query: 179 FLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK 238
            L I  GCD+ C FC +P  RG  +SRS   V+ EA  L   G  E+ L+ +N  ++ GK
Sbjct: 185 VLKISSGCDRRCAFCAIPSFRGSHVSRSPDDVLAEAEWLAGQGARELVLVSENSTSY-GK 243

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
            L G+      LL  L+ + G+VR+R     P +M   L++       L PYL L  Q  
Sbjct: 244 DL-GDLRALEKLLPQLAAVSGIVRVRTVYLQPAEMRPSLLEVLLTTPGLAPYLDLSFQHA 302

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           S  +L+ M R   +  +  ++ R R++ P++   S+ IVGFPGET +D     + ++   
Sbjct: 303 SPPVLRRMRRFGGSGHFLDLLARARALAPELGARSNVIVGFPGETPEDVDILAEFLEAAE 362

Query: 359 YAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI 418
                 F YS   GT  + + +++ + +   R + +   + +   +  DA +G  ++VL+
Sbjct: 363 LDAVGVFGYSDEEGTEAAGLTDKIPDELIERRRVRVTDLVEQLTAARADARIGSRVQVLV 422

Query: 419 EK 420
           E+
Sbjct: 423 EE 424


>gi|94986752|ref|YP_594685.1| 2-methylthioadenine synthetase [Lawsonia intracellularis
           PHE/MN1-00]
 gi|94731001|emb|CAJ54364.1| 2-methylthioadenine synthetase [Lawsonia intracellularis
           PHE/MN1-00]
          Length = 436

 Score =  150 bits (378), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 109/413 (26%), Positives = 197/413 (47%), Gaps = 29/413 (7%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
            P  F + ++GC++N Y+S  + + + +   E V +   AD+I+LNTC I   A      
Sbjct: 4   TPWTFSIVTFGCKVNQYESQSIREAWSNLHGEEVATPQTADIILLNTCAITANA------ 57

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +   R L N   +E  +  +++ GC      E  L + P V   +  +   +L   L  
Sbjct: 58  -ITDARQLINKLHREAPNSKIILTGCATDLTNEA-LYKLPGVYTFISQKNKTQLLSNLPL 115

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            +  +  + T+    + F + SI +  +NR R +   + +Q+GC   CT+C++P TRG  
Sbjct: 116 TQLNQDQLQTN---TNTFPQFSISN--FNRSRPI---VKVQDGCSHSCTYCIIPSTRGKP 167

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG--KGLDGEKCTFSDLLYSLSEI-KG 259
            SRS  + + E ++L++ G  EI L G N+  +    +G       +S L   LS   KG
Sbjct: 168 KSRSPKECLIEIQQLLNAGFREIILSGINLRQYTATQQGCKDFWELYSFLDKKLSPTWKG 227

Query: 260 LVRLRYTTSHPRDMS----DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
           + RLR ++  P  ++    D L  +H         LHL +QSGS  ILK M+R H   +Y
Sbjct: 228 IARLRISSLDPAQLTQRGLDILSNSHMGCQ----QLHLSIQSGSAEILKKMHRSHYTPQY 283

Query: 316 -RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
                 ++ ++     + +DFI+GFPGET+  F+ T+DL+ ++       F +S R  T 
Sbjct: 284 LLDTTKKLSTIWHKFGLGADFIIGFPGETEKHFQETVDLIKELPLTYGHIFPFSARPNTI 343

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVG-QIIEVLIEKHGKEKG 426
            + +   + ++   +R   +++ + +++  F+   +    + +  E  GK  G
Sbjct: 344 AATLPNHIKKSESQQRAATIRQLITQKEKIFHKQLLTMSTLHIAPEGGGKTGG 396


>gi|224024935|ref|ZP_03643301.1| hypothetical protein BACCOPRO_01666 [Bacteroides coprophilus DSM
           18228]
 gi|224018171|gb|EEF76169.1| hypothetical protein BACCOPRO_01666 [Bacteroides coprophilus DSM
           18228]
          Length = 432

 Score =  150 bits (378), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 121/450 (26%), Positives = 209/450 (46%), Gaps = 39/450 (8%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEKVYSFLGRIR 88
           + GC  N+ DS ++     + GY+  +  D    ++ V+NTC     A E+  + +    
Sbjct: 10  TLGCSKNLVDSEKLMKQLEANGYKVTHDSDHPQGEIAVINTCGFIGDAKEESINMI---- 65

Query: 89  NLKNSRIKEGGDLL-VVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147
            L+  + KE G L  + V GC+++   +E+    P V+   G   +  L   L ++    
Sbjct: 66  -LEFCQAKEEGRLKKLFVMGCLSERYLQELTGEIPQVDKFYGKFNWNDLLNDLGKS---- 120

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
                 Y  E   ER       Y       A+L I EGCD+ C++C +P   G  +SR +
Sbjct: 121 ------YHSEFAIERHLTTPSHY-------AYLKISEGCDRKCSYCAIPIITGRHVSRPM 167

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYT 266
            +++DE R L+  GV E  ++ Q +  +   G+D  +K    +L+  ++EI G+  +R  
Sbjct: 168 EEILDEVRLLVSQGVKEFQVIAQELTYY---GVDLYKKQMLPELIEKMAEIPGVEWIRLH 224

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
            ++P    + L +   + D +  Y+ + +Q  SD +L+ M R  +  E  ++I+R R   
Sbjct: 225 YAYPAAFPEDLFRVMREHDNVCKYMDIALQHISDNMLQKMRRHVSKAETYRLIERFREEV 284

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT-PGSNMLEQVDEN 385
           P I + +  +VG PGET++DF    + V K  + +  +F YS   GT    N  + + E 
Sbjct: 285 PGIHLRTTLMVGHPGETEEDFEELKEFVRKARFDRMGAFAYSEEEGTYSAQNYSDDIPEE 344

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVVL- 440
           VK  RL  L    +E       A +G+  +V+I++  KE    +GR    SP +   VL 
Sbjct: 345 VKHRRLDELMAVQQEISADLTHAKIGKEFKVIIDR--KEGDYFIGRTEFDSPEVDPEVLI 402

Query: 441 --NSKNHNIGDIIKVRITDVKISTLYGELV 468
               +N  IG   +V++ D     LY  L+
Sbjct: 403 KDEGQNLVIGSFYQVKVYDADDFDLYATLI 432


>gi|83952788|ref|ZP_00961518.1| RNA modification enzyme, MiaB family protein [Roseovarius
           nubinhibens ISM]
 gi|83835923|gb|EAP75222.1| RNA modification enzyme, MiaB family protein [Roseovarius
           nubinhibens ISM]
          Length = 482

 Score =  150 bits (378), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 127/455 (27%), Positives = 205/455 (45%), Gaps = 49/455 (10%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC   + DS R+     ++GY        AD +++NTC   + A  +    +G     
Sbjct: 58  SLGCPKALVDSERILTRLRAEGYGISPDYSGADAVIVNTCGFLDSAKAESLEAIGEA--- 114

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               +KE G   V+V GC+  AE + I    P V  V GP  Y             ++V+
Sbjct: 115 ----LKENG--RVIVTGCLG-AEPDYITGVHPKVLAVTGPHQY-------------EQVL 154

Query: 151 DTDYSV----EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           D  +       D F  L          R  + +L I EGC+  C FC++P  RG   SR 
Sbjct: 155 DAVHGAVPPSPDPFVDLLPASSVKLTPRHYS-YLKISEGCNHKCKFCIIPDMRGRLASRP 213

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-------GEKCTFSDLLYSLSEIKG 259
              V+ EA KL++NGV E+ ++ Q+ +A+   G+D       G +   +DL   L  +  
Sbjct: 214 AFAVMREAEKLVENGVRELLVISQDTSAY---GVDIKHAEDRGHRAHITDLARDLGSLGA 270

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR-RHTAYEYRQI 318
            VRL Y   +P       + A G   +++PYL +P Q     +LK M R  HT+    +I
Sbjct: 271 WVRLHYVYPYPHVRQLIPLMAEG---LVLPYLDIPFQHSHPDVLKRMARPAHTSKTLTEI 327

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
               R + PDI + S FIVG+PGET+ +F+  +D +D+    +   FKY    G   +++
Sbjct: 328 A-AWRDICPDITLRSTFIVGYPGETEAEFQHLLDWMDEAQLDRVGCFKYENVDGARSNDL 386

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVL---IEKHGKEKGKLVGRSPWL 435
            + V E VK ER     +K +    +   A VG + EV+   I+  G    +    +P +
Sbjct: 387 PDHVAEEVKQERWERFMEKAQAISEAKLAAKVGSVQEVIVDDIDADGIATCRTKADAPEI 446

Query: 436 QSVVL---NSKNHNIGDIIKVRITDVKISTLYGEL 467
              +     ++  ++GD++ V + +     L+G L
Sbjct: 447 DGNLFIDEGTEGLSVGDLVSVTVDEAGEYDLWGRL 481


>gi|317125300|ref|YP_004099412.1| 30S ribosomal protein S12P methylthiotransferase [Intrasporangium
           calvum DSM 43043]
 gi|315589388|gb|ADU48685.1| SSU ribosomal protein S12P methylthiotransferase [Intrasporangium
           calvum DSM 43043]
          Length = 489

 Score =  150 bits (378), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 117/436 (26%), Positives = 198/436 (45%), Gaps = 40/436 (9%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC  N  DS  +     ++G+  V    +AD+ V+NTC   E+A +     L    +L
Sbjct: 16  TLGCTRNEVDSEELAGRLQAEGWTLVEDAAEADVAVVNTCGFVEQAKKDSIDALLEASDL 75

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
           K     +G    VV  GC+A+  G+++  + P  + V+G  +Y  +   L+    G  V 
Sbjct: 76  K----ADGRTRAVVAVGCLAERYGKDLAEQLPEADAVLGFDSYQDMSSHLQTILGGGHVP 131

Query: 151 D------------TDYSVEDKFERLSIVDGG-----YNRKRGVT---------------- 177
                        T  +   +  R+++   G     Y    G                  
Sbjct: 132 SHTPGDRRRLLPLTPSARPAEAVRVALPGHGDHPEPYAAGPGPAPASGPRVVRARLDGRP 191

Query: 178 -AFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR 236
            A L I  GCD+ C+FC +P  RG  +SR  + V+ EAR L   GV E+ L+ +N  ++ 
Sbjct: 192 WAPLKIASGCDRRCSFCAIPMFRGAFVSRRPADVIAEARWLAGQGVKELFLVSENSTSY- 250

Query: 237 GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQ 296
           GK L G+      LL  L+ ++G+ R+R +   P ++   L+ A      ++PY  +  Q
Sbjct: 251 GKDL-GDLGLLEKLLPELTAVEGIERVRVSYLQPAEIRPGLLDAMAGTPGVVPYYDISFQ 309

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
             S+ +L+ M R  +   +  ++ R+R+  P+  I  + IVGFPGET+ D       + +
Sbjct: 310 HASEPVLRRMRRFGSRAAFLDLVARVRASAPEAGIRCNVIVGFPGETEADVAELEAFLTE 369

Query: 357 IGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEV 416
                   F YS   GT      E+V  +V A+RL  L + + E      +  +G ++EV
Sbjct: 370 ARLDVVGVFGYSDEDGTEAEGHGEKVAADVIADRLERLTRLVEELTAQRAEERIGDLVEV 429

Query: 417 LIEKHGKEKGKLVGRS 432
           L+E+  ++ G+LVGR+
Sbjct: 430 LVEEIDEDDGRLVGRA 445


>gi|297191680|ref|ZP_06909078.1| radical SAM superfamily protein [Streptomyces pristinaespiralis
           ATCC 25486]
 gi|197721614|gb|EDY65522.1| radical SAM superfamily protein [Streptomyces pristinaespiralis
           ATCC 25486]
          Length = 498

 Score =  150 bits (378), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 128/447 (28%), Positives = 197/447 (44%), Gaps = 44/447 (9%)

Query: 23  VPQRFFVK--SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKV 80
           +P+R  V   + GC  N  DS  +     + G+E V    DAD+ V+NTC   E A +  
Sbjct: 1   MPERRTVALVTLGCARNEVDSEELAGRLAADGWELVEDASDADVAVVNTCGFVEAAKKDS 60

Query: 81  YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140
              L    +LK+     G    VV  GC+A+  G+++    P  + V+G   Y  + + L
Sbjct: 61  VDALLEANDLKD----HGRTQAVVAVGCMAERYGKDLAEALPEADGVLGFDDYADISDRL 116

Query: 141 ERARFG--------------------KRVVDTDYSV----------EDKFERLSIVDGG- 169
           +    G                    +R   TD ++          ED  E ++   G  
Sbjct: 117 QTILSGGVHASHTPRDRRKLLPLSPVERQQATDVALPGHGDVAPAPEDLPEGIAPESGPR 176

Query: 170 --YNRKRGVT--AFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEI 225
               R+ G +  A + +  GCD+ C+FC +P  RG  ISR  S V+ E R L + GV EI
Sbjct: 177 APLRRRLGTSPVASVKLASGCDRRCSFCAIPSFRGSFISRRPSDVLGETRWLAEQGVKEI 236

Query: 226 TLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLD 285
            L+ +N N   GK L G+      LL  L+ + G+ R+R +   P +M   LI       
Sbjct: 237 MLVSEN-NTSYGKDL-GDIRLLETLLPELAAVDGIERVRVSYLQPAEMRPGLIDVLTSTP 294

Query: 286 VLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDD 345
            + PY  L  Q  +  +L++M R      + ++++ IR   P   + S+FIVGFPGET+ 
Sbjct: 295 KVAPYFDLSFQHSAPGVLRAMRRFGDTERFLELLETIRGKAPQAGVRSNFIVGFPGETEA 354

Query: 346 DFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSF 405
           DF      +          F YS   GT       ++D +V AERL  + +   E     
Sbjct: 355 DFAELERFISAARLDAVGVFGYSDEEGTEAVTYDGKLDADVIAERLEHMSRIADELTAQR 414

Query: 406 NDACVGQIIEVLIEKHGKEKGKLVGRS 432
            +  +G+ +EVL+E    E G  VGR+
Sbjct: 415 AEERLGETLEVLVESVDDEDGA-VGRA 440


>gi|283780184|ref|YP_003370939.1| MiaB-like tRNA modifying enzyme [Pirellula staleyi DSM 6068]
 gi|283438637|gb|ADB17079.1| MiaB-like tRNA modifying enzyme [Pirellula staleyi DSM 6068]
          Length = 435

 Score =  150 bits (378), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 122/399 (30%), Positives = 204/399 (51%), Gaps = 42/399 (10%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKV-YSFLGRIRN 89
           + GC++N Y++  + +     GY      + A L V+NTC +      K  Y+    IR 
Sbjct: 9   TLGCKVNQYETELVREGLVRFGYHDAVEDEQAQLCVVNTCTVTSDGDSKSRYT----IRK 64

Query: 90  LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149
           L     +E  D  +VV GC A    +E+L+   +V VV   +    LP++L+R  +G  V
Sbjct: 65  LA----RENPDSRIVVMGCYATRAPDELLKLPNVVEVVTDKR---ELPDVLQR--YG--V 113

Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209
           +D    +  +F       G  +R     A++ +Q+GC   C++C++P  R    SR L  
Sbjct: 114 IDLPSGI-SRF-------GTRHR-----AYVKVQDGCLLRCSYCIIPQVRPHVSSRPLQH 160

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK-----CTFSDLLYSLSEIKGLVRLR 264
           +V+E ++L+ NG  E+ L G ++  + G   +  K        S LL  L ++ G  RLR
Sbjct: 161 IVEEVQRLVANGYREVVLTGVHLGHY-GVESNWNKPKEAWLRLSTLLRELVKLPGDFRLR 219

Query: 265 YTTSHPRDMSDCLIKAHGD-LDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
            ++    +++  LI    D    + P+LHL +QSGSD +L+ M RR ++  +   IDR +
Sbjct: 220 LSSIEATEVTRELISVMADNRQRIAPHLHLCLQSGSDSVLRRMRRRWSSRMF---IDRCQ 276

Query: 324 SVRPDI---AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
            +R  +   AI++D IVGFPGET+ +F AT++      +++   F YS R GTP + M  
Sbjct: 277 MLRDALDAPAITTDIIVGFPGETEAEFEATLETARASAFSKIHIFPYSARKGTPAAEMPG 336

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419
           Q+   VK ER   L +  ++ Q  +  + VG+ +E+L+E
Sbjct: 337 QISFEVKTERSARLAELEKQMQREYLASLVGKPLELLVE 375


>gi|220904669|ref|YP_002479981.1| MiaB family RNA modification protein [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
 gi|219868968|gb|ACL49303.1| RNA modification enzyme, MiaB family [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
          Length = 506

 Score =  150 bits (378), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 111/435 (25%), Positives = 192/435 (44%), Gaps = 71/435 (16%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           FF+ ++GC++N Y++  + + +   G    +S  +AD+I +N+C I  K      + + R
Sbjct: 6   FFLVTFGCKVNQYETQSLREAWQGLGGVECSSPAEADVICVNSCAITAKGERDARNAVFR 65

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQ---------------------AEGEEILRRSPIVN 125
           +R       +E  D  +++ GC A+                      E +++L + P  +
Sbjct: 66  LR-------REAPDARLILTGCAARLFADYRPRPGAAWAAPDLLVPQEHKDLLLQGPWSS 118

Query: 126 VVVGPQ--------------------------TYYR---LPELLERARFGKRVVDTDYSV 156
              GP                           T +R    P+  E         DT+   
Sbjct: 119 DFAGPDSCATASATLPAQHEKMPSPSGSAPLFTPFREVNRPQKAEEHASTTMNADTNADA 178

Query: 157 EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARK 216
            + F   +I    + R R V   L +Q+GC   CT+C+VP TRG   SR +  V+ EAR+
Sbjct: 179 ANSFPSFNIST--FKRARPV---LKVQDGCAHRCTYCIVPLTRGKPRSRPVEHVLAEARR 233

Query: 217 LIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-----SEIKGLVRLRYTTSHPR 271
           L+++G  EI + G N+  +   G D +   F +LL +L      E  GL R R ++  P 
Sbjct: 234 LLESGHVEIMISGINLGQY---GRDAQTGDFWNLLRTLDTALAPEFAGLARFRISSLEPG 290

Query: 272 DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH-TAYEYRQIIDRIRSVRPDIA 330
            + +  +       +L P+LH+ +Q GS  +LK M R H +     + +  + +  P + 
Sbjct: 291 QLDERALDILRHCRMLCPHLHISLQHGSRNVLKRMGRGHYSPAMLEEAVRELSAHWPAMG 350

Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER 390
           + +D I GFPGET+ D +  ++LV ++    A  F YS R GT       Q+   +K ER
Sbjct: 351 LGADIIAGFPGETEKDVQELLELVARLPLGYAHVFPYSRRPGTAAERFEGQIPHALKLER 410

Query: 391 LLCLQKKLREQQVSF 405
              +++ +  +Q  F
Sbjct: 411 AARVRQAVALKQKEF 425


>gi|332185879|ref|ZP_08387626.1| RNA modification enzyme, MiaB family protein [Sphingomonas sp. S17]
 gi|332014237|gb|EGI56295.1| RNA modification enzyme, MiaB family protein [Sphingomonas sp. S17]
          Length = 414

 Score =  150 bits (378), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 126/444 (28%), Positives = 208/444 (46%), Gaps = 46/444 (10%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC++N+ +S  +  +  + G E        D++V+N+C +  +A ++  +        
Sbjct: 11  SLGCRLNIAESETIRAL--AAGRE--------DMVVVNSCAVTNEAVKQTRAA------- 53

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG------PQTYYRLPELLERAR 144
                K   D  +VV GC AQ +        P V  V+G      P+++     +L    
Sbjct: 54  IRRAAKARPDAQIVVTGCAAQIDPTS-FAAMPEVARVLGNADKLRPESWASTEPML--VA 110

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
              RVV+T   +   F        G+ R     AF+ +Q GCD  CTFC++P  RG   S
Sbjct: 111 DLSRVVETAPHLVSAF-------AGHAR-----AFVEVQNGCDHACTFCIIPTGRGPSRS 158

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
                V++   + ++ G  E+ L G ++ ++ G  L G+      +   L+ +  L RLR
Sbjct: 159 VPAGLVIERIARAVELGHQEVVLTGVDLTSY-GHDLPGQPGLGLLVERILTHVPALPRLR 217

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
            ++    ++ D L +       +MP+LHL +Q+G+D ILK M RRH+  +   I++R+ S
Sbjct: 218 LSSLDSIEIDDRLFELVTGEPRVMPHLHLSLQAGNDLILKRMKRRHSRAQSVAIVERMLS 277

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
            RP+IAI +D I GFP E D     T+ L+D      A  F YS R GTP + M  QV  
Sbjct: 278 ARPEIAIGADLIAGFPTEDDAMAADTLALIDDCRIVHAHIFPYSARDGTPAARM-PQVPH 336

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
            ++ ER   L++    ++  +  A +G   +VL+E+ G       G +P    +  +   
Sbjct: 337 PLRRERAAKLREAAARRRRDWLAAQIGGTRDVLVERPGTR-----GHAPDFADIHFSPAT 391

Query: 445 HNIGDIIKVRITDVKISTLYGELV 468
              G I +VR+T    + L G+LV
Sbjct: 392 EP-GRIARVRVTAATETHLIGQLV 414


>gi|160898308|ref|YP_001563890.1| ribosomal protein S12 methylthiotransferase [Delftia acidovorans
           SPH-1]
 gi|238065332|sp|A9BVZ2|RIMO_DELAS RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|160363892|gb|ABX35505.1| MiaB-like tRNA modifying enzyme YliG [Delftia acidovorans SPH-1]
          Length = 471

 Score =  150 bits (378), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 131/483 (27%), Positives = 207/483 (42%), Gaps = 66/483 (13%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
            P+  FV S GC   + DS  +     ++GY+   + + ADL+++NTC   + A  +   
Sbjct: 18  APRVGFV-SLGCPKALTDSELILTQLSAEGYQTSKTFEGADLVIVNTCGFIDDAVRESLD 76

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEE----ILRRSPIVNVVVGPQTYYRLPE 138
            +G         + E G   V+V GC+    G++    I    P V  V GP     +  
Sbjct: 77  TIGEA-------LAENGK--VIVTGCLGAKAGKDGGNLIQEVHPSVLAVTGPHATQEV-- 125

Query: 139 LLERARFGKRVVDTDYS-VEDKFERLSIVDGGYNRKRGVT------AFLTIQEGCDKFCT 191
                      V T      D F  + +V G +  + G+       A+L I EGC+  CT
Sbjct: 126 --------MNAVHTHLPKPHDPF--IDLVPGAFG-EAGIKLTPRHYAYLKISEGCNHRCT 174

Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGL 240
           FC++P  RG  +SR +  V+ EAR L + GV E+ ++ Q+ +A           W GK +
Sbjct: 175 FCIIPSMRGDLVSRPVGDVLKEARALFEGGVKELLVISQDTSAYGVDVKYRTGFWDGKPV 234

Query: 241 DGEKCTFSDLLYSLSEIK----GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQ 296
              K    +L+ +L+EI       VRL Y   +P         A G +   +PYL +P Q
Sbjct: 235 ---KTRMLELVQTLAEIAEPYGAWVRLHYVYPYPSVDEIIPFMATGRV---LPYLDVPFQ 288

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
                +LK M R        + + R R + PD+ I S FI GFPGET+ +F   +  + +
Sbjct: 289 HSHPDVLKRMKRPANGERNLERLQRWREICPDLVIRSTFIAGFPGETEQEFEHLLQFLRE 348

Query: 357 IGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEV 416
               +A  F YSP  G   + +   +   V+ ER         E   +     VGQ ++V
Sbjct: 349 AQIDRAGCFAYSPVEGAAANEIPGMLPLEVREERRARFMAVAEEVSTARLQKRVGQTMQV 408

Query: 417 LIEKH-----GKEKGKLVGRSPWLQSVVL------NSKNHNIGDIIKVRITDVKISTLYG 465
           L++K          G+    +P +  +V        SK + +GD +K RI   +   L G
Sbjct: 409 LVDKSVGLGKKGGVGRSYADAPEIDGLVHLLPPEKASKTYKVGDFVKARIVGTQGHDLVG 468

Query: 466 ELV 468
           + V
Sbjct: 469 QPV 471


>gi|118474280|ref|YP_892031.1| hypothetical protein CFF8240_0856 [Campylobacter fetus subsp. fetus
           82-40]
 gi|118413506|gb|ABK81926.1| conserved hypothetical protein [Campylobacter fetus subsp. fetus
           82-40]
          Length = 413

 Score =  150 bits (378), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 111/401 (27%), Positives = 203/401 (50%), Gaps = 33/401 (8%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + + K++GC+ N+YD+  ++   + + Y+  N+ ++AD+IV+N+C +   A   V S++ 
Sbjct: 2   KIYFKTFGCRTNIYDTELIKS--YIKSYKITNNENEADIIVVNSCTVTNGADSGVRSYIN 59

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           ++   KNS  K      VV+ GC A ++GEE+ ++S +  V+ G     ++ E L     
Sbjct: 60  QV---KNSGKK------VVLTGCGAVSKGEELFKKSSVFGVL-GASNKSKIDEFLNSQNP 109

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
              + D ++   DK    +IV    N +    AF+ IQEGC+  C++C++P  RG   SR
Sbjct: 110 FFELGDLNFI--DK----NIVS---NYENHTKAFIKIQEGCNFKCSYCIIPSVRG--KSR 158

Query: 206 SLSQ--VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           S+ +  +++EA+ L  NG  EI L G N+ ++     + +  +   LL  L  IKG+ R+
Sbjct: 159 SIDEEVILNEAKILASNGYNEIVLTGTNIGSYG----EEKSSSLGKLLQKLGSIKGIKRI 214

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R  +  P  + +   +   +   L  +LH+ +Q  S  +L  M RR+ A++  ++ + + 
Sbjct: 215 RLGSIEPSQIDESFREILQE-SWLEKHLHIALQHTSQTMLDIMRRRNRAFKDIELFNELS 273

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           ++    A+ SD+IV  PGE++  +   ++   K       +F +SPR GT  ++M   VD
Sbjct: 274 NL--GFALGSDYIVAHPGESEKVWEEGLENFKKFPITHLHAFIFSPRSGTHSASMKIDVD 331

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE 424
             V   RL  L+         F        + +L+EK G +
Sbjct: 332 GVVAKNRLKILKNIAFVNNFEFRKRNKTN-LNILVEKQGSD 371


>gi|126459773|ref|YP_001056051.1| RNA modification protein [Pyrobaculum calidifontis JCM 11548]
 gi|126249494|gb|ABO08585.1| RNA modification enzyme, MiaB family [Pyrobaculum calidifontis JCM
           11548]
          Length = 440

 Score =  149 bits (377), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 138/455 (30%), Positives = 213/455 (46%), Gaps = 58/455 (12%)

Query: 28  FVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRI 87
           +V+++GC +   D+   E +    G   V   +DAD+I++ TC +RE          G +
Sbjct: 5   YVEAFGCWLAKADA---EVIRQRLGLVPVARPEDADVILVYTCAVRED---------GEV 52

Query: 88  RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147
           R L   R   G    ++VAGC+A        R  P     + P      P  +E  R   
Sbjct: 53  RQLARIRELAGLGREMIVAGCLA--------RLRPHTVKSLAPHAELIYPSQVEGGR--- 101

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG---IEIS 204
              + +  V  +FE             G+   + +Q GC   CTFC   YTRG      S
Sbjct: 102 ---EREMRVLPRFEG------------GLVYVVPLQVGCLGNCTFCATKYTRGGAGYVKS 146

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG---EKCTFSDLLYSL-SEIKGL 260
               +V+   +K ++ G  EI L GQ+V  +   G D       T  DLL  L  E+ G 
Sbjct: 147 ADPDEVIRHVKKAVEGGAREIYLTGQDVITY---GFDARWRSGWTLPDLLERLLREVDGE 203

Query: 261 VRLRYTTSHP---RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
            R+R   S P      +D ++        +  Y HLPVQSGSDR+LK+M RR+T  EY++
Sbjct: 204 YRVRIGMSEPWVFERFADQILDIVKRDRRVYRYFHLPVQSGSDRVLKAMGRRYTVDEYKE 263

Query: 318 IIDRIRSVRPD-IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
           +I +IR V  + + I++D IVGFPGE  +DF AT+ LV+++ + +    ++SPR  T  +
Sbjct: 264 LIRKIRRVLGEPVFIATDIIVGFPGEEWEDFLATVKLVEELQFDKVHVARFSPRPFTEAA 323

Query: 377 NMLEQVDENVKAERLLCLQK-KLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWL 435
            M  QV +  K  R   L +  LR   +  N A VG    VLI +   + G +VGR+   
Sbjct: 324 VMPRQVPDAEKKRRSKILSEVALRVAHLR-NGARVGSRDVVLITE--VDHGLVVGRAGDY 380

Query: 436 QSVVLNSKNHN--IGDIIKVRITDVKISTLYGELV 468
           + VV+     +  +G  ++V +       LYG+++
Sbjct: 381 RQVVVKRGPGDGLLGQFVEVVVAGAGPVYLYGDVI 415


>gi|83943879|ref|ZP_00956336.1| RNA modification enzyme, MiaB-family protein [Sulfitobacter sp.
           EE-36]
 gi|83845126|gb|EAP83006.1| RNA modification enzyme, MiaB-family protein [Sulfitobacter sp.
           EE-36]
          Length = 426

 Score =  149 bits (377), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 120/451 (26%), Positives = 206/451 (45%), Gaps = 40/451 (8%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC   + DS R+     ++GY        AD +++NTC   + A  +    +G   N 
Sbjct: 3   SLGCPKALVDSERILTRLRAEGYGVSPDYAGADAVIVNTCGFLDSAKAESLDAIGEALN- 61

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
           +N +        V+V GC+  AE + I    P +  V GP  Y    E +  A  G    
Sbjct: 62  ENGK--------VIVTGCLG-AEPDYIREHHPRILAVTGPHQY----EQVLDAVHGAVPP 108

Query: 151 DTDYSVED-KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209
             D  ++    + +S+    Y+       +L I EGC+  C FC++P  RG   SR    
Sbjct: 109 SPDPFIDLLPAQAVSLTPRHYS-------YLKISEGCNHKCKFCIIPDMRGRLQSRPAHA 161

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-------GEKCTFSDLLYSLSEIKGLVR 262
           ++ EA KL+ NGV E+ ++ Q+ +A+   G+D       G +   +DL   L  +   VR
Sbjct: 162 ILREAEKLVQNGVNELLVISQDTSAY---GVDIKHAEDRGHRAHITDLARDLGSLGAWVR 218

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           L Y   +P   +   + A G   +++PYL +P Q     +LK M R   A +    I   
Sbjct: 219 LHYVYPYPHVRNLIPLMAEG---LVLPYLDIPFQHAHPDVLKRMARPAAAAKTLDEIAAW 275

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R   PDI + S FIVG+PGET+ +F+  +D +D+    +   F+Y    G   + + + V
Sbjct: 276 RDTCPDITLRSTFIVGYPGETEAEFQTLLDWLDEAQLDRVGCFQYENVDGARSNALPDHV 335

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG--KLVGRSPWLQSVVL 440
            + VK +R     +K +    +  +A VG+ ++V+I++   E    +    +P +   + 
Sbjct: 336 PDEVKQDRWNRFMEKAQAISAAKLEAKVGRRMDVIIDEIDDEAATCRTKADAPEIDGNLF 395

Query: 441 ---NSKNHNIGDIIKVRITDVKISTLYGELV 468
                +N ++G I+ V + +     L+G +V
Sbjct: 396 IDEGFENLSVGQIVTVEVEEAGEYDLWGRVV 426


>gi|114605654|ref|XP_001171147.1| PREDICTED: CDK5 regulatory subunit associated protein 1-like 1
           isoform 2 [Pan troglodytes]
          Length = 509

 Score =  149 bits (377), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 115/426 (26%), Positives = 202/426 (47%), Gaps = 35/426 (8%)

Query: 53  YERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQA 112
           ++   +  DADL +LN+C ++  A +    F   I+  +    K      +V+AGCV QA
Sbjct: 22  HQVTENASDADLWLLNSCTVKNPAED---HFRNSIKKAQEENKK------IVLAGCVPQA 72

Query: 113 EGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERL--SIVDGGY 170
           +  +   +      ++G Q   R+ E++E    G  V       +D   RL  + +D   
Sbjct: 73  QPRQDYLKG---LSIIGVQQIDRVVEVVEETIKGHSVRLLGQK-KDNGRRLGGARLDLPK 128

Query: 171 NRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQ 230
            RK  +   ++I  GC   CT+C   + RG   S  + ++VD A++    GVCEI L  +
Sbjct: 129 IRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELVDRAKQSFQEGVCEIWLTSE 188

Query: 231 NVNAWRGKGLDGEKCTFSDLLYSLSEI--------KGLVRLRYTTSHPRDMSDCLIKAHG 282
           +  A+ G+ +         LL+ L E+         G+    Y   H  +M+  L     
Sbjct: 189 DTGAY-GRDIG---TNLPTLLWKLVEVIPEGAMLRLGMTNPPYILEHLEEMAKIL----- 239

Query: 283 DLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGE 342
           +   +  +LH+PVQS SD +L  M R +   ++++++D ++   P I I++D I GFPGE
Sbjct: 240 NHPRVYAFLHIPVQSASDSVLMEMKREYCVADFKRVVDFLKEKVPGITIATDIICGFPGE 299

Query: 343 TDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQ 402
           TD DF+ T+ LV++  +   F  ++ PR GTP + M EQV   VK +R   L +      
Sbjct: 300 TDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKM-EQVPAQVKKQRTKDLSRVF--HS 356

Query: 403 VSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKIST 462
            S  D  +G+  +VL+ +   +    V  + + + V++      +G +++V I +     
Sbjct: 357 YSPYDHKIGERQQVLVTEESFDSKFYVAHNQFYEQVLVPKNPAFMGKMVEVDIYESGKHF 416

Query: 463 LYGELV 468
           + G+ V
Sbjct: 417 MKGQPV 422


>gi|331698386|ref|YP_004334625.1| 30S ribosomal protein S12 methylthiotransferase rimO
           [Pseudonocardia dioxanivorans CB1190]
 gi|326953075|gb|AEA26772.1| Ribosomal protein S12 methylthiotransferase rimO [Pseudonocardia
           dioxanivorans CB1190]
          Length = 495

 Score =  149 bits (377), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 129/486 (26%), Positives = 207/486 (42%), Gaps = 66/486 (13%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDA-----DLIVLNTCHIREKAA 77
            P+R  + + GC  N  DS  +       G+E V +   +     D+IV+NTC   E+A 
Sbjct: 10  APRRAALLTLGCARNEVDSEELAGRLAGSGWELVEADPSSGGPAPDVIVVNTCGFVEQAK 69

Query: 78  EKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLP 137
           +     L     L  S + +     VV  GC+A+  G E+    P  + V+G   Y  L 
Sbjct: 70  KDSIDTL-----LSASDVAQATGAKVVAVGCLAERYGAELAESLPEADAVLGFDAYPELA 124

Query: 138 E---------------------LLERARFGKRVVDTDYSVE-----DKFERLSIVDGGYN 171
           E                     LL      +     D SV          R+ + DG   
Sbjct: 125 ERLGEVLGGHAPAPHVPVDRRTLLPLTPVARPTAAADVSVPGHEWVPDLSRVRLSDG--- 181

Query: 172 RKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQN 231
                 A L +  GCD+ C FC +P  RG  +SR  + V+ EA  L + GV E+ L+ +N
Sbjct: 182 ----PVANLKLASGCDRRCAFCAIPSFRGAFVSRPPADVLAEAAWLAEQGVRELVLVSEN 237

Query: 232 VNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL 291
             ++ GK L G      DLL  L+ + G+ R+R +   P +M   L+        + PY 
Sbjct: 238 STSY-GKDLPGGTRALVDLLPRLAAVPGIERVRASYLQPAEMRPDLVSVIATTPGIAPYF 296

Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA-- 349
            L  Q GS  +L+ M R     ++ ++ +RIR++ P+  I S+ IVGFPGET+DD     
Sbjct: 297 DLSFQHGSAAVLRRMRRFGGRTDFLELCERIRALAPEAGIRSNVIVGFPGETEDDLAELE 356

Query: 350 ---TMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN---VKAERLLCLQKKLREQQV 403
              T   +D +G      F YS   GT  +    ++D +    +  R+  L  +L  Q+ 
Sbjct: 357 AFLTGARLDAVGV-----FGYSDEDGTEAAGYDGKIDPDEVQARVSRISSLVDELVAQRA 411

Query: 404 SFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWL--QSVVLNSKNHNIGDIIKVRITD 457
                 VG  + VL+E+   +  +  GR    +P +  + VV        G++++  + D
Sbjct: 412 EDR---VGSEVVVLVEQAEDDDFECTGRAAHQAPEVDGECVVERGSGLTAGELVRCVVVD 468

Query: 458 VKISTL 463
            + + L
Sbjct: 469 TEGADL 474


>gi|269215587|ref|ZP_06159441.1| MiaB tRNA modifying enzyme-like protein [Slackia exigua ATCC
           700122]
 gi|269131074|gb|EEZ62149.1| MiaB tRNA modifying enzyme-like protein [Slackia exigua ATCC
           700122]
          Length = 446

 Score =  149 bits (377), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 119/442 (26%), Positives = 203/442 (45%), Gaps = 24/442 (5%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC  N  D+  M+    S G+  V+    A  +V+NTC   + A E+    +     L
Sbjct: 23  TLGCAKNEVDTADMKRAVVSAGFGVVDDPGQASAVVVNTCSFIQTAIEESIDAILEAAAL 82

Query: 91  KN-SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149
            N +R    GD  ++V+GC+    G ++       +  V       + ++LE + FG + 
Sbjct: 83  DNVAR----GDAKLIVSGCLPSRFGADLETELEEASAFVPCAGESDIADVLE-SLFGPQP 137

Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209
            + D ++           G +       A++ I +GCD FC+FC +PY RG   S +  +
Sbjct: 138 -EPDAAL-----------GAHLFDGNAAAYVKIGDGCDHFCSFCSIPYIRGRYRSFTYER 185

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSH 269
           + +   + I  GV EITL+ Q+   W G  L+G++ T + L+ +L+        R     
Sbjct: 186 IREAVARQISYGVREITLIAQDTGRW-GCDLEGDR-TLAWLIDALASEFADTWFRVMYLE 243

Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329
           P  ++D L+        +  YL +PVQ  S+R+L SM R   A  +  +    R     I
Sbjct: 244 PEGVTDELLDVMASRPNVCRYLDIPVQHASERVLVSMRRSGDARRFLDLFAHARERIEGI 303

Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAE 389
           A+ +  I GFPGETD+DF   +D +++        F YS   GT  + M  Q+DE  K  
Sbjct: 304 AMRTTVIAGFPGETDEDFSKLLDFLEQADLDYVGVFPYSREDGTRAARMEGQIDEETKLA 363

Query: 390 RLLCLQKKLREQQVSFNDACVGQIIEVLI---EKHGKEKGKLVGRSPWLQSVVLNSKNHN 446
           R   ++        S   + +G +++V++   E+ G+  G+ + ++P +  VV       
Sbjct: 364 RAQEVRDLCDALAFSRVSSRIGDVMDVVVLGREEDGRVYGRAMCQAPEVDGVVY-LDGGT 422

Query: 447 IGDIIKVRITDVKISTLYGELV 468
            GD++K RI D     + GE+V
Sbjct: 423 AGDVVKARIVDTLAYEMEGEIV 444


>gi|299138362|ref|ZP_07031541.1| MiaB-like tRNA modifying enzyme YliG [Acidobacterium sp. MP5ACTX8]
 gi|298599608|gb|EFI55767.1| MiaB-like tRNA modifying enzyme YliG [Acidobacterium sp. MP5ACTX8]
          Length = 539

 Score =  149 bits (377), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 92/278 (33%), Positives = 154/278 (55%), Gaps = 17/278 (6%)

Query: 176 VTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW 235
            +A++ I EGCD  C+FC++P  RG   SR L+ +V E + LI  GV EITL+GQ+   +
Sbjct: 232 ASAYIKIAEGCDHPCSFCIIPQLRGKFRSRPLASIVAETKSLIAQGVREITLIGQDTTCY 291

Query: 236 RGKGLD-----GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY 290
            G+ L      G++   +DLL +L+ + GL  LR+  ++P  ++  L+++    D +  Y
Sbjct: 292 -GEDLPKDAVTGKRPELADLLDALAPLPGLKWLRFLYAYPNKVTTRLLESIAKHDTVAKY 350

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
           L +P+Q  S  +L+ M R  T++ + QIID+ RS+ P + + + FIVGFPGET+ DF   
Sbjct: 351 LDVPLQHASANVLRRMKRGGTSHRFLQIIDKARSIVPGLVLRTSFIVGFPGETEADFEEL 410

Query: 351 MDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE-NVKAER--LLCLQKKLREQQVSFND 407
           +  V +        F YS   G    ++ E+V +  ++A R  L+ LQ K+         
Sbjct: 411 LAFVQEAKIDWLGVFSYSDEEGAGAFSLDEKVPKRTIEARRRKLMKLQNKI---STKARR 467

Query: 408 ACVGQIIEVLIEKHGKE-----KGKLVGRSPWLQSVVL 440
           A VG+ I++L+E   +E     +G+ + ++P +   VL
Sbjct: 468 AWVGREIDLLVEGESEETELLWQGRSLDQAPEIDGKVL 505



 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/108 (33%), Positives = 57/108 (52%), Gaps = 7/108 (6%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA-EKVYS 82
           P+  FV S GC  N+ DS  M  +    G E     +DA+++V+NTC   + A  E V +
Sbjct: 19  PKVGFV-SLGCPKNLVDSEVMMGLLHRGGAELTPRAEDAEILVVNTCSFIDSAKQESVDT 77

Query: 83  FLGRIRNLKNSRIKEGGDLL-VVVAGCVAQAEGEEILRRSPIVNVVVG 129
            L  +++    +I  GG    ++VAGC+ +   +EI +  P V+ VVG
Sbjct: 78  ILEMVQH----KIANGGRAQKLIVAGCLVERYRDEIRKNIPEVDAVVG 121


>gi|198274636|ref|ZP_03207168.1| hypothetical protein BACPLE_00788 [Bacteroides plebeius DSM 17135]
 gi|198272083|gb|EDY96352.1| hypothetical protein BACPLE_00788 [Bacteroides plebeius DSM 17135]
          Length = 433

 Score =  149 bits (377), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 122/450 (27%), Positives = 214/450 (47%), Gaps = 39/450 (8%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEKVYSFLGRIR 88
           + GC  N+ DS ++     + GY+  +  D    ++ V+NTC     A E+  + +    
Sbjct: 10  TLGCSKNLVDSEKLMKQLEANGYKVTHDSDHPQGEIAVINTCGFIGDAKEESINMI---- 65

Query: 89  NLKNSRIKEGGDLL-VVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147
            L+  + KE G L  + V GC+++   +++    P V+   G    +   ELL  A  GK
Sbjct: 66  -LEFCQAKEEGRLKKLYVMGCLSERYLKDLQMEIPQVDKFYGK---FNWDELL--ADLGK 119

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
                 Y  E   ER       Y       A+L I EGCD+ C++C +P   G  +SR +
Sbjct: 120 A-----YHSEFAIERHLTTPKHY-------AYLKISEGCDRKCSYCAIPIITGKHVSRPM 167

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYT 266
            +++DE R L+  GV E  ++ Q +  +   G+D  +K    +L+  ++ I G+  +R  
Sbjct: 168 EEILDEVRLLVSEGVKEFQVIAQELTYY---GVDLYKKQMLPELIEQMAHIPGVEWIRLH 224

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
            ++P    + L +   + D +  Y+ + +Q  SD +L+ M R  T  E  Q+I++ R   
Sbjct: 225 YAYPAHFPEDLFRVMRENDNVCKYMDIALQHISDNMLQKMRRHVTKAETYQLIEKFRKEV 284

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT-PGSNMLEQVDEN 385
           P I + +  +VG PGET+ DF   M+ V    + +  +F YS   GT    +  +++ + 
Sbjct: 285 PGIHLRTTLMVGHPGETEQDFEELMEFVRTARFDRMGAFAYSEEEGTYSAKHYKDEIPQE 344

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQ-SVVL 440
           VK +RL  L +  +E     +   +GQ  +V+I++  KE    +GR    SP +   V++
Sbjct: 345 VKQQRLDKLMELQQEISADLSHRKIGQEFKVIIDR--KEGDYYIGRTQFDSPEVDPEVLI 402

Query: 441 NSKNH--NIGDIIKVRITDVKISTLYGELV 468
             +NH   IG   +V++ D     LY  +V
Sbjct: 403 KVENHRLRIGSFHRVKVYDADDFDLYATIV 432


>gi|147677217|ref|YP_001211432.1| hypothetical protein PTH_0882 [Pelotomaculum thermopropionicum SI]
 gi|146273314|dbj|BAF59063.1| hypothetical protein [Pelotomaculum thermopropionicum SI]
          Length = 310

 Score =  149 bits (376), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 95/276 (34%), Positives = 149/276 (53%), Gaps = 20/276 (7%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +R  + + GC++N Y+S  +  +F  +GY  V   D+AD+ ++NTC +      K    +
Sbjct: 4   KRVAIHTLGCKVNQYESASLAGLFLERGYRLVGFDDEADVYIINTCTVTHLGDRKSRQLI 63

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R      +        L+ V GC AQ    EI +  P V++V+G +   RL +L+E A 
Sbjct: 64  RRASRTNPA-------ALIAVTGCYAQTSPGEIAK-IPGVDLVIGTRDRARLVDLVETAV 115

Query: 145 FGKRVVDT--DYSVEDKFE--RLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
            GK  +    ++   ++FE  R   V G       V AFL IQEGCD FCT+C++PY RG
Sbjct: 116 KGKGPLCAVGEHVAGEEFEEVRALPVQGR------VRAFLKIQEGCDNFCTYCIIPYARG 169

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
              SR   +V++EAR+L+ +G  EI L G    A+ G+ L GE  T + L+  L+ + GL
Sbjct: 170 PMRSRRPERVLEEARELVRSGYKEIVLTGIRTGAY-GRDL-GESLTLAGLMRDLAGVSGL 227

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQ 296
           +RLR ++  P D++D LI+    L+V   +LH+P +
Sbjct: 228 LRLRLSSIEPVDITDELIQTMAGLEVFCRHLHVPAE 263


>gi|224135639|ref|XP_002327268.1| predicted protein [Populus trichocarpa]
 gi|222835638|gb|EEE74073.1| predicted protein [Populus trichocarpa]
          Length = 612

 Score =  149 bits (376), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 120/431 (27%), Positives = 208/431 (48%), Gaps = 24/431 (5%)

Query: 40  DSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGG 99
           DS  M     S GY   +S ++ADL ++NTC ++  +   + + + + ++ K        
Sbjct: 59  DSEYMAGQLSSFGYSLSDSPEEADLWLINTCTVKSPSQSAMDTLISKGKSAKKP------ 112

Query: 100 DLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDK 159
              +VVAGCV Q  G   ++    V++V G Q   R+ E++E    G  V   +      
Sbjct: 113 ---LVVAGCVPQ--GSRNVKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLNR----- 161

Query: 160 FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLID 219
            + L  +D    RK      L I  GC   CT+C   + RG   S ++  +    + +ID
Sbjct: 162 -KTLPALDLPKVRKNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVDSLAGRVKTVID 220

Query: 220 NGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIK 279
           +GV EI L  ++  A+ G+ +        + + +     G   LR   ++P  + + L +
Sbjct: 221 DGVKEIWLSSEDTGAY-GRDIGVNLPILLNAIVAELPSDGSTMLRIGMTNPPFILEHLKE 279

Query: 280 AHGDL--DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIV 337
               L    +  +LH+PVQSGSD IL +MNR +T  E+R ++D +  + P + I++D I 
Sbjct: 280 IAEVLRHPCVYSFLHVPVQSGSDAILTAMNREYTVNEFRTVVDTLTELVPGMQIATDIIC 339

Query: 338 GFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKK 397
           GFPGETD DF  T++L+    +AQ    ++ PR GTP + M ++V  N+  +R   L   
Sbjct: 340 GFPGETDKDFSQTVNLIKAYKFAQVHISQFYPRPGTPAARM-KKVPSNIVKQRSREL-TS 397

Query: 398 LREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITD 457
           + E    +N    G++  + I     +   LVG +     V++ ++   +G    V+IT 
Sbjct: 398 VFEAFTPYN-GMEGRVERIWITDIAADGIHLVGHTKAYVQVLIVAQESMLGTSAIVKITS 456

Query: 458 VKISTLYGELV 468
           V   +++GE++
Sbjct: 457 VGRWSVFGEVI 467


>gi|89069057|ref|ZP_01156438.1| RNA modification enzyme, MiaB-family protein [Oceanicola granulosus
           HTCC2516]
 gi|89045426|gb|EAR51491.1| RNA modification enzyme, MiaB-family protein [Oceanicola granulosus
           HTCC2516]
          Length = 457

 Score =  149 bits (376), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 111/368 (30%), Positives = 166/368 (45%), Gaps = 35/368 (9%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC   + DS R+     ++GY        AD +++NTC   + A  +    +G     
Sbjct: 32  SLGCPKALVDSERILTRLRAEGYAISPDYGGADAVIVNTCGFLDSAKAESLDAIGEALT- 90

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
           +N R        V+V GC+  AE E I    P V  V GP  Y             ++V+
Sbjct: 91  ENGR--------VIVTGCLG-AEPEYITGAHPRVLAVTGPHQY-------------EQVL 128

Query: 151 DTDYSV----EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           D  ++      D F  L    G     R  + +L I EGC+  C FC++P  RG  +SR 
Sbjct: 129 DAVHAAVPPSPDPFIDLLPASGVSLTPRHFS-YLKISEGCNHRCKFCIIPDMRGRLVSRP 187

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAW----RGKGLDGEKCTFSDLLYSLSEIKGLVR 262
              +V EA KL+ NGV E+ ++ Q+ +A+    R     G +    DL   L ++   VR
Sbjct: 188 AHAIVREAEKLVANGVRELLVISQDTSAYGADIRFAEERGHRAHIDDLARDLGQLGAWVR 247

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           L Y   +PR  +   + A G   +++PYL +P Q      LK M R     E    I   
Sbjct: 248 LHYVYPYPRVRNLIPLMAEG---LVLPYLDIPFQHAHPDTLKRMARPSAQTETLAEIAAW 304

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R + PDI + S FIVG+PGET+ +F+  +D +D     +   F+Y    G   +++   V
Sbjct: 305 REICPDITLRSTFIVGYPGETEAEFQYLLDWMDAAQLDRVGCFQYENVAGARSNDLPGHV 364

Query: 383 DENVKAER 390
            E VK ER
Sbjct: 365 PEEVKQER 372


>gi|290956994|ref|YP_003488176.1| radical SAM protein [Streptomyces scabiei 87.22]
 gi|260646520|emb|CBG69617.1| putative radical SAM protein [Streptomyces scabiei 87.22]
          Length = 475

 Score =  149 bits (376), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 125/465 (26%), Positives = 207/465 (44%), Gaps = 42/465 (9%)

Query: 40  DSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGG 99
           DS  +     + G+E V   ++AD+ V+NTC   E A +     L    +LK      G 
Sbjct: 2   DSEELAGRLEADGWELVEDAEEADVAVVNTCGFVEAAKKDSVDALLEANDLKG----HGR 57

Query: 100 DLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE------------------ 141
              VV  GC+A+  G+E+    P  + V+G   Y  + + L+                  
Sbjct: 58  TQAVVAVGCMAERYGKELAEALPEADGVLGFDDYADISDRLQTILNGGIHASHTPRDRRK 117

Query: 142 --------RARFGKRVVDTDYSVEDKFERLSIVDGGYN--RKR---GVTAFLTIQEGCDK 188
                   R      V    ++  D  E L+   G  +  R+R      A + +  GCD+
Sbjct: 118 LLPISPAQRQESAAEVALPGHAPVDLPEGLAPASGPRSPLRRRLDGSPVASVKLASGCDR 177

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS 248
            C+FC +P  RG  ISR  S V++E R L + GV E+ L+ +N N   GK L G+     
Sbjct: 178 RCSFCAIPSFRGSFISRRPSDVLNETRWLAEQGVKEVMLVSEN-NTSYGKDL-GDIRLLE 235

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
            LL  L+E+ G+ R+R +   P +M   LI        ++PY  L  Q  +  +L+SM R
Sbjct: 236 SLLPELAEVDGIERVRVSYLQPAEMRPGLIDVLTSTPKVVPYFDLSFQHSAPAVLRSMRR 295

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
                 + +++D IR   P+  + S+FIVGFPGE++DD       ++         F YS
Sbjct: 296 FGDTDRFLELLDTIRGKAPEAGVRSNFIVGFPGESEDDLAELERFLNGARLDAIGVFGYS 355

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--- 425
              GT  +    ++ E+V AERL  + +   E      +  VGQ + VL+E    E+   
Sbjct: 356 DEDGTEAATYENKLPEDVVAERLARVSRLAEELVSQRAEERVGQTVRVLVESVDGEEGAY 415

Query: 426 GKLVGRSPWLQSVVL--NSKNHNIGDIIKVRITDVKISTLYGELV 468
           G+   ++P     VL  + +  ++G +++ ++   +   L  E++
Sbjct: 416 GRAAHQAPETDGQVLFTSGEELSVGLMVEAKVVGTEGVDLVAEVL 460


>gi|83953520|ref|ZP_00962242.1| RNA modification enzyme, MiaB-family protein [Sulfitobacter sp.
           NAS-14.1]
 gi|83842488|gb|EAP81656.1| RNA modification enzyme, MiaB-family protein [Sulfitobacter sp.
           NAS-14.1]
          Length = 456

 Score =  149 bits (376), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 121/451 (26%), Positives = 205/451 (45%), Gaps = 40/451 (8%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC   + DS R+     ++GY        AD +++NTC   + A  +    +G   N 
Sbjct: 33  SLGCPKALVDSERILTRLRAEGYGVSPDYAGADAVIVNTCGFLDSAKAESLDAIGEALN- 91

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
                 E G   V+V GC+  AE + I    P +  V GP  Y    E +  A  G    
Sbjct: 92  ------ENGK--VIVTGCLG-AEPDYIREHHPRILAVTGPHQY----EQVLDAVHGAVPP 138

Query: 151 DTDYSVED-KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209
             D  ++    + +S+    Y       ++L I EGC+  C FC++P  RG   SR    
Sbjct: 139 SPDPFIDLLPAQAVSLTPRHY-------SYLKISEGCNHKCKFCIIPDMRGRLQSRPAHA 191

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-------GEKCTFSDLLYSLSEIKGLVR 262
           ++ EA KL+ NGV E+ ++ Q+ +A+   G+D       G +   +DL   L  +   VR
Sbjct: 192 ILREAEKLVQNGVNELLVISQDTSAY---GVDIKHAEDRGHRAHITDLARDLGSLGAWVR 248

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           L Y   +P   +   + A G   +++PYL +P Q     +LK M R   A +    I   
Sbjct: 249 LHYVYPYPHVRNLIPLMAEG---LVLPYLDIPFQHAHPDVLKRMARPAAAAKTLDEIAAW 305

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R   PDI + S FIVG+PGET+ +F+  +D +D+    +   F+Y    G   + + + V
Sbjct: 306 RDTCPDITLRSTFIVGYPGETEAEFQTLLDWLDEAQLDRVGCFQYENVDGARSNALPDHV 365

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG--KLVGRSPWLQSVVL 440
            + VK +R     +K +    +  +A VG+ ++V+I++   E    +    +P +   + 
Sbjct: 366 PDEVKQDRWNRFMEKAQAISAAKLEAKVGRRMDVIIDEIDDEAATCRTKADAPEIDGNLF 425

Query: 441 ---NSKNHNIGDIIKVRITDVKISTLYGELV 468
                +N ++G I+ V + +     L+G +V
Sbjct: 426 IDEGFENLSVGQIVTVEVEEAGEYDLWGRVV 456


>gi|149186851|ref|ZP_01865161.1| hypothetical protein ED21_25472 [Erythrobacter sp. SD-21]
 gi|148829518|gb|EDL47959.1| hypothetical protein ED21_25472 [Erythrobacter sp. SD-21]
          Length = 391

 Score =  149 bits (376), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 108/412 (26%), Positives = 185/412 (44%), Gaps = 49/412 (11%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V S GC++N+ +S R+  M   +           +L+V+N+C +  +A  +    + + R
Sbjct: 6   VVSLGCRLNLSESERIRAMLAGED----------NLVVVNSCAVTSEAVRQTRQAIRQAR 55

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
                  K   +  ++V GC A  E ++ L   P V+  +             +A+   R
Sbjct: 56  -------KANPEARLLVTGCAADIERDQ-LAAMPEVDGFIA-----------NKAKLDPR 96

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
             +   S          V   + R     AF+ +Q GCD  CTFCV+P  RG   S +++
Sbjct: 97  AWNVPASAPP-------VQALHTR-----AFVAVQNGCDHACTFCVIPQGRGKSRSLTVA 144

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
           +V+ E    +D G  E+ L G +V +W G  L G     + +   L     L R+R ++ 
Sbjct: 145 EVLREVESHLDTGAGEVVLTGVDVTSW-GHDLPGSLRLGALIRAVLDAFPALTRIRMSSI 203

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
              ++ + L +       +MP++HL +Q G D ILK M RRH   +   ++ R+++ RPD
Sbjct: 204 DGIEVDEELFELFAGEPRVMPHIHLSLQHGHDLILKRMKRRHLRADAVDLVARLKACRPD 263

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           + + +D I GFP ET++   + + ++ ++       F YSPR GTP + M  QV+     
Sbjct: 264 LVVGADLIAGFPTETEEHHASNLSIIRELAILHGHIFPYSPRPGTPAARM-PQVERPTIK 322

Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440
            R   L+ ++ + +  +    V +   VL E  G       G SP    V L
Sbjct: 323 RRAAELRAEVAKLRAEWLRTLVDKPHSVLAEADG------TGYSPHFARVKL 368


>gi|289582599|ref|YP_003481065.1| MiaB-like tRNA modifying enzyme [Natrialba magadii ATCC 43099]
 gi|289532152|gb|ADD06503.1| MiaB-like tRNA modifying enzyme [Natrialba magadii ATCC 43099]
          Length = 417

 Score =  149 bits (375), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 126/449 (28%), Positives = 201/449 (44%), Gaps = 40/449 (8%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R+ +++YGC  N  +S  +E      G+ RV+  D+AD+ +LNTC + EK      + L 
Sbjct: 3   RYHIETYGCTSNRGESREIERRLRDAGHYRVDGPDEADVAILNTCTVVEKTER---NMLR 59

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R   L      E  DL +   GC+A A+GEE  +      V+     +  +PE +     
Sbjct: 60  RAEELST----ETADLFIT--GCMALAQGEEFAQADVDGQVL----HWDEVPEAVTNGEC 109

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                D +           I+D       GV   L I  GC   C++C+     G   S 
Sbjct: 110 PTTTPDAE----------PILD-------GVVGILPIARGCMSDCSYCITKKATGKIDSP 152

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           S+ + V++AR LI  G  EI + GQ+   +   G D  +     LL  +  I+G  R+R 
Sbjct: 153 SIEENVEKARALIHAGAKEIRITGQDTGVY---GWDEGERKLHRLLEEICAIEGDFRVRV 209

Query: 266 TTSHPRDMS---DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
             ++P+ +    + L       D L  +LH PVQSGSD +L  M R+H   EY ++I+  
Sbjct: 210 GMANPKGVHGIREELADVFAANDELYDFLHAPVQSGSDDVLGDMRRQHQVSEYLEVIETF 269

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
             V     +S+DFIVGFP ETD D   +M L+ +    +    ++S R GT  + M + +
Sbjct: 270 DDVLEYWTLSTDFIVGFPTETDHDHEQSMALLRETRPEKINVTRFSKRPGTDAAEM-KGL 328

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIE-VLIEKHGKEKGKLVGRSPWLQSVVLN 441
              VK +R   +    RE         VG+  E VL+ + G         + + Q +V N
Sbjct: 329 GGQVKKDRSKEMSAAKRELVGEAYAEMVGETREDVLVVEQGTADSVKCRDAAYRQIIVQN 388

Query: 442 SKNHNI--GDIIKVRITDVKISTLYGELV 468
           +  + +  GD + + +T  +    +G  V
Sbjct: 389 ASEYGLEPGDFVDLEVTAHETMYAFGTPV 417


>gi|317485886|ref|ZP_07944746.1| MiaB-like tRNA modifying enzyme YliG [Bilophila wadsworthia 3_1_6]
 gi|316922860|gb|EFV44086.1| MiaB-like tRNA modifying enzyme YliG [Bilophila wadsworthia 3_1_6]
          Length = 433

 Score =  149 bits (375), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 121/418 (28%), Positives = 199/418 (47%), Gaps = 32/418 (7%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYE--RVNSMDDADLIVLNTCHIREKAAEK-VYS 82
           R +  S GC  N  D+   E +  S G     V S D+A+L+ +NTC   + A E+ V +
Sbjct: 6   RCYSTSLGCPKNRVDT---ERLLGSLGVALVPVESPDEAELVFINTCAFIQPATEESVRT 62

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGC-VAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
               I +++    +     L+ VAGC V +   E++    P V++ +        P +L 
Sbjct: 63  IAQAIADIEELPKRP----LLAVAGCLVGRYHAEDLAPELPEVDLWLDNSDLEAWPAMLA 118

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           R     ++   + +V  +     I+  G +      A+L I +GC   C+FC +P  RG 
Sbjct: 119 R-----KLGLPEPTVPGR-----ILSTGPS-----YAWLKISDGCRHACSFCAIPNIRGG 163

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
             S     +V EAR L+D GV E+ L+ Q++  W G  L+G K     LL  L  ++GL 
Sbjct: 164 HRSHCKDMIVREARALLDQGVKELNLVAQDLTEW-GCDLNG-KQDLRTLLDGLLPLQGLE 221

Query: 262 RLRYTTSHPRDMSDCLIKAHGDL-DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
           RLR    +P  M+  ++K   +     +PY  +PVQ     +L  M R   A   R+ ID
Sbjct: 222 RLRLMYLYPAGMTHEMLKYLREAGKPFVPYFDVPVQHSHPDVLSRMGRPF-ARNPREAID 280

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           RIR+V P+ A+ +  +VGFPGET++ F    + ++++ +     F Y    GTP + M +
Sbjct: 281 RIRNVFPEAALRTSIMVGFPGETEEHFEHLREFIEEVRFQHLGVFAYRAEEGTPAAAMPD 340

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSPWLQS 437
           QV++ VK  R   L +   +    +     G  + +L++  H +  G   GR+ W Q+
Sbjct: 341 QVEDRVKEWRRDLLMEAQADISAEWLSRFEGDRLPILVDAPHPEWPGLHTGRA-WFQA 397


>gi|308801795|ref|XP_003078211.1| CDK5 activator-binding protein (ISS) [Ostreococcus tauri]
 gi|116056662|emb|CAL52951.1| CDK5 activator-binding protein (ISS) [Ostreococcus tauri]
          Length = 558

 Score =  149 bits (375), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 105/361 (29%), Positives = 170/361 (47%), Gaps = 33/361 (9%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + FV ++GC  N  DS  M     S GYE V    DAD  ++NTC ++  +   + + L 
Sbjct: 34  KIFVHTFGCSHNHSDSEFMAGQLQSYGYELVKDASDADGWLVNTCTVKNPSQSAMNTVLE 93

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAE-GEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           R          +  +  ++VAGCV Q + G + L+   ++ V        R+ E +ER  
Sbjct: 94  R---------GKAANKALLVAGCVPQGDKGAKELKDVSLLGVT----QIDRVVEAMERTL 140

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G    DT   +E K   L  +D    R+      L +  GC   CT+C   + RG   S
Sbjct: 141 AG----DTVRMLEKK--TLPRLDLPKVRRNEFVEILPLSTGCLGACTYCKTKHARGDLGS 194

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
             +S +V    + I  GV E+ L  ++  A+ G  L  +       + ++    G V LR
Sbjct: 195 YEISALVSRVEQAISEGVSEVWLSSEDTGAY-GIDLGTDVAALFRAITAVLPTDGSVMLR 253

Query: 265 YTTSHPRDMSDCLIKAHGDL-------DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
              ++P       I AH D          +  ++H+PVQSGS+ +L++M R +T  E+R 
Sbjct: 254 LGMTNPP-----YILAHLDAVAEAMRHPAVYAWMHIPVQSGSNAVLEAMKREYTVEEFRT 308

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
           + D +    P + I++D I GFPGETD+ +R TM L+++  + +    ++ PR GTP + 
Sbjct: 309 VCDTLLEAVPGMVIATDVICGFPGETDEQWRETMQLIEEYKFPEVHISQFYPRPGTPAAR 368

Query: 378 M 378
           M
Sbjct: 369 M 369


>gi|21674219|ref|NP_662284.1| hypothetical protein CT1398 [Chlorobium tepidum TLS]
 gi|81791059|sp|Q8KCL7|RIMO_CHLTE RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|21647384|gb|AAM72626.1| conserved hypothetical protein [Chlorobium tepidum TLS]
          Length = 434

 Score =  149 bits (375), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 119/423 (28%), Positives = 202/423 (47%), Gaps = 28/423 (6%)

Query: 28  FVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC-HIREKAAEKVYSFLGR 86
           F+ S GC  N  DS R+     + G    +++D+AD+I++NTC  I++   E +   L  
Sbjct: 12  FLLSLGCSKNTVDSERLTAQAVASGLTFTDNVDEADIILINTCGFIKDAKQESIDETLAA 71

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           I   +   ++E     V V GC+ +   +E+    P ++ + G +    LPE+L  A  G
Sbjct: 72  IGKKEEGVVRE-----VYVMGCLVELYRKELAEEMPEIDGLFGTR---ELPEVL--AAIG 121

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
            +        E+ F+R  ++   +       AFL I EGC++ C+FC +P  RG  +S+ 
Sbjct: 122 AKYR------EELFDRRELLTPPH------YAFLKIAEGCNRRCSFCSIPKIRGPYVSQP 169

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
           + Q++ EA  L   GV E+ L+ Q+++ + G  L G K   +DL   LS++ G   +R  
Sbjct: 170 IEQLLREAALLQQQGVKELNLIAQDISVY-GYDLYG-KSALNDLTLRLSDM-GFNWIRLL 226

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
            ++P +    +I    +   +  Y+ +P+Q  +DRILKSM R        Q+ID IR   
Sbjct: 227 YAYPLNFPLEVISTMRERPNVCNYIDMPLQHINDRILKSMQRGIGRKATEQLIDDIRQKN 286

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           PDI + +  I G+PGET  +F   +D + +  + +   F Y          + + V +  
Sbjct: 287 PDIRLRTTMIAGYPGETRAEFEELLDFIRQTRFDRLGCFPYRHEEHASAYALEDTVSDEE 346

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHN 446
           K +R+  L +       S N    GQ ++VLI++   E+     R+ +    V N     
Sbjct: 347 KEKRVGELMELQEGISASLNRKLEGQTLKVLIDRI--EESVAYARTEYDAPEVDNDVIIE 404

Query: 447 IGD 449
           IGD
Sbjct: 405 IGD 407


>gi|254460309|ref|ZP_05073725.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Rhodobacterales
           bacterium HTCC2083]
 gi|206676898|gb|EDZ41385.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Rhodobacteraceae
           bacterium HTCC2083]
 gi|297184460|gb|ADI20575.1| hypothetical protein [uncultured alpha proteobacterium
           EB080_L84F03]
          Length = 463

 Score =  149 bits (375), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 127/464 (27%), Positives = 206/464 (44%), Gaps = 52/464 (11%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R  + S GC   + DS R+     ++GY        AD +++NTC   + A  +    +G
Sbjct: 28  RIGMVSLGCPKALVDSERILTRLRAEGYGISPDYSGADAVIVNTCGFLDSAKAESLDAIG 87

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                    ++E G   V+V GC+  AE + I    P +  V GP  Y            
Sbjct: 88  EA-------LQENGK--VIVTGCLG-AEPDYIREHHPKILAVTGPHQY------------ 125

Query: 146 GKRVVDTDYSV----EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
            ++V+D  +S      D F  L    G     R  + +L I EGC+  C FC++P  RG 
Sbjct: 126 -EQVLDAVHSAAPPSPDPFVDLLPTSGVSLTPRHYS-YLKISEGCNHKCKFCIIPDMRGR 183

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQN-----------VNAWRGKGLDGE-KCTFSD 249
             SR    V+ EA KL+++GV E+ ++ Q+           VN W+    DGE +   +D
Sbjct: 184 LASRPAHAVLREAEKLVESGVKELLVISQDTSAYGLDRKYDVNPWK----DGEVRSHITD 239

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV-LMPYLHLPVQSGSDRILKSMNR 308
           L   + ++   VRL Y   +P      LI    D +  L+PYL +P Q     +LK M R
Sbjct: 240 LSREMGKLGAWVRLHYVYPYPSVRE--LIPLMADPESGLLPYLDIPFQHAHPDVLKRMAR 297

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
                +    I   R+  PDI + S FIVG+PGET+ +F+  +D +D+    +   F+Y 
Sbjct: 298 PAAGSKTLDEIAAWRATCPDITLRSTFIVGYPGETEQEFQTLLDWMDEAQLDRVGCFQYE 357

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-- 426
              G   + + + V   VK ER     +K +    +   A VG  +EV++++   E    
Sbjct: 358 NVDGARSNALPDHVPNEVKQERWDRFMEKAQAISEAKLAAKVGTRMEVIVDEIDDEAATC 417

Query: 427 KLVGRSPWLQSVVLNSKNH---NIGDIIKVRITDVKISTLYGEL 467
           +    +P +   +   + +   N+GDI+ V + +     L+G L
Sbjct: 418 RTKADAPEIDGNLFIDEGYEGLNVGDIVTVTVDEAGEYDLWGIL 461


>gi|261879949|ref|ZP_06006376.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
 gi|270333372|gb|EFA44158.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
          Length = 445

 Score =  149 bits (375), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 116/401 (28%), Positives = 188/401 (46%), Gaps = 22/401 (5%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N  ++     M    G       + AD+ ++NTC + E A  K    + R+   
Sbjct: 16  TLGCKLNFSETSTFGKMLEQMGVTSAGKGERADICLINTCSVTEVADRKCRQAIHRM--- 72

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPI--VNVVVGPQTYYRLPELLERARFGKR 148
               ++E  D LVVV GC AQ EGE++   S I  V++V+G      L + L  A    R
Sbjct: 73  ----VREHPDALVVVTGCYAQLEGEKV---SQIDGVDLVLGSNEKADLIQHLSEAWSDPR 125

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
                     K   +        R      FL +Q+GC  FCT+C +P+ RG   + S++
Sbjct: 126 AQALHQFRGVKTSDIVSFQPSCARGNRTRYFLKVQDGCSYFCTYCTIPFARGRSRNPSIA 185

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
            +V +A +    G  EI L G N+  + G+   GE+  F DL+ +L  ++G+ R R ++ 
Sbjct: 186 SLVAQAEEAAAEGGREIVLTGVNIGDF-GR-TTGER--FIDLVKALDRVEGIQRYRISSL 241

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
            P  + D LI         MP+ H+P+QSGSD +L  M R +    + + I  I+   PD
Sbjct: 242 EPDLLDDELIDYCAHSRAFMPHFHIPLQSGSDEVLTLMRRHYDTALFARKIHLIKQKMPD 301

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG---SNMLEQVDEN 385
             I  D +VG  GE  + F  + + ++ +  +Q   F YS R GT       ++   D+ 
Sbjct: 302 AFIGVDVMVGCRGEKPEYFEDSYNFLNALPVSQLHVFPYSERPGTAALRIPYVVSDADKK 361

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG 426
            +++RLL L     ++  +F    VG+  EVL E+  + K 
Sbjct: 362 QRSKRLLELSD---QKTQAFYAQYVGREAEVLFERATRGKA 399


>gi|241761947|ref|ZP_04760032.1| MiaB-like tRNA modifying enzyme [Zymomonas mobilis subsp. mobilis
           ATCC 10988]
 gi|241373627|gb|EER63199.1| MiaB-like tRNA modifying enzyme [Zymomonas mobilis subsp. mobilis
           ATCC 10988]
          Length = 419

 Score =  149 bits (375), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 124/442 (28%), Positives = 213/442 (48%), Gaps = 38/442 (8%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRI-RN 89
           + GC++N+ +S  ++     +   +       DLIV+N+C +  +A  +    + +  R 
Sbjct: 8   TLGCRLNIAESEAIKQALTDKDGSQ-------DLIVVNSCAVTSRAVAQTRQAIRKASRE 60

Query: 90  LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-----ERAR 144
             N+RI        VV GC AQ +  +I    P V+ V+G    ++          E AR
Sbjct: 61  RPNARI--------VVTGCAAQID-PKIFADMPEVSRVIGNVEKHQAESFAFSGSDEEAR 111

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
              +V D + S+++    L      ++R     AFL IQ GC+  C+FC++P  RG   S
Sbjct: 112 I--QVTDIN-SLKETTPHLIAAFSEHSR-----AFLEIQNGCNHHCSFCIIPQGRGRNRS 163

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
            S   ++D ARKLI+NG  E+ L G ++ ++ G+ L         + + L ++K L RLR
Sbjct: 164 ASFDDILDCARKLINNGHQELVLTGVDLTSY-GQDLTSPSNLGELVAFLLKKLKNLKRLR 222

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
            ++  P  +   L+    + + +MP++HL +Q+G + ILK M RRH+  +  +++  ++ 
Sbjct: 223 LSSLDPDGIDPLLMALITEDERIMPHIHLSLQAGDNTILKRMRRRHSREQAIELVASLKK 282

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
            RP+IAI +D I GFP E ++    ++ ++D+        F YSPR GTP + M  QV  
Sbjct: 283 RRPEIAIGADIIAGFPTEDEEMAANSLRMIDECDIVFGHIFPYSPRQGTPAAKM-PQVHT 341

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
            +  ER   L++    +Q  +    VG    VL+E  G       G +P    + L+   
Sbjct: 342 PLIKERAQKLREAANRRQAEWLKTLVGSRQSVLLEGEGGR-----GHTPQFAPIRLSEAV 396

Query: 445 HNIGDIIKVRITDVKISTLYGE 466
              G I+ + +T      L G+
Sbjct: 397 EASG-IVDIMVTGTDKDGLIGK 417


>gi|157736477|ref|YP_001489160.1| MiaB-like tRNA modifying enzyme [Arcobacter butzleri RM4018]
 gi|238065288|sp|A8ERB7|RIMO_ARCB4 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|157698331|gb|ABV66491.1| MiaB-like tRNA modifying enzyme [Arcobacter butzleri RM4018]
          Length = 446

 Score =  149 bits (375), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 118/445 (26%), Positives = 219/445 (49%), Gaps = 31/445 (6%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ DS  M        Y+  +   +AD+I++NTC   + A ++    +  I +L
Sbjct: 16  SLGCTKNLVDSEVMLGRL--SDYQLTDDAQNADVIIVNTCGFIDSAKQES---INTILSL 70

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL--ERARFGKR 148
              R  E    ++V+AGC+++   EE+ +  P ++V  G   Y R+ EL+  +R+ F   
Sbjct: 71  HEDRKNES---VLVMAGCLSERYKEELQKELPEIDVFTGVGDYDRIDELVNEKRSNFTSE 127

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           V    +   +  ER+ I    Y+      A++ + EGC++ C+FC +P  +G   SR+L 
Sbjct: 128 V----FLASETNERV-ITGSSYH------AYVKLSEGCNQACSFCAIPSFKGKLHSRTLQ 176

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
            +V E + L+  G  + + + Q+ +++  + LD  K     L+  + +I+G+   R    
Sbjct: 177 SLVKEVKALVAKGYVDFSFVSQDSSSFL-RDLDI-KNGLELLVEEVEKIEGIKTARILYL 234

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
           +P   +  LI    D  V + Y  +P+Q  +  +LK M R     +  ++++ ++S +P+
Sbjct: 235 YPSTTTLSLIDKIADSKVFVNYFDMPLQHITPSMLKIMKRGKGVEQLNELMNHMKS-KPN 293

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
             + + FI G PGET+DDF A  + V+   + +A  F YS   GT      ++V++ +  
Sbjct: 294 SFVRTTFIAGHPGETEDDFEALCNYVENFKFDRANVFSYSDEEGTTAETRTDKVEQELID 353

Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG--RSPWLQS----VVLNS 442
           ER   L + + +      ++ VG+  EV I+   +E   L+   ++ W  S    + +N 
Sbjct: 354 ERAEVLGEIISQTTQESLESEVGKTFEVYIDGESEEHEYLLSARKTIWAPSIDGEIYIND 413

Query: 443 KNHNIGDIIKV-RITDVKISTLYGE 466
              + G+ IK  +I  VKI+ L G+
Sbjct: 414 NELSEGEQIKFGQIYTVKITELVGD 438


>gi|256784823|ref|ZP_05523254.1| hypothetical protein SlivT_10053 [Streptomyces lividans TK24]
          Length = 475

 Score =  149 bits (375), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 118/411 (28%), Positives = 185/411 (45%), Gaps = 37/411 (9%)

Query: 40  DSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGG 99
           DS  +     + G++ V+  ++AD+ V+NTC   E A +     L    +LK      G 
Sbjct: 2   DSEELAGRLEADGWKLVDDAEEADVAVVNTCGFVEAAKKDSVDALLEANDLKG----HGR 57

Query: 100 DLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL------------------- 140
              VV  GC+A+  G+E+    P  + V+G   Y  + + L                   
Sbjct: 58  TQAVVAVGCMAERYGKELADALPEADGVLGFDDYADISDRLQTILNGGIHAAHTPRDRRK 117

Query: 141 -------ERARFGKRVVDTDYSVEDKFERLSIVDGGYN--RKR---GVTAFLTIQEGCDK 188
                  ER   G  V    +   D  E ++   G     R+R      A + +  GCD+
Sbjct: 118 LLPISPAERQEAGAAVALPGHGPTDLPEGVAPASGPRAPLRRRLDGSPVASVKLASGCDR 177

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS 248
            C+FC +P  RG  ISR  S V++E R L + GV EI L+ +N N   GK L G+     
Sbjct: 178 RCSFCAIPSFRGSFISRRPSDVLNETRWLAEQGVKEIMLVSEN-NTSYGKDL-GDIRLLE 235

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
            LL +L+E+ G+ R+R +   P +M   LI      + + PY  L  Q  +  +L++M R
Sbjct: 236 SLLPNLAEVDGIERVRVSYLQPAEMRPGLIDVLTSTEKVAPYFDLSFQHSAPNVLRAMRR 295

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
                 + +++D IRS  P+  + S+FIVGFPGE++ D       ++         F YS
Sbjct: 296 FGDTDRFLELLDTIRSKAPEAGVRSNFIVGFPGESEADLAELERFLNHARLDAIGVFGYS 355

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419
              GT  +   +++DE+V AERL  + +   E      D  VG  + VL+E
Sbjct: 356 DEEGTEAATYGDKLDEDVVAERLARVSRLAEELVSQRADERVGATVRVLVE 406


>gi|57234236|ref|YP_181685.1| MiaB family tRNA modification protein [Dehalococcoides ethenogenes
           195]
 gi|57224684|gb|AAW39741.1| tRNA modification enzyme, MiaB family [Dehalococcoides ethenogenes
           195]
          Length = 413

 Score =  148 bits (374), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 104/392 (26%), Positives = 186/392 (47%), Gaps = 32/392 (8%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           + + GC++N  ++      F   GY  V+  D+ D+ +LN+C +   A  K      R +
Sbjct: 6   LDTLGCKLNQAETEAFGREFARAGYRLVSPQDNWDIYILNSCTVTHVADRKA-----RYQ 60

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
                R    G   + + GC AQ  G+++    P  +++            L+  R    
Sbjct: 61  IRIARRHNPAG--FICLMGCYAQNGGDKL--SCPDADLI------------LDNCRKSGI 104

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
             +       +    S+ + G  R     +F+ IQ+GCD FC++C+VP+ R  +  R + 
Sbjct: 105 AAEISRLFPPEALAPSLYENGRTR-----SFIKIQDGCDNFCSYCIVPFVRRHKSCRRVD 159

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
           +++ E       G  EI L G  +  +   G+D      + L+ ++     + RLR ++ 
Sbjct: 160 EIISEINLRQAEGYQEIVLTGTEIGEYASGGVD-----LAGLIEAILANTQIPRLRLSSL 214

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
            P +++  L+ A  +   L  + H+ +QSGSD IL  M R ++  +Y + ++ IRS  P 
Sbjct: 215 QPGEITPRLL-ALWENPRLCRHFHMALQSGSDCILALMRRPYSLGDYNRALEAIRSQVPG 273

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
            A+++D IVGFPGET++DF  ++  + + G+A+  +F YS RLGT  S M  ++D +V  
Sbjct: 274 AAVTTDLIVGFPGETEEDFALSLKYIQQAGFARVHAFPYSERLGTLASGMEGKIDPSVIK 333

Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
           +RL  +    +   + +     G   EVL E 
Sbjct: 334 KRLSLVMAAAKSVSMQYRRQSKGLGKEVLWEN 365


>gi|260752486|ref|YP_003225379.1| MiaB-like tRNA modifying enzyme [Zymomonas mobilis subsp. mobilis
           NCIMB 11163]
 gi|258551849|gb|ACV74795.1| MiaB-like tRNA modifying enzyme [Zymomonas mobilis subsp. mobilis
           NCIMB 11163]
          Length = 419

 Score =  148 bits (374), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 124/442 (28%), Positives = 213/442 (48%), Gaps = 38/442 (8%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRI-RN 89
           + GC++N+ +S  ++     +   +       DLIV+N+C +  +A  +    + +  R 
Sbjct: 8   TLGCRLNIAESEAIKQALTDKDGSQ-------DLIVVNSCAVTSRAVAQTRQAIRKASRE 60

Query: 90  LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-----ERAR 144
             N+RI        VV GC AQ +  +I    P V+ V+G    ++          E AR
Sbjct: 61  RPNARI--------VVTGCAAQID-PKIFADMPEVSRVIGNVEKHQAESFAFSGNDEEAR 111

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
              +V D + S+++    L      ++R     AFL IQ GC+  C+FC++P  RG   S
Sbjct: 112 I--QVTDIN-SLKETTPHLIAAFSEHSR-----AFLEIQNGCNHHCSFCIIPQGRGRNRS 163

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
            S   ++D ARKLI+NG  E+ L G ++ ++ G+ L         + + L ++K L RLR
Sbjct: 164 ASFDDILDCARKLINNGHQELVLTGVDLTSY-GQDLTSPSNLGELVAFLLKKLKNLKRLR 222

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
            ++  P  +   L+    + + +MP++HL +Q+G + ILK M RRH+  +  +++  ++ 
Sbjct: 223 LSSLDPDGIDPLLMALITEDERIMPHIHLSLQAGDNTILKRMRRRHSREQAIELVASLKK 282

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
            RP+IAI +D I GFP E ++    ++ ++D+        F YSPR GTP + M  QV  
Sbjct: 283 RRPEIAIGADIIAGFPTEDEEMAANSLRMIDECDIVFGHIFPYSPRQGTPAAKM-PQVHT 341

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
            +  ER   L++    +Q  +    VG    VL+E  G       G +P    + L+   
Sbjct: 342 PLIKERAQKLREAANRRQAEWLKTLVGSRQSVLLEGEGGR-----GHTPQFAPIRLSEAV 396

Query: 445 HNIGDIIKVRITDVKISTLYGE 466
              G I+ + +T      L G+
Sbjct: 397 EASG-IVDIMVTGTDKDGLIGK 417


>gi|313886783|ref|ZP_07820489.1| tRNA methylthiotransferase YqeV [Porphyromonas asaccharolytica
           PR426713P-I]
 gi|312923747|gb|EFR34550.1| tRNA methylthiotransferase YqeV [Porphyromonas asaccharolytica
           PR426713P-I]
          Length = 454

 Score =  148 bits (374), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 109/420 (25%), Positives = 202/420 (48%), Gaps = 36/420 (8%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDD------ADLIVLNTCHIREK 75
           +V +R    + GC++N  ++  +     + G ER++           D+ ++N+C + + 
Sbjct: 10  LVGKRAAFYTLGCRLNYAETSTIARQLATVGVERISDEHHHTTEVVPDICIVNSCSVTDT 69

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135
           A +K  S + R+        +E  + L+VV GC AQ +G+ I +  P V++VVG      
Sbjct: 70  ADKKCRSLINRLH-------REYPEALIVVTGCYAQLQGDRIAQ-MPGVDLVVGSGRKSE 121

Query: 136 LPELL-------ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
           +  LL        + R   +V     +   + +         +R R    FL +Q+GC+ 
Sbjct: 122 IVSLLTELYQKRNQERTQPQVATPHVTARRELQHFEPSVSSDDRTRH---FLKVQDGCNY 178

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS 248
           +CT+C +P  RGI  + S++ +V +A ++ + G  EI L G N+  + G+   GE  T  
Sbjct: 179 YCTYCTIPAARGISRNGSIASLVAQAERVAELGGKEIILTGVNIGDF-GR-TTGE--TLL 234

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
           +LL+ L+++ G+ R R  +  P  ++  +I+   +    MP+ H+P+QSGSD++L+ M R
Sbjct: 235 ELLHQLTQVAGIARYRIGSIEPELLTPEIIQFVAETAQFMPHFHIPLQSGSDQVLRLMRR 294

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
            +    + + +  I  + PD  +  D I G  GE  +    T+  + +  ++Q   F YS
Sbjct: 295 HYDTALFAERLKLIYELIPDAFVGVDVIAGMRGELSEHHAETLAFLKEQPWSQLHVFPYS 354

Query: 369 PRLGTPGSNMLEQV---DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE--KHGK 423
            R GT    +   V   ++ ++ + LL L     E+  +F     G +  VL E  +HG+
Sbjct: 355 ERKGTKALEIKPAVPAAEKKLRTQELLALSS---ERHNAFCAPFTGSVRPVLWEETRHGE 411


>gi|56551967|ref|YP_162806.1| MiaB-like tRNA modifying enzyme [Zymomonas mobilis subsp. mobilis
           ZM4]
 gi|56543541|gb|AAV89695.1| MiaB-like tRNA modifying enzyme [Zymomonas mobilis subsp. mobilis
           ZM4]
          Length = 419

 Score =  148 bits (374), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 124/442 (28%), Positives = 212/442 (47%), Gaps = 38/442 (8%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRI-RN 89
           + GC++N+ +S  ++           +     DLIV+N+C +  +A  +    + +  R 
Sbjct: 8   TLGCRLNIAESEAIKQAL-------TDKEGSQDLIVVNSCAVTSRAVAQTRQAIRKASRE 60

Query: 90  LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-----ERAR 144
             N+RI        VV GC AQ +  +I    P V+ V+G    ++          E AR
Sbjct: 61  RPNARI--------VVTGCAAQID-PKIFADMPEVSRVIGNVEKHQAESFAFSGNDEEAR 111

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
              +V D + S+++    L      ++R     AFL IQ GC+  C+FC++P  RG   S
Sbjct: 112 I--QVTDIN-SLKETTPHLIAAFSEHSR-----AFLEIQNGCNHHCSFCIIPQGRGRNRS 163

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
            S   ++D ARKLI+NG  E+ L G ++ ++ G+ L         + + L ++K L RLR
Sbjct: 164 ASFDDILDCARKLINNGHQELVLTGVDLTSY-GQDLTSPSNLGELVAFLLKKLKNLKRLR 222

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
            ++  P  +   L+    + + +MP++HL +Q+G + ILK M RRH+  +  +++  ++ 
Sbjct: 223 LSSLDPDGIDPLLMALITEDERIMPHIHLSLQAGDNTILKRMRRRHSREQAIELVASLKK 282

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
            RP+IAI +D I GFP E ++    ++ ++D+        F YSPR GTP + M  QV  
Sbjct: 283 RRPEIAIGADIIAGFPTEDEEMAANSLRMIDECDIVFGHIFPYSPRQGTPAAKM-PQVHT 341

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
            +  ER   L++    +Q  +    VG    VL+E  G       G +P    + L+   
Sbjct: 342 PLIKERAQKLREAANRRQAEWLKTLVGSRQSVLLEGEGGR-----GHTPQFAPIRLSEAV 396

Query: 445 HNIGDIIKVRITDVKISTLYGE 466
              G I+ + +T      L G+
Sbjct: 397 EASG-IVDIMVTGTDKDGLIGK 417


>gi|134095120|ref|YP_001100195.1| ribosomal protein S12 methylthiotransferase [Herminiimonas
           arsenicoxydans]
 gi|238066316|sp|A4G6D4|RIMO_HERAR RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|133739023|emb|CAL62071.1| Conserved hypothetical protein [Herminiimonas arsenicoxydans]
          Length = 454

 Score =  148 bits (374), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 125/476 (26%), Positives = 221/476 (46%), Gaps = 62/476 (13%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
            P+  FV S GC   + DS ++     ++GY+   S D ADL+++NTC   + A ++   
Sbjct: 8   TPKIGFV-SLGCPKALVDSEQILTQLRAEGYDTAKSYDGADLVIVNTCGFIDAAVQESLD 66

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQ---AEGEEILRR-SPIVNVVVGPQTYYRLPE 138
            +G   + +N R        V+V GC+     A G++I+++  P V  V GP   + L E
Sbjct: 67  AIGEALH-ENGR--------VIVTGCLGAKKDANGDDIIQKVHPKVLAVTGP---HALGE 114

Query: 139 LLERARFGKRVVDTDYSVEDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197
           +++            +  +     L ++   G        A+L I EGC+  C+FC++P 
Sbjct: 115 VMDAVHL--------HMPKPHAPFLDLLPPQGIKLTPKHFAYLKISEGCNHRCSFCIIPS 166

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCT 246
            RG  +SR ++ V+ EA  L   GV E+ ++ Q+ +A           W GK +   K  
Sbjct: 167 MRGDLVSRPIADVMMEAENLFKAGVKELLVISQDTSAYGVDIKFRMGFWNGKPV---KTH 223

Query: 247 FSDLLYSLSEIKG----LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
            + L+ +L E+       VRL Y   +P   +   + A G +   +PYL +P+Q     +
Sbjct: 224 MTQLVEALGELAAPYGAWVRLHYVYPYPHVDAIIPMMAEGKI---LPYLDVPLQHAHPDV 280

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           LK M R  +  +  + I   R++ PD+ I S FI GFPGET+ +F   +D + +    + 
Sbjct: 281 LKRMKRPASGEKNIERIQAWRAMCPDLTIRSTFIAGFPGETEAEFEYLLDFLKEAEIDRL 340

Query: 363 FSFKYSPRLGTPGSNMLEQVD---ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419
             F YSP  G   +++   V       +  R++ LQ+++ ++++    A VG+ + VLI+
Sbjct: 341 GCFAYSPVEGATANDLPNAVPEEVREERRGRVMLLQEEISKKRLQ---AKVGKTMRVLID 397

Query: 420 ---KHGKEKGKLVGRSPWLQSVVLNSK------NHNIGDIIKVRITDVKISTLYGE 466
              + G    +    +P +  VV           + +G+ + V+IT      L+ E
Sbjct: 398 EVNRTGAATARSGADAPEIDGVVYVKAPYEPHIKYKVGEFVDVKITGADAHDLWAE 453


>gi|307190740|gb|EFN74642.1| CDKAL1-like protein [Camponotus floridanus]
          Length = 542

 Score =  148 bits (374), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 121/463 (26%), Positives = 211/463 (45%), Gaps = 45/463 (9%)

Query: 22  IVP--QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEK 79
           I+P  Q  +VK++GC  N  D+  M       GY   +    ADL +LN+C ++  A ++
Sbjct: 56  IIPGTQTIYVKTWGCTHNNSDTEYMAGQLAMYGYNLSDDKLKADLWLLNSCTVKNPAEDQ 115

Query: 80  VYSFLGRIRNLKNSRIKEGGDL--LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLP 137
                   RN     I+ G  +   +V+AGCV Q   +    +      ++G Q   R+ 
Sbjct: 116 -------FRN----EIEHGKKIGKHIVIAGCVPQGAPKSSFLQG---LSIIGVQQIDRVV 161

Query: 138 ELLERARFGK--RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
           E++E    G   R +    +   K    S+      R+  +   + I  GC   CT+C  
Sbjct: 162 EVVEETLKGNTVRFLHQKKNSGKKMGGASLSLPKV-RRNPLIEIIAINTGCLNQCTYCKT 220

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
            + RG   S    ++V+ A++  + GVCE+ L  ++  A+ G+ +     +  +LL+ L 
Sbjct: 221 KHARGELGSYQPEEIVERAKQAFEEGVCELWLTSEDTGAY-GRDIG---TSLPELLWKLV 276

Query: 256 EI--------KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307
           ++         G+    Y   H  +M+  L         +  +LH+PVQSGSD++L  M 
Sbjct: 277 DVIPDGCMMRVGMTNPPYILEHLDEMAKILRHPK-----VYSFLHIPVQSGSDQVLADMR 331

Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           R +T  ++   ++ +    P + I++D I GFP ET+ DF  TM L  K  +   F  ++
Sbjct: 332 REYTRADFEHTVNFLSERVPGLTIATDIICGFPTETEVDFEETMALCQKYKFPSLFINQF 391

Query: 368 SPRLGTPGSNMLEQVDENVKAERLLCLQKKLRE--QQVSFNDACVGQIIEVLIEKHGKEK 425
             R GTP + M +   + VK        K+L E  Q        VG + +VLI +   +K
Sbjct: 392 FSRPGTPAARMPKVPTQEVKTR-----TKRLSEFFQSYEPYQHKVGLLQKVLITEMSHDK 446

Query: 426 GKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
              VG + + + V++  +   +G +I V+IT+    ++ GE +
Sbjct: 447 QHYVGHNKFYEQVLIPMEERYLGKMIDVKITEATKFSMKGEPI 489


>gi|300312296|ref|YP_003776388.1| 2-methylthioadenine synthetase [Herbaspirillum seropedicae SmR1]
 gi|300075081|gb|ADJ64480.1| 2-methylthioadenine synthetase protein [Herbaspirillum seropedicae
           SmR1]
          Length = 458

 Score =  148 bits (374), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 125/473 (26%), Positives = 216/473 (45%), Gaps = 59/473 (12%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           +P+  FV S GC   + DS ++     ++GY+   S D ADL+++NTC   + A ++   
Sbjct: 12  LPKVGFV-SLGCPKALVDSEQILTQLRAEGYDTAKSYDGADLVIVNTCGFIDAAVQESLD 70

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQ---AEGEEILRR-SPIVNVVVGPQTYYRLPE 138
            +G   N +N +        V+V GC+     AEG++I+++  P V  V GP     + +
Sbjct: 71  AIGEALN-ENGK--------VIVTGCLGAKKDAEGDDIIQKIHPKVLEVTGPHAVGEVMQ 121

Query: 139 LLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
            + +          D           +   G        A+L I EGC+  C+FC++P  
Sbjct: 122 AVHKHLPKPHAPFIDL----------VPPQGVKLTPKHFAYLKISEGCNHRCSFCIIPSM 171

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTF 247
           RG  +SR ++ V+ EA  L   GV E+ ++ Q+ +A           W GK +   K   
Sbjct: 172 RGDLVSRPIADVMLEAENLFKAGVKELLVISQDTSAYGVDVKFRTGFWNGKPV---KTHM 228

Query: 248 SDLLYSLSEIK----GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
           + L+ +L E+       VRL Y   +P       + A G    ++PYL +P+Q     +L
Sbjct: 229 TQLVGALGELAQQYGAWVRLHYVYPYPHVDQIIPMMAEGK---ILPYLDVPLQHAHPDVL 285

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           K M R     +  + I   R++ PD+ I S FI GFPGET+ +F   +D + +    +  
Sbjct: 286 KRMKRPANGEKNIERIQAWRAMCPDLTIRSTFIAGFPGETEAEFEYLLDFLKEAEIDRLG 345

Query: 364 SFKYSPRLGTPG---SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
            F YSP  G      +N + +     +  R++ LQ+++ ++++    A VG+ + VLI++
Sbjct: 346 CFAYSPVEGATANEIANPVPEEVREERRGRVMQLQEEISKKRLQ---AKVGKTLRVLIDE 402

Query: 421 HGKE--KGKLVGRSPWLQSVVL------NSKNHNIGDIIKVRITDVKISTLYG 465
             +    G+    +P +  VV         +   +G  + VRIT      L+G
Sbjct: 403 VDRNGGTGRTYSDAPEIDGVVYVKPPFEPHRKLEVGQFVDVRITAADAHDLWG 455


>gi|116328778|ref|YP_798498.1| 2-methylthioadenine synthetase [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|122283437|sp|Q04ZD0|RIMO_LEPBL RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|116121522|gb|ABJ79565.1| 2-methylthioadenine synthetase [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
          Length = 439

 Score =  148 bits (374), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 94/367 (25%), Positives = 176/367 (47%), Gaps = 12/367 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++F++ + GC  N  DS+ M      +G+      +++D   +NTC   + A E+    +
Sbjct: 3   KKFYITTLGCPKNTADSMSMHHSLLEEGFTPATFAEESDFHFINTCTFIQSATEETIQTI 62

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
                L  +++K+     +VV GC A+   + I    P V++  G   Y +  ++L R +
Sbjct: 63  -----LSAAQVKKQNHQKLVVVGCFAERYPDNISSEIPEVDLFFGTGRYAQAGKIL-REK 116

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
           F           +   ERL +     N  +   A++ + +GC++ C+FC++P  RG    
Sbjct: 117 FPDLSPPKREFNDSLLERLKLSSEIENYSKPY-AYVKVSDGCNRGCSFCIIPSFRGKFRE 175

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
             +  ++ +  + I  G  EI L+ Q+   +   G + E     D++  ++EI  L  LR
Sbjct: 176 SPVEDILRDVDRAIRAGAKEICLVSQDTVYY---GRNSE--VLLDMVRKVAEIDSLEVLR 230

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
               +P   ++ L++  G+   + PYL  P+Q  S +ILKSMNR   +  ++ +    R 
Sbjct: 231 LLYLYPDKKTEKLLRLMGETPKIAPYLESPLQHVSSKILKSMNRVGESSTFKDLFALARE 290

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           V+P + I + FI+G+PGE   D    +  +++    +   F YSP+ GT G+ + + V E
Sbjct: 291 VKPGLEIRTSFIIGYPGEEPGDVDQVLRFIEETRPEKVNLFSYSPQEGTKGAELKQTVSE 350

Query: 385 NVKAERL 391
             K+ R+
Sbjct: 351 KEKSRRI 357


>gi|228469810|ref|ZP_04054768.1| conserved hypothetical protein [Porphyromonas uenonis 60-3]
 gi|228308649|gb|EEK17400.1| conserved hypothetical protein [Porphyromonas uenonis 60-3]
          Length = 449

 Score =  148 bits (374), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 108/413 (26%), Positives = 195/413 (47%), Gaps = 26/413 (6%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDD------ADLIVLNTCHIREK 75
           +V +R    + GC++N  ++  +     + G ER++           D+ ++N+C + + 
Sbjct: 9   LVGKRAAFYTLGCRLNYAETSTIARQLATVGVERISDEHHHTTEVLPDICIVNSCSVTDT 68

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135
           A +K  S + R+        +E  + L+VV GC AQ +GE+I +  P V++VVG      
Sbjct: 69  ADKKCRSLINRLH-------REYPEALIVVTGCYAQLQGEQIAQ-MPGVDLVVGSGRKSE 120

Query: 136 LPELLE---RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTF 192
           +  LL    + R   +      +   + +         +R R    FL +Q+GC+ +CT+
Sbjct: 121 IVALLTELCQKRTQPKAATPHVTARRELQHFEPSVSSDDRTRH---FLKVQDGCNYYCTY 177

Query: 193 CVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLY 252
           C +P  RG+  + S++ +V +A ++ + G  EI L G N+  + G+   GE  T  +LL+
Sbjct: 178 CTIPAARGVSRNGSIASLVAQAERVAELGGREIILTGVNIGDF-GRS-TGE--TLLELLH 233

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
            L+++ G+ R R  +  P  ++  +I+   +    MP+ H+P+QSGSD +L+ M R +  
Sbjct: 234 RLTQVAGIARYRIGSIEPELLTPEIIQFVAETAQFMPHFHIPLQSGSDHVLRLMRRHYDT 293

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
             + + +  I  + PD  +  D I G  GE  +    T+  +    ++Q   F YS R G
Sbjct: 294 ELFAERLKLIYELIPDAFVGIDVIAGMRGELPEHHAETLAFLKTQPWSQLHVFPYSERKG 353

Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE--KHGK 423
           T    +   V    K  R   L     E+  +F     G +  VL E  +HG+
Sbjct: 354 TKALEIKPAVPATEKKLRTKELLALSSERHNAFCAPFAGSVRPVLWEETRHGE 406


>gi|325473662|gb|EGC76851.1| MiaB-like tRNA modifying enzyme [Treponema denticola F0402]
          Length = 468

 Score =  148 bits (374), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 117/452 (25%), Positives = 207/452 (45%), Gaps = 46/452 (10%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGY-----ERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           +++ GC++N  +S  +   F   G+     E   S+    L ++NTC +  KA +K    
Sbjct: 9   IETLGCRLNQVESEALAVRFAECGFDVFSKEAETSILPVKLCIVNTCTVTGKAEQKA--- 65

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT--YYRLPELLE 141
               R L    +KE  + +++V GC A+ E + I + +  +    G +      LP+ L+
Sbjct: 66  ----RRLIRLLLKEHEESVILVTGCYAELEADSIEKINKRIIAFSGKKKDELDGLPQFLK 121

Query: 142 RARFGKRVVDTD---------------YSVEDKFERLSIVDGGYNRKRGVT--------- 177
            +    + +  D               YS ED+ ++  ++     RK             
Sbjct: 122 DSCLKNKDLKEDTVNLKKNLLIFRNKIYSKEDRLDKSFLLKETERRKSMFKLSSPVFVFH 181

Query: 178 --AFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW 235
             A L IQ+GC+  C +C +   RG  +S    + V    ++  NG  E+ L G N++ +
Sbjct: 182 SRASLKIQDGCNNACAYCRIRLARGTSVSLPAEEAVRRIVQIEKNGAAEVVLSGVNLSQY 241

Query: 236 RGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPV 295
           R +   G    F++LL  L E    +RLR ++ +P  + D +++   +  +  P+ HL +
Sbjct: 242 RDETYGG----FANLLAKLLENTKKIRLRISSMYPECVDDGILEIVANKRI-CPHFHLSI 296

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
           QSGSD+ILK+MNR +   + R+ I+ +R  + +  I  D I GFP ET+DDF  T  + +
Sbjct: 297 QSGSDKILKAMNRPYREADIRRAINNLRKAKDNPFIGCDIITGFPSETEDDFLQTFKMCE 356

Query: 356 KIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIE 415
           ++       F +S R GT   +M  +V E     R   L +   +   S+  +C G++  
Sbjct: 357 ELKIPGIHVFPFSARPGTRAFSMRPKVPEREAGRRASLLSELSGKNYQSYLASCNGKLFF 416

Query: 416 VLIEK-HGKEKGKLVGRSPWLQSVVLNSKNHN 446
            +IEK    E  ++V  +     +V+N K  N
Sbjct: 417 GVIEKPQNNEDLRIVTENYLSLPLVVNKKAEN 448


>gi|160942971|ref|ZP_02090209.1| hypothetical protein FAEPRAM212_00448 [Faecalibacterium prausnitzii
           M21/2]
 gi|158445665|gb|EDP22668.1| hypothetical protein FAEPRAM212_00448 [Faecalibacterium prausnitzii
           M21/2]
          Length = 431

 Score =  148 bits (374), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 113/431 (26%), Positives = 212/431 (49%), Gaps = 25/431 (5%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N+ ++  +E +F + G+      + AD+ ++N+C +     +K   +L R +  
Sbjct: 7   TLGCKVNLNETGALEQLFRANGFTIAQEGEAADVFIVNSCTVTNFGDQKSRKWLRRKK-- 64

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG-KRV 149
                +E    + V+ GC  QA  EE  +     ++V G      + E +++   G +R+
Sbjct: 65  -----RENPGAVTVLTGCYPQAFPEEAAQFME-ADLVCGNGDRKAILENVQKLLDGHERI 118

Query: 150 VD-TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           V    +   ++FE L +     + +    AF+ +++GC++ C +CV+P  RG   SR+  
Sbjct: 119 VAIAPHQRGEQFEELPVERFETHTR----AFIKVEDGCNRQCAYCVIPRARGPVRSRAEE 174

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
            ++ E  +L   G  E+ L   ++ ++   GLD       +L+   +++ G+ R+R  + 
Sbjct: 175 SILAELHQLAAAGYREVVLSAISLPSY---GLD-TGTNLVELVEKCAQVPGIERIRLGSL 230

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV--- 325
            P  ++   I     +D L P  HL +QSG    L+ M R +TA +Y Q++++IR+    
Sbjct: 231 DPDMLTPEFISRLAAVDKLCPQFHLSLQSGCTATLRRMRRVYTAQQYAQVVEQIRAAYGS 290

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
           RP ++ ++D I GFPGET ++F  +   + KIG+ +   F YS R GTP  +  +Q+ E 
Sbjct: 291 RP-VSFTTDCICGFPGETAENFEESCAFLKKIGFLKVHVFPYSRRSGTPAYDFPDQIHER 349

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL-VGRSPWLQSVVLNSKN 444
            K ER   +     + +     A  G   EVL+E      G L  G +     VV+++  
Sbjct: 350 EKQERSRRMNAVAEQVRCEALAAFEGTEDEVLLET--PLSGTLFTGYTRLYIPVVVSAPG 407

Query: 445 HNIGDIIKVRI 455
              G I++V++
Sbjct: 408 CESGQIVRVKL 418


>gi|312796118|ref|YP_004029040.1| tRNA 2-methylthioadenosine synthase homolog [Burkholderia
           rhizoxinica HKI 454]
 gi|312167893|emb|CBW74896.1| tRNA 2-methylthioadenosine synthase homolog [Burkholderia
           rhizoxinica HKI 454]
          Length = 478

 Score =  148 bits (374), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 129/477 (27%), Positives = 219/477 (45%), Gaps = 74/477 (15%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC   + DS ++     ++GY+   + D ADL+V+NTC   ++A ++    +G     
Sbjct: 36  SLGCPKALVDSEQIITQLRAEGYQICGTYDGADLVVVNTCGFIDEAVQESLDAIGEA--- 92

Query: 91  KNSRIKEGGDLLVVVAGCVA---QAEGEEILRR-SPIVNVVVGPQTYYRLPELLE--RAR 144
               + E G   V+V GC+     A G  ++ +  P V  V GP     L E+++   A 
Sbjct: 93  ----LAENGK--VIVTGCLGAKKNASGTGLIEQVHPKVLAVTGPHA---LGEVMQAVHAH 143

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
             K          D F  L +   G        A+L I EGC+  CTFC++P  RG  +S
Sbjct: 144 LPKP--------HDPFVDL-VPAAGIKLTPKHYAYLKISEGCNHRCTFCIIPSMRGDLVS 194

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGE-KCTFSDLLY 252
           R +++V+ EA  L  +GV E+ ++ Q+ +A           W G+ L        + L  
Sbjct: 195 RPVAEVMLEAENLFKSGVKELLVISQDTSAYGVDVKFRTGFWNGRPLRTRMNELAAALGE 254

Query: 253 SLSEIKGLVRLRYTTSHPRD------MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306
             ++    VRL Y   +P        M+D   + H     L+PYL +P+Q     +L+ M
Sbjct: 255 LAAQYGAWVRLHYVYPYPSVDEIVPLMADGPYRGH-----LLPYLDVPLQHADPEVLRRM 309

Query: 307 NRRHTAYEYRQIIDRIRSVR---PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
            R   A    + ++R+R+ R   PD+ I S FIVGFPGET+  F   +D + +    +  
Sbjct: 310 KRPANA---EKTLERVRAWREACPDLTIRSTFIVGFPGETEAQFEVLLDFIREAQLDRVG 366

Query: 364 SFKYSPRLGTPGSNMLEQVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
            F YSP  G   + +   + ++V+     R + + + +  +++      VG+ ++VLI++
Sbjct: 367 CFAYSPVEGASANELDGTLPDDVREARRARFMAVAESVSAERLKRK---VGKTLKVLIDE 423

Query: 421 HGKEKGKLVGRS----PWLQSVVL------NSKNHNIGDIIKVRITDVKISTLYGEL 467
              + G  +GRS    P +  VV        S+ + +GD + V IT      L+G++
Sbjct: 424 VNADGG--IGRSAADAPEIDGVVYVSPASKASRRYKVGDFVNVSITGADGHDLWGDV 478


>gi|225181946|ref|ZP_03735380.1| MiaB-like tRNA modifying enzyme YliG [Dethiobacter alkaliphilus AHT
           1]
 gi|225167386|gb|EEG76203.1| MiaB-like tRNA modifying enzyme YliG [Dethiobacter alkaliphilus AHT
           1]
          Length = 440

 Score =  148 bits (374), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 129/449 (28%), Positives = 214/449 (47%), Gaps = 40/449 (8%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +  V S GC  N+ DS  M  +    G+      + A +I++NTC   + A E+  +   
Sbjct: 5   KVAVVSLGCAKNLVDSETMLGLLNEDGFTLTTDPEKAHVIIINTCGFIDAAKEESIA--- 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
             + L+ +  KE    L++ AGC+AQ   +E+L   P V+ + G    +     + R   
Sbjct: 62  --KILEMAAYKEKNCRLLLAAGCMAQRFADELLDELPEVDGLFGTNDVHGAAVAIRRGLA 119

Query: 146 GKRVVDT--DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           G++V  T  +++  D   RL             TA+L I EGCD  CT+C +P  RG   
Sbjct: 120 GEKVSFTQGEFAGSDDAPRLLSTPSH-------TAYLKIAEGCDNRCTYCAIPAIRGPYQ 172

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR    VV EA+ L   GV E+ L+ Q++  + G    G K     LL  L+ I G+  +
Sbjct: 173 SRDGQAVVSEAQSLAAGGVKELNLIAQDITLY-GTDRTG-KAQLPKLLGELAAIDGVHWI 230

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R   ++P  +   +I+A    + +  YL LP+Q GSD+IL+ M R+ TA +  ++I+ +R
Sbjct: 231 RLLYAYPERLDQRIIEAVAREEKVCKYLDLPLQHGSDKILRRMGRKTTADKILKLIETLR 290

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDL-----VDKIGYAQAFSFKYSPRLGTPGSNM 378
              P I + S FI GFPGE +++F   +       +D++G+     F YS   GTP +  
Sbjct: 291 REVPGIVLRSSFIAGFPGEGEEEFGEMLAFLKEAQLDRVGF-----FAYSREEGTPAAAY 345

Query: 379 LEQVDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWL 435
             QV   VK ER+   + LQ  + E++       VG+ +  +++    +   ++    ++
Sbjct: 346 SNQVPAEVKEERVRRAVALQSAISEKK---QQQLVGKTVTAMVDGSSAQDPSILLARSYM 402

Query: 436 QSV-------VLNS-KNHNIGDIIKVRIT 456
           Q+        + NS K    G ++ V IT
Sbjct: 403 QAPEVDGYIRIQNSDKKAQKGGLLPVTIT 431


>gi|32266379|ref|NP_860411.1| hypothetical protein HH0880 [Helicobacter hepaticus ATCC 51449]
 gi|32262429|gb|AAP77477.1| conserved hypothetical protein [Helicobacter hepaticus ATCC 51449]
          Length = 423

 Score =  148 bits (374), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 114/446 (25%), Positives = 205/446 (45%), Gaps = 30/446 (6%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ + K++GC+ N++D+  M+     + +E   + ++AD++V+N+C +   A   V  +L
Sbjct: 5   KKVYFKTFGCRTNLFDTQVMKSNL--KHFECARNENEADVVVVNSCTVTNGADSGVRGYL 62

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            ++R L            V   GC     GEEI   + +V+ V       R+ E L    
Sbjct: 63  NKMRELNKK---------VYFTGCGVGTRGEEIFTHN-LVHSVFAHSFKERIDEFLTT-- 110

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
             +R   T+ + E     +     G +R     AFL IQEGCD  C++C++P+ RG   S
Sbjct: 111 -NQRFFHTESAPEHIDSTIVTHFSGKSR-----AFLKIQEGCDFACSYCIIPFVRGKARS 164

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
                ++++ R L  NG  E+ L G NV ++   G D +    + L+  +  +  L RLR
Sbjct: 165 YPQKSILEQIRALAQNGKTEVVLTGTNVGSY---GKDLKDYNLARLIKDIYSLGVLKRLR 221

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
             +  P  + D  +K   +L  +  +LH+ +Q  S+ +L  MNR +      ++   +  
Sbjct: 222 VGSLEPSQI-DSELKESLELPFMEKHLHIALQHTSNTMLSLMNRYNRVESDLELF--MYF 278

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
            +    + SDFIVG PGE++  ++  ++            F YS R GTP S + ++V  
Sbjct: 279 AKKGFCLGSDFIVGHPGESEAVWQEALENFKSFPLTHLHPFVYSKRDGTPSSTIKDEVKG 338

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV--GRSPWLQSVVLNS 442
           N+  ERL  L++ +     +F  A     ++VL E   +     +  G   +   +   S
Sbjct: 339 NIAKERLHTLKEIVVNNNEAFRKAH-NMPLDVLCESRRESDTAFIYTGLDQFFNPMQFES 397

Query: 443 KN-HNIGDIIKVRITDVKISTLYGEL 467
            N H  G  +K++   ++    YGE+
Sbjct: 398 SNPHLEGQWVKIKTYSIEKERNYGEV 423


>gi|85707593|ref|ZP_01038659.1| hypothetical protein NAP1_00120 [Erythrobacter sp. NAP1]
 gi|85689127|gb|EAQ29130.1| hypothetical protein NAP1_00120 [Erythrobacter sp. NAP1]
          Length = 456

 Score =  148 bits (374), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 125/470 (26%), Positives = 205/470 (43%), Gaps = 52/470 (11%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +R  + S GC   + DS R+     + GY        AD++++NTC   + A E+  + +
Sbjct: 5   KRVGMVSLGCPKALVDSERILTRLRADGYAMSADYAGADVVLVNTCGFLDSAKEESLAAI 64

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           G         I E G   V+V GC+   E E I    P V  V G   Y ++ E +    
Sbjct: 65  GEA-------IAENG--RVIVTGCMGD-EAEAIRAAHPQVLAVTGAHQYEQVVEAVHEHA 114

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
              +    D   +     + +    Y+       +L I EGC+  C FC++P  RG   S
Sbjct: 115 PPSQGPYIDLIPQPD---VKLTPRHYS-------YLKISEGCNHSCAFCIIPQLRGKLAS 164

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAW------------RGKGLDGEKCTFSDLLY 252
           R +  V+ EA KL+  G  E+ ++ Q+ +A+             G+     +   +DL  
Sbjct: 165 RRIDAVLREAEKLVAAGTKELLVISQDTSAYGVDTRHEARPWPMGQDTREVRAHMTDLAR 224

Query: 253 SLSEIK------GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306
            L +++         RL Y   +P       + A G   +L PYL +P Q  S  +LK+M
Sbjct: 225 ELGQLRTAEGKAPWTRLHYVYPYPHVDKVIPLMAEG---LLTPYLDIPFQHASPNVLKAM 281

Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
            R     +  + +   R + P+IA+ S F+VGFPGET+DDF+  +D +++    +  +F+
Sbjct: 282 KRPANEAKVLERLKGWREICPEIAVRSSFVVGFPGETEDDFKYLIDWLEEAQLDRVGAFR 341

Query: 367 YSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK--E 424
           + P  G   +++   V E VK ER   L +       +   A VG+ + V+I+  G+  E
Sbjct: 342 FEPVEGAAANDLPNPVPEEVKEERYARLMEVTERISAAKLAAKVGKTLPVIIDDVGEPDE 401

Query: 425 KGKL--VGRS----PWLQSVVL---NSKNHNIGDIIKVRITDVKISTLYG 465
            G +   GRS    P +   V      +    G I+ V + D     LYG
Sbjct: 402 DGDIGATGRSQADAPEIDGAVYLRNVPETLEPGAIVDVEVEDADAHDLYG 451


>gi|20094517|ref|NP_614364.1| 2-methylthioadenine synthetase [Methanopyrus kandleri AV19]
 gi|19887629|gb|AAM02294.1| 2-methylthioadenine synthetase [Methanopyrus kandleri AV19]
          Length = 423

 Score =  148 bits (373), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 124/452 (27%), Positives = 203/452 (44%), Gaps = 47/452 (10%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V+ YGC  N  D   + ++   +G+E V   ++AD+ VL TC +R+    ++   + R+R
Sbjct: 6   VEVYGCAANHDDGRLVRELLRREGFEVVEDAENADVAVLLTCIVRDSVDARM---VNRMR 62

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
            L+         +  VVAGC  +A  E   +  P    +VGP+   R+PE +     G R
Sbjct: 63  ELER--------VPTVVAGCFPEAYPERARKLRPDA-ALVGPRHLDRIPEAVRAVLRGDR 113

Query: 149 VV------DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           V       D D+  +   E  ++            A + I EGC   C +C V   RG  
Sbjct: 114 VEFLGEREDIDWKADAPRELPNL-----------AAIVPIAEGCPNRCAYCAVKLARGNL 162

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCT--FSDLLYSLSEIKG 259
            S    +++   ++ ++ G  EI L  Q+   +   GLD G        D++   S    
Sbjct: 163 RSFPPERILRRVKRELERGAVEIHLTAQDTATY---GLDRGTNVVELLEDVVDLCSRYGA 219

Query: 260 LVRL-RYTTSHPRDMSDCLIKAHGDLD-VLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
            VRL  +   H   +SD L       D VL   +H+PVQSG D +L+ MNR +T  E  +
Sbjct: 220 RVRLGMFNPGHAYPISDDLADLFASRDDVLYRSIHMPVQSGDDEVLRRMNRNYTVEEALE 279

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
           +           +  +D IVGFPGET++ FR T+  +++       + ++  R GTP + 
Sbjct: 280 VYRAFERRLGYFSFITDVIVGFPGETEEAFRNTLRFLERTRPHILHASRFCRRPGTPAAR 339

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEV--LIEKHGKEKGKLVGRSPWL 435
           M +QV E+VK  R   L +K  E     N   +G+ +EV  ++EK G+++          
Sbjct: 340 MEDQVPEDVKLRRSRILHRKRLEWAEEANRELIGETVEVTMVMEKWGRDEHA-------- 391

Query: 436 QSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
           +  V   +    G+ ++ RI D   + L  E+
Sbjct: 392 KKTVFRGEVPEPGERLECRIVDASHARLVAEV 423


>gi|242021866|ref|XP_002431364.1| radical sam protein, putative [Pediculus humanus corporis]
 gi|212516632|gb|EEB18626.1| radical sam protein, putative [Pediculus humanus corporis]
          Length = 442

 Score =  148 bits (373), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 105/378 (27%), Positives = 178/378 (47%), Gaps = 42/378 (11%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
            + ++K++GC  N  DS  M  +  S GY  V   + ADL +LN+C ++  A     + +
Sbjct: 55  HKIYIKTWGCTHNSSDSEYMAGLLSSYGYNLVEDPEIADLWLLNSCTVKNPAESHFRNEI 114

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNV-VVGPQTYYRLPELLERA 143
            + R L            +V AGCV Q       +++ I N+ ++G     R+ E++E  
Sbjct: 115 EKGRKLGKH---------IVAAGCVPQGAP----KQNYIQNLSIIGIHNIDRVVEVVEET 161

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYN------RKRGVTAFLTIQEGCDKFCTFCVVPY 197
             G  V       E+  ++L    GG N      RK      + I  GC   CT+C   +
Sbjct: 162 LKGHSVRLLSQKKENG-KKL----GGANLLLPKVRKNPYIEIIPISTGCLNQCTYCKTKH 216

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257
            RG   S  + ++V+ A++    GV E+ L  ++  A+ GK +     +  +LL+ + E+
Sbjct: 217 ARGELGSYPVEEIVERAKQAFSEGVVELWLTSEDTGAY-GKDIGA---SLPELLWKVVEV 272

Query: 258 --------KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
                    G+    Y   H  +M+  L     + + +  +LH+PVQSGSD +L  M R 
Sbjct: 273 IPDNCRMRVGMTNPPYILEHLEEMAKIL-----NHEKVYSFLHVPVQSGSDAVLSDMKRE 327

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369
           +T  +++ ++D +R   P I I++D I GFP ET+ DF  T+ L +   +   F  ++ P
Sbjct: 328 YTISDFKHVVDFLRLRVPGITIATDIICGFPTETEKDFEETLSLCETYKFPSLFINQFYP 387

Query: 370 RLGTPGSNMLEQVDENVK 387
           R GTP + M++     VK
Sbjct: 388 RPGTPAAKMVKVPMHEVK 405


>gi|332877549|ref|ZP_08445296.1| tRNA methylthiotransferase YqeV [Capnocytophaga sp. oral taxon 329
           str. F0087]
 gi|332684655|gb|EGJ57505.1| tRNA methylthiotransferase YqeV [Capnocytophaga sp. oral taxon 329
           str. F0087]
          Length = 447

 Score =  148 bits (373), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 127/441 (28%), Positives = 217/441 (49%), Gaps = 36/441 (8%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N  ++  +  +    G   V + + AD+ V+NTC + E A  K        R  
Sbjct: 16  TLGCKLNFAETSTIGRLLKEMGVRTVRAGERADICVVNTCSVTEVADHKC-------RQA 68

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPI--VNVVVGPQTY--------YRLPELL 140
            +  +++     VVV GC AQ + E++   S I  V++V+G +           RLP LL
Sbjct: 69  IHKLVRQHPGAFVVVTGCYAQLKPEQV---SAIDGVDLVLGAEQKGDILRYLEERLP-LL 124

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGY-NRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
              R         Y+V  K     +      +R R    FL +Q+GCD +CT+C +PY R
Sbjct: 125 PAERKLADAEHEAYTVPTKDIHTFVPSCSCGDRTR---YFLKVQDGCDYYCTYCTIPYAR 181

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G   + S++ +V +A +    G  EI L G N+  + GK   GE  +F DL+ +L  ++G
Sbjct: 182 GRSRNGSIASLVRQAEQAASEGGREIVLTGVNIGDF-GK-TTGE--SFLDLVKALDRVEG 237

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           + R R ++  P  +++ ++    +    MP+ H+P+QSGSD +LK M RR+T   + + I
Sbjct: 238 IARYRISSIEPNLLTEEVLAYCAESRAFMPHFHIPLQSGSDEVLKLMRRRYTTNFFAEKI 297

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            R++ + PD  +  D IVG  GET++ F    + +  +  +Q   F YS R GT    + 
Sbjct: 298 SRVKELMPDAFVGVDVIVGTRGETEECFEEAFEFIRSLDVSQLHVFSYSERPGTMALKIE 357

Query: 380 EQV---DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQ 436
             V   +++ +++RLL L     E   +F    +G   EVL+E+  + +G + G +    
Sbjct: 358 HSVSPEEKHRRSQRLLELSDAKWE---AFYRRYIGTEAEVLLER-SRTEGVMHGFTANYI 413

Query: 437 SVVLNSKNHNIGDIIKVRITD 457
            V L  + +    I++VR+ D
Sbjct: 414 RVELPVEGNLDNQIVRVRLGD 434


>gi|56695846|ref|YP_166197.1| ribosomal protein S12 methylthiotransferase [Ruegeria pomeroyi
           DSS-3]
 gi|81350443|sp|Q5LUV8|RIMO_SILPO RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|56677583|gb|AAV94249.1| RNA modification enzyme, MiaB-family [Ruegeria pomeroyi DSS-3]
          Length = 466

 Score =  148 bits (373), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 129/455 (28%), Positives = 204/455 (44%), Gaps = 44/455 (9%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC   + DS R+     ++GY        AD +++NTC   + A  +    +G     
Sbjct: 37  SLGCPKALVDSERILTRLRAEGYGISPDYAGADAVIVNTCGFLDSAKAESLDAIGEA--- 93

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               +KE G   V+V GC+  AE + I    P +  V GP  Y ++ + +  A      V
Sbjct: 94  ----LKENGK--VIVTGCLG-AEPDYIREHHPRILAVTGPHQYEQVLDAVHGA------V 140

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
             D    D F  L    G     R  + +L I EGC+  C FC++P  RG   SR    V
Sbjct: 141 PPD---PDPFVDLLPASGVQLTPRHYS-YLKISEGCNHKCKFCIIPDMRGKLASRPAHAV 196

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE-----------KCTFSDLLYSLSEIKG 259
           + EA KL+DNGV E+ ++ Q+ +A+   GLD +           +   +DL   L ++  
Sbjct: 197 LREAEKLVDNGVKELLIISQDTSAY---GLDRKYDTNLWKNREVRSHITDLARELGQLDA 253

Query: 260 LVRLRYTTSHP--RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
            VRL Y   +P  R++   +  A  +L   +PYL +P Q      LK M R   A     
Sbjct: 254 WVRLHYVYPYPHVRELIPLMADAGCNL---LPYLDIPFQHAHPDTLKRMARPAAAARTLD 310

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
            I   R + P+I + S FIVG+PGET+ +F+  +D +D+    +   F+Y    G   ++
Sbjct: 311 EIAAWREICPEITLRSTFIVGYPGETEAEFQTLLDWMDEAQLDRVGCFQYENVAGARSND 370

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS--PWL 435
           + + V   VK ER      K +    +   A VGQ+IEV++++   E      +S  P +
Sbjct: 371 LPDHVPAEVKQERWDRFMAKAQAISEAKLAARVGQVIEVIVDEVDDEAATCRTKSDAPEI 430

Query: 436 QSVVLNSKNH---NIGDIIKVRITDVKISTLYGEL 467
              +   +       GDI+ V + +     L+G L
Sbjct: 431 DGNLFIDEGFEGLQPGDIVTVEVDEAGEYDLWGRL 465


>gi|294673495|ref|YP_003574111.1| 30S ribosomal protein S12 methylthiotransferase RimO [Prevotella
           ruminicola 23]
 gi|294473743|gb|ADE83132.1| ribosomal protein S12 methylthiotransferase RimO [Prevotella
           ruminicola 23]
          Length = 437

 Score =  148 bits (373), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 120/454 (26%), Positives = 207/454 (45%), Gaps = 45/454 (9%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDD--ADLIVLNTC-HIREKAAEKVYSFLGRI 87
           S GC  N+ DS  +  +  + GY+  +  DD   +++V+NTC  I +   E + + L   
Sbjct: 9   SLGCSKNLVDSETLMGLMEANGYQCTHDSDDPQGEIVVVNTCGFINDAKEESINTILEFA 68

Query: 88  RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF-- 145
           +     RI++     + V GC+++    ++ +  P V+   G   Y +L + L    +  
Sbjct: 69  QAKTEGRIEK-----LFVMGCLSERYLADLEKEIPEVDGWYGKFNYKKLLKDLNGEEYNA 123

Query: 146 --GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             GKR + T                         A++ I EGCD+ C +C +P   G   
Sbjct: 124 CEGKRHITTPRHY---------------------AYIKISEGCDRHCAYCAIPLITGKHQ 162

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR + +++DE R L+  G  E  ++ Q +  + G  LDG K   ++L+  +++I G+  +
Sbjct: 163 SRPMQEILDEVRYLVSQGTKEFNVIAQELTYY-GVDLDG-KQHIAELIEQMADIPGVEWI 220

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R   ++P      L++   +   +  YL + +Q  SD +L  M R  T  E  +++ R+R
Sbjct: 221 RLHYAYPTHFPWDLLRVIREKQNVCKYLDIALQHVSDNMLSRMRRHVTKDETYELVRRMR 280

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT-PGSNMLEQV 382
              P I I +  +VGFPGETD+DF      V    + +  +F YS   GT    N  + V
Sbjct: 281 EEVPGIHIRTTLMVGFPGETDEDFEELKAFVKWARFERMGAFSYSEEEGTYSADNFEDDV 340

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSV 438
            E+VK  RL  + +  +          VG++ +V+I++  +E    +GR    SP +   
Sbjct: 341 PEDVKQSRLDKIMRIQQNISAELEAEKVGKVFKVIIDR--REGDYYIGRTEFCSPEVDPE 398

Query: 439 VL---NSKNHNIGDIIKVRITDVKISTLYGELVV 469
           VL         IG+   V ITD +   LYG  ++
Sbjct: 399 VLIPAAEAKLTIGNFYDVLITDSEEFDLYGTTII 432


>gi|297202795|ref|ZP_06920192.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Streptomyces sviceus ATCC
           29083]
 gi|197713883|gb|EDY57917.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Streptomyces sviceus ATCC
           29083]
          Length = 498

 Score =  148 bits (373), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 131/490 (26%), Positives = 214/490 (43%), Gaps = 52/490 (10%)

Query: 23  VPQRFFVK--SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKV 80
           +P+R  V   + GC  N  DS  +     + G++ V    +AD+ V+NTC   E A +  
Sbjct: 1   MPERRTVALVTLGCARNEVDSEELAGRLEADGWDLVEDAAEADVAVVNTCGFVEAAKKDS 60

Query: 81  YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140
              L    +LK      G    VV  GC+A+  G+++    P  + V+G   Y  + + L
Sbjct: 61  VDALLEANDLKG----HGRTQAVVAVGCMAERYGKDLAEALPEADGVLGFDDYADISDRL 116

Query: 141 E-------------RAR----------------------FGKRVVDTDYSVEDKFERLSI 165
           +             R R                       G      + +  D  E L+ 
Sbjct: 117 QTILSGGIHAAHTPRDRRKLLPISPAQRQESAASVALPGHGPAAETPEAAPADLPEGLAP 176

Query: 166 VDGGYN--RKR---GVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN 220
             G     R+R      A + +  GCD+ C+FC +P  RG  ISR  S V++E R L + 
Sbjct: 177 ASGPRAPLRRRLDGSPVASVKLASGCDRRCSFCAIPSFRGSFISRRPSDVLNETRWLAEQ 236

Query: 221 GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKA 280
           GV EI L+ +N N   GK L G+      LL  L+E+ GL R+R +   P +M   LI  
Sbjct: 237 GVKEIMLVSEN-NTSYGKDL-GDIRLLESLLPELAEVDGLERVRVSYLQPAEMRPGLIDV 294

Query: 281 HGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFP 340
                 ++PY  L  Q  +  +L++M R      + +++D IR   P+  + S+FIVGFP
Sbjct: 295 LTSTPKVVPYFDLSFQHSAPGVLRAMRRFGDTDRFLELLDTIRGKAPEAGVRSNFIVGFP 354

Query: 341 GETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLRE 400
           GET+ D       ++         F YS   GT  +    ++DE+V AERL  + +   E
Sbjct: 355 GETEADLAELERFLNGARLDAIGVFGYSDEEGTEAATYENKLDEDVVAERLAHVSRLAEE 414

Query: 401 QQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPWLQSVVL--NSKNHNIGDIIKVRIT 456
                 +  VG+ ++VL+E   +E   G+   ++P     VL  + +  ++G +++ ++ 
Sbjct: 415 LVSQRAEERVGETVQVLVESVDEEGVYGRGAHQAPETDGQVLLTSGEGLSVGRMVEAKVV 474

Query: 457 DVKISTLYGE 466
             +   L  E
Sbjct: 475 GTEGVDLVAE 484


>gi|31789378|gb|AAP58495.1| conserved hypothetical protein [uncultured Acidobacteria bacterium]
          Length = 414

 Score =  148 bits (373), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 116/381 (30%), Positives = 180/381 (47%), Gaps = 34/381 (8%)

Query: 36  MNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRI 95
           MN  DSLR+E+   ++G     +   ADL+V+NTC +   A +     + RI        
Sbjct: 1   MNQADSLRIEEGLRARGGLDAPA-SGADLVVVNTCSVTAAADQGARQTIRRI-------A 52

Query: 96  KEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA--RFGKRVVDTD 153
           ++   + VVV GC A     ++     +V V+        + +    A  R      D D
Sbjct: 53  RDNPGVRVVVTGCYATRCESDVAALPNVVRVIRNDAKDGLVDDAFAEAGLRAAPHAQDGD 112

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAF-LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVD 212
                     +IV G   R    TAF L +Q GC++ C +C++P TRG   S ++  VV 
Sbjct: 113 GPCGS-----AIVPGLAGR----TAFTLRVQTGCEEACAYCIIPTTRGAGRSVAIGDVVR 163

Query: 213 EARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
           E  ++  +G  EI L G ++ ++ G+ L+  + +  DLL +L      V  R ++  P D
Sbjct: 164 EVERIAASGFKEIALTGVHLGSF-GRDLESRR-SLIDLLRALDGCAADVVFRISSLEPMD 221

Query: 273 MSDC---LIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329
            +     L+ + G      P+ HLP+Q  S+R+L  M R +T  EYR ++D + +  P  
Sbjct: 222 CTKAIVDLVASSGGR--FAPHFHLPLQHASNRMLALMRRPYTLGEYRGLVDGLAARLPHA 279

Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAE 389
           +I SD IVGFPGE+DDDFRA +D +          F YS R GT  + M  +V+     E
Sbjct: 280 SIGSDLIVGFPGESDDDFRANLDYLPASPLTHLHVFPYSDRPGTAATGMGGKVEGMTIRE 339

Query: 390 RLL-------CLQKKLREQQV 403
           R L        L ++ R+ QV
Sbjct: 340 RGLRMREIGAALARRFRQSQV 360


>gi|328948729|ref|YP_004366066.1| RNA modification enzyme, MiaB family [Treponema succinifaciens DSM
           2489]
 gi|328449053|gb|AEB14769.1| RNA modification enzyme, MiaB family [Treponema succinifaciens DSM
           2489]
          Length = 482

 Score =  148 bits (373), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 108/423 (25%), Positives = 187/423 (44%), Gaps = 42/423 (9%)

Query: 30  KSYGCQMNVYDSLRMEDMFFSQGY--------ERVNSMDDADLIVLNTCHIREKAAEKVY 81
           ++ GC++N  ++      F   G+           N   D  L V+NTC +  KA +K  
Sbjct: 8   ETLGCRLNQDETEGAARSFSDAGFICEFNSISSAKNPSQDVILSVINTCTVTGKAEQKA- 66

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVV------------- 128
                 R +    +++  +  ++V GC A+    EI   S    V+V             
Sbjct: 67  ------RRIIRLLLEKFFNAPLIVTGCYAELADSEITSISKNRIVIVPGTKKFVLKEIAV 120

Query: 129 -----------GPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT 177
                      G   +  L   + +  F    +D+   +       ++    + +    T
Sbjct: 121 AMNGGDLDFKSGKFNFENLKSFVSKKIFSFERIDSAKKIPMAINPFALYTPVFEKHSRAT 180

Query: 178 AFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG 237
             L IQ+GC+  C+FC + + RG  +S    ++++ A+++ + G  EI L G N++ + G
Sbjct: 181 --LKIQDGCNNSCSFCRIHFARGTSVSLEPEKILERAKEIENLGSSEIVLTGVNLSQYAG 238

Query: 238 KGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQS 297
              DG    F DLL  L      V+ R ++ +P+ ++  L     D  V  P+ HL +QS
Sbjct: 239 MSKDGAIFDFKDLLSFLLSNTKKVKFRISSFYPQHITKELCAVLSDKRV-QPFFHLSIQS 297

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
           GSD IL SM R +   +    +  +R  + +  IS D I GFPGET+DDF  T  L  K+
Sbjct: 298 GSDSILNSMRRPYKREQVENAVQLLRECKMNPFISCDIIAGFPGETEDDFEQTKSLCKKM 357

Query: 358 GYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVL 417
            +A   +F +S R GT   +M  ++ E  K ER+  L +     ++S+ ++   + +E  
Sbjct: 358 NFAWIHAFPFSARPGTLAFSMTPKIPERTKNERVKWLAEIAVSGKISYINSFKEKTVEAT 417

Query: 418 IEK 420
           +EK
Sbjct: 418 VEK 420


>gi|298675805|ref|YP_003727555.1| MiaB-like tRNA modifying enzyme [Methanohalobium evestigatum
           Z-7303]
 gi|298288793|gb|ADI74759.1| MiaB-like tRNA modifying enzyme [Methanohalobium evestigatum
           Z-7303]
          Length = 433

 Score =  147 bits (372), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 124/450 (27%), Positives = 213/450 (47%), Gaps = 26/450 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +  V +YGC  +   S  M D    QG+E V+    AD++V NTC ++    +K+   +G
Sbjct: 2   KVHVATYGCPSSQAASEIMMDAIKRQGHELVDE-KSADVVVFNTCTVKYTTEQKILHKIG 60

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +        ++G  L VVV+GC+ + + ++IL  +   +++ G  +  R+ E+L+    
Sbjct: 61  ELG-------RKG--LEVVVSGCMPEVQHDDILDNNQDAHIL-GVNSITRINEVLDSIEN 110

Query: 146 GKRVVDTDYSVEDKFERLS-IVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            K   ++   +E    R   I++    R         I +GC+  C +CVV   RG   S
Sbjct: 111 AKNKNNSGRRLEIFSSRPDDILNAPRTRFNQNIHICQISQGCNNRCAYCVVRTARGKLKS 170

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK-CTFSDLLYSLSEIKGLVRL 263
             +  +V++ RK +  G  EI +  Q+   +   G+D +       LL  ++ I+G  ++
Sbjct: 171 FDIDSIVEDVRKAVSEGCREIWITSQDNAQY---GIDRQNGVLLPQLLDRVASIEGNFKI 227

Query: 264 RYTTSHPRDMS---DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
           R    +P  +    D L+K + + + +  +LHLP+QS S+++L  MNR +T  E  +II 
Sbjct: 228 RVGMMNPFSVYPILDDLLKVYEN-NKIYKFLHLPIQSASEKVLGYMNRNYTMSEVDEIIT 286

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           + RS   D+ + +D IVGFPGET+DDF  ++D V      +    +Y+PR   P +  LE
Sbjct: 287 KFRSRFNDLTLVTDIIVGFPGETEDDFYKSIDWVKNYRPDKVNISRYTPR---PHTKALE 343

Query: 381 --QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSV 438
              +D  +   R   L       ++      VG   +V + K  K KG ++ R+   + V
Sbjct: 344 YRNIDSRIVVRRSNELHHVCDTVKLESKKEMVGWHGKVFVSKDAKYKG-VMARTESYKPV 402

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           V+   N   G    V ITD       G+L 
Sbjct: 403 VIPESNLPPGQWCDVEITDTTSGYFLGKLT 432


>gi|260575306|ref|ZP_05843306.1| MiaB-like tRNA modifying enzyme YliG [Rhodobacter sp. SW2]
 gi|259022566|gb|EEW25862.1| MiaB-like tRNA modifying enzyme YliG [Rhodobacter sp. SW2]
          Length = 454

 Score =  147 bits (372), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 122/450 (27%), Positives = 200/450 (44%), Gaps = 40/450 (8%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC   + DS R+     ++GY        AD +++NTC   + A  +    +G     
Sbjct: 32  SLGCPKALVDSERILTRLRAEGYAISADYQGADAVIVNTCGFLDSAKAESLEAIGEALA- 90

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
           +N R        V+V GC+  A+   I    P V  V GPQ Y    E +  A  G    
Sbjct: 91  QNGR--------VIVTGCLG-ADAGYITGAHPKVLAVTGPQQY----EAVLDAVHGAVPP 137

Query: 151 DTDYSVED-KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209
             D  ++      +S+    Y+       +L I EGC+  C FC++P  RG  +SR    
Sbjct: 138 RPDPFIDLLPASAVSLTPRHYS-------YLKISEGCNHACKFCIIPDMRGRLVSRPAHA 190

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-------GEKCTFSDLLYSLSEIKGLVR 262
           +V EA +L+  GV E+ ++ Q+ +A+   GLD       G +   +DL   L  +   VR
Sbjct: 191 IVREAERLVAAGVRELLVISQDTSAY---GLDLKHATDKGHRAHITDLARDLGSLGAWVR 247

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           L Y   +P       + A G   +++PYL +P Q     +LK M R   A +    I   
Sbjct: 248 LHYVYPYPHVRDLIPLMAEG---LVLPYLDIPFQHADPGVLKRMARPAAAAKTLDEIAAW 304

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           RS+ PDI + S FIVG+PGETD +F+  +D +D+    +   F++    G   + + + V
Sbjct: 305 RSLCPDITLRSTFIVGYPGETDAEFQVLLDWMDEAQLDRVGCFQFENVKGARANALPDHV 364

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG--KLVGRSPWLQSVVL 440
              VK ER      K +    +   A VG+++ V+++    E    + +  +P +   + 
Sbjct: 365 APEVKQERWERFMLKAQAISEAKLAAKVGRVLPVIVDAVDAEGATCRTMADAPEIDGNLF 424

Query: 441 NSKNH---NIGDIIKVRITDVKISTLYGEL 467
             +       GDI++V + +     L+G L
Sbjct: 425 IDEGFEGLTPGDIVEVTVEEAGDYDLWGRL 454


>gi|254511063|ref|ZP_05123130.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Rhodobacteraceae
           bacterium KLH11]
 gi|221534774|gb|EEE37762.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Rhodobacteraceae
           bacterium KLH11]
          Length = 463

 Score =  147 bits (372), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 122/453 (26%), Positives = 200/453 (44%), Gaps = 40/453 (8%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC   + DS R+     ++GY        AD +++NTC   + A  +    +G     
Sbjct: 33  SLGCPKALVDSERILTRLRAEGYGISPDYAGADAVIVNTCGFLDSAKAESLEAIGEA--- 89

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               + E G   V+V GC+  AE + I    P +  V GP  Y ++ + +  A      V
Sbjct: 90  ----LVENGK--VIVTGCLG-AEPDYIREHHPRILAVTGPHQYEQVLDAVHAA------V 136

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
             D    + +  L    G     R  + +L I EGC+  C FC++P  RG   SR    V
Sbjct: 137 PPD---PNPYVDLLPASGVKLTPRHYS-YLKISEGCNHKCKFCIIPDMRGKLASRPAHAV 192

Query: 211 VDEARKLIDNGVCEITLLGQN-----------VNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           + EA KL+DNGV E+ ++ Q+           +N WR + +   +   +DL   L +   
Sbjct: 193 LREAEKLVDNGVRELLVISQDTSAYGLDRKYDMNPWRDREV---RSHITDLARELGQFDA 249

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
            VRL Y   +P       + A    +VL PYL +P Q     +LK M R     +    I
Sbjct: 250 WVRLHYVYPYPHVRELIPLMADAGCNVL-PYLDIPFQHAHPDVLKRMARPAAGAKTLDEI 308

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
              R+  PDI + S FIVG+PGET+ +F+  +D +D+    +   F+Y    G   +++ 
Sbjct: 309 AAWRATCPDITLRSTFIVGYPGETEAEFQTLLDWMDEAQLDRVGCFQYENVDGARSNDLP 368

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG--KLVGRSPWLQS 437
           + V   VK +R     +K +    +  +A VGQ++EV++++   E    +    +P +  
Sbjct: 369 DHVPAEVKQDRWERFMEKAQAISEAKLEAKVGQVLEVIVDEVDSEAATCRTKADAPEIDG 428

Query: 438 VVLNSKNHN---IGDIIKVRITDVKISTLYGEL 467
            +   +       GDI  V + +     L+G L
Sbjct: 429 NLFIDEGFEGLKPGDIATVEVDEAGEYDLWGRL 461


>gi|91773329|ref|YP_566021.1| MiaB-like tRNA modifying enzyme [Methanococcoides burtonii DSM
           6242]
 gi|91712344|gb|ABE52271.1| Radical SAM family protein with UPF0004 and MiaB-like domains
           [Methanococcoides burtonii DSM 6242]
          Length = 430

 Score =  147 bits (372), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 126/448 (28%), Positives = 204/448 (45%), Gaps = 25/448 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +  + +YGC  N   S  M       GYE V+ MD A+++V+NTC ++    +K+   L 
Sbjct: 2   KVHITTYGCSANQASSEIMIASVRDLGYELVDEMD-AEVVVINTCTVKYTTEQKI---LH 57

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           +I +L    I       VVV GC+ Q + E IL R+P  +++ G  +  ++ ++L     
Sbjct: 58  KIEDLGAKGID------VVVTGCMPQVQLETILERNPDAHIL-GVNSIAKIGQVLRSIEN 110

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
             +V   +       E    +   ++R         I +GCD  C +C+V   RG   S 
Sbjct: 111 SCKVGSRERVELITSEPEGFLKTAHSRFNPNIHICQISQGCDYSCAYCIVTIARGKLRSF 170

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
               +V++ R  +D G  EI L  Q+ N   G   D       +LL  +  I G  ++R 
Sbjct: 171 DADSIVEDIRMAVDEGCREIWLTSQD-NGQYGTDRD---VLLPELLRRIVAIPGDFKIRV 226

Query: 266 TTSHPRDMS---DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
              +P  ++   D LI+     D +   +HLP+QS SD +LK MNR H+  E   I+ R+
Sbjct: 227 GMMNPFSVTPILDDLIEVFRS-DKIYKIVHLPIQSASDNVLKKMNRYHSIEEANGIVFRL 285

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE-- 380
           R   PD+ + +D IVGF  E+D+DF  T++ V  +   +    +Y+PR   P +  LE  
Sbjct: 286 REAFPDLTLFTDIIVGFSSESDNDFNMTLEWVKTMKPDKVNISRYTPR---PLTKALEYR 342

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440
            +D  +  ER   L K     ++      +G   EV I    K KG ++ R+   + VVL
Sbjct: 343 NLDTRIVVERSNKLHKLCDTIKLDSKKKMIGWKGEVFISMDAKVKG-VMARTASYKPVVL 401

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
              + + G    V I D       G ++
Sbjct: 402 PEGSVSPGTSCNVEIYDTTAGYFLGRVL 429


>gi|315635637|ref|ZP_07890900.1| Fe-S oxidoreductase [Arcobacter butzleri JV22]
 gi|315479934|gb|EFU70604.1| Fe-S oxidoreductase [Arcobacter butzleri JV22]
          Length = 446

 Score =  147 bits (372), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 117/445 (26%), Positives = 216/445 (48%), Gaps = 31/445 (6%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ DS  M        Y+  +   +AD+I++NTC   + A ++    +  I +L
Sbjct: 16  SLGCTKNLVDSEVMLGRL--SDYQLTDDAQNADVIIVNTCGFIDSAKQES---INTILSL 70

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL--ERARFGKR 148
              R  E    ++V+AGC+++   EE+ +  P ++V  G   Y ++ EL+  +R+ F   
Sbjct: 71  HEDRKNES---VLVMAGCLSERYKEELQKELPEIDVFTGVGDYDKIDELVNEKRSNFTSE 127

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           V    +   +  ER+ I    Y+      A++ + EGC++ C+FC +P  +G   SR+L 
Sbjct: 128 V----FLASETNERV-ITGSSYH------AYVKLSEGCNQACSFCAIPSFKGKLHSRTLQ 176

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
            +V E + L+  G  + + + Q+ +++  + LD  K     L+  + +I+G+   R    
Sbjct: 177 SLVKEVKALVAKGYVDFSFVSQDSSSFL-RDLDI-KNGLELLIEEVEKIEGIKTARILYL 234

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
           +P   +  LI    D  V + Y  +P+Q  +  +LK M R     +  ++++ ++S +P+
Sbjct: 235 YPSTTTLSLIDKIADSKVFVNYFDMPLQHITPSMLKIMKRGKGVEQLNELMNHMKS-KPN 293

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
             + + FI G PGET+DDF      V+   + +A  F YS   GT      ++VD+ +  
Sbjct: 294 SFVRTTFIAGHPGETEDDFETLCSYVENFKFDRANVFSYSDEEGTTAETRTDKVDQELID 353

Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG--RSPWLQS----VVLNS 442
           ER   L + + +      +  VG+  EV I+   +E   L+   ++ W  S    + +N 
Sbjct: 354 ERAEILGEIISQTTQESLENEVGKTFEVYIDGESEEHEYLLSARKTIWAPSIDGEIYIND 413

Query: 443 KNHNIGDIIKV-RITDVKISTLYGE 466
              N G+ IK  +I  VK++ L G+
Sbjct: 414 NELNEGEQIKFGQIYTVKVTELVGD 438


>gi|325269255|ref|ZP_08135874.1| RNA modification enzyme [Prevotella multiformis DSM 16608]
 gi|324988484|gb|EGC20448.1| RNA modification enzyme [Prevotella multiformis DSM 16608]
          Length = 432

 Score =  147 bits (372), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 128/455 (28%), Positives = 210/455 (46%), Gaps = 49/455 (10%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEK----VYSFL 84
           + GC  N+ DS  +   F + GY   +       ++ V+NTC   E A E+    +  F+
Sbjct: 10  TMGCSKNLVDSELIMKQFEANGYHCTHDTKHPQGEIAVINTCGFIEAAKEESINTILEFV 69

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R +N + +R+         V GC++Q   +E+    P V+   G   Y +L   L +A 
Sbjct: 70  NRKKNGQLNRL--------YVMGCLSQRYKDELEAELPEVDKFYGKFNYKQLLTDLGKA- 120

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
                   D    +    L+          G  A++ I EGCD+ C +C +P   G   S
Sbjct: 121 --------DVPACNGVRHLTTP--------GHYAYVKIAEGCDRHCAYCAIPLITGRHHS 164

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R L  ++DE R+L+  GV E  ++ Q +  + G  LDG K   ++L+  +++I+G+  +R
Sbjct: 165 RPLEDILDEVRRLVGQGVKEFQIIEQELTYY-GVDLDG-KHHITELISRMADIEGVEWIR 222

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
              ++P      L+        +  YL +  Q  SD +L+ M+R  T  E   +I  IR 
Sbjct: 223 LHYAYPNQFPLDLLDVIAGKPNVCKYLDIAFQHISDHMLERMHRHVTRQETLDLIAEIRR 282

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT-PGSNMLEQVD 383
             P I + +  +VGFPGET++DF      V K  + +  +F YS   GT   ++  + V 
Sbjct: 283 RVPGIHLRTTLLVGFPGETEEDFEELKAFVRKTRFERMGAFAYSEEEGTYSATHYQDDVP 342

Query: 384 ENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQ 436
           E VK +R   L+ +Q+ + E+        VG I +V+I++  +E    +GR    SP + 
Sbjct: 343 EKVKQQRLDELMEIQQGISEE---LESEKVGSIFKVIIDR--REGDYYIGRTEFCSPEVD 397

Query: 437 SVVL---NSKNHNIGDIIKVRITDVKISTLYGELV 468
             VL     K  +IG    VRIT      L+GE+V
Sbjct: 398 PEVLVPAKGKALHIGRFYDVRITGSDEFDLFGEIV 432


>gi|284926662|gb|ADC29014.1| putative radical SAM domain family protein [Campylobacter jejuni
           subsp. jejuni IA3902]
          Length = 439

 Score =  147 bits (372), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 105/375 (28%), Positives = 188/375 (50%), Gaps = 21/375 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + ++ S GC  N+ DS  M  +     YE  +    AD++++NTC   + A ++    + 
Sbjct: 3   KLYLMSLGCNKNLVDSEIM--LGHLSAYELCDEPSKADVLIVNTCGFIDSAKKES---IN 57

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            I +L   R K   D L+VV GC+ Q   EE+++  P V++  G   Y R+ E++ +   
Sbjct: 58  AILDLHEQRKK---DSLLVVTGCLMQRYREELMKELPEVDLFTGVGDYERIDEMILKKT- 113

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                ++ Y   + F+R  I+ G  +      AF+ I EGC++ C+FC +P  +G   SR
Sbjct: 114 -NLFSNSTYLQSENFKR--IITGSNSH-----AFIKIAEGCNQKCSFCAIPSFKGKLKSR 165

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            +S ++ E + L+  G  + + + Q+ +++      GEK     L+  + +IKG+   R 
Sbjct: 166 EISSIIAELKDLVARGYKDFSFIAQDTSSYLFD--KGEKDGLIRLIGEVEKIKGIRAARI 223

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
              +P   S+ LIK     ++ + Y  +P+Q  SD +LK M R   +   +++++ ++S 
Sbjct: 224 LYLYPTSASEALIKRIIASEIFVNYFDMPLQHISDNMLKIMKRGANSTRLKEMLNLMKSA 283

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P+  + + FIVG PGE++ DF    + V   G+ +   F YS    T   +M EQV   
Sbjct: 284 -PNSFLRTGFIVGHPGESEADFEELCEFVKDFGFDRVSVFAYSKEEDTAAFDM-EQVSFK 341

Query: 386 VKAERLLCLQKKLRE 400
           V  +RL  ++K + E
Sbjct: 342 VINKRLKIIEKIVNE 356


>gi|325831452|ref|ZP_08164706.1| tRNA methylthiotransferase YqeV [Eggerthella sp. HGA1]
 gi|325486706|gb|EGC89154.1| tRNA methylthiotransferase YqeV [Eggerthella sp. HGA1]
          Length = 417

 Score =  147 bits (372), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 120/413 (29%), Positives = 187/413 (45%), Gaps = 48/413 (11%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           F V + GC++N  +S         +G E   S   ADLIV+NTC +  +A +K    + R
Sbjct: 10  FAVVNLGCKVNRVESDDAAARLALRGVE--TSEASADLIVVNTCTVTGEAEKKTRKAVRR 67

Query: 87  -IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +R   ++R        V+V GC A  +          V+VV   Q    +  L + A F
Sbjct: 68  ALRANDHAR--------VLVTGCAAAIDAAFYEALDERVSVVGKAQLAQAIDVLFDEAPF 119

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                  D  +         +  G+  + GV     +Q+GCD  CT+C+V   RG   SR
Sbjct: 120 SP---GEDAPLH--------IGSGFRTRVGVK----VQDGCDNACTYCIVHVARGRATSR 164

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDL--------------- 250
               VV E       G  EI L G N+ ++     DG +   S +               
Sbjct: 165 PADDVVRECASYARAGAREIVLTGINLGSY----CDGGRRDPSAIRLAALLRRLLDETAD 220

Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLD-VLMPYLHLPVQSGSDRILKSMNRR 309
           L++  E     R R ++  PRD+ D LI      D  +  +LHLP+Q+GS ++L+ M R 
Sbjct: 221 LHAPGEAPA--RFRVSSIEPRDVDDALIDLLASADGRVCRHLHLPLQAGSSKVLREMARP 278

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369
           + A  +  +++R+    P +A+S+D I GFPGETD +F+ T+D+     +A+  +F YSP
Sbjct: 279 YDAERFVALVERLYRRIPQLALSTDIIAGFPGETDAEFQETLDVARACRFAKIHAFPYSP 338

Query: 370 RLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422
           R+GTP +   +QV    K  R   L+    E + S      G +   L+E+ G
Sbjct: 339 RIGTPAAERADQVPPAFKEARAAMLRALGDELRASERARRAGTVELALVEEGG 391


>gi|206895107|ref|YP_002247157.1| 2-methylthioadenine synthetase [Coprothermobacter proteolyticus DSM
           5265]
 gi|206737724|gb|ACI16802.1| 2-methylthioadenine synthetase [Coprothermobacter proteolyticus DSM
           5265]
          Length = 424

 Score =  147 bits (372), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 117/447 (26%), Positives = 214/447 (47%), Gaps = 45/447 (10%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQ----GYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + +V++ GC  N+   +R +D F+ Q     YE V S ++AD+IV+NTC     A E+  
Sbjct: 5   KIYVETLGCPKNL---VRTQD-FYRQLDYSNYEVVYSPEEADVIVVNTCGFIADAVEESL 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           +   +++       +E  D ++V AGCV    G E+++          P+  Y +P    
Sbjct: 61  TVALQLK-------EEYPDSVLVFAGCVPLRFGTELVQSE-------LPEFDYVVPGFNM 106

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
            + F +              + S++   Y       A+++I EGC+  C++C +P   G 
Sbjct: 107 PSAFSEYQGPL---------QTSVLTYPY-------AYVSIAEGCNGRCSYCTIPKFWGS 150

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK-GL 260
             SR   ++VDE  +L + G+ E+ L+ Q+  AW G  L G + +   LL +L + +   
Sbjct: 151 LKSRPAVEIVDEINELYEIGIREVILVSQDTGAW-GTDLYG-RPSLELLLRALRDTQIPW 208

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
           +RL Y   +P  +++ L+ A  D   ++PY  +PVQSGSD++L+ M R +   +  Q + 
Sbjct: 209 IRLMYV--NPTFITEKLLLAWKDTGRVLPYFDIPVQSGSDKVLRQMRRGYDRNQILQALK 266

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
            I  V  +    +  +VGFPGET+DD +AT+DL+ +  +     F Y          ++ 
Sbjct: 267 LIDGVFAENTKRTSIMVGFPGETEDDVQATLDLLIQGEFHHVGVFGYCDEEEADSHKLVP 326

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPWLQSV 438
           +VD  +   R    +    E    + + CVG+  + L+E     +  G++ G++P +  +
Sbjct: 327 KVDPEIINTRKTATEAVALELHRLWEEKCVGKTYQCLVEASSGSEFIGRIWGQAPEIDGM 386

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYG 465
            L       G+++++ +   K   L G
Sbjct: 387 FLGKGEVEPGEMVEIVVEKTKPGQLIG 413


>gi|303245617|ref|ZP_07331900.1| MiaB-like tRNA modifying enzyme YliG [Desulfovibrio fructosovorans
           JJ]
 gi|302492880|gb|EFL52745.1| MiaB-like tRNA modifying enzyme YliG [Desulfovibrio fructosovorans
           JJ]
          Length = 432

 Score =  147 bits (372), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 124/423 (29%), Positives = 184/423 (43%), Gaps = 31/423 (7%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDD---ADLIVLNTCHIREKAAEKVYSFLGRI 87
           S GC  N  D+   E    +  + R   +DD   ADL+V+NTC     A E+    +G I
Sbjct: 11  SLGCPKNRVDT---ETALGALPF-RTVMVDDPAAADLVVVNTCAFIAPAVEES---VGAI 63

Query: 88  RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147
             L  +  +      + V GC+    GEE+    P V++   P     +P        G+
Sbjct: 64  LELAATIRECSPRPRLAVMGCLPARYGEELREGLPEVDIWGLPTELDLIP--------GR 115

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
                    +    R S     Y       A+L I EGCD  C +C +P  RG   SR +
Sbjct: 116 LATALGADADAPAGRRSSTPPSY-------AYLKIAEGCDHACRYCTIPAIRGKLASRPI 168

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
             ++ EA+ LID G  E+ L+ Q+V A+ G+ L G K     LL  L  + GL  LR   
Sbjct: 169 DGLITEAKGLIDQGARELVLVAQDVTAY-GRDL-GMKEGLKALLEKLLPLPGLSWLRLLY 226

Query: 268 SHPRDMSDCLIK-AHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
            +P  +++ L+    G     +PY  +P Q     +L +M R   A +   I+DR+R   
Sbjct: 227 LYPSGVTESLLSFLAGAGRPFVPYFDIPFQHVHPEMLAAMARPKAA-DADTIVDRVRKHF 285

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           PD A+ S FIVG PGE    F A +  V +        F Y    GTP + M  QV  +V
Sbjct: 286 PDAALRSTFIVGLPGEKKAHFEALLAFVKRTRLMHVGVFPYHREDGTPAATMPGQVRRDV 345

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSVVLNSKNH 445
           K  R+  +    +E      +   G   EVL++  HG+  G  +GR  W Q+  ++   +
Sbjct: 346 KERRMAAIMAAQKEISADLLERYAGTEQEVLVDAVHGEWPGLHIGRC-WFQAPEIDGVTY 404

Query: 446 NIG 448
             G
Sbjct: 405 VSG 407


>gi|253565664|ref|ZP_04843119.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|265764040|ref|ZP_06092608.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacteroides sp. 2_1_16]
 gi|251945943|gb|EES86350.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|263256648|gb|EEZ27994.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacteroides sp. 2_1_16]
          Length = 432

 Score =  147 bits (371), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 119/448 (26%), Positives = 215/448 (47%), Gaps = 35/448 (7%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDD--ADLIVLNTCHIREKAAEKVYSFLGRIR 88
           + GC  N+ DS ++       GY+  +  +    ++ V+NTC     A E+  + +    
Sbjct: 10  TLGCSKNLVDSEQLMRQLEEAGYDVTHDSEKPTGEIAVINTCGFIGDAKEESINMI---- 65

Query: 89  NLKNSRIKEGGDL-LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147
            L+ ++ KE G+L  + V GC+++   +E+    P V+   G   +  L + L +A    
Sbjct: 66  -LEFAQEKEEGNLEKLFVMGCLSERYLKELAIEIPQVDKFYGKFNWKGLLQDLGKA---- 120

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
                 Y  E   ER       Y       A+L I EGCD+ C++C +P   G  +SR +
Sbjct: 121 ------YHEELHIERTLTTPKHY-------AYLKISEGCDRKCSYCAIPIITGRHVSRPI 167

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYT 266
            +++DE R L+ NGV E  ++ Q +  +   G+D  +K    +L+  +SEI G+  +R  
Sbjct: 168 EEILDEVRYLVSNGVKEFQVIAQELTYY---GVDLYKKQMLPELIERISEIPGVEWIRLH 224

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
            ++P    + L +   + D +  Y+ + +Q  SD +L+ M R  T  E  ++I++ R   
Sbjct: 225 YAYPAHFPEELFRVMRERDNVCKYMDIALQHISDNMLQRMRRHVTKKETYRLIEQFRKEV 284

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT-PGSNMLEQVDEN 385
           P I + +  +VG PGET++DF    + V K+ + +  +F YS   GT   +N  + + + 
Sbjct: 285 PGIHLRTTLMVGHPGETEEDFEELKEFVRKVRFDRMGAFTYSEEEGTYAAANYEDSIPQE 344

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPWLQSVVL--- 440
           +K  RL  L    +      + + VGQ ++V+I++   E   G+    SP +   VL   
Sbjct: 345 LKQARLDELMAIQQGISTELSASKVGQKMKVIIDRIEGEYYIGRTEFDSPEVDPEVLIRC 404

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
              N  IG+  +V++ D     L+GE++
Sbjct: 405 EGDNLMIGNFYQVQVIDSDEFDLFGEII 432


>gi|297566746|ref|YP_003685718.1| MiaB-like tRNA modifying enzyme [Meiothermus silvanus DSM 9946]
 gi|296851195|gb|ADH64210.1| MiaB-like tRNA modifying enzyme [Meiothermus silvanus DSM 9946]
          Length = 443

 Score =  147 bits (371), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 117/450 (26%), Positives = 217/450 (48%), Gaps = 34/450 (7%)

Query: 21  CIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKV 80
            + P R  V++ GC++N  +S  +  +  +   + V   D ADL+V+NTC +   A    
Sbjct: 6   ALSPVRLAVRTLGCKVNQVESDALVGLLRALQPQVVRLEDGADLVVINTCAVTTTAEADA 65

Query: 81  YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140
              + R R       +      +VV GC A+   +++       + VV       LP ++
Sbjct: 66  RKEVRRAR-------RANPQAFIVVTGCYAELAPDQLAELG--ADAVVPNARKAELPRVI 116

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
               FG   +  D       E     + G      V +F+ +Q+GC+  C +C++P  RG
Sbjct: 117 LE-HFG---LPADPLTTPPNEFWGAGERGL-LNNWVRSFVKVQDGCNAGCAYCIIPRLRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG--KGLDGEKCTFSDLLYSLSEIK 258
            E  R+    + EAR L++ GV EI L G  + ++RG  +G+ G       L+  L  + 
Sbjct: 172 RERHRASGDALAEARGLLEAGVQEIVLTGVRLGSYRGHPQGIAG-------LVEELVLMG 224

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDV-LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
             VRL  ++  P D    L++        + P+LHL +Q+GSDR+LK M RR+    YR+
Sbjct: 225 AKVRL--SSIEPEDTGRELLEVIARYAPRVRPHLHLSLQTGSDRLLKLMGRRYDTTYYRE 282

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
           ++    ++ P  A+++D I G P ET+ + + T+ L+ ++  ++  +F Y+PR  T  ++
Sbjct: 283 LVQMAYALIPGFALTTDVIAGLPTETEAEHQETLALLRELRPSRVHAFTYTPRPKTRAAS 342

Query: 378 MLEQVDENVK--AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWL 435
           + +   E  K   + ++ L ++L   +++     +G  +EVL+E   + +G+ VG +P  
Sbjct: 343 LPQVPIEERKRRTKEIIALAQELAAGRIAPK---LGSRVEVLLES--RREGQWVGHTPDY 397

Query: 436 QSVVLNSKNHNIGDIIKVRITDVKISTLYG 465
             V+ +      G  + V++ +++  TL G
Sbjct: 398 YEVLADGAGRQ-GQTVWVKVREIRGYTLLG 426


>gi|154148690|ref|YP_001406630.1| hypothetical protein CHAB381_1072 [Campylobacter hominis ATCC
           BAA-381]
 gi|153804699|gb|ABS51706.1| conserved hypothetical protein [Campylobacter hominis ATCC BAA-381]
          Length = 414

 Score =  147 bits (371), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 107/399 (26%), Positives = 188/399 (47%), Gaps = 27/399 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + ++K++GC+ N+YDS  +       G E     + AD +++N+C +   A   V +F+ 
Sbjct: 2   KIYIKTFGCRTNIYDSELIMAQIARFGGEICKDENLADFVIINSCTVTNGADSDVRNFIY 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R+               V++ GC A  +G+E   R  I  V  G     R+ E L +   
Sbjct: 62  RMNRAGKK---------VIITGCAALNKGKEFFERGEIFGVF-GMSNKNRIAEFLNK--- 108

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G+R  +        F+  ++++   + K    AF+ IQEGCD  C++C++P  RG   S 
Sbjct: 109 GERFCELG---NLNFKENALLN---DFKSHTKAFIKIQEGCDFNCSYCIIPSVRGKSRSV 162

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
             + +++E +K+I     EI L G N+ ++   G D    +  +LL  L +I GL R+R 
Sbjct: 163 DENLIIEEVKKIIAGNHTEIVLTGTNIGSY---GKDN-GSSLGELLQKLGKISGLKRIRL 218

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
            +  P  + D   +   D   L  +LH+ +Q  S ++L  M RR+ A +  ++ + +   
Sbjct: 219 GSIEPSQI-DEKFREILDEPWLEKHLHIALQHTSQKMLTIMRRRNKALKDLKLFNEL--A 275

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
               A+ +DFIV  PGETD+ +   +    K       +F +SPR GT  + +  + +  
Sbjct: 276 ERGFALGTDFIVAHPGETDEIWSEALTNFKKFPLTHLHAFIFSPRDGTHSAGLKIETNGI 335

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE 424
              +RL  LQ  +RE  + F  +    +  VL+E+   E
Sbjct: 336 EAKKRLKTLQSIIRENNLKFRKSHYNNLF-VLVERKNGE 373


>gi|119575831|gb|EAW55427.1| CDK5 regulatory subunit associated protein 1-like 1, isoform CRA_c
           [Homo sapiens]
          Length = 488

 Score =  147 bits (371), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 117/403 (29%), Positives = 191/403 (47%), Gaps = 49/403 (12%)

Query: 53  YERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQA 112
           ++   +  DADL +LN+C ++  A +    F   I+  +    K      +V+AGCV QA
Sbjct: 22  HQVTENASDADLWLLNSCTVKNPAED---HFRNSIKKAQEENKK------IVLAGCVPQA 72

Query: 113 EGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERL--SIVDGGY 170
           +  +   +      ++G Q   R+ E++E    G  V       +D   RL  + +D   
Sbjct: 73  QPRQDYLKG---LSIIGVQQIDRVVEVVEETIKGHSVRLLGQK-KDNGRRLGGARLDLPK 128

Query: 171 NRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQ 230
            RK  +   ++I  GC   CT+C   + RG   S  + ++VD A++    GVCEI L  +
Sbjct: 129 IRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELVDRAKQSFQEGVCEIWLTSE 188

Query: 231 NVNAWRGKGLDGEKCTFSDLLYSLSEI--------KGLVRLRYTTSHPRDMSDCLIKAHG 282
           +  A+ G+ +         LL+ L E+         G+    Y   H  +M+  L     
Sbjct: 189 DTGAY-GRDIG---TNLPTLLWKLVEVIPEGAMLRLGMTNPPYILEHLEEMAKIL----- 239

Query: 283 DLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGE 342
           +   +  +LH+PVQS SD +L  M R +   ++++++D ++   P I I++D I GFPGE
Sbjct: 240 NHPRVYAFLHIPVQSASDSVLMEMKREYCVADFKRVVDFLKEKVPGITIATDIICGFPGE 299

Query: 343 TDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCL-------- 394
           TD DF+ T+ LV++  +   F  ++ PR GTP + M EQV   V  ER   L        
Sbjct: 300 TDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKM-EQVPAQVIGERQQVLVTEESFDS 358

Query: 395 -----QKKLREQ-QVSFNDACVGQIIEVLIEKHGKE--KGKLV 429
                  +  EQ  V  N A +G+++EV I + GK   KG+ V
Sbjct: 359 KFYVAHNQFYEQVLVPKNPAFMGKMVEVDIYESGKHFMKGQPV 401


>gi|237752883|ref|ZP_04583363.1| 2-methylthioadenine synthetase [Helicobacter winghamensis ATCC
           BAA-430]
 gi|229375150|gb|EEO25241.1| 2-methylthioadenine synthetase [Helicobacter winghamensis ATCC
           BAA-430]
          Length = 366

 Score =  147 bits (371), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 103/386 (26%), Positives = 190/386 (49%), Gaps = 32/386 (8%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           +V Q+ + K++GC+ N++D+  M +    + + +    +++D++V+N+C +   A   V 
Sbjct: 1   MVKQKVYFKTFGCRTNLFDTQVMINAL--KDFAQTPYEEESDIVVVNSCTVTNGADSGVR 58

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           +++ R++N       EG    +   GC  Q +G+ +L R  +V  V G     ++  LL+
Sbjct: 59  NYINRLQN-------EGKR--IFFTGCGVQTQGQALLDRG-LVRGVFGHSHKEKINTLLK 108

Query: 142 RARFGKRVVDTDYSVEDKFERLS--IVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           +        D+ + + D  E L   I+     + R   AF+ IQEGCD  C++C++P  R
Sbjct: 109 K--------DSSFFLSDDLEYLENDILSDFVGKSR---AFIKIQEGCDFACSYCIIPSVR 157

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G   S S  +++ +   L   G  E  + G N+ +W GK         + L+ SL EI  
Sbjct: 158 GKARSFSQEKILKQVESLAQKGFSEFIITGTNMGSW-GKDFG---LNIATLVESLCEIPL 213

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           L RLR  +  P  +    +    +  +   +LH+ +Q  S ++LK MNR +T  +  ++ 
Sbjct: 214 LKRLRIGSLEPSQIDTHFLSVLENPKI-ERHLHIALQHTSPKMLKLMNRYNTFEKDLELF 272

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
           + +   +   A+ SDFIVG PGE  + +        K       SF YSPR  TP + + 
Sbjct: 273 NTLS--QKGFALGSDFIVGHPGENKEVWEEAFLNFSKFPLTHLHSFIYSPRDNTPSALLK 330

Query: 380 EQVDENVKAERLLCLQKKLREQQVSF 405
           ++++ N+  ER   ++ K++E  ++F
Sbjct: 331 DRINGNIAKERKKQIEGKVQENNLNF 356


>gi|260063507|ref|YP_003196587.1| putative oxidoreductase [Robiginitalea biformata HTCC2501]
 gi|88782951|gb|EAR14125.1| putative oxidoreductase [Robiginitalea biformata HTCC2501]
          Length = 434

 Score =  147 bits (371), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 132/458 (28%), Positives = 223/458 (48%), Gaps = 45/458 (9%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC-HIREKAAEKVYSF 83
            R  V + GC  N+YDS  +     +   + V+   + +++V+NTC  I     E V + 
Sbjct: 9   NRINVVTLGCSKNLYDSEVLMGQLKASEKDVVHE-GEGNIVVINTCGFIANAKEESVNTI 67

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           L  +R  ++ R+ +     V V GC+++    ++ +  P V+   G +    LP LL   
Sbjct: 68  LEYVRQKEDGRVDQ-----VFVTGCLSERYKPDLEKEIPDVDAYFGTRD---LPRLL--- 116

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
               + +  DY  E   ERL+     Y       A+L I EGCD+ C+FC +P  RG   
Sbjct: 117 ----KALGADYRHELVGERLTTTPANY-------AYLKIAEGCDRPCSFCAIPLMRGGHR 165

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGL-- 260
           S+ +  +V EA  L   GV E+ L+ Q++  +   GLD  +K   +DLL +L++++G+  
Sbjct: 166 SQPVEDLVREAESLAAKGVKELILIAQDLTYY---GLDLYKKRALADLLRALAKVEGIEW 222

Query: 261 VRLRYT--TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           +RL Y   T  P D+ + +++A   +     Y+ +P+Q  SD ILKSM R  T  +  ++
Sbjct: 223 IRLHYAFPTGFPMDVLE-VMRAEPKV---CNYIDIPLQHISDPILKSMRRGTTRAKTTRL 278

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           ++  R   P +AI +  IVG+PGETD DF    + V +  + +   F YS    T   N+
Sbjct: 279 LEAFREKVPGMAIRTTLIVGYPGETDADFEILKEWVRETRFERLGCFTYSHEENTHAFNL 338

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPW 434
            + V E  K  R   + +   +     N   VG+    +I++  +E G  +GR    SP 
Sbjct: 339 EDDVSEATKQARASEIMELQAQISWELNQEKVGKTFRCMIDR--QEGGYFIGRTEFDSPD 396

Query: 435 LQSVV-LNSKNH--NIGDIIKVRITDVKISTLYGELVV 469
           + + V +++  H   +GD  ++R+T+     L GE V 
Sbjct: 397 VDNEVRVDAAKHYLRVGDFAEIRVTEAGDFDLIGEPVA 434


>gi|220905544|ref|YP_002480856.1| MiaB-like tRNA modifying protein YliG [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
 gi|219869843|gb|ACL50178.1| MiaB-like tRNA modifying enzyme YliG [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
          Length = 442

 Score =  147 bits (371), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 126/421 (29%), Positives = 192/421 (45%), Gaps = 34/421 (8%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA-EKVYSFL 84
           + +  S GC  N  DS R+     +     V  M  ADL+ +NTC   + A  E V + L
Sbjct: 11  KVWSLSLGCPKNRVDSERLLGSLGAP-VSHVEHMGRADLVFINTCGFIDPAVRESVRAVL 69

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRS-PIVNVVVGPQTYYRLPELLERA 143
              + L     K     L+ V GC+    G E L    P V++ +      R P ++  A
Sbjct: 70  DAGQRLGRCSKKP----LLAVGGCMVGRYGAENLAEDLPEVDLWLPTADLDRWPGMVAEA 125

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT-AFLTIQEGCDKFCTFCVVPYTRGIE 202
                       +      + +  GG     G + A+L I EGC   C FC +P  RG  
Sbjct: 126 ------------LALPTPPVRMPGGGRLLSTGPSYAWLKIGEGCRHKCAFCTIPSIRGGL 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLV 261
            S     +VDEAR L+  GV E+ L+ Q++ AW   G D G K     LL  L+ + GL 
Sbjct: 174 HSLPAEYIVDEARALLGQGVRELALVAQDLTAW---GADLGMKNGLPSLLEKLAALDGLA 230

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDV-LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            LR    +P  ++  L+    D    L+PYL +P+Q     +L  M R   A   R+++D
Sbjct: 231 WLRLLYLYPSGVTPELLALIRDTGAPLLPYLDIPLQHAHPDVLSRMGRPF-AGNPRRVLD 289

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
            +R   P  A+ + FIVG+PGETD+ F +    V++  +     F Y    GT  + + +
Sbjct: 290 AVRQNLPHAALRTTFIVGYPGETDEQFESLCRFVEESAFQHVGVFAYQAEDGTEAATLPD 349

Query: 381 QVDENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSPWLQ 436
           QV + VK  R   L+ +Q  + E+ ++   A VG  ++VL++  H +  G   GR  WLQ
Sbjct: 350 QVPDAVKQWRRDTLMDIQADISERLLA---AHVGSRMQVLVDAPHPEWPGLHSGRV-WLQ 405

Query: 437 S 437
           +
Sbjct: 406 A 406


>gi|256389762|ref|YP_003111326.1| MiaB-like tRNA modifying enzyme YliG [Catenulispora acidiphila DSM
           44928]
 gi|256355988|gb|ACU69485.1| MiaB-like tRNA modifying enzyme YliG [Catenulispora acidiphila DSM
           44928]
          Length = 474

 Score =  147 bits (371), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 129/479 (26%), Positives = 210/479 (43%), Gaps = 57/479 (11%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNS---MDDADLIVLNTCHIREKAAEKVYSFLGRI 87
           + GC  N  DS  +     S G+E  +      ++D+IV+NTC   E A +     L   
Sbjct: 12  TLGCGRNEVDSEELAARLESAGWELADPDSVPGESDIIVVNTCGFIESAKKTSLETLVAA 71

Query: 88  RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147
            N +           VV  GCVA+  G+ +    P V+ V+    Y  + + L+    GK
Sbjct: 72  SNAEAK---------VVAVGCVAERYGKRLAEALPEVDAVLSFDDYPDISQRLDDVVRGK 122

Query: 148 RVVDTDYSVEDKFERL-----------SIVDGGYN----------------RKRG----- 175
           +     ++  D+   L           S+V  G+                 RKR      
Sbjct: 123 K--HESHTPRDRRRLLPIAPVDRANNSSVVAPGHGIVRQDSEAGLGGSIFLRKRLGGGGP 180

Query: 176 ----VTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQN 231
               V A L +  GCD+ C+FC +P  RG  ISR+   +V EA  L D GV E+ L+ +N
Sbjct: 181 LGDGVVAPLKLASGCDRRCSFCAIPSFRGAFISRTPDDIVAEAEWLADAGVRELILVSEN 240

Query: 232 VNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL 291
             ++ GK   G+      LL  L+ +   VR+ Y    P ++   LI+A G +  +  Y 
Sbjct: 241 STSY-GKDF-GDLQALEKLLPRLTSLVSRVRISYL--QPAELRPTLIEAIGGIPGVASYF 296

Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351
            L  Q  S  +L+ M R      + +++D+IR + P+  + S+FIVGFPGET+DD+    
Sbjct: 297 DLSFQHASGPVLRRMRRFGDRERFLELLDKIRVIAPEAGMRSNFIVGFPGETEDDYGEVE 356

Query: 352 DLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVG 411
             V +        F YS   GT    + ++V+++  A+R+  L    R+         VG
Sbjct: 357 RFVSEARLDAVGVFGYSDEEGTEALGLPDKVEQSQIADRVARLTVISRKAMDDRAAERVG 416

Query: 412 QIIEVLIEKHGKEKGKLVGRSPWLQS-VVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
             IEV+++  G  +G    ++P +   V L   +   GD+++ R+T    + L  E + 
Sbjct: 417 SEIEVIVKHPG--RGWAAHQAPAVDGFVTLTGSSSEAGDVLRARVTGQDGANLIAEALA 473


>gi|319762033|ref|YP_004125970.1| miab-like tRNA modifying enzyme ylig [Alicycliphilus denitrificans
           BC]
 gi|317116594|gb|ADU99082.1| MiaB-like tRNA modifying enzyme YliG [Alicycliphilus denitrificans
           BC]
          Length = 463

 Score =  147 bits (371), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 128/485 (26%), Positives = 213/485 (43%), Gaps = 58/485 (11%)

Query: 14  VSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIR 73
           +S+ +     P+  FV S GC  N+ DS  +     ++GYE   +   ADL+++NTC   
Sbjct: 1   MSEALSPTKTPKIGFV-SLGCPKNLTDSELILTQLSAEGYETSKTFQGADLVIVNTCGFI 59

Query: 74  EKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCV-AQAE---GEEILRRSPIVNVVVG 129
           + A  +    +G         + + G   V+V GC+ A+A+   G  +    P V  V G
Sbjct: 60  DDAVRESLDTIGEA-------LADNGK--VIVTGCLGARADDGGGNLVKGVHPNVLAVTG 110

Query: 130 PQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT------AFLTIQ 183
           P       E++E       V        D F  L +V G +  + G+       A+L I 
Sbjct: 111 PHAAQ---EVMEH------VHQHLPKPHDPF--LDLVPGTFG-EAGIKLTPRHYAYLKIS 158

Query: 184 EGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA--------- 234
           EGC+  CTFC++P  RG  +SR +  V++EAR L + GV E+ ++ Q+ +A         
Sbjct: 159 EGCNHRCTFCIIPSMRGDLVSRPIGDVLNEARALFEGGVKELLVVSQDTSAYGVDVKYRT 218

Query: 235 --WRGKGLDGEKCTFSDLLYSLSEIKG-LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL 291
             W GK +          L +++   G  VRL Y   +P       +   G   +++PYL
Sbjct: 219 GFWDGKPVRTRLLELVQTLGAIARPYGAWVRLHYVYPYPSVDDIIPLMQEG---LVLPYL 275

Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351
            +P Q     +LK M R  +  +  + I R R + P++ + S FI GFPGET+++F   +
Sbjct: 276 DVPFQHSHPDVLKRMKRPASGEKNLERIQRWREMCPELVVRSTFIAGFPGETEEEFEHLL 335

Query: 352 DLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVG 411
             + +    +A  F YS   G   +++   +   ++ ER         E   +     VG
Sbjct: 336 QFLREAQIDRAGCFAYSNVRGAAANDLPGMLPMELREERRARFMAVAEEVSTARLQRRVG 395

Query: 412 QIIEVLIEKHGKEKGKLVGRSPWLQSVVLN-----------SKNHNIGDIIKVRITDVKI 460
           Q ++VL++K      K      W  +  ++           SK + +GD +KVRI   + 
Sbjct: 396 QTLQVLVDKAVGLGKKGGVGRSWADAPEIDGLVHLLPPEKISKTYKVGDFVKVRIVGTQG 455

Query: 461 STLYG 465
             L G
Sbjct: 456 HDLVG 460


>gi|145591528|ref|YP_001153530.1| RNA modification protein [Pyrobaculum arsenaticum DSM 13514]
 gi|145283296|gb|ABP50878.1| RNA modification enzyme, MiaB family [Pyrobaculum arsenaticum DSM
           13514]
          Length = 416

 Score =  147 bits (371), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 147/458 (32%), Positives = 219/458 (47%), Gaps = 60/458 (13%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R ++++YGC +   D+   E +    G   V   +DAD++++ TC +RE    +    L 
Sbjct: 3   RAYIETYGCWLAKADA---EIIRQRLGLVAVERPEDADVVMIYTCAVREDGEVRQ---LA 56

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           RIR L   R KE     VVVAGC+A+      LR  P       P      P  +E  + 
Sbjct: 57  RIRELAGLR-KE-----VVVAGCLAK------LR--PYTIKSAAPNARLLYPSEVEGGQ- 101

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG---IE 202
            KR    +  V  ++E             GV   + +Q GC   CTFC   YTRG     
Sbjct: 102 -KR----EMKVLPRYEG------------GVIYTVPLQVGCLGNCTFCATKYTRGGAGYV 144

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE---KCTFSDLLYS-LSEIK 258
            S +   VV   ++ +  G  EI L GQ+V  +   G D       +  DLL   L E++
Sbjct: 145 KSANPDDVVRHVKEAVARGAKEIYLTGQDVITY---GFDMRWRPGWSLPDLLERILREVE 201

Query: 259 GLVRLRYTTSHP----RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
           G  R+R   S P    R     L    GD  V   Y HLPVQSGSDR+L++M RR+T  E
Sbjct: 202 GEYRVRIGMSEPWVFARFADRLLDIVKGDRRVYR-YFHLPVQSGSDRVLRAMGRRYTVDE 260

Query: 315 YRQIIDRIRSVRPDIA-ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
           YR+++ +IR    + A +++D IVGFPGE +DDF  ++ LV+++   +    ++SPR  T
Sbjct: 261 YRELVRKIRKTLGEFAFVATDIIVGFPGEAEDDFWESVKLVEELQLDKVHVARFSPRPFT 320

Query: 374 PGSNMLEQVDENVKAERLLCLQK-KLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS 432
             + M  QV +  K  R   L +  LR  ++  N   VG    VLI++   + G +VGR+
Sbjct: 321 EAAVMPRQVPDAEKKRRSKILSEVSLRVARLR-NGLRVGSRDVVLIDE--VDHGLVVGRA 377

Query: 433 PWLQSVVLNSKNHN--IGDIIKVRITDVKISTLYGELV 468
              + VV+   + +  IG   +V+I       LYG++V
Sbjct: 378 SDYRQVVVKRGHGDGLIGQYREVQIVAAGAVYLYGDIV 415


>gi|269127512|ref|YP_003300882.1| MiaB-like tRNA modifying enzyme YliG [Thermomonospora curvata DSM
           43183]
 gi|268312470|gb|ACY98844.1| MiaB-like tRNA modifying enzyme YliG [Thermomonospora curvata DSM
           43183]
          Length = 484

 Score =  147 bits (371), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 125/468 (26%), Positives = 202/468 (43%), Gaps = 43/468 (9%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC  N  DS  +       G+  V+    A ++V+NTC   + A +     L     +
Sbjct: 11  TLGCARNEVDSEELAARLEDAGWTLVDEAGQAGVVVVNTCGFIDAAKKDSIDTL---LAV 67

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR-- 148
            +S  K      VV AGC+A+  G E+    P  + V+    Y  + E LE    G R  
Sbjct: 68  HDSGAK------VVAAGCLAERYGAELAESLPEADAVLSFDDYAHIGERLEEVLAGIRRP 121

Query: 149 ----------VVDTDYSVEDKFERLSIVDGG-------------YNRKR---GVTAFLTI 182
                     +  T  +  +K   ++I   G               R+R   G  A L +
Sbjct: 122 AHTPRDRRTLLPITPVARREKARDVAIPGHGELPEGLAPASGPRVLRRRLEGGPVAPLKL 181

Query: 183 QEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG 242
             GCD+ CTFC +P  RG  +SR   +V+ EA  L + GV E+ L+ +N  ++ GK L G
Sbjct: 182 ASGCDRRCTFCAIPAFRGAYVSRDPQEVLAEAAWLAERGVREVVLVSENSTSY-GKDL-G 239

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
           +      LL  L+ I G+ R+R +   P ++   LI+       + PY  L  Q  S  +
Sbjct: 240 DLRALEKLLPQLAAIDGIERVRLSYLQPAELRPGLIEVLCTTPGVAPYFDLSFQHASGPV 299

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           L+ M R      + +++ RIR   PD  + S+FIVGFPGET+DD    M  + +      
Sbjct: 300 LRRMRRFGDRETFGELLARIRDKAPDAGVRSNFIVGFPGETEDDLEELMAFLSEARLDAI 359

Query: 363 FSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKH- 421
             F YS   GT  + +  ++DE   A R+  +     E      +  +G  + VL+E+  
Sbjct: 360 GVFGYSDEEGTEAAALDGKLDEEEIAHRVAEVSHLAEELTAQRAEERIGTTVRVLLEEQV 419

Query: 422 --GKEKGKLVGRSPWLQSVVL-NSKNHNIGDIIKVRITDVKISTLYGE 466
             G  +G+   ++P +   VL   +   +G+ +   + D +   L  E
Sbjct: 420 EPGVFEGRAEHQAPEVDGTVLVRGRGLAVGEFVTATVVDCEGVDLVAE 467


>gi|239928569|ref|ZP_04685522.1| hypothetical protein SghaA1_10118 [Streptomyces ghanaensis ATCC
           14672]
          Length = 464

 Score =  147 bits (371), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 123/409 (30%), Positives = 185/409 (45%), Gaps = 39/409 (9%)

Query: 50  SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVA-GC 108
           + G+  V    +AD+ V+NTC   E A +     L     L+ + +KE G    VVA GC
Sbjct: 3   ADGWRLVEDAAEADVAVVNTCGFVEAAKKDSVDAL-----LEANDLKEHGRTQAVVAVGC 57

Query: 109 VAQAEGEEILRRSPIVNVVVGPQTYY----RLPELL----------------------ER 142
           +A+  G+E+    P  + V+G   Y     RL  +L                      ER
Sbjct: 58  MAERYGKELAEALPEADGVLGFDDYTDISDRLQTILSGGIHASHTPRDRRKLLPLSPVER 117

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYN--RKR---GVTAFLTIQEGCDKFCTFCVVPY 197
              G  V    +   D  E L+   G     R+R      A + +  GCD+ C+FC +P 
Sbjct: 118 QAAGASVALPGHGPADLPEGLAPASGPRAPLRRRLDGSPVASVKLASGCDRRCSFCAIPS 177

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257
            RG  ISR  S V++E R L + GV EI L+ +N N   GK L G+      LL  L+E+
Sbjct: 178 FRGSFISRRPSDVLNETRWLAEQGVKEIMLVSEN-NTSYGKDL-GDIRLLESLLPELAEV 235

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
            GL R+R +   P +M   LI        + PY  L  Q  +  +L++M R      + +
Sbjct: 236 DGLERVRVSYLQPAEMRPGLIDVLTSTPKVAPYFDLSFQHSAPGVLRAMRRFGDTDRFLE 295

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
           ++D IRS  P   + S+FIVGFPGE++ D       ++         F YS   GT  + 
Sbjct: 296 LLDTIRSRAPQAGVRSNFIVGFPGESEADLAELERFLNHARLDAIGVFGYSDEEGTEAAT 355

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG 426
              +++E+V AERL  + +   E      D  VG+ + VL+E   +E+G
Sbjct: 356 YDTKLEEDVVAERLARVSRLAEELVSQRADERVGETVHVLVESVDEEEG 404


>gi|218262360|ref|ZP_03476857.1| hypothetical protein PRABACTJOHN_02531 [Parabacteroides johnsonii
           DSM 18315]
 gi|218223426|gb|EEC96076.1| hypothetical protein PRABACTJOHN_02531 [Parabacteroides johnsonii
           DSM 18315]
          Length = 244

 Score =  147 bits (371), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 74/212 (34%), Positives = 130/212 (61%), Gaps = 10/212 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F+++YGCQMNV DS  +  +    GY   + ++DAD I +NTC +R+ A +K+Y  L
Sbjct: 19  KKLFIETYGCQMNVADSEVVASIMKMDGYAVTDKIEDADAIFVNTCSVRDNAEQKIYGRL 78

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
              ++LK  +      L++ V GC+A+   EE++      ++VVGP +Y  LP L+    
Sbjct: 79  QYFQSLKRKK----KTLVIGVLGCMAERVKEELIEVHH-ADLVVGPDSYMDLPNLVGAVE 133

Query: 145 FGKRVVDTDYSVEDKFER-LSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            G++ ++ + S ++ ++  + +  GG +    ++ F++I  GC+ FCT+C+VPYTRG E 
Sbjct: 134 HGEKAINVELSTQETYKDVIPLKLGGVH----ISGFVSIMRGCNNFCTYCIVPYTRGRER 189

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAW 235
           SR +  +++E R + + G  E+TLLGQNVN++
Sbjct: 190 SRDIESILNEIRDMREKGFKEVTLLGQNVNSY 221


>gi|291448192|ref|ZP_06587582.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
           15998]
 gi|291351139|gb|EFE78043.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
           15998]
          Length = 493

 Score =  147 bits (371), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 129/455 (28%), Positives = 201/455 (44%), Gaps = 56/455 (12%)

Query: 23  VPQRFFVK--SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKV 80
           +P+R  V   + GC  N  DS  +     + G++ V    DAD+ V+NTC   E A +  
Sbjct: 1   MPERRTVALVTLGCARNEVDSEELAGRLAADGWDLVEDASDADVAVVNTCGFVEAAKKDS 60

Query: 81  YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140
              L    +LK+     G    VV  GC+A+  G+++    P  + V+G   Y  + + L
Sbjct: 61  VDALLEANDLKD----HGRTQAVVAVGCMAERYGKDLAEALPEADGVLGFDDYADISDRL 116

Query: 141 ER-------------------------------ARFGKRVVDTDYSVEDKFERLSIVDGG 169
           +                                A  G        + ED  E ++ V G 
Sbjct: 117 QTILNGGIHASHTPRDRRKLLPISPAERQDAAVALPGHAQETPAPAPEDLPEGVAPVSGP 176

Query: 170 ---YNRKRGVT--AFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCE 224
                R+ G +  A + +  GCD+ C+FC +P  RG  ISR  S V+ E R L + GV E
Sbjct: 177 RAPLRRRLGTSPVASVKLASGCDRRCSFCAIPSFRGSFISRRPSDVLQETRWLAEQGVKE 236

Query: 225 ITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL 284
           + L+ +N N   GK L G+      LL  L+++ G+ R+R +   P +M   LI      
Sbjct: 237 VMLVSEN-NTSYGKDL-GDIRLLETLLPELADVDGIERIRVSYLQPAEMRPGLIDVLTST 294

Query: 285 DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETD 344
             + PY  L  Q  S  +L++M R      + +++D IRS  P     S+FIVGFPGET+
Sbjct: 295 PKVAPYFDLSFQHSSPSVLRTMRRFGDTDRFLELLDTIRSKAPQAGARSNFIVGFPGETE 354

Query: 345 DDFRA-----TMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLR 399
            D        T   +D IG      F YS   GT       ++D +V AERL  + +   
Sbjct: 355 ADLAELERFLTGARLDAIGV-----FGYSDEEGTEAVGYENKLDADVIAERLAHISQLAE 409

Query: 400 EQQVSFNDACVGQIIEVLIEK-HGKEKGKL-VGRS 432
           E      +  VG+ ++VL+E    ++ G++ +GR+
Sbjct: 410 ELTSQRAEERVGETLQVLVESVESEDDGEVAIGRA 444


>gi|84499563|ref|ZP_00997851.1| RNA modification enzyme, MiaB-family protein [Oceanicola batsensis
           HTCC2597]
 gi|84392707|gb|EAQ04918.1| RNA modification enzyme, MiaB-family protein [Oceanicola batsensis
           HTCC2597]
          Length = 463

 Score =  147 bits (371), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 123/453 (27%), Positives = 201/453 (44%), Gaps = 45/453 (9%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC   + DS R+     ++GY        AD +++NTC   + A  +    +G   N 
Sbjct: 33  SLGCPKALVDSERILTRLRAEGYAISADYAGADAVIVNTCGFLDSAKAESLDAIGEALN- 91

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
           +N R        V+V GC+  AE E I    P V  V GP  Y ++ +++  A       
Sbjct: 92  ENGR--------VIVTGCLG-AEPEFITGAHPKVLAVTGPHQYEQVLDVVHGAV------ 136

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
                  D F  L    G     R  + +L I EGC+  C FC++P  RG   SR    V
Sbjct: 137 ---PPAPDPFIDLLPASGVTLTPRHYS-YLKIAEGCNHKCRFCIIPDMRGRLASRPAHAV 192

Query: 211 VDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGE-KCTFSDLLYSLSEIK 258
           + EA KL++ GV E+ ++ Q+ +A           W+G    GE +   +DL   L  + 
Sbjct: 193 LREAEKLVEAGVRELLVISQDTSAYGVDRRHDLSPWKG----GEVRSHITDLARELGGLG 248

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
             VRL Y   +P       + A G +   +PYL +P Q      L+ M R   A      
Sbjct: 249 AWVRLHYIYPYPHVRELIPLMAEGRV---LPYLDIPFQHAHPDTLRRMARPAAAERTLDR 305

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           I   RS+ P I + S FIVG+PGET+++F   ++ +D+    +   FKY    G   +++
Sbjct: 306 IAEWRSICPGITLRSTFIVGYPGETEEEFSTLLEWMDEAQLDRVGCFKYENVAGARSNDL 365

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVL---IEKHGKEKGKLVGRSPWL 435
            + V + VK ER     +K +    +   A VG + +V+   I++ G    + +  +P +
Sbjct: 366 PDHVPDTVKQERWERFMEKAQAISAAKLAAKVGTVQQVIVDEIDEDGIATCRTMADAPEI 425

Query: 436 QSVVL---NSKNHNIGDIIKVRITDVKISTLYG 465
              +    +++    GDI++V + +     L+G
Sbjct: 426 DGNLFLDEDTEGLAPGDILEVEVDEASEYDLWG 458


>gi|116331689|ref|YP_801407.1| 2-methylthioadenine synthetase [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
 gi|122280568|sp|Q04R21|RIMO_LEPBJ RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|116125378|gb|ABJ76649.1| 2-methylthioadenine synthetase [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
          Length = 439

 Score =  147 bits (371), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 93/367 (25%), Positives = 176/367 (47%), Gaps = 12/367 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++F++ + GC  N  DS+ M      +G+      +++D   +NTC   + A E+    +
Sbjct: 3   KKFYITTLGCPKNTADSMSMHHSLLEEGFTPATFAEESDFHFINTCTFIQSATEETIQTI 62

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
                L  +++K+     +VV GC A+   + I    P V++  G   Y +  ++L R +
Sbjct: 63  -----LSAAQVKKQNHQKLVVVGCFAERYPDNISSEIPEVDLFFGTGRYAQAGKIL-REK 116

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
           F           +   E+L +     N  +   A++ + +GC++ C+FC++P  RG    
Sbjct: 117 FPDLSPPKREFNDSLLEKLKLSSEIENYSKPY-AYVKVSDGCNRGCSFCIIPSFRGKFRE 175

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
             +  ++ +  + I  G  EI L+ Q+   +   G + E     D++  ++EI  L  LR
Sbjct: 176 SPVEDILRDVDRAIRAGAKEICLVSQDTVYY---GRNSE--VLLDMVRKVAEIDSLEVLR 230

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
               +P   ++ L++  G+   + PYL  P+Q  S +ILKSMNR   +  ++ +    R 
Sbjct: 231 LLYLYPDKKTEKLLRLMGETPKIAPYLESPLQHVSSKILKSMNRVGESSTFKDLFALARE 290

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           V+P + I + FI+G+PGE   D    +  +++    +   F YSP+ GT G+ + + V E
Sbjct: 291 VKPGLEIRTSFIIGYPGEEPGDVDQVLRFIEETRPEKVNLFSYSPQEGTKGAELKQTVSE 350

Query: 385 NVKAERL 391
             K+ R+
Sbjct: 351 KEKSRRI 357


>gi|124266807|ref|YP_001020811.1| ribosomal protein S12 methylthiotransferase [Methylibium
           petroleiphilum PM1]
 gi|238066612|sp|A2SG87|RIMO_METPP RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|124259582|gb|ABM94576.1| conserved hypothetical protein [Methylibium petroleiphilum PM1]
          Length = 471

 Score =  147 bits (371), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 138/488 (28%), Positives = 214/488 (43%), Gaps = 84/488 (17%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           +P+  FV S GC   + DS  +     ++GY+   S   ADL+++NTC   + A ++   
Sbjct: 22  IPKIGFV-SLGCPKALTDSELILTQLRAEGYDTSKSFAGADLVIVNTCGFIDDAVKESLD 80

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGE---EILRR-SPIVNVVVGPQTYYRLPE 138
            +G     +N R        V+V GC+    GE    ++R+  P V  V GP        
Sbjct: 81  TIGEALA-ENGR--------VIVTGCLGAKAGEGGGNLVRQMHPSVLAVTGPHAT----- 126

Query: 139 LLERARFGKRVVDTDY----SVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCV 194
                   + V+D  +       D F  L    G     R   A+L I EGC+  C+FC+
Sbjct: 127 --------QEVMDAVHVHVPKPHDPFVDLVPAYGVKLTPRHY-AYLKISEGCNHRCSFCI 177

Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGE 243
           +P  RG  +SR +  V++EAR L ++GV E+ ++ Q+ +A           W GK +   
Sbjct: 178 IPSMRGDLVSRPIGDVLNEARALFESGVKELLVISQDTSAYGVDVKYRTGFWDGKPV--- 234

Query: 244 KCTFSDLLYSLSEIK----GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
           K   +DL+  L E+       VRL Y   +P       + A G +   +PYL +P Q   
Sbjct: 235 KTRMTDLVERLGELAEPFGAWVRLHYVYPYPHVDEILPMMAGGRV---LPYLDVPFQHAH 291

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
             +LK M R     +  + + R R   P I + S FI GFPGET+ +F   +D + +   
Sbjct: 292 PDVLKRMKRPANGEKNLERLQRWREACPQIVVRSTFIAGFPGETEAEFEHLLDFMREARI 351

Query: 360 AQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCL--------QKKLREQQVSFNDACVG 411
            +A  F YSP  G   + +   + E V+ ER             +KLRE+        VG
Sbjct: 352 DRAGCFAYSPVEGASANALAGALPEAVREERRARFMAVAEAVSAEKLRER--------VG 403

Query: 412 QIIEVLIEKH---GKEKGKLVGRS----PWLQSVVL------NSKNHNIGDIIKVRITDV 458
             ++VLI+     GK+ G+  GRS    P +  VV        SK   +G+  + RI   
Sbjct: 404 AEMQVLIDAAPALGKKGGR--GRSYADAPEIDGVVHLLPPQKASKQLRVGEFTRARIVGT 461

Query: 459 KISTLYGE 466
           +   L G+
Sbjct: 462 QGHDLVGQ 469


>gi|34535972|dbj|BAC87494.1| unnamed protein product [Homo sapiens]
          Length = 487

 Score =  147 bits (370), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 117/403 (29%), Positives = 191/403 (47%), Gaps = 49/403 (12%)

Query: 53  YERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQA 112
           ++   +  DADL +LN+C ++  A +    F   I+  +    K      +V+AGCV QA
Sbjct: 22  HQVTENASDADLWLLNSCTVKNPAEDH---FRNSIKKAQEENKK------IVLAGCVPQA 72

Query: 113 EGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERL--SIVDGGY 170
           +  +   +      ++G Q   R+ E++E    G  V       +D   RL  + +D   
Sbjct: 73  QPRQDYLKG---LSIIGVQQIDRVVEVVEETIKGHSVRLLGQK-KDNGRRLGGARLDLPK 128

Query: 171 NRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQ 230
            RK  +   ++I  GC   CT+C   + RG   S  + ++VD A++    GVCEI L  +
Sbjct: 129 IRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELVDRAKQSFQEGVCEIWLTSE 188

Query: 231 NVNAWRGKGLDGEKCTFSDLLYSLSEI--------KGLVRLRYTTSHPRDMSDCLIKAHG 282
           +  A+ G+ +         LL+ L E+         G+    Y   H  +M+  L     
Sbjct: 189 DTGAY-GRDIG---TNLPTLLWKLVEVIPEGAMLRLGMTNPPYILEHLEEMAKIL----- 239

Query: 283 DLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGE 342
           +   +  +LH+PVQS SD +L  M R +   ++++++D ++   P I I++D I GFPGE
Sbjct: 240 NHPRVYAFLHIPVQSASDSVLMEMKREYCVADFKRVVDFLKEKVPGITIATDIICGFPGE 299

Query: 343 TDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCL-------- 394
           TD DF+ T+ LV++  +   F  ++ PR GTP + M EQV   V  ER   L        
Sbjct: 300 TDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKM-EQVPAQVIGERQQVLVTEESFDS 358

Query: 395 -----QKKLREQ-QVSFNDACVGQIIEVLIEKHGKE--KGKLV 429
                  +  EQ  V  N A +G+++EV I + GK   KG+ V
Sbjct: 359 KFYVAHNQFYEQVLVPKNPAFMGKMVEVDIYESGKHFMKGQPV 401


>gi|261879550|ref|ZP_06005977.1| MiaB family RNA modification enzyme [Prevotella bergensis DSM
           17361]
 gi|270333776|gb|EFA44562.1| MiaB family RNA modification enzyme [Prevotella bergensis DSM
           17361]
          Length = 443

 Score =  147 bits (370), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 123/449 (27%), Positives = 212/449 (47%), Gaps = 29/449 (6%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEKVYSFLGRIR 88
           + GC  N+ D+  +   F + GY  V+       ++ V+NTC   + A E+  + +    
Sbjct: 10  TMGCSKNLVDTEHLMRQFENLGYRCVHDPQRVQGEIAVVNTCGFIDAAKEESINTILEFA 69

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
             KN    EG    + V GC++Q   +E+ +  P V+   G    +   +LL+     + 
Sbjct: 70  EAKN----EGRLKRLYVMGCLSQRYQDELEKTIPEVDRFYGK---FNFKQLLQDLGPSED 122

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVT---AFLTIQEGCDKFCTFCVVPYTRGIEISR 205
             D+D     + + LS       RK       A++ I EGCD+ C +C +P   G   SR
Sbjct: 123 PKDSDALFTQRRKELSA-----GRKLTTPRHYAYIKIAEGCDRHCAYCAIPLMTGRHTSR 177

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           S+  +++E ++L+  GV E  ++ Q +  + G  +DG K   ++L+  +++I G+  +R 
Sbjct: 178 SMEDILEEVKQLVAEGVKEFQIIEQELTYY-GVDIDG-KPRIAELISRMADIPGVKWIRL 235

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
             ++P      L+    +   +  YL + +Q  SD +L  M R  +  E  ++I +IR  
Sbjct: 236 HYAYPNQFPLELLDVMREKPNVCKYLDIALQHISDHVLSRMLRHVSKAETLELIRKIRQE 295

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE-QVDE 384
            P I + +  +VGFPGET++DF+  +D V ++ + +  +F YS   GT  +   E  V  
Sbjct: 296 VPGITLRTTLMVGFPGETEEDFQELLDFVREVRFERMGAFVYSEEEGTYSALHYEDDVPA 355

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVVL 440
            VK  RL  L    ++       A +G+  +V+I++  KE    VGR    SP +   VL
Sbjct: 356 EVKQRRLDELMAVQQDISAEIQAAKIGKTFKVIIDR--KEGNYYVGRTEASSPEVDPEVL 413

Query: 441 ---NSKNHNIGDIIKVRITDVKISTLYGE 466
                +N   G   +V+ITD     LYGE
Sbjct: 414 IPVGKRNLRTGCFYEVKITDSDEFDLYGE 442


>gi|76802239|ref|YP_327247.1| hypothetical protein NP3198A [Natronomonas pharaonis DSM 2160]
 gi|76558104|emb|CAI49690.1| conserved hypothetical protein [Natronomonas pharaonis DSM 2160]
          Length = 414

 Score =  147 bits (370), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 117/454 (25%), Positives = 208/454 (45%), Gaps = 55/454 (12%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           + +++YGC  N  +S ++E      G+ RV++ + AD+ +LNTC + EK      + L R
Sbjct: 4   YHIETYGCTSNRGESRQIERKLRDAGHYRVDTPEKADVAILNTCTVVEKTER---NMLRR 60

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEE-------ILRRSPIVNVVVGPQTYYRLPEL 139
              L+     E  DL  +V GC+A A+G+E       +L    +   V   +     P+ 
Sbjct: 61  AEELE----AETADL--IVTGCMALAQGDEFGDIDAQVLHWEDVPTAVTNGECPTTTPD- 113

Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
                  + V+D                       GV   L I  GC   C++C+  +  
Sbjct: 114 ------AEPVLD-----------------------GVVGILPIARGCMSNCSYCITKFAT 144

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G   S  +++ V++AR L+  G  E+ + GQ+   +   G D  +    +LL  + +I G
Sbjct: 145 GRVDSPPVAENVEKARALVHAGAKELRITGQDTGVY---GWDTGERKLPELLDRICDIDG 201

Query: 260 LVRLRYTTSHP---RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
             R+R   ++P     + + L     + + L  ++H PVQSGSD +L+ M R+H   +++
Sbjct: 202 EFRVRLGMANPGGVHGIHEELADVFAENEKLYNFIHAPVQSGSDDVLEDMRRQHRVEKFK 261

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
            I+D          +S+DFIVGFP E + D   +M+L+ ++   +    ++S R GT  +
Sbjct: 262 DIVDAFDERLDHWTLSTDFIVGFPTEDEADHELSMELLAEVRPEKINVTRFSKRPGTDAA 321

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQ 436
           +M + +   +K ER   +     +       + VG+  EVL+ + G           + Q
Sbjct: 322 DM-KGLGGTIKKERSKAMTDLKMDICREVYGSMVGETREVLVVEQGTGDSVKCRDEAYRQ 380

Query: 437 SVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468
            +V ++  H+I  GD++ V ITD +    +GE V
Sbjct: 381 VIVTDATEHDIDPGDMLDVTITDSETVYCFGEPV 414


>gi|114605656|ref|XP_001171067.1| PREDICTED: hypothetical protein isoform 1 [Pan troglodytes]
          Length = 488

 Score =  147 bits (370), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 117/403 (29%), Positives = 191/403 (47%), Gaps = 49/403 (12%)

Query: 53  YERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQA 112
           ++   +  DADL +LN+C ++  A +    F   I+  +    K      +V+AGCV QA
Sbjct: 22  HQVTENASDADLWLLNSCTVKNPAED---HFRNSIKKAQEENKK------IVLAGCVPQA 72

Query: 113 EGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERL--SIVDGGY 170
           +  +   +      ++G Q   R+ E++E    G  V       +D   RL  + +D   
Sbjct: 73  QPRQDYLKG---LSIIGVQQIDRVVEVVEETIKGHSVRLLGQK-KDNGRRLGGARLDLPK 128

Query: 171 NRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQ 230
            RK  +   ++I  GC   CT+C   + RG   S  + ++VD A++    GVCEI L  +
Sbjct: 129 IRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELVDRAKQSFQEGVCEIWLTSE 188

Query: 231 NVNAWRGKGLDGEKCTFSDLLYSLSEI--------KGLVRLRYTTSHPRDMSDCLIKAHG 282
           +  A+ G+ +         LL+ L E+         G+    Y   H  +M+  L     
Sbjct: 189 DTGAY-GRDIG---TNLPTLLWKLVEVIPEGAMLRLGMTNPPYILEHLEEMAKIL----- 239

Query: 283 DLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGE 342
           +   +  +LH+PVQS SD +L  M R +   ++++++D ++   P I I++D I GFPGE
Sbjct: 240 NHPRVYAFLHIPVQSASDSVLMEMKREYCVADFKRVVDFLKEKVPGITIATDIICGFPGE 299

Query: 343 TDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCL-------- 394
           TD DF+ T+ LV++  +   F  ++ PR GTP + M EQV   V  ER   L        
Sbjct: 300 TDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKM-EQVPAQVIGERQQVLVTEESFDS 358

Query: 395 -----QKKLREQ-QVSFNDACVGQIIEVLIEKHGKE--KGKLV 429
                  +  EQ  V  N A +G+++EV I + GK   KG+ V
Sbjct: 359 KFYVAHNQFYEQVLVPKNPAFMGKMVEVDIYESGKHFMKGQPV 401


>gi|260592452|ref|ZP_05857910.1| RNA modification enzyme, MiaB-family [Prevotella veroralis F0319]
 gi|260535498|gb|EEX18115.1| RNA modification enzyme, MiaB-family [Prevotella veroralis F0319]
          Length = 433

 Score =  147 bits (370), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 121/459 (26%), Positives = 210/459 (45%), Gaps = 57/459 (12%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEK----VYSFL 84
           + GC  N+ DS  +  +F   GY   +       ++ V+NTC   E A E+    +  F+
Sbjct: 10  TMGCSKNLVDSEIIMKLFEENGYHCTHDAKRPQGEIAVINTCGFIEAAKEESINTILEFI 69

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R +N + +R+         V GC++Q   +E+    P V+   G   Y +L   L +A 
Sbjct: 70  NRKKNGQLNRL--------YVMGCLSQRYKDELEAELPEVDKFYGKFNYKQLLTDLGKAS 121

Query: 145 F----GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
                G R + T                         A++ I EGCD+ C +C +P   G
Sbjct: 122 IPSCNGTRHLTTPRHY---------------------AYIKIAEGCDRHCAYCAIPLITG 160

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
              SR + ++++E + L+  GV E  ++ Q +  + G  LDG K   ++L+  +++IKG+
Sbjct: 161 RHHSRPIDEILNEVKDLVVQGVKEFQIIEQELTYY-GVDLDG-KHHITELISRMADIKGV 218

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
             +R   ++P      L+      D +  YL +  Q  SD +L  M+R  T  E   +I 
Sbjct: 219 KWIRLHYAYPNQFPLDLLDVIAKKDNVCKYLDIAFQHISDNMLTRMHRHVTKQETLDLIR 278

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT-PGSNML 379
            IR   P I + +  +VGFPGET++DF    + V +  + +  +F YS   GT   ++  
Sbjct: 279 EIRCRVPGIHLRTTLLVGFPGETEEDFEELKEFVTEARFERMGAFAYSEEEGTYSATHYK 338

Query: 380 EQVDENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQ 436
           + V E VK  R   L+ +Q+ + E+        VG++ +V+I++  KE    +GR+ +  
Sbjct: 339 DDVPEEVKQSRLDELMAIQQGISEE---LEAEKVGKVFKVIIDR--KEGEYYIGRTEYCS 393

Query: 437 S-------VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
                   ++++ K   IG+   VRIT      L+GE+ 
Sbjct: 394 PEVDPEVLILVSEKQLRIGNFYNVRITGSDEFDLFGEIA 432


>gi|110598860|ref|ZP_01387113.1| conserved hypothetical protein [Chlorobium ferrooxidans DSM 13031]
 gi|110339521|gb|EAT58043.1| conserved hypothetical protein [Chlorobium ferrooxidans DSM 13031]
          Length = 433

 Score =  147 bits (370), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 127/450 (28%), Positives = 212/450 (47%), Gaps = 37/450 (8%)

Query: 28  FVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEK-VYSFLGR 86
           F+ S GC  N  DS R+     + G     + D+AD I++NTC   E A E+ +   L  
Sbjct: 9   FLLSLGCSKNTVDSERLMAQAEASGITFTETADEADTILINTCAFIEDAKEESIAETLAA 68

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           I      +  EG    V + GC+ +   +E+      V+   G +    LPE+L  A  G
Sbjct: 69  I-----GKKTEGKVQRVYMMGCLTELYRKELHEEMEEVDGFFGTR---ELPEVL--AALG 118

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
                     E+ ++R S++   +       A+L I EGC++ C+FC +P  RG  IS+ 
Sbjct: 119 A------VYREEFYDRRSLLTPPH------YAYLKIAEGCNRACSFCSIPKIRGRYISQP 166

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK-GLVRLRY 265
             Q++ EA  L   GV E+ ++ Q+++ + G  L+G K   +DL+  LS+++   +RL Y
Sbjct: 167 PEQLLREAALLKSAGVRELNVIAQDISLY-GYDLEG-KSLLNDLVLRLSDMEFDWIRLFY 224

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
             ++P      +I    +   +  YL +P+Q G+DRIL+SMNR     E  ++I+ IR  
Sbjct: 225 --AYPVGFPLEVIDTMHERANICNYLDIPLQHGNDRILRSMNRGINKAETIKLIETIREK 282

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            PDI + +  I G+PGET ++F   +  V++  + +   F Y      P   + E +   
Sbjct: 283 NPDIRLRTTMIAGYPGETREEFEELLQFVEESRFDRLGCFPYCHEEHAPSFKLEESLTME 342

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV------ 439
            K ER+  L +         N    G+ I+VLI++   E    +GR+ +    V      
Sbjct: 343 EKRERVAELMELQESISAENNRVFEGKTIKVLIDQ--IEADTALGRTEYDAPEVDNECIL 400

Query: 440 -LNSKNHNIGDIIKVRITDVKISTLYGELV 468
            LN++   +G      ITD     L+G ++
Sbjct: 401 DLNNQPVTVGSFCMAEITDSGAYELHGRVI 430


>gi|330836973|ref|YP_004411614.1| MiaB-like tRNA modifying enzyme [Spirochaeta coccoides DSM 17374]
 gi|329748876|gb|AEC02232.1| MiaB-like tRNA modifying enzyme [Spirochaeta coccoides DSM 17374]
          Length = 453

 Score =  147 bits (370), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 130/461 (28%), Positives = 210/461 (45%), Gaps = 61/461 (13%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V + GC++N  +   +   F ++G + V     ADL V+NTC +  KA +K        R
Sbjct: 5   VYTLGCRLNQTEGEAIAQAFAAEGCDVVQDDMSADLYVVNTCTVTSKAEQKA-------R 57

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGP----QTYYRLPELL-ERA 143
            +      E    +VVV GC AQ +G +I   +    +VV P         LP  +  R 
Sbjct: 58  RMIRKYASEPHAPVVVVTGCYAQMDGTDIAALA--ARIVVFPLDKKAALLALPRFMTPRI 115

Query: 144 RFGKRVVDT--DYS--VEDKFERLSIVDGGYNRKRGV------------TAFLTIQEGCD 187
             G   +D   +++  V  +   L    GG  ++  V             A+L +Q+GCD
Sbjct: 116 HSGDSPLDICREFAELVPAQLAALHAKSGGEGKEPSVFDYAPDTFLHNQRAYLKVQDGCD 175

Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVN--AWRGKGLDG--E 243
             C FC V   RG  +  +  +VV     L   G  E+ L G N+    ++G+GL    E
Sbjct: 176 NACAFCRVHVARGKAVDLNADEVVRRVMHLERQGFHEVVLTGVNLTMYGYKGEGLGALVE 235

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
           K         L  I   +R+R ++  P  +   L+    D   + PY H+PVQS + ++L
Sbjct: 236 KI--------LEHIGSDMRIRLSSLEPDHVDGRLLDTLHD-PRMQPYFHIPVQSANQKVL 286

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
             +NR ++      +IDR+R ++ D  I++D I G P E D +F+ T D +   G+A+  
Sbjct: 287 YRINRHYSVEHLAWVIDRLRDIKDDPCIAADIIAGLPAEYDAEFQETYDFLKNKGFARLH 346

Query: 364 SFKYSPRLGTPGSNMLEQVDENVKAERL-------LCLQKKLREQQVSFNDACVGQIIEV 416
            F +SPR  TP     ++V E+V+ ER         CL K+   +Q        G+  EV
Sbjct: 347 VFPFSPRPDTPLYQARDRVPESVRDERAARLRELSACLLKEYSARQ-------EGREAEV 399

Query: 417 LIEKHGKEKGKLVGRS-PWLQSVVLNS-KNHNIGDIIKVRI 455
           ++E+  K+ G   G +  +L++ V  S ++   GD+ KV I
Sbjct: 400 ILEQ--KKDGWWNGLTGNYLRARVEGSPQDARPGDLFKVVI 438


>gi|222480620|ref|YP_002566857.1| MiaB-like tRNA modifying enzyme [Halorubrum lacusprofundi ATCC
           49239]
 gi|222453522|gb|ACM57787.1| MiaB-like tRNA modifying enzyme [Halorubrum lacusprofundi ATCC
           49239]
          Length = 434

 Score =  147 bits (370), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 115/454 (25%), Positives = 206/454 (45%), Gaps = 57/454 (12%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           + +++YGC  N  +S  +E      G+   +  +DAD+ +LNTC + EK      + L R
Sbjct: 4   YHIETYGCSSNRGESREIERALRDGGHRPADGPEDADVAILNTCTVVEKTER---NMLRR 60

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGE---------EILRRSPIVNVVVGPQTYYRLP 137
              L++   +      +VV GC+A A+G+         EIL    + + V+  +     P
Sbjct: 61  AEELEDVTAE------LVVTGCMALAQGDAFREAGVDAEILHWDEVPSHVLNGECPTVTP 114

Query: 138 ELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197
           +        + V+D                       GV   L I  GC   C++C+  +
Sbjct: 115 D-------AEPVLD-----------------------GVVGILPIARGCMSNCSYCITKF 144

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257
             G   S ++ + V++AR L+  G  EI + GQ+   +   G D       +LL  + +I
Sbjct: 145 ATGRVDSPTVEENVEKARALVHAGAKEIRVTGQDTGVY---GWDNGDRKLPELLDRICDI 201

Query: 258 KGLVRLRYTTSHP---RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
            G  R+R   ++P     + + L +   D + L  ++H PVQSGSD +L+ M R+H   +
Sbjct: 202 DGDFRVRLGMANPGGIHGIHEELAEVFADNEELYDFIHAPVQSGSDDVLEDMRRQHRVEK 261

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
           +R++++          +S+DFIVGFP ET+ D   +MDL+ ++   +    ++S R GT 
Sbjct: 262 FREVVETFDDRLDHWTLSTDFIVGFPTETEADHERSMDLLAEVRPEKINVTRFSKRPGTD 321

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPW 434
            ++M + +   +K ER   + +   E      ++ VG+  EVL+ + G           +
Sbjct: 322 AADM-KGLGGTIKKERSKAMSELKMEVVGDAYESMVGETFEVLVVEEGTGDSVKCRDGAY 380

Query: 435 LQSVVLNSKNHN--IGDIIKVRITDVKISTLYGE 466
            Q +V N+      +GD ++V +T       +GE
Sbjct: 381 RQIIVQNAAERGVAVGDFLEVEVTGHNTVYAFGE 414


>gi|217978009|ref|YP_002362156.1| MiaB-like tRNA modifying enzyme [Methylocella silvestris BL2]
 gi|217503385|gb|ACK50794.1| MiaB-like tRNA modifying enzyme [Methylocella silvestris BL2]
          Length = 433

 Score =  147 bits (370), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 114/405 (28%), Positives = 179/405 (44%), Gaps = 49/405 (12%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V S+GC++N+ +S  M       G E        +LI++NTC +  +A  +         
Sbjct: 12  VASFGCRLNLVESEAMRRAAEKAGRE--------NLIIVNTCAVTAEATRQARQ------ 57

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
                  +E     ++V GC A+                + P ++ ++PE+        +
Sbjct: 58  -AIRRIRRERPSAEIIVTGCAAE----------------IDPGSFSQMPEVSRVLGNAGK 100

Query: 149 VVDTDYSVEDKFERLSIVD--GGYN-RKRGVT----AFLTIQEGCDKFCTFCVVPYTRGI 201
                ++  +  E  SI++  G  N    GV     AFL +Q GCD  CTFC++P+ RG 
Sbjct: 101 SDAAAWASAEPVEAQSIMNAAGPLNIPAEGVEDHTRAFLAVQTGCDHRCTFCIIPFARGP 160

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS-LSEIKGL 260
             S     ++   R+L D G  EI L G ++ ++   G D        L+ + L     L
Sbjct: 161 SRSSPAEAILASVRRLTDQGFREIVLTGVDLTSY---GQDLGDIRLGGLVKAILKAAPEL 217

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            RLR ++    +    L  A  +   L P+LHL +Q+G D ILK M RRH   +  ++  
Sbjct: 218 ERLRLSSIDCIEADADLFSAFAEEPRLAPHLHLSLQAGDDMILKRMKRRHLRADAVRLCA 277

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
            ++ +RPDI   +D I GFP ET+  F  T  L++  G A    F +SPR GTP + M  
Sbjct: 278 ELKRLRPDIVFGADLIAGFPTETEAMFENTASLIEDCGLAYLHVFPFSPRPGTPAAKMPA 337

Query: 381 QVDENVK--AERL-LCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422
                VK  A RL L  +  L     +     +G+ + VL E+ G
Sbjct: 338 VAPTLVKQRAARLRLAGETALARHHATK----IGKTLRVLTERGG 378


>gi|320008186|gb|ADW03036.1| MiaB-like tRNA modifying enzyme YliG [Streptomyces flavogriseus
           ATCC 33331]
          Length = 492

 Score =  146 bits (369), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 129/454 (28%), Positives = 203/454 (44%), Gaps = 55/454 (12%)

Query: 23  VPQRFFVK--SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKV 80
           +P+R  V   + GC  N  DS  +     + G++ V +  DAD+ V+NTC   E A +  
Sbjct: 1   MPERRTVALVTLGCARNEVDSEELAGRLAADGWDLVENATDADVAVVNTCGFVEAAKKDS 60

Query: 81  YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG----------- 129
              L    +LK+     G    VV  GC+A+  G+++    P  + V+G           
Sbjct: 61  VDALLEANDLKD----HGRTQAVVAVGCMAERYGKDLAEALPEADGVLGFDDYADISDRL 116

Query: 130 -------------PQTYYRLPELLERARFGKRVVDTDYSVE------DKFERLSIVDGG- 169
                        P+   +L  +    R    V    ++ E      D  E ++ V G  
Sbjct: 117 QTILNGGIHASHTPRDRRKLLPISPAERQDAAVALPGHAQEITPAPADLPEGIAPVSGPR 176

Query: 170 --YNRKRGVTAFLTIQ--EGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEI 225
               R+ G +   +++   GCD+ C+FC +P  RG  +SR  S V+ E R L + GV E+
Sbjct: 177 APLRRRLGTSPVASVKLASGCDRRCSFCAIPSFRGSFVSRRPSDVLGETRWLAEQGVKEV 236

Query: 226 TLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLD 285
            L+ +N N   GK L G+      LL  L+++ G+ R+R +   P +M   LI       
Sbjct: 237 MLVSEN-NTSYGKDL-GDIRLLETLLPELADVDGIERIRVSYLQPAEMRPGLIDVLTSTP 294

Query: 286 VLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDD 345
            + PY  L  Q  + ++L+SM R      + +++D IRS  P     S+FIVGFPGET+ 
Sbjct: 295 KVAPYFDLSFQHSAPKVLRSMRRFGDTDRFLELLDTIRSKAPQAGARSNFIVGFPGETEA 354

Query: 346 DFRA-----TMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLRE 400
           D        T   +D IG      F YS   GT       ++D +V AERL  + +   E
Sbjct: 355 DVAELERFLTGARLDAIGV-----FGYSDEDGTEAVGYENKLDADVIAERLAHISQLAEE 409

Query: 401 QQVSFNDACVGQIIEVLIEK-HGKEKGKL-VGRS 432
                 +  VG+ ++VL+E    +E G + VGR+
Sbjct: 410 LTSQRAEERVGETLQVLVESVEDEEDGPVAVGRA 443


>gi|328885447|emb|CCA58686.1| Ribosomal protein S12p methylthiotransferase [Streptomyces
           venezuelae ATCC 10712]
          Length = 497

 Score =  146 bits (369), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 132/490 (26%), Positives = 210/490 (42%), Gaps = 64/490 (13%)

Query: 23  VPQRFFVK--SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKV 80
           +P+R  V   + GC  N  DS  +     + G+E V + +DAD+ V+NTC   E A +  
Sbjct: 1   MPERRTVALVTLGCARNEVDSEELAGRLAADGWELVENAEDADVAVVNTCGFVEAAKKDS 60

Query: 81  YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140
              L    +LK+     G    VV  GC+A+  G+E+    P  + V+G   Y  +   L
Sbjct: 61  VDALLEANDLKD----HGRTQAVVAVGCMAERYGKELAEALPEADGVLGFDDYSDISNRL 116

Query: 141 ERARFG----------KRVVDTDYSVEDKFERLSIVDGGYN------------------- 171
           +    G          +R +     VE +    ++   G+                    
Sbjct: 117 QTILSGGSVEAHTPRDRRKLLPLSPVERQEAAAAVALPGHGDAAEAPAEAPADLPEGIAP 176

Query: 172 --------RKR---GVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN 220
                   R+R      A + +  GCD+ C+FC +P  RG  +SR  S V++E R L + 
Sbjct: 177 ASGPRAPLRRRLDTSPVASVKLASGCDRRCSFCAIPSFRGSFVSRRPSDVLNETRWLAEQ 236

Query: 221 GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKA 280
           GV E+ L+ +N N   GK L G+      LL  L+ + G+ R+R +   P +M   LI  
Sbjct: 237 GVKEVMLVSEN-NTSYGKDL-GDIRLLESLLPELAAVDGIERVRVSYLQPAEMRPGLIDV 294

Query: 281 HGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFP 340
               + ++PY  L  Q  +  +L++M R      + +++  IR   P     S+FIVGFP
Sbjct: 295 LTSTEKVVPYFDLSFQHSAPDVLRAMRRFGDTDRFLELLASIREKAPTAGARSNFIVGFP 354

Query: 341 GETDDDFRA-----TMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQ 395
           GET+ DF       T   +D IG      F YS   GT  +    ++D+ V   RL  L 
Sbjct: 355 GETEADFAELERFITHARLDAIGV-----FGYSDEDGTEAAGYEHKLDQEVVDARLAHLS 409

Query: 396 KKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQS-----VVLNSKNHNIGDI 450
           +   E      +  +G+ +EVL+E    E G ++GR+          VVL +      D+
Sbjct: 410 RLAEELTAQRAEERIGETLEVLVESVDDEDG-VIGRAAHQAPETDGQVVLTTAGGASPDL 468

Query: 451 IKVRITDVKI 460
              R+   K+
Sbjct: 469 APGRMVVAKV 478


>gi|34540013|ref|NP_904492.1| hypothetical protein PG0150 [Porphyromonas gingivalis W83]
 gi|81417873|sp|Q7MXM3|RIMO_PORGI RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|34396324|gb|AAQ65391.1| conserved hypothetical protein TIGR01125 [Porphyromonas gingivalis
           W83]
          Length = 434

 Score =  146 bits (369), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 131/462 (28%), Positives = 211/462 (45%), Gaps = 52/462 (11%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDA----DLIVLNTC-HIREKAAEKV 80
           R  V + GC  N+ DS  +   F S GY      D A    +++V+NTC  I +   E V
Sbjct: 5   RVDVITLGCSKNLVDSEVLMRQFLSNGY--TVHHDPASVCGEIVVVNTCGFIGDAQEESV 62

Query: 81  YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140
            + L  +   K  RI   G L V+  GC+++   E++ +  P V+   G   + +L   L
Sbjct: 63  NTILEMVEAKKAGRI---GSLYVM--GCLSERFREDLKKEIPEVDAYYGKFDWKQLISHL 117

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT----AFLTIQEGCDKFCTFCVVP 196
            ++ + +                       NR++  T    A+L I EGCD+ C++C +P
Sbjct: 118 GKSYYAE---------------------AENRRKLTTPRHYAYLKISEGCDRSCSYCAIP 156

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT-FSDLLYSLS 255
              G   SR +  +V+E R L+ +G  E  L+ Q++  +   GLD       ++L   LS
Sbjct: 157 IITGRHRSRPMEDLVEEVRMLVKHGTREFQLIAQDLTFY---GLDLYGANRLAELTARLS 213

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
           +IKG+  LR   ++P      L+    +   +  YL + +Q  SD +L  M RR T  E 
Sbjct: 214 DIKGVEWLRLHYAYPAQFPLDLLPVMRERPNVCKYLDMALQHISDPMLGRMRRRITKAET 273

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP- 374
            ++I+RIR+  P I + +  + G PGET+ DF   +  V  I + +  +F YS   GT  
Sbjct: 274 YELIERIRTEVPGIHLRTTLMTGHPGETERDFEELLQFVRDIRFERLGAFTYSHESGTYC 333

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR--- 431
             N  + + E+VK ERL  L         + N+A +G  + V+I++   E G  VGR   
Sbjct: 334 DKNYQDDIPESVKQERLGELMAVQERISAAHNEAKIGSRLHVVIDR--AEDGFYVGRTEY 391

Query: 432 -SPWLQSVVL----NSKNHNIGDIIKVRITDVKISTLYGELV 468
            SP +   VL    + +  N G      +T  +   LY  +V
Sbjct: 392 DSPEVDPEVLIPFVSGQELNPGRFYMAEVTGAEPFDLYARIV 433


>gi|121610173|ref|YP_997980.1| ribosomal protein S12 methylthiotransferase [Verminephrobacter
           eiseniae EF01-2]
 gi|238055295|sp|A1WMV5|RIMO_VEREI RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|121554813|gb|ABM58962.1| MiaB-like tRNA modifying enzyme YliG [Verminephrobacter eiseniae
           EF01-2]
          Length = 462

 Score =  146 bits (369), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 134/475 (28%), Positives = 210/475 (44%), Gaps = 73/475 (15%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R  + S GC   + DS  +     ++GYE   +   ADL+++NTC   + A ++    +G
Sbjct: 11  RIGMVSLGCPKALTDSELILTQLSAEGYETSKTFQGADLVIVNTCGFIDDAVKESLDTIG 70

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQ---AEGEEILRR-SPIVNVVVGPQTYYRLPELLE 141
                    + E G   V+V GC+     A+G  ++R+  P V  V GPQ   ++ + + 
Sbjct: 71  EA-------LAENGK--VIVTGCLGARTGADGGNMVRQLHPSVLAVTGPQATQQVLDAVH 121

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT---------AFLTIQEGCDKFCTF 192
           R               D F  + +V GG     G+          A+L I EGC+  CTF
Sbjct: 122 R---------NLPKPHDPF--IDLVPGGM----GIAGLKLTPRHYAYLKISEGCNHRCTF 166

Query: 193 CVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLD 241
           C++P  RG  +SR +  V++EAR L   GV E+ ++ Q+ +A           W G+ L 
Sbjct: 167 CIIPTLRGALVSRPIGAVLNEARALFAGGVKELLVISQDSSAYGVDMQYRTGFWDGQPLK 226

Query: 242 GEKCTFSDLLYSLSEIKG-LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300
                    L +L+E  G  VRL Y   +P    D LI       VL PYL +P+Q    
Sbjct: 227 TRLLELVQALGALAEPYGAWVRLHYVYPYPS--VDALIPLMAQGRVL-PYLDVPLQHSHP 283

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
            +L+ M R  +     + I R R V P+I I S FIVGFPGET  +F   +D +      
Sbjct: 284 EVLRRMKRPASGERNLERIQRWREVCPEIVIRSSFIVGFPGETQAEFEHLLDFLRAARID 343

Query: 361 QAFSFKYSPRLGTPGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVL 417
           +   F YS   G   +++   +   ++ E   R + + + L   ++      VG  ++VL
Sbjct: 344 RVGCFAYSDVSGAVANDLPGMLPMPLRQERRARFMAVAEALSSAKLQRR---VGATMQVL 400

Query: 418 IEKH---GKEKGKLVGRS----PWLQSVVL------NSKNHNIGDIIKVRITDVK 459
           I+     G++ G  VGRS    P +   V        SK   +G+  + RI  V+
Sbjct: 401 IDAAPGLGRKGG--VGRSYADAPEIDGAVHLLPPEKISKTLKVGEFTQARIVGVR 453


>gi|158521760|ref|YP_001529630.1| MiaB-like tRNA modifying enzyme [Desulfococcus oleovorans Hxd3]
 gi|158510586|gb|ABW67553.1| MiaB-like tRNA modifying enzyme [Desulfococcus oleovorans Hxd3]
          Length = 451

 Score =  146 bits (369), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 127/443 (28%), Positives = 208/443 (46%), Gaps = 31/443 (6%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + F +K+ GC++N ++S  +     S+G+   ++   ADL ++NTC +  + A +     
Sbjct: 2   KSFIIKTLGCKVNQFESEAIAAALISEGWCLADAGGPADLCIVNTCTVTSRGAMQSRQ-- 59

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
                L     +E    +V+  GC A    EE L  +  V+ +V     YR+PE +    
Sbjct: 60  -----LLRRLRREHPFAMVLATGCHATLNAEE-LAATGAVDCIVYHCAKYRIPETVRSME 113

Query: 145 FG------KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
                    R+VD      D F RLS       R R   AFL IQ+GC+ FC +C+VP+ 
Sbjct: 114 DAFTPGGPVRIVDQGER-RDLFTRLSPAAVTGFRTR---AFLRIQDGCNAFCAYCIVPHA 169

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEI 257
           RG  +S +  +V+     L  +G  E+ L G ++  +   G D     +  +LL ++   
Sbjct: 170 RGPSVSMTPDRVMAALAALDADGRREVVLAGIHLGLY---GADLSPSVSLLELLTTVVRR 226

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
           + + RLR ++  P +++D L+      D++  + HLP+QSGS+ +L  M R +TA  Y  
Sbjct: 227 RLVSRLRLSSIEPCELTDDLLDLAAGTDMICDHFHLPLQSGSNDVLGRMGRPYTAEVYAD 286

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
            +  +R   P  AI +D +VGFPGET   F  T  LV+ +  +    F +S R GT  + 
Sbjct: 287 RVAAVRKRVPHAAIGADVLVGFPGETAALFEETFCLVETLPVSYLHVFPFSSRPGTRAAA 346

Query: 378 MLEQVDENVKAERLLCLQKKLR----EQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRS 432
           M    D  V AE +     +LR    E++  F      +++  L+E+    K G L   S
Sbjct: 347 M----DNPVPAEEIKSRCARLRNLGAEKKRIFCQNNYERMVPALVEETPDRKTGLLKAVS 402

Query: 433 PWLQSVVLNSKNHNIGDIIKVRI 455
               SV++       G ++ VRI
Sbjct: 403 TNYLSVLVKGPEALRGQLVNVRI 425


>gi|302528498|ref|ZP_07280840.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Streptomyces sp. AA4]
 gi|302437393|gb|EFL09209.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Streptomyces sp. AA4]
          Length = 485

 Score =  146 bits (369), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 128/472 (27%), Positives = 208/472 (44%), Gaps = 56/472 (11%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA-EKVYSF 83
           +R  + + GC  N  DS  +     + G+E     +D+D++V+NTC   E A  + V + 
Sbjct: 15  RRVSLVTLGCARNEVDSEELAGRLAAGGWELAAEPEDSDVVVVNTCGFVESAKKDSVDTL 74

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           L      +           VV  GC+A+  G E+    P  + V+G   Y  L   L+  
Sbjct: 75  LAAADTGRK----------VVAVGCMAERYGNELADSLPEADAVLGFDHYADLSARLDDV 124

Query: 144 RFGKRVVDTDYSVEDKFERLSIVD---------------GGYN----RKR---GVTAFLT 181
             G+ +     S   K   +S V                 G+     R R      A L 
Sbjct: 125 VAGRTIAAHTPSDRRKLLPISPVQRPAAATEVEVPGHAQHGWGPRVLRTRLDDSPVAALK 184

Query: 182 IQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK--G 239
           I  GCD+ C+FC +P  RG  +SR   ++V EA  L +NG  E+ L+ +N  ++ GK  G
Sbjct: 185 IASGCDRRCSFCAIPSFRGSFVSRQPDEIVAEAAWLAENGAKELFLVSENSTSY-GKDFG 243

Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
            DG +     LL  L+ I G+ R+R +   P +    L+KA      +  Y  L  Q  S
Sbjct: 244 RDGTRA-LELLLPRLAGIDGIERVRVSYLQPAETRPQLVKAIATTPGVADYFDLSFQHSS 302

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA-----TMDLV 354
           +++L+ M R  +   +  + ++IR   P+  I ++ IVGFPGET+DD        T   +
Sbjct: 303 EQVLRRMRRFGSTDSFLALTEQIREYSPEAGIRTNVIVGFPGETEDDLAELERFLTGARL 362

Query: 355 DKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQII 414
           D +G      F YS   GT       ++D    AER+  +   + E      +  +G  +
Sbjct: 363 DAVGV-----FGYSDEDGTEAETFDGKLDPAEVAERVARISALVEELTAQRAEDRIGTFV 417

Query: 415 EVLIEKHGKEKGKLVGR----SPWL--QSVVL---NSKNHNIGDIIKVRITD 457
           +VL+E  G +    VGR    +P +  + V+L   N+K   +G+I++  + D
Sbjct: 418 DVLVEHDGADGDDAVGRAAHQAPEVDGECVILEDENTKPLAVGEIVRCEVVD 469


>gi|312879348|ref|ZP_07739148.1| SSU ribosomal protein S12P methylthiotransferase [Aminomonas
           paucivorans DSM 12260]
 gi|310782639|gb|EFQ23037.1| SSU ribosomal protein S12P methylthiotransferase [Aminomonas
           paucivorans DSM 12260]
          Length = 432

 Score =  146 bits (369), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 132/453 (29%), Positives = 205/453 (45%), Gaps = 49/453 (10%)

Query: 28  FVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRI 87
           F  S GC  N  DS R   +    GY        ADL V+NTC   + A   V   L  I
Sbjct: 5   FTLSLGCSKNRVDSERFLGILHEAGYRGTQDPRGADLCVVNTCGFLQSA---VAENLDAI 61

Query: 88  RNLKNSRIKEGGDL-LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF- 145
            +L+  R+KE G++  + V GC+      E+    P V+++   + +      L   R  
Sbjct: 62  LDLE--RMKERGEVGRIAVVGCLVNRYEAELRAELPTVDLLARAEDWEGFRRFLGVPRSS 119

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G R+V       D+F R                +L + EGCD  C++C++P  RG   S 
Sbjct: 120 GCRMV---LPGGDRFVR----------------YLKVAEGCDNRCSYCMIPSIRGPLRSL 160

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSL-SEIKGLVRL 263
            L  +V EA  L+  G  EI L+ Q++ A+   GLD G + + +DLL +L   + G V L
Sbjct: 161 PLRDLVREAEALVAEGAREICLVAQDLTAY---GLDRGGRESLTDLLDALEPSLPGDVFL 217

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R    HP  ++  L++       +  YL +PVQ  S RIL +M R        ++ +  R
Sbjct: 218 RLLYLHPERITPALLERVAKSPQIHSYLDVPVQHASPRILAAMGRPSDPETLARLFETAR 277

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           S+ PD A+ +  +VGFP ET+ D    +  ++++ + +  +F +SP  G P + +   V 
Sbjct: 278 SIDPDFALRTTVMVGFPQETEADLSVLLRFLERVRFDRIGAFAFSPEEGAPAATLPHPVR 337

Query: 384 ENVKAERL-----LCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PW 434
            +    RL     L      R Q++ F     G+++ VL+E+   E+G L GRS    P 
Sbjct: 338 PSTARRRLERVMDLGASLSFRRQRL-FE----GRLLSVLVER--VEEGVLEGRSFREAPE 390

Query: 435 LQSVVLNSKNHNI--GDIIKVRITDVKISTLYG 465
           +  VV       +  G  I VRI +     L G
Sbjct: 391 VDGVVEIRGGDALLPGQRISVRILEALEHDLIG 423


>gi|257387570|ref|YP_003177343.1| MiaB-like tRNA modifying enzyme [Halomicrobium mukohataei DSM
           12286]
 gi|257169877|gb|ACV47636.1| MiaB-like tRNA modifying enzyme [Halomicrobium mukohataei DSM
           12286]
          Length = 420

 Score =  146 bits (369), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 116/448 (25%), Positives = 208/448 (46%), Gaps = 35/448 (7%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           ++ +++YGC  N  ++  +E      G+   +  ++AD+ +LNTC + EK    +     
Sbjct: 3   QYHIETYGCTSNRGETQEIEQALREGGHYPADGPEEADVAILNTCTVLEKTERNM----- 57

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +R  +    +  GDL  VV GC+A A+GEE   R+  V+  V    +  +P+ +     
Sbjct: 58  -LRRAEELDAETPGDL--VVTGCMALAQGEEF--RAADVDAEV--LHWDDVPQHVLNGEC 110

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                DT+          +++D       GV   L I  GC   C++C+     G   S 
Sbjct: 111 PTVTPDTE----------TVLD-------GVVGILPIARGCMSDCSYCITKQATGRIESP 153

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           S+ + V++AR L+  G  E+ + GQ+   +      GE      L    +EI G  R+R 
Sbjct: 154 SVEENVEKARALVHAGAKELRVTGQDTGVYGWDTNQGESLLPELLERICTEIDGEFRVRV 213

Query: 266 TTSHPRDMS---DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
             ++P+ +    + L +   + D L  +LH PVQSGSD +L  M R+H   EY  ++D  
Sbjct: 214 GMANPKGVHGVREELARVFAEHDELYNFLHAPVQSGSDDVLADMRRQHAVGEYVAVVDTF 273

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
                   +S+DFIVGFP ET+ DF+ +M L+ +    +    ++S R GT  ++M + +
Sbjct: 274 DEYLDYWTLSTDFIVGFPSETESDFQQSMALLRETRPEKINVTRFSKRPGTDAADM-KGL 332

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
              +K +R   + +   +      +A +G+   VL+ + G +   +     + Q VV+++
Sbjct: 333 GGQIKKDRSKAMSELKMDVTGDAYEAMLGEQKRVLLTEDGTDDSLVGYDEAYRQVVVVDA 392

Query: 443 KNH--NIGDIIKVRITDVKISTLYGELV 468
           +     +GD +   IT       +GE +
Sbjct: 393 QQRGLEVGDFVDCEITSHNTVYAFGEPI 420


>gi|301163425|emb|CBW22976.1| putative oxidoreductase [Bacteroides fragilis 638R]
          Length = 432

 Score =  146 bits (368), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 119/448 (26%), Positives = 214/448 (47%), Gaps = 35/448 (7%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDD--ADLIVLNTCHIREKAAEKVYSFLGRIR 88
           + GC  N+ DS ++       GY+  +  +    ++ V+NTC     A E+  + +    
Sbjct: 10  TLGCSKNLVDSEQLMRQLEEAGYDVTHDSEKPTGEIAVINTCGFIGDAKEESINMI---- 65

Query: 89  NLKNSRIKEGGDL-LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147
            L+ ++ KE G+L  + V GC+++   +E+    P V+   G   +  L + L +A    
Sbjct: 66  -LEFAQEKEEGNLEKLFVMGCLSERYLKELAIEIPQVDKFYGKFNWKGLLQDLGKA---- 120

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
                 Y  E   ER       Y       A+L I EGCD+ C++C +P   G  +SR +
Sbjct: 121 ------YHEELHIERTLTTPKHY-------AYLKISEGCDRKCSYCAIPIITGRHVSRPI 167

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYT 266
            +++DE R L+ NGV E  ++ Q +  +   G+D  +K    +L+  +SEI G+  +R  
Sbjct: 168 EEILDEVRYLVSNGVKEFQVIAQELTYY---GVDLYKKQMLPELIERISEIPGVEWIRLH 224

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
            ++P      L +   + D +  Y+ + +Q  SD +L+ M R  T  E  ++I++ R   
Sbjct: 225 YAYPAHFPKELFRVMRERDNVCKYMDIALQHISDNMLQRMRRHVTKKETYRLIEQFRKEV 284

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT-PGSNMLEQVDEN 385
           P I + +  +VG PGET++DF    + V K+ + +  +F YS   GT   +N  + + + 
Sbjct: 285 PGIHLRTTLMVGHPGETEEDFEELKEFVRKVRFDRMGAFTYSEEEGTYAAANYEDSIPQE 344

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPWLQSVVL--- 440
           +K  RL  L    +      + + VGQ ++V+I++   E   G+    SP +   VL   
Sbjct: 345 LKQARLDELMAIQQGISTELSASKVGQKMKVIIDRIEGEYYIGRTEFDSPEVDPEVLIRC 404

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
              N  IG+  +V++ D     L+GE++
Sbjct: 405 EGDNLMIGNFYQVQVIDSDEFDLFGEII 432


>gi|225012682|ref|ZP_03703117.1| MiaB-like tRNA modifying enzyme YliG [Flavobacteria bacterium
           MS024-2A]
 gi|225003215|gb|EEG41190.1| MiaB-like tRNA modifying enzyme YliG [Flavobacteria bacterium
           MS024-2A]
          Length = 433

 Score =  146 bits (368), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 128/449 (28%), Positives = 213/449 (47%), Gaps = 43/449 (9%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEK-VYSFLGRI 87
           V + GC  NVYDS  +     +   E V+  ++ +++V+NTC   + A E+ V + L +I
Sbjct: 13  VITLGCSKNVYDSEVLMGQLRANDQEVVHQ-EEGNIVVINTCGFIDNAKEESVNTILEQI 71

Query: 88  RNLKNSRIKEGGDL-LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
            N      KE G +  V V GC+++    ++ +  P V+   G      LP+LL      
Sbjct: 72  EN------KEAGKVDKVYVTGCLSERYKPDLQKEIPQVDEYFGTTD---LPQLL------ 116

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
            +V+  DY  E   ER+      +       A+L + EGCD+ C+FC +P  RG   S  
Sbjct: 117 -KVLGADYKHELVGERILTTPKHF-------AYLKVSEGCDRPCSFCAIPIMRGKHRSTP 168

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD---GEKCTFSDLLYSLSEIKGLVRL 263
           + +VV +A+ L  +GV E+ L+ Q++  +   GLD     K     L     E    +RL
Sbjct: 169 IEEVVIQAQNLARDGVKELMLIAQDLTYY---GLDLYKERKLADLLLALVAVEGIEWIRL 225

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
            Y  + P    + ++K   +   +  YL +P+Q  +D ILKSM R  T  +   ++ + R
Sbjct: 226 HY--AFPTGFPEDVLKVMREQPKVCNYLDIPLQHIADPILKSMRRGTTKEKTTILLKKFR 283

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              P I + +  IVG+PGET++DF    + V ++ + +   F YS    T    + + V 
Sbjct: 284 KEVPGIILRTSLIVGYPGETEEDFETLKEWVKEMRFERLGCFTYSHEENTHAHQLEDNVP 343

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVV 439
           E +K ER   + +   +     N +CVG+    LI++  KE    VGR    SP + + V
Sbjct: 344 EEIKQERSNAIMEIQSQISWEHNQSCVGKTYRCLIDR--KEGVHYVGRTFMDSPDVDNEV 401

Query: 440 L-NSKNHNI--GDIIKVRITDVKISTLYG 465
           L ++  H +  G+ + + IT+     L G
Sbjct: 402 LVDATAHYVKQGEFVNLLITEATDYDLVG 430


>gi|71282254|ref|YP_268518.1| putative tRNA modifying protein [Colwellia psychrerythraea 34H]
 gi|123774927|sp|Q484J7|RIMO_COLP3 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|71147994|gb|AAZ28467.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Colwellia
           psychrerythraea 34H]
          Length = 454

 Score =  146 bits (368), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 129/455 (28%), Positives = 218/455 (47%), Gaps = 50/455 (10%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ DS R+     ++GY+  NS DDA+L+++NTC   + A ++    +G     
Sbjct: 25  SLGCPKNLVDSERILTQLRTEGYDVTNSYDDAELVIVNTCGFIDSAVQESLDTIGEALAA 84

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
                       V+V GC+   + +EI+   P V  V GP  Y    E+L  A+  + V 
Sbjct: 85  NGK---------VLVTGCLG-VKKDEIIELHPNVLGVTGPHAY---DEVL--AQVHEHVA 129

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
             ++   + F  L +   G        A+L I EGC+  CTFC++P  RG   SR +  V
Sbjct: 130 KPEH---NPFIDL-VPPQGVKLTPKHYAYLKISEGCNHRCTFCIIPSMRGDLDSRPVGDV 185

Query: 211 VDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYSLSEIKG 259
           + EA++L+D+GV E+ ++ Q+ +A           W G  +   K     L   L++   
Sbjct: 186 LGEAKRLVDSGVKELLVISQDTSAYGVDVKHKTDFWDGMPV---KTHMQQLCEELAKQGV 242

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
            +RL Y   +P       + A G +   +PYL +P Q  + RILK M R  ++    + I
Sbjct: 243 WIRLHYVYPYPHVDKIIPLMAEGKI---LPYLDIPFQHANKRILKLMKRPGSSDRVLERI 299

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            + R + P++ I S FIVGFPGET+++F   ++ +++    +   FKYSP  G   + + 
Sbjct: 300 AKWREICPELVIRSTFIVGFPGETEEEFEELLNFLEEAQLDRVGCFKYSPVEGATANALP 359

Query: 380 EQVDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS---- 432
           + V + V  +RL   + +Q K+   ++      +GQ   +L+++       +VGRS    
Sbjct: 360 DHVSDEVMEDRLQRFMAVQAKISSDKLQVR---IGQEYLILVDE--VNGLGIVGRSYMDA 414

Query: 433 PWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYG 465
           P +   V  S +++   GD I V+I       ++G
Sbjct: 415 PEVDGKVYLSDDYDAKPGDQIWVQIIHADEHDVWG 449


>gi|53713716|ref|YP_099708.1| putative Fe-S oxidoreductase [Bacteroides fragilis YCH46]
 gi|60681987|ref|YP_212131.1| putative oxidoreductase [Bacteroides fragilis NCTC 9343]
 gi|81314949|sp|Q5LCF8|RIMO_BACFN RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|81382384|sp|Q64TK5|RIMO_BACFR RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|52216581|dbj|BAD49174.1| putative Fe-S oxidoreductase [Bacteroides fragilis YCH46]
 gi|60493421|emb|CAH08207.1| putative oxidoreductase [Bacteroides fragilis NCTC 9343]
          Length = 432

 Score =  146 bits (368), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 119/448 (26%), Positives = 214/448 (47%), Gaps = 35/448 (7%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDD--ADLIVLNTCHIREKAAEKVYSFLGRIR 88
           + GC  N+ DS ++       GY+  +  +    ++ V+NTC     A E+  + +    
Sbjct: 10  TLGCSKNLVDSEQLMRQLEEAGYDVTHDSEKPTGEIAVINTCGFIGDAKEESINMI---- 65

Query: 89  NLKNSRIKEGGDL-LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147
            L+ ++ KE G+L  + V GC+++   +E+    P V+   G   +  L + L +A    
Sbjct: 66  -LEFAQEKEEGNLEKLFVMGCLSERYLKELAIEIPQVDKFYGKFNWKGLLQDLGKA---- 120

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
                 Y  E   ER       Y       A+L I EGCD+ C++C +P   G  +SR +
Sbjct: 121 ------YHEELHIERTLTTPKHY-------AYLKISEGCDRKCSYCAIPIITGRHVSRPI 167

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYT 266
            +++DE R L+ NGV E  ++ Q +  +   G+D  +K    +L+  +SEI G+  +R  
Sbjct: 168 EEILDEVRYLVSNGVKEFQVIAQELTYY---GVDLYKKQMLPELIERISEIPGVEWIRLH 224

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
            ++P    + L +   + D +  Y+ + +Q  SD +L+ M R  T  E  ++I++ R   
Sbjct: 225 YAYPAHFPEELFRVMRERDNVCKYMDIALQHISDNMLQRMRRHVTKKETYRLIEQFRKEV 284

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT-PGSNMLEQVDEN 385
           P I + +  +VG PGET+ DF    + V K+ + +  +F YS   GT   +N  + + + 
Sbjct: 285 PGIHLRTTLMVGHPGETEGDFEELKEFVRKVRFDRMGAFTYSEEEGTYAAANYEDSIPQE 344

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPWLQSVVL--- 440
           +K  RL  L    +      + + VGQ ++V+I++   E   G+    SP +   VL   
Sbjct: 345 LKQARLDELMAIQQGISTELSASKVGQKMKVIIDRIEGEYYIGRTEFDSPEVDPEVLIRC 404

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
              N  IG+  +V++ D     L+GE++
Sbjct: 405 EGDNLMIGNFYQVQVIDSDEFDLFGEII 432


>gi|305663521|ref|YP_003859809.1| RNA modification enzyme, MiaB family [Ignisphaera aggregans DSM
           17230]
 gi|304378090|gb|ADM27929.1| RNA modification enzyme, MiaB family [Ignisphaera aggregans DSM
           17230]
          Length = 426

 Score =  146 bits (368), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 119/443 (26%), Positives = 218/443 (49%), Gaps = 27/443 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + ++++YGC +N  D+  ++ +   +  E V+S  +AD+I+LNTC +R     +    L 
Sbjct: 2   KIYIETYGCALNRADTNIIKTLLIEKKIEIVDSPREADVIILNTCVVRYDTEVR---MLK 58

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R+  L  +  K      ++V+GC+A+A   +I   +P   V++ PQ+ +R+ E +     
Sbjct: 59  RLEELSKTGKK------IIVSGCMARALPIKIRSVNPKA-VLLPPQSIHRIYEAIN---- 107

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                D  Y   D+ +  +++    +   GV A + + EGC   C+FC+V   R    S 
Sbjct: 108 ----ADDGYIFFDEIKTFTVMPKIID---GVKATIPVAEGCLDECSFCIVKIARPHLKSI 160

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI-KGLVRLR 264
            +  +V+  +++I  G  EI +  Q+++ + G  + GE      LL S+ EI +    +R
Sbjct: 161 PIENIVNAVKEVISMGAIEIEITAQDLSVY-GYDIYGEYA-LPKLLESILEIEREDFVIR 218

Query: 265 YTTSHPRDMSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
               +PR + + L +    L    +  ++H+PVQSG++R+L++MNR+H    +  II  +
Sbjct: 219 IGQLNPRHLVNYLDRFIAILRDPRVYKHVHIPVQSGNNRVLEAMNRKHGVELFLDIISEL 278

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R     I I++D IVG PGE ++ F  ++ L+ +    +    +YSPR  T  S++++Q+
Sbjct: 279 RKKIEGIQIATDIIVGHPGEDEEAFMDSVKLITENYIDRVHIARYSPRPLT-RSSLMKQI 337

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
            + +K  R   ++K         N   +G I EV I +    +   +GR    + VVL+ 
Sbjct: 338 PDPIKKSRSSYIEKIYEVVAYEVNREYIGSIAEVWITEIDSRRNIAIGRLFNYRPVVLDR 397

Query: 443 KNHNIGDIIKVRITDVKISTLYG 465
               +G    V I D     L G
Sbjct: 398 GPEALGRKAFVEIRDATFYDLRG 420


>gi|313125740|ref|YP_004036010.1| miab-like tRNA modifying enzyme [Halogeometricum borinquense DSM
           11551]
 gi|312292105|gb|ADQ66565.1| MiaB-like tRNA modifying enzyme [Halogeometricum borinquense DSM
           11551]
          Length = 417

 Score =  146 bits (368), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 116/449 (25%), Positives = 209/449 (46%), Gaps = 40/449 (8%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R+ +++YGC  N  +S  +E      G+ RV   ++AD+ ++NTC + EK      + L 
Sbjct: 3   RYHIETYGCTSNRGESRAIESALRDAGHYRVEEPEEADVAIMNTCTVVEKTER---NMLR 59

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R + L+    +E  DL  ++ GC+A A+GEE         ++     +  +P  +     
Sbjct: 60  RAKELE----EETADL--IITGCMALAQGEEFHEEDVDAQIL----HWDDVPSAVTNGEC 109

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                 T+           ++DG       V   L I  GC   C++C+  +  G   S 
Sbjct: 110 PTPGPGTE----------PVLDG-------VVGILPIARGCMSNCSYCITKFATGRVDSP 152

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKGLVRLR 264
            + + V++AR L+  G  EI + GQ+   +   G D       +LL  + SEI+G  R+R
Sbjct: 153 PVEENVEKARALVHAGAKEIRITGQDTGVY---GWDKGDRKLPELLDRICSEIEGDFRVR 209

Query: 265 YTTSHP---RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
              ++P     + + L++     D L  ++HLPVQSGSD +L++M R+H   ++ +I++ 
Sbjct: 210 LGMANPGGIHGIHEELVEVFDRHDKLYNFIHLPVQSGSDTVLEAMRRQHRVDKFVEIVET 269

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
                    +S+DFIVGFP ET+ D   +M L  ++   +    ++S R GT  ++M + 
Sbjct: 270 FDETLDYWTLSTDFIVGFPTETEADHEQSMALFREVRPEKVNVTRFSKRPGTDAADM-KG 328

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           +   VK ER   + +   +      ++ +G+   V++ + G           + Q +V N
Sbjct: 329 LGGTVKKERSKEMSELKMDIVAEAYESMIGETHRVMVVREGTGDSVKCRDEAYRQIIVQN 388

Query: 442 SKNHNI--GDIIKVRITDVKISTLYGELV 468
           +  H I  GD + V +T  +    +G+ V
Sbjct: 389 ASEHGIEPGDFLDVEVTSHQTVYAFGKPV 417


>gi|302344678|ref|YP_003809207.1| MiaB-like tRNA modifying enzyme YliG [Desulfarculus baarsii DSM
           2075]
 gi|301641291|gb|ADK86613.1| MiaB-like tRNA modifying enzyme YliG [Desulfarculus baarsii DSM
           2075]
          Length = 437

 Score =  146 bits (368), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 117/440 (26%), Positives = 202/440 (45%), Gaps = 22/440 (5%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC-HIREKAAEKVYSFLG 85
           F++ + GC  N+ +   +  M  ++G+      + AD +++NTC  IR    E + + L 
Sbjct: 4   FYLLNLGCAKNLVEGEHLAGMLLAEGWLASERPEAADWLIVNTCGFIRPAVDEAIDNIL- 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
               L + R + G  L VV  GC+    G ++ R  P  +++V P     LP LL     
Sbjct: 63  ---ELHDER-RPGQRLAVV--GCLVGRYGRKLARSLPEADLLVAPGRLGDLPALLAAPPA 116

Query: 146 GKRVVDTDYSVEDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            +  +    ++ D     ++  G G+       A+L + +GC   C FC +P  RG   S
Sbjct: 117 QRLAIAPPRAIFDAATPRALSTGPGW-------AYLRLSDGCRHRCHFCTIPAIRGPLRS 169

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R  + ++ EA  +  +GV E+ L+ Q+++++     DG     + LL  ++ + G+  +R
Sbjct: 170 RPAADILAEAEAVAQSGVVELNLVAQDLSSYGHDRPDGPD--LAALLPQIAAVPGVAWVR 227

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
               HP  +   LI+A      ++PY  LP+Q  +D +L++M RR T  +   +ID IR+
Sbjct: 228 PLYLHPDVLETRLIRAICQTPGVLPYFDLPLQHLADPVLRAMGRRRTGAQLLALIDEIRA 287

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           +RP+  +    +VG PGE   +F   M  V++I +    +F + P  G+  S  L     
Sbjct: 288 MRPEAVLRGTLLVGHPGEGAAEFTRLMRGVEEIAFDHLGAFAFCPEPGS-RSARLPAPSP 346

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSPWLQSVVLNSK 443
            +  ERL  L    R        A VGQ + +L +  H        GR+ W Q+  ++ +
Sbjct: 347 ELAQERLETLMAAQRAISAGKLAAQVGQQLSLLAQGPHPDHPYVRWGRT-WRQAPEVDGQ 405

Query: 444 N-HNIGDIIKVRITDVKIST 462
                GD    RI   +IS 
Sbjct: 406 TIVTDGDPAPGRIHLCRISA 425


>gi|157164712|ref|YP_001466755.1| hypothetical protein CCC13826_0085 [Campylobacter concisus 13826]
 gi|157101465|gb|EAT97324.2| conserved hypothetical protein [Campylobacter concisus 13826]
          Length = 412

 Score =  146 bits (368), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 110/402 (27%), Positives = 196/402 (48%), Gaps = 37/402 (9%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           Q+ F K++GC+ N+YD+  ++   + + YE  N  + AD++V+N+C +   A   V    
Sbjct: 2   QKIFFKTFGCRTNIYDTELLKS--YIKDYEITNDEEVADIVVINSCTVTNSADSGV---- 55

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
              RN  N   + G    V++ GC A ++G E+   +  +  V+G      L ELL++ +
Sbjct: 56  ---RNYINGVKRRGAK--VILTGCGAVSKGRELF--ASGIYGVLGASKKSDLNELLKQEK 108

Query: 145 FGKRVVDTDYSVEDKFE--RLSIVDGG--YNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
                          FE   L+ VD     N +    AF+ IQEGC+  C++C++P  RG
Sbjct: 109 -------------PFFELGNLNSVDKNIVTNYENHTKAFIKIQEGCNFNCSYCIIPSVRG 155

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
              S   + ++ EAR L  NG  E+ L G N+ ++ GK  +    +   LL +L +I G+
Sbjct: 156 KARSMDEAMILKEARILAQNGYNELVLTGTNIGSY-GKDTN---SSLGKLLANLGKISGI 211

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R  +  P  + +   +   + + L  +LH+ +Q  S  +LK M RR+ A+   ++ +
Sbjct: 212 RRIRLGSIEPSQIDESFREILKE-EWLERHLHIALQHTSQAMLKIMRRRNNAFSDLELFN 270

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
            + S+    A+ +D+IVG PGE+++ +   ++   K       +F YSPR  T  + +  
Sbjct: 271 ELSSL--GFALGTDYIVGHPGESEEIWAEAVENFKKFPITHLHAFVYSPRRDTHSATLKS 328

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422
            V  +V   RL  LQ    +   +F     G +  ++ +K+G
Sbjct: 329 DVSGDVAKSRLKILQGIALQNNENFRKKHNGTLKILVEQKNG 370


>gi|110597800|ref|ZP_01386083.1| MiaB-like tRNA modifying enzyme [Chlorobium ferrooxidans DSM 13031]
 gi|110340525|gb|EAT59008.1| MiaB-like tRNA modifying enzyme [Chlorobium ferrooxidans DSM 13031]
          Length = 448

 Score =  146 bits (368), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 114/413 (27%), Positives = 203/413 (49%), Gaps = 33/413 (7%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +R    + GC++N  ++  + +   SQG+++ +  + A+LI+++TC +  +A +K    +
Sbjct: 2   KRVAAVTLGCKLNYAETSSILESLCSQGWKQSSIEEGAELIIIHTCAVTAQAEKKCRQKI 61

Query: 85  -GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLP---ELL 140
            G IRN  +SRI         V GC AQ    + L     ++ ++G +  + +    +++
Sbjct: 62  RGIIRNNPDSRI--------AVIGCYAQLN-PDALSAIKGIDAILGSKEKFAIKWYDDIM 112

Query: 141 ERARFGKRVVDTDYSVEDK----FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
             A     V  + + ++D     +   S+   G++R R   AFL IQ+GCD  C++C +P
Sbjct: 113 AGAVSLPLVKVSQHGLKDAVYPGYSSTSV--EGHDRTR---AFLKIQDGCDSGCSYCTIP 167

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256
             RG   S    ++V  A  L  +G  EI L G N+  +   G+        +LL  L +
Sbjct: 168 LIRGRSRSLPPDEIVARAMILASSGYREIVLTGVNIGDYLENGIG-----LPELLRRLEK 222

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           +  + R+R ++  P  +    I+   +   ++P+LH+P+QSGSDRILK+M RR+    YR
Sbjct: 223 VP-VSRIRISSIEPDVVDSEFIELVANSKTIVPHLHIPLQSGSDRILKAMRRRYDTALYR 281

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP-- 374
           + +  + +   D +I +D +VGFPGE+++DF      ++++  A    F  S R GT   
Sbjct: 282 ERVSGVAAHISDCSIGADVMVGFPGESEEDFLQICRFIEELPLAYLHVFSCSIRPGTALA 341

Query: 375 ---GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE 424
               S  L  V     A R   L    R ++ +F +  +G    VL E+  +E
Sbjct: 342 RQTASRELIAVAPAEIARRSRVLNDLGRRKEAAFKERYIGTKCMVLFEECRQE 394


>gi|163782285|ref|ZP_02177283.1| hypothetical protein HG1285_05845 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882318|gb|EDP75824.1| hypothetical protein HG1285_05845 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 422

 Score =  145 bits (367), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 127/448 (28%), Positives = 214/448 (47%), Gaps = 38/448 (8%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA-EKVYSFLGRI 87
           V S GC  N+ DS  +     S G E  + ++ AD IV+NTC   E A  E + + L  I
Sbjct: 5   VISLGCSKNLVDSEILLARLKSAGVELTSDIESADCIVVNTCGFIEDAKRESIDTILEAI 64

Query: 88  RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147
              K           V+V GC+ +   +E+ +    V    G Q++    E+L+      
Sbjct: 65  DTGKK----------VLVMGCLVERYRKELEKELTEVEGFFGTQSW---DEILKHLGLQP 111

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
           +     YS      RL      Y       A++ I EGC++ C+FC +P  RG  +SR +
Sbjct: 112 K-----YSAP---YRLLTTPTSY-------AYVKIAEGCNRLCSFCAIPKIRGRHLSRPV 156

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
             +V E + L   GV EI ++ Q+   + GK L  E    ++LL  L E++G+  +R   
Sbjct: 157 EDIVSEVKDLASRGVKEIDIVSQDTTYY-GKDLYRE-YRLTELLKELEEVEGIEWIRLLY 214

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
            +P ++SD LI    D + ++PY  +P+Q  S ++LKSM R +     R++I++IRS  P
Sbjct: 215 LYPTEVSDQLISYIRDSEKVLPYFDMPIQHISSKVLKSMRRGYDEGFVRRLIEKIRSEIP 274

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
           +  + +  IVG+P E ++DFR  ++ V++  +     F YSP   T    + + + + +K
Sbjct: 275 EAVLRTTLIVGYPNEDEEDFRRLLNFVEEGHFHWLGVFTYSPEEDTGAFPLGDPLPQELK 334

Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-----KGKLVGRSPWLQSVVL-- 440
            ER   L +  R+     N + VG+  +V+++    E     KG+    +P +   V   
Sbjct: 335 EERKETLIEAQRKITARKNASLVGKRFKVIVDGFSSEFSFVPKGRAYLHAPEVDGAVYIE 394

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
           + +   +GD ++V IT      L G +V
Sbjct: 395 SEEPLKVGDRVEVEITQATDYDLGGRVV 422


>gi|257056506|ref|YP_003134338.1| MiaB-like tRNA modifying enzyme YliG [Saccharomonospora viridis DSM
           43017]
 gi|256586378|gb|ACU97511.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Saccharomonospora
           viridis DSM 43017]
          Length = 480

 Score =  145 bits (367), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 120/461 (26%), Positives = 206/461 (44%), Gaps = 40/461 (8%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +R  + + GC  N  DS  +     + G++  +  + +D+IV+NTC   E+A +     L
Sbjct: 10  RRVSLLTLGCARNEVDSEELAGRLAAGGWQLSDDPESSDVIVVNTCGFVEQAKKDSVDTL 69

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
               +             VV  GC+A+  G+E+    P  + V+G   Y  L E L    
Sbjct: 70  LAAADTGAK---------VVAVGCMAERYGKELAENLPEADAVLGFDHYPHLAERLVDIA 120

Query: 145 FGKRVVDTDYSVEDKFERLSIVD---------------GGYN----RKR---GVTAFLTI 182
            G+ V    ++  D+   L I                  G+     R R      A L I
Sbjct: 121 EGRPV--ESHTPTDRRTLLPITPVDRQAATDEVTVPGHAGWGPRVLRSRLDDSPVAPLKI 178

Query: 183 QEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD- 241
             GCD+ C+FC +P  RG  +SR   ++V EA  L   GV E+ L+ +N  ++ GK LD 
Sbjct: 179 ASGCDRRCSFCAIPSFRGSFVSRHPDELVAEAEWLATQGVRELFLVSENSTSY-GKDLDR 237

Query: 242 --GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
             G       LL  L+ + G+ R+R +   P +    L++       +  Y  L  Q  S
Sbjct: 238 SLGGTRALERLLPRLAAVDGIDRVRVSYLQPAETRPDLVRVIATTPGVADYFDLSFQHAS 297

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
           + +L+ M R  +   + ++I++IRS  PD  I ++ IVGFPGET++D       + +   
Sbjct: 298 ESVLRRMRRFGSTESFLKLIEQIRSYAPDAGIRTNVIVGFPGETEEDVAELERFLTEARL 357

Query: 360 AQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419
                F YS   GT       ++DE+V  ER+  +   + E      +  +G +++VL+E
Sbjct: 358 DAVGVFGYSDEDGTEAETFDGKLDEDVITERVGRIAALVEELSAQRAEGRIGSVVDVLVE 417

Query: 420 KHGKE-KGKLVGRSPWL--QSVVLNSKNHNIGDIIKVRITD 457
              +E  G+   ++P +  + VVL   +  +G++++  + D
Sbjct: 418 SVDEEIVGRAAHQAPEVDGECVVLGDLDCKVGELLRCEVVD 458


>gi|254391833|ref|ZP_05007028.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC
           27064]
 gi|294815471|ref|ZP_06774114.1| MiaB-like tRNA modifying enzyme YliG [Streptomyces clavuligerus
           ATCC 27064]
 gi|197705515|gb|EDY51327.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC
           27064]
 gi|294328070|gb|EFG09713.1| MiaB-like tRNA modifying enzyme YliG [Streptomyces clavuligerus
           ATCC 27064]
          Length = 499

 Score =  145 bits (367), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 130/455 (28%), Positives = 198/455 (43%), Gaps = 59/455 (12%)

Query: 23  VPQRFFVK--SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKV 80
           +P+R  V   + GC  N  DS  +     + G++ V    DAD+ V+NTC   E A +  
Sbjct: 1   MPERRTVALVTLGCARNEVDSEELAGRLAADGWQLVEDAADADVAVVNTCGFVEAAKKDS 60

Query: 81  YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140
              L    +LK+     G    VV  GC+A+  G+E+    P  + V+G   Y  + + L
Sbjct: 61  VDALLEANDLKD----HGRTQAVVAVGCMAERYGKELAEALPEADGVLGFDDYADISDRL 116

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT----------------------- 177
           +    G   +   ++  D+ + L +         GV                        
Sbjct: 117 QTILSGG--IHASHTPRDRRKLLPLSPAERQSATGVALPGHGDAAPAPIVDLPEGVAPES 174

Query: 178 ---------------AFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGV 222
                          A + +  GCD+ C+FC +P  RG  ISR  S V+ E R L + GV
Sbjct: 175 GPRAPLRRRLGSSPVASVKLASGCDRRCSFCAIPSFRGSFISRRPSDVLGETRWLAEQGV 234

Query: 223 CEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHG 282
            E+ L+ +N N   GK L G+      LL  L+ + G+ R+R +   P +M   LI    
Sbjct: 235 KEVMLVSEN-NTSYGKDL-GDIRLLETLLPELAAVDGIERVRVSYLQPAEMRPGLIDVLT 292

Query: 283 DLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGE 342
               + PY  L  Q  +  +L+SM R      + ++++ IRS  P   + S+FIVGFPGE
Sbjct: 293 STPKIAPYFDLSFQHSAPDVLRSMRRFGDTERFLELLETIRSKAPQAGVRSNFIVGFPGE 352

Query: 343 TDDDFRA-----TMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKK 397
           ++ DF       T   +D IG      F YS   GT  +    ++DE+V AERL  L + 
Sbjct: 353 SEADFAELERFLTHARLDAIGV-----FGYSDEDGTEAAGYGNKLDEDVVAERLAHLSRL 407

Query: 398 LREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS 432
             E      +  VG+ +EVL+E    E G  VGR+
Sbjct: 408 AEELTAQRAEERVGETLEVLVESVDAEDGA-VGRA 441


>gi|312797208|ref|YP_004030130.1| tRNA 2-methylthioadenosine synthase [Burkholderia rhizoxinica HKI
           454]
 gi|312168983|emb|CBW75986.1| tRNA 2-methylthioadenosine synthase [Burkholderia rhizoxinica HKI
           454]
          Length = 197

 Score =  145 bits (367), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 75/192 (39%), Positives = 114/192 (59%), Gaps = 13/192 (6%)

Query: 287 LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDD 346
           L+ +LHLPVQ GSDRIL +M R +T  EY+ I+ R+R++RP +++S+DFIVGFPGETDDD
Sbjct: 4   LVSHLHLPVQHGSDRILMAMKRGYTVLEYKSIVRRLRAIRPQLSLSTDFIVGFPGETDDD 63

Query: 347 FRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFN 406
              TM L+D++ Y  +FSF +SPR GTP + + +    +VK  RL  LQ  +       +
Sbjct: 64  HAKTMKLIDEVQYDTSFSFIFSPRPGTPAATLHDDTPRDVKLARLQQLQAAIEAHAAKIS 123

Query: 407 DACVGQIIEVLIEKHG-KEKGKLVGRS--------PWLQSVVLNSKNHNIGDIIKVRITD 457
           ++ VG +  +L+E+   K+  +L GR+        P  Q+    S    +G ++ V I  
Sbjct: 124 ESMVGTVQRILVERSARKDPNELAGRTENNRVVNFPAPQA----SHARLLGQMVDVEIVH 179

Query: 458 VKISTLYGELVV 469
               +L GEL +
Sbjct: 180 AYPHSLRGELAL 191


>gi|291454518|ref|ZP_06593908.1| conserved hypothetical protein [Streptomyces albus J1074]
 gi|291357467|gb|EFE84369.1| conserved hypothetical protein [Streptomyces albus J1074]
          Length = 490

 Score =  145 bits (367), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 128/452 (28%), Positives = 198/452 (43%), Gaps = 54/452 (11%)

Query: 23  VPQRFFVK--SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKV 80
           +P+R  V   + GC  N  DS  +     + G++ V   + AD+ V+NTC   E A +  
Sbjct: 1   MPERRTVALVTLGCARNEVDSEELAGRLEADGWQLVEDAEAADVAVVNTCGFVEAAKKDS 60

Query: 81  YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG----------- 129
              L    +LK     +G    VV  GC+A+  G+E+    P  + V+G           
Sbjct: 61  VDALLEANDLK----AQGRTQAVVAVGCMAERYGKELAEALPEADGVLGFDDYADISDRL 116

Query: 130 -------------PQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDG-------- 168
                        P+   +L  +    R    V    ++ E       + DG        
Sbjct: 117 QTILGGGIHASHTPRDRRKLLPISPAERQDSAVALPGHAQEPAAAPADLPDGLAPASGPR 176

Query: 169 -GYNRKRGVT--AFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEI 225
               R+ G +  A + +  GCD+ C+FC +P  RG  ISR  S V+ E R L   GV EI
Sbjct: 177 APLRRRLGTSPVASVKLASGCDRRCSFCAIPSFRGSFISRRPSDVLQETRWLAGQGVKEI 236

Query: 226 TLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLD 285
            L+ +N N   GK L G+      LL  L+E+ G+ R+R +   P +M   LI       
Sbjct: 237 MLVSEN-NTSYGKDL-GDIRLLETLLPELAEVDGIERVRVSYLQPAEMRPGLIDVLTSTP 294

Query: 286 VLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDD 345
            + PY  L  Q  +  +L++M R      +  ++++IR+  P+  + S+FIVGFPGE++ 
Sbjct: 295 KVAPYFDLSFQHSAPGVLRAMRRFGDTDRFLGLLEQIRAKAPEAGVRSNFIVGFPGESEA 354

Query: 346 DFRA-----TMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLRE 400
           D        T   +D IG      F YS   GT  +    ++ E   AERL  + +   E
Sbjct: 355 DVAELERFLTGARLDAIGV-----FGYSDEDGTEAAGYEGKLPEEEVAERLARVSRLAEE 409

Query: 401 QQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS 432
                 D  VG+ +EVL+E   +E+G  VGR+
Sbjct: 410 LVSQRADERVGETVEVLVESVDEEEGA-VGRA 440


>gi|58617513|ref|YP_196712.1| hypothetical protein ERGA_CDS_07860 [Ehrlichia ruminantium str.
           Gardel]
 gi|58417125|emb|CAI28238.1| Conserved hypothetical protein [Ehrlichia ruminantium str. Gardel]
          Length = 405

 Score =  145 bits (367), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 101/363 (27%), Positives = 175/363 (48%), Gaps = 39/363 (10%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V ++GC++N Y+S  +++         +   +  D+IV++TC +  +A  +V +   +IR
Sbjct: 4   VITFGCRLNFYESEVIKN--------NLKKAELDDVIVVHTCAVTSEAERQVKA---KIR 52

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
            L N+      ++ ++VAGC AQ                + P++Y  +P +++      +
Sbjct: 53  KLYNN----NANVKIIVAGCAAQ----------------LNPESYMSMPGVVKVLGNEDK 92

Query: 149 VVDTDYSVEDKF-------ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           +    Y   DK         R  I D          A + IQ GC+  CTFCV+   RG 
Sbjct: 93  LKYESYITADKVIVGNIGNSRTVIKDSIKQFPGKSRALIEIQNGCNHECTFCVITKARGN 152

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
             S  +  ++ + +  ++NG  E+   G +++ + G  + G++     +   L  I  L 
Sbjct: 153 NRSLHIEDIITQVKDCVNNGYNEVVFTGVDISDF-GIDIYGQRMLGVMIKRVLGAIPQLR 211

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           RLR ++    ++ D LI   G+    MP+LHL +QSG++ ILK M RRH   +  +  +R
Sbjct: 212 RLRLSSIDVAEIEDDLIDIIGNEPRFMPHLHLSLQSGNNLILKRMKRRHNREQVVEFCNR 271

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +  +R DI   +D IVGFP ET+D F  T+ L+++   +    F YS R GTP + M + 
Sbjct: 272 VSGMRKDIVFGADIIVGFPTETEDMFNDTVKLIEEANISYLHIFPYSAREGTPAARMPQV 331

Query: 382 VDE 384
             E
Sbjct: 332 SPE 334


>gi|330826148|ref|YP_004389451.1| 30S ribosomal protein S12 methylthiotransferase rimO
           [Alicycliphilus denitrificans K601]
 gi|329311520|gb|AEB85935.1| Ribosomal protein S12 methylthiotransferase rimO [Alicycliphilus
           denitrificans K601]
          Length = 463

 Score =  145 bits (367), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 127/485 (26%), Positives = 212/485 (43%), Gaps = 58/485 (11%)

Query: 14  VSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIR 73
           +S+ +     P+  FV S GC  N+ DS  +     ++GYE   +   ADL+++NTC   
Sbjct: 1   MSEALSPTKTPKIGFV-SLGCPKNLTDSELILTQLSAEGYETSKTFQGADLVIVNTCGFI 59

Query: 74  EKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCV-AQAE---GEEILRRSPIVNVVVG 129
           + A  +    +G         + + G   V+V GC+ A+A+   G  +    P V  V G
Sbjct: 60  DDAVRESLDTIGEA-------LADNGK--VIVTGCLGARADDGGGNLVKGVHPNVLAVTG 110

Query: 130 PQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT------AFLTIQ 183
           P       E++E       V        D F  L +V G +  + G+       A+L I 
Sbjct: 111 PHAAQ---EVMEH------VHQHLPKPHDPF--LDLVPGTFG-EAGIKLTPRHYAYLKIS 158

Query: 184 EGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA--------- 234
           EGC+  CTFC++P  RG  +SR +  V++EAR L + GV E+ ++ Q+ +A         
Sbjct: 159 EGCNHRCTFCIIPSMRGDLVSRPIGDVLNEARALFEGGVKELLVVSQDTSAYGVDVKYRT 218

Query: 235 --WRGKGLDGEKCTFSDLLYSLSEIKG-LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL 291
             W GK +          L +++   G  VRL Y   +P       +   G   +++PYL
Sbjct: 219 GFWDGKPVRTRLLELVQTLGAIARPYGAWVRLHYVYPYPSVDDIIPLMQEG---LVLPYL 275

Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351
            +P Q     +LK M R  +  +  + I R R + P++ + S FI GFPGET+++F   +
Sbjct: 276 DVPFQHSHPDVLKRMKRPASGEKNLERIQRWREMCPELVVRSTFIAGFPGETEEEFEHLL 335

Query: 352 DLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVG 411
             + +    +A  F YS   G   +++   +   ++ ER         E   +     VG
Sbjct: 336 QFLREAQIDRAGCFAYSNVRGAAANDLPGMLPMELREERRARFMAVAEEVSTARLQRRVG 395

Query: 412 QIIEVLIEKHGKEKGKLVGRSPWLQSVVLN-----------SKNHNIGDIIKVRITDVKI 460
           Q ++VL++K      K      W  +  ++           SK + +GD +K RI   + 
Sbjct: 396 QTLQVLVDKAVGLGKKGGVGRSWADAPEIDGLVHLLPPEKISKTYKVGDFVKARIVGTQG 455

Query: 461 STLYG 465
             L G
Sbjct: 456 HDLVG 460


>gi|188994127|ref|YP_001928379.1| putative Fe-S oxidoreductase [Porphyromonas gingivalis ATCC 33277]
 gi|238066441|sp|B2RHD7|RIMO_PORG3 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|188593807|dbj|BAG32782.1| putative Fe-S oxidoreductase [Porphyromonas gingivalis ATCC 33277]
          Length = 434

 Score =  145 bits (366), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 121/420 (28%), Positives = 198/420 (47%), Gaps = 44/420 (10%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDA----DLIVLNTC-HIREKAAEKV 80
           R  V + GC  N+ DS  +   F S GY      D A    +++V+NTC  I +   E V
Sbjct: 5   RVDVITLGCSKNLVDSEVLMRQFLSNGY--TVHHDPASVCGEIVVVNTCGFIGDAQEESV 62

Query: 81  YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140
            + L  +   K  RI   G L V+  GC+++   E++ +  P V+   G   + +L   L
Sbjct: 63  NTILEMVEAKKAGRI---GSLYVM--GCLSERFREDLKKEIPEVDAYYGKFDWKQLISHL 117

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT----AFLTIQEGCDKFCTFCVVP 196
            ++ + +                       NR++  T    A+L I EGCD+ C++C +P
Sbjct: 118 GKSYYAE---------------------AENRRKLTTPRHYAYLKISEGCDRSCSYCAIP 156

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT-FSDLLYSLS 255
              G   SR +  +V+E R L+ +G  E  L+ Q++  +   GLD       ++L   LS
Sbjct: 157 IITGRHRSRPMEDLVEEVRMLVKHGTREFQLIAQDLTFY---GLDLYGANRLAELTARLS 213

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
           +IKG+  LR   ++P      L+    +   +  YL + +Q  SD +L+ M RR T  E 
Sbjct: 214 DIKGVEWLRLHYAYPAQFPLDLLPVMRERPNVCKYLDMALQHISDPMLRRMRRRITKAET 273

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP- 374
            ++I+RIR+  P I + +  + G PGET+ DF   +  V  I + +  +F YS   GT  
Sbjct: 274 YELIERIRTEVPGIHLRTTLMTGHPGETERDFEELLQFVRDIRFERLGAFTYSHESGTYC 333

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPW 434
             N  + + E+VK ERL  L         + N+A +G  + V+I++   E G  VGR+ +
Sbjct: 334 DKNYQDDIPESVKQERLGELMAVQERISAAHNEAKIGSRLRVVIDR--AEDGFYVGRTEY 391


>gi|332528547|ref|ZP_08404535.1| ribosomal protein S12 methylthiotransferase [Hylemonella gracilis
           ATCC 19624]
 gi|332042058|gb|EGI78396.1| ribosomal protein S12 methylthiotransferase [Hylemonella gracilis
           ATCC 19624]
          Length = 486

 Score =  145 bits (366), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 124/457 (27%), Positives = 203/457 (44%), Gaps = 72/457 (15%)

Query: 14  VSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIR 73
            +  V     P+  FV S GC   + DS  +     ++GY+   +   ADL+++NTC   
Sbjct: 18  ATPAVASSSAPKVGFV-SLGCPKALTDSELILTQLSAEGYQTSKTFAGADLVIVNTCGFI 76

Query: 74  EKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAE---------GEEILRR-SPI 123
           + A ++    +G         + E G   V+V GC+             G  ++R+  P 
Sbjct: 77  DDAVKESLDTIGEA-------LAENGK--VIVTGCLGARTVGDGDDGQVGANLVRQMHPS 127

Query: 124 VNVVVGPQTYYRLPELLERARFGKRVVDTDY----SVEDKFERLSIVDGGYNRKRGVT-- 177
           V  V GP                + V+D  +       D F  L +V GG+  + G+   
Sbjct: 128 VLAVTGPHAT-------------QEVMDAVHLHLPKPHDPF--LDLVPGGFG-EAGLKLT 171

Query: 178 ----AFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVN 233
               A+L I EGC+  CTFC++P  RG  +SR +  V+ EA+ L + GV E+ ++ Q+ +
Sbjct: 172 PRHYAYLKISEGCNHRCTFCIIPSMRGDLVSRPVGDVLKEAKALFEGGVKELLVVSQDTS 231

Query: 234 A-----------WRGKGLDGEKCTFSDLLYSLSEIKG----LVRLRYTTSHPRDMSDCLI 278
           A           W GK +   K    DL+ +L E+       VRL Y   +P       +
Sbjct: 232 AYGVDVKYRTGFWDGKPV---KTRMLDLVQALGELAAEHGAWVRLHYVYPYPHVDDILPL 288

Query: 279 KAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVG 338
            A G   +++PYL +P Q     +L+ M R  +  +  + I R R + P++ + S FI G
Sbjct: 289 MAQG---LVLPYLDVPFQHSHPEVLRRMKRPASGEKNLERIQRWREICPELVVRSTFIAG 345

Query: 339 FPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKL 398
           FPGET+++F   +D V +    +A  F YSP  G   + +   + + ++ ER        
Sbjct: 346 FPGETEEEFAHLLDFVREAQIDRAGCFAYSPVRGAAANELPGALPDALREERRQRFMAVA 405

Query: 399 REQQVSFNDACVGQIIEVLIEKH---GKEKGKLVGRS 432
            E   +     VG  ++VL++     GK+ G  VGRS
Sbjct: 406 EEVSTTRLQRRVGATMQVLVDSAPGLGKKGG--VGRS 440


>gi|182435562|ref|YP_001823281.1| hypothetical protein SGR_1769 [Streptomyces griseus subsp. griseus
           NBRC 13350]
 gi|326776196|ref|ZP_08235461.1| Ribosomal protein S12 methylthiotransferase rimO [Streptomyces cf.
           griseus XylebKG-1]
 gi|238066607|sp|B1VXY2|RIMO_STRGG RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|178464078|dbj|BAG18598.1| conserved hypothetical protein [Streptomyces griseus subsp. griseus
           NBRC 13350]
 gi|326656529|gb|EGE41375.1| Ribosomal protein S12 methylthiotransferase rimO [Streptomyces cf.
           griseus XylebKG-1]
          Length = 493

 Score =  145 bits (366), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 128/455 (28%), Positives = 200/455 (43%), Gaps = 56/455 (12%)

Query: 23  VPQRFFVK--SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKV 80
           +P+R  V   + GC  N  DS  +     + G++ V    DAD+ V+NTC   E A +  
Sbjct: 1   MPERRTVALVTLGCARNEVDSEELAGRLAADGWDLVEDASDADVAVVNTCGFVEAAKKDS 60

Query: 81  YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140
              L    +LK+     G    VV  GC+A+  G+++    P  + V+G   Y  + + L
Sbjct: 61  VDALLEANDLKD----HGRTQAVVAVGCMAERYGKDLAEALPEADGVLGFDDYADISDRL 116

Query: 141 ER-------------------------------ARFGKRVVDTDYSVEDKFERLSIVDGG 169
           +                                A  G        + ED  E ++ V G 
Sbjct: 117 QTILNGGIHASHTPRDRRKLLPISPAERQDTAVALPGHAQEAPAPAPEDLPEGVAPVSGP 176

Query: 170 ---YNRKRGVT--AFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCE 224
                R+ G +  A + +  GCD+ C+FC +P  RG  ISR  S V+ E R L + GV E
Sbjct: 177 RAPLRRRLGTSPVASVKLASGCDRRCSFCAIPSFRGSFISRRPSDVLQETRWLAEQGVKE 236

Query: 225 ITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL 284
           + L+ +N N   GK L G+      LL  L+++ G+ R+R +   P +M   LI      
Sbjct: 237 VMLVSEN-NTSYGKDL-GDIRLLETLLPELADVDGIERIRVSYLQPAEMRPGLIDVLTST 294

Query: 285 DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETD 344
             + PY  L  Q  +  +L++M R      + +++D IRS  P     S+FIVGFPGET+
Sbjct: 295 PKVAPYFDLSFQHSAPGVLRAMRRFGDTDRFLELLDTIRSKAPQAGARSNFIVGFPGETE 354

Query: 345 DDFRA-----TMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLR 399
            D        T   +D IG      F YS   GT       ++D +  AERL  + +   
Sbjct: 355 ADLAELERFLTGARLDAIGV-----FGYSDEEGTEAVGYENKLDADTIAERLAHISQLAE 409

Query: 400 EQQVSFNDACVGQIIEVLIEK-HGKEKGKL-VGRS 432
           E      +  VG+ ++VL+E    +E G++ +GR+
Sbjct: 410 ELTSQRAEERVGETLQVLVESVESEEDGEVAIGRA 444


>gi|254382132|ref|ZP_04997494.1| conserved hypothetical protein [Streptomyces sp. Mg1]
 gi|194341039|gb|EDX22005.1| conserved hypothetical protein [Streptomyces sp. Mg1]
          Length = 495

 Score =  145 bits (366), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 130/439 (29%), Positives = 195/439 (44%), Gaps = 53/439 (12%)

Query: 23  VPQRFFVK--SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKV 80
           +P+R  V   + GC  N  DS  +     + G+E V    DAD+ V+NTC   E A +  
Sbjct: 1   MPERRTVALVTLGCARNEVDSEELAGRLAADGWELVEDAADADVAVVNTCGFVEAAKKDS 60

Query: 81  YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG----------- 129
              L    +LK+     G    VV  GC+A+  G+E+    P  + V+G           
Sbjct: 61  VDALLEANDLKD----HGKTQAVVAVGCMAERYGKELAEALPEADGVLGFDDYADISDRL 116

Query: 130 -------------PQTYYRLPELLERARFGKRVVDTDYSVE------DKFERLSIVDGGY 170
                        P+   +L  +   AR    V    ++ E      D  E L+   G  
Sbjct: 117 QTILNGGIHASHTPRDRRKLLPISPAARQDAEVALPGHAQEPEAAPADLPEGLAPASGPR 176

Query: 171 N--RKR---GVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEI 225
              R+R      A + +  GCD+ C+FC +P  RG  ISR  S V+ E R L + GV EI
Sbjct: 177 APLRRRLDKSPVASVKLASGCDRRCSFCAIPSFRGSFISRRPSDVLGETRWLAEQGVKEI 236

Query: 226 TLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLD 285
            L+ +N N   GK L G+      LL  L+E+ G+ R+R +   P +M   LI       
Sbjct: 237 MLVSEN-NTSYGKDL-GDIRLLETLLPELAEVDGIERVRVSYLQPAEMRPGLIDVLTSTP 294

Query: 286 VLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDD 345
            ++PY  L  Q  +  +L++M R      + +++D IR   P   + S+FIVGFPGE + 
Sbjct: 295 KVVPYFDLSFQHSAPNVLRAMRRFGDTDRFLELLDTIRGKAPQAGVRSNFIVGFPGEKES 354

Query: 346 DFRA-----TMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLRE 400
           DF+      T   +D IG      F YS   GT       ++DE+  AERL  +Q+   E
Sbjct: 355 DFKELERFLTHARLDAIGV-----FGYSDEDGTEAVTYEGKLDEDTIAERLAHMQRLAEE 409

Query: 401 QQVSFNDACVGQIIEVLIE 419
                 +  +G+ +EVL+E
Sbjct: 410 LTSQRAEERIGETLEVLVE 428


>gi|41614804|ref|NP_963302.1| hypothetical protein NEQ008 [Nanoarchaeum equitans Kin4-M]
 gi|40068528|gb|AAR38863.1| NEQ008 [Nanoarchaeum equitans Kin4-M]
          Length = 413

 Score =  145 bits (366), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 121/438 (27%), Positives = 209/438 (47%), Gaps = 36/438 (8%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + + +SYGC +N  D+L M+    +Q     N++++AD++V+N+C +++    K+   L 
Sbjct: 2   KVYFESYGCTLNKRDTLYMQ----AQIENTTNNLEEADVVVINSCIVKQPTETKI---LY 54

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNV-VVGPQTYYRLPELLERAR 144
           RI  LK    K      +V+ GC+     E  L+   + ++ +V      R+ E +ER  
Sbjct: 55  RINQLKKMGKK------IVLTGCMV---SEPYLKYKELQDISLVNIYNQDRIKEAIERTY 105

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G+RV+          E+  I            A + IQEGC   CT+C     R +  S
Sbjct: 106 KGERVLF--------LEKKKIYKEFARPLSKARAIIQIQEGCLWRCTYCGTKLARSMFYS 157

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
                +  E  + +  G+    L G +   + GK ++    + +DLL  L EI+G   +R
Sbjct: 158 YPPKLIKREIEEKLKQGIKIFYLTGPDTATY-GKDIN---YSLADLLKDLIEIEGDFYIR 213

Query: 265 YTTSHPR---DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
              ++P    +  D LI      + +  + HLPVQSGS+++LK MNR +T  EY+++I +
Sbjct: 214 VGMANPTFFLEQIDELIDVFKS-NKIFKFFHLPVQSGSNKVLKDMNRPYTIEEYKELIYK 272

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R   P     +D IVG+P ET++DF  T++LV +I +      ++  R GT   N L+Q
Sbjct: 273 LRKHFPLATYVTDIIVGYPTETEEDFEQTLELVREIKFDGINISRFWRRPGTIAWN-LKQ 331

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           +D  +   R+  L++   +     N   +    E +IE+ GK    +     + Q +V  
Sbjct: 332 LDPEIVTNRVKRLKEVFLQGAYERNKLWLNWEGEAIIEEKGKNNTWIAKNEMYKQIIV-- 389

Query: 442 SKNHNIGDIIKVRITDVK 459
             N+  G  IKV+I   +
Sbjct: 390 KGNYEEGQKIKVKIKKAR 407


>gi|313159539|gb|EFR58902.1| ribosomal protein S12 methylthiotransferase RimO [Alistipes sp.
           HGB5]
          Length = 432

 Score =  145 bits (366), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 129/454 (28%), Positives = 209/454 (46%), Gaps = 41/454 (9%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEKVYS 82
           ++  V + GC  N  DS  +     + GYE +   D  DA ++V+NTC     A ++   
Sbjct: 2   KKINVITLGCSKNTVDSEHLMARLAAAGYEVLFDSDRTDAKVVVINTCGFIGDAKQESID 61

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            + R    KN+    G    + V GC+++   +E+    P V+   G +T+  +   L  
Sbjct: 62  MILRAAAAKNA----GKIERLFVVGCLSERYADELRAELPEVDEFFGARTWDGIVRALGA 117

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           A         D ++E   ER       Y       A+L I EGC+  C +C +P  RG  
Sbjct: 118 AE--------DPALET--ERHLTTPKHY-------AYLKISEGCNWKCGYCAIPLIRGGH 160

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +S  + ++ +EARKL   GV E+ ++ Q+   + G  L G +   ++LL  L  I G+  
Sbjct: 161 VSVPMERLEEEARKLAAGGVKELIVIAQDTTYY-GLDLYGRR-MLAELLRRLCRIGGIEW 218

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R   ++P    D +I+       +  YL +P Q  SD  L +M RRHT  +   +I R+
Sbjct: 219 IRLHYAYPTAFPDEVIEVMASEPKICKYLDIPFQHISDAQLSAMQRRHTKADAYALIGRL 278

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE-Q 381
           R   PD+A+ +  +VG+PGET  DF    + V  + + +   F YS   GT  +  L+  
Sbjct: 279 REAIPDLALRTTLLVGYPGETQADFAELEEFVRDVRFERLGVFAYSEEEGTYSAQKLQDN 338

Query: 382 VDENVK---AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPW 434
           V E VK    ER++ LQ ++    +  N   VG+   VLI+   ++    VGR    SP 
Sbjct: 339 VPEEVKQQRVERIMALQNEI---SLENNLRRVGRTERVLID--SRQGDYYVGRTQYDSPE 393

Query: 435 L-QSVVLNSKNHNI--GDIIKVRITDVKISTLYG 465
           + Q +++ +    +  G    VRI       LYG
Sbjct: 394 VDQEILIPASEKRLLRGRFYDVRIDSAADYDLYG 427


>gi|241763703|ref|ZP_04761752.1| MiaB-like tRNA modifying enzyme YliG [Acidovorax delafieldii 2AN]
 gi|241367092|gb|EER61466.1| MiaB-like tRNA modifying enzyme YliG [Acidovorax delafieldii 2AN]
          Length = 463

 Score =  145 bits (366), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 133/488 (27%), Positives = 213/488 (43%), Gaps = 76/488 (15%)

Query: 14  VSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIR 73
           +S+ +     P+  FV S GC   + DS  +     ++GYE   + + ADL+++NTC   
Sbjct: 1   MSEALAPTKTPKVGFV-SLGCPKALTDSELILTQLSAEGYETSKTFEGADLVIVNTCGFI 59

Query: 74  EKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEE----ILRRSPIVNVVVG 129
           + A ++    +G         + E G   V+V GC+    GE     +    P V  V G
Sbjct: 60  DDAVKESLDTIGEA-------LAENGK--VIVTGCLGARAGEGGGNMVREMHPSVLAVTG 110

Query: 130 PQTYYRLPELLERARFGKRVVDTDY----SVEDKFERLSIVDGGYNRKRGVT------AF 179
           P                + V+D  +       D F  L +V G +    G+       A+
Sbjct: 111 PHAT-------------QEVMDAVHLNLPKPHDPF--LDLVPGSFGVA-GIKLTPKHYAY 154

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA----- 234
           L I EGC+  CTFC++P  RG  +SR +  V+ EA+ L + GV E+ ++ Q+ +A     
Sbjct: 155 LKISEGCNHRCTFCIIPSMRGDLVSRPVGDVLSEAKALFEGGVKELLVISQDTSAYGVDV 214

Query: 235 ------WRGKGLDGEKCTFSDLLYSLSEIKG----LVRLRYTTSHPRDMSDCLIKAHGDL 284
                 W GK +   K    +L+ +L EI       VRL Y   +P       + A G  
Sbjct: 215 KYRTGFWDGKPV---KTRTLELVQTLGEIAAPYGAWVRLHYVYPYPSVDEIIPLMAQG-- 269

Query: 285 DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETD 344
            +++PYL +P Q     +LK M R  +  +  + I R R   P+I I S FI GFPGET+
Sbjct: 270 -LVLPYLDVPFQHSHPDVLKRMKRPASGEKNLERIQRWREACPEIVIRSTFIAGFPGETE 328

Query: 345 DDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVS 404
            +F+  +D + +    +A  F YS   G   + +   +   V+ ER         E  ++
Sbjct: 329 AEFQHLLDFLREAQIDRAGCFAYSDVSGAVANELPGMLPLEVREERRARFMAVAEEVSIA 388

Query: 405 FNDACVGQIIEVLIEKH---GKEKGKLVGRS----PWLQSVVL------NSKNHNIGDII 451
                VG  ++VL++     G++ G  VGR+    P +   V        SK   +G+  
Sbjct: 389 KLQRRVGATMQVLVDSAPGLGRKGG--VGRTYADAPEIDGTVQLLPPEKISKTMKVGEFT 446

Query: 452 KVRITDVK 459
           K RI  V+
Sbjct: 447 KARIVAVQ 454


>gi|159045158|ref|YP_001533952.1| ribosomal protein S12 methylthiotransferase [Dinoroseobacter shibae
           DFL 12]
 gi|238065338|sp|A8LI17|RIMO_DINSH RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|157912918|gb|ABV94351.1| UPF0004 protein yliG [Dinoroseobacter shibae DFL 12]
          Length = 456

 Score =  145 bits (366), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 113/401 (28%), Positives = 181/401 (45%), Gaps = 41/401 (10%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC   + DS R+     ++GY        A+ +++NTC   + A  +    +G   + 
Sbjct: 33  SLGCPKALVDSERILTRLRAEGYAISPDYAGAEAVIVNTCGFLDSAKAESLEAIGEALS- 91

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
           +N R        V+V GC+  AE E I    P V  V GP  Y             ++V+
Sbjct: 92  ENGR--------VIVTGCLG-AEPEYITGHHPSVLAVTGPHQY-------------EQVL 129

Query: 151 DTDYSV----EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           D  ++      D F  L    G     R  + +L I EGC+  C FC++P  RG   SR 
Sbjct: 130 DAVHAAVPPSPDPFVDLLPASGVSLTPRHYS-YLKISEGCNHKCKFCIIPDMRGRLASRP 188

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-------GEKCTFSDLLYSLSEIKG 259
              VV EA KL++ GV E+ ++ Q+ +A+   G+D       G +   +DL   L  +  
Sbjct: 189 AHAVVREAEKLVEAGVRELLVISQDTSAY---GVDIRHAEDRGHRAHITDLARDLGGLGA 245

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
            VRL Y   +P       + A G   +++PYL +P Q      L+ M R   A +    I
Sbjct: 246 WVRLHYVYPYPHVRDLIPLMAEG---LVLPYLDIPFQHAHPDTLRRMARPAAAEKTLDRI 302

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
              R++ P+I + S FIVG+PGET+ +F+  +D +D+    +   F+Y    G   + + 
Sbjct: 303 AEWRAICPEITLRSTFIVGYPGETEAEFQTLLDWMDEAQLDRVGCFQYENVAGARSNALP 362

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
           + V   VK +R      K +    +   A VG  IEV++++
Sbjct: 363 DHVAPEVKQDRWERFMAKAQAISAAKLAAKVGSRIEVIVDE 403


>gi|261328871|emb|CBH11849.1| tRNA modification enzyme, putative [Trypanosoma brucei gambiense
           DAL972]
          Length = 535

 Score =  145 bits (366), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 124/456 (27%), Positives = 212/456 (46%), Gaps = 39/456 (8%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
            FV ++GC  NV D   M       GY   +    AD  +LN+C ++  + E   S + R
Sbjct: 53  IFVHTFGCGHNVSDGEYMAGQLVESGYNVTDEFGQADAYLLNSCTVKNPSEEHFVSMMNR 112

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           +R+             ++VAGCV QA+     ++   V+VV G ++  R+  +++ A  G
Sbjct: 113 VRDTGKP---------LIVAGCVPQADPTN--KQWGDVSVV-GVRSIDRVSYVVQEALQG 160

Query: 147 KRV----VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
             V       D    +    L  +D    R+      + I  GC   CT+C     RG  
Sbjct: 161 NCVRLLGETEDQRQSNDSNELPALDLPKVRRNKYIEIIPISVGCLNNCTYCKTKQARGDL 220

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS----EIK 258
            S  +  +VD  R+++ +GV EI L  ++  A+   G+D      +D++Y L     E++
Sbjct: 221 RSYPVEVIVDRVREVVRDGVKEIRLTSEDSGAY---GID----IGTDVVYLLQAVAVELE 273

Query: 259 GL-VRLRYTTSHPRDMSDCLIKAHGDLDVL-----MPYLHLPVQSGSDRILKSMNRRHTA 312
           G  V LR   S+P  +   L    G   VL       ++H+PVQSGSD IL++M R +T 
Sbjct: 274 GTDVMLRVGMSNPPYL---LRHVDGFATVLKHPNVYEFVHIPVQSGSDSILQTMLREYTV 330

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
            E+   ID IR+  P   +++D I  FPGE + +++ TM+L  +  +      ++ PR  
Sbjct: 331 EEFFMCIDSIRAAVPKATVATDIICAFPGEGESEWQETMELCKRAKFEVINITRFYPRRN 390

Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS 432
           TP + M +Q+  +V   R   L       + +F D+ VG++  V + +   +K  LVG +
Sbjct: 391 TPAAAM-KQIPTDVAKHRTTELTNFFNSYR-TF-DSMVGEVHNVTLLETAHDKHHLVGHT 447

Query: 433 PWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
                V+++     +G+ + V IT     ++ G ++
Sbjct: 448 KNYVQVLVDPAQARMGESVVVVITSATKYSVMGRVL 483


>gi|266623032|ref|ZP_06115967.1| tRNA-I(6)A37 modification enzyme MiaB [Clostridium hathewayi DSM
           13479]
 gi|288865210|gb|EFC97508.1| tRNA-I(6)A37 modification enzyme MiaB [Clostridium hathewayi DSM
           13479]
          Length = 286

 Score =  145 bits (365), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 87/244 (35%), Positives = 141/244 (57%), Gaps = 15/244 (6%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           F ++++GCQMN  DS ++  +  + G+   ++ ++AD ++ NTC +R+ A ++VY  LG 
Sbjct: 47  FHIETFGCQMNARDSEKLTGILEASGFTETDT-EEADFVLYNTCTVRDNANQRVYGRLGY 105

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELL-ERA 143
           +  +K    ++   +++ + GC+ Q E   E+I +    V+++ G    ++L EL+ ER 
Sbjct: 106 LNRIK----QKNPAMMIALCGCMMQEETVVEKIKKSYRFVDIIFGTHNIFKLAELISERM 161

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
              K VVD     +   E L   D  Y  K GV     I  GC+ FC++C+VPY RG E 
Sbjct: 162 DEKKMVVDIWKETDRIVEELP-TDRKYPFKSGVN----IMFGCNNFCSYCIVPYVRGRER 216

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR+   +V E R+L+ +GV E+ LLGQNVN++ GK L+ E  TF+ LL  +  I GL R+
Sbjct: 217 SRNPQDIVGEIRRLVADGVVEVMLLGQNVNSY-GKNLE-EPMTFAKLLQEVEAIDGLRRI 274

Query: 264 RYTT 267
           R+ T
Sbjct: 275 RFMT 278


>gi|193212430|ref|YP_001998383.1| MiaB-like tRNA modifying enzyme YliG [Chlorobaculum parvum NCIB
           8327]
 gi|238065322|sp|B3QMN0|RIMO_CHLP8 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|193085907|gb|ACF11183.1| MiaB-like tRNA modifying enzyme YliG [Chlorobaculum parvum NCIB
           8327]
          Length = 437

 Score =  145 bits (365), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 120/423 (28%), Positives = 199/423 (47%), Gaps = 28/423 (6%)

Query: 28  FVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA-EKVYSFLGR 86
           F+ S GC  N  DS R+     + G    + +D+A +I++NTC   E A  E +   L  
Sbjct: 12  FLLSLGCSKNTVDSERLTAQAVASGLTFTDDVDEASIILINTCGFIEDAKKESIDEMLAA 71

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           I   +   ++E     V V GC+ +   +E+    P V+   G +   +LP++L  A  G
Sbjct: 72  IGKKEEGIVRE-----VYVMGCLVELYRKELSEEMPEVDGWFGTR---QLPDVL--AAIG 121

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
                  +  E+ ++R  ++   +       AFL I EGC++ C+FC +P  RG  +S+ 
Sbjct: 122 A------HYCEELYDRRELLTPPH------YAFLKISEGCNRRCSFCSIPKIRGPYVSQP 169

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
           + Q++ EA  L + GV E+ L+ Q+++ + G  L G K   +DL   LS++ G   +R  
Sbjct: 170 IEQLLREAALLQEQGVRELNLIAQDISVY-GYDLYG-KPALNDLTLRLSDM-GFDWIRLL 226

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
            ++P +    +I        +  YL +P+Q  +DRILKSM R        ++ID IR   
Sbjct: 227 YAYPLNFPLEVIDTMRQRRNVCNYLDMPLQHINDRILKSMQRGIGRKGTEELIDAIRQKN 286

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           PDI + +  I G+P ET ++F   +D V +  + +   F Y      P   + + + +  
Sbjct: 287 PDIRLRTTMIAGYPSETREEFDELLDFVRQARFDRLGCFPYRHEEHAPAYALEDTISDKE 346

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHN 446
           K ER+  L +       S N    GQ + VLI++   E     GR+ +    V N     
Sbjct: 347 KEERVGELMELQESIAASLNRKLEGQTLTVLIDR--IEDNVAYGRTEYDAPEVDNDVIIE 404

Query: 447 IGD 449
           IGD
Sbjct: 405 IGD 407


>gi|257456035|ref|ZP_05621240.1| radical SAM domain protein [Treponema vincentii ATCC 35580]
 gi|257446558|gb|EEV21596.1| radical SAM domain protein [Treponema vincentii ATCC 35580]
          Length = 515

 Score =  145 bits (365), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 132/519 (25%), Positives = 227/519 (43%), Gaps = 99/519 (19%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA-EKVYSF 83
           +RFF+  +GC  N  D   +  +   +G+++    + ADLI++N+C   E A  E + S 
Sbjct: 3   KRFFLDQHGCAKNQVDGELLIGILTDRGWQKTPEPEKADLIIVNSCGFIEPAKRESIESV 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +       +++I        ++AGC+A+  G+         +   G     +LP L++R 
Sbjct: 63  ITARAAYPHAKI--------LLAGCLAERYGDVFKTEFEEADAFFGNGDLSQLPVLIDRL 114

Query: 144 RFGKRVVDTDYSV---EDKFERLSIVDGGYNR------KRGV-------------TAFLT 181
                  +   S    ++K++ +S    G++R      ++GV             +AF+ 
Sbjct: 115 FPDASPAEQQSSATLRQEKYQPVSPT--GHSRPFLKPAQKGVCCGQRPELLNFPRSAFIK 172

Query: 182 IQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------ 235
           I EGC+  C+FC +P  RG   SR  + +V E +  +  G  E  L+GQ++  +      
Sbjct: 173 ITEGCNNCCSFCAIPLIRGSVRSRPAADIVSEIQSFVRQGYKEFNLIGQDLAVYEAAPPA 232

Query: 236 ------------------------RGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPR 271
                                   R   L G     + LL+++S IKG   +R    HP 
Sbjct: 233 DAIDRPLPLKTEAEAEANKAETNKRKPKLSG----LAQLLHAISGIKGQFSVRLLYIHPD 288

Query: 272 DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV-----R 326
                ++         +PY  +P QSGSD I+++MNR  +A  Y  +I+ IR+       
Sbjct: 289 HFPLDILPVMTADTRFLPYFDIPFQSGSDPIIRAMNRCGSAEAYLNLIENIRAAFRSAES 348

Query: 327 P--DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           P  +  I + F+ GFPGET  DF  T   +  +    + +F YS   GT  ++M +QV  
Sbjct: 349 PYGEAVIRTTFLTGFPGETQADFERTAAFLQAVQSLWSGAFAYSQEEGTKAADMKKQVPA 408

Query: 385 NVKAER---LLCLQKKLREQQV-SFNDACVGQIIEVLIEKHGKEKGKL-----VGRSPWL 435
            +  +R   L  LQ K+ EQ++ SF       +IE +I +    +        +GR+ W 
Sbjct: 409 KIAEQRKAALNELQLKITEQKLASFCGLETNVLIEEIIPQDKSSEDSTQGCIALGRA-WF 467

Query: 436 Q------SVVLN-------SKNHNI--GDIIKVRITDVK 459
           Q      +VV+N       S+   I  G +++VRIT ++
Sbjct: 468 QAPEVDGAVVVNFSEAQKDSEGQPITAGSLVRVRITALR 506


>gi|284163849|ref|YP_003402128.1| MiaB-like tRNA modifying enzyme [Haloterrigena turkmenica DSM 5511]
 gi|284013504|gb|ADB59455.1| MiaB-like tRNA modifying enzyme [Haloterrigena turkmenica DSM 5511]
          Length = 417

 Score =  145 bits (365), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 124/449 (27%), Positives = 204/449 (45%), Gaps = 40/449 (8%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R+ +++YGC  N  +S  +E      G+ RV+  D+AD+ +LNTC + EK      + L 
Sbjct: 3   RYHIETYGCTSNRGESREIERRLRDAGHYRVDGPDEADVAILNTCTVVEKTER---NMLR 59

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R   L     +E  DL +   GC+A A+GEE  R + +   V+    +  +PE +     
Sbjct: 60  RAEELS----EETADLFIT--GCMALAQGEE-FRAADVDGQVL---HWDEVPEAVTNGEC 109

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                D +           I+DG       V   L I  GC   C++C+     G   S 
Sbjct: 110 PTTTPDAE----------PILDG-------VVGILPIARGCMSDCSYCITKQATGKIDSP 152

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            + + V++AR LI  G  EI + GQ+   +   G D  +     LL  +  I+G  R+R 
Sbjct: 153 PIEENVEKARALIHAGAKEIRITGQDTGVY---GWDEGERKLHRLLSEICAIEGDFRVRV 209

Query: 266 TTSHPRDMS---DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
             ++P+ +    + L     + + L  +LH PVQSGS+ +L  M R+H   EY ++++  
Sbjct: 210 GMANPKGVHGIREELAAVFAENEELYDFLHAPVQSGSNDVLGDMRRQHQVDEYVEVVETF 269

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
                   +S+DFIVGFP ETD D   +M L+ +    +    ++S R GT  + M + +
Sbjct: 270 DDALDYWTLSTDFIVGFPTETDRDHAQSMALLRETRPEKINVTRFSKRPGTDAAEM-KGL 328

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIE-VLIEKHGKEKGKLVGRSPWLQSVVLN 441
              VK ER   + +  RE         VG++ E  L+ + G         S + Q +V N
Sbjct: 329 GGTVKKERSKEMSEVKREIVREAYADMVGEVREDCLVVEEGTADSVKCRDSAYRQVIVQN 388

Query: 442 SKNHNI--GDIIKVRITDVKISTLYGELV 468
           +  + I  GD + + +   +    +GE V
Sbjct: 389 ASEYGIEPGDFVDLEVAAHETMYAFGEPV 417


>gi|94987120|ref|YP_595053.1| 2-methylthioadenine synthetase [Lawsonia intracellularis
           PHE/MN1-00]
 gi|123082153|sp|Q1MQJ5|RIMO_LAWIP RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|94731369|emb|CAJ54732.1| 2-methylthioadenine synthetase [Lawsonia intracellularis
           PHE/MN1-00]
          Length = 440

 Score =  145 bits (365), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 124/441 (28%), Positives = 207/441 (46%), Gaps = 41/441 (9%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYER--VNSMDDADLIVLNTCH-IREKAAEKVYSFLGRI 87
           S GC  N  D+   E +  S G     ++  ++AD + +NTC  I     E V + L  +
Sbjct: 14  SLGCPKNRVDT---ERLLGSLGIPLTFIDYPNNADFVFINTCSFIHTAVQESVNTILQLV 70

Query: 88  RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRS-PIVNVVVGPQTYYRLPELLERARFG 146
            +++    K      ++VAGC     GE+IL++  P V++ +  +      E +  A   
Sbjct: 71  ADVEELSEKP----FIIVAGCFVGRYGEKILKKDIPEVDLWLDNKEIESWNEQILLA--- 123

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
              + + + V D+     I+  G +      A+L I +GC   C+FC +P  RG   S S
Sbjct: 124 -LNIKSTFLVTDR-----IITTGKSY-----AWLKISDGCQHSCSFCTIPSIRGSLHSYS 172

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
           + ++V E+R ++D GV E+ L+ Q+V AW G+ L         LL  L  + GL RLR  
Sbjct: 173 IDELVKESRHILDQGVKELVLVAQDVTAW-GRDLPN-NYGLKTLLDHLLVLDGLKRLRLM 230

Query: 267 TSHPRDMS-DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
             +P  ++ D L+      +  +PY  +P+Q     IL  M R   A   R++ID IRSV
Sbjct: 231 YLYPTGLTKDFLLYLKSVGEPFVPYFDVPIQHAHPDILSCMGRPF-AKNPRKVIDNIRSV 289

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P+  + +  I GFPGET+         +++I +     F Y    GTP + M  QV E 
Sbjct: 290 FPEAVLRTSVITGFPGETEGHHVYLSKFIEEIKFQHLGIFSYVAEAGTPAAVMPNQVGEK 349

Query: 386 VKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQS----- 437
           VK +R   L+ +Q K+ E+ +      VG+ + ++++    E  +L     W Q+     
Sbjct: 350 VKEQRKAELMEIQLKISEKWLK---NFVGKRLSLIVDNVHPEWPELYTGRAWFQAPEVDG 406

Query: 438 -VVLNSKNHNIGDIIKVRITD 457
            V ++  N   G++I+  I +
Sbjct: 407 MVYISGPNIKPGELIEADIME 427


>gi|72161199|ref|YP_288856.1| hypothetical protein Tfu_0795 [Thermobifida fusca YX]
 gi|123733592|sp|Q47RT4|RIMO_THEFY RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|71914931|gb|AAZ54833.1| Conserved hypothetical protein [Thermobifida fusca YX]
          Length = 483

 Score =  145 bits (365), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 128/468 (27%), Positives = 204/468 (43%), Gaps = 57/468 (12%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEKVYSFLGRIR 88
           + GC  N  DS  +     + G+  V++ D   AD++++NTC   + A E        I 
Sbjct: 11  TLGCARNEVDSEELAGRLAADGWTLVDADDGEKADVVIVNTCGFIQAAKED------SIE 64

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
            L N+   EGG   VV AGC+A+  G E+    P   V+     Y  + E LE    G+ 
Sbjct: 65  TLLNA--AEGG-ARVVAAGCLAERYGAELAEAMPEAQVISF-DDYAHISERLEDVLAGRP 120

Query: 149 VVDTDYSVEDKFERLSI--VDGGYNRKRGVTAFLT------------------------- 181
           +  T ++  D+   L I  VD     K  V   LT                         
Sbjct: 121 L--TPHTPRDRRTLLPITPVDRSQAAKNHVPGHLTFGEEITPLPDGVAPASGPTIPRLRL 178

Query: 182 ---------IQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNV 232
                    I  GCD+ C+FC +P  RG  +SR    V+ EA  L   GV E+ L+ +N 
Sbjct: 179 TGGPVANLKIASGCDRRCSFCAIPSFRGAYLSRKPEDVLREAEWLAGQGVRELFLVSENS 238

Query: 233 NAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLH 292
            ++ GK L G+      LL  L+ I G+ R+R +   P ++   LI        ++PY  
Sbjct: 239 TSY-GKDL-GDVRALEKLLPRLAAIPGIERVRVSYLQPAEVRPGLIDVLTGTPGVVPYFD 296

Query: 293 LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352
           L  Q  S  +L+ M R      + +++ RIR+  P+  I S+FIVGFPGETD+DF   + 
Sbjct: 297 LSFQHASGPLLRRMRRFGDRERFLELVARIRAKAPEAGIRSNFIVGFPGETDEDFAELVA 356

Query: 353 LVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQ 412
            +++        F YS   GT  +    ++ E    ER+  L +   E      +  +G 
Sbjct: 357 FLEQARLDAIGIFGYSDEDGTEAAGFDGKLPEETIKERVDQLNQLAEELMAQRAEERIGS 416

Query: 413 IIEVLIE---KHGKEKGKLVGRSPWL--QSVVLNSKNHNIGDIIKVRI 455
            I+VL+E     G  +G+   ++P +   +++      ++GDI+   +
Sbjct: 417 TIDVLVEDVLDDGAYEGRAAHQAPEVDGSTILYADTALHVGDIVPATV 464


>gi|207109287|ref|ZP_03243449.1| putative ATP-binding protein [Helicobacter pylori HPKX_438_CA4C1]
          Length = 207

 Score =  145 bits (365), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 76/190 (40%), Positives = 116/190 (61%), Gaps = 3/190 (1%)

Query: 213 EARKLIDNGVCEITLLGQNVNAWRGKGLDGE--KCTFSDLLYSLSEIKGLVRLRYTTSHP 270
           EA KL +NG  E+ LLGQNVN + G     E  K  FSDLL  LSEI+G+ R+R+T+ HP
Sbjct: 2   EAEKLANNGTKELMLLGQNVNNY-GTRFSSEHAKVDFSDLLDKLSEIQGIERIRFTSPHP 60

Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330
             M+D  ++       +   +H+P+QSGS  +LK M R ++   +   ++R++++ P++ 
Sbjct: 61  LHMNDAFLERFAKNPKVCKSIHMPLQSGSSAVLKMMRRGYSKEWFLNRVERLKALVPEVG 120

Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER 390
           IS+D IVGFP E+D DF  TM++++K+ +   +SF YSPR  T      E+V   V + R
Sbjct: 121 ISTDIIVGFPNESDKDFEDTMEVLEKVRFDTLYSFIYSPRPFTEAGAWKERVPLEVSSSR 180

Query: 391 LLCLQKKLRE 400
           L  LQ + +E
Sbjct: 181 LERLQNRHKE 190


>gi|326388653|ref|ZP_08210246.1| MiaB-like tRNA modifying enzyme [Novosphingobium nitrogenifigens
           DSM 19370]
 gi|326206904|gb|EGD57728.1| MiaB-like tRNA modifying enzyme [Novosphingobium nitrogenifigens
           DSM 19370]
          Length = 405

 Score =  145 bits (365), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 120/410 (29%), Positives = 185/410 (45%), Gaps = 46/410 (11%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V + GC++N+ +S  +  M  +   ER         +V+N+C +  +A  +    + R+R
Sbjct: 7   VVTLGCRLNLAESDAIRAML-AAAPERT--------VVVNSCAVTAEAVRQSRRAIRRLR 57

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
                      D  +VV GC A    +     + +  VV  P            A    R
Sbjct: 58  RAHP-------DARLVVTGCAATITPDIFSAMAEVDAVVANPDKL---------APASWR 101

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
             +     E    RLS         R   AF+ +Q GCD  CTFC++P  RG  +S  ++
Sbjct: 102 TDEHAPVSESPSARLS--------DRHTRAFVPVQTGCDHACTFCIIPLGRGHSVSTPVA 153

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGL----DGEKCTFSDLLYS-LSEIKGLVRL 263
           +V+      +  GV EI L G +V  W G  L    +G      DL+ + L+    L RL
Sbjct: 154 RVLRAIEAHLALGVNEIVLTGVDVTGW-GADLAPKPEGGMPRLGDLVGAILAHFPDLPRL 212

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R ++    ++ D L +       +MP++HL +QSG D +LK M RRH+  +   +I+R+R
Sbjct: 213 RLSSLDGVEIDDRLFEILTGEPRVMPHIHLSLQSGDDMVLKRMKRRHSRGQALFLIERLR 272

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
             RPDIAI +D I GFP ET+      + L+   G      F YSPR GTP + M   VD
Sbjct: 273 LYRPDIAIGADIIAGFPTETEAMHANNLSLIAAAGIVHGHIFPYSPRPGTPATRM-PAVD 331

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSP 433
                ER   L++ +  ++ ++    +G+  EVL E+ G       G SP
Sbjct: 332 PAQVRERAAQLREAVAAERAAWLHGLIGRPREVLAERDG------TGHSP 375


>gi|301111844|ref|XP_002905001.1| CDK5 regulatory subunit-associated protein 1 [Phytophthora
           infestans T30-4]
 gi|262095331|gb|EEY53383.1| CDK5 regulatory subunit-associated protein 1 [Phytophthora
           infestans T30-4]
          Length = 624

 Score =  145 bits (365), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 116/364 (31%), Positives = 181/364 (49%), Gaps = 39/364 (10%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIRE--KAAEKVYS 82
           Q  ++K+YGC  NV DS  M+ +  S GY      D A L +LN+C +++  +AA    +
Sbjct: 61  QLIWIKTYGCSHNVSDSEYMQGVLASYGYRFTQDPDAAQLWLLNSCTVKDPSQAAFMHLA 120

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG-----EEILRRSPIVNVVVGPQTYYRLP 137
             GR +N             VVVAGCV QA+      EE+         +VG Q   R+ 
Sbjct: 121 VKGRKQNKA-----------VVVAGCVPQADRHLKGLEEV--------SIVGIQQVDRVV 161

Query: 138 ELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197
           E++E    G  V     +      RL  +D    RK  +   + +  GC   CT+C   +
Sbjct: 162 EVVEETLKGHTVRLLAKN------RLPELDLPKIRKNPMVEIIPLSTGCLGACTYCKTRH 215

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257
            RG   S +   +V  A+ +I+ GV EI L  ++  A+   G+D        L+  L E+
Sbjct: 216 ARGKLGSYTPEAIVSRAQTVINEGVTEIWLSSEDTGAY---GIDI-GTDLPTLMRKLLEV 271

Query: 258 -KGLVRLRYTTSHPRDMSDCL--IKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
               + LR   ++P  + D L  I    + + +  +LH+PVQSGSD +L +MNR +TA E
Sbjct: 272 VPDGIMLRVGMTNPPYILDHLDAIAEVLNHERVYSFLHVPVQSGSDDVLLAMNREYTAGE 331

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
           +R++ D + +  PD+ +++D I GFP ET++ F  TM+LVDK  +      ++ PR GTP
Sbjct: 332 FRRVADELLAKVPDLTLATDIICGFPTETEEHFDETMELVDKYRFHIMNISQFYPRPGTP 391

Query: 375 GSNM 378
            + M
Sbjct: 392 AAKM 395


>gi|223039951|ref|ZP_03610234.1| conserved hypothetical protein [Campylobacter rectus RM3267]
 gi|222878819|gb|EEF13917.1| conserved hypothetical protein [Campylobacter rectus RM3267]
          Length = 431

 Score =  144 bits (364), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 111/416 (26%), Positives = 201/416 (48%), Gaps = 38/416 (9%)

Query: 11  AHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC 70
           A++ S +  Q    ++ F K++GC+ N+YD+  M+   + + Y+ V+  ++AD++V+N+C
Sbjct: 3   ANLNSNLTTQEPRREKVFFKTFGCRTNIYDTELMKS--YVKDYDIVSDENEADIVVVNSC 60

Query: 71  HIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGP 130
            +   A     S++  I+       K G    V++ GC A ++G+E+  +S +  V+ G 
Sbjct: 61  TVTNSADSGARSYINGIK-------KRGAR--VILTGCGAVSKGKELFSKSAVFGVI-GA 110

Query: 131 QTYYRLPELLERARFGKRVVDTDYSVEDKFE--RLSIVDGG--YNRKRGVTAFLTIQEGC 186
                +  LL+             S +  FE   L  +D     N +    AF+ IQEGC
Sbjct: 111 SKKEDINALLK-------------SQDPFFELGNLKSIDKNIVTNYENHTKAFIKIQEGC 157

Query: 187 DKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT 246
           D  C++C++P  RG   S     ++ EA+ L  NG  E+ L G N+ ++   G D    +
Sbjct: 158 DFACSYCIIPAVRGKARSMDEEAILREAKILAYNGYNELVLTGTNIGSY---GKD-TGSS 213

Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306
              LL  L ++ G+ R+R  +  P  + +   +   +   L  +LH+ +Q  S+ +L+ M
Sbjct: 214 LGRLLGRLGKVGGIKRIRLGSIEPSQIDESFREILRE-SWLERHLHIALQHTSEAMLRIM 272

Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
            RR+ A+   ++   +  +    A+ +D+IVG PGE+++ +   +    K        F 
Sbjct: 273 RRRNQAFRDLELFLELSEM--GFALGTDYIVGHPGESEEIWSEALVNFKKFPLTHLHCFA 330

Query: 367 YSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSF--NDACVGQIIEVLIEK 420
           YSPR GT  ++M   V  +V   RL  L++ + E    F    A  G  + VL+E+
Sbjct: 331 YSPRTGTHSADMKMDVSGDVAKARLKTLKQIVAENNFKFRQEHAKKGGSLNVLVEQ 386


>gi|310814756|ref|YP_003962720.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Ketogulonicigenium
           vulgare Y25]
 gi|308753491|gb|ADO41420.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Ketogulonicigenium
           vulgare Y25]
          Length = 459

 Score =  144 bits (364), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 122/452 (26%), Positives = 206/452 (45%), Gaps = 42/452 (9%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC   + DS R+     ++GY        AD +++NTC   + A  +    +G     
Sbjct: 36  SLGCPKALVDSERILTRLRAEGYAISPDYAGADAVIVNTCGFLDSAKAESLEAIGEA--- 92

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               ++E G   V+V GC+  AE E I    P V  V GP  Y ++ + +  A       
Sbjct: 93  ----LQENGK--VIVTGCLG-AEPEYITGVHPKVMAVTGPHQYEQVLDAVHVAVPPS--- 142

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
                  D F  L    G     R  + +L I EGC+  C FC++P  RG  +SR    +
Sbjct: 143 ------PDPFVDLLPAAGIKLTPRHYS-YLKISEGCNHKCKFCIIPDMRGRLVSRPAFAI 195

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLD-------GEKCTFSDLLYSLSEIKGLVRL 263
           V EA KL+ +GV E+ ++ Q+ +A+   G+D       G +   +DL   L  +   VR+
Sbjct: 196 VREAEKLVQSGVKELLVISQDTSAY---GVDLKYATERGHRAHITDLARDLGSLGAWVRM 252

Query: 264 RYTTSHP--RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
            Y   +P  RDM   +        +++PYL +P Q     +L+ M R   A +    I  
Sbjct: 253 HYVYPYPHVRDMIPLMADG-----LILPYLDIPFQHAHPDVLRRMARPAAAAKTLDEIAA 307

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
            R + PDI + S FIVG+PGET+ +F+  +D +D+    +   F+Y    G   + + + 
Sbjct: 308 WRDICPDITLRSTFIVGYPGETEAEFQTLLDWLDEAQLDRVGCFQYENVAGARSNLLPDH 367

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE--KHGKEKGKLVGRSPWLQSVV 439
           V + VK +R     +K +    +   A VGQ ++V+I+  + G    +    +P +   +
Sbjct: 368 VPDEVKQDRWNRFMEKAQAISAAKLQAKVGQQMDVIIDEIEDGVATCRTKADAPEIDGNL 427

Query: 440 L---NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 +  ++GDI++V + + +   L+G  V
Sbjct: 428 FIDEGVERLSVGDIVRVTVDEAEDYDLWGTPV 459


>gi|224418140|ref|ZP_03656146.1| 2-methylthioadenine synthetase [Helicobacter canadensis MIT
           98-5491]
 gi|253827467|ref|ZP_04870352.1| 2-methylthioadenine synthetase [Helicobacter canadensis MIT
           98-5491]
 gi|313141675|ref|ZP_07803868.1| tRNA modifying enzyme [Helicobacter canadensis MIT 98-5491]
 gi|253510873|gb|EES89532.1| 2-methylthioadenine synthetase [Helicobacter canadensis MIT
           98-5491]
 gi|313130706|gb|EFR48323.1| tRNA modifying enzyme [Helicobacter canadensis MIT 98-5491]
          Length = 423

 Score =  144 bits (364), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 117/408 (28%), Positives = 201/408 (49%), Gaps = 49/408 (12%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMF--FSQG-YERVNSMDDADLIVLNTCHIREKAAEKV 80
           P+ FF K++GC+ N++D+  M      FSQ  YE     +D+D+IV+N+C +   A   V
Sbjct: 4   PKVFF-KTFGCRTNLFDTQVMIHSLKDFSQTPYE-----EDSDIIVVNSCTVTNGADSGV 57

Query: 81  YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140
            S++ R++N       EG  +     GC  + +G+++L++  IV    G      + E+L
Sbjct: 58  RSYINRLQN-------EGKKIFFT--GCGVKTQGQDLLQKGLIVGAF-GHSYKESINEIL 107

Query: 141 ERARFGKRVVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
           +R +        ++ +E   E L  +I+     + R   AF+ IQEGCD  C++C++P  
Sbjct: 108 KRTQ--------NFYLEGDLESLDRNIISDFIGKSR---AFIKIQEGCDFACSYCIIPSV 156

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258
           RG   S   ++++++  KL  NG  E  L G N+ +W   G D  +   + LL S+  I 
Sbjct: 157 RGKARSFEKNKIINQITKLTQNGFSEFILTGTNMGSW---GKDSNE-NLTSLLESICAIP 212

Query: 259 GLVRLRYTTSHP----RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
            + RLR  +  P    +D  D L     D   +  +LH+ +Q  S  +LK MNR++T  +
Sbjct: 213 EVKRLRLGSLEPSQITQDFLDFL-----DHPKIERHLHIALQHTSPFMLKLMNRQNTFEK 267

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
             ++ + +   +   A+ SDFIVG P E+ + +                SF YSPR GT 
Sbjct: 268 DLELFNTL--AKKGFALGSDFIVGHPQESQEVWEEAFSNFALFPLTHLHSFIYSPRSGTF 325

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFND--ACVGQIIEVLIEK 420
            +++ E+V  ++   R   ++ K+ E   +F    +   + I VLIE+
Sbjct: 326 SASLKERVSGDISKIRKKQIEAKVTENNFAFRQKLSKANKPISVLIEE 373


>gi|160901669|ref|YP_001567250.1| MiaB-like tRNA modifying enzyme [Petrotoga mobilis SJ95]
 gi|160359313|gb|ABX30927.1| MiaB-like tRNA modifying enzyme [Petrotoga mobilis SJ95]
          Length = 434

 Score =  144 bits (364), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 111/400 (27%), Positives = 199/400 (49%), Gaps = 26/400 (6%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERV--NSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           ++GC+MN  +S  M +   S  ++ V    M  +D+ VLNTC +  +A  KV   + R++
Sbjct: 9   TFGCKMNQAESQAMAEKL-SPHFDIVFEEKMGKSDIYVLNTCAVTSEAERKVRQTIRRLK 67

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-ERARFGK 147
                  K   +  ++  GC + ++ EE+ +     ++V+G     ++  LL E   +  
Sbjct: 68  -------KSNENSKIIATGCYSVSDPEELKKVG--ADLVLGNLEKKQIDRLLCEEGIYSD 118

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRS 206
           +     +   +K++ L   +   +R R    FL I+EGC   CTFC + + RG++I S  
Sbjct: 119 KHF---WFHNEKYDILVPNEPYGDRTR---IFLPIEEGCINSCTFCKIRFLRGLKIVSLP 172

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL--SEIKGLVRLR 264
             +V+    K I+ G  EI L G N+  +   G+D  + T  +LL  +  S     +R+R
Sbjct: 173 TEEVIKSIEKFIEKGYKEIVLTGTNLGYY---GMDNSE-TLEELLNQIGKSFADKEIRIR 228

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
            T+ +P  ++D L        +   ++HL +Q  SD+IL+SM+R++        I+ +R 
Sbjct: 229 ITSLYPEIITDNLSTILNSYPIFEKHIHLSIQHFSDKILQSMHRKYNRKMIYTAIENLRK 288

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
                +I+ D IVGFPGE ++D R   D ++++   +  SF+YS R GT  + M  Q+  
Sbjct: 289 YDSKFSITCDLIVGFPGEDEEDLRILFDSIEELKVLKVHSFRYSLREGTVAAKMQNQIPG 348

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE 424
           N K +RL  + K     + ++ +  +G  ++VL E   K+
Sbjct: 349 NEKKDRLSQMDKIADLSRKNYLNDMLGSRVKVLTESSSKK 388


>gi|326330088|ref|ZP_08196400.1| 2-methylthioadenine synthetase [Nocardioidaceae bacterium Broad-1]
 gi|325952098|gb|EGD44126.1| 2-methylthioadenine synthetase [Nocardioidaceae bacterium Broad-1]
          Length = 493

 Score =  144 bits (364), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 131/476 (27%), Positives = 215/476 (45%), Gaps = 36/476 (7%)

Query: 12  HMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCH 71
               Q  DQ +V     + + GC  N  DS  +     + G+  V   D+AD +V+NTC 
Sbjct: 16  QQADQKADQKVV--SVAMVTLGCTRNEVDSEELAGRLTAGGFRLVADPDEADTVVVNTCG 73

Query: 72  IREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVA-GCVAQAEGEEILRRSPIVNVVVGP 130
             E+A +     L     L+ + +KE G    VVA GC+A+  G+++    P  + V+G 
Sbjct: 74  FVEQAKKDSVDTL-----LEAADLKETGKAQAVVAVGCMAERYGKDLAAELPEADAVLGF 128

Query: 131 QTYYRLPELLERARFG----------KRVVDTDYSVEDKFERLSI--------VDGGYNR 172
             Y  +   L     G          +R++     VE     +S+        V G   R
Sbjct: 129 DDYPDIAAKLRSILSGETHHPHTPQDRRLLLPISPVERDASAISVPGMAAVDQVPGFAGR 188

Query: 173 KR---GVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLG 229
            R      A L +  GCD+ CTFC +P  RG  +SR  S V+ EA+ L + GV E+ L+ 
Sbjct: 189 TRLDDAPWAPLKLASGCDRRCTFCAIPQFRGSFVSRRPSDVLHEAQWLAEQGVKELFLVS 248

Query: 230 QNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMP 289
           +N  ++ GK L G+      LL  L+ I G+ R+R +   P +    L+K       + P
Sbjct: 249 ENSTSY-GKDL-GDIRLLETLLPELAGIDGIERVRVSYLQPAETRPDLLKVIATTPGVTP 306

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           Y  L  Q  S+ +L+ M R      +  ++++IR   P+  + S+ IVGFPGET++D   
Sbjct: 307 YFDLSFQHASNAVLRRMKRFGDPESFLGLLEQIRGYAPEAGVRSNVIVGFPGETEEDLEI 366

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGT--PGSNMLEQVDENVKAERLLCLQKKLREQQVSFND 407
             D +          F YS   GT   G +   ++DE+    R+  + + + E  V   +
Sbjct: 367 LTDFLVAARMDVTGVFGYSDEEGTEAAGFDASLKLDEDEIRARVEHVNELVEELTVQRAE 426

Query: 408 ACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTL 463
             +G+ + VL+E+     G++ GR+   Q   ++      GD+  VR  D+  +T+
Sbjct: 427 ERIGEQVVVLVEE--TSDGEIWGRAAH-QGPEVDGMTALEGDVDGVRPGDLVTATV 479


>gi|325971811|ref|YP_004248002.1| MiaB-like tRNA modifying enzyme [Spirochaeta sp. Buddy]
 gi|324027049|gb|ADY13808.1| MiaB-like tRNA modifying enzyme [Spirochaeta sp. Buddy]
          Length = 437

 Score =  144 bits (364), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 116/399 (29%), Positives = 183/399 (45%), Gaps = 29/399 (7%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V + GC++N  +S  + D F  +G+  V     ADL V+NTC +  KA +K    + +  
Sbjct: 5   VYTLGCRLNQCESEAIADSFAKEGFTIVEEQVPADLYVVNTCTVTSKAEQKARRMIRKFA 64

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
            L  +          +  GC AQ   +E+   S   NV+V P         L        
Sbjct: 65  ELAPT----------LATGCYAQVNEQELKELSD--NVIVVPLEKKAHLLKLALHLKACL 112

Query: 149 VVDTDYSVEDKFERLSIVDG--------GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           V   D     K   LS  DG          +      A+L IQ+GCD  C +C V   RG
Sbjct: 113 VSGMDL----KGGCLSFSDGKASVFDYDAASFSYHSRAYLKIQDGCDNSCAYCRVHIARG 168

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
             +S    QV++ A  L  +G  EI L G N+  +  +     +     L   L+++   
Sbjct: 169 KAVSLQTEQVIERALALEASGFQEIMLTGVNLTMYDHQ----GEGLGGLLEKLLAKLSSS 224

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
           VR+R ++  P  + D L+    D   + P+ H+PVQSGSD ILK ++R +T  E   I+D
Sbjct: 225 VRIRLSSMEPDHIDDRLLDVLTDRR-MQPHFHIPVQSGSDHILKHVDRHYTISELSVILD 283

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           R+R  + D  +++D I G PGE ++DF AT   V    ++    F +SPR  T      +
Sbjct: 284 RLRKAKNDPFLAADIITGLPGEREEDFAATRQFVIDQQFSFLHVFPFSPRPDTVLYKAKD 343

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419
           +V E+++ ER L L+    +   ++    VG+  EV+++
Sbjct: 344 RVTESLRDERALELRTISEQLHDAYRKRQVGKRTEVILQ 382


>gi|300710670|ref|YP_003736484.1| MiaB-like tRNA modifying enzyme [Halalkalicoccus jeotgali B3]
 gi|299124353|gb|ADJ14692.1| MiaB-like tRNA modifying enzyme [Halalkalicoccus jeotgali B3]
          Length = 414

 Score =  144 bits (364), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 118/448 (26%), Positives = 201/448 (44%), Gaps = 41/448 (9%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R+ +++YGC  N  +S  +E      G+ R     +AD+ +LNTC + EK      + L 
Sbjct: 3   RYHIETYGCTSNRGESRAIESALRDAGHYRAAGPAEADVAILNTCTVVEKTE---TNMLR 59

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R + L+    +E  DL  +V GC+A A+ E         +V      +  +P+    A  
Sbjct: 60  RAKELE----EETTDL--IVTGCMALAQSE------AFSDVDARVMHWDEVPQ----AAL 103

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                     VE   E             GV   L I  GC   C++C+  +  G   S 
Sbjct: 104 NGECPTPGPGVEPVLE-------------GVVGILPIARGCMSNCSYCITKHATGRVDSP 150

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           ++   V++AR L+  G  E+ + GQ+   +   G D  + +  +LL  +  I+G  R+R 
Sbjct: 151 TIEANVEKARALVHAGAKELRITGQDTGVY---GWDDGERSLPELLSRICAIEGEFRVRL 207

Query: 266 TTSHP---RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
             ++P     + + L +   + + L  ++H PVQSGSD +L+ M R+H   ++R+I+   
Sbjct: 208 GMANPGGIHGIHEELAEVFAENEKLYDFIHAPVQSGSDEVLEEMRRQHKVEKFREIVKTF 267

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
                   +S+DFIVGFP ET+ D   +MDL+ +I   +    ++S R  T  ++M + +
Sbjct: 268 DRELDHWTLSTDFIVGFPTETEADHELSMDLLREIRPEKVNVTRFSKRPKTDAADM-KGL 326

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
              +K ER   + +  RE      +  VG   EVL  + G           + Q +V N+
Sbjct: 327 GGTIKKERSKAMSEAKREIVGEVYEGMVGDTCEVLCVQPGTGDSVKCRDPAYRQVIVQNA 386

Query: 443 KNHNI--GDIIKVRITDVKISTLYGELV 468
             + I  GD  +  IT  +    +G+ V
Sbjct: 387 SEYGIEPGDFFEAEITASQTMYAFGKPV 414


>gi|307719795|ref|YP_003875327.1| hypothetical protein STHERM_c21230 [Spirochaeta thermophila DSM
           6192]
 gi|306533520|gb|ADN03054.1| hypothetical protein STHERM_c21230 [Spirochaeta thermophila DSM
           6192]
          Length = 442

 Score =  144 bits (363), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 125/446 (28%), Positives = 213/446 (47%), Gaps = 39/446 (8%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC-HIREKAAEKV-YSFL 84
           F+++  GC  N  D+  +  +    G+E V    +ADLIV+NTC  IR+   E +  +FL
Sbjct: 4   FYLEPLGCAKNQVDAEVIISLLLDAGWELVEDPAEADLIVVNTCGFIRDAKEESLETAFL 63

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R R   + RI        ++ GC+AQ  G E+      V+ V+G      + +   +  
Sbjct: 64  FRER-FPDKRI--------LLTGCLAQRYGRELGEEMEEVDGVLGNADLSAVVDAARQVM 114

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT----AFLTIQEGCDKFCTFCVVPYTRG 200
            G+RVV T  +      R         RKR ++    A++ + EGCD  C++C +P  RG
Sbjct: 115 EGRRVVWTPQARRPAHVR---------RKRLLSFPGSAYVKVAEGCDNRCSYCAIPLIRG 165

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
              SR   ++V E + L+  G+ E+ L+ Q++ ++ GK   G   +   LL  + E++G 
Sbjct: 166 RFWSRPEEEIVQEVKGLLGEGIREVNLVAQDLGSY-GKERGG---SLFGLLERILELQGD 221

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
             +R    HP      +++  G    L+PY+ LP Q  S R+L+ M RR  A  Y +++ 
Sbjct: 222 FWVRLLYIHPDHFPWEILRLMGQDRRLLPYVDLPFQHVSARLLRRMGRRGDAERYAELVH 281

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS--NM 378
            +R   PD+ + S F++GFPGE ++D  A    ++++    A  F YSP  GTP    + 
Sbjct: 282 ALRDSLPDVVVRSTFLLGFPGEEEEDLDALARFLEEVRLDWAGFFVYSPEEGTPAEAWHR 341

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFN----DACVGQIIEVLIEKHGKEKGKLVGRSPW 434
            E     V+ ER    ++ L   Q        +  VG+  EVL+E+  + +   + RS +
Sbjct: 342 EEGRKAGVRLERAERRKEDLERLQEGITGERLERWVGRECEVLVEERIEGEDMALARSAF 401

Query: 435 LQS-----VVLNSKNHNIGDIIKVRI 455
                   VV++ +    G +++ R+
Sbjct: 402 QAPEVDGLVVVHGEGLEPGRVVRARV 427


>gi|303247427|ref|ZP_07333699.1| RNA modification enzyme, MiaB family [Desulfovibrio fructosovorans
           JJ]
 gi|302491123|gb|EFL51015.1| RNA modification enzyme, MiaB family [Desulfovibrio fructosovorans
           JJ]
          Length = 447

 Score =  144 bits (363), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 112/408 (27%), Positives = 184/408 (45%), Gaps = 25/408 (6%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +RF + + GC++N Y+S  + + +   G  RV+    AD+ VL TC +  +A  +     
Sbjct: 14  KRFSLTTLGCKVNQYESRALAEAWEKAGLSRVDDPAAADVAVLVTCAVTARAEAESRRLA 73

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            ++    N + + G     VV GC A    +        + V+V P         L R  
Sbjct: 74  RQLARQINPQARPGAR--AVVTGCAAVVAPDAFA----ALGVIVVPDKAG-----LARRP 122

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
           FG    D     +  F  L++   GY+R RG+   + IQ+GC   C++C+VP  RG  +S
Sbjct: 123 FGPD--DAAPRADAVFPDLAVT--GYDRARGL---VKIQDGCSHGCSYCIVPSGRGASVS 175

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG----L 260
           R    ++ EA +LI  G  EI L G N+  + G+ L+     +  L      +       
Sbjct: 176 RPFPDILAEAIRLITAGHREIGLTGINLGHY-GRDLEAPASFWDLLAALDDALAPRYGDT 234

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT-AYEYRQII 319
           VRLR  +  P  +++  +       ++ P+LH+ +QS    +L +M RR   A      +
Sbjct: 235 VRLRLGSLDPAMLTEEGLSVLAAARLVCPHLHISLQSADPEVLVAMGRRADDANRVSSFV 294

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
           D IR   P   +  D + GFPGE+D  F  T D +  +    A  F YS R GT  + M 
Sbjct: 295 DAIRIKWPTFGLGCDVLTGFPGESDAAFGRTRDFLSGLPLTYAHVFPYSRRPGTRAAAMA 354

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQI-IEVLIEKHGKEKG 426
            Q+ + VK ER   L++    ++ +F +    +  + V +E+H    G
Sbjct: 355 GQLSKAVKTERARELRELAAAKKAAFRERLSREARVVVALERHDPAVG 402


>gi|296081133|emb|CBI18159.3| unnamed protein product [Vitis vinifera]
          Length = 549

 Score =  144 bits (363), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 122/440 (27%), Positives = 210/440 (47%), Gaps = 50/440 (11%)

Query: 44  MEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLV 103
           M     + GY   ++ ++ADL ++NTC ++  +   + + + + R+ K           +
Sbjct: 1   MAGQLAAFGYVLSDNPEEADLWLINTCTVKSPSQSAMDTLITKGRSSKKP---------L 51

Query: 104 VVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERL 163
           VVAGCV Q  G   L+    V++V G Q   R+ E++E    G  V   +         L
Sbjct: 52  VVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLNRKT------L 102

Query: 164 SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVC 223
             +D    RK      L I  GC   CT+C   + RG   S ++  +V   R +I +GV 
Sbjct: 103 PALDLPKVRKNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVDSLVGRVRTVIADGVK 162

Query: 224 EITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIK---------GLVRLRYTTSHPRDM 273
           EI L  ++  A+ G+ +     T   LL ++ SE+          G+    Y   H ++M
Sbjct: 163 EIWLSSEDTGAY-GRDIG---VTLPILLNAIVSELPPDGGTMLRIGMTNPPYILEHLKEM 218

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
           +  ++  H     +  +LH+PVQSGSD IL +MNR +T  E+R ++D +  + P + I++
Sbjct: 219 A--VVLRH---PCVYSFLHVPVQSGSDAILSAMNREYTVTEFRTVVDTLTELVPGMQIAT 273

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLC 393
           D I GFPGETD++F  T+ L+ +  + Q    ++ PR GTP + M ++V   V       
Sbjct: 274 DIICGFPGETDEEFAQTVSLIQEYRFPQVHISQFYPRPGTPAARM-KKVPSAV------- 325

Query: 394 LQKKLREQQVSFN-----DACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIG 448
           ++K+ RE    F      +   G++  + I +   +   LVG +     V++ +    +G
Sbjct: 326 VKKRSRELTSIFEAFTPYNGMEGRVERIWISEIATDGIHLVGHTKGYMQVLVVAPRSLMG 385

Query: 449 DIIKVRITDVKISTLYGELV 468
               V+IT V   +++GEL+
Sbjct: 386 TSAIVKITSVGRWSVFGELI 405


>gi|291276741|ref|YP_003516513.1| MiaB-like tRNA modifying enzyme [Helicobacter mustelae 12198]
 gi|290963935|emb|CBG39772.1| Putative MiaB-like tRNA modifying enzyme [Helicobacter mustelae
           12198]
          Length = 413

 Score =  144 bits (363), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 106/385 (27%), Positives = 192/385 (49%), Gaps = 36/385 (9%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + F K++GC+ N++D+  M      + +    + ++AD+IV+N+C +   A   V S++ 
Sbjct: 2   KVFFKTFGCRTNLFDTQVMRQNL--KDFVVCENEEEADIIVVNSCTVTNGADAGVRSYVN 59

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPE----LLE 141
           ++ N    +I           GC A+ +G+ +  +    N+V G   +    +    LL 
Sbjct: 60  KM-NRSGKKI--------YFTGCGAKTQGKNLFDK----NLVFGSFGHTHKEKINDFLLA 106

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRG-VTAFLTIQEGCDKFCTFCVVPYTRG 200
           + RF           E++ +   I     +   G V AF+ IQEGCD  C++C++P  RG
Sbjct: 107 KGRF---------FYEERSDASHIDTTLVSEFVGKVRAFIKIQEGCDFACSYCIIPSVRG 157

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
           I  S   ++V+++   L D+GV E+ L G NV ++ GK         + L++ +S+IKG+
Sbjct: 158 ISRSYPQARVLEQIGILADHGVSEVVLTGTNVGSY-GKDFGS---NIAKLIHEISKIKGI 213

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
           +R+R  +  P  + +  ++   + D L  +LH+ +Q  SDR+L+ MNR +     R +++
Sbjct: 214 LRIRIGSLEPSQIDEEFLELL-EGDFLERHLHIALQHSSDRMLEIMNRHNRVASDRALLE 272

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           +I       AI +DFIVG PGE+   +   ++ + ++       F YS R  TP + M  
Sbjct: 273 KI--ADRGFAIGTDFIVGHPGESVQVWEEALENLTQLPLTHIHPFIYSIRDNTPSAKMKN 330

Query: 381 QVDENVKAERLLCLQKKLREQQVSF 405
            +  +V  ERL  +   + E+  SF
Sbjct: 331 TIRGDVAKERLHIINALVAEKNFSF 355


>gi|218961714|ref|YP_001741489.1| putative 2-alkenal reductase [Candidatus Cloacamonas
           acidaminovorans]
 gi|167730371|emb|CAO81283.1| putative 2-alkenal reductase [Candidatus Cloacamonas
           acidaminovorans]
          Length = 443

 Score =  144 bits (363), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 105/444 (23%), Positives = 202/444 (45%), Gaps = 35/444 (7%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           ++ + S GC  N+ DS R+  +  S G  R +  ++A+++++N+C     A E++   L 
Sbjct: 3   KYTIVSLGCPKNLVDSERLVAIMESYGMIRTDVWEEANILLINSCSFIFNALEELNCLLA 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTY-----YRLPELL 140
            + N     I +     +VV GCV     E++    P V+  +  + +     Y    +L
Sbjct: 63  DVINATEKDITK-----IVVTGCVMNRGYEQLKDYYPEVDAWIPLKDFAAFENYLRENIL 117

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
                 KR+  T        +R+ + DG Y        +L I +GC+  C++C++PY RG
Sbjct: 118 PSLETPKRLSYT--------QRVHLEDGNY-------VYLRIADGCNNKCSYCMIPYIRG 162

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            ++S  +  +++EA+ + + G  E+ L+ Q+  ++ G  + G+K    +L+ +L      
Sbjct: 163 KQVSEPIETLIEEAKSMQEYGR-ELILIAQDTCSY-GTDIYGKK-ALPELIEALHNQTDY 219

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
             +R    HP +      +       L+PY  +P+Q  S +I+K+MNRR +  E +++  
Sbjct: 220 DWIRILYLHPDNFELQWTELWKKFPKLLPYFDVPIQQVSPKIIKAMNRRKSYQELKELFF 279

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
            I+   P+    +  +V +P ET +D       + +I + Q   F YSP       N+ +
Sbjct: 280 HIQQEIPNAVFRTTLMVDYPNETKEDLELLEKFLSEIPFLQGGVFAYSPEAKDLKDNIYD 339

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQS--- 437
           + D     + +   + K  + +    +  VG I   LIE +     + VGR  W Q+   
Sbjct: 340 EFDWKKSKKLMFAWEDKFYQIRNQLLEKYVGTIQSALIEDYDPYSEQYVGRL-WFQAPEI 398

Query: 438 ---VVLNSKNHNIGDIIKVRITDV 458
              V ++    +   +++V I DV
Sbjct: 399 DGCVYIDKLPADNNSLVEVEIVDV 422


>gi|325297732|ref|YP_004257649.1| Ribosomal protein S12 methylthiotransferase rimO [Bacteroides
           salanitronis DSM 18170]
 gi|324317285|gb|ADY35176.1| Ribosomal protein S12 methylthiotransferase rimO [Bacteroides
           salanitronis DSM 18170]
          Length = 433

 Score =  144 bits (363), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 121/450 (26%), Positives = 213/450 (47%), Gaps = 39/450 (8%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDD--ADLIVLNTCHIREKAAEKVYSFLGRIR 88
           + GC  N+ DS ++     + GY+  +   +   ++ V+NTC     A E+  + +    
Sbjct: 10  TLGCSKNLVDSEKLMKQLEANGYKVTHDSGNPQGEIAVINTCGFIGDAKEESINTI---- 65

Query: 89  NLKNSRIKEGGDLL-VVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147
            L+  + KE G L  + V GC+++   +++    P V+   G    +   ELL  A  GK
Sbjct: 66  -LEFCQAKEEGKLKKLFVMGCLSERYLKDLQDEIPQVDKYYGK---FNWNELL--ADLGK 119

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
                 Y  +   ER       Y       A+L I EGCD+ C +C +P   G  +SR +
Sbjct: 120 -----PYHPDLAIERHLTTPKHY-------AYLKISEGCDRKCAYCAIPIITGRHVSRPM 167

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYT 266
            +++DE R L+  GV E  ++ Q +  +   G+D  +K    +L+  ++ I G+  +R  
Sbjct: 168 DEILDEVRLLVSQGVKEFQVIAQELTYY---GVDLYKKQMLPELIEKMAAIPGVKWIRLH 224

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
            ++P      L +   + D +  Y+ + +Q  SD +L+ MNR  T  E  ++I++ R   
Sbjct: 225 YAYPARFPKDLFRVMRENDNVCKYMDIALQHISDNMLQRMNRHVTKAETYELIEQFRKEV 284

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT-PGSNMLEQVDEN 385
           P I + +  +VGFPGET+ DF    + V K+ + +  +F YS   GT    +  + V + 
Sbjct: 285 PGIHLRTTLMVGFPGETEQDFEELKEFVRKVRFDRMGAFAYSEEEGTYSAKHYKDDVPQT 344

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVVL- 440
           VK +RL  L +  +E     + + +G+I +V+I++  KE    +GR    SP +   VL 
Sbjct: 345 VKQQRLDELMEMQQEISNELSHSKIGKIFQVVIDR--KEGEYYIGRTEFDSPEVDPEVLI 402

Query: 441 --NSKNHNIGDIIKVRITDVKISTLYGELV 468
               K  +IG   + ++ D     LY  L+
Sbjct: 403 KDEGKLLHIGSFHRAKVYDADDFDLYATLL 432


>gi|242309031|ref|ZP_04808186.1| tRNA modifying enzyme [Helicobacter pullorum MIT 98-5489]
 gi|239524455|gb|EEQ64321.1| tRNA modifying enzyme [Helicobacter pullorum MIT 98-5489]
          Length = 424

 Score =  144 bits (363), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 119/432 (27%), Positives = 207/432 (47%), Gaps = 50/432 (11%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDM---FFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           R F K++GC+ N++D+  M +    F    YE     +D+D+IV+N+C +   A   V +
Sbjct: 6   RVFFKTFGCRTNLFDTQVMINSLIDFIQTPYE-----EDSDIIVINSCTVTNGADSGVRN 60

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
           ++ R++N       EG    +   GC  + +G+++L++  I     G      + ++L++
Sbjct: 61  YVNRLQN-------EGKK--IFFTGCGVKTQGKDLLQKGLIFGAF-GHSYKEDINKILKQ 110

Query: 143 ARFGKRVVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           ++         + +E   E L  +I+     + R   AF+ IQEGCD  C++C++P  RG
Sbjct: 111 SQ--------SFYLEGDLESLDKNIITDFVGKSR---AFIKIQEGCDFACSYCIIPSVRG 159

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
              S    +++++ +KL  NG  E  L G N+ +W GK L GE  T   LL S+  I  +
Sbjct: 160 KARSFPKEKIINQIKKLTQNGFSEFILTGTNMGSW-GKDL-GENIT--KLLESICAIPQV 215

Query: 261 VRLRYTTSHP----RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
            RLR  +  P    +D  D L     D   +  +LH+ +Q  S  +LK MNR++T  +  
Sbjct: 216 KRLRLGSLEPSQITQDFLDFL-----DNPKIEKHLHIALQHTSPFMLKLMNRQNTFEKDL 270

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
           ++   I   +   A+ SDFIVG P E+   +       + +      SF YSPR  T  +
Sbjct: 271 ELFHTI--AQKGFALGSDFIVGHPQESQKIWEEAFKNFEMLPLTHLHSFIYSPRSNTLSA 328

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSF--NDACVGQIIEVLIE--KHGKEKGKLVGRS 432
            + E +  N+  ER   +++K+ +   +F  N A     + +LIE  K        +G  
Sbjct: 329 TLKETIPGNIARERKKNIEEKIAQNNFAFRQNLAHTKTPLNILIEDCKFENNTYTSLGFD 388

Query: 433 PWLQSVVLNSKN 444
            +   + ++SKN
Sbjct: 389 EYYNKIQISSKN 400


>gi|254486066|ref|ZP_05099271.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Roseobacter sp.
           GAI101]
 gi|214042935|gb|EEB83573.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Roseobacter sp.
           GAI101]
          Length = 456

 Score =  144 bits (362), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 119/454 (26%), Positives = 204/454 (44%), Gaps = 46/454 (10%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC   + DS R+     ++GY        AD +++NTC   + A  +    +G     
Sbjct: 33  SLGCPKALVDSERILTRLRAEGYGVSPDYAGADAVIVNTCGFLDSAKAESLDAIGEA--- 89

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               +KE G   V+V GC+  AE + I    P +  V GP  Y             ++V+
Sbjct: 90  ----LKENG--RVIVTGCLG-AEPDYIREHHPRILAVTGPHQY-------------EQVL 129

Query: 151 DTDYSV----EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           D  ++      D F  L          R  + +L I EGC+  C FC++P  RG   SR 
Sbjct: 130 DAVHAAVPPSPDPFIDLLPAQAVSLTPRHYS-YLKISEGCNHKCKFCIIPDMRGRLQSRP 188

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-------GEKCTFSDLLYSLSEIKG 259
              ++ EA KL+  GV E+ ++ Q+ +A+   G+D       G +   +DL   L  +  
Sbjct: 189 AHAILREAEKLVQGGVKELLVISQDTSAY---GVDIKHAEDRGHRAHITDLARDLGSLGA 245

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
            VRL Y   +P   +   + A G   +++PYL +P Q     +LK M R   A +    I
Sbjct: 246 WVRLHYVYPYPHVRNLIPLMADG---LVLPYLDIPFQHAHPDVLKRMARPAAAAKTLDEI 302

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
              R   PDI + S FIVG+PGET+ +F+  +D +D+    +   F+Y    G   + + 
Sbjct: 303 AAWRDTCPDITLRSTFIVGYPGETEAEFQTLLDWLDEAQLDRVGCFQYENVDGARSNALP 362

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG--KLVGRSPWLQS 437
           + V + VK +R     +K +    +  +A VG+ ++V+I++   +    +    +P +  
Sbjct: 363 DHVPDEVKQDRWNRFMEKAQAISEAKLEAKVGRRMDVIIDEIDGDAATCRTKADAPEIDG 422

Query: 438 VVLNSKNH---NIGDIIKVRITDVKISTLYGELV 468
            +   +     ++GDI+ V + +     L+G +V
Sbjct: 423 NLFIDEGFEGLSVGDIVTVEVEEAGEYDLWGRVV 456


>gi|254882029|ref|ZP_05254739.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|319640963|ref|ZP_07995671.1| Fe-S oxidoreductase [Bacteroides sp. 3_1_40A]
 gi|254834822|gb|EET15131.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|317387408|gb|EFV68279.1| Fe-S oxidoreductase [Bacteroides sp. 3_1_40A]
          Length = 432

 Score =  144 bits (362), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 120/448 (26%), Positives = 209/448 (46%), Gaps = 39/448 (8%)

Query: 33  GCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           GC  N+ DS ++     + GY+  +  D    ++ V+NTC     A E+  + +     L
Sbjct: 12  GCSKNLVDSEKLMRQLEANGYKVTHDSDKPQGEIAVINTCGFIGDAKEESINMI-----L 66

Query: 91  KNSRIKEGGDLL-VVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149
           +  + KE G L  + V GC+++   +E+    P V+   G    +   ELL  A  GK  
Sbjct: 67  EFCQAKEEGKLKKLYVMGCLSERYLKELALEIPQVDKFYGK---FNWNELL--ADLGKA- 120

Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209
               Y  E   ER       Y       A+L I EGCD+ C++C +P   G  ISR + +
Sbjct: 121 ----YKSEFAIERTLTTPHHY-------AYLKISEGCDRKCSYCAIPIITGRHISRPMEE 169

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT-FSDLLYSLSEIKGLVRLRYTTS 268
           ++DE + L+  GV E  ++ Q +  +   G+D  K     +L+  ++ + G+  +R   +
Sbjct: 170 IIDEVKLLVSEGVKEFQIIAQELTYY---GVDLYKSQKLPELIERIANVPGVEWIRLHYA 226

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
           +P    + L +   + D +  Y+ + +Q  SD +L  M R  +  E  ++I++ R   P 
Sbjct: 227 YPAHFPEELFRVMREHDNVCKYMDIALQHISDNMLNKMRRHVSKAETYELIEKFRREVPG 286

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE-QVDENVK 387
           I + +  +VG PGET++DF    + V K+ + +  +F YS   GT  +   E  +   VK
Sbjct: 287 IHLRTTLMVGHPGETEEDFEELKEFVKKVRFDRMGAFAYSEEEGTFAAKEYEDSISHEVK 346

Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVVL--- 440
            +RL  L    +E     +   +G+  +V+I++  KE    +GR    SP +   VL   
Sbjct: 347 QQRLDELMALQQEIAGELSQTKIGKEFKVIIDR--KEGDYYIGRTQFDSPEVDPEVLIKA 404

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
           + +   IG+  KV+IT      LY  ++
Sbjct: 405 DDEYLKIGEFYKVKITAADDFDLYASIL 432


>gi|295836194|ref|ZP_06823127.1| 2-methylthioadenine synthetase [Streptomyces sp. SPB74]
 gi|197695299|gb|EDY42232.1| 2-methylthioadenine synthetase [Streptomyces sp. SPB74]
          Length = 499

 Score =  144 bits (362), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 122/460 (26%), Positives = 191/460 (41%), Gaps = 62/460 (13%)

Query: 23  VPQRFFVK--SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKV 80
           +P+R  V   + GC  N  DS  +     + G++ V     AD+ V+NTC   E A +  
Sbjct: 1   MPERRTVALVTLGCARNEVDSEELAGRLEADGWDLVEDAAHADVAVVNTCGFVEAAKKDS 60

Query: 81  YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140
              L    +LK      G    VV  GC+A+  G+++    P  + V+G   Y  + + L
Sbjct: 61  VDALLEANDLKG----HGRTQAVVAVGCMAERYGKDLAEALPEADGVLGFDDYTNISDRL 116

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT----------------------- 177
           +    G   +   ++  D+ + L +         GV                        
Sbjct: 117 QTILSGG--IHASHTPRDRRKLLPLSPAARQDAPGVALPGHAQQAPEPEDAAPADLPDGL 174

Query: 178 -------------------AFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLI 218
                              A + +  GCD+ C+FC +P  RG  ISR  S V+ E R L 
Sbjct: 175 APASGPRAPLRRRLGTSPVASVKLASGCDRRCSFCAIPSFRGSFISRRPSDVLAETRWLA 234

Query: 219 DNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLI 278
             GV E+ L+ +N N   GK L G+      LL  L+ + G+ R+R +   P +    LI
Sbjct: 235 GQGVREVMLVSEN-NTSYGKDL-GDIRLLETLLPELAAVDGIERVRVSYLQPAETRPGLI 292

Query: 279 KAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVG 338
                   + PY  L  Q  +  +L++M R      +  ++D+IR+  P   + S+FIVG
Sbjct: 293 DVLTSTPKIAPYFDLSFQHSAPGVLRAMRRFGGTDSFLGLLDQIRAKAPQAGVRSNFIVG 352

Query: 339 FPGETDDDFRA-----TMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLC 393
           FPGET++D        T   +D IG      F YS   GT  +    ++ E V AERL  
Sbjct: 353 FPGETEEDVAELERFLTSARLDAIGV-----FGYSDEEGTEAATYATKLPEEVVAERLAR 407

Query: 394 LQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSP 433
           + +   E      +  +G+ +EVL+E    E    +GR P
Sbjct: 408 VARLAEELTAQRAEERIGETMEVLVESAATEDEPALGRGP 447


>gi|150005789|ref|YP_001300533.1| putative Fe-S oxidoreductase [Bacteroides vulgatus ATCC 8482]
 gi|238065291|sp|A6L5E7|RIMO_BACV8 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|149934213|gb|ABR40911.1| putative Fe-S oxidoreductase [Bacteroides vulgatus ATCC 8482]
          Length = 432

 Score =  144 bits (362), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 120/448 (26%), Positives = 209/448 (46%), Gaps = 39/448 (8%)

Query: 33  GCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           GC  N+ DS ++     + GY+  +  D    ++ V+NTC     A E+  + +     L
Sbjct: 12  GCSKNLVDSEKLMRQLEANGYKVTHDSDKPQGEIAVINTCGFIGDAKEESINMI-----L 66

Query: 91  KNSRIKEGGDLL-VVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149
           +  + KE G L  + V GC+++   +E+    P V+   G    +   ELL  A  GK  
Sbjct: 67  EFCQAKEEGKLKKLYVMGCLSERYLKELALEIPQVDKFYGK---FNWNELL--ADLGKA- 120

Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209
               Y  E   ER       Y       A+L I EGCD+ C++C +P   G  ISR + +
Sbjct: 121 ----YKSEFAIERTLTTPHHY-------AYLKISEGCDRKCSYCAIPIITGRHISRPMEE 169

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT-FSDLLYSLSEIKGLVRLRYTTS 268
           ++DE + L+  GV E  ++ Q +  +   G+D  K     +L+  ++ + G+  +R   +
Sbjct: 170 IIDEVKLLVSEGVKEFQIIAQELTYY---GVDLYKSQKLPELIERIANVPGVEWIRLHYA 226

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
           +P    + L +   + D +  Y+ + +Q  SD +L  M R  +  E  ++I++ R   P 
Sbjct: 227 YPAHFPEELFRVMREHDNVCKYMDIALQHISDNMLNKMRRHVSKAETYELIEKFRREVPG 286

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE-QVDENVK 387
           I + +  +VG PGET++DF    + V K+ + +  +F YS   GT  +   E  +   VK
Sbjct: 287 IHLRTTLMVGHPGETEEDFEELKEFVKKVRFDRMGAFAYSEEEGTFAAKEYEDSISHEVK 346

Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVVL--- 440
            +RL  L    +E     +   +G+  +V+I++  KE    +GR    SP +   VL   
Sbjct: 347 QQRLDELMALQQEIAGELSQTKIGKEFKVIIDR--KEGDYYIGRTQFDSPEVDPEVLIKA 404

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
           + +   IG+  KV+IT      LY  ++
Sbjct: 405 DEEYLKIGEFYKVKITAADDFDLYASIL 432


>gi|289449481|ref|YP_003474956.1| ribosomal protein S12 methylthiotransferase RimO [Clostridiales
           genomosp. BVAB3 str. UPII9-5]
 gi|289184028|gb|ADC90453.1| ribosomal protein S12 methylthiotransferase RimO [Clostridiales
           genomosp. BVAB3 str. UPII9-5]
          Length = 453

 Score =  144 bits (362), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 111/439 (25%), Positives = 195/439 (44%), Gaps = 19/439 (4%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ DS  M D     G   V+    A++I++NTC   E A  +    +  +   
Sbjct: 12  SLGCPKNLVDSEYMADRMAKAGLCLVDDPAKAEVIIVNTCGFIESAKVEAIDTILAMAEY 71

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
           K  + K      ++V GC++Q    ++ +  P ++ ++G   Y  +   ++         
Sbjct: 72  KTDKCK-----YLIVTGCLSQRYHGDMKKDLPEIDAILGVGAYGEIVNAIDTLYERDAAT 126

Query: 151 DTDYSVEDKFERLSIVDGGYNRKR---GVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
             +     +  R    D   N +    G  A+L I EGC   C +C +P  RG  ISR +
Sbjct: 127 IAEAVPFCEVRRGHTTDHFVNFRTPSTGSFAYLKIAEGCSNTCAYCAIPGIRGHMISRPM 186

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
             +  EA  L+   V E+ ++ Q+  A+ G  L  E+    +LL  +  +     +R   
Sbjct: 187 EDITAEADNLLQQNVKELIIVAQDTTAY-GVDLYKER-KLPELLQKICALPYDFHIRLLY 244

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
            +   M++ L+    D   +  Y+ +P+Q  SD +LK M R+ T     +I+   R   P
Sbjct: 245 CYSDGMTEELLTVLADEPKICHYIDMPIQHASDHVLKLMGRKDTKENIYRIMHTWRQRIP 304

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
           DI   +  +VGFPGET+ DF   + L+  + + +   F++SP  GT    M +QV   + 
Sbjct: 305 DIVFRTTVMVGFPGETEADFNELIQLIKDLRFERLGCFEFSPEEGTKAVRMPDQVPAEIA 364

Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS--------PWLQSVV 439
            +R   L +   +   +FN++ +  I    IE   ++    +GRS        P L  ++
Sbjct: 365 KQRYETLMEVQNKISQAFNESRLHTITTARIEGITEDGIFYLGRSYAESPDIDPMLY-IL 423

Query: 440 LNSKNHNIGDIIKVRITDV 458
              +  N G+++KV I +V
Sbjct: 424 AKQRELNPGEMVKVEIIEV 442


>gi|116753688|ref|YP_842806.1| MiaB-like tRNA modifying enzyme [Methanosaeta thermophila PT]
 gi|116665139|gb|ABK14166.1| MiaB-like tRNA modifying enzyme [Methanosaeta thermophila PT]
          Length = 411

 Score =  144 bits (362), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 117/444 (26%), Positives = 211/444 (47%), Gaps = 58/444 (13%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           RF +++YGC  N  +S+ +     + G++  + +D +++++LNTC +  +      + L 
Sbjct: 2   RFCIETYGCTSNTGNSMELRGALIAHGHQE-SDLDGSEVVILNTCAVTSRTER---NMLR 57

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA-- 143
           RI  LK  R+        +VAGC+  A                       +PEL+E    
Sbjct: 58  RIGELKGRRL--------IVAGCLPAA-----------------------IPELIESVEC 86

Query: 144 -----RFG-KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197
                R+G  RV+D     E     LS           +   + I EGC   C +C+V  
Sbjct: 87  VGVLNRWGIDRVLDALGRSEHPTSELS----ASCLPGSLCGVVNISEGCLGACAYCIVKR 142

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257
            RG   SR   ++  +  +LI +G  EI L  Q+  A+   G D    +  +LL  LS+I
Sbjct: 143 ARGTLRSREPHEIEKDVMRLISSGAVEIQLTSQDAGAY---GCD-IGASLPELLDLLSDI 198

Query: 258 KGLVRLRYTTSHPRD---MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
            G   +R    +P     + D L+ ++ + + +  ++HLP+QSGSDR+L+ M R +T+ +
Sbjct: 199 DGAFMIRVGMMNPNSVLKILDDLLDSYKN-EKIYRFIHLPLQSGSDRVLERMRRGYTSDD 257

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
           +  ++   RS  P+I++++D I GFPGE+D DFR T D++      +    ++S R  T 
Sbjct: 258 FVNVVSAFRSRYPEISLTTDVITGFPGESDQDFRMTEDVIRITQPDKVNVTRFSRRPHTL 317

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPW 434
            + M+  + + +K ER   + +   +  +  N   +G+ ++VL+ + G+  G +  R+  
Sbjct: 318 -AFMMHDMPDRIKKERSRRVTELWMDIALIRNRRYIGETLDVLVTEQGR-AGTMKARTRN 375

Query: 435 LQSVVLNSKNHNIGDIIKVRITDV 458
              VV++  + + G  +K R  D 
Sbjct: 376 YTGVVVHGLS-SPGKWVKARAIDA 398


>gi|126739931|ref|ZP_01755622.1| RNA modification enzyme, MiaB-family protein [Roseobacter sp.
           SK209-2-6]
 gi|126719163|gb|EBA15874.1| RNA modification enzyme, MiaB-family protein [Roseobacter sp.
           SK209-2-6]
          Length = 472

 Score =  144 bits (362), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 128/462 (27%), Positives = 206/462 (44%), Gaps = 49/462 (10%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC   + DS R+     ++GY        AD +++NTC   + A  +    +G     
Sbjct: 37  SLGCPKALVDSERILTRLRAEGYGISPDYAGADAVIVNTCGFLDSAKAESLDAIGEA--- 93

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               +KE G   V+V GC+  AE + I    P ++ V GP  Y             ++V+
Sbjct: 94  ----LKENGK--VIVTGCLG-AEPDYIREHHPRIHAVTGPHQY-------------EQVL 133

Query: 151 DTDYSV----EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           D  +S      + +  L    G     R  + +L I EGC+  C FC++P  RG   SR 
Sbjct: 134 DAVHSAVPPSPNPYVDLLPAAGVKLTPRHFS-YLKISEGCNHKCKFCIIPDMRGKLASRP 192

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYSLS 255
           +  V+ EA KL+D GV E+ ++ Q+ +A           W+G+ +       S  L  L+
Sbjct: 193 VHAVLREADKLVDAGVRELLVISQDTSAYGLDRKYSTHDWKGEEVRSHILDLSRELGKLA 252

Query: 256 EIKGL-VRLRYTTSHPRDMSDCLIKAHGDLD-VLMPYLHLPVQSGSDRILKSMNRRHTAY 313
               L VRL Y   +P      LI    D D  L+PYL +P Q     +L+ M R   A 
Sbjct: 253 PADELWVRLHYVYPYPHVRE--LIPLMADPDNALLPYLDIPFQHAHPDVLRRMARPAAAA 310

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
           +    I+  R   PDI + S FIVG+PGET+ +F+  +D +D+    +   FKY    G 
Sbjct: 311 KTLDEINAWRDTCPDITLRSTFIVGYPGETEAEFQHLLDWMDEAQLDRVGCFKYENVDGA 370

Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVL---IEKHGKEKGKLVG 430
             +++ + V E VK ER     +K +    +  +A VGQ ++V+   I+  G    +   
Sbjct: 371 RSNDLPDHVPEEVKQERWERFMEKAQAISEAKLEAKVGQTMQVIVDDIDGDGIATCRTKA 430

Query: 431 RSPWLQSVVL---NSKNHNIGDIIKVRITDVKISTLYGELVV 469
            +P +   +      +   +GDI+ V + +     L+G L +
Sbjct: 431 DAPEIDGNLFIDEGVEELKLGDIVTVEVDEAGEYDLWGTLTI 472


>gi|57238477|ref|YP_179608.1| putative tRNA modifying protein [Campylobacter jejuni RM1221]
 gi|81557413|sp|Q5HSX7|RIMO_CAMJR RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|57167281|gb|AAW36060.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Campylobacter
           jejuni RM1221]
 gi|315058909|gb|ADT73238.1| Ribosomal protein S12p Asp88 methylthiotransferase [Campylobacter
           jejuni subsp. jejuni S3]
          Length = 439

 Score =  144 bits (362), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 105/375 (28%), Positives = 186/375 (49%), Gaps = 21/375 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + ++ S GC  N+ DS  M        YE  +    AD+I++NTC   + A ++    + 
Sbjct: 3   KLYLMSLGCNKNLVDSEIMLGRL--SAYELCDEPSKADVIIVNTCGFIDSAKKES---IN 57

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            I +L   R K   D L+VV GC+ Q   EE+++  P V++  G   Y R+ E++ +   
Sbjct: 58  AILDLHEQRKK---DSLLVVTGCLMQRYREELMKELPEVDLFTGVGDYERVDEMILKKT- 113

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                ++ Y   +  +R  I+ G  +      AF+ I EGC++ C+FC +P  +G   SR
Sbjct: 114 -NLFSNSTYLQSENSKR--IITGSNSH-----AFIKIAEGCNQKCSFCAIPSFKGKLKSR 165

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            +S ++ E + L+  G  + + + Q+ +++      GEK     L+  + +IKG+   R 
Sbjct: 166 EISSIIAELKDLVARGYKDFSFIAQDTSSYLFD--KGEKDGLIRLIDEVEKIKGIRAARI 223

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
              +P   S+ LIK     ++ + Y  +P+Q  SD +LK M R   +   +++++ ++S 
Sbjct: 224 LYLYPTSASEALIKRIIASEIFVNYFDMPLQHISDNMLKIMKRGANSTRLKEMLNLMKSA 283

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P+  + + FIVG PGE++ DF    + V   G+ +   F YS    T   +M EQV   
Sbjct: 284 -PNSFLRTGFIVGHPGESEADFEELCEFVKDFGFDRVSVFAYSKEEDTAAFDM-EQVSFK 341

Query: 386 VKAERLLCLQKKLRE 400
           V  +RL  ++K + E
Sbjct: 342 VINKRLKIIEKIVNE 356


>gi|171058738|ref|YP_001791087.1| ribosomal protein S12 methylthiotransferase [Leptothrix cholodnii
           SP-6]
 gi|238066365|sp|B1Y223|RIMO_LEPCP RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|170776183|gb|ACB34322.1| MiaB-like tRNA modifying enzyme YliG [Leptothrix cholodnii SP-6]
          Length = 466

 Score =  144 bits (362), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 126/474 (26%), Positives = 202/474 (42%), Gaps = 67/474 (14%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC   + DS  +     ++GY    +   ADL+++NTC   + A  +    +G     
Sbjct: 24  SLGCPKALTDSELILTQLSAEGYATSKTFQGADLVIVNTCGFIDDAVRESLDTIGEA--- 80

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEE----ILRRSPIVNVVVGPQTYYRLPELLERARFG 146
               + E G   V+V GC+    G+     + +  P V  V GP                
Sbjct: 81  ----LAENGK--VIVTGCLGAKTGDGGGNLVRQMHPSVLAVTGPHAT------------- 121

Query: 147 KRVVDTDYS----VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           + V+D  +       D F  L +   G        A+L I EGC+  C+FC++P  RG  
Sbjct: 122 QEVMDAVHQHVPKPHDPFVDL-VPPAGIKLTPKHYAYLKISEGCNHRCSFCIIPSMRGDL 180

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLL 251
           +SR +  V+ EA++L + GV E+ ++ Q+ +A           W GK +   K    DL+
Sbjct: 181 VSRPIGDVLTEAQRLFEGGVKELLVISQDTSAYGVDVKYRTGFWDGKPV---KTRMLDLV 237

Query: 252 YSLSEIK----GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307
             L E+       VRL Y   +P       + A G   +++PYL +P Q     +LK M 
Sbjct: 238 AQLGELARKHGAWVRLHYVYPYPHVDEVLPLMAEG---LVLPYLDVPFQHAHPDVLKRMK 294

Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           R  +     + + + R   P I + S FI GFPGET+ +F   +D + +    +A  F Y
Sbjct: 295 RPASGERNLERLLKWREACPQIVVRSTFIAGFPGETEAEFEYLLDFLKEAQIDRAGCFAY 354

Query: 368 SPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKH---GKE 424
           SP  G P + +   + + V+ ER             +     VG  ++VL++     G++
Sbjct: 355 SPIEGAPANLLDGALPDAVREERRARFMAVAEAVSTAKLQRRVGSSMQVLVDSAPAMGRK 414

Query: 425 KGKLVGRS----PWLQSVV------LNSKNHNIGDIIKVRITDVKISTLYGELV 468
            G  VGRS    P +   V        SK   +G+  +VRI   +   L GEL+
Sbjct: 415 GG--VGRSYADAPEIDGTVKILPPSKASKTMKVGEFSRVRIVGSQGHDLIGELI 466


>gi|298529707|ref|ZP_07017110.1| MiaB-like tRNA modifying enzyme YliG [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298511143|gb|EFI35046.1| MiaB-like tRNA modifying enzyme YliG [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 430

 Score =  144 bits (362), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 114/442 (25%), Positives = 204/442 (46%), Gaps = 36/442 (8%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMF--FSQGYERVNSMDDADLIVLNTC-HIREKAAEKVYS 82
           + +  S GC  N+ D+   E++     + Y  V+   ++D++++NTC  IR    E + +
Sbjct: 3   KVYTHSLGCPKNMVDT---ENILSGLKEHYFAVDRPFESDVVLINTCAFIRPAVEESLET 59

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
                +++K    +     L+VV GC+    G  + R  P  ++ V       LP  +  
Sbjct: 60  IFSAAQDVKGLSQRP----LLVVTGCLVSRYGTGLGREIPEADMFVPIARQAELPGKI-L 114

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            R G++V         + E   +  G +       A++ I EGC+  C FC +P  RG  
Sbjct: 115 YRLGRKV---------EAEAPGVRHGPFKS----FAYVKISEGCNNRCAFCTIPSIRGKL 161

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR   +V+ EA  LID G  E+ L+ Q+  A+ G+ L G +   S L   L+ ++GL+R
Sbjct: 162 RSRPEHEVIQEAGHLIDQGAGELVLVSQDSTAY-GRDL-GCRRGLSSLAEKLAGLEGLLR 219

Query: 263 LRYTTSHPRDMSDCLIKAHGDL-DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           LR    +P  ++D L+    +L    +PY  +P+Q  +  +LK M R     +  ++I R
Sbjct: 220 LRIMYLYPSGLNDGLLARLAELGPPFVPYFDVPLQHANPELLKKMGRPFQQ-DPMEVIRR 278

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           IR+  P  AI +  I G+PGE +  FR  ++ V +        F + P  GT  +    Q
Sbjct: 279 IRNYFPGAAIRTTLITGYPGEEERHFRELLEFVRQARVQHLGVFPFYPEEGTRAAGFPGQ 338

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKGKLVGRSPWLQS--- 437
           + + VK ER   + ++ +     +     G+ +++L+ + H +  G   GR+ W Q+   
Sbjct: 339 IPDEVKNERQRLIMQEQKRVSREYLKGFPGESLDILVDDPHPEWPGLYTGRA-WFQAPEV 397

Query: 438 ---VVLNSKNHNIGDIIKVRIT 456
                ++      G +++  IT
Sbjct: 398 DGLTYISGPGVGPGKMVRAEIT 419


>gi|294776168|ref|ZP_06741657.1| MiaB-like protein [Bacteroides vulgatus PC510]
 gi|294449991|gb|EFG18502.1| MiaB-like protein [Bacteroides vulgatus PC510]
          Length = 432

 Score =  144 bits (362), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 120/448 (26%), Positives = 209/448 (46%), Gaps = 39/448 (8%)

Query: 33  GCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           GC  N+ DS ++     + GY+  +  D    ++ V+NTC     A E+  + +     L
Sbjct: 12  GCSKNLVDSEKLMRQLEANGYKVTHDSDKPQGEIAVINTCGFIGDAKEESINMI-----L 66

Query: 91  KNSRIKEGGDLL-VVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149
           +  + KE G L  + V GC+++   +E+    P V+   G    +   ELL  A  GK  
Sbjct: 67  EFCQAKEEGKLKKLYVMGCLSERYLKELALEIPQVDKFYGK---FNWNELL--ADLGKA- 120

Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209
               Y  E   ER       Y       A+L I EGCD+ C++C +P   G  ISR + +
Sbjct: 121 ----YKSEFAIERTLTTPHHY-------AYLKISEGCDRKCSYCAIPIITGRHISRPMEE 169

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT-FSDLLYSLSEIKGLVRLRYTTS 268
           ++DE + L+  GV E  ++ Q +  +   G+D  K     +L+  ++ + G+  +R   +
Sbjct: 170 IIDEVKLLVSEGVKEFQIIAQELTYY---GVDLYKSQKLPELIERIANVPGVEWIRLHYA 226

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
           +P    + L +   + D +  Y+ + +Q  SD +L  M R  +  E  ++I++ R   P 
Sbjct: 227 YPAHFPEELFRVMREHDNVCKYMDIALQHISDNMLNKMRRHVSKAETYELIEKFRREIPG 286

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE-QVDENVK 387
           I + +  +VG PGET++DF    + V K+ + +  +F YS   GT  +   E  +   VK
Sbjct: 287 IHLRTTLMVGHPGETEEDFEELKEFVKKVRFDRMGAFAYSEEEGTFAAKEYEDSISHEVK 346

Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVVL--- 440
            +RL  L    +E     +   +G+  +V+I++  KE    +GR    SP +   VL   
Sbjct: 347 QQRLDELMALQQEIAGELSQTKIGKEFKVIIDR--KEGDYYIGRTQFDSPEVDPEVLIKA 404

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
           + +   IG+  KV+IT      LY  ++
Sbjct: 405 DEEYLKIGEFYKVKITAADDFDLYASIL 432


>gi|305432245|ref|ZP_07401408.1| 2-methylthioadenine synthetase [Campylobacter coli JV20]
 gi|304444593|gb|EFM37243.1| 2-methylthioadenine synthetase [Campylobacter coli JV20]
          Length = 439

 Score =  144 bits (362), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 106/380 (27%), Positives = 185/380 (48%), Gaps = 31/380 (8%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + ++ S GC  N+ DS  M        YE  +    AD++++NTC   + A ++    + 
Sbjct: 3   KLYLMSLGCNKNLVDSEIMLGRL--SAYELCDEPSKADVLIVNTCGFIDSAKKES---IN 57

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            I +L   R K   D L+VV GC+ Q   EE+++  P V++  G   Y R+ E++ +   
Sbjct: 58  AILDLHEQRKK---DSLLVVTGCLMQRYREELMKELPEVDLFTGVGDYERIDEMILKKT- 113

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT-----AFLTIQEGCDKFCTFCVVPYTRG 200
                       + F   + + G  N KR +T     AF+ I EGC++ C+FC +P  +G
Sbjct: 114 ------------NLFSNSTYLQGE-NSKRIITGSNSHAFIKIAEGCNQKCSFCAIPSFKG 160

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
              SR +S ++ E + L+  G  + + + Q+ +++      GEK     L+  + +I+G+
Sbjct: 161 KLKSREISSIIAELKDLVARGYKDFSFIAQDTSSYLFD--KGEKDGLIRLIDEVEKIEGI 218

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
              R    +P   S+ LIK      + + Y  +P+Q  SD +LK M R   +   +++++
Sbjct: 219 KAARILYLYPTSASEALIKRIIASKIFVNYFDMPLQHISDNMLKIMKRGANSTRLKEMLN 278

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
            ++S  PD  + + FIVG PGE+D DF    + +   G+ +   F YS    T   +M E
Sbjct: 279 LMKSA-PDSFLRTGFIVGHPGESDADFEEFCEFIKDFGFDRVSVFAYSKEEDTAAFDM-E 336

Query: 381 QVDENVKAERLLCLQKKLRE 400
           QV   V  +RL  ++K + E
Sbjct: 337 QVPFKVINKRLKIIEKIVDE 356


>gi|302542094|ref|ZP_07294436.1| 2-methylthioadenine synthetase [Streptomyces hygroscopicus ATCC
           53653]
 gi|302459712|gb|EFL22805.1| 2-methylthioadenine synthetase [Streptomyces himastatinicus ATCC
           53653]
          Length = 498

 Score =  143 bits (361), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 125/474 (26%), Positives = 204/474 (43%), Gaps = 47/474 (9%)

Query: 23  VPQRFFVK--SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKV 80
           +P+R  V   + GC  N  DS  +       G+E V    DAD+ V+NTC   E A +  
Sbjct: 1   MPERRTVALVTLGCARNEVDSEELAGRLADDGWELVEQAADADVAVVNTCGFVEAAKKDS 60

Query: 81  YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG----------- 129
              L    +LK+     G    VV  GC+A+  G+++    P  + V+G           
Sbjct: 61  VDALLEANDLKD----HGRTQAVVAVGCMAERYGKDLAEALPEADGVLGFDDYADISGRL 116

Query: 130 -------------PQTYYRLPELLERARFGKRVVD-----TDYSVEDKFERLSIVDGG-- 169
                        P+   +L  +    R     V       D   ED  + ++   G   
Sbjct: 117 QTILSGGIHASHTPRDRRKLLPISPAERQDNSAVALPGHAQDTPPEDLPDGVAPASGPRA 176

Query: 170 -YNRKRGVTAFLTIQ--EGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEIT 226
              R+ G +   +++   GCD+ C+FC +P  RG  ISR  S V+ E R L + GV EI 
Sbjct: 177 PLRRRLGNSPVASVKLASGCDRRCSFCAIPSFRGSFISRRPSDVLGETRWLAEQGVKEIM 236

Query: 227 LLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV 286
           L+ +N N   GK L G+      LL  L+ + G+ R+R +   P +M   LI      + 
Sbjct: 237 LVSEN-NTSYGKDL-GDIRLLETLLPELAAVDGIERIRVSYLQPAEMRPGLIDVLTSTEK 294

Query: 287 LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDD 346
           + PY  L  Q  +  +L+ M R      + ++++ IR   P     S+FIVGFPGET+DD
Sbjct: 295 VAPYFDLSFQHSAPGVLRRMRRFGDTDRFLELLETIRGKAPQAGARSNFIVGFPGETEDD 354

Query: 347 FRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFN 406
                  + +        F YS   GT  +   ++VD +  AERL  + +   E      
Sbjct: 355 LAELERFISEARLDAIGVFGYSDEDGTEAAGYEDKVDPDEVAERLEHISRLAEELTAQRA 414

Query: 407 DACVGQIIEVLIEK---HGKEKGKLVGRSPWL--QSVVLNSKNHNIGDIIKVRI 455
           D  +G+ + VL+++    G   G+   ++P    Q+++  S     G +++ ++
Sbjct: 415 DERLGETVTVLVDEIDDTGDVLGRAAHQAPETDGQTLLRTSARPAAGRMVEAKV 468


>gi|194334320|ref|YP_002016180.1| MiaB-like tRNA modifying enzyme YliG [Prosthecochloris aestuarii
           DSM 271]
 gi|238066450|sp|B4S8Z6|RIMO_PROA2 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|194312138|gb|ACF46533.1| MiaB-like tRNA modifying enzyme YliG [Prosthecochloris aestuarii
           DSM 271]
          Length = 433

 Score =  143 bits (361), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 117/401 (29%), Positives = 184/401 (45%), Gaps = 33/401 (8%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC-HIREKAAEKVYSF 83
           Q  F+ S GC  N  DS R+       G    +  DDAD+I++NTC  I +   E +   
Sbjct: 6   QSIFLLSLGCSKNTVDSERLIRQAELNGLHFTDQADDADIIIINTCGFIADAKEESINEI 65

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           L       N  IK      + V GC++     E+    P V+   G      L E++   
Sbjct: 66  LAATEKRHNGEIK-----ALFVMGCLSALYSRELRAELPEVDHFFGTSD---LEEIIS-- 115

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
                V+   Y   +  ER  +    Y       A+L I EGC + C+FC +P  RG   
Sbjct: 116 -----VLGGSYRPSNIHERTLLTPPHY-------AWLKIAEGCSRTCSFCAIPKMRGRYR 163

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK-GLVR 262
           S  + ++  EA  L+ NGV E+ ++ Q++  + G   D E+   +DLL  L+  +   +R
Sbjct: 164 SEPIERLEKEASLLLKNGVRELNIISQDITQY-GWDFD-ERSHLNDLLKKLAAQEFSWIR 221

Query: 263 L--RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
           L   Y    P D+ D + + H +   +  YL +PVQ  SDRILKSM R         +++
Sbjct: 222 LLYAYPLHFPLDVIDTM-REHAN---ICNYLDMPVQHISDRILKSMQRGIDKKGTIGLLE 277

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
            IR   PDI + +  IVG+PGETD +F   ++ V ++ + +   F YS    T     LE
Sbjct: 278 SIRKKNPDIRLRTTMIVGYPGETDREFDELLEFVAQLRFDRLGCFPYSHEEHTSAFKHLE 337

Query: 381 -QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
             + E +K ER+  L +         N    G++++VL+++
Sbjct: 338 DDIPEKIKKERVEALMELQESIAAERNRELEGRVMKVLVDE 378


>gi|303235727|ref|ZP_07322334.1| ribosomal protein S12 methylthiotransferase RimO [Prevotella
           disiens FB035-09AN]
 gi|302484174|gb|EFL47162.1| ribosomal protein S12 methylthiotransferase RimO [Prevotella
           disiens FB035-09AN]
          Length = 433

 Score =  143 bits (361), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 118/455 (25%), Positives = 207/455 (45%), Gaps = 50/455 (10%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEK----VYSFL 84
           + GC  N+ DS  +   F + GY+ V+  +  + ++ V+NTC   + A E+    +  F+
Sbjct: 10  TMGCSKNLVDSELLMKQFEANGYDCVHDSEKPEGEIAVINTCGFIDTAKEESINTILEFV 69

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R  N + S++         V GC++Q   E++ +  P V+   G   +  L   L +A 
Sbjct: 70  NRKENGQLSKL--------FVMGCLSQRYKEDLEKEIPEVDKFYGKFNFKELLTDLGKAE 121

Query: 145 F----GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
                G+R + T +                       A++ I EGCD+ C +C +P   G
Sbjct: 122 VTACNGRRSLTTPHHY---------------------AYIKIAEGCDRHCAYCAIPLITG 160

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
              SR +  ++ E  +L   G  E  ++ Q +  + G  LDG K   ++L+  +++I G+
Sbjct: 161 KHRSRKMEDILKEVAELAAAGTKEFQVIEQELTYY-GVDLDG-KHHITELISRMADIPGV 218

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
             +R   ++P      L+    +   +  YL + +Q  SD +L  M R  T  E    I 
Sbjct: 219 EWIRLHYAYPNQFPMDLLDVMREKPQVCKYLDVALQHVSDNMLTRMRRNVTKQETMDFIR 278

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
            +R   P++ I +  +VGFPGET+ DF    + V    + +  +F YS   GT  +   E
Sbjct: 279 SLREKVPNLHIRTTLLVGFPGETEQDFEELKEFVRWARFERMGAFAYSHEEGTYSALHYE 338

Query: 381 -QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWL---- 435
             V E VK +RL  +    +E         +G++++V+I++  KE    +GRS +     
Sbjct: 339 DDVPEEVKQKRLDEIMAIQQEISAEIEAEKIGKVLKVIIDR--KEGEYYIGRSEFCSPEV 396

Query: 436 --QSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
             + ++   K   IG+  +VRITD     LYGE++
Sbjct: 397 DPEVLIQAEKTLKIGEFYQVRITDADEFDLYGEVL 431


>gi|332879558|ref|ZP_08447253.1| ribosomal protein S12 methylthiotransferase RimO [Capnocytophaga
           sp. oral taxon 329 str. F0087]
 gi|332682524|gb|EGJ55426.1| ribosomal protein S12 methylthiotransferase RimO [Capnocytophaga
           sp. oral taxon 329 str. F0087]
          Length = 448

 Score =  143 bits (361), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 117/450 (26%), Positives = 209/450 (46%), Gaps = 41/450 (9%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEKVYSFLGR 86
           V + GC  N+ DS ++     + GY+  +  D    ++ V+NTC     A E+  + +  
Sbjct: 23  VITLGCSKNLVDSEKLMRQLEANGYKVTHDTDRPQGEIAVINTCGFIGDAKEESINMI-- 80

Query: 87  IRNLKNSRIKEGGDLL-VVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
              L+  + KE G L  + V GC+++   +E+    P V+   G   +  L   L +A  
Sbjct: 81  ---LEFCQAKEEGRLKKLFVMGCLSERYLKELGEEIPQVDKFYGKFDWNELLTDLGKA-- 135

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                   Y  E   ER       Y       A+L I EGCD+ C++C +P   G  +SR
Sbjct: 136 --------YHQELSLERELTTPSHY-------AYLKISEGCDRRCSYCAIPIITGKHVSR 180

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLR 264
            +  ++DE R L+  GV E  ++ Q +  +   GLD   +    +L+  +++I G+  +R
Sbjct: 181 PIEDILDEVRMLVSRGVKEFQVIAQELTYY---GLDLYHRQMLPELIERMADIPGVDWIR 237

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
              ++P +    L +   +   +  Y+ + +Q  SD +L+ M+R  T  E   +I+R R 
Sbjct: 238 LHYAYPANFPVDLFRVMREKKNVCKYMDIALQHISDNMLQRMHRHVTRQETYDLIERFRE 297

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ--- 381
             P + + +  +VG PGET++DF   +D V K+ + +  +F YS   GT  +   E    
Sbjct: 298 EVPGVHLRTTLMVGHPGETEEDFNELLDFVRKVKFDRMGAFAYSEEEGTYSAEHYEDEIP 357

Query: 382 -VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPWLQSV 438
              +  + ++L+ LQ+K+           +G+I +V+I++   E   G+    SP +   
Sbjct: 358 FETKQARLDKLMALQQKI---SADLAAQKIGKIFKVIIDRSEGEYYIGRTEFDSPEVDPE 414

Query: 439 VL---NSKNHNIGDIIKVRITDVKISTLYG 465
           VL   +    ++G   +V+ITD     LYG
Sbjct: 415 VLIPVSEGTLSLGTFYEVKITDADDFDLYG 444


>gi|315185501|gb|EFU19271.1| RNA modification enzyme, MiaB family [Spirochaeta thermophila DSM
           6578]
          Length = 442

 Score =  143 bits (361), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 122/418 (29%), Positives = 202/418 (48%), Gaps = 34/418 (8%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC-HIREKAAEKV-YSFL 84
           F+++  GC  N  D+  +  +    G+E V    +ADLIV+NTC  IR+   E +  +FL
Sbjct: 4   FYLEPLGCAKNQVDAEVIISLLLDAGWELVEDPAEADLIVVNTCGFIRDAKEESLETAFL 63

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R R   + RI        ++ GC+AQ  G E+      V+ V+G      + +   +  
Sbjct: 64  FRER-FPDKRI--------LLTGCLAQRYGRELGEGMEEVDGVLGNADLSAVVDAARQVM 114

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT----AFLTIQEGCDKFCTFCVVPYTRG 200
            G+RVV T  +      R         RKR ++    A++ + EGCD  C++C +P  RG
Sbjct: 115 EGRRVVWTPQARRPAHVR---------RKRLLSFPGSAYVKVAEGCDNRCSYCAIPLIRG 165

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
              SR   ++V E + L+  G+ E+ L+ Q++ ++ GK   G   + S LL  + E++G 
Sbjct: 166 RFWSRPEEEIVQEVKGLLGEGIREVNLVAQDLGSY-GKERGG---SLSGLLERILELQGD 221

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
             +R    HP      +++  G    L+PY+ LP Q  S R+L+ M RR  A  Y +++ 
Sbjct: 222 FWVRLLYIHPDHFPWEILRLMGQDRRLLPYVDLPFQHVSARLLRRMGRRGDAERYAELVH 281

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS--NM 378
            +R   PD+ + S F++GFPGE ++D  A    ++++    A  F YSP  GTP    + 
Sbjct: 282 ALRDSLPDVVVRSTFLLGFPGEEEEDLDALARFLEEVRLDWAGFFVYSPEEGTPAEAWHR 341

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFN----DACVGQIIEVLIEKHGKEKGKLVGRS 432
            E     V+ ER    ++ L   Q        +  VG+  EVL+E+  + +   + RS
Sbjct: 342 EEGRKGRVRLERAERRKEDLERLQEGITGERLERWVGRECEVLVEERIEGEDMALARS 399


>gi|281419891|ref|ZP_06250890.1| RNA modification enzyme, MiaB family [Prevotella copri DSM 18205]
 gi|281406018|gb|EFB36698.1| RNA modification enzyme, MiaB family [Prevotella copri DSM 18205]
          Length = 433

 Score =  143 bits (361), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 125/460 (27%), Positives = 213/460 (46%), Gaps = 59/460 (12%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAA-EKVYSFLGRI 87
           + GC  N+ DS  +   F + GY  V+       ++ V+NTC   E A  E + + L  I
Sbjct: 10  TLGCSKNLVDSELLMKQFEANGYHCVHDSKRPQGEIAVINTCGFIEDAKQESIDTILEFI 69

Query: 88  RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147
           +  +  R+++     + V GC++Q   +E+    P V+   G   Y +L + L +A    
Sbjct: 70  QAKEEGRLRK-----LYVMGCLSQRYQKELEEEMPEVDKFYGKFNYKQLLQELGKAEVS- 123

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVT-----AFLTIQEGCDKFCTFCVVPYTRGIE 202
                                  N +R +T     A++ I EGC++ C +C +P   G  
Sbjct: 124 ---------------------SCNGQRHLTTPRHYAYIKIAEGCNRHCAYCAIPIITGKH 162

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR   +++ E R+L+  GV E  ++ Q +  + G  +DG K   ++L+  +++I G+  
Sbjct: 163 VSRPKEEILQEVRELVAEGVKEFQIIAQELTYY-GVDIDG-KHHITELISEMADIPGVKW 220

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R   ++P      L+    +   +  YL + +Q  SD +L SM+R  T  E   ++  I
Sbjct: 221 IRLHYAYPNQFPMDLLDVMREKPNVCKYLDIALQHISDHMLTSMHRHVTKQETINLLKAI 280

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R   P I I +  +VGFPGETD+DF   +D V +  + +  +F YS   GT  +   E  
Sbjct: 281 RERVPGIHIRTTLMVGFPGETDEDFHELLDFVREQRFERMGAFAYSEEEGTYSATHYE-- 338

Query: 383 DENVKAERLLCLQKKLREQQVSFNDAC-------VGQIIEVLIEKHGKEKGKLVGR---- 431
            +NV AE     Q++L E  +   D         VG+ + V+I++  KE    +GR    
Sbjct: 339 -DNVPAE---VKQRRLDELMILQQDISSEIEADKVGKNMTVIIDR--KEGDYYIGRTEFC 392

Query: 432 SPWLQSVVL---NSKNHNIGDIIKVRITDVKISTLYGELV 468
           SP +   VL   + K   +G   +V IT  +   LYG++V
Sbjct: 393 SPEVDPEVLIRADEKRLRVGCFYQVEITASEEFDLYGKVV 432


>gi|319957782|ref|YP_004169045.1| SSU ribosomal protein s12p methylthiotransferase [Nitratifractor
           salsuginis DSM 16511]
 gi|319420186|gb|ADV47296.1| SSU ribosomal protein S12P methylthiotransferase [Nitratifractor
           salsuginis DSM 16511]
          Length = 439

 Score =  143 bits (361), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 120/446 (26%), Positives = 215/446 (48%), Gaps = 34/446 (7%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + ++  + S GC  N+ DS  M        YE  +   +AD+I++NTC   E A E+   
Sbjct: 1   MSKKLHLVSLGCTKNLVDSEVMLGKL--ADYELSDEPAEADVIIVNTCGFIEAAKEES-- 56

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-- 140
            +  + +L   R KE  D L+V++GC+++   E++ +  P +++  G   Y R+ EL+  
Sbjct: 57  -IATVLDLHERR-KE--DSLLVMSGCLSERYKEQLQKEMPEIDIFTGVGDYERIDELIRQ 112

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           +++ F  +V    Y   +K  RL I    Y+      A++ I EGC++ C+FC +P  +G
Sbjct: 113 KQSTFSPQV----YLATEKSPRL-ITGSNYH------AYIKIAEGCNQNCSFCAIPSFKG 161

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
              SR+L  +V E   L   G  + + + Q+ +++ G+ L G +    DL+  + +I G+
Sbjct: 162 RLQSRTLDSIVAEVSALTAKGFYDFSFISQDSSSY-GRDL-GMRDGLIDLIRHMEQIPGV 219

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
              R    +P   S  LI A  D  V   Y  +P+Q   DR+LK+M R     + R++++
Sbjct: 220 RSARILYLYPSTTSFELIDAIADSPVFQTYYDMPIQHIDDRVLKTMKRGFGEAKTRELLE 279

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
            +RS      + +  I G PGE+++ FR   D ++  G+ +   F YS    T    M E
Sbjct: 280 AMRSKEGSF-VRTSVIAGHPGESEESFRKLCDFLESFGFDRINVFAYSNEEETAAYEM-E 337

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQS--- 437
           Q+ E V   R   L +  +  + +  +  +G+   + I+   +E   L+   P L +   
Sbjct: 338 QLPEEVITRRTEILGEIAQRSRDASLERMIGRRCRLAIDGPSQEHEYLLSARPLLWAPEI 397

Query: 438 ---VVLNSKNH---NIGDIIKVRITD 457
              V++N  N     IG + + +IT+
Sbjct: 398 DGEVLVNDTNDLDVKIGGLYQGKITE 423


>gi|255322313|ref|ZP_05363459.1| conserved hypothetical protein [Campylobacter showae RM3277]
 gi|255300686|gb|EET79957.1| conserved hypothetical protein [Campylobacter showae RM3277]
          Length = 429

 Score =  143 bits (361), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 104/385 (27%), Positives = 189/385 (49%), Gaps = 36/385 (9%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ + K++GC+ N+YD+  M+   + + Y+ V+  ++AD++V+N+C +   A     S++
Sbjct: 15  EKVYFKTFGCRTNIYDTELMKS--YVKDYDIVSDENEADIVVVNSCTVTNSADSGARSYI 72

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             I+       K G    V++ GC A ++G+E+  +S +  V+ G      +  LL+   
Sbjct: 73  NGIK-------KRGAR--VILTGCGAVSKGKELFNKSAVFGVI-GASKKEDINALLK--- 119

Query: 145 FGKRVVDTDYSVEDKFE--RLSIVDGG--YNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
                     S +  FE   L  +D     N +    AF+ IQEGCD  C++C++P  RG
Sbjct: 120 ----------SQDPFFELGNLKSIDKNIVTNYENHTKAFIKIQEGCDFACSYCIIPAVRG 169

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
              S     ++ EA+ L  NG  E+ L G N+ ++   G D    +   LL  L +I G+
Sbjct: 170 KARSMDEEAILREAKILAYNGYNELVLTGTNIGSY---GKD-TGSSLGRLLGRLGKIGGI 225

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R  +  P  + +   +   +   L  +LH+ +Q  S+ +L+ M RR+ A+   ++  
Sbjct: 226 KRIRLGSIEPSQIDESFREILRE-SWLERHLHIALQHTSEAMLRIMRRRNQAFRDLELFL 284

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
            +  +    A+ +D+IVG PGE+++ +   +D   K        F YSPR GT  ++M  
Sbjct: 285 ELSQM--GFALGTDYIVGHPGESEEIWSEALDNFKKFPLTHLHCFAYSPRSGTHSADMKV 342

Query: 381 QVDENVKAERLLCLQKKLREQQVSF 405
            V+ +V   RL  L++ + E    F
Sbjct: 343 DVNGDVAKARLKVLKQIVAENNFKF 367


>gi|325108328|ref|YP_004269396.1| RNA modification enzyme, MiaB family [Planctomyces brasiliensis DSM
           5305]
 gi|324968596|gb|ADY59374.1| RNA modification enzyme, MiaB family [Planctomyces brasiliensis DSM
           5305]
          Length = 491

 Score =  143 bits (361), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 120/418 (28%), Positives = 204/418 (48%), Gaps = 49/418 (11%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  + +     GY      + ADL V+NTC +      K       IR L
Sbjct: 72  TLGCKVNQYETQLVYEALRKNGYREARDGETADLCVVNTCTVTNTGDSKSRQV---IRQL 128

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
             +R   G   LV+  GC A  + +++     +  VV   +    LP++LER        
Sbjct: 129 --ARKNPGTRTLVM--GCYATRDPQQVADLPGVFEVVTDKR---ELPDILER-------- 173

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
              + + D    +S  +G   RKR   A++ +Q+GC   CT+C++P  R    SRS  Q+
Sbjct: 174 ---HGIHDMPVGISHFEG---RKR---AYVKVQDGCILKCTYCIIPSVRPGLQSRSPQQI 224

Query: 211 VDEARKLIDNGVCEITLLGQNVNAW-----RGKGLDGEKCTFS--DLLYSLSEIKGLVRL 263
            +E R+L+DNG  EI + G +V  +     RGK     K  F    L   L +I G  R+
Sbjct: 225 EEEVRRLVDNGYREIVITGVHVGHYGVDTTRGKS---GKPPFRLWHLFQKLDKIPGDWRM 281

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R ++    +++D  I A  D + L P  H  +QSGS+ +L+ M RR++   + + ++ +R
Sbjct: 282 RLSSIEAVEINDDFISAAADCEHLCPQFHPALQSGSETVLRRMRRRYSMARFLEKLENMR 341

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
               D A ++D IVGFPGET+++F  T+       + +   F YS R GT  ++  +Q  
Sbjct: 342 ERLDDPAFTTDVIVGFPGETEEEFEETLQACRDARFMKTHVFPYSTRKGTKAADFADQCP 401

Query: 384 ENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSV 438
             V   + +RL  L++ L E+   + ++ +G   +VL+E+      ++ GR  W++  
Sbjct: 402 PQVIKNRVQRLSDLERDLAER---YYESRLGLPAKVLVER------EISGRPGWVRGT 450


>gi|254465076|ref|ZP_05078487.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Rhodobacterales
           bacterium Y4I]
 gi|206685984|gb|EDZ46466.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Rhodobacterales
           bacterium Y4I]
          Length = 471

 Score =  143 bits (361), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 126/460 (27%), Positives = 208/460 (45%), Gaps = 49/460 (10%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC   + DS R+     ++GY        AD +++NTC   + A  +    +G     
Sbjct: 37  SLGCPKALVDSERILTRLRAEGYGISPDYAGADAVIVNTCGFLDSAKAESLEAIGEA--- 93

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               +KE G   V+V GC+  AE + I    P ++ V GP  Y             ++V+
Sbjct: 94  ----LKENGK--VIVTGCLG-AEPDYIREHHPRIHAVTGPHQY-------------EQVL 133

Query: 151 DTDYSV----EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           D  +S      + +  L    G     R  + +L I EGC+  C FC++P  RG   SR 
Sbjct: 134 DAVHSAVPPSPNPYVDLLPATGVRLTPRHFS-YLKISEGCNHKCKFCIIPDMRGKLASRP 192

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYSLS 255
           +  V+ EA KL++ GV E+ ++ Q+ +A           W+G+ +       S  L  L+
Sbjct: 193 VHAVLREAEKLVEAGVRELLVISQDTSAYGLDRKYSAHPWKGEDVRSHILDLSRELGKLA 252

Query: 256 EIKGL-VRLRYTTSHPRDMSDCLIKAHGDLD-VLMPYLHLPVQSGSDRILKSMNRRHTAY 313
             + L VRL Y   +P      LI    D +  L+PYL +P Q     +L+ M R   A 
Sbjct: 253 PAEDLWVRLHYVYPYPHVRE--LIPLMADPENALLPYLDIPFQHAHPDVLRRMARPAAAA 310

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
           +    I+  R+  PDI + S FIVGFPGET+ +F+  +D +D+    +   FKY    G 
Sbjct: 311 KTLDEINAWRATCPDITLRSTFIVGFPGETEAEFQHLLDWMDEAQLDRVGCFKYENVDGA 370

Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVL---IEKHGKEKGKLVG 430
             +++ + V E VK ER     +K +    +   A VGQ ++V+   I++ G    +   
Sbjct: 371 RSNDLPDHVPEEVKQERWERFMEKAQAISEAKLAAKVGQTMQVIVDDIDEDGIATCRTKA 430

Query: 431 RSPWLQSVVL---NSKNHNIGDIIKVRITDVKISTLYGEL 467
            +P +   +     ++    GD++ V + +     L+G+L
Sbjct: 431 DAPEIDGNLFIDEGTEGLQAGDLVTVEVDEAGEYDLWGKL 470


>gi|116334998|ref|YP_802493.1| hypothetical protein CRP_096 [Candidatus Carsonella ruddii PV]
 gi|116235279|dbj|BAF35127.1| conserved hypothetical protein [Candidatus Carsonella ruddii PV]
          Length = 426

 Score =  143 bits (361), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 101/387 (26%), Positives = 191/387 (49%), Gaps = 32/387 (8%)

Query: 28  FVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDD---ADLIVLNTCHIREKAAEKVYSFL 84
           ++K+ GC +N Y S     + ++  Y ++  + +   ++L++LN+C +R+    K+    
Sbjct: 8   YIKTLGCNINTYIS---SKIIYNIKYFKIKILKNFLKSNLLILNSCVVRKNPQIKI---- 60

Query: 85  GRIRNLKNSRIKEGGDLLVV-VAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
             ++ LK     +    +++ + GC+ + E    L  S  +++V+   +Y  + ++L   
Sbjct: 61  --LKELKKWFFIKKYKKIIIILTGCLTEFEKINSLI-SLKIDIVINSLSYIFIKKILNL- 116

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
                     Y    K   L      +N K+ +  +++I +GC+  CT+C++P T+G E 
Sbjct: 117 ----------YLKTKKKILLIKKKNNFNIKKNILNYISIMKGCNHSCTYCIIPQTKGKEF 166

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
             S S + +     I     EITLLGQNVN++  K ++     F+ L++++S+IK + R+
Sbjct: 167 YYSFSYIFNYIINNIKKKTTEITLLGQNVNSYYNKNVN-----FNSLIFNISKIKNIKRI 221

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
            + +S+  D +      + ++  +  ++HLP+QSGS+ ILK MNR++    Y   I +I+
Sbjct: 222 NFLSSNIIDFNKNFYNLYKNVKKISNHIHLPIQSGSNLILKKMNRKYNLNHYICFIKKIQ 281

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
            ++     S+D IV FP E   DF  T+ ++ KI +   + F YS    T   N  E   
Sbjct: 282 KIKFT-TFSTDIIVSFPNENFFDFDQTLKVLKKIKFLDIYYFLYSKLRNTISFNFKEN-S 339

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACV 410
             VK  +L   QK + +     N+  V
Sbjct: 340 FFVKKFKLFIFQKSIIKNYYLLNNRVV 366


>gi|260427804|ref|ZP_05781783.1| conserved hypothetical protein [Citreicella sp. SE45]
 gi|260422296|gb|EEX15547.1| conserved hypothetical protein [Citreicella sp. SE45]
          Length = 454

 Score =  143 bits (360), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 124/448 (27%), Positives = 198/448 (44%), Gaps = 37/448 (8%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC   + DS R+     ++GY        AD +++NTC   + A  +    +G   + 
Sbjct: 34  SLGCPKALVDSERILTRLRAEGYGISPDYAGADAVIVNTCGFLDSAKAESLEAIGEALS- 92

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
           +N R        V+V GC+  AE E I    P V  V GP  Y             ++V+
Sbjct: 93  ENGR--------VIVTGCLG-AEPEYITGVHPRVLAVTGPHQY-------------EQVL 130

Query: 151 DTDYSV----EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           D  +       D F  L +  GG        ++L I EGC+  C FC++P  RG   SR 
Sbjct: 131 DAVHGAVPPSPDPFVDL-LPAGGVKLTPRHYSYLKISEGCNHACKFCIIPDMRGKLASRP 189

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRY 265
              V+ EA KL++ GV E+ ++ Q+ +A+     D  EK     L   L E+   VR+ Y
Sbjct: 190 HRAVLREAEKLVEAGVKELLVISQDTSAYGTDWKDRTEKAPILSLARDLGELGAWVRMHY 249

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
              +P       + A G +   +PYL +P Q      LK M R   A      I   R+ 
Sbjct: 250 VYPYPHVRELIPLMAEGKV---LPYLDIPFQHAHPDTLKRMARPAAAARTLDEIAAWRAA 306

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P+I + S FIVG+PGET+++F+  +D +D+    +   F+Y    G   + + + V   
Sbjct: 307 CPEIVLRSTFIVGYPGETEEEFQTLLDWMDEARLDRVGCFQYENVDGARSNALPDHVPAE 366

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE--KHGKEKGKLVGRSPWLQSVVLNSK 443
           +K ER     +K ++   +   A VGQ IEV+++  +      +    +P +   +   +
Sbjct: 367 LKQERWDRFMEKAQQISEANLAAKVGQRIEVIVDLVEDDAATCRTKADAPEIDGNLFIDE 426

Query: 444 NH---NIGDIIKVRITDVKISTLYGELV 468
            H     GDI+ V + +     L+G LV
Sbjct: 427 GHEKLTPGDIVTVEVDEAGEYDLWGRLV 454


>gi|42527391|ref|NP_972489.1| MiaB-like tRNA modifying enzyme [Treponema denticola ATCC 35405]
 gi|41817976|gb|AAS12400.1| MiaB-like tRNA modifying enzyme [Treponema denticola ATCC 35405]
          Length = 468

 Score =  143 bits (360), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 115/452 (25%), Positives = 205/452 (45%), Gaps = 46/452 (10%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGY-----ERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           +++ GC++N  +S  +   F   G+     E   S+    L ++NTC +  KA +K    
Sbjct: 9   IETLGCRLNQVESEALAVRFAECGFDVFSKEAETSILPVKLCIVNTCTVTGKAEQKA--- 65

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT--YYRLPELLE 141
               R L    +KE  + +++V GC A+ E + I + +  +    G +      LP+ L+
Sbjct: 66  ----RRLIRLLLKEHEESVILVTGCYAELEADSIEKINKRIIAFSGKKKDELDGLPQFLK 121

Query: 142 RARFGKRVVDTD---------------YSVEDKFERLSIVDGGYNRKRGVT--------- 177
            +    + +  D               Y+ ED+ ++  ++     RK             
Sbjct: 122 DSCLKNKDLKEDTVNLKKNLLIFRNEIYAKEDQQDKSFLLKETERRKSMFKLSSPVFVFH 181

Query: 178 --AFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW 235
             A L IQ+GC+  C +C +   RG  +S    + V    ++  NG  E+ L G N++ +
Sbjct: 182 SRASLKIQDGCNNACAYCRIRLARGTSVSLPAEEAVRRIVQIEKNGAAEVVLSGVNLSQY 241

Query: 236 RGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPV 295
           R +   G    F++LL  L E    +RLR ++ +P  + D +++   +  +  P+ HL +
Sbjct: 242 RDETYGG----FANLLAKLLENTKKIRLRISSMYPECVDDGILEIVANKRIC-PHFHLSI 296

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
           QSGSD+ILK+MNR +   + R  I+ +R  + +  I  D I GFP ET++DF  T  + +
Sbjct: 297 QSGSDKILKAMNRPYREADIRMAINNLRKAKDNPFIGCDIITGFPSETEEDFLQTFKMCE 356

Query: 356 KIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIE 415
            +       F +S R GT   +M  +V E     R   L +   +   S+  +C G++  
Sbjct: 357 DLKIPGIHVFPFSARPGTKAFSMRPKVPEREAGRRASLLSELSGKNYQSYLASCNGKLFF 416

Query: 416 VLIEK-HGKEKGKLVGRSPWLQSVVLNSKNHN 446
            +IEK    E  ++V  +     +V+N K  N
Sbjct: 417 GVIEKPQNNEDLRIVTENYLSLPLVVNKKAEN 448


>gi|320108291|ref|YP_004183881.1| MiaB-like tRNA modifying enzyme YliG [Terriglobus saanensis SP1PR4]
 gi|319926812|gb|ADV83887.1| MiaB-like tRNA modifying enzyme YliG [Terriglobus saanensis SP1PR4]
          Length = 560

 Score =  143 bits (360), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 123/475 (25%), Positives = 212/475 (44%), Gaps = 77/475 (16%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ DS  M  M    G E   +  DAD+IV+NTC   + A ++    +  I  +
Sbjct: 64  SLGCPKNLVDSEVMMGMLHHAGAELTPAASDADVIVINTCSFIDSAKQES---VNTILEM 120

Query: 91  KNSRIKEGGDLL-VVVAGCVAQAEGEEILRRSPIVNVVVG-------------------- 129
              ++  GG    ++VAGC+ +   +EI++  P V+ VVG                    
Sbjct: 121 VQHKVANGGRAQKIIVAGCLVERYRDEIMKNIPEVDAVVGTGELDGILAAAGIHQPKNDS 180

Query: 130 PQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRG-------------- 175
           P        L++RA          +S  +  E+ S  +G    ++G              
Sbjct: 181 PFNILSESSLIDRAPSAVH----KHSQTEVNEQASRAEGNLREQQGRFSRMDWDGATAAL 236

Query: 176 -----------------VTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLI 218
                             +A++ I EGCD  C FC++P  RG   SR +  V+ EA  L+
Sbjct: 237 PSYLYDDETPRILTTPRASAYIKIAEGCDHPCGFCIIPQLRGKFRSRRIGSVLAEAASLL 296

Query: 219 DNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK----GLVR-LRYTTSHPRDM 273
             GV EITL+GQ+   + G+ L G K   + LL +L+ +     G ++ LR+  ++P  +
Sbjct: 297 KQGVREITLIGQDTTCY-GEDL-GMKDGLATLLEALATMNVEGIGPIKWLRFLYAYPNKV 354

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
           +  L++     D +  YL +P+Q  +   LK M R  +   + ++I++ R++ P I I +
Sbjct: 355 TTKLLETIAAHDNISKYLDVPLQHAAAGTLKRMKRGGSGAIFLKMIEKARNIVPGIVIRT 414

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE---NVKAER 390
            FIVGFPGET  +F      + +        F YS   G    ++ E+V +     +  R
Sbjct: 415 SFIVGFPGETAAEFEELESFIQQARIDWLGVFTYSDEEGAAAFDLGEKVPKRTIEARRRR 474

Query: 391 LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-----KGKLVGRSPWLQSVVL 440
           ++  Q+K+  +     +  +G+ +EVL+E   +E     +G+ +  +P +   VL
Sbjct: 475 IMRTQQKISAKA---REQWIGKQMEVLVEGVSEETDLLWEGRTMLHAPEIDGKVL 526


>gi|57168992|ref|ZP_00368121.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Campylobacter coli
           RM2228]
 gi|57019658|gb|EAL56347.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Campylobacter coli
           RM2228]
          Length = 439

 Score =  143 bits (360), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 106/380 (27%), Positives = 185/380 (48%), Gaps = 31/380 (8%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + ++ S GC  N+ DS  M        YE  +    AD++++NTC   + A ++    + 
Sbjct: 3   KLYLMSLGCNKNLVDSEIMLGRL--SAYELCDEPSKADVLIVNTCGFIDSAKKES---IN 57

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            I +L   R K   D L+VV GC+ Q   EE+++  P V++  G   Y R+ E++ +   
Sbjct: 58  AILDLHEQRKK---DSLLVVTGCLMQRYREELMKELPEVDLFTGVGDYERIDEMILKKT- 113

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT-----AFLTIQEGCDKFCTFCVVPYTRG 200
                       + F   + + G  N KR +T     AF+ I EGC++ C+FC +P  +G
Sbjct: 114 ------------NLFSNSTYLQGE-NSKRIITGSNSHAFIKIAEGCNQKCSFCAIPSFKG 160

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
              SR +S ++ E + L+  G  + + + Q+ +++      GEK     L+  + +I+G+
Sbjct: 161 KLKSREISSIIAELKDLVARGYKDFSFIAQDTSSYLFD--KGEKDGLIRLIDEVEKIEGI 218

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
              R    +P   S+ LIK      + + Y  +P+Q  SD +LK M R   +   +++++
Sbjct: 219 KAARILYLYPTSASEALIKRIIASKIFVNYFDMPLQHISDNMLKIMKRGANSTRLKEMLN 278

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
            ++S  PD  + + FIVG PGE+D DF    + +   G+ +   F YS    T   +M E
Sbjct: 279 LMKSA-PDSFLRTGFIVGHPGESDADFGELCEFIKDFGFDRVSVFAYSKEEDTAAFDM-E 336

Query: 381 QVDENVKAERLLCLQKKLRE 400
           QV   V  +RL  ++K + E
Sbjct: 337 QVPFKVINKRLKIIEKIVDE 356


>gi|32266810|ref|NP_860842.1| hypothetical protein HH1311 [Helicobacter hepaticus ATCC 51449]
 gi|81665617|sp|Q7VGL0|RIMO_HELHP RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|32262862|gb|AAP77908.1| conserved hypothetical protein [Helicobacter hepaticus ATCC 51449]
          Length = 448

 Score =  143 bits (360), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 96/395 (24%), Positives = 194/395 (49%), Gaps = 20/395 (5%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           Q   + S GC  N+ DS  M      Q Y     +++AD+I++NTC   E A ++    +
Sbjct: 7   QSLHLISLGCTKNLVDSEVMLGRL--QSYTLTQELENADVIIINTCGFIESAKQES---I 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             I +  ++R K G   L+VV+GC+A+   +E+    P ++++ G   Y ++  ++ + R
Sbjct: 62  QTIFHASSNR-KRGA--LLVVSGCLAERYTKELKEEIPEIDIITGVSDYDKIDSMIAQRR 118

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
               +      + D+     I+   ++      A++ + EGC++ C+FC +P  +G   S
Sbjct: 119 ---SIESAKVFLADEHNERVIIGSSFH------AYIKLSEGCNQACSFCAIPQFKGKLHS 169

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R+L   + E   L + G  + + + Q+ +++  + L G+K     L+ ++  +   +  R
Sbjct: 170 RTLQSTLKELTNLYNQGFRDFSFIAQDSSSYM-RDL-GQKDGLMQLIRAVDNLNLPISAR 227

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
               +P   S  LI++       +PY  +P+Q  +D +LK+M R      + ++++ +R+
Sbjct: 228 ILYLYPSSTSLQLIESIAQSKSFLPYFDMPIQHIADAMLKTMRRGADKATHLELLNAMRA 287

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           V P   + + FI+G P E +  F    D ++   + +   F YSP+ GT   +M  + + 
Sbjct: 288 V-PHNFVRTSFIIGHPNEDEKAFLELHDFIESFAFDRINLFAYSPQEGTAADSMPNRPNT 346

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419
            +  +R+  L K ++ Q  + N A VGQ ++ ++E
Sbjct: 347 KITNQRINTLNKIIQSQYKAHNLALVGQEVDAILE 381


>gi|148925626|ref|ZP_01809314.1| hypothetical protein Cj8486_1492c [Campylobacter jejuni subsp.
           jejuni CG8486]
 gi|145845636|gb|EDK22727.1| hypothetical protein Cj8486_1492c [Campylobacter jejuni subsp.
           jejuni CG8486]
          Length = 439

 Score =  143 bits (360), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 105/375 (28%), Positives = 186/375 (49%), Gaps = 21/375 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + ++ S GC  N+ DS  M        YE  +    AD+I++NTC   + A ++    + 
Sbjct: 3   KLYLMSLGCNKNLVDSEIMLGRL--SAYELCDEPSKADVIIVNTCGFIDSAKKES---IN 57

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            I +L   R K   D L+VV GC+ Q   EE+++  P V++  G   Y R+ E++ +   
Sbjct: 58  AILDLHEQRKK---DSLLVVTGCLMQRYREELMKELPEVDLFTGVGDYERIDEMILKKT- 113

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                ++ Y   +  +R  I+ G  +      AF+ I EGC++ C+FC +P  +G   SR
Sbjct: 114 -NLFSNSTYLQSENSKR--IITGSNSH-----AFIKIAEGCNQKCSFCAIPSFKGKLKSR 165

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            +S ++ E + L+  G  + + + Q+ +++      GEK     L+  + +IKG+   R 
Sbjct: 166 EISSIIAELKDLVARGYKDFSFIAQDTSSYLFD--KGEKDGLIRLIDEVEKIKGIRAARI 223

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
              +P   S+ LIK     ++ + Y  +P+Q  SD +LK M R   +   +++++ ++S 
Sbjct: 224 LYLYPTSASEALIKRIIASEIFVNYFDMPLQHISDNMLKIMKRGANSTRLKEMLNLMKSA 283

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P+  + + FIVG PGE++ DF    + V   G+ +   F YS    T   +M EQV   
Sbjct: 284 -PNSFLRTGFIVGHPGESEADFEELCEFVKDFGFDRVSVFAYSKEEDTAAFDM-EQVPFK 341

Query: 386 VKAERLLCLQKKLRE 400
           V  +RL  ++K + E
Sbjct: 342 VINKRLKIIEKIVDE 356


>gi|89900760|ref|YP_523231.1| ribosomal protein S12 methylthiotransferase [Rhodoferax
           ferrireducens T118]
 gi|122996924|sp|Q21X03|RIMO_RHOFD RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|89345497|gb|ABD69700.1| conserved hypothetical protein [Rhodoferax ferrireducens T118]
          Length = 464

 Score =  143 bits (360), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 114/398 (28%), Positives = 180/398 (45%), Gaps = 43/398 (10%)

Query: 13  MVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHI 72
           M   I      P+  FV S GC   + DS  +     ++GY+   +   ADL+++NTC  
Sbjct: 1   MSEVITKSNTAPKVGFV-SLGCAKALTDSELILTQLSAEGYQTSKTFQGADLVIVNTCGF 59

Query: 73  REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCV----AQAEGEEILRRSPIVNVVV 128
            + A ++    +G         + E G   V+V GC+    A+  G  + +  P V  V 
Sbjct: 60  IDDAVKESLDTIGEA-------LAENGK--VIVTGCLGAKTAEGGGNLVRQMHPSVLAVT 110

Query: 129 GPQTYYRLPELLERARFGKRVVDTDYSVEDKFERL---SIVDGGYNRKRGVTAFLTIQEG 185
           GPQ    + + +  A   K          D F  L   +    G        A++ I EG
Sbjct: 111 GPQATQEVMDAV-HANLPKP--------HDPFIDLVPNAFGVAGIKLTPRHYAYIKISEG 161

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA----------- 234
           C+  CTFC++P  RG  +SR +  V+ EAR L + GV E+ ++ Q+ +A           
Sbjct: 162 CNHRCTFCIIPSMRGDLVSRPIGDVLKEARALFEGGVKELLVISQDTSAYGVDVKYRTGF 221

Query: 235 WRGKGLDGEKCTFSDLLYSLSEIKG-LVRLRYTTSHPRDMSDCL-IKAHGDLDVLMPYLH 292
           W GK         +  L  ++E  G  VRL Y   +P  + D L + A G +   +PYL 
Sbjct: 222 WDGKPTKTRLLELAAALGDMAEPYGAWVRLHYVYPYP-SVDDLLPLMAAGKV---LPYLD 277

Query: 293 LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352
           +P+Q     +LK M R  +  +  + I R R V PDI + S FI GFPGET+++F   +D
Sbjct: 278 VPLQHSHPEVLKRMKRPASGEKNLERIQRWREVCPDIVVRSTFIAGFPGETEEEFSHLLD 337

Query: 353 LVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER 390
            + +    +A  F YSP  G   +++   +   ++ ER
Sbjct: 338 FMREAQIDRAGCFAYSPVQGAVANDIGGMLPIELREER 375


>gi|29346323|ref|NP_809826.1| putative Fe-S oxidoreductase [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|81445146|sp|Q8A9A2|RIMO_BACTN RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|29338218|gb|AAO76020.1| putative Fe-S oxidoreductase [Bacteroides thetaiotaomicron
           VPI-5482]
          Length = 436

 Score =  143 bits (360), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 123/456 (26%), Positives = 216/456 (47%), Gaps = 39/456 (8%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEKVYS 82
           +R  + + GC  N+ DS ++       GY   +  +  + ++ V+NTC     A E+  +
Sbjct: 4   KRIDIITLGCSKNLVDSEQLMRQLEEAGYSVTHDTENPEGEIAVINTCGFIGDAKEESIN 63

Query: 83  FLGRIRNLKNSRIKEGGDLL-VVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
            +     L+ +  KE GDL  + V GC+++   +E+    P V+   G    +   ELL+
Sbjct: 64  MI-----LEFAERKEEGDLKKLFVMGCLSERYLQELAIEIPQVDKFYGK---FNWKELLQ 115

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
               GK      Y  E   ER       Y       A+L I EGCD+ C++C +P   G 
Sbjct: 116 D--LGKT-----YHEELYIERTLTTPKHY-------AYLKISEGCDRKCSYCAIPIITGR 161

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGL 260
            IS+S+ +++DE R L+  GV E  ++ Q +  +   G+D  +K    +L+  +SEI G+
Sbjct: 162 HISKSMEEILDEVRYLVSQGVKEFQVIAQELTYY---GVDLYKKQMLPELIERISEIPGV 218

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
             +R   ++P      L +   + D +  Y+ + +Q  SD +LK M R+ +  +  ++I+
Sbjct: 219 EWIRLHYAYPAHFPTDLFRVMRERDNVCKYMDIALQHISDNMLKLMRRQVSKEDTYKLIE 278

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           + R   P I + +  +VG PGET++DF    + V K  + +  +F YS   GT  +   E
Sbjct: 279 QFRKEVPGIHLRTTLMVGHPGETEEDFEELKEFVRKARFDRMGAFAYSEEEGTYAAQQYE 338

Query: 381 -QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWL 435
             + + VK  RL  L    +      + A +GQ ++V+I++   E    +GR    SP +
Sbjct: 339 DSIPQEVKQARLDELMDIQQGISAELSAAKIGQQMKVIIDR--IEGDYYIGRTEFDSPEV 396

Query: 436 QSVVLNS---KNHNIGDIIKVRITDVKISTLYGELV 468
              VL S   +   +G   +V +TD     LY +++
Sbjct: 397 DPEVLISVSREELEVGQFYQVEVTDADDFDLYAKIL 432


>gi|328950305|ref|YP_004367640.1| MiaB-like tRNA modifying enzyme [Marinithermus hydrothermalis DSM
           14884]
 gi|328450629|gb|AEB11530.1| MiaB-like tRNA modifying enzyme [Marinithermus hydrothermalis DSM
           14884]
          Length = 436

 Score =  143 bits (360), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 127/448 (28%), Positives = 212/448 (47%), Gaps = 38/448 (8%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R  V++ GC++N  +S  +  M  +     V   + ADL V+NTC +   A       + 
Sbjct: 2   RVAVRTLGCKVNQVESDALVGMLKALEPVVVEPEEGADLFVINTCAVTTTAEATARKEIR 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R R       +   +  +VV GC A+ EGE +  +    +VVV       LP+++    F
Sbjct: 62  RAR-------RANPEAFIVVTGCYAELEGEAL--KDLGADVVVPNARKAELPKVILE-HF 111

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G   +  D       E     + G    R V AFL +Q+GC+  C +C++P  RG E  R
Sbjct: 112 G---LPADPVTTPPHEFWGAGERGLLNDR-VRAFLKVQDGCNAGCAYCIIPRLRGRERHR 167

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRG--KGLDGEKCTFSDLLYSLSEIKGLVRL 263
           + +  + EA  L+  GV EI L G  + ++ G  +GL G       L+  L  +   VRL
Sbjct: 168 AHTDALAEAEALLRTGVQEIVLTGVRLGSYAGHPRGLAG-------LVEDLVALGAKVRL 220

Query: 264 RYTTSHPRDMSDCLIKAHG-DLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
             ++  P D    L++        + P+LHL +Q+G+DR+LK M RR+    YR ++ R 
Sbjct: 221 --SSIEPEDTDTALLEVIARHAPQVRPHLHLSLQTGNDRLLKLMGRRYDKAYYRDLVRRA 278

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
             + P  A+++D I G P ET+ + + T+  ++++   +  +F Y+PR  T  +  L QV
Sbjct: 279 YDLIPGFALTTDVIAGLPTETEAEHQETLAFLEELQPVRVHAFTYTPRPKTRAAR-LPQV 337

Query: 383 DENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSV 438
              V+  R   L+ L  +L   ++      +G  +EVL+E+  G E    +G +P    V
Sbjct: 338 PVEVRKRRTRELIALAHELAAARIRPK---LGTRVEVLVERIRGDEA---LGHTPDYYEV 391

Query: 439 VLNSKNH-NIGDIIKVRITDVKISTLYG 465
           V   +     GD + +R+  ++  TL G
Sbjct: 392 VARGRGEARPGDTVWMRVDGIREYTLLG 419


>gi|121613708|ref|YP_001001103.1| putative tRNA modifying protein [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|238065318|sp|A1W162|RIMO_CAMJJ RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|87249647|gb|EAQ72606.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Campylobacter
           jejuni subsp. jejuni 81-176]
          Length = 439

 Score =  143 bits (360), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 105/375 (28%), Positives = 186/375 (49%), Gaps = 21/375 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + ++ S GC  N+ DS  M        YE  +    AD+I++NTC   + A ++    + 
Sbjct: 3   KLYLMSLGCNKNLVDSEIMLGRL--SAYELCDEPSKADVIIVNTCGFIDSAKKES---IN 57

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            I +L   R K   D L+VV GC+ Q   EE+++  P V++  G   Y R+ E++ +   
Sbjct: 58  AILDLHEQRKK---DSLLVVTGCLMQRYREELMKELPEVDLFTGVGDYERIDEMILKKT- 113

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                ++ Y   +  +R  I+ G  +      AF+ I EGC++ C+FC +P  +G   SR
Sbjct: 114 -NLFSNSTYLQSENSKR--IITGSNSH-----AFIKIAEGCNQKCSFCAIPSFKGKLKSR 165

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            +S ++ E + L+  G  + + + Q+ +++      GEK     L+  + +IKG+   R 
Sbjct: 166 EISSIIAELKDLVARGYKDFSFIAQDTSSYLFD--KGEKDGLIRLIDEVEKIKGIRAARI 223

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
              +P   S+ LIK     ++ + Y  +P+Q  SD +LK M R   +   +++++ ++S 
Sbjct: 224 LYLYPTSASEALIKRIIASEIFVNYFDMPLQHISDNMLKIMKRGANSTRLKEMLNLMKSA 283

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P+  + + FIVG PGE++ DF    + V   G+ +   F YS    T   +M EQV   
Sbjct: 284 -PNSFLRTGFIVGHPGESEADFEELCEFVKDFGFDRVSVFAYSKEEDTTAFDM-EQVPFK 341

Query: 386 VKAERLLCLQKKLRE 400
           V  +RL  ++K + E
Sbjct: 342 VINKRLKIIEKIVDE 356


>gi|332297178|ref|YP_004439100.1| Ribosomal protein S12 methylthiotransferase rimO [Treponema
           brennaborense DSM 12168]
 gi|332180281|gb|AEE15969.1| Ribosomal protein S12 methylthiotransferase rimO [Treponema
           brennaborense DSM 12168]
          Length = 508

 Score =  143 bits (360), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 117/444 (26%), Positives = 200/444 (45%), Gaps = 53/444 (11%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA-AEKVYSFL 84
           +FF+  +GC  N  D   +     ++G  +     +AD+I++N+C   E A  E + + L
Sbjct: 3   KFFLDQHGCAKNQVDGELIITRLQNKGLCKTEIAAEADIIIINSCGFIESAKTESLNALL 62

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
                  +++I        ++AGC+A+   E+     P  + + G      +  L+E   
Sbjct: 63  EAKEAYPDAKI--------LLAGCLAERYAEQFAEALPEADGIFGNGDLTAIDSLVEPLL 114

Query: 145 FGKRVV----DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
            G   V            + E LS            +AF+ I EGCD  C+FC +P  RG
Sbjct: 115 SGGHPVVKPAQQGVCCGSRSELLSFPG---------SAFVKITEGCDNRCSFCAIPLIRG 165

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW--------------RGKGLDGEKCT 246
              SR    +V E  +L  NG+ EI L+GQ+  A+              R  G  G +  
Sbjct: 166 NLRSRDADDIVREIDELTRNGIFEINLIGQDSAAYGMDGENPHDPAVWARFDGASGTQSP 225

Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306
            + LL  +S + G   LR    HP      ++      + L+ Y  +P QSG+D I+K+M
Sbjct: 226 LARLLEKISALNGSFWLRLLYIHPDHFPPDILPVIARDERLLAYFDIPFQSGADSIIKAM 285

Query: 307 NRRHTAYEYRQIIDRIRSV-----RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
           NR  +   Y  ++  IR          +++ + F+ GFPGET+DD + T   ++ I    
Sbjct: 286 NRTGSRVRYEDMVKNIRGTLDAVKDGGVSLRTTFLTGFPGETEDDAQETERFLENISPDW 345

Query: 362 AFSFKYSPRLGTPGSNMLEQVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLI 418
           +  F YS   GTP +++ +QV   +   +AE L C Q+++  +++  +   + +  +VLI
Sbjct: 346 SGCFPYSKEDGTPAASLKKQVSRKIAEKRAEALRCAQERITAERLKRH---LNRTYDVLI 402

Query: 419 EK-----HGKEKGKLVGRSPWLQS 437
           E+      G+  G  +GR+ W Q+
Sbjct: 403 EEIIEGGDGEGTGLAIGRA-WFQA 425


>gi|86152551|ref|ZP_01070756.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Campylobacter
           jejuni subsp. jejuni HB93-13]
 gi|85843436|gb|EAQ60646.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Campylobacter
           jejuni subsp. jejuni HB93-13]
          Length = 439

 Score =  143 bits (360), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 106/380 (27%), Positives = 186/380 (48%), Gaps = 31/380 (8%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + ++ S GC  N+ DS  M        YE  +    AD++++NTC   + A ++    + 
Sbjct: 3   KLYLMSLGCNKNLVDSEIMLGRL--SAYELCDEPSKADVLIVNTCGFIDSAKKES---IN 57

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            I +L   R K   D L+VV GC+ Q   EE+++  P V++  G   Y R+ E++ +   
Sbjct: 58  AILDLHEQRKK---DSLLVVTGCLMQRYREELMKELPEVDLFTGVGDYERIDEMILKKT- 113

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT-----AFLTIQEGCDKFCTFCVVPYTRG 200
                       + F   + + G  N KR +T     AF+ I EGC++ C+FC +P  +G
Sbjct: 114 ------------NLFSNSTYLQGE-NSKRIITGSNSHAFIKIAEGCNQKCSFCAIPSFKG 160

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
              SR +S ++ E + L+  G  + + + Q+ +++      GEK     L+  + +IKG+
Sbjct: 161 KLKSREISSIIAELKDLVARGYKDFSFIAQDTSSYLFD--KGEKDGLIRLIDEVEKIKGI 218

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
              R    +P   S+ LIK     ++ + Y  +P+Q  SD +LK M R   +   +++++
Sbjct: 219 RAARILYLYPTSASEALIKRIIASEIFVNYFDMPLQHISDNMLKIMKRGANSTRLKEMLN 278

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
            ++SV P+  + + FI+G PGE++ DF      V   G+ +   F YS    T   +M E
Sbjct: 279 LMKSV-PNSFLRTGFIIGHPGESEADFEELCAFVKDFGFDRISVFAYSKEEDTAAFDM-E 336

Query: 381 QVDENVKAERLLCLQKKLRE 400
           QV   V  +RL  ++K + E
Sbjct: 337 QVSFKVINKRLKIIEKIVDE 356


>gi|145344300|ref|XP_001416674.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144576900|gb|ABO94967.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 516

 Score =  143 bits (360), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 103/371 (27%), Positives = 176/371 (47%), Gaps = 33/371 (8%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + FV ++GC  N  DS  M       GYE V++ + AD  ++NTC ++  +   + + + 
Sbjct: 39  KIFVHTFGCSHNHSDSEFMAGQLRRYGYELVDAPEKADGWLVNTCTVKNPSQSAMNTVIE 98

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAE-GEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           R +    +         +V+AGCV Q + G + LR   ++ V        R+ E +ER  
Sbjct: 99  RGKAANKA---------MVIAGCVPQGDKGAKELRDVSLLGVT----QIDRVVEAMERTL 145

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G    DT   +E K   L  +D    R+      L +  GC   CT+C   + RG   S
Sbjct: 146 AG----DTVRMLEKK--ALPSLDLPKVRRNEFVEILPLSTGCLGACTYCKTKHARGDLGS 199

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
             +S +V    + +  GV E+ L  ++  A+ G  L  +       + ++    G V LR
Sbjct: 200 YEISALVSRVEQAMAEGVSEVWLSSEDTGAY-GIDLGTDVAALFRAITAVLPTDGSVMLR 258

Query: 265 YTTSHPRDMSDCLIKAHGDL-------DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
              ++P       I AH D          +  ++H+PVQSGS+ +L+ M R +T  E+++
Sbjct: 259 LGMTNPP-----YILAHLDAVAEAMRHPSVYAWMHIPVQSGSNAVLEGMKREYTVEEFKR 313

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
           + D + +  P + I++D I GFPGETD+ ++ TM L+++  + +    ++ PR GTP + 
Sbjct: 314 VCDTLLAAVPGMVIATDIICGFPGETDEQWQETMSLIEEYKFPEVHISQFYPRPGTPAAK 373

Query: 378 MLEQVDENVKA 388
           M     + VKA
Sbjct: 374 MKRVPTQIVKA 384


>gi|126728064|ref|ZP_01743880.1| MiaB-like Radical SAM protein [Sagittula stellata E-37]
 gi|126711029|gb|EBA10079.1| MiaB-like Radical SAM protein [Sagittula stellata E-37]
          Length = 452

 Score =  142 bits (359), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 115/387 (29%), Positives = 174/387 (44%), Gaps = 32/387 (8%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC   + DS R+     ++GY   +    AD +++NTC   + A  +    +G     
Sbjct: 31  SLGCPKALVDSERILTRLRAEGYGISSDYSGADAVIVNTCGFLDSAKAESLDAIGEALA- 89

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
           +N R        V+V GC+  AE E I    P V  V GP  Y             ++V+
Sbjct: 90  ENGR--------VIVTGCLG-AEPEYITGSHPKVLAVTGPHQY-------------EQVL 127

Query: 151 DTDYSV----EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           D  +       D F  L +   G +       +L I EGC+  C FC++P  RG   SR 
Sbjct: 128 DAVHGAVPPSPDPFIDL-LPSTGVSLTPRHYGYLKISEGCNHKCRFCIIPDMRGRLQSRP 186

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE-KCTFSDLLYSLSEIKGLVRLRY 265
              V+ EA KL++ GV E+ ++ Q+ +A+     D + K  F DL   L ++   VRL Y
Sbjct: 187 ARAVLREAEKLVEAGVKELLVISQDTSAYGTDWKDRDAKFPFVDLARDLGDLGAWVRLHY 246

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
              +P       + A G +   +PYL +P Q      L+ M R   A      I   R+ 
Sbjct: 247 VYPYPHVRQVIPLMAEGKV---LPYLDIPFQHSHTDTLRRMARPAAAERTLDEIAAWRAD 303

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            PDIA+ S FIVG+PGET+ +F+  +D +D+    +   F+Y    G   + + + V E 
Sbjct: 304 CPDIALRSTFIVGYPGETEAEFQHLLDWMDEAQLDRVGCFQYENVDGARSNALPDHVPEE 363

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQ 412
           VKAER     +K +    +   A VGQ
Sbjct: 364 VKAERWARFMEKAQAISEAKLAAKVGQ 390


>gi|282862264|ref|ZP_06271326.1| MiaB-like tRNA modifying enzyme YliG [Streptomyces sp. ACTE]
 gi|282562603|gb|EFB68143.1| MiaB-like tRNA modifying enzyme YliG [Streptomyces sp. ACTE]
          Length = 492

 Score =  142 bits (359), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 129/454 (28%), Positives = 199/454 (43%), Gaps = 55/454 (12%)

Query: 23  VPQRFFVK--SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKV 80
           +P+R  V   + GC  N  DS  +     + G++ V    DAD+ V+NTC   E A +  
Sbjct: 1   MPERRTVALVTLGCARNEVDSEELAGRLAADGWDLVEDASDADVAVVNTCGFVEAAKKDS 60

Query: 81  YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG----------- 129
              L    +LK+     G    VV  GC+A+  G+++    P  + V+G           
Sbjct: 61  VDALLEANDLKD----HGRTQAVVAVGCMAERYGKDLAEALPEADGVLGFDDYADISDRL 116

Query: 130 -------------PQTYYRLPELLERARFGKRVVDTDYSVE------DKFERLSIVDGG- 169
                        P+   +L  +    R    V    ++ E      D  E ++ V G  
Sbjct: 117 QTILNGGIHASHTPRDRRKLLPISPAERQDTAVALPGHAQEIAPAPADLPEGVAPVSGPR 176

Query: 170 --YNRKRGVT--AFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEI 225
               R+ G +  A + +  GCD+ C+FC +P  RG  ISR  S V+ E R L + GV E+
Sbjct: 177 APLRRRLGTSPVASVKLASGCDRRCSFCAIPSFRGSFISRRPSDVLGETRWLAEQGVKEV 236

Query: 226 TLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLD 285
            L+ +N N   GK L G+      LL  L+++ G+ R+R +   P +M   LI       
Sbjct: 237 MLVSEN-NTSYGKDL-GDIRLLETLLPELADVDGIERIRVSYLQPAEMRPGLIDVLTSTP 294

Query: 286 VLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDD 345
            + PY  L  Q  +  +L++M R      + +++D IR   P     S+FIVGFPGET+ 
Sbjct: 295 KVAPYFDLSFQHSAPGVLRAMRRFGDTDRFLELLDTIRGKAPQAGARSNFIVGFPGETEA 354

Query: 346 DFRA-----TMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLRE 400
           D        T   +D IG      F YS   GT       ++D +V AERL  + +   E
Sbjct: 355 DLAELERFLTGARLDAIGV-----FGYSDEEGTEAVGYENKLDADVIAERLAHISQLAEE 409

Query: 401 QQVSFNDACVGQIIEVLIEK-HGKEKGKL-VGRS 432
                 +  VG+ ++VL+E     E G + VGR+
Sbjct: 410 LTSQRAEERVGETLQVLVESVESDEDGPVAVGRA 443


>gi|298385677|ref|ZP_06995235.1| 2-methylthioadenine synthetase [Bacteroides sp. 1_1_14]
 gi|298261818|gb|EFI04684.1| 2-methylthioadenine synthetase [Bacteroides sp. 1_1_14]
          Length = 436

 Score =  142 bits (359), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 123/456 (26%), Positives = 215/456 (47%), Gaps = 39/456 (8%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEKVYS 82
           +R  + + GC  N+ DS ++       GY   +  +  + ++ V+NTC     A E+  +
Sbjct: 4   KRIDIITLGCSKNLVDSEQLMRQLEEAGYSVTHDTENPEGEIAVINTCGFIGDAKEESIN 63

Query: 83  FLGRIRNLKNSRIKEGGDLL-VVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
            +     L+ +  KE GDL  + V GC+++   +E+    P V+   G    +   ELL+
Sbjct: 64  MI-----LEFAERKEEGDLKKLFVMGCLSERYLQELAIEIPQVDKFYGK---FNWKELLQ 115

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
               GK      Y  E   ER       Y       A+L I EGCD+ C++C +P   G 
Sbjct: 116 D--LGKT-----YHEELYIERTLTTPKHY-------AYLKISEGCDRKCSYCAIPIITGR 161

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGL 260
            IS+ + ++VDE R L+  GV E  ++ Q +  +   G+D  +K    +L+  +SEI G+
Sbjct: 162 HISKPMEEIVDEVRYLVSQGVKEFQVIAQELTYY---GVDLYKKQMLPELIERISEIPGV 218

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
             +R   ++P      L +   + D +  Y+ + +Q  SD +LK M R+ +  +  ++I+
Sbjct: 219 EWIRLHYAYPAHFPTDLFRVMRERDNVCKYMDIALQHISDNMLKLMRRQVSKEDTYKLIE 278

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           + R   P I + +  +VG PGET++DF    + V K  + +  +F YS   GT  +   E
Sbjct: 279 QFRKEVPGIHLRTTLMVGHPGETEEDFEELKEFVRKARFDRMGAFAYSEEEGTYAAQQYE 338

Query: 381 -QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWL 435
             + + +K  RL  L    +      + A +GQ ++V+I++   E    +GR    SP +
Sbjct: 339 DSIPQEIKQARLDELMDIQQGISAELSAAKIGQQMKVIIDR--IEGDYYIGRTEFDSPEV 396

Query: 436 QSVVLNS---KNHNIGDIIKVRITDVKISTLYGELV 468
              VL S   +   IG   +V +TD     LY +++
Sbjct: 397 DPEVLISVSGEELEIGQFYQVEVTDADDFDLYAKIL 432


>gi|311898714|dbj|BAJ31122.1| hypothetical protein KSE_53470 [Kitasatospora setae KM-6054]
          Length = 490

 Score =  142 bits (359), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 125/473 (26%), Positives = 207/473 (43%), Gaps = 41/473 (8%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC  N  DS  +     + G+  V+   +AD+ V+NTC   E A +     L    +L
Sbjct: 11  TLGCARNEVDSEELAGRLEADGWRLVDDASEADVAVVNTCGFVEAAKKDSVDALLEANDL 70

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYY----RLPELL------ 140
           K      G    VV  GC+A+  G+E+    P  + V+G   Y     RL  +L      
Sbjct: 71  KG----HGRTQAVVAVGCMAERYGKELADALPEADGVLGFDDYADISSRLNTILSGGHVE 126

Query: 141 ----------------ERARFGKRVVDTDYSV-EDKFERLSIVDGGYN-RKR---GVTAF 179
                           ER      V    +   ED  + ++   G    RKR      A 
Sbjct: 127 AHTPRDRRKLLPLTPVERQAAAAEVALPGHGAPEDLPDGVAPASGPRTLRKRLDDAPVAS 186

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
           + +  GCD+ C+FC +P  RG  ISR  S V++EA  L   GV E+ L+ +N N   GK 
Sbjct: 187 IKLASGCDRRCSFCAIPAFRGSFISRRPSDVLNEAVWLAGQGVREVVLVSEN-NTSYGKD 245

Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
           L G+      LL  ++ + G+ R+R +   P +M   LI      D ++PY  L  Q  +
Sbjct: 246 L-GDIRLLETLLSEIAAVDGIERVRVSYLQPAEMRPGLIDVMTGTDKVVPYFDLSFQHSA 304

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
             +L+ M R  +  ++  +++ IR+  P+    S+FIVGFPGE+++D+      V   G 
Sbjct: 305 PAVLRRMRRFGSTEQFLGLLESIRAKAPEAGARSNFIVGFPGESEEDYAELERFVIHAGL 364

Query: 360 AQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419
                F YS   GT  +    ++D++V  +R+  L K   E      +  +G  + VL+E
Sbjct: 365 DAIGVFGYSDEDGTEAAGYDGKLDQDVVDDRVARLSKLAEELTAQRAEQRIGSKVTVLVE 424

Query: 420 --KHGKEKGKLVGRSPWLQ--SVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
             + G  +G+   ++P     + +L + +  +G   +  +T  +   L  E +
Sbjct: 425 SVEDGVVEGRSAHQAPETDGLTTLLGAPDAVVGRFYRAVVTGTEGVDLVAEAI 477


>gi|237709946|ref|ZP_04540427.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|237725388|ref|ZP_04555869.1| conserved hypothetical protein [Bacteroides sp. D4]
 gi|265753598|ref|ZP_06088953.1| MiaB-like tRNA modifying enzyme YliG [Bacteroides sp. 3_1_33FAA]
 gi|229436075|gb|EEO46152.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4]
 gi|229456039|gb|EEO61760.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|263235312|gb|EEZ20836.1| MiaB-like tRNA modifying enzyme YliG [Bacteroides sp. 3_1_33FAA]
          Length = 432

 Score =  142 bits (359), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 119/448 (26%), Positives = 208/448 (46%), Gaps = 39/448 (8%)

Query: 33  GCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           GC  N+ DS ++     + GY+  +  D    ++ V+NTC     A E+  + +     L
Sbjct: 12  GCSKNLVDSEKLMRQLEANGYKVTHDSDKPQGEIAVINTCGFIGDAKEESINMI-----L 66

Query: 91  KNSRIKEGGDLL-VVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149
           +  + KE G L  + V GC+++   +E+    P V+   G    +   ELL  A  GK  
Sbjct: 67  EFCQAKEEGKLKKLYVMGCLSERYLKELALEIPQVDKFYGK---FNWNELL--ADLGKA- 120

Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209
               Y  E   ER       Y       A+L I EGCD+ C++C +P   G  ISR + +
Sbjct: 121 ----YKAEFTIERTLTTPHHY-------AYLKISEGCDRKCSYCAIPIITGRHISRPMEE 169

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC-TFSDLLYSLSEIKGLVRLRYTTS 268
           ++DE + L+  GV E  ++ Q +  +   G+D  K     +L+  ++ + G+  +R   +
Sbjct: 170 IIDEVKLLVSEGVKEFQIIAQELTYY---GVDLYKSQKLPELIERIANVPGVEWIRLHYA 226

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
           +P    + L +   + D +  Y+ + +Q  SD +L  M R  +  E  ++I++ R   P 
Sbjct: 227 YPAHFPEELFRVMREHDNVCKYMDIALQHISDNMLNKMRRHVSKAETYELIEKFRREVPG 286

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE-QVDENVK 387
           I + +  +VG PGE ++DF    + V K+ + +  +F YS   GT  +   E  +   VK
Sbjct: 287 IHLRTTLMVGHPGEAEEDFEELKEFVKKVRFDRMGAFAYSEEEGTFAAKEYEDSISHEVK 346

Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVVL--- 440
            +RL  L    +E     +   +G+  +V+I++  KE    +GR    SP +   VL   
Sbjct: 347 QQRLDELMALQQEIAGELSQTKIGKEFKVIIDR--KEGDYYIGRTQFDSPEVDPEVLIKA 404

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
           + +   IG+  KV+IT      LY  ++
Sbjct: 405 DDEYLKIGEFYKVKITAADDFDLYASIL 432


>gi|327313609|ref|YP_004329046.1| 30S ribosomal protein S12 methylthiotransferase RimO [Prevotella
           denticola F0289]
 gi|326945425|gb|AEA21310.1| ribosomal protein S12 methylthiotransferase RimO [Prevotella
           denticola F0289]
          Length = 434

 Score =  142 bits (359), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 125/456 (27%), Positives = 204/456 (44%), Gaps = 51/456 (11%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDD--ADLIVLNTCHIREKAAEK----VYSFL 84
           + GC  N+ DS  +   F + GY   +  ++   ++ V+NTC   E A E+    +  F 
Sbjct: 10  TMGCSKNLVDSELIMKQFEANGYHCTHDAENPQGEIAVINTCGFIEAAKEESINTILEFA 69

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R +N + +R+         V GC++Q   +E+    P V+   G   Y +L   L +A 
Sbjct: 70  NRKKNGQLNRL--------YVMGCLSQRYKDELEAELPEVDKFYGKFNYKQLLSDLGKAD 121

Query: 145 F----GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
                G R + T +                       A++ I EGCD+ C +C +P   G
Sbjct: 122 IPACNGVRHLTTPHHY---------------------AYVKIAEGCDRHCAYCAIPLITG 160

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
              SR++  V+DE + L+  GV E  ++ Q +  + G  LDG K   ++L+  +++I+G+
Sbjct: 161 RHHSRTVEDVLDEVKGLVAQGVKEFQIIEQELTYY-GVDLDG-KHHITELISRMADIEGV 218

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
             +R   ++P      L+        +  YL +  Q  SD +L  M+R  T  E   +I 
Sbjct: 219 EWIRLHYAYPNQFPLDLLDVIARKPNVCKYLDIAFQHISDHMLGRMHRHVTKQETLDLIA 278

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
            IR   P I + +  +VGFPGET+ DF      V ++ + +  +F YS   GT  +   E
Sbjct: 279 EIRRRVPGIHLRTTLLVGFPGETEKDFEELKTFVREVRFERMGAFAYSEEEGTYSATHYE 338

Query: 381 -QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWL 435
             V E VK +R+  L K  +          VG++ +V+I++   E    +GR    SP +
Sbjct: 339 DDVPEKVKQQRIDELMKIQQGISEELEGEKVGRVFKVIIDR--TEGEYYIGRTEFCSPEV 396

Query: 436 QSVVL---NSKNHNIGDIIKVRITDVKISTLYGELV 468
              VL     K    G    VRITD     L+GE+V
Sbjct: 397 DPEVLIPIEGKTLQTGRFYDVRITDSDEFDLFGEVV 432


>gi|205356112|ref|ZP_03222879.1| hypothetical protein Cj8421_1497 [Campylobacter jejuni subsp.
           jejuni CG8421]
 gi|205345955|gb|EDZ32591.1| hypothetical protein Cj8421_1497 [Campylobacter jejuni subsp.
           jejuni CG8421]
          Length = 439

 Score =  142 bits (359), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 104/375 (27%), Positives = 186/375 (49%), Gaps = 21/375 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + ++ S GC  N+ DS  M        YE  +    AD++++NTC   + A ++    + 
Sbjct: 3   KLYLMSLGCNKNLVDSEIMLGRL--SAYELCDEPSKADVLIVNTCGFIDSAKKES---IN 57

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            I +L   R K   D L+VV GC+ Q   EE+++  P V++  G   Y R+ E++ +   
Sbjct: 58  AILDLHEQRKK---DSLLVVTGCLMQRYREELMKELPEVDLFTGVGDYERVDEMILKKT- 113

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                ++ Y   +  +R  I+ G  +      AF+ I EGC++ C+FC +P  +G   SR
Sbjct: 114 -NLFSNSTYLQSENSKR--IITGSNSH-----AFIKIAEGCNQKCSFCAIPSFKGKLKSR 165

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            +S ++ E + L+  G  + + + Q+ +++      GEK     L+  + +IKG+   R 
Sbjct: 166 EISSIIAELKDLVARGYKDFSFIAQDTSSYLFD--KGEKDGLIRLIDEVEKIKGIRAARI 223

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
              +P   S+ LIK     ++ + Y  +P+Q  SD +LK M R   +   +++++ ++S 
Sbjct: 224 LYLYPTSASEALIKRIIASEIFVNYFDMPLQHISDNMLKIMKRGANSTRLKEMLNLMKSA 283

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P+  + + FIVG PGE++ DF    + V   G+ +   F YS    T   +M EQV   
Sbjct: 284 -PNSFLRTGFIVGHPGESEADFEELCEFVKDFGFDRVSVFAYSKEEDTAAFDM-EQVSFK 341

Query: 386 VKAERLLCLQKKLRE 400
           V  +RL  ++K + E
Sbjct: 342 VINKRLKIIEKIVNE 356


>gi|212693204|ref|ZP_03301332.1| hypothetical protein BACDOR_02714 [Bacteroides dorei DSM 17855]
 gi|212664309|gb|EEB24881.1| hypothetical protein BACDOR_02714 [Bacteroides dorei DSM 17855]
          Length = 432

 Score =  142 bits (359), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 119/448 (26%), Positives = 208/448 (46%), Gaps = 39/448 (8%)

Query: 33  GCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           GC  N+ DS ++     + GY+  +  D    ++ V+NTC     A E+  + +     L
Sbjct: 12  GCSKNLVDSEKLMRQLEANGYKVTHDSDKPQGEIAVINTCGFIGDAKEESINMI-----L 66

Query: 91  KNSRIKEGGDLL-VVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149
           +  + KE G L  + V GC+++   +E+    P V+   G    +   ELL  A  GK  
Sbjct: 67  EFCQAKEEGKLKKLYVMGCLSERYLKELALEIPQVDKFYGK---FNWNELL--ADLGKA- 120

Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209
               Y  E   ER       Y       A+L I EGCD+ C++C +P   G  ISR + +
Sbjct: 121 ----YKAEFAIERTLTTPHHY-------AYLKISEGCDRKCSYCAIPIITGRHISRPMEE 169

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT-FSDLLYSLSEIKGLVRLRYTTS 268
           ++DE + L+  GV E  ++ Q +  +   G+D  K     +L+  ++ + G+  +R   +
Sbjct: 170 IIDEVKLLVSEGVKEFQIIAQELTYY---GVDLYKSQKLPELIERIANVPGVEWIRLHYA 226

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
           +P    + L +   + D +  Y+ + +Q  SD +L  M R  +  E  ++I++ R   P 
Sbjct: 227 YPAHFPEELFRVMREHDNVCKYMDIALQHISDNMLNKMRRHVSKAETYELIEKFRREVPG 286

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE-QVDENVK 387
           I + +  +VG PGE ++DF    + V K+ + +  +F YS   GT  +   E  +   VK
Sbjct: 287 IHLRTTLMVGHPGEAEEDFEELKEFVKKVRFDRMGAFAYSEEEGTFAAKEYEDSISHEVK 346

Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVVL--- 440
            +RL  L    +E     +   +G+  +V+I++  KE    +GR    SP +   VL   
Sbjct: 347 QQRLDELMALQQEIAGELSQTKIGKEFKVIIDR--KEGDYYIGRTQFDSPEVDPEVLIKA 404

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
           + +   IG+  KV+IT      LY  ++
Sbjct: 405 DDEYLKIGEFYKVKITAADDFDLYASIL 432


>gi|86136536|ref|ZP_01055115.1| RNA modification enzyme, MiaB-family protein [Roseobacter sp.
           MED193]
 gi|85827410|gb|EAQ47606.1| RNA modification enzyme, MiaB-family protein [Roseobacter sp.
           MED193]
          Length = 470

 Score =  142 bits (359), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 131/460 (28%), Positives = 203/460 (44%), Gaps = 47/460 (10%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC   + DS R+     ++GY        AD +++NTC   + A  +    +G     
Sbjct: 33  SLGCPKALVDSERILTRLRAEGYGISPDYAGADAVIVNTCGFLDSAKAESLEAIGEA--- 89

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               +KE G   V+V GC+  AE + I    P +  V GP  Y ++ + +  A      V
Sbjct: 90  ----LKENGK--VIVTGCLG-AEPDYIREHHPRILAVTGPHQYEQVLDAVHAA------V 136

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
             D    + F  L    G     R  + +L I EGC+  C FC++P  RG   SR    V
Sbjct: 137 PAD---PNPFIDLLPATGVQLTPRHFS-YLKISEGCNHKCKFCIIPDMRGKLASRPAHAV 192

Query: 211 VDEARKLIDNGVCEITLLGQN-----------VNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           + EA KL+  GV E+ ++ Q+           VN W    +       S  L  L+    
Sbjct: 193 LREADKLVKAGVKELLVISQDTSAYGLDRKYDVNPWNEGEVRSHILDLSRELGKLAPADE 252

Query: 260 L-VRLRYTTSHP--RDMSDCLIKAHGDLD-VLMPYLHLPVQSGSDRILKSMNR-RHTAYE 314
           L VRL Y   +P  RD    LI    D D  L+PY+ +P Q     +LK M R  HTA  
Sbjct: 253 LWVRLHYVYPYPHVRD----LIPLMADPDNALLPYMDIPFQHSHPDVLKRMARPAHTAKT 308

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
             +I    R + PDI + S FIVG+PGET+ +F+  +D +D+    +   FKY    G  
Sbjct: 309 LTEIA-AWREICPDITLRSTFIVGYPGETEAEFQHLLDWMDEAQLDRVGCFKYENVDGAR 367

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVL---IEKHGKEKGKLVGR 431
            + + + V E VK ER     +K +    +   A VGQI +V+   I++ G    +    
Sbjct: 368 SNALPDHVAEEVKQERWERFMEKAQAISEAKLQAKVGQICQVIVDDIDEDGIATCRTKAD 427

Query: 432 SPWLQSVVL---NSKNHNIGDIIKVRITDVKISTLYGELV 468
           +P +   +     +   ++GD++ V + +     L+G + 
Sbjct: 428 APEIDGNLFIDEGTGGLSVGDLVTVEVDEAGDYDLWGRVA 467


>gi|86149347|ref|ZP_01067578.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Campylobacter
           jejuni subsp. jejuni CF93-6]
 gi|88596431|ref|ZP_01099668.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Campylobacter
           jejuni subsp. jejuni 84-25]
 gi|218563057|ref|YP_002344836.1| putative radical SAM domain family protein [Campylobacter jejuni
           subsp. jejuni NCTC 11168]
 gi|123336653|sp|Q0P8G1|RIMO_CAMJE RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|85840129|gb|EAQ57387.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Campylobacter
           jejuni subsp. jejuni CF93-6]
 gi|88191272|gb|EAQ95244.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Campylobacter
           jejuni subsp. jejuni 84-25]
 gi|112360763|emb|CAL35562.1| putative radical SAM domain family protein [Campylobacter jejuni
           subsp. jejuni NCTC 11168]
 gi|315930834|gb|EFV09826.1| RNA modification enzyme, MiaB family protein [Campylobacter jejuni
           subsp. jejuni 305]
          Length = 439

 Score =  142 bits (358), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 104/375 (27%), Positives = 187/375 (49%), Gaps = 21/375 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + ++ S GC  N+ DS  M  +     YE  +    AD++++NTC   + A ++    + 
Sbjct: 3   KLYLMSLGCNKNLVDSEIM--LGHLSAYELCDEPSKADVLIVNTCGFIDSAKKES---IN 57

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            I +L   R K   D L+VV GC+ Q   EE+++  P V++  G   Y R+ E++ +   
Sbjct: 58  AILDLHEQRKK---DSLLVVTGCLMQRYREELMKELPEVDLFTGVGDYERIDEMILKKT- 113

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                ++ Y   +  +R  I+ G  +      AF+ I EGC++ C+FC +P  +G   SR
Sbjct: 114 -NLFSNSTYLQSENSKR--IITGSNSH-----AFIKIAEGCNQKCSFCAIPSFKGKLKSR 165

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            +S ++ E + L+  G  + + + Q+ +++      GEK     L+  + +IKG+   R 
Sbjct: 166 EISSIIAELKDLVARGYKDFSFIAQDTSSYLFD--KGEKDGLIRLIDEVEKIKGIRAARI 223

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
              +P   S+ LIK     ++ + Y  +P+Q  SD +LK M R   +   +++++ ++S 
Sbjct: 224 LYLYPTSASEALIKRIIASEIFINYFDMPLQHISDNMLKIMKRGANSTRLKEMLNLMKSA 283

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P+  + + FIVG PGE++ DF    + V   G+ +   F YS    T   +M EQV   
Sbjct: 284 -PNSFLRTGFIVGHPGESEADFEELCEFVKDFGFDRISVFAYSKEEDTAAFDM-EQVPFK 341

Query: 386 VKAERLLCLQKKLRE 400
           V  +RL  ++K + E
Sbjct: 342 VINKRLKIIEKIVDE 356


>gi|156938206|ref|YP_001436002.1| RNA modification protein [Ignicoccus hospitalis KIN4/I]
 gi|156567190|gb|ABU82595.1| RNA modification enzyme, MiaB family [Ignicoccus hospitalis KIN4/I]
          Length = 423

 Score =  142 bits (358), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 118/447 (26%), Positives = 216/447 (48%), Gaps = 38/447 (8%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + + ++YGC + + ++ R+ +   S+GYE V   ++AD  ++ TC +R +  +++     
Sbjct: 2   KIYYETYGCAVMLGEAERVLEELKSKGYEVVGRPEEADASIIFTCTVRSETEQRM---AW 58

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           RI+ L  +  K      ++V GC+A A+   +    P  ++V     +      +E A  
Sbjct: 59  RIKELCKASKK------LIVTGCLASAQPGLVKMVCPRASIVSNSSLHE-----IELALK 107

Query: 146 GKRVVDTDYSVEDKFER---LSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           G++     Y ++ +  R     +  GG+         + I +GC   CTFC+    R   
Sbjct: 108 GEK----KYLLKGQRPRDWLKGVTPGGFR------VVIPIADGCLGNCTFCITKVARPRL 157

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI-KGLV 261
           +S+    +++ A K +  G  EI L   +V A+ GK +  E     DLL  L ++    V
Sbjct: 158 VSQRPDSIIEYALKGVKRGAKEIWLTAPDVAAY-GKEIGLE---LPDLLEKLLKVLPENV 213

Query: 262 RLRYTTSHP---RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
            +R     P   R++ D  I    D  V   + HLP+QS SD++L+ M RR+T  E+ +I
Sbjct: 214 YVRVGMMSPDTFREVMDRTIDVMRDPRVFK-FFHLPLQSASDKVLRLMGRRYTYSEFVEI 272

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           ++++R    D  I++D +VGFPGE +DDF  T+  + ++ + +     Y+PR  T G+ M
Sbjct: 273 VNKVRKAFNDPTIATDVMVGFPGEEEDDFELTLKALRELAFERVHLAAYTPRPLTLGARM 332

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSV 438
             QV E+VK+ R+      +    V  +   VG   +  ++++ ++ G  V R  W  + 
Sbjct: 333 -PQVREDVKSRRVKRAMNVIEAVGVEVHKRYVGGKFKAFVDEYDQKHGTFVARL-WNYTP 390

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYG 465
           V+  +  ++G+ I V+I       L G
Sbjct: 391 VVLREESSLGEEIVVKIEGATFYDLRG 417


>gi|302346577|ref|YP_003814875.1| ribosomal protein S12 methylthiotransferase RimO [Prevotella
           melaninogenica ATCC 25845]
 gi|302150859|gb|ADK97120.1| ribosomal protein S12 methylthiotransferase RimO [Prevotella
           melaninogenica ATCC 25845]
          Length = 433

 Score =  142 bits (358), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 128/456 (28%), Positives = 208/456 (45%), Gaps = 51/456 (11%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEK-VYSFLGRI 87
           + GC  N+ DS  +   F   G+   +       ++ V+NTC   E A E+ + + L  I
Sbjct: 10  TMGCSKNLVDSELIMKQFEENGFHCTHDSKRPQGEIAVINTCGFIEAAKEESINTILEFI 69

Query: 88  RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF-- 145
              KN ++ +     + V GC++Q   +E+    P V+   G   Y +L   L +A    
Sbjct: 70  NRKKNGQLNK-----LYVMGCLSQRYKDELEAELPEVDKFYGKFNYKQLLTDLGKADVPA 124

Query: 146 --GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             G R + T                         A++ I EGCD+ C +C +P   G   
Sbjct: 125 CNGVRHLTTPRHY---------------------AYVKIAEGCDRHCAYCAIPLITGRHH 163

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SRS+ +++DE R L+  GV E  ++ Q +  + G  LDG K   ++L+  +++I+G+  +
Sbjct: 164 SRSVEEILDEVRGLVAQGVKEFQIIEQELTYY-GVDLDG-KHHITELISRMADIEGVEWI 221

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R   ++P       +    +   +  YL +  Q  SD +L  M R  +  E   +I  IR
Sbjct: 222 RLHYAYPNQFPLDFLDVIAEKPNVCKYLDIAFQHISDHMLDRMRRHVSKQETLDLIAEIR 281

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML-EQV 382
              P I + +  +VGFPGETD+DF    + V    + +  +F YS   GT  +N   + V
Sbjct: 282 RRVPGIHLRTTLLVGFPGETDEDFEELKEFVTNARFERMGAFSYSEEEGTYSANHYKDDV 341

Query: 383 DENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWL 435
            E+VK  R   L+ +Q+ + E+        VG+  +V+I++  KE    VGR    SP +
Sbjct: 342 PEDVKQARLDELMAIQQGISEE---LEAEKVGKTFKVIIDR--KEGEYYVGRTEFCSPEV 396

Query: 436 QSVVLNS---KNHNIGDIIKVRITDVKISTLYGELV 468
              VL S   K+  IG    V ITD     L+GE+V
Sbjct: 397 DPEVLISSTEKSLRIGKFYDVCITDSDEFDLFGEVV 432


>gi|189499918|ref|YP_001959388.1| MiaB-like tRNA modifying enzyme YliG [Chlorobium phaeobacteroides
           BS1]
 gi|238065323|sp|B3EPX5|RIMO_CHLPB RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|189495359|gb|ACE03907.1| MiaB-like tRNA modifying enzyme YliG [Chlorobium phaeobacteroides
           BS1]
          Length = 442

 Score =  142 bits (358), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 117/400 (29%), Positives = 189/400 (47%), Gaps = 37/400 (9%)

Query: 28  FVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC-HIREKAAEKVYSFLGR 86
           F+ S GC  N  DS R+      +G    N  D+AD++++NTC  I +   E +   L  
Sbjct: 16  FLLSLGCSKNTVDSERLIGQARRKGLSFTNEPDEADIVIINTCGFIADAKTESIDEILAA 75

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
               KN  I+      + V GC++     E+    P V+   G      LPE+L      
Sbjct: 76  AEKRKNGEIE-----ALYVMGCLSALYAAELRAELPEVDRFFGTAD---LPEIL------ 121

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
             ++ T Y    +FER  +    Y       A+L + EGC + C+FC +P  RG   S S
Sbjct: 122 -NILGTAYDPATRFERSLLSPSHY-------AWLKLSEGCSRTCSFCAIPKMRGRYKSES 173

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT-FSDLLYSLSEIK-GLVRLR 264
           +  ++ EA +L   GV E+ L+ Q++  +   GLD    +  +DL+  LS++    +RL 
Sbjct: 174 MEDLLQEATRLKAKGVKELNLIAQDITPY---GLDLYGTSRLNDLMRELSDLNFDWIRLL 230

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           Y  ++P D    +I    + + +  YL +PVQ   DRIL SM R         +++ IR 
Sbjct: 231 Y--AYPLDFPLEVIDTMRERENICDYLDMPVQHICDRILASMKRGIDKQGTIGLLESIRK 288

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE-QVD 383
             P+I + +  IVG+PGET  +F   +  V +  + +   F YS    T   + LE  + 
Sbjct: 289 RNPNIRLRTTMIVGYPGETRAEFEELLQFVREFRFDRLGCFPYSHEEHTAAYDNLEDDIP 348

Query: 384 ENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
           E  K ER   L+ LQ+ + E++   N A   + ++VL+E+
Sbjct: 349 EEEKQERVGELMELQEGISEKK---NRALEEKALKVLVEE 385


>gi|72390349|ref|XP_845469.1| tRNA modification enzyme [Trypanosoma brucei TREU927]
 gi|62359495|gb|AAX79931.1| tRNA modification enzyme, putative [Trypanosoma brucei]
 gi|70802004|gb|AAZ11910.1| tRNA modification enzyme, putative [Trypanosoma brucei brucei
           strain 927/4 GUTat10.1]
          Length = 535

 Score =  142 bits (358), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 123/456 (26%), Positives = 212/456 (46%), Gaps = 39/456 (8%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
            FV ++GC  NV D   M       GY   +    AD  +LN+C ++  + E   S + R
Sbjct: 53  IFVHTFGCGHNVSDGEYMAGQLVESGYNVTDEFGQADAYLLNSCTVKNPSEEHFVSMMNR 112

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           +R+             ++VAGCV QA+     ++   V+VV G ++   +  +++ A  G
Sbjct: 113 VRDTGKP---------LIVAGCVPQADPTN--KQWGDVSVV-GVRSIDCVSYVVQEALQG 160

Query: 147 KRV----VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
             V       D    ++   L  +D    R+      + I  GC   CT+C     RG  
Sbjct: 161 NCVRLLGETEDQRQSNESNELPALDLPKVRRNKYIEIIPISVGCLNNCTYCKTKQARGDL 220

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS----EIK 258
            S  +  +VD  R+++ +GV EI L  ++  A+   G+D      +D++Y L     E++
Sbjct: 221 RSYPVEVIVDRVREVVRDGVKEIRLTSEDSGAY---GID----IGTDVVYLLRAVAVELE 273

Query: 259 GL-VRLRYTTSHPRDMSDCLIKAHGDLDVL-----MPYLHLPVQSGSDRILKSMNRRHTA 312
           G  V LR   S+P  +   L    G   VL       ++H+PVQSGSD IL++M R +T 
Sbjct: 274 GTDVMLRVGMSNPPYL---LRHVDGFATVLKHPNVYEFVHIPVQSGSDSILQTMLREYTV 330

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
            E+   ID IR+  P   +++D I  FPGE + +++ TM+L  +  +      ++ PR  
Sbjct: 331 EEFFMCIDSIRAAVPKATVATDIICAFPGEGESEWQETMELCKRAKFEVINITRFYPRRN 390

Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS 432
           TP + M +Q+  +V   R   L       + +F D+ VG++  V + +   +K  LVG +
Sbjct: 391 TPAAAM-KQIPTDVAKHRTTELTNFFNSYR-TF-DSMVGEVHNVTLLETAHDKHHLVGHT 447

Query: 433 PWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
                V+++     +G+ + V IT     ++ G ++
Sbjct: 448 KNYVQVLVDPAQARMGESVVVVITSATKYSVMGRVL 483


>gi|258404284|ref|YP_003197026.1| MiaB-like tRNA modifying enzyme YliG [Desulfohalobium retbaense DSM
           5692]
 gi|257796511|gb|ACV67448.1| MiaB-like tRNA modifying enzyme YliG [Desulfohalobium retbaense DSM
           5692]
          Length = 438

 Score =  142 bits (358), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 121/455 (26%), Positives = 210/455 (46%), Gaps = 45/455 (9%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQG--YERVNSMDDADLIVLNTCHIREKAAEKVY 81
           P R F  S GC  N  D+   E +  + G  Y     +  AD++++NTC   E A E+  
Sbjct: 6   PLRVFTISLGCPKNRVDT---EFLLGALGGAYAPAQDITSADVVLINTCAFIEPAVEESV 62

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             +  + +  +  +      L+ V GC+    G+++    P V++         LP L E
Sbjct: 63  QQILEVADDISDLVPRP---LLAVTGCLVARYGQDLKAGLPEVDL--------WLP-LAE 110

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNR---KRGVTAFLTIQEGCDKFCTFCVVPYT 198
           + ++G+R+     ++   F       GG  R       +A+L I EGCD  C FC++P  
Sbjct: 111 QDQWGERLAQ---ALGRSFP------GGRERILTTGPASAYLKISEGCDHACRFCIIPQL 161

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258
           RG   SR + ++V EA  L+D G  E+ L+ Q+V+ + G+ L G +     L+ +LS + 
Sbjct: 162 RGPLQSRPVEELVREAGSLVDQGARELVLVAQDVSNY-GQDL-GMRQGLQRLVEALSAVP 219

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGD-LDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
           GL  +R    +P  ++  L++   D   +++P   +P+Q     IL  M R      YR 
Sbjct: 220 GLDWIRLLYLYPVGVTTELLRFLRDSAPLVVPSFDIPLQHAHPDILTQMGRPFARDPYR- 278

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
           +I  +R V P  A+ +  IVG+PGE +  F      V ++ +     F Y    GTP + 
Sbjct: 279 VIATVRDVLPQAALRTSLIVGYPGEKEAHFAYLRQFVQEVRFHNLGVFPYYAEEGTPAAT 338

Query: 378 MLEQVDENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPW 434
           + +QV E VK +R   ++  Q ++ E   +  ++C G  ++VL+E+       L     W
Sbjct: 339 LPDQVPEAVKNDRREQIMGDQAQISE---TILESCQGTTMDVLVERPDPHWPTLFQGRVW 395

Query: 435 LQSVVLNS----KNHNI--GDIIKVRITDVKISTL 463
            Q+  ++       H++  G ++   I + K   L
Sbjct: 396 FQAPEVDGVTYVSGHSLQAGQLVHAEIEESKTYDL 430


>gi|84514448|ref|ZP_01001812.1| RNA modification enzyme, MiaB-family [Loktanella vestfoldensis
           SKA53]
 gi|84511499|gb|EAQ07952.1| RNA modification enzyme, MiaB-family [Loktanella vestfoldensis
           SKA53]
          Length = 462

 Score =  142 bits (358), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 120/459 (26%), Positives = 205/459 (44%), Gaps = 49/459 (10%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC   + DS R+     ++GY        A+ +++NTC   + A  +    +G     
Sbjct: 32  SLGCPKALVDSERILTRLRAEGYAISADYAGAEAVIVNTCGFLDSAKAESLDAIGEA--- 88

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               ++E G   V+V GC+  AE + I    P +  V GP  Y ++ + +  A       
Sbjct: 89  ----LRENGK--VIVTGCLG-AEPDYIREHHPHILAVTGPHQYEQVLDAVHLAVPPS--- 138

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
                  D F  L    G     R  + +L I EGC+  C FC++P  RG+  SR    V
Sbjct: 139 ------PDPFIDLLPATGVSLTPRHYS-YLKISEGCNHKCKFCIIPDMRGLLNSRPAHAV 191

Query: 211 VDEARKLIDNGVCEITLLGQ-----------NVNAWRGKGLDGE-KCTFSDLLYSLSEIK 258
           + EA KL+  GV E+ ++ Q           ++N W+    DG+ +   +DL   L ++ 
Sbjct: 192 LREAEKLVQAGVRELLVISQDTSAYGLDRKYDLNPWK----DGQVRSHITDLTRELGQLG 247

Query: 259 GLVRLRYTTSHP--RDMSDCLI-KAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
             VRL Y   +P  RD+   +   A+G    ++PYL +P Q     +L+ M R     + 
Sbjct: 248 AWVRLHYVYPYPHVRDLIPLMADPANG----VLPYLDIPFQHSHPDVLRRMARPAAGAKT 303

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
              I   R++ PDI + S FIVG+PGET+ +F+  +D +D     +   F+Y    G   
Sbjct: 304 LDEIAAWRAICPDITLRSTFIVGYPGETEAEFQHLLDWLDAAQLDRVGCFQYENVAGARS 363

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVL---IEKHGKEKGKLVGRS 432
           + + + V   VK +R      K +    +   A VG+ +EV+   I++ G    +    +
Sbjct: 364 NTLPDHVPAEVKQDRWDRFMAKAQAISAAKLAAKVGKRLEVIVDDIDEDGIATCRTWADA 423

Query: 433 PWLQSVVL---NSKNHNIGDIIKVRITDVKISTLYGELV 468
           P +   +     ++  ++GDI++V + +     L+G L 
Sbjct: 424 PEIDGNLFIDEGTEALSVGDIVQVVVDEAGEYDLWGGLA 462


>gi|300788129|ref|YP_003768420.1| 2-methylthioadenine synthetase [Amycolatopsis mediterranei U32]
 gi|299797643|gb|ADJ48018.1| 2-methylthioadenine synthetase [Amycolatopsis mediterranei U32]
          Length = 478

 Score =  142 bits (358), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 125/482 (25%), Positives = 210/482 (43%), Gaps = 57/482 (11%)

Query: 13  MVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHI 72
           M S   D    P+R  + + GC  N  DS  +     + G+E     +D+D++V+NTC  
Sbjct: 1   MPSPATDPA-APRRVSLLTLGCARNEVDSEELAGRLAAGGWELAADPEDSDVVVVNTCGF 59

Query: 73  REKAA-EKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ 131
            E A  + V + L      K           VV  GC+A+  G E+    P  + V+G  
Sbjct: 60  VESAKKDSVDTLLAASDTGKK----------VVAVGCMAERYGHELADSLPEADAVLGFD 109

Query: 132 TYYRLPELLERARFGKRVVDTDYSVEDKFERLSI-------------VDGGYNRKRGV-- 176
            Y  L   L+    G+++    ++  D+ + L I             V G      G   
Sbjct: 110 HYADLSARLDDVVAGRKIAS--HTPGDRRKLLPISPVQRPAAAETVEVPGHAQHGWGPRV 167

Query: 177 ---------TAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITL 227
                     A L I  GCD+ C+FC +P  RG  +SR   ++V EA  L ++GV E+ L
Sbjct: 168 LRTRLDDAPVAALKIASGCDRRCSFCAIPSFRGSFVSRQPDEIVAEAMWLAEHGVKELFL 227

Query: 228 LGQNVNAWRGK--GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLD 285
           + +N  ++ GK  G DG       LL  L+EI G+ R+R +   P +    L+KA     
Sbjct: 228 VSENSTSY-GKDFGRDG-ATALERLLPRLAEIDGIERVRVSYLQPAETRPQLVKAIATTP 285

Query: 286 VLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDD 345
            +  Y  L  Q  S+++L+ M R  +   +  + ++IR   P+  I ++ IVGFPGET+ 
Sbjct: 286 GVAEYFDLSFQHSSEQVLRRMRRFGSTDSFLALCEQIREYAPEAGIRTNVIVGFPGETEH 345

Query: 346 DFRA-----TMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLRE 400
           D        T   +D +G      F YS   GT       ++D      R+  +   + E
Sbjct: 346 DLAELERFLTGARLDAVGV-----FGYSDEDGTEAETFDGKLDPEEVGRRVTRISALVEE 400

Query: 401 QQVSFNDACVGQIIEVLIE--KHGKEKGKLVGRSPWL--QSVVLNSKNH-NIGDIIKVRI 455
                 +  +G  ++VL+E    G+  G+   ++P +  + ++L++     +GD ++  +
Sbjct: 401 LTTQRAEDRIGTFVDVLVELDDDGELTGRAAHQAPEVDGECIILDAPEKVQVGDFLRCEV 460

Query: 456 TD 457
            D
Sbjct: 461 VD 462


>gi|94969171|ref|YP_591219.1| hypothetical protein Acid345_2144 [Candidatus Koribacter versatilis
           Ellin345]
 gi|123381489|sp|Q1IPQ5|RIMO_ACIBL RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|94551221|gb|ABF41145.1| SSU ribosomal protein S12P methylthiotransferase [Candidatus
           Koribacter versatilis Ellin345]
          Length = 504

 Score =  142 bits (358), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 131/499 (26%), Positives = 217/499 (43%), Gaps = 66/499 (13%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA-EKVYS 82
           P++    S GC  N+ DS  M  +  + G E     +DAD+IV+NTC   + A  E V +
Sbjct: 18  PKKVGFVSLGCPKNLVDSEVMMGLLATNGAEITARAEDADIIVVNTCSFIDTAKQESVDT 77

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSP-------------------- 122
            L    +    R ++     ++VAGC+ +    EI +  P                    
Sbjct: 78  ILEMAGHKATGRAQK-----LIVAGCLVERYRNEIQKNIPEVDAVVGTGELEAILAASGI 132

Query: 123 ------------IVNVVVGPQTYYR----LPELLERARFGKRV-VDTDYSVEDKFERLSI 165
                       I+N     Q         PE   R   G+    D D +V D    L  
Sbjct: 133 EPRKSEANSPFVILNSTSASQQLKSGIADRPEGAAREEAGRFARTDWDGAVADLPNYL-- 190

Query: 166 VDGGYNRKRGVT---AFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGV 222
            D    R        A++ + EGCD  C+FC++P  RG   SR    VV EA +L   GV
Sbjct: 191 YDENTPRVLATPKYMAYIKVAEGCDHPCSFCIIPQLRGKFRSRRFESVVAEAERLAKQGV 250

Query: 223 CEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHG 282
            EITL+GQ+   + G+ L G K   + LL  L++I+ L  +R+  ++P  ++  L++   
Sbjct: 251 KEITLIGQDTTCY-GEDL-GLKDGLAQLLERLAQIEELQWVRFLYAYPNKITKRLLQTIA 308

Query: 283 DLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGE 342
           D   +  Y+ +P+Q  +  +LK M R      + + I+ +R V PD+ + + FIVGFPGE
Sbjct: 309 DNPKIPKYMDVPLQHSAANVLKRMKRGAHGDIFLKSIEEMRRVIPDLTLRTSFIVGFPGE 368

Query: 343 TDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE---NVKAERLLCLQKKLR 399
           T++DF    + V          F YS   G     + E+V       + ++L+ LQK++ 
Sbjct: 369 TEEDFNQLCEFVKAAQIDWLGVFSYSDEEGAKAFALDEKVPPREIERRRKKLMSLQKQIS 428

Query: 400 EQQVSFNDACVGQIIEVLIEKHGKE-----KGKLVGRSPWLQSVV-----LNSKNHNIGD 449
           +++     A +G+  +V++E   +E     +G+    +P +   V        +N   G 
Sbjct: 429 KKK---RKALIGREFDVILEGPSEETDLLWEGRTAMHAPEIDGKVYINDFAEHENVEPGQ 485

Query: 450 IIKVRITDVKISTLYGELV 468
           + +  IT+     L   L+
Sbjct: 486 VFRCEITEAHDYDLVARLL 504


>gi|319902104|ref|YP_004161832.1| SSU ribosomal protein S12P methylthiotransferase [Bacteroides
           helcogenes P 36-108]
 gi|319417135|gb|ADV44246.1| SSU ribosomal protein S12P methylthiotransferase [Bacteroides
           helcogenes P 36-108]
          Length = 432

 Score =  142 bits (357), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 121/450 (26%), Positives = 209/450 (46%), Gaps = 39/450 (8%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDD--ADLIVLNTCHIREKAAEKVYSFLGRIR 88
           + GC  N+ DS  +       GY   +  +     + V+NTC     A E+  + +    
Sbjct: 10  TLGCSKNLVDSEHLMRQLEGVGYHVTHDSEHPKGQIAVINTCGFIGDAKEESINMI---- 65

Query: 89  NLKNSRIKEGGDL-LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147
            L+ ++ KE GDL  + V GC+++   +E+    P V+   G   +  L + L +A    
Sbjct: 66  -LEFAQAKEAGDLEKLYVMGCLSERYLKELAVEIPQVDKFYGKFNWKELLQDLGKA---- 120

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
                 Y  E   ER       Y       A+L I EGCD+ C++C +P   G  +SR +
Sbjct: 121 ------YHDELHIERTLTTPKHY-------AYLKISEGCDRKCSYCAIPIITGKHVSRPM 167

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYT 266
            +++DE + L+  GV E  ++ Q +  +   G+D  +K    +L+  +SEI G+  +R  
Sbjct: 168 EEILDEVKYLVAEGVKEFQVIAQELTYY---GVDLYKKQMLPELIEHISEIPGVEWIRLH 224

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
            ++P      L +   +   +  Y+ + +Q  SD +L  M R  T  E  Q+I++ R+  
Sbjct: 225 YAYPAHFPMELFRVMRERSNVCKYMDIALQHISDNMLMRMRRHVTKAETYQLIEKFRNEV 284

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE-QVDEN 385
           P I + +  +VG+PGET+ DF    D V K+ + +  +F YS   GT  +   E  V + 
Sbjct: 285 PGIHLRTTLMVGYPGETEADFEELKDFVHKVRFDRMGAFAYSEEEGTYAAATYEDSVPQE 344

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVVL- 440
           VK +RL  L    +      + A +G+ ++V+I++   E    VGR    SP +   VL 
Sbjct: 345 VKQKRLDDLMTIQQGISAELSTAKIGKRMKVIIDR--LEGDYYVGRTEFDSPEVDPEVLI 402

Query: 441 --NSKNHNIGDIIKVRITDVKISTLYGELV 468
               K+  IG+  +  I +     L+G++V
Sbjct: 403 KRKDKDLLIGNFYQTEIINSDDFDLFGQIV 432


>gi|271963703|ref|YP_003337899.1| RNA modification enzyme, MiaB-family [Streptosporangium roseum DSM
           43021]
 gi|270506878|gb|ACZ85156.1| RNA modification enzyme, MiaB-family [Streptosporangium roseum DSM
           43021]
          Length = 469

 Score =  142 bits (357), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 121/460 (26%), Positives = 205/460 (44%), Gaps = 48/460 (10%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC  N  DS  +     + G++  +  DD D+IV+NTC   + A +     L      
Sbjct: 11  TLGCARNEVDSEELAARLEAAGWQVGD--DDPDVIVVNTCGFIDSAKKDSIDTL---LAA 65

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
            +S  K      VV AGC+A+  G+++    P    V+    Y ++   L+    GK +V
Sbjct: 66  ADSGAK------VVAAGCMAERYGDQLADALPEAAAVISFDDYTQIGTRLDDVLEGKPLV 119

Query: 151 DTDYSVEDKFERLSIVD-----------GGYN---------------RKR---GVTAFLT 181
              +S  D+   L I              G+                RKR   G  A L 
Sbjct: 120 P--HSPRDRRTLLPISPVERAAAPKANIPGHGELPDGLAPASGPRPLRKRLGDGPVASLK 177

Query: 182 IQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD 241
           +  GCD+ CTFC +P  RG  +SRS  ++V EA  L   GV E+ L+ +N  ++ GK L 
Sbjct: 178 LASGCDRRCTFCAIPAFRGAYVSRSPEELVSEAAWLAGQGVKELVLVSENSTSY-GKDL- 235

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
           G+      LL SL+  +G+ R+R +   P ++   L++     + + PY  L  Q  S  
Sbjct: 236 GDLRALEKLLPSLAATEGIERVRVSYLQPAELRPGLLEMIASTESVAPYFDLSFQHASGS 295

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
           +L+ M R      +  +++ +R+  P+  + S+FIVGFPGET+++F      + +     
Sbjct: 296 VLRRMRRFGDPRRFLDLLESVRATAPEAGVRSNFIVGFPGETEEEFAELTAFLQEARLDV 355

Query: 362 AFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK- 420
              F YS   GT  +++  ++D+     R+  L +   E      +  +G  ++VLIE+ 
Sbjct: 356 IGVFGYSDEDGTEAASLPGKLDQETVDARVAALTELAEELMAQRAEERIGTEVDVLIEED 415

Query: 421 --HGKEKGKLVGRSPWLQ-SVVLNSKNHNIGDIIKVRITD 457
              G  +G+   + P +  SV +       G I++  + D
Sbjct: 416 LGDGGYEGRAAHQGPEVDGSVTVQGIGLVPGQIVRAVVVD 455


>gi|152992605|ref|YP_001358326.1| tRNA modifying enzyme [Sulfurovum sp. NBC37-1]
 gi|151424466|dbj|BAF71969.1| tRNA modifying enzyme [Sulfurovum sp. NBC37-1]
          Length = 417

 Score =  142 bits (357), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 107/375 (28%), Positives = 189/375 (50%), Gaps = 38/375 (10%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDD--ADLIVLNTCHIREKAAEK 79
           +  ++ F K++GC+ N +D+  M     S+  E   S DD  +D+IV+N+C +   A   
Sbjct: 1   MSSKKVFFKTFGCRTNQFDTQVM----MSKLSEFELSQDDTQSDIIVVNSCTVTNGADSS 56

Query: 80  VYSFLGRI-RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPE 138
           V +++  I R   N+R        V++AGC + ++GE +     +  V+ G      + E
Sbjct: 57  VRNYISSIQRKNPNAR--------VILAGCGSHSKGEALFEDEKVFGVM-GHSEKENINE 107

Query: 139 LLER-ARFGKRVVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
           +L++  RF        Y + D  E +  +IV+    + R   AF+ IQEGCD  C++C++
Sbjct: 108 ILKKETRF--------YEIGD-LEHIDSTIVEEFVGKSR---AFIKIQEGCDFRCSYCII 155

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
           P  RG   S     ++++ RKL  NG  E  L G NV ++ G+  D    + + LL  +S
Sbjct: 156 PAVRGNARSHREETILEQIRKLAANGFGEFILTGTNVGSY-GRDHD---TSMAKLLKKMS 211

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
            I+G+ R+R  +  P  + D  ++   +   +  +LH+ +Q  SDR+L+ MNRR+     
Sbjct: 212 MIRGVRRIRIGSLEPVQIDDEFMELLSE-PWMAKHLHIALQHTSDRMLELMNRRNRFATD 270

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
            ++  RI       A+ +D+IVG PGE + +++  +  V ++      +F YS R  T  
Sbjct: 271 LELFHRI--AEKGYALGTDYIVGHPGEDEKEWKEGISRVKELPLTHVHAFSYSKRDNTAS 328

Query: 376 SNMLEQVDENVKAER 390
           + M  ++  N+  ER
Sbjct: 329 AVMKPEIRGNIAKER 343


>gi|86151990|ref|ZP_01070203.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Campylobacter
           jejuni subsp. jejuni 260.94]
 gi|85841098|gb|EAQ58347.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Campylobacter
           jejuni subsp. jejuni 260.94]
          Length = 439

 Score =  142 bits (357), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 103/371 (27%), Positives = 184/371 (49%), Gaps = 21/371 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + ++ S GC  N+ DS  M        YE  +    AD++++NTC   + A ++    + 
Sbjct: 3   KLYLMSLGCNKNLVDSEIMLGRL--SAYELCDEPSKADVLIVNTCGFIDSAKKES---IN 57

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            I +L   R K   D L+VV GC+ Q   EE+++  P V++  G   Y R+ E++ +   
Sbjct: 58  AILDLHEQRKK---DSLLVVTGCLMQRYREELMKELPEVDLFTGVGDYERIDEMILKKT- 113

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                ++ Y   +  +R  I+ G  +      AF+ I EGC++ C+FC +P  +G   SR
Sbjct: 114 -NLFSNSTYLQSENSKR--IITGSNSH-----AFIKIAEGCNQKCSFCAIPSFKGKLKSR 165

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            +S ++ E + L+  G  + + + Q+ +++      GEK     L+  + +IKG+   R 
Sbjct: 166 EISSIIAELKDLVARGYKDFSFIAQDTSSYLFD--KGEKDGLIRLIDEVEKIKGIRAARI 223

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
              +P   S+ LIK     ++ + Y  +P+Q  SD +LK M R   +   +++++ ++S 
Sbjct: 224 LYLYPTSASEALIKRIIASEIFVNYFDMPLQHISDNMLKIMKRGANSTRLKEMLNLMKST 283

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P+  + + FIVG PGE++ DF    + V   G+ +   F YS    T   +M EQV   
Sbjct: 284 -PNSFLRTGFIVGHPGESEADFEELCEFVKDFGFDRVSVFAYSKEEDTAAFDM-EQVPFK 341

Query: 386 VKAERLLCLQK 396
           V  +RL  ++K
Sbjct: 342 VINKRLKIIEK 352


>gi|255075877|ref|XP_002501613.1| predicted protein [Micromonas sp. RCC299]
 gi|226516877|gb|ACO62871.1| predicted protein [Micromonas sp. RCC299]
          Length = 435

 Score =  142 bits (357), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 131/459 (28%), Positives = 207/459 (45%), Gaps = 48/459 (10%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +  VK++GC  N  DS  M     + GY+ V   DDAD+ V+NTC ++  +   + + + 
Sbjct: 8   KVHVKTFGCSHNHSDSEFMAGQLGAYGYDLVTDPDDADVWVVNTCTVKNPSQSAMNTVI- 66

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAE--GEEILRRSPIVNVVVGPQTYYRLPELLERA 143
                  ++ K  G  LV+ AGCV Q +   +E+   S     ++G     R+ +++ER 
Sbjct: 67  -------TKGKAQGKKLVI-AGCVPQGDKKAKELEDLS-----LIGVTQIDRIVDVVERT 113

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             G    D    +E K   L  +D    R+      L +  GC   CT+C   + RG   
Sbjct: 114 LAG----DAVRLLEKK--PLPSLDLPKVRRNEHVEILPLSTGCLGQCTYCKTKHARGELG 167

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI---KGL 260
           S S   +V   +  I  GV EI L  ++  A+   G+D      + LL  L+ +    G 
Sbjct: 168 SYSPEALVQRVQTAIAEGVTEIWLSSEDTGAY---GID-LGTDITRLLRDLTAVLPTDGS 223

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDL-------DVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
             LR   ++P       I AH D          +  +LH+PVQ+GSD +L  M R +   
Sbjct: 224 CMLRLGMTNPP-----YILAHLDAVAEAMHHPSVYAFLHIPVQAGSDAVLDRMKREYVVA 278

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
           E+ ++ D + +  P I I++D I GFPGET +D+  TM L  K  + +    ++ PR GT
Sbjct: 279 EFEKVADTLLAKVPGITIATDIICGFPGETSEDWEKTMALCRKYEFVELHLSQFYPRPGT 338

Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSP 433
           P + M ++VD      R   L   +  +    +DA VG    V +    K+K  LVG + 
Sbjct: 339 PAARM-KRVDTKEVKRRSRELTAYI--ESYRPHDALVGTTQRVWVTDVAKDKVSLVGHTK 395

Query: 434 WLQSVVLNSKNHN----IGDIIKVRITDVKISTLYGELV 468
               V+L     N    +G   +VRI D     + GE++
Sbjct: 396 SYVQVLLPGGEANRARLMGKSAEVRIIDAHRWHVTGEVI 434


>gi|94267152|ref|ZP_01290784.1| Protein of unknown function UPF0004 [delta proteobacterium MLMS-1]
 gi|93452120|gb|EAT02794.1| Protein of unknown function UPF0004 [delta proteobacterium MLMS-1]
          Length = 323

 Score =  142 bits (357), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 98/301 (32%), Positives = 156/301 (51%), Gaps = 16/301 (5%)

Query: 178 AFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG 237
           A+L + EGCD  C++C++P  RG   SR L  ++ EAR L   GV E+TL+ Q++ A+  
Sbjct: 27  AYLKVTEGCDNRCSYCLIPALRGPLRSRPLPDLLLEARALAAAGVKELTLVAQDLTAY-- 84

Query: 238 KGLDGEKCT-FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQ 296
            GLD        +LL +L     +  LR    +P  + + L++   +   L+PY  LP Q
Sbjct: 85  -GLDQRGAPRLPELLKALLAETAIPWLRLLYLYPSRVDEGLLRLVAENPRLLPYFDLPFQ 143

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
             +D +LK+MNR +     RQ++ RIR + P+ AI S FIVGFPGE+++D +     +  
Sbjct: 144 HVADHLLKAMNRPYGEKLIRQLVGRIRQLVPEAAIRSTFIVGFPGESEEDSQRLAAFLRD 203

Query: 357 IGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER---LLCLQKKLREQQVSFNDACVGQI 413
               Q   F Y P  G+P + + +Q D+ +K  R   L+ LQ  +    +  N A +G  
Sbjct: 204 CRLEQVGIFTYYPEEGSPAAELPDQCDDQLKEGRRRQLMALQADI---SLQINRARIGTR 260

Query: 414 IEVLIEKHGKE-----KGKLVGRSPWLQSVV-LNSKNHNIGDIIKVRITDVKISTLYGEL 467
            EVL+E    E     +G+L  ++P +   V +   N   GD+++VRI +     L G +
Sbjct: 261 QEVLVEGVSAETDLLLEGRLRQQAPEVDGCVYITEGNCRPGDLVQVRIDEAHPYDLVGAI 320

Query: 468 V 468
            
Sbjct: 321 T 321


>gi|330995100|ref|ZP_08319017.1| ribosomal protein S12 methylthiotransferase RimO [Paraprevotella
           xylaniphila YIT 11841]
 gi|329576676|gb|EGG58179.1| ribosomal protein S12 methylthiotransferase RimO [Paraprevotella
           xylaniphila YIT 11841]
          Length = 443

 Score =  142 bits (357), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 121/447 (27%), Positives = 207/447 (46%), Gaps = 35/447 (7%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEKVYSFLGR 86
           V + GC  N+ DS ++     + GY+  +  D    ++ V+NTC     A E+  + +  
Sbjct: 18  VITLGCSKNLVDSEKLMRQLEANGYKVTHDADRPQGEIAVINTCGFIGDAKEESINMI-- 75

Query: 87  IRNLKNSRIKEGGDLL-VVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
              L+  + KE G L  + V GC+++   +E+    P V+   G    +   ELL  A  
Sbjct: 76  ---LEFCQAKEEGRLKKLFVMGCLSERYLKELGEEIPQVDKFYGK---FDWNELL--ADL 127

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           GK      Y  E   ER       Y       A+L I EGCD+ C++C +P   G  +SR
Sbjct: 128 GKA-----YHQELSLERELTTPSHY-------AYLKISEGCDRRCSYCAIPIITGKHVSR 175

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLR 264
            +  +++E R L+  GV E  ++ Q +  +   GLD   +    +L+  +++I G+  +R
Sbjct: 176 PIEDILEEVRMLVSRGVKEFQVIAQELTYY---GLDLYHRQVLPELIERMADIPGVEWIR 232

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
              ++P +    L +   +   +  Y+ + +Q  SD +L+ M+R  T  E   +I+R R 
Sbjct: 233 LHYAYPANFPVDLFRVMREKKNVCKYMDIALQHISDNMLQRMHRHVTRKETYDLIERFRE 292

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE-QVD 383
             P I + +  +VG PGET++DF   +D V K+ + +  +F YS   GT  +   E ++ 
Sbjct: 293 EVPGIHLRTTLMVGHPGETEEDFNELLDFVRKVKFDRMGAFSYSEEEGTYSAEHYEDEIP 352

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPWLQSVVLN 441
             VK  RL  L    +E         +G++ +V+I++   E   G+    SP +   VL 
Sbjct: 353 FEVKQARLDKLMALQQEVSADLATRKIGKVFKVIIDRSEGEYYIGRTEFDSPEVDPEVLI 412

Query: 442 SK---NHNIGDIIKVRITDVKISTLYG 465
                  + G   +V+ITD     LYG
Sbjct: 413 PACEGTLSFGAFYEVKITDADDFDLYG 439


>gi|21228284|ref|NP_634206.1| hypothetical protein MM_2182 [Methanosarcina mazei Go1]
 gi|20906744|gb|AAM31878.1| hypothetical protein MM_2182 [Methanosarcina mazei Go1]
          Length = 435

 Score =  142 bits (357), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 119/453 (26%), Positives = 221/453 (48%), Gaps = 30/453 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEKVYSF 83
           + +++S+GC  +   +  M+      G+E ++  +   A++ + N+C ++    +K+   
Sbjct: 2   KVYLESFGCSASQASAEIMKASIGKLGHELLSPENAGQAEVYICNSCTVKYTTEQKI--- 58

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           L +IR++    ++      V+V+GC+ + + E+IL  +P  +++ G     RL +LL   
Sbjct: 59  LYKIRSMGEKGVQ------VIVSGCMPEVQLEDILHANPEAHIL-GVNAVSRLGDLLSTI 111

Query: 144 RFGKRVVDTDYSVEDKFE-RLSIVDGGYN----RKRGVTAFLTIQEGCDKFCTFCVVPYT 198
              K+   T     ++ E R S   G  N    R         I +GC+  C++C+V + 
Sbjct: 112 EQRKK---TGIPGGERLEIRTSEPQGFLNVPRERSNPNIHICQISQGCNFACSYCIVKHA 168

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258
           RG  +S    +++++ R  + +G  EI L  Q+ + +   G+D       +LL ++SEI 
Sbjct: 169 RGKLLSFPPEEIIEDIRSAVADGCREIWLTSQDDSQY---GMD-TGVKLPELLRAISEIP 224

Query: 259 GLVRLRYTTSHPRD---MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
           G  ++R    +P     + D L+ A  D D +   LHLP+QS S  +LK MNR H     
Sbjct: 225 GDFKVRVGMMNPFSVLPILDDLVDAF-DSDKIFKLLHLPIQSASHSVLKKMNRLHKMDSV 283

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
            +II + R+   D+++ +D IVGF  ETD+DF  T++ V K    +    +YSPR  T  
Sbjct: 284 DEIITKFRAHFEDLSLFTDIIVGFCDETDEDFEETIEWVKKYRPEKINISRYSPRPHTKA 343

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWL 435
            +    +D  +  +R   L K   + ++   +  +G    V + K+  E G ++ R+   
Sbjct: 344 FS-FRNLDSRISVKRSHQLHKVCEQIKIESKNEMIGWKGRVFVSKY-TEIGDVLTRTDSY 401

Query: 436 QSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           + VV++  +   G+  +V+IT  K     G+LV
Sbjct: 402 RPVVISGSDLRPGEYAEVKITGAKPGYFLGKLV 434


>gi|103488208|ref|YP_617769.1| MiaB-like tRNA modifying enzyme [Sphingopyxis alaskensis RB2256]
 gi|98978285|gb|ABF54436.1| MiaB-like tRNA modifying enzyme [Sphingopyxis alaskensis RB2256]
          Length = 441

 Score =  142 bits (357), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 111/412 (26%), Positives = 186/412 (45%), Gaps = 38/412 (9%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R  V ++GC++N+ +   +     + G          D+IV+N+C + ++A  +    + 
Sbjct: 8   RVEVVNFGCRLNIAEGEAIRAAVKAAGAR--------DMIVVNSCAVTDEAVRQARQAVR 59

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAE-------GEEILRRSPIVNVVVG-------PQ 131
           R        ++E  D  VVV GC A+ E       G  ++R    V  ++G       P+
Sbjct: 60  RA-------LRERPDAEVVVTGCAAELEAGRFAAMGARVVRND--VKGLIGSYGNTVSPR 110

Query: 132 TYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCT 191
               + + LE A  G     +  + +D F  +       +      AFL +Q GC   CT
Sbjct: 111 RREPISDGLEMAPAGDGPPPSRGN-KDFFSGVRPFTPALSGADHARAFLGVQTGCSHSCT 169

Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLL 251
           FC     RG   S ++  VVD AR  +  G  EI L G ++ ++       +  T    L
Sbjct: 170 FCATVLARGAARSATVETVVDAARTALGRGQREIILTGVDLASY-----GDDSGTSLAAL 224

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
                   + RLR ++  P  + + L         +MP++HL +Q+G D +L  M RRH 
Sbjct: 225 VEALLALPVERLRLSSLDPDRIDERLFALLTGESRVMPHVHLSLQAGDDMVLTRMKRRHR 284

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
             +  ++I+R+++ R +IAI +D I GFP E +  F  ++ L+D         F YSPR 
Sbjct: 285 RADAVRLIERLKAARAEIAIGADLIAGFPTEDEAMFANSLALIDDCDVVFGHIFPYSPRA 344

Query: 372 GTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK 423
           GTP + M  QV   +  ER   L++    ++  + D  VG+   +L+E+ GK
Sbjct: 345 GTPAARM-PQVGRAIARERAAMLREANARRRRDWLDTQVGRTAAMLVERDGK 395


>gi|120610328|ref|YP_970006.1| ribosomal protein S12 methylthiotransferase [Acidovorax citrulli
           AAC00-1]
 gi|238065265|sp|A1TMP4|RIMO_ACIAC RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|120588792|gb|ABM32232.1| SSU ribosomal protein S12P methylthiotransferase [Acidovorax
           citrulli AAC00-1]
          Length = 463

 Score =  142 bits (357), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 129/486 (26%), Positives = 211/486 (43%), Gaps = 76/486 (15%)

Query: 18  VDQCIVPQRFF---VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIRE 74
           +++ I P R     + S GC   + DS  +     ++GY+   + + ADL+++NTC   +
Sbjct: 1   MNETIAPARLPRIGMVSLGCPKALTDSELILTQLSAEGYQTSKTFEGADLVIVNTCGFID 60

Query: 75  KAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGE---EILRR-SPIVNVVVGP 130
            A ++    +G         + E G   V+V GC+    GE    ++R   P V  V GP
Sbjct: 61  DAVKESLDTIGEA-------LAENGK--VIVTGCLGARAGEGGGNLVREMHPSVLAVTGP 111

Query: 131 QTYYRLPELLERARFGKRVVDTDYS----VEDKFERLSIVDGGYNRKRGVT------AFL 180
                           + V+D  +       D F  + +V GG+    GV       A+L
Sbjct: 112 HAT-------------QEVMDAVHQNLPKPHDPF--IDLVPGGFGVA-GVKLTPRHYAYL 155

Query: 181 TIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA------ 234
            I EGC+  CTFC++P  RG  +SR +  V+ EA+ L + GV E+ ++ Q+ +A      
Sbjct: 156 KISEGCNHRCTFCIIPSMRGDLVSRPVGDVLSEAKALFEGGVKELLVISQDTSAYGVDVK 215

Query: 235 -----WRGKGLDGEKCTFSDLLYSLSEIK----GLVRLRYTTSHPRDMSDCLIKAHGDLD 285
                W GK +   K    +L+ +L EI       VRL Y   +P         A G + 
Sbjct: 216 YRTGFWDGKPV---KTRMLELVQTLGEIAEPYGAWVRLHYVYPYPSVDEVIPFMATGKI- 271

Query: 286 VLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDD 345
             +PYL +P Q     +L+ M R  +     + I R R   P++ I S FI GFPGET++
Sbjct: 272 --LPYLDVPFQHSHPDVLRRMKRPASGERNLERIQRWREACPELVIRSTFIAGFPGETEE 329

Query: 346 DFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSF 405
           +F+  +D + +    +A  F YS   G   + +   +   V+ ER         E  +  
Sbjct: 330 EFQHLLDFLREAQIDRAGCFAYSDVDGAVANELPGMLPMEVREERRARFMAVAEEVSIER 389

Query: 406 NDACVGQIIEVLIEKHGKEKGKLVGR------SPWLQSVVL------NSKNHNIGDIIKV 453
               VG  ++VL++ H    G+  GR      +P +  VV        SK   +G+  + 
Sbjct: 390 LRRRVGATMQVLVD-HAPALGRKGGRGRSYADAPEIDGVVHLLPPEKISKQLKVGEFTRA 448

Query: 454 RITDVK 459
           +I  V+
Sbjct: 449 QIVGVQ 454


>gi|55379963|ref|YP_137813.1| hypothetical protein rrnAC3428 [Haloarcula marismortui ATCC 43049]
 gi|55232688|gb|AAV48107.1| unknown [Haloarcula marismortui ATCC 43049]
          Length = 427

 Score =  142 bits (357), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 117/452 (25%), Positives = 202/452 (44%), Gaps = 43/452 (9%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R+ +++YGC  N  ++ ++E      G+   +  + AD+ +LNTC + EK      + L 
Sbjct: 3   RYHIETYGCTSNRGETQQIEQALREGGHHPADGPESADVAILNTCTVLEKTER---NMLA 59

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R + L +    +     +V+ GC+A A+GEE         V+     +  +P+ +     
Sbjct: 60  RAKELDSETPAD-----LVITGCMALAQGEEFQSADIDAEVL----HWDDVPQYVLNGEC 110

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                DT+  +                  GV   L I  GC   C++C+     G   S 
Sbjct: 111 PTITPDTETVL-----------------NGVVGILPIARGCMSDCSYCITKQATGRIESP 153

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT--FSDLLYSL-SEIKGLVR 262
           S+ + V++AR L+  G  EI + GQ+   +   G D  + T    +LL  + S+I G  R
Sbjct: 154 SVEENVEKARALVHAGAKEIRITGQDTGVY---GWDTNQGTSLLPELLDRICSDIDGDFR 210

Query: 263 LRYTTSHPRDMS---DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           +R   ++P+ +    + L     + D L  ++H PVQSGSD +L  M R+H   EY +++
Sbjct: 211 VRVGMANPKGLHGVREELAAVFAEHDELYNFIHAPVQSGSDDVLADMRRQHAVSEYLEVV 270

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
           + +        +S+DFIVGFP E   D   +M L+ +    +    ++S R GT   NM 
Sbjct: 271 ETLDDQLDYWTLSTDFIVGFPTEEPADHEQSMALLRETRPEKINVTRFSKRPGTDADNM- 329

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV 439
           + +   +K +R   + +   E      +  VG    VL+ + G ++  LVG     + VV
Sbjct: 330 KGLGGQIKKDRSKEMSEAKMELMAEAYEEMVGHTSSVLLVEDGTDE-SLVGYDEAYRQVV 388

Query: 440 L---NSKNHNIGDIIKVRITDVKISTLYGELV 468
           +     +   IGD + V IT       +GE +
Sbjct: 389 IADAQERGLEIGDTVDVEITSHNTVYAFGEPI 420


>gi|222823299|ref|YP_002574872.1| radical SAM domain family (UPF0004 domain protein) [Campylobacter
           lari RM2100]
 gi|222538520|gb|ACM63621.1| conserved hypothetical protein, radical SAM domain family (UPF0004
           domain protein) [Campylobacter lari RM2100]
          Length = 438

 Score =  142 bits (357), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 102/371 (27%), Positives = 181/371 (48%), Gaps = 21/371 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + F+ S GC  N+ DS  M        YE  +    AD++++NTC   E A ++    + 
Sbjct: 3   KLFLMSLGCNKNLVDSEIMLGRL--SNYEICDEPSIADVLIVNTCGFIESAKKES---IN 57

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            I +L   R K   D L+VV GC+ Q   EE+++  P V++  G   Y ++ E++ +   
Sbjct: 58  AILDLHEQRKK---DSLLVVTGCLMQRYREELMKELPEVDLFSGVGDYEKIDEMILKKT- 113

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
              +      ++D+     I    Y+      AF+ I EGC++ C+FC +P  +G   SR
Sbjct: 114 --NLFSNSTYLQDENTNRVITGSNYH------AFVKIAEGCNQKCSFCAIPSFKGKLKSR 165

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           SL  +V+E + L++ G  + + + Q+ +++      G+K     L+ ++  IKG+   R 
Sbjct: 166 SLESIVNEVKSLVEKGYKDFSFIAQDTSSYLFD--QGQKDGLIKLIDAIESIKGIKAARI 223

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
              +P  +S  +I+      V + Y  +P+Q  SD +LK M R     +  ++++ +R  
Sbjct: 224 LYLYPTSISKEVIEKIIHSKVFVNYFDMPLQHISDNMLKIMKRGMNKTKLIELLNLMRKA 283

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P+  + + FIVG PGE+DDDF    + + +  + +   F YS    T   NM EQ+   
Sbjct: 284 -PNSFLRTGFIVGHPGESDDDFNELCEFLKEFSFDRISVFAYSKEEDTAAFNM-EQIPFK 341

Query: 386 VKAERLLCLQK 396
           +   RL  ++K
Sbjct: 342 IINSRLKKIEK 352


>gi|329765663|ref|ZP_08257235.1| MiaB-like tRNA modifying enzyme [Candidatus Nitrosoarchaeum limnia
           SFB1]
 gi|329137855|gb|EGG42119.1| MiaB-like tRNA modifying enzyme [Candidatus Nitrosoarchaeum limnia
           SFB1]
          Length = 422

 Score =  142 bits (357), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 121/449 (26%), Positives = 215/449 (47%), Gaps = 36/449 (8%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + FV++YGC  +  DS  +  +  + G+    +  ++DL ++ TC +++  A K+   + 
Sbjct: 3   KIFVEAYGCSASFADSEMISGLIVNGGHTIAKNSTESDLNIVVTCSVKDSTANKM---IH 59

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           RI++LK+  +        VVAGC+ +AE   + + S   +++ GP +  +  ++++    
Sbjct: 60  RIKSLKSKPL--------VVAGCLPKAELSTVEKISKNASLL-GPNSLGKTLQVIDSTLR 110

Query: 146 GKRVV---DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           G + V   DTD         LS V     R   V   + I  GC   C+FC     +G  
Sbjct: 111 GTKFVALEDTD---------LSKVGLPKVRLNEVVGIVEIASGCMSECSFCQTKLAKGDL 161

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            S  +  +V +    +  G  EI L   + N   G  ++ +  T   L+ ++SEI     
Sbjct: 162 QSYRIGDIVRQVETEVSEGCKEIWLTSTD-NGCYGFDINTDLPT---LVKAVSEIPEDFM 217

Query: 263 LRYTTSHPRDM---SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           +R    +P  M    + LI++    D +  +LH+PVQSGSD++L  M R HT   +++++
Sbjct: 218 IRVGMMNPMYMPRIKNELIESFSS-DKVYKFLHIPVQSGSDKVLNDMRRGHTVNTFKEVV 276

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            + R    D  IS+D IVGFP ET +DF  T +L+++         KYS R GT  +   
Sbjct: 277 KKARERFADFTISTDIIVGFPSETREDFEKTFELLNETSPDIVNLSKYSARPGTEAAEW- 335

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV 439
           EQ++ +    R   +  ++ +  +  N   +G   +VL ++  K    + GR+   +SV 
Sbjct: 336 EQIEASEVKRRSRIIFNQINKISLENNQKWIGWKGKVLFDE--KTDQGIKGRNFAYKSVF 393

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
           +  +   IG    V+ITD  I ++ GE+ 
Sbjct: 394 VKDE-IKIGQTQTVKITDASIHSIIGEIA 421


>gi|239908955|ref|YP_002955697.1| hypothetical protein DMR_43200 [Desulfovibrio magneticus RS-1]
 gi|239798822|dbj|BAH77811.1| hypothetical protein [Desulfovibrio magneticus RS-1]
          Length = 447

 Score =  142 bits (357), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 127/454 (27%), Positives = 198/454 (43%), Gaps = 43/454 (9%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSM--DDADLIVLNTCHIREKAAEKVYSF 83
           R    S GC  N  D+   E++     +    +   + ADL+V+NTC     A E+  + 
Sbjct: 21  RVHTISLGCPKNRVDT---ENVLGGLPFATTPAATPEAADLVVVNTCSFIAPAVEESVAA 77

Query: 84  L----GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL 139
           +      IR L    +       + V GC+    G+E+    P V++   P     +P  
Sbjct: 78  ILEASEAIRELSPRPV-------LAVLGCLPSRFGQELRDGLPEVDIWGLPSELDLIPGR 130

Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           L +A   +    T         RL+     Y       A+L I EGCD  C +C +P  R
Sbjct: 131 LAKALSAESAAPTG--------RLASTPPSY-------AYLKIAEGCDHACRYCTIPSIR 175

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G  +S+ L  +V+E+R L+D G  E+ ++ Q+V A+ G+ L G K     LL  L  + G
Sbjct: 176 GPLVSKPLDALVEESRGLLDKGASELVVVAQDVAAY-GRDL-GMKEGLKALLGKLLPLSG 233

Query: 260 LVRLRYTTSHPRDMSDCLIK-AHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           L  LR    +P  ++D L+    G     +PY  +P Q     +L +M R   A     +
Sbjct: 234 LKWLRLLYLYPSGVTDDLLAFLAGAGRPFVPYFDIPFQHVQPDMLAAMGRPKAA-SAETV 292

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           + R+R    D A+ S FIVG PGE  + F   +  V++        F Y    GTP + M
Sbjct: 293 VARVRRHFSDAALRSTFIVGLPGEKKEHFETLLRFVNEARLNHVGVFPYHREEGTPAAAM 352

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQS 437
             QV  +VKA R+  +    RE      +  VG+  EVL++  H +  G  VGR+ W Q+
Sbjct: 353 AGQVRSDVKARRVEAVMAAQREISADLLEDWVGRDTEVLVDSVHPEWPGLHVGRT-WFQA 411

Query: 438 VVLNSKNH------NIGDIIKVRITDVKISTLYG 465
             ++   +        G+++   I D K   L G
Sbjct: 412 PEIDGVTYVSGPGVAPGNMVTATIEDSKDYDLVG 445


>gi|222424602|dbj|BAH20256.1| AT4G36390 [Arabidopsis thaliana]
          Length = 310

 Score =  142 bits (357), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 99/288 (34%), Positives = 143/288 (49%), Gaps = 39/288 (13%)

Query: 221 GVCEITLLGQNVNAWRGKGLDGE-------------KCT-------FSDLLYSLSEIKGL 260
           GV E+TLLGQNVN++     D E             +C        F+DLL  LS     
Sbjct: 1   GVKEVTLLGQNVNSYNDDSADRESGANWEYSEGFSSRCKVKNMGLRFADLLDRLSVEFPE 60

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
           +R R+T+ HP+D  D L+    D   +   +HLP QSG+ RIL+ M R +T   Y  ++ 
Sbjct: 61  MRFRFTSPHPKDYPDELLYLMRDRHNICNLIHLPAQSGNSRILEQMRRGYTREAYLDLVK 120

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NML 379
           +IRS+ PD+AI+SDFI GF GET+++ + T+ LV  +GY  A+ F YS R  T    N  
Sbjct: 121 KIRSIIPDVAITSDFITGFCGETEEEHQETLSLVRAVGYDMAYMFAYSMREKTHAHRNYT 180

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE--KGKLVGRSPWLQS 437
           + V E VK  RL  L    RE      D+ VG    VL+E   K   + +L+G++     
Sbjct: 181 DDVPEEVKQRRLTELIDAFRETTGPCYDSQVGSTQLVLVEGPNKRAPETELIGKTDKGHR 240

Query: 438 VVLNSK----------------NHNIGDIIKVRITDVKISTLYGELVV 469
           V   +K                N  IGD ++V+I     ++L+GE + 
Sbjct: 241 VSFVTKPLFDKACLLDGDDLKRNPGIGDFVEVQIEKSTRASLFGEALA 288


>gi|157415679|ref|YP_001482935.1| MiaB-like tRNA modifying protein [Campylobacter jejuni subsp.
           jejuni 81116]
 gi|238065317|sp|A8FNC1|RIMO_CAMJ8 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|157386643|gb|ABV52958.1| hypothetical protein C8J_1360 [Campylobacter jejuni subsp. jejuni
           81116]
          Length = 439

 Score =  142 bits (357), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 103/371 (27%), Positives = 184/371 (49%), Gaps = 21/371 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + ++ S GC  N+ DS  M        YE  +    AD++++NTC   + A ++    + 
Sbjct: 3   KLYLMSLGCNKNLVDSEIMLGRL--SAYELCDEPSKADVLIVNTCGFIDSAKKES---IN 57

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            I +L   R K   D L+VV GC+ Q   EE+++  P V++  G   Y R+ E++ +   
Sbjct: 58  AILDLHEQRKK---DSLLVVTGCLMQRYREELMKELPEVDLFTGVGDYERIDEMILKKT- 113

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                ++ Y   +  +R  I+ G  +      AF+ I EGC++ C+FC +P  +G   SR
Sbjct: 114 -NLFSNSTYLQSENSKR--IITGSNSH-----AFIKIAEGCNQKCSFCAIPSFKGKLKSR 165

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            +S ++ E + L+  G  + + + Q+ +++      GEK     L+  + +IKG+   R 
Sbjct: 166 EISSIIAELKDLVARGYKDFSFIAQDTSSYLFD--KGEKDGLIRLIDEVEKIKGIRAARI 223

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
              +P   S+ LIK     ++ + Y  +P+Q  SD +LK M R   +   +++++ ++S 
Sbjct: 224 LYLYPTSASEALIKRIIASEIFINYFDMPLQHISDNMLKIMKRGANSTRLKEMLNLMKSA 283

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P+  + + FIVG PGE++ DF    + V   G+ +   F YS    T   +M EQV   
Sbjct: 284 -PNSFLRTGFIVGHPGESEADFEELCEFVKDFGFDRISVFAYSKEEDTAAFDM-EQVPFK 341

Query: 386 VKAERLLCLQK 396
           V  +RL  ++K
Sbjct: 342 VINKRLKIIEK 352


>gi|324507132|gb|ADY43031.1| CDKAL1-like protein [Ascaris suum]
          Length = 535

 Score =  141 bits (356), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 114/423 (26%), Positives = 206/423 (48%), Gaps = 34/423 (8%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +  FV+++GC  N  DS  M  +    GY  +++ ++A L VLN+C ++  + ++     
Sbjct: 48  ETIFVRTWGCSHNTSDSEYMTGLLSMAGYNIISTKENASLWVLNSCTVKTPSEDQ----- 102

Query: 85  GRIRNLKNSRIKEGGDL-LVVVAGCVAQAE-GEEILRRSPIVNVVVGPQTYYRLPELLER 142
                L+N   K       +VVAGCV+QA+   E LR   +V V    +   R+ E++E 
Sbjct: 103 -----LENEVKKAKEAKKFIVVAGCVSQADPNAEFLRGVSLVGV----KQIDRIVEVVEE 153

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
              G  V     S +   ++LS+      R+  +   L +  GC   CT+C     RG  
Sbjct: 154 TLKGNCV--RLLSRKRPEQKLSLPK---MRRNNLIEVLAVSSGCLNNCTYCKTKQARGDL 208

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-RGKGLDGEKCTFSDLLYSLSEI--KG 259
           +S    ++V++A +    G  EI L  +++ AW R  G+        DLL ++ ++  +G
Sbjct: 209 VSYPPEELVEQAVRAFSEGCREIWLTSEDLGAWGRDFGM-----VLPDLLKAMVDVIPEG 263

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDV--LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
            + +R   ++P  + D L +    L+   +  +LH+PVQSGSD +L+ MNR +++ ++ +
Sbjct: 264 CM-MRLGMTNPPYILDFLDEIAEILNHPRVYSFLHIPVQSGSDAVLRDMNREYSSADFCR 322

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
           ++D +    P++ I++DFI  FP ET +DF  +M LV +  +   F  ++ PR GTP + 
Sbjct: 323 VVDFMLQNVPNVYIATDFICAFPTETIEDFEESMQLVHRYRFPSVFINQFYPRKGTPAAR 382

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQS 437
            L+++       R   +    R      ND  +G   +VL+ +   +K   V  +   + 
Sbjct: 383 -LKKITTTEARRRTAAMSSLFRSYTRYGNDR-LGMEYDVLVCEWATDKVHFVAHNKCYEH 440

Query: 438 VVL 440
            +L
Sbjct: 441 FLL 443


>gi|288802186|ref|ZP_06407626.1| 2-methylthioadenine synthetase [Prevotella melaninogenica D18]
 gi|288335153|gb|EFC73588.1| 2-methylthioadenine synthetase [Prevotella melaninogenica D18]
          Length = 433

 Score =  141 bits (356), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 127/452 (28%), Positives = 208/452 (46%), Gaps = 43/452 (9%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEK-VYSFLGRI 87
           + GC  N+ DS  +   F   G+   +       ++ V+NTC   E A E+ + + L  I
Sbjct: 10  TMGCSKNLVDSELIMKQFEENGFHCTHDSKRPQGEIAVINTCGFIEAAKEESINTILEFI 69

Query: 88  RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147
              KN ++ +     + V GC++Q   +E+    P V+   G   Y +L   L +A    
Sbjct: 70  NRKKNGQLNK-----LYVMGCLSQRYKDELEAELPEVDKFYGKFNYKQLLTDLGKA---- 120

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
                D    +    L+             A++ I EGCD+ C +C +P   G   SRS+
Sbjct: 121 -----DVPACNGVRHLTTPRH--------YAYVKIAEGCDRHCAYCAIPLITGRHHSRSV 167

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
            +++DE R L+  GV E  ++ Q +  + G  LDG K   ++L+  +++I+G+  +R   
Sbjct: 168 EEILDEVRGLVAQGVKEFQIIEQELTYY-GVDLDG-KHHITELISRMADIEGVEWIRLHY 225

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
           ++P      L+    +   +  YL +  Q  SD +L  M R  +  E   +I  IR   P
Sbjct: 226 AYPNQFPLDLLDVIAEKPNVCKYLDIAFQHISDHMLNRMRRHVSKQETLDLIAEIRRRVP 285

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML-EQVDENV 386
            I + +  +VGFPGE+D+DF    + V    + +  +F YS   GT  +N   + V E+V
Sbjct: 286 GIHLRTTLLVGFPGESDEDFEELKEFVTNARFERMGAFSYSEEEGTYSANHYKDDVPEDV 345

Query: 387 KAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVV 439
           K  R   L+ +Q+ + E+        VG+  +V+I++  KE    VGR    SP +   V
Sbjct: 346 KQARLDELMAIQQGISEE---LEAEKVGKTFKVIIDR--KEGEYYVGRTEFCSPEVDPEV 400

Query: 440 LNS---KNHNIGDIIKVRITDVKISTLYGELV 468
           L S   K   IG    V ITD     L+GE+V
Sbjct: 401 LISSAEKPLRIGKFYDVCITDSDEFDLFGEVV 432


>gi|167533429|ref|XP_001748394.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163773206|gb|EDQ86849.1| predicted protein [Monosiga brevicollis MX1]
          Length = 466

 Score =  141 bits (356), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 111/440 (25%), Positives = 204/440 (46%), Gaps = 46/440 (10%)

Query: 28  FVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRI 87
           F++++GC  N  D   M  +  + GY   +  + ADL +LN+C ++  + +   +F   I
Sbjct: 53  FLRTWGCSHNNSDGEYMAGLLSAAGYTISDKREGADLWILNSCTVKTPSED---TFNNEI 109

Query: 88  RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYY--RLPELLERARF 145
           R+ ++  I       VV+AGCV                    PQT    R+ E++E    
Sbjct: 110 RDARSRNIP------VVLAGCV--------------------PQTMQIDRVVEVVEETLQ 143

Query: 146 GKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
           G+ V +     V+ +    + +D    R+  +   + I  GC   CT+C   + RG   S
Sbjct: 144 GRTVRLLGSKKVDGRKTGGTALDLPKIRRNPLIEIIPINTGCLNKCTYCKTKHARGDLGS 203

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL- 263
            ++ ++V   +++I  GV EI L  ++  A+ G+ ++         + ++     +VRL 
Sbjct: 204 YTIQEIVQRVQQVIAEGVVEIWLTSEDTGAY-GRDINTSIPELLRAILAVVPAGVMVRLG 262

Query: 264 ----RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
                Y   H + +++CL         +  ++H+P+QSG++ IL +M R +T  ++  + 
Sbjct: 263 MTNPPYIVEHVQAIAECLRHPR-----MYKFIHIPIQSGANPILHAMQREYTREDFCFVA 317

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
           D +    P + I++D I GFPGETD DF  T ++V +  +   F+ ++ PR GTP + M 
Sbjct: 318 DTLLEQVPALTIATDIICGFPGETDADFEDTFEIVRRYHFPSLFTNQFFPRPGTPAAAM- 376

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV 439
           E+VD  +  +R   L    R  +V   D  +     VL+     +    V  +     V+
Sbjct: 377 ERVDPRLVKQRTKELSDYFRGYRVY--DDQLDSYQRVLVTDTATDNVHFVAHNRSFDQVL 434

Query: 440 LNSKNHNIGDIIKVRITDVK 459
           + +    +G +I V+IT+V 
Sbjct: 435 VPANPDFMGKLIVVKITNVN 454


>gi|283955058|ref|ZP_06372561.1| LOW QUALITY PROTEIN: MiaB-like tRNA modifying enzyme YliG
           [Campylobacter jejuni subsp. jejuni 414]
 gi|283793425|gb|EFC32191.1| LOW QUALITY PROTEIN: MiaB-like tRNA modifying enzyme YliG
           [Campylobacter jejuni subsp. jejuni 414]
          Length = 416

 Score =  141 bits (356), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 104/375 (27%), Positives = 186/375 (49%), Gaps = 21/375 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + ++ S GC  N+ DS  M        YE  +    AD++++NTC   + A ++    + 
Sbjct: 3   KLYLVSLGCNKNLVDSEIMLGRL--SAYELCDEPSKADVLIVNTCGFIDSAKKES---IN 57

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            I +L   R K   D L+VV GC+ Q   EE+++  P V++  G   Y R+ E++ +   
Sbjct: 58  AILDLHEQRKK---DSLLVVTGCLMQRYREELMKELPEVDLFTGVGDYERIDEMILKKT- 113

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                ++ Y   +  +R  I+ G  +      AF+ I EGC++ C+FC +P  +G   SR
Sbjct: 114 -NLFSNSTYLQSENSKR--IITGSNSH-----AFIKIAEGCNQKCSFCAIPSFKGKLKSR 165

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            +S ++ E + L+  G  + + + Q+ +++      GEK     L+  + +I+G+   R 
Sbjct: 166 EISSIIAELKDLVARGYKDFSFIAQDTSSYLFD--KGEKDGLIRLIDEVEKIQGIRAARI 223

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
              +P   S+ LIK     ++ + Y  +P+Q  SD +LK M R   +   ++I++ ++S 
Sbjct: 224 LYLYPTSASEALIKRIIASEIFVNYFDMPLQHISDNMLKIMKRGANSTRLKEILNLMKSA 283

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P+  + + FIVG PGE++ DF    + V   G+ +   F YS    T   +M EQV   
Sbjct: 284 -PNSFLRTGFIVGHPGESEADFEELCEFVKDFGFDRVSVFAYSKEEDTAAFDM-EQVPFK 341

Query: 386 VKAERLLCLQKKLRE 400
           V  +RL  ++K + E
Sbjct: 342 VINKRLKIIEKIVDE 356


>gi|262381912|ref|ZP_06075050.1| MiaB-like tRNA modifying enzyme YliG [Bacteroides sp. 2_1_33B]
 gi|262297089|gb|EEY85019.1| MiaB-like tRNA modifying enzyme YliG [Bacteroides sp. 2_1_33B]
          Length = 432

 Score =  141 bits (355), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 121/449 (26%), Positives = 216/449 (48%), Gaps = 38/449 (8%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGY--ERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           + GC  N+ DS ++   F + GY  E      + +++V+NTC     A E+  + +  + 
Sbjct: 10  TLGCSKNLVDSEQLMRQFVANGYTVEHDPHKINGEIVVVNTCGFIGDAQEESINMILELG 69

Query: 89  NLKNS-RIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147
             K   RI   G L V+  GC+++   +++ +  P V+   G    +   EL+  +  GK
Sbjct: 70  EQKQKGRI---GKLFVM--GCLSERFLKDLEKELPEVDRFYGK---FNWKELI--SDLGK 119

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
                 Y  E   ER+      Y       A++ I EGC++ C++C +P   G   SR +
Sbjct: 120 -----SYHQELATERVLTTPRHY-------AYVKIGEGCNRTCSYCSIPIITGAYQSRPM 167

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK-CTFSDLLYSLSEIKGLVRLRYT 266
            ++VDE R L+  GV E  ++ Q++  +   GLD  K     +L+  +S+I G+  +R  
Sbjct: 168 DEIVDEVRGLVAQGVKEFQMIAQDLTFY---GLDRYKRMALPELVERVSDIPGVEWIRLH 224

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
             +P      L+    + D +  Y+ + +Q  SD +LK M R  T  E  ++++R+R   
Sbjct: 225 YGYPSHFPYDLLPVMRERDNVCKYMDIALQHISDPMLKMMRRNITKAETNELLERMRREV 284

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG-SNMLEQVDEN 385
           P I + +  +VG PGET+ DF   +  V  I + +  +F YS   GT    +  +++ + 
Sbjct: 285 PGIHLRTTLMVGHPGETEHDFEELIRFVKDIRFERMGAFAYSHEEGTYAYQHYKDEIPQE 344

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVVLN 441
           VK +RL  L +         N + VGQ   V++++  +E+   VGR    SP +   +L 
Sbjct: 345 VKQDRLDYLMRVQEGISADVNASKVGQTFRVIVDR--EEEDFYVGRTQYDSPEVDPEILI 402

Query: 442 SKNHNI--GDIIKVRITDVKISTLYGELV 468
           SK+  +  G   +V++ D +   LYG+++
Sbjct: 403 SKDTPLSPGSFYQVKVIDAQAFDLYGKVL 431


>gi|296274392|ref|YP_003657023.1| MiaB-like tRNA modifying protein YliG [Arcobacter nitrofigilis DSM
           7299]
 gi|296098566|gb|ADG94516.1| MiaB-like tRNA modifying enzyme YliG [Arcobacter nitrofigilis DSM
           7299]
          Length = 446

 Score =  141 bits (355), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 112/443 (25%), Positives = 214/443 (48%), Gaps = 29/443 (6%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ DS  M      + Y   N+ + +D+I++NTC   + A E+    +  I NL
Sbjct: 16  SLGCTKNLVDSEIMLGKL--KDYAISNNAETSDVIIVNTCGFIDSAKEES---INTILNL 70

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
              R K   D ++V+AGC+++   EE+ +  P +++  G   Y ++  L+   R G    
Sbjct: 71  HEQRKK---DSVLVMAGCLSERYKEELQKELPEIDIFTGVGDYDKIDTLVNEKRSG--FT 125

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
           +  + + +  +R+ I    Y+      A++ + EGC++ C+FC +P  +G   SR+L  +
Sbjct: 126 NEVFLLNETNDRV-ITGSNYH------AYIKLSEGCNQVCSFCAIPSFKGKLHSRTLESL 178

Query: 211 VDEARKLIDNGVCEITLLGQNVNAW-RGKGL-DGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
           V E + L+  G  + + + Q+ +++ R   + DG       L+  + +I+G+   R    
Sbjct: 179 VKEVKNLVAQGFYDFSFVSQDSSSFLRDLNINDG----LERLVNEVEKIEGIKSARILYL 234

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
           +P   +  LIK      V   Y  +P+Q  S ++LK M R     + ++++  +R+  P+
Sbjct: 235 YPSTTTLSLIKKIEQSKVFENYFDMPLQHISSKVLKIMKRGKGVEKLKELMSAMRNT-PN 293

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
             + + FI G PGET +DF      V++ G+ +A  F YS   GT    +  +VD+    
Sbjct: 294 SFVRTTFIAGHPGETQEDFEELCSYVEEYGFDRANVFSYSDEDGTTAYELDGKVDQETID 353

Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR-----SPWLQSVVLNSK 443
           +R   L + ++ + +   +  +GQI++V I+   +E   L+       +P +   +  + 
Sbjct: 354 KRAEILGEIIQRKTLESLEKEIGQIVDVYIDGESEEHEYLLSARKTIWAPEIDGEIYIND 413

Query: 444 NHNIGDIIKVRITDVKISTLYGE 466
           N    ++   +   VKIS L G+
Sbjct: 414 NETGKELTVGKSYQVKISELAGD 436


>gi|189461331|ref|ZP_03010116.1| hypothetical protein BACCOP_01981 [Bacteroides coprocola DSM 17136]
 gi|189431860|gb|EDV00845.1| hypothetical protein BACCOP_01981 [Bacteroides coprocola DSM 17136]
          Length = 432

 Score =  141 bits (355), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 121/450 (26%), Positives = 212/450 (47%), Gaps = 39/450 (8%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDD--ADLIVLNTCHIREKAAEKVYSFLGRIR 88
           + GC  N+ DS ++     + GY+  +  ++   ++ V+NTC     A E+  + +    
Sbjct: 10  TLGCSKNLVDSEKLMKQLEANGYKVTHDSENPQGEIAVINTCGFIGDAKEESINMI---- 65

Query: 89  NLKNSRIKEGGDLL-VVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147
            L+  + KE G L  + V GC+++   +E+    P V+   G    +   ELL  A  GK
Sbjct: 66  -LEFCQAKEEGRLKKLYVMGCLSERYLKELQVEIPQVDKFYGK---FNWNELL--ADLGK 119

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
               +D+++E    R       Y       A+L I EGCD+ C++C +P   G  +SR +
Sbjct: 120 -TYHSDFAIE----RHLTTPKHY-------AYLKISEGCDRKCSYCAIPIITGKHVSRPM 167

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYT 266
            +++DE R L+  GV E  ++ Q +  +   G+D  +K    +L+  ++EI G+  +R  
Sbjct: 168 EEILDEVRLLVSEGVKEFQVIAQELTYY---GVDLYKKQMLPELIERMAEIPGVKWIRLH 224

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
            ++P      L +   + D +  Y+ + +Q  SD +L  M R  T  E  Q+I+  R   
Sbjct: 225 YAYPAHFPKELFRVMREHDNVCKYMDIALQHISDNMLSKMRRHVTKEETYQLIEEFRKEV 284

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT-PGSNMLEQVDEN 385
           P I + +  +VG PGETD DF    + V K  + +  +F YS   GT    +  + + ++
Sbjct: 285 PGIHLRTTLMVGHPGETDQDFEELKEFVRKARFDRMGAFAYSEEEGTYSAKHYKDDIPQD 344

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVVL- 440
           VK +RL  L +  +E     +   +G+  +V+I++  KE    +GR    SP +   VL 
Sbjct: 345 VKQKRLDELMEIQQEISNELSHNKIGKEFKVIIDR--KEGDYYIGRTEFDSPEVDPEVLI 402

Query: 441 --NSKNHNIGDIIKVRITDVKISTLYGELV 468
               +    G   +V++ D     LY  LV
Sbjct: 403 KDEGRMLRTGSFHQVKVYDADDFDLYATLV 432


>gi|222628903|gb|EEE61035.1| hypothetical protein OsJ_14875 [Oryza sativa Japonica Group]
          Length = 613

 Score =  141 bits (355), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 117/441 (26%), Positives = 202/441 (45%), Gaps = 44/441 (9%)

Query: 40  DSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGG 99
           DS  M     + GY      + ADL ++NTC ++  +   + + + + ++          
Sbjct: 60  DSEYMSGQLSAFGYAITEEPEGADLWLINTCTVKNPSQSAMTTLISKCKSANKP------ 113

Query: 100 DLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDK 159
              +VVAGCV Q  G   L+    ++V+ G Q   R+ E++E    G  V          
Sbjct: 114 ---LVVAGCVPQ--GSRDLKELEGISVI-GVQQIDRVVEVVEETLKGHEVRLLSR----- 162

Query: 160 FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLID 219
            + L  +D    RK      L I  GC   CT+C   + RG   S ++  +VD  + ++ 
Sbjct: 163 -KTLPSLDLPKVRKNKFIEILPINVGCLGACTYCKTKHARGHLGSYTIESLVDRVKIVVS 221

Query: 220 NGVCEITLLGQNVNAW-RGKG------LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
            GV EI L  ++  A+ R  G      L+G          ++  I G+    +   H ++
Sbjct: 222 EGVREIWLSSEDTGAYGRDIGTNLPNLLNGIAAELPADRSTMLRI-GMTNPPFILEHLKE 280

Query: 273 MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAIS 332
           ++  L         +  +LH+PVQSGSD +L +MNR +T  E+R+++D +  + P + I+
Sbjct: 281 IASVLCHP-----CVYSFLHVPVQSGSDAVLTAMNREYTVSEFRRVVDTLCELVPGMQIA 335

Query: 333 SDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLL 392
           +D I GFPGETD+DF  T++LV +  + Q    ++ PR GTP + M +     VK     
Sbjct: 336 TDIICGFPGETDEDFSQTVNLVKQYLFPQVHISQFYPRPGTPAARMKKVPSVEVK----- 390

Query: 393 CLQKKLREQQVSFND-----ACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNI 447
              K+ RE    F          G++  + I +   +   LVG +     V++ + +  +
Sbjct: 391 ---KRSRELTSVFESFSPYQGMEGKVERIWITEIATDGVHLVGHTKGYIQVLVIAPDSML 447

Query: 448 GDIIKVRITDVKISTLYGELV 468
           G    V+IT V   +++GE++
Sbjct: 448 GTSADVKITSVGRWSVFGEVI 468


>gi|317010566|gb|ADU84313.1| hypothetical protein HPSA_01445 [Helicobacter pylori SouthAfrica7]
          Length = 418

 Score =  141 bits (355), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 106/385 (27%), Positives = 190/385 (49%), Gaps = 34/385 (8%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF--FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           ++ + K++GC+ N++D+  M +    FS   E     ++AD+I++N+C +   A   V S
Sbjct: 2   KKVYFKTFGCRTNLFDTQVMGENLKDFSATLEE----NEADIIIINSCTVTNGADSAVRS 57

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-E 141
           +  ++  L            V+  GC  + +G+E+  +   +  V G     ++  LL E
Sbjct: 58  YAKKMARLNKE---------VLFTGCGVKTQGKELFEKG-FLKGVFGHDNKEKINALLQE 107

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           + RF       D ++E+K    ++V     + R   AF+ IQEGCD  C +C++P  RG 
Sbjct: 108 KKRFF-----IDDNLENKHLDTTMVSEFVGKTR---AFIKIQEGCDFDCNYCIIPSVRGR 159

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-RGKGLDGEKCTFSDLLYSLSEIKGL 260
             S    +++++   L + GV E+ L G NV ++ + KG        + L+  LS+I GL
Sbjct: 160 ARSFEERKILEQVSLLCNKGVQEVVLTGTNVGSYGKDKG-----SNIARLIKKLSQIAGL 214

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R  +  P  + +       + D L  +LH+ +Q   D +L+ MNRR+     R++++
Sbjct: 215 KRIRIGSLEPNQI-NDEFLELLEEDFLEKHLHIALQHSHDFMLERMNRRNRIKSDRELLE 273

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           +I S   + AI +DFIVG PGE++  F    + ++ +       F YS R  TP S M +
Sbjct: 274 KIAS--KNFAIGTDFIVGHPGESESVFEKAFENLEGLPLTHIHPFIYSKRKDTPSSLMHD 331

Query: 381 QVDENVKAERLLCLQKKLREQQVSF 405
            V   V  +RL  ++  +  +  +F
Sbjct: 332 SVSLEVSKKRLNAIKDLIFHKNKAF 356


>gi|303325954|ref|ZP_07356397.1| MiaB tRNA modifying enzyme-like protein [Desulfovibrio sp.
           3_1_syn3]
 gi|302863870|gb|EFL86801.1| MiaB tRNA modifying enzyme-like protein [Desulfovibrio sp.
           3_1_syn3]
          Length = 442

 Score =  141 bits (355), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 130/429 (30%), Positives = 199/429 (46%), Gaps = 38/429 (8%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGY--ERVNSMDDADLIVLNTC-HIREKAAEKVYSFLGRI 87
           S GC  N  DS   E +  S G   + V  M  A L+ +NTC  I     E V + L  +
Sbjct: 16  SLGCPKNRVDS---ERLLGSLGLPVKSVAQMGRARLVFINTCGFIAPAVRESVRAVLDAV 72

Query: 88  RNLKNSRIKEGGDLLVVVAGC-VAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
             L   + K     L+ VAGC V +   EE+ R  P V++ +        P +L RA   
Sbjct: 73  NRLARCKNKP----LLAVAGCMVGRYGAEELARELPEVDLWLPTGDLADWPAMLARALGL 128

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVT-AFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            R+ +   S            GG     G + A+L I EGC   C FC +P  RG   S 
Sbjct: 129 PRLPEGPGS------------GGRLLSTGPSYAWLKIGEGCRHNCAFCTIPSIRGGLRSE 176

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            +S ++ EAR L++ GV E+ L+ Q+V AW G    GEK +   LL  L  + GL  LR 
Sbjct: 177 PVSDLLAEARGLLEQGVRELVLVAQDVTAWGGD--LGEKKSLLHLLEGLLGLDGLAWLRL 234

Query: 266 TTSHPRDMSDCLIK-AHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
              +P  ++  L++        L+PYL +P+Q     +L  M R   A + R+++DR+R 
Sbjct: 235 LYLYPSGVTPELLRFMRESGGPLLPYLDIPLQHAHPEVLARMGRPF-AGDPRRVLDRVRD 293

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             P+ A+ + FIVG+PGE++  F +    V++  +     F Y    GT  + + +QV E
Sbjct: 294 ALPEAAVRTTFIVGYPGESEAHFDSLCRFVEESRFQNMGVFAYQAEEGTKAAGLPDQVPE 353

Query: 385 NVKAERLLCLQKKLREQQVSFNDAC----VGQIIEVLIE-KHGKEKGKLVGRSPWLQSVV 439
            ++  R    +  L E Q   +++     VGQ + VL++  H +  G   GR  W QS  
Sbjct: 354 EIRERR----RATLMEIQAGISESLLAERVGQRLPVLVDAPHPEWPGLHSGRV-WFQSPE 408

Query: 440 LNSKNHNIG 448
           ++   +  G
Sbjct: 409 VDGMTYVSG 417


>gi|255013882|ref|ZP_05286008.1| putative Fe-S oxidoreductase [Bacteroides sp. 2_1_7]
 gi|256839776|ref|ZP_05545285.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Parabacteroides sp. D13]
 gi|298375535|ref|ZP_06985492.1| 2-methylthioadenine synthetase [Bacteroides sp. 3_1_19]
 gi|301310445|ref|ZP_07216384.1| 2-methylthioadenine synthetase [Bacteroides sp. 20_3]
 gi|256738706|gb|EEU52031.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Parabacteroides sp. D13]
 gi|298268035|gb|EFI09691.1| 2-methylthioadenine synthetase [Bacteroides sp. 3_1_19]
 gi|300832019|gb|EFK62650.1| 2-methylthioadenine synthetase [Bacteroides sp. 20_3]
          Length = 432

 Score =  141 bits (355), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 121/449 (26%), Positives = 216/449 (48%), Gaps = 38/449 (8%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGY--ERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           + GC  N+ DS ++   F + GY  E      + +++V+NTC     A E+  + +  + 
Sbjct: 10  TLGCSKNLVDSEQLMRQFVANGYTVEHDPHKINGEIVVVNTCGFIGDAQEESINMILELG 69

Query: 89  NLKNS-RIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147
             K   RI   G L V+  GC+++   +++ +  P V+   G    +   EL+  +  GK
Sbjct: 70  EQKQKGRI---GKLFVM--GCLSERFLKDLEKELPEVDRFYGK---FNWKELI--SDLGK 119

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
                 Y  E   ER+      Y       A++ I EGC++ C++C +P   G   SR +
Sbjct: 120 -----SYHQELATERVLTTPRHY-------AYVKIGEGCNRTCSYCSIPIITGAYQSRPM 167

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK-CTFSDLLYSLSEIKGLVRLRYT 266
            ++VDE R L+  GV E  ++ Q++  +   GLD  K     +L+  +S+I G+  +R  
Sbjct: 168 DEIVDEVRGLVAQGVKEFQMIAQDLTFY---GLDRYKRMALPELVERVSDIPGVEWIRLH 224

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
             +P      L+    + D +  Y+ + +Q  SD +LK M R  T  E  ++++R+R   
Sbjct: 225 YGYPSHFPYDLLPVMRERDNVCKYMDIALQHISDPMLKMMRRNITKAETYELLERMRREV 284

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG-SNMLEQVDEN 385
           P I + +  +VG PGET+ DF   +  V  I + +  +F YS   GT    +  +++ + 
Sbjct: 285 PGIHLRTTLMVGHPGETEQDFEELIRFVKDIRFERMGAFAYSHEEGTYAYQHYKDEIPQE 344

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVVLN 441
           VK +RL  L +         N + VGQ   V++++  +E+   VGR    SP +   +L 
Sbjct: 345 VKQDRLDYLMRVQEGISADVNASKVGQTFRVIVDR--EEEDFYVGRTQYDSPEVDPEILI 402

Query: 442 SKNHNI--GDIIKVRITDVKISTLYGELV 468
           SK+  +  G   +V++ D +   LYG+++
Sbjct: 403 SKDTPLSPGSFYQVKVIDAQAFDLYGKVL 431


>gi|114771178|ref|ZP_01448598.1| RNA modification enzyme, MiaB-family protein [alpha proteobacterium
           HTCC2255]
 gi|114548103|gb|EAU50990.1| RNA modification enzyme, MiaB-family protein [alpha proteobacterium
           HTCC2255]
          Length = 460

 Score =  141 bits (355), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 116/451 (25%), Positives = 203/451 (45%), Gaps = 37/451 (8%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC   + DS R+     ++GY       +AD +++NTC   + A  +    +G   + 
Sbjct: 33  SLGCPKALVDSERILTRLRAEGYAISPEYTNADAVIVNTCGFLDSAKLESLEAIGEALS- 91

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
           +N R        V+V GC+   E + I +  P V  V GP  Y ++ + + +A       
Sbjct: 92  ENGR--------VIVTGCLG-VEEDYIRKNHPSVLAVTGPHQYEQVLDAVHKAVPPS--- 139

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
                  D F  L    G     R  + +L I EGC+  C FC++P  RG  +SR    +
Sbjct: 140 ------PDPFIDLLPASGVSLTPRHYS-YLKISEGCNHKCKFCIIPDMRGKLMSRPAHAI 192

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLD-------GEKCTFSDLLYSLSEIKGLVRL 263
           + EA KL+D+GV E+ ++ Q+ +A+   GLD         +   +DL   L  +   +RL
Sbjct: 193 IREAEKLVDSGVKELLVISQDTSAY---GLDIKHNTAHDHRAHITDLTRDLGTLGAWIRL 249

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
            Y   +P   +   + A    ++L PYL +P Q     +LK M R   +      I   R
Sbjct: 250 HYVYPYPHVRNLIPLMADPSNNIL-PYLDIPFQHSHPDVLKRMARPAKSSNTLSEIAAWR 308

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              PDI + S FIVG+PGET+ +F   +D +D+    +   F+Y    G   + +   ++
Sbjct: 309 DNCPDITLRSTFIVGYPGETETEFEHLLDWLDEAQLDRVGCFQYENVDGARSNVLKNHIE 368

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVL---IEKHGKEKGKLVGRSPWLQSVVL 440
            +VK +R     +K +    +     VG  ++V+   I++ G    +    +P +   + 
Sbjct: 369 PDVKQDRWERFMEKSQAISETKLAKKVGLNLDVIVDNIDEDGVATCRTKADAPEIDGNLF 428

Query: 441 ---NSKNHNIGDIIKVRITDVKISTLYGELV 468
              N+    +G II+V++ +     L+G+++
Sbjct: 429 IDENTDKIKVGQIIQVKVDEASEYDLWGQII 459


>gi|332884205|gb|EGK04473.1| ribosomal protein S12 methylthiotransferase rimO [Dysgonomonas
           mossii DSM 22836]
          Length = 431

 Score =  141 bits (355), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 116/454 (25%), Positives = 208/454 (45%), Gaps = 36/454 (7%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEKVYS 82
            R  V + GC  N+ DS  +     + GY   +  D  + ++ V+NTC     A E+  +
Sbjct: 4   NRIDVITLGCSKNLVDSELLMKQLLANGYTVKHDPDKPEGEIAVINTCGFIGDAKEESIN 63

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +      K +R        + V GC+ +   +E+    P V+   G   +  L   L +
Sbjct: 64  MILEFAEAKKARKLSK----LFVMGCLTERYMDELKAEIPEVDNFYGKFNWKMLISDLGK 119

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           + F + +           ER       Y       A+L I EGC++ C++C +P   G  
Sbjct: 120 S-FKQDIA---------LERSITTPKHY-------AYLKISEGCNRTCSYCSIPIMTGKH 162

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK-CTFSDLLYSLSEIKGLV 261
            SR + ++ +E R L+  GV E  ++ Q+++ +   G D  K     +L+  +++I+G+ 
Sbjct: 163 QSRPIEEIEEEVRNLVAVGVKEFQVIAQDLSFY---GYDNYKQAKLPELIERIAKIEGVK 219

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
            +R   ++P +    L++   + D +  YL + +Q  SD +L  M R  +      ++ R
Sbjct: 220 WIRLHYAYPANFPYDLLRVMRENDNVCKYLDIALQHVSDNMLTKMRRNISKQATYDLMKR 279

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG-SNMLE 380
           IR   P I + +  +VG PGET  DF   +  V+ + + +  +F YS   GT    N  +
Sbjct: 280 IREEVPGIHLRTTLMVGHPGETKKDFEELLQFVNDMRFERMGAFPYSHEDGTYAYDNYKD 339

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQ 436
            + +  K ER+  L     +     N+  +G+ ++V+++K  +E    +GR    SP + 
Sbjct: 340 SISDATKQERMDLLMSAQEKIAFETNEEKIGKTLKVVVDK--EESDYYIGRTEYDSPEVD 397

Query: 437 SVVLNSKNH--NIGDIIKVRITDVKISTLYGELV 468
             VL  KN   NIG+   V+ITD +   LYGE++
Sbjct: 398 PEVLIKKNKMLNIGEFYNVKITDTQSFDLYGEVI 431


>gi|239815572|ref|YP_002944482.1| ribosomal protein S12 methylthiotransferase [Variovorax paradoxus
           S110]
 gi|239802149|gb|ACS19216.1| MiaB-like tRNA modifying enzyme YliG [Variovorax paradoxus S110]
          Length = 468

 Score =  141 bits (355), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 127/480 (26%), Positives = 212/480 (44%), Gaps = 86/480 (17%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
            P+  FV S GC   + DS  +     ++GY+   + + ADL+++NTC   + A ++   
Sbjct: 15  APKVGFV-SLGCPKALTDSELILTQLSAEGYQTAKTFEGADLVIVNTCGFIDDAVKESLD 73

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEE----ILRRSPIVNVVVGPQTYYRLPE 138
            +G     +N R        V+V GC+    G++    + +  P V  V GP        
Sbjct: 74  TIGEALA-ENGR--------VIVTGCLGAKTGDQGGNLVRQMHPSVLAVTGPHAT----- 119

Query: 139 LLERARFGKRVVDTDYS----VEDKFERL---SIVDGGYNRKRGVTAFLTIQEGCDKFCT 191
                   + V+D  ++      D F  L   +    G        A+L I EGC+  CT
Sbjct: 120 --------QEVMDAVHANLPKPHDPFVDLVPNTFGIAGLKLTPRHYAYLKISEGCNHRCT 171

Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGL 240
           FC++P  RG  +SR +  V+ EA+ L + GV E+ ++ Q+ +A           W GK +
Sbjct: 172 FCIIPSMRGDLVSRPVGDVLGEAKALFEGGVKELLVISQDTSAYGVDVKYRTGFWDGKPV 231

Query: 241 DGEKCTFSDLLYSLSEIK----GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQ 296
              K    +L+ +L EI       VRL Y   +P       + A G +   +PYL +P+Q
Sbjct: 232 ---KTRMLELVRTLGEIAEPYGAWVRLHYVYPYPSVDEIIPLMASGQV---LPYLDVPLQ 285

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
                +LK M R  +  +  + + R R V P++ I S FI GFPGET+ +F   +D + +
Sbjct: 286 HSHPDVLKRMKRPASGEKNLERLARWREVCPELVIRSTFIAGFPGETEQEFEHLLDFIRE 345

Query: 357 IGYAQAFSFKYSPRLGTPGSN---MLEQVDENVKAERLLCLQK-----KLREQQVSFNDA 408
               +A  F YSP  G   ++   ML   +   +  R + + +     KLR++       
Sbjct: 346 AQIDRAGCFAYSPVAGATANDIPGMLPPAEREARRARFMEVAEAVSIAKLRQR------- 398

Query: 409 CVGQIIEVLIEKH---GKEKGKLVGRS----PWLQSVVL------NSKNHNIGDIIKVRI 455
            +G  ++VL++     G++ G  VGR+    P +   V        SK   +G+  + RI
Sbjct: 399 -IGATMQVLVDSAPGMGRKGG--VGRTYADAPEIDGTVRLLPPEKISKTLKVGEFTRARI 455


>gi|254477031|ref|ZP_05090417.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Ruegeria sp. R11]
 gi|214031274|gb|EEB72109.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Ruegeria sp. R11]
          Length = 473

 Score =  141 bits (355), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 127/462 (27%), Positives = 206/462 (44%), Gaps = 57/462 (12%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC   + DS R+     ++GY        AD +++NTC   + A  +    +G     
Sbjct: 38  SLGCPKALVDSERILTRLRAEGYGVSPDYSGADAVIVNTCGFLDSAKAESLEAIGEA--- 94

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               +KE G   V+V GC+  AE + I    P +  V GP  Y             ++V+
Sbjct: 95  ----LKENGK--VIVTGCLG-AEPDYIREHHPRILAVTGPHQY-------------EQVL 134

Query: 151 DTDYSV----EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           D  ++      + +  L    G     R  + +L I EGC+  C FC++P  RG   SR 
Sbjct: 135 DAVHAAVPPSPNPYVDLLPAAGVKLTPRHFS-YLKISEGCNHKCKFCIIPDMRGKLASRP 193

Query: 207 LSQVVDEARKLIDNGVCEITLLGQN-----------VNAWRGKGLDGE-KCTFSDLLYSL 254
              V+ EA KL+D GV E+ ++ Q+           VN W+    DGE +    DL   L
Sbjct: 194 AHAVLREAEKLVDAGVRELLVISQDTSAYGLDRKYDVNPWK----DGEVRSHIQDLSREL 249

Query: 255 SEIKG----LVRLRYTTSHPRDMSDCLIKAHGDLD-VLMPYLHLPVQSGSDRILKSMNRR 309
            ++       VRL Y   +P      LI    D D  L+PYL +P Q     +L+ M R 
Sbjct: 250 GKLAPADELWVRLHYVYPYPHVRE--LIPLMADPDNALLPYLDIPFQHAHPDVLRRMARP 307

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369
             A +    I+  R+  PDI + S FIVG+PGET+ +F+  +D +D+    +   FKY  
Sbjct: 308 AAAAKTLDEINAWRATCPDITLRSTFIVGYPGETEAEFQHLLDWMDEAQLDRVGCFKYEN 367

Query: 370 RLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVL---IEKHGKEKG 426
             G   +++ + V E VK ER     +K +    +  +A VGQ ++V+   I++ G    
Sbjct: 368 VDGARSNDLPDHVPEEVKQERWERFMEKAQAISEAKLEAKVGQTMQVIVDDIDEDGIATC 427

Query: 427 KLVGRSPWLQSVVL---NSKNHNIGDIIKVRITDVKISTLYG 465
           +    +P +   +     ++   +GD++ V + +     L+G
Sbjct: 428 RTKADAPEIDGNLFIDEGTEGLQVGDLVAVEVDEAGEYDLWG 469


>gi|307748320|gb|ADN91590.1| Ribosomal protein S12 methylthiotransferase rimO [Campylobacter
           jejuni subsp. jejuni M1]
 gi|315930962|gb|EFV09937.1| RNA modification enzyme, MiaB family protein [Campylobacter jejuni
           subsp. jejuni 327]
          Length = 439

 Score =  140 bits (354), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 104/371 (28%), Positives = 183/371 (49%), Gaps = 21/371 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + ++ S GC  N+ DS  M        YE  +    AD++++NTC   + A ++    + 
Sbjct: 3   KLYLMSLGCNKNLVDSEIMLGRL--SAYELCDEPSKADVLIVNTCGFIDSAKKES---IN 57

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            I +L   R K   D L+VV GC+ Q   EE+++  P V++  G   Y R+ E++ +   
Sbjct: 58  AILDLHEQRKK---DSLLVVTGCLMQRYREELMKELPEVDLFTGVGDYERIDEMILKKT- 113

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                ++ Y   +  +R  I+ G  +      AF+ I EGC++ C+FC +P  +G   SR
Sbjct: 114 -NLFSNSTYLQSENSKR--IITGSNSH-----AFIKIAEGCNQKCSFCAIPSFKGKLKSR 165

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            +S +V E + L+  G  + + + Q+ +++      GEK     L+  + +IKG+   R 
Sbjct: 166 EISSIVAELKDLVARGYKDFSFIAQDTSSYLFD--KGEKDGLIRLIDEVEKIKGIRAARI 223

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
              +P   S+ LIK     ++ + Y  +P+Q  SD +LK M R       +++++ ++S 
Sbjct: 224 LYLYPTSASEALIKRIIASEIFVNYFDMPLQHISDNMLKIMKRGANNTRLKEMLNLMKSA 283

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P+  + + FIVG PGE++ DF    + V   G+ +   F YS    T   +M EQV   
Sbjct: 284 -PNSFLRTGFIVGHPGESEADFEELCEFVKDFGFDRISVFAYSKEEDTAAFDM-EQVPFK 341

Query: 386 VKAERLLCLQK 396
           V  +RL  ++K
Sbjct: 342 VINKRLKIIEK 352


>gi|16081399|ref|NP_393736.1| hypothetical protein Ta0256 [Thermoplasma acidophilum DSM 1728]
 gi|10639399|emb|CAC11401.1| hypothetical protein [Thermoplasma acidophilum]
          Length = 401

 Score =  140 bits (354), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 126/453 (27%), Positives = 213/453 (47%), Gaps = 64/453 (14%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + + + YGC +N  ++    +   S+G   V+  D+AD+ ++ TC + +K  + +   L 
Sbjct: 2   KIYYEGYGCTLNQGETGLYVNKLLSEGSVLVSRPDEADISIIGTCAVIQKTEDHM---LK 58

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           RI  L  SR+       V V GC++  +G EI       N+           E ++R  F
Sbjct: 59  RIEEL--SRLGR-----VKVIGCLSAIKGSEISGG----NI-----------EAIDRNEF 96

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            +         ++  E  SI+D        + + + I +GC   C FC+    RG  +SR
Sbjct: 97  QQ--------FQEYLEDTSIIDAE------IMSGIPINQGCTGKCNFCISHIARGKLVSR 142

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
              ++V++ R ++  G  EI +   +  A+ GK           L+  ++ + G   LR 
Sbjct: 143 RPEKIVNQIRMMVAAGKREIRISSLDTAAY-GKDT---GYRLPSLIKDITAVDGDFMLRV 198

Query: 266 TTSHPR---DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
               PR   ++ D L++A+ D  V   +LH+PVQSG DR+L +MNR +T  E+ QII+  
Sbjct: 199 GMMEPRNTIEILDDLLEAYDDPKVF-KFLHIPVQSGDDRVLTAMNREYTVDEFMQIIESF 257

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG------- 375
           R   PD+ IS+D I+G+  E D  F  T DL+ K+        ++SPR  TP        
Sbjct: 258 RKRFPDMTISTDVIIGYHAENDRSFDLTCDLIRKVQPEIINVTRFSPRELTPDFEHRPRP 317

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWL 435
           +N+L+  D  +       + +K+  ++ S   A VG++  +LI + GK  G +VGR    
Sbjct: 318 TNVLKDQDRTMAE-----IHRKIVSERFS---ALVGKVERILITEDGK-PGTMVGRDASY 368

Query: 436 QSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           + VV+ +           RI   + ++L GELV
Sbjct: 369 RPVVIRAPAEKY-TWHSARIIGYENTSLIGELV 400


>gi|87199422|ref|YP_496679.1| MiaB-like tRNA modifying enzyme [Novosphingobium aromaticivorans
           DSM 12444]
 gi|87135103|gb|ABD25845.1| MiaB-like tRNA modifying enzyme [Novosphingobium aromaticivorans
           DSM 12444]
          Length = 398

 Score =  140 bits (354), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 108/406 (26%), Positives = 174/406 (42%), Gaps = 59/406 (14%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V S GC++N+ +S  +  +            D    +V+N+C +  +A  +         
Sbjct: 5   VISLGCRLNIAESEAIRGLI----------ADGPPTVVVNSCAVTAEAVRQSRRA----- 49

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
                  +E  +  +VV GC A                             +ER  F   
Sbjct: 50  --VRRLRRENPEARLVVTGCAAT----------------------------IERDAFAGM 79

Query: 149 V-VDTDYSVEDKFERLS--IVDGG--YNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           V VD       K E  S     G     R+    AF+ +Q GCD  CTFC++P  RG  +
Sbjct: 80  VEVDAVVPNAAKLEPSSWNAPTGARPLPRRAHTRAFIPVQNGCDHSCTFCIIPQGRGKSV 139

Query: 204 SRSLSQVVDEARKLI-------DNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256
           S  +  V+    + I          V E+ L G +V +W G  L       + +   L  
Sbjct: 140 SLPVVDVISAVERAIFALRPERHLTVHEVVLTGVDVTSW-GADLPSGPALGNLIAAILDA 198

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
              L RLR ++    ++   L         +MP++HL +QSG D +LK M RRH+  +  
Sbjct: 199 FPELPRLRLSSLDGVEIDPLLFDLITGEPRVMPHVHLSLQSGDDMVLKRMKRRHSRRDAI 258

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
           +++ R+++ RPDIA+ +D I GFP ET +  R  + +V + G      F YSPR GTP +
Sbjct: 259 ELVQRMKARRPDIAVGADLIAGFPTETPEMHRNNLSIVRECGIVHGHVFPYSPRPGTPAA 318

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422
            ++ QV+  V  ER   L+  +  ++  +  + VG+  +VL E+ G
Sbjct: 319 -LMPQVEPAVVRERAAELRAAVATERARWLASLVGKPAQVLAERDG 363


>gi|20090019|ref|NP_616094.1| 2-methylthioadenine synthase [Methanosarcina acetivorans C2A]
 gi|19914987|gb|AAM04574.1| 2-methylthioadenine synthase [Methanosarcina acetivorans C2A]
          Length = 435

 Score =  140 bits (354), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 118/451 (26%), Positives = 214/451 (47%), Gaps = 26/451 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVN--SMDDADLIVLNTCHIREKAAEKVYSF 83
           + +++S+GC  ++  +  M+      G+E +N  +  +A++ + N+C ++    +K+   
Sbjct: 2   KVYLESFGCSASLASAEIMKASVERLGHELLNPAAAGEAEVYICNSCTVKYTTEQKI--- 58

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL--- 140
           L +IR++    ++      V+V+GC+ + + EEIL  +P  +++ G     RL ELL   
Sbjct: 59  LYKIRSMGEKGVQ------VIVSGCMPEVQLEEILHANPEAHIL-GVNAISRLGELLSSI 111

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           E+ R           +    E L  ++    R         I +GC+  C++C+V + RG
Sbjct: 112 EQRRMEGLPAGGHLELRTS-EPLGFLNVPRERSNPNIHICQISQGCNFACSYCIVKHARG 170

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
              S    ++V + R  + +G  EI L  Q+ + +   G+D       +LL  +SEI G 
Sbjct: 171 KLRSFPPEKIVKDIRSAVADGCREIWLTSQDDSQY---GMD-TGVKLPELLRMISEIPGD 226

Query: 261 VRLRYTTSHPRD---MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
            ++R    +P     + D L+ A  D D +   LHLP+QS S  +LK MNR H      +
Sbjct: 227 FKVRVGMMNPFSVLPILDGLVDAF-DSDKVFKLLHLPIQSASHSVLKKMNRLHKMDAVDE 285

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
           II + R+   D+++ +D IVGF  ETD+DF  T++ V K    +    +YSPR  T   +
Sbjct: 286 IITKFRARFEDLSLFTDIIVGFCDETDEDFEETIEWVKKYRPEKINISRYSPRPHTKAFS 345

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQS 437
               +D  +  +R   L K   + ++      +G    V + K+  E G ++ R+   + 
Sbjct: 346 -FRNLDSRISVQRSHELHKVCEQIKLGSKQEMIGWKGRVFVSKY-TEIGDVLTRTDAYRP 403

Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           VV++  +   G+   V IT  K     G ++
Sbjct: 404 VVISGSDLKPGEYANVEITGAKPGYFLGRII 434


>gi|281420874|ref|ZP_06251873.1| 2-methylthioadenine synthetase [Prevotella copri DSM 18205]
 gi|281405166|gb|EFB35846.1| 2-methylthioadenine synthetase [Prevotella copri DSM 18205]
          Length = 536

 Score =  140 bits (354), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 120/460 (26%), Positives = 198/460 (43%), Gaps = 53/460 (11%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N  ++     M    G       + AD+ ++NTC + E A  K    + R+   
Sbjct: 80  TLGCKLNFSETSTFGKMLEDMGVITAKRGEKADICLINTCSVTEVADHKCRQAIHRM--- 136

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA---RFGK 147
               ++      V+V GC AQ E E + +    V++V+G      L + L  A   +F +
Sbjct: 137 ----VRNNPGAFVIVTGCYAQLESENVSKIEG-VDLVLGANEKAHLIQYLSNAWAQKFAQ 191

Query: 148 R----------------------VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEG 185
                                   +   YSV+ K   +       +R      FL +Q+G
Sbjct: 192 ENGLAAQTPQNGDAESSQNGDAASLHQHYSVKTK--EIKTFQPSCSRGNRTRYFLKVQDG 249

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C+ +CT+C +P+ RG   + S+  +V +  +    G  EI + G N+  +     +    
Sbjct: 250 CNYYCTYCTIPFARGNSRNPSIQSLVAQCEQAAAEGGKEIVITGVNIGDFGQTTHE---- 305

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
            F DL+ ++ +++G+ R R ++  P    D LI+        MP+ H+P+QSGSD +LK 
Sbjct: 306 RFIDLVKAMDQVEGIKRYRISSLEPDLCDDDLIEYCAQSRAFMPHFHIPLQSGSDEVLKL 365

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           M+RR+    +   ++ I+   PD  I  D +VG  GET + F    + +  +   Q   F
Sbjct: 366 MHRRYDKALFAHKVNLIKEKMPDAFIGVDVMVGCRGETPECFEECYEFLKSLPVTQLHVF 425

Query: 366 KYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK----- 420
            YS R GT    +   VDE  K +R   L +   ++   F    +G   EVL EK     
Sbjct: 426 PYSERPGTAALKIPYVVDEKEKKKRSKRLLELSDQKTQEFYAQYIGTEAEVLFEKAPRGK 485

Query: 421 --HGKEKGKL-VGRSPWLQSVVLNSKNHNIGDIIKVRITD 457
             HG  K  + V  SP L      +K      +IKVR+ D
Sbjct: 486 AMHGFTKNYIRVELSPAL------AKEEYDNQLIKVRLGD 519


>gi|289596431|ref|YP_003483127.1| MiaB-like tRNA modifying enzyme [Aciduliprofundum boonei T469]
 gi|289534218|gb|ADD08565.1| MiaB-like tRNA modifying enzyme [Aciduliprofundum boonei T469]
          Length = 404

 Score =  140 bits (354), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 122/453 (26%), Positives = 215/453 (47%), Gaps = 64/453 (14%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + ++++YGC  N+ ++    +M      E V+  ++AD+I++ TC + E    ++   L 
Sbjct: 2   KVYLEAYGCSQNIAET----NMLGQAMGEIVSRPEEADVILIGTCVVIEHTENRM---LR 54

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           RI  LK    K      +VV GC+  A       R  ++++ V P   +           
Sbjct: 55  RIEELKRYGKK------IVVYGCLPSA-------RKELLDIDVVPIATWEF-------EM 94

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
              +++ D S  D+   + I D          A + I  GC   CT+C+    RG   SR
Sbjct: 95  AGEILNLDRSPMDE---VFIWDA--------VATIPIANGCLGQCTYCITRLARGRVKSR 143

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           S   ++   +K ++    EI +  Q+  A+ G+ +  E    ++L+ S++ I G   LR 
Sbjct: 144 SKEWILRLVKKALEQRAVEIRISAQDTAAY-GRDIGTE---LAELINSITAIPGKFYLRV 199

Query: 266 TTSHPRD---MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
               PR+   +   LI A+ +  V   +LHLPVQSG + IL  MNR +   ++ +I+   
Sbjct: 200 GMMEPRETLRILPELIDAYSNPKVYK-FLHLPVQSGDNEILHRMNRGYKVEDFIKIVRNF 258

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG------- 375
           R   P++ +S+D IVGFPGE D+ F  TM L+ +I        ++SPR  TP        
Sbjct: 259 RQRFPEMTLSTDIIVGFPGENDESFENTMKLIKEIKPEILNITRFSPRPKTPAYKWKRPS 318

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWL 435
           +N +++  + + A  +  + K+         ++ +G+  +V++   GK +GK + RS   
Sbjct: 319 TNKVKEWSQKLAALHMENMHKRF--------ESMLGKEFKVIVPSRGK-RGKYLARSQNY 369

Query: 436 QSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           + VVL+  N  IG    +RIT  + S L G+++
Sbjct: 370 EPVVLD--NAVIGREYIIRITHYEKSHLVGKIL 400


>gi|315124891|ref|YP_004066895.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Campylobacter
           jejuni subsp. jejuni ICDCCJ07001]
 gi|315018613|gb|ADT66706.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Campylobacter
           jejuni subsp. jejuni ICDCCJ07001]
          Length = 439

 Score =  140 bits (353), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 104/375 (27%), Positives = 186/375 (49%), Gaps = 21/375 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + ++ S GC  N+ DS  M        YE  +    AD++++NTC   + A ++    + 
Sbjct: 3   KLYLMSLGCNKNLVDSEIMLGRL--SAYELCDEPSKADVLIVNTCGFIDSAKKES---IN 57

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            I +L   R K   D L+VV GC+ Q   EE+++  P V++  G   Y R+ E++ +   
Sbjct: 58  AILDLHEQRKK---DSLLVVTGCLMQRYREELMKELPEVDLFTGVGDYERIDEMILKKT- 113

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                ++ Y   +  +R  I+ G  +      AF+ I EGC++ C+FC +P  +G   SR
Sbjct: 114 -NLFSNSTYLQSENSKR--IITGSNSH-----AFIKIAEGCNQKCSFCAIPSFKGKLKSR 165

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            +S ++ E + L+  G  + + + Q+ +++      GEK     L+  + +IKG+   R 
Sbjct: 166 EISSIIAELKDLVARGYKDFSFIAQDTSSYLFD--KGEKDGLIRLIDEVEKIKGIRAARI 223

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
              +P   S+ LIK     ++ + Y  +P+Q  SD +LK M R   +   +++++ ++S 
Sbjct: 224 LYLYPTSASEALIKRIIASEIFVNYFDMPLQHISDNMLKIMKRGANSTRLKEMLNLMKST 283

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P+  + + FIVG PGE++ DF    + V   G+ +   F YS    T   +M EQV   
Sbjct: 284 -PNSFLRTGFIVGHPGESEADFEELCEFVKDFGFDRVSVFAYSKEEDTAVFDM-EQVPFK 341

Query: 386 VKAERLLCLQKKLRE 400
           V  +RL  ++K + E
Sbjct: 342 VINKRLKIIEKIVDE 356


>gi|329939936|ref|ZP_08289218.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Streptomyces
           griseoaurantiacus M045]
 gi|329300762|gb|EGG44658.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Streptomyces
           griseoaurantiacus M045]
          Length = 462

 Score =  140 bits (353), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 112/401 (27%), Positives = 178/401 (44%), Gaps = 37/401 (9%)

Query: 50  SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCV 109
           + G++ V   +DAD+ V+NTC   + A +     L    +LK+     G    VV  GC+
Sbjct: 3   ADGWQLVEDAEDADVAVVNTCGFVDAAKKDSVDALLEANDLKD----HGRTRAVVAVGCM 58

Query: 110 AQAEGEEILRRSPIVNVVVGPQTYYRLPELL--------------------------ERA 143
           A+  G+E+    P  + V+G   Y  + + L                          ER 
Sbjct: 59  AERYGKELAEALPEADGVLGFDDYADISDRLQTILSGGIHAAHTPRDRRKLLPISPAERQ 118

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYN--RKR---GVTAFLTIQEGCDKFCTFCVVPYT 198
             G  V    +   D  E L+   G     R+R    + A + +  GCD+ C+FC +P  
Sbjct: 119 EAGTAVALPGHGPVDLPEGLAPASGPRAPLRRRLGGALVASVKLASGCDRRCSFCAIPSF 178

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258
           RG  ISR  S V++E R L + GV E+ L+ +N N   GK L G+      LL  L+E+ 
Sbjct: 179 RGSFISRRPSDVLNETRWLAEQGVKEVMLVSEN-NTSYGKDL-GDIRLLESLLPELAEVD 236

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           G+ R+R +   P +M   LI        + PY  L  Q  +  +L++M R      + ++
Sbjct: 237 GIERVRVSYLQPAEMRPGLIDVLTSTPKVAPYFDLSFQHSAPGVLRAMRRFGDTDRFLEL 296

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           +D IR+  P+  + S+FIVGFPGE++ D       ++         F YS   GT  +  
Sbjct: 297 LDTIRNKAPEAGVRSNFIVGFPGESEADLAELERFLNGARLDAIGVFGYSDEDGTEAATY 356

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419
             ++D +  AERL  + +   E      D  +G  + VL+E
Sbjct: 357 ENKLDADTVAERLDRVSRLAEELVAQRADERLGSTVHVLVE 397


>gi|228470161|ref|ZP_04055070.1| conserved hypothetical protein [Porphyromonas uenonis 60-3]
 gi|228308299|gb|EEK17154.1| conserved hypothetical protein [Porphyromonas uenonis 60-3]
          Length = 443

 Score =  140 bits (353), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 122/451 (27%), Positives = 207/451 (45%), Gaps = 36/451 (7%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDD--ADLIVLNTC-HIREKAAE 78
           ++  +  V S GC  N+ DS  +       GY   +  ++   ++ V+NTC  I+    E
Sbjct: 1   MIANQIDVISLGCSKNLVDSDALMRRLAQFGYTLRHDPEELTGEIAVVNTCGFIQAAQEE 60

Query: 79  KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPE 138
            +   L  I   K  RI+      V V GC+ +   EE+    P V+ + G   + +L  
Sbjct: 61  SINLILSLIEAKKEGRIRS-----VYVMGCLGERFREELTAELPEVDKIYGKYDWKQLIS 115

Query: 139 LLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
            L  A          Y         S+    Y       +++ I EGCD+ C++C +P  
Sbjct: 116 DLGPALSADSATPLSYRTPPP----SVTPRHY-------SYIKISEGCDRTCSYCAIPLI 164

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258
            G   SR + ++V E    +  G  E  ++ Q+ + + G  L  E+   + LL  L+++ 
Sbjct: 165 TGRHHSRPMEEIVREVEGRVSAGCREFQIIAQD-STYYGVDLYQEQA-IAPLLDRLAQVN 222

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           G+  LR   ++P      L+      D +  YL L +Q  S+ +L+ M R+ T  E   +
Sbjct: 223 GVHWLRLHYAYPNHFPLALLDVMAQHDNICKYLDLALQHSSNHMLQLMRRQITREETVAL 282

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG-SN 377
           ++RIR   P IA+ +  +VG PGETD+DF   +D V ++ + +  +F+YS   GT    +
Sbjct: 283 LERIREQVPGIALRTTMMVGHPGETDEDFADLLDFVSQMRFERLGAFQYSHEEGTYAYKH 342

Query: 378 MLEQVDENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR--- 431
             + V   VK ER   L+ LQ  +     S N   VG  +EV++++  +E+G  VGR   
Sbjct: 343 YQDDVPPEVKQERYDALMSLQANI---SASVNSRRVGTSLEVIVDR--EEEGYYVGRTQY 397

Query: 432 -SPWLQSVVLNSKNH--NIGDIIKVRITDVK 459
            SP +   V+ S +   ++G   +  IT V+
Sbjct: 398 DSPEVDGEVILSSDRPLHVGSFYRAEITGVE 428


>gi|222823704|ref|YP_002575278.1| MiaB-like tRNA modifying enzyme [Campylobacter lari RM2100]
 gi|222538926|gb|ACM64027.1| MiaB-like tRNA modifying enzyme [Campylobacter lari RM2100]
          Length = 418

 Score =  140 bits (353), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 107/424 (25%), Positives = 209/424 (49%), Gaps = 37/424 (8%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + Q+ + K++GC+ N+YD+  ++   + + +E V +  +AD+I++N+C +   A   + +
Sbjct: 1   MKQKVYFKTFGCRTNIYDTQLIKT--YIKDHEIVQNEQEADVIIINSCTVTNGADSGLRT 58

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL-LE 141
           ++       NS  K G  + V++ GC A ++G++   +  +  V+ G     ++ EL + 
Sbjct: 59  YI-------NSVKKNG--VKVILTGCGAISKGKDFFDKKEVFGVL-GASNKSKINELIMS 108

Query: 142 RARFGKRVVDTDYSVED-KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           +  F        Y + D KF    IV    N  +   AF+ IQEGCD  C++C++P  RG
Sbjct: 109 KKEF--------YEIGDLKFIDTKIVSDYENHTK---AFVKIQEGCDFACSYCIIPSVRG 157

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
              S    +++ + + L  NG  E+ L G N+ ++   GL  +K T   LL  + +I G+
Sbjct: 158 KSRSIPSDEIIKQIKLLAQNGYSEVVLTGTNIGSY---GLK-DKTTLGKLLQEIGKINGI 213

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R  +  P  + +   K   D   L  +LH+ +Q   +++L+ M RR        + +
Sbjct: 214 KRVRLGSLEPAQIDESF-KEILDEPWLERHLHIALQHTHEKMLRIMRRRSHTQNDLALFN 272

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
            +   +   A+ +DFIV  PGE++  ++  ++           +F +SPR GT  ++M E
Sbjct: 273 ELS--QKGFALGTDFIVAHPGESELIWQEALENFKHFKLTHIHAFIFSPRDGTHSASMKE 330

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GRSPWLQSVV 439
           +++  +  ERL  L+  + +    F      + +E+L+E    +KG+   G   +   + 
Sbjct: 331 RINGEIAKERLNILKDIVFQNNYEFRKNHKVK-LEILVE---NKKGEFYEGYDQFFNKIK 386

Query: 440 LNSK 443
           ++SK
Sbjct: 387 ISSK 390


>gi|118576134|ref|YP_875877.1| 2-methylthioadenine synthetase [Cenarchaeum symbiosum A]
 gi|118194655|gb|ABK77573.1| 2-methylthioadenine synthetase [Cenarchaeum symbiosum A]
          Length = 421

 Score =  140 bits (353), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 129/448 (28%), Positives = 211/448 (47%), Gaps = 37/448 (8%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R ++++YGC  +  DS  +  +  + G+    S +++D  V+ TC +++  A ++     
Sbjct: 3   RIWIEAYGCSASQADSEMISGLLVNGGHTLAASPEESDAGVIVTCAVKDATANRMVH--- 59

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                   RIK  G   +VVAGC+ +AE   + R SP    ++GP +  R   ++E A  
Sbjct: 60  --------RIKMLGGRPLVVAGCLPKAEPGTMARISPGA-ALMGPNSIGRTVPVVEAALR 110

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G+R ++ D   +    +  +     N   G+   + I  GC   CTFC     +G   S 
Sbjct: 111 GERRIELD---DTDLTKTGLPKVRLNEAVGI---VEIASGCLSECTFCQTKLAKGDLGSY 164

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            +  +V + R  +D+G  E+ L   +   +   G D  +     LL ++  I G  R+R 
Sbjct: 165 RIGDIVRQVRAEVDDGCSEVWLTSTDNGCY---GFDISE-DLPGLLDAVITIPGRFRVRV 220

Query: 266 TTSHPRDMS---DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
              +P  M    + L K+    D L  +LH+PVQSGS RIL  M R  TA  +     R 
Sbjct: 221 GMMNPMYMPRIREGLAKSF-QSDKLYRFLHIPVQSGSGRILGEMGRGRTAGIFADAARRF 279

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           RS      IS+D IVGFPGETD D+ +T  L++++        +YS R GT  +   EQV
Sbjct: 280 RSEFGGFTISTDVIVGFPGETDGDYESTEALIEEVRPDTVNLSRYSARPGTEAAGR-EQV 338

Query: 383 D-ENVK--AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV 439
           D + VK  ++R+  L  ++    +  N   VG   +VL  +    +G + GR+   + V 
Sbjct: 339 DVQTVKRRSKRMYELSCRI---SLDRNKEWVGWKGDVLFSE--ATEGGIRGRNREYKPVY 393

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGEL 467
             ++   +G+  +VRIT      L GE+
Sbjct: 394 --AEGAVLGETRQVRITKATNHCLVGEI 419


>gi|317490536|ref|ZP_07949013.1| MiaB family RNA modification enzyme [Eggerthella sp. 1_3_56FAA]
 gi|316910351|gb|EFV31983.1| MiaB family RNA modification enzyme [Eggerthella sp. 1_3_56FAA]
          Length = 355

 Score =  140 bits (353), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 110/377 (29%), Positives = 173/377 (45%), Gaps = 48/377 (12%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           F V + GC++N  +S         +G E   +   ADLIV+NTC +  +A +K    + R
Sbjct: 10  FAVVNLGCKVNRVESDDAAARLALRGVETPEA--SADLIVVNTCTVTGEAEKKTRKAVRR 67

Query: 87  -IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +R   ++R        V+V GC A  +          V+VV   Q    +  L + A F
Sbjct: 68  ALRANDHAR--------VLVTGCAAAIDAAFYEALDERVSVVGKAQLAQAIDALFDEAPF 119

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                  D  +         +  G+  + GV     +Q+GCD  CT+C+V   RG   SR
Sbjct: 120 SP---GEDAPLH--------IGSGFRTRVGVK----VQDGCDNACTYCIVHVARGRATSR 164

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDL--------------- 250
               VV E       G  EI L G N+ ++     DG +   S +               
Sbjct: 165 PADDVVRECAAYARAGAREIVLTGINLGSY----CDGGRRDPSAIRLAALLRRLLDETAD 220

Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLD-VLMPYLHLPVQSGSDRILKSMNRR 309
           L++  E     R R ++  PRD+ D L+      D  +  +LHLP+Q+GS ++L+ M R 
Sbjct: 221 LHAPGEAPA--RFRVSSIEPRDVDDALVDLLASADGRVCRHLHLPLQAGSSKVLREMARP 278

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369
           + A  +  +++R+    P +A+S+D I GFPGETD +F+ T+D+     +A+  +F YSP
Sbjct: 279 YDAERFVALVERLYRRIPQLALSTDIIAGFPGETDAEFQETLDVARACRFAKIHAFPYSP 338

Query: 370 RLGTPGSNMLEQVDENV 386
           R GTP +   +QV   V
Sbjct: 339 RAGTPAAARADQVPPAV 355


>gi|153951469|ref|YP_001398743.1| putative tRNA modifying protein [Campylobacter jejuni subsp. doylei
           269.97]
 gi|152938915|gb|ABS43656.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Campylobacter
           jejuni subsp. doylei 269.97]
          Length = 455

 Score =  140 bits (353), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 102/371 (27%), Positives = 184/371 (49%), Gaps = 21/371 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + ++ S GC  N+ DS  M        YE  +    AD++++NTC   + A ++    + 
Sbjct: 19  KLYLMSLGCNKNLVDSEIMLGRL--SAYELCDEPSKADVLIVNTCGFIDSAKKES---IN 73

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            I +L   R K   D L+VV GC+ Q   EE+++  P V++  G   Y R+ E++ +   
Sbjct: 74  AILDLHEQRKK---DSLLVVTGCLMQRYREELMKELPEVDLFTGVGDYERIDEMILKK-- 128

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                ++ Y   +  +R  I+ G  +      AF+ I EGC++ C+FC +P  +G   SR
Sbjct: 129 TNLFSNSTYLQSENSKR--IITGSNSH-----AFIKIAEGCNQKCSFCAIPSFKGRLKSR 181

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            ++ ++ E + L+  G  + + + Q+ +++      GEK     L+  + +IKG+   R 
Sbjct: 182 QINSIIAELKDLVARGYKDFSFIAQDTSSYLFD--KGEKDGLIRLIDEVEKIKGIRAARI 239

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
              +P   S+ LIK     ++ + Y  +P+Q  SD +LK M R   +   +++++ ++S 
Sbjct: 240 LYLYPTSASEALIKRIIASEIFVNYFDMPLQHISDNMLKIMKRGTNSTRLKEMLNLMKSA 299

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P+  + + FIVG PGE++ DF    + V   G+ +   F YS    T   +M EQV   
Sbjct: 300 -PNSFLRTGFIVGHPGESEADFEKLCEFVKDFGFDRVSVFAYSKEEDTAAFDM-EQVPFK 357

Query: 386 VKAERLLCLQK 396
           V  +RL  ++K
Sbjct: 358 VINKRLKIIEK 368


>gi|291301726|ref|YP_003513004.1| MiaB-like tRNA modifying enzyme YliG [Stackebrandtia nassauensis
           DSM 44728]
 gi|290570946|gb|ADD43911.1| MiaB-like tRNA modifying enzyme YliG [Stackebrandtia nassauensis
           DSM 44728]
          Length = 479

 Score =  140 bits (353), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 115/469 (24%), Positives = 210/469 (44%), Gaps = 47/469 (10%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +R  V + GC  N  DS  +     + G+E  +   DAD++++NTC   E A +     L
Sbjct: 11  RRVAVVTLGCARNDVDSEELAARLANGGWEVTDDGSDADVVMVNTCGFIETAKQDSIDML 70

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
               +             VV  GC+A+  G ++    P  + V+G   Y  +   L+   
Sbjct: 71  LEASDTGAK---------VVATGCLAERYGTQLADSLPEADAVLGFDHYPDIAARLDAIA 121

Query: 145 FGKRVVD---TD------YSVEDKFERLSIVDGGYN---------------RKR---GVT 177
            G+++     TD       S   + E  +++ G                  R+R   G  
Sbjct: 122 RGEKIASHTPTDRRTLLPISPVKRREATAVIPGHAAPDTDDTAMPAHLKVMRRRLTSGPV 181

Query: 178 AFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG 237
           A L I  GCD+ C FC +P  RG  +SR   +++ EA+ L + GV E+TL+ +N  ++ G
Sbjct: 182 ANLKIASGCDRRCAFCAIPSFRGAFVSRDPGEILAEAQWLAEQGVVEVTLVSENTTSY-G 240

Query: 238 KGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQS 297
           K L  +      LL  L+ + G+ R+R +   P ++   L++       + PY  L  Q 
Sbjct: 241 KDL-SDAAALEKLLPQLAAVDGIERVRVSYLQPAELRPSLVETIATTPGVAPYFDLSFQH 299

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
            S  +L+ M R  +   + ++++ IR + P   + ++ IVGFPGETD D       + + 
Sbjct: 300 SSRDLLRRMRRFGSTEGFLELLETIRGLSPLAGVRTNVIVGFPGETDADAAELERFLSQA 359

Query: 358 GYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER---LLCLQKKLREQQVSFNDACVGQII 414
                  F YS   GT  +++   VDE+V  +R   +  L +++  Q+ +     +G+ +
Sbjct: 360 RLDAVGVFSYSDEDGTEAADLDGHVDEDVIVKRHDHISVLAEEVTAQRAAER---IGETV 416

Query: 415 EVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTL 463
            V+++    +   + GR+   Q+  ++     IG++  +R  D+  +T+
Sbjct: 417 SVVVDS--ADDSGVDGRAAH-QAPEVDGSTALIGEVDGLRPGDIVSATV 462


>gi|238065379|sp|A7H5G3|RIMO_CAMJD RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
          Length = 439

 Score =  140 bits (352), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 102/371 (27%), Positives = 184/371 (49%), Gaps = 21/371 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + ++ S GC  N+ DS  M        YE  +    AD++++NTC   + A ++    + 
Sbjct: 3   KLYLMSLGCNKNLVDSEIMLGRL--SAYELCDEPSKADVLIVNTCGFIDSAKKES---IN 57

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            I +L   R K   D L+VV GC+ Q   EE+++  P V++  G   Y R+ E++ +   
Sbjct: 58  AILDLHEQRKK---DSLLVVTGCLMQRYREELMKELPEVDLFTGVGDYERIDEMILKK-- 112

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                ++ Y   +  +R  I+ G  +      AF+ I EGC++ C+FC +P  +G   SR
Sbjct: 113 TNLFSNSTYLQSENSKR--IITGSNSH-----AFIKIAEGCNQKCSFCAIPSFKGRLKSR 165

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            ++ ++ E + L+  G  + + + Q+ +++      GEK     L+  + +IKG+   R 
Sbjct: 166 QINSIIAELKDLVARGYKDFSFIAQDTSSYLFD--KGEKDGLIRLIDEVEKIKGIRAARI 223

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
              +P   S+ LIK     ++ + Y  +P+Q  SD +LK M R   +   +++++ ++S 
Sbjct: 224 LYLYPTSASEALIKRIIASEIFVNYFDMPLQHISDNMLKIMKRGTNSTRLKEMLNLMKSA 283

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P+  + + FIVG PGE++ DF    + V   G+ +   F YS    T   +M EQV   
Sbjct: 284 -PNSFLRTGFIVGHPGESEADFEKLCEFVKDFGFDRVSVFAYSKEEDTAAFDM-EQVPFK 341

Query: 386 VKAERLLCLQK 396
           V  +RL  ++K
Sbjct: 342 VINKRLKIIEK 352


>gi|294900097|ref|XP_002776898.1| 2-methylthioadenine synthetase, putative [Perkinsus marinus ATCC
           50983]
 gi|239884099|gb|EER08714.1| 2-methylthioadenine synthetase, putative [Perkinsus marinus ATCC
           50983]
          Length = 554

 Score =  140 bits (352), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 104/448 (23%), Positives = 208/448 (46%), Gaps = 45/448 (10%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           Q+ F K++GC  N  DS  M  +    GY+ V  + DAD++VLN+C ++  + + + + +
Sbjct: 124 QKIFFKTFGCSHNTSDSEYMMGLLSRYGYDFVGKIADADVVVLNSCTVKNPSEDALATLV 183

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEE-ILRRSPIVNVVVGPQTYYRLPELLERA 143
                    +  E   L  VV GCV QA+ +   LR + +V    G     R+ E++E  
Sbjct: 184 ---------KAAEAEGLPTVVCGCVPQADRKSRALRNASLV----GTSQIDRIVEVVEET 230

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             G RV         +   L  +     R+  +   + +  GC   C++C   Y RG   
Sbjct: 231 LRGNRVSLLQSKKLPELRELPKI-----RRNPLVEIVAVNTGCLGKCSYCKTKYARGSLG 285

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-------------GEKCTFSDL 250
           S S   ++   R  +  GV +I L  +++ A+   GLD             GE   + D 
Sbjct: 286 SYSKEDIIARVRTALAEGVQQIWLTSEDLGAY---GLDIGTNVAELLREIVGELEKYPDS 342

Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
           +  L    G+    Y   H  +++  L         +  ++H+P+QSGS+ +L+ M R +
Sbjct: 343 MMRL----GMTNPPYILQHAEEVAKILTHPQ-----VFEFIHIPIQSGSNDVLRHMIREY 393

Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370
           T  ++ +++  +R+  P++ +++D I GFP E++++ R T++L+ +  +      ++  R
Sbjct: 394 TVEDFDRLVGILRARVPNLTVATDVICGFPTESEENHRETLELIKRHRFPVINISQFYAR 453

Query: 371 LGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG 430
            GT  + +  ++   V  ER   +        ++ +   +G+++EV  ++  + +G+ VG
Sbjct: 454 PGTAAARIRPRLPGKVIKERSTEVTNLFMSYSLTDSLYDIGEVVEVWYDEVDEGRGQTVG 513

Query: 431 RSP-WLQSVVLNSKNHNIGDIIKVRITD 457
            +  + ++V+L      +G  ++ R+ D
Sbjct: 514 HTKRYTKAVLLGIHKGVLGKKMRARVED 541


>gi|320451208|ref|YP_004203304.1| hypothetical protein TSC_c21520 [Thermus scotoductus SA-01]
 gi|320151377|gb|ADW22755.1| conserved hypothetical protein [Thermus scotoductus SA-01]
          Length = 437

 Score =  140 bits (352), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 124/446 (27%), Positives = 212/446 (47%), Gaps = 36/446 (8%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R   ++ GC++N  ++  +     +   E V     ADL+V+NTC +   A       + 
Sbjct: 5   RAAFRTLGCKVNQVETEALLGFLKALEPEVVPLEAGADLVVINTCAVTTTAEADARKEIR 64

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R R     R   G    +VV GC A+   EE+  R    + VV       LP+++    F
Sbjct: 65  RAR-----RANPGA--FIVVTGCYAELSPEEV--RELGADAVVPNSRKAELPKVILE-HF 114

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G   + +D       E     + G    R V AFL +Q+GC   C +C++P  RG E  R
Sbjct: 115 G---LPSDPITTPPNEFWGAGERGLLNSR-VRAFLKVQDGCQVGCAYCIIPRLRGKERHR 170

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRG--KGLDGEKCTFSDLLYSLSEIKGLVRL 263
                + EA  L+  G+ EI L G  + ++RG  +GL G      + LY L       ++
Sbjct: 171 DYRDALAEAEALLRMGIKEIVLTGVRLGSYRGHPRGLAG----LVEDLYHLG-----AKV 221

Query: 264 RYTTSHPRDMSDCLIKAHGDLDV-LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           R ++  P D  + L++        + P+LHL +Q+GSDR+L+ M RR+    YR ++ R 
Sbjct: 222 RLSSIEPEDTGEDLLRVIARYAPGVRPHLHLSLQTGSDRLLRLMGRRYDKAYYRNLVQRA 281

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
             + P  A+++D I G P ET+++ + T+  ++++   +  +F Y+PR  T  ++M  QV
Sbjct: 282 YELIPGFALTTDVIAGLPTETEEEHQETLTFLEELRPTRVHAFTYTPRPKTRAASM-PQV 340

Query: 383 DENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV 439
              V+  R   ++ L ++L E+++      +G  +EVL+E+   + G  +G +P      
Sbjct: 341 PPEVRKRRTKEIIALAQRLAEERIRPK---LGSQVEVLVER--IQGGLALGHTPDYYEAR 395

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYG 465
           L S +   GD +  R+   +  TL G
Sbjct: 396 L-SGSARPGDTVLARVEGAEGYTLLG 420


>gi|289606980|emb|CBI60926.1| unnamed protein product [Sordaria macrospora]
          Length = 315

 Score =  140 bits (352), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 99/334 (29%), Positives = 158/334 (47%), Gaps = 37/334 (11%)

Query: 62  ADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRS 121
           AD++++NTC   + A E+    +G         I E G   V+V GC+ Q E E I  R 
Sbjct: 8   ADVVLVNTCGFLDSAKEESLEAIGEA-------IAENGR--VIVTGCMGQ-EAETIRARF 57

Query: 122 PIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLT 181
           P V  V G   Y ++ + +  A            +   F  L + + G        ++L 
Sbjct: 58  PQVLAVTGAHQYEQVVDAVHEAA---------PPIPSPFVDL-VPESGLKLTPRHYSYLK 107

Query: 182 IQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA------- 234
           I EGC+  C+FC++P  RG  +SR    ++ EA KL+  G  E+ ++ Q+ +A       
Sbjct: 108 ISEGCNHRCSFCIIPSIRGDLVSRRPDAILREAEKLVAAGTKELLVISQDTSAYGIDIRR 167

Query: 235 ----WRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY 290
               W+G+ +       +DL   L  I   VRL Y   +P   S   + A G   +++PY
Sbjct: 168 ESRAWKGREVVPH---MTDLARELGRIAPWVRLHYVYPYPNVDSIIPLMAEG---LVLPY 221

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
           L +P Q  S  +LK+M R     +  + +   R V PDIAI S F+VGFPGET+ DF+  
Sbjct: 222 LDIPFQHASPNVLKAMKRPANDAKVLERLRGWREVCPDIAIRSSFVVGFPGETEADFQYL 281

Query: 351 MDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           +D +D+    +  +F++ P  G   + + + V E
Sbjct: 282 LDWLDEAQLDRVGAFRFEPVEGAAANALPDPVPE 315


>gi|145220314|ref|YP_001131023.1| MiaB-like tRNA modifying enzyme [Prosthecochloris vibrioformis DSM
           265]
 gi|145206478|gb|ABP37521.1| MiaB-like tRNA modifying enzyme [Chlorobium phaeovibrioides DSM
           265]
          Length = 451

 Score =  140 bits (352), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 106/354 (29%), Positives = 168/354 (47%), Gaps = 32/354 (9%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL-GRIRN 89
           + GC++N  ++  +      +G+      +  DLIV+++C + ++A +K    + G +R 
Sbjct: 13  TLGCKLNYAETASILQSLVERGWRIAGPQEQPDLIVVHSCAVTKQAEQKCRQKIRGLVRR 72

Query: 90  LKNSRIKEGGDLLVVVAGCVAQAEG-------EEILRRSPIVNVVVGPQTYYRLPELLER 142
             +SR+   G    +  G +A  EG       +E    S  + VV  P            
Sbjct: 73  HPDSRVVVTGCYAQLSPGLIADIEGVDAVLGNDEKFDSSSYMGVVAAPPPA--------- 123

Query: 143 ARFGKRVVDTDYSVEDKF---ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
              GK VV    S E  F    R   +  G   +R   AFL +Q+GCD  C +C +P  R
Sbjct: 124 ---GKPVVCV--SDEGGFLTAHRACSLPSGSEGER-TRAFLKLQDGCDYGCAYCTIPLAR 177

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G   S     V+ +A+ L D+G  EI L G N   +R  G  G    F +LL  L +I  
Sbjct: 178 GRSRSVPPEVVLQQAQMLADSGYREIVLTGVNTGDYR-SGTTG----FLELLRMLEDID- 231

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           + R+R ++  P  ++D L+        ++P+ HLP+Q+GSDRIL +M RR+   +YR+ +
Sbjct: 232 VPRIRISSLEPDILTDELVALVAASRTIVPHFHLPLQNGSDRILGAMRRRYRTADYRERL 291

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
                   D A+ +D +VG+PGE DDDF  T+  ++ +  A    F  S R GT
Sbjct: 292 LGAVDAIEDCAVGADVMVGYPGENDDDFGDTVRFIEGLPLAYFHVFSCSVRPGT 345


>gi|213609974|ref|ZP_03369800.1| hypothetical protein SentesTyp_05377 [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
          Length = 292

 Score =  140 bits (352), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 96/296 (32%), Positives = 149/296 (50%), Gaps = 25/296 (8%)

Query: 105 VAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFER-L 163
           V GC+   E ++I    P V  + GP +Y ++ + +             Y  + K    L
Sbjct: 1   VTGCLGAKE-DQIREVHPKVLEITGPHSYEQVLQHVHH-----------YVPKPKHNPFL 48

Query: 164 SIV-DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGV 222
           S+V + G        A+L I EGC+  CTFC++P  RG  +SR +  V+ EA++L+D GV
Sbjct: 49  SLVPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGDLVSRPIGDVLSEAKRLVDAGV 108

Query: 223 CEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMS 274
            EI ++ Q+ +A+      R    +GE  K +   L   LS++    RL Y   +P    
Sbjct: 109 KEILVISQDTSAYGVDVKHRTGFHNGEPMKTSMVSLCEQLSKLGVWTRLHYVYPYPHVDD 168

Query: 275 DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSD 334
              + A G +   +PYL +P+Q  S RILK M R  +       I + R + P++ + S 
Sbjct: 169 VIPLMAEGKI---LPYLDIPLQHASPRILKLMKRPGSVDRQLARIKQWREICPELTLRST 225

Query: 335 FIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER 390
           FIVGFPGET++DF+  +D + +    +   FKYSP  G   + + +QV E VK ER
Sbjct: 226 FIVGFPGETEEDFQMLLDFLKEARLDRVGCFKYSPVEGAGANELPDQVPEEVKEER 281


>gi|119596724|gb|EAW76318.1| CDK5 regulatory subunit associated protein 1, isoform CRA_a [Homo
           sapiens]
          Length = 291

 Score =  140 bits (352), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 66/193 (34%), Positives = 118/193 (61%), Gaps = 3/193 (1%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ ++++YGCQMNV D+     +    GY R +++ +AD+I+L TC IREKA + +++ L
Sbjct: 100 RKVYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCSIREKAEQTIWNRL 159

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            +++ LK  R +    L + + GC+A+   EEIL R  +V+++ GP  Y  LP LL  A 
Sbjct: 160 HQLKALKTRRPRSRVPLRIGILGCMAERLKEEILNREKMVDILAGPDAYRDLPRLLAVAE 219

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G++  +   S+++ +  +  V    +     +AF++I  GCD  C++C+VP+TRG E S
Sbjct: 220 SGQQAANVLLSLDETYADVMPVQTSAS---ATSAFVSIMRGCDNMCSYCIVPFTRGRERS 276

Query: 205 RSLSQVVDEARKL 217
           R ++ +++E +KL
Sbjct: 277 RPIASILEEVKKL 289


>gi|57168872|ref|ZP_00368002.1| MiaB-like tRNA modifying enzyme [Campylobacter coli RM2228]
 gi|305431977|ref|ZP_07401144.1| 2-methylthioadenine synthetase [Campylobacter coli JV20]
 gi|57019708|gb|EAL56394.1| MiaB-like tRNA modifying enzyme [Campylobacter coli RM2228]
 gi|304445061|gb|EFM37707.1| 2-methylthioadenine synthetase [Campylobacter coli JV20]
          Length = 418

 Score =  140 bits (352), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 105/397 (26%), Positives = 194/397 (48%), Gaps = 29/397 (7%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + ++ F K++GC+ N+YD+  ++   + + YE VN  + A +IV+N+C +   A   + S
Sbjct: 1   MKEKVFFKTFGCRTNIYDTELLKS--YVKDYEIVNDEEKAQIIVVNSCTVTNGADSGIKS 58

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
           ++       NS  K+G  + V++ GC A ++G+E+L +  +  V+ G     ++ E L  
Sbjct: 59  YI-------NSMQKKG--VRVILTGCGAVSKGKELLDKKQVFGVL-GASNKDKINEFLGL 108

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
                 + + ++  +D      IV    N  +   AF+ IQEGCD  C++C++P  RG  
Sbjct: 109 KTSFYELGNLNFIDKD------IVCEYENHTK---AFVKIQEGCDFACSYCIIPSVRGKS 159

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            S     ++ +   L  NG  E+ L G N+ ++   GL     T   LL  + +I G+ R
Sbjct: 160 RSVDEQALLRQVEILGANGYSEVVLTGTNIGSY---GLKN-GTTLGKLLQKMGQISGIKR 215

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R  +  P  + +  ++   D   +  +LH+ +Q  S+++L+ M RR       ++ + I
Sbjct: 216 IRLGSLEPAQIDESFLEIL-DERWMERHLHIALQHTSEKMLRIMRRRSHTDNDLKLFNTI 274

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
            S     A+ +DFIVG PGET++ +   +    +       +F +SPR  T  + M + +
Sbjct: 275 AS--KGYALGTDFIVGHPGETEELWHEALKHFQEFPLTHIHAFIFSPRNNTHSATMKDTI 332

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419
           +  V  ERL  L+  +      F    V   +E+L+E
Sbjct: 333 NGAVAKERLNTLKVIIENNNYEFRKR-VKTPLEILVE 368


>gi|308184088|ref|YP_003928221.1| hypothetical protein HPSJM_01540 [Helicobacter pylori SJM180]
 gi|308060008|gb|ADO01904.1| hypothetical protein HPSJM_01540 [Helicobacter pylori SJM180]
          Length = 418

 Score =  140 bits (352), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 110/392 (28%), Positives = 188/392 (47%), Gaps = 39/392 (9%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF--FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           ++ + K++GC+ N++D+  M +    FS   E      +AD+IV+N+C +   A   V S
Sbjct: 2   KKVYFKTFGCRTNLFDTQVMGENLKDFSATLEE----QEADIIVINSCTVTNGADSAVRS 57

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-E 141
           +  ++  L            V+  GC  + +G+E+  +   +  V G     ++  LL E
Sbjct: 58  YAKKMARLNKE---------VLFTGCGVKTQGKELFEKG-FLKGVFGHDNKEKINALLQE 107

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           + RF       D ++E+K    ++V     + R   AF+ IQEGCD  C +C++P  RG 
Sbjct: 108 KKRFF-----IDDNLENKHLDTTMVSEFVGKTR---AFIKIQEGCDFDCNYCIIPSVRGR 159

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
             S    +++++   L   GV E+ L G NV ++   G D E    + L+  LS+I GL 
Sbjct: 160 ARSFEERKILEQVGLLCSKGVQEVVLTGTNVGSY---GKDKE-SNIARLIKKLSQITGLK 215

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R  +  P  + +       + D L  +LH+ +Q   D +L+ MNRR+     R+++++
Sbjct: 216 RIRIGSLEPNQI-NDEFLELLEEDFLEKHLHIALQHSHDFMLERMNRRNRTKSDRELLEK 274

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I S   + AI +DFIVG PGE++  F      ++ +       F YS R  TP S M + 
Sbjct: 275 IAS--KNFAIGTDFIVGHPGESESVFEKAFKNLESLPLTHIHPFIYSKRKDTPSSLMHDS 332

Query: 382 VDENVKAERLLCLQ-------KKLREQQVSFN 406
           V      +RL  ++       K  R+ Q+  N
Sbjct: 333 VSLEDSKKRLNAIKDLIFHKNKAFRQLQLKLN 364


>gi|34558076|ref|NP_907891.1| 2-methylthioadenine synthetase [Wolinella succinogenes DSM 1740]
 gi|81637443|sp|Q9ZEN7|RIMO_WOLSU RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|3929906|emb|CAA10332.1| hypothetical protein [Wolinella succinogenes]
 gi|34483794|emb|CAE10791.1| conserved hypothetical protein-2-methylthioadenine synthetase
           [Wolinella succinogenes]
          Length = 439

 Score =  139 bits (351), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 108/398 (27%), Positives = 204/398 (51%), Gaps = 22/398 (5%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + ++  + S GC  N+ DS  M     S  YE    ++ AD+I++NTC   E A ++  S
Sbjct: 1   MSKKLHLISLGCTKNLVDSEVMLGRLKS--YEITPLIEKADVIIVNTCGFIEAAKQESLS 58

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            L         R K+G   ++V +GC+++   EE+LR  P ++++ G   Y ++ +++ R
Sbjct: 59  VLFEALE----RRKKGA--ILVASGCLSERYHEELLREIPEIDIITGVGDYDKIDQMV-R 111

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            R G    +   + E++ ER  ++ G       V A++ + EGC++ C+FC +P  +G  
Sbjct: 112 ERQGFHSGEVFLASEEQ-ER--VITGS-----SVHAYVKLSEGCNQTCSFCAIPQFKGKL 163

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-RGKGLDGEKCTFSDLLYSLSEIKGLV 261
            SR+L   + E + LI  G  + + + Q+ +++ R +   GEK     L+ +L  ++G+ 
Sbjct: 164 HSRTLESTLKEVKNLIAKGFTDFSFIAQDTSSYLRDR---GEKEGLIQLIGALDSLEGIK 220

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
             R    +P   S  LI+A     V+  Y  +P+Q  ++ +LK M R     +++++++R
Sbjct: 221 SARILYLYPSTASAKLIQAIQKSQVVQNYFDMPLQHIAESMLKRMKRGANQKKHKELLER 280

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R V P   + +  I+G PGE++++F      +++  + +   F YS   GT    M  +
Sbjct: 281 MRQV-PHSFVRTTLILGHPGESEEEFEELCRFLEEFRFDRVNLFAYSDEEGTSAHKMEGK 339

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419
           +D+ V   RL  L K +++Q  +     VGQ I V++E
Sbjct: 340 LDKRVINARLKRLDKIIQKQHRALLKEMVGQEIPVILE 377


>gi|325854348|ref|ZP_08171547.1| ribosomal protein S12 methylthiotransferase RimO [Prevotella
           denticola CRIS 18C-A]
 gi|325484142|gb|EGC87076.1| ribosomal protein S12 methylthiotransferase RimO [Prevotella
           denticola CRIS 18C-A]
          Length = 434

 Score =  139 bits (351), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 125/456 (27%), Positives = 203/456 (44%), Gaps = 51/456 (11%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDD--ADLIVLNTCHIREKAAEK----VYSFL 84
           + GC  N+ DS  +   F + GY   +  ++   ++ V+NTC   E A E+    +  F 
Sbjct: 10  TMGCSKNLVDSELIMKQFEANGYHCTHDAENPQGEIAVINTCGFIEAAKEESINTILEFA 69

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R +N + +R+         V GC++Q   +E+    P V+   G   Y +L   L +A 
Sbjct: 70  NRKKNGQLNRL--------YVMGCLSQRYKDELEAELPEVDKFYGKFNYKQLLSDLGKAD 121

Query: 145 F----GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
                G R + T +                       A++ I EGCD+ C +C +P   G
Sbjct: 122 IPACNGVRHLTTPHHY---------------------AYVKIAEGCDRHCAYCAIPLITG 160

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
              SR++  V+DE + L+  GV E  ++ Q +  + G  LDG K   ++L+  +++I+G+
Sbjct: 161 RHHSRTVEDVLDEVKGLVAQGVKEFQIIEQELTYY-GVDLDG-KHHITELISRMADIEGV 218

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
             +R   ++P      L+        +  YL +  Q  SD +L  M+R  T  E   +I 
Sbjct: 219 EWIRLHYAYPNQFPLDLLDVIAGKPNVCKYLDIAFQHISDHMLGRMHRHVTKQETLDLIA 278

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
            IR   P I + +  +VGFPGET+ DF      V ++ + +  +F YS   GT  +   E
Sbjct: 279 EIRRRVPGIHLRTTLLVGFPGETEKDFEELKTFVREVRFERMGAFAYSEEEGTYSATHYE 338

Query: 381 -QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWL 435
             V E VK +R+  L K  +          VG+  +V+I++   E    +GR    SP +
Sbjct: 339 DDVPEKVKQQRIDELMKIQQGISEELEGEKVGRGFKVIIDR--IEGEYYIGRTEFCSPEV 396

Query: 436 QSVVL---NSKNHNIGDIIKVRITDVKISTLYGELV 468
              VL     K    G    VRITD     L+GE+V
Sbjct: 397 DPEVLIPIEGKTLQTGRFYDVRITDSDEFDLFGEVV 432


>gi|148555837|ref|YP_001263419.1| MiaB-like tRNA modifying enzyme [Sphingomonas wittichii RW1]
 gi|148501027|gb|ABQ69281.1| MiaB-like tRNA modifying enzyme [Sphingomonas wittichii RW1]
          Length = 419

 Score =  139 bits (351), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 117/416 (28%), Positives = 179/416 (43%), Gaps = 42/416 (10%)

Query: 64  LIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPI 123
           L+++N+C +    AE V      IR     R +      +VV GC AQ +          
Sbjct: 31  LVIVNSCAV---TAEAVKQARKAIRQAAKRRPEA----RIVVTGCAAQTD---------- 73

Query: 124 VNVVVGPQTYYRLPEL---LERARFGK-------RVVDTDYSVEDKFE-RLSIVDGGYNR 172
                 P  +  +PE+   +  A  G+       R    D  V D    R +        
Sbjct: 74  ------PAAFAAMPEVARVIGNADKGRADLFAFDRGARADVHVSDVMAVRDTAPHMAAAF 127

Query: 173 KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNV 232
                AF+ +Q GCD  CTFCV+PY RG   S     V+D  + L+D+G  E+ L G ++
Sbjct: 128 AAHARAFVEVQNGCDHRCTFCVIPYGRGNSRSVPAGIVIDRIKALVDDGHAEVVLTGVDL 187

Query: 233 NAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLH 292
            ++ G  L G       +   L+ + GL RLR ++    ++ D L         +MP++H
Sbjct: 188 TSY-GPDLPGAPTLGQLVERILTHVPGLRRLRLSSLDSIEIDDRLFALLTQEARMMPHVH 246

Query: 293 LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352
           L +Q+G D ILK M RRH+  +   +++R+R+ RP+IAI +D I GFP E +     +  
Sbjct: 247 LSLQAGDDLILKRMKRRHSRAQAVAMVERLRAARPEIAIGADLIAGFPTEDETMAANSAA 306

Query: 353 LVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQ 412
           L+D         F +SPR GTP + M  Q+D      R   L+ +   ++  +    VG 
Sbjct: 307 LIDDCDIVFGHVFPFSPRAGTPAARM-PQLDRATIRRRAADLRARAEARRARWLGTLVGT 365

Query: 413 IIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
              VL E+ G       G +P    V         G I  + IT V    L G + 
Sbjct: 366 RQAVLAERGGG------GHAPNFARVRFEGTAPAPGAIANIIITGVDDGALTGRVA 415


>gi|291277351|ref|YP_003517123.1| putative MiaB-like tRNA modifying enzyme YliG [Helicobacter
           mustelae 12198]
 gi|290964545|emb|CBG40398.1| putative MiaB-like tRNA modifying enzyme YliG [Helicobacter
           mustelae 12198]
          Length = 438

 Score =  139 bits (351), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 104/393 (26%), Positives = 202/393 (51%), Gaps = 28/393 (7%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ DS  M  +   + Y+ ++    AD+I++NTC   + A E+    +G I  +
Sbjct: 8   SLGCTKNLVDSEVMLGVL--KEYKIIDDPSSADVIIINTCGFIQSAKEES---IGMILKM 62

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
              + KEG   L+V +GC+ Q   +E+  + P ++++ G   Y R+ E++E+    +R +
Sbjct: 63  AQEK-KEGA--LIVASGCLTQRYQKELREQIPEIDIITGVGDYDRIDEMIEQ----RRGI 115

Query: 151 DTD--YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
            +D  +  ++K ER  I+ G       + A++ I EGC++ C+FC +P  +G   SRS+ 
Sbjct: 116 SSDRVFLADEKKER--IITGSR-----IHAYIKISEGCNQACSFCSIPSFKGKLKSRSIE 168

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAW-RGKGLDGEKCTFSDLLYSLSEIKGLVR-LRYT 266
            V+ E + L   G  + T + Q+ +++ R  G+   K     L+ ++ E +GL R  R  
Sbjct: 169 SVLKEIQNLSQRGYQDFTFIAQDSSSYLRDHGV---KDGLVQLIGAIEE-QGLARSARML 224

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
             +P   +  LI    D  +   Y  +P+Q    ++LK M R  +   + +++  +R+V 
Sbjct: 225 YLYPSTTTPHLIAVIRDSKIFQNYFDMPIQHIHAKMLKRMKRGVSKERHIELLHAMRAV- 283

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           PD  + S  I+G PGE++++F      ++   + +   F +S   G+    M E++   +
Sbjct: 284 PDSFVRSTIIIGHPGESEEEFAELCSFLEDFVFDRLNVFAFSSEEGSAADLMEEKIPTKI 343

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419
             +R+  +++ L++QQ    ++ +G+  EVL+E
Sbjct: 344 INQRIKKIEQILKKQQKRILNSMIGKQYEVLLE 376


>gi|325002548|ref|ZP_08123660.1| hypothetical protein PseP1_27467 [Pseudonocardia sp. P1]
          Length = 501

 Score =  139 bits (351), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 129/486 (26%), Positives = 204/486 (41%), Gaps = 67/486 (13%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDA-DLIVLNTCHIREKAAEKVY 81
            P+R  + + GC  N  DS  +       G+E V++   + D+I++NTC   E+A +   
Sbjct: 7   APRRAALLTLGCARNEVDSEELAGRLTGSGWELVDAEGGSPDVILVNTCGFVEQAKKDSI 66

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPE--- 138
             +     L  S +       VV  GC+A+  G E+    P  + V+G   Y  L E   
Sbjct: 67  DTV-----LAASDVARPAGAKVVAVGCLAERYGAELAADLPEADAVLGFDAYPELAERLG 121

Query: 139 ------------------LLERARFGKRVVDTDYSV--EDKFERLSIVDGGYNRKR---G 175
                             LL  +   +     D SV   D    L+    G  R R   G
Sbjct: 122 DVLGGHAPAPHVPVDRRTLLPISPVERPAATADVSVPGHDWVPDLA----GIARTRLAGG 177

Query: 176 VTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW 235
             A L +  GCD+ C FC +P  RG  +SR  + V+ EA  L   GV E+ L+ +N  ++
Sbjct: 178 PVASLKLASGCDRRCAFCAIPSFRGSFVSRPPADVLGEAAWLASQGVRELVLVSENSTSY 237

Query: 236 RGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPV 295
            GK L G      DLL  L    G+ R+R +   P ++   L+ A      + PY  L  
Sbjct: 238 -GKDLPGGTRALVDLLPRLGSTPGVERVRVSYLQPAELRPDLLAAIATTPGIAPYFDLSF 296

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA-----T 350
           Q  S  +L+ M R  +  ++  +  RIR + P+  I S+ IVGFPGET++D        T
Sbjct: 297 QHASATVLRRMRRFGSRTDFLDLCTRIRELAPEAGIRSNVIVGFPGETEEDLAELEAFLT 356

Query: 351 MDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE---NVKAERLLCLQKKLREQQVSFND 407
              +D +G      F YS   GT       +VD      +  R+  L  +L EQ+     
Sbjct: 357 GARLDAVGV-----FGYSDEDGTEAEGYDGKVDPAEVQARVARISALADELMEQRAEER- 410

Query: 408 ACVGQIIEVLIEKHGKE-----KGKLVGRSPWL--QSVVLNSKNHN-------IGDIIKV 453
             +G  + VL+E+   +      G+   + P    +S V+ + +          GD+++ 
Sbjct: 411 --IGTEVVVLVERTDADDEDDCAGRAAHQGPDADGESYVVAAADDGPDPSSLRPGDLVRC 468

Query: 454 RITDVK 459
           R+ D +
Sbjct: 469 RVLDTE 474


>gi|150007589|ref|YP_001302332.1| putative Fe-S oxidoreductase [Parabacteroides distasonis ATCC 8503]
 gi|238066427|sp|A6LAJ6|RIMO_PARD8 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|149936013|gb|ABR42710.1| putative Fe-S oxidoreductase [Parabacteroides distasonis ATCC 8503]
          Length = 432

 Score =  139 bits (351), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 120/449 (26%), Positives = 216/449 (48%), Gaps = 38/449 (8%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGY--ERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           + GC  N+ DS ++   F + GY  E      + +++V+NTC     A E+  + +  + 
Sbjct: 10  TLGCSKNLVDSEQLMRQFVANGYTVEHDPHKINGEIVVVNTCGFIGDAQEESINMILELG 69

Query: 89  NLKNS-RIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147
             K   RI   G L V+  GC+++   +++ +  P V+   G    +   EL+  +  GK
Sbjct: 70  EQKQKGRI---GKLFVM--GCLSERFLKDLEKELPEVDRFYGK---FNWKELI--SDLGK 119

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
                 Y  E   +R+      Y       A++ I EGC++ C++C +P   G   SR +
Sbjct: 120 -----SYHQELATDRVLTTPRHY-------AYVKIGEGCNRTCSYCSIPIITGAYQSRPM 167

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK-CTFSDLLYSLSEIKGLVRLRYT 266
            ++VDE R L+  GV E  ++ Q++  +   GLD  K     +L+  +S+I G+  +R  
Sbjct: 168 DEIVDEVRGLVAQGVKEFQMIAQDLTFY---GLDRYKRMALPELVERVSDIPGVEWIRLH 224

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
             +P      L+    + D +  Y+ + +Q  SD +LK M R  T  E  ++++R+R   
Sbjct: 225 YGYPSHFPYDLLPVMRERDNVCKYMDIALQHISDPMLKMMRRNITKAETYELLERMRREV 284

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG-SNMLEQVDEN 385
           P I + +  +VG PGET+ DF   +  V  I + +  +F YS   GT    +  +++ + 
Sbjct: 285 PGIHLRTTLMVGHPGETEQDFEELIRFVKDIRFERMGAFAYSHEEGTYAYQHYKDEIPQE 344

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVVLN 441
           VK +RL  L +         N + VGQ   V++++  +E+   VGR    SP +   +L 
Sbjct: 345 VKQDRLDYLMRVQEGISADVNASKVGQTFRVIVDR--EEEDFYVGRTQYDSPEVDPEILI 402

Query: 442 SKNHNI--GDIIKVRITDVKISTLYGELV 468
           SK+  +  G   +V++ D +   LYG+++
Sbjct: 403 SKDTPLSPGSFYQVKVIDAQAFDLYGKVL 431


>gi|149201229|ref|ZP_01878204.1| RNA modification enzyme, MiaB-family protein [Roseovarius sp.
           TM1035]
 gi|149145562|gb|EDM33588.1| RNA modification enzyme, MiaB-family protein [Roseovarius sp.
           TM1035]
          Length = 480

 Score =  139 bits (350), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 124/450 (27%), Positives = 201/450 (44%), Gaps = 39/450 (8%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC   + DS R+     ++GY        AD +++NTC   + A  +    +G     
Sbjct: 55  SLGCPKALVDSERILTRLRAEGYGISPDYTGADAVIVNTCGFLDSAKAESLEAIGEALA- 113

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
           +N R        V+V GC+  AE E I    P V  V GP  Y ++ + +  A       
Sbjct: 114 ENGR--------VIVTGCLG-AEPEYITGVHPRVLAVTGPHQYEQVLDAVHLAV------ 158

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
                  D F  L    G     R  + +L I EGC+  C FC++P  RG   SR    V
Sbjct: 159 ---PPSPDPFIDLLPASGVSLTPRHYS-YLKISEGCNHKCKFCIIPDMRGKLQSRPAHAV 214

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLD-------GEKCTFSDLLYSLSEIKGLVRL 263
           + EA KL+++GV E+ ++ Q+ +A+   G+D       G +   +DL   L  +   VRL
Sbjct: 215 IREAAKLVESGVKELLVISQDTSAY---GVDIRHAEERGHRAHITDLARDLGGLGAWVRL 271

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
            Y   +P       + A G   +++PYL +P Q     +L+ M R   A +    I   R
Sbjct: 272 HYVYPYPHVRDLIPLMAEG---LVLPYLDIPFQHAHPEVLRRMARPAAAAKTLDEIAAWR 328

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              P+IA+ S FIVG+PGET+ +F+  +D +D+    +   F+Y    G   + + + V 
Sbjct: 329 RDCPEIALRSTFIVGYPGETEAEFQTLLDWLDEAQLDRVGCFQYENVAGARSNALPDHVA 388

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVL---IEKHGKEKGKLVGRSPWLQSVVL 440
             VK ER     +K +    +   A VGQ +EV+   I+  G    +    +P +   + 
Sbjct: 389 AEVKQERWDRFMEKAQAISEAKLAAKVGQRMEVIVDEIDADGIATCRTKADAPEIDGNLF 448

Query: 441 ---NSKNHNIGDIIKVRITDVKISTLYGEL 467
               ++  ++GDI+ V + +     L+G L
Sbjct: 449 IDEGTEEVSVGDIVSVVVDEAGEYDLWGRL 478


>gi|313886493|ref|ZP_07820209.1| ribosomal protein S12 methylthiotransferase RimO [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|312924039|gb|EFR34832.1| ribosomal protein S12 methylthiotransferase RimO [Porphyromonas
           asaccharolytica PR426713P-I]
          Length = 443

 Score =  139 bits (350), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 121/450 (26%), Positives = 209/450 (46%), Gaps = 34/450 (7%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDD--ADLIVLNTCHIREKAAEK 79
           ++  +  V S GC  N+ DS  +       GY   +  D+   ++ V+NTC   + A E+
Sbjct: 1   MIANQIDVISLGCSKNLVDSDALMRRLAQYGYTLRHDPDELTGEIAVVNTCGFIQAAQEE 60

Query: 80  VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL 139
             + +  +   K    KEG    + V GC+ +   EE+    P V+ + G   + +L   
Sbjct: 61  SINLILSLIEAK----KEGRIRAIYVMGCLGERFREELTAELPEVDKIYGKYDWKQLITD 116

Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           L  A          Y         S+    Y       +++ I EGCD+ C++C +P   
Sbjct: 117 LGPALSADDATPLSYRTPPP----SVTPQHY-------SYIKISEGCDRTCSYCAIPLIT 165

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G   SR + ++V E  K +  G  E  ++ Q+ + + G  L  E+   + LL  L++++G
Sbjct: 166 GRHHSRPMEEIVREIEKRVATGCREFQIIAQD-STYYGVDLYQEQA-IATLLDRLAQVEG 223

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           +  LR   ++P      L+      D +  YL L +Q  S+ +L+ M R+ T  E   ++
Sbjct: 224 VHWLRLHYAYPNHFPLELLDVMAKHDNICKYLDLALQHSSNHMLQLMRRQITREETIVLL 283

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG-SNM 378
           +RIR   P IA+ +  +VG PGETD+DF   +D V ++ + +  +F+YS   GT    + 
Sbjct: 284 ERIRKQVPGIALRTTMMVGHPGETDEDFADLLDFVSQMRFERLGAFQYSHEEGTYAYKHY 343

Query: 379 LEQVDENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR---- 431
            + V   VK ER   L+ LQ+ +     S N   VG  +EV++++  +E+   VGR    
Sbjct: 344 QDDVPPEVKQERYDALMSLQETI---STSINSRKVGTTLEVVVDR--EEEDYYVGRTQYD 398

Query: 432 SPWLQSVVLNSKNH--NIGDIIKVRITDVK 459
           SP +   V+ S +    +G   +  IT V+
Sbjct: 399 SPEVDGEVILSSDSPLRVGSFYQAEITGVE 428


>gi|292656724|ref|YP_003536621.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haloferax volcanii
           DS2]
 gi|291371073|gb|ADE03300.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haloferax volcanii
           DS2]
          Length = 429

 Score =  139 bits (350), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 118/458 (25%), Positives = 205/458 (44%), Gaps = 58/458 (12%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R+ +++YGC  N  +S  +E      G+ RV+  ++AD+ ++NTC + EK      + L 
Sbjct: 3   RYHIETYGCTSNRGESRAIESALRDAGHYRVDGPEEADVAIMNTCTVVEKTER---NMLR 59

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGE---------EILRRSPIVNVVVGPQTYYRL 136
           R + L      E  DL  ++ GC+A A+G          +IL    +   V   +     
Sbjct: 60  RAKELA----AETADL--IITGCMALAQGNDFREEGIDAQILHWDDVPAAVTNGECPTPG 113

Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
           P +       + V+D                       GV   L I  GC   C++C+  
Sbjct: 114 PGV-------EPVLD-----------------------GVVGILPIARGCMSNCSYCITK 143

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-S 255
           +  G   S S+ + V++AR L+  G  E+ + GQ+   +   G D       +LL  + +
Sbjct: 144 FATGRVDSPSVDENVEKARALVHAGAKELRITGQDTGVY---GWDNGDRKLPELLDRICT 200

Query: 256 EIKGLVRLRYTTSHP---RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
           EI G  R+R   ++P     + D L       D L  ++H PVQSGSD +L+ M R+H  
Sbjct: 201 EIDGEFRVRVGMANPGGVHGIRDELAAVFARHDKLYNFIHAPVQSGSDEVLEHMRRQHRV 260

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
            ++R+I++          +S+DFIVG+P ETD D   +M+L+ ++   +    ++S R G
Sbjct: 261 DKFREIVETFDRELDYWTLSTDFIVGYPTETDADHERSMELLREVRPEKVNVTRFSKRPG 320

Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS 432
           T  ++ L+ +   +K ER   + +   +   +  D  VG   +VL+ + G          
Sbjct: 321 TDAAD-LKGLGGTLKKERSKEMSEAKMDIVAAAYDEMVGTERDVLVVEEGTGDSVKCRDE 379

Query: 433 PWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468
            + Q +V N+  H +  GD  +V +T  +    + E V
Sbjct: 380 AYRQIIVQNATEHGLEPGDFARVTVTAHQTVYAFAEPV 417


>gi|99080490|ref|YP_612644.1| hypothetical protein TM1040_0649 [Ruegeria sp. TM1040]
 gi|123252523|sp|Q1GIY4|RIMO_SILST RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|99036770|gb|ABF63382.1| hypothetical protein TM1040_0649 [Ruegeria sp. TM1040]
          Length = 467

 Score =  139 bits (350), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 127/464 (27%), Positives = 207/464 (44%), Gaps = 57/464 (12%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC   + DS R+     ++GY        AD +++NTC   + A  +    +G     
Sbjct: 33  SLGCPKALVDSERILTRLRAEGYGISADYAGADAVIVNTCGFLDSAKAESLEAIGEA--- 89

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               +KE G   V+V GC+  AE + I    P +  V GP  Y             ++V+
Sbjct: 90  ----LKENGK--VIVTGCLG-AEPDYIREHHPRILAVTGPHQY-------------EQVL 129

Query: 151 DTDYSV----EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           D  ++      D F  L    G     R  + +L I EGC+  C FC++P  RG   SR 
Sbjct: 130 DAVHAAVPPSPDPFVDLLPATGVSLTPRHFS-YLKISEGCNHKCKFCIIPDMRGKLASRP 188

Query: 207 LSQVVDEARKLIDNGVCEITLLGQN-----------VNAWRGKGLDGE-KCTFSDLLYSL 254
              V+ EA KL+  GV E+ ++ Q+           VN W+    DGE +   +DL  +L
Sbjct: 189 AHAVLREAEKLVTAGVRELLVISQDTSAYGLDRKYDVNPWK----DGEVRSHITDLSRAL 244

Query: 255 SEIKG----LVRLRYTTSHPRDMSDCLIKAHGDLD-VLMPYLHLPVQSGSDRILKSMNRR 309
            E+       VRL Y   +P      LI    D +  ++PYL +P Q     +L+ M R 
Sbjct: 245 GELAPADQLWVRLHYVYPYPHVRE--LIPLMADPENAVLPYLDIPFQHAHPDVLRRMARP 302

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369
             A +    I   R++ PDI + S FIVG+PGET+ +F+  +D +D+    +   FKY  
Sbjct: 303 AAAAKTLDEIRAWRAICPDITLRSTFIVGYPGETEAEFQHLLDWMDEAQLDRVGCFKYEN 362

Query: 370 RLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVL---IEKHGKEKG 426
             G   +++ + V E VK  R     +K +    +   + VGQ ++V+   I++ G    
Sbjct: 363 VDGARSNDLPDHVAEEVKQNRWERFMEKAQAISEAKLASKVGQTLQVIVDEIDEDGIATC 422

Query: 427 KLVGRSPWLQSVVL---NSKNHNIGDIIKVRITDVKISTLYGEL 467
           +    +P +   +     + N ++GD++ V + +     L+G L
Sbjct: 423 RTKADAPEIDGNLFIDEGTANLSVGDLVTVEVDEAGEYDLWGAL 466


>gi|298528465|ref|ZP_07015869.1| RNA modification enzyme, MiaB family [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298512117|gb|EFI36019.1| RNA modification enzyme, MiaB family [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 429

 Score =  139 bits (350), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 111/390 (28%), Positives = 186/390 (47%), Gaps = 39/390 (10%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           FF+ + GC++N Y+S  + +    QG    +  + A  I +N+C +  +A + +   L R
Sbjct: 6   FFMTTLGCRVNQYESQAISEALQRQGLVPADGPEQAGYIYVNSCAVTARAVKDLKKTLRR 65

Query: 87  IR-NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           +R     +RI        +V GC AQ   EE+     +  VV  PQ+  R   +L     
Sbjct: 66  LRVQAPQARI--------IVTGCAAQIFEEELGALEEVDLVV--PQS--RKTSILASPFP 113

Query: 146 GKRVVDT--DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
                D   DY +   F           R R V   + +Q+GC + C++C+VP +RG  +
Sbjct: 114 DPHAGDPGLDYWITSYF-----------RARPV---VKVQDGCSRGCSYCIVPASRGAPV 159

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-----SEIK 258
           SR    V+ E + L++ G  EI + G N+  + G  LD  +  F DL+  L     SE +
Sbjct: 160 SRPPEVVLREIQGLLNRGYREIVISGINLGMY-GVDLDARE-DFWDLICYLEKNLASEWE 217

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
             +RLR ++  P  +    I       ++ P+ HL +QSG   +L  M R H  +  + I
Sbjct: 218 DRMRLRLSSLDPAMLDSRGIDIISSSVLICPHFHLSLQSGCTWVLTRMGRDHY-HPAKAI 276

Query: 319 --IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
             ++R+    P  ++ +DF+VGFPGE  D F  T+ L + +  +    F YSPR GT  +
Sbjct: 277 FFVERLERTIPFYSMGADFLVGFPGEKPDYFERTLKLTEALPLSYGHVFTYSPRPGTRAA 336

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFN 406
              +Q+ ++VK +R   L++ L+ ++  F 
Sbjct: 337 RWPDQIAQHVKEKRARELKEVLKHKRQRFT 366


>gi|237746819|ref|ZP_04577299.1| fe-s oxidoreductase [Oxalobacter formigenes HOxBLS]
 gi|229378170|gb|EEO28261.1| fe-s oxidoreductase [Oxalobacter formigenes HOxBLS]
          Length = 468

 Score =  139 bits (350), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 127/467 (27%), Positives = 208/467 (44%), Gaps = 56/467 (11%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC   + DS R+     ++GYE   +  DA L+++NTC   + A  +    +      
Sbjct: 11  SLGCPKALVDSERILTRLRAEGYETAETYKDAGLVIVNTCGFIDAAEAESLEAIAEA--- 67

Query: 91  KNSRIKEGGDLLVVVAGCV-AQAEGEE---ILRRSPIVNVVVGPQTYYRLPELLER--AR 144
               ++E G   V+V GC+ A+ +G     I    P V  V GP +  ++ + + R   R
Sbjct: 68  ----LEENGK--VIVTGCLGAKKDGAGAGFIKSVLPKVLEVTGPDSVQQVMDAVHRHLPR 121

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
             +  VD             +   G        A+L I EGC   CTFC++P  RG  IS
Sbjct: 122 PHEPFVDL------------VPPQGIKLTPRHYAYLKISEGCSHHCTFCIIPDLRGSLIS 169

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYS 253
            S+ +V+DEA  L  +GV E+ ++ Q+  A           W G+ +       ++ L  
Sbjct: 170 YSVGKVLDEAEMLFQSGVKELLVISQDTGAYGLDIQFRTGFWNGRPVRTHVTQLTEQLGR 229

Query: 254 LSEIKG-LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
           L+   G  VRL Y   +P    D L+    +  VL PYL +P Q     +LK M R  + 
Sbjct: 230 LARKYGAWVRLHYIYPYPH--IDDLLPLMNEGGVL-PYLDVPFQHAHPDVLKRMRRPASG 286

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
            ++ + I   R + PD+ I S FI GFPGET+ +F   +D + +    +   F YSP  G
Sbjct: 287 EKHLERIQTWRKMCPDMTIRSTFIAGFPGETEAEFTYLLDFLKEARIDRLGCFPYSPVEG 346

Query: 373 TPGSNMLEQVD---ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK--HGKEKGK 427
              +++   V       +  RL+ LQ+ +  +++      +G+ + VL+++   G   G+
Sbjct: 347 AKANDLPGAVPEEIREERRARLMQLQEAISYERLQEK---IGKTLRVLVDETIRGGALGR 403

Query: 428 LVGRSPWLQSVVLNSKNHNI------GDIIKVRITDVKISTLYGELV 468
               +P +  VV   K   +      G+ + V I D     L+GE+V
Sbjct: 404 SSADAPEIDGVVYVRKPKGMRRKLAPGEFVDVLIHDADAHDLWGEMV 450


>gi|302537296|ref|ZP_07289638.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Streptomyces sp. C]
 gi|302446191|gb|EFL18007.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Streptomyces sp. C]
          Length = 500

 Score =  139 bits (350), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 127/444 (28%), Positives = 192/444 (43%), Gaps = 60/444 (13%)

Query: 23  VPQRFFVK--SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKV 80
           +P+R  V   + GC  N  DS  +     + G+E V    DAD+ V+NTC   E A +  
Sbjct: 1   MPERRTVALVTLGCARNEVDSEELAGRLAADGWELVEDAADADVAVVNTCGFVEAAKKDS 60

Query: 81  YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140
              L    +LK+     G    VV  GC+A+  G+E+    P  + V+G   Y  +   L
Sbjct: 61  VDALLEANDLKD----HGKTQAVVAVGCMAERYGKELAEALPEADGVLGFDDYADISNRL 116

Query: 141 ERARFGKRVVDTDYSVEDKFERLSI----------------------------VDGGYNR 172
           +    G  V    ++  D+ + L I                            +  G   
Sbjct: 117 QTILSGGSV--EAHTPRDRRKLLPISPAERQSADVALPGHAQAAEEPAPAPADLPDGLAP 174

Query: 173 KRGVTAFL------------TIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN 220
             G  A L             +  GCD+ C+FC +P  RG  ISR  S V+ E R L + 
Sbjct: 175 ASGPRAPLRRRLDKSPVASVKLASGCDRRCSFCAIPSFRGSFISRRPSDVLGETRWLAEQ 234

Query: 221 GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKA 280
           GV E+ L+ +N N   GK L G+      LL  L+ + G+ R+R +   P +M   LI  
Sbjct: 235 GVKEVMLVSEN-NTSYGKDL-GDIRLLETLLPELAAVDGIERVRVSYLQPAEMRPGLIDV 292

Query: 281 HGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFP 340
                 ++PY  L  Q  +  +L++M R      + +++D IRS  P   + S+FIVGFP
Sbjct: 293 LTSTPKVVPYFDLSFQHSAPDVLRAMRRFGDTDRFLELLDTIRSKAPQAGVRSNFIVGFP 352

Query: 341 GETDDDFRA-----TMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQ 395
           GE + DF       T   +D IG      F YS   GT  +    ++DE+  AERL  +Q
Sbjct: 353 GEKESDFAELERFLTHARLDAIGV-----FGYSDEDGTEAAGYEGKLDEDTIAERLAHMQ 407

Query: 396 KKLREQQVSFNDACVGQIIEVLIE 419
           +   E      +  +G+ +EVL+E
Sbjct: 408 RLAEELTSQRAEERIGETLEVLVE 431


>gi|296269078|ref|YP_003651710.1| MiaB-like tRNA modifying enzyme YliG [Thermobispora bispora DSM
           43833]
 gi|296091865|gb|ADG87817.1| MiaB-like tRNA modifying enzyme YliG [Thermobispora bispora DSM
           43833]
          Length = 473

 Score =  139 bits (349), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 123/443 (27%), Positives = 193/443 (43%), Gaps = 48/443 (10%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA-EKVYSFLGRIRN 89
           + GC  N  DS  +     + G+    S DD D+IV+NTC   + A  E + + L     
Sbjct: 11  TLGCARNEVDSEELAARLEAAGWRL--SDDDPDVIVVNTCGFIDSAKKESIDTLLA---- 64

Query: 90  LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVV-------VG------------- 129
             +S  K      VV AGC+A+  G+E+    P   V+       +G             
Sbjct: 65  AADSGAK------VVAAGCLAERYGKELAEALPEATVISFDDYAEIGDRLDDVLAGRPLR 118

Query: 130 ---PQTYYRLPELLERARFGKRVVDTDYSV---EDKFERLSIVDGGYN-RKR---GVTAF 179
              P+   RL  +    R   R     +     E   E ++   G    RKR   G  A 
Sbjct: 119 PHTPRDRRRLLPITPVDRSAARARIPGHGARADEPLPEGVAPASGPRTLRKRLTGGPVAP 178

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
           + +  GCD+ C FC +P  RG  +SR    ++ EAR L + GV EI L+ +N  ++ GK 
Sbjct: 179 IKLASGCDRRCAFCAIPAFRGAYVSRPPEDLIAEARWLAEQGVKEIVLVSENSTSY-GKD 237

Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
           L G+      LL  L+  +G+ R+R     P ++   LI+       + PY  L  Q  S
Sbjct: 238 L-GDLRALERLLPKLAATEGIERVRVNYLQPAELRPSLIEMLTSTPGVAPYFDLSFQHAS 296

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
             +L+ M R   A  +  +++RIR   P+  I S+FIVGFPGET++DF      +++   
Sbjct: 297 GPLLRRMRRFGDARRFLDLLERIRERAPEAGIRSNFIVGFPGETEEDFAELKGFLEEARL 356

Query: 360 AQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419
                F YS   GT      +++D++   ER+  L     E      +  +G  +E+LIE
Sbjct: 357 DVIGVFGYSDEEGTEAYGFPDKLDQDTIDERVAELSALADELMAQRAEERIGTELEILIE 416

Query: 420 K---HGKEKGKLVGRSPWLQSVV 439
           +    G  +G+   + P +   V
Sbjct: 417 EDLGDGGYEGRAAHQGPEVDGTV 439


>gi|307329206|ref|ZP_07608371.1| RNA modification enzyme, MiaB family [Streptomyces violaceusniger
           Tu 4113]
 gi|306885105|gb|EFN16126.1| RNA modification enzyme, MiaB family [Streptomyces violaceusniger
           Tu 4113]
          Length = 498

 Score =  139 bits (349), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 117/405 (28%), Positives = 175/405 (43%), Gaps = 42/405 (10%)

Query: 23  VPQRFFVK--SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKV 80
           +P+R  V   + GC  N  DS  +     + G+E V    +AD+ V+NTC   E A +  
Sbjct: 1   MPERRTVALVTLGCARNEVDSEELAGRLAADGWELVEEATEADVAVVNTCGFVEAAKKDS 60

Query: 81  YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140
              L    +LK+     G    VV  GC+A+  G+E+    P  + V+G   Y  + + L
Sbjct: 61  VDALLEANDLKD----HGRTQAVVAVGCMAERYGKELAEALPEADGVLGFDDYADISDRL 116

Query: 141 --------------------------ERARFGKRVVD---TDYSVEDKFERLSIVDGGYN 171
                                     ER       +     D + ED  E ++   G   
Sbjct: 117 RTILAGGVHASHTPRDRRKLLPISPAERQDAASVALPGHAQDTAPEDLPEGVAPASGPRA 176

Query: 172 --RKR---GVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEIT 226
             R+R      A + +  GCD+ C+FC +P  RG  ISR  S V+ E R L + GV EI 
Sbjct: 177 PLRRRLDSSPVASVKLASGCDRRCSFCAIPSFRGSFISRRPSDVLGETRWLAEQGVKEIM 236

Query: 227 LLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV 286
           L+ +N N   GK L G+      LL  L+ + G+ R+R +   P +M   LI      + 
Sbjct: 237 LVSEN-NTSYGKDL-GDIRLLETLLPELAAVDGIERIRVSYLQPAEMRPGLIDVLTSTEK 294

Query: 287 LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDD 346
           + PY  L  Q  +  +L++M R      + ++++ IR   P     S+FIVGFPGET+DD
Sbjct: 295 VAPYFDLSFQHSAPGVLRAMRRFGDTDRFLELLETIRGKAPQAGARSNFIVGFPGETEDD 354

Query: 347 FRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERL 391
                  + +        F YS   GT  +    +VD  V AERL
Sbjct: 355 LAELERFLSEARLDAIGVFGYSDEDGTEAAGYENKVDPEVVAERL 399


>gi|78777931|ref|YP_394246.1| hypothetical protein Suden_1737 [Sulfurimonas denitrificans DSM
           1251]
 gi|123768589|sp|Q30PS0|RIMO_SULDN RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|78498471|gb|ABB45011.1| conserved hypothetical protein [Sulfurimonas denitrificans DSM
           1251]
          Length = 439

 Score =  138 bits (348), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 113/449 (25%), Positives = 212/449 (47%), Gaps = 41/449 (9%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
            +  + S GC  N+ D+  M  M   Q +E  ++  DAD+I++NTC   + A ++    +
Sbjct: 3   NKLHIVSLGCTKNLVDTEVM--MGKLQNFELTDNQSDADVIIVNTCGFIDAAKQES---I 57

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL--ER 142
             + NL ++R KE  D ++V+AGC+++   EE+ +  P V++  G   Y ++ ELL  ++
Sbjct: 58  NTVLNLHDAR-KE--DSVLVMAGCLSERYKEELAKDMPEVDIFTGVGDYDKIDELLVEKK 114

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT--AFLTIQEGCDKFCTFCVVPYTRG 200
           +RF               E + ++DG      G T  A++ + EGC++ C+FC +P  +G
Sbjct: 115 SRFS--------------EAVYLIDGAERVVTGSTYHAYIKLSEGCNQTCSFCAIPSFKG 160

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-RGKGLDGEKCTFSDLLYSLSEIKG 259
              SR+L  +  E   L+  G  + + + Q+ +++ R K +   K   S L+  +  I+G
Sbjct: 161 KLNSRTLDSIAKEVESLVKKGYWDFSFVSQDSSSYLRDKNV---KDGLSLLIQRVELIEG 217

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           +   R    +P   S  L+K     ++   Y  +P+Q  +D +L+ M R     +  +++
Sbjct: 218 VKSARILYLYPSTTSMALLKNIAKSEIFHNYFDMPIQHINDDMLRIMKRGFGKKQTLELL 277

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
           + ++S+ P+  I + FIVG PGE+ + F          G+ +   F YS    TP   M 
Sbjct: 278 EFMKSL-PNSFIRTSFIVGHPGESQEMFDEMCKFASSFGFERINVFAYSDEETTPAHEMS 336

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQS-- 437
           +++   V  +R   L K   +   +     +G+   ++I+K   E   L+     L +  
Sbjct: 337 DKIAAKVINKRASILGKIAADVMQASLKKEIGKETLLVIDKESDEHEYLLSARKILWAPD 396

Query: 438 ----VVLNSKNH----NIGDIIKVRITDV 458
               + +N ++     N G I    ITD+
Sbjct: 397 IDGEIYVNDRSGEEELNFGAIYNAEITDM 425


>gi|121605338|ref|YP_982667.1| ribosomal protein S12 methylthiotransferase [Polaromonas
           naphthalenivorans CJ2]
 gi|238066437|sp|A1VQ18|RIMO_POLNA RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|120594307|gb|ABM37746.1| SSU ribosomal protein S12P methylthiotransferase [Polaromonas
           naphthalenivorans CJ2]
          Length = 461

 Score =  138 bits (348), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 124/475 (26%), Positives = 204/475 (42%), Gaps = 73/475 (15%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R  + S GC   + DS  +     ++GY+   + + ADL+++NTC   + A  +    +G
Sbjct: 10  RIGMVSLGCPKALTDSELILTRLSAEGYQTSKTFEGADLVIVNTCGFIDDAVRESLDTIG 69

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEE----ILRRSPIVNVVVGPQTYYRLPELLE 141
                            V+V GC+    G+     + +  P V  V GP           
Sbjct: 70  EALAANGK---------VIVTGCLGAKSGDNGSNLVRQMHPSVLAVTGPHAT-------- 112

Query: 142 RARFGKRVVDTDY----SVEDKFERL---SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCV 194
                + V+D  +       D F  L   +    G        A+L I EGC+  CTFC+
Sbjct: 113 -----QEVMDAVHLNLPKPHDPFVDLVPNAFGIAGIKLTPRHYAYLKISEGCNHRCTFCI 167

Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGE 243
           +P  RG  +SR +  V+ EAR L + GV E+ ++ Q+ +A           W GK +   
Sbjct: 168 IPSMRGDLVSRPVGDVLSEARALFEGGVKELLVISQDTSAYGVDVKYRTGFWDGKPV--- 224

Query: 244 KCTFSDLLYSLSEIKG----LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
           K    +L+ +L EI       VRL Y   +P       + A G +   +PYL +P+Q   
Sbjct: 225 KTRMLELVQALGEIAAPFGAWVRLHYVYPYPSVDEILPLMATGKV---LPYLDVPLQHSH 281

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
             +L+ M R  +  +  + I R R + P+I I S FI GFPGET+ +F   +D + +   
Sbjct: 282 PDVLRRMKRPASGEKNLERISRWREMCPEIVIRSTFIAGFPGETEAEFEHLLDFMREAKI 341

Query: 360 AQAFSFKYSPRLGTPGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEV 416
            +A  F YS   G   +++   +   V+ E   R + + + +  Q++      VG  ++V
Sbjct: 342 DRAGCFAYSAVQGATANDIPGMLPLGVREERRARFMAVAEAVSSQKLQQR---VGATMQV 398

Query: 417 LIEKHGKEKGKL--VGRS----PWLQSVV------LNSKNHNIGDIIKVRITDVK 459
           L++ H    G+    GRS    P +  VV        SK   +G+  + RI  V+
Sbjct: 399 LVD-HAPALGRKGGTGRSYADAPEIDGVVKLLPPEKISKTMKVGEFTRARIVGVQ 452


>gi|283954557|ref|ZP_06372076.1| hypothetical protein C414_000230057 [Campylobacter jejuni subsp.
           jejuni 414]
 gi|283793961|gb|EFC32711.1| hypothetical protein C414_000230057 [Campylobacter jejuni subsp.
           jejuni 414]
          Length = 417

 Score =  138 bits (348), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 104/396 (26%), Positives = 189/396 (47%), Gaps = 54/396 (13%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + ++ F K++GC+ N+YD+  ++   + + YE +N+ D A +IV+N+C +   A   + S
Sbjct: 1   MKEKVFFKTFGCRTNIYDTELLKS--YVKDYEIINNEDKAQIIVINSCTVTNGADSGIKS 58

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPI-----------VNVVVGPQ 131
           ++       N+  K+G  + V++ GC A ++G+E L +  +           +N  +G +
Sbjct: 59  YI-------NTMQKKG--IKVILTGCGAVSKGKEFLDKKQVFGVLGASNKDKINEFLGAK 109

Query: 132 T-YYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190
           T +Y L  L          +D D   E               +    AF+ IQEGCD  C
Sbjct: 110 TSFYELGNL--------NFIDKDIVCE--------------YENHTKAFVKIQEGCDFAC 147

Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDL 250
           ++C++P  RG   S     ++ +   L  NG  EI L G N+ ++   GL     T   L
Sbjct: 148 SYCIIPSVRGKSRSVDEKTLLKQVEILGANGYSEIVLTGTNIGSY---GLKN-GTTLGKL 203

Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR- 309
           L  + +I G+ R+R  +  P  + +  ++   D   L  +LH+ +Q  S+++L+ M RR 
Sbjct: 204 LQKMGQISGIKRIRLGSLEPAQIDESFLEIL-DEAWLERHLHIALQHTSEKMLRIMRRRS 262

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369
           HT  + R + + I S     A+ +DFIVG PGE+ + +   +    +       +F +SP
Sbjct: 263 HTDNDLR-LFNIIAS--KGYALGTDFIVGHPGESVEIWEEALKNFKEFSLTHIHAFIFSP 319

Query: 370 RLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSF 405
           R  T  + M + ++  +  ERL  L+  + +   +F
Sbjct: 320 RNNTHSATMKDVINGTLAKERLNVLKSIVEKNNYNF 355


>gi|268679888|ref|YP_003304319.1| MiaB-like tRNA modifying enzyme [Sulfurospirillum deleyianum DSM
           6946]
 gi|268617919|gb|ACZ12284.1| MiaB-like tRNA modifying enzyme [Sulfurospirillum deleyianum DSM
           6946]
          Length = 414

 Score =  138 bits (348), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 104/445 (23%), Positives = 208/445 (46%), Gaps = 34/445 (7%)

Query: 25  QRFFVKSYGCQMNVYDS-LRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ F K++GC+ N+YD+ + ME++   + +E      +AD++V+N+C +   A   V S+
Sbjct: 2   KKVFFKTFGCRTNIYDTQVMMENL---KDFEVTEHEAEADIVVVNSCTVTNGADTGVRSY 58

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +     L            VV+AGC A ++GE +  ++ +  V+ G      +  LL  A
Sbjct: 59  INHASKLGKK---------VVLAGCGAMSKGEALFAQNRVFGVL-GHSEKRSINTLLHNA 108

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
                     + + D       +   Y  K    AF+ IQEGC+  C++C++P+ RG   
Sbjct: 109 -------TPFFQIGDLTSLDETIVHEYTGK--TKAFIKIQEGCNFRCSYCIIPFVRGNAR 159

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-RGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           S+   +++++  KL  NG  E  L G N+ ++ + KG      +   L+  L  I+G+ R
Sbjct: 160 SQDEQKIIEQVEKLALNGYGEFVLTGTNIGSYGKDKG-----SSLGRLVQRLGAIRGVRR 214

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R  +  P  + +   +   +   L  +LH+ +Q  S+ +L+ M RR+      ++   +
Sbjct: 215 IRLGSIEPVQIDESFREILNE-PWLERHLHIALQHTSEAMLQLMRRRNNVKRDLELFMEL 273

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
                  A+ +DFI G PGE++  +      +++       +F YS R GTP S M  ++
Sbjct: 274 GE--KGFALGTDFITGHPGESEAIWEEAYSTLERFPLTHIHAFTYSKRDGTPSSTMKPEI 331

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
             ++   R   ++  +  +  +F +      +EVL+E++  ++   VG   +   V++ S
Sbjct: 332 KGDIAKIRHQQVEALIERKNRAFREKNHTTPLEVLVEEY--KENFFVGYDQFYNKVMIQS 389

Query: 443 KNHNIGDIIKVRITDVKISTLYGEL 467
           +   + + +K+   D++    Y   
Sbjct: 390 ERDLLKEWVKLESYDIRQEANYAHF 414


>gi|119716546|ref|YP_923511.1| MiaB-like tRNA modifying enzyme YliG [Nocardioides sp. JS614]
 gi|238066419|sp|A1SJ39|RIMO_NOCSJ RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|119537207|gb|ABL81824.1| SSU ribosomal protein S12P methylthiotransferase [Nocardioides sp.
           JS614]
          Length = 480

 Score =  138 bits (348), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 120/454 (26%), Positives = 202/454 (44%), Gaps = 39/454 (8%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC  N  DS  +     + G+  V    +AD +V+NTC   E A +     L +  +L
Sbjct: 20  TLGCARNEVDSEELAGRLEADGFRLVQDPAEADTVVVNTCGFVEAAKKDSVDTLLQAADL 79

Query: 91  K-NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR----- 144
           K  S   +G    VV  GC+A+  G+++    P  + V G   Y   P++  R R     
Sbjct: 80  KARSEQGQGRTRAVVAVGCLAERYGKDLAASLPEADAVFGFDDY---PDIAARLRSIVAG 136

Query: 145 --------FGKRVVDTDYSVEDKFERLSI---VDGGYNRKR----GVTAFLTIQEGCDKF 189
                     +R +     VE       +     G  + +R    G TA L +  GCD+ 
Sbjct: 137 EAHEAHTPHDRRTLLPITPVERVLSTTPVPGHASGPASVRRRLDDGPTAALKLASGCDRR 196

Query: 190 CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSD 249
           C+FC +P  RG  +SR  S V+ EAR L D+G  E+ L+ +N  ++ GK L G+      
Sbjct: 197 CSFCAIPAFRGSFLSRRPSDVLQEARWLADHGARELFLVSENSTSY-GKDL-GDLRLLET 254

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
           LL  L+ + G+ R+R +   P +    LI+A      + PY  L  Q  S  +L+ M R 
Sbjct: 255 LLPELAAVDGVERVRVSYLQPAETRAGLIEAIASTPGVAPYFDLSFQHASAPVLRRMRRF 314

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369
                +  ++ ++R   P   + S+ IVGFPGET+ D     D +          F YS 
Sbjct: 315 GDPESFLALLAQVRGHAPAAGVRSNVIVGFPGETEQDLETLCDFLVAARLDVTGVFGYSD 374

Query: 370 RLGTPGSNMLEQVDEN---VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-----H 421
             GT  +    ++D++    + E +  L ++L  Q+ +     +G+ +EVL+E+      
Sbjct: 375 EDGTEAATYDGKLDDDEIRARVEHVSDLVEELTSQRAAER---LGEQVEVLVERVEDGPG 431

Query: 422 GKE-KGKLVGRSPWLQSVV-LNSKNHNIGDIIKV 453
           G+  +G+   + P +     L   +  +GD+++ 
Sbjct: 432 GRTVEGRAAHQGPEVDGATYLLDSDARVGDLVRA 465


>gi|210134483|ref|YP_002300922.1| miaB-like tRNA modifying enzyme [Helicobacter pylori P12]
 gi|210132451|gb|ACJ07442.1| miaB-like tRNA modifying enzyme [Helicobacter pylori P12]
          Length = 418

 Score =  138 bits (347), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 109/392 (27%), Positives = 187/392 (47%), Gaps = 39/392 (9%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF--FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           ++ + K++GC+ N++D+  M +    FS   E      +AD++V+N+C +   A   V S
Sbjct: 2   KKVYFKTFGCRTNLFDTQVMGENLKDFSATLEE----QEADIVVINSCTVTNGADSAVRS 57

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-E 141
           +  ++  L            V+  GC  + +G+E+  +   +  V G     ++  LL E
Sbjct: 58  YAKKMARLNKE---------VLFTGCGVKTQGKELFEKG-FLKGVFGHDNKEKINALLQE 107

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           + RF       D ++E+K    ++V     + R   AF+ IQEGCD  C +C++P  RG 
Sbjct: 108 KKRFF-----IDDNLENKHLDTTMVSEFVGKTR---AFIKIQEGCDFDCNYCIIPSVRGR 159

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
             S    +++++   L   GV E+ L G NV ++   G D E    + L+  LS+I GL 
Sbjct: 160 ARSFEERKILEQVGLLCSKGVQEVVLTGTNVGSY---GKDKE-SNIARLIKKLSQIAGLK 215

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R  +  P  + +       + D L  +LH+ +Q   D +L+ MNRR+     R+++++
Sbjct: 216 RIRIGSLEPNQI-NDEFLELLEEDFLEKHLHIALQHSHDFMLERMNRRNRTKSDRELLEK 274

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I S   + AI +DFIVG PGE+   F      ++ +       F YS R  TP S M + 
Sbjct: 275 IAS--KNFAIGTDFIVGHPGESGSVFEKAFKNLESLPLTHIHPFIYSKRKDTPSSLMRDS 332

Query: 382 VDENVKAERLLCLQ-------KKLREQQVSFN 406
           V      +RL  ++       K  R+ Q+  N
Sbjct: 333 VSLEDSKKRLNAIKDLILHKNKAFRQLQLKLN 364


>gi|189465617|ref|ZP_03014402.1| hypothetical protein BACINT_01975 [Bacteroides intestinalis DSM
           17393]
 gi|189437891|gb|EDV06876.1| hypothetical protein BACINT_01975 [Bacteroides intestinalis DSM
           17393]
          Length = 432

 Score =  138 bits (347), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 120/450 (26%), Positives = 209/450 (46%), Gaps = 39/450 (8%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDD--ADLIVLNTCHIREKAAEKVYSFLGRIR 88
           + GC  N+ DS  +       GY   +  +    ++ V+NTC     A E+  + +    
Sbjct: 10  TLGCSKNLVDSEHLMRQLEEAGYHVTHDTEKPKGEIAVINTCGFIGDAKEESINMI---- 65

Query: 89  NLKNSRIKEGGDL-LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147
            L+ ++ KE G+L  + V GC+++   +E+    P V+   G    +   ELL     GK
Sbjct: 66  -LEFAQAKEEGNLEKLYVMGCLSERYLKELAIEIPQVDKFYGK---FNWAELL--LDLGK 119

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
                 Y  E   ER       Y       A+L I EGCD+ C++C +P   G  +SR +
Sbjct: 120 A-----YHEELHIERTLTTPKHY-------AYLKISEGCDRKCSYCAIPIITGRHVSRPV 167

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYT 266
            +++DE R L++ GV E  ++ Q +  +   G+D  +K    +L+  +SEI G+  +R  
Sbjct: 168 EEILDEVRYLVNKGVKEFQIIAQELTYY---GVDLYKKQMLPELIERISEIPGVEWIRLH 224

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
            ++P      L +   +   +  Y+ + +Q  S+ +L+ M R  T  E  Q+I++ R   
Sbjct: 225 YAYPAHFPTDLFRVMRERPNVCKYMDIALQHISNSMLEKMRRHVTQEETYQLIEQFRKEV 284

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE-QVDEN 385
           P I + +  +VG PGET+ DF    + V K+ + +  +F YS   GT  +   E ++ + 
Sbjct: 285 PGIHLRTTLMVGHPGETESDFEELKEFVRKVRFDRMGAFAYSEEEGTYAAAHYEDEIPQE 344

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVVLN 441
           VK  RL  L    +      + A VGQ ++V+I++   E    +GR    SP +   VL 
Sbjct: 345 VKQARLDELMSIQQGISAELSAAKVGQSMKVIIDR--LEGDYYIGRTEFDSPEVDPEVLI 402

Query: 442 SKNHN---IGDIIKVRITDVKISTLYGELV 468
            +      IG+  +V I       L+G+++
Sbjct: 403 ERGEQTLLIGNFYQVEIISSDDFDLFGQVI 432


>gi|217033424|ref|ZP_03438854.1| hypothetical protein HP9810_1g38 [Helicobacter pylori 98-10]
 gi|216944129|gb|EEC23557.1| hypothetical protein HP9810_1g38 [Helicobacter pylori 98-10]
          Length = 418

 Score =  138 bits (347), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 108/393 (27%), Positives = 189/393 (48%), Gaps = 41/393 (10%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF--FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           ++ + K++GC+ N++D+  M +    FS   E      +AD+I++N+C +   A   V S
Sbjct: 2   KKVYFKTFGCRTNLFDTQVMGENLKDFSATLEE----QEADIIIINSCTVTNGADSAVRS 57

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-E 141
           +  ++  L            V+  GC  + +G+E+  +  ++  V G     ++  LL E
Sbjct: 58  YAKKMVRLNKE---------VLFTGCGVKTQGKELFEKG-LLKGVFGHDNKEKINALLQE 107

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           + RF       D ++E+K    ++V     + R   AF+ IQEGCD  C +C++P  RG 
Sbjct: 108 KKRFF-----IDDNLENKHLDTTMVSEFVGKTR---AFIKIQEGCDFDCNYCIIPSVRGR 159

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-RGKGLDGEKCTFSDLLYSLSEIKGL 260
             S    +++++   L   GV E+ L G NV ++ + KG        + L+  LS+I GL
Sbjct: 160 ARSFEERKILEQVSLLCSKGVQEVVLTGTNVGSYGKDKG-----SNIARLIKKLSQIAGL 214

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R  +  P  + +       + D L  +LH+ +Q   D +L+ MNRR+ A   R++++
Sbjct: 215 KRIRIGSLEPNQI-NDEFLELLEEDFLEKHLHIALQHSHDFMLERMNRRNRAKSDRELLE 273

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
            I S   + AI +DFI+G PGE++  F      ++ +       F YS R  TP S M +
Sbjct: 274 VIAS--KNFAIGTDFIIGHPGESESVFEEAFKNLESLPLTHIHPFIYSKRKDTPSSLMTD 331

Query: 381 QVDENVKAERLLCLQ-------KKLREQQVSFN 406
            V      +RL  ++       K  R+ Q+  N
Sbjct: 332 SVSLEDSKKRLNAIKDLILHKNKAFRQLQLKLN 364


>gi|307354819|ref|YP_003895870.1| MiaB-like tRNA modifying enzyme [Methanoplanus petrolearius DSM
           11571]
 gi|307158052|gb|ADN37432.1| MiaB-like tRNA modifying enzyme [Methanoplanus petrolearius DSM
           11571]
          Length = 404

 Score =  138 bits (347), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 114/454 (25%), Positives = 210/454 (46%), Gaps = 67/454 (14%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHI---REKAAEKVY 81
           ++  +++YGC  N  D+ ++  +   QG   V    +A+ +++NTC +    E+A  +V 
Sbjct: 7   KKIHLETYGCTFNFADTEKIVRVAEKQGCSIVPP-GEAEAVIINTCTVVAQTERAMLRV- 64

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
                        I E  D  + V GC+A  + + I    P   +++ P+   R PE + 
Sbjct: 65  -------------IAEFPDKEIYVTGCMAVVQPDLIYGVRPDARLIL-PEDLNRCPETIG 110

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
                                 S+VDG        T  +    GC   C +C+    RG 
Sbjct: 111 ----------------------SLVDGS-------TGIVQTARGCVSRCAYCITRSARGR 141

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
             S    ++++E  +L+  G  EI L GQ+++A+   G+D    +  DLL  ++ ++G  
Sbjct: 142 LRSFPEDKIIEEIERLVSAGAVEIQLTGQDLSAY---GMD-TGSSLPDLLNRINSLEGEF 197

Query: 262 RLRYTTSHPR-------DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
            +R    +P        ++SD  +      + +  + HLPVQSGSD++L  M R +   +
Sbjct: 198 MVRVGMMNPSTAIPLTDELSDAFLG-----EKIFSFAHLPVQSGSDKVLSDMKRGYQVQD 252

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
           +R ++  +R   P I IS+DFIVG+P ET++DF  T+ L+++I   +    ++S R GT 
Sbjct: 253 FRNLVAELRKKDPGIRISTDFIVGYPTETEEDFLKTLALLEEIRPTKVNITRFSAREGTD 312

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPW 434
            +  L+ + + +K ER   L         S N++ +G+ ++V++ +  K  G  + R   
Sbjct: 313 AAK-LKDIPDWIKKERSRALTIAANRLYDSVNESFIGKDLDVIVTER-KRAGSCIARDKS 370

Query: 435 LQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
             ++V+  +  + G   +VRI   +   L GE +
Sbjct: 371 YNNIVIE-EELDAGTRCRVRIVSHRRHYLIGERI 403


>gi|153816137|ref|ZP_01968805.1| hypothetical protein RUMTOR_02385 [Ruminococcus torques ATCC 27756]
 gi|145846472|gb|EDK23390.1| hypothetical protein RUMTOR_02385 [Ruminococcus torques ATCC 27756]
          Length = 266

 Score =  138 bits (347), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 91/270 (33%), Positives = 148/270 (54%), Gaps = 12/270 (4%)

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
           + +++ EA++L + GV E+ L+ Q    + GK L GEKC    L+  L +I G+  +R  
Sbjct: 1   MERLIKEAKELAEQGVKELILVAQETTLY-GKDLYGEKC-LHRLVEELCKIAGIRWIRIL 58

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
             +P +++D LI+       +  YL LP+Q  SD ILK M RR +  E   I+ ++R   
Sbjct: 59  YCYPEEITDELIEVIKKEPKVCHYLDLPIQHASDSILKRMGRRTSKQELTDIVKKLRKEI 118

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           PDI + +  I GFPGET+D     M  VD++ + +   F YSP   TP + M +Q+ E V
Sbjct: 119 PDICLRTTLITGFPGETEDQHEELMQFVDEMEFDRLGVFTYSPEEDTPAAVMPDQIAEEV 178

Query: 387 KAERLLCLQKKLREQQVSFNDA--CVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVV- 439
           K ER   L +   +Q+++F++A   +G+ + V+IE    ++   VGR+    P +  ++ 
Sbjct: 179 KEERQADLME--LQQEIAFDNAENMIGREMLVMIEGKVADENAYVGRTYRDAPNVDGLIF 236

Query: 440 LNSKNHNI-GDIIKVRITDVKISTLYGELV 468
           +N++   I GD  KV+IT      L GEL+
Sbjct: 237 INTEEELISGDFAKVKITGALEYDLIGELL 266


>gi|255009413|ref|ZP_05281539.1| putative oxidoreductase [Bacteroides fragilis 3_1_12]
 gi|313147172|ref|ZP_07809365.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313135939|gb|EFR53299.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 432

 Score =  138 bits (347), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 115/450 (25%), Positives = 213/450 (47%), Gaps = 39/450 (8%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDD--ADLIVLNTCHIREKAAEKVYSFLGRIR 88
           + GC  N+ DS ++       GY+  +  +    ++ V+NTC     A E+  + +    
Sbjct: 10  TLGCSKNLVDSEQLMRQLEEAGYDVTHDSEKPTGEIAVINTCGFIGDAKEESINMI---- 65

Query: 89  NLKNSRIKEGGDL-LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147
            L+ ++ KE G+L  + V GC+++   +E+    P V+   G   +  L + L +A    
Sbjct: 66  -LEFAQEKEEGNLEKLFVMGCLSERYLKELAIEIPQVDKFYGKFNWKELLQDLGKA---- 120

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
                 Y  E   ER       Y       A+L I EGCD+ C++C +P   G  +SR +
Sbjct: 121 ------YHDELHIERTLTTPKHY-------AYLKISEGCDRKCSYCAIPIITGRHVSRPM 167

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYT 266
            +++DE R L+ NGV E  ++ Q +  +   G+D  +K    +L+  +SEI G+  +R  
Sbjct: 168 EEILDEVRYLVSNGVKEFQVIAQELTYY---GVDLYKKQMLPELIERVSEIPGVEWIRLH 224

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
            ++P    + L +   + D +  Y+ + +Q  SD +L+ M R  T  +  ++I++ R   
Sbjct: 225 YAYPAHFPEDLFRVMRERDNVCKYMDIALQHISDNMLQRMRRHVTKEDTYRLIEQFRKEV 284

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT-PGSNMLEQVDEN 385
           P I + +  +VG PGET++DF    + V K+ + +  +F YS   GT   +N  + + + 
Sbjct: 285 PGIHLRTTLMVGHPGETEEDFEELKEFVRKVRFDRMGAFAYSEEEGTYAAANYEDSIPQE 344

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVVL- 440
           VK  RL  L    +      + + VG  ++V+I++   E    VGR    SP +   VL 
Sbjct: 345 VKQARLDELMDIQQGISAELSASKVGWQMKVIIDR--IEGDYYVGRTEFDSPEVDPEVLI 402

Query: 441 --NSKNHNIGDIIKVRITDVKISTLYGELV 468
                +  +G+  ++ + D     L+ +++
Sbjct: 403 KCEGDSLRVGNFYQIEVIDSDEFDLFAKVI 432


>gi|283956827|ref|ZP_06374301.1| MiaB-like tRNA modifying enzyme YliG [Campylobacter jejuni subsp.
           jejuni 1336]
 gi|283791688|gb|EFC30483.1| MiaB-like tRNA modifying enzyme YliG [Campylobacter jejuni subsp.
           jejuni 1336]
          Length = 439

 Score =  137 bits (346), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 101/371 (27%), Positives = 182/371 (49%), Gaps = 21/371 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + ++ S GC  N+ DS  M        YE  +    AD++++NTC   + A ++    + 
Sbjct: 3   KLYLMSLGCNKNLVDSEIMLGRL--STYELCDEPSKADVLIVNTCGFIDSAKKES---IN 57

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            I +L   R K   D L+VV GC+ Q   EE+++  P V++  G   Y R+ E++ +   
Sbjct: 58  AILDLHEQRKK---DSLLVVTGCLMQRYREELMKELPEVDLFTGVGDYERIDEMILKK-- 112

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                ++ Y   +  +R  I+ G         AF+ I EGC++ C+FC +P  +G   SR
Sbjct: 113 TNLFSNSTYLQSENSKR--IITGS-----NFHAFIKIAEGCNQKCSFCAIPSFKGKLKSR 165

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            ++ ++ E + L+  G  + + + Q+ +++       EK     L+  + +IKG+   R 
Sbjct: 166 EINSIIAELKDLVARGYKDFSFIAQDTSSYLFD--KSEKDGLIRLIDEVEKIKGIRAARI 223

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
              +P   S+ LIK     ++ + Y  +P+Q  SD +LK M R   +   +++++ ++S 
Sbjct: 224 LYLYPTSASEALIKRIIASEIFVNYFDMPLQHISDNMLKIMKRGANSTRLKEMLNLMKSA 283

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P+  + + FIVG PGE++ DF    + V   G+ +   F YS    T   +M EQV   
Sbjct: 284 -PNSFLRTGFIVGHPGESEADFEELCEFVKDFGFDRVSVFAYSKEEDTAAFDM-EQVSFK 341

Query: 386 VKAERLLCLQK 396
           V  +RL  ++K
Sbjct: 342 VINKRLKIIEK 352


>gi|153951587|ref|YP_001397915.1| MiaB-like tRNA modifying enzyme [Campylobacter jejuni subsp. doylei
           269.97]
 gi|152939033|gb|ABS43774.1| MiaB-like tRNA modifying enzyme [Campylobacter jejuni subsp. doylei
           269.97]
          Length = 416

 Score =  137 bits (346), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 104/410 (25%), Positives = 194/410 (47%), Gaps = 55/410 (13%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + ++ F K++GC+ N+YD+  ++   + + YE +N  + A +IV+N+C +   A   + S
Sbjct: 1   MKEKVFFKTFGCRTNIYDTELLKS--YVKDYEIINDENKAQIIVVNSCTVTNGADSGIKS 58

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPI-----------VNVVVGPQ 131
           ++       N+  K+G  + V++ GC A ++G+E+L +  +           +N  +G +
Sbjct: 59  YV-------NTMKKKG--IKVILTGCGAVSKGKELLDKKQVFGVLGASNKDKINEFLGAK 109

Query: 132 T-YYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190
           T +Y L  L          +D D   E               +    AF+ IQEGCD  C
Sbjct: 110 TSFYELGNL--------NFIDKDIVCE--------------YENHTKAFVKIQEGCDFAC 147

Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDL 250
           ++C++P  RG   S     ++ +   L  NG  EI L G N+ ++   GL     T   L
Sbjct: 148 SYCIIPSVRGKSRSVDEKALLKQVEILGANGYSEIVLTGTNIGSY---GLKN-GTTLGKL 203

Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
           L  + +I G+ R+R  +  P  + +  ++   D   L  +LH+ +Q  S+++L+ M RR 
Sbjct: 204 LQKMGQISGIKRIRLGSLEPAQLDESFLEIL-DETWLERHLHIALQHTSEKMLRIMRRRS 262

Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370
                 ++ + I S     A+ +DFIV  PGE+++ ++  +    +       +F +SPR
Sbjct: 263 HTDNDLKLFNTIAS--KGYALGTDFIVAHPGESEELWQEALKKFKEFPLTHIHAFIFSPR 320

Query: 371 LGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQI-IEVLIE 419
             T  + M + ++  +  ERL  L+  + +    F      Q+ +EVL+E
Sbjct: 321 NNTHSATMKDVINGTLAKERLNTLKSIVEKNNYEFRKK--NQVSLEVLVE 368


>gi|239944734|ref|ZP_04696671.1| hypothetical protein SrosN15_27314 [Streptomyces roseosporus NRRL
           15998]
 gi|239991198|ref|ZP_04711862.1| hypothetical protein SrosN1_28096 [Streptomyces roseosporus NRRL
           11379]
          Length = 466

 Score =  137 bits (346), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 120/426 (28%), Positives = 189/426 (44%), Gaps = 54/426 (12%)

Query: 50  SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCV 109
           + G++ V    DAD+ V+NTC   E A +     L    +LK+     G    VV  GC+
Sbjct: 3   ADGWDLVEDASDADVAVVNTCGFVEAAKKDSVDALLEANDLKD----HGRTQAVVAVGCM 58

Query: 110 AQAEGEEILRRSPIVNVVVGPQTYYRLPELLER--------------------------- 142
           A+  G+++    P  + V+G   Y  + + L+                            
Sbjct: 59  AERYGKDLAEALPEADGVLGFDDYADISDRLQTILNGGIHASHTPRDRRKLLPISPAERQ 118

Query: 143 ----ARFGKRVVDTDYSVEDKFERLSIVDGG---YNRKRGVTAFLTIQ--EGCDKFCTFC 193
               A  G        + ED  E ++ V G      R+ G +   +++   GCD+ C+FC
Sbjct: 119 DAAVALPGHAQETPAPAPEDLPEGVAPVSGPRAPLRRRLGTSPVASVKLASGCDRRCSFC 178

Query: 194 VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS 253
            +P  RG  ISR  S V+ E R L + GV E+ L+ +N N   GK L G+      LL  
Sbjct: 179 AIPSFRGSFISRRPSDVLQETRWLAEQGVKEVMLVSEN-NTSYGKDL-GDIRLLETLLPE 236

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
           L+++ G+ R+R +   P +M   LI        + PY  L  Q  S  +L++M R     
Sbjct: 237 LADVDGIERIRVSYLQPAEMRPGLIDVLTSTPKVAPYFDLSFQHSSPSVLRTMRRFGDTD 296

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA-----TMDLVDKIGYAQAFSFKYS 368
            + +++D IRS  P     S+FIVGFPGET+ D        T   +D IG      F YS
Sbjct: 297 RFLELLDTIRSKAPQAGARSNFIVGFPGETEADLAELERFLTGARLDAIGV-----FGYS 351

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGK 427
              GT       ++D +V AERL  + +   E      +  VG+ ++VL+E    ++ G+
Sbjct: 352 DEEGTEAVGYENKLDADVIAERLAHISQLAEELTSQRAEERVGETLQVLVESVESEDDGE 411

Query: 428 L-VGRS 432
           + +GR+
Sbjct: 412 VAIGRA 417


>gi|317180090|dbj|BAJ57876.1| hypothetical protein HPF32_0294 [Helicobacter pylori F32]
          Length = 418

 Score =  137 bits (346), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 108/393 (27%), Positives = 188/393 (47%), Gaps = 41/393 (10%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF--FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           ++ + K++GC+ N++D+  M +    FS   E      +AD+I++N+C +   A   V S
Sbjct: 2   KKVYFKTFGCRTNLFDTQVMGENLKDFSMTLEE----QEADIIIINSCTVTNGADSAVRS 57

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-E 141
           +  ++  L            V+  GC  + +G+E+  +   +  V G     ++  LL E
Sbjct: 58  YAKKMARLNKE---------VLFTGCGVKTQGKELFEKG-FLKGVFGHDNKEKINALLQE 107

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           + RF       D ++E+K    ++V     + R   AF+ IQEGCD  C +C++P  RG 
Sbjct: 108 KKRFF-----IDDNLENKHLDTTMVSEFVGKTR---AFIKIQEGCDFDCNYCIIPSVRGR 159

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-RGKGLDGEKCTFSDLLYSLSEIKGL 260
             S    +++++   L   GV E+ L G NV ++ + KG        + L+  LS+I GL
Sbjct: 160 ARSFEERKILEQVGLLCSKGVQEVVLTGTNVGSYGKDKG-----SNIARLIKKLSQIAGL 214

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R  +  P  + +       + D L  +LH+ +Q   D +L+ MNRR+ A   R++++
Sbjct: 215 KRIRIGSLEPNQI-NDEFLELLEEDFLEKHLHIALQHSHDFMLEKMNRRNRAKSDRELLE 273

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
            I S   + AI +DFIVG PGE+   F+     ++ +       F Y+ R  TP S M +
Sbjct: 274 AIAS--KNFAIGTDFIVGHPGESGSVFKEAFKNLESLPLTHIHPFIYNKRKDTPSSLMTD 331

Query: 381 QVDENVKAERLLCLQ-------KKLREQQVSFN 406
            V      +RL  ++       K  R+ Q+  N
Sbjct: 332 SVSLEDSKKRLNAIKDLILHKNKAFRQLQLKLN 364


>gi|284992324|ref|YP_003410878.1| MiaB-like tRNA modifying enzyme YliG [Geodermatophilus obscurus DSM
           43160]
 gi|284065569|gb|ADB76507.1| MiaB-like tRNA modifying enzyme YliG [Geodermatophilus obscurus DSM
           43160]
          Length = 475

 Score =  137 bits (346), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 115/420 (27%), Positives = 194/420 (46%), Gaps = 49/420 (11%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA-EKVYSFLGRI 87
           V + GC  N  DS  +     + GY  V   + AD +++NTC   E A  + V + L   
Sbjct: 13  VVTLGCARNEVDSEELAGRLAAGGYRLVEDAEGADAVLVNTCGFIESAKKDSVDAVLAAT 72

Query: 88  RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147
            +   +R        VV  GC+A+  G E+    P   V+ G   Y  + + L+    G+
Sbjct: 73  DS--GAR--------VVAVGCMAERYGSELAGALPEATVL-GFDDYTAIGDRLDDVLTGR 121

Query: 148 RVVDTD---------YSVEDKFERLSIVD-------GGYNRKR---GVTAFLTIQEGCDK 188
            ++  D          S  D+   ++ +D       G   R+R   G +A L +  GCD+
Sbjct: 122 PLIPHDPRDRRTLLPISPVDRSAAVTALDAPAIPGHGWLQRRRLASGPSAALKLASGCDR 181

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS 248
            C FC +P  RG  +SR  ++V+ EA+ L   GV E+ L+ +N  ++ GK L G+     
Sbjct: 182 RCAFCAIPAFRGSFVSRPPAEVLGEAQWLASQGVTELVLVSENSTSY-GKDL-GDLRHLE 239

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
            LL  L+ ++G+ R+R     P ++   L++     D + PY  L  Q  S  +L+ M R
Sbjct: 240 RLLPQLAAVEGIARVRVAYLQPAELRPGLLEVIAATDGIAPYFDLSFQHSSPTLLRRMRR 299

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDD--------FRATMDLVDKIGYA 360
                ++  +IDR R++ P     ++ I+GFPGET+DD            +D V   GY+
Sbjct: 300 FGGTDDFLALIDRARALAPAAGFRTNVILGFPGETEDDVAELEHFLVEGRLDAVGVFGYS 359

Query: 361 QAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
                + +  +G PG   L+Q + +V+  R+  L ++L  Q+       +G  +EVL+ +
Sbjct: 360 DE---EGTEAMGLPGK--LDQAEIDVRVRRITDLVEELTAQRAEDR---LGDRVEVLLTE 411


>gi|109947136|ref|YP_664364.1| hypothetical protein Hac_0545 [Helicobacter acinonychis str.
           Sheeba]
 gi|109714357|emb|CAJ99365.1| conserved hypothetical protein [Helicobacter acinonychis str.
           Sheeba]
          Length = 418

 Score =  137 bits (346), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 106/374 (28%), Positives = 184/374 (49%), Gaps = 32/374 (8%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF--FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           ++ + K++GC+ N++D+  M +    FS   E     ++AD+I++N+C +   A   V S
Sbjct: 2   KKVYFKTFGCRTNLFDTQVMGENLKDFSATLEE----NEADIIIINSCTVTNGADSAVRS 57

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-E 141
           +  ++  L            V+  GC  + +G+E+  +   +  V G     ++  LL E
Sbjct: 58  YAKKMVRLNKE---------VLFTGCGVKTQGKELFEKG-FLKGVFGHDNKEKINTLLQE 107

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           + RF       D ++E+K    ++V     + R   AF+ IQEGCD  C +C++P  RG 
Sbjct: 108 KKRFF-----IDDNLENKHLDTTMVSEFVGKTR---AFIKIQEGCDFDCNYCIIPSVRGR 159

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
             S    +++++   L   GV E+ L G NV ++   G D E    + L+  LS+I GL 
Sbjct: 160 ARSFEERKILEQVGLLCAKGVQEVVLTGTNVGSY---GKDRE-SNIARLIKKLSQIVGLK 215

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R  +  P  + +       + D L  +LH+ +Q   D +L+ MNRR+     R++++ 
Sbjct: 216 RIRIGSLEPNQI-NDEFLELLEEDFLEKHLHIALQHSHDFMLERMNRRNRVKSDRELLEV 274

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I S   + AI +DFIVG PGE++  F    + ++ +       F YS R  TP S M + 
Sbjct: 275 IAS--KNFAIGTDFIVGHPGESESVFEKAFENLEGLPLTHIHPFIYSKRKDTPSSLMHDS 332

Query: 382 VDENVKAERLLCLQ 395
           V   V  +RL  ++
Sbjct: 333 VSLEVSKKRLNAIK 346


>gi|159479894|ref|XP_001698021.1| hypothetical protein CHLREDRAFT_120503 [Chlamydomonas reinhardtii]
 gi|158273820|gb|EDO99606.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 420

 Score =  137 bits (346), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 106/409 (25%), Positives = 193/409 (47%), Gaps = 37/409 (9%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC  NV D   +       G+E  +  +++D I++NTC   E A  +    +    +L
Sbjct: 3   ALGCPKNVVDGEVLLGDLARAGFEVTDDHEESDAIIVNTCAFVEDAKSESLEAIVEAASL 62

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
                ++G    +VV GC+AQ    ++    P  ++VVG Q+Y  L   L+++       
Sbjct: 63  N----EDGRRRKLVVTGCLAQRYSSQLAADLPEADLVVGFQSYGNLAASLQKS------- 111

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR--GIEISRSLS 208
                +E   E L+I +         +A+L + EGC+  CTFC +P  R   +     LS
Sbjct: 112 ---MGMEVTPEALAIAEA--------SAYLRVAEGCNHACTFCAIPGFRCPTLTCPTDLS 160

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
           ++                ++  + +A R  G D      + LL  L +++GL  +R   +
Sbjct: 161 RLQAHTHTHTHTSFTHAHIVHTHTHARRRDGRD-----LAQLLRELGKLEGLRWIRILYA 215

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
           +P   +D LI    +   +  YL +P+Q  ++  L +MNR    +  + ++ ++R   P 
Sbjct: 216 YPSYFNDELIDEIANNPKVCKYLDMPLQHIANLTLLAMNRPPKEHTTK-LLAKLRERIPG 274

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD---EN 385
           +A+ + FI GFPGE+D+  R  +D V    + +   F +S   GTP + M EQV      
Sbjct: 275 LALRTTFISGFPGESDEQHRELVDFVKTFKFERMGCFAFSEEDGTPAATMPEQVPRRQRE 334

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPW 434
            + + L+ LQ+++ E+   + +  VG+ ++VL+E +  + G L+GR+ W
Sbjct: 335 RRRDELISLQQRIGEE---WAEGLVGREVDVLVEGY-NDDGWLIGRTQW 379


>gi|254778988|ref|YP_003057093.1| putative MiaB-like tRNA modifying enzyme [Helicobacter pylori B38]
 gi|254000899|emb|CAX28835.1| Putative MiaB-like tRNA modifying enzyme [Helicobacter pylori B38]
          Length = 418

 Score =  137 bits (346), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 110/395 (27%), Positives = 187/395 (47%), Gaps = 45/395 (11%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF--FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           ++ + K++GC+ N++D+  M +    FS   E      +AD+IV+N+C +   A   V S
Sbjct: 2   KKVYFKTFGCRTNLFDTQVMGENLKDFSATLEE----QEADIIVINSCTVTNGADSAVRS 57

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-E 141
           +  ++  L            V+  GC  + +G+E+  +   +  V G     ++  LL E
Sbjct: 58  YAKKMARLNKE---------VLFTGCGVKTQGKELFEKG-FLKGVFGHDNKEKINALLQE 107

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           + RF       D ++E+K    ++V     + R   AF+ IQEGCD  C +C++P  RG 
Sbjct: 108 KKRFF-----IDDNLENKHLDTTMVSEFVGKTR---AFIKIQEGCDFDCNYCIIPSVRGR 159

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW---RGKGLDGEKCTFSDLLYSLSEIK 258
             S    +++++   L   GV E+ L G NV ++   RG  +       + L+  LS+I 
Sbjct: 160 ARSFEERKILEQVGLLCSKGVQEVVLTGTNVGSYGKDRGSNI-------ARLIKKLSQIA 212

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           GL R+R  +  P  + +       + D L  +LH+ +Q   D +L+ MNRR+     R++
Sbjct: 213 GLKRIRIGSLEPNQI-NDEFLELLEEDFLEKHLHIALQHSHDFMLERMNRRNRTKSDREL 271

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           ++ I S   + AI +DFIVG PGE+   F      ++ +       F YS R  TP S M
Sbjct: 272 LETIAS--KNFAIGTDFIVGHPGESGSVFEKAFKNLESLPLTHIHPFIYSKRKDTPSSLM 329

Query: 379 LEQVDENVKAERLLCLQ-------KKLREQQVSFN 406
           L+ V      +RL  ++       K  R+ Q+  N
Sbjct: 330 LDSVSLEDSKKRLNAIKDLIFHKNKAFRQLQLKLN 364


>gi|163737731|ref|ZP_02145148.1| hypothetical protein RGBS107_19408 [Phaeobacter gallaeciensis
           BS107]
 gi|161389257|gb|EDQ13609.1| hypothetical protein RGBS107_19408 [Phaeobacter gallaeciensis
           BS107]
          Length = 473

 Score =  137 bits (346), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 126/462 (27%), Positives = 204/462 (44%), Gaps = 57/462 (12%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC   + DS R+     ++GY        AD +++NTC   + A  +    +G     
Sbjct: 38  SLGCPKALVDSERILTRLRAEGYGVSPDYSGADAVIVNTCGFLDSAKAESLEAIGEA--- 94

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               +KE G   V+V GC+  AE + I    P +  V GP  Y             ++V+
Sbjct: 95  ----LKENGK--VIVTGCLG-AEPDYIRAHHPRILAVTGPHQY-------------EQVL 134

Query: 151 DTDYSV----EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           D  ++      + +  L    G     R  + +L I EGC+  C FC++P  RG   SR 
Sbjct: 135 DAVHAAVPPSPNPYVDLLPAAGVKLTPRHFS-YLKISEGCNHKCKFCIIPDMRGKLASRP 193

Query: 207 LSQVVDEARKLIDNGVCEITLLGQN-----------VNAWRGKGLDGE-KCTFSDLLYSL 254
              V+ EA KL+D GV E+ ++ Q+           VN W+    DGE +    DL   L
Sbjct: 194 AHAVLREAEKLVDAGVRELLVISQDTSAYGLDRKYDVNPWK----DGEVRSHIQDLSREL 249

Query: 255 SEIKG----LVRLRYTTSHPRDMSDCLIKAHGDLD-VLMPYLHLPVQSGSDRILKSMNRR 309
             +       VRL Y   +P      LI    D D  L+PYL +P Q     +L+ M R 
Sbjct: 250 GRLAPADELWVRLHYVYPYPHVRE--LIPLMADPDNALLPYLDIPFQHAHPDVLRRMARP 307

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369
             A +    I+  R+  PDI + S FIVG+PGET+ +F+  +D +D+    +   FKY  
Sbjct: 308 AAAAKTLDEINAWRATCPDITLRSTFIVGYPGETEAEFQHLLDWMDEAQLDRVGCFKYEN 367

Query: 370 RLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVL---IEKHGKEKG 426
             G   +N+ + V E VK +R     +K +    +   A VGQ ++V+   I++ G    
Sbjct: 368 VDGARSNNLADHVPEEVKQDRWDRFMEKAQAISEAKLAAKVGQTMQVIVDDIDEDGIATC 427

Query: 427 KLVGRSPWLQSVVL---NSKNHNIGDIIKVRITDVKISTLYG 465
           +    +P +   +    ++    +G+++ V + +     L+G
Sbjct: 428 RTKADAPEIDGNLFIDEDTDGLQVGELVTVEVDEAGEYDLWG 469


>gi|194336812|ref|YP_002018606.1| MiaB-like tRNA modifying enzyme YliG [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|238066432|sp|B4SBD5|RIMO_PELPB RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|194309289|gb|ACF43989.1| MiaB-like tRNA modifying enzyme YliG [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 431

 Score =  137 bits (345), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 127/459 (27%), Positives = 215/459 (46%), Gaps = 43/459 (9%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEK-V 80
           +   + F+ S GC  N  DS R+     + G     + D+AD I++NTC   E A E+ +
Sbjct: 1   MTTHKLFLLSLGCSKNTVDSERLMAQAEASGIIFTETADEADTILINTCGFIEDAKEESI 60

Query: 81  YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140
              L  I      +  EG    + V GC+ +    E+      V+   G +    LPE+L
Sbjct: 61  TEILAAI-----DKKSEGTIQRLYVMGCLTELYRNELKEEMAEVDGFFGTR---ELPEIL 112

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
             A  G          E+ ++  S++   +        +L I EGC++ C+FC +P  RG
Sbjct: 113 --AALGAAYH------EELYDHRSLLTPPH------YTYLKIAEGCNRSCSFCSIPKIRG 158

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK-G 259
              S+ + Q++ EA  L ++GV E+ ++ Q+++ + G    G K   +DL+  LS++   
Sbjct: 159 RYRSQPVEQLLREAILLKNSGVKELNIISQDISMF-GYDTMG-KSMLNDLVLRLSDMAFD 216

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
            +RL Y  ++P +    +I+   + + +  YL +P+Q  +DRILKSMNR     E  Q+I
Sbjct: 217 WIRLLY--AYPVNFPLEVIETMRERENICNYLDIPLQHCNDRILKSMNRGINKQESIQLI 274

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
           + +R   PDI + +  I G+PGET ++F   ++ V+   + +   F Y      P   + 
Sbjct: 275 ETVREKNPDIRLRTTMIAGYPGETREEFDELLEFVEANRFDRLGCFPYCHEEYAPSFALE 334

Query: 380 EQVDENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQ 436
           + V    K +R   L+ LQ+ + + +   N    G+ I VLI++   E+G   GR+ +  
Sbjct: 335 DNVSAEEKQDRVAELMELQESVSQDK---NRDFEGKEITVLIDQ--VEEGMAFGRTEYDA 389

Query: 437 SVVLNSKNHNIGD-------IIKVRITDVKISTLYGELV 468
             V N      GD           RITD     L GE++
Sbjct: 390 PEVDNECMLETGDFQVEPGMFCHARITDSTPFDLVGEVI 428


>gi|326316483|ref|YP_004234155.1| MiaB-like tRNA modifying enzyme YliG [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323373319|gb|ADX45588.1| MiaB-like tRNA modifying enzyme YliG [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 463

 Score =  137 bits (345), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 128/487 (26%), Positives = 211/487 (43%), Gaps = 74/487 (15%)

Query: 14  VSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIR 73
           +S ++     P+  FV S GC   + DS  +     ++GY+   + + ADL+++NTC   
Sbjct: 1   MSDVLSPTKTPKVGFV-SLGCPKALTDSELILTQLSAEGYQTSKTFEGADLVIVNTCGFI 59

Query: 74  EKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGE---EILRR-SPIVNVVVG 129
           + A ++    +G         + E G   V+V GC+    GE    ++R   P V  V G
Sbjct: 60  DDAVKESLDTIGEA-------LAENGK--VIVTGCLGARAGEGGGNLVREMHPSVLAVTG 110

Query: 130 PQTYYRLPELLERARFGKRVVDTDYS----VEDKFERLSIVDGGYNRKRGVT------AF 179
           P                + V+D  +       D F  + +V G +    G+       A+
Sbjct: 111 PHAT-------------QEVMDAVHQNLPKPHDPF--IDLVPGNFGVA-GIKLTPKHYAY 154

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA----- 234
           L I EGC+  CTFC++P  RG  +SR +  V+ EA+ L + GV E+ ++ Q+ +A     
Sbjct: 155 LKISEGCNHRCTFCIIPSMRGDLVSRPVGDVLSEAKALFEGGVKELLVISQDTSAYGVDV 214

Query: 235 ------WRGKGLDGEKCTFSDLLYSLSEIK----GLVRLRYTTSHPRDMSDCLIKAHGDL 284
                 W GK +   K    +L+ +L EI       VRL Y   +P         A G +
Sbjct: 215 KYRTGFWDGKPV---KTRMLELVQTLGEIAEPYGAWVRLHYVYPYPSVDEVIPFMATGKI 271

Query: 285 DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETD 344
              +PYL +P Q     +L+ M R  +     + I R R   P++ + S FI GFPGET+
Sbjct: 272 ---LPYLDVPFQHSHPDVLRRMKRPASGERNLERIQRWREACPELVVRSTFIAGFPGETE 328

Query: 345 DDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVS 404
           ++F+  +D + +    +A  F YS   G   + +   +   V+ ER         E  + 
Sbjct: 329 EEFQHLLDFLREAQIDRAGCFAYSDVNGAVANELPGMLPMEVREERRARFMAVAEEVSIE 388

Query: 405 FNDACVGQIIEVLIEKHGKEKGKL--VGRS----PWLQSVVL------NSKNHNIGDIIK 452
                VG  ++VL++ H    G+    GRS    P +  VV        SK   +G+  +
Sbjct: 389 RLRRRVGATMQVLVD-HAPALGRKGGTGRSYADAPEIDGVVHLLPPEKISKQLKVGEFTR 447

Query: 453 VRITDVK 459
            +I  V+
Sbjct: 448 AQIVGVQ 454


>gi|239982669|ref|ZP_04705193.1| hypothetical protein SalbJ_24778 [Streptomyces albus J1074]
          Length = 472

 Score =  137 bits (345), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 121/433 (27%), Positives = 189/433 (43%), Gaps = 52/433 (12%)

Query: 40  DSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGG 99
           DS  +     + G++ V   + AD+ V+NTC   E A +     L    +LK     +G 
Sbjct: 2   DSEELAGRLEADGWQLVEDAEAADVAVVNTCGFVEAAKKDSVDALLEANDLK----AQGR 57

Query: 100 DLLVVVAGCVAQAEGEEILRRSPIVNVVVG------------------------PQTYYR 135
              VV  GC+A+  G+E+    P  + V+G                        P+   +
Sbjct: 58  TQAVVAVGCMAERYGKELAEALPEADGVLGFDDYADISDRLQTILGGGIHASHTPRDRRK 117

Query: 136 LPELLERARFGKRVVDTDYSVEDKFERLSIVDG---------GYNRKRGVTAFLTIQ--E 184
           L  +    R    V    ++ E       + DG            R+ G +   +++   
Sbjct: 118 LLPISPAERQDSAVALPGHAQEPAAAPADLPDGLAPASGPRAPLRRRLGTSPVASVKLAS 177

Query: 185 GCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK 244
           GCD+ C+FC +P  RG  ISR  S V+ E R L   GV EI L+ +N N   GK L G+ 
Sbjct: 178 GCDRRCSFCAIPSFRGSFISRRPSDVLQETRWLAGQGVKEIMLVSEN-NTSYGKDL-GDI 235

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304
                LL  L+E+ G+ R+R +   P +M   LI        + PY  L  Q  +  +L+
Sbjct: 236 RLLETLLPELAEVDGIERVRVSYLQPAEMRPGLIDVLTSTPKVAPYFDLSFQHSAPGVLR 295

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA-----TMDLVDKIGY 359
           +M R      +  ++++IR+  P+  + S+FIVGFPGE++ D        T   +D IG 
Sbjct: 296 AMRRFGDTDRFLGLLEQIRAKAPEAGVRSNFIVGFPGESEADVAELERFLTGARLDAIGV 355

Query: 360 AQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419
                F YS   GT  +    ++ E   AERL  + +   E      D  VG+ +EVL+E
Sbjct: 356 -----FGYSDEDGTEAAGYEGKLPEEEVAERLARVSRLAEELVSQRADERVGETVEVLVE 410

Query: 420 KHGKEKGKLVGRS 432
              +E+G  VGR+
Sbjct: 411 SVDEEEGA-VGRA 422


>gi|332300307|ref|YP_004442228.1| Ribosomal protein S12 methylthiotransferase rimO [Porphyromonas
           asaccharolytica DSM 20707]
 gi|332177370|gb|AEE13060.1| Ribosomal protein S12 methylthiotransferase rimO [Porphyromonas
           asaccharolytica DSM 20707]
          Length = 443

 Score =  137 bits (345), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 117/447 (26%), Positives = 204/447 (45%), Gaps = 28/447 (6%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDD--ADLIVLNTCHIREKAAEK 79
           ++  +  V S GC  N+ DS  +       GY   +  ++   ++ V+NTC   + A E+
Sbjct: 1   MIANQIDVISLGCSKNLVDSDALMRRLAQYGYTLRHDPEELTGEIAVVNTCGFIQAAQEE 60

Query: 80  VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL 139
             + +  +   K    KEG    + V GC+ +   EE+    P V+ + G   + +L   
Sbjct: 61  SINLILSLIEAK----KEGRIRAIYVMGCLGERFREELTAELPEVDKIYGKYDWKQLITD 116

Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           L  A          Y         S+    Y       +++ I EGCD+ C++C +P   
Sbjct: 117 LGPALSADDATPLSYRTPPP----SVTPQHY-------SYIKISEGCDRTCSYCAIPLIT 165

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G   SR + ++V E  K +  G  E  ++ Q+ + + G  L  E+   + LL  L++++G
Sbjct: 166 GRHHSRPMEEIVREIEKRVATGCREFQIIAQD-STYYGVDLYQEQA-IATLLDRLAQVEG 223

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           +  LR   ++P      L+      D +  YL L +Q  S+ +L+ M R+ T  E   ++
Sbjct: 224 VHWLRLHYAYPNHFPIELLDVMAKHDNICKYLDLALQHSSNHMLQLMRRQITREETIALL 283

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG-SNM 378
           +RIR   P IA+ +  +VG PGETD+DF   +D V ++ + +  +F+YS   GT    + 
Sbjct: 284 ERIRKQVPGIALRTTMMVGHPGETDEDFADLLDFVSQMRFERLGAFQYSHEEGTYAYKHY 343

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPW 434
            + V   VK ER   L         S N   VG  +EV++++  +E+   VGR    SP 
Sbjct: 344 QDDVPPEVKQERYDALMSIQETISTSINSRKVGTTLEVVVDR--EEEDYYVGRTQYDSPE 401

Query: 435 LQSVVLNSKNH--NIGDIIKVRITDVK 459
           +   V+ S +    +G   +  IT ++
Sbjct: 402 VDGEVILSSDSPLRVGSFYQAEITGIE 428


>gi|317181628|dbj|BAJ59412.1| hypothetical protein HPF57_0338 [Helicobacter pylori F57]
          Length = 418

 Score =  137 bits (345), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 109/395 (27%), Positives = 188/395 (47%), Gaps = 45/395 (11%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF--FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           ++ + K++GC+ N++D+  M +    FS   E      +AD+I++N+C +   A   V S
Sbjct: 2   KKVYFKTFGCRTNLFDTQVMGENLKDFSATLEE----QEADIIIINSCTVTNGADSAVRS 57

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-E 141
           +  ++  L            V+  GC  + +G+E+  +   +  V G     ++  LL E
Sbjct: 58  YAKKMARLNKE---------VLFTGCGVKTQGKELFEKG-FLKGVFGHDNKEKINALLQE 107

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           + RF       D ++E+K    ++V     + R   AF+ IQEGCD  C +C++P  RG 
Sbjct: 108 KKRFF-----IDDNLENKHLDTTMVSEFVGKTR---AFIKIQEGCDFDCNYCIIPSVRGR 159

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW---RGKGLDGEKCTFSDLLYSLSEIK 258
             S    +++++   L   GV E+ L G NV ++   RG  +       + L+  LS+I 
Sbjct: 160 ARSFEERKILEQVSLLCSKGVQEVVLTGTNVGSYGKDRGSNI-------ARLIKKLSQIA 212

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           GL R+R  +  P  + +       + D L  +LH+ +Q   D +L+ MNRR+ A   R++
Sbjct: 213 GLKRIRIGSLEPNQI-NDEFLELLEEDFLEKHLHIALQHSHDFMLERMNRRNRAKSDREL 271

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           ++ I S   + AI +DFIVG PGE++  F      ++ +       F YS R  TP S M
Sbjct: 272 LEVIAS--KNFAIGTDFIVGHPGESESVFEEAFKNLESLPLTHIHPFIYSKRKDTPSSLM 329

Query: 379 LEQVDENVKAERLLCLQ-------KKLREQQVSFN 406
            + V      +RL  ++       K  R+ Q+  N
Sbjct: 330 TDSVSLEDSKKRLNAIKDLILHKNKAFRQLQLKLN 364


>gi|317013730|gb|ADU81166.1| hypothetical protein HPGAM_01600 [Helicobacter pylori Gambia94/24]
          Length = 418

 Score =  137 bits (345), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 109/393 (27%), Positives = 187/393 (47%), Gaps = 41/393 (10%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF--FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           ++ + K++GC+ N++D+  M +    FS   E      +AD+I++N+C +   A   V S
Sbjct: 2   KKVYFKTFGCRTNLFDTQVMGENLKDFSATLEE----QEADIIIINSCTVTNGADSAVRS 57

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-E 141
           +  ++  L            V+  GC  + +G+E+  +   +  V G     ++  LL E
Sbjct: 58  YAKKMARLNKE---------VLFTGCGVKIQGKELFEKG-FLKGVFGHDNKEKINALLQE 107

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           + RF       D ++E+K    ++V     + R   AF+ IQEGCD  C +C++P  RG 
Sbjct: 108 KKRFF-----IDDNLENKHLDTTMVSEFVGKTR---AFIKIQEGCDFDCNYCIIPSVRGR 159

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-RGKGLDGEKCTFSDLLYSLSEIKGL 260
             S    +++++   L   GV E+ L G NV ++ + KG        + L+  LS+I GL
Sbjct: 160 ARSFEERKILEQVGLLCSKGVQEVVLTGTNVGSYGKDKG-----SNIARLIKKLSQITGL 214

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R  +  P  + +       + D L  +LH+ +Q   D +L+ MNRR+     R++++
Sbjct: 215 KRIRIGSLEPNQI-NDEFLELLEEDFLEKHLHIALQHSHDFMLERMNRRNRTKSDRELLE 273

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
            I S   + AI +DFIVG PGE++  F      ++ +       F YS R  TP S M +
Sbjct: 274 IIAS--KNFAIGTDFIVGHPGESESVFEKAFKNLEGLPLTHIHPFIYSKRKDTPSSLMTD 331

Query: 381 QVDENVKAERLLCLQ-------KKLREQQVSFN 406
            V   V  +RL  ++       K  R+ Q   N
Sbjct: 332 SVSLEVSKKRLNAIKDLIFHKNKAFRQLQFKLN 364


>gi|315586279|gb|ADU40660.1| possible 2-methylthioadenine synthase [Helicobacter pylori 35A]
          Length = 418

 Score =  137 bits (345), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 109/393 (27%), Positives = 187/393 (47%), Gaps = 41/393 (10%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF--FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           ++ + K++GC+ N++D+  M +    FS   E      +AD+I++N+C +   A   V S
Sbjct: 2   KKVYFKTFGCRTNLFDTQVMGENLKDFSATLEE----QEADIIIINSCTVTNGADSAVRS 57

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-E 141
           +  ++  L            V+  GC  + +G+E+  +   +  V G     ++  LL E
Sbjct: 58  YAKKMARLNKE---------VLFTGCGVKTQGKELFEKG-FLKGVFGHDNKEKINALLQE 107

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           + RF       D ++E+K    ++V     + R   AF+ IQEGCD  C +C++P  RG 
Sbjct: 108 KKRFF-----IDDNLENKHLDTTMVSEFVGKTR---AFIKIQEGCDFDCNYCIIPSVRGR 159

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-RGKGLDGEKCTFSDLLYSLSEIKGL 260
             S    +++++   L   GV E+ L G NV ++ + KG          L+  LS+I GL
Sbjct: 160 ARSFEERKILEQVSLLCSKGVQEVVLTGTNVGSYGKDKG-----SNIVRLIKKLSQIAGL 214

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R  +  P  + +       + D L  +LH+ +Q   D +L+ MNRR+ A   R++++
Sbjct: 215 KRIRIGSLEPNQI-NDEFLELLEEDFLEKHLHIALQHSHDFMLERMNRRNRAKSDRELLE 273

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
            I S   + AI +DFIVG PGE++  F      ++ +       F YS R  TP S M +
Sbjct: 274 VIAS--KNFAIGTDFIVGHPGESESVFEEAFKNLESLPLTHIHPFIYSKRKDTPSSLMTD 331

Query: 381 QVDENVKAERLLCLQ-------KKLREQQVSFN 406
            V      +RL  ++       K  R+ Q+  N
Sbjct: 332 SVSLEDSKKRLNAIKDLISHKNKAFRQLQLKLN 364


>gi|317177100|dbj|BAJ54889.1| hypothetical protein HPF16_0292 [Helicobacter pylori F16]
          Length = 418

 Score =  137 bits (345), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 108/393 (27%), Positives = 188/393 (47%), Gaps = 41/393 (10%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF--FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           ++ + K++GC+ N++D+  M +    FS   E      +AD+I++N+C +   A   V S
Sbjct: 2   KKVYFKTFGCRTNLFDTQVMGENLKDFSATLEE----QEADIIIINSCTVTNGADSSVRS 57

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-E 141
           +  ++  L            V+  GC  + +G+E+  +  ++  V G     ++  LL E
Sbjct: 58  YAKKMAQLNKE---------VLFTGCGVKTQGKELFEKG-LLKGVFGHDNKEKINTLLQE 107

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           + RF       D ++E+K    ++V     + R   AF+ IQEGCD  C +C++P  RG 
Sbjct: 108 KKRFF-----IDDNLENKHLDTTMVSEFVGKTR---AFIKIQEGCDFDCNYCIIPSVRGR 159

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-RGKGLDGEKCTFSDLLYSLSEIKGL 260
             S    +++++   L   GV E+ L G NV ++ + KG        + L+  LS+I GL
Sbjct: 160 ARSFEERKILEQVGLLCSKGVQEVVLTGTNVGSYGKDKG-----SNIARLIKKLSQIAGL 214

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R  +  P  + +       + D L  +LH+ +Q   D +L+ MNRR+     R++++
Sbjct: 215 KRIRIGSLEPNQI-NDEFLELLEEDFLEKHLHIALQHSHDFMLERMNRRNRTKSDRELLE 273

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
            I S   + AI +DFIVG PGE++  F      ++ +       F YS R  TP S M +
Sbjct: 274 VIAS--KNFAIGTDFIVGHPGESESVFEEAFKNLESLPLTHIHPFIYSKRKDTPSSLMTD 331

Query: 381 QVDENVKAERLLCLQ-------KKLREQQVSFN 406
            V      +RL  ++       K  R+ Q+  N
Sbjct: 332 SVSLEDSKKRLNAIKDLILHKNKAFRQLQLKLN 364


>gi|332673126|gb|AEE69943.1| possible 2-methylthioadenine synthase [Helicobacter pylori 83]
          Length = 418

 Score =  137 bits (345), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 109/393 (27%), Positives = 189/393 (48%), Gaps = 41/393 (10%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF--FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           ++ + K++GC+ N++D+  M +    FS   E      +AD+I++N+C +   A   V S
Sbjct: 2   KKVYFKTFGCRTNLFDTQVMGENLKDFSATLEE----QEADIIIINSCTVTNGADSAVRS 57

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-E 141
           +  ++  L         D  V+  GC  + +G+E+  +  ++  V G     ++  LL E
Sbjct: 58  YAKKMVRL---------DKEVLFTGCGVKTQGKELFEKG-LLKGVFGHDNKEKINALLQE 107

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           + RF       D ++E+K    ++V     + R   AF+ IQEGCD  C +C++P  RG 
Sbjct: 108 KKRFF-----IDDNLENKHLDTTMVSEFVGKTR---AFIKIQEGCDFDCNYCIIPSVRGR 159

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-RGKGLDGEKCTFSDLLYSLSEIKGL 260
             S    +++++   L   GV E+ L G NV ++ + KG        + L+  LS+I GL
Sbjct: 160 ARSFEERKILEQVSLLCSKGVQEVVLTGTNVGSYGKDKG-----SNIARLIKKLSQIAGL 214

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R  +  P  + +       + D L  +LH+ +Q   D +L+ MNRR+     R++++
Sbjct: 215 KRIRIGSLEPNQI-NDEFLELLEEDFLEKHLHIALQHSHDFMLERMNRRNRIKSDRELLE 273

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
            I S   + AI +DFIVG PGE++  F      ++ +       F YS R  TP S M +
Sbjct: 274 VIAS--KNFAIGTDFIVGHPGESESVFEEAFKNLESLPLTHIHPFIYSKRKDTPSSLMTD 331

Query: 381 QVDENVKAERLLCLQ-------KKLREQQVSFN 406
            V      +RL  ++       K  R+ Q+  N
Sbjct: 332 SVSLEDSKKRLNAIKDLILHKNKAFRQLQLKLN 364


>gi|326917127|ref|XP_003204853.1| PREDICTED: CDK5 regulatory subunit-associated protein 1-like
           1-like, partial [Meleagris gallopavo]
          Length = 327

 Score =  137 bits (345), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 95/299 (31%), Positives = 149/299 (49%), Gaps = 26/299 (8%)

Query: 103 VVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFER 162
           VV+AGCV QA+  +   +      ++G Q   R+ E++E    G  V       +D  +R
Sbjct: 9   VVLAGCVPQAQPRQDYLKG---LSIIGVQQIDRVVEVVEETIKGHSVRLLGQK-KDNGKR 64

Query: 163 L--SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN 220
           L  + +D    RK  +   ++I  GC   CT+C   + RG   S  + ++VD A++    
Sbjct: 65  LGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGDLASYPIEELVDRAKQSFQE 124

Query: 221 GVCEITLLGQNVNAW-RGKGLDGEKCTFSDLLYSLSEI--------KGLVRLRYTTSHPR 271
           GVCEI L  ++  A+ R  G D        LL+ L E          G+    Y   H  
Sbjct: 125 GVCEIWLTSEDTGAYGRDIGTD-----LPTLLWKLVEAIPEGAMLRLGMTNPPYILEHLE 179

Query: 272 DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAI 331
           +M+  L     +   +  +LH+PVQS SD +L  M R +   ++R+++D ++   P I I
Sbjct: 180 EMAKIL-----NHPRVYAFLHIPVQSASDSVLMDMKREYCVADFRRVVDFLKEKVPGITI 234

Query: 332 SSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER 390
           ++D I GFPGETD+DF+ TM LV++  +   F  ++ PR GTP + M  QV   VK +R
Sbjct: 235 ATDIICGFPGETDEDFQETMKLVEQYKFPSLFINQFYPRPGTPAAKM-HQVPAAVKKQR 292


>gi|118373032|ref|XP_001019710.1| MiaB-like tRNA modifying enzyme, archaeal-type family protein
           [Tetrahymena thermophila]
 gi|89301477|gb|EAR99465.1| MiaB-like tRNA modifying enzyme, archaeal-type family protein
           [Tetrahymena thermophila SB210]
          Length = 574

 Score =  137 bits (345), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 120/459 (26%), Positives = 207/459 (45%), Gaps = 63/459 (13%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           Q  +VK++GC  N+ DS  M       GY   +   DA LI++N+C ++  + +   +F+
Sbjct: 74  QNVYVKTFGCSHNISDSEFMMGQLAEYGYNLCSDPKDAHLILVNSCTVKNPSQD---AFM 130

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVN--VVVGPQTYYRLPELLER 142
             ++  K+ +        +VVAGCV Q +     R  P +    V+G     R+ E++E 
Sbjct: 131 TIVKTYKHKKKP------IVVAGCVPQGD-----RNIPGLEDVSVIGISQIDRVVEVVEE 179

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
              G +V            RL         K+ + +    +  C   CT+C   + RG  
Sbjct: 180 TLKGNKV------------RLY-------GKKTLPSLDLPKIRCLGSCTYCKTKHARGKL 220

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-RGKGLDGEKCTFSDLLYSLSEI---- 257
            S     +V+  + + + GV EI L  ++  A+ R  G D      S LL  + E+    
Sbjct: 221 GSYQPEAIVNRVKTVCEEGVKEIWLTSEDTGAYGRDIGTD-----ISQLLRLIVEVLPND 275

Query: 258 ----KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
                G+    Y   H ++MS  L         +  +LH+PVQ+ ++ +L++MNR +T  
Sbjct: 276 VMLRVGMTNPPYILEHLQNMSTILRHPR-----VFSFLHIPVQAANNTVLENMNREYTCE 330

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
           E+ Q+ D +    P++ I++D I GFPGET+  F  T+ LVDK  +      ++ PR GT
Sbjct: 331 EFEQVCDYLLKNVPNMTIATDIICGFPGETNAQFDDTLKLVDKYKFPILNISQFYPRPGT 390

Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFN--DACVGQIIEVLIEKHGKEKG--KLV 429
               M +   ++VK        KK+ E   +F   D  +G    + I     +KG  +LV
Sbjct: 391 AAMKMKKVPSQDVKMR-----SKKITELFDTFKRWDHLLGTTQRIWINDKEDKKGVLQLV 445

Query: 430 GRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           G +     V+L  +   +G  + +++T V    + GE++
Sbjct: 446 GHTKQYAKVMLPFEEELLGKSVIIKVTKVLTWHIEGEII 484


>gi|207092233|ref|ZP_03240020.1| hypothetical protein HpylHP_04483 [Helicobacter pylori
           HPKX_438_AG0C1]
          Length = 418

 Score =  137 bits (344), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 108/395 (27%), Positives = 187/395 (47%), Gaps = 45/395 (11%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF--FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           ++ + K++GC+ N++D+  M +    FS   E      +AD+I++N+C +   A   V S
Sbjct: 2   KKVYFKTFGCRTNLFDTQVMGENLKDFSATLEE----QEADIIIINSCTVTNGADSTVRS 57

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-E 141
           +  ++  L            V+  GC  + +G+E+  +   +  V G     ++  LL E
Sbjct: 58  YAKKMARLNKE---------VLFTGCGVKTQGKELFEKG-FLKGVFGHDNKEKINALLQE 107

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           + RF       D ++E+K    ++V     + R   AF+ IQEGCD  C +C++P  RG 
Sbjct: 108 KKRFF-----IDDNLENKHLDTTMVSEFVGKTR---AFIKIQEGCDFDCNYCIIPSVRGR 159

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW---RGKGLDGEKCTFSDLLYSLSEIK 258
             S    +++++   L   GV E+ L G NV ++   RG  +       + L+  LS+I 
Sbjct: 160 ARSFEERKILEQVGLLCSKGVQEVVLTGTNVGSYGKDRGSNI-------AQLIKKLSQIA 212

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           GL R+R  +  P  + +       + D L  +LH+ +Q   D +L+ MNRR+     R++
Sbjct: 213 GLKRIRIGSLEPNQI-NDEFLELLEEDFLEKHLHIALQHSHDFMLERMNRRNRTKSDREL 271

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           +++I S   + AI +DFIVG PGE+   F      ++ +       F YS R  TP S M
Sbjct: 272 LEKIAS--KNFAIGTDFIVGHPGESKSVFEKAFKNLEDLPLTHIHPFIYSKRKDTPSSLM 329

Query: 379 LEQVDENVKAERLLCLQ-------KKLREQQVSFN 406
            + V      +RL  ++       K  R+ Q+  N
Sbjct: 330 TDSVSLEDSKKRLNAIKDLILHKNKAFRQLQLKLN 364


>gi|255693887|ref|ZP_05417562.1| 2-methylthioadenine synthetase [Bacteroides finegoldii DSM 17565]
 gi|260620292|gb|EEX43163.1| 2-methylthioadenine synthetase [Bacteroides finegoldii DSM 17565]
          Length = 434

 Score =  137 bits (344), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 118/456 (25%), Positives = 216/456 (47%), Gaps = 39/456 (8%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDD--ADLIVLNTCHIREKAAEKVYS 82
           +R  + + GC  N+ DS ++       GY   +  ++   ++ V+NTC     A E+  +
Sbjct: 4   RRIDIITLGCSKNLVDSEQLIRQLEEVGYSVTHDTENPQGEIAVINTCGFIGDAKEESIN 63

Query: 83  FLGRIRNLKNSRIKEGGDLL-VVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
            +     L+ +  KE GDL  + V GC+++   +E+    P V+   G    +   ELL+
Sbjct: 64  MI-----LEFAERKEEGDLKKLFVMGCLSERYLKELAIEIPQVDKFYGK---FNWKELLQ 115

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
               G+   D  Y      ER       Y       A+L I EGCD+ C++C +P   G 
Sbjct: 116 D--LGQTYHDELY-----IERTLTTPRHY-------AYLKISEGCDRKCSYCAIPIITGR 161

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGL 260
            IS+ + +++DE R L+  GV E  ++ Q +  +   G+D  +K    +L+  +S+I G+
Sbjct: 162 HISKPIDEILDEVRYLVSQGVKEFQVIAQELTYY---GVDLYKKQMLPELIERISDIPGV 218

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
             +R   ++P      L +   + D +  Y+ + +Q  SD++L+ M R+ T  +  ++I+
Sbjct: 219 EWIRLHYAYPAHFPTDLFRVMRERDNVCKYMDIALQHISDKMLRLMRRQVTKEDTYKLIE 278

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           + R   P I + +  +VG PGET++DF    + V K+ + +  +F YS   GT  +   E
Sbjct: 279 QFRKEVPGIHLRTTLMVGHPGETEEDFEELKEFVRKVRFDRMGAFAYSEEEGTYAAEAYE 338

Query: 381 -QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWL 435
             + + VK  RL  L    +      + A +G+ ++++I++   E    +GR    SP +
Sbjct: 339 DSIPQEVKQARLDELMDIQQGISAELSAAKIGKQMKIIIDR--LEGDYYIGRTEFDSPEV 396

Query: 436 QSVVL---NSKNHNIGDIIKVRITDVKISTLYGELV 468
              VL   + K   IG   +V + D     LY +++
Sbjct: 397 DPEVLINSSEKELEIGQFYQVEVIDADDFDLYAKVI 432


>gi|208434231|ref|YP_002265897.1| hypothetical protein HPG27_264 [Helicobacter pylori G27]
 gi|208432160|gb|ACI27031.1| hypothetical protein HPG27_264 [Helicobacter pylori G27]
          Length = 418

 Score =  137 bits (344), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 110/395 (27%), Positives = 188/395 (47%), Gaps = 45/395 (11%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF--FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           ++ + K++GC+ N++D+  M +    FS   E      +AD+IV+N+C +   A   V S
Sbjct: 2   KKVYFKTFGCRTNLFDTQVMGENLKDFSATLEE----QEADIIVINSCTVTNGADSAVRS 57

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-E 141
           +  ++  L         D  V+  GC  + +G+E+  +   +  V G     ++  LL E
Sbjct: 58  YAKKMARL---------DKEVLFTGCGVKTQGKELFEKG-FLKGVFGHDNKEKINALLQE 107

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           + RF       D ++E+K    ++V     + R   AF+ IQEGCD  C +C++P  RG 
Sbjct: 108 KKRFF-----IDDNLENKHLDTTMVSEFVGKTR---AFIKIQEGCDFDCNYCIIPSVRGR 159

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW---RGKGLDGEKCTFSDLLYSLSEIK 258
             S    +++++   L   GV E+ L G NV ++   RG  +       + L+  LS+I 
Sbjct: 160 ARSFEERKILEQVGLLCSKGVQEVVLTGTNVGSYGKDRGSNI-------ARLIKKLSQIA 212

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           GL R+R  +  P  + +       + D L  +LH+ +Q   D +L+ MNRR+     R++
Sbjct: 213 GLKRIRIGSLEPNQI-NDEFLELLEEDFLEKHLHIALQHSHDFMLERMNRRNRTKSDREL 271

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           +++I S   + AI +DFIVG PGE+   F      ++ +       F YS R  TP S M
Sbjct: 272 LEKIAS--KNFAIGTDFIVGHPGESKSVFEKAFKNLESLPLTHIHPFIYSKRKDTPSSLM 329

Query: 379 LEQVDENVKAERLLCLQ-------KKLREQQVSFN 406
            + V      +RL  ++       K  R+ Q+  N
Sbjct: 330 HDSVSLEDSKKRLNAIKDLIFHKNKAFRQLQLKLN 364


>gi|126733291|ref|ZP_01749038.1| hypothetical protein RCCS2_04029 [Roseobacter sp. CCS2]
 gi|126716157|gb|EBA13021.1| hypothetical protein RCCS2_04029 [Roseobacter sp. CCS2]
          Length = 506

 Score =  137 bits (344), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 112/407 (27%), Positives = 183/407 (44%), Gaps = 49/407 (12%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC   + DS R+     ++GY        A+ +++NTC   + A  +    +G     
Sbjct: 72  SLGCPKALVDSERILTRLRAEGYAISPDYAGAEAVIVNTCGFLDSAKAESLDAIGEA--- 128

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               ++E G   V+V GC+  AE + I    P +  V GP  Y             ++V+
Sbjct: 129 ----LQENGK--VIVTGCLG-AEPDYIRDHHPQILAVTGPHQY-------------EQVL 168

Query: 151 DTDYS----VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           D  ++      D F  L    G     R  + +L I EGC+  C FC++P  RG   SR 
Sbjct: 169 DAVHANVPPAPDPFIDLLPASGVSLTPRHYS-YLKISEGCNHKCKFCIIPDMRGRLASRP 227

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE-----------KCTFSDLLYSLS 255
              V+ EA KL+D GV E+ ++ Q+ +A+   GLD +           +   +DL   L 
Sbjct: 228 AHAVLREAEKLVDAGVKELLVISQDTSAY---GLDRKYDLSPWKDGQVRSHITDLTRELG 284

Query: 256 EIKGLVRLRYTTSHP--RDMSDCLI-KAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
           ++   VRL Y   +P  RD+   +   A+G    ++PYL +P Q     +L+ M R    
Sbjct: 285 QLGAWVRLHYVYPYPYVRDLIPIMADPANG----VLPYLDIPFQHSHPDVLRRMARPAAG 340

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
            +    I   R+  PDI + S FIVG+PGET+ +F+  +D +D+    +   F+Y    G
Sbjct: 341 AKTLDEIAAWRAQCPDITLRSTFIVGYPGETEAEFQHLLDWLDEAQLDRVGCFQYENVAG 400

Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419
              + +   V   VK  R      K +    +  +A VG+ +EV+++
Sbjct: 401 ARSNALPNHVAAEVKQNRWDRFMAKAQAISEAKLEAKVGRTLEVIVD 447


>gi|261837731|gb|ACX97497.1| hypothetical protein KHP_0283 [Helicobacter pylori 51]
          Length = 418

 Score =  137 bits (344), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 108/393 (27%), Positives = 188/393 (47%), Gaps = 41/393 (10%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF--FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           ++ + K++GC+ N++D+  M +    FS   E      +AD+I++N+C +   A   V S
Sbjct: 2   KKVYFKTFGCRTNLFDTQVMGENLKDFSATLEE----QEADIIIINSCTVTNGADSAVRS 57

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-E 141
           +  ++  L            V+  GC  + +G+E+  +  ++  V G     ++  LL E
Sbjct: 58  YAKKMARLNKE---------VLFTGCGVKTQGKELFEKG-LLKGVFGHDNKEKINALLQE 107

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           + RF       D ++E+K    ++V     + R   AF+ IQEGCD  C +C++P  RG 
Sbjct: 108 KKRFF-----IDDNLENKHLDTTMVSEFVGKTR---AFIKIQEGCDFDCNYCIIPSVRGR 159

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-RGKGLDGEKCTFSDLLYSLSEIKGL 260
             S    +++++   L   GV E+ L G NV ++ + KG        + L+  LS+I GL
Sbjct: 160 ARSFEERKILEQVGLLCSKGVQEVVLTGTNVGSYGKDKG-----SNIARLIKKLSQIAGL 214

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R  +  P  + +       + D L  +LH+ +Q   D +L+ MNRR+     R++++
Sbjct: 215 KRIRIGSLEPNQI-NDEFLELLEEDFLEKHLHIALQHSHDFMLERMNRRNRTKSDRELLE 273

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
            I S   + AI +DFIVG PGE++  F      ++ +       F YS R  TP S M +
Sbjct: 274 VIAS--KNFAIGTDFIVGHPGESESVFEEAFKNLESLPLTHIHPFIYSKRKDTPSSLMTD 331

Query: 381 QVDENVKAERLLCLQ-------KKLREQQVSFN 406
            V      +RL  ++       K  R+ Q+  N
Sbjct: 332 SVSLEDSKKRLNAIKDLILHKNKAFRQLQLKLN 364


>gi|254453567|ref|ZP_05067004.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Octadecabacter
           antarcticus 238]
 gi|198267973|gb|EDY92243.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Octadecabacter
           antarcticus 238]
          Length = 431

 Score =  137 bits (344), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 109/375 (29%), Positives = 172/375 (45%), Gaps = 45/375 (12%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC   + DS R+     ++GY        AD +++NTC   + A  +    +G   N 
Sbjct: 3   SLGCPKALVDSERILTRLRAEGYAISPDYAGADAVIVNTCGFLDSAKAESLDAIGEALN- 61

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
           +N +        V+V GC+  AE + I    P +  V GP  Y             ++V+
Sbjct: 62  ENGK--------VIVTGCLG-AEPDYIREHHPRILAVTGPHQY-------------EQVL 99

Query: 151 DTDYSV----EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           D  ++      D F  L    G     R  + +L I EGC+  C FC++P  RG   SR 
Sbjct: 100 DAVHAAVPPSPDPFIDLLPASGVSLTPRHYS-YLKISEGCNHKCKFCIIPDMRGKLQSRP 158

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-------GEKCTFSDLLYSLSEIKG 259
              V+ EA KL++NGV E+ ++ Q+ +A+   G+D       G +   +DL   L  + G
Sbjct: 159 AHAVLREAEKLVENGVRELLVISQDTSAY---GVDIKHAEDRGHRAHITDLARDLGSLGG 215

Query: 260 ----LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
                VRL Y   +P       + A G   +++PYL +P Q  S  +L+ M R   A + 
Sbjct: 216 DTKPWVRLHYVYPYPHVRQLIPLMADG---LILPYLDIPFQHASTDVLRRMARPAAAAKT 272

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
              I   R++ PDI + S FIVG+PGET+ +F+  +D +D+    +   F+Y    G   
Sbjct: 273 LDEITAWRAICPDITLRSTFIVGYPGETEAEFQVLLDWMDEAQLDRVGCFQYENVAGARS 332

Query: 376 SNMLEQVDENVKAER 390
           + + + V   VK ER
Sbjct: 333 NALPDHVPAEVKQER 347


>gi|85706248|ref|ZP_01037343.1| RNA modification enzyme, MiaB-family protein [Roseovarius sp. 217]
 gi|85669412|gb|EAQ24278.1| RNA modification enzyme, MiaB-family protein [Roseovarius sp. 217]
          Length = 458

 Score =  137 bits (344), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 123/450 (27%), Positives = 199/450 (44%), Gaps = 39/450 (8%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC   + DS R+     ++GY        AD +++NTC   + A  +    +G   + 
Sbjct: 33  SLGCPKALVDSERILTRLRAEGYGISADYAGADAVIVNTCGFLDSAKAESLEAIGEALS- 91

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
           +N R        V+V GC+  AE   I    P V  V GP  Y ++ + +  A       
Sbjct: 92  ENGR--------VIVTGCLG-AEPAYITGVHPRVLAVTGPHQYEQVLDAVHLAV------ 136

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
                  D F  L    G     R  + +L I EGC+  C FC++P  RG   SR    V
Sbjct: 137 ---PPSPDPFIDLLPASGVSLTPRHYS-YLKISEGCNHKCKFCIIPDMRGKLQSRPAHAV 192

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLD-------GEKCTFSDLLYSLSEIKGLVRL 263
           + EA KL+++GV E+ ++ Q+ +A+   G+D       G +   +DL   L  +   VRL
Sbjct: 193 IREAAKLVESGVKELLVISQDTSAY---GVDIRHAEERGHRAHITDLARDLGSLGAWVRL 249

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
            Y   +P       + A G   +++PYL +P Q     +L+ M R   A      I   R
Sbjct: 250 HYVYPYPHVRDLIPLMAEG---LVLPYLDIPFQHAHPEVLRRMARPAAAARTLDEIAAWR 306

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              P+IA+ S FIVG+PGET+ +F+  +D +D+    +   F+Y    G   + + + V 
Sbjct: 307 RDCPEIALRSTFIVGYPGETEAEFQVLLDWLDEAQLDRVGCFQYENVAGARSNALPDHVA 366

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVL---IEKHGKEKGKLVGRSPWLQSVVL 440
             VK ER     +K +    +   A VGQ +EV+   I+  G    +    +P +   + 
Sbjct: 367 AEVKQERWDRFMEKAQAISEAKLAAKVGQRMEVIVDEIDADGIATCRTKADAPEIDGNLF 426

Query: 441 ---NSKNHNIGDIIKVRITDVKISTLYGEL 467
               ++   +GDI+ V + +     L+G L
Sbjct: 427 IDEGTEGIAVGDIVTVVVDEAGEYDLWGRL 456


>gi|283850464|ref|ZP_06367752.1| RNA modification enzyme, MiaB family [Desulfovibrio sp. FW1012B]
 gi|283574035|gb|EFC22007.1| RNA modification enzyme, MiaB family [Desulfovibrio sp. FW1012B]
          Length = 448

 Score =  137 bits (344), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 112/387 (28%), Positives = 173/387 (44%), Gaps = 46/387 (11%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+RF + + GC++N Y+S  + + +   G  R +    ADL+VL +C +  +A  +    
Sbjct: 18  PKRFCLVTLGCKVNQYESRALAEAWLGSGLVRTDDPAAADLVVLCSCAVTARAEAEG--- 74

Query: 84  LGRIRNLKNSRIKEGGDLL-VVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL--- 139
               R L  + ++   D   VVV GC A                 V P  +  L  L   
Sbjct: 75  ----RRLARNLVRAARDAARVVVTGCAA----------------TVSPDAFAGLGALAVP 114

Query: 140 ----LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
               L R  FG          E  F  L++   GY+R R   A + +Q+GC   C++C+V
Sbjct: 115 DKARLARDPFGPHTAAPRAPGE--FPDLAVT--GYDRAR---ALVKVQDGCSHGCSYCIV 167

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL- 254
           P  RG  +SR L+ V+ E R+L+  G  EI L G N+  + G+ L      F DL+  L 
Sbjct: 168 PAARGPSVSRPLADVLAEVRRLLAAGHREIGLTGINLGHY-GRDL-APAMDFWDLVADLD 225

Query: 255 ----SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
                E  G  RLR  +  P  ++   +       ++ P+LH+ +QS    +L +M RR 
Sbjct: 226 AALAPEHAGTARLRLGSLDPAMLTGRGLAVLAGSRLVCPHLHISLQSADPAVLTAMGRRP 285

Query: 311 TAYEYRQ-IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369
              E     +D I    P + +  D + GFPGE++  F AT   +D +    A  F YS 
Sbjct: 286 GDAEAVSFFVDSISREWPAMGLGLDLLTGFPGESEAAFAATAAFLDGLPATYAHVFPYSR 345

Query: 370 RLGTPGSNMLEQVDENVKAERLLCLQK 396
           R GT  + +  Q+   VKA R   L++
Sbjct: 346 RPGTRAAALPGQLPGPVKAGRARLLRE 372


>gi|259419341|ref|ZP_05743258.1| conserved hypothetical protein [Silicibacter sp. TrichCH4B]
 gi|259345563|gb|EEW57417.1| conserved hypothetical protein [Silicibacter sp. TrichCH4B]
          Length = 467

 Score =  137 bits (344), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 123/464 (26%), Positives = 211/464 (45%), Gaps = 57/464 (12%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC   + DS R+     ++GY        AD +++NTC   + A  +    +G     
Sbjct: 33  SLGCPKALVDSERILTRLRAEGYGISADYAGADAVIVNTCGFLDSAKAESLEAIGEA--- 89

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               +KE G   V+V GC+  AE + I    P +  V GP  Y ++ + + +A       
Sbjct: 90  ----LKENGK--VIVTGCLG-AEPDYIREHHPRILAVTGPHQYEQVLDAVHQAV------ 136

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
                  D F  L    G     R  + +L I EGC+  C FC++P  RG   SR    V
Sbjct: 137 ---PPSPDPFVDLLPATGVSLTPRHFS-YLKISEGCNHKCKFCIIPDMRGKLASRPGHAV 192

Query: 211 VDEARKLIDNGVCEITLLGQN-----------VNAWRGKGLDGE-KCTFSDLLYSLSEIK 258
           + EA KL+  GV E+ ++ Q+           VN W+    DGE +   +DL  +L E+ 
Sbjct: 193 LREAEKLVGAGVRELLVISQDTSAYGLDRKYDVNPWK----DGEIRSHITDLSRALGELA 248

Query: 259 G----LVRLRYTTSHP--RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
                 +RL Y   +P  R+M   +   +   + ++PYL +P Q     +L+ M R   A
Sbjct: 249 PADELWIRLHYVYPYPHVREMIPLMADPN---NAVLPYLDIPFQHAHPDVLRRMARPAAA 305

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
            +    I   R + PD+ + S FIVG+PGET+ +F+  +D +D+    +   FKY    G
Sbjct: 306 AKTLDEIRAWRDICPDMTLRSTFIVGYPGETETEFQHLLDWMDEAQLDRVGCFKYENVDG 365

Query: 373 TPGSNMLEQVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVL---IEKHGKEKG 426
              +++ + V + VK    ER +   + + E +++   A VGQ ++V+   I++ G    
Sbjct: 366 ARSNDLPDHVADEVKQDRWERFMAKAQAISEAKLA---AKVGQTLQVIVDDIDEDGIATC 422

Query: 427 KLVGRSPWLQSVVL---NSKNHNIGDIIKVRITDVKISTLYGEL 467
           +    +P +   +     ++  ++GD++ V + +     L+G L
Sbjct: 423 RTKADAPEIDGNLFIDDGTEGLSVGDLVTVEVDEAGEYDLWGAL 466


>gi|317484640|ref|ZP_07943543.1| MiaB family RNA modification enzyme [Bilophila wadsworthia 3_1_6]
 gi|316924114|gb|EFV45297.1| MiaB family RNA modification enzyme [Bilophila wadsworthia 3_1_6]
          Length = 465

 Score =  137 bits (344), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 105/394 (26%), Positives = 175/394 (44%), Gaps = 42/394 (10%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
            P  F + ++GC++N Y+S  + + +        ++  +AD+I+LNTC +   A      
Sbjct: 4   APWTFCILTFGCKVNQYESQSVREAWQRMDGAETDAPAEADVILLNTCAVTANAVTDARQ 63

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            + R++       +E   + VV+AGC A+   ++ L   P V  VV      RL +    
Sbjct: 64  AVRRLQ-------REAPGVPVVIAGCAAEVARKQ-LAALPGVLRVVEQDHKSRLLDAPPL 115

Query: 143 ARFGKRVVDTDYSVEDK--------------FERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
             F +    +                     F    I   G+ R R V   L +Q+GC  
Sbjct: 116 VLFAEEAAGSATPFPSSPAEAAARAATRDRTFPPFHI--DGFRRARPV---LKVQDGCSH 170

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT-F 247
            C +C+VP TRG   SR     + E R+L++ G  EI + G N+   R   +  E C  F
Sbjct: 171 GCAYCIVPLTRGPARSRPPKDCLAEMRRLLEAGYREIMISGINL---RQYAMRDEGCRDF 227

Query: 248 SDLL----------YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQS 297
            DLL          +         R R ++  P  +++  I    +  ++ P+LHL +QS
Sbjct: 228 WDLLSYLDRELAPEWGSGARPDPARFRISSVEPAQLTERGIATLAETSMVCPHLHLSLQS 287

Query: 298 GSDRILKSMNRRH-TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
           GS  +LK+M R H T       ++ +  + P   + +D ++GFPGET+     T+++V  
Sbjct: 288 GSADVLKAMRRGHYTPEALLSAVEGVAKLWPRFGLGADILMGFPGETEAHVLETLEVVRS 347

Query: 357 IGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER 390
           +    A  F YS R GT  + + +QV + V+ ER
Sbjct: 348 LPLTYAHVFPYSARPGTVAAELPDQVGKAVRQER 381


>gi|212703826|ref|ZP_03311954.1| hypothetical protein DESPIG_01874 [Desulfovibrio piger ATCC 29098]
 gi|212672794|gb|EEB33277.1| hypothetical protein DESPIG_01874 [Desulfovibrio piger ATCC 29098]
          Length = 416

 Score =  136 bits (343), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 110/389 (28%), Positives = 181/389 (46%), Gaps = 32/389 (8%)

Query: 56  VNSMDDADLIVLNTCHIREKAA-EKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG 114
           V  M  A L+ +NTC   E A  E + S L  +  L   + +     L+ VAGC+    G
Sbjct: 17  VEHMGRARLVFINTCGFIEPAVRESIRSILDAVERLGRCKRRP----LLAVAGCMVGRYG 72

Query: 115 -EEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRK 173
            +++    P V++ +        P ++       R      +      RL      Y   
Sbjct: 73  VKDLAADLPEVDLWLPTGELENWPVMV-------REALGLPAAPAAPGRLLSTGPSY--- 122

Query: 174 RGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVN 233
               A+L + EGC   C FC +P  RG   S   + + +EAR L+  GV E+ L+ Q++ 
Sbjct: 123 ----AWLKVGEGCRHKCAFCTIPSIRGPLRSVPAADLREEARGLLAGGVRELVLVAQDLT 178

Query: 234 AWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV-LMPYLH 292
           +W G   D  + +   LL  L  +  L  LR    +P  ++  +++   +    L+PY  
Sbjct: 179 SW-GSDFDTPQ-SLPHLLDELLPLDRLTWLRLLYLYPSGVTPEMLRYMREAGPQLLPYFD 236

Query: 293 LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352
           +P+Q     +L  M R   A + R+++DR+R   P+ A+ + FIVG+PGET++ F+    
Sbjct: 237 IPLQHAHPEVLTRMGRPF-ANDPRRVVDRVREALPEAALRTTFIVGYPGETEEHFQTLCR 295

Query: 353 LVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER---LLCLQKKLREQQVSFNDAC 409
            V++  +     F Y    GTP + M +QV   V+ ER   L+ +Q ++ EQQ+      
Sbjct: 296 FVEETRFRHLGVFAYQAEEGTPAAAMPDQVPMEVREERRATLMEIQAEISEQQLQ---ES 352

Query: 410 VGQIIEVLIE-KHGKEKGKLVGRSPWLQS 437
           VGQ + VL++  H +  G  VGR  W Q+
Sbjct: 353 VGQTMPVLVDAPHDEWPGLHVGRV-WFQA 380


>gi|15644913|ref|NP_207083.1| hypothetical protein HP0285 [Helicobacter pylori 26695]
 gi|2501536|sp|P56130|Y285_HELPY RecName: Full=Putative methylthiotransferase HP_0285
 gi|2313381|gb|AAD07353.1| conserved hypothetical protein [Helicobacter pylori 26695]
          Length = 418

 Score =  136 bits (343), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 109/395 (27%), Positives = 187/395 (47%), Gaps = 45/395 (11%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF--FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           ++ + K++GC+ N++D+  M +    FS   E      +AD+I++N+C +   A   V S
Sbjct: 2   KKVYFKTFGCRTNLFDTQVMSENLKDFSTTLEE----QEADIIIINSCTVTNGADSAVRS 57

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-E 141
           +  ++  L         D  V+  GC  + +G+E+  +   +  V G     ++  LL E
Sbjct: 58  YAKKMARL---------DKEVLFTGCGVKTQGKELFEKG-FLKGVFGHDNKEKINALLQE 107

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           + RF       D ++E+K    ++V     + R   AF+ IQEGCD  C +C++P  RG 
Sbjct: 108 KKRFF-----IDDNLENKHLDTTMVSEFVGKTR---AFIKIQEGCDFDCNYCIIPSVRGR 159

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW---RGKGLDGEKCTFSDLLYSLSEIK 258
             S    +++++   L   GV E+ L G NV ++   RG  +       + L+  LS+I 
Sbjct: 160 ARSFEERKILEQVGLLCSKGVQEVVLTGTNVGSYGKDRGSNI-------ARLIKKLSQIA 212

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           GL R+R  +  P  + +       + D L  +LH+ +Q   D +L+ MNRR+     R++
Sbjct: 213 GLKRIRIGSLEPNQI-NDEFLELLEEDFLEKHLHIALQHSHDLMLERMNRRNRTKSDREL 271

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           ++ I S   + AI +DFIVG PGE+   F      ++ +       F YS R  TP S M
Sbjct: 272 LETIAS--KNFAIGTDFIVGHPGESGSVFEKAFKNLESLPLTHIHPFIYSKRKDTPSSLM 329

Query: 379 LEQVDENVKAERLLCLQ-------KKLREQQVSFN 406
            + V      +RL  ++       K  R+ Q+  N
Sbjct: 330 TDSVSLEDSKKRLNAIKDLIFHKNKAFRQLQLKLN 364


>gi|210635803|ref|ZP_03298621.1| hypothetical protein COLSTE_02560 [Collinsella stercoris DSM 13279]
 gi|210158308|gb|EEA89279.1| hypothetical protein COLSTE_02560 [Collinsella stercoris DSM 13279]
          Length = 238

 Score =  136 bits (343), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 71/208 (34%), Positives = 116/208 (55%), Gaps = 1/208 (0%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
           + +Q+GC+  C++C+V   RG E S  +  V+D+ R+    G+ E+ L G N+ A+ G  
Sbjct: 30  IKVQDGCNNRCSYCIVWKARGPERSVPVEAVLDQVREAERAGIPEVVLTGVNLGAYDGVD 89

Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAH-GDLDVLMPYLHLPVQSG 298
                    +LL  +     + ++R ++  P D+ + LI A       + P+LHLP+QSG
Sbjct: 90  ARDAHVEIDELLNIILRETDIPQVRLSSLEPMDVDERLIDAMVAGGPRVAPFLHLPLQSG 149

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
               L+ MNR +TA +Y   +  IR+  P  +IS D I GFPGETDD+F  ++ L +++G
Sbjct: 150 CSATLERMNRPYTAEQYEATVAMIRAKLPAASISCDIIAGFPGETDDEFAQSLALCERVG 209

Query: 359 YAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           +++   F+YS R GTP +   +QV   V
Sbjct: 210 FSRMHVFRYSARPGTPAAEAADQVPPEV 237


>gi|326429727|gb|EGD75297.1| cdk5 regulatory subunit associated protein 1 [Salpingoeca sp. ATCC
           50818]
          Length = 530

 Score =  136 bits (343), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 97/352 (27%), Positives = 164/352 (46%), Gaps = 47/352 (13%)

Query: 28  FVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRI 87
           +++++GC  N  D   M  +  + GYE V     ADL +LN+C ++  + +         
Sbjct: 56  YIRTWGCSHNTSDGEYMAGVLSAAGYEIVKDKMTADLWILNSCTVKTPSEDTF------- 108

Query: 88  RNLKNSRIKEGGDL--LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
               N+ I+EG  L   +V+AGCVAQA+    + +      +VG     R+ E++E    
Sbjct: 109 ----NNAIREGQKLGKKLVLAGCVAQAQPRGKMTQG---LSIVGIHQIDRVLEVVEETLQ 161

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYN------RKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           G+ V            + S   GG        R+  +   + I  GC   CT+C   + R
Sbjct: 162 GRTV--------RLLSKKSSGAGGAPLAMPKIRRNELIEIIPINTGCLNQCTYCKTKHAR 213

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI-- 257
           G   S    ++V   R+++  GV EI L  ++   + G+  D    T  +LL+ + E+  
Sbjct: 214 GQLNSYPADEIVARVRQVVAEGVVEIWLTSEDTGTY-GRDRDD---TIVNLLWKIIEVLP 269

Query: 258 ------KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
                  G+    Y   H  +M+  L         +  +LH+P+Q+ SD +L +M R + 
Sbjct: 270 DGVMLRVGMTNPPYILEHLEEMAKILNHPR-----VYAFLHIPIQAASDAVLTTMKREYN 324

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
             E+  I+D +R   P++ I++D I GFPGET++DF+ TMDL +K  +   F
Sbjct: 325 CEEFCHIVDFLRERVPNVTIATDIICGFPGETEEDFQETMDLCEKYKFPSLF 376


>gi|146277094|ref|YP_001167253.1| ribosomal protein S12 methylthiotransferase [Rhodobacter
           sphaeroides ATCC 17025]
 gi|145555335|gb|ABP69948.1| MiaB-like tRNA modifying enzyme YliG [Rhodobacter sphaeroides ATCC
           17025]
          Length = 463

 Score =  136 bits (343), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 111/398 (27%), Positives = 179/398 (44%), Gaps = 39/398 (9%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC   + DS R+     ++GY        AD +++NTC   + A  +    +G     
Sbjct: 42  SLGCPKALVDSERILTRLRAEGYAISPDYAGADAVIVNTCGFLDSAKAESLEAIGEA--- 98

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               ++E G   V+V GC+  AE + I    P V  V GP  Y             ++V+
Sbjct: 99  ----LRENGR--VIVTGCLG-AEPDYITGAHPKVLAVTGPHQY-------------EQVL 138

Query: 151 DTDY----SVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           D  +       D F  L    G     R  + +L I EGC+  C FC++P  RG  +SR 
Sbjct: 139 DAVHGAVPPAPDPFVDLLPATGVRLTPRHFS-YLKISEGCNHSCRFCIIPDMRGRLVSRP 197

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNA----WRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
              V+ EA KL++ GV E+ ++ Q+ +A    W+G      +     L   L ++   VR
Sbjct: 198 ERAVLREAEKLVEAGVRELLVISQDTSAYGTDWKGP----VRFPILPLARELGQLGAWVR 253

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           L Y   +P       + A G   +++PYL +P Q     +LK M R   A      I   
Sbjct: 254 LHYVYPYPHVRELIPLMAEG---LILPYLDIPFQHAHPEVLKRMARPAAAARTLDEIAAW 310

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R   PDI + S FIVG+PGET+++F+  +D +D+    +   F+Y    G   + + + V
Sbjct: 311 RRDCPDITLRSTFIVGYPGETEEEFQTLLDWLDEAQLDRVGCFQYENVAGARSNALPDHV 370

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
              +K ER     +K +    +   A +GQ +EV++++
Sbjct: 371 APELKQERWERFMQKAQAISEAKLAARIGQRLEVIVDE 408


>gi|297559628|ref|YP_003678602.1| RNA modification enzyme, MiaB family [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296844076|gb|ADH66096.1| RNA modification enzyme, MiaB family [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
          Length = 480

 Score =  136 bits (343), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 122/472 (25%), Positives = 207/472 (43%), Gaps = 49/472 (10%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAE-KVYSFLGRIRN 89
           + GC  N  DS  +     + G++ V    +AD+ ++NTC   + A +  + + L    N
Sbjct: 11  TLGCARNEVDSEELAGRLSAGGWDLVEGDTEADVTIVNTCGFIDAAKQDSIETLLEAAEN 70

Query: 90  LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149
                   GG   VV AGC+A+  G E+ +  P   V+ G   Y  + + L+    G+ +
Sbjct: 71  --------GG--RVVAAGCMAERYGSELAQALPEAQVI-GFDDYAAITDRLDDVVAGRTL 119

Query: 150 VDTD---------YSVEDKFERLSIVDGGYN-------------------RKR---GVTA 178
           V  D          S  ++    + V G  +                   R+R   G  A
Sbjct: 120 VPHDPRDRRTLLPISPAERDASQAHVPGHASFAESAGAEGTELPYRASVPRRRLVGGPVA 179

Query: 179 FLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK 238
            L I  GCD+ CTFC +P  RG  +SR    +V EA  L   GV E+ L+ +N  ++ GK
Sbjct: 180 NLKIASGCDRRCTFCAIPTFRGAYLSRRPDDIVREAEWLASEGVREVFLVSENSTSY-GK 238

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
            L G+      LL  L+ ++GL R+R +   P ++   L+        ++PY  L  Q  
Sbjct: 239 DL-GDVRALEKLLPRLAAVEGLERVRVSYLQPAEVRPGLVDVLTGTPGVVPYFDLSFQHA 297

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           S  +L+ M R      + +++D +R   P+    S+FIVGFPGET+ +F   +  + +  
Sbjct: 298 SGTLLRRMRRFGDRERFLELLDTVRKRAPEAGSRSNFIVGFPGETEAEFEDLVSFLSEAR 357

Query: 359 YAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI 418
                 F YS   GT       ++ + V AER+  L +   E      +  +G  + VL+
Sbjct: 358 LDAIGVFGYSDEEGTEAFGHEGKLPDEVVAERVDRLNRLSEELMTQRAEERIGSEVTVLV 417

Query: 419 E---KHGKEKGKLVGRSPWLQ-SVVLNSKNHNIGDIIKVRITDVKISTLYGE 466
           E   + G  +G+   ++P +  S +L  +   +GD+++  +     + L  E
Sbjct: 418 ETVLEDGAYEGRAEHQAPEVDGSTILYGEGLAVGDLVRATVIQSAGADLIAE 469


>gi|114766732|ref|ZP_01445670.1| MiaB-like Radical SAM protein [Pelagibaca bermudensis HTCC2601]
 gi|114541051|gb|EAU44107.1| MiaB-like Radical SAM protein [Roseovarius sp. HTCC2601]
          Length = 454

 Score =  136 bits (343), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 119/444 (26%), Positives = 193/444 (43%), Gaps = 29/444 (6%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC   + DS R+     ++GY        AD +++NTC   + A  +    +G   N 
Sbjct: 34  SLGCPKALVDSERILTRLRAEGYGISPDYAGADAVIVNTCGFLDSAKAESLEAIGEALN- 92

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
           +N +        V+V GC+  AE + I    P V  V GP  Y ++ + +  A       
Sbjct: 93  ENGK--------VIVTGCLG-AEPDYITGAHPKVLAVTGPHQYEQVLDAVHGAV------ 137

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
                  D F  L    G     R  + +L I EGC+  C FC++P  RG   SR    V
Sbjct: 138 ---PPAPDPFVDLLPSSGVKLTPRHYS-YLKISEGCNHACKFCIIPDMRGKLASRPHRAV 193

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYTTSH 269
           + EA KL++ GV E+ ++ Q+ +A+     D  EK     L   L  +   VR+ Y   +
Sbjct: 194 MREAEKLVEAGVRELLVISQDTSAYGTDWKDRPEKAPIQSLARDLGSLGAWVRMHYVYPY 253

Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329
           P       + A G +   +PYL +P Q      L+ M R   A      I   R+V P+I
Sbjct: 254 PHVREMIPLMAEGGI---LPYLDIPFQHAHPDTLRRMARPAAAARTLDEIAAWRAVCPEI 310

Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAE 389
            + S FIVG+PGET+ +F+  +D +D+    +   F+Y    G   + + + V   VK E
Sbjct: 311 VLRSTFIVGYPGETEAEFQTLLDWMDEAQLDRVGCFQYENVAGARSNALPDHVPAEVKQE 370

Query: 390 RLLCLQKKLREQQVSFNDACVGQIIEVLIE--KHGKEKGKLVGRSPWLQSVVLNSKNH-- 445
           R     +K +    +   A VG  +EV+++  +      +    +P +   +   + H  
Sbjct: 371 RWDRFMEKAQAISEAKLAAKVGTRVEVIVDLVEDDAATCRTEADAPEIDGNLFIDEGHEA 430

Query: 446 -NIGDIIKVRITDVKISTLYGELV 468
            + GDI+ V + +     L+G L 
Sbjct: 431 LSPGDIVTVEVDEAGEYDLWGRLA 454


>gi|317179320|dbj|BAJ57108.1| hypothetical protein HPF30_1011 [Helicobacter pylori F30]
          Length = 418

 Score =  136 bits (343), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 108/395 (27%), Positives = 188/395 (47%), Gaps = 45/395 (11%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF--FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           ++ + K++GC+ N++D+  M +    FS   E      +AD+I++N+C +   A   V S
Sbjct: 2   KKVYFKTFGCRTNLFDTQVMGENLKDFSATLEE----QEADIIIINSCTVTNGADSAVRS 57

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-E 141
           +  ++  L            V+  GC  + +G+E+  +  ++  V G     ++  LL E
Sbjct: 58  YAKKMARLNKE---------VLFTGCGVKTQGKELFEKG-LLKGVFGHDNKEKINALLQE 107

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           + RF       D ++E+K    ++V     + R   AF+ IQEGCD  C +C++P  RG 
Sbjct: 108 KKRFF-----IDDNLENKHLDTTMVSEFVGKTR---AFIKIQEGCDFDCNYCIIPSVRGR 159

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW---RGKGLDGEKCTFSDLLYSLSEIK 258
             S    +++++   L   GV E+ L G NV ++   RG  +       + L+  LS+I 
Sbjct: 160 ARSFEERKILEQVGLLCSKGVQEVVLTGTNVGSYGKDRGSNI-------ARLIKKLSQIA 212

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           GL R+R  +  P  + +       + D L  +LH+ +Q   D +L+ MNRR+     R++
Sbjct: 213 GLKRIRIGSLEPNQI-NDEFLELLEEDFLEKHLHIALQHSHDFMLEKMNRRNRTKSDREL 271

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           ++ I S   + AI +DFIVG PGE++  F      ++ +       F YS R  TP S M
Sbjct: 272 LEVIAS--KNFAIGTDFIVGHPGESESVFEEAFKNLESLPLTHIHPFIYSKRKDTPSSLM 329

Query: 379 LEQVDENVKAERLLCLQ-------KKLREQQVSFN 406
            + V      +RL  ++       K  R+ Q+  N
Sbjct: 330 TDSVSLEDSKKRLNAIKDLILHKNKAFRQLQLKLN 364


>gi|152993771|ref|YP_001359492.1| tRNA modifying enzyme [Sulfurovum sp. NBC37-1]
 gi|238066610|sp|A6QCC6|RIMO_SULNB RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|151425632|dbj|BAF73135.1| tRNA modifying enzyme [Sulfurovum sp. NBC37-1]
          Length = 439

 Score =  136 bits (343), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 106/416 (25%), Positives = 203/416 (48%), Gaps = 25/416 (6%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++  + S GC  N+ DS  M      + YE  +   +AD+I++NTC   + A E+    +
Sbjct: 5   KKLHLISLGCTKNLVDSEVMLGRL--KEYEITDDNTEADVIIVNTCGFIDAAKEES---I 59

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL--ER 142
             + NL + R KE  D ++V++GC+++   EE+ +  P +++  G   Y ++ EL+  ++
Sbjct: 60  NTVLNLHDER-KE--DSILVMSGCLSERYKEELQQDMPEIDIFTGVGDYEKIDELIASKQ 116

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           + F   V    Y   +   R+ I    Y+      A++ I EGC++ C+FC +P  +G  
Sbjct: 117 STFSPEV----YLATETSGRV-ITGSNYH------AYIKIAEGCNQACSFCAIPSFKGKL 165

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SRSLS +  E R L + G  + + + Q+ +++ G+ +D  K    DL+  +  I+G+  
Sbjct: 166 HSRSLSSIEKEVRMLAEQGYYDFSFISQDSSSY-GRDMDL-KDGLIDLIKVVEAIEGVRS 223

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
            R    +P   +  LI    D  +   Y  +P+Q   D +LK+M R     +  ++++ +
Sbjct: 224 ARILYLYPSTTTFELIDTIADSKIFQTYYDMPIQHIDDAVLKTMKRGFGEQKTIELLEHM 283

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           +S +P+  + +  I G PGE+   F      +++ G+ +  +F YS    T    M EQ+
Sbjct: 284 KS-KPNAFLRTSVIAGHPGESQRSFEKLCSFMEEFGFDRFNTFHYSNEETTTAYQM-EQI 341

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSV 438
            +++  ER   L +      +   +  VG+ +E++I+    E   L+   P   +V
Sbjct: 342 PQDIINERAEILGEIAERSTLRSLEKMVGKTVELVIDGESDEHEYLLSARPLQWAV 397


>gi|298736768|ref|YP_003729298.1| hypothetical protein HPB8_1277 [Helicobacter pylori B8]
 gi|298355962|emb|CBI66834.1| conserved hypothetical protein [Helicobacter pylori B8]
          Length = 418

 Score =  136 bits (343), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 106/387 (27%), Positives = 186/387 (48%), Gaps = 38/387 (9%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF--FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           ++ + K++GC+ N++D+  M +    FS   E      +AD+IV+N+C +   A   V S
Sbjct: 2   KKVYFKTFGCRTNLFDTQVMGENLKDFSATLEE----QEADIIVINSCTVTNGADSAVRS 57

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-E 141
           +  ++  L            V+  GC  + +G+E+  +   +  V G     ++  LL E
Sbjct: 58  YAKKMVRLNKE---------VLFTGCGVKTQGKELFEKG-FLKGVFGHDNKEKINALLQE 107

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           + RF       D ++E+K    ++V     + R   AF+ IQEGCD  C +C++P  RG 
Sbjct: 108 KKRFF-----IDDNLENKHLDTTMVSEFVGKTR---AFIKIQEGCDFDCNYCIIPSVRGR 159

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW---RGKGLDGEKCTFSDLLYSLSEIK 258
             S    +++++   L   GV E+ L G NV ++   RG  +       + L+  LS+I 
Sbjct: 160 ARSFEERKILEQVGLLCSKGVQEVVLTGTNVGSYGKDRGSNI-------ARLIKKLSQIA 212

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           GL R+R  +  P  + +       + D L  +LH+ +Q   D +L+ MNRR+     R++
Sbjct: 213 GLKRIRIGSLEPNQI-NDEFLELLEEDFLEKHLHIALQHSHDFMLERMNRRNRTKSDREL 271

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           +++I S   + AI +DFIVG PGE++  F      ++ +       F YS R  TP S M
Sbjct: 272 LEKIAS--KNFAIGTDFIVGHPGESESVFEKAFKNLESLPLTHIHPFIYSKRKDTPSSLM 329

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSF 405
            + V      +RL  ++  +  +  +F
Sbjct: 330 RDSVSLEDSKKRLNAIKDLILHKNKAF 356


>gi|254167353|ref|ZP_04874205.1| MiaB-like tRNA modifying enzyme, archaeal-type [Aciduliprofundum
           boonei T469]
 gi|197623616|gb|EDY36179.1| MiaB-like tRNA modifying enzyme, archaeal-type [Aciduliprofundum
           boonei T469]
          Length = 386

 Score =  136 bits (343), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 120/420 (28%), Positives = 201/420 (47%), Gaps = 50/420 (11%)

Query: 54  ERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAE 113
           E V+  ++AD+I++ TC + E    ++   L RI+ LK    K      +VV GC+  A 
Sbjct: 8   EIVSRPEEADVILIGTCVVIEHTENRM---LRRIKELKQYGKK------IVVYGCLPSA- 57

Query: 114 GEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRK 173
                 R  ++++ V P   +              +++ D S  D+   + I D      
Sbjct: 58  ------RKELLDMDVVPIATWEF-------EMAGEILNLDRSPMDE---VFIWDA----- 96

Query: 174 RGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVN 233
               A + I  GC   CT+C+    RG   SRS   ++   +K ++ G  EI +  Q+  
Sbjct: 97  ---VATIPIANGCLGQCTYCITRLARGRVKSRSKDWILRLVKKALEQGAVEIRISAQDTA 153

Query: 234 AWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD---MSDCLIKAHGDLDVLMPY 290
           A+ G+ +  E    ++L+ S++ I G   LR     PR+   +   LI A+ +  V   +
Sbjct: 154 AY-GRDIGTE---LAELINSITAIPGKFYLRVGMMEPRETLRILPELIDAYSNPKVYK-F 208

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
           LHLPVQSG D IL  MNR +   ++ +I+   R   P++ +S+D IVGFPGE D+ F  T
Sbjct: 209 LHLPVQSGDDEILHRMNRGYKVEDFIKIVRNFRQRFPEMTLSTDIIVGFPGENDESFENT 268

Query: 351 MDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK--AERLLCLQKKLREQQVSFNDA 408
           M L+ +I        ++SPR  TP           VK  +++L  L  +   ++    ++
Sbjct: 269 MKLIKEIKPEILNITRFSPRPKTPAYKWKRPSTNKVKGWSQKLTALHMENMHKRF---ES 325

Query: 409 CVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            +G+  +V++   GK +GK + RS   + VVL+  N  IG    +RIT  + S L G+++
Sbjct: 326 MLGKEFKVIVPSRGK-RGKYLARSQNYEPVVLD--NAVIGREYIIRITHYEKSHLVGKIL 382


>gi|238066634|sp|A4WRD4|RIMO_RHOS5 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
          Length = 457

 Score =  136 bits (342), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 111/398 (27%), Positives = 179/398 (44%), Gaps = 39/398 (9%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC   + DS R+     ++GY        AD +++NTC   + A  +    +G     
Sbjct: 36  SLGCPKALVDSERILTRLRAEGYAISPDYAGADAVIVNTCGFLDSAKAESLEAIGEA--- 92

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               ++E G   V+V GC+  AE + I    P V  V GP  Y             ++V+
Sbjct: 93  ----LRENGR--VIVTGCLG-AEPDYITGAHPKVLAVTGPHQY-------------EQVL 132

Query: 151 DTDY----SVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           D  +       D F  L    G     R  + +L I EGC+  C FC++P  RG  +SR 
Sbjct: 133 DAVHGAVPPAPDPFVDLLPATGVRLTPRHFS-YLKISEGCNHSCRFCIIPDMRGRLVSRP 191

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNA----WRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
              V+ EA KL++ GV E+ ++ Q+ +A    W+G      +     L   L ++   VR
Sbjct: 192 ERAVLREAEKLVEAGVRELLVISQDTSAYGTDWKGP----VRFPILPLARELGQLGAWVR 247

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           L Y   +P       + A G   +++PYL +P Q     +LK M R   A      I   
Sbjct: 248 LHYVYPYPHVRELIPLMAEG---LILPYLDIPFQHAHPEVLKRMARPAAAARTLDEIAAW 304

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R   PDI + S FIVG+PGET+++F+  +D +D+    +   F+Y    G   + + + V
Sbjct: 305 RRDCPDITLRSTFIVGYPGETEEEFQTLLDWLDEAQLDRVGCFQYENVAGARSNALPDHV 364

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
              +K ER     +K +    +   A +GQ +EV++++
Sbjct: 365 APELKQERWERFMQKAQAISEAKLAARIGQRLEVIVDE 402


>gi|86150946|ref|ZP_01069162.1| MiaB-like tRNA modifying enzyme [Campylobacter jejuni subsp. jejuni
           260.94]
 gi|315124495|ref|YP_004066499.1| MiaB-like tRNA modifying enzyme [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
 gi|85842116|gb|EAQ59362.1| MiaB-like tRNA modifying enzyme [Campylobacter jejuni subsp. jejuni
           260.94]
 gi|315018217|gb|ADT66310.1| MiaB-like tRNA modifying enzyme [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
          Length = 416

 Score =  136 bits (342), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 104/410 (25%), Positives = 194/410 (47%), Gaps = 55/410 (13%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + ++ F K++GC+ N+YD+  ++   + + YE +N  + A +IV+N+C +   A   + S
Sbjct: 1   MKEKVFFKTFGCRTNIYDTELLKS--YVKDYEIINDENKAQIIVVNSCTVTNGADSGIKS 58

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPI-----------VNVVVGPQ 131
           ++       N+  K+G  + V++ GC A ++G+E+L +  +           +N  +G +
Sbjct: 59  YV-------NTMQKKG--IKVILTGCGAVSKGKELLDKKQVFGVLGASNKDKINEFLGAK 109

Query: 132 T-YYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190
           T +Y L  L          +D D   E               +    AF+ IQEGCD  C
Sbjct: 110 TSFYELGNL--------NFIDKDIVCE--------------YENHTKAFVKIQEGCDFAC 147

Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDL 250
           ++C++P  RG   S     ++ +   L  NG  EI L G N+ ++   GL     T   L
Sbjct: 148 SYCIIPSVRGKSRSVDEKALLKQVEILGANGYSEIVLTGTNIGSY---GLKN-GTTLGKL 203

Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
           L  + +I G+ R+R  +  P  + +  ++   D   L  +LH+ +Q  S+++L+ M RR 
Sbjct: 204 LQKMGQISGIKRIRLGSLEPAQIDESFLEIL-DETWLERHLHIALQHTSEKMLRIMRRRS 262

Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370
                 ++ + I S     A+ +DFIV  PGE+++ ++  +    +       +F +SPR
Sbjct: 263 HTDNDLKLFNTIAS--KGYALGTDFIVAHPGESEEMWQEALRNFKEFPLTHIHAFIFSPR 320

Query: 371 LGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQI-IEVLIE 419
             T  + M + ++  +  ERL  L+  + +    F      Q+ +EVL+E
Sbjct: 321 NNTHSATMKDVINGTLAKERLNTLKSIVEKNNYEFRKK--NQVPLEVLVE 368


>gi|294678658|ref|YP_003579273.1| MiaB family RNA modification enzyme [Rhodobacter capsulatus SB
           1003]
 gi|294477478|gb|ADE86866.1| RNA modification enzyme, MiaB family [Rhodobacter capsulatus SB
           1003]
          Length = 464

 Score =  136 bits (342), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 119/452 (26%), Positives = 198/452 (43%), Gaps = 40/452 (8%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC   + DS R+     ++GY    S   AD +++NTC   + A  +    +G     
Sbjct: 33  SLGCPKALVDSERILTRLRAEGYAISPSYQGADAVIVNTCGFLDSAKAESLEAIGEA--- 89

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               + E G   V+V GC+  AE E I    P V  V GP+ Y ++ + +  A   K   
Sbjct: 90  ----LSENGK--VIVTGCLG-AEPEFITGVHPKVLAVTGPEQYEQVLDAVHGAVPPK--- 139

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
                  D F  L    G     R  + +L I EGC+  C FC++P  RG  +SR    V
Sbjct: 140 ------PDPFVDLLPATGIKLTPRHFS-YLKISEGCNHACKFCIIPDMRGKLVSRPAHAV 192

Query: 211 VDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYSLSEIKG 259
           + EA KL++ GV E+ ++ Q+ +A           W+G  +       +  L  L++  G
Sbjct: 193 LREAEKLLEAGVRELLVISQDTSAYGLDRRHEATAWKGAEVRAHITDLTRELGKLAQPSG 252

Query: 260 -LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
             VRL Y   +P       + A G   +++PYL +P Q      LK M R   + +    
Sbjct: 253 AWVRLHYVYPYPHVRELIPLMADG---LVLPYLDIPFQHAHPETLKRMARPAASAKTLDE 309

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           I   R+  P+I + S FIVG+PGET+ +F+  +D + +    +   F+Y    G   +++
Sbjct: 310 IAAWRADCPEIVLRSTFIVGYPGETEAEFQYLLDWMAEAQLDRVGCFQYENVKGARSNDL 369

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR--SPWLQ 436
            + V   VK ER     +  +    +   A VG + +VL++    E      R  +P + 
Sbjct: 370 PDHVPAEVKQERWERFMEAAQAISEAKLAAKVGTVQQVLVDAVDDEGATCRTRADAPEID 429

Query: 437 SVVL---NSKNHNIGDIIKVRITDVKISTLYG 465
             +      ++ + GD++ V + +     L+G
Sbjct: 430 GNLFIDEGFEDLSPGDMVTVEVEEASDYDLWG 461


>gi|283956404|ref|ZP_06373884.1| MiaB-like tRNA modifying enzyme [Campylobacter jejuni subsp. jejuni
           1336]
 gi|283792124|gb|EFC30913.1| MiaB-like tRNA modifying enzyme [Campylobacter jejuni subsp. jejuni
           1336]
          Length = 416

 Score =  136 bits (342), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 104/410 (25%), Positives = 194/410 (47%), Gaps = 55/410 (13%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + ++ F K++GC+ N+YD+  ++   + + YE +N  + A +IV+N+C +   A   + S
Sbjct: 1   MKEKVFFKTFGCRTNIYDTELLKS--YVKDYEIINDENKAQIIVVNSCTVTNGADSGIKS 58

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPI-----------VNVVVGPQ 131
           ++       N+  K+G  + V++ GC A ++G+E+L +  +           +N  +G +
Sbjct: 59  YV-------NTMQKKG--IKVILTGCGAVSKGKELLDKKQVFGVLGASNKDKINEFLGAK 109

Query: 132 T-YYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190
           T +Y L  L          +D D   E               +    AF+ IQEGCD  C
Sbjct: 110 TSFYELGNL--------NFIDKDIVCE--------------YENHTKAFVKIQEGCDFAC 147

Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDL 250
           ++C++P  RG   S     ++ +   L  NG  EI L G N+ ++   GL     +   L
Sbjct: 148 SYCIIPSVRGKSRSVDEKALLKQVEILGANGYSEIVLTGTNIGSY---GLKN-GTSLGKL 203

Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
           L  + +I G+ R+R  +  P  + +  ++   D   L  +LH+ +Q  S+++L+ M RR 
Sbjct: 204 LRKMGQISGIKRIRLGSLEPAQIDESFLEIL-DETWLERHLHIALQHTSEKMLRIMRRRS 262

Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370
                 ++ + I S     A+ +DFIV  PGE+++ ++  +    +       +F +SPR
Sbjct: 263 HTDNDLKLFNTIAS--KGYALGTDFIVAHPGESEELWQEALKKFKEFPLTHIHAFIFSPR 320

Query: 371 LGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQI-IEVLIE 419
             T  + M + ++  +  ERL  L+  + +    F      Q+ +EVLIE
Sbjct: 321 NNTHSATMKDVINGTLAKERLNTLKSIVEKNNYEFRKK--NQVSLEVLIE 368


>gi|91788563|ref|YP_549515.1| ribosomal protein S12 methylthiotransferase [Polaromonas sp. JS666]
 gi|123355625|sp|Q12A25|RIMO_POLSJ RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|91697788|gb|ABE44617.1| SSU ribosomal protein S12P methylthiotransferase [Polaromonas sp.
           JS666]
          Length = 469

 Score =  136 bits (342), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 127/473 (26%), Positives = 204/473 (43%), Gaps = 64/473 (13%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
            P+  FV S GC   + DS  +     ++GY+   + + ADL+++NTC   + A ++   
Sbjct: 16  APRVGFV-SLGCPKALTDSELILTQLSAEGYQTSKTFEGADLVIVNTCGFIDDAVKESLD 74

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGE---EILRR-SPIVNVVVGPQTYYRLPE 138
            +G     +N R        V+V GC+    GE    ++R+  P V  V GP        
Sbjct: 75  TIGEALA-ENGR--------VIVTGCLGAKGGEGAGNLVRQMHPSVLAVTGPHAT----- 120

Query: 139 LLERARFGKRVVDTDY----SVEDKFERL---SIVDGGYNRKRGVTAFLTIQEGCDKFCT 191
                   + V+D  +       D F  L   +    G        A+L I EGC+  CT
Sbjct: 121 --------QEVMDAVHLNLPKPHDPFVDLVPNAFGIAGIKLTPKHYAYLKISEGCNHRCT 172

Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGL 240
           FC++P  RG  +SR +  V++EAR L + GV E+ ++ Q+ +A           W GK +
Sbjct: 173 FCIIPSMRGDLVSRPIGDVLNEARALFEGGVKELLVISQDTSAYGVDVKYRTGFWDGKPV 232

Query: 241 DGEKCTFSDLLYSLSEIKG-LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
                     L  ++E  G  VRL Y   +P       + A G    ++PYL +P+Q   
Sbjct: 233 KTRMLELVQALGDIAEPYGAWVRLHYVYPYPSVDEVLPLMATGK---VLPYLDVPLQHSH 289

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
             +LK M R  +  +  + I R R + P+I I S FI GFPGET+ +F   ++ + +   
Sbjct: 290 PDVLKRMKRPASGEKNLERIARWREICPEIVIRSTFIAGFPGETEAEFAHLLEFMREARI 349

Query: 360 AQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419
            +A  F YS   G   +++   +   V+ ER         E         VG  ++VL++
Sbjct: 350 DRAGCFAYSAVEGATANDIPGMLPLEVREERRARFMAVAEEVSSLKLQQRVGATMQVLVD 409

Query: 420 KH---GKEKGKLVGRS----PWLQSVV------LNSKNHNIGDIIKVRITDVK 459
                G++ G   GRS    P +  VV        SK   +G+  + RI   +
Sbjct: 410 SAPALGRKGG--TGRSYADAPEIDGVVKLLPPEKISKTLKVGEFTRARIVGTQ 460


>gi|307110241|gb|EFN58477.1| hypothetical protein CHLNCDRAFT_19538 [Chlorella variabilis]
          Length = 499

 Score =  136 bits (342), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 110/369 (29%), Positives = 177/369 (47%), Gaps = 36/369 (9%)

Query: 22  IVP--QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDA--DLIVLNTCHIREKAA 77
           +VP  QR +VK++GC  N  DS  M       G++ V+  D A  DL +LNTC ++  + 
Sbjct: 62  VVPGTQRIWVKTFGCSHNSSDSEYMMGQLQEYGFKLVDEADSAAADLWLLNTCTVKSPSQ 121

Query: 78  EKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVN--VVVGPQTYYR 135
             + + L R R L  +         ++VAGCV Q +     RR+  +    ++G     R
Sbjct: 122 SAMDTLLRRGRRLGKA---------LLVAGCVPQGD-----RRTAELRGLSLLGVTQIDR 167

Query: 136 LPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
           + E +E    G  V       +    RL +     NR       L +  GC   CT+C  
Sbjct: 168 VVEAVEETLKGHTV---QLLAKKALPRLDLPKVRRNRH---IEILPLSTGCLGACTYCKT 221

Query: 196 PYTRGIEISRSLSQVVDEARKLI-DNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL 254
            + RG   S   +++V  A     D  V EI L  ++  A+ G+ +     +   LL  L
Sbjct: 222 KHARGQLGSYDPAELVRRAAAAAADPQVREIWLSSEDTGAY-GRDIG---TSLPALLREL 277

Query: 255 SEI---KGLVRLRYTTSHPRDMSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRR 309
            E+    G   LR   ++P  + + L +    L  D +  YLH+PVQSGSD +L +M R 
Sbjct: 278 VEVLPPDGRCMLRVGMTNPPFILEHLAEVGAILRDDRVFSYLHVPVQSGSDAVLTAMRRE 337

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369
           ++A ++R++ D + +  P + +++D I GFPGET++D  AT+ L+DK  +      ++ P
Sbjct: 338 YSAAQFRRVCDTLLAAVPGLELATDIICGFPGETEEDHGATLALLDKYRFPHCHISQFYP 397

Query: 370 RLGTPGSNM 378
           R GTP + M
Sbjct: 398 RPGTPAARM 406


>gi|221638765|ref|YP_002525027.1| ribosomal protein S12 methylthiotransferase [Rhodobacter
           sphaeroides KD131]
 gi|221159546|gb|ACM00526.1| MiaB-like tRNA modifying enzyme YliG [Rhodobacter sphaeroides
           KD131]
          Length = 455

 Score =  136 bits (342), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 123/451 (27%), Positives = 197/451 (43%), Gaps = 44/451 (9%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC   + DS R+     ++GY        AD +++NTC   + A  +    +G     
Sbjct: 36  SLGCPKALVDSERILTRLRAEGYAISPDYAGADAVIVNTCGFLDSAKAESLEAIGEA--- 92

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               ++E G   V+V GC+  AE + I    P V  V GP  Y             ++V+
Sbjct: 93  ----LRENGR--VIVTGCLG-AEPDYITGAHPKVLAVTGPHQY-------------EQVL 132

Query: 151 DTDY----SVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           D  +       D F  L    G     R  + +L I EGC+  C FC++P  RG   SR 
Sbjct: 133 DAVHGAVPPAPDPFVDLLPATGVRLTPRHFS-YLKISEGCNHTCRFCIIPDMRGRLASRP 191

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNA----WRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
              V+ EA KL++ GV E+ ++ Q+ +A    W+G     EK     L   L  +   VR
Sbjct: 192 ERAVLREAEKLVEAGVRELLVISQDTSAYGTDWKGP----EKFPILPLARELGRLGAWVR 247

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           L Y   +P       + A G   +++PYL +P Q     +LK M R   A      I   
Sbjct: 248 LHYVYPYPHVRELIPLMAEG---LVLPYLDIPFQHAHPEVLKRMARPAAAARTLDEIAAW 304

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R   P+IA+ S FIVG+PGET+ +F+  +D +D+    +   F+Y    G   + + + V
Sbjct: 305 RRDCPEIALRSTFIVGYPGETEAEFQTLLDWLDEAQLDRVGCFQYENVAGARSNALPDHV 364

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG--KLVGRSPWLQSVVL 440
              VK ER     +K +    +   A VG+ +EV++++  ++    +    +P +   + 
Sbjct: 365 APEVKQERWDRFMEKAQAISEAKLAAKVGRRMEVIVDEVDEDGATCRTKADAPEIDGNLF 424

Query: 441 ---NSKNHNIGDIIKVRITDVKISTLYGELV 468
                K    GDI+ V + +     L+G  V
Sbjct: 425 IDEGFKGLAPGDILTVEVEEAGEYDLWGRPV 455


>gi|326443822|ref|ZP_08218556.1| hypothetical protein SclaA2_22283 [Streptomyces clavuligerus ATCC
           27064]
          Length = 472

 Score =  136 bits (342), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 122/426 (28%), Positives = 186/426 (43%), Gaps = 57/426 (13%)

Query: 50  SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCV 109
           + G++ V    DAD+ V+NTC   E A +     L    +LK+     G    VV  GC+
Sbjct: 3   ADGWQLVEDAADADVAVVNTCGFVEAAKKDSVDALLEANDLKD----HGRTQAVVAVGCM 58

Query: 110 AQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGG 169
           A+  G+E+    P  + V+G   Y  + + L+    G   +   ++  D+ + L +    
Sbjct: 59  AERYGKELAEALPEADGVLGFDDYADISDRLQTILSGG--IHASHTPRDRRKLLPLSPAE 116

Query: 170 YNRKRGVT--------------------------------------AFLTIQEGCDKFCT 191
                GV                                       A + +  GCD+ C+
Sbjct: 117 RQSATGVALPGHGDAAPAPIVDLPEGVAPESGPRAPLRRRLGSSPVASVKLASGCDRRCS 176

Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLL 251
           FC +P  RG  ISR  S V+ E R L + GV E+ L+ +N N   GK L G+      LL
Sbjct: 177 FCAIPSFRGSFISRRPSDVLGETRWLAEQGVKEVMLVSEN-NTSYGKDL-GDIRLLETLL 234

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
             L+ + G+ R+R +   P +M   LI        + PY  L  Q  +  +L+SM R   
Sbjct: 235 PELAAVDGIERVRVSYLQPAEMRPGLIDVLTSTPKIAPYFDLSFQHSAPDVLRSMRRFGD 294

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA-----TMDLVDKIGYAQAFSFK 366
              + ++++ IRS  P   + S+FIVGFPGE++ DF       T   +D IG      F 
Sbjct: 295 TERFLELLETIRSKAPQAGVRSNFIVGFPGESEADFAELERFLTHARLDAIGV-----FG 349

Query: 367 YSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG 426
           YS   GT  +    ++DE+V AERL  L +   E      +  VG+ +EVL+E    E G
Sbjct: 350 YSDEDGTEAAGYGNKLDEDVVAERLAHLSRLAEELTAQRAEERVGETLEVLVESVDAEDG 409

Query: 427 KLVGRS 432
             VGR+
Sbjct: 410 A-VGRA 414


>gi|40794666|gb|AAR90873.1| putative 2-methylthioadenine synthetase [Brachyspira pilosicoli]
          Length = 359

 Score =  136 bits (342), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 102/315 (32%), Positives = 153/315 (48%), Gaps = 28/315 (8%)

Query: 171 NRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQ 230
           N     +A++ I +GC   C+FC +P  RG   SR +  +V EAR+   NG  EI L+  
Sbjct: 54  NTSTNYSAYIRISDGCHANCSFCAIPSIRGKHRSRKIEDIVKEAREYAKNGAKEINLIAH 113

Query: 231 NVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMP 289
               +   G D  +K    DLL  LS I G+  +R    +P  ++  +I A    + ++P
Sbjct: 114 ETTYY---GYDIYKKLALPDLLKELSVIDGIEWIRVLYQNPVVLNKSIIDAMFKTEKVVP 170

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYE-YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFR 348
           Y  +P+Q     ILK MNR +  Y  Y+ +I+ IRS   +  I +  IVGFPGET + F+
Sbjct: 171 YFDIPLQHIDKDILKDMNRGNRGYSFYKDMINYIRSYDENAVIRTSLIVGFPGETVESFK 230

Query: 349 ATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLR------EQQ 402
             +  V K+   +   F YS    T    +L    +  K ++L+   K +R      E++
Sbjct: 231 KLVSFVKKMKLDRVGVFTYSEEENTDA--LLINKKKISKNKKLMLRDKLMRIALEVSEER 288

Query: 403 VSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV----------LNSKNHNIGDIIK 452
           +S     +G+ I+VLIEK  KE+ K +GRS +    V           N  N NIGDI+K
Sbjct: 289 LS---RFIGKSIDVLIEK--KEEDKFIGRSKYDAPEVDGFVEVYFDKKNVDNINIGDIVK 343

Query: 453 VRITDVKISTLYGEL 467
           V+I       L G L
Sbjct: 344 VKIVHNTEYDLVGNL 358


>gi|330466391|ref|YP_004404134.1| MiaB-like tRNA modifying protein ylig [Verrucosispora maris
           AB-18-032]
 gi|328809362|gb|AEB43534.1| miab-like tRNA modifying enzyme ylig [Verrucosispora maris
           AB-18-032]
          Length = 492

 Score =  136 bits (342), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 125/486 (25%), Positives = 207/486 (42%), Gaps = 70/486 (14%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +R  + + GC  N  DS  +     + G++     + AD++V+NTC   EKA +     L
Sbjct: 10  RRVALLTLGCARNEVDSEELAARLHADGWQVTTDGEGADVVVVNTCGFVEKAKQDSIQTL 69

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG----PQTYYRLPELL 140
               +             VV AGC+A+  G E+    P    V+     PQ   RL  ++
Sbjct: 70  LAAADTGAK---------VVAAGCMAERYGRELADSLPEAQAVLSFDDYPQIAARLDAVV 120

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVD----------GGYNR------------------ 172
           E   F      T ++  D+ E L +             G+ R                  
Sbjct: 121 EGREF------TAHTPRDRRELLPLTPVARRDSAVSLPGHGRGADVDEHTPAHLRPVLRR 174

Query: 173 --KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQ 230
               G  A L +  GCD+ C FC +P  RG  +SR+  +++ EA  L  +GV E+ L+ +
Sbjct: 175 RLDSGPVASLKLASGCDRRCAFCAIPAFRGAFVSRTPDELLAEAEWLAKSGVRELVLVSE 234

Query: 231 NVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY 290
           N  ++ GK L G+      LL  L+ I G+VR+R +   P +    LI+A      + PY
Sbjct: 235 NSTSY-GKDL-GDPRALEKLLPQLAAIDGIVRVRASYLQPAETRPGLIEAIATTPGVAPY 292

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA- 349
             L  Q  S+ +L+ M R  +   + +++   R + P     S+FIVGFPGET  D    
Sbjct: 293 FDLSFQHSSEPVLRRMRRFGSTDRFLELLASARELDPQAGARSNFIVGFPGETRADVDEL 352

Query: 350 ----TMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV---KAERLLCLQKKLREQQ 402
               T   +D IG      F YS   GT  + +  +V       + ++L  L  +L  Q+
Sbjct: 353 VRFLTEARLDAIGM-----FDYSDEDGTEAAGLPGKVSAATIKRRYDKLSALADELCSQR 407

Query: 403 VSFNDACVGQIIEVLIEKHGKE--KGKLVGRSPWLQ-SVVLNSKNHNIGDIIKVRITDVK 459
                  +G  +EVL++    +  +G+   ++P +  S  L + +    D+  +R  D+ 
Sbjct: 408 AEDR---LGTTVEVLVDSIEGDVVEGRAAHQAPEVDGSTTLVAPDDGGVDLAALRPGDLV 464

Query: 460 ISTLYG 465
            +T+ G
Sbjct: 465 RATVTG 470


>gi|261839141|gb|ACX98906.1| hypothetical protein HPKB_0296 [Helicobacter pylori 52]
          Length = 418

 Score =  135 bits (341), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 109/393 (27%), Positives = 187/393 (47%), Gaps = 41/393 (10%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF--FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           ++ + K++GC+ N++D+  M +    FS   E      +AD+I++N+C +   A   V S
Sbjct: 2   KKVYFKTFGCRTNLFDTQVMGENLKDFSATLEE----QEADIIIINSCTVTNGADSAVRS 57

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-E 141
           +  ++  L            V+  GC  + +G+E+  +   +  V G     ++  LL E
Sbjct: 58  YAKKMARLNKE---------VLFTGCGVKTQGKELFEKG-FLKGVFGHDNKEKINVLLQE 107

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           + RF       D ++E+K    ++V     + R   AF+ IQEGCD  C +C++P  RG 
Sbjct: 108 KKRFF-----IDDNLENKHLDTTMVSEFVGKTR---AFIKIQEGCDFDCNYCIIPSVRGR 159

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-RGKGLDGEKCTFSDLLYSLSEIKGL 260
             S    +++++   L   GV E+ L G NV ++ + KG        + L+  LS+I GL
Sbjct: 160 ARSFEERKILEQVGLLCSKGVQEVVLTGTNVGSYGKDKG-----SNIARLIKKLSQIAGL 214

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R  +  P  + +       + D L  +LH+ +Q   D +L+ MNRR+ A   R++++
Sbjct: 215 KRIRIGSLEPNQI-NDEFLELLEEDFLEKHLHIALQHSHDFMLERMNRRNRAKSDRELLE 273

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
            I S   + AI +DFIVG PGE+   F      ++ +       F YS R  TP S M +
Sbjct: 274 VIAS--KNFAIGTDFIVGHPGESGSVFEEAFKNLESLPLTHIHPFIYSKRKDTPSSLMTD 331

Query: 381 QVDENVKAERLLCLQ-------KKLREQQVSFN 406
            V      +RL  ++       K  R+ Q+  N
Sbjct: 332 SVSLEDSKKRLNAIKDLIFHKNKAFRQLQLKLN 364


>gi|254441053|ref|ZP_05054546.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Octadecabacter
           antarcticus 307]
 gi|198251131|gb|EDY75446.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Octadecabacter
           antarcticus 307]
          Length = 459

 Score =  135 bits (341), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 124/456 (27%), Positives = 203/456 (44%), Gaps = 43/456 (9%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC   + DS R+     ++GY        AD +V+NTC   + A  +    +G     
Sbjct: 30  SLGCPKALVDSERILTRLRAEGYAISPDYAGADAVVVNTCGFLDSAKAESLDAIGEA--- 86

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               + E G   V+V GC+  AE + I    P +  V GP  Y ++ + +  A       
Sbjct: 87  ----LTENGK--VIVTGCLG-AEPDYIREHHPRILAVTGPHQYEQVLDAVHAA------- 132

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
               S +   + L         +    ++L I EGC+  C FC++P  RG   SR    V
Sbjct: 133 -VPPSPDPFIDLLPATQVSLTPRH--YSYLKISEGCNHKCKFCIIPDMRGRLQSRPAHAV 189

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLD-------GEKCTFSDLLYSLSEIKG---- 259
           + EA KLIDNGV E+ ++ Q+ +A+   G+D       G +   +DL   L  + G    
Sbjct: 190 MREAEKLIDNGVKELLVISQDTSAY---GVDTKHARDRGHRAHITDLARDLGSLGGENKP 246

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
            VRL Y   +P       + A G   +++PYL +P Q  S  +L+ M R   A +    I
Sbjct: 247 WVRLHYVYPYPHVRQLIPLMADG---LILPYLDIPFQHASTDVLRRMARPAAAAKTLDEI 303

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
              R + PDI + S FIVG+PGET+ +F+  +D +D+    +   FKY    G   + + 
Sbjct: 304 TAWREICPDITLRSTFIVGYPGETEAEFQVLLDWMDEAQLDRVGCFKYENVAGARSNALP 363

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQ---IIEVLIEKHGKEKGKLVGRSPWLQ 436
           + V   VK +R     +K +    +   A VGQ   +I   I+  G    +    +P + 
Sbjct: 364 DHVAAEVKQDRWDRFMEKAQAISEAKLTAKVGQVIDVIIDDIDADGVATCRTKADAPEID 423

Query: 437 SVVL---NSKNHNIGDIIKVRITDVKISTLYGELVV 469
             +     ++  ++G+I+KV + +     L+G +V 
Sbjct: 424 GNLFIDEGTEGLSVGEIVKVEVDEAGEYDLWGLIVT 459


>gi|224540006|ref|ZP_03680545.1| hypothetical protein BACCELL_04918 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224518373|gb|EEF87478.1| hypothetical protein BACCELL_04918 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 432

 Score =  135 bits (341), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 117/453 (25%), Positives = 212/453 (46%), Gaps = 45/453 (9%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEKVYSFLGRIR 88
           + GC  N+ DS  +       GY   +  +  + ++ V+NTC     A E+  + +    
Sbjct: 10  TLGCSKNLVDSEHLMRQLEEAGYHVTHDTEKPEGEIAVINTCGFIGDAKEESINMI---- 65

Query: 89  NLKNSRIKEGGDL-LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147
            L+ ++ KE GDL  + V GC+++   +E+    P V+   G   +  L + L +A    
Sbjct: 66  -LEFAQAKEEGDLEKLYVMGCLSERYLKELAIEIPQVDKFYGKFNWVELLQDLGKA---- 120

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
                 Y  E   ER       Y       A+L I EGCD+ C++C +P   G  +SR +
Sbjct: 121 ------YHEELHIERTLTTPRHY-------AYLKISEGCDRKCSYCAIPIITGKHVSRPM 167

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYT 266
            +++DE R L+  GV E  ++ Q +  +   G+D  +K    +L+  +SE+ G+  +R  
Sbjct: 168 EEILDEVRYLVSKGVKEFQVIAQELTYY---GVDLYKKQMLPELIERISEVPGVEWIRLH 224

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
            ++P      L +   +   +  Y+ + +Q  S+ +L+ M R  T  E   +I++ R   
Sbjct: 225 YAYPAHFPMDLFRVMRERPNVCRYMDIALQHISNPMLEKMRRHVTQEETYHLIEQFRKEV 284

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE-QVDEN 385
           P I + +  +VG PGET+ DF    + + K  + +  +F YS   GT  +   E ++ + 
Sbjct: 285 PGIHLRTTLMVGHPGETEADFEELKEFIRKARFDRMGAFTYSEEEGTYAAAHYEDEIPQE 344

Query: 386 VKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSV 438
           VK  R   L+ +Q+ +  +Q +   A VGQ ++V+I++   E    +GR    SP +   
Sbjct: 345 VKQARLDELMSIQQGISAEQSA---AKVGQCLKVIIDR--LEGDYYIGRTEFDSPEVDPE 399

Query: 439 VLNSKNHN---IGDIIKVRITDVKISTLYGELV 468
           VL  +      IG+  +V I +     L+G ++
Sbjct: 400 VLIEQGKQKLLIGNFYQVEIINSDDFDLFGRVI 432


>gi|308182459|ref|YP_003926586.1| hypothetical protein HPPC_01445 [Helicobacter pylori PeCan4]
 gi|308064644|gb|ADO06536.1| hypothetical protein HPPC_01445 [Helicobacter pylori PeCan4]
          Length = 418

 Score =  135 bits (341), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 111/395 (28%), Positives = 188/395 (47%), Gaps = 45/395 (11%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF--FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           ++ + K++GC+ N++D+  M +    FS   E      +AD+IV+N+C +   A   V S
Sbjct: 2   KKVYFKTFGCRTNLFDTQVMGENLKDFSATLEE----QEADIIVINSCTVTNGADSAVRS 57

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-E 141
           +  ++  L            V+  GC  + +G+E+  +   +  V G     ++  LL E
Sbjct: 58  YAKKMARLNKE---------VLFTGCGVKTQGKELFEKG-FLKGVFGHDNKEKINALLQE 107

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           + RF       D ++E+K    ++V     + R   AF+ IQEGCD  C +C++P  RG 
Sbjct: 108 KKRFF-----IDDNLENKHLDTTMVSEFVGKTR---AFIKIQEGCDFDCNYCIIPSVRGR 159

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW---RGKGLDGEKCTFSDLLYSLSEIK 258
             S    +++++   L   GV E+ L G NV ++   RG  +       + L+  LS+I 
Sbjct: 160 ARSFEERKILEQVGLLCSKGVQEVVLTGTNVGSYGKDRGSNI-------AQLIKKLSQIT 212

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           GL R+R  +  P  + +       + D L  +LH+ +Q   D +L+ MNRR+     R++
Sbjct: 213 GLKRIRIGSLEPNQI-NDEFLELLEEDFLEKHLHIALQHSHDFMLERMNRRNRTKSDREL 271

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           ++ I S   + AI +DFIVG PGE++  F      ++ +       F YS R  TP S M
Sbjct: 272 LEVIAS--KNFAIGTDFIVGHPGESESVFEKAFKNLESLPLTHIHPFIYSKRKDTPSSLM 329

Query: 379 -----LEQVDENVKAERLLCLQKK--LREQQVSFN 406
                LE   + + A + L L K    R+ Q+  N
Sbjct: 330 TDSVILEDSKKRLNAIKDLILHKNRAFRQLQLKLN 364


>gi|298704898|emb|CBJ34118.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 193

 Score =  135 bits (341), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 79/199 (39%), Positives = 118/199 (59%), Gaps = 14/199 (7%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           +++ GCQMNV DS RME      G ++     +A + VLNTC IR+ A +KVYS++G   
Sbjct: 1   METMGCQMNVADSERMEGQMADLGIQKTEDKTEASVFVLNTCSIRDHAEQKVYSYVGPY- 59

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
                R ++G ++ +VVAGCVAQ EGE++LRR P +++V+GPQ   RL +LLE    G +
Sbjct: 60  ---AIRKQKGENIAIVVAGCVAQQEGEKLLRRVPEIDLVMGPQYANRLGDLLEDVMNGNQ 116

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVT--AFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           +V TD S+        I++     +RG +  A++ I  GC++ CT+CVVP  RG+E SR 
Sbjct: 117 IVATDPSL--------IMEDVSKPRRGSSTCAWVNIIYGCNEHCTYCVVPGVRGVEQSRP 168

Query: 207 LSQVVDEARKLIDNGVCEI 225
              +  E  +L   G  E+
Sbjct: 169 KESIRQEMVELAAAGYREV 187


>gi|320161025|ref|YP_004174249.1| hypothetical protein ANT_16230 [Anaerolinea thermophila UNI-1]
 gi|319994878|dbj|BAJ63649.1| hypothetical protein ANT_16230 [Anaerolinea thermophila UNI-1]
          Length = 429

 Score =  135 bits (341), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 106/395 (26%), Positives = 191/395 (48%), Gaps = 25/395 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R F+ S GC++N  +  +    F + G+  V S  +ADL+V+NTC +  +AA        
Sbjct: 2   RIFLDSVGCRLNQSEIEKFALEFRAAGHTIVASPSEADLVVVNTCAVTAEAASD-----S 56

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R +  + +R   G    + V GC A  +    +    +  V +  Q    +  +L     
Sbjct: 57  RQKIRQAARYTSGK---IAVTGCWATLDRVGAMSLPKVDRVFLNDQKDTLVSTVLG---I 110

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
              V D +    +       + G + R R   AF+ +Q+GCD  CTFCV    RG   SR
Sbjct: 111 PTEVFDIEPLAREP------LPGLHARTR---AFIKVQDGCDNHCTFCVTRLARGKGRSR 161

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLR 264
           ++++V+ + R     G  E+ L G ++ +W   G D   K    DL+  + +   + RLR
Sbjct: 162 NIAEVLSDIRIAQAGGAKEVVLTGVHLGSW---GQDFTPKMHLRDLIKVILQESDIPRLR 218

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
            ++  P ++ +       D   L  +LHLP+QSG    L+ M R+ +  ++  ++++ R 
Sbjct: 219 LSSLEPWNLDEGFFALWED-SRLCRHLHLPLQSGCATTLRRMARKTSPQQFETLVNQARR 277

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
              D+AI++D IVGFPGET+++F  ++  V+++ +A    F YS R GT  + +   V  
Sbjct: 278 WISDVAITTDIIVGFPGETEEEFEESLRFVERMRFAGGHVFTYSDRPGTAATRLPNPVPP 337

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419
            ++  R   +++ ++E   ++    +G+ + VL E
Sbjct: 338 EIRKLRNARIREVVQESAQNYLKQFLGKEVLVLWE 372


>gi|293373984|ref|ZP_06620325.1| MiaB-like protein [Bacteroides ovatus SD CMC 3f]
 gi|292631060|gb|EFF49697.1| MiaB-like protein [Bacteroides ovatus SD CMC 3f]
          Length = 436

 Score =  135 bits (341), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 117/450 (26%), Positives = 212/450 (47%), Gaps = 39/450 (8%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDD--ADLIVLNTCHIREKAAEKVYSFLGRIR 88
           + GC  N+ DS ++       GY   +  ++   ++ V+NTC     A E+  + +    
Sbjct: 10  TLGCSKNLVDSEQLMRQLEEVGYSVTHDTENPQGEIAVINTCGFIGDAKEESINMI---- 65

Query: 89  NLKNSRIKEGGDLL-VVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147
            L+ +  KE GDL  + V GC+++   +E+    P V+   G    +   ELL+    GK
Sbjct: 66  -LEFAERKEEGDLKKLFVMGCLSERYLKELAVEIPQVDKFYGK---FNWKELLQD--LGK 119

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
              D  Y      ER       Y       A+L I EGCD+ C++C +P   G  IS+ +
Sbjct: 120 VYHDELY-----IERTLTTPQHY-------AYLKISEGCDRKCSYCAIPIITGHHISKPM 167

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG-EKCTFSDLLYSLSEIKGLVRLRYT 266
            +++DE R L+  GV E  ++ Q +  +   G+D  +K    +L+  +S+I G+  +R  
Sbjct: 168 EEILDEVRYLVSQGVKEFQVIAQELTYY---GIDRYKKQMLPELIERISDIPGVEWIRLH 224

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
            ++P      L +   + D +  Y+ + +Q  SD +LK M R+ +  +  Q+I++ R   
Sbjct: 225 YAYPAHFPTDLFRVMRERDNVCKYMDIALQHISDNMLKLMRRQVSKEDTYQLIEQFRREV 284

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE-QVDEN 385
           P I + +  +VG PGET++DF    + V K+ + +  +F YS   GT  +   E  + + 
Sbjct: 285 PGIHLRTTLMVGHPGETEEDFEDLKEFVRKVRFDRMGAFAYSEEEGTYAAETYEDSIPQE 344

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVVL- 440
           VK  RL  L    +      +   +G+ ++V+I++   E    +GR    SP +   VL 
Sbjct: 345 VKQARLDELMDIQQGISAELSAEKIGKQMKVIIDR--LEGDYYIGRTEFDSPEVDPEVLI 402

Query: 441 --NSKNHNIGDIIKVRITDVKISTLYGELV 468
             + +   IG + +V + +     LY +++
Sbjct: 403 DRSERELKIGQLYQVEVVNADDFDLYAKII 432


>gi|71029160|ref|XP_764223.1| hypothetical protein [Theileria parva strain Muguga]
 gi|68351177|gb|EAN31940.1| hypothetical protein, conserved [Theileria parva]
          Length = 750

 Score =  135 bits (341), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 102/372 (27%), Positives = 180/372 (48%), Gaps = 36/372 (9%)

Query: 28  FVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRI 87
           ++K++GC  N+ DS  M  +    GY   ++MD  DL+++N+C ++  +   + +++   
Sbjct: 329 YLKNFGCSHNISDSEYMLGIISESGYAITDTMDSCDLVIINSCTVKNPSEHGMINYI--- 385

Query: 88  RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVN----VVVGPQTYYRLPELLERA 143
               N  +K G    ++V GC+ Q++     +  PI N     ++G     ++  ++E  
Sbjct: 386 ----NQGLKLGKK--IIVTGCIPQSD-----KLHPIFNNNNISLLGIMQIEKIVYVIENM 434

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             G RVV     +E K  +L  +D    RK  +   + I  GC   CTFC   ++RG+  
Sbjct: 435 LNGNRVV----MLEKK--KLPSLDLPKIRKNKLIEIIPISTGCLGSCTFCKTKHSRGVLN 488

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           S  +  ++D     I  GV EI L  +++ A+   G+D      + L   ++ +   + L
Sbjct: 489 SYEIESILDRVESCISEGVKEIWLTSEDLGAY---GIDLGTNIITLLHSIIAVLPKDIML 545

Query: 264 RYTTSHPRDMSD-----CLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           R    +P  +       C I  H ++     ++H+PVQS SD +L+ MNR +   ++  I
Sbjct: 546 RLGMCNPPYIKKYISEVCEILRHENV---FEFIHIPVQSCSDSVLEKMNREYKLEDFLHI 602

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           +  I+   P+  I++D I GFP ET +D +AT+D +  +  +     +Y  R GT  S M
Sbjct: 603 VSVIKEKVPNCTIATDIICGFPTETHEDHQATVDTLRDLKLSVINISQYYSRKGTVSSGM 662

Query: 379 LEQVDENVKAER 390
            E +D NVK  R
Sbjct: 663 KE-LDNNVKKNR 673


>gi|111225093|ref|YP_715887.1| hypothetical protein FRAAL5734 [Frankia alni ACN14a]
 gi|122953811|sp|Q0RDV0|RIMO_FRAAA RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|111152625|emb|CAJ64366.1| Conserved hypothetical protein [Frankia alni ACN14a]
          Length = 545

 Score =  135 bits (341), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 114/429 (26%), Positives = 184/429 (42%), Gaps = 35/429 (8%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           VP+R  + + GC  N  DS  +     +QG+E V    DAD +++NTC   + A +    
Sbjct: 5   VPRRVALVTLGCSRNEVDSEELAGRLAAQGWELVADAADADAVLVNTCGFVDAAKKDSID 64

Query: 83  FLGRIRNLK--NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140
            L    +L+  +      G   VV  GC+A+  G E+    P  + V+G   Y  + E L
Sbjct: 65  ALLAADDLRAGDGEPAGAGPRAVVAVGCLAERYGNELAASLPEADAVLGFDAYPSIGEHL 124

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVD--------------------------GGYNRKR 174
           +    G  V    ++  D+   L I                            G   R+R
Sbjct: 125 DAVLGGATV--PAHTPRDRRTLLPITPVERGASANVAVHVPGHARGVAGGSAAGSPGRRR 182

Query: 175 ---GVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQN 231
              G  A L I  GCD+ C FC +P  RG  +SR    V+ EA  L   G  E+ L+ +N
Sbjct: 183 LTAGPVAALKISSGCDRRCAFCAIPSFRGSHVSRPADDVLAEAEWLAGEGARELVLVSEN 242

Query: 232 VNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL 291
             ++ GK L G+      LL  L+ + G+VR+R     P ++   L++       L PYL
Sbjct: 243 STSY-GKDL-GDLRALEKLLPQLAAVPGIVRVRTVYLQPAELRPSLLEVLLTTPGLAPYL 300

Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351
            L  Q  S  +L+ M R   +  +  ++DR R + P +   S+ IVGFPGET+ D     
Sbjct: 301 DLSFQHASPAVLRRMRRFGGSEHFLDLLDRGRGLLPGLGARSNVIVGFPGETEADVDILA 360

Query: 352 DLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVG 411
           + ++         F YS   GT   ++  ++ E     R + +   + +   +     +G
Sbjct: 361 EFLEAAELDAVGVFGYSDEEGTEAVSLPGKIAEEEIERRRVQITDLVEQLTATRAQERIG 420

Query: 412 QIIEVLIEK 420
             ++VL+E+
Sbjct: 421 SRVQVLVEE 429


>gi|332557784|ref|ZP_08412106.1| ribosomal protein S12 methylthiotransferase [Rhodobacter
           sphaeroides WS8N]
 gi|332275496|gb|EGJ20811.1| ribosomal protein S12 methylthiotransferase [Rhodobacter
           sphaeroides WS8N]
          Length = 455

 Score =  135 bits (340), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 123/451 (27%), Positives = 196/451 (43%), Gaps = 44/451 (9%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC   + DS R+     ++GY        AD +++NTC   + A  +    +G     
Sbjct: 36  SLGCPKALVDSERILTRLRAEGYAISPDYAGADAVIVNTCGFLDSAKAESLEAIGEA--- 92

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               ++E G   V+V GC+  AE + I    P V  V GP  Y             ++V+
Sbjct: 93  ----LRENGR--VIVTGCLG-AEPDYITGAHPKVLAVTGPHQY-------------EQVL 132

Query: 151 DTDY----SVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           D  +       D F  L    G     R  + +L I EGC+  C FC++P  RG   SR 
Sbjct: 133 DAVHGAVPPAPDPFVDLLPATGVRLTPRHFS-YLKISEGCNHTCRFCIIPDMRGRLTSRP 191

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNA----WRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
              V+ EA KL++ GV E+ ++ Q+ +A    W+G     EK     L   L  +   VR
Sbjct: 192 ERAVLREAEKLVEAGVRELLVISQDTSAYGTDWKGP----EKFPILPLARELGRLGAWVR 247

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           L Y   +P       + A G   +++PYL +P Q     +LK M R   A      I   
Sbjct: 248 LHYVYPYPHVRELIPLMAEG---LVLPYLDIPFQHAHPEVLKRMARPAAAARTLDEIAAW 304

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R   P+I + S FIVG+PGET+ +F+  +D +D+    +   F+Y    G   + + + V
Sbjct: 305 RRDCPEITLRSTFIVGYPGETEAEFQTLLDWLDEAQLDRVGCFQYENVAGARSNALPDHV 364

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG--KLVGRSPWLQSVVL 440
              VK ER     +K +    +   A VG+ IEV++++  ++    +    +P +   + 
Sbjct: 365 APEVKQERWDRFMEKAQAISEAKLAAKVGRRIEVIVDEVDEDGATCRTKADAPEIDGNLF 424

Query: 441 ---NSKNHNIGDIIKVRITDVKISTLYGELV 468
                K    GDI+ V + +     L+G  V
Sbjct: 425 IDEGFKGLAPGDILAVEVEEAGEYDLWGRPV 455


>gi|157415263|ref|YP_001482519.1| MiaB-like tRNA modifying protein [Campylobacter jejuni subsp.
           jejuni 81116]
 gi|157386227|gb|ABV52542.1| hypothetical protein C8J_0943 [Campylobacter jejuni subsp. jejuni
           81116]
 gi|307747905|gb|ADN91175.1| MiaB-like tRNA modifying enzyme [Campylobacter jejuni subsp. jejuni
           M1]
 gi|315932134|gb|EFV11077.1| RNA modification enzyme, MiaB family protein [Campylobacter jejuni
           subsp. jejuni 327]
          Length = 416

 Score =  135 bits (340), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 103/410 (25%), Positives = 194/410 (47%), Gaps = 55/410 (13%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + ++ F K++GC+ N+YD+  ++   + + YE +N  + A +IV+N+C +   A   + S
Sbjct: 1   MKEKVFFKTFGCRTNIYDTELLKS--YVKDYEIINDENKAQIIVVNSCTVTNGADSGIKS 58

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPI-----------VNVVVGPQ 131
           ++       N+  K+G  + V++ GC A ++G+E+L +  +           +N  +G +
Sbjct: 59  YV-------NTMQKKG--IKVILTGCGAVSKGKELLDKKQVFGVLGASNKDKINEFLGAK 109

Query: 132 T-YYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190
           T +Y L  L          +D D   E               +    AF+ IQEGCD  C
Sbjct: 110 TSFYELGNL--------NFIDKDIVCE--------------YENHTKAFVKIQEGCDFAC 147

Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDL 250
           ++C++P  RG   S     ++ +   L  NG  EI L G N+ ++   GL     +   L
Sbjct: 148 SYCIIPSVRGKSRSVDEKALLKQVEILGANGYSEIVLTGTNIGSY---GLKN-GTSLGKL 203

Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
           L  + +I G+ R+R  +  P  + +  ++   D   L  +LH+ +Q  S+++L+ M RR 
Sbjct: 204 LQKMGQISGIKRIRLGSLEPAQIDESFLEIL-DETWLERHLHIALQHTSEKMLRIMRRRS 262

Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370
                 ++ + I S     A+ +DFIV  PGE+++ ++  +    +       +F +SPR
Sbjct: 263 HTDNDLKLFNTIAS--KGYALGTDFIVAHPGESEEVWQEALKKFKEFPLTHIHAFIFSPR 320

Query: 371 LGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQI-IEVLIE 419
             T  + M + ++  +  ERL  L+  + +    F      Q+ +EVL+E
Sbjct: 321 NNTHSATMKDVINGTLAKERLNILKSIVEKNNYEFRKK--NQVPLEVLVE 368


>gi|315058449|gb|ADT72778.1| MiaB family protein [Campylobacter jejuni subsp. jejuni S3]
          Length = 416

 Score =  135 bits (340), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 104/410 (25%), Positives = 194/410 (47%), Gaps = 55/410 (13%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + ++ F K++GC+ N+YD+  ++   + + YE +N  + A +IV+N+C +   A   + S
Sbjct: 1   MKEKVFFKTFGCRTNIYDTELLKS--YVKDYEIINDENKAQIIVVNSCTVTNGADSGIKS 58

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPI-----------VNVVVGPQ 131
           ++       N+  K+G  + V++ GC A ++G+E+L +  +           +N  +G +
Sbjct: 59  YV-------NTMQKKG--IKVILTGCGAVSKGKELLDKKQVFGVLGASNKDKINEFLGAK 109

Query: 132 T-YYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190
           T +Y L  L          +D D   E               +    AF+ IQEGCD  C
Sbjct: 110 TSFYELGNL--------NFIDKDIVCE--------------YENHTKAFVKIQEGCDFAC 147

Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDL 250
           ++C++P  RG   S     ++ +   L  NG  EI L G N+ ++   GL     T   L
Sbjct: 148 SYCIIPSVRGKSRSVDEKALLKQVEILGANGYSEIVLTGTNIGSY---GLKN-GTTLGKL 203

Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
           L  + +I G+ R+R  +  P  + +  ++   D   L  +LH+ +Q  S+++L+ M RR 
Sbjct: 204 LQKMGQILGIKRIRLGSLEPAQLDESFLEIL-DEAWLERHLHIALQHTSEKMLRIMRRRS 262

Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370
                 ++ + I S     A+ +DFIV  PGE+++ ++  +    +       +F +SPR
Sbjct: 263 HTDNDLKLFNTIAS--KGYALGTDFIVAHPGESEELWQEALRNFKEFPLTHIHAFIFSPR 320

Query: 371 LGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQI-IEVLIE 419
             T  + M + ++  +  ERL  L+  + +    F      Q+ +EVL+E
Sbjct: 321 NNTHSTTMKDVINGTLAKERLNTLKSIVEKNNYEFRKK--NQVSLEVLVE 368


>gi|212702220|ref|ZP_03310348.1| hypothetical protein DESPIG_00231 [Desulfovibrio piger ATCC 29098]
 gi|212674346|gb|EEB34829.1| hypothetical protein DESPIG_00231 [Desulfovibrio piger ATCC 29098]
          Length = 448

 Score =  135 bits (340), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 106/394 (26%), Positives = 182/394 (46%), Gaps = 30/394 (7%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +F+  ++GC++N Y++  + + + ++G    +    AD++ +N+C I  +          
Sbjct: 5   KFYFITFGCKVNQYETQSLREAWQARGGVECDDPAQADVVCVNSCAITARGERDA----- 59

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVV----VGPQTYYRLPELLE 141
             RN      +      +++ GC A+    E  RR    + V    + PQ   RL  LL 
Sbjct: 60  --RNAVFRLRRAAPAARLILTGCAARLF--EDFRRHGHEDCVQPDLILPQGDKRL--LLA 113

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
                  +  T  +    +   +I   G+ R R V   L +Q+GC   CT+C+VP TRG 
Sbjct: 114 GPWTEGELAPTGEAQAPSYPPFAI--SGFRRARPV---LKVQDGCQHRCTYCIVPLTRGR 168

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSL-----S 255
            +SR    V+ EAR+L+  G  EI + G N+  +     D G+   F  LL  L      
Sbjct: 169 CLSRPPEDVIAEARRLLLAGHAEIMISGINLRQYGRDNADFGD---FWSLLRRLDAALAP 225

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH-TAYE 314
           E  G  R R ++  P  + D  ++      +L P LH+ +Q  S  +L+ M R H TA  
Sbjct: 226 EFAGRGRFRISSLEPSQLDDEGVETLMACRMLCPQLHISLQHASQPVLRRMGRGHYTAAM 285

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
            ++ ++R+ +  P + + +D I GFPGE ++D    +D V +  ++ A  F YS R GT 
Sbjct: 286 LQRAVERLHAHWPVMGLGADIIAGFPGEREEDVACLLDFVRETPFSYAHVFPYSRRPGTA 345

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDA 408
                  + + VK ER   ++  + E++ +F  A
Sbjct: 346 ADRFDGHLPQQVKQERAARVRAAVEERRQAFCQA 379


>gi|13542169|ref|NP_111857.1| 2-methylthioadenine synthetase [Thermoplasma volcanium GSS1]
 gi|14325601|dbj|BAB60504.1| hypothetical protein [Thermoplasma volcanium GSS1]
          Length = 401

 Score =  135 bits (340), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 119/453 (26%), Positives = 215/453 (47%), Gaps = 64/453 (14%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + + ++YGC +N  ++    +   ++G   V++  +ADL ++ TC + +K  + +   + 
Sbjct: 2   KIYFEAYGCTLNQGETALYVNKLLNEGNTLVSNPKEADLSIIGTCAVIKKTEDHM---MA 58

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           RI+NL  SR  +     V V GC+A  +G+ ++      NV V           +E+ RF
Sbjct: 59  RIQNL--SRFGK-----VEVIGCLAPVKGKTMVED----NVSV-----------IEKDRF 96

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                    S ++  + +S V+        + + + I +GC   C FCV    RG  +SR
Sbjct: 97  --------RSFQEVIDEVSPVNA------EIVSGIPINQGCTGKCNFCVSHIARGKLVSR 142

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
              ++  + + L+  G+ EI +   +  A+ GK +         L+ +++EI    RLR 
Sbjct: 143 KPEKIAGQIKILLQRGIKEIKITSLDTAAY-GKDIG---LRLPHLIRTITEIGDDFRLRV 198

Query: 266 TTSHPR---DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
               P+   ++ D LI A+    V   +LHLPVQSG D +L+ MNR +T  ++ +I  + 
Sbjct: 199 GMMEPKNTLEIVDDLISAYRSEKVF-KFLHLPVQSGDDYVLEVMNREYTVSDFIRITGKF 257

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG------- 375
           R   PD  +S+D I+G+  E DD F  T+ L++KI        K+SPR  T         
Sbjct: 258 REAFPDSTLSTDLIIGYYAENDDSFEKTVQLIEKIRPEIINVTKFSPRELTADFEKRPKP 317

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWL 435
           +N+L++ D  +       LQ+K            +G+   VLI ++GK +  ++GR    
Sbjct: 318 TNILKEQDRMIADMHKEILQEKFSN--------LIGKTEFVLITENGKGRS-MIGRDHAY 368

Query: 436 QSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           + +V+  K     +  +V IT  + ++L G ++
Sbjct: 369 RPIVIMDKTRKF-EFHQVEITGFENTSLIGRII 400


>gi|108562712|ref|YP_627028.1| hypothetical protein HPAG1_0287 [Helicobacter pylori HPAG1]
 gi|107836485|gb|ABF84354.1| hypothetical protein HPAG1_0287 [Helicobacter pylori HPAG1]
          Length = 418

 Score =  135 bits (340), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 109/395 (27%), Positives = 187/395 (47%), Gaps = 45/395 (11%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF--FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           ++ + K++GC+ N++D+  M +    FS   E      +AD+IV+N+C +   A   V S
Sbjct: 2   KKVYFKTFGCRTNLFDTQVMGENLKDFSATLEE----QEADIIVINSCTVTNGADSAVRS 57

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-E 141
           +  ++  L            V+  GC  + +G+E+  +   +  V G     ++  LL E
Sbjct: 58  YAKKMVRLNKE---------VLFTGCGVKTQGKELFEKG-FLKGVFGHDNKEKINALLQE 107

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           + RF       D ++E+K    ++V     + R   AF+ IQEGCD  C +C++P  RG 
Sbjct: 108 KKRFF-----IDDNLENKHLDTTMVSEFVGKTR---AFIKIQEGCDFDCNYCIIPSVRGR 159

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW---RGKGLDGEKCTFSDLLYSLSEIK 258
             S    +++++   L   GV E+ L G NV ++   RG  +       + L+  LS+I 
Sbjct: 160 ARSFEERKILEQVGLLCSKGVQEVVLTGTNVGSYGKDRGSNI-------ARLIKKLSQIA 212

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           GL R+R  +  P  + +       + D L  +LH+ +Q   D +L+ MNRR+     R++
Sbjct: 213 GLKRIRIGSLEPNQI-NDEFLELLEEDFLEKHLHIALQHSHDFMLERMNRRNRTKSDREL 271

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           ++ I S   + AI +DFIVG PGE++  F      ++ +       F YS R  TP S M
Sbjct: 272 LEVIAS--KNFAIGTDFIVGHPGESESVFEKAFKNLESLPLTHIHPFIYSKRKDTPSSLM 329

Query: 379 LEQVDENVKAERLLCLQ-------KKLREQQVSFN 406
            + V      +RL  ++       K  R+ Q+  N
Sbjct: 330 TDSVSLEDSKKRLNAIKDLILHKNKAFRQLQLKLN 364


>gi|57237831|ref|YP_179079.1| MiaB-like tRNA modifying enzyme [Campylobacter jejuni RM1221]
 gi|88596372|ref|ZP_01099609.1| MiaB-like tRNA modifying enzyme [Campylobacter jejuni subsp. jejuni
           84-25]
 gi|148926084|ref|ZP_01809770.1| hypothetical protein Cj8486_1074 [Campylobacter jejuni subsp.
           jejuni CG8486]
 gi|218562622|ref|YP_002344401.1| putative MiaB-like tRNA modifying enzyme [Campylobacter jejuni
           subsp. jejuni NCTC 11168]
 gi|57166635|gb|AAW35414.1| MiaB-like tRNA modifying enzyme [Campylobacter jejuni RM1221]
 gi|88191213|gb|EAQ95185.1| MiaB-like tRNA modifying enzyme [Campylobacter jejuni subsp. jejuni
           84-25]
 gi|112360328|emb|CAL35124.1| putative MiaB-like tRNA modifying enzyme [Campylobacter jejuni
           subsp. jejuni NCTC 11168]
 gi|145845563|gb|EDK22655.1| hypothetical protein Cj8486_1074 [Campylobacter jejuni subsp.
           jejuni CG8486]
 gi|284926236|gb|ADC28588.1| MiaB-like tRNA modifying enzyme [Campylobacter jejuni subsp. jejuni
           IA3902]
 gi|315928365|gb|EFV07680.1| RNA modification enzyme, MiaB family protein [Campylobacter jejuni
           subsp. jejuni DFVF1099]
          Length = 416

 Score =  135 bits (340), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 104/410 (25%), Positives = 194/410 (47%), Gaps = 55/410 (13%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + ++ F K++GC+ N+YD+  ++   + + YE +N  + A +IV+N+C +   A   + S
Sbjct: 1   MKEKVFFKTFGCRTNIYDTELLKS--YVKDYEIINDENKAQIIVVNSCTVTNGADSGIKS 58

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPI-----------VNVVVGPQ 131
           ++       N+  K+G  + V++ GC A ++G+E+L +  +           +N  +G +
Sbjct: 59  YV-------NTMQKKG--IKVILTGCGAVSKGKELLDKKQVFGVLGASNKDKINEFLGAK 109

Query: 132 T-YYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190
           T +Y L  L          +D D   E               +    AF+ IQEGCD  C
Sbjct: 110 TSFYELGNL--------NFIDKDIVCE--------------YENHTKAFVKIQEGCDFAC 147

Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDL 250
           ++C++P  RG   S     ++ +   L  NG  EI L G N+ ++   GL     T   L
Sbjct: 148 SYCIIPSVRGKSRSVDEKALLKQVEILGANGYSEIVLTGTNIGSY---GLKN-GTTLGKL 203

Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
           L  + +I G+ R+R  +  P  + +  ++   D   L  +LH+ +Q  S+++L+ M RR 
Sbjct: 204 LQKMGQILGIKRIRLGSLEPAQLDESFLEIL-DEAWLERHLHIALQHTSEKMLRIMRRRS 262

Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370
                 ++ + I S     A+ +DFIV  PGE+++ ++  +    +       +F +SPR
Sbjct: 263 HTDNDLKLFNTIAS--KGYALGTDFIVAHPGESEELWQEALRNFKEFPLTHIHAFIFSPR 320

Query: 371 LGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQI-IEVLIE 419
             T  + M + ++  +  ERL  L+  + +    F      Q+ +EVL+E
Sbjct: 321 NNTHSATMKDVINGTLAKERLNTLKSIVEKNNYEFRKK--NQVSLEVLVE 368


>gi|319793990|ref|YP_004155630.1| miab-like tRNA modifying enzyme ylig [Variovorax paradoxus EPS]
 gi|315596453|gb|ADU37519.1| MiaB-like tRNA modifying enzyme YliG [Variovorax paradoxus EPS]
          Length = 468

 Score =  135 bits (340), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 106/382 (27%), Positives = 173/382 (45%), Gaps = 55/382 (14%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
            P+  FV S GC   + DS  +     ++GY+   + + ADL+++NTC   + A ++   
Sbjct: 15  APKVGFV-SLGCPKALTDSELILTRLSAEGYQTSKTFEGADLVIVNTCGFIDDAVKESLD 73

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEE----ILRRSPIVNVVVGPQTYYRLPE 138
            +G     +N R        V+V GC+    G++    + +  P V  V GP        
Sbjct: 74  TIGEALA-ENGR--------VIVTGCLGAKTGDQGGNLVRQMHPSVLAVTGPHAT----- 119

Query: 139 LLERARFGKRVVDTDYS----VEDKFERL---SIVDGGYNRKRGVTAFLTIQEGCDKFCT 191
                   + V+D  ++      D F  L   +    G        A+L I EGC+  CT
Sbjct: 120 --------QEVMDAVHANLPKPHDPFIDLVPNTFGIAGLKLTPRHYAYLKISEGCNHRCT 171

Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGL 240
           FC++P  RG  +SR +  V+ EA+ L + GV E+ ++ Q+ +A           W GK +
Sbjct: 172 FCIIPSMRGDLVSRPVGDVLGEAKALFEGGVKELLVISQDTSAYGVDVKYRTGFWDGKPV 231

Query: 241 DGEKCTFSDLLYSLSEIK----GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQ 296
              K    +L+ +L EI       VRL Y   +P       + A G +   +PYL +P+Q
Sbjct: 232 ---KTRMLELVRTLGEIAEPYGAWVRLHYVYPYPSVDEIIPLMASGQV---LPYLDVPLQ 285

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
                +LK M R  +  +  + + R R V P++ I S FI GFPGET+ +F   +D + +
Sbjct: 286 HSHPDVLKRMKRPASGEKNLERLARWREVCPELVIRSTFIAGFPGETEQEFGHLLDFIRE 345

Query: 357 IGYAQAFSFKYSPRLGTPGSNM 378
               +A  F YSP  G   +++
Sbjct: 346 AEIDRAGCFAYSPVEGATANDI 367


>gi|317012127|gb|ADU82735.1| hypothetical protein HPLT_01465 [Helicobacter pylori Lithuania75]
          Length = 418

 Score =  135 bits (340), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 107/387 (27%), Positives = 185/387 (47%), Gaps = 38/387 (9%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF--FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           ++ + K++GC+ N++D+  M +    FS   E      +AD+IV+N+C +   A   V S
Sbjct: 2   KKVYFKTFGCRTNLFDTQVMGENLKDFSATLEE----QEADIIVINSCTVTNGADSAVRS 57

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-E 141
           +  ++  L         D  V+  GC  + +G+E+  +   +  V G     ++  LL E
Sbjct: 58  YAKKMARL---------DKEVLFTGCGVKTQGKELFEKG-FLKGVFGHDNKEKINALLQE 107

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           + RF       D ++E+K    ++V     + R   AF+ IQEGCD  C +C++P  RG 
Sbjct: 108 KKRFF-----IDDNLENKHLDTTMVSEFVGKTR---AFIKIQEGCDFDCNYCIIPSVRGR 159

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW---RGKGLDGEKCTFSDLLYSLSEIK 258
             S    +++++   L   GV E+ L G NV ++   RG  +       + L+  LS+I 
Sbjct: 160 ARSFEERKILEQVGLLCSKGVQEVVLTGTNVGSYGKDRGSNI-------ARLIKKLSQIA 212

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           GL R+R  +  P  + +       + D L  +LH+ +Q   D +L+ MNRR+     R++
Sbjct: 213 GLKRIRIGSLEPNQI-NDEFLELLEEDFLEKHLHIALQHSHDLMLERMNRRNRTKSDREL 271

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           ++ I S   + AI +DFIVG PGE+   F      ++ +       F YS R  TP S M
Sbjct: 272 LEVIAS--KNFAIGTDFIVGHPGESGSVFEKAFKNLESLPLTHIHPFIYSKRKDTPSSLM 329

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSF 405
            + V      +RL  ++  +  +  +F
Sbjct: 330 TDSVSLEDSKKRLNAIKDLILHKNKAF 356


>gi|90083062|dbj|BAE90613.1| unnamed protein product [Macaca fascicularis]
          Length = 464

 Score =  135 bits (340), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 102/376 (27%), Positives = 180/376 (47%), Gaps = 26/376 (6%)

Query: 103 VVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFER 162
           +V+AGCV QA+  +   +      ++G Q   R+ E++E    G  V       +D   R
Sbjct: 21  IVLAGCVPQAQPRQDYLKG---LSIIGVQQIDRVVEVVEETIKGHSVRLLGQK-KDNGRR 76

Query: 163 L--SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN 220
           L  + +D    RK  +   ++I  GC   CT+C   + RG   S  + ++VD A++    
Sbjct: 77  LGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELVDRAKQSFQE 136

Query: 221 GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI--------KGLVRLRYTTSHPRD 272
           GVCEI L  ++  A+ G+ +         LL+ L E+         G+    Y   H  +
Sbjct: 137 GVCEIWLTSEDTGAY-GRDIG---TNLPTLLWKLVEVIPEGAMLRLGMTNPPYILEHLEE 192

Query: 273 MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAIS 332
           M+  L     +   +  +LH+PVQ  SD +L  M R +   ++++++D ++   P I I+
Sbjct: 193 MAKIL-----NHPRVYAFLHIPVQPASDSVLMEMKREYCVADFKRVVDFLKEKVPGITIA 247

Query: 333 SDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLL 392
           +D I GFPGETD DF+ T+ LV++  +   F  ++ PR GTP + M EQV   VK +R  
Sbjct: 248 TDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKM-EQVPAQVKKQRTK 306

Query: 393 CLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIK 452
            L +       S  +  +G+  +VL+ +   +    V  + + + V++      +G +++
Sbjct: 307 DLSRVF--HSYSPYNHKIGERQQVLVTEESFDSKFYVAHNRFYEQVLVPKNPAFMGKMVE 364

Query: 453 VRITDVKISTLYGELV 468
           V I +     + G+ V
Sbjct: 365 VDICESGKHFMKGQPV 380


>gi|257456539|ref|ZP_05621735.1| conserved hypothetical protein [Treponema vincentii ATCC 35580]
 gi|257446199|gb|EEV21246.1| conserved hypothetical protein [Treponema vincentii ATCC 35580]
          Length = 498

 Score =  135 bits (340), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 106/389 (27%), Positives = 170/389 (43%), Gaps = 50/389 (12%)

Query: 60  DDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILR 119
           +   L  +NTC +  KA +K        R L    IKE    +++V GC AQ E  EI  
Sbjct: 65  EQTALCFVNTCTVTGKAEQKA-------RRLIRLLIKEHPYAVILVTGCYAQLEAAEIEA 117

Query: 120 RSPIVNVVVGPQT--YYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDG--------- 168
             P V    G Q      +P        G    DT + +      LS + G         
Sbjct: 118 LHPHVLAFPGQQKDLLTAIPAYFAELVRGSAYFDTAFFLSALRTYLSGLTGRIPQDEPRH 177

Query: 169 ----------GYNRKRGVT-----------AFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
                     G  RK               A L IQ+GC+  C +C +   RG  +S   
Sbjct: 178 HKPVGDQSGHGIQRKPLFALSSPHFLFHSRALLKIQDGCNDACAYCRIRLARGKSVSLPA 237

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
           ++V++  R + + GV E+TL G N++ +R +  D     F+ +L  + E    +R+R ++
Sbjct: 238 AEVLERLRCIEETGVPEVTLTGVNLSQYRSEAGD-----FAGILKLILE-NSTIRVRISS 291

Query: 268 SHPRDMSDCLIK--AHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
            +P  + + L+   AH  +    P+ HL VQSGSD +LK+M+R +        +  +R V
Sbjct: 292 LYPDRIDEALVPLLAHPRI---CPHFHLSVQSGSDAVLKTMHRGYKNTTVYHAVSELRRV 348

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
           + D  I +D I GFPGET+ DF  T  +  ++ +A   +F +S R GT    M  +V E 
Sbjct: 349 KGDPFIGADIITGFPGETEADFEETYRMCRELNFAGIHAFPFSARPGTEAWKMQPKVPER 408

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQII 414
           +  +R+  L +    Q  ++     G+ +
Sbjct: 409 IAGQRVKKLNELAETQAAAYLHGWDGKFV 437


>gi|119357557|ref|YP_912201.1| MiaB-like tRNA modifying enzyme YliG [Chlorobium phaeobacteroides
           DSM 266]
 gi|238065324|sp|A1BHA0|RIMO_CHLPD RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|119354906|gb|ABL65777.1| SSU ribosomal protein S12P methylthiotransferase [Chlorobium
           phaeobacteroides DSM 266]
          Length = 432

 Score =  135 bits (340), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 104/356 (29%), Positives = 172/356 (48%), Gaps = 26/356 (7%)

Query: 28  FVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRI 87
           F+ S GC  N  DS R+     + G       D AD I++NTC   E A E+  + +   
Sbjct: 7   FLLSLGCSKNTVDSERLMAQAEASGITFTEEADLADTILINTCGFIEDAKEESIAEILAA 66

Query: 88  RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147
              K   I  G    V V GC+++    E+    P ++   G +    LP LL+      
Sbjct: 67  VEKKTQGIVSG----VYVMGCLSELYRTEMREELPEIDGFFGTR---ELPALLQ------ 113

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
             +   Y  ++ ++  S++   +       ++L I EGC++ C+FC +P  RG   S+ +
Sbjct: 114 -AIGAQYR-DELYDHRSLLTPPH------ISYLKIAEGCNRSCSFCSIPKIRGRYRSQPM 165

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK-GLVRLRYT 266
            Q++ EA  L   GV E+ L+ Q+ + + G+ L G      +LL  LS+++   +RL Y 
Sbjct: 166 EQLLREAALLQKKGVRELNLIAQDTSIY-GRDLYGTP-MLRELLVRLSDMEFRWIRLLY- 222

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
            ++P D    +I A  +   +  YL LP+Q  +DRIL+SMNR  T  E  +++D IR+  
Sbjct: 223 -AYPLDFPLEVITAMSERKNICNYLDLPLQHCNDRILRSMNRGITKTETVRLLDTIRAAN 281

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           PDI + +  +VGFPGET  +F   M  ++ + + +   F Y      P   + + V
Sbjct: 282 PDIRLRTTMLVGFPGETRAEFDELMQFIETMRFDRLGCFPYCHEEHAPSYALEDTV 337


>gi|86152771|ref|ZP_01070976.1| MiaB-like tRNA modifying enzyme [Campylobacter jejuni subsp. jejuni
           HB93-13]
 gi|121612428|ref|YP_001000685.1| MiaB-like tRNA modifying enzyme [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|167005607|ref|ZP_02271365.1| MiaB-like tRNA modifying enzyme [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|85843656|gb|EAQ60866.1| MiaB-like tRNA modifying enzyme [Campylobacter jejuni subsp. jejuni
           HB93-13]
 gi|87249241|gb|EAQ72202.1| MiaB-like tRNA modifying enzyme [Campylobacter jejuni subsp. jejuni
           81-176]
          Length = 416

 Score =  135 bits (340), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 103/410 (25%), Positives = 194/410 (47%), Gaps = 55/410 (13%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + ++ F K++GC+ N+YD+  ++   + + YE +N  + A +IV+N+C +   A   + S
Sbjct: 1   MKEKVFFKTFGCRTNIYDTELLKS--YVKDYEIINDENKAQIIVVNSCTVTNGADSGIKS 58

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPI-----------VNVVVGPQ 131
           ++       N+  K+G  + V++ GC A ++G+E+L +  +           +N  +G +
Sbjct: 59  YV-------NTMQKKG--IKVILTGCGAVSKGKELLDKKQVFGVLGASNKDKINEFLGAK 109

Query: 132 T-YYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190
           T +Y L  L          +D D   E               +    AF+ IQEGCD  C
Sbjct: 110 TSFYELGNL--------NFIDKDIVCE--------------YENHTKAFVKIQEGCDFAC 147

Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDL 250
           ++C++P  RG   S     ++ +   L  NG  EI L G N+ ++   GL     +   L
Sbjct: 148 SYCIIPSVRGKSRSVDEKALLKQVEILGANGYSEIVLTGTNIGSY---GLKN-GTSLGKL 203

Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
           L  + +I G+ R+R  +  P  + +  ++   D   L  +LH+ +Q  S+++L+ M RR 
Sbjct: 204 LQKMGQISGIKRIRLGSLEPAQLDESFLEIL-DEAWLERHLHIALQHTSEKMLRIMRRRS 262

Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370
                 ++ + I S     A+ +DFIV  PGE+++ ++  +    +       +F +SPR
Sbjct: 263 HTDNDLKLFNTIAS--KGYALGTDFIVAHPGESEELWQEALRNFKEFPLTHIHAFIFSPR 320

Query: 371 LGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQI-IEVLIE 419
             T  + M + ++  +  ERL  L+  + +    F      Q+ +EVL+E
Sbjct: 321 NNTHSATMKDVINGTLAKERLNTLKSIVEKNNYEFRKK--NQVSLEVLVE 368


>gi|299145602|ref|ZP_07038670.1| 2-methylthioadenine synthetase [Bacteroides sp. 3_1_23]
 gi|298516093|gb|EFI39974.1| 2-methylthioadenine synthetase [Bacteroides sp. 3_1_23]
          Length = 436

 Score =  135 bits (339), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 117/450 (26%), Positives = 211/450 (46%), Gaps = 39/450 (8%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDD--ADLIVLNTCHIREKAAEKVYSFLGRIR 88
           + GC  N+ DS ++       GY   +  ++   ++ V+NTC     A E+  + +    
Sbjct: 10  TLGCSKNLVDSEQLMRQLEEVGYSVTHDTENPQGEIAVINTCGFIGDAKEESINMI---- 65

Query: 89  NLKNSRIKEGGDLL-VVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147
            L+ +  KE GDL  + V GC+++   +E+    P V+   G    +   ELL+    GK
Sbjct: 66  -LEFAERKEEGDLKKLFVMGCLSERYLKELAVEIPQVDKFYGK---FNWKELLQD--LGK 119

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
              D  Y      ER       Y       A+L I EGCD+ C++C +P   G  IS+ +
Sbjct: 120 VYHDELY-----IERTLTTPQHY-------AYLKISEGCDRKCSYCAIPIITGHHISKPM 167

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG-EKCTFSDLLYSLSEIKGLVRLRYT 266
            +++DE R L+  GV E  ++ Q +  +   G+D  +K    +L+  +S+I G+  +R  
Sbjct: 168 EEILDEVRYLVSQGVKEFQVIAQELTYY---GIDRYKKQMLPELIERISDIPGVEWIRLH 224

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
            ++P      L +   + D +  Y+ + +Q  SD +LK M R+ +  +  Q+I++ R   
Sbjct: 225 YAYPAHFPTDLFRVMRERDNVCKYMDIALQHISDNMLKLMRRQVSKEDTYQLIEQFRREV 284

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE-QVDEN 385
           P I + +  +VG PGET++DF    + V K+ + +  +F YS   GT  +   E  + + 
Sbjct: 285 PGIHLRTTLMVGHPGETEEDFEDLKEFVRKVRFDRMGAFAYSEEEGTYAAETYEDSIPQE 344

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVVL- 440
           VK  RL  L    +      +   +G+ ++V+I++   E    +GR    SP +   VL 
Sbjct: 345 VKQARLDELMDIQQGISAELSAEKIGKQMKVIIDR--LEGDYYIGRTEFDSPEVDPEVLI 402

Query: 441 --NSKNHNIGDIIKVRITDVKISTLYGELV 468
             + +   IG   +V + +     LY +++
Sbjct: 403 DRSERELKIGQFYQVEVVNADDFDLYAKII 432


>gi|237752873|ref|ZP_04583353.1| 2-methylthioadenine synthetase [Helicobacter winghamensis ATCC
           BAA-430]
 gi|229375140|gb|EEO25231.1| 2-methylthioadenine synthetase [Helicobacter winghamensis ATCC
           BAA-430]
          Length = 443

 Score =  135 bits (339), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 110/467 (23%), Positives = 220/467 (47%), Gaps = 46/467 (9%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + ++F + S GC  N+ DS  M        YE    + +AD++++NTC   E A ++   
Sbjct: 1   MSKKFHLISLGCTKNLVDSEVMLGCL--SAYENTQDVSEADVVIVNTCGFIEAAKQE--- 55

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
               I+ L N+   +  + ++V +GC+++   +E+ +  P ++++ G   Y ++  ++++
Sbjct: 56  ---SIQTLLNALEAKKDEAILVASGCLSERYAKELKQEIPEIDIITGVGDYDKIDVMIQK 112

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            + G+ +  +   V    E    V  G      + A++ + EGC++ C+FC +P  +G  
Sbjct: 113 RKKGEEICQSQNGVFLANETTKRVISGSK----IHAYIKLSEGCNQKCSFCAIPSFKGKL 168

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-RGKGLDGEKCTFSDLLYSLSEIKGLV 261
            SR+L   + E + L+  G  + + + Q+ +++ R  G+        D L +L  IKG+ 
Sbjct: 169 HSRTLESTLKEVQALVKQGFRDFSFISQDSSSYMRDLGV-------KDGLVAL--IKGID 219

Query: 262 RL----------RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
           +L          R    +P   S  LI+A  D  V + Y  +P+Q  S  +LK+M R H 
Sbjct: 220 KLVENGLDLRSARILYLYPSTTSKELIQAICDSKVFVNYFDMPLQHASPSVLKTMGRSH- 278

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
              ++ ++  +R   P+  + + FI+G PGE++ DF      +++  + +   F +S   
Sbjct: 279 --HFKDLLKEMRKT-PNSFVRTSFIIGHPGESESDFEELCAFIEEFPFDRMNLFAFSKEE 335

Query: 372 GTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-----KG 426
           GT  + M EQ+ +     RL  +     +Q  +   A   + I V+IE   +E       
Sbjct: 336 GTKSAEM-EQIPQKTINARLKAINAIFTKQYQADLKALKDEEIVVIIEGKSEESEYFYSA 394

Query: 427 KLVGRSPWLQSVVLNSKNHNIGDI----IKVRITDVKISTLYGELVV 469
           + V  +P +   +L + +   G++     KV+IT+V    + G ++ 
Sbjct: 395 RDVRFAPSIDGEILINDSLLEGELEAGYYKVKITEVVGENVLGRVIA 441


>gi|313203646|ref|YP_004042303.1| SSU ribosomal protein s12p methylthiotransferase [Paludibacter
           propionicigenes WB4]
 gi|312442962|gb|ADQ79318.1| SSU ribosomal protein S12P methylthiotransferase [Paludibacter
           propionicigenes WB4]
          Length = 434

 Score =  135 bits (339), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 116/453 (25%), Positives = 219/453 (48%), Gaps = 47/453 (10%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEKVYSFLGR 86
           V + GC  N+ DS ++   F + GY+  +  +  D +++++NTC     A E+  + + +
Sbjct: 12  VVTLGCSKNLVDSEQLMRQFDALGYQVRHDAEKPDGEIVIVNTCGFIGDAKEESINTILQ 71

Query: 87  IRNL-KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
             +L K ++I   G L V+  GC+++    E+    P V+   G   Y    ++L+    
Sbjct: 72  FADLRKQNKI---GKLFVM--GCLSERYLNELSLEIPEVDKFYGKFNY---TDILKE--- 120

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
               +  +Y  + + ER       Y       A++ I EGC++ C++C +P   G   SR
Sbjct: 121 ----IGQEYRADLRLERKLTTPNHY-------AYIKISEGCNRTCSYCAIPIITGRHRSR 169

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC-TFSDLLYSLSEIKGLVRLR 264
            +  + +E + L+ +GV E  L+ Q+++ +   G D  K    ++L   LS+I+G+  LR
Sbjct: 170 FIEDIENEVKGLVASGVKEFQLIAQDLSYY---GQDRYKSLKLAELTERLSDIQGVEWLR 226

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
              ++P      ++K   + D +  YL + +Q  SD +L  M R  T+ +  ++ID+IR 
Sbjct: 227 LHYAYPTQFPYDILKVMRERDNVCNYLDIALQHVSDNMLGKMRRNITSAQTYELIDKIRQ 286

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG-----SNML 379
             PDI + +  ++G PGET++D     + V K+ + +  +F +S   GT        N+ 
Sbjct: 287 EVPDIHLRTTLLLGHPGETEEDVEELKNFVQKVRFERLGAFAFSNEEGTYAYKTYEDNIP 346

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWL 435
           ++V +N +   ++ LQ+ +       N   +G+ ++V+I++   E    VGR    SP +
Sbjct: 347 DEVKQN-RVNEIMSLQQTI---SAEINQTKIGKTLKVMIDR--VEDEYFVGRTEYDSPEV 400

Query: 436 QSVVL---NSKNHNIGDIIKVRITDVKISTLYG 465
              VL   +++    G+    RI D     LYG
Sbjct: 401 DPEVLIPTSTEGVRQGEFFNARIFDATDFDLYG 433


>gi|260170245|ref|ZP_05756657.1| putative Fe-S oxidoreductase [Bacteroides sp. D2]
 gi|315918608|ref|ZP_07914848.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313692483|gb|EFS29318.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 436

 Score =  135 bits (339), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 117/450 (26%), Positives = 211/450 (46%), Gaps = 39/450 (8%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDD--ADLIVLNTCHIREKAAEKVYSFLGRIR 88
           + GC  N+ DS ++       GY   +  ++   ++ V+NTC     A E+  + +    
Sbjct: 10  TLGCSKNLVDSEQLMRQLEEVGYSVTHDTENPQGEIAVINTCGFIGDAKEESINMI---- 65

Query: 89  NLKNSRIKEGGDLL-VVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147
            L+ +  KE GDL  + V GC+++   +E+    P V+   G    +   ELL+    GK
Sbjct: 66  -LEFAERKEEGDLKKLFVMGCLSERYLKELAVEIPQVDKFYGK---FNWKELLQD--LGK 119

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
              D  Y      ER       Y       A+L I EGCD+ C++C +P   G  IS+ +
Sbjct: 120 VYHDELY-----IERTLTTPQHY-------AYLKISEGCDRKCSYCAIPIITGHHISKPI 167

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG-EKCTFSDLLYSLSEIKGLVRLRYT 266
            +++DE R L+  GV E  ++ Q +  +   G+D  +K    +L+  +S+I G+  +R  
Sbjct: 168 EEILDEVRYLVSQGVKEFQVIAQELTYY---GIDRYKKQMLPELIERISDIPGVEWIRLH 224

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
            ++P      L +   + D +  Y+ + +Q  SD +LK M R+ +  +  Q+I++ R   
Sbjct: 225 YAYPAHFPTDLFRVMRERDNVCKYMDIALQHISDNMLKLMRRQVSKEDTYQLIEQFRKEV 284

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE-QVDEN 385
           P I + +  +VG PGET++DF    + V K+ + +  +F YS   GT  +   E  + + 
Sbjct: 285 PGIHLRTTLMVGHPGETEEDFEDLKEFVRKVRFDRMGAFAYSEEEGTYAAETYEDSIPQE 344

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVVL- 440
           VK  RL  L    +      +   +G+ ++V+I++   E    +GR    SP +   VL 
Sbjct: 345 VKQARLDELMDIQQGISAELSAEKIGKQMKVIIDR--LEGDYYIGRTEFDSPEVDPEVLI 402

Query: 441 --NSKNHNIGDIIKVRITDVKISTLYGELV 468
             + +   IG   +V + +     LY +++
Sbjct: 403 DRSERELKIGQFYQVEVMNADDFDLYAKII 432


>gi|160882776|ref|ZP_02063779.1| hypothetical protein BACOVA_00737 [Bacteroides ovatus ATCC 8483]
 gi|156111800|gb|EDO13545.1| hypothetical protein BACOVA_00737 [Bacteroides ovatus ATCC 8483]
          Length = 436

 Score =  135 bits (339), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 117/450 (26%), Positives = 211/450 (46%), Gaps = 39/450 (8%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDD--ADLIVLNTCHIREKAAEKVYSFLGRIR 88
           + GC  N+ DS ++       GY   +  ++   ++ V+NTC     A E+  + +    
Sbjct: 10  TLGCSKNLVDSEQLMRQLEEVGYSVTHDTENPQGEIAVINTCGFIGDAKEESINMI---- 65

Query: 89  NLKNSRIKEGGDLL-VVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147
            L+ +  KE GDL  + V GC+++   +E+    P V+   G    +   ELL+    GK
Sbjct: 66  -LEFAERKEEGDLKKLFVMGCLSERYLKELAVEIPQVDKFYGK---FNWKELLQD--LGK 119

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
              D  Y      ER       Y       A+L I EGCD+ C++C +P   G  IS+ +
Sbjct: 120 VYHDELY-----IERTLTTPQHY-------AYLKISEGCDRKCSYCAIPIITGHHISKPI 167

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG-EKCTFSDLLYSLSEIKGLVRLRYT 266
            +++DE R L+  GV E  ++ Q +  +   G+D  +K    +L+  +S+I G+  +R  
Sbjct: 168 EEILDEVRYLVSQGVKEFQVIAQELTYY---GIDRYKKQMLPELIERISDIPGVEWIRLH 224

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
            ++P      L +   + D +  Y+ + +Q  SD +LK M R+ +  +  Q+I++ R   
Sbjct: 225 YAYPAHFPTDLFRVMRERDNVCKYMDIALQHISDNMLKLMRRQVSKEDTYQLIEQFRREV 284

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE-QVDEN 385
           P I + +  +VG PGET++DF    + V K+ + +  +F YS   GT  +   E  + + 
Sbjct: 285 PGIHLRTTLMVGHPGETEEDFEDLKEFVRKVRFDRMGAFAYSEEEGTYAAETYEDSIPQE 344

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVVL- 440
           VK  RL  L    +      +   +G+ ++V+I++   E    +GR    SP +   VL 
Sbjct: 345 VKQARLDELMDIQQGISAELSAEKIGKQMKVIIDR--LEGDYYIGRTEFDSPEVDPEVLI 402

Query: 441 --NSKNHNIGDIIKVRITDVKISTLYGELV 468
             + +   IG   +V + +     LY +++
Sbjct: 403 DRSERELKIGQFYQVEVVNADDFDLYAKII 432


>gi|322372210|ref|ZP_08046751.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haladaptatus
           paucihalophilus DX253]
 gi|320548219|gb|EFW89892.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haladaptatus
           paucihalophilus DX253]
          Length = 417

 Score =  135 bits (339), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 121/458 (26%), Positives = 208/458 (45%), Gaps = 58/458 (12%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R+ +++YGC  N  +S ++E      G+ RV   + AD+ ++NTC + EK      + + 
Sbjct: 3   RYHIETYGCTSNRGESRQIESALRDAGHYRVEGPEQADVAIMNTCTVVEKTER---NMVR 59

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R + L++    E  DL  ++ GC+A A+G+E   R+  V+  +    +  +P  +     
Sbjct: 60  RAKELQS----ETADL--IITGCMALAQGDEF--RTEDVDAQI--MHWDDVPTAVTNGE- 108

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                     VE       ++DG       V   L I  GC   C++C+  +  G   S 
Sbjct: 109 ---CPTPGPGVE------PVLDG-------VVGILPIARGCMSDCSYCITKHATGKIDSP 152

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLR 264
           S+ + V++AR L+  G  E+ + GQ+   +   G D GE+     L    +EI+G  R+R
Sbjct: 153 SVEENVEKARALVHAGAKELRITGQDTGVY---GWDRGERKLHVLLDRICNEIEGDFRVR 209

Query: 265 YTTSHPRDMS---DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
              ++P+ +    + L +   + D L  ++H PVQSGS+ +L  M R+H   EY +I++ 
Sbjct: 210 VGMANPKGVHGIREELAQVFAENDELYNFIHAPVQSGSNDVLGDMRRQHQVEEYVEIVET 269

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
                    +S+DFIVGFP ETDDD   +M L+ +    +    ++S R  T  + M   
Sbjct: 270 FDEYLDYWTLSTDFIVGFPTETDDDHEQSMALLRETRPEKLNVTRFSKRPNTDAAKM--- 326

Query: 382 VDENVKAERLLCLQKKLREQQVS---------FNDACVGQIIEVLIEKHGKEKGKLVGRS 432
                  + L   +KK R +++S           D  VG    V++ + G          
Sbjct: 327 -------KGLGGTKKKERSKEMSELKMDIVGAAYDEMVGTEKRVMVVEEGTGDSVKCRDE 379

Query: 433 PWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468
            + Q +V N+  H I  GD + V +T  +    +G  V
Sbjct: 380 AYRQIIVQNATEHGIEPGDFLDVEVTSHQTVYAFGTPV 417


>gi|84997025|ref|XP_953234.1| hypothetical protein [Theileria annulata strain Ankara]
 gi|65304230|emb|CAI76609.1| hypothetical protein, conserved [Theileria annulata]
          Length = 750

 Score =  135 bits (339), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 102/379 (26%), Positives = 185/379 (48%), Gaps = 37/379 (9%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + ++K++GC  N+ DS  M  +    GY    ++++ D++++N+C ++  +   + +++ 
Sbjct: 316 KIYLKNFGCSHNISDSEYMLGLISESGYTITENIEECDVVIINSCTVKNPSEHAMVNYIN 375

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNV--------VVGPQTYYRLP 137
           +   L N RI        +V GC+ Q++ +  +  + + NV         VG     ++ 
Sbjct: 376 QGLKL-NKRI--------IVTGCIPQSDKKHPVLSTSVTNVQFLNKLNNSVGIMQIDKII 426

Query: 138 ELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197
            ++E    G RVV     +E K   L  +D    RK  +   + I  GC   CTFC   +
Sbjct: 427 YVIENVMNGNRVV----LLEKK--SLPSLDLPKIRKNKLIEIIPISTGCLGSCTFCKTKH 480

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257
           +RG+  S  +  ++D     +  GV EI L  +++ A+   G+D      + LLYS+  I
Sbjct: 481 SRGVLNSYEIEAILDRVESSVSEGVKEIWLTSEDLGAY---GIDLGTNIIT-LLYSIINI 536

Query: 258 -KGLVRLRYTTSHPRDMSD-----CLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
               + LR    +P  +       C I +H   D +  ++H+PVQS SD +L+ MNR + 
Sbjct: 537 LPQNIMLRLGMCNPPYIKKYINEICEILSH---DNVFEFIHIPVQSCSDAVLEKMNREYL 593

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
             ++  I+  I++  P+  I++D I GFP ET+ D + T+  + ++  +     +Y  R 
Sbjct: 594 LEDFLYIVSVIKAKLPNCTIATDIICGFPTETEQDHQITVQTLQQLKLSIINISQYYSRK 653

Query: 372 GTPGSNMLEQVDENVKAER 390
           GT  S+M E +D NVK  R
Sbjct: 654 GTISSSMKE-LDNNVKKNR 671


>gi|77462893|ref|YP_352397.1| MiaB-like radical SAM protein [Rhodobacter sphaeroides 2.4.1]
 gi|77387311|gb|ABA78496.1| MiaB-like Radical SAM protein [Rhodobacter sphaeroides 2.4.1]
          Length = 436

 Score =  135 bits (339), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 115/398 (28%), Positives = 177/398 (44%), Gaps = 39/398 (9%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC   + DS R+     ++GY        AD +++NTC   + A  +    +G     
Sbjct: 17  SLGCPKALVDSERILTRLRAEGYAISPDYAGADAVIVNTCGFLDSAKVESLEAIGEA--- 73

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               ++E G   V+V GC+  AE + I    P V  V GP  Y             ++V+
Sbjct: 74  ----LRENGR--VIVTGCLG-AEPDYITGAHPKVLAVTGPHQY-------------EQVL 113

Query: 151 DTDY----SVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           D  +       D F  L    G     R  + +L I EGC+  C FC++P  RG   SR 
Sbjct: 114 DAVHGAVPPAPDPFVDLLPATGVRLTPRHFS-YLKISEGCNHTCRFCIIPDMRGRLASRP 172

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNA----WRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
              V+ EA KL++ GV E+ ++ Q+ +A    W+G     EK     L   L  +   VR
Sbjct: 173 ERAVLREAEKLVEAGVRELLVISQDTSAYGTDWKGP----EKFPILPLARELGRLGAWVR 228

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           L Y   +P       + A G   +++PYL +P Q     +LK M R   A      I   
Sbjct: 229 LHYVYPYPHVRELIPLMAEG---LVLPYLDIPFQHAHPEVLKRMARPAAAARTLDEIAAW 285

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R   P+IA+ S FIVG+PGET+ +F+  +D +D+    +   F+Y    G   + + + V
Sbjct: 286 RRDCPEIALRSTFIVGYPGETEAEFQTLLDWLDEAQLDRVGCFQYENVAGARSNALPDHV 345

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
              VK ER     +K +        A VG+ IEV++++
Sbjct: 346 APEVKQERWDRFMEKAQAISEVKLAAKVGRRIEVIVDE 383


>gi|73669341|ref|YP_305356.1| 2-methylthioadenine synthase [Methanosarcina barkeri str. Fusaro]
 gi|72396503|gb|AAZ70776.1| 2-methylthioadenine synthase [Methanosarcina barkeri str. Fusaro]
          Length = 442

 Score =  135 bits (339), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 117/449 (26%), Positives = 211/449 (46%), Gaps = 24/449 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERV--NSMDDADLIVLNTCHIREKAAEKVYSF 83
           + +++S+GC  +   +  M+      G++ +   + D A++ + N+C ++    +K+   
Sbjct: 2   KVYLESFGCSASQASAEIMKASVERLGHKLLGPEAADQAEVYICNSCTVKYTTEQKI--- 58

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE-- 141
           L +IR++    ++      V+V+GC+ + + E+IL  +P  +++ G     RL ELL   
Sbjct: 59  LYKIRSMGEKNVE------VIVSGCMPEVQLEDILHANPEAHIL-GVNAISRLGELLSLI 111

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
             R  K +   ++      E +  ++    R         I +GC+  C++C+V Y RG 
Sbjct: 112 EQRKMKGLPGGEHLEFRASEPVGFLNVPRERSNPNIHICQISQGCNFACSYCIVKYARGK 171

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
             S   + +V++ R  +  G  EI L  Q+ + +   G+D       +LL  +SEI G  
Sbjct: 172 LHSFPPNDIVEDIRAAVAGGCREIWLTSQDDSQY---GMD-TGVRLPELLRMISEIPGDF 227

Query: 262 RLRYTTSHPRD---MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           ++R    +P     + D L+ A  D D +   LHLP+QS S  +LK MNR H       I
Sbjct: 228 KVRVGMMNPFSVLPILDDLVDAF-DSDKVFKLLHLPIQSASHSVLKRMNRLHKMDVVDMI 286

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           I + R+   D+++ +D IVGF  ETDD+F  T++ V K    +    +YSPR  T   + 
Sbjct: 287 ITKFRARFEDLSLFTDIIVGFCDETDDEFEETVEWVQKYRPEKVNISRYSPRPHTKAFS- 345

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSV 438
              +D  +  +R   L K   + ++    A +G    V + K+  E G ++ R+   + V
Sbjct: 346 FRNLDSRILVQRSHELHKVCEQIKLGSKQAMIGWKGRVFVSKY-TEIGDVLTRTDAYRPV 404

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGEL 467
           V++  N   G    + I   K     G+L
Sbjct: 405 VISGSNLKPGQHANIEIVAAKPGYFLGKL 433


>gi|153806285|ref|ZP_01958953.1| hypothetical protein BACCAC_00541 [Bacteroides caccae ATCC 43185]
 gi|149130962|gb|EDM22168.1| hypothetical protein BACCAC_00541 [Bacteroides caccae ATCC 43185]
          Length = 436

 Score =  135 bits (339), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 120/456 (26%), Positives = 211/456 (46%), Gaps = 39/456 (8%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEKVYS 82
           +R  + + GC  N+ DS ++       GY   +  +    ++ V+NTC     A E+  +
Sbjct: 4   KRIDIITLGCSKNLVDSEQLMRQLEEVGYSVTHDTETPQGEIAVINTCGFIGDAKEESIN 63

Query: 83  FLGRIRNLKNSRIKEGGDLL-VVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
            +     L+ ++ KE GDL  + V GC+++    E+    P V+   G    +   ELL 
Sbjct: 64  MI-----LEFAKRKEEGDLKKLFVMGCLSERYLRELAIEIPQVDKFYGK---FNWKELLH 115

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
               GK      Y  E   ER       Y       A+L I EGCD+ C++C +P   G 
Sbjct: 116 D--LGK-----SYHEELYIERTLTTPQHY-------AYLKISEGCDRKCSYCAIPIITGR 161

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGL 260
            IS+ + +++DE R L+  GV E  ++ Q +  +   G+D  +K    +L+  +SEI G+
Sbjct: 162 HISKPIEEILDEVRYLVSQGVKEFQVIAQELTYY---GVDLYKKQMLPELIERISEIPGV 218

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
             +R   ++P      L +   +   +  Y+ + +Q  SD +LK M R+ T  +  ++I+
Sbjct: 219 EWIRLHYAYPAHFPIDLFRVMRERGNVCKYMDIALQHISDNMLKLMRRQVTKEDTYRLIE 278

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           + R   P I + +  +VG PGET++DF    + V K+ + +  +F YS   GT  +   E
Sbjct: 279 QFRKEVPGIHLRTTLMVGHPGETEEDFEELKEFVRKVRFDRMGAFAYSEEEGTYAAETYE 338

Query: 381 -QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWL 435
             + + VK  RL  L    +      +   VG+ ++++I++   E    +GR    SP +
Sbjct: 339 DSIPQKVKQARLDELMDIQQGISAELSAEKVGKQMKIIIDR--LEGDYYIGRTEFDSPEV 396

Query: 436 QSVVL---NSKNHNIGDIIKVRITDVKISTLYGELV 468
              VL   + K   IG   +V + D     LY +++
Sbjct: 397 DPEVLINCSEKELEIGKFYQVEVVDADDFDLYAKII 432


>gi|297379507|gb|ADI34394.1| RNA modification enzyme, MiaB family [Helicobacter pylori v225d]
          Length = 418

 Score =  135 bits (339), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 108/393 (27%), Positives = 186/393 (47%), Gaps = 41/393 (10%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF--FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           ++ + K++GC+ N++D+  M +    FS   E      +AD+I++N+C +   A   V S
Sbjct: 2   KKVYFKTFGCRTNLFDTQVMGENLKDFSATLEE----QEADIIIINSCTVTNGADSAVRS 57

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-E 141
           +  ++  L            V+  GC  + +G+E+  +   +  V G     ++  LL E
Sbjct: 58  YAKKMARLNKE---------VLFTGCGVKTQGKELFEKG-FLKGVFGHDNKEKINTLLQE 107

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           + RF       D ++E+K    ++V     + R   AF+ IQEGCD  C +C++P  RG 
Sbjct: 108 KKRFF-----IDDNLENKHLDTTMVSEFVGKTR---AFIKIQEGCDFDCNYCIIPSVRGR 159

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-RGKGLDGEKCTFSDLLYSLSEIKGL 260
             S    +++++   L   GV E+ L G NV ++ + KG        + L+  LS+I GL
Sbjct: 160 ARSFEERKILEQVGLLCSKGVQEVVLTGTNVGSYGKDKG-----SNIARLIKKLSQITGL 214

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R  +  P  + +       + D L  +LH+ +Q   D +L+ MNRR+     R++++
Sbjct: 215 KRIRIGSLEPNQI-NDEFLELLEEDFLEKHLHIALQHSHDFMLERMNRRNRTKSDRKLLE 273

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
            I S   + AI +DFIVG PGE+   F      ++ +       F YS R  TP S M +
Sbjct: 274 VIAS--KNFAIGTDFIVGHPGESGSVFEEAFKNLESLPLTHIHPFIYSKRKDTPSSLMTD 331

Query: 381 QVDENVKAERLLCLQ-------KKLREQQVSFN 406
            V      +RL  ++       K  R+ Q+  N
Sbjct: 332 SVSLEDSKKRLNAIKDLILHKNKAFRQLQLKLN 364


>gi|238066633|sp|Q3J3Y8|RIMO_RHOS4 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
          Length = 455

 Score =  135 bits (339), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 115/398 (28%), Positives = 177/398 (44%), Gaps = 39/398 (9%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC   + DS R+     ++GY        AD +++NTC   + A  +    +G     
Sbjct: 36  SLGCPKALVDSERILTRLRAEGYAISPDYAGADAVIVNTCGFLDSAKVESLEAIGEA--- 92

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               ++E G   V+V GC+  AE + I    P V  V GP  Y             ++V+
Sbjct: 93  ----LRENGR--VIVTGCLG-AEPDYITGAHPKVLAVTGPHQY-------------EQVL 132

Query: 151 DTDY----SVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           D  +       D F  L    G     R  + +L I EGC+  C FC++P  RG   SR 
Sbjct: 133 DAVHGAVPPAPDPFVDLLPATGVRLTPRHFS-YLKISEGCNHTCRFCIIPDMRGRLASRP 191

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNA----WRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
              V+ EA KL++ GV E+ ++ Q+ +A    W+G     EK     L   L  +   VR
Sbjct: 192 ERAVLREAEKLVEAGVRELLVISQDTSAYGTDWKGP----EKFPILPLARELGRLGAWVR 247

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           L Y   +P       + A G   +++PYL +P Q     +LK M R   A      I   
Sbjct: 248 LHYVYPYPHVRELIPLMAEG---LVLPYLDIPFQHAHPEVLKRMARPAAAARTLDEIAAW 304

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R   P+IA+ S FIVG+PGET+ +F+  +D +D+    +   F+Y    G   + + + V
Sbjct: 305 RRDCPEIALRSTFIVGYPGETEAEFQTLLDWLDEAQLDRVGCFQYENVAGARSNALPDHV 364

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
              VK ER     +K +        A VG+ IEV++++
Sbjct: 365 APEVKQERWDRFMEKAQAISEVKLAAKVGRRIEVIVDE 402


>gi|295084184|emb|CBK65707.1| SSU ribosomal protein S12P methylthiotransferase [Bacteroides
           xylanisolvens XB1A]
          Length = 436

 Score =  135 bits (339), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 116/456 (25%), Positives = 215/456 (47%), Gaps = 39/456 (8%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDD--ADLIVLNTCHIREKAAEKVYS 82
           +R  + + GC  N+ DS ++       GY   +  ++   ++ V+NTC     A E+  +
Sbjct: 4   KRIDIITLGCSKNLVDSEQLMRQLEEVGYSVTHDTENPQGEIAVINTCGFIGDAKEESIN 63

Query: 83  FLGRIRNLKNSRIKEGGDLL-VVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
            +     L+ +  KE GDL  + V GC+++   +E+    P V+   G    +   ELL+
Sbjct: 64  MI-----LEFAERKEEGDLKKLFVMGCLSERYLKELAVEIPQVDKFYGK---FNWKELLQ 115

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
               GK   D  Y      ER       Y       A+L I EGCD+ C++C +P   G 
Sbjct: 116 D--LGKVYHDELY-----IERTLTTPQHY-------AYLKISEGCDRKCSYCAIPIITGR 161

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG-EKCTFSDLLYSLSEIKGL 260
            IS+ + +++DE R L+  GV E  ++ Q +  +   G+D  +K    +L+  +S+I G+
Sbjct: 162 HISKPMEEILDEVRYLVSQGVKEFQVIAQELTYY---GIDRYKKQMLPELIERISDIPGV 218

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
             +R   ++P      L +   + D +  Y+ + +Q  SD +L+ M R+ +  +  ++I+
Sbjct: 219 EWIRLHYAYPAHFPTDLFRVMRERDNVCKYMDIALQHISDNMLQLMRRQVSKEDTYRLIE 278

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           + R   P I + +  +VG PGET++DF    + V K+ + +  +F YS   GT  +   E
Sbjct: 279 QFRKEVPGIHLRTTLMVGHPGETEEDFEELKEFVRKVRFDRMGAFAYSEEEGTYAAEAYE 338

Query: 381 -QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWL 435
             + + VK  RL  L    +      +   +G+ ++++I++   E    +GR    SP +
Sbjct: 339 DSIPQEVKQARLDELMDIQQGISAELSAEKIGKQMKIIIDR--LEGDYYIGRTEFDSPEV 396

Query: 436 QSVVL---NSKNHNIGDIIKVRITDVKISTLYGELV 468
              VL   + +   IG   +V +T+     LY +++
Sbjct: 397 DPEVLVKRSERELKIGQFYQVEVTNADDFDLYAKII 432


>gi|315638362|ref|ZP_07893541.1| Fe-S oxidoreductase [Campylobacter upsaliensis JV21]
 gi|315481573|gb|EFU72198.1| Fe-S oxidoreductase [Campylobacter upsaliensis JV21]
          Length = 436

 Score =  134 bits (338), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 99/370 (26%), Positives = 182/370 (49%), Gaps = 21/370 (5%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
            ++ S GC  N+ DS  M      + Y   +    AD++++NTC   E A ++    +  
Sbjct: 4   LYLHSLGCNKNLVDSEIMLGRL--ENYTLCDEPKRADVLIVNTCGFIESAKKES---IEA 58

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           I NL   R K     L+VV GC+ Q   EE++R  P V++  G   + ++  L+ + +  
Sbjct: 59  ILNLHKERKKNS---LLVVTGCLMQRYKEELMRALPEVDLFTGVGDFEKIDTLILKKQ-- 113

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
               ++ Y  E+  +R  ++ G  +      AF+ I EGC++ C FC +P+ +G   SR+
Sbjct: 114 NLFSNSTYLQEEGIKR--VITGSNSH-----AFIKISEGCNQSCAFCAIPHFKGRLKSRT 166

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
           +S ++ E   LI  G  + + + Q+ +++      G+K     L+  + ++KG+   R  
Sbjct: 167 ISSIIKELESLIAKGYKDFSFIAQDSSSYLFD--QGQKDGLLRLIEEVEKLKGIRAARIL 224

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
             +P  +S+ +++      V + Y  +P+Q  SD++LK M R     +  +++  +R  +
Sbjct: 225 YLYPSTLSEEVVRKIIASKVFVNYFDMPLQHISDKMLKVMKRGSKKEQILKLLKMMRGAK 284

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
            D  + + FIVG PGE+++DFR   + V+   + +   F YS    T    M EQV + +
Sbjct: 285 -DSFLRTGFIVGHPGESEEDFRELCEFVEGFDFDRISVFGYSKEEDTLAFEM-EQVPKKI 342

Query: 387 KAERLLCLQK 396
              RL  L+K
Sbjct: 343 INARLKILEK 352


>gi|66475406|ref|XP_627519.1| 2-methylthioadenine synthetase; MiaB [Cryptosporidium parvum Iowa
           II]
 gi|32398737|emb|CAD98697.1| conserved hypothetical transmembrane protein [Cryptosporidium
           parvum]
 gi|46228975|gb|EAK89824.1| 2-methylthioadenine synthetase; MiaB [Cryptosporidium parvum Iowa
           II]
          Length = 543

 Score =  134 bits (338), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 116/446 (26%), Positives = 206/446 (46%), Gaps = 35/446 (7%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +  VK++GC  N  DS  M  +    GY  V  +D+ +LIV+N+C ++  + +   + + 
Sbjct: 103 KIMVKNFGCNHNRSDSESMMGLLSEYGYTLVEELDECNLIVINSCTVKGPSQDSCQNLI- 161

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAE-GEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
               L  S+ K      VVV GCV QA+     L+   I+    G +  +R+ E++E   
Sbjct: 162 ---ELAKSKRK-----FVVVTGCVPQADINLNFLKDVSII----GVRNIHRIVEVVELTL 209

Query: 145 FGKRVVDTDYSVEDK----FERLSIVDGGYN----RKRGVTAFLTIQEGCDKFCTFCVVP 196
            G  V+     +E K     + L I     +    R+      +TI  GC   CT+C   
Sbjct: 210 QGNIVLLIPDKMEGKSGQLIDSLEISLPPLSLPKIRRNPFVEIITISVGCLGNCTYCKTK 269

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256
           ++RG   S  +  ++    + ++ GV +  L  +++ A+ GK +       S+LL  + +
Sbjct: 270 HSRGDLGSYPVETIIQRINQSLNEGVKQFWLTSEDIGAY-GKDIG---TNLSELLREILK 325

Query: 257 IKGL-VRLRYTTSHPR---DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
           I    + +R   ++P    D  D +I      +V   +LH+PVQSGS+RIL  M R +  
Sbjct: 326 ILPQDIMIRIGMTNPPYILDQIDEIIDIMKHPNVF-EFLHIPVQSGSNRILDLMKRDYVI 384

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
            E+  ++D I    P   I++D I GFPGE+D D   +++L++K  +      K+ PR G
Sbjct: 385 EEFSLLVDSILKEIPLATIATDIICGFPGESDQDHFQSVELINKYKFPVINISKFYPRPG 444

Query: 373 TPGSNMLEQVDENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV 429
           TP + M + V   V   R   +    +     +  F +    ++++V   +H +     V
Sbjct: 445 TPAAKM-KPVPNGVSKSRSSEITNTFQSFNHNEYIFENLPDDKVVKVWFIEHSERSNHTV 503

Query: 430 GRSPWLQSVVLNSKNHNIGDIIKVRI 455
           G +     V++N  N+ +G    V++
Sbjct: 504 GHTKNYNKVLVNMDNNLLGKCAMVKL 529


>gi|126461784|ref|YP_001042898.1| ribosomal protein S12 methylthiotransferase [Rhodobacter
           sphaeroides ATCC 17029]
 gi|238066580|sp|A3PIG0|RIMO_RHOS1 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|126103448|gb|ABN76126.1| MiaB-like tRNA modifying enzyme YliG [Rhodobacter sphaeroides ATCC
           17029]
          Length = 455

 Score =  134 bits (338), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 122/451 (27%), Positives = 196/451 (43%), Gaps = 44/451 (9%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC   + DS R+     ++GY        AD +++NTC   + A  +    +G     
Sbjct: 36  SLGCPKALVDSERILTRLRAEGYAISPDYAGADAVIVNTCGFLDSAKAESLEAIGEA--- 92

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               ++E G   V+V GC+  AE + +    P V  V GP  Y             ++V+
Sbjct: 93  ----LRENGR--VIVTGCLG-AEPDYVTGAHPKVLAVTGPHQY-------------EQVL 132

Query: 151 DTDY----SVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           D  +       D F  L    G     R  + +L I EGC+  C FC++P  RG   SR 
Sbjct: 133 DAVHGAVPPAPDPFVDLLPATGVRLTPRHFS-YLKISEGCNHTCRFCIIPDMRGRLASRP 191

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNA----WRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
              V+ EA KL++ GV E+ ++ Q+ +A    W+G     EK     L   L  +   VR
Sbjct: 192 ERAVLREAEKLVEAGVRELLVISQDTSAYGTDWKGP----EKFPILPLARELGRLGAWVR 247

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           L Y   +P       + A G   +++PYL +P Q     +LK M R   A      I   
Sbjct: 248 LHYVYPYPHVRELIPLMAEG---LVLPYLDIPFQHAHPEVLKRMARPAAAARTLDEIAAW 304

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R   P+I + S FIVG+PGET+ +F+  +D +D+    +   F+Y    G   + + + V
Sbjct: 305 RRDCPEITLRSTFIVGYPGETEAEFQTLLDWLDEAQLDRVGCFQYENVAGARSNALPDHV 364

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG--KLVGRSPWLQSVVL 440
              VK ER     +K +    +   A VG+ IEV++++  ++    +    +P +   + 
Sbjct: 365 APEVKQERWDRFMEKAQAISEAKLAAKVGRRIEVIVDEVDEDGATCRTKADAPEIDGNLF 424

Query: 441 ---NSKNHNIGDIIKVRITDVKISTLYGELV 468
                K    GDI+ V + +     L+G  V
Sbjct: 425 IDEGFKGLAPGDILTVEVEEAGEYDLWGRPV 455


>gi|188527091|ref|YP_001909778.1| hypothetical protein HPSH_01480 [Helicobacter pylori Shi470]
 gi|188143331|gb|ACD47748.1| hypothetical protein HPSH_01480 [Helicobacter pylori Shi470]
          Length = 418

 Score =  134 bits (338), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 110/393 (27%), Positives = 187/393 (47%), Gaps = 41/393 (10%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF--FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           ++ + K++GC+ N++D+  M +    FS   E      +AD+I++N+C +   A   V S
Sbjct: 2   KKVYFKTFGCRTNLFDTQVMGENLKDFSATLEE----QEADIIIINSCTVTNGADSAVRS 57

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-E 141
           +  ++  L            V+  GC  + +G+E+  +   +  V G     ++  LL E
Sbjct: 58  YAKKMARLNKE---------VLFTGCGVKTQGKELFEKG-FLKGVFGHDNKEKINALLQE 107

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           + RF       D ++E+K    ++V     + R   AF+ IQEGCD  C +C++P  RG 
Sbjct: 108 KKRFF-----IDDNLENKHLDTTMVSEFVGKTR---AFIKIQEGCDFDCNYCIIPSVRGR 159

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-RGKGLDGEKCTFSDLLYSLSEIKGL 260
             S    +++++   L   GV E+ L G NV ++ + KG        + L+  LS+I GL
Sbjct: 160 ARSFEERKILEQVGLLCSKGVQEVVLTGTNVGSYGKDKG-----SNIARLIKKLSQITGL 214

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R  +  P  + +       + D L  +LH+ +Q   D +L+ MNRR+     R++++
Sbjct: 215 KRIRIGSLEPNQI-NDEFLELLEEDFLEKHLHIALQHSHDFMLEKMNRRNRTKSDRELLE 273

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM-- 378
            I S   + AI +DFIVG PGE+   F      ++ +       F YS R  TP S M  
Sbjct: 274 VIAS--KNFAIGTDFIVGHPGESGSVFEEAFKNLESLPLTHIHPFIYSKRKDTPSSLMTD 331

Query: 379 ---LEQVDENVKAERLLCLQKK--LREQQVSFN 406
              LE   + + A + L L K    R+ Q+  N
Sbjct: 332 SVILEDSKKRLNAIKDLILHKNKAFRQLQLKLN 364


>gi|329963574|ref|ZP_08301053.1| ribosomal protein S12 methylthiotransferase RimO [Bacteroides
           fluxus YIT 12057]
 gi|328528563|gb|EGF55534.1| ribosomal protein S12 methylthiotransferase RimO [Bacteroides
           fluxus YIT 12057]
          Length = 432

 Score =  134 bits (338), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 118/449 (26%), Positives = 200/449 (44%), Gaps = 37/449 (8%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDD--ADLIVLNTCHIREKAAEKVYSFLGRIR 88
           + GC  N+ DS  +       GY   +        + V+NTC     A E+  + +    
Sbjct: 10  TLGCSKNLVDSEHLMRQLEEAGYHVTHDAQHPKGQIAVINTCGFIGDAKEESINMILEFA 69

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
             K    +EGG   + V GC+++   +E+    P V+   G   +  L + L +A     
Sbjct: 70  QAK----EEGGLEKLYVMGCLSERYLKELAIEIPQVDKFYGKFNWKELLQDLGKA----- 120

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
                Y  E   ER       Y       A+L I EGCD+ C++C +P   G  +SR + 
Sbjct: 121 -----YHDELHIERTLTTPKHY-------AYLKISEGCDRKCSYCAIPIITGKHVSRPME 168

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYTT 267
           +++DE R L+  GV E  ++ Q +  +   G+D  +K    +L+  +S+I G+  +R   
Sbjct: 169 EILDEVRYLVAGGVKEFQVIAQELTYY---GVDLYKKQMLPELIERISDIPGVEWIRLHY 225

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
           ++P    + L +   +   +  Y+ + +Q  SD +L  M R  T  E  Q+I+R R   P
Sbjct: 226 AYPAHFPEDLFRVMRERPNVCKYMDIALQHISDNMLGKMRRHVTKAETYQLIERFRKEVP 285

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV-DENV 386
            I + +  +VG PGET+ DF    + V K  + +  +F YS   GT  +   E V    V
Sbjct: 286 GIHLRTTLMVGHPGETEADFEELKEFVRKARFDRMGAFAYSEEEGTYAAATYEDVIPREV 345

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVVL-- 440
           K  RL  L    +      + A VG+ ++V+I++   E    VGR    SP +   VL  
Sbjct: 346 KQARLDELMAIQQGISAELSAAKVGKRMKVIIDR--LEGDYYVGRTEFDSPEVDPEVLIE 403

Query: 441 -NSKNHNIGDIIKVRITDVKISTLYGELV 468
              +  +IG+  +V + +     L+G ++
Sbjct: 404 CEDETLHIGNFYQVEVINSDDFDLFGRII 432


>gi|224436696|ref|ZP_03657700.1| hypothetical protein HcinC1_02049 [Helicobacter cinaedi CCUG 18818]
 gi|313143194|ref|ZP_07805387.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818]
 gi|313128225|gb|EFR45842.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818]
          Length = 427

 Score =  134 bits (338), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 103/390 (26%), Positives = 183/390 (46%), Gaps = 39/390 (10%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ + K++GC+ N++D+  M+       +E V    +AD++++N+C +   A   V  +L
Sbjct: 5   KKVYFKTFGCRTNLFDTQVMKSNL--GQFECVECESEADIVIVNSCTVTNGADAGVRGYL 62

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYY---RLPELLE 141
            ++R+L            V   GC     G+E+      +N+  G   +     + ELL+
Sbjct: 63  HKMRDLNKK---------VYFTGCGVGTRGQEVFS----LNLAYGVFAHSFKENIDELLQ 109

Query: 142 -RARFGKRVVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
            + RF        +  ED  E +  +IV     + R   AFL IQEGCD  C++C++P  
Sbjct: 110 NKERF--------FHKEDSPEHIDSTIVSEFVGKSR---AFLKIQEGCDFACSYCIIPSV 158

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258
           RG   S    +++ +   L ++G+ E+ L G NV ++ G+ LD         +Y+L  ++
Sbjct: 159 RGKARSYPKDKILKQILTLAESGISEVVLTGTNVGSY-GRDLDSNLAGLIREIYNLGVLR 217

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
              RLR  +  P  + D   K   +L ++  +LH+ +Q  SD +L+ MNR +      ++
Sbjct: 218 ---RLRIGSLEPSQI-DSEFKEVLELPIMEKHLHIALQHTSDTMLEIMNRHNRVESDLEL 273

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
            +     +    + SDFIVG PGE++  +   +             F YS R GTP S M
Sbjct: 274 FNYF--AQKGFCLGSDFIVGHPGESESVWEKALANFKLFPLTHLHPFVYSKRDGTPSSTM 331

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDA 408
              +  +V  +RL  L+  + +  V+F  A
Sbjct: 332 KNDIKGDVSKQRLHTLKDIVAQNNVAFRKA 361


>gi|317008935|gb|ADU79515.1| putative MiaB-like tRNA modifying enzyme [Helicobacter pylori
           India7]
          Length = 418

 Score =  134 bits (338), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 106/387 (27%), Positives = 185/387 (47%), Gaps = 38/387 (9%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF--FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           ++ + K++GC+ N++D+  M +    FS   E      +AD+I++N+C +   A   V S
Sbjct: 2   KKVYFKTFGCRTNLFDTQVMGENLKDFSATLEE----QEADIIIINSCTVTNGADSAVRS 57

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-E 141
           +  ++  L         D  V+  GC  + +G+E+  +   +  V G     ++  LL E
Sbjct: 58  YAKKMARL---------DKEVLFTGCGVKTQGKELFEKG-FLKGVFGHDNKEKINALLQE 107

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           + RF       D ++E+K    ++V     + R   AF+ IQEGCD  C +C++P  RG 
Sbjct: 108 KKRFF-----IDDNLENKHLDTTMVSEFVGKTR---AFIKIQEGCDFDCNYCIIPSVRGR 159

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW---RGKGLDGEKCTFSDLLYSLSEIK 258
             S    +++++   L   GV E+ L G NV ++   RG  +       + L+  LS+I 
Sbjct: 160 ARSFEERKILEQVDLLCSKGVQEVVLTGTNVGSYGKDRGSNI-------ARLIKKLSQIA 212

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           GL R+R  +  P  + +       + D L  +LH+ +Q   D +L+ MNRR+     R++
Sbjct: 213 GLKRIRIGSLEPNQI-NDEFLELLEEDFLEKHLHIALQHSHDFMLERMNRRNRTKSDREL 271

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           ++ I S   + AI +DFIVG PGE+   F      ++ +       F YS R  TP S M
Sbjct: 272 LEVIAS--KNFAIGTDFIVGHPGESGSVFEEAFKNLESLPLTHIHPFIYSKRKDTPSSLM 329

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSF 405
            + V      +RL  ++  +  +  +F
Sbjct: 330 CDSVSLEDSKKRLNAIKDLISHKNKAF 356


>gi|237716499|ref|ZP_04546980.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262408097|ref|ZP_06084645.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacteroides sp. 2_1_22]
 gi|294645091|ref|ZP_06722817.1| MiaB-like protein [Bacteroides ovatus SD CC 2a]
 gi|294809491|ref|ZP_06768194.1| MiaB-like protein [Bacteroides xylanisolvens SD CC 1b]
 gi|229444146|gb|EEO49937.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262354905|gb|EEZ03997.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacteroides sp. 2_1_22]
 gi|292639597|gb|EFF57889.1| MiaB-like protein [Bacteroides ovatus SD CC 2a]
 gi|294443309|gb|EFG12073.1| MiaB-like protein [Bacteroides xylanisolvens SD CC 1b]
          Length = 436

 Score =  134 bits (338), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 116/456 (25%), Positives = 215/456 (47%), Gaps = 39/456 (8%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDD--ADLIVLNTCHIREKAAEKVYS 82
           +R  + + GC  N+ DS ++       GY   +  ++   ++ V+NTC     A E+  +
Sbjct: 4   KRIDIITLGCSKNLVDSEQLMRQLEEVGYSVTHDTENPQGEIAVINTCGFIGDAKEESIN 63

Query: 83  FLGRIRNLKNSRIKEGGDLL-VVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
            +     L+ +  KE GDL  + V GC+++   +E+    P V+   G    +   ELL+
Sbjct: 64  MI-----LEFAERKEEGDLKKLFVMGCLSERYLKELAVEIPQVDKFYGK---FNWKELLQ 115

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
               GK   D  Y      ER       Y       A+L I EGCD+ C++C +P   G 
Sbjct: 116 D--LGKVYHDELY-----IERTLTTPQHY-------AYLKISEGCDRKCSYCAIPIITGR 161

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG-EKCTFSDLLYSLSEIKGL 260
            IS+ + +++DE R L+  GV E  ++ Q +  +   G+D  +K    +L+  +S+I G+
Sbjct: 162 HISKPMEEILDEVRYLVSQGVKEFQVIAQELTYY---GIDRYKKQMLPELIERISDIPGV 218

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
             +R   ++P      L +   + D +  Y+ + +Q  SD +L+ M R+ +  +  ++I+
Sbjct: 219 EWIRLHYAYPAHFPTDLFRVMRERDNVCKYMDIALQHISDNMLQLMRRQVSKKDTYRLIE 278

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           + R   P I + +  +VG PGET++DF    + V K+ + +  +F YS   GT  +   E
Sbjct: 279 QFRKEVPGIHLRTTLMVGHPGETEEDFEELKEFVRKVRFDRMGAFAYSEEEGTYAAESYE 338

Query: 381 -QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWL 435
             + + VK  RL  L    +      +   +G+ ++++I++   E    +GR    SP +
Sbjct: 339 DSIPQEVKQARLDELMDIQQGISAELSAEKIGKQMKIIIDR--LEGDYYIGRTEFDSPEV 396

Query: 436 QSVVL---NSKNHNIGDIIKVRITDVKISTLYGELV 468
              VL   + +   IG   +V +T+     LY +++
Sbjct: 397 DPEVLVKRSERELKIGQFYQVEVTNADDFDLYAKII 432


>gi|57241884|ref|ZP_00369824.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Campylobacter
           upsaliensis RM3195]
 gi|57017076|gb|EAL53857.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Campylobacter
           upsaliensis RM3195]
          Length = 436

 Score =  134 bits (338), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 101/370 (27%), Positives = 182/370 (49%), Gaps = 21/370 (5%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
            ++ S GC  N+ DS  M      + Y   +    AD++++NTC   E A ++    +  
Sbjct: 4   LYLHSLGCNKNLVDSEIMLGRL--ENYTLCDEPKRADVLIVNTCGFIESAKKES---IEA 58

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           I NL   R KE    L+VV GC+ Q   EE++R  P V++  G   + ++  L+ + +  
Sbjct: 59  ILNLHKER-KENS--LLVVTGCLMQRYKEELMRALPEVDLFTGVGDFEKIDTLILKKQ-- 113

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
               ++ Y  E+  +R  ++ G  +      AF+ I EGC++ C FC +P+ +G   SR 
Sbjct: 114 NLFSNSTYLQEEGVKR--VITGSNSH-----AFIKISEGCNQSCAFCAIPHFKGRLKSRE 166

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
           +S ++ E   LI  G  + + + Q+ +++      G+K     L+  + ++KG+   R  
Sbjct: 167 ISSIIKELESLISRGYKDFSFIAQDSSSYLFD--KGQKAGLLRLIEEVEKLKGIRVARIL 224

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
             +P  +S+ +++      V + Y  +P+Q  SD++LK M R     +  +++  +R  +
Sbjct: 225 YLYPSTLSEEVVRKIIASKVFVNYFDMPLQHISDKMLKVMKRGSKKEQILKLLKMMRGAK 284

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
            D  + + FIVG PGE+++DFR   + V+   + +   F YS    T    M EQV + V
Sbjct: 285 -DSFLRTGFIVGHPGESEEDFRELCEFVEGFDFDRISVFGYSKEEDTLAFEM-EQVPKKV 342

Query: 387 KAERLLCLQK 396
              RL  L+K
Sbjct: 343 INARLKILEK 352


>gi|237720682|ref|ZP_04551163.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|229449517|gb|EEO55308.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
          Length = 436

 Score =  134 bits (338), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 115/450 (25%), Positives = 212/450 (47%), Gaps = 39/450 (8%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDD--ADLIVLNTCHIREKAAEKVYSFLGRIR 88
           + GC  N+ DS ++       GY   +  ++   ++ V+NTC     A E+  + +    
Sbjct: 10  TLGCSKNLVDSEQLMRQLEEVGYSVTHDTENPQGEIAVINTCGFIGDAKEESINMI---- 65

Query: 89  NLKNSRIKEGGDLL-VVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147
            L+ +  KE GDL  + V GC+++   +E+    P V+   G    +   ELL+    GK
Sbjct: 66  -LEFAERKEEGDLKKLFVMGCLSERYLKELAVEIPQVDKFYGK---FNWKELLQD--LGK 119

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
              D  Y      ER       Y       A+L I EGCD+ C++C +P   G  IS+ +
Sbjct: 120 VYHDELY-----IERTLTTPQHY-------AYLKISEGCDRKCSYCAIPIITGHHISKPM 167

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG-EKCTFSDLLYSLSEIKGLVRLRYT 266
            +++DE R L+  GV E  ++ Q +  +   G+D  +K    +L+  +S+I G+  +R  
Sbjct: 168 EEILDEVRYLVSQGVKEFQVIAQELTYY---GIDRYKKQMLPELIERISDIPGVEWIRLH 224

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
            ++P      L +   + D +  Y+ + +Q  SD +L+ M R+ +  +  ++I++ R   
Sbjct: 225 YAYPAHFPTDLFRVMRERDNVCKYMDIALQHISDNMLQLMRRQVSKEDTYRLIEQFRKEV 284

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE-QVDEN 385
           P I + +  +VG PGET++DF    + V K+ + +  +F YS   GT  +   E  + + 
Sbjct: 285 PGIHLRTTLMVGHPGETEEDFEELKEFVRKVRFDRMGAFAYSEEEGTYAAKAYEDSIPQE 344

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVVL- 440
           VK  RL  L    +      +   +G+ ++++I++   E    +GR    SP +   VL 
Sbjct: 345 VKQARLDELMDIQQGISAELSAEKIGKQMKIIIDR--LEGDYYIGRTEFDSPEVDPEVLV 402

Query: 441 --NSKNHNIGDIIKVRITDVKISTLYGELV 468
             + +   IG   +V +T+     LY +++
Sbjct: 403 KRSERELKIGQFYQVEVTNADDFDLYAKII 432


>gi|206895616|ref|YP_002247217.1| Fe-S oxidoreductase [Coprothermobacter proteolyticus DSM 5265]
 gi|206738233|gb|ACI17311.1| Fe-S oxidoreductase [Coprothermobacter proteolyticus DSM 5265]
          Length = 388

 Score =  134 bits (338), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 102/360 (28%), Positives = 178/360 (49%), Gaps = 54/360 (15%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +F V  +GC++N YD+ R        G   V   +DAD+IVL +C +  KA  +V  F+ 
Sbjct: 2   KFAVHFFGCKVNQYDAARWT---IGLGKNYVAQPNDADIIVLFSCVVTHKAEAEVRRFVQ 58

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           + +                       A+G++I        ++ G  T   L +L + +  
Sbjct: 59  KWK-----------------------AQGKKI--------ILTGCGTNITLTDLADESVT 87

Query: 146 GKRVVDTDYSVED--KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             RV   D  ++    F    ++    +R RG   F+ ++EGC+  CT+CV    RG   
Sbjct: 88  LVRVDQLDSFMQQLGSFSAPKVIPFYPDRSRG---FVKVEEGCNWRCTYCVSSLERGEVR 144

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL--V 261
           SR L +++ E R + + G+ E+ L G N+  WR    +GEK  + DL+  +S++     +
Sbjct: 145 SRPLGEILQEIRLMSERGISEVVLTGTNLMLWR----EGEK-NYLDLIECVSKVAAEYNM 199

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMP---YLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           R+R ++ +P  ++  +I    +L  + P   +LH+ +QS SD++LKSMNR     +  Q+
Sbjct: 200 RVRLSSVYPEMINARMI----ELFCVYPLARHLHISLQSASDKVLKSMNRAPLG-DLTQM 254

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           + ++R++    A ++D IVG+P ET  D   TM  +  + +++   F +S R GTP S M
Sbjct: 255 LLQLRNLDSGFAFTADIIVGYPTETVQDSLMTMSFLSDLRFSKVHVFPFSVRPGTPASQM 314


>gi|149490145|ref|XP_001514441.1| PREDICTED: similar to CDK5 regulatory subunit associated protein
           1-like 1, partial [Ornithorhynchus anatinus]
          Length = 419

 Score =  134 bits (337), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 106/389 (27%), Positives = 185/389 (47%), Gaps = 46/389 (11%)

Query: 100 DLLVVVAGCVAQAEG-EEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSV-- 156
           D  VV+AGCV QA+  ++ ++   I+ V           + ++R           +SV  
Sbjct: 6   DKKVVLAGCVPQAQPRQDYMKGLSIIGV-----------QQIDRVVEVVEETVKGHSVRL 54

Query: 157 ----EDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
               +D  +R+  + +D    RK  +   ++I  GC   CT+C   + RG   S  + ++
Sbjct: 55  LGQKKDNGKRMGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDEL 114

Query: 211 VDEARKLIDNGVCEITLLGQNVNAW-RGKGLDGEKCTFSDLLYSLSEI--------KGLV 261
           V+ A++    GVCEI L  ++  A+ R  G D        LL+ L E+         G+ 
Sbjct: 115 VERAKQSFQEGVCEIWLTSEDTGAYGRDIGTD-----LPTLLWKLVEVIPEGAMLRLGMT 169

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
              Y   H   M+  L         +  +LH+PVQS SD +L  M R +   ++++++D 
Sbjct: 170 NPPYILEHLEAMAKILSHPR-----VYAFLHIPVQSASDSVLMGMKREYCVADFKRVVDF 224

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           ++   P I I++D I GFPGETD+DF+ T+ LV+   +   F  ++ PR GTP + M +Q
Sbjct: 225 LKEKVPGITIATDIICGFPGETDEDFQDTVKLVEDYRFPSLFINQFYPRPGTPAAKM-QQ 283

Query: 382 VDENVKAERLLCLQKKLREQQVSFN--DACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV 439
           V   VK +R     K+L +   S+N  D  +G+  +VL+ +   +    V  + + + V+
Sbjct: 284 VPAQVKKQRT----KELSQLFHSYNPYDHKIGERQQVLVTEESFDSKFYVAHNRFYEQVL 339

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
           +      +G +++V I +     L G+ V
Sbjct: 340 VPKNPQFMGKMVEVDIYESGKHFLKGQPV 368


>gi|154173652|ref|YP_001408590.1| 2-methylthioadenine synthetase [Campylobacter curvus 525.92]
 gi|112803882|gb|EAU01226.1| 2-methylthioadenine synthetase [Campylobacter curvus 525.92]
          Length = 444

 Score =  134 bits (337), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 111/401 (27%), Positives = 189/401 (47%), Gaps = 24/401 (5%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ DS  M        YE  N   +AD+I++NTC     A E+    +  + + 
Sbjct: 17  SLGCNKNLVDSEIMLGRL--SNYELTNETREADVIIVNTCGFIASAKEESVRVILEMADA 74

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
           K    K+G  L  VV GC+ Q   EE++R  P V++  G   Y ++ E+L + +      
Sbjct: 75  K----KQGATL--VVTGCLMQRYREELMRELPEVDLFTGVGDYDKIDEILLKKQNLFSPG 128

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
               S ED+     I    Y+      A++ I EGC++ C+FC +P  +G   SRSL  +
Sbjct: 129 TYLQSSEDRV----ITGSNYH------AYIKISEGCNQRCSFCAIPNFKGRLKSRSLENI 178

Query: 211 VDEARKLIDNGVCEITLLGQNVNAW-RGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSH 269
           V+E + L+  G  + + L Q+ +++ R +G+   K    +L+  + +I G+   R    +
Sbjct: 179 VNEVKNLVKKGFYDFSFLSQDSSSYMRDQGV---KDGLIELIDVVEKIDGVKSARILYLY 235

Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329
           P   SD LI+      V   Y  +P+Q  S+++L+ M R        Q++  +R+  P  
Sbjct: 236 PSTASDALIERIIASPVFHNYFDMPIQHISEKMLRLMKRGSGKDRIMQLLKMMRAA-PGS 294

Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAE 389
            + +  IVG P E+DDDF     L D+I + +  +F YS    T   +M  QV     ++
Sbjct: 295 FLRTGVIVGHPLESDDDFNELCALFDEIKFDRVSAFAYSREEDTAAFDM-AQVPTKTISK 353

Query: 390 RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG 430
           RL  ++K ++ +  +   A +G+ +   +E    E     G
Sbjct: 354 RLSMIEKIIKNEIDASFKAQLGKRVVASLEGQSSEGEMFFG 394


>gi|218262359|ref|ZP_03476856.1| hypothetical protein PRABACTJOHN_02530 [Parabacteroides johnsonii
           DSM 18315]
 gi|218223425|gb|EEC96075.1| hypothetical protein PRABACTJOHN_02530 [Parabacteroides johnsonii
           DSM 18315]
          Length = 200

 Score =  134 bits (337), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 81/201 (40%), Positives = 116/201 (57%), Gaps = 8/201 (3%)

Query: 273 MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAIS 332
           MSD  +    + D +   +HLP QSGS RILK MNR++T   Y   I  IR + PD AIS
Sbjct: 1   MSDETLHVIAEHDNICKMIHLPAQSGSSRILKVMNRKYTREWYLDRIAAIRRILPDCAIS 60

Query: 333 SDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML-EQVDENVKAERL 391
           +D   GF  ET++D+  T+ L+ ++GY  AF FKYS R GT  +  L + V E  K  RL
Sbjct: 61  TDLFCGFHSETEEDYEETLSLMREVGYDSAFLFKYSERPGTYAAQHLPDTVSEEEKVRRL 120

Query: 392 ---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVLNSKNHNI 447
              + LQ +L E+    N   +G++ EVLIE   K  + +L GR+   + V+ + KN+++
Sbjct: 121 QGMIDLQNRLSEES---NKRDIGKVFEVLIEGFSKRSREQLFGRTSQNKVVIFDKKNYHV 177

Query: 448 GDIIKVRITDVKISTLYGELV 468
           G  IKVRI     +TL+G+ V
Sbjct: 178 GQFIKVRIHRASSATLFGDPV 198


>gi|297706883|ref|XP_002830254.1| PREDICTED: CDK5 regulatory subunit-associated protein 1-like,
           partial [Pongo abelii]
          Length = 229

 Score =  134 bits (336), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 72/224 (32%), Positives = 124/224 (55%), Gaps = 24/224 (10%)

Query: 73  REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT 132
           REKA + +++ L +++ LK  R +    L + + GC+A+   EEIL R  +V+++ GP  
Sbjct: 8   REKAEQTIWNRLHQLKALKTRRPRSRVPLRIGILGCMAERLKEEILNREKMVDILAGPDA 67

Query: 133 YYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTF 192
           Y  LP LL  A  G++  +   S+++ +  +  V    +     +AF++I  GCD  C++
Sbjct: 68  YRDLPRLLAVAESGQQAANVLLSLDETYADVMPVQTSAS---ATSAFVSIMRGCDNMCSY 124

Query: 193 CVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR---------------G 237
           C+VP+TRG E SR ++ +++E +KL + G+ E+TLLGQNVN++R                
Sbjct: 125 CIVPFTRGRERSRPIASILEEVKKLSEQGLKEVTLLGQNVNSFRDNSEVQFNNAVPTNLS 184

Query: 238 KGLDGEKCT------FSDLLYSLSEIKGLVRLRYTTSHPRDMSD 275
           +G      T      F+ LL  +S +   +R+R+T+ HP+D  D
Sbjct: 185 RGFTTNYKTKQGGLRFAHLLDQVSRVDPEMRIRFTSPHPKDFPD 228


>gi|218261905|ref|ZP_03476578.1| hypothetical protein PRABACTJOHN_02249 [Parabacteroides johnsonii
           DSM 18315]
 gi|218223699|gb|EEC96349.1| hypothetical protein PRABACTJOHN_02249 [Parabacteroides johnsonii
           DSM 18315]
          Length = 431

 Score =  134 bits (336), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 120/448 (26%), Positives = 211/448 (47%), Gaps = 36/448 (8%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGY--ERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           + GC  N+ DS ++   F + GY  E      + +++V+NTC     A E+    +  I 
Sbjct: 10  TLGCSKNLVDSEQLMRQFVANGYTVEHDPHKINGEIVVVNTCGFIGDAQEES---INMIL 66

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
           +L  ++ K+G    + V GC+++   +++    P V+   G    +   ELL     GK 
Sbjct: 67  DLGEAK-KKGKIGKLFVMGCLSERFLKDLENELPEVDRFYGK---FNWKELLND--LGK- 119

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
                Y  E   +R+      Y       A+L I EGCD+ C++C +P + G   S  + 
Sbjct: 120 ----SYHRELAADRVLTTPRHY-------AYLKIAEGCDRTCSYCAIPISTGRYQSIPME 168

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYTT 267
           ++  E R L+  GV E  ++ Q++  +   GLD  ++    +L+  +S+I G+  +R   
Sbjct: 169 EIEKEVRLLVKQGVKEFQVIAQDLTYY---GLDLYKRHALPELVERISDIPGVEWIRLHY 225

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
            +P      L++   + D +  Y+ + +Q  SD +LK M R  T  E   +I R+R   P
Sbjct: 226 GYPSHFPYDLLRVMRERDNVCKYMDIALQHISDPMLKKMRRNITKEETYALIRRMREEVP 285

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG-SNMLEQVDENV 386
            I + +  +VG PGET+ DF   ++ V +  + +  +F YS   GT    +  + +D +V
Sbjct: 286 GIHLRTTLMVGHPGETEQDFEELVEFVKEARFERMGAFAYSHEEGTYSFKHYTDDIDPDV 345

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVVLNS 442
           K +RL  L +         N + +G+  +V+I++  +E    VGR    SP +   +L S
Sbjct: 346 KQDRLDYLMRIQEGISAEVNGSKIGKEFKVMIDR--EEDDFYVGRTEFDSPEVDPEILVS 403

Query: 443 KNHNI--GDIIKVRITDVKISTLYGELV 468
           K   +  G    VRI D +   LYG ++
Sbjct: 404 KEKPLIPGTFYNVRIDDAQAFDLYGSVL 431


>gi|318081364|ref|ZP_07988696.1| hypothetical protein SSA3_32842 [Streptomyces sp. SA3_actF]
          Length = 301

 Score =  134 bits (336), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 85/254 (33%), Positives = 127/254 (50%), Gaps = 12/254 (4%)

Query: 185 GCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK 244
           GCD+ C+FC +P  RG  ISR  S V+ E R L + GV E+ L+ +N N   GK L G+ 
Sbjct: 3   GCDRRCSFCAIPSFRGSFISRRPSDVLTETRWLAEQGVREVMLVSEN-NTSYGKDL-GDI 60

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304
                LL  L+ + G+ R+R +   P +M   LI        + PY  L  Q  +  +L+
Sbjct: 61  RLLETLLPELAAVDGIERVRVSYLQPAEMRPGLIDVLTSTPKIAPYFDLSFQHSAAGVLR 120

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA-----TMDLVDKIGY 359
           +M R      +  ++D+IR+  P+  + S+FIVGFPGET++D        T   +D IG 
Sbjct: 121 AMRRFGGTDSFLGLLDQIRAKAPEAGVRSNFIVGFPGETEEDVAELERFLTSARLDAIGV 180

Query: 360 AQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419
                F YS   GT  +    ++DE V AERL  + +   E      +  +G+ +EVL+E
Sbjct: 181 -----FGYSDEEGTEAATYATKLDEEVVAERLARVSRLAEELTAQRAEERIGETMEVLVE 235

Query: 420 KHGKEKGKLVGRSP 433
               E    +GR P
Sbjct: 236 SAATEDEPALGRGP 249


>gi|297620170|ref|YP_003708275.1| MiaB-like tRNA modifying protein [Methanococcus voltae A3]
 gi|297379147|gb|ADI37302.1| MiaB-like tRNA modifying enzyme [Methanococcus voltae A3]
          Length = 496

 Score =  134 bits (336), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 122/493 (24%), Positives = 222/493 (45%), Gaps = 69/493 (13%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYE----RVNSMDDAD--LIVLNTCHIREKA 76
           + Q+  ++ YGC +N  D+  +++    +G+       N + D +  L+V+NTC +R++ 
Sbjct: 23  IIQKVHLEGYGCTLNTSDTEIIKNSLIEKGFNVFTGNFNDLKDENINLVVINTCIVRQET 82

Query: 77  AEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL 136
             K+ S   +I+  K S  K      V+VAGC+A+A  +++     + + ++ P+  +  
Sbjct: 83  EHKMIS---KIKKYKESNKK------VIVAGCLAKALSKKV---EGLYDALIMPREAHLS 130

Query: 137 PELLERARFGKRVVDTDYSVEDKFER------LSIVDGGYN------------------- 171
            E+++    G +  + +  + D F++      +S +D   N                   
Sbjct: 131 GEIVKAVVEGYKPEEINNKI-DLFKKEVENSEISKIDNKLNYLLKNNCTENNNNNNNKIV 189

Query: 172 ----RKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITL 227
                   +   L I EGC   CT+C+V   RG  IS     ++ ++ +LI +G   + +
Sbjct: 190 NNTNNNTNLVMALPICEGCLGNCTYCIVKVARGNLISYEPKNIIKKSEELIKSGTKCLLI 249

Query: 228 LGQNVNAWRGKGLDG-EKCTFSDLLYSLSEIK-----------GLVRLRYTTSHPRDMSD 275
             Q+   +   G D  +K    +L+  + +             G++   Y  S      D
Sbjct: 250 TAQDTACY---GFDRRDKYRLPNLINDIVDNPNSKPFDFGIRIGMMHANYANS----FID 302

Query: 276 CLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDF 335
            LI+++    V+  +LHLP+QSG D +LK MNR +T  E+  ++   +    D+  ++D 
Sbjct: 303 ELIESYSSEKVI-KFLHLPIQSGDDNVLKDMNRGYTVDEFISVLGEFKRKVKDLNFTTDV 361

Query: 336 IVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQ 395
           IVGFP E+++ F  T++++ KI        KYS R  T    M +Q+D  ++ ER   L 
Sbjct: 362 IVGFPTESEEAFENTLEVMKKIKPDFTHGAKYSQRKYTLAGRM-KQIDTKIRKERSEILN 420

Query: 396 KKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRI 455
           K  RE     N   VGQ  E LI K G+       +  + +    N  N  +G+   ++I
Sbjct: 421 KLRREISFENNKRHVGQTFECLITKKGEAITSNCKKVLFNRFDEFNEFNAPVGEFKTLKI 480

Query: 456 TDVKISTLYGELV 468
           T+     L G L+
Sbjct: 481 TEAGTFGLKGRLI 493


>gi|78355553|ref|YP_387002.1| hypothetical protein Dde_0506 [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|123727796|sp|Q315T9|RIMO_DESDG RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|78217958|gb|ABB37307.1| SSU ribosomal protein S12P methylthiotransferase [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 430

 Score =  134 bits (336), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 121/428 (28%), Positives = 190/428 (44%), Gaps = 32/428 (7%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYE--RVNSMDDADLIVLNTC-HIREKAAEKVYSFLGRI 87
           S GC  N  D+   E +    G E   V  M DADL+++NTC  I     E V + +  +
Sbjct: 8   SLGCPKNRVDT---EWLLGVLGPEVRPVREMADADLVLINTCGFIAPAVEESVRTVVEAV 64

Query: 88  RNLKNSRIKEGGDLLVVVAGCVAQAEG-EEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
             L++   +     L+ VAGC+    G +++    P V++ +  +     PE++ RA   
Sbjct: 65  AELEDLPRRP----LLAVAGCLVGRYGRQDLAAELPEVDLWLTNRDMDAWPEMIGRA--- 117

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
                   +V     RL      Y       A+L + +GC   C+FC +P  RG  +S  
Sbjct: 118 -----LGVAVHVPPVRLLSTGPSY-------AYLKVSDGCGHNCSFCTIPSIRGGLVSTP 165

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
              +  EA  L+  GV E+  + Q+V A+ G+ + G +     LL  L  + GL RLR  
Sbjct: 166 ADVLEAEAVNLLSRGVKELIFVAQDVAAY-GRDM-GLRHGLRSLLDRLLPLDGLERLRLM 223

Query: 267 TSHPRDMSDCLIKAHGDL-DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
             +P  +   L++   D     +PY  +PVQ     +L  M R   A   R+++DR+R V
Sbjct: 224 YLYPAGLDAGLLRYLRDAGKPFVPYFDIPVQHAHPDVLSRMGRPF-ARNPREVVDRVRDV 282

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P+ A+ +  IVGFPGET   +      V  + +     F Y    GTP + M  QVDE 
Sbjct: 283 FPEAALRTSIIVGFPGETQQHYDHLTRFVQDVRFMHLGVFAYRAEEGTPAAGMPGQVDEV 342

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSPWLQSVVLNSKN 444
            K  R   L +   E      +   G   +VL++  H +  G  VGR+ W Q+  ++   
Sbjct: 343 EKDWRRDALMEVQAEISEEILEGFTGSDEDVLVDAAHEEWPGLHVGRT-WFQAPEIDGVT 401

Query: 445 HNIGDIIK 452
           +  G  +K
Sbjct: 402 YISGPGVK 409


>gi|327398341|ref|YP_004339210.1| MiaB-like tRNA modifying enzyme [Hippea maritima DSM 10411]
 gi|327180970|gb|AEA33151.1| MiaB-like tRNA modifying enzyme [Hippea maritima DSM 10411]
          Length = 410

 Score =  134 bits (336), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 111/394 (28%), Positives = 188/394 (47%), Gaps = 41/394 (10%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           +K+ GC++N Y++  M +    +G+E V+  D A+  ++N+C +  KA+++        R
Sbjct: 5   IKTLGCKLNQYETQLMIEDLTKEGHEIVDFEDMANFYIINSCAVTAKASKES-------R 57

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
            L  S  K G    VV  GC +  E E++  R     ++ G    +++ +L++       
Sbjct: 58  LLAKSAAKRG---RVVYTGCDSYLE-EKLKDRF----ILAGNSYKHKIIKLIKNP----- 104

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
               D S E K   L  +   Y  K    AF+ IQEGC+  CT+C++ + RG E  +   
Sbjct: 105 --INDISDETKTYPLERILSQYRGKS--RAFVKIQEGCNNHCTYCIISFLRGRERDKEKD 160

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
           +V+ E   L   G  EI L G N+ ++R             LL  +  ++G  R+R ++ 
Sbjct: 161 KVLSEIESLAKAGFSEIVLTGTNIGSYR---------DLKGLLRDIDALEGDFRVRISSI 211

Query: 269 HPR--DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
            P   D     I A G       +LH+P+QSGS++ILK M R +    Y +I++     +
Sbjct: 212 EPMYVDKEFIDIVASGR---FANHLHIPLQSGSNKILKLMGRNYKREHYEKIVNYCH--K 266

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM-LEQVDEN 385
             + +  D IVGF GETD+ F  T   V ++  + A  F YS R  TP  N+ L+     
Sbjct: 267 KGVFVGCDIIVGFFGETDELFEETYWFVKRLPLSYAHVFSYSKRPNTPAYNLKLDLPKGP 326

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419
           V  +R   L++   +++ +     +G+ +E +IE
Sbjct: 327 VVRQRNRKLRELFEQKKKNSIKQMIGKEVEFIIE 360


>gi|152965452|ref|YP_001361236.1| MiaB-like tRNA modifying enzyme YliG [Kineococcus radiotolerans
           SRS30216]
 gi|238066341|sp|A6W833|RIMO_KINRD RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|151359969|gb|ABS02972.1| MiaB-like tRNA modifying enzyme YliG [Kineococcus radiotolerans
           SRS30216]
          Length = 486

 Score =  134 bits (336), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 126/476 (26%), Positives = 215/476 (45%), Gaps = 45/476 (9%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC  N  DS  +       G+  V+  D AD+ V+NTC   E+A +     +     L
Sbjct: 15  TLGCARNDVDSEELAGRLADAGWTLVDDADGADVAVVNTCGFVEQAKKDSIDTV-----L 69

Query: 91  KNSRIKEGGDLLVVVA-GCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149
             + +KE G    VVA GC+A+  G+++    P  + ++G  +Y  L   LE    G++ 
Sbjct: 70  AAADLKEAGRTKAVVAVGCMAERYGKDLAESLPEADAILGFDSYGDLSSHLEAILHGEKP 129

Query: 150 ---VDTD------------------YSVEDKFERLSIVDGGYNRKR----GVTAFLTIQE 184
              V  D                   +  D  E L+   G    +R    G  A + I  
Sbjct: 130 QSHVPRDRRTLLPLAPAERQAARPVIAEPDLPEGLAPASGPRVVRRRLGSGPWAPVKIAA 189

Query: 185 GCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK 244
           GCD+ CTFC +P  RG  +SR   +V+ E R L + GV E+ L+ +N  ++ GK L G+ 
Sbjct: 190 GCDRRCTFCAIPAFRGSFVSRPAEEVLAETRWLAEQGVKEVFLVSENTTSY-GKDL-GDL 247

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304
                LL  ++ ++G+ R+R +   P ++   L+ A      ++PY  L  Q  S  +L+
Sbjct: 248 RALEALLPHVAAVEGIERVRVSYLQPAEVRPGLLDALTSTPGVVPYFDLSFQHSSPAVLR 307

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
            M R      +  +++++R   P   I S+ IVGFPGET+ D       +++        
Sbjct: 308 RMRRFGGTEPFLALLEQVRERHPQAGIRSNVIVGFPGETEADVDELCSFLERARLDVVGV 367

Query: 365 FKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE 424
           F YS   GT    +  ++ + V A R+  + + + E      +  +G+++EVL+E    E
Sbjct: 368 FGYSDEDGTEAETLDGKLPDEVVAARVDRVTRLVEELVTQRAEERLGEVVEVLVESVVDE 427

Query: 425 KG--KLVGRSPWLQSVVLNSKNH---------NIGDIIKVRITDVKISTLYGELVV 469
            G   +VGR+   Q   ++ +           ++GD++  R+T V  + L  E +V
Sbjct: 428 DGDPHVVGRAAH-QGPDVDGETELDLPAGFVVHVGDLVTARVTGVAGADLLAEPLV 482


>gi|15611340|ref|NP_222991.1| hypothetical protein jhp0270 [Helicobacter pylori J99]
 gi|11387381|sp|Q9ZMF0|Y285_HELPJ RecName: Full=Putative methylthiotransferase jhp_0270
 gi|4154794|gb|AAD05851.1| putative [Helicobacter pylori J99]
          Length = 418

 Score =  134 bits (336), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 108/395 (27%), Positives = 188/395 (47%), Gaps = 45/395 (11%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF--FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           ++ + K++GC+ N++D+  M +    FS   E      +AD+I++N+C +       V S
Sbjct: 2   KKVYFKTFGCRTNLFDTQVMGENLKDFSATLEE----QEADIIIINSCTVTNGTDSAVRS 57

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-E 141
           +  ++  L         D  V+  GC  + +G+E+  +  ++  V G     ++  LL E
Sbjct: 58  YARKMARL---------DKEVLFTGCGVKTQGKELFEKG-LLKGVFGHDNKEKINALLQE 107

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           + RF       D ++E+K    ++V     + R   AF+ IQEGCD  C +C++P  RG 
Sbjct: 108 KKRFF-----IDDNLENKHLDTTMVSEFVGKTR---AFIKIQEGCDFDCNYCIIPSVRGR 159

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW---RGKGLDGEKCTFSDLLYSLSEIK 258
             S    +++++   L   GV E+ L G NV ++   RG  +       + L+  LS+I 
Sbjct: 160 ARSFEERKILEQVGLLCSKGVQEVVLTGTNVGSYGKDRGSNI-------ARLIKKLSQIT 212

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           GL R+R  +  P  + +       + D L  +LH+ +Q   D +L+ MNRR+     R++
Sbjct: 213 GLKRIRIGSLEPNQI-NDEFLELLEEDFLEKHLHIALQHSHDFMLERMNRRNRTKSDREL 271

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           ++ I S   + AI +DFIVG PGE++  F      ++ +       F YS R  TP S M
Sbjct: 272 LEIIAS--KNFAIGTDFIVGHPGESESVFEKAFKNLESLPLTHIHPFIYSKRKDTPSSLM 329

Query: 379 LEQVDENVKAERLLCLQ-------KKLREQQVSFN 406
            + V      +RL  ++       K  R+ Q+  N
Sbjct: 330 RDSVSLEDSKKRLNAIKDLIFHKNKAFRQLQLKLN 364


>gi|149196637|ref|ZP_01873691.1| hypothetical protein LNTAR_09104 [Lentisphaera araneosa HTCC2155]
 gi|149140317|gb|EDM28716.1| hypothetical protein LNTAR_09104 [Lentisphaera araneosa HTCC2155]
          Length = 469

 Score =  134 bits (336), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 108/412 (26%), Positives = 192/412 (46%), Gaps = 45/412 (10%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V S GC  N+ D+  M       G      ++DAD+ V+NTC           SF+   R
Sbjct: 9   VSSLGCAKNLVDTEVMLGSMAKSGVVITGDLNDADIFVVNTC-----------SFIEGAR 57

Query: 89  NLKNSRIKEG-------GDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL-- 139
              N+ I +            VVVAGC+ Q   EE  +  P V++ +G      +  +  
Sbjct: 58  QESNAAIMDAITWKKKRKSRKVVVAGCLPQRSPEETKKNHPDVDLFLGLDDVASIGTMVN 117

Query: 140 -LERARFGKRVVDTD----YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCV 194
            L R       +  D    Y  ++   RL +    Y       A++ I EGC+  C+FC 
Sbjct: 118 NLLRKMPTMNTIQKDDLPVYLYDENTPRLLVTPSHY-------AYIKISEGCNHKCSFCA 170

Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL 254
           +P  RG   SR++  +V EA+ L++ GV EI L+ Q+   +     DG   + ++LL +L
Sbjct: 171 IPTFRGKLRSRTIESIVKEAQALLNRGVREIILVSQDSTGYGSDLKDG--SSTAELLKAL 228

Query: 255 SEI---KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
            ++   +  VRL Y   +P  ++D LI+       +  Y+ +P+Q G+D++LK+M R  T
Sbjct: 229 DKLDCDEYWVRLLYL--YPTTVTDELIETFAQSKHIAKYIDMPLQHGADKVLKTMRRGIT 286

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
                 ++D+ R   P + + +  +VG PGE +++F+  +D V +  + +   F YS   
Sbjct: 287 RKRTEILLDKFRKAMPGVVMRTTLLVGHPGEGEEEFQECLDFVKEQQFDRLGVFTYSHEE 346

Query: 372 GTPGSNMLEQVDENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
            T   ++ +  D    A R   ++ +Q+++  ++   N    GQ + V++++
Sbjct: 347 NTHARSLEDFTDPETSAARRDQIMAVQQEISYEK---NQRFAGQDLRVIVDE 395


>gi|71996771|ref|NP_740783.2| hypothetical protein Y92H12BL.1 [Caenorhabditis elegans]
 gi|75017352|sp|Q8MXQ7|CDKAL_CAEEL RecName: Full=CDKAL1-like protein
 gi|39752835|gb|AAM81103.2|AC084268_1 Hypothetical protein Y92H12BL.1 [Caenorhabditis elegans]
          Length = 425

 Score =  133 bits (335), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 104/365 (28%), Positives = 179/365 (49%), Gaps = 32/365 (8%)

Query: 105 VAGCVAQAEGEEILRRSPIVNV-VVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERL 163
           +AGCV+QA   E      + NV +VG +   R+ E++     G +V     +  D     
Sbjct: 1   MAGCVSQAAPSEPW----LQNVSIVGVKQIDRIVEVVGETLKGNKVRLLTRNRPD----- 51

Query: 164 SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLI-DNGV 222
           +++     RK  +   L+I  GC   CT+C     RG  +S  L+ +V++AR    D GV
Sbjct: 52  AVLSLPKMRKNELIEVLSISTGCLNNCTYCKTKMARGDLVSYPLADLVEQARAAFHDEGV 111

Query: 223 CEITLLGQNVNAW-RGKGLDGEKCTFSDLLYSLSEI--------KGLVRLRYTTSHPRDM 273
            E+ L  +++ AW R  GL        DLL  L ++         G+    Y   H  ++
Sbjct: 112 KELWLTSEDLGAWGRDIGL-----VLPDLLRELVKVIPDGSMMRLGMTNPPYILDHLEEI 166

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
           ++ L     +   +  +LH+PVQS SD +L  M R ++   + QI D + +  P+I I++
Sbjct: 167 AEIL-----NHPKVYAFLHIPVQSASDAVLNDMKREYSRRHFEQIADYMIANVPNIYIAT 221

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLC 393
           D I+ FP ET +DF  +M+LV K  +   F  +Y PR GTP +  L+++D  V+A +   
Sbjct: 222 DMILAFPTETLEDFEESMELVRKYKFPSLFINQYYPRSGTPAAR-LKKID-TVEARKRTA 279

Query: 394 LQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKV 453
              +L      + D  +G++  VL+ +   +K   VG +   + +++  +   +G+ I+V
Sbjct: 280 AMSELFRSYTRYTDERIGELHRVLVTEVAADKLHGVGHNKSYEQILVPLEYCKMGEWIEV 339

Query: 454 RITDV 458
           R+T V
Sbjct: 340 RVTAV 344


>gi|298484173|ref|ZP_07002339.1| 2-methylthioadenine synthetase [Bacteroides sp. D22]
 gi|298269677|gb|EFI11272.1| 2-methylthioadenine synthetase [Bacteroides sp. D22]
          Length = 436

 Score =  133 bits (335), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 115/456 (25%), Positives = 215/456 (47%), Gaps = 39/456 (8%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDD--ADLIVLNTCHIREKAAEKVYS 82
           +R  + + GC  N+ DS ++       GY   +  ++   ++ V+NTC     A E+  +
Sbjct: 4   KRIDIITLGCSKNLVDSEQLMRQLEEVGYSVTHDTENPQGEIAVINTCGFIGDAKEESIN 63

Query: 83  FLGRIRNLKNSRIKEGGDLL-VVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
            +     L+ +  KE GDL  + V GC+++   +E+    P V+   G    +   ELL+
Sbjct: 64  MI-----LEFAERKEEGDLKKLFVMGCLSERYLKELAVEIPQVDKFYGK---FNWKELLQ 115

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
               GK   D  Y      ER       Y       A+L I EGCD+ C++C +P   G 
Sbjct: 116 D--LGKGYHDELY-----IERTLTTPQHY-------AYLKISEGCDRKCSYCAIPIITGR 161

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG-EKCTFSDLLYSLSEIKGL 260
            IS+ + +++DE R L+  GV E  ++ Q +  +   G+D  +K    +L+  +S+I G+
Sbjct: 162 HISKPMEEILDEVRYLVSQGVKEFQVIAQELTYY---GIDRYKKQMLPELIERISDIPGV 218

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
             +R   ++P      L +   + D +  Y+ + +Q  SD +L+ M R+ +  +  ++I+
Sbjct: 219 EWIRLHYAYPAHFPTDLFRVMRERDNVCKYMDIALQHISDNMLQLMRRQVSKEDTYRLIE 278

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML- 379
           + R   P I + +  +VG PGET++DF    + V K+ + +  +F YS   GT  +    
Sbjct: 279 QFRKEVPGIHLRTTLMVGHPGETEEDFEELKEFVRKVRFDRMGAFAYSEEEGTYAAETYK 338

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWL 435
           + + + VK  RL  L    +      +   +G+ ++++I++   E    +GR    SP +
Sbjct: 339 DSIPQEVKQARLDELMDIQQGISAELSAEKIGKQMKIIIDR--LEGDYYIGRTEFDSPEV 396

Query: 436 QSVVL---NSKNHNIGDIIKVRITDVKISTLYGELV 468
              VL   + +   IG   +V +T+     LY +++
Sbjct: 397 DPEVLVKRSERELKIGQFYQVEVTNADDFDLYAKII 432


>gi|163744051|ref|ZP_02151418.1| RNA modification enzyme, MiaB-family protein [Phaeobacter
           gallaeciensis 2.10]
 gi|161382667|gb|EDQ07069.1| RNA modification enzyme, MiaB-family protein [Phaeobacter
           gallaeciensis 2.10]
          Length = 475

 Score =  133 bits (335), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 118/410 (28%), Positives = 183/410 (44%), Gaps = 51/410 (12%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC   + DS R+     ++GY        AD +++NTC   + A  +    +G     
Sbjct: 38  SLGCPKALVDSERILTRLRAEGYGVSPDYSGADAVIVNTCGFLDSAKAESLEAIGEA--- 94

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               +KE G   V+V GC+  AE + I    P +  V GP  Y             ++V+
Sbjct: 95  ----LKENGK--VIVTGCLG-AEPDYIRAHHPRILAVTGPHQY-------------EQVL 134

Query: 151 DTDYSV----EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           D  ++      + +  L    G     R  + +L I EGC+  C FC++P  RG   SR 
Sbjct: 135 DAVHAAVPPSPNPYVDLLPAAGVKLTPRHFS-YLKISEGCNHKCKFCIIPDMRGKLASRP 193

Query: 207 LSQVVDEARKLIDNGVCEITLLGQN-----------VNAWRGKGLDGE-KCTFSDLLYSL 254
              V+ EA KL+D GV E+ ++ Q+           VN W+    DGE +    DL   L
Sbjct: 194 AHAVLREAEKLVDAGVRELLVISQDTSAYGLDRKYDVNPWK----DGEVRSHIQDLSREL 249

Query: 255 SEIKG----LVRLRYTTSHPRDMSDCLIKAHGDLD-VLMPYLHLPVQSGSDRILKSMNRR 309
             +       VRL Y   +P      LI    D D  L+PYL +P Q     +L+ M R 
Sbjct: 250 GRLAPADELWVRLHYVYPYPHVRE--LIPLMADPDNALLPYLDIPFQHAHPDVLRRMARP 307

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369
             A +    I+  R+  PDI + S FIVG+PGET+ +F+  +D +D+    +   FKY  
Sbjct: 308 AAAAKTLDEINAWRATCPDITLRSTFIVGYPGETEAEFQHLLDWMDEAQLDRVGCFKYEN 367

Query: 370 RLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419
             G   +++ + V E VK +R     +K +    +   A VGQ + V+++
Sbjct: 368 VDGARSNDLADHVPEEVKQDRWDRFMEKAQAISEAKLAAKVGQTMLVIVD 417


>gi|126725177|ref|ZP_01741020.1| RNA modification enzyme, MiaB-family protein [Rhodobacterales
           bacterium HTCC2150]
 gi|126706341|gb|EBA05431.1| RNA modification enzyme, MiaB-family protein [Rhodobacterales
           bacterium HTCC2150]
          Length = 461

 Score =  133 bits (334), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 117/450 (26%), Positives = 200/450 (44%), Gaps = 36/450 (8%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC   + DS R+     ++GY        A+ +++NTC   + A  +    +G     
Sbjct: 33  SLGCPKALVDSERILTRLRAEGYAISPDYSGAEAVIVNTCGFLDSAKVESLEAIGEA--- 89

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               ++E G   V+V GC+  A+ E IL   P V  V GP  Y ++ + +  A       
Sbjct: 90  ----LQENG--RVIVTGCLG-ADSEYILGHHPTVLAVTGPHQYEQVLDAVHAAV------ 136

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
                  D F  L +   G +      ++L I EGC+  C FC++P  RG   SR    +
Sbjct: 137 ---PPAPDAFIDL-LPSSGVSLTPRHYSYLKISEGCNHKCKFCIIPDMRGRLSSRPAHAI 192

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT-------FSDLLYSLSEIKGLVRL 263
           V EA +L+D GV E+ ++ Q+ +A+   GLD    T        +DL   L  +   VRL
Sbjct: 193 VREAERLVDAGVKELLVISQDTSAY---GLDLRHATDRDHRAHITDLARDLGSLGAWVRL 249

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
            Y   +P  + D +       + ++PYL +P Q     +L+ M R   A +    I   R
Sbjct: 250 HYVYPYPH-VRDLIPIMADPTNGVLPYLDIPFQHAHPDVLRRMARPAAAAKTLDEIAAWR 308

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              PDI + S FIVG+PGET+ +F+  +D +D+    +   F+Y    G   + + + V 
Sbjct: 309 KDCPDITLRSTFIVGYPGETEAEFQTLLDWLDEAQLDRVGCFQYENVEGARSNALPDHVA 368

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG--KLVGRSPWLQSVVLN 441
           + +K +R     +K +    +     VG+ IEV+++    +    + +  +P +   +  
Sbjct: 369 DEIKQDRWNRFMEKSQAISEAKLATKVGRKIEVIVDSVEDDGATCRTMSDAPEIDGNLFI 428

Query: 442 SKNHN---IGDIIKVRITDVKISTLYGELV 468
            +       GD++ V + +     L+G LV
Sbjct: 429 DEGFEKLVAGDLLTVEVDEAGDYDLWGRLV 458


>gi|291280326|ref|YP_003497161.1| MiaB-like tRNA modifying enzyme YliG [Deferribacter desulfuricans
           SSM1]
 gi|290755028|dbj|BAI81405.1| MiaB-like tRNA modifying enzyme YliG [Deferribacter desulfuricans
           SSM1]
          Length = 449

 Score =  133 bits (334), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 100/376 (26%), Positives = 177/376 (47%), Gaps = 21/376 (5%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N  D   +      + +   N+ D+AD I++NTC   E A  +    +     L
Sbjct: 9   SLGCPKNQVDLEVLLGKMTDEDFMLTNNPDEADAIIINTCGFIEPAVMEAVETI-----L 63

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
           +    KE G   ++V GC+ +    E  +  P V+   G      + + L+     K+  
Sbjct: 64  EFESYKEKGKK-IIVTGCMVERYKNEFEKEFPFVDYYTGVGELKSVIDFLKNNSKPKQTE 122

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
              Y  ++   R+ +    +       A+L I +GC   C++C +P  RG + SR +  +
Sbjct: 123 KNLYFSKN---RVILNPQSF-------AYLKIADGCRNRCSYCTIPSIRGTQKSRKIEDI 172

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270
           ++EA++LID GV E+ L+ Q+   + G  + G       LL  LS ++G   +R    +P
Sbjct: 173 LEEAQRLIDGGVKELILISQDTTKY-GIDIYGS-FMIKPLLEKLSSLEGDFYIRTLYLNP 230

Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330
             +   LI    +   ++ Y  +P+Q  +DRILK MNR+  +   ++I   I+    D  
Sbjct: 231 DGVDGELIDIILNNPKIINYFEIPIQHINDRILKLMNRKFNSSHIKKIFTLIKEKSEDAF 290

Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV---DENVK 387
           I + FIVGFP ET+++F   +D + +     A  F + P  G   S M  Q+   ++N +
Sbjct: 291 IRTTFIVGFPSETEEEFNEIIDFLHEFKPDFAGFFPFYPEDGVKASTMDGQISKREKNKR 350

Query: 388 AERLLCLQKKLREQQV 403
            ++L  +QKK+  +++
Sbjct: 351 VKQLEKIQKKITSERL 366


>gi|94263081|ref|ZP_01286900.1| MiaB-like tRNA modifying enzyme [delta proteobacterium MLMS-1]
 gi|93456624|gb|EAT06732.1| MiaB-like tRNA modifying enzyme [delta proteobacterium MLMS-1]
          Length = 470

 Score =  133 bits (334), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 106/396 (26%), Positives = 187/396 (47%), Gaps = 14/396 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLR-MEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           +R  V + GC++N Y+S   + ++   +G E V     AD+ V+NTC +  +A  +    
Sbjct: 10  KRVAVTTLGCKVNQYESAAFLSELAEREGVEIVPFEQAADVYVINTCAVTARAGAQSRQL 69

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           + R    + +R+        VV GC AQ   +E+L        +VG     R+ ++    
Sbjct: 70  IRRAARCRRARL--------VVTGCYAQVAPQEVLELVGNPLCIVGNAHKERVAQIAAAG 121

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           R     +      + +     +V     R R V   L +Q+GC + C++C+VP  RG   
Sbjct: 122 RSCDLEMYHGEMGDCRQVAPLLVKAATARSRAV---LKVQDGCSQACSYCIVPRARGRSR 178

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           S    +V+ +A      G  E  L G ++  + G+ L         L   L+    L R 
Sbjct: 179 SVLPERVLRQAEIFAAAGHREAVLTGIHLGHY-GRDLTPPGSLLGLLEQLLARDLPL-RY 236

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R ++    ++   L+        L+P+LH+P+QSG DRIL++MNR +   ++  +I+R  
Sbjct: 237 RLSSLEATEIGPDLLALLAAESRLLPHLHIPLQSGDDRILRAMNRPYDRAQFAAVIERCA 296

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           +  P+ AI  D + GFPGE +  F+ T +L+  +  +    F YS R GTP + + +QV 
Sbjct: 297 AALPEAAIGIDVMTGFPGEDEPAFQHTYELLAALPISYLHVFPYSQRAGTPAARLPDQVP 356

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419
             V+ +R   L++    ++++F    +G+   VL+E
Sbjct: 357 GPVRDQRAARLRELGESKKIAFYQRFLGRQRRVLVE 392


>gi|328773588|gb|EGF83625.1| hypothetical protein BATDEDRAFT_1672 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 446

 Score =  133 bits (334), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 119/471 (25%), Positives = 210/471 (44%), Gaps = 67/471 (14%)

Query: 28  FVKSYGCQMNVYDSLRMEDMFFSQGYERV---NSMDDADLIVLNTCHIREKAAEKVYSFL 84
           FVK++GC  N  D   M  +  + GY  +   +  ++A + VLN+C ++  + +   +F+
Sbjct: 8   FVKTWGCGHNNSDGEYMAGLLAADGYNVILDHSKAEEAQVWVLNSCTVKGPSQQ---TFV 64

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAE--GEEILRRSPIVNVVVGPQTYYRLPELLER 142
             I   K +  K      +VVAGCV QA    +E    S     V+G Q   ++  ++E 
Sbjct: 65  NDIDKGKLAGKK------IVVAGCVPQASPSNDEWKGLS-----VIGVQQIDQVVRVVEE 113

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYN------RKRGVTAFLTIQEGCDKFCTFCVVP 196
              G  +     + E   + +    GG        R+      + I  GC   CT+C   
Sbjct: 114 TLKGNTIRLMKEAKEVSADGVKRKAGGARLDLPKVRRNPFIEIIPINTGCLNQCTYCKTK 173

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-RGKG------LDG-----EK 244
           + RG   S SL++++     ++  GV EI L  ++  A+ R  G      L+G     +K
Sbjct: 174 HARGDLGSYSLAEIIARVESVLHEGVKEIWLTSEDTGAYGRDIGVSIVDLLEGILVAMDK 233

Query: 245 CTFSDLL---------YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPV 295
               D +         Y L  +KG+ ++    +HP+  S               +LH+PV
Sbjct: 234 HIVQDAMLRVGMTNPPYILEHLKGIAKV---LNHPKVYS---------------FLHVPV 275

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
           Q+GS ++L  M R +   ++ +++D +R   P + I++D I GFP ETD+DF  TM L++
Sbjct: 276 QAGSTKVLDDMRRLYAVQDFERVVDVLREKVPCVTIATDIICGFPTETDEDFDETMHLLE 335

Query: 356 KIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIE 415
           K  ++     ++ PR GTP + M +++  N+   R    +     +  +  D+ VG I +
Sbjct: 336 KYKFSVLHISQFYPRPGTPAARM-KRISTNIVKNR--SRRATTFFESYTTYDSLVGTIQK 392

Query: 416 VLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGE 466
           +L+ +   +    VG +   Q +++      +G    VRI       L GE
Sbjct: 393 ILVTEQSADGNHYVGHNKPYQQILVPKNEKLMGQTFHVRIVRASKFYLMGE 443


>gi|154492267|ref|ZP_02031893.1| hypothetical protein PARMER_01901 [Parabacteroides merdae ATCC
           43184]
 gi|154087492|gb|EDN86537.1| hypothetical protein PARMER_01901 [Parabacteroides merdae ATCC
           43184]
          Length = 431

 Score =  132 bits (333), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 119/448 (26%), Positives = 211/448 (47%), Gaps = 36/448 (8%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGY--ERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           + GC  N+ DS ++   F + GY  E      + +++V+NTC     A E+    +  I 
Sbjct: 10  TLGCSKNLVDSEQLMRQFVANGYTVEHDPHKINGEIVVVNTCGFIGDAQEES---INMIL 66

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
           +L  ++ K+G    + V GC+++   +++    P V+   G    +   ELL     GK 
Sbjct: 67  DLGEAK-KKGKIGKLFVMGCLSERFLKDLENELPEVDRFYGK---FNWKELLND--LGK- 119

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
                Y  E   +R+      Y       A+L I EGCD+ C++C +P + G   S  + 
Sbjct: 120 ----SYHRELAADRVLTTPRHY-------AYLKIAEGCDRTCSYCAIPISTGRYQSIPME 168

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYTT 267
           ++  E R L+  GV E  ++ Q++  +   GLD  ++    +L+  +S+I G+  +R   
Sbjct: 169 EIEKEVRLLVKQGVKEFQVIAQDLTYY---GLDLYKRHALPELVERISDIPGVEWIRLHY 225

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
            +P      L++   + D +  Y+ + +Q  SD +LK M R  T  E   +I R+R   P
Sbjct: 226 GYPSHFPYDLLRVMSERDNVCKYMDIALQHISDPMLKKMRRNITKEETYALIRRMREEVP 285

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG-SNMLEQVDENV 386
            I + +  +VG PGET+ DF   ++ V +  + +  +F YS   GT    +  + +D  V
Sbjct: 286 GIHLRTTLMVGHPGETEQDFEELVEFVKEARFERMGAFAYSHEEGTYSFKHYTDDIDPEV 345

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVVLNS 442
           K +RL  L +         N + +G++ +V+I++  +E+   VGR    SP +   +L S
Sbjct: 346 KQDRLDYLMRIQEGISAEVNGSKIGKVFKVMIDR--EEEDFYVGRTEFDSPEVDPEILVS 403

Query: 443 KNHNI--GDIIKVRITDVKISTLYGELV 468
           K   +  G    V I D +   LYG ++
Sbjct: 404 KEKLLIPGMFYNVWIDDAQAFDLYGSVL 431


>gi|291295078|ref|YP_003506476.1| RNA modification enzyme, MiaB family [Meiothermus ruber DSM 1279]
 gi|290470037|gb|ADD27456.1| RNA modification enzyme, MiaB family [Meiothermus ruber DSM 1279]
          Length = 440

 Score =  132 bits (333), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 120/445 (26%), Positives = 200/445 (44%), Gaps = 30/445 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R  VK+ GC++N  +S  +  +        V     ADL+V+NTC +   A         
Sbjct: 8   RLAVKTLGCKVNQVESDALVGLLKPLQPVVVPLEAGADLVVINTCAVTTSAEADA----- 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
             R       +      +VV GC A+   +++       +VV+       LP ++ + RF
Sbjct: 63  --RKEVRRARRANPAAFIVVTGCYAELAPDQLAELG--ADVVLPNSRKAELPGVILQ-RF 117

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G   +  D       E     + G      V AFL +Q+GC+  C +C++P  RG E  R
Sbjct: 118 G---LPADPITTPPNEFWGAGERGLLNNY-VRAFLKVQDGCNAGCAYCIIPRLRGRERHR 173

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRG--KGLDGEKCTFSDLLYSLSEIKGLVRL 263
                + EA  L++ GV EI L G  + +++G  +G+ G       L+  L+ +   VRL
Sbjct: 174 GYRDALSEAGALLEAGVQEIVLTGVRLGSYKGHPRGIAG-------LVEELALMGAKVRL 226

Query: 264 RYTTSHPRDMSDCLIKAHGDLDV-LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
             ++  P D  D L++        + P+LHL +Q+GS R+L  M RR+    YR++  + 
Sbjct: 227 --SSIEPEDTGDELLRVMQRFAPQVRPHLHLSLQTGSGRLLALMGRRYDKNYYRELAQKA 284

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
               P  A+++D I G P ET+D+ + T+  ++++  ++   F Y+PR  T  ++ L QV
Sbjct: 285 YDWIPGFALTTDVIAGLPTETEDEHQETLAFLEEVRPSRVHVFTYTPRPKTRAAS-LPQV 343

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
              ++  R   LQ        +     +G  +EVL+E      GK  G +P    V    
Sbjct: 344 PIEIRKRRNKELQALAARLAEARVRPKLGGAVEVLVESF--RGGKAYGHTPDYYEVEFTG 401

Query: 443 KNHNIGDIIKVRITDVKISTLYGEL 467
           +   IG    VR+  ++  TL G L
Sbjct: 402 QA-RIGQTAWVRVEAIEGYTLRGAL 425


>gi|67623743|ref|XP_668154.1| transmembrane protein [Cryptosporidium hominis TU502]
 gi|54659343|gb|EAL37924.1| transmembrane protein [Cryptosporidium hominis]
          Length = 543

 Score =  132 bits (333), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 119/472 (25%), Positives = 221/472 (46%), Gaps = 40/472 (8%)

Query: 2   GLFIKLIGVAHMVSQIVDQCIVP--QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSM 59
           GL I+ +   ++ S+   +  VP   +  VK++GC  N  DS  M  +    GY  V  +
Sbjct: 80  GLIIRAVNNLNIQSE---EGFVPGIAKIMVKNFGCNHNRSDSESMMGLLSEYGYTLVEEL 136

Query: 60  DDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILR 119
           D+ +LIV+N+C ++  + +   + +     L  S+ K      VVV GCV QA+    + 
Sbjct: 137 DECNLIVINSCTVKGPSQDSCQNLI----ELAKSKRK-----FVVVTGCVPQAD----IN 183

Query: 120 RSPIVNV-VVGPQTYYRLPELLERARFGKRVVDTDYSVE-------DKFE-RLSIVDGGY 170
            + + +V ++G +  +R+ E++E    G  V+     +E       D  E  L  +    
Sbjct: 184 LNFLKDVSIIGVRNIHRIVEVVELTLQGNIVLLIPDKMEGKSGQLIDSLEMSLPPLSLPK 243

Query: 171 NRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQ 230
            R+      +TI  GC   CT+C    +RG   S  +  ++    + ++ GV +  L  +
Sbjct: 244 IRRNPFVEIITISVGCLGNCTYCKTKQSRGDLGSYPIETIIQRINQSLNEGVKQFWLTSE 303

Query: 231 NVNAWRGKGLDGEKCTFSDLLYSLSEIKGL-VRLRYTTSHPR---DMSDCLIKAHGDLDV 286
           ++ A+ GK +       S+LL  + +I    + +R   ++P    D  D +I      +V
Sbjct: 304 DIGAY-GKDIG---TNLSELLREILKILPQDIMIRIGMTNPPYILDQIDEIIDIMKHPNV 359

Query: 287 LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDD 346
              +LH+PVQSGS+RIL  M R +   E+  ++D I    P   I++D I GFPGE+D D
Sbjct: 360 F-EFLHIPVQSGSNRILDLMKRDYVIEEFSLLVDSILKEIPLATIATDIICGFPGESDQD 418

Query: 347 FRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV---KAERLLCLQKKLREQQV 403
              +++L++K  +      K+ PR GTP + M + V   V   ++  +  + +     + 
Sbjct: 419 HFQSVELINKYKFPVINISKFYPRPGTPAAKM-KPVPNGVSKGRSSEITNIFQSFNHNEY 477

Query: 404 SFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRI 455
            F +    ++++V   +H +     VG +     V++N  ++ +G    V++
Sbjct: 478 IFENLPDDKVVKVWFIEHSERSNHTVGHTKNYNKVLVNMDSNLLGKCAMVKL 529


>gi|308063147|gb|ADO05034.1| hypothetical protein HPSAT_01425 [Helicobacter pylori Sat464]
          Length = 418

 Score =  132 bits (333), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 110/395 (27%), Positives = 187/395 (47%), Gaps = 45/395 (11%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF--FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           ++ + K++GC+ N++D+  M +    FS   E      +AD+I++N+C +   A   V S
Sbjct: 2   KKVYFKTFGCRTNLFDTQVMGENLKDFSATLEE----QEADIIIINSCTVTNGADSAVRS 57

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-E 141
           +  ++  L            V+  GC  + +G+E+  +   +  V G     ++  LL E
Sbjct: 58  YAKKMARLNKE---------VLFTGCGVKTQGKELFEKG-FLKGVFGHDNKEKINALLQE 107

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           + RF       D ++E+K    ++V     + R   AF+ IQEGCD  C +C++P  RG 
Sbjct: 108 KKRFF-----IDDNLENKHLDTTMVSEFVGKTR---AFIKIQEGCDFDCNYCIIPSVRGR 159

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW---RGKGLDGEKCTFSDLLYSLSEIK 258
             S    +++++   L   GV E+ L G NV ++   RG  +       + L+  LS+I 
Sbjct: 160 ARSFEERKILEQVGLLCSKGVQEVVLTGTNVGSYGKDRGSNI-------ARLIKKLSQIT 212

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           GL R+R  +  P  + +       + D L  +LH+ +Q   D +L+ MNRR+     R++
Sbjct: 213 GLKRIRIGSLEPNQI-NDEFLELLEEDFLEKHLHIALQHSHDFMLERMNRRNRTKSDREL 271

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           ++ I S   + AI +DFIVG PGE+   F      ++ +       F YS R  TP S M
Sbjct: 272 LEIIAS--KNFAIGTDFIVGHPGESGSVFEEAFKNLESLPLTHIHPFIYSKRKDTPSSLM 329

Query: 379 -----LEQVDENVKAERLLCL--QKKLREQQVSFN 406
                LE   + + A + L L   K  R+ Q+  N
Sbjct: 330 TDSVILEDSKKRLNAIKDLILYKNKAFRQLQLKLN 364


>gi|288800012|ref|ZP_06405471.1| 2-methylthioadenine synthetase [Prevotella sp. oral taxon 299 str.
           F0039]
 gi|288333260|gb|EFC71739.1| 2-methylthioadenine synthetase [Prevotella sp. oral taxon 299 str.
           F0039]
          Length = 431

 Score =  132 bits (332), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 114/453 (25%), Positives = 208/453 (45%), Gaps = 46/453 (10%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEK-VYSFLGRI 87
           + GC  N+ DS  +   F + GY   +       ++ V+NTC   E A E+ + + L  I
Sbjct: 10  TMGCSKNLVDSETLMKQFEANGYHCTHDAKRPQGEIAVINTCGFIESAKEESINTILEFI 69

Query: 88  RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147
           +  +  R+ +     + V GC++Q   +E+    P V+   G   Y +L      A  GK
Sbjct: 70  QAKEEGRLNK-----LYVMGCLSQRYKDELEAEMPQVDKFYGKFNYKQL-----LADLGK 119

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVT-----AFLTIQEGCDKFCTFCVVPYTRGIE 202
             + +              DG    +R +T     A+L I EGC++ C +C +P   G  
Sbjct: 120 SFIPS-------------CDG----QRHLTTPRHYAYLKISEGCNRQCAYCAIPAMTGKH 162

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR    +++E ++L+  GV E+ ++ Q +  + G  LDG +   ++L+ +++++ G+  
Sbjct: 163 QSRKKEDIINEVKELVAQGVKELQIIAQELTYY-GVDLDGRR-QVAELIEAIADVPGVQW 220

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R   ++P +    L+        +  YL + +Q  SD +L  M R  +  E   +I +I
Sbjct: 221 IRLHYAYPNEFPLELLDVMRRKSNVCKYLDIALQHISDPVLAKMKRNVSKEETLNLIKKI 280

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE-Q 381
           R   P I + +  +VG PGET + F+  +D V +  + +  +F YS   GT  +   E +
Sbjct: 281 REAVPGIHLRTTLMVGHPGETKEAFQELLDFVRETRFERMGAFAYSEEEGTYSACHYEDE 340

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQS---- 437
           +    K  RL  L    +E      +  VG+++  +I++  KE    +GRS +       
Sbjct: 341 ISAEEKQRRLDDLMALQQEISSEIEEEKVGKVLLTVIDR--KEGDYYIGRSEFCSPEVDP 398

Query: 438 --VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
             ++  ++   IG    V+IT+     LYGE+V
Sbjct: 399 EILIPATRRLRIGTFYNVKITNSDAFDLYGEIV 431


>gi|218294853|ref|ZP_03495707.1| MiaB-like tRNA modifying enzyme [Thermus aquaticus Y51MC23]
 gi|218244761|gb|EED11285.1| MiaB-like tRNA modifying enzyme [Thermus aquaticus Y51MC23]
          Length = 435

 Score =  132 bits (332), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 125/450 (27%), Positives = 218/450 (48%), Gaps = 37/450 (8%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVN-SMDDADLIVLNTCHIREKAAEKVYSFL 84
           R   ++ GC++N  ++  +     +   E V      ADL+V+NTC +   A       +
Sbjct: 2   RAAFRTLGCKVNQVETEALLGFLKALEPEVVPVEAGGADLVVINTCAVTTTAEADARKEI 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R R       +   +  +VV GC A+   EE+   +   + VV       LP+++   R
Sbjct: 62  RRAR-------RHNPEAFIVVTGCYAELSPEEV--EALGADAVVPNARKAELPKVILE-R 111

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
           FG   + +D       E     + G    R V AFL +Q+GC   C +C++P  RG E  
Sbjct: 112 FG---LPSDPITTPPNEFWGAGERGLLNSR-VRAFLKVQDGCQAGCAYCIIPRLRGKERH 167

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG--KGLDGEKCTFSDLLYSLSEIKGLVR 262
           R   + + EA  L+  G+ EI L G  + ++RG  +GL G      + LY L       +
Sbjct: 168 RDYREALAEAEALLRVGIKEIVLTGVRLGSYRGHPRGLAG----LVEDLYHLG-----AK 218

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDV-LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           +R ++  P D  + L++        + P+LHL +Q+GSDR+LK M RR+    YR ++ R
Sbjct: 219 VRLSSIEPEDTGEDLLRVIARYAPEVRPHLHLSLQTGSDRLLKLMGRRYDKAYYRALVQR 278

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
              + P  A+++D I G P ET+++ R T+  ++++   +  +F Y+PR  T  ++M  Q
Sbjct: 279 AYELIPGFALTTDVIAGLPTETEEEHRETLAFLEELRPTRVHAFTYTPRPKTRAASM-PQ 337

Query: 382 VDENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSV 438
           V   V+  R   L+ L ++L E+++      +G  +EVL+E+  ++ G L+G +P     
Sbjct: 338 VPIEVRKRRTRELIALAQRLAEERIRPK---LGGEVEVLVER--RQGGFLLGHTPDYYEA 392

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            L  +    G+ + + +  V+  TL G +V
Sbjct: 393 RLEGQALP-GETVLMAVEGVEGYTLLGRVV 421


>gi|308061638|gb|ADO03526.1| hypothetical protein HPCU_01755 [Helicobacter pylori Cuz20]
          Length = 418

 Score =  132 bits (332), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 102/364 (28%), Positives = 175/364 (48%), Gaps = 38/364 (10%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF--FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           ++ + K++GC+ N++D+  M +    FS   E      +AD+I++N+C +   A   V S
Sbjct: 2   KKVYFKTFGCRTNLFDTQVMGENLKDFSATLEE----QEADIIIINSCTVTNGADSAVRS 57

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-E 141
           +  ++  L            V+  GC  + +G+E+  +   +  V G     ++  LL E
Sbjct: 58  YAKKMARLNKE---------VLFTGCGVKTQGKELFEKG-FLKGVFGHDNKEKINALLQE 107

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           + RF       D ++E+K    ++V     + R   AF+ IQEGCD  C +C++P  RG 
Sbjct: 108 KKRFF-----IDDNLENKHLDTTMVSEFVGKTR---AFIKIQEGCDFDCNYCIIPSVRGR 159

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW---RGKGLDGEKCTFSDLLYSLSEIK 258
             S    +++++   L   GV E+ L G NV ++   RG  +       + L+  LS+I 
Sbjct: 160 ARSFEERKILEQVGLLCSKGVQEVVLTGTNVGSYGKDRGSNI-------ARLIKKLSQIA 212

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           GL R+R  +  P  + +       + D L  +LH+ +Q   D +L+ MNRR+     R++
Sbjct: 213 GLKRIRIGSLEPNQI-NDEFLELLEEDFLEKHLHIALQHSHDFMLEKMNRRNRIKSDREL 271

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           ++ I S   + AI +DFIVG PGE+   F      ++ +       F YS R  TP S M
Sbjct: 272 LEIIAS--KNFAIGTDFIVGHPGESGSVFEEAFKNLESLPLTHIHPFIYSKRKDTPSSLM 329

Query: 379 LEQV 382
            + V
Sbjct: 330 TDSV 333


>gi|294496305|ref|YP_003542798.1| MiaB-like tRNA modifying enzyme [Methanohalophilus mahii DSM 5219]
 gi|292667304|gb|ADE37153.1| MiaB-like tRNA modifying enzyme [Methanohalophilus mahii DSM 5219]
          Length = 406

 Score =  132 bits (332), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 114/397 (28%), Positives = 191/397 (48%), Gaps = 36/397 (9%)

Query: 55  RVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGG--DLLVVVAGCVAQA 112
           R+ S  +A +I+ NTC +++   +K+             +IKE G     V+V GC+ Q 
Sbjct: 6   RLVSEREAKVIICNTCTVKDTTEQKILH-----------KIKEWGLQGREVIVTGCMPQV 54

Query: 113 EGEEILRRSPIVNVVVGPQTYYRLPELLERA--RFGKRVVDTDYSVEDKFERLSIVDGGY 170
           + +EIL  +P V+V+ G  +  +L  +L R   R     +      ED  E L  V    
Sbjct: 55  QLDEILENNPEVHVL-GMNSLLKLGVILNRVHERLEGYSLRPMSVFEDSPEGLLNVP--- 110

Query: 171 NRKR--GVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLL 228
            RKR         I +GC+  C++C+V   RG   S     +V +  + +  G  E+ L 
Sbjct: 111 -RKRFSPNIHICQISQGCNNRCSYCIVTLARGPLYSFDADSIVTDIEQAVYEGCSEVWLT 169

Query: 229 GQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD---MSDCLIKAHGDLD 285
            Q+   +   G+D E      LL  ++ I G  R+R    +P     + D L++A+    
Sbjct: 170 SQDNAQY---GMDKE-IHLPALLERITAIPGDFRVRVGMMNPASTLGILDELLRAYSSEK 225

Query: 286 VLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDD 345
           V    LHLP+QS SD+IL+ M R+HT  +   I+++ R+  P+  + +D IVGFPGE ++
Sbjct: 226 VYK-VLHLPIQSASDKILEKMRRKHTMEQANFIVEKFRNAFPESTLFTDIIVGFPGEDEE 284

Query: 346 DFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE--QVDENVKAERLLCLQKKLREQQV 403
           DF  T+D +      +    +Y+PR   P +  L+   +D  +  ER   L +   + ++
Sbjct: 285 DFELTLDWIRTYHPDKVNISRYTPR---PHTEALQFRNIDTRIVVERSGKLHRLCNQIKL 341

Query: 404 SFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440
              +  VG+ +EV I +  K KG L+ R+   + VV+
Sbjct: 342 GKKEDMVGREVEVFISQKAKVKG-LMSRTDSYKPVVI 377


>gi|307720469|ref|YP_003891609.1| 30S ribosomal protein S12P methylthiotransferase [Sulfurimonas
           autotrophica DSM 16294]
 gi|306978562|gb|ADN08597.1| SSU ribosomal protein S12P methylthiotransferase [Sulfurimonas
           autotrophica DSM 16294]
          Length = 441

 Score =  132 bits (332), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 103/421 (24%), Positives = 205/421 (48%), Gaps = 47/421 (11%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           +  +  + S GC  N+ D+  M  M   Q +E  ++ ++AD+I++NTC   + A E+   
Sbjct: 1   MSNKLHIVSLGCTKNLVDTEVM--MGKLQNFELTDNNEEADVIIVNTCGFIDAAKEES-- 56

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-- 140
            L  + +L ++R KE  D ++V+AGC+++   +E++ + P V++  G   Y ++ ELL  
Sbjct: 57  -LNTVLSLHDAR-KE--DSVLVMAGCLSERYQDELMEQIPEVDIFTGVGDYDKIDELLVA 112

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT--AFLTIQEGCDKFCTFCVVPYT 198
           +++RF   V               ++DG      G +  A++ + EGC++ C+FC +P  
Sbjct: 113 KKSRFSDEVF--------------LIDGAERVVTGSSYHAYIKLSEGCNQTCSFCAIPSF 158

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-RGKGLDGEKCTFSDLLYSLSEI 257
           +G   SR L  +  E   L+  G  + + + Q+ +++ R + +   K   S L+  +  I
Sbjct: 159 KGKLHSRDLDSIAKEVEGLVAKGYWDFSFVSQDSSSYLRDQNV---KDGLSLLMQRIELI 215

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
           +G+   R    +P   S  L++  G   +   Y  +P+Q  +D +L+ M R     +  +
Sbjct: 216 EGVKSARILYLYPSTTSMKLLQNIGKSKIFHNYFDMPIQHINDDMLRIMKRGFGKEKTLE 275

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
           +++ ++S+ P+  + + FIVG P ET + F    +  +   + +   F YS    T   +
Sbjct: 276 LLNYMQSL-PNSFVRTSFIVGHPHETQEMFDEMCEFAENFSFDRINVFSYSDEETTSAYD 334

Query: 378 MLEQVDENVKAERLL--------CLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV 429
           M +++ + VKAER          C +K L+++        VG+  +++I+    E   L+
Sbjct: 335 MQDKISDEVKAERAQILGDIAAECTKKSLQKE--------VGKTRQIVIDGESDEHEYLL 386

Query: 430 G 430
            
Sbjct: 387 S 387


>gi|156322244|ref|XP_001618317.1| hypothetical protein NEMVEDRAFT_v1g225281 [Nematostella vectensis]
 gi|156198441|gb|EDO26217.1| predicted protein [Nematostella vectensis]
          Length = 514

 Score =  132 bits (332), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 89/321 (27%), Positives = 164/321 (51%), Gaps = 30/321 (9%)

Query: 167 DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEIT 226
           +G  +      A+    EGC+   +FC++P  RG  +SR + +V+ EA +L+ +GV E+ 
Sbjct: 205 NGKASAHNAPLAYPKFSEGCNHSGSFCIIPSMRGKLVSRPVGEVLSEAERLVKSGVRELL 264

Query: 227 LLGQNVNA-----------WRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSD 275
           ++ Q+ +A           W G+ +   K   +++  +LS +   VRL Y   +P     
Sbjct: 265 VISQDTSAYGVDVKYKTDFWNGQPV---KTRMTEMCEALSSMGVWVRLHYVYPYPHVDEL 321

Query: 276 CLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI--IDRIRSVRPDIAISS 333
             + A G +   +PYL +P Q  S ++LK+M R   A+E + +  I   R + P++ I S
Sbjct: 322 IPLMAAGKI---LPYLDIPFQHASPKVLKAMKR--PAFEDKTLARIKNWREICPELTIRS 376

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA---ER 390
            FIVGFPGET++DF+  ++ + +    +   F+YSP  G   + +   V +++K    +R
Sbjct: 377 TFIVGFPGETEEDFQYLLNWLTEAQLDRVGCFQYSPVEGAHANLLDNPVPDDIKQDRWDR 436

Query: 391 LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPWLQ-SVVLNSKNHNI 447
            +  Q+ +   ++      VG+ ++VLI++   +    +    +P +  SV + S N N 
Sbjct: 437 FMAHQQAISTARLQLK---VGKEMDVLIDEVDDQGAVARCYADAPEIDGSVFIASTNVNP 493

Query: 448 GDIIKVRITDVKISTLYGELV 468
           GD ++VRI D     ++ EL+
Sbjct: 494 GDKVRVRIVDADEYDMWAELI 514



 Score = 40.4 bits (93), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 8/76 (10%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  FV S GC   + DS R+      +GYE V++  DAD++V+NTC   + A  +    
Sbjct: 139 PKVGFV-SLGCPKALVDSERILTQLRMEGYEVVSTYQDADVVVVNTCGFIDSAKAESLEV 197

Query: 84  LGRIRNLKNSRIKEGG 99
           +G         IKE G
Sbjct: 198 IGE-------AIKENG 206


>gi|221106620|ref|XP_002155994.1| PREDICTED: similar to predicted protein [Hydra magnipapillata]
          Length = 421

 Score =  132 bits (332), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 107/371 (28%), Positives = 178/371 (47%), Gaps = 37/371 (9%)

Query: 22  IVP--QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAA 77
           I+P  Q  ++K++GC  N  DS  M  +  + GY +V + D  +ADL +LN+C ++  A 
Sbjct: 65  IIPGTQCIYIKTWGCTHNNSDSEYMAGLLAAYGY-KVTTSDPLNADLWLLNSCTVKNPAE 123

Query: 78  EKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAE--GEEILRRSPIVNVVVGPQTYYR 135
           E   + + + + L            VV+AGCV Q +  GE +   S     +VG Q   R
Sbjct: 124 ESFKNEIKKAQELNK---------YVVLAGCVPQGQPRGEFMKGLS-----IVGVQQIDR 169

Query: 136 LPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYN----RKRGVTAFLTIQEGCDKFCT 191
           + E++E    G  V       + K     I     N    RK  +   + I  GC   CT
Sbjct: 170 VVEVVEETLKGHSV---RLFGKKKLNGKKIGGAPLNLPKIRKNPLIEIIAINTGCLNQCT 226

Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLL 251
           +C   + RG   S    ++V   ++  + GV EI L  ++  A+ GK +     T  +LL
Sbjct: 227 YCKTKHARGELGSYPPEEIVARVKQSFEEGVVEIWLTSEDTGAY-GKDIG---VTLPELL 282

Query: 252 YSLSEI---KGLVRLRYTTS-HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307
           + + E+    GL+R+  T   + ++  D + K      V   +LH+PVQSGS+ +L  M 
Sbjct: 283 WQIIEVIPPGGLMRIGMTNPPYIKEYLDEMAKILNHPRVYS-FLHIPVQSGSNNVLHDMK 341

Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           R +   +++  ++ ++   P + I++D I GFP ET +DF  +  LV +  +   F  ++
Sbjct: 342 REYRIEDFKNTVNFLKDRVPRLTIATDIICGFPTETLEDFADSCALVQEYQFPSLFINQF 401

Query: 368 SPRLGTPGSNM 378
            PR GTP +NM
Sbjct: 402 FPRPGTPAANM 412


>gi|94266362|ref|ZP_01290062.1| MiaB-like tRNA modifying enzyme [delta proteobacterium MLMS-1]
 gi|93453045|gb|EAT03530.1| MiaB-like tRNA modifying enzyme [delta proteobacterium MLMS-1]
          Length = 470

 Score =  132 bits (331), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 106/396 (26%), Positives = 186/396 (46%), Gaps = 14/396 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLR-MEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           +R  V + GC++N Y+S   + ++   +G E V     AD+ V+NTC +  +A  +    
Sbjct: 10  KRVAVTTLGCKVNQYESAAFLSELAEREGVEIVPFEQAADVYVINTCAVTARAGAQSRQL 69

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           + R    + +R+        VV GC AQ   +E+L        +VG     R+ ++    
Sbjct: 70  IRRAARCRRARL--------VVTGCYAQVAPQEVLELVGNPLCIVGNAHKERVAQIAAAG 121

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           R     +      + +     +V     R R V   L +Q+GC + C++C+VP  RG   
Sbjct: 122 RSCDLEMYHGEMGDCRQVAPLLVKAATARSRAV---LKVQDGCSQACSYCIVPRARGRSR 178

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           S    +V+ +A      G  E  L G ++  + G+ L         L   L+    L R 
Sbjct: 179 SVLPERVLRQAEIFAAAGHREAVLTGIHLGHY-GRDLTPPGSLLGLLEQLLARDLPL-RY 236

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R ++    ++   L+        L+P+LH+P+QSG DRIL++MNR +    +  +I+R  
Sbjct: 237 RLSSLEATEIGPDLLALLAAESRLLPHLHIPLQSGDDRILRAMNRPYDRARFAAVIERCA 296

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           +  P+ AI  D + GFPGE +  F+ T +L+  +  +    F YS R GTP + + +QV 
Sbjct: 297 AALPEAAIGIDVMTGFPGEDEPAFQHTYELLAALPISYLHVFPYSQRAGTPAARLPDQVP 356

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419
             V+ +R   L++    ++++F    +G+   VL+E
Sbjct: 357 GPVRDQRAARLRELGESKKIAFYQRFLGRQRRVLVE 392


>gi|256825609|ref|YP_003149569.1| MiaB-like tRNA modifying enzyme YliG [Kytococcus sedentarius DSM
           20547]
 gi|256689002|gb|ACV06804.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Kytococcus
           sedentarius DSM 20547]
          Length = 526

 Score =  132 bits (331), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 89/293 (30%), Positives = 143/293 (48%), Gaps = 15/293 (5%)

Query: 178 AFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG 237
           A L I  GCD+ C+FC +P  RG  +SR  + V+ EA  L +NGV E+ L+ +N  ++ G
Sbjct: 221 APLKIASGCDRRCSFCAIPAFRGAYLSRRPTDVLAEAHWLAENGVKEVFLVSENTTSY-G 279

Query: 238 KGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQS 297
           K L G+      +L  L+ I G+ R+R +   P +M   L++A  +   ++PY  L  Q 
Sbjct: 280 KDL-GDLRLLDTMLPELAAIDGIERVRVSYLQPAEMRPELLRAMVETPGVVPYFDLSFQH 338

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
            S  +L+ M R   A  +  +ID++R+  PD  + S+ I GFPGET+ D     D V + 
Sbjct: 339 ASGPLLRRMRRFGDAEGFLGLIDQVRTASPDAGLRSNVICGFPGETEQDVEVLADFVTRA 398

Query: 358 GYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVL 417
                  F YS   GT G  +  ++ + V  ER+  ++    E         VG  + VL
Sbjct: 399 QLDVLGVFGYSDEDGTEGEKLDGKLPQEVIDERVAHIRDLAEEVMAQRAADRVGDAVSVL 458

Query: 418 IEKH---GKEKGKLVGR----SPWLQSVVL------NSKNHNIGDIIKVRITD 457
           +E H   G+   ++VGR     P +  V +         +  +GDI++  + D
Sbjct: 459 VEAHEDEGEAGTQVVGRPEQQGPEVDGVTILVDAAGAPADVAVGDIVRATVVD 511



 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 58/128 (45%), Gaps = 8/128 (6%)

Query: 13  MVSQIVDQCIVP----QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLN 68
           M S   D+   P    +   + + GC  N  DS  +     + G+E V+  D AD+ V+N
Sbjct: 1   MSSATTDRAAAPDTERRSVHIATLGCTRNEVDSEELAGRLAAAGWELVDEADGADVTVVN 60

Query: 69  TCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVV 128
           TC   ++A +     +    +LK    +EG    VV  GC+A+  G E+    P  + V+
Sbjct: 61  TCGFVDQAKKDSIDAVLDAHDLK----EEGRTGAVVAVGCLAERYGNELAAELPEADAVL 116

Query: 129 GPQTYYRL 136
           G  +Y  +
Sbjct: 117 GFDSYADM 124


>gi|239907919|ref|YP_002954660.1| hypothetical protein DMR_32830 [Desulfovibrio magneticus RS-1]
 gi|239797785|dbj|BAH76774.1| hypothetical protein [Desulfovibrio magneticus RS-1]
          Length = 627

 Score =  132 bits (331), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 109/388 (28%), Positives = 178/388 (45%), Gaps = 30/388 (7%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+RF++ + GC++N Y++  + + F ++G+    S  DAD IVL +C +  +A  +    
Sbjct: 6   PRRFWLATLGCKVNQYEARALAEAFAAKGWSPAPSPADADRIVLISCAVTARAESES--- 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVA-GCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
               R L  + I+E      V A GC A    E            +G      +P+    
Sbjct: 63  ----RRLARALIREAKPGTEVAATGCAAAVHPEAF--------AALG---AVPMPDKDRL 107

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           A     +        D F  L++   GY+R R   A L IQ+GC   CT+C+VP  RG  
Sbjct: 108 AAASDTLAPCPPRPGDHFPNLAVA--GYDRAR---ALLKIQDGCSHGCTYCIVPAARGPS 162

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTF---SDLLYSLSEIKG 259
           +SR    ++ EAR+L+D G  E+ L G N+  + G  L      +   +DL   L    G
Sbjct: 163 VSRPYPAILAEARRLLDAGHAELGLTGINLGHF-GPDLAPPMSFWRLVADLERDLLASHG 221

Query: 260 LV-RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR-HTAYEYRQ 317
              RLR  +  P  +    +   G+   +  +LH+ +QS    +L +MNRR + A     
Sbjct: 222 PAFRLRLGSLDPAMLDAEGLAVLGESRRVCRHLHISLQSADPGVLGAMNRRPNDADAVSF 281

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
            +D++      +A+  D + GFPGE D    AT   + ++  + A  F YS R GTP + 
Sbjct: 282 FVDKLGMKWGRMALGLDLLAGFPGEADTAHAATAAFLTRLPVSYAHVFPYSRRPGTPAAT 341

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSF 405
           M  Q+ + +K  R   L++   ++  +F
Sbjct: 342 MAGQLPKEIKTRRAAELRRTAEDKARAF 369


>gi|289642441|ref|ZP_06474587.1| MiaB-like tRNA modifying enzyme YliG [Frankia symbiont of Datisca
           glomerata]
 gi|289507786|gb|EFD28739.1| MiaB-like tRNA modifying enzyme YliG [Frankia symbiont of Datisca
           glomerata]
          Length = 485

 Score =  132 bits (331), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 112/382 (29%), Positives = 169/382 (44%), Gaps = 33/382 (8%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +R  + + GC  N  DS  +       G+  V+    AD +V+NTC   + A +     L
Sbjct: 7   RRVALITLGCARNDVDSEELAARLGGDGWAVVDDPVTADAVVVNTCGFVDVAKKDSIDTL 66

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
               +L+++    GG   VV  GC+A+  G ++    P  + V+G   Y  L   L+   
Sbjct: 67  LAAADLRDAATDAGGPKAVVAVGCLAERYGRQLADSLPEADAVLGFDAYPTLGSHLDAVL 126

Query: 145 FGKR--------------VVDTDYSVEDKFERLSIVDGG-YNRKR---GVTAFLTIQEGC 186
            G++              +   D   E + ER     G    R+R   G  A L I  GC
Sbjct: 127 RGEKPAAHTPRDRRTLLPITPVDRQAE-RTERAGPASGPPVLRQRLLGGPVASLKISSGC 185

Query: 187 DKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT 246
           D+ C FC +P  RG  +SR    V+ EA  L   GV E+ L+ +N  ++ GK L G+   
Sbjct: 186 DRRCAFCAIPTFRGAHVSRPPQDVLAEAEWLAGQGVRELVLVSENSTSY-GKDL-GDLRA 243

Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306
              LL  L+ I G+VR+R     P ++   L++       + PYL L  Q  S  +L+ M
Sbjct: 244 LEKLLPQLAAIAGVVRVRAVYLQPAEVRPSLLETVLTTPGVAPYLDLSFQHASPSVLRRM 303

Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDD------FRATMDLVDKIGYA 360
            R   A  +  ++ R R++ PD+   S+ IVGFPGET  D      F    DL D +G  
Sbjct: 304 RRFGGADAFLDLLARARALAPDLGARSNVIVGFPGETRADVALLERFLTDADL-DAVGV- 361

Query: 361 QAFSFKYSPRLGTPGSNMLEQV 382
               F YS   GT  + +  +V
Sbjct: 362 ----FGYSDEDGTEAATLPGKV 379


>gi|261260656|gb|ACX55014.1| YmcB [Bacillus amyloliquefaciens]
          Length = 208

 Score =  132 bits (331), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 74/206 (35%), Positives = 114/206 (55%), Gaps = 2/206 (0%)

Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306
             DL+  L +I  + R+R+TTSHPRD  D LI+       L+ ++HLPVQSGS  +LK M
Sbjct: 4   LGDLMDELRKI-DIPRIRFTTSHPRDFDDHLIEVLAKGGNLLDHIHLPVQSGSSAMLKMM 62

Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
            R++    Y +++ +I++  P+ ++++D IVGFP ETD+ F  T+ L  ++ +  A++F 
Sbjct: 63  ARKYDRERYLELVGKIKAAMPNASLTTDIIVGFPNETDEQFEETLSLYREVEFDSAYTFI 122

Query: 367 YSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG 426
           YSPR GTP + M + V   VK ERL  L   ++E          G+ +EVL+E   K   
Sbjct: 123 YSPREGTPAAKMKDNVPMRVKKERLQRLNDLVKEISAKKMKEYEGRTVEVLVEGESKNNP 182

Query: 427 K-LVGRSPWLQSVVLNSKNHNIGDII 451
             L G +   + V        IG I+
Sbjct: 183 DILAGYTEKSKLVNFKGPKDAIGKIV 208


>gi|67462443|ref|XP_647883.1| RNA modification enzymes, MiaB-family [Entamoeba histolytica
           HM-1:IMSS]
 gi|56463504|gb|EAL42497.1| RNA modification enzymes, MiaB-family [Entamoeba histolytica
           HM-1:IMSS]
          Length = 438

 Score =  132 bits (331), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 95/373 (25%), Positives = 179/373 (47%), Gaps = 42/373 (11%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDAD----LIVLNTCHIREKAAEKVYSFLGR 86
           +YGC  NV DS  M+    + GY+  +S          +V+N+C ++  + + +     +
Sbjct: 14  TYGCSHNVSDSEVMQKDLINAGYKIDSSSTPISSKYKAVVINSCTVKNPSQQAIDVVQKK 73

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
                     E  ++ +V+AGCV QA+ +           +VG    +++ E +E+A   
Sbjct: 74  C---------EEANVPLVIAGCVPQADPKACHCSKKCS--IVGVDQLHKITEAVEKA--- 119

Query: 147 KRVVDTDYSVEDKFERLSIVD-GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                T    +   ER ++VD   + R   +   +    GC+  C++C   + RG   S 
Sbjct: 120 -----THNEGQSYLERGALVDIDDHVRSNPLIDIIVTCTGCENACSYCKTKHARGGLRSY 174

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK------- 258
            + ++V   ++ +D GV EI L G+++ A+   GLD    TF  +L  + E+        
Sbjct: 175 PIEELVKRVQQSVDEGVKEIRLTGEDIGAY---GLDIND-TFPHMLERICEVVDGKAMLR 230

Query: 259 -GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
            G+V   Y   +  ++ + L++          +LH+P+QSGS  +L +M R++T  E+  
Sbjct: 231 IGMVNPPYIIKYFNEIVNILLRP-----CCFKFLHIPIQSGSTSVLDAMKRKYTREEFDD 285

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
           + +R+R   P I+I++D I GFP ETD+D + T++ ++K  +      +   R GTP + 
Sbjct: 286 VCNRLRIAVPGISIATDIICGFPTETDEDHKKTLECIEKHKFPVVNISQMYIRPGTPAAK 345

Query: 378 MLEQVDENVKAER 390
           M +Q++  +  +R
Sbjct: 346 M-KQINSKIVKQR 357


>gi|242310194|ref|ZP_04809349.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489]
 gi|239523491|gb|EEQ63357.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489]
          Length = 443

 Score =  132 bits (331), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 95/386 (24%), Positives = 185/386 (47%), Gaps = 29/386 (7%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA-AEKVY 81
           + ++  + S GC  N+ DS  M        YE    + +AD++++NTC   E A  E + 
Sbjct: 1   MSKKLHLISLGCTKNLVDSEVMLGKL--SEYENTQEIKEADVVIVNTCGFIEAAKTESIQ 58

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           + L  + N K + I       +V +GC+++   +E+    P ++++ G   Y ++  ++E
Sbjct: 59  TILEALNNKKENAI-------LVASGCLSERYAKELKEEIPEIDIITGVGDYDKIDLMIE 111

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           + + G++++     V    E    +  G      + A++ + EGC++ C+FC +P  +G 
Sbjct: 112 KRKKGEKILSNANGVFLANENDKRIISGSK----IHAYIKLSEGCNQKCSFCAIPSFKGK 167

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-RGKGL-DGEKCTFSDLLYSLSEIK- 258
             SR+L   + E + L   G  + T + Q+ +++ R  G+ DG      DL+  + ++  
Sbjct: 168 LHSRTLESTLKEVQNLAQKGFSDFTFISQDSSSYLRDLGIKDG----LVDLVKGIDKLAK 223

Query: 259 ---GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
              G+   R    +P   S  LI+   D  +   Y  +P+Q  S ++LK M R     E+
Sbjct: 224 EGIGIKSARILYLYPATTSKKLIQTIIDSPIFHNYFDMPLQHISQKVLKQMGR---GGEF 280

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
           +++++ +R   P+  + + FI+G PGE + DF    + V+K  + +   F YS   GT  
Sbjct: 281 KELLEMMRQA-PNSFVRTSFIIGHPGEEESDFVELCEFVEKFHFDRINFFAYSKEEGTKS 339

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQ 401
           + M EQ+       RL  + +  ++Q
Sbjct: 340 AKM-EQIPNKTINARLKKINQIFQKQ 364


>gi|218682291|ref|ZP_03529892.1| MiaB-like tRNA modifying enzyme [Rhizobium etli CIAT 894]
          Length = 302

 Score =  132 bits (331), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 96/318 (30%), Positives = 150/318 (47%), Gaps = 31/318 (9%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V ++GC++N Y+S  M+      G          + I++NTC +  +A  +         
Sbjct: 6   VITFGCRLNTYESEVMKAQAEKAGLN--------NAILVNTCAVTGEAVRQARQ------ 51

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ------TYYRLPELLER 142
                  ++     ++V GC AQ E +     +  V+ V+G +      +Y  LP+    
Sbjct: 52  -AIRRARRDNPHARIIVTGCAAQTEKQTFAEMAE-VDAVLGNEEKLSSTSYRSLPDFGVS 109

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           A    RV D         + +  +DG       V AF+ +Q GCD  CTFC++PY RG  
Sbjct: 110 AEEKLRVNDIMSVKATAPQMVRHIDGH------VRAFIQVQNGCDHRCTFCIIPYGRGNS 163

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS-LSEIKGLV 261
            S  +  VVD+ARKL D+G CEI L G +  ++ G  L G   T   L  + L +I  + 
Sbjct: 164 RSVPMGAVVDQARKLADSGYCEIVLTGVDATSY-GADLPGTP-TLGLLAKTLLKQIPEIR 221

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           RLR ++    +    L+    D    MP+LHL +Q G D ILK M RRH+  +  + I+ 
Sbjct: 222 RLRLSSIDSIEADAHLMDLIADEPRFMPHLHLSLQHGDDMILKRMKRRHSRADALRFIEE 281

Query: 322 IRSVRPDIAISSDFIVGF 339
            R +RP+++  +D I GF
Sbjct: 282 ARHLRPEMSFGADMIAGF 299


>gi|303327235|ref|ZP_07357677.1| RNA modification enzyme, MiaB-family [Desulfovibrio sp. 3_1_syn3]
 gi|302863223|gb|EFL86155.1| RNA modification enzyme, MiaB-family [Desulfovibrio sp. 3_1_syn3]
          Length = 493

 Score =  131 bits (330), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 106/382 (27%), Positives = 176/382 (46%), Gaps = 42/382 (10%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +FF+ ++GC++N Y+S  + + +   G E  +   +AD++ +N+C I  K      + + 
Sbjct: 27  KFFIATFGCKVNQYESQSLREAWQKLGGEECDVPGEADVLCVNSCAITAKGERDARNAVF 86

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQ-------------AEGEEILRRSPIVNVVVGPQT 132
           R+R       +E     +++ GC A+             AE + ++ +     ++ GP  
Sbjct: 87  RLR-------REAPAARLILTGCAARLFTKFRPRPGAAWAEPDLLVPQEDKSRLLRGPWP 139

Query: 133 YYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTF 192
               P L                    F    I    + R R V   L +Q+GC   CT+
Sbjct: 140 EGNAPGL-------PAAESIRAEAPANFPPFRISS--FRRARPV---LKVQDGCAHRCTY 187

Query: 193 CVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLL 251
           C+VP TRG   SR+  +V+DEAR+L+  G  E+ L G N+   R  G D  +   F DLL
Sbjct: 188 CIVPLTRGRPRSRAPQEVLDEARRLLRAGHAELMLSGVNL---RQYGRDVPDYGGFWDLL 244

Query: 252 YSL-----SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306
             L      E  G  RLR ++  P  +    ++      +L P+LH+ +Q  S  +LK M
Sbjct: 245 RFLDGHLAPEFAGRARLRISSLEPSQLDRRGLETLTACRMLCPHLHISLQHASPAVLKRM 304

Query: 307 NRRH-TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
            R H TA    + +  + +  P + + +D +VGFPGETD+D R  ++LV ++  + A  F
Sbjct: 305 GRGHYTAGMLEEGVAALAAHWPRMGLGADILVGFPGETDEDLRLLLELVQRLPLSYAHVF 364

Query: 366 KYSPRLGTPGSNMLEQVDENVK 387
            YS R GT        + + +K
Sbjct: 365 PYSRRPGTAAEAFAGHLPQALK 386


>gi|291288283|ref|YP_003505099.1| MiaB-like tRNA modifying enzyme YliG [Denitrovibrio acetiphilus DSM
           12809]
 gi|290885443|gb|ADD69143.1| MiaB-like tRNA modifying enzyme YliG [Denitrovibrio acetiphilus DSM
           12809]
          Length = 435

 Score =  131 bits (330), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 104/367 (28%), Positives = 168/367 (45%), Gaps = 25/367 (6%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA-AEKVYSFLGRIRN 89
           S GC  N  D   +       G++  N  +++D I++NTC   E A AE + + L     
Sbjct: 10  SLGCSKNQVDLEYLMGAIEKAGFQITNIPEESDAIIVNTCGFIEPAVAEAIDNILEM--- 66

Query: 90  LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149
               R K G  L  +V GC+++   +E+    P V+   G     ++   L         
Sbjct: 67  --GERRKAGAKL--IVTGCMSERYSDEMKTEFPEVDYFTGVGDLQKVVGYL--------- 113

Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209
           ++ D +V D  +   + +  Y       A+L + EGCD  C++C +P  RG  +SR +  
Sbjct: 114 LEDDSAVPDYGDARILANEHY------FAYLKVSEGCDNRCSYCAIPGIRGGLVSRKMED 167

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSH 269
           +V EA  L+D GV E+ ++ Q+ N   GK + G K +  +LL  L  I+G  ++R    +
Sbjct: 168 IVKEAESLVDGGVKELIVISQD-NTKYGKDIYG-KPSMPELLKKLEGIEGDFKIRIMYLN 225

Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329
           P  ++  LI        ++ Y  +PVQ  SD++LK+M R+  +     + D IR   P+ 
Sbjct: 226 PDGVTQELIDVICGSKKILSYFDIPVQHYSDKMLKAMKRKSDSSIIDDVYDSIRKADPES 285

Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAE 389
            I +  IVGFPGET+ DF      + +     A  F Y    GT    +   V +     
Sbjct: 286 FIRTTMIVGFPGETEGDFAELEKFLTRHKPDFAGFFPYYREKGTSAYELGASVGKRETNR 345

Query: 390 RLLCLQK 396
           R+  LQK
Sbjct: 346 RIRALQK 352


>gi|255261196|ref|ZP_05340538.1| conserved hypothetical protein [Thalassiobium sp. R2A62]
 gi|255103531|gb|EET46205.1| conserved hypothetical protein [Thalassiobium sp. R2A62]
          Length = 464

 Score =  131 bits (329), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 119/461 (25%), Positives = 207/461 (44%), Gaps = 53/461 (11%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC   + DS R+     ++GY        A+ +++NTC   + A  +    +G     
Sbjct: 33  SLGCPKALVDSERILTRLRAEGYAISPDYSGAEAVIVNTCGFLDSAKAESLDAIGEALT- 91

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
           +N +        V+V GC+  AE + I    P +  V GPQ Y             ++V+
Sbjct: 92  QNGK--------VIVTGCLG-AEPDYIREHHPKILAVTGPQQY-------------EQVL 129

Query: 151 DTDYSV----EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           D  +S      D F  L    G     R  + +L I EGC+  C FC++P  RG   SR 
Sbjct: 130 DAVHSCVPPDPDPFIDLLPATGVSLTPRHYS-YLKISEGCNHKCKFCIIPDMRGRLASRP 188

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE-----------KCTFSDLLYSLS 255
           +  V+ EA KL++NGV E+ ++ Q+ +A+   GLD +           +   +DL   L 
Sbjct: 189 VHAVLREAEKLVENGVNELLVISQDTSAY---GLDRKYDVHPWKDREVRSHITDLTRELG 245

Query: 256 EIKGLVRLRYTTSHP--RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
           ++   VRL Y   +P  RD+   +       + ++PYL +P Q     +L+ M R   A 
Sbjct: 246 QLGAWVRLHYVYPYPHVRDLIPLMADPE---NGVLPYLDIPFQHAHPDVLRRMARPAAAA 302

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
                I   R+  P+I + S FIVG+PGET+ +F+  +D +D+    +   F+Y    G 
Sbjct: 303 RTLDEIAAWRAECPNITLRSTFIVGYPGETEAEFQHLLDWMDEAQLDRVGCFQYENVDGA 362

Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQII---EVLIEKHGKEKGKLVG 430
             +++ + V   VK +R     +K +    +  +A VG ++      I++ G    + + 
Sbjct: 363 RSNDLPDHVAPEVKQDRWDRFMEKAQAISEAKLEAKVGSVMDVIVDDIDEDGVATCRTMA 422

Query: 431 RSPWLQSVVL---NSKNHNIGDIIKVRITDVKISTLYGELV 468
            +P +   +     +   ++G+I+ V + +     L+G LV
Sbjct: 423 DAPEIDGNLFIDEGTSGLSVGEIVSVEVDEAGEYDLWGALV 463


>gi|159475142|ref|XP_001695682.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158275693|gb|EDP01469.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 435

 Score =  131 bits (329), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 117/455 (25%), Positives = 203/455 (44%), Gaps = 37/455 (8%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSM--DDADLIVLNTCHIREKAAEKVYS 82
           Q  +VK++GC  N+ DS  M       GY  V     D ADL ++N+C ++  +   + +
Sbjct: 7   QAVWVKTFGCSHNISDSEYMAGQLSDYGYRLVEDAERDAADLWLINSCTVKGPSQAGMSN 66

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +            + G   VVVAGCV Q  G++ L     V+V+ G     R+ E +E 
Sbjct: 67  LIA---------AGKAGGKRVVVAGCVPQ--GDKKLPELQGVSVL-GVTQIDRVVEAVEE 114

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
              G  V       +    RL +     N+       + I  GC   CT+C   + RG  
Sbjct: 115 TLRGNTV---SMLAKKALPRLDLPKVRRNKH---IEIVPISTGCLGACTYCKTKHARGHL 168

Query: 203 ISRSLSQVVDEARKLI-DNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
            S   + + +  R+   D  V EI L  ++  A+ G+ +        D L ++    G  
Sbjct: 169 GSYDPAALAERVRQAAADPWVREIWLSSEDTGAY-GRDIGSSLPELLDKLIAVLPPDGRT 227

Query: 262 RLRYTTSHPR---DMSDCLIKA--HGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
            LR   ++P    +  + L KA  H     +  YLH+PVQS SD +L++M R +T  E+R
Sbjct: 228 LLRVGMTNPPYVLEHLEALCKALRH---PCVFSYLHVPVQSASDAVLEAMKREYTVAEFR 284

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
           ++ID + +  P + +++D I  FPGE+ +D  AT++L+    +      ++ PR GTP +
Sbjct: 285 RVIDTLLAGVPGMELATDIITAFPGESPEDHAATLELLRTYRFPHTHISQFYPRPGTPAA 344

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDA---CVGQIIEVLIEKHGKEKGKLVGRSP 433
            M  ++   V  +R     ++L  +  S+ D     VG +   ++     +   LV  + 
Sbjct: 345 RMKNKIPTQVSKQR----SRELAAEVDSWADVYQHLVGTVQRAVVVDTAADGVSLVAHTR 400

Query: 434 WLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
               V+L  +   +G +++V I      ++ G +V
Sbjct: 401 SYTQVLLEPQPGLMGAVVEVAIDSASRWSVRGRVV 435


>gi|298373642|ref|ZP_06983631.1| 2-methylthioadenine synthetase [Bacteroidetes oral taxon 274 str.
           F0058]
 gi|298274694|gb|EFI16246.1| 2-methylthioadenine synthetase [Bacteroidetes oral taxon 274 str.
           F0058]
          Length = 431

 Score =  131 bits (329), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 123/453 (27%), Positives = 217/453 (47%), Gaps = 42/453 (9%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDD--ADLIVLNTC-HIREKAAEKVYSFLG 85
           V + GC  N+ DS R+   F   G+   +       +++V+NTC  I     E + + L 
Sbjct: 8   VITLGCSKNLVDSERLMRQFAYNGFLTRHEPRSVGGEIVVVNTCGFIGSAKEESINTILS 67

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            I   K  +I +     ++V GC+++   ++++R  P V+   G   + ++         
Sbjct: 68  LIEAKKKRKIGK-----LIVMGCLSERYRDDLIRELPEVDRFYGKFDWKQI--------- 113

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
              + D   S     E   ++    +      A++ I EGC++ C++C +P   G   SR
Sbjct: 114 ---ISDIGCSYNKLLENERLITTPSH-----LAYVKIAEGCNRKCSYCAIPIITGRHRSR 165

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           S+  +  E R L+  GV E  L+ Q++  + G+ L   K + + L+  L++I G+  LR 
Sbjct: 166 SIEDIEHEIRSLVRGGVKEFNLIAQDLTYY-GRDL-YRKPSIARLVDRLAKIDGVEWLRL 223

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
             ++P      L  A  D   +  YL + +Q  SD +L+ M R  T  E   +I  IR  
Sbjct: 224 HYAYPAHFPKDLPAAIADHPNVCNYLDMALQHISDNMLRKMRRNITKAETIDLIADIRRQ 283

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT-PGSNMLEQVDE 384
            PDI + +  ++G P E ++DF    + V+ + + +  +F YS   GT    +  +++  
Sbjct: 284 VPDIHLRTTLLLGHPHEEEEDFEELKEFVETMRFERLGAFAYSHEEGTFADRHYRDEIPF 343

Query: 385 NVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQS 437
           +VK  RL   + +Q+ + EQ   +N   VGQ++ VLI+K  KE+   VGR    SP +  
Sbjct: 344 DVKNRRLSEIMDIQEHIAEQ---YNARKVGQVLRVLIDK--KEEPYYVGRTEYDSPEVDG 398

Query: 438 VVLNSKNHN--IGDIIKVRITDVKISTLYGELV 468
            VL + +H   +G+   V+ITD +   L+GE+V
Sbjct: 399 EVLIADSHKLRVGNFYDVKITDSQAFDLFGEVV 431


>gi|167379627|ref|XP_001735214.1| radical sam proteins [Entamoeba dispar SAW760]
 gi|165902883|gb|EDR28592.1| radical sam proteins, putative [Entamoeba dispar SAW760]
          Length = 438

 Score =  131 bits (329), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 96/376 (25%), Positives = 184/376 (48%), Gaps = 48/376 (12%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDA-----DLIVLNTCHIREKAAEKVYSFLG 85
           +YGC  NV DS  M+    + GY +++S +         +V+N+C ++  + + +     
Sbjct: 14  TYGCSHNVSDSEVMQKDLINAGY-KIDSSETPISSKYKAVVINSCTVKNPSQQAIEVVQK 72

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGE--EILRRSPIVNVVVGPQTYYRLPELLERA 143
           +          E  ++ +V+AGCV QA+ +  +  ++  IV    G    +++ E +E+A
Sbjct: 73  KC---------EEANVPLVIAGCVPQADPKACQCSKKCSIV----GVDQLHKITEAVEKA 119

Query: 144 RFGKRVVDTDYSVEDKFERLSIVD-GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
                   T    +   ER ++V+   + R   +   +    GC+  C++C   + RG  
Sbjct: 120 --------THNEGQSYLERGALVNIDEHVRSNPLIDVIVTCTGCENACSYCKTKHARGGL 171

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK---- 258
            S  +  +V   +  ID GV EI L G+++ A+   GLD  + TF  +L  + E+     
Sbjct: 172 RSYPIEDLVKRVQHSIDEGVKEIRLTGEDIGAY---GLDINE-TFPHMLECICEVVEGKA 227

Query: 259 ----GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
               G+V   Y   + +++ + L++          +LH+P+QSGS  +L++M R++T  E
Sbjct: 228 MLRIGMVNPPYIIKYFKEIVNILLRP-----CCFKFLHIPIQSGSSSVLEAMKRKYTREE 282

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
           +  + +R+R   P I+I++D I GFP ETD+D + T++ + K  +      +   R GTP
Sbjct: 283 FDDVCNRLRISVPGISIATDIICGFPTETDEDHKKTLECIQKHQFPIVNISQMYIRPGTP 342

Query: 375 GSNMLEQVDENVKAER 390
            + M +Q++  +  +R
Sbjct: 343 AAKM-KQINSKIVKQR 357


>gi|285808445|gb|ADC35971.1| conserved hypothetical protein [uncultured bacterium 98]
          Length = 328

 Score =  131 bits (329), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 80/244 (32%), Positives = 131/244 (53%), Gaps = 3/244 (1%)

Query: 175 GVTAF-LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVN 233
           G TA  L +Q GC++ C++C++P TRG   S  L  V++  R+    G  EI + G ++ 
Sbjct: 28  GRTALTLRVQTGCEEHCSYCIIPSTRGRGRSHPLPVVLENIRRGTAAGYKEIAITGVHLG 87

Query: 234 AWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHL 293
           ++ G+ L G+  T   L+ +L+E    V  R ++  P D +  +++       L P+ HL
Sbjct: 88  SY-GRDL-GDGTTLDALVRALAEWPEDVLFRISSLEPMDCTREVVRLIAGSGRLAPHFHL 145

Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
           P+Q GSD +L +M R +TA  Y  +++ I++  PD +I +D IVGFPGETDD F  T+  
Sbjct: 146 PLQHGSDAMLSAMGRPYTAAYYSDLLEVIQARLPDASIGTDIIVGFPGETDDHFARTLVA 205

Query: 354 VDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQI 413
           V+++ ++    F YS R GT  +++  +VD  V   R   ++        SF  A +G  
Sbjct: 206 VERLPFSHVHVFPYSDRPGTAAASLPGKVDGTVVRARARAVRDAGSRLARSFQSAQIGTT 265

Query: 414 IEVL 417
              L
Sbjct: 266 RRAL 269


>gi|269793254|ref|YP_003318158.1| MiaB-like tRNA modifying enzyme YliG [Thermanaerovibrio
           acidaminovorans DSM 6589]
 gi|269100889|gb|ACZ19876.1| MiaB-like tRNA modifying enzyme YliG [Thermanaerovibrio
           acidaminovorans DSM 6589]
          Length = 427

 Score =  130 bits (328), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 115/408 (28%), Positives = 181/408 (44%), Gaps = 30/408 (7%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ +V S GC  N  D  R   +   +GY +V+    ADL ++NTC     A ++    +
Sbjct: 3   KKVYVLSLGCAKNRVDGERFLGVALERGYVQVHEPQGADLCIINTCGFLMSAVKENLDAI 62

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
                L+   +   G L VV  GC+     EE LRR   V+ +   + Y  L E L  A 
Sbjct: 63  LEAEELRRRGLI--GSLAVV--GCLVNRYEEE-LRRELQVDFLGRTECYRELGEFLGGAS 117

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G R                   GG      V  +L + EGC   C +C +P  RG   S
Sbjct: 118 EGPRRPL----------------GGSE----VVRYLKVAEGCSNRCAYCAIPLIRGDLRS 157

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
             ++ +V EA  L++ G  EI L+ Q++  + G+ L  +     D + +     G++RL 
Sbjct: 158 LPVAHLVREAELLLEQGAREICLVAQDLTRY-GEDLGTDLMELLDQMEATVRGHGVLRLL 216

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           Y   HP  ++  L++     DV+  YL +PVQ  SDR+L SM R     +  +     R 
Sbjct: 217 YL--HPTRVTRELVERVASSDVVASYLDVPVQHASDRVLASMGRAMGYEDAVRPFLEARQ 274

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           V P  A+ +  +VG+PGE  +DF A +  +++    +  +F +SP  GT    +  +V  
Sbjct: 275 VDPLFAMRTTLMVGYPGEGREDFDALIRFLEEARPDRVGAFVFSPEEGTQAFQLPRRVSG 334

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS 432
                RL  L  +  E  +       G+ + VL+E    E G+ VGRS
Sbjct: 335 RTARSRLDRLMARAAEVSLDRQRLMEGREVRVLLE--AVEDGQWVGRS 380


>gi|313226156|emb|CBY21299.1| unnamed protein product [Oikopleura dioica]
          Length = 1581

 Score =  130 bits (328), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 106/406 (26%), Positives = 182/406 (44%), Gaps = 90/406 (22%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDA-----DLIVLNTCHIREKAAEK 79
           Q+ +V+++GC  N  DS  M       GY+    +DDA     DL +LN+C ++  A + 
Sbjct: 51  QKIYVRTWGCTHNTSDSEYMAGQLAEAGYDV--KLDDAKRLECDLWLLNSCTVKAPAEDH 108

Query: 80  VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVV-----VGPQTYY 134
             + +   + +         ++ VVVAGCV Q         +P    V     +G Q   
Sbjct: 109 FKNAINAAQKV---------NIPVVVAGCVPQG--------APSDKFVKGLSTIGVQQID 151

Query: 135 RLPELLE-------------RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLT 181
           R+ E++E             + R GKR+   D  +  K  R ++++            ++
Sbjct: 152 RVVEVVEETLKGNTVKLLGPKKRAGKRIGGADLGL-PKVRRNALIE-----------IIS 199

Query: 182 IQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-RGKGL 240
           I  GC   CT+C   + RG   S  + ++V    +  + G+ E+ L  ++  A+ R  G 
Sbjct: 200 INTGCLNSCTYCKTKHARGDLASYPIDEIVARFEQAFEQGIVEVWLTSEDTGAYGRDIGT 259

Query: 241 D------------GEKCTF----SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL 284
           +             E C      ++  Y L  ++G+ ++    +HPR             
Sbjct: 260 NIVELLNAVVKTIPEGCMMRIGMTNPPYILEHLEGIAKI---LNHPR------------- 303

Query: 285 DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETD 344
             +  +LH+PVQSGSD +L SM R +   ++ +++D +R+  PD  I++D I GFP ET+
Sbjct: 304 --VYSFLHVPVQSGSDAVLNSMRREYNREDFCKVVDTLRANVPDCNIATDIIAGFPTETE 361

Query: 345 DDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER 390
           +DF  T+ L +K  +   F  ++ PR GTP +   EQ+   V  ER
Sbjct: 362 EDFDETISLCEKYKFPSLFMNQFFPRPGTPAAKW-EQIPRQVIKER 406


>gi|254166896|ref|ZP_04873750.1| MiaB-like tRNA modifying enzyme, archaeal-type [Aciduliprofundum
           boonei T469]
 gi|197624506|gb|EDY37067.1| MiaB-like tRNA modifying enzyme, archaeal-type [Aciduliprofundum
           boonei T469]
          Length = 386

 Score =  130 bits (328), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 117/425 (27%), Positives = 201/425 (47%), Gaps = 60/425 (14%)

Query: 54  ERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAE 113
           E V+  ++AD+I++ TC + E    ++   L RI  LK    K      +VV GC+  A 
Sbjct: 8   EIVSRPEEADVILIGTCVVIEHTENRM---LRRIEELKRYGKK------IVVYGCLPSA- 57

Query: 114 GEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRK 173
                 R  ++++ V P   +              +++ D S  D+   + I D      
Sbjct: 58  ------RKELLDIDVVPIATWEF-------EMAGEILNLDRSPMDE---VFIWDA----- 96

Query: 174 RGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVN 233
               A + I  GC   CT+C+    RG   SRS   ++   +K ++    EI +  Q+  
Sbjct: 97  ---VATIPIANGCLGQCTYCITRLARGRVKSRSKEWILRLVKKALEQRAVEIRISAQDTA 153

Query: 234 AWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD---MSDCLIKAHGDLDVLMPY 290
           A+ G+ +  E    ++L+ S++ I G   LR     PR+   +   LI A+ +  V   +
Sbjct: 154 AY-GRDIGTE---LAELINSITAIPGKFYLRVGMMEPRETLRILPELIDAYSNPKVYK-F 208

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
           LHLPVQSG + IL  MNR +   ++ +I+   R   P++ +S+D IVGFPGE D+ F  T
Sbjct: 209 LHLPVQSGDNEILHRMNRGYKVEDFIKIVRNFRQRFPEMTLSTDIIVGFPGENDESFENT 268

Query: 351 MDLVDKIGYAQAFSFKYSPRLGTPG-------SNMLEQVDENVKAERLLCLQKKLREQQV 403
           M L+ +I        ++SPR  TP        +N +++  + + A  +  + K+      
Sbjct: 269 MKLIKEIKPEILNITRFSPRPKTPAYKWKRPSTNKVKEWSQKLAALHMENMHKRF----- 323

Query: 404 SFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTL 463
              ++ +G+  +V++   GK +GK + RS   + VVL+  N  IG    +RIT  + S L
Sbjct: 324 ---ESMLGKEFKVIVPSRGK-RGKYLARSQNYEPVVLD--NAVIGREYIIRITHYEKSHL 377

Query: 464 YGELV 468
            G+++
Sbjct: 378 VGKIL 382


>gi|224436917|ref|ZP_03657898.1| hypothetical protein HcinC1_03045 [Helicobacter cinaedi CCUG 18818]
 gi|313143389|ref|ZP_07805582.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818]
 gi|313128420|gb|EFR46037.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818]
          Length = 447

 Score =  130 bits (328), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 94/391 (24%), Positives = 199/391 (50%), Gaps = 24/391 (6%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ DS  M      + Y+    +  AD+I++NTC   E A ++    +     L
Sbjct: 12  SLGCTKNLVDSEVMLGKL--KSYQLTPEITKADIIIVNTCGFIESAKQESIQTI-----L 64

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF--GKR 148
           + S +++ G +LVV +GC+++   +E+ +  P ++++ G   Y ++  +++  +    +R
Sbjct: 65  EASALRKIGAVLVV-SGCLSERYAKELKKEIPEIDIITGVGDYDKIDVMVKELKSLQSQR 123

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           V    +   +  ER+ I+   ++      A++ + EGC++ C+FC +P  +G   SR+L 
Sbjct: 124 V----FLATESNERV-IIGSSFH------AYIKLSEGCNQSCSFCAIPSFKGKLHSRTLD 172

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
             + E + L + G  + + + Q+ +++  + L G+K    +L+ ++  ++  +  R    
Sbjct: 173 STIKELQSLYERGFRDFSFIAQDSSSYL-RDL-GQKDGLIELIKAIDNLQLPISCRILYL 230

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
           +P   +  LI+   +    +PY  +P+Q  +D +LK M R     ++ ++++ +R + P 
Sbjct: 231 YPTTTTLELIETIANSTCFLPYFDMPIQHIADSMLKLMRRGANRAKHIELLESMRKI-PK 289

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
             I + F++G PGE + +FR   D V+   + +   F YSP++GT   +M + V      
Sbjct: 290 SFIRTSFVIGHPGEGEKEFRELHDFVEGFNFDRINLFAYSPQVGTFAYDMPQSVSVKTTN 349

Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419
           ER+  L + ++ Q  + + A +GQ +  + E
Sbjct: 350 ERINKLNRIVKSQFKAHSKALLGQEVIAICE 380


>gi|195952540|ref|YP_002120830.1| MiaB-like tRNA modifying enzyme YliG [Hydrogenobaculum sp. Y04AAS1]
 gi|238066317|sp|B4U6U1|RIMO_HYDS0 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|195932152|gb|ACG56852.1| MiaB-like tRNA modifying enzyme YliG [Hydrogenobaculum sp. Y04AAS1]
          Length = 401

 Score =  130 bits (328), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 117/433 (27%), Positives = 200/433 (46%), Gaps = 69/433 (15%)

Query: 33  GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA-EKVYSFLGRIRNLK 91
           GC  N+ DS  +   F     E ++S   AD +V+NTC   E+A  E +   L  I    
Sbjct: 9   GCPKNLVDSENIMGFF---KKENISSYHRADTVVINTCGFIEQAKRESIEEILKAI---- 61

Query: 92  NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVD 151
                 G    V V GC+     EE+ +  P                    A F + + D
Sbjct: 62  ------GDGKKVFVTGCLVYRYKEELQKEIP-------------------EAVFFENIKD 96

Query: 152 TDYSVEDKFERLSIVDGGYNRKRGVT----AFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
                      L  ++     KR +T    A+L I EGC++ C+FC +P  RG   S+S+
Sbjct: 97  -----------LEGIELLQTPKRQLTTKHYAYLKIAEGCNRKCSFCAIPNIRGHHRSKSI 145

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL----VRL 263
            ++V+EA  L + GV E+ ++ Q+   ++      E  +F  ++  L  ++ L    +RL
Sbjct: 146 EELVEEAIYLKEKGVKELIIVSQDTLYYQ------EDNSFKSIIKLLDALEKLDFPWIRL 199

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
            Y   +P  +S   I    +   ++PY  +P+Q  SD ILKSM R +T  +  +++++I 
Sbjct: 200 MYL--YPNSISKDFIDYIDNSKSVLPYFDIPLQHISDNILKSMRRGYTKKDVFRLLEQIN 257

Query: 324 SVRPDIAI-SSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           +++    I  S FIVG+P E + DF   +D + +  +     F+YS   GT      +++
Sbjct: 258 AMKHKKPILRSSFIVGYPTEEERDFEELLDFISQELFHFVGVFEYSHEEGTYAYQFDDKI 317

Query: 383 DENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV 439
            +  K  R   +  L +++ E++   N A VGQ I++LIEK  K++ +   ++P +  +V
Sbjct: 318 PKEEKQRRYKEVFNLSQEILEEK---NSALVGQEIDILIEK--KDRARAFFQAPEIDGIV 372

Query: 440 LNSKNHNIGDIIK 452
              K+     IIK
Sbjct: 373 FLEKSSPKTGIIK 385


>gi|223944159|gb|ACN26163.1| unknown [Zea mays]
          Length = 517

 Score =  130 bits (328), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 103/373 (27%), Positives = 179/373 (47%), Gaps = 25/373 (6%)

Query: 103 VVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFER 162
           +VVAGCV Q  G + L+    ++++ G Q   R+ E++E    G  V           + 
Sbjct: 15  LVVAGCVPQ--GSQGLKELEGISII-GVQQIDRVVEVVEETLKGHEVRLLSR------KT 65

Query: 163 LSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGV 222
           L  +D    RK      L I  GC   CT+C   + RG   S ++  +VD  + ++  GV
Sbjct: 66  LPSLDLPKVRKNKFIEILPINVGCLGACTYCKTKHARGHLGSYTIDSLVDRVKTVVSEGV 125

Query: 223 CEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHG 282
            EI L  ++  A+ G+ +        + + +   +     LR   ++P  + + L +   
Sbjct: 126 REIWLSSEDTGAY-GRDIGTNLPNLLNAIVAELPVDQSTMLRIGMTNPPFILEHLKEIAA 184

Query: 283 DL--DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFP 340
            L    +  +LH+PVQSGSD +LK+MNR +T  E+R+++D +  + P + I++D I GFP
Sbjct: 185 VLCHPCVYSFLHVPVQSGSDSVLKAMNREYTVGEFRKVVDTLCELVPGMQIATDIICGFP 244

Query: 341 GETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLRE 400
           GETD+DF  T++LV +  + Q    ++ PR GTP + M +     VK        K+ RE
Sbjct: 245 GETDEDFSETVNLVKEYQFPQVHISQFYPRPGTPAARMKKVPSNEVK--------KRSRE 296

Query: 401 QQVSFND-----ACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRI 455
               F          G++ ++ I +   +   LVG +     V++ + +  +G     +I
Sbjct: 297 LTSVFESFSPYQGMEGKVEKIWITEIASDGVHLVGHTKGYIQVLVTAPDSMLGTSADAKI 356

Query: 456 TDVKISTLYGELV 468
           T V   +++G +V
Sbjct: 357 TSVGRWSVFGVVV 369


>gi|313220891|emb|CBY31727.1| unnamed protein product [Oikopleura dioica]
          Length = 1590

 Score =  130 bits (328), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 106/406 (26%), Positives = 181/406 (44%), Gaps = 90/406 (22%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDA-----DLIVLNTCHIREKAAEK 79
           Q+ +V+++GC  N  DS  M       GY+    +DDA     DL +LN+C ++  A + 
Sbjct: 51  QKIYVRTWGCTHNTSDSEYMAGQLAEAGYDV--KLDDAKRLECDLWLLNSCTVKAPAEDH 108

Query: 80  VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVV-----VGPQTYY 134
             + +     +         ++ VVVAGCV Q         +P    V     +G Q   
Sbjct: 109 FKNAINAAHKV---------NIPVVVAGCVPQG--------APSDKFVKGLSTIGVQQID 151

Query: 135 RLPELLE-------------RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLT 181
           R+ E++E             + R GKR+   D  +  K  R ++++            ++
Sbjct: 152 RVVEVVEETLKGNTVKLLGPKKRAGKRIGGADLGL-PKVRRNALIE-----------IIS 199

Query: 182 IQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-RGKGL 240
           I  GC   CT+C   + RG   S  + ++V    +  + G+ E+ L  ++  A+ R  G 
Sbjct: 200 INTGCLNSCTYCKTKHARGDLASYPIDEIVARFEQAFEQGIVEVWLTSEDTGAYGRDIGT 259

Query: 241 D------------GEKCTF----SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL 284
           +             E C      ++  Y L  ++G+ ++    +HPR             
Sbjct: 260 NIVELLNAVVKTIPEGCMMRIGMTNPPYILEHLEGIAKI---LNHPR------------- 303

Query: 285 DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETD 344
             +  +LH+PVQSGSD +L SM R +   ++ +++D +R+  PD  I++D I GFP ET+
Sbjct: 304 --VYSFLHVPVQSGSDAVLNSMRREYNREDFCKVVDTLRANVPDCNIATDIIAGFPTETE 361

Query: 345 DDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER 390
           +DF  T+ L +K  +   F  ++ PR GTP +   EQ+   V  ER
Sbjct: 362 EDFDETISLCEKYKFPSLFMNQFFPRPGTPAAKW-EQIPRQVIKER 406


>gi|313681436|ref|YP_004059174.1| SSU ribosomal protein s12p methylthiotransferase [Sulfuricurvum
           kujiense DSM 16994]
 gi|313154296|gb|ADR32974.1| SSU ribosomal protein S12P methylthiotransferase [Sulfuricurvum
           kujiense DSM 16994]
          Length = 438

 Score =  130 bits (328), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 107/408 (26%), Positives = 191/408 (46%), Gaps = 33/408 (8%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + ++  + S GC  N+ D+  M      + +E  ++  +AD+I++NTC   + A ++   
Sbjct: 1   MSKKLHIVSLGCTKNLVDTEVMLGRL--KDFEMTDASGEADVIIVNTCGFIDAAKQES-- 56

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-- 140
            L  I NL   R K   D ++V+AGC+++   EE+ +    V++  G   Y ++ ELL  
Sbjct: 57  -LNTIFNLDAGRKK---DSVLVMAGCLSERYKEELSKELSEVDIFTGVGDYDKIDELLAA 112

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT--AFLTIQEGCDKFCTFCVVPYT 198
           +++RF   V               ++DG      G T  A++ + EGC++ C+FC +P  
Sbjct: 113 KQSRFTPEVY--------------LIDGAERVVTGSTYHAYIKLSEGCNQQCSFCAIPSF 158

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-RGKGL-DGEKCTFSDLLYSLSE 256
           +G   SR+L  +  E   L+  G  + + + Q+ +++ R + + DG       L+  +  
Sbjct: 159 KGKLNSRNLESIAHEVETLVAKGYYDFSFVSQDSSSYLRDQNIQDG----LIHLIKRIEL 214

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           I G+   R    +P   S  LIKA GD  V   Y  +P+Q  +D +LK M R     +  
Sbjct: 215 IDGVKSARILYLYPSTTSLKLIKAIGDSKVFHNYFDMPIQHINDEMLKIMKRGFGKAKTL 274

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
           +++  ++++ P+  I + FIVG P ET+  F    +     G+ +   F YS   GT   
Sbjct: 275 ELLGAMKAL-PNAFIRTSFIVGHPQETEAMFEEMAEFSATFGFDRLNVFSYSDEEGTSAY 333

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE 424
            M E++       R   L K   + ++S     VG  I ++I+    E
Sbjct: 334 TMEEKIPSKTINARAKKLGKIASDVELSSLQKLVGTEITLVIDGESDE 381


>gi|325279490|ref|YP_004252032.1| Ribosomal protein S12 methylthiotransferase rimO [Odoribacter
           splanchnicus DSM 20712]
 gi|324311299|gb|ADY31852.1| Ribosomal protein S12 methylthiotransferase rimO [Odoribacter
           splanchnicus DSM 20712]
          Length = 456

 Score =  130 bits (327), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 116/450 (25%), Positives = 214/450 (47%), Gaps = 42/450 (9%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTC-HIREKAAEKVYSFLGRI 87
           S GC  N+ D+  +       GY+    ++  DA+++++NTC  I +   E V + L ++
Sbjct: 32  SLGCSKNLVDTEMLLKQLDQAGYDTETDVENSDAEVVIVNTCGFIGDAKEESVNTILEQV 91

Query: 88  RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER--ARF 145
                 R KEG    V V GC++Q  G E+    P V+   G    +    +LER    F
Sbjct: 92  -----ERKKEGIVEQVYVIGCLSQRYGAELQEEIPEVDAFFGK---FDWKGVLERMGEHF 143

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            +R+         + +R+      Y       A+L I EGC++ C++C +P   G   SR
Sbjct: 144 DERI---------RNQRVLTTPDHY-------AYLKISEGCNRTCSYCAIPIMTGKHKSR 187

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
              ++++E R L+  GV EI ++ Q++  + G  L G K   ++L+  +++I+GL  ++ 
Sbjct: 188 DFEELLEECRALVKGGVKEILVVAQDLTYY-GIDLYG-KNRLAELIGRIADIEGLEWIKL 245

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
             ++P      L+    +   +  YL + +Q  SD +L+ M R  +  +  ++I +IR  
Sbjct: 246 HYAYPAGFPLELLTVMRERPNVCKYLDIALQHCSDHMLQQMRRGISKKQTIELIRKIRQE 305

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP-GSNMLEQVDE 384
            P I I +  + G PGET +DF    + V ++ + +   F YS    T    +  + V E
Sbjct: 306 VPGIFIRTTLMTGHPGETAEDFEELCEFVREMRFERLGVFPYSHEDDTWCDRHYQDDVPE 365

Query: 385 NVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPWLQSVV 439
            +K E   R++ +Q  + E+      + +GQ+++VLI++  +E   G+    SP +   V
Sbjct: 366 EIKRERAGRIMQIQAGIAEE---IGRSQIGQVVKVLIDRQEEEYYVGRTEHDSPEVDPEV 422

Query: 440 L--NSKNHNIGDIIKVRITDVKISTLYGEL 467
           L    +   +G+  ++ IT      L+ E+
Sbjct: 423 LIPGERTLQVGEFYRMVITGADEYDLFAEI 452


>gi|210612680|ref|ZP_03289428.1| hypothetical protein CLONEX_01630 [Clostridium nexile DSM 1787]
 gi|210151482|gb|EEA82490.1| hypothetical protein CLONEX_01630 [Clostridium nexile DSM 1787]
          Length = 262

 Score =  130 bits (327), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 82/231 (35%), Positives = 127/231 (54%), Gaps = 13/231 (5%)

Query: 14  VSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIR 73
           V QI D+   P  F V ++GCQMN  DS ++  +    GY      D AD ++ NTC +R
Sbjct: 36  VKQISDELQRPLTFCVTTFGCQMNARDSEKLVGVLEQIGYVEEPDEDKADFVIYNTCTVR 95

Query: 74  EKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQ-AEGEEILRRS-PIVNVVVGPQ 131
           E A  +VY  LG+++++K    K    +++ + GC+ Q  E  E L++S   V+++ G  
Sbjct: 96  ENANMRVYGRLGQLKHVK----KSNPHMMIGLCGCMMQEPEVVEKLKKSYRFVDLIFGTH 151

Query: 132 TYYRLPELLE-RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190
             Y+  EL+  R   G+ V+D  +   DK     + D    RK    + + I  GC+ FC
Sbjct: 152 NIYKFAELIATRFESGRMVIDI-WKDTDKI----VEDLPSERKFSFKSGVNIMFGCNNFC 206

Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD 241
           ++C+VPY RG E SR+   ++ E   L+ +GV E+ LLGQNVN++ GK LD
Sbjct: 207 SYCIVPYVRGRERSRNPKDIIREIEALVADGVMEVMLLGQNVNSY-GKNLD 256


>gi|322434670|ref|YP_004216882.1| MiaB-like tRNA modifying enzyme YliG [Acidobacterium sp. MP5ACTX9]
 gi|321162397|gb|ADW68102.1| MiaB-like tRNA modifying enzyme YliG [Acidobacterium sp. MP5ACTX9]
          Length = 581

 Score =  130 bits (327), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 83/253 (32%), Positives = 134/253 (52%), Gaps = 8/253 (3%)

Query: 176 VTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW 235
            +A++ I EGCD  C+FC++P  RG   SR +  ++ EA+ LI  GV EITL+GQ+   +
Sbjct: 278 ASAYIKIAEGCDHPCSFCIIPQLRGKFRSRRMGSIIAEAQNLIAQGVREITLIGQDTTCY 337

Query: 236 RGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPV 295
            G+ L G K   + LL  L+ + GL  LR+  ++P  ++  L++     D +  YL +P+
Sbjct: 338 -GEDL-GLKEGLAQLLDGLAVLPGLRWLRFLYTYPNKVTTRLLETMARHDTISKYLDVPL 395

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
           Q  S  +LK+M R   A  +  +I + R + P I I + FIVGFPGET+ D++   D V 
Sbjct: 396 QHASPNVLKTMKRGGNAQIFLNLIAKARQIVPGIVIRTSFIVGFPGETEADYKLLEDFVK 455

Query: 356 KIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLR--EQQVSFND--ACVG 411
                    F YS   G     + +  D  V    +   ++KL   +Q++S  +    VG
Sbjct: 456 AARIDWLGVFTYSDEEGAKAFELPD--DTKVPNRTIQARRRKLMKLQQKISTTEKLKWVG 513

Query: 412 QIIEVLIEKHGKE 424
           + I++L+E   +E
Sbjct: 514 REIDLLVEGPSEE 526



 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 41/123 (33%), Positives = 63/123 (51%), Gaps = 11/123 (8%)

Query: 13  MVSQIVDQCIV----PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLN 68
           M S ++D  I     P+  FV S GC  N+ DS  M  +    G E     +DA++IV+N
Sbjct: 1   MPSAVLDPAISAPSKPKVGFV-SLGCPKNLVDSEVMMGLLHHNGAELTPRAEDAEIIVIN 59

Query: 69  TCHIREKAA-EKVYSFLGRIRNLKNSRIKEGGDLL-VVVAGCVAQAEGEEILRRSPIVNV 126
           TC   + A  E V + L  +++    + K GG    ++VAGC+ +   +EI +  P V+ 
Sbjct: 60  TCSFIDSAKQESVNTILEMVQH----KQKNGGKAQRIIVAGCLVERYRDEIQKNIPEVDA 115

Query: 127 VVG 129
           VVG
Sbjct: 116 VVG 118


>gi|300122464|emb|CBK23034.2| unnamed protein product [Blastocystis hominis]
          Length = 465

 Score =  130 bits (327), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 114/435 (26%), Positives = 198/435 (45%), Gaps = 25/435 (5%)

Query: 28  FVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRI 87
           +V ++GC  N+ D   M+ +    GY   +  ++AD+ V+NTC +R+K+   + SF    
Sbjct: 39  YVHTFGCSHNISDGETMKGVLAQGGYNITSKKEEADVWVINTCTVRDKS---IQSF---- 91

Query: 88  RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147
           R L N   K G  L  VVAGC+ +A+    L      +  +G +   ++ E ++   F  
Sbjct: 92  RTLYNEAKKTGKKL--VVAGCMLEADPS--LSSEFHADATLGVRQIAQIKETVDSLFFPP 147

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
               T + V    E  S+      +  GV   + I  GC   CTFC     RG   S  +
Sbjct: 148 ----THHFVSPSDEIPSLQLPKIRKDEGV-EIIPISLGCLGACTFCQTRLARGKLWSYPI 202

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK-GLVRLRYT 266
            +++        NG+ EI L  ++  A+   G+D        L    SE++   V ++  
Sbjct: 203 DEIIKRVHAAKVNGISEIWLTSEDTGAY---GMDRNSSLMELLDRIRSEVEDSNVMVKIG 259

Query: 267 TSHPRDMSDCLIKAHGDLDV--LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
            ++P  +   L      L+      YLH+PVQSGSD +LK MNR++   ++R+I   +  
Sbjct: 260 MTNPPFLKPMLEPLSTILNHKNFYSYLHIPVQSGSDAVLKRMNRKYQVSDFREICSFLSQ 319

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             P I +S+D IVGFP E+ +D   TM L+  +        +Y PR  T  +   EQ+  
Sbjct: 320 HVPGITLSTDIIVGFPYESAEDHAKTMQLLRDLNLNIVHYSRYYPRPHTLAAR-YEQLPI 378

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
           +V   R+  L    +   +   D  VG+ ++V +        +      + + ++++SK 
Sbjct: 379 DVVKSRVKELSDWFK--ALHPYDELVGKEMDVWVSNEKTGDYRCCHTKNYTKVLIVDSKE 436

Query: 445 HNIGDIIKVRITDVK 459
              GD+++V+  + +
Sbjct: 437 FAAGDVVRVKCVEAQ 451


>gi|333030363|ref|ZP_08458424.1| Ribosomal protein S12 methylthiotransferase rimO [Bacteroides
           coprosuis DSM 18011]
 gi|332740960|gb|EGJ71442.1| Ribosomal protein S12 methylthiotransferase rimO [Bacteroides
           coprosuis DSM 18011]
          Length = 431

 Score =  130 bits (326), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 120/450 (26%), Positives = 205/450 (45%), Gaps = 39/450 (8%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGY--ERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           + GC  N+ DS ++     + GY  E        D+ V+NTC     A E+  + +    
Sbjct: 9   TLGCSKNLVDSEQLIRQLEASGYHVEHDPEEPQGDIAVINTCGFIGDAKEESINMI---- 64

Query: 89  NLKNSRIKEGGDL-LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147
            L+ ++ KE G L  + V GC+++   +E+    P V+   G   +  L      A  GK
Sbjct: 65  -LEFAQAKEEGVLDKLFVMGCLSERYLKELQIEIPQVDKFYGKFDWKGL-----LADLGK 118

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
                +Y  +   ER       Y       A+L I EGCD+ C++C +P   G  +SR +
Sbjct: 119 -----NYDPKLHLERSLTTPDHY-------AYLKISEGCDRTCSYCAIPIITGKHVSRPM 166

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYT 266
             ++DE + L+  GV E  ++ Q +  +   G+D  +K    +L+  ++ I G+  +R  
Sbjct: 167 EDILDEVKLLVGQGVREFQVIAQELTYY---GVDLYKKQRLPELIERMAAIPGVEWIRLH 223

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
            ++P      L++   + D +  YL + +Q  SD +L  M R  T  +  ++I R+R+  
Sbjct: 224 YAYPAHFPYDLLRVMRENDNVCKYLDIALQHISDNMLSKMRRNVTKADTLEMIRRMRAEV 283

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT-PGSNMLEQVDEN 385
           P I I +  +VG PGET+ DF    D V ++ + +  +F YS   GT    N  +++ ++
Sbjct: 284 PGIHIRTTLMVGHPGETEQDFEELKDFVREVKFDRMGAFAYSEEEGTFSAKNYEDEISDD 343

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVVL- 440
           VK  RL  L    +          VG    V+I++   E    +GR    SP +   VL 
Sbjct: 344 VKQARLSELMDIQQSVSAEVAQRKVGTEQRVIIDR--IEGEYFIGRTQYDSPEVDPEVLI 401

Query: 441 --NSKNHNIGDIIKVRITDVKISTLYGELV 468
               ++  IG    V+I+      LYG+L+
Sbjct: 402 KDEGQDIEIGYFYDVKISGSDDFDLYGDLI 431


>gi|303286521|ref|XP_003062550.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226456067|gb|EEH53369.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 542

 Score =  129 bits (324), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 111/378 (29%), Positives = 174/378 (46%), Gaps = 39/378 (10%)

Query: 22  IVPQR--FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEK 79
           IVP R    V+++GC  N+ DS  M     + GY    S +DADL V+NTC ++  +   
Sbjct: 107 IVPGRAKVHVRTFGCSHNISDSEFMAGQLSAYGYTLTTSPEDADLWVVNTCTVKNPSQSA 166

Query: 80  VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL 139
           + + +         R K  G  LV+ AGCV Q  G++  R    + ++ G     R+ E 
Sbjct: 167 MNTVI--------ERGKAAGKKLVI-AGCVPQ--GDKNARELDDLTLL-GVTQIDRVVEA 214

Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           +ER   G    D    +  K   L  +D    R+      + +  GC   CT+C   + R
Sbjct: 215 VERTLAG----DAVRMLAKKT--LPALDLPKIRRNEHVEIVPLSTGCLGKCTYCKTKHAR 268

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCT--FSDLLYSLSE 256
           G   S +   +V   +  I  GV EI L  ++  A+   G+D G   T    D+  +L +
Sbjct: 269 GELGSYAPEALVARVQTAIAEGVTEIWLSSEDTGAY---GIDLGTDVTRLLRDVTAALPK 325

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDV-------LMPYLHLPVQSGSDRILKSMNRR 309
             G   LR   ++P       I AH D          +  +LH+PVQ+GSD +L  M R 
Sbjct: 326 -DGSCMLRLGMTNPP-----YILAHLDAVAEAMHHPGVYAFLHIPVQAGSDAVLGRMKRE 379

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369
           +   ++ +++D +    P I I++D I GFPGET++D+  TM L  K  + +    ++ P
Sbjct: 380 YVVADFEKVVDTLLERVPGITIATDIICGFPGETEEDWEMTMALCRKYDFIELHLSQFYP 439

Query: 370 RLGTPGSNMLEQVDENVK 387
           R GTP + M +     VK
Sbjct: 440 RPGTPAARMKKVNSREVK 457


>gi|117928706|ref|YP_873257.1| MiaB-like tRNA modifying enzyme YliG [Acidothermus cellulolyticus
           11B]
 gi|238065272|sp|A0LV11|RIMO_ACIC1 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|117649169|gb|ABK53271.1| SSU ribosomal protein S12P methylthiotransferase [Acidothermus
           cellulolyticus 11B]
          Length = 475

 Score =  129 bits (324), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 114/411 (27%), Positives = 172/411 (41%), Gaps = 42/411 (10%)

Query: 33  GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92
           GC  N  D+  +       G+ R+     AD+ V+NTC   E A ++    L    +   
Sbjct: 13  GCARNDVDAEELAARLVDAGW-RLTEAPSADVTVVNTCGFIEAAKQESIDTLLEAAD--- 68

Query: 93  SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDT 152
                 G   VV  GC+A+  G  +    P   ++     Y  + + LE    G+     
Sbjct: 69  ------GSTRVVAVGCLAERYGAALADAMPEATILSF-DDYPVIAQRLEDVLAGRPPAPH 121

Query: 153 DYSVEDKFERLSIVD--------------GGYNRKR-----GVTAFLTIQEGCDKFCTFC 193
                     L+ VD              GG    R        A L I  GCD+ CTFC
Sbjct: 122 TPRDRRTLLPLTPVDRPRAAAEVGIPGHLGGPRVLRHRLDDSPVAPLKIASGCDRRCTFC 181

Query: 194 VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS 253
            +P  RG  +SR  + ++ EA+ L D+G  EI L+ +N  ++ GK L G+      LL +
Sbjct: 182 AIPSFRGAFVSRPPADILREAQWLADHGAREIVLVSENSTSY-GKDL-GDPFALEKLLAA 239

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
              + GLVR+R T   P ++   LI        + PY  L  Q  S R+L+ M R   + 
Sbjct: 240 FGGVDGLVRVRVTYLQPAEVRPALIDVIATAPHVAPYFDLSFQHASPRVLRRMRRFGGSE 299

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL-----VDKIGYAQAFSFKYS 368
           E+  ++  IR   P  A+ S+ IVGFPGET++D     +      +D IG      F YS
Sbjct: 300 EFLNLLAEIRRRNPRAAVRSNVIVGFPGETEEDVAELGEFLRAARLDGIGV-----FGYS 354

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419
              GT  S   E++ E     R+  +     E       A +G+ ++VLI+
Sbjct: 355 DEDGTEASGFPEKIPEQEIRSRVDDIAGIAEEVTADRARARLGETVDVLID 405


>gi|284030926|ref|YP_003380857.1| MiaB-like tRNA modifying enzyme YliG [Kribbella flavida DSM 17836]
 gi|283810219|gb|ADB32058.1| MiaB-like tRNA modifying enzyme YliG [Kribbella flavida DSM 17836]
          Length = 544

 Score =  129 bits (323), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 78/246 (31%), Positives = 127/246 (51%), Gaps = 2/246 (0%)

Query: 175 GVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA 234
           G  A L +  GCD+ C FC +P  RG  +SR  ++V+ EA+ L ++GV E+ L+ +N  +
Sbjct: 232 GPMAPLKLASGCDRRCAFCAIPAFRGAFVSRRPTEVLGEAQWLAEHGVREVFLVSENSTS 291

Query: 235 WRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP 294
           + GK L G+      L+  ++ + GL R+R +   P +M   LI A      ++PY  L 
Sbjct: 292 Y-GKDL-GDLRLLETLVGEIAAVPGLTRVRVSYLQPAEMRPTLITAMTSTPGVVPYFDLS 349

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
            Q  S  +L+ M R   A  + ++I+++R   P   I S+ IVGFPGET+ D     D +
Sbjct: 350 FQHASGPLLRRMRRFGDAERFLELIEQVRGQAPTAGIRSNVIVGFPGETEQDVDILCDFL 409

Query: 355 DKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQII 414
            + G      F YS   GT       ++DE+  A RL  + +   +   +  +A +G+ +
Sbjct: 410 SRAGLDAIGVFGYSDEDGTEAETYDGKLDEDTIAARLDRVTRLAEDLTSARAEARIGETV 469

Query: 415 EVLIEK 420
           EVL+E 
Sbjct: 470 EVLVES 475



 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 50/111 (45%), Gaps = 6/111 (5%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC  N  DS  +     + G+  V    DAD +V+NTC   E A +     L     L
Sbjct: 24  TLGCARNDVDSEELAGRLEAGGFRLVEDAADADTVVVNTCGFVEAAKKDSVDTL-----L 78

Query: 91  KNSRIKEGGDLLVVVA-GCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140
             S  K+ G    VVA GC+A+  GE++    P  + V+G   Y  + + L
Sbjct: 79  AASDYKDSGRTQAVVAVGCLAERYGEQLAEALPETDAVLGFDDYADISDKL 129


>gi|323509405|dbj|BAJ77595.1| cgd6_1520 [Cryptosporidium parvum]
          Length = 493

 Score =  129 bits (323), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 102/366 (27%), Positives = 178/366 (48%), Gaps = 31/366 (8%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +  VK++GC  N  DS  M  +    GY  V  +D+ +LIV+N+C ++  + +   + + 
Sbjct: 103 KIMVKNFGCNHNRSDSESMMGLLSEYGYTLVEELDECNLIVINSCTVKGPSQDSCQNLI- 161

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNV-VVGPQTYYRLPELLERAR 144
               L  S+ K      VVV GCV QA+    +  + + +V ++G +  +R+ E++E   
Sbjct: 162 ---ELAKSKRK-----FVVVTGCVPQAD----INLNFLKDVSIIGVRNIHRIVEVVELTL 209

Query: 145 FGKRVVDTDYSVEDK----FERLSIVDGGYN----RKRGVTAFLTIQEGCDKFCTFCVVP 196
            G  V+     +E K     + L I     +    R+      +TI  GC   CT+C   
Sbjct: 210 QGNIVLLIPDKMEGKSGQLIDSLEISLPPLSLPKIRRNPFVEIITISVGCLGNCTYCKTK 269

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256
           ++RG   S  +  ++    + ++ GV +  L  +++ A+ GK +       S+LL  + +
Sbjct: 270 HSRGDLGSYPVETIIQRINQSLNEGVKQFWLTSEDIGAY-GKDIG---TNLSELLREILK 325

Query: 257 IKGL-VRLRYTTSHPR---DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
           I    + +R   ++P    D  D +I      +V   +LH+PVQSGS+RIL  M R +  
Sbjct: 326 ILPQDIMIRIGMTNPPYILDQIDEIIDIMKHPNVF-EFLHIPVQSGSNRILDLMKRDYVI 384

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
            E+  ++D I    P   I++D I GFPGE+D D   +++L++K  +      K+ PR G
Sbjct: 385 EEFSLLVDSILKEIPLATIATDIICGFPGESDQDHFQSVELINKYKFPVINISKFYPRPG 444

Query: 373 TPGSNM 378
           TP + M
Sbjct: 445 TPAAKM 450


>gi|118475302|ref|YP_892512.1| hypothetical protein CFF8240_1371 [Campylobacter fetus subsp. fetus
           82-40]
 gi|238065315|sp|A0RQM9|RIMO_CAMFF RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|118414528|gb|ABK82948.1| conserved hypothetical protein [Campylobacter fetus subsp. fetus
           82-40]
          Length = 436

 Score =  128 bits (322), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 110/457 (24%), Positives = 214/457 (46%), Gaps = 35/457 (7%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           +P  + V S GC  N+ DS  M     S  Y  V+  ++AD++++NTC   E A E+   
Sbjct: 1   MPNLYLV-SLGCNKNLVDSEIMLGRLSS--YNIVDKPNNADVMIVNTCGFIESAKEESVR 57

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +  + + K    KE    ++VV GC+ Q   +E+++  P V++  G   Y  + E++ +
Sbjct: 58  TILELASYK----KENS--VLVVTGCLMQRYRDELMKELPEVDIFTGVGDYASIDEMILK 111

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            +    +      ++    +  I    Y+      A++ I EGC++ C+FC +P  +G  
Sbjct: 112 KQ---NLFSPGVYLQKSDTKRVITGSSYH------AYIKIAEGCNQKCSFCAIPTFKGKL 162

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-RGKGL-DGEKCTFSDLLYSLSEIKGL 260
            SR ++ ++ E ++L  +G  + + + Q+ +++ R  G+ DG       L+  + +I+ +
Sbjct: 163 KSRDINSIIKEVKELTKDGYSDFSFIAQDTSSFLRDAGINDG----LIKLIDEVEKIEAV 218

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
              R    +P   S  LI         + Y  +P+Q  +D +LK M R  +    ++++ 
Sbjct: 219 KSARILYLYPTTASMGLIDKIIASPKFVNYFDMPIQHINDDMLKIMRRGSSKERLKELLT 278

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R V P   + +  I+G PGET + F    D + +  + +  +F YS   GT    M E
Sbjct: 279 KMR-VAPKSFLRTGIIIGHPGETGERFDELCDFLTEFKFDRISAFAYSKEEGTLAYEM-E 336

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSP--WLQ-- 436
           Q+      +RL  ++K +++Q      + VG++I+V I     E     G     W +  
Sbjct: 337 QIPSKTITKRLNTIEKIIKKQIEGSFKSLVGEVIKVQINGSSSEGEMFFGAKSIIWDREI 396

Query: 437 --SVVLNS---KNHNIGDIIKVRITDVKISTLYGELV 468
              +++N    K+  +G+I   +I +     L GE++
Sbjct: 397 DGEILINDTQIKDPKVGEIYDCKINEFVKDKLIGEII 433


>gi|223937022|ref|ZP_03628930.1| MiaB-like tRNA modifying enzyme YliG [bacterium Ellin514]
 gi|223894303|gb|EEF60756.1| MiaB-like tRNA modifying enzyme YliG [bacterium Ellin514]
          Length = 556

 Score =  128 bits (322), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 92/315 (29%), Positives = 157/315 (49%), Gaps = 39/315 (12%)

Query: 178 AFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-- 235
           A++ I EGC+  C+FC++P  RG   SR  + +V EA++LI +GV E+ L+ Q+   +  
Sbjct: 215 AYVKIAEGCNHPCSFCIIPRMRGSHRSRVQADIVREAKQLIADGVKELNLISQDSTYYGL 274

Query: 236 ------------------RGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCL 277
                               K L  +  T   LL  L+ I G   +R   +HP   +D L
Sbjct: 275 DLRPNHSRNIASPEKFNSAAKSLPADATTLCTLLRELNAIPGDFWIRLLYTHPAHWTDEL 334

Query: 278 IKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY-RQIIDRIRSVRPDIAISSDFI 336
           I+       +  Y+ +P+Q   + +L+ M RR T+ +Y   +I RIR+  P IAI + FI
Sbjct: 335 IQTIAKCKKVARYVDMPLQHIHENMLERM-RRETSEQYIVNLIQRIRAGIPGIAIRTTFI 393

Query: 337 VGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERL-LCLQ 395
           VGFPGET+  F+  ++ +    + +   F YS   GT   NM  Q+ + +K++R  L + 
Sbjct: 394 VGFPGETETYFKTLLNFIRDTKFERLGVFTYSKEDGTRAGNMEGQLADKIKSKRRELAMA 453

Query: 396 KKLR-EQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVR 454
           ++L+  +QV+  ++ VG+ + VL+E     K         L++  ++S  H +     +R
Sbjct: 454 EQLKVAKQVA--ESFVGKELRVLVEAEASAKE--------LKNAKISSWEHGL-----IR 498

Query: 455 ITDVKISTLYGELVV 469
             D ++  L G  +V
Sbjct: 499 GEDKQLGQLKGRYLV 513



 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 59/120 (49%), Gaps = 3/120 (2%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P R  + S GC  N+ D+  M       G E  N    AD++++NTC   + A E+    
Sbjct: 10  PVRVGLISLGCAKNLVDAEIMLGSLMKGGVEITNDATQADVVIVNTCSFIDSAQEESVDT 69

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           + +   ++ +  +  G   ++V+GC+ Q   EE+ +  P V+V +G     ++ E++ +A
Sbjct: 70  ILQSEEVREANNRGQG---LIVSGCLPQRFREELPKLLPEVDVFMGIDQVAQVTEIVHKA 126


>gi|218131133|ref|ZP_03459937.1| hypothetical protein BACEGG_02738 [Bacteroides eggerthii DSM 20697]
 gi|217986653|gb|EEC52987.1| hypothetical protein BACEGG_02738 [Bacteroides eggerthii DSM 20697]
          Length = 432

 Score =  128 bits (321), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 116/450 (25%), Positives = 204/450 (45%), Gaps = 39/450 (8%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEKVYSFLGRIR 88
           + GC  N+ DS  +       G+   +  +     + V+NTC     A E+  + +    
Sbjct: 10  TLGCSKNLVDSEHLMRQLEEAGFCVTHDAERPKGQIAVINTCGFIGDAKEESINMI---- 65

Query: 89  NLKNSRIKEGGDL-LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147
            L+ ++ KE G+L  + V GC+++   +E+    P V+   G   +  L + L +A    
Sbjct: 66  -LEFAQAKEEGNLEKLYVMGCLSERYLKELAIEIPQVDKFYGKFNWKELLQDLGKA---- 120

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
                 Y  E   ER       Y       A+L I EGCD+ C++C +P   G  ISR +
Sbjct: 121 ------YHEELHIERTLTTPKHY-------AYLKISEGCDRKCSYCAIPIITGRHISRPI 167

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYT 266
            +++DE R L+  GV E  ++ Q +  +   G+D  +K    +L+  +S++ G+  +R  
Sbjct: 168 EEILDEVRYLVARGVKEFQVIAQELTYY---GVDLYKKQMLPELIERISDVPGVEWIRLH 224

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
            ++P      L +   +   +  Y+ + +Q  SD +L  M R  T  E  ++I++ R   
Sbjct: 225 YAYPAHFPMDLFRVMRERSNVCKYMDIALQHISDNMLDKMRRHVTKEETYRLIEKFREEV 284

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ-VDEN 385
           P I + +  +VG PGET+ DF    + V K+ + +  +F YS   GT  +   E  V   
Sbjct: 285 PGIHLRTTLMVGHPGETEADFEELKEFVRKVRFDRMGAFAYSEEEGTYAAAHYEDAVPPE 344

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVVL- 440
           VK  RL  L    +      +   VG+ ++V+I++  +E    VGR    SP +   VL 
Sbjct: 345 VKQARLDELMSIQQGISAELSAGKVGKRMKVIIDR--REGDYYVGRTEFDSPEVDPEVLI 402

Query: 441 --NSKNHNIGDIIKVRITDVKISTLYGELV 468
                +  IG+  +V I +     L+G ++
Sbjct: 403 ECGDASLEIGNFYQVEIINSDDFDLFGRII 432


>gi|145593944|ref|YP_001158241.1| MiaB-like tRNA modifying enzyme YliG [Salinispora tropica CNB-440]
 gi|238066595|sp|A4X4R3|RIMO_SALTO RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|145303281|gb|ABP53863.1| MiaB-like tRNA modifying enzyme YliG [Salinispora tropica CNB-440]
          Length = 507

 Score =  128 bits (321), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 117/471 (24%), Positives = 198/471 (42%), Gaps = 69/471 (14%)

Query: 13  MVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHI 72
           MVS         +R  + + GC  N  DS  +     S G++     + AD++V+NTC  
Sbjct: 1   MVSATPPAPADGRRVALLTLGCARNEVDSEELAARLHSDGWQVTTDGEGADVVVVNTCGF 60

Query: 73  REKAAE-KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ 131
            EKA +  + + L                  VV AGC+A+  G E+    P    V+   
Sbjct: 61  VEKAKQDSIQTLLAAAETGAK----------VVAAGCMAERYGRELAESLPEAQAVLSFD 110

Query: 132 TYYRLPELLER--ARFGKRVVDTDYSVEDKFERLSIVD----------GGYN-------- 171
            Y   P++ +R  A      +D  ++  D+ E L +             G+         
Sbjct: 111 DY---PDISDRLGAVLAGTAIDA-HTPRDRRELLPLTPVRRGEAAVSLPGHGTPAAVAQP 166

Query: 172 ---------------------RKR---GVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
                                R+R   G  A L +  GCD+ C FC +P  RG  +SR  
Sbjct: 167 GARSAPIEVDEHTPAHLRPVLRRRLDTGPVASLKLASGCDRRCAFCAIPAFRGAFVSRPP 226

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
             ++ EA  L   GV E+ L+ +N +++ GK L G+      LL  L+ + G+VR+R + 
Sbjct: 227 EALLAEAEWLARTGVRELVLVSENSSSY-GKDL-GDPRALEKLLPQLAAVDGIVRVRASY 284

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
             P +    L++A      + PY  L  Q  S+ +L+ M R  +   + +++  IR++ P
Sbjct: 285 LQPAETRPGLVEAIATTPGVAPYFDLSFQHSSEAVLRRMRRFGSTDRFLELLGSIRALSP 344

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV- 386
           +    S+FIVGFPGET  D    +  +++        F YS   GT  + +  +V     
Sbjct: 345 EAGARSNFIVGFPGETRADVAELVRFLEEARLDAIGVFDYSDEDGTEAAGLSGKVTTATV 404

Query: 387 --KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK--HGKEKGKLVGRSP 433
             + +RL  L  +L  Q+       +G  ++VL++    G  +G+   ++P
Sbjct: 405 KRRYDRLSALADELCAQRAEQR---LGSTVQVLVDSVDGGVVEGRAAHQAP 452


>gi|317476990|ref|ZP_07936232.1| MiaB-like tRNA modifying enzyme YliG [Bacteroides eggerthii
           1_2_48FAA]
 gi|316906783|gb|EFV28495.1| MiaB-like tRNA modifying enzyme YliG [Bacteroides eggerthii
           1_2_48FAA]
          Length = 432

 Score =  128 bits (321), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 116/450 (25%), Positives = 203/450 (45%), Gaps = 39/450 (8%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEKVYSFLGRIR 88
           + GC  N+ DS  +       G+   +  +     + V+NTC     A E+  + +    
Sbjct: 10  TLGCSKNLVDSEHLMRQLEEAGFCVTHDAERPKGQIAVINTCGFIGDAKEESINMI---- 65

Query: 89  NLKNSRIKEGGDL-LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147
            L+ ++ KE G+L  + V GC+++   +E+    P V+   G   +  L + L +A    
Sbjct: 66  -LEFAQAKEEGNLEKLYVMGCLSERYLKELAIEIPQVDKFYGKFNWKELLQDLGKA---- 120

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
                 Y  E   ER       Y       A+L I EGCD+ C++C +P   G  ISR +
Sbjct: 121 ------YHEEFHIERTLTTPTHY-------AYLKISEGCDRKCSYCAIPIITGRHISRPI 167

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYT 266
            +++DE R L+  GV E  ++ Q +  +   G+D  +K    +L+  +S++ G+  +R  
Sbjct: 168 EEILDEVRYLVTRGVKEFQVIAQELTYY---GVDLYKKQMLPELIERISDVPGVEWIRLH 224

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
            ++P      L +   +   +  Y+ + +Q  SD +L  M R  T  E  ++I+  R   
Sbjct: 225 YAYPAHFPMDLFRVMRERSNVCKYMDIALQHISDNMLDKMRRHVTKEETYRLIEEFREEV 284

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE-QVDEN 385
           P I + +  +VG PGET+ DF    + V K+ + +  +F YS   GT  +   E  V   
Sbjct: 285 PGIHLRTTLMVGHPGETEADFEELKEFVRKVRFDRMGAFAYSEEEGTYAAAHYEDSVPPE 344

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVVL- 440
           VK  RL  L    +      +   VG+ ++V+I++  +E    VGR    SP +   VL 
Sbjct: 345 VKQARLDELMSIQQGISAELSAGKVGKRMKVIIDR--REGDYYVGRTEFDSPEVDPEVLI 402

Query: 441 --NSKNHNIGDIIKVRITDVKISTLYGELV 468
                +  IG+  +V I +     L+G ++
Sbjct: 403 ECGDASLEIGNFYQVEIINSDDFDLFGRII 432


>gi|46199556|ref|YP_005223.1| hypothetical protein TTC1254 [Thermus thermophilus HB27]
 gi|55981587|ref|YP_144884.1| hypothetical protein TTHA1618 [Thermus thermophilus HB8]
 gi|46197182|gb|AAS81596.1| conserved hypothetical protein [Thermus thermophilus HB27]
 gi|55773000|dbj|BAD71441.1| conserved hypothetical protein [Thermus thermophilus HB8]
          Length = 436

 Score =  128 bits (321), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 123/447 (27%), Positives = 214/447 (47%), Gaps = 37/447 (8%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVN-SMDDADLIVLNTCHIREKAAEKVYSFL 84
           R   ++ GC++N  ++  +     +   E V      ADL+V+N+C +   A       +
Sbjct: 2   RAAFRTLGCKVNQVETEALLGFLKALEPEVVPLEAGGADLVVINSCAVTTTAEADTRKEV 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R R              +VV GC A+    E+L+     + VV       LP ++   R
Sbjct: 62  RRARRYNP-------HAFIVVTGCYAEL-APEVLKEL-GADAVVPNARKAELPRVI-LER 111

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
           FG   + +D       E     + G    R V AFL +Q+GC   C +C++P  RG E  
Sbjct: 112 FG---LPSDPITTPPNEFWGAGERGLLNSR-VRAFLKVQDGCQAGCAYCIIPRLRGKERH 167

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG--KGLDGEKCTFSDLLYSLSEIKGLVR 262
           R   + + EA  L+  G+ EI L G  + +++G  +GL G      + LY L       +
Sbjct: 168 RDHREALAEAEALLRMGIKEIVLTGVRLGSYKGHPRGLAG----LVEDLYHLG-----AK 218

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDV-LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           +R ++  P D  + L+K  G     + P+LHL +Q+GSDR+LK M RR+    YR+++ R
Sbjct: 219 VRLSSIEPEDTGEDLLKVIGRYAPEVRPHLHLSLQTGSDRLLKLMGRRYDKAYYRELVQR 278

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
              + P  A+++D I G P ET+++ R T+  ++++   +  +F Y+PR  T  ++M  Q
Sbjct: 279 AYDLIPGFALTTDVIAGLPTETEEEHRETLAFLEELRPTRVHAFTYTPRPKTRAASM-PQ 337

Query: 382 VDENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSV 438
           V   V+  R   L+ L ++L E+++      +G+ +EVL+E+   + G+ +G +P     
Sbjct: 338 VPPEVRKRRTKELIALAQRLAEERIRPR---LGERVEVLVER--VQGGEALGHTPDYYEA 392

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYG 465
            L  +    G+ +  R+  V+   L G
Sbjct: 393 RLEGEARP-GETVWARVHGVEGYVLLG 418


>gi|15639261|ref|NP_218710.1| hypothetical protein TP0269 [Treponema pallidum subsp. pallidum
           str. Nichols]
 gi|189025503|ref|YP_001933275.1| hypothetical protein TPASS_0269 [Treponema pallidum subsp. pallidum
           SS14]
 gi|6136505|sp|O83293|Y269_TREPA RecName: Full=Putative methylthiotransferase TP_0269
 gi|3322542|gb|AAC65257.1| conserved hypothetical protein [Treponema pallidum subsp. pallidum
           str. Nichols]
 gi|189018078|gb|ACD70696.1| hypothetical protein TPASS_0269 [Treponema pallidum subsp. pallidum
           SS14]
 gi|291059672|gb|ADD72407.1| hypothetical protein TPChic_0269 [Treponema pallidum subsp.
           pallidum str. Chicago]
 gi|308208122|gb|ADO20311.1| putative tRNA modification protein [Treponema pallidum subsp.
           pallidum]
 gi|313505246|gb|ADR64389.1| putative MiaB tRNA modification protein [Treponema pallidum subsp.
           pallidum str. Mexico A]
          Length = 482

 Score =  128 bits (321), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 68/219 (31%), Positives = 117/219 (53%), Gaps = 6/219 (2%)

Query: 178 AFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG 237
           A + +Q+GC+  C FC + + RG  +S    +V+   + L   G+ E+ L G N++ +R 
Sbjct: 205 ASIKVQDGCNSGCAFCRIRFARGRAVSLETHEVIGRVQALEARGMSEVVLTGVNLSQYRS 264

Query: 238 KGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQS 297
             +D     F+ LL  + +    + +R ++ +P  ++   ++A     V  P+ HL VQS
Sbjct: 265 GSID-----FAGLLELIVQETHTIHIRISSLYPESVTSAFLRAIAHTRV-SPHFHLSVQS 318

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
           GSDR+L+ M R +T  +  Q +  +RSVR +  +  D IVGFPGET++DF  T  +   +
Sbjct: 319 GSDRVLRRMRRAYTRADIYQAVSDLRSVREEPFLGCDIIVGFPGETEEDFADTQRMCKTL 378

Query: 358 GYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQK 396
            +A    F +S R GT    M  +V + +  ER+  +Q+
Sbjct: 379 RFAGIHVFPFSARPGTEAFAMDAKVPQRIAGERVAAMQQ 417


>gi|153005211|ref|YP_001379536.1| RNA modification protein [Anaeromyxobacter sp. Fw109-5]
 gi|152028784|gb|ABS26552.1| RNA modification enzyme, MiaB family [Anaeromyxobacter sp. Fw109-5]
          Length = 450

 Score =  128 bits (321), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 83/237 (35%), Positives = 125/237 (52%), Gaps = 9/237 (3%)

Query: 179 FLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEAR---KLIDNGVCEITLLGQNVNAW 235
           FL IQ+GCD  C++CVVP  RG   +RSL+   DEA     L+     EI + G ++ A+
Sbjct: 155 FLKIQDGCDARCSYCVVPLARGP--ARSLA--FDEALGRLSLLGARHAEIVVAGVHLGAY 210

Query: 236 RGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPV 295
            G+ L   + T +DL+ +        RLR ++  P ++   L+        L P+LHLP+
Sbjct: 211 -GRDLSPRR-TLADLIRAAVGGGLRARLRLSSLEPLEVPLDLLDDPAVAPALCPHLHLPL 268

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
           QSGSDRIL +M R + A  YR+      +  P + + +D + GFPGETDDD RAT+ L++
Sbjct: 269 QSGSDRILAAMRRPYRADGYRRAALEGAARLPGLCLGADVVTGFPGETDDDHRATLSLIE 328

Query: 356 KIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQ 412
            +  A    F++SPR GT  + +   V   V   R   L      +  +F D  +G+
Sbjct: 329 ALPLAYLHVFRFSPRPGTEAAALPSAVPGAVARARAAELVALSERRWRAFLDGLLGK 385


>gi|270296681|ref|ZP_06202880.1| MiaB-like tRNA modifying enzyme YliG [Bacteroides sp. D20]
 gi|270272668|gb|EFA18531.1| MiaB-like tRNA modifying enzyme YliG [Bacteroides sp. D20]
          Length = 432

 Score =  128 bits (321), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 113/448 (25%), Positives = 205/448 (45%), Gaps = 35/448 (7%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEKVYSFLGRIR 88
           + GC  N+ DS  +       G+   +  +     + V+NTC     A E+  + +    
Sbjct: 10  TLGCSKNLVDSEHLMRQLEEVGFHVTHDAERPKGQIAVINTCGFIGDAKEESINMI---- 65

Query: 89  NLKNSRIKEGGDL-LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147
            L+ ++ KE G+L  + V GC+++   +E+    P V+   G   +  L + L +A    
Sbjct: 66  -LEFAQAKEEGNLEKLYVMGCLSERYLKELAVEIPQVDKFYGKFNWRELLQDLGKA---- 120

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
                 Y  E   ER       Y       A+L I EGCD+ C++C +P   G  +SR +
Sbjct: 121 ------YHDELHIERTLTTPKHY-------AYLKISEGCDRKCSYCAIPIITGRHVSRPM 167

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYT 266
            +++DE + L+  GV E  ++ Q +  +   G+D  +K    +L+  +S+I G+  +R  
Sbjct: 168 EEILDEVKYLVARGVKEFQVIAQELTYY---GVDLYKKQMLPELVERISDIPGVEWIRLH 224

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
            ++P      L +   + D +  Y+ + +Q  SD +L+ M R  T  E  ++I++ R   
Sbjct: 225 YAYPAHFPTDLFRVMRERDNVCKYMDIALQHISDNMLQKMRRHVTKDETYKLIEQFREEV 284

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE-QVDEN 385
           P I + +  +VG PGET+ DF    + V K+ + +  +F YS   GT  +   E  + + 
Sbjct: 285 PGIHLRTTLMVGHPGETEADFEELKEFVRKVRFDRMGAFAYSEEEGTYAAAEYEDSIPQE 344

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPWLQSVVL--- 440
           VK  RL  L    +      +   VG+ ++V+I++   E   G+    SP +   VL   
Sbjct: 345 VKQARLDELMSIQQGISGELSAEKVGRQMKVIIDRLEGEYYIGRTEFDSPEVDPEVLIER 404

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
             +  +IG+   V I +     L+G ++
Sbjct: 405 GDRALHIGNFYHVEIVNSDDFDLFGRII 432


>gi|308208098|gb|ADO20291.1| putative tRNA modification protein [Treponema pallidum subsp.
           pertenue]
 gi|308208104|gb|ADO20296.1| putative tRNA modification protein [Treponema pallidum subsp.
           pertenue str. Gauthier]
 gi|308208110|gb|ADO20301.1| putative tRNA modification protein [Treponema pallidum subsp.
           pertenue]
 gi|308208116|gb|ADO20306.1| putative tRNA modification protein [Treponema pallidum]
          Length = 482

 Score =  127 bits (320), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 68/219 (31%), Positives = 117/219 (53%), Gaps = 6/219 (2%)

Query: 178 AFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG 237
           A + +Q+GC+  C FC + + RG  +S    +V+   + L   G+ E+ L G N++ +R 
Sbjct: 205 ASIKVQDGCNSGCAFCRIRFARGRAVSLETHEVIGRVQALEARGMSEVVLTGVNLSQYRS 264

Query: 238 KGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQS 297
             +D     F+ LL  + +    + +R ++ +P  ++   ++A     V  P+ HL VQS
Sbjct: 265 GSID-----FAGLLELIVQETHTIHIRISSLYPESVTSAFLRAIAHTRV-SPHFHLSVQS 318

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
           GSDR+L+ M R +T  +  Q +  +RSVR +  +  D IVGFPGET++DF  T  +   +
Sbjct: 319 GSDRVLRRMRRAYTRADIYQAVSDLRSVRGEPFLGCDIIVGFPGETEEDFADTQRMCKTL 378

Query: 358 GYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQK 396
            +A    F +S R GT    M  +V + +  ER+  +Q+
Sbjct: 379 RFAGIHVFPFSARPGTEAFAMDAKVPQRIAGERVAAMQQ 417


>gi|317480049|ref|ZP_07939161.1| MiaB-like tRNA modifying enzyme YliG [Bacteroides sp. 4_1_36]
 gi|316903791|gb|EFV25633.1| MiaB-like tRNA modifying enzyme YliG [Bacteroides sp. 4_1_36]
          Length = 432

 Score =  127 bits (320), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 113/448 (25%), Positives = 205/448 (45%), Gaps = 35/448 (7%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEKVYSFLGRIR 88
           + GC  N+ DS  +       G+   +  +     + V+NTC     A E+  + +    
Sbjct: 10  TLGCSKNLVDSEHLMRQLEEVGFHVTHDAERPKGQIAVINTCGFIGDAKEESINMI---- 65

Query: 89  NLKNSRIKEGGDL-LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147
            L+ ++ KE G+L  + V GC+++   +E+    P V+   G   +  L + L +A    
Sbjct: 66  -LEFAQAKEEGNLEKLYVMGCLSERYLKELAVEIPQVDKFYGKFNWRELLQDLGKA---- 120

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
                 Y  E   ER       Y       A+L I EGCD+ C++C +P   G  +SR +
Sbjct: 121 ------YHDELHIERTLTTPKHY-------AYLKISEGCDRKCSYCAIPIITGRHVSRPM 167

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYT 266
            +++DE + L+  GV E  ++ Q +  +   G+D  +K    +L+  +S+I G+  +R  
Sbjct: 168 EEILDEVKYLVARGVKEFQVIAQELTYY---GVDLYKKQMLPELVERISDIPGVEWIRLH 224

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
            ++P      L +   + D +  Y+ + +Q  SD +L+ M R  T  E  ++I++ R   
Sbjct: 225 YAYPAHFPADLFRVMRERDNVCKYMDIALQHISDNMLQKMRRHVTKDETYKLIEQFREEV 284

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE-QVDEN 385
           P I + +  +VG PGET+ DF    + V K+ + +  +F YS   GT  +   E  + + 
Sbjct: 285 PGIHLRTTLMVGHPGETEADFEELKEFVRKVRFDRMGAFAYSEEEGTYAAAEYEDSIPQE 344

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPWLQSVVL--- 440
           VK  RL  L    +      +   VG+ ++V+I++   E   G+    SP +   VL   
Sbjct: 345 VKQARLDELMSIQQGISGELSAEKVGRQMKVIIDRLEGEYYIGRTEFDSPEVDPEVLIER 404

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
             +  +IG+   V I +     L+G ++
Sbjct: 405 GDRALHIGNFYHVEIVNSDDFDLFGRII 432


>gi|88603600|ref|YP_503778.1| MiaB-like tRNA modifying enzyme [Methanospirillum hungatei JF-1]
 gi|88189062|gb|ABD42059.1| MiaB-like tRNA modifying enzyme [Methanospirillum hungatei JF-1]
          Length = 428

 Score =  127 bits (320), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 111/445 (24%), Positives = 194/445 (43%), Gaps = 56/445 (12%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           ++++GC  NV DS  +  +  + G   V+  + A+++++NTC +      K+        
Sbjct: 33  IRTFGCAYNVGDSDLLASVLTASGSVIVSDPELAEVMIINTCIVIASTERKMLK------ 86

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
                 I    D  V V GC+  A  E +   + +   ++ P + +R    +        
Sbjct: 87  -----EISSYPDHEVYVTGCLPLALPESLQEHTTVK--LIHPDSIHRAAATVS------- 132

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
                                Y++K G  + + I  GC   C +C+    RG   S S  
Sbjct: 133 ---------------------YDQK-GPVSVVQIGPGCVGSCRYCITRCARGSIRSNSPH 170

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
           Q+       +  G  EI L GQ+++A+   G D  + + + LL  +  +  + R+R    
Sbjct: 171 QIYSHIASCVRGGAVEIRLAGQDLSAY---GHDTGQWSLATLLEGIPALPDITRIRLGMM 227

Query: 269 HPRDMSDCLIKAHGDLD--VLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
           +P  +     +    ++      +LHLP+QSGSD +L  M R +T  + + IID  R+  
Sbjct: 228 NPATLKPIAQRVARTMNNGPFFSFLHLPIQSGSDHVLDLMGRGYTVADVQNIIDIFRAEM 287

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
            DI I++D I GFPGETDDD   T+ L+ +I        +YS R GT G +   ++ + +
Sbjct: 288 SDITIATDIITGFPGETDDDHEETVRLIRRIAPGMVNVTRYSWRPGT-GMSRDHELPDRI 346

Query: 387 KAERLLCLQKKLREQQVSF---NDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
           + ER   +   +RE    F   N+   G ++ V+  +  K  G ++ RS   + VV+  +
Sbjct: 347 RKERSRAI---IRESYTMFQKANEKMKGAVMRVIPTEQLK-PGSVMARSERYEGVVIREE 402

Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468
              +G    V IT      L GE++
Sbjct: 403 CQ-LGIPCMVTITGSTPHYLIGEVI 426


>gi|227872339|ref|ZP_03990693.1| tRNA 2-methylthioadenine synthetase [Oribacterium sinus F0268]
 gi|227841822|gb|EEJ52098.1| tRNA 2-methylthioadenine synthetase [Oribacterium sinus F0268]
          Length = 247

 Score =  127 bits (319), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 74/210 (35%), Positives = 116/210 (55%), Gaps = 20/210 (9%)

Query: 33  GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92
           GCQM+  D  +++ +    GY      ++AD+I+  TC +RE A +K+Y  +G++++L  
Sbjct: 50  GCQMSAKDGEKLQGILQEAGYSITEKEEEADVILFTTCTVRENANQKLYGRIGQLKHL-- 107

Query: 93  SRIKEGGDLLVVVAGCVAQA--EGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
              +   DL++ + GC+ Q   E E I R+ P V+++ G    Y+L E L         +
Sbjct: 108 --YQRNKDLIIGITGCMMQEKDEVETIQRKYPYVHLIFGTHNIYKLAEYL---------L 156

Query: 151 DTDYSVEDKFERLS----IVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           +T  S E K E L     IV+     RK    A + I  GC+ FCT+C+VPY RG E SR
Sbjct: 157 ETMLSKEKKVELLEDSAEIVENLPSKRKYSFRAAVNISFGCNNFCTYCIVPYVRGREKSR 216

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAW 235
           +  +++ E   L+ +GV EI LLGQNVN++
Sbjct: 217 NSQEILKECEALVADGVKEIMLLGQNVNSY 246


>gi|48429440|gb|AAT42488.1| YleA [Escherichia coli B]
          Length = 168

 Score =  127 bits (319), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 66/167 (39%), Positives = 103/167 (61%), Gaps = 1/167 (0%)

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           L  M R HTA EY+ II ++R+ RPDI ISSDFIVGFPGET +DF  TM L+  + +  +
Sbjct: 1   LNLMGRTHTALEYKAIIRKLRAARPDIQISSDFIVGFPGETTEDFEKTMKLIADVNFDMS 60

Query: 363 FSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422
           +SF +S R GTP ++M++ V E  K +RL  LQ+++ +Q ++++   +G    +L+E   
Sbjct: 61  YSFIFSARPGTPAADMVDDVPEEEKKQRLYILQERINQQAMAWSRRMLGTTQRILVEGTS 120

Query: 423 KEK-GKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           ++   +L GR+   + V        IG  + V ITDV  ++L G++V
Sbjct: 121 RKSIMELSGRTENNRVVNFEGTPDMIGKFVDVEITDVYPNSLRGKVV 167


>gi|160889557|ref|ZP_02070560.1| hypothetical protein BACUNI_01981 [Bacteroides uniformis ATCC 8492]
 gi|156861074|gb|EDO54505.1| hypothetical protein BACUNI_01981 [Bacteroides uniformis ATCC 8492]
          Length = 432

 Score =  127 bits (318), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 113/448 (25%), Positives = 204/448 (45%), Gaps = 35/448 (7%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEKVYSFLGRIR 88
           + GC  N+ DS  +       G+   +  +     + V+NTC     A E+  + +    
Sbjct: 10  TLGCSKNLVDSEHLMRQLEEVGFHVTHDAERPKGQIAVINTCGFIGDAKEESINMI---- 65

Query: 89  NLKNSRIKEGGDL-LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147
            L+ ++ KE G+L  + V GC+++   +E+    P V+   G   +  L + L +A    
Sbjct: 66  -LEFAQAKEEGNLEKLYVMGCLSERYLKELAVEIPQVDKFYGKFNWRELLQDLGKA---- 120

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
                 Y  E   ER       Y       A+L I EGCD+ C++C +P   G  +SR +
Sbjct: 121 ------YHDELHIERTLTTPKHY-------AYLKISEGCDRKCSYCAIPIITGRHVSRPM 167

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYT 266
            +++DE + L+  GV E  ++ Q +  +   G+D  +K    +L+  +S+I G+  +R  
Sbjct: 168 EEILDEVKYLVARGVKEFQVIAQELTYY---GVDLYKKQMLPELVERISDIPGVEWIRLH 224

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
            ++P      L +   + D +  Y+ + +Q  SD +L+ M R  T  E  ++I++ R   
Sbjct: 225 YAYPAHFPADLFRVMRERDNVCKYMDIALQHISDNMLQKMRRHVTKDETYKLIEQFREEV 284

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE-QVDEN 385
           P I + +  +VG PGET+ DF    + V K+ + +  +F YS   GT  +   E  + + 
Sbjct: 285 PGIHLRTTLMVGHPGETEADFEELKEFVRKVRFDRMGAFAYSEEEGTYAAAEYEDSIPQE 344

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPWLQSVVL--- 440
           VK  RL  L    +      +   VG+ ++V+I++   E   G+    SP +   VL   
Sbjct: 345 VKQARLDELMSIQQGISGELSAEKVGRQMKVIIDRLEGEYYIGRTEFDSPEVDPEVLIER 404

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
             +  +IG+   V I       L+G ++
Sbjct: 405 GDRALHIGNFYHVEIVKSDDFDLFGRII 432


>gi|253568256|ref|ZP_04845667.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|251842329|gb|EES70409.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 306

 Score =  127 bits (318), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 86/300 (28%), Positives = 153/300 (51%), Gaps = 14/300 (4%)

Query: 178 AFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG 237
           A+L I EGCD+ C++C +P   G  IS+S+ +++DE R L+  GV E  ++ Q +  +  
Sbjct: 8   AYLKISEGCDRKCSYCAIPIITGRHISKSMEEILDEVRYLVSQGVKEFQVIAQELTYY-- 65

Query: 238 KGLD-GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQ 296
            G+D  +K    +L+  +SEI G+  +R   ++P      L +   + D +  Y+ + +Q
Sbjct: 66  -GVDLYKKQMLPELIERISEIPGVEWIRLHYAYPAHFPTDLFRVMRERDNVCKYMDIALQ 124

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
             SD +LK M R+ +  +  ++I++ R   P I + +  +VG PGET++DF    + V K
Sbjct: 125 HISDNMLKLMRRQVSKEDTYKLIEQFRKEVPGIHLRTTLMVGHPGETEEDFEELKEFVRK 184

Query: 357 IGYAQAFSFKYSPRLGTPGSNMLE-QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIE 415
             + +  +F YS   GT  +   E  + + VK  RL  L    +      + A +GQ ++
Sbjct: 185 ARFDRMGAFAYSEEEGTYAAQQYEDSIPQEVKQARLDELMDIQQGISAELSAAKIGQQMK 244

Query: 416 VLIEKHGKEKGKLVGR----SPWLQSVVLNS---KNHNIGDIIKVRITDVKISTLYGELV 468
           V+I++   E    +GR    SP +   VL S   +   +G   +V +TD     LY +++
Sbjct: 245 VIIDR--IEGDYYIGRTEFDSPEVDPEVLISVSREELEVGQFYQVEVTDADDFDLYAKIL 302


>gi|167763123|ref|ZP_02435250.1| hypothetical protein BACSTE_01492 [Bacteroides stercoris ATCC
           43183]
 gi|167699463|gb|EDS16042.1| hypothetical protein BACSTE_01492 [Bacteroides stercoris ATCC
           43183]
          Length = 432

 Score =  126 bits (317), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 113/450 (25%), Positives = 204/450 (45%), Gaps = 39/450 (8%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEKVYSFLGRIR 88
           + GC  N+ DS  +       G+   +  +    ++ V+NTC     A E+  + +    
Sbjct: 10  TLGCSKNLVDSEHLMRQLEEAGFHVTHDAERPKGEIAVINTCGFIGDAKEESINMI---- 65

Query: 89  NLKNSRIKEGGDL-LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147
            L+ ++ KE G+L  + V GC+++   +E+    P V+   G   +  L + L +A    
Sbjct: 66  -LEFAQAKEEGELEKLYVMGCLSERYLKELAIEIPQVDKFYGKFNWKELLQDLGKA---- 120

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
                 Y  E   ER       Y       A+L I EGCD+ C++C +P   G  +SR +
Sbjct: 121 ------YHDELHIERTLTTPQHY-------AYLKISEGCDRKCSYCAIPIITGRHVSRPM 167

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYT 266
            +++DE + L+  GV E  ++ Q +  +   G+D  ++     L+  +SEI G+  +R  
Sbjct: 168 EEILDEVKYLVARGVKEFQVIAQELTYY---GVDLYKRQMLPQLIEKISEIPGVEWIRLH 224

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
            ++P      L +   +   +  Y+ + +Q  SD +L+ M R  T  +  ++I++ R   
Sbjct: 225 YAYPAHFPMDLFRVMRERPNVCKYMDIALQHISDNMLEKMRRHVTKEDTYRLIEKFREEV 284

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE-QVDEN 385
           P I + +  +VG PGET+ DF    + V K+ + +  +F YS   GT  +   E  + + 
Sbjct: 285 PGIHLRTTLMVGHPGETEADFEELKEFVRKVRFDRMGAFAYSEEEGTYAAAHYEDSIPQE 344

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVVL- 440
           VK  RL  L    +      + A VG+ + V+I++   E    +GR    SP +   VL 
Sbjct: 345 VKQARLDELMSIQQGISAELSAAKVGRQMRVIIDR--LEGDYYIGRTEFDSPEVDPEVLI 402

Query: 441 --NSKNHNIGDIIKVRITDVKISTLYGELV 468
               +   IG   +V I +     L+G ++
Sbjct: 403 ECGDEPLEIGGFYQVEIINSDDFDLFGRII 432


>gi|157146515|ref|YP_001453834.1| hypothetical protein CKO_02276 [Citrobacter koseri ATCC BAA-895]
 gi|157083720|gb|ABV13398.1| hypothetical protein CKO_02276 [Citrobacter koseri ATCC BAA-895]
          Length = 280

 Score =  126 bits (317), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 91/285 (31%), Positives = 150/285 (52%), Gaps = 21/285 (7%)

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDL 250
           RG  +SR + +V+ EA++L+D GV EI ++ Q+ +A+      R    +GE  K +  DL
Sbjct: 2   RGDLVSRPIGEVLSEAKRLVDAGVKEILVISQDTSAYGVDVKHRTGFHNGEPVKTSMVDL 61

Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
              LS++    RL Y   +P       + A G +   +PYL +P+Q  S RILK M R  
Sbjct: 62  CEQLSKLGIWTRLHYVYPYPHVDDVIPLMAEGKI---LPYLDIPLQHASPRILKLMKRPG 118

Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370
                   I + R + P++ + S FIVGFPGET+DDF+  +D + +    +   FKYSP 
Sbjct: 119 AVDRQLARIKQWREICPELTLRSTFIVGFPGETEDDFQMLLDFLKEARLDRVGCFKYSPV 178

Query: 371 LGTPGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-- 425
            G   + + +QV E VK E   R + LQ+++  +++      VG+ I V+I++  KE   
Sbjct: 179 EGAGANALPDQVPEEVKEERWNRFMQLQQQISAERLQEK---VGREILVIIDEVDKEGAI 235

Query: 426 GKLVGRSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468
           G+ +  +P +   V  +   N+  GD+I+V++ +     L+G  V
Sbjct: 236 GRSMADAPEIDGAVYLNGETNVKPGDVIRVKVDNADEYDLWGSRV 280


>gi|329954832|ref|ZP_08295849.1| ribosomal protein S12 methylthiotransferase RimO [Bacteroides
           clarus YIT 12056]
 gi|328526936|gb|EGF53947.1| ribosomal protein S12 methylthiotransferase RimO [Bacteroides
           clarus YIT 12056]
          Length = 432

 Score =  126 bits (317), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 117/450 (26%), Positives = 203/450 (45%), Gaps = 39/450 (8%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEKVYSFLGRIR 88
           + GC  N+ DS  +       G+   +  +     + V+NTC     A E+  + +    
Sbjct: 10  TLGCSKNLVDSEHLMRQLEEAGFHVTHDAERPKGQIAVINTCGFIGDAKEESINMI---- 65

Query: 89  NLKNSRIKEGGDL-LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147
            L+ ++ KE G L  + V GC+++   +E+    P V+   G   +  L + L +A    
Sbjct: 66  -LEFAQAKEEGSLEKLYVMGCLSERYLKELAIEIPQVDKFYGKFNWKELLQDLGKA---- 120

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
                 Y  E   ER       Y       A+L I EGCD+ C++C +P   G  ISR +
Sbjct: 121 ------YHDELHIERTLTTPRHY-------AYLKISEGCDRKCSYCAIPIITGRHISRPM 167

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYT 266
            +++DE + L+  GV E  ++ Q +  +   G+D  +K    +L+  +SEI G+  +R  
Sbjct: 168 EEILDEVKYLVARGVKEFQVIAQELTYY---GVDLYKKQMLPELIERISEIPGVEWIRLH 224

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
            ++P      L +   +   +  Y+ + +Q  SD +L  M R  T  E  ++I++ R   
Sbjct: 225 YAYPAHFPMDLFRVMRERPNVCKYMDIALQHISDNMLDKMRRHVTKEETYRLIEKFREEV 284

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV-DEN 385
           P I + +  +VG PGET+ DF    + V K+ + +  +F YS    T  +   E V  + 
Sbjct: 285 PGIHLRTTLMVGHPGETEADFEELKEFVRKVRFDRMGAFAYSEEERTYAAAHYEDVIPQE 344

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVVL- 440
           VK  RL  L    +      + A VG+ ++V+I++   E    +GR    SP +   VL 
Sbjct: 345 VKQARLDELMSIQQGISAELSAAKVGKRMDVIIDR--LEGDYYIGRTEFDSPEVDPEVLI 402

Query: 441 --NSKNHNIGDIIKVRITDVKISTLYGELV 468
               K   IG+  +V I +     L+G ++
Sbjct: 403 ECGDKVLEIGNFYRVEIINSDDFDLFGRVL 432


>gi|194335608|ref|YP_002017402.1| MiaB-like tRNA modifying enzyme [Pelodictyon phaeoclathratiforme
           BU-1]
 gi|194308085|gb|ACF42785.1| MiaB-like tRNA modifying enzyme [Pelodictyon phaeoclathratiforme
           BU-1]
          Length = 453

 Score =  126 bits (316), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 109/409 (26%), Positives = 195/409 (47%), Gaps = 45/409 (11%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N  ++  + D    +G+   +  + ADLI+++TC + ++A +K    +  I+  
Sbjct: 13  TLGCKLNYAETSTILDQLSKKGWLLSSIGERADLIIIHTCAVTKQAEQKCRQKIRAIKR- 71

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPI--VNVVVGPQTYYRLPELLERARFGKR 148
           KN   K      + V GC +Q   E +   S I  ++ ++G    + +       R+   
Sbjct: 72  KNPSSK------IAVIGCYSQFNPEAL---SAIDGIDAILGSNDKFDI------KRYEDI 116

Query: 149 VVDTDYSVEDKFERLSIVD---GGYNRKRGVT-----AFLTIQEGCDKFCTFCVVPYTRG 200
           ++ T+ S   +    + ++    GY+     +     AFL IQ+GCD  C++C +P  RG
Sbjct: 117 LLGTEPSPLVRVTPANTIEKVYPGYSLPAAASCERTRAFLKIQDGCDNGCSYCAIPLIRG 176

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
              S   + +V+ A  L  +G  EI L G N   +R  GL        +LL  L E+  +
Sbjct: 177 GSRSLPAAHIVERAHLLASSGYREIVLTGVNTGDYRSGGLK-----LKELLRMLEEVS-I 230

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR-QII 319
            R+R ++  P  +   LI        ++P+ H+P+QSGSDRIL++M R +    YR +++
Sbjct: 231 SRIRISSIEPDIVDRELIALVAGSKKIVPHFHIPLQSGSDRILRAMRRHYDTALYRDRVL 290

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
             + ++  D AI +D +VG+PGET++DF      ++++  A    F  S R   PG+ + 
Sbjct: 291 MSVENI-ADCAIGADVMVGYPGETEEDFLKMYHFIEELPLASLHVFSCSIR---PGTRLA 346

Query: 380 EQVDENVK--------AERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
            Q+  + +        A R   L +  R  +  F     G+   VLIE+
Sbjct: 347 LQITNSERKPVESAEIARRYSELAELGRRHEARFKARYTGKECMVLIER 395


>gi|256379799|ref|YP_003103459.1| MiaB-like tRNA modifying enzyme YliG [Actinosynnema mirum DSM
           43827]
 gi|255924102|gb|ACU39613.1| MiaB-like tRNA modifying enzyme YliG [Actinosynnema mirum DSM
           43827]
          Length = 469

 Score =  126 bits (316), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 124/462 (26%), Positives = 209/462 (45%), Gaps = 49/462 (10%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA-EKVYSF 83
           +R  + + GC  N  DS  +     + G++ V+    AD++V+NTC   E A  + V + 
Sbjct: 8   KRVAMLTLGCARNEVDSEELAGRLTAGGWQLVDDE--ADVVVVNTCGFVESAKKDSVDTL 65

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           L       +S  K      VV  GC+A+  G E+    P  N V+G   Y  L + L+  
Sbjct: 66  LA----ASDSGAK------VVAVGCMAERYGAELAESLPEANAVLGFDHYGDLADRLDDV 115

Query: 144 RFGK-----RVVD-------TDYSVEDKFERLSIVDGGYN----RKR---GVTAFLTIQE 184
             GK     + VD       T    ++K + + +   G+     R R      A L I  
Sbjct: 116 LAGKALESHKPVDRRTLLPITPVKRQEKAQEVQVPGHGWGPRVLRTRLDDAPVAPLKIAS 175

Query: 185 GCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK 244
           GCD+ C+FC +P  RG  +SR   ++V EA  L + GV E+ L+ +N  ++  K L  E 
Sbjct: 176 GCDRRCSFCAIPSFRGAFVSRHPDEIVAEAMWLAEQGVRELFLVSENSTSY-AKDLPREL 234

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304
                LL  L+ I+G+ R+R +   P +    L+KA      +  Y  +  Q  S+ +L+
Sbjct: 235 GALEQLLPRLAGIEGVDRVRVSYLQPAETKPSLVKAIATTPGVADYFDMSFQHSSEAVLR 294

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA-----TMDLVDKIGY 359
            M R  +   +  ++ +IR + P   I S+FIVGFPGET+ D        T   +D +G 
Sbjct: 295 RMRRFGSTESFLALVAQIRELAPQAGIRSNFIVGFPGETEADVAELERFLTEARLDAVGI 354

Query: 360 AQAFSFKYSPRLGTPGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEV 416
                F YS   GT    + ++ D +  AE   R+  L ++L  Q+          ++  
Sbjct: 355 -----FGYSDEDGTEAEGLGDKHDADTVAERVSRISALVEELTAQRAEDRVGEEVVVLVE 409

Query: 417 LIEKHGKE-KGKLVGRSPWL--QSVVLNSKNHNIGDIIKVRI 455
             E    +  G+   ++P +  + V+ N+   ++GD+++ R+
Sbjct: 410 HEEDDETDCTGRAAHQAPEVDGECVITNADGLSVGDLVRCRV 451


>gi|257791372|ref|YP_003181978.1| MiaB-like tRNA modifying enzyme YliG [Eggerthella lenta DSM 2243]
 gi|257475269|gb|ACV55589.1| MiaB-like tRNA modifying enzyme YliG [Eggerthella lenta DSM 2243]
          Length = 455

 Score =  126 bits (316), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 123/464 (26%), Positives = 205/464 (44%), Gaps = 37/464 (7%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + P   FV + GC  N  D+ RM       G+   +   +AD +V+NTC   + A E+  
Sbjct: 10  VAPCVAFV-TLGCAKNEADTARMRVRLAEAGFLIEDDPAEADAVVVNTCSFIQSATEESI 68

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             +     + N  +  G  L  +VAGC+    GE++       + +V  + +       +
Sbjct: 69  EAVFDAAGMPN--VAAGAPL--IVAGCMPARYGEDL------ADELVEARAFVPCSREDD 118

Query: 142 RARFGKRVVDTDYSVEDKFERLSI-VDGGYNRKRG-----------VTAFLTIQEGCDKF 189
            A      +  D         +++   GG     G             A++ I +GCD+F
Sbjct: 119 IAAIVADALGVDAPGGGAAASVTLSASGGAAEVEGSRAALAALPAAPFAYVKISDGCDRF 178

Query: 190 CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSD 249
           CT+C +PY RG   S  L  V  +    +  G  EI L+ Q+   W G   D E  + + 
Sbjct: 179 CTYCTIPYIRGRYRSFPLDDVRADVAAQVAAGAREIVLIAQDTGRW-GADFD-EPSSLAA 236

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
           L+ +L+E       R     P  +SD L+ A    D +  Y  +P+Q     IL++MNR 
Sbjct: 237 LVAALAEEFPQTWFRIMYIQPEGLSDELLDAVAAHDNVCDYFDIPLQHVDAGILRAMNRT 296

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369
            +  E+  ++DR+ +  P   + +  I GFPGET++ F      V++  +     F YS 
Sbjct: 297 GSREEFLALVDRVLAHVPGATLRTTLIAGFPGETEEQFEDLCSFVEEGLFDYVGVFPYSR 356

Query: 370 RLGTPGSNMLEQVDE---NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG 426
             GT   ++  Q+DE   N +A+RL  L   +   +++   A VG+ ++VL+E   +E G
Sbjct: 357 EEGTRAFDLPGQLDEDEKNDRAQRLRDLADAVCCPRIA---ARVGREMDVLVEGV-EEDG 412

Query: 427 KLVGR----SPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGE 466
           +L GR    +P +  V         G+I +VRI D  +  + GE
Sbjct: 413 QLFGRAMCQAPEVDGVTYLDAGEP-GEIRRVRIVDALLYEMEGE 455


>gi|312195010|ref|YP_004015071.1| MiaB-like tRNA modifying enzyme YliG [Frankia sp. EuI1c]
 gi|311226346|gb|ADP79201.1| MiaB-like tRNA modifying enzyme YliG [Frankia sp. EuI1c]
          Length = 510

 Score =  125 bits (315), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 109/421 (25%), Positives = 177/421 (42%), Gaps = 27/421 (6%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
            R  + + GC  N  DS  +     + G+  V+   DAD +++NTC   + A +     L
Sbjct: 7   HRVALVTLGCSRNEVDSEELAARLAAGGFRLVDDAADADAVLVNTCGFVDVAKKDSIDAL 66

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
                L+       G   VV  GC+A+  G E+    P  + ++G   Y  + + L    
Sbjct: 67  LAADGLRGGGGSGPGPQAVVAVGCLAERYGAELAESLPEADAILGFDAYPDIADRLSAVL 126

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYN----------------------RKR---GVTAF 179
            G R              +S VD G                        R+R   G  A 
Sbjct: 127 AGNRPAAHVPRDRRSLLPISPVDRGAAAAGVVVPGHGTHAPTSVGAAVVRRRLDDGPVAA 186

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
           L I  GCD+ C+FC +P  RG  +SR    ++ EA  L   G  E+ L+ +N  ++ GK 
Sbjct: 187 LKISSGCDRRCSFCAIPSFRGSHVSRPPQDILAEAEWLAGQGARELVLVSENSTSY-GKD 245

Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
           L G+      LL  L+   G+VR+R     P +    L++       + PYL L  Q  S
Sbjct: 246 L-GDLRALEKLLPQLAATPGIVRVRTVYLQPAETRPTLLEVLLTTPGVAPYLDLSFQHAS 304

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
             +L+ M R   + ++  ++ R R+  P +   S+FIVGFPGET +D     D +++   
Sbjct: 305 PAVLRRMRRFGGSADFLDLLRRGRAFAPALGARSNFIVGFPGETPEDLDILADFLEQAEL 364

Query: 360 AQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419
                F YS   GT    +  ++ E    +R   +   + +   +  +  VG+ +EVL+E
Sbjct: 365 DAIGIFGYSDEDGTEAVGLPGKLSEAEIEDRRARIADLVEQLTAARAERRVGETVEVLVE 424

Query: 420 K 420
           +
Sbjct: 425 E 425


>gi|223038823|ref|ZP_03609115.1| 2-methylthioadenine synthetase [Campylobacter rectus RM3267]
 gi|222879796|gb|EEF14885.1| 2-methylthioadenine synthetase [Campylobacter rectus RM3267]
          Length = 420

 Score =  125 bits (315), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 97/351 (27%), Positives = 176/351 (50%), Gaps = 24/351 (6%)

Query: 51  QGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVA 110
           Q YE    +  AD+I++NTC     A E+    +  I ++  +R K  G LLVV  GC+ 
Sbjct: 11  QNYEITPEVARADVIIVNTCGFINSAKEES---IRAILDMHEARKK--GSLLVVT-GCLM 64

Query: 111 QAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGY 170
           Q   EE+++  P V++  G   Y ++ E++ + +    +   D  ++   ER+ I    Y
Sbjct: 65  QRYREELMKELPEVDLFTGVGDYDKIDEIILKKQ---NLFSPDTYLQANEERV-ITGSNY 120

Query: 171 NRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQ 230
           +      A++ I EGC++ C+FC +P  +G   SRSL  +V E +KL+  G  + + L Q
Sbjct: 121 H------AYIKISEGCNQKCSFCAIPTFKGKLKSRSLENIVGEVQKLVKKGYYDFSFLSQ 174

Query: 231 NVNAW-RGKGL-DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLM 288
           + +++ R   + DG       L+ ++ +I+G+   R    +P   S+ LI+      V  
Sbjct: 175 DSSSYMRDHAVSDG----LISLIDAVEKIEGVKTARILYLYPSTTSNALIERIIASPVFA 230

Query: 289 PYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFR 348
            Y  +P+Q  SD++LK M R   A   +++++ ++   P+  + +  IVG PGE++ +F 
Sbjct: 231 NYFDMPIQHASDKMLKIMRRGSGAARIKELLNLMKKA-PNAFLRTGVIVGHPGESEAEFD 289

Query: 349 ATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLR 399
                + +  + +  +F YS    T    M EQV   + ++RL  ++K  R
Sbjct: 290 ELCAFLQEFKFDRVSAFAYSKEEDTLSYEM-EQVPAKIISKRLSKIEKITR 339


>gi|213029627|ref|ZP_03344074.1| hypothetical protein Salmonelentericaenterica_48731 [Salmonella
           enterica subsp. enterica serovar Typhi str. 404ty]
          Length = 249

 Score =  125 bits (315), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 73/204 (35%), Positives = 111/204 (54%), Gaps = 11/204 (5%)

Query: 178 AFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-- 235
           A+L I EGC+  CTFC++P  RG  +SR +  V+ EA++L+D GV EI ++ Q+ +A+  
Sbjct: 48  AYLKISEGCNHRCTFCIIPSMRGDLVSRPIGDVLSEAKRLVDAGVKEILVISQDTSAYGV 107

Query: 236 ----RGKGLDGE--KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMP 289
               R    +GE  K +   L   LS++    RL Y   +P       + A G +   +P
Sbjct: 108 DVKHRTGFHNGEPMKTSMVSLCEQLSKLGVWTRLHYVYPYPHVDDVIPLMAEGKI---LP 164

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           YL +P+Q  S RILK M R  +       I + R + P++ + S FIVGFPGET++DF+ 
Sbjct: 165 YLDIPLQHASPRILKLMKRPGSVDRQLARIKQWREICPELTLRSTFIVGFPGETEEDFQM 224

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGT 373
            +D + +    +   FKYSP  G 
Sbjct: 225 LLDFLKEARLDRVGCFKYSPVEGA 248


>gi|315502559|ref|YP_004081446.1| miab-like tRNA modifying enzyme ylig [Micromonospora sp. L5]
 gi|315409178|gb|ADU07295.1| MiaB-like tRNA modifying enzyme YliG [Micromonospora sp. L5]
          Length = 500

 Score =  125 bits (315), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 116/457 (25%), Positives = 189/457 (41%), Gaps = 73/457 (15%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +R  + + GC  N  DS  +     + G++     + AD++V+NTC   EKA +     L
Sbjct: 14  RRVALLTLGCARNEVDSEELAARLHADGWQVTTDGEGADVVVVNTCGFVEKAKQDSIQTL 73

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG----PQTYYRLPELL 140
               +             VV AGC+A+  G E+    P    V+     P    RL  +L
Sbjct: 74  LAAADTGAK---------VVAAGCMAERYGRELADSLPEAQAVLSFDDYPDIAARLDSVL 124

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIV-----DGGYN------------------------ 171
                G       ++  D+ E L +      D   +                        
Sbjct: 125 AGEAIGA------HTPRDRRELLPLTPVKRRDAAVSLPGHGTPARVAPETDAHTPAHLRQ 178

Query: 172 --RKR---GVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEIT 226
             R R   G  A L +  GCD+ C FC +P  RG  +SR+  +++ EA  L   GV E+ 
Sbjct: 179 VLRHRLDTGPVASLKLASGCDRRCAFCAIPAFRGAFVSRTPDELLAEAEWLAKTGVRELV 238

Query: 227 LLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV 286
           L+ +N  ++ GK L G+      LL  L+ I G+VR+R +   P +    L++       
Sbjct: 239 LVSENSTSY-GKDL-GDPRALEKLLPQLAAIDGIVRVRASYLQPAETRPGLVEVIATTPG 296

Query: 287 LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDD 346
           +  Y  L  Q  S+ +L+ M R  +   + +++   R++ PD    S+FIVGFPGET  D
Sbjct: 297 VAAYFDLSFQHSSEPVLRRMRRFGSTDRFLELLASARALAPDAGARSNFIVGFPGETKQD 356

Query: 347 FRA-----TMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV---KAERLLCLQKKL 398
                   T   +D IG      F YS   GT  + +  +V       + ++L  L  +L
Sbjct: 357 VAELVRFLTEARLDAIGM-----FDYSDEDGTEAAGLTGKVSAATIKRRYDKLSALADEL 411

Query: 399 REQQVSFNDACVGQIIEVLIEK--HGKEKGKLVGRSP 433
             Q+       +G  +EVL++    G  +G+   ++P
Sbjct: 412 CSQRAEER---LGATVEVLVDSTADGVVEGRAAHQAP 445


>gi|46203668|ref|ZP_00051189.2| COG0621: 2-methylthioadenine synthetase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 359

 Score =  125 bits (314), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 100/330 (30%), Positives = 149/330 (45%), Gaps = 38/330 (11%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
            P+  FV S GC   + DS R+     ++GYE     D AD++++NTC   + A  +   
Sbjct: 15  APRISFV-SLGCPKALVDSERILTHLRAEGYELARRHDGADVVIVNTCGFLDSAKAESLQ 73

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +G         + E G   V+V GC+  A+ EEI  + P +  V GPQ Y    E +  
Sbjct: 74  AIG-------DAMAENGR--VIVTGCMG-AQPEEIREKYPNLLAVTGPQAY----ESVVA 119

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           A     V +      D F  L I   G        A+L I EGC+  CTFC++P  RG  
Sbjct: 120 A-----VHEAVPPAHDPFLDL-IPPQGVKLTPRHYAYLKISEGCNNRCTFCIIPSLRGDL 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLL 251
           +SR  + V+ EA KL+  GV E+ ++ Q+ +A           WR + +   +  F DL 
Sbjct: 174 VSRPAADVLREAEKLVKAGVKELLVVSQDTSAYGIDTRYAPSLWRDREV---RARFYDLA 230

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
             L ++   VR+ Y   +P       + A G    ++PYL +P+Q  S  +LK M R   
Sbjct: 231 KELGDLGAWVRMHYVYPYPHVDEVIPLMAEGK---ILPYLDMPLQHASPSVLKRMRRPGN 287

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPG 341
             +    I R R + PD+A   D    FP 
Sbjct: 288 QEKQLDRIRRWREICPDLAPPLDLHRRFPA 317


>gi|167042354|gb|ABZ07082.1| putative Radical SAM superfamily protein [uncultured marine
           crenarchaeote HF4000_ANIW97M7]
          Length = 422

 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 115/450 (25%), Positives = 210/450 (46%), Gaps = 38/450 (8%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + +V++YGC  +  DS  +  +  + G+  V    ++DL ++ TC +++  A ++     
Sbjct: 3   KIWVEAYGCSSSFADSEMISGLIVNGGHTLVQDQSESDLNLIVTCSVKDVTATRMVH--- 59

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                   RIK+     +VVAGC+ +AE   + + +   +++ GP +  +  +++E    
Sbjct: 60  --------RIKQSQSKPLVVAGCLPKAERHTVEKFAQNASMM-GPNSIGKTLQVIEATLN 110

Query: 146 GKRVV---DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           G +VV   DTD S      ++ I     N   G+   + I  GC   CTFC     +G  
Sbjct: 111 GSKVVALDDTDLS------KVGIPKIRLNPAVGI---VEIANGCMSECTFCQTKLAKGDL 161

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLV 261
            S  +  +V + ++ + +G  EI L   +   +   GLD GE    S L+  +S+I    
Sbjct: 162 NSYRIGDIVRQVKRELADGCKEIWLSSTDNGCY---GLDIGED--LSSLIEQVSQIPEDF 216

Query: 262 RLRYTTSHPRDMS---DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           ++R    +P  M    D L+K+  +  V   +LH+PVQSGS+ +L +M R HT   ++ +
Sbjct: 217 KIRVGMMNPMFMPRIRDNLLKSFENNKVFR-FLHVPVQSGSNDVLNNMKRGHTVETFKDV 275

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           + + R+      IS+D I+G+P ET ++F  T+ L+ +         +YS R GT  + M
Sbjct: 276 VRKFRTKFGPFTISTDIIIGYPTETQENFEETIALLKETRPDIVNLSRYSQRPGTVAAEM 335

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSV 438
             Q+D      R   + +      +  N   +G    VL +++    G++ GR+   + +
Sbjct: 336 -PQIDVAEVKRRSKQVTELNNNISLENNRKWIGWKGNVLFDEN--LDGQVKGRNFAYKPI 392

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            +N     IG    VR+      +L GE+ 
Sbjct: 393 FVNEITE-IGQTCTVRVVGATNHSLIGEIA 421


>gi|302865999|ref|YP_003834636.1| MiaB-like tRNA modifying enzyme YliG [Micromonospora aurantiaca
           ATCC 27029]
 gi|302568858|gb|ADL45060.1| MiaB-like tRNA modifying enzyme YliG [Micromonospora aurantiaca
           ATCC 27029]
          Length = 500

 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 116/457 (25%), Positives = 189/457 (41%), Gaps = 73/457 (15%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +R  + + GC  N  DS  +     + G++     + AD++V+NTC   EKA +     L
Sbjct: 14  RRVALLTLGCARNEVDSEELAARLNADGWQVTTDGEGADVVVVNTCGFVEKAKQDSIQTL 73

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG----PQTYYRLPELL 140
               +             VV AGC+A+  G E+    P    V+     P    RL  +L
Sbjct: 74  LAAADTGAK---------VVAAGCMAERYGRELADSLPEAQAVLSFDDYPDIAARLDSVL 124

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIV-----DGGYN------------------------ 171
                G       ++  D+ E L +      D   +                        
Sbjct: 125 AGEAIGA------HTPRDRRELLPLTPVKRRDAAVSLPGHGTPARVAPETDAHTPAHLRQ 178

Query: 172 --RKR---GVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEIT 226
             R R   G  A L +  GCD+ C FC +P  RG  +SR+  +++ EA  L   GV E+ 
Sbjct: 179 VLRHRLDTGPVASLKLASGCDRRCAFCAIPAFRGAFVSRTPDELLAEAEWLAKTGVRELV 238

Query: 227 LLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV 286
           L+ +N  ++ GK L G+      LL  L+ I G+VR+R +   P +    L++       
Sbjct: 239 LVSENSTSY-GKDL-GDPRALEKLLPQLAAIDGIVRVRASYLQPAETRPGLVEVIATTPG 296

Query: 287 LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDD 346
           +  Y  L  Q  S+ +L+ M R  +   + +++   R++ PD    S+FIVGFPGET  D
Sbjct: 297 VAAYFDLSFQHSSEPVLRRMRRFGSTDRFLELLASARALAPDAGARSNFIVGFPGETKQD 356

Query: 347 FRA-----TMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV---KAERLLCLQKKL 398
                   T   +D IG      F YS   GT  + +  +V       + ++L  L  +L
Sbjct: 357 VAELVRFLTEARLDAIGM-----FDYSDEDGTEAAGLTGKVSAATIKRRYDKLSALADEL 411

Query: 399 REQQVSFNDACVGQIIEVLIEK--HGKEKGKLVGRSP 433
             Q+       +G  +EVL++    G  +G+   ++P
Sbjct: 412 CSQRAEER---LGATVEVLVDSTADGVVEGRAAHQAP 445


>gi|317490514|ref|ZP_07948992.1| MiaB-like tRNA modifying enzyme YliG [Eggerthella sp. 1_3_56FAA]
 gi|316910365|gb|EFV31996.1| MiaB-like tRNA modifying enzyme YliG [Eggerthella sp. 1_3_56FAA]
          Length = 455

 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 123/464 (26%), Positives = 204/464 (43%), Gaps = 37/464 (7%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + P   FV + GC  N  D+ RM       G+   +   +AD +V+NTC   + A E+  
Sbjct: 10  VAPCVAFV-TLGCAKNEADTARMRVRLAEAGFLIEDDPAEADAVVVNTCSFIQSATEESI 68

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             +     + N  +  G  L  +VAGC+    GEE+       + +V  + +       +
Sbjct: 69  EAVFDAAGMPN--VAAGAPL--IVAGCMPARYGEEL------ADELVEARAFVPCSREDD 118

Query: 142 RARFGKRVVDTDYSVEDKFERLSI-VDGGYNRKRG-----------VTAFLTIQEGCDKF 189
            A      +  D         +++   GG     G             A++ I +GCD+F
Sbjct: 119 IAAIVADALGVDAPGGGAAASVTLSASGGAAEVEGSRAALAALPAAPFAYVKISDGCDRF 178

Query: 190 CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSD 249
           CT+C +PY RG   S  L  V  +    +  G  EI L+ Q+   W G   D E  + + 
Sbjct: 179 CTYCTIPYIRGRYRSFPLDDVRADVAAQVAAGAREIVLIAQDTGRW-GADFD-EPSSLAA 236

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
           L+ +L+E       R     P  +SD L+ A    D +  Y  +P+Q     IL++MNR 
Sbjct: 237 LVAALAEEFPQTWFRIMYIQPEGLSDELLDAVAAHDNVCDYFDIPLQHVDAGILRAMNRT 296

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369
            +  E+  ++ R+ +  P   + +  I GFPGET++ F      V++  +     F YS 
Sbjct: 297 GSREEFLALVGRVLAHVPGATLRTTLIAGFPGETEEQFEDLCSFVEEGLFDYVGVFPYSR 356

Query: 370 RLGTPGSNMLEQVDE---NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG 426
             GT   ++  Q+DE   N +A+RL  L   +   +++   A VG+ ++VL+E   +E G
Sbjct: 357 EEGTRAFDLPGQLDEDEKNDRAQRLRDLADAVCCPRIA---ARVGREMDVLVEGV-EEDG 412

Query: 427 KLVGR----SPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGE 466
           +L GR    +P +  V         G+I +VRI D  +  + GE
Sbjct: 413 QLFGRAMCQAPEVDGVTYLDAGEP-GEIRRVRIVDALLYEMEGE 455


>gi|289675771|ref|ZP_06496661.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Pseudomonas
           syringae pv. syringae FF5]
          Length = 171

 Score =  124 bits (312), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 68/170 (40%), Positives = 99/170 (58%), Gaps = 2/170 (1%)

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
           R L +M R HT  EY+  + ++R+  P I+ISSDFIVGFPGET+ DF  TM L++ +G+ 
Sbjct: 1   RSLAAMKRNHTTLEYKSRLRKLRAAVPGISISSDFIVGFPGETEKDFDNTMKLIEDVGFD 60

Query: 361 QAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
            +FSF YSPR GTP +++ +   E +K ERL  LQ +L +Q    +   VG I  +L+  
Sbjct: 61  FSFSFVYSPRPGTPAADLKDDTPEALKKERLAALQHRLNQQGFEISRQMVGSIQRILVTD 120

Query: 421 HG-KEKGKLVGRSPWLQSVVLNSKNHN-IGDIIKVRITDVKISTLYGELV 468
           +  K+ G+L GR+   + V     N   IG    V I D +  +L G L+
Sbjct: 121 YSKKDPGELQGRTENNRIVNFRCDNPKLIGQFADVHIDDAQPHSLRGSLL 170


>gi|217031506|ref|ZP_03437011.1| hypothetical protein HPB128_21g64 [Helicobacter pylori B128]
 gi|216946706|gb|EEC25302.1| hypothetical protein HPB128_21g64 [Helicobacter pylori B128]
          Length = 398

 Score =  124 bits (312), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 97/349 (27%), Positives = 167/349 (47%), Gaps = 32/349 (9%)

Query: 61  DADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRR 120
           +AD+IV+N+C +   A   V S+  ++  L            V+  GC  + +G+E+  +
Sbjct: 16  EADIIVINSCTVTNGADSAVRSYAKKMVRLNKE---------VLFTGCGVKTQGKELFEK 66

Query: 121 SPIVNVVVGPQTYYRLPELL-ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAF 179
              +  V G     ++  LL E+ RF       D ++E+K    ++V     + R   AF
Sbjct: 67  G-FLKGVFGHDNKEKINALLQEKKRFF-----IDDNLENKHLDTTMVSEFVGKTR---AF 117

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW---R 236
           + IQEGCD  C +C++P  RG   S    +++++   L   GV E+ L G NV ++   R
Sbjct: 118 IKIQEGCDFDCNYCIIPSVRGRARSFEERKILEQVGLLCSKGVQEVVLTGTNVGSYGKDR 177

Query: 237 GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQ 296
           G  +       + L+  LS+I GL R+R  +  P  + +       + D L  +LH+ +Q
Sbjct: 178 GSNI-------ARLIKKLSQIAGLKRIRIGSLEPNQI-NDEFLELLEEDFLEKHLHIALQ 229

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
              D +L+ MNRR+     R+++++I S   + AI +DFIVG PGE++  F      ++ 
Sbjct: 230 HSHDFMLERMNRRNRTKSDRELLEKIAS--KNFAIGTDFIVGHPGESESVFEKAFKNLES 287

Query: 357 IGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSF 405
           +       F YS R  TP S M + V      +RL  ++  +  +  +F
Sbjct: 288 LPLTHIHPFIYSKRKDTPSSLMRDSVSLEDSKKRLNAIKDLILHKNKAF 336


>gi|261416782|ref|YP_003250465.1| Radical SAM domain protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261373238|gb|ACX75983.1| Radical SAM domain protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|302327266|gb|ADL26467.1| radical SAM domain protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 467

 Score =  124 bits (312), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 106/415 (25%), Positives = 179/415 (43%), Gaps = 29/415 (6%)

Query: 60  DDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILR 119
           +  +   LN C ++  A        G ++ L+ +     G + + + GC  +   EE LR
Sbjct: 71  EKPEAFYLNVCTVKGNA--------GAMKLLRKAASTFPG-VPIYITGCAPKDFREEALR 121

Query: 120 RSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYS-VEDKFERLSIVDGGYNRKRGVTA 178
             P V        +  L EL   A    +   +  S +  +    +       R+     
Sbjct: 122 TVPHVQ-------FTSLKELDASAILPTQSAQSPSSQINARTPDSNKASRNVLRESPFVG 174

Query: 179 FLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK 238
            + I+EGC   C FC     +G   S +   +VD+ + L+D+G  EI L GQ+   +   
Sbjct: 175 IVNIEEGCLDACAFCSTHLVKGRLHSFAPQTIVDQVQALVDDGCLEIQLTGQDCACY--- 231

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM---SDCLIKAHGDLDVLMPYLHLPV 295
           G D            L+ + G  R+R    +PR +    + L+    D D +  ++H+PV
Sbjct: 232 GFDIGTNLAELTQRILTHVNGNYRIRLGMGNPRHVLSYQEALLNCFTD-DRIYKFIHIPV 290

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
           QSGS+ +LK+MNRRHTA +Y  +            +S+D IVG+PGET  DF  T+ L+ 
Sbjct: 291 QSGSENVLKAMNRRHTARDYATLAHAFTERFRKFTLSTDLIVGYPGETAADFNDTLTLLK 350

Query: 356 KIGYAQAFSFKYSPRLGTPGSNML----EQVDENVKAERLLCLQKKLREQQVSFNDACVG 411
           +         ++  R GT  + +     + V +++K ER   L +  ++  +  N   +G
Sbjct: 351 ETRPTVCNITRFVTRPGTVAARLETASNQAVSDDIKHERSAILAEAFQQIALENNREWIG 410

Query: 412 QIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGE 466
               V+ EK G   G  + R+   + V L       G  ++VRIT+ +   L  E
Sbjct: 411 DECTVVTEKPGYRAGTTIARNEAYRPVALQG-TFPAGKTLRVRITEAEPFALLAE 464


>gi|325831383|ref|ZP_08164637.1| ribosomal protein S12 methylthiotransferase RimO [Eggerthella sp.
           HGA1]
 gi|325486637|gb|EGC89085.1| ribosomal protein S12 methylthiotransferase RimO [Eggerthella sp.
           HGA1]
          Length = 455

 Score =  124 bits (312), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 123/464 (26%), Positives = 204/464 (43%), Gaps = 37/464 (7%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + P   FV + GC  N  D+ RM       G+       +AD +V+NTC   + A E+  
Sbjct: 10  VAPCVAFV-TLGCAKNEADTARMRVRLAEAGFLIEVDPAEADAVVVNTCSFIQSATEESI 68

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             +     + N  +  G  L  +VAGC+    GE++       + +V  + +       +
Sbjct: 69  EAVFDAAGMPN--VAAGAPL--IVAGCMPARYGEDL------ADELVEARAFVPCSREDD 118

Query: 142 RARFGKRVVDTDYSVEDKFERLSI-VDGGYNRKRG-----------VTAFLTIQEGCDKF 189
            A      +  D         +++   GG     G             A++ I +GCD+F
Sbjct: 119 IAAIVADALGVDAPGGGAAASVTLSASGGAAEVEGSRAALAALPAAPFAYVKISDGCDRF 178

Query: 190 CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSD 249
           CT+C +PY RG   S  L  V  +    +  G  EI L+ Q+   W G   D E  + + 
Sbjct: 179 CTYCTIPYIRGRYRSFPLDDVRADVAAQVAAGAREIVLIAQDTGRW-GADFD-EPSSLAA 236

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
           L+ +L+E       R     P  +SD L+ A    D +  Y  +P+Q     IL++MNR 
Sbjct: 237 LVAALAEEFPQTWFRIMYIQPEGLSDELLDAVAAHDNVCDYFDIPLQHVDAGILRAMNRT 296

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369
            +  E+  ++DR+ +  P   + +  I GFPGET++ F      V++  +     F YS 
Sbjct: 297 GSREEFLALVDRVLAHVPGATLRTTLIAGFPGETEEQFEDLCSFVEEGLFDYVGVFPYSR 356

Query: 370 RLGTPGSNMLEQVDE---NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG 426
             GT   ++  Q+DE   N +A+RL  L   +   +++   A VG+ ++VL+E   +E G
Sbjct: 357 EEGTRAFDLPGQLDEDEKNDRAQRLRDLADAVCCPRIA---ARVGREMDVLVEGV-EEDG 412

Query: 427 KLVGR----SPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGE 466
           +L GR    +P +  V         G+I +VRI D  +  + GE
Sbjct: 413 QLFGRAMCQAPEVDGVTYLDAGEP-GEIRRVRIVDALLYEMEGE 455


>gi|159036993|ref|YP_001536246.1| MiaB-like tRNA modifying enzyme YliG [Salinispora arenicola
           CNS-205]
 gi|238066585|sp|A8M773|RIMO_SALAI RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|157915828|gb|ABV97255.1| MiaB-like tRNA modifying enzyme YliG [Salinispora arenicola
           CNS-205]
          Length = 507

 Score =  124 bits (311), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 119/497 (23%), Positives = 209/497 (42%), Gaps = 70/497 (14%)

Query: 13  MVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHI 72
           MVS         +R  + + GC  N  DS  +     + G++     + A+++V+NTC  
Sbjct: 1   MVSATSASPADGRRVALLTLGCARNEVDSEELAARLHADGWQVTTDGEGAEVVVVNTCGF 60

Query: 73  REKAAE-KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ 131
            EKA +  + + L                  VV AGC+A+  G E+    P    V+   
Sbjct: 61  VEKAKQDSIQTLLAAAETGAK----------VVAAGCMAERYGRELADSLPEAQAVLSFD 110

Query: 132 TYYRLPELLER--ARFGKRVVDTDYSVEDKFERLSIVD---------------------- 167
            Y   P++ +R  A      +D  ++  D+ E L +                        
Sbjct: 111 DY---PDISDRLGAVLAGTAIDA-HTPRDRRELLPLTPVRRREAAVSLPGHGTRAAAAGP 166

Query: 168 GGYN-----------------RKR---GVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
           GG +                 R+R   G  A L +  GCD+ C FC +P  RG  +SR  
Sbjct: 167 GGRSAPVEVDEHTPAHLRPVLRRRLDTGPVASLKLASGCDRRCAFCAIPAFRGAFVSRPP 226

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
            +++ EA  L   GV E+ L+ +N +++ GK L G+      LL  L+ + G+VR+R + 
Sbjct: 227 EELLAEAEWLARTGVRELVLVSENSSSY-GKDL-GDPRALEKLLPQLAAVDGIVRVRASY 284

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
             P +    L++A      +  Y  L  Q  S+ +L+ M R  +   +  ++  +R++ P
Sbjct: 285 LQPAETRPGLVEAIATTPGVAAYFDLSFQHSSEPVLRRMRRFGSTERFLDLLASVRALAP 344

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV- 386
           +    S+FIVGFPGET  D    +  +++        F YS   GT  + +  +V     
Sbjct: 345 EAGARSNFIVGFPGETRADVAELVRFLNEARLDAIGVFDYSDEDGTEAAGLSGKVSATTV 404

Query: 387 --KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK--HGKEKGKLVGRSPWLQ-SVVLN 441
             + +RL  L  +L  Q+       +G  ++VL++    G  +G+   ++P +  S  L 
Sbjct: 405 KRRYDRLGALADELCAQRAEQR---LGSTVQVLVDSVDDGVVEGRAAHQAPEVDGSTTLV 461

Query: 442 SKNHNIGDIIKVRITDV 458
           + +    D+  +R  D+
Sbjct: 462 APSGGGVDLAALRPGDL 478


>gi|255323492|ref|ZP_05364623.1| 2-methylthioadenine synthetase [Campylobacter showae RM3277]
 gi|255299529|gb|EET78815.1| 2-methylthioadenine synthetase [Campylobacter showae RM3277]
          Length = 415

 Score =  123 bits (309), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 94/349 (26%), Positives = 177/349 (50%), Gaps = 24/349 (6%)

Query: 53  YERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQA 112
           YE  + +  AD+I++NTC     A E+    +  I ++  +R K  G LLVV  GC+ Q 
Sbjct: 8   YEITSDVASADVIIVNTCGFINSAKEES---IRAILDMHEARKK--GSLLVVT-GCLMQR 61

Query: 113 EGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNR 172
             EE+++  P V++  G   Y ++ E++ + +    +   D  ++   ER+ I    Y+ 
Sbjct: 62  YREELMKELPEVDLFTGVGDYDKIDEIILKKQ---NLFSPDTYLQASEERV-ITGSNYH- 116

Query: 173 KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNV 232
                A++ I EGC++ C+FC +P  +G   SR+L  +VDE +KL+  G  + + L Q+ 
Sbjct: 117 -----AYIKISEGCNQKCSFCAIPTFKGKLKSRALENIVDEVQKLVKKGYYDFSFLSQDS 171

Query: 233 NAW-RGKGL-DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY 290
           +++ R   + DG       L+ ++ +I+G+   R    +P   S+ LI+      V + Y
Sbjct: 172 SSYMRDHAVSDG----LISLIDAVEKIEGVKTARILYLYPSTTSNALIERIIASRVFVNY 227

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
             +P+Q  S+++LK M R   A   +++++ ++   P   + +  IVG PGE++ +F   
Sbjct: 228 FDMPIQHSSEKMLKIMRRGSGAVRIKELLNLMKKA-PGAFLRTGVIVGHPGESEAEFDEL 286

Query: 351 MDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLR 399
              + +  + +  +F YS    T    M EQ+   + ++RL  ++K  R
Sbjct: 287 CAFLQEFKFDRVSAFAYSKEEDTLSYEM-EQLPAKIISKRLSKIEKITR 334


>gi|157164518|ref|YP_001467029.1| hypothetical protein CCC13826_0582 [Campylobacter concisus 13826]
 gi|238065314|sp|A7ZE21|RIMO_CAMC1 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|112800040|gb|EAT97384.1| conserved hypothetical protein [Campylobacter concisus 13826]
          Length = 436

 Score =  123 bits (308), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 96/368 (26%), Positives = 185/368 (50%), Gaps = 26/368 (7%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ DS  M      Q Y+  + + DAD+I++NTC   + A E+    +     L
Sbjct: 8   SLGCNKNLVDSEIMLGRL--QNYDITDDISDADVIIVNTCGFIKSAKEESIQTI-----L 60

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
           +    ++ G LLVV  GC+ Q   +E+++  P V++  G   Y ++ E++ + +    + 
Sbjct: 61  EMHEARKNGSLLVV-TGCLMQRYKDELIKELPEVDLFTGVADYDKIDEIILKKQ---NLF 116

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
             +  ++   ER+ I    Y+      A++ I EGC++ C+FC +P  +G   SRSL  +
Sbjct: 117 SPETYLQANEERV-ITGSNYH------AYIKISEGCNQKCSFCAIPTFKGKLKSRSLENI 169

Query: 211 VDEARKLIDNGVCEITLLGQNVNAW-RGKGL-DGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
            +E + L+  G  + + L Q+ +++ R +G+ DG      +L+  + +I G+   R    
Sbjct: 170 TNEVKNLVKKGYYDFSFLSQDSSSYMRDQGINDG----LINLIDEIEKINGVRSARILYL 225

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
           +P   S  LI       +   Y  +P+Q  S+ +LK M R   A + +++++ +R+ +  
Sbjct: 226 YPSTTSKELISRIIASPIFHNYFDMPIQHISENMLKIMKRGSGAKKIKELLNLMRNAQNS 285

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
             + +  IVG PGE+++DF    + +++  + +  +F YS    T    M EQ+   + +
Sbjct: 286 F-LRTGVIVGHPGESEEDFEELCEFLEEFKFDRISAFAYSKEEDTASFEM-EQIPAKIIS 343

Query: 389 ERLLCLQK 396
           +RL  ++K
Sbjct: 344 KRLSKIEK 351


>gi|309811282|ref|ZP_07705071.1| ribosomal protein S12 methylthiotransferase RimO [Dermacoccus sp.
           Ellin185]
 gi|308434764|gb|EFP58607.1| ribosomal protein S12 methylthiotransferase RimO [Dermacoccus sp.
           Ellin185]
          Length = 493

 Score =  123 bits (308), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 121/495 (24%), Positives = 210/495 (42%), Gaps = 69/495 (13%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V + GC  N  DS  +     ++G+  V+   +AD+ V+NTC   E+A +     L    
Sbjct: 11  VVTLGCARNEVDSEELAGRLSAEGWTLVDDAAEADVAVVNTCGFVEQAKKDSIDAL---- 66

Query: 89  NLKNSRIKEGGDLLVVVA-GCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147
            L+ + +KE G    VVA GC+A+  G+++  + P  + V+G  +Y  +   L     G 
Sbjct: 67  -LEANELKESGRTQAVVAVGCLAERYGKQLADQLPEADAVLGFDSYTDMSTHLTSVLNGH 125

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAF---------------------------- 179
           +     +   D+ + L I         G  A                             
Sbjct: 126 K--PEAHMPGDRRKLLPISPAKRQEGAGGLALPGHGAPVSEPSDVEVASPVATPRVIRAR 183

Query: 180 --------LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQN 231
                   L I  GCD+ C FC +P  RG  ISR  + V+ EAR L ++ V E+ L+ +N
Sbjct: 184 LDGRPWAPLKIASGCDRRCAFCAIPAFRGAFISRRPADVLAEARWLGEHDVKEVFLVSEN 243

Query: 232 VNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL 291
             ++ GK L G+      +L  L  + G+ R+R +   P ++   L+    +   + PY 
Sbjct: 244 STSY-GKDL-GDLRLLDTMLPELVAVDGIERVRVSYLQPAEIRPDLLDVMANTPGIAPYF 301

Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351
            +  Q  S  +L++M R      +  ++D +R   P+  I S+ IVGFPGE++ D    +
Sbjct: 302 DISFQHASGPLLRTMRRFGDRESFLGLLDDVRRRVPNAGIRSNVIVGFPGESEKD----L 357

Query: 352 DLVDKIGYAQAFS----FKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFND 407
           D +++   A        F YS   GT      +++ ++    RL   +    E  +   +
Sbjct: 358 DELEQFLVAARLDVVGVFGYSDEDGTEAETYADKLPQDEIDARLEHFRTLTEELNLQRAE 417

Query: 408 ACVGQIIEVLIEKHGKEKG-------KLVGRS----PWLQSVVL----NSKNHNIGDIIK 452
             +G+ +EVLIE    +         + VGR+    P +  +      + +   +GDI++
Sbjct: 418 ERIGERLEVLIEATESDDEDDPEAAVRHVGRAGQQGPDVDGMTYVEAPDGRELRVGDIVE 477

Query: 453 VRITDVKISTLYGEL 467
           V +   +   L GEL
Sbjct: 478 VEVVATEGIDLVGEL 492


>gi|294643380|ref|ZP_06721199.1| conserved domain protein [Bacteroides ovatus SD CC 2a]
 gi|292641258|gb|EFF59457.1| conserved domain protein [Bacteroides ovatus SD CC 2a]
          Length = 209

 Score =  122 bits (307), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 63/196 (32%), Positives = 115/196 (58%), Gaps = 12/196 (6%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F+++YGCQMNV DS  +  +    GY    ++++AD + +NTC IR+ A +K+ + L
Sbjct: 20  KKLFIETYGCQMNVADSEVIASVMQMAGYSVAETLEEADAVFMNTCSIRDNAEQKILNRL 79

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
               +LK    K+   L+V V GC+A+   ++++     V++VVGP  Y  LP+L+    
Sbjct: 80  EFFHSLK----KKKKRLIVGVLGCMAERVKDDLITNHH-VDLVVGPDAYLTLPDLIAAVE 134

Query: 145 FGKRVVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            G++ ++ + S  + +  +  S + G +     ++ F++I  GC+ FCT+C+VPYTRG E
Sbjct: 135 TGEKAINVELSTTETYRDVIPSRICGNH-----ISGFVSIMRGCNNFCTYCIVPYTRGRE 189

Query: 203 ISRSLSQVVDEARKLI 218
            SR +  +++E   L+
Sbjct: 190 RSRDVESILNEVADLV 205


>gi|268679076|ref|YP_003303507.1| MiaB-like tRNA modifying enzyme YliG [Sulfurospirillum deleyianum
           DSM 6946]
 gi|268617107|gb|ACZ11472.1| MiaB-like tRNA modifying enzyme YliG [Sulfurospirillum deleyianum
           DSM 6946]
          Length = 436

 Score =  122 bits (307), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 108/443 (24%), Positives = 208/443 (46%), Gaps = 30/443 (6%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++  + S GC  N+ DS  M      + YE  +    AD++++NTC     A E+    L
Sbjct: 2   KKLHLVSLGCNKNLVDSEVMLGKL--RAYELCDDASQADVLIVNTCGFIGPAKEES---L 56

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             I  L  +R K+G   L+V+AGC+++   E++ +    V++  G   Y ++ E++  A 
Sbjct: 57  NTIFALHEAR-KKGS--LLVMAGCLSERYKEDLTKELKEVDLFTGVGDYDKIDEII--AL 111

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
              R   + Y + ++ ER  ++ G         A++ + EGC++ C+FC +P  +G   S
Sbjct: 112 RQNRFTPSTYLMNEE-ER--VITGS-----NAHAYVKLSEGCNQACSFCAIPGFKGKLHS 163

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R+L  ++ E + L+  G  + + + Q+ +++      GEK     L+ ++ +I+G+   R
Sbjct: 164 RTLESLIKEVKALVSKGFYDFSFISQDSSSYLRDM--GEKEGLIKLIDAVEKIEGIKSAR 221

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
               +P   S+ LI+      +   Y  +P+Q  SD +LK M R        + ++ +R 
Sbjct: 222 ILYLYPTTTSNALIERIIASPLCHNYFDMPIQHISDTMLKRMKRGAGRERIMEQLEMMRK 281

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             P+  I + FIVG P E+D +F   +    +  + +   F YS    T    M  ++D 
Sbjct: 282 A-PNSFIRTSFIVGHPEESDAEFEELLSFAKRFDFDRVNIFAYSDEEDTSAYEMHGKIDT 340

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQS------V 438
               +R+  L K ++ +     +  VG+ + +LIE    E    +G    L +      +
Sbjct: 341 KTINKRIKQLDKIVQAKTKQSFEKEVGKEVLILIEGESSEHELFMGARELLWAPGIDGEI 400

Query: 439 VLNS---KNHNIGDIIKVRITDV 458
           ++N    +N +IG   + +IT++
Sbjct: 401 LVNDSEVENVSIGASYRAKITEL 423


>gi|256081446|ref|XP_002576981.1| radical sam proteins [Schistosoma mansoni]
 gi|238662272|emb|CAZ33218.1| radical sam proteins, putative [Schistosoma mansoni]
          Length = 810

 Score =  122 bits (306), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 132/530 (24%), Positives = 219/530 (41%), Gaps = 109/530 (20%)

Query: 19  DQCI---VPQRF--FVKSYGCQMNVYDSLRMEDMFFSQGYE----------------RVN 57
           D C+   +P++F  FV+++GC  N  DS  M  +    GY                  ++
Sbjct: 35  DLCLSSNLPEKFHVFVQTWGCAHNTSDSEYMTGLLVKYGYRVTLDGSQITNGCESEANIS 94

Query: 58  SMDD----------------------------------ADLIVLNTCHIREKAAEKVYSF 83
           S  D                                  AD+ VLN+C ++  A +     
Sbjct: 95  STSDFACGCQDNGDQCCSKEKNSDKGNVVLSNCDAKKNADVWVLNSCTVKGPAED----- 149

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQA-EGEEILRRSPIVNVVVGPQTYYRLPELLER 142
               RN     IK G    VV +GCV Q+  G + L+       V+G     R+ E++E 
Sbjct: 150 --HFRNAVLEGIKLGKR--VVASGCVPQSRPGADYLKGVS----VIGVHQIDRIVEVVEE 201

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
               +      +S       +++ D    R+  +   L I  GC   CT+C     RGI 
Sbjct: 202 T-LQESSSSATHSSSSSLAGIAL-DLPKIRRNPLIEILAISTGCLNACTYCKTKQARGIL 259

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD---------------GEKCTF 247
            S  + Q++D A++    GV E+ L  +++ A+ G+ LD                   T 
Sbjct: 260 ASYPIEQLLDRAKQAFKEGVKELWLTSEDLGAY-GRDLDRTTSSLICPGLSEKWSHHITL 318

Query: 248 SDLLYSLSEI-KGLVRLRYTTSHPRDMSDCLIKAHGDLDV--LMPYLHLPVQSGSDRILK 304
           +DLL  L  I      LR   ++P  + D L++    L    +  +LH+PVQSGSD +L 
Sbjct: 319 ADLLAGLVPIIPAGCMLRLGMTNPPYILDQLVEIAEVLSHPRVYSFLHIPVQSGSDAVLD 378

Query: 305 SMNRRHTAYEYRQIIDRI-RSVRPD----------------IAISSDFIVGFPGETDDDF 347
           +M R +T  E+  ++D + ++V+P                 + I++D I GFP ET++DF
Sbjct: 379 AMKREYTMEEFSSVVDYLMQNVKPPNLPPGAAHDTVNGSGTLTIATDVICGFPTETNNDF 438

Query: 348 RATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFND 407
             T++L++K  +      ++ PR GTP +NM  + + +    R   L    R  +    D
Sbjct: 439 NETVELIEKYQFPVLHINQFFPRPGTPAANMSRKANSSEVKSRTRRLHDLFRSYRTY--D 496

Query: 408 ACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITD 457
             VG  + VLI +   +    VG +   + ++L       G I+ VRI +
Sbjct: 497 GRVGCEVRVLITEPSFDGKFWVGHTKAYEQILLPKDPDVYGRIVLVRIIE 546


>gi|254457391|ref|ZP_05070819.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Campylobacterales
           bacterium GD 1]
 gi|207086183|gb|EDZ63467.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Campylobacterales
           bacterium GD 1]
          Length = 437

 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 110/459 (23%), Positives = 214/459 (46%), Gaps = 57/459 (12%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           +  +  + S GC  N+ D+  M  M   Q +E  ++  +AD+I++NTC   + A ++   
Sbjct: 1   MSNKLHIVSLGCTKNLVDTEVM--MGKLQNFELTDTESEADVIIVNTCGFIDAAKQES-- 56

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-- 140
            +  + NL  +R KE  D ++V+AGC+++   E++  + P V++  G   Y  + ELL  
Sbjct: 57  -INTVLNLHEAR-KE--DSVLVMAGCLSERYKEDLATQMPEVDIFTGVGDYDHIDELLRE 112

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT--AFLTIQEGCDKFCTFCVVPYT 198
           +++RF   V               ++DG      G T  A++ + EGC++ C+FC +P  
Sbjct: 113 KKSRFSDEVF--------------LIDGSERVVTGSTYHAYIKLSEGCNQTCSFCAIPSF 158

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-RGKGLDGEKCTFSDLLYSLSEI 257
           +G   SR+L  +  E   L+  G  + + + Q+ +++ R + +   K   S L+  +  I
Sbjct: 159 KGKLNSRNLDSIAKEVEGLVAKGYYDFSFVSQDSSSYLRDQNI---KDGLSLLIQRIELI 215

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
           +G+   R    +P   +  L+K     ++   Y  +P+Q  +D +L+ M R     +  +
Sbjct: 216 EGVKSARILYLYPSTTTISLLKNIAKSEIFHNYFDMPIQHINDDMLRMMKRGFGKDKTIE 275

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
           ++D +R + P+  + + FIVG P ET++ F    +     G+ +   F YS    TP  +
Sbjct: 276 LLDFMRGL-PNSFVRTSFIVGHPDETEEMFEEMCEFAASFGFDRINVFSYSDEETTPAYD 334

Query: 378 MLEQVDENVKAERLL--------CLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV 429
           M  ++   + A R          C  K L+ +        VG+ IE++I+    E   L+
Sbjct: 335 MSNKISVELIASRAQILGDIASECTHKSLQNE--------VGKDIELIIDGESNEHEYLL 386

Query: 430 G--RSPWLQ----SVVLNSKNHN----IGDIIKVRITDV 458
              ++ W       + +N +  +     G I K ++T++
Sbjct: 387 SARKTIWAPEIDGEIYVNDRTKDDELEFGKIYKAKVTEL 425


>gi|237756406|ref|ZP_04584949.1| conserved hypothetical protein [Sulfurihydrogenibium yellowstonense
           SS-5]
 gi|237691441|gb|EEP60506.1| conserved hypothetical protein [Sulfurihydrogenibium yellowstonense
           SS-5]
          Length = 179

 Score =  121 bits (304), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 69/181 (38%), Positives = 115/181 (63%), Gaps = 9/181 (4%)

Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351
           HLP+Q+GSDRIL++M+R +T  EY Q I+ ++   P+IA+S+D IVGFPGET +D+  T+
Sbjct: 1   HLPIQAGSDRILQAMDRGYTQKEYLQKIELLKKYIPNIALSTDIIVGFPGETYEDYLETV 60

Query: 352 DLVDKIGYAQAFSFKYSPRLGTPGSN--MLEQVDE-NVKAERLLCLQKKLR-EQQVSFND 407
            ++ ++ Y Q F+FKYSPR GTP ++  M E  +E + +   L+ LQK +  ++ + + D
Sbjct: 61  KVIKEVEYDQVFAFKYSPRPGTPAADLPMTESPEELSKRLNDLINLQKDITFKKNLGYQD 120

Query: 408 ACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
               +I+E+L+E+  +E  KLVGR+   + V        +G ++ V+I  V   +L G +
Sbjct: 121 ----KIVEILVEEINQE-NKLVGRTRTNKLVYAEGSPEYLGKLVNVKIEKVNRFSLEGSI 175

Query: 468 V 468
           +
Sbjct: 176 I 176


>gi|237750091|ref|ZP_04580571.1| conserved hypothetical protein [Helicobacter bilis ATCC 43879]
 gi|229374278|gb|EEO24669.1| conserved hypothetical protein [Helicobacter bilis ATCC 43879]
          Length = 431

 Score =  121 bits (304), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 100/396 (25%), Positives = 188/396 (47%), Gaps = 26/396 (6%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++  V S GC  N+ DS  M      Q YE    +  AD+I++NTC   E A ++    L
Sbjct: 2   KKLHVVSLGCSKNLVDSEIMLGKL--QDYEITQDLGSADVIIINTCGFIEAAKKES---L 56

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           G I      R K+G   L+V +GC+     +EI    P ++++ G   Y ++  +++   
Sbjct: 57  GHIFEALEGR-KKGA--LLVASGCLVARYAKEIKEMIPEIDILTGVSDYDKIDTMIK--- 110

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
             K+ V  D     K E+  +V G       + A++ I EGC++ C+FC +P  +G   S
Sbjct: 111 -DKKGVMNDSVYLQKDEK-RVVTGSQ-----IHAYVKISEGCNQQCSFCAIPNFKGKLQS 163

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAW-RGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           RS+  +++E   L   G  +I+ + Q+ +++ R KG++       + + +   IK   R+
Sbjct: 164 RSIDSILNEVESLAKQGYKDISFIAQDTSSFLRDKGVNDGLLKLINAIDAQGAIKS-ARI 222

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
            Y      D+   L+    +  +   Y  +P+Q  +  +L  M R H   +  ++++ ++
Sbjct: 223 LYLYPSSTDIE--LLDGIANSQIFQNYYDMPIQHSAKSVLSHMQRSHK--DMIKLLEYMK 278

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
            + P+  + S  IVG+P ET+DDF A  + ++   + +   F+YS    T     LE++ 
Sbjct: 279 KI-PNSFVRSSVIVGYPTETEDDFNALCEFLESFRFDRLNVFEYSKEEDTKAGK-LEEIP 336

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419
             ++ +R+  ++K L +       A +   I  +IE
Sbjct: 337 RKIRTQRINKVKKILAKIDKQHFSAMLDTHIPCIIE 372


>gi|261323191|ref|ZP_05962388.1| conserved hypothetical protein [Brucella neotomae 5K33]
 gi|261299171|gb|EEY02668.1| conserved hypothetical protein [Brucella neotomae 5K33]
          Length = 350

 Score =  121 bits (303), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 97/297 (32%), Positives = 140/297 (47%), Gaps = 38/297 (12%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
            P+  FV S GC   + DS R+     S+GYE     D ADL+++NTC   + A ++   
Sbjct: 3   APRVSFV-SLGCPKALVDSERIITGLRSEGYEISRKHDGADLVIVNTCGFLDSARDESLE 61

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +G   N       E G   V+V GC+  AE + I  R P V  + GPQ Y    E +  
Sbjct: 62  AIGLALN-------ENGK--VIVTGCLG-AEPDVIRERHPNVLAITGPQAY----ESVMN 107

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           A     V +      D F  L    G     R   A+L I EGC   C+FC++P  RG  
Sbjct: 108 A-----VHEVAPPAHDPFVDLVPPQGVKLTPRHY-AYLKISEGCSNRCSFCIIPALRGDL 161

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE-----------KCTFSDLL 251
           +SR +++V+ EA KL+  GV EI ++ Q+ +A+   GLD +           +  F DL 
Sbjct: 162 VSRPINEVLREAEKLVQAGVKEILVISQDTSAY---GLDIKYQEAMWQDRTVRTKFLDLS 218

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
             L E+   VR+ Y   +PR      + A G    ++PYL +P Q  S  +LK+M R
Sbjct: 219 RELGEMGVWVRMHYVYPYPRVDEVIPLMAEGK---ILPYLDIPFQHASPAVLKNMRR 272


>gi|237750753|ref|ZP_04581233.1| conserved hypothetical protein [Helicobacter bilis ATCC 43879]
 gi|229373843|gb|EEO24234.1| conserved hypothetical protein [Helicobacter bilis ATCC 43879]
          Length = 412

 Score =  121 bits (303), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 102/353 (28%), Positives = 169/353 (47%), Gaps = 45/353 (12%)

Query: 51  QGYERVNSMDDADLIVLNTCHIREKAAEKV------YSFLGRIRNLKNSRIKEGGDLLV- 103
           + +E V S  +AD I++N+C +  KA  +V      YS  G+        +K  G+ L  
Sbjct: 6   KNHEIVASEIEADTIIINSCTVTNKADREVRGYARKYSSEGKKVLFTGCGVKHSGENLFN 65

Query: 104 --VVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFE 161
             +V G  A +  E I       N  +  +    LP    + R  K V DT         
Sbjct: 66  NGLVNGVFAHSHKESI-------NDFLSSENRVFLP----KERVNKHV-DTTL------- 106

Query: 162 RLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNG 221
            L  V G       V AF+ IQEGC+  C++C++P  RG   S S + ++D+ + L  +G
Sbjct: 107 -LPRVVGK------VRAFIKIQEGCNFACSYCIIPSVRGSARSFSEAHILDQIKILEQSG 159

Query: 222 VCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAH 281
           V E+ L G N+ ++   GLD  K   + L+  + +I G++R+R  +  P  +    ++  
Sbjct: 160 VTEVILTGTNIGSY---GLD-TKTHIATLIQKIHDISGILRIRLGSLEPSQIDSAFLEIL 215

Query: 282 GDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPG 341
            +L+ L  +LH+ +Q  S+ +LK MNR++T     ++ + I S     ++ +D+I+G  G
Sbjct: 216 -ELNKLERHLHIALQHTSESMLKIMNRKNTFERDLELFNAIAS--KGFSLGTDYIIGHYG 272

Query: 342 ETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN---MLEQVDENVKAERL 391
           ET + F   +  ++K+       F YSPR GT  +     L QV  +V  ERL
Sbjct: 273 ETKEIFDEAICNLEKLPLTHIHPFIYSPRFGTKSAKNELKLTQVKGDVAKERL 325


>gi|323455423|gb|EGB11291.1| hypothetical protein AURANDRAFT_1140 [Aureococcus anophagefferens]
          Length = 446

 Score =  120 bits (300), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 119/454 (26%), Positives = 201/454 (44%), Gaps = 50/454 (11%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVN---SMDDADLIVLNTCHIREKAAEKVY 81
           +R +V+++GC  NV DS  M  +  S+GYE        D AD  V+N+C +++ +     
Sbjct: 7   KRVYVRTFGCSHNVSDSEYMCGLLASEGYEVSTDRADADAADAWVVNSCTVKDPSQA--- 63

Query: 82  SFLGRIR-NLKNSRIKEGGDLLVVVAGCVAQAE----GEEILRRSPIVNVV--VGPQTYY 134
           +F+  +R  +K+ +        VVV+GC+ Q E     ++  R+ P ++    VG +   
Sbjct: 64  AFMKEVRRGMKDGKA-------VVVSGCIPQGERGLVKKQGGRKPPELDGASSVGIKQIG 116

Query: 135 RLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCV 194
           R+ E +  A  G+             E   +      R   +   + +  GC   C +C 
Sbjct: 117 RVNEAVAAALRGETFHALGSGPLPSLELPKV------RANALVEIVPLSSGCLGACAYCK 170

Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL 254
             + RG   S +L+ +V      + +GV E+ L  ++  A+ G  L        + L  +
Sbjct: 171 TRHARGALGSYALADIVARVDGALADGVGEVWLSSEDTGAY-GIDLGTSLGALLEALLPV 229

Query: 255 SEIKGLVRLRYTTSHPRDMSD-------CLIKAHGDLDVLMPYLHLPVQSGSDRILKS-- 305
            E      LR   ++P  + D       CL  A      +  +LH+PVQSGSD +L    
Sbjct: 230 LEAHPHGMLRVGMTNPPYVLDQLEVLGRCLNHAQ-----VYAFLHVPVQSGSDAVLAKDR 284

Query: 306 MNRRHTAYEYRQIIDRIRS-VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
           MNR +T  ++R ++D + + V   +++ +D I GFPGETDDDF AT  LV+   +     
Sbjct: 285 MNREYTVADFRAVVDGLAARVDGGLSLMTDVICGFPGETDDDFDATYALVEDYAFGLINI 344

Query: 365 FKYSPRLGTPGSNMLEQVDENVK--AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422
            ++  R GTP ++M       VK  + RL  L +  R       D  VG ++        
Sbjct: 345 SQFYARPGTPAASMKRVHTATVKDRSRRLSALTQTFRPY-----DGLVGTVVACAAHAEV 399

Query: 423 KEKG-KLVGRSPWLQSVVLNSKNHNIGDIIKVRI 455
            + G +LV  +     V++      +G   +VRI
Sbjct: 400 ADGGARLVCHTKTYAKVLVPFDRSLVGARFEVRI 433


>gi|328794005|ref|XP_003251960.1| PREDICTED: putative methylthiotransferase RP416-like, partial [Apis
           mellifera]
          Length = 447

 Score =  120 bits (300), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 79/252 (31%), Positives = 124/252 (49%), Gaps = 10/252 (3%)

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS-LSEIKGLVR 262
           S S+  VVD+ + L      EI L G ++ +W G+ L   K    DL  + L ++  L R
Sbjct: 1   SVSVKGVVDQVKALTQQQYNEIVLTGVDIASW-GRDLK-HKGRLGDLCKAILKDVPELKR 58

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LR ++  P  M   L          MP+LHL +Q+GSD ILK M RRH   +   +++++
Sbjct: 59  LRLSSIDPIGMDPVLWDLMASESRFMPHLHLSLQAGSDMILKRMKRRHQTKDVGSLVEQL 118

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           RS+RPDI +S+D I GFP E +  F+ T D +  +       F YS R GTP + M   +
Sbjct: 119 RSIRPDIGLSADIIAGFPTEDESYFQETYDFLKTVAIPYLHVFPYSERKGTPAAQM-PAI 177

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
             +V+ ER   L+    +   S+++  + + + +L+E   +      G S    +  L  
Sbjct: 178 AVSVRKERAARLRNLGAKIASSYHECFINKTVSILMETVDR------GHSEQFSAATLTG 231

Query: 443 KNHNIGDIIKVR 454
           K    G+II  R
Sbjct: 232 KEAIPGEIITAR 243


>gi|291333787|gb|ADD93471.1| MiaB-like tRNA modifying enzyme YliG [uncultured marine bacterium
           MedDCM-OCT-S04-C123]
          Length = 424

 Score =  120 bits (300), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 108/367 (29%), Positives = 168/367 (45%), Gaps = 48/367 (13%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ DS  M       G    N++DDAD++V+NTC   + A E+    +     L
Sbjct: 3   SLGCAKNLVDSEIMLGHLMQAGMTITNNVDDADVVVVNTCSFIDSAQEESVDTILESSEL 62

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV- 149
             S+ K  G  L+V AGC+ Q   +E+    P V+V +G     ++PE + +A   +   
Sbjct: 63  --SKAKHLGQGLIV-AGCLTQRYRKELPELLPEVDVFMGIDQVDQIPEFVRQAHKHREKK 119

Query: 150 ---------VDTDYSVEDKFERLSIVD--------GGYNRKR-----GVTAFLTIQEGCD 187
                       D +  +  E L ++D          Y   R        A+L I EGC+
Sbjct: 120 ISHEENAGKSSDDAATNESEEMLPVLDVTARPNYIPDYTTPRFRLTPQHFAYLKIAEGCN 179

Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------------ 235
             C+FC++P  RG   SR    +V EA+ ++ +G+ EI L+ Q+   +            
Sbjct: 180 HPCSFCIIPRMRGSHRSRRPEDIVQEAKAMVRDGIKEINLISQDSTYYGMDLRENHKRNI 239

Query: 236 --------RGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL 287
                     + L  +  T S LL  L+ I+G   +R   +HP   +D LI+       +
Sbjct: 240 ASPQKFKEASEALPEDASTLSSLLRQLNAIEGDFWIRILYTHPAHWTDELIQTIAKCKKV 299

Query: 288 MPYLHLPVQSGSDRILKSMNRRHTAYEY-RQIIDRIRSVRPDIAISSDFIVGFPGETDDD 346
             Y+ +P+Q     +L+ M RR T+ EY  ++I RIR   P+IAI + FIVGFPGET+  
Sbjct: 300 AKYVDIPLQHIHSTMLERM-RRETSREYIEELIQRIREGIPNIAIRTTFIVGFPGETEGA 358

Query: 347 FRATMDL 353
           F +   L
Sbjct: 359 FESLKHL 365


>gi|221194815|ref|ZP_03567872.1| RNA modification enzyme, MiaB family [Atopobium rimae ATCC 49626]
 gi|221185719|gb|EEE18109.1| RNA modification enzyme, MiaB family [Atopobium rimae ATCC 49626]
          Length = 426

 Score =  119 bits (299), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 103/405 (25%), Positives = 184/405 (45%), Gaps = 48/405 (11%)

Query: 33  GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92
           GC++N  +   M       G   V   D A +IV NTC +  +A  K    +     L +
Sbjct: 15  GCRVNRVELDLMASDLIQLGCAIVEPKDAAAIIV-NTCAVTAEAEAKTRKAIRHAAALPH 73

Query: 93  SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDT 152
           +        LVV  GCVA    +E+   +P  NVVV  +                     
Sbjct: 74  AP-------LVVATGCVASLFADELSSLAP--NVVVETRK-------------------- 104

Query: 153 DYSVEDKFERLS-----IVDGGYNRKRGVTAFLT-----IQEGCDKFCTFCVVPYTRGIE 202
           D   E   + L      + D GY  ++      T     IQ+GC+  C++C+V   RG  
Sbjct: 105 DMVAEVVMQELGCALDGVTDEGYLLQKPTPTGRTRPGIKIQDGCNNRCSYCIVWKARGAA 164

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            S   ++V+ + ++  + G  E+ L G N+ ++  +  + +      LL  +     + R
Sbjct: 165 RSLDPAEVLRQIQEAQEAGAHEVVLTGINLGSYTSRFAEKD-VRLPGLLRLILRKTTIER 223

Query: 263 LRYTTSHPRDMSDCLIKA----HGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           +R ++  P D+++ L+++    HG +    P+LH+ +QSG D  L  M R + A  YR  
Sbjct: 224 VRLSSLEPPDVNEALLESIAASHGRI---APFLHICLQSGCDETLHRMRRAYGAELYRSA 280

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           +   R+  P +A+ +D IVGFPGET+++F  +     ++ +++   F+YS R GTP ++ 
Sbjct: 281 VAAARTYLPQVALGTDLIVGFPGETEEEFEESYAFCKEMNFSKMHLFRYSKRPGTPAADA 340

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK 423
             QV   + A R   +++  ++ +     + VG    V++++ GK
Sbjct: 341 PNQVPPQIMAARAHKMRELAKKMRYENAQSLVGSTDLVIVQRPGK 385


>gi|253828157|ref|ZP_04871042.1| conserved hypothetical protein [Helicobacter canadensis MIT
           98-5491]
 gi|253511563|gb|EES90222.1| conserved hypothetical protein [Helicobacter canadensis MIT
           98-5491]
          Length = 443

 Score =  119 bits (299), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 111/455 (24%), Positives = 209/455 (45%), Gaps = 33/455 (7%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA-EKVY 81
           + ++  + S GC  N+ DS  M        YE    +++AD++++NTC   E A  E + 
Sbjct: 1   MQKKLHLISLGCTKNLVDSEVMLGKL--SEYENTQEINEADVVIVNTCGFIEAAKKESIQ 58

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           + L  +   K   I       +V +GC+++   +E+    P ++++ G   Y ++ +++E
Sbjct: 59  TLLEALETKKQGAI-------LVASGCLSERYAKELKEEIPELDIITGVGDYDKIDKMIE 111

Query: 142 RARFGKRVVDTDYSV--EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
             + G++++     V   D+  +  I+ G       + A++ + EGC++ C+FC +P  +
Sbjct: 112 ERQKGEKILSNAKGVFLADETNK-RIISGS-----KIHAYIKLSEGCNQKCSFCAIPSFK 165

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-RGKGL-DGEKCTFSDLLYSLSEI 257
           G   SR+L   + E R L   G  + T + Q+ +++ R  G+ DG     S +     E 
Sbjct: 166 GKLHSRTLESTLKEVRNLASQGYSDFTFISQDSSSYLRDLGIKDGLVELISGIEDLAKEG 225

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
             +   R    +P   S  LI+   D  +   Y  +P+Q  S ++LK+M R     E+ +
Sbjct: 226 VNIKSARILYLYPATTSKKLIQKIIDSPIFHNYFDMPLQHASQKVLKTMGRNG---EFME 282

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
           +++ +R   P+  + + FI+G PGE +++F     L++   + +   F YS   GT  + 
Sbjct: 283 LLEMMRKA-PNSFVRTSFILGHPGEGEEEFEELCQLIENFSFDRINFFAYSKEEGTKSAT 341

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-----GKLVGRS 432
           M EQ+       RL  + K    Q         G  +  LIE   KE      G+ +  +
Sbjct: 342 M-EQIPSKTIHSRLKKINKIFTSQYQQNLKKLKGAEVTALIEGKSKEHEFFYAGRELRFA 400

Query: 433 PWLQ-SVVLNSKNHNIGDIIKVRITDVKISTLYGE 466
           P +   +++N K   I + I      VKI+ + GE
Sbjct: 401 PEIDGEILINDK--TIDEEITSGYYKVKITEIAGE 433


>gi|301629102|ref|XP_002943687.1| PREDICTED: hypothetical protein LOC100490174 [Xenopus (Silurana)
            tropicalis]
          Length = 1629

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 76/257 (29%), Positives = 129/257 (50%), Gaps = 21/257 (8%)

Query: 178  AFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA--- 234
            A+L I EGC+  CTFC++P  RG  +SR +  V+ EA+ L + GV E+ ++ Q+ +A   
Sbjct: 762  AYLKISEGCNHRCTFCIIPSMRGDLVSRPVGDVLKEAKALFEGGVKELLVISQDTSAYGV 821

Query: 235  --------WRGKGLDGEKCTFSDLLYSLSEIKGL-VRLRYTTSHPRDMSDCLIKAHGDLD 285
                    W GK +       +  L  L+   G  VRL Y   +P       + A G   
Sbjct: 822  DVKYRTGFWDGKPIKTRTLELARTLGGLAASYGAWVRLHYVYPYPSVDEIIPLMAEG--- 878

Query: 286  VLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDD 345
            +++PYL +P Q     +LK M R  +  +  + I R R++ PD+ I S FI GFPGET++
Sbjct: 879  LILPYLDVPFQHSHPDVLKRMKRPASGEKNLERIQRWRAMCPDLVIRSTFIAGFPGETEE 938

Query: 346  DFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN---MLEQVDENVKAERLLCLQKKLREQQ 402
            +F+  +D + +    +A  F YS   GT  ++   ML   +   +  R + + +++   +
Sbjct: 939  EFQHLLDFMREAQIDRAGCFAYSDVQGTDANHLPGMLPPEEREPRRARFMAVAEEVSSAK 998

Query: 403  VSFNDACVGQIIEVLIE 419
            +      VG  ++VL++
Sbjct: 999  LR---GRVGATMQVLLD 1012


>gi|58698371|ref|ZP_00373285.1| MiaB-like tRNA modifying enzyme [Wolbachia endosymbiont of
           Drosophila ananassae]
 gi|58535125|gb|EAL59210.1| MiaB-like tRNA modifying enzyme [Wolbachia endosymbiont of
           Drosophila ananassae]
          Length = 235

 Score =  119 bits (297), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 79/231 (34%), Positives = 123/231 (53%), Gaps = 8/231 (3%)

Query: 237 GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQ 296
           G  L G+    S +   L +I  L RLR ++    ++ D L+    +   LMP+LHL +Q
Sbjct: 11  GTDLLGKPSLGSMIRRVLKDIPELKRLRLSSIDVAEVDDELMDLIANESRLMPHLHLSLQ 70

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
           SG++ ILK M RRH   +  +   +++S+RP+IA  +D I GFP ETD+ F+ T+DL+ K
Sbjct: 71  SGNNLILKRMKRRHNREQVIEFCHKMKSLRPNIAFGADIIAGFPTETDEMFQDTVDLLKK 130

Query: 357 IGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEV 416
                  +F YS R  TP + M  QV ENV+ ER+  L++  +E   SF  + +     V
Sbjct: 131 TNIVYLHAFPYSERKNTPAARM-PQVPENVRKERVKNLREVNKEIMSSFCQSLINTKQSV 189

Query: 417 LIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
           L+E++       VGR+     + L SK      I+KV +  V+ + L G +
Sbjct: 190 LVEQNN------VGRAENFALIKLESKAQ-AKSIVKVNVKGVENNYLIGNI 233


>gi|315452867|ref|YP_004073137.1| putative MiaB-like tRNA modifying enzyme YliG/ Ribosomal protein
           S12 methylthiotransferase [Helicobacter felis ATCC
           49179]
 gi|315131919|emb|CBY82547.1| putative MiaB-like tRNA modifying enzyme YliG/ Ribosomal protein
           S12 methylthiotransferase [Helicobacter felis ATCC
           49179]
          Length = 431

 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 94/398 (23%), Positives = 183/398 (45%), Gaps = 30/398 (7%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +  + S GC  N+ DS  M        YE  + M  AD+I++NTC   + A E+    L 
Sbjct: 3   KLHLVSLGCSKNLVDSEVMLGKL--AHYELTSEMSLADVIIINTCGFIQSAKEESIRVLL 60

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
              N +    KEG   LVV +GC+++   +E+ +  P +++  G   Y ++  LL +   
Sbjct: 61  EAINGR----KEGA--LVVASGCLSERYKQELAKELPEIDIFTGVGDYDKIDTLLAQK-- 112

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRK---RGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
                      + +F +   + G   R      V A + + EGC++ C+FC +P  +G  
Sbjct: 113 -----------QSQFSKQVFLAGTQKRTIIGSQVHAHVKLSEGCNQSCSFCAIPSFKGRL 161

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-RGKGLDGEKCTFSDLLYSLSEIKGLV 261
            S+ +  V+ E  +L+  G  +++ + Q+ +++ + KG+   K     L+ ++ +   L 
Sbjct: 162 QSKEIKNVLVEIEQLVKQGFSDVSFIAQDSSSYLKDKGV---KDGLVQLIKAIDKQGALK 218

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
             R    +P   +  LI+   +  + M Y  +P+Q  SD +LK+M R      + ++++ 
Sbjct: 219 SARIFYLYPTTTTLELIETIANSPIFMNYFDMPIQHISDSMLKTMRRNSNKATHVRLLEA 278

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R+V P   + +  ++G P E + D     + +    + +   F +SP  GT    M  Q
Sbjct: 279 MRAV-PASFLRTTLLLGHPHEQEADIAELQEFLQSFSFDRINLFAFSPEEGTKAYEM-PQ 336

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419
           +   V   RL  +   ++ Q  +     VGQ +++++E
Sbjct: 337 IQSKVINARLDQINALVQAQVETSMQQLVGQTLDIIVE 374


>gi|322379262|ref|ZP_08053648.1| radical SAM domain-containing protein [Helicobacter suis HS1]
 gi|322379873|ref|ZP_08054160.1| radical SAM protein [Helicobacter suis HS5]
 gi|321147708|gb|EFX42321.1| radical SAM protein [Helicobacter suis HS5]
 gi|321148299|gb|EFX42813.1| radical SAM domain-containing protein [Helicobacter suis HS1]
          Length = 440

 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 96/401 (23%), Positives = 188/401 (46%), Gaps = 29/401 (7%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           +VP+ + V S GC  N+ DS  M        Y+    ++ AD+I++NTC   + A E+  
Sbjct: 9   LVPKLYLV-SLGCSKNLVDSEVMLGRL--ANYDLTQEINLADVIIINTCGFIQAAKEESV 65

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL- 140
             L    N +    KEG   LVV +GC+++   +++    P +++  G   Y R+  LL 
Sbjct: 66  RVLLEAINGR----KEGA--LVVASGCLSERYKKQLAAELPEIDIFTGVGDYDRIDALLT 119

Query: 141 -ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
            ++++F KRV           E+   + G       V A++ + EGC++ C+FC +P  +
Sbjct: 120 SKQSQFSKRVFLAG-------EQKRTITGS-----KVHAYVKLSEGCNQNCSFCAIPSFK 167

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE-KCTFSDLLYSLSEIK 258
           G   S+S+ +++ E   L   G  +I+ + Q+ +++    LD   K     L+ ++   +
Sbjct: 168 GRLQSKSIERILKEVEILAKQGFSDISFIAQDSSSYL---LDQNVKDGLIKLIKAIDTQQ 224

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
            +   R    +P   +  LI++  +  +   Y  +P+Q  SDR+LK+M R      + ++
Sbjct: 225 MIKSARIFYLYPTSTTLELIESIANSPIFANYFDMPIQHISDRMLKTMRRNSNKANHLKL 284

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           ++ + ++ P+  + +  ++G P E   D     D +    + +   F +S    T     
Sbjct: 285 LEAMHAI-PNRFLRTTLLLGHPHENSSDIEELQDFLQSFSFDRINLFAFSAEENTAAYKW 343

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419
            +   E++ A RL  +   + +Q  +     VGQ +EV++E
Sbjct: 344 PQLSQEDISA-RLDQINPLIEQQVQNSMQGLVGQTLEVIVE 383


>gi|330895565|gb|EGH27874.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Pseudomonas
           syringae pv. japonica str. M301072PT]
          Length = 153

 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 62/141 (43%), Positives = 91/141 (64%), Gaps = 6/141 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ +++++GCQMN YDS RM D+    Q  E     +DAD+I+LNTC IRE+A ++VYS 
Sbjct: 3   KKLYIETHGCQMNEYDSSRMVDLLGEHQALEVTARAEDADVILLNTCSIRERAQDRVYSQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR R LK +      ++++ V GCVA  EG  I  R+P V+VV GPQT +RLPE+++ A
Sbjct: 63  LGRWRELKLA----NPEMVIAVGGCVASQEGAAIRDRAPYVDVVFGPQTLHRLPEMIDAA 118

Query: 144 RFGK-RVVDTDYSVEDKFERL 163
           R  +   VD  +   +KF+ L
Sbjct: 119 RVTRLPQVDVSFPEIEKFDHL 139


>gi|291534091|emb|CBL07204.1| 2-methylthioadenine synthetase [Megamonas hypermegale ART12/1]
          Length = 169

 Score =  118 bits (295), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 59/167 (35%), Positives = 100/167 (59%), Gaps = 1/167 (0%)

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
           +LK+MNR +T   Y++++ +IR+  P+ + ++D IVGFPGETD+DF   ++ + +I Y  
Sbjct: 1   MLKAMNRGYTTAYYKELVAKIRNQFPEASFTTDLIVGFPGETDEDFAQMLEFLKEIRYDA 60

Query: 362 AFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKH 421
           A++F YS R GTP + M  QV + +K ERL  L     E  +  N + + + +EV++E  
Sbjct: 61  AYTFLYSKRSGTPAATMENQVPQELKKERLHKLMDAQNEISLEINQSLLNKTVEVMVEGP 120

Query: 422 GKEKGKL-VGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
            K    +  G +   + ++ + K+  IGD++KV+IT  +   L GEL
Sbjct: 121 SKTDPNVYTGHTRTNKIILWDHKDEQIGDLVKVKITHPQTWVLKGEL 167


>gi|167471079|ref|ZP_02335783.1| putative tRNA-thiotransferase [Yersinia pestis FV-1]
          Length = 127

 Score =  118 bits (295), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 55/121 (45%), Positives = 84/121 (69%), Gaps = 5/121 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS +M D+  S  GY+     ++ADL++LNTC IREKA EKV+S 
Sbjct: 8   KKLHIKTWGCQMNEYDSSKMADLLASTHGYQLTTIPEEADLLLLNTCSIREKAQEKVFSL 67

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LG+ + LK    ++   L++ V GCVA  EGE++ +R+P V+V+ GPQT +RLPE++   
Sbjct: 68  LGQWKLLK----EKNPQLIIGVGGCVASQEGEQLRQRAPCVDVIFGPQTLHRLPEMINHV 123

Query: 144 R 144
           +
Sbjct: 124 Q 124


>gi|158313057|ref|YP_001505565.1| RNA modification protein [Frankia sp. EAN1pec]
 gi|158108462|gb|ABW10659.1| RNA modification enzyme, MiaB family [Frankia sp. EAN1pec]
          Length = 595

 Score =  118 bits (295), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 72/241 (29%), Positives = 119/241 (49%), Gaps = 2/241 (0%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
           L +  GCD+ C FC +P  RG  +SR   +V+ EA  L   G  E+ L+ +N  ++ GK 
Sbjct: 245 LKLSSGCDRRCAFCAIPSFRGSHVSRRPEEVLAEAEWLAGQGARELVLVSENSTSY-GKD 303

Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
           L G+      LL  L+ + G+VR+R     P ++   L++       L PYL L  Q  S
Sbjct: 304 L-GDLRALEKLLPLLAAVPGIVRVRTVYLQPAELRPSLLEVLLTTPGLAPYLDLSFQHAS 362

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
             +L+ M R   + ++  ++ R R++ PD+   S+ IVGFPGETD+D    ++ +++   
Sbjct: 363 PAVLRRMRRFGGSTDFLDLLRRARALLPDLGARSNVIVGFPGETDEDVDILVNFLERADL 422

Query: 360 AQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419
                F YS   GT  + M   VD      R   +   + +   +  +  +G  +EVL+E
Sbjct: 423 DAVGVFGYSDEEGTEAAGMAGHVDPEEIESRRAEVTDLVEQLTAARAERRIGTTVEVLVE 482

Query: 420 K 420
           +
Sbjct: 483 E 483


>gi|256396949|ref|YP_003118513.1| MiaB-like tRNA modifying enzyme YliG [Catenulispora acidiphila DSM
           44928]
 gi|256363175|gb|ACU76672.1| MiaB-like tRNA modifying enzyme YliG [Catenulispora acidiphila DSM
           44928]
          Length = 529

 Score =  117 bits (293), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 83/269 (30%), Positives = 131/269 (48%), Gaps = 5/269 (1%)

Query: 175 GVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA 234
           G +A L +  GCD+ C+FC +P  RG  +SR    ++DEAR L   GV E+ L+ +N  +
Sbjct: 219 GPSAPLKLASGCDRRCSFCAIPAFRGSYLSRRPHDILDEARWLAGQGVRELVLVSENSTS 278

Query: 235 WRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP 294
           + GK L G+      LL  L+ I G+  LR +   P +M   LI      + ++PY  L 
Sbjct: 279 Y-GKDL-GDLKLLETLLPELTAIDGVDWLRVSYLQPAEMRPTLIDVMASTEGVVPYFDLS 336

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
            Q  +  +L+ M R      + ++++ IR+  P   + S+FIVGFPGET  DF      +
Sbjct: 337 FQHSAPGLLRRMRRFGGTDSFLELLEAIRTRVPHAGVRSNFIVGFPGETAADFEELETFL 396

Query: 355 DKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQII 414
            +        F YS   GT  +   +++DE+   ER+  L     E      +  VG+ I
Sbjct: 397 SQARLDAIGVFGYSDEDGTEAAGYEDKLDEDEIGERVAHLTGLAEELTAQRAEDRVGERI 456

Query: 415 EVLIEK---HGKEKGKLVGRSPWLQSVVL 440
           +VL+E     G  +G+   + P +   VL
Sbjct: 457 DVLVESVAHDGVAEGRAAFQGPEVDGSVL 485


>gi|297706881|ref|XP_002830253.1| PREDICTED: CDK5 regulatory subunit-associated protein 1-like,
           partial [Pongo abelii]
          Length = 282

 Score =  117 bits (293), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 77/235 (32%), Positives = 121/235 (51%), Gaps = 23/235 (9%)

Query: 221 GVCEITLLGQNVNAWR---------------GKGLDGEKCT------FSDLLYSLSEIKG 259
           G+ E+TLLGQNVN++R                +G      T      F+ LL  +S +  
Sbjct: 1   GLKEVTLLGQNVNSFRDNSEVQFNNAVPTNLSRGFTTNYKTKQGGLRFAHLLDQVSRVDP 60

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
            +R+R+T+ HP+D  D +++   + + +   +HLP QSGS R+L++M R ++   Y +++
Sbjct: 61  EMRIRFTSPHPKDFPDEVLQLIHERENICKQIHLPAQSGSSRVLEAMRRGYSREAYVELV 120

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
             +R   P +++SSDFI GF GET++D   T+ L+ ++ Y   F F YS R  T   + L
Sbjct: 121 HHVRESIPGVSLSSDFIAGFCGETEEDHIQTVSLLREVQYNMGFLFAYSMRQKTRAYHRL 180

Query: 380 -EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRS 432
            + V + VK  RL  L    RE+    N   VG    VL+E   K     L GR+
Sbjct: 181 KDDVPKEVKLRRLEELITVFREEATKANQTSVGCTQLVLVEGLSKRSATDLCGRN 235


>gi|238063411|ref|ZP_04608120.1| MiaB tRNA modifying enzyme yliG [Micromonospora sp. ATCC 39149]
 gi|237885222|gb|EEP74050.1| MiaB tRNA modifying enzyme yliG [Micromonospora sp. ATCC 39149]
          Length = 515

 Score =  117 bits (292), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 117/478 (24%), Positives = 200/478 (41%), Gaps = 55/478 (11%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +R  + + GC  N  DS  +     + G++     + AD++V+NTC   EKA +     L
Sbjct: 30  RRVALLTLGCARNEVDSEELAARLHADGWQVTTDGEGADVVVVNTCGFVEKAKQDSIQTL 89

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
               +             VV AGC+A+  G E+    P    V+    Y  +   L+   
Sbjct: 90  LAAADTGAK---------VVAAGCMAERYGRELAESLPEAQAVLSFDDYPDIAARLDAVV 140

Query: 145 FGKRVVDTDYSVEDKFERLSIVD----------GGYNRKR-------------------- 174
            G+  +D  ++  D+ E L +             G+   R                    
Sbjct: 141 AGE-ALDA-HTPRDRRELLPLTPVARRDSAVSLPGHGTSRAAVQTDEHTPAHLRQVLRRR 198

Query: 175 ---GVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQN 231
              G  A L +  GCD+ C FC +P  RG  +SR+  +++ EA  L   GV E+ L+ +N
Sbjct: 199 LDTGPVASLKLASGCDRRCAFCAIPAFRGAFVSRTPDELLAEAEWLAKTGVRELVLVSEN 258

Query: 232 VNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL 291
             ++ GK L G+      LL  L+ I G+VR+R +   P +    L++A      +  Y 
Sbjct: 259 STSY-GKDL-GDPRALEKLLPQLAAIDGIVRVRASYLQPAETRPGLVEAIATTPGVAAYF 316

Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351
            L  Q  S+ +L+ M R  +   + +++   R++ P     S+FIVGFPGET  D    +
Sbjct: 317 DLSFQHSSEPVLRRMRRFGSTERFLELLAAARALAPQAGARSNFIVGFPGETRGDVEELV 376

Query: 352 DLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV---KAERLLCLQKKLREQQVSFNDA 408
             +          F YS   GT  + +  +V       + +RL  L  +L  Q+      
Sbjct: 377 RFLSAARLDAIGMFDYSDEDGTEAAGLPGKVSAATIKRRYDRLSALADELCSQRAEER-- 434

Query: 409 CVGQIIEVLIEK--HGKEKGKLVGRSPWLQ-SVVLNSKNHNIGDIIKVRITDVKISTL 463
            +G  +EVL++    G  +G+   ++P +  S  L +      D+  +R  D+  +T+
Sbjct: 435 -LGSTVEVLVDSVDDGVVEGRAAHQAPEVDGSTTLVAPADGGVDLAALRPGDLVRATV 491


>gi|148907407|gb|ABR16837.1| unknown [Picea sitchensis]
          Length = 332

 Score =  116 bits (291), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 97/304 (31%), Positives = 140/304 (46%), Gaps = 64/304 (21%)

Query: 227 LLGQNVNAWRGKG-LDGE---------------------KCT---FSDLLYSLSEIKGLV 261
           LLGQNVN++     LDG                      K T   FS+LL  LS     +
Sbjct: 2   LLGQNVNSYNDISILDGNGAVPTGNSWALSQGFSSICKVKSTGLRFSNLLDRLSIEFPEM 61

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R R+T+ HP+D  D L+    D   +   +HLP QSGS  +L+ M R +T   Y  +++R
Sbjct: 62  RFRFTSPHPKDFPDDLLFLMKDRWNICRSIHLPAQSGSTAVLERMRRGYTREVYLDLVER 121

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLE 380
           I+++ PD+ +SSDFI GF GET+ D   T+ L+  +GY  A+ F YS R  T    N ++
Sbjct: 122 IQNIIPDVGLSSDFICGFCGETEQDHADTLSLIKSVGYDMAYLFAYSLREKTHAHRNYVD 181

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE--KGKLVGRSP----- 433
            V ++VK  RL  L    RE      D+ VG    +L+E   K   + +L+G+S      
Sbjct: 182 DVPDDVKQRRLSELISAFRESTGQRYDSQVGTTQLLLVEGPNKRAPESELIGKSDRGHRI 241

Query: 434 WLQSVVL-------------------------------NSKNHNIGDIIKVRITDVKIST 462
             Q+V L                               N +N  IGD ++V IT    +T
Sbjct: 242 SFQNVPLTDVSKLPPHRMEIAGLGDRPAEDALNLAINGNKRNPRIGDYVEVLITKSSRAT 301

Query: 463 LYGE 466
           L+GE
Sbjct: 302 LFGE 305


>gi|302846252|ref|XP_002954663.1| hypothetical protein VOLCADRAFT_64943 [Volvox carteri f.
           nagariensis]
 gi|300260082|gb|EFJ44304.1| hypothetical protein VOLCADRAFT_64943 [Volvox carteri f.
           nagariensis]
          Length = 401

 Score =  115 bits (289), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 95/355 (26%), Positives = 165/355 (46%), Gaps = 33/355 (9%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNS-MDDADLIVLNTCHIREKAAEKVYSF 83
           Q  +VK++GC  N+ DS  M       GY R ++  + ADL ++N+C ++  +   + S 
Sbjct: 7   QAVWVKTFGCSHNISDSEYMAGQLQDYGYRRESAGCNPADLWLINSCTVKGPSQAGMSSL 66

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVN--VVVGPQTYYRLPELLE 141
           +          +   G   ++VAGCV Q +     +R P +    V+G     R+ E +E
Sbjct: 67  IA---------VGRAGGKRLLVAGCVPQGD-----KRLPELQGVSVLGVTQIDRVVEAVE 112

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
               G  V       + +  RL +     NR       + I  GC   CT+C   + RG 
Sbjct: 113 ETLRGNTV---RLLAKKELPRLDLPKVRRNRH---IEIVPISTGCLGACTYCKTKHARGH 166

Query: 202 EISRSLSQVVDEARKLI-DNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI--- 257
             S   + +V+  R+   D  V EI +  ++  A+ G+ +    C+  +LL +L  +   
Sbjct: 167 LGSYDPAALVERVRQAAADPWVREIWISSEDTGAY-GRDIG---CSLPELLDALIAVLPP 222

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
            G   LR   ++P  + + L      L    +  YLH+PVQSGSD +L SM R +T  E+
Sbjct: 223 DGRTMLRVGMTNPPYVLEHLEALSAALRHPCVFSYLHVPVQSGSDAVLDSMKREYTVAEF 282

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370
           R+++D + +  P + +++D I  FPGE+  D   T++L+ +  +      ++ PR
Sbjct: 283 RRVVDTLLAGVPGMELATDIITAFPGESPGDHVRTLELLRQYRFPHTHISQFYPR 337


>gi|260841717|ref|XP_002614057.1| hypothetical protein BRAFLDRAFT_67358 [Branchiostoma floridae]
 gi|229299447|gb|EEN70066.1| hypothetical protein BRAFLDRAFT_67358 [Branchiostoma floridae]
          Length = 316

 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 80/304 (26%), Positives = 138/304 (45%), Gaps = 43/304 (14%)

Query: 173 KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNV 232
           +R V  F +    C   CT+C   + RG   S    ++V  AR+  + GV EI L  ++ 
Sbjct: 22  RRNVLIFPS--NSCLNQCTYCKTKHARGELGSYPPEEIVSRARQSFEEGVVEIWLTSEDT 79

Query: 233 NAWRGKGLDGEKCTFSDLLYSLSEI--------KGLVRLRYTTSHPRDMSDCLIKAHGDL 284
            A+ GK +     T  +LL+ L E+         G+    Y   H  +M+  L       
Sbjct: 80  GAY-GKDIG---VTLPELLWRLVEVIPEGCMLRVGMTNPPYILEHLEEMAKILSHPR--- 132

Query: 285 DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETD 344
             +  +LH+PVQ+ SD +L  M R +   +++Q++D ++   P + I++D I GFP ET 
Sbjct: 133 --VYAFLHVPVQAASDSVLMDMRREYCLSDFKQVVDFLKERVPAVTIATDVICGFPTETA 190

Query: 345 DDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVS 404
           +DF  T+ LV++  +   F  ++ PR GTP + M                 +++  Q+  
Sbjct: 191 EDFEETLQLVEEYKFPSLFINQFFPRPGTPAAKM-----------------RRVPPQE-- 231

Query: 405 FNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLY 464
                VG+I  VL+ +   +K   V  + +   V++      +G ++ V IT      L 
Sbjct: 232 -----VGEIQNVLVTEESHDKKFYVAHNKYYDQVLVPKDEKLLGKMVTVEITSTGKHYLM 286

Query: 465 GELV 468
           G L+
Sbjct: 287 GRLL 290


>gi|307111826|gb|EFN60060.1| hypothetical protein CHLNCDRAFT_133325 [Chlorella variabilis]
          Length = 298

 Score =  114 bits (286), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 72/234 (30%), Positives = 127/234 (54%), Gaps = 10/234 (4%)

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           S+    V+DEAR L+D+GV E+ L+ ++ N +     DG+    S +L  L +++GL  +
Sbjct: 25  SKPWQAVLDEARHLVDSGVVELNLIAEDTNQYGMDRRDGKG--LSQVLQELGKLEGLRWI 82

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R    +P   S+ LI        +  Y+ +P+Q  S+  L  MNR   A+    ++ ++R
Sbjct: 83  RLLYCYPSYFSEELIDEIATNPKVCKYIDIPLQHISNLTLLGMNRPPQAHTV-ALLHKLR 141

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              P +A+ + FI GFPGE++ D R  +D      + +   F+YS   GTP + + +Q+ 
Sbjct: 142 ERIPGLALRTTFISGFPGESEADHRELVDFCSSFRFERMGCFQYSEEDGTPAAELPDQLP 201

Query: 384 ENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPW 434
           + V+  R   L+ LQ+++ E+   +  + VGQ +EVL++ H  E G++ GR+ W
Sbjct: 202 QEVREARRDELISLQQRVGEE---WARSLVGQEVEVLVDGH-TEDGEVYGRTQW 251


>gi|331005430|ref|ZP_08328810.1| tRNA-i(6)A37 methylthiotransferase [gamma proteobacterium IMCC1989]
 gi|330420763|gb|EGG95049.1| tRNA-i(6)A37 methylthiotransferase [gamma proteobacterium IMCC1989]
          Length = 184

 Score =  114 bits (286), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 61/166 (36%), Positives = 96/166 (57%), Gaps = 2/166 (1%)

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
           +M R HT  EY+  +  ++ +RPDI+ SSDFI+GFPGET+ DF  TM+L+  + +  +FS
Sbjct: 2   AMKRGHTVLEYKSKLRALKKIRPDISFSSDFIIGFPGETEQDFLGTMNLIQDMNFDMSFS 61

Query: 365 FKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-K 423
           F YS R GTP +++ +   E +K +RL  LQ ++ +Q    +   VG +  VLI  +  K
Sbjct: 62  FVYSARPGTPAADLPDDTPEEIKKQRLKILQDRINQQSFDISRKMVGNVERVLITGYSKK 121

Query: 424 EKGKLVGRSPWLQSVVLNSKNHN-IGDIIKVRITDVKISTLYGELV 468
           + G+L GR+   + V     N   IG  + + I +   ++L G LV
Sbjct: 122 DPGQLSGRTENNRIVNFRCDNAELIGKFVDIDIQEALPNSLRGVLV 167


>gi|196019608|ref|XP_002119009.1| hypothetical protein TRIADDRAFT_62979 [Trichoplax adhaerens]
 gi|190577345|gb|EDV18505.1| hypothetical protein TRIADDRAFT_62979 [Trichoplax adhaerens]
          Length = 267

 Score =  114 bits (285), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 70/210 (33%), Positives = 112/210 (53%), Gaps = 5/210 (2%)

Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLL 251
           FC++PY RG   S  + +++  A+ L+D G  E+ L G ++  + G  L G K +  +++
Sbjct: 9   FCIIPYGRGNSRSVPVGEIIKYAQNLVDKGYKELVLTGVDITDY-GLDLPG-KPSLGNMI 66

Query: 252 YSLSE-IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
             L + +  + RLR ++    ++ D L          MP+LHL +Q+G D ILK M RRH
Sbjct: 67  NRLFKMVPDIKRLRLSSIDVAEIDDELFDIIIHEPKFMPHLHLSLQAGDDMILKRMKRRH 126

Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370
              +     + I   RP I + +D I GFP ETD+ F  T DL++++       F YSPR
Sbjct: 127 RRQQVIDFCNEIWKYRPQIVLGADVIAGFPTETDEMFNNTYDLIEQLKIVHLHVFPYSPR 186

Query: 371 LGTPGSNMLEQVDENVK--AERLLCLQKKL 398
             TP + M +   E +K  A++L  L++KL
Sbjct: 187 DNTPAARMPQVKSEVIKDRAKKLRDLKQKL 216


>gi|48477501|ref|YP_023207.1| oxidoreductase [Picrophilus torridus DSM 9790]
 gi|48430149|gb|AAT43014.1| hypothetical oxidoreductase [Picrophilus torridus DSM 9790]
          Length = 426

 Score =  114 bits (285), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 96/357 (26%), Positives = 164/357 (45%), Gaps = 47/357 (13%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           I   + + +SYGC +   ++    +     G E V+  + AD+ V+ TC + +   + + 
Sbjct: 24  IKSMKVYFESYGCTLEKSEAALYVNKMLQDGGELVDDPERADVSVIGTCVVIKHTEDHML 83

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNV-VVGPQTYYRLPELL 140
             +G +   K SR        V+V GC+A   G  +       N+ V+ P+ +       
Sbjct: 84  KRIGELS--KKSR-------NVLVLGCLATVNGNTLESE----NIRVIKPREF------- 123

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
            R+ +   + D       K +  SI+DG           + I +GC   C FC+   +RG
Sbjct: 124 -RSFYTGTLDDV------KIKEPSILDG-----------IPINQGCTGHCNFCISHISRG 165

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
             +SRS  ++V + R  I++G+ EI +   +  A+ GK ++ +    +DL+ S++ +   
Sbjct: 166 KLLSRSPEKIVGQVRMQIESGIREIRITSLDTAAY-GKDINTD---LADLINSITGLDVD 221

Query: 261 VRLRYTTSHPRDMSDCL---IKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
             LR     PR+  D L   I A+ + D +  +LHLPVQSG +RIL SMNR +   E   
Sbjct: 222 FMLRVGMMEPRNTYDILEKLIDAYKN-DKVFKFLHLPVQSGDNRILDSMNREYKIEEAGH 280

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
           +I R +   PD+  S+D I G+  E  +    T   ++          ++SPR  TP
Sbjct: 281 VIKRFKEEFPDMVFSTDIIAGYYTEDSESMENTYKFIETYMPDIINITRFSPRPYTP 337


>gi|308182893|ref|YP_003927020.1| 2-methylthioadenine synthetase [Helicobacter pylori PeCan4]
 gi|308065078|gb|ADO06970.1| 2-methylthioadenine synthetase [Helicobacter pylori PeCan4]
          Length = 439

 Score =  114 bits (285), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 98/394 (24%), Positives = 181/394 (45%), Gaps = 31/394 (7%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ DS  M    ++  Y   N    AD+I++NTC   E A ++       I+ +
Sbjct: 13  SLGCSKNLVDSEVMLGKLYN--YTLTNDTKSADVILINTCGFIESAKQE------SIQTI 64

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
            N+   +    +++ +GC+++   +EI    P V++  G   Y ++  L+ +        
Sbjct: 65  LNAAKDKKKGAILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDILIAKK------- 117

Query: 151 DTDYSVEDKFERLSIVDGGYNRK----RGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
                 +++F     +   YN +      V A++ I EGC++ C+FC +P  +G   SR 
Sbjct: 118 ------QNQFSEQVFLSEHYNARIITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSRE 171

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
           L  ++ E   L   G  ++T + Q+ +++      G+K     L+ ++ + + L   R  
Sbjct: 172 LDSILKEVENLALKGYKDMTFIAQDSSSFLYD--KGQKDGLIQLIRAIDKQQALKSARIL 229

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
             +P   +  LI A  D  V   Y  +P+Q  SD +LK M R  +   + +++D ++ V+
Sbjct: 230 YLYPSSTTLELIGAIEDSPVFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQVK 289

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
               I S  IVG P E + +F      +D+  + +   F +S    T   + LE+V + +
Sbjct: 290 ESF-IRSTIIVGHPEENEGEFEELSMFLDEFQFDRLNIFAFSAEENTHAYS-LEKVPKKI 347

Query: 387 KAERLLCLQK-KLREQQVSFNDACVGQIIEVLIE 419
              R+  L K  L+ Q  SF  A + + I+ L+E
Sbjct: 348 INARIKALNKIALKHQNHSFK-ALLNKPIKALVE 380


>gi|307637422|gb|ADN79872.1| Ribosomal protein S12p Asp88 methyl thio transferase [Helicobacter
           pylori 908]
 gi|325996012|gb|ADZ51417.1| Ribosomal protein S12p methylthiotransferase/Ribosome maturation
           factor [Helicobacter pylori 2018]
 gi|325997607|gb|ADZ49815.1| Ribosomal protein S12p methylthiotransferase [Helicobacter pylori
           2017]
          Length = 439

 Score =  114 bits (284), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 101/400 (25%), Positives = 184/400 (46%), Gaps = 33/400 (8%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA-EKVYSFLGRIRN 89
           S GC  N+ DS  M    ++  Y   N    AD+I++NTC   E A  E + + L   ++
Sbjct: 13  SLGCSKNLVDSEVMLGKLYN--YTLTNDAKKADVILINTCGFIESAKQESIQTILNAAKD 70

Query: 90  LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149
            K     EG   +++ +GC+++   +EI    P V++  G   Y ++  L+ +       
Sbjct: 71  KK-----EGA--ILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDILIAKK------ 117

Query: 150 VDTDYSVEDKFERLSIVDGGYNRK----RGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                  +++F     +   YN +      V A++ I EGC++ C+FC +P  +G   SR
Sbjct: 118 -------QNQFSEQVFLSEHYNARIITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSR 170

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            L  ++ E   L   G  ++T + Q+ +++      G+K     L+ ++ + + L   R 
Sbjct: 171 ELDSILKEVEDLALKGYKDMTFIAQDSSSFLYD--KGQKDGLIQLIKAIDKQQALKSARI 228

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
              +P   +  LI A  D  +   Y  +P+Q  SD +LK M R  +   + +++D ++ V
Sbjct: 229 LYLYPSSTTLELIGAIEDSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQV 288

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
           +    I S  IVG P E + +F      +D+  + +   F +S    T   + LE+V + 
Sbjct: 289 KESF-IRSTIIVGHPEENEGEFEELSAFLDEFRFDRLNIFAFSAEENTHAYS-LEKVPKK 346

Query: 386 VKAERLLCLQK-KLREQQVSFNDACVGQIIEVLIEKHGKE 424
           +   R+  L K  L+ Q  SF  A + + I+ L+E+   E
Sbjct: 347 IINARIKALNKIALKHQNHSFK-ALLNKPIKALVERKEGE 385


>gi|213416843|ref|ZP_03349987.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Salmonella enterica
           subsp. enterica serovar Typhi str. E01-6750]
          Length = 187

 Score =  113 bits (283), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 59/152 (38%), Positives = 94/152 (61%), Gaps = 1/152 (0%)

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
           II ++R+ RPDI ISSDFIVGFPGET DDF  TM L+  + +  ++SF +S R GTP ++
Sbjct: 2   IIRKLRAARPDIQISSDFIVGFPGETTDDFEKTMKLIADVNFDMSYSFIFSARPGTPAAD 61

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQ 436
           M++ V E  K +RL  LQ+++ +Q ++++   +G    +L+E   ++   +L GR+   +
Sbjct: 62  MVDDVPEEEKKQRLYILQERINQQAMAWSRRMLGTTQRILVEGTSRKNIMELSGRTENNR 121

Query: 437 SVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            V        IG  + V ITDV  ++L G++V
Sbjct: 122 VVNFEGTPEMIGKFVDVEITDVYPNSLRGKVV 153


>gi|238022285|ref|ZP_04602711.1| hypothetical protein GCWU000324_02192 [Kingella oralis ATCC 51147]
 gi|237866899|gb|EEP67941.1| hypothetical protein GCWU000324_02192 [Kingella oralis ATCC 51147]
          Length = 164

 Score =  113 bits (282), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 60/164 (36%), Positives = 92/164 (56%), Gaps = 1/164 (0%)

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           M R +TA EY+ II ++R++RPD+ +SSDFIVGFPGET+ +F  T+ LV  I +  +F F
Sbjct: 1   MKRGYTALEYKSIIRKLRAIRPDLCLSSDFIVGFPGETEREFEQTLKLVKDIAFDLSFVF 60

Query: 366 KYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKE 424
            YSPR GTP +N+ +      K  RL  L + +  +    N   +G +   L+E    K+
Sbjct: 61  IYSPRPGTPAANLPDDTPHEEKVRRLEALNEVIEAETARINQTMLGTVQRCLVEGISKKD 120

Query: 425 KGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
             +L  R+   + V        I  ++++ ITD +  +L GELV
Sbjct: 121 PDQLQARTANNRVVNFYGDVSLINQMVEIEITDARTFSLSGELV 164


>gi|154149538|ref|YP_001406090.1| hypothetical protein CHAB381_0502 [Campylobacter hominis ATCC
           BAA-381]
 gi|238065316|sp|A7I0P9|RIMO_CAMHC RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|153805547|gb|ABS52554.1| conserved hypothetical protein [Campylobacter hominis ATCC BAA-381]
          Length = 433

 Score =  112 bits (281), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 87/366 (23%), Positives = 176/366 (48%), Gaps = 22/366 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + F++S GC  N+ DS  M      + +E  +   +AD++++NTC     A ++    + 
Sbjct: 3   KVFLQSLGCNKNLVDSEIMLGAL--RDFEVTDIPKEADVLIVNTCGFINSAKQESIRAI- 59

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
               L+   I++ G +L V  GC+ Q   +E+++  P V++  G   +  + +++     
Sbjct: 60  ----LELCEIRKKGSILAV-TGCLMQRYKDELIKELPDVDIFSGVGDFGEIDKMIA---- 110

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           GK    +D +   K E   I    ++      A++ I EGC++ C+FC +P  +G   SR
Sbjct: 111 GKLSKFSDETFLQKNENRVITGTNFH------AYIKISEGCNQKCSFCAIPSFKGRLKSR 164

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            +  +V E   L++ G  + + + Q+ +++ G+ + G K     L+  + +I G+   R 
Sbjct: 165 DIQNIVSEVEMLVERGYYDFSFIAQDTSSF-GRDI-GLKNGLISLIKEIEKINGVKIARI 222

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
              +P   +  L++   D  V + Y  +P+Q  +D +LK M R +   E  +++  +R+ 
Sbjct: 223 LYLYPTTTNKELLQVIIDSPVFVNYFDMPIQHINDEMLKIMKRGNGKAEILELLQTMRAA 282

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
           +    + +  IVG PGE+++ F      + +  + +   F YS    T    M +Q+ +N
Sbjct: 283 KNSF-LRTGIIVGHPGESEEYFDELCRFLQEFKFDRISVFAYSKEEDTASFEM-KQIPQN 340

Query: 386 VKAERL 391
           +  +RL
Sbjct: 341 IIKKRL 346


>gi|317177437|dbj|BAJ55226.1| hypothetical protein HPF16_0629 [Helicobacter pylori F16]
          Length = 439

 Score =  112 bits (281), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 95/394 (24%), Positives = 181/394 (45%), Gaps = 31/394 (7%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ DS  M    ++  Y   N    AD+I++NTC   E A ++       I+ +
Sbjct: 13  SLGCSKNLVDSEVMLGKLYN--YTLTNDTKSADVILINTCGFIESAKQE------SIQTI 64

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
            N+   +    +++ +GC+++   +EI    P V++  G   Y ++  ++ +        
Sbjct: 65  LNAAKDKKRGAILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMIAKK------- 117

Query: 151 DTDYSVEDKFERLSIVDGGYNRK----RGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
                 +++F     +   YN +      V A++ I EGC++ C+FC +P  +G   SR 
Sbjct: 118 ------QNQFSEQVFLSEHYNARIITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSRE 171

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
           L  ++ E   L+  G  ++T + Q+ +++      G+K     L+ ++ + + L   R  
Sbjct: 172 LDSILKEVENLVLKGYTDMTFIAQDSSSFLYD--KGQKDGLIQLISAIDKQQALKSARIL 229

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
             +P   +  LI A     +   Y  +P+Q  SD +LK M R  +   + +++D ++ V+
Sbjct: 230 YLYPSSTTLELIGAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQVK 289

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
               I S  IVG P E + +F      +D+  + +   F +S    T   + LE+V + +
Sbjct: 290 ESF-IRSTIIVGHPEENEGEFEELSAFLDEFRFDRLNIFAFSAEENTHAYS-LEKVPKKI 347

Query: 387 KAERLLCLQK-KLREQQVSFNDACVGQIIEVLIE 419
              R+  L K  L+ Q  SF  A + + I+ L+E
Sbjct: 348 INARIKALNKIALKHQNNSFK-ALLNKPIKALVE 380


>gi|317178909|dbj|BAJ56697.1| hypothetical protein HPF30_0600 [Helicobacter pylori F30]
          Length = 439

 Score =  112 bits (280), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 96/394 (24%), Positives = 183/394 (46%), Gaps = 31/394 (7%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ DS  M    ++  Y   N    AD+I++NTC   E A ++       I+ +
Sbjct: 13  SLGCSKNLVDSEVMLGKLYN--YTLTNDTKSADVILINTCGFIESAKQE------SIQTI 64

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
            N+   +    +++V+GC+++   +EI    P V++  G   Y ++  ++ +        
Sbjct: 65  LNAAKDKKRGAILIVSGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMIAKK------- 117

Query: 151 DTDYSVEDKFERLSIVDGGYNRK----RGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
                 +++F     +   YN +      V A++ I EGC++ C+FC +P  +G   SR 
Sbjct: 118 ------QNQFSEQVFLSEHYNARIITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSRE 171

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
           L  ++ E   L+  G  ++T + Q+ +++      G+K     L+ ++ + + L   R  
Sbjct: 172 LDSILKEVENLVLKGYRDMTFIAQDSSSFLYD--KGQKDGLIQLIKAIDKQQALKSARIL 229

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
             +P   +  LI A     +   Y  +P+Q  SD +LK M R  +   + +++D ++ V+
Sbjct: 230 YLYPSSTTLELIGAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQVK 289

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
            +  I S  IVG P E + +F      +D+  + +   F +S    T   + LE+V + +
Sbjct: 290 -ECFIRSTIIVGHPEENEGEFEELSAFLDEFRFDRLNIFAFSAEENTHAYS-LEKVPKKI 347

Query: 387 KAERLLCLQK-KLREQQVSFNDACVGQIIEVLIE 419
              R+  L K  L+ Q  SF  A + + I+ L+E
Sbjct: 348 INARIKALNKIALKHQNNSFK-ALLNKPIKALVE 380


>gi|109947260|ref|YP_664488.1| putative 2-methylthioadenine synthetase [Helicobacter acinonychis
           str. Sheeba]
 gi|123066258|sp|Q17XY7|RIMO_HELAH RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|109714481|emb|CAJ99489.1| putative 2-methylthioadenine synthetase [Helicobacter acinonychis
           str. Sheeba]
          Length = 438

 Score =  112 bits (280), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 96/394 (24%), Positives = 182/394 (46%), Gaps = 31/394 (7%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ DS  M    ++  Y   N    AD+I++NTC   E A ++       I+ +
Sbjct: 12  SLGCSKNLVDSEVMLGKLYN--YTLTNDAKSADVILINTCGFIESAKQE------SIQTI 63

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
            N+   +    L++ +GC+++   +EI    P V++  G   Y ++  L+ +        
Sbjct: 64  LNAAKDKKEGTLLIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDILIAKK------- 116

Query: 151 DTDYSVEDKFERLSIVDGGYNRK----RGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
                 +++F     +   YN +      V A++ I EGC++ C+FC +P  +G   SR 
Sbjct: 117 ------QNQFSEQVFLSEHYNARVITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLHSRE 170

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
           L  ++ E   L+  G  ++T + Q+ +++      G+K     L+ ++ + + L   R  
Sbjct: 171 LDSILKEVEDLVLKGYKDMTFIAQDSSSFLYD--KGQKDGLIQLISAIDKQQALRSARIL 228

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
             +P   +  LI A  +  +   Y  +P+Q  SD +LK M R  +   + ++++ ++ V+
Sbjct: 229 YLYPSSTTLELIGAIENSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLNAMKQVQ 288

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
               I S  IVG P E + +F      +D+  + +   F +S    T   + LE+V + +
Sbjct: 289 ESF-IRSTIIVGHPEENEGEFEELSAFLDEFQFDRLNIFAFSAEENTHAYS-LEKVPKKI 346

Query: 387 KAERLLCLQK-KLREQQVSFNDACVGQIIEVLIE 419
              R+  L K  L+ Q  SF  A + + I+ L+E
Sbjct: 347 INARIKALNKIALKHQHNSFK-ALLNKPIKALVE 379


>gi|188527423|ref|YP_001910110.1| hypothetical protein HPSH_03170 [Helicobacter pylori Shi470]
 gi|238066306|sp|B2UT98|RIMO_HELPS RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|188143663|gb|ACD48080.1| hypothetical protein HPSH_03170 [Helicobacter pylori Shi470]
          Length = 439

 Score =  112 bits (280), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 95/394 (24%), Positives = 180/394 (45%), Gaps = 31/394 (7%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ DS  M    ++  Y   N    AD+I++NTC   E A ++       I+ +
Sbjct: 13  SLGCSKNLVDSEVMLGKLYN--YTLTNDTKSADVILINTCGFIESAKQE------SIQTI 64

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
            N+   +    +++ +GC+++   +EI    P V++  G   Y ++  ++ +        
Sbjct: 65  LNAAKDKKKGAILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMIAKK------- 117

Query: 151 DTDYSVEDKFERLSIVDGGYNRK----RGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
                 +++F     +   YN +      V A++ I EGC++ C+FC +P  +G   SR 
Sbjct: 118 ------QNQFSEQVFLSEHYNARIITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSRE 171

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
           L  ++ EA  L   G  ++T + Q+ +++      G+K     L+ ++ + + L   R  
Sbjct: 172 LDSILKEAENLALKGYTDMTFIAQDSSSFLYD--KGQKDGLIQLISAIDKQQALKSARIL 229

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
             +P   +  LI       +   Y  +P+Q  SD +LK M R  +   + +++D ++ V+
Sbjct: 230 YLYPSSTTLELISTIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQVK 289

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
               I S  IVG P E + +F      +D+  + +   F +S    T   + LE+V + +
Sbjct: 290 ESF-IRSTIIVGHPEENEGEFEELSAFLDEFRFDRLNIFAFSAEENTHAYS-LEKVPKKI 347

Query: 387 KAERLLCLQK-KLREQQVSFNDACVGQIIEVLIE 419
              R+  L K  L+ Q  SF  A + + I+ L+E
Sbjct: 348 INARIKALNKIALKHQNNSFK-ALLNKPIKALVE 380


>gi|317014146|gb|ADU81582.1| hypothetical protein HPGAM_03795 [Helicobacter pylori Gambia94/24]
          Length = 439

 Score =  112 bits (280), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 100/395 (25%), Positives = 182/395 (46%), Gaps = 33/395 (8%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA-EKVYSFLGRIRN 89
           S GC  N+ DS  M    ++  Y   N    AD+I++NTC   E A  E + + L   ++
Sbjct: 13  SLGCSKNLVDSEVMLGKLYN--YTLTNDAKKADVILINTCGFIESAKQESIQTILNAAKD 70

Query: 90  LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149
            K     EG   +++ +GC+++   +EI    P V++  G   Y ++  L+ +       
Sbjct: 71  KK-----EGA--ILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDILIAKK------ 117

Query: 150 VDTDYSVEDKFERLSIVDGGYNRK----RGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                  +++F     +   YN +      V A++ I EGC++ C+FC +P  +G   SR
Sbjct: 118 -------QNQFSEQVFLSEHYNARIITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSR 170

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            L  ++ E   L   G  ++T + Q+ +++      G+K     L+ ++ + + L   R 
Sbjct: 171 ELDSILKEVEDLALKGYKDMTFIAQDSSSFLYD--KGQKDGLIQLIKAIDKQQALKSARI 228

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
              +P   +  LI A  D  V   Y  +P+Q  SD +LK M R  +   + ++++ ++ V
Sbjct: 229 LYLYPSSTTLELIGAIEDSPVFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLNAMKQV 288

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
           +    I S  IVG P E + +F      +D+  + +   F +S    T   + LE+V + 
Sbjct: 289 KESF-IRSTIIVGHPEENEGEFEELSAFLDEFQFDRLNIFAFSAEESTHAYS-LEKVPKK 346

Query: 386 VKAERLLCLQK-KLREQQVSFNDACVGQIIEVLIE 419
           +   R+  L K  L+ Q  SF  A + + I+ L+E
Sbjct: 347 IINARIKVLNKIALKHQNHSFK-ALLNKPIKALVE 380


>gi|297379931|gb|ADI34818.1| MiaB-like tRNA modifying enzyme YliG [Helicobacter pylori v225d]
          Length = 439

 Score =  111 bits (278), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 96/399 (24%), Positives = 181/399 (45%), Gaps = 31/399 (7%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ DS  M    ++  Y   N    AD+I++NTC   E A ++       I+ +
Sbjct: 13  SLGCSKNLVDSEVMLGKLYN--YTLTNDTKSADVILINTCGFIESAKQE------SIQTI 64

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
            N+   +    +++ +GC+++   +EI    P V++  G   Y ++  ++ +        
Sbjct: 65  LNAAKDKKKGAILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMIAKK------- 117

Query: 151 DTDYSVEDKFERLSIVDGGYNRK----RGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
                 +++F     +   YN +      V A++ I EGC++ C+FC +P  +G   SR 
Sbjct: 118 ------QNQFSEQVFLSEHYNARIITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSRE 171

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
           L  ++ E   L   G  ++T + Q+ +++      G+K     L+ ++ + + L   R  
Sbjct: 172 LDSILKEVEDLALKGYTDMTFIAQDSSSFLYD--KGQKDGLIQLIRAIDKQQALKSARIL 229

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
             +P   +  LI A     +   Y  +P+Q  SD +LK M R  +   + +++D ++ V+
Sbjct: 230 YLYPSSTTLELIGAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQVK 289

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
               I S  IVG P E + +F      +D+  + +   F +S    T   + LE+V + +
Sbjct: 290 ESF-IRSTIIVGHPEENEGEFEELSAFLDEFRFDRLNIFAFSAEENTHAYS-LEKVPKKI 347

Query: 387 KAERLLCLQK-KLREQQVSFNDACVGQIIEVLIEKHGKE 424
              R+  L K  L+ Q  SF  A + + I+ L+E    E
Sbjct: 348 INARIKALNKIALKHQNNSFK-ALLNKPIKALVENKESE 385


>gi|15611738|ref|NP_223389.1| hypothetical protein jhp0671 [Helicobacter pylori J99]
 gi|81625904|sp|Q9ZLA9|RIMO_HELPJ RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|4155233|gb|AAD06255.1| putative [Helicobacter pylori J99]
          Length = 439

 Score =  111 bits (278), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 99/395 (25%), Positives = 182/395 (46%), Gaps = 33/395 (8%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA-EKVYSFLGRIRN 89
           S GC  N+ DS  M    ++  Y   N    AD+I++NTC   E A  E + + L   ++
Sbjct: 13  SLGCSKNLVDSEVMLGKLYN--YTLTNDAKKADVILINTCGFIESAKQESIQTILNAAKD 70

Query: 90  LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149
            K     EG   +++ +GC+++   +EI    P V++  G   Y ++  L+ +       
Sbjct: 71  KK-----EGA--ILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDILIAKK------ 117

Query: 150 VDTDYSVEDKFERLSIVDGGYNRK----RGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                  +++F     +   YN +      V A++ I EGC++ C+FC +P  +G   SR
Sbjct: 118 -------QNQFSEQVFLSEHYNARIITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSR 170

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            L  ++ E   L   G  ++T + Q+ +++      G+K     L+ ++ + + L   R 
Sbjct: 171 ELDSILKEVEDLALKGYKDMTFIAQDSSSFLYD--KGQKDGLIQLIRAIDKQQALKSARI 228

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
              +P   +  LI A  D  +   Y  +P+Q  SD +LK M R  +   + ++++ ++ V
Sbjct: 229 LYLYPSSTTLELIGAIEDSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLNAMKQV 288

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
           +    I S  IVG P E + +F      +D+  + +   F +S    T   + LE+V + 
Sbjct: 289 KESF-IRSTIIVGHPEENESEFEELSAFLDEFRFDRLNIFAFSAEENTHAYS-LEKVPKK 346

Query: 386 VKAERLLCLQK-KLREQQVSFNDACVGQIIEVLIE 419
           +   R+  L K  L+ Q  SF  A + + I+ L+E
Sbjct: 347 IINARIKALNKIALKHQNHSFK-ALLNKPIKALVE 380


>gi|156337861|ref|XP_001619903.1| hypothetical protein NEMVEDRAFT_v1g149881 [Nematostella vectensis]
 gi|156203943|gb|EDO27803.1| predicted protein [Nematostella vectensis]
          Length = 202

 Score =  111 bits (277), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 64/209 (30%), Positives = 105/209 (50%), Gaps = 17/209 (8%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C   CT+C   + RG   S    ++V+ A++  + GV E+ L  ++  A+ GK +     
Sbjct: 1   CLNQCTYCKTKHARGDLGSYPPEEIVNRAKQAFNEGVVEMWLTSEDTGAY-GKDIG---V 56

Query: 246 TFSDLLYSLSEIK--------GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQS 297
           T  +LL+ L ++         G+    Y   H  +M+  L         +  +LH+PVQS
Sbjct: 57  TLPELLWQLVKVIPEGGRMRIGMTNPPYILEHLEEMAKILNHPR-----VYSFLHVPVQS 111

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
            S  +L  M R + A ++  +++ +R   PD+ I++D I GFP ET+DDF+ T+DLV K 
Sbjct: 112 ASTNVLADMKREYIAEDFEHVVNYLRQRVPDLTIATDLICGFPTETEDDFQKTLDLVKKY 171

Query: 358 GYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
            +   F  ++ PR GTP + M     E V
Sbjct: 172 KFPSLFINQFYPRPGTPAARMKRLPTEEV 200


>gi|317182043|dbj|BAJ59827.1| hypothetical protein HPF57_0753 [Helicobacter pylori F57]
          Length = 439

 Score =  111 bits (277), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 95/394 (24%), Positives = 180/394 (45%), Gaps = 31/394 (7%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ DS  M    ++  Y   N    AD+I++NTC   E A ++       I+ +
Sbjct: 13  SLGCSKNLVDSEVMLGKLYN--YTLTNDAKSADVILINTCGFIESAKQE------SIQTI 64

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
            N+   +    +++ +GC+++   +EI    P V++  G   Y ++  ++ +        
Sbjct: 65  LNAAKDKKKGAILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMIAKK------- 117

Query: 151 DTDYSVEDKFERLSIVDGGYNRK----RGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
                 +++F     +   YN +      V A++ I EGC++ C+FC +P  +G   SR 
Sbjct: 118 ------QNQFSEQVFLSEHYNARIITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSRE 171

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
           L  ++ E   L   G  ++T + Q+ +++      G+K     L+ ++ + + L   R  
Sbjct: 172 LDSILKEVEDLALKGYTDMTFIAQDSSSFLYD--KGQKDGLIQLISAIDKQQALKSTRIL 229

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
             +P   +  LI A     +   Y  +P+Q  SD +LK M R  +   + +++D ++ V+
Sbjct: 230 YLYPSSTTLELIGAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQVK 289

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
               I S  IVG P E + +F      +D+  + +   F +S    T   + LE+V + +
Sbjct: 290 ESF-IRSTIIVGHPEENEGEFEELSAFLDEFRFDRLNIFAFSAEENTHAYS-LEKVPKKI 347

Query: 387 KAERLLCLQK-KLREQQVSFNDACVGQIIEVLIE 419
              R+  L K  L+ Q  SF  A + + I+ L+E
Sbjct: 348 INARIKALNKIALKHQNNSFK-ALLNKPIKALVE 380


>gi|308063481|gb|ADO05368.1| hypothetical protein HPSAT_03125 [Helicobacter pylori Sat464]
          Length = 439

 Score =  111 bits (277), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 95/394 (24%), Positives = 181/394 (45%), Gaps = 31/394 (7%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ DS  M    ++  Y   N    AD+I++NTC   E A ++       I+ +
Sbjct: 13  SLGCSKNLVDSEVMLGKLYN--YTLTNDTKSADVILINTCGFIESAKQE------SIQTI 64

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
            N+   +    +++ +GC+++   +EI    P V++  G   Y ++  ++ +        
Sbjct: 65  LNAAKDKKRGAILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMIAKK------- 117

Query: 151 DTDYSVEDKFERLSIVDGGYNRK----RGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
                 +++F     +   YN +      V A++ I EGC++ C+FC +P  +G   SR 
Sbjct: 118 ------QNQFSEQVFLSEHYNARIITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSRE 171

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
           L  ++ E + L   G  ++T + Q+ +++      G+K     L+ ++ + + L   R  
Sbjct: 172 LDSILKEVQDLALKGYTDMTFIAQDSSSFLYD--KGQKDGLIQLISAIDKQQALKSARIL 229

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
             +P   +  LI A     +   Y  +P+Q  SD +LK M R  +   + +++D ++ V+
Sbjct: 230 YLYPSSTTLELIGAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQVK 289

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
               I S  IVG P E + +F      +D+  + +   F +S    T   + LE+V + +
Sbjct: 290 ESF-IRSTIIVGHPEENEGEFEELSAFLDEFRFDRLNIFAFSAEENTHAYS-LEKVPKKI 347

Query: 387 KAERLLCLQK-KLREQQVSFNDACVGQIIEVLIE 419
              R+  L K  L+ Q  SF  A + + I+ L+E
Sbjct: 348 INARIKALNKIALKHQNNSFK-ALLNKPIKALVE 380


>gi|261838033|gb|ACX97799.1| hypothetical protein KHP_0592 [Helicobacter pylori 51]
          Length = 439

 Score =  111 bits (277), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 96/399 (24%), Positives = 181/399 (45%), Gaps = 31/399 (7%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ DS  M    ++  Y   N    AD+I++NTC   E A ++       I+ +
Sbjct: 13  SLGCSKNLVDSEVMLGKLYN--YTLTNDTKSADVILINTCGFIESAKQE------SIQTI 64

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
            N+   +    +++ +GC+++   +EI    P V++  G   Y ++  ++ +        
Sbjct: 65  LNAAKDKKKGAILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMIAKK------- 117

Query: 151 DTDYSVEDKFERLSIVDGGYNRK----RGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
                 +++F     +   YN +      V A++ I EGC++ C+FC +P  +G   SR 
Sbjct: 118 ------QNQFSEQVFLSEHYNARIITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSRE 171

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
           L  ++ E   L   G  ++T + Q+ +++      G+K     L+ ++ + + L   R  
Sbjct: 172 LDSILKEVEDLALKGYTDMTFIAQDSSSFLYD--KGQKDGLIQLISAIDKQQALKSGRIL 229

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
             +P   +  LI A     +   Y  +P+Q  SD +LK M R  +   + +++D ++ V+
Sbjct: 230 YLYPSSTTLELIGAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQVK 289

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
               I S  IVG P E + +F      +D+  + +   F +S    T   + LE+V + +
Sbjct: 290 ESF-IRSTIIVGHPEENEGEFEELSAFLDEFRFDRLNIFAFSAEENTHAYS-LEKVSKKI 347

Query: 387 KAERLLCLQK-KLREQQVSFNDACVGQIIEVLIEKHGKE 424
              R+  L K  L+ Q  SF  A + + I+ L+E    E
Sbjct: 348 INARIKALNKIALKHQNNSFK-ALLNKPIKALVENKESE 385


>gi|317010954|gb|ADU84701.1| putative 2-methylthioadenine synthetase [Helicobacter pylori
           SouthAfrica7]
          Length = 438

 Score =  111 bits (277), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 96/394 (24%), Positives = 181/394 (45%), Gaps = 31/394 (7%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ DS  M    ++  Y   N   +AD+I++NTC   E A ++       I+ +
Sbjct: 12  SLGCSKNLVDSEVMLGKLYN--YTLTNDAKNADVILINTCGFIESAKQE------SIQTI 63

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
            N+   +    L++ +GC+++   +EI    P V++  G   Y ++  L+ +        
Sbjct: 64  LNAAKDKKKGALLIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDILIAKK------- 116

Query: 151 DTDYSVEDKFERLSIVDGGYNRK----RGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
                 +++F     +   YN +      V A++ I EGC++ C+FC +P  +G   SR 
Sbjct: 117 ------QNQFSEQVFLSEHYNARIITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLHSRE 170

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
           L  ++ E   L   G  ++T + Q+ +++      G+K     L+ ++ + + L   R  
Sbjct: 171 LDSILKEVEDLALKGYKDMTFIAQDSSSFLYD--KGQKDGLIQLIKAIDKQQALKSARIL 228

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
             +P   +  LI A     +   Y  +P+Q  SD +LK M R  +   + ++++ ++ V+
Sbjct: 229 YLYPSSTTLELIGAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLNAMKQVQ 288

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
               I S  IVG P E + +F      +D+  + +   F +S    T   + LE+V + +
Sbjct: 289 ESF-IRSTIIVGHPEENEGEFEELSAFLDEFQFDRLNIFAFSAEENTHAYS-LEKVPKKI 346

Query: 387 KAERLLCLQK-KLREQQVSFNDACVGQIIEVLIE 419
              R+  L K  L+ Q  SF  A + + I+ L+E
Sbjct: 347 INARIKALNKIALKHQNNSFK-ALLNKPIKALVE 379


>gi|257076152|ref|ZP_05570513.1| oxidoreductase [Ferroplasma acidarmanus fer1]
          Length = 400

 Score =  111 bits (277), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 114/426 (26%), Positives = 198/426 (46%), Gaps = 63/426 (14%)

Query: 26  RFFVKSYGCQMNVYDS-LRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + + +SYGC +   +S L +  +   +  + VNS ++ADL ++ TC + +   +++   +
Sbjct: 2   KIYFESYGCTLQKSESSLYLNKLLKDENNQIVNSPEEADLSLIGTCVVIKHTEDRM---V 58

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            RI +L     K  G+  V V GC+A   G  I   S  V V+  P+ +    E      
Sbjct: 59  KRISSLS----KVSGN--VQVLGCLATVNGNTI--ESGNVQVL-KPREFRSFYE------ 103

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
                 D D  +E K +   I DG           + I +GC   C FC+    RG  +S
Sbjct: 104 -----GDLD-GIEIKSD---IYDG-----------IPINQGCTGSCNFCISHIARGKLLS 143

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R + ++V++    +D  + EI +   +  A+ GK +  +    ++L+  +S I     LR
Sbjct: 144 RGIDKIVNQVNMELDRNIKEIRISSLDTAAY-GKDIGTD---LAELVNRISSIDRDFYLR 199

Query: 265 YTTSHPR---DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
                PR   D+ D L+ A+   D +  +LHLPVQS  + +L +MNR +T  E   +  +
Sbjct: 200 VGMLEPRNTYDILDKLVDAYRH-DRVFKFLHLPVQSAENNVLSAMNREYTIEEAEAVWQK 258

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP------- 374
                PD++I++D I+G+  ++   F  TM  ++K         ++SPR  T        
Sbjct: 259 FHDAFPDMSIATDIILGYYNDSRAGFEKTMKFLEKYNPDIINVTRFSPRPYTKDYNKTPL 318

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPW 434
            SN+L++    + +     ++KKL        D+ +G+  +VLI + GK  G +VGR   
Sbjct: 319 NSNLLKEWSNEIISLHREQMEKKL--------DSYLGREEKVLITEKGK-NGTMVGRDIN 369

Query: 435 LQSVVL 440
            + VVL
Sbjct: 370 YRPVVL 375


>gi|68249225|ref|YP_248337.1| 2-methylthioadenine synthetase [Haemophilus influenzae 86-028NP]
 gi|68057424|gb|AAX87677.1| predicted 2-methylthioadenine synthetase [Haemophilus influenzae
           86-028NP]
          Length = 218

 Score =  110 bits (276), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 74/215 (34%), Positives = 120/215 (55%), Gaps = 17/215 (7%)

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
           VRL Y   +P    D LI    D   L+PYL +P+Q  S +ILK+M R  +     + I 
Sbjct: 9   VRLHYVYPYPH--VDDLIPLMAD-GTLLPYLDIPLQHASPKILKAMKRPGSIDRTLERIK 65

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           + R + PD+ + S FIVGFPGET++DF+  +D + +    +   FK+SP  G P ++M +
Sbjct: 66  QWREICPDLTLRSTFIVGFPGETEEDFQLLLDFLKEAQLDRVGCFKFSPVEGAPATDMAD 125

Query: 381 QVDENVKAERLLCLQKKLREQQVSFN--DACVGQIIEVLIEKHGKEKGKLVGRS----PW 434
           QV E+VK ER     +   +Q++S N     +G+ ++VL+++   ++  ++GRS    P 
Sbjct: 126 QVPEDVKEERFHRFMQ--LQQEISANRLKQKIGKTLDVLVDE--IDEDGIIGRSKADAPE 181

Query: 435 LQSVV----LNSKNHNIGDIIKVRITDVKISTLYG 465
           +  +V    L+  N  +GD+IKV IT+     L+G
Sbjct: 182 VDGLVYVDNLSGINVKVGDVIKVTITNSDEYDLWG 216


>gi|317180496|dbj|BAJ58282.1| hypothetical protein HPF32_0700 [Helicobacter pylori F32]
          Length = 439

 Score =  110 bits (276), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 95/394 (24%), Positives = 181/394 (45%), Gaps = 31/394 (7%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ DS  M    ++  Y   N    AD+I++NTC   E A ++       I+ +
Sbjct: 13  SLGCSKNLVDSEVMLGKLYN--YTLTNDTKSADVILINTCGFIESAKQE------SIQTI 64

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
            N+   +    +++ +GC+++   +EI    P V++  G   Y ++  ++ +        
Sbjct: 65  LNAAKDKKKGAILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMIAKK------- 117

Query: 151 DTDYSVEDKFERLSIVDGGYNRK----RGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
                 +++F     +   YN +      V A++ I EGC++ C+FC +P  +G   SR 
Sbjct: 118 ------QNQFSEQVFLSEHYNARIITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSRE 171

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
           L  ++ EA  L   G  ++T + Q+ +++      G+K     L+ ++ + + L   R  
Sbjct: 172 LDSILKEAENLALKGYKDMTFIAQDSSSFLYD--KGQKDGLIQLISAIDKQQALKSARIL 229

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
             +P   +  LI A     +   Y  +P+Q  SD +LK M R  +   + ++++ ++ V+
Sbjct: 230 YLYPSSTTLELIGAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLNAMKQVK 289

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
               I S  IVG P E + +F      +D+  + +   F +S    T   + LE+V + +
Sbjct: 290 ESF-IRSTIIVGHPEENESEFEELSAFLDEFRFDRLNIFAFSAEENTHAYS-LEKVPKKI 347

Query: 387 KAERLLCLQK-KLREQQVSFNDACVGQIIEVLIE 419
              R+  L K  L+ Q  SF  A + + I+ L+E
Sbjct: 348 INARIKALNKIALKHQNHSFK-ALLNKPIKALVE 380


>gi|15645354|ref|NP_207528.1| hypothetical protein HP0734 [Helicobacter pylori 26695]
 gi|81555823|sp|O25434|RIMO_HELPY RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|2313856|gb|AAD07780.1| conserved hypothetical protein [Helicobacter pylori 26695]
          Length = 439

 Score =  110 bits (276), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 98/395 (24%), Positives = 180/395 (45%), Gaps = 33/395 (8%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA-EKVYSFLGRIRN 89
           S GC  N+ DS  M    ++  Y   N    AD+I++NTC   E A  E + + L   ++
Sbjct: 13  SLGCSKNLVDSEVMLGKLYN--YTLTNDAKSADVILINTCGFIESAKQESIQTILNAAKD 70

Query: 90  LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149
            K     EG   +++ +GC+++   +EI    P V++  G   Y ++  ++ +       
Sbjct: 71  KK-----EGA--ILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMIAKK------ 117

Query: 150 VDTDYSVEDKFERLSIVDGGYNRK----RGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                  +++F     +   YN +      V A++ I EGC++ C+FC +P  +G   SR
Sbjct: 118 -------QNQFSEQVFLSEHYNARIITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSR 170

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            L  ++ E   L   G  ++T + Q+ +++      G+K     L+ ++ + + L   R 
Sbjct: 171 ELDSILKEVENLALKGYTDMTFIAQDSSSFLYD--KGQKDGLIQLIRAIDKQQALKSARI 228

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
              +P   +  LI A     +   Y  +P+Q  SD +LK M R  +   + +++D ++ V
Sbjct: 229 LYLYPSSTTLELIGAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQV 288

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
           +    I S  IVG P E + +F      +D+  + +   F +S    T   + LE+V + 
Sbjct: 289 KESF-IRSTIIVGHPEENESEFEELSAFLDEFQFDRLNIFAFSAEENTHAYS-LEKVPKK 346

Query: 386 VKAERLLCLQK-KLREQQVSFNDACVGQIIEVLIE 419
               R+  L K  L+ Q  SF  A + + I+ L+E
Sbjct: 347 TINARIKALNKIALKHQNHSFK-ALLNKPIKALVE 380


>gi|332673464|gb|AEE70281.1| possible 2-methylthioadenine synthetase [Helicobacter pylori 83]
          Length = 451

 Score =  110 bits (276), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 95/394 (24%), Positives = 181/394 (45%), Gaps = 31/394 (7%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ DS  M    ++  Y   N    AD+I++NTC   E A ++       I+ +
Sbjct: 13  SLGCSKNLVDSEVMLGKLYN--YTLTNDAKSADVILINTCGFIESAKQE------SIQTI 64

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
            N+   +    +++ +GC+++   +EI    P V++  G   Y ++  ++ +        
Sbjct: 65  LNAAKDKKKGAILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMIAKK------- 117

Query: 151 DTDYSVEDKFERLSIVDGGYNRK----RGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
                 +++F     +   YN +      V A++ I EGC++ C+FC +P  +G   SR 
Sbjct: 118 ------QNQFSEQVFLSEHYNARIITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSRE 171

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
           L  ++ E   L   G  ++T + Q+ +++      G+K     L+ ++ + + L   R  
Sbjct: 172 LDSILKEVEDLALKGYTDMTFIAQDSSSFLYD--KGQKDGLIQLISAIDKQQALKSARIL 229

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
             +P   +  LI A     +   Y  +P+Q  SD +LK M R  +   + +++D ++ V+
Sbjct: 230 YLYPSSTTLELIGAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQVK 289

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
            +  I S  IVG P E + +F      +D+  + +   F +S    T   + LE+V + +
Sbjct: 290 -ECFIRSTIIVGHPEENEGEFEELSAFLDEFRFDRLNIFAFSAEENTHAYS-LEKVPKKI 347

Query: 387 KAERLLCLQK-KLREQQVSFNDACVGQIIEVLIE 419
              R+  L K  L+ Q  SF  A + + I+ L+E
Sbjct: 348 INARIKALNKIALKHQNNSFK-ALLNKPIKALVE 380


>gi|322379439|ref|ZP_08053809.1| Radical SAM [Helicobacter suis HS1]
 gi|322380950|ref|ZP_08055016.1| MiaB-like rRNA/tRNA modification protein [Helicobacter suis HS5]
 gi|321146622|gb|EFX41456.1| MiaB-like rRNA/tRNA modification protein [Helicobacter suis HS5]
 gi|321148148|gb|EFX42678.1| Radical SAM [Helicobacter suis HS1]
          Length = 419

 Score =  110 bits (276), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 112/454 (24%), Positives = 209/454 (46%), Gaps = 43/454 (9%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           ++ Q+ + K++GC+ N++D+  M  +   + +E  N  ++A +I+LN+C +   A     
Sbjct: 1   MMKQKVYFKTFGCRTNLFDTQVM--LAHLKDFETTNHEEEAQIIILNSCTVTNDADYSAR 58

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S+  +   L            V   GC A  +G ++ +   +  V  G      +  LL+
Sbjct: 59  SYAKKATRLGKK---------VYFTGCGANTQGLQLFQNGHVFGVF-GHDHKEEINALLQ 108

Query: 142 RARFGKRVVDTDYSVEDKFERLS--IVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
             +         +  EDK E L   ++     + R   AF+ IQEGCD  C++C++P  R
Sbjct: 109 EKQ--------GFFHEDKQECLDQILLSNFVGKTR---AFVKIQEGCDFRCSYCIIPTVR 157

Query: 200 GIEISRSLSQ--VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257
           G   SRSL+Q  V+ +   L   GV E+ L G NV ++   GLD      + L+  ++++
Sbjct: 158 G--QSRSLNQDHVLKQIEMLSQAGVLEVVLTGTNVGSY---GLD-RGTNLAHLILKIADL 211

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
             + R+R  +  P  ++   ++   D  +L  +LH+ +Q   D +L+ M RR+      +
Sbjct: 212 TPIKRVRIGSLEPSQINTEFLEL-LDHPILERHLHIALQHSHDNMLRRMRRRNRVGSDIK 270

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
           ++++I S     AI +DFIVG P E +  ++  +    ++       F YS R  TP S 
Sbjct: 271 LLEKIAS--KGFAIGTDFIVGHPYEDELTWQEALLNFKQLPLTHIHPFIYSVRDNTPSSK 328

Query: 378 ML--EQVDENVKAERLLCLQKKLREQQVSFNDACVG--QIIEVLIEKHGKEKGKLVGRSP 433
           M    +V  N+   RL  ++  +  Q ++F        +++EV++E       +  G   
Sbjct: 329 MPLNARVPGNIAKTRLDQIKTHVIAQNLAFRQQLKANREVLEVIVENFKAPYYR--GYDQ 386

Query: 434 WLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
           +   V + SK  N+  ++ +   +V+    Y  L
Sbjct: 387 YFNPVKILSKQ-NLQGLVYLNTYEVRADANYATL 419


>gi|254779289|ref|YP_003057394.1| hypothetical protein HELPY_0633 [Helicobacter pylori B38]
 gi|254001200|emb|CAX29166.1| Conserved hypothetical protein [Helicobacter pylori B38]
          Length = 439

 Score =  110 bits (276), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 99/395 (25%), Positives = 181/395 (45%), Gaps = 33/395 (8%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA-EKVYSFLGRIRN 89
           S GC  N+ DS  M    ++  Y   N    AD+I++NTC   E A  E + + L   ++
Sbjct: 13  SLGCSKNLVDSEVMLGKLYN--YTLTNDAKKADVILINTCGFIESAKQESIQTILNAAKD 70

Query: 90  LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149
            K     EG   +++ +GC+++   +EI    P V++  G   Y ++  L+ +       
Sbjct: 71  KK-----EGA--ILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDILIAKK------ 117

Query: 150 VDTDYSVEDKFERLSIVDGGYNRK----RGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                  +++F     +   YN +      V A++ I EGC++ C+FC +P  +G   SR
Sbjct: 118 -------QNQFSEQVFLSEHYNARIITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSR 170

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            L  ++ E   L   G  ++T + Q+ +++      G+K     L+ ++ + + L   R 
Sbjct: 171 ELDSILKEVEDLALKGYKDMTFIAQDSSSFLYD--KGQKDGLIQLIKAIDKQQALKSARI 228

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
              +P   +  LI    D  +   Y  +P+Q  SD +LK M R  +   + +++D ++ V
Sbjct: 229 LYLYPSSTTLELIGTIEDSLIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQV 288

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
           +    I S  IVG P E + +F      +D+  + +   F +S    T   + LE+V + 
Sbjct: 289 KESF-IRSTIIVGHPEENEGEFEELSAFLDEFRFDRLNIFAFSAEENTHAYS-LEKVPKK 346

Query: 386 VKAERLLCLQK-KLREQQVSFNDACVGQIIEVLIE 419
           +   R+  L K  L+ Q  SF  A + + I+ L+E
Sbjct: 347 IINARIKALNKIALKHQNHSFK-ALLNKPIKALVE 380


>gi|261839446|gb|ACX99211.1| hypothetical protein HPKB_0614 [Helicobacter pylori 52]
          Length = 439

 Score =  110 bits (276), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 95/394 (24%), Positives = 180/394 (45%), Gaps = 31/394 (7%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ DS  M    ++  Y   N    AD+I++NTC   E A ++       I+ +
Sbjct: 13  SLGCSKNLVDSEVMLGKLYN--YTLTNDTKSADVILINTCGFIESAKQE------SIQTI 64

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
            N+   +    +++ +GC+++   +EI    P V++  G   Y ++  ++ +        
Sbjct: 65  LNAAKDKKKGAILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMIAKK------- 117

Query: 151 DTDYSVEDKFERLSIVDGGYNRK----RGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
                 +++F     +   YN +      V A++ I EGC++ C+FC +P  +G   SR 
Sbjct: 118 ------QNQFSEQVFLSEHYNARIITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSRE 171

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
           L  ++ E   L   G  ++T + Q+ +++      G+K     L+ ++ + + L   R  
Sbjct: 172 LDSILKEVENLALKGYTDMTFIAQDSSSFLYD--KGQKDGLIQLIKAIDKQQALKSGRIL 229

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
             +P   +  LI A     +   Y  +P+Q  SD +LK M R  +   + +++D ++ V+
Sbjct: 230 YLYPSSTTLELIGAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQVK 289

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
               I S  IVG P E + +F      +D+  + +   F +S    T   + LE+V + +
Sbjct: 290 ESF-IRSTIIVGHPEENEGEFEELSAFLDEFRFDRLNIFAFSAEENTHAYS-LEKVPKKI 347

Query: 387 KAERLLCLQK-KLREQQVSFNDACVGQIIEVLIE 419
              R+  L K  L+ Q  SF  A + + I+ L+E
Sbjct: 348 INARIKALNKIALKHQNNSFK-ALLNKPIKALVE 380


>gi|317012545|gb|ADU83153.1| hypothetical protein HPLT_03685 [Helicobacter pylori Lithuania75]
          Length = 439

 Score =  110 bits (276), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 99/395 (25%), Positives = 180/395 (45%), Gaps = 33/395 (8%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA-EKVYSFLGRIRN 89
           S GC  N+ DS  M    ++  Y   N    AD+I++NTC   E A  E + + L   ++
Sbjct: 13  SLGCSKNLVDSEVMLGKLYN--YTLTNDAKSADVILINTCGFIESAKQESIQTILNAAKD 70

Query: 90  LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149
            K     EG   +++ +GC+++   +EI    P V++  G   Y ++  L+ +       
Sbjct: 71  KK-----EGA--ILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDILIAKK------ 117

Query: 150 VDTDYSVEDKFERLSIVDGGYNRK----RGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                  +++F     +   YN +      V A++ I EGC++ C+FC +P  +G   SR
Sbjct: 118 -------QNQFSEQVFLSEHYNARIITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSR 170

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            L  ++ E   L   G  ++T + Q+ +++      G+K     L+ ++ + + L   R 
Sbjct: 171 ELDSILKEVEDLALKGYKDMTFIAQDSSSFLYD--KGQKDGLIQLIRAIDKQQALKSARI 228

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
              +P   +  LI A     +   Y  +P+Q  SD +LK M R  +   + +++D ++ V
Sbjct: 229 LYLYPSSTTLELISAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQV 288

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
           +    I S  IVG P E + +F      +D+  + +   F +S    T   + LE+V + 
Sbjct: 289 KESF-IRSTIIVGHPEENEGEFEELSAFLDEFCFDRLNIFAFSAEENTHAYS-LEKVPKK 346

Query: 386 VKAERLLCLQK-KLREQQVSFNDACVGQIIEVLIE 419
               R+  L K  L+ Q  SF  A + + I+ L+E
Sbjct: 347 TINARIKALNKIALKHQNHSFK-ALLNKPIKALVE 380


>gi|224419273|ref|ZP_03657279.1| 2-methylthioadenine synthetase [Helicobacter canadensis MIT
           98-5491]
          Length = 192

 Score =  110 bits (276), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 60/183 (32%), Positives = 110/183 (60%), Gaps = 5/183 (2%)

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
           +H+P+QSGS +IL+ M R ++   +   + ++R++ PD++I +D IVGFP E+++DF  T
Sbjct: 10  IHMPLQSGSTKILQKMKRGYSKEWFLDRVAKMRALIPDLSIGTDIIVGFPTESEEDFLDT 69

Query: 351 MDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ-----VDENVKAERLLCLQKKLREQQVSF 405
           +D+++K+ +   +SF YS R  T  +  L+      +DE +   RL+ L+ + +E     
Sbjct: 70  LDVLEKVRFDTLYSFIYSTRPHTQAATWLDNGEIQLLDEEIAKNRLMILKDRHKEILAQE 129

Query: 406 NDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYG 465
           N   +G+I  VL E + +E   L GRS   + + + +  + IG+I  V+I+++K + L G
Sbjct: 130 NAKQLGKIHPVLFESYDEENFLLEGRSDTNKLIRVKAGRNLIGEICNVKISEIKGAQLIG 189

Query: 466 ELV 468
           EL+
Sbjct: 190 ELL 192


>gi|108563143|ref|YP_627459.1| hypothetical protein HPAG1_0718 [Helicobacter pylori HPAG1]
 gi|122386488|sp|Q1CTD7|RIMO_HELPH RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|107836916|gb|ABF84785.1| hypothetical protein HPAG1_0718 [Helicobacter pylori HPAG1]
          Length = 439

 Score =  110 bits (275), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 99/395 (25%), Positives = 180/395 (45%), Gaps = 33/395 (8%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA-EKVYSFLGRIRN 89
           S GC  N+ DS  M    ++  Y   N    AD+I++NTC   E A  E + + L   ++
Sbjct: 13  SLGCSKNLVDSEVMLGKLYN--YTLTNDAKSADVILINTCGFIESAKQESIQTILNAAKD 70

Query: 90  LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149
            K     EG   +++ +GC+++   +EI    P V++  G   Y ++  L+ +       
Sbjct: 71  KK-----EGA--ILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDILIAKK------ 117

Query: 150 VDTDYSVEDKFERLSIVDGGYNRK----RGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                  +++F     +   YN +      V A++ I EGC++ C+FC +P  +G   SR
Sbjct: 118 -------QNQFSEQVFLSEHYNARIITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSR 170

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            L  ++ E   L   G  ++T + Q+ +++      G+K     L+ ++ + + L   R 
Sbjct: 171 ELDSILKEVENLALKGYKDMTFIAQDSSSFLYD--KGQKDGLIQLIKAIDKQQALKSARI 228

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
              +P   +  LI A     +   Y  +P+Q  SD +LK M R  +   + +++D ++ V
Sbjct: 229 LYLYPSSTTLELIGAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQV 288

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
           +    I S  IVG P E + +F      +D+  + +   F +S    T   + LE+V + 
Sbjct: 289 KESF-IRSTIIVGHPEENEGEFEELSAFLDEFRFDRLNIFAFSAEENTHAYS-LEKVPKK 346

Query: 386 VKAERLLCLQK-KLREQQVSFNDACVGQIIEVLIE 419
               R+  L K  L+ Q  SF  A + + I+ L+E
Sbjct: 347 TINARIKALNKIALKHQNHSFK-ALLNKPIKALVE 380


>gi|148827825|ref|YP_001292578.1| 2-methylthioadenine synthetase [Haemophilus influenzae PittGG]
 gi|148719067|gb|ABR00195.1| predicted 2-methylthioadenine synthetase [Haemophilus influenzae
           PittGG]
          Length = 218

 Score =  110 bits (275), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 74/215 (34%), Positives = 119/215 (55%), Gaps = 17/215 (7%)

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
           VRL Y   +P    D LI    D   L+PYL +P+Q  S +ILK+M R  +     + I 
Sbjct: 9   VRLHYVYPYPH--VDDLIPLMAD-GTLLPYLDIPLQHASPKILKAMKRPGSIDRTLERIK 65

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           + R + PD+ + S FIVGFPGET++DF+  +D + +    +   FK+SP  G P + M +
Sbjct: 66  QWREICPDLTLRSTFIVGFPGETEEDFQLLLDFLKEAQLDRVGCFKFSPVEGAPATEMAD 125

Query: 381 QVDENVKAERLLCLQKKLREQQVSFN--DACVGQIIEVLIEKHGKEKGKLVGRS----PW 434
           QV E+VK ER     +   +Q++S N     +G+ ++VL+++   ++  ++GRS    P 
Sbjct: 126 QVPEDVKEERFHRFMQ--LQQEISANRLKQKIGKTLDVLVDE--IDEDGIIGRSKADAPE 181

Query: 435 LQSVV----LNSKNHNIGDIIKVRITDVKISTLYG 465
           +  +V    L+  N  +GD+IKV IT+     L+G
Sbjct: 182 VDGLVYVDNLSGINVKVGDVIKVTITNSDEYDLWG 216


>gi|210134936|ref|YP_002301375.1| 2-methylthioadenine synthetase [Helicobacter pylori P12]
 gi|238066300|sp|B6JLW7|RIMO_HELP2 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|210132904|gb|ACJ07895.1| 2-methylthioadenine synthetase [Helicobacter pylori P12]
          Length = 439

 Score =  110 bits (275), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 95/394 (24%), Positives = 180/394 (45%), Gaps = 31/394 (7%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ DS  M    ++  Y   N    AD+I++NTC   E A ++       I+ +
Sbjct: 13  SLGCSKNLVDSEVMLGKLYN--YTLTNDAKSADVILINTCGFIESAKQE------SIQTI 64

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
            N+   +    +++ +GC+++   +EI    P V++  G   Y ++  ++ +        
Sbjct: 65  LNAAKDKKRGAILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMIAKK------- 117

Query: 151 DTDYSVEDKFERLSIVDGGYNRK----RGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
                 +++F     +   YN +      V A++ I EGC++ C+FC +P  +G   SR 
Sbjct: 118 ------QNQFSEQVFLSEHYNARIITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSRE 171

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
           L+ ++ E   L   G  ++T + Q+ +++      G+K     L+ ++ + + L   R  
Sbjct: 172 LNSILKEVENLALKGYKDMTFIAQDSSSFLYD--KGQKDGLIQLISAIDKQQALKSARIL 229

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
             +P   +  LI A     +   Y  +P+Q  SD +LK M R  +   + +++D ++ V+
Sbjct: 230 YLYPSSTTLELIGAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQVK 289

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
               I S  IVG P E + +F      +D+  + +   F +S    T   + LE+V +  
Sbjct: 290 ESF-IRSTIIVGHPEENEGEFEELSAFLDEFQFDRLNIFAFSAEENTHAYS-LEKVPKKT 347

Query: 387 KAERLLCLQK-KLREQQVSFNDACVGQIIEVLIE 419
              R+  L K  L+ Q  SF  A + + I+ L+E
Sbjct: 348 INARIKALNKIALKHQNHSFK-ALLNKPIKALVE 380


>gi|332296138|ref|YP_004438061.1| RNA modification enzyme, MiaB family [Thermodesulfobium narugense
           DSM 14796]
 gi|332179241|gb|AEE14930.1| RNA modification enzyme, MiaB family [Thermodesulfobium narugense
           DSM 14796]
          Length = 398

 Score =  110 bits (275), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 99/387 (25%), Positives = 175/387 (45%), Gaps = 60/387 (15%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           I+ ++ F  + GC+++  D  + +++FF    E V S   +D+I+L++C + E A ++  
Sbjct: 2   ILNKKVFSLALGCKVSQADLAKFKELFFPNYTEEV-SASLSDVIILSSCAVTENAQKESI 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             L +   L            +   GC   A                    Y  L +L  
Sbjct: 61  RILKKFSKLNKQ---------IYFLGCAVTA--------------------YENLKKL-- 89

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
              F + +   +  +E+      I+   + RKR +   L + +GC + CT+C++ Y RG 
Sbjct: 90  ---FPQVIFFNNKELEELLSNKVIISNYHGRKRYI---LKVGDGCCRECTYCIIRYLRGP 143

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-RGKGLDGEKCTFSDLLYSLSEIKGL 260
             SR    +  E   L+   V EI L    +  W    GL        ++++ L +I  L
Sbjct: 144 LRSRPFEDIKKEI--LMLRNVDEIVLSAIELALWGHDFGL--------NIVWLLDQIVRL 193

Query: 261 V-----RLRYTTSHPR-DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
           +     ++R  + +P   ++   +    + + + P+LHL +QS S  +LKSM R     +
Sbjct: 194 LDNNNTKIRLGSIYPALLLNKEFVNFIANSNKIQPHLHLSLQSASPDVLKSMKRFTNVDK 253

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
               I  IR  R +  +S+D IVG+P E+D DF+ T+D +DK+   +  SF +S R GT 
Sbjct: 254 VLDKIFEIRDKRDNFLVSTDIIVGYPTESDRDFQMTIDFLDKLPLVRVHSFPFSARKGTV 313

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQ 401
               L+ +D+ +  ER    QKK+ E+
Sbjct: 314 AFQ-LKPLDKKIILER----QKKVTER 335


>gi|308062055|gb|ADO03943.1| hypothetical protein HPCU_03915 [Helicobacter pylori Cuz20]
          Length = 439

 Score =  110 bits (274), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 94/394 (23%), Positives = 181/394 (45%), Gaps = 31/394 (7%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ DS  M    ++  Y   N    AD+I++NTC   E A ++       I+ +
Sbjct: 13  SLGCSKNLVDSEVMLGKLYN--YTLTNDTKSADVILINTCGFIESAKQE------SIQTI 64

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
            N+   +    +++ +GC+++   +EI    P V++  G   Y ++  ++ +        
Sbjct: 65  LNAAKDKKKGAILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMIAKK------- 117

Query: 151 DTDYSVEDKFERLSIVDGGYNRK----RGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
                 +++F     +   YN +      V A++ I EGC++ C+FC +P  +G   SR 
Sbjct: 118 ------QNQFSEQVFLSEHYNARIITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSRE 171

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
           L  ++ E + L   G  ++T + Q+ +++      G+K     L+ ++ + + L   R  
Sbjct: 172 LDSILKEVQDLALKGYTDMTFIAQDSSSFLYD--KGQKDGLIQLIKAIDKQQALKSARIL 229

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
             +P   +  LI A     +   Y  +P+Q  SD +LK M R  +   + ++++ ++ V+
Sbjct: 230 YLYPSSTTLELIGAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLNAMKQVK 289

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
               I S  IVG P E + +F      +D+  + +   F +S    T   + LE+V + +
Sbjct: 290 ESF-IRSTIIVGHPEENEGEFEELSAFLDEFRFDRLNIFAFSAEENTHAYS-LEKVPKKI 347

Query: 387 KAERLLCLQK-KLREQQVSFNDACVGQIIEVLIE 419
              R+  L K  L+ Q  SF  A + + I+ L+E
Sbjct: 348 INARIKALNKIALKHQNNSFK-ALLNKPIKALVE 380


>gi|298736436|ref|YP_003728962.1| hypothetical protein HPB8_941 [Helicobacter pylori B8]
 gi|298355626|emb|CBI66498.1| conserved hypothetical protein [Helicobacter pylori B8]
          Length = 439

 Score =  110 bits (274), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 98/395 (24%), Positives = 181/395 (45%), Gaps = 33/395 (8%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA-EKVYSFLGRIRN 89
           S GC  N+ DS  M    ++  Y   N    AD+I++NTC   E A  E + + L   ++
Sbjct: 13  SLGCSKNLVDSEVMLGKLYN--YTLTNDAKKADVILINTCGFIESAKQESIQTILNAAKD 70

Query: 90  LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149
            K     EG   +++ +GC+++   +EI    P V++  G   Y ++  ++ +       
Sbjct: 71  KK-----EGA--ILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMIAKK------ 117

Query: 150 VDTDYSVEDKFERLSIVDGGYNRK----RGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                  +++F     +   YN +      V A++ I EGC++ C+FC +P  +G   SR
Sbjct: 118 -------QNQFSEQVFLSEHYNARIITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSR 170

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            L  ++ E   L   G  ++T + Q+ +++      G+K     L+ ++ + + L   R 
Sbjct: 171 ELDSILKEVEDLALKGYKDMTFIAQDSSSFLYD--KGQKDGLIQLIRAIDKQQALKSARI 228

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
              +P   +  LI A     +   Y  +P+Q  SD +LK M R  +   + +++D ++ V
Sbjct: 229 LYLYPSSTTLELIGAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQV 288

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
           +    I S  IVG P E + +F      +D+  + +   F +S    T   + LE+V + 
Sbjct: 289 KESF-IRSTIIVGHPEENEGEFEELSAFLDEFRFDRLNIFAFSAEENTHAYS-LEKVPKK 346

Query: 386 VKAERLLCLQK-KLREQQVSFNDACVGQIIEVLIE 419
           +   R+  L K  L+ Q  SF  A + + I+ L+E
Sbjct: 347 IINARIKALNKIALKHQNHSFK-ALLNKPIKALVE 380


>gi|153840611|ref|ZP_01993278.1| 2-methylthioadenine synthetase [Vibrio parahaemolyticus AQ3810]
 gi|149745726|gb|EDM56856.1| 2-methylthioadenine synthetase [Vibrio parahaemolyticus AQ3810]
          Length = 436

 Score =  110 bits (274), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 62/154 (40%), Positives = 90/154 (58%), Gaps = 1/154 (0%)

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
           EY+ II ++R  RPDI ISSDFIVGFPGETD DF+ TM L+  + +  +FSF +SPR GT
Sbjct: 1   EYKSIIRKLRKARPDIQISSDFIVGFPGETDKDFQDTMKLIKDVDFDMSFSFIFSPRPGT 60

Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRS 432
           P ++    + E VK ERL  LQ+ +  Q + ++   +     VL+E   K+   +L  R+
Sbjct: 61  PAADYPCDIPEQVKKERLYELQQTINAQAMRYSRLMLATEQRVLVEGPSKKNLMELRART 120

Query: 433 PWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGE 466
              + V        IG  + V+ITDV  ++L G+
Sbjct: 121 ENNRVVNFEGSADLIGQFVDVKITDVFANSLRGD 154


>gi|329911496|ref|ZP_08275547.1| tRNA-i(6)A37 methylthiotransferase [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327545868|gb|EGF30979.1| tRNA-i(6)A37 methylthiotransferase [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 113

 Score =  110 bits (274), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 55/114 (48%), Positives = 78/114 (68%), Gaps = 5/114 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ F+K++GCQMN YDS +M D+   + G  + ++ +DAD+I+LNTC +REKA EKV+S 
Sbjct: 3   KKVFIKTFGCQMNEYDSDKMADVLNATHGMFKTDTPEDADVILLNTCSVREKAQEKVFSD 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLP 137
           LGRIR LK  +     DL++ V GCVA  EG  I++R+P V+VV GPQ     P
Sbjct: 63  LGRIRELKLLK----PDLVIGVGGCVASQEGAAIIKRAPYVDVVFGPQRCTACP 112


>gi|315586597|gb|ADU40978.1| possible 2-methylthioadenine synthetase [Helicobacter pylori 35A]
          Length = 439

 Score =  110 bits (274), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 95/394 (24%), Positives = 180/394 (45%), Gaps = 31/394 (7%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ DS  M    ++  Y   N    AD+I++NTC   E A ++       I+ +
Sbjct: 13  SLGCSKNLVDSEVMLGKLYN--YTLTNDTKSADVILINTCGFIESAKQE------SIQTI 64

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
            N+   +    +++ +GC+++   +EI    P V++  G   Y ++  ++ +        
Sbjct: 65  LNAAKDKKKGAILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMIAKK------- 117

Query: 151 DTDYSVEDKFERLSIVDGGYNRK----RGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
                 +++F     +   YN +      V A++ I EGC++ C+FC +P  +G   SR 
Sbjct: 118 ------QNQFSEQVFLSEHYNARIITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSRE 171

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
           L  ++ E   L   G  ++T + Q+ +++      G+K     L+ ++ + + L   R  
Sbjct: 172 LDSILKEVEDLALKGYTDMTFIAQDSSSFLYD--KGQKDGLIQLIKAIDKQQVLKSARIL 229

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
             +P   +  LI A     +   Y  +P+Q  SD +LK M R  +   + +++D ++ V+
Sbjct: 230 YLYPSSTTLELIGAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQVK 289

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
               I S  IVG P E + +F      +D+  + +   F +S    T   + LE+V + +
Sbjct: 290 ESF-IRSTIIVGHPEENEGEFEELSAFLDEFRFDRLNIFAFSAEENTHAYS-LEKVPKKI 347

Query: 387 KAERLLCLQK-KLREQQVSFNDACVGQIIEVLIE 419
              R+  L K  L+ Q  SF  A + + I+ L+E
Sbjct: 348 INARIKALNKIALKHQNNSFK-ALLNKPIKALVE 380


>gi|308184518|ref|YP_003928651.1| hypothetical protein HPSJM_03720 [Helicobacter pylori SJM180]
 gi|308060438|gb|ADO02334.1| hypothetical protein HPSJM_03720 [Helicobacter pylori SJM180]
          Length = 439

 Score =  110 bits (274), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 99/395 (25%), Positives = 180/395 (45%), Gaps = 33/395 (8%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA-EKVYSFLGRIRN 89
           S GC  N+ DS  M    ++  Y   +    AD+I++NTC   E A  E + + L   ++
Sbjct: 13  SLGCSKNLVDSEMMLGKLYN--YTLTDDAKKADVILINTCGFIESAKQESIQTILNAAKD 70

Query: 90  LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149
            K     EG   +++ +GC+++   +EI    P V++  G   Y ++  L+ +       
Sbjct: 71  KK-----EGA--ILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDILIAKK------ 117

Query: 150 VDTDYSVEDKFERLSIVDGGYNRK----RGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                  +++F     +   YN +      V A++ I EGC++ C+FC +P  +G   SR
Sbjct: 118 -------QNQFSEQVFLSEHYNTRIITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSR 170

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            L  ++ E   L   G  ++T + Q+ +++      G+K     L+ ++ + + L   R 
Sbjct: 171 ELDSILKEVENLALKGYKDMTFIAQDSSSFLYD--KGQKDGLIQLIRAIDKQQALKSARI 228

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
              +P   +  LI A     V   Y  +P+Q  SD +LK M R  +   + +++D ++ V
Sbjct: 229 LYLYPSSTTLELIGAIESSPVFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQV 288

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
           +    I S  IVG P E + +F      +D+  + +   F +S    T   + LE+V + 
Sbjct: 289 KESF-IRSTIIVGHPEENEGEFEELSAFLDEFQFDRLNIFAFSAEENTHAYS-LEKVPKK 346

Query: 386 VKAERLLCLQK-KLREQQVSFNDACVGQIIEVLIE 419
               R+  L K  L+ Q  SF  A + + I+ L+E
Sbjct: 347 TINARIKALNKIALKHQNHSFK-ALLNKPIKALVE 380


>gi|312892375|ref|ZP_07751870.1| Radical SAM domain protein [Mucilaginibacter paludis DSM 18603]
 gi|311295159|gb|EFQ72333.1| Radical SAM domain protein [Mucilaginibacter paludis DSM 18603]
          Length = 210

 Score =  109 bits (273), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 70/209 (33%), Positives = 114/209 (54%), Gaps = 3/209 (1%)

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R++TSHP+D++D ++      D +  Y+HLPVQSG+ RIL+ MNR +    Y   ID I
Sbjct: 1   MRFSTSHPKDITDEVLYTIARYDNICNYIHLPVQSGNSRILEMMNRTYDRDWYIDRIDAI 60

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT-PGSNMLEQ 381
           R + P  AIS+D I GF  ETD++ + T+ ++D + Y  A+ F YS R GT       + 
Sbjct: 61  RRIIPGCAISTDVITGFCTETDEEHQDTVSMMDYVQYDFAYMFMYSERPGTLAAKRYADD 120

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440
           + E+VK  RL  +  K ++  +    A +G++ +VLIE + K+  +   GRS     V+ 
Sbjct: 121 IPEDVKKTRLQEIVAKQQQYSLVRLQAQLGKVQKVLIEGYSKKSDRDYCGRSDQNAMVIF 180

Query: 441 N-SKNHNIGDIIKVRITDVKISTLYGELV 468
              +    G  + V       +TL G+++
Sbjct: 181 PVDERFKPGQYVNVLAEKCTTATLIGKII 209


>gi|217033775|ref|ZP_03439201.1| hypothetical protein HP9810_7g56 [Helicobacter pylori 98-10]
 gi|216943824|gb|EEC23264.1| hypothetical protein HP9810_7g56 [Helicobacter pylori 98-10]
          Length = 439

 Score =  109 bits (273), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 95/394 (24%), Positives = 180/394 (45%), Gaps = 31/394 (7%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ DS  M    ++  Y   N    AD+I++NTC   E A ++       I+ +
Sbjct: 13  SLGCSKNLVDSEVMLGKLYN--YTFTNDTKSADVILINTCGFIESAKQE------SIQTI 64

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
            N+   +    +++ +GC+++   +EI    P V++  G   Y ++  ++ +        
Sbjct: 65  LNAAKDKKRGAILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMIAKK------- 117

Query: 151 DTDYSVEDKFERLSIVDGGYNRK----RGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
                 +++F     +   YN +      V A++ I EGC++ C+FC +P  +G   SR 
Sbjct: 118 ------QNQFSEQVFLSEHYNARIITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSRE 171

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
           L  ++ E   L   G  ++T + Q+ +++      G+K     L+ ++ + + L   R  
Sbjct: 172 LDSILKEVENLALKGYRDMTFIAQDSSSFLYD--KGQKDGLIQLIKAIDKQQALKSARIL 229

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
             +P   +  LI A     +   Y  +P+Q  SD +LK M R  +   + +++D ++ V+
Sbjct: 230 YLYPSSTTLELIGAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQVK 289

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
               I S  IVG P E + +F      +D+  + +   F +S    T   + LE+V + +
Sbjct: 290 ESF-IRSTIIVGHPEENEGEFEELSAFLDEFRFDRLNIFAFSAEENTHAYS-LEKVPKKI 347

Query: 387 KAERLLCLQK-KLREQQVSFNDACVGQIIEVLIE 419
              R+  L K  L+ Q  SF  A + + I+ L+E
Sbjct: 348 INARIKALNKIALKHQNNSFK-ALLNKPIKALVE 380


>gi|237755858|ref|ZP_04584455.1| hypothetical protein SULYE_0497 [Sulfurihydrogenibium
           yellowstonense SS-5]
 gi|237691994|gb|EEP61005.1| hypothetical protein SULYE_0497 [Sulfurihydrogenibium
           yellowstonense SS-5]
          Length = 253

 Score =  109 bits (273), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 63/202 (31%), Positives = 105/202 (51%), Gaps = 3/202 (1%)

Query: 217 LIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDC 276
           L+D G  EI L G  ++ +   G D ++ T  DLL +L +I+ L R+R ++    ++ D 
Sbjct: 6   LVDKGFKEIVLTGTQLSQY---GYDHKEGTLYDLLKNLVKIENLYRIRLSSMGINELDDK 62

Query: 277 LIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFI 336
           LI      + + P+ H+ +QS  D++L+ M R +T  EY + +++I S RP+ AI +D I
Sbjct: 63  LIDFLTSEEKIAPHFHISIQSADDKVLRDMKRNYTVKEYIEKVEKIISKRPETAIGTDII 122

Query: 337 VGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQK 396
            GFP E    F  T+  ++ I +A    F YS R GT      ++V    K ER   L++
Sbjct: 123 TGFPTEDKTAFLNTVKTINDIPFAYIHVFTYSERDGTTAVKFGDRVHPEEKKERTRILRE 182

Query: 397 KLREQQVSFNDACVGQIIEVLI 418
              ++   F    + + +E LI
Sbjct: 183 ISYQKNYEFRKRFINKDLEFLI 204


>gi|301779277|ref|XP_002925056.1| PREDICTED: CDK5 regulatory subunit-associated protein 1-like
           1-like, partial [Ailuropoda melanoleuca]
          Length = 429

 Score =  109 bits (273), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 87/347 (25%), Positives = 161/347 (46%), Gaps = 33/347 (9%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           Q+ +++++GC  N  D   M     + GYE   +  DADL +LN+C ++  A +    F 
Sbjct: 63  QKIWMRTWGCSHNNSDGEYMAGQLAAYGYEITENASDADLWLLNSCTVKNPAEDH---FR 119

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             I+  +    K      +V+AGCV QA+  +   +      ++G Q   R+ E++E   
Sbjct: 120 NSIKKAQEENKK------IVLAGCVPQAQPRQDYLKG---LSIIGVQQIDRVVEVVEETI 170

Query: 145 FGKRVVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            G  V       ++  +RL  + +D    RK  +   ++I  GC   CT+C   + RG  
Sbjct: 171 KGHSVRLLGQK-KNNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNL 229

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI----- 257
            S  + ++V+ A++    GVCEI L  ++  A+ G+ +     +   LL+ L E+     
Sbjct: 230 ASYPIDELVERAKQSFQEGVCEIWLTSEDTGAY-GRDIG---TSLPALLWKLVEVIPEGA 285

Query: 258 ---KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
               G+    Y + H  +M+  L         +  +LH+PVQS SD +L  M R +   +
Sbjct: 286 MLRLGMTNPPYISEHLEEMAKILNHPR-----VYAFLHIPVQSASDTVLMEMKREYCVAD 340

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
           +++++D ++  + +   +S  + G PG     F  T  +V++   +Q
Sbjct: 341 FKRVVDFLKENQTEGNPNSQ-VRGVPGSLLTMFWKTQSVVEEPEQSQ 386


>gi|257460357|ref|ZP_05625458.1| conserved hypothetical protein [Campylobacter gracilis RM3268]
 gi|257441688|gb|EEV16830.1| conserved hypothetical protein [Campylobacter gracilis RM3268]
          Length = 410

 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 98/373 (26%), Positives = 176/373 (47%), Gaps = 34/373 (9%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + + K++GC+ N+YD+  ++    S   E  +    AD++V+N+C +   A   V +++ 
Sbjct: 2   KIYFKTFGCRTNIYDTQLIKSNLKSG--EITHDEQGADVVVINSCTVTNGADADVRNYVN 59

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-ERAR 144
           ++  L            +++ GC A + GEE+ +   +  V  G     ++ E L   ++
Sbjct: 60  KMNRLGKK---------ILLTGCGAVSRGEELYKNGAVFGVF-GMSQKEKIDEFLGSESK 109

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGY--NRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           F        Y + D    LS V+     + +    AF+ IQEGCD  C++C++P  RG  
Sbjct: 110 F--------YDIGD----LSSVEKNLVSDYEDHTKAFIKIQEGCDFNCSYCIIPSVRGRS 157

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            S S   ++ EA  L+ NG  EI L G N+ ++ GK       +   LL  L  I+G+ R
Sbjct: 158 RSSSEDAILKEAVSLVANGFSEIVLTGTNIGSY-GKAAG---TSLGALLQKLGGIRGIRR 213

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R  +  P  + D   +       L  +LH+ +Q  S ++L  M RR++A    ++   +
Sbjct: 214 IRLGSIEPSQI-DASFREILSEPWLERHLHIALQHTSQKMLSIMRRRNSALRDLELFCEL 272

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
                  A+ +DFIV  PGE+++ +   ++   K       +F +SPR GT  +++  ++
Sbjct: 273 --AERGFALGTDFIVAHPGESEELWLEAVENFKKFPLTHLHAFIFSPRQGTASASLKGRI 330

Query: 383 DENVKAERLLCLQ 395
           D      RL  LQ
Sbjct: 331 DGKTAKARLKMLQ 343


>gi|126643043|ref|YP_001086027.1| putative tRNA-i(6)A37 modification enzyme [Acinetobacter baumannii
           ATCC 17978]
 gi|126388927|gb|ABO13425.1| putative tRNA-i(6)A37 modification enzyme [Acinetobacter baumannii
           ATCC 17978]
          Length = 137

 Score =  108 bits (271), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 61/148 (41%), Positives = 91/148 (61%), Gaps = 15/148 (10%)

Query: 36  MNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSR 94
           MN YDS RM D+   S GY   N+ ++AD++++NTC IREKA EKV+S LGR R LK   
Sbjct: 1   MNEYDSHRMADLLGDSHGYVLTNNPNEADILLMNTCSIREKAQEKVFSELGRWRKLK--- 57

Query: 95  IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDY 154
            ++  DL++ V GCVA  EG+ I +R+P V+++ GPQT +RLP++L++            
Sbjct: 58  -EQNPDLVIGVGGCVASQEGDNIQKRAPYVDMIFGPQTLHRLPQMLDQHHA--------- 107

Query: 155 SVED-KFERLSIVDGGYNRKRGVTAFLT 181
            VE  K E++ +VD  +      T++L 
Sbjct: 108 QVEKPKKEKIKLVDISFPDIENSTSYLN 135


>gi|330902503|gb|EGH33524.1| ribosomal protein S12 methylthiotransferase [Pseudomonas syringae
           pv. japonica str. M301072PT]
          Length = 262

 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 79/241 (32%), Positives = 132/241 (54%), Gaps = 26/241 (10%)

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTF 247
           P  RG  +SR +  V+DEA++L+ +GV E+ ++ Q+ +A+      R    DG+  K   
Sbjct: 1   PSMRGKLVSRPVGDVLDEAKRLVKSGVKELLVISQDTSAYGVDVKYRTGFWDGQPVKTRM 60

Query: 248 SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307
           ++L  +L  +   VRL Y   +P       + A G +   +PYL +P Q  S +ILK M 
Sbjct: 61  TELCQALGSMGVWVRLHYVYPYPHVDELIPLMAAGKI---LPYLDIPFQHASPKILKLMK 117

Query: 308 RRHTAYEYRQIIDRIRSVR---PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
           R   A+E + +  RI++ R   PD+ I S FIVGFPGET++DF+  +D + +    +   
Sbjct: 118 R--PAFEDKTLA-RIKNWREQCPDLIIRSTFIVGFPGETEEDFQYLLDWLTEAQLDRVGC 174

Query: 365 FKYSPRLGTPGSNMLEQ--VDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419
           F+YSP  G P +N+L+   V ++VK    +R +  Q+ +   ++      +G+ IEVLI+
Sbjct: 175 FQYSPVEGAP-ANLLDAAIVPDDVKQDRWDRFMAHQQAISAARLQMK---IGKEIEVLID 230

Query: 420 K 420
           +
Sbjct: 231 E 231


>gi|317009256|gb|ADU79836.1| hypothetical protein HPIN_02965 [Helicobacter pylori India7]
          Length = 439

 Score =  108 bits (269), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 98/393 (24%), Positives = 188/393 (47%), Gaps = 29/393 (7%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA-EKVYSFLGRIRN 89
           S GC  N+ DS  M    ++  Y   N   +AD+I++NTC   E A  E + + L   ++
Sbjct: 13  SLGCSKNLVDSEVMLGKLYN--YTLTNDAKNADVILINTCGFIESAKQESIQTILNAAKD 70

Query: 90  LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR--FGK 147
            K     EG   +++ +GC+++   +EI    P V++  G   Y ++  ++ + +  F +
Sbjct: 71  KK-----EGA--ILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMIAKKQNQFSE 123

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
           +V  +++          I+ G       V A++ I EGC++ C+FC +P  +G   SR L
Sbjct: 124 QVFLSEHY------NARIITGSI-----VHAYVKISEGCNQKCSFCAIPSFKGKLQSREL 172

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
           + ++ E + L   G  ++T + Q+ +++      G+K     L+ ++ + + L   R   
Sbjct: 173 NSILKEVQDLALKGYKDMTFIAQDSSSFLYD--KGQKDGLIQLIRAIDKQQALKSARILY 230

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
            +P   +  LI A     +   Y  +P+Q  SD +LK M R  +   + ++++ ++ V+ 
Sbjct: 231 LYPSSTTLELIGAIESSLIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLNAMKQVKE 290

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
              I S  IVG P E++ +F      +D+  + +   F +S    T   + LE+V + + 
Sbjct: 291 SF-IRSTIIVGHPEESEGEFEELSAFLDEFRFDRLNIFAFSAEENTHAYS-LEKVPKKII 348

Query: 388 AERLLCLQK-KLREQQVSFNDACVGQIIEVLIE 419
             R+  L K  L+ Q  SF  A + + I+ L+E
Sbjct: 349 NARIKALNKIALKHQNHSFK-ALLNKPIKALVE 380


>gi|942592|gb|AAC44030.1| unknown [Mycoplasma iowae]
          Length = 249

 Score =  108 bits (269), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 72/246 (29%), Positives = 131/246 (53%), Gaps = 6/246 (2%)

Query: 224 EITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIK-AHG 282
           EI L G N   +    LD    TF DLL +++++ G  R+R ++  P  ++D +I     
Sbjct: 8   EIVLTGVNTAGY----LDENNNTFFDLLNNINKLDGDFRVRISSLEPFQINDEIIDLVTS 63

Query: 283 DLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGE 342
           +      + H+ +QSGSD +LK MNR++T  E+ +++ +I +  P    ++D+IVGFP E
Sbjct: 64  NKKRFCQHWHICLQSGSDDVLKKMNRKYTTDEFYKLMQKILNKSPLTNFTTDYIVGFPTE 123

Query: 343 TDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQ 402
           TD+D + ++D ++KI       F YS R  T  S+  + ++++ K +R+  + K     +
Sbjct: 124 TDEDQKKSIDFLNKIKLYDMHIFPYSKRNNTRSSH-YKDINDSTKKDRVKEITKLNYLNK 182

Query: 403 VSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKIST 462
                  +G+  EVL EK  +++    G S     V++ S ++    ++KVRI  +   +
Sbjct: 183 KENLKKYIGKTCEVLFEKKKEDEKMWSGYSNEYCRVMVESGDNLENKMLKVRIKKIFFDS 242

Query: 463 LYGELV 468
           L GE++
Sbjct: 243 LVGEII 248


>gi|208434645|ref|YP_002266311.1| hypothetical protein HPG27_690 [Helicobacter pylori G27]
 gi|238066301|sp|B5Z796|RIMO_HELPG RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|208432574|gb|ACI27445.1| hypothetical protein HPG27_690 [Helicobacter pylori G27]
          Length = 439

 Score =  107 bits (268), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 97/395 (24%), Positives = 181/395 (45%), Gaps = 33/395 (8%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA-EKVYSFLGRIRN 89
           S GC  N+ DS  M    ++  Y   N +  AD+I++NTC   E A  E + + L   ++
Sbjct: 13  SLGCSKNLVDSEVMLGKLYN--YTLTNDVKSADVILINTCGFIESAKQESIQTILNAAKD 70

Query: 90  LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149
            K     EG   +++ +GC+++   +EI    P V++  G   Y ++  ++ +       
Sbjct: 71  KK-----EGA--ILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMIAKK------ 117

Query: 150 VDTDYSVEDKFERLSIVDGGYNRK----RGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                  +++F     +   YN +      V A++ I EGC++ C+FC +P  +G   SR
Sbjct: 118 -------QNQFSEQVFLSEHYNARIITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSR 170

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            L  ++ E   L   G  ++T + Q+ +++      G+K     L+ ++ + + L   R 
Sbjct: 171 ELDSILKEVEDLALKGYKDMTFIAQDSSSFLYD--KGQKDGLIQLIRAIDKQQALKSARI 228

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
              +P   +  LI A     +   Y  +P+Q  SD +LK M R  +   + ++++ ++ V
Sbjct: 229 LYLYPSSTTLELIGAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLNAMKQV 288

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
           +    I S  IVG P E + +F      +D+  + +   F +S    T   + LE+V + 
Sbjct: 289 KESF-IRSTIIVGHPEENEGEFEELSAFLDEFRFDRLNIFAFSAEENTHAYS-LEKVPKK 346

Query: 386 VKAERLLCLQK-KLREQQVSFNDACVGQIIEVLIE 419
               R+  L K  L+ Q  SF  A + + I+ L+E
Sbjct: 347 TINARIKALNKIALKHQNHSFK-ALLNKPIKALVE 380


>gi|224826493|ref|ZP_03699594.1| MiaB-like tRNA modifying enzyme YliG [Lutiella nitroferrum 2002]
 gi|224601094|gb|EEG07276.1| MiaB-like tRNA modifying enzyme YliG [Lutiella nitroferrum 2002]
          Length = 370

 Score =  107 bits (268), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 93/314 (29%), Positives = 153/314 (48%), Gaps = 37/314 (11%)

Query: 178 AFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG 237
           A+L I EGC+  CT C++P  RG   SR +  V+ EA  L  +GV E+ ++ Q+ +A+  
Sbjct: 71  AYLKISEGCNHRCTSCIIPSMRGDLDSRPIHDVLSEAENLAKSGVKELLVISQDTSAY-- 128

Query: 238 KGLDGEKCT-----------FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV 286
            G+D +  T            ++L   L      VRL Y   +P    D +I    D  +
Sbjct: 129 -GVDVKYKTGFHNGRPVRTRMTELCEELGRHGIWVRLHYVYPYPH--VDEVIPLMRDGKI 185

Query: 287 LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDD 346
           L PYL +P Q  S RILK M R   +      I + R + PD+ I S FIVGFPGET+++
Sbjct: 186 L-PYLDIPFQHASQRILKLMKRPANSENVLARIKKWREICPDLVIRSTFIVGFPGETEEE 244

Query: 347 FRATMD-----LVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK---AERLLCLQKKL 398
           F   +      ++D++G      F YSP  G   +++ + V E VK    ER + +Q ++
Sbjct: 245 FEELLALLREAMLDRVG-----CFTYSPVAGAAANDLPDPVPEEVKEVRKERFMEVQAEI 299

Query: 399 REQQVSFNDACVGQIIEVLIEKHGKEKG--KLVGRSPWLQSVVL--NSKNHNIGDIIKVR 454
              +++     VGQ + VL+++  ++    +    +P +  +V   ++    +GD ++V 
Sbjct: 300 SAARLARR---VGQRMTVLVDEIDEQGAVCRSYADAPEIDGMVFVADADGLQVGDFVEVE 356

Query: 455 ITDVKISTLYGELV 468
           I       L+ E V
Sbjct: 357 IAASDEHDLWAERV 370


>gi|299471728|emb|CBN76949.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Ectocarpus siliculosus]
          Length = 455

 Score =  107 bits (267), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 62/167 (37%), Positives = 101/167 (60%), Gaps = 2/167 (1%)

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
           ++LK+M R +T   Y +IIDRIR + PD AI+ D IVGFPGET++ F+ T+DL++++ + 
Sbjct: 282 QVLKNMRRGYTITRYMRIIDRIRELSPDAAITGDVIVGFPGETEEQFQHTLDLMERVKFD 341

Query: 361 QAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-E 419
              +F YSPR  T  +    QV E+VKA+RL  + +         +D  +G++ EVL+ E
Sbjct: 342 NLNTFSYSPRPNTEAALWENQVPEDVKADRLQRVMRLGCTHAQERSDRYMGRVEEVLVEE 401

Query: 420 KHGKEKGKLVGRSPWLQSVVLNSKNHNI-GDIIKVRITDVKISTLYG 465
           ++ K   +++GR+   + V LN     + G +IK  IT+ +  +L G
Sbjct: 402 RNPKNAAQVMGRTRTNRPVFLNGDIGQLKGKLIKAEITECRPWSLTG 448


>gi|302875948|ref|YP_003844581.1| Radical SAM domain-containing protein [Clostridium cellulovorans
           743B]
 gi|307686658|ref|ZP_07629104.1| Radical SAM domain-containing protein [Clostridium cellulovorans
           743B]
 gi|302578805|gb|ADL52817.1| Radical SAM domain protein [Clostridium cellulovorans 743B]
          Length = 382

 Score =  107 bits (266), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 100/383 (26%), Positives = 156/383 (40%), Gaps = 63/383 (16%)

Query: 43  RMEDMFFSQGYERVNS-------------------MDDADLIVLNTCHIREKAAEKVYSF 83
           +M + F   GYE VN                      +ADL VL TC   +   +  +  
Sbjct: 20  KMRNFFRENGYELVNDGTGLDPTNKYAFPLEDLVISPEADLFVLTTCGFSKSIEDGDFDA 79

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           L  I   K    K      V+V GC+ +   E                   RL E  +  
Sbjct: 80  LKMIMKYKKPSAK------VIVGGCIVKIAKE-------------------RLDEEFDGE 114

Query: 144 RFGKRVVDT-DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           RF  +  +  D  VE K     I DG          F+ IQ+GC+  C++C +    G  
Sbjct: 115 RFDAKSYNLLDEFVEHKVSFDEIKDGNVMNFTD-NYFIKIQDGCNHRCSYCAIWKAAGKS 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            S+ +++V++E    +  G   I  LG+ + A+   GLD     F++LL  + +I+G   
Sbjct: 174 TSKPIAEVIEEFNYGLRQGFKHIYFLGECMGAY---GLDF-GSNFAELLEEIDKIEGDYD 229

Query: 263 LRYTTSHP-------RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
           L      P         +    IK       ++  LH+P+QSG DRILK M R       
Sbjct: 230 LLIEDISPIYFLRNYEAIKKLCIKG------VIRSLHVPIQSGCDRILKLMMRTGDMALV 283

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
           ++ +  +++  P+  +SS  IVGFP ET ++F+ T++      +       +S R G P 
Sbjct: 284 KEKMQELKNAAPNTTLSSAVIVGFPTETVEEFQETLEYCKDSCFDTVACHVFSARDGAPA 343

Query: 376 SNMLEQVDENVKAERLLCLQKKL 398
           + M  QVDE  K  R    ++K 
Sbjct: 344 AEMDGQVDEEEKYRRYTEFKEKF 366


>gi|313142775|ref|ZP_07804968.1| conserved hypothetical protein [Helicobacter canadensis MIT
           98-5491]
 gi|313131806|gb|EFR49423.1| conserved hypothetical protein [Helicobacter canadensis MIT
           98-5491]
          Length = 181

 Score =  107 bits (266), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 59/181 (32%), Positives = 108/181 (59%), Gaps = 5/181 (2%)

Query: 293 LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352
           +P+QSGS +IL+ M R ++   +   + ++R++ PD++I +D IVGFP E+++DF  T+D
Sbjct: 1   MPLQSGSTKILQKMKRGYSKEWFLDRVAKMRALIPDLSIGTDIIVGFPTESEEDFLDTLD 60

Query: 353 LVDKIGYAQAFSFKYSPRLGTPGSNMLEQ-----VDENVKAERLLCLQKKLREQQVSFND 407
           +++K+ +   +SF YS R  T  +  L+      +DE +   RL+ L+ + +E     N 
Sbjct: 61  VLEKVRFDTLYSFIYSTRPHTQAATWLDNGEIQLLDEEIAKNRLMILKDRHKEILAQENA 120

Query: 408 ACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
             +G+I  VL E + +E   L GRS   + + + +  + IG+I  V+I+++K + L GEL
Sbjct: 121 KQLGKIHPVLFESYDEENFLLEGRSDTNKLIRVKAGRNLIGEICNVKISEIKGAQLIGEL 180

Query: 468 V 468
           +
Sbjct: 181 L 181


>gi|308162206|gb|EFO64615.1| tRNA 2-methylthioadenosine synthase [Giardia lamblia P15]
          Length = 525

 Score =  107 bits (266), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 127/516 (24%), Positives = 221/516 (42%), Gaps = 99/516 (19%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQG---------YERVNSMDDADLIVLNTCHIREKA 76
           R  + + GC  N  +S  +     + G         Y    S  D D++ +N+C ++  +
Sbjct: 25  RVMMVTMGCGHNAAESDIIASALQTAGAVIIHSNGKYITPESAKDVDVLYINSCTVKNPS 84

Query: 77  AEKVYSFLGRIRNLKNSRIKEGGDL--LVVVAGCVAQAEG--EEILRRSP-----IVNVV 127
            +K +             +++G ++  +VV+ GCV Q+ G   + LR++      I++ V
Sbjct: 85  EDKAFV-----------HVQKGLEVGTVVVLGGCVPQSYGAMSDELRKASASKQLIISGV 133

Query: 128 VGPQTYYRLPELLERARFGKRVVDTDYSVEDKF--------------------ERLSIVD 167
           +  Q    LP LL  A     +++T + ++                       E    VD
Sbjct: 134 LTQQWLTALPGLLREA-IDFHILNTSHVLQPALRMTQPSSKAGVSAAISYVTKEATKDVD 192

Query: 168 GGY------NRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARK-LIDN 220
             Y      +R   +   ++   GC   CT+C   ++RG   S  L  ++   R  L D 
Sbjct: 193 VEYLKCTPVHRANPIIDIISTGSGCMGSCTYCKTCHSRGRLRSVPLDTLLTRIRNSLADP 252

Query: 221 GVCEITLLGQNVNAW-RGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM----SD 275
            + E+ L G++  AW R  G      TF+ LL    E++ L+     T     +     D
Sbjct: 253 VIRELWLTGEDTLAWGRESG-----TTFAGLL---QEVQKLLETENPTHKMLKIGMTDPD 304

Query: 276 CLIKAHGDLDVLM------PYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329
            +I     L   +       +LHLPVQSGSDRIL  M R +    + +   +++S  PD+
Sbjct: 305 SIINQEDSLASFICCKYVYKFLHLPVQSGSDRILTLMRRHYDIETFLKSCSKLQSAVPDL 364

Query: 330 AISSDFIVGFPGETDDDFRATMDLV-----DKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
            + +D I GFPGETD+D   +++L      D   +      +Y  R  TP ++M EQV  
Sbjct: 365 CLDTDIICGFPGETDEDHAQSLNLFRNLKEDAPRFQVVNITQYYARKNTPAASM-EQVPA 423

Query: 385 NVKAERLLCLQKKLREQQVSF-NDACVGQIIEVLI------EKHGKEKGKLVGRSPWLQS 437
           + K ER   + + ++    SF  D   GQ+ ++++      E HG++ G   G++    +
Sbjct: 424 SKKRERTKEMSEVVKN---SFRRDQYHGQVHDIMVLEKLQTESHGRQYG---GKTYNNLT 477

Query: 438 VVLNSKNHNI----GDIIKVRITDVKISTLYGELVV 469
           VV+ + +  +    G  I+VRIT      L G ++ 
Sbjct: 478 VVIETVDQEVPIKLGSYIRVRITGSTRVALIGSVMA 513


>gi|74146734|dbj|BAE41351.1| unnamed protein product [Mus musculus]
          Length = 351

 Score =  106 bits (265), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 82/310 (26%), Positives = 143/310 (46%), Gaps = 34/310 (10%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           Q+ +++++GC  N  D   M     + GY+   +  DADL +LN+C ++  A +    F 
Sbjct: 63  QKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAED---HFR 119

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             I+  +    K      VV+AGCV QA+  +   +      ++G Q   R+ E++E   
Sbjct: 120 NSIKKAQEENKK------VVLAGCVPQAQPRQDYLKG---LSIIGVQQIDRVVEVVEETI 170

Query: 145 FGKRVVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            G  V       +D  +RL  + +D    RK  +   ++I  GC   CT+C   + RG  
Sbjct: 171 KGHSVRLLGQK-KDNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNL 229

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-RGKGLDGEKCTFSDLLYSLSEI---- 257
            S  + ++V+ A++    GVCEI L  ++  A+ R  G D        LL+ L E+    
Sbjct: 230 ASYPIDELVERAKQSFQEGVCEIWLTSEDTGAYGRDIGTD-----LPTLLWKLVEVIPEG 284

Query: 258 ----KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
                G+    Y   H  +M+  L         +  +LH+PVQS SD +L  M R +   
Sbjct: 285 AMLRLGMTNPPYILEHLEEMAKILNHPR-----VYAFLHIPVQSASDSVLMDMKREYCVA 339

Query: 314 EYRQIIDRIR 323
           ++++++D ++
Sbjct: 340 DFKRVVDFLK 349


>gi|229845637|ref|ZP_04465762.1| predicted 2-methylthioadenine synthetase [Haemophilus influenzae
           6P18H1]
 gi|229811437|gb|EEP47141.1| predicted 2-methylthioadenine synthetase [Haemophilus influenzae
           6P18H1]
          Length = 243

 Score =  106 bits (265), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 73/215 (33%), Positives = 119/215 (55%), Gaps = 17/215 (7%)

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
           VRL Y   +P    D LI    D   L+PYL +P+Q  S +ILK+M R  +     + I 
Sbjct: 34  VRLHYVYPYPH--VDDLIPLMAD-GTLLPYLDIPLQHASPKILKAMKRPGSIDRTLERIK 90

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           + R + PD+ + S FIVGFPGET++DF+  +D + +    +   FK+SP  G   ++M +
Sbjct: 91  QWREICPDLTLRSTFIVGFPGETEEDFQLLLDFLKEAQLDRVGCFKFSPVEGAHATDMAD 150

Query: 381 QVDENVKAERLLCLQKKLREQQVSFN--DACVGQIIEVLIEKHGKEKGKLVGRS----PW 434
           QV E+VK ER     +   +Q++S N     +G+ ++VL+++   ++  ++GRS    P 
Sbjct: 151 QVPEDVKEERFHRFMQ--LQQEISANRLKQKIGKTLDVLVDE--IDEDGIIGRSKADAPE 206

Query: 435 LQSVV----LNSKNHNIGDIIKVRITDVKISTLYG 465
           +  +V    L+  N  +GD+IKV IT+     L+G
Sbjct: 207 VDGLVYVDNLSGINVKVGDVIKVTITNSDEYDLWG 241


>gi|313217015|emb|CBY38208.1| unnamed protein product [Oikopleura dioica]
          Length = 1477

 Score =  106 bits (265), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 66/236 (27%), Positives = 114/236 (48%), Gaps = 36/236 (15%)

Query: 172 RKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQN 231
           R+  +   ++I  GC   CT+C   + RG   S  + ++V    +  + G+ E+ L  ++
Sbjct: 49  RRNALIEIISINTGCLNSCTYCKTKHARGDLASYPIDEIVARFEQAFEQGIVEVWLTSED 108

Query: 232 VNAW-RGKGLD------------GEKCTF----SDLLYSLSEIKGLVRLRYTTSHPRDMS 274
             A+ R  G +             E C      ++  Y L  ++G+ ++    +HPR   
Sbjct: 109 TGAYGRDIGTNIVELLNAVVKTIPEGCMMRIGMTNPPYILEHLEGIAKI---LNHPR--- 162

Query: 275 DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSD 334
                       +  +LH+PVQSGSD +L SM R +   ++ +++D +R+  PD  I++D
Sbjct: 163 ------------VYSFLHVPVQSGSDAVLNSMRREYNREDFCKVVDTLRANVPDCNIATD 210

Query: 335 FIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER 390
            I GFP ET++DF  T+ L +K  +   F  ++ PR GTP +   EQ+   V  ER
Sbjct: 211 IIAGFPTETEEDFDETISLCEKYKFPSLFMNQFFPRPGTPAAKW-EQIPRQVIKER 265


>gi|213419959|ref|ZP_03353025.1| hypothetical protein Salmonentericaenterica_20195 [Salmonella
           enterica subsp. enterica serovar Typhi str. E01-6750]
          Length = 231

 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 75/234 (32%), Positives = 124/234 (52%), Gaps = 19/234 (8%)

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYSLSEIKGLV 261
           V+ EA++L+D GV EI ++ Q+ +A+      R    +GE  K +   L   LS++    
Sbjct: 2   VLSEAKRLVDAGVKEILVISQDTSAYGVDVKHRTGFHNGEPMKTSMVSLCEQLSKLGVWT 61

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           RL Y   +P       + A G +   +PYL +P+Q  S RILK M R  +       I +
Sbjct: 62  RLHYVYPYPHVDDVIPLMAEGKI---LPYLDIPLQHASPRILKLMKRPGSVDRQLARIKQ 118

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
            R + P++ + S FIVGFPGET++DF+  +D + +    +   FKYSP  G   + + +Q
Sbjct: 119 WREICPELTLRSTFIVGFPGETEEDFQMLLDFLKEARLDRVGCFKYSPVEGAGANELPDQ 178

Query: 382 VDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS 432
           V E VK E   R + LQ+++  +++      VG+ I V++++  +E    +GRS
Sbjct: 179 VPEEVKEERWNRFMQLQQQISAERLQEK---VGREILVIVDEVDEEGA--IGRS 227


>gi|205356717|ref|ZP_03223478.1| hypothetical protein Cj8421_1025 [Campylobacter jejuni subsp.
           jejuni CG8421]
 gi|205345455|gb|EDZ32097.1| hypothetical protein Cj8421_1025 [Campylobacter jejuni subsp.
           jejuni CG8421]
          Length = 354

 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 84/330 (25%), Positives = 150/330 (45%), Gaps = 44/330 (13%)

Query: 103 VVVAGCVAQAEGEEILRRSPI-----------VNVVVGPQT-YYRLPELLERARFGKRVV 150
           V++ GC A ++G+E+L +  +           +N  +G +T +Y L  L          +
Sbjct: 8   VILTGCGAVSKGKELLDKKQVFGVLGASNKDKINEFLGAKTSFYELGNL--------NFI 59

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
           D D   E               +    AF+ IQEGCD  C++C++P  RG   S     +
Sbjct: 60  DKDIVCE--------------YENHTKAFVKIQEGCDFACSYCIIPSVRGKSRSVDEKAL 105

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270
           + +   L  NG  EI L G N+ ++   GL     T   LL  + +I G+ R+R  +  P
Sbjct: 106 LKQVEILGANGYSEIVLTGTNIGSY---GLKN-GTTLGKLLQKMGQILGIKRIRLGSLEP 161

Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330
             + +  ++   D   L  +LH+ +Q  S+++L+ M RR       ++ + I S     A
Sbjct: 162 AQLDESFLEIL-DEAWLERHLHIALQHTSEKMLRIMRRRSHTDNDLKLFNAIAS--KGYA 218

Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER 390
           + +DFIV  PGE+++ ++  +    +       +F +SPR  T  + M + ++  +  ER
Sbjct: 219 LGTDFIVAHPGESEELWQEALRNFKEFPLTHIHAFIFSPRNNTHSATMKDVINGTLAKER 278

Query: 391 LLCLQKKLREQQVSFNDACVGQI-IEVLIE 419
           L  L+  + +    F      Q+ +EVL+E
Sbjct: 279 LNTLKSIVEKNNYEFRKK--NQVSLEVLVE 306


>gi|225629588|ref|ZP_03787609.1| MiaB-like tRNA modifying enzyme [Wolbachia endosymbiont of
           Muscidifurax uniraptor]
 gi|225591558|gb|EEH12577.1| MiaB-like tRNA modifying enzyme [Wolbachia endosymbiont of
           Muscidifurax uniraptor]
          Length = 172

 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 64/164 (39%), Positives = 93/164 (56%), Gaps = 5/164 (3%)

Query: 237 GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQ 296
           G  L G+    S +   L +I  L RLR ++    ++ D L+    +   LMP+LHL +Q
Sbjct: 12  GTDLLGKPSLGSMIRRVLKDIPELKRLRLSSIDVAEVDDELMDLIANESRLMPHLHLSLQ 71

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
           SG++ ILK M RRH   +  +   +++S+RP+IA  +D I GFP ETD+ F+ T+DL+ K
Sbjct: 72  SGNNLILKRMKRRHNREQVIEFCHKMKSLRPNIAFGADIIAGFPTETDEMFQDTVDLLKK 131

Query: 357 IGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLRE 400
                  +F YS R  TP + M  QV ENV+ ER+    K LRE
Sbjct: 132 TNILYLHAFPYSERKSTPAARM-PQVPENVRKERV----KNLRE 170


>gi|86171407|ref|XP_966205.1| radical SAM protein, putative [Plasmodium falciparum 3D7]
 gi|46361171|emb|CAG25035.1| radical SAM protein, putative [Plasmodium falciparum 3D7]
          Length = 860

 Score =  105 bits (261), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 77/292 (26%), Positives = 140/292 (47%), Gaps = 27/292 (9%)

Query: 97  EGGDLLVVVAGCVAQAEGE-EILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYS 155
           EG ++ ++V GCV QAE + EI     +V    G     ++ +++E    G  V     S
Sbjct: 493 EGKNIKIIVCGCVPQAEKDMEIFENVSLV----GVNNIDKIVDVVENVINGYNVQYLKTS 548

Query: 156 VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEAR 215
                ++++ ++    RK      + I  GC   CT+C   + RG   S ++  + D   
Sbjct: 549 -----KKMTSLNLPKIRKNKYIEIININNGCLGNCTYCKTKFARGDLSSYNIRDITDRIT 603

Query: 216 KLIDN-GVCEITLLGQNVNAWRGKGLDGEK---CTFSDLLYSLSEIKGLVRL-----RYT 266
            + +   + EI L  ++  A+   G+D          ++L S+     ++RL      Y 
Sbjct: 604 YVCNEENIKEIWLTSEDTGAY---GIDINTDIVNLLKNILKSVEHTNVMIRLGMTNPPYI 660

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
             H +D+  C +  H ++     ++H+PVQSGS+ +LK+MNR +T  ++  +++ +R   
Sbjct: 661 LKHIKDI--CTLLKHKNM---YEFIHIPVQSGSNNVLKNMNREYTIEDFIFLVENLRKYV 715

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           P+I IS+D I GFP E++ D + T+ L+    +      ++ PR GT   NM
Sbjct: 716 PNITISTDIICGFPYESEQDHQNTVHLIKNFQFPILNISQFYPRRGTVAYNM 767



 Score = 41.6 bits (96), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 17/71 (23%), Positives = 41/71 (57%), Gaps = 2/71 (2%)

Query: 22  IVPQRF--FVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEK 79
           I+P+ +  + KS+GC  N  DS  M  +  + G++ V  +++ D+ ++N+C ++  + E 
Sbjct: 238 ILPENYKIYFKSFGCAHNSSDSEFMMGLLANYGFKFVKKIEECDICIVNSCTVKNPSEES 297

Query: 80  VYSFLGRIRNL 90
           + + +  ++ L
Sbjct: 298 MKTIINYVKKL 308


>gi|254448855|ref|ZP_05062311.1| 2-methylthioadenine synthetase [gamma proteobacterium HTCC5015]
 gi|198261545|gb|EDY85834.1| 2-methylthioadenine synthetase [gamma proteobacterium HTCC5015]
          Length = 277

 Score =  104 bits (260), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 78/280 (27%), Positives = 127/280 (45%), Gaps = 34/280 (12%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N  DS R+     S+GY+       A+L+++NTC   + A ++    +G     
Sbjct: 18  SLGCPKNTVDSERILTQLRSEGYQISPDYQGAELVIVNTCGFIDAAKKESLDTIGE---- 73

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               ++E G   V+V GC+   E  +I    P V  V GP  Y  + + +         V
Sbjct: 74  ---ALQENGK--VIVTGCMGATE-SDITEVHPGVLSVSGPHQYEAVIKSVHEH------V 121

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
                  D F  L +   G        A+L I EGCD  C+FC++P  RG  +SR + +V
Sbjct: 122 TPPPQSHDPFIDL-VPPQGIKLTPKHYAYLKISEGCDHTCSFCIIPSMRGKLVSRPIGEV 180

Query: 211 VDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYSLSEIKG 259
           +DEA++L ++GV E+ ++ Q+ +A           W G+ +   K    +L  +L E+  
Sbjct: 181 LDEAKRLAESGVKELLIISQDTSAYGSDVGYKLDFWNGRPI---KTRLKELCEALGELGV 237

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
            VRL Y   +P       + A G    ++PYL +P  + +
Sbjct: 238 WVRLHYVYPYPSVDDIIPLMAEGK---ILPYLDIPFHTPT 274


>gi|82915234|ref|XP_729019.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL]
 gi|23485813|gb|EAA20584.1| Drosophila melanogaster GH28477p-related [Plasmodium yoelii yoelii]
          Length = 817

 Score =  103 bits (257), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 78/307 (25%), Positives = 147/307 (47%), Gaps = 28/307 (9%)

Query: 94  RIKEGGDLLVVVAGCVAQAEGE-EILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDT 152
           R   G D+ ++V GCV QAE + +I     +V    G     ++ + +E    G  V   
Sbjct: 448 RTNSGKDIKIIVCGCVPQAENDMKIFENVSLV----GVNNIDKIVDAVENVINGYNV--- 500

Query: 153 DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVD 212
            Y  + K  +++ ++    RK      + I  GC   CT+C   + RG   S ++  +V+
Sbjct: 501 KYLKQSK--KMTSLNLPKIRKNKFIEIININNGCLGNCTYCKTKFARGNLSSYNIKDIVN 558

Query: 213 EARKL-IDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK--------GLVRL 263
             + +   + + EI L  ++  A+   G+D      + L   L  ++        G+   
Sbjct: 559 RIKHVYTKDNIKEIWLTSEDSGAY---GIDLNTNIVNLLKEILEYVQDTDVMIRIGMTNP 615

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
            Y   H +D+  C +  H ++     ++H+PVQSGS+ +LK MNR +   ++  ++D +R
Sbjct: 616 PYILKHVKDI--CKLLKHKNM---YEFIHIPVQSGSNNVLKDMNREYKIEDFIYLVDNLR 670

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              P++ I++D I GFP E+++D   T++L+ K  +      ++ PR GT   NM +++D
Sbjct: 671 KYVPNMTIATDIICGFPYESENDHLETVNLIKKYKFPILNISQFYPRRGTVAYNM-KKID 729

Query: 384 ENVKAER 390
             +  +R
Sbjct: 730 TKIVKKR 736



 Score = 40.0 bits (92), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 16/66 (24%), Positives = 38/66 (57%), Gaps = 2/66 (3%)

Query: 24  PQRF--FVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           P+ +  + KS+GC  N  DS  M  +  + G++ V +++D D+ ++N+C ++  + E + 
Sbjct: 248 PENYNIYFKSFGCAHNSSDSEFMMGLLSNYGFKFVKNIEDCDICIVNSCTVKNPSEESMK 307

Query: 82  SFLGRI 87
           + +  +
Sbjct: 308 TIINYV 313


>gi|221057894|ref|XP_002261455.1| hypothetical protein, conserved [Plasmodium knowlesi strain H]
 gi|194247460|emb|CAQ40860.1| hypothetical protein, conserved [Plasmodium knowlesi strain H]
          Length = 750

 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 77/290 (26%), Positives = 142/290 (48%), Gaps = 27/290 (9%)

Query: 99  GDLLVVVAGCVAQAEGE-EILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVE 157
           GD+ ++V GCV QAE + EI     +V    G     ++ +++E    G  V    +S  
Sbjct: 386 GDIKIIVCGCVPQAEKDMEIFENVSLV----GVTNIDKIVDVVENVINGYNVRYLKHS-- 439

Query: 158 DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKL 217
              ++++ ++    RK      + I  GC   CT+C   + RG   S ++  +++  + +
Sbjct: 440 ---KKMTSLNLPKIRKNKYIEIININNGCLGNCTYCKTKFARGDLASYNIPDIINRIKHV 496

Query: 218 IDN-GVCEITLLGQNVNAWRGKGLDGEKCT---FSDLLYSLSEIKGLVRL-----RYTTS 268
            +   + EI L  ++  A+   G+D          ++L ++S    ++RL      Y   
Sbjct: 497 CNEENIKEIWLTSEDTGAY---GIDLNTNIVKLLKEILDTISNSDVMIRLGMTNPPYILK 553

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
           H +D+  C +  H ++     ++H+PVQSGS+R+LK+MNR +   ++  +++ +R   P+
Sbjct: 554 HIKDI--CNLLKHKNM---YEFIHIPVQSGSNRVLKNMNREYEIEDFIYLVENLRKDVPN 608

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           I I++D I GFP E + D   T+DLV K  +      ++ PR GT    M
Sbjct: 609 ITIATDIICGFPYEMEKDHLETVDLVKKYQFPILNISQFYPRRGTVAYGM 658



 Score = 44.7 bits (104), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 19/80 (23%), Positives = 47/80 (58%), Gaps = 4/80 (5%)

Query: 18  VDQC--IVPQRF--FVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIR 73
           +++C  I+P+++  + KS+GC  N  DS  M  +  + G++ V S+++ D+ ++N+C ++
Sbjct: 201 LNECAVILPEKYKIYFKSFGCAHNSSDSEFMMGLLGNYGFQFVKSVEECDICIINSCTVK 260

Query: 74  EKAAEKVYSFLGRIRNLKNS 93
             + E + + +  +  L  +
Sbjct: 261 NPSEESMKTIINYVHKLNKT 280


>gi|68068881|ref|XP_676351.1| hypothetical protein [Plasmodium berghei strain ANKA]
 gi|56496008|emb|CAH98348.1| conserved hypothetical protein [Plasmodium berghei]
          Length = 784

 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 78/307 (25%), Positives = 146/307 (47%), Gaps = 28/307 (9%)

Query: 94  RIKEGGDLLVVVAGCVAQAEGE-EILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDT 152
           R   G D+ ++V GCV QAE + +I     +V    G     ++ + +E    G  V   
Sbjct: 415 RTSSGKDIKIIVCGCVPQAENDMKIFENVSLV----GVNNIDKIVDAVENVINGYNV--- 467

Query: 153 DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVD 212
            Y  + K  +++ ++    RK      + I  GC   CT+C   + RG   S ++  +V 
Sbjct: 468 KYLKQSK--KMTSLNLPKIRKNKFIEIININNGCLGNCTYCKTKFARGNLSSYNIKDIVS 525

Query: 213 EARKL-IDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK--------GLVRL 263
             + +   + + EI L  ++  A+   G+D      + L   L  ++        G+   
Sbjct: 526 RIKYVCTKDNIKEIWLTSEDSGAY---GIDLNTNIVNLLKEILDYVQDTDVMIRIGMTNP 582

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
            Y   H +D+  C +  H ++     ++H+PVQSGS+ +LK MNR +   ++  ++D +R
Sbjct: 583 PYILKHVKDI--CKLLKHKNM---YEFIHIPVQSGSNNVLKDMNREYKIEDFIYLVDNLR 637

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              P++ I++D I GFP E+++D   T++L+ K  +      ++ PR GT   NM +++D
Sbjct: 638 KYVPNMTIATDIICGFPYESENDHLETVNLIKKYKFPILNISQFYPRRGTVAYNM-KKID 696

Query: 384 ENVKAER 390
             +  +R
Sbjct: 697 TKIVKKR 703



 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 45/78 (57%), Gaps = 2/78 (2%)

Query: 22  IVPQRF--FVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEK 79
           I+P+ +  + KS+GC  N  DS  M  +  + G++ V ++DD D+ ++N+C ++  + E 
Sbjct: 215 IIPENYNIYFKSFGCAHNSSDSEFMMGLLSNYGFQFVKNIDDCDICIVNSCTVKNPSEES 274

Query: 80  VYSFLGRIRNLKNSRIKE 97
           + + +  + NL  SR  E
Sbjct: 275 MKTIIKYVNNLNKSRNNE 292


>gi|159111403|ref|XP_001705933.1| tRNA 2-methylthioadenosine synthase [Giardia lamblia ATCC 50803]
 gi|157434024|gb|EDO78259.1| tRNA 2-methylthioadenosine synthase [Giardia lamblia ATCC 50803]
          Length = 525

 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 121/519 (23%), Positives = 217/519 (41%), Gaps = 105/519 (20%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQG---------YERVNSMDDADLIVLNTCHIREKA 76
           R  + + GC  N  +S  +     + G         Y    S  D D++ +N+C ++  +
Sbjct: 25  RVMMVTMGCGHNAAESDIIASALQTAGAVITHSNGKYITPESARDVDVLYINSCTVKNPS 84

Query: 77  AEKVYSFLGRIRNLKNSRIKEGGDL--LVVVAGCVAQAEG--EEILRRSP-----IVNVV 127
            +K +             +++G ++  +VV+ GCV Q+ G   + LR++      I++ V
Sbjct: 85  EDKAFV-----------HVQKGLEVGTVVVLGGCVPQSYGTVNDELRKASAAKQLIISGV 133

Query: 128 VGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGG------------------ 169
           +  Q    LP LL  A     +++  + ++         D                    
Sbjct: 134 LTQQWLAALPRLLREA-IDLHILNNSHLLQPALRMTQPSDKAGVPAAISYVTKEATKDVE 192

Query: 170 --------YNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARK-LIDN 220
                    +R   +   ++   GC   CT+C   ++RG   S  L  ++   R  L D 
Sbjct: 193 VEYLKCTPVHRANPIIDIISTGSGCMGSCTYCKTCHSRGRLRSVPLDTLLARIRSSLADP 252

Query: 221 GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM------- 273
            + E+ L G++  AW G+  D    TF+ LL  + ++       + T +P          
Sbjct: 253 IIRELWLTGEDTLAW-GRESDA---TFAVLLQEVQKL-------FETENPTHKMLKIGMT 301

Query: 274 -SDCLIKAHGDLDVLM------PYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
             D +I     L   M       +LHLPVQSGSDRIL  M R +    + +   +++S  
Sbjct: 302 DPDSVINQEDSLISFMRCKYVYKFLHLPVQSGSDRILTLMRRHYDIETFLRSCSKLQSAV 361

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLV-----DKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           PD+ + +D I GFPGETD+D   +++L      D   +      +Y  R  TP ++M EQ
Sbjct: 362 PDLCLDTDIICGFPGETDEDHAQSLNLFRNLKEDAPRFQVVNITQYYARKNTPAASM-EQ 420

Query: 382 VDENVKAERLLCLQKKLREQQVSF-NDACVGQIIEVLI------EKHGKEKGKLVGRSPW 434
           V  + K ER   + + ++    SF  D   GQ+ ++++      E HG++ G   G++  
Sbjct: 421 VPASKKRERTREMSEVVKN---SFRRDQYHGQVHDIMVLERLQTENHGRQYG---GKTYN 474

Query: 435 LQSVVLNSKNHNI----GDIIKVRITDVKISTLYGELVV 469
             +V + + +  +    G  ++VRIT      L G ++ 
Sbjct: 475 NLTVAIEAVDQEVPIKLGSYVRVRITGSTRVALIGSVMT 513


>gi|260587678|ref|ZP_05853591.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Blautia hansenii DSM
           20583]
 gi|260541943|gb|EEX22512.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Blautia hansenii DSM
           20583]
          Length = 165

 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 55/155 (35%), Positives = 92/155 (59%), Gaps = 1/155 (0%)

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           MNRR+   +Y  ++++IR+  PDI++++D IVGFPGET++DF  T+D+V K+ Y  AF+F
Sbjct: 1   MNRRYDKEKYLNLVEKIRTAIPDISLTTDIIVGFPGETEEDFLETVDVVKKVRYDSAFTF 60

Query: 366 KYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKE 424
            YS R GTP + M  QV E V  +R   L + ++      +    G+++EVL+ E++ ++
Sbjct: 61  IYSKRTGTPAAVMENQVSEGVVKDRFNRLLETVQSIGREMSARDTGKVMEVLVEEQNSQD 120

Query: 425 KGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVK 459
           K  + GR      V        IG + +VR+ + +
Sbjct: 121 KHLMTGRLSNNLLVHFEGDTSLIGQLCQVRLDECR 155


>gi|268609251|ref|ZP_06142978.1| RNA modification enzyme, MiaB family protein [Ruminococcus
           flavefaciens FD-1]
          Length = 262

 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 73/274 (26%), Positives = 130/274 (47%), Gaps = 20/274 (7%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R F  ++GC++N Y++  M+ +F  +G+E + S + AD +V+N+C +             
Sbjct: 3   RVFFITFGCKVNHYETECMKSLFRERGFEILRSQEGADAVVINSCTVTSSGDS------- 55

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R+            D ++ + GC  QA  +E  + +   +++VG +    +P L+E    
Sbjct: 56  RVLAALRKARAALPDAVIALTGCYPQASPDEAAKLTD-ADIIVGTKDRSGIPALVEECLA 114

Query: 146 GK-RVVD-TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            + R+V  + Y   + FE +       N +    AF+ IQ+GCD+FC++C++P+ RG   
Sbjct: 115 DRHRIVSISPYIKGEPFEPIVCSRFDDNTR----AFVKIQDGCDQFCSYCMIPFARGRCR 170

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-RGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           S+ L  V  E   +  NG  EI L G N+  + R  G D      +D +   S   G+ R
Sbjct: 171 SKPLEIVRQEIADIAANGKKEIVLTGINLAFYGREFGYD-----MADAVKVCSGTGGIER 225

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQ 296
           +R  +  P  MS+ ++     +    P  HL +Q
Sbjct: 226 IRLGSLEPEMMSEDMLMRLAAIPQFCPQFHLSLQ 259


>gi|149194100|ref|ZP_01871198.1| hypothetical protein CMTB2_03408 [Caminibacter mediatlanticus TB-2]
 gi|149136053|gb|EDM24531.1| hypothetical protein CMTB2_03408 [Caminibacter mediatlanticus TB-2]
          Length = 433

 Score =  101 bits (251), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 84/351 (23%), Positives = 172/351 (49%), Gaps = 25/351 (7%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ ++ S GC  N+ DS  M     ++ YE   + ++ADLI++NTC     A E+    +
Sbjct: 2   KKLYIASLGCVKNLIDSEVMLGKLKNE-YEITLNPNEADLIIVNTCGFINLAKEESIDTI 60

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             + N K    K      +VV GC+++   + + +  P V++  G   + R+ E+++   
Sbjct: 61  LELANEKKENAK------LVVTGCLSERYKDILPKEIPEVDIWSGVGDFDRIDEIIKSN- 113

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
             K+V      +    +R+ I    Y+      A++ + EGC++ C+FC +P  +G   S
Sbjct: 114 -SKKVFSNKVFLIHNEDRV-ITGSSYH------AYIKLSEGCNQKCSFCAIPSFKGKLQS 165

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAW-RGKGL-DGEKCTFSDLLYSLSEIKGLVR 262
           R + ++++E ++L D G  + +L  Q+ +++ R KG+ DG      + L    +    + 
Sbjct: 166 REIEEIINEIKRLKDKGYKDFSLASQDSSSYLRDKGIRDG-----LERLIDEIDKIDDIN 220

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R    +P   +  LI+       ++ Y  +P+Q  + ++LK M R  +  + +++++ +
Sbjct: 221 VRILYLYPATTTKRLIRKIFSSKNVVNYFDIPIQHITPKMLKIMKRPGSVNKLKELLNEM 280

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
           +  R D  + +  IVG PGE+ +DF   M  +++  + +   F YS    T
Sbjct: 281 K--REDSFVRTSIIVGHPGESHEDFEELMQFLEEYNFDRVNVFAYSDEENT 329


>gi|217032136|ref|ZP_03437635.1| hypothetical protein HPB128_186g2 [Helicobacter pylori B128]
 gi|216946126|gb|EEC24735.1| hypothetical protein HPB128_186g2 [Helicobacter pylori B128]
          Length = 354

 Score =  101 bits (251), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 78/315 (24%), Positives = 144/315 (45%), Gaps = 30/315 (9%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA-EKVYSFLGRIRN 89
           S GC  N+ DS  M    ++  Y   N    AD+I++NTC   E A  E + + L   ++
Sbjct: 13  SLGCSKNLVDSEVMLGKLYN--YTLTNDAKKADVILINTCGFIESAKQESIQTILNAAKD 70

Query: 90  LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149
            K     EG   +++ +GC+++   +EI    P V++  G   Y ++  ++ +       
Sbjct: 71  KK-----EGA--ILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMIAKK------ 117

Query: 150 VDTDYSVEDKFERLSIVDGGYNRK----RGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                  +++F     +   YN +      V A++ I EGC++ C+FC +P  +G   SR
Sbjct: 118 -------QNQFSEQVFLSEHYNARIITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSR 170

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            L  ++ E   L   G  ++T + Q+ +++      G+K     L+ ++ + + L   R 
Sbjct: 171 ELDSILKEVEDLALKGYKDMTFIAQDSSSFLYD--KGQKDGLIQLIRAIDKQQALKSARI 228

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
              +P   +  LI A     +   Y  +P+Q  SD +LK M R  +   + +++D ++ V
Sbjct: 229 LYLYPSSTTLELIGAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQV 288

Query: 326 RPDIAISSDFIVGFP 340
           +    I S  IVG P
Sbjct: 289 KESF-IRSTIIVGHP 302


>gi|2462120|emb|CAA72027.1| bc48b [Bacillus cereus ATCC 10987]
          Length = 226

 Score =  101 bits (251), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 57/148 (38%), Positives = 90/148 (60%), Gaps = 7/148 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++F++++YGCQMN +D+  M  +F + GYE   S ++AD+++LNTC IRE A  KV+  L
Sbjct: 66  RKFYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEEADVVLLNTCAIRENAENKVFGEL 125

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G ++ LK    +   DLL+ V GC++Q E    +I++++  V++V G    +RLP +L+ 
Sbjct: 126 GHLKALK----RRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKD 181

Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGG 169
           A F K  V   +S E D  E L  V  G
Sbjct: 182 AMFSKETVVEVWSKEGDVIENLPKVRRG 209


>gi|188529339|gb|ACD62415.1| CDKAL1-like protein [Drosophila silvestris]
          Length = 248

 Score =  101 bits (251), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 58/181 (32%), Positives = 100/181 (55%), Gaps = 7/181 (3%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +LH+PVQSGSD +L  M R +   ++  ++D +RS  P + I++D I GFP ET+ DF  
Sbjct: 19  FLHVPVQSGSDSVLGEMKREYCRKDFEHVVDLLRSRVPGLTIATDIICGFPTETEQDFEE 78

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDAC 409
           TM L +K  +   F  ++ PR GTP +  +E++  N+  +R     K+L +   S+    
Sbjct: 79  TMTLCEKYQFPILFINQFFPRPGTPAAK-IERIPANLVKKR----TKRLTDLFYSYEPYA 133

Query: 410 --VGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
              GQ+  VL+ +   +K   VG +   + V+L  + + +G  ++VRIT     ++ GE+
Sbjct: 134 EREGQLYTVLVTEISHDKLHYVGHNKSYEQVLLPMRKNLLGTRVRVRITSSSKFSMMGEI 193

Query: 468 V 468
           +
Sbjct: 194 L 194


>gi|261339142|ref|ZP_05967000.1| hypothetical protein ENTCAN_05363 [Enterobacter cancerogenus ATCC
           35316]
 gi|288318985|gb|EFC57923.1| RNA modification enzyme, MiaB family [Enterobacter cancerogenus
           ATCC 35316]
          Length = 272

 Score =  100 bits (250), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 75/258 (29%), Positives = 126/258 (48%), Gaps = 31/258 (12%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P +    S GC  N+ DS R+     ++GY+ V S D+AD++++NTC   + A ++    
Sbjct: 7   PPKIGFVSLGCPKNLVDSERILTELRTEGYDVVPSYDNADMVIVNTCGFIDSAVQESLEA 66

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G         + E G   V+V GC+  A+ ++I    P V  + GP +Y ++ E +   
Sbjct: 67  IGEA-------LTENGK--VIVTGCLG-AKVDQIREVHPKVLEITGPHSYEQVLEHVHH- 115

Query: 144 RFGKRVVDTDYSVEDKFER-LSIV-DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
                     Y  + K    LS+V + G        A+L I EGC+  CTFC++P  RG 
Sbjct: 116 ----------YVPKPKHNPFLSLVPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGD 165

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYS 253
            +SR + +V+ EA++L D GV E+ ++ Q+ +A+      R    +GE  K +   L   
Sbjct: 166 LVSRPIGEVLAEAKRLADAGVKELLVISQDTSAYGVDVKHRSGFHNGEPVKTSMVGLCEQ 225

Query: 254 LSEIKGLVRLRYTTSHPR 271
           L+++    RL Y   +P 
Sbjct: 226 LAKLGIWTRLHYVYPYPH 243


>gi|220928478|ref|YP_002505387.1| radical SAM protein [Clostridium cellulolyticum H10]
 gi|219998806|gb|ACL75407.1| Radical SAM domain protein [Clostridium cellulolyticum H10]
          Length = 416

 Score =  100 bits (250), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 87/380 (22%), Positives = 168/380 (44%), Gaps = 51/380 (13%)

Query: 33  GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92
            C     D +++E    + GYE V     AD IV  TC    + A+  ++ + R+++L  
Sbjct: 12  NCSRRQMDMVKLESYLSANGYEVVEDEKQADQIVYTTCGFINETAQVAFNEIERLKSLPA 71

Query: 93  SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDT 152
                     ++V GC+   + E                          +   GK V +T
Sbjct: 72  E---------LIVTGCLPDTDSE-----------------------TFNKIHSGKVVRNT 99

Query: 153 D-YSVEDKF---ERLSIVDGGYNRKRGVTAFLTIQ--EGCDKFCTFCVVPYTRGIEISRS 206
           + Y  +D F    +   +   ++   G   +  ++   GC + C++C   +  G   S+ 
Sbjct: 100 ELYKFDDVFGGDTKFQDIPDAHDMPWGKGEYFCVEVSRGCPENCSYCATKWAVGKMKSKP 159

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
           + + ++E  +   +   ++ + G NV A+   GLD ++ TF  L+ +L       +    
Sbjct: 160 IQKCIEEIEEFKKSTFSKVVINGDNVGAY---GLDIKE-TFGTLVSALPIEDEKYKAYID 215

Query: 267 TSHPRDM---SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           + HPR +    D ++ A       M  L   +Q+G++R+L+ M R+    + ++    I+
Sbjct: 216 SLHPRWLLLYYDAVLAAISKNRFGM--LVSAIQAGNERVLELMRRKADMKKLKEAFIEIK 273

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLV--DKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
              P+I + ++ IVGFP E++ DF  ++D +   K+ +   F+F  SP+ GT  + +  Q
Sbjct: 274 QKSPEIVLGTEVIVGFPTESESDFIESVDFILSTKLDWGNIFAF--SPKKGTEAAAIKGQ 331

Query: 382 VDENVKAERLLCLQKKLREQ 401
           V+E  K  R+  L +KL+E 
Sbjct: 332 VEEAEKIRRINYLVEKLKEN 351


>gi|265985466|ref|ZP_06098201.1| conserved hypothetical protein [Brucella sp. 83/13]
 gi|264664058|gb|EEZ34319.1| conserved hypothetical protein [Brucella sp. 83/13]
          Length = 266

 Score =  100 bits (249), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 86/282 (30%), Positives = 126/282 (44%), Gaps = 38/282 (13%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  FV S GC   + DS R+     S+GYE     D ADL+++NTC   + A ++    
Sbjct: 4   PRVSFV-SLGCPKALVDSERIITGLRSEGYEISRKHDGADLVIVNTCGFLDSARDESLEA 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +    N       E G   V+V GC+  AE + I  R P V  + GPQ Y  +       
Sbjct: 63  ISLALN-------ENGK--VIVTGCLG-AEPDVIRERHPNVLAITGPQAYESV------- 105

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
                V +      D F  L    G     R   A+L I EGC   C+FC++P  RG  +
Sbjct: 106 --MNAVHEVAPPAHDPFVDLVPPQGVKLTPRHY-AYLKISEGCSNRCSFCIIPALRGDLV 162

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE-----------KCTFSDLLY 252
           SR +++V+ EA KL+   V EI ++ Q+ +A+   GLD +           +  F DL  
Sbjct: 163 SRPINEVLREAEKLVQADVKEILVISQDTSAY---GLDIKYQEAMWQDRTVRTKFLDLSR 219

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP 294
            L E+   VR+ Y   +P       + A G    ++PYL  P
Sbjct: 220 ELGEMGVWVRMHYVYPYPHVDEVIPLMAEGK---ILPYLIFP 258


>gi|213585311|ref|ZP_03367137.1| hypothetical protein SentesTyph_30295 [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
          Length = 221

 Score =  100 bits (248), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 68/214 (31%), Positives = 110/214 (51%), Gaps = 24/214 (11%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  FV S GC  N+ DS R+     ++GY+ V   DDAD++++NTC   + A ++    
Sbjct: 8   PKIGFV-SLGCPKNLVDSERILTELRTEGYDVVPHYDDADMVIVNTCGFIDSAVQESLEA 66

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G   N       E G   V+V GC+   E ++I    P V  + GP +Y ++ + +   
Sbjct: 67  IGEALN-------ENGK--VIVTGCLGAKE-DQIREVHPKVLEITGPHSYEQVLQHVHH- 115

Query: 144 RFGKRVVDTDYSVEDKFER-LSIV-DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
                     Y  + K    LS+V + G        A+L I EGC+  CTFC++P  RG 
Sbjct: 116 ----------YVPKPKHNPFLSLVPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGD 165

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW 235
            +SR +  V+ EA++L+D GV EI ++ Q+ +A+
Sbjct: 166 LVSRPIGDVLSEAKRLVDAGVKEILVISQDTSAY 199


>gi|156101079|ref|XP_001616233.1| tRNA modifying enzyme [Plasmodium vivax SaI-1]
 gi|148805107|gb|EDL46506.1| tRNA modifying enzyme, putative [Plasmodium vivax]
          Length = 799

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 77/292 (26%), Positives = 143/292 (48%), Gaps = 31/292 (10%)

Query: 99  GDLLVVVAGCVAQAEGE-EILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVE 157
           GD+ ++V GCV QAE + EI     +V V        ++ +++E    G       Y+V 
Sbjct: 435 GDIKIIVCGCVPQAEKDMEIFENVSLVGVT----NIDKIVDVVENVING-------YNVR 483

Query: 158 --DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEAR 215
              + ++++ ++    RK      + I  GC   CT+C   + RG   S ++  +++  +
Sbjct: 484 YLKQAKKMTSLNLPKIRKNKYIEIININNGCLGNCTYCKTKFARGDLASYNIPDIINRIK 543

Query: 216 KLI-DNGVCEITLLGQNVNAWRGKGLDGEKCT---FSDLLYSLSEIKGLVRL-----RYT 266
            +  +  + EI L  ++  A+   G+D          ++L ++S    ++RL      Y 
Sbjct: 544 HVCSEENIKEIWLTSEDTGAY---GIDLNTNIVKLLKEILDTISNSDVMIRLGMTNPPYI 600

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
             H +D+  C +  H ++     ++H+PVQSGS+R+LK+MNR +   ++  +++ +R   
Sbjct: 601 LKHVKDI--CNLLKHKNM---YEFIHIPVQSGSNRVLKNMNREYEIEDFIYLVENLRKDV 655

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           P+I I++D I GFP E + D   T+DLV K  +      ++ PR GT    M
Sbjct: 656 PNITIATDIICGFPYEMEKDHVETVDLVKKYQFPILNISQFYPRRGTVAYGM 707



 Score = 44.3 bits (103), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 19/80 (23%), Positives = 47/80 (58%), Gaps = 4/80 (5%)

Query: 18  VDQC--IVPQRF--FVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIR 73
           +++C  I+P+++  + KS+GC  N  DS  M  +  + G++ V S+++ D+ ++N+C ++
Sbjct: 245 LNECGIILPEKYKIYFKSFGCAHNSSDSEFMMGLLGNYGFQFVKSVEECDICIINSCTVK 304

Query: 74  EKAAEKVYSFLGRIRNLKNS 93
             + E + + +  +  L  +
Sbjct: 305 NPSEESMKTIINYVNKLNKA 324


>gi|224373407|ref|YP_002607779.1| hypothetical protein NAMH_1386 [Nautilia profundicola AmH]
 gi|223589096|gb|ACM92832.1| conserved hypothetical protein [Nautilia profundicola AmH]
          Length = 432

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 93/385 (24%), Positives = 192/385 (49%), Gaps = 40/385 (10%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ ++ S GC  N+ DS  M     ++ Y   ++  +ADL+++NTC     A E+    +
Sbjct: 2   KKLYLASLGCVKNLIDSEVMLGKLKNE-YTLTDNPGEADLLIVNTCGFINPAKEESIETI 60

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE--R 142
             + N K    KE    ++ V GC+++   + + +  P V+V  G   + ++ EL++   
Sbjct: 61  LELANEK----KESA--ILAVTGCLSERYKDILPKEIPEVDVWSGVGDFDKIDELVKTKS 114

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           ++F   V    Y + ++ ER+ I    Y+      A++ + EGC++ C FC +P  +G  
Sbjct: 115 SKFSPNV----YLIHNE-ERV-ITGSSYH------AYIKLSEGCNQKCAFCAIPNFKGRL 162

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-RGKGLDGEKCTFSDLLYSLSEIKGL- 260
            SR + ++++E ++L   G  + +L  Q+ +++ R KG+   K     L+  + +I+G+ 
Sbjct: 163 NSREIPEIIEEIKRLKAQGFKDFSLASQDSSSYLRDKGI---KDGLERLIDEIDKIEGIT 219

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
           VR+ Y   +P   +  LI+      V+  Y  +P+Q  S+++LK M R  +       +D
Sbjct: 220 VRILYL--YPATTTKKLIRRIFASPVVENYFDMPIQHISEKMLKIMRRPGS-------VD 270

Query: 321 RIRSVRPDIA-----ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
           +++S+  ++      I +  IVG PGE+++DF    + + +  + +   F YS    T  
Sbjct: 271 KLKSLLYEMKKEFSFIRTSVIVGHPGESEEDFEELKNFIKEFEFDRVNVFAYSDEEDTAA 330

Query: 376 SNMLEQVDENVKAERLLCLQKKLRE 400
               +++ +N+  +R   L K +++
Sbjct: 331 FKRKDKISQNIIDQRAKELGKTVKQ 355


>gi|76156036|gb|AAX27274.2| SJCHGC03417 protein [Schistosoma japonicum]
          Length = 228

 Score = 97.8 bits (242), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 63/196 (32%), Positives = 102/196 (52%), Gaps = 17/196 (8%)

Query: 287 LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDD 346
           + P +HLP QSGS  +L++M R +T   Y +++  IR + P+++++SDFI GF GET++D
Sbjct: 8   ICPNIHLPAQSGSSVVLENMRRGYTRQAYMELVATIREIIPNVSLTSDFIAGFCGETEED 67

Query: 347 FRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML-EQVDENVKAERLLCLQKKLREQQVSF 405
              T++L++++GY+  + F YS R  T   + L + V   VK  R   L    R + + F
Sbjct: 68  HSQTLELIERVGYSFCYCFPYSMREKTFAYHHLTDDVPAEVKRRRFNELLVLSRNKSLEF 127

Query: 406 NDACVGQIIEVLIEKHG-KEKGKLVGRSP-----------WLQSVVLNSKNHNI----GD 449
           N   +G +  VL E    +   ++ GR+             L S   N+K+  I    GD
Sbjct: 128 NRKQIGTVQLVLAEGPSRRSTSQVFGRNDCNIKVIFDQEVTLPSTTANNKSSRILVKPGD 187

Query: 450 IIKVRITDVKISTLYG 465
            + V+I D    TL G
Sbjct: 188 YVVVKIVDATSQTLRG 203


>gi|260220928|emb|CBA28986.1| Ribosomal protein S12 methylthiotransferase rimO [Curvibacter
           putative symbiont of Hydra magnipapillata]
          Length = 507

 Score = 97.4 bits (241), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 85/305 (27%), Positives = 131/305 (42%), Gaps = 41/305 (13%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
            P+  FV S GC   + DS  +     ++GY+   +   ADL+++NTC   + A ++   
Sbjct: 25  APKVGFV-SLGCPKALTDSELILTQLSAEGYQTSKTFQGADLVIVNTCGFIDDAVKESLD 83

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAE---GEEILRR-SPIVNVVVGPQTYYRLPE 138
            +G     +N R        V+V GC+       GE ++R+  P V  V GP       E
Sbjct: 84  TIGEALA-ENGR--------VIVTGCLGAKTTDGGENMVRQMHPKVLAVTGPHATQ---E 131

Query: 139 LLERARFGKRVVDTDYSVEDKFERL---SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
           +++                D F  L   S    G        A+L I EGC+  CTFC++
Sbjct: 132 VMDAVHLNLP------KPHDPFLDLVPQSFGVAGVKLTPRHYAYLKISEGCNHRCTFCII 185

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEK 244
           P  RG  +SR +  V+ EAR L + GV E+ ++ Q+ +A           W GK +    
Sbjct: 186 PSMRGDLVSRPIGDVLSEARALFEGGVKELLVISQDTSAYGVDVKYRTGFWDGKPVKTRM 245

Query: 245 CTFSDLLYSLSEIKG-LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
                 L  L+E  G  VRL Y   +P       + A G    ++PYL +P+Q     +L
Sbjct: 246 LELVQALGELAEPYGAWVRLHYVYPYPSVDEIVPLMATGR---VLPYLDVPLQHSHPDVL 302

Query: 304 KSMNR 308
           + M R
Sbjct: 303 RRMKR 307


>gi|224418855|ref|ZP_03656861.1| 2-methylthioadenine synthetase [Helicobacter canadensis MIT
           98-5491]
          Length = 278

 Score = 97.4 bits (241), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 71/291 (24%), Positives = 138/291 (47%), Gaps = 20/291 (6%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA-EKVY 81
           + ++  + S GC  N+ DS  M        YE    +++AD++++NTC   E A  E + 
Sbjct: 1   MQKKLHLISLGCTKNLVDSEVMLGKLSE--YENTQEINEADVVIVNTCGFIEAAKKESIQ 58

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           + L  +   K   I       +V +GC+++   +E+    P ++++ G   Y ++ +++E
Sbjct: 59  TLLEALETKKQGAI-------LVASGCLSERYAKELKEEIPELDIITGVGDYDKIDKMIE 111

Query: 142 RARFGKRVVDTDYSV--EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
             + G++++     V   D+  +  I+ G       + A++ + EGC++ C+FC +P  +
Sbjct: 112 ERQKGEKILSNAKGVFLADETNK-RIISGS-----KIHAYIKLSEGCNQKCSFCAIPSFK 165

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-RGKGL-DGEKCTFSDLLYSLSEI 257
           G   SR+L   + E R L   G  + T + Q+ +++ R  G+ DG     S +     E 
Sbjct: 166 GKLHSRTLESTLKEVRNLASQGYSDFTFISQDSSSYLRDLGIKDGLVELISGIEDLAKEG 225

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
             +   R    +P   S  LI+   D  +   Y  +P+Q  S ++LK+M R
Sbjct: 226 VNIKSARILYLYPATTSKKLIQKIIDSPIFHNYFDMPLQHASQKVLKTMGR 276


>gi|86150486|ref|ZP_01068711.1| MiaB-like tRNA modifying enzyme [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|85839081|gb|EAQ56345.1| MiaB-like tRNA modifying enzyme [Campylobacter jejuni subsp. jejuni
           CF93-6]
          Length = 256

 Score = 97.1 bits (240), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 73/279 (26%), Positives = 138/279 (49%), Gaps = 26/279 (9%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + ++ F K++GC+ N+YD+  ++   + + YE +N  + A +IV+N+C +   A   + S
Sbjct: 1   MKEKVFFKTFGCRTNIYDTELLKS--YVKDYEIINDENKAQIIVVNSCTVTNGADSGIKS 58

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
           ++       N+  K+G  + V++ GC A ++G+E+L +  +  V+ G     ++ E L  
Sbjct: 59  YV-------NTMQKKG--IKVILTGCGAVSKGKELLDKKQVFGVL-GASNKDKINEFLGA 108

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
                 + + ++  +D      IV    N  +   AF+ IQEGCD  C++C++P  RG  
Sbjct: 109 KTSFYELGNLNFIDKD------IVCEYENHTK---AFVKIQEGCDFACSYCIIPSVRGKS 159

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            S     ++ +   L  NG  EI L G N+ ++   GL     T   LL  + +I G+ R
Sbjct: 160 RSVDEKALLKQVEILGANGYSEIVLTGTNIGSY---GLK-NGTTLGKLLQKMGQILGIKR 215

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
           +R  +  P  + +  ++   D   L  +LH+ +Q  S +
Sbjct: 216 IRLGSLEPAQLDESFLEIL-DEAWLERHLHIALQHTSXK 253


>gi|315928738|gb|EFV08014.1| uncharacterized protein family UPF0004 family protein
           [Campylobacter jejuni subsp. jejuni 305]
          Length = 255

 Score = 95.9 bits (237), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 71/274 (25%), Positives = 136/274 (49%), Gaps = 26/274 (9%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + ++ F K++GC+ N+YD+  ++   + + YE +N  + A +IV+N+C +   A   + S
Sbjct: 6   IERKSFFKTFGCRTNIYDTELLKS--YVKDYEIINDENKAQIIVVNSCTVTNGADSGIKS 63

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
           ++       N+  K+G  + V++ GC A ++G+E+L +  +  V+ G     ++ E L  
Sbjct: 64  YV-------NTMQKKG--IKVILTGCGAVSKGKELLDKKQVFGVL-GASNKDKINEFLGA 113

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
                 + + ++  +D      IV    N  +   AF+ IQEGCD  C++C++P  RG  
Sbjct: 114 KTSFYELGNLNFIDKD------IVCEYENHTK---AFVKIQEGCDFACSYCIIPSVRGKS 164

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            S     ++ +   L  NG  EI L G N+ ++   GL     +   LL  + +I G+ R
Sbjct: 165 RSVDEKALLKQVEILGANGYSEIVLTGTNIGSY---GLK-NGTSLGKLLQKMGQISGIKR 220

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQ 296
           +R  +  P  + +  ++   D   L  +LH+ +Q
Sbjct: 221 IRLGSLEPAQIDESFLEIL-DETWLERHLHIALQ 253


>gi|268609252|ref|ZP_06142979.1| 2-methylthioadenine synthetase [Ruminococcus flavefaciens FD-1]
          Length = 169

 Score = 95.9 bits (237), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 48/115 (41%), Positives = 70/115 (60%)

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           MNR++TA EY Q+ +RIR + PD + ++D +VGFP ET +DF  + + V KIG+A+   F
Sbjct: 1   MNRKYTAEEYYQLTERIRKIFPDCSFTTDVMVGFPQETGEDFAESAEFVKKIGFAKVHVF 60

Query: 366 KYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
           +YS R GT    M  QV ENVK ER   +     E +  +  + VG+ + VL E+
Sbjct: 61  RYSRRHGTRADKMDGQVPENVKTERWQKMTAAAGECREKYLASLVGKTVPVLFER 115


>gi|156185984|gb|ABU55310.1| MiaB-like tRNA modifying enzyme [Callosobruchus chinensis]
          Length = 165

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 56/173 (32%), Positives = 91/173 (52%), Gaps = 11/173 (6%)

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           S  ++ ++++ R   +NG  E+   G ++  + G  L  +    S +   L +I  L RL
Sbjct: 3   SVPINSIIEQIRIFAENGYQEVVFTGVDITDF-GTDLFAKPSLGSMIRRVLKDIPELKRL 61

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R ++          I    +   LMP+LHL +QSG++ ILK M RRH   +  +   +++
Sbjct: 62  RLSS----------IDLIANESRLMPHLHLSLQSGNNLILKRMKRRHNREQVIEFCHKMK 111

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
           S+RP+IA  +D I GFP ETD+ F+ T+DL+ K       +F YS R  TP +
Sbjct: 112 SLRPNIAFGADIIAGFPTETDEMFQDTVDLLKKTNIVYLHAFPYSERKNTPAA 164


>gi|322513299|ref|ZP_08066420.1| MiaB family RNA modification enzyme [Actinobacillus ureae ATCC
           25976]
 gi|322120898|gb|EFX92750.1| MiaB family RNA modification enzyme [Actinobacillus ureae ATCC
           25976]
          Length = 254

 Score = 94.0 bits (232), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 73/268 (27%), Positives = 120/268 (44%), Gaps = 40/268 (14%)

Query: 50  SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCV 109
           + GY  + S ++ADL+++NTC   + A ++    +G         ++E G   V+V GC+
Sbjct: 3   TDGYNIIPSYENADLVIVNTCGFIDSAVQESLEAIGE-------ALQENGK--VIVTGCL 53

Query: 110 AQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGG 169
              E + I    P V  + G  +Y     +    ++  R     Y+     + + +    
Sbjct: 54  GAKENQ-IREVHPKVLEITGSHSYEA--AMQHVHKYVPRPERNIYTSLVPAQGVKLTPKH 110

Query: 170 YNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLG 229
           Y       A+L I EGCD  CTFC++P  RG   SR + QV+DEA++L D+GV E+ ++ 
Sbjct: 111 Y-------AYLKISEGCDHRCTFCIIPSMRGDLDSRPIVQVLDEAKRLADSGVKELLIVS 163

Query: 230 QNVNA---------------WRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMS 274
           Q+ +A               W G  +     T  + L +L      VRL Y   +P    
Sbjct: 164 QDTSAYALDQSKENQNKTVFWNGAPIKNNLITLCEQLGTLGI---WVRLHYVYPYPHVDD 220

Query: 275 DCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
              + A G    ++PYL +P+Q  S  I
Sbjct: 221 LIPLMAQGK---ILPYLDIPLQHASPSI 245


>gi|288926974|ref|ZP_06420870.1| 2-methylthioadenine synthetase [Prevotella buccae D17]
 gi|288336257|gb|EFC74642.1| 2-methylthioadenine synthetase [Prevotella buccae D17]
          Length = 275

 Score = 94.0 bits (232), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 75/291 (25%), Positives = 131/291 (45%), Gaps = 35/291 (12%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVN--SMDDADLIVLNTCHIREKAA-EKVYSFLGRI 87
           + GC  N+ DS  +   F + GY  V+  +    ++ V+NTC   E A  E + + L  +
Sbjct: 10  TMGCSKNLVDSEVLMKQFEANGYRCVHDAAHPQGEIAVINTCGFIETAKQESINTILEFV 69

Query: 88  RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF-- 145
           +     R+ +     + V GC++Q   +E+    P V+   G   Y +L   L +A    
Sbjct: 70  QAKTEGRLNK-----LYVMGCLSQRYKDELEAEIPEVDKFYGKFNYKQLLADLGKAELPS 124

Query: 146 --GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             G+R + T                         A+L I EGCD+ C +C +P   G  +
Sbjct: 125 CNGRRHLTTPRHY---------------------AYLKIAEGCDRHCAYCAIPLMTGRHV 163

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR + +++DE R+L+  GV E  ++ Q +  + G  LDG     ++L+  +++I G+  +
Sbjct: 164 SRPMDEILDEVRELVAGGVKEFQVIAQELTYY-GIDLDGHH-HIAELISRMADIPGVKWI 221

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
           R   ++P      L+    +   +  YL + +Q  SD IL  M+R  T  E
Sbjct: 222 RLHYAYPNQFPMDLLDVMRERPNVCRYLDIALQHISDHILSRMHRHVTKQE 272


>gi|270702409|ref|ZP_06223065.1| Fe-S oxidoreductase [Haemophilus influenzae HK1212]
 gi|270315832|gb|EFA27939.1| Fe-S oxidoreductase [Haemophilus influenzae HK1212]
          Length = 144

 Score = 93.6 bits (231), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 50/127 (39%), Positives = 74/127 (58%), Gaps = 3/127 (2%)

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
           VRL Y   +P    D LI    D   L+PYL +P+Q  S +ILK+M R  +     + I 
Sbjct: 21  VRLHYVYPYPH--VDDLIPLMAD-GTLLPYLDIPLQHASPKILKAMKRPGSIDRTLERIK 77

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           + R + PD+ + S FIVGFPGET++DF+  +D + +    +   FK+SP  G P ++M +
Sbjct: 78  QWREICPDLTLRSTFIVGFPGETEEDFQLLLDFLKEAQLDRVGCFKFSPVEGAPATDMAD 137

Query: 381 QVDENVK 387
           QV E+VK
Sbjct: 138 QVPEDVK 144


>gi|28804570|dbj|BAC57983.1| hypothetical protein [Leptospira interrogans]
          Length = 264

 Score = 93.2 bits (230), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 67/267 (25%), Positives = 124/267 (46%), Gaps = 12/267 (4%)

Query: 42  LRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDL 101
           + M      +G+   +  +++D   +NTC   + A E+    +     L  +++K+    
Sbjct: 1   MSMHHSLLEEGFTPASLPEESDFHFINTCTFIQSATEETIQTI-----LSAAQVKKQNHQ 55

Query: 102 LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFE 161
            +VV GC A+   + I    P V++  G   Y +  ++L R +F +         +   E
Sbjct: 56  KLVVVGCFAERYPDNIHSEIPEVDLFFGTGKYSQAGKIL-REKFPELSPSQLEFNDSLLE 114

Query: 162 RLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNG 221
           R  +     N  +   A++ + +GC++ C+FC++P  RG  +   L  ++ +  + I  G
Sbjct: 115 RWKLSSKIENYSKPY-AYVKVSDGCNRGCSFCIIPSFRGKFVESPLDDILRDTNRAIRAG 173

Query: 222 VCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAH 281
             EI L+ Q+   +   G D E     D++  ++EI  L  LR    +P   ++ LI+  
Sbjct: 174 AKEICLVSQDTVYY---GRDSE--ILLDMVRKVAEIDSLEILRLLYLYPDKKTEKLIRLM 228

Query: 282 GDLDVLMPYLHLPVQSGSDRILKSMNR 308
           G+   + PYL  P+Q  S +ILK MNR
Sbjct: 229 GETSKIAPYLESPLQHVSSKILKVMNR 255


>gi|147677218|ref|YP_001211433.1| hypothetical protein PTH_0883 [Pelotomaculum thermopropionicum SI]
 gi|146273315|dbj|BAF59064.1| hypothetical protein [Pelotomaculum thermopropionicum SI]
          Length = 165

 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 54/168 (32%), Positives = 94/168 (55%), Gaps = 7/168 (4%)

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           M RR+TA+EY ++ + +R   P + +++D +VGFPGET ++F  T   ++K+ +++   F
Sbjct: 1   MGRRYTAWEYYRLAEVLRENLPGLGLTTDVMVGFPGETGENFANTCRFIEKVSFSRLHVF 60

Query: 366 KYSPRLGTPGSNMLEQVDENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422
           K+SPR GTP +   +QV+  VK ER   LL L +KL      F    +G  ++VL E+  
Sbjct: 61  KFSPRRGTPAAGFGDQVEPPVKEERSRALLELGEKL---SARFASLHIGLELDVLAEQPF 117

Query: 423 KEKGKLV-GRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
           +E+  L  G +     VV    +   G I++V+   ++   L G +++
Sbjct: 118 QERSGLYEGLTGNYLRVVFPGNDELKGKIVRVKAEKLRDGLLEGSIII 165


>gi|330878023|gb|EGH12172.1| ribosomal protein S12 methylthiotransferase [Pseudomonas syringae
           pv. glycinea str. race 4]
          Length = 215

 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 68/217 (31%), Positives = 108/217 (49%), Gaps = 29/217 (13%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  FV S GC   + DS R+      +GYE V + +DAD++V+NTC   + A  +    
Sbjct: 10  PKVGFV-SLGCPKALVDSERILTQLRMEGYEVVATYEDADVVVVNTCGFIDTAKAESLEV 68

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G         IKE G   V+V GC+   +   I    P V  V GPQ Y          
Sbjct: 69  IGE-------AIKENGK--VIVTGCMG-VDANVIRDVHPSVLSVTGPQQY---------- 108

Query: 144 RFGKRVVDTDYSV----EDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
              ++VV+  + V    +D    + +V   G        A+L I EGC+  C+FC++P  
Sbjct: 109 ---EQVVNAVHDVVPPRKDHNPLIDLVPPQGVKLTPRHYAYLKISEGCNHSCSFCIIPSM 165

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW 235
           RG  +SR +  V+DEA++L+ +GV E+ ++ Q+ +A+
Sbjct: 166 RGKLVSRPVGDVLDEAKRLVKSGVKELLVISQDTSAY 202


>gi|237833257|ref|XP_002365926.1| radical SAM domain-containing protein [Toxoplasma gondii ME49]
 gi|211963590|gb|EEA98785.1| radical SAM domain-containing protein [Toxoplasma gondii ME49]
 gi|221508888|gb|EEE34457.1| Radical SAM domain-containing protein, putative [Toxoplasma gondii
           VEG]
          Length = 867

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 66/237 (27%), Positives = 116/237 (48%), Gaps = 18/237 (7%)

Query: 162 RLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNG 221
           RL  +D    R+  +   + I  GC   CT+C   + RG   S     +       ++ G
Sbjct: 549 RLPSLDLPKIRRNNLVEIVPISTGCLGSCTYCKTKHARGDLGSYPEEAIEKRVEASLEEG 608

Query: 222 VCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL------SEIKGLVRLRYTTSHPRDM-- 273
           V +I L  ++  A+   GLD  + + + LL  L       +    + LR   S+P  +  
Sbjct: 609 VKQIWLTSEDSGAY---GLD-RQSSLTGLLARLLRNVFDRKADSSLMLRVGMSNPPFLLQ 664

Query: 274 ---SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330
              S   + +H ++     +LHLP+QSGS+ +L +MNR +TA ++  +++ +    P + 
Sbjct: 665 QLKSAVQVFSHPNV---FEFLHLPLQSGSNDVLLAMNREYTAEQFEVVVETLLKHFPRMT 721

Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
           I++D I GFPGETD+D   T+ ++ K  +      ++ PR GTP ++M +   + VK
Sbjct: 722 IATDIICGFPGETDEDHERTLAIIRKFKFPVVNISQFYPRPGTPAASMKQLPSQVVK 778



 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 37/60 (61%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           QR FVK++GC  N  DS  M  +  + GY  V+ M+DAD+ ++N+C ++  +   +YS +
Sbjct: 279 QRIFVKTFGCAHNQSDSEYMMGLLDAAGYTFVSRMEDADVCLINSCTVKSPSEFALYSVI 338


>gi|221488386|gb|EEE26600.1| Radical SAM domain-containing protein, putative [Toxoplasma gondii
           GT1]
          Length = 867

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 66/237 (27%), Positives = 116/237 (48%), Gaps = 18/237 (7%)

Query: 162 RLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNG 221
           RL  +D    R+  +   + I  GC   CT+C   + RG   S     +       ++ G
Sbjct: 549 RLPSLDLPKIRRNNLVEIVPISTGCLGSCTYCKTKHARGDLGSYPEEAIEKRVEASLEEG 608

Query: 222 VCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL------SEIKGLVRLRYTTSHPRDM-- 273
           V +I L  ++  A+   GLD  + + + LL  L       +    + LR   S+P  +  
Sbjct: 609 VKQIWLTSEDSGAY---GLD-RQSSLTGLLARLLRNVFDRKADSSLMLRVGMSNPPFLLQ 664

Query: 274 ---SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330
              S   + +H ++     +LHLP+QSGS+ +L +MNR +TA ++  +++ +    P + 
Sbjct: 665 QLKSAVQVFSHPNV---FEFLHLPLQSGSNDVLLAMNREYTAEQFEVVVETLLKHFPRMT 721

Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
           I++D I GFPGETD+D   T+ ++ K  +      ++ PR GTP ++M +   + VK
Sbjct: 722 IATDIICGFPGETDEDHERTLAIIRKFKFPVVNISQFYPRPGTPAASMKQLPSQVVK 778



 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 37/60 (61%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           QR FVK++GC  N  DS  M  +  + GY  V+ M+DAD+ ++N+C ++  +   +YS +
Sbjct: 279 QRIFVKTFGCAHNQSDSEYMMGLLDAAGYTFVSRMEDADVCLINSCTVKSPSEFALYSVI 338


>gi|213616143|ref|ZP_03371969.1| MiaB protein (putative tRNA-thiotransferase (or
           tRNA-methylthiotransferase)) [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
 gi|289805050|ref|ZP_06535679.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella
           enterica subsp. enterica serovar Typhi str. AG3]
          Length = 97

 Score = 91.3 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 45/98 (45%), Positives = 67/98 (68%), Gaps = 5/98 (5%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  +K++GCQMN YDS +M D+   + GY+  +  ++AD+++LNTC IREKA EKV+  
Sbjct: 3   KKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTDVAEEADVLLLNTCSIREKAQEKVFHQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRS 121
           LGR R LK    ++  DL++ V GCVA  EGE I +R+
Sbjct: 63  LGRWRLLK----EKNPDLIIGVGGCVASQEGEHIRQRA 96


>gi|294631788|ref|ZP_06710348.1| MiaB family RNA modification enzyme [Streptomyces sp. e14]
 gi|292835121|gb|EFF93470.1| MiaB family RNA modification enzyme [Streptomyces sp. e14]
          Length = 491

 Score = 90.5 bits (223), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 63/212 (29%), Positives = 101/212 (47%), Gaps = 2/212 (0%)

Query: 217 LIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDC 276
           L + GV EI L+ +N N   GK L G+      LL  L+E+ G+ R+R +   P +M   
Sbjct: 225 LAEQGVKEIMLVSEN-NTSYGKDL-GDIRLLESLLPELAEVDGIERVRVSYLQPAEMRPG 282

Query: 277 LIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFI 336
           LI        + PY  L  Q  +  +L++M R      + +++D IRS  P   + S+FI
Sbjct: 283 LIDVLTSTPKVAPYFDLSFQHSAPGVLRAMRRFGDTDRFLELLDTIRSKAPQAGVRSNFI 342

Query: 337 VGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQK 396
           VGFPGE++ D       ++         F YS   GT  +    ++D++V  ERL  + +
Sbjct: 343 VGFPGESEADLAELERFLNGARLDAIGVFGYSDEEGTEAATYENKLDQDVVDERLAHISR 402

Query: 397 KLREQQVSFNDACVGQIIEVLIEKHGKEKGKL 428
              E      +  +G+ + VL+E    E+G L
Sbjct: 403 LAEELVSQRAEERLGETVRVLVESVDAEEGAL 434



 Score = 37.4 bits (85), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 35/121 (28%), Positives = 56/121 (46%), Gaps = 6/121 (4%)

Query: 23  VPQRFFVK--SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKV 80
           +P+R  V   + GC  N  DS  +     + G++ V    DAD+ V+NTC   E A +  
Sbjct: 1   MPERRTVALVTLGCARNEVDSEELAGRLEADGWQLVEDAADADVAVVNTCGFVEAAKKDS 60

Query: 81  YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140
              L    +LK+     G    VV  GC+A+  G+E+    P  + V+G   Y  + + L
Sbjct: 61  VDALLEANDLKD----HGRTQAVVAVGCMAERYGKELAEALPEADGVLGFDDYADISDRL 116

Query: 141 E 141
           +
Sbjct: 117 Q 117


>gi|325118100|emb|CBZ53651.1| putative radical SAM domain-containing protein [Neospora caninum
           Liverpool]
          Length = 863

 Score = 90.1 bits (222), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 66/238 (27%), Positives = 116/238 (48%), Gaps = 18/238 (7%)

Query: 161 ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN 220
           +RL  +D    R+  +   + I  GC   CT+C   + RG   S     +       + +
Sbjct: 544 KRLPSLDLPKIRRNALVEIVPISTGCLGSCTYCKTKHARGELGSYPEEAIETRIEASLLD 603

Query: 221 GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL------SEIKGLVRLRYTTSHPRDM- 273
           GV +I L  ++  A+   GLD  + + + LL  L            + LR   S+P  + 
Sbjct: 604 GVKQIWLTSEDSGAY---GLD-RQSSLTSLLARLLRNVFDRRADPSLMLRVGMSNPPFLL 659

Query: 274 ----SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329
               S   + AH ++     +LHLP+QSGS+ +L +MNR +TA ++  +++ +    P +
Sbjct: 660 QQLKSAVQVFAHPNV---FEFLHLPLQSGSNDVLLAMNREYTAEQFEVVVETLLKHFPRM 716

Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
            I++D I GFPGET++D   T+ ++ K  +      ++ PR GTP ++M +   + VK
Sbjct: 717 TIATDIICGFPGETEEDHEKTLAIIKKFKFPVVNISQFYPRPGTPAASMKQLPSQIVK 774



 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 37/60 (61%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           Q+ +VK++GC  N  DS  M  +  + GY  V+ M++AD+ ++N+C ++  +   +YS +
Sbjct: 272 QKIYVKTFGCAHNQSDSEYMMGLLDAAGYTFVSRMEEADVCLINSCTVKSPSEFALYSVI 331


>gi|253742055|gb|EES98909.1| tRNA 2-methylthioadenosine synthase [Giardia intestinalis ATCC
           50581]
          Length = 525

 Score = 90.1 bits (222), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 83/280 (29%), Positives = 129/280 (46%), Gaps = 36/280 (12%)

Query: 171 NRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARK-LIDNGVCEITLLG 229
           +R   +   +    GC   CT+C   ++RG   S  L  ++   R  L D  + E+ L G
Sbjct: 202 HRANPIIDIIATGSGCMGSCTYCKTCHSRGRLRSVPLDTLLARIRSSLADPVIRELWLTG 261

Query: 230 QNVNAW-RGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM----SDCLIKAHGDL 284
           ++  AW R  G      TF+ LL    EI+ L+     T     +     D +I     L
Sbjct: 262 EDTLAWGRDSG-----TTFAALL---QEIQKLLETENPTHKMLKIGMTDPDSVINQEDSL 313

Query: 285 DVLM------PYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVG 338
              M       +LHLPVQSGSDRIL  M R +    +     +++S  PD+ + +D I G
Sbjct: 314 ISFMQCKYVYKFLHLPVQSGSDRILTLMRRHYDIGTFLASCSKLQSAIPDLCLDTDIICG 373

Query: 339 FPGETDDDFRATMDLVDKIGY-AQAFSF----KYSPRLGTPGSNMLEQVDENVKAERLLC 393
           FPGETD+D   +++L   +   A  F      +Y  R  TP ++M EQV  + K ER   
Sbjct: 374 FPGETDEDHAQSLNLFRNLSKDAPRFQVVNITQYYARKNTPAASM-EQVPASKKRERTRE 432

Query: 394 LQKKLREQQVSF-NDACVGQIIEVLI------EKHGKEKG 426
           + + ++    SF  D   GQ+ ++++      E HG++ G
Sbjct: 433 MSEVVKG---SFRRDQYHGQVHDIMVLEKLQTEGHGRKYG 469


>gi|256079507|ref|XP_002576028.1| radical sam proteins [Schistosoma mansoni]
 gi|238661286|emb|CAZ32263.1| radical sam proteins, putative [Schistosoma mansoni]
          Length = 184

 Score = 89.7 bits (221), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 47/130 (36%), Positives = 78/130 (60%), Gaps = 1/130 (0%)

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
           +HLP QSGS  +L++M R +T   Y ++++ I  + P+++++SDFI GF GET++D   +
Sbjct: 52  IHLPAQSGSSVVLENMRRGYTRQAYMELVNTIHEIVPNVSLTSDFIAGFCGETEEDHSQS 111

Query: 351 MDLVDKIGYAQAFSFKYSPRLGTPGSNML-EQVDENVKAERLLCLQKKLREQQVSFNDAC 409
           ++L++++GY+  F F YS R  T   + L + V   VK  R   L    R + + FN   
Sbjct: 112 LELIERVGYSFCFCFPYSMREKTFAYHHLTDDVPIEVKKRRHDELAMISRNKSLEFNQKQ 171

Query: 410 VGQIIEVLIE 419
           +G I  VL+E
Sbjct: 172 IGTIQIVLVE 181


>gi|270676233|ref|ZP_06222691.1| Fe-S oxidoreductase [Haemophilus influenzae HK1212]
 gi|270316429|gb|EFA28315.1| Fe-S oxidoreductase [Haemophilus influenzae HK1212]
          Length = 189

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 67/207 (32%), Positives = 104/207 (50%), Gaps = 32/207 (15%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P   FV S GC  N+ DS R+     + GY  V S ++ DL+++NTC   + A ++    
Sbjct: 9   PSIGFV-SLGCPKNLVDSERILTELRTDGYNIVPSYENVDLVIVNTCGFIDSAVQESLES 67

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G         ++E G   V+V GC+   E ++I    P V  V GP +Y  +  + +  
Sbjct: 68  IGE-------ALEENGR--VIVTGCLGAKE-DQIREVHPKVLEVSGPHSYEAV--MAQVH 115

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT------AFLTIQEGCDKFCTFCVVPY 197
           ++  +     Y        +S+V      K+GV       A+L I EGCD  CTFC++P 
Sbjct: 116 KYVPKPTHNPY--------ISLVP-----KQGVKLTPKHYAYLKISEGCDHRCTFCIIPS 162

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCE 224
            RG   SRS++QV+DEA++L + GV E
Sbjct: 163 MRGDLESRSITQVLDEAKRLAEAGVKE 189


>gi|256069402|ref|XP_002571132.1| radical sam proteins [Schistosoma mansoni]
 gi|238652163|emb|CAZ38817.1| radical sam proteins, putative [Schistosoma mansoni]
          Length = 206

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 59/211 (27%), Positives = 97/211 (45%), Gaps = 33/211 (15%)

Query: 36  MNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRI 95
           MN  D+     +    GY  V S +  D ++L TC IR+ A  K++  +  +R+L    +
Sbjct: 1   MNRSDANIAHSLLTKAGYTIVPSDEQCDTVLLMTCAIRDSAEVKIWRRIQHLRSLHRKYV 60

Query: 96  KEGGDLLVVVAGCVAQAEGEEILRRSPI---------------------VNVVVGPQTYY 134
           K G      V GC+A+   +++L  +                        + V GP +Y 
Sbjct: 61  KIG------VLGCMAKRLKDKLLMDNSCKTSKAGDLQSSSFGHNSFNVAADFVCGPDSYR 114

Query: 135 RLPELLERARFGKRVVDTDYSVEDKFERLSIV------DGGYNRKRGVTAFLTIQEGCDK 188
            LP+L+E A  G +      S+E+ +  ++ V      D   +     TAFL++  GCD 
Sbjct: 115 DLPKLIEDAHSGLKGASVALSLEETYADVTPVRRHFTTDESSDPVLSPTAFLSVMRGCDN 174

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLID 219
            CT+C+VP+ RG E SR L  ++ EA+ L +
Sbjct: 175 MCTYCIVPFVRGRERSRPLDSILHEAQSLFN 205


>gi|162708468|gb|ABY19632.1| hypothetical protein [Pseudomonas syringae pv. apii]
 gi|162708470|gb|ABY19633.1| hypothetical protein [Pseudomonas syringae pv. tomato]
 gi|162708472|gb|ABY19634.1| hypothetical protein [Pseudomonas syringae pv. tomato str. JL1065]
 gi|162708474|gb|ABY19635.1| hypothetical protein [Pseudomonas syringae pv. tomato]
 gi|162708476|gb|ABY19636.1| hypothetical protein [Pseudomonas syringae pv. antirrhini str. 126]
          Length = 239

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 109/227 (48%), Gaps = 32/227 (14%)

Query: 95  IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDY 154
           IKE G   V+V GC+   +   I    P V  V GPQ Y             ++VV+  +
Sbjct: 20  IKENGK--VIVTGCMG-VDASVIRAVHPSVLSVTGPQQY-------------EQVVNAVH 63

Query: 155 SV----EDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209
            V    +D    + +V   G        A+L I EGC+  C+FC++P  RG  +SR +  
Sbjct: 64  DVVPPRKDHNPLIDLVPPQGVKLTPRHYAYLKISEGCNHSCSFCIIPSMRGKLVSRPVGD 123

Query: 210 VVDEARKLIDNGVCEITLLGQNVNA------WRGKGLDGE--KCTFSDLLYSLSEIKGLV 261
           V+DEA++L+ +GV E+ ++ Q+ +A      +R    DG+  K   ++L  +L  +   V
Sbjct: 124 VLDEAKRLVKSGVKELLVISQDTSAYGVDVKYRTGFWDGQPVKTRMTELCQALGSMGVWV 183

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
           RL Y   +P       + A G    ++PYL +P Q  S +ILK M R
Sbjct: 184 RLHYVYPYPHVDELIPLMAAGK---ILPYLDIPFQHASPKILKLMKR 227


>gi|126178341|ref|YP_001046306.1| radical SAM domain-containing protein [Methanoculleus marisnigri
           JR1]
 gi|125861135|gb|ABN56324.1| Radical SAM domain protein [Methanoculleus marisnigri JR1]
          Length = 435

 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 61/215 (28%), Positives = 104/215 (48%), Gaps = 9/215 (4%)

Query: 167 DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDNGVCEI 225
           D G    RG +A++    GC   CTFC VP   G  I SR L ++V+E +    +G   +
Sbjct: 147 DIGNQSVRGASAYIETHRGCIGGCTFCQVPRFFGRAIRSRPLDRIVEEVKAFSAHGATRL 206

Query: 226 TLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLI-KAHGDL 284
           ++ G   + +   G +     F  LL S++E+ G        S P    DC+  +  G +
Sbjct: 207 SVSGGTGSLYGSTGGEMNPEAFIGLLRSMAEVMG----PKNVSSPDIRVDCISDEILGAV 262

Query: 285 -DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGET 343
               + ++   ++SGSDR+L+ M +  T  +  + ++R R     + ++  FIVG+PGET
Sbjct: 263 RQYTIGWVFFGIESGSDRVLRLMGKGATVRQVEEAVERCREH--GLRVAGSFIVGYPGET 320

Query: 344 DDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           + D+ AT DL+  +     F     P   TP +++
Sbjct: 321 ERDYEATKDLIAALSLDDVFVSSAEPIPATPLADL 355


>gi|156326520|ref|XP_001618638.1| hypothetical protein NEMVEDRAFT_v1g224945 [Nematostella vectensis]
 gi|156199651|gb|EDO26538.1| predicted protein [Nematostella vectensis]
          Length = 214

 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 57/205 (27%), Positives = 101/205 (49%), Gaps = 12/205 (5%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N  ++  +   F  +G+ERV+  + AD+ V+NTC + E A ++    + +   L
Sbjct: 11  TLGCKLNFSETSTIARNFQDEGFERVDFEEVADMYVINTCSVTENADKQFKQIVKKAMKL 70

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
            +          V   GC AQ + EE L     V++V+G    +++ + +      K  +
Sbjct: 71  NDK-------AFVAAVGCYAQLKPEE-LAAVDGVDLVLGATEKFKITDYIND--LAKNDM 120

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
              +S E   E      G Y+      AFL +Q+GCD  CT+C +P  RGI  S ++  V
Sbjct: 121 GEVHSCE--IEDADFYVGSYSIGDRTRAFLKVQDGCDYKCTYCTIPLARGISRSDTMEGV 178

Query: 211 VDEARKLIDNGVCEITLLGQNVNAW 235
           +  A+++ + G+ EI L G N+  +
Sbjct: 179 LKNAKEISEKGIKEIVLTGVNIGDY 203


>gi|312137014|ref|YP_004004351.1| radical sam domain protein [Methanothermus fervidus DSM 2088]
 gi|311224733|gb|ADP77589.1| Radical SAM domain protein [Methanothermus fervidus DSM 2088]
          Length = 429

 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 65/211 (30%), Positives = 101/211 (47%), Gaps = 22/211 (10%)

Query: 174 RGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDNGVCEITLLGQNV 232
           RG   ++    GC   C FC VP   G E+ SR L+++V+E ++ +  G   I + G   
Sbjct: 152 RGANVYIETHRGCPGNCGFCQVPKFFGREVRSRKLNEIVNEVKEFVKMGARRIAISGGTG 211

Query: 233 NAWRGKGL-DGEKCTFSDLLYSLSEIKG-----LVRLRYTTSHPRDMSDCLIKAHGDLDV 286
             +  K   +  +  F +LL +LS+I G     +  +R  T  P  M       +G    
Sbjct: 212 TLYGCKKFKEINEEAFIELLKNLSKITGKENLTIPDIRVDTVSPEIMEAISKYTNG---- 267

Query: 287 LMPYLHLPVQSGSDRILKSMNRR---HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGET 343
              ++   ++SGS++ILK MN+     T YE  ++  R   V+    ++  FIVG+PGET
Sbjct: 268 ---WVFYGIESGSEKILKKMNKGIKIETVYEAVELA-REHGVK----VAGSFIVGYPGET 319

Query: 344 DDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
           +DDF AT+ L D +     F     P  GTP
Sbjct: 320 EDDFEATLSLADDLMLDDYFVSIAEPIPGTP 350


>gi|32480090|emb|CAE01708.1| OSJNBb0086G13.6 [Oryza sativa Japonica Group]
          Length = 558

 Score = 87.4 bits (215), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 103/437 (23%), Positives = 176/437 (40%), Gaps = 91/437 (20%)

Query: 40  DSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGG 99
           DS  M     + GY      + ADL ++NTC ++  +   + + + + ++          
Sbjct: 60  DSEYMSGQLSAFGYAITEEPEGADLWLINTCTVKNPSQSAMTTLISKCKSANKP------ 113

Query: 100 DLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDK 159
              +VVAGCV Q  G   L+    ++V+ G Q   R+ E++E    G  V          
Sbjct: 114 ---LVVAGCVPQ--GSRDLKELEGISVI-GVQQIDRVVEVVEETLKGHEVRLLSRKT--- 164

Query: 160 FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLID 219
              L  +D    RK      L I  GC   CT+C   + RG   S ++  +VD  + ++ 
Sbjct: 165 ---LPSLDLPKVRKNKFIEILPINVGCLGACTYCKTKHARGHLGSYTIESLVDRVKIVVS 221

Query: 220 NGVCEITLLGQNVNAWRGKGLDGEKCTFS---DLLYSLSEIKGLVRLRYTTSHPRDMSDC 276
            GV EI L  ++  A+           F+   DL ++ +  + + R  YT S  R + D 
Sbjct: 222 EGVREIWLSSEDTGAY----------VFAPGPDLFHNYTS-QAMNR-EYTVSEFRRVVDT 269

Query: 277 LIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFI 336
           L +       L+P +                                       I++D I
Sbjct: 270 LCE-------LVPGMQ--------------------------------------IATDII 284

Query: 337 VGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQK 396
            GFPGETD+DF  T++LV +  + Q    ++ PR GTP + M +     VK        K
Sbjct: 285 CGFPGETDEDFSQTVNLVKQYLFPQVHISQFYPRPGTPAARMKKVPSVEVK--------K 336

Query: 397 KLRE-----QQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDII 451
           + RE     +  S      G++  + I +   +   LVG +     V++ + +  +G   
Sbjct: 337 RSRELTSVFESFSPYQGMEGKVERIWITEIATDGVHLVGHTKGYIQVLVIAPDSMLGTSA 396

Query: 452 KVRITDVKISTLYGELV 468
            V+IT V   +++GE++
Sbjct: 397 DVKITSVGRWSVFGEVI 413


>gi|326200994|ref|ZP_08190866.1| Radical SAM domain protein [Clostridium papyrosolvens DSM 2782]
 gi|325988562|gb|EGD49386.1| Radical SAM domain protein [Clostridium papyrosolvens DSM 2782]
          Length = 404

 Score = 87.4 bits (215), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 89/378 (23%), Positives = 165/378 (43%), Gaps = 46/378 (12%)

Query: 43  RMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRN-LKNSRIKEGGDL 101
           R+E  F   G++ V ++D ADL V+  C     A + V+    R++N L +  +K+G   
Sbjct: 22  RLEKYFILNGWQSVKNLD-ADLYVIVAC----GAVDFVHD---RVKNALNDISLKKGNFN 73

Query: 102 LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFE 161
             V+ GC      + +     + ++  G    Y    +L+       ++  +Y+    FE
Sbjct: 74  STVIMGC------QPVTYEGKLKSIFDGKMINYGQESMLDE------LIGAEYT----FE 117

Query: 162 RLSI---VDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLI 218
            +SI    +   NRK  +   + I  GC   CT+CV+    G   S+ + ++ +E +  +
Sbjct: 118 SVSIPNIFNSPVNRKNELFTII-ISTGCMMKCTYCVIKKAHGYITSKPVDEICEEFKHAV 176

Query: 219 DNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLI 278
             G   I + G + + + G  ++     F  L+  L  I   V+      HP +    L+
Sbjct: 177 RLGYKNIAIGGTDTSVY-GHDINT---NFIALIKKLRAIDSTVKFYVDNLHPHN----LL 228

Query: 279 KAHGDLDVL-----MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
           K   D   L       YLH+  Q   D +L  M R     +   +I  ++ V P + + +
Sbjct: 229 KYRDDFIELAGQNAFSYLHIAFQHIDDVMLDRMGRTAHFEQVYAMIGEMKKVCPKLILFT 288

Query: 334 DFIVGFPGETDDDFRATMDLVDK-IGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER-- 390
           DFI  FPGET++ +   +D V K   +   +   Y    G    N  +++ ++VK ER  
Sbjct: 289 DFICAFPGETEEQYEKLLDFVKKDTIFDYYYIHDYCDIDGAVSYNYTDKISDDVKTERCQ 348

Query: 391 -LLCLQKKLREQQVSFND 407
            L+   ++ +++++S  D
Sbjct: 349 KLMIAFERRKDEKISLLD 366


>gi|302809011|ref|XP_002986199.1| hypothetical protein SELMODRAFT_446559 [Selaginella moellendorffii]
 gi|300146058|gb|EFJ12730.1| hypothetical protein SELMODRAFT_446559 [Selaginella moellendorffii]
          Length = 686

 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 59/207 (28%), Positives = 97/207 (46%), Gaps = 23/207 (11%)

Query: 172 RKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQN 231
           RK      + I  GC   CT+C   + RG   S ++   V   + ++  G      +G N
Sbjct: 91  RKNKFVEIIPINVGCLGACTYCKTKHARGHLGSYTVDTPVQRLKTVVSEG----RDIGAN 146

Query: 232 VNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL 291
           + A               LL +L  +    R +Y      ++       +G    +  +L
Sbjct: 147 IPA---------------LLRALVAVLPH-RQKYNAP---NLHLTASGGNGCHPCVYSFL 187

Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351
           H+ VQSG D +L+ M R +T  E+R+I+D +  + P+I I++D I GFPGET +DF   M
Sbjct: 188 HVLVQSGRDSVLEGMKREYTFSEFRKIVDTLTRLVPEIHIATDIICGFPGETSEDFDRIM 247

Query: 352 DLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           +L+ +  + Q    ++ PR GTP + M
Sbjct: 248 ELIRECTFPQVHISQFYPRPGTPAALM 274


>gi|213026174|ref|ZP_03340621.1| isopentenyl-adenosine A37 tRNA methylthiolase [Salmonella enterica
           subsp. enterica serovar Typhi str. 404ty]
          Length = 74

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 38/73 (52%), Positives = 52/73 (71%)

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
           II ++R+ RPDI ISSDFIVGFPGET DDF  TM L+  + +  ++SF +S R GTP ++
Sbjct: 2   IIRKLRAARPDIQISSDFIVGFPGETTDDFEKTMKLIADVNFDMSYSFIFSARPGTPAAD 61

Query: 378 MLEQVDENVKAER 390
           M++ V E  K +R
Sbjct: 62  MVDDVPEEEKKQR 74


>gi|20094234|ref|NP_614081.1| Fe-S oxidoreductase [Methanopyrus kandleri AV19]
 gi|19887265|gb|AAM02011.1| Predicted Fe-S oxidoreductase [Methanopyrus kandleri AV19]
          Length = 435

 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 85/305 (27%), Positives = 137/305 (44%), Gaps = 36/305 (11%)

Query: 103 VVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA---------------RFGK 147
           V+V G V+Q   E +L R P   V  G +    LP LL+                 R G+
Sbjct: 75  VIVGGPVSQVP-ELVLERFPNAIVAKG-EAETGLPPLLQTLEDEGDFEDVEGIALLRDGE 132

Query: 148 RVVDTDYSVEDKFERLSIV----DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            +VDT +      +  S +    D G    RG   ++    GC   CTFC VP   G  +
Sbjct: 133 -IVDTGWPPPADLDGPSPLKVPRDLGRQDVRGANVYIETHRGCPGACTFCQVPEFFGRRV 191

Query: 204 S-RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
             + +  V++E R+L   G     + G  V  +   G D E   F +LL  L+++ G   
Sbjct: 192 RWKPVEAVLEEVRELTRGGARRFAISGGTVTTY---GDDEED--FVELLKRLADLLG--- 243

Query: 263 LRYTTSHPRDMSDCLIK--AHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R   S P   +D L +       D  + ++ L ++SGSDRIL++M +  T  +  + ++
Sbjct: 244 -RENVSAPDVRADLLNERLLEAIRDYTIGWIFLGIESGSDRILRAMRKGITVDDVCEAVE 302

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
             R+V   + ++  FIVG+PGET+DD  AT +L+ ++     F     P  GT    ++ 
Sbjct: 303 LARTV--GVRVAGSFIVGYPGETEDDLEATEELLTELNLDDVFINLAEPIPGTELGRLVT 360

Query: 381 QVDEN 385
           ++ E 
Sbjct: 361 ELPEE 365


>gi|70939009|ref|XP_740104.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56517584|emb|CAH81443.1| conserved hypothetical protein [Plasmodium chabaudi chabaudi]
          Length = 284

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 55/210 (26%), Positives = 105/210 (50%), Gaps = 18/210 (8%)

Query: 190 CTFCVVPYTRGIEISRSLSQVVDEARKL-IDNGVCEITLLGQNVNAWRGKGLDGEKCTFS 248
           CT+C   + RG   S ++  +V   + +   + + EI L  ++  A+   G+D      +
Sbjct: 3   CTYCNTKFARGNLSSYNIKDIVSRIKHVYTQDNIKEIWLTSEDSGAY---GIDLNTNIVN 59

Query: 249 DLLYSLSEIK--------GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300
            L   L  ++        G+    Y   H +D+  C +  H ++     ++H+PVQSGS+
Sbjct: 60  LLKEILDYVQDTDIMIRIGMTNPPYILKHVKDI--CKLLKHKNM---YEFIHIPVQSGSN 114

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
            +LK MNR +   ++  ++D +R   P++ I++D I GFP E+++D   T++LV    + 
Sbjct: 115 NVLKDMNREYKIEDFIYLVDNLRKYVPNMTIATDIICGFPYESENDHLETVNLVKTYKFP 174

Query: 361 QAFSFKYSPRLGTPGSNMLEQVDENVKAER 390
                ++ PR GT   NM +++D  +  +R
Sbjct: 175 ILNISQFYPRRGTVAYNM-KKIDTKIVKKR 203


>gi|330506954|ref|YP_004383382.1| radical SAM domain-containing protein [Methanosaeta concilii GP-6]
 gi|328927762|gb|AEB67564.1| radical SAM domain protein [Methanosaeta concilii GP-6]
          Length = 430

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 66/225 (29%), Positives = 110/225 (48%), Gaps = 10/225 (4%)

Query: 167 DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDNGVCEI 225
           D G    RG   ++    GC   CTFC VP   G  I SRS+  +VDE +++   GV  +
Sbjct: 140 DLGQQNVRGANVYIETHRGCLGSCTFCQVPRFFGRSIRSRSIENIVDEVKEMKRLGVKRV 199

Query: 226 TLLGQ--NVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGD 283
            + G   ++  +R K     +  F +++ SLS+I G   L         + + +++A  D
Sbjct: 200 AISGGTGSLFGYRNKI---NREAFVEMIRSLSQILGKRNLSVPDMRVDLVDETVLEAVRD 256

Query: 284 LDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGET 343
             +   +  L  +SGSDRIL++M +  T  +  + ++  +S+   + +   FIVG+PGET
Sbjct: 257 YTIGWVFFGL--ESGSDRILRAMRKGVTVEDNLRAVELAKSL--GVKVGGSFIVGYPGET 312

Query: 344 DDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
            +DF  TM  V++      F     P  GTP S  +  + ++V A
Sbjct: 313 REDFEETMSFVEESMLDDVFVSIAEPIPGTPLSAQVLDMPKDVLA 357


>gi|195388802|ref|XP_002053067.1| GJ17100 [Drosophila virilis]
 gi|194151153|gb|EDW66587.1| GJ17100 [Drosophila virilis]
          Length = 283

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 43/137 (31%), Positives = 77/137 (56%), Gaps = 1/137 (0%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +R   + YGCQMN  D+  +  +    GY+R     +AD+++L TC +R+ A +K+++ L
Sbjct: 101 RRVHFEVYGCQMNTNDTEVVWSILQKHGYQRCEDAANADVVMLVTCAVRDGAEQKIWNRL 160

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             +R LK  R  +   L + + GC+A+   E +L +   V+V+ GP +Y  LP LL  AR
Sbjct: 161 RHLRALKERRGTKRQPLQLTILGCMAERLKERLLEQEQCVDVIAGPDSYKDLPRLLAVAR 220

Query: 145 -FGKRVVDTDYSVEDKF 160
            +G   ++   S+++ +
Sbjct: 221 HYGNSAINVLLSLDETY 237


>gi|207092699|ref|ZP_03240486.1| hypothetical protein HpylHP_07546 [Helicobacter pylori
           HPKX_438_AG0C1]
          Length = 322

 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 68/268 (25%), Positives = 126/268 (47%), Gaps = 10/268 (3%)

Query: 157 EDKFERLSIVDGGYNRK----RGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVD 212
           +++F     +   YN +      V A++ I EGC++ C+FC +P  +G   SR L  ++ 
Sbjct: 1   QNQFSEQVFLSEHYNARIITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSRELDSILK 60

Query: 213 EARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
           E   L   G  ++T + Q+ +++      G+K     L+ ++ + + L   R    +P  
Sbjct: 61  EVEDLALKGYTDMTFIAQDSSSFLYD--KGQKDGLIQLIRAIDKQQALKSARILYLYPSS 118

Query: 273 MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAIS 332
            +  LI A  +  +   Y  +P+Q  SD +LK M R  +   + +++D ++ V+    I 
Sbjct: 119 TTLELIGAIENSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKKVKESF-IR 177

Query: 333 SDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLL 392
           S  IVG P E + +F      +D+  + +   F +S    T   + LE+V +     R+ 
Sbjct: 178 STIIVGHPEENEGEFEELSAFLDEFQFDRLNIFAFSAEENTHAYS-LEKVPKKTINARIK 236

Query: 393 CLQK-KLREQQVSFNDACVGQIIEVLIE 419
            L K  L+ Q  SF  A + + I+ L+E
Sbjct: 237 ALNKIALKHQNHSFK-ALLNKPIKALVE 263


>gi|302806527|ref|XP_002985013.1| hypothetical protein SELMODRAFT_424158 [Selaginella moellendorffii]
 gi|300147223|gb|EFJ13888.1| hypothetical protein SELMODRAFT_424158 [Selaginella moellendorffii]
          Length = 353

 Score = 83.2 bits (204), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 56/207 (27%), Positives = 93/207 (44%), Gaps = 23/207 (11%)

Query: 172 RKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQN 231
           RK      + I  GC   CT+C   + RG   S ++  +V   + ++  G      +G N
Sbjct: 48  RKNKFVEIIPINVGCLGACTYCKTKHARGHLGSYTVDTLVQRLKTVVSEG----RDIGAN 103

Query: 232 VNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL 291
           +                  L          R +Y      ++       +G    +  +L
Sbjct: 104 I----------------PALLRALVAALPHRQKYNAP---NLHLTASGGNGCHPCVYSFL 144

Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351
           H+ VQSG D +L+ M R +T  E+R+I+D +  + P+I I++D I GFPGET +DF   M
Sbjct: 145 HVLVQSGRDSVLEGMKREYTFSEFRKIVDTLTRLVPEIHIATDIICGFPGETSEDFDRIM 204

Query: 352 DLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           +L+ +  + Q    ++ PR GTP + M
Sbjct: 205 ELIREYTFPQVHISQFYPRPGTPAALM 231


>gi|15679182|ref|NP_276299.1| phosphonoacetaldehyde methylase [Methanothermobacter
           thermautotrophicus str. Delta H]
 gi|2622278|gb|AAB85660.1| phosphonoacetaldehyde methylase [Methanothermobacter
           thermautotrophicus str. Delta H]
          Length = 438

 Score = 83.2 bits (204), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 84/309 (27%), Positives = 140/309 (45%), Gaps = 43/309 (13%)

Query: 109 VAQAEGEEILRRSPIVNVVVG-------PQTYYRLPELLERARFGKRVVDTDYSVEDKFE 161
           V   EGE+  +  P++ +  G       P   +R PE          +V ++ S      
Sbjct: 90  VVMGEGED--KVGPVMELAAGNCKPEDVPGAAFRSPE---------GIVVSESSPCPMER 138

Query: 162 RLSIVDGGYNRK--RGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLI 218
            L +V G  +R+  RG + ++    GC   CTFC VP   G  + SR L  ++ E R+L 
Sbjct: 139 PLPLVPGDISREDIRGASVYIETHRGCPGNCTFCQVPEFFGRNVRSRPLKDIIMEVRELK 198

Query: 219 DNGVCEITLLGQNVNAW---RGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPR-DMS 274
            +G     + G     +   + +G+D E   F DLL  +SE+ G   L  T    R DM 
Sbjct: 199 SSGARRFAISGGTGTLYGSSKFRGIDEE--AFRDLLRCISEVTGSRNL--TVPDIRVDMV 254

Query: 275 DCLIKAHGDLDVLMPYLH----LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330
              I     LD +  Y +      ++SGS R+L+ M +  T  +  + ++  R    ++ 
Sbjct: 255 SPEI-----LDAISEYTNGWVFYGIESGSRRMLRKMKKGITPDQVVEAVELAREY--NLK 307

Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER 390
           ++  FIVG+PGE DDD++ T++L D++     F     P    PG+ + E+V E  + E 
Sbjct: 308 VAGSFIVGYPGEDDDDYQETLELADELMLDDYFVSIAEP---LPGTELGEEVMELPEDEN 364

Query: 391 LLCLQKKLR 399
            + ++   R
Sbjct: 365 PVFMKSSNR 373


>gi|254696400|ref|ZP_05158228.1| RNA modification protein [Brucella abortus bv. 2 str. 86/8/59]
          Length = 78

 Score = 82.8 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/56 (62%), Positives = 46/56 (82%)

Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKV 80
          ++ FVK+YGCQMNVYDS RM D   ++GY   ++ DDADL++LNTCHIREKA+EK+
Sbjct: 23 RKVFVKTYGCQMNVYDSQRMADSLAAEGYVATDTPDDADLVLLNTCHIREKASEKL 78


>gi|241068525|ref|XP_002408459.1| conserved hypothetical protein [Ixodes scapularis]
 gi|215492447|gb|EEC02088.1| conserved hypothetical protein [Ixodes scapularis]
          Length = 203

 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 66/225 (29%), Positives = 106/225 (47%), Gaps = 35/225 (15%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V ++GC++N+Y+S  +       G + V         + NTC +  KAAEK      + R
Sbjct: 9   VVTFGCRLNIYESEIIRKNLELSGIDNV--------AIFNTCAVT-KAAEK------QAR 53

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ-----TYYRLPELLERA 143
                  K   DL ++V GC AQ    ++    P V+ V+G +      YY++ +     
Sbjct: 54  QAICKAKKNNPDLKIIVTGCSAQTS-PQMYGNMPEVDKVIGNEEKLLPNYYQITD----- 107

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
              K  V+   SV++    L     G +R     AF+ +Q GCD FCTFC++PY RG   
Sbjct: 108 --EKITVNDIMSVKETASHLVSSFDGKSR-----AFIQVQNGCDHFCTFCIIPYGRGKSR 160

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS 248
           S ++  + ++ + L+ NG  E+   G +V A+ G  L G   TF+
Sbjct: 161 SVAIGAIAEQVKHLVLNGFKEVVFTGVDVTAY-GSDLPGSP-TFA 203


>gi|116753871|ref|YP_842989.1| radical SAM domain-containing protein [Methanosaeta thermophila PT]
 gi|116665322|gb|ABK14349.1| Radical SAM domain protein [Methanosaeta thermophila PT]
          Length = 430

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 78/272 (28%), Positives = 118/272 (43%), Gaps = 45/272 (16%)

Query: 109 VAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDG 168
           VA  EGEEI+R  P+   V+        P+L E++                         
Sbjct: 113 VAYREGEEIIRSEPLRMEVIDHTMPLFPPDLSEQS------------------------- 147

Query: 169 GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDNGVCEITL 227
                RG   ++    GC   CTFC VP   G  I SRSL  +V+E R+L   GV  + +
Sbjct: 148 ----VRGANVYIETHRGCLGGCTFCQVPRFFGRNIRSRSLENIVEEVRELRRMGVKRVAV 203

Query: 228 LGQNVNAWRGK-GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV 286
            G   + +  +  LD  K  F  +L  LS I G   L         + D +++A  +  +
Sbjct: 204 SGGTASLFGYRNALD--KDAFIRMLQELSGILGRKNLSVPDMRVDLVDDEILEAIREYTI 261

Query: 287 LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR----PDIAISSDFIVGFPGE 342
              +L   ++SGSDR+LK M +  T      ++D IR+V       + +   FIVG+PGE
Sbjct: 262 --GWLFFGIESGSDRMLKLMRKGVT------VLDNIRAVELARSHGVKVGGSFIVGYPGE 313

Query: 343 TDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
           + +DF  T+D +++      F     P  GTP
Sbjct: 314 SREDFEQTLDFMEEAMLDDVFVSIAEPIPGTP 345


>gi|330878024|gb|EGH12173.1| ribosomal protein S12 methylthiotransferase [Pseudomonas syringae
           pv. glycinea str. race 4]
          Length = 197

 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 65/198 (32%), Positives = 107/198 (54%), Gaps = 25/198 (12%)

Query: 287 LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR---PDIAISSDFIVGFPGET 343
           ++PYL +P Q  S +ILK M R   A+E + +  RI++ R   PD+ I S FIVGFPGET
Sbjct: 9   ILPYLDIPFQHASPKILKLMKR--PAFEDKTLA-RIKNWREQCPDLIIRSTFIVGFPGET 65

Query: 344 DDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ--VDENVKA---ERLLCLQKKL 398
           ++DF+  +D + +    +   F+YSP  G P +N+L+   V ++VK    +R +  Q+ +
Sbjct: 66  EEDFQYLLDWLTEAQLDRVGCFQYSPVEGAP-ANLLDAAIVPDDVKQDRWDRFMAHQQAI 124

Query: 399 REQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVVL----NSKNHNIGDI 450
              ++      +G+ IEVLI++   ++G  VGR    +P +   V           +GD 
Sbjct: 125 SAARLQMK---IGKEIEVLIDEV-DDRGA-VGRCFFDAPEIDGNVFIGLEEGSTVQLGDK 179

Query: 451 IKVRITDVKISTLYGELV 468
           I  R+TD     L+ E++
Sbjct: 180 IMCRVTDADEYDLWAEML 197


>gi|195098944|ref|XP_001997957.1| GH23519 [Drosophila grimshawi]
 gi|193891550|gb|EDV90416.1| GH23519 [Drosophila grimshawi]
          Length = 214

 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 87/165 (52%), Gaps = 7/165 (4%)

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           M R +   ++  ++D +RS  P + I++D I GFP ET+ DF  TM L +K  +   F  
Sbjct: 1   MKREYCRKDFEHVVDFLRSRVPGLTIATDIICGFPTETEQDFEETMTLCEKYQFPSLFIN 60

Query: 366 KYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDAC--VGQIIEVLIEKHGK 423
           ++ PR GTP + M E++  N+  +R     K+L +   S+       GQ+  VL+ +   
Sbjct: 61  QFFPRPGTPAAKM-ERIPANLVKKR----TKRLTDLFYSYEPYAGREGQLYTVLVTEISH 115

Query: 424 EKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           +K   VG +   + V+L  + + +G  ++VRIT     ++ GE++
Sbjct: 116 DKLHYVGHNKSYEQVLLPMRKNLLGTRVRVRITSSSKFSMMGEIL 160


>gi|331011330|gb|EGH91386.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Pseudomonas
           syringae pv. tabaci ATCC 11528]
          Length = 89

 Score = 81.3 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 41/91 (45%), Positives = 60/91 (65%), Gaps = 5/91 (5%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ +++++GCQMN YDS RM D+    Q  E     +DAD+I+LNTC IRE+A ++VYS 
Sbjct: 3   KKLYIETHGCQMNEYDSSRMVDLLGEHQALEVTARAEDADVILLNTCSIRERAQDRVYSQ 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG 114
           LGR R LK +      ++++ V GCVA  EG
Sbjct: 63  LGRWRELKLA----NPEMVIAVGGCVASQEG 89


>gi|289806634|ref|ZP_06537263.1| radical SAM superfamily protein [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
          Length = 134

 Score = 80.9 bits (198), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 41/104 (39%), Positives = 61/104 (58%)

Query: 287 LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDD 346
           ++PYL +P+Q  S RILK M R  +       I + R + P++ + S FIVGFPGET++D
Sbjct: 18  ILPYLDIPLQHASPRILKLMKRPGSVDRQLARIKQWREICPELTLRSTFIVGFPGETEED 77

Query: 347 FRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER 390
           F+  +D + +    +   FKYSP  G   + + +QV E VK ER
Sbjct: 78  FQMLLDFLKEARLDRVGCFKYSPVEGAGANELPDQVPEEVKEER 121


>gi|260891279|ref|ZP_05902542.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Leptotrichia hofstadii
           F0254]
 gi|260858955|gb|EEX73455.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Leptotrichia hofstadii
           F0254]
          Length = 122

 Score = 80.5 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 47/120 (39%), Positives = 70/120 (58%), Gaps = 2/120 (1%)

Query: 351 MDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACV 410
           MD+V+++G+  AF F YS R GTP + M EQVDE +K ERL  L +    +    +   +
Sbjct: 1   MDVVNEVGFENAFMFMYSKRTGTPAATMGEQVDEQIKNERLQQLMRLQNMKAKEESQKYL 60

Query: 411 GQIIEVLIEKHGKEKGK-LVGRSPWLQSVVLNSKNHNI-GDIIKVRITDVKISTLYGELV 468
           G+I++VL+E   ++  + L GRS   + V+  S   ++ G  +  RI D K  TLYGELV
Sbjct: 61  GKIVKVLVEGPSRKNPEMLTGRSSTHKIVLFKSDRKDLKGKFVNTRIYDAKTWTLYGELV 120


>gi|76154241|gb|AAX25732.2| SJCHGC04814 protein [Schistosoma japonicum]
          Length = 350

 Score = 79.7 bits (195), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 59/215 (27%), Positives = 97/215 (45%), Gaps = 34/215 (15%)

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           LV +    SHPR  S               +LH+PVQSGSD +L +M R +T  E+  ++
Sbjct: 52  LVEIAEVLSHPRVYS---------------FLHIPVQSGSDAVLDAMKREYTVEEFSTVV 96

Query: 320 DRI-RSVRPD----------------IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           D + ++V+P                 + I++D I GFP ET+ +F  T +L+ K  +   
Sbjct: 97  DYLMKNVKPPSLPPYALDDAPNGSGALTIATDVICGFPTETNKNFEETFELIKKYRFPVL 156

Query: 363 FSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422
              ++  R GTP +NM  + + +    R   L    R  +    D  +G  + VLI +  
Sbjct: 157 HINQFFARPGTPAANMSRKANSSEVKHRTRRLHDLFRSYRTY--DGRIGCEVRVLITEPS 214

Query: 423 KEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITD 457
            +    VG +   + ++L       G I+ VRIT+
Sbjct: 215 FDGKFWVGHTKAYEQILLPKLPDVYGCIVLVRITE 249


>gi|37498997|gb|AAQ91588.1| hypothetical protein [Helicobacter mustelae]
          Length = 175

 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 52/176 (29%), Positives = 95/176 (53%), Gaps = 19/176 (10%)

Query: 62  ADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRS 121
           AD+I++NTC   + A E+    +G I  +   R KEG   L+V  GC+ Q   +E+  + 
Sbjct: 5   ADVIIINTCGFIQSAKEES---IGMILKMAQER-KEGA--LIVANGCLTQRYQKELREQI 58

Query: 122 PIVNVVVGPQTYYRLPELLERARFGKRVVDTD--YSVEDKFERLSIVDGGYNRKRGVTAF 179
           P + ++ G   Y R+ E++E+    +R + +D  +  ++K ER  I+ G       + A+
Sbjct: 59  PEIGIITGVGDYDRIDEMIEQ----RRGISSDRVFLADEKKER--IITGSR-----IHAY 107

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW 235
           + I EGC++ C+FC +P  +G   SRS+  V+ E + L   G  + T + Q+ +++
Sbjct: 108 IKISEGCNQACSFCSIPSFKGKLKSRSIESVLKEIQNLSQRGYQDFTFIAQDSSSY 163


>gi|212274679|ref|NP_001130719.1| hypothetical protein LOC100191823 [Zea mays]
 gi|194689936|gb|ACF79052.1| unknown [Zea mays]
          Length = 308

 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 85/168 (50%), Gaps = 13/168 (7%)

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           MNR +T  E+R+++D +  + P + I++D I GFPGETD+DF  T++LV +  + Q    
Sbjct: 1   MNREYTVGEFRKVVDTLCELVPGMQIATDIICGFPGETDEDFSETVNLVKEYQFPQVHIS 60

Query: 366 KYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFND-----ACVGQIIEVLIEK 420
           ++ PR GTP + M +     VK        K+ RE    F          G++ ++ I +
Sbjct: 61  QFYPRPGTPAARMKKVPSNEVK--------KRSRELTSVFESFSPYQGMEGKVEKIWITE 112

Query: 421 HGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
              +   LVG +     V++ + +  +G     +IT V   +++G +V
Sbjct: 113 IASDGVHLVGHTKGYIQVLVTAPDSMLGTSADAKITSVGRWSVFGVVV 160


>gi|88603413|ref|YP_503591.1| radical SAM family protein [Methanospirillum hungatei JF-1]
 gi|88188875|gb|ABD41872.1| Radical SAM [Methanospirillum hungatei JF-1]
          Length = 444

 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 60/211 (28%), Positives = 97/211 (45%), Gaps = 23/211 (10%)

Query: 174 RGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDNGVCEITLLGQNV 232
           RG   ++    GC   C FC VP   G  I SR L +++ E +     GV  + L+G   
Sbjct: 163 RGAQTYIETHRGCFGRCGFCQVPRVFGRRIRSRELDEILKEVKAFQKKGVRRLALIGGTG 222

Query: 233 NAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCL-------IKAHGDLD 285
           + +R K  +     F  LL  +S I G        S P   +DCL       ++AH    
Sbjct: 223 SLYRSKEGEVNSDAFISLLEGISSIMG----PKNVSCPDIRADCLTDEVLEAVRAH---- 274

Query: 286 VLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR--SVRPDIAISSDFIVGFPGET 343
             + ++   ++SGS+++L  M +     + R  I++ R   V+P    +  FI G+PGE 
Sbjct: 275 -TIGWIFFGIESGSEKMLGLMQKGIPIDKVRDAIEQCRQYGVKP----AGSFITGYPGEE 329

Query: 344 DDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
           ++DF+AT DL++++     F     P   TP
Sbjct: 330 EEDFQATKDLMEELTLDDVFISIAEPIPSTP 360


>gi|221124406|ref|XP_002163891.1| PREDICTED: similar to Y92H12BL.1 [Hydra magnipapillata]
          Length = 353

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 56/197 (28%), Positives = 94/197 (47%), Gaps = 22/197 (11%)

Query: 178 AFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA--- 234
           A+L I EGC+  CTFC++P  RG  +SR +  V+ EAR L + GV E+ ++ Q+ +A   
Sbjct: 92  AYLKISEGCNHRCTFCIIPSMRGDLVSRPIGDVLSEARALFEGGVKELLVISQDTSAYGV 151

Query: 235 --------WRGKGLDGEKCTFSDLLYSLSEIKG-LVRLRYTTSHPRDMSDCLIKAHGDLD 285
                   W GK +          L  L+E  G  VRL Y   +P       + A G   
Sbjct: 152 DVKYRTGFWDGKPVKTRMLELVQALGELAEPYGAWVRLHYVYPYPSVDEIVPLMATGR-- 209

Query: 286 VLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDD 345
            ++PYL +P+Q     +L+ M R  +     + ++R++      A ++D     P E  +
Sbjct: 210 -VLPYLDVPLQHSHPDVLRRMKRPASG---EKNLERLQXX---XATANDLPGMLPVEVRE 262

Query: 346 DFRAT-MDLVDKIGYAQ 361
           + RA  M + +++  A+
Sbjct: 263 ERRARFMQVAEEVSAAR 279


>gi|218660819|ref|ZP_03516749.1| MiaB-like tRNA modifying enzyme [Rhizobium etli IE4771]
          Length = 164

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/126 (36%), Positives = 67/126 (53%), Gaps = 7/126 (5%)

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
           D ILK M RRH+     + I+ +R VRP++   +D I GFP ET++ F   + L ++ G 
Sbjct: 1   DMILKRMKRRHSRAGALRFIEDVRRVRPEMTFGADMIAGFPTETEEMFGNAVRLAEEAGI 60

Query: 360 AQAFSFKYSPRLGTPGSNMLEQVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEV 416
           A    F YSPR GTP + M  Q+D  +   +A RL     KL +  +   D  VG    +
Sbjct: 61  AHLHVFPYSPRPGTPAARM-PQLDRALVKDRAARLRATGHKLYQSHL---DGMVGTRQWL 116

Query: 417 LIEKHG 422
           L+E +G
Sbjct: 117 LVENNG 122


>gi|195388800|ref|XP_002053066.1| GJ23539 [Drosophila virilis]
 gi|194151152|gb|EDW66586.1| GJ23539 [Drosophila virilis]
          Length = 189

 Score = 77.4 bits (189), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 55/174 (31%), Positives = 83/174 (47%), Gaps = 14/174 (8%)

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           M R +T   Y +++  IR + PD+ +SSDFI GF GETD +F  T+ L++ + Y  AF F
Sbjct: 1   MRRGYTREAYLELVSHIRQMLPDVGLSSDFICGFCGETDSEFEDTISLIESVRYNVAFLF 60

Query: 366 KYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGK 423
            YS R  T      ++ V   VK  RL  + +  RE     +    GQ   +LIE K  +
Sbjct: 61  AYSMREKTTAHRRYVDDVPALVKTARLQRMVQAFREGATQLHKRFEGQEQLILIEGKSKR 120

Query: 424 EKGKLVGRSPWLQSVV------------LNSKNHNIGDIIKVRITDVKISTLYG 465
            +    GR+     V+            +++K+ N+GD +  RI D     L G
Sbjct: 121 SENFWFGRNDANIKVIVPAASLPTAEANVSAKDINVGDFVVARIVDSNSQVLKG 174


>gi|257459328|ref|ZP_05624441.1| 2-methylthioadenine synthetase [Campylobacter gracilis RM3268]
 gi|257443257|gb|EEV18387.1| 2-methylthioadenine synthetase [Campylobacter gracilis RM3268]
          Length = 511

 Score = 77.0 bits (188), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 54/205 (26%), Positives = 98/205 (47%), Gaps = 15/205 (7%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ DS  M      Q YE  +    AD++++NTC     A ++    +     L
Sbjct: 8   SLGCNKNLVDSEIMLGRL--QNYELTDEPASADVMIVNTCGFIASAKQESIRAI-----L 60

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
           K S  K+ G LLVV  GC+ Q   +E++R  P V++  G   Y ++ E++ + +      
Sbjct: 61  KLSEQKKSGALLVVT-GCLMQRYKDELMRELPEVDIFSGVGDYDKIDEMILKKQ------ 113

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
              +S +   +  ++            A++ I EGC++ C+FC +P  +G   SRS+  +
Sbjct: 114 -NLFSPQTYLQSPALTSSRVITGSNYHAYVKISEGCNQKCSFCAIPSFKGRLKSRSIDDI 172

Query: 211 VDEARKLIDNGVCEITLLGQNVNAW 235
             E R L+  G  + + + Q+ +++
Sbjct: 173 EAEVRGLVARGFYDFSFIAQDSSSY 197



 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/217 (23%), Positives = 97/217 (44%), Gaps = 11/217 (5%)

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
           L+  + +IKG+   R    +P    + LI+      V   Y  +P+Q  +D++L  M R 
Sbjct: 283 LIKRIEKIKGVKVARVLYLYPTSTDERLIRTIVSSPVFANYFDMPIQHINDKMLSLMKRG 342

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369
             A   ++++  +R   P+  + +  IVG PGE + +F      + +  + +  +F YS 
Sbjct: 343 AGAARIKELLSLMREA-PNSFLRTGVIVGHPGEGEAEFDELCAFLREFKFDRISAFAYSK 401

Query: 370 RLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV 429
              T  S  + Q+     + RL  ++K  RE   +   A VG+ + ++IE    E     
Sbjct: 402 EEDT-ASFAMPQILARTISRRLNKIEKITREAIDNSMRALVGKKMPLIIEGASSEGEFFY 460

Query: 430 GRSP--WLQ----SVVLNS---KNHNIGDIIKVRITD 457
           G  P  W +     +++N    +N  +G + +  IT+
Sbjct: 461 GAKPLAWDKDIDGEILINESYVQNLKVGGLYECEITE 497


>gi|88602458|ref|YP_502636.1| radical SAM family protein [Methanospirillum hungatei JF-1]
 gi|88187920|gb|ABD40917.1| Radical SAM [Methanospirillum hungatei JF-1]
          Length = 372

 Score = 76.6 bits (187), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 88/317 (27%), Positives = 135/317 (42%), Gaps = 35/317 (11%)

Query: 98  GGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV---VDTDY 154
             D + V+ G  A A  +E++    I + VV  +  Y +P LL+    G  V   V T  
Sbjct: 58  AADTITVIGGPHACARWDELVH---IADYVVVGEGEYTVPRLLQSIESGTPVPPGVATAS 114

Query: 155 SVEDKFERLSIVDG--GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVV 211
           S +   +    +DG   ++  +G   ++ I  GC   CT+C  P   G  I  RS+  +V
Sbjct: 115 SFQ-PVDHTVFLDGNPSFSEYKG---YIEISRGCPYGCTYCQTPRIFGNTIRHRSIGSIV 170

Query: 212 DEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPR 271
             A    D     I  L  N  A+   GL  +      LL+ L++I    +  +  + P 
Sbjct: 171 RLAHSFHD-----IRFLSPNALAYGTDGLHPDPRHIRSLLHELAKIPD--KDIFLGTFPG 223

Query: 272 DMSDCLIKAHGDLDVLMPY-----LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
           ++    +     +D++  Y     +H+  QSG++  LK + R HT  +  + ID      
Sbjct: 224 EIRPEFVSEEA-VDLIARYCSNTRIHIGAQSGAESTLKRIRRGHTLSDVWRAIDHTTDA- 281

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDL---VDKIGYAQAFSFKYSPRLGTP--GSNMLEQ 381
                  D IVGFP ETD++  AT+     V KIGY  A  F   P  GTP  G    + 
Sbjct: 282 -GFTPVVDIIVGFPDETDEELLATVSFCREVSKIGYVHAHRFFSLP--GTPLEGRVSRDL 338

Query: 382 VDENVKAERLLCLQKKL 398
           + E V A   L L  +L
Sbjct: 339 IPEVVSALGSLALSGRL 355


>gi|261339141|ref|ZP_05966999.1| hypothetical protein ENTCAN_05362 [Enterobacter cancerogenus ATCC
           35316]
 gi|288318984|gb|EFC57922.1| RNA modification enzyme, MiaB-family [Enterobacter cancerogenus
           ATCC 35316]
          Length = 167

 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 87/157 (55%), Gaps = 10/157 (6%)

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           I + R + PD+ + S FIVGFPGET++DF+  +D + +    +   FKYSP  G   + +
Sbjct: 14  IKQWREICPDLTLRSTFIVGFPGETEEDFQMLLDFLKEARLDRVGCFKYSPVDGATANEL 73

Query: 379 LEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSP 433
            +QV E VK E   R + LQ+++  +++      VG+ + V+I++  +E   G+ +  +P
Sbjct: 74  ADQVPEEVKEERWNRFMQLQQQISAERLQEK---VGREVLVIIDEVDEEGAIGRSMADAP 130

Query: 434 WLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468
            +   V  +   N+  GDII+V++ +     L+G  V
Sbjct: 131 EIDGAVYLNGETNVKPGDIIRVKVENADEYDLWGSRV 167


>gi|293397288|ref|ZP_06641560.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Serratia odorifera DSM
          4582]
 gi|291420206|gb|EFE93463.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Serratia odorifera DSM
          4582]
          Length = 75

 Score = 75.5 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/68 (48%), Positives = 51/68 (75%), Gaps = 1/68 (1%)

Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
          ++  +K++GCQMN YDS +M D+  S  GY+  ++ ++AD+++LNTC IREKA EKV++ 
Sbjct: 3  KKLHIKTWGCQMNEYDSSKMADLLGSTHGYQWTDNAEEADVLLLNTCSIREKAQEKVFAM 62

Query: 84 LGRIRNLK 91
          LGR + LK
Sbjct: 63 LGRWKLLK 70


>gi|330901912|gb|EGH33273.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Pseudomonas
           syringae pv. japonica str. M301072PT]
          Length = 128

 Score = 75.1 bits (183), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 44/125 (35%), Positives = 67/125 (53%), Gaps = 2/125 (1%)

Query: 346 DFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSF 405
           DF  TM L++ +G+  +FSF YSPR GTP +++ +   E +K ERL  LQ +L +Q    
Sbjct: 3   DFDNTMKLIEDVGFDFSFSFVYSPRPGTPAADLKDDTPEALKKERLAALQHRLNQQGFEI 62

Query: 406 NDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLNSKNHN-IGDIIKVRITDVKISTL 463
           +   VG I  +L+  +  K+ G+L GR+   + V     N   IG    V I D +  +L
Sbjct: 63  SRQMVGSIQRILVTDYSKKDPGELQGRTENNRIVNFRCDNPKLIGQFADVHIDDAQPHSL 122

Query: 464 YGELV 468
            G L+
Sbjct: 123 RGSLL 127


>gi|302806569|ref|XP_002985034.1| hypothetical protein SELMODRAFT_424054 [Selaginella moellendorffii]
 gi|300147244|gb|EFJ13909.1| hypothetical protein SELMODRAFT_424054 [Selaginella moellendorffii]
          Length = 613

 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 33/81 (40%), Positives = 53/81 (65%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +LH+ VQSG D +L+ M R +T  E+R+I+D +  + P+I I++D I GFPGET +DF  
Sbjct: 186 FLHVLVQSGRDSVLEGMKREYTFSEFRKIVDTLTRLVPEIHIATDVICGFPGETSEDFDR 245

Query: 350 TMDLVDKIGYAQAFSFKYSPR 370
            M+L+ +  + Q    ++ PR
Sbjct: 246 IMELIREYTFPQVHISQFYPR 266


>gi|47220777|emb|CAF99984.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 401

 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 71/155 (45%), Gaps = 33/155 (21%)

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           G+    Y   H  +M+  L         +  +LH+PVQS SD +L  M R +   +++ +
Sbjct: 5   GMTNPPYILEHLEEMAKILTHPR-----VYAFLHVPVQSASDSVLMDMKREYCVSDFKTV 59

Query: 319 IDRIR---------------------------SVRPDIAISSDFIVGFPGETDDDFRATM 351
           +D ++                           +  P + I++D I GFPGETD DF+ T+
Sbjct: 60  VDFLKERPLWQHGEFTRENGTQEPGAGFPVFHARVPGVTIATDVICGFPGETDKDFQETL 119

Query: 352 DLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           DLV    +   F  ++ PR GTP + M EQV  ++
Sbjct: 120 DLVKLYRFPSLFINQFYPRPGTPAAKM-EQVPAHI 153


>gi|126178881|ref|YP_001046846.1| radical SAM domain-containing protein [Methanoculleus marisnigri
           JR1]
 gi|125861675|gb|ABN56864.1| Radical SAM domain protein [Methanoculleus marisnigri JR1]
          Length = 369

 Score = 74.3 bits (181), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 89/302 (29%), Positives = 129/302 (42%), Gaps = 31/302 (10%)

Query: 89  NLKNSRIKE----GGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL---E 141
           N  N RI      G D + +V G  A A   E+   +  V  VVG +  Y LP LL   E
Sbjct: 45  NSINERIYRDEIVGADCITIVGGPHASACYREVAEYADYV--VVG-EGEYTLPALLSAIE 101

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
             R     V T         R +++  GY     +  F+ I  GC   C +C  P   G 
Sbjct: 102 EGRDPPPGVATAAGYTPA--RHTVLLDGYPPFSRIKGFVEITRGCPFSCGYCQTPRLFGR 159

Query: 202 EI-SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            +  RS+ ++V  A +  D     I  +  N  A+   G DG       +   L  +KG 
Sbjct: 160 CMRHRSIDEIVRYASRYRD-----IRFVTPNAFAY---GSDGVHLRLDKVERLLRSLKGR 211

Query: 261 VRLRYTTSHPRDM-SDCLIKAHGDL---DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           V   Y  + P ++  +C+ +   +L         LH   QSGSDR+L+ ++R HT  +  
Sbjct: 212 V---YFGTFPGEVRPECISQQSVELVLDTCANTRLHFGAQSGSDRVLRHLHRGHTVEDVV 268

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY-AQAFSFKYSPRLGTPG 375
           +  D  R     +    DFI+G P E+DDD RAT+DLV  +    +A    + P  GTP 
Sbjct: 269 RAFDLCREH--GLVPVVDFILGLPFESDDDQRATLDLVKMVTRGGKAHIHYFMPLPGTPL 326

Query: 376 SN 377
            N
Sbjct: 327 QN 328


>gi|213584410|ref|ZP_03366236.1| hypothetical protein SentesTyph_25585 [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
          Length = 121

 Score = 74.3 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 42/119 (35%), Positives = 63/119 (52%), Gaps = 3/119 (2%)

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
           LS++    RL Y   +P       + A G +   +PYL +P+Q  S RILK M R  +  
Sbjct: 4   LSKLGVWTRLHYVYPYPHVDDVIPLMAEGKI---LPYLDIPLQHASPRILKLMKRPGSVD 60

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
                I + R + P++ + S FIVGFPGET++DF+  +D + +    +   FKYSP  G
Sbjct: 61  RQLARIKQWREICPELTLRSTFIVGFPGETEEDFQMLLDFLKEARLDRVGCFKYSPVEG 119


>gi|307354286|ref|YP_003895337.1| Radical SAM domain-containing protein [Methanoplanus petrolearius
           DSM 11571]
 gi|307157519|gb|ADN36899.1| Radical SAM domain protein [Methanoplanus petrolearius DSM 11571]
          Length = 437

 Score = 73.9 bits (180), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 67/256 (26%), Positives = 117/256 (45%), Gaps = 24/256 (9%)

Query: 108 CVAQAEGEEILRR---SPIVNVVVGPQTYYRLPELL-----ERARFGKRVVDTDYSVEDK 159
           CV   EGEE +++     + N   G   Y    E++     ER    KR +         
Sbjct: 93  CVCVGEGEETVKKLAGDGVSNDFPGLAFYDDGSEIVFTGKAERVDVNKRPLP-------- 144

Query: 160 FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLI 218
              L   D G    RG +A++    GC   CTFC VP   G +I SRS+  ++ E R+  
Sbjct: 145 ---LIPPDIGSQDIRGASAYIETHRGCTGGCTFCQVPRYFGRDIQSRSVEDILKEVREFK 201

Query: 219 DNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLI 278
             G   +++ G   + ++ K  +  +  F +L+  ++EI G   +         +SD ++
Sbjct: 202 KRGAKRLSVSGGTGSLFQYKNGEINEEKFIELMKGMAEIMGPKNISSPDIRVDCISDNIL 261

Query: 279 KAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVG 338
           +A  +  +   ++   ++SGSDR+LK M +  TA +  + +         +  +  FIVG
Sbjct: 262 EAIRNYTI--GWIFFGLESGSDRVLKKMGKGATANQAAEAVAACH--EHGLKAAGSFIVG 317

Query: 339 FPGETDDDFRATMDLV 354
           +PGET++D+  T D +
Sbjct: 318 YPGETEEDYEMTKDFI 333


>gi|304315299|ref|YP_003850446.1| hypothetical protein MTBMA_c15540 [Methanothermobacter marburgensis
           str. Marburg]
 gi|302588758|gb|ADL59133.1| conserved hypothetical protein [Methanothermobacter marburgensis
           str. Marburg]
          Length = 430

 Score = 73.9 bits (180), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 60/226 (26%), Positives = 107/226 (47%), Gaps = 39/226 (17%)

Query: 174 RGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDNGVCEITLLGQNV 232
           RG + ++    GC   CTFC VP   G E+ SR L  ++ E R+L  +G     + G   
Sbjct: 153 RGASVYIETHRGCPGNCTFCQVPEFFGREVRSRPLEDIIREVRELRKSGARRFAISGGTG 212

Query: 233 NAW---RGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMP 289
             +   R +G+D  +  F++LL  +SEI G          PR+++   I+    +D++ P
Sbjct: 213 TLYGSSRFRGID--EDAFTELLREISEITG----------PRNLTVPDIR----VDMVTP 256

Query: 290 ------------YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP-DIAISSDFI 336
                       ++   ++SGS RIL+ M +     +   +I+ +   R  ++ ++  FI
Sbjct: 257 EILDAISEYTNGWVFYGIESGSRRILRRMKK---GIKPGDVIEAVELAREHNLKVAGSFI 313

Query: 337 VGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           VG+PGE + D   T++L D++     F     P    PG+ + ++V
Sbjct: 314 VGYPGEDERDHEETLELADELMLDDYFVSIAEP---IPGTELGDEV 356


>gi|157781905|gb|ABV72278.1| MiaB [Azospirillum brasilense]
          Length = 133

 Score = 73.6 bits (179), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 46/136 (33%), Positives = 74/136 (54%), Gaps = 5/136 (3%)

Query: 168 GGY-NRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEIT 226
           GG+ +R R   AF+ +Q+GCD  CTFC++PY RG   S  +  VV++ + L+  G  E+ 
Sbjct: 2   GGFEDRAR---AFVQVQQGCDHRCTFCIIPYGRGPSRSVPIGAVVEQVQALVKAGYNEVV 58

Query: 227 LLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV 286
           L G ++ ++ G  L G       +   L+ +  L RLR ++    ++ D L +       
Sbjct: 59  LSGVDITSF-GPDLPGTPTLGQMVRRLLALVPELPRLRLSSLDCIEIDDDLWRLIETEPR 117

Query: 287 LMPYLHLPVQSGSDRI 302
           LMP+LHL +Q+G D I
Sbjct: 118 LMPHLHLSLQAGDDMI 133


>gi|213420671|ref|ZP_03353737.1| hypothetical protein Salmonentericaenterica_24192 [Salmonella
           enterica subsp. enterica serovar Typhi str. E01-6750]
          Length = 166

 Score = 73.6 bits (179), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 55/179 (30%), Positives = 86/179 (48%), Gaps = 24/179 (13%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  FV S GC  N+ DS R+     ++GY+ V   DDAD++++NTC   + A ++    
Sbjct: 8   PKIGFV-SLGCPKNLVDSERILTELRTEGYDVVPHYDDADMVIVNTCGFIDSAVQESLEA 66

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G   N       E G   V+V GC+   E ++I    P V  + GP +Y ++ + +   
Sbjct: 67  IGEALN-------ENGK--VIVTGCLGAKE-DQIREVHPKVLEITGPHSYEQVLQHVHH- 115

Query: 144 RFGKRVVDTDYSVEDKFER-LSIV-DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
                     Y  + K    LS+V + G        A+L I EGC+  CTFC++P  RG
Sbjct: 116 ----------YVPKPKHNPFLSLVPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRG 164


>gi|167947810|ref|ZP_02534884.1| hypothetical protein Epers_15212 [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 155

 Score = 73.6 bits (179), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 32/85 (37%), Positives = 53/85 (62%)

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           M RR  + E+R++++  R   PD+ I+SD IVGFPGET+ D++ ++  V+++G+     F
Sbjct: 1   MARRCKSDEFRRLVEEGRQQVPDLNITSDIIVGFPGETEADWQQSLSFVEQMGFGHLHIF 60

Query: 366 KYSPRLGTPGSNMLEQVDENVKAER 390
            YSPR GT  + +   V   +K +R
Sbjct: 61  AYSPRSGTKAAGLPNPVPREIKRQR 85


>gi|284098392|ref|ZP_06385871.1| tRNA 2-methylthioadenosine synthase [Candidatus Poribacteria sp.
           WGA-A3]
 gi|283830565|gb|EFC34728.1| tRNA 2-methylthioadenosine synthase [Candidatus Poribacteria sp.
           WGA-A3]
          Length = 125

 Score = 73.2 bits (178), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 36/87 (41%), Positives = 58/87 (66%), Gaps = 4/87 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +R ++++YGCQMNV DS  M  +    G++ V  +DDAD++++NTC IRE A  KV   +
Sbjct: 36  RRVYIETYGCQMNVSDSELMAGILTQSGHQTVTHIDDADVVLVNTCAIRENAETKV---I 92

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQ 111
            R+++L N R +   +L++ V GC+AQ
Sbjct: 93  NRLQHL-NHRKRRQPELIIGVCGCMAQ 118


>gi|315927398|gb|EFV06736.1| miaB-like tRNA modifying enzyme YliG, TIGR01125 [Campylobacter
           jejuni subsp. jejuni DFVF1099]
          Length = 263

 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 49/180 (27%), Positives = 90/180 (50%), Gaps = 4/180 (2%)

Query: 217 LIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDC 276
           ++  G  + + + Q+ +++      GEK     L+  + +IKG+   R    +P   S+ 
Sbjct: 1   MVARGYKDFSFIAQDTSSYLFD--KGEKDGLIRLIDEVEKIKGIRAARILYLYPTSASEA 58

Query: 277 LIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFI 336
           LIK     ++ + Y  +P+Q  SD +LK M R   +   +++++ ++S  P+  + + FI
Sbjct: 59  LIKRIIASEIFINYFDMPLQHISDNMLKIMKRGANSTRLKEMLNLMKSA-PNSFLRTGFI 117

Query: 337 VGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQK 396
           VG PGE++ DF    + V   G+ +   F YS    T   +M EQV   V  +RL  ++K
Sbjct: 118 VGHPGESEADFEELCEFVKDFGFDRISVFAYSKEEDTAAFDM-EQVPFKVINKRLKIIEK 176


>gi|301169364|emb|CBW28964.1| unnamed protein product [Haemophilus influenzae 10810]
          Length = 143

 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/143 (33%), Positives = 83/143 (58%), Gaps = 14/143 (9%)

Query: 333 SDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLL 392
           S FIVGFPGET++DF+  +D + +    +   FK+SP  G P ++M +QV E+VK ER  
Sbjct: 3   STFIVGFPGETEEDFQLLLDFLKEAQLDRVGCFKFSPVEGAPATDMADQVPEDVKEERFH 62

Query: 393 CLQKKLREQQVSFN--DACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVV----LNS 442
              +   +Q++S N     +G+ ++VL+++   ++  ++GRS    P +  +V    L+ 
Sbjct: 63  RFMQ--LQQEISANRLKQKIGKTLDVLVDEI--DEDGIIGRSKADAPEVDGLVYVDNLSG 118

Query: 443 KNHNIGDIIKVRITDVKISTLYG 465
            N  +G++IKV IT+     L+G
Sbjct: 119 INVKVGNVIKVTITNSDEYDLWG 141


>gi|71901263|ref|ZP_00683362.1| Protein of unknown function UPF0004 [Xylella fastidiosa Ann-1]
 gi|71728954|gb|EAO31086.1| Protein of unknown function UPF0004 [Xylella fastidiosa Ann-1]
          Length = 113

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 32/64 (50%), Positives = 48/64 (75%), Gaps = 1/64 (1%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + F+K++GCQMN YDS +M D+  + +  E  ++ ++AD+I++NTC IREKA EKV+S L
Sbjct: 49  KLFIKTHGCQMNEYDSAKMADVLTTTEALELTDNPEEADIILINTCSIREKAQEKVFSQL 108

Query: 85  GRIR 88
           GR R
Sbjct: 109 GRWR 112


>gi|149924340|ref|ZP_01912708.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Plesiocystis
           pacifica SIR-1]
 gi|149814778|gb|EDM74349.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Plesiocystis
           pacifica SIR-1]
          Length = 251

 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 57/220 (25%), Positives = 102/220 (46%), Gaps = 19/220 (8%)

Query: 1   MGLFIKLIGVAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD 60
           M + + ++G     S+ V     P++ +  S GC  N  D+  M  +  + G++ V+   
Sbjct: 1   MTVNLPVVGNGPQPSEPVSG---PKKVYFVSLGCPKNQVDTEVMLGVVQANGHQLVDDPS 57

Query: 61  DADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVV-----VAGCVAQAEGE 115
           +AD +V+NTC   + A ++    +  I  L   + +  GD  VV     VAGC++Q    
Sbjct: 58  EADTLVVNTCGFIDAAKQE---SIDTILELAAVKAEAAGDASVVDKRLVVAGCLSQRYPT 114

Query: 116 EILRRSPIVNVVVGPQTYYRLPELLERA--RFGKRVVDTDYSVEDKFERLSIVDGGYNRK 173
           E+    P V+  +G      + ++L  A  R G   ++    + D      +V  G++  
Sbjct: 115 ELAAEMPEVDHFLGSADMLGMAKVLGGAAGRMGVSELNRRAWLYDHSTPRQVVGVGHSN- 173

Query: 174 RGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
                ++ I EGCD+ C FC++P  RG + SR +  +V E
Sbjct: 174 -----YVKIAEGCDRPCGFCIIPKLRGPQRSRPVFDIVQE 208


>gi|242399457|ref|YP_002994882.1| Fe-S oxidoreductase family protein [Thermococcus sibiricus MM 739]
 gi|242265851|gb|ACS90533.1| Fe-S oxidoreductase family protein [Thermococcus sibiricus MM 739]
          Length = 424

 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 58/211 (27%), Positives = 97/211 (45%), Gaps = 20/211 (9%)

Query: 176 VTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDNGVCEITLLGQNVNA 234
           + A + I  GC   C +C  PY +G  +  R + Q+V  ++++ D     +  +  N  A
Sbjct: 164 LIAPIEISRGCPFGCYYCQTPYVKGFRMRHRPIDQIVKYSKRMKD-----MRYITPNAFA 218

Query: 235 WRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY---- 290
           +   G          LL +L  I+   R  +  + P ++    IK    L++L+ Y    
Sbjct: 219 YGSPGGILNLNKLEALLKALQPIRKEGRRLFYGTFPSEVRPEFIKPE-TLELLLKYADNR 277

Query: 291 -LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
            L +  QSG D + K+M+R HT    RQ ++ +  +  DI    DFIVG P ET +  R 
Sbjct: 278 RLAIGAQSGDDEMFKAMHRMHTTENVRQAVEYM--LEYDIEPVVDFIVGLPNETKESQRK 335

Query: 350 TMD----LVDKIGYAQAFSFKYSPRLGTPGS 376
           +++    ++ K G  +A  F   P  GTP +
Sbjct: 336 SIEFMKWIIKKGGKVRAHYF--MPLPGTPWA 364


>gi|224537219|ref|ZP_03677758.1| hypothetical protein BACCELL_02096 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224521175|gb|EEF90280.1| hypothetical protein BACCELL_02096 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 122

 Score = 71.2 bits (173), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 37/109 (33%), Positives = 67/109 (61%), Gaps = 5/109 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F+++YGCQMNV DS  +  +    GY   +++++AD + +NTC IR+ A +K+ + L
Sbjct: 18  KKLFIETYGCQMNVADSEVIASVMQMAGYSTADTLEEADAVFMNTCSIRDNAEQKILNRL 77

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTY 133
               +LK    K+  +L+V V GC+A+   ++++     V++VVGP  Y
Sbjct: 78  EFFYSLK----KKKRNLIVGVLGCMAERVKDDLITNHH-VDLVVGPDAY 121


>gi|942591|gb|AAC44029.1| unknown [Mycoplasma iowae]
          Length = 199

 Score = 70.9 bits (172), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 45/200 (22%), Positives = 100/200 (50%), Gaps = 18/200 (9%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           F + + GC++N+++S  +++     G   V     AD+ ++NTC +  KA  K   ++ R
Sbjct: 10  FAIHTLGCKVNLFESNSIKNDLIMNGLVEVPFDSKADVYIINTCTVTNKADAKSRLYIKR 69

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ----TYYRLPELLER 142
                     +  D +++VAGC++Q   +  L     +++ +G +     +  + E L++
Sbjct: 70  AH-------VQNKDAIIIVAGCMSQVNKD--LMDKLKISIQIGNKYKNSVFDLINEYLKK 120

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
                RV   +   E KFE+ +     +       AF+ IQ+GC+  C++C++P++RG +
Sbjct: 121 RERIYRV--ENILAEKKFEQTT---QDFIFLENTRAFIKIQDGCNFMCSYCIIPFSRGRQ 175

Query: 203 ISRSLSQVVDEARKLIDNGV 222
            S+ +  ++++ + L+   +
Sbjct: 176 RSQKMESILEKIKTLVSKNL 195


>gi|270622238|ref|ZP_06221893.1| Fe-S oxidoreductase [Haemophilus influenzae HK1212]
 gi|270317708|gb|EFA29111.1| Fe-S oxidoreductase [Haemophilus influenzae HK1212]
          Length = 128

 Score = 70.5 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 42/114 (36%), Positives = 62/114 (54%), Gaps = 6/114 (5%)

Query: 235 WRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP 294
           W G  ++ +  T   L   L ++   VRL Y   +P    D LI    D   L+PYL +P
Sbjct: 15  WNGMPIENDLMT---LCKQLGKLGIWVRLHYVYPYPH--VDDLIPLMAD-GTLLPYLDIP 68

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFR 348
           +Q  S +ILK+M R  +     + I + R + PD+ + S FIVGFPGET++DF+
Sbjct: 69  LQHASPKILKAMKRPGSIDRTLERIKQWREICPDLTLRSTFIVGFPGETEEDFQ 122


>gi|60280029|gb|AAX16370.1| 2-methylthioadenine synthetase [uncultured murine large bowel
           bacterium BAC 14]
          Length = 185

 Score = 70.5 bits (171), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 38/114 (33%), Positives = 64/114 (56%), Gaps = 7/114 (6%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V ++GCQMN  DS ++  +    GYE +   +DADL++ NTC +R+ A ++VY  LG + 
Sbjct: 45  VTTFGCQMNARDSEKLAGILEQAGYELIED-EDADLVIYNTCTVRDNANQRVYGRLGFL- 102

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELL 140
              N R K+   + + + GC+ Q E   ++I R    V+++ G    ++  ELL
Sbjct: 103 ---NGRKKKKPHMKIALCGCMMQEESVIKKIKRSYRFVDLIFGTHNIFKFAELL 153


>gi|56205136|emb|CAI19389.1| CDK5 regulatory subunit associated protein 1 [Homo sapiens]
          Length = 255

 Score = 70.5 bits (171), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 57/190 (30%), Positives = 89/190 (46%), Gaps = 17/190 (8%)

Query: 293 LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352
           +PVQ+ +      +  R     Y +++  IR   P +++SSDFI GF GET++D   T+ 
Sbjct: 57  MPVQTSASATSAFVYSREA---YVELVHHIRESIPGVSLSSDFIAGFCGETEEDHVQTVS 113

Query: 353 LVDKIGYAQAFSFKYSPRLGTPGSNML-EQVDENVKAERLLCLQKKLREQQVSFNDACVG 411
           L+ ++ Y   F F YS R  T   + L + V E VK  RL  L    RE+    N   VG
Sbjct: 114 LLREVQYNMGFLFAYSMRQKTRAYHRLKDDVPEEVKLRRLEELITIFREEATKANQTSVG 173

Query: 412 QIIEVLIEKHGKEKGK-LVGRSPW-LQSVVLNSKNHNI-----------GDIIKVRITDV 458
               VL+E   K     L GR+   L+ +  +++  ++           GD + V+IT  
Sbjct: 174 CTQLVLVEGLSKRSATDLCGRNDGNLKVIFPDAEMEDVNNPGLRVRAQPGDYVLVKITSA 233

Query: 459 KISTLYGELV 468
              TL G ++
Sbjct: 234 SSQTLRGHVL 243



 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 18/53 (33%), Positives = 31/53 (58%)

Query: 108 CVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKF 160
           C+A+   EEIL R  +V+++ GP  Y  LP LL  A  G++  +   S+++ +
Sbjct: 1   CMAERLKEEILNREKMVDILAGPDAYRDLPRLLAVAESGQQAANVLLSLDETY 53


>gi|119596727|gb|EAW76321.1| CDK5 regulatory subunit associated protein 1, isoform CRA_d [Homo
           sapiens]
          Length = 222

 Score = 70.5 bits (171), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 54/174 (31%), Positives = 84/174 (48%), Gaps = 14/174 (8%)

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
           R++   Y +++  IR   P +++SSDFI GF GET++D   T+ L+ ++ Y   F F YS
Sbjct: 37  RYSREAYVELVHHIRESIPGVSLSSDFIAGFCGETEEDHVQTVSLLREVQYNMGFLFAYS 96

Query: 369 PRLGTPGSNML-EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK 427
            R  T   + L + V E VK  RL  L    RE+    N   VG    VL+E   K    
Sbjct: 97  MRQKTRAYHRLKDDVPEEVKLRRLEELITIFREEATKANQTSVGCTQLVLVEGLSKRSAT 156

Query: 428 -LVGRSPW-LQSVVLNSKNHNI-----------GDIIKVRITDVKISTLYGELV 468
            L GR+   L+ +  +++  ++           GD + V+IT     TL G ++
Sbjct: 157 DLCGRNDGNLKVIFPDAEMEDVNNPGLRVRAQPGDYVLVKITSASSQTLRGHVL 210


>gi|298711179|emb|CBJ32403.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 254

 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 49/158 (31%), Positives = 82/158 (51%), Gaps = 6/158 (3%)

Query: 293 LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352
           +P  S    + + M R ++   Y  ++D  R+  P ++ISSDFI GF GET++D R T+ 
Sbjct: 1   MPHYSADWLLQERMGRGYSREAYLALVDHARATVPGVSISSDFISGFCGETEEDHRDTLS 60

Query: 353 LVDKIGYAQAFSFKYSPRLGTPGSNML-EQVDENVKAERLLCLQKKLREQQVSFN-DACV 410
           L++ + Y QAF + YS R  T  +  L + V   VK  RL  + +  R   ++ N +  +
Sbjct: 61  LMETVRYDQAFMYAYSLREKTRAARRLKDDVPPTVKQRRLEEVIETFRRNALAKNLEEEI 120

Query: 411 GQIIEVLIE----KHGKEKGKLVGRSPWLQSVVLNSKN 444
           G+   VL+E    +  +E  +L GR+   + VV   + 
Sbjct: 121 GKDHLVLVEGRSRRWSEEAPELTGRTDGNKRVVFPDRG 158


>gi|254448826|ref|ZP_05062282.1| 2-methylthioadenine synthetase [gamma proteobacterium HTCC5015]
 gi|198261516|gb|EDY85805.1| 2-methylthioadenine synthetase [gamma proteobacterium HTCC5015]
          Length = 167

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 82/168 (48%), Gaps = 9/168 (5%)

Query: 308 RRHTAYEYRQIIDRIRSVR---PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
           RR  A E    ++RI S R   PD+ + S FIVGFPGE++D+F   +D +++    +   
Sbjct: 2   RRPAATE--NTLERIESWRKQCPDLVLRSTFIVGFPGESEDEFEELLDFLERAQLDRVGC 59

Query: 365 FKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE 424
           FKYSP  G   + + + VDE++K +R     +K +E         VGQ   VLI++   E
Sbjct: 60  FKYSPVEGASANALPDPVDEDIKEQRYQRFMQKQQEISAQKLQRRVGQRCTVLIDEIADE 119

Query: 425 K--GKLVGRSPWLQSVV-LNSKNH-NIGDIIKVRITDVKISTLYGELV 468
              G+    +P +  +V ++   H   G  + V I +      +  LV
Sbjct: 120 GAVGRAASDAPDIDGLVFIDGATHLTPGAWVDVEIEEADEYDTWAHLV 167


>gi|207109992|ref|ZP_03244154.1| putative ATP-binding protein [Helicobacter pylori HPKX_438_CA4C1]
          Length = 114

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 34/119 (28%), Positives = 64/119 (53%), Gaps = 6/119 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + ++++ GC MN  DS  +        Y+  +    ADLI++NTC +REK   K++S +G
Sbjct: 2   KVYIETMGCAMNSRDSEHLLSELSKLDYKETSDPKTADLILINTCSVREKPERKLFSEIG 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           +   +K    K G      V GC A   G +IL+++P V+ V+G +   ++ +++ + +
Sbjct: 62  QFAKIKKPNAKIG------VCGCTASHMGADILKKAPSVSFVLGARNVSKISQVIHKEK 114


>gi|116753836|ref|YP_842954.1| radical SAM domain-containing protein [Methanosaeta thermophila PT]
 gi|116665287|gb|ABK14314.1| Radical SAM domain protein [Methanosaeta thermophila PT]
          Length = 371

 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 88/321 (27%), Positives = 136/321 (42%), Gaps = 41/321 (12%)

Query: 72  IREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ 131
           I    AE+VY  +   RN        G   + +  G    A  EE+LR    V +  G +
Sbjct: 43  IATPQAEEVYREVDAARN-------SGMKSVFIAGGPHPSARPEEVLRHFDYVVIGEGEE 95

Query: 132 TYYRLPELLERARFGK---RVVDTDYSVEDKF---ERLSIVDGGYNR----KRGVTAFLT 181
           T   LPEL++  R G+    V    Y  E +    ER   VD   +R     R + A + 
Sbjct: 96  T---LPELIDALRTGRDPGSVKGIAYMKEGELIITERRGFVD--LDRFPSFSRPLLAPIE 150

Query: 182 IQEGCDKFCTFCVVPYTRG-IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL 240
           I  GC   C +C  P   G +   RS+  ++  AR  +D     +     N  A+   GL
Sbjct: 151 ITRGCPWGCAYCQTPRLCGSVMRHRSIPSILSHARMHMD-----LRFTSPNAFAYGSDGL 205

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY-----LHLPV 295
                    LL +LSE   L R  Y  + P ++    I     L+++  Y     L +  
Sbjct: 206 KPRLERVELLLRTLSE---LGRPIYFGTFPSEVRPDFISGKA-LELITTYCTNRTLSIGG 261

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
           QSGSDRIL+ +NR H  ++     +    +  +I  + D I+  PGET++D   T++L +
Sbjct: 262 QSGSDRILRDINRGHCVHDIEMACE--ICLDHEIVPNVDLILCLPGETEEDQMLTVELAE 319

Query: 356 KIGY--AQAFSFKYSPRLGTP 374
           +I     +    ++ P  GTP
Sbjct: 320 QIVRMGGRVRVHRFMPLPGTP 340


>gi|219851947|ref|YP_002466379.1| Radical SAM domain protein [Methanosphaerula palustris E1-9c]
 gi|219546206|gb|ACL16656.1| Radical SAM domain protein [Methanosphaerula palustris E1-9c]
          Length = 360

 Score = 67.8 bits (164), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 77/284 (27%), Positives = 113/284 (39%), Gaps = 26/284 (9%)

Query: 126 VVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKF--ERLSIVDGGYNRKRGVTAFLTIQ 183
           VVVG +  + LP LL     G   + +  +  D++   R S+V   +     V  ++ I 
Sbjct: 84  VVVG-EGEHTLPSLLAAIEEGDGRIPSGVATSDEYTPARSSVVLDAFPPFSQVKGYIEIS 142

Query: 184 EGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG 242
            GC   C +C  P   G  +  RS+  VV  A +  D     +  +  N  A+   G DG
Sbjct: 143 RGCPHRCGYCQTPQIFGHCMRHRSIEAVVRAAERCRD-----VRCVTPNALAY---GSDG 194

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY-----LHLPVQS 297
                  + + L  + G V   Y  + P ++    I     LD++  Y     LH   QS
Sbjct: 195 IHPRLDKVEHLLRRLSGAV---YIGTFPSEVRPEFITPEA-LDLICTYCSNTRLHFGAQS 250

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
           GSDR+L ++ R HT     + +D  R     I    D IVG P + D+  RAT  L+  +
Sbjct: 251 GSDRVLTALGRGHTVSAVEEAVDLCREA--GITPVVDMIVGLPCDDDESERATGKLIRWV 308

Query: 358 ---GYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKL 398
              G   A  F   P      S     + E V     L L  KL
Sbjct: 309 ADRGIVHAHQFMPLPATRLANSAPRPLLPETVHMLGHLSLTGKL 352


>gi|300728187|ref|ZP_07061557.1| tRNA-I(6)A37 modification enzyme MiaB [Prevotella bryantii B14]
 gi|299774549|gb|EFI71171.1| tRNA-I(6)A37 modification enzyme MiaB [Prevotella bryantii B14]
          Length = 101

 Score = 67.8 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 34/95 (35%), Positives = 61/95 (64%), Gaps = 4/95 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F+++YGCQMNV DS  +  +    GYE  ++ D+AD I LNTC +RE A  K+++  
Sbjct: 3   KKLFIETYGCQMNVADSEVVASVMKMAGYETTDNEDEADAIFLNTCSVRENAENKIFN-- 60

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILR 119
            R+  L ++  K+G  +++ V GC+A+   E++++
Sbjct: 61  -RLETL-HAEQKKGRKVILGVLGCMAERVKEDLVQ 93


>gi|288923284|ref|ZP_06417421.1| Protein of unknown function UPF0004 [Frankia sp. EUN1f]
 gi|288345371|gb|EFC79763.1| Protein of unknown function UPF0004 [Frankia sp. EUN1f]
          Length = 298

 Score = 67.4 bits (163), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 37/103 (35%), Positives = 56/103 (54%), Gaps = 5/103 (4%)

Query: 165 IVDGGYNRKR---GVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNG 221
           ++ GG  R+R   G    L +  GCD+ C FC +P  RG  +SR   QV+ EA  L   G
Sbjct: 196 VLAGGVGRRRLTEGPVVPLKLSSGCDRRCAFCAIPSFRGSHVSRPPEQVLAEAEWLATQG 255

Query: 222 VCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
             E+ L+ +N  ++ GK L G+      LL  L+E+ G++R+R
Sbjct: 256 ARELVLVSENSTSY-GKDL-GDLRALEKLLPRLAEVPGIIRVR 296


>gi|119596730|gb|EAW76324.1| CDK5 regulatory subunit associated protein 1, isoform CRA_g [Homo
           sapiens]
          Length = 209

 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 45/126 (35%), Positives = 64/126 (50%), Gaps = 2/126 (1%)

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
           R++   Y +++  IR   P +++SSDFI GF GET++D   T+ L+ ++ Y   F F YS
Sbjct: 37  RYSREAYVELVHHIRESIPGVSLSSDFIAGFCGETEEDHVQTVSLLREVQYNMGFLFAYS 96

Query: 369 PRLGTPGSNML-EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK 427
            R  T   + L + V E VK  RL  L    RE+    N   VG    VL+E   K    
Sbjct: 97  MRQKTRAYHRLKDDVPEEVKLRRLEELITIFREEATKANQTSVGCTQLVLVEGLSKRSAT 156

Query: 428 -LVGRS 432
            L GR+
Sbjct: 157 DLCGRN 162


>gi|56800056|emb|CAI35241.1| CDK5 regulatory subunit associated protein 1-like 1 [Mus musculus]
 gi|56800205|emb|CAI35145.1| CDK5 regulatory subunit associated protein 1-like 1 [Mus musculus]
          Length = 106

 Score = 67.4 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 30/77 (38%), Positives = 50/77 (64%), Gaps = 1/77 (1%)

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
           ++++++D ++   P I I++D I GFPGETD DF+ T+ LV++  +   F  ++ PR GT
Sbjct: 3   DFKRVVDFLKEKVPGITIATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGT 62

Query: 374 PGSNMLEQVDENVKAER 390
           P +   EQV  +VK +R
Sbjct: 63  PAAKA-EQVPAHVKKQR 78


>gi|294496416|ref|YP_003542909.1| radical SAM protein [Methanohalophilus mahii DSM 5219]
 gi|292667415|gb|ADE37264.1| Radical SAM domain protein [Methanohalophilus mahii DSM 5219]
          Length = 367

 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 89/350 (25%), Positives = 145/350 (41%), Gaps = 38/350 (10%)

Query: 53  YERVNSMDDADLIVL--NTCHIREKA-AEKVYSF-LGRIRNLKNSRIKEGGDLLVVVAGC 108
           + R NS   A L  L  N   +R       VYSF   + R++         D + +  G 
Sbjct: 7   WNRKNSYSLATLYPLLENAGFVRHPVDGIMVYSFSTAQKRSIFTEVSSSNTDSVYIAGGP 66

Query: 109 VAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG---KRVVDTDYSVEDKF----- 160
                 EE L     V +  G +T   LP+L++  + G    +V    Y   D       
Sbjct: 67  HPSGSVEETLGFFDYVVIGEGEET---LPQLVDTLQMGGDVSKVAGIAYKTNDNIVHTSA 123

Query: 161 -ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLI 218
            + +++ D       G  + + I  GC   C +C  P   G ++  RS+  +V  AR   
Sbjct: 124 RQPVNLDDYPCFDCEGPRSPIEISRGCPWNCKYCQTPRLFGHKMRHRSIDSIVRYARCYN 183

Query: 219 DNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLI 278
           D     +     N  A+ G G+         LL  L++ +G  +  Y  + P ++    +
Sbjct: 184 D-----LRFTSSNAFAYGGDGIHPRLDKVEKLLACLAKFEG--KNIYFGTFPSEVRPEFV 236

Query: 279 KAHGDLDVLMPY-----LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
                L+++  Y     + L  QSGSDRIL+ + R H++ +    ++    V   I    
Sbjct: 237 SEDA-LELVNKYCTNKSISLGGQSGSDRILRQIRRGHSSEDISHAVEHC--VDKAIVPMV 293

Query: 334 DFIVGFPGETDDDFRATMDLVDKI----GYAQAFSFKYSPRLGTPGSNML 379
           DFI GFPGET++D R T+D+++ I    G  +A     +P   TP  NM+
Sbjct: 294 DFIFGFPGETEEDQRMTLDMINWIISKGGKVRAHYL--TPLPSTPYENMV 341


>gi|12835700|dbj|BAB23330.1| unnamed protein product [Mus musculus]
          Length = 230

 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 44/144 (30%), Positives = 75/144 (52%), Gaps = 7/144 (4%)

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           P I I++D I GFPGETD DF+ T+ LV++  +   F  ++ PR GTP +   EQV  +V
Sbjct: 5   PGITIATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKA-EQVPAHV 63

Query: 387 KAERLLCLQKKLREQQVSFN--DACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
           K +R   L +       S+N  D  +G+  +VL+ +   +    V  + + + V++    
Sbjct: 64  KKQRTKDLSRVFH----SYNPYDHKIGERQQVLVTEESFDSKFYVAHNRFYEQVLVPKNP 119

Query: 445 HNIGDIIKVRITDVKISTLYGELV 468
             +G +++V I +     L G+ V
Sbjct: 120 AFMGKMVEVDIYESGKHFLKGQPV 143


>gi|45357610|ref|NP_987167.1| radical SAM domain-containing protein [Methanococcus maripaludis
           S2]
 gi|45047170|emb|CAF29603.1| conserved hypothetical protein [Methanococcus maripaludis S2]
          Length = 369

 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 94/369 (25%), Positives = 157/369 (42%), Gaps = 48/369 (13%)

Query: 48  FFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAG 107
            F +  E + ++D  D+++ +   ++EK   +V S +  ++ LK        D++++  G
Sbjct: 25  LFKEFGEIIENLDSLDILIYSFMSMQEK---EVLSEINELKKLKK-------DVILIAGG 74

Query: 108 CVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVD 167
                  E+ L      +V+VG +    LP L+   + GK       + E   +   I +
Sbjct: 75  AHPSGCPEDTLNLG-FDHVIVG-EGEISLPNLINSIKSGK-------TPEKIIKGKPIEN 125

Query: 168 GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDNGVCEIT 226
                K    A + I  GC   C FC  P   G  I  RS+  +V   + + D     I 
Sbjct: 126 FDDYEKIWPLAPIEITRGCPYNCRFCQTPQIFGKNIRHRSIESIVKIVKTMGD-----IR 180

Query: 227 LLGQNVNAWRGK-GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLD 285
            +  N  ++  K G   +      L+ SL EIK   RL + T  P ++    +     LD
Sbjct: 181 FVTPNAFSYGSKTGTKPDIEKLEKLMKSLFEIKK--RLFFGT-FPSEVRPEFVNFE-TLD 236

Query: 286 VLMPY-----LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP-DIAISSDFIVGF 339
           ++  Y     +H   QSGSD +LK + R H   +   +I+ + + +  D+    DFI GF
Sbjct: 237 LVNKYCDNRYIHFGAQSGSDEVLKHIRRGHLVSD---VINAVETSKECDLIPKVDFIFGF 293

Query: 340 PGETDDDFRATMDL----VDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQ 395
           P ETDD  + ++DL    + K G   A  F   P  GT   N      E ++ E L  L 
Sbjct: 294 PDETDDQRKESIDLMKYIIKKNGKVHAHYF--MPLCGTYFEN---STPELLEKETLDILG 348

Query: 396 KKLREQQVS 404
           K  ++ Q++
Sbjct: 349 KMAKKGQIT 357


>gi|145641844|ref|ZP_01797419.1| lipoyl synthase [Haemophilus influenzae R3021]
 gi|145273466|gb|EDK13337.1| lipoyl synthase [Haemophilus influenzae 22.4-21]
          Length = 143

 Score = 67.0 bits (162), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 39/108 (36%), Positives = 61/108 (56%), Gaps = 1/108 (0%)

Query: 362 AFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKH 421
           +FSF YS R GTP ++M + V E+ K +RL  LQ+++ +Q   F+   +G    VL+E  
Sbjct: 2   SFSFVYSARPGTPAADMPDDVTEDEKKQRLYVLQERINQQAAQFSRRMLGTEQRVLVEGP 61

Query: 422 GKEK-GKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            K+   +L GR+   + V        IG  + V+ITDV  ++L GE+V
Sbjct: 62  SKKDIMELTGRTETNRIVNFQGSPEMIGKFVDVKITDVYTNSLRGEVV 109


>gi|207092685|ref|ZP_03240472.1| putative ATP-binding protein [Helicobacter pylori HPKX_438_AG0C1]
          Length = 102

 Score = 66.6 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 34/106 (32%), Positives = 57/106 (53%), Gaps = 6/106 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + ++++ GC MN  DS  +        Y+  +    ADLI++NTC +REK   K++S +G
Sbjct: 2   KVYIETMGCAMNSRDSEHLLSELSKLDYKETSDPKTADLILINTCSVREKPERKLFSEIG 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ 131
           +   +K    K G      V GC A   G +IL+++P V+ V+G +
Sbjct: 62  QFAKIKKPNAKIG------VCGCTASHMGADILKKAPSVSFVLGAR 101


>gi|15669056|ref|NP_247860.1| hypothetical protein MJ_0865 [Methanocaldococcus jannaschii DSM
           2661]
 gi|2501542|sp|Q58275|Y865_METJA RecName: Full=Putative methylthiotransferase MJ0865
 gi|1591549|gb|AAB98870.1| conserved hypothetical protein [Methanocaldococcus jannaschii DSM
           2661]
          Length = 449

 Score = 66.6 bits (161), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 84/345 (24%), Positives = 155/345 (44%), Gaps = 40/345 (11%)

Query: 32  YGCQMNVYDSLRMEDMFFSQGY--ERVNSMDD-----ADLIVLN---TCHIREKAAEKVY 81
           Y  ++  Y ++ +  +   +GY    V  +D      +D+I+ +   T HI +K   +  
Sbjct: 15  YSPEVYTYGAMLIGGILKHKGYNVHLVRKIDKTLFLKSDVIIFSLYSTLHILDKNIREAI 74

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
            F+ ++R  K           V VAGCV+    E IL    +  V+VG +     P+++E
Sbjct: 75  DFIKKVRKNKTK---------VYVAGCVSTYP-EIILNELNVDGVIVG-EGEITTPKIIE 123

Query: 142 RARFG-------KRVVDTDYSVEDKFERLSIVDGGYNRK--RGVTAFLTIQEGCDKFCTF 192
             + G       + V++      D    L ++     ++  RG   ++    GC   CTF
Sbjct: 124 GDKEGLAYKEGDEIVINYPKEKPDLNHPLPLIPKDIEQQSIRGANVYIETHRGCLGNCTF 183

Query: 193 CVVPYTRGIEI-SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR-GKGLDGEKCTFSDL 250
           C VP   G  I SR +  VV+E +     G   I + G   + +   K ++ +K  F +L
Sbjct: 184 CQVPKFFGKTIRSRDVEDVVEEVKAFKRAGAKRIAISGGTGSLYAFKKSINRDK--FFEL 241

Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
           L  +SE+ G   L         + + +++A  +  +   ++   ++SGSD+ILK M ++ 
Sbjct: 242 LEKVSEVIGKNNLSVPDMRVDYVDEEILEAIKNYTI--GWVFYGIESGSDKILKDM-KKG 298

Query: 311 TAYEYRQIIDRIRSVRP-DIAISSDFIVGFPGETDDDFRATMDLV 354
           T  E  + +D I+  +   + ++  FIV +P ET+ D+  T D +
Sbjct: 299 TNRE--KNLDAIKLAKDCGVKVAGSFIVAYPTETEMDYLLTKDFI 341


>gi|288923283|ref|ZP_06417420.1| 2-methylthioadenine synthetase-like protein [Frankia sp. EUN1f]
 gi|288345370|gb|EFC79762.1| 2-methylthioadenine synthetase-like protein [Frankia sp. EUN1f]
          Length = 257

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 65/134 (48%)

Query: 287 LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDD 346
           L PYL L  Q  S  +L+ M R     ++  ++ R R +  D+   S+ IVGFPGET++D
Sbjct: 7   LAPYLDLSFQHASPAVLRRMRRFGGTDDFLDLLRRARGLLGDLGARSNVIVGFPGETEED 66

Query: 347 FRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFN 406
               MD +++        F YS   GT  + M   VD +    R + +   + +   +  
Sbjct: 67  VDILMDFLERADLDAVGVFGYSDEEGTEAAGMDGHVDPDEIERRRVDVTNLVEQLTAARA 126

Query: 407 DACVGQIIEVLIEK 420
           +  VG  +EVL+E+
Sbjct: 127 ERRVGTTVEVLVEE 140


>gi|330720035|gb|EGG98468.1| tRNA-i(6)A37 methylthiotransferase [gamma proteobacterium IMCC2047]
          Length = 126

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 38/119 (31%), Positives = 67/119 (56%), Gaps = 2/119 (1%)

Query: 351 MDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACV 410
           M L++ IGY  +FSF YS R GTP + + ++  E VK +RL  LQ ++ +Q ++ +++ V
Sbjct: 1   MKLIETIGYDLSFSFIYSARPGTPAAELEDETPEEVKKQRLHILQTRITQQAMAISESMV 60

Query: 411 GQIIEVL-IEKHGKEKGKLVGRSPWLQSVVLNSKNHNI-GDIIKVRITDVKISTLYGEL 467
           G +   L I    K+  KL GR+   + V+ + +   + G  + V IT+   +++ G L
Sbjct: 61  GSVQRTLVIGPSKKDPAKLQGRTENNRVVIFDPQGAQLEGKFVDVTITEALPNSMRGTL 119


>gi|150402967|ref|YP_001330261.1| radical SAM domain-containing protein [Methanococcus maripaludis
           C7]
 gi|150033997|gb|ABR66110.1| Radical SAM domain protein [Methanococcus maripaludis C7]
          Length = 369

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 89/369 (24%), Positives = 159/369 (43%), Gaps = 48/369 (13%)

Query: 48  FFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAG 107
            F +  E + ++D  ++++ +   ++EK        L  I  LK  ++K+  D++++  G
Sbjct: 25  LFKEFSEIIENLDSLEILIYSFMSMQEKEV------LNEINELK--KLKK--DVILIAGG 74

Query: 108 CVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVD 167
                  E+ L      ++++G +    LP L+   + GK       S+E   + + I +
Sbjct: 75  PHPSGCPEDTLNMG-FDHIIIG-EGEISLPNLINSIKSGK-------SLEKIIKGIPIEN 125

Query: 168 GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDNGVCEIT 226
                K    A + I  GC   C FC  P   G  I  RS+  +V   + + D     I 
Sbjct: 126 FDNYEKIWPLAPIEITRGCPYNCRFCQTPQIFGKNIRHRSIESIVKIVKTMGD-----IR 180

Query: 227 LLGQNVNAWRGK-GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLD 285
            +  N  ++  K G   +      L+ SL EIK   RL + T  P ++    +     LD
Sbjct: 181 FVTPNAFSYGSKTGTKPDIEKLEKLMKSLFEIKK--RLFFGT-FPSEVRPEFV-TFETLD 236

Query: 286 VLMPY-----LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP-DIAISSDFIVGF 339
           ++  Y     +H   QSGSD +LK++ R H   +   +I+ + + +  D+    DFI GF
Sbjct: 237 LVNKYCDNRYIHFGAQSGSDEVLKNIRRGHLVSD---VINAVETSKDCDLIPKVDFIFGF 293

Query: 340 PGETDDDFRATMDL----VDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQ 395
           P ET++  + T+DL    + K G   A  F     +   G+       E ++ E L  L 
Sbjct: 294 PNETENQRKETIDLMKYIIKKNGKVHAHYF-----MSLCGTYFENSTPEPLEKEILDTLG 348

Query: 396 KKLREQQVS 404
           K  ++ Q++
Sbjct: 349 KMAKKGQIT 357


>gi|150399412|ref|YP_001323179.1| radical SAM domain-containing protein [Methanococcus vannielii SB]
 gi|150012115|gb|ABR54567.1| Radical SAM domain protein [Methanococcus vannielii SB]
          Length = 438

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 77/290 (26%), Positives = 134/290 (46%), Gaps = 24/290 (8%)

Query: 80  VYSFLGRI-RNLKNS--RIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL 136
           +YS L  +  N+KN+   IK+ G   V VAG V+ A  E IL    +  V++G +     
Sbjct: 52  LYSTLNILDENIKNTIELIKKSGKTRVYVAGPVS-AYPEIILNELNLDGVILG-EGELTT 109

Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVDGG--YNRK-------RGVTAFLTIQEGCD 187
           PE++   + G      D  +++  E+   +D    Y  K       RG   ++    GC 
Sbjct: 110 PEIILGGKNGLAYFKNDEIIKNNVEKKPELDFSKIYIPKDIEKQTVRGANIYMETHRGCL 169

Query: 188 KFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT 246
             CTFC VP   G +I S+ L  +++E + L   GV  I + G   + +  K     +  
Sbjct: 170 GHCTFCQVPEFFGRDIRSKPLELILNEVKALKRRGVNRIAISGGTGSLYNFKN-SLNRDN 228

Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306
           F +++ S+SEI G   L         + + ++ A  D  +   ++   ++SGS+ +LK M
Sbjct: 229 FIEMVKSVSEIIGKENLSIPDMRVDYIDEEILCAIRDYSI--GWVFYGIESGSNELLKKM 286

Query: 307 NR-RHTAYEYRQIIDRIRSVRP-DIAISSDFIVGFPGETDDDFRATMDLV 354
            +  +TA   R     I++ +   + ++  FIVG P E++ D+  T D +
Sbjct: 287 KKGTNTAKNLRA----IKTAKECGVKVAGSFIVGHPDESEYDYLLTKDFI 332


>gi|288926973|ref|ZP_06420869.1| LOW QUALITY PROTEIN: 2-methylthioadenine synthetase [Prevotella
           buccae D17]
 gi|288336256|gb|EFC74641.1| LOW QUALITY PROTEIN: 2-methylthioadenine synthetase [Prevotella
           buccae D17]
          Length = 144

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/145 (35%), Positives = 70/145 (48%), Gaps = 10/145 (6%)

Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE-QVDENVKAE 389
           I +  +VGFPGET+DDFR  +D V +  + +  +F YS   GT  +   E  V  +VK  
Sbjct: 2   IRTTLLVGFPGETEDDFRQLVDFVREARFERMGAFAYSEEEGTYSAEHYEDDVPADVKQR 61

Query: 390 RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVVL---NS 442
           RL  L    +E         VGQ++ V+I++  KE    VGR    SP +   VL     
Sbjct: 62  RLDELMAVQQEISAEIEAGKVGQVMPVIIDR--KEGNYYVGRTEFCSPEVDPEVLIPAGR 119

Query: 443 KNHNIGDIIKVRITDVKISTLYGEL 467
           K    G    V+I D +   LYGEL
Sbjct: 120 KRLRTGCFYNVKIVDSEEFDLYGEL 144


>gi|159905706|ref|YP_001549368.1| radical SAM domain-containing protein [Methanococcus maripaludis
           C6]
 gi|159887199|gb|ABX02136.1| Radical SAM domain protein [Methanococcus maripaludis C6]
          Length = 441

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/182 (25%), Positives = 88/182 (48%), Gaps = 6/182 (3%)

Query: 174 RGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDNGVCEITLLGQNV 232
           RG   ++    GC   CTFC VP   G +I S+ +  +++E ++L  NGV  I + G   
Sbjct: 159 RGANVYIETHRGCLGHCTFCQVPEFFGRDIRSKPIELIIEEVKELKKNGVKRIAISGGTG 218

Query: 233 NAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLH 292
           + +  K     K  F +++ S+S + G   L         + + ++ A  +  +   ++ 
Sbjct: 219 SLYNFKNT-VNKNKFVEMIESVSNMIGRQNLSVPDMRVDYVDEEVLNAIKNYSI--GWVF 275

Query: 293 LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352
             ++SGSDR+L SM +   + +  + I+  ++    + ++  FIVG P E + DF  T D
Sbjct: 276 YGIESGSDRLLNSMKKGTNSKKNLRAIELAKNC--GVKVAGSFIVGHPKEKEVDFLMTKD 333

Query: 353 LV 354
            +
Sbjct: 334 FI 335


>gi|167947811|ref|ZP_02534885.1| hypothetical protein Epers_15217 [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 213

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/120 (35%), Positives = 63/120 (52%), Gaps = 6/120 (5%)

Query: 178 AFLTIQEGCDKFCTFCVVPYTRGIEISRSL-SQVVDEARKLIDNGVCEITLLGQNVNAWR 236
           AF+ +Q+GC   CTFC+V   RG E SR    +V+ E  +L   G+ E+ L G ++  + 
Sbjct: 76  AFIKVQDGCRYRCTFCIVTLARGEERSRPADEEVIAEINRLHSEGIQEVVLTGVHLGGY- 134

Query: 237 GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQ 296
           G  +D +     D + + SEI    RLR  +  P D+ D    +  D    MP+LHLP+Q
Sbjct: 135 GSDIDSDLGQLIDRVLADSEIP---RLRVGSLEPWDLPDNFW-SRFDNPRFMPHLHLPLQ 190


>gi|296108791|ref|YP_003615740.1| Radical SAM domain protein [Methanocaldococcus infernus ME]
 gi|295433605|gb|ADG12776.1| Radical SAM domain protein [Methanocaldococcus infernus ME]
          Length = 437

 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 81/309 (26%), Positives = 142/309 (45%), Gaps = 36/309 (11%)

Query: 62  ADLIVLN---TCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEIL 118
           +D+I+ +   T HI +    ++ +F+ R     N + K      + VAGC++    E IL
Sbjct: 42  SDVIIFSLYSTLHIIDNKIRELINFIKR----ANKKAK------LYVAGCISTYP-EIIL 90

Query: 119 RRSPIVNVVVGPQTYYRLPELLE------RARFGKRVVDTDYSVE----DKFERLSIVDG 168
               +  V++G +     P +LE        R G  ++  +Y  E    D    L   D 
Sbjct: 91  NELNVDGVIIG-EGEITTPRILEGDEEGLAYREGDNII-VNYPKEKPSLDHPLPLIPKDI 148

Query: 169 GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDNGVCEITL 227
           G    RG   ++    GC   CTFC VP   G EI SR +  VV+E ++    G   I +
Sbjct: 149 GEQNIRGANVYIETHRGCLGNCTFCQVPKFFGKEIRSRDVELVVEEVKEFKKRGAKRIAI 208

Query: 228 LGQNVNAWR-GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV 286
            G   + +   K ++ EK  F +LL  LS I G   L         + + +++A  +  +
Sbjct: 209 SGGTGSLYNFKKSVNREK--FYELLEKLSSIVGKSNLSVPDMRVDYVDEAILEAIKNYTI 266

Query: 287 LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP-DIAISSDFIVGFPGETDD 345
              ++   ++SGSD++L+ M +       ++I+D I+  +  ++ ++  FIVG+P ET+ 
Sbjct: 267 --GWVFYGIESGSDKVLRDMKK---GVNTKKIMDAIKLAKDLNVKVAGSFIVGYPTETEK 321

Query: 346 DFRATMDLV 354
           D+  T D +
Sbjct: 322 DYLLTKDFI 330


>gi|167465799|ref|ZP_02330888.1| YmcB [Paenibacillus larvae subsp. larvae BRL-230010]
          Length = 125

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 43/70 (61%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + + +++YGCQMN +D+  M+ +    GY        AD+I+LNTC IRE A +KV+  L
Sbjct: 50  KHYLIRTYGCQMNEHDTETMKGLLEQMGYRSTEDKYQADVILLNTCAIRENAEDKVFGEL 109

Query: 85  GRIRNLKNSR 94
           G ++ LK  +
Sbjct: 110 GHLKTLKTEK 119


>gi|315229966|ref|YP_004070402.1| hypothetical protein TERMP_00202 [Thermococcus barophilus MP]
 gi|315182994|gb|ADT83179.1| hypothetical protein TERMP_00202 [Thermococcus barophilus MP]
          Length = 424

 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 100/212 (47%), Gaps = 22/212 (10%)

Query: 176 VTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDNGVCEITLLGQNVNA 234
           + A + I  GC   C +C  PY +G ++  R + Q+V  ++++ D     +  +  N  A
Sbjct: 164 LIAPIEISRGCPFGCYYCQTPYIKGFKMRHRPIDQIVKYSKRMRD-----MRYITPNAFA 218

Query: 235 WRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY---- 290
           +   G   +      LL +L  ++   R  +  + P ++    +K    L++L+ Y    
Sbjct: 219 YGSPGAILKLDKLEALLKALQPLRKEGRRLFYGTFPSEVRPEFVKPE-TLELLIKYADNR 277

Query: 291 -LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR-SVRPDIAISSDFIVGFPGETDDDFR 348
            L +  QSG D +LK+M+R HT    R +++ +   +   I    DFIVG P E+++  R
Sbjct: 278 RLAIGAQSGDDVMLKAMHRLHTV---RYVMEAVEYMIEYGIEPVVDFIVGLPNESEESQR 334

Query: 349 ATMDLVDKI----GYAQAFSFKYSPRLGTPGS 376
            +++L+  I    G  +A  F   P  GTP +
Sbjct: 335 KSIELMKWIMRKGGKVRAHYF--MPLPGTPWA 364


>gi|45358913|ref|NP_988470.1| radical SAM domain-containing protein [Methanococcus maripaludis
           S2]
 gi|45047779|emb|CAF30906.1| conserved hypothetical protein [Methanococcus maripaludis S2]
          Length = 437

 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 65/265 (24%), Positives = 122/265 (46%), Gaps = 17/265 (6%)

Query: 100 DLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR-------FGKRVVDT 152
           ++ + VAG V+ A  E IL    +  V++G +     PE++  ++        G+ +V+ 
Sbjct: 74  NIKIYVAGPVS-AYPEIILNELNVDGVILG-EGELTTPEIINGSKDGLAYFENGEMIVNK 131

Query: 153 DYSVED-KFERLSIV-DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQ 209
             S  D  F ++ +  D      RG   ++    GC   CTFC VP   G +I S+ +  
Sbjct: 132 PKSKPDLDFSKIYVPKDIAAQNVRGANVYIETHRGCLGHCTFCQVPEFFGRDIRSKPIEL 191

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSH 269
           +++E  +L  NGV  I + G   + +  K     K  F +++ S+S I G   L      
Sbjct: 192 IIEEVNELKKNGVNRIAISGGTGSLYNFKNT-VNKNKFIEMIESVSNIIGRQNLSVPDMR 250

Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329
              + + ++ A  +  +   ++   ++SGSD++L SM +   + +  + I+  +     +
Sbjct: 251 VDYVDEEVLNAIKNYSI--GWVFYGIESGSDKLLNSMKKGTNSKKNLKAIELAKDC--GV 306

Query: 330 AISSDFIVGFPGETDDDFRATMDLV 354
            ++  FIVG P E + DF  T D +
Sbjct: 307 KVAGSFIVGHPKEKEVDFLMTKDFI 331


>gi|217077399|ref|YP_002335117.1| Fe-S oxidoreductase family protein [Thermosipho africanus TCF52B]
 gi|217037254|gb|ACJ75776.1| Fe-S oxidoreductase family protein [Thermosipho africanus TCF52B]
          Length = 376

 Score = 63.9 bits (154), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 53/208 (25%), Positives = 95/208 (45%), Gaps = 13/208 (6%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK 238
           + I  GC   C +C  P   G  +  R + Q+V+ ++  ++N       +  N   +  K
Sbjct: 128 IEITRGCPFSCGYCQTPRLAGKLVRHRPIEQIVEYSKIGVENNRKIARFISPNSFGYGSK 187

Query: 239 -GLDGEKCTFSDLLYSLSEIKGLVRLRYTT----SHPRDMSDCLIKAHGDLDVLMPYLHL 293
            G+         LLY+L ++ G+  + + T      P  +++ ++K      V   Y+ +
Sbjct: 188 NGVTPNPEAVDTLLYNLKKV-GVEEIYFGTFPSDVRPESVNEEILKVIKKY-VNNKYIVI 245

Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
             QSGS+R+L+ + R H   E  + +  ++    D     DFI GFP ETD+D   T + 
Sbjct: 246 GAQSGSERVLEMIKRGHNLEEIERALSLLKEY--DFIPRVDFIFGFPFETDEDIEKTFEF 303

Query: 354 VDKI---GYAQAFSFKYSPRLGTPGSNM 378
           + KI     A+  +  + P  GTP +N+
Sbjct: 304 IKKIVNKYKAKVHAHTFMPLPGTPLANI 331


>gi|134045273|ref|YP_001096759.1| radical SAM domain-containing protein [Methanococcus maripaludis
           C5]
 gi|132662898|gb|ABO34544.1| Radical SAM domain protein [Methanococcus maripaludis C5]
          Length = 441

 Score = 63.5 bits (153), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 47/182 (25%), Positives = 86/182 (47%), Gaps = 6/182 (3%)

Query: 174 RGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDNGVCEITLLGQNV 232
           RG   ++    GC   CTFC VP   G +I S+ +  +++E ++L  NGV  I + G   
Sbjct: 159 RGANVYIETHRGCLGHCTFCQVPEFFGRDIRSKPIELIIEEVKELKKNGVKRIAISGGTG 218

Query: 233 NAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLH 292
           + +  K     K  F +++ S+S I G   L         + + ++ A  +  +   ++ 
Sbjct: 219 SLYNFKNT-VNKNKFIEMIESVSNIIGRGNLSVPDMRVDYVDEEVLNAIKNYSI--GWVF 275

Query: 293 LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352
             ++SGSD++L SM +     +  + I+  +     + ++  FIVG P E + DF  T D
Sbjct: 276 YGIESGSDKLLNSMKKGTNTKKNLKAIELAKDC--GVKVAGSFIVGHPKEKEVDFLMTKD 333

Query: 353 LV 354
            +
Sbjct: 334 FI 335


>gi|153005269|ref|YP_001379594.1| radical SAM domain-containing protein [Anaeromyxobacter sp.
           Fw109-5]
 gi|152028842|gb|ABS26610.1| Radical SAM domain protein [Anaeromyxobacter sp. Fw109-5]
          Length = 495

 Score = 63.5 bits (153), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 64/219 (29%), Positives = 94/219 (42%), Gaps = 14/219 (6%)

Query: 180 LTIQEGCDKFCTFCVVPYT-RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK 238
           L +  GC   C FC  P+  R     RSL  +   AR L      ++ +L  +  +W   
Sbjct: 251 LEVTRGCAWACRFCQTPFLFRARFRHRSLESIRRWARHLAALETRDLRVLTPSALSWGSP 310

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY-----LHL 293
               +      LL +L E  G  R  +  S P ++    + A   L +L  Y     L +
Sbjct: 311 DGGCDLAAIEALLATLREAIGPDRRLFVGSFPSELRPEHVSAEA-LALLRRYCDNRTLVI 369

Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDD---FRAT 350
             QSGSDR+L SM R H A    +   R+ ++      S DFI G PGET+DD    R  
Sbjct: 370 GGQSGSDRLLVSMRRGHDAESVTRAA-RL-ALEAGFTPSVDFIFGLPGETEDDRIATRGQ 427

Query: 351 MDLVDKIGYAQAFSFKYSPRLGTP-GSNMLEQVDENVKA 388
           M  +  +G A+  +  + P  GTP G     ++D   +A
Sbjct: 428 MQGLAAMG-ARVHAHAFMPLPGTPWGGAAPGRIDGTTRA 465


>gi|150020941|ref|YP_001306295.1| radical SAM domain-containing protein [Thermosipho melanesiensis
           BI429]
 gi|149793462|gb|ABR30910.1| Radical SAM domain protein [Thermosipho melanesiensis BI429]
          Length = 398

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 60/211 (28%), Positives = 93/211 (44%), Gaps = 19/211 (9%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK 238
           + I  GC   C +C  P   G  I  R + Q+V+  +  +  G      +  N   +  K
Sbjct: 150 IEITRGCPFSCGYCQTPRLAGKLIRHRPVEQIVEYTKIGVQKGRKIARFISPNSFGYGSK 209

Query: 239 -GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLH----- 292
            G+        +LLYSL  +   V   Y  + P D+    +     L V+  Y++     
Sbjct: 210 NGVIPNVEVVENLLYSLKGVG--VEEIYFGTFPSDVRPESVNRE-ILRVIKKYVNNRYIV 266

Query: 293 LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS--DFIVGFPGETDDDFRAT 350
           +  QSGS+R+LK +NR H   E    I+R  S+  +       DFI GFP ETD+D   T
Sbjct: 267 IGAQSGSERVLKKINRGHNLEE----IERALSLLVEFGFIPRVDFIFGFPFETDEDIENT 322

Query: 351 MDLVDKI---GYAQAFSFKYSPRLGTPGSNM 378
            + + KI     A+  +  + P  GTP +N+
Sbjct: 323 FEFIKKIVNKYKAKVHAHTFMPLPGTPLANV 353


>gi|74203559|dbj|BAE23052.1| unnamed protein product [Mus musculus]
 gi|123228757|emb|CAM15625.1| CDK5 regulatory subunit associated protein 1 [Mus musculus]
          Length = 190

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 52/83 (62%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ ++++YGCQMNV D+     +    GY R +++ +AD+I+L TC IREKA + +++ L
Sbjct: 99  RKVYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCSIREKAEQTIWNRL 158

Query: 85  GRIRNLKNSRIKEGGDLLVVVAG 107
            +++ LK  R +    L + + G
Sbjct: 159 HQLKVLKTKRPRSRVPLRIGILG 181


>gi|18978095|ref|NP_579452.1| hypothetical protein PF1723 [Pyrococcus furiosus DSM 3638]
 gi|18893890|gb|AAL81847.1| hypothetical protein PF1723 [Pyrococcus furiosus DSM 3638]
          Length = 425

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 57/211 (27%), Positives = 99/211 (46%), Gaps = 26/211 (12%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK 238
           + I  GC   C +C  PY +G  +  R + Q+V  ++++ D     +  +  N  A+   
Sbjct: 169 MEISRGCPFGCYYCQTPYAKGFRMRHRPIDQIVKYSKRMKD-----MRYITPNAFAYGSP 223

Query: 239 G--LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY-----L 291
           G  L  EK     LL +L  ++   R  +  + P ++    +     +++L+ Y     L
Sbjct: 224 GGILKIEKV--EALLRALQPLRREGRRLFYGTFPSEVRPEFV-TRETVELLVKYTDTKRL 280

Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR-SVRPDIAISSDFIVGFPGETDDDFRAT 350
            +  QSG D++LK+M+R H       +I+ +  S+   I    DFIVG PGET++  R +
Sbjct: 281 AIGAQSGDDKMLKAMHRVHRV---EHVINAVELSLEYGITPVVDFIVGLPGETEEMQRKS 337

Query: 351 MDL----VDKIGYAQAFSFKYSPRLGTPGSN 377
           ++L    + K G  +A  F   P  GTP + 
Sbjct: 338 IELMKWIIKKGGKVRAHYF--MPLPGTPWAK 366


>gi|302806399|ref|XP_002984949.1| hypothetical protein SELMODRAFT_8473 [Selaginella moellendorffii]
 gi|302825388|ref|XP_002994314.1| hypothetical protein SELMODRAFT_8472 [Selaginella moellendorffii]
 gi|300137801|gb|EFJ04620.1| hypothetical protein SELMODRAFT_8472 [Selaginella moellendorffii]
 gi|300147159|gb|EFJ13824.1| hypothetical protein SELMODRAFT_8473 [Selaginella moellendorffii]
          Length = 89

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/92 (33%), Positives = 51/92 (55%), Gaps = 10/92 (10%)

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
           E+R+I+D +  + P+I I++D I GFPGET +DF   M+L+ +  + Q    ++ PR GT
Sbjct: 2   EFRKIVDTLTRLVPEIHIATDIICGFPGETSEDFDRIMELIREYTFPQVHISQFYPRPGT 61

Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSF 405
           P + M          +R+  L+ K R   + F
Sbjct: 62  PAALM----------KRVPTLEVKKRSHSILF 83


>gi|147921089|ref|YP_685100.1| redox-active protein [uncultured methanogenic archaeon RC-I]
 gi|110620496|emb|CAJ35774.1| predicted redox-active protein (CxxC motif) [uncultured
           methanogenic archaeon RC-I]
          Length = 366

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 81/291 (27%), Positives = 118/291 (40%), Gaps = 48/291 (16%)

Query: 126 VVVGPQTYYRLPELLERARFGKRVV---------DTDYSVEDKFERLSIVDGGYNRKRGV 176
           VVVG +    LPELL   R G  V          D  Y    K E + + D     K  +
Sbjct: 82  VVVG-EGEATLPELLSTIRAGGDVSKVRGIAYLQDGHYCYTGKREDVDL-DAYPPFKPPL 139

Query: 177 TAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDNGVCEITLLGQNVNAW 235
              + I  GC   C +C  P   G  +  RS+  +    +   D       L+  N  A+
Sbjct: 140 YGPIEISRGCPWNCAYCQTPRLFGHRMRHRSVESICKYDKYYEDK-----RLVSPNAFAY 194

Query: 236 RGKGLDGEKCTFSDLLYSLS------EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMP 289
              G+         LL +LS           VR  + T    DM   +     + +    
Sbjct: 195 GSDGITPNPAAVEKLLKNLSGNIYFGTFPSEVRPEFVTP---DMVSLVTTYCANKE---- 247

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS--DFIVGFPGETDDDF 347
            LHL  QSGSDR+LK+++R HTA    Q++   R+++ D  ++   DFI G PGE  +D 
Sbjct: 248 -LHLGGQSGSDRVLKAIHRGHTA---EQVVTAARTIK-DAGLTPVVDFIFGLPGENKEDQ 302

Query: 348 RATMDLVDKI----GYAQAFSFKYSPRLGTPGSNMLEQVDENVKAE--RLL 392
            AT++ +  I    G  +A  F     L  PG+ +      +V  E  RLL
Sbjct: 303 TATLENIRAIIREGGKIRAHYF-----LPLPGTELAGTTPASVDPEIDRLL 348


>gi|134046659|ref|YP_001098144.1| radical SAM domain-containing protein [Methanococcus maripaludis
           C5]
 gi|132664284|gb|ABO35930.1| Radical SAM domain protein [Methanococcus maripaludis C5]
          Length = 369

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 88/372 (23%), Positives = 151/372 (40%), Gaps = 54/372 (14%)

Query: 48  FFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAG 107
            F +  E + ++D  ++++ +   ++EK   +V + +  ++ LK        D++++  G
Sbjct: 25  LFKEFNEIIENLDSLEIVIYSFMSMQEK---EVLNEINELKKLKR-------DIILIAGG 74

Query: 108 CVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVD 167
                  E+ L      +V++G +    LP L+   + GK       + E   + + I +
Sbjct: 75  PHPSGCPEDTLNMG-FDHVIIG-EGEISLPNLINSIKSGK-------TPEKIIKGIPIEN 125

Query: 168 GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDNGVCEIT 226
                K    A + I  GC   C FC  P   G  I  RS+  +V   + + D     I 
Sbjct: 126 FEDYEKIWPLAPIEITRGCPYNCRFCQTPQIFGKNIRHRSIESIVKIVKTMGD-----IR 180

Query: 227 LLGQNVNAWRGK-GLDGEKCTFSDLLYSLSEIK---------GLVRLRYTTSHPRDMSDC 276
            +  N  ++  K G          L+  L EIK           VR  + TS   D    
Sbjct: 181 FVTPNAFSYGSKTGTKPNIEKLEKLMKHLFEIKKRLFFGTFPSEVRPEFVTSETLD---- 236

Query: 277 LIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFI 336
           LI  + D      Y+H   QSGSD +LK + R HT  +    ++   S + D+    DFI
Sbjct: 237 LINKYCDNR----YIHFGAQSGSDEVLKHIRRGHTVSDVINAVE--TSKKCDLIPKVDFI 290

Query: 337 VGFPGETDDDFRATMDL----VDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLL 392
            GFP ET+   + ++DL    + K G   A  F     +   G+       E ++ E L 
Sbjct: 291 FGFPNETEIQRKESIDLMKYIIKKNGKVHAHYF-----MSLCGTYFENSTPEPLEKEILD 345

Query: 393 CLQKKLREQQVS 404
            L K  ++ Q++
Sbjct: 346 ILGKMAKKGQIT 357


>gi|238762862|ref|ZP_04623830.1| hypothetical protein ykris0001_31720 [Yersinia kristensenii ATCC
           33638]
 gi|238698873|gb|EEP91622.1| hypothetical protein ykris0001_31720 [Yersinia kristensenii ATCC
           33638]
          Length = 86

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/66 (51%), Positives = 43/66 (65%), Gaps = 3/66 (4%)

Query: 36  MNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSR 94
           MN YDS +M D+  S  GY+     ++ADL++LNTC IREKA EKV+S LG  + LK  R
Sbjct: 1   MNEYDSSKMADLLASTHGYQLTEIPEEADLLLLNTCSIREKAQEKVFSLLGHWKLLK--R 58

Query: 95  IKEGGD 100
            K G D
Sbjct: 59  KKSGTD 64


>gi|154249715|ref|YP_001410540.1| radical SAM domain-containing protein [Fervidobacterium nodosum
           Rt17-B1]
 gi|154153651|gb|ABS60883.1| Radical SAM domain protein [Fervidobacterium nodosum Rt17-B1]
          Length = 393

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 56/211 (26%), Positives = 94/211 (44%), Gaps = 19/211 (9%)

Query: 180 LTIQEGCDKFCTFCVVPYTRG-IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK 238
           L I  GC   C +C  P   G I   RS+ Q+V+  +  +  G      +  N   +  K
Sbjct: 148 LEISRGCPFNCGYCQTPRLAGKIVRHRSIEQIVEYEKISVKYGKTIARFITPNAFGYGSK 207

Query: 239 -GLDGEKCTFSDLLYSLSEIKGLVRLRYTT----SHPRDMSD---CLIKAHGDLDVLMPY 290
            G+        +LLY + +  G+  + + T      P  ++D    +IK + + D    Y
Sbjct: 208 NGVTPNLEAIDELLYKV-KATGVTEIYFGTFPSDVRPESVTDEVLKIIKKYVNHD----Y 262

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
           + +  QSGS+RIL+ + R HT  +  + ++ +   +       DFI GFP ET +D   T
Sbjct: 263 IVIGAQSGSNRILEKIQRGHTVEKVEEALEIL--AQNGFYAKVDFIFGFPFETKEDVEET 320

Query: 351 MDLVDKI---GYAQAFSFKYSPRLGTPGSNM 378
              ++KI     A+  +  + P  GTP  N+
Sbjct: 321 FKFIEKIVKKYNAKIHAHTFMPLPGTPLWNV 351


>gi|302812392|ref|XP_002987883.1| hypothetical protein SELMODRAFT_8459 [Selaginella moellendorffii]
 gi|302815858|ref|XP_002989609.1| hypothetical protein SELMODRAFT_8456 [Selaginella moellendorffii]
 gi|302815944|ref|XP_002989652.1| hypothetical protein SELMODRAFT_8455 [Selaginella moellendorffii]
 gi|300142580|gb|EFJ09279.1| hypothetical protein SELMODRAFT_8456 [Selaginella moellendorffii]
 gi|300142623|gb|EFJ09322.1| hypothetical protein SELMODRAFT_8455 [Selaginella moellendorffii]
 gi|300144272|gb|EFJ10957.1| hypothetical protein SELMODRAFT_8459 [Selaginella moellendorffii]
          Length = 91

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/65 (40%), Positives = 42/65 (64%)

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
           E+R+I+D +  + P+I I++D I GFPGET +DF   M+L+ +  + Q    ++ PR GT
Sbjct: 2   EFRKIVDTLTRLVPEIHIATDIICGFPGETSEDFDRIMELIREYTFPQVHISQFYPRPGT 61

Query: 374 PGSNM 378
           P + M
Sbjct: 62  PAALM 66


>gi|296242832|ref|YP_003650319.1| radical SAM domain-containing protein [Thermosphaera aggregans DSM
           11486]
 gi|296095416|gb|ADG91367.1| Radical SAM domain protein [Thermosphaera aggregans DSM 11486]
          Length = 443

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 63/224 (28%), Positives = 99/224 (44%), Gaps = 38/224 (16%)

Query: 174 RGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDNGVCEITLLGQNV 232
           RG+   + I  GC   C +C V Y +G  +  RS+ ++V  A   +  G  ++  +  + 
Sbjct: 169 RGIVNPIEITRGCSFGCFYCQVSYLQGFTLRHRSIDRIVTYAEIALKLGFKDLRFISPDS 228

Query: 233 NAWRGKGLDGEKCTFSDLLYSLSEIKGLV------------RLRYTTSHPRDMSDCLIKA 280
            ++   GL      FS    +L +I+ L+            R+ Y T  P ++       
Sbjct: 229 LSY---GLP-----FSTSPVNLEKIESLMEGLHAKTVKYGGRIFYGT-FPSEVRP----E 275

Query: 281 HGDLDVLMPY--------LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAIS 332
           H   DVL           L +  QSGS+RILK + R H   E  Q ++   ++R     S
Sbjct: 276 HAQQDVLRTIRKYVANRELIIGGQSGSERILKLIRRGHGVEEIEQAVES--ALREGFTPS 333

Query: 333 SDFIVGFPGETDDDFRATMDLVDKI--GYAQAFSFKYSPRLGTP 374
            DFI+GFP ET++D   T+ L +K+    A+     Y P  GTP
Sbjct: 334 VDFIIGFPSETEEDMLQTLKLAEKLVGKGARIHLHYYIPLPGTP 377


>gi|150401229|ref|YP_001324995.1| radical SAM domain-containing protein [Methanococcus aeolicus
           Nankai-3]
 gi|150013932|gb|ABR56383.1| Radical SAM domain protein [Methanococcus aeolicus Nankai-3]
          Length = 455

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 76/309 (24%), Positives = 132/309 (42%), Gaps = 33/309 (10%)

Query: 62  ADLIVLN---TCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEIL 118
           +D ++L+   T  I ++  + + +F+ R    KN++I  GG +          A  E IL
Sbjct: 58  SDFVLLSLYSTSQIIDENLKNIVNFIKRKS--KNTKIFVGGPV---------SAYPEIIL 106

Query: 119 RRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDY-----------SVEDKFERLSIVD 167
              P+  V++G +     P ++E ++ G    D +             +E     L I +
Sbjct: 107 GELPVDGVIIG-EGELITPNIIEGSKEGLAYRDINNNEIIINTPKLKKLETLHADLLIPN 165

Query: 168 GGYNRK-RGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDNGVCEI 225
              N+  RG   ++    GC   CTFC VP   G EI S+ L +V++E ++    GV  I
Sbjct: 166 NIANQSIRGANVYIETHRGCIGNCTFCQVPKFFGKEIRSKPLDEVLNEVKQFKKRGVKRI 225

Query: 226 TLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLD 285
            + G   + +  K  +  K  F +LL  +S I G   L         + +  + A     
Sbjct: 226 AISGGTGSLYNFKK-EVNKSMFIELLEEVSNIIGAKNLSVPDMRVDYVDEDTLNAIKKYT 284

Query: 286 VLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDD 345
           +   ++   ++SGSD ILKSM +  +  +    I+  +     + +   FIVG P E + 
Sbjct: 285 I--GWVFFGLESGSDNILKSMKKGVSVKKNLNSIELAKQC--SVKVGGSFIVGAPNEKEI 340

Query: 346 DFRATMDLV 354
           D   T D +
Sbjct: 341 DHLLTKDFI 349


>gi|240103836|ref|YP_002960145.1| Radical SAM protein, elongator protein 3/MiaB/NifB related
           [Thermococcus gammatolerans EJ3]
 gi|239911390|gb|ACS34281.1| Radical SAM protein, elongator protein 3/MiaB/NifB related
           [Thermococcus gammatolerans EJ3]
          Length = 424

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 53/207 (25%), Positives = 94/207 (45%), Gaps = 20/207 (9%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK 238
           + I  GC   C +C  PY +G  +  R + Q+V  +R++ D     +  +  N  A+   
Sbjct: 168 IEISRGCPFRCYYCQTPYIKGFRMRHRPIDQIVHYSRRMKD-----MRYITPNAFAYGSP 222

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY-----LHL 293
           G   +      LL +L  ++   R  +  + P ++    +     L++L+ Y     L +
Sbjct: 223 GAILKLNKLEALLRALQPLRKEGRRLFYGTFPSEVRPEFVLPE-TLELLIDYADNRRLAI 281

Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
             QSG D +LK+M+R H     ++ ++ +  V        DFIVG P ET +  R +++L
Sbjct: 282 GAQSGDDAMLKAMHRLHRVEHVKRAVEYM--VEYGFEPVVDFIVGLPNETAESQRKSIEL 339

Query: 354 VDKI----GYAQAFSFKYSPRLGTPGS 376
           ++ I    G  +A  F   P  GTP +
Sbjct: 340 MEWIMRKGGKVRAHYF--MPLPGTPWA 364


>gi|156937162|ref|YP_001434958.1| radical SAM domain-containing protein [Ignicoccus hospitalis
           KIN4/I]
 gi|156566146|gb|ABU81551.1| Radical SAM domain protein [Ignicoccus hospitalis KIN4/I]
          Length = 421

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 51/214 (23%), Positives = 96/214 (44%), Gaps = 16/214 (7%)

Query: 170 YNRKRGVTAFLTIQEGCDKFCTFCVVPYT-RGIEISRSLSQVVDEARKLIDNGVCEITLL 228
           +   RG+   + I  GC   C++C   +  +     RS+  V+  A  + D G+ ++  +
Sbjct: 149 WPHWRGLVGPIEITRGCPFACSYCQTTFMFKAFVRHRSIENVIKYASIMRDMGLKDMRFI 208

Query: 229 GQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLM 288
             N  ++ G   DG +     +   L+ +K L    +  S P ++    +     + +L 
Sbjct: 209 TPNALSYGG---DGRRPNLEAVEELLARLKKLGVRTFFGSFPSEVRPEFVNEE-SIKILK 264

Query: 289 PY-----LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR-SVRPDIAISSDFIVGFPGE 342
            Y     L +  QS SD +LK ++R H    +  +++ +  SV+       DFI+G PGE
Sbjct: 265 KYVSNKRLVIGAQSASDAVLKRIHRGHA---WEDVVNAVEVSVKHGFVPEVDFILGLPGE 321

Query: 343 TDDDFRATMDLVDKIGY--AQAFSFKYSPRLGTP 374
           +++D   T+  + K+    A+A    + P  GTP
Sbjct: 322 SEEDMMETLRGMRKLASMGARAHLHYFMPLPGTP 355


>gi|150402520|ref|YP_001329814.1| radical SAM domain-containing protein [Methanococcus maripaludis
           C7]
 gi|150033550|gb|ABR65663.1| Radical SAM domain protein [Methanococcus maripaludis C7]
          Length = 437

 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 47/182 (25%), Positives = 84/182 (46%), Gaps = 6/182 (3%)

Query: 174 RGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDNGVCEITLLGQNV 232
           RG   ++    GC   CTFC VP   G +I S+ +  +++E  +L  NGV  I + G   
Sbjct: 155 RGANVYIETHRGCLGHCTFCQVPEFFGRDIRSKPIELIIEEVMELKKNGVKRIAISGGTG 214

Query: 233 NAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLH 292
           + +  K     K  F +++ S+S I G   L         + + ++ A     +   ++ 
Sbjct: 215 SLYNFKNT-VNKNKFIEMIESVSNIIGRENLSVPDMRVDYVDEEVLNAIKTYSI--GWVF 271

Query: 293 LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352
             ++SGSD++L SM +     +  + I+  +     + ++  FIVG P E + DF  T D
Sbjct: 272 YGIESGSDKLLNSMKKGTNTKKNLKAIELAKDC--GVKVAGSFIVGHPKEKEVDFLMTKD 329

Query: 353 LV 354
            +
Sbjct: 330 FI 331


>gi|91773434|ref|YP_566126.1| radical SAM family Fe-S protein [Methanococcoides burtonii DSM
           6242]
 gi|91712449|gb|ABE52376.1| Radical SAM family protein with UPF0004 domain [Methanococcoides
           burtonii DSM 6242]
          Length = 368

 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 60/216 (27%), Positives = 95/216 (43%), Gaps = 22/216 (10%)

Query: 174 RGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDNGVCEITLLGQNV 232
           + + + + I  GC   C +C  P   G E+  RS+  +V  A+   D     +     N 
Sbjct: 138 KALRSPIEISRGCPWNCKYCQTPRIFGHEMRHRSIDSIVSFAKYYND-----LRFTSSNA 192

Query: 233 NAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY-- 290
            A+ G G+         LL  LS I G  +  +  + P ++    +  H  LD++  Y  
Sbjct: 193 FAYGGNGIQPRFDKVEALLSKLSSIVG--KNIFFGTFPSEIRPEFV-THEGLDLIDKYCS 249

Query: 291 ---LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDF 347
              + L  QSGSD ILK M R HT+ +    ++R      +I    DFI GFP E ++D 
Sbjct: 250 NRTISLGAQSGSDIILKEMLRGHTSEDVNIAVERC--FEHEIIPVVDFIFGFPNEAEEDQ 307

Query: 348 RATMDLVDKI----GYAQAFSFKYSPRLGTPGSNML 379
           + T++ +  I    G  +A     SP   TP  N++
Sbjct: 308 QRTLEQIKWICKKGGKVRAHYL--SPLPSTPYENIV 341


>gi|261402407|ref|YP_003246631.1| Radical SAM domain protein [Methanocaldococcus vulcanius M7]
 gi|261369400|gb|ACX72149.1| Radical SAM domain protein [Methanocaldococcus vulcanius M7]
          Length = 439

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 78/307 (25%), Positives = 141/307 (45%), Gaps = 31/307 (10%)

Query: 62  ADLIVLN---TCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEIL 118
           +D+I+ +   T HI  +  ++  +F+ + R    +R K      + +AGCV+ A  E IL
Sbjct: 43  SDVIIFSLYSTLHILNENIKRTITFIKKSRK---NRTK------IYIAGCVS-AYPEIIL 92

Query: 119 RRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSV----EDKFE-----RLSIVDGG 169
               +  V+VG +     P +++  + G    + D  V    ++K E      L   D G
Sbjct: 93  NELNVDGVIVG-EGEITTPRIVKGDKEGLAYREGDEIVINLSKEKPELDHPIPLIPKDIG 151

Query: 170 YNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDNGVCEITLL 228
               RG   ++    GC   CTFC VP   G  I SR +  VV+E +     G   I + 
Sbjct: 152 QQSVRGANVYIETHRGCLGNCTFCQVPKFFGKNIRSRDVEDVVEEVKAFKRAGAKRIAIS 211

Query: 229 GQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLM 288
           G   + +  K     +  F +LL ++S+I G   L         + + ++ A  +  +  
Sbjct: 212 GGTGSLYAFKK-SVNRNKFFELLENVSKIVGKNNLSVPDMRVDYVDEDILTAIKNYTI-- 268

Query: 289 PYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP-DIAISSDFIVGFPGETDDDF 347
            ++   ++SGSD+IL+ M ++ T  E  + +D I+  +  ++ ++  FIV +P ET+ D+
Sbjct: 269 GWVFYGIESGSDKILRDM-KKGTNRE--KNLDAIKLAKDCEVKVAGSFIVAYPTETEMDY 325

Query: 348 RATMDLV 354
             T D +
Sbjct: 326 LLTKDFI 332


>gi|289192769|ref|YP_003458710.1| Radical SAM domain protein [Methanocaldococcus sp. FS406-22]
 gi|288939219|gb|ADC69974.1| Radical SAM domain protein [Methanocaldococcus sp. FS406-22]
          Length = 437

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 79/299 (26%), Positives = 134/299 (44%), Gaps = 30/299 (10%)

Query: 68  NTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVV 127
           +T HI  K   +   F+ ++R  K           V +AGC++    E IL    +  V+
Sbjct: 52  STLHILNKNIREAIDFIKKVRKNKTK---------VYIAGCISTYP-EIILNELNVDGVI 101

Query: 128 VGPQTYYRLPELLERARFG-------KRVVDTDYSVEDKFERLSIV--DGGYNRKRGVTA 178
           VG +     P ++E  + G       + VV+      D    L ++  D G    RG   
Sbjct: 102 VG-EGEITTPRIIEGDKEGLAYREGDEIVVNYPKERPDLNHPLPLIPKDIGQQSIRGANV 160

Query: 179 FLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR- 236
           ++    GC   CTFC VP   G  I SR +  VV+E +     G   I + G   + +  
Sbjct: 161 YIETHRGCLGNCTFCQVPKFFGKTIRSREVEDVVEEVKAFKRAGAKRIAISGGTGSLYAF 220

Query: 237 GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQ 296
            K ++ EK  F +LL  +SE+ G   L         + + +++A  +  +   ++   ++
Sbjct: 221 KKSVNREK--FFELLEKVSEVVGKNNLSVPDMRVDYVDEDILEAIKNYTI--GWVFYGIE 276

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRP-DIAISSDFIVGFPGETDDDFRATMDLV 354
           SGSD+ILK M ++ T  E  + +D I+  +   + ++  FIV +P ETD D+  T D +
Sbjct: 277 SGSDKILKDM-KKGTNRE--KNLDAIKLAKDCGVKVAGSFIVAYPTETDMDYLLTKDFI 332


>gi|319790240|ref|YP_004151873.1| Radical SAM domain protein [Thermovibrio ammonificans HB-1]
 gi|317114742|gb|ADU97232.1| Radical SAM domain protein [Thermovibrio ammonificans HB-1]
          Length = 425

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 55/228 (24%), Positives = 101/228 (44%), Gaps = 29/228 (12%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGI-EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK 238
           + I  GC   C +C  P+  G  +  R L QVV+   ++ + G+ +   +  N  ++  +
Sbjct: 179 IEISRGCPYVCYYCQTPFMFGARQRHRPLEQVVEVISRMREFGLKDFRFITPNAFSYGSE 238

Query: 239 GLDGEKCTFSDLLYSLSEIK-----------GLVRLRYTTSHPRDMSDCLIKAHGDLDVL 287
             DG+      L   L+E K           G         H  + +  L+K     D L
Sbjct: 239 --DGKSVNLEALREFLAETKRAAGPGGRIFLGSFPSEVRPEHVTEETVSLVKEFASNDNL 296

Query: 288 MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR-SVRPDIAISSDFIVGFPGETDDD 346
           +    +  QSGSDR+LK  +R HT      ++  ++ +V+  +  + DFI G PGET++D
Sbjct: 297 V----IGAQSGSDRVLKLCHRGHTV---EDVVRAVKITVKAGLKANVDFIFGLPGETEED 349

Query: 347 FRATMDLVD---KIG---YAQAF-SFKYSPRLGTPGSNMLEQVDENVK 387
              T+ ++    K+G   +A  F     +P  G P   +  ++++ ++
Sbjct: 350 VLETVKVMRELVKLGARVHAHTFMPLPQTPFAGKPAGKVHRKMEKLIR 397


>gi|212223332|ref|YP_002306568.1| hypothetical protein TON_0186 [Thermococcus onnurineus NA1]
 gi|212008289|gb|ACJ15671.1| hypothetical protein, conserved [Thermococcus onnurineus NA1]
          Length = 424

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 51/207 (24%), Positives = 96/207 (46%), Gaps = 20/207 (9%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK 238
           + I  GC   C +C  PY +G+ +  R + Q+V  +R++ D     +  +  N  A+   
Sbjct: 168 IEITRGCPFGCYYCQTPYIKGLRMRHRPIDQIVKYSRRMKD-----MRYITPNAFAYGSP 222

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY-----LHL 293
           G   +      LL +L  ++   R  +  + P ++    +     L++L+ Y     L +
Sbjct: 223 GAILKINKLEALLKALQPLRKEGRRLFYGTFPSEVRPEFVLPE-TLELLIDYADNRRLAI 281

Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
             QSG D +L++M+R H     ++ ++ +     +  +  DFIVG P ET +  R +++L
Sbjct: 282 GAQSGDDAMLRAMHRIHKVEHVQKAVEYMLEYGFEPVV--DFIVGLPNETPESQRKSIEL 339

Query: 354 VDKI----GYAQAFSFKYSPRLGTPGS 376
           ++ I    G  +A  F   P  GTP +
Sbjct: 340 MEWIIKKGGKVRAHYF--MPLPGTPWA 364


>gi|159905287|ref|YP_001548949.1| radical SAM domain-containing protein [Methanococcus maripaludis
           C6]
 gi|159886780|gb|ABX01717.1| Radical SAM domain protein [Methanococcus maripaludis C6]
          Length = 369

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 89/367 (24%), Positives = 154/367 (41%), Gaps = 46/367 (12%)

Query: 49  FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGC 108
           F +  E + ++D  ++++ +   ++EK   +V + +  ++ LK        D++++  G 
Sbjct: 26  FKEFNEIIENLDSLEILIYSFMSMQEK---EVLNEINELKKLKR-------DIILIAGGP 75

Query: 109 VAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDG 168
                 E+ L      +V++G +    LP L+   + GK       + E   + + I + 
Sbjct: 76  HPSGCPEDTLNLG-FDHVIIG-EGEISLPNLINSIKSGK-------NPEKIIKGIPIENF 126

Query: 169 GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDNGVCEITL 227
               K    A + I  GC   C FC  P   G  I  RS+  +V   + + D     I  
Sbjct: 127 DNYEKIWPLAPIEITRGCPYNCRFCQTPQIFGKNIRHRSIESIVKIVKTMGD-----IRF 181

Query: 228 LGQNVNAWRGK-GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV 286
           +  N  ++  K G   +      L+ SL EIK   RL + T  P ++    +     LD+
Sbjct: 182 VTPNAFSYGSKTGTKPDIEKLEKLMKSLFEIKK--RLFFGT-FPSEVRPEFVTFE-TLDL 237

Query: 287 LMPY-----LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPG 341
           +  Y     +H   QSGSD +LK + R H   +    ++  R    D+    DFI GFP 
Sbjct: 238 VNKYCDNRYIHFGAQSGSDEVLKHIRRGHLVSDVITAVETSREC--DLIPKVDFIFGFPD 295

Query: 342 ETDDDFRATMDL----VDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKK 397
           ET+   + ++DL    + K G   A  F   P  GT   N      E ++ E L  L K 
Sbjct: 296 ETEIQRKESIDLMKYIIKKNGKVHAHYF--MPLCGTYFEN---STPEPLEKEILDILGKM 350

Query: 398 LREQQVS 404
            ++ Q++
Sbjct: 351 AKKGQIT 357


>gi|282162760|ref|YP_003355145.1| hypothetical protein MCP_0090 [Methanocella paludicola SANAE]
 gi|282155074|dbj|BAI60162.1| conserved hypothetical protein [Methanocella paludicola SANAE]
          Length = 370

 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 60/232 (25%), Positives = 102/232 (43%), Gaps = 31/232 (13%)

Query: 166 VDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEI 225
           +DG    K  +   + I  GC   C +C  P   G  +     + + +  K  ++     
Sbjct: 129 LDGHPPFKPPLFGPIEITRGCPWSCAYCQTPRLFGHHMRHRSVEAICKYDKFYEDK---- 184

Query: 226 TLLGQNVNAWRGKGLDGEKCTFSDLLYSLS------EIKGLVRLRYTTSHPRDMSDCLIK 279
            L+  N  A+   G+  ++    +LL SLS           VR  + T  PR +   L+ 
Sbjct: 185 RLVSPNAFAYGSDGITPDEAAVENLLKSLSGNIYFGTFPSEVRPEFVT--PRMLE--LVN 240

Query: 280 AHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD-IAISSDFIVG 338
           A+         +HL  QSGSDR+LK+++R HTA    Q++D +     + +    DFI G
Sbjct: 241 AY----CANREIHLGGQSGSDRMLKAIHRGHTA---AQVLDAVELTHDNGLTPVVDFIFG 293

Query: 339 FPGETDDDFRATMDLVDKI----GYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
            PGE ++D + T+D ++ I    G  +A  F     +  PG+ + +   E +
Sbjct: 294 LPGEREEDQQLTVDCINAIIKEGGKVRAHYF-----MPLPGTELADTKPEKI 340


>gi|302809031|ref|XP_002986209.1| hypothetical protein SELMODRAFT_123663 [Selaginella moellendorffii]
 gi|300146068|gb|EFJ12740.1| hypothetical protein SELMODRAFT_123663 [Selaginella moellendorffii]
          Length = 68

 Score = 60.1 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 26/67 (38%), Positives = 42/67 (62%)

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           M R +T  E+R+I+D +  + P+I I++D I GFPGET +DF   M+L+ +  + Q    
Sbjct: 1   MKREYTFSEFRKIVDTLTRLVPEIHIATDIICGFPGETSEDFDRIMELIREYTFPQVHIS 60

Query: 366 KYSPRLG 372
           ++ PR G
Sbjct: 61  QFYPRPG 67


>gi|256811066|ref|YP_003128435.1| Radical SAM domain protein [Methanocaldococcus fervens AG86]
 gi|256794266|gb|ACV24935.1| Radical SAM domain protein [Methanocaldococcus fervens AG86]
          Length = 443

 Score = 60.1 bits (144), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 87/345 (25%), Positives = 155/345 (44%), Gaps = 40/345 (11%)

Query: 32  YGCQMNVYDSLRMEDMFFSQGY--ERVNSMDD-----ADLIVLN---TCHIREKAAEKVY 81
           Y   +  Y S+ +  +   +GY    V ++D      +D+++ +   T HI +K   +  
Sbjct: 6   YSPNVYTYGSMLIGGILKDRGYNVHLVRNIDKTLFLKSDVVIFSLYSTLHILDKEINEAI 65

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           +F+ ++R  K           V VAGCV+ A  E IL    +  V+VG +     P+++E
Sbjct: 66  NFIKKVRKNKTK---------VYVAGCVS-AYPEIILNELNVDGVIVG-EGELTTPKIIE 114

Query: 142 RARFG-------KRVVDTDYSVEDKFERLSIV--DGGYNRKRGVTAFLTIQEGCDKFCTF 192
               G       + VV+      D    L ++  D G    RG   ++    GC   CTF
Sbjct: 115 GDNEGLAYKNGDEIVVNYPKEKPDLNHPLPLIPKDIGQQSVRGANVYIETHRGCLGNCTF 174

Query: 193 CVVPYTRGIEI-SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR-GKGLDGEKCTFSDL 250
           C VP   G  I SR +  VV+E +     G   I + G   + +   K ++ +K  F +L
Sbjct: 175 CQVPKFFGKTIRSREVEDVVEEVKAFKRAGAKRIAISGGTGSLYAFKKSVNRDK--FFEL 232

Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
           L  +S I G   L         + + +++A  +  +   ++   ++SGSD+IL+ M ++ 
Sbjct: 233 LEKISGIVGKNNLSVPDMRVDYVDEDILEAIKNYTI--GWVFYGIESGSDKILRDM-KKG 289

Query: 311 TAYEYRQIIDRIRSVRP-DIAISSDFIVGFPGETDDDFRATMDLV 354
           T  E  + +D I+  +   + ++  FIV +P ET+ D+  T D +
Sbjct: 290 TNRE--KNLDAIKLAKDCGVKVAGSFIVAYPTETEKDYLLTKDFI 332


>gi|254172700|ref|ZP_04879375.1| Fe-S oxidoreductase family protein [Thermococcus sp. AM4]
 gi|214033629|gb|EEB74456.1| Fe-S oxidoreductase family protein [Thermococcus sp. AM4]
          Length = 417

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/207 (24%), Positives = 95/207 (45%), Gaps = 20/207 (9%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK 238
           + I  GC   C +C  PY +G  +  R + Q+V  +R++ D     +  +  N  A+   
Sbjct: 161 IEISRGCPFRCYYCQTPYIKGFRMRHRPIDQIVKYSRRMKD-----MRYITPNAFAYGSP 215

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY-----LHL 293
           G   +      LL +L  ++   R  +  + P ++    +     L++L+ Y     L +
Sbjct: 216 GAILKLNKLEALLKALQHLRKEGRRLFYGTFPSEVRPEFVLPE-TLELLIDYADNRRLAI 274

Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
             QSG D +LK+M+R H     ++ ++ +     +  +  DFIVG P E+++  R +++L
Sbjct: 275 GAQSGDDAMLKAMHRLHRVEHVQRAVEYMLEYGFEPVV--DFIVGLPNESEESQRKSIEL 332

Query: 354 VDKI----GYAQAFSFKYSPRLGTPGS 376
           +  I    G  +A  F   P  GTP +
Sbjct: 333 MKWIMRKGGKVRAHYF--MPLPGTPWT 357


>gi|330896113|gb|EGH28334.1| ribosomal protein S12 methylthiotransferase [Pseudomonas syringae
           pv. japonica str. M301072PT]
          Length = 169

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 54/182 (29%), Positives = 81/182 (44%), Gaps = 29/182 (15%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  FV S GC   + DS R+      +GYE V + +DAD++V+NTC   + A  +    
Sbjct: 10  PKVGFV-SLGCPKALVDSERILTQLRMEGYEVVATYEDADVVVVNTCGFIDTAKAESLEV 68

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G         IKE G   V+V GC+   +   I    P V  V GPQ Y          
Sbjct: 69  IGE-------AIKENGK--VIVTGCMG-VDASVIRNVHPSVLSVTGPQQY---------- 108

Query: 144 RFGKRVVDTDYSV----EDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
              ++VV+  + V    +D    + +V   G        A+L I EG +   +FC++P  
Sbjct: 109 ---EQVVNAVHDVVPPRKDHNPLIDLVPPQGVKLTPRHYAYLKISEGGNHSGSFCIIPSM 165

Query: 199 RG 200
           RG
Sbjct: 166 RG 167


>gi|14591464|ref|NP_143544.1| hypothetical protein PH1701 [Pyrococcus horikoshii OT3]
 gi|3258131|dbj|BAA30814.1| 428aa long hypothetical protein [Pyrococcus horikoshii OT3]
          Length = 428

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 84/361 (23%), Positives = 154/361 (42%), Gaps = 55/361 (15%)

Query: 50  SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR-IRNLKNSR--IKEGGDLLVVVA 106
           SQGY+  N +   DL  +    ++ K    +YSF  + +  +K     +KE  + ++V  
Sbjct: 29  SQGYDLSNILVTKDLNEI----VKAKPKVVLYSFYSQEVDEVKKEVEILKEKINPILVAG 84

Query: 107 GCVAQAEGEEILRRSPIVNVVVGP--QTYYRLPELLERARF----------------GKR 148
           G  A A  +  L        V+G   +T YRL   L+++ +                G+R
Sbjct: 85  GYHAIAMPKHTLNVLGFDIAVIGEGEETLYRLLTSLKKSNYKITKELTDIKGLAFYLGER 144

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSL 207
              T ++  + F +      G      + + + I  GC   C +C  PY +G  +  R +
Sbjct: 145 FFFTGFAKVEDFWKFPPYPEGLK----LISPMEISRGCPFGCYYCQTPYAKGFRMRHRPI 200

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKG--LDGEKCTFSDLLYSLSEIKGLVRLRY 265
            Q+V  +R++ D     +  +  N  A+   G  L  EK     LL +L  ++   R  +
Sbjct: 201 DQIVKYSRRMKD-----MRYITPNAFAYGSPGGILKVEKV--EALLRALQPLRKEGRRLF 253

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPY-----LHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
             + P ++    +     L++L+ Y     + +  QSG + +LK+M+R H       +I+
Sbjct: 254 YGTFPSEVRPDFV-TRETLELLVKYTDTKRIAIGAQSGDNAMLKAMHRLHKV---EHVIN 309

Query: 321 RIR-SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI----GYAQAFSFKYSPRLGTPG 375
            +  S+   +    DFIVG P E+ +  + +++L+  I    G  +A  F   P  GTP 
Sbjct: 310 AVELSLEYGLEPVVDFIVGLPNESPESQKKSIELMKWIMRKGGKVRAHYF--MPLPGTPW 367

Query: 376 S 376
           +
Sbjct: 368 A 368


>gi|288931012|ref|YP_003435072.1| radical SAM protein [Ferroglobus placidus DSM 10642]
 gi|288893260|gb|ADC64797.1| Radical SAM domain protein [Ferroglobus placidus DSM 10642]
          Length = 496

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 71/276 (25%), Positives = 124/276 (44%), Gaps = 32/276 (11%)

Query: 100 DLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSV--- 156
           D+ VVV G  A    EE +RR   ++VVV  +    +PEL  +   G+ V +  Y V   
Sbjct: 141 DVKVVVGGAGAWQLEEERIRRKYGIDVVVIGEGEKVVPELFRKIIEGEDVPEVVYGVAVP 200

Query: 157 EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARK 216
           ED+  ++        R+  +   + I  GC + C FC +P  R +  SR L  +++EAR 
Sbjct: 201 EDEIPKI--------RRAAIGGIVEIARGCGRGCKFC-IPTMRRLR-SRPLEDILEEARV 250

Query: 217 LI-DNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV-----RLRYTTSHP 270
              D  +  +TL  ++V  ++ KG    K     L   +  I G V      L    S P
Sbjct: 251 TARDKDI--VTLHAEDVLRYKAKGFTINKEEVLRLFREVHRIVGKVGISHFALSSVASAP 308

Query: 271 ---RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM----NRRHTAYEYRQIIDRIR 323
               ++S+ L   + +   L       +++GS R+++       +  +A E+R ++ +  
Sbjct: 309 DVVEEISEILELPNKEQKWLAG--QTGIETGSPRLIEKYMPGKAKPFSASEWRDVVIQAF 366

Query: 324 SVRPDI--AISSDFIVGFPGETDDDFRATMDLVDKI 357
            +  D      +  IVGFP E ++D   T++LV+ +
Sbjct: 367 QICSDAHWVPCATLIVGFPDEREEDIIKTIELVEDL 402


>gi|256811095|ref|YP_003128464.1| Radical SAM domain protein [Methanocaldococcus fervens AG86]
 gi|256794295|gb|ACV24964.1| Radical SAM domain protein [Methanocaldococcus fervens AG86]
          Length = 426

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/207 (25%), Positives = 95/207 (45%), Gaps = 18/207 (8%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDNGVCEITLLGQNVNAW--- 235
           + I  GC   C FC  P   G  +  RS+  +      + +  + +I  +  N   +   
Sbjct: 177 IEITRGCPYSCYFCQTPRIFGKNVRHRSIENICKYVEIMAERNLKDIRFITPNAFGYGSK 236

Query: 236 RGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY----- 290
            GK L+ +K     LL ++ EI G     +  + P ++    +     +D+++ Y     
Sbjct: 237 DGKTLNIDKI--EKLLENIREILGKDGRIFFGTFPSEVRPEHVNDE-TVDLILKYADNKN 293

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
           L +  QSGS RIL   NR HT  +    ++   +++  +++S DFI G PGET++D   T
Sbjct: 294 LVIGAQSGSQRILDLCNRGHTVEDIYNAVNT--AIKKGVSVSLDFIFGLPGETEEDVEKT 351

Query: 351 MDLVD---KIGYAQAFSFKYSPRLGTP 374
           + ++    K+G A+  +  + P   TP
Sbjct: 352 IKVMKDLIKMG-AKIHAHAFMPLPQTP 377


>gi|57641347|ref|YP_183825.1| hypothetical protein TK1412 [Thermococcus kodakarensis KOD1]
 gi|57159671|dbj|BAD85601.1| hypothetical protein, conserved, radical SAM superfamily fused to
           B12-binding domain [Thermococcus kodakarensis KOD1]
          Length = 424

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 52/207 (25%), Positives = 94/207 (45%), Gaps = 20/207 (9%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK 238
           + I  GC   C +C  PY +G  +  R + Q+V  ++++ D     +  +  N  A+   
Sbjct: 168 IEITRGCPFGCYYCQTPYIKGFRMRHRPIDQIVKYSKRMKD-----MRYITPNAFAYGSP 222

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY-----LHL 293
           G   +      LL +L  ++   R  +  + P ++    +     L++L+ Y     L +
Sbjct: 223 GAILKLDKLEALLKALQPLRKEGRRLFYGTFPSEVRPEFVLPE-TLELLIDYADNRRLAI 281

Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
             QSG D +LK+M+R H     ++ ++ +     +  +  DFIVG P ET +  R +++L
Sbjct: 282 GAQSGDDAMLKAMHRLHRVEHVQRAVEYMLEYGFEPVV--DFIVGLPNETRESQRKSIEL 339

Query: 354 VDKI----GYAQAFSFKYSPRLGTPGS 376
           +  I    G  +A  F   P  GTP S
Sbjct: 340 MKWIMAKGGKVRAHYF--MPLPGTPWS 364


>gi|20089140|ref|NP_615215.1| hypothetical protein MA0242 [Methanosarcina acetivorans C2A]
 gi|19914008|gb|AAM03695.1| conserved hypothetical protein [Methanosarcina acetivorans C2A]
          Length = 373

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 65/235 (27%), Positives = 105/235 (44%), Gaps = 32/235 (13%)

Query: 170 YNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDNGVCEITLL 228
           ++ KR + A + I  GC   C +C  P   G E+  RS+  V+  AR   D     +  +
Sbjct: 136 FDPKR-LRAPIEISRGCPWGCRYCQTPRLFGREVRHRSIDSVLKNARYYDD-----LRFI 189

Query: 229 GQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLM 288
             N  A+   G+         LL +L E+    +  +  + P ++    +     ++++ 
Sbjct: 190 ASNAFAYGSDGIHPRFDKVEKLLSALHELPD--KKIFFGTFPSEVRPEFVTEE-SVELVR 246

Query: 289 PY-----LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV----RPDIAISSDFIVGF 339
            Y     L L  QSGSDR+LK + R HT      + D I +V      +IA + DFI G 
Sbjct: 247 KYCANDSLSLGAQSGSDRVLKEIRRGHT------VEDSISAVECCLEHEIAPAVDFIFGL 300

Query: 340 PGETDDDFRATMDLV----DKIGYAQAFSFKYSPRLGTP-GSNMLEQVDENVKAE 389
           P ET++D   +++LV     K G  +A     +P  GTP  S +  +V   V+ E
Sbjct: 301 PTETEEDQEKSLELVRWICKKGGTVRAHYM--TPLPGTPYASAVPSKVSNRVRRE 353


>gi|210612681|ref|ZP_03289429.1| hypothetical protein CLONEX_01631 [Clostridium nexile DSM 1787]
 gi|210151483|gb|EEA82491.1| hypothetical protein CLONEX_01631 [Clostridium nexile DSM 1787]
          Length = 58

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/57 (47%), Positives = 39/57 (68%)

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           TSHP+D+SD LI+       +  +LHLPVQSGS  ILK MNR +T  +Y +++ +I+
Sbjct: 2   TSHPKDLSDELIEVMRHSKKICKHLHLPVQSGSTEILKKMNRHYTKEQYLELVRKIK 58


>gi|303244458|ref|ZP_07330793.1| Radical SAM domain protein [Methanothermococcus okinawensis IH1]
 gi|302485156|gb|EFL48085.1| Radical SAM domain protein [Methanothermococcus okinawensis IH1]
          Length = 447

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 54/196 (27%), Positives = 86/196 (43%), Gaps = 20/196 (10%)

Query: 167 DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDNGVCEI 225
           D G    RG   ++    GC   CTFC VP   G +I S+ L  +++E ++    GV  I
Sbjct: 159 DIGAQSIRGANVYIETHRGCIGNCTFCQVPKFFGKDIRSKPLELILEEVKEFKKKGVKRI 218

Query: 226 TLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLD 285
            + G   + +  K  +  K  F +LL  +S I G   L    S P    D +     D D
Sbjct: 219 AISGGTGSLYNFKK-EVNKSMFIELLEKVSRIIGNKNL----SVPDMRVDYV-----DRD 268

Query: 286 VL-------MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVG 338
            L       + ++   ++SGSD+ILKSM +     +    ++  +     + +   FIVG
Sbjct: 269 TLTAVKKYTIGWVFYGIESGSDKILKSMKKGTNREKNLNAVNLAKEC--GVKVGGSFIVG 326

Query: 339 FPGETDDDFRATMDLV 354
            P E + D+  T D +
Sbjct: 327 HPEEKEVDYLLTKDFI 342


>gi|41614944|ref|NP_963442.1| hypothetical protein NEQ148 [Nanoarchaeum equitans Kin4-M]
 gi|40068668|gb|AAR39003.1| NEQ148 [Nanoarchaeum equitans Kin4-M]
          Length = 444

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 67/278 (24%), Positives = 114/278 (41%), Gaps = 50/278 (17%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK 238
           + I  GC   C +C  P+ +G  +  R + Q+V  +R L D     +  +  N  A+   
Sbjct: 166 IEISRGCPFGCNYCQTPFFKGFRMRHRPIDQIVKHSRYLRD-----MRYISPNAFAYGSP 220

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY-----LHL 293
           G          LL +L  ++   R  +  + P ++    +     L++L+ Y     + +
Sbjct: 221 GAILVLEKLEALLRALQPLRKEGRRLFFGTFPSEVRPEFVIPE-TLELLLKYADNRKIII 279

Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
             QSG +RILK M+R H     ++ ++   S+        DFIVG P E ++  R T++L
Sbjct: 280 GAQSGDNRILKLMHRLHDVETIKRAVE--YSIEYGFTPIVDFIVGTPYEDEESDRNTIEL 337

Query: 354 ----VDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDAC 409
               + K G  +A  F   P  GTP +               LC  K L ++ V F    
Sbjct: 338 MKWIISKGGKVRAHYF--MPLPGTPWA---------------LCKPKPLSKEMVRFLGTM 380

Query: 410 VGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNI 447
             Q              KL G   W++ + L++K H++
Sbjct: 381 ARQ-------------SKLEGE--WVKQIELSNKLHSL 403


>gi|239617821|ref|YP_002941143.1| Radical SAM domain protein [Kosmotoga olearia TBF 19.5.1]
 gi|239506652|gb|ACR80139.1| Radical SAM domain protein [Kosmotoga olearia TBF 19.5.1]
          Length = 389

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 61/214 (28%), Positives = 93/214 (43%), Gaps = 25/214 (11%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK 238
           + I  GC   C +C  P   G  +  RS+  ++  AR+ ++ G      +  N   +  K
Sbjct: 143 MEISRGCPFGCNYCQTPRIFGRRVRHRSVENILHFARESVERGRKVARFITPNAFGYGSK 202

Query: 239 -GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM-----SD---CLIKAHGDLDVLMP 289
            G+        +LL  + +I   +R  Y  S P D+     SD    +++   D  V++ 
Sbjct: 203 NGVTPNTKVIYELLSGMRKIG--MREVYFGSFPSDVRPESVSDDVLAIVQEFCDNKVIV- 259

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV-RPDIAISSDFIVGFPGETDDD-- 346
              + +QSGSDRILK +NR H   + +  I+ IR + R       D I GFP E D D  
Sbjct: 260 ---VGLQSGSDRILKQLNRGH---DVQTAINTIRKISRYGFTPYVDMIFGFPFEEDSDIE 313

Query: 347 --FRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
             F     L +K G A      + P  GTP  N+
Sbjct: 314 KSFEVAYYLYEKYG-AVIHGHTFMPLPGTPFENL 346


>gi|21227624|ref|NP_633546.1| Fe-S oxidoreductase [Methanosarcina mazei Go1]
 gi|20906012|gb|AAM31218.1| Fe-S oxidoreductase [Methanosarcina mazei Go1]
          Length = 374

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 86/339 (25%), Positives = 140/339 (41%), Gaps = 50/339 (14%)

Query: 80  VYSFLGR-----IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYY 134
           +YSF  R      + ++N+    G D + +  G       EE L+    V +  G +T  
Sbjct: 37  IYSFTTRQAAKVFKEVENA----GTDSIFIAGGPHPSGCPEETLKYFDYVVIGEGEETLP 92

Query: 135 RLPELLERARFGKRVVDTDYSVEDK------FERLSIVDGGYN--RKRGVTAFLTIQEGC 186
            L  +L++      V    Y   D        ER  +    Y     + + A + I  GC
Sbjct: 93  ELVRVLQKKGDPGEVKGIAYKNPDTGRITLTPERPHVNLDSYPCFDPKKLRAPIEISRGC 152

Query: 187 DKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
              C +C  P   G E+  RS+  ++  A+   D     +  +  N  A+   G DG   
Sbjct: 153 PWGCKYCQTPRLFGREVRHRSIDSILKNAQHYND-----LRFIASNAFAY---GSDGIHP 204

Query: 246 TFSDLLYSLSEIKGLVRLR-YTTSHPRDMSDCLIKAHGDLDVLMPY-----LHLPVQSGS 299
            F  +   LS +  L   + +  + P ++    +     ++++  Y     L L  QSGS
Sbjct: 205 RFDKVEKLLSALHKLPDKKIFFGTFPSEVRPEFVTEE-SVELVRKYCANDSLSLGAQSGS 263

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSV----RPDIAISSDFIVGFPGETDDDFRATMDLV- 354
           DRILK + R HT      + D I +V      DI  + DFI G P ET++D   +++LV 
Sbjct: 264 DRILKEIRRGHT------VEDSISAVECCLEHDIMPAVDFIFGLPTETEEDQEKSLELVR 317

Query: 355 ---DKIGYAQAFSFKYSPRLGTP-GSNMLEQVDENVKAE 389
              +K G  +A     +P  GTP  S++   V + V+ E
Sbjct: 318 WICEKGGTVRAHYM--TPLPGTPYASSVPSDVSDRVRRE 354


>gi|14520689|ref|NP_126164.1| hypothetical protein PAB0314 [Pyrococcus abyssi GE5]
 gi|5457905|emb|CAB49395.1| Fe-S oxidoreductase family protein [Pyrococcus abyssi GE5]
          Length = 425

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 54/210 (25%), Positives = 96/210 (45%), Gaps = 26/210 (12%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK 238
           + I  GC   C +C  PY +G  +  R + Q+V  +R++ D     +  +  N  A+   
Sbjct: 169 MEISRGCPFGCYYCQTPYAKGFRMRHRPIDQIVKYSRRMKD-----MRYITPNAFAYGSP 223

Query: 239 G--LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY-----L 291
           G  L  EK     LL +L  ++   R  +  + P ++    +     +++L+ Y     L
Sbjct: 224 GGILKIEKV--EALLRALQPLRKEGRRLFYGTFPSEVRPEFVTRE-TIELLVDYTDTRRL 280

Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR-SVRPDIAISSDFIVGFPGETDDDFRAT 350
            +  QSG D +LK+M+R H       +++ +  ++   +    DFIVG P ET +  R +
Sbjct: 281 AIGAQSGDDAMLKAMHRVHKV---EHVVNAVELALEYGLTPVVDFIVGLPNETPESQRKS 337

Query: 351 MDLVDKI----GYAQAFSFKYSPRLGTPGS 376
           ++L+  I    G  +A  F   P  GTP +
Sbjct: 338 IELMKWIMRKGGKVRAHYF--MPLPGTPWA 365


>gi|148262459|ref|YP_001229165.1| radical SAM domain-containing protein [Geobacter uraniireducens
           Rf4]
 gi|146395959|gb|ABQ24592.1| Radical SAM domain protein [Geobacter uraniireducens Rf4]
          Length = 433

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 68/282 (24%), Positives = 127/282 (45%), Gaps = 35/282 (12%)

Query: 103 VVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFER 162
           VV+ G  A  + EE L      + VV  +  Y  PELLE  R G+  +   Y   D+F  
Sbjct: 88  VVMGGFHASLQPEECLEHC---DAVVEGEAEYIWPELLEDFRAGR--MKRRYKA-DRFHD 141

Query: 163 LSIVDGG----YNRKRGVTAFLTIQ--EGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEAR 215
           L  +        +R++ +  FL +    GC   C+FC VP   G +   R + +V+++ R
Sbjct: 142 LKGLPAPRWDLLDRRKYLAPFLPVMTTRGCPFQCSFCEVPVVYGTKYRHRPIGEVIEDMR 201

Query: 216 KLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD--M 273
           ++      +I ++  N+         G +    +L  ++  +K      +T +  RD  +
Sbjct: 202 RIPTR---KIQIVDDNIA--------GSREYAKELFKAMIPLKVRWSCLWTINTSRDTEL 250

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV-RPDIAIS 332
            D  ++A       + ++++ V+S S   L ++N+R      R+ +D +R + +  I  S
Sbjct: 251 LDLAMRAG------VAHVNIGVESISQSSLGTINKRQN--NVREYVDMLREMEKRRIFYS 302

Query: 333 SDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
            +F+ G   +T + F  T+D + ++     F    +PR GTP
Sbjct: 303 LNFMFGLDEDTPEIFIDTLDFLKQVKAPMVFFNTVTPREGTP 344


>gi|108759358|ref|YP_634573.1| B12 binding /radical SAM domain-containing protein [Myxococcus
           xanthus DK 1622]
 gi|2811129|gb|AAB97826.1| unknown [Myxococcus xanthus DK 1622]
 gi|108463238|gb|ABF88423.1| B12 binding/radical SAM domain protein [Myxococcus xanthus DK 1622]
          Length = 427

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 77/301 (25%), Positives = 128/301 (42%), Gaps = 33/301 (10%)

Query: 97  EGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTD--- 153
           EG D+L +  G  A AE  + L+     ++V   +  Y L  LL R   G+   +T    
Sbjct: 88  EGRDVLCIAGGVHATAETLQTLQAG--FDLVAVGEGEYSLRALLGRVLRGEVPRETHGVA 145

Query: 154 YSVEDKFERLSIVDG-------GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SR 205
           Y  + K  +    +G        +  + G    + I  GC   C FC  P+        R
Sbjct: 146 YLKDGKLVQHGRGEGVQLDDFPPFAARNGQYGAIEITRGCIYACRFCQTPFMSKARFRHR 205

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV---- 261
           S++ V   AR+L  +G  +I  +     ++   G   E      +   L+ +K  +    
Sbjct: 206 SVANVAHWARELRRSGRRDIRFITPTSMSY---GTADESVNLDAVEALLAAVKEAMAPDG 262

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLH-----LPVQSGSDRILKSMNRRHTAYEYR 316
           R+ Y T  P ++    +     L++L  Y+H     +  QSGS+RIL+S  R H   +  
Sbjct: 263 RVYYGT-FPSEVRPEHVTPEA-LELLKRYVHNDNLIIGGQSGSERILQSTRRGH---DVE 317

Query: 317 QIIDRIR-SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG--YAQAFSFKYSPRLGT 373
            ++   R +V      + DFI+G PGE  +D  AT+ L++K+    A+     + P  GT
Sbjct: 318 TVVRATRIAVECGFVPNVDFILGLPGEEPEDVDATVALMEKLAGLGARVHGHTFMPLPGT 377

Query: 374 P 374
           P
Sbjct: 378 P 378


>gi|296132310|ref|YP_003639557.1| Radical SAM domain protein [Thermincola sp. JR]
 gi|296030888|gb|ADG81656.1| Radical SAM domain protein [Thermincola potens JR]
          Length = 443

 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 51/207 (24%), Positives = 92/207 (44%), Gaps = 24/207 (11%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK 238
           + I  GC   C+FC   +  G +   RS+  ++   R L + G+ +I  +    NA+   
Sbjct: 194 IEITRGCPYLCSFCQTGHIFGPQPRHRSIENILGYVRLLTERGLTDIKFI--TPNAFSYG 251

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLR---YTTSHPRDMSD--------CLIKAHGDLDVL 287
             DG+    + L   L  ++ ++  R   +  S P ++           L++ + + D L
Sbjct: 252 SPDGKTINVNKLEALLRGVRAIIGNRGRIFMGSFPSEVRPEHVTEETVNLVRKYANNDNL 311

Query: 288 MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDF 347
           +    +  QSGS RIL   +R H   +  + +D   +VR  +  + DFI G PGE   D 
Sbjct: 312 I----IGAQSGSQRILDLCHRGHKVEDIFRAVDI--TVRAGLVANVDFIFGLPGEEPADV 365

Query: 348 RATM----DLVDKIGYAQAFSFKYSPR 370
           + T+    +LV++     A +F   P+
Sbjct: 366 KQTIQVIKELVERGARVHAHTFMPLPQ 392


>gi|15642956|ref|NP_227997.1| hypothetical protein TM0182 [Thermotoga maritima MSB8]
 gi|4980678|gb|AAD35275.1|AE001703_4 conserved hypothetical protein [Thermotoga maritima MSB8]
          Length = 397

 Score = 57.4 bits (137), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 54/197 (27%), Positives = 87/197 (44%), Gaps = 24/197 (12%)

Query: 174 RGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKL-IDNGVCEITLLGQNV 232
           +G+   + I  GC   C +C  P   G  +      VV    KL + +G      +  N 
Sbjct: 137 KGIYMPIEITRGCPFSCAYCQTPIIAGRRVRHRDVDVVVHYAKLGVKHGRKLARFIAPNS 196

Query: 233 NAWRGK-GLDGEKCTFSDLLYSLSEIKGLVRLRYTT----SHPRDMSDCLIKAHGDLDVL 287
             +  K G+        +LLY L ++ G+  + + T      P  ++D ++K      V+
Sbjct: 197 FGYGSKNGVTPNVEKIEELLYGLKKV-GIEEIYFGTFPSEVRPESVTDEVLK------VV 249

Query: 288 MPYLH-----LPVQSGSDRILKSMNRRHTAYEYRQIIDRI--RSVRPDIAISSDFIVGFP 340
             Y++     +  QSGSDRILK + R HT  +  + I++I      P +    DFI GFP
Sbjct: 250 KKYVNNRSIVIGAQSGSDRILKIIKRGHTVEQVEEAIEKISLHGFIPHV----DFIFGFP 305

Query: 341 GETDDDFRATMDLVDKI 357
            ET++D   T   + KI
Sbjct: 306 FETEEDVEKTFSFIVKI 322


>gi|332157937|ref|YP_004423216.1| hypothetical protein PNA2_0294 [Pyrococcus sp. NA2]
 gi|331033400|gb|AEC51212.1| hypothetical protein PNA2_0294 [Pyrococcus sp. NA2]
          Length = 423

 Score = 57.0 bits (136), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 54/210 (25%), Positives = 96/210 (45%), Gaps = 26/210 (12%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK 238
           + I  GC   C +C  PY +G  +  R + Q+V  +R++ D     +  +  N  A+   
Sbjct: 167 MEISRGCPFGCYYCQTPYAKGFRMRHRPIDQIVKYSRRMKD-----MRYITPNAFAYGSP 221

Query: 239 G--LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY-----L 291
           G  L  EK     LL +L  ++   R  +  + P ++    +     +++L+ Y     L
Sbjct: 222 GGILKVEKV--EALLKALQPLRREGRRLFYGTFPSEVRPDFV-TRETVELLIDYTDTRRL 278

Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR-SVRPDIAISSDFIVGFPGETDDDFRAT 350
            +  QSG D +LK+M+R H       +++ +  ++   +    DFIVG P ET +  R +
Sbjct: 279 AIGAQSGDDAMLKAMHRVHKV---EHVVNAVELALEYGLEPVVDFIVGLPNETPESQRKS 335

Query: 351 MDLVDKI----GYAQAFSFKYSPRLGTPGS 376
           ++L+  I    G  +A  F   P  GTP +
Sbjct: 336 IELMKWIIRKGGKVRAHYF--MPLPGTPWA 363


>gi|170288563|ref|YP_001738801.1| radical SAM domain-containing protein [Thermotoga sp. RQ2]
 gi|170176066|gb|ACB09118.1| Radical SAM domain protein [Thermotoga sp. RQ2]
          Length = 397

 Score = 56.6 bits (135), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 54/197 (27%), Positives = 87/197 (44%), Gaps = 24/197 (12%)

Query: 174 RGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKL-IDNGVCEITLLGQNV 232
           +G+   + I  GC   C +C  P   G ++      VV    KL + +G      +  N 
Sbjct: 137 KGIYMPIEITRGCPFSCAYCQTPIIAGRQVRHRDVDVVVHYAKLGVKHGRKLARFIAPNS 196

Query: 233 NAWRGK-GLDGEKCTFSDLLYSLSEIKGLVRLRYTT----SHPRDMSDCLIKAHGDLDVL 287
             +  K G+        +LLY L  + G+  + + T      P  ++D ++K      V+
Sbjct: 197 FGYGSKNGVTPNVEKIEELLYGLKRV-GIEEIYFGTFPSEVRPESVTDEVLK------VV 249

Query: 288 MPYLH-----LPVQSGSDRILKSMNRRHTAYEYRQIIDRI--RSVRPDIAISSDFIVGFP 340
             Y++     +  QSGSDRILK + R HT  +  + I++I      P +    DFI GFP
Sbjct: 250 KKYVNNRSIVIGAQSGSDRILKIIKRGHTVEQVEEAIEKISLHGFIPHV----DFIFGFP 305

Query: 341 GETDDDFRATMDLVDKI 357
            ET++D   T   + KI
Sbjct: 306 FETEEDVEKTFSFIVKI 322


>gi|148269877|ref|YP_001244337.1| radical SAM domain-containing protein [Thermotoga petrophila RKU-1]
 gi|61657399|emb|CAI44315.1| hypothetical protein [Thermotoga petrophila]
 gi|147735421|gb|ABQ46761.1| Radical SAM domain protein [Thermotoga petrophila RKU-1]
          Length = 397

 Score = 56.6 bits (135), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 54/197 (27%), Positives = 87/197 (44%), Gaps = 24/197 (12%)

Query: 174 RGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKL-IDNGVCEITLLGQNV 232
           +G+   + I  GC   C +C  P   G ++      VV    KL + +G      +  N 
Sbjct: 137 KGIYMPIEITRGCPFSCAYCQTPIIAGRQVRHRDVDVVVHYAKLGVKHGRKLARFIAPNS 196

Query: 233 NAWRGK-GLDGEKCTFSDLLYSLSEIKGLVRLRYTT----SHPRDMSDCLIKAHGDLDVL 287
             +  K G+        +LLY L  + G+  + + T      P  ++D ++K      V+
Sbjct: 197 FGYGSKNGVTPNVEKIEELLYGLKRV-GIEEIYFGTFPSEVRPESVTDEVLK------VV 249

Query: 288 MPYLH-----LPVQSGSDRILKSMNRRHTAYEYRQIIDRI--RSVRPDIAISSDFIVGFP 340
             Y++     +  QSGSDRILK + R HT  +  + I++I      P +    DFI GFP
Sbjct: 250 KKYVNNRSIVIGAQSGSDRILKIIKRGHTVEQVEEAIEKISLHGFIPHV----DFIFGFP 305

Query: 341 GETDDDFRATMDLVDKI 357
            ET++D   T   + KI
Sbjct: 306 FETEEDVEKTFSFIVKI 322


>gi|291286606|ref|YP_003503422.1| Radical SAM domain protein [Denitrovibrio acetiphilus DSM 12809]
 gi|290883766|gb|ADD67466.1| Radical SAM domain protein [Denitrovibrio acetiphilus DSM 12809]
          Length = 780

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 87/186 (46%), Gaps = 24/186 (12%)

Query: 177 TAFLTIQEGCDKFCTFCVVPYTRGIEIS-RSLSQVVDEARKLIDNGVCEITLLGQNVNAW 235
           TA +    GC+  C FCV P    + I   S+  V++E + L   G+  + +   N  A+
Sbjct: 187 TACIFTSRGCEHVCNFCVTPLFNNMRIRFHSVDHVLEEMQYLESAGMDSLWIGDPNFTAY 246

Query: 236 RGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY--LH- 292
           R + ++  +           +I   +R+ +      DM D       DL  LM    LH 
Sbjct: 247 RSRTVELME----------QKINRGIRIPFWCQTRVDMVD------KDLLKLMQKAGLHC 290

Query: 293 --LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
               ++SGSD+IL +M++  +   + +I+   +S+  ++ + S  + G PGET +D R T
Sbjct: 291 IGFGLESGSDKILNTMHKEVSISRFHEIVTYAQSLGINVELFS--MYGQPGETYEDARKT 348

Query: 351 MDLVDK 356
           + +V K
Sbjct: 349 ISIVQK 354


>gi|110773695|ref|XP_396696.3| PREDICTED: CDKAL1-like protein-like [Apis mellifera]
          Length = 264

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 80/186 (43%), Gaps = 23/186 (12%)

Query: 22  IVP--QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEK 79
           I+P  Q  +VK++GC  N  DS  M     + GY+   +   ADL +LN+C ++  A + 
Sbjct: 55  IIPGTQTIYVKTWGCTHNNSDSEYMAGQLAAYGYKLTENKYKADLWLLNSCTVKSPAED- 113

Query: 80  VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL 139
                   RN   +  K G    VVVAGCV Q   +    +      ++G Q   R+ E+
Sbjct: 114 ------HFRNEIEAGKKIGKH--VVVAGCVPQGAPKSSFLQG---LSMIGVQQIDRVVEV 162

Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGY-----NRKRGVTAFLTIQEGCDKFCTFCV 194
           +E    G    +T   ++ K E    + G        R+  +   + I  GC   CT+C 
Sbjct: 163 VEETLKG----NTVRFLQQKKEAGKKIGGASLSLPKVRRNPLIEIIAINTGCLNQCTYCK 218

Query: 195 VPYTRG 200
             + RG
Sbjct: 219 TKHARG 224


>gi|320012974|gb|ADW07823.1| Radical SAM domain protein [Streptomyces flavogriseus ATCC 33331]
          Length = 513

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 51/90 (56%), Gaps = 10/90 (11%)

Query: 293 LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352
           L ++SGSDR+L++M++R  A    ++  R+  VR  I +   FI+GFPGET DD  AT+ 
Sbjct: 349 LGIESGSDRVLRAMDKRIDAAMTERVAQRL--VRHGIGVKGYFILGFPGETHDDIAATVR 406

Query: 353 LVDKI--------GYAQAFSFKYSPRLGTP 374
            +  +        G  +A  F++ P  GTP
Sbjct: 407 HIRNLWAIADSSPGEVRASVFEFRPYPGTP 436


>gi|261884111|ref|ZP_06008150.1| hypothetical protein CfetvA_02356 [Campylobacter fetus subsp.
           venerealis str. Azul-94]
          Length = 209

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 80/162 (49%), Gaps = 7/162 (4%)

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           Y T+   ++ D +I +   ++    Y  +P+Q  +D +LK M R  +    ++++ ++R+
Sbjct: 45  YPTTASMELIDKIIASPKFVN----YFDMPIQHINDDMLKIMRRGSSKERLKELLTKMRA 100

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             P   + +  I+G PGET + F    D + +  + +  +F YS   GT    M EQ+  
Sbjct: 101 A-PKSFLRTGIIIGHPGETGERFDELCDFLTEFKFDRISAFAYSKEEGTLAYEM-EQIPS 158

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKH-GKEK 425
               +RL  ++K +++Q      + V ++I+V I     KEK
Sbjct: 159 KTITKRLNTIEKIIKKQIEGSFKSLVREVIKVQINAQAAKEK 200


>gi|154150867|ref|YP_001404485.1| radical SAM domain-containing protein [Candidatus Methanoregula
           boonei 6A8]
 gi|153999419|gb|ABS55842.1| Radical SAM domain protein [Methanoregula boonei 6A8]
          Length = 369

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 71/270 (26%), Positives = 107/270 (39%), Gaps = 29/270 (10%)

Query: 98  GGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVE 157
           G   + +  G  A A   E+   +  V  VVG +  Y LP LL     G        +  
Sbjct: 58  GAGCITIAGGPHATACWHEVAEYTDYV--VVG-EGEYTLPALLADLEAGGSCRIPGVATR 114

Query: 158 DKFE--RLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEA 214
           + +E  + S+    Y     V  ++ I  GC   C +C  P   G  +  RS+ ++   A
Sbjct: 115 EGYEPVKSSVRLDAYPAFSEVKGYVEISRGCPFACGYCQTPQIFGHCMRHRSIDEIAKYA 174

Query: 215 RKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMS 274
                N   +   +  N  A+   G DG    F  +   L +IK  +      S  R   
Sbjct: 175 -----NRYGQARFVSPNAFAY---GSDGIHPRFDKIERLLQKIKKEIFFGTFPSEVRPEF 226

Query: 275 DCLIKAHGDLDVLMPY-----LHLPVQSGSDRILKSMNRRHTAYEYRQIID--RIRSVRP 327
            C       L ++  Y     LH   QSGSD +LK + R HT  +     +   +  + P
Sbjct: 227 VC----EKSLALISEYCTNTKLHFGAQSGSDAVLKRLRRGHTVDDAIAAAELCAVAGITP 282

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKI 357
            I    DFIVGFP ETD+D  AT+ ++  +
Sbjct: 283 VI----DFIVGFPFETDEDQEATITVIKDL 308


>gi|289191984|ref|YP_003457925.1| Radical SAM domain protein [Methanocaldococcus sp. FS406-22]
 gi|288938434|gb|ADC69189.1| Radical SAM domain protein [Methanocaldococcus sp. FS406-22]
          Length = 426

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 57/210 (27%), Positives = 94/210 (44%), Gaps = 24/210 (11%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDNGVCEITLLGQNVNAW--- 235
           + I  GC   C FC  P   G  +  RS+  +      + +  + +I  +  N   +   
Sbjct: 177 IEITRGCPYGCYFCQTPRIFGKNVRHRSIENICKYVEIMAERNLKDIRFITPNAFGYGSK 236

Query: 236 RGKGLDGEKCTFSDLLYSLSEIKGLV-RLRYTT-------SHPRDMSDCLIKAHGDLDVL 287
            GK L+ +K     LL ++ EI G   R+ + T        H  D +  LI  + D   L
Sbjct: 237 DGKTLNIDKV--EKLLENIREILGNNGRIFFGTFPSEVRPEHVNDETVDLILKYADNKSL 294

Query: 288 MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDF 347
           +    +  QSGS RIL   +R HT  +    +    +++  I++S DFI G PGET++D 
Sbjct: 295 V----VGAQSGSQRILDLCHRGHTVEDIYNAV--TTAIKKGISVSLDFIFGLPGETEEDV 348

Query: 348 RATMDLVD---KIGYAQAFSFKYSPRLGTP 374
             T+ ++    K+G A+  +  + P   TP
Sbjct: 349 EKTIKVMKDLIKMG-AKIHAHTFMPLPQTP 377


>gi|281412242|ref|YP_003346321.1| Radical SAM domain protein [Thermotoga naphthophila RKU-10]
 gi|281373345|gb|ADA66907.1| Radical SAM domain protein [Thermotoga naphthophila RKU-10]
          Length = 397

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 54/197 (27%), Positives = 86/197 (43%), Gaps = 24/197 (12%)

Query: 174 RGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKL-IDNGVCEITLLGQNV 232
           +G+   + I  GC   C +C  P   G  +      VV    KL + +G      +  N 
Sbjct: 137 KGIYMPIEITRGCPFSCAYCQTPIIAGKRVRHRDVDVVVHYAKLGVKHGRRLARFIAPNS 196

Query: 233 NAWRGK-GLDGEKCTFSDLLYSLSEIKGLVRLRYTT----SHPRDMSDCLIKAHGDLDVL 287
             +  K G+        +LLY L  + G+  + + T      P  ++D ++K      V+
Sbjct: 197 FGYGSKNGVTPNVEKIEELLYELKRV-GIEEIYFGTFPSEVRPESVTDEVLK------VV 249

Query: 288 MPYLH-----LPVQSGSDRILKSMNRRHTAYEYRQIIDRI--RSVRPDIAISSDFIVGFP 340
             Y++     +  QSGSDRILK + R HT  +  + I++I      P +    DFI GFP
Sbjct: 250 KKYVNNRSIVIGAQSGSDRILKIIKRGHTVKQVEEAIEKISLHGFIPHV----DFIFGFP 305

Query: 341 GETDDDFRATMDLVDKI 357
            ET++D   T   + KI
Sbjct: 306 FETEEDVEKTFSFIVKI 322


>gi|305664219|ref|YP_003860507.1| Radical SAM domain protein [Ignisphaera aggregans DSM 17230]
 gi|304378788|gb|ADM28627.1| Radical SAM domain protein [Ignisphaera aggregans DSM 17230]
          Length = 436

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 59/225 (26%), Positives = 100/225 (44%), Gaps = 15/225 (6%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW---R 236
           + I  GC   C FC V Y  G+   RS+ ++V  +  ++ +G+ ++  +  N   +    
Sbjct: 173 IEIMRGCSASCYFCQVTYLYGVPRYRSIERIVYYSEIMLSSGLKDLRFIAPNSLGYGSSN 232

Query: 237 GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT----SHPRDMSDCLIKAHGDLDVLMPYLH 292
           G   D +       L  L+   G  R+ + T      P  + +  I+      V    + 
Sbjct: 233 GIKPDSKVLDLLHQLRLLANRYG-GRIFFGTFPSEVRPDSVEEDFIREIRRF-VDNKRII 290

Query: 293 LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV-RPDIAISSDFIVGFPGETDDDFRATM 351
           +  QSGS+RILK ++R HT+     I++ ++ + +    +  D I GFP ET DD   TM
Sbjct: 291 VGAQSGSNRILKIIHRGHTS---EDIVNAVQILTKYGFEVDIDLIFGFPFETKDDIEETM 347

Query: 352 DLVDKIG-YAQAFSFK-YSPRLGTPGSNMLEQVDENVKAERLLCL 394
            L++K+  Y   F    + P  GTP   +L    ++    RL  L
Sbjct: 348 KLIEKLKEYRTRFHLHTFIPLPGTPFIKLLPSPIDDALKHRLYKL 392


>gi|217967140|ref|YP_002352646.1| radical SAM protein [Dictyoglomus turgidum DSM 6724]
 gi|217336239|gb|ACK42032.1| Radical SAM domain protein [Dictyoglomus turgidum DSM 6724]
          Length = 405

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 58/209 (27%), Positives = 92/209 (44%), Gaps = 22/209 (10%)

Query: 180 LTIQEGCDKFCTFCVVPYT-RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG- 237
           + I  GC   C FC  P    G+   RS  +++D  + +    + +I  +  N  A+   
Sbjct: 156 IEISRGCPYGCYFCQTPRIFGGVMRHRSTEKILDIVKIMNKLNLKDIRFITPNAFAYGSL 215

Query: 238 KGLDGEKCTFSDLLYSLSEI---KGLVRLRYTTS-----HPRDMSDCLIKAHGDLDVLMP 289
            G D       +LLY +  I   KG +      S     H R+    L+K + D D L+ 
Sbjct: 216 TGKDVNLRRLEELLYGIRNIIGDKGRIFFGSFPSEVRPEHVREEILELLKTYADNDNLV- 274

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYE-YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFR 348
              +  QSGS RIL   +R HT  + YR +     ++R  +  + DFI G P E + D  
Sbjct: 275 ---IGAQSGSQRILDLAHRGHTVEDVYRAVS---LTLRYGLKANVDFIFGLPYEEERDIE 328

Query: 349 ATMDLVD---KIGYAQAFSFKYSPRLGTP 374
            T+  ++   K+G A+  +  + P  GTP
Sbjct: 329 ETLKFIEELVKMG-ARVHAHTFMPLPGTP 356


>gi|206901875|ref|YP_002250468.1| Fe-S oxidoreductase family protein [Dictyoglomus thermophilum
           H-6-12]
 gi|206740978|gb|ACI20036.1| Fe-S oxidoreductase family protein [Dictyoglomus thermophilum
           H-6-12]
          Length = 400

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 50/205 (24%), Positives = 94/205 (45%), Gaps = 14/205 (6%)

Query: 180 LTIQEGCDKFCTFCVVPYT-RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-RG 237
           + I  GC   C FC  P    G+   RS+ +++D  + + +  + +I  +  N  A+   
Sbjct: 151 IEISRGCPYGCYFCQTPRIFGGVMRHRSVEKILDLVKVMNNLNLKDIRFVTPNAFAYGSN 210

Query: 238 KGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY-----LH 292
            G D       +LL  + ++ G     +  S P ++    +K    L+++  Y     L 
Sbjct: 211 TGKDVNLVKIEELLSGIRKVIGKKGRIFFGSFPSEVRPEHVKEE-TLELVKTYANNDNLV 269

Query: 293 LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352
           +  QSGS RIL   +R HT  +  + ++   +++ ++  + DFI G P E + D   T+ 
Sbjct: 270 IGAQSGSQRILDLSHRAHTVEDVYKAVE--LTLKYNLKANVDFIFGLPYEEEKDIEETVR 327

Query: 353 LVD---KIGYAQAFSFKYSPRLGTP 374
            ++   K+G A+  +  + P  GTP
Sbjct: 328 FIEELVKMG-AKVHAHTFMPLPGTP 351


>gi|302342467|ref|YP_003806996.1| radical SAM domain protein [Desulfarculus baarsii DSM 2075]
 gi|301639080|gb|ADK84402.1| Radical SAM domain protein [Desulfarculus baarsii DSM 2075]
          Length = 556

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 67/252 (26%), Positives = 106/252 (42%), Gaps = 43/252 (17%)

Query: 178 AFLTIQEGCDKFCTFCVVP-YTRGIEISRSLSQVVDEARKLID-NGVCEITLLGQNVNAW 235
           A +T   GC   C FC      RG    R ++ V+DE R L+D +GV  I    +N++  
Sbjct: 217 AAITASRGCPYHCAFCSSQNMWRGHWRRRRVALVIDEIRFLMDRHGVNTIVFNDENISV- 275

Query: 236 RGKGLDGEKCTFSDLLYSLSEIK------GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMP 289
                   +  F +LL  L+++       G + +R +   PR + +      G       
Sbjct: 276 -------NRAWFLELLGELAKLGVTWISGGGLSVR-SLDDPRVVDEMYRSGVG------- 320

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
             +L  +S SDR L+ + +  T  E  ++I+ +R  R D  ++  FI GFP ET  D R 
Sbjct: 321 LFNLAFESTSDRTLRRIGKALTTEESARVIELVRQ-RGDGYVTGFFISGFPFETMADVRD 379

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDAC 409
            +D    +       + + P    PG+ + EQ           CLQ+ L E   +F DA 
Sbjct: 380 NLDRAGALDIDWKCYYCFQP---FPGAPLYEQ-----------CLQEGLIE---AF-DAN 421

Query: 410 VGQIIEVLIEKH 421
            G+       KH
Sbjct: 422 YGENFHAPQLKH 433


>gi|312114808|ref|YP_004012404.1| radical SAM protein [Rhodomicrobium vannielii ATCC 17100]
 gi|311219937|gb|ADP71305.1| Radical SAM domain protein [Rhodomicrobium vannielii ATCC 17100]
          Length = 454

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 54/206 (26%), Positives = 91/206 (44%), Gaps = 24/206 (11%)

Query: 174 RGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS-RSLSQVVDEARKLIDNGVCEITLLGQNV 232
           RG++  + +  GC   C+FC V  T G +   +S ++VVDE  +L D+   E      ++
Sbjct: 211 RGIS--MIVSRGCPYNCSFCAVQQTMGRKWRFKSPAKVVDEVIRLRDDHGIEGVWFKDSI 268

Query: 233 ----NAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLM 288
                AW       E C       +  E + L R+         M    +KA G     +
Sbjct: 269 FNLKPAW-----TKEFCRLMIERKAGIEWQALTRINLLDEDELIM----MKAAG-----L 314

Query: 289 PYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFR 348
             + L ++SGS + L  +N++ T     QI +++   +  + +   F++G PGE +DD R
Sbjct: 315 TQIDLGIESGSPKSLVRLNKKITV---DQIKEKVALAKRHLRVFGFFMIGIPGEDEDDVR 371

Query: 349 ATMDLVDKIGYAQAFSFKYSPRLGTP 374
            T DL   +   +     YSP  G+P
Sbjct: 372 QTFDLAKSLELDRWSWSIYSPLPGSP 397


>gi|20094225|ref|NP_614072.1| Fe-S oxidoreductase family protein [Methanopyrus kandleri AV19]
 gi|19887253|gb|AAM02002.1| Fe-S oxidoreductase family protein [Methanopyrus kandleri AV19]
          Length = 402

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 57/210 (27%), Positives = 96/210 (45%), Gaps = 17/210 (8%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRG 237
           + I  GC   C FC V    G ++  RS+  VV   R+ ++  G      +  +  A+  
Sbjct: 155 VEITRGCPWGCAFCQVTRLFGPKLRHRSVEDVVRWVRRGVERYGHTFARFVAPDALAYGS 214

Query: 238 K-GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY-----L 291
             G+  +      LL SL  I+GL ++ +  S P ++    I     ++++  Y     +
Sbjct: 215 PDGIRLKPDRVKRLLRSLRSIEGLEKV-FFGSFPAELRPDSIAKGDAIELIAHYADNERV 273

Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351
           ++  QSGS+R+LK + R HT  +    +++   V   +    DFI G PGET++D  A++
Sbjct: 274 NIGAQSGSERVLKRIERGHTVEDVEVAVEKALEV--GLKPVVDFIFGLPGETEEDQLASV 331

Query: 352 DLVDKI----GYAQAFSFKYSPRLGTPGSN 377
           +L   I    G  +   F   P  GTP  N
Sbjct: 332 ELARWIIKRGGEVRLHYFMPLP--GTPLEN 359


>gi|237803859|ref|ZP_04591444.1| ribosomal protein S12 methylthiotransferase [Pseudomonas syringae
           pv. oryzae str. 1_6]
 gi|237805467|ref|ZP_04592171.1| ribosomal protein S12 methylthiotransferase [Pseudomonas syringae
           pv. oryzae str. 1_6]
 gi|331025839|gb|EGI05895.1| ribosomal protein S12 methylthiotransferase [Pseudomonas syringae
           pv. oryzae str. 1_6]
 gi|331026574|gb|EGI06629.1| ribosomal protein S12 methylthiotransferase [Pseudomonas syringae
           pv. oryzae str. 1_6]
          Length = 141

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 45/147 (30%), Positives = 78/147 (53%), Gaps = 19/147 (12%)

Query: 335 FIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ--VDENVKA---E 389
           FIVGFPGET++DF+  +D + +    +   F+YSP  G P +N+L+   V +++K    +
Sbjct: 1   FIVGFPGETEEDFQYLLDWLTEAQLDRVGCFQYSPVEGAP-ANLLDAAIVPDDIKQDRWD 59

Query: 390 RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVVL----N 441
           R +  Q+ +   ++      +G+ IEVLI++   ++G  VGR    +P +   V     +
Sbjct: 60  RFMAHQQAISAARLQMK---IGKEIEVLIDEV-DDRGA-VGRCFFDAPEIDGNVFIGLED 114

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
             N   GD I  R+TD     L+ E++
Sbjct: 115 GSNVQPGDKIMCRVTDADEYDLWAEML 141


>gi|124026950|ref|YP_001012270.1| radical SAM family Fe-S oxidoreductase [Hyperthermus butylicus DSM
           5456]
 gi|123977644|gb|ABM79925.1| Fe-S oxidoreductase, Radical SAM superfamily [Hyperthermus
           butylicus DSM 5456]
          Length = 528

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 82/332 (24%), Positives = 138/332 (41%), Gaps = 45/332 (13%)

Query: 170 YNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLG 229
           + R  G+     + E     C +C V    G   SRS+  V +E ++LID GV  I L G
Sbjct: 202 FPRLDGILPPELLPEKPIPGCAYCSVIPLYGYARSRSIDHVYEEVKELIDQGVHRIVLSG 261

Query: 230 QNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL-RYTTSHPRDMSDCL------IKAHG 282
            +   + G+    E     D        K +  L R  T+ P   S  +      IK + 
Sbjct: 262 PDFLDY-GRDWLVEPSPLLDPRNPPPNTKAIAELLRRITAIPEVSSGEVSVMVENIKPNL 320

Query: 283 DLD----VLMPYL-----HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR--SVRPDIAI 331
             D    VL  YL     H+  ++G +++L+++ R  T YE  + +  +R   +RP + I
Sbjct: 321 VNDEVVLVLGRYLRGTPVHIGAETGDNKLLEALGRSATVYEVVKAVRLLRRHGLRPYVYI 380

Query: 332 SSDFIVGFPGETDDDFRATMDLVDKI---GYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
               +   PGET    R T++ ++K+   G  +   +K++P    P S + +    N   
Sbjct: 381 ----MYCLPGETSRTIRQTVEYMEKLYNAGAEKITVYKFTP---LPLSYLHKLAGTNYDT 433

Query: 389 ERLLCLQKKLREQQVS--FNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHN 446
           +       +LR ++++       +G  I V+I   G  +G+     P     V+     +
Sbjct: 434 KCPNPHPVRLRAEEINKRAKRRLIGLRIRVIIV--GYYRGRRPLGYPLKHGPVVLLDRGS 491

Query: 447 IGDIIKVRITDV------------KISTLYGE 466
           IGD++  RI DV            +I TL GE
Sbjct: 492 IGDLVDARIVDVISDRMVEATVIKRIKTLAGE 523


>gi|297526282|ref|YP_003668306.1| Radical SAM domain protein [Staphylothermus hellenicus DSM 12710]
 gi|297255198|gb|ADI31407.1| Radical SAM domain protein [Staphylothermus hellenicus DSM 12710]
          Length = 450

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 50/195 (25%), Positives = 87/195 (44%), Gaps = 27/195 (13%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDNGVCEITLLGQNVNAW--- 235
           + I  GC   C +C V Y  G  +  RS+  +V+    +++  + +I  +  +  A+   
Sbjct: 175 IEISRGCPYGCKYCQVSYMHGFFMRHRSIDNIVEYTGCMVEKNIRDIRFISPDSLAYGLK 234

Query: 236 ---RGKGLDGEKCTFSDLLYSLSEIKGL----------VRLRYTTSHPRDMSDCLIKAHG 282
              R   LD  +   S L     E KG           VR  + T   RD +  L K   
Sbjct: 235 TMSREPRLDLIEELLSRLYKKYVERKGARIFYGSFPSEVRPEHLT---RDAARILRKYVA 291

Query: 283 DLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGE 342
           + +++     L  Q+GSDR+LK + R+H+  +    ++   +V+     + D+I+G PGE
Sbjct: 292 NKNII-----LGAQTGSDRLLKLIGRKHSIEDVYNAVEN--AVKYGFIPNVDYIIGLPGE 344

Query: 343 TDDDFRATMDLVDKI 357
           T DD   T+  + K+
Sbjct: 345 TRDDLYETIRSIKKL 359


>gi|83645719|ref|YP_434154.1| Fe-S oxidoreductase [Hahella chejuensis KCTC 2396]
 gi|83633762|gb|ABC29729.1| Fe-S oxidoreductase [Hahella chejuensis KCTC 2396]
          Length = 563

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 57/229 (24%), Positives = 104/229 (45%), Gaps = 29/229 (12%)

Query: 135 RLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQ--EGCDKFCTF 192
           R P+ L R  F +  V+T+Y+  ++    + +D G      ++ F++++  + C   C F
Sbjct: 206 RDPKSLLRP-FSRTPVETEYNPLEE----NPIDYGLFPPEQLSQFISLRTAKSCPYSCAF 260

Query: 193 CVVPYTRGIEISRSLSQVVDEARKLIDNG-VCEITLLGQNVNAWRGKGLDGEKCTFSDLL 251
           C  P   G   + +   V  E  ++   G V  +T L    N          K  F ++L
Sbjct: 261 CGFPQRAGAYKTLAPDLVEQELDRIAALGNVDTLTFLDDTFNV--------PKKRFKEIL 312

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDC----LIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307
             +  I+     R+ + +  D  D     L++  G   V      L ++SGSD +LK+MN
Sbjct: 313 RLM--IRKQYGFRWNSFYRSDQGDYETIQLMREAGCEGVF-----LGIESGSDAMLKNMN 365

Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
           +      + + I ++++    I+  +  IVGFPGET+D  R T  L+++
Sbjct: 366 KTARRRNFAEAIPQLQAA--GISAHASLIVGFPGETEDTIRETQSLIEQ 412


>gi|116749753|ref|YP_846440.1| radical SAM domain-containing protein [Syntrophobacter fumaroxidans
           MPOB]
 gi|116698817|gb|ABK18005.1| Radical SAM domain protein [Syntrophobacter fumaroxidans MPOB]
          Length = 434

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 73/309 (23%), Positives = 136/309 (44%), Gaps = 44/309 (14%)

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135
            AE+ Y    + R       K G  + VV+ G       EE L+     + VV  +  Y 
Sbjct: 70  TAERAYEIAAKFR-------KRG--VAVVMGGFHPTLLPEECLQH---CDAVVEGEAEYA 117

Query: 136 LPELLERARFGKRVVDTDYSVEDKFERLSIVDGG----YNRKRGVTAFLTIQ--EGCDKF 189
            PELLE  R G+  + + Y   D+F  L  +        +R++    +L +Q   GC   
Sbjct: 118 WPELLEDFRAGR--MKSRYKA-DRFHDLKNLPTPRWDLLDRRKYFVPYLPLQTTRGCPFK 174

Query: 190 CTFCVVP-YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS 248
           C+FC VP +  G    R + +V+++ ++ I  G  ++ ++  N+         G      
Sbjct: 175 CSFCEVPIFYGGTYRHRPIGEVIEDIKR-IPTG--KVQVVDDNIT--------GSHEYAR 223

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRD--MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306
           +L  ++  +       +T +  RD  + D  ++A       + ++++ ++S S + L S+
Sbjct: 224 ELFKAMIPLGVRWSCLWTINTSRDAELLDLAVRAG------VYHVNIGIESVSQKSLSSI 277

Query: 307 NRRHTAYEYRQIIDRIRSV-RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           N+R      +  ++ +R + R  I  S +F+ G   +T + F  TMD + ++    AF  
Sbjct: 278 NKRQN--RVKDYVEMLRELERRGIFYSLNFLFGLDEDTREIFAETMDFLKQVRAPMAFFN 335

Query: 366 KYSPRLGTP 374
             +PR GTP
Sbjct: 336 TVTPREGTP 344


>gi|61657478|emb|CAI44390.1| hypothetical protein [Thermotoga sp. KOL6]
          Length = 397

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 56/221 (25%), Positives = 93/221 (42%), Gaps = 35/221 (15%)

Query: 161 ERLSIVDGGYNR-----------KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSLS 208
           ERL I DG   R            + +   + I  GC   C +C  P   G  +  R + 
Sbjct: 113 ERLRIFDGLSKRINLNHYPPFLPSKRIYMPIEISRGCPFSCAYCQTPNIAGRVVRHRDVD 172

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGK-GLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
            ++  A   + +G      +  N   +  K G+        +LL+ L  + G+  + + T
Sbjct: 173 VILHYANLGVKHGRKLARFIASNSFGYGSKNGVTPNVEKIEELLFGLRRV-GIEEIYFGT 231

Query: 268 ----SHPRDMSDCLIKAHGDLDVLMPYLH-----LPVQSGSDRILKSMNRRHTAYEYRQI 318
                 P  ++D +      L V+  Y++     +  QSGSDR+LK + R HT  +  + 
Sbjct: 232 FPSEVRPESVTDEV------LSVIKKYVNNRSVVIGAQSGSDRVLKIIKRGHTVEQVEEA 285

Query: 319 IDRIRS--VRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
           I++I +    P +    DFI GFP ET +D   T + + KI
Sbjct: 286 IEKIAAHGFTPHV----DFIFGFPFETREDIEETFNFIVKI 322


>gi|124485623|ref|YP_001030239.1| hypothetical protein Mlab_0801 [Methanocorpusculum labreanum Z]
 gi|124363164|gb|ABN06972.1| Radical SAM domain protein [Methanocorpusculum labreanum Z]
          Length = 366

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 79/307 (25%), Positives = 122/307 (39%), Gaps = 43/307 (14%)

Query: 102 LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER----------ARFGKRVVD 151
           + +V G    A   E+   +  V V  G +T  RL   LER          A  G   + 
Sbjct: 64  ITIVGGPHPSACPNEVSLIADYVVVGEGERTLPRLLAALERGEDATKIPGVAFRGSAPIP 123

Query: 152 TDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQ 209
            D++V  D F   S + G          ++ +  GC   C +C  P   G ++  RS   
Sbjct: 124 IDHAVRLDAFPSFSRMKG----------YIELSRGCPFSCAYCQTPCLHGRKMRHRSREA 173

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSH 269
           +V  A K  D             NA+     DG       L   LS +       Y  + 
Sbjct: 174 IVSMAEKYQDARFV-------TPNAFAYGSADGRVPDVEKLRRLLSSMPK--NNIYFGTF 224

Query: 270 PRDM-SDCLIKAHGDLDVLM---PYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
           P ++  + +I+   +L         LH   QSGSD +L+ M R HT  +    ++  + V
Sbjct: 225 PSEVRPEFVIQETAELITEFCSNTKLHFGAQSGSDAVLRKMGRGHTVVDVYSALETCKKV 284

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIG-YAQAFSFKYSPRLGTP--GS---NML 379
              +    D I GFP  +D+D  AT+ LV ++  Y  A     +P  GTP  GS   ++L
Sbjct: 285 --GLTPVVDVIFGFPFASDEDEEATLSLVREVTRYGTAHVHYLTPLPGTPLEGSTPRDIL 342

Query: 380 EQVDENV 386
            +VD+ +
Sbjct: 343 PEVDKRL 349


>gi|310658010|ref|YP_003935731.1| radical sam domain-containing protein [Clostridium sticklandii DSM
           519]
 gi|308824788|emb|CBH20826.1| Radical SAM domain protein [Clostridium sticklandii]
          Length = 440

 Score = 54.3 bits (129), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 61/232 (26%), Positives = 100/232 (43%), Gaps = 38/232 (16%)

Query: 172 RKRGVTAFLTIQ--EGCDKFCTFCVVP-YTRGIEISRSLSQVVDEARKLIDNGVCEITLL 228
           + + +  FL +Q   GC   C+FC V    +G  I R L +VV + +++ D G  +I LL
Sbjct: 155 KGKKIGDFLPVQAGRGCPNSCSFCSVSCLYKGRYIKRPLEEVVRDIKQIKDLGFKKILLL 214

Query: 229 GQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLM 288
             N+              FSD  Y    +   + L  T      MS C I    D D+L 
Sbjct: 215 DDNI--------------FSDRDYLHKLLDTFIELNVTW-----MSQCEITIGHDNDLLQ 255

Query: 289 PY-------LHLPVQSGSDRILKSMNRRHT-AYEYRQIIDRIRSVRPDIAISSDFIVGFP 340
                    L   ++S +   L  M++      +Y  +I  IR  +  I +S++ +VG  
Sbjct: 256 KLYKSGCQTLSFGLESITKESLDKMDKSWAKPSDYDYLIQNIR--KHGIDVSTEMVVGAE 313

Query: 341 GETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLL 392
           G+T +  R T D ++K   +    +  +P    PG+   EQ++   KA RL+
Sbjct: 314 GDTLESIRKTKDFIEKNKISVPRFYILTP---FPGTRFFEQIE---KAGRLV 359


>gi|150399807|ref|YP_001323574.1| radical SAM domain-containing protein [Methanococcus vannielii SB]
 gi|150012510|gb|ABR54962.1| Radical SAM domain protein [Methanococcus vannielii SB]
          Length = 372

 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 86/344 (25%), Positives = 145/344 (42%), Gaps = 47/344 (13%)

Query: 80  VYSFLGRIRNLKNSRIKE----GGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135
           +YSF+   RN     IKE      D++++  G       ++ +       V+VG +    
Sbjct: 43  IYSFMSMQRNEVLKEIKEIKRLKKDIILIAGGAHPSGAPKDTVDMG-FEYVIVG-EGEIT 100

Query: 136 LPELLERARFGKRVVDTDYSVE--DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC 193
           LP+L+   + GK   D     E  + FE  +        K    A + I  GC   C FC
Sbjct: 101 LPKLVNLIKTGKSPKDAIIFGEPVENFEEFN--------KIWPLAPIEITRGCPYNCRFC 152

Query: 194 VVPYTRGIEI-SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-GLDGEKCTFSDLL 251
             P   G  +  RS+  +V   + + D     I  +  N  ++  K G   +     +L+
Sbjct: 153 QTPQIFGKNVRHRSIDSIVKIVKTMGD-----IRFVTPNAFSYGSKTGTKPDIEKLENLM 207

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY-----LHLPVQSGSDRILKSM 306
             L EIK   RL + T  P ++    + +   L+++  Y     +H   QSGS+ +L  +
Sbjct: 208 KKLFEIKN--RLFFGT-FPSEVRPEFVTSK-TLELVNKYCDNTFIHFGAQSGSNEVLNYI 263

Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISS--DFIVGFPGETDDDFRATMDL----VDKIGYA 360
            R H+  +   II+ + + R + A++   DFI GFP E +   + ++DL    + K G  
Sbjct: 264 RRGHSVLD---IINAVENCR-EYALTPKVDFIFGFPDENEFQRKESIDLMKYIIKKNGKV 319

Query: 361 QAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVS 404
            A  F   P  GT   N      E ++ E L  L K  ++ Q++
Sbjct: 320 HAHYF--MPLCGTYFEN---NNPEPLEKEVLDILGKMAKKGQIT 358


>gi|303286519|ref|XP_003062549.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226456066|gb|EEH53368.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 87

 Score = 53.5 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 40/71 (56%)

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
           +++D +    P I I++D I GFPGET++D+  TM L  K  + +    ++ PR GTP +
Sbjct: 1   KVVDTLLERVPGITIATDIICGFPGETEEDWEMTMALCRKYDFIELHLSQFYPRPGTPAA 60

Query: 377 NMLEQVDENVK 387
            M +     VK
Sbjct: 61  RMKKVNSREVK 71


>gi|266621756|ref|ZP_06114691.1| tRNA modification enzyme, MiaB family [Clostridium hathewayi DSM
           13479]
 gi|288866553|gb|EFC98851.1| tRNA modification enzyme, MiaB family [Clostridium hathewayi DSM
           13479]
          Length = 112

 Score = 53.5 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 32/109 (29%), Positives = 54/109 (49%), Gaps = 8/109 (7%)

Query: 33  GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92
           GC++N Y++  M+ +    GYE V   + AD+ ++NTC +   A  K    L R + +  
Sbjct: 10  GCKVNSYETEAMQQLLEEAGYEIVPFAEGADVYIINTCSVTNIADRKSRQMLHRAKKMNP 69

Query: 93  SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             +       VV AGC  Q+ G+  L+    V++V+G      L ++LE
Sbjct: 70  QAV-------VVAAGCYVQSAGDA-LKMDEAVDLVIGNNKKTELVKILE 110


>gi|529098|dbj|BAA07117.1| P-methylase [Streptomyces hygroscopicus]
          Length = 550

 Score = 53.5 bits (127), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 50/188 (26%), Positives = 78/188 (41%), Gaps = 20/188 (10%)

Query: 175 GVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA 234
           G T        C   C FC  P   G      LS V  E  +L D GV  +  +    N 
Sbjct: 244 GPTLSTRTARSCAFSCAFCDYPERAGALTLADLSTVERELEELADLGVKRVAFIDDTFNV 303

Query: 235 WRGKGLDGEKCTFSDLLYSLSE----IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY 290
              +        F DL   L      I+     R   +   D+ D +  + G   VL   
Sbjct: 304 PMRR--------FKDLCRMLVRRDFGIEWFSYFRCGHARDPDVYDLMYDS-GCRGVL--- 351

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
             L ++SG D++L +M++R T   Y+  I+++++    I   + F+VGFPGE+    R T
Sbjct: 352 --LGIESGDDQVLLNMDKRATTAHYQNGIEQLKAR--GIFTHASFVVGFPGESPQTVRNT 407

Query: 351 MDLVDKIG 358
           +D ++  G
Sbjct: 408 IDFINSAG 415


>gi|315609042|ref|ZP_07884012.1| coproporphyrinogen dehydrogenase [Prevotella buccae ATCC 33574]
 gi|315249246|gb|EFU29265.1| coproporphyrinogen dehydrogenase [Prevotella buccae ATCC 33574]
          Length = 372

 Score = 53.1 bits (126), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 44/127 (34%), Positives = 67/127 (52%), Gaps = 14/127 (11%)

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
           +P D++D    A   L V    + +  Q+ SD  L+ ++RRH+A E    ++R+R  R D
Sbjct: 92  NPDDVTDDFCHALARLPV--NRVSMGAQTFSDARLRFLHRRHSAAEVVTAVERLR--RAD 147

Query: 329 I-AISSDFIVGFPGETDDDFRATMD--LVDKIGYAQAFSFKYSPRLGTPGSNML-----E 380
           I  IS D + GFPGET  D++  +D  L+    +  A+S  Y    GTP   ML     E
Sbjct: 148 IRNISLDLMFGFPGETPADWQTDIDNALLLHPEHLSAYSLMYEE--GTPLHRMLTRGEVE 205

Query: 381 QVDENVK 387
           ++DE+V 
Sbjct: 206 EIDEDVS 212


>gi|207093503|ref|ZP_03241290.1| putative ATP-binding protein [Helicobacter pylori HPKX_438_AG0C1]
          Length = 82

 Score = 53.1 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 22/51 (43%), Positives = 33/51 (64%)

Query: 170 YNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN 220
           + +K  + + L I  GCDK C +C+VP+TRG EIS  +  ++ EA KL +N
Sbjct: 32  FEKKAQIRSLLNISIGCDKKCAYCIVPHTRGKEISIPMDLILKEAEKLANN 82


>gi|326391529|ref|ZP_08213061.1| Radical SAM domain protein [Thermoanaerobacter ethanolicus JW 200]
 gi|325992410|gb|EGD50870.1| Radical SAM domain protein [Thermoanaerobacter ethanolicus JW 200]
          Length = 444

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 48/84 (57%), Gaps = 2/84 (2%)

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
           + L ++SGS RIL+ ++R +T YE  + +  I ++   I +++ F+VG P ET DD   T
Sbjct: 299 IFLGIESGSPRILRLLHRNYTPYEVIEKVGYIENL--GIKVTASFMVGIPFETKDDVDET 356

Query: 351 MDLVDKIGYAQAFSFKYSPRLGTP 374
             L+  I  ++     ++P  GTP
Sbjct: 357 FKLIKNIPASEIQCHIFTPFPGTP 380


>gi|73668263|ref|YP_304278.1| Fe-S oxidoreductase [Methanosarcina barkeri str. Fusaro]
 gi|72395425|gb|AAZ69698.1| Fe-S oxidoreductase [Methanosarcina barkeri str. Fusaro]
          Length = 377

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 64/228 (28%), Positives = 98/228 (42%), Gaps = 33/228 (14%)

Query: 178 AFLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR 236
           A + I  GC   C +C  P   G E+  RS+  +V  A    D     +  +  N     
Sbjct: 144 APIEISRGCPWGCKYCQTPRLFGREVRHRSVDSIVKNAGYYND-----LRFIASNAF--- 195

Query: 237 GKGLDGEKCTFSDLLYSLSEIKGLVRLR-YTTSHPRDMSDCLIKAHGDLDVLMPY----- 290
           G G DG    F  +   LS +  L   + +  + P ++    +     ++++  Y     
Sbjct: 196 GYGSDGIHPRFDKVEKLLSALHKLPDKKIFFGTFPSEVRPEFVTDE-SVELVRKYCANNS 254

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV----RPDIAISSDFIVGFPGETDDD 346
           L L  QSGSDRILK ++R HT      + D I +V       I  + DFI G P E ++D
Sbjct: 255 LSLGAQSGSDRILKEIHRGHT------VRDSISAVECCLEHGIVPAVDFIFGLPTEAEED 308

Query: 347 FRATMDLV----DKIGYAQAFSFKYSPRLGTP-GSNMLEQVDENVKAE 389
              ++DLV     K G  +A     +P  GTP  S +  +V + V+ E
Sbjct: 309 QEKSLDLVRWICKKGGTVRAHYL--TPLPGTPYASAVPSEVSDRVRRE 354


>gi|15669680|ref|NP_248493.1| hypothetical protein MJ_1487 [Methanocaldococcus jannaschii DSM
           2661]
 gi|38258708|sp|Q58882|Y1487_METJA RecName: Full=Uncharacterized methyltransferase MJ1487
 gi|1592124|gb|AAB99497.1| conserved hypothetical protein [Methanocaldococcus jannaschii DSM
           2661]
          Length = 426

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/208 (25%), Positives = 94/208 (45%), Gaps = 20/208 (9%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDNGVCEITLLGQNVNAW--- 235
           + I  GC   C FC  P   G +I  R +  +      + +  + +I  +  N   +   
Sbjct: 177 IEITRGCPYKCYFCQTPRIFGKKIRHRDVENIYKYVEIMAERNLKDIRFITPNAFGYGSK 236

Query: 236 RGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY----- 290
            GK L+ +K     LL S+ EI G     +  + P ++    +     +D+++ Y     
Sbjct: 237 DGKTLNIDKI--EKLLESIREILGNNGRIFFGTFPSEVRPEHVNIE-TVDLILRYADNKN 293

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR-PDIAISSDFIVGFPGETDDDFRA 349
           L +  QSGS+++L+  +R HT      + + +R  R   + +  DFI G PGET++D   
Sbjct: 294 LVIGAQSGSEKVLELCHRGHTV---EDVYNAVRVARKAGLGVDVDFIFGLPGETEEDVEK 350

Query: 350 TMDLVD---KIGYAQAFSFKYSPRLGTP 374
           T+ ++    K+G A+  +  + P   TP
Sbjct: 351 TIKVMKDLIKMG-AKIHAHTFMPLPQTP 377


>gi|302822673|ref|XP_002992993.1| hypothetical protein SELMODRAFT_8469 [Selaginella moellendorffii]
 gi|300139193|gb|EFJ05939.1| hypothetical protein SELMODRAFT_8469 [Selaginella moellendorffii]
          Length = 82

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 1/68 (1%)

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           P+I I++D I GFPGET +DF   M+L+ +  + Q    ++ PR GTP + M       V
Sbjct: 6   PEIHIATDIICGFPGETSEDFDRIMELIREYTFPQVHISQFYPRPGTPAALMKRVPTLEV 65

Query: 387 KAERLLCL 394
           K +R  CL
Sbjct: 66  K-KRSRCL 72


>gi|302549803|ref|ZP_07302145.1| p-methyltransferase [Streptomyces viridochromogenes DSM 40736]
 gi|51317960|gb|AAU00085.1| p-methyltransferase [Streptomyces viridochromogenes]
 gi|68697722|emb|CAJ14051.1| P-methyltransferase [Streptomyces viridochromogenes]
 gi|302467421|gb|EFL30514.1| p-methyltransferase [Streptomyces viridochromogenes DSM 40736]
          Length = 549

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/188 (25%), Positives = 79/188 (42%), Gaps = 20/188 (10%)

Query: 175 GVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA 234
           G T        C   C FC  P   G      LS V  E  +L D GV  +  +    N 
Sbjct: 243 GPTLSTRTARSCAFSCAFCDYPERAGALTLADLSTVERELEELADMGVKRVAFIDDTFNV 302

Query: 235 WRGKGLDGEKCTFSDLLYSLSE----IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY 290
              +        F DL   L      I+     R   +   D+ D +  + G   VL   
Sbjct: 303 PMRR--------FKDLCRMLVRRDFGIEWFSYFRCGHAREPDVYDLMYDS-GCRGVL--- 350

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
             L ++SG D++L +M++R T   Y+  I+++++    I   + F++GFPGE+    + T
Sbjct: 351 --LGIESGDDQVLLNMDKRATTAHYQYGIEQLKAR--GIFTHASFVIGFPGESPQTVQNT 406

Query: 351 MDLVDKIG 358
           +D +++ G
Sbjct: 407 IDFINRAG 414


>gi|83309217|ref|YP_419481.1| Fe-S oxidoreductase [Magnetospirillum magneticum AMB-1]
 gi|82944058|dbj|BAE48922.1| Fe-S oxidoreductase [Magnetospirillum magneticum AMB-1]
          Length = 486

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 56/219 (25%), Positives = 91/219 (41%), Gaps = 28/219 (12%)

Query: 173 KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDNGVCEITLLGQN 231
           KR     +    GC   C +C  P   G +  +RS +++++E R++ D G  EI    + 
Sbjct: 205 KRVPFTTMITSRGCPARCNYCTAPTFYGNKTRARSTAKIIEELREIRDLGYREIFFRDET 264

Query: 232 VNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSD----CLIKAHGDLDVL 287
            +A++G+ +   +   S+ L       G V          DM D     L+K  G     
Sbjct: 265 FSAYKGRNMQVYETMLSENLDFTWIANGRV----------DMIDREQLALMKRAG----- 309

Query: 288 MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP-DIAISSDFIVGFPGETDDD 346
              L   V++GS  +L +  +  T     Q ++  R+ R   I   +  I G PGET D 
Sbjct: 310 CHTLKFGVETGSQMMLDTYKKGTT---IEQAVEAFRTAREVGINTHAHIIFGGPGETLDT 366

Query: 347 FRATMDLVDKIGYAQAFSFK-YSPRLGTPGSNMLEQVDE 384
            R T+D V     A   +F   +P    PG+ + + V E
Sbjct: 367 IRHTVDFVSNTLKATTATFGILTP---YPGTELFDMVAE 402


>gi|157363409|ref|YP_001470176.1| radical SAM domain-containing protein [Thermotoga lettingae TMO]
 gi|157314013|gb|ABV33112.1| Radical SAM domain protein [Thermotoga lettingae TMO]
          Length = 383

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 80/184 (43%), Gaps = 11/184 (5%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK 238
           + I  GC   C +C V    G +   RS+  +V   +  I+        +  N   +   
Sbjct: 143 IEITRGCPFGCAYCEVSLIGGKKPRHRSVESIVHHCKSGINKSRYIARFITPNAFGYGSD 202

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM-----SDCLIKAHGDLDVLMPYLHL 293
           G+        +LLY+L ++ G+  + Y  S P D+     +D ++K      V   Y+ L
Sbjct: 203 GMKVNVEAIDNLLYNLKKV-GMKEI-YFGSFPSDVRPEFVTDEVLKTIKKY-VNNRYIIL 259

Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
             QSGSDR+L+ + R HT     +  + +  +        D I GFP E +DD   T DL
Sbjct: 260 GAQSGSDRVLRLIKRFHTVEHVVRSAEIV--LNNGFVPRVDIIFGFPFENEDDLAKTFDL 317

Query: 354 VDKI 357
           + K+
Sbjct: 318 IKKL 321


>gi|307354216|ref|YP_003895267.1| Radical SAM domain-containing protein [Methanoplanus petrolearius
           DSM 11571]
 gi|307157449|gb|ADN36829.1| Radical SAM domain protein [Methanoplanus petrolearius DSM 11571]
          Length = 379

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 59/218 (27%), Positives = 92/218 (42%), Gaps = 32/218 (14%)

Query: 182 IQEGCDKFCTFCVVP-YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL 240
           I  GC   C +C  P    G    RS+ ++V  ++   D     +  L  N  A+   G 
Sbjct: 145 ISRGCPFRCGYCQTPRLFGGCMRHRSVDEIVKASKIYTD-----VRFLTPNALAYGSNGR 199

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY-----LHLPV 295
           +        LL S S+ + +    Y  + P ++    I     +D++  Y     +H   
Sbjct: 200 EFLPEKVEKLLSSFSKDQNV----YLGTFPSEVRPEFINDEA-IDLIEKYCANKKIHFGA 254

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSV----RPDIAISSDFIVGFPGETDDDFRAT- 350
           QSGS+R+L  ++R HT        D IR+V        A   D+IVG P ET++D  AT 
Sbjct: 255 QSGSERVLSLLHRGHTC------DDVIRAVELCHERGFAPVVDYIVGIPFETEEDQMATV 308

Query: 351 --MDLVDKIGYAQAFSFKY---SPRLGTPGSNMLEQVD 383
             M  V + G   A  F     +P  GT  S ++ +V+
Sbjct: 309 EQMRWVSRFGKIHAHYFTPLPGTPLAGTEPSELIPEVN 346


>gi|23014689|ref|ZP_00054493.1| COG1032: Fe-S oxidoreductase [Magnetospirillum magnetotacticum
           MS-1]
          Length = 486

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 58/262 (22%), Positives = 109/262 (41%), Gaps = 24/262 (9%)

Query: 136 LPELLERARFGKRVVDTDYSVEDKFERLSIVDGG--------YNRKRGVTAFLTIQ--EG 185
           +P ++ R   G  + +  Y   D  +++  +D G        +N       ++T+    G
Sbjct: 157 VPGIVTRGTDGTLIKNDRYPFIDDLDQIPPLDVGLLPRDYVYFNPIVRNLPYITVSSSHG 216

Query: 186 CDKFCTFCVVPYTRGIEIS-RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK 244
           C   C++C  P+  G      S  +V+D+    ++ G+ E+    +   A R + +D   
Sbjct: 217 CPAKCSYCTAPFFHGTRTRFMSAGKVLDDMAYYLNQGMREVYFRDETFTADRQRVMD--I 274

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304
           CT   ++        +   R  T  P +M   + +A   L      +    +SGS  +L 
Sbjct: 275 CT--GIIERNLRFSWICNARVDTVDP-EMLGLMHRAGCHL------IKFGAESGSQTVLD 325

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
           ++ +  T  + R            IA  + F+VG PGET +   AT+DL  +I  + A  
Sbjct: 326 AVKKGITLQQTRDAFRWCSEA--GIATHAHFMVGMPGETLETMEATLDLAIEIAPSTATF 383

Query: 365 FKYSPRLGTPGSNMLEQVDENV 386
              +P  GTP    + ++DE++
Sbjct: 384 GICTPYPGTPLFRDVARLDESI 405


>gi|300727903|ref|ZP_07061281.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Prevotella bryantii B14]
 gi|299774745|gb|EFI71359.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Prevotella bryantii B14]
          Length = 386

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/101 (37%), Positives = 55/101 (54%), Gaps = 10/101 (9%)

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGET----DDDFRATMDLVDKIG 358
           LK ++RRH A E +  +DR++S   D  IS D + GFPGET    ++D +  + L  K  
Sbjct: 133 LKFLHRRHNANEVKLAVDRLKSAGFD-NISIDLMFGFPGETLTEWEEDIKTAVSLEPK-- 189

Query: 359 YAQAFSFKYSPRLGTPGSNMLEQVD-ENVKAERLLCLQKKL 398
           +  A+S  Y    GTP   MLE+ + E +  E  L + KKL
Sbjct: 190 HISAYSLMYEE--GTPLYRMLEKGEIEEIDEETSLAMYKKL 228


>gi|149924339|ref|ZP_01912707.1| MiaB-like tRNA modifying enzyme YliG [Plesiocystis pacifica SIR-1]
 gi|149814777|gb|EDM74348.1| MiaB-like tRNA modifying enzyme YliG [Plesiocystis pacifica SIR-1]
          Length = 199

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/178 (22%), Positives = 84/178 (47%), Gaps = 12/178 (6%)

Query: 287 LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDD 346
           +  YL +P+Q     +LK M R +T    R +++R+R     + + +  +VG PGE +  
Sbjct: 1   MATYLDVPIQHVDTNVLKKMRRGYTEKVVRDLVERLRKRDAHVWLRTTMLVGHPGEDEAA 60

Query: 347 FRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER---LLCLQKKLREQQV 403
           ++   D + +        F +S   GT  +   ++V   +  ER   ++ LQ  +R ++ 
Sbjct: 61  YQRLYDFIAEGQIDHLGVFPWSKEEGTTSAMHPQRVSPELADERAAAIMELQAGIRARKF 120

Query: 404 SFNDACVGQIIEVLIEKHGKEKGKLV-----GRSPWLQ-SVVLNSKNHNIGDIIKVRI 455
           +   A  G+++E++++    E   L+     G++P +   V+L     + G  ++ RI
Sbjct: 121 A---ALRGEVMELMVDGVSDESEFLLDARHEGQAPEIDGKVILCDGTADAGAFVQARI 175


>gi|70939683|ref|XP_740353.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56518009|emb|CAH76701.1| hypothetical protein PC000675.01.0 [Plasmodium chabaudi chabaudi]
          Length = 500

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 45/78 (57%), Gaps = 2/78 (2%)

Query: 22  IVPQRF--FVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEK 79
           I+P+ +  + KS+GC  N  DS  M  +  + G++ V ++DD D+ ++N+C ++  + E 
Sbjct: 210 IIPENYNIYFKSFGCAHNSSDSEFMMGLLSNYGFQFVKNIDDCDICIVNSCTVKNPSEES 269

Query: 80  VYSFLGRIRNLKNSRIKE 97
           + + +  + NL  SR  E
Sbjct: 270 MKTIINYVNNLNKSRNNE 287


>gi|153813390|ref|ZP_01966058.1| hypothetical protein RUMOBE_03809 [Ruminococcus obeum ATCC 29174]
 gi|149830567|gb|EDM85658.1| hypothetical protein RUMOBE_03809 [Ruminococcus obeum ATCC 29174]
          Length = 128

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/69 (36%), Positives = 42/69 (60%), Gaps = 1/69 (1%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P  + + ++GCQMN   S  +  +    GY R ++ ++AD+++ NTC +RE A  KVY  
Sbjct: 40  PLTYCLTTFGCQMNEKQSEAVAGIMDEIGYHRQDN-EEADVVIYNTCTVRENANLKVYGR 98

Query: 84  LGRIRNLKN 92
           LG + +LK+
Sbjct: 99  LGHLHSLKD 107


>gi|117924423|ref|YP_865040.1| radical SAM protein [Magnetococcus sp. MC-1]
 gi|117608179|gb|ABK43634.1| Radical SAM domain protein [Magnetococcus sp. MC-1]
          Length = 525

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 55/214 (25%), Positives = 87/214 (40%), Gaps = 36/214 (16%)

Query: 185 GCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK 244
           GC   CTFC V  +      RS+  + ++   LI                      D + 
Sbjct: 190 GCPFRCTFCYVSPSAKSWQGRSIESLFEQLDALIAQ-------------------YDSKV 230

Query: 245 CTFSDLLY--SLSEIKGLVRL-RYTTSHPRDMSDCLIKAHGD-----------LDVLMPY 290
             F D L+      I+  +RL R    H +  + C     GD            +V    
Sbjct: 231 VYFRDELFFHDKQRIRDFIRLYRERNYHFKWRASCRASDFGDNFITQEMVQDLAEVGCSC 290

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
           L +  +SGSD ILK++ ++    +  Q    + + +P+I I+  FI+GFP ET  D+RAT
Sbjct: 291 LKMGFESGSDTILKAI-KKGIKVKNIQTAVTMLAKQPEIQINCSFIMGFPQETPADYRAT 349

Query: 351 MDLVDKIGYAQAFSFKYSPRLG--TPGSNMLEQV 382
           M L++ I       +   P+     PG  + E+V
Sbjct: 350 MQLINWIRKQATNFYMVGPQYYRVYPGGALYEEV 383


>gi|301060852|ref|ZP_07201662.1| radical SAM domain protein [delta proteobacterium NaphS2]
 gi|300445040|gb|EFK08995.1| radical SAM domain protein [delta proteobacterium NaphS2]
          Length = 279

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 81/172 (47%), Gaps = 13/172 (7%)

Query: 190 CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSD 249
           C FC     R +   + L ++V+E + +   GV  I     N    +G   D  +    +
Sbjct: 2   CAFCNFTKDRRLMFIKRLDRLVEELKIVSARGVRFIRFTDDNFRHGKGDLNDFSRRIIQE 61

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
            +     +K +  +R +     D    L++A G ++VL     L ++S   ++L +MN+ 
Sbjct: 62  NI----SVKWMTMVRASALERVDFE--LLRASGCIEVL-----LGLESADPQLLANMNKN 110

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
            T   Y ++++++ SV   I +S  FI GFPGET +  + T + + +I + +
Sbjct: 111 ATPALYARVVEQLMSV--GIDVSCYFIFGFPGETAETVKKTRNFIRRIEFPE 160


>gi|167946265|ref|ZP_02533339.1| hypothetical protein Epers_06837 [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 114

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 35/123 (28%), Positives = 65/123 (52%), Gaps = 24/123 (19%)

Query: 213 EARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           EA++L++ GV E+ ++ Q+ +A           W+G+ L        DL  +L E+   V
Sbjct: 3   EAQRLVEAGVRELLVVSQDTSAYGLDTKYRPDFWQGRPL---TTRIHDLAAALGELPAWV 59

Query: 262 RLRYTTSHPR--DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           RL Y   +P   D+   + + H     ++PYL +P+Q  + R+L++M +R  A E  +++
Sbjct: 60  RLHYVYPYPHVDDLIPLMAEGH-----ILPYLDMPLQHANQRVLQAM-KRPAAKE--RVL 111

Query: 320 DRI 322
           +RI
Sbjct: 112 ERI 114


>gi|256392605|ref|YP_003114169.1| radical SAM domain-containing protein [Catenulispora acidiphila DSM
           44928]
 gi|256358831|gb|ACU72328.1| Radical SAM domain protein [Catenulispora acidiphila DSM 44928]
          Length = 541

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 56/201 (27%), Positives = 83/201 (41%), Gaps = 20/201 (9%)

Query: 175 GVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA 234
           G TA L     C   C+FC  P   G   + S+  V  E R L + GV  +  +    N 
Sbjct: 241 GTTAQLRTARSCAFKCSFCDYPSRAGALTTASIDTVRAELRALAELGVRNVVFVDDTFNV 300

Query: 235 WRGKGLDGEKCTFSDLL-YSLSEIKGLVRLRY-TTSHPRDMSDC-LIKAHGDLDVLMPYL 291
                       F D+    + E  GL    Y   S+ RD     L  A G   V     
Sbjct: 301 --------PPKRFKDMCRMMIEEDLGLNWYSYFRCSNARDDEAFDLAAASGCAGVF---- 348

Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351
            L ++SG   +L +M++     EYR  I R++     I   +  IVGFPGET+   R T+
Sbjct: 349 -LGIESGDGDVLAAMHKLAQDSEYRSGIARLKERA--ITTFASIIVGFPGETEKTVRNTI 405

Query: 352 DLVDKIG--YAQAFSFKYSPR 370
           D +++      +A ++  +PR
Sbjct: 406 DFLNETAPDLWRAQAWWANPR 426


>gi|320100458|ref|YP_004176050.1| Radical SAM domain-containing protein [Desulfurococcus mucosus DSM
           2162]
 gi|319752810|gb|ADV64568.1| Radical SAM domain protein [Desulfurococcus mucosus DSM 2162]
          Length = 435

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 61/228 (26%), Positives = 103/228 (45%), Gaps = 17/228 (7%)

Query: 174 RGVTAFLTIQEGCDKFCTFCVVPYTRG-IEISRSLSQVVDEARKLIDNGVCEITLLGQNV 232
           RG+   + +  GC   C++C V Y  G     RS+ ++V   R+L   GV +   +  + 
Sbjct: 170 RGLINPVEVTRGCPYGCSYCQVSYMHGAFYRHRSIGRIVYYVRELARLGVRDYRFITPDS 229

Query: 233 NAWRGKGLDGEK--CTFSDLLYSLSEIKGLVRLR-YTTSHPRDMSDCLIKAHGDLDVLMP 289
            ++    +  E       +LL SL E+   V  R +  S P ++    +     + VL  
Sbjct: 230 LSYGLSTVRREPDVGLIDELLSSLHEVARDVGGRIFYGSFPSEVRPEHVTGEA-VRVLRR 288

Query: 290 YLH-----LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD-IAISSDFIVGFPGET 343
           Y+      +  QSGSDR+L  + R H+  +   +++ +R +  +    S D I+G PGET
Sbjct: 289 YVSNREIIVGAQSGSDRVLSMVRRGHSVDD---VLNAVRVISENGFTPSVDVILGIPGET 345

Query: 344 DDDFRATMDLVDKI-GYAQAFSFKYS-PRLGTP-GSNMLEQVDENVKA 388
            +D   T+ L+++I G        Y  P  GTP G      V  +V+A
Sbjct: 346 REDQEETLRLIERILGMGGRIHVHYYLPLPGTPLGLKTPAPVPADVEA 393


>gi|288926556|ref|ZP_06420474.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Prevotella buccae D17]
 gi|288336698|gb|EFC75066.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Prevotella buccae D17]
          Length = 372

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/101 (36%), Positives = 56/101 (55%), Gaps = 12/101 (11%)

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI-AISSDFIVGFPGETDDDFRATMDL 353
            Q+ SD  L+ ++RRH+A E    ++R+R  R DI  IS D + GFPGET  D++  +D 
Sbjct: 116 AQTFSDARLRFLHRRHSAAEVVTAVERLR--RADIRNISLDLMFGFPGETPADWQTDIDN 173

Query: 354 VDKIG--YAQAFSFKYSPRLGTPGSNML-----EQVDENVK 387
             ++   +  A+S  Y    GTP   ML     E++DE+V 
Sbjct: 174 ALQLHSEHLSAYSLMYEE--GTPLHRMLTRGEVEEIDEDVS 212


>gi|61657427|emb|CAI44342.1| hypothetical protein [Thermotoga sp. RQ7]
          Length = 404

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 52/212 (24%), Positives = 94/212 (44%), Gaps = 19/212 (8%)

Query: 174 RGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDNGVCEITLLGQNV 232
           +G+   + I  GC   C +C  P   G ++  R +  ++  A+  ++        +  N 
Sbjct: 137 KGIYMPIEITRGCPFSCAYCQTPSLAGKQVRHRDVDVIIHYAKLGVEKNRKLARFIAPNS 196

Query: 233 NAWRGK-GLDGEKCTFSDLLYSLSEIKGLVRLRYTT----SHPRDMSDCLIKAHGDLDVL 287
             +  + G+        +LLY L ++ G+  + + T      P  ++D ++K        
Sbjct: 197 FGYGSRNGVTPNVEKIEELLYGLKKV-GVEEIYFGTFPSEVRPESVTDEVLKVVKKYVKN 255

Query: 288 MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI--RSVRPDIAISSDFIVGFPGETDD 345
              + +  QSGSDR+LK + R HT  +  + I++I      P +    DFI GFP ET +
Sbjct: 256 RSIV-IGAQSGSDRVLKIIKRGHTVEQVEEAIEKIAFHGFTPHV----DFIFGFPFETKE 310

Query: 346 D----FRATMDLVDKIGYAQAFSFKYSPRLGT 373
           D    F   M +V++ G A+  +  + P  GT
Sbjct: 311 DIEMTFNFIMRIVERYG-AKIHAHTFMPLPGT 341


>gi|167622996|ref|YP_001673290.1| putative radical SAM protein [Shewanella halifaxensis HAW-EB4]
 gi|167353018|gb|ABZ75631.1| conserved hypothetical radical SAM protein [Shewanella halifaxensis
           HAW-EB4]
          Length = 313

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 45/96 (46%), Gaps = 5/96 (5%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +L L +QS +DR LK +NR H    Y   + R R  R  I + +  I+G PGE  +D+  
Sbjct: 142 WLELGLQSANDRTLKKINRGHDFAAYEDTVKRAR--RLGIKVCTHLILGLPGEGHEDYLE 199

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
           T+D V  +G       K  P     GS M +    N
Sbjct: 200 TLDKVLAVG---VDGLKLHPLHIVEGSTMAKAWRNN 232


>gi|300679361|gb|ADK27478.1| 2-methylthioadenine synthetase [Leptospira interrogans serovar
           Hardjo]
          Length = 127

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 59/121 (48%), Gaps = 6/121 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++F++ + GC  N+ DS+ M      +G+   +  +++D   +NTC   + A E+    +
Sbjct: 3   KKFYITTLGCPKNIADSMSMHHSLLEEGFTPASLPEESDFHFINTCTFIQSATEETIQTI 62

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
                L  +++K+     +VV GC A+   + I    P V++  G   Y +  ++L R +
Sbjct: 63  -----LSAAQVKKQNHQKLVVVGCFAERYPDNIHSEIPEVDLFFGTGKYSQAGKIL-REK 116

Query: 145 F 145
           F
Sbjct: 117 F 117


>gi|302823699|ref|XP_002993499.1| hypothetical protein SELMODRAFT_137168 [Selaginella moellendorffii]
 gi|300138675|gb|EFJ05435.1| hypothetical protein SELMODRAFT_137168 [Selaginella moellendorffii]
          Length = 98

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/52 (42%), Positives = 32/52 (61%)

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           P I I++D I GFPGET +DF   M+L+ +  + Q    ++ PR GTP + M
Sbjct: 6   PKIHIATDIICGFPGETSEDFDRIMELIREYTFPQVHISQFYPRPGTPAALM 57


>gi|74193201|dbj|BAE20608.1| unnamed protein product [Mus musculus]
          Length = 218

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 9/89 (10%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           Q+ +++++GC  N  D   M     + GY+   +  DADL +LN+C ++  A +    F 
Sbjct: 63  QKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAED---HFR 119

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAE 113
             I+  +    K      VV+AGCV QA+
Sbjct: 120 NSIKKAQEENKK------VVLAGCVPQAQ 142


>gi|320160982|ref|YP_004174206.1| hypothetical protein ANT_15780 [Anaerolinea thermophila UNI-1]
 gi|319994835|dbj|BAJ63606.1| hypothetical protein ANT_15780 [Anaerolinea thermophila UNI-1]
          Length = 544

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 61/251 (24%), Positives = 103/251 (41%), Gaps = 45/251 (17%)

Query: 174 RGVTAFLTIQEGCDKFCTFCV--VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQN 231
           +G   F+    GC   CT+C+  V Y   + + RS  ++V+E   L   G+  I +    
Sbjct: 268 KGPFTFIVTSRGCTAGCTYCIKHVSYQYTVRL-RSPEKIVEELWVLKKLGINNIHMYADL 326

Query: 232 VNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSD----CLIKAHGDLDVL 287
               R + +D         L  L   +GL ++++T +   D  D     L+   G     
Sbjct: 327 FTVSRDQVVD---------LCRLIIDQGL-KIKWTCNSRVDYVDEEMLNLMAKAGCW--- 373

Query: 288 MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDF 347
             ++   ++SG+++IL+  + R  AY  R I     + +  I     FI+G PGET++  
Sbjct: 374 --FISWGIESGNEQILR--HARKGAYPERAIHSLTLAKKAGIRNWGYFIIGLPGETEETI 429

Query: 348 RATMDLVDKIGYAQAFSFKYSPRLGTP------------GSNMLEQVD---------ENV 386
           R T+D    +    A     +P  GTP                 EQVD          ++
Sbjct: 430 RQTIDFAKSLPLDLALFHIAAPYPGTPFFFEVVREGWFRKGTRWEQVDMDKETVLDYPHL 489

Query: 387 KAERLLCLQKK 397
            AERL+  Q++
Sbjct: 490 PAERLMYWQRR 500


>gi|222099479|ref|YP_002534047.1| hypothetical protein CTN_0505 [Thermotoga neapolitana DSM 4359]
 gi|221571869|gb|ACM22681.1| Putative uncharacterized protein [Thermotoga neapolitana DSM 4359]
          Length = 376

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 52/212 (24%), Positives = 94/212 (44%), Gaps = 19/212 (8%)

Query: 174 RGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDNGVCEITLLGQNV 232
           +G+   + I  GC   C +C  P   G ++  R +  ++  A+  ++        +  N 
Sbjct: 109 KGIYMPIEITRGCPFSCAYCQTPSLAGKQVRHRDVDVIIHYAKLGVEKNRKLARFIAPNS 168

Query: 233 NAWRGK-GLDGEKCTFSDLLYSLSEIKGLVRLRYTT----SHPRDMSDCLIKAHGDLDVL 287
             +  + G+        +LLY L ++ G+  + + T      P  ++D ++K        
Sbjct: 169 FGYGSRNGVTPNVEKIEELLYGLKKV-GVEEIYFGTFPSEVRPESVTDEVLKVVKKYVKN 227

Query: 288 MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI--RSVRPDIAISSDFIVGFPGETDD 345
              + +  QSGSDR+LK + R HT  +  + I++I      P +    DFI GFP ET +
Sbjct: 228 RSIV-IGAQSGSDRVLKIIKRGHTVEQVEEAIEKIAFHGFTPHV----DFIFGFPFETKE 282

Query: 346 D----FRATMDLVDKIGYAQAFSFKYSPRLGT 373
           D    F   M +V++ G A+  +  + P  GT
Sbjct: 283 DIEMTFNFIMRIVERYG-AKIHAHTFMPLPGT 313


>gi|330816070|ref|YP_004359775.1| Radical SAM domain protein [Burkholderia gladioli BSR3]
 gi|327368463|gb|AEA59819.1| Radical SAM domain protein [Burkholderia gladioli BSR3]
          Length = 480

 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 58/215 (26%), Positives = 90/215 (41%), Gaps = 43/215 (20%)

Query: 185 GCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK 244
           GC   CTFC+ P T G    R  S         ++N + E+  +  N+   +    D + 
Sbjct: 212 GCRSKCTFCLWPQTVGGHRYRVRS---------VENVLAEVKWIRDNMPEVKEIMFDDD- 261

Query: 245 CTFSDLLYSLSEI-KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPV-------- 295
            TF+D    + EI +GL +L  T S       C  KA+      +PY  L +        
Sbjct: 262 -TFTDFKPRVEEIARGLGKLGVTWS-------CNAKAN------VPYATLKIMKENGLRL 307

Query: 296 -----QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
                +SG D+IL ++ +       R+  +  R +   I I   FI+G PGET D  R T
Sbjct: 308 LLVGYESGDDQILLNIKKGLRTDIARRFNEDCRKL--GIKIHGTFILGLPGETRDTIRKT 365

Query: 351 MDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
           ++   +I      + + S     PG+ + EQ  EN
Sbjct: 366 IEYAKEI---NPHTIQVSLAAPYPGTRLYEQAIEN 397


>gi|318087552|gb|ADV40366.1| CDK5 regulatory subunit associated protein 1, isoform CRA_a
           [Latrodectus hesperus]
          Length = 174

 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 39/58 (67%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           ++ ++++YGCQMNV D+  +  +    GYE    ++D D+I++ TC IRE A +K+++
Sbjct: 87  KKVYIETYGCQMNVNDTEIIYAILSKDGYEISKEINDTDVILIMTCAIREGAEQKIWN 144


>gi|169839951|ref|ZP_02873139.1| tRNA thiotransferase [candidate division TM7 single-cell isolate
           TM7a]
          Length = 34

 Score = 51.2 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/34 (55%), Positives = 29/34 (85%)

Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
            +++D IVGFPGETD+DF+ TMD+V+++G+  AF
Sbjct: 1   GLTTDIIVGFPGETDEDFQDTMDVVNEVGFENAF 34


>gi|330820832|ref|YP_004349694.1| Radical SAM domain protein [Burkholderia gladioli BSR3]
 gi|327372827|gb|AEA64182.1| Radical SAM domain protein [Burkholderia gladioli BSR3]
          Length = 473

 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 58/215 (26%), Positives = 90/215 (41%), Gaps = 43/215 (20%)

Query: 185 GCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK 244
           GC   CTFC+ P T G    R  S         ++N + E+  +  N+   +    D + 
Sbjct: 205 GCRSKCTFCLWPQTVGGHRYRVRS---------VENVLAEVKWIRDNMPEVKEIMFDDD- 254

Query: 245 CTFSDLLYSLSEI-KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPV-------- 295
            TF+D    + EI +GL +L  T S       C  KA+      +PY  L +        
Sbjct: 255 -TFTDFKPRVEEIARGLGKLGVTWS-------CNAKAN------VPYATLKIMKENGLRL 300

Query: 296 -----QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
                +SG D+IL ++ +       R+  +  R +   I I   FI+G PGET D  R T
Sbjct: 301 LLVGYESGDDQILLNIKKGLRTDIARRFNEDCRKL--GIKIHGTFILGLPGETRDTIRKT 358

Query: 351 MDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
           ++   +I      + + S     PG+ + EQ  EN
Sbjct: 359 IEYAKEI---NPHTIQVSLAAPYPGTRLYEQAIEN 390


>gi|323446645|gb|EGB02733.1| hypothetical protein AURANDRAFT_9774 [Aureococcus anophagefferens]
          Length = 94

 Score = 51.2 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 30/89 (33%), Positives = 48/89 (53%), Gaps = 3/89 (3%)

Query: 314 EYRQIIDRIRS-VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
           ++R ++D + + V   +++ +D I GFPGETDDDF AT  LV+   +      ++  R G
Sbjct: 3   DFRAVVDGLAARVDGGLSLMTDVICGFPGETDDDFDATYALVEDYAFGLINISQFYARPG 62

Query: 373 TPGSNMLEQVDENVK--AERLLCLQKKLR 399
           TP ++M       VK  + RL  L +  R
Sbjct: 63  TPAASMKRVHTATVKDRSRRLSALTQTFR 91


>gi|294139687|ref|YP_003555665.1| hypothetical protein SVI_0916 [Shewanella violacea DSS12]
 gi|293326156|dbj|BAJ00887.1| conserved hypothetical protein [Shewanella violacea DSS12]
          Length = 316

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 40/69 (57%), Gaps = 2/69 (2%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +L L +QS +D+ LK +NR HT  +YR  + R R+    I + +  I+G PGE   D+ +
Sbjct: 142 WLELGLQSANDKTLKRINRGHTFNDYRDTVLRARA--KGIKVCTHLILGLPGENHQDYLS 199

Query: 350 TMDLVDKIG 358
           ++D +   G
Sbjct: 200 SLDAILNTG 208


>gi|61657454|emb|CAI44366.1| hypothetical protein [Thermotoga sp. SG1]
          Length = 404

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 48/192 (25%), Positives = 84/192 (43%), Gaps = 14/192 (7%)

Query: 174 RGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDNGVCEITLLGQNV 232
           +G+   + I  GC   C +C  P   G  +  R +  ++  AR  ++        +  N 
Sbjct: 137 KGIYMPIEITRGCPFSCAYCQTPSLAGKRVRHRDVDVILHYARLGVERNRKLARFIAPNS 196

Query: 233 NAWRGK-GLDGEKCTFSDLLYSLSEIKGLVRLRYTT----SHPRDMSDCLIKAHGDLDVL 287
             +  + G+        +LLY L ++ G+  + + T      P  ++D ++K        
Sbjct: 197 FGYGSRNGVTPNVEKIEELLYGLKKV-GVEEIYFGTFPSEVRPESVTDEVLKVVKKYVKN 255

Query: 288 MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI--RSVRPDIAISSDFIVGFPGETDD 345
              + +  QSGSDRILK + R HT  +  + I++I      P +    DFI GFP ET +
Sbjct: 256 RSIV-IGSQSGSDRILKIIKRGHTVEQVEEAIEKIAFHGFTPHV----DFIFGFPFETKE 310

Query: 346 DFRATMDLVDKI 357
           D   T + + +I
Sbjct: 311 DIEMTFNFITRI 322


>gi|170694241|ref|ZP_02885396.1| hopanoid biosynthesis associated radical SAM protein HpnJ
           [Burkholderia graminis C4D1M]
 gi|170140981|gb|EDT09154.1| hopanoid biosynthesis associated radical SAM protein HpnJ
           [Burkholderia graminis C4D1M]
          Length = 473

 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 56/209 (26%), Positives = 89/209 (42%), Gaps = 31/209 (14%)

Query: 185 GCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK 244
           GC   CTFC+ P T G    R+ S         ++N + E+  +  N+   +    D + 
Sbjct: 205 GCRSKCTFCLWPQTVGGHRYRTRS---------VENVLAEVKWIRDNMPEVKEIMFDDD- 254

Query: 245 CTFSDLLYSLSEI-KGLVRLRYTTSHPRDMSDCLIKAHGDLDVL-------MPYLHLPVQ 296
            TF+D    + EI +GL +L  T S       C  KA+     L       +  L +  +
Sbjct: 255 -TFTDFKPRVEEIARGLGKLGVTWS-------CNAKANVPYSTLKIMKENGLRLLLVGYE 306

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
           SG D+IL ++ +       R+  D  R +   I I   FI+G PGET    + T+D   +
Sbjct: 307 SGDDQILLNIRKGLRTDIARRFSDDCRKL--GIKIHGTFILGLPGETQQTIQKTIDYAKE 364

Query: 357 IGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
           I      + + S     PG+ + +Q  EN
Sbjct: 365 I---NPHTIQVSLAAPYPGTRLYDQAVEN 390


>gi|238023830|ref|YP_002908062.1| Radical SAM domain-containing protein [Burkholderia glumae BGR1]
 gi|237878495|gb|ACR30827.1| Radical SAM domain protein [Burkholderia glumae BGR1]
          Length = 473

 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 57/209 (27%), Positives = 88/209 (42%), Gaps = 31/209 (14%)

Query: 185 GCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK 244
           GC   CTFC+ P T G    R  S         ++N + E+  +  N+   +    D + 
Sbjct: 205 GCRSKCTFCLWPQTVGGHRYRVRS---------VENVLAEVKWIRDNMPEVKEIMFDDD- 254

Query: 245 CTFSDLLYSLSEI-KGLVRLRYTTSHPRDMSDCLIKAHGDLDVL-------MPYLHLPVQ 296
            TF+D    + EI +GL RL  + S       C  KA+     L       +  L +  +
Sbjct: 255 -TFTDFKPRVEEIARGLGRLGVSWS-------CNAKANVPYSTLKIMKDNGLRLLLVGYE 306

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
           SG D+IL ++ +       R+  +  R +   I I   FI+G PGET D  R T+    +
Sbjct: 307 SGDDQILLNIKKGLRTDIARRFSEDCRKL--GIKIHGTFILGLPGETKDTIRKTIAYAKE 364

Query: 357 IGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
           I      + + S     PG+ + EQ  EN
Sbjct: 365 I---NPHTIQVSLAAPYPGTKLYEQAVEN 390


>gi|302348262|ref|YP_003815900.1| hypothetical protein ASAC_0462 [Acidilobus saccharovorans 345-15]
 gi|302328674|gb|ADL18869.1| hypothetical protein ASAC_0462 [Acidilobus saccharovorans 345-15]
          Length = 521

 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 61/239 (25%), Positives = 107/239 (44%), Gaps = 31/239 (12%)

Query: 148 RVVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDKF----CTFCVVPYTRGI 201
           R +  DYS  ++F  L  SIV    N  + + A +    GC ++    C+FCV P  RG 
Sbjct: 160 RAIREDYSKVNRFAVLGASIVRFHPNFGKNLIAEIETYRGCARWVSGGCSFCVEP-LRGR 218

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQ-NVNAWRGKGLDGEKCT------FSDLLYSL 254
            I+R    +V E R L + GV    L  Q ++  +    L  E+           L + +
Sbjct: 219 PIARDPMAIVKEIRALYEVGVRNFRLGRQADILVYNSSQLGSEEWPRPSPQELERLFHGI 278

Query: 255 -SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP-------VQSGSDRILKSM 306
            +E   L  L     +P  ++    ++   L V++ Y H P       V+S   +++K  
Sbjct: 279 HTEAPNLEVLHIDNVNPGTIARYPEESTEALKVIVKY-HTPGDVAALGVESVDPQVVKIN 337

Query: 307 NRRHTAYEYR---QIIDRIRSVR-----PDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
           N + TA E     +II+++ + R     P++    +FI+G PGE  + +R   + +++I
Sbjct: 338 NLKVTADEALKAIEIINKVGASRGYNGLPELLPGINFILGLPGERRESYRLNREFLEEI 396


>gi|238026649|ref|YP_002910880.1| Radical SAM domain-containing protein [Burkholderia glumae BGR1]
 gi|237875843|gb|ACR28176.1| Radical SAM domain protein [Burkholderia glumae BGR1]
          Length = 480

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 57/209 (27%), Positives = 88/209 (42%), Gaps = 31/209 (14%)

Query: 185 GCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK 244
           GC   CTFC+ P T G    R  S         ++N + E+  +  N+   +    D + 
Sbjct: 212 GCRSKCTFCLWPQTVGGHRYRVRS---------VENVLAEVKWIRDNMPEVKEIMFDDD- 261

Query: 245 CTFSDLLYSLSEI-KGLVRLRYTTSHPRDMSDCLIKAHGDLDVL-------MPYLHLPVQ 296
            TF+D    + EI +GL RL  + S       C  KA+     L       +  L +  +
Sbjct: 262 -TFTDFKPRVEEIARGLGRLGVSWS-------CNAKANVPYSTLKIMKDNGLRLLLVGYE 313

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
           SG D+IL ++ +       R+  +  R +   I I   FI+G PGET D  R T+    +
Sbjct: 314 SGDDQILLNIKKGLRTDIARRFSEDCRKL--GIKIHGTFILGLPGETKDTIRKTIAYAKE 371

Query: 357 IGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
           I      + + S     PG+ + EQ  EN
Sbjct: 372 I---NPHTIQVSLAAPYPGTKLYEQAVEN 397


>gi|187924183|ref|YP_001895825.1| hopanoid biosynthesis associated radical SAM protein HpnJ
           [Burkholderia phytofirmans PsJN]
 gi|187715377|gb|ACD16601.1| hopanoid biosynthesis associated radical SAM protein HpnJ
           [Burkholderia phytofirmans PsJN]
          Length = 473

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 56/215 (26%), Positives = 91/215 (42%), Gaps = 43/215 (20%)

Query: 185 GCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK 244
           GC   CTFC+ P T G    R+ S         ++N + E+  +  N+   +    D + 
Sbjct: 205 GCRSKCTFCLWPQTVGGHRYRTRS---------VENVLAEVKWIRDNMPEVKEIMFDDD- 254

Query: 245 CTFSDLLYSLSEI-KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPV-------- 295
            TF+D    + EI +GL +L  T S       C  KA+      +PY  L +        
Sbjct: 255 -TFTDFKPRVEEIARGLGKLGVTWS-------CNAKAN------VPYATLKIMKENGLRL 300

Query: 296 -----QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
                +SG D+IL ++ +       R+  +  R++   I I   FI+G PGET D  + T
Sbjct: 301 LLVGYESGDDQILLNIKKGLRTDIARRFSNDCRTL--GIKIHGTFILGLPGETQDTIQKT 358

Query: 351 MDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
           ++   +I      + + S     PG+ +  Q  EN
Sbjct: 359 IEYAKEI---NPHTIQVSLAAPYPGTTLYNQAVEN 390


>gi|296163823|ref|ZP_06846506.1| hopanoid biosynthesis associated radical SAM protein HpnJ
           [Burkholderia sp. Ch1-1]
 gi|295885932|gb|EFG65867.1| hopanoid biosynthesis associated radical SAM protein HpnJ
           [Burkholderia sp. Ch1-1]
          Length = 432

 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 56/209 (26%), Positives = 89/209 (42%), Gaps = 31/209 (14%)

Query: 185 GCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK 244
           GC   CTFC+ P T G    R+ S         ++N + E+  +  N+   R    D + 
Sbjct: 201 GCRSKCTFCLWPQTVGGHRYRTRS---------VENVLAEVKWIRDNMPEVREIMFDDD- 250

Query: 245 CTFSDLLYSLSEI-KGLVRLRYTTSHPRDMSDCLIKAHGDLDVL-------MPYLHLPVQ 296
            TF+D    + EI +GL +L  T S       C  KA+     L       +  L +  +
Sbjct: 251 -TFTDFKPRVEEIARGLGQLGVTWS-------CNAKANVPYSTLKIMKENGLRLLLVGYE 302

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
           SG D+IL ++ +       R+  D  R +   I I   FI+G PGET D  + T++   +
Sbjct: 303 SGDDQILLNIKKGLRTDIARRFSDDCRKL--GIKIHGTFILGLPGETQDTIQKTIEYAKE 360

Query: 357 IGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
           I      + + S     PG+ +  Q  +N
Sbjct: 361 I---NPHTIQVSLAAPYPGTTLYNQAVDN 386


>gi|297618573|ref|YP_003706678.1| Radical SAM domain-containing protein [Methanococcus voltae A3]
 gi|297618633|ref|YP_003706738.1| Radical SAM domain-containing protein [Methanococcus voltae A3]
 gi|297377550|gb|ADI35705.1| Radical SAM domain protein [Methanococcus voltae A3]
 gi|297377610|gb|ADI35765.1| Radical SAM domain protein [Methanococcus voltae A3]
          Length = 490

 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 50/190 (26%), Positives = 84/190 (44%), Gaps = 19/190 (10%)

Query: 174 RGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDNGVCEITLLGQNV 232
           RG   ++    GC   CTFC VP   G +I S+ L  ++ E + L  +GV  I + G   
Sbjct: 203 RGANVYIETHRGCLGNCTFCQVPEFFGRDIRSKPLELILKEVKNLKKHGVKRIAISGGTG 262

Query: 233 NAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM------SDCLIKAHGDLDV 286
           + +  K     +  F +++  +S + G   L    S P DM      SD L     +   
Sbjct: 263 SLYNFKK-SSNRNLFIEMIEKVSSMVGSKNL----SVP-DMRVDYVDSDILTAVRNN--- 313

Query: 287 LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDD 346
            + ++   ++SGS+++L  M +     +    I   +     + +   FIVG+P E + D
Sbjct: 314 TVGWVFYGIESGSNKLLSDMKKGTNPEKNLNAIKLAKDC--GVKVGGSFIVGYPTEREVD 371

Query: 347 FRATMD-LVD 355
           +  T D LVD
Sbjct: 372 YLMTKDFLVD 381


>gi|91779703|ref|YP_554911.1| hypothetical protein Bxe_B0385 [Burkholderia xenovorans LB400]
 gi|91692363|gb|ABE35561.1| conserved hypothetical protein [Burkholderia xenovorans LB400]
          Length = 473

 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 56/209 (26%), Positives = 89/209 (42%), Gaps = 31/209 (14%)

Query: 185 GCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK 244
           GC   CTFC+ P T G    R+ S         ++N + E+  +  N+   R    D + 
Sbjct: 205 GCRSKCTFCLWPQTVGGHRYRTRS---------VENVLAEVKWIRDNMPEVREIMFDDD- 254

Query: 245 CTFSDLLYSLSEI-KGLVRLRYTTSHPRDMSDCLIKAHGDLDVL-------MPYLHLPVQ 296
            TF+D    + EI +GL +L  T S       C  KA+     L       +  L +  +
Sbjct: 255 -TFTDFKPRVEEIARGLGQLGVTWS-------CNAKANVPYPTLKIMKENGLRLLLVGYE 306

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
           SG D+IL ++ +       R+  D  R +   I I   FI+G PGET D  + T++   +
Sbjct: 307 SGDDQILLNIKKGLRTDIARRFSDDCRKL--GIKIHGTFILGLPGETQDTIQKTIEYAKE 364

Query: 357 IGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
           I      + + S     PG+ +  Q  +N
Sbjct: 365 I---NPHTIQVSLAAPYPGTTLYNQAVDN 390


>gi|91783752|ref|YP_558958.1| putative methyltransferase, or Fe-S oxidoreductase [Burkholderia
           xenovorans LB400]
 gi|91687706|gb|ABE30906.1| Putative methyltransferase, or Fe-S oxidoreductase [Burkholderia
           xenovorans LB400]
          Length = 473

 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 56/209 (26%), Positives = 89/209 (42%), Gaps = 31/209 (14%)

Query: 185 GCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK 244
           GC   CTFC+ P T G    R+ S         ++N + E+  +  N+   R    D + 
Sbjct: 205 GCRSKCTFCLWPQTVGGHRYRTRS---------VENVLAEVKWIRDNMPEVREIMFDDD- 254

Query: 245 CTFSDLLYSLSEI-KGLVRLRYTTSHPRDMSDCLIKAHGDLDVL-------MPYLHLPVQ 296
            TF+D    + EI +GL +L  T S       C  KA+     L       +  L +  +
Sbjct: 255 -TFTDFKPRVEEIARGLGQLGVTWS-------CNAKANVPYPTLKIMKENGLRLLLVGYE 306

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
           SG D+IL ++ +       R+  D  R +   I I   FI+G PGET D  + T++   +
Sbjct: 307 SGDDQILLNIKKGLRTDIARRFSDDCRKL--GIKIHGTFILGLPGETQDTIQKTIEYAKE 364

Query: 357 IGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
           I      + + S     PG+ +  Q  +N
Sbjct: 365 I---NPHTIQVSLAAPYPGTTLYNQAVDN 390


>gi|315927399|gb|EFV06737.1| uncharacterized protein family UPF0004 family protein
           [Campylobacter jejuni subsp. jejuni DFVF1099]
          Length = 139

 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 59/115 (51%), Gaps = 8/115 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + ++ S GC  N+ DS  M  +     YE  +    AD++++NTC   + A ++    + 
Sbjct: 3   KLYLMSLGCNKNLVDSEIM--LGHLSAYELCDEPSKADVLIVNTCGFIDSAKKES---IN 57

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140
            I +L   R K   D L+VV GC+ Q   EE+++  P V++  G   Y R+ E++
Sbjct: 58  AILDLHEQRKK---DSLLVVTGCLMQRYREELMKELPEVDLFTGVGDYERIDEMI 109


>gi|307729782|ref|YP_003907006.1| hopanoid biosynthesis associated radical SAM protein HpnJ
           [Burkholderia sp. CCGE1003]
 gi|307584317|gb|ADN57715.1| hopanoid biosynthesis associated radical SAM protein HpnJ
           [Burkholderia sp. CCGE1003]
          Length = 473

 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 58/211 (27%), Positives = 95/211 (45%), Gaps = 35/211 (16%)

Query: 185 GCDKFCTFCVVPYTRGIEI--SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG 242
           GC   CTFC+ P T G     +RS+  V++E + + DN + E+            K +  
Sbjct: 205 GCRSRCTFCLWPQTVGGHRYRTRSVENVLEEVKWIRDN-MPEV------------KEIMF 251

Query: 243 EKCTFSDLLYSLSEI-KGLVRLRYTTSHPRDMSDCLIKA---HGDLDVL----MPYLHLP 294
           +  TF+D    + EI +GL RL  T S       C  KA   +G L ++    +  L + 
Sbjct: 252 DDDTFTDFKPRVEEIARGLGRLGVTWS-------CNAKANVPYGTLKIMKENGLRLLLVG 304

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
            +SG D+IL ++ +       R+  +  R +   I I   FI+G PGET    + T++  
Sbjct: 305 YESGDDQILLNIKKGLRTDIARRFSEDCRKL--GIKIHGTFILGLPGETQQTIQKTIEYA 362

Query: 355 DKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            +I      + + S     PG+ + +Q  EN
Sbjct: 363 KEI---NPHTIQVSLAAPYPGTRLYDQAVEN 390


>gi|145591651|ref|YP_001153653.1| radical SAM domain-containing protein [Pyrobaculum arsenaticum DSM
           13514]
 gi|145283419|gb|ABP51001.1| Radical SAM domain protein [Pyrobaculum arsenaticum DSM 13514]
          Length = 410

 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 51/214 (23%), Positives = 86/214 (40%), Gaps = 17/214 (7%)

Query: 170 YNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLG 229
           Y+   G+   + I   C   C FC   +  G    R L  + +  +  +  G+ EI  + 
Sbjct: 146 YSESLGIYPPIEITRSCAYRCAFCQT-WGHGPVRHRPLHNIAEIVKVYVKRGISEIRFVA 204

Query: 230 QNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMP 289
             V    G   DG+      L   L  ++ L    Y  S P +     +     L  + P
Sbjct: 205 P-VGFLYGS-TDGKTPNIDALTSLLRTVRELGGAPYLGSFPSETRPETVTPD-VLKAVRP 261

Query: 290 Y-----LHLPVQSGSDRILKSMNRRHTAYEYRQIID--RIRSVRPDIAISSDFIVGFPGE 342
           Y     + + +Q+ S+++LK++ R H      + +   R+   +P +    D I G PGE
Sbjct: 262 YVANRRISIGLQTASEKLLKAVKRGHDVAVVEEAVKNARVFGFKPVV----DVIAGLPGE 317

Query: 343 TDDDFRATMDLVDKIGYAQAF--SFKYSPRLGTP 374
             DD  AT+  ++K+    A+     Y P  GTP
Sbjct: 318 DGDDVEATVREMEKLVKMGAYIRMHYYIPLPGTP 351


>gi|310824425|ref|YP_003956783.1| hypothetical protein STAUR_7200 [Stigmatella aurantiaca DW4/3-1]
 gi|309397497|gb|ADO74956.1| conserved uncharacterized protein [Stigmatella aurantiaca DW4/3-1]
          Length = 431

 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 66/248 (26%), Positives = 104/248 (41%), Gaps = 30/248 (12%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK 238
           + I  GC   C FC  P+        RS+  V + AR L  +G  +I  +     ++ G 
Sbjct: 180 IEITRGCIYACRFCQTPFLNKARFRHRSVRNVAEWARVLRASGRRDIRFITPTSLSY-GS 238

Query: 239 GLDGEKC-TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY-----LH 292
           G +         LL +L E        +  + P ++    +     L +L  Y     L 
Sbjct: 239 GDEAVNLEAVEALLAALREAMAPEGRIFFGTFPSEVRPEHVTPEA-LALLKRYVANDNLI 297

Query: 293 LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS------DFIVGFPGETDDD 346
           +  QSGS+RIL+S +R H           +RSVR  +A+        DFI+G PGE  +D
Sbjct: 298 IGGQSGSERILRSSHRGHDTEAV------VRSVR--VALEGGFLPNVDFILGLPGEGPED 349

Query: 347 FRATMDLVDKIG--YAQAFSFKYSPRLGTPGSNMLEQVDENVKAERL--LCLQKKL---R 399
             AT+ +++ +    A+     + P  GTP  +      +   A RL  L  Q +L    
Sbjct: 350 IEATVRMMETLAGLGARVHGHTFMPLPGTPFRDAAPGRVDGETARRLDELASQGRLYGHW 409

Query: 400 EQQVSFND 407
           +QQVS  +
Sbjct: 410 KQQVSLAE 417


>gi|115374421|ref|ZP_01461704.1| Fe-S oxidoreductase family protein [Stigmatella aurantiaca DW4/3-1]
 gi|115368623|gb|EAU67575.1| Fe-S oxidoreductase family protein [Stigmatella aurantiaca DW4/3-1]
          Length = 404

 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 66/248 (26%), Positives = 104/248 (41%), Gaps = 30/248 (12%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK 238
           + I  GC   C FC  P+        RS+  V + AR L  +G  +I  +     ++ G 
Sbjct: 153 IEITRGCIYACRFCQTPFLNKARFRHRSVRNVAEWARVLRASGRRDIRFITPTSLSY-GS 211

Query: 239 GLDGEKC-TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY-----LH 292
           G +         LL +L E        +  + P ++    +     L +L  Y     L 
Sbjct: 212 GDEAVNLEAVEALLAALREAMAPEGRIFFGTFPSEVRPEHVTPEA-LALLKRYVANDNLI 270

Query: 293 LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS------DFIVGFPGETDDD 346
           +  QSGS+RIL+S +R H           +RSVR  +A+        DFI+G PGE  +D
Sbjct: 271 IGGQSGSERILRSSHRGHDTEAV------VRSVR--VALEGGFLPNVDFILGLPGEGPED 322

Query: 347 FRATMDLVDKIG--YAQAFSFKYSPRLGTPGSNMLEQVDENVKAERL--LCLQKKL---R 399
             AT+ +++ +    A+     + P  GTP  +      +   A RL  L  Q +L    
Sbjct: 323 IEATVRMMETLAGLGARVHGHTFMPLPGTPFRDAAPGRVDGETARRLDELASQGRLYGHW 382

Query: 400 EQQVSFND 407
           +QQVS  +
Sbjct: 383 KQQVSLAE 390


>gi|289804696|ref|ZP_06535325.1| hypothetical protein Salmonellaentericaenterica_09527 [Salmonella
           enterica subsp. enterica serovar Typhi str. AG3]
          Length = 88

 Score = 50.1 bits (118), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 8/88 (9%)

Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE-- 243
           FC++P  RG  +SR +  V+ EA++L+D GV EI ++ Q+ +A+      R    +GE  
Sbjct: 1   FCIIPSMRGDLVSRPIGDVLSEAKRLVDAGVKEILVISQDTSAYGVDVKHRTGFHNGEPM 60

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPR 271
           K +   L   LS++    RL Y   +P 
Sbjct: 61  KTSMVSLCEQLSKLGVWTRLHYVYPYPH 88


>gi|218779021|ref|YP_002430339.1| radical SAM domain protein [Desulfatibacillum alkenivorans AK-01]
 gi|218760405|gb|ACL02871.1| Radical SAM domain protein [Desulfatibacillum alkenivorans AK-01]
          Length = 471

 Score = 50.1 bits (118), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 53/213 (24%), Positives = 88/213 (41%), Gaps = 22/213 (10%)

Query: 168 GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN--GVCEI 225
           G + R+  V   LT   GC   C FC VP   G +I     Q+V E    +    GV E 
Sbjct: 196 GAFFRRFPVAPALT-SRGCSYGCGFCSVPALTGGKIRFRAPQLVAEELMALKTRFGVQEA 254

Query: 226 TLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDC---LIKAHG 282
            ++  N  A +   L+  +            I   V L +T  +   M +    LI+A  
Sbjct: 255 QIIDDNFTANKAHALNTCRAL----------INSGVNLPWTCPNGVRMENLDKELIQAMK 304

Query: 283 DLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV-RPDIAISSDFIVGFPG 341
                   + L ++SGS ++L   NR         + +R+  + +  + ++  FI+G+P 
Sbjct: 305 GAGCY--SVSLGLESGSAKVL---NRMKKGLSLDHVGERVELLAKAGLEVNGFFILGYPE 359

Query: 342 ETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
           ET  D +AT+D    +   +A    ++P  G P
Sbjct: 360 ETRQDMKATLDFAKSLPLTRANFSLFTPLPGCP 392


>gi|167570648|ref|ZP_02363522.1| radical SAM domain protein [Burkholderia oklahomensis C6786]
          Length = 481

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 58/211 (27%), Positives = 92/211 (43%), Gaps = 35/211 (16%)

Query: 185 GCDKFCTFCVVPYTRGIEI--SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG 242
           GC   CTFC+ P T G     +RS+  V+ E + + DN + E+            K +  
Sbjct: 213 GCRSKCTFCLWPQTVGGHRYRTRSVESVLAEVKWIRDN-MPEV------------KEIMF 259

Query: 243 EKCTFSDLLYSLSEI-KGLVRLRYTTSHPRDMSDCLIKAHGDLDVL-------MPYLHLP 294
           +  TF+D    + EI +GL +L  T S       C  KA+     L       +  L + 
Sbjct: 260 DDDTFTDFKPRVEEIARGLGKLGVTWS-------CNAKANVPYSTLKIMKENGLRLLLVG 312

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
            +SG D+IL ++ +       R+  +  R +   I I   FI+G PGET D  + T++  
Sbjct: 313 YESGDDQILLNIKKGLRTDIARRFNEDCRKL--GIKIHGTFILGLPGETKDTIKKTIEYA 370

Query: 355 DKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            +I      + + S     PG+ + EQ  EN
Sbjct: 371 KEI---NPHTIQVSLAAPYPGTRLYEQAIEN 398


>gi|39936612|ref|NP_948888.1| coenzyme B12-binding elongator protein 3/MiaB/NifB
           [Rhodopseudomonas palustris CGA009]
 gi|39650468|emb|CAE28991.1| Coenzyme B12-binding:Elongator protein 3/MiaB/NifB
           [Rhodopseudomonas palustris CGA009]
          Length = 589

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 62/237 (26%), Positives = 106/237 (44%), Gaps = 32/237 (13%)

Query: 168 GGYNRKRGV-TAFLTI--QEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLI-DNGV 222
           G ++R  G    F T+    GC   CTFC V    G  +  R++  V+DE + L+ D+G+
Sbjct: 201 GAFSRYVGADKPFATVLAARGCRARCTFCTVRNFNGFGLRQRTVQDVIDEVKHLVTDHGI 260

Query: 223 CEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE-IKGLVRLRYTTSHPRDMSDCLIKAH 281
             I  L  ++   R + L         L   L+E + GL    +T S      + LI   
Sbjct: 261 RSIDWLDDDLLWDRERALA--------LFRGLAEQVPGL---EWTAS------NGLIAVA 303

Query: 282 GDLDVL-------MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSD 334
            D +V+       +    + V+SG+D +LK++ +  T  + R   + + +  P + +S++
Sbjct: 304 IDDEVMQAMVASGLRAFKIGVESGNDAMLKTIKKPTTKPKLRARAE-LFARYPQVFVSTN 362

Query: 335 FIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV-DENVKAER 390
           FI+GFP ET      + DL  ++    A  +   P  GT   +  + + D   K ER
Sbjct: 363 FIIGFPDETFGQMMDSYDLAVELASDWASFYICQPLKGTEMFSAFQSLGDARTKEER 419


>gi|167563483|ref|ZP_02356399.1| radical SAM domain protein [Burkholderia oklahomensis EO147]
          Length = 481

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 58/211 (27%), Positives = 92/211 (43%), Gaps = 35/211 (16%)

Query: 185 GCDKFCTFCVVPYTRGIEI--SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG 242
           GC   CTFC+ P T G     +RS+  V+ E + + DN + E+            K +  
Sbjct: 213 GCRSKCTFCLWPQTVGGHRYRTRSVESVLAEVKWIRDN-MPEV------------KEIMF 259

Query: 243 EKCTFSDLLYSLSEI-KGLVRLRYTTSHPRDMSDCLIKAHGDLDVL-------MPYLHLP 294
           +  TF+D    + EI +GL +L  T S       C  KA+     L       +  L + 
Sbjct: 260 DDDTFTDFKPRVEEIARGLGKLGVTWS-------CNAKANVPYSTLKIMKENGLRLLLVG 312

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
            +SG D+IL ++ +       R+  +  R +   I I   FI+G PGET D  + T++  
Sbjct: 313 YESGDDQILLNIKKGLRTDIARRFNEDCRKL--GIKIHGTFILGLPGETKDTIKKTIEYA 370

Query: 355 DKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            +I      + + S     PG+ + EQ  EN
Sbjct: 371 KEI---NPHTIQVSLAAPYPGTRLYEQAIEN 398


>gi|297619908|ref|YP_003708013.1| Radical SAM domain-containing protein [Methanococcus voltae A3]
 gi|297378885|gb|ADI37040.1| Radical SAM domain protein [Methanococcus voltae A3]
          Length = 389

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 77/341 (22%), Positives = 147/341 (43%), Gaps = 41/341 (12%)

Query: 80  VYSFLGRIRNL----KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135
           +YSF+   +++     N   K   +++++  G  A    E+ L+     + V+  +    
Sbjct: 59  IYSFMSLQKSIVLQELNILRKNFKNIVLIAGGPHASGAPEDTLKMG--FDYVIIGEGEIS 116

Query: 136 LPELLERARFGKRVVDTDYSVEDKFERLSIVDG--GYNRKRGVTAFLTIQEGCDKFCTFC 193
           LP+L+ +       ++ +  +E++  +   +D   GY++   + A + I  GC   C FC
Sbjct: 117 LPDLVNK-------IENNQKIENRIIKGVPIDSFEGYDKIYPL-APIEITRGCPYNCRFC 168

Query: 194 VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-GLDGEKCTFSDLLY 252
             P   G  I     + +D+  K++ N + +I  +  N  ++  K           +LL 
Sbjct: 169 QTPQIFGKNIRH---RKIDDIVKIVKN-MKDIRFVTPNALSYGSKYATKPNLEKLEELLK 224

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY-----LHLPVQSGSDRILKSMN 307
            LSE K   RL +  + P ++    I     L++++ Y     LH   QSG D +LK + 
Sbjct: 225 KLSEFKE--RL-FLGTFPSEVRPEFINEE-TLNLILTYCDNKYLHFGAQSGCDEMLKYIR 280

Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL----VDKIGYAQAF 363
           R HT  +    ID  +  +  +    DFI GFP ET ++   +++L    + K G   A 
Sbjct: 281 RGHTVNDVLNAIDLCKKNK--LMPKVDFIFGFPNETIENRLKSIELMKYIIKKNGTVHAH 338

Query: 364 SFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVS 404
            F     +  PG+   ++    +  E +  L    ++ Q+S
Sbjct: 339 YF-----MPLPGTYFEKEKPTELDKETIKILGSMAKKGQIS 374


>gi|163751959|ref|ZP_02159171.1| hypothetical protein KT99_01389 [Shewanella benthica KT99]
 gi|161328175|gb|EDP99341.1| hypothetical protein KT99_01389 [Shewanella benthica KT99]
          Length = 308

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 41/69 (59%), Gaps = 2/69 (2%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +L L +QS +D+ LK +NR HT  +YR  + R R+    + + +  I+G PGE+  D+ +
Sbjct: 142 WLELGLQSANDKTLKRINRGHTYNDYRDTVLRARA--KGLKVCTHLILGLPGESHQDYLS 199

Query: 350 TMDLVDKIG 358
           +++ V   G
Sbjct: 200 SLEAVLSTG 208


>gi|322418328|ref|YP_004197551.1| Radical SAM domain-containing protein [Geobacter sp. M18]
 gi|320124715|gb|ADW12275.1| Radical SAM domain protein [Geobacter sp. M18]
          Length = 568

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 77/337 (22%), Positives = 127/337 (37%), Gaps = 58/337 (17%)

Query: 56  VNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGE 115
              +D A  +VL   H      E+               ++  G+L  +V G     EGE
Sbjct: 84  AKELDPASFVVLGGPHATHSWQEQ---------------LERHGELDAIVLG-----EGE 123

Query: 116 EILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRG 175
           E L  + +V      +    +P L  R   G+ V+    +   + +RL           G
Sbjct: 124 ETL--AELVEARAAGRALSSVPGLAWR-EGGRGVLTPSRAPITELDRLPSPAEDPGETIG 180

Query: 176 V-----TAFLTIQEGCDKFCTFCVVP--YTRGIEISRSLSQVVDEARKLIDN-GVCEITL 227
           V       F+    GC   C FC  P  + RG+   RS + VV E R L +  G+   + 
Sbjct: 181 VDLRRQLEFVITSRGCPASCLFCSSPLFWGRGVRF-RSPASVVQELRMLKERYGLIYFSF 239

Query: 228 LGQNVNAWRGKGLDGEKCTFSD-----LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHG 282
                 A R + L  E C   +     +L++       V      +  R   +C+     
Sbjct: 240 RDDTFTANRARVL--EICRLIEEQRLHILWNCQSRVNAVDQEMLVAMKRAGCECI----- 292

Query: 283 DLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGE 342
                       V+SGS  +LK++ +R    +  +    +R V   I +S   I G PGE
Sbjct: 293 ---------QFGVESGSPEMLKALGKRILPADVERAAAAVRRV--GINLSVYLITGIPGE 341

Query: 343 TDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            + D + T+ L+D+I   +    + SP +  PG+ +L
Sbjct: 342 GEGDLQQTVRLIDRI---RPQDGQVSPLVYYPGTELL 375


>gi|218506756|ref|ZP_03504634.1| hypothetical protein RetlB5_03679 [Rhizobium etli Brasil 5]
          Length = 129

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 1/87 (1%)

Query: 336 IVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQ 395
           I GFP ET++ F   + L ++ G A    F YSPR GTP + M  Q+D ++  +R   L+
Sbjct: 2   IAGFPTETEEMFDNAVRLAEEAGIAHLHVFPYSPRPGTPAARM-PQLDRSLVKDRAARLR 60

Query: 396 KKLREQQVSFNDACVGQIIEVLIEKHG 422
                   S  D  VG    +L+E +G
Sbjct: 61  ATGHRLHQSHLDGMVGTRQWLLVENNG 87


>gi|114564114|ref|YP_751628.1| putative radical SAM protein [Shewanella frigidimarina NCIMB 400]
 gi|114335407|gb|ABI72789.1| conserved hypothetical radical SAM protein [Shewanella
           frigidimarina NCIMB 400]
          Length = 322

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 39/69 (56%), Gaps = 2/69 (2%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +L L +Q+ ++  LK +NR H   EYRQ + + R+    I + +  I+G PGET  D+  
Sbjct: 155 WLELGLQTANNHTLKRINRGHQLCEYRQTVKKARA--KGIKVCTHLILGLPGETSADYFN 212

Query: 350 TMDLVDKIG 358
           ++  V  IG
Sbjct: 213 SLQTVLGIG 221


>gi|126465434|ref|YP_001040543.1| radical SAM domain-containing protein [Staphylothermus marinus F1]
 gi|126014257|gb|ABN69635.1| Radical SAM domain protein [Staphylothermus marinus F1]
          Length = 450

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 58/229 (25%), Positives = 103/229 (44%), Gaps = 28/229 (12%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK 238
           + I  GC   C +C V Y  G  +  RS+  +V+    +I   V +I  +  +  A+  K
Sbjct: 175 IEISRGCPYGCKYCQVSYMHGFYMRHRSIDNIVEYTGYMIRKNVRDIRFISPDSLAYGLK 234

Query: 239 GLDGEKCT--FSDLLYSLSEI---KGLVRLRYTTSHP---------RDMSDCLIKAHGDL 284
            +  +       +LL+ L +    K   R+ Y  S P         RD +  L K   + 
Sbjct: 235 TISRKPRLDLIEELLFRLYKKYVEKKNARIFYG-SFPSEVRPEHLTRDAARILRKYVANK 293

Query: 285 DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETD 344
           +++     L  Q+GS+R+L+ + R+H+  +    ++   +V+     + D+I+G PGET 
Sbjct: 294 NII-----LGAQTGSNRLLRLIGRKHSIEDVYSAVEN--AVKYGFIPNVDYIIGLPGETR 346

Query: 345 DDFRATMDLVDK---IGYAQAFSFKYSPRLGTPGSNMLE-QVDENVKAE 389
           +D   T+  + K   IG A+     + P  G+P + M   +V   VK E
Sbjct: 347 EDLYETLRSIKKLVSIG-ARIHLHVFLPLPGSPYAWMPPGKVPSWVKKE 394


>gi|37520860|ref|NP_924237.1| Mg-protoporphyrin IX monomethyl ester oxidative cyclase
           [Gloeobacter violaceus PCC 7421]
 gi|35211855|dbj|BAC89232.1| glr1291 [Gloeobacter violaceus PCC 7421]
          Length = 457

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 65/147 (44%), Gaps = 17/147 (11%)

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           ++SGS R+L+ M +R +  + RQ I    SV   I  ++ F +G+PGE  +D  AT+  +
Sbjct: 302 IESGSPRVLRQMGKRFSPQDVRQAIQDANSV--GIRAAAFFQIGYPGERTEDILATLQFI 359

Query: 355 DKIGYAQ-AFSFKYSPRLGTPGSNMLEQV--------DENVKAERL--LCLQKKLREQQV 403
             +     +F+  Y      PG+ + ++V        +E  + +R     L  K    Q+
Sbjct: 360 PTLPLDYLSFTITYP----LPGTKLFDRVVSEGRLSPEEQAEWKRAGHNVLTYKADHSQL 415

Query: 404 SFNDACVGQIIEVLIEKHGKEKGKLVG 430
               A        L EKH    GK +G
Sbjct: 416 KLRSAIYAARARFLAEKHLGWLGKTLG 442


>gi|302519850|ref|ZP_07272192.1| radical SAM family protein [Streptomyces sp. SPB78]
 gi|302428745|gb|EFL00561.1| radical SAM family protein [Streptomyces sp. SPB78]
          Length = 499

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 50/90 (55%), Gaps = 10/90 (11%)

Query: 293 LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM- 351
           L ++SGSDRIL+ M++R TA     +  R+  +   I +   FI+G+PGE  +D  AT+ 
Sbjct: 336 LGIESGSDRILRDMDKRITADMTESVTHRL--LERGINVKGYFILGYPGEQREDLDATVR 393

Query: 352 ------DLVDK-IGYAQAFSFKYSPRLGTP 374
                 DL D+  G  +A  F++ P  GTP
Sbjct: 394 HIHNLWDLADQNPGTFRASVFEFRPYPGTP 423


>gi|330447437|ref|ZP_08311086.1| radical SAM superfamily protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328491628|dbj|GAA05583.1| radical SAM superfamily protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 312

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 50/102 (49%), Gaps = 9/102 (8%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +L L +Q+ +D+ LK +NR H    Y  I  R R++   I + +  IVG PG+T  D   
Sbjct: 141 WLELGLQTANDKTLKRINRGHDFACYEAITQRARAL--GIKVCTHLIVGLPGDTKAD--- 195

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERL 391
            +D ++K+  A     K  P     GS M     +  KAERL
Sbjct: 196 NIDTINKVVAAGVDGIKLHPLHIVEGSKM----GQAFKAERL 233


>gi|218883344|ref|YP_002427726.1| Fe-S oxidoreductase family protein [Desulfurococcus kamchatkensis
           1221n]
 gi|218764960|gb|ACL10359.1| Fe-S oxidoreductase family protein [Desulfurococcus kamchatkensis
           1221n]
          Length = 439

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 52/216 (24%), Positives = 100/216 (46%), Gaps = 22/216 (10%)

Query: 174 RGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDNGVCEITLLGQNV 232
           R +   L I  GC   C +C V Y  G+    RS+ ++V   +++   GV +   +  + 
Sbjct: 169 RRIINPLEITRGCPYGCLYCQVSYIHGMSYRHRSIEKIVFYVKEMARIGVRDYRFITPDS 228

Query: 233 NAWRGKGLDGEKCT--FSDLLYSL-SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV--- 286
            ++    +  E  T    +LL S+ S ++ +    +  S P ++       H + DV   
Sbjct: 229 LSYGLTKISREPDTGLIEELLSSIHSALRSIGGRIFYGSFPSEVR----PEHVNKDVVRV 284

Query: 287 LMPYLH-----LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD-IAISSDFIVGFP 340
           L  Y++     +  QSGS+R+L+ + R H+      +++ ++ +  +    S D I+G P
Sbjct: 285 LRKYVNNREIIVGAQSGSNRVLRLIRRGHSV---EDVLNAVKEISENGFTPSVDIILGIP 341

Query: 341 GETDDDFRATMDLVDKI--GYAQAFSFKYSPRLGTP 374
           GET +D   T++L+D++     +     Y P  G+P
Sbjct: 342 GETREDQELTLELIDEVIRNNGRIHIHYYLPLPGSP 377


>gi|269469069|gb|EEZ80624.1| Fe-S oxidoreductase [uncultured SUP05 cluster bacterium]
          Length = 303

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 2/69 (2%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +L L +QS  D+ LK +NR H   EYRQ +   R     + + +  I+G PGE +  F+A
Sbjct: 143 WLELGLQSAFDKTLKRINRGHGFEEYRQTLLAARG--KGLRVCTHLIIGLPGENETHFKA 200

Query: 350 TMDLVDKIG 358
           T+  V  +G
Sbjct: 201 TLQRVLNLG 209


>gi|157960842|ref|YP_001500876.1| putative radical SAM protein [Shewanella pealeana ATCC 700345]
 gi|157845842|gb|ABV86341.1| conserved hypothetical radical SAM protein [Shewanella pealeana
           ATCC 700345]
          Length = 309

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 6/90 (6%)

Query: 270 PRDMSDCLIKAHGD-LDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
           P ++ + L+    D +DV   +L L +QS +D  LK +NR H    Y   +  IR+ +  
Sbjct: 124 PNEVLELLVGYQNDGVDV---WLELGLQSANDATLKKINRGHDFAAYEDTV--IRARKLG 178

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           I + +  I+G PGE  +D+  T+D V ++G
Sbjct: 179 IKVCTHLILGLPGEAHEDYLQTLDKVLRVG 208


>gi|312137248|ref|YP_004004585.1| radical sam domain protein [Methanothermus fervidus DSM 2088]
 gi|311224967|gb|ADP77823.1| Radical SAM domain protein [Methanothermus fervidus DSM 2088]
          Length = 444

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 88/375 (23%), Positives = 151/375 (40%), Gaps = 52/375 (13%)

Query: 100 DLLVVVAGCVAQAEGEEILRRSPIVNVVV---GPQTYYRLPELLERARFGKRVVDT--DY 154
           ++L V+ G  A     + LR  P ++VVV   G +T+  L   LE    GK+ ++     
Sbjct: 66  NILTVIGGPHATFLPIKTLRECPELDVVVIGEGEETFKEL--ALEYESKGKKCLEKIRGI 123

Query: 155 SVEDKFERLSIVDG---------------------GYNRKRGVTAFLTIQEGCDKFCTFC 193
           +  D  ERL I D                       YN        ++   GC   C +C
Sbjct: 124 AYRDNDERLHINDPRPLIENLDEIPFPARHLVPFKEYNLSEETGGIIS-SRGCPYNCEYC 182

Query: 194 VVPYTRGIEIS-RSLSQVVDEARKLI-DNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLL 251
                 G     RS   +VDE  +L+ D  V EIT L       R +    E C  ++L 
Sbjct: 183 SSSKMMGKRFRYRSAENIVDEIEELVNDYNVREITFLDDTFTIHRRR--IEEFC--NELK 238

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
               +I   +  R  T +   + +  +K  G     +  ++   +SGS R+L  M +  T
Sbjct: 239 NRDLDIDFTISSRVDTINRDTLKN--LKTVG-----LNRIYYGAESGSQRVLNLMKKGIT 291

Query: 312 AYEYRQIIDRIRSVRP-DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370
               +QI D ++  +  ++   + F+ G+PGET D+   T+D   K+          +P 
Sbjct: 292 L---KQIKDAVKVAKNLNLQTVTSFMFGYPGETLDEMNKTIDFSIKLDPDYCQYSILTPF 348

Query: 371 LGTPGSNMLEQ---VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK 427
            GTP    L++   ++EN   E    L   ++ +++  +   V +I+E    K       
Sbjct: 349 PGTPIYYKLKRKGLINEN--WEEYTVLNPVIKYEKLGLSKKLVKKILEKAYVKFYARPSY 406

Query: 428 LVGRSPWLQSVVLNS 442
           L+ + PW+  V + +
Sbjct: 407 LI-KHPWMFKVFIET 420


>gi|197335171|ref|YP_002156923.1| radical SAM protein, family [Vibrio fischeri MJ11]
 gi|197316661|gb|ACH66108.1| radical SAM protein, family [Vibrio fischeri MJ11]
          Length = 313

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 2/69 (2%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +L L +Q+ +D+ LK +NR H    Y  I  + RS+   I + +  I+G PG+T DD R 
Sbjct: 141 WLELGLQTANDKTLKRINRGHDFACYDAITRKARSL--GIKVCTHLIIGLPGDTRDDNRQ 198

Query: 350 TMDLVDKIG 358
           T+D V   G
Sbjct: 199 TLDKVLATG 207


>gi|148265681|ref|YP_001232387.1| putative radical SAM protein [Geobacter uraniireducens Rf4]
 gi|146399181|gb|ABQ27814.1| conserved hypothetical radical SAM protein [Geobacter
           uraniireducens Rf4]
          Length = 319

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/65 (43%), Positives = 35/65 (53%), Gaps = 2/65 (3%)

Query: 293 LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352
           L +QS  D ILK +NR HT  EY   ++RI      I I +  I GFPGET   F  T D
Sbjct: 152 LGLQSMDDAILKQINRGHTLSEYLNTVNRIAGR--GIDICTHLIYGFPGETHAGFLKTAD 209

Query: 353 LVDKI 357
           L+  +
Sbjct: 210 LIASL 214


>gi|59712730|ref|YP_205506.1| Fe-S oxidoreductase [Vibrio fischeri ES114]
 gi|59480831|gb|AAW86618.1| predicted Fe-S oxidoreductase [Vibrio fischeri ES114]
          Length = 313

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 2/69 (2%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +L L +Q+ +D+ LK +NR H    Y  I  + RS+   I + +  I+G PG+T DD R 
Sbjct: 141 WLELGLQTANDKTLKRINRGHDFACYDAITRKARSL--GIKVCTHLIIGLPGDTRDDNRQ 198

Query: 350 TMDLVDKIG 358
           T+D V   G
Sbjct: 199 TLDKVLATG 207


>gi|124516092|gb|EAY57601.1| putative radical SAM superfamily transporter [Leptospirillum
           rubarum]
          Length = 445

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 79/343 (23%), Positives = 143/343 (41%), Gaps = 44/343 (12%)

Query: 54  ERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAE 113
           E +    D DL+ + T      +A++ Y   GR R  K         + VV+ G  A   
Sbjct: 56  EEIPWNGDFDLVAITTT---TGSAQRAYQIAGRFRERK---------IPVVMGGFHATLH 103

Query: 114 GEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGY--- 170
             EIL  +   +VVVG +      ELL+  R GK  + + Y  E   +  S+    Y   
Sbjct: 104 PAEILTHAD--SVVVG-EAENVWGELLDDVRDGK--LRSIYKAEQPCDMKSLPRPKYELL 158

Query: 171 NRKRGVTAFLTIQ--EGCDKFCTFCVVPYT-RGIEISRSLSQVVDEARKLIDNGVCEITL 227
           + KR     + IQ   GC+  C FC VP    G    R +  +V E  +       +  +
Sbjct: 159 DWKRYRVHLMPIQATRGCNYHCDFCEVPVVYNGAYRMRPIEDIVQEIEE-------QKRI 211

Query: 228 LGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT--TSHPRDMSDCLIKAHGDLD 285
            G N   +    L G+     +L  +L  +       +T  T+H  ++ D  I+A     
Sbjct: 212 TGNNQFQFIDDQLTGKHTFARELFKALRPLGITWSCLWTLNTNHDEELLDLAIQAGCQ-- 269

Query: 286 VLMPYLHLPVQS-GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETD 344
               ++++ ++S   D + +   +++   +Y  ++  +   +  +  S + + G   +T 
Sbjct: 270 ----HVNIGMESINQDNLNEIHKKQNHVKDYMTLLKAME--KRGLLYSLNLMFGLDHDTP 323

Query: 345 DDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
           D F AT   ++++    AF    SPR GTP   + E++D+ ++
Sbjct: 324 DVFEATYRFLEEVRAPMAFFSIVSPREGTP---LRERLDKELR 363


>gi|297527303|ref|YP_003669327.1| Radical SAM domain protein [Staphylothermus hellenicus DSM 12710]
 gi|297256219|gb|ADI32428.1| Radical SAM domain protein [Staphylothermus hellenicus DSM 12710]
          Length = 535

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 70/307 (22%), Positives = 135/307 (43%), Gaps = 41/307 (13%)

Query: 190 CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSD 249
           C FC VPY  G   SRS+  +V+E R+LI +G   I L   +   + G+ L  +    +D
Sbjct: 237 CGFCSVPYMFGPARSRSIDSIVEEIRELIIHGAKRIVLSAPDFLDY-GRDLLVKPKPLTD 295

Query: 250 -------------LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL----- 291
                        LL S+ EI+  VR R T     ++  CL+       +L  YL     
Sbjct: 296 PCYPEPNIEMIEALLSSIFEIEE-VRNRNTRIFIENIKACLVN-EDVARILGKYLSGTTI 353

Query: 292 HLPVQSGSDR-----ILKSMNRRHTAYEYRQI-IDRIRSVRPDIAISSDFIVGFPGETDD 345
           H+ +++G  +     + K ++  H    Y+ + + +   +RP + +    + G P   + 
Sbjct: 354 HIGLETGDTKYNSLVLGKPISVEHV---YKAVKLLKAYGLRPYVYL----MYGLPLANEK 406

Query: 346 DFRATMDLVDK---IGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQ 402
            +R T+  ++K   +G  +   +K+ P  GT   ++   +  + +   L  ++KK+ +  
Sbjct: 407 VYRKTLKTINKLSSLGVEKITLYKFVPLPGTAFQDLKPDIKRHSRIINL--IKKKVEKHN 464

Query: 403 VSFNDACVGQIIEV-LIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKIS 461
           +    + +G+ I V L+  +GK  G  +   P +    L S   +  + + V I DV   
Sbjct: 465 LMSKKSLIGRKIHVLLLYNNGKYYGYPINHGPTVFVKGLTSPRFSGCEAL-VEIYDVAPR 523

Query: 462 TLYGELV 468
            ++G+ +
Sbjct: 524 FVWGKFI 530


>gi|213622044|ref|ZP_03374827.1| hypothetical protein SentesTyp_32781 [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
          Length = 87

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 10/90 (11%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  FV S GC  N+ DS R+     ++GY+ V   DDAD++++NTC   + A ++    
Sbjct: 8   PKIGFV-SLGCPKNLVDSERILTELRTEGYDVVPHYDDADMVIVNTCGFIDSAVQESLEA 66

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAE 113
           +G   N +N +        V+V GC+   E
Sbjct: 67  IGEALN-ENGK--------VIVTGCLGAKE 87


>gi|323525903|ref|YP_004228056.1| hopanoid biosynthesis associated radical SAM protein HpnJ
           [Burkholderia sp. CCGE1001]
 gi|323382905|gb|ADX54996.1| hopanoid biosynthesis associated radical SAM protein HpnJ
           [Burkholderia sp. CCGE1001]
          Length = 473

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 56/211 (26%), Positives = 93/211 (44%), Gaps = 35/211 (16%)

Query: 185 GCDKFCTFCVVPYTRGIEI--SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG 242
           GC   CTFC+ P T G     +RS+  V++E + + DN + E+            K +  
Sbjct: 205 GCRSKCTFCLWPQTVGGHRYRTRSVENVLEEVKWIRDN-MPEV------------KEIMF 251

Query: 243 EKCTFSDLLYSLSEI-KGLVRLRYTTSHPRDMSDCLIKAHGDLDVL-------MPYLHLP 294
           +  TF+D    + EI +GL +L  T S       C  KA+     L       +  L + 
Sbjct: 252 DDDTFTDFKPRVEEIARGLGKLGVTWS-------CNAKANVPYSTLKIMKENGLRLLLVG 304

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
            +SG D+IL ++ +       R+  +  R +   I I   FI+G PGET +  + T++  
Sbjct: 305 YESGDDQILLNIKKGLRTDIARRFSEDCRKL--GIKIHGTFILGLPGETQETIQKTIEYA 362

Query: 355 DKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            +I      + + S     PG+ + +Q  EN
Sbjct: 363 KEI---NPHTIQVSLAAPYPGTRLYDQAVEN 390


>gi|20094368|ref|NP_614215.1| Fe-S oxidoreductase family protein [Methanopyrus kandleri AV19]
 gi|38258812|sp|Q8TWU9|Y932_METKA RecName: Full=Uncharacterized protein MK0932
 gi|19887436|gb|AAM02145.1| Fe-S oxidoreductase family protein [Methanopyrus kandleri AV19]
          Length = 523

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 51/201 (25%), Positives = 88/201 (43%), Gaps = 25/201 (12%)

Query: 184 EGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-G 242
           EG    C FC VP   G   SR L++VV E R L+  G+  + L   +V       LD G
Sbjct: 214 EGIPPGCGFCSVPSIFGPTRSRPLNEVVREVRGLVREGIRRVVLSASDV-------LDYG 266

Query: 243 EKCTFSDLLYSLSEIKGLVR-LRYTTSH-----PRDMSDCLIKAHGDLDVLMPY-----L 291
                +D       ++ L R LR T+ H       ++  CL+      ++L  Y     +
Sbjct: 267 RGDLLTDPRTPPPNVEALRRLLRRTSKHVDVLFVENVKACLLNRE-IAELLGEYCRGTSV 325

Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT- 350
            + V++G  R+L+++ +  T  E  + I  +R  R  +   + F+ G PG+T    + T 
Sbjct: 326 SVGVETGDPRLLRAIGKPSTLKEALRAIRLLR--RAGLRPHAYFVYGLPGQTMKSAKLTA 383

Query: 351 --MDLVDKIGYAQAFSFKYSP 369
             M    ++G  +   +++ P
Sbjct: 384 KAMKRAVEMGAEKITVYRFRP 404


>gi|320100689|ref|YP_004176281.1| Radical SAM domain-containing protein [Desulfurococcus mucosus DSM
           2162]
 gi|319753041|gb|ADV64799.1| Radical SAM domain protein [Desulfurococcus mucosus DSM 2162]
          Length = 527

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 58/247 (23%), Positives = 108/247 (43%), Gaps = 33/247 (13%)

Query: 140 LERARFGKRVVDTDYSVEDKFERLS--IVDGGYNRKRGVTAFLTIQEGCDKF----CTFC 193
            E+AR    ++   Y + DK  +L   IV    N  R +   +    GC ++    C+FC
Sbjct: 153 FEKAR--PWLLRESYELADKAFKLGARIVLQHPNYGRNLIVEVETYRGCSRWLTGGCSFC 210

Query: 194 VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQ-NVNAWRGKGLDGEKC------T 246
           + P   G  I R L  +V+EA  L   GV  I L  Q ++ A+  +    E+        
Sbjct: 211 IEP-RYGRPIMRGLKGIVEEAEALYSLGVRHIRLGRQPDILAYMSEDTGREEFPRPNPEA 269

Query: 247 FSDLLYSLSEI-KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP-------VQSG 298
              L + +  +  GLV L     +P  +   + ++   L  ++ Y H P       ++S 
Sbjct: 270 LEKLFHGIRSVAPGLVTLHIDNVNPGTIVSHVDESVKALKTIVKY-HTPGDVAALGIESF 328

Query: 299 SDRILKSMNRR---HTAYEYRQIIDRIRSVR-----PDIAISSDFIVGFPGETDDDFRAT 350
            ++++K+ N +     A E  +I++R+  +R     P +    + I G PGE+ + +R  
Sbjct: 329 DEKVVKANNLKVGPEEALEAIRIVNRVGGLRGWNGMPHLLPGVNLIYGLPGESRETYRVN 388

Query: 351 MDLVDKI 357
           ++ + +I
Sbjct: 389 LEYLTRI 395


>gi|86741581|ref|YP_481981.1| radical SAM family protein [Frankia sp. CcI3]
 gi|86568443|gb|ABD12252.1| Radical SAM [Frankia sp. CcI3]
          Length = 613

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 49/188 (26%), Positives = 83/188 (44%), Gaps = 31/188 (16%)

Query: 293 LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352
           L V+SGS+R+LK M +R T    R ++ R+      I++   FI+GFP ET ++  AT+ 
Sbjct: 327 LGVESGSERLLKYMGKRITPDMTRSVVRRLNER--GISVKGYFILGFPTETREELAATVR 384

Query: 353 LVDKI--------GYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQ--- 401
            V ++        G  +A  F++ P  GTP  + +        A+ L      L E    
Sbjct: 385 HVRELWEVADGQPGNFRASVFEFRPYPGTPEWDRIVATGRYQPAQLLAYTAVDLTEGGLD 444

Query: 402 -------------QVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIG 448
                         + F +A V ++   L+E   ++ G L    P L+   L+S+   + 
Sbjct: 445 EAMRGRDEFNFSVNIQFGEATVDEVRAALVELSREQPGML---RPQLRE--LDSQTAVLH 499

Query: 449 DIIKVRIT 456
             I+ R+T
Sbjct: 500 QHIRQRLT 507


>gi|256811437|ref|YP_003128806.1| Radical SAM domain protein [Methanocaldococcus fervens AG86]
 gi|256794637|gb|ACV25306.1| Radical SAM domain protein [Methanocaldococcus fervens AG86]
          Length = 500

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 68/294 (23%), Positives = 125/294 (42%), Gaps = 26/294 (8%)

Query: 190 CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQN-VNAWRGKGLDG---EKC 245
           C FC VP   G   SR    ++ E   L+  GV  I L   + ++  RGK L      + 
Sbjct: 216 CGFCSVPSVFGYARSRDEEDILKEVEDLLKEGVKRIVLSAPDFLDYKRGKKLINPYFPEP 275

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPV----QSGSDR 301
            +  +   LS+ K L   +Y  +   +     +      ++   YL  P+    +SG +R
Sbjct: 276 NYEAIESLLSKCKDLAD-KYNANVLIENIKANLFNEKVAEIFSKYLKTPIYIGCESGDER 334

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA- 360
             K + R  T  +  + +   +  + ++     FI G PGE +   + T++ + KI +  
Sbjct: 335 HCKLLGRPTTPEDVLKAVKIAK--KYNLKAQVYFIYGLPGENEKVAKNTVNFMHKIKHYI 392

Query: 361 -QAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI- 418
            +   +K+ P    P S   +    N+    LL +++   +  +      +G+++EV+I 
Sbjct: 393 DKITVYKFRP---LPMS-AFQNFKPNITKHSLL-IRETANKINLEIKKKYIGRVLEVIIS 447

Query: 419 EKHGKEKGKLVGRSPWLQS----VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           E+H + K   +    +LQ     VV+      IG+I KV+IT      L G ++
Sbjct: 448 ERHFRNKRDAIA---YLQDSGLMVVVKDGAKCIGEIKKVKITKAYEKYLEGRIL 498


>gi|304437413|ref|ZP_07397372.1| conserved hypothetical protein [Selenomonas sp. oral taxon 149 str.
           67H29BP]
 gi|304369669|gb|EFM23335.1| conserved hypothetical protein [Selenomonas sp. oral taxon 149 str.
           67H29BP]
          Length = 569

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 94/219 (42%), Gaps = 28/219 (12%)

Query: 173 KRGVTAFLTIQ--EGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQ 230
           + G+   +T+Q   GC   C +C V +   +   RS+  V DE + L D GV +   +  
Sbjct: 45  QSGIRYEMTMQATRGCPYRCFYCDVQHLTPMHRRRSVQNVFDEVKYLHDIGVRKSEFIDD 104

Query: 231 --NVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL- 287
             NVN    K     K   S +  S     GL              D L +   DL V  
Sbjct: 105 AFNVNVKEFKAF-FRKVIDSKMDMSFYFQSGL------------RGDLLDEEAIDLMVEG 151

Query: 288 -MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDD 346
               ++L ++S S R+ K M +       R+ +D I    P I I  + + GFP ET+++
Sbjct: 152 GTKSMNLSLESASPRLQKLMGKYLRIERLRENLDYIVRTYPQIIIGLNAMHGFPTETEEE 211

Query: 347 FRATMDLVDKIG---YAQAFSFKYSPRLGTPGSNMLEQV 382
            +AT+D V ++    +AQ  + +  P      ++ LEQV
Sbjct: 212 AQATVDFVMQVKWLHFAQLHNVRIFP------NSRLEQV 244


>gi|260592159|ref|ZP_05857617.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Prevotella veroralis F0319]
 gi|260535793|gb|EEX18410.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Prevotella veroralis F0319]
          Length = 400

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 36/115 (31%), Positives = 63/115 (54%), Gaps = 9/115 (7%)

Query: 269 HPRDMSDCLIKAHGDLDVL-MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
           +P D++D  ++   DL  L +  + + VQ+ SD  L+ ++RRHTA E    I R+R +  
Sbjct: 105 NPDDVTDTFVR---DLQKLPINRISMGVQTFSDERLRFLHRRHTADEVELAIKRLRKIGI 161

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIG--YAQAFSFKYSPRLGTPGSNMLE 380
              IS D + GFP ET +++++ +D   ++   +  A+S  Y    GTP   +L+
Sbjct: 162 H-NISIDLMFGFPNETMNEWKSDIDRAIQLNVEHLSAYSLMYEE--GTPLYQLLK 213


>gi|148260830|ref|YP_001234957.1| radical SAM domain-containing protein [Acidiphilium cryptum JF-5]
 gi|146402511|gb|ABQ31038.1| Radical SAM domain protein [Acidiphilium cryptum JF-5]
          Length = 474

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 79/355 (22%), Positives = 135/355 (38%), Gaps = 64/355 (18%)

Query: 62  ADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRS 121
           A+L++++T            SF   ++     R +  G  +  +   VA   GE + R +
Sbjct: 70  AELVIIHTS---------TPSFANDVKVAAQIRAENPGVKIGFIGAKVAVQAGESLERAA 120

Query: 122 PIVNVVVGPQTYYRLPELLERARF------------GKRVVDTDYSVEDKFERLSIVDGG 169
           P V+ V   +  + + E+ E   F            G+ V + D    +  + L  V   
Sbjct: 121 P-VDFVARNEFDFTIKEIAEGKPFAEVEGISWRNEAGEIVHNQDRPTLEDMDSLPFVADV 179

Query: 170 YNRKRGVTAF-----------LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLI 218
           Y R   +  +           L    GC   CTFC+ P T G    R+ S         +
Sbjct: 180 YKRDLKIEDYFIGYLMHPYVSLYTGRGCKSRCTFCLWPQTVGGHRYRTRS---------V 230

Query: 219 DNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI-KGLVRLRYTTSHPRDMSDCL 277
           ++ + E+  + ++    R    D +  TF+D L     I + L +L  T S       C 
Sbjct: 231 EHVIAEVKQIQRDFPQMRELFFDDD--TFTDNLPRAEAIARELGKLGVTWS-------CN 281

Query: 278 IKAHGDLDVL-------MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330
            KA+   D L       +  L +  +SG+ +IL ++ +       ++       +   I 
Sbjct: 282 AKANVPRDTLKVLRDNGLRLLLVGYESGNQQILHNIKKGMRIEVAKKFTKDCHDL--GIK 339

Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
           I   FI+G PGET D  R T+D   +I      + + S     PG+ +  Q  EN
Sbjct: 340 IHGTFILGLPGETQDTIRETIDFAKEI---NPHTIQVSLAAPYPGTFLYNQAVEN 391


>gi|160885179|ref|ZP_02066182.1| hypothetical protein BACOVA_03177 [Bacteroides ovatus ATCC 8483]
 gi|156109529|gb|EDO11274.1| hypothetical protein BACOVA_03177 [Bacteroides ovatus ATCC 8483]
          Length = 335

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 52/172 (30%), Positives = 79/172 (45%), Gaps = 24/172 (13%)

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTT--SHPRDMSDCLIKAHGDLDVLMPY--LHLPVQSG 298
           EK  F  +  ++ E  GL   +  T  ++P D+S   ++    L    P+  L + +Q+ 
Sbjct: 25  EKEDFEQIFDTIREHYGLNHCQEITLEANPDDLSQEYLEMLSSL----PFNRLSMGIQTF 80

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA-ISSDFIVGFPGET----DDDFRATMDL 353
            D  LK + RRH A    + IDR R  + D   IS D I G PGET    ++D R  + L
Sbjct: 81  DDATLKLLRRRHNARTAIEAIDRCR--KADFQNISIDLIYGLPGETKERWENDLRQAISL 138

Query: 354 VDKIGYAQAFSFKYSPRLGTPGSNMLEQ-----VDENVKAERLLCLQKKLRE 400
              + +  A+   Y     TP  NML+Q     VDE+   E    L + L++
Sbjct: 139 --NVEHISAYHLIYEE--DTPIYNMLKQHQISEVDEDSSLEFFTLLIEHLQK 186


>gi|29827390|ref|NP_822024.1| methyltransferase [Streptomyces avermitilis MA-4680]
 gi|15824240|dbj|BAB69397.1| methyltransferase [Streptomyces avermitilis]
 gi|29604489|dbj|BAC68559.1| putative methyltransferase [Streptomyces avermitilis MA-4680]
          Length = 543

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 56/201 (27%), Positives = 84/201 (41%), Gaps = 20/201 (9%)

Query: 175 GVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQ--NV 232
           GVTA L     C   C+FC  P   G   + S+  V  E R + + GV  I  +    NV
Sbjct: 241 GVTAQLRTARSCAFKCSFCDYPSRAGALAAASVDTVRKELRAMAELGVKNIVFVDDTFNV 300

Query: 233 NAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY-TTSHPRDMSDCLIKAHGDLDVLMPYL 291
              R K    E C        + E  GL    Y   S+ RD     + A      +    
Sbjct: 301 PPKRFK----EICRMM-----IEEDLGLRWYSYFRCSNARDEEAFDLAAESGCSGVF--- 348

Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351
            L ++SG   IL +M++     +YR  ++R+     DI   +  IVGFPGE       T+
Sbjct: 349 -LGIESGDTEILANMHKLAQDSQYRVGLERLNER--DITTFASIIVGFPGENARTVSNTV 405

Query: 352 DLVD--KIGYAQAFSFKYSPR 370
           D ++  K  + +A ++  +PR
Sbjct: 406 DFLNETKPTFWRAQAWWANPR 426


>gi|39995475|ref|NP_951426.1| radical SAM family protein [Geobacter sulfurreducens PCA]
 gi|39982238|gb|AAR33699.1| radical SAM protein, TIGR01212 family [Geobacter sulfurreducens
           PCA]
 gi|298504475|gb|ADI83198.1| radical SAM domain iron-sulfur cluster-binding oxidoreductase,
           TIGR01212 family [Geobacter sulfurreducens KN400]
          Length = 305

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 2/69 (2%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +L L +Q+  DR L  +NR H A  ++   DR R  R  I + +  I+G PGETD D   
Sbjct: 143 WLELGMQTSHDRTLALLNRGHDAASFQDAADRCR--RRGIRLCAHVILGLPGETDADMLE 200

Query: 350 TMDLVDKIG 358
           T  +++ +G
Sbjct: 201 TAMMLNGVG 209


>gi|258591106|emb|CBE67401.1| Radical SAM domain protein precursor [NC10 bacterium 'Dutch
           sediment']
          Length = 453

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 58/222 (26%), Positives = 86/222 (38%), Gaps = 28/222 (12%)

Query: 160 FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP-YTRGIEISRSLSQVVDEARKLI 218
           F  L + +  Y    G  A L    GC   C FC++  Y +G              +K  
Sbjct: 181 FHLLDLRNYRYEILGGRFALLETTRGCHHRCHFCLLKMYGKGYR------------KKDP 228

Query: 219 DNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE--IKGLVRLRYTTSHPRDMSDC 276
           +  V E+T L +   A  G  +D E     D +  L E  +   +   +      D  D 
Sbjct: 229 EQVVHEVTHLVREAGAKTGYFIDLEFTAVRDDVRDLCERLVSAGLPFEWACQTRADYVD- 287

Query: 277 LIKAHGDLDVLMP-----YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAI 331
                G L  LM       +H  V+SGS RIL + N+R T  +  + I   +  +  I  
Sbjct: 288 -----GPLLKLMKRAGCRLIHFGVESGSPRILAATNKRITLEQIERGIAETK--QSGIDQ 340

Query: 332 SSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
              F+ GFPGET  D  AT+    ++    A     +P +GT
Sbjct: 341 LCFFMFGFPGETAGDMEATIAFAKRLSPTYASFHAVTPYMGT 382


>gi|326404224|ref|YP_004284306.1| hypothetical protein ACMV_20770 [Acidiphilium multivorum AIU301]
 gi|325051086|dbj|BAJ81424.1| hypothetical protein ACMV_20770 [Acidiphilium multivorum AIU301]
          Length = 474

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 79/355 (22%), Positives = 135/355 (38%), Gaps = 64/355 (18%)

Query: 62  ADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRS 121
           A+L++++T            SF   ++     R +  G  +  +   VA   GE + R +
Sbjct: 70  AELVIIHTS---------TPSFANDVKVAAQIRAENPGVKIGFIGAKVAVQAGESLERAA 120

Query: 122 PIVNVVVGPQTYYRLPELLERARF------------GKRVVDTDYSVEDKFERLSIVDGG 169
           P V+ V   +  + + E+ E   F            G+ V + D    +  + L  V   
Sbjct: 121 P-VDFVARNEFDFTIKEIAEGKPFAEVDGISWRNGAGEIVHNQDRPTLEDMDSLPFVADV 179

Query: 170 YNRKRGVTAF-----------LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLI 218
           Y R   +  +           L    GC   CTFC+ P T G    R+ S         +
Sbjct: 180 YKRDLKIEDYFIGYLMHPYVSLYTGRGCKSRCTFCLWPQTVGGHRYRTRS---------V 230

Query: 219 DNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI-KGLVRLRYTTSHPRDMSDCL 277
           ++ + E+  + ++    R    D +  TF+D L     I + L +L  T S       C 
Sbjct: 231 EHVIAEVKQIQRDFPQMRELFFDDD--TFTDNLPRAEAIARELGKLGVTWS-------CN 281

Query: 278 IKAHGDLDVL-------MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330
            KA+   D L       +  L +  +SG+ +IL ++ +       ++       +   I 
Sbjct: 282 AKANVPRDTLKVLRDNGLRLLLVGYESGNQQILHNIKKGMRIEVAKKFTKDCHDL--GIK 339

Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
           I   FI+G PGET D  R T+D   +I      + + S     PG+ +  Q  EN
Sbjct: 340 IHGTFILGLPGETQDTIRETIDFAKEI---NPHTIQVSLAAPYPGTFLYNQAVEN 391


>gi|301058656|ref|ZP_07199657.1| radical SAM domain protein [delta proteobacterium NaphS2]
 gi|300447220|gb|EFK10984.1| radical SAM domain protein [delta proteobacterium NaphS2]
          Length = 495

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 62/117 (52%), Gaps = 17/117 (14%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAIS-SDFIVGFPGETDDDFR 348
           +L L ++SGS +IL +M++R ++   +Q  + +R +     +S   FI+G+PGET   F 
Sbjct: 308 FLDLGLESGSQKILDNMDKRLSS---KQSFEAVRMLNDHGIVSRGSFIIGYPGETRGTFF 364

Query: 349 ATMDLVDKIG--YAQAFSFKYSP-----------RLGTPGSNMLEQVDENVKAERLL 392
            T+D +++ G  Y Q + F Y+            +L   GS  + +  ++V+A  LL
Sbjct: 365 ETIDFINESGLPYYQPYLFYYTANTLVHQEREERKLRGLGSAWVHETMDSVEASGLL 421


>gi|39995693|ref|NP_951644.1| radical SAM family protein [Geobacter sulfurreducens PCA]
 gi|39982457|gb|AAR33917.1| radical SAM protein, TIGR01212 family [Geobacter sulfurreducens
           PCA]
 gi|298504704|gb|ADI83427.1| radical SAM domain iron-sulfur cluster-binding oxidoreductase,
           TIGR01212 family [Geobacter sulfurreducens KN400]
          Length = 319

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 37/64 (57%), Gaps = 2/64 (3%)

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
           + L +QS  D IL+ +NR HT  EY + +DRI      IA+ +  I GFPGET + F  T
Sbjct: 150 IELGLQSMDDAILERINRGHTLDEYLRTVDRIAGR--GIALCTHLIYGFPGETREGFLKT 207

Query: 351 MDLV 354
             L+
Sbjct: 208 AHLL 211


>gi|46581422|ref|YP_012230.1| radical SAM/B12 binding domain-containing protein [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|46450844|gb|AAS97490.1| radical SAM/B12 binding domain protein [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|311235079|gb|ADP87933.1| Radical SAM domain protein [Desulfovibrio vulgaris RCH1]
          Length = 485

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 59/215 (27%), Positives = 90/215 (41%), Gaps = 49/215 (22%)

Query: 185 GCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK 244
           GC   CTFCV     GI +            + ID+ + E+ LL +          D   
Sbjct: 214 GCVNRCTFCVAHKNIGIRV------------RPIDSVIGEVDLLLRE--------YDAGY 253

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSH--PRDMSDC-------------LIKAHGDLDVLMP 289
             F D L++ S  K ++ L     H  P     C              + A G +D    
Sbjct: 254 IFFCDSLFT-SRKKRIIELSDALRHHFPGLRWGCEAHVNTIDEDSVRAMAAGGCVD---- 308

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSD--FIVGFPGETDDDF 347
            ++  ++SG DR+L ++N+R T     QI D IR V+    I++   FI+G PGE  +D 
Sbjct: 309 -MNFGIESGVDRLLTAVNKRQTTA---QIADAIRMVKRVSRINAIGLFILGLPGERPEDS 364

Query: 348 RATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
            AT+D    +    A   ++S     PGS + EQ+
Sbjct: 365 DATIDFACSLPLDMA---QFSILTPYPGSPIFEQL 396


>gi|170725584|ref|YP_001759610.1| putative radical SAM protein [Shewanella woodyi ATCC 51908]
 gi|169810931|gb|ACA85515.1| conserved hypothetical radical SAM protein [Shewanella woodyi ATCC
           51908]
          Length = 312

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 2/69 (2%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +L L +QS SD+ LK +NR HT  +Y   + R R+    I + +  I+G PGE   D+  
Sbjct: 142 WLELGLQSASDKTLKRINRGHTLADYLDTVTRARA--KGIKVCTHLILGLPGEEHQDYLN 199

Query: 350 TMDLVDKIG 358
           ++  V + G
Sbjct: 200 SLHAVLQAG 208


>gi|186475944|ref|YP_001857414.1| hopanoid biosynthesis associated radical SAM protein HpnJ
           [Burkholderia phymatum STM815]
 gi|184192403|gb|ACC70368.1| hopanoid biosynthesis associated radical SAM protein HpnJ
           [Burkholderia phymatum STM815]
          Length = 474

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 56/211 (26%), Positives = 91/211 (43%), Gaps = 35/211 (16%)

Query: 185 GCDKFCTFCVVPYTRGIEI--SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG 242
           GC   CTFC+ P T G     +RS+  V++E + + DN + E+            K +  
Sbjct: 206 GCRSRCTFCLWPQTVGGHRYRTRSVENVLEEVKWIRDN-MPEV------------KEIMF 252

Query: 243 EKCTFSDLLYSLSEI-KGLVRLRYTTSHPRDMSDCLIKAHGDLDVL-------MPYLHLP 294
           +  TF+D    + EI +GL +L  T S       C  KA+     L       +  L + 
Sbjct: 253 DDDTFTDFKPRVEEIARGLGKLGVTWS-------CNAKANVPYSTLKIMKENGLRLLLVG 305

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
            +SG D+IL ++ +       R+  +  R +   I I   FI+G PGET +  + T++  
Sbjct: 306 YESGDDQILLNIKKGLRTDIARRFSEDCRKL--GIKIHGTFILGLPGETKETIQKTIEYA 363

Query: 355 DKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
             I      + + S     PG+ +  Q  EN
Sbjct: 364 KDI---NPHTIQVSLAAPYPGTTLYRQAVEN 391


>gi|120601403|ref|YP_965803.1| magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase
           [Desulfovibrio vulgaris DP4]
 gi|120561632|gb|ABM27376.1| Magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase
           [Desulfovibrio vulgaris DP4]
          Length = 485

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 59/215 (27%), Positives = 90/215 (41%), Gaps = 49/215 (22%)

Query: 185 GCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK 244
           GC   CTFCV     GI +            + ID+ + E+ LL +          D   
Sbjct: 214 GCVNRCTFCVAHKNIGIRV------------RPIDSVIGEVDLLLRE--------YDAGY 253

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSH--PRDMSDC-------------LIKAHGDLDVLMP 289
             F D L++ S  K ++ L     H  P     C              + A G +D    
Sbjct: 254 IFFCDSLFT-SRKKRIIELSDALRHHFPGLRWGCEAHVNTIDEDSVRAMAAGGCVD---- 308

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSD--FIVGFPGETDDDF 347
            ++  ++SG DR+L ++N+R T     QI D IR V+    I++   FI+G PGE  +D 
Sbjct: 309 -MNFGIESGVDRLLTAVNKRQTTA---QIADAIRMVKRVSRINAIGLFILGLPGERPEDS 364

Query: 348 RATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
            AT+D    +    A   ++S     PGS + EQ+
Sbjct: 365 DATIDFACSLPLDMA---QFSILTPYPGSPIFEQL 396


>gi|90580602|ref|ZP_01236407.1| putative Fe-S oxidoreductase [Vibrio angustum S14]
 gi|90438260|gb|EAS63446.1| putative Fe-S oxidoreductase [Photobacterium angustum S14]
          Length = 312

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 50/102 (49%), Gaps = 9/102 (8%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +L L +Q+ +++ LK +NR H    Y  I  R R++   I + +  IVG PG+T  D   
Sbjct: 141 WLELGLQTANEKTLKRINRGHDFACYAAITQRARAL--GIKVCTHLIVGLPGDTKAD--- 195

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERL 391
            +D ++K+  A     K  P     GS M     +  KAERL
Sbjct: 196 NIDTINKVVAAGVDGIKLHPLHIVEGSKM----GQAFKAERL 233


>gi|116750654|ref|YP_847341.1| radical SAM domain-containing protein [Syntrophobacter fumaroxidans
           MPOB]
 gi|116699718|gb|ABK18906.1| Radical SAM domain protein [Syntrophobacter fumaroxidans MPOB]
          Length = 531

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 53/201 (26%), Positives = 89/201 (44%), Gaps = 20/201 (9%)

Query: 185 GCDKFCTFCVVPYTRGIEIS--RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG 242
           GC   C FC   + RG   +  + L  +V E  ++   G+  +  +  N    R    D 
Sbjct: 253 GCPCKCEFC--NFVRGDRPAHVKPLGVLVSELTRIAARGIKYVRFVDDNFRLGRN---DL 307

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
            +   + L   L+ +K +   R ++    D+   L+K  G ++V M      V+S    +
Sbjct: 308 NRVCEAFLEAGLN-LKWMSFFRASSLEGADLE--LLKRAGCIEVQMG-----VESADREV 359

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           L+ MN++     Y ++I R+  +   I  S  FIVGFPGET + F  T+D ++ +     
Sbjct: 360 LRRMNKKSDPDMYARVIGRL--LDAGIDCSCCFIVGFPGETRESFERTVDFIESMPNPSQ 417

Query: 363 ---FSFKYSPRLGTPGSNMLE 380
              FS+   P L  P S + E
Sbjct: 418 PGLFSWSIYPFLLVPLSPIYE 438


>gi|261211477|ref|ZP_05925765.1| hypothetical protein VCJ_001738 [Vibrio sp. RC341]
 gi|260839432|gb|EEX66058.1| hypothetical protein VCJ_001738 [Vibrio sp. RC341]
          Length = 312

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 2/69 (2%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +L L +Q+  D+ LK +NR H    Y +I  + RS+   I + +  IVG PGE   D  A
Sbjct: 141 WLELGLQTAHDQTLKRINRGHDFACYAEITAKARSL--GIKVCTHLIVGLPGEGRSDNLA 198

Query: 350 TMDLVDKIG 358
           T+  V K+G
Sbjct: 199 TLQQVLKVG 207


>gi|302346343|ref|YP_003814641.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Prevotella melaninogenica ATCC 25845]
 gi|302150472|gb|ADK96733.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Prevotella melaninogenica ATCC 25845]
          Length = 415

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 50/92 (54%), Gaps = 5/92 (5%)

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
           + +  Q+ SD  L+ ++RRHTA E    + R+RSV     IS D + GFP ET ++++  
Sbjct: 140 ISMGAQTFSDERLRFLHRRHTADEVEAAVKRLRSVNIK-NISVDLMFGFPNETLEEWKED 198

Query: 351 MD--LVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++  L   I +  A+S  Y    GTP   +L+
Sbjct: 199 IERLLALDIEHISAYSLMYEE--GTPLYRLLQ 228


>gi|15921106|ref|NP_376775.1| hypothetical protein ST0873 [Sulfolobus tokodaii str. 7]
 gi|15621891|dbj|BAB65884.1| 492aa long conserved hypothetical protein [Sulfolobus tokodaii str.
           7]
          Length = 492

 Score = 47.4 bits (111), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 69/289 (23%), Positives = 121/289 (41%), Gaps = 41/289 (14%)

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSP--IVNVVVGPQTYYRLPELLERARFGK- 147
           K  +IK   D+ VVV G      G   L + P   ++VV         PE++++   G+ 
Sbjct: 95  KIKKIKSKYDIKVVVGGA-----GAWQLEKEPPEWIDVVFIGHAEIDFPEIVKKLEEGEK 149

Query: 148 --RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
             RVV   Y      ++LS +    N  RG    + I  GC + C FC V  T    IS 
Sbjct: 150 VPRVVKARYP-----KKLSEIPPIINAARG--GEVQITRGCPRGCWFCSV--TPDTFISF 200

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL--VRL 263
            +  ++ E    +  G+ +++L+  ++  +  K L          LY+  +  G+  +  
Sbjct: 201 PIDYILKEVEVNMRAGIKDVSLITDDMMLYGAKSLREVNHDAIIRLYTELKKAGVDYINF 260

Query: 264 RYTTSHPRDMSDCLIKAHGDL------DVLMPYLHLPVQSGSDRIL-KSMNRRHTAYEYR 316
            + ++ P  +S   IK   ++        + P + L  ++GS++I  K M  +   + Y 
Sbjct: 261 AHISAAPVKLSPRTIKEMSEIAGWNEQKAVSPVVGL--ETGSEKIFNKYMKMKAFPWGYN 318

Query: 317 QIIDRIRSVRPDIAISSD--------FIVGFPGETDDDFRATMDLVDKI 357
              D I       AI +D          +G+P ETD+D   ++ LV+ I
Sbjct: 319 NWKDLIVEA---TAIMNDSYIYPCYTMTIGYPDETDEDVEQSIKLVEYI 364


>gi|303239514|ref|ZP_07326040.1| Radical SAM domain protein [Acetivibrio cellulolyticus CD2]
 gi|302592892|gb|EFL62614.1| Radical SAM domain protein [Acetivibrio cellulolyticus CD2]
          Length = 568

 Score = 47.4 bits (111), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 42/183 (22%), Positives = 80/183 (43%), Gaps = 15/183 (8%)

Query: 176 VTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW 235
           +TA+ +    C   C+FC      G    +  +Q+VDE   L      ++ L G ++   
Sbjct: 266 ITAYAS--RSCPFQCSFCSETVQWGKYRKKDANQIVDETLMLYKKHGSQLFLFGDSLLNP 323

Query: 236 RGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPV 295
             + L  E     + +Y      G +R      H  D  +      G          + V
Sbjct: 324 VIEDLADEYIRRGESIY----WDGYLR---ADKHVCDPENTFKWRRGGFYRA----RIGV 372

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
           +SGS R+L  M++R    + ++ I  +      I  ++ +++GFPGET++DF  T++L++
Sbjct: 373 ESGSQRVLNLMDKRTKIEQIKEAISSL--AYAGIKTTTYWVIGFPGETEEDFMETLNLIE 430

Query: 356 KIG 358
           ++ 
Sbjct: 431 ELA 433


>gi|295084743|emb|CBK66266.1| coproporphyrinogen III oxidase, anaerobic [Bacteroides
           xylanisolvens XB1A]
          Length = 376

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 52/172 (30%), Positives = 79/172 (45%), Gaps = 24/172 (13%)

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTT--SHPRDMSDCLIKAHGDLDVLMPY--LHLPVQSG 298
           EK  F  +  ++ E  GL   +  T  ++P D+S   ++    L    P+  L + +Q+ 
Sbjct: 66  EKEDFEQIFDTIREHYGLNHCQEITLEANPDDLSQEYLEMLSSL----PFNRLSMGIQTF 121

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA-ISSDFIVGFPGET----DDDFRATMDL 353
            D  LK + RRH A    + IDR R  + D   IS D I G PGET    ++D R  + L
Sbjct: 122 DDATLKLLRRRHNARTAIEAIDRCR--KADFQNISIDLIYGLPGETKERWENDLRQAISL 179

Query: 354 VDKIGYAQAFSFKYSPRLGTPGSNMLEQ-----VDENVKAERLLCLQKKLRE 400
              + +  A+   Y     TP  NML+Q     VDE+   E    L + L++
Sbjct: 180 --NVEHISAYHLIYEE--DTPIYNMLKQHQISEVDEDSSLEFFTLLIEHLQK 227


>gi|293368829|ref|ZP_06615433.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Bacteroides ovatus SD CMC 3f]
 gi|292636134|gb|EFF54622.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Bacteroides ovatus SD CMC 3f]
          Length = 376

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 52/172 (30%), Positives = 79/172 (45%), Gaps = 24/172 (13%)

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTT--SHPRDMSDCLIKAHGDLDVLMPY--LHLPVQSG 298
           EK  F  +  ++ E  GL   +  T  ++P D+S   ++    L    P+  L + +Q+ 
Sbjct: 66  EKEDFEQIFDTIREHYGLNHCQEITLEANPDDLSQEYLEMLSSL----PFNRLSMGIQTF 121

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA-ISSDFIVGFPGET----DDDFRATMDL 353
            D  LK + RRH A    + IDR R  + D   IS D I G PGET    ++D R  + L
Sbjct: 122 DDATLKLLRRRHNARTAIEAIDRCR--KADFQNISIDLIYGLPGETKERWENDLRQAISL 179

Query: 354 VDKIGYAQAFSFKYSPRLGTPGSNMLEQ-----VDENVKAERLLCLQKKLRE 400
              + +  A+   Y     TP  NML+Q     VDE+   E    L + L++
Sbjct: 180 --NVEHISAYHLIYEE--DTPIYNMLKQHQISEVDEDSSLEFFTLLIEHLQK 227


>gi|288802794|ref|ZP_06408231.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Prevotella melaninogenica D18]
 gi|288334611|gb|EFC73049.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Prevotella melaninogenica D18]
          Length = 422

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 50/92 (54%), Gaps = 5/92 (5%)

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
           + +  Q+ SD  L+ ++RRHTA E    + R+RSV     IS D + GFP ET ++++  
Sbjct: 140 ISMGAQTFSDERLRFLHRRHTADEVETAVKRLRSVNIK-NISVDLMFGFPNETLEEWKED 198

Query: 351 MD--LVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++  L   I +  A+S  Y    GTP   +L+
Sbjct: 199 IERLLALDIEHISAYSLMYEE--GTPLYRLLQ 228


>gi|192292434|ref|YP_001993039.1| radical SAM domain protein [Rhodopseudomonas palustris TIE-1]
 gi|192286183|gb|ACF02564.1| Radical SAM domain protein [Rhodopseudomonas palustris TIE-1]
          Length = 633

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 62/237 (26%), Positives = 106/237 (44%), Gaps = 32/237 (13%)

Query: 168 GGYNRKRGV-TAFLTI--QEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLI-DNGV 222
           G ++R  G    F T+    GC   CTFC V    G  +  R++  V+DE + L+ D+G+
Sbjct: 245 GAFSRYVGADKPFATVLAARGCRARCTFCTVRNFNGFGLRQRTVQDVIDEVKHLVTDHGI 304

Query: 223 CEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE-IKGLVRLRYTTSHPRDMSDCLIKAH 281
             I  L  ++   R + L         L   L+E + GL    +T S      + LI   
Sbjct: 305 RSIDWLDDDLLWDRDRALA--------LFRGLAEQVPGL---EWTAS------NGLIAVA 347

Query: 282 GDLDVL-------MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSD 334
            D +++       +    + V+SG+D +LK++ +  T  + R     + +  PD+ +S++
Sbjct: 348 IDDEMMQAMVASGLRAFKIGVESGNDAMLKTIKKPTTKPKLRARAG-LFAKYPDVFVSTN 406

Query: 335 FIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV-DENVKAER 390
           FI+GFP ET      + DL  ++    A  +   P  GT   +  + + D   K ER
Sbjct: 407 FIIGFPDETFGQMMDSYDLAVELASDWASFYICQPLKGTEMFSAFQSLGDARTKEER 463


>gi|119719392|ref|YP_919887.1| radical SAM domain-containing protein [Thermofilum pendens Hrk 5]
 gi|119524512|gb|ABL77884.1| Radical SAM domain protein [Thermofilum pendens Hrk 5]
          Length = 567

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 60/243 (24%), Positives = 109/243 (44%), Gaps = 41/243 (16%)

Query: 149 VVDTDYSVEDKFER------LSIVDGGYNRKRGVTAFLTIQEGCDKF----CTFCVVPYT 198
            V  DYS+ D+F        L   + GYN    +TA +   + C ++    C+FC+ P  
Sbjct: 160 AVSKDYSLVDRFAVRGARIVLQHPNLGYN----LTAEIETYKSCPRWVTGGCSFCIEPRL 215

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQ-NVNAWRGKGLDGEKCTFSDLLYSLSEI 257
            G  + R    + +E R L + GV    L  Q +  A++ KG++  +    D   S+ E+
Sbjct: 216 -GRVVFREAKSIGEEVRALYELGVRAFRLGRQADFLAYKAKGVNEVEFPEPDP-SSIEEL 273

Query: 258 KGLVRLRYTTS---HPRDMSDCLI-----KAHGDLDVLMPYLHLP-------VQSGSDRI 302
              VRL   ++   H  +++   I     KA   L  ++ Y H P       ++S    +
Sbjct: 274 MRTVRLAAPSAETIHIDNVNPATIYIHKEKAREALKSIVKY-HTPGDVAAFGLESADPVV 332

Query: 303 LKSMNRRHTA---YEYRQIIDRIRSVR-----PDIAISSDFIVGFPGETDDDFRATMDLV 354
           +K  N  + A    E  +I++ + + R     P++    +F++G PGET   +RA  + +
Sbjct: 333 VKQNNLGNDAEGVLEAIKIVNEVGARRGWNGSPELLPGVNFVLGLPGETAKTYRANKEFL 392

Query: 355 DKI 357
           ++I
Sbjct: 393 ERI 395


>gi|213023346|ref|ZP_03337793.1| hypothetical protein Salmonelentericaenterica_12575 [Salmonella
           enterica subsp. enterica serovar Typhi str. 404ty]
          Length = 103

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 10/88 (11%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+  FV S GC  N+ DS R+     ++GY+ V   DDAD++++NTC   + A ++    
Sbjct: 8   PKIGFV-SLGCPKNLVDSERILTELRTEGYDVVPHYDDADMVIVNTCGFIDSAVQESLEA 66

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQ 111
           +G   N       E G   V+V GC+ +
Sbjct: 67  IGEALN-------ENGK--VIVTGCLGK 85


>gi|316933167|ref|YP_004108149.1| Radical SAM domain-containing protein [Rhodopseudomonas palustris
           DX-1]
 gi|315600881|gb|ADU43416.1| Radical SAM domain protein [Rhodopseudomonas palustris DX-1]
          Length = 632

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 59/243 (24%), Positives = 107/243 (44%), Gaps = 39/243 (16%)

Query: 170 YNRKRGVTAF------------LTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARK 216
           Y+R  G+ AF            +    GC   CTFC V    G  +  R++  V+DE + 
Sbjct: 236 YHRYGGLGAFSRYVGEDKPYATVLATRGCRARCTFCTVRNFNGFGLRQRTVQDVIDEVKH 295

Query: 217 LI-DNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR----LRYTTSH-- 269
           L+  +G+  I  L  ++   R +              +L+  KGL      L +T S+  
Sbjct: 296 LVTHHGIRYIDWLDDDLLWDRER--------------TLALFKGLAEQVPGLEWTASNGV 341

Query: 270 -PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
               + D +++A   +   +    + V+SG+D +LK++ +  T  + R+   R+ +  P+
Sbjct: 342 IAVAIDDEIMQAM--VASGLRAFKIGVESGNDAMLKTIKKPTTKPKLRERA-RLFAKYPE 398

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV-DENVK 387
           + +S++FI+GFP ET      + DL  ++    A  +   P  GT   +  + + D   K
Sbjct: 399 VFVSTNFIIGFPDETFGQMMDSYDLAVELASDWASFYICQPLKGTEMFSAFQSLGDARTK 458

Query: 388 AER 390
            ER
Sbjct: 459 EER 461


>gi|126466025|ref|YP_001041134.1| radical SAM domain-containing protein [Staphylothermus marinus F1]
 gi|126014848|gb|ABN70226.1| Radical SAM domain protein [Staphylothermus marinus F1]
          Length = 535

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 71/308 (23%), Positives = 134/308 (43%), Gaps = 43/308 (13%)

Query: 190 CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSD 249
           C FC VPY  G   SRS+  +V+E  +L+ +G   I L   +   + G+ L  +    +D
Sbjct: 237 CGFCSVPYMFGPARSRSIDSIVEEINELVGHGAKRIVLSAPDFLDY-GRDLLVKPKPLTD 295

Query: 250 -------------LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL-DVLMPYL---- 291
                        LL SL EI   VR +       ++  CL+    DL  +L  YL    
Sbjct: 296 PCHPKPNIEMIEALLSSLFEIDR-VRNKSVRIFIENIKACLVTE--DLAKILGKYLSGTT 352

Query: 292 -HLPVQSGSDR-----ILKSMNRRHTAYEYRQI-IDRIRSVRPDIAISSDFIVGFPGETD 344
            H+ +++G  +     + K ++  H    Y+ + + +   +RP + +    + G P   +
Sbjct: 353 IHIGLETGDSKYNSLVLGKPISVEHV---YKAVKLLKANGLRPYVYL----MYGLPLANE 405

Query: 345 DDFRATMDLVDK---IGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQ 401
             +R T+ ++ K   +G  +   +K+ P  GT   N+   + +  +   L  ++KK+ + 
Sbjct: 406 KVYRKTLRVISKLSSLGVEKITLYKFVPLPGTAFQNLKPDIKQYSRIISL--IKKKVEKY 463

Query: 402 QVSFNDACVGQIIEV-LIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKI 460
            +    + +G+ I V L+  +GK  G  +   P +    L S   +  + + V I DV  
Sbjct: 464 NLLTKTSFIGRKIHVLLLHSNGKYYGYPINHGPTVFVKGLTSPGFSGCEAL-VEIYDVAP 522

Query: 461 STLYGELV 468
             L+G+ +
Sbjct: 523 RFLWGKFI 530


>gi|271498887|ref|YP_003331912.1| hypothetical protein Dd586_0310 [Dickeya dadantii Ech586]
 gi|270342442|gb|ACZ75207.1| conserved hypothetical protein [Dickeya dadantii Ech586]
          Length = 314

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 2/69 (2%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +L L +QS  DR L+ +NR H    Y+Q + R R+    + + S  IVG PGE D+   +
Sbjct: 146 WLELGLQSAHDRTLRRINRGHDFACYQQTVQRARA--RGLKVCSHLIVGLPGERDEHCLS 203

Query: 350 TMDLVDKIG 358
           T+  V + G
Sbjct: 204 TLQRVVEAG 212


>gi|256396170|ref|YP_003117734.1| coproporphyrinogen III oxidase [Catenulispora acidiphila DSM 44928]
 gi|256362396|gb|ACU75893.1| oxygen-independent coproporphyrinogen III oxidase [Catenulispora
           acidiphila DSM 44928]
          Length = 408

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 56/118 (47%), Gaps = 10/118 (8%)

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           +QS  + +L+ ++RRHT       +   R    +  ++ D I G PGE+DDD+RA++D  
Sbjct: 155 MQSAREHVLQILDRRHTPGRPEACVREAREAGFE-HVNLDLIYGTPGESDDDWRASLDAA 213

Query: 355 DKIGYAQAFSFKYS------PRLGTP-GSNMLEQVDENVKAERLLCLQKKLREQQVSF 405
             IG A      YS       RL        L  +D++V A+R L   +KL     S+
Sbjct: 214 --IGAAPDHVSAYSLIVEDGTRLAARVKRGELPMIDDDVHADRYLIADEKLAAAGYSW 269


>gi|219851304|ref|YP_002465736.1| Radical SAM domain protein [Methanosphaerula palustris E1-9c]
 gi|219545563|gb|ACL16013.1| Radical SAM domain protein [Methanosphaerula palustris E1-9c]
          Length = 489

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 71/278 (25%), Positives = 117/278 (42%), Gaps = 31/278 (11%)

Query: 173 KRGVTAFLTIQEGCDKFCTFCVVPYTRG-IEISRSLSQVVDEARKLIDN-GVCEITLLGQ 230
           K     ++    GC     +C   +  G +  +RS   VVDE  +L+    V  I  L  
Sbjct: 196 KDATIGYMITSRGCTFASNYCSSSHLMGGMFRARSPKNVVDEVEELVSTYHVDTIEFLDD 255

Query: 231 NVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY 290
           N    R + +D      S  L    +I  +   R    + RD+   L KA       +  
Sbjct: 256 NFMLNRSRAIDIAHEIRSRGL----DISFVASSRVNAVN-RDLLMELKKAG------LST 304

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP-DIAISSDFIVGFPGETDDDFRA 349
           ++  V+SGS R LK MN+R T        D +R  +   I++ + FI+G+PGET +D  A
Sbjct: 305 IYYGVESGSLRTLKLMNKRIT---LSMAEDAVRIAKDCGISVLTSFIIGYPGETYEDMNA 361

Query: 350 TMDLVDKI--GYAQAFSFKYSPRLGTP------GSNMLEQVDENVKAERLLCLQKKLREQ 401
           T+    ++   YAQ F+   +P  GTP       +N+L   D     +R   L+  +R +
Sbjct: 362 TIRFAIRLDPDYAQ-FTI-LTPYPGTPIFQELKKNNLLATED----WDRYTVLEPIIRYE 415

Query: 402 QVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV 439
                   + + ++    +     G L  RS  L++V+
Sbjct: 416 AYGLTSRKISRKLKEAYLRFYLRPGYLFRRSGLLKTVL 453


>gi|296933177|gb|ADH93700.1| NocB [Amycolatopsis fastidiosa]
          Length = 391

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 54/114 (47%), Gaps = 11/114 (9%)

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           VQS  D  L+ + RRHTA E  +I+   R    D  +S D + GFP +  D+ RAT++  
Sbjct: 129 VQSFDDARLRRLGRRHTAGEADRIVHHAREAGFD-EVSIDIMSGFPDQELDELRATVEKA 187

Query: 355 DKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDA 408
             +       + + P   TPG+ M  ++    K       +  LR+QQ  F +A
Sbjct: 188 VSLPLTHLSLYSFRP---TPGTFMRRKLAGTEK-------RAYLRKQQALFTEA 231


>gi|332686760|ref|YP_004456534.1| putative coproporphyrinogen III oxidase [Melissococcus plutonius
           ATCC 35311]
 gi|332370769|dbj|BAK21725.1| putative coproporphyrinogen III oxidase of BSHemN-type,
           oxygen-independent, in heatshock gene cluster
           [Melissococcus plutonius ATCC 35311]
          Length = 384

 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 45/177 (25%), Positives = 77/177 (43%), Gaps = 25/177 (14%)

Query: 186 CDKFCTFCVVP--YTRGIEISRSLSQVVDEARKLIDNGVCEITLL---GQNVNAWRGKGL 240
           C+  C +C       +   + R L  ++ E   +  N  CE+  L   G   +A   K L
Sbjct: 19  CEHICYYCDFNKVLIKEQPVDRYLESLLKEIELVTGNVSCELETLYIGGGTPSALSSKQL 78

Query: 241 DG------EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP 294
           D       ++ TFS+ +    E           ++P D++   I+   +  V    L + 
Sbjct: 79  DYLLSGIIKQFTFSNTIEFTVE-----------ANPGDLTPEKIQIMKNYGV--NRLSMG 125

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351
           VQS  ++ILK + R+HT  E  Q I R+     +  IS D I   PG+T ++F+ ++
Sbjct: 126 VQSFDNQILKKIGRKHTVKEIYQAIQRLEKANFN-NISIDLIYALPGQTLENFKESL 181


>gi|298483619|ref|ZP_07001794.1| oxygen-independent coproporphyrinogen III oxidase [Bacteroides sp.
           D22]
 gi|298270189|gb|EFI11775.1| oxygen-independent coproporphyrinogen III oxidase [Bacteroides sp.
           D22]
          Length = 376

 Score = 46.6 bits (109), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 51/171 (29%), Positives = 77/171 (45%), Gaps = 22/171 (12%)

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTT--SHPRDMSDCLIKAHGDLDVLMPY--LHLPVQSG 298
           EK  F  +  ++ E  GL   +  T  ++P D+S   ++    L    P+  L + +Q+ 
Sbjct: 66  EKEDFEQIFDTIREHYGLNHCQEITLEANPDDLSQEYLEMLSSL----PFNRLSMGIQTF 121

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGET----DDDFRATMDLV 354
            D  LK + RRH A    + IDR R       IS D I G PGET    ++D R  + L 
Sbjct: 122 DDATLKLLRRRHNARTAIEAIDRCRKAGFQ-NISIDLIYGLPGETKERWENDLRQAISL- 179

Query: 355 DKIGYAQAFSFKYSPRLGTPGSNMLEQ-----VDENVKAERLLCLQKKLRE 400
             + +  A+   Y     TP  NML+Q     VDE+   E    L + L++
Sbjct: 180 -NVEHISAYHLIYEE--DTPIYNMLKQHQISEVDEDSSLEFFTLLIEHLQK 227


>gi|268589773|ref|ZP_06123994.1| radical SAM protein [Providencia rettgeri DSM 1131]
 gi|291314928|gb|EFE55381.1| radical SAM protein [Providencia rettgeri DSM 1131]
          Length = 300

 Score = 46.2 bits (108), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 2/69 (2%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +L L +QS  D+ L  +NR H  Y YRQ   + RS+   + + +  I G PGE       
Sbjct: 141 WLELGLQSAHDKTLHRINRGHGFYAYRQTTQKARSL--GLKVCTHLICGLPGENGQMNME 198

Query: 350 TMDLVDKIG 358
           T+D V + G
Sbjct: 199 TLDKVLECG 207


>gi|27364014|ref|NP_759542.1| hypothetical protein VV1_0552 [Vibrio vulnificus CMCP6]
 gi|27360131|gb|AAO09069.1| hypothetical protein VV1_0552 [Vibrio vulnificus CMCP6]
          Length = 318

 Score = 46.2 bits (108), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 40/69 (57%), Gaps = 2/69 (2%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +L L +Q+ S+  LK +NR H    Y +I  R R++   I + +  IVG P E+ DD  A
Sbjct: 141 WLELGLQTASNSTLKRINRGHDFECYAEITQRARAL--GIKVCTHLIVGLPKESRDDNFA 198

Query: 350 TMDLVDKIG 358
           T++ V ++G
Sbjct: 199 TLEKVIEVG 207


>gi|78224132|ref|YP_385879.1| hypothetical protein Gmet_2936 [Geobacter metallireducens GS-15]
 gi|78195387|gb|ABB33154.1| conserved hypothetical protein [Geobacter metallireducens GS-15]
          Length = 319

 Score = 46.2 bits (108), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 2/64 (3%)

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
           + L +QS  D+IL+ + R HT  EY + + RI      I + +  I GFPGET D F  T
Sbjct: 150 IELGLQSMDDKILQQIGRGHTLTEYLEAVARIEGR--GIELCTHLIYGFPGETRDGFLRT 207

Query: 351 MDLV 354
            D++
Sbjct: 208 ADMM 211


>gi|312837890|gb|ADR01089.1| NocN [Nocardia sp. ATCC 202099]
          Length = 420

 Score = 46.2 bits (108), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 54/114 (47%), Gaps = 11/114 (9%)

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           VQS  D  L+ + RRHTA E  +I+   R    D  +S D + GFP +  D+ RAT++  
Sbjct: 158 VQSFDDARLRRLGRRHTAGEADRIVHHAREAGFD-EVSIDIMSGFPDQELDELRATVEKA 216

Query: 355 DKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDA 408
             +       + + P   TPG+ M  ++    K       +  LR+QQ  F +A
Sbjct: 217 VSLPLTHLSLYSFRP---TPGTFMRRKLAGTEK-------RAYLRKQQALFTEA 260


>gi|94312339|ref|YP_585549.1| radical SAM family protein [Cupriavidus metallidurans CH34]
 gi|93356191|gb|ABF10280.1| Radical SAM [Cupriavidus metallidurans CH34]
          Length = 473

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 55/209 (26%), Positives = 90/209 (43%), Gaps = 31/209 (14%)

Query: 185 GCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK 244
           GC   CTFC+ P T G    R+ S     A+ +ID    E+  + +N+   R    D + 
Sbjct: 205 GCRSRCTFCLWPQTVGGHRYRTRS-----AQSVID----EVKWIKENMPEVREIMFDDD- 254

Query: 245 CTFSDLLYSLSEI-KGLVRLRYTTSHPRDMSDCLIKAHGDLDVL-------MPYLHLPVQ 296
            TF+D    + EI +GL  +    S       C  KA+   + L       +  L +  +
Sbjct: 255 -TFTDFKPRVEEIARGLGEIGLPWS-------CNAKANVPYNTLKIMKENGLRLLLVGYE 306

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
           SG D+IL ++ +       R+  +  R +   I I   FI+G PGET D    T++   +
Sbjct: 307 SGDDQILLNIKKGLRTDIARRFTEDCRKL--GIQIHGTFILGLPGETRDTIEKTIEYAKE 364

Query: 357 IGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
           I      + + S     PG+ + +Q  +N
Sbjct: 365 I---NPHTIQVSLAAPYPGTTLYKQAVDN 390


>gi|222054682|ref|YP_002537044.1| hypothetical protein Geob_1585 [Geobacter sp. FRC-32]
 gi|221563971|gb|ACM19943.1| conserved hypothetical protein [Geobacter sp. FRC-32]
          Length = 319

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 36/67 (53%), Gaps = 2/67 (2%)

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
           L L +QS  D IL  +NR HT  +Y Q ++R+     DI   +  I GFPGE+  DF  T
Sbjct: 150 LELGLQSMDDSILTQINRGHTLADYLQAVERVSGRGMDIC--THLIHGFPGESSADFIRT 207

Query: 351 MDLVDKI 357
             L+  +
Sbjct: 208 AQLISSL 214


>gi|168702591|ref|ZP_02734868.1| probable MiaB protein-putative tRNA-thiotransferase [Gemmata
           obscuriglobus UQM 2246]
          Length = 44

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 21/44 (47%), Positives = 32/44 (72%)

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
           +++SSDFIVGF G+T++ F+ +M+LV +     +F FKYS R G
Sbjct: 1   MSVSSDFIVGFCGDTEESFQKSMELVREARVKNSFIFKYSERGG 44


>gi|261417376|ref|YP_003251059.1| hypothetical protein Fisuc_2997 [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261373832|gb|ACX76577.1| conserved hypothetical protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|302328091|gb|ADL27292.1| radical SAM protein, TIGR01212 family [Fibrobacter succinogenes
           subsp. succinogenes S85]
          Length = 295

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 21/66 (31%), Positives = 37/66 (56%), Gaps = 2/66 (3%)

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           +Q+ +D  L  +NRRHT  E+   + R ++    + +++  IVG PGE  +DF+ T  +V
Sbjct: 149 LQTANDLTLAGINRRHTLAEFEDAVKRCQAA--GLTVTTHVIVGLPGEKMEDFKHTAQVV 206

Query: 355 DKIGYA 360
             +  A
Sbjct: 207 HDLKLA 212


>gi|307129092|ref|YP_003881108.1| putative Fe-S oxidoreductase [Dickeya dadantii 3937]
 gi|306526621|gb|ADM96551.1| predicted Fe-S oxidoreductase [Dickeya dadantii 3937]
          Length = 309

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 2/69 (2%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +L L +QS  DR L+ +NR H    YRQ   R R+    + + S  IVG PGE+++   +
Sbjct: 141 WLELGLQSAHDRTLRRINRGHDFACYRQTAQRARAR--GLKVCSHLIVGLPGESEEHCLS 198

Query: 350 TMDLVDKIG 358
           T+  V + G
Sbjct: 199 TLRQVVEAG 207


>gi|167837301|ref|ZP_02464184.1| radical SAM domain protein [Burkholderia thailandensis MSMB43]
          Length = 481

 Score = 46.2 bits (108), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 56/211 (26%), Positives = 91/211 (43%), Gaps = 35/211 (16%)

Query: 185 GCDKFCTFCVVPYTRGIEI--SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG 242
           GC   CTFC+ P T G     +RS+  V+ E + + DN + E+            K +  
Sbjct: 213 GCRSKCTFCLWPQTVGGHRYRTRSVESVLAEVKWIRDN-MPEV------------KEIMF 259

Query: 243 EKCTFSDLLYSLSEI-KGLVRLRYTTSHPRDMSDCLIKAHGDLDVL-------MPYLHLP 294
           +  TF+D    + EI +GL +L  T S       C  KA+     L       +  L + 
Sbjct: 260 DDDTFTDFKPRVEEIARGLGKLGVTWS-------CNAKANVPYSTLKIMKENGLRLLLVG 312

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
            +SG D+IL ++ +       R+  +  R +   I I   FI+G PGET +  + T++  
Sbjct: 313 YESGDDQILLNIKKGLRTDIARRFNEDCRKL--GIKIHGTFILGLPGETKETIKKTIEYA 370

Query: 355 DKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            +I      + + S     PG+ +  Q  EN
Sbjct: 371 KEI---NPHTIQVSLAAPYPGTRLYNQAIEN 398


>gi|218887904|ref|YP_002437225.1| radical SAM protein [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218758858|gb|ACL09757.1| conserved hypothetical radical SAM protein [Desulfovibrio vulgaris
           str. 'Miyazaki F']
          Length = 372

 Score = 46.2 bits (108), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 6/88 (6%)

Query: 274 SDCLIKAHGDLDVLMP----YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329
            DC+     DL   +P    +L L +QS  D  L  +NR H A   ++ + R  + R  +
Sbjct: 124 PDCVDNERLDLVAALPLPEVWLELGLQSAHDATLARINRGHDAAASKRAV-REAAAR-GL 181

Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKI 357
            + +  I G PGE+ DDF A++D V+++
Sbjct: 182 RVCAHLIAGLPGESGDDFLASVDWVNRL 209


>gi|222054759|ref|YP_002537121.1| radical SAM protein [Geobacter sp. FRC-32]
 gi|221564048|gb|ACM20020.1| Radical SAM domain protein [Geobacter sp. FRC-32]
          Length = 450

 Score = 46.2 bits (108), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 61/253 (24%), Positives = 103/253 (40%), Gaps = 52/253 (20%)

Query: 174 RGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS-RSLSQVVDEARKLIDNGVCEITLLGQNV 232
           RG++  + +  GC   CTFC V  T G     +S  +VVDE   L ++   E        
Sbjct: 210 RGIS--MIVSRGCPFQCTFCAVHQTMGRNWRIKSPQRVVDELVALKEHHQLE-------- 259

Query: 233 NAWRGKGLDGEKCTFSDLLYSLSE----------IKGLVRLRYTTSHPRDMSD----CLI 278
             W           F D +++L+           I+  V + +      D+ D     L+
Sbjct: 260 GVW-----------FKDSIFNLNREWIKEFCRLMIEQKVEIAWQALTRIDLIDEEELQLM 308

Query: 279 KAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVG 338
           K  G     +  L L +++GS + L  + +  T     +I +R+R  +  + +   F++G
Sbjct: 309 KRAG-----LTQLDLGIETGSPKNLVRLKKGITV---EKINERVRLAKQYVKVFGFFMIG 360

Query: 339 FPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKL 398
            PGE + D + T +L   +   +     YSP    PGS + E++    K E       +L
Sbjct: 361 IPGEDETDVQQTFNLAKDLDLDRWTWSIYSP---LPGSTLYEELIAEGKIEPY-----RL 412

Query: 399 REQQVSFNDACVG 411
              QV F +A  G
Sbjct: 413 DYHQVHFTEAYAG 425


>gi|225389118|ref|ZP_03758842.1| hypothetical protein CLOSTASPAR_02864 [Clostridium asparagiforme
           DSM 15981]
 gi|225044817|gb|EEG55063.1| hypothetical protein CLOSTASPAR_02864 [Clostridium asparagiforme
           DSM 15981]
          Length = 119

 Score = 46.2 bits (108), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 52/110 (47%), Gaps = 1/110 (0%)

Query: 351 MDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACV 410
           MD+V ++ +  AF+F YS R GTP ++M  QV E+V  ER   L  +++          V
Sbjct: 1   MDVVRRVEFDSAFTFIYSKRTGTPAASMENQVPEDVVRERFDRLLNEVQSISAKICGRDV 60

Query: 411 GQIIEVLIEKHGKE-KGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVK 459
             + +VL+E+      G + GR      V        IG ++ V + + K
Sbjct: 61  HTVQQVLVEEENDHTPGYMTGRLSNNTVVHFPGDPSMIGTLMDVYLEESK 110


>gi|84393235|ref|ZP_00991997.1| hypothetical protein V12B01_08547 [Vibrio splendidus 12B01]
 gi|84376141|gb|EAP93027.1| hypothetical protein V12B01_08547 [Vibrio splendidus 12B01]
          Length = 317

 Score = 46.2 bits (108), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 2/69 (2%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +L L +Q+ +D+ LK +NR H    Y  I  R R++   I I +  IVG P ET  D   
Sbjct: 143 WLELGLQTANDKTLKRINRGHDFAVYETITRRARAL--GIKICTHLIVGLPKETKADNLE 200

Query: 350 TMDLVDKIG 358
           T+D V  +G
Sbjct: 201 TLDKVLAVG 209


>gi|116696108|ref|YP_841684.1| hypothetical protein H16_B2172 [Ralstonia eutropha H16]
 gi|113530607|emb|CAJ96954.1| conserved hypothetical protein [Ralstonia eutropha H16]
          Length = 474

 Score = 45.8 bits (107), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 53/209 (25%), Positives = 88/209 (42%), Gaps = 31/209 (14%)

Query: 185 GCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK 244
           GC   CTFC+ P T G    R+ S          ++ + E+  + +N+   +    D + 
Sbjct: 206 GCRSRCTFCLWPQTVGGHRYRTRSA---------ESVIAEVKWIKENMPEVKEIMFDDD- 255

Query: 245 CTFSDLLYSLSEI-KGLVRLRYTTSHPRDMSDCLIKAHGDLDVL-------MPYLHLPVQ 296
            TF+D    + EI +GL +L  T S       C  KA+     L       +  L +  +
Sbjct: 256 -TFTDFKPRVEEIARGLGQLGVTWS-------CNAKANVPYSTLKIMKENGLRLLLVGYE 307

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
           SG D+IL ++ +       R+  +  R +   I I   FI+G PGET +    T++   +
Sbjct: 308 SGDDQILLNIKKGLRTDIARRFTEDCRKL--GIQIHGTFILGLPGETRETIEKTIEYAKE 365

Query: 357 IGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
           I      + + S     PG+ +  Q  EN
Sbjct: 366 I---NPHTIQVSLAAPYPGTTLYRQAVEN 391


>gi|39995977|ref|NP_951928.1| radical SAM domain/B12 binding domain-containing protein [Geobacter
           sulfurreducens PCA]
 gi|39982742|gb|AAR34201.1| radical SAM domain protein/B12 binding domain protein [Geobacter
           sulfurreducens PCA]
 gi|298504993|gb|ADI83716.1| cobalamin-binding radical SAM domain iron-sulfur cluster-binding
           oxidoreductase with TPR domain [Geobacter sulfurreducens
           KN400]
          Length = 554

 Score = 45.8 bits (107), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 48/188 (25%), Positives = 82/188 (43%), Gaps = 29/188 (15%)

Query: 179 FLTIQEGCDKFCTFCVVPYTRGIEIS-RSLSQVVDEARKLIDN-GVCEITLLGQNVNAWR 236
           F+    GC   C FC  P   G  +  RS   +VDE R + D  G+   +L      A  
Sbjct: 189 FVITSRGCPASCRFCSSPRFWGTSLRLRSPRAMVDEIRYIRDRFGLLSFSLRDDTFTARA 248

Query: 237 GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLM-------P 289
            + ++  +   ++ L+ L   +  V             +C+     D ++L+        
Sbjct: 249 DRVIEFCRLLTAEGLHILWSCQSRV-------------NCV-----DEEMLLWMRRAGCE 290

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           Y+   V+SGS+RIL  + +R T  + ++     R    D++I    I G PGE ++D RA
Sbjct: 291 YVQYGVESGSERILARLGKRITPDQVQRAAAATRRAGMDLSIY--LIAGVPGEDEEDLRA 348

Query: 350 TMDLVDKI 357
           T+ L++ I
Sbjct: 349 TLRLIEDI 356


>gi|261253842|ref|ZP_05946415.1| hypothetical protein VIA_003869 [Vibrio orientalis CIP 102891]
 gi|260937233|gb|EEX93222.1| hypothetical protein VIA_003869 [Vibrio orientalis CIP 102891]
          Length = 314

 Score = 45.8 bits (107), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 40/69 (57%), Gaps = 2/69 (2%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +L L +Q+ +++ LK +NR H    Y +I  R R++   I + +  IVG P ET +D  A
Sbjct: 141 WLELGLQTANNQTLKRINRGHDFECYAEITKRARAL--GIKVCTHLIVGLPKETREDNIA 198

Query: 350 TMDLVDKIG 358
           TM+ V  +G
Sbjct: 199 TMEQVLAVG 207


>gi|325852044|ref|ZP_08171127.1| putative coproporphyrinogen dehydrogenase [Prevotella denticola
           CRIS 18C-A]
 gi|325484600|gb|EGC87516.1| putative coproporphyrinogen dehydrogenase [Prevotella denticola
           CRIS 18C-A]
          Length = 427

 Score = 45.8 bits (107), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 49/88 (55%), Gaps = 5/88 (5%)

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           +Q+ SD  L+ ++RRHTA E    + R+R       IS D + GFPGET +++ A +  V
Sbjct: 145 MQTFSDERLRFLHRRHTAAEAVSAVGRLREAGIG-NISVDLMFGFPGETLEEWEADIAHV 203

Query: 355 DKIG--YAQAFSFKYSPRLGTPGSNMLE 380
            ++G  +  A+S  Y    GTP   +L+
Sbjct: 204 LELGAEHISAYSLMYEE--GTPLYRLLQ 229


>gi|304437076|ref|ZP_07397039.1| oxygen-independent coproporphyrinogen III oxidase 2 [Selenomonas
           sp. oral taxon 149 str. 67H29BP]
 gi|304370027|gb|EFM23689.1| oxygen-independent coproporphyrinogen III oxidase 2 [Selenomonas
           sp. oral taxon 149 str. 67H29BP]
          Length = 501

 Score = 45.8 bits (107), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 37/62 (59%), Gaps = 1/62 (1%)

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
           QS  +R L+ + R HT  +  +++  IR+   D+ I+ D I+G PGET +D RATM  V 
Sbjct: 295 QSMQERTLERIGRHHTPSDIVRMVQDIRASM-DVHINMDVILGLPGETAEDVRATMAAVT 353

Query: 356 KI 357
            +
Sbjct: 354 AL 355


>gi|301166049|emb|CBW25623.1| conserved hypothetical protein [Bacteriovorax marinus SJ]
          Length = 460

 Score = 45.8 bits (107), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 41/172 (23%), Positives = 76/172 (44%), Gaps = 15/172 (8%)

Query: 185 GCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGE 243
           GC   CTFC          ++S  Q+VDE +   DN GV +  ++   +N        G 
Sbjct: 224 GCVAKCTFCSETNYWVSFRTKSARQIVDEFKYHYDNYGVNQFRIVDSLMN--------GN 275

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
                D+   + E K              ++  L+K   D      Y++  ++SGS  +L
Sbjct: 276 HRLLEDMCDIILEEKHTFYWHGFCRISNKLTPALLKKMRDAGCT--YINYGIESGSQNVL 333

Query: 304 KSMNRRHTAYEYRQIIDRIRSVR-PDIAISSDFIVGFPGETDDDFRATMDLV 354
             M +R   Y+  +I++ ++  +  +I + +  ++GFPGET  +F  T+ ++
Sbjct: 334 NLMKKR---YKLSEILETVKHTKNSNIEVHAQILIGFPGETWFNFYETLRML 382


>gi|251791348|ref|YP_003006069.1| hypothetical protein Dd1591_3790 [Dickeya zeae Ech1591]
 gi|247539969|gb|ACT08590.1| conserved hypothetical protein [Dickeya zeae Ech1591]
          Length = 314

 Score = 45.8 bits (107), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 2/69 (2%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +L L +QS  DR L+ +NR H    YRQ   R R+    + + S  IVG PGE+ +   +
Sbjct: 146 WLELGLQSAHDRTLRRINRGHDFACYRQTAQRARA--RGLKVCSHLIVGLPGESGEHCLS 203

Query: 350 TMDLVDKIG 358
           T+  V + G
Sbjct: 204 TLQQVVEAG 212


>gi|167948741|ref|ZP_02535815.1| hypothetical protein Epers_20333 [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 139

 Score = 45.8 bits (107), Expect = 0.015,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 39/73 (53%)

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
           +I R R+  P++ + S FIVGFPGET+ +F   +  + +    +   F YSP  G   + 
Sbjct: 1   MIQRWRTECPELVLRSTFIVGFPGETEAEFEELLAFLREAQLDRVGCFAYSPVAGATANQ 60

Query: 378 MLEQVDENVKAER 390
           +   + + ++ +R
Sbjct: 61  LPGALPDEIREQR 73


>gi|303239512|ref|ZP_07326038.1| Radical SAM domain protein [Acetivibrio cellulolyticus CD2]
 gi|302592890|gb|EFL62612.1| Radical SAM domain protein [Acetivibrio cellulolyticus CD2]
          Length = 570

 Score = 45.8 bits (107), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 45/79 (56%), Gaps = 6/79 (7%)

Query: 293 LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352
           L ++SGS R+L  +++R T  E R  I  + S    I  ++ +  G PGET++DF+ T+D
Sbjct: 372 LGIESGSQRVLDMIDKRITLDEIRAAITSLASA--GIKTTTYWFSGHPGETEEDFQQTLD 429

Query: 353 LV----DKIGYAQAFSFKY 367
           L+    D I  A+   F+Y
Sbjct: 430 LLEELQDYIYEAECDPFRY 448


>gi|237719986|ref|ZP_04550467.1| coproporphyrinogen III oxidase [Bacteroides sp. 2_2_4]
 gi|229450538|gb|EEO56329.1| coproporphyrinogen III oxidase [Bacteroides sp. 2_2_4]
          Length = 335

 Score = 45.8 bits (107), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 79/172 (45%), Gaps = 24/172 (13%)

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTT--SHPRDMSDCLIKAHGDLDVLMPY--LHLPVQSG 298
           EK  F  +  ++ E  GL   +  T  ++P D+S   ++    L    P+  L + +Q+ 
Sbjct: 25  EKEDFEQIFDTIREHYGLNHCQEITLEANPDDLSQEYLEMLSSL----PFNRLSMGIQTF 80

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA-ISSDFIVGFPGET----DDDFRATMDL 353
            D  LK + RRH A    + IDR R  + D   IS D I G PGET    ++D R  + L
Sbjct: 81  DDATLKLLRRRHNARTAIEAIDRCR--KADFQNISIDLIYGLPGETKERWENDLRQAISL 138

Query: 354 VDKIGYAQAFSFKYSPRLGTPGSNMLEQ-----VDENVKAERLLCLQKKLRE 400
              + +  A+   Y     TP  NML+Q     VDE+   +    L + L++
Sbjct: 139 --NVEHISAYHLIYEE--DTPIYNMLKQHQISEVDEDSSLDFFTSLIEHLQK 186


>gi|251771821|gb|EES52395.1| Radical SAM superfamily protein [Leptospirillum ferrodiazotrophum]
          Length = 447

 Score = 45.8 bits (107), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 60/246 (24%), Positives = 107/246 (43%), Gaps = 26/246 (10%)

Query: 138 ELLERARFGKRVVDTDYSVEDKFERLSIVDGGY-----NRKRGVTAFLTIQEGCDKFCTF 192
           ELL+  R GK  + + Y  E   +  S+    Y     +R R     +    GC+  C F
Sbjct: 127 ELLDDCRRGK--IKSLYKAEQPSDMKSLPRPRYELLDLSRYRIHMMPIQATRGCNYHCDF 184

Query: 193 CVVPYTR-GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLL 251
           C VP    G    R +  +V+E R+       +  ++G N   +    L G+     +L 
Sbjct: 185 CEVPVVYDGAYRMRPVEDIVEEIRQ-------QKKIMGINQFQFIDDQLTGKHAFARELF 237

Query: 252 YSLS--EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
            +L   +IK        T+H  ++ D  I A G + V     ++ ++S +   L  ++++
Sbjct: 238 KALKPLDIKWSCLWTLNTNHDEELLDLAIDA-GCIHV-----NIGMESINQANLNDIHKK 291

Query: 310 HTAYEYRQIIDRIRSV-RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
                 +  ID ++++ +  +  S + + G   +T D F AT+D ++K+    AF    S
Sbjct: 292 QN--HVKDYIDLLKAMEKRRLFYSLNLMFGLDHDTPDVFPATLDFLEKVRAPLAFFSIVS 349

Query: 369 PRLGTP 374
           PR GTP
Sbjct: 350 PREGTP 355


>gi|327312397|ref|YP_004327834.1| putative coproporphyrinogen dehydrogenase [Prevotella denticola
           F0289]
 gi|326946389|gb|AEA22274.1| putative coproporphyrinogen dehydrogenase [Prevotella denticola
           F0289]
          Length = 434

 Score = 45.8 bits (107), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 49/88 (55%), Gaps = 5/88 (5%)

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           +Q+ SD  L+ ++RRHTA E    + R+R       IS D + GFPGET +++ A +  V
Sbjct: 145 MQTFSDERLRFLHRRHTAAEAVSAVGRLREAGIG-NISVDLMFGFPGETLEEWEADIAHV 203

Query: 355 DKIG--YAQAFSFKYSPRLGTPGSNMLE 380
            ++G  +  A+S  Y    GTP   +L+
Sbjct: 204 LELGAEHISAYSLMYEE--GTPLYRLLQ 229


>gi|313672559|ref|YP_004050670.1| radical sam domain protein [Calditerrivibrio nitroreducens DSM
           19672]
 gi|312939315|gb|ADR18507.1| Radical SAM domain protein [Calditerrivibrio nitroreducens DSM
           19672]
          Length = 387

 Score = 45.8 bits (107), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 56/273 (20%), Positives = 117/273 (42%), Gaps = 24/273 (8%)

Query: 94  RIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTD 153
           ++K+  ++ +   G    A  EE+ +    V    G      + E  E    GK++    
Sbjct: 68  KLKQKKNIKIACGGPHPSARSEEMTKYFDKVCNGEGEIVLKEIVEDFESGIDGKKIYKGT 127

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP-YTRGIEISRSLSQVVD 212
             V+     L+  D  Y +K+ +   + I  GC   C +C  P   +G    +S+ +++D
Sbjct: 128 KKVD-----LNHFDA-YPKKKNLFGAIEIMRGCTFSCKYCQTPQLYKGKLRYKSIDRILD 181

Query: 213 EARKLIDNGVCEITLLGQN-VNAWRGKGLDG---EKCTFSDLLYSLSEIKGLVRLRYTTS 268
           +    I +   ++  +  +  + +   G++    EK    D L++L   KG +   +  S
Sbjct: 182 DVSFGISHNKTDLRFIAPDSASYFYDNGINILMIEKLL--DKLHNLLYNKGRI---FYGS 236

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLH-----LPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
            P +++   +     + ++  Y H     + +QS S ++LK MNR     +  + I+   
Sbjct: 237 FPSEINPYFVNEEF-VKLIKHYCHNRRVVIGLQSASRKLLKKMNRPENIEKVEEAINLF- 294

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
            ++    +  DFI G P ET +  + T++ ++K
Sbjct: 295 -LKYKFTVDVDFIFGLPFETSETLKETIEWIEK 326


>gi|206601887|gb|EDZ38369.1| Putative radical SAM superfamily transporter [Leptospirillum sp.
           Group II '5-way CG']
          Length = 445

 Score = 45.8 bits (107), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 79/342 (23%), Positives = 140/342 (40%), Gaps = 42/342 (12%)

Query: 54  ERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAE 113
           E +    D DL+ + T      +A++ Y    R R  K         + VV+ G  A   
Sbjct: 56  EEIPWNGDFDLVAVTTT---TGSAQRAYQIARRFRERK---------VPVVMGGFHATLH 103

Query: 114 GEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGY--- 170
             EIL  +   +VVVG +      ELL+  R GK  + + Y  E   +  S+    Y   
Sbjct: 104 PAEILTHAD--SVVVG-EAENVWGELLDDVRNGK--LRSIYKAEQPCDMKSLPRPRYELL 158

Query: 171 NRKRGVTAFLTIQ--EGCDKFCTFCVVPYT-RGIEISRSLSQVVDEARKLIDNGVCEITL 227
           + KR     + IQ   GC+  C FC VP    G    R +  +V E  +       +  +
Sbjct: 159 DWKRYRVHLMPIQATRGCNYHCDFCEVPVVYNGAYRMRPIEDIVQEIEE-------QKRI 211

Query: 228 LGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT--TSHPRDMSDCLIKAHGDLD 285
            G N   +    L G+     +L  +L  +       +T  T+H  ++ D  I+A     
Sbjct: 212 TGNNQFQFIDDQLTGKHTFARELFKALRPLGITWSCLWTLNTNHDEELLDLAIQAGCQ-- 269

Query: 286 VLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDD 345
               ++++ ++S +   L  ++++    +    + R    R  +  S + + G   +T D
Sbjct: 270 ----HVNIGMESINQDNLNEIHKKQNHVKDYMTLLRAMEKR-GLLYSLNLMFGLDHDTPD 324

Query: 346 DFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
            F AT   ++++    AF    SPR GTP   + E++D+ ++
Sbjct: 325 VFEATYRFLEEVRAPMAFFSIVSPREGTP---LRERLDKELR 363


>gi|282878929|ref|ZP_06287693.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Prevotella buccalis ATCC 35310]
 gi|281298928|gb|EFA91333.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Prevotella buccalis ATCC 35310]
          Length = 386

 Score = 45.8 bits (107), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 49/87 (56%), Gaps = 5/87 (5%)

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD-- 352
           VQS S+  LK ++RRH A +   ++ ++RS+  D  IS D + GFP +T D+++  +   
Sbjct: 133 VQSFSNERLKFLHRRHHAQDISPVVQQLRSIGID-NISVDLMFGFPNQTLDEWKLDIQKA 191

Query: 353 LVDKIGYAQAFSFKYSPRLGTPGSNML 379
           L  ++ +  A+S  Y    GTP   +L
Sbjct: 192 LALRVEHISAYSLMYEE--GTPLYQLL 216


>gi|15894561|ref|NP_347910.1| coproporphyrinogen III oxidase [Clostridium acetobutylicum ATCC
           824]
 gi|15024207|gb|AAK79250.1|AE007640_5 Coproporphyrinogen III oxidase [Clostridium acetobutylicum ATCC
           824]
 gi|325508693|gb|ADZ20329.1| coproporphyrinogen III oxidase [Clostridium acetobutylicum EA 2018]
          Length = 374

 Score = 45.8 bits (107), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 1/90 (1%)

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
           L + +Q+  DR+LK + R HT  E+     R R++  +  I+ D + G P +T +DF+ +
Sbjct: 113 LSIGLQACQDRLLKKLGRIHTLKEFTVAFKRARNLGFN-NINVDLMFGIPDQTLEDFKES 171

Query: 351 MDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++ + K+      S+      GTP   M E
Sbjct: 172 LEFITKLKPEHISSYSLIVEEGTPYFKMNE 201


>gi|319899915|ref|YP_004159643.1| coproporphyrinogen III oxidase, anaerobic [Bacteroides helcogenes P
           36-108]
 gi|319414946|gb|ADV42057.1| coproporphyrinogen III oxidase, anaerobic [Bacteroides helcogenes P
           36-108]
          Length = 377

 Score = 45.4 bits (106), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 38/117 (32%), Positives = 51/117 (43%), Gaps = 14/117 (11%)

Query: 293 LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352
           + +Q+  D  LK +NRRH + +    I+R R       IS D I G PGETD   R   D
Sbjct: 116 MGIQTFDDPTLKLLNRRHNSAQATTAIERCRQADFH-NISIDLIYGLPGETDK--RWKHD 172

Query: 353 LVDKIG----YAQAFSFKYSPRLGTPGSNMLE-----QVDENVKAERLLCLQKKLRE 400
           L   +G    +  A+   Y    GTP   ML+     +VDE         L + L E
Sbjct: 173 LQQAVGLNVEHISAYHLTYEK--GTPIYEMLQTCHIREVDEESSVRFFTTLTETLVE 227


>gi|268325259|emb|CBH38847.1| conserved hypothetical protein containing B12 binding domain,
           radical SAM superfamily [uncultured archaeon]
          Length = 440

 Score = 45.4 bits (106), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 51/239 (21%), Positives = 106/239 (44%), Gaps = 15/239 (6%)

Query: 179 FLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLID-NGVCEITLLGQNVNAWRG 237
           ++    GC   C FC + + +    +R   ++VDE + +++      I L+G N+N    
Sbjct: 201 YVNANRGCPNDCIFCSI-FNKKWR-TRDPQKIVDEFKYVVEVYNADSIYLVGDNLN---- 254

Query: 238 KGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQS 297
             LD +   F  L   +   K  +R     ++ +D++  LI        +   +    +S
Sbjct: 255 --LDSK--WFLTLCDEILTQKLDIRWVAVGANAQDINYRLINKMAKSGCVS--ISYGFES 308

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
           GS ++L SMN+ ++A +++  ++   ++  ++ I + FI+G PGE +     T+  + K 
Sbjct: 309 GSQKMLDSMNKNYSAKKFKTTVNITNNM--NMHIGASFILGAPGENEATLNKTLKFIRKS 366

Query: 358 GYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEV 416
            + +  S    P  G+     +  +   +K   +  L++  R+    F D    +I EV
Sbjct: 367 DFERVSSSSLVPLPGSKVYYKMCSILPELKDIDMFSLEEIKRKYVDIFCDVSYKKIEEV 425


>gi|328952122|ref|YP_004369456.1| Radical SAM domain protein [Desulfobacca acetoxidans DSM 11109]
 gi|328452446|gb|AEB08275.1| Radical SAM domain protein [Desulfobacca acetoxidans DSM 11109]
          Length = 437

 Score = 45.4 bits (106), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 50/209 (23%), Positives = 88/209 (42%), Gaps = 19/209 (9%)

Query: 185 GCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLID-NGVCEITLLGQNVNAWRGKGLDG 242
           GC   C+FC VP   G     R + +V+DE + L+    +  I  +  N        L G
Sbjct: 170 GCPYHCSFCEVPIVYGHTYRRRPIGEVLDEIKTLVKVTSLRRIYFVDDN--------LTG 221

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDC-LIKAHGDLDVLMPYLHLPVQSGSDR 301
            +    +L   L  +       +T +  RD+    L K  G       ++++ +++    
Sbjct: 222 HRDYAKELFKGLQPLNIHWSCLWTINTSRDVELLDLAKKAGCY-----HINIGIENVCPE 276

Query: 302 ILKSMNR-RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
            + S+ + ++   EY  ++ R+R     +  S +F+ G  G+T   F  T++ V++I   
Sbjct: 277 SINSIAKVQNPVEEYEWLLARLRER--GLFYSLNFMFGLDGDTMALFDKTLEFVERIKAP 334

Query: 361 QAFSFKYSPRLGTPGSNMLEQVDENVKAE 389
            AF    +PR GTP    L Q     K E
Sbjct: 335 MAFFNSITPRRGTPLWEQLSQEGRVHKPE 363


>gi|194292679|ref|YP_002008586.1| oxidoreductase [Cupriavidus taiwanensis LMG 19424]
 gi|193226583|emb|CAQ72534.1| putative oxidoreductase, Radical SAM; similar to Anaerobic
           Mg-protoporphyrin IX monomethyl ester oxidative cyclase
           [Cupriavidus taiwanensis LMG 19424]
          Length = 474

 Score = 45.4 bits (106), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 53/209 (25%), Positives = 87/209 (41%), Gaps = 31/209 (14%)

Query: 185 GCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK 244
           GC   CTFC+ P T G    R+ S           + + E+  + +N+   +    D + 
Sbjct: 206 GCRSRCTFCLWPQTVGGHRYRTRSAA---------SVIAEVKWIKENMPEVKEIMFDDD- 255

Query: 245 CTFSDLLYSLSEI-KGLVRLRYTTSHPRDMSDCLIKAHGDLDVL-------MPYLHLPVQ 296
            TF+D    + EI +GL +L  T S       C  KA+     L       +  L +  +
Sbjct: 256 -TFTDFKPRVEEIARGLGQLGVTWS-------CNAKANVPYSTLKIMKENGLRLLLVGYE 307

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
           SG D+IL ++ +       R+  +  R +   I I   FI+G PGET +    T++   +
Sbjct: 308 SGDDQILLNIKKGLRTDIARRFTEDCRKL--GIQIHGTFILGLPGETRETIEKTIEYAKE 365

Query: 357 IGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
           I      + + S     PG+ +  Q  EN
Sbjct: 366 I---NPHTIQVSLAAPYPGTTLYRQAVEN 391


>gi|238926286|ref|ZP_04658046.1| coproporphyrinogen oxidase [Selenomonas flueggei ATCC 43531]
 gi|238885966|gb|EEQ49604.1| coproporphyrinogen oxidase [Selenomonas flueggei ATCC 43531]
          Length = 501

 Score = 45.4 bits (106), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 37/62 (59%), Gaps = 1/62 (1%)

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
           QS  +R L+ + R HT  +  +++  IR+   D+ I+ D I+G PGET +D RATM  V 
Sbjct: 295 QSMQERTLERIGRHHTPSDIVRMLQDIRASM-DVHINMDVILGLPGETAEDVRATMAAVT 353

Query: 356 KI 357
            +
Sbjct: 354 AL 355


>gi|113477014|ref|YP_723075.1| radical SAM family protein [Trichodesmium erythraeum IMS101]
 gi|110168062|gb|ABG52602.1| Radical SAM [Trichodesmium erythraeum IMS101]
          Length = 540

 Score = 45.4 bits (106), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 64/250 (25%), Positives = 110/250 (44%), Gaps = 37/250 (14%)

Query: 186 CDKFCTFCVVPYT----RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD 241
           C + C FC+  Y     R   +  SL   +  AR L  N    + LLG +V         
Sbjct: 235 CPEMCRFCLASYLTLPFRSASLEESLIPAI--ARGL--NVTKRLGLLGASVT-------- 282

Query: 242 GEKCTFSDLLYSLSEIK-GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300
            +   F  LL  LS+ K   +RL   +     +++ L K   + D     + + ++SGSD
Sbjct: 283 -QHPEFESLLDYLSQSKYDDIRLSIASVRTNTVTEKLAKILANRDT--KSITIAIESGSD 339

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDF--IVGFPGETDDDFRATMDLVDKIG 358
           R+ K +N++    E  +II    + +        F  +VG PGE ++D  AT++++  + 
Sbjct: 340 RLRKIINKK---LENEEIIQAAINAKAGGLKGIKFYGMVGLPGEEEEDLDATVEMILTLK 396

Query: 359 YAQA---FSF---KYSPRLGTPGSNMLEQVDENVKAE-RLLCLQKKLREQQVSFN-DACV 410
            A      S     + P+  TP     +    N ++E RL  L+KKLR + + F  ++  
Sbjct: 397 KAVPGLRLSLGCSTFVPKSHTP----FQWFGVNYQSEKRLRFLEKKLRSKGIDFRPESYK 452

Query: 411 GQIIEVLIEK 420
             +I+ LI +
Sbjct: 453 WSVIQGLISR 462


>gi|89072513|ref|ZP_01159085.1| hypothetical protein SKA34_18349 [Photobacterium sp. SKA34]
 gi|89051617|gb|EAR57070.1| hypothetical protein SKA34_18349 [Photobacterium sp. SKA34]
          Length = 312

 Score = 45.4 bits (106), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 48/102 (47%), Gaps = 9/102 (8%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +L L +Q+ +++ LK +NR H    Y  I  R R++   I + +  IVG PG+T  D   
Sbjct: 141 WLELGLQTANEKTLKRINRGHDFAFYATITQRARAL--GIKVCTHLIVGLPGDTKQD--- 195

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERL 391
            +D + K+        K  P     GS M     +  KAERL
Sbjct: 196 NLDTISKVVSVGVDGIKLHPLHIVEGSKM----GQAFKAERL 233


>gi|24372904|ref|NP_716946.1| hypothetical protein SO_1326 [Shewanella oneidensis MR-1]
 gi|24347033|gb|AAN54391.1|AE015577_1 conserved hypothetical protein [Shewanella oneidensis MR-1]
          Length = 309

 Score = 45.4 bits (106), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 49/101 (48%), Gaps = 6/101 (5%)

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIK-AHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
           SEI GL         P ++ D L    H  +DV   +L L +Q+ +D+ L  +NR H   
Sbjct: 114 SEIVGLCVGTRPDCVPDNVLDLLASYQHKGVDV---WLELGLQTANDKTLHHINRGHNFA 170

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
            Y   + R RS    + + +  I+G PGET  D+ AT+  V
Sbjct: 171 CYCDTVSRARSR--GLKVCTHLILGLPGETPLDYMATLQAV 209


>gi|189426106|ref|YP_001953283.1| radical SAM protein [Geobacter lovleyi SZ]
 gi|189422365|gb|ACD96763.1| Radical SAM domain protein [Geobacter lovleyi SZ]
          Length = 518

 Score = 45.4 bits (106), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 72/303 (23%), Positives = 125/303 (41%), Gaps = 38/303 (12%)

Query: 100 DLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR-------VVDT 152
           D ++++ G  A  + E IL+  P V++V   +    L ELLE    G         V+  
Sbjct: 92  DTIILLGGGHATHQAELILKHHPEVDLVAVGEAEQTLLELLEALDNGSPLTAVPGLVMRD 151

Query: 153 DYSVEDKFERLSIVDGGY------------NRKRGVTA-FLTIQEGCDKFCTFCVVPYTR 199
           + ++    +R    D  +            N  + + A F++   GC   C+FC  P   
Sbjct: 152 NGTIRRTGQRPPWPDLDHLPFPFLWLHEAINVDQPLQAEFISSSRGCPAACSFCASPAFW 211

Query: 200 GIEIS-RSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257
           G  +  RS   V +E   L D+ G+  ++L      A R + ++        L   L E 
Sbjct: 212 GRRVRYRSAHSVAEEMLYLRDHYGLLYLSLRDDTFTADRRRTVE--------LCRELIER 263

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
           +  V + +      +  DC   A          + L V+SGS  +LK + +R T  +  +
Sbjct: 264 R--VNIFWNCQSRVEAIDCETLAWMR-RAGCECVQLGVESGSSAMLKLLGKRITPEQVVE 320

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
             D IR  +  + +S   I G P E+D D + T++L+ +I   Q    + +P    PG+ 
Sbjct: 321 AADLIR--QSGMQLSVYLITGIPEESDADRQQTINLIKRI---QPDDLQVAPLAYYPGTA 375

Query: 378 MLE 380
           + E
Sbjct: 376 LFE 378


>gi|15920235|ref|NP_375904.1| magnesium-protoporphyrin IX monomethyl ester oxidative cyclase 66
           kd subunit [Sulfolobus tokodaii str. 7]
 gi|15621017|dbj|BAB65013.1| 532aa long hypothetical magnesium-protoporphyrin ix monomethyl
           ester oxidative cyclase 66 kd subunit [Sulfolobus
           tokodaii str. 7]
          Length = 532

 Score = 45.4 bits (106), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 49/212 (23%), Positives = 92/212 (43%), Gaps = 16/212 (7%)

Query: 178 AFLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR 236
           A L    GC   C FC V  T G +  ++S ++++ E  K  + G   I  +      W 
Sbjct: 199 ACLETARGCPYACDFCSVTPTWGNKWRNKSNNRILKEISKAKELGYNWIFFVDDIFIVWP 258

Query: 237 GKGLDGEKCTFSDLLYSLSEIKGLVRLR--YTTSHPRDMSDCLIKAHGDLDVLMPYLHLP 294
            +        F  ++ + + I  + ++R   T  +P      LIK   D  + + +L   
Sbjct: 259 NRS--QRAALFRKMIETKNTINFIAQMRADVTARNPE-----LIKLASDAGLRIAFLG-- 309

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD-IAISSDFIVGFPGETDDDFRATMDL 353
           ++SGS  +LK M   H        I+ ++++  + + +    ++G P ET  D RAT+ L
Sbjct: 310 IESGSQEVLKKM---HKGLAVSDSINAVKTLHENGVIVLVGLMIGAPYETIKDIRATVKL 366

Query: 354 VDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
             K+    A + ++S     PG+ +  +  +N
Sbjct: 367 SRKLADVGADAVQFSIYTPLPGTRIFVESLKN 398


>gi|150401116|ref|YP_001324882.1| radical SAM domain-containing protein [Methanococcus aeolicus
           Nankai-3]
 gi|150013819|gb|ABR56270.1| Radical SAM domain protein [Methanococcus aeolicus Nankai-3]
          Length = 378

 Score = 45.4 bits (106), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 52/204 (25%), Positives = 82/204 (40%), Gaps = 26/204 (12%)

Query: 182 IQEGCDKFCTFCVVPYTRGIEI-SRSLSQVV------DEARKLIDNGVCEITLLGQNVNA 234
           I  GC   C FC  P   G ++  RS+  ++       + R +  N  C  +  G   N 
Sbjct: 148 ITRGCPHKCGFCQTPQIFGNKVRHRSIDNILKSINPNSDVRLITPNAFCYGSETGTKPNI 207

Query: 235 WRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIK-AHGDLDVLMPYLHL 293
            + + L  +       L+        VR  +     +D  + + K  H        YLH 
Sbjct: 208 EKLELLLKKLREGKGKLF-FGTFPSEVRPEFIQ---KDTIELVAKYCHNK------YLHF 257

Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
             QSGSD +LK + R HT  +    +D  +    ++    DFI GFP E +   + +M+L
Sbjct: 258 GAQSGSDEMLKLIRRGHTVNDVLNGVDLCKDY--NLIPKVDFIFGFPNENEFHRKESMEL 315

Query: 354 VDKI----GYAQAFSFKYSPRLGT 373
           ++ I    G   A  F   P +GT
Sbjct: 316 LNYIIKKGGKVHAHYF--MPLVGT 337


>gi|320530171|ref|ZP_08031241.1| radical SAM domain protein [Selenomonas artemidis F0399]
 gi|320137604|gb|EFW29516.1| radical SAM domain protein [Selenomonas artemidis F0399]
          Length = 502

 Score = 45.4 bits (106), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 37/63 (58%), Gaps = 1/63 (1%)

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
           QS  +R L+ + RRHT  E  Q++  +R+   D+ I+ D I+G PGET +D  ++M  V 
Sbjct: 295 QSMQERTLRRIGRRHTPAEVVQMLRDLRAAY-DVHINMDVILGLPGETAEDVASSMAQVT 353

Query: 356 KIG 358
            + 
Sbjct: 354 ALA 356


>gi|315181103|gb|ADT88017.1| radical SAM protein, family/Predicted Fe-S oxidoreductase [Vibrio
           furnissii NCTC 11218]
          Length = 286

 Score = 45.4 bits (106), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 2/69 (2%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +L L +Q+ +D+ LK +NR H    Y +I  R R++   I + +  IVG P E  DD  A
Sbjct: 117 WLELGLQTANDQTLKRINRGHDFACYAEITRRARAL--GIKVCTHLIVGLPKEGRDDNLA 174

Query: 350 TMDLVDKIG 358
           T++ V  +G
Sbjct: 175 TLEQVLAVG 183


>gi|86749195|ref|YP_485691.1| radical SAM binding protein [Rhodopseudomonas palustris HaA2]
 gi|86572223|gb|ABD06780.1| Radical SAM binding protein [Rhodopseudomonas palustris HaA2]
          Length = 598

 Score = 45.4 bits (106), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 72/170 (42%), Gaps = 30/170 (17%)

Query: 88  RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVV---GPQTYYRLPELLERA- 143
           R LK +R      L +V+ G +A A  +E+L     V+ VV   G     RL + +ER  
Sbjct: 119 RRLKAAR----PGLAIVLGGPLATALSQELLGTFAFVDYVVEGEGEAALSRLADAIERGE 174

Query: 144 ----------RFGKRVVDTDYSVEDKFERLS--IVDGGYN-RKRGV---TAFLTIQEGCD 187
                     R    +V          +RL     DG  + R RG+   +A+LT   GC 
Sbjct: 175 APSDVPALAHRGPGGIVRNPRGAPLDLDRLPHPARDGLASIRARGLPAPSAYLTTSRGCK 234

Query: 188 KFCTFCVVPYT-----RGIEISRSLSQVVDEARKLI-DNGVCEITLLGQN 231
            FCTFC VP +      G+   R    VVDE  +L+ D+GV    +   N
Sbjct: 235 AFCTFCTVPGSVRSLKSGVYRMRDPVDVVDEIEELVRDHGVSRFYMADDN 284


>gi|260767344|ref|ZP_05876283.1| hypothetical protein VFA_000397 [Vibrio furnissii CIP 102972]
 gi|260617667|gb|EEX42847.1| hypothetical protein VFA_000397 [Vibrio furnissii CIP 102972]
          Length = 310

 Score = 45.4 bits (106), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 2/69 (2%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +L L +Q+ +D+ LK +NR H    Y +I  R R++   I + +  IVG P E  DD  A
Sbjct: 141 WLELGLQTANDQTLKRINRGHDFACYAEITRRARAL--GIKVCTHLIVGLPKEGRDDNLA 198

Query: 350 TMDLVDKIG 358
           T++ V  +G
Sbjct: 199 TLEQVLAVG 207


>gi|315425366|dbj|BAJ47032.1| Mg-protoporphyrin IX monomethyl ester oxidative cyclase [Candidatus
           Caldiarchaeum subterraneum]
 gi|315426546|dbj|BAJ48176.1| anaerobic magnesium-protoporphyrin IX monomethyl ester cyclase
           [Candidatus Caldiarchaeum subterraneum]
          Length = 459

 Score = 45.4 bits (106), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 63/287 (21%), Positives = 119/287 (41%), Gaps = 42/287 (14%)

Query: 114 GEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRK 173
            + +++ S +  V  G   YY  P  L +        D      + ++R  + + GY   
Sbjct: 141 AKRVVKSSAVAEVANGGGMYYTGPRPLVKDLDILGFPDRSLYDNETYKRYYLRNYGYT-- 198

Query: 174 RGVTAFLTIQEGCDKFCTFCVVP-YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNV 232
             +T+ +    GC   C+FC  P Y R   + R   ++VDE  ++               
Sbjct: 199 --MTSMIA-SRGCPFSCSFCWRPDYGRVYRVRRP-ERIVDEMEEI--------------- 239

Query: 233 NAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL-RYTTSHPRD-MSDCLIKAHGDLDVLMPY 290
             +R      E+  F+D L+ ++  K ++++     S   D + +CL +A    D +  Y
Sbjct: 240 -RYR---FGYERIWFADELF-IANKKHVIKICEEIISRKLDVLWECLARADLIDDDVAKY 294

Query: 291 LH--------LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGE 342
           +           +++G DR LK MN++ T  +  + +  +  VR  I     FI+G+PGE
Sbjct: 295 MRKAGCHKIIFGLEAGDDRTLKLMNKQLTVKQSEKAVKTV--VRHGIKAGGFFILGYPGE 352

Query: 343 TDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAE 389
           T +    T+    ++       F  +     PG+ + EQV + + +E
Sbjct: 353 TTETMLKTIKFASRLPLDY---FSMTIPYPLPGTKLYEQVKDRMISE 396


>gi|284009139|emb|CBA76158.1| hypothetical protein ARN_33810 [Arsenophonus nasoniae]
          Length = 119

 Score = 45.1 bits (105), Expect = 0.023,   Method: Composition-based stats.
 Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 10/87 (11%)

Query: 50  SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCV 109
           + GY+ V S  DADL+++NTC   + A ++    +G   N       E G   V+V GC+
Sbjct: 6   TDGYQIVASYHDADLVIVNTCGFIDSAVQESLEAIGEALN-------ENGK--VIVTGCL 56

Query: 110 AQAEGEEILRRSPIVNVVVGPQTYYRL 136
              E ++I    P V  + GP +Y ++
Sbjct: 57  GAKE-DQIREVHPKVLAITGPHSYEQM 82


>gi|75906809|ref|YP_321105.1| radical SAM family protein [Anabaena variabilis ATCC 29413]
 gi|75700534|gb|ABA20210.1| Radical SAM [Anabaena variabilis ATCC 29413]
          Length = 544

 Score = 45.1 bits (105), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 63/260 (24%), Positives = 113/260 (43%), Gaps = 37/260 (14%)

Query: 185 GCDKFCTFCVVPYT----RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL 240
            C + C FC+  Y     R   ++ SL   +++  ++ +     + LLG +V        
Sbjct: 233 SCPEMCRFCMASYLTLPFRTASLTDSLIPAIEKGLQVTNR----LGLLGASVT------- 281

Query: 241 DGEKCTFSDLLYSLSEIK-GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
             +   F  LL  +S+ K   VRL   +     +++ L K     D     L + V+SGS
Sbjct: 282 --QHPEFETLLDYISQPKYDDVRLSIASVRTNTVTEQLAKTLAKRDTRS--LTIAVESGS 337

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPD--IAISSDFIVGFPGETDDDFRATMDLVDKI 357
           ++I + +N++       +II    + +     A+    +VG PGET +D  AT+ ++  I
Sbjct: 338 EKIRQIINKK---LHNDEIIQAAINAKAGGLTALKLYGMVGLPGETPEDLDATVTMMRSI 394

Query: 358 GYAQA------FSFKYSPRLGTPGSNMLEQVDENVKAE-RLLCLQKKLREQQVSFN-DAC 409
             A            + P+  TP     +    N +AE RL  LQK+L+ Q + F  ++ 
Sbjct: 395 KKAAPGLRLTLGCSTFVPKAHTP----FQWYGVNRQAEKRLQSLQKQLKPQGIDFRPESY 450

Query: 410 VGQIIEVLIEKHGKEKGKLV 429
              II+ LI +  +   +L+
Sbjct: 451 NWSIIQALISRGDRRISQLL 470


>gi|209520013|ref|ZP_03268791.1| hopanoid biosynthesis associated radical SAM protein HpnJ
           [Burkholderia sp. H160]
 gi|209499552|gb|EDZ99629.1| hopanoid biosynthesis associated radical SAM protein HpnJ
           [Burkholderia sp. H160]
          Length = 473

 Score = 45.1 bits (105), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 54/211 (25%), Positives = 90/211 (42%), Gaps = 35/211 (16%)

Query: 185 GCDKFCTFCVVPYTRGIEISR--SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG 242
           GC   CTFC+ P T G    R  S+  V++E + + DN + E+            K +  
Sbjct: 205 GCRSKCTFCLWPQTVGGHRYRVRSVENVLEEVKWIRDN-MPEV------------KEIMF 251

Query: 243 EKCTFSDLLYSLSEI-KGLVRLRYTTSHPRDMSDCLIKAHGDLDVL-------MPYLHLP 294
           +  TF+D      EI +G+ +L  T S       C  KA+     L       +  L + 
Sbjct: 252 DDDTFTDFKPRAEEIARGMGKLGVTWS-------CNAKANVPYSTLKIMKENGLRLLLVG 304

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
            +SG D+IL ++ +       R+     R++   I +   FI+G PGET +  + T++  
Sbjct: 305 YESGDDQILVNVKKGLRTDIARRFAQDCRTL--GIKVHGTFILGLPGETPETIQKTIEYA 362

Query: 355 DKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            +I      + + S     PG+ +  Q  EN
Sbjct: 363 KEI---NPLTIQVSLAAPYPGTTLYNQAVEN 390


>gi|127511966|ref|YP_001093163.1| putative radical SAM protein [Shewanella loihica PV-4]
 gi|126637261|gb|ABO22904.1| conserved hypothetical radical SAM protein [Shewanella loihica
           PV-4]
          Length = 330

 Score = 45.1 bits (105), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 2/69 (2%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +L L +QS +   LK +NR H   EYR  +  IR+ +  + + +  I+G PGE+ +DF A
Sbjct: 161 WLELGLQSANLETLKRINRGHGFEEYRDTV--IRARKAGLKVCTHLILGLPGESHEDFLA 218

Query: 350 TMDLVDKIG 358
           +   V   G
Sbjct: 219 SHRAVLDAG 227


>gi|15805169|ref|NP_293856.1| coproporphyrinogen III oxidase [Deinococcus radiodurans R1]
 gi|6457795|gb|AAF09719.1|AE001875_5 coproporphyrinogen III oxidase, putative [Deinococcus radiodurans
           R1]
          Length = 388

 Score = 45.1 bits (105), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 47/96 (48%), Gaps = 7/96 (7%)

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGET-DDDFRATMDL 353
           VQS  D  LK + RRH A + R  + R+  +  D  +S D I   PG+  D D    ++L
Sbjct: 131 VQSLDDATLKFLGRRHDARQARDAVSRL--IAQDFRVSGDLITAVPGQPLDSDIHGLVEL 188

Query: 354 VDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAE 389
              +G+  A++    P  GT  +    QVDE+ + E
Sbjct: 189 --GVGHVSAYTLTIEP--GTEFARRGVQVDEDAERE 220


>gi|325968069|ref|YP_004244261.1| radical SAM protein [Vulcanisaeta moutnovskia 768-28]
 gi|323707272|gb|ADY00759.1| Radical SAM domain protein [Vulcanisaeta moutnovskia 768-28]
          Length = 562

 Score = 45.1 bits (105), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 52/210 (24%), Positives = 90/210 (42%), Gaps = 24/210 (11%)

Query: 176 VTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKL-ID-NGVCEITLLGQNVN 233
           +   + +  GC + C FC  P   G+  S      +D   KL I+  G  EITL  +   
Sbjct: 240 IGGMVEVTRGCGRGCQFCT-PTLSGMIRSFPFEGHIDREIKLNIEVGGFSEITLHSEEFF 298

Query: 234 AWRGKGLDGEKCTFSDLL---YSLSEIKG---LVRLRYTTSHPRDMSDCLIKA---HGDL 284
            +  KG++       DL    Y L +  G    +   +TT+     +  LIK    + + 
Sbjct: 299 RYGAKGIEPNPDKVLDLTVKAYKLVKSYGDDHELTTDFTTAAVVKYAPKLIKEVSEYMNE 358

Query: 285 DVLMPYLHLPVQSGSDRILKS-MNRRHTAYEYRQIIDRIRSVRPDIAISSD--------F 335
                ++ + +++GS R+L+  M  +   Y+  Q  D +      I I +D         
Sbjct: 359 GGTWHFIEMGIETGSPRLLRMLMAGKALPYKPEQYPDVVEEA---IGILNDNYWVVVGTM 415

Query: 336 IVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           I+  PGETDDD   +++L+D+I   +  +F
Sbjct: 416 ILNLPGETDDDVVKSLELLDRISKLRVLTF 445


>gi|303235933|ref|ZP_07322536.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Prevotella disiens FB035-09AN]
 gi|302483806|gb|EFL46798.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Prevotella disiens FB035-09AN]
          Length = 388

 Score = 45.1 bits (105), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 36/102 (35%), Positives = 50/102 (49%), Gaps = 18/102 (17%)

Query: 292 HLPV-------QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA-ISSDFIVGFPGET 343
           H P+       Q+ S+  LK + RRH A + +  IDR+   R DI  IS D + GFP ET
Sbjct: 119 HFPINRISMGAQTFSEARLKFLRRRHKANDVKMAIDRLH--RADIHNISIDLMFGFPEET 176

Query: 344 ----DDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
               +DD    + L   + +  A+S  Y    GTP   +LEQ
Sbjct: 177 LQEWEDDIEKAIAL--NVEHLSAYSLMYEE--GTPLYRLLEQ 214


>gi|317152424|ref|YP_004120472.1| Radical SAM domain-containing protein [Desulfovibrio aespoeensis
           Aspo-2]
 gi|316942675|gb|ADU61726.1| Radical SAM domain protein [Desulfovibrio aespoeensis Aspo-2]
          Length = 667

 Score = 45.1 bits (105), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 37/60 (61%), Gaps = 2/60 (3%)

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           ++SGSD +L +MN++ TA + R      ++    +  +  FI+G+ GET +D R T+DL+
Sbjct: 304 IESGSDDVLAAMNKKTTAEQIRTFFRNCKAA--GMPSNGTFIIGYDGETAEDLRKTIDLL 361


>gi|297617277|ref|YP_003702436.1| radical SAM protein [Syntrophothermus lipocalidus DSM 12680]
 gi|297145114|gb|ADI01871.1| Radical SAM domain protein [Syntrophothermus lipocalidus DSM 12680]
          Length = 586

 Score = 45.1 bits (105), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 66/275 (24%), Positives = 112/275 (40%), Gaps = 51/275 (18%)

Query: 100 DLLVVVAGCVAQAEGEEI-------LRRSPIVNVVV---GPQTYYRLPELLER------- 142
           DL  V+ GCV    G E+       L   P ++ +V   G +T+  L   L+        
Sbjct: 77  DLKQVLPGCVVILGGPEVSFDSVDLLEAHPFIDGIVRGEGEETFLELLRSLDNRGSGLVK 136

Query: 143 ---ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRK----RGVTAFLTIQEGCDKFCTFCV 194
               R G RV+   YS + +   RL  +   Y ++     G   +     GC   C++C+
Sbjct: 137 GVTWREGNRVI---YSEDRNPITRLDSIPFPYEKETENLNGRIVYYETSRGCPFNCSYCI 193

Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL 254
              TRG+    +L +V ++ RKL+     EI  + +  NA         K     + + +
Sbjct: 194 SSTTRGVRWF-TLERVKEDLRKLLQIKPKEIKFVDRTFNA-------NPKRMREIMDFLI 245

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY----LHLPVQSGSDRILKSMNRRH 310
            E K       T+ H    +D L +   +    +P       + VQS +  +L+++NR  
Sbjct: 246 QEAKE------TSCHFEIAADRLDQGTIEFLKSVPLGVFRFEIGVQSTNPEVLQAVNR-- 297

Query: 311 TAYEYRQIIDRIRSVRP--DIAISSDFIVGFPGET 343
               +  +   ++S+R   +I I  D I G PGET
Sbjct: 298 -PMNWELLESNVKSIRQQHNIFIHLDLIAGLPGET 331


>gi|269103461|ref|ZP_06156158.1| hypothetical protein VDA_002887 [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268163359|gb|EEZ41855.1| hypothetical protein VDA_002887 [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 309

 Score = 45.1 bits (105), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 39/69 (56%), Gaps = 2/69 (2%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +L L +Q+ +D+ LK +NR H    Y +I  R R++   I + +  IVG PG+T  D   
Sbjct: 141 WLELGLQTANDKTLKRINRGHDFACYAEITRRARAL--GIKVCTHLIVGLPGDTKQDNLE 198

Query: 350 TMDLVDKIG 358
           T+  V ++G
Sbjct: 199 TIKRVVEVG 207


>gi|330507344|ref|YP_004383772.1| radical SAM domain-containing protein [Methanosaeta concilii GP-6]
 gi|328928152|gb|AEB67954.1| radical SAM domain protein [Methanosaeta concilii GP-6]
          Length = 377

 Score = 44.7 bits (104), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 56/211 (26%), Positives = 86/211 (40%), Gaps = 27/211 (12%)

Query: 176 VTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDNGVCEITLLGQNVNA 234
           + A + I  GC   CT+C  P   G  +  R++  V   AR+  D     I     N  A
Sbjct: 140 ILAPIEISRGCPWGCTYCQTPRLFGRCMRHRTIPVVARFARRHKD-----IRFTSPNSLA 194

Query: 235 WRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY---- 290
           +   G DG +     +   L E+    +  Y  + P ++    +     L+++  Y    
Sbjct: 195 Y---GSDGRRPRLEKVKALLEELSEQKKPIYFGTFPSEVRPDFVSDEA-LEIITKYCANK 250

Query: 291 -LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI--RSVRPDIAISSDFIVGFPGETDDDF 347
            + L  QSGS  +LKS+ R H   E     + I    + P +    D I G P E+ +D 
Sbjct: 251 TISLGGQSGSPAVLKSIGRGHGRQEIESACEHILDHGLIPLV----DLIFGLPMESAEDQ 306

Query: 348 RATMDLV----DKIGYAQAFSFKYSPRLGTP 374
             T+DL     +K G  +A  F   P  GTP
Sbjct: 307 HMTLDLARWIEEKGGKVRAHRFM--PLPGTP 335


>gi|54307748|ref|YP_128768.1| putative Fe-S oxidoreductase [Photobacterium profundum SS9]
 gi|46912171|emb|CAG18966.1| putative Fe-S oxidoreductase [Photobacterium profundum SS9]
          Length = 314

 Score = 44.7 bits (104), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 2/69 (2%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +L L +Q+ +D+ LK +NR H    Y +I  R R++   I + +  IVG PG+T +D   
Sbjct: 141 WLELGLQTANDKTLKRINRGHDFACYEKITKRARAM--GIKVCTHLIVGLPGDTKEDNLE 198

Query: 350 TMDLVDKIG 358
           T+     +G
Sbjct: 199 TLKRTIAVG 207


>gi|116753343|ref|YP_842461.1| radical SAM domain-containing protein [Methanosaeta thermophila PT]
 gi|116664794|gb|ABK13821.1| Radical SAM domain protein [Methanosaeta thermophila PT]
          Length = 497

 Score = 44.7 bits (104), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 50/226 (22%), Positives = 93/226 (41%), Gaps = 34/226 (15%)

Query: 171 NRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQ 230
           NR   +   + I  GC + C FC  P  R +   R +S ++++ R  +  G+ ++ L  +
Sbjct: 205 NRGATIAGIVEIGRGCWRGCAFC-SPTMRSLR-HRPVSSILEDVRVNMREGMRDVLLHSE 262

Query: 231 NVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSD-CLIKAHGDLDVLMP 289
           +V  +  +G+  E     +L  S+ E+         + H  D+S   L   H  +D+L  
Sbjct: 263 DVFTYGSRGMRPEPDKVLELFRSVKEL---------SPHTIDVSHLSLATVHQSMDLLRE 313

Query: 290 ------------YLH--LPVQSGSDRILK-SMNRRHTAYEYRQIIDRIRSV-----RPDI 329
                       Y+   + +++GS R+L+  M R+       +  D +R           
Sbjct: 314 ISEIVGVGTDQRYMSAWIGIETGSCRMLEMHMPRKALPESPERWPDIVRECYALFHEEHW 373

Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK--YSPRLGT 373
              +  ++G PGET DD   T +LV+ +           ++P  GT
Sbjct: 374 VPVASLVLGLPGETADDVVRTTELVESLKDYTGLMLPLFFTPMAGT 419


>gi|23016883|ref|ZP_00056635.1| COG1032: Fe-S oxidoreductase [Magnetospirillum magnetotacticum
           MS-1]
          Length = 470

 Score = 44.7 bits (104), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 44/197 (22%), Positives = 88/197 (44%), Gaps = 31/197 (15%)

Query: 169 GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITL 227
           GY ++ G++  +    GC   C+FC      GI + R + +V+DE + +++N G+ +   
Sbjct: 184 GYFKEVGLSWEIMASRGCKAHCSFCYKFMGDGIGL-REVGEVLDEIQYIMENYGITKFYF 242

Query: 228 LGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT--TSHPRDMSD----CLIKAH 281
           + +N                    YS  E K    L +T   S   D  D     + K H
Sbjct: 243 VDENF------------MQIKKYFYSFLEEKKNRGLNFTFIASSRIDEIDEERISIAKEH 290

Query: 282 GDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS--VRPDIAISSDFIVGF 339
           G     +  L   V+S +   L ++++R    +  + +  +R   +RP +    + I+GF
Sbjct: 291 G-----LTALTTGVESVNQATLNAIDKRIDIEDAERAVKLLRQYGIRPHV----NLIIGF 341

Query: 340 PGETDDDFRATMDLVDK 356
             E++DD++A ++ +++
Sbjct: 342 EWESEDDYKAMLEFIER 358


>gi|86147381|ref|ZP_01065694.1| hypothetical protein MED222_00962 [Vibrio sp. MED222]
 gi|85834809|gb|EAQ52954.1| hypothetical protein MED222_00962 [Vibrio sp. MED222]
          Length = 317

 Score = 44.7 bits (104), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 2/69 (2%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +L L +Q+ +D+ LK +NR H    Y  I  R R++   I + +  IVG P ET  D   
Sbjct: 143 WLELGLQTANDKTLKRINRGHDFTVYETITQRARAL--GIKVCTHLIVGLPKETKADNLE 200

Query: 350 TMDLVDKIG 358
           T+D V   G
Sbjct: 201 TLDKVLAAG 209


>gi|220928316|ref|YP_002505225.1| radical SAM protein [Clostridium cellulolyticum H10]
 gi|219998644|gb|ACL75245.1| Radical SAM domain protein [Clostridium cellulolyticum H10]
          Length = 443

 Score = 44.7 bits (104), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 57/104 (54%), Gaps = 8/104 (7%)

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
           + L +QS +D+ LK MN RH + E +++I+ +  +     ++ D I GF G+T+++ +  
Sbjct: 172 ISLGIQSFNDKYLKQMNCRHNSKEAKEVINML--LEKGFNVNIDLIYGFQGQTEEELQ-- 227

Query: 351 MDLVDKIGYAQAFSFKYSP-RL--GTPGSNMLEQVDE-NVKAER 390
           MDL + + +         P RL   TP  N LE+  E N++A +
Sbjct: 228 MDLEEILNFKNLHHISIFPLRLVTQTPLYNKLEKQQELNIQAHQ 271


>gi|294647163|ref|ZP_06724762.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Bacteroides ovatus SD CC 2a]
 gi|294809226|ref|ZP_06767942.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Bacteroides xylanisolvens SD CC 1b]
 gi|292637450|gb|EFF55869.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Bacteroides ovatus SD CC 2a]
 gi|294443620|gb|EFG12371.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Bacteroides xylanisolvens SD CC 1b]
          Length = 376

 Score = 44.7 bits (104), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 74/163 (45%), Gaps = 21/163 (12%)

Query: 254 LSEIKGLVRLRYTTSHPRDMS-----DCLIKAHGDLDVLMPY--LHLPVQSGSDRILKSM 306
             +I   +R  Y  +H ++++     D L + +  +   +P+  L + +Q+  D  LK +
Sbjct: 70  FEQIFDTIRKHYGLNHCQEITLEANPDDLSQEYLGMLSSLPFNRLSMGIQTFDDATLKLL 129

Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGET----DDDFRATMDLVDKIGYAQA 362
            RRH A    + IDR R       IS D I G PGET    ++D R  + L   + +  A
Sbjct: 130 RRRHNARTAIEAIDRCRKAGFQ-NISIDLIYGLPGETKERWENDLRQAISL--NVEHISA 186

Query: 363 FSFKYSPRLGTPGSNMLEQ-----VDENVKAERLLCLQKKLRE 400
           +   Y     TP  NML+Q     VDE+   E    L + L++
Sbjct: 187 YHLIYEE--DTPIYNMLKQHQISEVDEDSSLEFFTLLIEHLQK 227


>gi|73538726|ref|YP_299093.1| radical SAM family protein [Ralstonia eutropha JMP134]
 gi|72122063|gb|AAZ64249.1| Radical SAM [Ralstonia eutropha JMP134]
          Length = 474

 Score = 44.3 bits (103), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 52/209 (24%), Positives = 87/209 (41%), Gaps = 31/209 (14%)

Query: 185 GCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK 244
           GC   CTFC+ P T G    R+ S          ++ + E+  + +N+   +    D + 
Sbjct: 206 GCRSRCTFCLWPQTVGGHRYRTRSA---------ESVIAEVKWIKENMPEVKEIMFDDD- 255

Query: 245 CTFSDLLYSLSEI-KGLVRLRYTTSHPRDMSDCLIKAHGDLDVL-------MPYLHLPVQ 296
            TF+D    + EI +GL +L  T S       C  KA+     L       +  L +  +
Sbjct: 256 -TFTDFKPRVEEIARGLGKLGVTWS-------CNAKANVPYSTLKIMKENGLRLLLVGYE 307

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
           SG D+IL ++ +       R+  +  R +   I I   FI+G PGET      T+    +
Sbjct: 308 SGDDQILLNIKKGLRTDIARRFTEDCRKL--GIQIHGTFILGLPGETQQTIEKTIAYAKE 365

Query: 357 IGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
           I      + + S     PG+ + +Q  +N
Sbjct: 366 I---NPHTIQVSLAAPYPGTTLYQQAVDN 391


>gi|227548786|ref|ZP_03978835.1| coproporphyrinogen dehydrogenase [Corynebacterium lipophiloflavum
           DSM 44291]
 gi|227079116|gb|EEI17079.1| coproporphyrinogen dehydrogenase [Corynebacterium lipophiloflavum
           DSM 44291]
          Length = 367

 Score = 44.3 bits (103), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 48/192 (25%), Positives = 77/192 (40%), Gaps = 16/192 (8%)

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
           T S+P   S    +  G L+     + L +QS S  +LK ++R HT       +      
Sbjct: 90  TESNPESTSPEYFE--GLLEAGFTRVSLGMQSASTPVLKVLDRMHTPGRAVAAVKEALDA 147

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-----NMLE 380
             +  ++ D I G P ETDDD RAT+D V   G     ++      GT  +       L 
Sbjct: 148 GFE-HVNLDMIYGTPTETDDDVRATLDAVLSTGVDHVSAYSLIVEDGTAMARKVRRGELP 206

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDAC-----VGQIIEVLIEKHGKEKGKLVGRSPWL 435
              E+V A+R   +   L +    + +        GQ    L+   G   G+  G  P  
Sbjct: 207 APSEDVYADRYEIISSTLEDAGFGWYEVSNWAREGGQCRHNLLYWRG---GQWWGAGPGA 263

Query: 436 QSVVLNSKNHNI 447
            S + +++ HN+
Sbjct: 264 HSFIGSTRFHNV 275


>gi|117921487|ref|YP_870679.1| putative radical SAM protein [Shewanella sp. ANA-3]
 gi|117613819|gb|ABK49273.1| conserved hypothetical radical SAM protein [Shewanella sp. ANA-3]
          Length = 309

 Score = 44.3 bits (103), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 55/125 (44%), Gaps = 16/125 (12%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +L L +Q+ +DR L  +NR H    Y   + R RS    + + +  I+G PGET  D+ A
Sbjct: 147 WLELGLQTANDRTLHKINRGHDFACYCDTVARARS--RGLKVCTHLILGLPGETHLDYMA 204

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDAC 409
           T+  V   G       K  P     GS M +      +A RL  L        +    AC
Sbjct: 205 TLQAVLAQGVD---GLKLHPLHVVEGSTMAKA----WRAGRLPLL-------SIEEYAAC 250

Query: 410 VGQII 414
           VG+++
Sbjct: 251 VGELV 255


>gi|237714861|ref|ZP_04545342.1| coproporphyrinogen III oxidase [Bacteroides sp. D1]
 gi|229445186|gb|EEO50977.1| coproporphyrinogen III oxidase [Bacteroides sp. D1]
          Length = 337

 Score = 44.3 bits (103), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 52/171 (30%), Positives = 78/171 (45%), Gaps = 22/171 (12%)

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTT--SHPRDMSDCLIKAHGDLDVLMPY--LHLPVQSG 298
           EK  F  +  ++ +  GL   +  T  ++P D+S   +   G L  L P+  L + +Q+ 
Sbjct: 27  EKEDFEQIFDTIRKHYGLNHCQEITLEANPDDLSQEYL---GMLSSL-PFNRLSMGIQTF 82

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGET----DDDFRATMDLV 354
            D  LK + RRH A    + IDR R       IS D I G PGET    ++D R  + L 
Sbjct: 83  DDATLKLLRRRHNARTAIEAIDRCRKAGFQ-NISIDLIYGLPGETKERWENDLRQAISL- 140

Query: 355 DKIGYAQAFSFKYSPRLGTPGSNMLEQ-----VDENVKAERLLCLQKKLRE 400
             + +  A+   Y     TP  NML+Q     VDE+   E    L + L++
Sbjct: 141 -NVEHISAYHLIYEE--DTPIYNMLKQHQISEVDEDSSLEFFTLLIEHLQK 188


>gi|15899591|ref|NP_344196.1| hypothetical protein SSO2881 [Sulfolobus solfataricus P2]
 gi|13816240|gb|AAK42986.1| Conserved hypothetical protein [Sulfolobus solfataricus P2]
 gi|261601348|gb|ACX90951.1| Radical SAM domain protein [Sulfolobus solfataricus 98/2]
          Length = 502

 Score = 44.3 bits (103), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 71/303 (23%), Positives = 127/303 (41%), Gaps = 39/303 (12%)

Query: 74  EKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTY 133
           E    K +  LG     K S++KE   L VVV G  A    ++  R +   +V+      
Sbjct: 89  ETWTAKFFDELGE----KVSKLKEKFHLKVVVGGAGAWQLEKDPPRWA---DVIFLGHAE 141

Query: 134 YRLPELLERARFGK---RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190
              PE++++   G+   RVV   Y       +L  +    N  RG    + I  GC + C
Sbjct: 142 VDFPEVVKKLEQGEEVPRVVRGRYP-----RKLDEIPPIINPSRG--GEVQITRGCPRGC 194

Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDL 250
            FC V  T    IS  L  ++ E    +  G+ +++L+  ++  +  K L+         
Sbjct: 195 WFCSV--TPDTFISFPLDYIMREVEVNMKAGIKDVSLITDDMLLYGAKRLNEVNHDAIVR 252

Query: 251 LYSLSEIKGL--VRLRYTTSHPRDMSDCLIKAHGDL------DVLMPYLHLPVQSGSDRI 302
           LY+  +  G+  +   + ++ P  +S   +KA  ++        + P + L  ++GS++I
Sbjct: 253 LYAELKRAGVDYINFAHISAAPVKLSPKTVKAMAEIAEWNEEKAVSPVVGL--ETGSEKI 310

Query: 303 L-KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFI-------VGFPGETDDDFRATMDLV 354
             K M  +   + Y    D I  V     ++  +I       +G+P ETD D   ++ LV
Sbjct: 311 FNKYMKMKAFPWNYTNWKDLI--VESTAIMNESYIFPCYTMTIGYPEETDKDVEDSIKLV 368

Query: 355 DKI 357
           + I
Sbjct: 369 EYI 371


>gi|21221018|ref|NP_626797.1| coproporphyrinogen III oxidase [Streptomyces coelicolor A3(2)]
 gi|6714773|emb|CAB66237.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Streptomyces coelicolor A3(2)]
          Length = 435

 Score = 44.3 bits (103), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 52/109 (47%), Gaps = 6/109 (5%)

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           +QS    +LK ++R HT       +   R+   D  ++ D I G PGE+DDD+RA++D  
Sbjct: 182 MQSAKQHVLKILDRTHTPGRPEACVAEARAAGFD-HVNLDLIYGTPGESDDDWRASLDAA 240

Query: 355 DKIGYAQAFSFKYSPRLGTPGSNMLEQ-----VDENVKAERLLCLQKKL 398
              G     ++      GT  +  + +      D++V A+R L  ++ L
Sbjct: 241 LGAGPDHVSAYALIVEEGTQLARRIRRGEVPMTDDDVHADRYLIAEEAL 289


>gi|262406870|ref|ZP_06083419.1| coproporphyrinogen III oxidase [Bacteroides sp. 2_1_22]
 gi|262355573|gb|EEZ04664.1| coproporphyrinogen III oxidase [Bacteroides sp. 2_1_22]
          Length = 335

 Score = 44.3 bits (103), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 74/163 (45%), Gaps = 21/163 (12%)

Query: 254 LSEIKGLVRLRYTTSHPRDMS-----DCLIKAHGDLDVLMPY--LHLPVQSGSDRILKSM 306
             +I   +R  Y  +H ++++     D L + +  +   +P+  L + +Q+  D  LK +
Sbjct: 29  FEQIFDTIRKHYGLNHCQEITLEANPDDLSQEYLGMLSSLPFNRLSMGIQTFDDATLKLL 88

Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGET----DDDFRATMDLVDKIGYAQA 362
            RRH A    + IDR R       IS D I G PGET    ++D R  + L   + +  A
Sbjct: 89  RRRHNARTAIEAIDRCRKAGFQ-NISIDLIYGLPGETKERWENDLRQAISL--NVEHISA 145

Query: 363 FSFKYSPRLGTPGSNMLEQ-----VDENVKAERLLCLQKKLRE 400
           +   Y     TP  NML+Q     VDE+   E    L + L++
Sbjct: 146 YHLIYEE--DTPIYNMLKQHQISEVDEDSSLEFFTLLIEHLQK 186


>gi|8571396|gb|AAF76866.1|AF232919_5 MiaB-like protein [Sinorhizobium meliloti]
          Length = 51

 Score = 44.3 bits (103), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 21/32 (65%), Positives = 22/32 (68%), Gaps = 1/32 (3%)

Query: 23 VPQR-FFVKSYGCQMNVYDSLRMEDMFFSQGY 53
          VP R  FVK+YGCQMNVYDS RM D     GY
Sbjct: 19 VPARKVFVKTYGCQMNVYDSDRMSDALSRDGY 50


>gi|256787818|ref|ZP_05526249.1| coproporphyrinogen III oxidase [Streptomyces lividans TK24]
          Length = 410

 Score = 44.3 bits (103), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 52/109 (47%), Gaps = 6/109 (5%)

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           +QS    +LK ++R HT       +   R+   D  ++ D I G PGE+DDD+RA++D  
Sbjct: 157 MQSAKQHVLKILDRTHTPGRPEACVAEARAAGFD-HVNLDLIYGTPGESDDDWRASLDAA 215

Query: 355 DKIGYAQAFSFKYSPRLGTPGSNMLEQ-----VDENVKAERLLCLQKKL 398
              G     ++      GT  +  + +      D++V A+R L  ++ L
Sbjct: 216 LGAGPDHVSAYALIVEEGTQLARRIRRGEVPMTDDDVHADRYLIAEEAL 264


>gi|289771705|ref|ZP_06531083.1| oxygen-independent coproporphyrinogen III oxidase [Streptomyces
           lividans TK24]
 gi|289701904|gb|EFD69333.1| oxygen-independent coproporphyrinogen III oxidase [Streptomyces
           lividans TK24]
          Length = 413

 Score = 44.3 bits (103), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 52/109 (47%), Gaps = 6/109 (5%)

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           +QS    +LK ++R HT       +   R+   D  ++ D I G PGE+DDD+RA++D  
Sbjct: 160 MQSAKQHVLKILDRTHTPGRPEACVAEARAAGFD-HVNLDLIYGTPGESDDDWRASLDAA 218

Query: 355 DKIGYAQAFSFKYSPRLGTPGSNMLEQ-----VDENVKAERLLCLQKKL 398
              G     ++      GT  +  + +      D++V A+R L  ++ L
Sbjct: 219 LGAGPDHVSAYALIVEEGTQLARRIRRGEVPMTDDDVHADRYLIAEEAL 267


>gi|303243818|ref|ZP_07330158.1| Radical SAM domain protein [Methanothermococcus okinawensis IH1]
 gi|302485754|gb|EFL48678.1| Radical SAM domain protein [Methanothermococcus okinawensis IH1]
          Length = 383

 Score = 44.3 bits (103), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 50/199 (25%), Positives = 80/199 (40%), Gaps = 22/199 (11%)

Query: 182 IQEGCDKFCTFCVVPYTRGIEI-SRSLSQVV------DEARKLIDNGVCEITLLGQNVNA 234
           I  GC   C FC  P   G ++  RS+  ++       + R +  N +C  +  G   N 
Sbjct: 160 ITRGCPYKCRFCQTPQIFGSKVRHRSIDSILRLVNPNTDTRVISPNALCYGSKTGTKPNI 219

Query: 235 WRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP 294
            + + L  +       L+        VR  + T    +    LI  + D      +LH  
Sbjct: 220 EKLEKLLKKLSEGKGKLF-FGTFPSEVRPEFITKETVE----LIAKYCD----NKFLHFG 270

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL- 353
            QSG+D +LK + R HT  +    +D    +  ++    DFI GFP E +   + +M+L 
Sbjct: 271 AQSGNDEMLKYIRRGHTVNDVLNAVD--LCIDYNLIPKVDFIFGFPNENEFHRKDSMELL 328

Query: 354 ---VDKIGYAQAFSFKYSP 369
              + K G A A  F   P
Sbjct: 329 YYIIKKNGRAHAHYFMPLP 347


>gi|290960531|ref|YP_003491713.1| oxygen-independent coproporphyrinogen III oxidase [Streptomyces
           scabiei 87.22]
 gi|260650057|emb|CBG73173.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Streptomyces scabiei 87.22]
          Length = 410

 Score = 44.3 bits (103), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 53/109 (48%), Gaps = 6/109 (5%)

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           +QS    +LK ++R HT     + +   R+   D  ++ D I G PGE+DDD+RA++D  
Sbjct: 157 MQSARQHVLKILDRTHTPGRPERCVAEARAAGFD-HVNLDLIYGTPGESDDDWRASLDAA 215

Query: 355 DKIGYAQAFSFKYSPRLGTPGSNMLEQ-----VDENVKAERLLCLQKKL 398
              G     ++      GT  +  + +      D++V A+R L  ++ L
Sbjct: 216 LGAGPDHVSAYALIVEEGTQLARRIRRGEVPMTDDDVHADRYLIAEEML 264


>gi|323491064|ref|ZP_08096256.1| putative Fe-S oxidoreductase [Vibrio brasiliensis LMG 20546]
 gi|323314728|gb|EGA67800.1| putative Fe-S oxidoreductase [Vibrio brasiliensis LMG 20546]
          Length = 315

 Score = 44.3 bits (103), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 2/69 (2%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +L L +Q+ ++  LK +NR H    Y +I  R R++   I + +  IVG P ET  D  A
Sbjct: 141 WLELGLQTANNHTLKRINRGHDFECYAEITRRARAL--GIKVCTHLIVGLPKETRQDNIA 198

Query: 350 TMDLVDKIG 358
           TM  V ++G
Sbjct: 199 TMQQVLEVG 207


>gi|256827197|ref|YP_003151156.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Cryptobacterium curtum DSM 15641]
 gi|256583340|gb|ACU94474.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Cryptobacterium curtum DSM 15641]
          Length = 368

 Score = 44.3 bits (103), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 50/192 (26%), Positives = 82/192 (42%), Gaps = 25/192 (13%)

Query: 232 VNAWRGKGLDG-----EKCTFSDLLYSLSEIKGLVRLRYTTS---HPRDMSDCLIKAHG- 282
           V A R +G DG     E   F     +      L +L Y  S   H  D  +C I+A+  
Sbjct: 43  VLALRARGRDGLLSDIETVYFGGGTPTFLGPARLTQLLYALSLSMHLTDTVECTIEANPE 102

Query: 283 --------DLDVL-MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
                   DL  L    L L VQS  D +L  + R H+A + R+ ID       +++I  
Sbjct: 103 SLTRRMVRDLWALGANRLSLGVQSFDDTVLGILGRPHSADDARRAIDDAHDRFHNVSI-- 160

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP-----GSNMLEQVDENVKA 388
           D I G PG+T   F +++     +G +    +  +   GTP        +L  +DE+ +A
Sbjct: 161 DLICGIPGQTPGSFLSSVQEAIALGVSHISIYPLTIEEGTPFYSLYSKGLLAAIDEDEQA 220

Query: 389 ERLLCLQKKLRE 400
           + ++   + L++
Sbjct: 221 DAMIDASRILKQ 232


>gi|207111244|ref|ZP_03245406.1| conserved hypothetical ATP-binding protein [Helicobacter pylori
           HPKX_438_CA4C1]
          Length = 58

 Score = 44.3 bits (103), Expect = 0.045,   Method: Composition-based stats.
 Identities = 17/35 (48%), Positives = 24/35 (68%)

Query: 170 YNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
           + +K  + + L I  GCDK C +C+VP+TRG EIS
Sbjct: 18  FEKKAQIRSLLNISIGCDKKCAYCIVPHTRGKEIS 52


>gi|284174002|ref|ZP_06387971.1| hypothetical protein Ssol98_04985 [Sulfolobus solfataricus 98/2]
          Length = 496

 Score = 44.3 bits (103), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 71/303 (23%), Positives = 127/303 (41%), Gaps = 39/303 (12%)

Query: 74  EKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTY 133
           E    K +  LG     K S++KE   L VVV G  A    ++  R +   +V+      
Sbjct: 83  ETWTAKFFDELGE----KVSKLKEKFHLKVVVGGAGAWQLEKDPPRWA---DVIFLGHAE 135

Query: 134 YRLPELLERARFGK---RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190
              PE++++   G+   RVV   Y       +L  +    N  RG    + I  GC + C
Sbjct: 136 VDFPEVVKKLEQGEEVPRVVRGRYP-----RKLDEIPPIINPSRG--GEVQITRGCPRGC 188

Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDL 250
            FC V  T    IS  L  ++ E    +  G+ +++L+  ++  +  K L+         
Sbjct: 189 WFCSV--TPDTFISFPLDYIMREVEVNMKAGIKDVSLITDDMLLYGAKRLNEVNHDAIVR 246

Query: 251 LYSLSEIKGL--VRLRYTTSHPRDMSDCLIKAHGDL------DVLMPYLHLPVQSGSDRI 302
           LY+  +  G+  +   + ++ P  +S   +KA  ++        + P + L  ++GS++I
Sbjct: 247 LYAELKRAGVDYINFAHISAAPVKLSPKTVKAMAEIAEWNEEKAVSPVVGL--ETGSEKI 304

Query: 303 L-KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFI-------VGFPGETDDDFRATMDLV 354
             K M  +   + Y    D I  V     ++  +I       +G+P ETD D   ++ LV
Sbjct: 305 FNKYMKMKAFPWNYTNWKDLI--VESTAIMNESYIFPCYTMTIGYPEETDKDVEDSIKLV 362

Query: 355 DKI 357
           + I
Sbjct: 363 EYI 365


>gi|219852046|ref|YP_002466478.1| Radical SAM domain protein [Methanosphaerula palustris E1-9c]
 gi|219546305|gb|ACL16755.1| Radical SAM domain protein [Methanosphaerula palustris E1-9c]
          Length = 497

 Score = 44.3 bits (103), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 41/191 (21%), Positives = 85/191 (44%), Gaps = 25/191 (13%)

Query: 185 GCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK 244
           GC + C FC  P  + +   +S  Q++ +       G   I L  +++  + G  L  + 
Sbjct: 207 GCGRGCAFCT-PTLQSLR-HKSADQIIHDVTVNAHGGSKSIILHAEDMLCYGGTPLHPDP 264

Query: 245 CTFSDLLYSLSEIKGLVRLRYTT-------SHPR---DMSDCLIKAHGDLDVLMPYL--H 292
                L+    E++G+  + ++         HP    ++S+ L+         MPY+   
Sbjct: 265 ERLLPLVRRTGEVEGITNIGFSHIALATAYHHPHMVEELSEYLLTLPD-----MPYIGVQ 319

Query: 293 LPVQSGSDRILKSMNRRHTAY----EYRQIIDRIRSVRPD--IAISSDFIVGFPGETDDD 346
             +++GS +++    R   A     ++ +I+     +  D    I+   + G PGET+DD
Sbjct: 320 TGIETGSPQLIAMHMRGKPAPAPPEKWPEIVVEALGLLHDQNWVIAGTLVSGLPGETEDD 379

Query: 347 FRATMDLVDKI 357
            +A+++L+D+I
Sbjct: 380 VQASLELMDRI 390


>gi|91203722|emb|CAJ71375.1| hypothetical protein kustc0630 [Candidatus Kuenenia
           stuttgartiensis]
          Length = 514

 Score = 44.3 bits (103), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 78/323 (24%), Positives = 129/323 (39%), Gaps = 54/323 (16%)

Query: 172 RKRGVTAFLTIQEGCDKFCTFCVV-------------PYTRGIEISRSLSQVVDEARKLI 218
           R   V A +    GC   CTFC               P  R     R L+ V+DE R L 
Sbjct: 202 RLATVGAVIYTGRGCPFHCTFCAANSVWSANDKAPGNPVVR----KRPLAHVIDELRILQ 257

Query: 219 DNGVCEITLLGQNVNAWRGKG-LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDC- 276
           D    +   +  +    R K  +D  K       YS S +K L       +  +DM    
Sbjct: 258 DVYKFDFFYILDDTFGTREKDIIDFCKA------YSESGLKMLWAAETRVNCIKDMQIVK 311

Query: 277 LIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFI 336
           L+K  G +      L   V++GS R+LK++ ++    +  Q  D  R  +  I   ++ +
Sbjct: 312 LLKESGSIQ-----LDFGVETGSPRLLKAIKKQIVLEDTIQAFDLCR--KNGIRTFANML 364

Query: 337 VGFPGETDDDFRATMDLVDKI-------GYAQAFS-FKYSPRLGTPGSNMLEQVDENVKA 388
           V  PGE  +D   T  L+ +I       G  Q +   +    LG P SN      +  K 
Sbjct: 365 VNLPGEEAEDLNLTHKLLAEIKPTYTSVGVTQPYPGTEMYINLGKPISN-----KDYHKL 419

Query: 389 ERLLCLQK-KLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHN- 446
            RL+  ++ ++ + ++S  +      ++  IE   +       ++ WL+  ++NSKN   
Sbjct: 420 SRLIPPEEFRMSKHKISLRELLFTWQLKYKIEPFFERSLFKTDKTYWLR--IINSKNRWS 477

Query: 447 -----IGDIIKVRITDVKISTLY 464
                I +I+K+ +  VKI   Y
Sbjct: 478 YILFLIKEIVKMPLIHVKIRMRY 500


>gi|315930280|gb|EFV09386.1| miaB-like tRNA modifying enzyme domain protein [Campylobacter
           jejuni subsp. jejuni 305]
          Length = 167

 Score = 44.3 bits (103), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 31/122 (25%), Positives = 60/122 (49%), Gaps = 5/122 (4%)

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           S+++L+ M RR       ++ + I S     A+ +DFIV  PGE+++ ++  +    +  
Sbjct: 2   SEKMLRIMRRRSHTDNDLKLFNTIAS--KGYALGTDFIVAHPGESEEVWQEALKKFKEFP 59

Query: 359 YAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQI-IEVL 417
                +F +SPR  T  + M + ++  +  ERL  L+  + +    F      Q+ +EVL
Sbjct: 60  LTHIHAFIFSPRNNTHSATMKDVINGTLAKERLNTLKSIVEKNNYEFRKK--NQVSLEVL 117

Query: 418 IE 419
           +E
Sbjct: 118 VE 119


>gi|320010886|gb|ADW05736.1| oxygen-independent coproporphyrinogen III oxidase [Streptomyces
           flavogriseus ATCC 33331]
          Length = 413

 Score = 43.9 bits (102), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 30/116 (25%), Positives = 53/116 (45%), Gaps = 6/116 (5%)

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           +QS    +LK ++R HT       +   R+   D  ++ D I G PGE+DDD+RA++D  
Sbjct: 160 MQSARQHVLKVLDRTHTPGRPEACVAEARAAGFD-HVNLDLIYGTPGESDDDWRASLDAA 218

Query: 355 DKIGYAQAFSFKYSPRLGTPGSNMLEQ-----VDENVKAERLLCLQKKLREQQVSF 405
              G     ++      GT  +  + +      D++V A+R L   + +     S+
Sbjct: 219 IGAGPDHVSAYALIVEEGTQLARRIRRGEVPMTDDDVHADRYLIADEAMAAAGFSW 274


>gi|318076881|ref|ZP_07984213.1| bi-functional transferase/deacetylase [Streptomyces sp. SA3_actF]
          Length = 877

 Score = 43.9 bits (102), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 33/121 (27%), Positives = 54/121 (44%), Gaps = 6/121 (4%)

Query: 23  VPQRFFVK--SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKV 80
           +P+R  V   + GC  N  DS  +     + G++ V     AD+ V+NTC   E A +  
Sbjct: 1   MPERRTVALVTLGCARNEVDSEELAGRLEADGWDLVEDASHADVAVVNTCGFVEAAKKDS 60

Query: 81  YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140
              L    +LK      G    VV  GC+A+  G+++    P  + V+G   Y  + + L
Sbjct: 61  VDALLEANDLKG----HGRTQAVVAVGCMAERYGKDLAEALPEADGVLGFDDYADISDRL 116

Query: 141 E 141
           +
Sbjct: 117 Q 117


>gi|293394243|ref|ZP_06638543.1| radical SAM protein [Serratia odorifera DSM 4582]
 gi|291423221|gb|EFE96450.1| radical SAM protein [Serratia odorifera DSM 4582]
          Length = 309

 Score = 43.9 bits (102), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 43/92 (46%), Gaps = 12/92 (13%)

Query: 275 DCLIKAHGDLDVLMPY--------LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
           DC+ +A   LD+L  Y        L L +Q+  D+ LK +NR H    Y+Q   R R   
Sbjct: 120 DCVPEA--ALDLLAGYRAQGYEVWLELGLQTAHDKTLKRINRGHDFCCYQQTARRARER- 176

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
             + +    IVG PGET  D  AT+  V   G
Sbjct: 177 -GLKVCCHLIVGLPGETPADHLATLVAVVAAG 207


>gi|296120959|ref|YP_003628737.1| oxygen-independent coproporphyrinogen III oxidase [Planctomyces
           limnophilus DSM 3776]
 gi|296013299|gb|ADG66538.1| oxygen-independent coproporphyrinogen III oxidase [Planctomyces
           limnophilus DSM 3776]
          Length = 380

 Score = 43.9 bits (102), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 70/143 (48%), Gaps = 17/143 (11%)

Query: 268 SHPRDMSDCLIKAHGDLDVLMPY----LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           ++P DM++ +I      DVL       + L VQS  ++ L+++ R H   E  +I+ RIR
Sbjct: 100 ANPLDMTEEVI------DVLHSAGCNRVSLGVQSFQNKHLQTLERDHQGGEIPEIVQRIR 153

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN-----M 378
           +  P++++  D I G PG+T  D+   ++     G     ++  +   GT  +       
Sbjct: 154 ARIPNVSL--DLIFGVPGQTLVDWEYDLEQALACGPTHLSTYGLTFEEGTAFTTRKRRGQ 211

Query: 379 LEQVDENVKAERLLCLQKKLREQ 401
           L ++DE ++ E      K+L+E+
Sbjct: 212 LTEIDEALEREMYALAIKRLQEE 234


>gi|90413154|ref|ZP_01221150.1| putative Fe-S oxidoreductase [Photobacterium profundum 3TCK]
 gi|90325845|gb|EAS42297.1| putative Fe-S oxidoreductase [Photobacterium profundum 3TCK]
          Length = 314

 Score = 43.9 bits (102), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 2/69 (2%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +L L +Q+ +D+ LK +NR H    Y  I  R R++   I + +  IVG PG+T +D   
Sbjct: 141 WLELGLQTANDKTLKRINRGHDFACYENITKRARAM--GIKVCTHLIVGLPGDTKEDNLE 198

Query: 350 TMDLVDKIG 358
           T+     +G
Sbjct: 199 TLKRTIDVG 207


>gi|119873373|ref|YP_931380.1| radical SAM domain-containing protein [Pyrobaculum islandicum DSM
           4184]
 gi|119674781|gb|ABL89037.1| Radical SAM domain protein [Pyrobaculum islandicum DSM 4184]
          Length = 398

 Score = 43.9 bits (102), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 55/219 (25%), Positives = 91/219 (41%), Gaps = 27/219 (12%)

Query: 170 YNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLG 229
           Y++  G+   + I   C   C FC   + +G    R L  VV+ A+  +  G  EI  + 
Sbjct: 133 YSKSLGIYPPIEIMRSCAYRCAFCQT-WAQGPLRFRPLENVVELAKAYVSTGHREIRFIA 191

Query: 230 QNVNAWRGK--GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSH--PRDMSDCLIKAHGDLD 285
             V    G   G        + LL S+ E  G+  L    S   P  ++  ++KA     
Sbjct: 192 P-VGFLYGSSDGRTPNPDALASLLKSIRETGGVPYLGTFPSETRPETVTRDILKA----- 245

Query: 286 VLMPY-----LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV--RPDIAISSDFIVG 338
            + PY     +   +Q+ S+++LK   R H      + +    S+  +P +    D I G
Sbjct: 246 -IKPYVANRRISFGLQTASEKLLKLTKRGHDIATVEEAVKTAVSMGFKPVV----DVIGG 300

Query: 339 FPGETDDDFRATMDLVDKIGYAQAFSFK---YSPRLGTP 374
            PGE +DD   T+  ++K+  A   + +   Y P  GTP
Sbjct: 301 LPGEDEDDVVETVREMEKL-IAMGANIRMHYYIPLPGTP 338


>gi|198283886|ref|YP_002220207.1| hopanoid biosynthesis associated radical SAM protein HpnJ
           [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218667794|ref|YP_002426521.1| radical SAM domain protein [Acidithiobacillus ferrooxidans ATCC
           23270]
 gi|198248407|gb|ACH84000.1| hopanoid biosynthesis associated radical SAM protein HpnJ
           [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218520007|gb|ACK80593.1| radical SAM domain protein [Acidithiobacillus ferrooxidans ATCC
           23270]
          Length = 476

 Score = 43.9 bits (102), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 72/294 (24%), Positives = 113/294 (38%), Gaps = 62/294 (21%)

Query: 101 LLVVVAGCVAQAEGEEILRRSPI-VNVVVGPQTYYRLPELLE------------RARFGK 147
           LL+ + G     E EE L+++   V+ V   +  Y L E+ E            R+  G+
Sbjct: 100 LLIGMVGAKVAVEPEESLQQAAAAVDFVAREEFDYTLKEIAEGRPLSEVDGITYRSSNGQ 159

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNR------------KRGVTAFLTIQEGCDKFCTFCVV 195
            + + D ++ +  + L  V   Y R            K    +F T   GC   CTFC+ 
Sbjct: 160 IIHNPDRAMIEDMDALPFVSEVYKRDLHIEDYFIGYLKHPYISFYT-GRGCRSQCTFCLW 218

Query: 196 PYTRGIEI--SRSLSQVVDEARKLIDN--GVCEITLLGQNVNAWRGKGLDGEKCTFSDLL 251
           P T G     +RS + V++E R +  N   V EI          R +             
Sbjct: 219 PQTVGGHRYRTRSAASVIEEVRYIQKNFPQVKEIFFDDDTFTDDRPRA------------ 266

Query: 252 YSLSEI-KGLVRLRYTTSHPRDMSDCLIKAHGDLDVL-------MPYLHLPVQSGSDRIL 303
               EI +GL +L  T S       C  KA+   D L       +  L +  +SG  +IL
Sbjct: 267 ---EEIARGLGKLGVTWS-------CNAKANVPYDTLKVLHENGLRLLLVGYESGDQQIL 316

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
            ++ +       R+       +   I I   FI+G PGET +  + T+D   +I
Sbjct: 317 NNIKKGLKVEAARKFTADCHKL--GIVIHGTFILGLPGETKETIQKTIDFAKEI 368


>gi|197117287|ref|YP_002137714.1| cobalamin-binding radical SAM domain-containing iron-sulfur
           cluster-binding oxidoreductase [Geobacter bemidjiensis
           Bem]
 gi|197086647|gb|ACH37918.1| cobalamin-binding radical SAM domain iron-sulfur cluster-binding
           oxidoreductase with TPR domain [Geobacter bemidjiensis
           Bem]
          Length = 564

 Score = 43.9 bits (102), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 56/215 (26%), Positives = 90/215 (41%), Gaps = 36/215 (16%)

Query: 179 FLTIQEGCDKFCTFCVVP--YTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAW 235
           F+    GC   C FC  P  + RG+   RS   VV E R L +  G+   +       A 
Sbjct: 189 FVITSRGCPASCLFCSSPLFWGRGVRF-RSPESVVQEIRSLKERYGLIYFSFRDDTFTAN 247

Query: 236 RGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHG-DLDVLMPY---- 290
           RG+ L  E C                 LR    H   M +C  + +  D ++L+      
Sbjct: 248 RGRVL--EICRL---------------LRQERLH--VMWNCQSRVNAVDEEMLIAMKQAG 288

Query: 291 ---LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDF 347
              +   V+SGS ++LK++ +R    E  +    +R     I +S   I G PGE ++D 
Sbjct: 289 CECIQFGVESGSPQMLKALGKRILPPEVERAAAAVRRA--GINLSVYLITGIPGEGEEDL 346

Query: 348 RATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R T+ L++ I   +    + SP +  PG+ +L + 
Sbjct: 347 RQTVRLIESI---RPHDGQVSPLVYYPGTELLARA 378


>gi|83718703|ref|YP_442299.1| radical SAM domain-containing protein [Burkholderia thailandensis
           E264]
 gi|83652528|gb|ABC36591.1| radical SAM domain protein [Burkholderia thailandensis E264]
          Length = 503

 Score = 43.9 bits (102), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 55/211 (26%), Positives = 90/211 (42%), Gaps = 35/211 (16%)

Query: 185 GCDKFCTFCVVPYTRGIEISR--SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG 242
           GC   CTFC+ P T G    R  S+  V+ E + + DN + E+            K +  
Sbjct: 235 GCRSKCTFCLWPQTVGGHRYRVRSVESVLAEVKWIRDN-MPEV------------KEIMF 281

Query: 243 EKCTFSDLLYSLSEI-KGLVRLRYTTSHPRDMSDCLIKAHGDLDVL-------MPYLHLP 294
           +  TF+D    + EI +GL +L  T S       C  KA+     L       +  L + 
Sbjct: 282 DDDTFTDFKPRVEEIARGLGKLGVTWS-------CNAKANVPYSTLKIMKENGLRLLLVG 334

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
            +SG D+IL ++ +       R+  +  + +   I I   FI+G PGET +  + T++  
Sbjct: 335 YESGDDQILLNIKKGLRTDIARRFNEDCKKL--GIKIHGTFILGLPGETKETIKKTIEYA 392

Query: 355 DKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            +I      + + S     PG+ +  Q  EN
Sbjct: 393 KEI---NPHTIQVSLAAPYPGTRLYNQAIEN 420


>gi|17228289|ref|NP_484837.1| hypothetical protein all0794 [Nostoc sp. PCC 7120]
 gi|17130139|dbj|BAB72751.1| all0794 [Nostoc sp. PCC 7120]
          Length = 544

 Score = 43.9 bits (102), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 62/260 (23%), Positives = 112/260 (43%), Gaps = 37/260 (14%)

Query: 185 GCDKFCTFCVVPYT----RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL 240
            C + C FC+  Y     R   +  SL   +++  ++ +     + LLG +V        
Sbjct: 233 SCPEMCRFCMASYLTLPFRTASLEGSLIPAIEKGLQVTNR----LGLLGASVT------- 281

Query: 241 DGEKCTFSDLLYSLSEIKGL-VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
             +   F  LL  +S+ K   VRL   +     +++ L K     D     L + V+SGS
Sbjct: 282 --QHPEFETLLDYISQPKYEDVRLSIASVRTNTVTEQLAKTLAKRDTRS--LTIAVESGS 337

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPD--IAISSDFIVGFPGETDDDFRATMDLVDKI 357
           +++ + +N++       +II    + +     A+    +VG PGET +D  AT+ ++  I
Sbjct: 338 EKVRQIINKK---LHNDEIIQAAINAKAGGLTALKLYGMVGLPGETPEDLDATVAMMRSI 394

Query: 358 GYAQA------FSFKYSPRLGTPGSNMLEQVDENVKAE-RLLCLQKKLREQQVSFN-DAC 409
             A            + P+  TP     +    N +AE RL  LQK+L+ Q + F  ++ 
Sbjct: 395 KKAAPGLRLTLGCSTFVPKAHTP----FQWYGVNKQAEKRLQSLQKQLKPQGIDFRPESY 450

Query: 410 VGQIIEVLIEKHGKEKGKLV 429
              II+ LI +  +   +L+
Sbjct: 451 NWSIIQALISRGDRRISQLL 470


>gi|288927608|ref|ZP_06421455.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Prevotella sp. oral taxon 317 str. F0108]
 gi|288330442|gb|EFC69026.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Prevotella sp. oral taxon 317 str. F0108]
          Length = 384

 Score = 43.9 bits (102), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 52/100 (52%), Gaps = 10/100 (10%)

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           VQ+ SD  L  + RRH A +    I+R+R V  +  IS D I GFP +T D++   +   
Sbjct: 131 VQTFSDERLTFLRRRHKATDIAPAIERLRQVGIN-NISIDLIFGFPKQTLDEWAIDLQNA 189

Query: 355 DKIG--YAQAFSFKYSPRLGTPGSNMLEQ-----VDENVK 387
            ++G  +  A+S  Y    GTP   +L+Q     +D+N+ 
Sbjct: 190 IELGVEHISAYSLMYEE--GTPLFRLLQQQRVSEIDDNLS 227


>gi|29832109|ref|NP_826743.1| coproporphyrinogen III oxidase [Streptomyces avermitilis MA-4680]
 gi|29609227|dbj|BAC73278.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Streptomyces avermitilis MA-4680]
          Length = 410

 Score = 43.9 bits (102), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 52/109 (47%), Gaps = 6/109 (5%)

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           +QS    +LK ++R HT     + +   R+   D  ++ D I G PGETDDD+RA++D  
Sbjct: 157 MQSARQHVLKVLDRTHTPGRPERCVAEARAAGFD-HVNLDLIYGTPGETDDDWRASLDAA 215

Query: 355 DKIGYAQAFSFKYSPRLGTPGSNMLEQ-----VDENVKAERLLCLQKKL 398
              G     ++      GT  +  + +      D++V A+R L   + L
Sbjct: 216 LGAGPDHISAYALIVEEGTQLARRIRRGEVPMTDDDVHADRYLIADEIL 264


>gi|124384313|ref|YP_001028798.1| radical SAM domain-containing protein [Burkholderia mallei NCTC
           10229]
 gi|126441620|ref|YP_001059761.1| radical SAM domain-containing protein [Burkholderia pseudomallei
           668]
 gi|126452682|ref|YP_001067047.1| radical SAM domain-containing protein [Burkholderia pseudomallei
           1106a]
 gi|134277795|ref|ZP_01764510.1| radical SAM domain protein [Burkholderia pseudomallei 305]
 gi|167720509|ref|ZP_02403745.1| radical SAM domain protein [Burkholderia pseudomallei DM98]
 gi|167739502|ref|ZP_02412276.1| radical SAM domain protein [Burkholderia pseudomallei 14]
 gi|167903583|ref|ZP_02490788.1| radical SAM domain protein [Burkholderia pseudomallei NCTC 13177]
 gi|167911830|ref|ZP_02498921.1| radical SAM domain protein [Burkholderia pseudomallei 112]
 gi|167919830|ref|ZP_02506921.1| radical SAM domain protein [Burkholderia pseudomallei BCC215]
 gi|217420930|ref|ZP_03452435.1| radical SAM domain protein [Burkholderia pseudomallei 576]
 gi|226199995|ref|ZP_03795545.1| radical SAM domain protein [Burkholderia pseudomallei Pakistan 9]
 gi|237813155|ref|YP_002897606.1| hopanoid biosynthesis associated radical SAM protein HpnJ
           [Burkholderia pseudomallei MSHR346]
 gi|242314748|ref|ZP_04813764.1| radical SAM domain protein [Burkholderia pseudomallei 1106b]
 gi|254178281|ref|ZP_04884936.1| radical SAM domain protein [Burkholderia mallei ATCC 10399]
 gi|254184244|ref|ZP_04890834.1| radical SAM domain protein [Burkholderia pseudomallei 1655]
 gi|254195761|ref|ZP_04902187.1| radical SAM domain protein [Burkholderia pseudomallei S13]
 gi|254199264|ref|ZP_04905630.1| radical SAM domain protein [Burkholderia mallei FMH]
 gi|254205573|ref|ZP_04911925.1| radical SAM domain protein [Burkholderia mallei JHU]
 gi|254260638|ref|ZP_04951692.1| radical SAM domain protein [Burkholderia pseudomallei 1710a]
 gi|254296905|ref|ZP_04964358.1| radical SAM domain protein [Burkholderia pseudomallei 406e]
 gi|254357738|ref|ZP_04974011.1| radical SAM domain protein [Burkholderia mallei 2002721280]
 gi|126221113|gb|ABN84619.1| radical SAM domain protein [Burkholderia pseudomallei 668]
 gi|126226324|gb|ABN89864.1| radical SAM domain protein [Burkholderia pseudomallei 1106a]
 gi|134251445|gb|EBA51524.1| radical SAM domain protein [Burkholderia pseudomallei 305]
 gi|147748860|gb|EDK55934.1| radical SAM domain protein [Burkholderia mallei FMH]
 gi|147753016|gb|EDK60081.1| radical SAM domain protein [Burkholderia mallei JHU]
 gi|148026865|gb|EDK84886.1| radical SAM domain protein [Burkholderia mallei 2002721280]
 gi|157807494|gb|EDO84664.1| radical SAM domain protein [Burkholderia pseudomallei 406e]
 gi|160699320|gb|EDP89290.1| radical SAM domain protein [Burkholderia mallei ATCC 10399]
 gi|169652506|gb|EDS85199.1| radical SAM domain protein [Burkholderia pseudomallei S13]
 gi|184214775|gb|EDU11818.1| radical SAM domain protein [Burkholderia pseudomallei 1655]
 gi|217396342|gb|EEC36359.1| radical SAM domain protein [Burkholderia pseudomallei 576]
 gi|225928051|gb|EEH24088.1| radical SAM domain protein [Burkholderia pseudomallei Pakistan 9]
 gi|237503756|gb|ACQ96074.1| hopanoid biosynthesis associated radical SAM protein HpnJ
           [Burkholderia pseudomallei MSHR346]
 gi|242137987|gb|EES24389.1| radical SAM domain protein [Burkholderia pseudomallei 1106b]
 gi|254219327|gb|EET08711.1| radical SAM domain protein [Burkholderia pseudomallei 1710a]
          Length = 481

 Score = 43.9 bits (102), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 55/211 (26%), Positives = 90/211 (42%), Gaps = 35/211 (16%)

Query: 185 GCDKFCTFCVVPYTRGIEISR--SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG 242
           GC   CTFC+ P T G    R  S+  V+ E + + DN + E+            K +  
Sbjct: 213 GCRSKCTFCLWPQTVGGHRYRVRSVESVLAEVKWIRDN-MPEV------------KEIMF 259

Query: 243 EKCTFSDLLYSLSEI-KGLVRLRYTTSHPRDMSDCLIKAHGDLDVL-------MPYLHLP 294
           +  TF+D    + EI +GL +L  T S       C  KA+     L       +  L + 
Sbjct: 260 DDDTFTDFKPRVEEIARGLGKLGVTWS-------CNAKANVPYSTLKIMKENGLRLLLVG 312

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
            +SG D+IL ++ +       R+  +  + +   I I   FI+G PGET +  + T++  
Sbjct: 313 YESGDDQILLNIKKGLRTDIARRFNEDCKKL--GIKIHGTFILGLPGETKETIKKTIEYA 370

Query: 355 DKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            +I      + + S     PG+ +  Q  EN
Sbjct: 371 KEI---NPHTIQVSLAAPYPGTRLYNQAIEN 398


>gi|116750548|ref|YP_847235.1| radical SAM domain-containing protein [Syntrophobacter fumaroxidans
           MPOB]
 gi|116699612|gb|ABK18800.1| Radical SAM domain protein [Syntrophobacter fumaroxidans MPOB]
          Length = 475

 Score = 43.9 bits (102), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 71/297 (23%), Positives = 113/297 (38%), Gaps = 60/297 (20%)

Query: 96  KEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR---------LPELLERARF- 145
           K   D+ +   G       EE LR SP ++ VV  +  +          LP++L  +   
Sbjct: 93  KSHPDVRIAFVGPPVSVHPEESLRASPAIDFVVRKEFDHAVTEFAQGKPLPDILGVSYLE 152

Query: 146 -GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT------------AFLTIQEGCDKFCTF 192
            G  V   D  V    + L  V   Y R   +T            AF T   GC   CT+
Sbjct: 153 NGHIVHTPDRPVFTDLDSLPSVVDVYKRDLDITRYNVPFLLHPFIAFYT-GRGCPARCTY 211

Query: 193 CVVP-----YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTF 247
           C+ P     +T     + S++  V  A +L  N + EI     +  +W       +K   
Sbjct: 212 CLWPQTFSGHTYRPRAAESVASDVKRAFELFPN-LKEI-FFDDDTFSW-------DKTRV 262

Query: 248 SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY-------LHLPVQSGSD 300
            DL   L        L +T S       C  + + D ++L          L +  +SG  
Sbjct: 263 LDLCAKLKP------LGFTWS-------CTCRVNADHEMLKAMRDAGCRLLIVGFESGDS 309

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
            ILK++ +  T       +   RS+   +A+  DFI+G PGET +  + TM   +++
Sbjct: 310 GILKNVKKGATPELAMSFMKTARSL--GLAVHGDFIIGLPGETRETIKTTMRFAEEL 364


>gi|305662909|ref|YP_003859197.1| Radical SAM domain protein [Ignisphaera aggregans DSM 17230]
 gi|304377478|gb|ADM27317.1| Radical SAM domain protein [Ignisphaera aggregans DSM 17230]
          Length = 523

 Score = 43.9 bits (102), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 53/219 (24%), Positives = 96/219 (43%), Gaps = 35/219 (15%)

Query: 160 FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY--TRGIEISRSLSQV-VDEARK 216
            E++ I+ G       V   + I  GC + C FC V     R + I R L ++ V+    
Sbjct: 208 IEKIPIIKGA-----SVNGLIEITRGCPRGCKFCSVTLRPLRHMPIERILKEIDVN---- 258

Query: 217 LIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE--IKGLVRLRYTTS------ 268
            I NGV    L  ++V  +   G++      +D +  L E  +K +  L +  +      
Sbjct: 259 -ISNGVKGAVLHSEDVLLYGAHGVEPN----ADAVLKLHEAVVKKIESLAWAHASLAAIV 313

Query: 269 ----HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS-MNRRHTAY---EYRQIID 320
                 R +S      + +LD     + + +++GS R+ K  M  +   +   E+  I++
Sbjct: 314 VSQRKYRLISRVTETIYSNLDQNYLGVEVGIETGSPRLAKIIMPAKALPFRVEEWPDIVE 373

Query: 321 RIRSVRPD--IAISSDFIVGFPGETDDDFRATMDLVDKI 357
              S+  D  I  ++ FI+G PGE  DD   T++L+D++
Sbjct: 374 EAFSIMHDHRIIPAATFILGLPGEEPDDVVKTIELLDRL 412


>gi|118444758|ref|YP_878569.1| coproporphyrinogen III oxidase [Clostridium novyi NT]
 gi|118135214|gb|ABK62258.1| oxygen-independent coproporphyrinogen III oxidase, putative
           [Clostridium novyi NT]
          Length = 375

 Score = 43.9 bits (102), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 50/212 (23%), Positives = 91/212 (42%), Gaps = 19/212 (8%)

Query: 186 CDKFCTFCVVPYTRG-----IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL 240
           C + C +C      G     +E S++LS+ +D  +    N       +G     +    L
Sbjct: 14  CKQKCLYCDFTSYCGREDTMVEYSKALSKEIDNVK----NKKISTIFIGGGTPTYLC--L 67

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTT-SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
            G    ++ L  S+ ++     L +T  S+P+   +  +K    + V    L + +QS  
Sbjct: 68  QG----WNILKQSIDKLSKTSNLEFTVESNPKTFDEEKLKFLKSIGV--NRLSIGLQSWQ 121

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
           D+ LKS+ R HT  E+ +     R++     I+ D + G P +T DD++ T+D V K+  
Sbjct: 122 DKHLKSLGRIHTKDEFLKSYHMARNMGFK-NINVDLMFGIPNQTLDDWKETLDEVTKLNP 180

Query: 360 AQAFSFKYSPRLGTPGSNMLEQVDENVKAERL 391
                +      GTP  +  E+    + +E L
Sbjct: 181 EHLSCYSLIIEEGTPFYDFYEKNKIELPSEEL 212


>gi|260773474|ref|ZP_05882390.1| hypothetical protein VIB_001944 [Vibrio metschnikovii CIP 69.14]
 gi|260612613|gb|EEX37816.1| hypothetical protein VIB_001944 [Vibrio metschnikovii CIP 69.14]
          Length = 313

 Score = 43.5 bits (101), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 2/69 (2%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +L L +Q+ ++  LK +NR H    Y+ I  R R++   I I +  IVG P ET  D  A
Sbjct: 141 WLELGLQTANNSTLKRINRGHDFDCYQSIAQRARAL--GIKICTHLIVGLPKETASDNVA 198

Query: 350 TMDLVDKIG 358
           T+  V ++G
Sbjct: 199 TLQQVVEVG 207


>gi|196232764|ref|ZP_03131615.1| hopanoid biosynthesis associated radical SAM protein HpnJ
           [Chthoniobacter flavus Ellin428]
 gi|196223224|gb|EDY17743.1| hopanoid biosynthesis associated radical SAM protein HpnJ
           [Chthoniobacter flavus Ellin428]
          Length = 476

 Score = 43.5 bits (101), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 54/209 (25%), Positives = 83/209 (39%), Gaps = 31/209 (14%)

Query: 185 GCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK 244
           GC   CTFC+ P T G    R+ S            GV       Q +   + K    + 
Sbjct: 208 GCPAQCTFCLWPQTVGGHKYRAKSPA----------GVAREMAHAQRLFP-QVKEFFFDD 256

Query: 245 CTFSDLLYSLSEI-KGLVRLRYTTSHPRDMSDCLIKAHGDLDVL-------MPYLHLPVQ 296
            TF+       EI + L +L  T S       C  +A+ + + L       +  L +  +
Sbjct: 257 DTFTAYQPRAREIARELGKLGMTWS-------CNARANVNYETLKTMRDNGLRLLLVGYE 309

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
           SG  RIL ++ +     E R+  +  R +   I I   FI+G PGET +  R T++    
Sbjct: 310 SGVQRILDNIKKGIRIEEAREFTENCRKL--GITIHGTFILGLPGETPETIRETIEYAKS 367

Query: 357 IGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
           +     FS + S     PG+ +  Q  EN
Sbjct: 368 L---DVFSIQVSLAAPYPGTELYRQAREN 393


>gi|167619276|ref|ZP_02387907.1| radical SAM domain protein [Burkholderia thailandensis Bt4]
          Length = 481

 Score = 43.5 bits (101), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 55/211 (26%), Positives = 90/211 (42%), Gaps = 35/211 (16%)

Query: 185 GCDKFCTFCVVPYTRGIEISR--SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG 242
           GC   CTFC+ P T G    R  S+  V+ E + + DN + E+            K +  
Sbjct: 213 GCRSKCTFCLWPQTVGGHRYRVRSVESVLAEVKWIRDN-MPEV------------KEIMF 259

Query: 243 EKCTFSDLLYSLSEI-KGLVRLRYTTSHPRDMSDCLIKAHGDLDVL-------MPYLHLP 294
           +  TF+D    + EI +GL +L  T S       C  KA+     L       +  L + 
Sbjct: 260 DDDTFTDFKPRVEEIARGLGKLGVTWS-------CNAKANVPYSTLKIMKENGLRLLLVG 312

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
            +SG D+IL ++ +       R+  +  + +   I I   FI+G PGET +  + T++  
Sbjct: 313 YESGDDQILLNIKKGLRTDIARRFNEDCKKL--GIKIHGTFILGLPGETKETIKKTIEYA 370

Query: 355 DKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            +I      + + S     PG+ +  Q  EN
Sbjct: 371 KEI---NPHTIQVSLAAPYPGTRLYNQAIEN 398


>gi|262039680|ref|ZP_06012969.1| oxygen-independent coproporphyrinogen III oxidase 2 [Leptotrichia
           goodfellowii F0264]
 gi|261746297|gb|EEY33847.1| oxygen-independent coproporphyrinogen III oxidase 2 [Leptotrichia
           goodfellowii F0264]
          Length = 481

 Score = 43.5 bits (101), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 2/61 (3%)

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
           QS ++R LK +NR H   ++  I D  +  R  + I+ D I+G PGET +D   T+D V 
Sbjct: 276 QSFNERTLKLVNRYHNRKQFDSIYDIAK--RIGLEINMDLILGLPGETTEDILYTLDEVK 333

Query: 356 K 356
           K
Sbjct: 334 K 334


>gi|167581190|ref|ZP_02374064.1| radical SAM domain protein [Burkholderia thailandensis TXDOH]
 gi|257138494|ref|ZP_05586756.1| radical SAM domain-containing protein [Burkholderia thailandensis
           E264]
          Length = 473

 Score = 43.5 bits (101), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 55/211 (26%), Positives = 90/211 (42%), Gaps = 35/211 (16%)

Query: 185 GCDKFCTFCVVPYTRGIEISR--SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG 242
           GC   CTFC+ P T G    R  S+  V+ E + + DN + E+            K +  
Sbjct: 205 GCRSKCTFCLWPQTVGGHRYRVRSVESVLAEVKWIRDN-MPEV------------KEIMF 251

Query: 243 EKCTFSDLLYSLSEI-KGLVRLRYTTSHPRDMSDCLIKAHGDLDVL-------MPYLHLP 294
           +  TF+D    + EI +GL +L  T S       C  KA+     L       +  L + 
Sbjct: 252 DDDTFTDFKPRVEEIARGLGKLGVTWS-------CNAKANVPYSTLKIMKENGLRLLLVG 304

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
            +SG D+IL ++ +       R+  +  + +   I I   FI+G PGET +  + T++  
Sbjct: 305 YESGDDQILLNIKKGLRTDIARRFNEDCKKL--GIKIHGTFILGLPGETKETIKKTIEYA 362

Query: 355 DKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            +I      + + S     PG+ +  Q  EN
Sbjct: 363 KEI---NPHTIQVSLAAPYPGTRLYNQAIEN 390


>gi|295676688|ref|YP_003605212.1| hopanoid biosynthesis associated radical SAM protein HpnJ
           [Burkholderia sp. CCGE1002]
 gi|295436531|gb|ADG15701.1| hopanoid biosynthesis associated radical SAM protein HpnJ
           [Burkholderia sp. CCGE1002]
          Length = 473

 Score = 43.5 bits (101), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 53/211 (25%), Positives = 90/211 (42%), Gaps = 35/211 (16%)

Query: 185 GCDKFCTFCVVPYTRGIEISR--SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG 242
           GC   CTFC+ P T G    R  S+  V++E + + DN + E+            K +  
Sbjct: 205 GCRSKCTFCLWPQTVGGHRYRVRSVENVLEEVKWIRDN-MPEV------------KEIMF 251

Query: 243 EKCTFSDLLYSLSEI-KGLVRLRYTTSHPRDMSDCLIKAHGDLDVL-------MPYLHLP 294
           +  TF+D      EI +G+ +L  T S       C  KA+     L       +  L + 
Sbjct: 252 DDDTFTDFKPRAEEIARGMGKLGVTWS-------CNAKANVPYSTLKIMKENGLRLLLVG 304

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
            +SG D+IL ++ +       R+     R++   I +   FI+G PGET +  + T++  
Sbjct: 305 YESGDDQILLNVKKGLRTDIARRFAQDCRTL--GIKVHGTFIIGLPGETQETIQKTIEYA 362

Query: 355 DKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            +I      + + S     PG+ +  Q  E+
Sbjct: 363 KEI---NPLTIQVSLAAPYPGTRLYNQAVES 390


>gi|161669194|gb|ABX75449.1| cdk5 regulatory subunit associated protein 1 [Lycosa singoriensis]
          Length = 134

 Score = 43.5 bits (101), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 2/65 (3%)

Query: 16  QIVDQCIVP--QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIR 73
           +IV   I+P  Q+ +VK++GC  N  DS  M  +    GY   +    AD+ +LN+C ++
Sbjct: 48  EIVADSIIPGTQKVYVKTWGCAHNSSDSEYMAGLLNESGYIITDDSATADVWLLNSCTVK 107

Query: 74  EKAAE 78
             A +
Sbjct: 108 NPAED 112


>gi|317152418|ref|YP_004120466.1| Radical SAM domain-containing protein [Desulfovibrio aespoeensis
           Aspo-2]
 gi|316942669|gb|ADU61720.1| Radical SAM domain protein [Desulfovibrio aespoeensis Aspo-2]
          Length = 484

 Score = 43.5 bits (101), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 51/208 (24%), Positives = 85/208 (40%), Gaps = 21/208 (10%)

Query: 179 FLTIQ--EGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDNGVCEITLLGQNVNAW 235
           + TIQ   GC   C FC  P   G  I  RS   V+ E  ++   G  E+    +   A+
Sbjct: 208 YTTIQTSRGCPGKCIFCTAPEFYGKRIRCRSTDNVLKELHEIKSLGYREVFFRDETFTAY 267

Query: 236 RGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDC-LIKAHGDLDVLMPYLHLP 294
           + + +  E C           +K  + L +  +   D+ D   + A       M  +   
Sbjct: 268 KKRNI--EICA--------RMVKDSLDLSWIANGRVDLVDSEALAAMKKAGCHM--IKFG 315

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           V++GSD IL+   +  TA + RQ     + V  D    +  +VG PGE++     T++ V
Sbjct: 316 VETGSDEILRRYKKGTTAEQARQAFRYAKEVGLDT--HAHLVVGGPGESEATLAHTIEFV 373

Query: 355 DKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
            ++    A     +P  GT    + E+V
Sbjct: 374 KELDPTTASFGILTPYAGT---ELFEEV 398


>gi|114048443|ref|YP_738993.1| putative radical SAM protein [Shewanella sp. MR-7]
 gi|113889885|gb|ABI43936.1| conserved hypothetical radical SAM protein [Shewanella sp. MR-7]
          Length = 309

 Score = 43.5 bits (101), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 55/125 (44%), Gaps = 16/125 (12%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +L L +Q+ +D+ L  +NR H    Y   + R RS    + + +  I+G PGET  D+ A
Sbjct: 147 WLELGLQTANDKTLHKINRGHDFACYCNTVARARS--RGLKVCTHLILGLPGETHLDYMA 204

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDAC 409
           T+  V   G       K  P     GS M +      +A RL  L        +    AC
Sbjct: 205 TLQAVLAQGVD---GLKLHPLHVVEGSTMAKA----WRAGRLPLL-------SIEEYAAC 250

Query: 410 VGQII 414
           VG+++
Sbjct: 251 VGELV 255


>gi|260642797|ref|ZP_05417345.2| putative oxygen-independent coproporphyrinogen III oxidase
           [Bacteroides finegoldii DSM 17565]
 gi|260620486|gb|EEX43357.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Bacteroides finegoldii DSM 17565]
          Length = 335

 Score = 43.5 bits (101), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 50/170 (29%), Positives = 75/170 (44%), Gaps = 22/170 (12%)

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTT--SHPRDMSDCLIKAHGDLDVLMPY--LHLPVQSG 298
           EK  F  +  ++ E  GL   +  T  ++P D+S   ++    L    P+  L + +Q+ 
Sbjct: 25  EKEDFEQIFDTIREHYGLNHCQEITLEANPDDLSQEYLEMLSSL----PFNRLSMGIQTF 80

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGET----DDDFRATMDLV 354
            D  LK + RRH A    + IDR R       IS D I G P ET    ++D R  + L 
Sbjct: 81  DDATLKLLRRRHNARTAIEAIDRCRKAGFQ-NISIDLIYGLPEETKERWENDLRQAISL- 138

Query: 355 DKIGYAQAFSFKYSPRLGTPGSNMLEQ-----VDENVKAERLLCLQKKLR 399
             + +  A+   Y     TP  NML+Q     VDE+   E    L + L+
Sbjct: 139 -NVEHISAYHLIYEE--DTPIYNMLKQHQISEVDEDSSLEFFTLLIEHLQ 185


>gi|220929756|ref|YP_002506665.1| radical SAM protein [Clostridium cellulolyticum H10]
 gi|220000084|gb|ACL76685.1| Radical SAM domain protein [Clostridium cellulolyticum H10]
          Length = 426

 Score = 43.5 bits (101), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 87/372 (23%), Positives = 146/372 (39%), Gaps = 58/372 (15%)

Query: 28  FVKSYGCQMNVYD-SLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           +VKS G  + V D S  +ED         ++ +++A++  + T       A+K+   LG 
Sbjct: 34  YVKSKGFDIKVCDLSGVLEDNL-------IDYIEEAEIYGIGTYSATYGIAQKL---LGE 83

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           IR      I       VV  G  A A  EE+ R   +V    G   +Y L + ++     
Sbjct: 84  IREKYPKSI-------VVAGGPHASALSEEVARDFDVVICGEGEYVFYDLIKKVKEGLMP 136

Query: 147 KRVVDTDYSVEDKFERLSIVDGGY-----NRKRGVTAFLTI----QEGCDKFCTFCVVPY 197
           +R+++ +  V    + L   D GY        R +     I      GC+  C FC    
Sbjct: 137 ERIIEAE--VIKNLDDLPFPDYGYFCNMSKYTRRIDNMPVICLDSSRGCNFTCRFCNSNV 194

Query: 198 T-RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256
           + RG   +RS   V++E R   D G         N  A      D ++      L     
Sbjct: 195 SKRGYWRARSPESVIEEVRMHYDKGWRAFRFNDDNFLA------DPKRAMKICQLIKPLN 248

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           IK  +  R   S   D+   L      LD    ++ + ++S S  +L  M +  +     
Sbjct: 249 IKWRIFAR-AESLSLDICRTL------LDSGCTHISVGIESLSASMLSKMGKATS----- 296

Query: 317 QIIDRIR-----SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
             I+RI+     +    I     FIVGFPGE+++    T+  ++ +   +A  +   P L
Sbjct: 297 --IERIKWGLNNAFEAGIRTRGFFIVGFPGESNETISETIKSLEDLKLGEATVY---PCL 351

Query: 372 GTPGSNMLEQVD 383
             PG+++  + D
Sbjct: 352 PYPGTDLYSRPD 363


>gi|53720004|ref|YP_108990.1| hypothetical protein BPSL2398 [Burkholderia pseudomallei K96243]
 gi|53725303|ref|YP_102369.1| radical SAM domain-containing protein [Burkholderia mallei ATCC
           23344]
 gi|67641777|ref|ZP_00440544.1| hopanoid biosynthesis associated radical SAM protein HpnJ
           [Burkholderia mallei GB8 horse 4]
 gi|76811229|ref|YP_334243.1| Fe-S oxidoreductase [Burkholderia pseudomallei 1710b]
 gi|167001080|ref|ZP_02266881.1| hopanoid biosynthesis associated radical SAM protein HpnJ
           [Burkholderia mallei PRL-20]
 gi|167816706|ref|ZP_02448386.1| radical SAM domain protein [Burkholderia pseudomallei 91]
 gi|167825111|ref|ZP_02456582.1| radical SAM domain protein [Burkholderia pseudomallei 9]
 gi|167846614|ref|ZP_02472122.1| radical SAM domain protein [Burkholderia pseudomallei B7210]
 gi|167895197|ref|ZP_02482599.1| radical SAM domain protein [Burkholderia pseudomallei 7894]
 gi|254191281|ref|ZP_04897785.1| radical SAM domain protein [Burkholderia pseudomallei Pasteur
           52237]
 gi|262193273|ref|YP_001081291.2| radical SAM domain-containing protein [Burkholderia mallei NCTC
           10247]
 gi|52210418|emb|CAH36400.1| conserved hypothetical protein [Burkholderia pseudomallei K96243]
 gi|52428726|gb|AAU49319.1| radical SAM domain protein [Burkholderia mallei ATCC 23344]
 gi|76580682|gb|ABA50157.1| Fe-S oxidoreductase [Burkholderia pseudomallei 1710b]
 gi|157938953|gb|EDO94623.1| radical SAM domain protein [Burkholderia pseudomallei Pasteur
           52237]
 gi|238522759|gb|EEP86201.1| hopanoid biosynthesis associated radical SAM protein HpnJ
           [Burkholderia mallei GB8 horse 4]
 gi|243063034|gb|EES45220.1| hopanoid biosynthesis associated radical SAM protein HpnJ
           [Burkholderia mallei PRL-20]
 gi|261825981|gb|ABN01602.2| hopanoid biosynthesis associated radical SAM protein HpnJ
           [Burkholderia mallei NCTC 10229]
 gi|261835079|gb|ABO06508.2| hopanoid biosynthesis associated radical SAM protein HpnJ
           [Burkholderia mallei NCTC 10247]
          Length = 473

 Score = 43.5 bits (101), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 55/211 (26%), Positives = 90/211 (42%), Gaps = 35/211 (16%)

Query: 185 GCDKFCTFCVVPYTRGIEISR--SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG 242
           GC   CTFC+ P T G    R  S+  V+ E + + DN + E+            K +  
Sbjct: 205 GCRSKCTFCLWPQTVGGHRYRVRSVESVLAEVKWIRDN-MPEV------------KEIMF 251

Query: 243 EKCTFSDLLYSLSEI-KGLVRLRYTTSHPRDMSDCLIKAHGDLDVL-------MPYLHLP 294
           +  TF+D    + EI +GL +L  T S       C  KA+     L       +  L + 
Sbjct: 252 DDDTFTDFKPRVEEIARGLGKLGVTWS-------CNAKANVPYSTLKIMKENGLRLLLVG 304

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
            +SG D+IL ++ +       R+  +  + +   I I   FI+G PGET +  + T++  
Sbjct: 305 YESGDDQILLNIKKGLRTDIARRFNEDCKKL--GIKIHGTFILGLPGETKETIKKTIEYA 362

Query: 355 DKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            +I      + + S     PG+ +  Q  EN
Sbjct: 363 KEI---NPHTIQVSLAAPYPGTRLYNQAIEN 390


>gi|322418142|ref|YP_004197365.1| Radical SAM domain-containing protein [Geobacter sp. M18]
 gi|320124529|gb|ADW12089.1| Radical SAM domain protein [Geobacter sp. M18]
          Length = 488

 Score = 43.5 bits (101), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 87/181 (48%), Gaps = 13/181 (7%)

Query: 174 RGVTAFLTIQEGCDKFCTFCVV-PYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQN 231
           RG  A +    GCD  C FC    + R     R   +VV+E + LID+ GV   TL    
Sbjct: 199 RGRMASILTSRGCDMECAFCSQRMFWREDWRCRKPEKVVEEMQHLIDSYGVNFFTL---- 254

Query: 232 VNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL 291
           ++A+  K  +  +  F DL+  + +  G+  L  T        + ++  + +  ++  ++
Sbjct: 255 IDAYPTKHRERWEL-FLDLV--IEKKLGVYLLIETRVEDIIRDEDILHKYREAGII--HV 309

Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351
           +L  +S    IL S+N+  +  + ++ +D +R  R  I   + F++GFP ET +  + T+
Sbjct: 310 YLGAESADKDILGSLNKGTSFEQNKRALDLLREAR--IITEASFMIGFPTETWESIQNTI 367

Query: 352 D 352
           D
Sbjct: 368 D 368


>gi|312602556|ref|YP_004022401.1| radical SAM superfamily protein [Burkholderia rhizoxinica HKI 454]
 gi|312169870|emb|CBW76882.1| Radical SAM superfamily [Burkholderia rhizoxinica HKI 454]
          Length = 473

 Score = 43.5 bits (101), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 55/211 (26%), Positives = 90/211 (42%), Gaps = 35/211 (16%)

Query: 185 GCDKFCTFCVVPYTRGIEIS--RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG 242
           GC   CTFC+ P T G      RS+  V++E + + DN + E+            K +  
Sbjct: 205 GCRSRCTFCLWPQTVGGHRYRVRSVENVLEEVKWIRDN-MPEV------------KEIMF 251

Query: 243 EKCTFSDLLYSLSEI-KGLVRLRYTTSHPRDMSDCLIKAHGDLDVL-------MPYLHLP 294
           +  TF+D    +  I +GL +L  T S       C  KA+     L       +  L + 
Sbjct: 252 DDDTFTDFKPRVEAIARGLGKLGVTWS-------CNAKANVPYSTLKIMKENGLRLLLVG 304

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
            +SG D+IL ++ +       R+  +  R +   I I   FI+G PGET +  + T+   
Sbjct: 305 YESGDDQILLNIKKGLRTDIARRFSEDCRKL--GIKIHGTFILGLPGETRETIQKTIAYA 362

Query: 355 DKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            +I      + + S     PG+ + +Q  EN
Sbjct: 363 KEI---NPHTIQVSLAAPYPGTTLYKQAVEN 390


>gi|254285969|ref|ZP_04960930.1| conserved hypothetical protein [Vibrio cholerae AM-19226]
 gi|150423879|gb|EDN15819.1| conserved hypothetical protein [Vibrio cholerae AM-19226]
          Length = 316

 Score = 43.5 bits (101), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 2/69 (2%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +L L +Q+  D+ LK +NR H    Y +I  + R++   I + +  IVG PGE   +   
Sbjct: 145 WLELGLQTAHDQTLKRINRGHNFACYAEITAKARAL--GIKVCTHLIVGLPGEGRTENLT 202

Query: 350 TMDLVDKIG 358
           T+  V K+G
Sbjct: 203 TLQQVLKVG 211


>gi|312621841|ref|YP_004023454.1| Radical SAM domain-containing protein [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312202308|gb|ADQ45635.1| Radical SAM domain protein [Caldicellulosiruptor kronotskyensis
           2002]
          Length = 471

 Score = 43.5 bits (101), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 43/192 (22%), Positives = 90/192 (46%), Gaps = 23/192 (11%)

Query: 190 CTFCVVPY--TRGIEISRSLSQVVDEARKLI----DNGVCEITLLGQNVNAWRGK----- 238
           C +  +P   T+ +  S S  ++  + + L+    D+ +CE+    Q ++  + +     
Sbjct: 157 CLYIGIPICPTKCLYCSFSCHEMTRQIKSLLGMYTDSIICELEKTYQKIDENKNRIVAIY 216

Query: 239 ---------GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLD-VLM 288
                    G++  K  F++L  +L E   +  + +    P  +S+ L++   +L+  L 
Sbjct: 217 FGGGSPAVLGIENIKKIFTNLFDNL-EKNCIQEITFEAGRPDTISEDLLEYLAELNRYLN 275

Query: 289 PYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFR 348
             L +  Q+ +D  LK + R HT  + ++     +    +  I+SD I+G PGE ++D++
Sbjct: 276 IRLCINPQTSNDNTLKIIGRNHTFEDIKKAFALTQEYGFN-NINSDVILGLPGENENDYK 334

Query: 349 ATMDLVDKIGYA 360
            T+D V K+  A
Sbjct: 335 KTIDDVLKLSPA 346


>gi|225016711|ref|ZP_03705903.1| hypothetical protein CLOSTMETH_00621 [Clostridium methylpentosum
           DSM 5476]
 gi|224950515|gb|EEG31724.1| hypothetical protein CLOSTMETH_00621 [Clostridium methylpentosum
           DSM 5476]
          Length = 369

 Score = 43.5 bits (101), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 3/88 (3%)

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           VQS  D  LK + RRHTA +  Q I   +    D  IS D ++G P +T      ++D +
Sbjct: 116 VQSAVDAELKLLGRRHTAAQAEQAITLAKQAGFD-NISCDLMLGIPNQTAQSLAQSLDWI 174

Query: 355 DK--IGYAQAFSFKYSPRLGTPGSNMLE 380
           ++  I +  A+  K  P     GS +L+
Sbjct: 175 NRQNIQHVSAYLLKIEPSTPYFGSEVLK 202


>gi|262194544|ref|YP_003265753.1| radical SAM protein [Haliangium ochraceum DSM 14365]
 gi|262077891|gb|ACY13860.1| Radical SAM domain protein [Haliangium ochraceum DSM 14365]
          Length = 540

 Score = 43.5 bits (101), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 72/170 (42%), Gaps = 21/170 (12%)

Query: 185 GCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLID-NGVCEITLLGQNVNAWRGKGLDGE 243
           GC   C FC  P+       +S  ++ ++ R+  + NG   I  +               
Sbjct: 238 GCPFTCKFCSFPFASPQWRYKSARKIANDWREYAEKNGAQVIKAMDSTFTV--------P 289

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSH---PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300
              F +LL  L E+ G+    YT ++     ++ D L  AH         L +  +S S+
Sbjct: 290 LTRFRELLELLPEV-GINWEAYTRANVIKSAEIVDALEAAHCQT------LSIGFESLSE 342

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
             LK MN+R  A + ++  + +   +  +     FI+G+PGET DDF  T
Sbjct: 343 ATLKHMNKRVRATDNQRAHELLS--KSGVDFRGSFIIGYPGETLDDFAKT 390


>gi|167947386|ref|ZP_02534460.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Endoriftia persephone
          'Hot96_1+Hot96_2']
          Length = 50

 Score = 43.5 bits (101), Expect = 0.083,   Method: Composition-based stats.
 Identities = 20/32 (62%), Positives = 25/32 (78%)

Query: 60 DDADLIVLNTCHIREKAAEKVYSFLGRIRNLK 91
          + AD+++LNTC IREKA EKV+S LGR R  K
Sbjct: 8  EQADVLLLNTCSIREKAQEKVFSQLGRWRPWK 39


>gi|282859545|ref|ZP_06268650.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Prevotella bivia JCVIHMP010]
 gi|282587773|gb|EFB92973.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Prevotella bivia JCVIHMP010]
          Length = 383

 Score = 43.5 bits (101), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 83/167 (49%), Gaps = 32/167 (19%)

Query: 269 HPRDMSDCLIKAHGDLDVLMPY--LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
           +P D+++  ++    +   +P+  + + VQ+ SD  LK ++RRHT+ +  + I  +RSV 
Sbjct: 106 NPEDITEDFVQ----ILKTLPFNRVSMGVQTFSDERLKFLHRRHTSSKIPEAIQLLRSVG 161

Query: 327 PDIAISSDFIVGFPGETDDDFRATMD--LVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
            +  IS D + GFP ET +++ A ++  +   + +  A+S  Y    GT           
Sbjct: 162 IN-NISIDLMFGFPNETQEEWIADIEKAIALNVEHISAYSLMYEE--GTA---------- 208

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI---EKHGKEKGKL 428
                 L  +QK  R +Q+  ++    ++ EVLI   EK G E+ ++
Sbjct: 209 ------LYTMQKHQRVKQI--DEEQYREMYEVLIDRLEKAGYEQYEI 247


>gi|325958322|ref|YP_004289788.1| Radical SAM domain-containing protein [Methanobacterium sp. AL-21]
 gi|325329754|gb|ADZ08816.1| Radical SAM domain protein [Methanobacterium sp. AL-21]
          Length = 450

 Score = 43.1 bits (100), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 42/190 (22%), Positives = 82/190 (43%), Gaps = 13/190 (6%)

Query: 185 GCDKFCTFCVVPYTRGIEIS-RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
           GC   C+FC      G ++  RS   VVDE   L++    E+        A+        
Sbjct: 196 GCPYQCSFCASSAMHGHKLRLRSAKSVVDEMEHLVNEHDIEMV-------AFMDDTFTIS 248

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
           K    ++  ++ E +GL      T+    +S+ L+K   D   +   + L V+S   ++L
Sbjct: 249 KKRVYEICEAIKE-RGLKNYWGCTARVDTISEDLLKTMKDAGCIT--MFLGVESADQQVL 305

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
             +N++    + ++  +  R  + D+   +  ++G PG+T    R T++ V ++  + A 
Sbjct: 306 NEVNKKTNIAKIKETFELTR--KYDMRTIASVVLGMPGDTKSSIRNTINFVKQLEPSYAV 363

Query: 364 SFKYSPRLGT 373
               +P  GT
Sbjct: 364 FSLATPYPGT 373


>gi|20094865|ref|NP_614712.1| Fe-S oxidoreductase [Methanopyrus kandleri AV19]
 gi|19888092|gb|AAM02642.1| Fe-S oxidoreductase [Methanopyrus kandleri AV19]
          Length = 509

 Score = 43.1 bits (100), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 45/202 (22%), Positives = 92/202 (45%), Gaps = 19/202 (9%)

Query: 177 TAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR 236
              + +  GC + C FC  P  R +  S  LS+++++    +  G  EI L  ++V  ++
Sbjct: 217 NGIVEVARGCGRGCKFCS-PDMRELR-SFPLSKILEDVDVNVRGGHEEILLHAEDVLRYK 274

Query: 237 GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCL-------IKAHGDLDVLMP 289
             G         +L  ++    G+ R+  + SH    + C        I     +  L+P
Sbjct: 275 ADGWRPNVEAVLELFSAVMNRPGVKRV--SVSHVALSTVCQFDERLGEISEVAGVGELVP 332

Query: 290 YL--HLPVQSGSDRIL-KSMNRRHTAY---EYRQIIDRIRSVRPD--IAISSDFIVGFPG 341
           ++   + V++GS R++ + M  +   Y   E+  ++++   +  D         I+G PG
Sbjct: 333 WMGAQVGVETGSPRLMAEHMPGKVAPYKVEEWPDVVEQAFGIMNDHGWVPCGTLILGLPG 392

Query: 342 ETDDDFRATMDLVDKIGYAQAF 363
           ET+DD   T++L+D++   ++F
Sbjct: 393 ETEDDVMMTVELLDRLRDYKSF 414


>gi|258623853|ref|ZP_05718807.1| Predicted Fe-S oxidoreductase [Vibrio mimicus VM603]
 gi|262166425|ref|ZP_06034162.1| hypothetical protein VMA_002881 [Vibrio mimicus VM223]
 gi|262170673|ref|ZP_06038351.1| hypothetical protein VII_001485 [Vibrio mimicus MB-451]
 gi|258583842|gb|EEW08637.1| Predicted Fe-S oxidoreductase [Vibrio mimicus VM603]
 gi|261891749|gb|EEY37735.1| hypothetical protein VII_001485 [Vibrio mimicus MB-451]
 gi|262026141|gb|EEY44809.1| hypothetical protein VMA_002881 [Vibrio mimicus VM223]
          Length = 312

 Score = 43.1 bits (100), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 2/69 (2%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +L L +Q+  D  LK +NR H    Y +I  + R++   I + +  IVG PGE   +  +
Sbjct: 141 WLELGLQTAHDHTLKRINRGHDFACYAEITAKARAL--GIKVCTHLIVGLPGEGRSENMS 198

Query: 350 TMDLVDKIG 358
           T+  V K+G
Sbjct: 199 TLQQVLKVG 207


>gi|258620899|ref|ZP_05715933.1| conserved hypothetical protein [Vibrio mimicus VM573]
 gi|258586287|gb|EEW11002.1| conserved hypothetical protein [Vibrio mimicus VM573]
          Length = 312

 Score = 43.1 bits (100), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 2/69 (2%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +L L +Q+  D  LK +NR H    Y +I  + R++   I + +  IVG PGE   +  +
Sbjct: 141 WLELGLQTAHDHTLKRINRGHDFACYAEITAKARAL--GIKVCTHLIVGLPGEGRSENMS 198

Query: 350 TMDLVDKIG 358
           T+  V K+G
Sbjct: 199 TLQQVLKVG 207


>gi|148979752|ref|ZP_01815689.1| hypothetical protein VSWAT3_08306 [Vibrionales bacterium SWAT-3]
 gi|145961635|gb|EDK26934.1| hypothetical protein VSWAT3_08306 [Vibrionales bacterium SWAT-3]
          Length = 317

 Score = 43.1 bits (100), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 2/69 (2%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +L L +Q+ ++  LK +NR H    Y  I  R R++   I + +  IVG P ET  D   
Sbjct: 143 WLELGLQTANNSTLKRINRGHDFAVYETITQRARAL--GIKVCTHLIVGLPKETKADNLE 200

Query: 350 TMDLVDKIG 358
           T+D V  +G
Sbjct: 201 TLDKVLAVG 209


>gi|227504546|ref|ZP_03934595.1| coproporphyrinogen dehydrogenase [Corynebacterium striatum ATCC
           6940]
 gi|227198866|gb|EEI78914.1| coproporphyrinogen dehydrogenase [Corynebacterium striatum ATCC
           6940]
          Length = 347

 Score = 43.1 bits (100), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 61/147 (41%), Gaps = 12/147 (8%)

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
           T S+P   S    +  G L+     + L +QS SD +L+ + R HT     +  D  R  
Sbjct: 67  TESNPESTSPEYFE--GLLESGFTRVSLGMQSASDSVLRVLERAHTP---GRAFDAAREA 121

Query: 326 RPDI--AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP-----GSNM 378
           R      ++ D I G P ETDDD R T+D V + G     ++      GT         +
Sbjct: 122 RAAGFEHVNLDMIYGTPTETDDDVRLTLDRVLETGVDHVSAYSLIVEDGTRMARKVNKGL 181

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSF 405
           L   DE+V A R   +   L  +   +
Sbjct: 182 LPAPDEDVLARRYEAVSATLEAEGFEW 208


>gi|262404694|ref|ZP_06081249.1| hypothetical protein VOA_002692 [Vibrio sp. RC586]
 gi|262349726|gb|EEY98864.1| hypothetical protein VOA_002692 [Vibrio sp. RC586]
          Length = 312

 Score = 43.1 bits (100), Expect = 0.100,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 2/69 (2%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +L L +Q+  D  LK +NR H    Y +I  + R++   I + +  IVG PGE   D  A
Sbjct: 141 WLELGLQTAHDHTLKRINRGHDFACYAEITAKARAL--GIKVCTHLIVGLPGEGRCDNLA 198

Query: 350 TMDLVDKIG 358
           T+  V  +G
Sbjct: 199 TLQQVLSVG 207


>gi|320352170|ref|YP_004193509.1| Radical SAM domain-containing protein [Desulfobulbus propionicus
           DSM 2032]
 gi|320120672|gb|ADW16218.1| Radical SAM domain protein [Desulfobulbus propionicus DSM 2032]
          Length = 313

 Score = 43.1 bits (100), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 37/62 (59%), Gaps = 1/62 (1%)

Query: 293 LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352
           L VQS  DR L+ +NR H   ++   +DR+ +V+  I I +  I+G PGE++ +  AT+ 
Sbjct: 143 LGVQSIHDRSLRLLNRNHCFADFLAAVDRLHAVQ-RIEIGAHLILGIPGESEAEMLATVR 201

Query: 353 LV 354
            V
Sbjct: 202 TV 203


>gi|326779437|ref|ZP_08238702.1| oxygen-independent coproporphyrinogen III oxidase [Streptomyces cf.
           griseus XylebKG-1]
 gi|326659770|gb|EGE44616.1| oxygen-independent coproporphyrinogen III oxidase [Streptomyces cf.
           griseus XylebKG-1]
          Length = 413

 Score = 43.1 bits (100), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 1/58 (1%)

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352
           +QS    +LK ++R HT       +   R+   D  ++ D I G PGE+DDD+RAT+D
Sbjct: 160 MQSAKQHVLKILDRTHTPGRPEACVAEARAAGFD-HVNLDLIYGTPGESDDDWRATLD 216


>gi|304314226|ref|YP_003849373.1| oxidoreductase [Methanothermobacter marburgensis str. Marburg]
 gi|302587685|gb|ADL58060.1| predicted oxidoreductase [Methanothermobacter marburgensis str.
           Marburg]
          Length = 522

 Score = 43.1 bits (100), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 57/286 (19%), Positives = 120/286 (41%), Gaps = 27/286 (9%)

Query: 175 GVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEA-RKLIDNGVCEITLLGQNVN 233
           G +  L +  GC + C FC+  Y    +   SL +++D A R     G  +++L+G   +
Sbjct: 204 GRSFLLGVSRGCSRGCRFCMSGYLYRPKRETSLPRLLDVAERGRHATGYSKVSLIGAAAS 263

Query: 234 AWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHL 293
            +        +    D + S+  +    R+   ++H   + D L++       + P   L
Sbjct: 264 DYSRIDELSSRLVDMDFMVSMPSL----RIESLSAH---LMDTLLEGGLKTVTVAPESTL 316

Query: 294 PVQSGSDR-ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352
            ++   ++ I  SM  + T            +++    +   F+ G PGE+++D +    
Sbjct: 317 KLRRKLNKPISDSMVFKKTE----------EAIKKGFRVKMYFLTGVPGESEEDLKDLTR 366

Query: 353 LVDKIGYAQ--AFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQ-QVSFNDAC 409
           L+  +   +    +F  +P +  P + +     +  + +R + L +KL     V F    
Sbjct: 367 LIRGLHEIRRGMVTFSINPLIPKPHTPLQWMEYDMRRMKRKIKLLRKLTGGVPVKFGSPL 426

Query: 410 VGQIIEVLIEKHGKEKGKLVGRSPW----LQSVVLNSKNHNIGDII 451
            G +I+ ++   G E GKL+ R+ +    L+   L+    N GD++
Sbjct: 427 SG-LIQYVLSTGGPETGKLIERASFSKVPLREWELHCSRRNPGDVL 471


>gi|254507472|ref|ZP_05119606.1| radical SAM protein [Vibrio parahaemolyticus 16]
 gi|219549542|gb|EED26533.1| radical SAM protein [Vibrio parahaemolyticus 16]
          Length = 314

 Score = 43.1 bits (100), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 40/69 (57%), Gaps = 2/69 (2%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +L L +Q+ ++  LK +NR H    Y +I  R R++   I + +  IVG P E+ +D  +
Sbjct: 141 WLELGLQTANNDTLKRINRGHDFECYAEITQRARAL--GIKVCTHLIVGLPKESREDNIS 198

Query: 350 TMDLVDKIG 358
           T+D V ++G
Sbjct: 199 TLDKVLQVG 207


>gi|289434758|ref|YP_003464630.1| oxygen-independent coproporphyrinogen III oxidase [Listeria
           seeligeri serovar 1/2b str. SLCC3954]
 gi|289171002|emb|CBH27544.1| oxygen-independent coproporphyrinogen III oxidase [Listeria
           seeligeri serovar 1/2b str. SLCC3954]
          Length = 384

 Score = 43.1 bits (100), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 56/105 (53%), Gaps = 5/105 (4%)

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
           ++P D+S   ++   D  V    + + VQS ++ +LK + R HT  +  Q ++ +R+V  
Sbjct: 103 ANPGDLSVAKVQTMKDYGV--NRISMGVQSFNNDLLKKIGRIHTVKDVYQSVENMRTVGF 160

Query: 328 DIAISSDFIVGFPGETDDDFRATMD--LVDKIGYAQAFSFKYSPR 370
           +  +S D I   PG+T+ DF+ T++  L   + +  A+S    P+
Sbjct: 161 E-NVSIDLIFSLPGQTEADFQDTLNQALALDLPHYSAYSLIIEPK 204


>gi|255746950|ref|ZP_05420895.1| hypothetical protein VCH_003349 [Vibrio cholera CIRS 101]
 gi|262161506|ref|ZP_06030616.1| hypothetical protein VIG_002758 [Vibrio cholerae INDRE 91/1]
 gi|262168358|ref|ZP_06036055.1| hypothetical protein VIJ_001541 [Vibrio cholerae RC27]
 gi|255735352|gb|EET90752.1| hypothetical protein VCH_003349 [Vibrio cholera CIRS 101]
 gi|262023250|gb|EEY41954.1| hypothetical protein VIJ_001541 [Vibrio cholerae RC27]
 gi|262028817|gb|EEY47471.1| hypothetical protein VIG_002758 [Vibrio cholerae INDRE 91/1]
          Length = 312

 Score = 43.1 bits (100), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 2/69 (2%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +L L +Q+  D+ LK +NR H    Y +I  + R++   I + +  IVG PGE   +   
Sbjct: 141 WLELGLQTAHDQTLKRINRGHDFACYAEITAKARAL--GIKVCTHLIVGLPGEERTENLT 198

Query: 350 TMDLVDKIG 358
           T+  V K+G
Sbjct: 199 TLQQVLKVG 207


>gi|313637790|gb|EFS03140.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Listeria seeligeri FSL S4-171]
          Length = 384

 Score = 43.1 bits (100), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 56/105 (53%), Gaps = 5/105 (4%)

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
           ++P D+S   ++   D  V    + + VQS ++ +LK + R HT  +  Q ++ +R+V  
Sbjct: 103 ANPGDLSVAKVQTMKDYGV--NRISMGVQSFNNDLLKKIGRIHTVKDVYQSVENMRTVGF 160

Query: 328 DIAISSDFIVGFPGETDDDFRATMD--LVDKIGYAQAFSFKYSPR 370
           +  +S D I   PG+T+ DF+ T++  L   + +  A+S    P+
Sbjct: 161 E-NVSIDLIFSLPGQTEADFQDTLNQALALDLPHYSAYSLIIEPK 204


>gi|52549561|gb|AAU83410.1| Fe-S oxidoreductase [uncultured archaeon GZfos28B8]
          Length = 521

 Score = 43.1 bits (100), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 42/199 (21%), Positives = 88/199 (44%), Gaps = 17/199 (8%)

Query: 174 RGVT--AFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQN 231
           RG T    + I  GC + C+FC  P  + +   +S+  VV + R  ++ G   I L  ++
Sbjct: 218 RGATIHGLVEISRGCGRGCSFCT-PTMQKLRF-KSVEHVVRDVRTNVEAGQRSICLHSED 275

Query: 232 VNAWRGKGLDGEKCTFSDLLYSLSEIKGL-------VRLRYTTSHPRDMSDCLIKAHGDL 284
           +  +  K +  +     +L+ S++ ++G+       + L     +P  ++      H  L
Sbjct: 276 ILRYGAKKIAPDDARVLNLIKSVASVEGIESVGASHIALATVYHNPDLLNAVSETCHSML 335

Query: 285 DVLMPYLHLPVQSGSDRILKSMNR----RHTAYEYRQIIDRIRSVRPD--IAISSDFIVG 338
           D         +++GS R++    R       A ++++I+ +   +  D     ++  I G
Sbjct: 336 DQDWQGAQTGIETGSARLIAKHMRGKALPSPAEKWQEIVTQAFGILDDNNWFCAATMING 395

Query: 339 FPGETDDDFRATMDLVDKI 357
            P ET DD   +++LV+ +
Sbjct: 396 LPEETTDDVIKSIELVEDL 414


>gi|253701958|ref|YP_003023147.1| radical SAM protein [Geobacter sp. M21]
 gi|251776808|gb|ACT19389.1| Radical SAM domain protein [Geobacter sp. M21]
          Length = 564

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 51/207 (24%), Positives = 89/207 (42%), Gaps = 20/207 (9%)

Query: 179 FLTIQEGCDKFCTFCVVP--YTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAW 235
           F+    GC   C FC  P  + RG+   RS   VV E R L +  G+   +       A 
Sbjct: 189 FVITSRGCPASCLFCSSPLFWGRGVRF-RSPESVVHEIRSLKERYGLIYFSFRDDTFTAN 247

Query: 236 RGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPV 295
           RG+ L   +    + L+ +   +  V      +   +M   + +A  +       +   V
Sbjct: 248 RGRVLQICRLLREERLHVMWNCQSRV-----NAVDEEMLIAMKQAGCEC------IQFGV 296

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
           +SGS ++LK++ +R    E  +    +R     I +S   I G PGE ++D R T+ L++
Sbjct: 297 ESGSPQMLKALGKRILPPEVERAAAAVRRA--GINLSVYLITGIPGEGEEDLRQTVRLIE 354

Query: 356 KIGYAQAFSFKYSPRLGTPGSNMLEQV 382
            I   +    + SP +  PG+ +L + 
Sbjct: 355 SI---RPHDGQVSPLVYYPGTELLARA 378


>gi|15642368|ref|NP_232001.1| hypothetical protein VC2371 [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121588209|ref|ZP_01677953.1| conserved hypothetical protein [Vibrio cholerae 2740-80]
 gi|121727483|ref|ZP_01680601.1| conserved hypothetical protein [Vibrio cholerae V52]
 gi|147675264|ref|YP_001217874.1| hypothetical protein VC0395_A1950 [Vibrio cholerae O395]
 gi|153819126|ref|ZP_01971793.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457]
 gi|153822760|ref|ZP_01975427.1| conserved hypothetical protein [Vibrio cholerae B33]
 gi|227082495|ref|YP_002811046.1| hypothetical protein VCM66_2294 [Vibrio cholerae M66-2]
 gi|229507563|ref|ZP_04397068.1| hypothetical protein VCF_002792 [Vibrio cholerae BX 330286]
 gi|229512241|ref|ZP_04401720.1| hypothetical protein VCE_003653 [Vibrio cholerae B33]
 gi|229519377|ref|ZP_04408820.1| hypothetical protein VCC_003407 [Vibrio cholerae RC9]
 gi|229607069|ref|YP_002877717.1| hypothetical protein VCD_001978 [Vibrio cholerae MJ-1236]
 gi|254849493|ref|ZP_05238843.1| conserved hypothetical protein [Vibrio cholerae MO10]
 gi|298500267|ref|ZP_07010072.1| radical SAM protein [Vibrio cholerae MAK 757]
 gi|9656941|gb|AAF95514.1| conserved hypothetical protein [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121547551|gb|EAX57654.1| conserved hypothetical protein [Vibrio cholerae 2740-80]
 gi|121630151|gb|EAX62553.1| conserved hypothetical protein [Vibrio cholerae V52]
 gi|126510316|gb|EAZ72910.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457]
 gi|126519705|gb|EAZ76928.1| conserved hypothetical protein [Vibrio cholerae B33]
 gi|146317147|gb|ABQ21686.1| conserved hypothetical protein [Vibrio cholerae O395]
 gi|227010383|gb|ACP06595.1| conserved hypothetical protein [Vibrio cholerae M66-2]
 gi|227014266|gb|ACP10476.1| conserved hypothetical protein [Vibrio cholerae O395]
 gi|229344066|gb|EEO09041.1| hypothetical protein VCC_003407 [Vibrio cholerae RC9]
 gi|229352206|gb|EEO17147.1| hypothetical protein VCE_003653 [Vibrio cholerae B33]
 gi|229355068|gb|EEO19989.1| hypothetical protein VCF_002792 [Vibrio cholerae BX 330286]
 gi|229369724|gb|ACQ60147.1| hypothetical protein VCD_001978 [Vibrio cholerae MJ-1236]
 gi|254845198|gb|EET23612.1| conserved hypothetical protein [Vibrio cholerae MO10]
 gi|297540960|gb|EFH77014.1| radical SAM protein [Vibrio cholerae MAK 757]
          Length = 316

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 2/69 (2%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +L L +Q+  D+ LK +NR H    Y +I  + R++   I + +  IVG PGE   +   
Sbjct: 145 WLELGLQTAHDQTLKRINRGHDFACYAEITAKARAL--GIKVCTHLIVGLPGEERTENLT 202

Query: 350 TMDLVDKIG 358
           T+  V K+G
Sbjct: 203 TLQQVLKVG 211


>gi|239941056|ref|ZP_04692993.1| coproporphyrinogen III oxidase [Streptomyces roseosporus NRRL
           15998]
 gi|239987535|ref|ZP_04708199.1| coproporphyrinogen III oxidase [Streptomyces roseosporus NRRL
           11379]
 gi|291444496|ref|ZP_06583886.1| coproporphyrinogen III oxidase [Streptomyces roseosporus NRRL
           15998]
 gi|291347443|gb|EFE74347.1| coproporphyrinogen III oxidase [Streptomyces roseosporus NRRL
           15998]
          Length = 413

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 1/58 (1%)

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352
           +QS    +LK ++R HT       +   R+   D  ++ D I G PGE+DDD+RAT+D
Sbjct: 160 MQSAKQHVLKILDRTHTPGRPEACVAEARAAGFD-HVNLDLIYGTPGESDDDWRATLD 216


>gi|328882386|emb|CCA55625.1| putative coproporphyrinogen III oxidase [Streptomyces venezuelae
           ATCC 10712]
          Length = 410

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 51/109 (46%), Gaps = 6/109 (5%)

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           +QS    +LK ++R HT       +   R+   +  ++ D I G PGETDDD+RA++D  
Sbjct: 157 MQSAKQHVLKILDRTHTPGRPEACVAEARAAGFE-HVNLDLIYGTPGETDDDWRASLDAA 215

Query: 355 DKIGYAQAFSFKYSPRLGTPGSNMLEQ-----VDENVKAERLLCLQKKL 398
              G     ++      GT  +  + +      D++V A+R L  +  L
Sbjct: 216 IGAGPDHVSAYALIVEEGTQLARRIRRGEVPMTDDDVHADRYLIAEDVL 264


>gi|149190329|ref|ZP_01868602.1| hypothetical protein VSAK1_13987 [Vibrio shilonii AK1]
 gi|148835818|gb|EDL52782.1| hypothetical protein VSAK1_13987 [Vibrio shilonii AK1]
          Length = 312

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 2/69 (2%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +L L +Q+  D  LK +NR H    Y +I  R R++   I + +  IVG P E+  D   
Sbjct: 141 WLELGLQTAHDHTLKRINRGHDFAVYDEITRRARAL--GIKVCTHLIVGLPNESKQDNLV 198

Query: 350 TMDLVDKIG 358
           T+D V   G
Sbjct: 199 TLDKVLATG 207


>gi|262192284|ref|ZP_06050440.1| hypothetical protein VIH_002672 [Vibrio cholerae CT 5369-93]
 gi|262031834|gb|EEY50416.1| hypothetical protein VIH_002672 [Vibrio cholerae CT 5369-93]
          Length = 312

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 2/69 (2%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +L L +Q+  D+ LK +NR H    Y +I  + R++   I + +  IVG PGE   +   
Sbjct: 141 WLELGLQTAHDQTLKRINRGHDFACYAEITAKARAL--GIKVCTHLIVGLPGEGRTENLT 198

Query: 350 TMDLVDKIG 358
           T+  V K+G
Sbjct: 199 TLQQVLKVG 207


>gi|326790408|ref|YP_004308229.1| radical SAM protein [Clostridium lentocellum DSM 5427]
 gi|326541172|gb|ADZ83031.1| Radical SAM domain protein [Clostridium lentocellum DSM 5427]
          Length = 427

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 49/219 (22%), Positives = 102/219 (46%), Gaps = 37/219 (16%)

Query: 175 GVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA 234
           G+ A +    GC+  C FC +      +  R +  VVDE + L  N   ++     N   
Sbjct: 163 GIPAIIA-DRGCNNSCKFCAISKMWRSD-PRPIEAVVDELKALKTN---KVIFFDPNF-- 215

Query: 235 WRGKGLDGEKCTFSDLLYSLSEIKGLVRL--RYTTSHPRDMS--DCLIKAHGD---LDVL 287
                       F    Y+L  +K L +L  R+ ++   D++  D L++A        VL
Sbjct: 216 ------------FKPREYALELMKALEKLNIRWASNATADVAFDDELLEAARRSRCTGVL 263

Query: 288 MPYLHLPVQSGSDRILKSMNRRHTAYE-YRQIIDRIRSVRPDIAISSDFIVGFPGETDDD 346
           + +     +S S++ LK + +R +  E Y++I++R+     +IA++  F++GF  +T+++
Sbjct: 264 IGF-----ESLSEQSLKGVKKRFSNTEKYKEIVERMHHY--NIAVNGCFVLGFDHDTEEE 316

Query: 347 FRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
               + + ++I Y      +++     PGS + ++++E 
Sbjct: 317 L---LSMPERIRYMHLDLTRFAILTPIPGSPLFKELEEQ 352


>gi|254226156|ref|ZP_04919752.1| conserved hypothetical protein [Vibrio cholerae V51]
 gi|125621324|gb|EAZ49662.1| conserved hypothetical protein [Vibrio cholerae V51]
          Length = 316

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 2/69 (2%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +L L +Q+  D+ LK +NR H    Y +I  + R++   I + +  IVG PGE   +   
Sbjct: 145 WLELGLQTAHDQTLKRINRGHDFACYAEITAKARAL--GIKVCTHLIVGLPGEGRTENLT 202

Query: 350 TMDLVDKIG 358
           T+  V K+G
Sbjct: 203 TLQQVLKVG 211


>gi|126465569|ref|YP_001040678.1| radical SAM domain-containing protein [Staphylothermus marinus F1]
 gi|126014392|gb|ABN69770.1| Radical SAM domain protein [Staphylothermus marinus F1]
          Length = 474

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 52/212 (24%), Positives = 85/212 (40%), Gaps = 41/212 (19%)

Query: 178 AFLTIQEGCDKFCTFCVVPYTRGIEIS-RSLSQVVDEARKLI------------DNGVCE 224
           A +    GC   C +C+  Y  G  I  RS   V DE   L+            D+ V  
Sbjct: 200 AHVMASRGCPYGCIYCITSYFWGRRIRFRSAKNVADEVEFLVNKYKANHIAFSDDDLVIN 259

Query: 225 ITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL 284
              + + ++  + +GLD    TFS                   S    ++  ++K   D 
Sbjct: 260 KRFVREFIDEIKKRGLD---ITFS-----------------CGSRVNHINKEILKTLYDN 299

Query: 285 DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETD 344
                 L+  V+S S   L  + +R T  +  ++   ++ ++   A+ S FI+GFP ET 
Sbjct: 300 GCTA--LYFGVESASQETLDRIGKRITLEQAERVFKWVKELK-GFALGS-FILGFPWETI 355

Query: 345 DDFRATMDLVDKI--GYAQAFSFKYSPRLGTP 374
           DD + T+D   K+   Y Q  +   +P  GTP
Sbjct: 356 DDMKKTVDFAIKLDPDYVQFTAL--TPYPGTP 385


>gi|229521206|ref|ZP_04410626.1| hypothetical protein VIF_001730 [Vibrio cholerae TM 11079-80]
 gi|229341738|gb|EEO06740.1| hypothetical protein VIF_001730 [Vibrio cholerae TM 11079-80]
          Length = 316

 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 2/69 (2%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +L L +Q+  D+ LK +NR H    Y +I  + R++   I + +  IVG PGE   +   
Sbjct: 145 WLELGLQTAHDQTLKRINRGHDFACYAEITAKARAL--GIKVCTHLIVGLPGEGRTENLT 202

Query: 350 TMDLVDKIG 358
           T+  V K+G
Sbjct: 203 TLQQVLKVG 211


>gi|13541841|ref|NP_111529.1| Fe-S oxidoreductase [Thermoplasma volcanium GSS1]
 gi|14325277|dbj|BAB60181.1| hypothetical protein [Thermoplasma volcanium GSS1]
          Length = 540

 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 63/292 (21%), Positives = 122/292 (41%), Gaps = 29/292 (9%)

Query: 79  KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPE 138
           K +  LG    +K+ ++K G    V++ G  A     +I      V+ V+  +     P+
Sbjct: 125 KFFKELGE--KVKSLKLKYG--FKVIIGGPAAWQIALDIPDW---VDAVLDGEAEIDFPD 177

Query: 139 LLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC-VVPY 197
           L+++   G++V    Y    K E +  +      K      + I  GC + C FC + P 
Sbjct: 178 LVKKIENGEQVPKVTYGRMPKVEEIPTI-----IKPSRFGEVQITRGCPRGCQFCSITPE 232

Query: 198 T-RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256
           T R I     +  ++ E +  ID+G+  I LL  ++  +  K L        +L  ++ +
Sbjct: 233 TFRSI----PMDDIIKEVKLNIDHGIRGIELLTDDIMLYGSKKLQVNHEALVNLFTTVKK 288

Query: 257 IKGL-VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL-HLPV---QSGSDRILKSMNR--- 308
           +    +   + ++     S   ++A  ++     Y    PV   +SGS+RI+    R   
Sbjct: 289 LGATHIYFPHISAPGAKSSPKTVQAIAEIAEYDKYTAEAPVVGLESGSERIISKYMRGKP 348

Query: 309 -RHTAYEYRQIIDRIRSVRPDIAISS--DFIVGFPGETDDDFRATMDLVDKI 357
              T +++  +I     +  D  I       +G+P ETD+D   ++ LV ++
Sbjct: 349 FPWTPHDWGDVIIDATGIMVDNNIHPCYTMTIGYPDETDEDIEESIKLVQRM 400


>gi|153802020|ref|ZP_01956606.1| conserved hypothetical protein [Vibrio cholerae MZO-3]
 gi|124122430|gb|EAY41173.1| conserved hypothetical protein [Vibrio cholerae MZO-3]
          Length = 316

 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 2/69 (2%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +L L +Q+  D+ LK +NR H    Y +I  + R++   I + +  IVG PGE   +   
Sbjct: 145 WLELGLQTAHDQTLKRINRGHDFACYAEITAKARAL--GIKVCTHLIVGLPGEGRTENLT 202

Query: 350 TMDLVDKIG 358
           T+  V K+G
Sbjct: 203 TLQQVLKVG 211


>gi|327484872|gb|AEA79279.1| Predicted Fe-S oxidoreductase [Vibrio cholerae LMA3894-4]
          Length = 312

 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 2/69 (2%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +L L +Q+  D+ LK +NR H    Y +I  + R++   I + +  IVG PGE   +   
Sbjct: 141 WLELGLQTAHDQTLKRINRGHDFACYAEITAKARAL--GIKVCTHLIVGLPGEGRTENLT 198

Query: 350 TMDLVDKIG 358
           T+  V K+G
Sbjct: 199 TLQQVLKVG 207


>gi|269929310|ref|YP_003321631.1| Radical SAM domain-containing protein [Sphaerobacter thermophilus
           DSM 20745]
 gi|269788667|gb|ACZ40809.1| Radical SAM domain protein [Sphaerobacter thermophilus DSM 20745]
          Length = 491

 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 44/175 (25%), Positives = 72/175 (41%), Gaps = 12/175 (6%)

Query: 185 GCDKFCTFC-VVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDG 242
           GC  FC FC VV    G   ++S  +    A +L++  GV  +     N         + 
Sbjct: 196 GCPFFCNFCAVVNMVNGRWFAQSAERTASVASRLVEEWGVDAVEFYDNNFFV-----HEA 250

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
               F++ + SL  I      R  T      SDC  +   D  + M +L    +SGSD  
Sbjct: 251 RTAEFAERIRSLG-IAWWGEGRIDTLW--KYSDCTWELMRDSGLRMVFLG--AESGSDET 305

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
           L+ MN+  +A   + +    +  R  I     F++G P + + D R T+D +  +
Sbjct: 306 LQRMNKGKSASTEKTLAIAEKMRRYGIVPEFSFVLGNPPDPEADVRQTLDFIRTV 360


>gi|229514006|ref|ZP_04403468.1| hypothetical protein VCB_001651 [Vibrio cholerae TMA 21]
 gi|229349187|gb|EEO14144.1| hypothetical protein VCB_001651 [Vibrio cholerae TMA 21]
          Length = 316

 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 2/69 (2%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +L L +Q+  D+ LK +NR H    Y +I  + R++   I + +  IVG PGE   +   
Sbjct: 145 WLELGLQTAHDQTLKRINRGHDFACYAEITAKARAL--GIKVCTHLIVGLPGEGRTENLT 202

Query: 350 TMDLVDKIG 358
           T+  V K+G
Sbjct: 203 TLQQVLKVG 211


>gi|167765247|ref|ZP_02437360.1| hypothetical protein BACSTE_03635 [Bacteroides stercoris ATCC
           43183]
 gi|167696875|gb|EDS13454.1| hypothetical protein BACSTE_03635 [Bacteroides stercoris ATCC
           43183]
          Length = 337

 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 8/100 (8%)

Query: 256 EIKGLVRLRYTTSHPRDMS-----DCLIKAHGDLDVLMPY--LHLPVQSGSDRILKSMNR 308
           E+   +R  Y   H R+++     D L +A+  +   +P+  + + +Q+  D  LK +NR
Sbjct: 31  EVFETIRKYYGMEHCREITLEANPDDLTEAYAAMLQNLPFNRISMGIQTFDDSTLKLLNR 90

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFR 348
           RH A +    +   R    +  IS D I G PGETD+ ++
Sbjct: 91  RHNAAQAVNAVKHCRHAGFN-NISIDLIYGLPGETDERWK 129


>gi|317490540|ref|ZP_07949017.1| radical SAM superfamily protein [Eggerthella sp. 1_3_56FAA]
 gi|316910355|gb|EFV31987.1| radical SAM superfamily protein [Eggerthella sp. 1_3_56FAA]
          Length = 370

 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 37/153 (24%), Positives = 75/153 (49%), Gaps = 20/153 (13%)

Query: 257 IKGLVRLRYTTS---HPRDMSDCLIKAHG---------DLDVL-MPYLHLPVQSGSDRIL 303
           + GL  L YT S   H  D  +C ++A+          D+  L +  L + VQS  D +L
Sbjct: 75  LAGLSMLLYTLSLSMHLTDEVECTMEANPESLTERMVRDIWALGVNRLSIGVQSFDDDVL 134

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           +++ R H++ + R+ I+  R+   ++++  D + G PG++ + F A++    ++G     
Sbjct: 135 RTLGRAHSSDDARRAIEAARTRFENVSV--DLMCGIPGQSAESFEASVREAVRLGATHVS 192

Query: 364 SFKYSPRLGTPG-----SNMLEQVDENVKAERL 391
            +  +    TP      +  LE+ D++V+A  +
Sbjct: 193 VYPLTIEPHTPFDAAVLAGELEEPDDDVEAAHM 225


>gi|182438782|ref|YP_001826501.1| coproporphyrinogen III oxidase [Streptomyces griseus subsp. griseus
           NBRC 13350]
 gi|178467298|dbj|BAG21818.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Streptomyces griseus subsp. griseus NBRC 13350]
          Length = 410

 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 1/58 (1%)

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352
           +QS    +LK ++R HT       +   R+   D  ++ D I G PGE+DDD+RAT+D
Sbjct: 157 MQSARQHVLKILDRTHTPGRPEACVAEARAAGFD-HVNLDLIYGTPGESDDDWRATLD 213


>gi|153216222|ref|ZP_01950326.1| conserved hypothetical protein [Vibrio cholerae 1587]
 gi|153828817|ref|ZP_01981484.1| conserved hypothetical protein [Vibrio cholerae 623-39]
 gi|124114409|gb|EAY33229.1| conserved hypothetical protein [Vibrio cholerae 1587]
 gi|148875693|gb|EDL73828.1| conserved hypothetical protein [Vibrio cholerae 623-39]
          Length = 316

 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 2/69 (2%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +L L +Q+  D+ LK +NR H    Y +I  + R++   I + +  IVG PGE   +   
Sbjct: 145 WLELGLQTAHDQTLKRINRGHDFACYAEITAKARAL--GIKVCTHLIVGLPGEGRTENLT 202

Query: 350 TMDLVDKIG 358
           T+  V K+G
Sbjct: 203 TLQQVLKVG 211


>gi|297526146|ref|YP_003668170.1| Radical SAM domain protein [Staphylothermus hellenicus DSM 12710]
 gi|297255062|gb|ADI31271.1| Radical SAM domain protein [Staphylothermus hellenicus DSM 12710]
          Length = 474

 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 55/211 (26%), Positives = 84/211 (39%), Gaps = 39/211 (18%)

Query: 178 AFLTIQEGCDKFCTFCVVPYTRGIEIS-RSLSQVVDEARKLIDNGVCEITLLGQNVNAWR 236
           A +    GC   C +C+  Y  G  I  RS   V DE   L++                 
Sbjct: 200 AHVMASRGCPYGCIYCITSYFWGRRIRFRSAKNVADEVEFLVNK---------------- 243

Query: 237 GKGLDGEKCTFSD---------LLYSLSEIK--GLVRLRYTTSHPRDMSDCLIKAHGDLD 285
                     FSD         +L  + EIK  GL       S    ++  ++K   D  
Sbjct: 244 ---YKANHIAFSDDDLVINRRFVLGFIDEIKKRGLDITFSCGSRVNHINKEILKTLYDNG 300

Query: 286 VLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDD 345
                L+  V+S S   L  + +R T  +  ++   ++ ++   A+ S FI+GFP ET D
Sbjct: 301 CTA--LYFGVESASQETLNRIGKRITIEQAERVFKWVKELK-GFALGS-FILGFPWETID 356

Query: 346 DFRATMDLVDKI--GYAQAFSFKYSPRLGTP 374
           D + T+D   K+   YAQ F+   +P  GTP
Sbjct: 357 DMKKTVDFAIKLDPNYAQ-FTV-LTPYPGTP 385


>gi|229528637|ref|ZP_04418027.1| hypothetical protein VCG_001723 [Vibrio cholerae 12129(1)]
 gi|229332411|gb|EEN97897.1| hypothetical protein VCG_001723 [Vibrio cholerae 12129(1)]
          Length = 316

 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 2/69 (2%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +L L +Q+  D+ LK +NR H    Y +I  + R++   I + +  IVG PGE   +   
Sbjct: 145 WLELGLQTAHDQTLKRINRGHDFACYAEITAKARAL--GIKVCTHLIVGLPGEGRTENLT 202

Query: 350 TMDLVDKIG 358
           T+  V K+G
Sbjct: 203 TLQQVLKVG 211


>gi|226944171|ref|YP_002799244.1| MoaA, NifB, PqqE, radical SAM superfamily protein [Azotobacter
           vinelandii DJ]
 gi|226719098|gb|ACO78269.1| MoaA, NifB, PqqE, radical SAM superfamily protein [Azotobacter
           vinelandii DJ]
          Length = 470

 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 54/211 (25%), Positives = 87/211 (41%), Gaps = 33/211 (15%)

Query: 185 GCDKFCTFCVVPYTRGIEISR--SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG 242
           GC   CTFC+ P T G    R  S + V+ EA K I   + E+  L            D 
Sbjct: 200 GCRSKCTFCLWPQTVGGHRYRVRSAASVIAEA-KWIKENMPEVKELM----------FDD 248

Query: 243 EKCTFSDLLYSLSEI-KGLVRLRYTTSHPRDMSDCLIKAHGDLDVL-------MPYLHLP 294
           +  T +  L  + EI +GL  L +T S       C  KA+   + L       +  L + 
Sbjct: 249 DTFTDTSNLERVHEIARGLHALGWTWS-------CNAKANVPYESLKIMKENGLRLLLVG 301

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
            +SG D+IL ++ +       R+  +    +   I +   FI+G PGET +    T++  
Sbjct: 302 YESGDDQILHNIKKGLRTDIARKFTENCHKL--GIQVHGTFILGLPGETKETIAKTIEFA 359

Query: 355 DKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            +I      + + S     PG+ +  Q  E+
Sbjct: 360 KEI---NPHTVQVSLAAPYPGTTLYRQAVES 387


>gi|297581001|ref|ZP_06942926.1| conserved hypothetical protein [Vibrio cholerae RC385]
 gi|297534827|gb|EFH73663.1| conserved hypothetical protein [Vibrio cholerae RC385]
          Length = 316

 Score = 42.7 bits (99), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 2/69 (2%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +L L +Q+  D+ LK +NR H    Y +I  + R++   I + +  IVG PGE   +   
Sbjct: 145 WLELGLQTAHDQTLKRINRGHDFACYAEITAKARAL--GIKVCTHLIVGLPGEGRTENLT 202

Query: 350 TMDLVDKIG 358
           T+  V K+G
Sbjct: 203 TLQQVLKVG 211


>gi|313894896|ref|ZP_07828456.1| coproporphyrinogen dehydrogenase HemZ [Selenomonas sp. oral taxon
           137 str. F0430]
 gi|312976577|gb|EFR42032.1| coproporphyrinogen dehydrogenase HemZ [Selenomonas sp. oral taxon
           137 str. F0430]
          Length = 502

 Score = 42.7 bits (99), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 37/63 (58%), Gaps = 1/63 (1%)

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
           QS  +R L+ + RRHT  E  +++  +R+   ++ I+ D I+G PGET +D  +TM  V 
Sbjct: 295 QSMQERTLRRIGRRHTPEEVVRMLHDLRAAY-EVHINMDVILGLPGETAEDVVSTMAQVT 353

Query: 356 KIG 358
            + 
Sbjct: 354 ALA 356


>gi|157372576|ref|YP_001480565.1| putative radical SAM protein [Serratia proteamaculans 568]
 gi|157324340|gb|ABV43437.1| conserved hypothetical radical SAM protein [Serratia proteamaculans
           568]
          Length = 312

 Score = 42.4 bits (98), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 16/90 (17%)

Query: 275 DCLIKAHGDLDVLMPYLH--------LPVQSGSDRILKSMNRRH--TAYEYRQIIDRIRS 324
           DC+  A   LD+L  YL         L +Q+  D+ LK +NR H  + Y++   + R R 
Sbjct: 120 DCVPPA--ALDLLAGYLEQGYEVWLELGLQTAHDKTLKRINRGHDFSCYQHTARLARERG 177

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           ++    + S  IVG PGET  D  +T+  V
Sbjct: 178 LK----VCSHLIVGLPGETAADHLSTLQQV 203


>gi|325831426|ref|ZP_08164680.1| coproporphyrinogen dehydrogenase [Eggerthella sp. HGA1]
 gi|325486680|gb|EGC89128.1| coproporphyrinogen dehydrogenase [Eggerthella sp. HGA1]
          Length = 370

 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 37/153 (24%), Positives = 74/153 (48%), Gaps = 20/153 (13%)

Query: 257 IKGLVRLRYTTS---HPRDMSDCLIKAHG---------DLDVL-MPYLHLPVQSGSDRIL 303
           + GL  L YT S   H  D  +C ++A+          D+  L +  L + VQS  D +L
Sbjct: 75  LAGLSMLLYTLSLSMHLTDEVECTMEANPESLTERMVRDIWALGVNRLSIGVQSFDDDVL 134

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           +++ R H++ + R+ I+  R+   ++++  D + G PG++ + F A+     ++G     
Sbjct: 135 RTLGRAHSSDDARRAIEAARTRFENVSV--DLMCGIPGQSAESFEASAREAVRLGATHVS 192

Query: 364 SFKYSPRLGTPG-----SNMLEQVDENVKAERL 391
            +  +    TP      +  LE+ D++V+A  +
Sbjct: 193 VYPLTVEPHTPFDAAVLAGELEEPDDDVEAAHM 225


>gi|294783741|ref|ZP_06749065.1| BchE/P-methylase family protein [Fusobacterium sp. 1_1_41FAA]
 gi|294480619|gb|EFG28396.1| BchE/P-methylase family protein [Fusobacterium sp. 1_1_41FAA]
          Length = 434

 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 69/352 (19%), Positives = 147/352 (41%), Gaps = 45/352 (12%)

Query: 40  DSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGG 99
           D  + E + F +  E +    + DL+V+ T  +    A++ Y+     R       K+G 
Sbjct: 32  DRKKHEVLLFDERIEDIPMDLEVDLVVITTFTL---TAKRAYTIADNYR-------KKG- 80

Query: 100 DLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDK 159
            + VV+ G  A    EE+   +  V V      + R   L+E      + V  +  + D 
Sbjct: 81  -IYVVIGGYHASLMPEEVQEYADTVFVGSAEGNWERF--LIELENGHPQKVYEEIKLPDI 137

Query: 160 FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV-PYTRGIEISRSLSQVVDEARKLI 218
            E +       ++K      +    GC   C FC +    +G    R +  V++E +++ 
Sbjct: 138 SEVVYDRSLFKDKKYSFVVPVQFGRGCMHQCEFCTIGSVHKGDYTHRKVELVIEEIKEIF 197

Query: 219 --DNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSD- 275
             +     I  +  N+ A + K L           +  +E+K L ++++      D++  
Sbjct: 198 RTNKRAKVIYFVDDNIFANKKKAL-----------HLFNELKKL-KIKWACQGSIDIAKD 245

Query: 276 ----CLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA-YEYRQIIDRIRSVRPDIA 330
                L+   G +++L+ + ++ + +     +K MN++    ++Y  II   +  R  I 
Sbjct: 246 EDLVKLMSESGCIEMLLGFENINIMN-----IKKMNKKSNYDFDYENIIRIFKKHR--IL 298

Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           + + +++G+  +T D F+  +D  +K    + F   ++P L  PG+   E++
Sbjct: 299 VHASYVIGYDYDTKDYFQEILDFSNK---HKFFLAGFNPALPIPGTPFYERL 347


>gi|257791400|ref|YP_003182006.1| oxygen-independent coproporphyrinogen III oxidase [Eggerthella
           lenta DSM 2243]
 gi|257475297|gb|ACV55617.1| oxygen-independent coproporphyrinogen III oxidase [Eggerthella
           lenta DSM 2243]
          Length = 370

 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 37/153 (24%), Positives = 75/153 (49%), Gaps = 20/153 (13%)

Query: 257 IKGLVRLRYTTS---HPRDMSDCLIKAHG---------DLDVL-MPYLHLPVQSGSDRIL 303
           + GL  L YT S   H  D  +C ++A+          D+  L +  L + VQS  D +L
Sbjct: 75  LAGLSMLLYTLSLSMHLTDEVECTMEANPESLTERMVRDIWALGVNRLSIGVQSFDDDVL 134

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           +++ R H++ + R+ I+  R+   ++++  D + G PG++ + F A++    ++G     
Sbjct: 135 RTLGRAHSSDDARRAIEAARTRFENVSV--DLMCGIPGQSAEGFEASVREAVRLGATHVS 192

Query: 364 SFKYSPRLGTPG-----SNMLEQVDENVKAERL 391
            +  +    TP      +  LE+ D++V+A  +
Sbjct: 193 VYPLTIEPHTPFDAAVLAGELEEPDDDVEAAHM 225


>gi|16081955|ref|NP_394365.1| hypothetical protein Ta0906 [Thermoplasma acidophilum DSM 1728]
 gi|10640183|emb|CAC12035.1| conserved hypothetical protein [Thermoplasma acidophilum]
          Length = 538

 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 52/235 (22%), Positives = 97/235 (41%), Gaps = 22/235 (9%)

Query: 136 LPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC-V 194
            PEL+ +    + +    Y    K E +  +      K      + I  GC + C FC +
Sbjct: 175 FPELVRKMEKNEPIPKVTYGRMPKVEEIPTI-----IKPSRFGEVQITRGCPRGCQFCSI 229

Query: 195 VPYT-RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS 253
            P T R I I      +V E +  ID+G+  I LL  ++  +  K L        +L  +
Sbjct: 230 TPETFRSIPIE----DIVKEVQLNIDHGITGIELLTDDIMLYGSKKLQVNHEALVNLFTT 285

Query: 254 LSEIKGL-VRLRYTTSHPRDMSDCLIKAHGDLDVLMPY-LHLPV---QSGSDRILKSMNR 308
           + ++    +   + ++     S   ++A  ++     Y    PV   +SGS+RI+    R
Sbjct: 286 VKKMGATHIYFPHISAPGAKSSPKTVEAIAEIAEYDKYPAEAPVVGLESGSERIISKYMR 345

Query: 309 ----RHTAYEYRQIIDRIRSVRPDIAISS--DFIVGFPGETDDDFRATMDLVDKI 357
                 T +++  +I     +  D  I       +G+P ETD+D   ++ LV+++
Sbjct: 346 GKPFPWTPHDWGDVIIDATGIMVDNHIHPCYTMTIGYPDETDEDIEESIKLVERM 400


>gi|306834121|ref|ZP_07467241.1| radical SAM protein [Streptococcus bovis ATCC 700338]
 gi|304423694|gb|EFM26840.1| radical SAM protein [Streptococcus bovis ATCC 700338]
          Length = 313

 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 30/55 (54%)

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDD 345
           + L +Q+  D   K +NR HT   Y + + R+R + P + I S  I G PGET D
Sbjct: 144 VELGLQTTYDETSKIINRAHTYDLYVETVKRLRQLAPKVEIVSHLINGLPGETHD 198


>gi|261880419|ref|ZP_06006846.1| coproporphyrinogen dehydrogenase [Prevotella bergensis DSM 17361]
 gi|270332887|gb|EFA43673.1| coproporphyrinogen dehydrogenase [Prevotella bergensis DSM 17361]
          Length = 326

 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 1/87 (1%)

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           VQS SD  LK ++RRHTA E  +    +R  +    IS D + GFP ET  D+ + ++  
Sbjct: 73  VQSFSDSRLKFLHRRHTASEADRAFGMLRE-QGITNISIDLMFGFPEETLSDWESDIEHA 131

Query: 355 DKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
            K+      ++      GTP   +L+Q
Sbjct: 132 LKLAPEHISAYGLMYEEGTPLYQLLKQ 158


>gi|78222387|ref|YP_384134.1| radical SAM family protein [Geobacter metallireducens GS-15]
 gi|78193642|gb|ABB31409.1| Radical SAM [Geobacter metallireducens GS-15]
          Length = 563

 Score = 42.4 bits (98), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 46/181 (25%), Positives = 79/181 (43%), Gaps = 15/181 (8%)

Query: 179 FLTIQEGCDKFCTFCVVPYTRGIEIS-RSLSQVVDEARKLIDN-GVCEITLLGQNVNAWR 236
           F+    GC   C FC  P   G  +  RS   +VDE R + D  G+   +L        +
Sbjct: 189 FIITSRGCPAACRFCSSPRFWGKSLRFRSPRAMVDEIRAIRDRYGLIYFSLRDDTFTVRK 248

Query: 237 GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQ 296
            + +D  +    + ++ L   +  V      +   +M   + +A  +       +   V+
Sbjct: 249 DRVIDFCRLLLEEKVHILWNCQSRV-----NAVDEEMLIWMRRAGCEC------VQYGVE 297

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
           SGS++IL  + ++ T  + R+     R     I++S   I G PGETDDD +AT+ L+  
Sbjct: 298 SGSEKILAYLGKQITPEQVRRAAKATRRA--GISLSIYLISGVPGETDDDLQATLTLISN 355

Query: 357 I 357
           I
Sbjct: 356 I 356


>gi|288800059|ref|ZP_06405518.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Prevotella sp. oral taxon 299 str. F0039]
 gi|288333307|gb|EFC71786.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Prevotella sp. oral taxon 299 str. F0039]
          Length = 379

 Score = 42.4 bits (98), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 35/115 (30%), Positives = 52/115 (45%), Gaps = 6/115 (5%)

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
           + L +Q+ ++  LK +NRRH A E  + +D I+ V     IS D I GFP ET  D+   
Sbjct: 121 ISLGIQTFNNDQLKLINRRHNAEEAIRAVDIIKEVGIS-NISIDLIFGFPKETLTDWLFD 179

Query: 351 MDLVDKIGYAQAFSFKYSPRLGT-----PGSNMLEQVDENVKAERLLCLQKKLRE 400
           +D   K+      ++      GT          +EQ+ E +  E    L  KL E
Sbjct: 180 IDQAIKLNVQHVSAYSLMFEEGTKLYHLLKKKKIEQISEELSVEMYDVLIDKLSE 234


>gi|260174169|ref|ZP_05760581.1| coproporphyrinogen III oxidase [Bacteroides sp. D2]
          Length = 376

 Score = 42.4 bits (98), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 73/163 (44%), Gaps = 21/163 (12%)

Query: 254 LSEIKGLVRLRYTTSHPRDMS-----DCLIKAHGDLDVLMPY--LHLPVQSGSDRILKSM 306
             +I   +R  Y  SH ++++     D L   +  +   +P+  + + +Q+  D  LK +
Sbjct: 70  FEQIFDTIRTHYGLSHCQEITLEANPDDLTSEYLKMLSSLPFNRISMGIQTFDDPTLKLL 129

Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGET----DDDFRATMDLVDKIGYAQA 362
            RRH A+   + + R R       IS D I G PGET    ++D R  + L   + +  A
Sbjct: 130 KRRHNAHTAIEAVHRCREAGFQ-NISIDLIYGLPGETKERWENDLRQAVSL--NVEHISA 186

Query: 363 FSFKYSPRLGTPGSNMLEQ-----VDENVKAERLLCLQKKLRE 400
           +   Y     TP  NML+Q     VDE+   +    L + L++
Sbjct: 187 YHLIYEE--DTPIYNMLKQHQISEVDEDSSLDFFTLLIEHLQK 227


>gi|113971205|ref|YP_734998.1| putative radical SAM protein [Shewanella sp. MR-4]
 gi|113885889|gb|ABI39941.1| conserved hypothetical radical SAM protein [Shewanella sp. MR-4]
          Length = 309

 Score = 42.4 bits (98), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 54/125 (43%), Gaps = 16/125 (12%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +L L +Q+ +D  L  +NR H    Y   + R RS    + + +  I+G PGET  D+ A
Sbjct: 147 WLELGLQTANDSTLHKINRGHDFACYCDTVARARS--RGVKVCTHLILGLPGETHLDYMA 204

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDAC 409
           T+  V   G       K  P     GS M +      +A RL  L        +    AC
Sbjct: 205 TLQAVLAQGVD---GLKLHPLHVVEGSTMAKA----WRAGRLPLL-------SIEEYAAC 250

Query: 410 VGQII 414
           VG+++
Sbjct: 251 VGELV 255


>gi|118581877|ref|YP_903127.1| putative radical SAM protein [Pelobacter propionicus DSM 2379]
 gi|118504587|gb|ABL01070.1| conserved hypothetical radical SAM protein [Pelobacter propionicus
           DSM 2379]
          Length = 313

 Score = 42.4 bits (98), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 2/67 (2%)

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
           L L +QS +D IL  +NR HT  EY + + R      DI   +  I GFPGET + F  +
Sbjct: 153 LELGLQSINDDILADINRGHTLDEYLETVQRAAGRNFDIC--THLIYGFPGETREGFLKS 210

Query: 351 MDLVDKI 357
            +L+  +
Sbjct: 211 ANLIASL 217


>gi|148263437|ref|YP_001230143.1| radical SAM domain-containing protein [Geobacter uraniireducens
           Rf4]
 gi|146396937|gb|ABQ25570.1| Radical SAM domain protein [Geobacter uraniireducens Rf4]
          Length = 556

 Score = 42.4 bits (98), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 86/203 (42%), Gaps = 18/203 (8%)

Query: 179 FLTIQEGCDKFCTFCVVPYTRGIEIS-RSLSQVVDEARKLIDN-GVCEITLLGQNVNAWR 236
           F+    GC   C FC  P   G  +  RS   VVDE R + D  G+   ++        +
Sbjct: 191 FIVTSRGCPAVCVFCSSPLFWGRSLRLRSPRAVVDEIRMIRDRYGLIYFSIRDDTFTVDK 250

Query: 237 GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQ 296
           G+ ++  +    + ++ L   +  V       +  D    L+      + +       V+
Sbjct: 251 GRVMEFCRLLQEEKVHILWNCQSRV-------NAVDEEMLLVMKRSGCECI----QFGVE 299

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
           SGS R+LK++ +R T  E R+    +R     I +S   I G   ETD+D +A++ L++ 
Sbjct: 300 SGSPRVLKALGKRITTEEVRRAAAAVRLA--GIHLSIYLITGVADETDEDLKASIRLIES 357

Query: 357 IGYAQAFSFKYSPRLGTPGSNML 379
           I   +    + SP    PG+ + 
Sbjct: 358 I---RPHDGQVSPLAYYPGTALF 377


>gi|94967903|ref|YP_589951.1| radical SAM family Fe-S protein [Candidatus Koribacter versatilis
           Ellin345]
 gi|94549953|gb|ABF39877.1| Fe-S protein, radical SAM family [Candidatus Koribacter versatilis
           Ellin345]
          Length = 501

 Score = 42.4 bits (98), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 55/209 (26%), Positives = 91/209 (43%), Gaps = 46/209 (22%)

Query: 185 GCDKFCTFC--VVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLD 241
           GC   C +C  +V Y R    + +  +VV E   L+    + EI LL  N          
Sbjct: 195 GCPYACNYCTDMVFYKRRFN-ALNAERVVAEMTGLVAKFKIAEIALLDSNFPV------- 246

Query: 242 GEKCTFSDLLYSLSEIKGL----VRLRYTTSHPRD----MSD---CLIKAHGDLDVLMPY 290
                  D+  +++  +G+    V  R+T     D    MSD    +++A G     + +
Sbjct: 247 -------DVKRAVAIARGIYESGVPFRWTFQASTDFLFRMSDDEVKVLRASG-----VSH 294

Query: 291 LHLPVQSGSDRILKSMNRRHT----AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDD 346
           +    +S S+ +LK MN+RH      YE  +  D        I ++ + I G+PGET++D
Sbjct: 295 MGFGTESTSESVLKLMNKRHQRMNEVYETARKADAA-----GIRVTFNLIFGYPGETEND 349

Query: 347 FRATMDLVDKIGYAQAF-SFKYSPRLGTP 374
              T   + +I  A+ F S  +SP + TP
Sbjct: 350 RAETFRAMSEI--AREFQSVSFSPNIFTP 376


>gi|325978946|ref|YP_004288662.1| radical SAM protein [Streptococcus gallolyticus subsp. gallolyticus
           ATCC BAA-2069]
 gi|325178874|emb|CBZ48918.1| radical SAM protein [Streptococcus gallolyticus subsp. gallolyticus
           ATCC BAA-2069]
          Length = 313

 Score = 42.4 bits (98), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 30/55 (54%)

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDD 345
           + L +Q+  D   K +NR HT   Y + + R+R + P + I S  I G PGET D
Sbjct: 144 VELGLQTTYDETSKIINRAHTYDLYVETVKRLRQLAPKVEIVSHLINGLPGETHD 198


>gi|58698370|ref|ZP_00373284.1| MiaB-like tRNA modifying enzyme [Wolbachia endosymbiont of
           Drosophila ananassae]
 gi|58535124|gb|EAL59209.1| MiaB-like tRNA modifying enzyme [Wolbachia endosymbiont of
           Drosophila ananassae]
          Length = 151

 Score = 42.4 bits (98), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 73/164 (44%), Gaps = 27/164 (16%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V ++GC++N Y+S  +++       E V        +V+++C +  +A  +V   + +I 
Sbjct: 4   VITFGCRLNFYESELIKEALKKAKRENV--------VVVHSCAVTNEAERQVKQKIRKI- 54

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
             KN   KE     ++V GC  Q + E +    P V+ V+G Q   +    L        
Sbjct: 55  -YKNDPNKE-----IIVVGCAVQLDPE-VYSSIPGVSKVLGNQDKLKAENYL-------- 99

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTF 192
           + D    V D      +++G  ++ R   AF+ IQ GC+  CT 
Sbjct: 100 LNDDKILVSDNQVEPVLINGFEDKSR---AFIEIQNGCNHSCTL 140


>gi|306831999|ref|ZP_07465154.1| radical SAM protein [Streptococcus gallolyticus subsp. gallolyticus
           TX20005]
 gi|304425925|gb|EFM29042.1| radical SAM protein [Streptococcus gallolyticus subsp. gallolyticus
           TX20005]
          Length = 313

 Score = 42.4 bits (98), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 30/55 (54%)

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDD 345
           + L +Q+  D   K +NR HT   Y + + R+R + P + I S  I G PGET D
Sbjct: 144 VELGLQTTYDETSKIINRAHTYDLYVETVKRLRQLAPKVEIVSHLINGLPGETHD 198


>gi|119487767|ref|ZP_01621276.1| hypothetical protein L8106_29835 [Lyngbya sp. PCC 8106]
 gi|119455600|gb|EAW36737.1| hypothetical protein L8106_29835 [Lyngbya sp. PCC 8106]
          Length = 528

 Score = 42.4 bits (98), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 62/252 (24%), Positives = 109/252 (43%), Gaps = 39/252 (15%)

Query: 185 GCDKFCTFCVVPYT----RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL 240
            C + C FC+  Y     R   +  SL   +++   +       I LLG +V        
Sbjct: 214 SCPEMCRFCLASYLTLPFRTASLETSLIPAIEQGLTVTK----RIGLLGASVT------- 262

Query: 241 DGEKCTFSDLLYSLSEIK-GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
             +   F++LL  LS+ K   VRL   +     ++  L +     D     L + ++SGS
Sbjct: 263 --QHPEFNELLDYLSQPKYDDVRLSIASVRTNTVTVQLAETLAKRDTKS--LTIAIESGS 318

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPD--IAISSDFIVGFPGETDDDFRATMDLVDKI 357
           + + K +N++    E  +II  + + +     A+    +VG PGE  +D  AT+ L+ ++
Sbjct: 319 ENLRKIINKK---LENEEIIQAVVNAKAGGLKALKLYGMVGIPGEYPEDVEATLALMKQL 375

Query: 358 GYAQAFSFK-------YSPRLGTPGSNMLEQVDENVKAE-RLLCLQKKLREQQVSFN-DA 408
             A A   K       + P+  TP     +    N +AE RL  L+K LR+  + F  ++
Sbjct: 376 KKA-APGLKLTLGCSTFVPKSHTP----FQWFGVNPEAEKRLKYLEKNLRKNGIEFRPES 430

Query: 409 CVGQIIEVLIEK 420
               +I+ LI +
Sbjct: 431 YKWSVIQALISR 442


>gi|88797931|ref|ZP_01113518.1| hypothetical protein MED297_00805 [Reinekea sp. MED297]
 gi|88779128|gb|EAR10316.1| hypothetical protein MED297_00805 [Reinekea sp. MED297]
          Length = 310

 Score = 42.4 bits (98), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 27/99 (27%), Positives = 45/99 (45%), Gaps = 13/99 (13%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETD----D 345
           +L L +QS  D  L  +NR HT  +YR  + R R +   + + +  IVG PGE+     D
Sbjct: 144 WLELGLQSAHDETLALINRGHTMADYRDAVTRARQL--GLKVCTHLIVGLPGESKIHVLD 201

Query: 346 DFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
            ++  +D       A     K+ P     G+ +  Q+ +
Sbjct: 202 SWQQVLD-------AGVDGVKWHPLHVVKGTQLARQLTQ 233


>gi|288905979|ref|YP_003431201.1| hypothetical protein GALLO_1788 [Streptococcus gallolyticus UCN34]
 gi|288732705|emb|CBI14279.1| conserved hypothetical protein, radical SAM motif [Streptococcus
           gallolyticus UCN34]
          Length = 313

 Score = 42.4 bits (98), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 30/55 (54%)

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDD 345
           + L +Q+  D   K +NR HT   Y + + R+R + P + I S  I G PGET D
Sbjct: 144 VELGLQTTYDETSKIINRAHTYDLYVETVKRLRQLAPKVEIVSHLINGLPGETHD 198


>gi|158521512|ref|YP_001529382.1| radical SAM domain-containing protein [Desulfococcus oleovorans
           Hxd3]
 gi|158510338|gb|ABW67305.1| Radical SAM domain protein [Desulfococcus oleovorans Hxd3]
          Length = 341

 Score = 42.4 bits (98), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 57/239 (23%), Positives = 98/239 (41%), Gaps = 38/239 (15%)

Query: 176 VTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLI----DN-GVCEITLLGQ 230
           V  FL    GC   C FC      G + S +   + D   + +    DN G  +I   G 
Sbjct: 10  VPVFLP-HAGCPHRCVFCDQDAITGQKASLTADDLHDHVHRYLQYRGDNRGHAQIAFYGG 68

Query: 231 NVNAWRGKGLDGEKCTFSDLLYSLSEI--KGLVR-LRYTTSHPRDMSDCLIKAHGDL--D 285
           N        L  E+ + + +L++ S    +GLV+ +R++T       D + + + DL  D
Sbjct: 69  NF-------LGLERESLTQMLHAASAFVDQGLVQAIRFSTR-----PDTITQKNLDLLKD 116

Query: 286 VLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDD 345
             +  + + VQS  DR+L+   R HTA +    +  ++         +  + G PG   D
Sbjct: 117 YPVTTVEVGVQSMDDRVLEKARRGHTAEQSTAALLLLKQA--GYETGAQLMTGLPG---D 171

Query: 346 DFRATMDLVDKIGYAQAFSFKYSPRL---GTP-------GSNMLEQVDENVKAERLLCL 394
           D R +++   K+   +    +  P L   G+P       G  M + +D  V     +CL
Sbjct: 172 DGRVSIETAKKVAVLKPDFARIYPTLVITGSPLARHYRQGEYMPQTLDAAVAVATTMCL 230


>gi|148270321|ref|YP_001244781.1| radical SAM domain-containing protein [Thermotoga petrophila RKU-1]
 gi|147735865|gb|ABQ47205.1| Radical SAM domain protein [Thermotoga petrophila RKU-1]
          Length = 551

 Score = 42.0 bits (97), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 54/251 (21%), Positives = 103/251 (41%), Gaps = 34/251 (13%)

Query: 180 LTIQEGCDK--FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR- 236
           + +  GC++  FC+FC  P   G   SR +  ++ E   L   G C     G+  N    
Sbjct: 178 IEVSRGCERRTFCSFCTEPLLHGRLKSRDVQAILKEIESLYRAG-CRAFRFGRAANILAF 236

Query: 237 GKGLDGEKCT---FSDLLYSLSEIKGLVRLRYT-TSHP----------RDMSDCLIKAHG 282
           G   +G K +     +L     E+   + + +T  ++P          R + + +++ + 
Sbjct: 237 GSDRNGGKPSPEILEELYSGTREVAPHLEVLHTDNANPSYLVTYEKECRKIVETIVRYNT 296

Query: 283 DLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ---IIDRIRSVR----PDIAISSDF 335
             DV        V+S  + +LK  N + +  E+ +   +++ I  VR    P +    + 
Sbjct: 297 PGDV----FSFGVESFDENVLKKNNVQGSPEEFLKAIAVVNEIGGVRVDGIPKLLPGVNL 352

Query: 336 IVGFPGETDDDFRATMDLVDKI---GYA--QAFSFKYSPRLGTPGSNMLEQVDENVKAER 390
           I G PGET++  +     + +I   GY   +    K     GTP    L+     +K+  
Sbjct: 353 IFGLPGETEETLKKNYSYLKRILDEGYLLRRINIRKLLAYPGTPVYEYLKNKKHRIKSHL 412

Query: 391 LLCLQKKLREQ 401
               ++K+RE+
Sbjct: 413 HEQWKRKIREE 423


>gi|91201681|emb|CAJ74741.1| hypothetical protein kuste3978 [Candidatus Kuenenia
           stuttgartiensis]
          Length = 616

 Score = 42.0 bits (97), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 13/89 (14%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFI--VGFPGETDDDF 347
           YLHL  +SGS+RILK M++  T      I+ ++  +  +  I +  +   GFPGE+ +D 
Sbjct: 442 YLHLGFESGSERILKRMDKSTTT----NIMRKMLKISSNAGIWNHVMGFFGFPGESYEDA 497

Query: 348 RATM-------DLVDKIGYAQAFSFKYSP 369
           + T+       + V  IG+      KY+P
Sbjct: 498 QQTIQFLEENKEFVHSIGFGTFDLCKYAP 526


>gi|330468268|ref|YP_004406011.1| Radical SAM domain-containing protein [Verrucosispora maris
           AB-18-032]
 gi|328811239|gb|AEB45411.1| Radical SAM domain-containing protein [Verrucosispora maris
           AB-18-032]
          Length = 456

 Score = 42.0 bits (97), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 45/203 (22%), Positives = 86/203 (42%), Gaps = 11/203 (5%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK 238
           L +  GC   C FC  P+    +   RS++ V     ++   G+ ++  +     ++  +
Sbjct: 191 LEVTRGCVFSCRFCQTPFMFSAKFRHRSVANVRWHVDRMRARGLRDVRFITPTALSYGSQ 250

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY-----LHL 293
             +       +LL S  E  G     +  S P ++    + +   L ++  Y     + +
Sbjct: 251 AEEPNLDAVEELLASCKEGIGPNGRVFFGSFPSEIRPEHV-SRAALRLVKKYCANNNIIV 309

Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
             QSGSDR+L +  R H   E ++   R+  +     I+ D I G PGE++ D   ++ L
Sbjct: 310 GAQSGSDRVLDAAKRGHGVEEVKRAA-RL-GIEEGFRINVDMIFGMPGESEQDVADSLRL 367

Query: 354 VDKIGY--AQAFSFKYSPRLGTP 374
             ++    A+  +  + P  GTP
Sbjct: 368 AGELAEVGARIHAHTFMPLPGTP 390


>gi|239979389|ref|ZP_04701913.1| coproporphyrinogen III oxidase [Streptomyces albus J1074]
 gi|291451264|ref|ZP_06590654.1| coproporphyrinogen III oxidase [Streptomyces albus J1074]
 gi|291354213|gb|EFE81115.1| coproporphyrinogen III oxidase [Streptomyces albus J1074]
          Length = 413

 Score = 42.0 bits (97), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 1/57 (1%)

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351
           +QS    +LK ++RRHT       +   R+   D  ++ D I G PGE+DDD+RA++
Sbjct: 160 MQSARQHVLKVLDRRHTPGRPEACVAEARAAGFD-HVNLDLIYGTPGESDDDWRASL 215


>gi|219670007|ref|YP_002460442.1| radical SAM protein [Desulfitobacterium hafniense DCB-2]
 gi|219540267|gb|ACL22006.1| Radical SAM domain protein [Desulfitobacterium hafniense DCB-2]
          Length = 449

 Score = 42.0 bits (97), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 49/205 (23%), Positives = 91/205 (44%), Gaps = 34/205 (16%)

Query: 185 GCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK 244
           GC   C++C +   + I  ++  ++ VDE  K I       ++  +    W       + 
Sbjct: 167 GCPHHCSYCSL---KKIYHNKLRTRPVDEVIKDIG------SMPNKYFVFW-------DD 210

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDC-------LIKAHGDLDVLMPYLHLPVQS 297
             F+D +Y+ + +K L RL    +       C       L K+ G L     YL L ++S
Sbjct: 211 NFFADPVYTKALLKELARLNKRWAAQVTAYSCEDEELLSLAKSAGCL-----YLFLGLES 265

Query: 298 GSDRILKSMNRRHTAYE-YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
            S++ L+  N+     E Y ++++++   R  I+I +  + GF  +T D F  T+   +K
Sbjct: 266 FSEQGLRDANKNFNKIEEYGKVVNKLH--RHGISIQAGIVFGFDSDTLDVFETTLKACNK 323

Query: 357 IGYAQAFSFKYSPRLGTPGSNMLEQ 381
           IG     +   +P    PG+++ EQ
Sbjct: 324 IGVDGVTASILTP---FPGTSIYEQ 345


>gi|291531040|emb|CBK96625.1| Coproporphyrinogen III oxidase and related Fe-S oxidoreductases
           [Eubacterium siraeum 70/3]
          Length = 480

 Score = 42.0 bits (97), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 36/63 (57%), Gaps = 1/63 (1%)

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
           QS +D +L+++ RRHT  +  +  D  R V  D  I+SD I G P ET+  F A++  + 
Sbjct: 280 QSMNDSVLEAVGRRHTVKQVCEAFDIARKVGFD-CINSDIIAGLPAETEHSFEASLQQLC 338

Query: 356 KIG 358
           K+ 
Sbjct: 339 KLS 341


>gi|281412626|ref|YP_003346705.1| Radical SAM domain protein [Thermotoga naphthophila RKU-10]
 gi|281373729|gb|ADA67291.1| Radical SAM domain protein [Thermotoga naphthophila RKU-10]
          Length = 551

 Score = 42.0 bits (97), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 54/251 (21%), Positives = 102/251 (40%), Gaps = 34/251 (13%)

Query: 180 LTIQEGCDK--FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR- 236
           + +  GC++  FC+FC  P   G   SR +  ++ E   L   G C     G+  N    
Sbjct: 178 IEVSRGCERRTFCSFCTEPLLHGRLKSRDVQAILKEIESLYMTG-CRAFRFGRAANILAF 236

Query: 237 GKGLDGEKCT---FSDLLYSLSEIKGLVRL--------RYTTSHPRD---MSDCLIKAHG 282
           G   +G K +     +L     E+   + +         Y  +H R+   + + +++ + 
Sbjct: 237 GSDRNGGKPSPEILEELYSGTREVAPHLEVLHTDNANPSYLVTHERECRKIVETIVRYNT 296

Query: 283 DLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ---IIDRIRSVR----PDIAISSDF 335
             DV        V+S  + +LK  N + +  E+ +   +++ I  VR    P +    + 
Sbjct: 297 PGDV----FSFGVESFDESVLKKNNIQGSPEEFLKAIAVVNEIGGVRVDGIPKLLPGVNL 352

Query: 336 IVGFPGETDDDFRATMDLVDKI---GYA--QAFSFKYSPRLGTPGSNMLEQVDENVKAER 390
           I G PGET++  +     + +I   GY   +    K     GTP    L+     +K+  
Sbjct: 353 IFGLPGETEETLKKNYSYLKRILEEGYLLRRINIRKLLAYPGTPVYEYLKNKKHRIKSHL 412

Query: 391 LLCLQKKLREQ 401
               ++K+RE+
Sbjct: 413 HEQWKRKIREE 423


>gi|327401312|ref|YP_004342151.1| Radical SAM domain-containing protein [Archaeoglobus veneficus
           SNP6]
 gi|327316820|gb|AEA47436.1| Radical SAM domain protein [Archaeoglobus veneficus SNP6]
          Length = 482

 Score = 42.0 bits (97), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 59/275 (21%), Positives = 125/275 (45%), Gaps = 38/275 (13%)

Query: 175 GVTAFLTIQEGCDKFCTFCVVP--YT----RGIEISRSLSQVVDEARKLIDNGVCEITLL 228
           G    L +  GC + C+FC+V   Y+    R +++   L ++ + A+K +D    ++ L+
Sbjct: 183 GECYLLEVGRGCKRACSFCIVRQIYSPCRWRDVKL---LLEIAEGAKKFVD----KVALV 235

Query: 229 GQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLM 288
             +V        D  K    +L+ SL ++  LV      +   D     + + G L+ L 
Sbjct: 236 APSVT-------DHPKA--KELIASLIDMGFLVSPSSVRADTLDEELVELLSRGGLESLT 286

Query: 289 PYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFR 348
               +  ++GS+R ++ + R+  + E       + +      +   F+VG PGE+ +D R
Sbjct: 287 ----IAPEAGSER-MRRLLRKGISEEDVLNAASLAAKHGIEKVKMYFMVGLPGESHEDVR 341

Query: 349 ATMDLVDKI-GYAQAFSFKYSPRLGTPGSNM-------LEQVDENVKA--ERLLCLQKKL 398
           A ++LVD++       S   +P +  P + +       ++ V   +KA  E++  L+K+L
Sbjct: 342 AIVELVDRVKKLVPRVSVSINPLVPKPHTPLQWEPFGGIDDVKAGMKALKEKIRFLKKEL 401

Query: 399 REQQVSFN-DACVGQIIEVLIEKHGKEKGKLVGRS 432
             +  S + ++     I+ ++ +  KE G+ +  +
Sbjct: 402 GRKGASVSAESAESFAIQTILSRGNKEVGRAIAEN 436


>gi|194335071|ref|YP_002016931.1| radical SAM domain-containing protein [Prosthecochloris aestuarii
           DSM 271]
 gi|194312889|gb|ACF47284.1| Radical SAM domain protein [Prosthecochloris aestuarii DSM 271]
          Length = 473

 Score = 42.0 bits (97), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 66/277 (23%), Positives = 109/277 (39%), Gaps = 40/277 (14%)

Query: 103 VVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKF-- 160
           +++ G         ILR  P V+ +   +    L E LE+      V    Y   D    
Sbjct: 105 IILGGSGPAGVAAHILRAFPAVDCIFCGEGEAALLEFLEKNGDPSSVAGVVYREGDSIVE 164

Query: 161 ----ERLSIVD----GGYN---RKRGVTAFLTIQEGCDKFCTFCVVP--YTRGIEISRSL 207
               +R+S +D      Y+     R     ++   GC   C FC  P  + +G+ + RSL
Sbjct: 165 NPARKRISDLDVLPVPAYDLIDMDRYAVVNVSTSRGCPYRCAFCESPAFWGKGV-VYRSL 223

Query: 208 SQVVDEARKLIDNGVC-EITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
             V++E R+L       +I L      A R +  +  +   S+ L            R+ 
Sbjct: 224 DNVMNEIRELRTRWAKRQINLCDDTFVARRPRVEEFCRRVISEKL----------DFRWE 273

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPY-----LHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
                D+ D       DL  LM       +   V+SGSD +L  +++R T    R +I +
Sbjct: 274 CFARVDLVD------PDLMKLMAEAGCSGVFFGVESGSDSVLSRIDKRFTVARARDVISQ 327

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
              + P +  S  F+ G P ET +DF  ++ L+ + G
Sbjct: 328 AVKIFPHVYTS--FVWGLPFETMEDFYDSILLMTEFG 362


>gi|224535950|ref|ZP_03676489.1| hypothetical protein BACCELL_00814 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224522438|gb|EEF91543.1| hypothetical protein BACCELL_00814 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 337

 Score = 42.0 bits (97), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 67/143 (46%), Gaps = 17/143 (11%)

Query: 247 FSDLLYSLSEIKGLVRLRYTT--SHPRDMSDCLIKAHGDLDVLMPY--LHLPVQSGSDRI 302
           F ++  ++ ++ G+      T  ++P D+++  I   G L  L P+  + + +Q+  D  
Sbjct: 31  FKEVFKTIEQVYGMREATEITLEANPDDLTEEYI---GMLHTL-PFNRISMGIQTFDDAT 86

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG---- 358
           L+ +NRRH A +  + + R R       IS D I G PGET+   R   DL   +     
Sbjct: 87  LQLLNRRHNATQAIEAVKRCRQAGFQ-NISIDLIYGLPGETEQ--RWAQDLQQAVSLDVE 143

Query: 359 YAQAFSFKYSPRLGTPGSNMLEQ 381
           +  A+   Y    GTP   ML+Q
Sbjct: 144 HISAYHLIYEE--GTPLYKMLQQ 164


>gi|330837390|ref|YP_004412031.1| Radical SAM domain-containing protein [Spirochaeta coccoides DSM
           17374]
 gi|329749293|gb|AEC02649.1| Radical SAM domain protein [Spirochaeta coccoides DSM 17374]
          Length = 333

 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 20/69 (28%), Positives = 38/69 (55%), Gaps = 2/69 (2%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +  + +QS +D  L+ M+R H +  +   + R+ S    I + +  I+G+PGE  DD+  
Sbjct: 173 WAEIGLQSANDATLRRMSRGHGSSGFIPAVKRLHS--RGIGVCAHLILGYPGERWDDYEK 230

Query: 350 TMDLVDKIG 358
           T+ +V+  G
Sbjct: 231 TVSMVNDSG 239


>gi|315922434|ref|ZP_07918674.1| coproporphyrinogen III oxidase [Bacteroides sp. D2]
 gi|313696309|gb|EFS33144.1| coproporphyrinogen III oxidase [Bacteroides sp. D2]
          Length = 335

 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 73/163 (44%), Gaps = 21/163 (12%)

Query: 254 LSEIKGLVRLRYTTSHPRDMS-----DCLIKAHGDLDVLMPY--LHLPVQSGSDRILKSM 306
             +I   +R  Y  SH ++++     D L   +  +   +P+  + + +Q+  D  LK +
Sbjct: 29  FEQIFDTIRTHYGLSHCQEITLEANPDDLTSEYLKMLSSLPFNRISMGIQTFDDPTLKLL 88

Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGET----DDDFRATMDLVDKIGYAQA 362
            RRH A+   + + R R       IS D I G PGET    ++D R  + L   + +  A
Sbjct: 89  KRRHNAHTAIEAVHRCREAGFQ-NISIDLIYGLPGETKERWENDLRQAVSL--NVEHISA 145

Query: 363 FSFKYSPRLGTPGSNMLEQ-----VDENVKAERLLCLQKKLRE 400
           +   Y     TP  NML+Q     VDE+   +    L + L++
Sbjct: 146 YHLIYEE--DTPIYNMLKQHQISEVDEDSSLDFFTLLIEHLQK 186


>gi|291557494|emb|CBL34611.1| Coproporphyrinogen III oxidase and related Fe-S oxidoreductases
           [Eubacterium siraeum V10Sc8a]
          Length = 480

 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 33/56 (58%), Gaps = 1/56 (1%)

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351
           QS +D +L+++ RRHT  +  +  D  R V  D  I+SD I G P ET+  F A++
Sbjct: 280 QSMNDSVLEAVGRRHTVKQVCEAFDIARKVGFD-CINSDIIAGLPAETEHSFEASL 334


>gi|270308707|ref|YP_003330765.1| radical SAM/B12 binding domain protein [Dehalococcoides sp. VS]
 gi|270154599|gb|ACZ62437.1| radical SAM/B12 binding domain protein [Dehalococcoides sp. VS]
          Length = 494

 Score = 42.0 bits (97), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 47/200 (23%), Positives = 82/200 (41%), Gaps = 22/200 (11%)

Query: 180 LTIQEGCDKFCTFCV-VPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRG 237
           L    GC   C+FC  +P+ +G     S+ ++V +   L  N  V  I     N    R 
Sbjct: 187 LNTSRGCPFKCSFCYNIPFHQGHRADLSVERIVSQIEHLQKNYKVKFIRFFEDNFTFNRR 246

Query: 238 KGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSD---CLIKAHGDLDVLMPYLHLP 294
           +  +          +  + I+  +++++ T    DMS+    L+   G   V      + 
Sbjct: 247 RMRE----------FCRTIIERRIKIKWDTESRADMSEEDVALMAKAGCTSV-----GIG 291

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           V++GS R+L+ +N+     E      R   VR  I      ++  P ET  DF+ T D++
Sbjct: 292 VETGSKRMLEYLNKGIDLDEMGHTFWRF--VRHGIMPRLYIMLAVPSETPADFKETQDML 349

Query: 355 DKIGYAQAFSFKYSPRLGTP 374
            K+        ++ P  GTP
Sbjct: 350 RKMEDPPFMYMRFVPYPGTP 369


>gi|302808877|ref|XP_002986132.1| hypothetical protein SELMODRAFT_446506 [Selaginella moellendorffii]
 gi|300145991|gb|EFJ12663.1| hypothetical protein SELMODRAFT_446506 [Selaginella moellendorffii]
          Length = 936

 Score = 42.0 bits (97), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 37/169 (21%), Positives = 66/169 (39%), Gaps = 23/169 (13%)

Query: 172 RKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQN 231
           RK      + I  GC   CT+C   + RG   S ++  +V   + ++  G      +G N
Sbjct: 41  RKNKFVEIIPINVGCLGACTYCKTKHARGHLGSYTVDTLVQRLKTVVSEG----RDIGAN 96

Query: 232 VNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL 291
           +                  L          R +Y  S   ++       +G    +  +L
Sbjct: 97  I----------------PALLRALVAALPHRQKYNAS---NLHLTASGGNGCHPCVYLFL 137

Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFP 340
           H+ VQSG D +L+ M R +T  E+R+I+D +  + P+    +  +   P
Sbjct: 138 HVLVQSGRDSVLQGMKREYTFSEFRKIVDTLTRLVPETGTPAALMKRVP 186


>gi|270307544|ref|YP_003329602.1| radical SAM/B12 binding domain protein [Dehalococcoides sp. VS]
 gi|270153436|gb|ACZ61274.1| radical SAM/B12 binding domain protein [Dehalococcoides sp. VS]
          Length = 494

 Score = 42.0 bits (97), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 47/200 (23%), Positives = 82/200 (41%), Gaps = 22/200 (11%)

Query: 180 LTIQEGCDKFCTFCV-VPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRG 237
           L    GC   C+FC  +P+ +G     S+ ++V +   L  N  V  I     N    R 
Sbjct: 187 LNTSRGCPFKCSFCYNIPFHQGHRADLSVERIVSQIEHLQKNYKVKFIRFFEDNFTFNRR 246

Query: 238 KGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSD---CLIKAHGDLDVLMPYLHLP 294
           +  +          +  + I+  +++++ T    DMS+    L+   G   V      + 
Sbjct: 247 RMRE----------FCRTIIERRIKIKWDTESRADMSEEDVALMAKAGCTSV-----GIG 291

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           V++GS R+L+ +N+     E      R   VR  I      ++  P ET  DF+ T D++
Sbjct: 292 VETGSKRMLEYLNKGIDLDEMGHTFWRF--VRHGIMPRLYIMLAVPSETPADFKETQDML 349

Query: 355 DKIGYAQAFSFKYSPRLGTP 374
            K+        ++ P  GTP
Sbjct: 350 RKMEDPPFMYMRFVPYPGTP 369


>gi|284928663|ref|YP_003421185.1| Fe-S oxidoreductase [cyanobacterium UCYN-A]
 gi|284809122|gb|ADB94827.1| Fe-S oxidoreductase [cyanobacterium UCYN-A]
          Length = 533

 Score = 42.0 bits (97), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 62/264 (23%), Positives = 116/264 (43%), Gaps = 47/264 (17%)

Query: 185 GCDKFCTFCVVPYT----RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL 240
            C + C FC+V Y     R  +++ SL   +++  K+ +     I LLG ++        
Sbjct: 232 SCPEMCRFCLVSYLNLPFRIADLNTSLIPNIEKGLKVTN----RIGLLGPSIT------- 280

Query: 241 DGEKCTFSDLLYSLSEIK-GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
             +   F +LL  L++ K   +R+   +     +++ L K           + + V+SGS
Sbjct: 281 --QHPEFGNLLNYLNQPKYDDIRVSIASVRANTVTEKLAKLLSSRKTKS--ITIAVESGS 336

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDF----IVGFPGETDDDFRATMDLVD 355
            +I K++N++    +  +II    ++   I    +     +VG PGE ++D   T+ ++D
Sbjct: 337 PKIRKNINKK---LDNDEIISA--AINAKIGGLKNLKLYGMVGLPGENEEDIEQTISMLD 391

Query: 356 KI-GYAQAFSFKYS-----PRLGTP----GSNMLEQVDENVKAERLLCLQKKLREQQVSF 405
            I   AQ     +      P+  TP    G N L Q       +RL  L+K L ++++ F
Sbjct: 392 SIQKAAQGLKITFGCSTFVPKAHTPFQWLGVNKLSQ-------KRLKFLEKVLGKRRIEF 444

Query: 406 N-DACVGQIIEVLIEKHGKEKGKL 428
             ++    II+ LI +  +   KL
Sbjct: 445 RPESYNWSIIQALISRGDRRLSKL 468


>gi|225017250|ref|ZP_03706442.1| hypothetical protein CLOSTMETH_01176 [Clostridium methylpentosum
           DSM 5476]
 gi|224950025|gb|EEG31234.1| hypothetical protein CLOSTMETH_01176 [Clostridium methylpentosum
           DSM 5476]
          Length = 494

 Score = 42.0 bits (97), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 38/60 (63%), Gaps = 7/60 (11%)

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDR---IRSVRPDIAISSDFIVGFPGETDDDFRATMD 352
           QS +DR+L+ + RRHTA   RQ++D     RSV  + +I+ D I G PG+T + F  T++
Sbjct: 289 QSFNDRVLEQVGRRHTA---RQVVDAYHLARSVGFE-SINMDLIAGLPGDTLESFERTVE 344


>gi|124027620|ref|YP_001012940.1| Fe-S oxidoreductase [Hyperthermus butylicus DSM 5456]
 gi|123978314|gb|ABM80595.1| predicted Fe-S oxidoreductase [Hyperthermus butylicus DSM 5456]
          Length = 453

 Score = 42.0 bits (97), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 51/212 (24%), Positives = 90/212 (42%), Gaps = 11/212 (5%)

Query: 170 YNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEA-RKLIDNGVCEITLL 228
           ++R+  +   + I  GC   C FC VP+     +      VV+EA R  +  G   I  +
Sbjct: 160 HSRRYRLYPPIEIMRGCPFRCRFCQVPWLFKARVRYRSPSVVEEAVRDYVAAGKKHIRFV 219

Query: 229 GQNVNAWRGKGLDGEKC--TFSDLLYSLSEIKGLVRLRYTTSH--PRDMSDCLIKAHGDL 284
                A+  +   GE       +LL ++    G+  L    S   P  ++  +++    L
Sbjct: 220 APIGFAYMSR-RPGEPNVEAIEELLTAVRRAGGIPYLGTFPSETRPEYVTPEVLEVVKRL 278

Query: 285 DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETD 344
                 + L +QSG +R+L+  +R HT  +  + ++ +  VR       D + G PGE +
Sbjct: 279 AANR-RIALGLQSGDNRVLEVSDRGHTVEQVFEAVELV--VRYGFRPVVDILFGLPGEDE 335

Query: 345 DDFRATMDLVDKIGY--AQAFSFKYSPRLGTP 374
           +    T+D + K+    AQ     + P  GTP
Sbjct: 336 EAVEKTVDAMYKLAEMGAQLRLHTFIPLPGTP 367


>gi|159041666|ref|YP_001540918.1| radical SAM domain-containing protein [Caldivirga maquilingensis
           IC-167]
 gi|157920501|gb|ABW01928.1| Radical SAM domain protein [Caldivirga maquilingensis IC-167]
          Length = 470

 Score = 42.0 bits (97), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 52/207 (25%), Positives = 85/207 (41%), Gaps = 23/207 (11%)

Query: 185 GCDKFCTFCVVPYTRGIEIS-RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
           GC   C+FC   Y  G  I  RS   V DE    ++         G N   +        
Sbjct: 205 GCPYGCSFCSTSYYWGRLIRYRSAKNVADEIEDAVNK-------YGANTIVFTDDEFTLG 257

Query: 244 KCTFSDLLYSLSEIKGLVRL----RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
           K    + L  L E K  +      R  T   + MS+ L   HG        L+  V+S S
Sbjct: 258 KRFVYEFLRELEERKLDINFSCGSRVDTIDKKMMSELL--RHG-----CTALYFGVESAS 310

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
              +  + ++ T  +  ++ + +  ++ + A++S F++GFP ET DD + T     K+  
Sbjct: 311 QDTINRIGKKITIEQAIKVFEWVHELKVN-AVAS-FVIGFPWETIDDMKNTAKFAVKLNP 368

Query: 360 AQAFSFKYSPRLGTPGSNMLEQVDENV 386
           + A     +P  GTP     + V+EN+
Sbjct: 369 SYAQFTVATPYPGTP--LYYQAVNENL 393


>gi|282861821|ref|ZP_06270885.1| oxygen-independent coproporphyrinogen III oxidase [Streptomyces sp.
           ACTE]
 gi|282563637|gb|EFB69175.1| oxygen-independent coproporphyrinogen III oxidase [Streptomyces sp.
           ACTE]
          Length = 413

 Score = 42.0 bits (97), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 29/116 (25%), Positives = 53/116 (45%), Gaps = 6/116 (5%)

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           +QS    +LK ++R HT       +   R+   +  ++ D I G PGE+DDD+RA++D  
Sbjct: 160 MQSARQHVLKILDRTHTPGRPEACVAEARAAGFE-HVNLDLIYGTPGESDDDWRASLDAA 218

Query: 355 DKIGYAQAFSFKYSPRLGTPGSNMLEQ-----VDENVKAERLLCLQKKLREQQVSF 405
              G     ++      GT  +  + +      D++V A+R L   + +     S+
Sbjct: 219 IGAGPDHVSAYALIVEEGTQLARRIRRGEVPMTDDDVHADRYLIADEAMAAAGFSW 274


>gi|238918556|ref|YP_002932070.1| hypothetical protein NT01EI_0606 [Edwardsiella ictaluri 93-146]
 gi|238868124|gb|ACR67835.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
          Length = 301

 Score = 42.0 bits (97), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 2/69 (2%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +L L +QS S++ L+ +NR H    Y++     R+    + + S  IVG PGET  D  +
Sbjct: 141 WLELGLQSASEKTLRRINRGHDFACYQRTTRAARA--RGLKVCSHLIVGLPGETQADCLS 198

Query: 350 TMDLVDKIG 358
           T+  V + G
Sbjct: 199 TLQRVVETG 207


>gi|302534347|ref|ZP_07286689.1| coproporphyrinogen III oxidase [Streptomyces sp. C]
 gi|302443242|gb|EFL15058.1| coproporphyrinogen III oxidase [Streptomyces sp. C]
          Length = 416

 Score = 42.0 bits (97), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 29/116 (25%), Positives = 54/116 (46%), Gaps = 6/116 (5%)

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           +QS    +LK ++R HT       +   R+   +  ++ D I G PGE+DDD+RA+++  
Sbjct: 163 MQSARQHVLKVLDRTHTPGRPEACVAEARAAGFE-HVNLDLIYGTPGESDDDWRASLEAA 221

Query: 355 DKIGYAQAFSFKYSPRLGTPGSNMLEQ-----VDENVKAERLLCLQKKLREQQVSF 405
              G     ++      GT  +  + +      D++V A+R L   + + E   S+
Sbjct: 222 LGAGPDHVSAYALIVEEGTQLARRIRRGEVPMTDDDVHADRYLIADQVMAEAGYSW 277


>gi|288940795|ref|YP_003443035.1| hypothetical protein Alvin_1064 [Allochromatium vinosum DSM 180]
 gi|288896167|gb|ADC62003.1| conserved hypothetical protein [Allochromatium vinosum DSM 180]
          Length = 324

 Score = 42.0 bits (97), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 2/69 (2%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +L L +QS +D  L+ +NR H   EYR  +    + R  I + +  IVG PGE   +   
Sbjct: 152 WLELGLQSANDDTLERVNRGHGFAEYRSAV--TAAHRRGIPVCAHLIVGLPGEGHAEALT 209

Query: 350 TMDLVDKIG 358
           T+D V ++G
Sbjct: 210 TLDRVLELG 218


>gi|313618877|gb|EFR90746.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Listeria innocua FSL S4-378]
          Length = 385

 Score = 42.0 bits (97), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 3/84 (3%)

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
           ++P D+S   ++A  D  V    + + VQS ++ +LK + R HT  +  Q ++ +R V  
Sbjct: 104 ANPGDLSISKLQAMQDHGV--NRISMGVQSFNNELLKKIGRIHTVKDVYQSVENMRKVGF 161

Query: 328 DIAISSDFIVGFPGETDDDFRATM 351
           +  +S D I   PG+T+ DF+ T+
Sbjct: 162 E-NVSIDLIFSLPGQTEADFKDTL 184


>gi|297626073|ref|YP_003687836.1| Coproporphyrinogen oxidase / Oxygen-independent coproporphyrinogen
           III oxidase [Propionibacterium freudenreichii subsp.
           shermanii CIRM-BIA1]
 gi|296921838|emb|CBL56398.1| Coproporphyrinogen oxidase / Oxygen-independent coproporphyrinogen
           III oxidase [Propionibacterium freudenreichii subsp.
           shermanii CIRM-BIA1]
          Length = 399

 Score = 42.0 bits (97), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 56/118 (47%), Gaps = 20/118 (16%)

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR-PDIAISSDFIVGFPGETDDDFRA 349
           L L +QS  +++L  ++R HT     Q+      V  PD+++  D I G PGE+ D +RA
Sbjct: 146 LSLGMQSADEQVLARLDRHHTPGRALQVARWAHEVGFPDVSL--DLIYGTPGESLDSWRA 203

Query: 350 TMD--------------LVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLC 393
           T+D              L+ + G A A   ++   L  P  +   + DE + AER+L 
Sbjct: 204 TLDAALGVAPEHLSAYSLIVEEGTALARRIRHG-ELAMPDEDA--EADEYLLAERMLS 258


>gi|325289664|ref|YP_004265845.1| Radical SAM domain protein [Syntrophobotulus glycolicus DSM 8271]
 gi|324965065|gb|ADY55844.1| Radical SAM domain protein [Syntrophobotulus glycolicus DSM 8271]
          Length = 454

 Score = 42.0 bits (97), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 58/248 (23%), Positives = 100/248 (40%), Gaps = 42/248 (16%)

Query: 174 RGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVN 233
           RG++  + I  GC   CTFC V  T G +      +                 LL + + 
Sbjct: 209 RGIS--MLISRGCPFPCTFCAVHQTMGKKWRIKAPE-----------------LLVEEII 249

Query: 234 AWRGKGLDGEKCTFSDLLYSLSEI------KGLVRLRYTTSHPRDMSDCLIKAHGDLDVL 287
           A R +    E   F D +++++ +      K L+  +   S   +    LIK   +L ++
Sbjct: 250 ATRDR-YQLEGIWFKDSIFNMNPVWTREFCKLLIEKKAGISWQANTRIDLIK-EDELKLM 307

Query: 288 ----MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGET 343
               +  +   ++SGS R L  + +  T     QI + I   R  + +   F++G PGE 
Sbjct: 308 REAGLTQIDFGIESGSRRSLARLKKNITI---EQIKENINLARQYVKVFGFFMIGIPGEE 364

Query: 344 DDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQV 403
           + D   T +L   +   ++    YSP    PGS + +++    K E       KL  +Q+
Sbjct: 365 ESDVLETFELAKDLELDRSTWSIYSP---LPGSTLYDELIAEGKIEPY-----KLDFEQI 416

Query: 404 SFNDACVG 411
            F  A  G
Sbjct: 417 HFTKAYEG 424


>gi|294792130|ref|ZP_06757278.1| putative Fe-S oxidoreductase [Veillonella sp. 6_1_27]
 gi|294457360|gb|EFG25722.1| putative Fe-S oxidoreductase [Veillonella sp. 6_1_27]
          Length = 475

 Score = 41.6 bits (96), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 40/177 (22%), Positives = 79/177 (44%), Gaps = 16/177 (9%)

Query: 186 CDKFCTFCVVPY------TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
           CD  C +C  PY          +  R+L++ +++ + ++D+    +  L      + G G
Sbjct: 162 CDTRCVYCSFPYGLYQDYAGKSQFLRALNRDIEDMKSIVDSYNLTVDTL------YMGGG 215

Query: 240 LDG--EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQS 297
                E   F  +L  LS I       +T    R  S   +K    L++ +  + +  Q+
Sbjct: 216 TPTVLEDEDFHQVLKLLS-ILVPEGHEFTVEAGRPDSVNPVKLQSMLELGVNRISINPQT 274

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
             D IL+ + R H+A++  +++  +++    +A++ DFI G P +T  +    MD V
Sbjct: 275 MQDDILRRIGRGHSAWDIDELLQYVKN-NTSLAVNMDFIAGLPNQTMSNMIENMDYV 330


>gi|258541612|ref|YP_003187045.1| radical S-adenosylmethionine (SAM) protein [Acetobacter
           pasteurianus IFO 3283-01]
 gi|256632690|dbj|BAH98665.1| radical S-adenosylmethionine (SAM) protein [Acetobacter
           pasteurianus IFO 3283-01]
 gi|256635747|dbj|BAI01716.1| radical S-adenosylmethionine (SAM) protein [Acetobacter
           pasteurianus IFO 3283-03]
 gi|256638802|dbj|BAI04764.1| radical S-adenosylmethionine (SAM) protein [Acetobacter
           pasteurianus IFO 3283-07]
 gi|256641856|dbj|BAI07811.1| radical S-adenosylmethionine (SAM) protein [Acetobacter
           pasteurianus IFO 3283-22]
 gi|256644911|dbj|BAI10859.1| radical S-adenosylmethionine (SAM) protein [Acetobacter
           pasteurianus IFO 3283-26]
 gi|256647966|dbj|BAI13907.1| radical S-adenosylmethionine (SAM) protein [Acetobacter
           pasteurianus IFO 3283-32]
 gi|256651019|dbj|BAI16953.1| radical S-adenosylmethionine (SAM) protein [Acetobacter
           pasteurianus IFO 3283-01-42C]
 gi|256654010|dbj|BAI19937.1| radical S-adenosylmethionine (SAM) protein [Acetobacter
           pasteurianus IFO 3283-12]
          Length = 447

 Score = 41.6 bits (96), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 56/213 (26%), Positives = 93/213 (43%), Gaps = 25/213 (11%)

Query: 185 GCDKFCTFCVVP-YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
           GC   C FC    Y  G    R + ++V+E  KLI N        G++          G+
Sbjct: 178 GCPFVCDFCSERFYLGGRYRWRPVDEMVNEL-KLIKNRGSHF-FFGES-------NFGGK 228

Query: 244 KCTFSDLLYSLSEIKGLVRL--RYTTSHPRDMSDCLIKAHGDLDVLMPYLH--LPVQSGS 299
           K    +L+      +GLV L  R++T    ++  CL K   DL      +H  + ++S  
Sbjct: 229 KSRAMELM------EGLVPLGIRWSTLWSSNL--CLDKEFLDLARKSGVMHVNIGIESID 280

Query: 300 DRILKSMNR-RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
             IL  M +  + A  Y ++ + +R    DI+ S +FI GF  E  D +RAT+  +++  
Sbjct: 281 KDILDGMRKGWNKASRYHEMFENLRQR--DISYSLNFIFGFDDEDHDIYRATISFLEEHK 338

Query: 359 YAQAFSFKYSPRLGTPGSNMLEQVDENVKAERL 391
              A+    +P  GT   N +E+    + A  +
Sbjct: 339 VPAAYFNILTPTKGTALFNRMEKAGRIINAPEI 371


>gi|154497024|ref|ZP_02035720.1| hypothetical protein BACCAP_01317 [Bacteroides capillosus ATCC
           29799]
 gi|150273423|gb|EDN00551.1| hypothetical protein BACCAP_01317 [Bacteroides capillosus ATCC
           29799]
          Length = 493

 Score = 41.6 bits (96), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 47/88 (53%), Gaps = 7/88 (7%)

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIR-SVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           QS SD++L++M R HTA +  +  + +R S  P   ++ D I G P ++ + FR+T+D V
Sbjct: 293 QSMSDKVLRAMGRSHTAADILRAYELVRNSGIP--CVNMDLIAGLPEDSREGFRSTLDQV 350

Query: 355 DKIGYA----QAFSFKYSPRLGTPGSNM 378
             +  A       + K   RL T G ++
Sbjct: 351 LSMDPANITVHTLALKKGSRLMTEGGSL 378


>gi|147668926|ref|YP_001213744.1| radical SAM domain-containing protein [Dehalococcoides sp. BAV1]
 gi|146269874|gb|ABQ16866.1| Radical SAM domain protein [Dehalococcoides sp. BAV1]
          Length = 494

 Score = 41.6 bits (96), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 49/219 (22%), Positives = 92/219 (42%), Gaps = 25/219 (11%)

Query: 180 LTIQEGCDKFCTFCV-VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK 238
           L    GC   C+FC  +P+ +G     S+ +++ +   L  N   +     ++   +  K
Sbjct: 187 LNTSRGCPFKCSFCYNIPFHQGHRADLSVERIIAQIEHLQKNYKVKFIRFFEDNFTFNRK 246

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSD---CLIKAHGDLDVLMPYLHLPV 295
            +  E C         + I+  +++++ T    DMS+    L+   G   V      + V
Sbjct: 247 RMR-EFCQ--------TVIERRIKIKWDTESRADMSEEDVALMAKAGCTSV-----GIGV 292

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRI--RSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
           ++GS R+L+ +N+     E  +   R     + P + I    ++  P ET +DF  T D+
Sbjct: 293 ETGSKRMLEYLNKGVDLDEMGRTFWRFVKHGIMPRLYI----MLAVPTETVEDFTETQDM 348

Query: 354 VDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLL 392
           + ++        ++ P  GTP  N L Q D  +K    L
Sbjct: 349 LHRMEDPPFMYMRFVPYPGTPLYNQLVQ-DNRIKPPESL 386


>gi|329946957|ref|ZP_08294369.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Actinomyces sp. oral taxon 170 str. F0386]
 gi|328526768|gb|EGF53781.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Actinomyces sp. oral taxon 170 str. F0386]
          Length = 411

 Score = 41.6 bits (96), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 21/64 (32%), Positives = 36/64 (56%), Gaps = 2/64 (3%)

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           +QS    +LK + R H      +++D  R  R  ++ S D I G PGE+ +D++ ++D V
Sbjct: 146 MQSAVPHVLKVLERTHEPARVPRVVDWAR--RAGLSTSLDLIYGAPGESLEDWQRSLDAV 203

Query: 355 DKIG 358
            +IG
Sbjct: 204 TQIG 207


>gi|253702142|ref|YP_003023331.1| radical SAM protein [Geobacter sp. M21]
 gi|251776992|gb|ACT19573.1| Radical SAM domain protein [Geobacter sp. M21]
          Length = 488

 Score = 41.6 bits (96), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 55/201 (27%), Positives = 89/201 (44%), Gaps = 14/201 (6%)

Query: 155 SVEDKFERLSIVDGGY-NRKRGVTAFLTIQEGCDKFCTFCVV-PYTRGIEISRSLSQVVD 212
           S+   +E L   D  Y     G  A +    GCD  C FC    + R     R   +V++
Sbjct: 179 SLAPAWELLDWNDYNYLVAPAGTMASILTSRGCDMECAFCSQRMFWREDWRCRKPEKVIE 238

Query: 213 EARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPR 271
           E   LID  GV   TL    ++A+  K  +  +  F DL+    E K  V L   T    
Sbjct: 239 EMVHLIDEYGVSFFTL----IDAYPTKHRERWEL-FLDLVI---ERKLGVHLLIETRVED 290

Query: 272 DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAI 331
            + D  I  H   D  + +++L  +S    +L S+N+  +  + ++ +D +R  +  I  
Sbjct: 291 IIRDRDI-LHKYRDAGIIHVYLGAESADKDVLGSLNKGTSFEQNKEALDLLREAQ--IIT 347

Query: 332 SSDFIVGFPGETDDDFRATMD 352
            + F++GFP ET D  + T+D
Sbjct: 348 EASFMIGFPTETWDSIQNTID 368


>gi|189423119|ref|YP_001950296.1| radical SAM protein [Geobacter lovleyi SZ]
 gi|189419378|gb|ACD93776.1| conserved hypothetical radical SAM protein [Geobacter lovleyi SZ]
          Length = 318

 Score = 41.6 bits (96), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 2/67 (2%)

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
           L L +QS  D IL+ +NR H+  ++   + R      DI   +  I GFPGE  ++F  +
Sbjct: 153 LELGLQSADDAILEQINRGHSLDDFITAVKRASGRGLDIC--AHLIYGFPGEQPEEFVKS 210

Query: 351 MDLVDKI 357
            DL+D +
Sbjct: 211 ADLLDSL 217


>gi|218883961|ref|YP_002428343.1| Radical SAM domain protein [Desulfurococcus kamchatkensis 1221n]
 gi|218765577|gb|ACL10976.1| Radical SAM domain protein [Desulfurococcus kamchatkensis 1221n]
          Length = 521

 Score = 41.6 bits (96), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 60/258 (23%), Positives = 102/258 (39%), Gaps = 55/258 (21%)

Query: 140 LERARFGKRVVDTDYSVEDKFERLS--IVDGGYNRKRGVTAFLTIQEGCDKF----CTFC 193
            E+AR    ++  DY + DK  RL   IV    N  R +   +    GC ++    C+FC
Sbjct: 153 FEKAR--PWLLREDYELADKAFRLGAKIVLQHPNYGRNLVVEIETYRGCSRWITGGCSFC 210

Query: 194 VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQ-NVNAWRGKGLDGEKCTFSDLLY 252
           + P   G  + RSL  +++E   L   GV  I L  Q ++ A+  + +  +     D   
Sbjct: 211 IEP-RHGRPLMRSLKGIIEEVEALYRLGVRHIRLGKQPDILAYMARDIGKQVFPRPDPEV 269

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT- 311
                +G+          R+++  LI  H D       +H P +S   RILK++ + HT 
Sbjct: 270 IERLFQGI----------RNVAPGLITLHIDNVNPGTIVHYPEES--IRILKTIVKYHTP 317

Query: 312 ---------------------------AYEYRQIIDRIRSVR-----PDIAISSDFIVGF 339
                                      A E  ++I+R+   R     P +    + I G 
Sbjct: 318 GDVAALGIESFDEKVVNINNLKVYPDEALEAIRLINRVGRERGWNGMPHLLPGINLIYGL 377

Query: 340 PGETDDDFRATMDLVDKI 357
           PGE+ + +   ++ + KI
Sbjct: 378 PGESRNTYHMNLEYLTKI 395


>gi|16800581|ref|NP_470849.1| coproporphyrinogen III oxidase [Listeria innocua Clip11262]
 gi|16413986|emb|CAC96744.1| hemN [Listeria innocua Clip11262]
          Length = 385

 Score = 41.6 bits (96), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 3/84 (3%)

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
           ++P D+S   ++A  D  V    + + VQS ++ +LK + R HT  +  Q ++ +R V  
Sbjct: 104 ANPGDLSISKLQAMQDHGV--NRISMGVQSFNNELLKKIGRIHTVKDVYQSVENMRKVGF 161

Query: 328 DIAISSDFIVGFPGETDDDFRATM 351
           +  +S D I   PG+T+ DF+ T+
Sbjct: 162 E-NVSIDLIFSLPGQTEADFKDTL 184


>gi|312792970|ref|YP_004025893.1| Radical SAM domain-containing protein [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312180110|gb|ADQ40280.1| Radical SAM domain protein [Caldicellulosiruptor kristjanssonii
           177R1B]
          Length = 471

 Score = 41.6 bits (96), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 42/192 (21%), Positives = 88/192 (45%), Gaps = 23/192 (11%)

Query: 190 CTFCVVPY--TRGIEISRSLSQVVDEARKLI----DNGVCEITLLGQNVNAWRGK----- 238
           C +  +P   T+ +  S S  ++  + + LI    D+ +CE+    Q +   + +     
Sbjct: 157 CLYIGIPICPTKCLYCSFSCHEITRQVKSLIGMYTDSLICELEKTYQKIEENKNRIVAIY 216

Query: 239 ---------GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV-LM 288
                    G++  K  F++L  +L E K +  + +    P  + + L++   +++  L 
Sbjct: 217 FGGGSPAVLGIENIKKIFTNLFENL-ERKHIQEITFEAGRPDTIDEKLLQYLSEINQDLN 275

Query: 289 PYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFR 348
             L +  Q+ +D  LK + R H+  + ++   +         I+SD I+G PGE ++D++
Sbjct: 276 VRLCINPQTSNDNTLKIIGRNHSFEDIKRAFAQAYKYSFK-NINSDVILGLPGEDENDYK 334

Query: 349 ATMDLVDKIGYA 360
            T+D V K+  A
Sbjct: 335 RTIDDVLKLSPA 346


>gi|326791624|ref|YP_004309445.1| coproporphyrinogen dehydrogenase [Clostridium lentocellum DSM 5427]
 gi|326542388|gb|ADZ84247.1| Coproporphyrinogen dehydrogenase [Clostridium lentocellum DSM 5427]
          Length = 480

 Score = 41.6 bits (96), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 37/63 (58%), Gaps = 1/63 (1%)

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
           QS + + L ++ RRH   + +++    R++  D  I+ D I+G PGET  D   T+D ++
Sbjct: 277 QSMNQKTLDTIGRRHGVEDIKRVFAEARALGHD-CINMDMILGLPGETVADVAYTLDELE 335

Query: 356 KIG 358
           K+G
Sbjct: 336 KLG 338


>gi|308048378|ref|YP_003911944.1| hypothetical protein Fbal_0658 [Ferrimonas balearica DSM 9799]
 gi|307630568|gb|ADN74870.1| conserved hypothetical protein [Ferrimonas balearica DSM 9799]
          Length = 311

 Score = 41.6 bits (96), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 41/92 (44%), Gaps = 5/92 (5%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +L L +Q+ +D  LK +NR H    Y   + R R     + + +  I+G PGET  D   
Sbjct: 146 WLELGLQTANDSTLKKINRGHDFAAYADTVARARLY--GLKVCTHLILGLPGETPADAEQ 203

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           T+  V  +G       K  P     GS M +Q
Sbjct: 204 TLQQVLAVG---TDGLKLHPLHVVEGSIMAKQ 232


>gi|239931354|ref|ZP_04688307.1| coproporphyrinogen III oxidase [Streptomyces ghanaensis ATCC 14672]
 gi|291439726|ref|ZP_06579116.1| coproporphyrinogen III oxidase [Streptomyces ghanaensis ATCC 14672]
 gi|291342621|gb|EFE69577.1| coproporphyrinogen III oxidase [Streptomyces ghanaensis ATCC 14672]
          Length = 413

 Score = 41.6 bits (96), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 29/116 (25%), Positives = 54/116 (46%), Gaps = 6/116 (5%)

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           +QS    +LK ++R HT       +   R+   +  ++ D I G PGE+DDD+RA++D  
Sbjct: 160 MQSARQHVLKVLDRIHTPGRPEACVAEARAAGFE-HVNLDLIYGTPGESDDDWRASLDAA 218

Query: 355 DKIGYAQAFSFKYSPRLGTPGSNMLEQ-----VDENVKAERLLCLQKKLREQQVSF 405
              G     ++      GT  +  + +      D++V A+R L  ++ L     ++
Sbjct: 219 LGAGPDHVSAYALIVEEGTQLARRIRRGEVPTTDDDVHADRYLIAEETLSAAGFAW 274


>gi|220929399|ref|YP_002506308.1| oxygen-independent coproporphyrinogen III oxidase [Clostridium
           cellulolyticum H10]
 gi|219999727|gb|ACL76328.1| oxygen-independent coproporphyrinogen III oxidase [Clostridium
           cellulolyticum H10]
          Length = 380

 Score = 41.6 bits (96), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 25/101 (24%), Positives = 56/101 (55%), Gaps = 5/101 (4%)

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
           S+P  +S+  +KA+ +  +    + + +Q+  D++LK + R H+  ++ + +   +S   
Sbjct: 99  SNPGTLSNEKLKAYKNAGI--NRISIGLQAYQDKLLKYLGRCHSHKDFTESVKNAKSAGF 156

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIG--YAQAFSFK 366
           +  I+ D I G PG++  D++ T+D +  +G  +  A+S K
Sbjct: 157 E-NINGDIIFGIPGQSLGDWKETLDYLVSLGINHISAYSLK 196


>gi|238793686|ref|ZP_04637308.1| hypothetical protein yinte0001_630 [Yersinia intermedia ATCC 29909]
 gi|238726927|gb|EEQ18459.1| hypothetical protein yinte0001_630 [Yersinia intermedia ATCC 29909]
          Length = 307

 Score = 41.6 bits (96), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 2/69 (2%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +L L +Q+ +D+ LK +NR H    Y+Q   R R+    + +    IVG PGE      A
Sbjct: 141 WLELGLQTANDKTLKRINRGHDFACYQQTARRARA--RGLKVCCHLIVGLPGEDKSQNMA 198

Query: 350 TMDLVDKIG 358
           T++ V   G
Sbjct: 199 TLEQVVATG 207


>gi|319641647|ref|ZP_07996331.1| hypothetical protein HMPREF9011_01929 [Bacteroides sp. 3_1_40A]
 gi|317386730|gb|EFV67625.1| hypothetical protein HMPREF9011_01929 [Bacteroides sp. 3_1_40A]
          Length = 428

 Score = 41.6 bits (96), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 71/303 (23%), Positives = 128/303 (42%), Gaps = 59/303 (19%)

Query: 65  IVLNTCHI----REKAAEKVYSFL-GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILR 119
           +VL  C++    R +A   +Y F   RI  +K   ++          G   +  GE I+ 
Sbjct: 105 VVLKECYVDAVLRGEAECNLYEFYQWRIGKIKADNVR----------GLCYKKNGEVII- 153

Query: 120 RSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAF 179
            SP+  +V   Q  Y   ELL+  ++  + V          +R + + G       +  F
Sbjct: 154 -SPLPPLVELSQLGYHPFELLDIKKYVDKPV---------VKRKNYIPGK------ILPF 197

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISR----SLSQVVDEARKLIDN-GVCEITLLGQNVNA 234
           +T  +GC K C FC   Y   +  S+    SL+ V  E   LI+N G+        N+  
Sbjct: 198 MT-SKGCVKKCAFC---YNTVVNNSKWRPYSLTSVYREMDFLIENYGITGWMFYDDNI-- 251

Query: 235 WRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP 294
                +D E+       Y +     L   R        M +  +KA+      +  L++ 
Sbjct: 252 ----FVDPERAWTIIEKYKMPSSVELDLNRVN----EKMVERALKAN------VAKLYIG 297

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           ++SGSDR+LK M++  T  + R+ +    ++  ++ +S  F++  P E+ +D  AT+ L 
Sbjct: 298 IESGSDRMLKRMHKGITVKQVREKMQMCHNMGMNVDLS--FMILLPNESPEDLEATLSLT 355

Query: 355 DKI 357
            ++
Sbjct: 356 REL 358


>gi|229524363|ref|ZP_04413768.1| hypothetical protein VCA_001953 [Vibrio cholerae bv. albensis
           VL426]
 gi|229337944|gb|EEO02961.1| hypothetical protein VCA_001953 [Vibrio cholerae bv. albensis
           VL426]
          Length = 316

 Score = 41.6 bits (96), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 2/69 (2%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +L L +Q+  D+ LK +NR H    Y +I  + R++   I + +  IVG PGE   +   
Sbjct: 145 WLELGLQTAHDQTLKRINRGHDFACYAEITAKARAL--GIKVCTHLIVGLPGEGRTENLT 202

Query: 350 TMDLVDKIG 358
           T+  V ++G
Sbjct: 203 TLQQVLRVG 211


>gi|299138055|ref|ZP_07031235.1| Radical SAM domain protein [Acidobacterium sp. MP5ACTX8]
 gi|298599985|gb|EFI56143.1| Radical SAM domain protein [Acidobacterium sp. MP5ACTX8]
          Length = 515

 Score = 41.6 bits (96), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 2/85 (2%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           Y+    +S S  +LK MN+RH   +      R  S+   I ++ + I+G+PGET+ D   
Sbjct: 303 YMGFGTESTSKAVLKLMNKRHQRVDEMYETARKASLA-GIRVTFNLILGYPGETEQDRLE 361

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTP 374
           T   +  IG  Q  + ++SP + TP
Sbjct: 362 TFRTMSDIG-RQFPNVRFSPNIFTP 385


>gi|307594548|ref|YP_003900865.1| Radical SAM domain-containing protein [Vulcanisaeta distributa DSM
           14429]
 gi|307549749|gb|ADN49814.1| Radical SAM domain protein [Vulcanisaeta distributa DSM 14429]
          Length = 472

 Score = 41.6 bits (96), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 52/222 (23%), Positives = 90/222 (40%), Gaps = 23/222 (10%)

Query: 185 GCDKFCTFCVVPYTRGIEIS-RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
           GC   C+FC   Y  G  I  RS   V DE    ++     I +   +      +   G+
Sbjct: 207 GCPYGCSFCSTSYFWGRIIRYRSAKAVADEIEDTVNTYKTNIIVFTDD------EFTLGK 260

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSD----CLIKAHGDLDVLMPYLHLPVQSGS 299
           +  + + L  L E K  + + ++     D  D      +K HG        L+  V+SGS
Sbjct: 261 RFVY-EFLRELEERK--LDISFSCGSRVDTIDREMMIALKKHG-----CTALYFGVESGS 312

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
              +  + +R T  +  ++    + ++ D   S  F++GFP E+ DD + T+    K+  
Sbjct: 313 QDTINRIGKRITLEQAVRVFQWAKEIKIDHVGS--FVIGFPWESIDDMKNTVKFAMKLNP 370

Query: 360 AQAFSFKYSPRLGTP--GSNMLEQVDENVKAERLLCLQKKLR 399
             A     +P  GTP     + E + E+   E    L+  +R
Sbjct: 371 TYAQFTVATPYPGTPLYYQALSENLIEDWNWEHWTTLKAVMR 412


>gi|153825912|ref|ZP_01978579.1| conserved hypothetical protein [Vibrio cholerae MZO-2]
 gi|149740410|gb|EDM54541.1| conserved hypothetical protein [Vibrio cholerae MZO-2]
          Length = 316

 Score = 41.6 bits (96), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 2/69 (2%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +L L +Q+  D+ LK +NR H    Y +I  + R++   I + +  IVG PGE   +   
Sbjct: 145 WLELGLQTAHDQTLKRINRGHDFACYAEITAKARAL--GIKVCTHLIVGLPGEGRTENLT 202

Query: 350 TMDLVDKIG 358
           T+  V ++G
Sbjct: 203 TLQQVLRVG 211


>gi|207092915|ref|ZP_03240702.1| hypothetical protein HpylHP_08783 [Helicobacter pylori
           HPKX_438_AG0C1]
          Length = 120

 Score = 41.6 bits (96), Expect = 0.29,   Method: Composition-based stats.
 Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 10/115 (8%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA-EKVYSFLGRIRN 89
           S GC  N+ DS  M    ++  Y   N    AD+I++NTC   E A  E V + L   ++
Sbjct: 13  SLGCSKNLVDSEVMLGKLYN--YTLTNDTKSADVILINTCGFIESAKQESVQTILNAAKD 70

Query: 90  LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            K   I       ++ +GC+++   +EI    P V++  G   Y ++  L+ + +
Sbjct: 71  KKEGAI-------LIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDILIAKKQ 118


>gi|242280924|ref|YP_002993053.1| hypothetical protein Desal_3466 [Desulfovibrio salexigens DSM 2638]
 gi|242123818|gb|ACS81514.1| conserved hypothetical protein [Desulfovibrio salexigens DSM 2638]
          Length = 317

 Score = 41.6 bits (96), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 29/118 (24%), Positives = 56/118 (47%), Gaps = 4/118 (3%)

Query: 245 CTFSDLLYSLSEIKGLVRLR--YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
           C++ +L  +L ++ GL  L      + P  + D  +     L +   +L L +QS ++  
Sbjct: 93  CSYEELKCALDQLNGLPGLAGLCIGTRPDCLDDEKLSLIKSLGLKETWLDLGLQSSNNAT 152

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
           L  +NR HTA ++ + +        D+   +  I G PGET +DF  ++  ++ +  A
Sbjct: 153 LDRINRGHTAEQFAEAVKMAHGHGLDVC--AHLIAGLPGETAEDFIESVRFLNDLPIA 208


>gi|148272742|ref|YP_001222303.1| coproporphyrinogen III oxidase [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|147830672|emb|CAN01608.1| oxygen-independent coproporphyrinogen III oxidase [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
          Length = 407

 Score = 41.6 bits (96), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 59/264 (22%), Positives = 96/264 (36%), Gaps = 45/264 (17%)

Query: 152 TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC-----VVPYTRGIEISRS 206
            D +  D     S  DG   R  GV   +     C   C +C       P  RG+  S  
Sbjct: 8   ADPAPADGLLPTSAADGADARAFGVYLHVPF---CRVRCGYCDFNTYTAPELRGVRQSDY 64

Query: 207 LSQVVDEAR----KLIDNGV----CEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258
            SQ V E R     L D+G+         LG         G         DL+  L  ++
Sbjct: 65  ASQAVQEVRFAGSSLRDSGIPARSASTVFLG---------GGTPTLLPVEDLVRMLDAVR 115

Query: 259 ---GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
              GL      T+     S                +   +QS   R+L ++ R H     
Sbjct: 116 ETFGLAEGAEVTTEANPDSVDDAYLAALAAGGFTRVSFGMQSAVPRVLATLERTHDPARI 175

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD--LVDKIGYAQAFSFKYSPRLGT 373
             ++   R+    + +S D I G PGET DD+RA+++  +  +  +  A++      +  
Sbjct: 176 APVVRGARAA--GLEVSLDLIYGTPGETIDDWRASLEQAIAQEPDHLSAYAL-----IVE 228

Query: 374 PGSNMLEQV--------DENVKAE 389
           PG+ +  Q+        DE+++A+
Sbjct: 229 PGTKLARQIRRDEVPEPDEDLQAD 252


>gi|302560709|ref|ZP_07313051.1| oxygen-independent coproporphyrinogen III oxidase [Streptomyces
           griseoflavus Tu4000]
 gi|302478327|gb|EFL41420.1| oxygen-independent coproporphyrinogen III oxidase [Streptomyces
           griseoflavus Tu4000]
          Length = 349

 Score = 41.6 bits (96), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 29/109 (26%), Positives = 51/109 (46%), Gaps = 6/109 (5%)

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           +QS    +LK ++R HT       +   R+      ++ D I G PGE+DDD+RA++D  
Sbjct: 160 MQSARQHVLKVLDRTHTPGRPEACVAEARA-EGFAHVNLDLIYGTPGESDDDWRASLDAA 218

Query: 355 DKIGYAQAFSFKYSPRLGTPGSNMLEQ-----VDENVKAERLLCLQKKL 398
              G     ++      GT  +  + +      D++V A+R L  ++ L
Sbjct: 219 IGAGPDHVSAYALIVEEGTQLARRIRRGEVPMTDDDVHADRYLIAEEML 267


>gi|307111827|gb|EFN60061.1| hypothetical protein CHLNCDRAFT_133327 [Chlorella variabilis]
          Length = 227

 Score = 41.6 bits (96), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 46/89 (51%), Gaps = 17/89 (19%)

Query: 62  ADLIVLNTCHIREKAA--------------EKVYSFLGRIRN--LKNSRIKEGGDLL-VV 104
           AD IV+NTC   E A               ++    +GRIR   ++ +R+KE G +  VV
Sbjct: 66  ADAIVINTCGFVEDAKDESIEVQRRHAWWRQQQARLIGRIRRTIIEAARMKEDGRVRRVV 125

Query: 105 VAGCVAQAEGEEILRRSPIVNVVVGPQTY 133
           V GC+AQ   +E+  + P  ++VVG + Y
Sbjct: 126 VTGCLAQRYSQELAEQLPEADLVVGFEKY 154


>gi|238796207|ref|ZP_04639717.1| hypothetical protein ymoll0001_34650 [Yersinia mollaretii ATCC
           43969]
 gi|238719900|gb|EEQ11706.1| hypothetical protein ymoll0001_34650 [Yersinia mollaretii ATCC
           43969]
          Length = 300

 Score = 41.6 bits (96), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 5/89 (5%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +L L +Q+ +D+ LK +NR H    Y+Q + R R+    + +    IVG PGE   D   
Sbjct: 141 WLELGLQTANDKTLKRINRGHDFACYQQTVRRARA--RGLKVCCHLIVGLPGE---DRAQ 195

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
            M+ ++K+        K  P     GS M
Sbjct: 196 GMETLEKVVATGVDGLKLHPLHIVEGSTM 224


>gi|34496243|ref|NP_900458.1| hypothetical protein CV_0788 [Chromobacterium violaceum ATCC 12472]
 gi|34102097|gb|AAQ58464.1| conserved hypothetical protein [Chromobacterium violaceum ATCC
           12472]
          Length = 306

 Score = 41.2 bits (95), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 48/115 (41%), Gaps = 15/115 (13%)

Query: 275 DCLIKAHGDLDVLMPY--------LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
           DC+  A   LD+L  Y        L L +Q+  DR    + R H   +YR  + R  +  
Sbjct: 119 DCVPDA--ALDLLASYQAGGAEVWLELGLQTAHDRTQARIRRGHGLADYRDAVARAHAR- 175

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
             + + +  I G PGE  DD  +T+  V  IG       K  P +   GS M  Q
Sbjct: 176 -GLKVCAHLIAGLPGEDADDVHSTLRAVLDIGVE---GLKLHPLMIVRGSRMAAQ 226


>gi|225376151|ref|ZP_03753372.1| hypothetical protein ROSEINA2194_01788 [Roseburia inulinivorans DSM
           16841]
 gi|225211978|gb|EEG94332.1| hypothetical protein ROSEINA2194_01788 [Roseburia inulinivorans DSM
           16841]
          Length = 444

 Score = 41.2 bits (95), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 62/261 (23%), Positives = 112/261 (42%), Gaps = 37/261 (14%)

Query: 135 RLPELLERARFGKRV-VDTDYSVED--------KFERLSIVDGGYNRKRGVTAFLTIQEG 185
           ++PE  +  +F  RV  D++Y  ED        ++    IVD  Y  K    A +T   G
Sbjct: 138 QIPEEQKNQKFVYRVNKDSEYFPEDISNVFLDRRYLGNEIVDNHYGEKE--IAIIT-SRG 194

Query: 186 CDKFCTFCVVPYTRGIEIS---RSLSQVVDEARKLIDN--GVCEITLLGQNVNAWRGKGL 240
           C   C FC    +   +++   R+   V+ E ++++     +  I +L  ++    GK +
Sbjct: 195 CAFDCAFCGGARSLNKDVTTRIRTEESVIMEIKEILSTYPDIQSIRIL-DDLFLRNGKSI 253

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300
           D     FS   +     +G+V +     +   + D     +G    L     + ++SGS+
Sbjct: 254 DMANNIFSK--FPQLSWRGMVHVLSLIGNIEKVKDL---HNGRCRELF----IGIESGSE 304

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI--- 357
           R+ K +N+  ++ +   +   I  +   I +   FI GFP ET +DF+ T +L  KI   
Sbjct: 305 RMRKKINKLGSSDDVITVSKEI--LENGIDLKGYFIYGFPEETKEDFQKTYELASKIKEI 362

Query: 358 -----GYAQAFSFKYSPRLGT 373
                G  +   F++ P  GT
Sbjct: 363 SLKTPGTFRTSVFQFRPYHGT 383


>gi|146292240|ref|YP_001182664.1| putative radical SAM protein [Shewanella putrefaciens CN-32]
 gi|145563930|gb|ABP74865.1| conserved hypothetical radical SAM protein [Shewanella putrefaciens
           CN-32]
          Length = 309

 Score = 41.2 bits (95), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 6/90 (6%)

Query: 270 PRDMSDCLIKAHGD-LDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
           P ++ D L +   D +DV   +L L +Q+ +D  L+ +NR H    Y   + R R+    
Sbjct: 129 PDNVLDLLARYQADGVDV---WLELGLQTANDETLRRINRGHDFACYCDTVSRARA--RG 183

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           + + +  I+G P ET  D+ AT+  V + G
Sbjct: 184 LKVCTHLILGLPNETHSDYMATLAAVLQQG 213


>gi|89896776|ref|YP_520263.1| hypothetical protein DSY4030 [Desulfitobacterium hafniense Y51]
 gi|89336224|dbj|BAE85819.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 334

 Score = 41.2 bits (95), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 47/92 (51%), Gaps = 2/92 (2%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           ++ L +QS  DR ++ + R HT  ++ Q +D++R  R +I + +  I G PGET +D   
Sbjct: 163 WVELGLQSIHDRTMEWVGRGHTFEDFLQGLDKLR--RRNIRVCTHMIYGLPGETLEDMFG 220

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +   + K+              GTP +++ EQ
Sbjct: 221 SAQTLAKLDVQGVKLHLLHVLKGTPLADIYEQ 252


>gi|219667392|ref|YP_002457827.1| hypothetical protein Dhaf_1335 [Desulfitobacterium hafniense DCB-2]
 gi|219537652|gb|ACL19391.1| conserved hypothetical protein [Desulfitobacterium hafniense DCB-2]
          Length = 328

 Score = 41.2 bits (95), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 47/92 (51%), Gaps = 2/92 (2%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           ++ L +QS  DR ++ + R HT  ++ Q +D++R  R +I + +  I G PGET +D   
Sbjct: 157 WVELGLQSIHDRTMEWVGRGHTFEDFLQGLDKLR--RRNIRVCTHMIYGLPGETLEDMFG 214

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +   + K+              GTP +++ EQ
Sbjct: 215 SAQTLAKLDVQGVKLHLLHVLKGTPLADIYEQ 246


>gi|292669404|ref|ZP_06602830.1| oxygen-independent coproporphyrinogen III oxidase 2 [Selenomonas
           noxia ATCC 43541]
 gi|292648965|gb|EFF66937.1| oxygen-independent coproporphyrinogen III oxidase 2 [Selenomonas
           noxia ATCC 43541]
          Length = 503

 Score = 41.2 bits (95), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 1/63 (1%)

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
           QS     L  + R HT  +  +++  IR+   D+ I+ D I+G PGET +D RATM  V 
Sbjct: 295 QSMRGETLVRIGRHHTPEDIVRMVREIRAAF-DVHINMDVILGLPGETAEDVRATMAAVT 353

Query: 356 KIG 358
            + 
Sbjct: 354 ALA 356


>gi|154484063|ref|ZP_02026511.1| hypothetical protein EUBVEN_01772 [Eubacterium ventriosum ATCC
           27560]
 gi|149735105|gb|EDM50991.1| hypothetical protein EUBVEN_01772 [Eubacterium ventriosum ATCC
           27560]
          Length = 599

 Score = 41.2 bits (95), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 38/170 (22%), Positives = 71/170 (41%), Gaps = 10/170 (5%)

Query: 185 GCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK 244
           GC   C++C+    + +   RSL  V  E +  IDN   ++  + +  N         +K
Sbjct: 212 GCPFSCSYCLSSIDKRLRF-RSLDLVKKELQFFIDNNTNQVKFVDRTFNC-------NKK 263

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304
                  Y      G+    +  +    M+D  I    D+   +  L + VQS +++ L+
Sbjct: 264 HAMEIWSYIKKHDNGVTNFHFEIAADL-MTDEEIALISDMRPGLIQLEIGVQSTNEKTLE 322

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           ++NR+    +  +I ++I     +I    D I G P E  + F+ + D V
Sbjct: 323 AINRKTDIEKIAEITEKIHH-GGNIHQHLDLIAGLPYENYESFKRSFDQV 371


>gi|22124047|ref|NP_667470.1| hypothetical protein y0127 [Yersinia pestis KIM 10]
 gi|45443541|ref|NP_995080.1| hypothetical protein YP_3810 [Yersinia pestis biovar Microtus str.
           91001]
 gi|166212030|ref|ZP_02238065.1| radical SAM protein, TIGR01212 family [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|167469339|ref|ZP_02334043.1| Uncharacterized Fe-S oxidoreductase [Yersinia pestis FV-1]
 gi|170022782|ref|YP_001719287.1| putative radical SAM protein [Yersinia pseudotuberculosis YPIII]
 gi|186896984|ref|YP_001874096.1| putative radical SAM protein [Yersinia pseudotuberculosis PB1/+]
 gi|270488526|ref|ZP_06205600.1| radical SAM protein, TIGR01212 family [Yersinia pestis KIM D27]
 gi|21956793|gb|AAM83721.1|AE013613_1 hypothetical protein y0127 [Yersinia pestis KIM 10]
 gi|45438410|gb|AAS63957.1| Uncharacterized Fe-S oxidoreductases [Yersinia pestis biovar
           Microtus str. 91001]
 gi|166206776|gb|EDR51256.1| radical SAM protein, TIGR01212 family [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|169749316|gb|ACA66834.1| conserved hypothetical radical SAM protein [Yersinia
           pseudotuberculosis YPIII]
 gi|186700010|gb|ACC90639.1| conserved hypothetical radical SAM protein [Yersinia
           pseudotuberculosis PB1/+]
 gi|262363384|gb|ACY60105.1| hypothetical protein YPD4_3201 [Yersinia pestis D106004]
 gi|262367238|gb|ACY63795.1| hypothetical protein YPD8_3125 [Yersinia pestis D182038]
 gi|270337030|gb|EFA47807.1| radical SAM protein, TIGR01212 family [Yersinia pestis KIM D27]
          Length = 329

 Score = 41.2 bits (95), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 2/69 (2%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +L L +Q+ +D+ LK +NR H    Y+Q   R R+    + +    IVG PGE     R 
Sbjct: 163 WLELGLQTANDKTLKRINRGHDFACYQQTARRARA--RGLKVCCHLIVGLPGEDRAQGRE 220

Query: 350 TMDLVDKIG 358
           T++ V   G
Sbjct: 221 TLEKVVTTG 229


>gi|254303168|ref|ZP_04970526.1| iron-sulfur (Fe-S) dehydrogenase [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
 gi|148323360|gb|EDK88610.1| iron-sulfur (Fe-S) dehydrogenase [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
          Length = 434

 Score = 41.2 bits (95), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 70/354 (19%), Positives = 149/354 (42%), Gaps = 49/354 (13%)

Query: 40  DSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGG 99
           D  + E + F +  E +    + DL+V+ T  +    A++ Y+     R       K+G 
Sbjct: 32  DRKKHEVVLFDERIEDIPMDLEVDLVVITTFTL---TAKRAYTIADNYR-------KKG- 80

Query: 100 DLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDK 159
            + VV+ G  A    EE+   +  V V      + R   L+E      + V  +  + D 
Sbjct: 81  -IYVVIGGYHASLIPEEVQEYADTVFVGSAEGNWERF--LIELENGNPQKVYEEIKLPDI 137

Query: 160 FERLSIVDGGYNRKRGVTAFLTIQ--EGCDKFCTFCVV-PYTRGIEISRSLSQVVDEARK 216
            E   + D    + +  +  + +Q   GC   C FC +    RG    R +  V++E ++
Sbjct: 138 SE--VVYDRSLFKDKRYSFVVPVQFGRGCMHQCEFCTIGSVHRGDYAHRRVELVIEEIKE 195

Query: 217 LIDNG--VCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMS 274
           +         I  +  N+ A + K L           +  +E+K L ++++      D++
Sbjct: 196 IFKTNKRAKVIYFVDDNIFANKKKAL-----------HLFNELKKL-KIKWACQGSIDIA 243

Query: 275 D-----CLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA-YEYRQIIDRIRSVRPD 328
                  L+   G +++L+ + ++ + +     +K MN++    ++Y  II   +  R  
Sbjct: 244 KDEELVKLMSESGCIEMLLGFENINIMN-----IKKMNKKSNYDFDYENIIRIFKKYR-- 296

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           I + + +++G+  +T D F+  +D  +K    + F   ++P L  PG+   +++
Sbjct: 297 ILVHASYVIGYDYDTKDYFQEILDFSNK---HKFFLAGFNPALPIPGTPFYDRL 347


>gi|29347578|ref|NP_811081.1| coproporphyrinogen III oxidase [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|253572038|ref|ZP_04849442.1| coproporphyrinogen III oxidase [Bacteroides sp. 1_1_6]
 gi|29339479|gb|AAO77275.1| coproporphyrinogen III oxidase [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|251838218|gb|EES66305.1| coproporphyrinogen III oxidase [Bacteroides sp. 1_1_6]
          Length = 376

 Score = 41.2 bits (95), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 75/170 (44%), Gaps = 22/170 (12%)

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTT--SHPRDMSDCLIKAHGDLDVLMPY--LHLPVQSG 298
           E+  F  +  ++ E  G+   R  T  ++P D+S   +K    L    P+  + + +Q+ 
Sbjct: 66  EEADFKHIFETIRENYGMEHCREITLEANPDDLSQEYLKMLSSL----PFNRISMGIQTF 121

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDD----DFRATMDLV 354
            D  L+ + RRH++    + + R R       IS D I G PGET +    D R  + L 
Sbjct: 122 DDTTLQLLKRRHSSQTAVEAVRRCREAGFQ-NISIDLIYGLPGETKERWVNDLRQAIRL- 179

Query: 355 DKIGYAQAFSFKYSPRLGTPGSNML-----EQVDENVKAERLLCLQKKLR 399
             + +  A+   Y     TP  NML     E+VDE+   +    L + L+
Sbjct: 180 -DVEHISAYHLTYEE--DTPIYNMLKQHQIEEVDEDSSLQFFTLLIEHLQ 226


>gi|147668759|ref|YP_001213577.1| radical SAM domain-containing protein [Dehalococcoides sp. BAV1]
 gi|146269707|gb|ABQ16699.1| Radical SAM domain protein [Dehalococcoides sp. BAV1]
          Length = 494

 Score = 41.2 bits (95), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 50/219 (22%), Positives = 90/219 (41%), Gaps = 25/219 (11%)

Query: 180 LTIQEGCDKFCTFCV-VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK 238
           L    GC   C+FC  +P+  G     S+ ++V +   L  N   +     ++   +  K
Sbjct: 187 LNTSRGCPFKCSFCYNIPFHHGHRADLSVERIVAQIEHLQKNYKVKFIRFFEDNFTFNRK 246

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSD---CLIKAHGDLDVLMPYLHLPV 295
            +  E C         + I   +++++ T    DMS+    L+   G   V      + V
Sbjct: 247 RMR-EFCQ--------TVIDRRIKIKWDTESRADMSEEDVALMAKAGCTSV-----GIGV 292

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRI--RSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
           ++GS R+L+ +N+     E  +   R     + P + I    ++  P ET +DF  T D+
Sbjct: 293 ETGSKRMLEYLNKGVDLDEMGRTFWRFVKHGIMPRLYI----MLAVPTETVEDFTETQDM 348

Query: 354 VDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLL 392
           + ++        ++ P  GTP  N L Q D  +K    L
Sbjct: 349 LHRMEDPPFMYMRFVPYPGTPLYNQLVQ-DNRIKPPESL 386


>gi|218888069|ref|YP_002437390.1| radical SAM protein [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218759023|gb|ACL09922.1| Radical SAM domain protein [Desulfovibrio vulgaris str. 'Miyazaki
           F']
          Length = 771

 Score = 41.2 bits (95), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 7/80 (8%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLID----NGVCEITLLGQNVNA 234
           +T   GC   C+FC +   +G  I SRS   V+DEAR+L D    NG     + G + N 
Sbjct: 382 ITTHRGCGGGCSFCSLALHQGRRIASRSRGSVLDEARRLNDMERFNGSVS-DVGGPSANM 440

Query: 235 WRGK-GLDGEKCTFSDLLYS 253
           W+ +  LD  +C  +  ++ 
Sbjct: 441 WQARCTLDPARCRRASCMHP 460


>gi|315641132|ref|ZP_07896211.1| coproporphyrinogen dehydrogenase [Enterococcus italicus DSM 15952]
 gi|315483140|gb|EFU73657.1| coproporphyrinogen dehydrogenase [Enterococcus italicus DSM 15952]
          Length = 385

 Score = 41.2 bits (95), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 41/173 (23%), Positives = 76/173 (43%), Gaps = 17/173 (9%)

Query: 186 CDKFCTFCVVP--YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
           C+  C +C     +  G  +   + +++DE    I+ G    T     +    G      
Sbjct: 16  CEHICYYCDFNKVFLEGQPVDEYVDRLLDE----IEWGTKNKTTSFPTIYIGGGTPTSLT 71

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTT--SHPRDMSD---CLIKAHGDLDVLMPYLHLPVQSG 298
                 LL  ++E   L   +  T  ++P D+++    +I+ +G   V M      VQS 
Sbjct: 72  ATQLDKLLAGITERVSLADTKEFTIEANPGDLTEEKLAIIQNYGVNRVSMG-----VQSF 126

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351
            DR+LK + R+H+A +  + +  + + +    +S D I   PG+T D+FR T+
Sbjct: 127 DDRLLKKIGRKHSAQDVTETLHLLEA-KGFSNVSIDLIYALPGQTLDNFRQTL 178


>gi|254382706|ref|ZP_04998063.1| coproporphyrinogen III oxidase [Streptomyces sp. Mg1]
 gi|194341608|gb|EDX22574.1| coproporphyrinogen III oxidase [Streptomyces sp. Mg1]
          Length = 416

 Score = 41.2 bits (95), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 29/116 (25%), Positives = 53/116 (45%), Gaps = 6/116 (5%)

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           +QS    +LK ++R HT       +   R+   +  ++ D I G PGE+DDD+RA+++  
Sbjct: 163 MQSARQHVLKVLDRTHTPGRPEACVAEARAAGFE-HVNLDLIYGTPGESDDDWRASLEAA 221

Query: 355 DKIGYAQAFSFKYSPRLGTPGSNMLEQ-----VDENVKAERLLCLQKKLREQQVSF 405
              G     ++      GT  +  + +      D++V A+R L     + E   S+
Sbjct: 222 LGAGPDHVSAYALIVEEGTQLARRIRRGEVPMTDDDVHADRYLIADSVMAEAGYSW 277


>gi|323498037|ref|ZP_08103045.1| putative Fe-S oxidoreductase [Vibrio sinaloensis DSM 21326]
 gi|323316913|gb|EGA69916.1| putative Fe-S oxidoreductase [Vibrio sinaloensis DSM 21326]
          Length = 314

 Score = 41.2 bits (95), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 2/69 (2%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +L L +Q+ +D  LK +NR H    Y QI  R R++   I + +  IVG P E+  D   
Sbjct: 141 WLELGLQTANDDTLKRINRGHDFACYAQITQRARAL--GIKVCTHLIVGLPKESRTDNID 198

Query: 350 TMDLVDKIG 358
           T+  V ++G
Sbjct: 199 TLTKVLEVG 207


>gi|86739970|ref|YP_480370.1| coproporphyrinogen III oxidase [Frankia sp. CcI3]
 gi|86566832|gb|ABD10641.1| coproporphyrinogen III oxidase, anaerobic [Frankia sp. CcI3]
          Length = 411

 Score = 41.2 bits (95), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 28/103 (27%), Positives = 52/103 (50%), Gaps = 6/103 (5%)

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           +QS    +L +++RRHT     +++   R    D  +S D I G PGE++ D+ A++D  
Sbjct: 157 MQSSRPHVLAALDRRHTPGRVPEVMRWARKAGFD-QVSLDLIYGAPGESEADWAASLDAA 215

Query: 355 DKIGYAQAFSFKYSPRLGTPGS-----NMLEQVDENVKAERLL 392
            ++G     ++  +   GT  S       L + D+++ A+R L
Sbjct: 216 IQLGPDHVSAYALTVEEGTKLSRRVRRGELLEPDDDLLADRYL 258


>gi|270263223|ref|ZP_06191493.1| putative Fe-S oxidoreductase [Serratia odorifera 4Rx13]
 gi|270042911|gb|EFA16005.1| putative Fe-S oxidoreductase [Serratia odorifera 4Rx13]
          Length = 308

 Score = 41.2 bits (95), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 44/90 (48%), Gaps = 16/90 (17%)

Query: 275 DCLIKAHGDLDVLMPYLH--------LPVQSGSDRILKSMNRRH--TAYEYRQIIDRIRS 324
           DC+  A   LD+L  YL         L +Q+  D+ LK +NR H  + Y++   + R R 
Sbjct: 120 DCVPPA--ALDLLAGYLEQGYEVWLELGLQTAHDKTLKRINRGHNFSCYQHTARLARERG 177

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           ++    + S  IVG PGE   D  AT+  V
Sbjct: 178 LK----VCSHLIVGLPGENSADHLATLRQV 203


>gi|167400644|ref|ZP_02306153.1| radical SAM protein, TIGR01212 family [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167050012|gb|EDR61420.1| radical SAM protein, TIGR01212 family [Yersinia pestis biovar
           Antiqua str. UG05-0454]
          Length = 311

 Score = 41.2 bits (95), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 2/69 (2%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +L L +Q+ +D+ LK +NR H    Y+Q   R R+    + +    IVG PGE     R 
Sbjct: 141 WLELGLQTANDKTLKRINRGHDFACYQQTARRARA--RGLKVCCHLIVGLPGEDRAQGRE 198

Query: 350 TMDLVDKIG 358
           T++ V   G
Sbjct: 199 TLEKVVTTG 207


>gi|158313942|ref|YP_001506450.1| coproporphyrinogen III oxidase [Frankia sp. EAN1pec]
 gi|158109347|gb|ABW11544.1| putative oxygen-independent coproporphyrinogen III oxidase [Frankia
           sp. EAN1pec]
          Length = 409

 Score = 41.2 bits (95), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 55/111 (49%), Gaps = 10/111 (9%)

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSV--RPDIAISSDFIVGFPGETDDDFRATMD 352
           +QS    +L +++RRHT     +++   RS   R    +S D I G PGE++ D+ A++D
Sbjct: 155 MQSARPHVLAALDRRHTPGRVPEVVGWARSAGFR---QLSLDLIYGAPGESESDWAASLD 211

Query: 353 LVDKIGYAQAFSFKYSPRLGTPGS-----NMLEQVDENVKAERLLCLQKKL 398
            V ++      ++  +   GT  S       L + D+++ A+R L   + L
Sbjct: 212 TVIELAPDHVSAYALTVEEGTKLSRRVRRGELLEPDDDLLADRYLQADEAL 262


>gi|297571551|ref|YP_003697325.1| oxygen-independent coproporphyrinogen III oxidase [Arcanobacterium
           haemolyticum DSM 20595]
 gi|296931898|gb|ADH92706.1| oxygen-independent coproporphyrinogen III oxidase [Arcanobacterium
           haemolyticum DSM 20595]
          Length = 394

 Score = 41.2 bits (95), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 4/77 (5%)

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           +QS    +L ++ R+HT  + R++    R V  D ++  D I G PGE+ DD++ ++D  
Sbjct: 147 MQSAVSHVLDTLERQHTPGQVREVTRWARQVGLDYSV--DLIYGAPGESLDDWQRSLDAA 204

Query: 355 DKI--GYAQAFSFKYSP 369
             +  G+  A+     P
Sbjct: 205 IALEPGHISAYGLTIEP 221


>gi|108809738|ref|YP_653654.1| hypothetical protein YPA_3747 [Yersinia pestis Antiqua]
 gi|108781651|gb|ABG15709.1| hypothetical protein YPA_3747 [Yersinia pestis Antiqua]
          Length = 316

 Score = 41.2 bits (95), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 2/69 (2%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +L L +Q+ +D+ LK +NR H    Y+Q   R R+    + +    IVG PGE     R 
Sbjct: 148 WLELGLQTANDKTLKRINRGHDFACYQQTARRARA--RGLKVCCHLIVGLPGEDRAQGRE 205

Query: 350 TMDLVDKIG 358
           T++ V   G
Sbjct: 206 TLEKVVTTG 214


>gi|108813598|ref|YP_649365.1| hypothetical protein YPN_3438 [Yersinia pestis Nepal516]
 gi|145597657|ref|YP_001161733.1| hypothetical protein YPDSF_0341 [Yersinia pestis Pestoides F]
 gi|108777246|gb|ABG19765.1| hypothetical protein YPN_3438 [Yersinia pestis Nepal516]
 gi|145209353|gb|ABP38760.1| hypothetical protein YPDSF_0341 [Yersinia pestis Pestoides F]
          Length = 314

 Score = 41.2 bits (95), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 2/69 (2%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +L L +Q+ +D+ LK +NR H    Y+Q   R R+    + +    IVG PGE     R 
Sbjct: 148 WLELGLQTANDKTLKRINRGHDFACYQQTARRARA--RGLKVCCHLIVGLPGEDRAQGRE 205

Query: 350 TMDLVDKIG 358
           T++ V   G
Sbjct: 206 TLEKVVTTG 214


>gi|171185657|ref|YP_001794576.1| radical SAM domain-containing protein [Thermoproteus neutrophilus
           V24Sta]
 gi|170934869|gb|ACB40130.1| Radical SAM domain protein [Thermoproteus neutrophilus V24Sta]
          Length = 412

 Score = 41.2 bits (95), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 61/247 (24%), Positives = 99/247 (40%), Gaps = 39/247 (15%)

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           R R G+RV             + +V   Y+R   V   + I   C   C FC   + +G 
Sbjct: 131 RPRAGRRVY------------VELVHRTYSRSLEVYPPIEIMRSCVYRCAFCQT-WAQGR 177

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK--GLDGEKCTFSDLLYSLSEIKG 259
              R L  VV+ A+  +  G   I  +   V    G   G        + LL ++ E+ G
Sbjct: 178 VRFRPLENVVELAKAYVAAGHRAIRFIAP-VGFLYGSPDGRTPSPDALAALLKAVREVGG 236

Query: 260 LVRLRYTTSH--PRDMSDCLIKAHGDLDVLMPY-----LHLPVQSGSDRILKSMNRRHTA 312
           +  L    S   P  ++  ++KA      + PY     +   +Q+ SD++LK   R H  
Sbjct: 237 VPHLGTFPSETRPETVTRDVLKA------VKPYVANRRISFGLQTASDKLLKLTKRDHDV 290

Query: 313 YEYRQIIDRIRSV--RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK---Y 367
               + +    S+  +P +    D I G PGE +DD   T+  ++K+  A   + +   Y
Sbjct: 291 AAVEEAVKTAVSMGFKPVV----DVIGGLPGEEEDDVVKTVREMEKL-VAMGANIRMHYY 345

Query: 368 SPRLGTP 374
            P  GTP
Sbjct: 346 IPLPGTP 352


>gi|162421099|ref|YP_001605673.1| radical SAM family protein [Yersinia pestis Angola]
 gi|162353914|gb|ABX87862.1| radical SAM protein, TIGR01212 family [Yersinia pestis Angola]
          Length = 327

 Score = 41.2 bits (95), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 2/69 (2%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +L L +Q+ +D+ LK +NR H    Y+Q   R R+    + +    IVG PGE     R 
Sbjct: 163 WLELGLQTANDKTLKRINRGHDFACYQQTARRARA--RGLKVCCHLIVGLPGEDRAQGRE 220

Query: 350 TMDLVDKIG 358
           T++ V   G
Sbjct: 221 TLEKVVTTG 229


>gi|51597793|ref|YP_071984.1| hypothetical protein YPTB3501 [Yersinia pseudotuberculosis IP
           32953]
 gi|153949697|ref|YP_001399461.1| radical SAM family protein [Yersinia pseudotuberculosis IP 31758]
 gi|153997331|ref|ZP_02022431.1| hypothetical protein YPE_3778 [Yersinia pestis CA88-4125]
 gi|165928099|ref|ZP_02223931.1| radical SAM protein, TIGR01212 family [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165937398|ref|ZP_02225961.1| radical SAM protein, TIGR01212 family [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166011299|ref|ZP_02232197.1| radical SAM protein, TIGR01212 family [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|167420787|ref|ZP_02312540.1| radical SAM protein, TIGR01212 family [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167426995|ref|ZP_02318748.1| radical SAM protein, TIGR01212 family [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|218930568|ref|YP_002348443.1| hypothetical protein YPO3556 [Yersinia pestis CO92]
 gi|229837085|ref|ZP_04457250.1| predicted Fe-S oxidoreductase [Yersinia pestis Pestoides A]
 gi|229839212|ref|ZP_04459371.1| predicted Fe-S oxidoreductase [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229899776|ref|ZP_04514917.1| predicted Fe-S oxidoreductase [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229904092|ref|ZP_04519203.1| predicted Fe-S oxidoreductase [Yersinia pestis Nepal516]
 gi|294505321|ref|YP_003569383.1| hypothetical protein YPZ3_3212 [Yersinia pestis Z176003]
 gi|51591075|emb|CAH22739.1| conserved hypothetical protein [Yersinia pseudotuberculosis IP
           32953]
 gi|115349179|emb|CAL22144.1| conserved hypothetical protein [Yersinia pestis CO92]
 gi|149288968|gb|EDM39048.1| hypothetical protein YPE_3778 [Yersinia pestis CA88-4125]
 gi|152961192|gb|ABS48653.1| radical SAM protein, TIGR01212 family [Yersinia pseudotuberculosis
           IP 31758]
 gi|165914503|gb|EDR33117.1| radical SAM protein, TIGR01212 family [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165919873|gb|EDR37174.1| radical SAM protein, TIGR01212 family [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165989683|gb|EDR41984.1| radical SAM protein, TIGR01212 family [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166961593|gb|EDR57614.1| radical SAM protein, TIGR01212 family [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167054035|gb|EDR63863.1| radical SAM protein, TIGR01212 family [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|229678210|gb|EEO74315.1| predicted Fe-S oxidoreductase [Yersinia pestis Nepal516]
 gi|229687268|gb|EEO79343.1| predicted Fe-S oxidoreductase [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229695578|gb|EEO85625.1| predicted Fe-S oxidoreductase [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229706028|gb|EEO92037.1| predicted Fe-S oxidoreductase [Yersinia pestis Pestoides A]
 gi|294355780|gb|ADE66121.1| hypothetical protein YPZ3_3212 [Yersinia pestis Z176003]
 gi|320017098|gb|ADW00670.1| putative Fe-S oxidoreductase [Yersinia pestis biovar Medievalis
           str. Harbin 35]
          Length = 307

 Score = 41.2 bits (95), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 2/69 (2%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +L L +Q+ +D+ LK +NR H    Y+Q   R R+    + +    IVG PGE     R 
Sbjct: 141 WLELGLQTANDKTLKRINRGHDFACYQQTARRARA--RGLKVCCHLIVGLPGEDRAQGRE 198

Query: 350 TMDLVDKIG 358
           T++ V   G
Sbjct: 199 TLEKVVTTG 207


>gi|188995358|ref|YP_001929610.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Porphyromonas gingivalis ATCC 33277]
 gi|188595038|dbj|BAG34013.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Porphyromonas gingivalis ATCC 33277]
          Length = 376

 Score = 41.2 bits (95), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 53/114 (46%), Gaps = 14/114 (12%)

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD--IAISSDFIVGFPGETDDDFRATMD 352
            QS  D  L  +NRRH A   RQ+++ + + R      +S D I G PG+T   ++  + 
Sbjct: 117 AQSFHDEDLHFLNRRHNA---RQVLEAVDTCRNAGLTNLSIDLIYGLPGQTPARWQENIS 173

Query: 353 LVDKIGYAQAFSFKYSPRLGTPGSNMLE-----QVDENVKAERLLCLQKKLREQ 401
            V  +  +   ++      GTP + +L      +VDE V  E    L + LREQ
Sbjct: 174 AVLALSPSHLSAYHLIYEEGTPLTRLLHAGKVREVDEEVSLE----LFRMLREQ 223


>gi|298383728|ref|ZP_06993289.1| oxygen-independent coproporphyrinogen III oxidase [Bacteroides sp.
           1_1_14]
 gi|298263332|gb|EFI06195.1| oxygen-independent coproporphyrinogen III oxidase [Bacteroides sp.
           1_1_14]
          Length = 376

 Score = 41.2 bits (95), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 75/170 (44%), Gaps = 22/170 (12%)

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTT--SHPRDMSDCLIKAHGDLDVLMPY--LHLPVQSG 298
           E+  F  +  ++ E  G+   R  T  ++P D+S   +K    L    P+  + + +Q+ 
Sbjct: 66  EEADFKRIFETIRENYGMEHCREITLEANPDDLSQEYLKMLSSL----PFNRISMGIQTF 121

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGET----DDDFRATMDLV 354
            D  L+ + RRH +    + + R R       IS D I G PGET    ++D R  + L 
Sbjct: 122 DDTTLRLLKRRHNSQTAIEAVRRCREAGFQ-NISIDLIYGLPGETKGRWENDLRQAIRL- 179

Query: 355 DKIGYAQAFSFKYSPRLGTPGSNML-----EQVDENVKAERLLCLQKKLR 399
             + +  A+   Y     TP  NML     E+VDE+   +    L + L+
Sbjct: 180 -DVEHISAYHLTYEE--DTPIYNMLKQHQIEEVDEDSSLQFFTLLIEHLQ 226


>gi|163815130|ref|ZP_02206511.1| hypothetical protein COPEUT_01286 [Coprococcus eutactus ATCC 27759]
 gi|158449539|gb|EDP26534.1| hypothetical protein COPEUT_01286 [Coprococcus eutactus ATCC 27759]
          Length = 292

 Score = 41.2 bits (95), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 37/62 (59%), Gaps = 2/62 (3%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           ++ L +Q+ +DR  K +NR +T  EY + ++ ++  R D+ +    I+G PGET  D  +
Sbjct: 140 WIELGLQTSNDRTAKLINRCYTLDEYDKTMNNLK--RLDVHVVVHMIIGLPGETKQDMIS 197

Query: 350 TM 351
           T+
Sbjct: 198 TV 199


>gi|62391133|ref|YP_226535.1| coproporphyrinogen III oxidase [Corynebacterium glutamicum ATCC
           13032]
 gi|161486712|ref|NP_601492.2| coproporphyrinogen III oxidase [Corynebacterium glutamicum ATCC
           13032]
 gi|41326472|emb|CAF20634.1| PUTATIVE ANAEROBIC COPROPORPHYRINOGEN III OXIDASE [Corynebacterium
           glutamicum ATCC 13032]
          Length = 380

 Score = 41.2 bits (95), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 54/119 (45%), Gaps = 16/119 (13%)

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
           + L +QS S  +LK ++R HT           R    +  ++ D I G P ETDDD R T
Sbjct: 122 ISLGMQSASSSVLKVLDRTHTPGRPVAAAKEAREAGFE-HVNLDMIYGTPTETDDDVRKT 180

Query: 351 MDLV--DKIGYAQAFSFKYSPRLGTPGSNMLEQV--------DENVKAERLLCLQKKLR 399
           +D V    + +  A+S      +   G+ M  +V        DE+V A+R   +  +LR
Sbjct: 181 LDAVLEANVDHVSAYSL-----IVEDGTAMARKVRKGELPAPDEDVYADRFELIDARLR 234


>gi|291514372|emb|CBK63582.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Alistipes shahii WAL 8301]
          Length = 377

 Score = 41.2 bits (95), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 5/85 (5%)

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD--IAISSDFIVGFPGETDDDFR 348
           L + +QS  D  LK MNRRH A    Q ++ +RS + +    I+ D I G PG  DD  R
Sbjct: 114 LSVGIQSFDDACLKLMNRRHNA---AQAVEAVRSAQREGYENITVDLIFGVPGFGDDTLR 170

Query: 349 ATMDLVDKIGYAQAFSFKYSPRLGT 373
            ++D    +G     ++  +   GT
Sbjct: 171 RSLDSALALGVQHISAYHLTVEPGT 195


>gi|120599824|ref|YP_964398.1| putative radical SAM protein [Shewanella sp. W3-18-1]
 gi|120559917|gb|ABM25844.1| conserved hypothetical radical SAM protein [Shewanella sp. W3-18-1]
          Length = 309

 Score = 41.2 bits (95), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 6/90 (6%)

Query: 270 PRDMSDCLIKAHGD-LDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
           P ++ D L +   D +DV   +L L +Q+ +D  L+ +NR H    Y   + R R+    
Sbjct: 129 PDNVLDLLARYQADGVDV---WLELGLQTANDETLRRINRGHDFACYCDTVSRARA--RG 183

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           + + +  I+G P ET  D+ AT+  V + G
Sbjct: 184 LKVCTHLILGLPNETHGDYMATLAAVLQQG 213


>gi|21674821|ref|NP_662886.1| oxygen-independent coproporphyrinogen III oxidase, putative
           [Chlorobium tepidum TLS]
 gi|21648040|gb|AAM73228.1| oxygen-independent coproporphyrinogen III oxidase, putative
           [Chlorobium tepidum TLS]
          Length = 375

 Score = 41.2 bits (95), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 55/109 (50%), Gaps = 13/109 (11%)

Query: 254 LSEIKGLVRLRYTT-----SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
           LS+I G+ R+   T     ++P D+    + A   + V    L + VQS +DR L+++ R
Sbjct: 74  LSQISGIARISAETEITLEANPEDLLPASLDALQSVGV--NRLSIGVQSFADRKLRALGR 131

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGET----DDDFRATMDL 353
            H+A + R+++       P ++I  D + G  GE     + D RA +DL
Sbjct: 132 AHSAADARRVVLEALERFPSVSI--DLMCGAEGEMLAEWEGDLRAALDL 178


>gi|296269131|ref|YP_003651763.1| oxygen-independent coproporphyrinogen III oxidase [Thermobispora
           bispora DSM 43833]
 gi|296091918|gb|ADG87870.1| oxygen-independent coproporphyrinogen III oxidase [Thermobispora
           bispora DSM 43833]
          Length = 403

 Score = 40.8 bits (94), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 31/112 (27%), Positives = 54/112 (48%), Gaps = 12/112 (10%)

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           +QS  + +L+ ++RRHT     Q +    +      ++ D I   PGE+DDD+RAT++  
Sbjct: 150 MQSAREHVLRVLDRRHTPGRAVQAVREAHAAG-FAHVNLDLIYNTPGESDDDWRATLETA 208

Query: 355 DKIG--YAQAFSF------KYSPRLGTPGSNMLEQVDENVKAERLLCLQKKL 398
              G  +  A+S       + + R+       L   DE+V A+R L  ++ L
Sbjct: 209 LAAGPDHVSAYSLIVEDGTRLAARV---RRGELPMPDEDVAADRYLIAEELL 257


>gi|313623722|gb|EFR93868.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Listeria innocua FSL J1-023]
          Length = 399

 Score = 40.8 bits (94), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 47/84 (55%), Gaps = 3/84 (3%)

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
           ++P D+S   ++A  +  V    + + VQS ++ +LK + R HT  +  Q ++ +R V  
Sbjct: 118 ANPGDLSISKLQAMQNYGV--NRISMGVQSFNNELLKKIGRIHTVKDVYQSVENMRKVGF 175

Query: 328 DIAISSDFIVGFPGETDDDFRATM 351
           +  +S D I   PG+T+ DF+ T+
Sbjct: 176 E-NVSIDLIFSLPGQTEADFKDTL 198


>gi|145296247|ref|YP_001139068.1| coproporphyrinogen III oxidase [Corynebacterium glutamicum R]
 gi|140846167|dbj|BAF55166.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 351

 Score = 40.8 bits (94), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 56/120 (46%), Gaps = 18/120 (15%)

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA-ISSDFIVGFPGETDDDFRA 349
           + L +QS S  +LK ++R HT    R +     + R     ++ D I G P ETDDD R 
Sbjct: 93  ISLGMQSASSSVLKVLDRTHTPG--RPVAAAKEARRAGFEHVNLDMIYGTPTETDDDVRK 150

Query: 350 TMDLV--DKIGYAQAFSFKYSPRLGTPGSNMLEQV--------DENVKAERLLCLQKKLR 399
           T+D V    + +  A+S      +   G+ M  +V        DE+V A+R   +  +LR
Sbjct: 151 TLDAVLEANVDHVSAYSL-----IVEDGTAMARKVRKGELPAPDEDVYADRFELIDARLR 205


>gi|302551342|ref|ZP_07303684.1| coproporphyrinogen III oxidase [Streptomyces viridochromogenes DSM
           40736]
 gi|302468960|gb|EFL32053.1| coproporphyrinogen III oxidase [Streptomyces viridochromogenes DSM
           40736]
          Length = 429

 Score = 40.8 bits (94), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 28/109 (25%), Positives = 53/109 (48%), Gaps = 6/109 (5%)

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           +QS    +LK ++R HT     + +   R+   +  ++ D I G PGE+DDD+RA+++  
Sbjct: 176 MQSARQHVLKVLDRTHTPGRPERCVAEARAAGFE-HVNLDLIYGTPGESDDDWRASLEAA 234

Query: 355 DKIGYAQAFSFKYSPRLGTPGSNMLEQ-----VDENVKAERLLCLQKKL 398
              G     ++      GT  +  + +      D++V A+R L  ++ L
Sbjct: 235 LGAGPDHVSAYALIVEEGTQLARRIRRGEVPMTDDDVHADRYLIAEEML 283


>gi|15644349|ref|NP_229401.1| hypothetical protein TM1601 [Thermotoga maritima MSB8]
 gi|4982172|gb|AAD36668.1|AE001804_12 conserved hypothetical protein [Thermotoga maritima MSB8]
          Length = 551

 Score = 40.8 bits (94), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 43/202 (21%), Positives = 84/202 (41%), Gaps = 29/202 (14%)

Query: 180 LTIQEGCDK--FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR- 236
           + +  GC++  FC+FC  P   G   SR +  ++ E   L   G C     G+  N    
Sbjct: 178 IEVSRGCERRTFCSFCTEPLLHGRLKSRDVQAILKEIESLYRAG-CRAFRFGRAANILAF 236

Query: 237 GKGLDGEKCT---FSDLLYSLSEIKGLVRLRYT-TSHP----------RDMSDCLIKAHG 282
           G   +G K +     +L     E+   + + +T  ++P          R + + +++ + 
Sbjct: 237 GSDRNGGKPSPEILEELYSGTREVAPHLEVLHTDNANPSYLVTYEKECRKIVETIVRYNT 296

Query: 283 DLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ---IIDRIRSVR----PDIAISSDF 335
             DV        V+S  + +LK  N + +  E+ +   +++ I  VR    P +    + 
Sbjct: 297 PGDV----FSFGVESFDENVLKKNNVQGSPEEFLKAIAVVNEIGGVRVDGIPKLLPGVNL 352

Query: 336 IVGFPGETDDDFRATMDLVDKI 357
           I G PGET++  +     + +I
Sbjct: 353 IFGLPGETEETLKKNYSYLKRI 374


>gi|119773995|ref|YP_926735.1| hypothetical protein Sama_0858 [Shewanella amazonensis SB2B]
 gi|119766495|gb|ABL99065.1| conserved hypothetical protein [Shewanella amazonensis SB2B]
          Length = 317

 Score = 40.8 bits (94), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 2/58 (3%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDF 347
           +L L +Q+  D  LK +NR H    Y   + R R  R  I + +  I+G PGET +DF
Sbjct: 148 WLDLGLQTARDDTLKRINRGHDFAIYADAVTRAR--RLGIKVCTHLILGLPGETSEDF 203


>gi|329115190|ref|ZP_08243945.1| Putative methyltransferase [Acetobacter pomorum DM001]
 gi|326695633|gb|EGE47319.1| Putative methyltransferase [Acetobacter pomorum DM001]
          Length = 489

 Score = 40.8 bits (94), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 56/213 (26%), Positives = 93/213 (43%), Gaps = 25/213 (11%)

Query: 185 GCDKFCTFCVVP-YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
           GC   C FC    Y  G    R + ++V+E  KLI N        G++          G+
Sbjct: 220 GCPFVCDFCSERFYLGGRYRWRPVDEMVNEL-KLIKNRGSHF-FFGES-------NFGGK 270

Query: 244 KCTFSDLLYSLSEIKGLVRL--RYTTSHPRDMSDCLIKAHGDLDVLMPYLH--LPVQSGS 299
           K    +L+      +GLV L  R++T    ++  CL K   DL      +H  + ++S  
Sbjct: 271 KSRAMELM------EGLVPLGIRWSTLWSSNL--CLDKEFLDLARKSGVMHVNIGIESID 322

Query: 300 DRILKSMNR-RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
             IL  M +  + A  Y ++ + +R    DI+ S +FI GF  E  D +RAT+  +++  
Sbjct: 323 KDILDGMRKGWNKASRYHEMFENLRQR--DISYSLNFIFGFDDEDHDIYRATISFLEEHK 380

Query: 359 YAQAFSFKYSPRLGTPGSNMLEQVDENVKAERL 391
              A+    +P  GT   N +E+    + A  +
Sbjct: 381 VPAAYFNILTPTKGTALFNRMEKAGRIINAPEI 413


>gi|317475602|ref|ZP_07934863.1| radical SAM superfamily protein [Bacteroides eggerthii 1_2_48FAA]
 gi|316908172|gb|EFV29865.1| radical SAM superfamily protein [Bacteroides eggerthii 1_2_48FAA]
          Length = 377

 Score = 40.8 bits (94), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 35/141 (24%), Positives = 65/141 (46%), Gaps = 13/141 (9%)

Query: 256 EIKGLVRLRYTTSHPRDMS-----DCLIKAHGDLDVLMPY--LHLPVQSGSDRILKSMNR 308
           E+   +R  Y   H R+++     D L + +  +   +P+  + + +Q+  D  LK +NR
Sbjct: 72  EVFETIRKYYGMEHCREITLEANPDDLTEEYTAMLQQLPFNRISMGIQTFDDATLKLLNR 131

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
           RH A +  + +   R    +  IS D I G PGETD+ ++  +     +G     ++  +
Sbjct: 132 RHDAEQAVKAVHHCRRAGFN-NISIDLIYGLPGETDERWKRDLQQAVSLGVEHISAYHLT 190

Query: 369 PRLGTPGSNMLE-----QVDE 384
              GT    +L+     +VDE
Sbjct: 191 YEEGTRIYELLQAHRIHEVDE 211


>gi|126666986|ref|ZP_01737962.1| hypothetical protein MELB17_07094 [Marinobacter sp. ELB17]
 gi|126628702|gb|EAZ99323.1| hypothetical protein MELB17_07094 [Marinobacter sp. ELB17]
          Length = 183

 Score = 40.8 bits (94), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 46/97 (47%), Gaps = 10/97 (10%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC   + DS R+       GY+ V +  DAD++V+NTC   + A ++    +G     
Sbjct: 55  SLGCPKALVDSERILTQLRLDGYDVVPTYKDADIVVVNTCGFIDAAKQESLDAIGEA--- 111

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVV 127
               I E G   V+V GC+   E ++I    P V VV
Sbjct: 112 ----ISENGK--VIVTGCMG-LEADKIRETHPGVLVV 141


>gi|222055404|ref|YP_002537766.1| radical SAM protein [Geobacter sp. FRC-32]
 gi|221564693|gb|ACM20665.1| Radical SAM domain protein [Geobacter sp. FRC-32]
          Length = 554

 Score = 40.8 bits (94), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 64/259 (24%), Positives = 104/259 (40%), Gaps = 34/259 (13%)

Query: 179 FLTIQEGCDKFCTFCVVPYTRGIEIS-RSLSQVVDEARKLIDN--GVCEITLLGQNVNAW 235
           F+    GC   C FC  P   G  +  RS   +VDE   LI N  G+   ++      A 
Sbjct: 191 FIITSRGCPAACLFCSSPLFWGKSLRLRSPRNMVDEI-TLIRNRCGLIYFSIRDDTFTAD 249

Query: 236 RGKGLDGEKCTFSDLLYSLSEIKGLVRL---RYTTSHPRDMSDCLIKAHGDLDVLMPYLH 292
           +G+ ++  +    + ++ L   +  V         +  R   +C+               
Sbjct: 250 KGRVMEFCRLLRKEKVFILWNCQSRVSAVDEELLFAMKRAGCECI--------------Q 295

Query: 293 LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352
             V+SGS RILK++ +     + R+    +R    +++I    I G   E D D  AT+ 
Sbjct: 296 FGVESGSPRILKALGKGINTEQVRKASALVRKAGMNLSIY--LITGVKNEVDADTDATIK 353

Query: 353 LVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERL--LCLQKKLREQQVSFNDACV 410
           LV+ I   QA   + SP    PG+ +  +   +VKA  +      +   E     +DA V
Sbjct: 354 LVEAI---QAHDGQVSPLAYYPGTGIFSK---DVKAGVIGREIFNEDRHEALYVRDDAFV 407

Query: 411 GQIIEVLIE---KHGKEKG 426
           G   + L+E   K GK  G
Sbjct: 408 GSSTQRLLETVAKVGKGAG 426


>gi|22537548|ref|NP_688399.1| hypothetical protein SAG1401 [Streptococcus agalactiae 2603V/R]
 gi|76797667|ref|ZP_00779936.1| radical SAM protein, TIGR01212 family [Streptococcus agalactiae
           18RS21]
 gi|22534430|gb|AAN00272.1|AE014256_4 conserved hypothetical protein TIGR01212 [Streptococcus agalactiae
           2603V/R]
 gi|76586961|gb|EAO63450.1| radical SAM protein, TIGR01212 family [Streptococcus agalactiae
           18RS21]
          Length = 311

 Score = 40.8 bits (94), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 30/55 (54%)

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDD 345
           L L +Q+  +     +NR H+   Y++ + RIR + P + I S  I G PGET D
Sbjct: 144 LELGLQTTYEATSALINRAHSYDLYKKTVKRIRELAPKVEIVSHLINGLPGETHD 198


>gi|153808724|ref|ZP_01961392.1| hypothetical protein BACCAC_03023 [Bacteroides caccae ATCC 43185]
 gi|149128550|gb|EDM19768.1| hypothetical protein BACCAC_03023 [Bacteroides caccae ATCC 43185]
          Length = 335

 Score = 40.8 bits (94), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 74/167 (44%), Gaps = 22/167 (13%)

Query: 247 FSDLLYSLSEIKGLVRLRYTT--SHPRDMSDCLIKAHGDLDVLMPY--LHLPVQSGSDRI 302
           F  +  ++ +  GL   R  T  ++P D+S    K +  +   +P+  + + +Q+  D  
Sbjct: 29  FQQIFKAIQKHYGLEDCREITLEANPDDLS----KEYLQMLSALPFNRISMGIQTFDDAT 84

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGET----DDDFRATMDLVDKIG 358
           LK + RRH A    + + R R       IS D I G PGET    + D R  + L   + 
Sbjct: 85  LKLLKRRHNARTATEAVRRCREAGYQ-NISIDLIYGLPGETKERWEKDLRQAISL--NVE 141

Query: 359 YAQAFSFKYSPRLGTPGSNMLEQ-----VDENVKAERLLCLQKKLRE 400
           +  A+   Y     TP  NML+Q     VDE+   E    L + L++
Sbjct: 142 HISAYHLIYEE--DTPIYNMLKQHQICEVDEDSSLEFFTLLIEYLQK 186


>gi|126180333|ref|YP_001048298.1| radical SAM domain-containing protein [Methanoculleus marisnigri
           JR1]
 gi|125863127|gb|ABN58316.1| Radical SAM domain protein [Methanoculleus marisnigri JR1]
          Length = 490

 Score = 40.8 bits (94), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 53/248 (21%), Positives = 91/248 (36%), Gaps = 32/248 (12%)

Query: 153 DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQ-----------EGCDKFCTFCVVPYT-RG 200
           +Y+  +  +R+  V   Y R   +  +   Q            GC   CTFC  P    G
Sbjct: 169 EYTTSEDLDRIPFVSSVYKRHLNIKDYYLSQTLYPEVQIFTGRGCPFHCTFCSWPENLMG 228

Query: 201 IEI-SRSLSQVVDEARKLIDN--GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257
            +  SR+   +VDE   +  N   V EI +        +   LD  +      L      
Sbjct: 229 RKYRSRTADNIVDEFEYICQNLPEVKEIFIEDDTYTINKNLVLDVCRKIKERKLDITWSC 288

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
                L Y+T      + C +            L +  +SG+D ILK++ +     + R 
Sbjct: 289 NARATLDYSTLQEMKSAGCRL------------LIVGYESGNDEILKTIRKGVGTQQMRA 336

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
                +  R  + I  DFI+G PGET++    T+  + ++   +    + +     PG+ 
Sbjct: 337 FTRDAK--RAKLMIHGDFIIGLPGETNETAEQTLKFIREL---KPNILQVAVATPIPGTK 391

Query: 378 MLEQVDEN 385
             +   EN
Sbjct: 392 FYDWAKEN 399


>gi|297194439|ref|ZP_06911837.1| coproporphyrinogen III oxidase [Streptomyces pristinaespiralis ATCC
           25486]
 gi|197718752|gb|EDY62660.1| coproporphyrinogen III oxidase [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 413

 Score = 40.8 bits (94), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 29/109 (26%), Positives = 51/109 (46%), Gaps = 6/109 (5%)

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           +QS    +LK ++R HT       +   R+   D  ++ D I G PGE+DDD+RA+++  
Sbjct: 160 MQSARQHVLKVLDRTHTPGRPEACVAEARAAGFD-HVNLDLIYGTPGESDDDWRASLEAA 218

Query: 355 DKIGYAQAFSFKYSPRLGTPGSNMLEQ-----VDENVKAERLLCLQKKL 398
              G     ++      GT  +  + +      D++V A+R L   + L
Sbjct: 219 VGAGPDHVSAYALIVEEGTQLARRIRRGEVPMTDDDVHADRYLIADEVL 267


>gi|206900452|ref|YP_002250957.1| Fe-S oxidoreductases family 2 [Dictyoglomus thermophilum H-6-12]
 gi|206739555|gb|ACI18613.1| Fe-S oxidoreductases family 2 [Dictyoglomus thermophilum H-6-12]
          Length = 597

 Score = 40.8 bits (94), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 45/181 (24%), Positives = 88/181 (48%), Gaps = 19/181 (10%)

Query: 182 IQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAW----R 236
           I  GC + C FC+  Y    +  RS+ +V+D  R++I N G  EI+LL  + + +    R
Sbjct: 262 IMRGCQRNCRFCLAGYIYRPKRYRSVEKVIDYTREIIKNTGYEEISLLSLSSSDYPEIER 321

Query: 237 GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQ 296
              L  E+ +   + +SL  ++      ++ S    +S   ++  G        L   ++
Sbjct: 322 LVNLLTEEFSKKMVNFSLPSLRA---DNFSLSLAEKISK--VRKSG--------LTFAIE 368

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
           SGS+R+ + +N+     ++ + ++ +   +    I   F++G P ET++D   T+DL+ K
Sbjct: 369 SGSERLRRVINKGLREEDFLKTLE-VAFQKGWNNIKLYFMLGLPTETNEDIYQTVDLIYK 427

Query: 357 I 357
           I
Sbjct: 428 I 428


>gi|254852100|ref|ZP_05241448.1| coproporphyrinogen III oxidase [Listeria monocytogenes FSL R2-503]
 gi|300765619|ref|ZP_07075598.1| oxygen-independent coproporphyrinogen III oxidase [Listeria
           monocytogenes FSL N1-017]
 gi|258605402|gb|EEW18010.1| coproporphyrinogen III oxidase [Listeria monocytogenes FSL R2-503]
 gi|300513720|gb|EFK40788.1| oxygen-independent coproporphyrinogen III oxidase [Listeria
           monocytogenes FSL N1-017]
          Length = 385

 Score = 40.8 bits (94), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 47/84 (55%), Gaps = 3/84 (3%)

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
           ++P D+S   ++A  D  V    + + VQS ++ +LK + R HT  +  Q ++ +R +  
Sbjct: 104 ANPGDLSLSKLQAMQDHSV--NRISMGVQSFNNELLKKIGRIHTVKDVYQSVENMRKIGF 161

Query: 328 DIAISSDFIVGFPGETDDDFRATM 351
           +  +S D I   PG+T+ DF+ T+
Sbjct: 162 E-NVSIDLIFSLPGQTEADFQDTL 184


>gi|238785116|ref|ZP_04629111.1| hypothetical protein yberc0001_380 [Yersinia bercovieri ATCC 43970]
 gi|238714008|gb|EEQ06025.1| hypothetical protein yberc0001_380 [Yersinia bercovieri ATCC 43970]
          Length = 300

 Score = 40.8 bits (94), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 2/69 (2%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +L L +Q+ +D+ LK +NR H    Y+Q   R R+    + +    IVG PGE       
Sbjct: 141 WLELGLQTANDKTLKRINRGHDFACYQQTARRARA--RGLKVCCHLIVGLPGEDQAQGME 198

Query: 350 TMDLVDKIG 358
           T+++V   G
Sbjct: 199 TLEMVVATG 207


>gi|170289053|ref|YP_001739291.1| radical SAM domain-containing protein [Thermotoga sp. RQ2]
 gi|170176556|gb|ACB09608.1| Radical SAM domain protein [Thermotoga sp. RQ2]
          Length = 551

 Score = 40.8 bits (94), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 43/202 (21%), Positives = 84/202 (41%), Gaps = 29/202 (14%)

Query: 180 LTIQEGCDK--FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR- 236
           + +  GC++  FC+FC  P   G   SR +  ++ E   L   G C     G+  N    
Sbjct: 178 IEVSRGCERRTFCSFCTEPLLHGRLKSRDVQAILKEIESLYRAG-CRAFRFGRAANILAF 236

Query: 237 GKGLDGEKCT---FSDLLYSLSEIKGLVRLRYT-TSHP----------RDMSDCLIKAHG 282
           G   +G K +     +L     E+   + + +T  ++P          R + + +++ + 
Sbjct: 237 GSDRNGGKPSPEILEELYSGTREVAPHLEVLHTDNANPSYLVTYEKECRKIVETIVRYNT 296

Query: 283 DLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ---IIDRIRSVR----PDIAISSDF 335
             DV        V+S  + +LK  N + +  E+ +   +++ I  VR    P +    + 
Sbjct: 297 PGDV----FSFGVESFDENVLKKNNVQGSPEEFLKAIAVVNEIGGVRVDGIPKLLPGVNL 352

Query: 336 IVGFPGETDDDFRATMDLVDKI 357
           I G PGET++  +     + +I
Sbjct: 353 IFGLPGETEETLKKNYSYLKRI 374


>gi|25011513|ref|NP_735908.1| hypothetical protein gbs1471 [Streptococcus agalactiae NEM316]
 gi|76787125|ref|YP_330042.1| radical SAM family protein [Streptococcus agalactiae A909]
 gi|77405770|ref|ZP_00782855.1| radical SAM protein, TIGR01212 family [Streptococcus agalactiae
           H36B]
 gi|24413052|emb|CAD47130.1| Unknown [Streptococcus agalactiae NEM316]
 gi|76562182|gb|ABA44766.1| radical SAM protein, TIGR01212 family [Streptococcus agalactiae
           A909]
 gi|77175627|gb|EAO78411.1| radical SAM protein, TIGR01212 family [Streptococcus agalactiae
           H36B]
          Length = 311

 Score = 40.8 bits (94), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 30/55 (54%)

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDD 345
           L L +Q+  +     +NR H+   Y++ + RIR + P + I S  I G PGET D
Sbjct: 144 LELGLQTTYEATSALINRAHSYDLYKKTVKRIRELAPKVEIVSHLINGLPGETHD 198


>gi|325968646|ref|YP_004244838.1| radical SAM protein [Vulcanisaeta moutnovskia 768-28]
 gi|323707849|gb|ADY01336.1| Radical SAM domain protein [Vulcanisaeta moutnovskia 768-28]
          Length = 472

 Score = 40.8 bits (94), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 46/195 (23%), Positives = 80/195 (41%), Gaps = 21/195 (10%)

Query: 185 GCDKFCTFCVVPYTRGIEIS-RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
           GC   C+FC   Y  G  +  RS   V DE    ++     I +   +      +   G+
Sbjct: 207 GCPYGCSFCSTSYFWGRMVRYRSAKAVADEIEDAMNTYKTNIIVFTDD------EFTLGK 260

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSD----CLIKAHGDLDVLMPYLHLPVQSGS 299
           +  + D L  L E K  + + ++     D  D      +K+HG        L+  V+SGS
Sbjct: 261 RFVY-DFLKELRERK--LDINFSCGSRVDTIDKEMMTALKSHG-----CTALYFGVESGS 312

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
              +  + +R T  +  ++    + +  D   S  F++GFP E+ +D + T+    K+  
Sbjct: 313 QETINKIGKRITLEQAVKVFQWAKEIGIDHVGS--FVIGFPWESINDMKNTIKFAMKLNP 370

Query: 360 AQAFSFKYSPRLGTP 374
             A     +P  GTP
Sbjct: 371 TYAQFTVATPYPGTP 385


>gi|257075562|ref|ZP_05569923.1| Fe-S oxidoreductase [Ferroplasma acidarmanus fer1]
          Length = 532

 Score = 40.8 bits (94), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 61/268 (22%), Positives = 109/268 (40%), Gaps = 37/268 (13%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDNG------VCEITLLGQNV 232
           L    GC   C FC V  T G    ++S  +++ E       G        +I ++  NV
Sbjct: 202 LETSRGCPYGCDFCSVTPTWGNTWRNKSNERIIKEMENAKSYGYNWIFFTDDIFIVEPNV 261

Query: 233 NAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY--TTSHPRDMSDCLIKAHGDLDVLMPY 290
                      +  F  +L        +V++R   T+ HP D+ +   KA       M  
Sbjct: 262 KH--------REALFDMILEKNLNTSWIVQMRVDVTSRHP-DLIEKAAKAG------MSI 306

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
             L V+SGS+ ILK M++     +  Q + RI S   DI +    ++G P E   D R+T
Sbjct: 307 SFLGVESGSEEILKKMHKGEFTPQSAQAV-RILSSN-DIVVIVGMMIGAPYERYRDLRST 364

Query: 351 MDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACV 410
           +    ++  A A + ++S     PG+ +    DE ++ + L  L     +         V
Sbjct: 365 VRFSRELARAGADALQFSIYTPLPGTRIF---DEALEKKSLFTLDWDRFDVLTPVMKTRV 421

Query: 411 GQIIEVLIEKHGKE--------KGKLVG 430
           G +++ +++ +           +GK++G
Sbjct: 422 GPVLDQMVQFYASYSFYIYKFLRGKIIG 449


>gi|260886569|ref|ZP_05897832.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Selenomonas sputigena ATCC 35185]
 gi|260863712|gb|EEX78212.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Selenomonas sputigena ATCC 35185]
          Length = 354

 Score = 40.8 bits (94), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 4/91 (4%)

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR-SVRPDIAISSDFIVGFPGETDDDFRA 349
           L   VQS SD +L ++ R HTA   R+  D +R + +    +S D + G PG+T  D + 
Sbjct: 87  LSFGVQSFSDALLAAIGRIHTA---REAEDAVRMAQKAGFRVSLDLMYGLPGQTLSDLKD 143

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++     +G      +  +   GTP + M E
Sbjct: 144 SVARAAALGIGHISVYGLAVEDGTPFARMEE 174


>gi|303238640|ref|ZP_07325173.1| oxygen-independent coproporphyrinogen III oxidase [Acetivibrio
           cellulolyticus CD2]
 gi|302593759|gb|EFL63474.1| oxygen-independent coproporphyrinogen III oxidase [Acetivibrio
           cellulolyticus CD2]
          Length = 380

 Score = 40.8 bits (94), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 1/91 (1%)

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
           L + +Q+  DRILK + R HTA E+       R V  D  I+ D I G P ++ +D+  T
Sbjct: 120 LSIGLQAWQDRILKMLGRIHTAKEFEDNFKLARQVGFD-NINVDLIFGIPDQSFEDWCET 178

Query: 351 MDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +  V ++G      +      GT   + LE 
Sbjct: 179 LKSVTELGPEHMSCYSLKIEEGTIFGSRLEN 209


>gi|25246556|gb|AAN72321.1| coproporphyrinogen III oxidase [Corynebacterium glutamicum]
          Length = 330

 Score = 40.8 bits (94), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 56/120 (46%), Gaps = 18/120 (15%)

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA-ISSDFIVGFPGETDDDFRA 349
           + L +QS S  +LK ++R HT    R +     + R     ++ D I G P ETDDD R 
Sbjct: 72  ISLGMQSASSSVLKVLDRTHTPG--RPVAAAKEARRAGFEHVNLDMIYGTPTETDDDVRK 129

Query: 350 TMDLV--DKIGYAQAFSFKYSPRLGTPGSNMLEQV--------DENVKAERLLCLQKKLR 399
           T+D V    + +  A+S      +   G+ M  +V        DE+V A+R   +  +LR
Sbjct: 130 TLDAVLEANVDHVSAYSL-----IVEDGTAMARKVRKGELPAPDEDVYADRFELIDARLR 184


>gi|242241031|ref|YP_002989212.1| hypothetical protein Dd703_3632 [Dickeya dadantii Ech703]
 gi|242133088|gb|ACS87390.1| conserved hypothetical protein [Dickeya dadantii Ech703]
          Length = 317

 Score = 40.8 bits (94), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 40/89 (44%), Gaps = 5/89 (5%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +L L +QS  DR L  +NR H    Y+Q   R R+    + +    IVG PGE   D RA
Sbjct: 146 WLELGLQSAHDRTLHRINRGHDFACYQQTARRARA--RGLKVCCHLIVGLPGE---DKRA 200

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
            +  +D++        K  P     GS M
Sbjct: 201 CLMTLDRVADTGVEGIKLHPLHVVEGSIM 229


>gi|330839598|ref|YP_004414178.1| oxygen-independent coproporphyrinogen III oxidase [Selenomonas
           sputigena ATCC 35185]
 gi|329747362|gb|AEC00719.1| oxygen-independent coproporphyrinogen III oxidase [Selenomonas
           sputigena ATCC 35185]
          Length = 385

 Score = 40.8 bits (94), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 4/91 (4%)

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR-SVRPDIAISSDFIVGFPGETDDDFRA 349
           L   VQS SD +L ++ R HTA   R+  D +R + +    +S D + G PG+T  D + 
Sbjct: 118 LSFGVQSFSDALLAAIGRIHTA---REAEDAVRMAQKAGFRVSLDLMYGLPGQTLSDLKD 174

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++     +G      +  +   GTP + M E
Sbjct: 175 SVARAAALGIGHISVYGLAVEDGTPFARMEE 205


>gi|77918729|ref|YP_356544.1| Fe-S oxidoreductase [Pelobacter carbinolicus DSM 2380]
 gi|77544812|gb|ABA88374.1| Fe-S oxidoreductase [Pelobacter carbinolicus DSM 2380]
          Length = 555

 Score = 40.8 bits (94), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 50/205 (24%), Positives = 88/205 (42%), Gaps = 30/205 (14%)

Query: 179 FLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLL----GQNVNA 234
           FL    GC   C FC  P   G  +  +           +D  +  I +L    G NV  
Sbjct: 235 FLITSRGCPFKCVFCAEPSFHGKSVRYAD----------VDAIIGHIDMLASRYGMNVLT 284

Query: 235 WRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMP----- 289
                L  +K    +L   L+  K  + +      P  ++  LI    +L  LM      
Sbjct: 285 IYDDQLLLDKRRAKELFRRLAPYKLRIEI------PNGVTAILIDE--ELAGLMKNAGVD 336

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR-PDIAISSDFIVGFPGETDDDFR 348
            ++L ++SGS+ +LK++ ++    +  Q I  ++S+   +I + + FI GFPGET+ D +
Sbjct: 337 SIYLAIESGSESVLKNIIKKPIRLDKIQPI--VKSLHDAEIFVQAFFINGFPGETEQDRQ 394

Query: 349 ATMDLVDKIGYAQAFSFKYSPRLGT 373
            T+  + ++G   +     SP  G+
Sbjct: 395 KTLTFIKQVGIDWSLFNFASPLRGS 419


>gi|21325063|dbj|BAB99685.1| Coproporphyrinogen III oxidase and related FeS oxidoreductases
           [Corynebacterium glutamicum ATCC 13032]
          Length = 330

 Score = 40.8 bits (94), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 54/119 (45%), Gaps = 16/119 (13%)

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
           + L +QS S  +LK ++R HT           R    +  ++ D I G P ETDDD R T
Sbjct: 72  ISLGMQSASSSVLKVLDRTHTPGRPVAAAKEAREAGFE-HVNLDMIYGTPTETDDDVRKT 130

Query: 351 MDLV--DKIGYAQAFSFKYSPRLGTPGSNMLEQV--------DENVKAERLLCLQKKLR 399
           +D V    + +  A+S      +   G+ M  +V        DE+V A+R   +  +LR
Sbjct: 131 LDAVLEANVDHVSAYSL-----IVEDGTAMARKVRKGELPAPDEDVYADRFELIDARLR 184


>gi|302545465|ref|ZP_07297807.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Streptomyces hygroscopicus ATCC 53653]
 gi|302463083|gb|EFL26176.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Streptomyces himastatinicus ATCC 53653]
          Length = 413

 Score = 40.8 bits (94), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 28/116 (24%), Positives = 53/116 (45%), Gaps = 6/116 (5%)

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           +QS    +LK ++R HT       +   R+   D  ++ D I G PGE+DDD+RA+++  
Sbjct: 160 MQSARQHVLKVLDRTHTPGRPEACVAEARAAGFD-HVNLDLIYGTPGESDDDWRASLEAA 218

Query: 355 DKIGYAQAFSFKYSPRLGTPGSNMLEQ-----VDENVKAERLLCLQKKLREQQVSF 405
              G     ++      GT  +  + +      D++  A+R L  ++ L     ++
Sbjct: 219 LGAGPDHVSAYALIVEEGTQLARRIRRGEVPMTDDDAHADRYLIAEEMLSAAGFAW 274


>gi|160937836|ref|ZP_02085195.1| hypothetical protein CLOBOL_02728 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439275|gb|EDP17028.1| hypothetical protein CLOBOL_02728 [Clostridium bolteae ATCC
           BAA-613]
          Length = 612

 Score = 40.8 bits (94), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 39/174 (22%), Positives = 73/174 (41%), Gaps = 18/174 (10%)

Query: 185 GCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK 244
           GC   C++C+    + +   RSL  V+DE    ++ GV ++  + +  N         +K
Sbjct: 228 GCPFSCSYCLSSIDKSVRF-RSLELVLDELAYFLEAGVPQVKFVDRTFNC-------NKK 279

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCL----IKAHGDLDVLMPYLHLPVQSGSD 300
              +   +  S   G+    +  +     +D L    I+  G +   +  L + VQS + 
Sbjct: 280 HAMAIWRFIQSHDNGVTNFHFEIA-----ADLLDQEEIELLGQMRPGLVQLEIGVQSTNP 334

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
             LK+++R+    E R+I   I     ++    D I G P E  + FR + + V
Sbjct: 335 DTLKAIHRKTDIDEIRRITGTINQAH-NVHQHLDLIAGLPNENLESFRHSFNQV 387


>gi|320107071|ref|YP_004182661.1| hopanoid biosynthesis associated radical SAM protein HpnJ
           [Terriglobus saanensis SP1PR4]
 gi|319925592|gb|ADV82667.1| hopanoid biosynthesis associated radical SAM protein HpnJ
           [Terriglobus saanensis SP1PR4]
          Length = 492

 Score = 40.8 bits (94), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 60/219 (27%), Positives = 87/219 (39%), Gaps = 36/219 (16%)

Query: 156 VEDKFERLSIVDGGYNRKRGVTAF-----------LTIQEGCDKFCTFCVVPYTRGIEI- 203
           VED  + L  V   Y R   VT +           L    GC   CTFC+ P T      
Sbjct: 168 VED-LDALPWVTDIYKRDMDVTKYNVPFLLHPYVSLYSTRGCPAQCTFCLWPQTLSGHAW 226

Query: 204 -SRSLSQVVDE---ARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIK 258
             RS   V  E   A++L  N V E        N  + + ++  EK     L +S +   
Sbjct: 227 RKRSTDDVAAEMKHAKELWPN-VKEFFFDDDTFNIQKARTIELCEKLKPLGLTWSSTS-- 283

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
                R TT   RD     +KA  D    +  L +  +SG  +ILK++ +  T    R  
Sbjct: 284 -----RVTTD--RDT----LKAMKDAGCRL--LIVGFESGDPQILKNIKKGATVERARDF 330

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
           +     +   + I +DFI+G PGET +  R T+D    +
Sbjct: 331 VKDCHDL--GLIIHADFILGLPGETKESIRNTIDFAKTL 367


>gi|294634689|ref|ZP_06713222.1| radical SAM protein [Edwardsiella tarda ATCC 23685]
 gi|291091935|gb|EFE24496.1| radical SAM protein [Edwardsiella tarda ATCC 23685]
          Length = 204

 Score = 40.8 bits (94), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 2/65 (3%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +L L +QS  DR L  +NR H    Y++     R+    + + S  IVG PGE+  D  A
Sbjct: 141 WLELGLQSAHDRTLHRINRGHDFACYQRTTRAARA--RGLKVCSHLIVGLPGESHTDCLA 198

Query: 350 TMDLV 354
           T+  V
Sbjct: 199 TLQRV 203


>gi|47095429|ref|ZP_00233039.1| oxygen-independent coproporphyrinogen III oxidase, putative
           [Listeria monocytogenes str. 1/2a F6854]
 gi|254898358|ref|ZP_05258282.1| coproporphyrinogen III oxidase [Listeria monocytogenes J0161]
 gi|254912150|ref|ZP_05262162.1| conserved hypothetical protein [Listeria monocytogenes J2818]
 gi|254936478|ref|ZP_05268175.1| hemN [Listeria monocytogenes F6900]
 gi|47016250|gb|EAL07173.1| oxygen-independent coproporphyrinogen III oxidase, putative
           [Listeria monocytogenes str. 1/2a F6854]
 gi|258609071|gb|EEW21679.1| hemN [Listeria monocytogenes F6900]
 gi|293590122|gb|EFF98456.1| conserved hypothetical protein [Listeria monocytogenes J2818]
          Length = 385

 Score = 40.8 bits (94), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 47/84 (55%), Gaps = 3/84 (3%)

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
           ++P D+S   ++A  D  V    + + VQS ++ +LK + R HT  +  Q ++ +R +  
Sbjct: 104 ANPGDLSLSKLQAMQDHGV--NRISMGVQSFNNELLKKIGRIHTVKDVYQSVENMRKIGF 161

Query: 328 DIAISSDFIVGFPGETDDDFRATM 351
           +  +S D I   PG+T+ DF+ T+
Sbjct: 162 E-NVSIDLIFSLPGQTEADFQDTL 184


>gi|260654645|ref|ZP_05860135.1| putative coproporphyrinogen dehydrogenase [Jonquetella anthropi
           E3_33 E1]
 gi|260630661|gb|EEX48855.1| putative coproporphyrinogen dehydrogenase [Jonquetella anthropi
           E3_33 E1]
          Length = 381

 Score = 40.8 bits (94), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 6/92 (6%)

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI-RSVR 326
           ++P  ++D LI    D  V    + L VQS  DRIL  ++R H+A    Q ++R  + VR
Sbjct: 106 ANPESLTDELIGLWQDHGVNR--VSLGVQSLDDRILSGLSRHHSAV---QALERTAQCVR 160

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
               +S D + G PG+T  +F  T+  +   G
Sbjct: 161 LGFRVSCDVMFGLPGQTLRNFAETVKRLVSTG 192


>gi|260777031|ref|ZP_05885925.1| radical SAM [Vibrio coralliilyticus ATCC BAA-450]
 gi|260606697|gb|EEX32971.1| radical SAM [Vibrio coralliilyticus ATCC BAA-450]
          Length = 403

 Score = 40.8 bits (94), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 46/209 (22%), Positives = 81/209 (38%), Gaps = 18/209 (8%)

Query: 177 TAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR 236
           T  + +  GC   C FC+VP        R ++ +V+E ++L   GV  + L   N+   R
Sbjct: 160 TWSVVVTRGCPFKCNFCLVPRFFNKFEQRPIAHIVEEVKQLKTLGVEWVELHSDNLTHDR 219

Query: 237 GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQ 296
              +        DL  +L  +K       T    RD +     +      ++    L ++
Sbjct: 220 QYAM--------DLFAALEPLKMNFYGETTVLIARDEALLAAASRAGFKAVL----LGIE 267

Query: 297 SGSDRILKSMNRRHT-AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
           + S+  LK+  +      + ++ I +IR  R  I +  DF+ GF       F+ T   V 
Sbjct: 268 TPSEAALKAQKKGFVKPVKMKEYIAKIR--RHGIEVWGDFLFGFDEHDSTIFKQTQAFVK 325

Query: 356 KIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
            I   +       P    PG+    ++DE
Sbjct: 326 DIKVDKVIPHYMIP---FPGTETFRKLDE 351


>gi|157363704|ref|YP_001470471.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Thermotoga lettingae TMO]
 gi|157314308|gb|ABV33407.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Thermotoga lettingae TMO]
          Length = 367

 Score = 40.8 bits (94), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 18/66 (27%), Positives = 38/66 (57%), Gaps = 2/66 (3%)

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
           + + +Q+  D +LK++NRRH+  E+R+      +   +I I  DFI+G P E++      
Sbjct: 115 ISMGLQAADDTVLKAVNRRHSVSEFRETCREAMNYFENINI--DFIIGLPFESEQTIWNN 172

Query: 351 MDLVDK 356
           + ++++
Sbjct: 173 LKVINE 178


>gi|315303221|ref|ZP_07873871.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Listeria ivanovii FSL F6-596]
 gi|313628403|gb|EFR96886.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Listeria ivanovii FSL F6-596]
          Length = 388

 Score = 40.4 bits (93), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 47/84 (55%), Gaps = 3/84 (3%)

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
           ++P D+S   ++A  D  V    + + VQS ++ +LK + R HT  +  Q ++ +R +  
Sbjct: 107 ANPGDLSLSKLQAMQDHGV--NRISMGVQSFNNELLKKIGRIHTVKDVYQSVENMRKIGF 164

Query: 328 DIAISSDFIVGFPGETDDDFRATM 351
           +  +S D I   PG+T+ DF+ T+
Sbjct: 165 E-NVSIDLIFSLPGQTEADFQDTL 187


>gi|167770386|ref|ZP_02442439.1| hypothetical protein ANACOL_01729 [Anaerotruncus colihominis DSM
           17241]
 gi|167667393|gb|EDS11523.1| hypothetical protein ANACOL_01729 [Anaerotruncus colihominis DSM
           17241]
          Length = 369

 Score = 40.4 bits (93), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 30/114 (26%), Positives = 53/114 (46%), Gaps = 4/114 (3%)

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
           L   +QS  DR L+++ RRHTA  +   +   R    +  +S D ++  PG+T+ D  + 
Sbjct: 115 LSFGMQSADDRQLRALGRRHTARGFASAVKAARQCGFE-HLSFDLMLATPGQTNADIDSA 173

Query: 351 MDLVDKIGYAQAFSFKYSPRLGTPGSNM---LEQVDENVKAERLLCLQKKLREQ 401
           + L  ++G     ++      GTP +      E  DE+ +A+  L   + L  Q
Sbjct: 174 VKLCAQLGAEHVSAYLLKIEQGTPFAARHIEAECPDEDGQADLYLYAVEALARQ 227


>gi|254829765|ref|ZP_05234420.1| coproporphyrinogen III oxidase [Listeria monocytogenes 10403S]
          Length = 385

 Score = 40.4 bits (93), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 47/84 (55%), Gaps = 3/84 (3%)

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
           ++P D+S   ++A  D  V    + + VQS ++ +LK + R HT  +  Q ++ +R +  
Sbjct: 104 ANPGDLSLSKLQAMQDHGV--NRISMGVQSFNNELLKKIGRIHTVKDVYQSVENMRKIGF 161

Query: 328 DIAISSDFIVGFPGETDDDFRATM 351
           +  +S D I   PG+T+ DF+ T+
Sbjct: 162 E-NVSIDLIFSLPGQTEADFQDTL 184


>gi|296242243|ref|YP_003649730.1| radical SAM domain-containing protein [Thermosphaera aggregans DSM
           11486]
 gi|296094827|gb|ADG90778.1| Radical SAM domain protein [Thermosphaera aggregans DSM 11486]
          Length = 515

 Score = 40.4 bits (93), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 50/239 (20%), Positives = 104/239 (43%), Gaps = 31/239 (12%)

Query: 148 RVVDTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKF----CTFCVVPYTRGI 201
           R +  DYS  D+   +   IV    N  R +   +    GC ++    C+FC+ P   G 
Sbjct: 158 RRLREDYSTADEAFLKGSKIVRQHPNFGRNLIVEIETFRGCPRWITGGCSFCIEP-RYGR 216

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQ-NVNAWRGKGLDGEKC------TFSDLLYSL 254
            ++R+   ++ E  +L   GV  + +  Q ++  +  + ++ E+       T   +   +
Sbjct: 217 PVTRTPESIIREIGELYSLGVRHVRIGKQPDILVYGSRQIESEEFPKPSPETLEKVFKGI 276

Query: 255 -SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP-------VQSGSDRILKSM 306
            +   GL  +     +P  ++    ++   L +++ Y H P       V+S  ++++KS 
Sbjct: 277 RNTAPGLRTIHIDNVNPGTIAKHPEESLKALKIILNY-HTPGDVAALGVESFDEKVIKSN 335

Query: 307 NRRHTA---YEYRQIIDRIRSVR-----PDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
           N +       E  ++I+R+  V+     P +    + + G PGET + FR   + ++KI
Sbjct: 336 NLKAAPDEVMEALRLINRVGRVKGWNGLPHLLPGINLLYGLPGETRETFRINEEFLNKI 394


>gi|332799528|ref|YP_004461027.1| Radical SAM domain-containing protein [Tepidanaerobacter sp. Re1]
 gi|332697263|gb|AEE91720.1| Radical SAM domain protein [Tepidanaerobacter sp. Re1]
          Length = 562

 Score = 40.4 bits (93), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 61/278 (21%), Positives = 117/278 (42%), Gaps = 30/278 (10%)

Query: 99  GDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDT----DY 154
            + ++V+ G     E EE+L+R P V+ V+  +   R  ELL+ A  GK  V++     Y
Sbjct: 81  SETVIVLGGPEVSYETEELLKRVPHVDYVILSEGEKRFCELLQ-AFNGKMPVESIDGLAY 139

Query: 155 SVEDKF------ERLSIVDGGY----NRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            + D        E + + D  +            +     GC   C FC+      +  +
Sbjct: 140 RINDNILVNIPKEYVDLNDIPFPYIDEDLEHKLVYYETSRGCPFKCAFCISSLETHVRTA 199

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
             L +V ++  K    GV  + L+ ++ N    + L        DLL  + +  G   + 
Sbjct: 200 -DLEKVKNDLLKFTQMGVKVVKLVDRSFNCNLDRAL--------DLLDIIRQFPGNT-VF 249

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +   +P  ++D  IKA   ++  + +  + +QS +   LK ++R       ++ I+ I+ 
Sbjct: 250 HCEINPELVNDRFIKALSGIEKQLQF-EVGIQSTNPETLKEISRTPNV---KRTIEGIKL 305

Query: 325 VRPD-IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
           ++   I +  D I G P E+ + F  + D V  +  A+
Sbjct: 306 LKTTGIKLHVDLIAGLPHESFERFGYSFDEVYNLHPAE 343


>gi|289450473|ref|YP_003475007.1| coproporphyrinogen dehydrogenase HemZ [Clostridiales genomosp.
           BVAB3 str. UPII9-5]
 gi|289185020|gb|ADC91445.1| coproporphyrinogen dehydrogenase HemZ [Clostridiales genomosp.
           BVAB3 str. UPII9-5]
          Length = 552

 Score = 40.4 bits (93), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 5/65 (7%)

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVR--PDIAISSDFIVGFPGETDDDFRATMDL 353
           Q+  DR L  +NR+HT     Q+I      R  P   I+ D I+G PGET+ D R T+  
Sbjct: 341 QTFHDRTLALVNRQHTV---EQLISTYEMARRMPFTNINMDLILGLPGETEADMRYTLKK 397

Query: 354 VDKIG 358
           ++ + 
Sbjct: 398 LESLA 402


>gi|255522665|ref|ZP_05389902.1| coproporphyrinogen III oxidase [Listeria monocytogenes FSL J1-175]
          Length = 363

 Score = 40.4 bits (93), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 47/84 (55%), Gaps = 3/84 (3%)

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
           ++P D+S   ++A  D  V    + + VQS ++ +LK + R HT  +  Q ++ +R +  
Sbjct: 82  ANPGDLSLSKLQAMQDHGV--NRISMGVQSFNNELLKKIGRIHTVKDVYQSVENMRKIGF 139

Query: 328 DIAISSDFIVGFPGETDDDFRATM 351
           +  +S D I   PG+T+ DF+ T+
Sbjct: 140 E-NVSIDLIFSLPGQTEADFQDTL 162


>gi|229543801|ref|ZP_04432860.1| oxygen-independent coproporphyrinogen III oxidase [Bacillus
           coagulans 36D1]
 gi|229324940|gb|EEN90616.1| oxygen-independent coproporphyrinogen III oxidase [Bacillus
           coagulans 36D1]
          Length = 377

 Score = 40.4 bits (93), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 1/75 (1%)

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
           L   VQS +DR+L+ + R H   +  + I   R +     IS D +   PG+T +DFR T
Sbjct: 115 LSFGVQSFNDRLLEKIGRTHRREDVYRTISHARKIGFS-NISMDLMFALPGQTLEDFRET 173

Query: 351 MDLVDKIGYAQAFSF 365
           +D    +G     S+
Sbjct: 174 LDEALSMGLPHYSSY 188


>gi|16803516|ref|NP_465001.1| coproporphyrinogen III oxidase [Listeria monocytogenes EGD-e]
 gi|224500505|ref|ZP_03668854.1| coproporphyrinogen III oxidase [Listeria monocytogenes Finland
           1988]
 gi|254827764|ref|ZP_05232451.1| hemN [Listeria monocytogenes FSL N3-165]
 gi|284801863|ref|YP_003413728.1| coproporphyrinogen III oxidase [Listeria monocytogenes 08-5578]
 gi|284995005|ref|YP_003416773.1| coproporphyrinogen III oxidase [Listeria monocytogenes 08-5923]
 gi|16410905|emb|CAC99554.1| hemN [Listeria monocytogenes EGD-e]
 gi|258600144|gb|EEW13469.1| hemN [Listeria monocytogenes FSL N3-165]
 gi|284057425|gb|ADB68366.1| coproporphyrinogen III oxidase [Listeria monocytogenes 08-5578]
 gi|284060472|gb|ADB71411.1| coproporphyrinogen III oxidase [Listeria monocytogenes 08-5923]
          Length = 385

 Score = 40.4 bits (93), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 47/84 (55%), Gaps = 3/84 (3%)

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
           ++P D+S   ++A  D  V    + + VQS ++ +LK + R HT  +  Q ++ +R +  
Sbjct: 104 ANPGDLSLSKLQAMQDHGV--NRISMGVQSFNNELLKKIGRIHTVKDVYQSVENMRKIGF 161

Query: 328 DIAISSDFIVGFPGETDDDFRATM 351
           +  +S D I   PG+T+ DF+ T+
Sbjct: 162 E-NVSIDLIFSLPGQTEADFQDTL 184


>gi|251777615|ref|ZP_04820535.1| radical SAM protein, family [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|243081930|gb|EES47820.1| radical SAM protein, family [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 312

 Score = 40.4 bits (93), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 2/72 (2%)

Query: 287 LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDD 346
           L  ++ L +Q+ +D++ K +NR +    +   I R++    D+ + S  I+G PGE+ DD
Sbjct: 144 LYVWVELGLQTINDKVAKKINRGYDLKVFDDAIARLKERNIDVVVHS--ILGLPGESQDD 201

Query: 347 FRATMDLVDKIG 358
              T+D +   G
Sbjct: 202 MLKTIDYIAHSG 213


>gi|332670862|ref|YP_004453870.1| oxygen-independent coproporphyrinogen III oxidase [Cellulomonas
           fimi ATCC 484]
 gi|332339900|gb|AEE46483.1| oxygen-independent coproporphyrinogen III oxidase [Cellulomonas
           fimi ATCC 484]
          Length = 417

 Score = 40.4 bits (93), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 6/74 (8%)

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR-PDIAISSDFIVGFPGETDDDFRATMD- 352
           +QS    +L ++ R H   + R+I D +R  R   +A+S D I G PGE+ DD+RA+++ 
Sbjct: 156 MQSAVPHVLATLERTH---DPRRIPDVVRWARDAGLAVSLDLIYGTPGESLDDWRASVET 212

Query: 353 -LVDKIGYAQAFSF 365
            L   + +  A++ 
Sbjct: 213 ALATGVDHVSAYAL 226


>gi|327310433|ref|YP_004337330.1| Radical SAM domain-containing protein [Thermoproteus uzoniensis
           768-20]
 gi|326946912|gb|AEA12018.1| Radical SAM domain protein [Thermoproteus uzoniensis 768-20]
          Length = 413

 Score = 40.4 bits (93), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 42/183 (22%), Positives = 75/183 (40%), Gaps = 11/183 (6%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
           + I  GC   C+FC+      +   R +  V D  R  +  G+ +I  +      +  + 
Sbjct: 156 IEIMRGCVYRCSFCLTWRLSPVRY-RGVESVADMVRAYVKRGIKDIRFVAPVGFLYGSR- 213

Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRY-----TTSHPRDMSDCLIKAHGDLDVLMPYLHLP 294
            DG       L+  L  ++      Y     + + P  ++D ++KA   L +    +   
Sbjct: 214 -DGRTPDVGSLVELLEAVRRAGGRPYLGTFPSETRPETVTDEVLKALRGL-LANRRISFG 271

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           +Q+ S+R+LK   R H         +  R  R       D I G PGE ++D RAT+  +
Sbjct: 272 LQTASERLLKLSKREHDVEVVLNAAETAR--RHGFTPIVDVIAGLPGEGEEDVRATVAAM 329

Query: 355 DKI 357
           +K+
Sbjct: 330 EKL 332


>gi|283852016|ref|ZP_06369291.1| Radical SAM domain protein [Desulfovibrio sp. FW1012B]
 gi|283572566|gb|EFC20551.1| Radical SAM domain protein [Desulfovibrio sp. FW1012B]
          Length = 477

 Score = 40.4 bits (93), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 62/263 (23%), Positives = 104/263 (39%), Gaps = 32/263 (12%)

Query: 130 PQTYYRLPELLER---ARFGKRVVDT------DYSVEDKFERLSIVDGGYNRKRGVTAFL 180
           P+ ++R PE + +   AR  +RV D       +  V D +  ++     +N    V    
Sbjct: 145 PRLWWRTPEGIRQSSAARHSERVNDLPPLPYLNKDVIDIWNYINPETHAFNYSTAV---- 200

Query: 181 TIQEGCDKFCTFCVVPYTRGIEISRSLSQ-VVDEARKLIDN-GVCEITLLGQNVNAWRGK 238
               GC   C+FC   +      S   +Q VVDE   L     +  +T         R +
Sbjct: 201 ----GCVGRCSFCY--WHDSYTYSWFDNQRVVDELESLGRQLSLRNVTFDDPTFFVGRSR 254

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
            +D        LL S    K     R  T  P  + D          ++    H+ ++SG
Sbjct: 255 TMD----LVERLLASEVRFKWRANARVDTFKPFTIEDVHTMERSGCHLI----HVGMESG 306

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           S RIL  M++  T  +   +  +  +    I +    I+G PGET DD R + +L+ +IG
Sbjct: 307 SQRILDLMHKNITVDDALDMARKFATS--SIHLRCHLIIGIPGETIDDIRRSGELITEIG 364

Query: 359 -YAQAFSFKYSPRLGTPGSNMLE 380
              + F +  +  +  PG+ + E
Sbjct: 365 RIKKEFDYTVNIFIPYPGNALTE 387


>gi|46907704|ref|YP_014093.1| coproporphyrinogen III oxidase [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|47093483|ref|ZP_00231246.1| oxygen-independent coproporphyrinogen III oxidase, putative
           [Listeria monocytogenes str. 4b H7858]
 gi|254824465|ref|ZP_05229466.1| coproporphyrinogen III oxidase [Listeria monocytogenes FSL J1-194]
 gi|254932661|ref|ZP_05266020.1| coproporphyrinogen III oxidase [Listeria monocytogenes HPB2262]
 gi|254991904|ref|ZP_05274094.1| coproporphyrinogen III oxidase [Listeria monocytogenes FSL J2-064]
 gi|46880973|gb|AAT04270.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Listeria monocytogenes serotype 4b str. F2365]
 gi|47018159|gb|EAL08929.1| oxygen-independent coproporphyrinogen III oxidase, putative
           [Listeria monocytogenes str. 4b H7858]
 gi|293584220|gb|EFF96252.1| coproporphyrinogen III oxidase [Listeria monocytogenes HPB2262]
 gi|293593702|gb|EFG01463.1| coproporphyrinogen III oxidase [Listeria monocytogenes FSL J1-194]
 gi|332311918|gb|EGJ25013.1| Oxygen-independent coproporphyrinogen III oxidase [Listeria
           monocytogenes str. Scott A]
          Length = 385

 Score = 40.4 bits (93), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 47/84 (55%), Gaps = 3/84 (3%)

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
           ++P D+S   ++A  D  V    + + VQS ++ +LK + R HT  +  Q ++ +R +  
Sbjct: 104 ANPGDLSLSKLQAMQDHGV--NRISMGVQSFNNELLKKIGRIHTVKDVYQSVENMRKIGF 161

Query: 328 DIAISSDFIVGFPGETDDDFRATM 351
           +  +S D I   PG+T+ DF+ T+
Sbjct: 162 E-NVSIDLIFSLPGQTEADFQDTL 184


>gi|253584223|ref|ZP_04861421.1| oxygen-independent coproporphyrinogen III oxidase [Fusobacterium
           varium ATCC 27725]
 gi|251834795|gb|EES63358.1| oxygen-independent coproporphyrinogen III oxidase [Fusobacterium
           varium ATCC 27725]
          Length = 305

 Score = 40.4 bits (93), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 56/246 (22%), Positives = 108/246 (43%), Gaps = 52/246 (21%)

Query: 188 KFCTFCVVPYTRGIEISRSLS--QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           K C FC    +     SR LS  + ++E  KLI+N                GK +     
Sbjct: 43  KGCIFCSESGSGDFAGSRRLSIDEQIEEQLKLIENKFPS------------GKVI----A 86

Query: 246 TFSDLLYSLSEIKGLVRLRYTT-SHPRDMS-------DCLIKAHGDL-----DVLMPYLH 292
            F +   + ++I  L ++ Y   SHPR +        DCL +   +L     +    ++ 
Sbjct: 87  YFQNFTNTYADIDYLRKIYYEALSHPRVIGLAIATRPDCLGENIIELLSEINNKYFLWVE 146

Query: 293 LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352
           L +Q+ ++ + K +NR+++   Y +  ++++S   +I   +  I+G PGE ++D   ++D
Sbjct: 147 LGLQTINEEVAKIINRQYSLKTYEEAAEKLKS--RNIKFVTHIIIGLPGEKEND---SLD 201

Query: 353 LVDKIGYAQAFSFKYSPRLGTPGSNM-LEQVDENVKAERLLCLQKKLREQQVSFNDACVG 411
                      +  +S + GT G  + L  + +N K E L     K  E ++   D  V 
Sbjct: 202 -----------TALFSEKCGTWGIKIHLLHIIKNTKLETLY----KKNELKIQKKDEYVK 246

Query: 412 QIIEVL 417
           +++++L
Sbjct: 247 KVVKIL 252


>gi|15606062|ref|NP_213439.1| hypothetical protein aq_632 [Aquifex aeolicus VF5]
 gi|2983247|gb|AAC06843.1| hypothetical protein aq_632 [Aquifex aeolicus VF5]
          Length = 317

 Score = 40.4 bits (93), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 47/86 (54%), Gaps = 6/86 (6%)

Query: 270 PRDMSDCL-IKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
           P ++ D L   A+  L+V + Y    +QS +   LK +NR+H   ++   +  +R+ + +
Sbjct: 130 PEEVLDLLEYYANKGLEVWVEY---GLQSANFETLKKINRQHGVSDFVDAV--LRTKKRN 184

Query: 329 IAISSDFIVGFPGETDDDFRATMDLV 354
           + + +  I+G PGET +DF  T  L+
Sbjct: 185 LKVCAHMIIGLPGETREDFIETAKLI 210


>gi|224501584|ref|ZP_03669891.1| coproporphyrinogen III oxidase [Listeria monocytogenes FSL R2-561]
          Length = 385

 Score = 40.4 bits (93), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 47/84 (55%), Gaps = 3/84 (3%)

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
           ++P D+S   ++A  D  V    + + VQS ++ +LK + R HT  +  Q ++ +R +  
Sbjct: 104 ANPGDLSLSKLQAMQDHGV--NRISMGVQSFNNELLKKIGRIHTVKDVYQSVENMRKIGF 161

Query: 328 DIAISSDFIVGFPGETDDDFRATM 351
           +  +S D I   PG+T+ DF+ T+
Sbjct: 162 E-NVSIDLIFSLPGQTEADFQDTL 184


>gi|217964378|ref|YP_002350056.1| oxygen-independent coproporphyrinogen III oxidase [Listeria
           monocytogenes HCC23]
 gi|217333648|gb|ACK39442.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Listeria monocytogenes HCC23]
 gi|307571057|emb|CAR84236.1| oxygen-independent coproporphyrinogen III oxidase [Listeria
           monocytogenes L99]
          Length = 385

 Score = 40.4 bits (93), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 47/84 (55%), Gaps = 3/84 (3%)

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
           ++P D+S   ++A  D  V    + + VQS ++ +LK + R HT  +  Q ++ +R +  
Sbjct: 104 ANPGDLSLSKLQAMQDHGV--NRISMGVQSFNNELLKKIGRIHTVKDVYQSVENMRKIGF 161

Query: 328 DIAISSDFIVGFPGETDDDFRATM 351
           +  +S D I   PG+T+ DF+ T+
Sbjct: 162 E-NVSIDLIFSLPGQTEADFQDTL 184


>gi|119720134|ref|YP_920629.1| radical SAM domain-containing protein [Thermofilum pendens Hrk 5]
 gi|119525254|gb|ABL78626.1| Radical SAM domain protein [Thermofilum pendens Hrk 5]
          Length = 515

 Score = 40.4 bits (93), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 46/204 (22%), Positives = 88/204 (43%), Gaps = 25/204 (12%)

Query: 172 RKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQN 231
           R   V   + I  GC + C FC V   R +     + +VV E R  +  G+  + L  ++
Sbjct: 212 RGASVNGLVEIMRGCPRGCRFCSV-TLRPLRFM-PIEKVVAEVRVNVRAGLRNVLLHSED 269

Query: 232 VNAWRGKGLDGEKCTFSDLLYSLSEI------------KGLVRLRYTTSHPRDMSDCLIK 279
           V  +   G DG K     +L   +E+              L  ++Y   + R +S  +  
Sbjct: 270 VLLY---GADGVKPRPEPVLKLHAEVLKEAPGSVAWSHASLSAVKYAEDNYRLVSRLMEM 326

Query: 280 AHGDLDVLMPYLHLPVQSGSDR----ILKSMNRRHTAYEYRQIIDRIRSVRPD--IAISS 333
                ++L   + + +++GS R    ++ +    + A E+ +++    ++  D  +  ++
Sbjct: 327 LSERQEILG--VEVGIETGSARLAREVMPAKALPYRAEEWVEVVKDAFAIMHDNRVVPAA 384

Query: 334 DFIVGFPGETDDDFRATMDLVDKI 357
             I+G PGET DD   T +LVD +
Sbjct: 385 TLILGLPGETPDDVVKTAELVDDL 408


>gi|34540292|ref|NP_904771.1| oxygen-independent coproporphyrinogen III oxidase [Porphyromonas
           gingivalis W83]
 gi|34396604|gb|AAQ65670.1| oxygen-independent coproporphyrinogen III oxidase, putative
           [Porphyromonas gingivalis W83]
          Length = 376

 Score = 40.4 bits (93), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 52/114 (45%), Gaps = 14/114 (12%)

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD--IAISSDFIVGFPGETDDDFRATMD 352
            QS  D  L  +NRRH A   RQ+++ + + R      +S D I G PG+T   ++  + 
Sbjct: 117 AQSFHDEDLHFLNRRHNA---RQVLEAVDTCRNAGLTNLSIDLIYGLPGQTPARWQENIS 173

Query: 353 LVDKIGYAQAFSFKYSPRLGTPGSNMLE-----QVDENVKAERLLCLQKKLREQ 401
            V  +      ++      GTP + +L      +VDE V  E    L + LREQ
Sbjct: 174 AVLALSPPHLSAYHLIYEEGTPLTRLLHAGKVREVDEEVSLE----LFRMLREQ 223


>gi|117924761|ref|YP_865378.1| radical SAM protein [Magnetococcus sp. MC-1]
 gi|117608517|gb|ABK43972.1| Radical SAM domain protein [Magnetococcus sp. MC-1]
          Length = 528

 Score = 40.4 bits (93), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 44/180 (24%), Positives = 77/180 (42%), Gaps = 26/180 (14%)

Query: 185 GCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGE 243
           GC   CTFC    +      RS   ++DE +++I+      I    +     +G+ L+  
Sbjct: 191 GCSFKCTFCYNVVSGQKWKGRSAKDILDEIQRIIERYQTRRIFFRDELFFHSKGRVLE-- 248

Query: 244 KCTFSDLLYSLS-EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMP--------YLHLP 294
              F DL  S +   + +  +R T     D  D  +      + LM         +L + 
Sbjct: 249 ---FLDLYTSRNCNFEWIASVRAT-----DFRDTFVD-----EALMSRMEQCGCRFLRIG 295

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
            +SGSD ILK + +       R+  + I +  P + + + F++G P E   D+ AT+DL+
Sbjct: 296 AESGSDEILKDIKKGIKVENVRRTTEII-AKHPKVKLLAGFMIGLPTEQRKDYYATLDLI 354


>gi|210631654|ref|ZP_03296958.1| hypothetical protein COLSTE_00843 [Collinsella stercoris DSM 13279]
 gi|210159968|gb|EEA90939.1| hypothetical protein COLSTE_00843 [Collinsella stercoris DSM 13279]
          Length = 2718

 Score = 40.4 bits (93), Expect = 0.63,   Method: Composition-based stats.
 Identities = 26/75 (34%), Positives = 37/75 (49%), Gaps = 10/75 (13%)

Query: 112  AEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKF----ERLSIVD 167
            AEG+    R P VN       Y   P  L+  RF KR+V  D+S  D F    E++S   
Sbjct: 1611 AEGQAEKPRVPFVN------RYKARPGALQFDRFTKRLVGRDWSAADSFEFTCEQMSFSS 1664

Query: 168  GGYNRKRGVTAFLTI 182
            GG++ K G   F+++
Sbjct: 1665 GGHDYKPGDEGFVSV 1679


>gi|290894236|ref|ZP_06557205.1| coproporphyrinogen III oxidase [Listeria monocytogenes FSL J2-071]
 gi|290556233|gb|EFD89778.1| coproporphyrinogen III oxidase [Listeria monocytogenes FSL J2-071]
          Length = 385

 Score = 40.4 bits (93), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 47/84 (55%), Gaps = 3/84 (3%)

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
           ++P D+S   ++A  D  V    + + VQS ++ +LK + R HT  +  Q ++ +R +  
Sbjct: 104 ANPGDLSLSKLQAMQDHGV--NRISMGVQSFNNELLKKIGRIHTVKDVYQSVENMRKIGF 161

Query: 328 DIAISSDFIVGFPGETDDDFRATM 351
           +  +S D I   PG+T+ DF+ T+
Sbjct: 162 E-NVSIDLIFSLPGQTEADFQDTL 184


>gi|51891621|ref|YP_074312.1| coproporphyrinogen III oxidase [Symbiobacterium thermophilum IAM
           14863]
 gi|51855310|dbj|BAD39468.1| coproporphyrinogen III oxidase [Symbiobacterium thermophilum IAM
           14863]
          Length = 416

 Score = 40.4 bits (93), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 53/127 (41%), Gaps = 17/127 (13%)

Query: 263 LRYTTSHPRDMSDCLIKAHGD---LDVLMPYLHLPVQSGSDRI-----------LKSMNR 308
           LR    H R   D  +   G+   +DV    LHL VQ+G+ R+           L+ + R
Sbjct: 79  LRGVREHFRLAPDAEVTVEGNPGTVDVEGEKLHLAVQAGATRLSLGVQARQRHLLERLGR 138

Query: 309 RHTAYEYRQIIDRIRSVRPDIA-ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
            H A +    +   R  R   A ++ D + G PG+T  DFR T+     +G     ++  
Sbjct: 139 IHDALQVEAAVKAAR--RAGFANLNLDLMYGLPGQTPADFRETVSWALGLGPTHISAYSL 196

Query: 368 SPRLGTP 374
               GTP
Sbjct: 197 IIEEGTP 203


>gi|300813753|ref|ZP_07094066.1| conserved hypothetical protein [Peptoniphilus sp. oral taxon 836
           str. F0141]
 gi|300512136|gb|EFK39323.1| conserved hypothetical protein [Peptoniphilus sp. oral taxon 836
           str. F0141]
          Length = 100

 Score = 40.4 bits (93), Expect = 0.64,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 6/92 (6%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           + + GC  N  DS  M  +     Y   N    AD+I++NTC   + A E+    +    
Sbjct: 6   IVTLGCSKNEVDSSCMMSILDKNRYSVENDPQKADIIIVNTCGFIDAAKEESIDTI---- 61

Query: 89  NLKNSRIKEGGDL-LVVVAGCVAQAEGEEILR 119
            L+ ++ KE G    ++++GC+AQ   EE+L+
Sbjct: 62  -LQMAKYKETGSCKKMILSGCLAQRYPEELLK 92


>gi|224370374|ref|YP_002604538.1| HemN2 [Desulfobacterium autotrophicum HRM2]
 gi|223693091|gb|ACN16374.1| HemN2 [Desulfobacterium autotrophicum HRM2]
          Length = 382

 Score = 40.4 bits (93), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 45/93 (48%), Gaps = 5/93 (5%)

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
           L++ VQS  D  L  M R H+A   RQ + + R    D  +  D I G PG+T+  +   
Sbjct: 115 LNIGVQSFDDERLDFMGRIHSAAVARQALQQARDTGFD-NLGLDLIYGLPGDTEGAWVKD 173

Query: 351 MD--LVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +D  LV +  +   +   Y P  GTP   ++EQ
Sbjct: 174 LDSALVFQPEHLSCYMLTYEP--GTPMHRLVEQ 204


>gi|148658313|ref|YP_001278518.1| radical SAM domain-containing protein [Roseiflexus sp. RS-1]
 gi|148570423|gb|ABQ92568.1| Radical SAM domain protein [Roseiflexus sp. RS-1]
          Length = 576

 Score = 40.4 bits (93), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 53/223 (23%), Positives = 87/223 (39%), Gaps = 39/223 (17%)

Query: 162 RLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDN 220
           ++ IV G Y        F+    GC   C +C+   T    +  RS   V++E   L + 
Sbjct: 292 KVPIVGGPYT-------FVLTSRGCPAGCRYCIKHVTYQASVRHRSPQHVLEEMYMLKEM 344

Query: 221 GVCEITLLGQNVNAWRGKGLDGEKCTFS---DLLYSLSE--IKGLVRLRYTTSHPRDMSD 275
           G+  I                 E   F+   + +Y L    IK  ++L+++ +   D  D
Sbjct: 345 GMHHIHF---------------EADLFTVKKEFVYDLCNAIIKDGIKLQWSCNSRVDFVD 389

Query: 276 ----CLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAI 331
                L+K  G   +        ++SGS+ +LK   +  T     + I   R V   I  
Sbjct: 390 EEELALMKKAGCFMIA-----WGLESGSEAVLKRARKGTTVKRIEETIHASRKV--GIKN 442

Query: 332 SSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
              FI+G PGET +  + T+ L  ++    A     +P  GTP
Sbjct: 443 WGYFIIGLPGETVETIQQTIALSKRLPLDIALFHIATPYPGTP 485


>gi|168187878|ref|ZP_02622513.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Clostridium botulinum C str. Eklund]
 gi|169294256|gb|EDS76389.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Clostridium botulinum C str. Eklund]
          Length = 375

 Score = 40.4 bits (93), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 51/226 (22%), Positives = 99/226 (43%), Gaps = 22/226 (9%)

Query: 186 CDKFCTFC-VVPY----TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL 240
           C + C +C    Y     R ++ SR+LS+ +D+    I N       +G     +    L
Sbjct: 14  CKQKCLYCDFTSYCGRENRMVDYSRALSKEIDQ----IKNKKINTIFIGGGTPTYLC--L 67

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTT-SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
            G    ++ L  S+ +++  + L +T  S+PR   +  +K    + V    + + +Q+  
Sbjct: 68  QG----WNILKKSIDKLEKSIDLEFTVESNPRTFDEEKLKFLKSIGV--NRISIGLQAWQ 121

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
           D+ LKS+ R HT  E+ +     R +     I+ D + G P +T  D++ T+  V K+  
Sbjct: 122 DKHLKSLGRIHTKDEFLKSYHMARQIGFK-NINVDLMFGIPNQTLADWKETLLEVTKLNP 180

Query: 360 AQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSF 405
                +      GTP  +  E+    + +E    L++K+ +  + F
Sbjct: 181 EHLSCYSLIIEEGTPFYDFYEKNKIELPSEE---LERKMYDYTLKF 223


>gi|328951862|ref|YP_004369196.1| oxygen-independent coproporphyrinogen III oxidase [Desulfobacca
           acetoxidans DSM 11109]
 gi|328452186|gb|AEB08015.1| oxygen-independent coproporphyrinogen III oxidase [Desulfobacca
           acetoxidans DSM 11109]
          Length = 415

 Score = 40.4 bits (93), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 1/64 (1%)

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
           L L VQS  D  L+ ++RRH A + RQ +   R    +  +  D + G PG+T D++ AT
Sbjct: 160 LSLGVQSLLDAELRFLSRRHDALQARQALSLAREAGFE-NLGVDLMYGLPGQTKDNWLAT 218

Query: 351 MDLV 354
           +D +
Sbjct: 219 LDSI 222


>gi|156740474|ref|YP_001430603.1| radical SAM domain-containing protein [Roseiflexus castenholzii DSM
           13941]
 gi|156231802|gb|ABU56585.1| Radical SAM domain protein [Roseiflexus castenholzii DSM 13941]
          Length = 576

 Score = 40.4 bits (93), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 54/224 (24%), Positives = 88/224 (39%), Gaps = 41/224 (18%)

Query: 162 RLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCV--VPYTRGIEISRSLSQVVDEARKLID 219
           ++ IV G Y        F+    GC   C +C+  V Y   +   RS   V++E   L +
Sbjct: 292 KVPIVGGPYT-------FVLTSRGCPAGCRYCIKHVTYQASVR-HRSPQHVLEEMYMLKE 343

Query: 220 NGVCEITLLGQNVNAWRGKGLDGEKCTFS---DLLYSLSE--IKGLVRLRYTTSHPRDMS 274
            G+  I                 E   F+   + +Y L    IK  ++L+++ +   D  
Sbjct: 344 MGMHHIHF---------------EADLFTVKKEFVYDLCNAIIKDGIKLQWSCNSRVDFV 388

Query: 275 DC----LIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330
           D     L+K  G   +        ++SGS+ +LK   +  T     + I   R V   I 
Sbjct: 389 DAEELALMKKAGCFMIA-----WGLESGSEAVLKRARKGTTVKRIEETITASRKV--GIK 441

Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
               FI+G PGET +  + T+ L  ++    A     +P  GTP
Sbjct: 442 NWGYFIIGLPGETVETIQQTIALSKRLPLDIALFHIATPYPGTP 485


>gi|83589446|ref|YP_429455.1| coproporphyrinogen III oxidase, anaerobic [Moorella thermoacetica
           ATCC 39073]
 gi|83572360|gb|ABC18912.1| coproporphyrinogen III oxidase, anaerobic [Moorella thermoacetica
           ATCC 39073]
          Length = 388

 Score = 40.4 bits (93), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 53/113 (46%), Gaps = 4/113 (3%)

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA-ISSDFIVGFPGETDDDFRA 349
           L L VQS  DR+LK+M R H   +  Q     R  R   A I+ D I G PG+T ++++A
Sbjct: 128 LSLGVQSFDDRLLKAMGRIHRRRDIYQAYHLAR--RAGFANINLDLIFGLPGQTLENWQA 185

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERL-LCLQKKLREQ 401
           T+     +      ++       TP   +    + N+  E L L + ++ RE+
Sbjct: 186 TLREALALQPEHLAAYSLQVEEDTPWGRLAAAGNLNLPGEELELAMYQEAREK 238


>gi|294629289|ref|ZP_06707849.1| oxygen-independent coproporphyrinogen III oxidase [Streptomyces sp.
           e14]
 gi|292832622|gb|EFF90971.1| oxygen-independent coproporphyrinogen III oxidase [Streptomyces sp.
           e14]
          Length = 413

 Score = 40.4 bits (93), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 28/109 (25%), Positives = 52/109 (47%), Gaps = 6/109 (5%)

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           +QS    +L+ ++R HT       +   R+   +  ++ D I G PGE+DDD+RA++D  
Sbjct: 160 MQSARPHVLRILDRTHTPGRPEACVAEARAAGFE-HVNLDLIYGTPGESDDDWRASLDAA 218

Query: 355 DKIGYAQAFSFKYSPRLGTPGSNMLEQ-----VDENVKAERLLCLQKKL 398
              G     ++      GT  +  + +      D++V A+R L  ++ L
Sbjct: 219 LGAGPDHVSAYALIVEEGTQLARRIRRGEVPMTDDDVHADRYLIAEEVL 267


>gi|218780005|ref|YP_002431323.1| radical SAM domain protein [Desulfatibacillum alkenivorans AK-01]
 gi|218761389|gb|ACL03855.1| Radical SAM domain protein [Desulfatibacillum alkenivorans AK-01]
          Length = 468

 Score = 40.4 bits (93), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 49/210 (23%), Positives = 83/210 (39%), Gaps = 16/210 (7%)

Query: 172 RKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQN 231
           RKR V    T   GC   C FC     R    +R    VV E   + D G+ ++ +    
Sbjct: 192 RKRPVDTLFT-SRGCPFSCGFCY--NFRKHYRARKPEDVVQELAAIRDRGIRDVEICDDT 248

Query: 232 VNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL 291
                 + L      F  ++    +I   ++ R         ++ L KA     V +  +
Sbjct: 249 FTVNEDRAL----AIFDLIVKERLDISFRIKSRVDV-----FTEKLAKAGKKAGVYL--V 297

Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351
              ++SGS +IL +MN++ T  +  +     +     IA  S +++G+PGET D    T+
Sbjct: 298 AFGMESGSQKILDAMNKKITLAQSAEACRLTKKY--GIAAHSSWVIGYPGETPDTVEDTV 355

Query: 352 DLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
             + K   A A      P   TP   + ++
Sbjct: 356 RFILKNKPATANLAVLRPYPNTPAYEIAKE 385


>gi|77413341|ref|ZP_00789535.1| radical SAM protein, TIGR01212 family [Streptococcus agalactiae
           515]
 gi|77160583|gb|EAO71700.1| radical SAM protein, TIGR01212 family [Streptococcus agalactiae
           515]
          Length = 311

 Score = 40.4 bits (93), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 30/55 (54%)

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDD 345
           L L +Q+  +     +NR H+   Y++ + R+R + P + I S  I G PGET D
Sbjct: 144 LELGLQTTYEATSALINRAHSYDLYKKTVKRVRELAPKVEIVSHLINGLPGETHD 198


>gi|126173417|ref|YP_001049566.1| putative radical SAM protein [Shewanella baltica OS155]
 gi|304409341|ref|ZP_07390961.1| conserved hypothetical protein [Shewanella baltica OS183]
 gi|307303699|ref|ZP_07583452.1| conserved hypothetical protein [Shewanella baltica BA175]
 gi|125996622|gb|ABN60697.1| conserved hypothetical radical SAM protein [Shewanella baltica
           OS155]
 gi|304351859|gb|EFM16257.1| conserved hypothetical protein [Shewanella baltica OS183]
 gi|306912597|gb|EFN43020.1| conserved hypothetical protein [Shewanella baltica BA175]
          Length = 309

 Score = 40.4 bits (93), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 2/69 (2%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +L L +Q+  D  L+ +NR H    Y   + R RS    + + +  I+G P ET  D+ A
Sbjct: 147 WLELGLQTAKDETLRKINRGHDFACYCDTVSRARS--RGLKVCTHLILGLPDETHSDYMA 204

Query: 350 TMDLVDKIG 358
           T+  V + G
Sbjct: 205 TLAAVLQQG 213


>gi|125973856|ref|YP_001037766.1| coproporphyrinogen III oxidase [Clostridium thermocellum ATCC
           27405]
 gi|281418018|ref|ZP_06249038.1| Coproporphyrinogen dehydrogenase [Clostridium thermocellum JW20]
 gi|125714081|gb|ABN52573.1| coproporphyrinogen III oxidase, anaerobic [Clostridium thermocellum
           ATCC 27405]
 gi|281409420|gb|EFB39678.1| Coproporphyrinogen dehydrogenase [Clostridium thermocellum JW20]
          Length = 505

 Score = 40.4 bits (93), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 47/100 (47%), Gaps = 13/100 (13%)

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
           QS +D ILK + R HT+ +  +     RS+  D  I+ D I G PG T +DF  TM+ + 
Sbjct: 305 QSMNDEILKKIGRLHTSKDIVEAFQLARSMGFD-NINMDVIAGLPGSTLEDFVKTMEEII 363

Query: 356 KIG----YAQAFSFKYSPRLG--------TPGSNMLEQVD 383
            +G         + K + RL         T GS + + VD
Sbjct: 364 VLGPESVTVHTMAIKRASRLNEDRENYSLTSGSEVSKMVD 403


>gi|313203090|ref|YP_004041747.1| oxygeN-independent coproporphyrinogen iii oxidase [Paludibacter
           propionicigenes WB4]
 gi|312442406|gb|ADQ78762.1| oxygen-independent coproporphyrinogen III oxidase [Paludibacter
           propionicigenes WB4]
          Length = 375

 Score = 40.4 bits (93), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 48/191 (25%), Positives = 84/191 (43%), Gaps = 17/191 (8%)

Query: 288 MPY--LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDD 345
           +P+  + + +QS  D  LK +NRRHTA +  + +   ++   D  IS D I G P ++ +
Sbjct: 109 LPFNRISIGIQSFDDNDLKRINRRHTADQAIKAVKNAQNAGFD-NISIDLIYGLPLQSIE 167

Query: 346 DFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ------VDENVKAERLLCLQKKLR 399
           D+   +D+   +      ++  +   GT      E+      +DE +  E  L L KK++
Sbjct: 168 DWEKQLDIALSLNIQHVSAYGLTYEEGTALWKQREKGLVKPIIDETMN-EMYLLLVKKMK 226

Query: 400 EQQVSFNDACVGQI-IEVLIEKHGKEKGK---LVGRSPWLQSVVLNSKNHNIGDIIKVRI 455
           E+   F    +    ++    KH     K    +G  P   S  L S+  N+   IK  I
Sbjct: 227 EK--GFEAYEISNFALDGFRSKHNSSYWKQNSYLGIGPSAHSYDLVSRQWNVAS-IKAYI 283

Query: 456 TDVKISTLYGE 466
             ++ +T Y E
Sbjct: 284 AALENNTPYFE 294


>gi|77408648|ref|ZP_00785382.1| radical SAM protein, TIGR01212 family [Streptococcus agalactiae
           COH1]
 gi|77172766|gb|EAO75901.1| radical SAM protein, TIGR01212 family [Streptococcus agalactiae
           COH1]
          Length = 311

 Score = 40.4 bits (93), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 30/55 (54%)

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDD 345
           L L +Q+  +     +NR H+   Y++ + R+R + P + I S  I G PGET D
Sbjct: 144 LELGLQTTYEATSALINRAHSYDLYKKTVKRVRELAPKVEIVSHLINGLPGETHD 198


>gi|197342834|gb|ACH69339.1| putative bacterial Fe-S oxidoreductase [Brachyspira intermedia]
          Length = 323

 Score = 40.4 bits (93), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 18/64 (28%), Positives = 37/64 (57%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +L + +QS +D   K +NR H    + ++++ I++   +I I +  I G P + +DD + 
Sbjct: 147 WLEMGLQSSNDETSKFINRGHDYKSFAEMVNHIKTNYNNIIICTHIIFGLPKKFNDDDKK 206

Query: 350 TMDL 353
           T++L
Sbjct: 207 TIEL 210


>gi|319745347|gb|EFV97661.1| TIGR01212 family radical SAM protein [Streptococcus agalactiae ATCC
           13813]
          Length = 311

 Score = 40.4 bits (93), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 30/55 (54%)

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDD 345
           L L +Q+  +     +NR H+   Y++ + R+R + P + I S  I G PGET D
Sbjct: 144 LELGLQTTYEATSALINRAHSYDLYKKTVKRVRELAPKVEIVSHLINGLPGETHD 198


>gi|163787093|ref|ZP_02181540.1| Radical SAM domain protein [Flavobacteriales bacterium ALC-1]
 gi|159876981|gb|EDP71038.1| Radical SAM domain protein [Flavobacteriales bacterium ALC-1]
          Length = 517

 Score = 40.4 bits (93), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 53/212 (25%), Positives = 92/212 (43%), Gaps = 25/212 (11%)

Query: 185 GCDKFCTFC-VVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDG 242
           GC   C+FC VVP   G   ++S   V ++ +   DN G+  I     N    + + ++ 
Sbjct: 214 GCPFTCSFCAVVPIYNGRWKAKSAQSVYNDVKYFKDNYGIDAIEFHDNNFFTSKKRVIE- 272

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
               FS+L+ +  +I      R  T +    SD  +K   D    M  + L  ++G+D I
Sbjct: 273 ----FSELIKN-DKITWWGEGRIDTIN--KYSDADLKLMKDAGCKM--IFLGAETGNDEI 323

Query: 303 LKSMNR--RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL------- 353
           LK MN+    T    +    R+  +   I     F++G P +T +   A ++        
Sbjct: 324 LKQMNKGGTQTGQGIKDFAARLYPI--GIIPEFSFVLGMPADTPEQVMAQIEWDINFIKE 381

Query: 354 VDKIGY-AQAFSFKYSPRLGTPGSNMLEQVDE 384
           + +I   A+   + YSP + T GS + EQ+ +
Sbjct: 382 IKEINPDAEIIIYLYSP-VATEGSELYEQIQK 412


>gi|144900355|emb|CAM77219.1| Coenzyme B12-binding:Radical SAM [Magnetospirillum gryphiswaldense
           MSR-1]
          Length = 295

 Score = 40.4 bits (93), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 45/84 (53%), Gaps = 7/84 (8%)

Query: 273 MSDCLIK--AHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330
           MSD  +   AH   D++    H+  + GSDRIL  + +  T  +  +  +R  +  P+I 
Sbjct: 79  MSDDFLSKLAHAGTDIM----HIGAECGSDRILALLKKNCTVDDIIEC-NRKLARHPEIK 133

Query: 331 ISSDFIVGFPGETDDDFRATMDLV 354
            + +FI+G P E+ ++ R T DL+
Sbjct: 134 AAYNFIMGIPSESLEELRGTRDLM 157


>gi|77411496|ref|ZP_00787840.1| radical SAM protein, TIGR01212 family [Streptococcus agalactiae
           CJB111]
 gi|77162422|gb|EAO73389.1| radical SAM protein, TIGR01212 family [Streptococcus agalactiae
           CJB111]
          Length = 311

 Score = 40.4 bits (93), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 30/55 (54%)

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDD 345
           L L +Q+  +     +NR H+   Y++ + RIR + P + I S  I G PGET D
Sbjct: 144 LELGLQTTYEVTSALINRAHSYDLYKKTVKRIRELAPKVEIVSHLINGLPGETHD 198


>gi|324998261|ref|ZP_08119373.1| coproporphyrinogen III oxidase, anaerobic [Pseudonocardia sp. P1]
          Length = 395

 Score = 40.4 bits (93), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 33/120 (27%), Positives = 53/120 (44%), Gaps = 10/120 (8%)

Query: 293 LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI--AISSDFIVGFPGETDDDFRAT 350
           L +QS +  +L  ++R HT     + +D  R  R      ++ D I   PGETDDD R +
Sbjct: 133 LGMQSAARHVLAVLDRTHTP---GRAVDAAREARAAGFGHVNLDLIYATPGETDDDLRRS 189

Query: 351 MDLVDKIGYAQAFSFKYSPRLGTPGS-----NMLEQVDENVKAERLLCLQKKLREQQVSF 405
            D V + G     ++      GT  +       L   D++V A R   L  +LR+  + +
Sbjct: 190 ADAVLEAGVDHVSAYALIVEDGTALARRVRRGELPAPDDDVAATRYELLDARLRDAGLRW 249


>gi|307596249|ref|YP_003902566.1| Radical SAM domain-containing protein [Vulcanisaeta distributa DSM
           14429]
 gi|307551450|gb|ADN51515.1| Radical SAM domain protein [Vulcanisaeta distributa DSM 14429]
          Length = 565

 Score = 40.4 bits (93), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 49/210 (23%), Positives = 89/210 (42%), Gaps = 24/210 (11%)

Query: 176 VTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKL-ID-NGVCEITLLGQNVN 233
           +   + +  GC + C FC  P   G+  S      +D   KL I+  G  EITL      
Sbjct: 238 IGGMVEVTRGCGRGCQFCT-PTLSGMIRSFPFEGHIDREIKLNIEVGGFKEITLHSDEFF 296

Query: 234 AWRGKGLDGEKCTFSDLL---YSLSEIKG---LVRLRYTTSHPRDMSDCLIKA---HGDL 284
            +  KG++       DL    Y L +  G    +   +TT+     +  ++K    + + 
Sbjct: 297 RYGAKGIEPNPDKVLDLTIKAYKLVKSYGDDYEITTDFTTAAVVKYAPKMVKEVSEYMNE 356

Query: 285 DVLMPYLHLPVQSGSDRILKS-MNRRHTAYEYRQIIDRIRSVRPDIAISSD--------F 335
                ++ + +++GS R+L+  M  +   Y+  Q  D +      I I +D         
Sbjct: 357 GGTWHFIEMGIETGSPRLLRLLMAGKALPYKPEQYPDVVEEA---IGILNDNYWVVVGTM 413

Query: 336 IVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           I+  PGETDDD   +++L+D++   +  +F
Sbjct: 414 ILNLPGETDDDVIKSLELLDRLKRLRVLTF 443


>gi|256004310|ref|ZP_05429292.1| Coproporphyrinogen dehydrogenase [Clostridium thermocellum DSM
           2360]
 gi|255991744|gb|EEU01844.1| Coproporphyrinogen dehydrogenase [Clostridium thermocellum DSM
           2360]
 gi|316939946|gb|ADU73980.1| Coproporphyrinogen dehydrogenase [Clostridium thermocellum DSM
           1313]
          Length = 505

 Score = 40.4 bits (93), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 47/100 (47%), Gaps = 13/100 (13%)

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
           QS +D ILK + R HT+ +  +     RS+  D  I+ D I G PG T +DF  TM+ + 
Sbjct: 305 QSMNDEILKKIGRLHTSKDIVEAFQLARSMGFD-NINMDVIAGLPGSTLEDFVKTMEEII 363

Query: 356 KIG----YAQAFSFKYSPRLG--------TPGSNMLEQVD 383
            +G         + K + RL         T GS + + VD
Sbjct: 364 VLGPESVTVHTMAIKRASRLNEDRENYSLTSGSEVSKMVD 403


>gi|219847746|ref|YP_002462179.1| Radical SAM domain-containing protein [Chloroflexus aggregans DSM
           9485]
 gi|219542005|gb|ACL23743.1| Radical SAM domain protein [Chloroflexus aggregans DSM 9485]
          Length = 583

 Score = 40.0 bits (92), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 54/226 (23%), Positives = 86/226 (38%), Gaps = 45/226 (19%)

Query: 162 RLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCV--VPYTRGIEISRSLSQVVDEARKLID 219
           ++ IV G Y        F+    GC   C +C+  V Y   +   RS   V+ E   L +
Sbjct: 291 KVPIVGGPYT-------FVLTSRGCPAGCRYCIKHVTYQSSVR-HRSPHHVLQEMIMLKE 342

Query: 220 NGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSD---- 275
            G+  I                 +K    DL +++  IK  ++LR++ +   D  D    
Sbjct: 343 MGLRHIHFEADLFTV--------KKEFVYDLCHTI--IKEGIKLRWSCNSRVDFVDEDEL 392

Query: 276 -------CLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
                  C + A G            ++SGS+ +LK   +  T     + I    S R  
Sbjct: 393 RLMRKAGCFMIAWG------------LESGSEEVLKRARKGTTVKRIEETI--AASHRAG 438

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
           I     FI+G PGET +  + T+ L  ++    A     +P  GTP
Sbjct: 439 IMNWGYFIIGLPGETVETIQQTIALSKRLPLDIALFHIATPYPGTP 484


>gi|326773566|ref|ZP_08232849.1| oxygen-independent coproporphyrinogen III oxidase [Actinomyces
           viscosus C505]
 gi|326636796|gb|EGE37699.1| oxygen-independent coproporphyrinogen III oxidase [Actinomyces
           viscosus C505]
          Length = 415

 Score = 40.0 bits (92), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 2/64 (3%)

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           +QS    +LK + R H      ++++  R  R  ++ S D I G PGE+ +D++ ++D V
Sbjct: 146 MQSAVPHVLKVLERTHEPVRVPRVVEWAR--RAGLSTSLDLIYGAPGESLEDWQRSLDAV 203

Query: 355 DKIG 358
            +IG
Sbjct: 204 TRIG 207


>gi|206895586|ref|YP_002246504.1| radical SAM domain protein [Coprothermobacter proteolyticus DSM
           5265]
 gi|206738203|gb|ACI17281.1| radical SAM domain protein [Coprothermobacter proteolyticus DSM
           5265]
          Length = 595

 Score = 40.0 bits (92), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 67/297 (22%), Positives = 119/297 (40%), Gaps = 72/297 (24%)

Query: 178 AFLTIQEGCDKFCTFC----------VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITL 227
           A + +  GC + C FC            P    +E+ +S+ Q           G  E+ L
Sbjct: 253 AVVELARGCTRGCHFCHASSYYRPVRETPPHEVVELVKSIKQT---------TGFTEVGL 303

Query: 228 LGQNVNAWRGKGLDGEKCTFSDLLYS-LSEIKGLVRLRY-TTSHPRDMSDCLIKAHGDLD 285
           L                 + S   YS LSE+  L+   + + S P    D L     D D
Sbjct: 304 L-----------------SLSTFDYSKLSEVVDLLSGEHLSMSLPSLRLDSL-----DTD 341

Query: 286 VLM---PYLHLPV----QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVG 338
           +L    P  HL +    ++GSD++ K +N+  +  E  Q +D + S          F+VG
Sbjct: 342 LLKKVDPTRHLTLTFAPEAGSDQLRKKLNKPFSNEEILQAVDLL-SKSGWSKFKFYFMVG 400

Query: 339 FPGETDDDFRATMDLVDKIGYAQAFSFKYS--PRLGTPGSNMLEQVDENVKAERLLCLQK 396
            P ET+ D    +D+V  +  A   +FK +   R+    ++ + +     + ER +  ++
Sbjct: 401 LPEETEKD---VLDIVSLLNEADTIAFKNNRRSRIHATVASFVPKPFTPFQWERQISPEE 457

Query: 397 KLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSV--VLNSKNHNIGDII 451
            L +                LI+KH K++  +  R+PW   +  VL+  +  + D++
Sbjct: 458 TLEKY--------------TLIQKHLKKQIDVSFRNPWFSLLEGVLSRSDSKVADLV 500


>gi|298529259|ref|ZP_07016662.1| Radical SAM domain protein [Desulfonatronospira thiodismutans
           ASO3-1]
 gi|298510695|gb|EFI34598.1| Radical SAM domain protein [Desulfonatronospira thiodismutans
           ASO3-1]
          Length = 565

 Score = 40.0 bits (92), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 38/63 (60%), Gaps = 2/63 (3%)

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           ++SGS +I K++N++    E +   ++  +V   I   + FI G PGET +  R +MDL+
Sbjct: 293 IESGSPKIRKALNKKTGNQEIQTAFEQ--TVACGILARAYFIYGSPGETRETIRESMDLM 350

Query: 355 DKI 357
           ++I
Sbjct: 351 ERI 353


>gi|118581050|ref|YP_902300.1| magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase
           [Pelobacter propionicus DSM 2379]
 gi|118503760|gb|ABL00243.1| Magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase
           [Pelobacter propionicus DSM 2379]
          Length = 512

 Score = 40.0 bits (92), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 72/310 (23%), Positives = 127/310 (40%), Gaps = 48/310 (15%)

Query: 100 DLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG---KRVVDTDYSV 156
           + ++V+ G  A  + +E+L +   V++V+  +    L EL ER R G     +    +  
Sbjct: 90  ECVIVMGGGHASFQYDEVLGQGSPVDLVIRGEGEATLLELAERLREGGDWSGLAGIAFRR 149

Query: 157 EDKFE------------RLSIVDGGYNRKRGV-----TAFLTIQEGCDKFCTFCVVP--Y 197
           +D+ E             L          RGV       F+    GC   CTFC  P  +
Sbjct: 150 DDRVEVTRQRVLLADLDALPFASRYLEHSRGVDIPLQAEFMITARGCPSSCTFCSSPGFW 209

Query: 198 TRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256
            R +   RS   +++E   +    G+   +L      A R + L  E C    L+ S + 
Sbjct: 210 MRRVRF-RSPENMLEEILFIRQRYGLIYFSLRDDTFTADRRRAL--EFCRL--LIRSRAH 264

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           I    + R  TS   ++   + +A  +       + + V+SGS RIL  + ++ T  +  
Sbjct: 265 ILWNCQSR-VTSLDEELLVWMKRAGCEC------VQIGVESGSPRILSLLGKQITPAQVE 317

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI----GYAQAFSFKYSPRLG 372
                ++ V   I++S   I   PGETDDD  A++ L+ +I    GY    ++       
Sbjct: 318 AAAAAVKKV--GISLSVYLISSIPGETDDDLDASIALMKRIRPDDGYVSPLAY------- 368

Query: 373 TPGSNMLEQV 382
            PG+ + ++ 
Sbjct: 369 FPGTRLFQEA 378


>gi|281424410|ref|ZP_06255323.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Prevotella oris F0302]
 gi|281401679|gb|EFB32510.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Prevotella oris F0302]
          Length = 350

 Score = 40.0 bits (92), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 55/111 (49%), Gaps = 7/111 (6%)

Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329
           P D+++        L+V    + +  Q+ ++  L+ ++RRH   E  Q ++R+R V    
Sbjct: 68  PDDVTEAFAARLATLNV--NRVSMGAQTFNNNRLRFLHRRHNREEIMQAVNRLRHVGIK- 124

Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIG--YAQAFSFKYSPRLGTPGSNM 378
            IS D + GFP ET ++++  +    K+   +  A+S  Y    GTP  +M
Sbjct: 125 NISIDLMFGFPEETMEEWQTNLQEAIKLNVEHISAYSLMYEE--GTPLFHM 173


>gi|319425540|gb|ADV53614.1| conserved hypothetical protein [Shewanella putrefaciens 200]
          Length = 309

 Score = 40.0 bits (92), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 50/104 (48%), Gaps = 6/104 (5%)

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGD-LDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
           EI GL         P ++ D L +   D +DV   +L L +Q+ +D  L+ +NR H    
Sbjct: 115 EIVGLCVGTRPDCVPDNVLDLLARYQADGVDV---WLELGLQTANDETLRRINRGHDFAC 171

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           Y   + R R+    + + +  I+G P ET  D+ AT+  V + G
Sbjct: 172 YCDTVSRARA--RGLKVCTHLILGLPNETHCDYMATLAAVLQQG 213


>gi|300087687|ref|YP_003758209.1| oxygen-independent coproporphyrinogen III oxidase [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
 gi|299527420|gb|ADJ25888.1| oxygen-independent coproporphyrinogen III oxidase [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
          Length = 380

 Score = 40.0 bits (92), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 48/104 (46%), Gaps = 6/104 (5%)

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
           L L  QS +DR L+ + R H+A    + ++  R    D  IS DFI G PG +  D+R  
Sbjct: 115 LSLGAQSLADRELEYLGRTHSADRVGEAVEEARRAGFD-NISLDFIYGLPGRSPVDWRRM 173

Query: 351 MDLVDKIGYAQAFSFKYSPRLGTPGSNML-----EQVDENVKAE 389
           +  +  +G      +  S   GTP +  +     E VD +  A+
Sbjct: 174 LADITTLGAEHLSFYGLSIDAGTPLAEAVAAGRDEPVDPDAAAD 217


>gi|226224077|ref|YP_002758184.1| coproporphyrinogen III oxidase [Listeria monocytogenes Clip81459]
 gi|225876539|emb|CAS05248.1| Putative coproporphyrinogen III oxidase [Listeria monocytogenes
           serotype 4b str. CLIP 80459]
          Length = 385

 Score = 40.0 bits (92), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 47/84 (55%), Gaps = 3/84 (3%)

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
           ++P D+S   ++A  D  V    + + VQS ++ +LK + R HT  +  Q ++ +R +  
Sbjct: 104 ANPGDLSLSKLQAMQDHRV--NRISMGVQSFNNELLKKIGRIHTVKDVYQSVENMRKIGF 161

Query: 328 DIAISSDFIVGFPGETDDDFRATM 351
           +  +S D I   PG+T+ DF+ T+
Sbjct: 162 E-NVSIDLIFSLPGQTEADFQDTL 184


>gi|86150465|ref|ZP_01068690.1| MiaB-like tRNA modifying enzyme [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|85839060|gb|EAQ56324.1| MiaB-like tRNA modifying enzyme [Campylobacter jejuni subsp. jejuni
           CF93-6]
          Length = 159

 Score = 40.0 bits (92), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 3/91 (3%)

Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAE 389
           A+ +DFIV  PGE+++ ++  +    +       +F +SPR  T  + M + ++  +  E
Sbjct: 23  ALGTDFIVAHPGESEELWQEALRNFKEFPLTHIHAFIFSPRNNTHSATMKDVINGTLAKE 82

Query: 390 RLLCLQKKLREQQVSFNDACVGQI-IEVLIE 419
           RL  L+  + +    F      Q+ +EVL+E
Sbjct: 83  RLNTLKSIVEKNNYEFRKK--NQVSLEVLVE 111


>gi|322421185|ref|YP_004200408.1| hypothetical protein GM18_3704 [Geobacter sp. M18]
 gi|320127572|gb|ADW15132.1| conserved hypothetical protein [Geobacter sp. M18]
          Length = 317

 Score = 40.0 bits (92), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 2/64 (3%)

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
           + L +QS  D IL  +NR HT  EY   ++R+     DI   +  I GFPGE    F  T
Sbjct: 151 VELGLQSMDDAILSRINRGHTLAEYLDAVERLSGRGLDIC--THLIYGFPGEKRSGFLKT 208

Query: 351 MDLV 354
             L+
Sbjct: 209 ARLI 212


>gi|328465519|gb|EGF36748.1| coproporphyrinogen III oxidase [Listeria monocytogenes 1816]
          Length = 342

 Score = 40.0 bits (92), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 47/84 (55%), Gaps = 3/84 (3%)

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
           ++P D+S   ++A  D  V    + + VQS ++ +LK + R HT  +  Q ++ +R +  
Sbjct: 104 ANPGDLSLSKLQAMQDHGV--NRISMGVQSFNNELLKKIGRIHTVKDVYQSVENMRKIGF 161

Query: 328 DIAISSDFIVGFPGETDDDFRATM 351
           +  +S D I   PG+T+ DF+ T+
Sbjct: 162 E-NVSIDLIFSLPGQTEADFQDTL 184


>gi|284008732|emb|CBA75428.1| oxygen-independent coproporphyrinogen III oxidase [Arsenophonus
           nasoniae]
          Length = 474

 Score = 40.0 bits (92), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 1/71 (1%)

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
           L    QS  D ++K+  R+HTA E+ + I    ++  ++ IS D I G  G+T DD +  
Sbjct: 194 LSFGTQSFQDHLIKACGRKHTAEEFFKTIADANTLGFEL-ISVDLIYGLFGQTVDDVKND 252

Query: 351 MDLVDKIGYAQ 361
           M+++ K+  + 
Sbjct: 253 MEIIKKLNISH 263


>gi|163783923|ref|ZP_02178895.1| hypothetical protein HG1285_11622 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880808|gb|EDP74340.1| hypothetical protein HG1285_11622 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 303

 Score = 40.0 bits (92), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 19/64 (29%), Positives = 36/64 (56%), Gaps = 1/64 (1%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           ++   +Q+ +   L+S+NR H   ++   + R +  RP+I + +  IVG PG+T +D+  
Sbjct: 139 WIEYGLQTANINTLRSINRAHGVADFVDAVLRTKK-RPNIKVCAHMIVGLPGDTYEDYVE 197

Query: 350 TMDL 353
           T  L
Sbjct: 198 TAKL 201


>gi|291007478|ref|ZP_06565451.1| coproporphyrinogen III oxidase [Saccharopolyspora erythraea NRRL
           2338]
          Length = 378

 Score = 40.0 bits (92), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 51/111 (45%), Gaps = 6/111 (5%)

Query: 293 LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352
           L +QS +  +L+ + RRHT     +     R+      ++ D I G PGETDDD RA++D
Sbjct: 123 LGMQSAAQHVLRVLERRHTPGRAVEAAREARAAGFG-HVNLDLIYGTPGETDDDLRASLD 181

Query: 353 LVDKIGYAQAFSFKYSPRLGTPGSNM-----LEQVDENVKAERLLCLQKKL 398
            V + G     ++      GT  +       L   DE+V A+R   L   L
Sbjct: 182 AVLEAGVDHVSAYSLIVEDGTAMARKVRRGDLPMPDEDVLADRYELLDGVL 232


>gi|16331072|ref|NP_441800.1| hypothetical protein sll0424 [Synechocystis sp. PCC 6803]
 gi|1653565|dbj|BAA18478.1| sll0424 [Synechocystis sp. PCC 6803]
          Length = 534

 Score = 40.0 bits (92), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 60/257 (23%), Positives = 110/257 (42%), Gaps = 33/257 (12%)

Query: 186 CDKFCTFCVVPYT----RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD 241
           C + C FC+  Y     R  +  +SL   ++   ++ D     + LLG +V         
Sbjct: 232 CPEMCRFCLASYLTLPFRPADTEKSLLPAIERGLQVSDR----LGLLGASVT-------- 279

Query: 242 GEKCTFSDLLYSLSEIK-GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300
            +   F++LL  L + +   VRL   +     + + L +           L + ++SGS+
Sbjct: 280 -QHPEFNELLDYLGKPEFDHVRLSIASVRTNTVDEKLAQTLAKRGT--KSLTIAIESGSE 336

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL---VDKI 357
           ++ + +N++ T  E      + ++      +    +VG PGET  D  AT+DL   V K+
Sbjct: 337 KLRQIINKKLTNEEILTAAQQAQAGGLQ-GLKLYGMVGVPGETRSDVEATVDLLKQVKKV 395

Query: 358 GYAQAFSF---KYSPRLGTPGSNMLEQVDENVKA-ERLLCLQKKLREQQVSFN-DACVGQ 412
                 +F    + P+  TP     +    N +A +RL  LQKKLR   V F  ++    
Sbjct: 396 APGLRLTFGCSTFVPKAHTP----FQWYGVNPEAKQRLQFLQKKLRPLGVDFRPESYNWS 451

Query: 413 IIEVLIEKHGKEKGKLV 429
           +++ LI +  +    L+
Sbjct: 452 VMQALISRGDRRLAPLL 468


>gi|325068573|ref|ZP_08127246.1| coproporphyrinogen III oxidase [Actinomyces oris K20]
          Length = 415

 Score = 40.0 bits (92), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 2/64 (3%)

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           +QS    +LK + R H      ++++  R  R  +  S D I G PGE+ +D++ ++D V
Sbjct: 146 MQSAVPHVLKVLERTHEPARVPRVVEWAR--RAGLRTSLDLIYGAPGESAEDWQRSLDAV 203

Query: 355 DKIG 358
            +IG
Sbjct: 204 TRIG 207


>gi|319440581|ref|ZP_07989737.1| coproporphyrinogen III oxidase [Corynebacterium variabile DSM
           44702]
          Length = 385

 Score = 40.0 bits (92), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 54/232 (23%), Positives = 84/232 (36%), Gaps = 17/232 (7%)

Query: 186 CDKFCTFC-VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL---- 240
           C   C +C    YT G + + S+   ++     +D    E    G     + G G     
Sbjct: 12  CTTRCGYCDFNTYTPGEDGTSSVGTYLNALEAELDRAAAEWDRPGPPSTVFLGGGTPSLL 71

Query: 241 --DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
             DG       +  SL    G      T S+P   S     A   L+     + L +QS 
Sbjct: 72  GADGLTRVLGAVRRSLGLAPGAEVT--TESNPESTSPEFFSAL--LEAGYTRISLGMQSA 127

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           S  +LK + R HT            +   D  ++ D I G P ETDDD R ++D     G
Sbjct: 128 SAHVLKVLERNHTPGRATAAAQEALAAGFD-HVNLDLIYGTPTETDDDLRRSIDAALSTG 186

Query: 359 YAQAFSFKYSPRLGTPGS-----NMLEQVDENVKAERLLCLQKKLREQQVSF 405
                ++      GT  +       L   DE+V A+R   +   L++  + +
Sbjct: 187 VDHISAYSLIVEDGTAMARKVRKGQLPAPDEDVYADRYEMIDAALQDAGMGW 238


>gi|238758291|ref|ZP_04619469.1| hypothetical protein yaldo0001_1780 [Yersinia aldovae ATCC 35236]
 gi|238703414|gb|EEP95953.1| hypothetical protein yaldo0001_1780 [Yersinia aldovae ATCC 35236]
          Length = 300

 Score = 40.0 bits (92), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 2/65 (3%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +L L +Q+ +D+ LK +NR H    Y+Q   R R+    + +    IVG PGE       
Sbjct: 141 WLELGLQTANDKTLKRINRGHDFACYQQTARRARA--RGLKVCCHLIVGLPGENQVQCME 198

Query: 350 TMDLV 354
           T+D V
Sbjct: 199 TLDNV 203


>gi|322434216|ref|YP_004216428.1| Radical SAM domain protein [Acidobacterium sp. MP5ACTX9]
 gi|321161943|gb|ADW67648.1| Radical SAM domain protein [Acidobacterium sp. MP5ACTX9]
          Length = 500

 Score = 40.0 bits (92), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 59/244 (24%), Positives = 99/244 (40%), Gaps = 37/244 (15%)

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGV--TAFLTIQEGCDKFCTFC--VVPYTRG 200
           F +RV   D   +  F+        Y +K G    A+ T   GC   C +C  +V Y R 
Sbjct: 156 FERRVQPVDTFAQPAFDMTDF--DAYEKKSGKRELAYAT-SIGCPYACNYCTDMVVYKRR 212

Query: 201 IEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
              + +   VV E   L+    +  + LL  N                 DL  +++  +G
Sbjct: 213 FN-AYAAEHVVAELTGLVKRYRITHVALLDSNFPV--------------DLKRAIAIARG 257

Query: 260 LV----RLRYTTSHPRD----MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
           +V    +  +T     D    MS   ++   D  V   Y+    +S S  +LK MN+RH 
Sbjct: 258 IVDSGVKFAWTFQASTDFICRMSQEEVQLLADSGVR--YMGFGTESTSKAVLKMMNKRHQ 315

Query: 312 AYEYRQIIDRIRSVR-PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370
             +  ++ +  R      I ++ + I+G+PGET+ D   T   +  IG     + ++SP 
Sbjct: 316 RVD--EMYETARKAELAGIRVNFNLILGYPGETEADRLETFRTMSDIG-RHFKNVRFSPN 372

Query: 371 LGTP 374
           + TP
Sbjct: 373 IFTP 376


>gi|329934630|ref|ZP_08284671.1| coproporphyrinogen III oxidase [Streptomyces griseoaurantiacus
           M045]
 gi|329305452|gb|EGG49308.1| coproporphyrinogen III oxidase [Streptomyces griseoaurantiacus
           M045]
          Length = 410

 Score = 40.0 bits (92), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 28/109 (25%), Positives = 53/109 (48%), Gaps = 6/109 (5%)

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           +QS    +LK ++R HT     + +   R+   +  ++ D I G PGE+D+D+RA++D  
Sbjct: 157 MQSARQHVLKVLDRTHTPGRPERCVAEARAAGFE-HVNLDLIYGTPGESDEDWRASLDAA 215

Query: 355 DKIGYAQAFSFKYSPRLGTPGSNMLEQ-----VDENVKAERLLCLQKKL 398
              G     ++      GT  +  + +      D++V A+R L  ++ L
Sbjct: 216 LGAGPDHVSAYALIVEEGTRLAARIRRGEVPMTDDDVHADRYLIAEEVL 264


>gi|257469865|ref|ZP_05633957.1| oxygen-independent coproporphyrinogen III oxidase [Fusobacterium
           ulcerans ATCC 49185]
 gi|317064094|ref|ZP_07928579.1| oxygen-independent coproporphyrinogen III oxidase [Fusobacterium
           ulcerans ATCC 49185]
 gi|313689770|gb|EFS26605.1| oxygen-independent coproporphyrinogen III oxidase [Fusobacterium
           ulcerans ATCC 49185]
          Length = 538

 Score = 40.0 bits (92), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 45/190 (23%), Positives = 85/190 (44%), Gaps = 41/190 (21%)

Query: 188 KFCTFCVVPYTRGIEISR--SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           K C FC    +     SR  S+++ ++E  KLI+N                GK +     
Sbjct: 43  KGCIFCSESGSGDFAGSRRLSITEQIEEQLKLIENKFPS------------GKVI----A 86

Query: 246 TFSDLLYSLSEIKGLVRLRYTT-SHPRDMS-------DCLIKAHGD--LDVL-------M 288
            F +   +  +++ L ++ Y   SHPR +        DCL    GD  +++L        
Sbjct: 87  YFQNFTNTYGDVEYLRKIYYEALSHPRVIGLAIATRPDCL----GDNIIELLNEINNKYF 142

Query: 289 PYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFR 348
            ++ L +Q+ ++++ K +NR++    Y +  ++++  + +I   +  IVG PGE +DD  
Sbjct: 143 LWIELGLQTINEKVAKIINRQYPLKTYEEAAEKLK--KYNIKFVTHIIVGLPGEEEDDPL 200

Query: 349 ATMDLVDKIG 358
            T    +K G
Sbjct: 201 NTAVYSEKCG 210


>gi|297566420|ref|YP_003685392.1| oxygen-independent coproporphyrinogen III oxidase [Meiothermus
           silvanus DSM 9946]
 gi|296850869|gb|ADH63884.1| oxygen-independent coproporphyrinogen III oxidase [Meiothermus
           silvanus DSM 9946]
          Length = 371

 Score = 40.0 bits (92), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 51/209 (24%), Positives = 92/209 (44%), Gaps = 21/209 (10%)

Query: 186 CDKFCTFCVVPYTR--GIEISRSLSQVVDEARKLIDN--GVCEITLLGQNVNAW-RGKGL 240
           C   C +C     R  G  +   L ++ +EA  L +   G  E   LG    ++ R + L
Sbjct: 11  CPTLCPYCDFHVVRRYGGVVEAYLERLAEEAAALYERFPGPLETLYLGGGTPSFLRNREL 70

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300
           +     F  L +++  I  +       ++P  ++   ++   DL V    L L VQS  D
Sbjct: 71  E---QLFRALPWNVPSIHEVT----MEANPGTLNPERLELLKDLGV--NRLSLGVQSFQD 121

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGET-DDDFRATMDLVDKIGY 359
            +L+S+ R H      + ++   S++     S D I+G PG+    D R    L   +G+
Sbjct: 122 GVLESLGRAHGRKGALRAVE--MSLQAGFRTSIDLILGLPGQDFAADLREAAAL--GVGH 177

Query: 360 AQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
             A++ +  P  GTP +    ++DE+++A
Sbjct: 178 VSAYTLQIEP--GTPFAARGVRLDEDLEA 204


>gi|262274947|ref|ZP_06052758.1| hypothetical protein VHA_001930 [Grimontia hollisae CIP 101886]
 gi|262221510|gb|EEY72824.1| hypothetical protein VHA_001930 [Grimontia hollisae CIP 101886]
          Length = 309

 Score = 40.0 bits (92), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 38/69 (55%), Gaps = 2/69 (2%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +L L +Q+ +D+ L+ +NR H    Y  I  + R++   + + +  IVG PG+T  D   
Sbjct: 142 WLELGLQTANDKTLQRINRGHDFACYDAITRKARAL--GLNVCTHLIVGLPGDTKADHIT 199

Query: 350 TMDLVDKIG 358
           T++ V + G
Sbjct: 200 TIERVIETG 208


>gi|189425003|ref|YP_001952180.1| radical SAM protein [Geobacter lovleyi SZ]
 gi|189421262|gb|ACD95660.1| Radical SAM domain protein [Geobacter lovleyi SZ]
          Length = 374

 Score = 40.0 bits (92), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 40/187 (21%), Positives = 73/187 (39%), Gaps = 13/187 (6%)

Query: 176 VTAFLTIQEGCDKFCTFC----VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQN 231
           +  F     GC   C FC    +    + +  +R +S+ V +      N   E+   G +
Sbjct: 5   IIPFFIPHAGCPHTCLFCNQHMISGAQQSVPSARQISETVQQWLGRSPNRAAEVAFYGGS 64

Query: 232 VNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL 291
                 K    ++    + +  L E + +  +R +T  P  + + ++       V    +
Sbjct: 65  FTLLPRK----QQEQLLEAVQPLLEQQKIRNIRIST-RPDALDEAVLAFLAGHKVTT--I 117

Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351
            + VQS  D +L   NR HTA +    I R+RS      + +  + G PG+T     A++
Sbjct: 118 EVGVQSLDDLVLLQSNRGHTAADSMAAIQRVRSA--GFQVGAQLLPGLPGDTRAKALASV 175

Query: 352 DLVDKIG 358
             V   G
Sbjct: 176 QGVIAAG 182


>gi|302872385|ref|YP_003841021.1| Radical SAM domain protein [Caldicellulosiruptor obsidiansis OB47]
 gi|302575244|gb|ADL43035.1| Radical SAM domain protein [Caldicellulosiruptor obsidiansis OB47]
          Length = 488

 Score = 40.0 bits (92), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 44/195 (22%), Positives = 86/195 (44%), Gaps = 29/195 (14%)

Query: 190 CTFCVVPY--TRGIEISRSLSQVVDEARKLI----DNGVCEITLLGQNVNAWRGK----- 238
           C +  +P   TR +  S S  ++  + + LI    D+ +CE+    Q +   + +     
Sbjct: 174 CLYIGIPICPTRCLYCSFSCHEMTRQVKSLIGMYTDSLICELEKTYQKIEENKNRIVAVY 233

Query: 239 ---------GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP----RDMSDCLIKAHGDLD 285
                    G++  K  F+ L  +L E   +  + +    P     ++   L++ + DL+
Sbjct: 234 FGGGCPAVIGIENIKKIFTSLFENL-EKDHIREITFEAGRPDTIDEELLQYLVEINQDLN 292

Query: 286 VLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDD 345
           V      +  Q+ +D  LK + R HT  + ++   +         I+SD I+G PGE ++
Sbjct: 293 VRFC---INPQTSNDNTLKIIGRNHTFEDIKRAFAQAYEYGFK-NINSDVILGLPGEDEN 348

Query: 346 DFRATMDLVDKIGYA 360
           D+R T++ V K+  A
Sbjct: 349 DYRKTIEDVLKLSPA 363


>gi|295105851|emb|CBL03394.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Gordonibacter pamelaeae 7-10-1-b]
          Length = 369

 Score = 40.0 bits (92), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 36/152 (23%), Positives = 72/152 (47%), Gaps = 11/152 (7%)

Query: 247 FSDLLYSLSEIKGLVRLRYTT--SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304
            S LLY+LS    L      T  ++P  +++ +++    L V    L + VQS  D +L 
Sbjct: 78  LSMLLYTLSLSMHLTPEVECTMEANPESLTERMVRDAWALGV--NRLSIGVQSFDDEVLA 135

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
            + R H+A + R+ I+   +   ++++  D + G PG+  + F A++     +G A    
Sbjct: 136 VLGRAHSADDARRAIEAAHTRFENVSV--DLMCGIPGQGAESFEASVREAAALGAAHVSV 193

Query: 365 FKYSPRLGTPG-----SNMLEQVDENVKAERL 391
           +  +    TP      +  +E+ D++V+A  +
Sbjct: 194 YPLTIEAHTPFDAAVLAGDMEEPDDDVEAAHM 225


>gi|222529926|ref|YP_002573808.1| coproporphyrinogen III oxidase [Caldicellulosiruptor bescii DSM
           6725]
 gi|222456773|gb|ACM61035.1| Coproporphyrinogen dehydrogenase [Caldicellulosiruptor bescii DSM
           6725]
          Length = 471

 Score = 40.0 bits (92), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 46/195 (23%), Positives = 86/195 (44%), Gaps = 29/195 (14%)

Query: 190 CTFCVVPY--TRGIEISRSLSQVVDEARKLI----DNGVCEITLLGQNVNAWRGK----- 238
           C +  +P   T+ +  S S  ++  + + L+    D+ +CE+    Q +   R K     
Sbjct: 157 CLYIGIPICPTKCLYCSFSCHEMTRQVKSLLGMYTDSLICELEKTYQKIEENRNKIVAIY 216

Query: 239 ---------GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV-LM 288
                    G++  K  F++L  +L E   +  + +    P  +   L++   D    L 
Sbjct: 217 FGGGSPAVLGIENIKKIFTNLFENL-EKDHIREITFEAGRPDTIDVSLLELLADQSKELN 275

Query: 289 PYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA---ISSDFIVGFPGETDD 345
             L +  QS +D  LK + R HT     + I R  ++  +     I+SD I+G PGE ++
Sbjct: 276 IRLCINPQSSNDNTLKIIGRNHTF----EDIKRAFALAKEYGFKNINSDVILGLPGEDEN 331

Query: 346 DFRATMDLVDKIGYA 360
           D++ T++ V K+  A
Sbjct: 332 DYKKTIEDVLKLSPA 346


>gi|319651617|ref|ZP_08005744.1| coproporphyrinogen III oxidase [Bacillus sp. 2_A_57_CT2]
 gi|317396684|gb|EFV77395.1| coproporphyrinogen III oxidase [Bacillus sp. 2_A_57_CT2]
          Length = 377

 Score = 40.0 bits (92), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 65/144 (45%), Gaps = 24/144 (16%)

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
           ++P D+S+  ++   D  V    L   VQ+ +D +LK + R H A +  Q I+  + V  
Sbjct: 95  ANPGDLSEEKLQILHDAGVNR--LSFGVQTFNDELLKRIGRSHRARDVFQSIEAAKKVGF 152

Query: 328 DIAISSDFIVGFPGETDDDFRATMD--LVDKIGYAQAFSFKYSP-----------RLGTP 374
           D  IS D I   PG+T  DF+ T++      I +   +S    P           +L TP
Sbjct: 153 D-NISIDLIYSLPGQTLQDFKDTLETSFTLDIAHYSGYSLIIEPKTVFYNLMRKGKLPTP 211

Query: 375 GSNMLEQVDENVKAERLLCLQKKL 398
           G        E+V+AE    L +++
Sbjct: 212 G--------EDVEAEMYELLMEQM 227


>gi|116747554|ref|YP_844241.1| putative radical SAM protein [Syntrophobacter fumaroxidans MPOB]
 gi|116696618|gb|ABK15806.1| conserved hypothetical radical SAM protein [Syntrophobacter
           fumaroxidans MPOB]
          Length = 304

 Score = 40.0 bits (92), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 2/65 (3%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +L   +QS  D  L+ +NRRH+   +   + R R+    +++ +  I+G PGET +D   
Sbjct: 142 WLEYGLQSAKDSTLERINRRHSVETFSDAVRRTRTR--GLSVCAHVILGLPGETSEDMLN 199

Query: 350 TMDLV 354
           T   +
Sbjct: 200 TARFI 204


>gi|170077963|ref|YP_001734601.1| radical SAM domain-containing protein [Synechococcus sp. PCC 7002]
 gi|169885632|gb|ACA99345.1| radical SAM domain protein [Synechococcus sp. PCC 7002]
          Length = 534

 Score = 39.7 bits (91), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 60/234 (25%), Positives = 95/234 (40%), Gaps = 36/234 (15%)

Query: 186 CDKFCTFCVVPYT----RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD 241
           C + C FC+  Y     R   + +SL   ++   K+ D     + LLG +V         
Sbjct: 230 CPEMCRFCLASYVTLPFRTANLEQSLIPAIERGLKVTDR----LGLLGASVT-------- 277

Query: 242 GEKCTFSDLLYSLSEIK-GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300
            +   F  LL  LS+ +   VRL   +     +++ L +     D     + + V+SGS+
Sbjct: 278 -QHPEFEQLLDYLSQPQYADVRLSIASVRTNTVTEKLARTLAARDTRS--ITIAVESGSE 334

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDF--IVGFPGETDDDFRAT---MDLVD 355
           R+ + +N++ T  E   II    + +        F  +VG PGE   D  AT   M  V 
Sbjct: 335 RLREIVNKKLTNDE---IITAAINAKAGGLKGIKFYGMVGIPGEEMADVEATVAMMQAVK 391

Query: 356 KIGYAQAFSF---KYSPRLGTPGSNMLEQVDENVKA-ERLLCLQKKLREQQVSF 405
           K       +     + P+  TP     +    N  A +RL  LQK LR Q + F
Sbjct: 392 KAAPGLRLTLGCSTFVPKAHTP----FQWFGVNPAAKKRLQFLQKHLRSQGIEF 441


>gi|251771492|gb|EES52069.1| putative cobalamin B12-binding/Radical SAM family protein
           [Leptospirillum ferrodiazotrophum]
          Length = 627

 Score = 39.7 bits (91), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 36/141 (25%), Positives = 65/141 (46%), Gaps = 22/141 (15%)

Query: 94  RIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF-------- 145
           ++++ G + VV+ G       +E L  S  V    G +T + L E ++  R         
Sbjct: 81  KVRDAG-IPVVIGGTHVSFMADEALEYSDYVVRGEGEETLFELIEAMDGTRSIEKILGLS 139

Query: 146 ----GKRVVDTDYSVEDKFER-----LSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
               G+++ + D  +++  +       S+V+G   +KRG+ +  T   GC   CTFC VP
Sbjct: 140 YWKGGRKMHNPDRPLKEDLDSNPIPDYSLVEGWNTQKRGLISIAT-SRGCPFTCTFCSVP 198

Query: 197 --YTRGIEISRSLSQVVDEAR 215
             Y  G  +  S+ +V++E R
Sbjct: 199 GMYGHGFRM-HSIERVIEEIR 218


>gi|329941292|ref|ZP_08290571.1| coproporphyrinogen III oxidase [Streptomyces griseoaurantiacus
           M045]
 gi|329299823|gb|EGG43722.1| coproporphyrinogen III oxidase [Streptomyces griseoaurantiacus
           M045]
          Length = 460

 Score = 39.7 bits (91), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 3/80 (3%)

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR-PDIAISSDFIVGFPGETDDDFRATMDL 353
           VQS  D  L+++ R H A++ R I+ + R     DI+I  D I GFPG+   + R  + +
Sbjct: 184 VQSFDDARLRTLGRSHDAHQARTIVQQAREAGFEDISI--DLICGFPGQPSAETREAVRV 241

Query: 354 VDKIGYAQAFSFKYSPRLGT 373
              +       + Y P  GT
Sbjct: 242 ALDLPLTHVALYPYRPAHGT 261


>gi|312898876|ref|ZP_07758264.1| radical SAM domain protein [Megasphaera micronuciformis F0359]
 gi|310620038|gb|EFQ03610.1| radical SAM domain protein [Megasphaera micronuciformis F0359]
          Length = 481

 Score = 39.7 bits (91), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 37/158 (23%), Positives = 71/158 (44%), Gaps = 23/158 (14%)

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
           Q+    +L ++ RRHT  +  ++ D  R     + I++DFI G PG+T +D R  ++ V 
Sbjct: 279 QTMQQHLLDALGRRHTVRDIYRMFDYCRDAGFSV-INTDFIAGLPGQTVEDMRQNLEAVC 337

Query: 356 KIGYAQ-----------AFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKK-----LR 399
           ++               A  F+++ R   P   ++E++     AE  LC Q        R
Sbjct: 338 QLAPENVTIHTLALKKGAPLFRHTLREEIPPVQVVEEM--VTSAEESLCRQGYAPYYLYR 395

Query: 400 EQQVSFNDACVGQIIEVLIEKHG----KEKGKLVGRSP 433
           +Q ++   A +G   +  I ++     +E+  ++G  P
Sbjct: 396 QQYMAAEFANIGYAKDGTISRYNIEMMEERQTVLGVGP 433


>gi|197117048|ref|YP_002137475.1| radical SAM domain iron-sulfur cluster-binding oxidoreductase
           [Geobacter bemidjiensis Bem]
 gi|197086408|gb|ACH37679.1| radical SAM domain iron-sulfur cluster-binding oxidoreductase,
           TIGR01212 family [Geobacter bemidjiensis Bem]
          Length = 318

 Score = 39.7 bits (91), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 32/67 (47%), Gaps = 2/67 (2%)

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
           + L +QS  D IL  +NR HT  EY   +DR+      I I +  I GFPGE    F   
Sbjct: 150 VELGLQSIDDAILTGINRGHTFAEYLSTVDRLAGR--GIDICTHLIYGFPGEKRSGFVKG 207

Query: 351 MDLVDKI 357
             L+  +
Sbjct: 208 ARLISSL 214


>gi|73748031|ref|YP_307270.1| radical SAM/B12 binding domain-containing protein [Dehalococcoides
           sp. CBDB1]
 gi|73659747|emb|CAI82354.1| radical SAM/B12 binding domain protein [Dehalococcoides sp. CBDB1]
          Length = 494

 Score = 39.7 bits (91), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 45/206 (21%), Positives = 86/206 (41%), Gaps = 24/206 (11%)

Query: 180 LTIQEGCDKFCTFCV-VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK 238
           L    GC   C+FC  +P+ +G     S+ +++ +   L  N   +     ++   +  K
Sbjct: 187 LNTSRGCPFKCSFCYNIPFHQGHRADLSVERIIAQIEHLQKNYKVKFIRFFEDNFTFNRK 246

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSD---CLIKAHGDLDVLMPYLHLPV 295
            +  E C         + I   +++++ T    DMS+    L+   G   V      + V
Sbjct: 247 RMR-EFCQ--------TVIDRRIKIKWDTESRADMSEEDVALMAKAGCTSV-----GIGV 292

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRI--RSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
           ++GS R+L+ +N+     E  +   R     + P + I    ++  P ET +DF  T D+
Sbjct: 293 ETGSKRMLEYLNKGVDLDEMGRTFWRFVKHGIMPRLYI----MLAVPTETVEDFTETQDM 348

Query: 354 VDKIGYAQAFSFKYSPRLGTPGSNML 379
           + ++        ++ P  GTP  N L
Sbjct: 349 LHRMEDPPFMYMRFVPYPGTPLYNQL 374


>gi|116670786|ref|YP_831719.1| coproporphyrinogen III oxidase [Arthrobacter sp. FB24]
 gi|116610895|gb|ABK03619.1| coproporphyrinogen III oxidase, anaerobic [Arthrobacter sp. FB24]
          Length = 409

 Score = 39.7 bits (91), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 2/64 (3%)

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           +QS    +LK ++R HT     Q++   R     +A+S D I G PGE+ +D+R +++  
Sbjct: 156 MQSAVPHVLKVLDRTHTPSRVPQVVQWARDA--GLAVSLDLIYGTPGESLEDWRYSLETA 213

Query: 355 DKIG 358
              G
Sbjct: 214 LSYG 217


>gi|271963813|ref|YP_003338009.1| coproporphyrinogen dehydrogenase [Streptosporangium roseum DSM
           43021]
 gi|270506988|gb|ACZ85266.1| Coproporphyrinogen dehydrogenase [Streptosporangium roseum DSM
           43021]
          Length = 403

 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 39/164 (23%), Positives = 66/164 (40%), Gaps = 15/164 (9%)

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           +QS  + +L+ + RRHT       +   R    D  ++ D I   PGE+DDD+RA++   
Sbjct: 153 MQSAREHVLEVLERRHTPGRPAHAVREAREAGFD-HVNLDLIYSTPGESDDDWRASLAAA 211

Query: 355 DKIG--YAQAFSF------KYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFN 406
            + G  +  A+S       + + R+       L   D++V A+R L     L E    + 
Sbjct: 212 IEAGPDHVSAYSLIVEDGTRLAARI---RRGELPMPDDDVAADRYLIADAMLAEAGFEWY 268

Query: 407 DACVGQIIEVLIEKHG---KEKGKLVGRSPWLQSVVLNSKNHNI 447
           +       E    +H       G   G  P   S V  ++  N+
Sbjct: 269 EVSNWATSEAGRCRHNLLYWTGGDWWGVGPGAHSHVGGTRWWNV 312


>gi|297160564|gb|ADI10276.1| coproporphyrinogen III oxidase [Streptomyces bingchenggensis BCW-1]
          Length = 410

 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 27/109 (24%), Positives = 52/109 (47%), Gaps = 6/109 (5%)

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           +QS    +L+ ++R HT       +   R+   D  ++ D I G PGE+D+D+RA+++  
Sbjct: 157 MQSARQHVLRVLDRTHTPGRPEACVAEARAAGFD-HVNLDLIYGTPGESDEDWRASLEAA 215

Query: 355 DKIGYAQAFSFKYSPRLGTPGSNMLEQ-----VDENVKAERLLCLQKKL 398
              G     ++      GT  +  + +      D++V A+R L  ++ L
Sbjct: 216 LGAGPDHVSAYALIVEEGTQLARRIRRGEVPMTDDDVHADRYLIAEEML 264


>gi|94969346|ref|YP_591394.1| radical SAM family Fe-S protein [Candidatus Koribacter versatilis
           Ellin345]
 gi|94551396|gb|ABF41320.1| Fe-S protein, radical SAM family [Candidatus Koribacter versatilis
           Ellin345]
          Length = 501

 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 45/188 (23%), Positives = 73/188 (38%), Gaps = 32/188 (17%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEI--SRSLSQVVDEARKLID--NGVCEITLLGQNVNAW 235
           L    GC   CTFC+ P T        RS   V  E ++ ++    V E        N  
Sbjct: 202 LYTTRGCPAQCTFCLWPQTLSGHPWRKRSSDAVASEMKRAMELFPWVREFFFDDDTFNIQ 261

Query: 236 RGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP 294
           + + ++  EK     + +S +     V   Y T      + C +   G            
Sbjct: 262 KARTIELCEKLKPLGMTWSCT---SRVTTDYETLKAMKEAGCRLLIVG------------ 306

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD-----IAISSDFIVGFPGETDDDFRA 349
            +SG  +ILK++ +  T       ++R R+   D     + +  DFI+G PGET +  R 
Sbjct: 307 YESGDPQILKNIKKGAT-------VERARAFTKDCHKLGLKVHGDFILGLPGETKETIRR 359

Query: 350 TMDLVDKI 357
           TMD   ++
Sbjct: 360 TMDFAKEL 367


>gi|222053763|ref|YP_002536125.1| radical SAM protein [Geobacter sp. FRC-32]
 gi|221563052|gb|ACM19024.1| Radical SAM domain protein [Geobacter sp. FRC-32]
          Length = 485

 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 84/184 (45%), Gaps = 27/184 (14%)

Query: 185 GCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDN-GVCEIT------LLGQNVNAWR 236
           GC   CTFC V    G  + +R    VVD+   L +  G+  I       LLG+N     
Sbjct: 221 GCPFGCTFCQVETIAGRRVRTRDPVDVVDQLFFLKERYGIGSIVFDEDNILLGEN----- 275

Query: 237 GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQ 296
               D  +  F +++    E+K +    +      D    L+K  G + +     ++ ++
Sbjct: 276 ----DYARRLFQEMIDRKLELKWIAS-AFALFLITDELLELMKESGCVGI-----NVAIE 325

Query: 297 SGSDRILKSMNRR--HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           SG++R+LK +  +         +II ++++    I   ++FI+GFPGET D+ R T+   
Sbjct: 326 SGNERVLKEIVNKPIKNLAAIPEIIAKVQA--KGIYCIANFIIGFPGETWDEIRETVAFA 383

Query: 355 DKIG 358
           ++ G
Sbjct: 384 ERCG 387


>gi|331270015|ref|YP_004396507.1| oxygen-independent coproporphyrinogen III oxidase [Clostridium
           botulinum BKT015925]
 gi|329126565|gb|AEB76510.1| oxygen-independent coproporphyrinogen III oxidase, putative
           [Clostridium botulinum BKT015925]
          Length = 343

 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 24/97 (24%), Positives = 48/97 (49%), Gaps = 1/97 (1%)

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           +Q+  D+ L+++ R HT  E+ +  +  R V     I+ D + G P ++ D+++ T+D +
Sbjct: 85  LQAWQDKHLQALGRIHTREEFLKSYNMAREVGFK-NINIDLMFGIPNQSFDEWKETLDEI 143

Query: 355 DKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERL 391
            ++       +      GTP  N+ E    N+ +E L
Sbjct: 144 TELNPEHLSCYSLIIEEGTPFYNLYENNKINLPSEEL 180


>gi|312135678|ref|YP_004003016.1| Radical SAM domain-containing protein [Caldicellulosiruptor
           owensensis OL]
 gi|311775729|gb|ADQ05216.1| Radical SAM domain protein [Caldicellulosiruptor owensensis OL]
          Length = 471

 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 41/195 (21%), Positives = 87/195 (44%), Gaps = 29/195 (14%)

Query: 190 CTFCVVPY--TRGIEISRSLSQVVDEARKLI----DNGVCEITLLGQNVNAWRGK----- 238
           C +  +P   T+ +  S S  ++  + + LI    D+ +CE+      +   + K     
Sbjct: 157 CLYIGIPICPTKCLYCSFSCHEMTRQVKSLIGMYTDSLICELEKTYHKIEENKNKIVAIY 216

Query: 239 ---------GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSD----CLIKAHGDLD 285
                    G+D  K  F +L  +L +I+ +  + +    P  + +    CL +   D +
Sbjct: 217 FGGGSPATLGIDNIKRIFVNLFKNL-KIEHIQEITFEAGRPDTIDEKLLKCLSEIKKDFN 275

Query: 286 VLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDD 345
           + +    +  Q+ +D  LK + R HT  + ++  ++         I+SD I+G PGE ++
Sbjct: 276 LRIC---INPQTSNDNTLKIIGRNHTFEDIKRAFEQANEYGFK-NINSDVILGLPGEDEN 331

Query: 346 DFRATMDLVDKIGYA 360
           D++ T++ + K+  A
Sbjct: 332 DYKNTIEDILKLSPA 346


>gi|258592996|emb|CBE69307.1| putative oxygen-independent coproporphyrinogen III oxidase (yggW)
           [NC10 bacterium 'Dutch sediment']
          Length = 397

 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 3/85 (3%)

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR-PDIAISSDFIVGFPGETDDDFRA 349
           L + VQ+  DR+L+ + R HTA+E  +     R     DI +  D + G PG+  DD+  
Sbjct: 138 LSIGVQAVQDRLLQRIGRAHTAHEAERAYRMAREAGFGDINL--DVMFGLPGQNMDDWSE 195

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTP 374
           T+D V  +      ++      GTP
Sbjct: 196 TLDWVIGVEPEHVSAYGLILEEGTP 220


>gi|237739286|ref|ZP_04569767.1| radical SAM domain-containing protein [Fusobacterium sp. 2_1_31]
 gi|229422894|gb|EEO37941.1| radical SAM domain-containing protein [Fusobacterium sp. 2_1_31]
          Length = 434

 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 67/352 (19%), Positives = 147/352 (41%), Gaps = 45/352 (12%)

Query: 40  DSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGG 99
           D  + E + F +  E +    + DL+V+ T  +    A++ Y+     R       K+G 
Sbjct: 32  DRNKHEVLLFDERIENIPMDLEVDLVVITTFTL---TAKRAYTIADNYR-------KKG- 80

Query: 100 DLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDK 159
            + VV+ G  A    EE+   +  V V      + +   L+E      + V  +  + D 
Sbjct: 81  -IYVVIGGYHASLMPEEVQEYADTVFVGSAEGNWEKF--LIELENGHPQKVYEEIKLPDI 137

Query: 160 FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV-PYTRGIEISRSLSQVVDEARKLI 218
            E +       ++K      +    GC   C FC +    +G    R +  V++E +++ 
Sbjct: 138 SEVVYDRSLFKDKKYSFVVPVQFGRGCMHQCEFCTIGSVHKGDYAHRKVELVIEEIKEIF 197

Query: 219 --DNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSD- 275
             +     I  +  N+ A + K L           +  +E+K L ++++      D++  
Sbjct: 198 RTNKRAKVIYFVDDNIFANKKKAL-----------HLFNELKKL-KIKWACQGSIDIAKD 245

Query: 276 ----CLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA-YEYRQIIDRIRSVRPDIA 330
                L+   G +++L+ + ++ + +     +K MN++    ++Y  II   +  R  I 
Sbjct: 246 EDLVKLMSESGCIEMLLGFENINIMN-----IKKMNKKSNYDFDYENIIRIFKKHR--IL 298

Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           + + +++G+  +T D F+  +D  +K    + F   ++P L  PG+   +++
Sbjct: 299 VHASYVIGYDYDTKDYFQEILDFSNK---HKFFLAGFNPALPIPGTPFYDRL 347


>gi|332159332|ref|YP_004424611.1| methyltransferase [Pyrococcus sp. NA2]
 gi|331034795|gb|AEC52607.1| methyltransferase [Pyrococcus sp. NA2]
          Length = 465

 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 83/362 (22%), Positives = 134/362 (37%), Gaps = 66/362 (18%)

Query: 45  EDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVV 104
           ED+ FS   +R+   D  D++ +         A  V     RI            D+ VV
Sbjct: 48  EDLTFSDVMKRIKRYD-PDIVGITATTSAMYDAYTVAKIAKRINE----------DVFVV 96

Query: 105 VAGCVAQAEGEEILRRSPIVNVVV---GPQTYYRLPELLERARFGKRVVDTDYSVED--- 158
           + G       E  ++  P ++ VV   G  T+  L E LE+ R  K ++   Y  E+   
Sbjct: 97  MGGPHVTFTPELTMKECPCIDAVVRGEGELTFKELVEALEKNRPLKGILGLSYRKENGKI 156

Query: 159 ------------------KFERLSI----VDGGYNRKRGVTAFLTI--QEGCDKFCTFCV 194
                              ++ L +    VDG        T F TI    GC   C FC 
Sbjct: 157 KNEPPRPLIQNIDEIPMPSYDLLPMDRYKVDG--------TPFGTIMTSRGCPFNCVFCS 208

Query: 195 VPYTRGIEI-SRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLY 252
                G      S+ +V++E   L +  G  EI  L       R + +D         + 
Sbjct: 209 SSLQFGKRWRGHSVDRVIEELSILRNEYGKKEIEFLDDTFTLNRKRAID---------IA 259

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
              + +GL      +S     ++ + KA  +      Y    ++SGS RIL  + +  T 
Sbjct: 260 MRIKREGLDITWTASSRVNTFNEKIAKAMKEGGCHTIYFG--IESGSQRILDFIGKGITP 317

Query: 313 YEYRQIIDRIRSVR-PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
              +Q ID +++ +   +     FI+GFP ET ++   T+    K+G   A     +P  
Sbjct: 318 ---KQSIDAVKTAKKAGLRTLGSFIIGFPDETREEVETTIRFAKKVGVDFAQFTIATPYP 374

Query: 372 GT 373
           GT
Sbjct: 375 GT 376


>gi|239906410|ref|YP_002953151.1| hypothetical protein DMR_17740 [Desulfovibrio magneticus RS-1]
 gi|239796276|dbj|BAH75265.1| hypothetical protein [Desulfovibrio magneticus RS-1]
          Length = 647

 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 31/121 (25%), Positives = 51/121 (42%), Gaps = 28/121 (23%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLI-----DNGVCEITLLGQNVN 233
           L I  GC   C+FC +   +G  I SRS   V+ EA +L+     D  V ++   G + N
Sbjct: 316 LNIHRGCAGGCSFCTLALHQGRAIRSRSAGSVLREAARLVDAPGFDGSVSDVG--GPSAN 373

Query: 234 AWRG--------------------KGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
            W G                    K    ++  F DLL +++E+ G+  +R  +    D+
Sbjct: 374 MWGGRCRGDMTSCQRPSCLTPTICKHFSVDQGAFVDLLEAVAEVPGVRHVRVASGWRMDL 433

Query: 274 S 274
           +
Sbjct: 434 A 434


>gi|302670708|ref|YP_003830668.1| oxygen-independent coproporphyrinogen III oxidase HemN1
           [Butyrivibrio proteoclasticus B316]
 gi|302395181|gb|ADL34086.1| oxygen-independent coproporphyrinogen III oxidase HemN1
           [Butyrivibrio proteoclasticus B316]
          Length = 527

 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 48/189 (25%), Positives = 79/189 (41%), Gaps = 33/189 (17%)

Query: 186 CDKFCTFC-VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD--- 241
           C   C +C    Y  G     + S++VD+    ++    EI  + +N   + GK LD   
Sbjct: 211 CPTTCLYCSFTSYPIG-----AYSKIVDDYISCLEK---EIDYVAEN---FEGKTLDTIY 259

Query: 242 ---GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMS------DCLIKAHGDLDVLMPYLH 292
              G   T     + L  + G ++ +  TSH ++ +      D + +        M    
Sbjct: 260 IGGGTPTTLEP--HQLERLIGYLQDKLDTSHVKEFTVESGRPDSITREKLKTMKKMGVTR 317

Query: 293 LPV--QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD--IAISSDFIVGFPGETDDDFR 348
           + V  Q+  D  L+ + RRHT     Q+ID     R +    I+ D I+G PGET +D  
Sbjct: 318 ISVNPQTMRDETLRLIGRRHTV---AQLIDSFHMAREEGFDNINMDIILGLPGETAEDVA 374

Query: 349 ATMDLVDKI 357
            TM  + K+
Sbjct: 375 YTMSEIKKL 383


>gi|291542889|emb|CBL15999.1| Coproporphyrinogen III oxidase and related Fe-S oxidoreductases
           [Ruminococcus bromii L2-63]
          Length = 479

 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 22/84 (26%), Positives = 43/84 (51%), Gaps = 5/84 (5%)

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
           Q+ ++ +LK++ R+HTA ++    +  R    D  I++D I G P +T + F+ ++D + 
Sbjct: 279 QTVNNEVLKTIGRKHTAQQFFDAFELARKCGFD-NINTDLIAGLPTDTTESFKNSLDSIV 337

Query: 356 KIG----YAQAFSFKYSPRLGTPG 375
           ++            K + RL T G
Sbjct: 338 RLNAECITVHTLCMKRASRLTTEG 361


>gi|302531872|ref|ZP_07284214.1| predicted protein [Streptomyces sp. AA4]
 gi|302440767|gb|EFL12583.1| predicted protein [Streptomyces sp. AA4]
          Length = 554

 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 69/278 (24%), Positives = 109/278 (39%), Gaps = 43/278 (15%)

Query: 157 EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS-RSLSQVVDEAR 215
           EDK + L+     Y R  G+   LT + GC   CT CV P  +G   + R    VVDE  
Sbjct: 193 EDKVDNLA-----YYRLGGLGNILT-KNGCTYACTHCVEPDAKGSRFALRPPGAVVDEMH 246

Query: 216 KLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLL--YSLSEIKGLVRLR---YTTSHP 270
            L++ GV ++       N      +   K    +++          L RLR   Y    P
Sbjct: 247 SLLEQGVHDLHTTDSEFNL----NIAHSKRVLREIIRRKRADPSSPLHRLRLWVYVQPAP 302

Query: 271 --RDMSDCLIKAH-GDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
             R+ +  L +A    ++V   ++   +  G     K   + H  Y+   + +     R 
Sbjct: 303 FDREYAALLAEAGCAGINVAPDHMRPDLLDG----WKVTGKGHRFYDVGDVAEVCSWARE 358

Query: 328 -DIAISSDFIVGFPGETD----DDFRATMDL-VDKIGYAQAFS-FKYSPRLG------TP 374
            DI    + ++G PGET     D  R+T+ L    +GY      F YSP LG      + 
Sbjct: 359 YDIPTMVEVLLGMPGETASTLRDCVRSTLALNATVVGYTLGIRVFPYSP-LGQQLAELSG 417

Query: 375 GSNMLEQVDENVKAERLL------CLQKKLREQQVSFN 406
           G++ +  V  N   E ++      C      E+Q  F+
Sbjct: 418 GTSAVPGVQSNTATEPIMLAPRRRCADAAAYERQFMFD 455


>gi|189464021|ref|ZP_03012806.1| hypothetical protein BACINT_00356 [Bacteroides intestinalis DSM
           17393]
 gi|189438594|gb|EDV07579.1| hypothetical protein BACINT_00356 [Bacteroides intestinalis DSM
           17393]
          Length = 337

 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 51/113 (45%), Gaps = 11/113 (9%)

Query: 275 DCLIKAHGDLDVLMPY--LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAIS 332
           D L + +  +   +P+  + + +Q+  D  L+ +NRRH A +  + + R R       IS
Sbjct: 57  DDLTEEYTQMLRTLPFNRISMGIQTFDDATLRLLNRRHNAAQAIEAVQRCRQAGFQ-NIS 115

Query: 333 SDFIVGFPGETDDDFRATMDLVDKIG----YAQAFSFKYSPRLGTPGSNMLEQ 381
            D I G PGET    R   DL   +     +  A+   Y    GTP   ML+Q
Sbjct: 116 IDLIYGLPGETGQ--RWAQDLQQAVSLNVEHISAYHLIYEE--GTPLYKMLQQ 164


>gi|74318205|ref|YP_315945.1| hypothetical protein Tbd_2187 [Thiobacillus denitrificans ATCC
           25259]
 gi|74057700|gb|AAZ98140.1| Conserved hypothetical protein [Thiobacillus denitrificans ATCC
           25259]
          Length = 316

 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 2/69 (2%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +L L +QS  D  L  +NR H   EYR      R++   I +    IVG PGE +     
Sbjct: 145 WLELGLQSSFDATLARVNRGHGFAEYRTATRAARAL--GIPVCCHLIVGLPGEDESHSHV 202

Query: 350 TMDLVDKIG 358
           ++D V  IG
Sbjct: 203 SLDRVLDIG 211


>gi|118579048|ref|YP_900298.1| putative radical SAM protein [Pelobacter propionicus DSM 2379]
 gi|118501758|gb|ABK98240.1| conserved hypothetical radical SAM protein [Pelobacter propionicus
           DSM 2379]
          Length = 331

 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 2/71 (2%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +L L +QS  D  L  +NRRH    + + ++  RS    + + +  I+G PGE+ DD  A
Sbjct: 169 WLELGLQSIHDTSLAYINRRHDYACFLRAVEECRSR--SLRVCAHVILGLPGESRDDMLA 226

Query: 350 TMDLVDKIGYA 360
               ++++G A
Sbjct: 227 MAGELNRLGLA 237


>gi|290579948|ref|YP_003484340.1| hypothetical protein SmuNN2025_0422 [Streptococcus mutans NN2025]
 gi|254996847|dbj|BAH87448.1| hypothetical protein [Streptococcus mutans NN2025]
          Length = 310

 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 18/55 (32%), Positives = 31/55 (56%)

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDD 345
           L L +Q+  ++  K +NR H+   Y + + R+R + P + I S  I G PGE+ +
Sbjct: 144 LELGLQTTYEKTSKLINRAHSYQLYVETVKRVRDLAPKVEIVSHLINGLPGESHE 198


>gi|317494013|ref|ZP_07952429.1| SAM protein [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316917786|gb|EFV39129.1| SAM protein [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 300

 Score = 39.7 bits (91), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 6/71 (8%)

Query: 290 YLHLPVQSGSDRILKSMNRRH--TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDF 347
           +L L +QS  D+ LK +NR H  T Y+      R R ++    + S  IVG PGE  ++ 
Sbjct: 141 WLELGLQSAQDKTLKRINRGHDFTCYQKTTRAARERGLK----VCSHLIVGLPGEGKEEC 196

Query: 348 RATMDLVDKIG 358
             T++ V   G
Sbjct: 197 MRTLEQVVNTG 207


>gi|81300461|ref|YP_400669.1| Elongator protein 3/MiaB/NifB [Synechococcus elongatus PCC 7942]
 gi|81169342|gb|ABB57682.1| Elongator protein 3/MiaB/NifB [Synechococcus elongatus PCC 7942]
          Length = 546

 Score = 39.7 bits (91), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 61/267 (22%), Positives = 109/267 (40%), Gaps = 49/267 (18%)

Query: 186 CDKFCTFCVVPYT----RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA------- 234
           C + C FC+  Y     R   +  SL   +  AR L       I LLG +V         
Sbjct: 237 CPEMCRFCLASYLTLPFRTASLEESLQPAI--ARGL--TATQRIGLLGASVTQHPEFPAL 292

Query: 235 --WRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLH 292
             W G+        F+D+  S++ ++        T+   +    ++   G        L 
Sbjct: 293 LDWLGQ------PEFTDVRLSVASVR--------TNTVTEKFASILAQRGTKS-----LT 333

Query: 293 LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352
           + V+SGS+R+ + +N++    E  +     ++      +    + G P ET+DD  AT +
Sbjct: 334 IAVESGSERLRQVINKKLAQAEITEAAVNAKAGGLQ-GLKLYGMAGVPTETEDDLLATAE 392

Query: 353 LVDKIGYAQA---FSF---KYSPRLGTPGSNMLEQVDENVKAE-RLLCLQKKLREQQVSF 405
           ++  +  A      S+    + P+  TP     +    + KAE RL  LQK+LR Q + F
Sbjct: 393 MLKGLKKAAPGLRLSYGCSTFVPKAQTP----FQWQGVSPKAEKRLQFLQKQLRPQGIEF 448

Query: 406 N-DACVGQIIEVLIEKHGKEKGKLVGR 431
             ++    +I+ LI +  +    L+ R
Sbjct: 449 RPESYSWSVIQALISRGDRRLSSLLER 475


>gi|238789736|ref|ZP_04633518.1| hypothetical protein yfred0001_28850 [Yersinia frederiksenii ATCC
           33641]
 gi|238722095|gb|EEQ13753.1| hypothetical protein yfred0001_28850 [Yersinia frederiksenii ATCC
           33641]
          Length = 309

 Score = 39.7 bits (91), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 5/89 (5%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +L L +Q+ +D+ LK +NR H    Y+Q   R R+    + +    IVG PGE   D   
Sbjct: 141 WLELGLQTANDKTLKRINRGHDFACYQQTARRARA--RGLKVCCHLIVGLPGE---DQAQ 195

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
            M+ ++K+        K  P     GS M
Sbjct: 196 GMETLEKVVATGVDGLKLHPLHIVEGSTM 224


>gi|224368674|ref|YP_002602836.1| radical SAM domain protein (Fe-S oxidoreductase) [Desulfobacterium
           autotrophicum HRM2]
 gi|223691390|gb|ACN14673.1| radical SAM domain protein (Fe-S oxidoreductase) [Desulfobacterium
           autotrophicum HRM2]
          Length = 523

 Score = 39.7 bits (91), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 43/178 (24%), Positives = 77/178 (43%), Gaps = 24/178 (13%)

Query: 185 GCDKFCTFCVVP--YTRG-IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD 241
           GC   C+FC VP  Y +G +   R+  ++  E + L++ G  E   +  N   + G G  
Sbjct: 214 GCYNHCSFCPVPSFYNQGPLWRGRTPQEIAQEMQTLVEKGAKEFYFVDPN---FIGPGKK 270

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIK---AHGDLDVLMPYLHLPVQSG 298
           G++     +L  +  IK +       + P D+ D ++    A G   +LM      ++SG
Sbjct: 271 GKE----RILKLMGLIKPMKIHFGMETRPSDLDDEILDHLVASGFTSLLM-----GIESG 321

Query: 299 SDRILKSMNRRHTAYEYRQIID--RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           S+ IL  +N+     +  Q I   R   + P++     F++     T  D R  +D +
Sbjct: 322 SETILGKINKSTGPSQGAQAISLCRRHGIEPEVG----FLMFVQDATLPDLRNNIDFL 375


>gi|24380073|ref|NP_722028.1| hypothetical protein SMU.1699c [Streptococcus mutans UA159]
 gi|24378067|gb|AAN59334.1|AE014999_2 conserved hypothetical protein [Streptococcus mutans UA159]
          Length = 310

 Score = 39.7 bits (91), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 18/55 (32%), Positives = 31/55 (56%)

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDD 345
           L L +Q+  ++  K +NR H+   Y + + R+R + P + I S  I G PGE+ +
Sbjct: 144 LELGLQTTYEKTSKLINRAHSYQLYVETVKRVRDLAPKVEIVSHLINGLPGESHE 198


>gi|239905107|ref|YP_002951846.1| hypothetical protein DMR_04690 [Desulfovibrio magneticus RS-1]
 gi|239794971|dbj|BAH73960.1| hypothetical protein [Desulfovibrio magneticus RS-1]
          Length = 334

 Score = 39.7 bits (91), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 20/70 (28%), Positives = 37/70 (52%), Gaps = 2/70 (2%)

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
           L + +QS +D  L+ + R HT  ++ +    I +    +A+++  + G PGE  +DF AT
Sbjct: 159 LEMGLQSANDATLRRIGRGHTTADFARAT--IMAADAGLAVTAHLMAGLPGEGVEDFLAT 216

Query: 351 MDLVDKIGYA 360
           +  V  +  A
Sbjct: 217 VRFVAALPIA 226


>gi|218782941|ref|YP_002434259.1| radical SAM domain protein [Desulfatibacillum alkenivorans AK-01]
 gi|218764325|gb|ACL06791.1| Radical SAM domain protein [Desulfatibacillum alkenivorans AK-01]
          Length = 479

 Score = 39.3 bits (90), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 41/68 (60%), Gaps = 4/68 (5%)

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIV-GFPGETDDDFRA 349
           + L ++SGS ++L +MN+   A    Q +  +R+++     S  +I+ G PGETD   R 
Sbjct: 304 VSLGMESGSQKMLNAMNK---AVTVEQSVRAVRALKKAGVRSLVYIMFGAPGETDQTVRQ 360

Query: 350 TMDLVDKI 357
           TMDL+++I
Sbjct: 361 TMDLLERI 368


>gi|170782116|ref|YP_001710449.1| coproporphyrinogen III oxidase [Clavibacter michiganensis subsp.
           sepedonicus]
 gi|169156685|emb|CAQ01844.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Clavibacter michiganensis subsp. sepedonicus]
          Length = 407

 Score = 39.3 bits (90), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 26/105 (24%), Positives = 52/105 (49%), Gaps = 17/105 (16%)

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD-- 352
           +QS   R+L ++ R H       ++   R+    + +S D I G PGET DD+RA+++  
Sbjct: 155 MQSAVPRVLATLERTHDPARIAPVVRGARAA--GLEVSLDLIYGTPGETIDDWRASLEQA 212

Query: 353 LVDKIGYAQAFSFKYSPRLGTPGSNMLEQV--------DENVKAE 389
           +  +  +  A++      +  PG+ +  Q+        DE+++A+
Sbjct: 213 IAQEPDHLSAYAL-----IVEPGTKLARQIRRGEVPEPDEDLQAD 252


>gi|323480535|gb|ADX79974.1| oxygen-independent coproporphyrinogen III oxidase 1 [Enterococcus
           faecalis 62]
          Length = 394

 Score = 39.3 bits (90), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 7/64 (10%)

Query: 291 LHLPVQSGSDRILKSMNRRHTA---YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDF 347
           L + VQ+  DR+LK + R+HTA   YE  + +++         +S D I   PG+T + F
Sbjct: 129 LSMGVQTFDDRLLKKIGRKHTAADVYETMKFLEKENFTN----VSIDLIYALPGQTLESF 184

Query: 348 RATM 351
           R T+
Sbjct: 185 RDTL 188


>gi|322513300|ref|ZP_08066421.1| MiaB family RNA modification enzyme [Actinobacillus ureae ATCC
           25976]
 gi|322120899|gb|EFX92751.1| MiaB family RNA modification enzyme [Actinobacillus ureae ATCC
           25976]
          Length = 125

 Score = 39.3 bits (90), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 29/124 (23%), Positives = 66/124 (53%), Gaps = 12/124 (9%)

Query: 351 MDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFND 407
           +D +++    +   FK+SP  G   + + +QV E+VK +   R + +Q+++   ++    
Sbjct: 3   LDFLEEAQLDRVGCFKFSPVEGAVATEIADQVPEDVKEDRFHRFMQVQQRISAARLQQK- 61

Query: 408 ACVGQIIEVLIEKHGKEK--GKLVGRSPWLQSVV----LNSKNHNIGDIIKVRITDVKIS 461
             VG+ + V++++  +E   G+ +  +P +  VV    +++++  +G II V IT+    
Sbjct: 62  --VGKTLAVIVDEIDEEGIIGRSMADAPEIDGVVYVDNISNQDVKVGQIISVTITNADEY 119

Query: 462 TLYG 465
            L+G
Sbjct: 120 DLWG 123


>gi|315174393|gb|EFU18410.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Enterococcus faecalis TX1346]
          Length = 382

 Score = 39.3 bits (90), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 7/64 (10%)

Query: 291 LHLPVQSGSDRILKSMNRRHTA---YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDF 347
           L + VQ+  DR+LK + R+HTA   YE  + +++         +S D I   PG+T + F
Sbjct: 117 LSMGVQTFDDRLLKKIGRKHTAADVYETMKFLEKENFTN----VSIDLIYALPGQTLESF 172

Query: 348 RATM 351
           R T+
Sbjct: 173 RDTL 176


>gi|94986835|ref|YP_594768.1| Fe-S oxidoreductase [Lawsonia intracellularis PHE/MN1-00]
 gi|94731084|emb|CAJ54447.1| predicted Fe-S oxidoreductase [Lawsonia intracellularis PHE/MN1-00]
          Length = 298

 Score = 39.3 bits (90), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 49/108 (45%), Gaps = 8/108 (7%)

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLH----LPVQSGSDRILKSMNRR 309
           L++IKGL  +   +   R   DCL      L V MPYL       VQS  D  L  + R 
Sbjct: 102 LAQIKGLQDVAGISVGTR--PDCLTNKKLSLIVEMPYLEKWVEFGVQSLHDETLIKIKRG 159

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
           H++    Q I  I++    + + +  + G PGET      T+D ++ +
Sbjct: 160 HSSKCSEQAI--IQAANAGLQVCAHVMFGLPGETPTHMLQTIDRLNSL 205


>gi|315169986|gb|EFU14003.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Enterococcus faecalis TX1342]
          Length = 382

 Score = 39.3 bits (90), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 7/64 (10%)

Query: 291 LHLPVQSGSDRILKSMNRRHTA---YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDF 347
           L + VQ+  DR+LK + R+HTA   YE  + +++         +S D I   PG+T + F
Sbjct: 117 LSMGVQTFDDRLLKKIGRKHTAEDVYETMKFLEKENFTN----VSIDLIYALPGQTLESF 172

Query: 348 RATM 351
           R T+
Sbjct: 173 RDTL 176


>gi|315145614|gb|EFT89630.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Enterococcus faecalis TX2141]
 gi|315160301|gb|EFU04318.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Enterococcus faecalis TX0645]
 gi|315166723|gb|EFU10740.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Enterococcus faecalis TX1341]
          Length = 382

 Score = 39.3 bits (90), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 7/64 (10%)

Query: 291 LHLPVQSGSDRILKSMNRRHTA---YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDF 347
           L + VQ+  DR+LK + R+HTA   YE  + +++         +S D I   PG+T + F
Sbjct: 117 LSMGVQTFDDRLLKKIGRKHTAADVYETMKFLEKENFTN----VSIDLIYALPGQTLESF 172

Query: 348 RATM 351
           R T+
Sbjct: 173 RDTL 176


>gi|227518567|ref|ZP_03948616.1| coproporphyrinogen dehydrogenase [Enterococcus faecalis TX0104]
 gi|227553094|ref|ZP_03983143.1| coproporphyrinogen dehydrogenase [Enterococcus faecalis HH22]
 gi|255976024|ref|ZP_05426610.1| coproporphyrinogen III oxidase [Enterococcus faecalis T2]
 gi|256958791|ref|ZP_05562962.1| coproporphyrinogen III oxidase [Enterococcus faecalis DS5]
 gi|257078822|ref|ZP_05573183.1| coproporphyrinogen III oxidase [Enterococcus faecalis JH1]
 gi|257419124|ref|ZP_05596118.1| coproporphyrinogen III oxidase [Enterococcus faecalis T11]
 gi|307271214|ref|ZP_07552497.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Enterococcus faecalis TX4248]
 gi|307279122|ref|ZP_07560180.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Enterococcus faecalis TX0860]
 gi|307291287|ref|ZP_07571171.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Enterococcus faecalis TX0411]
 gi|312899410|ref|ZP_07758741.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Enterococcus faecalis TX0470]
 gi|227073986|gb|EEI11949.1| coproporphyrinogen dehydrogenase [Enterococcus faecalis TX0104]
 gi|227177780|gb|EEI58752.1| coproporphyrinogen dehydrogenase [Enterococcus faecalis HH22]
 gi|255968896|gb|EET99518.1| coproporphyrinogen III oxidase [Enterococcus faecalis T2]
 gi|256949287|gb|EEU65919.1| coproporphyrinogen III oxidase [Enterococcus faecalis DS5]
 gi|256986852|gb|EEU74154.1| coproporphyrinogen III oxidase [Enterococcus faecalis JH1]
 gi|257160952|gb|EEU90912.1| coproporphyrinogen III oxidase [Enterococcus faecalis T11]
 gi|306497518|gb|EFM67051.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Enterococcus faecalis TX0411]
 gi|306504247|gb|EFM73459.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Enterococcus faecalis TX0860]
 gi|306512712|gb|EFM81361.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Enterococcus faecalis TX4248]
 gi|311293454|gb|EFQ72010.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Enterococcus faecalis TX0470]
 gi|315030964|gb|EFT42896.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Enterococcus faecalis TX4000]
 gi|315033700|gb|EFT45632.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Enterococcus faecalis TX0017]
 gi|315036785|gb|EFT48717.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Enterococcus faecalis TX0027]
 gi|315575638|gb|EFU87829.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Enterococcus faecalis TX0309B]
 gi|315579919|gb|EFU92110.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Enterococcus faecalis TX0309A]
          Length = 382

 Score = 39.3 bits (90), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 7/64 (10%)

Query: 291 LHLPVQSGSDRILKSMNRRHTA---YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDF 347
           L + VQ+  DR+LK + R+HTA   YE  + +++         +S D I   PG+T + F
Sbjct: 117 LSMGVQTFDDRLLKKIGRKHTAADVYETMKFLEKENFTN----VSIDLIYALPGQTLESF 172

Query: 348 RATM 351
           R T+
Sbjct: 173 RDTL 176


>gi|254489363|ref|ZP_05102566.1| radical SAM domain protein [Roseobacter sp. GAI101]
 gi|214041870|gb|EEB82510.1| radical SAM domain protein [Roseobacter sp. GAI101]
          Length = 466

 Score = 39.3 bits (90), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 47/101 (46%), Gaps = 7/101 (6%)

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD-- 352
            +SGS RIL +M RR  A   R++I  +++    I   +  +VG+ GET DD  AT+   
Sbjct: 305 AESGSQRILDAMERRTNAKRMREMITLLQN--HGIRAGTFIMVGYEGETFDDIAATVQHL 362

Query: 353 ---LVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER 390
              L D +    ++  K +P        ++ Q D     ER
Sbjct: 363 KAALPDDVLSTLSYPIKGTPYHDQVADRLVMQGDWATTTER 403


>gi|327534928|gb|AEA93762.1| coproporphyrinogen dehydrogenase [Enterococcus faecalis OG1RF]
          Length = 394

 Score = 39.3 bits (90), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 7/64 (10%)

Query: 291 LHLPVQSGSDRILKSMNRRHTA---YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDF 347
           L + VQ+  DR+LK + R+HTA   YE  + +++         +S D I   PG+T + F
Sbjct: 129 LSMGVQTFDDRLLKKIGRKHTAADVYETMKFLEKENFTN----VSIDLIYALPGQTLESF 184

Query: 348 RATM 351
           R T+
Sbjct: 185 RDTL 188


>gi|217974291|ref|YP_002359042.1| hypothetical protein Sbal223_3134 [Shewanella baltica OS223]
 gi|217499426|gb|ACK47619.1| conserved hypothetical protein [Shewanella baltica OS223]
          Length = 309

 Score = 39.3 bits (90), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 2/69 (2%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +L L +Q+  D  L+ +NR H    Y   + R R+    + + +  I+G P ET  D+ A
Sbjct: 147 WLELGLQTAQDETLRKINRGHDFACYCDTVSRARA--RGLKVCTHLILGLPDETHSDYMA 204

Query: 350 TMDLVDKIG 358
           T+  V + G
Sbjct: 205 TLAAVLQQG 213


>gi|229550209|ref|ZP_04438934.1| coproporphyrinogen dehydrogenase [Enterococcus faecalis ATCC 29200]
 gi|300859895|ref|ZP_07105983.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Enterococcus faecalis TUSoD Ef11]
 gi|307277568|ref|ZP_07558660.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Enterococcus faecalis TX2134]
 gi|312952302|ref|ZP_07771177.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Enterococcus faecalis TX0102]
 gi|229304647|gb|EEN70643.1| coproporphyrinogen dehydrogenase [Enterococcus faecalis ATCC 29200]
 gi|300850713|gb|EFK78462.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Enterococcus faecalis TUSoD Ef11]
 gi|306505833|gb|EFM75011.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Enterococcus faecalis TX2134]
 gi|310629686|gb|EFQ12969.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Enterococcus faecalis TX0102]
 gi|315147785|gb|EFT91801.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Enterococcus faecalis TX4244]
          Length = 394

 Score = 39.3 bits (90), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 7/64 (10%)

Query: 291 LHLPVQSGSDRILKSMNRRHTA---YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDF 347
           L + VQ+  DR+LK + R+HTA   YE  + +++         +S D I   PG+T + F
Sbjct: 129 LSMGVQTFDDRLLKKIGRKHTAADVYETMKFLEKENFTN----VSIDLIYALPGQTLESF 184

Query: 348 RATM 351
           R T+
Sbjct: 185 RDTL 188


>gi|331698269|ref|YP_004334508.1| oxygen-independent coproporphyrinogen III oxidase [Pseudonocardia
           dioxanivorans CB1190]
 gi|326952958|gb|AEA26655.1| oxygen-independent coproporphyrinogen III oxidase [Pseudonocardia
           dioxanivorans CB1190]
          Length = 406

 Score = 39.3 bits (90), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 60/146 (41%), Gaps = 10/146 (6%)

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
           T S+P   S       G +D     + L +QS +  +L  ++RRHT           R+ 
Sbjct: 122 TESNPESTSPEFFA--GLVDAGYTRVSLGMQSAASHVLAVLDRRHTPGRAVAAAREARAA 179

Query: 326 RPDIA-ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-----NML 379
              I  ++ D I   PGETDDD RA++D V   G     ++      GT  +       L
Sbjct: 180 --GIGHVNLDLIYATPGETDDDLRASLDAVLSAGVDHVSAYSLIVEDGTALARRVRRGEL 237

Query: 380 EQVDENVKAERLLCLQKKLREQQVSF 405
              D++V A R   L   L E  + +
Sbjct: 238 PAPDDDVAAARYEILDDALSEAGLRW 263


>gi|295112842|emb|CBL31479.1| coproporphyrinogen III oxidase, anaerobic [Enterococcus sp. 7L76]
          Length = 394

 Score = 39.3 bits (90), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 7/64 (10%)

Query: 291 LHLPVQSGSDRILKSMNRRHTA---YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDF 347
           L + VQ+  DR+LK + R+HTA   YE  + +++         +S D I   PG+T + F
Sbjct: 129 LSMGVQTFDDRLLKKIGRKHTAADVYETMKFLEKENFTN----VSIDLIYALPGQTLESF 184

Query: 348 RATM 351
           R T+
Sbjct: 185 RDTL 188


>gi|257085436|ref|ZP_05579797.1| coproporphyrinogen III oxidase [Enterococcus faecalis Fly1]
 gi|256993466|gb|EEU80768.1| coproporphyrinogen III oxidase [Enterococcus faecalis Fly1]
          Length = 382

 Score = 39.3 bits (90), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 7/64 (10%)

Query: 291 LHLPVQSGSDRILKSMNRRHTA---YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDF 347
           L + VQ+  DR+LK + R+HTA   YE  + +++         +S D I   PG+T + F
Sbjct: 117 LSMGVQTFDDRLLKKIGRKHTAADVYETMKFLEKENFTN----VSIDLIYALPGQTLESF 172

Query: 348 RATM 351
           R T+
Sbjct: 173 RDTL 176


>gi|257082735|ref|ZP_05577096.1| coproporphyrinogen III oxidase [Enterococcus faecalis E1Sol]
 gi|256990765|gb|EEU78067.1| coproporphyrinogen III oxidase [Enterococcus faecalis E1Sol]
          Length = 382

 Score = 39.3 bits (90), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 7/64 (10%)

Query: 291 LHLPVQSGSDRILKSMNRRHTA---YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDF 347
           L + VQ+  DR+LK + R+HTA   YE  + +++         +S D I   PG+T + F
Sbjct: 117 LSMGVQTFDDRLLKKIGRKHTAADVYETMKFLEKENFTN----VSIDLIYALPGQTLESF 172

Query: 348 RATM 351
           R T+
Sbjct: 173 RDTL 176


>gi|29375873|ref|NP_815027.1| coproporphyrinogen III oxidase [Enterococcus faecalis V583]
 gi|229546018|ref|ZP_04434743.1| coproporphyrinogen dehydrogenase [Enterococcus faecalis TX1322]
 gi|256852946|ref|ZP_05558316.1| coproporphyrinogen III oxidase [Enterococcus faecalis T8]
 gi|294781172|ref|ZP_06746521.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Enterococcus faecalis PC1.1]
 gi|29343335|gb|AAO81097.1| oxygen-independent coproporphyrinogen III oxidase, putative
           [Enterococcus faecalis V583]
 gi|229308861|gb|EEN74848.1| coproporphyrinogen dehydrogenase [Enterococcus faecalis TX1322]
 gi|256711405|gb|EEU26443.1| coproporphyrinogen III oxidase [Enterococcus faecalis T8]
 gi|294451739|gb|EFG20192.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Enterococcus faecalis PC1.1]
          Length = 394

 Score = 39.3 bits (90), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 7/64 (10%)

Query: 291 LHLPVQSGSDRILKSMNRRHTA---YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDF 347
           L + VQ+  DR+LK + R+HTA   YE  + +++         +S D I   PG+T + F
Sbjct: 129 LSMGVQTFDDRLLKKIGRKHTAADVYETMKFLEKENFTN----VSIDLIYALPGQTLESF 184

Query: 348 RATM 351
           R T+
Sbjct: 185 RDTL 188


>gi|326798467|ref|YP_004316286.1| oxygen-independent coproporphyrinogen III oxidase [Sphingobacterium
           sp. 21]
 gi|326549231|gb|ADZ77616.1| oxygen-independent coproporphyrinogen III oxidase [Sphingobacterium
           sp. 21]
          Length = 383

 Score = 39.3 bits (90), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 40/78 (51%), Gaps = 3/78 (3%)

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD-L 353
           +QS  D  LK MNR HTA E    I R++    D  I++D I G+P  TD+ +   +  L
Sbjct: 118 IQSFYDEDLKWMNRAHTAQEADSAIKRVQDAGFD-DITADLIYGYPLLTDEKWLNNIQKL 176

Query: 354 VD-KIGYAQAFSFKYSPR 370
           V   I +  A+S    P+
Sbjct: 177 VQLHIPHISAYSLTVEPK 194


>gi|256618883|ref|ZP_05475729.1| coproporphyrinogen III oxidase [Enterococcus faecalis ATCC 4200]
 gi|256598410|gb|EEU17586.1| coproporphyrinogen III oxidase [Enterococcus faecalis ATCC 4200]
          Length = 382

 Score = 39.3 bits (90), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 7/64 (10%)

Query: 291 LHLPVQSGSDRILKSMNRRHTA---YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDF 347
           L + VQ+  DR+LK + R+HTA   YE  + +++         +S D I   PG+T + F
Sbjct: 117 LSMGVQTFDDRLLKKIGRKHTAADVYETMKFLEKENFTN----VSIDLIYALPGQTLESF 172

Query: 348 RATM 351
           R T+
Sbjct: 173 RDTL 176


>gi|218263263|ref|ZP_03477439.1| hypothetical protein PRABACTJOHN_03123 [Parabacteroides johnsonii
           DSM 18315]
 gi|218222837|gb|EEC95487.1| hypothetical protein PRABACTJOHN_03123 [Parabacteroides johnsonii
           DSM 18315]
          Length = 455

 Score = 39.3 bits (90), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 30/114 (26%), Positives = 58/114 (50%), Gaps = 14/114 (12%)

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
           L + VQ  +  +L+ +NR+ +      +++ +RS+  D+ ++ DF+ G P +T++ F  T
Sbjct: 164 LSIGVQDFNKEVLRGVNRQSSRIPMEDVMEILRSL--DVRVNMDFLYGLPFQTEESFAQT 221

Query: 351 MD--LVDKIGYAQAFSFKYSPRLGTPGSNMLEQV-----DENVK----AERLLC 393
           ++  +  K      FS+ + P    P   +LE+V     DE  +    A R+LC
Sbjct: 222 IERAVAMKPDRLVTFSYAHVP-WAFPRQQILEKVGLPSGDEKSRMFETAHRILC 274


>gi|255972986|ref|ZP_05423572.1| coproporphyrinogen III oxidase [Enterococcus faecalis T1]
 gi|256762300|ref|ZP_05502880.1| coproporphyrinogen III oxidase [Enterococcus faecalis T3]
 gi|256965300|ref|ZP_05569471.1| coproporphyrinogen III oxidase [Enterococcus faecalis HIP11704]
 gi|257086650|ref|ZP_05581011.1| coproporphyrinogen III oxidase [Enterococcus faecalis D6]
 gi|257415922|ref|ZP_05592916.1| coproporphyrinogen III oxidase [Enterococcus faecalis AR01/DG]
 gi|257422809|ref|ZP_05599799.1| coproporphyrinogen III oxidase [Enterococcus faecalis X98]
 gi|307273405|ref|ZP_07554650.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Enterococcus faecalis TX0855]
 gi|255964004|gb|EET96480.1| coproporphyrinogen III oxidase [Enterococcus faecalis T1]
 gi|256683551|gb|EEU23246.1| coproporphyrinogen III oxidase [Enterococcus faecalis T3]
 gi|256955796|gb|EEU72428.1| coproporphyrinogen III oxidase [Enterococcus faecalis HIP11704]
 gi|256994680|gb|EEU81982.1| coproporphyrinogen III oxidase [Enterococcus faecalis D6]
 gi|257157750|gb|EEU87710.1| coproporphyrinogen III oxidase [Enterococcus faecalis ARO1/DG]
 gi|257164633|gb|EEU94593.1| coproporphyrinogen III oxidase [Enterococcus faecalis X98]
 gi|306509932|gb|EFM78957.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Enterococcus faecalis TX0855]
 gi|315027456|gb|EFT39388.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Enterococcus faecalis TX2137]
 gi|315150712|gb|EFT94728.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Enterococcus faecalis TX0012]
 gi|315153265|gb|EFT97281.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Enterococcus faecalis TX0031]
 gi|315155957|gb|EFT99973.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Enterococcus faecalis TX0043]
 gi|315157875|gb|EFU01892.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Enterococcus faecalis TX0312]
          Length = 382

 Score = 39.3 bits (90), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 7/64 (10%)

Query: 291 LHLPVQSGSDRILKSMNRRHTA---YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDF 347
           L + VQ+  DR+LK + R+HTA   YE  + +++         +S D I   PG+T + F
Sbjct: 117 LSMGVQTFDDRLLKKIGRKHTAADVYETMKFLEKENFTN----VSIDLIYALPGQTLESF 172

Query: 348 RATM 351
           R T+
Sbjct: 173 RDTL 176


>gi|167527175|ref|XP_001747920.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163773669|gb|EDQ87307.1| predicted protein [Monosiga brevicollis MX1]
          Length = 463

 Score = 39.3 bits (90), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 61/118 (51%), Gaps = 17/118 (14%)

Query: 251 LYSLSEIKGLVRLRYT----TSHPRDMSDCLIKAHGD---LDVLMPY-------LHLPVQ 296
           L S S ++ LV L YT    +SHP +++   ++A+ D    D L  +       L + VQ
Sbjct: 88  LMSPSLLRRLVDLVYTMFPPSSHPVEIT---LEANPDNITRDTLARWQTAGINRLSIGVQ 144

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           +  D +L+++ R+H+A    +++ + + V     +S D + G PG+  DD+   +D V
Sbjct: 145 AIRDPLLQALGRQHSAEVALRVVKQAQDVFGSTGVSLDLMFGLPGQALDDWCTDLDHV 202


>gi|119896562|ref|YP_931775.1| hypothetical protein azo0271 [Azoarcus sp. BH72]
 gi|119668975|emb|CAL92888.1| conserved hypothetical protein [Azoarcus sp. BH72]
          Length = 528

 Score = 39.3 bits (90), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 57/239 (23%), Positives = 90/239 (37%), Gaps = 31/239 (12%)

Query: 148 RVVDTDYSVEDKFERLSIVDGGYN-------RKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           R++D D      +E+L+    GY+       ++ G T  +    GC   C+FC       
Sbjct: 155 RILDLDELPFPAYEKLAGFPHGYHLPLFSYEKRWGAT--MITSRGCPYTCSFCDRTVYER 212

Query: 201 IEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           +    S   V D  R L D  GV  I +      A + +    E C    L+     +  
Sbjct: 213 LYKYNSAQYVHDHIRHLRDTFGVHHINIYDDLFTAHKKR--IHELCEL--LIAKPLGVDF 268

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH----TAYEY 315
              +R  T H  D    L+K  G L V M         G +     M  RH    T    
Sbjct: 269 NCAIR--TGHTSDEMLALLKRAGALMVSM---------GIESADPGMMERHKTGVTLEAV 317

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
           ++ +++I +    +     FI G PGET +  + T D + ++   +    K+SP  G P
Sbjct: 318 KKTVEQIHTA--GLRAKGLFIFGLPGETPETLKKTSDFILELDLDEMNMTKFSPMYGAP 374


>gi|307288258|ref|ZP_07568256.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Enterococcus faecalis TX0109]
 gi|306500774|gb|EFM70094.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Enterococcus faecalis TX0109]
 gi|315164176|gb|EFU08193.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Enterococcus faecalis TX1302]
          Length = 382

 Score = 39.3 bits (90), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 7/64 (10%)

Query: 291 LHLPVQSGSDRILKSMNRRHTA---YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDF 347
           L + VQ+  DR+LK + R+HTA   YE  + +++         +S D I   PG+T + F
Sbjct: 117 LSMGVQTFDDRLLKKIGRKHTAADVYETMKFLEKENFTN----VSIDLIYALPGQTLESF 172

Query: 348 RATM 351
           R T+
Sbjct: 173 RDTL 176


>gi|317486580|ref|ZP_07945401.1| TIGR01212 family radical SAM protein [Bilophila wadsworthia 3_1_6]
 gi|316922180|gb|EFV43445.1| TIGR01212 family radical SAM protein [Bilophila wadsworthia 3_1_6]
          Length = 312

 Score = 39.3 bits (90), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 20/68 (29%), Positives = 37/68 (54%), Gaps = 2/68 (2%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +L L VQ+ +D  L+ +NR H A    + I+       ++ + +  ++G PGET DD  A
Sbjct: 156 WLELGVQTLNDATLRRINRGHDAAASAKAIELAEKT--NVQVCAHLMLGLPGETPDDVHA 213

Query: 350 TMDLVDKI 357
           T+  ++ +
Sbjct: 214 TVRRLNAL 221


>gi|88801304|ref|ZP_01116832.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Polaribacter irgensii 23-P]
 gi|88781962|gb|EAR13139.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Polaribacter irgensii 23-P]
          Length = 376

 Score = 39.3 bits (90), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 69/163 (42%), Gaps = 21/163 (12%)

Query: 253 SLSEIKGLVRLRYTT------------SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300
           S  EI+GL+   Y              ++P D+S+  + A     +    L + VQS  +
Sbjct: 66  STEEIRGLIAAVYLNFEVIENPEITLEANPDDLSEEKLIALSKSPI--NRLSIGVQSFFE 123

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
           + LK MNR H A E ++ +    + R    IS D I G PG T++++R  +      G  
Sbjct: 124 KDLKLMNRAHNAAEAKKSL--ALATRYFDNISLDLIYGIPGCTNEEWRTNIKTALSFGIP 181

Query: 361 QAFSFKYSPRLGTPGSNMLEQ-----VDENVKAERLLCLQKKL 398
              S+       T    M+E+     VD+    ++   L K+L
Sbjct: 182 HISSYALVVEPYTALKTMIEKGKIKNVDDTKTQQQFQILTKEL 224


>gi|256962102|ref|ZP_05566273.1| coproporphyrinogen III oxidase [Enterococcus faecalis Merz96]
 gi|293383126|ref|ZP_06629043.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Enterococcus faecalis R712]
 gi|293387721|ref|ZP_06632266.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Enterococcus faecalis S613]
 gi|312907286|ref|ZP_07766277.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Enterococcus faecalis DAPTO 512]
 gi|312909904|ref|ZP_07768752.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Enterococcus faecalis DAPTO 516]
 gi|256952598|gb|EEU69230.1| coproporphyrinogen III oxidase [Enterococcus faecalis Merz96]
 gi|291079465|gb|EFE16829.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Enterococcus faecalis R712]
 gi|291082910|gb|EFE19873.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Enterococcus faecalis S613]
 gi|310626314|gb|EFQ09597.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Enterococcus faecalis DAPTO 512]
 gi|311289862|gb|EFQ68418.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Enterococcus faecalis DAPTO 516]
          Length = 382

 Score = 39.3 bits (90), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 7/64 (10%)

Query: 291 LHLPVQSGSDRILKSMNRRHTA---YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDF 347
           L + VQ+  DR+LK + R+HTA   YE  + +++         +S D I   PG+T + F
Sbjct: 117 LSMGVQTFDDRLLKKIGRKHTAADVYETMKFLEKENFTN----VSIDLIYALPGQTLESF 172

Query: 348 RATM 351
           R T+
Sbjct: 173 RDTL 176


>gi|319790666|ref|YP_004152299.1| oxygen-independent coproporphyrinogen III oxidase [Thermovibrio
           ammonificans HB-1]
 gi|317115168|gb|ADU97658.1| oxygen-independent coproporphyrinogen III oxidase [Thermovibrio
           ammonificans HB-1]
          Length = 376

 Score = 39.3 bits (90), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 44/79 (55%), Gaps = 4/79 (5%)

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
           +P D +   ++A  +L V    + + VQS SD  LK++ RRHTA +  + ++    V  +
Sbjct: 89  NPEDATPQKLRALRELGVNR--VSIGVQSLSDTTLKALRRRHTARQGLKAVEEALKVFNN 146

Query: 329 IAISSDFIVGFPGETDDDF 347
           +++  D I G PG+  ++F
Sbjct: 147 VSV--DLIYGVPGQRPEEF 163


>gi|307151102|ref|YP_003886486.1| Radical SAM domain-containing protein [Cyanothece sp. PCC 7822]
 gi|306981330|gb|ADN13211.1| Radical SAM domain protein [Cyanothece sp. PCC 7822]
          Length = 534

 Score = 39.3 bits (90), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 60/248 (24%), Positives = 103/248 (41%), Gaps = 31/248 (12%)

Query: 185 GCDKFCTFCVVPYT----RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL 240
            C + C FC+  Y     R   +  SL   +++  K+ D     + LLG +V        
Sbjct: 230 SCPEMCRFCLASYLTLPFRTASLESSLIPAIEKGLKVTDR----LGLLGASVT------- 278

Query: 241 DGEKCTFSDLLYSLSEIK-GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
             +   F  LL  L++ +   +RL   +     +++ L       D     + + V+SGS
Sbjct: 279 --QHPEFEALLDYLNQPQYDPIRLSIASVRTNTVTEKLASTLAKKDTRS--ITIAVESGS 334

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDF--IVGFPGETDDDFRATMD-LVDK 356
           ++I K +N++ +  E   II    + +        F  +VG PGE D D   T+  L+D 
Sbjct: 335 EKIRKMINKKLSNSE---IIQAAVNAKAGGLKGIKFYGMVGLPGEEDTDVEETVKMLLDV 391

Query: 357 IGYAQAFSFKYSPRLGTPGSNMLEQ---VDENVKAERLLCLQKKLREQQVSFN-DACVGQ 412
              A             P S+   Q   V+   K +RL  L+K+LR Q + F  ++    
Sbjct: 392 KKTAPGLRLTLGCSTFVPKSHTPFQWFGVNREAK-KRLKGLEKQLRSQGIEFRPESYNWS 450

Query: 413 IIEVLIEK 420
           +I+ LI +
Sbjct: 451 VIQALISR 458


>gi|291436223|ref|ZP_06575613.1| radical SAM domain-containing protein [Streptomyces ghanaensis ATCC
           14672]
 gi|291339118|gb|EFE66074.1| radical SAM domain-containing protein [Streptomyces ghanaensis ATCC
           14672]
          Length = 470

 Score = 39.3 bits (90), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 58/215 (26%), Positives = 79/215 (36%), Gaps = 48/215 (22%)

Query: 178 AFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWR 236
           A +    GC   C+FC         + RS   VV E  +L +  GV EI          R
Sbjct: 199 ATMISSRGCPFKCSFCFKQAVDKKSMYRSPEDVVGEMTELKERWGVKEIMFYDDVFTLHR 258

Query: 237 GK-----GLDGE--------KCTFSDL----LYSLSEIKGLVRLRYTTSHPRDMSDCLIK 279
           G+     GL GE          T  DL    L       G VRLR+   H          
Sbjct: 259 GRVREICGLIGETGLKVRWEAPTRVDLVPEPLLEAMAGAGCVRLRFGIEH---------- 308

Query: 280 AHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGF 339
             GD ++L     +  +S   +I K++   H A                I     FIVG+
Sbjct: 309 --GDSEILE---RMRKESDIQKIEKAVTSAHEA---------------GIKGFGYFIVGW 348

Query: 340 PGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
            GET + FR T+DL  ++    A  +  +P  GTP
Sbjct: 349 LGETREQFRRTVDLACRLPLDYASFYTATPLPGTP 383


>gi|262066478|ref|ZP_06026090.1| radical SAM protein [Fusobacterium periodonticum ATCC 33693]
 gi|291379810|gb|EFE87328.1| radical SAM protein [Fusobacterium periodonticum ATCC 33693]
          Length = 434

 Score = 39.3 bits (90), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 40/207 (19%), Positives = 93/207 (44%), Gaps = 31/207 (14%)

Query: 185 GCDKFCTFCVV-PYTRGIEISRSLSQVVDEARKLIDNG--VCEITLLGQNVNAWRGKGLD 241
           GC   C FC +    RG    R +  V++E +++         I  +  N+ A + K L 
Sbjct: 163 GCMHQCEFCTIGSVHRGDYAHRRVELVIEEIKEIFKTNKRAKVIYFVDDNIFANKKKAL- 221

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSD-----CLIKAHGDLDVLMPYLHLPVQ 296
                     +  +E+K L ++++      D++       L+   G +++L+ + ++ + 
Sbjct: 222 ----------HLFNELKKL-KIKWACQGSIDIAKDEELVKLMSESGCIEMLLGFENINIM 270

Query: 297 SGSDRILKSMNRRHTA-YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
           +     +K MN++    ++Y  II   +  +  I + + +++G+  +T D F+  +D  +
Sbjct: 271 N-----IKKMNKKSNYDFDYENIIRIFKKYK--ILVHASYVIGYDYDTKDYFQEILDFSN 323

Query: 356 KIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           K    + F   ++P L  PG+   +++
Sbjct: 324 K---HKFFLAGFNPALPIPGTPFYDRL 347


>gi|306836636|ref|ZP_07469602.1| coproporphyrinogen dehydrogenase [Corynebacterium accolens ATCC
           49726]
 gi|304567466|gb|EFM43065.1| coproporphyrinogen dehydrogenase [Corynebacterium accolens ATCC
           49726]
          Length = 379

 Score = 39.3 bits (90), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 58/147 (39%), Gaps = 12/147 (8%)

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
           T S+P   S     A  D       + L +QS S  +L+ + R HT     +  D  R  
Sbjct: 99  TESNPESTSPEYFAALADAG--FNRISLGMQSASHSVLQVLERAHTP---GRAFDAAREA 153

Query: 326 RPD--IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP-----GSNM 378
           R      ++ D I G P ETDD+ R T+D V + G     ++      GT         +
Sbjct: 154 REAGFQHVNLDMIYGTPTETDDNVRETLDRVLETGVDHVSAYSLIVEDGTRMARKVNKGL 213

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSF 405
           L   DE+V A R   +   L E    +
Sbjct: 214 LPAPDEDVLARRYEMISSTLEEAGFEW 240


>gi|260911686|ref|ZP_05918265.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str.
           F0295]
 gi|260634183|gb|EEX52294.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str.
           F0295]
          Length = 343

 Score = 39.3 bits (90), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 32/91 (35%), Positives = 45/91 (49%), Gaps = 9/91 (9%)

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDD----DFRAT 350
           VQ+ SD  L  + RRH A +    I R+R V     IS D I GFP +T +    D +  
Sbjct: 90  VQTFSDERLNFLRRRHKAADIEPAIQRLRQVGIG-NISIDLIFGFPKQTVNEWATDLQKA 148

Query: 351 MDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           ++L   + +  A+S  Y    GTP   +LEQ
Sbjct: 149 IEL--DVEHISAYSLMYEE--GTPLFRLLEQ 175


>gi|167749835|ref|ZP_02421962.1| hypothetical protein EUBSIR_00803 [Eubacterium siraeum DSM 15702]
 gi|167657147|gb|EDS01277.1| hypothetical protein EUBSIR_00803 [Eubacterium siraeum DSM 15702]
          Length = 480

 Score = 39.3 bits (90), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 1/63 (1%)

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
           QS +D +L+++ RRHT  +  +  D  R V  D  I+SD I G P ET+  F  ++  + 
Sbjct: 280 QSMNDSVLEAVGRRHTVKQVCEAFDIARKVGFD-CINSDIIAGLPAETERSFEDSLQQLC 338

Query: 356 KIG 358
           K+ 
Sbjct: 339 KLS 341


>gi|320096044|ref|ZP_08027647.1| coproporphyrinogen dehydrogenase [Actinomyces sp. oral taxon 178
           str. F0338]
 gi|319977023|gb|EFW08763.1| coproporphyrinogen dehydrogenase [Actinomyces sp. oral taxon 178
           str. F0338]
          Length = 407

 Score = 39.3 bits (90), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 2/57 (3%)

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351
           +QS   R+L +++R H      + +   R    D+++  D I G PGET DD+RA++
Sbjct: 153 MQSAVPRVLAALDRTHAPERVPEAVAWAREAGLDVSV--DLIYGCPGETLDDWRASL 207


>gi|34499336|ref|NP_903551.1| hypothetical protein CV_3881 [Chromobacterium violaceum ATCC 12472]
 gi|34332892|gb|AAQ61543.2| conserved hypothetical protein [Chromobacterium violaceum ATCC
           12472]
          Length = 558

 Score = 39.3 bits (90), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 51/208 (24%), Positives = 86/208 (41%), Gaps = 34/208 (16%)

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS-RSLSQ 209
           D D    DK E   +V   +N  +     +    GC   CTFC    T G  +   SL +
Sbjct: 186 DYDLCDIDKHEINQVVASYHNLDKTRGFHVMTSRGCPFLCTFCASHRTHGRSMRYHSLER 245

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR----- 264
           V ++  +L+           +  NA      D      SD +Y + +I   ++L      
Sbjct: 246 VREDFTRLV-----------EKYNAATVIFQDDHLMADSDRVYKILDIVKSLKLHSVYQN 294

Query: 265 ----YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
               Y    P      +++A  D  V   +L LPV+SGS+++LK   R+       +I +
Sbjct: 295 GLTLYALDRP------MLEAFWDAGVR--HLVLPVESGSEKVLKKQMRKPLK---MKISE 343

Query: 321 RIRSVRPDIAI--SSDFIVGFPGETDDD 346
           R+     ++ I  +++ ++G PGET  D
Sbjct: 344 RVAKDCRELGIYTNTNILIGMPGETKAD 371


>gi|153869266|ref|ZP_01998915.1| Magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative
           cyclase [Beggiatoa sp. PS]
 gi|152074191|gb|EDN71072.1| Magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative
           cyclase [Beggiatoa sp. PS]
          Length = 470

 Score = 39.3 bits (90), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 58/255 (22%), Positives = 101/255 (39%), Gaps = 37/255 (14%)

Query: 168 GGYNRKR---GVTAFLTIQEGCDKFCTFCVVPYTRGIEIS-RSLSQVVDEARKLIDN-GV 222
           G  N K+    + A +     C   C FC      G      S  +VVDE  +L    GV
Sbjct: 193 GWLNPKKHQIDIVAPILTSRSCPFDCNFCAFNTLMGRGFRYHSPKRVVDEIERLHKQFGV 252

Query: 223 CEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAH 281
                +  N+   + + ++   +    +L    + + GL    +  +  +D+ D L  A 
Sbjct: 253 NYFEFIDDNIGIKKARLIEICNEILKRNLDIQFTSMSGL----HIATLDQDIIDALCDAG 308

Query: 282 GDLDVLMPYLH--LPVQSGSDRIL-KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVG 338
                   YLH  LPV+  SD I  K + ++ +  +  ++ D  +  +  +     FI+G
Sbjct: 309 --------YLHAILPVEHASDFIRNKVIGKKLSRDKIFEVADLFK--KRGVMTRGFFIIG 358

Query: 339 FPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKL 398
           FP ETD   R T+ ++ ++       F   P    PG+ + +Q           CL+ KL
Sbjct: 359 FPEETDKTIRETIKMIKELDLDLVNVFNLIP---FPGTRLFQQ-----------CLEHKL 404

Query: 399 REQQVSFNDACVGQI 413
              +V  N    G++
Sbjct: 405 FLNKVDTNTLWKGEL 419


>gi|310829111|ref|YP_003961468.1| hypothetical protein ELI_3546 [Eubacterium limosum KIST612]
 gi|308740845|gb|ADO38505.1| hypothetical protein ELI_3546 [Eubacterium limosum KIST612]
          Length = 379

 Score = 39.3 bits (90), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 23/85 (27%), Positives = 47/85 (55%), Gaps = 3/85 (3%)

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
           ++P  ++D   +A+  +   +  + + +Q+ SDR LK++ R HT  ++   +D +     
Sbjct: 98  ANPGTLTDAKCRAYRSMG--LNRVSMGLQTTSDRGLKALGRIHTCADFVASLDLLVGAGF 155

Query: 328 DIAISSDFIVGFPGETDDDFRATMD 352
           +  IS+D + G PG+T +D R  +D
Sbjct: 156 E-NISADLMFGLPGQTLEDVRQDID 179


>gi|53715153|ref|YP_101145.1| coproporphyrinogen III oxidase [Bacteroides fragilis YCH46]
 gi|52218018|dbj|BAD50611.1| coproporphyrinogen III oxidase [Bacteroides fragilis YCH46]
          Length = 377

 Score = 38.9 bits (89), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 38/124 (30%), Positives = 56/124 (45%), Gaps = 16/124 (12%)

Query: 288 MPY--LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDD 345
           +P+  + + +Q+  D  LK + RRH A +  + ++  R+      IS D I G PGET +
Sbjct: 109 LPFNRISMGIQTFDDTTLKLLKRRHNAAQAIRAVELCRA-HGFRNISIDLIYGLPGETTE 167

Query: 346 DFRATMDLVDKIG----YAQAFSFKYSPRLGTPGSNML-----EQVDENVKAERLLCLQK 396
             R   DL   I     +  A+   Y    GTP   ML     E+VDE+        L  
Sbjct: 168 --RWEKDLQQAIALDVEHISAYHLIYEE--GTPIYKMLQKHQVEEVDEDSSVRFFTLLID 223

Query: 397 KLRE 400
           +LRE
Sbjct: 224 RLRE 227


>gi|301164603|emb|CBW24162.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Bacteroides fragilis 638R]
          Length = 377

 Score = 38.9 bits (89), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 38/124 (30%), Positives = 56/124 (45%), Gaps = 16/124 (12%)

Query: 288 MPY--LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDD 345
           +P+  + + +Q+  D  LK + RRH A +  + ++  R+      IS D I G PGET +
Sbjct: 109 LPFNRISMGIQTFDDTTLKLLKRRHNAAQAIRAVELCRA-HGFRNISIDLIYGLPGETTE 167

Query: 346 DFRATMDLVDKIG----YAQAFSFKYSPRLGTPGSNML-----EQVDENVKAERLLCLQK 396
             R   DL   I     +  A+   Y    GTP   ML     E+VDE+        L  
Sbjct: 168 --RWEKDLQQAIALDVEHISAYHLIYEE--GTPIYKMLQKHQVEEVDEDSSVRFFTLLID 223

Query: 397 KLRE 400
           +LRE
Sbjct: 224 RLRE 227


>gi|299140850|ref|ZP_07033988.1| oxygen-independent coproporphyrinogen III oxidase [Prevotella oris
           C735]
 gi|298577816|gb|EFI49684.1| oxygen-independent coproporphyrinogen III oxidase [Prevotella oris
           C735]
          Length = 384

 Score = 38.9 bits (89), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 30/114 (26%), Positives = 56/114 (49%), Gaps = 7/114 (6%)

Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329
           P DM++        L+V    + +  Q+ ++  L+ ++RRH   E  Q ++ +R V    
Sbjct: 102 PDDMTEAFAARLATLNV--NRVSMGAQTFNNNRLRFLHRRHNREEIMQAVNYLRHVGIK- 158

Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIG--YAQAFSFKYSPRLGTPGSNMLEQ 381
            IS D + GFP ET ++++  +    K+   +  A+S  Y    GTP  +M ++
Sbjct: 159 NISIDLMFGFPEETMEEWQTDLQEAIKLNVEHISAYSLMYEE--GTPLFHMKQE 210


>gi|188589895|ref|YP_001921976.1| radical SAM domain protein [Clostridium botulinum E3 str. Alaska
           E43]
 gi|188500176|gb|ACD53312.1| putative cobalamin-dependent enzyme [Clostridium botulinum E3 str.
           Alaska E43]
          Length = 554

 Score = 38.9 bits (89), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 40/178 (22%), Positives = 77/178 (43%), Gaps = 21/178 (11%)

Query: 185 GCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK 244
           GC   C +C+   + G+    S+ +V+ E +  ID  V  +  + +  N           
Sbjct: 182 GCPFNCKYCLSSTSHGVRF-LSIERVLKELQYFIDKKVRLVKFVDRTFN----------- 229

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMS-DCLIKAHGDLDVLMP----YLHLPVQSGS 299
           C      +S++  K L+     T    ++S D L +    L    P       + VQ+ +
Sbjct: 230 CNHK---FSMAIWKFLIESNTETKFHFEISADILKEEEIKLLSKAPKGRFQFEVGVQTTN 286

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
           D++L ++NR     + ++ +D + +++ +I    D I G PGE  + F  + + V KI
Sbjct: 287 DKVLNNINRFVNFEDIKEKVDELMAIK-NIQQHLDLIAGLPGENYESFVNSFNDVYKI 343


>gi|282880323|ref|ZP_06289037.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Prevotella timonensis CRIS 5C-B1]
 gi|281305825|gb|EFA97871.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Prevotella timonensis CRIS 5C-B1]
          Length = 386

 Score = 38.9 bits (89), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 55/114 (48%), Gaps = 14/114 (12%)

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGET----DDDFRAT 350
           VQ+ S+  L  ++RRH A +    ++R+R +  D  IS D + GFP ++    + D    
Sbjct: 133 VQTFSNAQLNFLHRRHQAEDVATAVNRLREIGVD-NISIDLMFGFPNQSLAAWERDILQV 191

Query: 351 MDLVDKIGYAQAFSFKYSPRLGTP-----GSNMLEQVDENVKAERLLCLQKKLR 399
           +DL   + +  A+S  Y    GTP      SN + ++D+ +  +    L   L+
Sbjct: 192 LDL--GVEHISAYSLMYEE--GTPLNQLLKSNKIHEIDDELSLQMYQALVHHLK 241


>gi|60683089|ref|YP_213233.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Bacteroides fragilis NCTC 9343]
 gi|60494523|emb|CAH09320.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Bacteroides fragilis NCTC 9343]
          Length = 377

 Score = 38.9 bits (89), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 38/124 (30%), Positives = 56/124 (45%), Gaps = 16/124 (12%)

Query: 288 MPY--LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDD 345
           +P+  + + +Q+  D  LK + RRH A +  + ++  R+      IS D I G PGET +
Sbjct: 109 LPFNRISMGIQTFDDTTLKLLKRRHNAAQAIRAVELCRA-HGFRNISIDLIYGLPGETTE 167

Query: 346 DFRATMDLVDKIG----YAQAFSFKYSPRLGTPGSNML-----EQVDENVKAERLLCLQK 396
             R   DL   I     +  A+   Y    GTP   ML     E+VDE+        L  
Sbjct: 168 --RWEKDLQQAIALDVEHISAYHLIYEE--GTPIYKMLQKHQVEEVDEDSSVRFFTLLID 223

Query: 397 KLRE 400
           +LRE
Sbjct: 224 RLRE 227


>gi|218782584|ref|YP_002433902.1| radical SAM domain protein [Desulfatibacillum alkenivorans AK-01]
 gi|218763968|gb|ACL06434.1| Radical SAM domain protein [Desulfatibacillum alkenivorans AK-01]
          Length = 460

 Score = 38.9 bits (89), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 51/196 (26%), Positives = 91/196 (46%), Gaps = 25/196 (12%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLID-NGVCEITLLGQ--NVNAWRGKGLDG 242
           C   C +C   + +G    RS   V DE   L+  +GV EI ++    N+NA R + +  
Sbjct: 206 CPYQCIYCHRIFGKGFR-PRSPENVADEIEALVRRHGVREIEIVDDIFNLNAERAEAI-- 262

Query: 243 EKCTFSDLLYSLSEIKGL-VRLRYTTSHPRDMSDC-LIKAHGDLDVLMPYLHLPVQSGSD 300
                 DL+ S    +GL +++ +  +   D+ +  L+K      V   +  + V++GS 
Sbjct: 263 -----CDLIIS----RGLKIKISFPNAMRADLLNFRLLKKLKKAGVH--FSGIAVETGSP 311

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS--DFIVGFPGETDDDFRATMDLVDKIG 358
           R+ K + +     +  + I+    +  D+ I++   F++GFP ET D+  AT+D   +  
Sbjct: 312 RLQKLIKKNLDLTKVNESIN----MAFDLGITTVGFFMLGFPSETRDELLATVDFACRSR 367

Query: 359 YAQAFSFKYSPRLGTP 374
              A  F  +P  GTP
Sbjct: 368 LNFATFFVVTPFEGTP 383


>gi|312876436|ref|ZP_07736420.1| Coproporphyrinogen dehydrogenase [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311796794|gb|EFR13139.1| Coproporphyrinogen dehydrogenase [Caldicellulosiruptor
           lactoaceticus 6A]
          Length = 471

 Score = 38.9 bits (89), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 41/192 (21%), Positives = 87/192 (45%), Gaps = 23/192 (11%)

Query: 190 CTFCVVPY--TRGIEISRSLSQVVDEARKLI----DNGVCEITLLGQNVNAWRGK----- 238
           C +  +P   T+ +  S S  ++  + + LI    D+ +CE+    Q +   + +     
Sbjct: 157 CLYIGIPICPTKCLYCSFSCHEITRQVKSLIGMYTDSLICELGKTYQKIEENKNRIVAIY 216

Query: 239 ---------GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV-LM 288
                    G +  K  F++L  +L E K +  + +    P  + + +++   +++  L 
Sbjct: 217 FGGGSPAVLGKENIKKIFTNLFENL-EKKHIQEITFEAGRPDTIDEKILQYLSEINQDLN 275

Query: 289 PYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFR 348
             L +  Q+ +D  LK + R H+  + ++   +         I+SD I+G PGE ++D++
Sbjct: 276 VRLCINPQTSNDNTLKIIGRNHSFEDIKRAFAQAYKYSFK-NINSDVILGLPGEDENDYK 334

Query: 349 ATMDLVDKIGYA 360
            T+D V K+  A
Sbjct: 335 RTIDDVLKLSPA 346


>gi|312864772|ref|ZP_07725003.1| radical SAM protein, TIGR01212 family [Streptococcus downei F0415]
 gi|311099899|gb|EFQ58112.1| radical SAM protein, TIGR01212 family [Streptococcus downei F0415]
          Length = 308

 Score = 38.9 bits (89), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 29/55 (52%)

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDD 345
           L L +Q+  +   K +NR H+   Y   + R+R + P + I S  I G PGET +
Sbjct: 144 LELGLQTTYEATSKLINRAHSYQLYVDTVKRVRELAPKVEIVSHLINGLPGETHE 198


>gi|302349081|ref|YP_003816719.1| Fe-S oxidoreductase [Acidilobus saccharovorans 345-15]
 gi|302329493|gb|ADL19688.1| Fe-S oxidoreductase [Acidilobus saccharovorans 345-15]
          Length = 536

 Score = 38.9 bits (89), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 52/257 (20%), Positives = 104/257 (40%), Gaps = 34/257 (13%)

Query: 128 VGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCD 187
           +GP  + RL   L        V      +ED    L+  +GG          + +  GC 
Sbjct: 189 LGPSVFSRL---LRGEPLPPVVSAPPAKLEDIPTILTPANGG---------LVEVSRGCG 236

Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDEARKLID-NGVCEITLLGQNVNAWRGKGLDGEKCT 246
           + C+FC    +  I+       +  E R  I+  G+ +I L  +    +  KG++     
Sbjct: 237 RGCSFCTPTLSGAIKSLPFEGHIDQEIRVNIERGGMKDINLHSEEFFRYGAKGIEPNPEK 296

Query: 247 FSDLL---YSLSEIKG---LVRLRYTTSHPRDMSDCLIKA------HGDLDVLMPYLHLP 294
             +L    Y L +  G    +   +TT+        +++        GD      ++ + 
Sbjct: 297 VIELTRKAYRLVKSYGDEYTISTDFTTAAAVAYRPKMVEEAAQYINEGDRRT---FIEMG 353

Query: 295 VQSGSDRILKSM----NRRHTAYEYRQIIDRIRSVRPD--IAISSDFIVGFPGETDDDFR 348
           +++GS R+L+ +       +T  +Y +++++   +  D    +    IV  PGET+DD  
Sbjct: 354 IETGSPRLLRKLMPGKALPYTPEQYPEVVEQAIGILNDNRWVVVGTMIVNLPGETEDDVI 413

Query: 349 ATMDLVDKIGYAQAFSF 365
             ++L+D+I   +  +F
Sbjct: 414 YDLELLDRIKKLRVITF 430


>gi|162453798|ref|YP_001616165.1| hypothetical protein sce5522 [Sorangium cellulosum 'So ce 56']
 gi|161164380|emb|CAN95685.1| hypothetical protein predicted by Glimmer/Critica [Sorangium
           cellulosum 'So ce 56']
          Length = 476

 Score = 38.9 bits (89), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 88/207 (42%), Gaps = 26/207 (12%)

Query: 176 VTAFLTIQEGCDKFCTFCVVP-YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA 234
           V   L    GC   C+FC VP    G  +     + VDE   + D          Q   A
Sbjct: 155 VPRVLQATRGCPFTCSFCTVPDLNPGFRV-----RPVDEV--IRDIATTHFPRFWQEKVA 207

Query: 235 W-RGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS-----HPRDMSDCLIKAHGDLDVLM 288
           W     L  ++    +LL    E+ GL R   T +       R++ D + ++ G + +  
Sbjct: 208 WFWDDNLLVQRRWAKELL---RELAGLDRWWLTQASIDIVKDRELLDAMERS-GCIGIF- 262

Query: 289 PYLHLPVQSGSDRILKSMNRRHT-AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDF 347
               L ++S  +  LKS+++R   A EYR+ I ++      I + + FI GF  +T +  
Sbjct: 263 ----LGIESLDEADLKSVDKRQNRAREYREAIRKLHDR--GICVMAGFISGFDDQTPEVI 316

Query: 348 RATMDLVDKIGYAQAFSFKYSPRLGTP 374
            +T D +++IG    F    +P  GTP
Sbjct: 317 ASTADRLNEIGVDVPFLSILTPFRGTP 343


>gi|282898676|ref|ZP_06306664.1| Radical SAM [Cylindrospermopsis raciborskii CS-505]
 gi|281196544|gb|EFA71453.1| Radical SAM [Cylindrospermopsis raciborskii CS-505]
          Length = 546

 Score = 38.9 bits (89), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 57/234 (24%), Positives = 99/234 (42%), Gaps = 36/234 (15%)

Query: 186 CDKFCTFCVVPYT----RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD 241
           C + C FC+  Y     R   +  SL   +++  K+ +     + LLG +V         
Sbjct: 234 CPEMCRFCLASYLTLPFRTASLEGSLIPAIEQGLKITN----RLGLLGASVT-------- 281

Query: 242 GEKCTFSDLLYSLSEIK-GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300
            +   FSDLL  +S+ K   VRL   +     ++  L       D     L + V+SGS+
Sbjct: 282 -QHPEFSDLLDYISQPKYDDVRLSVASVRTNTVTQKLAHTLATRDCHS--LTIAVESGSE 338

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPD--IAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           ++ + +N++    + ++II    + +      +    +VG PGE  +D  AT+ ++  I 
Sbjct: 339 KLRQIINKK---LDNQEIIQAAINAKAGGLSGLKLYGMVGIPGEEPEDLDATVTMMRDIK 395

Query: 359 YAQA------FSFKYSPRLGTPGSNMLEQVDENVKAE-RLLCLQKKLREQQVSF 405
            A            + P+  TP     +    N  AE RL  LQK+L+ Q + F
Sbjct: 396 KATPGLRLTLGCSTFVPKSHTP----FQWFGVNKSAEKRLQFLQKQLKPQGIDF 445


>gi|297619609|ref|YP_003707714.1| hypothetical protein Mvol_1084 [Methanococcus voltae A3]
 gi|297378586|gb|ADI36741.1| conserved hypothetical protein [Methanococcus voltae A3]
          Length = 352

 Score = 38.9 bits (89), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 2/68 (2%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           ++ L VQS  D+ L  +NR+H A +    I   +     I +    I+G PGET  + R 
Sbjct: 189 WIDLGVQSLQDKTLDLLNRKHNATDTLNAIKNCKER--GIKVCGHIILGLPGETKKEMRE 246

Query: 350 TMDLVDKI 357
           T +L+  I
Sbjct: 247 TAELLSLI 254


>gi|134098063|ref|YP_001103724.1| coproporphyrinogen III oxidase [Saccharopolyspora erythraea NRRL
           2338]
 gi|133910686|emb|CAM00799.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Saccharopolyspora erythraea NRRL 2338]
          Length = 409

 Score = 38.9 bits (89), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 51/111 (45%), Gaps = 6/111 (5%)

Query: 293 LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352
           L +QS +  +L+ + RRHT     +     R+      ++ D I G PGETDDD RA++D
Sbjct: 154 LGMQSAAQHVLRVLERRHTPGRAVEAAREARAAGFG-HVNLDLIYGTPGETDDDLRASLD 212

Query: 353 LVDKIGYAQAFSFKYSPRLGTPGSNM-----LEQVDENVKAERLLCLQKKL 398
            V + G     ++      GT  +       L   DE+V A+R   L   L
Sbjct: 213 AVLEAGVDHVSAYSLIVEDGTAMARKVRRGDLPMPDEDVLADRYELLDGVL 263


>gi|218778961|ref|YP_002430279.1| oxygen-independent coproporphyrinogen III oxidase
           [Desulfatibacillum alkenivorans AK-01]
 gi|218760345|gb|ACL02811.1| oxygen-independent coproporphyrinogen III oxidase
           [Desulfatibacillum alkenivorans AK-01]
          Length = 377

 Score = 38.9 bits (89), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 3/70 (4%)

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
           + L VQS  D+ L+ + R H+A+E R  +D       D ++  D I G PG+T + +  T
Sbjct: 112 ISLGVQSLDDQTLQFLGRIHSAFEARLALDWAMEAGFD-SVGCDLIYGVPGQTRESW--T 168

Query: 351 MDLVDKIGYA 360
            DL D + Y 
Sbjct: 169 KDLEDVLAYG 178


>gi|170289794|ref|YP_001736610.1| magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase
           [Candidatus Korarchaeum cryptofilum OPF8]
 gi|170173874|gb|ACB06927.1| Magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase
           [Candidatus Korarchaeum cryptofilum OPF8]
          Length = 483

 Score = 38.9 bits (89), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 48/190 (25%), Positives = 84/190 (44%), Gaps = 29/190 (15%)

Query: 185 GCDKFCTFCVVPYTRG-IEISRSLSQVVDEARKLI-DNGVCEITLLGQN--VNAWRGKGL 240
           GC   C FC      G I  + S+ +VV+E R L  D G+ EI  L     +N  R + +
Sbjct: 203 GCPFNCIFCSSSLQFGSIWRAHSVRRVVEELRLLREDFGIREIEFLDDTFTLNRKRAREI 262

Query: 241 DGEKCTFS-DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
             E      DL +S S            +  R+ +D + +A          ++L ++SG+
Sbjct: 263 CDEIVREGIDLSWSASS--------RVNTLDRETADSMRRAGAHT------VYLGIESGT 308

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRS-VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
            R+L  + +  T     Q +D +++ ++  +     F++GFP E  +D   T      IG
Sbjct: 309 QRVLDFIGKGITV---TQAVDAVKTALKSGLQALGSFVIGFPIERKEDIERT------IG 359

Query: 359 YAQAFSFKYS 368
           +A++   KY+
Sbjct: 360 FAKSLGLKYA 369


>gi|257869207|ref|ZP_05648860.1| coproporphyrinogen III oxidase [Enterococcus gallinarum EG2]
 gi|257803371|gb|EEV32193.1| coproporphyrinogen III oxidase [Enterococcus gallinarum EG2]
          Length = 388

 Score = 38.9 bits (89), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 1/68 (1%)

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
           L + VQ+  +R+LK + R+HTA +  Q I R+        I+ D I   PG+T + FR T
Sbjct: 126 LSMGVQTFDNRLLKKIGRKHTAEDVYQTI-RLLDKHDFQNITIDLIYALPGQTMESFRDT 184

Query: 351 MDLVDKIG 358
           +     +G
Sbjct: 185 LTRAIDLG 192


>gi|146296038|ref|YP_001179809.1| coproporphyrinogen III oxidase [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145409614|gb|ABP66618.1| coproporphyrinogen III oxidase, anaerobic [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 486

 Score = 38.9 bits (89), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 41/181 (22%), Positives = 83/181 (45%), Gaps = 14/181 (7%)

Query: 189 FCTFCVVPYTRGIE-----ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
           +C+F     T+ IE      +++L   +++  KLI+    +I  +     +    G+   
Sbjct: 185 YCSFSCHELTKRIESLLSLYTQALLTELEKTYKLIEENKNKIVAIYFGGGSPAVIGVQNI 244

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHP----RDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
           K  F  L  +L ++K +    +    P    R++ + L     D ++    L +  Q+ +
Sbjct: 245 KRIFESLFANL-DVKDIRETTFEAGRPDTINRELLELLALYKKDFNIR---LCINPQTSN 300

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
           D+ LK + R HT  + ++  +  +    +  I+SD I+G P E ++DF+ T+  V  +G 
Sbjct: 301 DQTLKIIGRNHTFDDIKKAFELAKEYGFE-NINSDVILGLPNEIEEDFKKTIYDVLNLGP 359

Query: 360 A 360
           A
Sbjct: 360 A 360


>gi|315657198|ref|ZP_07910082.1| coproporphyrinogen dehydrogenase [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
 gi|315492301|gb|EFU81908.1| coproporphyrinogen dehydrogenase [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
          Length = 471

 Score = 38.9 bits (89), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 4/90 (4%)

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD-IAISSDFIVGFPGETDDDFRATMDL 353
           +QS    +L ++NR H   + + ++  +R+ R   + +S D I G PGE+  D+R ++D 
Sbjct: 163 MQSAVPAVLATLNRTH---QQKHLVAGVRAARAQGLEVSVDLIYGTPGESLADWRTSLDA 219

Query: 354 VDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
             ++G      +      GT     L Q D
Sbjct: 220 ALELGADHVSCYALVIEPGTALGRALAQGD 249


>gi|312127058|ref|YP_003991932.1| Radical SAM domain-containing protein [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311777077|gb|ADQ06563.1| Radical SAM domain protein [Caldicellulosiruptor hydrothermalis
           108]
          Length = 471

 Score = 38.9 bits (89), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 42/190 (22%), Positives = 86/190 (45%), Gaps = 25/190 (13%)

Query: 190 CTFCVVPY--TRGIEISRSLSQVVDEARKLI----DNGVCEITLLGQNVNAWRGK----- 238
           C +  +P   TR +  S S  ++  + + LI    D+ +CE     Q +   + +     
Sbjct: 157 CLYIGIPICPTRCLYCSFSCHEMTRQVKSLIGMYTDSLICEFEKTYQKIEENKNRIVAVY 216

Query: 239 ---------GLDGEKCTFSDLLYSLSEIKGLVR-LRYTTSHPRDMSDCLIKAHGDLDV-L 287
                    G++  K  F++L  +L   K  +R + +    P  + + L++   +++  L
Sbjct: 217 FGGGSPAVLGIENIKKIFTNLFENLE--KDYIREITFEAGRPDTIDEKLLQYLAEINQDL 274

Query: 288 MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDF 347
              L +  Q+ +D  LK + R HT  + ++   +         I+SD I+G PGE ++D+
Sbjct: 275 NVRLCINPQTSNDNTLKIIGRNHTFEDIKRAFAQAYEYGFK-NINSDVILGLPGEGENDY 333

Query: 348 RATMDLVDKI 357
           + T++ V K+
Sbjct: 334 KKTIEDVLKL 343


>gi|239927883|ref|ZP_04684836.1| anaerobic magnesium-protoporphyrin IX monomethyl ester cyclase
           elongator protein [Streptomyces ghanaensis ATCC 14672]
          Length = 504

 Score = 38.9 bits (89), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 58/215 (26%), Positives = 79/215 (36%), Gaps = 48/215 (22%)

Query: 178 AFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWR 236
           A +    GC   C+FC         + RS   VV E  +L +  GV EI          R
Sbjct: 233 ATMISSRGCPFKCSFCFKQAVDKKSMYRSPEDVVGEMTELKERWGVKEIMFYDDVFTLHR 292

Query: 237 GK-----GLDGE--------KCTFSDL----LYSLSEIKGLVRLRYTTSHPRDMSDCLIK 279
           G+     GL GE          T  DL    L       G VRLR+   H          
Sbjct: 293 GRVREICGLIGETGLKVRWEAPTRVDLVPEPLLEAMAGAGCVRLRFGIEH---------- 342

Query: 280 AHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGF 339
             GD ++L     +  +S   +I K++   H A                I     FIVG+
Sbjct: 343 --GDSEILE---RMRKESDIQKIEKAVTSAHEA---------------GIKGFGYFIVGW 382

Query: 340 PGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
            GET + FR T+DL  ++    A  +  +P  GTP
Sbjct: 383 LGETREQFRRTVDLACRLPLDYASFYTATPLPGTP 417


>gi|257468752|ref|ZP_05632846.1| Radical SAM domain protein [Fusobacterium ulcerans ATCC 49185]
 gi|317063006|ref|ZP_07927491.1| radical SAM domain-containing protein [Fusobacterium ulcerans ATCC
           49185]
 gi|313688682|gb|EFS25517.1| radical SAM domain-containing protein [Fusobacterium ulcerans ATCC
           49185]
          Length = 407

 Score = 38.9 bits (89), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 52/210 (24%), Positives = 91/210 (43%), Gaps = 40/210 (19%)

Query: 185 GCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK 244
           GCD  C+FC +         R +  V++E + L  +   +I     N             
Sbjct: 149 GCDNKCSFCAISEMWKSN-PRPVEDVIEEIKSLKSD---KIIFFDPNF------------ 192

Query: 245 CTFSDLLYSLSEIKGLVRLRY------TTSHPRDMSDCLIKA---HGDLDVLMPYLHLPV 295
             F    YSL  +K + +L+       T   P D  D L++A    G   +L+ +     
Sbjct: 193 --FYPKEYSLKLMKEMEKLKIKWAGNGTADAPFD--DELMEAAKRSGCSGILIGF----- 243

Query: 296 QSGSDRILKSMNRRHTAYE-YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           +S  +  LK +N++ +  E Y+  IDR    + +IAI+  F++G  G+T++D  A   L 
Sbjct: 244 ESLREETLKGVNKKFSNVERYKDCIDRAH--KYNIAINGCFVLGMDGDTEEDLLA---LP 298

Query: 355 DKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           +KI Y      ++S     P S +  ++D+
Sbjct: 299 EKIKYLGLDLARFSILTPLPNSELYRKMDK 328


>gi|171316947|ref|ZP_02906154.1| hopanoid biosynthesis associated radical SAM protein HpnJ
           [Burkholderia ambifaria MEX-5]
 gi|171097871|gb|EDT42691.1| hopanoid biosynthesis associated radical SAM protein HpnJ
           [Burkholderia ambifaria MEX-5]
          Length = 473

 Score = 38.9 bits (89), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 55/211 (26%), Positives = 88/211 (41%), Gaps = 35/211 (16%)

Query: 185 GCDKFCTFCVVPYTRGIEI--SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG 242
           GC   CTFC+ P T       +RS+  V+ EA+ + DN + E+  L           +  
Sbjct: 205 GCKSRCTFCLWPQTVSGHRYRTRSVENVLAEAKWIRDN-MPEVKEL-----------MFD 252

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL-------MPYLHLPV 295
           +     DL  + +   GL +L  T S       C  KA+     L       +  L +  
Sbjct: 253 DDTFTDDLPRAEAIAIGLGKLGMTWS-------CNAKANVPYKTLKVMKENGLRLLLVGF 305

Query: 296 QSGSDRILKSMNRR-HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           +SG D+IL ++ +   T +  R   D     +  I I   FI+G PGET +  R T++  
Sbjct: 306 ESGDDQILVNIKKGVRTDFARRFSAD---CKKLGIKIHGTFILGLPGETQETIRKTIEYA 362

Query: 355 DKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            +I      + + S     PG+ + +Q  EN
Sbjct: 363 KEI---NPHTIQVSLAAPYPGTTLYKQAVEN 390


>gi|160874375|ref|YP_001553691.1| putative radical SAM protein [Shewanella baltica OS195]
 gi|160859897|gb|ABX48431.1| conserved hypothetical radical SAM protein [Shewanella baltica
           OS195]
 gi|315266610|gb|ADT93463.1| conserved hypothetical protein [Shewanella baltica OS678]
          Length = 309

 Score = 38.9 bits (89), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 2/69 (2%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +L L +Q+  D  L+ +NR H    Y   + R R+    + + +  I+G P ET  D+ A
Sbjct: 147 WLELGLQTAKDETLRKINRGHDFGCYCDTVSRARA--RGLKVCTHLILGLPDETHSDYMA 204

Query: 350 TMDLVDKIG 358
           T+  V + G
Sbjct: 205 TLAAVLQQG 213


>gi|52550390|gb|AAU84239.1| Fe-S oxidoreductase [uncultured archaeon GZfos3D4]
          Length = 530

 Score = 38.9 bits (89), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 40/195 (20%), Positives = 87/195 (44%), Gaps = 15/195 (7%)

Query: 176 VTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW 235
           +   + I  GC + C+FC  P  + +   +S+  +  +A+  I+ G   I+L  ++V  +
Sbjct: 222 IHGLVEIGRGCGRGCSFCT-PDMQRLRF-KSVEHIARDAKTNIEAGQRSISLHSEDVLRY 279

Query: 236 RGKGLDGEKCTFSDLLYSLSEIKGL-------VRLRYTTSHPRDMSDCLIKAHGDLDVLM 288
             KG+  +      L   ++ I+G+       + L     +P  ++      +  LD   
Sbjct: 280 GAKGIAPDDERVMKLFRCVASIEGIKDIGASHIALATAYHNPGLVNAISEMCYSMLDQEW 339

Query: 289 PYLHLPVQSGSDRILKSMNR----RHTAYEYRQIIDRIRSVRPDIAI--SSDFIVGFPGE 342
                 +++GS R++    R       A ++++I+ +  ++  D     ++  I G PGE
Sbjct: 340 MGAQTGIETGSARLIAKHMRGKALPSPAEKWQEIVTQAFAILDDNNWFNAATMINGLPGE 399

Query: 343 TDDDFRATMDLVDKI 357
           T DD   +++LV+ +
Sbjct: 400 TVDDVIKSIELVEDL 414


>gi|332799108|ref|YP_004460607.1| Radical SAM domain-containing protein [Tepidanaerobacter sp. Re1]
 gi|332696843|gb|AEE91300.1| Radical SAM domain protein [Tepidanaerobacter sp. Re1]
          Length = 573

 Score = 38.9 bits (89), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 61/269 (22%), Positives = 113/269 (42%), Gaps = 52/269 (19%)

Query: 158 DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEAR-K 216
           +K++  S++   Y   + +   + I  GC + C FC+  Y   +   RS+ ++++ +   
Sbjct: 226 NKYDTESVILTPYTEFKDM-FLIEISRGCGRNCRFCMAGYCYRVPRYRSMDKILERSEFG 284

Query: 217 LIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDC 276
           L   G  +I L+G  V+ +       EK   + + +S+S       LR  T     M   
Sbjct: 285 LKYKG--KIGLVGAAVSDYPFIDELAEKFVENGIKFSVSS------LRADTLREPLMMGL 336

Query: 277 LIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT----------AYEYRQIIDRIRSVR 326
               H  L V         ++GS+R+ K +N+  T          AY+Y   I+ ++   
Sbjct: 337 AYSGHKTLTV-------APEAGSNRLRKIINKGITDEHVINAVKLAYQYS--IENVKLY- 386

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIG-YAQAFSFK----------YSPRLGTPG 375
                   +I+G PGET+DD    +D +  +  Y +A   K          + P+  TP 
Sbjct: 387 --------YIIGLPGETEDDIDEMIDFLTFLKDYMKALGNKRGNLTISINPFIPKPFTPF 438

Query: 376 SNM-LEQVDENVKAERLLCLQKKLREQQV 403
             + +E V   V  ER+  +Q +L+ + +
Sbjct: 439 QWLGMESV--GVLNERIKLIQNRLKPKGI 465


>gi|302348325|ref|YP_003815963.1| Radical SAM domain protein [Acidilobus saccharovorans 345-15]
 gi|302328737|gb|ADL18932.1| Radical SAM domain protein [Acidilobus saccharovorans 345-15]
          Length = 479

 Score = 38.5 bits (88), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 6/86 (6%)

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
           L+  V+S S   L  + ++ T  + R++ +  R ++   A  S FI+GFP ET DD + T
Sbjct: 302 LYFGVESASQETLNRIGKKITIEQARRVFEWKRELK-GFATGS-FILGFPWETVDDMKRT 359

Query: 351 MDLVDKIG--YAQAFSFKYSPRLGTP 374
             L  ++   YAQ  +   +P  GTP
Sbjct: 360 AQLAVELSPDYAQFTAL--TPYPGTP 383


>gi|46200709|ref|ZP_00056585.2| COG1032: Fe-S oxidoreductase [Magnetospirillum magnetotacticum
           MS-1]
          Length = 465

 Score = 38.5 bits (88), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 2/89 (2%)

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
           L +  +SGS R+LK + +         ++ RI++    + +   FI GFPGET +D   T
Sbjct: 294 LTIAPESGSRRVLKQIKKSLDPDIVPDVVRRIKAA--GLGVRGFFIFGFPGETREDIDET 351

Query: 351 MDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
           + L+ +  +      ++ P  GTP  N +
Sbjct: 352 IGLIRRCDFDTFNIGRFLPIPGTPIFNQM 380


>gi|289809829|ref|ZP_06540458.1| hypothetical protein Salmonellaentericaenterica_37662 [Salmonella
           enterica subsp. enterica serovar Typhi str. AG3]
          Length = 106

 Score = 38.5 bits (88), Expect = 2.1,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 14/89 (15%)

Query: 60  DDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILR 119
           DDAD++++NTC   + A ++    +G   N       E G   V+V GC+   E ++I  
Sbjct: 2   DDADMVIVNTCGFIDSAVQESLEAIGEALN-------ENGK--VIVTGCLGAKE-DQIRE 51

Query: 120 RSPIVNVVVGPQTYYRLPELLERARFGKR 148
             P V  + GP +Y    EL   AR   R
Sbjct: 52  VHPKVLEITGPHSY----ELSSAARTSLR 76


>gi|171780243|ref|ZP_02921147.1| hypothetical protein STRINF_02031 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171281591|gb|EDT47026.1| hypothetical protein STRINF_02031 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 311

 Score = 38.5 bits (88), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 29/55 (52%)

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDD 345
           + L +Q+  D   K +NR HT   Y + + R+R + P + I S  I G PGE  +
Sbjct: 144 VELGLQTTYDETSKIINRAHTYDLYVKTVKRLRELAPKVEIVSHLINGLPGENHE 198


>gi|302875143|ref|YP_003843776.1| Radical SAM domain-containing protein [Clostridium cellulovorans
           743B]
 gi|307690225|ref|ZP_07632671.1| Radical SAM domain-containing protein [Clostridium cellulovorans
           743B]
 gi|302578000|gb|ADL52012.1| Radical SAM domain protein [Clostridium cellulovorans 743B]
          Length = 564

 Score = 38.5 bits (88), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 7/90 (7%)

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           V+SGS  +L  M++  +  + R  +  +      I  ++ +++G PGET++DF  T+ L+
Sbjct: 372 VESGSQHVLDLMSKGISVDQTRNALASLSYA--GIKTTTYWVIGHPGETEEDFNQTLKLL 429

Query: 355 ----DKIGYAQAFSFKYSPRLGTPGSNMLE 380
               D I  A+   F+Y    G P +N  E
Sbjct: 430 ESCKDDIWQAECHIFEYFYD-GQPSNNEWE 458


>gi|225849941|ref|YP_002730175.1| radical SAM protein, family [Persephonella marina EX-H1]
 gi|225646612|gb|ACO04798.1| radical SAM protein, family [Persephonella marina EX-H1]
          Length = 307

 Score = 38.5 bits (88), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 19/69 (27%), Positives = 37/69 (53%), Gaps = 1/69 (1%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           ++   +Q+ + + L+ +NR H   E+   + R +  R  I + +  IVG PG+T +D+  
Sbjct: 142 WIEYGLQTANIKTLREINRGHGVSEFVDAVLRTKK-RAGIKVCAHMIVGLPGDTFEDYVE 200

Query: 350 TMDLVDKIG 358
           T  L+  +G
Sbjct: 201 TAKLIAALG 209


>gi|224495618|gb|ACN52303.1| TsrM [Streptomyces laurentii]
 gi|225055396|gb|ACN80682.1| TsrT [Streptomyces laurentii]
          Length = 599

 Score = 38.5 bits (88), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 2/65 (3%)

Query: 170 YNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS-RSLSQVVDEARKLIDNGVCEITLL 228
           Y R+ G+ + LT + GC   C+FCV P  +G + + R ++ VVDE   L   G+ ++   
Sbjct: 238 YYREGGLGSILT-KNGCVYKCSFCVEPDAKGTQFARRGITAVVDEMEALTAQGIHDLHTT 296

Query: 229 GQNVN 233
               N
Sbjct: 297 DSEFN 301


>gi|163787295|ref|ZP_02181742.1| coproporphyrinogen oxidase (coproporphyrinogen III oxidase)
           [Flavobacteriales bacterium ALC-1]
 gi|159877183|gb|EDP71240.1| coproporphyrinogen oxidase (coproporphyrinogen III oxidase)
           [Flavobacteriales bacterium ALC-1]
          Length = 377

 Score = 38.5 bits (88), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 28/114 (24%), Positives = 53/114 (46%), Gaps = 7/114 (6%)

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
           L + +QS  +  LK MNR H A E ++ +        +I++  D I G PG +++ + A 
Sbjct: 114 LSIGIQSFFEADLKLMNRAHNAKEAKECLYVATQYFDNISL--DLIYGIPGASNEQWLAN 171

Query: 351 --MDLVDKIGYAQAFSFKYSPRLGTPG---SNMLEQVDENVKAERLLCLQKKLR 399
             M L   + +  +++    P+          ++E VD+    E+   L++KL 
Sbjct: 172 IEMALSYNVPHISSYALTVEPKTALAAFIKKGIIEDVDDEQAHEQFYILKEKLE 225


>gi|159042408|ref|YP_001541660.1| radical SAM domain-containing protein [Caldivirga maquilingensis
           IC-167]
 gi|157921243|gb|ABW02670.1| Radical SAM domain protein [Caldivirga maquilingensis IC-167]
          Length = 548

 Score = 38.5 bits (88), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 45/209 (21%), Positives = 90/209 (43%), Gaps = 22/209 (10%)

Query: 176 VTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN----GVCEITLLGQN 231
           +   + +  GC + C FC  P   G+  S      +D  +++I N    G   ITL  + 
Sbjct: 228 IGGLVEVTRGCGRGCEFCT-PTLNGMISSFPFEGHID--KEIIINIEKGGHKSITLHSEE 284

Query: 232 VNAWRGKGLDGEKCTFSDLL---YSLSEIKG---LVRLRYTTSHPRDMSDCLIKAHGDL- 284
              +  K +D       DL+   Y L +  G    +   +TT+     +  L+K  G+  
Sbjct: 285 FFRYGAKSIDPNPDKVKDLVVKAYKLIKRYGDEYRLHTDFTTAAVVVQAPDLVKFVGEYM 344

Query: 285 --DVLMPYLHLPVQSGSDRILKSM----NRRHTAYEYRQIIDRIRSVRPD--IAISSDFI 336
                  ++ + +++GS R+L  +     +  T  +Y  I+++   +  D    +    I
Sbjct: 345 NEGGEWSFIEMGIETGSPRLLNMLMVGKAKPFTPRQYPDIVEQAVGILNDNRWVVVGTMI 404

Query: 337 VGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           +  PGE D+D  A+++L+D++   +  +F
Sbjct: 405 LNLPGERDEDVAASIELLDRLKKYRILTF 433


>gi|167945968|ref|ZP_02533042.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 56

 Score = 38.5 bits (88), Expect = 2.3,   Method: Composition-based stats.
 Identities = 15/34 (44%), Positives = 23/34 (67%)

Query: 343 TDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
           T+ DF  T+ L++ IG+  ++SF YS R GTP +
Sbjct: 2   TEQDFNDTLKLIEAIGFDHSYSFIYSRRPGTPAA 35


>gi|330993745|ref|ZP_08317679.1| Putative methyltransferase [Gluconacetobacter sp. SXCC-1]
 gi|329759319|gb|EGG75829.1| Putative methyltransferase [Gluconacetobacter sp. SXCC-1]
          Length = 446

 Score = 38.5 bits (88), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 47/193 (24%), Positives = 84/193 (43%), Gaps = 21/193 (10%)

Query: 185 GCDKFCTFCVVP-YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
           GC   C FC    Y  G    R + Q+V E  ++ + G       G++          G+
Sbjct: 178 GCPFVCDFCSERFYLGGRYRWRPVDQMVGELERIKNRG--SHFFFGES-------NFGGK 228

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLH--LPVQSGSDR 301
           K    +L+  L  +K    +R++T    ++  CL     DL      +H  + ++S  + 
Sbjct: 229 KSRAMELMEGLVPLK----IRWSTLWSSNL--CLDTGFLDLARQSGVMHVNIGIESIDEE 282

Query: 302 ILKSMNR-RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
           +L+ M +  + A  Y ++ D +R  R DI+ S +FI G+  E  D + AT+  ++     
Sbjct: 283 MLQGMKKGWNKASRYGEMFDNLR--RRDISYSLNFIFGYDEEHPDVYEATLSFLEAHKVP 340

Query: 361 QAFSFKYSPRLGT 373
            A+    +P  GT
Sbjct: 341 AAYFNILTPTRGT 353


>gi|298346288|ref|YP_003718975.1| coproporphyrinogen dehydrogenase [Mobiluncus curtisii ATCC 43063]
 gi|298236349|gb|ADI67481.1| coproporphyrinogen dehydrogenase [Mobiluncus curtisii ATCC 43063]
          Length = 439

 Score = 38.5 bits (88), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 4/90 (4%)

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD-IAISSDFIVGFPGETDDDFRATMDL 353
           +QS    +L ++NR H   + + ++  +R+ R   + +S D I G PGE+  D+R ++D 
Sbjct: 131 MQSAVPAVLATLNRTH---QQKHLVAGVRAARAQGLEVSVDLIYGTPGESLADWRPSLDA 187

Query: 354 VDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
             ++G      +      GT     L Q D
Sbjct: 188 ALELGVDHVSCYALVIEPGTALGRALAQGD 217


>gi|302526115|ref|ZP_07278457.1| predicted protein [Streptomyces sp. AA4]
 gi|302435010|gb|EFL06826.1| predicted protein [Streptomyces sp. AA4]
          Length = 553

 Score = 38.5 bits (88), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 2/57 (3%)

Query: 170 YNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS-RSLSQVVDEARKLIDNGVCEI 225
           Y R+ G+   LT + GC   CT CV P  +G   + R+ S V DE   L++ GV ++
Sbjct: 202 YYRRGGLGNILT-RNGCPFACTHCVEPDAKGTRFALRAPSAVADEMESLVEQGVHDL 257


>gi|291612894|ref|YP_003523051.1| oxygen-independent coproporphyrinogen III oxidase [Sideroxydans
           lithotrophicus ES-1]
 gi|291583006|gb|ADE10664.1| oxygen-independent coproporphyrinogen III oxidase [Sideroxydans
           lithotrophicus ES-1]
          Length = 467

 Score = 38.5 bits (88), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 62/298 (20%), Positives = 113/298 (37%), Gaps = 37/298 (12%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C+  C +C         +++  S+     R LI     +  LLG+     +     G   
Sbjct: 71  CNTLCFYCACNKV----VTKDFSKADQYIRYLIKEIGMQAALLGKERRVEQLHFGGGTPT 126

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSH---------PRDMSDCLIKAHGDLDVLMPYLHLPVQ 296
             SD    L ++ G +R  +             PR +SD  +   G+L      + + VQ
Sbjct: 127 FLSD--DELRQVMGAIRKNFQLVEDGEYSIEIDPRKVSDATVALLGELG--FNRISIGVQ 182

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV-- 354
                + K++NR  +  E  Q+I   R+     ++S D I G P +T   F+AT+D V  
Sbjct: 183 DFDPEVQKAVNRIQSEAETLQVIKAARA-NGFKSVSIDLIYGLPKQTMAGFKATLDKVIA 241

Query: 355 ---DKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVG 411
              D++     +++ + P L  P           +  E L   Q KL   +++ N     
Sbjct: 242 ANPDRLS---IYNYAHMPTLFKP--------QRRIHDEDLPAPQTKLDILKLAVNTLTDA 290

Query: 412 QIIEVLIEKHGKEKGKL--VGRSPWLQSVVLNSKNHNIGDIIKVRITDV-KISTLYGE 466
             + + ++   K   +L    R   L         H+  D+I V ++ + K+   Y +
Sbjct: 291 GYVYIGMDHFAKPDDELAVAQRQGRLHRNFQGYSTHSDCDLIAVGVSSIGKVGPTYSQ 348


>gi|169350126|ref|ZP_02867064.1| hypothetical protein CLOSPI_00868 [Clostridium spiroforme DSM 1552]
 gi|169293339|gb|EDS75472.1| hypothetical protein CLOSPI_00868 [Clostridium spiroforme DSM 1552]
          Length = 363

 Score = 38.5 bits (88), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 20/68 (29%), Positives = 40/68 (58%), Gaps = 1/68 (1%)

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
           L + V++ +D ILK +NR+HT+   ++II   + +  D  IS D + G P +T  D +  
Sbjct: 112 LSIGVETFNDNILKKINRKHTSDMVKRIIRYGQQLEFD-NISIDLMYGLPDQTLQDIKND 170

Query: 351 MDLVDKIG 358
           +++++ + 
Sbjct: 171 LNIIESLN 178


>gi|226357315|ref|YP_002787055.1| coproporphyrinogen dehydrogenase [Deinococcus deserti VCD115]
 gi|226319305|gb|ACO47301.1| putative Coproporphyrinogen dehydrogenase (Oxygen-independent
           coproporphyrinogen-III oxidase) [Deinococcus deserti
           VCD115]
          Length = 390

 Score = 38.5 bits (88), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 46/99 (46%), Gaps = 8/99 (8%)

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGET-DDDFRATMDL 353
           VQS  D  L+ + R+H A + R+ +  +  V     +S D I   PG+  D D R  +DL
Sbjct: 127 VQSLHDPTLRFLGRQHDAAQAREAVTTL--VGSGFRVSGDLITAVPGQPLDSDIRGLVDL 184

Query: 354 VDKIGYAQAFSFKYSP--RLGTPGSNMLEQVDENVKAER 390
              +G+  A++    P       G N+ E  DE +  ER
Sbjct: 185 --GVGHVSAYTLTIEPGTEFARRGVNVTED-DERLGFER 220


>gi|188590566|ref|YP_001919521.1| radical SAM protein, family [Clostridium botulinum E3 str. Alaska
           E43]
 gi|188500847|gb|ACD53983.1| radical SAM protein, family [Clostridium botulinum E3 str. Alaska
           E43]
          Length = 312

 Score = 38.5 bits (88), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 2/72 (2%)

Query: 287 LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDD 346
           L  ++ L +Q+ +D + K +NR +    +   + R++    D+ + S  I+G PGE+ DD
Sbjct: 144 LYVWVELGLQTINDNVAKKINRGYDLKVFDYAMTRLKERNIDVVVHS--ILGLPGESQDD 201

Query: 347 FRATMDLVDKIG 358
              T+D +   G
Sbjct: 202 MLKTIDYIAHSG 213


>gi|318041938|ref|ZP_07973894.1| oxygen independent coprophorphyrinogen III oxidase 1 [Synechococcus
           sp. CB0101]
          Length = 453

 Score = 38.5 bits (88), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 9/80 (11%)

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           +Q     + K++NR     + R+++  +R      +++ D I G P +T D FR T++LV
Sbjct: 175 IQDADPEVQKAVNRVVPVEQLRRVMGWLREAS-FASVNVDLICGLPLQTPDRFRTTLELV 233

Query: 355 -----DKIGYAQAFSFKYSP 369
                D+I     FSF Y P
Sbjct: 234 QELRPDRISL---FSFAYLP 250


>gi|197124374|ref|YP_002136325.1| radical SAM protein [Anaeromyxobacter sp. K]
 gi|196174223|gb|ACG75196.1| Radical SAM domain protein [Anaeromyxobacter sp. K]
          Length = 572

 Score = 38.5 bits (88), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 50/195 (25%), Positives = 88/195 (45%), Gaps = 20/195 (10%)

Query: 174 RGV-TAFLTIQEGCDKFCTFCVV-------PYTRGIEISRSLSQVVDEARKLIDNGVCEI 225
           RGV  A L    GC   C+FC V       P  R    +RS + V DE + L D     +
Sbjct: 175 RGVGIASLVASRGCYYDCSFCSVQTFYGEPPGPR--RRTRSPANVADEMQALHDGKGVRV 232

Query: 226 TLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM--SDCLIKAHGD 283
            +   +  A RG    G    F+   + L   +   R+ +  S   D   +D L +  G 
Sbjct: 233 FIFKDDDLATRGPRARGWIEAFA---HELEARRLGRRIAWRISCRVDDLDADLLRRLRG- 288

Query: 284 LDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGET 343
             V + +++L ++SGS++ L++ N+R T  + R+ +  +R +R  +A    F++  P  T
Sbjct: 289 --VGLTWVYLGIESGSEQGLRTCNKRFTVGDVRRGVALLRRLR--LAFDYGFMLLDPDST 344

Query: 344 DDDFRATMDLVDKIG 358
               R ++  ++ +G
Sbjct: 345 FASVRESVGFLEDLG 359


>gi|237734840|ref|ZP_04565321.1| coproporphyrinogen III oxidase [Mollicutes bacterium D7]
 gi|229382168|gb|EEO32259.1| coproporphyrinogen III oxidase [Coprobacillus sp. D7]
          Length = 374

 Score = 38.5 bits (88), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 35/58 (60%), Gaps = 1/58 (1%)

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFR 348
           L + V++ +D +LK +NR+HT+ +  +IID  R +  +  IS D + G P +T  D +
Sbjct: 123 LSIGVETFNDILLKKINRQHTSIQVERIIDYARKIGFN-NISIDLMYGLPNQTITDIK 179


>gi|251777874|ref|ZP_04820794.1| putative cobalamin-dependent enzyme [Clostridium botulinum E1 str.
           'BoNT E Beluga']
 gi|243082189|gb|EES48079.1| putative cobalamin-dependent enzyme [Clostridium botulinum E1 str.
           'BoNT E Beluga']
          Length = 554

 Score = 38.5 bits (88), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 40/178 (22%), Positives = 77/178 (43%), Gaps = 21/178 (11%)

Query: 185 GCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK 244
           GC   C +C+   + G+    S+ +V+ E +  ID  V  +  + +  N           
Sbjct: 182 GCPFNCKYCLSSTSHGVRF-LSIERVLKELQYFIDKKVRLVKFVDRTFN----------- 229

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMS-DCLIKAHGDLDVLMP----YLHLPVQSGS 299
           C      +S++  K L+     T    ++S D L +    L    P       + VQ+ +
Sbjct: 230 CNHK---FSMAIWKFLIESNTETKFHFEISADILKEEEIKLLSKAPKGRFQFEVGVQTTN 286

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
           D++L ++NR     + ++ +D + +++ +I    D I G PGE  + F  + + V KI
Sbjct: 287 DKVLNNINRFVNFEDIKEKVDELMAIK-NIQQHLDLIAGLPGEDYESFVNSFNDVYKI 343


>gi|91201888|emb|CAJ74948.1| conserved hypothetical protein [Candidatus Kuenenia
           stuttgartiensis]
          Length = 340

 Score = 38.1 bits (87), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 4/70 (5%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD-IAISSDFIVGFPGETDDDFR 348
           ++   +QS  +  LK +NR H   +Y+  ++ I   +   I I    I+G P ETDDD  
Sbjct: 156 WIEYGLQSIHEETLKRINRGH---DYKSFVEAINLTKKTCINICVHVILGLPFETDDDMM 212

Query: 349 ATMDLVDKIG 358
            T D V ++G
Sbjct: 213 KTADAVAEMG 222


>gi|300856531|ref|YP_003781515.1| hypothetical protein CLJU_c33680 [Clostridium ljungdahlii DSM
           13528]
 gi|300436646|gb|ADK16413.1| conserved hypothetical protein [Clostridium ljungdahlii DSM 13528]
          Length = 476

 Score = 38.1 bits (87), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 1/63 (1%)

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
           Q+ +D  LK + R H+  E R+     R    D  I+ D IVG PGE  ++   T D ++
Sbjct: 274 QTMNDSTLKFIGRNHSVNEVREKFHMARKYGFD-NINMDLIVGLPGEGIEEVNKTCDEIE 332

Query: 356 KIG 358
           K+G
Sbjct: 333 KLG 335


>gi|158320265|ref|YP_001512772.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Alkaliphilus oremlandii OhILAs]
 gi|158140464|gb|ABW18776.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Alkaliphilus oremlandii OhILAs]
          Length = 379

 Score = 38.1 bits (87), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 21/91 (23%), Positives = 47/91 (51%), Gaps = 1/91 (1%)

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
           L + +QS  + +LK++ R H+  EY + ++  R       I++D +   PG+T+ D++ +
Sbjct: 117 LSMGLQSCQNHLLKTLGRIHSFEEYVKNLEDARKA-GFTNINTDLMFSLPGQTERDWQES 175

Query: 351 MDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           ++ +  +G     ++      GTP  + +E 
Sbjct: 176 LEKIVSLGIPHISAYSLIVEEGTPFFSWVEN 206


>gi|224826494|ref|ZP_03699595.1| Protein of unknown function UPF0004 [Lutiella nitroferrum 2002]
 gi|224601095|gb|EEG07277.1| Protein of unknown function UPF0004 [Lutiella nitroferrum 2002]
          Length = 66

 Score = 38.1 bits (87), Expect = 2.8,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 1/62 (1%)

Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
          P+  FV S GC   + DS ++     ++GY+   S DDADL+V+NTC   + A  +    
Sbjct: 6  PKVGFV-SLGCPKALVDSEQILTRLRAEGYDISPSYDDADLVVVNTCGFIDSAVAESLDA 64

Query: 84 LG 85
          +G
Sbjct: 65 IG 66


>gi|15894308|ref|NP_347657.1| Fe-S oxidoreductase [Clostridium acetobutylicum ATCC 824]
 gi|15023931|gb|AAK78997.1|AE007617_9 Predicted Fe-S oxidoreductases [Clostridium acetobutylicum ATCC
           824]
 gi|325508436|gb|ADZ20072.1| Fe-S oxidoreductase [Clostridium acetobutylicum EA 2018]
          Length = 548

 Score = 38.1 bits (87), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 54/267 (20%), Positives = 117/267 (43%), Gaps = 27/267 (10%)

Query: 163 LSIVDGGYNRKRGVTAFLTIQE---GCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLID 219
           +++++  YN +  ++  +   E   GC   C +C+    RG+       +V  E + L D
Sbjct: 161 MNLLEFPYNEEDDLSNKIIYYEASRGCPFNCKYCLSSTIRGVRFLNP-DRVKRELKFLAD 219

Query: 220 NGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL-RYTTSHPRDMSDCLI 278
             V  +  + +  NA              +  +++   K L+ L   T  H    +D + 
Sbjct: 220 KKVKIVKFVDRTFNA--------------NPKFAMEIWKYLMELDTETVFHFEITADIVT 265

Query: 279 KAHGDLDVLMP----YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSD 334
           +   +L    P       + VQS ++ +LK++NR     + ++I+ ++   + +I    D
Sbjct: 266 EDEIELLKNAPKGRFQFEVGVQSTNNEVLKNVNRYIEFKDIKEIVMKLEEGK-NINQHLD 324

Query: 335 FIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCL 394
            IVG PGE  + F+ + + V  IG  +     +   L   GS+M E+ ++   +      
Sbjct: 325 LIVGLPGEDFNSFKNSFNDVYSIG-PEKLQIGFLKLL--KGSSMREEAEKWGMSYSPYHP 381

Query: 395 QKKLREQQVSFNDACVGQIIEVLIEKH 421
            + LR + +SF +  + + ++ +++K+
Sbjct: 382 YEILRTKDISFEEISILKRVDSVVDKY 408


>gi|187932373|ref|YP_001884337.1| radical SAM protein [Clostridium botulinum B str. Eklund 17B]
 gi|187720526|gb|ACD21747.1| radical SAM protein, family [Clostridium botulinum B str. Eklund
           17B]
          Length = 312

 Score = 38.1 bits (87), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 2/72 (2%)

Query: 287 LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDD 346
           L  ++ L +Q+ +D + K +NR +    +   + R++    D+ + S  I+G PGE+ DD
Sbjct: 144 LYVWVELGLQTINDDVAKKINRGYDLKVFDNAMTRLKERNIDVVVHS--ILGLPGESQDD 201

Query: 347 FRATMDLVDKIG 358
              T+D +   G
Sbjct: 202 MLKTIDYIAHSG 213


>gi|89895882|ref|YP_519369.1| hypothetical protein DSY3136 [Desulfitobacterium hafniense Y51]
 gi|89335330|dbj|BAE84925.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 381

 Score = 38.1 bits (87), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 1/60 (1%)

Query: 293 LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352
           L VQS +D +L+ + R H   E R+ +  IR       ++ D + G PG+T  D+R TM+
Sbjct: 122 LGVQSFNDDLLRQIGRIHRTEEVREGVQLIREAGFK-NLNLDLMFGLPGQTQADWRDTME 180


>gi|294812565|ref|ZP_06771208.1| Coproporphyrinogen III oxidase [Streptomyces clavuligerus ATCC
           27064]
 gi|326440982|ref|ZP_08215716.1| coproporphyrinogen III oxidase [Streptomyces clavuligerus ATCC
           27064]
 gi|294325164|gb|EFG06807.1| Coproporphyrinogen III oxidase [Streptomyces clavuligerus ATCC
           27064]
          Length = 410

 Score = 38.1 bits (87), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 6/116 (5%)

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           +QS    +LK ++R HT       +   R+      ++ D I G PGE+D+D+RA++   
Sbjct: 157 MQSARRHVLKVLDRTHTPGRPEACVAEARAAGFG-HVNLDLIYGTPGESDEDWRASLTAA 215

Query: 355 DKIGYAQAFSFKYSPRLGTPGSNMLEQ-----VDENVKAERLLCLQKKLREQQVSF 405
              G     ++      GT  +  + +      D++V A+R L  +  L E   S+
Sbjct: 216 VGAGPDHISAYALIVEEGTQLARRIRRGEVPMTDDDVHADRYLIAESVLAEAGYSW 271


>gi|254392599|ref|ZP_05007776.1| coproporphyrinogen III oxidase [Streptomyces clavuligerus ATCC
           27064]
 gi|197706263|gb|EDY52075.1| coproporphyrinogen III oxidase [Streptomyces clavuligerus ATCC
           27064]
          Length = 416

 Score = 38.1 bits (87), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 6/116 (5%)

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           +QS    +LK ++R HT       +   R+      ++ D I G PGE+D+D+RA++   
Sbjct: 163 MQSARRHVLKVLDRTHTPGRPEACVAEARAAGFG-HVNLDLIYGTPGESDEDWRASLTAA 221

Query: 355 DKIGYAQAFSFKYSPRLGTPGSNMLEQ-----VDENVKAERLLCLQKKLREQQVSF 405
              G     ++      GT  +  + +      D++V A+R L  +  L E   S+
Sbjct: 222 VGAGPDHISAYALIVEEGTQLARRIRRGEVPMTDDDVHADRYLIAESVLAEAGYSW 277


>gi|85860874|ref|YP_463076.1| radical SAM superfamily protein [Syntrophus aciditrophicus SB]
 gi|85723965|gb|ABC78908.1| radical SAM superfamily protein [Syntrophus aciditrophicus SB]
          Length = 335

 Score = 38.1 bits (87), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 2/61 (3%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +L   +QS  D+ L  +NR HTA ++   +   R+V  ++ I +  I+G PGE  +D   
Sbjct: 167 WLEFGLQSIHDKTLLRINREHTAAQFLDAV--ARAVDENLLICTHIILGLPGENHEDVMQ 224

Query: 350 T 350
           T
Sbjct: 225 T 225


>gi|196230554|ref|ZP_03129416.1| Coproporphyrinogen dehydrogenase [Chthoniobacter flavus Ellin428]
 gi|196225484|gb|EDY19992.1| Coproporphyrinogen dehydrogenase [Chthoniobacter flavus Ellin428]
          Length = 478

 Score = 38.1 bits (87), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 33/130 (25%), Positives = 59/130 (45%), Gaps = 9/130 (6%)

Query: 275 DCLIKAHGDLDVLMPY----LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330
           D L  AH  +DVL+ +    + + +QS  D +L  + R+H          ++ S    + 
Sbjct: 155 DSLTDAH--IDVLLRHQIGRVSMGIQSTHDEVLDHIRRKHAGEVALATCAKLVSC--GLM 210

Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER 390
           ++ D I G PG+T++ FR  + LV   G     ++       TP +  L + DE +   R
Sbjct: 211 VNVDLIYGLPGQTEEHFRRDLQLVSASGAHSITAYNLRVNERTPVAQKLGE-DERLGPHR 269

Query: 391 LLCLQKKLRE 400
           L+  +  +R 
Sbjct: 270 LIRWRAFVRH 279


>gi|315654881|ref|ZP_07907786.1| coproporphyrinogen dehydrogenase [Mobiluncus curtisii ATCC 51333]
 gi|315490842|gb|EFU80462.1| coproporphyrinogen dehydrogenase [Mobiluncus curtisii ATCC 51333]
          Length = 469

 Score = 38.1 bits (87), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 4/90 (4%)

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP-DIAISSDFIVGFPGETDDDFRATMDL 353
           +QS    +L ++NR H   + + ++  +++     + +S D I G PGET  D+RA++D 
Sbjct: 160 MQSAVPAVLATLNRTH---QQKHLVAGVQAAHSRGLEVSVDLIYGTPGETLADWRASLDA 216

Query: 354 VDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
             ++G      +      GT     L Q D
Sbjct: 217 ALELGVDHVSCYALVIEPGTALGRALAQGD 246


>gi|294668830|ref|ZP_06733923.1| lipoyl synthase [Neisseria elongata subsp. glycolytica ATCC 29315]
 gi|291309347|gb|EFE50590.1| lipoyl synthase [Neisseria elongata subsp. glycolytica ATCC 29315]
          Length = 322

 Score = 38.1 bits (87), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 42/188 (22%), Positives = 74/188 (39%), Gaps = 28/188 (14%)

Query: 174 RGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVN 233
           +G   F+ + + C + C FC V + R   +     Q +  + + +      IT +     
Sbjct: 82  KGTATFMIMGDMCTRRCPFCAVGHGRPNPLDPEEPQNLANSVRAMKLRYVVITSVD---- 137

Query: 234 AWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIK--AHGDLDVL---- 287
             R    DG    F+D + ++ E     ++       R   D  +K  A    DV+    
Sbjct: 138 --RDDLRDGGAQHFADCITAIREASPTTKIEILVPDFRGRLDIALKILAQTPPDVMNHNL 195

Query: 288 --MPYLHLPVQSGSDRILKSMNRRHTAYEYR-QIIDRIRSVRPDIAISSDFIVGFPGETD 344
              P L+   + G+D            Y++  +++ R + + P I   S  +VG  GETD
Sbjct: 196 ETHPRLYKQARPGAD------------YKHSLELLRRYKEMMPHIPTKSGIMVGL-GETD 242

Query: 345 DDFRATMD 352
           D+ R  MD
Sbjct: 243 DEIREIMD 250


>gi|262066487|ref|ZP_06026099.1| BchE/P-methylase family protein [Fusobacterium periodonticum ATCC
           33693]
 gi|291379791|gb|EFE87309.1| BchE/P-methylase family protein [Fusobacterium periodonticum ATCC
           33693]
          Length = 447

 Score = 38.1 bits (87), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 45/180 (25%), Positives = 82/180 (45%), Gaps = 24/180 (13%)

Query: 40  DSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGG 99
           +SL  E   + +  E++    +AD+IV+ +       +++ Y++    R       K G 
Sbjct: 39  ESLNAEAKIYDETIEKIPLNLEADIIVMTSI---TGTSQRCYAYADYFR-------KRG- 87

Query: 100 DLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG--KR--VVDTDYS 155
            + VV+ G       EE  + + +V V    QT+   P++L   + G  KR  + D +++
Sbjct: 88  -IKVVLGGVHPSLMPEEASQHADVVMVGFAEQTF---PQMLLDFKSGNLKRMYIQDKEFN 143

Query: 156 VEDK-FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDE 213
           +E+K   R  ++      K   TA + +  GC   CTFC  P   G +I  R + +V+ E
Sbjct: 144 LENKVIPRRELLQ---KDKYITTATVEVVRGCSLPCTFCAYPTAFGRKIYKRPIKEVLSE 200


>gi|297199599|ref|ZP_06916996.1| coproporphyrinogen III oxidase [Streptomyces sviceus ATCC 29083]
 gi|197713473|gb|EDY57507.1| coproporphyrinogen III oxidase [Streptomyces sviceus ATCC 29083]
          Length = 420

 Score = 38.1 bits (87), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 1/58 (1%)

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352
           +QS    +LK ++R HT       +   R+      ++ D I G PGE+DDD+RA+++
Sbjct: 167 MQSARQHVLKVLDRTHTPGRPEACVAEARAAG-FAHVNLDLIYGTPGESDDDWRASLE 223


>gi|116247590|gb|ABJ90160.1| MoeK5 [Streptomyces ghanaensis ATCC 14672]
          Length = 407

 Score = 38.1 bits (87), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 49/204 (24%), Positives = 79/204 (38%), Gaps = 26/204 (12%)

Query: 178 AFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWR 236
           A +    GC   C+FC         + RS   VV E  +L +  GV EI          R
Sbjct: 161 ATMISSRGCPFKCSFCFKQAVDKKSMYRSPEDVVGEMTELKERWGVKEIMFYDDVFTLHR 220

Query: 237 GKGLDGEKCTFSDLLYSLSEIKGLV-----RLRYTTSHPRDM-SDCLIKAHGDLDVLMPY 290
           G+               + EI GL+     ++R+      D+  + L++A      +   
Sbjct: 221 GR---------------VREICGLIGETGLKVRWEAPTRVDLVPEPLLEAMAGAGCVR-- 263

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
           L   ++ G   IL+ M +     +  + +         I     FIVG+ GET + FR T
Sbjct: 264 LRFGIEHGDSEILERMRKESDIQKIEKAVTSAHEA--GIKGFGYFIVGWLGETREQFRRT 321

Query: 351 MDLVDKIGYAQAFSFKYSPRLGTP 374
           +DL  ++    A  +  +P  GTP
Sbjct: 322 VDLACRLPLDYASFYTATPLPGTP 345


>gi|257091982|ref|YP_003165623.1| Radical SAM domain-containing protein [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257044506|gb|ACV33694.1| Radical SAM domain protein [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
          Length = 547

 Score = 38.1 bits (87), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 56/239 (23%), Positives = 88/239 (36%), Gaps = 31/239 (12%)

Query: 148 RVVDTDYSVEDKFERLSIVDGGYN-------RKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           R++D D      +E+L+     Y+       ++ G T  +    GC   C+FC       
Sbjct: 168 RILDLDELPFPAYEKLAGFPHAYHLPLFAYDKRYGAT--MITSRGCPYTCSFCDRTVFER 225

Query: 201 IEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           +  + S     +  R L D  GV  I        A R +    E C    L+     +  
Sbjct: 226 LYKTNSAQYTYEHMRHLRDRFGVYHINFYDDLFTAHRKRVT--ELCQL--LIDKPLGMNF 281

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA----YEY 315
              +R  T H  D    ++K  G L V M         G +     M  RH A     E 
Sbjct: 282 NCAIR--TGHTSDEMLGMLKKAGALMVSM---------GIESADPGMMERHKAGVTLPEV 330

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
           ++ +++I +    +     FI G PGET +  R T D +  +   +    K+SP  G P
Sbjct: 331 KKTVEQIHAA--GLRAKGLFIFGLPGETPETLRHTSDFILSLDLDEMNMTKFSPMYGAP 387


>gi|282849924|ref|ZP_06259307.1| radical SAM domain protein [Veillonella parvula ATCC 17745]
 gi|282580361|gb|EFB85761.1| radical SAM domain protein [Veillonella parvula ATCC 17745]
          Length = 575

 Score = 38.1 bits (87), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 68/302 (22%), Positives = 123/302 (40%), Gaps = 59/302 (19%)

Query: 130 PQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKF 189
           P+T  R  E+L     G+ VV T+Y+                 + G    + +  GC + 
Sbjct: 221 PKTIKRHFEMLTSG--GETVVATNYT-----------------EFGAMYIIEVARGCGRH 261

Query: 190 CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSD 249
           C FC+  Y   +   R L         ++  GV     LG+ V      GL G     SD
Sbjct: 262 CRFCMAGYCFRVPRVRPLD--------ILKEGVERAEKLGKKV------GLMG--AAISD 305

Query: 250 LLYSLSEIKGLVR---LRYTTSHPRDMSDCLIKA--HGDLDVLMPYLHLPVQSGSDRILK 304
               + E+   +R   +RY+ +  R  +D L +A   G  D     + +  ++GS+R+ +
Sbjct: 306 YP-EVDELVNYIRSKDMRYSCASLR--ADSLTQAVVDGLADSGQKTITIAPETGSERLRR 362

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL-------VDKI 357
            +N +  + E+ Q    + +      +    ++G P ETD+D  A + L       ++K+
Sbjct: 363 VIN-KGISEEHLQNAATLSAKSGIQHMRLYIMIGLPTETDEDIEAIVGLAERTQAHMEKV 421

Query: 358 GYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVL 417
           G     +   +P +  P +       +N KA     ++KKL+  + +       + IEVL
Sbjct: 422 GCKGRLTLSINPFIPKPFTPFQWMAMDNQKA-----VEKKLQYIKKALQK---NRRIEVL 473

Query: 418 IE 419
           +E
Sbjct: 474 VE 475


>gi|52549553|gb|AAU83402.1| Fe-S oxidoreductase [uncultured archaeon GZfos27G5]
          Length = 554

 Score = 38.1 bits (87), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 38/195 (19%), Positives = 87/195 (44%), Gaps = 15/195 (7%)

Query: 176 VTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW 235
           +   + I  GC + C+FC  P  + +   +S+  +  + +  I+ G   I+L  ++V  +
Sbjct: 222 IHGLVEISRGCGRGCSFCT-PSMQRLRF-QSVEHIAKDVKTNIEAGQRSISLHSEDVLRY 279

Query: 236 RGKGLDGEKCTFSDLLYSLSEIKGLVRLRY------TTSHPRDMSDCLIKA-HGDLDVLM 288
             +G+  ++    +L   ++ I+G+ R+        T  H  D+   + +  +  LD   
Sbjct: 280 GARGIAPDEERVMNLFRRVASIEGIARIGASHIALATVYHNPDLLKAVSETCYSMLDQNW 339

Query: 289 PYLHLPVQSGSDRILKSMNR----RHTAYEYRQIIDRIRSVRPDIAI--SSDFIVGFPGE 342
                 +++GS R++    R         ++++I+ +   +  D     ++  I G PGE
Sbjct: 340 LGAQTGIETGSARLIAKHMRGKALPSPPEKWQEIVTQAFGLLDDNNWFNAATMINGLPGE 399

Query: 343 TDDDFRATMDLVDKI 357
             DD   +++LV+ +
Sbjct: 400 NTDDVVESIELVEDL 414


>gi|257066667|ref|YP_003152923.1| oxygen-independent coproporphyrinogen III oxidase [Anaerococcus
           prevotii DSM 20548]
 gi|256798547|gb|ACV29202.1| oxygen-independent coproporphyrinogen III oxidase [Anaerococcus
           prevotii DSM 20548]
          Length = 372

 Score = 38.1 bits (87), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 44/180 (24%), Positives = 82/180 (45%), Gaps = 20/180 (11%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVN-AWRGKGLDGEK 244
           C+K C +C      G+E        +D     IDN + EI L  +N++ A     + G  
Sbjct: 13  CEKKCYYCDFAAFEGLE------AWID---PYIDNLIKEIRLYKENMDLAIDTIYIGGGT 63

Query: 245 CTFSDLLYS---LSEIKGL---VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
            ++ D LY    L E++G    ++      +P  +    ++A+ DL V    + L VQS 
Sbjct: 64  PSYIDPLYIEKILREVRGFDTDIKEFSLECNPNSIDSDKLQAYKDLGVTR--ISLGVQSF 121

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
            D++L+++ R H      + I  I+S   D  +S D ++  PG+     +  +++V ++ 
Sbjct: 122 DDKVLRNIGRNHNKEIAIRDIKLIKSFGFD--LSFDLMLNLPGQDLASVKKDLEMVKRLS 179


>gi|68535671|ref|YP_250376.1| coproporphyrinogen III oxidase [Corynebacterium jeikeium K411]
 gi|68263270|emb|CAI36758.1| oxygen-independent coproporphyrinogen III oxidase [Corynebacterium
           jeikeium K411]
          Length = 409

 Score = 38.1 bits (87), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 36/126 (28%), Positives = 57/126 (45%), Gaps = 18/126 (14%)

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA-ISSDFIVGFPGETDDDFRA 349
           + L +QS    +LK + R+HT    R I     + R     I+ D I G P ETDDD R 
Sbjct: 127 ISLGMQSAMGHVLKVLERQHTPG--RPIEATREAKRAGFEHINLDVIYGTPTETDDDLRR 184

Query: 350 TMDLV--DKIGYAQAFSFKYSPRLGTPGSNMLEQV--------DENVKAERLLCLQKKLR 399
           T+D V    + +  A+S      +   G+ M  +V        DE+  A+R   +  +LR
Sbjct: 185 TLDAVLEADVDHVSAYSL-----IVEDGTAMARKVRRGELPAPDEDTLADRYDAIDARLR 239

Query: 400 EQQVSF 405
           +   ++
Sbjct: 240 DAGFNW 245


>gi|163845807|ref|YP_001633851.1| oxygen-independent coproporphyrinogen III oxidase [Chloroflexus
           aurantiacus J-10-fl]
 gi|222523517|ref|YP_002567987.1| oxygen-independent coproporphyrinogen III oxidase [Chloroflexus sp.
           Y-400-fl]
 gi|163667096|gb|ABY33462.1| oxygen-independent coproporphyrinogen III oxidase [Chloroflexus
           aurantiacus J-10-fl]
 gi|222447396|gb|ACM51662.1| oxygen-independent coproporphyrinogen III oxidase [Chloroflexus sp.
           Y-400-fl]
          Length = 393

 Score = 38.1 bits (87), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 1/61 (1%)

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
           L + VQS  D  L+ + R HTA E     +  R+V  + +I+ DFI G PG+  + +RAT
Sbjct: 123 LSMGVQSLHDPTLRMLGRIHTAAEAYASFNDARAVGFE-SINLDFIFGLPGQDIEQWRAT 181

Query: 351 M 351
           +
Sbjct: 182 L 182


>gi|317122992|ref|YP_004102995.1| oxygen-independent coproporphyrinogen III oxidase [Thermaerobacter
           marianensis DSM 12885]
 gi|315592972|gb|ADU52268.1| oxygen-independent coproporphyrinogen III oxidase [Thermaerobacter
           marianensis DSM 12885]
          Length = 431

 Score = 38.1 bits (87), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 1/90 (1%)

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
           L L +Q+  D +L++M R HT  ++     R+R    D  ++ D I G PG+T D + A+
Sbjct: 167 LSLGLQAVQDELLRAMGRDHTWADFCATYRRVRQAGFD-NVNIDLIFGLPGQTLDQWEAS 225

Query: 351 MDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           +  V  +       +      GTP     E
Sbjct: 226 LRAVVDLDPEHVSCYGLELHPGTPFHRWWE 255


>gi|307330489|ref|ZP_07609631.1| oxygen-independent coproporphyrinogen III oxidase [Streptomyces
           violaceusniger Tu 4113]
 gi|306883824|gb|EFN14868.1| oxygen-independent coproporphyrinogen III oxidase [Streptomyces
           violaceusniger Tu 4113]
          Length = 400

 Score = 38.1 bits (87), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 28/116 (24%), Positives = 53/116 (45%), Gaps = 6/116 (5%)

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           +QS    +LK ++R HT       +   R+   D  ++ D I G PGE+D D+RA+++  
Sbjct: 147 MQSARQPVLKVLDRTHTPGRPEACVAEARAAGFD-HVNLDLIYGTPGESDADWRASLEAA 205

Query: 355 DKIGYAQAFSFKYSPRLGTPGSNMLEQ-----VDENVKAERLLCLQKKLREQQVSF 405
              G     ++      GT  +  + +      D++V A+R L  ++ L     ++
Sbjct: 206 LGAGPDHVSAYALIVEEGTRLARRIRRGEVPMTDDDVHADRYLIAEEILSAAGFTW 261


>gi|146295611|ref|YP_001179382.1| cobalamin B12-binding domain-containing protein
           [Caldicellulosiruptor saccharolyticus DSM 8903]
 gi|145409187|gb|ABP66191.1| cobalamin B12-binding domain protein [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 483

 Score = 38.1 bits (87), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 2/67 (2%)

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
           +H+ V+SG D +LKS+ +R T  +  + I  + S    I     FI+G P +T +    T
Sbjct: 302 VHIGVESGDDEVLKSIEKRITVEKVLKAITLLAS--KGIRAECSFIIGHPSDTLESIERT 359

Query: 351 MDLVDKI 357
           + L DK+
Sbjct: 360 LILADKL 366


>gi|307244326|ref|ZP_07526440.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Peptostreptococcus stomatis DSM 17678]
 gi|306492292|gb|EFM64331.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Peptostreptococcus stomatis DSM 17678]
          Length = 382

 Score = 37.7 bits (86), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 50/104 (48%), Gaps = 6/104 (5%)

Query: 277 LIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFI 336
           L+KA G     +  L + +Q+  D +LK + R HT  E+ +     RSV  D  I+ D +
Sbjct: 108 LMKAGG-----LNRLSIGLQASQDHLLKFLERIHTYEEFLESYRLARSVGFD-NINIDLM 161

Query: 337 VGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
             F G+T +D+R T++ V  +      ++      GT   NM E
Sbjct: 162 FAFQGQTLEDWRETLERVVSLEPDHISAYSLIIEEGTKFFNMYE 205


>gi|329960204|ref|ZP_08298646.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Bacteroides fluxus YIT 12057]
 gi|328532877|gb|EGF59654.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Bacteroides fluxus YIT 12057]
          Length = 342

 Score = 37.7 bits (86), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 52/109 (47%), Gaps = 11/109 (10%)

Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTT--SHPRDMSDCLIKAHGDLDVLMPY--LHLPV 295
           L GE   FS +  ++ +  GL      T  ++P D    L + +  +   +P+  + + +
Sbjct: 30  LSGED--FSSIFRTIEDTYGLEHAEEITLEANPDD----LTEEYAAMLQALPFNRISMGI 83

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETD 344
           Q+  D  LK +NRRH + +    ++R R       IS D I G PGETD
Sbjct: 84  QTFDDATLKLLNRRHNSAQAITAVERCRQAGFR-NISIDLIYGLPGETD 131


>gi|302389529|ref|YP_003825350.1| Radical SAM domain protein [Thermosediminibacter oceani DSM 16646]
 gi|302200157|gb|ADL07727.1| Radical SAM domain protein [Thermosediminibacter oceani DSM 16646]
          Length = 566

 Score = 37.7 bits (86), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 40/181 (22%), Positives = 73/181 (40%), Gaps = 19/181 (10%)

Query: 179 FLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK 238
            + I  GC + C FC+  Y   +   R+L +++D A      G   + L+G  V+ +   
Sbjct: 240 LIEISRGCGRNCRFCMAGYCYRVPRVRALEKIIDRAEFASKYGK-RVGLVGAAVSDYPRI 298

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
               E+ T   + +S+S       LR  T     +    +  H  L +         ++G
Sbjct: 299 DELSEELTKRGIKFSVSS------LRADTLREPLLRGLSLSGHKTLTIA-------PEAG 345

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRP--DIAISSDFIVGFPGETDDDFRATMDLVDK 356
           S R+   +N+  T      ++D I   +      I   +I+G P ET DD    +D + +
Sbjct: 346 SQRLRNVINKGLTE---DHVLDSINMAQKFGIKNIKLYYIIGLPTETSDDIEEMIDFLTR 402

Query: 357 I 357
           +
Sbjct: 403 V 403


>gi|329577058|gb|EGG58531.1| radical SAM domain protein [Enterococcus faecalis TX1467]
          Length = 194

 Score = 37.7 bits (86), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 7/77 (9%)

Query: 291 LHLPVQSGSDRILKSMNRRHTA---YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDF 347
           L + VQ+  DR+LK + R+HTA   YE  + +++         +S D I   PG+T   F
Sbjct: 117 LSMGVQTFDDRLLKKIGRKHTAADVYETMKFLEKENFTN----VSIDLIYALPGQTLVKF 172

Query: 348 RATMDLVDKIGYAQAFS 364
               D    IG A  F+
Sbjct: 173 SRYFDKSLSIGLAALFA 189


>gi|269125534|ref|YP_003298904.1| Radical SAM domain-containing protein [Thermomonospora curvata DSM
           43183]
 gi|268310492|gb|ACY96866.1| Radical SAM domain protein [Thermomonospora curvata DSM 43183]
          Length = 451

 Score = 37.7 bits (86), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 71/173 (41%), Gaps = 15/173 (8%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK 238
           + I  GC   C FC  P+    +   RS+  V     +++ +G  ++  +     ++   
Sbjct: 174 IEITRGCVYACRFCQTPFMFSAKFRHRSVENVKRHVEQMVAHGRRDVRFITPTSLSYGSG 233

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSD--------CLIKAHGDLDVLMPY 290
             +       +LL +   + G     +  S P ++           LIK +   D L+  
Sbjct: 234 DENVNLEAVEELLAACKSVVGKQGRVFFGSFPSEVRPEHVSVRALRLIKRYCANDNLI-- 291

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGET 343
             +  QSGS R+L++  R H   E R  + RI  V+    I+ D I G PGET
Sbjct: 292 --IGAQSGSARVLEAAKRGHGVQEVRDAV-RI-GVQEGFRINVDMIFGMPGET 340


>gi|167755872|ref|ZP_02427999.1| hypothetical protein CLORAM_01389 [Clostridium ramosum DSM 1402]
 gi|167704811|gb|EDS19390.1| hypothetical protein CLORAM_01389 [Clostridium ramosum DSM 1402]
          Length = 364

 Score = 37.7 bits (86), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 1/58 (1%)

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFR 348
           L + V++ +D +LK +NR+HT  +  +IID  R +  +  IS D + G P +T  D +
Sbjct: 113 LSIGVETFNDILLKKINRQHTTIQVERIIDYARKIGFN-NISIDLMYGLPNQTITDIK 169


>gi|194334232|ref|YP_002016092.1| radical SAM domain-containing protein [Prosthecochloris aestuarii
           DSM 271]
 gi|194312050|gb|ACF46445.1| Radical SAM domain protein [Prosthecochloris aestuarii DSM 271]
          Length = 520

 Score = 37.7 bits (86), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 74/349 (21%), Positives = 142/349 (40%), Gaps = 59/349 (16%)

Query: 62  ADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRS 121
           AD++ ++   +++++A +V      I   K + +K      VV  G +  ++ E+     
Sbjct: 66  ADMVFVSAMAVQQRSAREV------IDQCKRAGVK------VVAGGPLFTSDHEQF---- 109

Query: 122 PIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGG-YN----RKRGV 176
           P V+  V  +    L + LE    G  ++   Y+  D F  +S      +N    RK   
Sbjct: 110 PNVDHFVLNEAELTLSQFLEDLDRG--ILQRVYAA-DAFADISTTPAPQWNILEMRKYAS 166

Query: 177 TAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDNGVCEITLLGQNVNAW 235
            A +    GC   C FC V    G +I +++  Q++DE   L + G             W
Sbjct: 167 MA-IQFSRGCPYHCDFCNVTALFGHKIRTKTSQQIIDELDGLREAG-------------W 212

Query: 236 RGKGLDGEKCTFSDLLYSLSEI-KGLVRLRYTTS-HPRDMSDCLIKAHGDLDVL------ 287
           +G     +    +   Y   E+   L+  R + S   R  ++C I    D +++      
Sbjct: 213 KGSVFFVDDNFIAHKSYLKKELLPKLIEWRRSNSVANRYYTECSINLADDSELMDLMVAA 272

Query: 288 -MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR-PDIAISSDFIVGFPGETDD 345
               + + +++  D  L++  ++H     R ++D +R ++   + +   FIVGF  +T  
Sbjct: 273 GFNQVFIGIETPDDLALQACGKQHNTS--RNLLDNVRRIQHAGLEVMGGFIVGFDSDTPS 330

Query: 346 DFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAE-RLLC 393
            F   ++ +   G   A           PG+ + E+    +K+E RLLC
Sbjct: 331 IFSKQIEFIQNSGIVTAMVGLLQ---ALPGTGLYER----MKSEGRLLC 372


>gi|15896484|ref|NP_349833.1| hypothetical protein CA_C3238 [Clostridium acetobutylicum ATCC 824]
 gi|15026311|gb|AAK81173.1|AE007819_9 Ucharacterized Fe-S oxidoreductase [Clostridium acetobutylicum ATCC
           824]
          Length = 324

 Score = 37.7 bits (86), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 17/65 (26%), Positives = 36/65 (55%), Gaps = 2/65 (3%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           ++ L +Q+ +D++ K +NR +    +   + ++R  + D+ + +  I G PGE   D  +
Sbjct: 158 WVELGLQTANDKVAKVINRGYDTIVFDDAVKKLRERKIDVVVHT--IFGLPGEKPKDMLS 215

Query: 350 TMDLV 354
           T+D V
Sbjct: 216 TIDYV 220


>gi|25028747|ref|NP_738801.1| coproporphyrinogen III oxidase [Corynebacterium efficiens YS-314]
 gi|23494033|dbj|BAC19001.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Corynebacterium efficiens YS-314]
          Length = 401

 Score = 37.7 bits (86), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 58/125 (46%), Gaps = 16/125 (12%)

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
           + L +QS S  +L+ ++RRHT           R+   D  ++ D I G P ETD+D R T
Sbjct: 139 ISLGMQSASSSVLRVLDRRHTPGRPVAAAKEARAAGFD-HVNLDMIYGTPTETDEDVRKT 197

Query: 351 MDLV--DKIGYAQAFSFKYSPRLGTPGSNMLEQV--------DENVKAERLLCLQKKLRE 400
           +D V    + +  A+S      +   G+ M  +V        DE+V A+R   + ++LR 
Sbjct: 198 LDAVLEADVDHVSAYSL-----IVEDGTAMARKVRRGELPAPDEDVYADRYEMIDQRLRA 252

Query: 401 QQVSF 405
               +
Sbjct: 253 NGFDW 257


>gi|325510642|gb|ADZ22278.1| Ucharacterized Fe-S oxidoreductase [Clostridium acetobutylicum EA
           2018]
          Length = 321

 Score = 37.7 bits (86), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 17/65 (26%), Positives = 36/65 (55%), Gaps = 2/65 (3%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           ++ L +Q+ +D++ K +NR +    +   + ++R  + D+ + +  I G PGE   D  +
Sbjct: 155 WVELGLQTANDKVAKVINRGYDTIVFDDAVKKLRERKIDVVVHT--IFGLPGEKPKDMLS 212

Query: 350 TMDLV 354
           T+D V
Sbjct: 213 TIDYV 217


>gi|259507808|ref|ZP_05750708.1| oxygen-independent coproporphyrinogen III oxidase [Corynebacterium
           efficiens YS-314]
 gi|259164601|gb|EEW49155.1| oxygen-independent coproporphyrinogen III oxidase [Corynebacterium
           efficiens YS-314]
          Length = 398

 Score = 37.7 bits (86), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 58/125 (46%), Gaps = 16/125 (12%)

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
           + L +QS S  +L+ ++RRHT           R+   D  ++ D I G P ETD+D R T
Sbjct: 136 ISLGMQSASSSVLRVLDRRHTPGRPVAAAKEARAAGFD-HVNLDMIYGTPTETDEDVRKT 194

Query: 351 MDLV--DKIGYAQAFSFKYSPRLGTPGSNMLEQV--------DENVKAERLLCLQKKLRE 400
           +D V    + +  A+S      +   G+ M  +V        DE+V A+R   + ++LR 
Sbjct: 195 LDAVLEADVDHVSAYSL-----IVEDGTAMARKVRRGELPAPDEDVYADRYEMIDQRLRA 249

Query: 401 QQVSF 405
               +
Sbjct: 250 NGFDW 254


>gi|332981294|ref|YP_004462735.1| oxygen-independent coproporphyrinogen III oxidase [Mahella
           australiensis 50-1 BON]
 gi|332698972|gb|AEE95913.1| oxygen-independent coproporphyrinogen III oxidase [Mahella
           australiensis 50-1 BON]
          Length = 379

 Score = 37.7 bits (86), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 29/107 (27%), Positives = 50/107 (46%), Gaps = 8/107 (7%)

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
           L + +Q+  D +LK++ R HT+ E+    +  R V  D  I+ D + G P +T   +  T
Sbjct: 118 LSIGLQAWQDELLKAIGRIHTSAEFVNSYNEAREVGFD-NINVDLMFGLPQQTIGQWIRT 176

Query: 351 MDLVDKIGYAQAFSFKYSPRLGTPGSNM-----LEQVDENVKAERLL 392
           +  V  +G      +      GTP   M     ++ +DEN   +RL+
Sbjct: 177 LQAVVSLGPEHISCYDLQIEEGTPMHKMVVGGDIKPLDEN--TDRLM 221


>gi|71909808|ref|YP_287395.1| cobalamin B12-binding:radical SAM family protein [Dechloromonas
           aromatica RCB]
 gi|71849429|gb|AAZ48925.1| Cobalamin B12-binding:Radical SAM [Dechloromonas aromatica RCB]
          Length = 548

 Score = 37.7 bits (86), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 55/235 (23%), Positives = 86/235 (36%), Gaps = 23/235 (9%)

Query: 148 RVVDTDYSVEDKFERLSIVDGGYN-----RKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           R++D D      +E+L+     Y+      ++   A +    GC   C+FC       + 
Sbjct: 168 RILDLDELPFPAYEKLAGFPHAYHLPLFAYEKRFGATMITSRGCPYTCSFCDRTVFERLY 227

Query: 203 ISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
            + S     D  + L DN GV  I +      A + +  D   C    L+     I+   
Sbjct: 228 KTNSAQYTYDHMKYLRDNFGVYHINMYDDLFTAKKQRVFD--LCEL--LIEKPLGIQWNC 283

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA-YEYRQIID 320
            +R  T H  D     +K  G L V M         G +     M  RH A      + D
Sbjct: 284 AIR--TGHTSDEMLAKLKQAGALMVSM---------GIESADPGMMERHKAGVTLDAVRD 332

Query: 321 RIRSVRP-DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
            +R +    +     FI G PGET +  + T D +  +   +    K+SP  G P
Sbjct: 333 TVRQIHAAGLRAKGLFIFGMPGETPETVKVTSDFILSLDLDEMNMTKFSPLHGAP 387


>gi|322435267|ref|YP_004217479.1| hopanoid biosynthesis associated radical SAM protein HpnJ
           [Acidobacterium sp. MP5ACTX9]
 gi|321162994|gb|ADW68699.1| hopanoid biosynthesis associated radical SAM protein HpnJ
           [Acidobacterium sp. MP5ACTX9]
          Length = 496

 Score = 37.7 bits (86), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 5/90 (5%)

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
           +SG  +ILK++ +  T    R+ +     +   + I +DFI+G PGET    R T+D   
Sbjct: 312 ESGDPQILKNIKKGATVERAREFVKDCHDL--GLIIHADFILGLPGETKQSIRNTIDFAK 369

Query: 356 KIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            +      + + S     PG+   E  ++N
Sbjct: 370 SL---DCETIQVSIAHAYPGTEFYEFAEKN 396


>gi|255013325|ref|ZP_05285451.1| Fe-S oxidoreductase [Bacteroides sp. 2_1_7]
          Length = 485

 Score = 37.7 bits (86), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 53/240 (22%), Positives = 95/240 (39%), Gaps = 26/240 (10%)

Query: 185 GCDKFCTFCVVPYTRGIEI--SRSLSQVVDEARKLIDN--GVCEITLLGQNVNAWRGKGL 240
           GC   C FCV P T       +RS   VV E   +  N   V E+ +      A + + L
Sbjct: 217 GCPFRCNFCVYPQTMHGHAFRARSAENVVAEFEYIAANFPDVKEVVIEDDTFTANKKRVL 276

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTTSH--PRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
                   D+   L E K   RL++  +     D+   L        +++P     ++SG
Sbjct: 277 --------DICRLLVEKKLNKRLKWLCNARVDLDLETMLAMKKAGCRLIIP----GIESG 324

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           S +IL ++ +      + Q +   +  +  + I + ++VG  GET +    T+ L  ++ 
Sbjct: 325 SQQILDNIKKGTKVEYFYQYVANAK--KAGLLIHACYMVGNQGETRETMEETLRLALRLN 382

Query: 359 YAQAFSFKYSPRLGTPGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIE 415
              A   ++ P +  PG+   +   EN   E      CL        +S  D   G++++
Sbjct: 383 TDTA---QFFPLIPYPGTEAYQWARENNYIETDYEKYCLPDGTHNTVLSLPDLSAGEMVD 439


>gi|298492837|ref|YP_003723014.1| radical SAM domain-containing protein ['Nostoc azollae' 0708]
 gi|298234755|gb|ADI65891.1| Radical SAM domain protein ['Nostoc azollae' 0708]
          Length = 543

 Score = 37.7 bits (86), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 71/322 (22%), Positives = 130/322 (40%), Gaps = 62/322 (19%)

Query: 116 EILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDK--FERLSIVDGGYNRK 173
           EIL  +PI         Y  +P ++++  +    +    +V +K  +E + +V+      
Sbjct: 185 EILAINPI---------YSEVPAVIQKQTYRGNTLSVSTAVTEKAAWENIFMVE------ 229

Query: 174 RGVTAFLTIQEGCDKFCTFCVVPYT----RGIEISRSLSQVVDEARKLIDNGVCEITLLG 229
                   +   C + C FC+  Y     R   +  SL   + +  K+ +     + LLG
Sbjct: 230 --------VVRSCPEMCRFCLASYLTLPFRTANLENSLIPAIQQGLKVTN----RLGLLG 277

Query: 230 QNVNAWRGKGLDGEKCTFSDLLYSLSEIK-GLVRLRYTTSHPRDMSDCLIKAHGDLDVLM 288
            +V          +   F +LL  +S+ K   VRL   +     +++ L       D   
Sbjct: 278 ASVT---------QHPEFPELLDYISQPKHDDVRLSVASVRTNTVTEKLATTLAKRDTRS 328

Query: 289 PYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDF--IVGFPGETDDD 346
             L + ++SGSD++ + +N++    E   II    + +     S     +VG PGE  +D
Sbjct: 329 --LTIAIESGSDKLRQIINKKLYNDE---IIQAAVNAKAGGLSSLKLYGMVGIPGEETED 383

Query: 347 FRAT---MDLVDKIGYAQAFSF---KYSPRLGTPGSNMLEQVDENVKAE-RLLCLQKKLR 399
             AT   M  V K       +     + P+  TP     +    N ++E RL  LQK+L+
Sbjct: 384 LDATVAVMKAVKKAAPGLRLTLGCSTFVPKSHTP----FQWFAVNKQSEKRLQFLQKQLK 439

Query: 400 EQQVSFN-DACVGQIIEVLIEK 420
            Q + F  ++    II+ L+ +
Sbjct: 440 PQGIDFRPESYNWSIIQALLSR 461


>gi|213027665|ref|ZP_03342112.1| MiaB protein (putative tRNA-thiotransferase (or
           tRNA-methylthiotransferase)) [Salmonella enterica subsp.
           enterica serovar Typhi str. 404ty]
          Length = 124

 Score = 37.7 bits (86), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 47/88 (53%), Gaps = 1/88 (1%)

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVL 440
           V E  K +RL  LQ+++ +Q ++++   +G    +L+E   ++   +L GR+   + V  
Sbjct: 3   VPEEEKKQRLYILQERINQQAMAWSRRMLGTTQRILVEGTSRKNIMELSGRTENNRVVNF 62

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 IG  + V ITDV  ++L G++V
Sbjct: 63  EGTPEMIGKFVDVEITDVYPNSLRGKVV 90


>gi|209527580|ref|ZP_03276081.1| Radical SAM domain protein [Arthrospira maxima CS-328]
 gi|209492003|gb|EDZ92357.1| Radical SAM domain protein [Arthrospira maxima CS-328]
          Length = 541

 Score = 37.7 bits (86), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 65/270 (24%), Positives = 110/270 (40%), Gaps = 43/270 (15%)

Query: 185 GCDKFCTFCVVPYT----RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL 240
            C + C FC+  Y     R   +  SL   ++    +       + LLG +V        
Sbjct: 233 SCPEMCRFCLASYLTLPFRTANLESSLIPAINRGLTVTK----RLGLLGASVT------- 281

Query: 241 DGEKCTFSDLLYSLSEIK-GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
             +   F++LL  LS+ +   VRL   +     ++  L       D     + + V+SGS
Sbjct: 282 --QHPEFNELLDYLSQPEYDDVRLSLASVRTNTVTVKLAATLAKRDTRS--ITIAVESGS 337

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDF--IVGFPGETDDDFRATMDLVDKI 357
           DR+ K +N++    +  +II    + +     S     +VG PGE  +D  AT+ ++ +I
Sbjct: 338 DRLRKIINKK---LDNDEIIQAAINAKAGGLKSLKLYGMVGIPGEESEDLEATVAMMQEI 394

Query: 358 GYAQA------FSFKYSPRLGTPGSNMLEQVDENVKAE-RLLCLQKKLREQQVSFN-DAC 409
             A            + P+  TP     +    N  AE RL  L+KKLR   + F  ++ 
Sbjct: 395 KKAAPGLRLTLGCSTFVPKAHTP----FQWFGVNPAAEKRLKFLEKKLRSNGMDFRPESY 450

Query: 410 VGQIIEVLIEKHGK------EKGKLVGRSP 433
              +I+ LI +  +      EK +  G SP
Sbjct: 451 RWSVIQALISRGDRRLSYLLEKVRHYGDSP 480


>gi|118581231|ref|YP_902481.1| radical SAM domain-containing protein [Pelobacter propionicus DSM
           2379]
 gi|118503941|gb|ABL00424.1| Radical SAM domain protein [Pelobacter propionicus DSM 2379]
          Length = 476

 Score = 37.7 bits (86), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 69/320 (21%), Positives = 128/320 (40%), Gaps = 52/320 (16%)

Query: 94  RIKE-GGDLLVVVAGCVAQAEGEEILRRSP-IVNVVVGPQTYYRLPELLER--------- 142
           RIKE   D++ V+ G       EE LR     +++V   +  Y   EL E          
Sbjct: 90  RIKEVKPDVITVLTGPHVTILPEESLRAGKGAIDIVCRGEFDYSTKELCEGRPWDRVDGI 149

Query: 143 --ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQ-----------EGCDKF 189
              R GK V   D  + +  + L  V   Y R   ++ ++               GC   
Sbjct: 150 SFLRDGKAVHTPDRPMIEDLDALPFVAPVYRRDLPISEYVIPHFKNPYVSIYSSRGCPSK 209

Query: 190 CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSD 249
           C +C+ P T   +  R+ S     AR + +    EI  + +N+   R    D +  TF+ 
Sbjct: 210 CIYCLWPQTFSGQRMRTRS-----ARNVYE----EIKWITENIPEMRELSFDDD--TFTA 258

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCL-IKAHGDLDVL-------MPYLHLPVQSGSDR 301
                 E+  L++       P  +S  +  +A+ D + L       + ++ +  +SG+ +
Sbjct: 259 NREHAREVARLIK-------PLGISWTINARANTDYETLRVMRECGLRHVVVGFESGNAQ 311

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
           ILK++ +  +  +  Q +   + +   ++I   FI+G PGET +    T++   ++    
Sbjct: 312 ILKNIKKGVSKEQAIQFVKDCKKL--GLSIHGAFIMGLPGETRETIAETINYAKQLDLNS 369

Query: 362 AFSFKYSPRLGTPGSNMLEQ 381
             +   SP  GT    M ++
Sbjct: 370 IQASLASPYPGTEFYTMCKE 389


>gi|291278589|ref|YP_003495424.1| hypothetical protein DEFDS_0156 [Deferribacter desulfuricans SSM1]
 gi|290753291|dbj|BAI79668.1| conserved hypothetical protein [Deferribacter desulfuricans SSM1]
          Length = 336

 Score = 37.7 bits (86), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 40/177 (22%), Positives = 77/177 (43%), Gaps = 15/177 (8%)

Query: 185 GCDKFCTFCVVPYTRGIEISRSLSQVVDEARKL--IDNGVCEITLLGQNVNAWRGKGLDG 242
           GC K C +C      G+++      V D+      +     +I   G + N      L  
Sbjct: 16  GCPKKCIYCQQNSITGVKLHDFKKDVEDQVNLFLRVKKKWGKIAFYGGSFNL-----LPK 70

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
           +K  F   LY ++    ++++R  + +P      LI    D +V    + L VQS S+++
Sbjct: 71  DKREF---LYKVANSINILKVR-VSCYPSGFDTELINEMKDNNV--EDVELGVQSFSEKV 124

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
           L+   R +++ E  +I+  ++    ++ I    +VG  GE   D    +D +DK+ +
Sbjct: 125 LRLNGRDYSSNEVVKILKLLKQNNFNVGIQ--IMVGMFGEEYGDIIQNIDFIDKLKF 179


>gi|218440952|ref|YP_002379281.1| radical SAM protein [Cyanothece sp. PCC 7424]
 gi|218173680|gb|ACK72413.1| Radical SAM domain protein [Cyanothece sp. PCC 7424]
          Length = 538

 Score = 37.7 bits (86), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 58/249 (23%), Positives = 104/249 (41%), Gaps = 33/249 (13%)

Query: 185 GCDKFCTFCVVPYT----RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL 240
            C + C FC+  Y     R   +  SL   +++  K+ D     I LLG +V        
Sbjct: 231 SCPEMCRFCLASYLTLPFRTASLEGSLIPAIEKGLKVTDR----IGLLGASVT------- 279

Query: 241 DGEKCTFSDLLYSLSEIK-GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
             +   F  LL  L++     VRL   +     +++ L       D     + + ++SGS
Sbjct: 280 --QHPEFETLLDYLAQPDYDQVRLSIASVRTNTVTEKLASILAKRDTRS--ITIAIESGS 335

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG- 358
           ++I K +N++ +  E  Q     ++     AI    +VG P E + D   T+ ++ ++  
Sbjct: 336 EKIRKIINKKLSNEEIIQAAINAKAGGLK-AIKFYGMVGIPAEEETDIEQTVKILQEVKK 394

Query: 359 YAQAFSFK-----YSPRLGTPGSNMLEQVDENVKAE-RLLCLQKKLREQQVSFN-DACVG 411
            A           + P+  TP     +    N +A+ RL  L+KKLR Q + F  ++   
Sbjct: 395 TASGLRLTLGCSTFVPKSHTP----FQWFGVNPEAKKRLKTLEKKLRSQGIDFRPESYNW 450

Query: 412 QIIEVLIEK 420
            +I+ LI +
Sbjct: 451 SVIQALISR 459


>gi|116872907|ref|YP_849688.1| coproporphyrinogen III oxidase [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|116741785|emb|CAK20909.1| oxygen-independent coproporphyrinogen III oxidase, putative
           [Listeria welshimeri serovar 6b str. SLCC5334]
          Length = 385

 Score = 37.7 bits (86), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 23/84 (27%), Positives = 45/84 (53%), Gaps = 3/84 (3%)

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
           ++P D+S   ++   D  V    + + VQS ++ +LK + R HT  +  Q ++ +R +  
Sbjct: 104 ANPGDLSLSKVQTMQDHGV--NRISMGVQSFNNELLKKIGRIHTVKDVYQSVENMRKIGF 161

Query: 328 DIAISSDFIVGFPGETDDDFRATM 351
           +  +S D I   PG+ + DF+ T+
Sbjct: 162 E-NVSIDLIFSLPGQKEADFKDTL 184


>gi|256372069|ref|YP_003109893.1| Coproporphyrinogen dehydrogenase [Acidimicrobium ferrooxidans DSM
           10331]
 gi|256008653|gb|ACU54220.1| Coproporphyrinogen dehydrogenase [Acidimicrobium ferrooxidans DSM
           10331]
          Length = 363

 Score = 37.7 bits (86), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 49/99 (49%), Gaps = 8/99 (8%)

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSV---RPDIAISSDFIVGFPGETDDDFRATM 351
           +QS  DR+L  + R H A +    + RIR+V     D+ +S D I G P E D  +R T+
Sbjct: 127 LQSLDDRVLAHLGRGHNAAD---ALGRIRAVVEAFADLRVSVDLIFGDPLEDDASWRRTL 183

Query: 352 DLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER 390
             V  +G     ++  +   GT   ++  +VD+  +A R
Sbjct: 184 AGVVDLGIGHVSTYALTVEPGTRFRSL--RVDDETQARR 220


>gi|254303175|ref|ZP_04970533.1| possible iron-sulfur (Fe-S) dehydrogenase [Fusobacterium nucleatum
           subsp. polymorphum ATCC 10953]
 gi|148323367|gb|EDK88617.1| possible iron-sulfur (Fe-S) dehydrogenase [Fusobacterium nucleatum
           subsp. polymorphum ATCC 10953]
          Length = 442

 Score = 37.7 bits (86), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 42/180 (23%), Positives = 81/180 (45%), Gaps = 24/180 (13%)

Query: 40  DSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGG 99
           +SL  E   + +  E++    +AD+IV+ +       +++ Y++    R       K G 
Sbjct: 39  ESLNAEAKIYDETIEKIPLDLEADIIVMTSI---TGTSQRCYAYADYFR-------KRG- 87

Query: 100 DLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK----RVVDTDYS 155
            + VV+ G       EE  + + +V +    QT+   P++L   + G+     + D +++
Sbjct: 88  -ITVVLGGVHPSLMPEEASQHADVVMIGFAEQTF---PQMLLDFKNGRLKRMYIQDKEFN 143

Query: 156 VEDK-FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDE 213
           +E+K   R  ++      K   TA + +  GC   CTFC  P   G +I  R + +V+ E
Sbjct: 144 LENKVIPRRELLQ---KDKYITTATVEVIRGCSLPCTFCAYPTAFGRKIYKRPIKEVLSE 200


>gi|78221818|ref|YP_383565.1| radical SAM family protein [Geobacter metallireducens GS-15]
 gi|78193073|gb|ABB30840.1| Radical SAM [Geobacter metallireducens GS-15]
          Length = 501

 Score = 37.7 bits (86), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 48/210 (22%), Positives = 82/210 (39%), Gaps = 33/210 (15%)

Query: 172 RKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQN 231
           +K    A ++   GC   C+FC          S+ L        +  +N V E+ +L  N
Sbjct: 191 KKNARLAIVSSSRGCKSQCSFC----------SQQLFWAQSWRARSAENFVAELEML-HN 239

Query: 232 VNAWRGKGLDGEKCTFS-----DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV 286
           V+  +   L  E  TF       +L  + E +  V+L   T     + D L     D D+
Sbjct: 240 VHGVQVAMLSDELPTFDRERWVRILDLMVEREVPVKLLMETR----VDDIL----RDADI 291

Query: 287 LMPY-------LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGF 339
           +  Y       +++ V++GS   L    +     + +Q ID I     DI   + F++G 
Sbjct: 292 MDKYREGGVEHIYVGVEAGSQETLDLFKKDTEVAQSKQAIDLINGA--DIVSETSFVLGM 349

Query: 340 PGETDDDFRATMDLVDKIGYAQAFSFKYSP 369
           P +T +    T++L        AF    +P
Sbjct: 350 PDDTPESIEQTIELAKHYNPDMAFFLAIAP 379


>gi|220934411|ref|YP_002513310.1| oxygen-independent coproporphyrinogen III oxidase [Thioalkalivibrio
           sp. HL-EbGR7]
 gi|219995721|gb|ACL72323.1| oxygen-independent coproporphyrinogen III oxidase [Thioalkalivibrio
           sp. HL-EbGR7]
          Length = 465

 Score = 37.7 bits (86), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 55/112 (49%), Gaps = 4/112 (3%)

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
           L L VQ    R+ +++NR   A +   +++  R V    +IS D I G P +T   F  T
Sbjct: 176 LSLGVQDFDPRVQRAVNRIQPASQTLHVLEEARQVGFR-SISVDLIYGLPLQTPASFAVT 234

Query: 351 MDLVDKIGYAQ--AFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLRE 400
           ++ + + G  +   F++ + P    P   + EQ D    A+RLL LQ+ + +
Sbjct: 235 VERMIEAGPDRISVFNYAHLPERFKPQRRINEQ-DLPSPADRLLILQQTIAQ 285


>gi|312904055|ref|ZP_07763223.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Enterococcus faecalis TX0635]
 gi|310632531|gb|EFQ15814.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Enterococcus faecalis TX0635]
          Length = 289

 Score = 37.7 bits (86), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 7/64 (10%)

Query: 291 LHLPVQSGSDRILKSMNRRHTA---YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDF 347
           L + VQ+  DR+LK + R+HTA   YE  + +++         +S D I   PG+T + F
Sbjct: 24  LSMGVQTFDDRLLKKIGRKHTAADVYETMKFLEKENFTN----VSIDLIYALPGQTLESF 79

Query: 348 RATM 351
           R  +
Sbjct: 80  RDAL 83


>gi|261403314|ref|YP_003247538.1| Radical SAM domain protein [Methanocaldococcus vulcanius M7]
 gi|261370307|gb|ACX73056.1| Radical SAM domain protein [Methanocaldococcus vulcanius M7]
          Length = 459

 Score = 37.7 bits (86), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 56/267 (20%), Positives = 120/267 (44%), Gaps = 32/267 (11%)

Query: 175 GVTAFLTIQEGCDKFCTFCVV------PYTRGIEISRSLSQVVDEARKLIDNGVCEITLL 228
           G +  L I  GC + C FC+       P  R +E    L  + +E  K+  N V ++ L+
Sbjct: 180 GKSFLLEIGRGCPRRCKFCLARAIYYPPRFRKLE---DLMYLAEEGIKV--NKVNKVALI 234

Query: 229 GQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLM 288
             +V  ++      E C F D        KG V++  ++     +++ L+K      + +
Sbjct: 235 SPSVGDYK---YIVELCNFLDE-------KG-VQVSPSSLRADTITEELMKV-----LKL 278

Query: 289 PYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFR 348
             L +  ++GS+R+ + + +  +  +    +D  +    +  I   F+VG P ET++D  
Sbjct: 279 KTLTIAPEAGSERLREFIKKDISEEDIMNAVDIAKKFNVE-KIKLYFMVGLPTETEEDVE 337

Query: 349 ATMDLVDKI-GYAQAFSFKYSPRLGTPGSNM-LEQVDENVKAERLLCLQKKLREQQVSFN 406
             ++L  KI    +      +P +  P ++  +E  D + K +++  ++KKL+++ +   
Sbjct: 338 EIINLSKKIKNQIKKVEVSINPMIPKPHTDFEMEPFDLSSK-QKVKYIEKKLKKENIKVG 396

Query: 407 DACVGQII-EVLIEKHGKEKGKLVGRS 432
                 ++ + ++ +  K  G  +GRS
Sbjct: 397 TENFNAMVCQCVLARGDKIIGDYLGRS 423


>gi|322418113|ref|YP_004197336.1| oxygen-independent coproporphyrinogen III oxidase [Geobacter sp.
           M18]
 gi|320124500|gb|ADW12060.1| oxygen-independent coproporphyrinogen III oxidase [Geobacter sp.
           M18]
          Length = 381

 Score = 37.7 bits (86), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 26/99 (26%), Positives = 47/99 (47%), Gaps = 1/99 (1%)

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
           L L +QS  +R+L+ + R HT +E     ++ R+   D  IS D +   PG++   +RA 
Sbjct: 117 LSLGIQSFEERLLQRLGRVHTVHEAVGAFEQARAAGFD-NISIDLMHSLPGQSLKQWRAA 175

Query: 351 MDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAE 389
           +     +G     ++  S   GTP   + E+ +  +  E
Sbjct: 176 LRKGIALGPEHISAYALSVEEGTPFERLYERGELPLPGE 214


>gi|317475986|ref|ZP_07935241.1| radical SAM superfamily protein [Bacteroides eggerthii 1_2_48FAA]
 gi|316907918|gb|EFV29617.1| radical SAM superfamily protein [Bacteroides eggerthii 1_2_48FAA]
          Length = 487

 Score = 37.4 bits (85), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 45/205 (21%), Positives = 82/205 (40%), Gaps = 19/205 (9%)

Query: 185 GCDKFCTFCVVPYTRGIEI--SRSLSQVVDEARKLIDN--GVCEITLLGQNVNAWRGKGL 240
           GC   C FCV P T       +RS   VV E   +  N   V E+ +      A + + L
Sbjct: 217 GCPFRCNFCVYPQTMHGHAFRARSAENVVAEFEYIAANFPDVKEVVIEDDTFTANKKRVL 276

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300
           D  +      LY    +K L   R       D+            +++P     ++SGS 
Sbjct: 277 DICRLLIEKKLYK--RLKWLCNARVNL----DLETMRTMKKAGCRLIIP----GIESGSQ 326

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
           +IL ++ +     ++ + +   +  +  + I + ++VG  GET D    T+ L  ++   
Sbjct: 327 QILDNIKKGTKVEQFYEYVANAK--KAGLLIHACYMVGNEGETKDTMNETLQLALRLNTD 384

Query: 361 QAFSFKYSPRLGTPGSNMLEQVDEN 385
            A   ++ P +  PG+   +   +N
Sbjct: 385 TA---QFFPLIPYPGTEAYQWAKDN 406


>gi|301309927|ref|ZP_07215866.1| Fe-S oxidoreductase [Bacteroides sp. 20_3]
 gi|300831501|gb|EFK62132.1| Fe-S oxidoreductase [Bacteroides sp. 20_3]
          Length = 485

 Score = 37.4 bits (85), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 53/240 (22%), Positives = 95/240 (39%), Gaps = 26/240 (10%)

Query: 185 GCDKFCTFCVVPYTRGIEI--SRSLSQVVDEARKLIDN--GVCEITLLGQNVNAWRGKGL 240
           GC   C FCV P T       +RS   VV E   +  N   V E+ +      A + + L
Sbjct: 217 GCPFRCNFCVYPQTMHGHAFRARSAENVVAEFEYIAANFPDVKEVVIEDDTFTANKKRVL 276

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTTSH--PRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
                   D+   L E K   RL++  +     D+   L        +++P     ++SG
Sbjct: 277 --------DICRLLVEKKLNKRLKWLCNARVDLDLETMLAMKKAGCRLIIP----GIESG 324

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           S +IL ++ +      + Q +   +  +  + I + ++VG  GET +    T+ L  ++ 
Sbjct: 325 SQQILDNIKKGTKVEYFYQYVANAK--KAGLLIHACYMVGNQGETRETMEETLRLALRLN 382

Query: 359 YAQAFSFKYSPRLGTPGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIE 415
              A   ++ P +  PG+   +   EN   E      CL        +S  D   G++++
Sbjct: 383 TDTA---QFFPLIPYPGTEAYQWARENNYIETDYEKYCLPDGTHNTVLSLPDLSAGEMVD 439


>gi|257089709|ref|ZP_05584070.1| coproporphyrinogen III oxidase [Enterococcus faecalis CH188]
 gi|256998521|gb|EEU85041.1| coproporphyrinogen III oxidase [Enterococcus faecalis CH188]
 gi|315578402|gb|EFU90593.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Enterococcus faecalis TX0630]
          Length = 382

 Score = 37.4 bits (85), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 7/64 (10%)

Query: 291 LHLPVQSGSDRILKSMNRRHTA---YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDF 347
           L + VQ+  DR+LK + R+HTA   YE  + +++         +S D I   PG+T + F
Sbjct: 117 LSMGVQTFDDRLLKKIGRKHTAADVYETMKFLEKENFTN----VSIDLIYALPGQTLESF 172

Query: 348 RATM 351
           R  +
Sbjct: 173 RDAL 176


>gi|299822877|ref|ZP_07054763.1| coproporphyrinogen dehydrogenase [Listeria grayi DSM 20601]
 gi|299816406|gb|EFI83644.1| coproporphyrinogen dehydrogenase [Listeria grayi DSM 20601]
          Length = 375

 Score = 37.4 bits (85), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 1/57 (1%)

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351
           VQS ++ +LK + R HT  +  Q +D +R +  D  +S D I   P +T  DF+ T+
Sbjct: 119 VQSFNNELLKKIGRIHTTKDVYQSVDNLRKIGLD-NVSIDLIFSLPTQTFADFKDTL 174


>gi|269798269|ref|YP_003312169.1| radical SAM protein [Veillonella parvula DSM 2008]
 gi|269094898|gb|ACZ24889.1| Radical SAM domain protein [Veillonella parvula DSM 2008]
          Length = 475

 Score = 37.4 bits (85), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 37/177 (20%), Positives = 74/177 (41%), Gaps = 16/177 (9%)

Query: 186 CDKFCTFCVVPY------TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
           CD  C +C  PY          +  R+L++ +++ + ++D+        G  V+     G
Sbjct: 162 CDTRCVYCSFPYGLYQDYAGKSQFLRALNRDIEDMKSIVDS-------YGLTVDTLYMGG 214

Query: 240 LDGEKCTFSDLLYSLSEIKGLVR--LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQS 297
                    D    L ++  LV     +T    R  S    K    L++ +  + +  Q+
Sbjct: 215 GTPTVLEDEDFHQVLKQLSLLVSEGHEFTVEAGRPDSVNPTKLRSMLELGVNRISINPQT 274

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
             D IL+ + R H+  +  +++  +++    +A++ DFI G P +T  +    MD V
Sbjct: 275 MQDDILRRIGRGHSVRDVDELLQYVKN-NTSLAVNMDFIAGLPNQTMSNMIENMDYV 330


>gi|253699307|ref|YP_003020496.1| hypothetical protein GM21_0664 [Geobacter sp. M21]
 gi|251774157|gb|ACT16738.1| conserved hypothetical protein [Geobacter sp. M21]
          Length = 318

 Score = 37.4 bits (85), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 2/67 (2%)

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
           + L +QS  D IL  +NR H+  EY   +DR+      I I +  I GFPGE    F   
Sbjct: 150 VELGLQSIDDAILTRINRGHSFAEYLSAVDRLAGR--GIDICTHLIYGFPGEKRSGFVKG 207

Query: 351 MDLVDKI 357
             L+  +
Sbjct: 208 ARLISSL 214


>gi|220928407|ref|YP_002505316.1| AMP-dependent synthetase and ligase [Clostridium cellulolyticum
           H10]
 gi|219998735|gb|ACL75336.1| AMP-dependent synthetase and ligase [Clostridium cellulolyticum
           H10]
          Length = 2142

 Score = 37.4 bits (85), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 35/177 (19%), Positives = 76/177 (42%), Gaps = 14/177 (7%)

Query: 185 GCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK 244
           GC   C +C   +++   + RS   + DE      NG+    ++    N      LD + 
Sbjct: 643 GCPYMCLYCHKIWSKH-HVRRSAQNIYDEIEYYYKNGITNFAVIDDCFN------LDMQN 695

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY--LHLPVQSGSDRI 302
              S  ++ L     +    +  +  R   D L   + DL V      ++L +++ S R+
Sbjct: 696 ---SSEVFKLIIKNKIKIQIFFPNGLR--GDILTPDYIDLMVEAGTRGINLSLETASPRL 750

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
            K + +     +++Q+++ I    P++ +    + GFP ET+++   T++ +  I +
Sbjct: 751 QKLLMKNLDLNKFKQVVNYIAQKHPEVILEMATMHGFPTETEEEAMMTLNFIKDIKW 807


>gi|296117288|ref|ZP_06835879.1| hopanoid biosynthesis associated radical SAM protein HpnJ
           [Gluconacetobacter hansenii ATCC 23769]
 gi|295976181|gb|EFG82968.1| hopanoid biosynthesis associated radical SAM protein HpnJ
           [Gluconacetobacter hansenii ATCC 23769]
          Length = 474

 Score = 37.4 bits (85), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 70/310 (22%), Positives = 118/310 (38%), Gaps = 50/310 (16%)

Query: 105 VAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE------------RARFGKRVVDT 152
           + G     + EE L  +P V+ V   +  Y + E+ E            R   GK + + 
Sbjct: 103 MVGAKVAVQPEESLLNAPPVDFVARNEFDYTIKEIAEGRDWKDVDGITWRDPDGKIISNR 162

Query: 153 DYSVEDKFERLSIVDGGYNRKRGVTAF-----------LTIQEGCDKFCTFCVVPYTRGI 201
           D ++ +  + L  V   Y R   +  +           +    GC   CTFC+ P T G 
Sbjct: 163 DRAMIEDMDSLPFVTEVYKRDLKIEDYFIGYLMHPYISIYTGRGCKSRCTFCLWPQTVGG 222

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
              R+ S          ++   EI L  Q     + +    +     DL  + +  K L 
Sbjct: 223 HHYRTRSP---------EHVAAEIRLAKQYFPQVK-EFFFDDDTFTDDLPRAEAIAKELG 272

Query: 262 RLRYTTS------HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
           +L  T S       PR   + L KA+G   +L+ Y     +SG+ +IL ++ +       
Sbjct: 273 KLGVTWSCNAKANVPRKTLEVL-KANGLRLLLVGY-----ESGNQQILHNIKKGMRVEVA 326

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
           R+       +   I I   FI+G PGET +  + T+    +I      + + S     PG
Sbjct: 327 REFTKNCHEL--GIKIHGTFILGLPGETKETIQETIKFATEI---NPHTLQVSLAAPYPG 381

Query: 376 SNMLEQVDEN 385
           + + +Q  EN
Sbjct: 382 TFLHKQATEN 391


>gi|237785908|ref|YP_002906613.1| oxygen-independent coproporphyrinogen III oxidase [Corynebacterium
           kroppenstedtii DSM 44385]
 gi|237758820|gb|ACR18070.1| oxygen-independent coproporphyrinogen III oxidase [Corynebacterium
           kroppenstedtii DSM 44385]
          Length = 390

 Score = 37.4 bits (85), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 3/63 (4%)

Query: 293 LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA-ISSDFIVGFPGETDDDFRATM 351
           L +QS S+++L+ ++RRHT    R +     + R     ++ D I G PGE DDD + ++
Sbjct: 132 LGMQSASEKVLRVLDRRHTPG--RPVAAAQEARRAGFEHVNLDLIYGTPGEVDDDVKRSV 189

Query: 352 DLV 354
           D V
Sbjct: 190 DAV 192


>gi|167586671|ref|ZP_02379059.1| Radical SAM domain protein [Burkholderia ubonensis Bu]
          Length = 473

 Score = 37.4 bits (85), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 56/217 (25%), Positives = 89/217 (41%), Gaps = 47/217 (21%)

Query: 185 GCDKFCTFCVVPYTRGIEI--SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG 242
           GC   CTFC+ P T       +RS+  V+ EA+ + DN + E+  L           +  
Sbjct: 205 GCKSRCTFCLWPQTVSGHRYRTRSVENVLAEAKWIRDN-MPEVKEL-----------MFD 252

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPV------- 295
           +     DL  + +   GL +L  T S       C  KA+      +PY  L V       
Sbjct: 253 DDTFTDDLPRAEAIAIGLGKLGMTWS-------CNAKAN------VPYKSLKVMKENGLR 299

Query: 296 ------QSGSDRILKSMNRR-HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFR 348
                 +SG D+IL ++ +   T +  R   D     +  I I   FI+G PGET +  +
Sbjct: 300 LLLVGFESGDDQILVNIKKGVRTDFARRFSAD---CKKLGIKIHGTFILGLPGETQETIK 356

Query: 349 ATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            T++   +I      + + S     PG+ + +Q  EN
Sbjct: 357 KTIEYAKEI---NPHTIQVSLAAPYPGTTLYKQAVEN 390


>gi|126458934|ref|YP_001055212.1| radical SAM domain-containing protein [Pyrobaculum calidifontis JCM
           11548]
 gi|126248655|gb|ABO07746.1| Radical SAM domain protein [Pyrobaculum calidifontis JCM 11548]
          Length = 393

 Score = 37.4 bits (85), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 44/198 (22%), Positives = 75/198 (37%), Gaps = 11/198 (5%)

Query: 165 IVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCE 224
           ++   Y+   G    + I   C   CTFC   +  G    R +  V    +  +  G  E
Sbjct: 128 LIHKTYSTSLGAYPPIEIMRSCAYRCTFCQT-WFHGSVRYRPVENVAQMVKHYVAAGREE 186

Query: 225 ITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL 284
           I  +   V    G   DG+      L+  L  ++      Y  + P +     +     L
Sbjct: 187 IRFIAP-VGFLYGS-TDGKTPNVDALVGLLRAVREAGGRPYLGTFPSETRPETV-TRDVL 243

Query: 285 DVLMPY-----LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGF 339
             + P+     L   +QSGS+R+L S  R H      +      +V+       D I G 
Sbjct: 244 GAIKPFVANRRLSFGLQSGSERLLASTKRDHDVAVVEEAT--ATAVKMGFKPVVDVIAGL 301

Query: 340 PGETDDDFRATMDLVDKI 357
           PGE ++D  AT+  ++++
Sbjct: 302 PGEEEEDVVATVKAMERL 319


>gi|115351104|ref|YP_772943.1| radical SAM domain-containing protein [Burkholderia ambifaria AMMD]
 gi|115281092|gb|ABI86609.1| Radical SAM domain protein [Burkholderia ambifaria AMMD]
          Length = 473

 Score = 37.4 bits (85), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 54/211 (25%), Positives = 88/211 (41%), Gaps = 35/211 (16%)

Query: 185 GCDKFCTFCVVPYTRGIEI--SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG 242
           GC   CTFC+ P T       +RS+  V+ EA+ + DN + E+  L           +  
Sbjct: 205 GCKSRCTFCLWPQTVSGHRYRTRSVENVLAEAKWIRDN-MPEVKEL-----------MFD 252

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL-------MPYLHLPV 295
           +     DL  + +   GL +L  T S       C  KA+     L       +  L +  
Sbjct: 253 DDTFTDDLPRAEAIAIGLGKLGMTWS-------CNAKANVPYKTLKVMKENGLRLLLVGF 305

Query: 296 QSGSDRILKSMNRR-HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           +SG D+IL ++ +   T +  R   D     +  I I   FI+G PGET +  + T++  
Sbjct: 306 ESGDDQILVNIKKGVRTDFARRFSAD---CKKLGIKIHGTFILGLPGETQETIKKTIEYA 362

Query: 355 DKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            +I      + + S     PG+ + +Q  EN
Sbjct: 363 KEI---NPHTIQVSLAAPYPGTTLYKQAVEN 390


>gi|300858954|ref|YP_003783937.1| oxygen-independent coproporphyrinogen III oxidase [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300686408|gb|ADK29330.1| oxygen-independent coproporphyrinogen III oxidase [Corynebacterium
           pseudotuberculosis FRC41]
 gi|302206654|gb|ADL10996.1| Oxygen-independent coproporphyrinogen III oxidase [Corynebacterium
           pseudotuberculosis C231]
 gi|308276897|gb|ADO26796.1| oxygen-independent Coproporphyrinogen III oxidase [Corynebacterium
           pseudotuberculosis I19]
          Length = 384

 Score = 37.4 bits (85), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 36/145 (24%), Positives = 60/145 (41%), Gaps = 8/145 (5%)

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
           T S+P   S      H  L+     + L +QS S  +LK + R+HT            + 
Sbjct: 106 TESNPESTSPEFF--HSLLESGFTRVSLGMQSASSSVLKVLERKHTPGRAFAAAKEALAA 163

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-----NMLE 380
             +  ++ D I G P ET++D R T+  V   G     ++      GT  +       L 
Sbjct: 164 GFN-HVNLDMIYGTPTETNEDVRETLSRVVDTGVDHVSAYSLIVEDGTAMARKVRRGELP 222

Query: 381 QVDENVKAERLLCLQKKLREQQVSF 405
             DE+  A+R   + + LR++  S+
Sbjct: 223 PPDEDTYADRYWMIDQALRQEGFSW 247


>gi|269792377|ref|YP_003317281.1| oxygen-independent coproporphyrinogen III oxidase
           [Thermanaerovibrio acidaminovorans DSM 6589]
 gi|269100012|gb|ACZ18999.1| oxygen-independent coproporphyrinogen III oxidase
           [Thermanaerovibrio acidaminovorans DSM 6589]
          Length = 366

 Score = 37.4 bits (85), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 27/111 (24%), Positives = 54/111 (48%), Gaps = 2/111 (1%)

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
           ++P  +   L+K   ++      + L VQS  DR L+ + R HTA +  +  + +  +R 
Sbjct: 98  ANPESLGVDLLKCWTEVSPGPLRVSLGVQSFLDRELRRLGRVHTASDAVRASEMV--LRA 155

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
            I +S D +   PG++  DF  ++ +   +G     +++ +   GTP  +M
Sbjct: 156 GIPLSVDLMFRLPGQSLRDFSYSLKMAVGLGVDHLSAYELTVEEGTPFGDM 206


>gi|172039281|ref|YP_001805782.1| hypothetical protein cce_4368 [Cyanothece sp. ATCC 51142]
 gi|171700735|gb|ACB53716.1| unknown [Cyanothece sp. ATCC 51142]
          Length = 535

 Score = 37.4 bits (85), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 58/262 (22%), Positives = 115/262 (43%), Gaps = 41/262 (15%)

Query: 185 GCDKFCTFCVVPYT----RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL 240
            C + C FC+  Y     R   +  SL   +++  ++ +     I LLG +V        
Sbjct: 231 SCPEMCRFCLASYLTLPFRTASLEGSLIPAIEKGLQVTN----RIGLLGASVT------- 279

Query: 241 DGEKCTFSDLLYSLSEIKGL-VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
             +   F+DLL  L + K   VR+   +     +++ L K   D +     + + V+SGS
Sbjct: 280 --QHPEFNDLLDYLYQPKYEGVRVSIASVRTNTLTEKLAKILSDRNTKS--VTIAVESGS 335

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDF----IVGFPGETDDDFRATMDLVD 355
           ++I   +N++    E  +II    ++   +    +     +VG P E D+D   T+ +++
Sbjct: 336 EKIRNIINKK---LENEEIIQA--AINAKVGGLKNLKLYGMVGIPEENDEDIEQTIMMLE 390

Query: 356 KIGYAQA---FSF---KYSPRLGTPGSNMLEQVDEN-VKAERLLCLQKKLREQQVSFN-D 407
            I  A      +F    + P+  TP     + +  N +  +RL  LQK+L ++ + F  +
Sbjct: 391 SIKKAAPGLRLTFGCSTFVPKSHTP----FQWLGVNKIAKKRLKYLQKQLSKKGIEFRPE 446

Query: 408 ACVGQIIEVLIEKHGKEKGKLV 429
           +    +I+ L+ +  +   KL+
Sbjct: 447 SYNWSVIQALMSRGDRRLSKLL 468


>gi|83589066|ref|YP_429075.1| radical SAM family protein [Moorella thermoacetica ATCC 39073]
 gi|83571980|gb|ABC18532.1| Radical SAM [Moorella thermoacetica ATCC 39073]
          Length = 656

 Score = 37.4 bits (85), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 1/75 (1%)

Query: 166 VDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEI 225
           +D   N     T +     GC   C FC+   T G+    SL +V D+  +L+  GV EI
Sbjct: 199 LDAAGNELSQRTVYYETSRGCPFACGFCLSSTTEGLRYF-SLERVRDDLERLLKAGVREI 257

Query: 226 TLLGQNVNAWRGKGL 240
             + +  NA + + L
Sbjct: 258 KFVDRTFNAHKKRAL 272


>gi|150007983|ref|YP_001302726.1| Fe-S oxidoreductase [Parabacteroides distasonis ATCC 8503]
 gi|149936407|gb|ABR43104.1| Fe-S oxidoreductase [Parabacteroides distasonis ATCC 8503]
          Length = 485

 Score = 37.4 bits (85), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 55/245 (22%), Positives = 97/245 (39%), Gaps = 36/245 (14%)

Query: 185 GCDKFCTFCVVPYTRGIEI--SRSLSQVVDEARKLIDN--GVCEITLLGQNVNAWRGKGL 240
           GC   C FCV P T       +RS   VV E   +  N   V E+ +      A + + L
Sbjct: 217 GCPFRCNFCVYPQTMHGHAFRARSAENVVAEFEYIAANFPDVKEVVIEDDTFTANKKRVL 276

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY------LHLP 294
                   D+   L E K   RL++          C  +   DL+ ++        L +P
Sbjct: 277 --------DICRLLVEKKLNKRLKWL---------CNARVDLDLETMLAMKKAGCRLIIP 319

Query: 295 -VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
            ++SGS +IL ++ +      + Q +   +  +  + I + ++VG  GET +    T+ L
Sbjct: 320 GIESGSQQILDNIKKGTKVEYFYQYVANAK--KAGLLIHACYMVGNQGETRETMEETLRL 377

Query: 354 VDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACV 410
             ++    A   ++ P +  PG+   +   EN   E      CL        +S  D   
Sbjct: 378 ALRLNTDTA---QFFPLIPYPGTEAYQWARENNYIETDYEKYCLPDGTHNTVLSLPDLSA 434

Query: 411 GQIIE 415
           G++++
Sbjct: 435 GEMVD 439


>gi|227503125|ref|ZP_03933174.1| coproporphyrinogen dehydrogenase [Corynebacterium accolens ATCC
           49725]
 gi|227076186|gb|EEI14149.1| coproporphyrinogen dehydrogenase [Corynebacterium accolens ATCC
           49725]
          Length = 379

 Score = 37.4 bits (85), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 58/147 (39%), Gaps = 12/147 (8%)

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
           T S+P   S     A  D       + L +QS S  +L+ + R HT     +  D  R  
Sbjct: 99  TESNPESTSPEYFAALADAG--FNRISLGMQSASHSVLQVLERAHTP---GRAFDAAREA 153

Query: 326 RPD--IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP-----GSNM 378
           R      ++ D I G P ETDD+ R T+D V + G     ++      GT         +
Sbjct: 154 REAGFQHVNLDMIYGTPTETDDNVRETLDRVLETGVDHVSAYSLIVEDGTRMARKVNKGL 213

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSF 405
           L   DE+V A R   +   L +    +
Sbjct: 214 LPAPDEDVLARRYEMISSTLEDAGFEW 240


>gi|108763990|ref|YP_632765.1| putative methyltransferase [Myxococcus xanthus DK 1622]
 gi|108467870|gb|ABF93055.1| putative methyltransferase [Myxococcus xanthus DK 1622]
          Length = 559

 Score = 37.4 bits (85), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 62/265 (23%), Positives = 103/265 (38%), Gaps = 32/265 (12%)

Query: 91  KNSRIKEGGDLLVVVAGC-----VAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA-- 143
            + R  EG +L VV+        V +++GE  L R  +++ +   Q    +P L+  A  
Sbjct: 160 NHHRRYEGNELAVVLDDLGADIYVVESQGELTLSR--VLDRLKAGQELSDVPNLIYPAEG 217

Query: 144 ---RFGKRVVDTDYSVEDKFERLSIVD--GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
              R G+  ++   +  +  +  +I+D  G      G T        C   C+FC  P  
Sbjct: 218 GPVRAGRYRINPPQAESNSLDE-NIIDWRGMAESPLGPTLQTRTARSCAYSCSFCAYPMR 276

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258
            G      +  V  E   + + G   +  +    N    +        F +L   L E +
Sbjct: 277 AGSLTLAGMDAVARELDAMAELGTQNVVFIDDTFNVPLKR--------FKELCRLLIERR 328

Query: 259 -GLVRLRY-TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
            G     Y   S+  D +  L    G   V      L ++SGS RIL +MN+  T  +Y 
Sbjct: 329 YGFNWFSYFRCSNSDDEAVDLAAQSGCRGVF-----LGIESGSPRILANMNKAATVEKYV 383

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPG 341
             + R+ +    I   + FI+GFPG
Sbjct: 384 SGMKRLHA--HGILTFASFILGFPG 406


>gi|294056057|ref|YP_003549715.1| hypothetical protein Caka_2529 [Coraliomargarita akajimensis DSM
           45221]
 gi|293615390|gb|ADE55545.1| conserved hypothetical protein [Coraliomargarita akajimensis DSM
           45221]
          Length = 314

 Score = 37.4 bits (85), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 4/56 (7%)

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR-SVRPDIAISSDFIVGFPGETDD 345
           L + ++S  D+ LK +NR H    Y+Q +D I  +   DI + +  I G PGE++D
Sbjct: 149 LEIGIESCYDQTLKRINRGHN---YQQAVDAIHLTAAHDIKVGTHMIFGLPGESED 201


>gi|302331204|gb|ADL21398.1| Coproporphyrinogen III oxidase [Corynebacterium pseudotuberculosis
           1002]
          Length = 384

 Score = 37.4 bits (85), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 36/145 (24%), Positives = 60/145 (41%), Gaps = 8/145 (5%)

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
           T S+P   S      H  L+     + L +QS S  +LK + R+HT            + 
Sbjct: 106 TESNPESTSPEFF--HSLLESGFTRVSLGMQSASSSVLKVLERKHTPGRAFAAAKEALAA 163

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-----NMLE 380
             +  ++ D I G P ET++D R T+  V   G     ++      GT  +       L 
Sbjct: 164 GFN-HVNLDMIYGTPTETNEDVRETLSRVVDTGVDHVSAYSLIVEDGTAMARKVRRGELP 222

Query: 381 QVDENVKAERLLCLQKKLREQQVSF 405
             DE+  A+R   + + LR++  S+
Sbjct: 223 PPDEDTYADRYWMIDQALRQEGFSW 247


>gi|257126657|ref|YP_003164771.1| coproporphyrinogen III oxidase [Leptotrichia buccalis C-1013-b]
 gi|257050596|gb|ACV39780.1| Coproporphyrinogen dehydrogenase [Leptotrichia buccalis C-1013-b]
          Length = 507

 Score = 37.4 bits (85), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 11/83 (13%)

Query: 276 CLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA--ISS 333
            +IK++G     +  + +  QS +++ LK +NR H     R+  D +  +  ++   I+ 
Sbjct: 290 TIIKSYG-----INKISINPQSFNEKTLKLVNRYHN----REQFDNVYKLAKNLGLEINM 340

Query: 334 DFIVGFPGETDDDFRATMDLVDK 356
           D I+G P ET +D   TMD + K
Sbjct: 341 DLILGLPRETTEDILYTMDEISK 363


>gi|206559438|ref|YP_002230199.1| radical SAM superfamily protein [Burkholderia cenocepacia J2315]
 gi|198035476|emb|CAR51354.1| radical SAM superfamily protein [Burkholderia cenocepacia J2315]
          Length = 473

 Score = 37.4 bits (85), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 54/211 (25%), Positives = 88/211 (41%), Gaps = 35/211 (16%)

Query: 185 GCDKFCTFCVVPYTRGIEI--SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG 242
           GC   CTFC+ P T       +RS+  V+ EA+ + DN + E+  L           +  
Sbjct: 205 GCKSRCTFCLWPQTVSGHRYRTRSVENVLAEAKWIRDN-MPEVKEL-----------MFD 252

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL-------MPYLHLPV 295
           +     DL  + +   GL +L  T S       C  KA+     L       +  L +  
Sbjct: 253 DDTFTDDLPRAEAIAIGLGKLGITWS-------CNAKANVPYKTLKVMKENGLRLLLVGF 305

Query: 296 QSGSDRILKSMNRR-HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           +SG D+IL ++ +   T +  R   D     +  I I   FI+G PGET +  + T++  
Sbjct: 306 ESGDDQILVNIKKGVRTDFARRFSAD---CKKLGIKIHGTFILGLPGETQETIKKTIEYA 362

Query: 355 DKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            +I      + + S     PG+ + +Q  EN
Sbjct: 363 KEI---NPHTIQVSLAAPYPGTTLYKQAVEN 390


>gi|89101068|ref|ZP_01173907.1| coproporphyrinogen III oxidase [Bacillus sp. NRRL B-14911]
 gi|89084211|gb|EAR63373.1| coproporphyrinogen III oxidase [Bacillus sp. NRRL B-14911]
          Length = 356

 Score = 37.4 bits (85), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 3/85 (3%)

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
           ++P D+S+  +KA  D  V    L   VQ+ ++ +LK + R H A +    I+  +    
Sbjct: 72  ANPGDLSEDKLKALYDAGV--NRLSFGVQTFNEELLKRIGRTHRAKDVFASIELAKKTGF 129

Query: 328 DIAISSDFIVGFPGETDDDFRATMD 352
             +IS D I   PG+T  DF+ T+D
Sbjct: 130 S-SISVDLIYSLPGQTIADFKETLD 153


>gi|298376665|ref|ZP_06986620.1| Fe-S oxidoreductase [Bacteroides sp. 3_1_19]
 gi|298266543|gb|EFI08201.1| Fe-S oxidoreductase [Bacteroides sp. 3_1_19]
          Length = 485

 Score = 37.4 bits (85), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 55/245 (22%), Positives = 97/245 (39%), Gaps = 36/245 (14%)

Query: 185 GCDKFCTFCVVPYTRGIEI--SRSLSQVVDEARKLIDN--GVCEITLLGQNVNAWRGKGL 240
           GC   C FCV P T       +RS   VV E   +  N   V E+ +      A + + L
Sbjct: 217 GCPFRCNFCVYPQTMHGHAFRARSAENVVAEFEYIAANFPDVKEVVIEDDTFTANKKRVL 276

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY------LHLP 294
                   D+   L E K   RL++          C  +   DL+ ++        L +P
Sbjct: 277 --------DICRLLVEKKLNKRLKWL---------CNARVDLDLETMLAMKKAGCRLIIP 319

Query: 295 -VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
            ++SGS +IL ++ +      + Q +   +  +  + I + ++VG  GET +    T+ L
Sbjct: 320 GIESGSQQILDNIKKGTKVEYFYQYVANAK--KAGLLIHACYMVGNQGETRETMEETLRL 377

Query: 354 VDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACV 410
             ++    A   ++ P +  PG+   +   EN   E      CL        +S  D   
Sbjct: 378 ALRLNTDTA---QFFPLIPYPGTEAYQWARENNYIETDYEKYCLPDGTHNTVLSLPDLSA 434

Query: 411 GQIIE 415
           G++++
Sbjct: 435 GEMVD 439


>gi|256840843|ref|ZP_05546351.1| Fe-S oxidoreductase [Parabacteroides sp. D13]
 gi|256738115|gb|EEU51441.1| Fe-S oxidoreductase [Parabacteroides sp. D13]
          Length = 485

 Score = 37.4 bits (85), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 55/245 (22%), Positives = 97/245 (39%), Gaps = 36/245 (14%)

Query: 185 GCDKFCTFCVVPYTRGIEI--SRSLSQVVDEARKLIDN--GVCEITLLGQNVNAWRGKGL 240
           GC   C FCV P T       +RS   VV E   +  N   V E+ +      A + + L
Sbjct: 217 GCPFRCNFCVYPQTMHGHAFRARSAENVVAEFEYIAANFPDVKEVVIEDDTFTANKKRVL 276

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY------LHLP 294
                   D+   L E K   RL++          C  +   DL+ ++        L +P
Sbjct: 277 --------DICRLLVEKKLNKRLKWL---------CNARVDLDLETMLAMKKAGCRLIIP 319

Query: 295 -VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
            ++SGS +IL ++ +      + Q +   +  +  + I + ++VG  GET +    T+ L
Sbjct: 320 GIESGSQQILDNIKKGTKVEYFYQYVANAK--KAGLLIHACYMVGNQGETRETMEETLRL 377

Query: 354 VDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACV 410
             ++    A   ++ P +  PG+   +   EN   E      CL        +S  D   
Sbjct: 378 ALRLNTDTA---QFFPLIPYPGTEAYQWARENNYIETDYEKYCLPDGTHNTVLSLPDLSA 434

Query: 411 GQIIE 415
           G++++
Sbjct: 435 GEMVD 439


>gi|188582893|ref|YP_001926338.1| hopanoid biosynthesis associated radical SAM protein HpnJ
           [Methylobacterium populi BJ001]
 gi|179346391|gb|ACB81803.1| hopanoid biosynthesis associated radical SAM protein HpnJ
           [Methylobacterium populi BJ001]
          Length = 474

 Score = 37.4 bits (85), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 78/349 (22%), Positives = 132/349 (37%), Gaps = 36/349 (10%)

Query: 54  ERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAE 113
           E V   +D DL+VL+T     K+  K    L +  N K      G  + V  AG +AQA 
Sbjct: 61  EIVAQANDFDLVVLHTSVPSFKSDVKTVEAL-KAANPKLIAGLIGAKVAVDAAGSMAQAP 119

Query: 114 GEEILRRSPI---VNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGY 170
             +   R+     V  V        +  L  R   G  V + D  +    ++L  V   Y
Sbjct: 120 CIDFCARNEFDFTVKEVAEGVPMSEIKGLSYRDANGVVVHNEDREIMTDMDQLPFVTSVY 179

Query: 171 NR------------KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI--SRSLSQVVDEARK 216
            R            K    +F +   GC   CTFC+ P T G     +RS++ V++E + 
Sbjct: 180 KRDLEMEKYFIGYLKHPYISFYS-GRGCKSRCTFCLWPQTVGGHTYRTRSVAHVIEEIKY 238

Query: 217 LIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDC 276
            +     E     +          +  +    ++   L ++          + PR+    
Sbjct: 239 CMK----EFPQTKEFFFDDDTFTDNLPRA--EEIARELGKLGVTWSCNAKANVPRETLKV 292

Query: 277 LIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFI 336
           L + +G   +L+ Y     +SG+ +IL ++ +        +       +   IAI   FI
Sbjct: 293 L-RENGLRLLLVGY-----ESGNQKILNNIKKGMRVEVAEKFTKDCHDL--GIAIHGTFI 344

Query: 337 VGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
           VG PGET +  + T+    +I      + + S     PG+ + +Q  EN
Sbjct: 345 VGLPGETKETIQETIAFAKRI---NPHTIQVSLAAPYPGTFLYKQAVEN 390


>gi|170747406|ref|YP_001753666.1| hopanoid biosynthesis associated radical SAM protein HpnJ
           [Methylobacterium radiotolerans JCM 2831]
 gi|170653928|gb|ACB22983.1| hopanoid biosynthesis associated radical SAM protein HpnJ
           [Methylobacterium radiotolerans JCM 2831]
          Length = 477

 Score = 37.4 bits (85), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 78/358 (21%), Positives = 135/358 (37%), Gaps = 54/358 (15%)

Query: 54  ERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAE 113
           E V   +D DL+VL+T     K+  K    L +  N K      G  + V  AG +AQA 
Sbjct: 61  EIVAQANDFDLVVLHTSVPSFKSDVKTIEAL-KAANPKLIAGLIGAKVAVDAAGAMAQA- 118

Query: 114 GEEILRRSPIVNVVVGPQTYYRLPELLE------------RARFGKRVVDTDYSVEDKFE 161
                   P+V+     +  + + E+ E            R   G  V + D  +    +
Sbjct: 119 --------PVVDFCARNEFDFTVKEVAEGVPMSEIKGLSYRDANGVVVHNEDREIMTDMD 170

Query: 162 RLSIVDGGYNR------------KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI--SRSL 207
           +L  V   Y R            K    +F +   GC   CTFC+ P T G     +RS+
Sbjct: 171 QLPFVTSVYKRDLEMEKYFIGYLKHPYISFYS-GRGCKSRCTFCLWPQTVGGHTYRTRSV 229

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
           + V++E +  +     E     +          +  +    ++   L ++          
Sbjct: 230 AHVIEEIKYCLK----EFPQTKEFFFDDDTFTDNLPRA--EEIARELGKLGVTWSCNAKA 283

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
           + PR+    L K +G   +L+ Y     +SG+ +IL ++ +        +       +  
Sbjct: 284 NVPRETLKVL-KENGLRLLLVGY-----ESGNQQILHNIKKGMRVEVAEKFTKDCHDL-- 335

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            IAI   FI+G PGET +  + T+    +I      + + S     PG+ + +Q  EN
Sbjct: 336 GIAIHGTFILGLPGETKETIQETIAFAKRI---NPHTIQVSLAAPYPGTFLYKQAVEN 390


>gi|282896103|ref|ZP_06304129.1| Radical SAM [Raphidiopsis brookii D9]
 gi|281199021|gb|EFA73896.1| Radical SAM [Raphidiopsis brookii D9]
          Length = 546

 Score = 37.4 bits (85), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 55/235 (23%), Positives = 100/235 (42%), Gaps = 36/235 (15%)

Query: 185 GCDKFCTFCVVPYT----RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL 240
            C + C FC+  Y     R   +  SL   +++  K+ +     + LLG +V        
Sbjct: 233 SCPEMCRFCLASYLTLPFRTASLEGSLIPAIEQGLKITN----RLGLLGASVT------- 281

Query: 241 DGEKCTFSDLLYSLSEIK-GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
             +   FS+LL  +S+ +   VRL   +     ++  L       D     L + V+SGS
Sbjct: 282 --QHPEFSNLLDYISQPQYDNVRLSVASVRTNTVTQKLAHTLAKRDCHS--LTIAVESGS 337

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPD--IAISSDFIVGFPGETDDDFRATMDLVDKI 357
           +++ + +N++    + ++II    + +     A+    +VG PGE  +D  AT+ ++  I
Sbjct: 338 EKLRQIINKK---LDNQEIIQAAINAKAGGLSALKLYSMVGVPGEEPEDLDATVTMMTDI 394

Query: 358 GYAQA------FSFKYSPRLGTPGSNMLEQVDENVKAE-RLLCLQKKLREQQVSF 405
             A            + P+  TP     +    N  AE +L  LQK+L+ Q + F
Sbjct: 395 KKATPGLRLTLGCSTFVPKSHTP----FQWFGVNKSAEKKLQFLQKQLKPQGIDF 445


>gi|78065755|ref|YP_368524.1| radical SAM family protein [Burkholderia sp. 383]
 gi|77966500|gb|ABB07880.1| Radical SAM family protein [Burkholderia sp. 383]
          Length = 480

 Score = 37.4 bits (85), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 54/211 (25%), Positives = 88/211 (41%), Gaps = 35/211 (16%)

Query: 185 GCDKFCTFCVVPYTRGIEI--SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG 242
           GC   CTFC+ P T       +RS+  V+ EA+ + DN + E+  L           +  
Sbjct: 212 GCKSRCTFCLWPQTVSGHRYRTRSVENVLAEAKWIRDN-MPEVKEL-----------MFD 259

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL-------MPYLHLPV 295
           +     DL  + +   GL +L  T S       C  KA+     L       +  L +  
Sbjct: 260 DDTFTDDLPRAEAIAIGLGKLGMTWS-------CNAKANVPYKTLKVMKENGLRLLLVGF 312

Query: 296 QSGSDRILKSMNRR-HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           +SG D+IL ++ +   T +  R   D     +  I I   FI+G PGET +  + T++  
Sbjct: 313 ESGDDQILVNIKKGVRTDFARRFSAD---CKKLGIKIHGTFILGLPGETQETIKKTIEYA 369

Query: 355 DKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            +I      + + S     PG+ + +Q  EN
Sbjct: 370 KEI---NPHTIQVSLAAPYPGTTLYKQAVEN 397


>gi|172060108|ref|YP_001807760.1| hopanoid biosynthesis associated radical SAM protein HpnJ
           [Burkholderia ambifaria MC40-6]
 gi|171992625|gb|ACB63544.1| hopanoid biosynthesis associated radical SAM protein HpnJ
           [Burkholderia ambifaria MC40-6]
          Length = 473

 Score = 37.4 bits (85), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 54/211 (25%), Positives = 88/211 (41%), Gaps = 35/211 (16%)

Query: 185 GCDKFCTFCVVPYTRGIEI--SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG 242
           GC   CTFC+ P T       +RS+  V+ EA+ + DN + E+  L           +  
Sbjct: 205 GCKSRCTFCLWPQTVSGHRYRTRSVENVLAEAKWIRDN-MPEVKEL-----------MFD 252

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL-------MPYLHLPV 295
           +     DL  + +   GL +L  T S       C  KA+     L       +  L +  
Sbjct: 253 DDTFTDDLPRAEAIAIGLGKLGMTWS-------CNAKANVPYKTLKVMKENGLRLLLVGF 305

Query: 296 QSGSDRILKSMNRR-HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           +SG D+IL ++ +   T +  R   D     +  I I   FI+G PGET +  + T++  
Sbjct: 306 ESGDDQILVNIKKGVRTDFARRFSAD---CKKLGIKIHGTFILGLPGETQETIKKTIEYA 362

Query: 355 DKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            +I      + + S     PG+ + +Q  EN
Sbjct: 363 KEI---NPHTIQVSLAAPYPGTTLYKQAVEN 390


>gi|50842395|ref|YP_055622.1| coproporphyrinogen III oxidase [Propionibacterium acnes KPA171202]
 gi|282854145|ref|ZP_06263482.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Propionibacterium acnes J139]
 gi|50839997|gb|AAT82664.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Propionibacterium acnes KPA171202]
 gi|282583598|gb|EFB88978.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Propionibacterium acnes J139]
          Length = 393

 Score = 37.4 bits (85), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 54/115 (46%), Gaps = 6/115 (5%)

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
           L + +QS  + +L  ++RRH      ++    R V  D  +S D I G PGE  D +R +
Sbjct: 136 LSMGMQSADENVLTVLDRRHRPGRAVEMAQLARQVGFD-DVSLDLIFGAPGENRDSWRYS 194

Query: 351 MD--LVDKIGYAQAFSF--KYSPRL-GTPGSNMLEQVDENVKAERLLCLQKKLRE 400
           +D  L  +  +  A+S   +   RL G      L   DE+  A++ L  +K L E
Sbjct: 195 LDATLTAEPDHISAYSLIVEEGTRLAGRIRRGELPMTDEDDLADKYLLTEKILTE 249


>gi|330998446|ref|ZP_08322270.1| radical SAM domain protein [Paraprevotella xylaniphila YIT 11841]
 gi|329568552|gb|EGG50357.1| radical SAM domain protein [Paraprevotella xylaniphila YIT 11841]
          Length = 486

 Score = 37.4 bits (85), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 55/199 (27%), Positives = 93/199 (46%), Gaps = 28/199 (14%)

Query: 185 GCDKFCTFCVVPYTRGIEI--SRSLSQVVDEARKLIDN--GVCEITLLGQNVNAWRGKGL 240
           GC   C FCV P T    I  +RS   VV+E   + +N   V E+ +        + + L
Sbjct: 217 GCPFHCNFCVYPQTMHGHIFRARSAENVVNEFEYIAENFPDVKEVVIEDDTFTVNKKRVL 276

Query: 241 DGEKCTFSDLLYSLSEIKGL-VRLRYTTSHPRDM---SDCLIKAHGDLDVLMPYLHLPVQ 296
             E C   +LL +    KGL  RL++  +   ++   + C +K  G   +++P     ++
Sbjct: 277 --EIC---NLLIN----KGLNKRLKWLCNARVNLDYETMCAMKKAG-CRLIIP----GIE 322

Query: 297 SGSDRILKSMNRRHTAYE--YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           SGS +IL ++ ++ T  E  YR + D   + +  + I + ++VG  GET +    T++L 
Sbjct: 323 SGSQQILDNI-KKGTKVEQFYRYVSD---AKKAGLLIHACYMVGNCGETRETMNETLNLA 378

Query: 355 DKIGYAQAFSFKYSPRLGT 373
            K+    A  F   P  GT
Sbjct: 379 LKLNTDTAQFFPLIPYPGT 397


>gi|170703218|ref|ZP_02894022.1| hopanoid biosynthesis associated radical SAM protein HpnJ
           [Burkholderia ambifaria IOP40-10]
 gi|170131868|gb|EDT00392.1| hopanoid biosynthesis associated radical SAM protein HpnJ
           [Burkholderia ambifaria IOP40-10]
          Length = 473

 Score = 37.4 bits (85), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 54/211 (25%), Positives = 88/211 (41%), Gaps = 35/211 (16%)

Query: 185 GCDKFCTFCVVPYTRGIEI--SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG 242
           GC   CTFC+ P T       +RS+  V+ EA+ + DN + E+  L           +  
Sbjct: 205 GCKSRCTFCLWPQTVSGHRYRTRSVENVLAEAKWIRDN-MPEVKEL-----------MFD 252

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL-------MPYLHLPV 295
           +     DL  + +   GL +L  T S       C  KA+     L       +  L +  
Sbjct: 253 DDTFTDDLPRAEAIAIGLGKLGMTWS-------CNAKANVPYKTLKVMKENGLRLLLVGF 305

Query: 296 QSGSDRILKSMNRR-HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           +SG D+IL ++ +   T +  R   D     +  I I   FI+G PGET +  + T++  
Sbjct: 306 ESGDDQILVNIKKGVRTDFARRFSAD---CKKLGIKIHGTFILGLPGETQETIKKTIEYA 362

Query: 355 DKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            +I      + + S     PG+ + +Q  EN
Sbjct: 363 KEI---NPHTIQVSLAAPYPGTTLYKQAVEN 390


>gi|78187522|ref|YP_375565.1| Elongator protein 3/MiaB/NifB [Chlorobium luteolum DSM 273]
 gi|78167424|gb|ABB24522.1| Elongator protein 3/MiaB/NifB [Chlorobium luteolum DSM 273]
          Length = 612

 Score = 37.4 bits (85), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 75/308 (24%), Positives = 113/308 (36%), Gaps = 40/308 (12%)

Query: 90  LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVV---GPQTYYRLPELLERARF- 145
           L+ +RI       VVV G    A   E+LR  P ++ VV   G +T+  L       R  
Sbjct: 84  LRLARIAREAGAFVVVGGFHPTALATEVLR-EPDIDAVVKGEGEETFRELVLHGPSERIA 142

Query: 146 GKRVVDTDYSVEDK------------FERLSIVDGGYNRKRGVTAFLTI--QEGCDKFCT 191
           G    D    VE+             F   S+  G Y       +  TI    GC   C+
Sbjct: 143 GLAFRDGGTVVENAPRPVIRDIDSIAFPLRSLRPGRYGEHGSAYSIDTIYTSRGCPWSCS 202

Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT--FSD 249
           FC      G   +RS   VV+E   L D  + ++      +  W    L   K      D
Sbjct: 203 FCANGQMHGKWRARSAENVVEEIALLHDQKMKKL------LKIWDANFLTSIKRAERICD 256

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL----MPYLHLPVQSGSDRILKS 305
           L+      +GL   R  T      +  L++A   L  L    +  + + ++S +   L+ 
Sbjct: 257 LMIE----RGLTNFRIMTE---TRAADLVRAERILPKLKAVGLNKVGIGIESPNPETLRL 309

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           +N+++TA +  + I   R     I     FI+G   ET  + R        IG  QA   
Sbjct: 310 LNKQNTADDVEKAIALCRKY--GIGTEGYFILGSLNETASESRTYPAYARSIGLQQALFM 367

Query: 366 KYSPRLGT 373
             +P  GT
Sbjct: 368 VMTPYPGT 375


>gi|314923123|gb|EFS86954.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Propionibacterium acnes HL001PA1]
 gi|314966890|gb|EFT10989.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Propionibacterium acnes HL082PA2]
 gi|314981234|gb|EFT25328.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Propionibacterium acnes HL110PA3]
 gi|315091802|gb|EFT63778.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Propionibacterium acnes HL110PA4]
 gi|315093189|gb|EFT65165.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Propionibacterium acnes HL060PA1]
 gi|315103305|gb|EFT75281.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Propionibacterium acnes HL050PA2]
 gi|315105512|gb|EFT77488.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Propionibacterium acnes HL030PA1]
 gi|327327714|gb|EGE69490.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Propionibacterium acnes HL103PA1]
          Length = 397

 Score = 37.4 bits (85), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 54/115 (46%), Gaps = 6/115 (5%)

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
           L + +QS  + +L  ++RRH      ++    R V  D  +S D I G PGE  D +R +
Sbjct: 140 LSMGMQSADENVLTVLDRRHRPGRAVEMAQLARQVGFD-DVSLDLIFGAPGENRDSWRYS 198

Query: 351 MD--LVDKIGYAQAFSF--KYSPRL-GTPGSNMLEQVDENVKAERLLCLQKKLRE 400
           +D  L  +  +  A+S   +   RL G      L   DE+  A++ L  +K L E
Sbjct: 199 LDATLTAEPDHISAYSLIVEEGTRLAGRIRRGELPMTDEDDLADKYLLTEKILTE 253


>gi|190410011|ref|YP_001965535.1| probable coenzyme B12-binding/radical SAM [Sinorhizobium meliloti]
 gi|125631041|gb|ABN47042.1| probable coenzyme B12-binding/radical SAM [Sinorhizobium meliloti
           SM11]
          Length = 681

 Score = 37.4 bits (85), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 4/83 (4%)

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIR-SVRPDIAISSDFIVGFPGETDDDFRATMDL 353
           ++SGS   L  MN+R    + + I++ ++ +V   I  S   +VG P E+  D  ATM L
Sbjct: 330 IESGSHETLSRMNKRAKVSDPQDIVELVKQTVDAGIFPSLSMVVGTPEESLADLDATMAL 389

Query: 354 V---DKIGYAQAFSFKYSPRLGT 373
                ++G   AF    SP  GT
Sbjct: 390 AYRFQQLGSVNAFIQLMSPLPGT 412


>gi|298530186|ref|ZP_07017588.1| Radical SAM domain protein [Desulfonatronospira thiodismutans
           ASO3-1]
 gi|298509560|gb|EFI33464.1| Radical SAM domain protein [Desulfonatronospira thiodismutans
           ASO3-1]
          Length = 455

 Score = 37.4 bits (85), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 53/216 (24%), Positives = 87/216 (40%), Gaps = 28/216 (12%)

Query: 170 YNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLI-DNGVCEITL 227
           YN++ G+    T + GC   C +C  P   G  + +R   +VV++  KL  D+GV  I  
Sbjct: 175 YNKESGLPGLQT-KRGCPHSCVYCSYPSLEGPFLRARHPEEVVEDVAKLSRDHGVEHIFF 233

Query: 228 LGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR-YTTSHPRDMSDCLIKAHGDLDV 286
                N  RG  L+        L  +L+     VR   +    P    D  +  H  L  
Sbjct: 234 TDSVFNDCRGHYLE--------LALALARRNLPVRWSAFFRPDPIRDDDLDLLLHSGL-- 283

Query: 287 LMPYLHLPVQSGSDR----ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGE 342
                 L ++ GSD      L+ + +   + +  +       VR  I ++  FI+G P E
Sbjct: 284 ------LGMEVGSDSCAEPTLEGLGKGFCSSDVLRF--NAACVRRGIPVAHYFIIGGPNE 335

Query: 343 TDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           T+   R T+  + K+      +F YS     PG+ +
Sbjct: 336 TEATIRETLSNIGKL--EDCVAFVYSGLRILPGTKL 369


>gi|330991809|ref|ZP_08315758.1| Putative methyltransferase [Gluconacetobacter sp. SXCC-1]
 gi|329760830|gb|EGG77325.1| Putative methyltransferase [Gluconacetobacter sp. SXCC-1]
          Length = 474

 Score = 37.0 bits (84), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 76/326 (23%), Positives = 126/326 (38%), Gaps = 62/326 (19%)

Query: 92  NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE---------- 141
           N ++K G      + G     + EE L  +P V+ V   +  + + E+ E          
Sbjct: 96  NPKVKIG------MVGAKVAVQPEESLLNAPPVDFVARNEFDFTIKEMAEGRDWKDVDGI 149

Query: 142 --RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAF-----------LTIQEGCDK 188
             R   GK V + D ++ +  + L  V   Y R   +  +           +    GC  
Sbjct: 150 SWRDGDGKIVHNRDRAMIEDMDSLPFVTEVYKRDLKIEDYFIGYLMHPYISIYTGRGCKS 209

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS 248
            CTFC+ P T G    R+ S          ++   EI L  Q     + +    +     
Sbjct: 210 RCTFCLWPQTVGGHHYRTRSP---------EHVAAEIRLAKQYFPQVK-EFFFDDDTFTD 259

Query: 249 DLLYSLSEIKGLVRLRYTTS------HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
           DL  + +  K L +L  T S       PR   + L KA+G   +L+ Y     +SG+ +I
Sbjct: 260 DLPRAEAIAKELGKLGVTWSCNAKANVPRKTLEVL-KANGLRLLLVGY-----ESGNQQI 313

Query: 303 LKSMN---RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
           L ++    R  TA E+ +    +      I I   FI+G PGET +  + T+    +I  
Sbjct: 314 LHNIKKGMRVETAREFTKNCHEL-----GIKIHGTFILGLPGETKETIQETIRFATEI-- 366

Query: 360 AQAFSFKYSPRLGTPGSNMLEQVDEN 385
               + + S     PG+ + +Q  EN
Sbjct: 367 -NPHTLQVSLAAPYPGTFLHKQATEN 391


>gi|293373130|ref|ZP_06619494.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Bacteroides ovatus SD CMC 3f]
 gi|292631901|gb|EFF50515.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Bacteroides ovatus SD CMC 3f]
          Length = 454

 Score = 37.0 bits (84), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 21/79 (26%), Positives = 43/79 (54%), Gaps = 4/79 (5%)

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           +Q   + +LK++NRR +    ++I+  +R+      ++ DFI G P ++ D FR T++  
Sbjct: 167 IQDMKEEVLKAVNRRPSLLPLQEILQILRAS--GATVNFDFIYGLPLQSVDSFRKTIEQA 224

Query: 355 DKIGYAQAFSFKYS--PRL 371
             +   +  +F Y+  P+L
Sbjct: 225 SALRPDRLVTFSYAHLPKL 243


>gi|154505864|ref|ZP_02042602.1| hypothetical protein RUMGNA_03406 [Ruminococcus gnavus ATCC 29149]
 gi|153793882|gb|EDN76302.1| hypothetical protein RUMGNA_03406 [Ruminococcus gnavus ATCC 29149]
          Length = 476

 Score = 37.0 bits (84), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 33/128 (25%), Positives = 61/128 (47%), Gaps = 13/128 (10%)

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
           Q+   + L  + R+HT  + + I    R +  D  I+ D I G PGET +D R T+  ++
Sbjct: 273 QTMQQKTLDLVGRKHTVQDVKDIFHAARELGFD-NINMDLIAGLPGETAEDMRDTLCQIE 331

Query: 356 KIG----YAQAFSFKYSPRLGTP------GSNMLEQVDENVK-AERLLCLQKKL-REQQV 403
           ++        A + K + + G         S + + V+E+ + AER+  +   L R++ +
Sbjct: 332 ELSPDSLTVHALAIKRAAKFGQEQRKIDLHSEIEQMVEESARAAERMGLVPYYLYRQKNI 391

Query: 404 SFNDACVG 411
           + N   VG
Sbjct: 392 AGNFENVG 399


>gi|189499849|ref|YP_001959319.1| Radical SAM domain-containing protein [Chlorobium phaeobacteroides
           BS1]
 gi|189495290|gb|ACE03838.1| Radical SAM domain protein [Chlorobium phaeobacteroides BS1]
          Length = 681

 Score = 37.0 bits (84), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 53/206 (25%), Positives = 84/206 (40%), Gaps = 32/206 (15%)

Query: 185 GCDKFCTFCVVPYTRGIEIS-RSLSQVVDEARKL-IDNGVCEITLLGQNVNAWRGKGLDG 242
           GC   C FC   +  G     R    ++DEA  L    G   I LL  N+     K L  
Sbjct: 210 GCPFHCRFCSTSHFFGRAYRLRPFDTILDEASVLNTKFGFPRIALLHDNLFHSHRKLL-- 267

Query: 243 EKCTFSDLLYSLSEIKGL---VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
              +F     + S  +GL     LR  +  P    +  +   G   V      + V++GS
Sbjct: 268 ---SFCRKWKNDSRTEGLSWNCSLRADSISPEIAEE--LSNSGCESVF-----IGVETGS 317

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRS--VRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
            R+ + + +R    + RQ+ID +    VR  +A    F++GFP E  ++ R T+D   ++
Sbjct: 318 QRVQQVIEKRLKIDKVRQVIDSLHKYGVRTTVA----FMIGFPEERREEVRLTLDFYYEM 373

Query: 358 GYAQAFSFKYSPRLGTPGSNMLEQVD 383
                       RL +P  +ML  V+
Sbjct: 374 ---------LCRRLASPQIDMLSPVN 390


>gi|170291224|ref|YP_001738040.1| radical SAM domain-containing protein [Candidatus Korarchaeum
           cryptofilum OPF8]
 gi|170175304|gb|ACB08357.1| Radical SAM domain protein [Candidatus Korarchaeum cryptofilum
           OPF8]
          Length = 498

 Score = 37.0 bits (84), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 44/205 (21%), Positives = 82/205 (40%), Gaps = 29/205 (14%)

Query: 179 FLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK 238
            L I  GC   C FC + +     +   +++V +      D G  EI ++G +  + +  
Sbjct: 184 LLEISRGCGWGCRFCGMGWHWRPRLDAPMNEVREAIEYASDLGFREIFIIGSDAASSK-- 241

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPR------DMSDCLIKAHGDLDVLMPYLH 292
                     D L+ ++EI     L+ +T   R      ++ D +    G +  + P   
Sbjct: 242 -------AIKDTLWEIAEIG----LKASTPSIRADQVDVELLDLIRSTGGRMITIAP--- 287

Query: 293 LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352
              ++GSDR+   +N+R    E  +  +  R +     I   F++G P E + D   +  
Sbjct: 288 ---ETGSDRLKGIINKRIDNDEIIRTAEEARDMGMK-HIKLYFMIGLPFERESDVVESAK 343

Query: 353 LVDKIGY---AQAFSFKYSPRLGTP 374
           L  K+     A+     + P+ GTP
Sbjct: 344 LASKVNSILRAKVTLSVFVPKAGTP 368


>gi|38234293|ref|NP_940060.1| coproporphyrinogen III oxidase [Corynebacterium diphtheriae NCTC
           13129]
 gi|38200556|emb|CAE50251.1| Putative oxygen-independent coproporphyrinogen III oxidase
           [Corynebacterium diphtheriae]
          Length = 377

 Score = 37.0 bits (84), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 54/124 (43%), Gaps = 8/124 (6%)

Query: 284 LDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD-IAISSDFIVGFPGE 342
           LD     + L +QS S  +L+ + R+HT    R     + ++    + ++ D I G P E
Sbjct: 115 LDAGYNRISLGMQSASSSVLRVLERKHTPG--RAFDAALEAMNAGFLHVNLDMIYGTPTE 172

Query: 343 TDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-----NMLEQVDENVKAERLLCLQKK 397
           TDDD R T++     G     ++      GT  +       L   +E+V A+R   +   
Sbjct: 173 TDDDVRLTLERALDTGVDHISAYSLIVEDGTAMARKVHKGQLPPPNEDVYADRYGLIDTA 232

Query: 398 LREQ 401
           LR Q
Sbjct: 233 LRAQ 236


>gi|257463863|ref|ZP_05628249.1| coproporphyrinogen III oxidase [Fusobacterium sp. D12]
 gi|317061394|ref|ZP_07925879.1| oxygen-independent coproporphyrinogen III oxidase [Fusobacterium
           sp. D12]
 gi|313687070|gb|EFS23905.1| oxygen-independent coproporphyrinogen III oxidase [Fusobacterium
           sp. D12]
          Length = 460

 Score = 37.0 bits (84), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 29/122 (23%), Positives = 57/122 (46%), Gaps = 11/122 (9%)

Query: 284 LDVLMPY----LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGF 339
           L++L  Y    + L  QS  ++ LK +NR+     + ++    + +     I+ DFI+G 
Sbjct: 240 LEILKKYGVDRVSLNPQSFQEKTLKKVNRKFNRAHFEEVYQDCKKL--GFIINMDFILGL 297

Query: 340 PGETDDDFRATMDLVDKIGYA----QAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQ 395
           P E+ +D   +++ + K         + +FK + +L   GS   E++D     E +  L 
Sbjct: 298 PEESTEDMIDSLEQLKKFEVENITLHSLAFKRASKLAK-GSQEREKIDRKRLEESIASLM 356

Query: 396 KK 397
           K+
Sbjct: 357 KE 358


>gi|166365161|ref|YP_001657434.1| hypothetical protein MAE_24200 [Microcystis aeruginosa NIES-843]
 gi|166087534|dbj|BAG02242.1| hypothetical protein MAE_24200 [Microcystis aeruginosa NIES-843]
          Length = 533

 Score = 37.0 bits (84), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 61/249 (24%), Positives = 110/249 (44%), Gaps = 36/249 (14%)

Query: 186 CDKFCTFCVVPY------TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
           C + C FC+  Y      T  +E   SL   +++  K+ D     + LLG +V+      
Sbjct: 232 CPEMCRFCLASYLTLPFRTASLE---SLIPAIEKGLKVTDR----LGLLGASVSQ----- 279

Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
              E  T  D L+   + +G VRL   +     +++ L +     D     + + V+SGS
Sbjct: 280 -HPEFETLLDYLFQ-PKFEG-VRLSIASVRTNTVTEKLARILSQRDT--KSITIAVESGS 334

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
           DR+ + +N++    E  Q     ++      I    +VG PGE  +D  AT++++  +  
Sbjct: 335 DRLREIINKKLANDEIIQAAINAKAGGLK-GIKLYGMVGIPGEETEDIAATVEMLIALKK 393

Query: 360 AQA---FSF---KYSPRLGTPGSNMLEQVDENVKAE-RLLCLQKKLREQQVSFN-DACVG 411
           A +    SF    + P+  TP     +    N  AE RL  L+K+L +Q + F  ++   
Sbjct: 394 AASGLRISFGCSTFVPKSHTP----FQWFGVNKMAEKRLKYLEKQLGKQGIEFRPESYNW 449

Query: 412 QIIEVLIEK 420
            +I+ L+ +
Sbjct: 450 SVIQALLSR 458


>gi|253566285|ref|ZP_04843739.1| coproporphyrinogen III oxidase [Bacteroides sp. 3_2_5]
 gi|251945389|gb|EES85827.1| coproporphyrinogen III oxidase [Bacteroides sp. 3_2_5]
          Length = 377

 Score = 37.0 bits (84), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 37/124 (29%), Positives = 55/124 (44%), Gaps = 16/124 (12%)

Query: 288 MPY--LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDD 345
           +P+  + + +Q+  D  LK + RRH A +  + ++  R+      IS D I G PGET +
Sbjct: 109 LPFNRISMGIQTFDDTTLKLLKRRHNAAQAIRAVELCRA-HGFRNISIDLIYGLPGETTE 167

Query: 346 DFRATMDLVDKIG----YAQAFSFKYSPRLGTPGSNML-----EQVDENVKAERLLCLQK 396
             R   DL   I     +  A+   Y    GTP   ML     E+VDE+        L  
Sbjct: 168 --RWEKDLQQAIALDVEHISAYHLIYEE--GTPIYKMLQKHQVEEVDEDSSVRFFTLLID 223

Query: 397 KLRE 400
           +L E
Sbjct: 224 RLHE 227


>gi|296242228|ref|YP_003649715.1| radical SAM domain-containing protein [Thermosphaera aggregans DSM
           11486]
 gi|296094812|gb|ADG90763.1| Radical SAM domain protein [Thermosphaera aggregans DSM 11486]
          Length = 498

 Score = 37.0 bits (84), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 50/219 (22%), Positives = 91/219 (41%), Gaps = 34/219 (15%)

Query: 161 ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY--TRGIEISRSLSQVVDEARKLI 218
           + + I+ GG      V   + I  GC + C FC V     R I I +    +V E +  +
Sbjct: 200 DEIPIIRGG-----SVNGLVEIMRGCPRGCKFCSVTLRPLRFIPIDK----IVKEIQVNL 250

Query: 219 DNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLI 278
             GV    L  ++V  +     DG K     +L    E+  LV  + + +        L 
Sbjct: 251 SAGVKGTILHSEDVLLYHA---DGVKPRPEPILKLHEEVVKLVGDKGSFAWSHVSLSALK 307

Query: 279 KAHGDLDVLMPYLH--------------LPVQSGSDRILKSMNR----RHTAYEYRQII- 319
            A  +  ++   +H              + +++GS R+ K + R     +    +  I+ 
Sbjct: 308 YAEENYKLISRLMHEYLLTESRRFIGVEVGIETGSVRLAKEIMRGKSLPYPIENWPDIVE 367

Query: 320 DRIRSVRPDIAI-SSDFIVGFPGETDDDFRATMDLVDKI 357
           D  R +  +  I ++  I+GFPGET DD   T++L++++
Sbjct: 368 DAFRIMHENFIIPAATVILGFPGETGDDVVKTIELIERL 406


>gi|217077087|ref|YP_002334803.1| Fe-S oxidoreductase [Thermosipho africanus TCF52B]
 gi|217036940|gb|ACJ75462.1| Fe-S oxidoreductase [Thermosipho africanus TCF52B]
          Length = 518

 Score = 37.0 bits (84), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 4/74 (5%)

Query: 180 LTIQEGCDK--FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG 237
           + +  GC++  +CTFC  P      ISR +  +++E  KL  NGV     LG++ N    
Sbjct: 161 IEVSLGCERKTYCTFCSEPILHPKFISRPVKDIIEEVEKLYKNGVKAFR-LGRSANIL-A 218

Query: 238 KGLDGEKCTFSDLL 251
            GLD      + LL
Sbjct: 219 YGLDKNSNKINVLL 232


>gi|291561901|emb|CBL40704.1| Fe-S oxidoreductase [butyrate-producing bacterium SS3/4]
          Length = 617

 Score = 37.0 bits (84), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 38/174 (21%), Positives = 73/174 (41%), Gaps = 12/174 (6%)

Query: 185 GCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK 244
           GC   C++C+    + +   RSL  V+ E +  +D+ V ++  + +  N  R        
Sbjct: 193 GCPFSCSYCLSSIDKTVRF-RSLDLVLPELQFFLDHKVPQVKFVDRTFNCKRDH------ 245

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCL-IKAHGDLDVLMPYLHLPVQSGSDRIL 303
            T     Y +    G+    +  S   D+ D   ++  G +   +  L + VQS +   +
Sbjct: 246 -TLGIWRYLVEHDNGITNFHFEVS--ADIFDEEELELIGKMRPGLIQLEIGVQSTNPDTI 302

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
           K ++R     + +Q +DR+   R +     D I G P E  + F  + D V ++
Sbjct: 303 KEIHRHMDLVKLKQAVDRVYDYR-NTHQHLDLIAGLPYENYESFMRSFDDVYRM 355


>gi|220919111|ref|YP_002494415.1| Radical SAM domain protein [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219956965|gb|ACL67349.1| Radical SAM domain protein [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 573

 Score = 37.0 bits (84), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 52/196 (26%), Positives = 88/196 (44%), Gaps = 22/196 (11%)

Query: 174 RGV-TAFLTIQEGCDKFCTFCVV-------PYTRGIEISRSLSQVVDEARKLIDNGVCEI 225
           RGV  A L    GC   C+FC V       P  R    +RS   V DE + L D     +
Sbjct: 175 RGVGIASLVASRGCYYDCSFCSVQTFYGEPPGPR--RRTRSPGNVADEMQALHDGKGVRV 232

Query: 226 TLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL-VRLRYTTSHPRDM--SDCLIKAHG 282
            +   +  A RG    G    F+  L    E++ L  R+ +  S   D   +D L +  G
Sbjct: 233 FIFKDDDLATRGPRARGWIEAFAREL----EVRRLGRRIAWRISCRVDDLDADLLRRLRG 288

Query: 283 DLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGE 342
              V + +++L ++SGS++ L++ N+R T    R+ +  +R +R  +A    F++  P  
Sbjct: 289 ---VGLTWVYLGIESGSEQGLRTCNKRFTVDAVRRGVALLRRLR--LAFDYGFMLLDPDS 343

Query: 343 TDDDFRATMDLVDKIG 358
           T    R ++  ++ +G
Sbjct: 344 TFASVRESVGFLEDLG 359


>gi|221201391|ref|ZP_03574430.1| hopanoid biosynthesis associated radical SAM protein HpnJ
           [Burkholderia multivorans CGD2M]
 gi|221208871|ref|ZP_03581869.1| hopanoid biosynthesis associated radical SAM protein HpnJ
           [Burkholderia multivorans CGD2]
 gi|221214047|ref|ZP_03587020.1| hopanoid biosynthesis associated radical SAM protein HpnJ
           [Burkholderia multivorans CGD1]
 gi|221166224|gb|EED98697.1| hopanoid biosynthesis associated radical SAM protein HpnJ
           [Burkholderia multivorans CGD1]
 gi|221171327|gb|EEE03776.1| hopanoid biosynthesis associated radical SAM protein HpnJ
           [Burkholderia multivorans CGD2]
 gi|221178659|gb|EEE11067.1| hopanoid biosynthesis associated radical SAM protein HpnJ
           [Burkholderia multivorans CGD2M]
          Length = 473

 Score = 37.0 bits (84), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 54/211 (25%), Positives = 88/211 (41%), Gaps = 35/211 (16%)

Query: 185 GCDKFCTFCVVPYTRGIEI--SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG 242
           GC   CTFC+ P T       +RS+  V+ EA+ + DN + E+  L           +  
Sbjct: 205 GCKSRCTFCLWPQTVSGHRYRTRSVENVLAEAKWIRDN-MPEVKEL-----------MFD 252

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL-------MPYLHLPV 295
           +     DL  + +   GL +L  T S       C  KA+     L       +  L +  
Sbjct: 253 DDTFTDDLPRAEAIAIGLGKLGITWS-------CNAKANVPYKTLKVMKENGLRLLLVGF 305

Query: 296 QSGSDRILKSMNRR-HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           +SG D+IL ++ +   T +  R   D     +  I I   FI+G PGET +  + T++  
Sbjct: 306 ESGDDQILVNIKKGVRTDFARRFSAD---CKKLGIKIHGTFILGLPGETKETIKKTIEYA 362

Query: 355 DKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            +I      + + S     PG+ + +Q  EN
Sbjct: 363 KEI---NPHTIQVSLAAPYPGTTLYKQAIEN 390


>gi|303230760|ref|ZP_07317507.1| coproporphyrinogen dehydrogenase HemZ [Veillonella atypica
           ACS-049-V-Sch6]
 gi|302514520|gb|EFL56515.1| coproporphyrinogen dehydrogenase HemZ [Veillonella atypica
           ACS-049-V-Sch6]
          Length = 441

 Score = 37.0 bits (84), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 45/181 (24%), Positives = 72/181 (39%), Gaps = 24/181 (13%)

Query: 186 CDKFCTFCVVPY------TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
           C+  C +C  PY       R  E   +L   +D+ R+     +CE   L  N   + G G
Sbjct: 128 CETRCVYCSFPYGLYQEYHRQSEFIAALLDDIDDVRQ-----ICETYNLHTNT-LYMGGG 181

Query: 240 ----LDGEKCTFSDLLYSLSEI--KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHL 293
               L+ E   F  +L  LS +  KG     +T    R  S    K        +  + +
Sbjct: 182 TPTILNNED--FHHVLTGLSTLIPKGH---EFTVEAGRPDSITTEKIQSMQACHVNRISI 236

Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
             Q+  D IL+ + R H+A +   +   ++    D A++ DFI G PG+        MD 
Sbjct: 237 NPQTMDDTILRRIGRGHSAQDIDDMYQYVKK-HTDFAVNMDFIAGLPGQNIKHMVHNMDY 295

Query: 354 V 354
           +
Sbjct: 296 I 296


>gi|254245866|ref|ZP_04939187.1| Radical SAM family protein [Burkholderia cenocepacia PC184]
 gi|124870642|gb|EAY62358.1| Radical SAM family protein [Burkholderia cenocepacia PC184]
          Length = 480

 Score = 37.0 bits (84), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 55/217 (25%), Positives = 89/217 (41%), Gaps = 47/217 (21%)

Query: 185 GCDKFCTFCVVPYTRGIEI--SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG 242
           GC   CTFC+ P T       +RS+  V+ EA+ + DN + E+  L           +  
Sbjct: 212 GCKSRCTFCLWPQTVSGHRYRTRSVENVLAEAKWIRDN-MPEVKEL-----------MFD 259

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPV------- 295
           +     DL  + +   GL +L  T S       C  KA+      +PY  L +       
Sbjct: 260 DDTFTDDLPRAEAIAIGLGKLGITWS-------CNAKAN------VPYKSLKIMKENGLR 306

Query: 296 ------QSGSDRILKSMNRR-HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFR 348
                 +SG D+IL ++ +   T +  R   D     +  I I   FI+G PGET +  +
Sbjct: 307 LLLVGFESGDDQILVNIKKGVRTDFARRFSAD---CKKLGIKIHGTFILGLPGETQETIK 363

Query: 349 ATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            T++   +I      + + S     PG+ + +Q  EN
Sbjct: 364 KTIEYAKEI---NPHTIQVSLAAPYPGTTLYKQAVEN 397


>gi|332877454|ref|ZP_08445201.1| hypothetical protein HMPREF9074_00932 [Capnocytophaga sp. oral
           taxon 329 str. F0087]
 gi|332684560|gb|EGJ57410.1| hypothetical protein HMPREF9074_00932 [Capnocytophaga sp. oral
           taxon 329 str. F0087]
          Length = 307

 Score = 37.0 bits (84), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 33/123 (26%), Positives = 59/123 (47%), Gaps = 18/123 (14%)

Query: 177 TAFLTIQEGCDKFCTFCVVPYTRG-IEISRSLSQVVDEARK---LIDN-------GVCEI 225
           TA+  +  GC   C +CVVP   G I     + ++  E RK   L+DN       G+ +I
Sbjct: 99  TAYGFLTRGCPNKCKWCVVPKKEGNIRPYMDIEEIAIEGRKNIILMDNNILASDYGLSQI 158

Query: 226 -TLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDC-----LIK 279
             ++  N++    +GLD    T  D+   L+++K +  +R+    P+ + +C     LI+
Sbjct: 159 EKIIRLNLHVDFNQGLDARLVT-DDIAKLLAKVKWIKCIRFGCDTPKQIIECERATALIE 217

Query: 280 AHG 282
            +G
Sbjct: 218 KYG 220


>gi|315635461|ref|ZP_07890727.1| cfr family radical SAM enzyme [Arcobacter butzleri JV22]
 gi|315480219|gb|EFU70886.1| cfr family radical SAM enzyme [Arcobacter butzleri JV22]
          Length = 360

 Score = 37.0 bits (84), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 50/201 (24%), Positives = 81/201 (40%), Gaps = 13/201 (6%)

Query: 167 DGGYNRKRGVTAFLTIQEGCDKFCTFCVVP---YTRGIEISRSLSQVVDEARKLIDNGVC 223
           DG   R    T  ++ Q GC   C+FC+     + R + +   ++Q+V+  R   DN + 
Sbjct: 105 DGQIVRSEKYTVCISSQVGCKVGCSFCLTAKGGFVRNLTVGEYIAQIVNIKR---DNDIA 161

Query: 224 EITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV--RLRYTTSHPRDMSDCLIKAH 281
           E   L   V    G+ LD     F+  +   SE+ GL   R R T S     +   IK  
Sbjct: 162 ENKALNI-VYMGMGEPLDNFD-NFTKAVEIFSELDGLAISRRRQTVSTSGIATK--IKKL 217

Query: 282 GDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPG 341
           G+ D L   L + + +  D +   +   + AY    II+ +++   D      F      
Sbjct: 218 GEKD-LQIQLAISLHAVDDELRSELIPMNKAYNIASIIEAVKAFPVDTRKKVMFEYLVIK 276

Query: 342 ETDDDFRATMDLVDKIGYAQA 362
           + +D   A   LV  +   QA
Sbjct: 277 DKNDSIEAAKKLVSLLNGIQA 297


>gi|254468961|ref|ZP_05082367.1| Fe-S oxidoreductase [beta proteobacterium KB13]
 gi|207087771|gb|EDZ65054.1| Fe-S oxidoreductase [beta proteobacterium KB13]
          Length = 508

 Score = 37.0 bits (84), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 26/97 (26%), Positives = 53/97 (54%), Gaps = 6/97 (6%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR-PDIAISSDFIVGFPGETDDDFR 348
           +L L V++G+  + + +++   +++   I D  ++++  DI I S++I GFP +T D  +
Sbjct: 338 WLALGVEAGNQNVRQEVSK--GSFKEVNIRDVSKTIQNSDINIISNYIFGFPEDTFDTMQ 395

Query: 349 ATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            T+DL  ++    A  +   P    PGS M ++  +N
Sbjct: 396 ETLDLALELNTEMANMY---PCQALPGSPMYQKALQN 429


>gi|298207568|ref|YP_003715747.1| coproporphyrinogen III oxidase [Croceibacter atlanticus HTCC2559]
 gi|83850204|gb|EAP88072.1| coproporphyrinogen III oxidase [Croceibacter atlanticus HTCC2559]
          Length = 376

 Score = 37.0 bits (84), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 38/170 (22%), Positives = 74/170 (43%), Gaps = 19/170 (11%)

Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL-----------MPYLHLPVQSGS 299
           L S  E+  L+   YT  +  +  +  ++A+ D D+            +  L + +QS  
Sbjct: 63  LLSAEELNSLIETVYTNYNVSETPEITLEANPD-DLTKDKITELGKSKINRLSIGIQSFF 121

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
           +  LK MNR H A E  Q I+  ++   +I+I  D I G PG T   ++  +++  ++  
Sbjct: 122 EDDLKLMNRAHNAKEALQCIEFSKTEFDNISI--DLIYGVPGMTTQKWKENLNIALQLDI 179

Query: 360 AQAFSFKYSPRLGTPGSNMLEQ-----VDENVKAERLLCLQKKLREQQVS 404
               S+  +    T     +E+     VD+++  +    L + L++   S
Sbjct: 180 PHISSYALTVEPNTALKRFIEKGVVPPVDDDLAKQHFDILVETLQQAGYS 229


>gi|107022248|ref|YP_620575.1| radical SAM family protein [Burkholderia cenocepacia AU 1054]
 gi|116689193|ref|YP_834816.1| radical SAM domain-containing protein [Burkholderia cenocepacia
           HI2424]
 gi|170732497|ref|YP_001764444.1| hopanoid biosynthesis associated radical SAM protein HpnJ
           [Burkholderia cenocepacia MC0-3]
 gi|105892437|gb|ABF75602.1| Radical SAM [Burkholderia cenocepacia AU 1054]
 gi|116647282|gb|ABK07923.1| Radical SAM domain protein [Burkholderia cenocepacia HI2424]
 gi|169815739|gb|ACA90322.1| hopanoid biosynthesis associated radical SAM protein HpnJ
           [Burkholderia cenocepacia MC0-3]
          Length = 473

 Score = 37.0 bits (84), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 55/217 (25%), Positives = 89/217 (41%), Gaps = 47/217 (21%)

Query: 185 GCDKFCTFCVVPYTRGIEI--SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG 242
           GC   CTFC+ P T       +RS+  V+ EA+ + DN + E+  L           +  
Sbjct: 205 GCKSRCTFCLWPQTVSGHRYRTRSVENVLAEAKWIRDN-MPEVKEL-----------MFD 252

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPV------- 295
           +     DL  + +   GL +L  T S       C  KA+      +PY  L +       
Sbjct: 253 DDTFTDDLPRAEAIAIGLGKLGITWS-------CNAKAN------VPYKSLKIMKENGLR 299

Query: 296 ------QSGSDRILKSMNRR-HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFR 348
                 +SG D+IL ++ +   T +  R   D     +  I I   FI+G PGET +  +
Sbjct: 300 LLLVGFESGDDQILVNIKKGVRTDFARRFSAD---CKKLGIKIHGTFILGLPGETQETIK 356

Query: 349 ATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            T++   +I      + + S     PG+ + +Q  EN
Sbjct: 357 KTIEYAKEI---NPHTIQVSLAAPYPGTTLYKQAVEN 390


>gi|255323729|ref|ZP_05364857.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Corynebacterium tuberculostearicum SK141]
 gi|255299219|gb|EET78508.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Corynebacterium tuberculostearicum SK141]
          Length = 379

 Score = 37.0 bits (84), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 51/122 (41%), Gaps = 10/122 (8%)

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD--IAISSDFIVGFPGETDDDFR 348
           + L +QS S  +L+ + R HT     +  D  R  R      ++ D I G P ETDD+ R
Sbjct: 122 ISLGMQSASPGVLQVLERAHTP---GRAFDAAREARAAGFEHVNLDMIYGTPTETDDNVR 178

Query: 349 ATMDLVDKIGYAQAFSFKYSPRLGTP-----GSNMLEQVDENVKAERLLCLQKKLREQQV 403
            T+D V + G     ++      GT         +L   DE+V A R   +   L  +  
Sbjct: 179 ETLDRVLETGVDHVSAYSLIVEDGTRMARKVNKGILPAPDEDVLARRYEMISSTLESEGF 238

Query: 404 SF 405
            +
Sbjct: 239 EW 240


>gi|226311614|ref|YP_002771508.1| oxygen-independent coproporphyrinogen III oxidase [Brevibacillus
           brevis NBRC 100599]
 gi|226094562|dbj|BAH43004.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Brevibacillus brevis NBRC 100599]
          Length = 379

 Score = 36.6 bits (83), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 37/78 (47%), Gaps = 3/78 (3%)

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
           L   VQS  D +LK + R H      + ID  + V  D   S D + G P +T D FR T
Sbjct: 119 LSFGVQSFDDALLKRLGRIHDQEAVYRSIDNAKKVGFD-NFSIDLMFGLPDQTLDIFRQT 177

Query: 351 MDLVDKIG--YAQAFSFK 366
           +D    +G  +  A+S K
Sbjct: 178 LDKAFGLGTTHFSAYSLK 195


>gi|311748693|ref|ZP_07722478.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Algoriphagus sp. PR1]
 gi|311302818|gb|EAZ81474.2| putative oxygen-independent coproporphyrinogen III oxidase
           [Algoriphagus sp. PR1]
          Length = 373

 Score = 36.6 bits (83), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 53/115 (46%), Gaps = 6/115 (5%)

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
           L L +QS +  +LK  NR HT+ E  Q ID+ R +  +   S D I GFP +    +   
Sbjct: 113 LSLGIQSFNSDVLKFYNRAHTSEESIQAIDKARKMGFE-KFSLDLIYGFPYKDHSIWEQD 171

Query: 351 MDLVDKI--GYAQAFSFKYSPR--LGT-PGSNMLEQVDENVKAERLLCLQKKLRE 400
           +    +I  G+  +++    P+  LG           DE+  A++   LQ ++ +
Sbjct: 172 LSRAIQIDPGHISSYALTIEPKTALGNWEKKGKFSPADEDFIADQFEMLQSRMED 226


>gi|163852869|ref|YP_001640912.1| hopanoid biosynthesis associated radical SAM protein HpnJ
           [Methylobacterium extorquens PA1]
 gi|218531695|ref|YP_002422511.1| hopanoid biosynthesis associated radical SAM protein HpnJ
           [Methylobacterium chloromethanicum CM4]
 gi|240140197|ref|YP_002964674.1| Radical SAM superfamily protein [Methylobacterium extorquens AM1]
 gi|163664474|gb|ABY31841.1| hopanoid biosynthesis associated radical SAM protein HpnJ
           [Methylobacterium extorquens PA1]
 gi|218523998|gb|ACK84583.1| hopanoid biosynthesis associated radical SAM protein HpnJ
           [Methylobacterium chloromethanicum CM4]
 gi|240010171|gb|ACS41397.1| Radical SAM superfamily protein [Methylobacterium extorquens AM1]
          Length = 474

 Score = 36.6 bits (83), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 86/365 (23%), Positives = 139/365 (38%), Gaps = 68/365 (18%)

Query: 54  ERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLK-----NSRIKEG---GDLLVVV 105
           E V   +D DL+VL+T          V SF   ++ ++     N R+  G     + V  
Sbjct: 61  EIVAQANDFDLVVLHTS---------VPSFKSDVKTVEALKAANPRLIAGLIGAKVAVDA 111

Query: 106 AGCVAQAEGEEILRRSPI---VNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFER 162
           AG +AQA   +   R+     V  V        +  L  R   G  V + D  +    ++
Sbjct: 112 AGSMAQAPCIDFCARNEFDFTVKEVADGVPMSEIKGLSYRDANGVVVHNEDREIMTDMDQ 171

Query: 163 LSIVDGGYNR------------KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI--SRSLS 208
           L  V   Y R            K    +F +   GC   CTFC+ P T G     +RS++
Sbjct: 172 LPFVTSVYKRDLEMEKYFIGYLKHPYISFYS-GRGCKSRCTFCLWPQTVGGHTYRTRSVA 230

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI-KGLVRLRYTT 267
            V++E +  +                 + K    +  TF+D L    EI + L +L  T 
Sbjct: 231 HVIEEIKYCLKEFP-------------QTKEFFFDDDTFTDNLPRAEEIARELGKLGVTW 277

Query: 268 SHPRDMSDCLIKAHGDLDVL-------MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
           S       C  KA+   + L       +  L +  +SG+ +IL ++ +        +   
Sbjct: 278 S-------CNAKANVPYETLKVLKDNGLRLLLVGYESGNQQILNNIKKGMRVEVAEKFTK 330

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
               +   IAI   FIVG PGET +  + T+    +I      + + S     PG+ + +
Sbjct: 331 NCHEL--GIAIHGTFIVGLPGETKETIQETIAFAKRI---NPHTIQVSLAAPYPGTFLYK 385

Query: 381 QVDEN 385
           Q  EN
Sbjct: 386 QAVEN 390


>gi|134295201|ref|YP_001118936.1| radical SAM domain-containing protein [Burkholderia vietnamiensis
           G4]
 gi|134138358|gb|ABO54101.1| Radical SAM domain protein [Burkholderia vietnamiensis G4]
          Length = 473

 Score = 36.6 bits (83), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 55/217 (25%), Positives = 89/217 (41%), Gaps = 47/217 (21%)

Query: 185 GCDKFCTFCVVPYTRGIEI--SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG 242
           GC   CTFC+ P T       +RS+  V+ EA+ + DN + E+  L           +  
Sbjct: 205 GCKSRCTFCLWPQTVSGHRYRTRSVENVLAEAKWIRDN-MPEVKEL-----------MFD 252

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPV------- 295
           +     DL  + +   GL +L  T S       C  KA+      +PY  L +       
Sbjct: 253 DDTFTDDLPRAEAIAIGLGKLGMTWS-------CNAKAN------VPYKSLKIMKENGLR 299

Query: 296 ------QSGSDRILKSMNRR-HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFR 348
                 +SG D+IL ++ +   T +  R   D     +  I I   FI+G PGET +  +
Sbjct: 300 LLLVGFESGDDQILVNIKKGVRTDFARRFSAD---CKKLGIKIHGTFILGLPGETPETIK 356

Query: 349 ATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            T++   +I      + + S     PG+ + +Q  EN
Sbjct: 357 KTIEYAKEI---NPHTIQVSLAAPYPGTTLYKQAVEN 390


>gi|288929078|ref|ZP_06422924.1| oxygen-independent coproporphyrinogen III oxidase [Prevotella sp.
           oral taxon 317 str. F0108]
 gi|288330062|gb|EFC68647.1| oxygen-independent coproporphyrinogen III oxidase [Prevotella sp.
           oral taxon 317 str. F0108]
          Length = 455

 Score = 36.6 bits (83), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 2/76 (2%)

Query: 293 LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352
           L +Q   + +L+++NRR +      I++R+R  +    ++ DFI G PG+T   F  T+ 
Sbjct: 166 LGIQDFDENVLRTVNRRPSLLPVEHIVERLR--QSGAKVNLDFIYGLPGQTVQSFARTIA 223

Query: 353 LVDKIGYAQAFSFKYS 368
               +   +  +F Y+
Sbjct: 224 RAIDMRPNRLVTFSYA 239


>gi|253701133|ref|YP_003022322.1| radical SAM protein [Geobacter sp. M21]
 gi|251775983|gb|ACT18564.1| Radical SAM domain protein [Geobacter sp. M21]
          Length = 424

 Score = 36.6 bits (83), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 2/67 (2%)

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
           + L  +SGS  ILKS+N+++   + R+  + +R  R  IA     + G PGET +  + +
Sbjct: 294 VSLGFESGSPLILKSLNKKYDLDQVREASELLR--RHGIARMGFLMFGAPGETRETVQES 351

Query: 351 MDLVDKI 357
           +D  D +
Sbjct: 352 LDFADSL 358


>gi|15668448|ref|NP_247246.1| hypothetical protein MJ_0274 [Methanocaldococcus jannaschii DSM
           2661]
 gi|3219888|sp|Q57722|Y274_METJA RecName: Full=Uncharacterized protein MJ0274
 gi|1590999|gb|AAB98258.1| conserved hypothetical protein [Methanocaldococcus jannaschii DSM
           2661]
          Length = 543

 Score = 36.6 bits (83), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 66/338 (19%), Positives = 140/338 (41%), Gaps = 56/338 (16%)

Query: 176 VTAFLTIQEGCDKF----CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQN 231
           + A +    GC +     C+FC  P   G+   R    ++DE + L + G+ +   +G+ 
Sbjct: 207 IIAEIETYRGCPRALTGGCSFCTEPRRFGLPKFRDEKDIIDEIKVLYNEGI-KYFRIGRQ 265

Query: 232 VNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPR-----DMSDCLIKAHGD--- 283
              +  K +D EK        ++  I+ L +     S+P+     + +  +I  H D   
Sbjct: 266 PCMFSYKSIDSEKEEVPKP--NVEAIEKLFKGIRNVSNPKVLHIDNANPAVIARHEDESR 323

Query: 284 --LDVLMPY------LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV--------RP 327
               +L+ Y          V+S  ++++K+ N   T  +  + ++ +  V         P
Sbjct: 324 EVAKILVKYCTSGNVAAFGVESFDEKVIKANNLLTTPEDVLKAVEILNEVGGKRGETGLP 383

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK------YSPRLGTPGSNMLEQ 381
            +    + + G  GE  + F    + + +I Y + F  +        P  GT     L+ 
Sbjct: 384 YLLPGINLLFGLKGERKETFTINFEYLKEI-YDRGFMIRRINIRQVVPFFGT--DITLKD 440

Query: 382 VDENVKAERL-LCLQKKLREQQVSFNDACVGQII-------EVLIEKHGKEK---GKLVG 430
           + +  K ++L L  ++K+RE+    ++  + +++       +V +E   +E    G+  G
Sbjct: 441 IKKAEKRKKLFLWFKEKVREE---IDNKMLKRVVPKGTILRDVFVEVKEREDLYFGRQFG 497

Query: 431 RSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
             P L  ++   KN  IG+ + V + D    ++ G++V
Sbjct: 498 SYPLLVGIL--DKNLKIGEFVDVEVVDYGRRSITGKVV 533


>gi|160893488|ref|ZP_02074273.1| hypothetical protein CLOL250_01039 [Clostridium sp. L2-50]
 gi|156864883|gb|EDO58314.1| hypothetical protein CLOL250_01039 [Clostridium sp. L2-50]
          Length = 497

 Score = 36.6 bits (83), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 54/119 (45%), Gaps = 16/119 (13%)

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDC-----LIKAHGDLDVLMPYLHLPVQSGS 299
           C+  +  + LS+++      YT    R  S       ++KAHG     +  + +  Q+ +
Sbjct: 244 CSMIEKHFDLSQVR-----EYTIEAGRPDSTTADKLQVMKAHG-----VGRISINPQTMN 293

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
              LK + R HT  +  +   R R V  D  I+ D IVG PGE  +  + T++ V K+ 
Sbjct: 294 GETLKLIGRAHTPEQAEEAFKRAREVGFD-NINMDLIVGLPGEDAEMVKRTLEKVKKLA 351


>gi|295099654|emb|CBK88743.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Eubacterium cylindroides T2-87]
          Length = 357

 Score = 36.6 bits (83), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 29/107 (27%), Positives = 57/107 (53%), Gaps = 6/107 (5%)

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
           + L VQ+ +DR+LK +NR+H   +  Q+I  ++    D  IS D +   P ++ +D +  
Sbjct: 105 ISLGVQTFNDRLLKVINRKHRKEDIFQVIQLLKENGID-NISIDLMYALPEQSLEDIKKD 163

Query: 351 MDL-VD-KIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAE--RLLC 393
           +++ +D  I +   +S +        G   L+ VDE+++A+   L+C
Sbjct: 164 LEIFLDLDIKHLSIYSLQIEEN-SIFGRQNLKPVDEDIEADMYELIC 209


>gi|47220778|emb|CAF99985.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 253

 Score = 36.6 bits (83), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 69/170 (40%), Gaps = 24/170 (14%)

Query: 67  LNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGE-EILRRSPIVN 125
           L  C + +K   +     G  R L   R  +     VV+AGCV QA+   + L+   I+ 
Sbjct: 68  LAHCQLSQKTVGE--QLRGYRRRLSKDRKAQEQQKKVVLAGCVPQAQPRMDYLKGLSIIG 125

Query: 126 VVVGPQTYYRLPELLERARFGKRVV--DTDYSVEDKFERLSIV----DGGYN-------- 171
           V    Q   R+ E+++ A   +R     T Y   D    + ++    DGG          
Sbjct: 126 V----QQIDRVVEVVDEAIKDQRARTRHTTYETCDAGHSVRLLGQKKDGGRRLGGARLDL 181

Query: 172 ---RKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLI 218
              RK  +   ++I  GC   CT+C   + RG   S  + ++V+  R+  
Sbjct: 182 PKIRKNPLIEIISINTGCLNACTYCKTKHARGDLASYPVEELVERTRQFF 231


>gi|288916977|ref|ZP_06411349.1| oxygen-independent coproporphyrinogen III oxidase [Frankia sp.
           EUN1f]
 gi|288351686|gb|EFC85891.1| oxygen-independent coproporphyrinogen III oxidase [Frankia sp.
           EUN1f]
          Length = 409

 Score = 36.6 bits (83), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 25/103 (24%), Positives = 52/103 (50%), Gaps = 6/103 (5%)

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           +QS    +L +++R+HT     +++   R    +  +S D I G PGE++ D+ A+++ V
Sbjct: 155 MQSARPHVLAALDRQHTPGRVAEVVGWARQAGFE-QLSLDLIYGAPGESEADWAASLEAV 213

Query: 355 DKIGYAQAFSFKYSPRLGTPGS-----NMLEQVDENVKAERLL 392
            ++      ++  +   GT  S       L + D+++ A+R L
Sbjct: 214 IELAPNHVSAYSLTVEEGTKLSRRVRRGELLEPDDDLLADRYL 256


>gi|289425685|ref|ZP_06427456.1| coproporphyrinogen III oxidase domain protein [Propionibacterium
           acnes SK187]
 gi|289153904|gb|EFD02598.1| coproporphyrinogen III oxidase domain protein [Propionibacterium
           acnes SK187]
          Length = 117

 Score = 36.6 bits (83), Expect = 9.5,   Method: Composition-based stats.
 Identities = 32/114 (28%), Positives = 48/114 (42%), Gaps = 10/114 (8%)

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD--IAISSDFIVGFPGETDDDFRATMD 352
           +QS S  +L+ + R HT     +  D  R  R      ++ D I G P ETDD+ R T+D
Sbjct: 1   MQSASPGVLQVLERAHTP---GRAFDAAREARAAGFEHVNLDMIYGTPTETDDNVRETLD 57

Query: 353 LVDKIGYAQAFSFKYSPRLGTP-----GSNMLEQVDENVKAERLLCLQKKLREQ 401
            V + G     ++      GT         +L   DE+V A R   +   L  +
Sbjct: 58  RVLETGVDHVSAYSLIVEDGTRMARKVNKGILPAPDEDVLARRYEMISSTLESE 111


>gi|260891520|ref|ZP_05902783.1| oxygen-independent coproporphyrinogen III oxidase 2 [Leptotrichia
           hofstadii F0254]
 gi|260858903|gb|EEX73403.1| oxygen-independent coproporphyrinogen III oxidase 2 [Leptotrichia
           hofstadii F0254]
          Length = 507

 Score = 36.6 bits (83), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 11/83 (13%)

Query: 276 CLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA--ISS 333
            +IK++G     +  + +  QS +++ LK +NR H     R+  D +  +  ++   I+ 
Sbjct: 290 AIIKSYG-----INKISINPQSFNEKTLKLVNRYHD----REQFDNVYKLAKNLGLEINM 340

Query: 334 DFIVGFPGETDDDFRATMDLVDK 356
           D I+G P ET +D   TMD + K
Sbjct: 341 DLILGLPRETTEDILYTMDEISK 363


>gi|149204321|ref|ZP_01881288.1| Radical SAM [Roseovarius sp. TM1035]
 gi|149142206|gb|EDM30253.1| Radical SAM [Roseovarius sp. TM1035]
          Length = 509

 Score = 36.6 bits (83), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 38/182 (20%), Positives = 83/182 (45%), Gaps = 19/182 (10%)

Query: 170 YNRKRGVTAFLTIQEGCDKFCTFC-VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLL 228
           Y  +R VT  +    GC   C FC V+ Y    +  +   +V++E + L D+G   I+L 
Sbjct: 159 YRNERVVTGVIQTSRGCPFECHFCDVIQYLGRTQRHKPPEKVIEECQLLYDHGYRNISLS 218

Query: 229 GQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLM 288
             N   +R +  +       ++L + +   G   ++++T    D++    +  G +D+  
Sbjct: 219 DDNFTVYRKRTRE-----LLEVLAAWNGRDGREPVQFSTQASIDIA----RDQGIMDLCN 269

Query: 289 PY----LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS-VRPDIAISSDFIVGFPGET 343
                 + + +++ SD  L+   +R    +   ++ + ++ V   I +SS  ++GF  ++
Sbjct: 270 EAGVRDIFIGIETNSDEALQESKKRQNLKQ--DLVKQTQTVVESGIVVSSGMMIGF--DS 325

Query: 344 DD 345
           DD
Sbjct: 326 DD 327


>gi|254562634|ref|YP_003069729.1| Radical SAM superfamily protein [Methylobacterium extorquens DM4]
 gi|254269912|emb|CAX25890.1| Radical SAM superfamily protein [Methylobacterium extorquens DM4]
          Length = 474

 Score = 36.6 bits (83), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 86/365 (23%), Positives = 139/365 (38%), Gaps = 68/365 (18%)

Query: 54  ERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLK-----NSRIKEG---GDLLVVV 105
           E V   +D DL+VL+T          V SF   ++ ++     N R+  G     + V  
Sbjct: 61  EIVAQANDFDLVVLHTS---------VPSFKSDVKTVEALKAANPRLIAGLIGAKVAVDA 111

Query: 106 AGCVAQAEGEEILRRSPI---VNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFER 162
           AG +AQA   +   R+     V  V        +  L  R   G  V + D  +    ++
Sbjct: 112 AGSMAQAPCIDFCARNEFDFTVKEVADGVPMSEIKGLSYRDANGVVVHNEDREIMADMDQ 171

Query: 163 LSIVDGGYNR------------KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI--SRSLS 208
           L  V   Y R            K    +F +   GC   CTFC+ P T G     +RS++
Sbjct: 172 LPFVTSVYKRDLEMEKYFIGYLKHPYISFYS-GRGCKSRCTFCLWPQTVGGHTYRTRSVA 230

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI-KGLVRLRYTT 267
            V++E +  +                 + K    +  TF+D L    EI + L +L  T 
Sbjct: 231 HVIEEIKYCLKEFP-------------QTKEFFFDDDTFTDNLPRAEEIARELGKLGVTW 277

Query: 268 SHPRDMSDCLIKAHGDLDVL-------MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
           S       C  KA+   + L       +  L +  +SG+ +IL ++ +        +   
Sbjct: 278 S-------CNAKANVPYETLKVLKDNGLRLLLVGYESGNQQILNNIKKGMRVEVAEKFTK 330

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
               +   IAI   FIVG PGET +  + T+    +I      + + S     PG+ + +
Sbjct: 331 NCHEL--GIAIHGTFIVGLPGETKETIQETIAFAKRI---NPHTIQVSLAAPYPGTFLYK 385

Query: 381 QVDEN 385
           Q  EN
Sbjct: 386 QAVEN 390


>gi|15679877|ref|NP_276995.1| hypothetical protein MTH1895 [Methanothermobacter
           thermautotrophicus str. Delta H]
 gi|2623028|gb|AAB86355.1| conserved protein [Methanothermobacter thermautotrophicus str.
           Delta H]
          Length = 501

 Score = 36.6 bits (83), Expect = 10.0,   Method: Compositional matrix adjust.
 Identities = 52/262 (19%), Positives = 112/262 (42%), Gaps = 21/262 (8%)

Query: 175 GVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLID-NGVCEITLLGQNVN 233
           G +  L +  GC + C FC+  Y    +   SL +++D +    +  G  +++L+G   +
Sbjct: 187 GRSFLLGVSRGCSRGCRFCMSGYLYRPKRETSLRKLIDISESGCEATGYSKVSLIGAAAS 246

Query: 234 AWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHL 293
            +    +D E C   + L  +  +  +  LR  +  P ++ + LI+       + P   +
Sbjct: 247 DY--SRID-ELC---NELVDMGLMVSMPSLRIESVTP-ELMEALIRGGLKTITMAPESTM 299

Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
            ++   DR+ K +       + R+ ++        + +   F++G PGE+ +D      L
Sbjct: 300 KLR---DRLNKPITDSMVFEKTRKALEM------GLRVKMYFLIGAPGESREDLEEMARL 350

Query: 354 VDKIGYAQ--AFSFKYSPRLGTPGSNM-LEQVDENVKAERLLCLQKKLREQQVSFNDACV 410
           +  +   +    SF  +P +  P + +  E  D     +R+  L + +R   V       
Sbjct: 351 MRDLSEIRRGRVSFSVNPLIPKPHTPLQWEGYDAREMKQRIRFLGRLVRGLPVRMGSP-R 409

Query: 411 GQIIEVLIEKHGKEKGKLVGRS 432
           G +I+ ++   G E G+L+ R+
Sbjct: 410 GGLIQHVLSTGGPEIGELIERA 431


Searching..................................................done


Results from round 2




>gi|255764472|ref|YP_003064841.2| 2-methylthioadenine synthetase (miaB-like) protein [Candidatus
           Liberibacter asiaticus str. psy62]
 gi|254547823|gb|ACT56901.2| 2-methylthioadenine synthetase (miaB-like) protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 469

 Score =  614 bits (1584), Expect = e-174,   Method: Composition-based stats.
 Identities = 469/469 (100%), Positives = 469/469 (100%)

Query: 1   MGLFIKLIGVAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD 60
           MGLFIKLIGVAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD
Sbjct: 1   MGLFIKLIGVAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD 60

Query: 61  DADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRR 120
           DADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRR
Sbjct: 61  DADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRR 120

Query: 121 SPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFL 180
           SPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFL
Sbjct: 121 SPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFL 180

Query: 181 TIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL 240
           TIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL
Sbjct: 181 TIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL 240

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300
           DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD
Sbjct: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
           RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA
Sbjct: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360

Query: 361 QAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
           QAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK
Sbjct: 361 QAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420

Query: 421 HGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
           HGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELVV
Sbjct: 421 HGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469


>gi|315122124|ref|YP_004062613.1| 2-methylthioadenine synthetase (miaB-like) protein [Candidatus
           Liberibacter solanacearum CLso-ZC1]
 gi|313495526|gb|ADR52125.1| 2-methylthioadenine synthetase (miaB-like) protein [Candidatus
           Liberibacter solanacearum CLso-ZC1]
          Length = 457

 Score =  568 bits (1465), Expect = e-160,   Method: Composition-based stats.
 Identities = 384/457 (84%), Positives = 424/457 (92%)

Query: 13  MVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHI 72
           MV Q V+Q + PQ+FFVKSYGCQMNVYDSLR+ED+FFS+GYER +S+DDADLIVLNTCHI
Sbjct: 1   MVLQAVNQNLSPQKFFVKSYGCQMNVYDSLRIEDIFFSKGYERADSIDDADLIVLNTCHI 60

Query: 73  REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT 132
           REKAAEKVYS LGRIRNLKNSRIKEG + +VVVAGCVAQAEGEEILRRSPIVNVVVGPQT
Sbjct: 61  REKAAEKVYSSLGRIRNLKNSRIKEGRETIVVVAGCVAQAEGEEILRRSPIVNVVVGPQT 120

Query: 133 YYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTF 192
           YYRLPELLERARFGKRVVDTDYS EDKFERLSIVDGGY R+R V AFLTIQEGCDKFCTF
Sbjct: 121 YYRLPELLERARFGKRVVDTDYSAEDKFERLSIVDGGYKRRRSVAAFLTIQEGCDKFCTF 180

Query: 193 CVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLY 252
           CVVPYTRG EISRSLSQ+V+EARKL+ +GV EITLLGQNVNAW GKGL+G+KC FSDLLY
Sbjct: 181 CVVPYTRGAEISRSLSQIVEEARKLVASGVREITLLGQNVNAWCGKGLNGQKCNFSDLLY 240

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
           SL++IK L+RLRYTTSHPRDMSDCLIKAHG+LD+LMPYLHLPVQSGSDRILKSMNRRHT 
Sbjct: 241 SLADIKSLIRLRYTTSHPRDMSDCLIKAHGELDILMPYLHLPVQSGSDRILKSMNRRHTV 300

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
           YEY+QIIDRIRS+RP+IAISSDFIVGFPGE D DF  TM+LV+ IGYAQAFSFKYSPR G
Sbjct: 301 YEYQQIIDRIRSIRPNIAISSDFIVGFPGERDSDFEGTMNLVENIGYAQAFSFKYSPRPG 360

Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS 432
           TPG+NML QV+E+VK ERLLCLQKKLREQQVSFN+ C+GQI+EVLIEK GKE+G+LVGRS
Sbjct: 361 TPGANMLGQVEESVKTERLLCLQKKLREQQVSFNNDCIGQIVEVLIEKEGKERGQLVGRS 420

Query: 433 PWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
           PWLQSVVL+ ++HNIGD++KVRITDVK  TLYGE VV
Sbjct: 421 PWLQSVVLDGRDHNIGDVVKVRITDVKTITLYGEFVV 457


>gi|222084693|ref|YP_002543222.1| 2-methylthioadenine synthetase (miaB-like) protein [Agrobacterium
           radiobacter K84]
 gi|221722141|gb|ACM25297.1| 2-methylthioadenine synthetase (miaB-like) protein [Agrobacterium
           radiobacter K84]
          Length = 470

 Score =  544 bits (1401), Expect = e-152,   Method: Composition-based stats.
 Identities = 285/444 (64%), Positives = 354/444 (79%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F+K+YGCQMNVYDS RM D     GYE    M++ADL++LNTCHIREKAAEKVYS L
Sbjct: 27  RKVFIKTYGCQMNVYDSTRMSDALARDGYEPTEDMEEADLVLLNTCHIREKAAEKVYSAL 86

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR+R++K  +  +G ++++ V GCVAQAEGEEILRR+P V+VV+GPQTY+RLP+ L RA+
Sbjct: 87  GRLRDMKKRKAADGREMMIGVTGCVAQAEGEEILRRAPAVDVVIGPQTYHRLPDALRRAK 146

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G+RVVDT+Y++EDKFE L   +    R RGVTAFLT+QEGCDKFCTFCVVPYTRG E+S
Sbjct: 147 EGQRVVDTEYALEDKFEHLPTPERSKIRARGVTAFLTVQEGCDKFCTFCVVPYTRGSEVS 206

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           RS++Q+V+EA KL+D GV EITLLGQNVNAW G G  GE  +  DLLY LSEI GL RLR
Sbjct: 207 RSVAQIVEEAEKLVDGGVREITLLGQNVNAWHGAGPKGEAWSLGDLLYRLSEIPGLARLR 266

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           YTTSHPRDM D LI AH DL  LMPYLHLPVQSGS+RILK+MNRRHTA EY  +I++IR+
Sbjct: 267 YTTSHPRDMDDRLISAHRDLRTLMPYLHLPVQSGSNRILKAMNRRHTAAEYFALIEKIRA 326

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
            RPDIA+S DFIVGFPGET+ DF  T+ LV+++ YAQAFSFKYS R GTPG+ + +QV E
Sbjct: 327 ARPDIALSGDFIVGFPGETEQDFADTLRLVEEVNYAQAFSFKYSTRPGTPGAELKDQVPE 386

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
            +KAERL  LQ  L +QQ +F DACVG++++VL+EK G+  G+L+GRSPWLQSV +++K 
Sbjct: 387 EIKAERLERLQALLLKQQHAFADACVGKVVDVLLEKPGRMPGQLIGRSPWLQSVNIDAKA 446

Query: 445 HNIGDIIKVRITDVKISTLYGELV 468
             IGDII VRIT    ++L+ EL+
Sbjct: 447 SQIGDIINVRITGTSTNSLFAELL 470


>gi|227820628|ref|YP_002824598.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Sinorhizobium
           fredii NGR234]
 gi|227339627|gb|ACP23845.1| putative tRNA-i(6)A37 modification enzyme MiaB [Sinorhizobium
           fredii NGR234]
          Length = 466

 Score =  539 bits (1389), Expect = e-151,   Method: Composition-based stats.
 Identities = 282/457 (61%), Positives = 352/457 (77%)

Query: 12  HMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCH 71
               +  D+ +  ++ FVK+YGCQMNVYDS RM D     GY   + ++DAD ++LNTCH
Sbjct: 9   PKSPRAGDEHVPARKVFVKTYGCQMNVYDSDRMSDALSRDGYVATDVLEDADFVLLNTCH 68

Query: 72  IREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ 131
           IREKAAEKVYS LGR+R LK ++  EG ++++ VAGCVAQAEG EILRR+P V++V+GPQ
Sbjct: 69  IREKAAEKVYSELGRLRELKKAKASEGREMVIGVAGCVAQAEGNEILRRAPAVDLVIGPQ 128

Query: 132 TYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCT 191
           TY+RLPE L+RAR G+RVV+TDY++EDKFE L   D    R RGVTAFLT+QEGCDKFCT
Sbjct: 129 TYHRLPEALKRARSGERVVETDYAIEDKFEHLPAPDKAKTRSRGVTAFLTVQEGCDKFCT 188

Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLL 251
           FCVVPYTRG E+SR ++Q++ EA KL+D GV EITLLGQNVNAW G G +G      DLL
Sbjct: 189 FCVVPYTRGAEVSRPVAQILAEAEKLVDGGVREITLLGQNVNAWHGAGPNGRDWGLGDLL 248

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
             L EI GL RLRYTTSHPRDM + LI+AH  +  LMPYLHLPVQSGSDRILK+MNRRHT
Sbjct: 249 RRLGEIDGLARLRYTTSHPRDMDESLIEAHRSMAKLMPYLHLPVQSGSDRILKAMNRRHT 308

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
           A EY  +++RIR+V+PD+A+S DFIVGFPGET+ DF  TM LV+ +GYAQAFSFKYS R 
Sbjct: 309 AAEYLALVERIRAVQPDLALSGDFIVGFPGETEADFEETMRLVEVVGYAQAFSFKYSTRP 368

Query: 372 GTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR 431
           GTPG+++ +QV E+VKA+RL  LQ  L  QQ  F  ACVG+ I++L+EK G+  G+LVGR
Sbjct: 369 GTPGADLKDQVPEDVKAKRLERLQSLLVNQQRDFAAACVGREIDLLLEKPGRMPGQLVGR 428

Query: 432 SPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           SPWLQ V +++K   IGDIIKVRIT    ++L+ E++
Sbjct: 429 SPWLQPVNVDAKRSQIGDIIKVRITKAGSNSLFAEMI 465


>gi|254718191|ref|ZP_05180002.1| RNA modification protein [Brucella sp. 83/13]
 gi|265983149|ref|ZP_06095884.1| RNA modification protein [Brucella sp. 83/13]
 gi|306837705|ref|ZP_07470574.1| RNA modification enzyme, MiaB family [Brucella sp. NF 2653]
 gi|264661741|gb|EEZ32002.1| RNA modification protein [Brucella sp. 83/13]
 gi|306407263|gb|EFM63473.1| RNA modification enzyme, MiaB family [Brucella sp. NF 2653]
          Length = 467

 Score =  535 bits (1379), Expect = e-150,   Method: Composition-based stats.
 Identities = 270/458 (58%), Positives = 347/458 (75%)

Query: 9   GVAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLN 68
            +    +Q        ++ FVK+YGCQMNVYDS RM D   ++GY   ++ DDADL++LN
Sbjct: 7   QIEPATAQETSPRANTRKVFVKTYGCQMNVYDSQRMADSLAAEGYVATDTPDDADLVLLN 66

Query: 69  TCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVV 128
           TCHIREKA+EK+YS LGR+R +K++R  +G +L + VAGCVAQAEG+EILRR+P V++V+
Sbjct: 67  TCHIREKASEKLYSALGRLRKMKDARAADGKELTIGVAGCVAQAEGQEILRRAPNVDLVI 126

Query: 129 GPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
           GPQTY+RLP  L R R G++VV+TDY++EDKFE L        RKRGV+AFLT+QEGCDK
Sbjct: 127 GPQTYHRLPNALARVRGGEKVVETDYAIEDKFEHLPAPRCEETRKRGVSAFLTVQEGCDK 186

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS 248
           FCTFCVVPYTRG E+SRS+ Q+V EA +L D+GV E+TLLGQNVNAW G+G DG +    
Sbjct: 187 FCTFCVVPYTRGSEVSRSVKQIVAEAERLADSGVRELTLLGQNVNAWHGEGEDGREWGLG 246

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
           +LL+ L+ I G+ RLRYTTSHPRDM D LI AH DL  LMPYLHLPVQSGSDRILK+MNR
Sbjct: 247 ELLFRLARIPGIARLRYTTSHPRDMDDSLIAAHRDLRQLMPYLHLPVQSGSDRILKAMNR 306

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
           RH A EY ++I+RIR VRPD+A+S DFIVGFPGETD DF  TM LV ++ YAQA+SFKYS
Sbjct: 307 RHKADEYLRLIERIRDVRPDMALSGDFIVGFPGETDQDFEDTMQLVREVNYAQAYSFKYS 366

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL 428
           PR GTPG+++ + V+E VK ERL  LQ  L  QQ +F D+ +G+ ++VL+EK G+E G++
Sbjct: 367 PRPGTPGADLDDHVEEAVKDERLQRLQALLSAQQYAFQDSMIGRKMDVLLEKPGREAGQM 426

Query: 429 VGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGE 466
           VGRSPWL  V+++     +GDII V+I     ++L  +
Sbjct: 427 VGRSPWLLPVIIDDNKDRVGDIIHVKIVSTGTNSLIAQ 464


>gi|307301303|ref|ZP_07581065.1| RNA modification enzyme, MiaB family [Sinorhizobium meliloti
           BL225C]
 gi|307317974|ref|ZP_07597411.1| RNA modification enzyme, MiaB family [Sinorhizobium meliloti AK83]
 gi|306896376|gb|EFN27125.1| RNA modification enzyme, MiaB family [Sinorhizobium meliloti AK83]
 gi|306903759|gb|EFN34346.1| RNA modification enzyme, MiaB family [Sinorhizobium meliloti
           BL225C]
          Length = 472

 Score =  535 bits (1378), Expect = e-150,   Method: Composition-based stats.
 Identities = 278/453 (61%), Positives = 352/453 (77%)

Query: 16  QIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREK 75
           +  D  +  ++ FVK+YGCQMNVYDS RM D     GY   + ++DAD ++LNTCHIREK
Sbjct: 13  EAGDLNVPARKVFVKTYGCQMNVYDSDRMSDALSRDGYVATDVLEDADFVLLNTCHIREK 72

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135
           AAEKVYS LGR+R LK ++  EG ++L+ VAGCVAQAEG+EILRR P V++V+GPQTY+R
Sbjct: 73  AAEKVYSELGRLRELKKAKALEGREMLIGVAGCVAQAEGDEILRRVPAVDLVIGPQTYHR 132

Query: 136 LPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
           LP+ L+RAR G+R+V+T+Y++EDKF  L   D    R RGVTAFLT+QEGCDKFCTFCVV
Sbjct: 133 LPDALKRARAGQRIVETEYAIEDKFVHLPAPDKAKTRARGVTAFLTVQEGCDKFCTFCVV 192

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
           PYTRG E+SR ++Q+V EA KL++ GV EITLLGQNVNAW G+G  G + +  DLL  L 
Sbjct: 193 PYTRGSEVSRPVAQIVAEAEKLVEGGVREITLLGQNVNAWHGEGPHGREWSLGDLLRRLG 252

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
           EI GL RLRYTTSHPRDM D LI+AH  +  LMPYLHLPVQSGSDRILK+MNRRHTA EY
Sbjct: 253 EIDGLARLRYTTSHPRDMDDSLIEAHRSMAKLMPYLHLPVQSGSDRILKAMNRRHTAAEY 312

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
             +++RIR+ +PD+A+S DFIVGFPGETD DF  T+ LV+++ YAQAFSFKYS R GTPG
Sbjct: 313 LALVERIRAAQPDLALSGDFIVGFPGETDQDFEDTLRLVEEVNYAQAFSFKYSTRPGTPG 372

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWL 435
           + + EQV E+VKA+RL  LQ  L +QQ  F +ACVG+ I++L+EK G+  G+LVGRSPWL
Sbjct: 373 AELKEQVPEDVKAKRLEILQALLVKQQRGFAEACVGREIDLLLEKPGRMPGQLVGRSPWL 432

Query: 436 QSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           Q V +++K   IGDII+VRIT    ++L+ E++
Sbjct: 433 QPVNVDAKASQIGDIIRVRITKAGPNSLFAEMI 465


>gi|306843571|ref|ZP_07476172.1| RNA modification enzyme, MiaB family [Brucella sp. BO1]
 gi|306276262|gb|EFM57962.1| RNA modification enzyme, MiaB family [Brucella sp. BO1]
          Length = 467

 Score =  534 bits (1377), Expect = e-150,   Method: Composition-based stats.
 Identities = 270/458 (58%), Positives = 347/458 (75%)

Query: 9   GVAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLN 68
            +    +Q        ++ FVK+YGCQMNVYDS RM D   ++GY   ++ DDADL++LN
Sbjct: 7   QIEPATAQETSPRANTRKVFVKTYGCQMNVYDSQRMADSLAAEGYVATDTPDDADLVLLN 66

Query: 69  TCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVV 128
           TCHIREKA+EK+YS LGR+R +K++R  +G +L + VAGCVAQAEG+EILRR+P V++V+
Sbjct: 67  TCHIREKASEKLYSALGRLRKMKDARAADGKELTIGVAGCVAQAEGQEILRRAPNVDLVI 126

Query: 129 GPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
           GPQTY+RLP  L R R G++VV+TDY++EDKFE L        RKRGV+AFLT+QEGCDK
Sbjct: 127 GPQTYHRLPNALARVRGGEKVVETDYAIEDKFEHLPAPRREETRKRGVSAFLTVQEGCDK 186

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS 248
           FCTFCVVPYTRG E+SRS+ Q+V EA +L D+GV E+TLLGQNVNAW G+G DG +    
Sbjct: 187 FCTFCVVPYTRGSEVSRSVKQIVAEAERLADSGVRELTLLGQNVNAWHGEGEDGREWGLG 246

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
           +LL+ L+ I G+ RLRYTTSHPRDM D LI AH DL  LMPYLHLPVQSGSDRILK+MNR
Sbjct: 247 ELLFRLARIPGIARLRYTTSHPRDMDDSLIAAHRDLRQLMPYLHLPVQSGSDRILKAMNR 306

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
           RH A EY ++I+RIR VRPD+A+S DFIVGFPGETD DF  TM LV ++ YAQA+SFKYS
Sbjct: 307 RHKADEYLRLIERIRDVRPDMALSGDFIVGFPGETDQDFEDTMRLVREVNYAQAYSFKYS 366

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL 428
           PR GTPG+++ + V+E VK ERL  LQ  L  QQ +F D+ +G+ ++VL+EK G+E G++
Sbjct: 367 PRPGTPGADLDDHVEEAVKDERLQRLQALLSAQQYAFQDSMIGRKMDVLLEKPGREAGQM 426

Query: 429 VGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGE 466
           VGRSPWL  V+++     +GDII V+I     ++L  +
Sbjct: 427 VGRSPWLLPVIIDDNKDRVGDIIHVKIVSTGTNSLIAQ 464


>gi|254700783|ref|ZP_05162611.1| RNA modification protein [Brucella suis bv. 5 str. 513]
 gi|261751292|ref|ZP_05995001.1| RNA modification protein [Brucella suis bv. 5 str. 513]
 gi|261741045|gb|EEY28971.1| RNA modification protein [Brucella suis bv. 5 str. 513]
          Length = 467

 Score =  534 bits (1377), Expect = e-150,   Method: Composition-based stats.
 Identities = 270/458 (58%), Positives = 347/458 (75%)

Query: 9   GVAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLN 68
            +    +Q        ++ FVK+YGCQMNVYDS RM D   ++GY   ++ DDADL++LN
Sbjct: 7   QIEPATAQETSPRANTRKVFVKTYGCQMNVYDSQRMADSLAAEGYVATDTPDDADLVLLN 66

Query: 69  TCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVV 128
           TCHIREKA+EK+YS LGR+R +K++R  +G +L + VAGCVAQAEG+EILRR+P V++V+
Sbjct: 67  TCHIREKASEKLYSALGRLRKMKDARAADGKELTIGVAGCVAQAEGQEILRRAPNVDLVI 126

Query: 129 GPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
           GPQTY+RLP  L R R G++VV+TDY++EDKFE L        RKRGV+AFLT+QEGCDK
Sbjct: 127 GPQTYHRLPNALARVRGGEKVVETDYAIEDKFEHLPAPRREETRKRGVSAFLTVQEGCDK 186

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS 248
           FCTFCVVPYTRG E+SRS+ Q+V EA +L D+GV E+TLLGQNVNAW G+G DG +    
Sbjct: 187 FCTFCVVPYTRGSEVSRSVKQIVAEAERLADSGVRELTLLGQNVNAWHGEGEDGREWGLG 246

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
           +LL+ L+ I G+ RLRYTTSHPRDM D LI AH DL  LMPYLHLPVQSGSDRILK+MNR
Sbjct: 247 ELLFRLARIPGIARLRYTTSHPRDMDDSLIAAHRDLRQLMPYLHLPVQSGSDRILKAMNR 306

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
           RH A EY ++I+RIR+VRPD+A+S DFIVGFPGETD DF  TM LV  + YAQA+SFKYS
Sbjct: 307 RHKADEYLRLIERIRNVRPDMALSGDFIVGFPGETDQDFEDTMQLVRDVNYAQAYSFKYS 366

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL 428
           PR GTPG+++ + V+E VK ERL  LQ  L  QQ +F D+ +G+ ++VL+EK G+E G++
Sbjct: 367 PRPGTPGADLDDHVEEAVKDERLQRLQALLSAQQYAFQDSMIGRKMDVLLEKPGREAGQM 426

Query: 429 VGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGE 466
           VGRSPWL  V+++     +GDII V+I     ++L  +
Sbjct: 427 VGRSPWLLPVIIDDNKDRVGDIIHVKIVSTGTNSLIAQ 464


>gi|15964158|ref|NP_384511.1| hypothetical protein SMc01115 [Sinorhizobium meliloti 1021]
 gi|81635228|sp|Q92SI7|MIAB_RHIME RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|15073334|emb|CAC41842.1| Probable tRNA-i(6)A37 modification enzyme, 2-methylthioadenine
           synthetase [Sinorhizobium meliloti 1021]
          Length = 472

 Score =  534 bits (1377), Expect = e-150,   Method: Composition-based stats.
 Identities = 278/450 (61%), Positives = 351/450 (78%)

Query: 19  DQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAE 78
           D  +  ++ FVK+YGCQMNVYDS RM D     GY   + ++DAD ++LNTCHIREKAAE
Sbjct: 16  DLNVPARKVFVKTYGCQMNVYDSDRMSDALSRDGYVATDVLEDADFVLLNTCHIREKAAE 75

Query: 79  KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPE 138
           KVYS LGR+R LK ++  EG ++L+ VAGCVAQAEG+EILRR P V++V+GPQTY+RLP+
Sbjct: 76  KVYSELGRLRELKKAKALEGREMLIGVAGCVAQAEGDEILRRVPAVDLVIGPQTYHRLPD 135

Query: 139 LLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
            L+RAR G+R+V+T+Y++EDKF  L   D    R RGVTAFLT+QEGCDKFCTFCVVPYT
Sbjct: 136 ALKRARAGQRIVETEYAIEDKFVHLPAPDKAKTRARGVTAFLTVQEGCDKFCTFCVVPYT 195

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258
           RG E+SR ++Q+V EA KL++ GV EITLLGQNVNAW G+G  G + +  DLL  L EI 
Sbjct: 196 RGSEVSRPVAQIVAEAEKLVEGGVREITLLGQNVNAWHGEGPHGREWSLGDLLRRLGEID 255

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           GL RLRYTTSHPRDM D LI+AH  +  LMPYLHLPVQSGSDRILK+MNRRHTA EY  +
Sbjct: 256 GLARLRYTTSHPRDMDDSLIEAHRSMAKLMPYLHLPVQSGSDRILKAMNRRHTAAEYLAL 315

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           ++RIR+ +PD+A+S DFIVGFPGETD DF  T+ LV+++ YAQAFSFKYS R GTPG+ +
Sbjct: 316 VERIRAAQPDLALSGDFIVGFPGETDQDFEDTLRLVEEVNYAQAFSFKYSTRPGTPGAEL 375

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSV 438
            EQV E+VKA+RL  LQ  L +QQ  F +ACVG+ I++L+EK G+  G+LVGRSPWLQ V
Sbjct: 376 KEQVPEDVKAKRLEILQALLVKQQRGFAEACVGREIDLLLEKPGRMPGQLVGRSPWLQPV 435

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            +++K   IGDII+VRIT    ++L+ E++
Sbjct: 436 NVDAKASQIGDIIRVRITKAGPNSLFAEMI 465


>gi|23503001|ref|NP_699128.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Brucella suis
           1330]
 gi|161620062|ref|YP_001593949.1| RNA modification protein [Brucella canis ATCC 23365]
 gi|225626520|ref|ZP_03784559.1| RNA modification enzyme, MiaB family protein [Brucella ceti str.
           Cudo]
 gi|254705152|ref|ZP_05166980.1| RNA modification protein [Brucella suis bv. 3 str. 686]
 gi|254707331|ref|ZP_05169159.1| RNA modification protein [Brucella pinnipedialis M163/99/10]
 gi|254709128|ref|ZP_05170939.1| RNA modification protein [Brucella pinnipedialis B2/94]
 gi|254713447|ref|ZP_05175258.1| RNA modification protein [Brucella ceti M644/93/1]
 gi|254716197|ref|ZP_05178008.1| RNA modification protein [Brucella ceti M13/05/1]
 gi|256030653|ref|ZP_05444267.1| RNA modification protein [Brucella pinnipedialis M292/94/1]
 gi|256158655|ref|ZP_05456538.1| RNA modification protein [Brucella ceti M490/95/1]
 gi|256254059|ref|ZP_05459595.1| RNA modification protein [Brucella ceti B1/94]
 gi|260169557|ref|ZP_05756368.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Brucella sp.
           F5/99]
 gi|260567379|ref|ZP_05837849.1| RNA modification protein [Brucella suis bv. 4 str. 40]
 gi|261217971|ref|ZP_05932252.1| RNA modification protein [Brucella ceti M13/05/1]
 gi|261221200|ref|ZP_05935481.1| RNA modification protein [Brucella ceti B1/94]
 gi|261314813|ref|ZP_05954010.1| RNA modification protein [Brucella pinnipedialis M163/99/10]
 gi|261316628|ref|ZP_05955825.1| RNA modification protein [Brucella pinnipedialis B2/94]
 gi|261321179|ref|ZP_05960376.1| RNA modification protein [Brucella ceti M644/93/1]
 gi|261755857|ref|ZP_05999566.1| RNA modification protein [Brucella suis bv. 3 str. 686]
 gi|261759085|ref|ZP_06002794.1| RNA modification protein [Brucella sp. F5/99]
 gi|265987700|ref|ZP_06100257.1| RNA modification protein [Brucella pinnipedialis M292/94/1]
 gi|265997161|ref|ZP_06109718.1| RNA modification protein [Brucella ceti M490/95/1]
 gi|294851378|ref|ZP_06792051.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Brucella sp. NVSL
           07-0026]
 gi|81751814|sp|Q8FXU4|MIAB_BRUSU RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|229890452|sp|A9M9Y3|MIAB_BRUC2 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|23349040|gb|AAN31043.1| conserved hypothetical protein [Brucella suis 1330]
 gi|161336873|gb|ABX63178.1| RNA modification enzyme, MiaB family [Brucella canis ATCC 23365]
 gi|225618177|gb|EEH15220.1| RNA modification enzyme, MiaB family protein [Brucella ceti str.
           Cudo]
 gi|260156897|gb|EEW91977.1| RNA modification protein [Brucella suis bv. 4 str. 40]
 gi|260919784|gb|EEX86437.1| RNA modification protein [Brucella ceti B1/94]
 gi|260923060|gb|EEX89628.1| RNA modification protein [Brucella ceti M13/05/1]
 gi|261293869|gb|EEX97365.1| RNA modification protein [Brucella ceti M644/93/1]
 gi|261295851|gb|EEX99347.1| RNA modification protein [Brucella pinnipedialis B2/94]
 gi|261303839|gb|EEY07336.1| RNA modification protein [Brucella pinnipedialis M163/99/10]
 gi|261739069|gb|EEY27065.1| RNA modification protein [Brucella sp. F5/99]
 gi|261745610|gb|EEY33536.1| RNA modification protein [Brucella suis bv. 3 str. 686]
 gi|262551629|gb|EEZ07619.1| RNA modification protein [Brucella ceti M490/95/1]
 gi|264659897|gb|EEZ30158.1| RNA modification protein [Brucella pinnipedialis M292/94/1]
 gi|294819967|gb|EFG36966.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Brucella sp. NVSL
           07-0026]
          Length = 467

 Score =  534 bits (1377), Expect = e-149,   Method: Composition-based stats.
 Identities = 270/458 (58%), Positives = 348/458 (75%)

Query: 9   GVAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLN 68
            +   ++Q        ++ FVK+YGCQMNVYDS RM D   ++GY   ++ DDADL++LN
Sbjct: 7   QIEPAMAQETSPRANTRKVFVKTYGCQMNVYDSQRMADSLAAEGYVATDTPDDADLVLLN 66

Query: 69  TCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVV 128
           TCHIREKA+EK+YS LGR+R +K++R  +G +L + VAGCVAQAEG+EILRR+P V++V+
Sbjct: 67  TCHIREKASEKLYSALGRLRKMKDARAADGKELTIGVAGCVAQAEGQEILRRAPNVDLVI 126

Query: 129 GPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
           GPQTY+RLP  L R R G++VV+TDY++EDKFE L        RKRGV+AFLT+QEGCDK
Sbjct: 127 GPQTYHRLPNALARVRGGEKVVETDYAIEDKFEHLPAPRREETRKRGVSAFLTVQEGCDK 186

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS 248
           FCTFCVVPYTRG E+SRS+ Q+V EA +L D+GV E+TLLGQNVNAW G+G DG +    
Sbjct: 187 FCTFCVVPYTRGSEVSRSVKQIVAEAERLADSGVRELTLLGQNVNAWHGEGEDGREWGLG 246

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
           +LL+ L+ I G+ RLRYTTSHPRDM D LI AH DL  LMPYLHLPVQSGSDRILK+MNR
Sbjct: 247 ELLFRLARIPGIARLRYTTSHPRDMDDSLIAAHRDLRQLMPYLHLPVQSGSDRILKAMNR 306

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
           RH A EY ++I+RIR+VRPD+A+S DFIVGFPGETD DF  TM LV  + YAQA+SFKYS
Sbjct: 307 RHKADEYLRLIERIRNVRPDMALSGDFIVGFPGETDQDFEDTMQLVRDVNYAQAYSFKYS 366

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL 428
           PR GTPG+++ + V+E VK ERL  LQ  L  QQ +F D+ +G+ ++VL+EK G+E G++
Sbjct: 367 PRPGTPGADLDDHVEEAVKDERLQRLQALLSAQQYAFQDSMIGRKMDVLLEKPGREAGQM 426

Query: 429 VGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGE 466
           VGRSPWL  V+++     +GDII V+I     ++L  +
Sbjct: 427 VGRSPWLLPVIIDDNKDRVGDIIHVKIVSTGTNSLIAQ 464


>gi|150395268|ref|YP_001325735.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Sinorhizobium
           medicae WSM419]
 gi|229890663|sp|A6U5H0|MIAB_SINMW RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|150026783|gb|ABR58900.1| RNA modification enzyme, MiaB family [Sinorhizobium medicae WSM419]
          Length = 472

 Score =  534 bits (1376), Expect = e-149,   Method: Composition-based stats.
 Identities = 280/457 (61%), Positives = 353/457 (77%)

Query: 12  HMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCH 71
               +  D  +  ++ FVK+YGCQMNVYDS RM D     GY   + +++AD ++LNTCH
Sbjct: 9   PTSPEAGDLNVPARKVFVKTYGCQMNVYDSDRMSDALSRDGYVATDVLEEADFVLLNTCH 68

Query: 72  IREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ 131
           IREKAAEKVYS LGR+R+LK ++ +EG ++L+ VAGCVAQAEG+EILRR+P V++V+GPQ
Sbjct: 69  IREKAAEKVYSELGRLRDLKKAKAREGREMLIGVAGCVAQAEGKEILRRAPAVDLVIGPQ 128

Query: 132 TYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCT 191
           TY+RLPE L RAR G+R+V+TDY++EDKF  L   D    R RGVTAFLT+QEGCDKFCT
Sbjct: 129 TYHRLPEALRRARTGERIVETDYAIEDKFVHLPAPDKAKTRARGVTAFLTVQEGCDKFCT 188

Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLL 251
           FCVVPYTRG E+SR ++Q+V EA KL++ GV EITLLGQNVNAW G G  G +    DLL
Sbjct: 189 FCVVPYTRGSEVSRPVAQIVAEAEKLVEGGVREITLLGQNVNAWHGAGPHGREWGLGDLL 248

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
             L EI+GL RLRYTTSHPRDM D LI+AH  +  LMPYLHLPVQSGSDRILK+MNRRHT
Sbjct: 249 RRLGEIEGLARLRYTTSHPRDMDDSLIEAHRSMAKLMPYLHLPVQSGSDRILKAMNRRHT 308

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
           A EY  ++ RIR+V+PD+A+S DFIVGFPGETD+DF  T+ LVD + YAQAFSFKYS R 
Sbjct: 309 AAEYLALVARIRAVQPDLALSGDFIVGFPGETDEDFEDTLRLVDAVNYAQAFSFKYSTRP 368

Query: 372 GTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR 431
           GTPG+ + +QV E+VKA+RL  LQ  L +QQ  F +ACVG+ I++L+EK G+  G+LVGR
Sbjct: 369 GTPGAELEQQVPEDVKAKRLEILQALLIKQQRGFAEACVGREIDLLLEKPGRMPGQLVGR 428

Query: 432 SPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           SPWLQ V +++K   IGDII+VRIT    ++L+ E++
Sbjct: 429 SPWLQPVNVDAKASQIGDIIRVRITKAGPNSLFAEMI 465


>gi|306842738|ref|ZP_07475380.1| RNA modification enzyme, MiaB family [Brucella sp. BO2]
 gi|306287082|gb|EFM58587.1| RNA modification enzyme, MiaB family [Brucella sp. BO2]
          Length = 467

 Score =  534 bits (1375), Expect = e-149,   Method: Composition-based stats.
 Identities = 270/458 (58%), Positives = 346/458 (75%)

Query: 9   GVAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLN 68
            +    +Q        ++ FVK+YGCQMNVYDS RM D   ++GY   ++ DDADL++LN
Sbjct: 7   QIEPATAQETSPRANTRKVFVKTYGCQMNVYDSQRMADSLAAEGYVATDTPDDADLVLLN 66

Query: 69  TCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVV 128
           TCHIREKA+EK+YS LGR+R +K++R  +G +L + VAGCVAQAEG+EILRR+P V++V+
Sbjct: 67  TCHIREKASEKLYSALGRLRKMKDARAADGKELTIGVAGCVAQAEGQEILRRAPNVDLVI 126

Query: 129 GPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
           GPQTY+RLP  L R R G++VV+TDY++EDKFE L        RKRGV+AFLT+QEGCDK
Sbjct: 127 GPQTYHRLPNALARVRGGEKVVETDYAIEDKFEHLPAPRREETRKRGVSAFLTVQEGCDK 186

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS 248
           FCTFCVVPYTRG E+SRS+ Q+V EA +L D+GV E+TLLGQNVNAW G+G DG +    
Sbjct: 187 FCTFCVVPYTRGSEVSRSVKQIVAEAERLADSGVRELTLLGQNVNAWHGEGEDGREWGLG 246

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
           +LL+ L+ I G+ RLRYTTSHPRDM D LI AH DL  LMPYLHLPVQSGSDRILK+MNR
Sbjct: 247 ELLFRLARIPGIARLRYTTSHPRDMDDSLIAAHRDLRQLMPYLHLPVQSGSDRILKAMNR 306

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
           RH A EY ++I+RIR VRPD+A+S DFIVGFPGETD DF  TM LV ++ YAQA+SFKYS
Sbjct: 307 RHKADEYLRLIERIRDVRPDMALSGDFIVGFPGETDQDFEDTMQLVREVNYAQAYSFKYS 366

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL 428
           PR GTPG+++ + V+E VK ERL  LQ  L  QQ  F D+ +G+ ++VL+EK G+E G++
Sbjct: 367 PRPGTPGADLDDHVEEAVKDERLQRLQALLSAQQYDFQDSMIGRKMDVLLEKPGREAGQM 426

Query: 429 VGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGE 466
           VGRSPWL  V+++     +GDII V+I     ++L  +
Sbjct: 427 VGRSPWLLPVIIDDNKDRVGDIIHVKIVSTGTNSLIAQ 464


>gi|148559930|ref|YP_001259948.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Brucella ovis
           ATCC 25840]
 gi|229890453|sp|A5VTA1|MIAB_BRUO2 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|148371187|gb|ABQ61166.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Brucella ovis ATCC 25840]
          Length = 467

 Score =  533 bits (1374), Expect = e-149,   Method: Composition-based stats.
 Identities = 269/458 (58%), Positives = 347/458 (75%)

Query: 9   GVAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLN 68
            +   ++Q        ++ FVK+YGCQMNVYDS RM D   ++GY   ++ DDADL++LN
Sbjct: 7   QIEPAMAQETSPRANTRKVFVKTYGCQMNVYDSQRMADSLAAEGYVATDTPDDADLVLLN 66

Query: 69  TCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVV 128
           TCHIREKA+EK+YS LGR+R +K++R  +G +L + VAGCVAQAEG+EILRR+P V++V+
Sbjct: 67  TCHIREKASEKLYSALGRLRKMKDARAADGKELTIGVAGCVAQAEGQEILRRAPNVDLVI 126

Query: 129 GPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
           GPQTY+RLP  L R R G++VV+TDY++EDKFE L        RKRGV+AFL +QEGCDK
Sbjct: 127 GPQTYHRLPNALARVRGGEKVVETDYAIEDKFEHLPAPRREETRKRGVSAFLAVQEGCDK 186

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS 248
           FCTFCVVPYTRG E+SRS+ Q+V EA +L D+GV E+TLLGQNVNAW G+G DG +    
Sbjct: 187 FCTFCVVPYTRGSEVSRSVKQIVAEAERLADSGVRELTLLGQNVNAWHGEGEDGREWGLG 246

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
           +LL+ L+ I G+ RLRYTTSHPRDM D LI AH DL  LMPYLHLPVQSGSDRILK+MNR
Sbjct: 247 ELLFRLARIPGIARLRYTTSHPRDMDDSLIAAHRDLRQLMPYLHLPVQSGSDRILKAMNR 306

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
           RH A EY ++I+RIR+VRPD+A+S DFIVGFPGETD DF  TM LV  + YAQA+SFKYS
Sbjct: 307 RHKADEYLRLIERIRNVRPDMALSGDFIVGFPGETDQDFEDTMQLVRDVNYAQAYSFKYS 366

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL 428
           PR GTPG+++ + V+E VK ERL  LQ  L  QQ +F D+ +G+ ++VL+EK G+E G++
Sbjct: 367 PRPGTPGADLDDHVEEAVKDERLQRLQALLSAQQYAFQDSMIGRKMDVLLEKPGREAGQM 426

Query: 429 VGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGE 466
           VGRSPWL  V+++     +GDII V+I     ++L  +
Sbjct: 427 VGRSPWLLPVIIDDNKDRVGDIIHVKIVSTGTNSLIAQ 464


>gi|325291790|ref|YP_004277654.1| miaB protein [Agrobacterium sp. H13-3]
 gi|325059643|gb|ADY63334.1| miaB protein [Agrobacterium sp. H13-3]
          Length = 467

 Score =  533 bits (1373), Expect = e-149,   Method: Composition-based stats.
 Identities = 283/455 (62%), Positives = 356/455 (78%)

Query: 13  MVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHI 72
               I  +    ++ F+K+YGCQMNVYDS+RM D     GY +   M +ADL++LNTCHI
Sbjct: 10  APEMIAREGSNSRKVFIKTYGCQMNVYDSVRMSDALAKDGYVQTEDMGEADLVLLNTCHI 69

Query: 73  REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT 132
           REKAAEKVYS LGR+R++K SR ++G + ++ VAGCVAQAEGEEILRR+P V+VV+GPQT
Sbjct: 70  REKAAEKVYSALGRLRDMKKSREEQGREFVIGVAGCVAQAEGEEILRRAPAVDVVIGPQT 129

Query: 133 YYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTF 192
           Y+RLP+ L+R R G+RV++T+Y+VEDKFE L + +    R RGVTAFLT+QEGCDKFCTF
Sbjct: 130 YHRLPDALKRVRGGERVIETEYAVEDKFEHLPVAEKATLRTRGVTAFLTVQEGCDKFCTF 189

Query: 193 CVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLY 252
           CVVPYTRG E+SR + Q+VDEA KL+D GV EITLLGQNVNAW+G+G  GEK   ++LLY
Sbjct: 190 CVVPYTRGSEVSRPVRQIVDEAMKLVDAGVREITLLGQNVNAWQGEGSKGEKWGLAELLY 249

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
            L+EI GL RLRYTTSHPRDM D LI AH DL +LMPYLHLPVQSGSDRILK+MNRRHT 
Sbjct: 250 RLAEIPGLARLRYTTSHPRDMDDRLIGAHRDLRILMPYLHLPVQSGSDRILKAMNRRHTG 309

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
            EY Q+I++IR+ RPDIA+S DFIVGFPGETD DF  TM +++++ YAQAFSFKYS R G
Sbjct: 310 EEYIQLIEKIRAARPDIAMSGDFIVGFPGETDRDFEDTMAIIEQVKYAQAFSFKYSTRPG 369

Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS 432
           TPG+++ +QV E VKAERL  LQ  L  QQ  F ++ VG+ ++VL+EK G+   +L+GRS
Sbjct: 370 TPGADLTDQVAEEVKAERLERLQALLLRQQKEFAESLVGKTMDVLLEKPGRMPEQLIGRS 429

Query: 433 PWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
           PWLQSV L++K   IGDI+ VRIT    ++L+ E+
Sbjct: 430 PWLQSVNLDAKTLKIGDIVNVRITATGPNSLFAEV 464


>gi|163757739|ref|ZP_02164828.1| RNA modification enzyme, MiaB family protein [Hoeflea phototrophica
           DFL-43]
 gi|162285241|gb|EDQ35523.1| RNA modification enzyme, MiaB family protein [Hoeflea phototrophica
           DFL-43]
          Length = 480

 Score =  533 bits (1373), Expect = e-149,   Method: Composition-based stats.
 Identities = 274/453 (60%), Positives = 342/453 (75%)

Query: 16  QIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREK 75
           Q  D     ++ FVK+YGCQMNVYDS RM D     GY+ V+S++ ADL+++NTCHIREK
Sbjct: 14  QPADAGTATKKVFVKTYGCQMNVYDSERMGDALSRDGYQPVDSVEAADLVLINTCHIREK 73

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135
           AAEKVYS LGR+  LK  R  EGGDL+V VAGCVAQAEGEE++RR+P+V+VV+GPQTY+R
Sbjct: 74  AAEKVYSQLGRLAQLKKRRNSEGGDLMVAVAGCVAQAEGEEMIRRAPVVDVVIGPQTYHR 133

Query: 136 LPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
           LP  L +AR G+RVV+T++  EDKF+RL     G  R RGVTAFLT+QEGCDKFCTFCVV
Sbjct: 134 LPGALAKARNGERVVETEFPTEDKFDRLPDASAGTIRTRGVTAFLTVQEGCDKFCTFCVV 193

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
           PYTRG E+SR + +++ EA +L   GV E+TLLGQNVNAW G+G DG +    +L++ L+
Sbjct: 194 PYTRGAEVSRPVERIMSEAERLAAAGVREVTLLGQNVNAWHGQGSDGREWGLGELVHRLA 253

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
            I+G+ R+RYTTSHPRDM D LI AH DL  LMPYLHLPVQSGSDRILK+MNRRHTA EY
Sbjct: 254 AIEGIDRIRYTTSHPRDMDDALINAHRDLPELMPYLHLPVQSGSDRILKAMNRRHTAAEY 313

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
            ++++RIR  RPDIA+S DFIVGFPGETD+DF  TM L+ ++ YA AFSFKYS R GTPG
Sbjct: 314 IRLVERIRMARPDIALSGDFIVGFPGETDEDFEDTMRLIREVNYAAAFSFKYSIRPGTPG 373

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWL 435
           + M  QVDE VK+ERL  LQ  + EQ   F   CVG+  ++L+EK G+   +LVGRSPWL
Sbjct: 374 AGMDGQVDEAVKSERLTRLQALINEQTRDFGRQCVGKTADLLLEKPGRNTDQLVGRSPWL 433

Query: 436 QSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           Q V++++K   IGDI+ +RI     + LY E V
Sbjct: 434 QPVIVDAKAGKIGDIVNMRIMQTGSNGLYAEPV 466


>gi|222147351|ref|YP_002548308.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Agrobacterium
           vitis S4]
 gi|221734341|gb|ACM35304.1| miaB protein [Agrobacterium vitis S4]
          Length = 477

 Score =  533 bits (1373), Expect = e-149,   Method: Composition-based stats.
 Identities = 287/460 (62%), Positives = 359/460 (78%), Gaps = 2/460 (0%)

Query: 10  VAHMVSQI-VDQCIVP-QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVL 67
           V+ MV      Q   P ++ F+K+YGCQMNVYDS RM D   ++GY+    M++A L++L
Sbjct: 15  VSAMVEHASAQQKPAPQKKVFIKTYGCQMNVYDSSRMADALVAEGYQSTEDMEEASLVLL 74

Query: 68  NTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVV 127
           NTCHIREKAA+KVYS LGR+R +K  R   G + ++ VAGCVAQAEGEEI+RR P V+VV
Sbjct: 75  NTCHIREKAADKVYSALGRLREMKKIRAARGEEFMIGVAGCVAQAEGEEIVRREPGVDVV 134

Query: 128 VGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCD 187
           VGPQTY+RLP+ L RAR G+RVVDTDY+VEDKFE L        ++R +TAFLT+QEGCD
Sbjct: 135 VGPQTYHRLPQALRRARGGERVVDTDYAVEDKFEHLPDPTKIAGKRRMITAFLTVQEGCD 194

Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTF 247
           KFCTFCVVPYTRG E+SR L+Q++ EA++L+++GV EITLLGQNVNAW GKG DG +   
Sbjct: 195 KFCTFCVVPYTRGSEVSRPLAQLLGEAQRLVESGVREITLLGQNVNAWHGKGPDGREMGL 254

Query: 248 SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307
            DLLY L+EI GL RLRYTTSHPRDM + LI+AH DL +LMPYLHLPVQSGSDRILK+MN
Sbjct: 255 GDLLYKLAEIPGLARLRYTTSHPRDMDERLIEAHRDLRMLMPYLHLPVQSGSDRILKAMN 314

Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           RRH A +Y  ++DRIR  RPDIAIS DFIVGFPGETD DF  TM LV++IGYAQAFSFKY
Sbjct: 315 RRHKAADYIALVDRIREARPDIAISGDFIVGFPGETDADFEDTMKLVERIGYAQAFSFKY 374

Query: 368 SPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK 427
           SPR GTPG++M + V E+VK ERL  LQ+ L +QQ  F  + VGQ +++L+EK G+  G+
Sbjct: 375 SPRPGTPGADMPDHVAEDVKTERLARLQELLLKQQHDFARSLVGQTMDLLLEKPGRMPGQ 434

Query: 428 LVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
           ++GRSPWLQSV +++K   IGDII+VRITD+  ++L+ E+
Sbjct: 435 IIGRSPWLQSVNVDAKPSQIGDIIQVRITDIGPNSLFAEV 474


>gi|62290991|ref|YP_222784.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Brucella
           abortus bv. 1 str. 9-941]
 gi|82700900|ref|YP_415474.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Brucella
           melitensis biovar Abortus 2308]
 gi|189025203|ref|YP_001935971.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Brucella
           abortus S19]
 gi|237816493|ref|ZP_04595486.1| RNA modification enzyme, MiaB family [Brucella abortus str. 2308 A]
 gi|254690285|ref|ZP_05153539.1| hypothetical protein Babob68_08952 [Brucella abortus bv. 6 str.
           870]
 gi|254694773|ref|ZP_05156601.1| hypothetical protein Babob3T_08948 [Brucella abortus bv. 3 str.
           Tulya]
 gi|254731314|ref|ZP_05189892.1| hypothetical protein Babob42_08980 [Brucella abortus bv. 4 str.
           292]
 gi|256258538|ref|ZP_05464074.1| hypothetical protein Babob9C_14557 [Brucella abortus bv. 9 str.
           C68]
 gi|260546254|ref|ZP_05821994.1| RNA modification protein [Brucella abortus NCTC 8038]
 gi|260755825|ref|ZP_05868173.1| RNA modification protein [Brucella abortus bv. 6 str. 870]
 gi|260759048|ref|ZP_05871396.1| RNA modification protein [Brucella abortus bv. 4 str. 292]
 gi|260884850|ref|ZP_05896464.1| RNA modification protein [Brucella abortus bv. 9 str. C68]
 gi|261215100|ref|ZP_05929381.1| RNA modification protein [Brucella abortus bv. 3 str. Tulya]
 gi|297247377|ref|ZP_06931095.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Brucella abortus bv. 5
           str. B3196]
 gi|75496027|sp|Q57AB1|MIAB_BRUAB RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|123740938|sp|Q2YQS8|MIAB_BRUA2 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|229890451|sp|B2S9E5|MIAB_BRUA1 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|62197123|gb|AAX75423.1| conserved hypothetical protein [Brucella abortus bv. 1 str. 9-941]
 gi|82617001|emb|CAJ12110.1| Deoxyribonuclease/rho motif-related TRAM:Protein of unknown
           function UPF0004:tRNA-i(6)A37 modification enzyme
           MiaB:Elongator [Brucella melitensis biovar Abortus 2308]
 gi|189020775|gb|ACD73497.1| hypothetical protein BAbS19_I20150 [Brucella abortus S19]
 gi|237788560|gb|EEP62775.1| RNA modification enzyme, MiaB family [Brucella abortus str. 2308 A]
 gi|260096361|gb|EEW80237.1| RNA modification protein [Brucella abortus NCTC 8038]
 gi|260669366|gb|EEX56306.1| RNA modification protein [Brucella abortus bv. 4 str. 292]
 gi|260675933|gb|EEX62754.1| RNA modification protein [Brucella abortus bv. 6 str. 870]
 gi|260874378|gb|EEX81447.1| RNA modification protein [Brucella abortus bv. 9 str. C68]
 gi|260916707|gb|EEX83568.1| RNA modification protein [Brucella abortus bv. 3 str. Tulya]
 gi|297174546|gb|EFH33893.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Brucella abortus bv. 5
           str. B3196]
          Length = 467

 Score =  532 bits (1371), Expect = e-149,   Method: Composition-based stats.
 Identities = 269/458 (58%), Positives = 348/458 (75%)

Query: 9   GVAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLN 68
            +   ++Q        ++ FVK+YGCQMNVYDS RM D   ++GY   ++ DDADL++LN
Sbjct: 7   QIEPAMAQETSPRANTRKVFVKTYGCQMNVYDSQRMADSLAAEGYVATDTPDDADLVLLN 66

Query: 69  TCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVV 128
           TCHIREKA+EK+YS LGR+R ++++R  +G +L + VAGCVAQAEG+EILRR+P V++V+
Sbjct: 67  TCHIREKASEKLYSALGRLRKMRDARAADGKELTIGVAGCVAQAEGQEILRRAPNVDLVI 126

Query: 129 GPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
           GPQTY+RLP  L R R G++VV+TDY++EDKFE L        RKRGV+AFLT+QEGCDK
Sbjct: 127 GPQTYHRLPNALARVRGGEKVVETDYAIEDKFEHLPAPRREETRKRGVSAFLTVQEGCDK 186

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS 248
           FCTFCVVPYTRG E+SRS+ Q+V EA +L D+GV E+TLLGQNVNAW G+G DG +    
Sbjct: 187 FCTFCVVPYTRGSEVSRSVKQIVAEAERLADSGVRELTLLGQNVNAWHGEGEDGREWGLG 246

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
           +LL+ L+ I G+ RLRYTTSHPRDM D LI AH DL  LMPYLHLPVQSGSDRILK+MNR
Sbjct: 247 ELLFRLARIPGIARLRYTTSHPRDMDDSLIAAHRDLRQLMPYLHLPVQSGSDRILKAMNR 306

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
           RH A EY ++I+RIR+VRPD+A+S DFIVGFPGETD DF  TM LV  + YAQA+SFKYS
Sbjct: 307 RHKADEYLRLIERIRNVRPDMALSGDFIVGFPGETDQDFEDTMQLVRDVNYAQAYSFKYS 366

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL 428
           PR GTPG+++ + V+E VK ERL  LQ  L  QQ +F D+ +G+ ++VL+EK G+E G++
Sbjct: 367 PRPGTPGADLDDHVEEAVKDERLQRLQALLSAQQYAFQDSMIGRKMDVLLEKPGREAGQM 426

Query: 429 VGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGE 466
           VGRSPWL  V+++     +GDII V+I     ++L  +
Sbjct: 427 VGRSPWLLPVIIDDNKDRVGDIIHVKIVSTGTNSLIAQ 464


>gi|17988259|ref|NP_540893.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Brucella
           melitensis bv. 1 str. 16M]
 gi|225853579|ref|YP_002733812.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Brucella
           melitensis ATCC 23457]
 gi|256045757|ref|ZP_05448635.1| RNA modification enzyme, MiaB family protein [Brucella melitensis
           bv. 1 str. Rev.1]
 gi|256112476|ref|ZP_05453397.1| RNA modification enzyme, MiaB family protein [Brucella melitensis
           bv. 3 str. Ether]
 gi|256262937|ref|ZP_05465469.1| RNA modification protein [Brucella melitensis bv. 2 str. 63/9]
 gi|260563053|ref|ZP_05833539.1| RNA modification protein [Brucella melitensis bv. 1 str. 16M]
 gi|265992174|ref|ZP_06104731.1| RNA modification protein [Brucella melitensis bv. 1 str. Rev.1]
 gi|265993912|ref|ZP_06106469.1| RNA modification protein [Brucella melitensis bv. 3 str. Ether]
 gi|81851031|sp|Q8YEA2|MIAB_BRUME RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|17984028|gb|AAL53157.1| miab protein [Brucella melitensis bv. 1 str. 16M]
 gi|225641944|gb|ACO01858.1| RNA modification enzyme, MiaB family protein [Brucella melitensis
           ATCC 23457]
 gi|260153069|gb|EEW88161.1| RNA modification protein [Brucella melitensis bv. 1 str. 16M]
 gi|262764893|gb|EEZ10814.1| RNA modification protein [Brucella melitensis bv. 3 str. Ether]
 gi|263003240|gb|EEZ15533.1| RNA modification protein [Brucella melitensis bv. 1 str. Rev.1]
 gi|263092811|gb|EEZ16986.1| RNA modification protein [Brucella melitensis bv. 2 str. 63/9]
 gi|326410151|gb|ADZ67216.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Brucella
           melitensis M28]
 gi|326539870|gb|ADZ88085.1| RNA modification enzyme, MiaB family protein [Brucella melitensis
           M5-90]
          Length = 467

 Score =  532 bits (1370), Expect = e-149,   Method: Composition-based stats.
 Identities = 269/458 (58%), Positives = 347/458 (75%)

Query: 9   GVAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLN 68
            +   ++Q        ++ FVK+YGCQMNVYDS RM D   ++GY   ++ DDADL++LN
Sbjct: 7   QIEPAMAQETSPRANTRKVFVKTYGCQMNVYDSQRMADSLAAEGYVATDTPDDADLVLLN 66

Query: 69  TCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVV 128
           TCHIREKA+EK+YS LGR+R +K++R  +G +L + VAGCVAQAEG+EILRR+P V++V+
Sbjct: 67  TCHIREKASEKLYSALGRLRKMKDARAADGKELTIGVAGCVAQAEGQEILRRAPNVDLVI 126

Query: 129 GPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
           GPQTY+RLP  L R R G++VV+TDY++EDKFE L        RKRGV+AFLT+QEGCDK
Sbjct: 127 GPQTYHRLPNALARVRGGEKVVETDYAIEDKFEHLPAPRREETRKRGVSAFLTVQEGCDK 186

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS 248
           FCTFCVVPYTRG E+SRS+ Q+V EA +L D+GV E+TLLGQNVNAW G+G DG +    
Sbjct: 187 FCTFCVVPYTRGSEVSRSVKQIVAEAERLADSGVRELTLLGQNVNAWHGEGEDGREWGLG 246

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
           +LL+ L+ I G+  LRYTTSHPRDM D LI AH DL  LMPYLHLPVQSGSDRILK+MNR
Sbjct: 247 ELLFRLARIPGIAHLRYTTSHPRDMDDSLIAAHRDLRQLMPYLHLPVQSGSDRILKAMNR 306

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
           RH A EY ++I+RIR+VRPD+A+S DFIVGFPGETD DF  TM LV  + YAQA+SFKYS
Sbjct: 307 RHKADEYLRLIERIRNVRPDMALSGDFIVGFPGETDQDFEDTMQLVRDVNYAQAYSFKYS 366

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL 428
           PR GTPG+++ + V+E VK ERL  LQ  L  QQ +F D+ +G+ ++VL+EK G+E G++
Sbjct: 367 PRPGTPGADLDDHVEEAVKDERLQRLQALLSAQQYAFQDSMIGRKMDVLLEKPGREAGQM 426

Query: 429 VGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGE 466
           VGRSPWL  V+++     +GDII V+I     ++L  +
Sbjct: 427 VGRSPWLLPVIIDDNKDRVGDIIHVKIVSTGTNSLIAQ 464


>gi|239833202|ref|ZP_04681531.1| RNA modification enzyme, MiaB family [Ochrobactrum intermedium LMG
           3301]
 gi|239825469|gb|EEQ97037.1| RNA modification enzyme, MiaB family [Ochrobactrum intermedium LMG
           3301]
          Length = 462

 Score =  531 bits (1369), Expect = e-149,   Method: Composition-based stats.
 Identities = 270/442 (61%), Positives = 343/442 (77%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ FVK+YGCQMNVYDS RM D   ++GY   ++ DDADL++LNTCHIREKA+EK+YS L
Sbjct: 18  RKVFVKTYGCQMNVYDSQRMADSLAAEGYVATDTPDDADLVLLNTCHIREKASEKLYSAL 77

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR+R +K++R   G +L + VAGCVAQAEG+EILRR+P V++V+GPQTY+RLP  L R R
Sbjct: 78  GRLRKMKDAREANGKELTIGVAGCVAQAEGQEILRRAPNVDLVIGPQTYHRLPNALARVR 137

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G++VV+T+Y++EDKFE L        RKRGV+AFLT+QEGCDKFCTFCVVPYTRG E+S
Sbjct: 138 SGEKVVETEYALEDKFEHLPSPRREETRKRGVSAFLTVQEGCDKFCTFCVVPYTRGSEVS 197

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           RS+ Q+V EA +L D+GV E+TLLGQNVNAW G G DG +    +LL+ L+ I G+ RLR
Sbjct: 198 RSVKQIVAEAERLADSGVRELTLLGQNVNAWHGAGDDGREWGLGELLFRLARIPGIARLR 257

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           YTTSHPRDM D LI AH DL  LMPYLHLPVQSGSDRILK+MNRRH A EY ++I+RIR 
Sbjct: 258 YTTSHPRDMDDSLIAAHRDLRQLMPYLHLPVQSGSDRILKAMNRRHKADEYVRLIERIRE 317

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           VRPD+A+S DFIVGFPGETD DF  TM LV ++ YAQA+SFKYSPR GTPG+++ + V+E
Sbjct: 318 VRPDMALSGDFIVGFPGETDQDFEDTMQLVREVNYAQAYSFKYSPRPGTPGADLDDHVEE 377

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
            VK ERL  LQ  L EQQ +F D+ +G+ ++VL+EK G+  G++VGRSPWL  V+++   
Sbjct: 378 AVKDERLQRLQALLSEQQYAFQDSMIGREMDVLLEKPGRVAGQMVGRSPWLLPVIIDDNQ 437

Query: 445 HNIGDIIKVRITDVKISTLYGE 466
             IGDII V+IT    ++L  +
Sbjct: 438 DRIGDIIHVKITSTGTNSLIAQ 459


>gi|256060114|ref|ZP_05450296.1| RNA modification protein [Brucella neotomae 5K33]
 gi|261324091|ref|ZP_05963288.1| RNA modification protein [Brucella neotomae 5K33]
 gi|261300071|gb|EEY03568.1| RNA modification protein [Brucella neotomae 5K33]
          Length = 467

 Score =  531 bits (1368), Expect = e-149,   Method: Composition-based stats.
 Identities = 269/458 (58%), Positives = 347/458 (75%)

Query: 9   GVAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLN 68
            +   ++Q        ++ FVK+YGCQMNVYDS RM D   ++GY   ++ DDADL++LN
Sbjct: 7   QIEPAMAQETSPRANTRKVFVKTYGCQMNVYDSQRMADSLAAEGYVATDTPDDADLVLLN 66

Query: 69  TCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVV 128
           TCHIREKA+EK+YS LGR+R +K++R  +G +L + VAGCVAQAEG+EILRR+P V++V+
Sbjct: 67  TCHIREKASEKLYSALGRLRKMKDARAADGKELTIGVAGCVAQAEGQEILRRAPNVDLVI 126

Query: 129 GPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
           GPQTY+RLP  L R R G++VV+TDY++EDKFE L        RKRGV+AFLT+QEGCDK
Sbjct: 127 GPQTYHRLPNALARVRGGEKVVETDYAIEDKFEHLPAPRREETRKRGVSAFLTVQEGCDK 186

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS 248
           FCTFCVVPYTRG E+SRS+ Q+V EA +L D+GV E+TLLGQNVNAW G+  DG +    
Sbjct: 187 FCTFCVVPYTRGSEVSRSVKQIVAEAERLADSGVRELTLLGQNVNAWHGEVEDGREWGLG 246

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
           +LL+ L+ I G+ RLRYTTSHPRDM D LI AH DL  LMPYLHLPVQSGSDRILK+MNR
Sbjct: 247 ELLFRLARIPGIARLRYTTSHPRDMDDSLIAAHRDLRQLMPYLHLPVQSGSDRILKAMNR 306

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
           RH A EY ++I+RIR+VRPD+A+S DFIVGFPGETD DF  TM LV  + YAQA+SFKYS
Sbjct: 307 RHKADEYLRLIERIRNVRPDMALSGDFIVGFPGETDQDFEDTMQLVRDVNYAQAYSFKYS 366

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL 428
           PR GTPG+++ + V+E VK ERL  LQ  L  QQ +F D+ +G+ ++VL+EK G+E G++
Sbjct: 367 PRPGTPGADLDDHVEEAVKDERLQRLQALLSAQQYAFQDSMIGRKMDVLLEKPGREAGQM 426

Query: 429 VGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGE 466
           VGRSPWL  V+++     +GDII V+I     ++L  +
Sbjct: 427 VGRSPWLLPVIIDDNKDRVGDIIHVKIVSTGTNSLIAQ 464


>gi|110636243|ref|YP_676451.1| RNA modification protein [Mesorhizobium sp. BNC1]
 gi|122965426|sp|Q11BD9|MIAB_MESSB RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|110287227|gb|ABG65286.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Chelativorans sp. BNC1]
          Length = 475

 Score =  531 bits (1367), Expect = e-148,   Method: Composition-based stats.
 Identities = 276/467 (59%), Positives = 349/467 (74%)

Query: 1   MGLFIKLIGVAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD 60
           M   +         S+        ++ FVK+YGCQMNVYDS RM D   ++GY   + ++
Sbjct: 1   MEQNLTTERSETSSSRAGTASRTDKKVFVKTYGCQMNVYDSQRMADALAAEGYRATDVIE 60

Query: 61  DADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRR 120
           DADL++LNTCHIREKAAEKVYS LGRIR LK  R K+G + +V VAGCVAQAEG EILRR
Sbjct: 61  DADLVLLNTCHIREKAAEKVYSELGRIRVLKEERAKQGRETVVGVAGCVAQAEGREILRR 120

Query: 121 SPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFL 180
           +P V++V+GPQTY+RLP ++ RAR G+++V+T+Y+VEDKF+ L   +    R RGVTAFL
Sbjct: 121 APAVDLVIGPQTYHRLPSVVTRARAGEKIVETEYAVEDKFDHLPAPERTAVRSRGVTAFL 180

Query: 181 TIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL 240
           T+QEGCDKFCTFCVVPYTRG E+SR ++Q+V EA +L + GV E+TLLGQNVNAW G+G 
Sbjct: 181 TVQEGCDKFCTFCVVPYTRGAEVSRPVAQIVAEAERLAEAGVRELTLLGQNVNAWHGEGP 240

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300
           DG +     LL+ L+EI GL RLRYTTSHPRDM + LI AH DL  LMPYLHLPVQ+GSD
Sbjct: 241 DGREWGLGRLLFRLAEIPGLDRLRYTTSHPRDMDEELIAAHRDLIKLMPYLHLPVQAGSD 300

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
           RILK+MNR+HTA +Y ++I+RIR+ RPDIA+S DFIVGFPGETD DF  TM +V  + YA
Sbjct: 301 RILKAMNRKHTAADYLRLIERIRAARPDIAMSGDFIVGFPGETDRDFEDTMRIVRDVNYA 360

Query: 361 QAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
           QAFSFKYSPR GTPG++M +QV + VK ERL  LQ  L EQQ +F ++ VG  I++L+EK
Sbjct: 361 QAFSFKYSPRPGTPGADMHDQVPDAVKDERLQRLQALLAEQQRAFGESLVGTEIDLLLEK 420

Query: 421 HGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
            G++ G+LVGRSPWLQ V++      IGDI++VRIT     +L+ E 
Sbjct: 421 PGRQAGQLVGRSPWLQPVIVEENAGQIGDIVRVRITSSGGHSLFCEP 467


>gi|163844167|ref|YP_001628572.1| RNA modification protein [Brucella suis ATCC 23445]
 gi|229890454|sp|B0CK00|MIAB_BRUSI RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|163674890|gb|ABY39001.1| RNA modification enzyme, MiaB family [Brucella suis ATCC 23445]
          Length = 467

 Score =  531 bits (1367), Expect = e-148,   Method: Composition-based stats.
 Identities = 271/458 (59%), Positives = 349/458 (76%)

Query: 9   GVAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLN 68
            +   ++Q        ++ FVK+YGCQMNVYDS RM D   ++GY   ++ DDADL++LN
Sbjct: 7   QIEPAMAQETSPRANTRKVFVKTYGCQMNVYDSQRMADSLAAEGYVATDTPDDADLVLLN 66

Query: 69  TCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVV 128
           TCHIREKA+EK+YS LGR+R +K++R  +G +L + VAGCVAQAEG+EILRR+P V++V+
Sbjct: 67  TCHIREKASEKLYSALGRLRKMKDARAADGKELTIGVAGCVAQAEGQEILRRAPNVDLVI 126

Query: 129 GPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
           GPQTY+RLP  L R R G++VV+TDY++EDKFE L        RKRGV+AFLT+QEGCDK
Sbjct: 127 GPQTYHRLPNALARVRGGEKVVETDYAIEDKFEHLPAPRREETRKRGVSAFLTVQEGCDK 186

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS 248
           FCTFCVVPYTRG E+SRS+ Q+V EA +L D+GV E+TLLGQNVNAW G+G DG +    
Sbjct: 187 FCTFCVVPYTRGSEVSRSVKQIVAEAERLADSGVRELTLLGQNVNAWHGEGEDGREWGLG 246

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
           +LL+ L+ I G+ RLRYTTSHPRDM D LI AH DL  LMPYLHLPVQSGSDRILK+MNR
Sbjct: 247 ELLFRLARIPGIARLRYTTSHPRDMDDSLIAAHRDLRQLMPYLHLPVQSGSDRILKAMNR 306

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
           RH A EY ++I+RIR+VRPD+A+S DFIVGFPGETD DF  TM LV  + YAQA+SFKYS
Sbjct: 307 RHKADEYLRLIERIRNVRPDMALSGDFIVGFPGETDQDFEDTMQLVRDVNYAQAYSFKYS 366

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL 428
           PRLGTPG+++ + V+E VK ERL  LQ  L  QQ +F D+ +G+ ++VL+EK G+E G++
Sbjct: 367 PRLGTPGADLDDHVEEAVKDERLQRLQALLSAQQYAFQDSMIGRKMDVLLEKPGREAGQM 426

Query: 429 VGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGE 466
           VGRSPWL  V+++     +GDII V+I     ++L  +
Sbjct: 427 VGRSPWLLPVIIDDNKDRVGDIIHVKIVSTGTNSLIAQ 464


>gi|159184272|ref|NP_353388.2| miaB protein [Agrobacterium tumefaciens str. C58]
 gi|229890693|sp|Q7D1M2|MIAB_AGRT5 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|159139599|gb|AAK86173.2| miaB protein [Agrobacterium tumefaciens str. C58]
          Length = 455

 Score =  530 bits (1365), Expect = e-148,   Method: Composition-based stats.
 Identities = 284/443 (64%), Positives = 354/443 (79%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F+K+YGCQMNVYDS+RM D     GY +   M +ADL++LNTCHIREKAAEKVYS L
Sbjct: 10  RKVFIKTYGCQMNVYDSVRMSDALAKDGYVQTEDMGEADLVLLNTCHIREKAAEKVYSAL 69

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR+R++K SR ++G + ++ VAGCVAQAEGEEILRR+P V+VV+GPQTY+RLP+ L+R R
Sbjct: 70  GRLRDMKKSREEQGREFMIGVAGCVAQAEGEEILRRAPAVDVVIGPQTYHRLPDALKRVR 129

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G+RV++T+Y+VEDKFE L + +    R RGVTAFLT+QEGCDKFCTFCVVPYTRG E+S
Sbjct: 130 RGERVIETEYAVEDKFEHLPVAEKATLRSRGVTAFLTVQEGCDKFCTFCVVPYTRGSEVS 189

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R + Q+VDEA KL+D GV EITLLGQNVNAW+G+G  GEK   ++LLY L+EI GL RLR
Sbjct: 190 RPVRQIVDEAMKLVDAGVREITLLGQNVNAWQGEGPKGEKWGLAELLYRLAEIPGLARLR 249

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           YTTSHPRDM D LI AH DL +LMPYLHLPVQSGSDRILK+MNRRHT  EY Q+I++IRS
Sbjct: 250 YTTSHPRDMDDRLIGAHRDLRILMPYLHLPVQSGSDRILKAMNRRHTGEEYIQLIEKIRS 309

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
            RPDIA+S DFIVGFPGETD DF  TM +V+ + YAQAFSFKYS R GTPG+++ +QV E
Sbjct: 310 ARPDIAMSGDFIVGFPGETDRDFEDTMAMVETVKYAQAFSFKYSTRPGTPGADLTDQVAE 369

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
           +VKAERL  LQ  L  QQ  F ++ VG+ ++VL+EK G+   +L+GRSPWLQSV L++K 
Sbjct: 370 DVKAERLERLQALLLRQQKEFAESLVGKTMDVLLEKPGRMPEQLIGRSPWLQSVNLDAKT 429

Query: 445 HNIGDIIKVRITDVKISTLYGEL 467
             IGDI+ VRIT    ++L+ E+
Sbjct: 430 LKIGDIVNVRITATGPNSLFAEV 452


>gi|153008094|ref|YP_001369309.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Ochrobactrum
           anthropi ATCC 49188]
 gi|229890580|sp|A6WWX6|MIAB_OCHA4 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|151559982|gb|ABS13480.1| RNA modification enzyme, MiaB family [Ochrobactrum anthropi ATCC
           49188]
          Length = 462

 Score =  530 bits (1365), Expect = e-148,   Method: Composition-based stats.
 Identities = 270/442 (61%), Positives = 343/442 (77%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ FVK+YGCQMNVYDS RM D   ++GY   ++ DDADL++LNTCHIREKA+EK+YS L
Sbjct: 18  RKVFVKTYGCQMNVYDSQRMADSLAAEGYVATDTPDDADLVLLNTCHIREKASEKLYSAL 77

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR+R +K++R   G +L + VAGCVAQAEG+EILRR+P V++V+GPQTY+RLP  L R R
Sbjct: 78  GRLRKMKDAREANGKELTIGVAGCVAQAEGQEILRRAPNVDLVIGPQTYHRLPNALARVR 137

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G++VV+T+Y++EDKFE L        RKRGV+AFLT+QEGCDKFCTFCVVPYTRG E+S
Sbjct: 138 SGEKVVETEYALEDKFEHLPSPKREETRKRGVSAFLTVQEGCDKFCTFCVVPYTRGSEVS 197

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           RS+ Q+V EA +L D+GV E+TLLGQNVNAW G G DG +    +LL+ L+ I G+ RLR
Sbjct: 198 RSVKQIVAEAERLADSGVRELTLLGQNVNAWHGAGDDGREWGLGELLFRLARIPGIARLR 257

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           YTTSHPRDM D LI AH DL  LMPYLHLPVQSGSDRILK+MNRRH A EY ++I+RIR 
Sbjct: 258 YTTSHPRDMDDSLIAAHRDLRQLMPYLHLPVQSGSDRILKAMNRRHKADEYVRLIERIRE 317

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           VRPD+A+S DFIVGFPGETD DF  TM LV  + YAQA+SFKYSPR GTPG+++ + V+E
Sbjct: 318 VRPDLALSGDFIVGFPGETDQDFEDTMRLVRDVNYAQAYSFKYSPRPGTPGADLDDHVEE 377

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
            VK ERL  LQ  L EQQ +F D+ +G+ ++VL+EK G+  G++VGRSPWL  V+++  N
Sbjct: 378 AVKDERLQRLQALLSEQQYAFQDSMIGREMDVLLEKPGRVAGQMVGRSPWLLPVIIDDSN 437

Query: 445 HNIGDIIKVRITDVKISTLYGE 466
             +GDII V+IT    ++L  +
Sbjct: 438 DRVGDIIHVKITSTGTNSLIAQ 459


>gi|327188593|gb|EGE55803.1| putative 2-methylthioadenine synthetase (miaB-like) protein
           [Rhizobium etli CNPAF512]
          Length = 482

 Score =  529 bits (1363), Expect = e-148,   Method: Composition-based stats.
 Identities = 286/455 (62%), Positives = 354/455 (77%)

Query: 12  HMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCH 71
                ++      ++ F+K+YGCQMNVYDS RM D     GYE    M++ADL++LNTCH
Sbjct: 22  QAPEPMLRDGSNSRKVFIKTYGCQMNVYDSTRMSDALARDGYEPTEDMEEADLVLLNTCH 81

Query: 72  IREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ 131
           IREKAAEKVYS LGR+R +K  +  +G ++++ V GCVAQAEGEEILRR+P V+VV+GPQ
Sbjct: 82  IREKAAEKVYSALGRLREMKKKKAADGREMMIGVTGCVAQAEGEEILRRAPAVDVVIGPQ 141

Query: 132 TYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCT 191
           TY+RLPE L RA+ G+RVVDT+Y++EDKFE L I +    R RGVTAFLT+QEGCDKFCT
Sbjct: 142 TYHRLPEALRRAQQGQRVVDTEYAIEDKFEHLPIAESRKIRARGVTAFLTVQEGCDKFCT 201

Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLL 251
           FCVVPYTRG E+SR +SQ+V+EA KL++ GV EITLLGQNVNAW G G  GE  +  DLL
Sbjct: 202 FCVVPYTRGSEVSRPVSQIVEEAEKLVEAGVREITLLGQNVNAWHGAGPRGEAWSLGDLL 261

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
           Y L+EI GL RLRYTTSHPRDM D LI+AH DL  LMPYLHLPVQSGSDRILK+MNRRHT
Sbjct: 262 YRLAEIPGLARLRYTTSHPRDMDDRLIEAHRDLRALMPYLHLPVQSGSDRILKAMNRRHT 321

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
           A EY  +IDRIR+VRPDIA+S DFI GFPGETD DF  T+ LV+++ YAQAFSFKYS R 
Sbjct: 322 AAEYLSLIDRIRTVRPDIALSGDFITGFPGETDADFEDTLRLVEEVRYAQAFSFKYSTRP 381

Query: 372 GTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR 431
           GTPG+ + +QV E +KAERL  LQ  L +QQ  F ++C+G+ I++L+EK G+  G+L+GR
Sbjct: 382 GTPGAELKDQVPEEIKAERLERLQALLLKQQQEFAESCIGKEIDLLLEKPGRMPGQLIGR 441

Query: 432 SPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGE 466
           SPWLQSV +++K+  IGDIIKVRIT    ++L+ E
Sbjct: 442 SPWLQSVNVDAKSSQIGDIIKVRITGTGTNSLFAE 476


>gi|190890046|ref|YP_001976588.1| 2-methylthioadenine synthetase (miaB-like) protein [Rhizobium etli
           CIAT 652]
 gi|229890624|sp|B3PZB6|MIAB_RHIE6 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|190695325|gb|ACE89410.1| putative 2-methylthioadenine synthetase (miaB-like) protein
           [Rhizobium etli CIAT 652]
          Length = 469

 Score =  528 bits (1361), Expect = e-148,   Method: Composition-based stats.
 Identities = 285/455 (62%), Positives = 353/455 (77%)

Query: 12  HMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCH 71
                ++      ++ F+K+YGCQMNVYDS RM D     GYE    M++ADL++LNTCH
Sbjct: 9   QAPEPMLRDGSNSRKVFIKTYGCQMNVYDSTRMSDALARDGYEPTEDMEEADLVLLNTCH 68

Query: 72  IREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ 131
           IREKAAEKVYS LGR+R +K  +  +G ++++ V GCVAQAEGEEILRR+P V+VV+GPQ
Sbjct: 69  IREKAAEKVYSALGRLREMKKKKAADGREMMIGVTGCVAQAEGEEILRRAPAVDVVIGPQ 128

Query: 132 TYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCT 191
           TY+RLPE L RA+ G+RVVDT+Y++EDKFE L I +    R RGVTAFLT+QEGCDKFCT
Sbjct: 129 TYHRLPEALRRAQQGQRVVDTEYAIEDKFEHLPIAESRKIRARGVTAFLTVQEGCDKFCT 188

Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLL 251
           FCVVPYTRG E+SR +SQ+V+EA KL++ GV EITLLGQNVNAW G G  GE  +  DLL
Sbjct: 189 FCVVPYTRGSEVSRPVSQIVEEAEKLVEAGVREITLLGQNVNAWHGAGPRGEAWSLGDLL 248

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
           Y L+EI GL RLRYTTSHPRDM D LI+AH DL  LMPYLHLPVQSGSDRILK+MNRRHT
Sbjct: 249 YRLAEIPGLARLRYTTSHPRDMDDRLIEAHRDLRALMPYLHLPVQSGSDRILKAMNRRHT 308

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
           A EY  +I+RIR+VRPDIA+S DFI GFPGETD DF  T+ LV+++ YAQAFSFKYS R 
Sbjct: 309 AAEYLSLIERIRTVRPDIALSGDFITGFPGETDADFEDTLRLVEEVRYAQAFSFKYSTRP 368

Query: 372 GTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR 431
           GTPG+ + +QV E +KAERL  LQ  L +QQ  F ++C+G+ I++L+EK G+  G+L+GR
Sbjct: 369 GTPGAELKDQVPEEIKAERLERLQALLLKQQQEFAESCIGKEIDLLLEKPGRMPGQLIGR 428

Query: 432 SPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGE 466
           SPWLQSV +++K   IGDIIKVRIT    ++L+ E
Sbjct: 429 SPWLQSVNVDAKASQIGDIIKVRITGTGTNSLFAE 463


>gi|241202785|ref|YP_002973881.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Rhizobium
           leguminosarum bv. trifolii WSM1325]
 gi|240856675|gb|ACS54342.1| RNA modification enzyme, MiaB family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 473

 Score =  526 bits (1356), Expect = e-147,   Method: Composition-based stats.
 Identities = 287/460 (62%), Positives = 358/460 (77%)

Query: 7   LIGVAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIV 66
           L     + S  +      ++ F+K+YGCQMNVYDS+RM D     GYE  + M++ADL++
Sbjct: 8   LQAPEAIPSDSLHDGSNSRKVFIKTYGCQMNVYDSMRMSDALARDGYEPTDDMEEADLVL 67

Query: 67  LNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNV 126
           LNTCHIREKAAEKVYS LGR+R++K  +  +G ++++ VAGCVAQAEGEEILRR+P V+V
Sbjct: 68  LNTCHIREKAAEKVYSALGRLRDMKKKKAADGREMMIGVAGCVAQAEGEEILRRAPAVDV 127

Query: 127 VVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGC 186
           V+GPQTY+RLPE L  A+ G+RVVDT+Y++EDKFE L I +    R RGVTAFLT+QEGC
Sbjct: 128 VIGPQTYHRLPEALRLAKQGQRVVDTEYAIEDKFEHLPIAESRRIRARGVTAFLTVQEGC 187

Query: 187 DKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT 246
           DKFCTFCVVPYTRG E+SR +SQ+V+EA KL D+GV EITLLGQNVNAW G G  GE  +
Sbjct: 188 DKFCTFCVVPYTRGSEVSRPVSQIVEEAEKLADSGVREITLLGQNVNAWHGAGPQGEAWS 247

Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306
             DLLY L+EI GL RLRYTTSHPRDM D LI AH DL  LMPYLHLPVQSGSDRILK+M
Sbjct: 248 LGDLLYRLAEIPGLARLRYTTSHPRDMDDRLINAHRDLSALMPYLHLPVQSGSDRILKAM 307

Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
           NRRHTA EY  +I+RIR+VRPDIA+S DFI GFPGETD+DF+ T+ LV+++ YAQAFSFK
Sbjct: 308 NRRHTAAEYLTLIERIRTVRPDIALSGDFITGFPGETDEDFKDTLRLVEEVRYAQAFSFK 367

Query: 367 YSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG 426
           YS R GTPG+ + +QV E +KAERL  LQ  L +QQ  F ++C+G+ I++L+EK G+   
Sbjct: 368 YSTRPGTPGAELKDQVPEEIKAERLERLQMLLLKQQQEFAESCIGKEIDLLLEKPGRMPE 427

Query: 427 KLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGE 466
           +L+GRSPWLQSV +++K   IGDIIKVRIT    ++L+ E
Sbjct: 428 QLIGRSPWLQSVNVDAKASQIGDIIKVRITGTGTNSLFAE 467


>gi|254470768|ref|ZP_05084171.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Pseudovibrio sp. JE062]
 gi|211959910|gb|EEA95107.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Pseudovibrio sp. JE062]
          Length = 470

 Score =  526 bits (1354), Expect = e-147,   Method: Composition-based stats.
 Identities = 267/455 (58%), Positives = 342/455 (75%)

Query: 14  VSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIR 73
            ++ +++    ++ F+K+YGCQMNVYDS RM D   + GYE+  + DDADL++LNTCHIR
Sbjct: 16  ATEALEKTEATRKVFIKTYGCQMNVYDSDRMNDALSNDGYEKTENPDDADLVILNTCHIR 75

Query: 74  EKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTY 133
           EKAAEKVYS LGRIR LK  + K+G  ++V VAGCVAQAEG EI RR+P+V++VVGPQ+Y
Sbjct: 76  EKAAEKVYSELGRIRKLKEEKAKDGKQMMVSVAGCVAQAEGAEISRRAPVVDLVVGPQSY 135

Query: 134 YRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC 193
           +RLPELL RA  G +VV+T++ ++DKF+ L+       RKRGVTAF+T+QEGCDKFCTFC
Sbjct: 136 HRLPELLTRASNGSKVVETEFDIQDKFKHLATPSKEAVRKRGVTAFVTVQEGCDKFCTFC 195

Query: 194 VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS 253
           VVPYTRG E+SR + Q+V E  +L   GV E+TLLGQNVNAW G+G DG +    +LL+ 
Sbjct: 196 VVPYTRGAEVSRKVEQIVMETERLAAAGVREVTLLGQNVNAWHGEGPDGREWGLGELLFR 255

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
           L++I G+ RLRYTTSHPRDM D LI AH DLD+LMPYLHLPVQSGSD ILK+MNR+HT  
Sbjct: 256 LAKIDGIERLRYTTSHPRDMEDSLIAAHRDLDILMPYLHLPVQSGSDAILKAMNRKHTRD 315

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
           +Y ++IDRIR  R DIA+S DFIVGFPGETD D + T+DL+ ++ Y  AFSFKYSPR GT
Sbjct: 316 DYFRLIDRIREARDDIALSGDFIVGFPGETDQDHKDTLDLIRRVTYGSAFSFKYSPRPGT 375

Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSP 433
           PG+ + EQ+DE VK+ERL  LQ+ L  QQ  FN + +G+ I+VL EK G+ +G+L GRSP
Sbjct: 376 PGATLEEQIDEQVKSERLAELQELLSTQQKDFNASLIGKTIDVLFEKEGRREGQLAGRSP 435

Query: 434 WLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           WLQ V +N+     G+I  V I     ++L G LV
Sbjct: 436 WLQPVHVNAPLDLYGEIRSVEIVAASANSLEGRLV 470


>gi|86356033|ref|YP_467925.1| putative 2-methylthioadenine synthetase (miaB-like) protein
           [Rhizobium etli CFN 42]
 gi|123724853|sp|Q2KD88|MIAB_RHIEC RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|86280135|gb|ABC89198.1| putative 2-methylthioadenine synthetase (miaB-like) protein
           [Rhizobium etli CFN 42]
          Length = 469

 Score =  525 bits (1352), Expect = e-147,   Method: Composition-based stats.
 Identities = 286/455 (62%), Positives = 353/455 (77%)

Query: 12  HMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCH 71
               Q +      ++ F+K+YGCQMNVYDS RM D     GYE    M++ADL++LNTCH
Sbjct: 9   KAPEQTLRDGSNSRKVFIKTYGCQMNVYDSTRMSDALARDGYEPTEDMEEADLVLLNTCH 68

Query: 72  IREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ 131
           IREKAAEKVYS LGR+R +K  +  +G ++++ VAGCVAQAEGEEILRR+P V+VV+GPQ
Sbjct: 69  IREKAAEKVYSALGRLREMKKKKAADGREMMIGVAGCVAQAEGEEILRRAPAVDVVIGPQ 128

Query: 132 TYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCT 191
           TY+RLPE L RA+ G+RVVDT+Y++EDKFE L + +    R RGVTAFLT+QEGCDKFCT
Sbjct: 129 TYHRLPEALRRAKEGQRVVDTEYAIEDKFEHLPVAESRKIRARGVTAFLTVQEGCDKFCT 188

Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLL 251
           FCVVPYTRG E+SR +SQ+V+EA KL++ GV EITLLGQNVNAW G G  GE  +  DLL
Sbjct: 189 FCVVPYTRGSEVSRPVSQIVEEAEKLVEGGVREITLLGQNVNAWHGAGPRGEAWSLGDLL 248

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
           Y L+EI GL RLRYTTSHPRDM D LI AH DL  LMPYLHLPVQSGSDRILK+MNRRHT
Sbjct: 249 YRLAEIPGLARLRYTTSHPRDMDDRLIAAHRDLRALMPYLHLPVQSGSDRILKAMNRRHT 308

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
           A EY  +I+RIR+VRPDIA+S DFI GFPGETD DF  T+ LV+++ YAQAFSFKYS R 
Sbjct: 309 AAEYLSLIERIRAVRPDIALSGDFITGFPGETDKDFEDTLRLVEEVRYAQAFSFKYSTRP 368

Query: 372 GTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR 431
           GTPG+ + +QV E +KAERL  LQ  L +QQ  F ++C+G+ I++L+EK G+  G+L+GR
Sbjct: 369 GTPGAELKDQVPEEIKAERLERLQALLLKQQQEFAESCIGKEIDLLLEKPGRMPGQLIGR 428

Query: 432 SPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGE 466
           SPWLQSV +++K   IGDIIKVRIT    ++L+ E
Sbjct: 429 SPWLQSVNVDAKASQIGDIIKVRITGTGTNSLFAE 463


>gi|218515353|ref|ZP_03512193.1| putative 2-methylthioadenine synthetase (miaB-like) protein
           [Rhizobium etli 8C-3]
          Length = 452

 Score =  524 bits (1351), Expect = e-146,   Method: Composition-based stats.
 Identities = 285/442 (64%), Positives = 351/442 (79%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F+K+YGCQMNVYDS RM D     GYE    M++ADL++LNTCHIREKAAEKVYS L
Sbjct: 5   RKVFIKTYGCQMNVYDSTRMSDALARDGYEPTEDMEEADLVLLNTCHIREKAAEKVYSAL 64

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR+R +K  +  +G ++++ V GCVAQAEGEEILRR+P V+VV+GPQTY+RLPE L RA+
Sbjct: 65  GRLREMKKKKAADGREMMIGVTGCVAQAEGEEILRRAPAVDVVIGPQTYHRLPEALRRAQ 124

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G+RVVDT+Y++EDKFE L I +    R RGVTAFLT+QEGCDKFCTFCVVPYTRG E+S
Sbjct: 125 QGQRVVDTEYAIEDKFEHLPIAESRKIRARGVTAFLTVQEGCDKFCTFCVVPYTRGSEVS 184

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R +SQ+V+EA KL++ GV EITLLGQNVNAW G G  GE  +  DLLY L+EI GL RLR
Sbjct: 185 RPVSQIVEEAEKLVEAGVREITLLGQNVNAWHGAGPRGEAWSLGDLLYRLAEIPGLARLR 244

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           YTTSHPRDM D LI+AH DL  LMPYLHLPVQSGSDRILK+MNRRHTA EY  +I+RIR+
Sbjct: 245 YTTSHPRDMDDRLIEAHRDLRALMPYLHLPVQSGSDRILKAMNRRHTAAEYLSLIERIRT 304

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           VRPDIA+S DFI GFPGETD DF  T+ LV+++ YAQAFSFKYS R GTPG+ + +QV E
Sbjct: 305 VRPDIALSGDFITGFPGETDADFEDTLRLVEEVRYAQAFSFKYSTRPGTPGAELKDQVPE 364

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
            +KAERL  LQ  L +QQ  F ++C+G+ I++L+EK G+  G+L+GRSPWLQSV +++K 
Sbjct: 365 EIKAERLERLQALLLKQQQEFAESCIGKEIDLLLEKPGRMPGQLIGRSPWLQSVNVDAKA 424

Query: 445 HNIGDIIKVRITDVKISTLYGE 466
             IGDIIKVRIT    ++L+ E
Sbjct: 425 SQIGDIIKVRITGTGTNSLFAE 446


>gi|116250164|ref|YP_766002.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Rhizobium
           leguminosarum bv. viciae 3841]
 gi|123082073|sp|Q1MMB6|MIAB_RHIL3 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|115254812|emb|CAK05886.1| putative MiaB protein (methylthiolation of isopentenylated A37
           derivatives in rRNA) [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 473

 Score =  524 bits (1351), Expect = e-146,   Method: Composition-based stats.
 Identities = 290/460 (63%), Positives = 358/460 (77%)

Query: 7   LIGVAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIV 66
           L     + S+ +      ++ F+K+YGCQMNVYDS+RM D     GYE    M+ ADL++
Sbjct: 8   LQAPEAIPSESLRDGSNSRKVFIKTYGCQMNVYDSMRMSDALARDGYEPTEDMEVADLVL 67

Query: 67  LNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNV 126
           LNTCHIREKAAEKVYS LGR+R +K  +  +G ++++ VAGCVAQAEGEEILRR+P V+V
Sbjct: 68  LNTCHIREKAAEKVYSALGRLREMKKKKAADGREMMIGVAGCVAQAEGEEILRRAPAVDV 127

Query: 127 VVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGC 186
           V+GPQTY+RLPE L RA+ G+RVVDT+Y++EDKFE L I +    R RGVTAFLT+QEGC
Sbjct: 128 VIGPQTYHRLPEALRRAKQGQRVVDTEYAIEDKFEHLPIAESRRIRARGVTAFLTVQEGC 187

Query: 187 DKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT 246
           DKFCTFCVVPYTRG E+SRS+SQ+V+EA KL D+GV EITLLGQNVNAW G G  GE  +
Sbjct: 188 DKFCTFCVVPYTRGSEVSRSVSQIVEEAEKLADSGVREITLLGQNVNAWHGAGSQGEAWS 247

Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306
             DLLY L+EI GL RLRYTTSHPRDM D LI AH DL  LMPYLHLPVQSGSDRILK+M
Sbjct: 248 LGDLLYRLAEIPGLARLRYTTSHPRDMDDRLINAHRDLSALMPYLHLPVQSGSDRILKAM 307

Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
           NRRHTA EY  +I+RIR+VRPDIA+S DFI GFPGETD+DF+ T+ LV+++ YAQAFSFK
Sbjct: 308 NRRHTAAEYLALIERIRTVRPDIALSGDFITGFPGETDEDFKDTLRLVEEVRYAQAFSFK 367

Query: 367 YSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG 426
           YS R GTPG+ + +QV E +KAERL  LQ  L +QQ  F ++CVG+ I++L+EK G+   
Sbjct: 368 YSTRPGTPGAELKDQVPEEIKAERLERLQMLLLKQQQEFAESCVGKEIDLLLEKPGRMPE 427

Query: 427 KLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGE 466
           +L+GRSPWLQSV +++K   IGDIIKVRIT    ++L+ E
Sbjct: 428 QLIGRSPWLQSVNVDAKASQIGDIIKVRITGTGTNSLFAE 467


>gi|319779782|ref|YP_004139258.1| RNA modification enzyme, MiaB family [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317165670|gb|ADV09208.1| RNA modification enzyme, MiaB family [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 469

 Score =  523 bits (1347), Expect = e-146,   Method: Composition-based stats.
 Identities = 275/447 (61%), Positives = 342/447 (76%)

Query: 21  CIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKV 80
               ++ F+K+YGCQMNVYDS RM D   + GY   +++ +ADL++LNTCHIREKAAEKV
Sbjct: 22  STAARKVFIKTYGCQMNVYDSQRMADALAADGYSATDAIGEADLVLLNTCHIREKAAEKV 81

Query: 81  YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140
           YS LGRIR++K  R   G ++LV VAGCVAQAEG EI+RRSP V++V+GPQTY+RLP++L
Sbjct: 82  YSELGRIRDMKAERALAGREMLVGVAGCVAQAEGAEIIRRSPAVDLVIGPQTYHRLPDVL 141

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
            R R G+++V+TDY++EDKFE L         KRGVTAFLT+QEGCDKFCTFCVVPYTRG
Sbjct: 142 ARVRGGEKIVETDYAIEDKFEHLPQPKRAEVIKRGVTAFLTVQEGCDKFCTFCVVPYTRG 201

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR ++Q+V EA +L + GV E+TLLGQNVNAW G+G +G +     LL+ L+EI GL
Sbjct: 202 SEVSRPVAQIVAEAERLAEAGVREVTLLGQNVNAWHGQGENGHEWGLGRLLFRLAEIPGL 261

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            RLRYTTSHPRDM D LI AH DL  LMPYLHLPVQSGSDRILK+MNRRHTA +Y  ++D
Sbjct: 262 ARLRYTTSHPRDMDDELIAAHRDLPSLMPYLHLPVQSGSDRILKAMNRRHTARDYLALLD 321

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           RIR+ RPDIA+S DFIVGFPGET+ DF ATM+LV ++ YA AFSFKYSPR GTPG+ M +
Sbjct: 322 RIRTARPDIALSGDFIVGFPGETEADFEATMELVRQVNYASAFSFKYSPRPGTPGAEMAD 381

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440
            V E VK ERL  LQ  L +QQ  F  + +G  I+ LIEK G++ G+ VGRSPWLQ V++
Sbjct: 382 HVPETVKDERLQRLQALLVKQQQDFGLSLIGSTIDTLIEKPGRQTGQKVGRSPWLQPVIV 441

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGEL 467
           + K   IGDII+VRIT    ++L+ EL
Sbjct: 442 DEKAGEIGDIIQVRITKTGYNSLFAEL 468


>gi|118590489|ref|ZP_01547891.1| hypothetical protein SIAM614_02901 [Stappia aggregata IAM 12614]
 gi|118436952|gb|EAV43591.1| hypothetical protein SIAM614_02901 [Stappia aggregata IAM 12614]
          Length = 491

 Score =  522 bits (1345), Expect = e-146,   Method: Composition-based stats.
 Identities = 268/445 (60%), Positives = 333/445 (74%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ FV++YGCQMNVYDS RM D+   +G+E  + ++DADL++LNTCHIREKAAEKVYS L
Sbjct: 31  RKVFVRTYGCQMNVYDSERMTDVLAPEGFEATDDLEDADLVILNTCHIREKAAEKVYSEL 90

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GRIR +K  R K G D++V VAGCVAQAEGEEI RR+PIV++VVGPQ+Y++LP LLE+AR
Sbjct: 91  GRIRKVKEERAKSGKDMMVGVAGCVAQAEGEEISRRAPIVDLVVGPQSYHQLPSLLEKAR 150

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G +VV+T++ ++ KF  LS        KR  +AFLT+QEGCDKFCTFCVVPYTRG E+S
Sbjct: 151 AGSKVVETEFDIDAKFNHLSERAEKQVLKRPPSAFLTVQEGCDKFCTFCVVPYTRGAEVS 210

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           RS+ Q+V EA ++   GV EITLLGQNVNA+ G   DG       LL  LSEI GL RLR
Sbjct: 211 RSVEQIVSEAERMAAVGVREITLLGQNVNAYHGASPDGAVWGLGRLLRRLSEIDGLDRLR 270

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           YTTSHPRDM D LI AH DL  LMPYLHLPVQSGSD+ILK+MNRRHT  EY ++IDRIR 
Sbjct: 271 YTTSHPRDMDDDLIAAHRDLKSLMPYLHLPVQSGSDKILKAMNRRHTRDEYFRLIDRIRE 330

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             PDIA+S DFIVGFPGE+D DF  TMDL+ ++GY  AFSFKYS R GTPG+ M +QV E
Sbjct: 331 AAPDIALSGDFIVGFPGESDQDFEDTMDLIRQVGYGSAFSFKYSSRPGTPGATMDDQVPE 390

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
           +VK+ RL  LQ  + EQQ +FN + +G   +VL+EK G+  G+LVG+SPWLQ V L++  
Sbjct: 391 DVKSARLAELQALVAEQQKAFNASRLGMTCDVLLEKTGRNPGQLVGKSPWLQPVQLDAPE 450

Query: 445 HNIGDIIKVRITDVKISTLYGELVV 469
             IG I  V I D+  ++L+G L+ 
Sbjct: 451 DLIGSIQAVEIVDIGSNSLFGRLIA 475


>gi|209547631|ref|YP_002279548.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Rhizobium
           leguminosarum bv. trifolii WSM2304]
 gi|229890625|sp|B5ZMY1|MIAB_RHILW RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|209533387|gb|ACI53322.1| RNA modification enzyme, MiaB family [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 469

 Score =  521 bits (1341), Expect = e-145,   Method: Composition-based stats.
 Identities = 285/442 (64%), Positives = 350/442 (79%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F+K+YGCQMNVYDS RM D     GYE    M++ADL++LNTCHIREKAAEKVYS L
Sbjct: 22  RKVFIKTYGCQMNVYDSTRMSDALARDGYEPTEDMEEADLVLLNTCHIREKAAEKVYSAL 81

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR+R++K  +  +G ++++ VAGCVAQAEGEEILRR+P V+VV+GPQTY+RLPE L RA+
Sbjct: 82  GRLRDMKKKKAADGREMMIGVAGCVAQAEGEEILRRAPAVDVVIGPQTYHRLPEALRRAK 141

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G+RVVDTDY++EDKFE L I +    R RGVTAFLT+QEGCDKFCTFCVVPYTRG E+S
Sbjct: 142 EGQRVVDTDYAIEDKFEHLPIAESRKIRARGVTAFLTVQEGCDKFCTFCVVPYTRGSEVS 201

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R ++Q+V+EA KL++ GV EITLLGQNVNAW G G  GE  +  DLLY L+EI GL RLR
Sbjct: 202 RPVAQIVEEAEKLVEGGVREITLLGQNVNAWHGAGPRGEAWSLGDLLYRLAEIPGLARLR 261

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           YTTSHPRDM D LI AH DL  LMPYLHLPVQSGSDRILK+MNRRHTA EY  +I RIR+
Sbjct: 262 YTTSHPRDMDDRLIDAHRDLRALMPYLHLPVQSGSDRILKAMNRRHTAAEYLSLIARIRT 321

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           VRPDIA+S DFI GFPGETD DF  T+ LV+++ YAQAFSFKYS R GTPG+ + +QV E
Sbjct: 322 VRPDIALSGDFITGFPGETDADFEDTLRLVEEVRYAQAFSFKYSTRPGTPGAELKDQVPE 381

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
            +KAERL  LQ  L +QQ  F ++C+G+ I++L+EK G+   +L+GRSPWLQSV +++K 
Sbjct: 382 QIKAERLERLQALLLKQQQEFAESCIGKEIDLLLEKPGRMPEQLIGRSPWLQSVNVDAKA 441

Query: 445 HNIGDIIKVRITDVKISTLYGE 466
             IGDIIKVRIT    ++L+ E
Sbjct: 442 SQIGDIIKVRITGTGNNSLFAE 463


>gi|158421632|ref|YP_001522924.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Azorhizobium
           caulinodans ORS 571]
 gi|229890445|sp|A8IG00|MIAB_AZOC5 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|158328521|dbj|BAF86006.1| conserved hypothetical protein [Azorhizobium caulinodans ORS 571]
          Length = 464

 Score =  517 bits (1331), Expect = e-144,   Method: Composition-based stats.
 Identities = 261/445 (58%), Positives = 330/445 (74%), Gaps = 3/445 (0%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P++ +VKS+GCQMNVYDS RM D    +GY       DADL++LNTCHIREKAAEKVYS 
Sbjct: 4   PRKLYVKSFGCQMNVYDSQRMADALAKEGYVETQDPADADLVILNTCHIREKAAEKVYSE 63

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR+R  K      G D  + VAGCVAQAEG EI++R+P+V++VVGPQ+Y+RLPE+L R 
Sbjct: 64  LGRLRKAKQD---AGSDTTIAVAGCVAQAEGAEIMKRAPVVDLVVGPQSYHRLPEMLARV 120

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           R GKRVVDT++  EDKF+ L        +KRG TAF+T+QEGCDKFCTFCVVPYTRG E+
Sbjct: 121 RDGKRVVDTEFPAEDKFDHLPAPSAAATKKRGPTAFVTVQEGCDKFCTFCVVPYTRGAEV 180

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SRS+S++V EAR L+D GV EITL+GQNVNA+ G+G DG       LL  L+ I GL RL
Sbjct: 181 SRSVSKIVGEARALVDQGVREITLIGQNVNAFHGEGPDGRTWGLGRLLEELAGINGLARL 240

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           RYTTSHPRDM D LI AH DL  LMPYLHLPVQSGSDRIL +MNR+H    Y +IID++R
Sbjct: 241 RYTTSHPRDMDDGLIAAHRDLPQLMPYLHLPVQSGSDRILAAMNRKHGREIYFEIIDKLR 300

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           + RPDIA+SSDFIVGFPGET+ DF  T+DL  ++G+A A+SFKYS R GTP +    Q+ 
Sbjct: 301 AARPDIALSSDFIVGFPGETEADFEDTLDLARRVGFASAYSFKYSIRPGTPAAEHDHQLS 360

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
           E VK+ERL  L + L   + +F+ AC+G+  ++L+EK G+  G+L+GRSP+LQSVV+ + 
Sbjct: 361 EEVKSERLARLHQVLEASKTAFDRACMGRRFDILLEKPGRLPGQLIGRSPYLQSVVVTAP 420

Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468
              IGD + V ITDV  ++L G++V
Sbjct: 421 GAGIGDFVTVDITDVGPNSLAGQVV 445


>gi|114706886|ref|ZP_01439786.1| hypothetical protein FP2506_18759 [Fulvimarina pelagi HTCC2506]
 gi|114537834|gb|EAU40958.1| hypothetical protein FP2506_18759 [Fulvimarina pelagi HTCC2506]
          Length = 505

 Score =  516 bits (1330), Expect = e-144,   Method: Composition-based stats.
 Identities = 266/442 (60%), Positives = 328/442 (74%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ FVK+YGCQMNVYDS RM D    +GYE  + ++DADL++LNTCHIREKAAEK+YS L
Sbjct: 42  RKVFVKTYGCQMNVYDSQRMGDALSGEGYEPTSIIEDADLVLLNTCHIREKAAEKIYSEL 101

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GRIR+LK  R + G    V VAGCVAQAEG EI+ R+P+V++V+GPQTY+RLP+ L RA 
Sbjct: 102 GRIRDLKAERAERGLKTQVAVAGCVAQAEGREIISRAPVVDLVIGPQTYHRLPQALTRAA 161

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G++VV+TDY+VEDKFE L   +    R RGVTAFLT+QEGCDKFCTFCVVPYTRG E+S
Sbjct: 162 GGEKVVETDYAVEDKFEALPQSERRQIRGRGVTAFLTVQEGCDKFCTFCVVPYTRGAEVS 221

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R  +Q+VDEA+ L D GV E+TLLGQNVNAW G+   G+      LL+ L++I G+ RLR
Sbjct: 222 RPFAQIVDEAKALSDAGVREVTLLGQNVNAWDGEDEAGKPIGLGGLLHRLADIPGIARLR 281

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           YTTSHPRDM   LI AH DL  LMPYLHLPVQSGSD ILK+MNRRHTA +Y +++D IR 
Sbjct: 282 YTTSHPRDMDAELIAAHRDLLSLMPYLHLPVQSGSDSILKAMNRRHTAEDYLRVLDTIRE 341

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
            RPDIA+S DFIVGFPGETD DF ATM LV ++ YA AF+FKYSPR GTPG+ M   ++E
Sbjct: 342 ARPDIALSGDFIVGFPGETDADFEATMRLVREVRYASAFTFKYSPRPGTPGAEMDGHIEE 401

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
            VK  RL  L   LRE Q  F ++ VG+ + VLIEK G+   ++ GRSP+LQ VVL    
Sbjct: 402 AVKDTRLQALNALLREHQAEFAESLVGKSLSVLIEKPGRHPRQIAGRSPYLQPVVLPEGM 461

Query: 445 HNIGDIIKVRITDVKISTLYGE 466
             IGDI++ +IT    ++L  E
Sbjct: 462 GAIGDIVEAKITSTGPNSLLAE 483


>gi|254501345|ref|ZP_05113496.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Labrenzia alexandrii
           DFL-11]
 gi|222437416|gb|EEE44095.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Labrenzia alexandrii
           DFL-11]
          Length = 486

 Score =  516 bits (1329), Expect = e-144,   Method: Composition-based stats.
 Identities = 263/445 (59%), Positives = 334/445 (75%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ FV++YGCQMNVYDS RM D+   QGY     M++ADL++LNTCHIREKAAEKVYS L
Sbjct: 26  RKVFVRTYGCQMNVYDSERMTDVLAPQGYSTTADMEEADLVILNTCHIREKAAEKVYSEL 85

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GRIR +K  R K G D++V VAGCVAQAEGEEI RR+PIV++VVGPQ+Y++LP LL++AR
Sbjct: 86  GRIRKVKEERAKAGKDMMVGVAGCVAQAEGEEISRRAPIVDMVVGPQSYHQLPSLLDKAR 145

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G++VV+T++ ++ KF+ LS        KR   AFLT+QEGCDKFCTFCVVPYTRG E+S
Sbjct: 146 QGQKVVETEFDIDAKFDHLSARAEKPIMKRPPAAFLTVQEGCDKFCTFCVVPYTRGAEVS 205

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           RS+ Q+V EA+++  +GV E+TLLGQNVNA+ G+  DG       LL  LSEI GL RLR
Sbjct: 206 RSVEQIVTEAQRMAASGVREVTLLGQNVNAYHGEAADGSTWGLGKLLRRLSEIDGLDRLR 265

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           YTTSHPRDM D LI+AH +L  LMPYLHLPVQSGSD+ILK+MNR+HT  EY ++IDRIR 
Sbjct: 266 YTTSHPRDMDDDLIEAHRELKSLMPYLHLPVQSGSDKILKAMNRKHTRDEYFRLIDRIRV 325

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             PDIA+S DFI+GFPGETD DF  TMDL+ ++ Y  AFSFKYS R GTPG+ M +QV E
Sbjct: 326 AAPDIALSGDFIIGFPGETDQDFEDTMDLIRRVEYGSAFSFKYSQRPGTPGATMEDQVPE 385

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
           +VK+ RL  LQ  L EQQ +FN +  G   +VL+EK G+  G+LVG+SPWLQ V L++  
Sbjct: 386 DVKSVRLQELQALLSEQQKAFNASRKGMTCDVLLEKKGRNPGQLVGKSPWLQPVQLDAPE 445

Query: 445 HNIGDIIKVRITDVKISTLYGELVV 469
             IG +  V I ++  ++L+G L+ 
Sbjct: 446 SMIGSVQAVEIVEIGSNSLFGRLIA 470


>gi|90420542|ref|ZP_01228449.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90335270|gb|EAS49023.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 483

 Score =  514 bits (1325), Expect = e-144,   Method: Composition-based stats.
 Identities = 268/453 (59%), Positives = 333/453 (73%)

Query: 13  MVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHI 72
             ++  +  I  ++ F+K+YGCQMNVYDS RM D     GY+    ++DADL++LNTCHI
Sbjct: 6   AATRPDETGINTRKVFIKTYGCQMNVYDSQRMGDALARDGYQPTEVIEDADLVLLNTCHI 65

Query: 73  REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT 132
           RE+AAEK+YS LGRI+ LK  + ++G ++ V VAGCVAQAEG+EI+ R+P+V++V+GPQT
Sbjct: 66  RERAAEKIYSELGRIKLLKAEKAEQGVEMRVAVAGCVAQAEGQEIIDRAPVVDLVIGPQT 125

Query: 133 YYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTF 192
           Y+RLPE L R   G +VV+TDY+VEDKF  L  V     R RGVTAFLT+QEGCDKFCTF
Sbjct: 126 YHRLPEALARVARGDKVVETDYAVEDKFRHLPKVTAPQIRTRGVTAFLTVQEGCDKFCTF 185

Query: 193 CVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLY 252
           CVVPYTRG E+SR L+Q++ EAR L   GV E+TLLGQNVN W G+   G       LL 
Sbjct: 186 CVVPYTRGSEVSRPLTQIMGEARTLAAAGVREVTLLGQNVNGWSGQDEAGRDIGLGGLLR 245

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
           +L+EI G  RLRYTTSHPRDM D LI AH DL  LMPYLHLPVQSGSDRILK+MNRRHT 
Sbjct: 246 ALAEIPGFARLRYTTSHPRDMDDDLIAAHRDLPALMPYLHLPVQSGSDRILKAMNRRHTG 305

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
            +Y +++DRIR  RPDIA+S DFIVGFPGETD DF  TM+LV ++ YA AFSFKYS R G
Sbjct: 306 ADYLRLLDRIRQARPDIALSGDFIVGFPGETDADFEDTMELVSEVRYASAFSFKYSARPG 365

Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS 432
           TPG+ M + VDE VK+ERL  LQ  LRE QV F ++ VG+ I+VL+EK G+   + VGRS
Sbjct: 366 TPGATMDDHVDEAVKSERLQRLQTLLREHQVDFAESLVGRDIDVLVEKPGRYPHQRVGRS 425

Query: 433 PWLQSVVLNSKNHNIGDIIKVRITDVKISTLYG 465
           P+LQ VVL++    IGDI+ VRI     ++L  
Sbjct: 426 PFLQPVVLDAAAGEIGDIVTVRIESTLPNSLLA 458


>gi|154245754|ref|YP_001416712.1| RNA modification protein [Xanthobacter autotrophicus Py2]
 gi|154159839|gb|ABS67055.1| RNA modification enzyme, MiaB family [Xanthobacter autotrophicus
           Py2]
          Length = 496

 Score =  514 bits (1325), Expect = e-143,   Method: Composition-based stats.
 Identities = 252/442 (57%), Positives = 332/442 (75%), Gaps = 3/442 (0%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P++ +VKS+GCQMNVYDS RM D    +G+       +ADL++LNTCHIREKAAEKVYS 
Sbjct: 30  PRKLYVKSFGCQMNVYDSHRMADTLAREGFVETQDPAEADLVILNTCHIREKAAEKVYSE 89

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR+R  K      G D ++ VAGCVAQAEG EI+RR+P+V++VVGPQ+Y+RLPELL  A
Sbjct: 90  LGRLRKQKQE---AGSDTMIAVAGCVAQAEGAEIMRRAPVVDLVVGPQSYHRLPELLAEA 146

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           + GKRVVDT++  EDKF+ L        R RG  AF+T+QEGCDKFCTFCVVPYTRG E+
Sbjct: 147 KAGKRVVDTEFPAEDKFDHLPAPTRAATRSRGPAAFVTVQEGCDKFCTFCVVPYTRGAEV 206

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR +++++DEA +L+D GV EI+L+GQNVNA+ G G DG   + + L+  ++ + GL RL
Sbjct: 207 SRPVAKIMDEAARLVDQGVREISLIGQNVNAFHGAGPDGTTWSLARLMEHMARLDGLARL 266

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           RYTTSHPRDM D LI AH DL  LMPYLHLPVQSGSDRIL +MNR+H   ++  II+++R
Sbjct: 267 RYTTSHPRDMDDDLIAAHRDLPQLMPYLHLPVQSGSDRILAAMNRKHGRDDFFAIIEKMR 326

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
             RPD+A+SSDFIVGFPGE++ DF  T+DLV ++G+A A+SFKYSPR GTP ++   QV 
Sbjct: 327 QARPDMALSSDFIVGFPGESEKDFEDTLDLVRRVGFASAYSFKYSPRPGTPAADHDAQVP 386

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
           E VKAERL  LQ+ L   + +F+++C G+  ++L+EK G++ G+L+GRSP+LQSVV+N  
Sbjct: 387 EEVKAERLAELQRLLEASKAAFDESCRGRTFDILLEKPGRQAGQLIGRSPYLQSVVVNDP 446

Query: 444 NHNIGDIIKVRITDVKISTLYG 465
              IGD++ V ITDV  ++L G
Sbjct: 447 PAAIGDLLTVTITDVGPNSLAG 468


>gi|229891225|sp|A7IGB2|MIAB_XANP2 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
          Length = 470

 Score =  514 bits (1324), Expect = e-143,   Method: Composition-based stats.
 Identities = 252/442 (57%), Positives = 332/442 (75%), Gaps = 3/442 (0%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P++ +VKS+GCQMNVYDS RM D    +G+       +ADL++LNTCHIREKAAEKVYS 
Sbjct: 4   PRKLYVKSFGCQMNVYDSHRMADTLAREGFVETQDPAEADLVILNTCHIREKAAEKVYSE 63

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR+R  K      G D ++ VAGCVAQAEG EI+RR+P+V++VVGPQ+Y+RLPELL  A
Sbjct: 64  LGRLRKQKQE---AGSDTMIAVAGCVAQAEGAEIMRRAPVVDLVVGPQSYHRLPELLAEA 120

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           + GKRVVDT++  EDKF+ L        R RG  AF+T+QEGCDKFCTFCVVPYTRG E+
Sbjct: 121 KAGKRVVDTEFPAEDKFDHLPAPTRAATRSRGPAAFVTVQEGCDKFCTFCVVPYTRGAEV 180

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR +++++DEA +L+D GV EI+L+GQNVNA+ G G DG   + + L+  ++ + GL RL
Sbjct: 181 SRPVAKIMDEAARLVDQGVREISLIGQNVNAFHGAGPDGTTWSLARLMEHMARLDGLARL 240

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           RYTTSHPRDM D LI AH DL  LMPYLHLPVQSGSDRIL +MNR+H   ++  II+++R
Sbjct: 241 RYTTSHPRDMDDDLIAAHRDLPQLMPYLHLPVQSGSDRILAAMNRKHGRDDFFAIIEKMR 300

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
             RPD+A+SSDFIVGFPGE++ DF  T+DLV ++G+A A+SFKYSPR GTP ++   QV 
Sbjct: 301 QARPDMALSSDFIVGFPGESEKDFEDTLDLVRRVGFASAYSFKYSPRPGTPAADHDAQVP 360

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
           E VKAERL  LQ+ L   + +F+++C G+  ++L+EK G++ G+L+GRSP+LQSVV+N  
Sbjct: 361 EEVKAERLAELQRLLEASKAAFDESCRGRTFDILLEKPGRQAGQLIGRSPYLQSVVVNDP 420

Query: 444 NHNIGDIIKVRITDVKISTLYG 465
              IGD++ V ITDV  ++L G
Sbjct: 421 PAAIGDLLTVTITDVGPNSLAG 442


>gi|328545928|ref|YP_004306037.1| 2-methylthioadenine synthetase (MiaB-like) protein [polymorphum
           gilvum SL003B-26A1]
 gi|326415668|gb|ADZ72731.1| 2-methylthioadenine synthetase (MiaB-like) protein [Polymorphum
           gilvum SL003B-26A1]
          Length = 485

 Score =  514 bits (1323), Expect = e-143,   Method: Composition-based stats.
 Identities = 258/465 (55%), Positives = 335/465 (72%), Gaps = 10/465 (2%)

Query: 13  MVSQIVDQCIVP----------QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDA 62
           M S+  +  I+P          ++ FV++YGCQMNVYDS RM ++   QGY +  +++DA
Sbjct: 1   MTSRSTNNKILPAGEIAGGAAGRKVFVRTYGCQMNVYDSGRMAEVLAPQGYSQTETLEDA 60

Query: 63  DLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSP 122
           DL++LNTCHIREKAAEKVYS LGR+R +K+ R + G   L+ VAGCVAQAEGEEI RR+P
Sbjct: 61  DLVILNTCHIREKAAEKVYSELGRLRKIKDERARAGKPTLIGVAGCVAQAEGEEISRRAP 120

Query: 123 IVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTI 182
           +V++V GPQ+Y+RLP+LL RA  G +VV+T++ +++KFE L+         R  +AFLT+
Sbjct: 121 VVDLVFGPQSYHRLPDLLVRAAGGAKVVETEFDIDEKFEHLAEQSKRMPLARAASAFLTV 180

Query: 183 QEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG 242
           QEGCDKFCTFCVVPYTRG E+SR L Q++ EA  L   GV EITLLGQNVNAW G+G DG
Sbjct: 181 QEGCDKFCTFCVVPYTRGAEVSRPLGQILQEAEGLAAAGVREITLLGQNVNAWHGEGPDG 240

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
                  LL  L+E+ GL RLRYTTSHPRDM D LI AH D+  LMPYLHLPVQSGSDRI
Sbjct: 241 RPWGLGRLLRRLAEVDGLDRLRYTTSHPRDMDDELIAAHRDMPELMPYLHLPVQSGSDRI 300

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           L +MNR+H   +Y +++DRIR   P +A+S DFIVGFPGETD DF  TMDLV ++GYA  
Sbjct: 301 LAAMNRKHGRDDYFRLVDRIREASPGLALSGDFIVGFPGETDADFADTMDLVRRVGYASC 360

Query: 363 FSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422
           FSFKYS R GTPG+ M +Q+ E VK+ RL  LQ  L +QQ +FN + +G   +VL+EK G
Sbjct: 361 FSFKYSQRPGTPGAAMADQLPEAVKSTRLAELQTLLSDQQRAFNASRLGITCDVLLEKKG 420

Query: 423 KEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
           ++ G+L G+SPWLQ+V +++ +  IG I  V I D+  ++L+G L
Sbjct: 421 RQAGQLTGKSPWLQAVQVDAPDALIGTIQPVEIVDIGANSLFGRL 465


>gi|170747073|ref|YP_001753333.1| RNA modification protein [Methylobacterium radiotolerans JCM 2831]
 gi|229890617|sp|B1LWE8|MIAB_METRJ RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|170653595|gb|ACB22650.1| RNA modification enzyme, MiaB family [Methylobacterium
           radiotolerans JCM 2831]
          Length = 445

 Score =  511 bits (1317), Expect = e-143,   Method: Composition-based stats.
 Identities = 253/444 (56%), Positives = 330/444 (74%), Gaps = 6/444 (1%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ FVKSYGCQMN YD+ RM D+  ++GY   ++++DAD++VLNTCHIREKAAEKVYS L
Sbjct: 2   KKAFVKSYGCQMNAYDAARMADVLGAEGYTATDTVEDADVVVLNTCHIREKAAEKVYSEL 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR+R LK  R  +G D  +VVAGCVAQAEG EI  R P V+VVVGPQ+Y+RLP+LL R+R
Sbjct: 62  GRLRVLKGERKAQGLDTRIVVAGCVAQAEGAEIQARQPAVDVVVGPQSYHRLPDLLARSR 121

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
             +RVVDT++ VEDKF+ L        R  G +AFLT+QEGCDKFC FCVVPYTRG E+S
Sbjct: 122 E-RRVVDTEFPVEDKFDHLP-----RRRTLGASAFLTVQEGCDKFCAFCVVPYTRGAEVS 175

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           RS++ V+ EA KL D GV EITL+GQNVNA+ G G DG     +DL+ ++++I G+ R+R
Sbjct: 176 RSVAAVLAEAEKLADGGVREITLIGQNVNAYHGDGPDGAPAGLADLVRAVAKIPGIARIR 235

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           YTTSHP D  D LI+AH ++  LMPYLHLPVQSGSDRIL +MNR+HT   YR++IDRIR+
Sbjct: 236 YTTSHPNDFDDALIRAHAEVPALMPYLHLPVQSGSDRILAAMNRKHTGDAYRRLIDRIRA 295

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
            RPDIA+SSDFIVGFPGETD DF  T+ LV  +G+  AFSFKYS R GTP ++  +QV E
Sbjct: 296 ARPDIALSSDFIVGFPGETDADFAETLRLVRDVGFESAFSFKYSTRPGTPAADRTDQVPE 355

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
            V A RL  LQ  L  Q+ ++  A  G++ +VL+EK G+  G++ G++P L +V  ++  
Sbjct: 356 AVMAARLAELQALLDSQRHAYQRAAAGRVFDVLVEKRGRHPGQVAGKTPHLLAVQFDAAP 415

Query: 445 HNIGDIIKVRITDVKISTLYGELV 468
           H+IG ++ VRIT+   ++L+GELV
Sbjct: 416 HHIGQVVPVRITEAGSNSLFGELV 439


>gi|188582640|ref|YP_001926085.1| (dimethylallyl)adenosine tRNA methylthiotransferase
           [Methylobacterium populi BJ001]
 gi|229890615|sp|B1ZJR5|MIAB_METPB RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|179346138|gb|ACB81550.1| RNA modification enzyme, MiaB family [Methylobacterium populi
           BJ001]
          Length = 446

 Score =  511 bits (1316), Expect = e-142,   Method: Composition-based stats.
 Identities = 260/444 (58%), Positives = 335/444 (75%), Gaps = 6/444 (1%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ +VKSYGCQMN YD+ RM D+  ++GY    S+++AD++VLNTCHIREKAAEKVYS L
Sbjct: 2   KKAYVKSYGCQMNAYDAGRMADVLAAEGYSATESVEEADVVVLNTCHIREKAAEKVYSEL 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR+R LK  R + G D  +VVAGCVAQAEG EIL R+P V+VVVGPQ+Y+RLP+LL ++R
Sbjct: 62  GRLRVLKGERAESGQDTRIVVAGCVAQAEGREILSRAPAVDVVVGPQSYHRLPDLLRQSR 121

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
              RVVDT++ VEDKF+ L        R RGVT FLT+QEGCDKFC FCVVPYTRG E+S
Sbjct: 122 E-TRVVDTEFPVEDKFDHLP-----ARRNRGVTGFLTVQEGCDKFCAFCVVPYTRGAEVS 175

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           RS++ VV+EAR+L++ GV EITL+GQNVNA+ G G DG   T   L+ +LS + GL+RLR
Sbjct: 176 RSVAAVVEEARRLVEGGVREITLIGQNVNAYHGDGPDGAPATLGHLMDALSAVPGLLRLR 235

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           YTTSHP D +D LI AH    ++MPYLHLPVQSGSDRIL +MNRRHT   YR++I+RIR+
Sbjct: 236 YTTSHPNDFADDLIAAHAGNPLVMPYLHLPVQSGSDRILHAMNRRHTGDAYRRLIERIRT 295

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
            RPDIA+SSDFIVGFPGE+D DF  TM LV +IG+A AFSFKYSPR GTP +   + V E
Sbjct: 296 ARPDIALSSDFIVGFPGESDADFAETMRLVAEIGFAAAFSFKYSPRAGTPAAEREDAVPE 355

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
            VK ERL  LQ+ L +Q+ +FN A VG + E+L+EK G+  G++ G++P LQ+V  ++  
Sbjct: 356 AVKTERLAALQQLLDQQRHAFNAAAVGTVAEILVEKTGRHPGQVAGKTPHLQAVQFDAPA 415

Query: 445 HNIGDIIKVRITDVKISTLYGELV 468
             IG ++ VRIT    ++L+GE++
Sbjct: 416 STIGTLVPVRITRAGSNSLFGEVL 439


>gi|163867522|ref|YP_001608721.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bartonella
           tribocorum CIP 105476]
 gi|229890428|sp|A9IMW7|MIAB_BART1 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|161017168|emb|CAK00726.1| bifunctional enzyme [Bartonella tribocorum CIP 105476]
          Length = 458

 Score =  510 bits (1314), Expect = e-142,   Method: Composition-based stats.
 Identities = 265/456 (58%), Positives = 342/456 (75%), Gaps = 2/456 (0%)

Query: 12  HMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCH 71
           + V+      + P++ F+K+YGCQMNVYDS RM D   SQGY    + +DADLI++NTCH
Sbjct: 2   NKVNPKNTSPVAPKKVFIKTYGCQMNVYDSQRMTDSLSSQGYVTTQTPNDADLILVNTCH 61

Query: 72  IREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ 131
           IREKAAEK+YS LGR+R ++  R  +   L V V GCVAQAEG EILRR+PIV++V+GPQ
Sbjct: 62  IREKAAEKLYSDLGRLRVMRQERTPDKP-LTVGVTGCVAQAEGSEILRRAPIVDLVIGPQ 120

Query: 132 TYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCT 191
            Y+RLPELLE+A+ GK++++TDY+VEDKF  L   +    RKRGV+AFLT+QEGCDKFCT
Sbjct: 121 MYHRLPELLEKAKQGKKIIETDYAVEDKFAHLPPHNKRAVRKRGVSAFLTVQEGCDKFCT 180

Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLL 251
           FCVVPYTRG EISRS+ Q+ +EAR+LI+ GV EITLLGQNVN W G+  DG+     DLL
Sbjct: 181 FCVVPYTRGAEISRSVEQITEEARQLIEAGVKEITLLGQNVNGWHGQSADGKTWRLGDLL 240

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
           Y L+++ GL RLRYTTSHPRDM D LI AH DLD+LMPYLHLPVQSGSDRILK+MNR+H 
Sbjct: 241 YHLAKLDGLKRLRYTTSHPRDMDDSLIAAHRDLDMLMPYLHLPVQSGSDRILKAMNRQHK 300

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
           +  Y  +I++IR+ RPDIA S DFIVGFPGETD+DF  T+ L+ ++ Y+ A+SFKYSPR 
Sbjct: 301 SSYYLHLIEKIRAARPDIAFSGDFIVGFPGETDEDFEETIKLIQQVQYSSAYSFKYSPRP 360

Query: 372 GTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR 431
           GT G+ M   VDE+VK  RL  LQ  L EQQ +F  + +GQ  +VLIEK G+  G++VGR
Sbjct: 361 GTVGATMKNHVDESVKDARLQHLQVLLLEQQNTFLRSKIGQKTDVLIEKPGRHSGQMVGR 420

Query: 432 SPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
           SPWL  VV+++   + G ++++ I +   ++  GE+
Sbjct: 421 SPWLLPVVVDT-ESSTGSVVEIHIKNASSNSFVGEM 455


>gi|90421992|ref|YP_530362.1| tRNA-i(6)A37 modification enzyme MiaB [Rhodopseudomonas palustris
           BisB18]
 gi|123395291|sp|Q21C43|MIAB_RHOPB RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|90104006|gb|ABD86043.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Rhodopseudomonas
           palustris BisB18]
          Length = 473

 Score =  509 bits (1312), Expect = e-142,   Method: Composition-based stats.
 Identities = 241/446 (54%), Positives = 321/446 (71%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P++  +KS+GCQMNVYD+ RM D    +G+    + D+ADL++LNTCHIREKA+EKVYS 
Sbjct: 4   PRKLHIKSFGCQMNVYDAQRMVDALAPEGFVETANADEADLVILNTCHIREKASEKVYSE 63

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR+R  K+    +G  + + VAGCVAQAEG EI+RR P V+VVVGPQ+Y+ LP+LL  A
Sbjct: 64  LGRLRVAKDEAALQGRRMNIAVAGCVAQAEGAEIIRRQPAVDVVVGPQSYHHLPQLLAEA 123

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             G R ++T++ V+DKF  L        R RG++AF+T+QEGCDKFCTFCVVPYTRG E+
Sbjct: 124 ARGGRALETEFPVDDKFGFLPPPQPDAIRARGISAFVTVQEGCDKFCTFCVVPYTRGAEV 183

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR + ++V++ R+L DNGV EITL+GQNVNA+ G G DG       LL+ L++I G+VRL
Sbjct: 184 SRPVDKIVEDVRRLADNGVREITLIGQNVNAYHGDGPDGRPWPLGALLHHLAKIPGIVRL 243

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           RY+TSHPRD+   LI AH DL  LMP++HLPVQSGSD IL +MNR+H+A +YR+++DR R
Sbjct: 244 RYSTSHPRDVDQSLIDAHRDLPALMPFVHLPVQSGSDAILAAMNRKHSADDYRRLVDRFR 303

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           S  P IA SSDFIVGFPGETD+DF AT+ LV +IGYA A+SFKYSPR GTP + + E V 
Sbjct: 304 SANPAIAFSSDFIVGFPGETDEDFAATLALVTQIGYAGAYSFKYSPRPGTPAAELQETVS 363

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
             V  ERL+ LQ+ +  QQ +FN A +G  +EVL E+  +  G++VGR+ +LQ   + + 
Sbjct: 364 AAVMDERLVRLQELIDSQQAAFNAAVIGTTVEVLFERAARNPGQIVGRTAYLQPAHVMAA 423

Query: 444 NHNIGDIIKVRITDVKISTLYGELVV 469
              IG ++ VRI  ++  +L GEL  
Sbjct: 424 PDIIGQVLPVRIDSLERYSLIGELAA 449


>gi|240849891|ref|YP_002971280.1| RNA modification enzyme, MiaB family [Bartonella grahamii as4aup]
 gi|240267014|gb|ACS50602.1| RNA modification enzyme, MiaB family [Bartonella grahamii as4aup]
          Length = 458

 Score =  508 bits (1309), Expect = e-142,   Method: Composition-based stats.
 Identities = 264/449 (58%), Positives = 337/449 (75%), Gaps = 2/449 (0%)

Query: 19  DQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAE 78
              + P++ F+K+YGCQMNVYDS RM D   SQGY      +DADLI++NTCHIREKAAE
Sbjct: 9   TPPVAPKKVFIKTYGCQMNVYDSQRMTDSLSSQGYVTTQIPNDADLILVNTCHIREKAAE 68

Query: 79  KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPE 138
           K+YS LGR+R ++  R  +   L+V V GCVAQAEG EILRR+P V++V+GPQ Y+RLPE
Sbjct: 69  KLYSDLGRLRVMRQERTPDKP-LMVGVTGCVAQAEGSEILRRAPTVDLVIGPQMYHRLPE 127

Query: 139 LLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
           LLE+A+ GK++++TDY+VEDKF  L   +    RKRGV+AFLT+QEGCDKFCTFCVVPYT
Sbjct: 128 LLEKAKQGKKIIETDYAVEDKFAHLPPHNKHAVRKRGVSAFLTVQEGCDKFCTFCVVPYT 187

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258
           RG EISRS+ Q+ +EA +LI+ GV EITLLGQNVN W G+  DG+     DLLY L+++ 
Sbjct: 188 RGAEISRSVEQITEEALQLIEAGVKEITLLGQNVNGWHGQSADGKTWRLGDLLYHLAKLD 247

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           GL RLRYTTSHPRDM D LI AH DLD+LMPYLHLPVQSGSDRILK+MNR+H +  Y  +
Sbjct: 248 GLKRLRYTTSHPRDMDDSLIAAHRDLDMLMPYLHLPVQSGSDRILKAMNRQHKSSHYLHL 307

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           I++IR+ RPDIA S DFIVGFPGETD+DF  T+ L+ ++ Y+ A+SFKYSPR GT G+ M
Sbjct: 308 IEKIRTARPDIAFSGDFIVGFPGETDEDFEETIKLIQQVQYSSAYSFKYSPRPGTVGATM 367

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSV 438
              VDE+VK  RL  LQ  L EQQ +F  + +GQ   VLIEK G+  G++VGRSPWL  V
Sbjct: 368 KNHVDESVKDARLQHLQVLLLEQQNAFLRSKIGQKTNVLIEKPGRHSGQMVGRSPWLLPV 427

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGEL 467
           V+++   +IG +I++ I +   ++  GE+
Sbjct: 428 VVDT-EASIGSVIEIHIKNASSNSFVGEV 455


>gi|83944995|ref|ZP_00957361.1| hypothetical protein OA2633_10209 [Oceanicaulis alexandrii
           HTCC2633]
 gi|83851777|gb|EAP89632.1| hypothetical protein OA2633_10209 [Oceanicaulis alexandrii
           HTCC2633]
          Length = 468

 Score =  507 bits (1307), Expect = e-141,   Method: Composition-based stats.
 Identities = 247/450 (54%), Positives = 313/450 (69%), Gaps = 8/450 (1%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +R F+K+YGCQMNVYDS RM D+    GYE  +  D ADL++LNTCHIREKAAEKVYS L
Sbjct: 16  KRLFIKTYGCQMNVYDSERMRDVLAPLGYEPADEPDGADLVILNTCHIREKAAEKVYSEL 75

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR++ LK  +   G  + + VAGCVAQAEG EI RR+P+V++VVGPQTY++LPEL+    
Sbjct: 76  GRLKTLKEEKASTGKPMTITVAGCVAQAEGAEIQRRAPVVDLVVGPQTYHKLPELIANVH 135

Query: 145 FGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             +   +DT++ VE+KF+ L+  +   +   G TAF+T+QEGCDKFCTFCVVPYTRG E 
Sbjct: 136 RERGEALDTEFEVEEKFDALATPERHVD---GFTAFVTVQEGCDKFCTFCVVPYTRGAEW 192

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK----CTFSDLLYSLSEIKG 259
           SR + Q+V E R L   GV E+TLLGQNVNA+ G+   G+          L+  L++I G
Sbjct: 193 SRPVDQIVAEVRALAAKGVREVTLLGQNVNAFHGEAPKGDPEGGVWGLGRLVRHLAKIGG 252

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           + R+R+TTSHP+DM D LI+A  D   LMPY HLPVQ+GSD+ILKSMNR HTA EY  II
Sbjct: 253 IERIRFTTSHPKDMDDDLIQAFADEPKLMPYFHLPVQAGSDKILKSMNRSHTAAEYLDII 312

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            R+R+ RPDIAIS D IVGFPGET+ DF ATM+LV ++ YA  FSFKYS R GTPG+ M 
Sbjct: 313 ARLRAARPDIAISGDMIVGFPGETEADFEATMELVRQVNYASCFSFKYSKRPGTPGAAMF 372

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV 439
            Q+DE VK ERL  LQ  L EQQV+FN + +G+ + VL E+ G+ +G+L GRSP+LQ+V 
Sbjct: 373 NQIDETVKGERLARLQALLTEQQVAFNQSMIGKTLPVLFEREGRFEGQLSGRSPYLQAVH 432

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELVV 469
                  IG I  V IT    + L G L  
Sbjct: 433 CEGPVELIGQIANVEITGATKNALSGRLAT 462


>gi|209966243|ref|YP_002299158.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Rhodospirillum
           centenum SW]
 gi|229890626|sp|B6IVM2|MIAB_RHOCS RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|209959709|gb|ACJ00346.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Rhodospirillum centenum
           SW]
          Length = 466

 Score =  507 bits (1307), Expect = e-141,   Method: Composition-based stats.
 Identities = 248/449 (55%), Positives = 332/449 (73%), Gaps = 5/449 (1%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + ++ ++K+YGCQMNVYDS RM D+    GYE  ++ D AD+++LNTCHIREKAAEKVYS
Sbjct: 1   MKKKLYIKTYGCQMNVYDSGRMADVLAPLGYEPTDAPDGADMVILNTCHIREKAAEKVYS 60

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            LGR+R L+ +R   GG ++V V GCVAQAEG EI+ R+P V++V GPQTY++LPE++ R
Sbjct: 61  DLGRLRPLQAARAATGGRMIVAVGGCVAQAEGAEIMMRAPHVDMVFGPQTYHQLPEMVAR 120

Query: 143 ARFG-KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           A  G   VV+TD+ VE KF+ L           G +AFL++QEGCDKFCT+CVVPYTRG 
Sbjct: 121 AVRGTGGVVNTDFPVESKFDSLP---EEGASPAGPSAFLSVQEGCDKFCTYCVVPYTRGA 177

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR  ++V+ EA +L+ +GV EITLLGQNVNA+ G G DG       L+ +L+EI GL 
Sbjct: 178 EFSRPAARVLAEAARLVADGVAEITLLGQNVNAYHGDGPDGTTWGLGRLVRNLAEIDGLA 237

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+RYTTSHP DM   LI AH ++  LMP++HLPVQSG+DRIL++MNR+HTA +YR++++R
Sbjct: 238 RIRYTTSHPNDMDAELIAAHAEVPQLMPFVHLPVQSGNDRILQAMNRKHTADDYRRVVER 297

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE- 380
           +R+ RPD+A+SSDFIVGFPGETD +F  T+ LV +IGYAQA+SFKYS R GTP + M   
Sbjct: 298 MRAARPDLALSSDFIVGFPGETDQEFADTLRLVTEIGYAQAYSFKYSARPGTPAAAMDGR 357

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440
           QV E+VKAERL  LQ+ L  QQ +FN ACVG++  VL ++ GK+ G+L+GR PW+Q+V  
Sbjct: 358 QVPESVKAERLEALQQLLTAQQTAFNTACVGRVQPVLFDRRGKKPGQLLGRGPWMQAVHA 417

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELVV 469
            +    +G I++VRI D   ++L G +VV
Sbjct: 418 EAPERLLGRIVEVRIADAHANSLSGTVVV 446


>gi|154254048|ref|YP_001414872.1| RNA modification protein [Parvibaculum lavamentivorans DS-1]
 gi|229890586|sp|A7HZ82|MIAB_PARL1 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|154157998|gb|ABS65215.1| RNA modification enzyme, MiaB family [Parvibaculum lavamentivorans
           DS-1]
          Length = 467

 Score =  507 bits (1306), Expect = e-141,   Method: Composition-based stats.
 Identities = 261/458 (56%), Positives = 336/458 (73%), Gaps = 2/458 (0%)

Query: 12  HMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCH 71
                  +     ++ FVK+YGCQMNVYDS RM D+    GY  V++ +DAD+++LNTCH
Sbjct: 2   PEAGPEAEPGSPRKKIFVKTYGCQMNVYDSARMVDVMAPSGYTEVDAPEDADIVILNTCH 61

Query: 72  IREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ 131
           IREKAAEKVYS LGR+R LK  +   G +LL+ VAGCVAQAEGEE+ RR+P+V++V+GPQ
Sbjct: 62  IREKAAEKVYSELGRLRELKKEKSGRGEELLIGVAGCVAQAEGEEMRRRAPVVDLVLGPQ 121

Query: 132 TYYRLPELLER-ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190
           TY+RLPE + R A  G  +V+T++ V+DKF  L + +      RG TAFLTIQEGCDKFC
Sbjct: 122 TYHRLPEYVARLANGGPGIVETEFPVDDKFASLPMAEKRKTLARGATAFLTIQEGCDKFC 181

Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDL 250
           TFCVVPYTRG E SR +++++DEAR L+D GV EITLLGQNVNAW G+   G   T   L
Sbjct: 182 TFCVVPYTRGSEFSRPVARILDEARSLVDAGVREITLLGQNVNAWHGEDQAGRPATLGYL 241

Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
           + +L+EI+GL RLRYTTSHPRDM + LI AH D+  LMPYLHLPVQSGSDRIL +MNRRH
Sbjct: 242 IRALAEIEGLARLRYTTSHPRDMDEELIAAHRDVPALMPYLHLPVQSGSDRILAAMNRRH 301

Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370
            A  Y +II RIR+ +PDIA+SSDFIVGFPGET+ DF AT+DL+  +G+AQA+SFKYSPR
Sbjct: 302 DADSYHRIIGRIRAAKPDIALSSDFIVGFPGETEADFEATLDLIRTVGFAQAYSFKYSPR 361

Query: 371 LGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG 430
            GTP +   +QV E VK+ERL  LQ  L EQQ++FN  C G+ + VL ++ G+ + +LVG
Sbjct: 362 PGTPAATEEDQVPEEVKSERLQRLQALLGEQQLAFNAGCAGRTMPVLFDRRGRGESQLVG 421

Query: 431 RSPWLQSVVL-NSKNHNIGDIIKVRITDVKISTLYGEL 467
           RSP+LQSV + ++  H  G ++ V I +   ++L G L
Sbjct: 422 RSPYLQSVHIDDAPEHLFGSLVDVVIEEGHRNSLRGRL 459


>gi|13474614|ref|NP_106183.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Mesorhizobium
           loti MAFF303099]
 gi|81778168|sp|Q98BK3|MIAB_RHILO RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|14025368|dbj|BAB51969.1| mlr5534 [Mesorhizobium loti MAFF303099]
          Length = 450

 Score =  507 bits (1306), Expect = e-141,   Method: Composition-based stats.
 Identities = 275/448 (61%), Positives = 345/448 (77%)

Query: 20  QCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEK 79
           +    ++ F+K+YGCQMNVYDS RM D   + GY   +++D+ADL++LNTCHIREKAAEK
Sbjct: 2   RATAAKKVFIKTYGCQMNVYDSQRMGDALAADGYTATDAIDEADLVLLNTCHIREKAAEK 61

Query: 80  VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL 139
           VYS LGRIR++K  R   G +LL+ VAGCVAQAEG EI+RRSP V++V+GPQTY+RLP++
Sbjct: 62  VYSELGRIRDMKAERAIAGRELLIGVAGCVAQAEGAEIIRRSPAVDLVIGPQTYHRLPDV 121

Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           L R R G+++V+TDY++EDKF+ L         KRGVTAFLT+QEGCDKFCTFCVVPYTR
Sbjct: 122 LARVRGGEKIVETDYAIEDKFDHLPQPKRAEVIKRGVTAFLTVQEGCDKFCTFCVVPYTR 181

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G E+SR ++Q+V EA +L + GV E+TLLGQNVNAW G+G +GE+     LL+ L+EI G
Sbjct: 182 GSEVSRPVAQIVAEAERLAEAGVREVTLLGQNVNAWHGQGENGEEWGLGRLLFRLAEIPG 241

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           L RLRYTTSHPRDM D LI AH DL  LMPYLHLPVQSGSDRILK+MNRRHTA +Y  ++
Sbjct: 242 LARLRYTTSHPRDMDDELISAHRDLPSLMPYLHLPVQSGSDRILKAMNRRHTARDYLALL 301

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
           DRIR+ RPDIA+S DFIVGFPGET+ DF ATM+LV ++ YA AFSFKYSPR GTPG+ M 
Sbjct: 302 DRIRAARPDIALSGDFIVGFPGETEADFEATMELVRQVNYASAFSFKYSPRPGTPGAEMP 361

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV 439
           + V E +K ERL  LQ  L +QQ  F  + VG  I+ LIEK G++ G+ VGR+PWLQ V+
Sbjct: 362 DHVPETLKDERLQRLQALLLKQQQGFGSSLVGSTIDTLIEKPGRQAGQKVGRTPWLQPVI 421

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGEL 467
           ++ K   IGDII+VRIT    ++L+ EL
Sbjct: 422 VDEKAGEIGDIIQVRITKTGYNSLFAEL 449


>gi|319403640|emb|CBI77225.1| bifunctional enzyme [Bartonella rochalimae ATCC BAA-1498]
          Length = 460

 Score =  507 bits (1305), Expect = e-141,   Method: Composition-based stats.
 Identities = 262/443 (59%), Positives = 338/443 (76%), Gaps = 2/443 (0%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P++ F+K+YGCQMNVYDS RM D   +QGY    + +DADLI++NTCHIREKAAEK+YS 
Sbjct: 15  PKKVFIKTYGCQMNVYDSQRMNDSLSAQGYIATQTPNDADLILINTCHIREKAAEKLYSD 74

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR++ ++  R  +   L++ V GCVAQAEG EILRR+P V+ ++GPQ Y+RLPELL++ 
Sbjct: 75  LGRLQIIRQGRTHDKP-LMIGVTGCVAQAEGNEILRRAPTVDFIIGPQMYHRLPELLKQV 133

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           + GK+V++TDY+VEDKF  L   +    R+RG++AFLT+QEGCDKFCTFCVVPYTRG EI
Sbjct: 134 KQGKKVIETDYAVEDKFSHLPPHNKQAVRQRGISAFLTVQEGCDKFCTFCVVPYTRGAEI 193

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SRS+ Q+  EA +LI+ GV EITLLGQNVNAW G+ +DG+     DLL+ L++I GL RL
Sbjct: 194 SRSVKQITAEAYQLIEAGVKEITLLGQNVNAWHGQSIDGKTWRLGDLLHHLAKIDGLKRL 253

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           RYTTSHPRDM D LI AH DLD+LMPYLHLPVQSGSDRILK+MNR+H +  Y  +ID+IR
Sbjct: 254 RYTTSHPRDMDDSLIAAHRDLDILMPYLHLPVQSGSDRILKAMNRQHKSIHYLNLIDKIR 313

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           + RPDIA S DFIVGFPGETD+DF  T+ L+ ++GY+ A+SFKYSPR GT G+ M   VD
Sbjct: 314 AARPDIAFSGDFIVGFPGETDEDFEETIKLIQQVGYSSAYSFKYSPRPGTVGATMKNHVD 373

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
           E VK  RL  LQ  L +QQ +F  + +GQ  +VLIEK G+  G+++GRSPWL  VV+N+ 
Sbjct: 374 ETVKNARLQHLQAILLDQQHTFLHSKIGQTTDVLIEKIGRHSGQMIGRSPWLLPVVVNT- 432

Query: 444 NHNIGDIIKVRITDVKISTLYGE 466
             +IG I+K+RIT+   ++  GE
Sbjct: 433 QASIGTIMKIRITNASSNSFIGE 455


>gi|240139952|ref|YP_002964429.1| tRNA modification enzyme MiaB, putative isopentenyl-adenosine A37
           tRNA methylthiolase [Methylobacterium extorquens AM1]
 gi|240009926|gb|ACS41152.1| tRNA modification enzyme MiaB, putative isopentenyl-adenosine A37
           tRNA methylthiolase [Methylobacterium extorquens AM1]
          Length = 446

 Score =  506 bits (1303), Expect = e-141,   Method: Composition-based stats.
 Identities = 257/442 (58%), Positives = 329/442 (74%), Gaps = 6/442 (1%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ +VKSYGCQMN YD+ RM D+  ++GY   +++++AD++VLNTCHIREKAAEKVYS L
Sbjct: 2   KKAYVKSYGCQMNAYDAGRMADVLAAEGYSATDTVEEADVVVLNTCHIREKAAEKVYSEL 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR+R LK  R + G D  +VVAGCVAQAEG EIL R+P V+VVVGPQ+Y+RLP+LL ++R
Sbjct: 62  GRLRVLKGERAESGHDTRIVVAGCVAQAEGREILSRAPAVDVVVGPQSYHRLPDLLRQSR 121

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
              RVVDT++  EDKF+ L        R RGVT FLT+QEGCDKFC FCVVPYTRG E+S
Sbjct: 122 E-TRVVDTEFPAEDKFDHLP-----ARRNRGVTGFLTVQEGCDKFCAFCVVPYTRGAEVS 175

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           RS++ VVDEAR+L++ GV EITL+GQNVNA+ G G DG   T   L+ +LS + GL+RLR
Sbjct: 176 RSVAAVVDEARRLVEGGVREITLIGQNVNAYHGDGPDGAPATLGHLMDALSAVPGLLRLR 235

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           YTTSHP D +D LI AH    ++MPYLHLPVQSGSD IL +MNRRHT   YR++I+RIR+
Sbjct: 236 YTTSHPNDFADDLIAAHATNPLVMPYLHLPVQSGSDGILHAMNRRHTGDAYRRLIERIRN 295

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
            RPDIA+SSDFIVGFPGETD DF  TM LV  IG++ AFSFKYSPR GTP +   + V E
Sbjct: 296 ARPDIALSSDFIVGFPGETDADFAETMRLVSDIGFSAAFSFKYSPRAGTPAAEREDAVPE 355

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
            VK ERL  LQ  L  Q+ ++N A VG + E+L+EK G+  G++ G++P LQ+V  ++  
Sbjct: 356 AVKTERLAALQDLLDRQRHAYNAASVGTLTEILVEKTGRHPGQVAGKTPHLQAVQFDAPA 415

Query: 445 HNIGDIIKVRITDVKISTLYGE 466
             IG ++ VRIT    ++L+GE
Sbjct: 416 STIGTVVPVRITRAGSNSLFGE 437


>gi|49473881|ref|YP_031923.1| hypothetical protein BQ02140 [Bartonella quintana str. Toulouse]
 gi|81647252|sp|Q6G0N1|MIAB_BARQU RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|49239384|emb|CAF25717.1| hypothetical protein BQ02140 [Bartonella quintana str. Toulouse]
          Length = 458

 Score =  506 bits (1302), Expect = e-141,   Method: Composition-based stats.
 Identities = 261/449 (58%), Positives = 338/449 (75%), Gaps = 2/449 (0%)

Query: 19  DQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAE 78
              +VP++ F+K+YGCQMNVYDS RM D   S+GY    + +DADLI+LNTCHIREKAAE
Sbjct: 9   TPSVVPKKVFIKTYGCQMNVYDSQRMTDSLSSKGYVATQTPNDADLILLNTCHIREKAAE 68

Query: 79  KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPE 138
           K+YS LGR+R ++ +R  +   L++ V GCVAQAEG EILRR+P+V++V+GPQ Y+RLP+
Sbjct: 69  KLYSDLGRLRVMRQARTLDKP-LMIGVTGCVAQAEGNEILRRAPMVDLVIGPQMYHRLPD 127

Query: 139 LLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
           LLE+ + GK++V+TDY VEDKF  L   +    RKRGV+AFLT+QEGCDKFCTFCVVPYT
Sbjct: 128 LLEQTKQGKKIVETDYPVEDKFAHLPPHNKRAVRKRGVSAFLTVQEGCDKFCTFCVVPYT 187

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258
           RG EISRS+ Q+ +EAR+LI+ GV EITLLGQNVN W G+  +G+     DLLY L+++ 
Sbjct: 188 RGAEISRSVEQITEEARQLIEAGVKEITLLGQNVNGWHGQIANGKTWRLGDLLYHLAKLD 247

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           GL RLRYTTSHPRDM D LI AH DLD+LMPYLHLPVQSGSDRILK+MNR+H +  Y  +
Sbjct: 248 GLKRLRYTTSHPRDMDDSLIAAHRDLDILMPYLHLPVQSGSDRILKAMNRQHKSIHYLHL 307

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           I++IR+ RPDIA S DFIVGFPGETD+DF  T+ L+ ++ Y+ A+SFKYSPR GT G+ M
Sbjct: 308 IEKIRTARPDIAFSGDFIVGFPGETDEDFEETVKLIKQVQYSSAYSFKYSPRPGTVGATM 367

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSV 438
              VDE VK  RL  LQ  L EQQ +F  + +GQ  +VLIEK G+  G++VGRSPWL  V
Sbjct: 368 KNHVDEAVKDARLQHLQVLLLEQQNAFLRSKIGQTTDVLIEKVGRHSGQMVGRSPWLLPV 427

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGEL 467
           V+++   + G ++ + I +   ++  GE+
Sbjct: 428 VVDT-EASTGTVMSIHIKNAGSNSFVGEI 455


>gi|170741367|ref|YP_001770022.1| (dimethylallyl)adenosine tRNA methylthiotransferase
           [Methylobacterium sp. 4-46]
 gi|229890618|sp|B0UNY0|MIAB_METS4 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|168195641|gb|ACA17588.1| RNA modification enzyme, MiaB family [Methylobacterium sp. 4-46]
          Length = 447

 Score =  505 bits (1301), Expect = e-141,   Method: Composition-based stats.
 Identities = 253/442 (57%), Positives = 328/442 (74%), Gaps = 6/442 (1%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ FVKSYGCQMNVYD+ RM D+   +G+    +M++AD+++LNTCHIREKAAEKVYS L
Sbjct: 2   KKAFVKSYGCQMNVYDAARMVDLLGREGFAETEAMEEADVVILNTCHIREKAAEKVYSEL 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR+R+LK  R   G +  +VVAGCVAQAEG EI+ R+P V+VVVGPQ+Y+RLPELL RAR
Sbjct: 62  GRVRDLKGERAGAGRETTIVVAGCVAQAEGREIIHRAPAVDVVVGPQSYHRLPELLARAR 121

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            GK VVDT++ ++DKF+ L        R  G +AFLT+QEGCDKFC FCVVPYTRG E+S
Sbjct: 122 DGK-VVDTEFPLDDKFDHLPP-----RRVAGPSAFLTVQEGCDKFCAFCVVPYTRGAEVS 175

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R +++++ EA +L   G  E+TL+GQNVNA+ G+G DG   +   L+  L+E+ G+ RLR
Sbjct: 176 RPVAKILAEAERLAAGGARELTLIGQNVNAFHGEGPDGRPWSLGRLMRRLAEVPGIARLR 235

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           YTTSHPRDM D LI AH D   +MPYLHLPVQSGSDRIL +MNRRH A  YR++IDRIR+
Sbjct: 236 YTTSHPRDMDDDLIAAHRDCPAVMPYLHLPVQSGSDRILAAMNRRHDADTYRRLIDRIRA 295

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
            RPDIA++SDFIVGFPGETD D   TM LV +IG++ AFSFKYSPR GTP +   + V E
Sbjct: 296 ARPDIALTSDFIVGFPGETDADHAETMRLVAEIGFSGAFSFKYSPRPGTPAAESADAVPE 355

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
            VK ERL  LQ  +  Q  +FN A +G+ +EVLIEK G+  G++ G+SP+LQ+V + ++ 
Sbjct: 356 AVKRERLAALQALIDGQARAFNLASLGRTVEVLIEKPGRHPGQVAGKSPYLQAVQIEAEP 415

Query: 445 HNIGDIIKVRITDVKISTLYGE 466
             IG I+ VR+T    ++L+GE
Sbjct: 416 AVIGTILPVRLTRAGSNSLFGE 437


>gi|163852619|ref|YP_001640662.1| RNA modification protein [Methylobacterium extorquens PA1]
 gi|229890613|sp|A9VYZ9|MIAB_METEP RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|163664224|gb|ABY31591.1| RNA modification enzyme, MiaB family [Methylobacterium extorquens
           PA1]
          Length = 446

 Score =  505 bits (1301), Expect = e-141,   Method: Composition-based stats.
 Identities = 258/442 (58%), Positives = 330/442 (74%), Gaps = 6/442 (1%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ +VKSYGCQMN YD+ RM D+  ++GY   +++++AD++VLNTCHIREKAAEKVYS L
Sbjct: 2   KKAYVKSYGCQMNAYDAGRMADVLAAEGYSATDTVEEADVVVLNTCHIREKAAEKVYSEL 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR+R LK  R + G D  +VVAGCVAQAEG EIL R+P V+VVVGPQ+Y+RLP+LL ++R
Sbjct: 62  GRLRVLKGERAESGHDTRIVVAGCVAQAEGREILSRAPAVDVVVGPQSYHRLPDLLRQSR 121

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
              RVVDT++  EDKF+ L        R RGVT FLT+QEGCDKFC FCVVPYTRG E+S
Sbjct: 122 E-TRVVDTEFPAEDKFDHLP-----ARRNRGVTGFLTVQEGCDKFCAFCVVPYTRGAEVS 175

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           RS++ VVDEAR+L++ GV EITL+GQNVNA+ G G DG   T   L+ +LS + GL+RLR
Sbjct: 176 RSVAAVVDEARRLVEGGVREITLIGQNVNAYHGNGPDGAPATLGHLMDALSAVPGLLRLR 235

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           YTTSHP D +D LI AH    ++MPYLHLPVQSGSDRIL +MNRRHT   YR++I+RIR+
Sbjct: 236 YTTSHPNDFADDLIAAHATNPLVMPYLHLPVQSGSDRILHAMNRRHTGDAYRRLIERIRN 295

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
            RPDIA+SSDFIVGFPGETD DF  TM LV  IG++ AFSFKYSPR GTP +   + V E
Sbjct: 296 ARPDIALSSDFIVGFPGETDADFAETMRLVSDIGFSAAFSFKYSPRAGTPAAEREDAVPE 355

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
            VK ERL  LQ  L  Q+ ++N A VG + E+L+EK G+  G++ G++P LQ+V  ++  
Sbjct: 356 AVKTERLAALQDLLDRQRHAYNAASVGTLTEILVEKTGRHPGQVAGKTPHLQAVQFDAPA 415

Query: 445 HNIGDIIKVRITDVKISTLYGE 466
             IG ++ VRIT    ++L+GE
Sbjct: 416 STIGTVVPVRITRAGSNSLFGE 437


>gi|86747716|ref|YP_484212.1| tRNA-i(6)A37 modification enzyme MiaB [Rhodopseudomonas palustris
           HaA2]
 gi|123408933|sp|Q2J2K9|MIAB_RHOP2 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|86570744|gb|ABD05301.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Rhodopseudomonas
           palustris HaA2]
          Length = 468

 Score =  504 bits (1299), Expect = e-141,   Method: Composition-based stats.
 Identities = 242/453 (53%), Positives = 328/453 (72%), Gaps = 5/453 (1%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
             P++  +KSYGCQMNVYD+ RM D+   +G+    S+DDADL++LNTCHIREKA+EKV+
Sbjct: 2   APPRKLHIKSYGCQMNVYDAQRMVDVLAPEGFVETASVDDADLVILNTCHIREKASEKVF 61

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S LGR+R  ++   ++G  + +VVAGCVAQAEG+EI+RR P V+VVVGPQ+Y+ LP LL 
Sbjct: 62  SELGRLRLARDEASRDGRRMQIVVAGCVAQAEGDEIVRRQPAVDVVVGPQSYHHLPRLLA 121

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           +A    R ++T++ + DKF  L        R RG++AF+T+QEGCDKFCTFCVVPYTRG 
Sbjct: 122 QAAQTGRALETEFPIADKFGFLPQPQPEAIRARGISAFVTVQEGCDKFCTFCVVPYTRGA 181

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E+SR ++ ++ +  +L D+GV E+TL+GQNVNA+ G G DG   T   LL  L+ + G+V
Sbjct: 182 EVSRPVAAILADVERLADHGVRELTLIGQNVNAYHGDGPDGRPWTLGRLLQRLAAVPGIV 241

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           RLRY+TSHP D+ D LI AH DLD LMP++HLPVQSGSDRIL +MNR+HTA +YR++IDR
Sbjct: 242 RLRYSTSHPNDVDDDLIAAHRDLDALMPFVHLPVQSGSDRILAAMNRKHTAADYRRVIDR 301

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
            R+VRP+IA SSDFIVGFPGETD DF AT+ LV +IGYA A+SFKYSPR GTP + M E 
Sbjct: 302 FRAVRPEIAFSSDFIVGFPGETDADFEATLALVTQIGYAGAYSFKYSPRPGTPAAEMPEM 361

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           V   V  ERL  LQ+ +  QQ +FN A +G+ ++VL E+ G++ G++VGR+ +LQ   + 
Sbjct: 362 VPAAVMDERLERLQQVIDAQQSAFNRAAIGRTVDVLFERAGRKPGQIVGRTAYLQPAHVF 421

Query: 442 -----SKNHNIGDIIKVRITDVKISTLYGELVV 469
                + +  +G I+ VR+  ++  +L GEL  
Sbjct: 422 PPAGMAPDSLVGQILPVRVDSLERYSLLGELAA 454


>gi|149914119|ref|ZP_01902650.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Roseobacter sp. AzwK-3b]
 gi|149811638|gb|EDM71471.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Roseobacter sp. AzwK-3b]
          Length = 446

 Score =  504 bits (1299), Expect = e-140,   Method: Composition-based stats.
 Identities = 248/445 (55%), Positives = 325/445 (73%), Gaps = 7/445 (1%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ ++K+YGCQMNVYDS RM +   S GY   ++ DDAD+I+LNTCHIREKAAEKVYS L
Sbjct: 5   KKLYIKTYGCQMNVYDSERMAEAMGSAGYVETDTPDDADMILLNTCHIREKAAEKVYSEL 64

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR R LK++R     DL + VAGCVAQAEG+EI+RR P+V++VVGPQ+Y+RLP+L  + R
Sbjct: 65  GRFRPLKDAR----PDLKIGVAGCVAQAEGDEIMRRQPLVDLVVGPQSYHRLPQLEAQTR 120

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G R +DTD+ ++DKFE L     G    RG TAFLT+QEGCDKFC FCVVPYTRG E S
Sbjct: 121 TGARALDTDFPLDDKFEALKT--RGPKASRGPTAFLTVQEGCDKFCAFCVVPYTRGAEAS 178

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R  ++++DEAR+L+D GV EITLLGQNVNA+ G G DG   + + L+++L  I GL R+R
Sbjct: 179 RPAARILDEARELVDRGVREITLLGQNVNAYHGTGPDGSDWSLARLIWALDAIDGLERIR 238

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +TTSHP DM+D LI+AH     LMPYLHLPVQSGSDRILK MNR+HTA  Y ++I+RIR+
Sbjct: 239 FTTSHPNDMADDLIEAHASCAKLMPYLHLPVQSGSDRILKRMNRKHTAESYLRLIERIRA 298

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
            RPDI +S DFIVGFP ET+ DF+ATMDL++++ Y  A+SFKYS R GTP +    Q+DE
Sbjct: 299 ARPDILMSGDFIVGFPEETEADFQATMDLIEEVKYGYAYSFKYSTRPGTPAAERA-QLDE 357

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
           +VK +RL  LQ ++   Q +  DA VG+ + VL EK G+  G++VG+S +L +V +    
Sbjct: 358 DVKTDRLHRLQARITHHQRAIQDAMVGRTVGVLFEKPGRLPGQMVGKSDYLHAVHVADCP 417

Query: 445 HNIGDIIKVRITDVKISTLYGELVV 469
              GD+ +V IT+   ++L G LV 
Sbjct: 418 LQPGDLARVEITESGSNSLAGRLVA 442


>gi|114770160|ref|ZP_01447698.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [alpha proteobacterium
           HTCC2255]
 gi|114548997|gb|EAU51880.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [alpha proteobacterium
           HTCC2255]
          Length = 442

 Score =  504 bits (1297), Expect = e-140,   Method: Composition-based stats.
 Identities = 237/444 (53%), Positives = 314/444 (70%), Gaps = 8/444 (1%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +  ++K++GCQMNVYDS RM     + GY  V+S ++AD+I+LNTCHIREKAAEK+YS L
Sbjct: 5   KNLYIKTFGCQMNVYDSERMATSLGADGYNEVSSPEEADMILLNTCHIREKAAEKIYSDL 64

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR ++LK        DL + V GCVAQAEGEEI++R P+V++VVGPQ Y+RLP + +   
Sbjct: 65  GRFKSLKAK----NPDLKIGVTGCVAQAEGEEIIKRQPLVDIVVGPQAYHRLPAMAKSIE 120

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            GK+VVDTD+  EDKFE L         KR  +AFLT+QEGCDKFC FCVVP+TRG E+S
Sbjct: 121 NGKKVVDTDFPEEDKFEHLPAAP---KTKRAPSAFLTVQEGCDKFCAFCVVPFTRGAEVS 177

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R + Q+++EAR L++ GV +ITLLGQNVNA+ G    G+      L+  LS+I+ L R+R
Sbjct: 178 RPVLQIINEARDLVERGVRDITLLGQNVNAYHGAMKSGD-ANLPQLIKELSKIEELKRIR 236

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +TTSHP DM+  LI AHG+++ LMPYLHLPVQSGSD+ILK MNR+HTA  Y ++I+ +R 
Sbjct: 237 FTTSHPNDMTQELIDAHGEMEKLMPYLHLPVQSGSDKILKGMNRKHTAKSYLEVIENLRV 296

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
            RPDIA+S DFIVGFPGETD+DF  T++LV ++ YAQA+SFKYS R GTP +    QV E
Sbjct: 297 ARPDIALSGDFIVGFPGETDEDFEQTLELVREVKYAQAYSFKYSTRPGTPAAENKNQVPE 356

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
            +K+ERL  LQ  L + Q  F    VG+++ VL+E+ G+  G+LVGRS +L  V  +   
Sbjct: 357 EIKSERLSRLQALLSQHQKEFMGTMVGKVLPVLLERPGRLDGQLVGRSEYLHGVHASIDQ 416

Query: 445 HNIGDIIKVRITDVKISTLYGELV 468
             IGDI+ +RI     ++L  E V
Sbjct: 417 AQIGDIVNLRILGADTNSLRAEFV 440


>gi|309972847|gb|ADO96048.1| 2-methylthioadenine synthetase (MiaB) [Haemophilus influenzae
           R2846]
          Length = 474

 Score =  504 bits (1297), Expect = e-140,   Method: Composition-based stats.
 Identities = 209/449 (46%), Positives = 297/449 (66%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + Q+  +K++GCQMN YDS +M D+  S  G E   + ++AD+++LNTC IREKA EKV+
Sbjct: 1   MTQKLHIKTWGCQMNEYDSSKMADLLLSTHGLELTEAPEEADVLLLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR + LK    K   +L++ V GCVA  EGE I  R+P V+++ GPQT +RLPE++ 
Sbjct: 61  HQLGRWKELK----KNNPNLVIGVGGCVASQEGEHIRHRAPYVDIIFGPQTLHRLPEMIN 116

Query: 142 RARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           + R GK  VVD  +   +KF+RL        R  G TAF++I EGC+K+CTFCVVPYTRG
Sbjct: 117 QIRGGKSSVVDVSFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTFCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR +  V+ E  +L D GV E+ LLGQNVNA+RG   DG+ C+F++LL  ++ I G+
Sbjct: 172 EEVSRPVDDVLFEIAQLADQGVREVNLLGQNVNAYRGPTHDGQICSFAELLRLVASIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            RLR+TTSHP + ++ +I  + D   L+ +LHLPVQ+GSDR+L  M R HTA EY+ II 
Sbjct: 232 DRLRFTTSHPIEFTNDIIDVYRDTPELVSFLHLPVQAGSDRVLTMMKRGHTALEYKSIIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R+VRPDI ISSDFIVGFPGET +DF  TM+L+ ++ +  +FSF YS R GTP ++M +
Sbjct: 292 KLRAVRPDIQISSDFIVGFPGETAEDFEQTMNLIAQVNFDMSFSFVYSARPGTPAADMPD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439
            V E+ K +RL  LQ+++ +Q   F+   +G    VL+E   K+   +L GR+   + V 
Sbjct: 352 DVTEDEKKQRLYVLQERINQQAAQFSRRMLGTEQRVLVEGPSKKDIMELTGRTETNRIVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG  + V+ITDV  ++L GE+V
Sbjct: 412 FQGSPEMIGKFVDVKITDVYTNSLRGEVV 440


>gi|114326782|ref|YP_743939.1| tRNA 2-methylthioadenosine synthase [Granulibacter bethesdensis
           CGDNIH1]
 gi|122328233|sp|Q0BVY6|MIAB_GRABC RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|114314956|gb|ABI61016.1| tRNA 2-methylthioadenosine synthase [Granulibacter bethesdensis
           CGDNIH1]
          Length = 493

 Score =  504 bits (1297), Expect = e-140,   Method: Composition-based stats.
 Identities = 250/446 (56%), Positives = 323/446 (72%), Gaps = 3/446 (0%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +R  V ++GCQMNVYDS RM D+    GY      + AD+IVLNTCHIR+KA EKV+S L
Sbjct: 35  KRLHVITWGCQMNVYDSARMTDVLSPLGYTAHAEPEGADMIVLNTCHIRDKATEKVFSEL 94

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR+R LK +R +EG  +L+ VAGCVAQAEGE+IL R+P V++V+GPQTY+RL  ++ RA 
Sbjct: 95  GRLRLLKEARAREGQPMLLAVAGCVAQAEGEQILARAPYVDIVLGPQTYHRLGGMVRRAM 154

Query: 145 FGKRVVDTDYSVEDKFERLS---IVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
            G+RV++TD+  EDKF+ L        G     G TAFLTIQEGCDKFC+FCVVPYTRG 
Sbjct: 155 NGERVIETDFPPEDKFDYLPEAAAPQHGPGLAGGRTAFLTIQEGCDKFCSFCVVPYTRGA 214

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E+SR  S V+ EAR+++  G  EITLLGQNVNA+ G G DGE  T + L+ +L++I  L+
Sbjct: 215 EVSRPASSVLAEARRMVRGGAREITLLGQNVNAYHGLGEDGEVWTLARLIRALADIPDLL 274

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+RYTTSHPRD+SD LI AH D+  LMP+LHLPVQSGSDRIL +MNRRHTA +Y +++DR
Sbjct: 275 RIRYTTSHPRDVSDDLIAAHRDIPQLMPFLHLPVQSGSDRILAAMNRRHTAEDYFRVVDR 334

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R  RPD+A+SSDFIVG PGETD+DF  TM L++++G+AQA+SFKYSPR GTP +     
Sbjct: 335 LREARPDLALSSDFIVGHPGETDEDFEDTMRLIERVGFAQAYSFKYSPRPGTPAAERDNH 394

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           V E V  ERL  LQ  LR QQ +FN AC+G+ + VL+   G+  G++ GRSPWLQ+V L+
Sbjct: 395 VPEPVMDERLQRLQALLRTQQEAFNTACIGKTVNVLLVTPGRHPGQIGGRSPWLQAVHLD 454

Query: 442 SKNHNIGDIIKVRITDVKISTLYGEL 467
           +    IG  + V IT    ++L   L
Sbjct: 455 APATLIGQEVPVTITAAHTNSLSATL 480


>gi|251793083|ref|YP_003007809.1| (dimethylallyl)adenosine tRNA methylthiotransferase
           [Aggregatibacter aphrophilus NJ8700]
 gi|247534476|gb|ACS97722.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Aggregatibacter
           aphrophilus NJ8700]
          Length = 474

 Score =  504 bits (1297), Expect = e-140,   Method: Composition-based stats.
 Identities = 210/449 (46%), Positives = 296/449 (65%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + Q+  +K++GCQMN YDS +M D+  S  G E  +  ++AD+++LNTC IREKA EKV+
Sbjct: 1   MTQKLHIKTWGCQMNEYDSSKMADLLHSTHGLELTDVPEEADVLLLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR + LK    K    LL+ V GCVA  EGE I  R+P V++V GPQT +RLPE++ 
Sbjct: 61  HQLGRWKELK----KSNPKLLIGVGGCVASQEGEHIRTRAPYVDIVFGPQTLHRLPEMIN 116

Query: 142 RARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           + R GK  VVD  +   +KF+RL        R  G TAF++I EGC+K+CT+CVVPYTRG
Sbjct: 117 QIRGGKSSVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTYCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR +  ++ E  +L + GV E+ LLGQNVNA+RG   DGE CTF++LL  ++ I G+
Sbjct: 172 EEVSRPVDDILFEIAQLAEQGVREVNLLGQNVNAYRGPTFDGEICTFAELLRLVAAIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            RLR+TTSHP + +D +I  + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II 
Sbjct: 232 DRLRFTTSHPIEFTDDIIDVYRDTPELVSFLHLPVQSGSDRILTMMKRGHTAIEYKSIIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++++VRP+I ISSDFIVGFPGET++DF  TM+L+ ++ +  +FSF YS R GTP ++  +
Sbjct: 292 KLKAVRPNIQISSDFIVGFPGETEEDFEQTMNLIAQVNFDMSFSFIYSARPGTPAADYPD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439
            V E+ K +RL  LQ+++  Q   F+ A +G    VL+E   K+   +L GR+   + V 
Sbjct: 352 DVTEDEKKQRLYLLQQRINNQAAQFSRAMLGTEQRVLVEGPSKKDIMELTGRTENNRIVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG  + ++ITDV  ++L GE+V
Sbjct: 412 FQGSPDMIGKFVDIKITDVFTNSLRGEVV 440


>gi|319406556|emb|CBI80198.1| bifunctional enzyme [Bartonella sp. 1-1C]
          Length = 460

 Score =  503 bits (1295), Expect = e-140,   Method: Composition-based stats.
 Identities = 260/443 (58%), Positives = 337/443 (76%), Gaps = 2/443 (0%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P++ F+K+YGCQMNVYDS RM D   +QGY    + +DADLI++NTCHIREKAAEK+YS 
Sbjct: 15  PKKVFIKTYGCQMNVYDSQRMNDSLSAQGYIATQTPNDADLILINTCHIREKAAEKLYSD 74

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR++ ++  R  +   L++ V GCVAQAEG EILRR+P V+ ++GPQ Y+RLPELL++ 
Sbjct: 75  LGRLQIIRQGRTHDKP-LMIGVTGCVAQAEGNEILRRAPTVDFIIGPQMYHRLPELLKQV 133

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           + GK+VV+TDY+VEDKF  L   +    R+RG++AFLT+QEGCDKFCTFCVVPYTRG EI
Sbjct: 134 KQGKKVVETDYAVEDKFSHLPPHNKQAVRQRGISAFLTVQEGCDKFCTFCVVPYTRGAEI 193

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SRS+ Q+  EA +LI+ GV EITLLGQNVNAW G+ +DG+     DLL+ L++I GL RL
Sbjct: 194 SRSVKQITAEAHQLIEAGVKEITLLGQNVNAWHGQSIDGKTWRLGDLLHHLAKIDGLKRL 253

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           RYTT+HPRDM D LI AH DLD+LMPYLHLPVQSGSDRILK+MNR+H +  Y  +ID+IR
Sbjct: 254 RYTTNHPRDMDDSLIAAHRDLDILMPYLHLPVQSGSDRILKAMNRQHKSIHYLNLIDKIR 313

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           + +PDIA S DFIVGFPGETD+DF  T+ L+ ++GY+ A+SFKYSPR GT G+ M   VD
Sbjct: 314 AAKPDIAFSGDFIVGFPGETDEDFEETIKLIKQVGYSSAYSFKYSPRPGTVGATMKNHVD 373

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
           E VK  RL  LQ  L +QQ +F  + +GQ  ++LIEK G+  G+++GRSPWL  VV+N+ 
Sbjct: 374 ETVKNTRLQHLQAILLDQQHTFLHSKIGQTTDILIEKIGRHSGQMIGRSPWLLPVVINT- 432

Query: 444 NHNIGDIIKVRITDVKISTLYGE 466
              IG I+K+RIT+   ++  GE
Sbjct: 433 QAPIGTIMKIRITNASSNSFIGE 455


>gi|68248570|ref|YP_247682.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Haemophilus
           influenzae 86-028NP]
 gi|148825700|ref|YP_001290453.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Haemophilus
           influenzae PittEE]
 gi|229846938|ref|ZP_04467044.1| lipoyl synthase [Haemophilus influenzae 7P49H1]
 gi|81337003|sp|Q4QPM5|MIAB_HAEI8 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|229890550|sp|A5UBB9|MIAB_HAEIE RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|68056769|gb|AAX87022.1| conserved hypothetical protein [Haemophilus influenzae 86-028NP]
 gi|148715860|gb|ABQ98070.1| lipoyl synthase [Haemophilus influenzae PittEE]
 gi|229810022|gb|EEP45742.1| lipoyl synthase [Haemophilus influenzae 7P49H1]
          Length = 474

 Score =  503 bits (1295), Expect = e-140,   Method: Composition-based stats.
 Identities = 208/449 (46%), Positives = 297/449 (66%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + Q+  +K++GCQMN YDS +M D+  S  G E   + ++AD+++LNTC IREKA EKV+
Sbjct: 1   MTQKLHIKTWGCQMNEYDSSKMADLLLSTHGLELTEAPEEADVLLLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR + LK    K   +L++ V GCVA  EGE I  R+P V+++ GPQT +RLPE++ 
Sbjct: 61  HQLGRWKELK----KNNPNLVIGVGGCVASQEGEHIRHRAPYVDIIFGPQTLHRLPEMIN 116

Query: 142 RARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           + R GK  VVD  +   +KF+RL        R  G TAF++I EGC+K+CTFCVVPYTRG
Sbjct: 117 QIRGGKSSVVDVSFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTFCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR +  V+ E  +L + GV E+ LLGQNVNA+RG   DG+ C+F++LL  ++ I G+
Sbjct: 172 EEVSRPVDDVLFEIAQLAEQGVREVNLLGQNVNAYRGPTHDGQICSFAELLRLVASIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            RLR+TTSHP + ++ +I  + D   L+ +LHLPVQ+GSDR+L  M R HTA EY+ II 
Sbjct: 232 DRLRFTTSHPIEFTNDIIDVYRDTPELVSFLHLPVQAGSDRVLTMMKRGHTALEYKSIIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R+VRPDI ISSDFIVGFPGET +DF  TM+L+ ++ +  +FSF YS R GTP ++M +
Sbjct: 292 KLRAVRPDIQISSDFIVGFPGETAEDFEQTMNLIAQVNFDMSFSFVYSARPGTPAADMPD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439
            V E+ K +RL  LQ+++ +Q   F+   +G    VL+E   K+   +L GR+   + V 
Sbjct: 352 DVTEDEKKQRLYVLQERINQQAAQFSRRMLGTEQRVLVEGPSKKDIMELTGRTETNRIVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG  + V+ITDV  ++L GE+V
Sbjct: 412 FQGSPEMIGKFVDVKITDVYTNSLRGEVV 440


>gi|325578752|ref|ZP_08148799.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Haemophilus
           parainfluenzae ATCC 33392]
 gi|325159576|gb|EGC71708.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Haemophilus
           parainfluenzae ATCC 33392]
          Length = 474

 Score =  503 bits (1295), Expect = e-140,   Method: Composition-based stats.
 Identities = 207/449 (46%), Positives = 296/449 (65%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + Q+  +K++GCQMN YDS +M D+  +  G E  +  ++AD+++LNTC IREKA EKV+
Sbjct: 1   MTQKLHIKTWGCQMNEYDSSKMADLLLNTHGLELTDIPEEADVLLLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR + LK    K+  +L++ V GCVA  EGE I  R+P V++V GPQT +RLPE++ 
Sbjct: 61  HQLGRWKELK----KQNPNLVIGVGGCVASQEGEHIRHRAPYVDIVFGPQTLHRLPEMIN 116

Query: 142 RARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           + R GK  VVD  +   +KF+RL        R  G TAF++I EGC+K+CT+CVVPYTRG
Sbjct: 117 QIRGGKSSVVDVSFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTYCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR +  V+ E  +L D GV EI LLGQNVNA+RG   DG  CTF++LL  ++ I G+
Sbjct: 172 EEVSRPVDDVLFEIAQLADQGVREINLLGQNVNAYRGPTFDGGICTFAELLRLVASIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            RLR+TTSHP + +D +I  + D   L+ ++HLPVQ+GSDRIL  M R HTA EY+ II 
Sbjct: 232 DRLRFTTSHPIEFTDDIIDVYRDTPELVDFVHLPVQAGSDRILTMMKRGHTALEYKSIIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R+VRP+I ISSDFIVGFPGET ++F  TM+L+ ++ +  +FSF YS R GTP ++M +
Sbjct: 292 KLRAVRPNIQISSDFIVGFPGETKEEFEQTMNLIAQVNFDMSFSFIYSARPGTPAADMPD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439
            V E  K +RL  LQ+++ +Q   ++   +G    VL+E   K+   +L GR+   + V 
Sbjct: 352 DVSEEEKKQRLYLLQERINQQAAQYSRRMLGTEQRVLVEGPSKKDIMELTGRTENNRIVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG  + ++ITDV  ++L GE+V
Sbjct: 412 FQGSPDMIGKFVDIKITDVYTNSLRGEVV 440


>gi|323138528|ref|ZP_08073596.1| RNA modification enzyme, MiaB family [Methylocystis sp. ATCC 49242]
 gi|322396162|gb|EFX98695.1| RNA modification enzyme, MiaB family [Methylocystis sp. ATCC 49242]
          Length = 482

 Score =  502 bits (1294), Expect = e-140,   Method: Composition-based stats.
 Identities = 252/459 (54%), Positives = 332/459 (72%)

Query: 10  VAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNT 69
           V++ V  I D      +  VKSYGCQMNVYD+ RM D+   +GY    + +DADL++LNT
Sbjct: 18  VSNAVETIEDVTAKGGKVLVKSYGCQMNVYDATRMADLLGREGYAETANEEDADLVILNT 77

Query: 70  CHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG 129
           CHIREKAAEK+YS LG++   K  R  +G ++ +VVAGCVAQAEGEE+L+R   V++VVG
Sbjct: 78  CHIREKAAEKIYSELGKLALTKRERDAQGREMKIVVAGCVAQAEGEEVLKRQRAVDLVVG 137

Query: 130 PQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKF 189
           PQ+Y+RLP+LL +A+ G+RV DT+++VEDKF  L        R RGV+AF+T+QEGCDKF
Sbjct: 138 PQSYHRLPDLLRQAKDGRRVTDTEFAVEDKFHALPDPSRAQIRARGVSAFVTVQEGCDKF 197

Query: 190 CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSD 249
           C+FCVVPYTRG E+SR ++ +V E R+LID GV EITL+GQNVNA+RG    G +   + 
Sbjct: 198 CSFCVVPYTRGAEVSRPVADIVAETRRLIDAGVREITLIGQNVNAYRGADDKGREWGLAR 257

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
           LL  L+++ G+ RLRYTTSHP DM+  LI AH  +  LMPY+HLPVQSGSDRILK+MNRR
Sbjct: 258 LLSHLADMDGVERLRYTTSHPVDMAQDLIDAHESIGKLMPYVHLPVQSGSDRILKTMNRR 317

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369
           HT  +Y  II R+R  RPD+A+SSDFIVGFPGETD DF  TM LV ++G+A +FSFKYSP
Sbjct: 318 HTGADYLDIITRLRKARPDVAMSSDFIVGFPGETDADFEETMALVREVGFASSFSFKYSP 377

Query: 370 RLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV 429
           R GTPG+   +Q+DE  K ERL  LQ  L EQ+ +FN A VG+ I+VL EK G+ +G++ 
Sbjct: 378 RPGTPGAERDDQIDEEAKRERLAALQALLEEQRQAFNTATVGREIDVLFEKPGRHEGQIA 437

Query: 430 GRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           G+SP++Q+V +      IG + +V I     ++L G L+
Sbjct: 438 GKSPYMQAVHVEGDPEMIGKVARVAIVAAGSNSLAGRLL 476


>gi|182678041|ref|YP_001832187.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Beijerinckia
           indica subsp. indica ATCC 9039]
 gi|229890430|sp|B2IIK5|MIAB_BEII9 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|182633924|gb|ACB94698.1| RNA modification enzyme, MiaB family [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 510

 Score =  502 bits (1294), Expect = e-140,   Method: Composition-based stats.
 Identities = 237/465 (50%), Positives = 327/465 (70%), Gaps = 1/465 (0%)

Query: 6   KLIGVAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLI 65
           K  G+        D  +  ++ FVKSYGCQMNVYD+ RM D+   +GY   ++ +DADL+
Sbjct: 15  KADGLLSQERGTQDPLVNTRKLFVKSYGCQMNVYDAERMADLLAPEGYAETSAPEDADLV 74

Query: 66  VLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVN 125
           +LNTCHIRE AAEKV+S LG++R LK  +   G  + +VVAGCVAQAEGEEILRR   V+
Sbjct: 75  ILNTCHIREHAAEKVFSELGKLRLLKAEQQAAGRPVKIVVAGCVAQAEGEEILRRQKAVD 134

Query: 126 VVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEG 185
           +VVGPQ+Y+RLP+LL R      +VDT++  EDKF+ L         +RGV AF+T+QEG
Sbjct: 135 LVVGPQSYHRLPDLLRRVAHTPGLVDTEFPAEDKFDHLVAPQPEKIAERGVGAFVTVQEG 194

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG-LDGEK 244
           CDKFC+FCVVPYTRG E SR +  ++ E   LI +GV E+TL+GQNVNA+ G   + G  
Sbjct: 195 CDKFCSFCVVPYTRGAETSRPVEAILAEVETLIASGVREVTLIGQNVNAYHGFDAMTGAP 254

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304
            + + L+  ++ + GL+R+RYTTSHP DM + LI AH D+  LMP+LHLPVQSGSD+IL 
Sbjct: 255 ASLASLMARVAAMPGLLRIRYTTSHPNDMGEDLIAAHRDIPALMPFLHLPVQSGSDKILA 314

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
           +MNRRH A +Y ++I  IR+ RPDIA+SSDFIVGFPGET+ DF AT+ L++++G+A AFS
Sbjct: 315 AMNRRHKAGDYLELIASIRAARPDIALSSDFIVGFPGETEADFEATLALIEQVGFASAFS 374

Query: 365 FKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE 424
           FKYS R GTPG++  +Q+DE+VKA+RL  LQ  L EQ+ +FN A +G+++ VL EK G+ 
Sbjct: 375 FKYSQRPGTPGADRPDQIDEDVKAQRLARLQALLEEQRQAFNKAMIGRVLPVLFEKPGRH 434

Query: 425 KGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
            G++ G++P+LQ++        IG +  V I +   ++ +G L+ 
Sbjct: 435 PGQIAGKTPYLQALYAEGDKALIGTVQPVEILEAGPNSFHGRLLA 479


>gi|114319555|ref|YP_741238.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Alkalilimnicola ehrlichii
           MLHE-1]
 gi|114225949|gb|ABI55748.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Alkalilimnicola ehrlichii
           MLHE-1]
          Length = 508

 Score =  502 bits (1294), Expect = e-140,   Method: Composition-based stats.
 Identities = 208/450 (46%), Positives = 295/450 (65%), Gaps = 13/450 (2%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKV 80
            +  R +VK++GCQMN YDS +M D+    +GY RV+S  DAD+I+LNTC +REKA EKV
Sbjct: 60  AMTGRVYVKTHGCQMNEYDSDKMADVLVKERGYTRVDSPGDADVILLNTCSVREKAQEKV 119

Query: 81  YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140
           +S LGR ++ K          ++ V GCVA  EGE I++R+P V+VV GPQT +RLPE++
Sbjct: 120 FSELGRWKDYKTR-----NGAVIGVGGCVASQEGEAIVQRAPHVDVVFGPQTLHRLPEMI 174

Query: 141 ERARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           +RAR G R VVD  +   +KF+RL        R  G TAF++I EGC K+C+FCVVPYTR
Sbjct: 175 DRARDGGRSVVDVSFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCSKYCSFCVVPYTR 229

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G EISR    V+ E   L + GV E+TLLGQNVNA+RG   DG  C  + L++ ++ + G
Sbjct: 230 GEEISRPFEDVIAEVASLAEQGVREVTLLGQNVNAYRGPMADGTVCDLALLIHYVAALDG 289

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           + R+R+TTSHP + SD LI+A+ +   L  +LHLPVQSGSD +LK M R HTA EY   I
Sbjct: 290 IGRIRFTTSHPVEFSDSLIEAYREEPKLAGHLHLPVQSGSDLVLKLMKRGHTAAEYLDKI 349

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
           +RI++ RP I+I+SDFIVG+PGE++ DF  T+ L++ +G+ Q+FSF YSPR GTP +++ 
Sbjct: 350 ERIKAARPGISIASDFIVGYPGESEADFEDTLRLIEAVGFDQSFSFLYSPRPGTPAASLS 409

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSV 438
           +     VK ERL  LQ+ +       +++ VG +  VL++    K+  ++ GR+   + V
Sbjct: 410 DSTPAEVKRERLYRLQETINANARRISESMVGTVQRVLVDGRSRKDPNEISGRTENNRVV 469

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468
                   IG  ++VRIT+ K ++L GEL+
Sbjct: 470 NFAGHPRLIGHFVEVRITEAKPNSLRGELL 499


>gi|145633424|ref|ZP_01789154.1| lipoyl synthase [Haemophilus influenzae 3655]
 gi|319774971|ref|YP_004137459.1| isopentenyl-adenosine A37 tRNA methylthiolase [Haemophilus
           influenzae F3047]
 gi|329123127|ref|ZP_08251697.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Haemophilus aegyptius
           ATCC 11116]
 gi|144985987|gb|EDJ92589.1| lipoyl synthase [Haemophilus influenzae 3655]
 gi|317449562|emb|CBY85767.1| isopentenyl-adenosine A37 tRNA methylthiolase [Haemophilus
           influenzae F3047]
 gi|327471682|gb|EGF17124.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Haemophilus aegyptius
           ATCC 11116]
          Length = 474

 Score =  502 bits (1293), Expect = e-140,   Method: Composition-based stats.
 Identities = 209/449 (46%), Positives = 297/449 (66%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + Q+  +K++GCQMN YDS +M D+  S  G E   + ++AD+++LNTC IREKA EKV+
Sbjct: 1   MTQKLHIKTWGCQMNEYDSSKMADLLLSTHGLELTEAPEEADVLLLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR + LK    K   +L++ V GCVA  EGE I  R+P V+++ GPQT +RLPE++ 
Sbjct: 61  HQLGRWKELK----KNNPNLVIGVGGCVASQEGEHIRHRAPYVDIIFGPQTLHRLPEMIN 116

Query: 142 RARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           + R GK  VVD  +   +KF+RL        R  G TAF++I EGC+K+CTFCVVPYTRG
Sbjct: 117 QIRGGKSSVVDVSFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTFCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR +  V+ E  +L + GV E+ LLGQNVNA+RG   DG+ C+F++LL  ++ I G+
Sbjct: 172 EEVSRPVDDVLFEIAQLAEQGVREVNLLGQNVNAYRGPTHDGQICSFAELLRLVASIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            RLR+TTSHP + +D +I  + D   L+ +LHLPVQ+GSDR+L  M R HTA EY+ II 
Sbjct: 232 DRLRFTTSHPIEFTDDIIDVYRDTPELVSFLHLPVQAGSDRVLTMMKRGHTALEYKSIIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R+VRPDI ISSDFIVGFPGET +DF  TM+L+ ++ +  +FSF YS R GTP ++M +
Sbjct: 292 KLRAVRPDIQISSDFIVGFPGETAEDFEQTMNLIAQVNFDMSFSFVYSARPGTPAADMPD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439
            V E+ K +RL  LQ+++ +Q   F+   +G    VL+E   K+   +L GR+   + V 
Sbjct: 352 DVTEDEKKQRLYVLQERINQQAAQFSRRMLGTEQRVLVEGPSKKDIMELTGRTETNRIVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG  + V+ITDV  ++L GE+V
Sbjct: 412 FQGSPEMIGKFVDVKITDVYTNSLRGEVV 440


>gi|91974724|ref|YP_567383.1| tRNA-i(6)A37 modification enzyme MiaB [Rhodopseudomonas palustris
           BisB5]
 gi|123763150|sp|Q13EK7|MIAB_RHOPS RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|91681180|gb|ABE37482.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Rhodopseudomonas
           palustris BisB5]
          Length = 473

 Score =  502 bits (1293), Expect = e-140,   Method: Composition-based stats.
 Identities = 248/458 (54%), Positives = 330/458 (72%), Gaps = 10/458 (2%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
             P++  +KSYGCQMNVYD+ RM D+   +G+    ++DDADL++LNTCHIREKA+EKVY
Sbjct: 2   APPRKLHIKSYGCQMNVYDAQRMVDVLAPEGFVETATVDDADLVILNTCHIREKASEKVY 61

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S LGR+R  ++     G  + + VAGCVAQAEGEEI+RR+P+V+VVVGPQ+Y+ LP+LL 
Sbjct: 62  SELGRLRLARDEAASSGRRMQIAVAGCVAQAEGEEIVRRAPVVDVVVGPQSYHHLPQLLA 121

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           RA    R ++T++ VEDKF  L        R RG++AF+T+QEGCDKFCTFCVVPYTRG 
Sbjct: 122 RADQAGRALETEFPVEDKFGFLPQPRPETIRARGISAFVTVQEGCDKFCTFCVVPYTRGA 181

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E+SR +S ++D+ ++L DNGV EITL+GQNVNA+ G+G D    T   LL  L+ + G+V
Sbjct: 182 EVSRPVSAIIDDVKRLADNGVREITLIGQNVNAYHGEGPDSRAWTLGRLLRRLAAVPGIV 241

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           RLRY+TSHP D+ D LI+AH DLD LMP++HLPVQSGSD IL +MNR+HTA +YR++IDR
Sbjct: 242 RLRYSTSHPNDVDDELIEAHRDLDALMPFVHLPVQSGSDPILAAMNRKHTAADYRRVIDR 301

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
            R+VRP IA SSDFIVGFPGET+ DF AT+ LV +IGYA A+SFKYSPR GTP ++M E 
Sbjct: 302 FRAVRPQIAFSSDFIVGFPGETEADFAATLALVTQIGYAGAYSFKYSPRPGTPAADMQEM 361

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSV-VL 440
           V   V  ERL  LQ+ +  QQ +FN A +GQ ++VL E+ G++ G++VGR+ +LQ   V 
Sbjct: 362 VPAAVMDERLERLQQLIDSQQSAFNKAAIGQTVDVLFERAGRKPGQIVGRTAYLQPAHVF 421

Query: 441 NS---------KNHNIGDIIKVRITDVKISTLYGELVV 469
                       +  +G I+ VR+  ++  +L GEL  
Sbjct: 422 PGPMFLGPGMAPDSLVGQILPVRVDSLERYSLLGELAA 459


>gi|315497214|ref|YP_004086018.1| RNA modification enzyme, miab family [Asticcacaulis excentricus CB
           48]
 gi|315415226|gb|ADU11867.1| RNA modification enzyme, MiaB family [Asticcacaulis excentricus CB
           48]
          Length = 470

 Score =  502 bits (1292), Expect = e-140,   Method: Composition-based stats.
 Identities = 241/451 (53%), Positives = 312/451 (69%), Gaps = 6/451 (1%)

Query: 19  DQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAE 78
                 ++  +K+YGCQMNVYDS RM D+    GY   +  + ADL++LNTCHIREKAAE
Sbjct: 19  TASAASKKLHIKTYGCQMNVYDSERMADLLRPLGYAVSDQAEGADLVLLNTCHIREKAAE 78

Query: 79  KVYSFLGRIRNLK-NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLP 137
           KVYS +GR++ ++     +  G + + VAGCVAQAEGEEI+ R+P V++VVGPQ Y++LP
Sbjct: 79  KVYSEIGRLKVMRQEKEARGEGRMTIAVAGCVAQAEGEEIMNRAPAVDLVVGPQAYHQLP 138

Query: 138 ELLERARFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
           EL+ R    K   +  D++ EDKF+ LS       +  G TAFLT+QEGCDKFCTFCVVP
Sbjct: 139 ELIARTTRAKGERLKADFAPEDKFDALST----ERQASGPTAFLTVQEGCDKFCTFCVVP 194

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256
           YTRG E SR ++ +++EAR L   GV EITLLGQNVNA+ G+  DGE+ T   L+ +LSE
Sbjct: 195 YTRGAEWSRPVASILEEARSLASKGVREITLLGQNVNAYNGREADGEESTLPRLMQALSE 254

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           I+GL R+RYTTSHP DM+D LI+AH +   +MPYLHLPVQSGSD+IL++MNR+H    Y 
Sbjct: 255 IEGLDRIRYTTSHPNDMTDELIRAHAENPAVMPYLHLPVQSGSDKILRAMNRKHGRQAYI 314

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
            +I R+++  P+IA+S DFIVGFPGET+ DF  TMDL+  +GYA AFSFKYS R GTP +
Sbjct: 315 DLIARLKAAVPNIALSGDFIVGFPGETEKDFEDTMDLIRTVGYASAFSFKYSKRPGTPAA 374

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQ 436
            M  QVDE V   RL  LQ  + EQ  +F  + VGQ I+VL EK G+   + VGRSPWL 
Sbjct: 375 AMPGQVDEAVADGRLQALQALINEQAQAFKASLVGQTIDVLFEKPGRYGQQAVGRSPWLH 434

Query: 437 SVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
           +V      H IG I+ V+I  V  ++L GEL
Sbjct: 435 AVFAEDAAHLIGQIVPVKIVGVGNNSLIGEL 465


>gi|49475038|ref|YP_033079.1| hypothetical protein BH02260 [Bartonella henselae str. Houston-1]
 gi|81648272|sp|Q6G4V6|MIAB_BARHE RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|49237843|emb|CAF27038.1| hypothetical protein BH02260 [Bartonella henselae str. Houston-1]
          Length = 458

 Score =  502 bits (1292), Expect = e-140,   Method: Composition-based stats.
 Identities = 261/448 (58%), Positives = 338/448 (75%), Gaps = 2/448 (0%)

Query: 20  QCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEK 79
             + P++ F+K+YGCQMNVYDS RM D   S+GY    + +DADLI++NTCHIREKAAEK
Sbjct: 10  PPLAPKKVFIKTYGCQMNVYDSQRMTDSLSSKGYVATQTPNDADLILVNTCHIREKAAEK 69

Query: 80  VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL 139
           +YS LGR+R ++  R  +   L+V V GCVAQAEG EILRR+PIV++V+GPQ Y+RLP+L
Sbjct: 70  LYSDLGRLRVMRQERTPDKP-LMVGVTGCVAQAEGSEILRRAPIVDLVIGPQMYHRLPDL 128

Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           LE+ + GK++V T+Y+VEDKF  L   +    RKRGV+AFLT+QEGCDKFCTFCVVPYTR
Sbjct: 129 LEQTKQGKKIVATEYAVEDKFAHLPPHNKRAVRKRGVSAFLTVQEGCDKFCTFCVVPYTR 188

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G EISRS+ Q+ +EAR+LI+ GV EITLLGQNVN W G+ ++G+     DLLY L+++ G
Sbjct: 189 GAEISRSVEQITEEARQLIEAGVKEITLLGQNVNGWHGQNVNGKTWRLGDLLYHLAKLDG 248

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           L RLRYTTSHPRDM D LI AH DLD+LMPYLHLPVQSGSDRILK+MNR+H +  Y Q+I
Sbjct: 249 LKRLRYTTSHPRDMDDSLIAAHRDLDILMPYLHLPVQSGSDRILKAMNRQHKSIHYLQLI 308

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
           ++IR+ RPDIA S DFIVGFPGETD+DF  T+ L+ ++ Y+ A+SFKYSPR GT G+ M 
Sbjct: 309 EKIRNARPDIAFSGDFIVGFPGETDEDFEETIKLIKQVEYSSAYSFKYSPRPGTVGATMK 368

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV 439
             V+E VK  RL  LQ  L EQQ +F  + +GQ  +VLIEK G+  G++VGRSPWL  VV
Sbjct: 369 NHVEEAVKDARLQHLQVLLLEQQNAFLRSKIGQTTDVLIEKAGRHSGQMVGRSPWLLPVV 428

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGEL 467
           +++   + G +I + I +   ++  GE+
Sbjct: 429 VDT-QASTGTVIPIHIKNTSSNSFVGEM 455


>gi|85714185|ref|ZP_01045174.1| tRNA-i(6)A37 modification enzyme MiaB [Nitrobacter sp. Nb-311A]
 gi|85699311|gb|EAQ37179.1| tRNA-i(6)A37 modification enzyme MiaB [Nitrobacter sp. Nb-311A]
          Length = 478

 Score =  502 bits (1292), Expect = e-140,   Method: Composition-based stats.
 Identities = 249/455 (54%), Positives = 335/455 (73%)

Query: 13  MVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHI 72
           M+ ++ +  + P++  +KSYGCQMNVYD+ RM D    +GY    S +DADL++LNTCHI
Sbjct: 1   MLIEMPESRMPPRKLHIKSYGCQMNVYDAQRMADALAPEGYVETASAEDADLVILNTCHI 60

Query: 73  REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT 132
           REKA+EKVYS LGR+R  K+   ++G  + VVVAGCVAQAEGEEI+RR+P+V+VVVGPQ+
Sbjct: 61  REKASEKVYSELGRLRAAKDQAARDGRGMSVVVAGCVAQAEGEEIIRRAPVVDVVVGPQS 120

Query: 133 YYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTF 192
           Y+ LPELL RA+   R ++T++ V DKF  L        R RG++AF+T+QEGCDKFCTF
Sbjct: 121 YHHLPELLARAKAAGRALETEFPVADKFGFLPQPSRQAIRARGISAFVTVQEGCDKFCTF 180

Query: 193 CVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLY 252
           CVVPYTRG E+SR ++++ ++ ++L DNGV EITL+GQNVNA+ G+G DG    F  LLY
Sbjct: 181 CVVPYTRGAEVSRPVAKIAEDVQRLADNGVREITLIGQNVNAYHGEGPDGRPWPFGKLLY 240

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
            L+EI G+VRLRY+TSHPRD+ D LI AH  LD LMP++HLPVQSGSDRIL +MNRRH+A
Sbjct: 241 RLAEIPGIVRLRYSTSHPRDVEDSLIDAHRHLDALMPFVHLPVQSGSDRILAAMNRRHSA 300

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
            +YR++IDR R  R DIA SSDFIVGFPGET++DF AT+ LV +IGYA A+SFKYSPR G
Sbjct: 301 SDYRRVIDRFRHARQDIAFSSDFIVGFPGETEEDFAATLALVGQIGYAAAYSFKYSPRPG 360

Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS 432
           TP + + E V       RL  LQK +  QQ +FN   +G+ I+VL E+ G++ G++ GR+
Sbjct: 361 TPAAELREAVSTADMDARLERLQKLIDSQQSAFNRTALGRTIDVLFERAGRKPGQIAGRT 420

Query: 433 PWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
           P+LQ   + + +  IG ++ V +  ++  +L+G L
Sbjct: 421 PYLQPAHVEASDAIIGQVLPVTVASLERYSLFGTL 455


>gi|293390538|ref|ZP_06634872.1| lipoyl synthase [Aggregatibacter actinomycetemcomitans D7S-1]
 gi|290951072|gb|EFE01191.1| lipoyl synthase [Aggregatibacter actinomycetemcomitans D7S-1]
          Length = 474

 Score =  501 bits (1290), Expect = e-139,   Method: Composition-based stats.
 Identities = 205/449 (45%), Positives = 293/449 (65%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + Q+  +K++GCQMN YDS +M D+  S  G E     ++AD+++LNTC IREKA EKV+
Sbjct: 1   MTQKLHIKTWGCQMNEYDSSKMADLLHSTHGLELTEVPEEADVLLLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR + LK    K   +LL+ V GCVA  EGE I  R+P V+++ GPQT +RLPE++ 
Sbjct: 61  HQLGRWKELK----KSNPNLLIGVGGCVASQEGEHIRTRAPYVDIIFGPQTLHRLPEMIN 116

Query: 142 RARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           + R GK  VVD  +   +KF+RL        R  G TAF++I EGC+K+CT+CVVPYTRG
Sbjct: 117 QIRGGKSAVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTYCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR +  ++ E  +L + GV E+ LLGQNVNA+RG   DG+ CTF++LL  ++ I G+
Sbjct: 172 EEVSRPVDDILFEIAQLAEQGVREVNLLGQNVNAYRGPTFDGDICTFAELLRLVAAIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            RLR+TTSHP + +D +I  + D   L+ +LHLPVQSGSD +L  M R HTA EY+ II 
Sbjct: 232 DRLRFTTSHPIEFTDDIIDVYRDTPELVSFLHLPVQSGSDHVLNMMKRGHTAIEYKSIIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++++VRP I +SSDFIVGFPGET++DF  TM+L+ ++ +  +FSF YS R GTP ++  +
Sbjct: 292 KLKAVRPHIQVSSDFIVGFPGETNEDFEQTMNLIAQVNFDMSFSFIYSARPGTPAADYPD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439
            V E  K +RL  LQ+++  Q   F+ A +G    VL+E   K+   +L GR+   + V 
Sbjct: 352 DVSEEEKKQRLYLLQQRINNQAAQFSRAMLGSEQRVLVEGPSKKDIMELTGRTETNRIVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG  + ++ITDV  ++L GE+V
Sbjct: 412 FQGTPDMIGKFVDIKITDVFTNSLRGEVV 440


>gi|218531460|ref|YP_002422276.1| (dimethylallyl)adenosine tRNA methylthiotransferase
           [Methylobacterium chloromethanicum CM4]
 gi|218523763|gb|ACK84348.1| RNA modification enzyme, MiaB family [Methylobacterium
           chloromethanicum CM4]
          Length = 462

 Score =  501 bits (1289), Expect = e-139,   Method: Composition-based stats.
 Identities = 253/440 (57%), Positives = 328/440 (74%), Gaps = 6/440 (1%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ +VKSYGCQMN YD+ RM D+  ++GY   +++++AD++VLNTCHIREKAAEKVYS L
Sbjct: 18  KKAYVKSYGCQMNAYDAGRMADVLAAEGYSATDTVEEADVVVLNTCHIREKAAEKVYSEL 77

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR+R LK  R + G +  +VVAGCVAQAEG EIL R+P V+VVVGPQ+Y+RLP+LL ++R
Sbjct: 78  GRLRVLKGDRAESGQETRIVVAGCVAQAEGREILSRAPAVDVVVGPQSYHRLPDLLRQSR 137

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
              RVVDT++  EDKF+ L        R RGVT FLT+QEGCDKFC FCVVPYTRG E+S
Sbjct: 138 E-TRVVDTEFPAEDKFDHLP-----ARRNRGVTGFLTVQEGCDKFCAFCVVPYTRGAEVS 191

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           RS++ VV+EAR+L++ GV EITL+GQNVNA+ G G DG   T   L+ +LS + GL+RLR
Sbjct: 192 RSVAAVVEEARRLVEGGVREITLIGQNVNAYHGDGPDGAPATLGQLMDALSAVPGLLRLR 251

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           YTTSHP D +D LI AH    ++MPYLHLPVQSGSDRIL +MNRRHT   YR++I+RIR+
Sbjct: 252 YTTSHPNDFADDLIAAHATNPLVMPYLHLPVQSGSDRILHAMNRRHTGDAYRRLIERIRN 311

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
            RPDIA+SSDFIVGFPGETD DF  T+ LV  IG++ AFSFKYSPR GTP +   + V E
Sbjct: 312 ARPDIALSSDFIVGFPGETDADFAETLRLVSDIGFSAAFSFKYSPRAGTPAAEREDAVPE 371

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
            VK ERL  LQ  L  Q+ ++N A VG + E+L+EK G+  G++ G++P LQ+V  ++  
Sbjct: 372 AVKTERLAALQDLLDRQRHAYNAASVGTLTEILVEKTGRHPGQVAGKTPHLQAVQFDAPA 431

Query: 445 HNIGDIIKVRITDVKISTLY 464
             IG ++ VRIT    ++L+
Sbjct: 432 STIGTVVPVRITRAGSNSLF 451


>gi|260582067|ref|ZP_05849862.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Haemophilus influenzae
           NT127]
 gi|260094957|gb|EEW78850.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Haemophilus influenzae
           NT127]
          Length = 474

 Score =  501 bits (1289), Expect = e-139,   Method: Composition-based stats.
 Identities = 210/449 (46%), Positives = 297/449 (66%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + Q+  +K++GCQMN YDS +M D+  S  G E   + ++AD+++LNTC IREKA EKV+
Sbjct: 1   MTQKLHIKTWGCQMNEYDSSKMADLLLSTHGLELTEAPEEADVLLLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR + LK    K   +L++ V GCVA  EGE I  R+P V+++ GPQT +RLPE++ 
Sbjct: 61  HQLGRWKELK----KNNPNLVIGVGGCVASQEGEHIRHRAPYVDIIFGPQTLHRLPEMIN 116

Query: 142 RARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           + R GK  VVD  +   +KF+RL        R  G TAF++I EGC+K+CTFCVVPYTRG
Sbjct: 117 QIRGGKSSVVDVSFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTFCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR +  V+ E  +L D GV E+ LLGQNVNA+RG   DG+ C+F++LL  ++ I G+
Sbjct: 172 EEVSRPVDDVLFEIAQLADQGVREVNLLGQNVNAYRGPTHDGQICSFAELLRLVASIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            RLR+TTSHP + +D +I  + D   L+ +LHLPVQ+GSDR+L  M R HTA EY+ II 
Sbjct: 232 DRLRFTTSHPIEFTDDIIDVYRDTPELVSFLHLPVQAGSDRVLTMMKRAHTALEYKSIIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R+VRPDI ISSDFIVGFPGET +DF  TM+L+ ++ +  +FSF YS R GTP ++M +
Sbjct: 292 KLRAVRPDIQISSDFIVGFPGETAEDFEQTMNLIAQVNFDMSFSFVYSARPGTPAADMPD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439
            V E+ K +RL  LQ+++ +Q   F+   +G    VL+E   K+   +L GR+   + V 
Sbjct: 352 DVTEDEKKQRLYVLQERINQQAAQFSRRMLGTEQRVLVEGPSKKDIMELTGRTETNRIVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG  + V+ITDV  ++L GE+V
Sbjct: 412 FQGSPEMIGKFVDVKITDVYTNSLRGEVV 440


>gi|261868524|ref|YP_003256446.1| (dimethylallyl)adenosine tRNA methylthiotransferase
           [Aggregatibacter actinomycetemcomitans D11S-1]
 gi|261413856|gb|ACX83227.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 474

 Score =  501 bits (1289), Expect = e-139,   Method: Composition-based stats.
 Identities = 205/449 (45%), Positives = 293/449 (65%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + Q+  +K++GCQMN YDS +M D+  S  G E     ++AD+++LNTC IREKA EKV+
Sbjct: 1   MTQKLHIKTWGCQMNEYDSSKMADLLHSTHGLELTEVPEEADVLLLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR + LK    K   +LL+ V GCVA  EGE I  R+P V+++ GPQT +RLPE++ 
Sbjct: 61  HQLGRWKELK----KSNPNLLIGVGGCVASQEGEHIRTRAPYVDIIFGPQTLHRLPEMIN 116

Query: 142 RARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           + R GK  VVD  +   +KF+RL        R  G TAF++I EGC+K+CT+CVVPYTRG
Sbjct: 117 QIRGGKSAVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTYCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR +  ++ E  +L + GV E+ LLGQNVNA+RG   DG+ CTF++LL  ++ I G+
Sbjct: 172 EEVSRPVDDILFEIAQLAEQGVREVNLLGQNVNAYRGPTFDGDICTFAELLRLVAAIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            RLR+TTSHP + +D +I  + D   L+ +LHLPVQSGSD +L  M R HTA EY+ II 
Sbjct: 232 DRLRFTTSHPIEFTDDIIDVYRDTPELVSFLHLPVQSGSDHVLNMMKRGHTAIEYKSIIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++++VRP I +SSDFIVGFPGET++DF  TM+L+ ++ +  +FSF YS R GTP ++  +
Sbjct: 292 KLKAVRPHIQVSSDFIVGFPGETNEDFEQTMNLIAQVNFDMSFSFIYSARPGTPAADYPD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439
            V E  K +RL  LQ+++  Q   F+ A +G    VL+E   K+   +L GR+   + V 
Sbjct: 352 DVSEEEKKQRLYLLQQRINNQAAQFSRAMLGSEQRVLVEGPSKKDIMELTGRTETNRIVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG  + ++ITDV  ++L GE+V
Sbjct: 412 FQGTPDMIGKFVDIKITDVFTNSLRGEVV 440


>gi|302381348|ref|YP_003817171.1| RNA modification enzyme, MiaB family [Brevundimonas subvibrioides
           ATCC 15264]
 gi|302191976|gb|ADK99547.1| RNA modification enzyme, MiaB family [Brevundimonas subvibrioides
           ATCC 15264]
          Length = 466

 Score =  501 bits (1289), Expect = e-139,   Method: Composition-based stats.
 Identities = 251/461 (54%), Positives = 320/461 (69%), Gaps = 4/461 (0%)

Query: 10  VAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNT 69
           V  MV   V     P+R F+K+YGCQMNVYDS RM D+    GY   ++ + AD ++LNT
Sbjct: 6   VPPMVETAVPPA-APKRLFIKTYGCQMNVYDSERMADVLRPLGYAPTDTPEGADFVILNT 64

Query: 70  CHIREKAAEKVYSFLGRIRNLK-NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVV 128
           CHIREKAAEKVYS LG++R +K +     GG + + VAGCVAQAEGEEI+RR P V++VV
Sbjct: 65  CHIREKAAEKVYSELGKLRLMKLDKAASGGGAMTIAVAGCVAQAEGEEIMRRQPAVDIVV 124

Query: 129 GPQTYYRLPELLER-ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCD 187
           GPQ Y++LPELL R AR     +  D++  +KF+ ++    G     G TAFLT+QEGCD
Sbjct: 125 GPQAYHQLPELLTRTARARGERIGADFAPNEKFDAMAPELLGVRGVDGPTAFLTVQEGCD 184

Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTF 247
           KFC+FCVVPYTRG E SR ++ V+DEAR L   GV E+TLLGQNVNA+ G G DG   T 
Sbjct: 185 KFCSFCVVPYTRGAEWSRPVADVLDEARGLAAQGVREVTLLGQNVNAYDGAGPDG-VWTL 243

Query: 248 SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307
           + L  +L+E+ GL R+RYTTSHP DMS+ LI+AH +LD LMPYLHLPVQSGSDRIL++MN
Sbjct: 244 AKLARALAEVPGLDRIRYTTSHPNDMSEDLIEAHRELDALMPYLHLPVQSGSDRILRAMN 303

Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           R+H   +Y  +I RIR  RPDIAIS DFIVGFPGETD DF  T+ LV ++GYA AF+F Y
Sbjct: 304 RKHGRAKYIDLIGRIREARPDIAISGDFIVGFPGETDRDFEETLGLVREVGYASAFTFMY 363

Query: 368 SPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK 427
           SPR GTP + M  QV   V   RL  LQ  + EQQ++FN A  G+ + VL EK G+   +
Sbjct: 364 SPRPGTPAATMGTQVPPEVALARLHALQALIVEQQMAFNVAQAGKTLNVLFEKKGRNGRQ 423

Query: 428 LVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            +GRSP+LQSV +   +H +G I+ V I   + ++L G L+
Sbjct: 424 AIGRSPYLQSVHVEDADHLMGRIVPVLIEHGQQNSLKGRLI 464


>gi|145635209|ref|ZP_01790913.1| uracil-DNA glycosylase [Haemophilus influenzae PittAA]
 gi|145267488|gb|EDK07488.1| uracil-DNA glycosylase [Haemophilus influenzae PittAA]
          Length = 474

 Score =  501 bits (1289), Expect = e-139,   Method: Composition-based stats.
 Identities = 209/449 (46%), Positives = 297/449 (66%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + Q+  +K++GCQMN YDS +M D+  S  G E   + ++AD+++LNTC IREKA EKV+
Sbjct: 1   MTQKLHIKTWGCQMNEYDSSKMADLLLSTHGLELTEAPEEADVLLLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR + LK    K   +L++ V GCVA  EGE I  R+P V+++ GPQT +RLPE++ 
Sbjct: 61  HQLGRWKELK----KNNPNLVIGVGGCVASQEGEHIRHRAPYVDIIFGPQTLHRLPEMIN 116

Query: 142 RARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           + R GK  VVD  +   +KF+RL        R  G TAF++I EGC+K+CTFCVVPYTRG
Sbjct: 117 QIRGGKSSVVDVSFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTFCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR +  V+ E  +L + GV E+ LLGQNVNA+RG   DG+ C+F++LL  ++ I G+
Sbjct: 172 EEVSRPVDDVLFEIAQLAEQGVREVNLLGQNVNAYRGPTHDGQICSFAELLRLVASIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            RLR+TTSHP + +D +I  + D   L+ +LHLPVQ+GSDR+L  M R HTA EY+ II 
Sbjct: 232 DRLRFTTSHPIEFTDDIIDVYRDTPELVSFLHLPVQAGSDRVLTMMKRAHTALEYKSIIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R+VRPDI ISSDFIVGFPGET +DF  TM+L+ ++ +  +FSF YS R GTP ++M +
Sbjct: 292 KLRAVRPDIQISSDFIVGFPGETSEDFEQTMNLIAQVNFDMSFSFVYSARPGTPAADMPD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439
            V E+ K +RL  LQ+++ +Q   F+   +G    VL+E   K+   +L GR+   + V 
Sbjct: 352 DVTEDEKKQRLYVLQERINQQAAQFSRRMLGTEQRVLVEGPSKKDIMELTGRTETNRIVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG  + V+ITDV  ++L GE+V
Sbjct: 412 FQGSPEMIGKFVDVKITDVYTNSLRGEVV 440


>gi|315634739|ref|ZP_07890023.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Aggregatibacter segnis
           ATCC 33393]
 gi|315476687|gb|EFU67435.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Aggregatibacter segnis
           ATCC 33393]
          Length = 474

 Score =  501 bits (1289), Expect = e-139,   Method: Composition-based stats.
 Identities = 208/449 (46%), Positives = 294/449 (65%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + Q+  +K++GCQMN YDS +M D+  S  G E     ++AD+++LNTC IREKA EKV+
Sbjct: 1   MTQKLHIKTWGCQMNEYDSSKMADLLHSTHGLELTEVPEEADVLLLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR + LK    K   +LL+ V GCVA  EGE I  R+P V++V GPQT +RLPE++ 
Sbjct: 61  HQLGRWKELK----KNNPNLLIGVGGCVASQEGEHIRTRAPYVDIVFGPQTLHRLPEMIN 116

Query: 142 RARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           + R GK  VVD  +   +KF+ L        R  G TAF++I EGC+K+CT+CVVPYTRG
Sbjct: 117 QIRGGKSSVVDISFPEIEKFDCLP-----EPRAEGPTAFVSIMEGCNKYCTYCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR +  ++ E  +L   GV E+ LLGQNVNA+RG   DGE CTF++LL  ++ I G+
Sbjct: 172 EEVSRPVDDILFEIAQLAAQGVREVNLLGQNVNAYRGPTFDGEICTFAELLRLVAAIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            RLR+TTSHP + +D +I  + D   L+ +LHLPVQSGSDR+L  M R HTA EY+ II 
Sbjct: 232 DRLRFTTSHPIEFTDDIIDVYRDTPELVSFLHLPVQSGSDRVLTMMKRGHTALEYKSIIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++++VRP+I ISSDFIVGFPGET++DF  TM+L+ ++ +  +FSF YS R GTP ++  +
Sbjct: 292 KLKAVRPNIQISSDFIVGFPGETNEDFEQTMNLIAQVNFDMSFSFIYSARPGTPAADYPD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439
            V E+ K +RL  LQ+++  Q   F+ A +G    VL+E   K+   +L GR+   + V 
Sbjct: 352 DVTEDEKKQRLYLLQQRINNQAAQFSRAMLGTEQRVLVEGPSKKDIMELTGRTETNRIVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG  + ++ITDV  ++L GE+V
Sbjct: 412 FQGSPEMIGKFVDIKITDVFTNSLRGEVV 440


>gi|238893721|ref|YP_002918455.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Klebsiella
           pneumoniae NTUH-K2044]
 gi|238546037|dbj|BAH62388.1| putative tRNA-thiotransferase and tRNA-methylthiotransferase
           bifunctional enzyme [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
          Length = 536

 Score =  501 bits (1289), Expect = e-139,   Method: Composition-based stats.
 Identities = 193/449 (42%), Positives = 288/449 (64%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++  +K++GCQMN YDS +M D+  +  GY+     ++AD+++LNTC IREKA EKV+
Sbjct: 63  MTKKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTEVAEEADVLLLNTCSIREKAQEKVF 122

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR + LK        DL++ V GCVA  EG+ I +R+  V+++ GPQT +RLPE++ 
Sbjct: 123 HQLGRWKLLKEK----NPDLIIGVGGCVASQEGDHIRQRAHYVDIIFGPQTLHRLPEMIN 178

Query: 142 RARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
             R  +  VVD  +   +KF+RL        R  G TAF++I EGC+K+CT+CVVPYTRG
Sbjct: 179 SVRGNRSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTYCVVPYTRG 233

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR    ++ E  +L   GV E+ LLGQNVNAWRG+  DG   +F+DLL  ++ I G+
Sbjct: 234 EEVSRPCDDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTTGSFADLLRLVAAIDGI 293

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+TTSHP + +D +I  + D   L+ +LHLPVQSGSDR+L  M R HTA EY+ II 
Sbjct: 294 DRIRFTTSHPIEFTDDIIDVYRDTPELVSFLHLPVQSGSDRVLNLMGRTHTALEYKAIIR 353

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R  RPDI ISSDFIVGFPGET +DF  TM L+  + +  ++SF +S R GTP ++M++
Sbjct: 354 KLREARPDIQISSDFIVGFPGETTEDFEKTMKLIADVNFDMSYSFIFSARPGTPAADMVD 413

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439
            V E  K +RL  LQ+++ +Q ++++   +G +  +L+E   ++   +L GR+   + V 
Sbjct: 414 DVPEADKKQRLYILQERINQQAMAWSRRMLGTVQRILVEGTSRKNIMELSGRTENNRVVN 473

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  +G  + V I DV  ++L G++V
Sbjct: 474 FEGTPDLVGKFVDVEIVDVYTNSLRGKIV 502


>gi|254562377|ref|YP_003069472.1| tRNA modification enzyme MiaB [Methylobacterium extorquens DM4]
 gi|254269655|emb|CAX25627.1| tRNA modification enzyme MiaB, putative isopentenyl-adenosine A37
           tRNA methylthiolase [Methylobacterium extorquens DM4]
          Length = 446

 Score =  500 bits (1288), Expect = e-139,   Method: Composition-based stats.
 Identities = 256/440 (58%), Positives = 329/440 (74%), Gaps = 6/440 (1%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ +VKSYGCQMN YD+ RM D+  ++GY   +++++AD++VLNTCHIREKAAEKVYS L
Sbjct: 2   KKAYVKSYGCQMNAYDAGRMADVLAAEGYSATDTVEEADVVVLNTCHIREKAAEKVYSEL 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR+R LK  R + G D  +VVAGCVAQAEG EIL R+P V+VVVGPQ+Y+RLP+LL ++R
Sbjct: 62  GRLRVLKGERAESGQDTRIVVAGCVAQAEGREILSRAPAVDVVVGPQSYHRLPDLLRQSR 121

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
              RVVDT++  EDKF+ L        R RGVT FLT+QEGCDKFC FCVVPYTRG E+S
Sbjct: 122 E-TRVVDTEFPAEDKFDHLP-----ARRNRGVTGFLTVQEGCDKFCAFCVVPYTRGAEVS 175

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           RS++ VVDEAR+L++ GV EITL+GQNVNA+ G G DG   T   L+ +LS + GL+RLR
Sbjct: 176 RSVAAVVDEARRLVEGGVREITLIGQNVNAYHGDGPDGAPATLGHLMDALSAVPGLLRLR 235

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           YTTSHP D +D LI AH    ++MPYLHLPVQSGSDRIL++MNRRHT   YR++I+RIR+
Sbjct: 236 YTTSHPNDFADDLIAAHATNPLVMPYLHLPVQSGSDRILQAMNRRHTGDAYRRLIERIRN 295

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
            RPDIA+SSDFIVGFPGETD DF  TM LV  IG++ AFSFKYSPR GTP +   + V E
Sbjct: 296 ARPDIALSSDFIVGFPGETDADFAETMRLVSDIGFSAAFSFKYSPRAGTPAAEREDAVPE 355

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
            VK ERL  LQ  L  Q+ ++N A VG + E+L+EK G+  G++ G++P LQ+V  ++  
Sbjct: 356 AVKTERLAALQDLLDRQRHAYNAASVGTLTEILVEKTGRHPGQVAGKTPHLQAVQFDAPA 415

Query: 445 HNIGDIIKVRITDVKISTLY 464
             IG ++ VRIT    ++L+
Sbjct: 416 STIGTVVPVRITRAGSNSLF 435


>gi|16271994|ref|NP_438192.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Haemophilus
           influenzae Rd KW20]
 gi|145629127|ref|ZP_01784926.1| lipoyl synthase [Haemophilus influenzae 22.1-21]
 gi|145630690|ref|ZP_01786469.1| lipoyl synthase [Haemophilus influenzae R3021]
 gi|145636777|ref|ZP_01792443.1| lipoyl synthase [Haemophilus influenzae PittHH]
 gi|145639692|ref|ZP_01795295.1| lipoyl synthase [Haemophilus influenzae PittII]
 gi|148827177|ref|YP_001291930.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Haemophilus
           influenzae PittGG]
 gi|229845365|ref|ZP_04465496.1| hypothetical protein CGSHi6P18H1_00417 [Haemophilus influenzae
           6P18H1]
 gi|260580677|ref|ZP_05848504.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Haemophilus influenzae
           RdAW]
 gi|319896441|ref|YP_004134634.1| isopentenyl-adenosine a37 tRNA methylthiolase [Haemophilus
           influenzae F3031]
 gi|2501533|sp|Q57163|MIAB_HAEIN RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|229890551|sp|A5UFJ1|MIAB_HAEIG RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|1572963|gb|AAC21697.1| conserved hypothetical protein [Haemophilus influenzae Rd KW20]
 gi|144978630|gb|EDJ88353.1| lipoyl synthase [Haemophilus influenzae 22.1-21]
 gi|144983816|gb|EDJ91266.1| lipoyl synthase [Haemophilus influenzae R3021]
 gi|145270075|gb|EDK10012.1| lipoyl synthase [Haemophilus influenzae PittHH]
 gi|145271249|gb|EDK11163.1| lipoyl synthase [Haemophilus influenzae PittII]
 gi|148718419|gb|ABQ99546.1| hypothetical protein CGSHiGG_02565 [Haemophilus influenzae PittGG]
 gi|229811673|gb|EEP47371.1| hypothetical protein CGSHi6P18H1_00417 [Haemophilus influenzae
           6P18H1]
 gi|260092739|gb|EEW76675.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Haemophilus influenzae
           RdAW]
 gi|301168620|emb|CBW28210.1| isopentenyl-adenosine A37 tRNA methylthiolase [Haemophilus
           influenzae 10810]
 gi|309750662|gb|ADO80646.1| 2-methylthioadenine synthetase (MiaB) [Haemophilus influenzae
           R2866]
 gi|317431943|emb|CBY80291.1| isopentenyl-adenosine A37 tRNA methylthiolase [Haemophilus
           influenzae F3031]
          Length = 474

 Score =  500 bits (1287), Expect = e-139,   Method: Composition-based stats.
 Identities = 209/449 (46%), Positives = 297/449 (66%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + Q+  +K++GCQMN YDS +M D+  S  G E   + ++AD+++LNTC IREKA EKV+
Sbjct: 1   MTQKLHIKTWGCQMNEYDSSKMADLLLSTHGLELTEAPEEADVLLLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR + LK    K   +L++ V GCVA  EGE I  R+P V+++ GPQT +RLPE++ 
Sbjct: 61  HQLGRWKELK----KNNPNLVIGVGGCVASQEGEHIRHRAPYVDIIFGPQTLHRLPEMIN 116

Query: 142 RARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           + R GK  VVD  +   +KF+RL        R  G TAF++I EGC+K+CTFCVVPYTRG
Sbjct: 117 QIRGGKSSVVDVSFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTFCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR +  V+ E  +L + GV E+ LLGQNVNA+RG   DG+ C+F++LL  ++ I G+
Sbjct: 172 EEVSRPVDDVLFEIAQLAEQGVREVNLLGQNVNAYRGPTHDGQICSFAELLRLVASIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            RLR+TTSHP + +D +I  + D   L+ +LHLPVQ+GSDR+L  M R HTA EY+ II 
Sbjct: 232 DRLRFTTSHPIEFTDDIIDVYRDTPELVSFLHLPVQAGSDRVLTMMKRAHTALEYKSIIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R+VRPDI ISSDFIVGFPGET +DF  TM+L+ ++ +  +FSF YS R GTP ++M +
Sbjct: 292 KLRAVRPDIQISSDFIVGFPGETAEDFEQTMNLIAQVNFDMSFSFVYSARPGTPAADMPD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439
            V E+ K +RL  LQ+++ +Q   F+   +G    VL+E   K+   +L GR+   + V 
Sbjct: 352 DVTEDEKKQRLYVLQERINQQAAQFSRRMLGTEQRVLVEGPSKKDIMELTGRTETNRIVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG  + V+ITDV  ++L GE+V
Sbjct: 412 FQGSPEMIGKFVDVKITDVYTNSLRGEVV 440


>gi|75674213|ref|YP_316634.1| tRNA-i(6)A37 modification enzyme MiaB [Nitrobacter winogradskyi
           Nb-255]
 gi|123745611|sp|Q3SMT7|MIAB_NITWN RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|74419083|gb|ABA03282.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Nitrobacter winogradskyi
           Nb-255]
          Length = 477

 Score =  500 bits (1287), Expect = e-139,   Method: Composition-based stats.
 Identities = 250/451 (55%), Positives = 335/451 (74%)

Query: 17  IVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA 76
           + +  + P++  +KSYGCQMNVYD+ RM D    +GY    S +DADL++LNTCHIREKA
Sbjct: 1   MPESRMPPRKLHIKSYGCQMNVYDAQRMADTLAVEGYVETTSAEDADLVILNTCHIREKA 60

Query: 77  AEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL 136
           +EKVYS LGR+R  K+   ++G  + +VVAGCVAQAEGEEI+RR+P+V+VVVGPQ+Y+ L
Sbjct: 61  SEKVYSELGRLRAAKDQAARDGRGMNIVVAGCVAQAEGEEIIRRAPMVDVVVGPQSYHHL 120

Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
           P+LL RA+   R ++T++ V DKF  L        R RG++AF+T+QEGCDKFCTFCVVP
Sbjct: 121 PQLLARAKTCGRALETEFPVADKFGFLPQPSRQAIRSRGISAFVTVQEGCDKFCTFCVVP 180

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256
           YTRG E SR +++VV++ R+L DNGV EITL+GQNVNA+ G+G DG    F  LLY L+ 
Sbjct: 181 YTRGAEASRPVAKVVEDVRRLADNGVREITLIGQNVNAYHGEGPDGRPWPFGKLLYRLAG 240

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           I G+VRLRY+TSHPRD+ D LI AH DLD LMP++HLPVQSGSDRIL +MNRRHTA +YR
Sbjct: 241 IPGIVRLRYSTSHPRDVEDTLIDAHRDLDALMPFVHLPVQSGSDRILAAMNRRHTADDYR 300

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
           ++IDR R  RPDIA SSDFIVGFPGET++DF AT+ LV +IGYA A+SFKYSPR GTP +
Sbjct: 301 RVIDRFRQARPDIAFSSDFIVGFPGETEEDFAATLALVGQIGYAAAYSFKYSPRPGTPAA 360

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQ 436
           +M E V      +RL+ LQ  +  QQ +FN   +G+ I+VL ++ G++ G++VGR+ +LQ
Sbjct: 361 DMQETVSTADMDQRLVQLQNLIDSQQSAFNRTALGRTIDVLFDRAGRKPGQIVGRTAYLQ 420

Query: 437 SVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
              + + +  IG ++ V +  ++  +L+G L
Sbjct: 421 PAHVEASDAIIGQVLPVTVASLERYSLFGTL 451


>gi|262274718|ref|ZP_06052529.1| tRNA-i(6)A37 methylthiotransferase [Grimontia hollisae CIP 101886]
 gi|262221281|gb|EEY72595.1| tRNA-i(6)A37 methylthiotransferase [Grimontia hollisae CIP 101886]
          Length = 474

 Score =  499 bits (1286), Expect = e-139,   Method: Composition-based stats.
 Identities = 207/449 (46%), Positives = 294/449 (65%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++  +K++GCQMN YDS +M D+  +  GYE     ++AD+++LNTC IREKA EKV+
Sbjct: 1   MAKKLLIKTWGCQMNEYDSSKMADLLNATGGYELTEDPEEADVLLLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR +NLK+        L++ V GCVA  EG+ I  R+P V+V+ GPQT +RLPE+++
Sbjct: 61  HQLGRWKNLKDQ----KPGLVIGVGGCVATQEGDHIRERAPYVDVIFGPQTLHRLPEMIK 116

Query: 142 RARFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           +++     V+D  +   +KF+RL        R  G TAF++I EGC K+CTFCVVPYTRG
Sbjct: 117 QSQQDDAPVMDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCSKYCTFCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR L  V+ E  +L + GV E+ LLGQNVNA+RG+  DGE C+F++LL  ++ I G+
Sbjct: 172 EEVSRPLDDVLYEIAQLAEQGVREVNLLGQNVNAYRGEMHDGEICSFAELLRYVAAIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+RYTTSHP + +D +I+ + D   ++ +LHLPVQSGSDRIL  M R HTA EY+  I 
Sbjct: 232 DRIRYTTSHPIEFTDDIIEVYKDTPEVVSFLHLPVQSGSDRILTMMKRPHTAIEYKSKIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R  RP IAISSDFIVGFPGETD DF ATM L+  + +  +FSF YSPR GTP ++M +
Sbjct: 292 KLREARPGIAISSDFIVGFPGETDADFEATMKLIRDVNFDMSFSFIYSPRPGTPAADMPD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439
              E VK ERL  LQ+++  Q + ++   +G    +L+E   K+   +L GR+   + V 
Sbjct: 352 DTPEQVKKERLYELQQQINAQAMIYSRQMLGTEQRILVEGPSKKNLMELRGRTENNRVVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG  + V+IT+V  ++L GELV
Sbjct: 412 FEGAVDLIGQFVDVKITEVLPNSLRGELV 440


>gi|113461298|ref|YP_719367.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Haemophilus
           somnus 129PT]
 gi|170717832|ref|YP_001784892.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Haemophilus
           somnus 2336]
 gi|123132137|sp|Q0I3Z1|MIAB_HAES1 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|229890552|sp|B0UUU9|MIAB_HAES2 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|112823341|gb|ABI25430.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Haemophilus somnus 129PT]
 gi|168825961|gb|ACA31332.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Haemophilus somnus 2336]
          Length = 474

 Score =  499 bits (1285), Expect = e-139,   Method: Composition-based stats.
 Identities = 208/449 (46%), Positives = 295/449 (65%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + Q+  +K++GCQMN YDS +M D+  +  G E  +  ++AD+++LNTC IREKA EKV+
Sbjct: 1   MTQKLHIKTWGCQMNEYDSSKMADLLLNTHGLELTDVPEEADVLLLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR + LK    K+   L++ V GCVA  EGE I  R+P V++V GPQT +RLPE++ 
Sbjct: 61  HQLGRWKELK----KQNPSLVIGVGGCVASQEGEHIRSRAPYVDIVFGPQTLHRLPEMIN 116

Query: 142 RARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           + R GK  VVD  +   +KF+RL        R  G TAF++I EGC+K+C+FCVVPYTRG
Sbjct: 117 QIRGGKSAVVDVSFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCSFCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR +  V+ E  +L + GV E+ LLGQNVNA+RG   DG  C+F++LL  ++ I G+
Sbjct: 172 EEVSRPVDDVLFEIAQLAEQGVREVNLLGQNVNAYRGPTHDGGICSFAELLRLVASIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            RLR+TTSHP + +D +I  + D   L+ +LHLPVQSGSDR+L  M R HTA EY+ II 
Sbjct: 232 DRLRFTTSHPIEFTDDIIDVYADTPELVSFLHLPVQSGSDRVLNLMKRNHTALEYKSIIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           +++ VRP+I ISSDFIVGFPGETD DF  TM+L+ ++ +  +FSF YS R GTP ++M +
Sbjct: 292 KLKKVRPNIQISSDFIVGFPGETDQDFEDTMNLIAQVNFDMSFSFIYSARPGTPAADMPD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439
            V E  K +RL  LQ+++  Q   F+ A +G    VL+E   K+   +L GR+   + V 
Sbjct: 352 DVTEEEKKQRLYLLQQRINNQAAQFSRAMLGTEQRVLVEGPSKKDIMELTGRTETNRIVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                + IG  + ++ITDV  ++L GE+V
Sbjct: 412 FAGTPNMIGKFVDIKITDVYTNSLRGEVV 440


>gi|260461993|ref|ZP_05810238.1| RNA modification enzyme, MiaB family [Mesorhizobium opportunistum
           WSM2075]
 gi|259032240|gb|EEW33506.1| RNA modification enzyme, MiaB family [Mesorhizobium opportunistum
           WSM2075]
          Length = 473

 Score =  499 bits (1285), Expect = e-139,   Method: Composition-based stats.
 Identities = 275/451 (60%), Positives = 341/451 (75%), Gaps = 4/451 (0%)

Query: 21  CIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKV 80
            +  ++ F+K+YGCQMNVYDS RM D   + GY    ++ +ADL++LNTCHIREKAAEKV
Sbjct: 22  AVAAKKVFIKTYGCQMNVYDSQRMADALAADGYTATGAIGEADLVLLNTCHIREKAAEKV 81

Query: 81  YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140
           YS LGRIR++K  R   G +LL+ VAGCVAQAEG EI+RRSP V++V+GPQTY+RLP++L
Sbjct: 82  YSELGRIRDMKAERASVGRELLIGVAGCVAQAEGAEIIRRSPAVDLVIGPQTYHRLPDVL 141

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
            R R G+++V+TDY++EDKFE L         KRGVTAFLT+QEGCDKFCTFCVVPYTRG
Sbjct: 142 ARVRGGEKIVETDYAIEDKFEHLPQPKRAEVIKRGVTAFLTVQEGCDKFCTFCVVPYTRG 201

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG----KGLDGEKCTFSDLLYSLSE 256
            E+SR ++Q+V EA +L + GV E+TLLGQNVNAW G    KG   E+     LL+ L++
Sbjct: 202 SEVSRPVAQIVAEAERLAEAGVREVTLLGQNVNAWHGQGDTKGGRTEEWGLGRLLHRLAQ 261

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           I GL RLRYTTSHPRDM D LI AH DL  LMPYLHLPVQSGSDRILK+MNRRHTA +Y 
Sbjct: 262 IPGLARLRYTTSHPRDMDDELIAAHRDLPSLMPYLHLPVQSGSDRILKAMNRRHTARDYL 321

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
            ++DRIR+ RPDIA+S DFIVGFPGET+ DF ATM+LV ++ YA AFSFKYSPR GTPG+
Sbjct: 322 ALLDRIRAARPDIALSGDFIVGFPGETEADFEATMELVRQVNYASAFSFKYSPRPGTPGA 381

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQ 436
            M + V E VK ERL  LQ  L +QQ  F  + +G  I+ LIEK G++ G+ VGRSPWLQ
Sbjct: 382 EMADHVPETVKDERLQRLQALLLKQQQDFGLSLIGSTIDTLIEKPGRQSGQKVGRSPWLQ 441

Query: 437 SVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
            V+++ K   IGDII+VRIT    ++L+ EL
Sbjct: 442 PVIVDEKAGEIGDIIQVRITKTGYNSLFAEL 472


>gi|229890681|sp|B7KVE0|MIAB_METC4 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
          Length = 446

 Score =  499 bits (1285), Expect = e-139,   Method: Composition-based stats.
 Identities = 253/440 (57%), Positives = 328/440 (74%), Gaps = 6/440 (1%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ +VKSYGCQMN YD+ RM D+  ++GY   +++++AD++VLNTCHIREKAAEKVYS L
Sbjct: 2   KKAYVKSYGCQMNAYDAGRMADVLAAEGYSATDTVEEADVVVLNTCHIREKAAEKVYSEL 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR+R LK  R + G +  +VVAGCVAQAEG EIL R+P V+VVVGPQ+Y+RLP+LL ++R
Sbjct: 62  GRLRVLKGDRAESGQETRIVVAGCVAQAEGREILSRAPAVDVVVGPQSYHRLPDLLRQSR 121

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
              RVVDT++  EDKF+ L        R RGVT FLT+QEGCDKFC FCVVPYTRG E+S
Sbjct: 122 E-TRVVDTEFPAEDKFDHLP-----ARRNRGVTGFLTVQEGCDKFCAFCVVPYTRGAEVS 175

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           RS++ VV+EAR+L++ GV EITL+GQNVNA+ G G DG   T   L+ +LS + GL+RLR
Sbjct: 176 RSVAAVVEEARRLVEGGVREITLIGQNVNAYHGDGPDGAPATLGQLMDALSAVPGLLRLR 235

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           YTTSHP D +D LI AH    ++MPYLHLPVQSGSDRIL +MNRRHT   YR++I+RIR+
Sbjct: 236 YTTSHPNDFADDLIAAHATNPLVMPYLHLPVQSGSDRILHAMNRRHTGDAYRRLIERIRN 295

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
            RPDIA+SSDFIVGFPGETD DF  T+ LV  IG++ AFSFKYSPR GTP +   + V E
Sbjct: 296 ARPDIALSSDFIVGFPGETDADFAETLRLVSDIGFSAAFSFKYSPRAGTPAAEREDAVPE 355

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
            VK ERL  LQ  L  Q+ ++N A VG + E+L+EK G+  G++ G++P LQ+V  ++  
Sbjct: 356 AVKTERLAALQDLLDRQRHAYNAASVGTLTEILVEKTGRHPGQVAGKTPHLQAVQFDAPA 415

Query: 445 HNIGDIIKVRITDVKISTLY 464
             IG ++ VRIT    ++L+
Sbjct: 416 STIGTVVPVRITRAGSNSLF 435


>gi|89053188|ref|YP_508639.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Jannaschia sp.
           CCS1]
 gi|122999629|sp|Q28UJ8|MIAB_JANSC RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|88862737|gb|ABD53614.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Jannaschia sp. CCS1]
          Length = 462

 Score =  499 bits (1285), Expect = e-139,   Method: Composition-based stats.
 Identities = 247/446 (55%), Positives = 327/446 (73%), Gaps = 9/446 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + ++ FVK+YGCQMNVYDS RM +    +GYE+VN+ + AD+I+LNTCHIREKAAEK+YS
Sbjct: 26  MTKKLFVKTYGCQMNVYDSERMAEALGGEGYEQVNTPEGADMILLNTCHIREKAAEKMYS 85

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            LGR+R L+++      DL + VAGCVAQAEGEEI+RR P+V++VVGPQTY+RLP+++E 
Sbjct: 86  ELGRLRPLRDA----NPDLKIGVAGCVAQAEGEEIMRRQPLVDLVVGPQTYHRLPKMMEA 141

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
              G++ +DTD+  EDKF  L          RG TAFLT+QEGCDKFC FCVVPYTRG E
Sbjct: 142 VNAGEKALDTDFPEEDKFLNLPKARA----TRGPTAFLTVQEGCDKFCAFCVVPYTRGAE 197

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SRS  +++ EAR L+D GV EITLLGQNVNA+ G G DG     + L+  +++I GL R
Sbjct: 198 VSRSAERLMAEARDLVDRGVREITLLGQNVNAYHGAG-DGGTWGLARLIREMAKIDGLDR 256

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP DM D LI AHGD   LMPYLHLPVQ+GSD+ILK+MNR+HTA +Y ++IDRI
Sbjct: 257 IRFTTSHPNDMEDDLIAAHGDCPELMPYLHLPVQAGSDKILKAMNRKHTAADYIRLIDRI 316

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R  RPD+ +S DFIVGFPGET++DF+AT+DLV+ +GY  A+SFKYS R GTP +    QV
Sbjct: 317 RDARPDLHLSGDFIVGFPGETEEDFQATLDLVETVGYGTAYSFKYSARPGTPAAERTGQV 376

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
            E   ++RL  LQ  L +QQ +  DA VG+ ++VL EK G+  G+++G+S +L SV ++ 
Sbjct: 377 SEAEASDRLQRLQALLTQQQRAAQDAMVGRRVKVLFEKPGRNPGQMIGKSEYLHSVHVDG 436

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
            +   G I +V I + K ++L G LV
Sbjct: 437 PDTLRGQIAEVEIAESKTNSLTGRLV 462


>gi|222112105|ref|YP_002554369.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Acidovorax
           ebreus TPSY]
 gi|221731549|gb|ACM34369.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Acidovorax ebreus TPSY]
          Length = 448

 Score =  499 bits (1285), Expect = e-139,   Method: Composition-based stats.
 Identities = 204/451 (45%), Positives = 292/451 (64%), Gaps = 15/451 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++ F+K++GCQMN YDS +M D+   +QGYE  +  + ADLI+ NTC +REKA EKV+
Sbjct: 1   MSKKVFIKTFGCQMNEYDSDKMADVLGAAQGYEPTDDPEQADLILFNTCSVREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S LGR+++LK+        +L+ V GCVA  EGEEI++R+P V+VV GPQT +RLP+LL 
Sbjct: 61  SDLGRVKHLKDK------GVLIGVGGCVASQEGEEIIKRAPFVDVVFGPQTLHRLPDLLN 114

Query: 142 -RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
            RA   +  VD  +   +KF+ L        R  G +AF++I EGC K+C++CVVPYTRG
Sbjct: 115 ARAAKARPQVDISFPEIEKFDHLPPA-----RVEGASAFVSIMEGCSKYCSYCVVPYTRG 169

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG-EKCTFSDLLYSLSEIKG 259
            E+SR    V+ E   L D GV E+TLLGQNVNA+ G   D  EK  F+ LL  ++EI G
Sbjct: 170 EEVSRPFEDVLVEVAGLADQGVREVTLLGQNVNAYLGAMGDTAEKADFALLLEYVAEIPG 229

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           + R+R+TTSHP + +  LI+A+  +  L+ +LHLPVQ GSDRIL +M R +TA EY+  I
Sbjct: 230 IERIRFTTSHPNEFTPRLIEAYAKIPKLVSHLHLPVQHGSDRILMAMKRGYTAMEYKSTI 289

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            ++R++RPD+A+SSDFIVGFPGET++DF+  M L+D + +  +FSF +SPR GTP +N+ 
Sbjct: 290 RKLRAIRPDMAMSSDFIVGFPGETEEDFQKMMKLIDDVRFDNSFSFIFSPRPGTPAANLH 349

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLVGRSPWLQSV 438
           +     VK  RL  LQ  +    +  +   VG +  +L+E   K  G +L+GR+   + V
Sbjct: 350 DDTPHEVKLRRLQELQAVINRNILEISQERVGTVQRLLVEGVSKRDGSELMGRTECNRVV 409

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
                   IG +I V+IT+ +  TL GE+V 
Sbjct: 410 NFPGHERLIGQMIDVKITEARTYTLRGEVVT 440


>gi|308050552|ref|YP_003914118.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Ferrimonas balearica DSM
           9799]
 gi|307632742|gb|ADN77044.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Ferrimonas balearica DSM
           9799]
          Length = 476

 Score =  499 bits (1284), Expect = e-139,   Method: Composition-based stats.
 Identities = 211/449 (46%), Positives = 294/449 (65%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++  +K++GCQMN YDS +M D+  +  GY      ++AD+++LNTC IREKA EKV+
Sbjct: 1   MSKKLHIKTWGCQMNEYDSAKMADLLDAFGGYTLTEEAEEADVLLLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR R LK         L++ V GCVA  EG+ I  R+P V++V GPQT +RLPE++ 
Sbjct: 61  HQLGRWRPLKEQ----NPALVIGVGGCVASQEGDAIRERAPYVDIVFGPQTLHRLPEMIG 116

Query: 142 RARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           + + G++ VVD  +   +KF+RL        R  G TAF++I EGC+K+C+FCVVPYTRG
Sbjct: 117 KIQAGEKGVVDVSFPEIEKFDRLP-----EPRAEGATAFVSIMEGCNKYCSFCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR L  V+ E  +L + GV EI LLGQNVNA+RG+  DGE C FSDLL  ++ I G+
Sbjct: 172 EEVSRPLDDVLYEIAQLAEQGVREINLLGQNVNAYRGETHDGEICRFSDLLRYVAAIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            RLRYTTSHP + +  +I A+ D+  L+ +LHLPVQSGSDRIL  M R HTA E++ II 
Sbjct: 232 DRLRYTTSHPVEFTQDIIDAYADVPELVDFLHLPVQSGSDRILTMMKRNHTALEFKSIIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           R+R VRP+I ISSDFIVGFP ETD+DF  TM L+  I + Q+FSF YSPR GTP ++M++
Sbjct: 292 RLRKVRPNIHISSDFIVGFPNETDEDFEDTMKLIADIEFDQSFSFIYSPRPGTPAADMVD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLVGRSPWLQSVV 439
            V E  K +RL  LQ ++ +Q + F+   +G +  +L+E   K+   +L GR+   + V 
Sbjct: 352 DVSEETKKQRLYILQDRINQQAMQFSRRMLGTVQRILVEGVSKKNAMELRGRTENNRVVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
            +     IG  + V IT+V   +L G L+
Sbjct: 412 FDGDVELIGGFVDVEITEVLPHSLRGTLI 440


>gi|121595917|ref|YP_987813.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Acidovorax sp.
           JS42]
 gi|229890416|sp|A1WBW2|MIAB_ACISJ RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|120607997|gb|ABM43737.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Acidovorax sp. JS42]
          Length = 448

 Score =  499 bits (1284), Expect = e-139,   Method: Composition-based stats.
 Identities = 205/451 (45%), Positives = 293/451 (64%), Gaps = 15/451 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++ F+K++GCQMN YDS +M D+   +QGYE  +  + ADLI+ NTC +REKA EKV+
Sbjct: 1   MSKKVFIKTFGCQMNEYDSDKMADVLGAAQGYEPTDDPEQADLILFNTCSVREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S LGR+++LK+        +L+ V GCVA  EGEEI++R+P V+VV GPQT +RLPELL 
Sbjct: 61  SDLGRVKHLKDK------GVLIGVGGCVASQEGEEIIKRAPFVDVVFGPQTLHRLPELLN 114

Query: 142 -RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
            RA   +  VD  +   +KF+ L        R  G +AF++I EGC K+C++CVVPYTRG
Sbjct: 115 ARAAKARPQVDISFPEIEKFDHLPPA-----RVEGASAFVSIMEGCSKYCSYCVVPYTRG 169

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG-EKCTFSDLLYSLSEIKG 259
            E+SR    V+ E   L D GV E+TLLGQNVNA+ G   D  EK  F+ LL  ++EI G
Sbjct: 170 EEVSRPFEDVLVEVAGLADQGVKEVTLLGQNVNAYLGAMGDTAEKADFALLLEYVAEIPG 229

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           + R+R+TTSHP + +  LI+A+  +  L+ +LHLPVQ GSDRIL +M R +TA EY+  I
Sbjct: 230 IERIRFTTSHPNEFTPRLIEAYAKIPKLVSHLHLPVQHGSDRILMAMKRGYTAMEYKSTI 289

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            ++R++RPD+A+SSDFIVGFPGET++DF+  M L+D + +  +FSF +SPR GTP +N+ 
Sbjct: 290 RKLRAIRPDMAMSSDFIVGFPGETEEDFQKMMKLIDDVRFDNSFSFIFSPRPGTPAANLH 349

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLVGRSPWLQSV 438
           +     VK  RL  LQ  +    +  +   VG +  +L+E   K  G +L+GR+   + V
Sbjct: 350 DDTPHEVKLRRLQELQAVINRNILEISQERVGTVQRLLVEGVSKRDGSELMGRTECNRVV 409

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
                   IG +I V+IT+ +  TL GE+V+
Sbjct: 410 NFPGHERLIGQMIDVKITEARTYTLRGEVVM 440


>gi|330828617|ref|YP_004391569.1| tRNA methylthiotransferase [Aeromonas veronii B565]
 gi|328803753|gb|AEB48952.1| tRNA methylthiotransferase [Aeromonas veronii B565]
          Length = 477

 Score =  498 bits (1283), Expect = e-139,   Method: Composition-based stats.
 Identities = 201/449 (44%), Positives = 286/449 (63%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++  +K++GCQMN YDS +M D+   S GY      ++AD+++LNTC IREKA EKV+
Sbjct: 1   MSKKLHIKTWGCQMNEYDSSKMADLLDASNGYTLTEEPEEADVLLLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR + LK +       L++ V GCVA  EG+ I +R+P V++V GPQT +RLP +++
Sbjct: 61  HQLGRWKKLKAN----KPGLVIGVGGCVASQEGDAIRQRAPYVDIVFGPQTLHRLPAMIK 116

Query: 142 RARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
             + G+   VD  +   +KF+ L        R  G TAF++I EGC K+CT+CVVPYTRG
Sbjct: 117 EVQEGRGAQVDIAFPEIEKFDSLP-----EPRAEGATAFVSIMEGCSKYCTYCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR L  V+ E  +L   GV E+ LLGQNVNA+RG   DG  CTF++LL  ++ I G+
Sbjct: 172 EEVSRPLDDVLYEIAQLAQQGVREVNLLGQNVNAYRGPTFDGGICTFAELLRLVAAIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+RYTTSHP + +D +I+ + D   ++ +LHLPVQSGSDRIL  M R HT  EY+  I 
Sbjct: 232 DRIRYTTSHPIEFTDDIIEVYKDTPEVVSFLHLPVQSGSDRILTMMKRPHTILEYKSKIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           R+R+ RPDI ISSDFIVGFP ETD+DF ATM L++ +G+  +FSF +SPR GTP ++M +
Sbjct: 292 RLRAARPDITISSDFIVGFPNETDEDFEATMKLIEDVGFDMSFSFIFSPRPGTPAADMPD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVV 439
            VD  VK  RL  LQ  +  Q +    A +G    +L+E   K +  +L GR+   + V 
Sbjct: 352 DVDMEVKKARLARLQHVINNQAMQIGRAMLGTTQRILVEGPSKLDPMQLCGRTENNRVVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
              ++  IG    V IT+V+ ++L G+ +
Sbjct: 412 FEGQHTLIGGFADVEITEVRPNSLRGKFI 440


>gi|332281803|ref|ZP_08394216.1| MiaB protein [Shigella sp. D9]
 gi|332104155|gb|EGJ07501.1| MiaB protein [Shigella sp. D9]
          Length = 486

 Score =  498 bits (1283), Expect = e-139,   Method: Composition-based stats.
 Identities = 197/449 (43%), Positives = 291/449 (64%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++  +K++GCQMN YDS +M D+  +  GY+  +  ++AD+++LNTC IREKA EKV+
Sbjct: 13  MTKKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTDVAEEADVLLLNTCSIREKAQEKVF 72

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR + LK        DL++ V GCVA  EGE I +R+  V+++ GPQT +RLPE++ 
Sbjct: 73  HQLGRWKLLKEK----NPDLIIGVGGCVASQEGEHIRQRAHYVDIIFGPQTLHRLPEMIN 128

Query: 142 RARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
             R  +  VVD  +   +KF+RL        R  G TAF++I EGC+K+CT+CVVPYTRG
Sbjct: 129 SVRGDRSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTYCVVPYTRG 183

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR    ++ E  +L   GV E+ LLGQNVNAWRG+  DG   +F+DLL  ++ I G+
Sbjct: 184 EEVSRPSDDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTTGSFADLLRLVAAIDGI 243

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+TTSHP + +D +I+ + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II 
Sbjct: 244 DRIRFTTSHPIEFTDDIIEVYRDTPELVSFLHLPVQSGSDRILNLMGRTHTALEYKAIIR 303

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R+ RPDI ISSDFIVGFPGET +DF  TM L+  + +  ++SF +S R GTP ++M++
Sbjct: 304 KLRAARPDIQISSDFIVGFPGETTEDFEKTMKLIADVNFDMSYSFIFSARPGTPAADMVD 363

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439
            V E  K +RL  LQ+++ +Q ++++   +G    +L+E   ++   +L GR+   + V 
Sbjct: 364 DVPEEEKKQRLYILQERINQQAMAWSRRMLGTTQRILVEGTSRKSIMELSGRTENNRVVN 423

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG  + V ITDV  ++L G++V
Sbjct: 424 FEGTPDMIGKFVDVEITDVYPNSLRGKVV 452


>gi|117619554|ref|YP_857732.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
 gi|229890492|sp|A0KN81|MIAB_AERHH RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|117560961|gb|ABK37909.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
          Length = 477

 Score =  498 bits (1283), Expect = e-139,   Method: Composition-based stats.
 Identities = 201/449 (44%), Positives = 285/449 (63%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++  +K++GCQMN YDS +M D+   S GY      ++AD+++LNTC IREKA EKV+
Sbjct: 1   MSKKLHIKTWGCQMNEYDSSKMADLLDASNGYTLTEEPEEADVLLLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR + LK +       L++ V GCVA  EG+ I  R+P V++V GPQT +RLP +++
Sbjct: 61  HQLGRWKKLKAN----KPGLVIGVGGCVASQEGDNIRTRAPYVDIVFGPQTLHRLPTMIK 116

Query: 142 RARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           + + G+   VD  +   +KF+ L        R  G TAF++I EGC K+C+FCVVPYTRG
Sbjct: 117 QVQEGRGAQVDVAFPEIEKFDSLP-----EPRAEGATAFVSIMEGCSKYCSFCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR L  V+ E  +L   GV E+ LLGQNVNA+RG   DG  CTF++LL  ++ I G+
Sbjct: 172 EEVSRPLDDVLYEIAQLAQQGVREVNLLGQNVNAYRGPTFDGGICTFAELLRLVAAIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+RYTTSHP + +D +I+ + D   ++ +LHLPVQSGSDRIL  M R HT  EY+  I 
Sbjct: 232 DRIRYTTSHPIEFTDDIIEVYKDTPEVVSFLHLPVQSGSDRILTMMKRPHTVLEYKSKIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           R+R+ RPDI ISSDFIVGFP ETD+DF ATM L+++I +  +FSF YSPR GTP +++ +
Sbjct: 292 RLRAARPDITISSDFIVGFPNETDEDFEATMKLIEEINFDMSFSFIYSPRPGTPAADLPD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVV 439
            VD  VK  RL  LQ  +  Q +    A +G    +L+E   K +  +L GR+   + V 
Sbjct: 352 DVDMEVKKARLTRLQHVINNQSMQIGRAMLGSTQRILVEGPSKLDPMQLCGRTENNRVVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
               +  IG    V IT+V+ ++L G+ +
Sbjct: 412 FEGPHTLIGGFADVEITEVRPNSLRGKFL 440


>gi|319405110|emb|CBI78714.1| bifunctional enzyme [Bartonella sp. AR 15-3]
          Length = 460

 Score =  498 bits (1282), Expect = e-139,   Method: Composition-based stats.
 Identities = 264/443 (59%), Positives = 341/443 (76%), Gaps = 2/443 (0%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P++ F+K+YGCQMNVYDS RM D   +QGY    + +DADLI++NTCHIREKAAEK+YS 
Sbjct: 15  PKKVFIKTYGCQMNVYDSQRMNDSLSTQGYIATQTPNDADLILINTCHIREKAAEKLYSD 74

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR++ ++  R  +   L++ V GCVAQAEG EILRR+P V+ ++GPQ Y+RLPELL++ 
Sbjct: 75  LGRLQIIRQGRTHDKP-LMIGVTGCVAQAEGNEILRRAPTVDFIIGPQMYHRLPELLKQV 133

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           + GK+VV+TDY+VEDKF +L   +    ++RG++AFLT+QEGCDKFCTFCVVPYTRG EI
Sbjct: 134 KQGKKVVETDYAVEDKFTQLPPHNKRAVQQRGISAFLTVQEGCDKFCTFCVVPYTRGAEI 193

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SRS+ Q+ DEAR+LI+ GV EITLLGQNVNAWRG+ +DG+     DLL+ L++I GL RL
Sbjct: 194 SRSVKQITDEARQLIEAGVKEITLLGQNVNAWRGQSIDGKTWRLGDLLHHLAKIDGLKRL 253

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           RYTTSHPRDM D LI AH DLD+LMPYLHLPVQSGSDRILK+MNR+H +  Y  +ID+IR
Sbjct: 254 RYTTSHPRDMDDSLIAAHRDLDILMPYLHLPVQSGSDRILKAMNRQHKSIHYLHLIDKIR 313

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           + +PDIA S DFIVGFPGETD+DF  T+ L+ ++GY+ A+SFKYSPR GT G+ M   VD
Sbjct: 314 AAKPDIAFSGDFIVGFPGETDEDFEETIKLIKQVGYSSAYSFKYSPRPGTVGATMKNHVD 373

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
           E VK  RL  LQ  L +QQ +F  + +GQ  +VLIEK G+  G++VGRSPWL  VV+N++
Sbjct: 374 ETVKNTRLQHLQTILLDQQHTFLHSKIGQTTDVLIEKIGRYSGQMVGRSPWLLPVVINTQ 433

Query: 444 NHNIGDIIKVRITDVKISTLYGE 466
              +G I+K+RI D   ++  GE
Sbjct: 434 TS-VGTIMKIRIKDASSNSFVGE 455


>gi|312113950|ref|YP_004011546.1| RNA modification enzyme, MiaB family [Rhodomicrobium vannielii ATCC
           17100]
 gi|311219079|gb|ADP70447.1| RNA modification enzyme, MiaB family [Rhodomicrobium vannielii ATCC
           17100]
          Length = 469

 Score =  498 bits (1282), Expect = e-138,   Method: Composition-based stats.
 Identities = 244/452 (53%), Positives = 323/452 (71%), Gaps = 7/452 (1%)

Query: 18  VDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA 77
                  +R F+K++GCQMNVYDS RM D   + G+    + +DADL++LNTCHIREKAA
Sbjct: 15  PTANAPEKRVFIKTFGCQMNVYDSERMADALGAAGFVETGAPEDADLVILNTCHIREKAA 74

Query: 78  EKVYSFLGRIRNLKNSRIKEGG-DLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL 136
           EKV+S LGR+R L+ +R ++GG +L++ VAGCVAQAEGEEI RR+  V+++VGPQ+Y+RL
Sbjct: 75  EKVFSELGRLRVLREARRQDGGGNLMIAVAGCVAQAEGEEIARRA-AVDIIVGPQSYHRL 133

Query: 137 PELLERARFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
           PEL+ER    +  V++T++   +KF  L         +   +AFLT+QEGCDKFCTFCVV
Sbjct: 134 PELIERRASTRGPVIETEFPAAEKFASLPAP----KLRAAPSAFLTVQEGCDKFCTFCVV 189

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
           PYTRG E SR ++Q+++EA++L + GV EITLLGQNVNAW G+G  G+  T  DLL +LS
Sbjct: 190 PYTRGAEYSRPVAQIIEEAKRLAERGVREITLLGQNVNAWAGEGPSGKTWTLPDLLAALS 249

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
           E+ G+ RLR+TTSHP DMSD LI AH DL  LMPYLHLP QSGSDRILK+MNR+H   +Y
Sbjct: 250 EVNGIARLRFTTSHPNDMSDALIAAHRDLPKLMPYLHLPFQSGSDRILKAMNRKHRMEDY 309

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
            +I+ R+R  RPD+A+S+D IVGFPGETD DF  TM +V+++ +AQA+SFKYSPR GTP 
Sbjct: 310 LRIVHRLRDARPDLALSTDIIVGFPGETDADFEETMRMVERVHFAQAYSFKYSPRPGTPA 369

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWL 435
           ++   QV E+VK+ERL  LQ  L  QQ +FN A VG+ + VL E  G+ +G++VGRSP+L
Sbjct: 370 ADRAAQVPEDVKSERLARLQALLFAQQTAFNAAMVGRTLSVLWESRGRNEGQVVGRSPYL 429

Query: 436 QSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
           Q V        IG I  V I     ++L   +
Sbjct: 430 QPVYAEGDPALIGHIADVEIVAASQNSLRAVI 461


>gi|320638111|gb|EFX07875.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Escherichia
           coli O157:H7 str. G5101]
          Length = 474

 Score =  497 bits (1281), Expect = e-138,   Method: Composition-based stats.
 Identities = 196/449 (43%), Positives = 291/449 (64%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++  +K++GCQMN YDS +M D+  +  GY+  +  ++AD+++LNTC IREKA EKV+
Sbjct: 1   MTKKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTDVAEEADVLLLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR + LK        DL++ V GCVA  EGE I +R+  V+++ GPQT +RLPE++ 
Sbjct: 61  HQLGRWKLLKEK----NPDLIIGVGGCVASQEGEHIRQRAHYVDIIFGPQTLHRLPEMIN 116

Query: 142 RARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
             R  +  VVD  +   +KF+RL        R  G TAF++I EGC+K+CT+CVVPYTRG
Sbjct: 117 SVRGDRSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTYCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR    ++ E  +L   GV E+ LLGQNVNAWRG+  DG   +F+DLL  ++ I G+
Sbjct: 172 EEVSRPSDDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTTGSFADLLRLVAAIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+TTSHP + +D +I+ + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ +I 
Sbjct: 232 DRIRFTTSHPIEFTDDIIEVYRDTPELVSFLHLPVQSGSDRILNLMGRTHTALEYKALIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R+ RPDI ISSDFIVGFPGET +DF  TM L+  + +  ++SF +S R GTP ++M++
Sbjct: 292 KLRAARPDIQISSDFIVGFPGETTEDFEKTMKLIADVNFDMSYSFIFSARPGTPAADMVD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439
            V E  K +RL  LQ+++ +Q ++++   +G    +L+E   ++   +L GR+   + V 
Sbjct: 352 DVPEEEKKQRLYILQERINQQAMAWSRRMLGTTQRILVEGTSRKSIMELSGRTENNRVVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG  + V ITDV  ++L G++V
Sbjct: 412 FEGTPDMIGKFVDVEITDVYPNSLRGKVV 440


>gi|320654434|gb|EFX22481.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Escherichia
           coli O55:H7 str. 3256-97 TW 07815]
          Length = 474

 Score =  497 bits (1281), Expect = e-138,   Method: Composition-based stats.
 Identities = 197/449 (43%), Positives = 291/449 (64%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++  +K++GCQMN YDS +M D+  +  GY+  +  ++AD+++LNTC IREKA EKV+
Sbjct: 1   MTKKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTDVAEEADVLLLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR + LK        DL++ V GCVA  EGE I +R+  V+++ GPQT +RLPE++ 
Sbjct: 61  HQLGRWKLLKEK----NPDLIIGVGGCVASQEGEHIRQRAHYVDIIFGPQTLHRLPEMIN 116

Query: 142 RARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
             R  +  VVD  +   +KF+RL        R  G TAF++I EGC+K+CT+CVVPYTRG
Sbjct: 117 SVRGDRSPVVDISFPEIEKFDRLP-----EPRTEGPTAFVSIMEGCNKYCTYCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR    ++ E  +L   GV E+ LLGQNVNAWRG+  DG   +F+DLL  ++ I G+
Sbjct: 172 EEVSRPSDDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTTGSFADLLRLVAAIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+TTSHP + +D +I+ + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II 
Sbjct: 232 DRIRFTTSHPIEFTDDIIEVYRDTPELVSFLHLPVQSGSDRILNLMGRTHTALEYKAIIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R+ RPDI ISSDFIVGFPGET +DF  TM L+  + +  ++SF +S R GTP ++M++
Sbjct: 292 KLRAARPDIQISSDFIVGFPGETTEDFEKTMKLIADVNFDMSYSFIFSARPGTPAADMVD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439
            V E  K +RL  LQ+++ +Q ++++   +G    +L+E   ++   +L GR+   + V 
Sbjct: 352 DVPEEEKKQRLYILQERINQQAMAWSRRMLGTTQRILVEGTSRKSIMELSGRTENNRVVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG  + V ITDV  ++L G++V
Sbjct: 412 FEGTPDMIGKFVDVEITDVYPNSLRGKVV 440


>gi|218688478|ref|YP_002396690.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Escherichia
           coli ED1a]
 gi|293408786|ref|ZP_06652625.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli B354]
 gi|306812915|ref|ZP_07447108.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Escherichia
           coli NC101]
 gi|331645818|ref|ZP_08346921.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli M605]
 gi|229890523|sp|B7MPH7|MIAB_ECO81 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|218426042|emb|CAR06859.1| isopentenyl-adenosine A37 tRNA methylthiolase [Escherichia coli
           ED1a]
 gi|222032414|emb|CAP75153.1| UPF0004 protein yleA [Escherichia coli LF82]
 gi|291471964|gb|EFF14447.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli B354]
 gi|305853678|gb|EFM54117.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Escherichia
           coli NC101]
 gi|312945201|gb|ADR26028.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Escherichia
           coli O83:H1 str. NRG 857C]
 gi|320194162|gb|EFW68794.1| tRNA-i(6)A37 methylthiotransferase [Escherichia coli WV_060327]
 gi|323191295|gb|EFZ76559.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli RN587/1]
 gi|330910419|gb|EGH38929.1| tRNA-i(6)A37 methylthiotransferase [Escherichia coli AA86]
 gi|331044570|gb|EGI16697.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli M605]
          Length = 474

 Score =  497 bits (1280), Expect = e-138,   Method: Composition-based stats.
 Identities = 198/449 (44%), Positives = 291/449 (64%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++  +K++GCQMN YDS +M D+  +  GY+  +  ++AD+++LNTC IREKA EKV+
Sbjct: 1   MTKKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTDVAEEADVLLLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR + LK        DL++ V GCVA  EGE I +R+  V+++ GPQT +RLPE++ 
Sbjct: 61  HQLGRWKLLKEK----NPDLIIGVGGCVASQEGEHIRQRAHYVDIIFGPQTLHRLPEMIN 116

Query: 142 RARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
             R  +  VVD  +   +KF+RL        R  G TAF++I EGC+K+CT+CVVPYTRG
Sbjct: 117 SVRGDRSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTYCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR    ++ E  +L   GV E+ LLGQNVNAWRG+  DG   TF+DLL  ++ I G+
Sbjct: 172 EEVSRPSDDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTTGTFADLLRLVAAIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+TTSHP + +D +I+ + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II 
Sbjct: 232 DRIRFTTSHPIEFTDDIIEVYRDTPELVSFLHLPVQSGSDRILNLMGRTHTALEYKAIIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R+ RPDI ISSDFIVGFPGET +DF  TM L+  + +  ++SF +S R GTP ++M++
Sbjct: 292 KLRAARPDIQISSDFIVGFPGETTEDFEKTMKLIADVNFDMSYSFIFSARPGTPAADMVD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439
            V E  K +RL  LQ+++ +Q ++++   +G    +L+E   ++   +L GR+   + V 
Sbjct: 352 DVPEEEKKQRLYILQERINQQAMAWSRRMLGTTQRILVEGTSRKSIMELSGRTENNRVVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG  + V ITDV  ++L G++V
Sbjct: 412 FEGTPDMIGKFVDVEITDVYPNSLRGKVV 440


>gi|257465566|ref|ZP_05629937.1| hypothetical protein AM202_03575 [Actinobacillus minor 202]
 gi|257451226|gb|EEV25269.1| hypothetical protein AM202_03575 [Actinobacillus minor 202]
          Length = 475

 Score =  497 bits (1280), Expect = e-138,   Method: Composition-based stats.
 Identities = 207/446 (46%), Positives = 297/446 (66%), Gaps = 12/446 (2%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +  + ++GCQMN YDS +M D+  S  G E  ++ +DAD+++LNTC IREKA EKV+S L
Sbjct: 3   KLHITTWGCQMNEYDSSKMADLLNSTHGLELTDNPEDADVLLLNTCSIREKAQEKVFSQL 62

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR +N K    K+  DL++ V GCVA  EGE I  R+P V++V GPQT +RLPE++ + R
Sbjct: 63  GRWKNWK----KDKPDLIIGVGGCVASQEGEHIRERAPFVDIVFGPQTLHRLPEMINQIR 118

Query: 145 FGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            GK  VVD  +   +KF+RL        R  G TAF++I EGC+K+C+FCVVPYTRG E+
Sbjct: 119 GGKSSVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCSFCVVPYTRGEEV 173

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR +  V+ E  +L   GV E+ LLGQNVNA+RG+  DG+ C+F++LL  ++ I G+ R+
Sbjct: 174 SRPVDDVLFEIAQLAAQGVREVNLLGQNVNAYRGETFDGQICSFAELLRLVAAIDGIDRV 233

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           RYTTSHP + +D +I+ + D   L+ +LHLP+QSGSDR+L  M R HTA EY+ II ++R
Sbjct: 234 RYTTSHPIEFTDDIIEVYKDTPELVSFLHLPIQSGSDRVLTMMKRNHTALEYKAIIRKLR 293

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
             RPDI ISSDFIVGFPGET +DF  TM +++++ +  +FSF YS R GTP +++ + V 
Sbjct: 294 EARPDIQISSDFIVGFPGETAEDFEQTMKVIEQVNFDMSFSFIYSARPGTPAADLPDDVT 353

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNS 442
           E+ K ERL  LQ+++  Q + F+ A +G    +L+E   K+   +L GR+   + V    
Sbjct: 354 EDEKKERLYRLQQRINNQAMQFSRAMLGTEQRILVEGPSKKDIMELTGRTENNRIVNFQG 413

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
               IG  + V+ITDV  ++L G++V
Sbjct: 414 TPDMIGKFVDVKITDVYTNSLRGDVV 439


>gi|56414201|ref|YP_151276.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella
           enterica subsp. enterica serovar Paratyphi A str. ATCC
           9150]
 gi|197363125|ref|YP_002142762.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella
           enterica subsp. enterica serovar Paratyphi A str.
           AKU_12601]
 gi|56128458|gb|AAV77964.1| MiaB protein (putative tRNA-thiotransferase (or
           tRNA-methylthiotransferase)) [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197094602|emb|CAR60123.1| MiaB protein (putative tRNA-thiotransferase (or
           tRNA-methylthiotransferase)) [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
          Length = 488

 Score =  497 bits (1280), Expect = e-138,   Method: Composition-based stats.
 Identities = 199/449 (44%), Positives = 291/449 (64%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++  +K++GCQMN YDS +M D+  +  GY+  +  ++AD+++LNTC IREKA EKV+
Sbjct: 15  MTKKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTDVAEEADVLLLNTCSIREKAQEKVF 74

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR R LK        DL++ V GCVA  EGE I +R+  V+++ GPQT +RLPE++ 
Sbjct: 75  HQLGRWRLLKEK----NPDLIIGVGGCVASQEGEHIRQRAHYVDIIFGPQTSHRLPEMIN 130

Query: 142 RARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
             R  +  VVD  +   +KF+RL        R  G TAF++I EGC+K+CT+CVVPYTRG
Sbjct: 131 SVRGDRSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTYCVVPYTRG 185

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR    ++ E  +L   GV E+ LLGQNVNAWRG+  DG   TF+DLL  ++ I G+
Sbjct: 186 EEVSRPSDDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTTGTFADLLRLVAAIDGI 245

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+TTSHP + +D +I+ + D   L+ +LHLPVQSGSDR+L  M R HTA EY+ II 
Sbjct: 246 DRIRFTTSHPIEFTDDIIEVYRDTPELVSFLHLPVQSGSDRVLNLMGRTHTALEYKAIIR 305

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R+ RPDI ISSDFIVGFPGET DDF  TM L+  + +  ++SF +S R GTP ++M++
Sbjct: 306 KLRAARPDIQISSDFIVGFPGETTDDFEKTMKLIADVNFDMSYSFIFSARPGTPAADMVD 365

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439
            V E  K +RL  LQ+++ +Q ++++   +G    +L+E   ++   +L GR+   + V 
Sbjct: 366 DVPEEEKKQRLYILQERINQQAMAWSRRMLGTTQRILVEGTSRKNIMELSGRTENNRVVN 425

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG  + V ITDV  ++L G++V
Sbjct: 426 FEGTPEMIGKFVDVEITDVYPNSLRGKVV 454


>gi|74311197|ref|YP_309616.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Shigella
           sonnei Ss046]
 gi|82543105|ref|YP_407052.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Shigella
           boydii Sb227]
 gi|123742024|sp|Q324N4|MIAB_SHIBS RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|123746029|sp|Q3Z4D1|MIAB_SHISS RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|73854674|gb|AAZ87381.1| conserved hypothetical protein [Shigella sonnei Ss046]
 gi|81244516|gb|ABB65224.1| conserved hypothetical protein [Shigella boydii Sb227]
 gi|320174711|gb|EFW49843.1| tRNA-i(6)A37 methylthiotransferase [Shigella dysenteriae CDC
           74-1112]
 gi|323163924|gb|EFZ49733.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Shigella sonnei 53G]
 gi|332097757|gb|EGJ02731.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Shigella boydii 3594-74]
          Length = 474

 Score =  497 bits (1280), Expect = e-138,   Method: Composition-based stats.
 Identities = 197/449 (43%), Positives = 291/449 (64%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++  +K++GCQMN YDS +M D+  +  GY+  +  ++AD+++LNTC IREKA EKV+
Sbjct: 1   MTKKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTDVAEEADVLLLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR + LK        DL++ V GCVA  EGE I +R+  V+++ GPQT +RLPE++ 
Sbjct: 61  HQLGRWKLLKEK----NPDLIIGVGGCVASQEGEHIRQRAHYVDIIFGPQTLHRLPEMIN 116

Query: 142 RARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
             R  +  VVD  +   +KF+RL        R  G TAF++I EGC+K+CT+CVVPYTRG
Sbjct: 117 SVRGDRSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTYCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR    ++ E  +L   GV E+ LLGQNVNAWRG+  DG   +F+DLL  ++ I G+
Sbjct: 172 EEVSRPSDDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGSTGSFADLLRLVAAIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+TTSHP + +D +I+ + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II 
Sbjct: 232 DRIRFTTSHPIEFTDDIIEVYRDTPELVSFLHLPVQSGSDRILNLMGRTHTALEYKAIIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R+ RPDI ISSDFIVGFPGET +DF  TM L+  + +  ++SF +S R GTP ++M++
Sbjct: 292 KLRAARPDIQISSDFIVGFPGETTEDFEKTMKLIADVNFDMSYSFIFSARPGTPAADMVD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439
            V E  K +RL  LQ+++ +Q ++++   +G    +L+E   ++   +L GR+   + V 
Sbjct: 352 DVPEEEKKQRLYILQERINQQAMAWSRRMLGTTQRILVEGTSRKSIMELSGRTENNRVVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG  + V ITDV  ++L G++V
Sbjct: 412 FEGTPDMIGKFVDVEITDVYPNSLRGKVV 440


>gi|24112041|ref|NP_706551.1| hypothetical protein SF0621 [Shigella flexneri 2a str. 301]
 gi|30062152|ref|NP_836323.1| hypothetical protein S0643 [Shigella flexneri 2a str. 2457T]
 gi|110804691|ref|YP_688211.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Shigella
           flexneri 5 str. 8401]
 gi|209917923|ref|YP_002292007.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Escherichia
           coli SE11]
 gi|300920521|ref|ZP_07136947.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli MS
           115-1]
 gi|81723658|sp|Q83LY3|MIAB_SHIFL RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|122957570|sp|Q0T6S0|MIAB_SHIF8 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|229890530|sp|B6HYN0|MIAB_ECOSE RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|24050864|gb|AAN42258.1| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301]
 gi|30040397|gb|AAP16129.1| hypothetical protein S0643 [Shigella flexneri 2a str. 2457T]
 gi|110614239|gb|ABF02906.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401]
 gi|209911182|dbj|BAG76256.1| conserved hypothetical protein [Escherichia coli SE11]
 gi|281600005|gb|ADA72989.1| protein yleA [Shigella flexneri 2002017]
 gi|300412460|gb|EFJ95770.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli MS
           115-1]
 gi|313649693|gb|EFS14117.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Shigella flexneri 2a str.
           2457T]
 gi|320198212|gb|EFW72816.1| tRNA-i(6)A37 methylthiotransferase [Escherichia coli EC4100B]
 gi|324016069|gb|EGB85288.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli MS
           117-3]
 gi|332760967|gb|EGJ91255.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Shigella flexneri
           4343-70]
 gi|332761234|gb|EGJ91520.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Shigella flexneri
           2747-71]
 gi|332768235|gb|EGJ98420.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Shigella flexneri
           2930-71]
 gi|333007424|gb|EGK26904.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Shigella flexneri VA-6]
 gi|333007943|gb|EGK27419.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Shigella flexneri K-218]
 gi|333010077|gb|EGK29512.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Shigella flexneri K-272]
 gi|333020908|gb|EGK40168.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Shigella flexneri K-227]
 gi|333021472|gb|EGK40722.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Shigella flexneri K-304]
          Length = 474

 Score =  497 bits (1280), Expect = e-138,   Method: Composition-based stats.
 Identities = 197/449 (43%), Positives = 291/449 (64%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++  +K++GCQMN YDS +M D+  +  GY+  +  ++AD+++LNTC IREKA EKV+
Sbjct: 1   MTKKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTDVAEEADVLLLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR + LK        DL++ V GCVA  EGE I +R+  V+++ GPQT +RLPE++ 
Sbjct: 61  HQLGRWKLLKEK----NPDLIIGVGGCVASQEGEHIRQRAHYVDIIFGPQTLHRLPEMIN 116

Query: 142 RARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
             R  +  VVD  +   +KF+RL        R  G TAF++I EGC+K+CT+CVVPYTRG
Sbjct: 117 SVRGDRSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTYCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR    ++ E  +L   GV E+ LLGQNVNAWRG+  DG   +F+DLL  ++ I G+
Sbjct: 172 EEVSRPSDDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTTGSFADLLRLVAAIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+TTSHP + +D +I+ + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II 
Sbjct: 232 DRIRFTTSHPIEFTDDIIEVYRDTPELVSFLHLPVQSGSDRILNLMGRTHTALEYKAIIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R+ RPDI ISSDFIVGFPGET +DF  TM L+  + +  ++SF +S R GTP ++M++
Sbjct: 292 KLRAARPDIQISSDFIVGFPGETTEDFEKTMKLIADVNFDMSYSFIFSARPGTPAADMVD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439
            V E  K +RL  LQ+++ +Q ++++   +G    +L+E   ++   +L GR+   + V 
Sbjct: 352 DVPEEEKKQRLYILQERINQQAMAWSRRMLGTTQRILVEGTSRKSIMELSGRTENNRVVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG  + V ITDV  ++L G++V
Sbjct: 412 FEGTPDMIGKFVDVEITDVYPNSLRGKVV 440


>gi|316931567|ref|YP_004106549.1| RNA modification enzyme, MiaB family [Rhodopseudomonas palustris
           DX-1]
 gi|315599281|gb|ADU41816.1| RNA modification enzyme, MiaB family [Rhodopseudomonas palustris
           DX-1]
          Length = 463

 Score =  497 bits (1280), Expect = e-138,   Method: Composition-based stats.
 Identities = 236/444 (53%), Positives = 326/444 (73%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P++  +KSYGCQMNVYD+ RM D    +G+    ++DDADL++LNTCHIREKA+EKVYS 
Sbjct: 4   PRKLHIKSYGCQMNVYDAQRMVDALAPEGFVETANVDDADLVILNTCHIREKASEKVYSE 63

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR+R  ++     G  + + VAGCVAQAEGEEI+RR+P+V+VVVGPQ+Y+ LP+LL RA
Sbjct: 64  LGRLRVARDEAASHGRRMQIAVAGCVAQAEGEEIIRRAPVVDVVVGPQSYHNLPQLLARA 123

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
               R ++T++ ++DKF  L        R RG++AF+T+QEGCDKFCTFCVVPYTRG E+
Sbjct: 124 NRDGRALETEFPIDDKFGVLPQPAPDAIRARGISAFVTVQEGCDKFCTFCVVPYTRGAEM 183

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR ++ ++ + ++L D+GV E+TL+GQNVNA+ G G +G   +   L+  L+EI G+VRL
Sbjct: 184 SRPVAAIIADVQRLADHGVREVTLIGQNVNAYHGDGPNGGAWSLGRLVRRLAEIPGIVRL 243

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           RY+TSHP D+ D L+ AH DL  LMP++HLPVQSGSDRIL +MNR+HTA +YR++IDR R
Sbjct: 244 RYSTSHPNDVDDDLLTAHRDLPALMPFVHLPVQSGSDRILAAMNRKHTADDYRRVIDRFR 303

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           +    IA SSDFIVGFPGET+ DF AT+ LV +IGYA A+SFKYSPR GTP + M E V 
Sbjct: 304 AASDAIAFSSDFIVGFPGETERDFSATLALVAQIGYAGAYSFKYSPRPGTPAAEMPEMVP 363

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
             V  ERL  LQ+ + +QQ +FN A +G+ +EVL E+ G++ G++VGR+ +LQ   + + 
Sbjct: 364 AAVMDERLERLQQLIDQQQAAFNKAAIGRTVEVLFERAGRKPGQIVGRTAYLQPAHVMAP 423

Query: 444 NHNIGDIIKVRITDVKISTLYGEL 467
           +  +G ++ VR+  ++  +L GEL
Sbjct: 424 DSIVGQVLPVRVDSLERYSLLGEL 447


>gi|15829953|ref|NP_308726.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Escherichia
           coli O157:H7 str. Sakai]
 gi|16128644|ref|NP_415194.1| tRNA-i(6)A37 methylthiotransferase [Escherichia coli str. K-12
           substr. MG1655]
 gi|26246637|ref|NP_752677.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Escherichia
           coli CFT073]
 gi|82775938|ref|YP_402285.1| hypothetical protein SDY_0597 [Shigella dysenteriae Sd197]
 gi|89107530|ref|AP_001310.1| isopentenyl-adenosine A37 tRNA methylthiolase [Escherichia coli
           str. K-12 substr. W3110]
 gi|110640883|ref|YP_668611.1| MiaB protein [Escherichia coli 536]
 gi|157157673|ref|YP_001461833.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli E24377A]
 gi|157160149|ref|YP_001457467.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli HS]
 gi|168752231|ref|ZP_02777253.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli O157:H7
           str. EC4113]
 gi|168758304|ref|ZP_02783311.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli O157:H7
           str. EC4401]
 gi|168764662|ref|ZP_02789669.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli O157:H7
           str. EC4501]
 gi|168767108|ref|ZP_02792115.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli O157:H7
           str. EC4486]
 gi|168777598|ref|ZP_02802605.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli O157:H7
           str. EC4196]
 gi|168779152|ref|ZP_02804159.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli O157:H7
           str. EC4076]
 gi|168786511|ref|ZP_02811518.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli O157:H7
           str. EC869]
 gi|168802429|ref|ZP_02827436.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli O157:H7
           str. EC508]
 gi|170020982|ref|YP_001725936.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli ATCC
           8739]
 gi|170080341|ref|YP_001729661.1| isopentenyl-adenosine A37 tRNA methylthiolase [Escherichia coli
           str. K-12 substr. DH10B]
 gi|170679912|ref|YP_001742780.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Escherichia
           coli SMS-3-5]
 gi|188492519|ref|ZP_02999789.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli 53638]
 gi|191173977|ref|ZP_03035495.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli F11]
 gi|193063365|ref|ZP_03044455.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli E22]
 gi|193069098|ref|ZP_03050056.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli E110019]
 gi|194429753|ref|ZP_03062269.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli B171]
 gi|194434466|ref|ZP_03066727.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Shigella dysenteriae
           1012]
 gi|194439882|ref|ZP_03071945.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli 101-1]
 gi|195939398|ref|ZP_03084780.1| isopentenyl-adenosine A37 tRNA methylthiolase [Escherichia coli
           O157:H7 str. EC4024]
 gi|208808891|ref|ZP_03251228.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli O157:H7
           str. EC4206]
 gi|208814878|ref|ZP_03256057.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli O157:H7
           str. EC4045]
 gi|208823289|ref|ZP_03263607.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli O157:H7
           str. EC4042]
 gi|209395752|ref|YP_002269297.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli O157:H7
           str. EC4115]
 gi|217324477|ref|ZP_03440561.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli O157:H7
           str. TW14588]
 gi|218549762|ref|YP_002383553.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Escherichia
           fergusonii ATCC 35469]
 gi|218553203|ref|YP_002386116.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Escherichia
           coli IAI1]
 gi|218694100|ref|YP_002401767.1| isopentenyl-adenosine A37 tRNA methylthiolase [Escherichia coli
           55989]
 gi|218699025|ref|YP_002406654.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Escherichia
           coli IAI39]
 gi|218703994|ref|YP_002411513.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Escherichia
           coli UMN026]
 gi|227884364|ref|ZP_04002169.1| 2-methylthioadenine synthase [Escherichia coli 83972]
 gi|238899938|ref|YP_002925734.1| isopentenyl-adenosine A37 tRNA methylthiolase [Escherichia coli
           BW2952]
 gi|253774355|ref|YP_003037186.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Escherichia
           coli 'BL21-Gold(DE3)pLysS AG']
 gi|254160740|ref|YP_003043848.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Escherichia
           coli B str. REL606]
 gi|254791824|ref|YP_003076661.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Escherichia
           coli O157:H7 str. TW14359]
 gi|256020613|ref|ZP_05434478.1| isopentenyl-adenosine A37 tRNA methylthiolase [Shigella sp. D9]
 gi|256023728|ref|ZP_05437593.1| isopentenyl-adenosine A37 tRNA methylthiolase [Escherichia sp.
           4_1_40B]
 gi|260842887|ref|YP_003220665.1| isopentenyl-adenosine A37 tRNA methylthiolase [Escherichia coli
           O103:H2 str. 12009]
 gi|260853912|ref|YP_003227803.1| isopentenyl-adenosine A37 tRNA methylthiolase [Escherichia coli
           O26:H11 str. 11368]
 gi|260866809|ref|YP_003233211.1| isopentenyl-adenosine A37 tRNA methylthiolase [Escherichia coli
           O111:H- str. 11128]
 gi|261224129|ref|ZP_05938410.1| isopentenyl-adenosine A37 tRNA methylthiolase [Escherichia coli
           O157:H7 str. FRIK2000]
 gi|261257823|ref|ZP_05950356.1| isopentenyl-adenosine A37 tRNA methylthiolase [Escherichia coli
           O157:H7 str. FRIK966]
 gi|291281610|ref|YP_003498428.1| hypothetical protein G2583_0824 [Escherichia coli O55:H7 str.
           CB9615]
 gi|293403922|ref|ZP_06647916.1| RNA modification enzyme [Escherichia coli FVEC1412]
 gi|293413956|ref|ZP_06656605.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli B185]
 gi|293418774|ref|ZP_06661209.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli B088]
 gi|298379697|ref|ZP_06989302.1| Dimethylallyl adenosine tRNA methylthiotransferase miaB
           [Escherichia coli FVEC1302]
 gi|300817816|ref|ZP_07098030.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli MS
           107-1]
 gi|300823020|ref|ZP_07103154.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli MS
           119-7]
 gi|300901175|ref|ZP_07119279.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli MS
           198-1]
 gi|300907841|ref|ZP_07125457.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli MS 84-1]
 gi|300931599|ref|ZP_07146911.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli MS
           187-1]
 gi|300937869|ref|ZP_07152662.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli MS 21-1]
 gi|300951164|ref|ZP_07165027.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli MS
           116-1]
 gi|300959238|ref|ZP_07171313.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli MS
           175-1]
 gi|300989977|ref|ZP_07179053.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli MS 45-1]
 gi|300996640|ref|ZP_07181498.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli MS
           200-1]
 gi|301025204|ref|ZP_07188775.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli MS 69-1]
 gi|301028854|ref|ZP_07192030.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli MS
           196-1]
 gi|301049854|ref|ZP_07196792.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli MS
           185-1]
 gi|301302146|ref|ZP_07208279.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli MS
           124-1]
 gi|301643922|ref|ZP_07243949.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli MS
           146-1]
 gi|307137277|ref|ZP_07496633.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Escherichia
           coli H736]
 gi|307312622|ref|ZP_07592254.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli W]
 gi|309786323|ref|ZP_07680949.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Shigella dysenteriae
           1617]
 gi|312970738|ref|ZP_07784919.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli 1827-70]
 gi|331641164|ref|ZP_08342299.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli H736]
 gi|331651675|ref|ZP_08352694.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli M718]
 gi|331662028|ref|ZP_08362951.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli TA143]
 gi|331667016|ref|ZP_08367890.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli TA271]
 gi|331672195|ref|ZP_08372987.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli TA280]
 gi|331676323|ref|ZP_08377035.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli H591]
 gi|331682080|ref|ZP_08382704.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli H299]
 gi|83288201|sp|P0AEI3|MIAB_ECO57 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|83288202|sp|P0AEI2|MIAB_ECOL6 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|83288203|sp|P0AEI1|MIAB_ECOLI RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|123049384|sp|Q0TK19|MIAB_ECOL5 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|123742173|sp|Q32IR1|MIAB_SHIDS RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|229890518|sp|A7ZJ54|MIAB_ECO24 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|229890520|sp|B7L9K8|MIAB_ECO55 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|229890521|sp|B5YQL3|MIAB_ECO5E RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|229890522|sp|B7NM12|MIAB_ECO7I RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|229890524|sp|B7M5I8|MIAB_ECO8A RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|229890525|sp|B1X656|MIAB_ECODH RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|229890526|sp|A7ZXT0|MIAB_ECOHS RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|229890528|sp|B1IYE7|MIAB_ECOLC RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|229890529|sp|B7N9R6|MIAB_ECOLU RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|229890531|sp|B1LLB3|MIAB_ECOSM RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|229890532|sp|B7LKU3|MIAB_ESCF3 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|26107036|gb|AAN79220.1|AE016757_124 Hypothetical protein yleA [Escherichia coli CFT073]
 gi|1778580|gb|AAB40863.1| HI0019 homolog [Escherichia coli]
 gi|1786882|gb|AAC73762.1| tRNA-i(6)A37 methylthiotransferase [Escherichia coli str. K-12
           substr. MG1655]
 gi|13360157|dbj|BAB34122.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
 gi|81240086|gb|ABB60796.1| conserved hypothetical protein [Shigella dysenteriae Sd197]
 gi|85674736|dbj|BAE76357.1| isopentenyl-adenosine A37 tRNA methylthiolase [Escherichia coli
           str. K12 substr. W3110]
 gi|110342475|gb|ABG68712.1| MiaB protein [Escherichia coli 536]
 gi|157065829|gb|ABV05084.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli HS]
 gi|157079703|gb|ABV19411.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli E24377A]
 gi|169755910|gb|ACA78609.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli ATCC
           8739]
 gi|169888176|gb|ACB01883.1| isopentenyl-adenosine A37 tRNA methylthiolase [Escherichia coli
           str. K-12 substr. DH10B]
 gi|170517630|gb|ACB15808.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli SMS-3-5]
 gi|187767200|gb|EDU31044.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli O157:H7
           str. EC4196]
 gi|188013873|gb|EDU51995.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli O157:H7
           str. EC4113]
 gi|188487718|gb|EDU62821.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli 53638]
 gi|189002755|gb|EDU71741.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli O157:H7
           str. EC4076]
 gi|189354844|gb|EDU73263.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli O157:H7
           str. EC4401]
 gi|189363501|gb|EDU81920.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli O157:H7
           str. EC4486]
 gi|189365364|gb|EDU83780.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli O157:H7
           str. EC4501]
 gi|189373737|gb|EDU92153.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli O157:H7
           str. EC869]
 gi|189375569|gb|EDU93985.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli O157:H7
           str. EC508]
 gi|190905753|gb|EDV65374.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli F11]
 gi|192930949|gb|EDV83553.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli E22]
 gi|192957642|gb|EDV88087.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli E110019]
 gi|194412234|gb|EDX28540.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli B171]
 gi|194417317|gb|EDX33425.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Shigella dysenteriae
           1012]
 gi|194421176|gb|EDX37200.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli 101-1]
 gi|208728692|gb|EDZ78293.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli O157:H7
           str. EC4206]
 gi|208731526|gb|EDZ80214.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli O157:H7
           str. EC4045]
 gi|208737482|gb|EDZ85166.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli O157:H7
           str. EC4042]
 gi|209157152|gb|ACI34585.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli O157:H7
           str. EC4115]
 gi|209776858|gb|ACI86741.1| hypothetical protein ECs0699 [Escherichia coli]
 gi|209776860|gb|ACI86742.1| hypothetical protein ECs0699 [Escherichia coli]
 gi|209776862|gb|ACI86743.1| hypothetical protein ECs0699 [Escherichia coli]
 gi|209776864|gb|ACI86744.1| hypothetical protein ECs0699 [Escherichia coli]
 gi|209776866|gb|ACI86745.1| hypothetical protein ECs0699 [Escherichia coli]
 gi|217320698|gb|EEC29122.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli O157:H7
           str. TW14588]
 gi|218350832|emb|CAU96528.1| isopentenyl-adenosine A37 tRNA methylthiolase [Escherichia coli
           55989]
 gi|218357303|emb|CAQ89938.1| isopentenyl-adenosine A37 tRNA methylthiolase [Escherichia
           fergusonii ATCC 35469]
 gi|218359971|emb|CAQ97515.1| isopentenyl-adenosine A37 tRNA methylthiolase [Escherichia coli
           IAI1]
 gi|218369011|emb|CAR16765.1| isopentenyl-adenosine A37 tRNA methylthiolase [Escherichia coli
           IAI39]
 gi|218431091|emb|CAR11967.1| isopentenyl-adenosine A37 tRNA methylthiolase [Escherichia coli
           UMN026]
 gi|227838450|gb|EEJ48916.1| 2-methylthioadenine synthase [Escherichia coli 83972]
 gi|238861566|gb|ACR63564.1| isopentenyl-adenosine A37 tRNA methylthiolase [Escherichia coli
           BW2952]
 gi|242376435|emb|CAQ31137.1| isopentenyl-adenosine A37 tRNA methylthiolase MiaB [Escherichia
           coli BL21(DE3)]
 gi|253325399|gb|ACT30001.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253972641|gb|ACT38312.1| isopentenyl-adenosine A37 tRNA methylthiolase [Escherichia coli B
           str. REL606]
 gi|253976835|gb|ACT42505.1| isopentenyl-adenosine A37 tRNA methylthiolase [Escherichia coli
           BL21(DE3)]
 gi|254591224|gb|ACT70585.1| isopentenyl-adenosine A37 tRNA methylthiolase [Escherichia coli
           O157:H7 str. TW14359]
 gi|257752561|dbj|BAI24063.1| isopentenyl-adenosine A37 tRNA methylthiolase [Escherichia coli
           O26:H11 str. 11368]
 gi|257758034|dbj|BAI29531.1| isopentenyl-adenosine A37 tRNA methylthiolase [Escherichia coli
           O103:H2 str. 12009]
 gi|257763165|dbj|BAI34660.1| isopentenyl-adenosine A37 tRNA methylthiolase [Escherichia coli
           O111:H- str. 11128]
 gi|260450172|gb|ACX40594.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli DH1]
 gi|284920461|emb|CBG33522.1| isopentenyl-adenosine A37 tRNA methylthiolase [Escherichia coli
           042]
 gi|290761483|gb|ADD55444.1| UPF0004 protein yleA [Escherichia coli O55:H7 str. CB9615]
 gi|291325302|gb|EFE64717.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli B088]
 gi|291428508|gb|EFF01533.1| RNA modification enzyme [Escherichia coli FVEC1412]
 gi|291434014|gb|EFF06987.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli B185]
 gi|298279395|gb|EFI20903.1| Dimethylallyl adenosine tRNA methylthiotransferase miaB
           [Escherichia coli FVEC1302]
 gi|299878159|gb|EFI86370.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli MS
           196-1]
 gi|300298388|gb|EFJ54773.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli MS
           185-1]
 gi|300304469|gb|EFJ58989.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli MS
           200-1]
 gi|300314167|gb|EFJ63951.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli MS
           175-1]
 gi|300355389|gb|EFJ71259.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli MS
           198-1]
 gi|300396156|gb|EFJ79694.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli MS 69-1]
 gi|300400473|gb|EFJ84011.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli MS 84-1]
 gi|300407252|gb|EFJ90790.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli MS 45-1]
 gi|300449567|gb|EFK13187.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli MS
           116-1]
 gi|300457112|gb|EFK20605.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli MS 21-1]
 gi|300460623|gb|EFK24116.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli MS
           187-1]
 gi|300524369|gb|EFK45438.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli MS
           119-7]
 gi|300529513|gb|EFK50575.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli MS
           107-1]
 gi|300842698|gb|EFK70458.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli MS
           124-1]
 gi|301077692|gb|EFK92498.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli MS
           146-1]
 gi|306907324|gb|EFN37829.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli W]
 gi|307552525|gb|ADN45300.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli ABU
           83972]
 gi|308925717|gb|EFP71198.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Shigella dysenteriae
           1617]
 gi|309700899|emb|CBJ00196.1| isopentenyl-adenosine A37 tRNA methylthiolase [Escherichia coli
           ETEC H10407]
 gi|310337387|gb|EFQ02525.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli 1827-70]
 gi|315059915|gb|ADT74242.1| isopentenyl-adenosine A37 tRNA methylthiolase [Escherichia coli W]
 gi|315135327|dbj|BAJ42486.1| hypothetical protein ECDH1ME8569_0630 [Escherichia coli DH1]
 gi|315255031|gb|EFU34999.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli MS 85-1]
 gi|315292085|gb|EFU51437.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli MS
           153-1]
 gi|315616417|gb|EFU97034.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli 3431]
 gi|320193067|gb|EFW67707.1| tRNA-i(6)A37 methylthiotransferase [Escherichia coli O157:H7 str.
           EC1212]
 gi|320643515|gb|EFX12685.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Escherichia
           coli O157:H- str. 493-89]
 gi|320648850|gb|EFX17477.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Escherichia
           coli O157:H- str. H 2687]
 gi|320660116|gb|EFX27646.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Escherichia
           coli O55:H7 str. USDA 5905]
 gi|320664914|gb|EFX32049.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Escherichia
           coli O157:H7 str. LSU-61]
 gi|323153611|gb|EFZ39859.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli EPECa14]
 gi|323158884|gb|EFZ44895.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli E128010]
 gi|323179860|gb|EFZ65417.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli 1180]
 gi|323184984|gb|EFZ70351.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli 1357]
 gi|323379521|gb|ADX51789.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli KO11]
 gi|323938422|gb|EGB34676.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli E1520]
 gi|323943075|gb|EGB39234.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli E482]
 gi|323945136|gb|EGB41198.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli H120]
 gi|323963229|gb|EGB58797.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli H489]
 gi|323967607|gb|EGB63023.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli M863]
 gi|323972115|gb|EGB67329.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli TA007]
 gi|324006281|gb|EGB75500.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli MS 57-2]
 gi|324010389|gb|EGB79608.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli MS 60-1]
 gi|324114782|gb|EGC08750.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia fergusonii
           B253]
 gi|324116735|gb|EGC10650.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli E1167]
 gi|325498160|gb|EGC96019.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Escherichia
           fergusonii ECD227]
 gi|326341412|gb|EGD65204.1| tRNA-i(6)A37 methylthiotransferase [Escherichia coli O157:H7 str.
           1044]
 gi|326345808|gb|EGD69547.1| tRNA-i(6)A37 methylthiotransferase [Escherichia coli O157:H7 str.
           1125]
 gi|327254346|gb|EGE65968.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli STEC_7v]
 gi|331037962|gb|EGI10182.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli H736]
 gi|331049953|gb|EGI22011.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli M718]
 gi|331060450|gb|EGI32414.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli TA143]
 gi|331066240|gb|EGI38124.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli TA271]
 gi|331070662|gb|EGI42025.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli TA280]
 gi|331076381|gb|EGI47663.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli H591]
 gi|331080759|gb|EGI51933.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli H299]
 gi|332094333|gb|EGI99384.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Shigella boydii 5216-82]
          Length = 474

 Score =  497 bits (1280), Expect = e-138,   Method: Composition-based stats.
 Identities = 197/449 (43%), Positives = 291/449 (64%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++  +K++GCQMN YDS +M D+  +  GY+  +  ++AD+++LNTC IREKA EKV+
Sbjct: 1   MTKKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTDVAEEADVLLLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR + LK        DL++ V GCVA  EGE I +R+  V+++ GPQT +RLPE++ 
Sbjct: 61  HQLGRWKLLKEK----NPDLIIGVGGCVASQEGEHIRQRAHYVDIIFGPQTLHRLPEMIN 116

Query: 142 RARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
             R  +  VVD  +   +KF+RL        R  G TAF++I EGC+K+CT+CVVPYTRG
Sbjct: 117 SVRGDRSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTYCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR    ++ E  +L   GV E+ LLGQNVNAWRG+  DG   +F+DLL  ++ I G+
Sbjct: 172 EEVSRPSDDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTTGSFADLLRLVAAIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+TTSHP + +D +I+ + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II 
Sbjct: 232 DRIRFTTSHPIEFTDDIIEVYRDTPELVSFLHLPVQSGSDRILNLMGRTHTALEYKAIIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R+ RPDI ISSDFIVGFPGET +DF  TM L+  + +  ++SF +S R GTP ++M++
Sbjct: 292 KLRAARPDIQISSDFIVGFPGETTEDFEKTMKLIADVNFDMSYSFIFSARPGTPAADMVD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439
            V E  K +RL  LQ+++ +Q ++++   +G    +L+E   ++   +L GR+   + V 
Sbjct: 352 DVPEEEKKQRLYILQERINQQAMAWSRRMLGTTQRILVEGTSRKSIMELSGRTENNRVVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG  + V ITDV  ++L G++V
Sbjct: 412 FEGTPDMIGKFVDVEITDVYPNSLRGKVV 440


>gi|237707370|ref|ZP_04537851.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|226898580|gb|EEH84839.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
          Length = 486

 Score =  497 bits (1279), Expect = e-138,   Method: Composition-based stats.
 Identities = 198/449 (44%), Positives = 291/449 (64%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++  +K++GCQMN YDS +M D+  +  GY+  +  ++AD+++LNTC IREKA EKV+
Sbjct: 13  MTKKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTDVAEEADVLLLNTCSIREKAQEKVF 72

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR + LK        DL++ V GCVA  EGE I +R+  V+++ GPQT +RLPE++ 
Sbjct: 73  HQLGRWKLLKEK----NPDLIIGVGGCVASQEGEHIRQRAHYVDIIFGPQTLHRLPEMIN 128

Query: 142 RARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
             R  +  VVD  +   +KF+RL        R  G TAF++I EGC+K+CT+CVVPYTRG
Sbjct: 129 SVRGDRSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTYCVVPYTRG 183

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR    ++ E  +L   GV E+ LLGQNVNAWRG+  DG   +F+DLL  ++ I G+
Sbjct: 184 EEVSRPSDDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTTGSFADLLRLVAAIDGI 243

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+TTSHP + +D +I+ + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II 
Sbjct: 244 DRIRFTTSHPIEFTDDIIEVYRDTPELVSFLHLPVQSGSDRILNLMGRTHTALEYKAIIR 303

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R+ RPDI ISSDFIVGFPGET DDF  TM L+  + +  ++SF +S R GTP ++M++
Sbjct: 304 KLRAARPDIQISSDFIVGFPGETTDDFEKTMKLIADVNFDMSYSFIFSARPGTPAADMVD 363

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439
            V E  K +RL  LQ+++ +Q ++++   +G    +L+E   ++   +L GR+   + V 
Sbjct: 364 DVPEEEKKQRLYILQERINQQAMAWSRRMLGTTQRILVEGTSRKSIMELSGRTENNRVVN 423

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG  + V ITDV  ++L G++V
Sbjct: 424 FEGTPDMIGKFVDVEITDVYPNSLRGKVV 452


>gi|229890684|sp|Q5FPF1|MIAB_GLUOX RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
          Length = 475

 Score =  497 bits (1279), Expect = e-138,   Method: Composition-based stats.
 Identities = 243/459 (52%), Positives = 319/459 (69%), Gaps = 3/459 (0%)

Query: 12  HMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCH 71
              S        P+   V ++GCQMNVYDS RM D+    GY  V   +DAD+++LNTCH
Sbjct: 11  PASSDTAPTGPAPRGLHVITWGCQMNVYDSARMADVLRPLGYGPVERPEDADMVILNTCH 70

Query: 72  IREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVV-VAGCVAQAEGEEILRRSPIVNVVVGP 130
           IRE+A EKV+S LGR+R +++ R+  G D  ++ VAGCVAQAEGE IL R+P V++V+GP
Sbjct: 71  IRERATEKVFSELGRLRKIRDERMSNGADRTIIAVAGCVAQAEGEVILTRAPYVDLVLGP 130

Query: 131 QTYYRLPELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKF 189
           QTY++LPE++ RA       ++TD+ VE KF+ L   D     +  +TAFLTIQEGCDKF
Sbjct: 131 QTYHKLPEMVARAARAGGAVIETDFPVEQKFDFLP-TDAAPQTQGNLTAFLTIQEGCDKF 189

Query: 190 CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSD 249
           C+FCVVPYTRG E SR ++ V+ EAR++ ++GV EITLLGQNVNA+ G    G   T + 
Sbjct: 190 CSFCVVPYTRGAETSRPVASVLAEARRMAESGVREITLLGQNVNAYHGDDGKGGSETLAG 249

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
           L+  L++I GL R+RY TSHPRD+   LI AH D   LMP+LHLPVQSGSDRILK+MNR 
Sbjct: 250 LVEQLAQIPGLGRIRYMTSHPRDVDQSLIDAHRDNPALMPFLHLPVQSGSDRILKAMNRG 309

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369
           HTA EYR+ + ++R  RPD+A+SSDFIVG PGET++DF ATM LV  IG+A A+SFKYSP
Sbjct: 310 HTADEYRESVRKLREARPDLALSSDFIVGHPGETEEDFEATMQLVRDIGFAMAYSFKYSP 369

Query: 370 RLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV 429
           R GTP +    QV E+VK  RL  LQ  LREQQ +FN   VG + E+L+   G++ G++ 
Sbjct: 370 RPGTPAAGQPMQVPEDVKDRRLAELQALLREQQDAFNADMVGTVQEILVTNRGRKPGQIA 429

Query: 430 GRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           GRSP+LQ V  +  +H IG  +KV IT  + ++L G L+
Sbjct: 430 GRSPYLQPVHFDGPDHLIGSTVKVAITTRRTNSLGGTLI 468


>gi|16759622|ref|NP_455239.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella
           enterica subsp. enterica serovar Typhi str. CT18]
 gi|29142605|ref|NP_805947.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella
           enterica subsp. enterica serovar Typhi str. Ty2]
 gi|62179268|ref|YP_215685.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|161615109|ref|YP_001589074.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella
           enterica subsp. enterica serovar Paratyphi B str. SPB7]
 gi|25305454|pir||AC0584 MiaB protein (probable tRNA-thiotransferase (or
           tRNA-methylthiotransferase)) miaB [imported] -
           Salmonella enterica subsp. enterica serovar Typhi
           (strain CT18)
 gi|16501914|emb|CAD05141.1| MiaB protein (putative tRNA-thiotransferase (or
           tRNA-methylthiotransferase)) [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29138236|gb|AAO69807.1| MiaB protein [Salmonella enterica subsp. enterica serovar Typhi
           str. Ty2]
 gi|62126901|gb|AAX64604.1| methylthiolation of isopentenylated A37 derivatives in rRNA
           [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|161364473|gb|ABX68241.1| hypothetical protein SPAB_02876 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|320084943|emb|CBY94732.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           tRNA-i(6)A37 methylthiotransferase [Salmonella enterica
           subsp. enterica serovar Weltevreden str. 2007-60-3289-1]
 gi|322713735|gb|EFZ05306.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. A50]
          Length = 488

 Score =  497 bits (1279), Expect = e-138,   Method: Composition-based stats.
 Identities = 199/449 (44%), Positives = 291/449 (64%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++  +K++GCQMN YDS +M D+  +  GY+  +  ++AD+++LNTC IREKA EKV+
Sbjct: 15  MTKKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTDVAEEADVLLLNTCSIREKAQEKVF 74

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR R LK        DL++ V GCVA  EGE I +R+  V+++ GPQT +RLPE++ 
Sbjct: 75  HQLGRWRLLKEK----NPDLIIGVGGCVASQEGEHIRQRAHYVDIIFGPQTLHRLPEMIN 130

Query: 142 RARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
             R  +  VVD  +   +KF+RL        R  G TAF++I EGC+K+CT+CVVPYTRG
Sbjct: 131 SVRGDRSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTYCVVPYTRG 185

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR    ++ E  +L   GV E+ LLGQNVNAWRG+  DG   TF+DLL  ++ I G+
Sbjct: 186 EEVSRPSDDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTTGTFADLLRLVAAIDGI 245

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+TTSHP + +D +I+ + D   L+ +LHLPVQSGSDR+L  M R HTA EY+ II 
Sbjct: 246 DRIRFTTSHPIEFTDDIIEVYRDTPELVSFLHLPVQSGSDRVLNLMGRTHTALEYKAIIR 305

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R+ RPDI ISSDFIVGFPGET DDF  TM L+  + +  ++SF +S R GTP ++M++
Sbjct: 306 KLRAARPDIQISSDFIVGFPGETTDDFEKTMKLIADVNFDMSYSFIFSARPGTPAADMVD 365

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439
            V E  K +RL  LQ+++ +Q ++++   +G    +L+E   ++   +L GR+   + V 
Sbjct: 366 DVPEEEKKQRLYILQERINQQAMAWSRRMLGTTQRILVEGTSRKNIMELSGRTENNRVVN 425

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG  + V ITDV  ++L G++V
Sbjct: 426 FEGTPEMIGKFVDVEITDVYPNSLRGKVV 454


>gi|240948129|ref|ZP_04752539.1| hypothetical protein AM305_05003 [Actinobacillus minor NM305]
 gi|240297609|gb|EER48101.1| hypothetical protein AM305_05003 [Actinobacillus minor NM305]
          Length = 475

 Score =  497 bits (1279), Expect = e-138,   Method: Composition-based stats.
 Identities = 206/446 (46%), Positives = 297/446 (66%), Gaps = 12/446 (2%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +  + ++GCQMN YDS +M D+  S  G E  ++ ++AD+++LNTC IREKA EKV+S L
Sbjct: 3   KLHITTWGCQMNEYDSSKMADLLNSTHGLELTDNPEEADVLLLNTCSIREKAQEKVFSQL 62

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR +N K    K+  DL++ V GCVA  EGE I  R+P V++V GPQT +RLPE++ + R
Sbjct: 63  GRWKNWK----KDKPDLIIGVGGCVASQEGEHIRERAPFVDIVFGPQTLHRLPEMINQIR 118

Query: 145 FGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            GK  VVD  +   +KF+RL        R  G TAF++I EGC+K+C+FCVVPYTRG E+
Sbjct: 119 GGKSSVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCSFCVVPYTRGEEV 173

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR +  V+ E  +L   GV E+ LLGQNVNA+RG+  DG+ C+F++LL  ++ I G+ R+
Sbjct: 174 SRPVDDVLFEIAQLAAQGVREVNLLGQNVNAYRGETFDGQICSFAELLRLVAAIDGIDRV 233

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           RYTTSHP + +D +I+ + D   L+ +LHLP+QSGSDR+L  M R HTA EY+ II ++R
Sbjct: 234 RYTTSHPIEFTDDIIEVYKDTPELVSFLHLPIQSGSDRVLTMMKRNHTALEYKAIIRKLR 293

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
             RPDI ISSDFIVGFPGET +DF  TM +++++ +  +FSF YS R GTP +++ + V 
Sbjct: 294 EARPDIQISSDFIVGFPGETAEDFEQTMKIIEQVNFDMSFSFIYSARPGTPAADLPDDVT 353

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNS 442
           E+ K ERL  LQ+++  Q + F+ A +G    +L+E   K+   +L GR+   + V    
Sbjct: 354 EDEKKERLYRLQQRINNQAMQFSRAMLGTEQRILVEGPSKKDIMELTGRTENNRIVNFQG 413

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
               IG  + V+ITDV  ++L G++V
Sbjct: 414 TPDMIGKFVDVKITDVYTNSLRGDVV 439


>gi|319898348|ref|YP_004158441.1| bifunctional enzyme [Bartonella clarridgeiae 73]
 gi|319402312|emb|CBI75851.1| bifunctional enzyme [Bartonella clarridgeiae 73]
          Length = 460

 Score =  496 bits (1278), Expect = e-138,   Method: Composition-based stats.
 Identities = 259/443 (58%), Positives = 334/443 (75%), Gaps = 2/443 (0%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P++ F+K+YGCQMNVYDS RM D   +QGY    + +DADLI++NTCHIREKAAEK+YS 
Sbjct: 15  PKKVFIKTYGCQMNVYDSQRMNDSLSAQGYITTQTPNDADLILINTCHIREKAAEKLYSD 74

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR++ ++  R  +   L++ V GCVAQAEG EILRR+P V+ ++GPQ Y+RLPELL++ 
Sbjct: 75  LGRLQIIRQERTNDKP-LMIGVTGCVAQAEGNEILRRAPTVDFIIGPQMYHRLPELLKQV 133

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             GK+VV+T+Y+VEDKF  L   +    ++RG++AFLT+QEGCDKFCTFCVVPYTRG EI
Sbjct: 134 TQGKKVVETNYAVEDKFTHLPPHNKRAVQQRGISAFLTVQEGCDKFCTFCVVPYTRGAEI 193

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SRS+ Q+ +EA +LI+ GV EITLLGQNVNAW G+ +DG+     DLL+ L++I GL RL
Sbjct: 194 SRSVEQITNEAHQLIEAGVKEITLLGQNVNAWHGQSIDGKTWRLGDLLHHLAKIDGLKRL 253

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           RYTTSHP DM D LI AH DLD+LMPYLHLPVQSGSDRILK+MNR+H +  Y  +ID+IR
Sbjct: 254 RYTTSHPCDMDDSLIAAHRDLDILMPYLHLPVQSGSDRILKAMNRQHKSIHYLHLIDKIR 313

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           + RPDIA S DFIVGFPGETD+DF  T+ L+ ++GY+ A+SFKYS R GT G+ M   VD
Sbjct: 314 AARPDIAFSGDFIVGFPGETDEDFEETIKLIKQVGYSSAYSFKYSSRPGTVGATMKNHVD 373

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
           E VK  RL  LQ  L +QQ  F  + +GQ  +VLIEK G+  G++VGRSPWL  VV+N+ 
Sbjct: 374 ETVKNARLQHLQTVLLDQQHIFLHSKIGQTTDVLIEKIGRHSGQMVGRSPWLLPVVVNT- 432

Query: 444 NHNIGDIIKVRITDVKISTLYGE 466
             ++G IIK+RI +   ++  GE
Sbjct: 433 QASVGTIIKIRIKNASSNSFVGE 455


>gi|320178452|gb|EFW53420.1| tRNA-i(6)A37 methylthiotransferase [Shigella boydii ATCC 9905]
          Length = 474

 Score =  496 bits (1278), Expect = e-138,   Method: Composition-based stats.
 Identities = 197/449 (43%), Positives = 291/449 (64%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++  +K++GCQMN YDS +M D+  +  GY+  +  ++AD+++LNTC IREKA EKV+
Sbjct: 1   MTKKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTDVAEEADVLLLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR + LK        DL++ V GCVA  EGE I +R+  V+++ GPQT +RLPE++ 
Sbjct: 61  HQLGRWKLLKEK----NPDLIIGVGGCVASQEGEHIRQRAHYVDIIFGPQTLHRLPEMIN 116

Query: 142 RARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
             R  +  VVD  +   +KF+RL        R  G TAF++I EGC+K+CT+CVVPYTRG
Sbjct: 117 SVRGDRSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTYCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR    ++ E  +L   GV E+ LLGQNVNAWRG+  DG   +F+DLL  ++ I G+
Sbjct: 172 EEVSRPSDDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTTGSFADLLRLVAAIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+TTSHP + +D +I+ + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II 
Sbjct: 232 DRIRFTTSHPIEFTDDIIEVYRDTPELVSFLHLPVQSGSDRILNLMGRTHTALEYKAIIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R+ RPDI ISSDFIVGFPGET +DF  TM L+  + +  ++SF +S R GTP ++M++
Sbjct: 292 KLRAARPDIQISSDFIVGFPGETTEDFEKTMKLIADVNFDMSYSFIFSARPGTPAADMVD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439
            V E  K +RL  LQ+++ +Q ++++   +G    +L+E   ++   +L GR+   + V 
Sbjct: 352 DVPEEEKKQRLYILQERINQQAMAWSRRMLGTTQRILVEGTSRKSIMELSGRTENNRVVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG  + V ITDV  ++L G++V
Sbjct: 412 FEGTPDMIGKFVDVEITDVYPNSLRGKVV 440


>gi|161504166|ref|YP_001571278.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella
           enterica subsp. arizonae serovar 62:z4,z23:-- str.
           RSK2980]
 gi|160865513|gb|ABX22136.1| hypothetical protein SARI_02272 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 488

 Score =  496 bits (1278), Expect = e-138,   Method: Composition-based stats.
 Identities = 199/449 (44%), Positives = 291/449 (64%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++  +K++GCQMN YDS +M D+  +  GY+  +  ++AD+++LNTC IREKA EKV+
Sbjct: 15  MTKKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTDVAEEADVLLLNTCSIREKAQEKVF 74

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR R LK        DL++ V GCVA  EGE I +R+  V+++ GPQT +RLPE++ 
Sbjct: 75  HQLGRWRLLKEK----NPDLIIGVGGCVASQEGEHIRQRAHYVDIIFGPQTLHRLPEMIN 130

Query: 142 RARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
             R  +  VVD  +   +KF+RL        R  G TAF++I EGC+K+CT+CVVPYTRG
Sbjct: 131 SVRGDRSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTYCVVPYTRG 185

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR    ++ E  +L   GV E+ LLGQNVNAWRG+  DG   TF+DLL  ++ I G+
Sbjct: 186 EEVSRPSDDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTTGTFADLLRLVAAIDGI 245

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+TTSHP + +D +I+ + D   L+ +LHLPVQSGSDR+L  M R HTA EY+ II 
Sbjct: 246 DRIRFTTSHPIEFTDDIIEVYRDTPELVSFLHLPVQSGSDRVLNLMGRTHTALEYKAIIR 305

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R+ RPDI ISSDFIVGFPGET DDF  TM L+  + +  ++SF +S R GTP ++M++
Sbjct: 306 KLRAARPDIQISSDFIVGFPGETSDDFEKTMKLIADVNFDMSYSFIFSARPGTPAADMVD 365

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439
            V E  K +RL  LQ+++ +Q ++++   +G    +L+E   ++   +L GR+   + V 
Sbjct: 366 DVPEEEKKQRLYILQERINQQAMAWSRRMLGSTQRILVEGTSRKNIMELSGRTENNRVVN 425

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG  + V ITDV  ++L G++V
Sbjct: 426 FEGTPEMIGKFVDVEITDVYPNSLRGKVV 454


>gi|220920281|ref|YP_002495582.1| (dimethylallyl)adenosine tRNA methylthiotransferase
           [Methylobacterium nodulans ORS 2060]
 gi|219944887|gb|ACL55279.1| RNA modification enzyme, MiaB family [Methylobacterium nodulans ORS
           2060]
          Length = 447

 Score =  496 bits (1278), Expect = e-138,   Method: Composition-based stats.
 Identities = 252/442 (57%), Positives = 328/442 (74%), Gaps = 6/442 (1%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ FVKSYGCQMNVYD+ RM D+   +G+     +++AD++VLNTCHIREKAAEKVYS L
Sbjct: 2   KKAFVKSYGCQMNVYDAARMVDLLGREGFTETAVIEEADVVVLNTCHIREKAAEKVYSEL 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR+R+LK  R + G +  +VVAGCVAQAEG EI+ R+P V+VVVGPQ+Y+RLP+LL RAR
Sbjct: 62  GRVRDLKGERAEAGRETTIVVAGCVAQAEGREIIHRAPAVDVVVGPQSYHRLPDLLRRAR 121

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
             ++VVDT++ ++DKF+ L        R  GV++FLT+QEGCDKFC FCVVPYTRG E+S
Sbjct: 122 A-EKVVDTEFPIDDKFDHLPP-----RRIAGVSSFLTVQEGCDKFCAFCVVPYTRGAEVS 175

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R +++V+ EA +L   G  E+TL+GQNVNA+ G+G DG   +   LL  L+E+ G+ RLR
Sbjct: 176 RPVAKVLAEAERLAAGGARELTLIGQNVNAYHGEGPDGATWSLGRLLRRLAEVPGIARLR 235

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           YTTSHPRDM D LI AH D   LMPYLHLPVQSGSDR+L +MNR+H A  Y ++IDRIR+
Sbjct: 236 YTTSHPRDMDDDLIAAHRDCPALMPYLHLPVQSGSDRVLAAMNRKHDAETYLRLIDRIRT 295

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
            RPDIA+SSDFIVGFPGETD D  ATM LV ++G+A AFSFKYSPR GTP +   + V E
Sbjct: 296 ARPDIALSSDFIVGFPGETDADHAATMRLVAEVGFASAFSFKYSPRPGTPAAESADAVPE 355

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
            VK ERL  LQ  L EQ  +FN A +G+ +EVL EK G+  G++ G+SP+LQ+V + +  
Sbjct: 356 AVKRERLAELQALLEEQNRAFNRATIGRTVEVLFEKPGRHPGQVAGKSPYLQAVQIEADP 415

Query: 445 HNIGDIIKVRITDVKISTLYGE 466
             IG ++ VR+T    ++L+GE
Sbjct: 416 AVIGTVLPVRLTRPGSNSLFGE 437


>gi|91775006|ref|YP_544762.1| tRNA-i(6)A37 modification enzyme MiaB [Methylobacillus flagellatus
           KT]
 gi|122985599|sp|Q1H3L6|MIAB_METFK RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|91708993|gb|ABE48921.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Methylobacillus
           flagellatus KT]
          Length = 442

 Score =  496 bits (1278), Expect = e-138,   Method: Composition-based stats.
 Identities = 209/449 (46%), Positives = 281/449 (62%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQ-GYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           +P+R F+K++GCQMN YDS RM DM  +  G +  ++ ++AD+I+LNTC +REKA EKV+
Sbjct: 3   LPKRIFIKTFGCQMNEYDSSRMLDMLQAAEGMQTTDNPEEADVILLNTCSVREKAQEKVF 62

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S LGR   LK        DL++ V GCVA  EGE I+ R+P V+VV GPQT +RLP+++E
Sbjct: 63  SHLGRFAPLKEK----NPDLVIGVGGCVASQEGESIVARAPYVDVVFGPQTLHRLPDMIE 118

Query: 142 -RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
            + R G   VD  +   +KF+ L        R  G  AFL+I EGC K+CTFCVVPYTRG
Sbjct: 119 SKRRTGISQVDISFPEVEKFDHLPP-----PRVEGAAAFLSIMEGCSKYCTFCVVPYTRG 173

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR    ++ EA +L + GV EITLLGQNVN +R +  DGE    + L+  L+EI  +
Sbjct: 174 DEVSRPFDDILTEAIQLAEQGVKEITLLGQNVNGYRSETADGEMADLALLIEYLAEIPEI 233

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+RYTTSHP +M+  LI  +  +  L+ +LHLPVQ+GSDR+L +M R +T  +Y+ II 
Sbjct: 234 ERIRYTTSHPNEMTPALIDCYARIPKLVSHLHLPVQAGSDRVLMNMKRNYTVLQYKSIIR 293

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R+ RPDI ISSDFIVGFPGET+ DF ATM L+  +G+  +FSF YSPR GTP S + +
Sbjct: 294 KLRAARPDICISSDFIVGFPGETEQDFEATMKLMRDVGFDFSFSFIYSPRPGTPASYLPD 353

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVV 439
                 K  RL  LQ     Q  + + + VG I  VLIE    K   +L GR+   + V 
Sbjct: 354 DCSPEEKQSRLSRLQALNEAQGKAISASMVGSIQRVLIESVSAKRADELAGRTDNNRIVN 413

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  I   + VRIT+    TL GELV
Sbjct: 414 FPGDTALINQFVNVRITEALSHTLRGELV 442


>gi|167643994|ref|YP_001681657.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Caulobacter
           sp. K31]
 gi|229890472|sp|B0T155|MIAB_CAUSK RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|167346424|gb|ABZ69159.1| RNA modification enzyme, MiaB family [Caulobacter sp. K31]
          Length = 450

 Score =  496 bits (1277), Expect = e-138,   Method: Composition-based stats.
 Identities = 254/445 (57%), Positives = 319/445 (71%), Gaps = 12/445 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +R ++K+YGCQMNVYDS RM D+    GY  V+  + ADL+VLNTCHIREKA EKVYS L
Sbjct: 7   KRLYIKTYGCQMNVYDSERMADVLRPLGYGIVDEPEGADLVVLNTCHIREKATEKVYSEL 66

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           G I+ +K  + + GG + V VAGCVAQAEG+EI+RR P V++VVGPQ Y++LPEL+ RA 
Sbjct: 67  GYIKQMKGRKAEAGGQMTVAVAGCVAQAEGQEIMRRQPAVDLVVGPQAYHQLPELIARAH 126

Query: 145 --FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
              G+R +  D++ ++KF+ L        +  GV+AFLT+QEGCDKFCTFCVVPYTRG E
Sbjct: 127 RATGER-LSADFAADEKFDALP----AERQVSGVSAFLTVQEGCDKFCTFCVVPYTRGGE 181

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR   Q+ DEAR+L D GV E+TLLGQNVNA+     DG   T + L+  L++I GL R
Sbjct: 182 WSRPPEQIEDEARRLADQGVREVTLLGQNVNAY-----DGGGYTLARLVRRLAKIPGLDR 236

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +RYTTSHPRDM D LI+AHG+L  LMPYLHLPVQ+GSD+ILK+MNR HTA  Y ++I++I
Sbjct: 237 IRYTTSHPRDMGDDLIEAHGELPELMPYLHLPVQAGSDKILKAMNRDHTAESYIRLIEKI 296

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R  RPDIA+S DFIVGFPGE D DF  T+DLV ++G+A AFSFKYS R GTP S M  QV
Sbjct: 297 RQARPDIAMSGDFIVGFPGERDGDFEKTLDLVREVGFASAFSFKYSRRPGTPASAMPGQV 356

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
           DE VKAERL  L + L EQQ +FN   VG+ + VL EK G+  G++VGRSP+LQ+V    
Sbjct: 357 DEAVKAERLERLNQLLDEQQKAFNILQVGKTMPVLFEKKGRNPGQIVGRSPYLQAVHAVG 416

Query: 443 KNHNIGDIIKVRITDVKISTLYGEL 467
               +G I+ VRI      +L G L
Sbjct: 417 SEDLLGQIVPVRIESSAKMSLGGVL 441


>gi|325981206|ref|YP_004293608.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Nitrosomonas sp. AL212]
 gi|325530725|gb|ADZ25446.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Nitrosomonas sp. AL212]
          Length = 442

 Score =  496 bits (1277), Expect = e-138,   Method: Composition-based stats.
 Identities = 207/449 (46%), Positives = 293/449 (65%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQ-GYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           +  + ++K++GCQMN YDS +M D+  +  G E  N   +AD+I+ NTC +REKA EKV+
Sbjct: 1   MSNKLYIKTFGCQMNEYDSEKMADVLHAAYGMESTNDPAEADMILFNTCSVREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR+R+LK        DLL+ V GCVA  EG+ I+ R+P V++V GPQT +RLP+L+E
Sbjct: 61  HDLGRVRHLKER----NPDLLIGVGGCVASQEGKAIVSRAPFVDIVFGPQTLHRLPQLIE 116

Query: 142 -RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
            R   G+  VD  +   +KF+ L        R  GVTAF++I EGC K+C+FCVVPYTRG
Sbjct: 117 TRKATGRSQVDISFPEIEKFDHLPPA-----RTEGVTAFVSIMEGCSKYCSFCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR L  V+ E   L   G+ EITLLGQNVNA+ G   DGE   F+ LL  L +I G+
Sbjct: 172 EEVSRPLDDVLTEIAVLAAQGIKEITLLGQNVNAYLGMMNDGEIADFALLLEYLHDIPGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+RYTTSHP++ +  LI+A+  L  L+ +LHLPVQSGSDR+L +M R ++  EY+ II 
Sbjct: 232 ERIRYTTSHPKEFTTRLIQAYNQLPKLVNHLHLPVQSGSDRVLAAMKRGYSVLEYKSIIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R+VRPDI++SSDFIVGFPGET+ DF+AT++LV+++ +  ++SF YSPR GTP +++ +
Sbjct: 292 KVRAVRPDISLSSDFIVGFPGETEVDFQATLNLVEEMNFDDSYSFVYSPRPGTPAADLPD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439
            + +  K ERL  LQ +L  Q    +   VG +  VL+E   K+   +L GR+   + V 
Sbjct: 352 ALPQEEKLERLHRLQAQLSSQSRKISLQMVGTVQRVLLEGTSKKNLDELSGRTDNNRVVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
           L       G  + VRIT+ +  +L GELV
Sbjct: 412 LAGNPELTGRFVNVRITEARAHSLRGELV 440


>gi|146337215|ref|YP_001202263.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bradyrhizobium
           sp. ORS278]
 gi|229890450|sp|A4YJD7|MIAB_BRASO RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|146190021|emb|CAL74013.1| Conserved hypothetical protein; putative MiaB-like tRNA modifying
           enzyme [Bradyrhizobium sp. ORS278]
          Length = 467

 Score =  496 bits (1277), Expect = e-138,   Method: Composition-based stats.
 Identities = 242/446 (54%), Positives = 327/446 (73%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P++  +KSYGCQMNVYD+ RM D   ++G+       DADL++LNTCHIREKA+EKVYS 
Sbjct: 4   PRKLHIKSYGCQMNVYDAQRMVDTLGAEGFVETADAGDADLVILNTCHIREKASEKVYSE 63

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR+R  K    + G  + + VAGCVAQAEG EI+ R+P V+VVVGPQ+Y+ LP+LL +A
Sbjct: 64  LGRLRVAKEEAARSGRAMQIAVAGCVAQAEGVEIISRAPTVDVVVGPQSYHHLPQLLAQA 123

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             G+R ++T++  EDKF  L+       R RGV+AF+T+QEGCDKFCTFCVVPYTRG E+
Sbjct: 124 SRGERAIETEFPAEDKFGFLAKPSREAIRARGVSAFVTVQEGCDKFCTFCVVPYTRGAEM 183

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR ++++VD+  +L D+GV EITL+GQNVNA+ G+G DG   T   LLY ++EI G+ R+
Sbjct: 184 SRPVARIVDDVMQLTDSGVREITLIGQNVNAYHGEGPDGRTWTLGRLLYRIAEIPGVARI 243

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           RY+TSHP D+ D LI AH DL  +MP++HLPVQSGSDRIL +MNR+H+A +YR+++DR R
Sbjct: 244 RYSTSHPNDVDDGLIAAHRDLTAVMPFVHLPVQSGSDRILAAMNRKHSAADYRRVVDRFR 303

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
             R DIA SSDFIVGFPGET++DFRAT+ L+D+IGYA A+SFKYSPR GTP ++M E V 
Sbjct: 304 GARDDIAFSSDFIVGFPGETEEDFRATLALIDQIGYAAAYSFKYSPRPGTPAADMQEMVS 363

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
                ERL  LQ  +  QQ +FN A +G +++VL E+  ++ G+LVGR+ +LQ   + + 
Sbjct: 364 ATEMDERLERLQSLIDSQQAAFNKAAIGSVVDVLFEREARKPGQLVGRTAYLQPAHVMAS 423

Query: 444 NHNIGDIIKVRITDVKISTLYGELVV 469
           +  IG ++ VRI  ++  +L GELV 
Sbjct: 424 SDIIGQVLPVRIDSLERYSLLGELVA 449


>gi|254362260|ref|ZP_04978374.1| 2-methylthioadenine synthase [Mannheimia haemolytica PHL213]
 gi|261496732|ref|ZP_05993107.1| 2-methylthioadenine synthase [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|153093835|gb|EDN74770.1| 2-methylthioadenine synthase [Mannheimia haemolytica PHL213]
 gi|261307571|gb|EEY08899.1| 2-methylthioadenine synthase [Mannheimia haemolytica serotype A2
           str. OVINE]
          Length = 475

 Score =  496 bits (1277), Expect = e-138,   Method: Composition-based stats.
 Identities = 205/446 (45%), Positives = 298/446 (66%), Gaps = 12/446 (2%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +  + ++GCQMN YDS +M D+  S  G+E   + +DAD+++LNTC IREKA EKV+S L
Sbjct: 3   KLHITTWGCQMNEYDSSKMADLLNSTHGFELTENPEDADVLLLNTCSIREKAQEKVFSQL 62

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR +N K    K+  +L++ V GCVA  EGE I  R+P V++V GPQT +RLPE++ + R
Sbjct: 63  GRWKNWK----KDKPNLIIGVGGCVASQEGEHIRDRAPYVDIVFGPQTLHRLPEMINQIR 118

Query: 145 FGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            GK  +VD  +   +KF+RL        +  G TAF++I EGC+K+C+FCVVPYTRG E+
Sbjct: 119 GGKSSIVDISFPEIEKFDRLP-----EPKAEGPTAFVSIMEGCNKYCSFCVVPYTRGEEV 173

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR +  V+ E  +L   GV E+ LLGQNVNA+RG+  DG  CTF++LL  ++ I G+ RL
Sbjct: 174 SRPVDDVLFEIAQLAAQGVREVNLLGQNVNAYRGETFDGGICTFAELLRLVAAIDGIDRL 233

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           RYTTSHP + +D +I+ + D   L+ +LHLP+QSGSDR+L  M R HTA EY+ II ++R
Sbjct: 234 RYTTSHPIEFTDDIIEVYRDTPELVSFLHLPIQSGSDRVLTMMKRNHTALEYKAIIRKLR 293

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           +VRP+I ISSDFIVGFPGET +DF  TM +++++ +  +FSF YS R GTP +++ + V 
Sbjct: 294 AVRPEIQISSDFIVGFPGETAEDFEQTMKVIEQVNFDMSFSFIYSARPGTPAADLPDNVS 353

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNS 442
           ++ K ERL  LQ+++  Q + F+ A +G    +L+E   K+   +L GR+   + V    
Sbjct: 354 DDEKKERLSRLQQRINHQAMQFSRAMLGTEQRILVEGPSKKDLMELTGRTETNRVVNFVG 413

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
               IG  + V+ITDV  ++L GE++
Sbjct: 414 TPDMIGKFVDVKITDVYTNSLRGEVI 439


>gi|215485694|ref|YP_002328125.1| isopentenyl-adenosine A37 tRNA methylthiolase [Escherichia coli
           O127:H6 str. E2348/69]
 gi|312965102|ref|ZP_07779339.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli 2362-75]
 gi|331656683|ref|ZP_08357645.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli TA206]
 gi|215263766|emb|CAS08102.1| isopentenyl-adenosine A37 tRNA methylthiolase [Escherichia coli
           O127:H6 str. E2348/69]
 gi|281177809|dbj|BAI54139.1| conserved hypothetical protein [Escherichia coli SE15]
 gi|312290193|gb|EFR18076.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli 2362-75]
 gi|315299188|gb|EFU58442.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli MS 16-3]
 gi|331054931|gb|EGI26940.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli TA206]
          Length = 474

 Score =  496 bits (1277), Expect = e-138,   Method: Composition-based stats.
 Identities = 199/449 (44%), Positives = 291/449 (64%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++  +K++GCQMN YDS +M D+  +  GY+  +  ++AD+++LNTC IREKA EKV+
Sbjct: 1   MTKKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTDVAEEADVLLLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR + LK        DL++ V GCVA  EGE I +R+  V+++ GPQT +RLPE++ 
Sbjct: 61  HQLGRWKLLKEK----NPDLIIGVGGCVASQEGEHIRQRAHYVDIIFGPQTLHRLPEMIN 116

Query: 142 RARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
             R  +  VVD  +   +KF+RL        R  G TAF++I EGC+K+CT+CVVPYTRG
Sbjct: 117 SVRGDRSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTYCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR    ++ E  +L   GV E+ LLGQNVNAWRG+  DG   TF+DLL  ++ I G+
Sbjct: 172 EEVSRPSDDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTTGTFADLLRLVAAIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+TTSHP + +D +I+ + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II 
Sbjct: 232 DRIRFTTSHPIEFTDDIIEVYRDTPELVSFLHLPVQSGSDRILNLMGRTHTALEYKAIIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R+ RPDI ISSDFIVGFPGET DDF  TM L+  + +  ++SF +S R GTP ++M++
Sbjct: 292 KLRAARPDIQISSDFIVGFPGETTDDFEKTMKLIADVNFDMSYSFIFSARPGTPAADMVD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439
            V E  K +RL  LQ+++ +Q ++++   +G    +L+E   ++   +L GR+   + V 
Sbjct: 352 DVPEEEKKQRLYILQERINQQAMAWSRRMLGTTQRILVEGTSRKSIMELSGRTENNRVVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG  + V ITDV  ++L G++V
Sbjct: 412 FEGTPDMIGKFVDVEITDVYPNSLRGKVV 440


>gi|191168679|ref|ZP_03030459.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli B7A]
 gi|309795469|ref|ZP_07689886.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli MS
           145-7]
 gi|190901271|gb|EDV61040.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli B7A]
 gi|308120844|gb|EFO58106.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli MS
           145-7]
          Length = 474

 Score =  496 bits (1277), Expect = e-138,   Method: Composition-based stats.
 Identities = 197/449 (43%), Positives = 291/449 (64%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++  +K++GCQMN YDS +M D+  +  GY+  +  ++AD+++LNTC IREKA EKV+
Sbjct: 1   MTKKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTDVAEEADVLLLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR + LK        DL++ V GCVA  EGE I +R+  V+++ GPQT +RLPE++ 
Sbjct: 61  HQLGRWKLLKEK----NPDLIIGVGGCVASQEGEHIRQRAHYVDIIFGPQTLHRLPEMIN 116

Query: 142 RARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
             R  +  VVD  +   +KF+RL        R  G TAF++I EGC+K+CT+CVVPYTRG
Sbjct: 117 SVRGYRSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTYCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR    ++ E  +L   GV E+ LLGQNVNAWRG+  DG   +F+DLL  ++ I G+
Sbjct: 172 EEVSRPSDDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTTGSFADLLRLVAAIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+TTSHP + +D +I+ + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II 
Sbjct: 232 DRIRFTTSHPIEFTDDIIEVYRDTPELVSFLHLPVQSGSDRILNLMGRTHTALEYKAIIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R+ RPDI ISSDFIVGFPGET +DF  TM L+  + +  ++SF +S R GTP ++M++
Sbjct: 292 KLRAARPDIQISSDFIVGFPGETTEDFEKTMKLIADVNFDMSYSFIFSARPGTPAADMVD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439
            V E  K +RL  LQ+++ +Q ++++   +G    +L+E   ++   +L GR+   + V 
Sbjct: 352 DVPEEEKKQRLYILQERINQQAMAWSRRMLGTTQRILVEGTSRKSIMELSGRTENNRVVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG  + V ITDV  ++L G++V
Sbjct: 412 FEGTPDMIGKFVDVEITDVYPNSLRGKVV 440


>gi|332342008|gb|AEE55342.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli UMNK88]
          Length = 474

 Score =  496 bits (1277), Expect = e-138,   Method: Composition-based stats.
 Identities = 196/449 (43%), Positives = 291/449 (64%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++  +K++GCQMN YDS +M D+  +  GY+  +  ++AD+++LNTC IREKA EKV+
Sbjct: 1   MTKKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTDVAEEADVLLLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR + LK        DL++ V GCVA  EGE I +R+  V+++ GPQT +RLP+++ 
Sbjct: 61  HQLGRWKLLKEK----NPDLIIGVGGCVASQEGEHIRQRAHYVDIIFGPQTLHRLPKMIN 116

Query: 142 RARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
             R  +  VVD  +   +KF+RL        R  G TAF++I EGC+K+CT+CVVPYTRG
Sbjct: 117 SVRGDRSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTYCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR    ++ E  +L   GV E+ LLGQNVNAWRG+  DG   +F+DLL  ++ I G+
Sbjct: 172 EEVSRPSDDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTTGSFADLLRLVAAIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+TTSHP + +D +I+ + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II 
Sbjct: 232 DRIRFTTSHPIEFTDDIIEVYRDTPELVSFLHLPVQSGSDRILNLMGRTHTALEYKAIIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R+ RPDI ISSDFIVGFPGET +DF  TM L+  + +  ++SF +S R GTP ++M++
Sbjct: 292 KLRAARPDIQISSDFIVGFPGETTEDFEKTMKLIADVNFDMSYSFIFSARPGTPAADMVD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439
            V E  K +RL  LQ+++ +Q ++++   +G    +L+E   ++   +L GR+   + V 
Sbjct: 352 DVPEEEKKQRLYILQERINQQAMAWSRRMLGTTQRILVEGTSRKSIMELSGRTENNRVVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG  + V ITDV  ++L G++V
Sbjct: 412 FEGTPDMIGKFVDVEITDVYPNSLRGKVV 440


>gi|15800374|ref|NP_286386.1| hypothetical protein Z0810 [Escherichia coli O157:H7 EDL933]
 gi|25305438|pir||F85566 hypothetical protein yleA [imported] - Escherichia coli  (strain
           O157:H7, substrain EDL933)
 gi|12513570|gb|AAG54994.1|AE005245_3 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933]
          Length = 474

 Score =  496 bits (1277), Expect = e-138,   Method: Composition-based stats.
 Identities = 197/449 (43%), Positives = 290/449 (64%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++  +K++GCQMN YDS +M D+  +  GY+  +  ++AD+++LNTC IREKA EKV+
Sbjct: 1   MTKKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTDVAEEADVLLLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR + LK        DL++ V GCVA  EGE I +R+  V+++ GPQT +RLPE++ 
Sbjct: 61  HQLGRWKLLKEK----NPDLIIGVGGCVASQEGEHIRQRAHYVDIIFGPQTLHRLPEMIN 116

Query: 142 RARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
             R  +  VVD  +   +KF+RL        R  G TAF++I EGC+K+CT+CVVPYTRG
Sbjct: 117 SVRGDRSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTYCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR    ++ E  +L   GV E+ LLGQNVNAWRG+  DG   +F+DLL  ++ I G+
Sbjct: 172 EEVSRPSDDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTTGSFADLLRLVAAIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+TTSHP + +D +I+ + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II 
Sbjct: 232 DRIRFTTSHPIEFTDDIIEVYRDTPELVSFLHLPVQSGSDRILNLMGRTHTALEYKAIIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R+ RPDI ISSDFIVGFPGET +DF  TM L+  + +  ++SF +S R GTP ++M++
Sbjct: 292 KLRAARPDIQISSDFIVGFPGETTEDFEKTMKLIADVNFDMSYSFIFSARPGTPAADMVD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439
            V E  K +RL  LQ+++ +Q +++    +G    +L+E   ++   +L GR+   + V 
Sbjct: 352 DVPEEEKKQRLYILQERINQQAMAWXRRMLGTTQRILVEGTSRKSIMELSGRTENNRVVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG  + V ITDV  ++L G++V
Sbjct: 412 FEGTPDMIGKFVDVEITDVYPNSLRGKVV 440


>gi|229890667|sp|Q5PLT0|MIAB_SALPA RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|229890669|sp|B5BCD1|MIAB_SALPK RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
          Length = 474

 Score =  496 bits (1276), Expect = e-138,   Method: Composition-based stats.
 Identities = 199/449 (44%), Positives = 291/449 (64%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++  +K++GCQMN YDS +M D+  +  GY+  +  ++AD+++LNTC IREKA EKV+
Sbjct: 1   MTKKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTDVAEEADVLLLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR R LK        DL++ V GCVA  EGE I +R+  V+++ GPQT +RLPE++ 
Sbjct: 61  HQLGRWRLLKEK----NPDLIIGVGGCVASQEGEHIRQRAHYVDIIFGPQTSHRLPEMIN 116

Query: 142 RARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
             R  +  VVD  +   +KF+RL        R  G TAF++I EGC+K+CT+CVVPYTRG
Sbjct: 117 SVRGDRSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTYCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR    ++ E  +L   GV E+ LLGQNVNAWRG+  DG   TF+DLL  ++ I G+
Sbjct: 172 EEVSRPSDDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTTGTFADLLRLVAAIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+TTSHP + +D +I+ + D   L+ +LHLPVQSGSDR+L  M R HTA EY+ II 
Sbjct: 232 DRIRFTTSHPIEFTDDIIEVYRDTPELVSFLHLPVQSGSDRVLNLMGRTHTALEYKAIIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R+ RPDI ISSDFIVGFPGET DDF  TM L+  + +  ++SF +S R GTP ++M++
Sbjct: 292 KLRAARPDIQISSDFIVGFPGETTDDFEKTMKLIADVNFDMSYSFIFSARPGTPAADMVD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439
            V E  K +RL  LQ+++ +Q ++++   +G    +L+E   ++   +L GR+   + V 
Sbjct: 352 DVPEEEKKQRLYILQERINQQAMAWSRRMLGTTQRILVEGTSRKNIMELSGRTENNRVVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG  + V ITDV  ++L G++V
Sbjct: 412 FEGTPEMIGKFVDVEITDVYPNSLRGKVV 440


>gi|300927231|ref|ZP_07142963.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli MS
           182-1]
 gi|301329194|ref|ZP_07222185.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli MS 78-1]
 gi|300416797|gb|EFK00108.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli MS
           182-1]
 gi|300844482|gb|EFK72242.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli MS 78-1]
          Length = 474

 Score =  496 bits (1276), Expect = e-138,   Method: Composition-based stats.
 Identities = 196/449 (43%), Positives = 291/449 (64%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++  +K++GCQMN YDS +M D+  +  GY+  +  ++AD+++LNTC IREKA EKV+
Sbjct: 1   MTKKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTDVAEEADVLLLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR + LK        DL++ V GCVA  EGE I +R+  V+++ GPQT +RLPE++ 
Sbjct: 61  HQLGRWKLLKEK----NPDLIIGVGGCVASQEGEHIRQRAHYVDIIFGPQTLHRLPEMIN 116

Query: 142 RARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
             R  +  VVD  +   +KF+RL        R  G TAF++I EGC+K+CT+CVVPYTRG
Sbjct: 117 SVRGDRSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTYCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR    ++ E  +L   GV E+ LLGQNVNAWRG+  DG   +F++LL  ++ I G+
Sbjct: 172 EEVSRPSDDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTTGSFANLLRLVAAIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+TTSHP + +D +I+ + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II 
Sbjct: 232 DRIRFTTSHPIEFTDDIIEVYRDTPELVSFLHLPVQSGSDRILNLMGRTHTALEYKAIIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R+ RPDI ISSDFIVGFPGET +DF  TM L+  + +  ++SF +S R GTP ++M++
Sbjct: 292 KLRAARPDIQISSDFIVGFPGETTEDFEKTMKLIADVNFDMSYSFIFSARPGTPAADMVD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439
            V E  K +RL  LQ+++ +Q ++++   +G    +L+E   ++   +L GR+   + V 
Sbjct: 352 DVPEEEKKQRLYILQERINQQAMAWSRRMLGTTQRILVEGTSRKSIMELSGRTENNRVVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG  + V ITDV  ++L G++V
Sbjct: 412 FEGTPDMIGKFVDVEITDVYPNSLRGKVV 440


>gi|205351955|ref|YP_002225756.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella
           enterica subsp. enterica serovar Gallinarum str. 287/91]
 gi|207856135|ref|YP_002242786.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella
           enterica subsp. enterica serovar Enteritidis str.
           P125109]
 gi|229890644|sp|B5QWC1|MIAB_SALEP RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|229890645|sp|B5R817|MIAB_SALG2 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|205271736|emb|CAR36570.1| MiaB protein (putative tRNA-thiotransferase (or
           tRNA-methylthiotransferase)) [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|206707938|emb|CAR32227.1| MiaB protein (putative tRNA-thiotransferase (or
           tRNA-methylthiotransferase)) [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|326626994|gb|EGE33337.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Salmonella enterica subsp. enterica serovar Gallinarum
           str. 9]
          Length = 474

 Score =  496 bits (1276), Expect = e-138,   Method: Composition-based stats.
 Identities = 199/449 (44%), Positives = 292/449 (65%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++  +K++GCQMN YDS +M D+  +  GY+  +  ++AD+++LNTC IREKA EKV+
Sbjct: 1   MTKKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTDVAEEADVLLLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR R LK        DL++ V GCVA  EGE I +R+  V+++ GPQT +RLPE++ 
Sbjct: 61  HQLGRWRLLKEK----NPDLIIGVGGCVASQEGEHIRQRAHYVDIIFGPQTLHRLPEMIN 116

Query: 142 RARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
             R  +  VVD  +   +KF+RL        R  G TAF++I EGC+K+CT+CVVPYTRG
Sbjct: 117 SVRGDRSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTYCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR    ++ E  +L   GV E+ LLGQNVNAWRG+  DG   TF+DLL  ++ I G+
Sbjct: 172 EEVSRPSDDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTTGTFADLLRLVAAIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+TTSHP + +D +I+ + D   L+ +LHLPVQSGSDR+L  M R HTA EY+ II 
Sbjct: 232 DRIRFTTSHPIEFTDDIIEVYRDTPELVSFLHLPVQSGSDRVLNLMGRTHTALEYKAIIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R+ RPDI ISSDFIVGFPGET+DDF  TM L+  + +  ++SF +S R GTP ++M++
Sbjct: 292 KLRAARPDIQISSDFIVGFPGETNDDFEKTMKLIADVNFDMSYSFIFSARPGTPAADMVD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439
            V E  K +RL  LQ+++ +Q ++++   +G    +L+E   ++   +L GR+   + V 
Sbjct: 352 DVPEEEKKQRLYILQERINQQAMAWSRRMLGTTQRILVEGTSRKNIMELSGRTENNRVVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG  + V ITDV  ++L G++V
Sbjct: 412 FEGTPEMIGKFVDVEITDVYPNSLRGKVV 440


>gi|186894491|ref|YP_001871603.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Yersinia
           pseudotuberculosis PB1/+]
 gi|186697517|gb|ACC88146.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Yersinia
           pseudotuberculosis PB1/+]
          Length = 509

 Score =  496 bits (1276), Expect = e-138,   Method: Composition-based stats.
 Identities = 202/455 (44%), Positives = 288/455 (63%), Gaps = 12/455 (2%)

Query: 17  IVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREK 75
           ++    + ++  +K++GCQMN YDS +M D+  S  GY+     ++ADL++LNTC IREK
Sbjct: 30  LMMNNPMTKKLHIKTWGCQMNEYDSSKMADLLASTHGYQLTTIPEEADLLLLNTCSIREK 89

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135
           A EKV+S LG+ + LK         L++ V GCVA  EGE++ +R+P V+V+ GPQT +R
Sbjct: 90  AQEKVFSLLGQWKLLKEK----NPQLIIGVGGCVASQEGEQLRQRAPCVDVIFGPQTLHR 145

Query: 136 LPELLERAR-FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCV 194
           LPE++   +     VVD  +   +KF+RL        R  G TAF++I EGC+K+CTFCV
Sbjct: 146 LPEMINHVQGTNSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTFCV 200

Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL 254
           VPYTRG E+SR    ++ E  +L   GV E+ LLGQNVNA+RG   DG+ C+F++LL  +
Sbjct: 201 VPYTRGEEVSRPSDDILFEIAQLAAQGVREVNLLGQNVNAYRGATYDGDICSFAELLRLV 260

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
           + I G+ R+R+TTSHP + +D +I  + D   L+ +LHLPVQSGSDRIL  M R HTA E
Sbjct: 261 AAIDGIDRIRFTTSHPIEFTDDIIDVYRDTPELVSFLHLPVQSGSDRILTMMKRAHTALE 320

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
           Y+ II ++R  RPDI ISSDFIVGFPGET  DF  TM LV  I +  ++SF YSPR GTP
Sbjct: 321 YKAIIRKLRQARPDIQISSDFIVGFPGETQQDFEQTMKLVADIHFDTSYSFIYSPRPGTP 380

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSP 433
            +++ + V E  K +RL  LQ+++ +Q +  +   VG +  VL+E   ++   +L GR+ 
Sbjct: 381 AADLPDNVSEEEKKQRLHILQQRISQQAMEISRKMVGTVQRVLVEGTSRKNVMELAGRTE 440

Query: 434 WLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
             + V        IG  + V I +V  S+L G L+
Sbjct: 441 NNRVVNFEGSPDMIGKFVDVEIVNVYASSLRGILL 475


>gi|91209704|ref|YP_539690.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Escherichia
           coli UTI89]
 gi|117622870|ref|YP_851783.1| isopentenyl-adenosine A37 tRNA methylthiolase [Escherichia coli
           APEC O1]
 gi|218557592|ref|YP_002390505.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Escherichia
           coli S88]
 gi|122424608|sp|Q1REQ5|MIAB_ECOUT RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|229890519|sp|B7MFS7|MIAB_ECO45 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|229890527|sp|A1A8S9|MIAB_ECOK1 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|91071278|gb|ABE06159.1| hypothetical protein UTI89_C0659 [Escherichia coli UTI89]
 gi|115511994|gb|ABJ00069.1| isopentenyl-adenosine A37 tRNA methylthiolase [Escherichia coli
           APEC O1]
 gi|218364361|emb|CAR02036.1| isopentenyl-adenosine A37 tRNA methylthiolase [Escherichia coli
           S88]
 gi|294489495|gb|ADE88251.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli IHE3034]
 gi|307627908|gb|ADN72212.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Escherichia
           coli UM146]
 gi|315287089|gb|EFU46503.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli MS
           110-3]
 gi|323952768|gb|EGB48636.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli H252]
 gi|323958414|gb|EGB54120.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli H263]
          Length = 474

 Score =  496 bits (1276), Expect = e-138,   Method: Composition-based stats.
 Identities = 198/449 (44%), Positives = 291/449 (64%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++  +K++GCQMN YDS +M D+  +  GY+  +  ++AD+++LNTC IREKA EKV+
Sbjct: 1   MTKKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTDVAEEADVLLLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR + LK        DL++ V GCVA  EGE I +R+  V+++ GPQT +RLPE++ 
Sbjct: 61  HQLGRWKLLKEK----NPDLIIGVGGCVASQEGEHIRQRAHYVDIIFGPQTLHRLPEMIN 116

Query: 142 RARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
             R  +  VVD  +   +KF+RL        R  G TAF++I EGC+K+CT+CVVPYTRG
Sbjct: 117 SVRGDRSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTYCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR    ++ E  +L   GV E+ LLGQNVNAWRG+  DG   +F+DLL  ++ I G+
Sbjct: 172 EEVSRPSDDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTTGSFADLLRLVAAIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+TTSHP + +D +I+ + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II 
Sbjct: 232 DRIRFTTSHPIEFTDDIIEVYRDTPELVSFLHLPVQSGSDRILNLMGRTHTALEYKAIIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R+ RPDI ISSDFIVGFPGET DDF  TM L+  + +  ++SF +S R GTP ++M++
Sbjct: 292 KLRAARPDIQISSDFIVGFPGETTDDFEKTMKLIADVNFDMSYSFIFSARPGTPAADMVD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439
            V E  K +RL  LQ+++ +Q ++++   +G    +L+E   ++   +L GR+   + V 
Sbjct: 352 DVPEEEKKQRLYILQERINQQAMAWSRRMLGTTQRILVEGTSRKSIMELSGRTENNRVVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG  + V ITDV  ++L G++V
Sbjct: 412 FEGTPDMIGKFVDVEITDVYPNSLRGKVV 440


>gi|170767811|ref|ZP_02902264.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia albertii
           TW07627]
 gi|170123299|gb|EDS92230.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia albertii
           TW07627]
          Length = 474

 Score =  496 bits (1276), Expect = e-138,   Method: Composition-based stats.
 Identities = 197/449 (43%), Positives = 291/449 (64%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++  +K++GCQMN YDS +M D+  +  GY+  +  ++AD+++LNTC IREKA EKV+
Sbjct: 1   MTKKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTDVAEEADVLLLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR + LK        DL++ V GCVA  EG+ I +R+  V+++ GPQT +RLPE++ 
Sbjct: 61  HQLGRWKLLKEK----NPDLIIGVGGCVASQEGDHIRQRAHYVDIIFGPQTLHRLPEMIN 116

Query: 142 RARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
             R  +  VVD  +   +KF+RL        R  G TAF++I EGC+K+CT+CVVPYTRG
Sbjct: 117 SVRGDRSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTYCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR    ++ E  +L   GV E+ LLGQNVNAWRG+  DG   TF+DLL  ++ I G+
Sbjct: 172 EEVSRPSDDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTTGTFADLLRLVAAIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+TTSHP + +D +I+ + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II 
Sbjct: 232 DRIRFTTSHPIEFTDDIIEVYRDTPELVSFLHLPVQSGSDRILNLMGRTHTALEYKAIIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R+ RPDI ISSDFIVGFPGET +DF  TM L+  + +  ++SF +S R GTP ++M++
Sbjct: 292 KLRAARPDIQISSDFIVGFPGETTEDFEKTMKLITDVNFDMSYSFIFSARPGTPAADMVD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439
            V E  K +RL  LQ+++ +Q ++++   +G    +L+E   ++   +L GR+   + V 
Sbjct: 352 DVSEEEKKQRLYILQERINQQAMAWSRRMLGTTQRILVEGTSRKNIMELSGRTENNRVVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG  + V ITDV  ++L G++V
Sbjct: 412 FEGTPDMIGKFVDVEITDVYPNSLRGKVV 440


>gi|114571572|ref|YP_758252.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Maricaulis
           maris MCS10]
 gi|122314895|sp|Q0AK79|MIAB_MARMM RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|114342034|gb|ABI67314.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Maricaulis maris MCS10]
          Length = 456

 Score =  496 bits (1276), Expect = e-138,   Method: Composition-based stats.
 Identities = 249/452 (55%), Positives = 323/452 (71%), Gaps = 10/452 (2%)

Query: 21  CIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKV 80
               +R F+K+YGCQMNVYDS RM+D+    GYE   + + ADL++LNTCHIREKAAEKV
Sbjct: 2   STTRKRLFIKTYGCQMNVYDSDRMKDVLTPLGYESAETPEGADLVILNTCHIREKAAEKV 61

Query: 81  YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140
           YS LGR+R LK+ +   GG + + VAGCVAQAEG EI++R+P+V++VVGPQTY++LPEL+
Sbjct: 62  YSELGRLRPLKDEKAASGG-MTIAVAGCVAQAEGAEIMKRAPVVDLVVGPQTYHKLPELI 120

Query: 141 ERARFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
            +A   K   +DT++ VEDKF+RL    G   +  G +AF+T+QEGCDKFCTFCVVPYTR
Sbjct: 121 AQAHRAKGEALDTEFEVEDKFDRL----GSDRQVEGYSAFVTVQEGCDKFCTFCVVPYTR 176

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK----CTFSDLLYSLS 255
           G E SR + Q+V E R L   G+ E+TLLGQNVNA+ G    G +         L+  ++
Sbjct: 177 GAEWSRPVDQIVAEIRALAAKGIREVTLLGQNVNAFHGAPPSGREAEGAWGLGQLVRHVA 236

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
            I G+ R+R+TTSHPRDM + LI+A  D   LMPY HLPVQ+GSD+ILKSMNR+HTA EY
Sbjct: 237 LIGGIERIRFTTSHPRDMDEVLIQAFADTPKLMPYFHLPVQAGSDKILKSMNRQHTAEEY 296

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
             IIDR+R+ RPDIAIS D IVGFPGETD DF AT+DLV ++ +A  FSFKYS R GTPG
Sbjct: 297 VAIIDRLRAARPDIAISGDMIVGFPGETDADFEATLDLVRRVKFASCFSFKYSKRPGTPG 356

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWL 435
           + M  QVDE VK+ RL  LQ+ L +QQ +FN++ +G+ + VL EK G+  G+L GRSP+L
Sbjct: 357 AAMFNQVDEGVKSARLAVLQELLSDQQAAFNESMIGRTLPVLFEKPGRMGGQLHGRSPYL 416

Query: 436 QSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
           QSV ++     IG + +VRI     ++L G L
Sbjct: 417 QSVHVDGPAELIGQVGEVRIEAASRNSLSGSL 448


>gi|16764047|ref|NP_459662.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella
           enterica subsp. enterica serovar Typhimurium str. LT2]
 gi|167550789|ref|ZP_02344545.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA29]
 gi|167990681|ref|ZP_02571781.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Salmonella enterica
           subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168231688|ref|ZP_02656746.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Salmonella enterica
           subsp. enterica serovar Kentucky str. CDC 191]
 gi|168236659|ref|ZP_02661717.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. SL480]
 gi|168240521|ref|ZP_02665453.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL486]
 gi|168264394|ref|ZP_02686367.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Salmonella enterica
           subsp. enterica serovar Hadar str. RI_05P066]
 gi|168465849|ref|ZP_02699731.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Salmonella enterica
           subsp. enterica serovar Newport str. SL317]
 gi|168820202|ref|ZP_02832202.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Salmonella enterica
           subsp. enterica serovar Weltevreden str. HI_N05-537]
 gi|194446753|ref|YP_002039914.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella
           enterica subsp. enterica serovar Newport str. SL254]
 gi|194450672|ref|YP_002044705.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL476]
 gi|194471594|ref|ZP_03077578.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Salmonella enterica
           subsp. enterica serovar Kentucky str. CVM29188]
 gi|194734184|ref|YP_002113781.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           CVM19633]
 gi|197248340|ref|YP_002145647.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella
           enterica subsp. enterica serovar Agona str. SL483]
 gi|197263845|ref|ZP_03163919.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA23]
 gi|198245491|ref|YP_002214659.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella
           enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|200391054|ref|ZP_03217665.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Salmonella enterica
           subsp. enterica serovar Virchow str. SL491]
 gi|204930519|ref|ZP_03221449.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Salmonella enterica
           subsp. enterica serovar Javiana str. GA_MM04042433]
 gi|213425074|ref|ZP_03357824.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Salmonella enterica
           subsp. enterica serovar Typhi str. E02-1180]
 gi|213583025|ref|ZP_03364851.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-0664]
 gi|213647865|ref|ZP_03377918.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Salmonella enterica
           subsp. enterica serovar Typhi str. J185]
 gi|213859100|ref|ZP_03385071.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Salmonella enterica
           subsp. enterica serovar Typhi str. M223]
 gi|238911620|ref|ZP_04655457.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Salmonella enterica
           subsp. enterica serovar Tennessee str. CDC07-0191]
 gi|289825599|ref|ZP_06544785.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella
           enterica subsp. enterica serovar Typhi str. E98-3139]
 gi|81549773|sp|Q9RCI2|MIAB_SALTY RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|229890639|sp|B5EZB2|MIAB_SALA4 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|229890643|sp|B5FNB2|MIAB_SALDC RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|229890646|sp|B4TB74|MIAB_SALHS RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|229890647|sp|B4SYN0|MIAB_SALNS RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|229890660|sp|B4TPZ0|MIAB_SALSV RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|229890665|sp|Q8Z8G5|MIAB_SALTI RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|229890668|sp|A9MUH8|MIAB_SALPB RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|229890674|sp|Q57RQ7|MIAB_SALCH RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|6523483|emb|CAB62263.1| MiaB protein [Salmonella typhimurium]
 gi|16419184|gb|AAL19621.1| methylthiolation of isopentenylated A37 derivatives in rRNA
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. LT2]
 gi|194405416|gb|ACF65638.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
 gi|194408976|gb|ACF69195.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|194457958|gb|EDX46797.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Salmonella enterica
           subsp. enterica serovar Kentucky str. CVM29188]
 gi|194709686|gb|ACF88907.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|195632043|gb|EDX50563.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Salmonella enterica
           subsp. enterica serovar Newport str. SL317]
 gi|197212043|gb|ACH49440.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
 gi|197242100|gb|EDY24720.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA23]
 gi|197290335|gb|EDY29691.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. SL480]
 gi|197940007|gb|ACH77340.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|199603499|gb|EDZ02045.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Salmonella enterica
           subsp. enterica serovar Virchow str. SL491]
 gi|204320453|gb|EDZ05656.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Salmonella enterica
           subsp. enterica serovar Javiana str. GA_MM04042433]
 gi|205324195|gb|EDZ12034.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA29]
 gi|205330871|gb|EDZ17635.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Salmonella enterica
           subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205334151|gb|EDZ20915.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Salmonella enterica
           subsp. enterica serovar Kentucky str. CDC 191]
 gi|205339926|gb|EDZ26690.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL486]
 gi|205343227|gb|EDZ29991.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Salmonella enterica
           subsp. enterica serovar Weltevreden str. HI_N05-537]
 gi|205347114|gb|EDZ33745.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Salmonella enterica
           subsp. enterica serovar Hadar str. RI_05P066]
 gi|261245942|emb|CBG23744.1| MiaB protein (putative tRNA-thiotransferase (or
           tRNA-methylthiotransferase)) [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267992407|gb|ACY87292.1| rRNA modification protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|301157270|emb|CBW16758.1| MiaB protein (putative tRNA-thiotransferase (or
           tRNA-methylthiotransferase)) [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|312911702|dbj|BAJ35676.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           T000240]
 gi|321226251|gb|EFX51302.1| tRNA-i(6)A37 methylthiotransferase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|322613204|gb|EFY10147.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           315996572]
 gi|322621272|gb|EFY18129.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-1]
 gi|322623692|gb|EFY20530.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-3]
 gi|322628964|gb|EFY25743.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-4]
 gi|322631686|gb|EFY28440.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           515920-1]
 gi|322637578|gb|EFY34280.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           515920-2]
 gi|322641918|gb|EFY38548.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella
           enterica subsp. enterica serovar Montevideo str. 531954]
 gi|322646762|gb|EFY43268.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322651463|gb|EFY47843.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           OH_2009072675]
 gi|322653086|gb|EFY49420.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322658807|gb|EFY55062.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella
           enterica subsp. enterica serovar Montevideo str. 19N]
 gi|322664924|gb|EFY61117.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           81038-01]
 gi|322668926|gb|EFY65078.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MD_MDA09249507]
 gi|322670568|gb|EFY66701.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella
           enterica subsp. enterica serovar Montevideo str. 414877]
 gi|322675309|gb|EFY71385.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella
           enterica subsp. enterica serovar Montevideo str. 366867]
 gi|322682220|gb|EFY78245.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella
           enterica subsp. enterica serovar Montevideo str. 413180]
 gi|322684951|gb|EFY80948.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella
           enterica subsp. enterica serovar Montevideo str. 446600]
 gi|323128987|gb|ADX16417.1| rRNA modification protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
 gi|323193991|gb|EFZ79193.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           609458-1]
 gi|323197917|gb|EFZ83039.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           556150-1]
 gi|323202036|gb|EFZ87096.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella
           enterica subsp. enterica serovar Montevideo str. 609460]
 gi|323207169|gb|EFZ92122.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           507440-20]
 gi|323210924|gb|EFZ95787.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella
           enterica subsp. enterica serovar Montevideo str. 556152]
 gi|323214304|gb|EFZ99055.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB101509-0077]
 gi|323219291|gb|EGA03782.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB102109-0047]
 gi|323225498|gb|EGA09728.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB110209-0055]
 gi|323231057|gb|EGA15173.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB111609-0052]
 gi|323234111|gb|EGA18200.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           2009083312]
 gi|323238194|gb|EGA22252.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           2009085258]
 gi|323242572|gb|EGA26596.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           315731156]
 gi|323248451|gb|EGA32385.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2009159199]
 gi|323251334|gb|EGA35206.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008282]
 gi|323259262|gb|EGA42905.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008283]
 gi|323262137|gb|EGA45699.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008284]
 gi|323264851|gb|EGA48352.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008285]
 gi|323272312|gb|EGA55719.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008287]
 gi|326622414|gb|EGE28759.1| rRNA modification protein [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
 gi|332987614|gb|AEF06597.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella
           enterica subsp. enterica serovar Typhimurium str. UK-1]
          Length = 474

 Score =  496 bits (1276), Expect = e-138,   Method: Composition-based stats.
 Identities = 199/449 (44%), Positives = 291/449 (64%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++  +K++GCQMN YDS +M D+  +  GY+  +  ++AD+++LNTC IREKA EKV+
Sbjct: 1   MTKKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTDVAEEADVLLLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR R LK        DL++ V GCVA  EGE I +R+  V+++ GPQT +RLPE++ 
Sbjct: 61  HQLGRWRLLKEK----NPDLIIGVGGCVASQEGEHIRQRAHYVDIIFGPQTLHRLPEMIN 116

Query: 142 RARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
             R  +  VVD  +   +KF+RL        R  G TAF++I EGC+K+CT+CVVPYTRG
Sbjct: 117 SVRGDRSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTYCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR    ++ E  +L   GV E+ LLGQNVNAWRG+  DG   TF+DLL  ++ I G+
Sbjct: 172 EEVSRPSDDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTTGTFADLLRLVAAIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+TTSHP + +D +I+ + D   L+ +LHLPVQSGSDR+L  M R HTA EY+ II 
Sbjct: 232 DRIRFTTSHPIEFTDDIIEVYRDTPELVSFLHLPVQSGSDRVLNLMGRTHTALEYKAIIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R+ RPDI ISSDFIVGFPGET DDF  TM L+  + +  ++SF +S R GTP ++M++
Sbjct: 292 KLRAARPDIQISSDFIVGFPGETTDDFEKTMKLIADVNFDMSYSFIFSARPGTPAADMVD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439
            V E  K +RL  LQ+++ +Q ++++   +G    +L+E   ++   +L GR+   + V 
Sbjct: 352 DVPEEEKKQRLYILQERINQQAMAWSRRMLGTTQRILVEGTSRKNIMELSGRTENNRVVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG  + V ITDV  ++L G++V
Sbjct: 412 FEGTPEMIGKFVDVEITDVYPNSLRGKVV 440


>gi|221232993|ref|YP_002515429.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Caulobacter
           crescentus NA1000]
 gi|220962165|gb|ACL93521.1| tRNA 2-methylthioadenosine synthase [Caulobacter crescentus NA1000]
          Length = 448

 Score =  496 bits (1276), Expect = e-138,   Method: Composition-based stats.
 Identities = 250/445 (56%), Positives = 322/445 (72%), Gaps = 12/445 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +R F+K+YGCQMNVYDS RM D+    GY  V+  + ADL+VLNTCHIREKA EKVYS L
Sbjct: 7   KRLFIKTYGCQMNVYDSERMADVLRPLGYGVVDEPEGADLVVLNTCHIREKATEKVYSEL 66

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           G I+ +K+ + + GG + + VAGCVAQAEG+EI+ R   V++VVGPQ Y++LPEL+ RA 
Sbjct: 67  GYIKQMKDRKAEAGGRMTIAVAGCVAQAEGKEIMNRQKAVDLVVGPQAYHQLPELIARAH 126

Query: 145 --FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
              G+R +  D++ ++KF+ L           GVTAFLT+QEGCDKFCTFCVVPYTRG E
Sbjct: 127 RATGER-LAADFAADEKFDALP----AERHVTGVTAFLTVQEGCDKFCTFCVVPYTRGGE 181

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR ++ +V+EA++L D GV E+TLLGQNVNA+     DG+  T + L+  L++I GL R
Sbjct: 182 WSRPVNDIVEEAKRLADQGVREVTLLGQNVNAY-----DGDGSTLAKLVRQLAKIDGLDR 236

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +RYTTSHPRDM D LI+AHG+L  LMPYLHLPVQ+GSD+ILK+MNR HTA  Y ++I++I
Sbjct: 237 IRYTTSHPRDMGDDLIEAHGELPELMPYLHLPVQAGSDKILKAMNRDHTAESYVKLIEKI 296

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+ RPDIA+S DFIVGFPGE D DF  T++LV ++G+A AFSFKYS R GTP S M  QV
Sbjct: 297 RAARPDIAMSGDFIVGFPGERDGDFEKTLELVREVGFASAFSFKYSRRPGTPASAMPGQV 356

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
           DE VKAERL  L + L EQQ +FN + VG+++ VL EK G+  G++VGRSP+LQ+V    
Sbjct: 357 DEAVKAERLERLNQLLDEQQRAFNASQVGKVLPVLFEKAGRHPGQIVGRSPYLQAVHAEG 416

Query: 443 KNHNIGDIIKVRITDVKISTLYGEL 467
               IG I+ V I      +L G L
Sbjct: 417 GEQLIGTIVPVHIESAAKMSLAGRL 441


>gi|52425745|ref|YP_088882.1| MiaB protein [Mannheimia succiniciproducens MBEL55E]
 gi|81386786|sp|Q65RW3|MIAB_MANSM RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|52307797|gb|AAU38297.1| MiaB protein [Mannheimia succiniciproducens MBEL55E]
          Length = 474

 Score =  495 bits (1275), Expect = e-138,   Method: Composition-based stats.
 Identities = 203/449 (45%), Positives = 295/449 (65%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + Q+  +K++GCQMN YDS +M D+  S  G E     + AD+++LNTC IREKA EKV+
Sbjct: 1   MTQKLHIKTWGCQMNEYDSSKMADLLQSTHGLELTEEAEQADVLLLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR + LK    K+  +L++ V GCVA  EGE I  R+P V+++ GPQT +RLPE++ 
Sbjct: 61  HQLGRWKELK----KKNPNLVIGVGGCVASQEGEHIRERAPYVDIIFGPQTLHRLPEMIN 116

Query: 142 RARFGKRVV-DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           + R G++ V D  +   +KF+RL        +  G TAF++I EGC+K+CT+CVVPYTRG
Sbjct: 117 QIRAGEKAVLDISFPEIEKFDRLP-----EPKAEGPTAFVSIMEGCNKYCTYCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR L  V+ E  +L + GV E+ LLGQNVNA+RG   DG  C+F++LL  ++ I G+
Sbjct: 172 EEVSRPLDDVLFEIAQLAEQGVREVNLLGQNVNAYRGPTHDGGICSFAELLRLVAAIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            RLR+TTS+P + +D +I  + D   L+ +LHLPVQ+GSDRIL  M R HTA EY+ II 
Sbjct: 232 DRLRFTTSNPIEFTDDIIDVYRDTPELVSFLHLPVQAGSDRILTMMKRGHTAIEYKSIIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R+VRP+I ISSDFIVGFPGET+++F  TM+L+ ++ +  +FSF YS R GTP ++M +
Sbjct: 292 KLRAVRPNIQISSDFIVGFPGETNEEFEQTMNLIQQVNFDMSFSFVYSARPGTPAADMPD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439
            V E  K +RL  LQ+++  Q   F+ A +G    VL+E   K+   +L GR+   + V 
Sbjct: 352 DVTEEEKKQRLYILQQRINNQAAQFSRAMLGTEQRVLVEGPSKKDIMELTGRTENNRIVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG  + ++ITDV  ++L G++V
Sbjct: 412 FAGTPDMIGKFVDIKITDVFTNSLRGDVV 440


>gi|323976357|gb|EGB71447.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli TW10509]
          Length = 474

 Score =  495 bits (1275), Expect = e-138,   Method: Composition-based stats.
 Identities = 196/449 (43%), Positives = 291/449 (64%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++  +K++GCQMN YDS +M D+  +  G++  +  ++AD+++LNTC IREKA EKV+
Sbjct: 1   MTKKLHIKTWGCQMNEYDSSKMADLLDATHGFQLTDVAEEADVLLLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR + LK        DL++ V GCVA  EGE I +R+  V+++ GPQT +RLPE++ 
Sbjct: 61  HQLGRWKLLKEK----NPDLIIGVGGCVASQEGEHIRQRAHYVDIIFGPQTLHRLPEMIN 116

Query: 142 RARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
             R  +  VVD  +   +KF+RL        R  G TAF++I EGC+K+CT+CVVPYTRG
Sbjct: 117 SVRGDRSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTYCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR    ++ E  +L   GV E+ LLGQNVNAWRG+  DG   +F+DLL  ++ I G+
Sbjct: 172 EEVSRPSDDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTTGSFADLLRLVAAIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+TTSHP + +D +I+ + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II 
Sbjct: 232 DRIRFTTSHPIEFTDDIIEVYRDTPELVSFLHLPVQSGSDRILNLMGRTHTALEYKAIIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R+ RPDI ISSDFIVGFPGET +DF  TM L+  + +  ++SF +S R GTP ++M++
Sbjct: 292 KLRAARPDIQISSDFIVGFPGETTEDFEKTMKLIADVNFDMSYSFIFSARPGTPAADMVD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439
            V E  K +RL  LQ+++ +Q ++++   +G    +L+E   ++   +L GR+   + V 
Sbjct: 352 DVPEEEKKQRLYILQERINQQAMAWSRRMLGTTQRILVEGTSRKSIMELSGRTENNRVVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG  + V ITDV  ++L G++V
Sbjct: 412 FEGTPDMIGKFVDVEITDVYPNSLRGKVV 440


>gi|170025226|ref|YP_001721731.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Yersinia
           pseudotuberculosis YPIII]
 gi|169751760|gb|ACA69278.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Yersinia
           pseudotuberculosis YPIII]
          Length = 509

 Score =  495 bits (1275), Expect = e-138,   Method: Composition-based stats.
 Identities = 202/455 (44%), Positives = 287/455 (63%), Gaps = 12/455 (2%)

Query: 17  IVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREK 75
           ++    + ++  +K++GCQMN YDS +M D+  S  GY+     ++ADL++LNTC IREK
Sbjct: 30  LMMNNPMTKKLHIKTWGCQMNEYDSSKMADLLASTHGYQLTTIPEEADLLLLNTCSIREK 89

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135
           A EKV+S LG+ + LK         L++ V GCVA  EGE++ +R+P V+V+ GPQT +R
Sbjct: 90  AQEKVFSLLGQWKLLKEK----NPQLIIGVGGCVASQEGEQLRQRAPCVDVIFGPQTLHR 145

Query: 136 LPELLERA-RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCV 194
           LPE++         VVD  +   +KF+RL        R  G TAF++I EGC+K+CTFCV
Sbjct: 146 LPEMINHVQETNSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTFCV 200

Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL 254
           VPYTRG E+SR    ++ E  +L   GV E+ LLGQNVNA+RG   DG+ C+F++LL  +
Sbjct: 201 VPYTRGEEVSRPSDDILFEIAQLAAQGVREVNLLGQNVNAYRGATYDGDICSFAELLRLV 260

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
           + I G+ R+R+TTSHP + +D +I  + D   L+ +LHLPVQSGSDRIL  M R HTA E
Sbjct: 261 AAIDGIDRIRFTTSHPIEFTDDIIDVYRDTPELVSFLHLPVQSGSDRILTMMKRAHTALE 320

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
           Y+ II ++R  RPDI ISSDFIVGFPGET  DF  TM LV  I +  ++SF YSPR GTP
Sbjct: 321 YKAIIRKLRQARPDIQISSDFIVGFPGETQQDFEQTMKLVADIHFDTSYSFIYSPRPGTP 380

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSP 433
            +++ + V E  K +RL  LQ+++ +Q +  +   VG +  VL+E   ++   +L GR+ 
Sbjct: 381 AADLPDNVSEEEKKQRLHILQQRISQQAMEISRKMVGTVQRVLVEGTSRKNVMELAGRTE 440

Query: 434 WLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
             + V        IG  + V I +V  S+L G L+
Sbjct: 441 NNRVVNFEGSPDMIGKFVDVEIVNVYASSLRGILL 475


>gi|261492918|ref|ZP_05989464.1| 2-methylthioadenine synthase [Mannheimia haemolytica serotype A2
           str. BOVINE]
 gi|261311459|gb|EEY12616.1| 2-methylthioadenine synthase [Mannheimia haemolytica serotype A2
           str. BOVINE]
          Length = 475

 Score =  495 bits (1275), Expect = e-138,   Method: Composition-based stats.
 Identities = 205/446 (45%), Positives = 298/446 (66%), Gaps = 12/446 (2%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +  + ++GCQMN YDS +M D+  S  G+E   + +DAD+++LNTC IREKA EKV+S L
Sbjct: 3   KLHITTWGCQMNEYDSSKMADLLNSTHGFELTENPEDADVLLLNTCSIREKAQEKVFSQL 62

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR +N K    K+  +L++ V GCVA  EGE I  R+P V++V GPQT +RLPE++ + R
Sbjct: 63  GRWKNWK----KDKPNLIIGVGGCVASQEGEHIRDRAPYVDIVFGPQTLHRLPEMINQIR 118

Query: 145 FGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            GK  +VD  +   +KF+RL        +  G TAF++I EGC+K+C+FCVVPYTRG E+
Sbjct: 119 GGKSSIVDISFPEIEKFDRLP-----EPKAEGPTAFVSIMEGCNKYCSFCVVPYTRGEEV 173

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR +  V+ E  +L   GV E+ LLGQNVNA+RG+  DG  CTF++LL  ++ I G+ RL
Sbjct: 174 SRPVDDVLFEIAQLAAQGVREVNLLGQNVNAYRGETFDGGICTFAELLRLVAAIDGIDRL 233

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           RYTTSHP + +D +I+ + D   L+ +LHLP+QSGSDR+L  M R HTA EY+ II ++R
Sbjct: 234 RYTTSHPIEFTDDIIEVYRDTPELVSFLHLPIQSGSDRVLTMMKRNHTALEYKAIIRKLR 293

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           +VRP+I ISSDFIVGFPGET +DF  TM +++++ +  +FSF YS R GTP +++ + V 
Sbjct: 294 AVRPEIQISSDFIVGFPGETAEDFEQTMKVIEQVNFDMSFSFIYSARPGTPAADLPDNVS 353

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNS 442
           ++ K ERL  LQ+++  Q + F+ A +G    +L+E   K+   +L GR+   + V    
Sbjct: 354 DDEKKERLSRLQQRINHQAMQFSRAMLGTEQRILVEGPSKKDLMELTGRTETNRVVNFVG 413

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
               IG  + V+ITDV  ++L GE++
Sbjct: 414 TPDMIGKFVDVKITDVYTNSLRGEVI 439


>gi|229890691|sp|Q0ABN9|MIAB_ALHEH RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
          Length = 448

 Score =  495 bits (1275), Expect = e-138,   Method: Composition-based stats.
 Identities = 208/446 (46%), Positives = 294/446 (65%), Gaps = 13/446 (2%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           R +VK++GCQMN YDS +M D+    +GY RV+S  DAD+I+LNTC +REKA EKV+S L
Sbjct: 4   RVYVKTHGCQMNEYDSDKMADVLVKERGYTRVDSPGDADVILLNTCSVREKAQEKVFSEL 63

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR ++ K          ++ V GCVA  EGE I++R+P V+VV GPQT +RLPE+++RAR
Sbjct: 64  GRWKDYKTR-----NGAVIGVGGCVASQEGEAIVQRAPHVDVVFGPQTLHRLPEMIDRAR 118

Query: 145 FGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            G R VVD  +   +KF+RL        R  G TAF++I EGC K+C+FCVVPYTRG EI
Sbjct: 119 DGGRSVVDVSFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCSKYCSFCVVPYTRGEEI 173

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR    V+ E   L + GV E+TLLGQNVNA+RG   DG  C  + L++ ++ + G+ R+
Sbjct: 174 SRPFEDVIAEVASLAEQGVREVTLLGQNVNAYRGPMADGTVCDLALLIHYVAALDGIGRI 233

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+TTSHP + SD LI+A+ +   L  +LHLPVQSGSD +LK M R HTA EY   I+RI+
Sbjct: 234 RFTTSHPVEFSDSLIEAYREEPKLAGHLHLPVQSGSDLVLKLMKRGHTAAEYLDKIERIK 293

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           + RP I+I+SDFIVG+PGE++ DF  T+ L++ +G+ Q+FSF YSPR GTP +++ +   
Sbjct: 294 AARPGISIASDFIVGYPGESEADFEDTLRLIEAVGFDQSFSFLYSPRPGTPAASLSDSTP 353

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLNS 442
             VK ERL  LQ+ +       +++ VG +  VL++    K+  ++ GR+   + V    
Sbjct: 354 AEVKRERLYRLQETINANARRISESMVGTVQRVLVDGRSRKDPNEISGRTENNRVVNFAG 413

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
               IG  ++VRIT+ K ++L GEL+
Sbjct: 414 HPRLIGHFVEVRITEAKPNSLRGELL 439


>gi|229890673|sp|A9MKB7|MIAB_SALAR RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
          Length = 474

 Score =  495 bits (1275), Expect = e-138,   Method: Composition-based stats.
 Identities = 199/449 (44%), Positives = 291/449 (64%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++  +K++GCQMN YDS +M D+  +  GY+  +  ++AD+++LNTC IREKA EKV+
Sbjct: 1   MTKKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTDVAEEADVLLLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR R LK        DL++ V GCVA  EGE I +R+  V+++ GPQT +RLPE++ 
Sbjct: 61  HQLGRWRLLKEK----NPDLIIGVGGCVASQEGEHIRQRAHYVDIIFGPQTLHRLPEMIN 116

Query: 142 RARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
             R  +  VVD  +   +KF+RL        R  G TAF++I EGC+K+CT+CVVPYTRG
Sbjct: 117 SVRGDRSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTYCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR    ++ E  +L   GV E+ LLGQNVNAWRG+  DG   TF+DLL  ++ I G+
Sbjct: 172 EEVSRPSDDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTTGTFADLLRLVAAIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+TTSHP + +D +I+ + D   L+ +LHLPVQSGSDR+L  M R HTA EY+ II 
Sbjct: 232 DRIRFTTSHPIEFTDDIIEVYRDTPELVSFLHLPVQSGSDRVLNLMGRTHTALEYKAIIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R+ RPDI ISSDFIVGFPGET DDF  TM L+  + +  ++SF +S R GTP ++M++
Sbjct: 292 KLRAARPDIQISSDFIVGFPGETSDDFEKTMKLIADVNFDMSYSFIFSARPGTPAADMVD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439
            V E  K +RL  LQ+++ +Q ++++   +G    +L+E   ++   +L GR+   + V 
Sbjct: 352 DVPEEEKKQRLYILQERINQQAMAWSRRMLGSTQRILVEGTSRKNIMELSGRTENNRVVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG  + V ITDV  ++L G++V
Sbjct: 412 FEGTPEMIGKFVDVEITDVYPNSLRGKVV 440


>gi|45440923|ref|NP_992462.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Yersinia
           pestis biovar Microtus str. 91001]
 gi|45435782|gb|AAS61339.1| putative tRNA-thiotransferase [Yersinia pestis biovar Microtus str.
           91001]
          Length = 512

 Score =  495 bits (1274), Expect = e-138,   Method: Composition-based stats.
 Identities = 202/455 (44%), Positives = 288/455 (63%), Gaps = 12/455 (2%)

Query: 17  IVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREK 75
           ++    + ++  +K++GCQMN YDS +M D+  S  GY+     ++ADL++LNTC IREK
Sbjct: 33  LMMNNPMTKKLHIKTWGCQMNEYDSSKMADLLASTHGYQLTTIPEEADLLLLNTCSIREK 92

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135
           A EKV+S LG+ + LK         L++ V GCVA  EGE++ +R+P V+V+ GPQT +R
Sbjct: 93  AQEKVFSLLGQWKLLKEK----NPQLIIGVGGCVASQEGEQLRQRAPCVDVIFGPQTLHR 148

Query: 136 LPELLERAR-FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCV 194
           LPE++   +     VVD  +   +KF+RL        R  G TAF++I EGC+K+CTFCV
Sbjct: 149 LPEMINHVQGTNSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTFCV 203

Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL 254
           VPYTRG E+SR    ++ E  +L   GV E+ LLGQNVNA+RG   DG+ C+F++LL  +
Sbjct: 204 VPYTRGEEVSRPSDDILFEIAQLAAQGVREVNLLGQNVNAYRGATYDGDICSFAELLRLV 263

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
           + I G+ R+R+TTSHP + +D +I  + D   L+ +LHLPVQSGSDRIL  M R HTA E
Sbjct: 264 AAIDGIDRVRFTTSHPIEFTDDIIDVYRDTPELVSFLHLPVQSGSDRILTMMKRAHTALE 323

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
           Y+ II ++R  RPDI ISSDFIVGFPGET  DF  TM LV  I +  ++SF YSPR GTP
Sbjct: 324 YKAIIRKLRQARPDIQISSDFIVGFPGETQQDFEQTMKLVADIHFDTSYSFIYSPRPGTP 383

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSP 433
            +++ + V E  K +RL  LQ+++ +Q +  +   VG +  VL+E   ++   +L GR+ 
Sbjct: 384 AADLPDNVSEEEKKQRLHILQQRISQQAMEISRKMVGTVQRVLVEGTSRKNVMELAGRTE 443

Query: 434 WLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
             + V        IG  + V I +V  S+L G L+
Sbjct: 444 NNRVVNFEGSPDMIGKFVDVEIVNVYASSLRGILL 478


>gi|320183045|gb|EFW57910.1| tRNA-i(6)A37 methylthiotransferase [Shigella flexneri CDC 796-83]
          Length = 474

 Score =  495 bits (1274), Expect = e-138,   Method: Composition-based stats.
 Identities = 196/449 (43%), Positives = 290/449 (64%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++  +K++GCQMN YDS +M D+  +  GY+  +  ++AD+++LNTC IREKA EKV+
Sbjct: 1   MTKKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTDVAEEADVLLLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR + LK        DL++ V GCVA  EGE I +R+  V+++ GPQT +RLPE++ 
Sbjct: 61  HQLGRWKLLKEK----NPDLIIGVGGCVASQEGEHIRQRAHYVDIIFGPQTLHRLPEMIN 116

Query: 142 RARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
             R  +  VVD  +   +KF+RL        R  G TAF++I EGC+K+CT+CVVPYTRG
Sbjct: 117 SVRGDRSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTYCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR    ++ E  +L   GV E+ LLGQNVNAWRG+  DG   +F+DLL  ++ I G+
Sbjct: 172 EEVSRPSDDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGSTGSFADLLRLVAAIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+TTSHP + +D +I+ + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II 
Sbjct: 232 DRIRFTTSHPIEFTDDIIEVYRDTPELVSFLHLPVQSGSDRILNLMGRTHTALEYKAIIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R+ RPDI ISSDFIVGFP ET +DF  TM L+  + +  ++SF +S R GTP ++M++
Sbjct: 292 KLRAARPDIQISSDFIVGFPSETTEDFEKTMKLIADVNFDMSYSFIFSARPGTPAADMVD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439
            V E  K +RL  LQ+++ +Q ++++   +G    +L+E   ++   +L GR+   + V 
Sbjct: 352 DVPEEEKKQRLYILQERINQQAMAWSRRMLGTTQRILVEGTSRKSIMELSGRTENNRVVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG  + V ITDV  ++L G++V
Sbjct: 412 FEGTPDMIGKFVDVEITDVYPNSLRGKVV 440


>gi|224582505|ref|YP_002636303.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella
           enterica subsp. enterica serovar Paratyphi C strain
           RKS4594]
 gi|224467032|gb|ACN44862.1| MiaB protein (putative tRNA-thiotransferase (or
           tRNA-methylthiotransferase)) [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
          Length = 488

 Score =  495 bits (1274), Expect = e-138,   Method: Composition-based stats.
 Identities = 198/449 (44%), Positives = 290/449 (64%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++  +K++GCQMN YDS +M D+  +  GY+  +  ++AD+++LNTC IREKA EKV+
Sbjct: 15  MTKKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTDVAEEADVLLLNTCSIREKAQEKVF 74

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR R LK        DL++ V GCVA  EGE I +R+  V+++ GPQT +RLPE++ 
Sbjct: 75  HQLGRWRLLKEK----NPDLIIGVGGCVASQEGEHIRQRAHYVDIIFGPQTLHRLPEMIN 130

Query: 142 RARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
             R  +  VVD  +   +KF+RL        R  G TAF++I EGC+K+CT+CVVPYTRG
Sbjct: 131 SVRGDRSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTYCVVPYTRG 185

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR    ++ E  +L   GV E+ LLGQNVNAWRG+  DG    F+DLL  ++ I G+
Sbjct: 186 EEVSRPSDDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTTGIFADLLRLVAAIDGI 245

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+TTSHP + +D +I+ + D   L+ +LHLPVQSGSDR+L  M R HTA EY+ II 
Sbjct: 246 DRIRFTTSHPIEFTDDIIEVYRDTPELVSFLHLPVQSGSDRVLNLMGRTHTALEYKAIIR 305

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R+ RPDI ISSDFIVGFPGET DDF  TM L+  + +  ++SF +S R GTP ++M++
Sbjct: 306 KLRAARPDIQISSDFIVGFPGETTDDFEKTMKLIADVNFDMSYSFIFSARPGTPAADMVD 365

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439
            V E  K +RL  LQ+++ +Q ++++   +G    +L+E   ++   +L GR+   + V 
Sbjct: 366 DVPEEEKKQRLYILQERINQQAMAWSRRMLGTTQRILVEGTSRKNIMELSGRTENNRVVN 425

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG  + V ITDV  ++L G++V
Sbjct: 426 FEGTPEMIGKFVDVEITDVYPNSLRGKVV 454


>gi|217979028|ref|YP_002363175.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Methylocella
           silvestris BL2]
 gi|217504404|gb|ACK51813.1| RNA modification enzyme, MiaB family [Methylocella silvestris BL2]
          Length = 490

 Score =  494 bits (1273), Expect = e-137,   Method: Composition-based stats.
 Identities = 247/459 (53%), Positives = 321/459 (69%)

Query: 9   GVAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLN 68
             A       D     ++ FV+S+GCQMNVYDS +M D+   +GY      +DADLI+LN
Sbjct: 12  NEARGAPAAEDSPPQERKLFVQSFGCQMNVYDSQKMTDLLGREGYGAAAGPEDADLIILN 71

Query: 69  TCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVV 128
           TCHIRE+A+EK++S LGR+R LK  R  EG    +VVAGCVAQAEG EI RR   V+VVV
Sbjct: 72  TCHIRERASEKIFSELGRLRELKALRAVEGRKTKIVVAGCVAQAEGAEIHRRQSAVDVVV 131

Query: 129 GPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
           GPQ+Y+RLPELL RA   K VVDTD+ VEDKF  L+       RKRGV+AF+T+QEGCDK
Sbjct: 132 GPQSYHRLPELLRRAEREKHVVDTDFPVEDKFGFLARPTPAETRKRGVSAFVTVQEGCDK 191

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS 248
           FCTFCVVPYTRG E SR ++ +++EA  L   GV E+TL+GQNVNA+ G    G +   +
Sbjct: 192 FCTFCVVPYTRGAEFSRPVAAILEEAAALTAAGVRELTLIGQNVNAYHGADGRGGEADLA 251

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
            L   L+   G+ R+RYTTSHP DM + LI+AH     LMP+LHLPVQSGSD +L +MNR
Sbjct: 252 ALCAELARASGVKRIRYTTSHPNDMGEALIEAHRAQPKLMPFLHLPVQSGSDAVLAAMNR 311

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
           +HT+  Y  +  RIR+ RPDIA+SSDFIVGFPGETD DF AT+ L++ +GYA AFSFKYS
Sbjct: 312 KHTSAGYIALCRRIRAARPDIALSSDFIVGFPGETDADFEATLQLIEDVGYASAFSFKYS 371

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL 428
           PR GTPG+   +Q+ E+VK+ERL  LQ  +  Q+ +FN A VG+ +EVLIE+ G+  G++
Sbjct: 372 PRPGTPGAERTDQIAEDVKSERLARLQALIESQRQAFNRAMVGRTVEVLIERRGRHPGQI 431

Query: 429 VGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
            G+SP+LQ+V L   +  IG+ + V I     ++L+G+L
Sbjct: 432 AGKSPYLQAVQLEGGDELIGESVAVEIVATGPNSLFGKL 470


>gi|145298103|ref|YP_001140944.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Aeromonas
           salmonicida subsp. salmonicida A449]
 gi|229890493|sp|A4SJX4|MIAB_AERS4 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|142850875|gb|ABO89196.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Aeromonas salmonicida
           subsp. salmonicida A449]
          Length = 477

 Score =  494 bits (1273), Expect = e-137,   Method: Composition-based stats.
 Identities = 200/449 (44%), Positives = 285/449 (63%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++  +K++GCQMN YDS +M D+   S GY      ++AD+++LNTC IREKA EKV+
Sbjct: 1   MSKKLHIKTWGCQMNEYDSSKMADLLDASNGYTLTEEPEEADVLLLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR + LK +       L++ V GCVA  EGE I  R+P V++V GPQT +RLP +++
Sbjct: 61  HQLGRWKKLKAN----KPGLVIGVGGCVASQEGENIRSRAPYVDIVFGPQTLHRLPAMIK 116

Query: 142 RARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           + + G+   VD  +   +KF+ L        R  G TAF++I EGC K+C+FCVVPYTRG
Sbjct: 117 QVQEGRGAQVDIAFPEIEKFDSLP-----EPRAEGATAFVSIMEGCSKYCSFCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR +  V+ E  +L + GV E+ LLGQNVNA+RG   DG  C+F++LL  ++ I G+
Sbjct: 172 EEVSRPMDDVLYEIAQLAEQGVREVNLLGQNVNAYRGPTFDGSICSFAELLRLVAAIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+RYTTSHP + +D +I+ + D   ++ +LHLPVQSGSDRIL  M R HT  EY+  I 
Sbjct: 232 DRIRYTTSHPIEFTDDIIEVYKDTPEVVSFLHLPVQSGSDRILTMMKRPHTVLEYKSKIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           R+R+ RPDI ISSDFIVGFP ETD+DF ATM L+++I +  +FSF YSPR GTP ++M +
Sbjct: 292 RLRAARPDITISSDFIVGFPNETDEDFEATMKLIEEINFDMSFSFIYSPRPGTPAADMPD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVV 439
            VD  VK  RL  LQ  +  Q +    A +G    +L+E   + +  +L GR+   + V 
Sbjct: 352 DVDMEVKKVRLARLQHVINNQSMQIGRAMLGSTQRILVEGPSRLDPMQLCGRTENNRVVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
               +  IG    V IT+V+ ++L G  +
Sbjct: 412 FEGAHTLIGGFADVEITEVRPNSLRGRFI 440


>gi|254511318|ref|ZP_05123385.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Rhodobacteraceae
           bacterium KLH11]
 gi|221535029|gb|EEE38017.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Rhodobacteraceae
           bacterium KLH11]
          Length = 439

 Score =  494 bits (1273), Expect = e-137,   Method: Composition-based stats.
 Identities = 249/445 (55%), Positives = 321/445 (72%), Gaps = 9/445 (2%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P++ F+K+YGCQMNVYDS RM +    QGY    S DDAD+I+LNTCHIREKAAEKVYS 
Sbjct: 4   PKKLFIKTYGCQMNVYDSERMAEALGGQGYVETKSPDDADMILLNTCHIREKAAEKVYSE 63

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK        DL + VAGCVAQAEGEEI+RR P+V++VVGPQ+Y+RLPE+  + 
Sbjct: 64  LGRFKGLKAE----KPDLKIGVAGCVAQAEGEEIMRRQPLVDLVVGPQSYHRLPEMEAKT 119

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           R G++ +DTD+  EDKFE+L         KRG TAFLT+QEGCDKFC FCVVPYTRG E+
Sbjct: 120 RGGEKALDTDFPEEDKFEKLKSRP---KAKRGPTAFLTVQEGCDKFCAFCVVPYTRGAEV 176

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR   +++ EA+ L++ GV EITLLGQNVNA+ G G DG+  T + L++ L+++ GL R+
Sbjct: 177 SRPADRIIREAQDLVERGVREITLLGQNVNAYHGAGPDGD-MTLAALIWELNKVDGLERI 235

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+TTSHP DM D LI+AHG  D LMPYLHLPVQSGSDR+LK MNR HTA  Y ++I+RIR
Sbjct: 236 RFTTSHPNDMDDALIEAHGTCDKLMPYLHLPVQSGSDRVLKRMNRSHTAESYLRLIERIR 295

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
             RPDI +S DFIVGFP ETD+DF+AT+DLV+++ Y  A+SFKYS R GTP +    QV+
Sbjct: 296 EARPDILMSGDFIVGFPEETDEDFQATLDLVEEVKYGYAYSFKYSTRPGTPAAERP-QVE 354

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
             V  ERL  LQ  +   Q    DA VGQ + VL EK G++ G++VG+S +L +V ++  
Sbjct: 355 AEVADERLQRLQAMITRHQREIQDAMVGQTVSVLFEKPGRQPGQMVGKSEYLHAVHVSDT 414

Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468
           +   GD+ KV+IT    ++L G L+
Sbjct: 415 DVEAGDLRKVKITASGANSLGGALI 439


>gi|283784432|ref|YP_003364297.1| isopentenyl-adenosine A37 tRNA methylthiolase [Citrobacter
           rodentium ICC168]
 gi|282947886|emb|CBG87448.1| isopentenyl-adenosine A37 tRNA methylthiolase [Citrobacter
           rodentium ICC168]
          Length = 474

 Score =  494 bits (1272), Expect = e-137,   Method: Composition-based stats.
 Identities = 196/449 (43%), Positives = 290/449 (64%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++  +K++GCQMN YDS +M D+  +  GY+  +  ++AD+++LNTC IREKA EKV+
Sbjct: 1   MTKKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTDVAEEADVLLLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR + LK        DL++ V GCVA  EG+ I +R+  V+++ GPQT +RLPE++ 
Sbjct: 61  HQLGRWKLLKEK----NPDLIIGVGGCVASQEGDHIRQRAHYVDIIFGPQTLHRLPEMIN 116

Query: 142 RARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
             R  +  VVD  +   +KF+RL        R  G TAF++I EGC+K+CT+CVVPYTRG
Sbjct: 117 SVRGNRSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTYCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR    ++ E  +L   GV E+ LLGQNVNAWRG+  DG   +F+DLL  ++ I G+
Sbjct: 172 EEVSRPSDDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTTGSFADLLRLVAAIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+TTSHP + +D +I+ + D   L+ +LHLPVQSGSDR+L  M R HTA EY+ II 
Sbjct: 232 DRIRFTTSHPIEFTDDIIEVYRDTPELVSFLHLPVQSGSDRVLNLMGRTHTALEYKAIIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R+ RPDI ISSDFIVGFPGET  DF  TM L+  + +  ++SF +S R GTP ++M++
Sbjct: 292 KLRAARPDIQISSDFIVGFPGETTQDFEQTMKLIADVNFDMSYSFIFSARPGTPAADMVD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439
            V E  K +RL  LQ ++ +Q ++++   +G I  +L+E   ++   +L GR+   + V 
Sbjct: 352 DVPEEEKKQRLYILQDRINQQAMAWSRRMLGTIQRILVEGTSRKSIMELSGRTENNRVVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG  + V ITDV  ++L G++V
Sbjct: 412 FEGSPEMIGKFVDVEITDVWTNSLRGKVV 440


>gi|22125098|ref|NP_668521.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Yersinia
           pestis KIM 10]
 gi|21957953|gb|AAM84772.1|AE013722_11 hypothetical protein y1195 [Yersinia pestis KIM 10]
          Length = 512

 Score =  494 bits (1272), Expect = e-137,   Method: Composition-based stats.
 Identities = 202/455 (44%), Positives = 287/455 (63%), Gaps = 12/455 (2%)

Query: 17  IVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREK 75
           ++    + ++  +K++GCQMN YDS +M D+  S  GY+     ++ADL++LNTC IREK
Sbjct: 33  LMMNNPMTKKLHIKTWGCQMNEYDSSKMADLLASTHGYQLTTIPEEADLLLLNTCSIREK 92

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135
           A EKV+S LG+ + LK         L++ V GCVA  EGE++ +R+P V+V+ GPQT +R
Sbjct: 93  AQEKVFSLLGQWKLLKEK----NPQLIIGVGGCVASQEGEQLRQRAPCVDVIFGPQTLHR 148

Query: 136 LPELLERAR-FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCV 194
           LPE++   +     VVD  +   +KF+RL        R  G TAF++I EGC+K+CTFCV
Sbjct: 149 LPEMINHVQGTNSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTFCV 203

Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL 254
           VPYTRG E+SR    ++ E  +L   GV E+ LLGQNVNA+RG   DG+ C+F++LL  +
Sbjct: 204 VPYTRGEEVSRPSDDILFEIAQLAAQGVREVNLLGQNVNAYRGATYDGDICSFAELLRLV 263

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
           + I G+ R+R+TTSHP + +D +I  + D   L+ +LHLPVQSGSDRIL  M R HTA E
Sbjct: 264 AAIDGIDRVRFTTSHPIEFTDDIIDVYRDTPELVSFLHLPVQSGSDRILTMMKRAHTALE 323

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
           Y+ II ++R  RPDI ISSDFIVGFPGET  DF  TM LV  I +  ++SF YSPR GTP
Sbjct: 324 YKAIIRKLRQARPDIQISSDFIVGFPGETQQDFEQTMKLVADIHFDTSYSFIYSPRPGTP 383

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSP 433
            +++   V E  K +RL  LQ+++ +Q +  +   VG +  VL+E   ++   +L GR+ 
Sbjct: 384 AADLPNNVSEEEKKQRLHILQQRISQQAMEISRKMVGTVQRVLVEGTSRKNVMELAGRTE 443

Query: 434 WLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
             + V        IG  + V I +V  S+L G L+
Sbjct: 444 NNRVVNFEGSPDMIGKFVDVEIVNVYASSLRGILL 478


>gi|291085698|ref|ZP_06353781.2| tRNA-I(6)A37 thiotransferase enzyme MiaB [Citrobacter youngae ATCC
           29220]
 gi|291070181|gb|EFE08290.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Citrobacter youngae ATCC
           29220]
          Length = 490

 Score =  494 bits (1271), Expect = e-137,   Method: Composition-based stats.
 Identities = 192/451 (42%), Positives = 290/451 (64%), Gaps = 14/451 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++  +K++GCQMN YDS +M D+  +  GY+  +  ++AD+++LNTC IREKA EKV+
Sbjct: 15  MTKKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTDVAEEADVLLLNTCSIREKAQEKVF 74

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR + LK        +L++ V GCVA  EG+ I +R+  V+++ GPQT +RLPE++ 
Sbjct: 75  HQLGRWKLLKEK----NPNLIIGVGGCVASQEGDHIRQRAHYVDIIFGPQTLHRLPEMIN 130

Query: 142 RARFG---KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
           + R       VVD  +   +KF+RL        R  G +AF++I EGC+K+CT+CVVPYT
Sbjct: 131 KVRGSTSRSPVVDISFPEIEKFDRLP-----EPRAEGPSAFVSIMEGCNKYCTYCVVPYT 185

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258
           RG E+SR    ++ E  +L   GV E+ LLGQNVNAWRG+  DG   +F+DLL  ++ I 
Sbjct: 186 RGEEVSRPADDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTTGSFADLLRLVAAID 245

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           G+ R+R+TTSHP + +D +++ + D   L+ +LHLPVQSGSDR+L  M R HTA EY+ I
Sbjct: 246 GIDRIRFTTSHPIEFTDDIVEVYRDTPELVSFLHLPVQSGSDRVLNLMGRTHTALEYKAI 305

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           I ++R+ RPDI ISSDFIVGFPGET  DF  TM L+  + +  ++SF +S R GTP ++M
Sbjct: 306 IRKLRAARPDIQISSDFIVGFPGETTQDFEQTMKLIADVNFDMSYSFIFSARPGTPAADM 365

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQS 437
           ++ V E  K +RL  LQ+++ +Q ++++   VG    +L+E   ++   +L GR+   + 
Sbjct: 366 VDDVPEEEKKQRLYILQERINQQAMAWSRRMVGTTQRILVEGTSRKSIMELSGRTENNRV 425

Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           V        +G  + V ITDV  ++L G++V
Sbjct: 426 VNFEGAPEMVGKFVDVEITDVWTNSLRGKVV 456


>gi|269102017|ref|ZP_06154714.1| tRNA-i(6)A37 methylthiotransferase [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268161915|gb|EEZ40411.1| tRNA-i(6)A37 methylthiotransferase [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 474

 Score =  494 bits (1271), Expect = e-137,   Method: Composition-based stats.
 Identities = 201/449 (44%), Positives = 290/449 (64%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++  +K++GCQMN YDS +M D+   + G+E     ++AD+++LNTC IREKA EKV+
Sbjct: 1   MAKKLLIKTWGCQMNEYDSSKMADLLNAANGFELTEDPEEADVLLLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR + LK+        L++ V GCVA  EG+ I +R+P V+V+ GPQT +RLPE+++
Sbjct: 61  HQLGRWKTLKDK----KPGLVIGVGGCVATQEGDSIRQRAPYVDVIFGPQTLHRLPEMIK 116

Query: 142 RARFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           +++  +  V+D  +   +KF+ L        R  G TAF++I EGC K+CT+CVVPYTRG
Sbjct: 117 QSQSTEAPVMDISFPEIEKFDSLP-----EPRAEGPTAFVSIMEGCSKYCTYCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR L  V+ E  +L   GV E+ LLGQNVNA+RG   DGE  TF++LL  ++ I G+
Sbjct: 172 EEVSRPLDDVLFEIAQLAAQGVREVNLLGQNVNAYRGATYDGEIATFAELLRLVAAIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+RYTTSHP + +D +I+ + D   L+ +LHLPVQSGSDRIL  M R HTA EY+  I 
Sbjct: 232 DRIRYTTSHPIEFTDDIIEVYQDTPELVSFLHLPVQSGSDRILTMMKRPHTAIEYKSKIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R  RPDI ISSDFIVGFPGE+D DF+ TM L+  + +  +FSF +SPR GTP ++   
Sbjct: 292 KLRKARPDITISSDFIVGFPGESDQDFQDTMKLIRDVDFDMSFSFIFSPRPGTPAADYPC 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439
            + E VK ERL  LQ+++  Q + F+   +G    +L+E   K+   +L GR+   + V 
Sbjct: 352 DLTEEVKKERLYELQQQINSQAMRFSRQMLGTEQRILVEGPSKKNVMELRGRTENNRVVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG  + V+ITDV  ++L GEL+
Sbjct: 412 FEGSADLIGQFVDVKITDVFANSLRGELI 440


>gi|260431178|ref|ZP_05785149.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260415006|gb|EEX08265.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 439

 Score =  494 bits (1271), Expect = e-137,   Method: Composition-based stats.
 Identities = 246/445 (55%), Positives = 321/445 (72%), Gaps = 9/445 (2%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P++ ++K+YGCQMNVYDS RM +    QGY    S +DAD+I+LNTCHIREKAAEKVYS 
Sbjct: 4   PKKLYIKTYGCQMNVYDSERMSEALGGQGYVETQSPEDADMILLNTCHIREKAAEKVYSE 63

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK        DL + VAGCVAQAEGEEI+RR P+V++VVGPQ+Y+RLPEL  +A
Sbjct: 64  LGRFKGLKAE----KPDLKIGVAGCVAQAEGEEIMRRQPLVDLVVGPQSYHRLPELEAKA 119

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           R G++ +DTD+  EDKFE+L         KRG TAFLT+QEGCDKFC FCVVPYTRG E+
Sbjct: 120 RAGEKALDTDFPEEDKFEKLK---NRPKAKRGPTAFLTVQEGCDKFCAFCVVPYTRGAEV 176

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR   +++ EA+ L++ GV EITLLGQNVNA+ G G +G+  T + L++ L+ I GL R+
Sbjct: 177 SRPADRILREAQDLVERGVREITLLGQNVNAYHGAGPNGD-MTLAGLIWELNRIDGLERI 235

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+TTSHP DM+D LI+AHG  + LMPYLHLPVQSGSDRILK MNR HTA  Y ++I+RIR
Sbjct: 236 RFTTSHPNDMTDDLIEAHGTCEKLMPYLHLPVQSGSDRILKRMNRSHTAESYLRLIERIR 295

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
             RPDI +S DFIVGFP ET++DF+AT+DLV+++ Y  A+SFKYS R GTP +    QVD
Sbjct: 296 EARPDILMSGDFIVGFPEETEEDFQATLDLVEEVRYGYAYSFKYSTRPGTPAAERP-QVD 354

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
                +RL  LQ  +   Q    DA VG+ ++VL EK G+  G++VG+S +L +V + ++
Sbjct: 355 PQAADDRLQRLQAVITRHQREIQDAMVGRTVKVLFEKPGRLPGQMVGKSEYLHAVHVKAE 414

Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468
               GD+  VR+T    ++L GEL+
Sbjct: 415 GLGAGDLRSVRVTASGANSLAGELI 439


>gi|260914514|ref|ZP_05920983.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Pasteurella dagmatis ATCC
           43325]
 gi|260631615|gb|EEX49797.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Pasteurella dagmatis ATCC
           43325]
          Length = 474

 Score =  494 bits (1271), Expect = e-137,   Method: Composition-based stats.
 Identities = 207/449 (46%), Positives = 294/449 (65%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + Q+  +K++GCQMN YDS +M D+  S  G E  +  ++AD+++LNTC IREKA EKV+
Sbjct: 1   MTQKLHIKTWGCQMNEYDSSKMADLLNSTHGLELTDIPEEADVLLLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR + LK    K    L++ V GCVA  EGE I  R+P V+++ GPQT +RLPE++ 
Sbjct: 61  HQLGRWKELK----KHKPGLVIGVGGCVASQEGEHIRTRAPYVDIIFGPQTLHRLPEMIN 116

Query: 142 RARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           + R GK  VVD  +   +KF+RL        R  G TAF++I EGC+K+C+FCVVPYTRG
Sbjct: 117 QIRGGKSSVVDVSFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCSFCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR +  V+ E  +L + GV E+ LLGQNVNA+RG   D   CTF++LL  ++ I G+
Sbjct: 172 EEVSRPVDDVLFEIAQLAEQGVREVNLLGQNVNAYRGATHDDGICTFAELLRLVAAIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            RLR+TTSHP + +D +I  + D   L+ +LHLPVQSGSDR+L  M R HTA EY+ II 
Sbjct: 232 DRLRFTTSHPIEFTDDIIDVYRDTPELVSFLHLPVQSGSDRVLSMMKRNHTALEYKSIIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R+VRP+I ISSDFIVGFPGET +DF  TM+L+ ++ +  +FSF YS R GTP ++M +
Sbjct: 292 KLRAVRPEIQISSDFIVGFPGETAEDFEQTMNLIAQVNFDMSFSFIYSARPGTPAADMPD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439
            V E+ K +RL  LQ+++  Q   F+ A +G    VL+E   K+   +L GR+   + V 
Sbjct: 352 DVSEDEKKQRLYVLQQRINNQAAQFSRAMLGTEQRVLVEGPSKKDLMELTGRTETNRIVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG  + ++ITDV  ++L G++V
Sbjct: 412 FVGTPDMIGKFVDIKITDVFTNSLRGDVV 440


>gi|51595460|ref|YP_069651.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Yersinia
           pseudotuberculosis IP 32953]
 gi|153950190|ref|YP_001401877.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Yersinia
           pseudotuberculosis IP 31758]
 gi|81640093|sp|Q66DD3|MIAB_YERPS RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|229891036|sp|A7FKU9|MIAB_YERP3 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|229891221|sp|B2K896|MIAB_YERPB RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|51588742|emb|CAH20353.1| putative tRNA-thiotransferase [Yersinia pseudotuberculosis IP
           32953]
 gi|152961685|gb|ABS49146.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Yersinia
           pseudotuberculosis IP 31758]
          Length = 474

 Score =  493 bits (1270), Expect = e-137,   Method: Composition-based stats.
 Identities = 202/449 (44%), Positives = 286/449 (63%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++  +K++GCQMN YDS +M D+  S  GY+     ++ADL++LNTC IREKA EKV+
Sbjct: 1   MTKKLHIKTWGCQMNEYDSSKMADLLASTHGYQLTTIPEEADLLLLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S LG+ + LK         L++ V GCVA  EGE++ +R+P V+V+ GPQT +RLPE++ 
Sbjct: 61  SLLGQWKLLKEK----NPQLIIGVGGCVASQEGEQLRQRAPCVDVIFGPQTLHRLPEMIN 116

Query: 142 RAR-FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
             +     VVD  +   +KF+RL        R  G TAF++I EGC+K+CTFCVVPYTRG
Sbjct: 117 HVQGTNSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTFCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR    ++ E  +L   GV E+ LLGQNVNA+RG   DG+ C+F++LL  ++ I G+
Sbjct: 172 EEVSRPSDDILFEIAQLAAQGVREVNLLGQNVNAYRGATYDGDICSFAELLRLVAAIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+TTSHP + +D +I  + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II 
Sbjct: 232 DRIRFTTSHPIEFTDDIIDVYRDTPELVSFLHLPVQSGSDRILTMMKRAHTALEYKAIIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R  RPDI ISSDFIVGFPGET  DF  TM LV  I +  ++SF YSPR GTP +++ +
Sbjct: 292 KLRQARPDIQISSDFIVGFPGETQQDFEQTMKLVADIHFDTSYSFIYSPRPGTPAADLPD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439
            V E  K +RL  LQ+++ +Q +  +   VG +  VL+E   ++   +L GR+   + V 
Sbjct: 352 NVSEEEKKQRLHILQQRISQQAMEISRKMVGTVQRVLVEGTSRKNVMELAGRTENNRVVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG  + V I +V  S+L G L+
Sbjct: 412 FEGSPDMIGKFVDVEIVNVYASSLRGILL 440


>gi|145599895|ref|YP_001163971.1| tRNA-thiotransferase [Yersinia pestis Pestoides F]
 gi|145211591|gb|ABP40998.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Yersinia pestis Pestoides
           F]
          Length = 479

 Score =  493 bits (1270), Expect = e-137,   Method: Composition-based stats.
 Identities = 202/450 (44%), Positives = 286/450 (63%), Gaps = 12/450 (2%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKV 80
            + ++  +K++GCQMN YDS +M D+  S  GY+     ++ADL++LNTC IREKA EKV
Sbjct: 5   PMTKKLHIKTWGCQMNEYDSSKMADLLASTHGYQLTTIPEEADLLLLNTCSIREKAQEKV 64

Query: 81  YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140
           +S LG+ + LK         L++ V GCVA  EGE++ +R+P V+V+ GPQT +RLPE++
Sbjct: 65  FSLLGQWKLLKEK----NPQLIIGVGGCVASQEGEQLRQRAPCVDVIFGPQTLHRLPEMI 120

Query: 141 ERAR-FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
              +     VVD  +   +KF+RL        R  G TAF++I EGC+K+CTFCVVPYTR
Sbjct: 121 NHVQGTNSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTFCVVPYTR 175

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G E+SR    ++ E  +L   GV E+ LLGQNVNA+RG   DG+ C+F++LL  ++ I G
Sbjct: 176 GEEVSRPSDDILFEIAQLAAQGVREVNLLGQNVNAYRGATYDGDICSFAELLRLVAAIDG 235

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           + R+R+TTSHP + +D +I  + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II
Sbjct: 236 IDRVRFTTSHPIEFTDDIIDVYRDTPELVSFLHLPVQSGSDRILTMMKRAHTALEYKAII 295

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            ++R  RPDI ISSDFIVGFPGET  DF  TM LV  I +  ++SF YSPR GTP +++ 
Sbjct: 296 RKLRQARPDIQISSDFIVGFPGETQQDFEQTMKLVADIHFDTSYSFIYSPRPGTPAADLP 355

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSV 438
           + V E  K +RL  LQ+++ +Q +  +   VG +  VL+E   ++   +L GR+   + V
Sbjct: 356 DNVSEEEKKQRLHILQQRISQQAMEISRKMVGTVQRVLVEGTSRKNVMELAGRTENNRVV 415

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468
                   IG  + V I +V  S+L G L+
Sbjct: 416 NFEGSPDMIGKFVDVEIVNVYASSLRGILL 445


>gi|237730638|ref|ZP_04561119.1| MiaB protein [Citrobacter sp. 30_2]
 gi|226906177|gb|EEH92095.1| MiaB protein [Citrobacter sp. 30_2]
          Length = 490

 Score =  493 bits (1270), Expect = e-137,   Method: Composition-based stats.
 Identities = 192/451 (42%), Positives = 289/451 (64%), Gaps = 14/451 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++  +K++GCQMN YDS +M D+  +  GY+  +  ++AD+++LNTC IREKA EKV+
Sbjct: 15  MTKKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTDVAEEADVLLLNTCSIREKAQEKVF 74

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR + LK         L++ V GCVA  EG+ I +R+  V+++ GPQT +RLPE++ 
Sbjct: 75  HQLGRWKLLKEK----NPKLIIGVGGCVASQEGDHIRQRAHYVDIIFGPQTLHRLPEMIN 130

Query: 142 RARFG---KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
           + R       VVD  +   +KF+RL        R  G +AF++I EGC+K+CT+CVVPYT
Sbjct: 131 KVRGSTTRSPVVDISFPEIEKFDRLP-----EPRAEGPSAFVSIMEGCNKYCTYCVVPYT 185

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258
           RG E+SR    ++ E  +L   GV E+ LLGQNVNAWRG+  DG   +F+DLL  ++ I 
Sbjct: 186 RGEEVSRPADDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTIGSFADLLRLVAAID 245

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           G+ R+R+TTSHP + +D +++ + D   L+ +LHLPVQSGSDR+L  M R HTA EY+ I
Sbjct: 246 GIDRIRFTTSHPIEFTDDIVEVYRDTPELVSFLHLPVQSGSDRVLNLMGRTHTALEYKAI 305

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           I ++R+ RPDI ISSDFIVGFPGET  DF  TM L+  + +  ++SF +S R GTP ++M
Sbjct: 306 IRKLRAARPDIQISSDFIVGFPGETTQDFEQTMKLIADVNFDMSYSFIFSARPGTPAADM 365

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQS 437
           ++ V E  K +RL  LQ+++ +Q ++++   VG    +L+E   ++   +L GR+   + 
Sbjct: 366 VDDVPEEEKKQRLYILQERINQQAMAWSRRMVGTTQRILVEGTSRKSIMELSGRTENNRV 425

Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           V        +G  + V ITDV  ++L G++V
Sbjct: 426 VNFEGNPDMVGKFVDVEITDVWTNSLRGKVV 456


>gi|295687475|ref|YP_003591168.1| MiaB family RNA modification enzyme [Caulobacter segnis ATCC 21756]
 gi|295429378|gb|ADG08550.1| RNA modification enzyme, MiaB family [Caulobacter segnis ATCC
           21756]
          Length = 448

 Score =  493 bits (1269), Expect = e-137,   Method: Composition-based stats.
 Identities = 254/449 (56%), Positives = 323/449 (71%), Gaps = 14/449 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +R F+K+YGCQMNVYDS RM D+    GY  V+  + ADL+VLNTCHIREKA EKVYS L
Sbjct: 7   KRLFIKTYGCQMNVYDSERMADVLRPLGYGVVDDPEGADLVVLNTCHIREKATEKVYSEL 66

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           G I+ +K+ + + GG + + VAGCVAQAEG+EI+ R   V++VVGPQ Y++LPEL+ RA 
Sbjct: 67  GYIKQMKDRKAEAGGRMTIAVAGCVAQAEGKEIMHRQKAVDLVVGPQAYHQLPELIARAH 126

Query: 145 --FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
              G+R +  D++ ++KF+ L           GVTAFLT+QEGCDKFCTFCVVPYTRG E
Sbjct: 127 RATGER-LAADFAADEKFDALP----AERHVTGVTAFLTVQEGCDKFCTFCVVPYTRGGE 181

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR ++ +V+EA++L D GV E+TLLGQNVNA+     DG+  T + L+  L+ I GL R
Sbjct: 182 WSRPVNDIVEEAKRLADQGVREVTLLGQNVNAY-----DGDGSTLAKLVRQLARIDGLDR 236

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +RYTTSHPRDM D LI+AHG+L  LMPYLHLPVQ+G DRILK+MNR HTA  Y ++I+RI
Sbjct: 237 IRYTTSHPRDMGDDLIEAHGELPELMPYLHLPVQAGGDRILKAMNRDHTAESYVRLIERI 296

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+ RPDIA+S DFIVGFPGE D DF  T+DLV ++G+A AFSFKYS R GTP S M  QV
Sbjct: 297 RAARPDIAMSGDFIVGFPGERDGDFEKTLDLVREVGFASAFSFKYSRRPGTPASAMPGQV 356

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
           +E VKAERL  L + L EQQ +FN A VG+++ VL EK G+  G++VGRSP+LQ+V    
Sbjct: 357 EEEVKAERLERLNQLLDEQQRAFNAAQVGKVLPVLFEKPGRHAGQIVGRSPYLQAVHCEG 416

Query: 443 KNHNIGDIIKVRITDVKISTLYG--ELVV 469
               IG I+ VRI      +L G  E V+
Sbjct: 417 GEQLIGKIVPVRIESAAKMSLGGALEPVL 445


>gi|162421780|ref|YP_001606317.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Yersinia pestis Angola]
 gi|162354595|gb|ABX88543.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Yersinia pestis Angola]
          Length = 482

 Score =  493 bits (1269), Expect = e-137,   Method: Composition-based stats.
 Identities = 202/455 (44%), Positives = 288/455 (63%), Gaps = 12/455 (2%)

Query: 17  IVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREK 75
           ++    + ++  +K++GCQMN YDS +M D+  S  GY+     ++ADL++LNTC IREK
Sbjct: 3   LMMNNPMTKKLHIKTWGCQMNEYDSSKMADLLASTHGYQLTTIPEEADLLLLNTCSIREK 62

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135
           A EKV+S LG+ + LK         L++ V GCVA  EGE++ +R+P V+V+ GPQT +R
Sbjct: 63  AQEKVFSLLGQWKLLKEK----NPQLIIGVGGCVASQEGEQLRQRAPCVDVIFGPQTLHR 118

Query: 136 LPELLERAR-FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCV 194
           LPE++   +     VVD  +   +KF+RL        R  G TAF++I EGC+K+CTFCV
Sbjct: 119 LPEMINHVQGTNSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTFCV 173

Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL 254
           VPYTRG E+SR    ++ E  +L   GV E+ LLGQNVNA+RG   DG+ C+F++LL  +
Sbjct: 174 VPYTRGEEVSRPSDDILFEIAQLAAQGVREVNLLGQNVNAYRGATYDGDICSFAELLRLV 233

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
           + I G+ R+R+TTSHP + +D +I  + D   L+ +LHLPVQSGSDRIL  M R HTA E
Sbjct: 234 AAIDGIDRVRFTTSHPIEFTDDIIDVYRDTPELVSFLHLPVQSGSDRILTMMKRAHTALE 293

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
           Y+ II ++R  RPDI ISSDFIVGFPGET  DF  TM LV  I +  ++SF YSPR GTP
Sbjct: 294 YKAIIRKLRQARPDIQISSDFIVGFPGETQQDFEQTMKLVADIHFDTSYSFIYSPRPGTP 353

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSP 433
            +++ + V E  K +RL  LQ+++ +Q +  +   VG +  VL+E   ++   +L GR+ 
Sbjct: 354 AADLPDNVSEEEKKQRLHILQQRISQQAMEISRKMVGTVQRVLVEGTSRKNVMELAGRTE 413

Query: 434 WLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
             + V        IG  + V I +V  S+L G L+
Sbjct: 414 NNRVVNFEGSPDMIGKFVDVEIVNVYASSLRGILL 448


>gi|229891216|sp|B1JG95|MIAB_YERPY RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
          Length = 474

 Score =  493 bits (1269), Expect = e-137,   Method: Composition-based stats.
 Identities = 202/449 (44%), Positives = 285/449 (63%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++  +K++GCQMN YDS +M D+  S  GY+     ++ADL++LNTC IREKA EKV+
Sbjct: 1   MTKKLHIKTWGCQMNEYDSSKMADLLASTHGYQLTTIPEEADLLLLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S LG+ + LK         L++ V GCVA  EGE++ +R+P V+V+ GPQT +RLPE++ 
Sbjct: 61  SLLGQWKLLKEK----NPQLIIGVGGCVASQEGEQLRQRAPCVDVIFGPQTLHRLPEMIN 116

Query: 142 RA-RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
                   VVD  +   +KF+RL        R  G TAF++I EGC+K+CTFCVVPYTRG
Sbjct: 117 HVQETNSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTFCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR    ++ E  +L   GV E+ LLGQNVNA+RG   DG+ C+F++LL  ++ I G+
Sbjct: 172 EEVSRPSDDILFEIAQLAAQGVREVNLLGQNVNAYRGATYDGDICSFAELLRLVAAIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+TTSHP + +D +I  + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II 
Sbjct: 232 DRIRFTTSHPIEFTDDIIDVYRDTPELVSFLHLPVQSGSDRILTMMKRAHTALEYKAIIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R  RPDI ISSDFIVGFPGET  DF  TM LV  I +  ++SF YSPR GTP +++ +
Sbjct: 292 KLRQARPDIQISSDFIVGFPGETQQDFEQTMKLVADIHFDTSYSFIYSPRPGTPAADLPD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439
            V E  K +RL  LQ+++ +Q +  +   VG +  VL+E   ++   +L GR+   + V 
Sbjct: 352 NVSEEEKKQRLHILQQRISQQAMEISRKMVGTVQRVLVEGTSRKNVMELAGRTENNRVVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG  + V I +V  S+L G L+
Sbjct: 412 FEGSPDMIGKFVDVEIVNVYASSLRGILL 440


>gi|88860583|ref|ZP_01135221.1| Fe-S protein [Pseudoalteromonas tunicata D2]
 gi|88817781|gb|EAR27598.1| Fe-S protein [Pseudoalteromonas tunicata D2]
          Length = 476

 Score =  493 bits (1269), Expect = e-137,   Method: Composition-based stats.
 Identities = 203/449 (45%), Positives = 295/449 (65%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++  +K++GCQMN YDS +M D+  +  GY+     ++AD+I+LNTC IREKA EKV+
Sbjct: 1   MSKKLHIKTWGCQMNEYDSQKMADLLDATNGYQLTEEAENADVILLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR + LK+    +  DL++ V GCVA  EGE I +R+P V++V GPQT +RLPE+++
Sbjct: 61  HQLGRWKLLKD----DNPDLVIGVGGCVASQEGEVIRQRAPFVDIVFGPQTLHRLPEMIK 116

Query: 142 RARFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           + +  +  VVD  +   +KF+RL        +  G +AF++I EGC K+CTFCVVPYTRG
Sbjct: 117 QVQLKQGAVVDISFPEIEKFDRLP-----EPKAEGPSAFVSIMEGCSKYCTFCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR L  V+ E  +L + GV E+ LLGQNVNA+RGK  DGE C FSDLL  ++ I G+
Sbjct: 172 EEVSRPLDDVILEIAQLAEQGVREVNLLGQNVNAYRGKMHDGEICYFSDLLRYVATIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+RYTTSHP + +  +I+A+ D+  L+ +LHLPVQSGSDRIL  M R HTA EY+  I 
Sbjct: 232 DRIRYTTSHPIEFTPDIIEAYADIPELVDHLHLPVQSGSDRILALMKRGHTALEYKSTIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           +++ VRP++++SSDFI+GFPGET  DF ATM+L++ IG+  +FSF YS R GTP +++ +
Sbjct: 292 KLKKVRPNLSMSSDFIIGFPGETTADFEATMNLINDIGFDMSFSFIYSARPGTPAADLPD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439
            V E  K ERL  LQ ++ +     +    G    +L+E   K+   +L GR+   + V 
Sbjct: 352 DVSEQEKKERLYILQNRITQFAQQISRQMFGTEQRILVEGPSKKNPMELRGRTENNRVVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
               +  IG  + V+IT+   ++L G+LV
Sbjct: 412 FVGDHKLIGQFVDVKITEALPNSLRGDLV 440


>gi|187733108|ref|YP_001879330.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Shigella
           boydii CDC 3083-94]
 gi|229890659|sp|B2TU59|MIAB_SHIB3 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|187430100|gb|ACD09374.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Shigella boydii CDC
           3083-94]
          Length = 474

 Score =  493 bits (1269), Expect = e-137,   Method: Composition-based stats.
 Identities = 196/449 (43%), Positives = 290/449 (64%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++  +K++GCQMN YDS +M D+  +   Y+  +  ++AD+++LNTC IREKA EKV+
Sbjct: 1   MTKKLHIKTWGCQMNEYDSSKMADLLDATHSYQLTDVAEEADVLLLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR + LK        DL++ V GCVA  EGE I +R+  V+++ GPQT +RLPE++ 
Sbjct: 61  HQLGRWKLLKEK----NPDLIIGVGGCVASQEGEHIRQRAHYVDIIFGPQTLHRLPEMIN 116

Query: 142 RARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
             R  +  VVD  +   +KF+RL        R  G TAF++I EGC+K+CT+CVVPYTRG
Sbjct: 117 SVRGDRSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTYCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR    ++ E  +L   GV E+ LLGQNVNAWRG+  DG   +F+DLL  ++ I G+
Sbjct: 172 EEVSRPSDDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGSTGSFADLLRLVAAIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+TTSHP + +D +I+ + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II 
Sbjct: 232 DRIRFTTSHPIEFTDDIIEVYRDTPELVSFLHLPVQSGSDRILNLMGRTHTALEYKAIIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R+ RPDI ISSDFIVGFPGET +DF  TM L+  + +  ++SF +S R GTP ++M++
Sbjct: 292 KLRAARPDIQISSDFIVGFPGETTEDFEKTMKLIADVNFDMSYSFIFSARPGTPAADMVD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439
            V E  K +RL  LQ+++ +Q ++++   +G    +L+E   ++   +L GR+   + V 
Sbjct: 352 DVPEEEKKQRLYILQERINQQAMAWSRRMLGTTQRILVEGTSRKSIMELSGRTENNRVVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG  + V ITDV  ++L G++V
Sbjct: 412 FEGTPDMIGKFVDVEITDVYPNSLRGKVV 440


>gi|86136015|ref|ZP_01054594.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Roseobacter sp. MED193]
 gi|85826889|gb|EAQ47085.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Roseobacter sp. MED193]
          Length = 455

 Score =  493 bits (1269), Expect = e-137,   Method: Composition-based stats.
 Identities = 245/446 (54%), Positives = 323/446 (72%), Gaps = 9/446 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
            P++ F+K+YGCQMNVYDS RM +    QGY  V S D+AD+I+LNTCHIREKAAEKVYS
Sbjct: 18  APKKLFIKTYGCQMNVYDSERMAEALGGQGYSEVKSADEADMILLNTCHIREKAAEKVYS 77

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            LGR + LK        DL + VAGCVAQAEG+EI+RR P+V++VVGPQ+Y+RLPE+ E+
Sbjct: 78  ELGRFKKLKAE----KPDLKIGVAGCVAQAEGQEIMRRQPLVDLVVGPQSYHRLPEMEEK 133

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           AR G++V+DTD+  EDKFE+L          RG TAFLT+QEGCDKFC FCVVPYTRG E
Sbjct: 134 ARAGEKVLDTDFPEEDKFEKLKRRP---KATRGPTAFLTVQEGCDKFCAFCVVPYTRGAE 190

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR   +++ EAR L++ GV EITLLGQNVNA+ G G +G+  T + L++ L ++ GL R
Sbjct: 191 VSRPADRILTEARDLVERGVREITLLGQNVNAYHGAGANGD-LTLAQLIWELDKVDGLER 249

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP DM D LI+AHG    LMPYLHLPVQ+GSD+ILK MNR HTA  Y ++I+RI
Sbjct: 250 IRFTTSHPNDMMDDLIEAHGTCKKLMPYLHLPVQAGSDKILKRMNRSHTAESYLRLIERI 309

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+ RPDI IS DFIVGFP ET++DF+AT+DLV+++ Y  A+SFKYS R GTP +    QV
Sbjct: 310 RAARPDILISGDFIVGFPEETEEDFQATLDLVEEVKYGTAYSFKYSTRPGTPAAERP-QV 368

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
           +     +RL  LQ  L  QQ    D+ VG+ + VL EK G++ G+++G+S +L +V +  
Sbjct: 369 NPAEADDRLQRLQALLTRQQREIQDSMVGREVGVLFEKPGRQPGQMLGKSDYLHAVHVAD 428

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
            +   GD+ +VRI   + ++L GEL+
Sbjct: 429 CDRKAGDLARVRIVSSRTNSLAGELI 454


>gi|115522235|ref|YP_779146.1| RNA modification protein [Rhodopseudomonas palustris BisA53]
 gi|122298059|sp|Q07V68|MIAB_RHOP5 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|115516182|gb|ABJ04166.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Rhodopseudomonas
           palustris BisA53]
          Length = 465

 Score =  493 bits (1269), Expect = e-137,   Method: Composition-based stats.
 Identities = 241/445 (54%), Positives = 318/445 (71%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P++  +KS+GCQMNVYD+ RM D    +G+    S DDADL++LNTCHIREKAAEKVYS 
Sbjct: 4   PRKLHIKSFGCQMNVYDAQRMVDALAPEGFVETQSADDADLVILNTCHIREKAAEKVYSE 63

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LG++R LK      G    + VAGCVAQAEG EI+RR P V+VVVGPQ+Y+ LPELLE+A
Sbjct: 64  LGKLRLLKQDAASHGRRFEIAVAGCVAQAEGAEIIRRQPAVDVVVGPQSYHHLPELLEKA 123

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           R   R ++T++ +EDKF  L        R RGV+AF+T+QEGCDKFC+FCVVPYTRG E+
Sbjct: 124 RRDGRALETEFPIEDKFGVLPPPRPDAIRARGVSAFVTVQEGCDKFCSFCVVPYTRGAEM 183

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR +++++D+ ++LIDNGV EITL+GQNVNA+ G+G D    T   LL  L+ + G+ RL
Sbjct: 184 SRPVAKILDDVKRLIDNGVREITLIGQNVNAYHGEGPDDRPWTLGALLRHLASVPGVARL 243

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           RY+TSHP D+ D LI AH +L  LMP++HLPVQSGSD IL +MNRRH+A +YR++IDR R
Sbjct: 244 RYSTSHPLDVDDELIAAHRELPGLMPFVHLPVQSGSDAILAAMNRRHSADDYRRVIDRFR 303

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              P IA SSDFIVGFPGETD DF AT+ LV +IGYA A+SFKYSPR GTP + + E V 
Sbjct: 304 QADPSIAFSSDFIVGFPGETDRDFEATLALVTQIGYAGAYSFKYSPRPGTPAAELQEMVA 363

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
             V  +RL  LQ  +  QQ +FN A +G  ++VL E+  +  G++VGR+ +LQ   + + 
Sbjct: 364 PAVMDQRLEQLQGLIDSQQAAFNRASIGTTVDVLFERAARHPGQIVGRTAYLQPAHVMAA 423

Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468
           +  +G ++ V I  ++  +L GELV
Sbjct: 424 DDIVGQVLPVTIHSLERYSLIGELV 448


>gi|15602866|ref|NP_245938.1| hypothetical protein PM1001 [Pasteurella multocida subsp. multocida
           str. Pm70]
 gi|18203221|sp|Q9L699|MIAB_PASMU RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|7716541|gb|AAF68426.1|AF237940_1 conserved hypothetical protein [Pasteurella multocida]
 gi|12721330|gb|AAK03085.1| unknown [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 474

 Score =  492 bits (1268), Expect = e-137,   Method: Composition-based stats.
 Identities = 208/449 (46%), Positives = 292/449 (65%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + Q+  +K++GCQMN YDS +M D+  S  G E     ++AD+++LNTC IREKA EKV+
Sbjct: 1   MTQKLHIKTWGCQMNEYDSSKMADLLNSTHGLELTEIPEEADVLLLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR + LK    K    L++ V GCVA  EGE I  R+P V+++ GPQT +RLPE++ 
Sbjct: 61  HQLGRWKELK----KHKPGLVIGVGGCVASQEGEHIRTRAPYVDIIFGPQTLHRLPEMIN 116

Query: 142 RARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           + R GK  VVD  +   +KF+RL        R  G TAF++I EGC+K+C+FCVVPYTRG
Sbjct: 117 QIRGGKSSVVDVSFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCSFCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR +  V+ E  +L + GV E+ LLGQNVNA+RG   D   CTF++LL  ++ I G+
Sbjct: 172 EEVSRPVDDVLFEIAQLAEQGVREVNLLGQNVNAYRGATHDDGICTFAELLRLVAAIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            RLR+TTSHP + +D +I  + D   L+ +LHLPVQSGSDR+L  M R HTA EY+ II 
Sbjct: 232 DRLRFTTSHPIEFTDDIIDVYRDTPELVSFLHLPVQSGSDRVLSMMKRNHTALEYKSIIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R+VRP+I ISSDFIVGFPGET +DF  TM+L+ ++ +  +FSF YS R GTP ++M +
Sbjct: 292 KLRAVRPEIQISSDFIVGFPGETAEDFEQTMNLIAQVNFDMSFSFIYSARPGTPAADMPD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439
            V E  K +RL  LQ+++  Q   F+ A +G    VL+E   K+   +L GR+   + V 
Sbjct: 352 DVTEEEKKQRLYVLQQRINNQAAQFSRAMLGTEQRVLVEGPSKKDLMELTGRTETNRIVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG  + ++ITDV  ++L GE+V
Sbjct: 412 FVGTPDMIGKFVDIKITDVFTNSLRGEVV 440


>gi|229895960|ref|ZP_04511130.1| isopentenyl-adenosine A37 tRNA methylthiolase [Yersinia pestis
           Pestoides A]
 gi|229891217|sp|A9R6X8|MIAB_YERPG RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|229891219|sp|A4TNY6|MIAB_YERPP RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|229700883|gb|EEO88912.1| isopentenyl-adenosine A37 tRNA methylthiolase [Yersinia pestis
           Pestoides A]
          Length = 474

 Score =  492 bits (1268), Expect = e-137,   Method: Composition-based stats.
 Identities = 202/449 (44%), Positives = 286/449 (63%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++  +K++GCQMN YDS +M D+  S  GY+     ++ADL++LNTC IREKA EKV+
Sbjct: 1   MTKKLHIKTWGCQMNEYDSSKMADLLASTHGYQLTTIPEEADLLLLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S LG+ + LK         L++ V GCVA  EGE++ +R+P V+V+ GPQT +RLPE++ 
Sbjct: 61  SLLGQWKLLKEK----NPQLIIGVGGCVASQEGEQLRQRAPCVDVIFGPQTLHRLPEMIN 116

Query: 142 RAR-FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
             +     VVD  +   +KF+RL        R  G TAF++I EGC+K+CTFCVVPYTRG
Sbjct: 117 HVQGTNSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTFCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR    ++ E  +L   GV E+ LLGQNVNA+RG   DG+ C+F++LL  ++ I G+
Sbjct: 172 EEVSRPSDDILFEIAQLAAQGVREVNLLGQNVNAYRGATYDGDICSFAELLRLVAAIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+TTSHP + +D +I  + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II 
Sbjct: 232 DRVRFTTSHPIEFTDDIIDVYRDTPELVSFLHLPVQSGSDRILTMMKRAHTALEYKAIIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R  RPDI ISSDFIVGFPGET  DF  TM LV  I +  ++SF YSPR GTP +++ +
Sbjct: 292 KLRQARPDIQISSDFIVGFPGETQQDFEQTMKLVADIHFDTSYSFIYSPRPGTPAADLPD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439
            V E  K +RL  LQ+++ +Q +  +   VG +  VL+E   ++   +L GR+   + V 
Sbjct: 352 NVSEEEKKQRLHILQQRISQQAMEISRKMVGTVQRVLVEGTSRKNVMELAGRTENNRVVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG  + V I +V  S+L G L+
Sbjct: 412 FEGSPDMIGKFVDVEIVNVYASSLRGILL 440


>gi|317491143|ref|ZP_07949579.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Enterobacteriaceae
           bacterium 9_2_54FAA]
 gi|316920690|gb|EFV42013.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Enterobacteriaceae
           bacterium 9_2_54FAA]
          Length = 474

 Score =  492 bits (1268), Expect = e-137,   Method: Composition-based stats.
 Identities = 196/449 (43%), Positives = 292/449 (65%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + Q+  +K++GCQMN YDS +M D+  S  G+E  ++ ++AD+++LNTC IREKA EKV+
Sbjct: 1   MTQKLHIKTWGCQMNEYDSSKMADLLGSTHGFELTDNAEEADVLLLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR + LK +      ++++ V GCVA  EG+ + +R+  V++V GPQT +RLPE++ 
Sbjct: 61  HQLGRWKLLKEA----NPNVIIGVGGCVASQEGKLLRQRAHYVDIVFGPQTLHRLPEMIN 116

Query: 142 RARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           + R  K  VVD  +   +KF+RL        R  G +AF++I EGC+K+CT+CVVPYTRG
Sbjct: 117 KVRGSKSPVVDVSFPEIEKFDRLP-----EPRAEGPSAFVSIMEGCNKYCTYCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR    V+ E  +L   GV E+ LLGQNVNA+RG   DG+ CTF++LL  ++ I G+
Sbjct: 172 EEVSRPADDVLFEIAQLAAQGVREVNLLGQNVNAYRGPSFDGDICTFAELLRLVAAIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+TTSHP + +D +I  + D   L+ +LHLPVQSGSDRIL  M R HT  EY+ II 
Sbjct: 232 DRIRFTTSHPIEFTDDIIAVYEDTPELVSFLHLPVQSGSDRILNLMKRTHTVLEYKSIIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R  RPDI ISSDFI+GFPGET +DF  TM L+ ++ +  ++SF +SPR GTP ++M +
Sbjct: 292 KLRKARPDILISSDFIIGFPGETQEDFEQTMKLIAEVNFDVSYSFVFSPRPGTPAADMAD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439
            V E  K +RL  LQ ++ +Q  S++   VG +  +L+E   ++   ++ GR+   + V 
Sbjct: 352 DVPEEEKKQRLYILQDRINQQAQSYSRKMVGTVQRILVEGISRKNVMEMSGRTENNRVVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  +G  + V IT+V+ ++L G LV
Sbjct: 412 FEGSPELVGTFVDVEITEVRTNSLRGVLV 440


>gi|157146729|ref|YP_001454048.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Citrobacter
           koseri ATCC BAA-895]
 gi|157083934|gb|ABV13612.1| hypothetical protein CKO_02502 [Citrobacter koseri ATCC BAA-895]
          Length = 488

 Score =  492 bits (1268), Expect = e-137,   Method: Composition-based stats.
 Identities = 194/449 (43%), Positives = 290/449 (64%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++  +K++GCQMN YDS +M D+  +  GY+     ++AD+++LNTC IREKA EKV+
Sbjct: 15  MTKKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTEVAEEADVLLLNTCSIREKAQEKVF 74

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR + LK        DL++ V GCVA  EG+ I +R+  V+++ GPQT +RLPE++ 
Sbjct: 75  HQLGRWKLLKEK----NPDLIIGVGGCVASQEGDHIRQRAHYVDIIFGPQTLHRLPEMIN 130

Query: 142 RARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
             R  +  VVD  +   +KF+RL        R  G TAF++I EGC+K+CT+CVVPYTRG
Sbjct: 131 SVRGDRSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTYCVVPYTRG 185

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR    ++ E  +L   GV E+ LLGQNVNAWRG+  DG   +F+DLL  ++ I G+
Sbjct: 186 EEVSRPSDDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTTGSFADLLRLVAAIDGI 245

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+TTSHP + +D +I+ + D   L+ +LHLPVQSG+DR+L  M R HTA EY+ II 
Sbjct: 246 DRIRFTTSHPIEFTDDIIEVYRDTPELVSFLHLPVQSGADRVLNLMGRTHTALEYKAIIR 305

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R+ RPDI ISSDFIVGFPGET  DF  TM L+  + +  ++SF +S R GTP ++M++
Sbjct: 306 KLRAARPDIQISSDFIVGFPGETTQDFEQTMKLIADVNFDMSYSFIFSARPGTPAADMVD 365

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439
            V E  K +RL  LQ+++ +Q ++++   +G +  +L+E   ++   +L GR+   + V 
Sbjct: 366 DVPEEEKKQRLYILQERINQQAMAWSRRMLGTVQRILVEGTSRKSIMELSGRTENNRVVN 425

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG  + V ITDV  ++L G++V
Sbjct: 426 FEGTPEMIGKFVDVEITDVYTNSLRGKVV 454


>gi|183598131|ref|ZP_02959624.1| hypothetical protein PROSTU_01496 [Providencia stuartii ATCC 25827]
 gi|188020290|gb|EDU58330.1| hypothetical protein PROSTU_01496 [Providencia stuartii ATCC 25827]
          Length = 476

 Score =  492 bits (1267), Expect = e-137,   Method: Composition-based stats.
 Identities = 200/447 (44%), Positives = 296/447 (66%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ ++K++GCQMN YDS +M  +  S  GY+     ++ADL++LNTC IREKA EKV+  
Sbjct: 5   KKLYIKTWGCQMNEYDSSKMASLLESTHGYQITEIPEEADLLLLNTCSIREKAQEKVFHQ 64

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR ++ K+S      D+++ V GCVA  EG+ I +R+P V++V GPQT +RLPE++ + 
Sbjct: 65  LGRWKSFKDS----NPDIIIGVGGCVASQEGDFIRQRAPSVDIVFGPQTLHRLPEMINQV 120

Query: 144 RFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           +  +  V+D  +   +KF+RL        R  G TAF++I EGC+K+CTFCVVPYTRG E
Sbjct: 121 KGSRSPVIDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTFCVVPYTRGEE 175

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR    ++ E  +L   GV E+ LLGQNVNA+RG   DGE CTF++L+  ++ I G+ R
Sbjct: 176 VSRPCDDILFEIAQLAAQGVREVNLLGQNVNAYRGATFDGEICTFAELIRLVAAIDGIDR 235

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP + +D +I+ + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II ++
Sbjct: 236 IRFTTSHPIEFTDDIIEVYEDTPELVSFLHLPVQSGSDRILTLMKRAHTALEYKAIIRKL 295

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R  RPDI ISSDFIVGFPGET+DDF  TM L+  + +  +FSF YSPR GTP +++ + V
Sbjct: 296 RKARPDILISSDFIVGFPGETNDDFEKTMKLIADVNFDMSFSFIYSPRPGTPAADLPDDV 355

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441
            E+ K +RL  LQ+++ +Q +S++ A +G +  +L+E   ++   +L GR+   + V   
Sbjct: 356 SEDEKKQRLYLLQQRINQQAMSYSRAMLGTVQRILVEGPSRKNVMELSGRTESNRVVNFE 415

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                IG  + V I DV  ++L G+++
Sbjct: 416 GSPDMIGKFVDVEIVDVYANSLRGKVI 442


>gi|108808470|ref|YP_652386.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Yersinia
           pestis Antiqua]
 gi|108811270|ref|YP_647037.1| tRNA-thiotransferase [Yersinia pestis Nepal516]
 gi|165925283|ref|ZP_02221115.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165937683|ref|ZP_02226245.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166008584|ref|ZP_02229482.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166212269|ref|ZP_02238304.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|167422525|ref|ZP_02314278.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167423482|ref|ZP_02315235.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|294504424|ref|YP_003568486.1| tRNA-thiotransferase [Yersinia pestis Z176003]
 gi|108774918|gb|ABG17437.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Yersinia pestis Nepal516]
 gi|108780383|gb|ABG14441.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Yersinia pestis Antiqua]
 gi|165914433|gb|EDR33048.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165922890|gb|EDR40041.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165992966|gb|EDR45267.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166206200|gb|EDR50680.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|166958539|gb|EDR55560.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167057652|gb|EDR67398.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|262362586|gb|ACY59307.1| tRNA-thiotransferase [Yersinia pestis D106004]
 gi|262366410|gb|ACY62967.1| tRNA-thiotransferase [Yersinia pestis D182038]
 gi|294354883|gb|ADE65224.1| tRNA-thiotransferase [Yersinia pestis Z176003]
          Length = 479

 Score =  492 bits (1267), Expect = e-137,   Method: Composition-based stats.
 Identities = 202/450 (44%), Positives = 285/450 (63%), Gaps = 12/450 (2%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKV 80
            + ++  +K++GCQMN YDS +M D+  S  GY+     ++ADL++LNTC IREKA EKV
Sbjct: 5   PMTKKLHIKTWGCQMNEYDSSKMADLLASTHGYQLTTIPEEADLLLLNTCSIREKAQEKV 64

Query: 81  YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140
           +S LG+ + LK         L++ V GCVA  EGE++ +R+P V+V+ GPQT +RLPE++
Sbjct: 65  FSLLGQWKLLKEK----NPQLIIGVGGCVASQEGEQLRQRAPCVDVIFGPQTLHRLPEMI 120

Query: 141 ERAR-FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
              +     VVD  +   +KF+RL        R  G TAF++I EGC+K+CTFCVVPYTR
Sbjct: 121 NHVQGTNSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTFCVVPYTR 175

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G E+SR    ++ E  +L   GV E+ LLGQNVNA+RG   DG+ C+F++LL  ++ I G
Sbjct: 176 GEEVSRPSDDILFEIAQLAAQGVREVNLLGQNVNAYRGATYDGDICSFAELLRLVAAIDG 235

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           + R+R+TTSHP + +D +I  + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II
Sbjct: 236 IDRVRFTTSHPIEFTDDIIDVYRDTPELVSFLHLPVQSGSDRILTMMKRAHTALEYKAII 295

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            ++R  RPDI ISSDFIVGFPGET  DF  TM LV  I +  ++SF YSPR GTP +++ 
Sbjct: 296 RKLRQARPDIQISSDFIVGFPGETQQDFEQTMKLVADIHFDTSYSFIYSPRPGTPAADLP 355

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSV 438
             V E  K +RL  LQ+++ +Q +  +   VG +  VL+E   ++   +L GR+   + V
Sbjct: 356 NNVSEEEKKQRLHILQQRISQQAMEISRKMVGTVQRVLVEGTSRKNVMELAGRTENNRVV 415

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468
                   IG  + V I +V  S+L G L+
Sbjct: 416 NFEGSPDMIGKFVDVEIVNVYASSLRGILL 445


>gi|167399273|ref|ZP_02304797.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|270489694|ref|ZP_06206768.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Yersinia pestis KIM D27]
 gi|167051777|gb|EDR63185.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|270338198|gb|EFA48975.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Yersinia pestis KIM D27]
          Length = 482

 Score =  492 bits (1267), Expect = e-137,   Method: Composition-based stats.
 Identities = 202/455 (44%), Positives = 287/455 (63%), Gaps = 12/455 (2%)

Query: 17  IVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREK 75
           ++    + ++  +K++GCQMN YDS +M D+  S  GY+     ++ADL++LNTC IREK
Sbjct: 3   LMMNNPMTKKLHIKTWGCQMNEYDSSKMADLLASTHGYQLTTIPEEADLLLLNTCSIREK 62

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135
           A EKV+S LG+ + LK         L++ V GCVA  EGE++ +R+P V+V+ GPQT +R
Sbjct: 63  AQEKVFSLLGQWKLLKEK----NPQLIIGVGGCVASQEGEQLRQRAPCVDVIFGPQTLHR 118

Query: 136 LPELLERAR-FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCV 194
           LPE++   +     VVD  +   +KF+RL        R  G TAF++I EGC+K+CTFCV
Sbjct: 119 LPEMINHVQGTNSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTFCV 173

Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL 254
           VPYTRG E+SR    ++ E  +L   GV E+ LLGQNVNA+RG   DG+ C+F++LL  +
Sbjct: 174 VPYTRGEEVSRPSDDILFEIAQLAAQGVREVNLLGQNVNAYRGATYDGDICSFAELLRLV 233

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
           + I G+ R+R+TTSHP + +D +I  + D   L+ +LHLPVQSGSDRIL  M R HTA E
Sbjct: 234 AAIDGIDRVRFTTSHPIEFTDDIIDVYRDTPELVSFLHLPVQSGSDRILTMMKRAHTALE 293

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
           Y+ II ++R  RPDI ISSDFIVGFPGET  DF  TM LV  I +  ++SF YSPR GTP
Sbjct: 294 YKAIIRKLRQARPDIQISSDFIVGFPGETQQDFEQTMKLVADIHFDTSYSFIYSPRPGTP 353

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSP 433
            +++   V E  K +RL  LQ+++ +Q +  +   VG +  VL+E   ++   +L GR+ 
Sbjct: 354 AADLPNNVSEEEKKQRLHILQQRISQQAMEISRKMVGTVQRVLVEGTSRKNVMELAGRTE 413

Query: 434 WLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
             + V        IG  + V I +V  S+L G L+
Sbjct: 414 NNRVVNFEGSPDMIGKFVDVEIVNVYASSLRGILL 448


>gi|262041254|ref|ZP_06014465.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Klebsiella pneumoniae
           subsp. rhinoscleromatis ATCC 13884]
 gi|330005959|ref|ZP_08305443.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Klebsiella sp. MS 92-3]
 gi|259041370|gb|EEW42430.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Klebsiella pneumoniae
           subsp. rhinoscleromatis ATCC 13884]
 gi|328536031|gb|EGF62437.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Klebsiella sp. MS 92-3]
          Length = 478

 Score =  492 bits (1266), Expect = e-137,   Method: Composition-based stats.
 Identities = 193/449 (42%), Positives = 288/449 (64%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++  +K++GCQMN YDS +M D+  +  GY+     ++AD+++LNTC IREKA EKV+
Sbjct: 5   MTKKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTEVAEEADVLLLNTCSIREKAQEKVF 64

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR + LK        DL++ V GCVA  EG+ I +R+  V+++ GPQT +RLPE++ 
Sbjct: 65  HQLGRWKLLKEK----NPDLIIGVGGCVASQEGDHIRQRAHYVDIIFGPQTLHRLPEMIN 120

Query: 142 RARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
             R  +  VVD  +   +KF+RL        R  G TAF++I EGC+K+CT+CVVPYTRG
Sbjct: 121 SVRGNRSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTYCVVPYTRG 175

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR    ++ E  +L   GV E+ LLGQNVNAWRG+  DG   +F+DLL  ++ I G+
Sbjct: 176 EEVSRPCDDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTTGSFADLLRLVAAIDGI 235

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+TTSHP + +D +I  + D   L+ +LHLPVQSGSDR+L  M R HTA EY+ II 
Sbjct: 236 DRIRFTTSHPIEFTDDIIDVYRDTPELVSFLHLPVQSGSDRVLNLMGRTHTALEYKAIIR 295

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R  RPDI ISSDFIVGFPGET +DF  TM L+  + +  ++SF +S R GTP ++M++
Sbjct: 296 KLREARPDIQISSDFIVGFPGETTEDFEKTMKLIADVNFDMSYSFIFSARPGTPAADMVD 355

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439
            V E  K +RL  LQ+++ +Q ++++   +G +  +L+E   ++   +L GR+   + V 
Sbjct: 356 DVPEADKKQRLYILQERINQQAMAWSRRMLGTVQRILVEGTSRKNIMELSGRTENNRVVN 415

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  +G  + V I DV  ++L G++V
Sbjct: 416 FEGTPDLVGKFVDVEIVDVYTNSLRGKIV 444


>gi|149365479|ref|ZP_01887514.1| putative tRNA-thiotransferase [Yersinia pestis CA88-4125]
 gi|218929701|ref|YP_002347576.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Yersinia
           pestis CO92]
 gi|229838168|ref|ZP_04458327.1| isopentenyl-adenosine A37 tRNA methylthiolase [Yersinia pestis
           biovar Orientalis str. PEXU2]
 gi|229898721|ref|ZP_04513866.1| isopentenyl-adenosine A37 tRNA methylthiolase [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|229901508|ref|ZP_04516630.1| isopentenyl-adenosine A37 tRNA methylthiolase [Yersinia pestis
           Nepal516]
 gi|122959987|sp|Q0WDR2|MIAB_YERPE RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|229891218|sp|Q1CKP3|MIAB_YERPN RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|229891220|sp|Q1C531|MIAB_YERPA RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|115348312|emb|CAL21243.1| putative tRNA-thiotransferase [Yersinia pestis CO92]
 gi|149291892|gb|EDM41966.1| putative tRNA-thiotransferase [Yersinia pestis CA88-4125]
 gi|229681437|gb|EEO77531.1| isopentenyl-adenosine A37 tRNA methylthiolase [Yersinia pestis
           Nepal516]
 gi|229688269|gb|EEO80340.1| isopentenyl-adenosine A37 tRNA methylthiolase [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|229694534|gb|EEO84581.1| isopentenyl-adenosine A37 tRNA methylthiolase [Yersinia pestis
           biovar Orientalis str. PEXU2]
          Length = 474

 Score =  492 bits (1266), Expect = e-137,   Method: Composition-based stats.
 Identities = 202/449 (44%), Positives = 285/449 (63%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++  +K++GCQMN YDS +M D+  S  GY+     ++ADL++LNTC IREKA EKV+
Sbjct: 1   MTKKLHIKTWGCQMNEYDSSKMADLLASTHGYQLTTIPEEADLLLLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S LG+ + LK         L++ V GCVA  EGE++ +R+P V+V+ GPQT +RLPE++ 
Sbjct: 61  SLLGQWKLLKEK----NPQLIIGVGGCVASQEGEQLRQRAPCVDVIFGPQTLHRLPEMIN 116

Query: 142 RAR-FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
             +     VVD  +   +KF+RL        R  G TAF++I EGC+K+CTFCVVPYTRG
Sbjct: 117 HVQGTNSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTFCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR    ++ E  +L   GV E+ LLGQNVNA+RG   DG+ C+F++LL  ++ I G+
Sbjct: 172 EEVSRPSDDILFEIAQLAAQGVREVNLLGQNVNAYRGATYDGDICSFAELLRLVAAIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+TTSHP + +D +I  + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II 
Sbjct: 232 DRVRFTTSHPIEFTDDIIDVYRDTPELVSFLHLPVQSGSDRILTMMKRAHTALEYKAIIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R  RPDI ISSDFIVGFPGET  DF  TM LV  I +  ++SF YSPR GTP +++  
Sbjct: 292 KLRQARPDIQISSDFIVGFPGETQQDFEQTMKLVADIHFDTSYSFIYSPRPGTPAADLPN 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439
            V E  K +RL  LQ+++ +Q +  +   VG +  VL+E   ++   +L GR+   + V 
Sbjct: 352 NVSEEEKKQRLHILQQRISQQAMEISRKMVGTVQRVLVEGTSRKNVMELAGRTENNRVVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG  + V I +V  S+L G L+
Sbjct: 412 FEGSPDMIGKFVDVEIVNVYASSLRGILL 440


>gi|307248353|ref|ZP_07530376.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Actinobacillus pleuropneumoniae serovar 2 str. S1536]
 gi|307250579|ref|ZP_07532521.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Actinobacillus pleuropneumoniae serovar 4 str. M62]
 gi|307252960|ref|ZP_07534848.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
 gi|307261809|ref|ZP_07543475.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Actinobacillus pleuropneumoniae serovar 12 str. 1096]
 gi|229890699|sp|B0BQR0|MIAB_ACTPJ RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|306855091|gb|EFM87271.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Actinobacillus pleuropneumoniae serovar 2 str. S1536]
 gi|306857395|gb|EFM89509.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Actinobacillus pleuropneumoniae serovar 4 str. M62]
 gi|306859598|gb|EFM91623.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
 gi|306868627|gb|EFN00438.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Actinobacillus pleuropneumoniae serovar 12 str. 1096]
          Length = 475

 Score =  492 bits (1266), Expect = e-137,   Method: Composition-based stats.
 Identities = 204/446 (45%), Positives = 295/446 (66%), Gaps = 12/446 (2%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +  + ++GCQMN YDS +M D+  S  G E  +  ++AD+++LNTC IREKA EKV+S L
Sbjct: 3   KLHITTWGCQMNEYDSSKMADLLNSTHGLELTDKPEEADVLLLNTCSIREKAQEKVFSQL 62

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR +N K    K+  DL++ V GCVA  EGE I  R+P V++V GPQT +RLPE++ + R
Sbjct: 63  GRWKNWK----KDKPDLIIGVGGCVASQEGEHIRDRAPFVDIVFGPQTLHRLPEMINKIR 118

Query: 145 FGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            G R +VD  +   +KF+RL        R  G TAF++I EGC+K+C+FCVVPYTRG E+
Sbjct: 119 GGDRAIVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCSFCVVPYTRGEEV 173

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR +  V+ E  +L + GV E+ LLGQNVNA+RG+  DG  CTF++LL  ++ I G+ R+
Sbjct: 174 SRPVDDVLFEIAQLAEQGVREVNLLGQNVNAYRGETFDGGICTFAELLRLVAAIDGIDRV 233

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           RYTTSHP + +D +I+ + D   L+ +LHLP+QSG+DR+L  M R HTA EY+ II ++R
Sbjct: 234 RYTTSHPIEFTDDIIEVYRDTPELVSFLHLPIQSGADRVLTMMKRNHTALEYKAIIRKLR 293

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
            VRP+I ISSDFIVGFPGET +DF  TM +++++ +  +FSF YS R GTP +++ + + 
Sbjct: 294 EVRPNIQISSDFIVGFPGETAEDFEQTMKVIEQVNFDMSFSFIYSARPGTPAADLPDDIS 353

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNS 442
           E  K  RL  LQ+++  Q + F+ A +G    VL+E   K+   +L GR+   + V    
Sbjct: 354 EEEKKARLARLQQRINHQAMQFSRAMLGTEQRVLVEGPSKKDIMELTGRTENNRIVNFQG 413

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
               IG  + ++ITDV  ++L GE+V
Sbjct: 414 TPDMIGKFVDIKITDVYTNSLRGEVV 439


>gi|264680203|ref|YP_003280113.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Comamonas testosteroni
           CNB-2]
 gi|299533989|ref|ZP_07047341.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Comamonas
           testosteroni S44]
 gi|262210719|gb|ACY34817.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Comamonas testosteroni
           CNB-2]
 gi|298717898|gb|EFI58903.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Comamonas
           testosteroni S44]
          Length = 442

 Score =  492 bits (1266), Expect = e-137,   Method: Composition-based stats.
 Identities = 207/451 (45%), Positives = 293/451 (64%), Gaps = 15/451 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++ F+K++GCQMN YDS +M D+   +QGYE   ++D+ADLI+ NTC +REKA EKV+
Sbjct: 1   MSKKVFIKTFGCQMNEYDSDKMADVLGAAQGYEPTQNVDEADLILFNTCSVREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL- 140
           S LGRIR+LK         +L+ V GCVA  EG EI++R+P V+VV GPQT +RLPELL 
Sbjct: 61  SDLGRIRHLKEK------GVLIGVGGCVASQEGAEIIKRAPFVDVVFGPQTLHRLPELLN 114

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           +RA   K  VD  +   +KF+ L        R  G +AF++I EGC K+C++CVVPYTRG
Sbjct: 115 QRAAKAKPQVDISFPEIEKFDHLPPA-----RVEGASAFVSIMEGCSKYCSYCVVPYTRG 169

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG-EKCTFSDLLYSLSEIKG 259
            E+SR    V+ E   L + GV EITLLGQNVNA+ GK  D  E   F+ LL  ++EI G
Sbjct: 170 EEVSRPFEDVLVEVAGLAEQGVKEITLLGQNVNAYLGKMGDSSEMADFALLLEYVAEIPG 229

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           + R+RYTTSHP + +  LI+A+  +  L+ +LHLPVQ GSD+IL +M R +TA EY+  I
Sbjct: 230 IERIRYTTSHPNEFTPRLIEAYAKIPQLVSHLHLPVQHGSDKILMAMKRGYTAMEYKSTI 289

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            ++R++RPD+A+SSDFIVGFPGET++DF+  M L+  + +  +FSF +SPR GTP +N+ 
Sbjct: 290 RKLRAIRPDLAMSSDFIVGFPGETEEDFQKMMKLIHDVRFDNSFSFIFSPRPGTPAANLH 349

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLVGRSPWLQSV 438
           +     VK  RL  LQ  +       ++  VG +  +L+E   K  G +L+GR+   + V
Sbjct: 350 DDTPHEVKLRRLQELQAVINTNIKEISEERVGTVQRLLVEGVSKRDGSELMGRTYCNRVV 409

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
                   IG ++ V+IT+ K  TL GE++V
Sbjct: 410 NFPGNERLIGQMVDVKITEAKAYTLRGEVLV 440


>gi|109898523|ref|YP_661778.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Pseudoalteromonas
           atlantica T6c]
 gi|122971932|sp|Q15TR4|MIAB_PSEA6 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|109700804|gb|ABG40724.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Pseudoalteromonas
           atlantica T6c]
          Length = 477

 Score =  492 bits (1266), Expect = e-137,   Method: Composition-based stats.
 Identities = 202/449 (44%), Positives = 296/449 (65%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++ F+K++GCQMN YDS +M D+  S  GY+  ++ ++AD+I+LNTC IREKA EKV+
Sbjct: 1   MTKKLFIKTWGCQMNEYDSQKMADLLDSTHGYQVADTAEEADIILLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR +NLK     +  +L++ V GCVA  EG+ I +R+P V++V GPQT +RLPE++ 
Sbjct: 61  HQLGRWKNLKQ----DKPELIIGVGGCVASQEGQVIRQRAPFVDLVFGPQTLHRLPEMIN 116

Query: 142 RARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           + + G   V+D  +   +KF+RL        +  G TAF++I EGC K+CTFCVVPYTRG
Sbjct: 117 QIKGGSSSVIDISFPEIEKFDRLP-----EPKAEGPTAFVSIMEGCSKYCTFCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR +  V+ E  +L + GV E+ LLGQNVNA+RG   DG  CTF++LL  ++ I G+
Sbjct: 172 EEVSRPVDDVLLEVAQLAEQGVREVNLLGQNVNAFRGPHHDGAICTFAELLEMVASIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+RYTTSHP + +D +I A+  +  L+ +LHLPVQSGSDR+L  M R HTA EY+  I 
Sbjct: 232 DRIRYTTSHPVEFTDDIIDAYATIPELVDHLHLPVQSGSDRVLNLMKRGHTAIEYKSKIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R +RP++++SSDFI+GFPGETDDDF ATMDL+  + +  +FSF YS R GTP +++ +
Sbjct: 292 KLRKIRPNLSMSSDFIIGFPGETDDDFEATMDLIQAMDFDLSFSFIYSARPGTPAADLPD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439
            V E  K ERL  LQ ++ +Q +      +     VL+E   K+   +L GR+   + V 
Sbjct: 352 DVSETTKKERLQLLQNRITQQALRIARNMIDSEQRVLVEGPSKKNPMELSGRTENNRVVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG  + V+ITDV  ++L G+++
Sbjct: 412 FEGTPDMIGGFVDVKITDVFANSLRGDVL 440


>gi|92115654|ref|YP_575383.1| tRNA-i(6)A37 modification enzyme MiaB [Nitrobacter hamburgensis
           X14]
 gi|123083888|sp|Q1QS74|MIAB_NITHX RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|91798548|gb|ABE60923.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Nitrobacter hamburgensis
           X14]
          Length = 473

 Score =  491 bits (1265), Expect = e-137,   Method: Composition-based stats.
 Identities = 246/442 (55%), Positives = 330/442 (74%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P++  +KSYGCQMNVYD+ RM D   ++G+    S ++ADL++LNTCHIREKA+EKVYS 
Sbjct: 4   PRKLHIKSYGCQMNVYDAQRMVDTLAAEGFVETASAEEADLVILNTCHIREKASEKVYSE 63

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR+R  K+   ++G ++ VVVAGCVAQAEG+EI+RR+P+V+VVVGPQ+Y+ LP+LL RA
Sbjct: 64  LGRLRAAKDQAARDGREMSVVVAGCVAQAEGDEIIRRAPVVDVVVGPQSYHHLPQLLARA 123

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           +   R ++T++ VEDKF  L        R RG++AF+T+QEGCDKFCTFCVVPYTRG E+
Sbjct: 124 KADGRALETEFPVEDKFGFLPQPSRQAIRARGISAFVTVQEGCDKFCTFCVVPYTRGAEV 183

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR ++++V++ ++L DNGV EITL+GQNVNA+ G G DG    F  LL+ L++I G+VRL
Sbjct: 184 SRPVAKIVEDVQRLADNGVREITLIGQNVNAYHGDGPDGRPWPFGKLLHRLADIPGIVRL 243

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           RY+TSHPRD+ D LI+AH DL  LMP++HLPVQSGSDRIL++MNRRHTA +YR+++DR R
Sbjct: 244 RYSTSHPRDVEDSLIEAHRDLGALMPFVHLPVQSGSDRILEAMNRRHTADDYRRVVDRFR 303

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
            VR DIA SSDFIVGFPGET+ DF AT+ LV +IGYA A+SFKYSPR GTP + M E V 
Sbjct: 304 HVRQDIAFSSDFIVGFPGETEQDFTATLALVTQIGYAGAYSFKYSPRPGTPAAEMKETVS 363

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
                ERL+ LQ  +  QQ +FN A VG  ++VL E+  +  G++VGR+ +LQ   + + 
Sbjct: 364 TADMDERLVRLQNLIDSQQSAFNRAAVGTTVDVLFERAARNPGQIVGRTAYLQPAHVVAS 423

Query: 444 NHNIGDIIKVRITDVKISTLYG 465
              IG I+ V +  ++  +L G
Sbjct: 424 ADIIGQILPVTVASLERYSLLG 445


>gi|229890690|sp|A8AJE9|MIAB_CITK8 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
          Length = 474

 Score =  491 bits (1265), Expect = e-137,   Method: Composition-based stats.
 Identities = 194/449 (43%), Positives = 290/449 (64%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++  +K++GCQMN YDS +M D+  +  GY+     ++AD+++LNTC IREKA EKV+
Sbjct: 1   MTKKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTEVAEEADVLLLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR + LK        DL++ V GCVA  EG+ I +R+  V+++ GPQT +RLPE++ 
Sbjct: 61  HQLGRWKLLKEK----NPDLIIGVGGCVASQEGDHIRQRAHYVDIIFGPQTLHRLPEMIN 116

Query: 142 RARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
             R  +  VVD  +   +KF+RL        R  G TAF++I EGC+K+CT+CVVPYTRG
Sbjct: 117 SVRGDRSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTYCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR    ++ E  +L   GV E+ LLGQNVNAWRG+  DG   +F+DLL  ++ I G+
Sbjct: 172 EEVSRPSDDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTTGSFADLLRLVAAIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+TTSHP + +D +I+ + D   L+ +LHLPVQSG+DR+L  M R HTA EY+ II 
Sbjct: 232 DRIRFTTSHPIEFTDDIIEVYRDTPELVSFLHLPVQSGADRVLNLMGRTHTALEYKAIIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R+ RPDI ISSDFIVGFPGET  DF  TM L+  + +  ++SF +S R GTP ++M++
Sbjct: 292 KLRAARPDIQISSDFIVGFPGETTQDFEQTMKLIADVNFDMSYSFIFSARPGTPAADMVD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439
            V E  K +RL  LQ+++ +Q ++++   +G +  +L+E   ++   +L GR+   + V 
Sbjct: 352 DVPEEEKKQRLYILQERINQQAMAWSRRMLGTVQRILVEGTSRKSIMELSGRTENNRVVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG  + V ITDV  ++L G++V
Sbjct: 412 FEGTPEMIGKFVDVEITDVYTNSLRGKVV 440


>gi|254474407|ref|ZP_05087793.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Ruegeria sp. R11]
 gi|214028650|gb|EEB69485.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Ruegeria sp. R11]
          Length = 440

 Score =  491 bits (1265), Expect = e-137,   Method: Composition-based stats.
 Identities = 250/446 (56%), Positives = 324/446 (72%), Gaps = 9/446 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
            P++ F+K+YGCQMNVYDS RM +    +GY    S DDAD+I+LNTCHIREKAAEKVYS
Sbjct: 3   APKKLFIKTYGCQMNVYDSERMAEALGGEGYVETKSPDDADMILLNTCHIREKAAEKVYS 62

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            LGR + LK     +  DL + VAGCVAQAEGEEI+RR P+V++VVGPQ+Y+RLPE+  +
Sbjct: 63  ELGRFKGLKA----DKPDLKIGVAGCVAQAEGEEIMRRQPLVDLVVGPQSYHRLPEMEAK 118

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           AR G++V+DTD+  EDKFE+L         KRG TAFLT+QEGCDKFC FCVVPYTRG E
Sbjct: 119 ARTGEKVLDTDFPEEDKFEKLK---NRPKAKRGPTAFLTVQEGCDKFCAFCVVPYTRGAE 175

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR   +++ EAR L++ GV EITLLGQNVNA+ G G +G+  T + L++ L ++ GL R
Sbjct: 176 VSRPADRILREARDLVERGVREITLLGQNVNAYHGAGPNGD-MTLAQLIWELDKVDGLER 234

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP DM D LI+AHG    LMPYLHLPVQ+GSD+ILK MNR HTA  Y ++I+RI
Sbjct: 235 IRFTTSHPNDMQDDLIEAHGTCAKLMPYLHLPVQAGSDKILKRMNRAHTAESYIRLIERI 294

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+ RPDI IS DFIVGFP ET++DF+ATMDLV+++ Y  A+SFKYS R GTP +    QV
Sbjct: 295 RAARPDILISGDFIVGFPEETEEDFQATMDLVEEVKYGTAYSFKYSTRPGTPAAERA-QV 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
           D     +RL  LQ  L +QQ    D+ VG+ + VL EK G+  G++VG+S +L +V +  
Sbjct: 354 DPAAADDRLQRLQALLTQQQREVQDSMVGREVGVLFEKAGRLPGQMVGKSDYLHAVHVAD 413

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
            + NIGD+ +VRI     ++L GEL+
Sbjct: 414 CDRNIGDLARVRIVSSGPNSLAGELI 439


>gi|229890677|sp|A6T6B5|MIAB_KLEP7 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
          Length = 474

 Score =  491 bits (1265), Expect = e-137,   Method: Composition-based stats.
 Identities = 193/449 (42%), Positives = 288/449 (64%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++  +K++GCQMN YDS +M D+  +  GY+     ++AD+++LNTC IREKA EKV+
Sbjct: 1   MTKKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTEVAEEADVLLLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR + LK        DL++ V GCVA  EG+ I +R+  V+++ GPQT +RLPE++ 
Sbjct: 61  HQLGRWKLLKEK----NPDLIIGVGGCVASQEGDHIRQRAHYVDIIFGPQTLHRLPEMIN 116

Query: 142 RARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
             R  +  VVD  +   +KF+RL        R  G TAF++I EGC+K+CT+CVVPYTRG
Sbjct: 117 SVRGNRSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTYCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR    ++ E  +L   GV E+ LLGQNVNAWRG+  DG   +F+DLL  ++ I G+
Sbjct: 172 EEVSRPCDDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTTGSFADLLRLVAAIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+TTSHP + +D +I  + D   L+ +LHLPVQSGSDR+L  M R HTA EY+ II 
Sbjct: 232 DRIRFTTSHPIEFTDDIIDVYRDTPELVSFLHLPVQSGSDRVLNLMGRTHTALEYKAIIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R  RPDI ISSDFIVGFPGET +DF  TM L+  + +  ++SF +S R GTP ++M++
Sbjct: 292 KLREARPDIQISSDFIVGFPGETTEDFEKTMKLIADVNFDMSYSFIFSARPGTPAADMVD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439
            V E  K +RL  LQ+++ +Q ++++   +G +  +L+E   ++   +L GR+   + V 
Sbjct: 352 DVPEADKKQRLYILQERINQQAMAWSRRMLGTVQRILVEGTSRKNIMELSGRTENNRVVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  +G  + V I DV  ++L G++V
Sbjct: 412 FEGTPDLVGKFVDVEIVDVYTNSLRGKIV 440


>gi|290510411|ref|ZP_06549781.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Klebsiella sp. 1_1_55]
 gi|289777127|gb|EFD85125.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Klebsiella sp. 1_1_55]
          Length = 478

 Score =  491 bits (1264), Expect = e-136,   Method: Composition-based stats.
 Identities = 194/449 (43%), Positives = 289/449 (64%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++  +K++GCQMN YDS +M D+  +  GY+     ++AD+++LNTC IREKA EKV+
Sbjct: 5   MTKKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTEVAEEADVLLLNTCSIREKAQEKVF 64

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR + LK        DL++ V GCVA  EG+ I +R+  V+++ GPQT +RLPE++ 
Sbjct: 65  HQLGRWKLLKEK----NPDLIIGVGGCVASQEGDHIRQRAHYVDIIFGPQTLHRLPEMIN 120

Query: 142 RARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
             R  +  VVD  +   +KF+RL        R  G TAF++I EGC+K+CT+CVVPYTRG
Sbjct: 121 AVRGNRSPVVDISFPEIEKFDRLP-----EPRADGPTAFVSIMEGCNKYCTYCVVPYTRG 175

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR    ++ E  +L   GV E+ LLGQNVNAWRG+  DG   +F+DLL  ++ I G+
Sbjct: 176 EEVSRPCDDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTTGSFADLLRLVAAIDGI 235

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+TTSHP + +D +I+ + D   L+ +LHLPVQSGSDR+L  M R HTA EY+ II 
Sbjct: 236 DRIRFTTSHPIEFTDDIIEVYRDTPELVSFLHLPVQSGSDRVLNLMGRTHTALEYKAIIR 295

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R  RPDI ISSDFIVGFPGET DDF  TM L+  + +  ++SF +S R GTP ++M++
Sbjct: 296 KLREARPDIQISSDFIVGFPGETTDDFEKTMKLIADVNFDMSYSFIFSARPGTPAADMVD 355

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439
            V E  K +RL  LQ+++ +Q ++++   +G +  +L+E   ++   +L GR+   + V 
Sbjct: 356 DVPEEDKKQRLYILQERINQQAMAWSRRMLGTVQRILVEGTSRKSLMELSGRTENNRVVN 415

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  +G  + V I DV  ++L G++V
Sbjct: 416 FEGTPDMVGKFVDVEIVDVYTNSLRGKIV 444


>gi|32034173|ref|ZP_00134395.1| COG0621: 2-methylthioadenine synthetase [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|126208789|ref|YP_001054014.1| hypothetical protein APL_1325 [Actinobacillus pleuropneumoniae L20]
 gi|190150645|ref|YP_001969170.1| hypothetical protein APP7_1376 [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|307263992|ref|ZP_07545593.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Actinobacillus pleuropneumoniae serovar 13 str. N273]
 gi|229890417|sp|A3N1X3|MIAB_ACTP2 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|229890418|sp|B3GYA4|MIAB_ACTP7 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|126097581|gb|ABN74409.1| hypothetical protein APL_1325 [Actinobacillus pleuropneumoniae
           serovar 5b str. L20]
 gi|189915776|gb|ACE62028.1| hypothetical protein APP7_1376 [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|306870681|gb|EFN02424.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Actinobacillus pleuropneumoniae serovar 13 str. N273]
          Length = 475

 Score =  491 bits (1264), Expect = e-136,   Method: Composition-based stats.
 Identities = 204/446 (45%), Positives = 296/446 (66%), Gaps = 12/446 (2%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +  + ++GCQMN YDS +M D+  S  G E  +  ++AD+++LNTC IREKA EKV+S L
Sbjct: 3   KLHITTWGCQMNEYDSSKMADLLNSTHGLELTDKPEEADVLLLNTCSIREKAQEKVFSQL 62

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR +N K    K+  DL++ V GCVA  EGE I  R+P V++V GPQT +RLPE++ + R
Sbjct: 63  GRWKNWK----KDKPDLIIGVGGCVASQEGEHIRDRAPFVDIVFGPQTLHRLPEMINKIR 118

Query: 145 FGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            G R +VD  +   +KF+RL        R  G TAF++I EGC+K+C+FCVVPYTRG E+
Sbjct: 119 GGDRAIVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCSFCVVPYTRGEEV 173

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR +  V+ E  +L + GV E+ LLGQNVNA+RG+  DG  CTF++LL  ++ I G+ R+
Sbjct: 174 SRPVDDVLFEIAQLAEQGVREVNLLGQNVNAYRGETFDGGICTFAELLRLVAAIDGIDRV 233

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           RYTTSHP + +D +I+ + D   L+ +LHLP+QSG+DR+L  M R HTA EY+ II ++R
Sbjct: 234 RYTTSHPIEFTDDIIEVYRDTPELVSFLHLPIQSGADRVLTMMKRNHTALEYKAIIRKLR 293

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
            VRP+I ISSDFIVGFPGET +DF  TM +++++ +  +FSF YS R GTP +++ + + 
Sbjct: 294 EVRPNIQISSDFIVGFPGETAEDFEQTMKVIEQVNFDMSFSFIYSARPGTPAADLPDDIS 353

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNS 442
           E  K ERL  LQ+++  Q + F+ A +G    VL+E   K+   +L GR+   + V    
Sbjct: 354 EEEKKERLARLQQRINHQAMQFSRAMLGTEQRVLVEGPSKKDIMELTGRTENNRIVNFQG 413

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
               IG  + ++ITDV  ++L G++V
Sbjct: 414 TPDMIGKFVDIKITDVYTNSLRGDVV 439


>gi|160896962|ref|YP_001562544.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Delftia
           acidovorans SPH-1]
 gi|229890511|sp|A9BUQ1|MIAB_DELAS RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|160362546|gb|ABX34159.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Delftia acidovorans
           SPH-1]
          Length = 442

 Score =  491 bits (1264), Expect = e-136,   Method: Composition-based stats.
 Identities = 208/451 (46%), Positives = 290/451 (64%), Gaps = 15/451 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++ F+K++GCQMN YDS +M D+   +QGYE  +  + ADLI+ NTC +REKA EKV+
Sbjct: 1   MSKKVFIKTFGCQMNEYDSDKMADVLGAAQGYESTDDPEQADLILFNTCSVREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S LGR ++LK         +L+ V GCVA  EGEEI++R+P V+VV GPQT +RLPELL 
Sbjct: 61  SDLGRYKHLKE------RGVLIGVGGCVASQEGEEIIKRAPYVDVVFGPQTLHRLPELLN 114

Query: 142 -RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
            RA   K  VD  +   +KF+ L        R  G +AF++I EGC K+C++CVVPYTRG
Sbjct: 115 ARAAKHKPQVDISFPEIEKFDHLPPA-----RVEGSSAFVSIMEGCSKYCSYCVVPYTRG 169

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG-EKCTFSDLLYSLSEIKG 259
            E+SR    V+ E   L D GV E+TLLGQNVNA+ GK  D  E   F+ LL  +SEI G
Sbjct: 170 EEVSRPFEDVLIEVAGLADQGVKEVTLLGQNVNAYLGKMGDTAEIADFALLLEYVSEIPG 229

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           + R+RYTTSHP + +  LI+A+  L  L+ +LHLPVQ GSD+IL +M R +TA EY+  I
Sbjct: 230 IERIRYTTSHPNEFTPRLIEAYARLPKLVSHLHLPVQHGSDKILMAMKRGYTAMEYKSTI 289

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            ++R++RP++A+SSDFIVGFPGET++DF+  M L+  + +  +FSF +SPR GTP +N+ 
Sbjct: 290 RKLRAIRPEMAMSSDFIVGFPGETEEDFQKMMKLIHDVRFDNSFSFIFSPRPGTPAANLH 349

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLVGRSPWLQSV 438
           +     VK  RL  LQ  +       +D  VG +  +L+E   K  G +L+GR+   + V
Sbjct: 350 DDTPHEVKLRRLQELQAVINNNIKDISDERVGTVQRLLVEGLSKRDGSELMGRTECNRVV 409

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
                   IG +I V+IT+ +  TL GE+VV
Sbjct: 410 NFPGNERLIGQMIDVKITEARTFTLRGEVVV 440


>gi|84688004|ref|ZP_01015867.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84663985|gb|EAQ10486.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Rhodobacterales bacterium
           HTCC2654]
          Length = 443

 Score =  491 bits (1264), Expect = e-136,   Method: Composition-based stats.
 Identities = 253/452 (55%), Positives = 328/452 (72%), Gaps = 9/452 (1%)

Query: 17  IVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA 76
           + DQ   P++ F+++YGCQMNVYDS RM +    QGY  V S D+AD+I+LNTCHIREKA
Sbjct: 1   MTDQSTDPKKLFIRTYGCQMNVYDSERMAEAMGGQGYVEVGSPDEADMILLNTCHIREKA 60

Query: 77  AEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL 136
           AEKVYS LGR ++LK++      DL + VAGCVAQAEGEEI+RR P+V++VVGPQTY+RL
Sbjct: 61  AEKVYSELGRFKDLKDA----KPDLKIGVAGCVAQAEGEEIMRRQPMVDLVVGPQTYHRL 116

Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
           PE++E+   G++ +DTD+ +EDKFE L         KR  TAFLT+QEGCDKFC FCVVP
Sbjct: 117 PEMVEKVGRGEKALDTDFPLEDKFEVLKNRPTA---KRAPTAFLTVQEGCDKFCAFCVVP 173

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256
           YTRG E+SR   +++ EAR+L++ GV EITLLGQNVNA+ G G DG   + + L+++L++
Sbjct: 174 YTRGAEVSRPPERILREARELVERGVREITLLGQNVNAYHGAG-DGGDWSLARLIWALND 232

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           I GL R+R+TTSHP DMSD LI AHG+   LMPYLHLPVQSGSDRILK MNR+HTA EY 
Sbjct: 233 IDGLERIRFTTSHPNDMSDDLIAAHGECAKLMPYLHLPVQSGSDRILKRMNRKHTAEEYL 292

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
           ++I+RIR+ RPDI IS DFIVGFP ETD DF  T+DL+  + Y QAFSFKYS R GTP +
Sbjct: 293 RLIERIRAARPDILISGDFIVGFPEETDRDFEDTLDLIRAVNYGQAFSFKYSSRPGTPAA 352

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQ 436
                VDE   ++RL  LQ  + EQ     D  VG+ I VL EK G+ +G++ G+S +L 
Sbjct: 353 ERP-LVDEAEASDRLHRLQALINEQARGVMDGMVGREIGVLFEKPGRMEGQMAGKSDYLH 411

Query: 437 SVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           +V + ++    GD+ +VRIT+   ++L G LV
Sbjct: 412 AVHVKAEGIAPGDLRRVRITEAGPNSLAGALV 443


>gi|329847364|ref|ZP_08262392.1| tRNA-i6A37 thiotransferase enzyme MiaB [Asticcacaulis biprosthecum
           C19]
 gi|328842427|gb|EGF91996.1| tRNA-i6A37 thiotransferase enzyme MiaB [Asticcacaulis biprosthecum
           C19]
          Length = 448

 Score =  491 bits (1264), Expect = e-136,   Method: Composition-based stats.
 Identities = 239/446 (53%), Positives = 313/446 (70%), Gaps = 6/446 (1%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++  +K+YGCQMNVYDS RM D+    GYE  +  D ADL++LNTCHIREKAAEKVYS +
Sbjct: 2   KKLHIKTYGCQMNVYDSERMIDILRPLGYEVSDVADGADLVLLNTCHIREKAAEKVYSEI 61

Query: 85  GRIRNLK-NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           GR++ L+     +  G + + VAGCVAQAEG EI+ R+P V++V+GPQ Y++LPEL+ R 
Sbjct: 62  GRLKELRGEKEARGEGRMTIAVAGCVAQAEGIEIMHRAPAVDLVIGPQAYHQLPELIART 121

Query: 144 RFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
              K   +  D++ E KF+ L+          G TAFLT+QEGCDKFCTFCVVPYTRG E
Sbjct: 122 HRAKGERLAADFAPEAKFDALT----SDRTVTGPTAFLTVQEGCDKFCTFCVVPYTRGAE 177

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR ++ ++DEA+ L   GV E+TLLGQNVNA+ G G DG+  T + L+Y+L++I G+ R
Sbjct: 178 WSRPVAAILDEAQALAAKGVRELTLLGQNVNAFNGVGSDGQPSTLAKLMYALADIPGIDR 237

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LRYTTSHP DM D LI AH DL   MPYLHLPVQSGSD+IL++MNR+H    Y  ++ RI
Sbjct: 238 LRYTTSHPNDMGDDLIAAHRDLGAAMPYLHLPVQSGSDKILRAMNRKHGRQAYFDLVARI 297

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           ++ RPD+A+S DFIVGFPGETD DF  T+DLV ++GYA AF+FKYSPR GTP ++M  QV
Sbjct: 298 KAARPDLALSGDFIVGFPGETDKDFEDTLDLVRQVGYASAFTFKYSPRPGTPAASMPNQV 357

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
            E V  ERL  L   + EQQ +F    VG+ +++L EK G+   + +GRSP+LQSV +  
Sbjct: 358 PEAVMDERLQTLNALIIEQQQAFKATLVGKTLDILFEKPGRRDNQAIGRSPYLQSVYVED 417

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
             H IG I+ VRI  V  ++L G L+
Sbjct: 418 ARHLIGQIVPVRIVAVGNNSLQGALL 443


>gi|156934828|ref|YP_001438744.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Cronobacter
           sakazakii ATCC BAA-894]
 gi|229890546|sp|A7MQS5|MIAB_ENTS8 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|156533082|gb|ABU77908.1| hypothetical protein ESA_02675 [Cronobacter sakazakii ATCC BAA-894]
          Length = 474

 Score =  490 bits (1263), Expect = e-136,   Method: Composition-based stats.
 Identities = 191/449 (42%), Positives = 290/449 (64%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++  +K++GCQMN YDS +M D+  +  G+   +  ++AD+++LNTC IREKA EKV+
Sbjct: 1   MTKKLHIKTWGCQMNEYDSSKMADLLETTHGFTLTDVAEEADILLLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR + LK        D+++ V GCVA  EG+ I  R+  V+++ GPQT +RLPE++ 
Sbjct: 61  HQLGRWKTLKEK----NPDVIIGVGGCVASQEGDHIRDRARYVDIIFGPQTLHRLPEMIN 116

Query: 142 RARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           + +  +  VVD  +   +KF+RL        R  G TAF++I EGC+K+CT+CVVPYTRG
Sbjct: 117 QVKGTRSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTYCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR    +V E  +L   GV E+ LLGQNVNAWRG+  DG   TF+DLL  ++ I G+
Sbjct: 172 EEVSRPSDDIVLEIAQLAAQGVREVNLLGQNVNAWRGENYDGTTGTFADLLRLVAAIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+TTSHP + +D +I+ + D   L+ +LHLPVQSGSDR+L  M R HTA EY+ II 
Sbjct: 232 DRIRFTTSHPIEFTDDIIEVYRDTPELVSFLHLPVQSGSDRVLNMMGRTHTALEYKAIIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R+ RPDI ISSDFIVGFPGET  DF  TM L+ ++ +  ++SF +S R GTP ++M++
Sbjct: 292 KLRAARPDIQISSDFIVGFPGETQQDFEQTMKLIAEVNFDMSYSFIFSARPGTPAADMVD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439
            V E  K +RL  LQ+++ +Q ++++   +G    +L+E   ++   +L GR+   + V 
Sbjct: 352 DVPEEEKKQRLYILQERINQQAMAWSRRMLGTTQRILVEGTSRKSIMELSGRTENNRVVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  +G  + V IT+V  ++L G+++
Sbjct: 412 FEGSPDMVGKFVDVEITEVFPNSLRGKVI 440


>gi|84502860|ref|ZP_01000973.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Oceanicola batsensis
           HTCC2597]
 gi|84388843|gb|EAQ01713.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Oceanicola batsensis
           HTCC2597]
          Length = 440

 Score =  490 bits (1263), Expect = e-136,   Method: Composition-based stats.
 Identities = 258/445 (57%), Positives = 327/445 (73%), Gaps = 10/445 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
            P++ F+K+YGCQMNVYDS RM +     GY  V S ++AD+I+LNTCHIREKAAEKVYS
Sbjct: 3   TPRKLFIKTYGCQMNVYDSERMAEALGGSGYTEVGSPEEADMILLNTCHIREKAAEKVYS 62

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            LGR ++LK +      DL + VAGCVAQAEGEEI+RR P+V++VVGPQ+Y+RLPE+  +
Sbjct: 63  ELGRYKDLKAA----KPDLKIGVAGCVAQAEGEEIIRRQPMVDLVVGPQSYHRLPEMEAK 118

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           A   ++VVDTD+  EDKFERL         KRG TAFLT+QEGCDKFC FCVVPYTRG E
Sbjct: 119 AGT-EKVVDTDFPEEDKFERLKARP---KAKRGPTAFLTVQEGCDKFCAFCVVPYTRGAE 174

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR +++V+ EAR L++ GV EITLLGQNVNA+ G+G DG   + + L+  L+EI+GL R
Sbjct: 175 VSRPVARVLTEARDLVERGVREITLLGQNVNAYHGEGPDGRDWSLAGLIRELAEIEGLER 234

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP DMSD LI AHG++  LMPYLHLPVQSGSDRILK MNR H    Y ++IDRI
Sbjct: 235 IRFTTSHPNDMSDDLIAAHGEVGKLMPYLHLPVQSGSDRILKRMNRSHDRDSYLRLIDRI 294

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+ RPDI IS DFIVGFP ETD DFR TM L++++ Y QAFSFKYS R GTP +   EQV
Sbjct: 295 RAARPDILISGDFIVGFPEETDADFRDTMRLIEEVRYGQAFSFKYSTRPGTPAAE-REQV 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
            E VK+ RL  LQ  +  QQ +  DA VGQ + VLIE+ G+  G++VG+S  L +V L +
Sbjct: 354 AEEVKSARLQELQALITRQQRAVQDAMVGQTVGVLIERAGRMPGQMVGKSDHLHAVHLTA 413

Query: 443 KNHNIGDIIKVRITDVKISTLYGEL 467
            +   GD+++VRIT+   ++L G L
Sbjct: 414 -DLAPGDLVRVRITESGPNSLGGVL 437


>gi|206578177|ref|YP_002239691.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Klebsiella pneumoniae
           342]
 gi|288936533|ref|YP_003440592.1| RNA modification enzyme, MiaB family [Klebsiella variicola At-22]
 gi|229890612|sp|B5XZQ0|MIAB_KLEP3 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|206567235|gb|ACI09011.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Klebsiella pneumoniae
           342]
 gi|288891242|gb|ADC59560.1| RNA modification enzyme, MiaB family [Klebsiella variicola At-22]
          Length = 474

 Score =  490 bits (1263), Expect = e-136,   Method: Composition-based stats.
 Identities = 194/449 (43%), Positives = 289/449 (64%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++  +K++GCQMN YDS +M D+  +  GY+     ++AD+++LNTC IREKA EKV+
Sbjct: 1   MTKKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTEVAEEADVLLLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR + LK        DL++ V GCVA  EG+ I +R+  V+++ GPQT +RLPE++ 
Sbjct: 61  HQLGRWKLLKEK----NPDLIIGVGGCVASQEGDHIRQRAHYVDIIFGPQTLHRLPEMIN 116

Query: 142 RARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
             R  +  VVD  +   +KF+RL        R  G TAF++I EGC+K+CT+CVVPYTRG
Sbjct: 117 AVRGNRSPVVDISFPEIEKFDRLP-----EPRADGPTAFVSIMEGCNKYCTYCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR    ++ E  +L   GV E+ LLGQNVNAWRG+  DG   +F+DLL  ++ I G+
Sbjct: 172 EEVSRPCDDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTTGSFADLLRLVAAIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+TTSHP + +D +I+ + D   L+ +LHLPVQSGSDR+L  M R HTA EY+ II 
Sbjct: 232 DRIRFTTSHPIEFTDDIIEVYRDTPELVSFLHLPVQSGSDRVLNLMGRTHTALEYKAIIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R  RPDI ISSDFIVGFPGET DDF  TM L+  + +  ++SF +S R GTP ++M++
Sbjct: 292 KLREARPDIQISSDFIVGFPGETTDDFEKTMKLIADVNFDMSYSFIFSARPGTPAADMVD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439
            V E  K +RL  LQ+++ +Q ++++   +G +  +L+E   ++   +L GR+   + V 
Sbjct: 352 DVPEEDKKQRLYILQERINQQAMAWSRRMLGTVQRILVEGTSRKSLMELSGRTENNRVVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  +G  + V I DV  ++L G++V
Sbjct: 412 FEGTPDMVGKFVDVEIVDVYTNSLRGKIV 440


>gi|229587170|ref|YP_002845671.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Rickettsia
           africae ESF-5]
 gi|228022220|gb|ACP53928.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Rickettsia africae ESF-5]
          Length = 445

 Score =  490 bits (1263), Expect = e-136,   Method: Composition-based stats.
 Identities = 237/449 (52%), Positives = 336/449 (74%), Gaps = 7/449 (1%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + ++ ++K+YGCQMNVYDS++M+D+ +  GYE   ++++AD+I+LNTCHIREKAAEK YS
Sbjct: 1   MSKKLYIKTYGCQMNVYDSVKMQDLLYPFGYEPTENIEEADVIILNTCHIREKAAEKTYS 60

Query: 83  FLGRIRNLKNSRIKEG-GDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
            LGRI+ L+++R K+G    ++VVAGCVAQAEGEEI  R+P V++VVGPQ+YY LPEL+ 
Sbjct: 61  ELGRIKKLQDTRTKQGLSSAIIVVAGCVAQAEGEEIFTRTPYVDIVVGPQSYYNLPELIS 120

Query: 142 RA-RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           +  R  K ++D D+  E KF++L          +G +AF+++QEGCDKFCTFCVVPYTRG
Sbjct: 121 KVVRHEKHLIDLDFVEEAKFDQLP----EQLYPQGTSAFISVQEGCDKFCTFCVVPYTRG 176

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E SR++ QV  EA K++ +G  EI LLGQNVNA+ GKG   +  + +DLL  L++I  L
Sbjct: 177 AEFSRNVEQVYREALKVVSSGAKEIMLLGQNVNAYHGKGPADKIFSLADLLKHLAQIPNL 236

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            RLRYTTSHP DM++ LIK +G    LMP+LHLPVQSGS++ILK+MNR+H    Y  II+
Sbjct: 237 ERLRYTTSHPIDMNNDLIKLYGTEPKLMPFLHLPVQSGSNKILKAMNRKHDREYYFDIIN 296

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           R+R  RPDI +SSDFIVGFPGETD+DF  T+DLV ++ Y Q +SFKYSPR GTPG+   +
Sbjct: 297 RLREARPDIVLSSDFIVGFPGETDEDFEDTLDLVRRVKYGQCYSFKYSPRPGTPGATRTD 356

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440
           Q+ E++K+ERL  LQ++L  QQ++FN +CVG  ++VL +++GK   +++G++P++QSV +
Sbjct: 357 QIPEHIKSERLTILQQELMAQQLAFNTSCVGSTMKVLFDRNGKFDDQIIGKTPYMQSVYI 416

Query: 441 NSKN-HNIGDIIKVRITDVKISTLYGELV 468
            + N   +G II V+IT   +++L GE++
Sbjct: 417 QNPNKSLLGKIIDVKITKASLNSLTGEIL 445


>gi|157829079|ref|YP_001495321.1| hypothetical protein A1G_06820 [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|165933804|ref|YP_001650593.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Rickettsia
           rickettsii str. Iowa]
 gi|229890634|sp|B0BVC7|MIAB_RICRO RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|229890635|sp|A8GTT8|MIAB_RICRS RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|157801560|gb|ABV76813.1| hypothetical protein A1G_06820 [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|165908891|gb|ABY73187.1| tRNA 2-methylthioadenosine synthase [Rickettsia rickettsii str.
           Iowa]
          Length = 445

 Score =  490 bits (1263), Expect = e-136,   Method: Composition-based stats.
 Identities = 237/449 (52%), Positives = 336/449 (74%), Gaps = 7/449 (1%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + ++ ++K+YGCQMNVYDS++M+D+ +  GYE   ++++AD+I+LNTCHIREKAAEK YS
Sbjct: 1   MSKKLYIKTYGCQMNVYDSIKMQDLLYPFGYEPTENIEEADVIILNTCHIREKAAEKTYS 60

Query: 83  FLGRIRNLKNSRIKEG-GDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
            LGRI+ L+++R K+G    ++VVAGCVAQAEGEEI  R+P V++VVGPQ+YY LPEL+ 
Sbjct: 61  ELGRIKKLQDTRTKQGLSSAIIVVAGCVAQAEGEEIFTRTPYVDIVVGPQSYYNLPELIS 120

Query: 142 RA-RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           +  R  K ++D D+  E KF++L          +G +AF+++QEGCDKFCTFCVVPYTRG
Sbjct: 121 KVVRHEKHLIDLDFVEEAKFDQLP----EQLYPQGTSAFISVQEGCDKFCTFCVVPYTRG 176

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E SR++ QV  EA K++ +G  EI LLGQNVNA+ GKG   +  + +DLL  L++I  L
Sbjct: 177 AEFSRNVEQVYREALKVVSSGAKEIMLLGQNVNAYHGKGPADKIFSLADLLKHLAQIPNL 236

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            RLRYTTSHP DM++ LIK +G    LMP+LHLPVQSGS++ILK+MNR+H    Y  II+
Sbjct: 237 ERLRYTTSHPIDMNNDLIKLYGTEPKLMPFLHLPVQSGSNKILKAMNRKHDREYYFDIIN 296

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           R+R  RPDI +SSDFIVGFPGETD+DF  T+DLV ++ Y Q +SFKYSPR GTPG+   +
Sbjct: 297 RLREARPDIVLSSDFIVGFPGETDEDFEDTLDLVRRVKYGQCYSFKYSPRPGTPGATRTD 356

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440
           Q+ E++K+ERL  LQ++L  QQ++FN +CVG  ++VL +++GK   +++G++P++QSV +
Sbjct: 357 QIPEHIKSERLTILQQELMAQQLAFNTSCVGSTMKVLFDRNGKFDDQIIGKTPYMQSVYI 416

Query: 441 NSKN-HNIGDIIKVRITDVKISTLYGELV 468
            + N   +G II V+IT   +++L GE++
Sbjct: 417 QNPNKSLLGKIIDVKITKASLNSLTGEIL 445


>gi|221065180|ref|ZP_03541285.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Comamonas testosteroni
           KF-1]
 gi|220710203|gb|EED65571.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Comamonas testosteroni
           KF-1]
          Length = 442

 Score =  490 bits (1262), Expect = e-136,   Method: Composition-based stats.
 Identities = 207/451 (45%), Positives = 293/451 (64%), Gaps = 15/451 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++ F+K++GCQMN YDS +M D+   +QGYE   ++D+ADLI+ NTC +REKA EKV+
Sbjct: 1   MSKKVFIKTFGCQMNEYDSDKMADVLGAAQGYEPTQNVDEADLILFNTCSVREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL- 140
           S LGRIR+LK         +L+ V GCVA  EG EI++R+P V+VV GPQT +RLPELL 
Sbjct: 61  SDLGRIRHLKEK------GVLIGVGGCVASQEGAEIIKRAPFVDVVFGPQTLHRLPELLN 114

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           +RA   K  VD  +   +KF+ L        R  G +AF++I EGC K+C++CVVPYTRG
Sbjct: 115 QRAAKAKPQVDISFPEIEKFDHLPPA-----RVEGASAFVSIMEGCSKYCSYCVVPYTRG 169

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG-EKCTFSDLLYSLSEIKG 259
            E+SR    V+ E   L + GV EITLLGQNVNA+ GK  D  E   F+ LL  ++EI G
Sbjct: 170 EEVSRPFEDVLVEVAGLAEQGVKEITLLGQNVNAYLGKMGDTSEMADFALLLEYVAEIPG 229

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           + R+RYTTSHP + +  LI+A+  +  L+ +LHLPVQ GSD+IL +M R +TA EY+  I
Sbjct: 230 IERIRYTTSHPNEFTPRLIEAYARIPQLVSHLHLPVQHGSDKILMAMKRGYTAMEYKSTI 289

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            ++R++RPD+A+SSDFIVGFPGET++DF+  M L+  + +  +FSF +SPR GTP +N+ 
Sbjct: 290 RKLRAIRPDLAMSSDFIVGFPGETEEDFQKMMKLIHDVRFDNSFSFIFSPRPGTPAANLH 349

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLVGRSPWLQSV 438
           +     VK  RL  LQ  +       ++  VG +  +LIE   K  G +L+GR+   + V
Sbjct: 350 DDTPHEVKLRRLQELQAVINSHIKEISEERVGTVQRLLIEGVSKRDGSELMGRTYCNRVV 409

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
                   IG ++ V+IT+ K  TL GE+++
Sbjct: 410 NFPGNARLIGQMVDVKITEAKAYTLRGEVLL 440


>gi|149186041|ref|ZP_01864355.1| 2-methylthioadenine synthetase [Erythrobacter sp. SD-21]
 gi|148830072|gb|EDL48509.1| 2-methylthioadenine synthetase [Erythrobacter sp. SD-21]
          Length = 449

 Score =  490 bits (1262), Expect = e-136,   Method: Composition-based stats.
 Identities = 243/450 (54%), Positives = 316/450 (70%), Gaps = 9/450 (2%)

Query: 18  VDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA 77
           +     P+ + VKS+GCQMNVYD  RM +M   QG       ++ADL+VLNTCHIREKAA
Sbjct: 1   MKPTNSPKTYRVKSFGCQMNVYDGERMAEMLGEQGIVPAPEGEEADLVVLNTCHIREKAA 60

Query: 78  EKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLP 137
           EKVYS +GR+     +  K G + L+ VAGCVAQAEGEEI++RSP V++VVGPQ Y+RLP
Sbjct: 61  EKVYSDIGRLAK---AGRKAGKEPLIAVAGCVAQAEGEEIMKRSPAVSMVVGPQAYHRLP 117

Query: 138 ELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197
           E+L++A  G+R  DTD     KF  L        R+    +FLT+QEGCDKFCT+CVVPY
Sbjct: 118 EMLDKAVKGERATDTDMPAIAKFAALP-----ERRRTNPASFLTVQEGCDKFCTYCVVPY 172

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257
           TRG EISR  + +V EA+KL+D G  EITLLGQNV+AW G+   G +   + L+  L+++
Sbjct: 173 TRGAEISRPYADLVTEAKKLVDAGAKEITLLGQNVSAWSGEDEKGHRVGLAGLIRDLAKV 232

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
            GL R+RYTTSHP DM D LI AHG++D LMP+LHLPVQ+GSDR+LK+MNR HTA  Y +
Sbjct: 233 DGLARIRYTTSHPADMDDDLIAAHGEIDKLMPFLHLPVQAGSDRVLKAMNRSHTAESYLK 292

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
           ++DR R+ RPD+A+S DFIVGFPGETD +F  T+ LVD++ YAQAFSFKYSPR GTP + 
Sbjct: 293 LLDRFRAARPDLALSGDFIVGFPGETDAEFEETLALVDEVRYAQAFSFKYSPRPGTPAAT 352

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQS 437
           M  QV + V  ERL  LQ  L   Q++FN+A VG+  EVL+E+ GK  G+ +G+SPWLQS
Sbjct: 353 MDGQVSKEVMDERLQRLQAALNRDQLAFNEASVGKTCEVLVERKGKHAGQWLGKSPWLQS 412

Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
           V        IGD+++  + +   ++L G L
Sbjct: 413 VWFEG-EARIGDLVQAELVEAGPNSLAGRL 441


>gi|294676663|ref|YP_003577278.1| MiaB family RNA modification enzyme [Rhodobacter capsulatus SB
           1003]
 gi|294475483|gb|ADE84871.1| RNA modification enzyme, MiaB family [Rhodobacter capsulatus SB
           1003]
          Length = 439

 Score =  490 bits (1262), Expect = e-136,   Method: Composition-based stats.
 Identities = 232/446 (52%), Positives = 308/446 (69%), Gaps = 10/446 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
            P++  +K+YGCQMNVYDS RM +    QGY   +   +AD+++LNTCHIREKAAEKVYS
Sbjct: 4   APKKLHIKTYGCQMNVYDSERMAEAMGVQGYTLTDDPAEADMVLLNTCHIREKAAEKVYS 63

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            LGR+R  K +       L + VAGCVAQAEG EI+RR P+V++VVG Q Y+RLPE++  
Sbjct: 64  DLGRLRPFKEA----KPGLTIGVAGCVAQAEGAEIMRRMPLVDLVVGSQNYHRLPEMVAA 119

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
              G+R VDT++  EDKFERL             TAFLT+QEGCDKFC FCVVPYTRG E
Sbjct: 120 VGRGERPVDTEFPAEDKFERLPERPVQAR----PTAFLTVQEGCDKFCAFCVVPYTRGAE 175

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           ISR +++++ EA KL+  GV EITLLGQNVN + G G DG       L+ +L+ I GL R
Sbjct: 176 ISRPVARILTEAEKLVAKGVREITLLGQNVNGYHGDGPDGS-WGLGRLVRALARIDGLDR 234

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +RYTTSHP DM++ LI AHGD   LMPYLHLPVQSGSD ILK+MNR+HTA +Y ++++R+
Sbjct: 235 IRYTTSHPNDMAEDLIAAHGDEPKLMPYLHLPVQSGSDPILKAMNRKHTAEDYLRLVERL 294

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+ RPD+ +SSDFIVGFPGET+ D +A++DL+  +G+  AFSFKYSPR GTP ++    V
Sbjct: 295 RAARPDLVLSSDFIVGFPGETEADHQASLDLIRAVGFGAAFSFKYSPRPGTPAASRTP-V 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
              V   RL  LQ  +  QQ +   + VG+ + VL EK G+  G+ VG+S +L +V + +
Sbjct: 354 AAEVADARLQELQALITAQQKATQLSMVGRKVGVLFEKPGRLPGQWVGKSDYLHAVHVTA 413

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
           +    G + +VRIT    ++L GE++
Sbjct: 414 EGIGPGTLAQVRITASAPNSLAGEVL 439


>gi|148251670|ref|YP_001236255.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bradyrhizobium
           sp. BTAi1]
 gi|229890449|sp|A5E855|MIAB_BRASB RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|146403843|gb|ABQ32349.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bradyrhizobium sp. BTAi1]
          Length = 466

 Score =  490 bits (1261), Expect = e-136,   Method: Composition-based stats.
 Identities = 241/444 (54%), Positives = 325/444 (73%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P++  +KSYGCQMNVYD+ RM D   ++G+       DADL++LNTCHIREKA+EKVYS 
Sbjct: 4   PRKLHIKSYGCQMNVYDAQRMVDTLGAEGFVETAEAGDADLVILNTCHIREKASEKVYSE 63

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR+R  K    ++G  + + VAGCVAQAEG EI+ R+P V+VVVGPQ+Y+ LPELL RA
Sbjct: 64  LGRLRVAKEEAARQGRAMQIAVAGCVAQAEGAEIVTRAPTVDVVVGPQSYHHLPELLARA 123

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             G+  ++T++  EDKF  L+       R RGV+AF+T+QEGCDKFCTFCVVPYTRG E+
Sbjct: 124 GRGEPAIETEFPAEDKFGFLARPSREAIRARGVSAFVTVQEGCDKFCTFCVVPYTRGSEM 183

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR +++++DE  +L +NGV EITL+GQNVNA+ G+  DG   T   LLY ++EI G+ R+
Sbjct: 184 SRPVARILDEVTRLTENGVREITLIGQNVNAYHGEAPDGSTWTLGRLLYGIAEIPGVARI 243

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           RY+TSHP D+ D LI AH DL  +MP++HLPVQSGSDRIL  MNR+H A +YR+++DR R
Sbjct: 244 RYSTSHPNDVDDSLIAAHRDLASVMPFVHLPVQSGSDRILGLMNRKHGASDYRKVVDRFR 303

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           + RPDIA SSDFIVGFPGET++DFRAT+ L+ +IGYA A+SFKYSPR GTP ++M E V 
Sbjct: 304 AARPDIAFSSDFIVGFPGETEEDFRATLALIAQIGYAAAYSFKYSPRPGTPAADMQEMVS 363

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
                ERL  LQ  +  QQ +FN A +G +++VL E+  ++ G+LVGR+ +LQ   + + 
Sbjct: 364 ATEMDERLERLQSLIDSQQAAFNKAAIGTVVDVLFERAARKPGQLVGRTAYLQPAHVMAP 423

Query: 444 NHNIGDIIKVRITDVKISTLYGEL 467
           ++ IG ++ VRI  ++  +L GEL
Sbjct: 424 DNIIGQVLPVRIDSLERYSLLGEL 447


>gi|304413678|ref|ZP_07395122.1| 2-methylthioadenine synthetase [Candidatus Regiella insecticola
           LSR1]
 gi|304283769|gb|EFL92163.1| 2-methylthioadenine synthetase [Candidatus Regiella insecticola
           LSR1]
          Length = 475

 Score =  490 bits (1261), Expect = e-136,   Method: Composition-based stats.
 Identities = 202/449 (44%), Positives = 288/449 (64%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++  +K++GCQMN YDS +M D+     GY+     ++ADL++LNTC IREKA EKV+
Sbjct: 1   MIKKLHIKTWGCQMNEYDSSKMADLLAKTHGYQLTEVPEEADLLLLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR + LK+S      +LL+ V GCVA  EGE I +R+P V+++ GPQT +RLPE++ 
Sbjct: 61  HLLGRWKLLKDS----NPNLLIGVGGCVASQEGENIRQRAPCVDIIFGPQTLHRLPEMIN 116

Query: 142 RARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           + +  +  VVD  +   +KF+ L        R  G +AF++I EGC+K+CTFCVVPYTRG
Sbjct: 117 QVQGSRSAVVDISFPEIEKFDCLP-----EPRANGPSAFVSIMEGCNKYCTFCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR    ++ E  +L +  V E+ LLGQNVNA+RG   DG  C+F++LL  ++ I G+
Sbjct: 172 EEVSRPCDDILFEIAQLAEQNVREVNLLGQNVNAYRGATYDGNICSFAELLRLVAAIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+TTSHP + +D +IK + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II 
Sbjct: 232 DRVRFTTSHPIEFTDDIIKVYEDTPELVSFLHLPVQSGSDRILTMMKRAHTALEYKAIIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R  RPDI ISSDFIVGFPGET DDF  TM L+ ++ +  ++SF YS R GTP +++ +
Sbjct: 292 KLRKARPDIQISSDFIVGFPGETQDDFEHTMKLIAEVNFDTSYSFIYSSRPGTPAADLPD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439
            V E  K +RL  LQ+++ +Q + F+ A VG I  VL+E   ++   +L GR+   + V 
Sbjct: 352 NVSEEEKKQRLHILQQRISQQAMHFSRAMVGTIQRVLVEGPSRKNLMELAGRTENNRVVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG  + V I  V  S+L G  V
Sbjct: 412 FEGSPDMIGKFVDVEIVSVYASSLRGVPV 440


>gi|307246244|ref|ZP_07528325.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|307255228|ref|ZP_07537043.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|307257391|ref|ZP_07539161.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Actinobacillus pleuropneumoniae serovar 10 str. D13039]
 gi|307259662|ref|ZP_07541386.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Actinobacillus pleuropneumoniae serovar 11 str. 56153]
 gi|306852853|gb|EFM85077.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|306861777|gb|EFM93756.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|306864241|gb|EFM96154.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Actinobacillus pleuropneumoniae serovar 10 str. D13039]
 gi|306866307|gb|EFM98171.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Actinobacillus pleuropneumoniae serovar 11 str. 56153]
          Length = 475

 Score =  490 bits (1261), Expect = e-136,   Method: Composition-based stats.
 Identities = 203/446 (45%), Positives = 295/446 (66%), Gaps = 12/446 (2%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +  + ++GCQMN YDS +M D+  S  G E  +  ++AD+++LNTC IREKA EKV+S L
Sbjct: 3   KLHITTWGCQMNEYDSSKMADLLNSTHGLELTDKPEEADVLLLNTCSIREKAQEKVFSQL 62

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR +N K    K+  DL++ V GCVA  EGE I  R+P V++V GPQT +RLPE++ + R
Sbjct: 63  GRWKNWK----KDKPDLIIGVGGCVASQEGEHIRDRAPFVDIVFGPQTLHRLPEMINKIR 118

Query: 145 FGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            G R +VD  +   +KF+RL        R  G TAF++I EGC+K+C+FCVVPYTRG E+
Sbjct: 119 GGDRAIVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCSFCVVPYTRGEEV 173

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR +  V+ E  +L + GV E+ LLGQNVNA+RG+  DG  CTF++LL  ++ I G+ R+
Sbjct: 174 SRPVDDVLFEIAQLAEQGVREVNLLGQNVNAYRGETFDGGICTFAELLRLVAAIDGIDRV 233

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           RYTTSHP + +D +I+ + D   L+ +LHLP+QSG+DR+L  M R HTA EY+ II ++R
Sbjct: 234 RYTTSHPIEFTDDIIEVYRDTPELVSFLHLPIQSGADRVLTMMKRNHTALEYKAIIRKLR 293

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
            VRP+I ISSDFIVGFPGET +DF  TM +++++ +  +FSF YS R GTP +++ + + 
Sbjct: 294 EVRPNIQISSDFIVGFPGETAEDFEQTMKVIEQVNFDMSFSFIYSARPGTPAADLPDDIS 353

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNS 442
           E  K  RL  LQ+++  Q + F+ A +G    VL+E   K+   +L GR+   + V    
Sbjct: 354 EEEKKARLARLQQRINHQAMQFSRAMLGTEQRVLVEGPSKKDIMELTGRTENNRIVNFQG 413

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
               IG  + ++ITDV  ++L G++V
Sbjct: 414 TPDMIGKFVDIKITDVYTNSLRGDVV 439


>gi|304393798|ref|ZP_07375723.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Ahrensia sp. R2A130]
 gi|303293997|gb|EFL88372.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Ahrensia sp. R2A130]
          Length = 477

 Score =  490 bits (1261), Expect = e-136,   Method: Composition-based stats.
 Identities = 268/451 (59%), Positives = 337/451 (74%), Gaps = 1/451 (0%)

Query: 15  SQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIRE 74
           ++  +     ++ F+K++GCQMNVYDS RM D   + GY    +M+DADL++LNTCHIRE
Sbjct: 5   TKKPEPQAPTKKVFIKTWGCQMNVYDSTRMSDALEADGYAPTTTMEDADLVLLNTCHIRE 64

Query: 75  KAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYY 134
           KAAEKVYS LGRIR LK +R      L + V GCVAQAEG+EI+RR   V++VVGPQTY+
Sbjct: 65  KAAEKVYSNLGRIRQLKETRAGTDRPLTIGVTGCVAQAEGQEIIRRERAVDLVVGPQTYH 124

Query: 135 RLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCV 194
           RLPE++ R++ G +V DT+Y+VEDKFE L++      + RGVTAFLT+QEGCDKFCTFCV
Sbjct: 125 RLPEIVTRSKSGPQV-DTEYAVEDKFEHLALPKKRQVQARGVTAFLTVQEGCDKFCTFCV 183

Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL 254
           VPYTRG E+SR L+Q++DEAR LID GV EITLLGQNVNAW G    G +     LL+ L
Sbjct: 184 VPYTRGAEVSRPLAQILDEARALIDAGVREITLLGQNVNAWHGVDGTGRELGLGHLLHHL 243

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
           + + G+ RLRY TSHPRDM+D LI+AH DLD LMPYLHLPVQ+GSD+ILKSMNR HT+ +
Sbjct: 244 AALPGIARLRYVTSHPRDMADDLIEAHRDLDCLMPYLHLPVQAGSDKILKSMNRGHTSAD 303

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
           Y  II+R+R  RPDIAIS D IVGFPGETDDDF ATM++V +  YA  +SFKYS R GTP
Sbjct: 304 YLSIINRVREARPDIAISGDMIVGFPGETDDDFEATMEIVRQTNYAACYSFKYSMRPGTP 363

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPW 434
           G+ M +QVDE VK ERL  LQ  L +QQ +FN AC+G+ I+VLIEK G+ + + +GRSPW
Sbjct: 364 GAEMTDQVDEAVKTERLARLQALLSDQQKAFNAACIGKTIDVLIEKPGRTEDQWIGRSPW 423

Query: 435 LQSVVLNSKNHNIGDIIKVRITDVKISTLYG 465
           LQSVV+      IGDI+ V +   + ++L G
Sbjct: 424 LQSVVMPRTLGAIGDIVSVDVIAAQANSLMG 454


>gi|123443200|ref|YP_001007174.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Yersinia
           enterocolitica subsp. enterocolitica 8081]
 gi|229891035|sp|A1JQA3|MIAB_YERE8 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|122090161|emb|CAL13024.1| putative tRNA-thiotransferase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 474

 Score =  489 bits (1260), Expect = e-136,   Method: Composition-based stats.
 Identities = 200/449 (44%), Positives = 286/449 (63%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++  +K++GCQMN YDS +M D+  S  GY+     ++ADL++LNTC IREKA EKV+
Sbjct: 1   MTKKLHIKTWGCQMNEYDSSKMADLLASTHGYQLTEIPEEADLLLLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S LG+ + LK        +L++ V GCVA  EGE + +R+P V+V+ GPQT +RLPE++ 
Sbjct: 61  SLLGQWKLLKEK----NPELIIGVGGCVASQEGEHLRQRAPCVDVIFGPQTLHRLPEMIN 116

Query: 142 RAR-FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
             +     VVD  +   +KF+RL        R  G TAF++I EGC+K+CTFCVVPYTRG
Sbjct: 117 HVQGTHSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTFCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR    ++ E  +L   GV E+ LLGQNVNA+RG   DG+ C+F++LL  ++ I G+
Sbjct: 172 EEVSRPSDDILFEIAQLAAQGVREVNLLGQNVNAYRGATYDGDICSFAELLRLVAAIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+TTSHP + +D +I  + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II 
Sbjct: 232 DRVRFTTSHPIEFTDDIIDVYRDTPELVSFLHLPVQSGSDRILTMMKRAHTALEYKAIIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R  RPDI ISSDFI+GFPGET  DF  TM LV  + +  ++SF YSPR GTP +++ +
Sbjct: 292 KLRQARPDIQISSDFIIGFPGETQQDFEQTMKLVADVRFDTSYSFIYSPRPGTPAADLPD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439
            V E  K +RL  LQ+++ +Q +  +   VG +  +L+E   ++   +L GR+   + V 
Sbjct: 352 DVSEEEKKQRLHILQQRITQQAMEISREMVGTVQRILVEGTSRKNVMELAGRTENNRVVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG  + V I DV  S+L G L+
Sbjct: 412 FEGTPEMIGKFVDVEIVDVYASSLRGILL 440


>gi|296532216|ref|ZP_06894966.1| MiaB family RNA modification enzyme [Roseomonas cervicalis ATCC
           49957]
 gi|296267460|gb|EFH13335.1| MiaB family RNA modification enzyme [Roseomonas cervicalis ATCC
           49957]
          Length = 464

 Score =  489 bits (1260), Expect = e-136,   Method: Composition-based stats.
 Identities = 242/460 (52%), Positives = 318/460 (69%), Gaps = 8/460 (1%)

Query: 13  MVSQIVDQCIV---PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNT 69
           M S   +  +     ++ F++++GCQMNVYDS RM D+    GY    + ++AD+++LNT
Sbjct: 1   MTSPAPESPLAAPQRKKLFIRTWGCQMNVYDSTRMADVLAPLGYGPAETPEEADMVILNT 60

Query: 70  CHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG 129
           CHIREKA+EKV+S LGR+R LK  + + G  +++ VAGCVAQAEG EI  R+P V++V+G
Sbjct: 61  CHIREKASEKVFSDLGRLRLLKTEKEQAGQKMVLAVAGCVAQAEGAEITVRAPWVDIVLG 120

Query: 130 PQTYYRLPELLERA-RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
           PQTY+RLPE++ RA R     +DTD+ VE KF+ L  V+      +G  AFLTIQEGCDK
Sbjct: 121 PQTYHRLPEMVARASRAAGAQIDTDFPVEQKFDLLPEVNAN----QGPIAFLTIQEGCDK 176

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS 248
           FC+FCVVPYTRG E SR ++ ++ EAR+L+  G  EI LLGQNVNAW G+  DG   + S
Sbjct: 177 FCSFCVVPYTRGAEFSRPVAAILAEARRLVAGGAREIALLGQNVNAWHGEAPDGSTWSLS 236

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
            LLY+L+EI GL R+RYTTSHPRDM D LI+AHG +  LMP+LHLPVQSGSD++L +MNR
Sbjct: 237 RLLYALAEIDGLARIRYTTSHPRDMDDALIEAHGRIPQLMPFLHLPVQSGSDKVLAAMNR 296

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
            H A  + +I DR+R  RPD+A+SSDFIVG PGET  D  ATM LV+K+G+A A+SFKYS
Sbjct: 297 GHKAELFYRIADRLREARPDMALSSDFIVGHPGETAADHAATMQLVEKVGFALAYSFKYS 356

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL 428
           PR GTP +    QV E  K  RL  LQ  LR QQ  FN ACVG+ +++L    G+  G++
Sbjct: 357 PRPGTPAAGQPFQVPEAEKDARLQELQAVLRRQQDEFNRACVGREVDILWTGPGRHPGQI 416

Query: 429 VGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            GR+PWLQ V         G I +VR+TD   ++L   L+
Sbjct: 417 AGRTPWLQPVHAIGPAELAGRIARVRLTDAHPNSLSAVLL 456


>gi|254463508|ref|ZP_05076924.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Rhodobacterales bacterium
           HTCC2083]
 gi|206680097|gb|EDZ44584.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Rhodobacteraceae
           bacterium HTCC2083]
          Length = 440

 Score =  489 bits (1260), Expect = e-136,   Method: Composition-based stats.
 Identities = 237/444 (53%), Positives = 321/444 (72%), Gaps = 8/444 (1%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F+K+YGCQMNVYDS RM +   + GY    + DDAD+I+LNTCHIREKAAEK+YS L
Sbjct: 5   KKLFIKTYGCQMNVYDSERMSEALGASGYTETQTPDDADMILLNTCHIREKAAEKIYSEL 64

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR+++LK +      DL + VAGCVAQAEG EI+RR P V++VVGPQ+Y+RL E+  + R
Sbjct: 65  GRMKSLKTA----KPDLKIGVAGCVAQAEGAEIMRRQPAVDLVVGPQSYHRLAEMEIKTR 120

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G++ +DTD+ +EDKFE L         +R   AFLT+QEGCDKFC FCVVPYTRG E S
Sbjct: 121 RGEKALDTDFPIEDKFEALKHRP---KARRAPAAFLTVQEGCDKFCAFCVVPYTRGAETS 177

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R + ++VDEA+ L++ GV EITLLGQNVNA+ G G DG +   + L++ L ++ GL R+R
Sbjct: 178 RPVQRIVDEAKNLVERGVREITLLGQNVNAYHGTGPDGNEWGLAQLIWELDKVDGLARIR 237

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +TTSHP DM D LI AH     LMPYLHLPVQSGSDRILK MNR HTA  Y ++I+RIR+
Sbjct: 238 FTTSHPNDMQDDLIDAHAHCAKLMPYLHLPVQSGSDRILKRMNRSHTADSYLRLIERIRA 297

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
            RPDI +S DFIVGFP ET++DF+AT+DL+ ++ Y  A+SFKYS R GTP +    QV++
Sbjct: 298 ARPDILMSGDFIVGFPEETEEDFQATLDLIKEVRYGYAYSFKYSTRPGTPAAERA-QVED 356

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
            V AERL  LQ  + +QQV   ++ VG+ + +LIEK G++ G++VG+S +L +V +N  +
Sbjct: 357 AVAAERLQRLQALITQQQVEIQNSMVGRDVTILIEKQGRDSGQMVGKSEYLHAVHINDCD 416

Query: 445 HNIGDIIKVRITDVKISTLYGELV 468
              GD+++ RIT+   ++L G ++
Sbjct: 417 AIPGDLVQARITEAVRNSLAGTMI 440


>gi|27375906|ref|NP_767435.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bradyrhizobium
           japonicum USDA 110]
 gi|81740085|sp|Q89W97|MIAB_BRAJA RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|27349044|dbj|BAC46060.1| bll0795 [Bradyrhizobium japonicum USDA 110]
          Length = 465

 Score =  489 bits (1260), Expect = e-136,   Method: Composition-based stats.
 Identities = 243/446 (54%), Positives = 324/446 (72%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P++  +KSYGCQMNVYD+ RM D    +G+    S +DADL++LNTCHIREKA+EKVYS 
Sbjct: 4   PRKLHIKSYGCQMNVYDAQRMVDTLAPEGFVETASAEDADLVILNTCHIREKASEKVYSE 63

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR+R  K+   + G  + + VAGCVAQAEGEEI+RR+P+V+VVVGPQ+Y+ LPELL+RA
Sbjct: 64  LGRLRVAKDEAARGGRAMQIAVAGCVAQAEGEEIVRRAPVVDVVVGPQSYHHLPELLKRA 123

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
               R V+T++   DKF  L+       R RG++AF+T+QEGCDKFCTFCVVPYTRG E+
Sbjct: 124 GNEGRAVETEFPAADKFGFLAQPKPDAIRARGISAFVTVQEGCDKFCTFCVVPYTRGAEV 183

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR ++++VD+ ++L DNGV E+TL+GQNVNA+ G G DG+      LL  L+ I G+ RL
Sbjct: 184 SRPVARIVDDVKRLADNGVRELTLIGQNVNAYHGDGPDGKSWPLGRLLEHLAGIPGIARL 243

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           RY+TSHPRD+ D LI AH DL  LMP++HLPVQSGSDRIL +MNR+HTA +YR++IDR R
Sbjct: 244 RYSTSHPRDVDDSLIAAHRDLAALMPFVHLPVQSGSDRILAAMNRKHTADDYRRVIDRFR 303

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           + R DIA SSDFIVGFPGE++ DF AT+ LV +IGYA A+SFKYS R GTP ++M E V 
Sbjct: 304 AARQDIAFSSDFIVGFPGESEQDFLATLALVTQIGYAAAYSFKYSARPGTPAADMQETVS 363

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
                +RL  LQ+ +  QQ +FN A +G  ++VL E+  ++ G++VGR+ +LQ   + + 
Sbjct: 364 PAEMDQRLERLQELIDSQQSAFNKAAIGSTVDVLFERPARKDGQIVGRTAFLQPAHVMAS 423

Query: 444 NHNIGDIIKVRITDVKISTLYGELVV 469
              IG I+ VRI  ++  +  GELV 
Sbjct: 424 PGIIGQILPVRIDSLERYSFLGELVT 449


>gi|34581161|ref|ZP_00142641.1| hypothetical protein [Rickettsia sibirica 246]
 gi|28262546|gb|EAA26050.1| unknown [Rickettsia sibirica 246]
          Length = 445

 Score =  489 bits (1260), Expect = e-136,   Method: Composition-based stats.
 Identities = 237/449 (52%), Positives = 335/449 (74%), Gaps = 7/449 (1%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + ++ ++K+YGCQMNVYDS++M+D+ +  GYE   ++++AD+I+LNTCHIREKAAEK YS
Sbjct: 1   MSKKLYIKTYGCQMNVYDSVKMQDLLYPFGYEPTENIEEADVIILNTCHIREKAAEKTYS 60

Query: 83  FLGRIRNLKNSRIKEG-GDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
            LGRI+ L+++R K+G    ++VVAGCVAQAEGEEI  R+P V++VVGPQ+YY LPEL+ 
Sbjct: 61  ELGRIKKLQDTRTKQGLSSAIIVVAGCVAQAEGEEIFTRTPYVDIVVGPQSYYNLPELIS 120

Query: 142 RA-RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           +  R  K ++D D+  E KF++L          +G +AF+++QEGCDKFCTFCVVPYTRG
Sbjct: 121 KVVRHEKHLIDLDFVEEAKFDQLP----EQLYPQGTSAFISVQEGCDKFCTFCVVPYTRG 176

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E SR++ QV  EA K++ +G  EI LLGQNVNA+ GKG   +  + +DLL  L++I  L
Sbjct: 177 AEFSRNVEQVFREALKVVSSGAKEIMLLGQNVNAYHGKGPADKIFSLADLLKHLAQIPNL 236

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            RLRYTTSHP DM++ LIK +G    LMP+LHLPVQSGS++ILK+MNR+H    Y  II 
Sbjct: 237 ERLRYTTSHPIDMNNDLIKLYGTEPKLMPFLHLPVQSGSNKILKAMNRKHDREYYFDIIH 296

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           R+R  RPDI +SSDFIVGFPGETD+DF  T+DLV ++ Y Q +SFKYSPR GTPG+   +
Sbjct: 297 RLREARPDIVLSSDFIVGFPGETDEDFEGTLDLVRRVKYGQCYSFKYSPRPGTPGATRTD 356

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440
           Q+ E++K+ERL  LQ++L  QQ++FN +CVG  ++VL +++GK   +++G++P++QSV +
Sbjct: 357 QIPEHIKSERLTILQQELMAQQLAFNTSCVGSTMKVLFDRNGKFDDQIIGKTPYMQSVYI 416

Query: 441 NSKN-HNIGDIIKVRITDVKISTLYGELV 468
            + N   +G II V+IT   +++L GE++
Sbjct: 417 QNPNKSLLGKIIDVKITKASLNSLTGEIL 445


>gi|258542174|ref|YP_003187607.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Acetobacter
           pasteurianus IFO 3283-01]
 gi|256633252|dbj|BAH99227.1| tRNA 2-methylthioadenosine synthase MiaB [Acetobacter pasteurianus
           IFO 3283-01]
 gi|256636311|dbj|BAI02280.1| tRNA 2-methylthioadenosine synthase MiaB [Acetobacter pasteurianus
           IFO 3283-03]
 gi|256639364|dbj|BAI05326.1| tRNA 2-methylthioadenosine synthase MiaB [Acetobacter pasteurianus
           IFO 3283-07]
 gi|256642420|dbj|BAI08375.1| tRNA 2-methylthioadenosine synthase MiaB [Acetobacter pasteurianus
           IFO 3283-22]
 gi|256645475|dbj|BAI11423.1| tRNA 2-methylthioadenosine synthase MiaB [Acetobacter pasteurianus
           IFO 3283-26]
 gi|256648528|dbj|BAI14469.1| tRNA 2-methylthioadenosine synthase MiaB [Acetobacter pasteurianus
           IFO 3283-32]
 gi|256651581|dbj|BAI17515.1| tRNA 2-methylthioadenosine synthase MiaB [Acetobacter pasteurianus
           IFO 3283-01-42C]
 gi|256654572|dbj|BAI20499.1| tRNA 2-methylthioadenosine synthase MiaB [Acetobacter pasteurianus
           IFO 3283-12]
          Length = 472

 Score =  489 bits (1260), Expect = e-136,   Method: Composition-based stats.
 Identities = 249/460 (54%), Positives = 321/460 (69%), Gaps = 2/460 (0%)

Query: 9   GVAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLN 68
           G   +++         +   V ++GCQMNVYDS RM D+    GY+ V + D AD+I+LN
Sbjct: 7   GAPAIMTGTPANTSPARGLHVITWGCQMNVYDSARMGDVLRPLGYQPVATPDTADMIILN 66

Query: 69  TCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVV 128
           TCHIR+KAAEKV+S LGR+R +K +R   G   ++ VAGCVAQAEG+EIL R+P V++V+
Sbjct: 67  TCHIRDKAAEKVFSELGRLRKIKEARETSGQHTIIAVAGCVAQAEGQEILARAPYVDIVL 126

Query: 129 GPQTYYRLPEL-LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCD 187
           GPQTY+RLPE+    AR G  V++TD+  E KF+ L   +         TAFLTIQEGCD
Sbjct: 127 GPQTYHRLPEMVARAARAGGAVIETDFPAEQKFDFLPEAEAP-QTAGNYTAFLTIQEGCD 185

Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTF 247
           KFC+FCVVPYTRG E SRS+  V+ EAR+++++GV +I LLGQNVNA+ G+G DG     
Sbjct: 186 KFCSFCVVPYTRGAESSRSVLSVLAEARRMVESGVKDICLLGQNVNAYHGEGPDGSTWDL 245

Query: 248 SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307
             L Y L+++ GL R+RY TSHPRDM+D LI AH DL  LMP+LHLPVQ+GSDRIL++MN
Sbjct: 246 PQLAYELAKLPGLSRIRYMTSHPRDMNDALIAAHRDLPQLMPFLHLPVQAGSDRILRAMN 305

Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           R HTA EYR I+ R+R  RPD+A+SSDFIVG PGETD+DF ATM LV  +G+A A+SFKY
Sbjct: 306 RGHTADEYRDIVRRLREARPDLALSSDFIVGHPGETDEDFEATMQLVRDVGFALAYSFKY 365

Query: 368 SPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK 427
           SPR GTP +    QV E+VK  RL  LQ  LREQQ +FN   VG+ I VL    G++ G+
Sbjct: 366 SPRPGTPAAGAGMQVPEDVKDARLQALQALLREQQDAFNATLVGKTIPVLFTSEGRKPGQ 425

Query: 428 LVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
           + GRSPWLQ V ++   H IG  + VRI +   ++L G L
Sbjct: 426 IAGRSPWLQPVHVSGPKHLIGKELPVRIVERLTNSLSGVL 465


>gi|332160874|ref|YP_004297451.1| putative tRNA-thiotransferase [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325665104|gb|ADZ41748.1| putative tRNA-thiotransferase [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330861444|emb|CBX71668.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Yersinia
           enterocolitica W22703]
          Length = 474

 Score =  489 bits (1260), Expect = e-136,   Method: Composition-based stats.
 Identities = 200/449 (44%), Positives = 284/449 (63%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++  +K++GCQMN YDS +M D+  S  GY+     ++ADL++LNTC IREKA EKV+
Sbjct: 1   MTKKLHIKTWGCQMNEYDSSKMADLLASTHGYQLTEIPEEADLLLLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S LG  + LK         +++ V GCVA  EGE + +R+P V+V+ GPQT +RLPE++ 
Sbjct: 61  SLLGHWKLLKEK----NPGIIIGVGGCVASQEGEHLRQRAPCVDVIFGPQTLHRLPEMIN 116

Query: 142 RAR-FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
             +     VVD  +   +KF+RL        R  G TAF++I EGC+K+CTFCVVPYTRG
Sbjct: 117 HVQGTHSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTFCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR    ++ E  +L   GV E+ LLGQNVNA+RG   DG+ C+F+DLL  ++ I G+
Sbjct: 172 EEVSRPSDDILFEIAQLAAQGVREVNLLGQNVNAYRGATYDGDICSFADLLRLVAAIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+TTSHP + +D +I  + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II 
Sbjct: 232 DRVRFTTSHPIEFTDDIIDVYRDTPELVSFLHLPVQSGSDRILTMMKRAHTALEYKAIIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R  RPDI ISSDFI+GFPGET  DF  TM LV  + +  ++SF YSPR GTP +++ +
Sbjct: 292 KLRQARPDIQISSDFIIGFPGETQQDFEQTMKLVADVRFDTSYSFIYSPRPGTPAADLPD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439
            V E  K +RL  LQ+++ +Q +  +   VG +  +L+E   ++   +L GR+   + V 
Sbjct: 352 DVSEEEKKQRLHILQQRITQQAMEISREMVGTVQRILVEGTSRKNVMELAGRTENNRVVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG  + V I DV  S+L G L+
Sbjct: 412 FEGTPEMIGKFVDVEIVDVYASSLRGILL 440


>gi|329113346|ref|ZP_08242127.1| (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
           [Acetobacter pomorum DM001]
 gi|326697171|gb|EGE48831.1| (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
           [Acetobacter pomorum DM001]
          Length = 472

 Score =  489 bits (1259), Expect = e-136,   Method: Composition-based stats.
 Identities = 247/464 (53%), Positives = 321/464 (69%), Gaps = 2/464 (0%)

Query: 5   IKLIGVAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADL 64
           ++  G   +++         +   V ++GCQMNVYDS RM D+    GY+ V + D AD+
Sbjct: 3   LRHSGAPAIMTGTPANTSPARGLHVITWGCQMNVYDSARMGDVLRPLGYQPVATPDAADM 62

Query: 65  IVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIV 124
           I+LNTCHIR++AAEKV+S LGR+R +K +R   G   ++ VAGCVAQAEG+EIL R+P V
Sbjct: 63  IILNTCHIRDRAAEKVFSELGRLRKIKEARETAGQQTIIAVAGCVAQAEGQEILARAPYV 122

Query: 125 NVVVGPQTYYRLPEL-LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQ 183
           ++V+GPQTY+RLPE+    AR G  V++TD+  E KF+ L   +         TAFLTIQ
Sbjct: 123 DIVLGPQTYHRLPEMVARAARAGGAVIETDFPAEQKFDFLPESEAP-QTAGNYTAFLTIQ 181

Query: 184 EGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
           EGCDKFC+FCVVPYTRG E SR +  V+ EAR+++++GV +I LLGQNVNA+ G+G DG 
Sbjct: 182 EGCDKFCSFCVVPYTRGAESSRPVLSVLAEARRMVESGVKDICLLGQNVNAYHGEGPDGS 241

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
                 L Y L+++ GL R+RY TSHPRDM D LI AH DL  LMP+LHLPVQ+GSDRIL
Sbjct: 242 TWGLPQLAYELAKLPGLSRIRYMTSHPRDMDDALIAAHRDLPELMPFLHLPVQAGSDRIL 301

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           ++MNR HTA EYR I+ R+R  RPD+A+SSDFIVG PGETD+DF ATM LV  +G+A A+
Sbjct: 302 RAMNRGHTADEYRDIVRRLREARPDLALSSDFIVGHPGETDEDFEATMQLVRDVGFALAY 361

Query: 364 SFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK 423
           SFKYSPR GTP +    QV E+VK  RL  LQ  LREQQ +FN   VG+ I VL    G+
Sbjct: 362 SFKYSPRPGTPAAGAGMQVPEDVKDARLQALQALLREQQDAFNATLVGKTIPVLFTSEGR 421

Query: 424 EKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
           + G++ GRSPWLQ V ++   H IG  + VRI +   ++L G L
Sbjct: 422 KPGQIAGRSPWLQPVHVSGPKHLIGKELPVRIVERLTNSLSGVL 465


>gi|152979606|ref|YP_001345235.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Actinobacillus
           succinogenes 130Z]
 gi|229890491|sp|A6VQQ3|MIAB_ACTSZ RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|150841329|gb|ABR75300.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Actinobacillus
           succinogenes 130Z]
          Length = 474

 Score =  489 bits (1259), Expect = e-136,   Method: Composition-based stats.
 Identities = 207/449 (46%), Positives = 290/449 (64%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + Q+  +K++GCQMN YDS ++ D+  S  G E     + AD+++LNTC IREKA EKV+
Sbjct: 1   MTQKLHIKTWGCQMNEYDSAKIADLLLSTHGLELTEEAEQADVLLLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S LGR +  KN        L++ V GCVA  EGE I  R+P V+++ GPQT +RLPE++ 
Sbjct: 61  SQLGRWKTWKNE----KPGLIIGVGGCVASQEGEHIRERAPFVDIIFGPQTLHRLPEMIN 116

Query: 142 RARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           + R GK  VVD  +   +KF+ L        +  G TAF++I EGC+K+CT+CVVPYTRG
Sbjct: 117 QIRGGKSSVVDVSFPEIEKFDCLP-----EPKAEGPTAFVSIMEGCNKYCTYCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR L  V+ E  +L D GV EI LLGQNVNA+RG   DG  CTF++LL  ++ I G+
Sbjct: 172 EEVSRPLDDVLFEVAQLADQGVREINLLGQNVNAYRGPTHDGGICTFAELLRLVASIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            RLR+TTSHP + +D +I  + D   L+ +LHLPVQSG+DRIL  M R HTA EY+ II 
Sbjct: 232 DRLRFTTSHPIEFTDDIIDVYADTPELVSFLHLPVQSGADRILTMMKRGHTALEYKSIIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R VRPDI ISSDFIVGFPGET+++F  TM+L+  + +  +FSF YS R GTP ++M +
Sbjct: 292 KLRKVRPDIQISSDFIVGFPGETNEEFEQTMNLIADVNFDMSFSFVYSARPGTPAADMPD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439
            V E  K +RL  LQ+++  Q   F+ A +G    VL+E   K+   +L GR+   + V 
Sbjct: 352 DVSEEEKKQRLYLLQQRINNQAAKFSRAMLGTEQRVLVEGPSKKDIMELTGRTENNRIVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG  + ++ITDV  ++L G+++
Sbjct: 412 FKGTPDMIGKFVDIQITDVFTNSLRGDVI 440


>gi|332306418|ref|YP_004434269.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332173747|gb|AEE23001.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 477

 Score =  489 bits (1259), Expect = e-136,   Method: Composition-based stats.
 Identities = 199/449 (44%), Positives = 296/449 (65%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++ F+K++GCQMN YDS +M D+   + GY+  ++ ++AD+I+LNTC IREKA EKV+
Sbjct: 1   MTKKLFIKTWGCQMNEYDSQKMADLLDTTHGYQVADTAEEADIILLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR +NLK     +  +L++ V GCVA  EG+ I +R+P V++V GPQT +RLPE++ 
Sbjct: 61  HQLGRWKNLKQ----DKPELIIGVGGCVASQEGQVIRQRAPFVDLVFGPQTLHRLPEMIN 116

Query: 142 RARFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           + + G   V+D  +   +KF+RL        R  G TAF++I EGC K+CTFCVVPYTRG
Sbjct: 117 QIKGGSASVIDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCSKYCTFCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR +  V+ E  +L + GV E+ LLGQNVNA+RG   DG  CTF++LL  ++ I G+
Sbjct: 172 EEVSRPVDDVLLEVAQLAEQGVREVNLLGQNVNAFRGPHHDGAICTFAELLEMVASIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+RYTTSHP + +D +I+A+  +  L+ +LHLPVQSGSDR+L  M R HTA EY+  I 
Sbjct: 232 DRIRYTTSHPVEFTDDIIEAYATIPELVDHLHLPVQSGSDRVLNLMKRGHTAIEYKSKIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R +RP++++SSDFI+GFPGE+D DF ATMDL+  + +  +FSF YS R GTP +++ +
Sbjct: 292 KLRKIRPNLSMSSDFIIGFPGESDTDFEATMDLIQAMDFDLSFSFIYSARPGTPAADLPD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439
            V E  K ERL  LQ ++ +Q +      +     +L+E   K+   +L GR+   + V 
Sbjct: 352 DVSEATKKERLQLLQNRITQQALRIARNMIDSEQRILVEGPSKKNPMELSGRTENNRVVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG  + V+ITDV  ++L G+++
Sbjct: 412 FEGTPDMIGGFVDVKITDVFANSLRGDVL 440


>gi|237809456|ref|YP_002893896.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Tolumonas
           auensis DSM 9187]
 gi|237501717|gb|ACQ94310.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Tolumonas auensis DSM
           9187]
          Length = 476

 Score =  489 bits (1259), Expect = e-136,   Method: Composition-based stats.
 Identities = 197/449 (43%), Positives = 286/449 (63%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++  +K++GCQMN YDS +M D+   S GYE     ++ADL+VLNTC IREKA EK++
Sbjct: 1   MSKKLHIKTWGCQMNEYDSAKMVDLLTSSLGYETTELPEEADLLVLNTCSIREKAQEKLF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR + LK    K+  +L++ V GCVA  EG+ I  R+P V+VV GPQT +RLP +++
Sbjct: 61  HQLGRWKELK----KKNPELVIAVGGCVASQEGKAIRSRAPNVDVVFGPQTLHRLPNMIK 116

Query: 142 RARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           + + G    VD  +   +KF+ L        R  G TA+++I EGC K+CT+CVVPYTRG
Sbjct: 117 QVKAGHGAQVDVSFPEIEKFDNLP-----EPRAEGPTAYVSIMEGCSKYCTYCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR    V+ E  +L + GV E+ LLGQNVNA+RG+  DG  C+F+ LL  ++ I G+
Sbjct: 172 EEVSRPQDDVLYEIAQLAEQGVREVNLLGQNVNAYRGETYDGGICSFAQLLRLVAAIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+RYTTSHP + +D +I+ + D   L+ +LHLPVQSGSD+IL  M R HTA EY+  I 
Sbjct: 232 DRIRYTTSHPIEFTDDIIEVYKDTPELVNFLHLPVQSGSDKILSMMKRPHTALEYKSKIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++++VRPDI ISSDFIVGFPGETD+DF  TM L++ I +  ++SF +S R GTP ++M +
Sbjct: 292 KLKAVRPDILISSDFIVGFPGETDEDFAKTMKLIEDIQFDTSYSFVFSARPGTPAADMPD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439
                VK ERL  LQ+ +  Q + ++    G I  +L+E   +    +L GR+   + V 
Sbjct: 352 DTPMEVKKERLAHLQQTINNQAMQYSRQMHGTIQRILVEGPSRHDIMELCGRTENNRVVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG  + V IT+ +  +L G+++
Sbjct: 412 FAGDARLIGRFVDVEITEARPHSLRGKII 440


>gi|50593428|gb|AAT79459.1| putative miaB protein [Agrobacterium luteum]
          Length = 445

 Score =  489 bits (1259), Expect = e-136,   Method: Composition-based stats.
 Identities = 237/443 (53%), Positives = 316/443 (71%), Gaps = 10/443 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++F +KS+GCQMNVYD  RM ++   QG     + ++ADL+VLNTCHIREKA +KVYS +
Sbjct: 7   KKFHIKSFGCQMNVYDGERMSELLVDQGMSAAENDEEADLVVLNTCHIREKAVDKVYSDI 66

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR+R       K+G   ++ VAGCVAQAEG+EI RR+P V++VVGPQ Y+RLPEL+E A+
Sbjct: 67  GRLRR------KDGTSPMIAVAGCVAQAEGKEISRRAPSVDIVVGPQAYHRLPELMETAK 120

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            GK+ +DTD     KF+ L        ++   TAFLT+QEGCDKFCT+CVVPYTRG EIS
Sbjct: 121 SGKKALDTDMPAISKFDILP----SRGKQARPTAFLTVQEGCDKFCTYCVVPYTRGAEIS 176

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R  + +VDEA+ L+D G  EITLLGQNVNAW G+   G       L+ +L +I GL R+R
Sbjct: 177 RPWADLVDEAKALVDGGAREITLLGQNVNAWTGEDEKGNHQGLDGLIRALDKISGLKRIR 236

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           Y TSHP DM++ LI AHGD+  LMP+LHLPVQSGSDRILK+MNR H+   Y  I++++R 
Sbjct: 237 YMTSHPNDMTEGLIAAHGDVGKLMPFLHLPVQSGSDRILKAMNRSHSVQSYLAILEKMRE 296

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           +RPDIA+S DFIVGFPGETD DF  T+ +V    Y+QAFSFKYSPR GTP + M +Q+  
Sbjct: 297 LRPDIALSGDFIVGFPGETDQDFEETLQIVRDANYSQAFSFKYSPRPGTPAAGMDDQIAP 356

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
            V  ERL  LQ  L EQQ +FN   VG+  ++L+E+ GK  G+L+G++PWLQS+ + S +
Sbjct: 357 EVMDERLQRLQALLNEQQYAFNQETVGRTTDILLERRGKLDGQLIGKTPWLQSLHIISPD 416

Query: 445 HNIGDIIKVRITDVKISTLYGEL 467
            +IGD+++V +T    ++L G++
Sbjct: 417 LSIGDLVEVEVTRAGPNSLTGQI 439


>gi|311280443|ref|YP_003942674.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Enterobacter cloacae
           SCF1]
 gi|308749638|gb|ADO49390.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Enterobacter cloacae
           SCF1]
          Length = 474

 Score =  489 bits (1258), Expect = e-136,   Method: Composition-based stats.
 Identities = 196/449 (43%), Positives = 288/449 (64%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++  +K++GCQMN YDS +M D+  +  GY+     ++AD+++LNTC IREKA EKV+
Sbjct: 1   MTKKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTEVAEEADVLLLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR + LK        DL++ V GCVA  EG+ I +R+  V+++ GPQT +RLPE++ 
Sbjct: 61  HQLGRWKLLKEK----NPDLIIGVGGCVASQEGDHIRQRAHYVDIIFGPQTLHRLPEMIN 116

Query: 142 RARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
             R  +  VVD  +   +KF+RL        R  G TAF++I EGC+K+CT+CVVPYTRG
Sbjct: 117 SVRGNRSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTYCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR    ++ E  +L   GV E+ LLGQNVNAWRG+  DG   +F+DLL  ++ I G+
Sbjct: 172 EEVSRPSDDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTTGSFADLLRLVAAIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+TTSHP + +D +I+ + D   L+ +LHLPVQSGSDR+L  M R HTA EY+ II 
Sbjct: 232 DRVRFTTSHPIEFTDDIIEVYRDTPELVSFLHLPVQSGSDRVLNLMGRTHTALEYKAIIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R  RPDI ISSDFIVGFPGET DDF  TM L+  + +  ++SF +S R GTP ++M++
Sbjct: 292 KLREARPDIQISSDFIVGFPGETTDDFERTMKLIADVNFDMSYSFIFSARPGTPAADMVD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439
            V E  K +RL  LQ+++ +Q ++++   +G    +L+E   ++   +L GR+   + V 
Sbjct: 352 DVAEEEKKQRLYILQERINQQAMAWSRRMLGTTQRILVEGTSRKSIMELSGRTENNRVVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG  + V I DV  ++L G+LV
Sbjct: 412 FEGTPDMIGKFVDVEIVDVYPNSLRGKLV 440


>gi|332140833|ref|YP_004426571.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Alteromonas
           macleodii str. 'Deep ecotype']
 gi|229890437|sp|B4S0R8|MIAB_ALTMD RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|327550855|gb|AEA97573.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Alteromonas
           macleodii str. 'Deep ecotype']
          Length = 477

 Score =  489 bits (1258), Expect = e-136,   Method: Composition-based stats.
 Identities = 204/449 (45%), Positives = 293/449 (65%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++ ++K++GCQMN YDS +M D+  S  G+    S ++AD+I+LNTC IREKA EKV+
Sbjct: 1   MTKKLYIKTWGCQMNEYDSEKMADLLDSTHGFSAAQSAEEADVILLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR + LK     +  +L++ V GCVA  EG+ I +R+P V++V GPQT +RLPE++ 
Sbjct: 61  HQLGRWKTLKQ----DKPELIIGVGGCVASQEGDTIRQRAPFVDLVFGPQTLHRLPEMIN 116

Query: 142 RARFG-KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
             + G K V+D  +   +KF+RL        R  G TAF++I EGC K+CTFCVVPYTRG
Sbjct: 117 ELKGGAKSVIDVSFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCSKYCTFCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR +  V+ E  +L   GV E+ LLGQNVNA+RG+  DG  C FS+LL  ++ I G+
Sbjct: 172 EEVSRPVDDVLLEIAQLAGQGVREVNLLGQNVNAYRGENYDGTICRFSELLELVAAIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+RYTTSHP + +D +I A+  +  L+ +LHLPVQSGSDRIL  M R HTA EY+  + 
Sbjct: 232 DRIRYTTSHPVEFTDDIIDAYASIPELVDHLHLPVQSGSDRILNLMKRGHTALEYKSKMR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           +++ +RP+I++SSDFI+GFPGETD DF ATMDL+  + Y  +FSF YS R GTP ++ ++
Sbjct: 292 KLKKIRPNISLSSDFIIGFPGETDADFEATMDLIQAVDYDLSFSFIYSARPGTPAADAVD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439
            V E  K +RL  LQ+++ +Q +      VG    +L+E   K+   +L GR+   + V 
Sbjct: 352 DVTEETKKQRLHLLQQRITQQALRIARHMVGTEQRILVEGPSKKNPMELSGRTENNRVVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG+ + V ITDV  ++L GE+V
Sbjct: 412 FEGTPDMIGEFVDVNITDVFTNSLRGEVV 440


>gi|254295429|ref|YP_003061452.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Hirschia
           baltica ATCC 49814]
 gi|254043960|gb|ACT60755.1| RNA modification enzyme, MiaB family [Hirschia baltica ATCC 49814]
          Length = 455

 Score =  489 bits (1258), Expect = e-136,   Method: Composition-based stats.
 Identities = 244/455 (53%), Positives = 324/455 (71%), Gaps = 10/455 (2%)

Query: 18  VDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA 77
             Q   P++ F+K+YGCQMNVYDS RM+D+    GY   ++ + ADL+VLNTCHIREKA 
Sbjct: 4   TTQIPSPKKLFIKTYGCQMNVYDSDRMKDVLKPLGYAPTDAPEGADLVVLNTCHIREKAT 63

Query: 78  EKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLP 137
           EKV+S LG+++ +K      GG + + VAGCVAQAEG EI+RR P V++V+GPQ+Y++LP
Sbjct: 64  EKVFSELGQLKRMKAD---TGGKMTIAVAGCVAQAEGAEIMRRQPAVDLVLGPQSYHKLP 120

Query: 138 ELLER-ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
           E++ + AR    V++T++ VE+KF+ L I         G++A ++IQEGCDKFCTFCVVP
Sbjct: 121 EMIAKVARQTGDVLETEFDVEEKFDALPIKRD----ADGMSALVSIQEGCDKFCTFCVVP 176

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK--CTFSDLLYSL 254
           YTRG E SR++  +V E R L   GV EITLLGQNVNA+ G   DG +       LL  L
Sbjct: 177 YTRGAEFSRNVDAIVAEVRGLAAQGVKEITLLGQNVNAFHGAAPDGGEGEWGLGQLLRHL 236

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
           ++I GL RLR+TTSHP+DM + LI A+G+LDVLMPY HLPVQ+GS++ILKSMNR HTA  
Sbjct: 237 AKIGGLERLRFTTSHPKDMEEDLITAYGELDVLMPYFHLPVQAGSNKILKSMNRSHTAES 296

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
           Y + + +IR+ RPD+A++SDFIVGFPGETD+DF ATMDLV ++ YA A+SFKYS R GTP
Sbjct: 297 YIETMKQIRAQRPDVALASDFIVGFPGETDEDFEATMDLVREVKYASAYSFKYSRRPGTP 356

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPW 434
           G+ M  QVDE VK ERL  LQ  +REQ   FN+  +G+ + VL   +GK +G+ +G+SP+
Sbjct: 357 GAEMFGQVDEAVKDERLQRLQALIREQTTEFNNNQIGKTLPVLFTHNGKLEGQALGKSPY 416

Query: 435 LQSVVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
           LQSV + +  H IG I+ V I    +S+L G L  
Sbjct: 417 LQSVHVENAQHLIGKIVDVEIVGATLSSLTGVLTT 451


>gi|308186037|ref|YP_003930168.1| UPF0004 protein [Pantoea vagans C9-1]
 gi|308056547|gb|ADO08719.1| UPF0004 protein [Pantoea vagans C9-1]
          Length = 506

 Score =  489 bits (1258), Expect = e-136,   Method: Composition-based stats.
 Identities = 201/452 (44%), Positives = 285/452 (63%), Gaps = 12/452 (2%)

Query: 20  QCIVPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAE 78
              + ++  +K++GCQMN YDS +M D+  S  GY      ++AD+++LNTC IREKA E
Sbjct: 30  ASAMTKKLHIKTWGCQMNEYDSSKMSDLLNSTHGYTLTEVPEEADILLLNTCSIREKAQE 89

Query: 79  KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPE 138
           KV+  LGR R LK        D+++ V GCVA  EG+ I +R+P V++V GPQT +RLPE
Sbjct: 90  KVFHLLGRWRKLKER----NPDVIIGVGGCVASQEGDHIRQRAPCVDIVFGPQTLHRLPE 145

Query: 139 LLERARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197
           ++   R  K  VVD  +   +KF+RL        R  G TAF++I EGC+K+CTFCVVPY
Sbjct: 146 MINTVRGTKSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTFCVVPY 200

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257
           TRG E+SR    ++ E  +L   GV E+ LLGQNVNA+RG   DGE CTF++LL  ++ I
Sbjct: 201 TRGEEVSRPSDDILLEIAQLAAQGVREVNLLGQNVNAYRGATFDGEICTFAELLRLVAAI 260

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
            G+ R+R+TTSHP + +D +I  + D   L+ +LHLPVQSG+DRIL  M R HTA EY+ 
Sbjct: 261 DGIDRIRFTTSHPIEFTDDIIDVYRDTPELVSFLHLPVQSGADRILTLMKRAHTALEYKA 320

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
           II ++R+ RPDI ISSDFI+GFPGET  DF  TM L+  I +  +FSF YS R GTP ++
Sbjct: 321 IIRKLRAARPDIEISSDFIIGFPGETQQDFEQTMKLIADINFDVSFSFIYSARPGTPAAD 380

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQ 436
           + + V E  K +RL  LQ ++ +Q  + +   +G +  +L+E   ++   ++ GR+   +
Sbjct: 381 LPDDVSEEEKKQRLWILQDRINQQAQAISRRMLGTVQRILVEGISRKNVMEVSGRTENNR 440

Query: 437 SVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            V        IG  + V I DV  ++L G+LV
Sbjct: 441 VVNFEGTPEMIGRFVDVEIVDVYTNSLRGKLV 472


>gi|288942386|ref|YP_003444626.1| MiaB family RNA modification enzyme [Allochromatium vinosum DSM
           180]
 gi|288897758|gb|ADC63594.1| RNA modification enzyme, MiaB family [Allochromatium vinosum DSM
           180]
          Length = 441

 Score =  489 bits (1258), Expect = e-136,   Method: Composition-based stats.
 Identities = 199/448 (44%), Positives = 281/448 (62%), Gaps = 12/448 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           +P++ F+++YGCQMN YDS R+      + G E  +  ++AD+++LNTC IREKA EKV+
Sbjct: 1   MPRKLFIQTYGCQMNEYDSARLATALRVAAGLELTDQPEEADVLLLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S LGR +  K +R     DL++ V GCVA  EGE I  R+P V++V GPQT +RLP++L+
Sbjct: 61  SQLGRWKPWKQAR----PDLVIGVGGCVASQEGEAIRTRAPYVDLVFGPQTLHRLPQMLK 116

Query: 142 RARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
                +R  VD  +   +KF+ L        R  G TAF+++ EGC K+CT+CVVPYTRG
Sbjct: 117 DLESSRRPQVDVSFPEIEKFDCLP-----APRAEGPTAFVSVMEGCSKYCTYCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            EISR    V+ E   L + GV EI LLGQNVNA+RG   DG   + + L+  ++ ++G+
Sbjct: 172 EEISRPFDDVIAEVADLAEQGVREINLLGQNVNAYRGLMADGSTASLALLIRYVAAVEGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+TTSHP +  D LI+   ++  L  ++HLPVQSGSDRIL +M R HTA EYR  I 
Sbjct: 232 GRIRFTTSHPVEFGDDLIETFAEVPELASFVHLPVQSGSDRILAAMKRGHTALEYRCKIK 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           R+R  RPDI ISSDFIVGFP ETD DF AT+DL+D++G+  +FSF YS R GTP ++  +
Sbjct: 292 RLREARPDICISSDFIVGFPNETDADFDATIDLIDQVGFDHSFSFVYSRRPGTPAADYPD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVV 439
            V   VK  RL  LQ+++       +   VG +  VL+E    K+  +L GR+   + V 
Sbjct: 352 AVPLEVKKARLERLQQRIDTNAQRISRQMVGTVQRVLVEGPSRKDPAQLAGRTENNRVVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGEL 467
            +     IG  + + IT+   ++L G+L
Sbjct: 412 FDGPAELIGQFVDLTITESLPNSLRGQL 439


>gi|295096597|emb|CBK85687.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Enterobacter cloacae
           subsp. cloacae NCTC 9394]
          Length = 474

 Score =  489 bits (1258), Expect = e-136,   Method: Composition-based stats.
 Identities = 191/449 (42%), Positives = 287/449 (63%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++  +K++GCQMN YDS +M D+   + GY+   +  +AD+++LNTC IREKA EKV+
Sbjct: 1   MTKKLHIKTWGCQMNEYDSSKMADLLDTTHGYQLTENAKEADVLLLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR + LK        DL++ V GCVA  EG+ I +R+P V++V GPQT +RLPE++ 
Sbjct: 61  HVLGRWKLLKRK----NPDLIIGVGGCVASQEGKLIRQRAPYVDIVFGPQTLHRLPEMIN 116

Query: 142 RARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           + R  +  VVD  +   +KF+RL        R  G TAF++I EGC+K+CT+CVVPYTRG
Sbjct: 117 QVRGSRSPVVDVSFPEIEKFDRLP-----EPRADGPTAFVSIMEGCNKYCTYCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR    ++ E  +L   GV E+ LLGQNVNAWRG+  DG   +F++LL  ++ I G+
Sbjct: 172 EEVSRPADDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTTGSFAELLRLVAAIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+TTSHP + +D +I  + D   L+ +LHLP+Q GSDR+L  M R HT  EY+  I 
Sbjct: 232 DRIRFTTSHPMEFTDDIIDVYRDTPELVSFLHLPIQCGSDRVLNLMGRPHTVLEYKSTIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R  RPDI ISSDFIVGFPGET DDF  TM L+ ++ +  ++SF +S R GTP ++M++
Sbjct: 292 KLREARPDIQISSDFIVGFPGETADDFERTMKLIGEVNFDVSYSFIFSARPGTPAADMVD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439
            V E  K +RL  LQ+++ +Q  +++   +G +  +L+E   ++   +L GR+   + V 
Sbjct: 352 DVPEEEKKQRLYILQERINQQANAWSRRMLGTVQRILVEGTSRKSVMELSGRTENNRVVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG  + V I +V  ++L G++V
Sbjct: 412 FEGTPDMIGKFVDVEIVEVLTNSLRGKVV 440


>gi|332285327|ref|YP_004417238.1| hypothetical protein PT7_2074 [Pusillimonas sp. T7-7]
 gi|330429280|gb|AEC20614.1| hypothetical protein PT7_2074 [Pusillimonas sp. T7-7]
          Length = 497

 Score =  489 bits (1258), Expect = e-136,   Method: Composition-based stats.
 Identities = 206/461 (44%), Positives = 295/461 (63%), Gaps = 13/461 (2%)

Query: 13  MVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCH 71
           +  +        ++ F++++GCQMN YDS +M D+    QG E   + ++AD+I+ NTC 
Sbjct: 37  IPEEPEHPPANTRKLFIRTFGCQMNEYDSDKMADVLREDQGVEITQNPEEADIILFNTCS 96

Query: 72  IREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ 131
           +REKA EKV+S LGR+++LK +      +L++ V GCVA  EGE I++R+  V+VV GPQ
Sbjct: 97  VREKAQEKVFSDLGRVQHLKQA----NPNLIIGVGGCVASQEGEAIVKRASYVDVVFGPQ 152

Query: 132 TYYRLPELLERARF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190
           T +RLPEL+ R R  G+  VD  +   +KF+ L        R  G TAF++I EGC K+C
Sbjct: 153 TLHRLPELIARRRESGRSQVDISFPEIEKFDALPPA-----RVDGPTAFVSIMEGCSKYC 207

Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSD 249
           +FCVVPYTRG E+SR    V+ E   L D GV EITLLGQNVNA+RG   +      F+ 
Sbjct: 208 SFCVVPYTRGAEVSRPFDDVLMEVADLADQGVKEITLLGQNVNAYRGPMRESANIADFAM 267

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
           LL  + EI GL R+RYTTSHP++M+  LI+AHG L  L+P+LHLPVQ+GSD IL +M R 
Sbjct: 268 LLEYVHEIPGLERIRYTTSHPKEMTSRLIEAHGALPKLVPFLHLPVQAGSDTILAAMKRG 327

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369
           +T  E++ I+ R+R+ RP + +SSDFIVGFPGET+D+F  TM L+  +G+ Q+FSF YS 
Sbjct: 328 YTTLEFKSIVRRLRAARPGLTLSSDFIVGFPGETEDEFEKTMKLIRDVGFDQSFSFIYSR 387

Query: 370 RLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKL 428
           R GTP +++ +   + +K ERL  LQ  + EQ  + + + +G    +L+EK   ++  +L
Sbjct: 388 RPGTPAADLEDDTPKELKLERLHRLQALINEQADAISQSMLGTTQRILVEKPSRRDPKEL 447

Query: 429 VGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
            GR+   + V    +   IG +I VRIT    +TL GE+V 
Sbjct: 448 SGRTENNRIVNFVGQPRLIGQMIDVRITQTMTNTLKGEIVT 488


>gi|259415579|ref|ZP_05739500.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Silicibacter sp.
           TrichCH4B]
 gi|259348809|gb|EEW60571.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Silicibacter sp.
           TrichCH4B]
          Length = 440

 Score =  489 bits (1258), Expect = e-136,   Method: Composition-based stats.
 Identities = 245/447 (54%), Positives = 320/447 (71%), Gaps = 9/447 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
            P++ ++K+YGCQMNVYDS RM +    QGY    + DDAD+I+LNTCHIREKAAEKVYS
Sbjct: 3   APKKLYIKTYGCQMNVYDSERMAETLGGQGYVETKTPDDADMILLNTCHIREKAAEKVYS 62

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            LGR + LK        DL + VAGCVAQAEGEEI+RR P+V++VVGPQ+Y+RLPE+  +
Sbjct: 63  ELGRFKGLKAE----KPDLKIGVAGCVAQAEGEEIMRRQPLVDLVVGPQSYHRLPEMEAK 118

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           A  G++V+DTD+  EDKFE+L         KRG TAFLT+QEGCDKFC FCVVPYTRG E
Sbjct: 119 AGAGEKVLDTDFPEEDKFEKLKRRP---KAKRGPTAFLTVQEGCDKFCAFCVVPYTRGAE 175

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR   +++ EA  L++ GV EITLLGQNVNA+ G G +G+  T + L++ L +++GL R
Sbjct: 176 VSRPADRILREAEDLVERGVREITLLGQNVNAYHGAGPNGD-MTLAQLIWELDKVEGLER 234

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP DM D LI+AHG    LMPYLHLPVQ+GSD+ILK MNR HTA  Y ++I+RI
Sbjct: 235 IRFTTSHPNDMMDDLIEAHGTCAKLMPYLHLPVQAGSDKILKRMNRSHTAESYIRLIERI 294

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+ RPDI IS DFIVGFP ET++DF+AT+DLV+++ Y  A+SFKYS R GTP +    QV
Sbjct: 295 RAARPDILISGDFIVGFPEETEEDFQATLDLVEEVKYGTAYSFKYSTRPGTPAAERA-QV 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
           D     +RL  LQ  L  QQ    D+ VG+ + VL EK G+  G++VG+S +L +V +  
Sbjct: 354 DPKEADDRLQRLQALLTRQQREVQDSMVGRELGVLFEKKGRFPGQMVGKSDYLHAVHVAD 413

Query: 443 KNHNIGDIIKVRITDVKISTLYGELVV 469
            +  IGD+ +VRI     ++L GEL+ 
Sbjct: 414 CDAEIGDLRRVRIVSSGANSLAGELIA 440


>gi|29653907|ref|NP_819599.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Coxiella burnetii RSA
           493]
 gi|153208814|ref|ZP_01947041.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Coxiella burnetii 'MSU
           Goat Q177']
 gi|161830593|ref|YP_001596498.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Coxiella
           burnetii RSA 331]
 gi|165919097|ref|ZP_02219183.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Coxiella burnetii RSA
           334]
 gi|212212941|ref|YP_002303877.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Coxiella
           burnetii CbuG_Q212]
 gi|212218810|ref|YP_002305597.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Coxiella
           burnetii CbuK_Q154]
 gi|81629338|sp|Q83DX3|MIAB_COXBU RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|229890502|sp|B6J853|MIAB_COXB1 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|229890503|sp|B6J1A4|MIAB_COXB2 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|229890505|sp|A9NC58|MIAB_COXBR RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|29541170|gb|AAO90113.1| tRNA 2-methylthioadenosine synthase [Coxiella burnetii RSA 493]
 gi|120575720|gb|EAX32344.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Coxiella burnetii 'MSU
           Goat Q177']
 gi|161762460|gb|ABX78102.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Coxiella burnetii RSA
           331]
 gi|165917231|gb|EDR35835.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Coxiella burnetii RSA
           334]
 gi|212011351|gb|ACJ18732.1| tRNA 2-methylthioadenosine synthase [Coxiella burnetii CbuG_Q212]
 gi|212013072|gb|ACJ20452.1| tRNA 2-methylthioadenosine synthase [Coxiella burnetii CbuK_Q154]
          Length = 439

 Score =  488 bits (1257), Expect = e-136,   Method: Composition-based stats.
 Identities = 196/446 (43%), Positives = 281/446 (63%), Gaps = 12/446 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ ++K++GCQMN YDS +M D+   S G E       AD+ +LNTC +REKA  KV+S 
Sbjct: 2   KKLYLKTHGCQMNEYDSAKMADVLKFSHGLELTEDPAVADVFLLNTCSVREKAQTKVFSE 61

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR R  K  R      +++ V GCVA  EGE IL+++P V++V GPQT +RLP+LL+  
Sbjct: 62  LGRWRPFKEKR----PHVVIGVGGCVASQEGETILKQAPFVDIVFGPQTLHRLPDLLDSV 117

Query: 144 RFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
              ++ VVD  +   +KF+RL        R  G +AF++I EGC K+CTFCVVPYTRG E
Sbjct: 118 IQKRKSVVDITFPEIEKFDRLP-----QPRAEGPSAFVSIMEGCSKYCTFCVVPYTRGEE 172

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           ISR    V+ E   L + GV EITLLGQNVN +RG   DG+    + L++ L+ +  + R
Sbjct: 173 ISRPFDDVIAEVASLCEQGVREITLLGQNVNDYRGLMHDGQVADLALLIHYLAAMDNIER 232

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP   S+ LI A+ +   L  +LHLPVQSGSDRIL +M R +T  EY+  I ++
Sbjct: 233 IRFTTSHPSAFSENLIDAYAEEPKLANHLHLPVQSGSDRILAAMKRNYTVLEYKSKIRKL 292

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+VRPDI++SSDFI+GFPGETD DF ATM+L+  +G+  +FSF YSPR GTP + + + V
Sbjct: 293 RAVRPDISLSSDFIIGFPGETDADFEATMNLIHDMGFDHSFSFIYSPRPGTPAAQLPDDV 352

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRSPWLQSVVLN 441
              VK ERL  LQ ++  +    + + VG    +L+    K+   +L GR+   + V  N
Sbjct: 353 PMAVKKERLAILQNRINAKAAEISQSMVGTQQRILVTGPSKKYPDQLSGRTENNRVVNFN 412

Query: 442 SKNHNIGDIIKVRITDVKISTLYGEL 467
                IG ++ ++I + +  +L+GE+
Sbjct: 413 GDTPLIGQMVTIKIKEARPYSLWGEI 438


>gi|260597078|ref|YP_003209649.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Cronobacter
           turicensis z3032]
 gi|260216255|emb|CBA29180.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Cronobacter turicensis z3032]
          Length = 474

 Score =  488 bits (1257), Expect = e-136,   Method: Composition-based stats.
 Identities = 191/449 (42%), Positives = 289/449 (64%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++  +K++GCQMN YDS +M D+  +  G+   +  ++AD+++LNTC IREKA EKV+
Sbjct: 1   MTKKLHIKTWGCQMNEYDSSKMADLLETTHGFTLTDVAEEADILLLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR + LK        D+++ V GCVA  EG+ I  R+  V+++ GPQT +RLPE++ 
Sbjct: 61  HQLGRWKTLKEK----NPDVIIGVGGCVASQEGDHIRDRARYVDIIFGPQTLHRLPEMIN 116

Query: 142 RARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           + +  +  VVD  +   +KF+RL        R  G TAF++I EGC+K+CT+CVVPYTRG
Sbjct: 117 QVKGTRSPVVDISFPEIEKFDRLP-----EPRADGPTAFVSIMEGCNKYCTYCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR    +V E  +L   GV E+ LLGQNVNAWRG+  DG   TF+DLL  ++ I G+
Sbjct: 172 EEVSRPGDDIVLEIAQLAAQGVREVNLLGQNVNAWRGENYDGTTGTFADLLRLVAAIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+TTSHP + +D +I+ + D   L+ +LHLPVQSGSDR+L  M R HTA EY+ II 
Sbjct: 232 DRIRFTTSHPIEFTDDIIEVYRDTPELVSFLHLPVQSGSDRVLNMMGRTHTALEYKAIIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R+ RPDI ISSDFIVGFPGET  DF  TM L+  + +  ++SF +S R GTP ++M++
Sbjct: 292 KLRAARPDIQISSDFIVGFPGETQQDFEQTMKLIADVNFDMSYSFIFSARPGTPAADMVD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439
            V E  K +RL  LQ+++ +Q ++++   +G    +L+E   ++   +L GR+   + V 
Sbjct: 352 DVPEEEKKQRLYILQERINQQAMAWSRRMLGTTQRILVEGTSRKSIMELSGRTENNRVVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  +G  + V IT+V  ++L G+++
Sbjct: 412 FEGAPEMVGKFVDVEITEVFPNSLRGKVI 440


>gi|229890666|sp|Q5LLM0|MIAB_SILPO RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
          Length = 439

 Score =  488 bits (1257), Expect = e-136,   Method: Composition-based stats.
 Identities = 243/444 (54%), Positives = 315/444 (70%), Gaps = 9/444 (2%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P++ F+K+YGCQMNVYDS RM +    QGY    S +DAD+I+LNTCHIREKAAEKVYS 
Sbjct: 4   PKKLFIKTYGCQMNVYDSERMAEALGGQGYVETQSAEDADMILLNTCHIREKAAEKVYSE 63

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK +      DL + VAGCVAQAEGEEI+RR P+V++VVGPQ+Y+RLPEL  + 
Sbjct: 64  LGRFKGLKAA----KPDLKIGVAGCVAQAEGEEIMRRQPLVDLVVGPQSYHRLPELEAKT 119

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           R G++ +DTD+  EDKFE+L    G    KRG TAFLT+QEGCDKFC FCVVPYTRG E+
Sbjct: 120 RAGEKALDTDFPEEDKFEKLK---GRPKAKRGPTAFLTVQEGCDKFCAFCVVPYTRGAEV 176

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR   +++ EA +L++ GV EITLLGQNVNA+ G G +G+  T + L++ L +I GL R+
Sbjct: 177 SRPADRILREANELVERGVREITLLGQNVNAYHGAGPNGD-MTLAGLIWELDKIDGLERI 235

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+TTSHP DM+D LI+AHG    LMPYLHLPVQ+GSD+ILK MNR HTA  Y ++I+RIR
Sbjct: 236 RFTTSHPNDMADDLIEAHGTCAKLMPYLHLPVQAGSDKILKRMNRSHTAESYLRLIERIR 295

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           + RPDI +S DFIVGFP ET+ DF+ T+DLV+++ Y  A+SFKYS R GTP +    QVD
Sbjct: 296 AARPDIVMSGDFIVGFPEETEADFQDTLDLVEQVRYGYAYSFKYSTRPGTPAAERA-QVD 354

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
                +RL  LQ  +   Q    D  VG+ + VL EK G++ G++VG+S +L +V +   
Sbjct: 355 PAEADDRLQRLQAVITRHQREIQDGMVGREVSVLFEKPGRQPGQMVGKSEYLHAVHVQDP 414

Query: 444 NHNIGDIIKVRITDVKISTLYGEL 467
               G I +VRI     ++L GEL
Sbjct: 415 GLEAGQIARVRIVASGANSLAGEL 438


>gi|319764320|ref|YP_004128257.1| tRNA-i(6)a37 thiotransferase enzyme miab [Alicycliphilus
           denitrificans BC]
 gi|330826382|ref|YP_004389685.1| MiaB family RNA modification protein [Alicycliphilus denitrificans
           K601]
 gi|317118881|gb|ADV01370.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Alicycliphilus
           denitrificans BC]
 gi|329311754|gb|AEB86169.1| RNA modification enzyme, MiaB family [Alicycliphilus denitrificans
           K601]
          Length = 449

 Score =  488 bits (1257), Expect = e-136,   Method: Composition-based stats.
 Identities = 200/451 (44%), Positives = 291/451 (64%), Gaps = 15/451 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++ F+K++GCQMN YDS +M D+   +Q Y+  ++ ++ADLI+ NTC +REKA EKV+
Sbjct: 1   MSKKVFIKTFGCQMNEYDSAKMADVLGAAQDYQSTDNPEEADLILFNTCSVREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL- 140
           S LGR+++LK         +L+ V GCVA  EGEEI++R+P V+VV GPQT +RLPELL 
Sbjct: 61  SDLGRVKHLKEK------GVLIGVGGCVASQEGEEIIKRAPFVDVVFGPQTLHRLPELLS 114

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
            R +  K  VD  +   +KF+ L        R  G +AF++I EGC K+C++CVVPYTRG
Sbjct: 115 AREKQHKPQVDISFPEIEKFDHLPPA-----RVEGASAFVSIMEGCSKYCSYCVVPYTRG 169

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG-EKCTFSDLLYSLSEIKG 259
            E+SR    V+ E   L D GV E+TLLGQNVNA+ G   D  EK  F+ LL  ++EI G
Sbjct: 170 EEVSRPFEDVLVEVAGLADQGVKEVTLLGQNVNAYLGTMGDTAEKADFALLLEYVAEIPG 229

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           + R+RYTTSHP + +  LI+A+  +  L+ +LHLPVQ GSDRIL +M R +TA EY+  +
Sbjct: 230 IERIRYTTSHPNEFTPRLIEAYARIPKLVSHLHLPVQHGSDRILMAMKRGYTAMEYKSTV 289

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            +++++RP +A+SSDFIVGFPGET++DF+  M L+  + +  +FSF +SPR GTP +N+ 
Sbjct: 290 RKLKAIRPGMAMSSDFIVGFPGETEEDFQKMMKLIHDVRFDNSFSFIFSPRPGTPAANLH 349

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSV 438
           +    +VK  RL  LQ  +    +  +   VG +  +L+E   K   G+L+GR+   + V
Sbjct: 350 DDTPHDVKLRRLQELQAVINRNILEISQERVGTVQRLLVEGVSKRDAGELMGRTECNRVV 409

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
               +   IG +I VRIT+ +  TL GE+  
Sbjct: 410 NFPGRERLIGQMIDVRITEARTYTLRGEVAT 440


>gi|85709129|ref|ZP_01040195.1| 2-methylthioadenine synthetase [Erythrobacter sp. NAP1]
 gi|85690663|gb|EAQ30666.1| 2-methylthioadenine synthetase [Erythrobacter sp. NAP1]
          Length = 455

 Score =  488 bits (1257), Expect = e-136,   Method: Composition-based stats.
 Identities = 242/461 (52%), Positives = 321/461 (69%), Gaps = 10/461 (2%)

Query: 5   IKLIGVAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADL 64
           +K   VA     I+     P+ + VKS+GCQMNVYD  RM ++   +G       +DADL
Sbjct: 1   MKWREVAGKAPPIMKPQTPPKTYRVKSFGCQMNVYDGERMGELLAEKGITPAPEGEDADL 60

Query: 65  IVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIV 124
           +VLNTCHIREKAAEK+YS +GR+   K          ++ VAGCVAQAEGEEI+ R+P V
Sbjct: 61  VVLNTCHIREKAAEKIYSDIGRLTKGKTQEK----APMIAVAGCVAQAEGEEIMARAPAV 116

Query: 125 NVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQE 184
           ++VVGPQ Y+RLP++L++A  G+R  DTD     KF+ L        ++R  TAFLT+QE
Sbjct: 117 SMVVGPQAYHRLPDMLDKAVAGERATDTDMPAIAKFDSLP-----KRKRRSPTAFLTVQE 171

Query: 185 GCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK 244
           GCDKFCT+CVVPYTRG EISR  S ++DEARKLI+ G  EITLLGQNVNAW G+   G  
Sbjct: 172 GCDKFCTYCVVPYTRGAEISRPYSDLIDEARKLIEAGAREITLLGQNVNAWSGEDEKGRS 231

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304
                L+++L+E+ GL R+RYTTSHP DM D LI+AHG  D LMPYLHLPVQSG+DR+LK
Sbjct: 232 VGLGQLIHALAELDGLERIRYTTSHPNDMDDALIEAHGTCDKLMPYLHLPVQSGNDRVLK 291

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
           +MNR HTA  Y ++++R R+VRPDIA+S DFIVGFPGET+ +F  T+ LVD++ Y+QAFS
Sbjct: 292 AMNRSHTAESYLKLLERFRTVRPDIALSGDFIVGFPGETEAEFEDTLKLVDEVRYSQAFS 351

Query: 365 FKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE 424
           FKYSPR GTP + M  Q+ + +  ERL  LQ +L   Q++FN+  VG+   VL+E+ GK 
Sbjct: 352 FKYSPRPGTPAATMDNQIAKELMDERLQRLQARLNRDQLAFNEGLVGKTCTVLVERKGKH 411

Query: 425 KGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYG 465
            G+ +G+SPWL SV     +  IGD+++VR+ +   +++ G
Sbjct: 412 PGQWLGKSPWLTSVWFEG-DAQIGDLVEVRLVEAGPNSIEG 451


>gi|126736946|ref|ZP_01752681.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Roseobacter sp.
           SK209-2-6]
 gi|126721531|gb|EBA18234.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Roseobacter sp.
           SK209-2-6]
          Length = 440

 Score =  488 bits (1257), Expect = e-136,   Method: Composition-based stats.
 Identities = 248/446 (55%), Positives = 321/446 (71%), Gaps = 9/446 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
            P++ F+K+YGCQMNVYDS RM +    +GY    S DDAD+I+LNTCHIREKAAEKVYS
Sbjct: 3   APKKLFIKTYGCQMNVYDSERMAEALGGEGYVETKSADDADMILLNTCHIREKAAEKVYS 62

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            LGR + LK        DL + VAGCVAQAEGEEI+RR P+V++VVGPQ+Y+RLPE+  +
Sbjct: 63  ELGRFKGLKAE----KPDLKIGVAGCVAQAEGEEIMRRQPLVDLVVGPQSYHRLPEMEAK 118

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           AR G++V+DTD+  EDKFE+L         KRG TAFLT+QEGCDKFC FCVVPYTRG E
Sbjct: 119 AREGEKVLDTDFPEEDKFEKLKSRP---KAKRGPTAFLTVQEGCDKFCAFCVVPYTRGAE 175

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR   +++ EA++L++ GV EITLLGQNVNA+ G G +G+  T + L++ L +I GL R
Sbjct: 176 VSRPADRILREAQELVERGVREITLLGQNVNAYHGAGANGD-LTLAQLIWELDKIDGLER 234

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP DM D LI+AHG    LMPYLHLPVQ+GSD+ILK MNR HTA  Y ++I+RI
Sbjct: 235 IRFTTSHPNDMQDDLIEAHGTCAKLMPYLHLPVQAGSDKILKRMNRSHTAESYIRLIERI 294

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+ RPDI IS DFIVGFP ET++DF+ATMDLV+++ Y  A+SFKYS R GTP +    QV
Sbjct: 295 RAARPDILISGDFIVGFPEETEEDFQATMDLVEEVKYGTAYSFKYSTRPGTPAAERA-QV 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
           D     +RL  LQ  L  QQ    ++ VG+ + VL EK G+  G++VG+S +L +V +  
Sbjct: 354 DPAAADDRLQRLQALLGRQQREVQESMVGREVSVLFEKTGRLPGQMVGKSDYLHAVHVAD 413

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
               IG++ KVRI     ++L GEL+
Sbjct: 414 CPREIGELAKVRIVSSGPNSLAGELL 439


>gi|71909139|ref|YP_286726.1| hypothetical protein Daro_3527 [Dechloromonas aromatica RCB]
 gi|123774245|sp|Q47A75|MIAB_DECAR RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|71848760|gb|AAZ48256.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Dechloromonas aromatica
           RCB]
          Length = 445

 Score =  488 bits (1256), Expect = e-136,   Method: Composition-based stats.
 Identities = 204/451 (45%), Positives = 296/451 (65%), Gaps = 13/451 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           +P++ F++++GCQMN YDS +M D+   S+G  + ++ ++AD+I+ NTC +REKA EKV+
Sbjct: 1   MPKKLFIRTFGCQMNEYDSDKMADVLNASEGVIKTDNPEEADIILFNTCSVREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL- 140
             LGR+R+LK    K   +L++ V GCVA  EG+ I+ R+P V+VV GPQT +RLP+L+ 
Sbjct: 61  HDLGRVRHLK----KLNPNLVIGVGGCVASQEGDAIIARAPYVDVVFGPQTLHRLPQLIA 116

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           ER   GK  VD  +   +KF+ +   +      +G +AF++I EGC KFCTFC+VPYTRG
Sbjct: 117 ERKAKGKAAVDVSFPEIEKFDAMPPSEI-----KGASAFVSIMEGCSKFCTFCIVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE-KCTFSDLLYSLSEIKG 259
            E+SR  + V+ E   L  +GV E+TLLGQNVNA+RG     E K   + L+  ++E+ G
Sbjct: 172 GEVSRPFNDVLTEVADLAAHGVGEVTLLGQNVNAYRGDMEGTEEKADLALLIEYIAEVPG 231

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           + R+RYTTSHPR+M+  L   +  +  L+ +LHLPVQ+GSDR+L +M R +T  EY+ II
Sbjct: 232 IERIRYTTSHPREMTQSLFDTYVKVPKLVSHLHLPVQAGSDRVLAAMKRGYTTLEYKSII 291

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            ++R+ RPDI++SSDFIVGFPGETD+DF  TM L+D +G+  +FSF YSPR GTP   + 
Sbjct: 292 RKLRAARPDISLSSDFIVGFPGETDEDFEKTMKLIDDVGFDSSFSFIYSPRPGTPALELD 351

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSV 438
           +    +VK+ RLL LQK++ EQ  + +   VG I  VL+E   K+   +L GR+   + V
Sbjct: 352 DSTPADVKSARLLRLQKRIDEQAQAISQTMVGSIQRVLVEGTSKKDVHELAGRTDNNRIV 411

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
             +     I   + VRIT     TL GE+V+
Sbjct: 412 NFSGNPRLINTFVDVRITSSLSHTLRGEIVI 442


>gi|114766591|ref|ZP_01445547.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Pelagibaca bermudensis
           HTCC2601]
 gi|114541207|gb|EAU44259.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Roseovarius sp. HTCC2601]
          Length = 435

 Score =  488 bits (1256), Expect = e-136,   Method: Composition-based stats.
 Identities = 250/445 (56%), Positives = 320/445 (71%), Gaps = 13/445 (2%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P++ F+K+YGCQMNVYDS RM +    QGY + +S DDAD+I+LNTCHIREKAAEKVYS 
Sbjct: 4   PKKLFIKTYGCQMNVYDSERMAEAMGGQGYVQTDSPDDADMILLNTCHIREKAAEKVYSE 63

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK+ R     DL + VAGCVAQAEGEEI+RR P+V++VVGPQ+Y+RLPEL  +A
Sbjct: 64  LGRYKGLKSER----PDLKIGVAGCVAQAEGEEIMRRQPMVDLVVGPQSYHRLPELEAKA 119

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           R G++ +DTD+  EDKFERL         KRG TAFLT+QEGCDKFC FCVVPYTRG E+
Sbjct: 120 RGGEKALDTDFPEEDKFERLKSRP---KAKRGPTAFLTVQEGCDKFCAFCVVPYTRGAEV 176

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR   +V+ EAR L++ GV E+TLLGQNVNA+ G          + L+  L++I GL R+
Sbjct: 177 SRPADRVLTEARDLVERGVRELTLLGQNVNAYHGHD-----RGLAGLIRELAKIDGLERI 231

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+TTSHP DM D LI AHGD D LMPYLHLPVQ+GSDRILK MNR+HTA +Y ++I+R+R
Sbjct: 232 RFTTSHPNDMDDDLIAAHGDCDKLMPYLHLPVQAGSDRILKRMNRQHTAEQYLRLIERLR 291

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           + RPD+ +S DFIVGFP ET++DFR TM L++ + Y  AFSFKYS R GTP +    QV 
Sbjct: 292 AARPDLHLSGDFIVGFPEETEEDFRDTMALIEAVQYGSAFSFKYSERPGTPAAERP-QVS 350

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
           E  K +RL  LQ  L  QQ +  DA VG+ + VL EK G+  G++VG+S +L +V + ++
Sbjct: 351 EAEKDDRLQRLQALLTRQQRALQDAMVGRDVGVLFEKAGRLPGQMVGKSDYLHAVHVAAE 410

Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468
               GD+  VRI +   ++L G LV
Sbjct: 411 GLQPGDLRPVRIVESGPNSLKGVLV 435


>gi|284009227|emb|CBA76316.1| tRNA-methylthiotransferase MiaB protein [Arsenophonus nasoniae]
          Length = 476

 Score =  488 bits (1256), Expect = e-136,   Method: Composition-based stats.
 Identities = 198/447 (44%), Positives = 295/447 (65%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ ++K++GCQMN YDS +M D+  S  GY+     ++AD+++LNTC IREKA EKV+  
Sbjct: 5   KKLYIKTWGCQMNEYDSSKMADLLNSTHGYQLTEIAEEADILLLNTCSIREKAQEKVFHQ 64

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR +NLK        D+++ V GCVA  EG+ I +R+P V+++ GPQT +RLPE++ + 
Sbjct: 65  LGRWKNLKE----LNPDIIIGVGGCVASQEGDFIRQRAPSVDIIFGPQTLHRLPEMINQV 120

Query: 144 RFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           +  +  +VD  +   +KF+RL        R  G +A+++I EGC+K+C+FCVVPYTRG E
Sbjct: 121 KGTRSPIVDISFPEIEKFDRLP-----EPRAEGPSAYVSIMEGCNKYCSFCVVPYTRGEE 175

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR    V+ E  +L   GV EI LLGQNVNA+RG   DG  C+F++LL  ++ I G+ R
Sbjct: 176 VSRPCDDVLFEIAQLAAQGVREIHLLGQNVNAYRGATFDGGICSFAELLRLVAAIDGVDR 235

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP + SD +I  + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II ++
Sbjct: 236 IRFTTSHPIEFSDDIIAVYEDTPELVSFLHLPVQSGSDRILTMMKRSHTALEYKSIIRKL 295

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R  RP+I ISSDFIVGFPGET+DDF+ TM L+  + +  +FSF YSPR GTP +++ + V
Sbjct: 296 RKARPNILISSDFIVGFPGETEDDFQKTMQLIADVNFDMSFSFIYSPRPGTPAADLPDDV 355

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441
            E+ K +RL  LQ+++ +Q ++++   +G I  +L+E   ++   +L GR+   + V   
Sbjct: 356 SEDEKKQRLYLLQQRINQQAMNYSRTMLGSIQRILVEGPSRKNIMELSGRAENNRVVNFE 415

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
              + IG  + V I DV  ++L G++V
Sbjct: 416 GTQNMIGKFVDVEIVDVYANSLRGKVV 442


>gi|322513853|ref|ZP_08066934.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Actinobacillus ureae ATCC
           25976]
 gi|322120315|gb|EFX92257.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Actinobacillus ureae ATCC
           25976]
          Length = 475

 Score =  488 bits (1256), Expect = e-136,   Method: Composition-based stats.
 Identities = 204/446 (45%), Positives = 296/446 (66%), Gaps = 12/446 (2%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +  + ++GCQMN YDS +M D+  S  G E  N  ++AD+++LNTC IREKA EKV+S L
Sbjct: 3   KLHITTWGCQMNEYDSSKMADLLNSTHGLELTNKPEEADVLLLNTCSIREKAQEKVFSQL 62

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR +N K    K+  +L++ V GCVA  EGE I  R+P V++V GPQT +RLPE++ + R
Sbjct: 63  GRWKNWK----KDKPELIIGVGGCVASQEGEHIRERAPFVDIVFGPQTLHRLPEMINKIR 118

Query: 145 FGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            G R +VD  +   +KF+RL        R  G TAF++I EGC+K+C+FCVVPYTRG E+
Sbjct: 119 GGDRAIVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCSFCVVPYTRGEEV 173

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR +  V+ E  +L + GV E+ LLGQNVNA+RG+  DG  CTF++LL  ++ I G+ R+
Sbjct: 174 SRPVDDVLFEIAQLAEQGVREVNLLGQNVNAYRGETFDGGICTFAELLRLVAAIDGIDRV 233

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           RYTTSHP + +D +I+ + D   L+ +LHLP+QSG+DR+L  M R HTA EY+ II ++R
Sbjct: 234 RYTTSHPIEFTDDIIEVYRDTPELVSFLHLPIQSGADRVLTMMKRNHTALEYKAIIRKLR 293

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
            VRP+I ISSDFIVGFPGET +DF  TM +++++ +  +FSF YS R GTP +++ + + 
Sbjct: 294 EVRPNIQISSDFIVGFPGETAEDFEQTMKVIEQVNFDMSFSFIYSARPGTPAADLPDDIS 353

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNS 442
           E  K ERL  LQ+++  Q + F+ A +G    VL+E   K+   +L GR+   + V    
Sbjct: 354 EEEKKERLARLQQRINHQAMQFSRAMLGTEQRVLVEGPSKKDIMELTGRTENNRIVNFQG 413

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
               IG  + ++ITDV  ++L G++V
Sbjct: 414 IPDMIGKFVDIKITDVYTNSLRGDVV 439


>gi|320016175|gb|ADV99746.1| isopentenyl-adenosine A37 tRNA methylthiolase [Yersinia pestis
           biovar Medievalis str. Harbin 35]
          Length = 474

 Score =  488 bits (1256), Expect = e-135,   Method: Composition-based stats.
 Identities = 201/449 (44%), Positives = 284/449 (63%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++  +K++GCQMN YDS +M D+  S  GY+     ++ADL++LNTC IREKA EKV+
Sbjct: 1   MTKKLHIKTWGCQMNEYDSSKMADLLASTHGYQLTTIPEEADLLLLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S LG+ + LK         L++ V G VA  EGE++ +R+P V+V+ GPQT +RLPE++ 
Sbjct: 61  SLLGQWKLLKEK----NPQLIIGVGGYVASQEGEQLRQRAPCVDVIFGPQTLHRLPEMIN 116

Query: 142 RAR-FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
             +     VVD  +   +KF+RL        R  G TAF++I EGC+K+CTFCVVPYTRG
Sbjct: 117 HVQGTNSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTFCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR    ++ E  +L   GV E+ LLGQNVNA+RG   DG+ C+F++LL  ++ I G+
Sbjct: 172 EEVSRPSDDILFEIAQLAAQGVREVNLLGQNVNAYRGATYDGDICSFAELLRLVAAIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+TTSHP + +D +I  + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II 
Sbjct: 232 DRVRFTTSHPIEFTDDIIDVYRDTPELVSFLHLPVQSGSDRILTMMKRAHTALEYKAIIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R  RPDI ISSDFIVGFPGET  DF  TM LV  I +  ++SF YSPR GTP +++  
Sbjct: 292 KLRQARPDIQISSDFIVGFPGETQQDFEQTMKLVADIHFDTSYSFIYSPRPGTPAADLPN 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439
            V E  K +RL  LQ+++ +Q +  +   VG +  VL+E   ++   +L GR+   + V 
Sbjct: 352 NVSEEEKKQRLHILQQRISQQAMEISRKMVGTVQRVLVEGTSRKNVMELAGRTENNRVVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG  + V I +V  S+L G L+
Sbjct: 412 FEGSPDMIGKFVDVEIVNVYASSLRGILL 440


>gi|296103382|ref|YP_003613528.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
 gi|295057841|gb|ADF62579.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
          Length = 474

 Score =  488 bits (1256), Expect = e-135,   Method: Composition-based stats.
 Identities = 192/449 (42%), Positives = 287/449 (63%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++  +K++GCQMN YDS +M D+   + GY+   +  +AD+++LNTC IREKA EKV+
Sbjct: 1   MTKKLHIKTWGCQMNEYDSSKMADLLDTTHGYQLTENAKEADVLLLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR + LK        DL++ V GCVA  EG+ I +R+P V++V GPQT +RLPE++ 
Sbjct: 61  HVLGRWKLLKRK----NPDLIIGVGGCVASQEGKLIRQRAPYVDIVFGPQTLHRLPEMIN 116

Query: 142 RARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           + R  +  VVD  +   +KF+RL        R  G TAF++I EGC+K+CT+CVVPYTRG
Sbjct: 117 KVRGDRSPVVDVSFPEIEKFDRLP-----EPRADGPTAFVSIMEGCNKYCTYCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR    ++ E  +L   GV E+ LLGQNVNAWRG+  DG   +F++LL  ++ I G+
Sbjct: 172 EEVSRPADDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTTGSFAELLRLVAAIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+TTSHP + +D +I  + D   L+ +LHLP+Q GSDR+L  M R HT  EY+  I 
Sbjct: 232 DRIRFTTSHPMEFTDDIIDVYRDTPELVSFLHLPIQCGSDRVLNLMGRPHTVLEYKSTIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R  RPDI ISSDFIVGFPGET DDF  TM L+ ++ +  ++SF +S R GTP ++M++
Sbjct: 292 KLREARPDIQISSDFIVGFPGETADDFERTMKLIGEVNFDVSYSFIFSARPGTPAADMVD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439
            V E  K +RL  LQ+++ +Q  +++   +G +  +L+E   ++   +L GR+   + V 
Sbjct: 352 DVPEEEKKQRLYILQERINQQANAWSRRMLGTVQRILVEGTSRKSIMELSGRTENNRVVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG  + V I +V  ++L G+LV
Sbjct: 412 FEGTPDMIGKFVDVEIVEVLTNSLRGKLV 440


>gi|238650870|ref|YP_002916725.1| tRNA 2-methylthioadenosine synthase [Rickettsia peacockii str.
           Rustic]
 gi|238624968|gb|ACR47674.1| tRNA 2-methylthioadenosine synthase [Rickettsia peacockii str.
           Rustic]
          Length = 445

 Score =  487 bits (1255), Expect = e-135,   Method: Composition-based stats.
 Identities = 237/449 (52%), Positives = 335/449 (74%), Gaps = 7/449 (1%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + ++ ++K+YGCQMNVYDS++M+D+ +  GYE   ++++AD+I+LNTCHIREKAAEK YS
Sbjct: 1   MSKKLYIKTYGCQMNVYDSVKMQDLLYPFGYEPTENIEEADVIILNTCHIREKAAEKTYS 60

Query: 83  FLGRIRNLKNSRIKEG-GDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
            LGRI+ L+++R K+G    ++VVAGCVAQAEGEEI  R+P V++VVGPQ+YY LPEL+ 
Sbjct: 61  ELGRIKKLQDTRTKQGLSSAIIVVAGCVAQAEGEEIFTRTPYVDIVVGPQSYYNLPELIS 120

Query: 142 RA-RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           +  R  K ++D D+  E KF++L          +G +AF+++QEGCDKFCTFCVVPYTRG
Sbjct: 121 KVVRHEKHLIDLDFVEEAKFDQLP----EQLYPQGTSAFISVQEGCDKFCTFCVVPYTRG 176

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E SR++ QV  EA K++ +G  EI LLGQNVNA+ GKG   +  + +DLL  L++I  L
Sbjct: 177 AEFSRNVEQVYREALKVVSSGAKEIMLLGQNVNAYHGKGPADKIFSLADLLKHLAQIPNL 236

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            RLRYTTSHP DM++ LIK +G    LMP+LHLPVQSGS++ILK+MNR+H    Y  II+
Sbjct: 237 ERLRYTTSHPIDMNNDLIKLYGTEPKLMPFLHLPVQSGSNKILKAMNRKHDREYYFDIIN 296

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           R+R  RPDI +SSDFIVGFPGETD+DF  T+DLV ++ Y Q +SFKYSPR GTPG+   +
Sbjct: 297 RLREARPDIVLSSDFIVGFPGETDEDFEDTLDLVRRVKYGQCYSFKYSPRPGTPGATRTD 356

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440
           Q+ E++K+ERL  LQ++L  QQ++FN +CVG  ++VL +++GK   +++G++P++QSV +
Sbjct: 357 QIPEHIKSERLTILQQELMAQQLAFNTSCVGSTMKVLFDRNGKFDDQIIGKTPYMQSVYI 416

Query: 441 NSKN-HNIGDIIKVRITDVKISTLYGELV 468
            + N   +G II V IT   +++L GE++
Sbjct: 417 QNPNKSLLGKIIDVNITKASLNSLTGEIL 445


>gi|261341274|ref|ZP_05969132.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Enterobacter cancerogenus
           ATCC 35316]
 gi|288316579|gb|EFC55517.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Enterobacter cancerogenus
           ATCC 35316]
          Length = 474

 Score =  487 bits (1255), Expect = e-135,   Method: Composition-based stats.
 Identities = 191/449 (42%), Positives = 286/449 (63%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++  +K++GCQMN YDS +M D+   + GY+   +  +AD+++LNTC IREKA EKV+
Sbjct: 1   MTKKLHIKTWGCQMNEYDSSKMADLLDTTHGYQLTENPKEADVLLLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR + LK        DL++ V GCVA  EG+ I +R+P V++V GPQT +RLPE++ 
Sbjct: 61  HVLGRWKLLKRK----NPDLIIGVGGCVASQEGKLIRQRAPYVDIVFGPQTLHRLPEMIN 116

Query: 142 RARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           + R  +  VVD  +   +KF+RL        R  G TAF++I EGC+K+CT+CVVPYTRG
Sbjct: 117 QVRGNRSPVVDVSFPEIEKFDRLP-----EPRADGPTAFVSIMEGCNKYCTYCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR    ++ E  +L   GV E+ LLGQNVNAWRG+  DG   +F++LL  ++ I G+
Sbjct: 172 EEVSRPADDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTTGSFAELLRLVAAIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+TTSHP + +D +I  + D   L+ +LHLP+Q GSDR+L  M R HT  EY+  I 
Sbjct: 232 DRIRFTTSHPMEFTDDIIDVYRDTPELVSFLHLPIQCGSDRVLNLMGRPHTVLEYKSTIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R  RPDI ISSDFIVGFPGET DDF  TM L+ ++ +  ++SF +S R GTP ++M++
Sbjct: 292 KLREARPDIQISSDFIVGFPGETADDFERTMKLIGEVNFDVSYSFIFSARPGTPAADMVD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439
            V E  K +RL  LQ+++ +Q  +++   +G +  +L+E   ++   +L GR+   + V 
Sbjct: 352 DVPEEEKKQRLYILQERINQQANAWSRRMLGTVQRILVEGTSRKSIMELSGRTENNRVVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG  + V I DV  ++L  ++V
Sbjct: 412 FEGTPDMIGKFVDVEIVDVLTNSLRAKVV 440


>gi|99080026|ref|YP_612180.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Ruegeria sp. TM1040]
 gi|123077818|sp|Q1GK98|MIAB_SILST RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|99036306|gb|ABF62918.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Ruegeria sp. TM1040]
          Length = 440

 Score =  487 bits (1255), Expect = e-135,   Method: Composition-based stats.
 Identities = 247/446 (55%), Positives = 320/446 (71%), Gaps = 9/446 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
            P++ ++K+YGCQMNVYDS RM +    QGY    + DDAD+I+LNTCHIREKAAEKVYS
Sbjct: 3   APKKLYIKTYGCQMNVYDSERMAETLGGQGYVETQTPDDADMILLNTCHIREKAAEKVYS 62

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            LGR + LK        DL + VAGCVAQAEGEEI+RR P+V++VVGPQ+Y+RLPE+  +
Sbjct: 63  ELGRFKGLKAE----KPDLKIGVAGCVAQAEGEEIMRRQPLVDLVVGPQSYHRLPEMEAK 118

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           A  G++V+DTD+  EDKFE+L         KRG TAFLT+QEGCDKFC FCVVPYTRG E
Sbjct: 119 AGTGEKVLDTDFPEEDKFEKLKRRP---KAKRGPTAFLTVQEGCDKFCAFCVVPYTRGAE 175

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR + +V+ EA  L++ GV EITLLGQNVNA+ G G +G+  T + L++ L +I GL R
Sbjct: 176 VSRPVDRVLREAEDLVERGVREITLLGQNVNAYHGAGPNGD-MTLAQLIWELDKIDGLER 234

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP DM D LI+AHG    LMPYLHLPVQ+GSD+ILK MNR HTA  Y ++I+RI
Sbjct: 235 IRFTTSHPNDMMDDLIEAHGTCKKLMPYLHLPVQAGSDKILKRMNRSHTAESYIRLIERI 294

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+ RPDI IS DFIVGFP ET++DF+AT+DLV+++ Y  A+SFKYS R GTP +    QV
Sbjct: 295 RAARPDILISGDFIVGFPEETEEDFQATLDLVEEVKYGTAYSFKYSTRPGTPAAERA-QV 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
           D     +RL  LQ  L  QQ    D+ VG+ + VL EK G+  G++VG+S +L +V +  
Sbjct: 354 DPKEADDRLQRLQAVLTRQQREVQDSMVGRELGVLFEKAGRFAGQMVGKSDYLHAVHVAD 413

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
            +  IGD+ +VRI     ++L GEL+
Sbjct: 414 CDAKIGDLRRVRIVSSGANSLAGELI 439


>gi|162147627|ref|YP_001602088.1| (dimethylallyl)adenosine tRNA methylthiotransferase
           [Gluconacetobacter diazotrophicus PAl 5]
 gi|229890548|sp|A9HIM2|MIAB_GLUDA RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|161786204|emb|CAP55786.1| conserved hypothetical protein [Gluconacetobacter diazotrophicus
           PAl 5]
          Length = 480

 Score =  487 bits (1255), Expect = e-135,   Method: Composition-based stats.
 Identities = 253/474 (53%), Positives = 325/474 (68%), Gaps = 13/474 (2%)

Query: 7   LIGVAHMVSQIVDQCIVP-----------QRFFVKSYGCQMNVYDSLRMEDMFFSQGYER 55
           +   A  VS + DQ   P           +   V ++GCQMNVYDS RM D+    GY  
Sbjct: 2   VRRRAQEVSAVTDQPACPPAMDLAPASGSRGLHVITWGCQMNVYDSARMTDVLRPLGYHP 61

Query: 56  VNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGE 115
           V++ D AD+++LNTCHIR++AAEKV+S LGR+R +K +R  EG   ++ VAGCVAQAEG+
Sbjct: 62  VDTPDTADMVILNTCHIRDRAAEKVFSELGRLRLVKEARATEGQQTVLAVAGCVAQAEGK 121

Query: 116 EILRRSPIVNVVVGPQTYYRLPELL-ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKR 174
           EIL R+P V++V+GPQTY+RLPE++   AR    V+DTD+  E KF+ L       +   
Sbjct: 122 EILARAPFVDIVLGPQTYHRLPEMVARAARAAGAVIDTDFPAEQKFDFLPDAQAPQS-PG 180

Query: 175 GVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA 234
           G+T+FLTIQEGCDKFC+FCVVPYTRG E SR ++ V+ EAR++++ G  EITLLGQNVNA
Sbjct: 181 GITSFLTIQEGCDKFCSFCVVPYTRGAEASRPVASVLREARRMVECGAREITLLGQNVNA 240

Query: 235 WRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP 294
           + G+G DG     + L  +L+ I GL R+RYTTSHPRDM   LI AH DL  LMP+LHLP
Sbjct: 241 YHGEGPDGRVWGLARLAEALAAIPGLARIRYTTSHPRDMDADLIAAHRDLPALMPFLHLP 300

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           VQSGSDRIL +MNR HTA +YR ++ R+R  RPDIA+SSDFIVG PGETD DF AT+ L+
Sbjct: 301 VQSGSDRILDAMNRGHTAADYRDLVLRLRDARPDIALSSDFIVGHPGETDADFEATLQLI 360

Query: 355 DKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQII 414
             +G+AQAFSFKYSPR GTP +    QV E+VK  RL  LQ  LR QQ +FND  VG ++
Sbjct: 361 RDVGFAQAFSFKYSPRPGTPAAGAPLQVAEDVKDARLQALQALLRTQQDAFNDGTVGHVV 420

Query: 415 EVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            VL   HG++ G+L GRSP+LQ V +   +  IG I  V I +   ++L G LV
Sbjct: 421 PVLFTGHGRKAGQLSGRSPYLQPVHVEGPDSLIGQIANVEIRERYTNSLSGTLV 474


>gi|15893169|ref|NP_360883.1| hypothetical protein RC1246 [Rickettsia conorii str. Malish 7]
 gi|81527850|sp|Q92G77|MIAB_RICCN RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|15620380|gb|AAL03784.1| unknown [Rickettsia conorii str. Malish 7]
          Length = 445

 Score =  487 bits (1254), Expect = e-135,   Method: Composition-based stats.
 Identities = 236/449 (52%), Positives = 335/449 (74%), Gaps = 7/449 (1%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + ++ ++K+YGCQMNVYDS++M+D+ +  GYE   ++++AD+I+LNTCHIREKAAEK YS
Sbjct: 1   MSKKLYIKTYGCQMNVYDSVKMQDLLYPFGYEPTENIEEADVIILNTCHIREKAAEKTYS 60

Query: 83  FLGRIRNLKNSRIKEG-GDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
            LGRI+ L+++R K+G    ++VVAGCVAQAEGEEI  R+P V++VVGPQ+YY LPEL+ 
Sbjct: 61  ELGRIKKLQDTRTKQGLSSAIIVVAGCVAQAEGEEIFTRTPYVDIVVGPQSYYNLPELIS 120

Query: 142 RA-RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           +  R  K ++D D+  E KF++L          +G +AF+++QEGCDKFCTFCVVPYTRG
Sbjct: 121 KVVRHEKHLIDLDFVEEAKFDQLP----EQLYPQGTSAFISVQEGCDKFCTFCVVPYTRG 176

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E SR++ QV  EA K++ +G  EI LLGQNVNA+ GKG   +  + +DLL  L++I  L
Sbjct: 177 AEFSRNVEQVYREALKVVSSGAKEIMLLGQNVNAYHGKGPADKIFSLADLLKHLAQIPNL 236

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            RLRYTTSHP DM++ LIK +G    LMP+LHLPVQSGS++ILK+MNR+H    Y  II+
Sbjct: 237 ERLRYTTSHPIDMNNDLIKLYGTEPKLMPFLHLPVQSGSNKILKAMNRKHDREYYFDIIN 296

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           R+R  RPDI +SSDFIVGFPGETD+DF  T+DLV ++ Y Q +SFKYSPR GTPG+   +
Sbjct: 297 RLREARPDIVLSSDFIVGFPGETDEDFEDTLDLVRRVKYGQCYSFKYSPRPGTPGATRTD 356

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440
           Q+ E++K+ERL  LQ++L  QQ++FN +CVG  ++VL +++GK   +++G++P++QSV +
Sbjct: 357 QIPEHIKSERLTILQQELMAQQLAFNTSCVGSTMKVLFDRNGKFDDQIIGKTPYMQSVYI 416

Query: 441 NSKN-HNIGDIIKVRITDVKISTLYGELV 468
            + N   +G I  V+IT   +++L GE++
Sbjct: 417 QNPNKSLLGKISDVKITKASLNSLTGEIL 445


>gi|270263724|ref|ZP_06191993.1| hypothetical protein SOD_e03490 [Serratia odorifera 4Rx13]
 gi|270042608|gb|EFA15703.1| hypothetical protein SOD_e03490 [Serratia odorifera 4Rx13]
          Length = 497

 Score =  487 bits (1254), Expect = e-135,   Method: Composition-based stats.
 Identities = 203/457 (44%), Positives = 293/457 (64%), Gaps = 12/457 (2%)

Query: 15  SQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIR 73
           S + +   + ++  +K++GCQMN YDS +M D+  S  G+E  ++ ++AD+++LNTC IR
Sbjct: 16  SALSNGKSMTKKLHIKTWGCQMNEYDSSKMADLLGSTHGFEWTDNAEEADVLLLNTCSIR 75

Query: 74  EKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTY 133
           EKA EKV++ LGR + LK         L++ V GCVA  EGE I  R+P V+VV GPQT 
Sbjct: 76  EKAQEKVFAMLGRWKLLKEK----NPALIIGVGGCVASQEGEHIRSRAPCVDVVFGPQTL 131

Query: 134 YRLPELLERARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTF 192
           +RLPE++   R  +  +VD  +   +KF+RL        R  G TAF++I EGC+K+CTF
Sbjct: 132 HRLPEMINHVRGTRSPIVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTF 186

Query: 193 CVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLY 252
           CVVPYTRG E+SR    V+ E  +L   GV E+ LLGQNVNA+RG   DG  C+F++LL 
Sbjct: 187 CVVPYTRGEEVSRPSDDVLFEIAQLAAQGVREVNLLGQNVNAYRGATYDGGICSFAELLR 246

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
            ++ I G+ R+R+TTSHP + +D +I  + D   L+ +LHLPVQSGSDRIL  M R HTA
Sbjct: 247 LVAAIDGIDRIRFTTSHPIEFTDDIIAVYQDTPELVSFLHLPVQSGSDRILTMMKRAHTA 306

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
            EY+ II ++R  RP+I +SSDFI+GFPGET  DF  TM+LV +I +  +FSF YS R G
Sbjct: 307 LEYKAIIRKLRKARPNIQLSSDFIIGFPGETQADFEQTMNLVAEINFDASFSFIYSSRPG 366

Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGR 431
           TP ++M++ V E+ K +RL  LQ ++ +Q + F+   +G +  +L+E   ++   +L GR
Sbjct: 367 TPAADMVDDVSEDEKKQRLYILQDRINQQVLQFSRRMLGTVQRILVEGTSRKSLMELAGR 426

Query: 432 SPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           +   + V        IG  + V IT+V  +TL G +V
Sbjct: 427 TECNRMVNFEGTPDMIGQFVDVEITEVMTNTLRGAVV 463


>gi|319778544|ref|YP_004129457.1| tRNA-i(6)A37 methylthiotransferase [Taylorella equigenitalis MCE9]
 gi|317108568|gb|ADU91314.1| tRNA-i(6)A37 methylthiotransferase [Taylorella equigenitalis MCE9]
          Length = 469

 Score =  487 bits (1254), Expect = e-135,   Method: Composition-based stats.
 Identities = 208/466 (44%), Positives = 299/466 (64%), Gaps = 18/466 (3%)

Query: 12  HMVSQIVDQCIV-----PQRFFVKSYGCQMNVYDSLRMEDMFFSQ-GYERVNSMDDADLI 65
              SQ +D+  +      ++ ++K++GCQMN YDS +M D+  ++ G E  ++ +DAD+I
Sbjct: 13  QSASQFIDEKPIHFPAGAKKLYIKTFGCQMNEYDSEKMADVLHAEKGLELTDNPEDADVI 72

Query: 66  VLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVN 125
           +LNTC IREKA EKV+S LGRI    N   K+  +LL+ V GCVA  EG  IL+R+P V+
Sbjct: 73  LLNTCSIREKAQEKVFSDLGRI----NLLKKKKPELLIGVGGCVASQEGATILQRAPYVD 128

Query: 126 VVVGPQTYYRLPELLERARF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQE 184
           ++ GPQT +RLPEL+E+    G+  VD  +   +KF+ L        R  G TAF++I E
Sbjct: 129 IIFGPQTLHRLPELIEQKESSGRAQVDVSFPEIEKFDHLPPA-----RINGPTAFVSIME 183

Query: 185 GCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-GLDGE 243
           GC K+C++CVVPYTRG EISR L  V+ E   L D GV EI LLGQNVNA+RG  G DGE
Sbjct: 184 GCSKYCSYCVVPYTRGEEISRPLEDVLIEVADLADQGVKEINLLGQNVNAYRGTVGEDGE 243

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
              F+ LL  + +I G+ R+RY TSHP++M+  LI+AH  L  L+P+LHLPVQ+GSDR+L
Sbjct: 244 IADFAMLLELIHDIPGVERIRYITSHPKEMTKRLIEAHAKLPKLVPFLHLPVQAGSDRVL 303

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
            +M R +T+ EY+ ++  +   RP + +SSDFIVGFPGET+DDF AT+ L+  +    +F
Sbjct: 304 AAMKRGYTSLEYKSVVRSLYKARPGLTLSSDFIVGFPGETEDDFEATLKLIKDLNIDTSF 363

Query: 364 SFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK 423
           SF YS R GTP +++ +     VK +RL  LQ  + +Q   F++  +G    +L+E   K
Sbjct: 364 SFIYSRRPGTPAADLPDDTPYEVKLDRLQRLQALVNKQAKEFSEKMLGTEQIILVEGFSK 423

Query: 424 -EKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            +  +L+GR+   + V      + IG ++ VRIT+V  ++L GELV
Sbjct: 424 RDSNELMGRTENNRIVNFKGSENLIGQMVPVRITEVYTNSLRGELV 469


>gi|90581601|ref|ZP_01237392.1| putative 2-methylthioadenine synthetase [Vibrio angustum S14]
 gi|90437184|gb|EAS62384.1| putative 2-methylthioadenine synthetase [Vibrio angustum S14]
          Length = 475

 Score =  487 bits (1254), Expect = e-135,   Method: Composition-based stats.
 Identities = 202/449 (44%), Positives = 290/449 (64%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++  +K++GCQMN YDS +M D+   + G+E     ++AD+++LNTC IREKA EKV+
Sbjct: 1   MAKKLLIKTWGCQMNEYDSSKMADLLNAANGFELTEIPEEADVVLLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR + LK++      DL++ V GCVA  EG+ I +R+P V+V+ GPQT +RLPE+++
Sbjct: 61  HQLGRWKKLKDN----KPDLVIGVGGCVATQEGDSIRKRAPYVDVIFGPQTLHRLPEMIK 116

Query: 142 RARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           R++  ++ V+D  +   +KF+ L        R  G TAF++I EGC K+CT+CVVPYTRG
Sbjct: 117 RSQSNEKTVMDISFPEVEKFDSLP-----EPRAEGATAFVSIMEGCSKYCTYCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR L  V+ E  +L + GV E+ LLGQNVNA+RG   DGE  +F++LL  ++ I G+
Sbjct: 172 EEVSRPLDDVLFEIAQLAEQGVREVNLLGQNVNAYRGPMHDGEVASFAELLRLVAAIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+RYTTSHP + +D +I  + D   L+ YLHLPVQSGSDRIL  M R HTA EY+  I 
Sbjct: 232 DRIRYTTSHPIEFTDDIIDVYKDTPELVNYLHLPVQSGSDRILTMMKRPHTAIEYKSKIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R VRPDI +SSDFIV FPGETD DF  TM L+ +I +  ++SF +SPR GTP ++   
Sbjct: 292 KLRKVRPDITMSSDFIVAFPGETDQDFEDTMKLIREIDFDISYSFIFSPRPGTPAADYPC 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439
            + E VK ERL  LQ++L  Q +      +G    +L+E   ++   +L GR+   + V 
Sbjct: 352 DLSEEVKKERLYALQQQLNSQAMRHARQMLGTEQRILVEGPSRKNVMELRGRTENNRIVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG  + V+I DV  ++L GELV
Sbjct: 412 FEGSADLIGQFVDVKIVDVFTNSLRGELV 440


>gi|238755076|ref|ZP_04616424.1| hypothetical protein yruck0001_21560 [Yersinia ruckeri ATCC 29473]
 gi|238706780|gb|EEP99149.1| hypothetical protein yruck0001_21560 [Yersinia ruckeri ATCC 29473]
          Length = 474

 Score =  487 bits (1254), Expect = e-135,   Method: Composition-based stats.
 Identities = 200/449 (44%), Positives = 289/449 (64%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++  +K++GCQMN YDS +M D+  S  GYE  +  ++ADL++LNTC IREKA EKV+
Sbjct: 1   MTKKLHIKTWGCQMNEYDSSKMADLLASTHGYELTDVPEEADLLLLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           + LGR + LK         L++ V GCVA  EG+ I +R+P V+V+ GPQT +RLPE+L 
Sbjct: 61  ALLGRWKQLKA----TNPQLVIGVGGCVASQEGDHIRQRAPCVDVIFGPQTLHRLPEMLN 116

Query: 142 RAR-FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
                   +VD  +   +KF+RL        R  G TAF++I EGC+K+CTFCVVPYTRG
Sbjct: 117 HVLGTHSPIVDISFPEIEKFDRLP-----EPRADGPTAFVSIMEGCNKYCTFCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR +  V+ E  +L   GV E+ LLGQNVNA+RG   DG+ C F++LL  ++ I G+
Sbjct: 172 EEVSRPVDDVLFEIAQLAAQGVREVNLLGQNVNAYRGATYDGDICRFAELLRLVAAIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+TTSHP + +D +I  + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II 
Sbjct: 232 DRIRFTTSHPIEFTDDIIAVYEDTPELVSFLHLPVQSGSDRILTMMKRAHTALEYKSIIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R  RP+I ISSDFIVGFPGE+  DF  TM LV ++ +  ++SF YS R GTP +++ +
Sbjct: 292 KLRKARPNIHISSDFIVGFPGESQADFEQTMTLVAEVNFDMSYSFIYSSRPGTPAADLPD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439
            V ++ K +RL  LQ+++ +Q ++++ A VG +  VL+E   ++   +L GR+   + V 
Sbjct: 352 DVSDDEKKQRLHALQERITQQAMNYSRAMVGTVQRVLVEGTSRKDVMELAGRTENNRIVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG  + V I DV  ++L G +V
Sbjct: 412 FVGTPEMIGTFVDVNIVDVYTNSLRGVVV 440


>gi|292487621|ref|YP_003530493.1| hypothetical protein EAMY_1135 [Erwinia amylovora CFBP1430]
 gi|291553040|emb|CBA20085.1| UPF0004 protein PA3980 [Erwinia amylovora CFBP1430]
          Length = 480

 Score =  487 bits (1254), Expect = e-135,   Method: Composition-based stats.
 Identities = 198/455 (43%), Positives = 292/455 (64%), Gaps = 12/455 (2%)

Query: 17  IVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREK 75
           + +   + ++  +K++GCQMN YDS +M D+  S  GY      +DAD+++LNTC IREK
Sbjct: 1   MTNGKSMTKKLHIKTWGCQMNEYDSSKMADLLNSTHGYTLTEQAEDADVLLLNTCSIREK 60

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135
           A EKV+  LGR + LK +      +L++ V GCVA  EG +I +R+  V++V GPQT +R
Sbjct: 61  AQEKVFGLLGRWKKLKEA----NPNLIIGVGGCVASQEGAKIRQRASCVDIVFGPQTLHR 116

Query: 136 LPELLERARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCV 194
           LPE++   R  K  VVD  +   +KF+R+        R  G TAF++I EGC+K+CTFCV
Sbjct: 117 LPEMINSVRGSKSPVVDVSFPEIEKFDRMP-----EPRADGPTAFVSIMEGCNKYCTFCV 171

Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL 254
           VPYTRG E+SR    ++ E  +L   GV E+ LLGQNVNA+RG   DG  C+F++LL  +
Sbjct: 172 VPYTRGEEVSRPADDILFEVAQLAAQGVREVNLLGQNVNAYRGATYDGGICSFAELLRLV 231

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
           + I G+ R+R+TTSHP + +D +I+ + D   L+ YLHLPVQSG+DRIL  M R HTA E
Sbjct: 232 AAIDGIDRIRFTTSHPIEFTDDIIEVYRDTPELVSYLHLPVQSGADRILTLMKRAHTALE 291

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
           Y+ II ++ + RPDI ISSDFI+GFPGET  DF  TM LV +I +  ++SF YS R GTP
Sbjct: 292 YKAIIRKLLAARPDIQISSDFIIGFPGETQADFEQTMKLVGEINFDTSYSFIYSARPGTP 351

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSP 433
            + + + V E+ K +RL  LQ ++ +Q ++++   +G +  +L+E   ++   +L GR+ 
Sbjct: 352 AAELPDDVSEDEKKQRLYVLQDRISQQAMAWSRRKLGTVQRILVEGTSRKNVMELSGRTE 411

Query: 434 WLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
             + V   +   +IG  + V+ITDV  ++L G L+
Sbjct: 412 CNRVVNFEATPDHIGKFVDVKITDVYANSLRGVLL 446


>gi|77465601|ref|YP_355104.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Rhodobacter sphaeroides
           2.4.1]
 gi|123757716|sp|Q3IW81|MIAB_RHOS4 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|77390019|gb|ABA81203.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Rhodobacter sphaeroides
           2.4.1]
          Length = 436

 Score =  487 bits (1253), Expect = e-135,   Method: Composition-based stats.
 Identities = 245/442 (55%), Positives = 313/442 (70%), Gaps = 14/442 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F+K+YGCQMNVYDS RM +   ++GY      ++AD+++LNTCHIREKAAEKVYS L
Sbjct: 5   RKLFIKTYGCQMNVYDSERMAEALGAKGYVLTEVAEEADMVLLNTCHIREKAAEKVYSDL 64

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR+R LK +      DL + VAGCVAQAEGEEIL+R P+V++VVGPQ+Y+RLP++LER  
Sbjct: 65  GRLRPLKTA----KPDLKIGVAGCVAQAEGEEILKRMPLVDLVVGPQSYHRLPDMLERTE 120

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G RVVDTD+  EDKF+ L          RG  AFLT+QEGCDKFC FCVVPYTRG E+S
Sbjct: 121 GGARVVDTDFPEEDKFDHLP----ERKATRGPAAFLTVQEGCDKFCAFCVVPYTRGAEVS 176

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R  ++++ EAR L++ GV EITLLGQNVNAW   G          L+  L+ I GL RLR
Sbjct: 177 RPFARLMAEARGLVERGVREITLLGQNVNAWSNDG-----RGLGGLIRELARIDGLERLR 231

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           YTTSHP DM+D LI+AHG    LMPYLHLPVQSGSDRILK+MNR+HTA  Y ++I+RIR+
Sbjct: 232 YTTSHPNDMADDLIEAHGAEPKLMPYLHLPVQSGSDRILKAMNRKHTAEHYLRLIERIRA 291

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
            RPDI ++SDFIVGFPGET+ DF AT+DL+  +G+  AFSFKYS R GTP +   E +  
Sbjct: 292 ARPDILLTSDFIVGFPGETEADFEATLDLIRAVGFGSAFSFKYSARPGTPAAEKPE-LPA 350

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
            V   RL  LQ  + EQQ +   A VG+ + VL EK G+  G++VG+S  L +V +  K 
Sbjct: 351 EVCDARLQRLQALVTEQQRAAQMAMVGREVGVLYEKAGRLPGQMVGKSDHLHAVHVEDKA 410

Query: 445 HNIGDIIKVRITDVKISTLYGE 466
             +GD+++VRIT    ++L GE
Sbjct: 411 GQVGDLVRVRITASAPNSLAGE 432


>gi|122879210|ref|YP_201405.6| (dimethylallyl)adenosine tRNA methylthiotransferase [Xanthomonas
           oryzae pv. oryzae KACC10331]
 gi|229891224|sp|Q5GZ51|MIAB_XANOR RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
          Length = 484

 Score =  487 bits (1253), Expect = e-135,   Method: Composition-based stats.
 Identities = 201/462 (43%), Positives = 293/462 (63%), Gaps = 17/462 (3%)

Query: 14  VSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHI 72
           V++     +V  + ++K++GCQMN YDS +M D+  + +G E  ++ ++AD++++NTC I
Sbjct: 25  VARPSAPAVVRGKLYIKTHGCQMNEYDSAKMADVLAASEGLELTDNPEEADVVLVNTCSI 84

Query: 73  REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT 132
           REKA EKV+S LGR + LK      G  +++ V GCVA  EGE I++R+P V++V GPQT
Sbjct: 85  REKAQEKVFSQLGRWKALKAG----GKPVIIGVGGCVASQEGEAIVKRAPYVDLVFGPQT 140

Query: 133 YYRLPELL-ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCT 191
            +RLPEL+  R   GK  VD  +   +KF+RL        R  G +AF++I EGC K+C+
Sbjct: 141 LHRLPELIRARRESGKSQVDISFPEIEKFDRLP-----EPRAEGPSAFVSIMEGCSKYCS 195

Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-----GLDGEKCT 246
           FCVVPYTRG E+SR    V+ E  +L   GV EI LLGQNVNA+RG      G   +   
Sbjct: 196 FCVVPYTRGEEVSRPFEDVLVEVAQLAAQGVREINLLGQNVNAYRGAYGADAGDPAQYAD 255

Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306
              L+ ++++I+G+ R+R+TTSHP + SD L+ A+ D+  L  YLHLPVQ+GSDRIL +M
Sbjct: 256 LGLLIRTIAQIEGIGRIRFTTSHPLEFSDSLVDAYRDVPQLANYLHLPVQAGSDRILSAM 315

Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
            R +TA E++  I ++R+VRPDI+ISSDFIVGFPGET+ DF  TM L++ +G+ Q+FSF 
Sbjct: 316 KRGYTALEFKSRIRKLRAVRPDISISSDFIVGFPGETEADFEKTMKLIEDVGFDQSFSFV 375

Query: 367 YSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEK 425
           YS R GTP S++ +   E VK  RL  LQ  +     S + + VG +  VL+E    ++ 
Sbjct: 376 YSRRPGTPASDLQDDTPETVKQARLARLQAHISAHAASISQSMVGSVQRVLVEGPSRRDP 435

Query: 426 GKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
            +L G+S  ++ V        IG  + V IT+   ++L G +
Sbjct: 436 NELTGKSENMRPVNFPGNPRLIGQFVDVLITEAMSNSLRGRI 477


>gi|56708793|ref|YP_164834.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Ruegeria
           pomeroyi DSS-3]
 gi|56680478|gb|AAV97143.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Ruegeria pomeroyi DSS-3]
          Length = 462

 Score =  487 bits (1253), Expect = e-135,   Method: Composition-based stats.
 Identities = 243/444 (54%), Positives = 315/444 (70%), Gaps = 9/444 (2%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P++ F+K+YGCQMNVYDS RM +    QGY    S +DAD+I+LNTCHIREKAAEKVYS 
Sbjct: 27  PKKLFIKTYGCQMNVYDSERMAEALGGQGYVETQSAEDADMILLNTCHIREKAAEKVYSE 86

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK +      DL + VAGCVAQAEGEEI+RR P+V++VVGPQ+Y+RLPEL  + 
Sbjct: 87  LGRFKGLKAA----KPDLKIGVAGCVAQAEGEEIMRRQPLVDLVVGPQSYHRLPELEAKT 142

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           R G++ +DTD+  EDKFE+L    G    KRG TAFLT+QEGCDKFC FCVVPYTRG E+
Sbjct: 143 RAGEKALDTDFPEEDKFEKLK---GRPKAKRGPTAFLTVQEGCDKFCAFCVVPYTRGAEV 199

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR   +++ EA +L++ GV EITLLGQNVNA+ G G +G+  T + L++ L +I GL R+
Sbjct: 200 SRPADRILREANELVERGVREITLLGQNVNAYHGAGPNGD-MTLAGLIWELDKIDGLERI 258

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+TTSHP DM+D LI+AHG    LMPYLHLPVQ+GSD+ILK MNR HTA  Y ++I+RIR
Sbjct: 259 RFTTSHPNDMADDLIEAHGTCAKLMPYLHLPVQAGSDKILKRMNRSHTAESYLRLIERIR 318

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           + RPDI +S DFIVGFP ET+ DF+ T+DLV+++ Y  A+SFKYS R GTP +    QVD
Sbjct: 319 AARPDIVMSGDFIVGFPEETEADFQDTLDLVEQVRYGYAYSFKYSTRPGTPAAERA-QVD 377

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
                +RL  LQ  +   Q    D  VG+ + VL EK G++ G++VG+S +L +V +   
Sbjct: 378 PAEADDRLQRLQAVITRHQREIQDGMVGREVSVLFEKPGRQPGQMVGKSEYLHAVHVQDP 437

Query: 444 NHNIGDIIKVRITDVKISTLYGEL 467
               G I +VRI     ++L GEL
Sbjct: 438 GLEAGQIARVRIVASGANSLAGEL 461


>gi|325914746|ref|ZP_08177084.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Xanthomonas vesicatoria
           ATCC 35937]
 gi|325539023|gb|EGD10681.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Xanthomonas vesicatoria
           ATCC 35937]
          Length = 489

 Score =  487 bits (1253), Expect = e-135,   Method: Composition-based stats.
 Identities = 204/463 (44%), Positives = 299/463 (64%), Gaps = 14/463 (3%)

Query: 14  VSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHI 72
           V++     +V  + ++K++GCQMN YDS +M D+  + +G E  ++ +DAD++++NTC I
Sbjct: 25  VARPQAPAVVRGKLYIKTHGCQMNEYDSAKMADVLAASEGLELTDNPEDADVVLVNTCSI 84

Query: 73  REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVV-VAGCVAQAEGEEILRRSPIVNVVVGPQ 131
           REKA EKV+S LGR R LK SR K GG  +++ V GCVA  EGE I++R+P V++V GPQ
Sbjct: 85  REKAQEKVFSQLGRWRLLKESRAKAGGTPVIIGVGGCVASQEGEAIVKRAPYVDLVFGPQ 144

Query: 132 TYYRLPELL-ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190
           T +RLPEL+  R + GK  VD  +   +KF+RL        R  G +AF++I EGC K+C
Sbjct: 145 TLHRLPELIRARRQSGKSQVDISFPEIEKFDRLP-----EPRADGPSAFVSIMEGCSKYC 199

Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG-KGLDGEKC---- 245
           +FCVVPYTRG E+SR    V+ E  +L   GV EI LLGQNVNA+RG  G D ++     
Sbjct: 200 SFCVVPYTRGEEVSRPFEDVLVEVAQLAAQGVREINLLGQNVNAYRGAYGADADEAAQYA 259

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
               L+ ++++I+G+ R+R+TTSHP + SD L+ A+  +  L  YLHLPVQ+GSDRIL +
Sbjct: 260 DLGLLIRTIAQIEGIGRIRFTTSHPLEFSDSLVDAYRGVPQLANYLHLPVQAGSDRILSA 319

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           M R +TA E++  I ++R+VRPDI+ISSDFIVGFPGET+ DF  TM L++ +G+ Q+FSF
Sbjct: 320 MKRGYTALEFKSKIRKLRAVRPDISISSDFIVGFPGETEADFEKTMKLIEDVGFDQSFSF 379

Query: 366 KYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KE 424
            YS R GTP +++ +   + VK  RL  LQ  +     + + + VG +  VL+E    ++
Sbjct: 380 VYSRRPGTPAADLEDDTPDAVKQARLARLQAHISAHAATISQSMVGSVQRVLVEGPSRRD 439

Query: 425 KGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
             +L G+S  ++ V        IG  + V IT+   ++L G +
Sbjct: 440 PNELTGKSENMRPVNFPGNPRLIGQFVDVLITEAMSNSLRGRI 482


>gi|103487545|ref|YP_617106.1| tRNA-i(6)A37 modification enzyme MiaB [Sphingopyxis alaskensis
           RB2256]
 gi|123379656|sp|Q1GRE9|MIAB_SPHAL RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|98977622|gb|ABF53773.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Sphingopyxis alaskensis
           RB2256]
          Length = 444

 Score =  487 bits (1253), Expect = e-135,   Method: Composition-based stats.
 Identities = 247/446 (55%), Positives = 313/446 (70%), Gaps = 10/446 (2%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+ F VKS+GCQMNVYD  RM +M  ++GY       DADL+VLNTCHIREKAAEKVYS 
Sbjct: 6   PKTFHVKSFGCQMNVYDGERMAEMLGAEGYVPAADGADADLVVLNTCHIREKAAEKVYSD 65

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +GR++        +G    + VAGCVAQAEG EI RR+P V+VVVGPQ Y+RLPEL+ RA
Sbjct: 66  IGRLKR------DDGSTPTIAVAGCVAQAEGAEIARRAPSVDVVVGPQAYHRLPELIARA 119

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             G++ +D D   E KF  L    G     +  TAFLT+QEGCDKFCT+CVVPYTRG EI
Sbjct: 120 ERGEKAIDLDMPAESKFGALPKRSGN----QRPTAFLTVQEGCDKFCTYCVVPYTRGAEI 175

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR  + ++ EAR L+  GV EITLLGQNVNAW G+   G       L+  L++  GL R+
Sbjct: 176 SRPFADLIAEARALVAGGVREITLLGQNVNAWIGEDAKGRAIGLDGLIRELAKEDGLERI 235

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           RYTTSHP DM+D LI AHG++D LMP+LHLPVQ+GSDRIL +MNR H+   Y ++I+R+R
Sbjct: 236 RYTTSHPNDMTDGLIVAHGEVDKLMPFLHLPVQAGSDRILAAMNRSHSVESYLKVIERVR 295

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
             RPDIAIS DFIVGFPGE++ DF AT+D+V    YA A+SFKYS R GTP + M +Q+D
Sbjct: 296 EARPDIAISGDFIVGFPGESEADFAATLDIVRATRYAMAYSFKYSRRPGTPAATMDDQID 355

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
           E V  ERL  LQ  L EQQ +FN+A VG+   +L+E+ GK +G+L+G+SPWLQSV + + 
Sbjct: 356 EAVMNERLQRLQALLNEQQQAFNEATVGRTTRLLLERKGKREGQLIGKSPWLQSVHVTAP 415

Query: 444 NHNIGDIIKVRITDVKISTLYGELVV 469
              IGD+I VRIT    ++L  E ++
Sbjct: 416 GLAIGDMIDVRITSAGPNSLGAEPLM 441


>gi|119386409|ref|YP_917464.1| RNA modification protein [Paracoccus denitrificans PD1222]
 gi|229890585|sp|A1B8C4|MIAB_PARDP RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|119377004|gb|ABL71768.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Paracoccus denitrificans
           PD1222]
          Length = 445

 Score =  487 bits (1253), Expect = e-135,   Method: Composition-based stats.
 Identities = 244/457 (53%), Positives = 314/457 (68%), Gaps = 12/457 (2%)

Query: 13  MVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHI 72
           M  Q        ++ F+K+YGCQMNVYDS RM +   ++GY    +  DAD+++LNTCHI
Sbjct: 1   MSDQASKPAPAVKKLFIKTYGCQMNVYDSQRMAEAMGAEGYVLTENQSDADMVLLNTCHI 60

Query: 73  REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT 132
           REKAAEK+YS LGR++ LK  R     DL + VAGCVAQAEGEEI RR PIV++VVGPQ 
Sbjct: 61  REKAAEKLYSDLGRLKPLKAER----PDLKIGVAGCVAQAEGEEIQRRMPIVDLVVGPQA 116

Query: 133 YYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTF 192
           Y+RLP +   AR G R VDT++  EDKFE L         +R   AFLT+QEGCDKFC F
Sbjct: 117 YHRLPAM---ARAG-RGVDTEFPAEDKFEHLP---KPAATRRAPAAFLTVQEGCDKFCAF 169

Query: 193 CVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLY 252
           CVVPYTRG E+SR +S+++ EAR L+  GV EITLLGQNVN W G+G +G +  F  L+ 
Sbjct: 170 CVVPYTRGAEVSRPVSRILAEARDLVARGVREITLLGQNVNGWHGEGPEGSEWGFGRLIR 229

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
           +++EI GL R+RYTTSHP DM+D LI AH D   LMPYLHLPVQSGSDRILK+MNRRHT 
Sbjct: 230 AIAEIDGLDRIRYTTSHPNDMADDLIAAHRDEPKLMPYLHLPVQSGSDRILKAMNRRHTV 289

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
            +Y ++I+RIR  RPDI ++SDFIVGFPGETD D + T++LV  + +  AFSFKYSPR G
Sbjct: 290 DQYLRLIERIREARPDIMLTSDFIVGFPGETDQDHQGTLELVRAVNFGTAFSFKYSPRPG 349

Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS 432
           TP     E ++  V   RL  LQ  L  QQ +  +  VG+ + VL EK G+  G++VG+S
Sbjct: 350 TPAYERPE-IEGAVADARLQELQALLTSQQKAAQEGMVGRELGVLFEKPGRNPGQMVGKS 408

Query: 433 PWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
            +L +V + +    +GD+++VRIT    ++L G L  
Sbjct: 409 DYLHAVFVEAPAAKVGDLVRVRITHSAPNSLAGVLAA 445


>gi|163741718|ref|ZP_02149108.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Phaeobacter gallaeciensis
           2.10]
 gi|161384891|gb|EDQ09270.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Phaeobacter gallaeciensis
           2.10]
          Length = 440

 Score =  487 bits (1253), Expect = e-135,   Method: Composition-based stats.
 Identities = 246/446 (55%), Positives = 321/446 (71%), Gaps = 9/446 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
            P++ F+K+YGCQMNVYDS RM +    +GY    S DDAD+I+LNTCHIREKAAEKVYS
Sbjct: 3   APKKLFIKTYGCQMNVYDSERMAEALGGEGYVETKSPDDADMILLNTCHIREKAAEKVYS 62

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            LGR + LK        DL + VAGCVAQAEG+EI+RR P+V++VVGPQ+Y+RLPE+  +
Sbjct: 63  ELGRFKGLKAE----KPDLKIGVAGCVAQAEGQEIMRRQPLVDLVVGPQSYHRLPEMEAK 118

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           AR G++V+DTD+  EDKFE+L         KRG TAFLT+QEGCDKFC FCVVPYTRG E
Sbjct: 119 AREGEKVLDTDFPEEDKFEKLK---NRPKAKRGPTAFLTVQEGCDKFCAFCVVPYTRGAE 175

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR   +++ EA+ L++ GV EITLLGQNVNA+ G G +G+K T + L++ L ++ GL R
Sbjct: 176 VSRPADRILREAQDLVERGVREITLLGQNVNAYHGAGPNGDK-TLAQLIWELDKVDGLER 234

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP DM D LI+AHG    LMPYLHLPVQ+GSD+ILK MNR HTA  Y ++I+RI
Sbjct: 235 IRFTTSHPNDMQDDLIEAHGTCAKLMPYLHLPVQAGSDKILKRMNRAHTAESYLRLIERI 294

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+ RPDI IS DFIVGFP ET+ DF+AT+DLV+++ Y  A+SFKYS R GTP +    QV
Sbjct: 295 RAARPDILISGDFIVGFPEETEADFQATLDLVEEVKYGTAYSFKYSTRPGTPAAERP-QV 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
           D     +RL  LQ  L +QQ    D+ VG+ + VL EK G+  G++VG+S +L +V +  
Sbjct: 354 DPAEADDRLQRLQALLTKQQREVQDSMVGRDVTVLFEKAGRFPGQMVGKSDYLHAVHVAD 413

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
            +  IGD+ +VRI     ++L G L+
Sbjct: 414 CDRAIGDLARVRILSSGANSLAGALI 439


>gi|312171728|emb|CBX79986.1| UPF0004 protein PA3980 [Erwinia amylovora ATCC BAA-2158]
          Length = 480

 Score =  487 bits (1253), Expect = e-135,   Method: Composition-based stats.
 Identities = 199/455 (43%), Positives = 292/455 (64%), Gaps = 12/455 (2%)

Query: 17  IVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREK 75
           + +   + ++  +K++GCQMN YDS +M D+  S  GY      +DAD+++LNTC IREK
Sbjct: 1   MTNGKSMTKKLHIKTWGCQMNEYDSSKMADLLNSTHGYTLTEQAEDADVLLLNTCSIREK 60

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135
           A EKV+  LGR + LK +      DL++ V GCVA  EG +I +R+  V++V GPQT +R
Sbjct: 61  AQEKVFGLLGRWKKLKEA----NPDLIIGVGGCVASQEGAKIRQRASCVDIVFGPQTLHR 116

Query: 136 LPELLERARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCV 194
           LPE++   R  K  VVD  +   +KF+R+        R  G TAF++I EGC+K+CTFCV
Sbjct: 117 LPEMINSVRGSKSPVVDVSFPEIEKFDRMP-----EPRADGPTAFVSIMEGCNKYCTFCV 171

Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL 254
           VPYTRG E+SR    ++ E  +L   GV E+ LLGQNVNA+RG   DG  C+F++LL  +
Sbjct: 172 VPYTRGEEVSRPADDILFEVAQLAAQGVREVNLLGQNVNAYRGATYDGGICSFAELLRLV 231

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
           + I G+ R+R+TTSHP + +D +I+ + D   L+ YLHLPVQSG+DRIL  M R HTA E
Sbjct: 232 AAIDGIDRIRFTTSHPIEFTDDIIEVYRDTPELVSYLHLPVQSGADRILTLMKRAHTALE 291

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
           Y+ II ++ + RPDI ISSDFI+GFPGET  DF  TM LV +I +  ++SF YS R GTP
Sbjct: 292 YKAIIRKLLAARPDIQISSDFIIGFPGETQADFEQTMKLVGEINFDTSYSFIYSARPGTP 351

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSP 433
            + + + V E+ K +RL  LQ ++ +Q ++++   +G +  +L+E   ++   +L GR+ 
Sbjct: 352 AAELPDDVSEDEKKQRLYVLQDRISQQAMAWSRRKLGTVQRILVEGTSRKNVMELSGRTE 411

Query: 434 WLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
             + V   +   +IG  + V+ITDV  ++L G L+
Sbjct: 412 CNRVVNFEATPDHIGKFVDVKITDVYANSLRGVLL 446


>gi|285018048|ref|YP_003375759.1| 2-methylthioadenine synthetase [Xanthomonas albilineans GPE PC73]
 gi|283473266|emb|CBA15771.1| putative 2-methylthioadenine synthetase protein [Xanthomonas
           albilineans]
          Length = 470

 Score =  486 bits (1252), Expect = e-135,   Method: Composition-based stats.
 Identities = 204/472 (43%), Positives = 294/472 (62%), Gaps = 18/472 (3%)

Query: 7   LIGVAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQ-GYERVNSMDDADLI 65
           ++      S          + ++K++GCQMN YDS +M D+  +  G E  ++ ++AD++
Sbjct: 5   VLHPLPSTSTPATPSPARGKLYIKTHGCQMNEYDSAKMADVLAAAEGLELTDNPEEADVV 64

Query: 66  VLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVN 125
           ++NTC IREKA EKV+S LGR + LK      G  +++ V GCVA  EGE I++R+P V+
Sbjct: 65  LVNTCSIREKAQEKVFSQLGRWKALKAG----GKQVIIGVGGCVASQEGEAIVKRAPYVD 120

Query: 126 VVVGPQTYYRLPELL-ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQE 184
           +V GPQT +RLPEL+  R   G+  VD  +   +KF+RL        R  G +AF++I E
Sbjct: 121 LVFGPQTLHRLPELIRARRASGQSQVDISFPEVEKFDRLP-----EPRAEGPSAFVSIME 175

Query: 185 GCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK------ 238
           GC K+C+FCVVPYTRG EISR    V+ E  +L   GV EI LLGQNVNA+RG       
Sbjct: 176 GCSKYCSFCVVPYTRGEEISRPFEDVLVEVAQLAAQGVREINLLGQNVNAYRGPYADADV 235

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
           G D +      L+ S+++I+G+ R+R+TTSHP + SD L+ A+ D+  L  YLHLPVQ+G
Sbjct: 236 GEDPQHADLGLLIRSIAQIEGIGRIRFTTSHPLEFSDSLVDAYRDVPQLANYLHLPVQAG 295

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           SDRIL +M R +TA E++Q I ++R+VRPDIAISSDFIVGFPGETD DF  TM L++ +G
Sbjct: 296 SDRILSAMKRGYTALEFKQKIRKLRAVRPDIAISSDFIVGFPGETDADFDKTMRLIEDVG 355

Query: 359 YAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI 418
           + Q+FSF YS R GTP +++ +   E VK  RL  LQ  +       + + +G +  VL+
Sbjct: 356 FDQSFSFIYSRRPGTPAADLEDDTPEAVKHARLTRLQAHINAHAQQISRSMIGSVQTVLV 415

Query: 419 EKHGKEK-GKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
           E   K+   +L G++  ++SV        IG  ++V IT+   ++L G +V 
Sbjct: 416 EGPSKKNPAELTGKTENMRSVNFPGHPRLIGQFVEVTITEALSNSLRGRVVA 467


>gi|157369463|ref|YP_001477452.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Serratia proteamaculans
           568]
 gi|229890662|sp|A8GB34|MIAB_SERP5 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|157321227|gb|ABV40324.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Serratia proteamaculans
           568]
          Length = 474

 Score =  486 bits (1252), Expect = e-135,   Method: Composition-based stats.
 Identities = 203/449 (45%), Positives = 290/449 (64%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++  +K++GCQMN YDS +M D+  S  GY+  ++ ++AD+++LNTC IREKA EKV+
Sbjct: 1   MTKKLHIKTWGCQMNEYDSSKMADLLGSTHGYQWTDNAEEADVLLLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           + LGR R LK         L++ V GCVA  EGE I  R+P V+VV GPQT +RLPE+L 
Sbjct: 61  AMLGRWRLLKEK----NPALIIGVGGCVASQEGEHIRSRAPCVDVVFGPQTLHRLPEMLN 116

Query: 142 RARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
             +  +  +VD  +   +KF+RL        R  G TAF++I EGC+K+CTFCVVPYTRG
Sbjct: 117 HVQGTRSPIVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTFCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR    V+ E  +L   GV E+ LLGQNVNA+RG   DG  C+F++LL  ++ I G+
Sbjct: 172 EEVSRPSDDVLFEVAQLAAQGVREVNLLGQNVNAYRGATYDGGICSFAELLRLVAAIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+RYTTSHP + +D +I  + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II 
Sbjct: 232 DRIRYTTSHPIEFTDDIIAVYEDTPELVSFLHLPVQSGSDRILTMMKRAHTALEYKAIIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R  RPDI +SSDFI+GFPGET  DF  TM+L+ +I +  +FSF YS R GTP ++M++
Sbjct: 292 KLRKARPDIQLSSDFIIGFPGETQADFEQTMNLIAEINFDTSFSFIYSSRPGTPAADMVD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439
            V E+ K +RL  LQ ++ +Q + F+   +G +  +L+E   ++   +L GR+   + V 
Sbjct: 352 DVSEDEKKQRLYILQDRINQQVLQFSRRMLGTVQRILVEGTSRKSVMELAGRTACNRMVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG  + V IT+V  ++L G +V
Sbjct: 412 FEGTPDMIGQFVDVEITEVLTNSLRGTVV 440


>gi|254467232|ref|ZP_05080643.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Rhodobacterales bacterium
           Y4I]
 gi|206688140|gb|EDZ48622.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Rhodobacterales bacterium
           Y4I]
          Length = 440

 Score =  486 bits (1252), Expect = e-135,   Method: Composition-based stats.
 Identities = 247/446 (55%), Positives = 320/446 (71%), Gaps = 9/446 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
            P++ F+K+YGCQMNVYDS RM +    +GY    S DDAD+I+LNTCHIREKAAEKVYS
Sbjct: 3   APKKLFIKTYGCQMNVYDSERMAEALGGEGYVETKSADDADMILLNTCHIREKAAEKVYS 62

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            LGR + LK        DL + VAGCVAQAEGEEI+RR P+V++VVGPQ+Y+RLPE+  +
Sbjct: 63  ELGRFKGLKAQ----KPDLKIGVAGCVAQAEGEEIMRRQPLVDLVVGPQSYHRLPEMEAK 118

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            R G++V+DTD+  EDKFE+L         KRG TAFLT+QEGCDKFC FCVVPYTRG E
Sbjct: 119 TRAGQKVLDTDFPEEDKFEKLK---NRPKAKRGPTAFLTVQEGCDKFCAFCVVPYTRGAE 175

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR   +++ EA+ L++ GV EITLLGQNVNA+ G G +G+  T + L++ L +I GL R
Sbjct: 176 VSRPADRILREAQDLVERGVREITLLGQNVNAYHGAGPNGD-LTLAQLIWELDKIDGLER 234

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP DM D LI+AHG    LMPYLHLPVQ+GSD+ILK MNR HTA  Y ++I+RI
Sbjct: 235 IRFTTSHPNDMQDDLIEAHGTCAKLMPYLHLPVQAGSDKILKRMNRSHTAESYIRLIERI 294

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+ RPDI IS DFIVGFP ET++DF+ATMDLV+++ Y  A+SFKYS R GTP +    QV
Sbjct: 295 RAARPDILISGDFIVGFPEETEEDFQATMDLVEEVKYGTAYSFKYSTRPGTPAAERA-QV 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
           D     +RL  LQ  L  QQ    D+ VG+ + VL EK G+  G++VG+S +L +V +  
Sbjct: 354 DPAAADDRLQRLQALLTRQQREVQDSMVGREVGVLFEKPGRLPGQMVGKSDYLHAVHVAD 413

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
            N + G++ +VRI     ++L GEL+
Sbjct: 414 CNRDAGELARVRIVSSGANSLAGELI 439


>gi|253999825|ref|YP_003051888.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Methylovorus sp. SIP3-4]
 gi|313201799|ref|YP_004040457.1| tRNA-i(6)a37 thiotransferase enzyme miab [Methylovorus sp. MP688]
 gi|253986504|gb|ACT51361.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Methylovorus sp. SIP3-4]
 gi|312441115|gb|ADQ85221.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Methylovorus sp. MP688]
          Length = 443

 Score =  486 bits (1252), Expect = e-135,   Method: Composition-based stats.
 Identities = 200/450 (44%), Positives = 279/450 (62%), Gaps = 12/450 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQ-GYERVNSMDDADLIVLNTCHIREKAAEKVY 81
            P++ F+K++GCQMN YDS RM DM  +  G +  ++ +DAD+I+LNTC +REKA EKV+
Sbjct: 3   TPKKVFIKTFGCQMNEYDSSRMADMLNAADGMQPTDNPEDADVILLNTCSVREKAQEKVF 62

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S LGR   LK        +L++ V GCVA  EG+ I+ R+P V+VV GPQT +RLPEL+ 
Sbjct: 63  SHLGRFIPLKEK----NPNLVIGVGGCVASQEGQHIVDRAPYVDVVFGPQTLHRLPELIA 118

Query: 142 RARF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
             R  G   VD  +   +KF+ L        R  G  AFL+I EGC+K+C+FCVVPYTRG
Sbjct: 119 NRRSSGLSQVDISFPEIEKFDHLPP-----PRVEGAAAFLSIMEGCNKYCSFCVVPYTRG 173

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E SR    ++ EA +L + GV EITLLGQNVNA+R    DG     + L+  ++EI  +
Sbjct: 174 EEFSRPFEDILVEAIQLAEQGVKEITLLGQNVNAYRSTSADGTAADLAMLIDYIAEIPQI 233

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+TTSHP +MS+ LI     +  L+ +LHLPVQ+GSDR+L  M R +TA +Y+ II 
Sbjct: 234 ERIRFTTSHPNEMSEALIDCFARIPKLVSHLHLPVQAGSDRVLMGMKRNYTALQYKSIIR 293

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R  RPDI I+SDFIVGFPGE++ DF AT+ L+  +G+  ++SF YS R GTP S + +
Sbjct: 294 KLRRARPDICITSDFIVGFPGESEQDFAATLKLMQDVGFDFSYSFTYSARPGTPASYLPD 353

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439
              E  K ERL  LQ+    Q  + +++ VG +  VL+E   K+  G+L GR+   + V 
Sbjct: 354 DTSEETKLERLSRLQELNEAQGKAVSESMVGSVQRVLVESLSKKDTGELAGRTDNNRIVN 413

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELVV 469
                  I   + V+IT     TL GE + 
Sbjct: 414 FPGDAKLINQFVHVKITQAMPHTLRGECLA 443


>gi|209883674|ref|YP_002287531.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Oligotropha
           carboxidovorans OM5]
 gi|229890581|sp|B6JCT6|MIAB_OLICO RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|209871870|gb|ACI91666.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Oligotropha
           carboxidovorans OM5]
          Length = 475

 Score =  486 bits (1252), Expect = e-135,   Method: Composition-based stats.
 Identities = 233/449 (51%), Positives = 319/449 (71%), Gaps = 5/449 (1%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P++  +KSYGCQMNVYD+ RM D    +G+       +ADL++LNTCHIREKA+EKV+S 
Sbjct: 6   PRKLHIKSYGCQMNVYDAQRMVDTLAPEGFVETADPAEADLVILNTCHIREKASEKVFSE 65

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR+R +K    + G ++ + VAGCVAQAEG EI RR+  V+VVVGPQ+Y+ LP+LL +A
Sbjct: 66  LGRLRVIKEEAARTGREMKIAVAGCVAQAEGAEITRRASTVDVVVGPQSYHNLPKLLAKA 125

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           R G   ++T++ +EDKF  L        R RGV+AF+T+QEGCDKFCTFCVVPYTRG+E+
Sbjct: 126 RDGAPAIETEFPIEDKFSALPAPKPAAIRARGVSAFVTVQEGCDKFCTFCVVPYTRGMEV 185

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR ++ +V +A++L +NGV E+TL+GQNVNA+ G   +G   +   LL+ L+ + G+ RL
Sbjct: 186 SRPVADIVADAKRLAENGVRELTLIGQNVNAYHGDDENGRTSSLGRLLHRLAMLPGIARL 245

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           RY+TSHPRD+ D LI+AH D+  +MP++HLPVQSGSDRIL +MNR+HTA +Y + I+R R
Sbjct: 246 RYSTSHPRDVDDSLIEAHRDIPAVMPFVHLPVQSGSDRILAAMNRKHTAADYIRTIERFR 305

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE--- 380
            VRP+IA SSDFIVGFPGE++ DF  T+ LV +IGYA A+SFKYSPR GTP ++M E   
Sbjct: 306 KVRPEIAFSSDFIVGFPGESEQDFADTLALVTQIGYAGAYSFKYSPRPGTPAADMQETDT 365

Query: 381 --QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSV 438
              V   V  ERL  LQ  +  QQ SFN A +G+ +EVL E+  +E G++VGR+ +LQ  
Sbjct: 366 ALAVPAAVMDERLAQLQALIDAQQASFNRAAIGRTVEVLFERAAREPGQIVGRTAYLQPA 425

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGEL 467
            + +    IG ++ V I  ++  +L G L
Sbjct: 426 HVMASPDIIGKVLPVTIDSLERYSLKGRL 454


>gi|221134934|ref|ZP_03561237.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Glaciecola sp. HTCC2999]
          Length = 476

 Score =  486 bits (1252), Expect = e-135,   Method: Composition-based stats.
 Identities = 197/449 (43%), Positives = 290/449 (64%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + Q+ ++K++GCQMN YDS +M D+  +  GY      +DAD+I+LNTC IREKA EKV+
Sbjct: 1   MSQKLYIKTWGCQMNEYDSEKMADLLDATHGYTLAEEAEDADVILLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR +NLKN    +  DL++ V GCVA  EG+ I +R+P V+++ GPQT +RLPE+++
Sbjct: 61  HQLGRWKNLKN----DKPDLIIGVGGCVASQEGDHIRQRAPYVDIIFGPQTLHRLPEMIK 116

Query: 142 RARFG-KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
             + G K VVD  +   +KF+RL        R  G +AF++I EGC K+CTFCVVPYTRG
Sbjct: 117 DIKGGSKSVVDVSFPEIEKFDRLP-----EPRAEGPSAFVSIMEGCSKYCTFCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR +  V+ E  +L + GV E+ LLGQNVNA+RG   DG  C F++LL  ++ I G+
Sbjct: 172 EEVSRPVDDVLLEVAQLAEQGVREVNLLGQNVNAFRGPHFDGSICRFAELLELIASIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+RYTTSHP + +D +I+A+  +  L+ +LHLPVQSGSDRIL  M R HTA EY+  I 
Sbjct: 232 DRIRYTTSHPVEFTDDIIEAYASIPELVDHLHLPVQSGSDRILNLMKRGHTAIEYKSKIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
            ++ +RP++++SSDFI+GFPGE++ DF  TM L++ I Y  +FSF YS R GTP +++ +
Sbjct: 292 ALKKIRPNLSMSSDFIIGFPGESEQDFADTMKLINDIEYDLSFSFIYSARPGTPAADLPD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439
            V E  K +RL  LQ+++ +         +     +L+E   K+   +L GR+   + V 
Sbjct: 352 DVSEAEKKQRLWILQERINQSAQRIARNMMDTEQRILVEGPSKKNPMELTGRTENNRVVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG  + V++TDV  ++L G ++
Sbjct: 412 FEGTPDMIGQFVDVKVTDVYSNSLRGNVI 440


>gi|58426983|gb|AAW76020.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae
           KACC10331]
          Length = 550

 Score =  486 bits (1252), Expect = e-135,   Method: Composition-based stats.
 Identities = 201/462 (43%), Positives = 293/462 (63%), Gaps = 17/462 (3%)

Query: 14  VSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHI 72
           V++     +V  + ++K++GCQMN YDS +M D+  + +G E  ++ ++AD++++NTC I
Sbjct: 91  VARPSAPAVVRGKLYIKTHGCQMNEYDSAKMADVLAASEGLELTDNPEEADVVLVNTCSI 150

Query: 73  REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT 132
           REKA EKV+S LGR + LK      G  +++ V GCVA  EGE I++R+P V++V GPQT
Sbjct: 151 REKAQEKVFSQLGRWKALKAG----GKPVIIGVGGCVASQEGEAIVKRAPYVDLVFGPQT 206

Query: 133 YYRLPELL-ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCT 191
            +RLPEL+  R   GK  VD  +   +KF+RL        R  G +AF++I EGC K+C+
Sbjct: 207 LHRLPELIRARRESGKSQVDISFPEIEKFDRLP-----EPRAEGPSAFVSIMEGCSKYCS 261

Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-----GLDGEKCT 246
           FCVVPYTRG E+SR    V+ E  +L   GV EI LLGQNVNA+RG      G   +   
Sbjct: 262 FCVVPYTRGEEVSRPFEDVLVEVAQLAAQGVREINLLGQNVNAYRGAYGADAGDPAQYAD 321

Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306
              L+ ++++I+G+ R+R+TTSHP + SD L+ A+ D+  L  YLHLPVQ+GSDRIL +M
Sbjct: 322 LGLLIRTIAQIEGIGRIRFTTSHPLEFSDSLVDAYRDVPQLANYLHLPVQAGSDRILSAM 381

Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
            R +TA E++  I ++R+VRPDI+ISSDFIVGFPGET+ DF  TM L++ +G+ Q+FSF 
Sbjct: 382 KRGYTALEFKSRIRKLRAVRPDISISSDFIVGFPGETEADFEKTMKLIEDVGFDQSFSFV 441

Query: 367 YSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEK 425
           YS R GTP S++ +   E VK  RL  LQ  +     S + + VG +  VL+E    ++ 
Sbjct: 442 YSRRPGTPASDLQDDTPETVKQARLARLQAHISAHAASISQSMVGSVQRVLVEGPSRRDP 501

Query: 426 GKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
            +L G+S  ++ V        IG  + V IT+   ++L G +
Sbjct: 502 NELTGKSENMRPVNFPGNPRLIGQFVDVLITEAMSNSLRGRI 543


>gi|126464040|ref|YP_001045153.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Rhodobacter
           sphaeroides ATCC 17029]
 gi|229890628|sp|A3PPW5|MIAB_RHOS1 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|126105851|gb|ABN78381.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Rhodobacter sphaeroides
           ATCC 17029]
          Length = 436

 Score =  486 bits (1252), Expect = e-135,   Method: Composition-based stats.
 Identities = 244/442 (55%), Positives = 313/442 (70%), Gaps = 14/442 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F+K+YGCQMNVYDS RM +   ++GY      ++AD+++LNTCHIREKAAEKVYS L
Sbjct: 5   RKLFIKTYGCQMNVYDSERMAEALGAKGYVLTEVAEEADMVLLNTCHIREKAAEKVYSDL 64

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR+R LK +      DL + VAGCVAQAEGEEIL+R P+V++VVGPQ+Y+RLP++L+R  
Sbjct: 65  GRLRPLKTA----KPDLKIGVAGCVAQAEGEEILKRMPLVDLVVGPQSYHRLPDMLDRTE 120

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G RVVDTD+  EDKF+ L          RG  AFLT+QEGCDKFC FCVVPYTRG E+S
Sbjct: 121 GGARVVDTDFPEEDKFDHLP----ERKATRGPAAFLTVQEGCDKFCAFCVVPYTRGAEVS 176

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R  ++++ EAR L++ GV EITLLGQNVNAW   G          L+  L+ I GL RLR
Sbjct: 177 RPFARLMAEARGLVERGVREITLLGQNVNAWSSDG-----RGLGGLIRELARIDGLERLR 231

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           YTTSHP DM+D LI+AHG    LMPYLHLPVQSGSDRILK+MNR+HTA  Y ++I+RIR+
Sbjct: 232 YTTSHPNDMADDLIEAHGAEPKLMPYLHLPVQSGSDRILKAMNRKHTAEHYLRLIERIRA 291

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
            RPDI ++SDFIVGFPGET+ DF AT+DL+  +G+  AFSFKYS R GTP +   E +  
Sbjct: 292 ARPDILLTSDFIVGFPGETEADFEATLDLIRAVGFGSAFSFKYSARPGTPAAEKPE-LPG 350

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
            V   RL  LQ  + EQQ +   A VG+ + VL EK G+  G++VG+S  L +V +  K 
Sbjct: 351 EVCDARLQRLQALVTEQQRAAQMAMVGREVGVLYEKAGRLPGQMVGKSDHLHAVHVEDKA 410

Query: 445 HNIGDIIKVRITDVKISTLYGE 466
             +GD+++VRIT    ++L GE
Sbjct: 411 GRVGDLVRVRITASAPNSLAGE 432


>gi|238795390|ref|ZP_04638905.1| hypothetical protein ymoll0001_9790 [Yersinia mollaretii ATCC
           43969]
 gi|238720509|gb|EEQ12310.1| hypothetical protein ymoll0001_9790 [Yersinia mollaretii ATCC
           43969]
          Length = 486

 Score =  486 bits (1251), Expect = e-135,   Method: Composition-based stats.
 Identities = 199/450 (44%), Positives = 286/450 (63%), Gaps = 12/450 (2%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKV 80
            + ++  +K++GCQMN YDS +M D+  S  GY+   + +DADL++LNTC IREKA EKV
Sbjct: 12  PMTKKLHIKTWGCQMNEYDSSKMADLLASTHGYQLTETPEDADLLLLNTCSIREKAQEKV 71

Query: 81  YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140
           +S LG  ++LK        +L++ V GCVA  EGE + +R+P V+++ GPQT +RLPE++
Sbjct: 72  FSLLGHWKSLKEK----NPELIIGVGGCVASQEGEHLRQRAPCVDIIFGPQTLHRLPEMI 127

Query: 141 ERARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
              +     VVD  +   +KF+RL        R  G TAF++I EGC+K+CTFCVVPYTR
Sbjct: 128 NHVQGSHSSVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTFCVVPYTR 182

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G E+SR    ++ E  +L   GV E+ LLGQNVNA+RG   DG+ C+F++LL  ++ I G
Sbjct: 183 GEEVSRPSDDILFEIAQLAAQGVREVNLLGQNVNAYRGPTYDGDICSFAELLRLVAAIDG 242

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           + RLR+TTSHP + +D +I  + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II
Sbjct: 243 IDRLRFTTSHPIEFTDDIIDVYRDTPELVSFLHLPVQSGSDRILTMMKRAHTALEYKAII 302

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            ++R  RPDI ISSDFI+GFPGET  DF  T+ LV  I +  ++SF YS R GTP +++ 
Sbjct: 303 RKLRQARPDIQISSDFIIGFPGETQHDFEQTLKLVADIHFDTSYSFIYSSRPGTPAADLP 362

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLVGRSPWLQSV 438
           + V E  K +RL  LQ+++ +Q +  +   +G +  +L+E   ++   +L GR+   + V
Sbjct: 363 DDVSEEEKKQRLHILQQRITQQAMEISRKMIGSVQRILVEGPSRKNAMELAGRTENNRVV 422

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468
                   IG  + V I DV  S+L G L+
Sbjct: 423 NFEGVPSMIGQFVDVEIIDVYASSLRGILL 452


>gi|67459670|ref|YP_247294.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Rickettsia felis
           URRWXCal2]
 gi|75535934|sp|Q4UK06|MIAB_RICFE RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|67005203|gb|AAY62129.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Rickettsia felis
           URRWXCal2]
          Length = 445

 Score =  486 bits (1251), Expect = e-135,   Method: Composition-based stats.
 Identities = 241/449 (53%), Positives = 335/449 (74%), Gaps = 7/449 (1%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + ++ ++K+YGCQMNVYDS++M+D+ +  GYE   +++DAD+I+L TCHIREKAAEK YS
Sbjct: 1   MSKKLYIKTYGCQMNVYDSVKMQDLLYPFGYEPTENIEDADVIILITCHIREKAAEKTYS 60

Query: 83  FLGRIRNLKNSRIKEG-GDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
            LGRI+ L+++R K+G    ++VVAGCVAQAEGEEI  R+P V++VVGPQ+YY LPEL+ 
Sbjct: 61  ELGRIKKLQDTRKKQGLNSAIIVVAGCVAQAEGEEIFSRAPYVDIVVGPQSYYNLPELIS 120

Query: 142 RA-RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           +  R  K ++D D+  E KF+ L          +G ++F+++QEGCDKFCTFCVVPYTRG
Sbjct: 121 KVVRHEKHLIDLDFVEEAKFDNLP----EQLYPQGASSFISVQEGCDKFCTFCVVPYTRG 176

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E SR++ QV  EA K++ +G  EITLLGQNVNA+ GKG D +  T +DLL  L++I  L
Sbjct: 177 AEFSRNVEQVYREALKVVSSGAKEITLLGQNVNAYHGKGPDDKIFTLADLLGHLAQIPNL 236

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            RLRY TSHP DM+D LIK HG    LMP+LHLPVQSGS++ILK+MNR+H    Y  II+
Sbjct: 237 ERLRYMTSHPIDMTDDLIKLHGTEPKLMPFLHLPVQSGSNKILKAMNRKHDRDYYFDIIN 296

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           R+R  RPDI +SSDFIVGFPGETD+DF  T+DLV ++ Y Q +SFKYSPR GTPG+   +
Sbjct: 297 RLRETRPDIVLSSDFIVGFPGETDEDFEDTLDLVRRVKYGQCYSFKYSPRPGTPGATRTD 356

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440
           QV E++K+ERL  LQ++L  QQ++FN++CVG I++VL +++GK   +++G++P++QSV +
Sbjct: 357 QVPEHIKSERLTILQQELTAQQLAFNESCVGSIMKVLFDRNGKFDDQIIGKTPYMQSVYI 416

Query: 441 NSKN-HNIGDIIKVRITDVKISTLYGELV 468
            + N   +G I  V+IT    ++L GE++
Sbjct: 417 QNPNKSLLGKITDVKITKAASNSLTGEVI 445


>gi|157827747|ref|YP_001496811.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Rickettsia bellii OSU
           85-389]
 gi|229890631|sp|A8GY24|MIAB_RICB8 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|157803051|gb|ABV79774.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Rickettsia bellii OSU
           85-389]
          Length = 446

 Score =  485 bits (1250), Expect = e-135,   Method: Composition-based stats.
 Identities = 238/448 (53%), Positives = 332/448 (74%), Gaps = 7/448 (1%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + ++ ++K+YGCQMNVYDS++M+D+ +  GYE   ++++AD+I+LNTCHIREKAAEK YS
Sbjct: 1   MSKKLYIKTYGCQMNVYDSVKMQDLLYPYGYEPTENIEEADVIILNTCHIREKAAEKTYS 60

Query: 83  FLGRIRNLKNSRIKEG-GDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
            LGRI+ L+++R K+G    ++VVAGCVAQAEGEEI  R+P V++VVGPQ+YY LPEL+ 
Sbjct: 61  ELGRIKKLQDARKKQGLNSAIIVVAGCVAQAEGEEIFTRTPYVDIVVGPQSYYNLPELIS 120

Query: 142 RA-RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           +  R  K ++D D+  E KF++L          +G ++F+++QEGCDKFCTFCVVPYTRG
Sbjct: 121 KVVRHEKHLIDLDFVEEAKFDQLP----EQLYPQGASSFISVQEGCDKFCTFCVVPYTRG 176

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E SR++ QV  EA K++ +G  EI LLGQNVNA+ GK  D +  T +DL+  L +I  L
Sbjct: 177 AEFSRNVEQVYREALKVVSSGAKEIMLLGQNVNAYHGKTSDDKVFTLADLIRHLVKIPNL 236

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            RLRYTTSHP DM+D LI  HG    LMP+LHLPVQSGS++ LK+MNR+H    Y  IID
Sbjct: 237 ERLRYTTSHPIDMTDDLISLHGLEPKLMPFLHLPVQSGSNKTLKAMNRKHDRDYYFDIID 296

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           R+R  R DI +SSDFIVGFPGETD+DF  T+DLV K+ Y Q +SFKYSPR GTPG+   +
Sbjct: 297 RLRKARADIVLSSDFIVGFPGETDEDFADTLDLVRKVKYGQCYSFKYSPRPGTPGATRTD 356

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440
           QV E++K+ERL  LQK+L  QQ++FN++C+G  ++VL ++ GK   +++G++P++QSV +
Sbjct: 357 QVPEHIKSERLTILQKELAAQQLAFNESCIGSTMKVLFDRDGKFDDQIIGKTPYMQSVYI 416

Query: 441 NSKN-HNIGDIIKVRITDVKISTLYGEL 467
            + N   +G II+V+IT   +++L GE+
Sbjct: 417 KNPNKDLLGKIIEVKITKAALNSLSGEI 444


>gi|91204926|ref|YP_537281.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Rickettsia bellii
           RML369-C]
 gi|122426084|sp|Q1RKC2|MIAB_RICBR RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|91068470|gb|ABE04192.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Rickettsia bellii
           RML369-C]
          Length = 446

 Score =  485 bits (1250), Expect = e-135,   Method: Composition-based stats.
 Identities = 238/448 (53%), Positives = 332/448 (74%), Gaps = 7/448 (1%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + ++ ++K+YGCQMNVYDS++M+D+ +  GYE   ++++AD+I+LNTCHIREKAAEK YS
Sbjct: 1   MSKKLYIKTYGCQMNVYDSVKMQDLLYPYGYEPTENIEEADVIILNTCHIREKAAEKTYS 60

Query: 83  FLGRIRNLKNSRIKEG-GDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
            LGRI+ L+++R K+G    ++VVAGCVAQAEGEEI  R+P V++VVGPQ+YY LPEL+ 
Sbjct: 61  ELGRIKKLQDARKKQGLNSAIIVVAGCVAQAEGEEIFTRTPYVDIVVGPQSYYNLPELIS 120

Query: 142 RA-RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           +  R  K ++D D+  E KF++L          +G ++F+++QEGCDKFCTFCVVPYTRG
Sbjct: 121 KVVRHEKHLIDLDFVEEAKFDQLP----EQLYPQGASSFISVQEGCDKFCTFCVVPYTRG 176

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E SR++ QV  EA K++ +G  EI LLGQNVNA+ GK  D +  T +DL+  L +I  L
Sbjct: 177 AEFSRNVEQVYREALKIVSSGAKEIMLLGQNVNAYHGKTSDDKVFTLADLIRHLVKIPNL 236

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            RLRYTTSHP DM+D LI  HG    LMP+LHLPVQSGS++ LK+MNR+H    Y  IID
Sbjct: 237 ERLRYTTSHPIDMTDDLISLHGLEPKLMPFLHLPVQSGSNKTLKAMNRKHDRDYYFDIID 296

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           R+R  R DI +SSDFIVGFPGETD+DF  T+DLV K+ Y Q +SFKYSPR GTPG+   +
Sbjct: 297 RLRKARADIVLSSDFIVGFPGETDEDFADTLDLVRKVKYGQCYSFKYSPRPGTPGATRTD 356

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440
           QV E++K+ERL  LQK+L  QQ++FN++C+G  ++VL ++ GK   +++G++P++QSV +
Sbjct: 357 QVPEHIKSERLTILQKELAAQQLAFNESCIGSTMKVLFDRDGKFDDQIIGKTPYMQSVYI 416

Query: 441 NSKN-HNIGDIIKVRITDVKISTLYGEL 467
            + N   +G II+V+IT   +++L GE+
Sbjct: 417 KNPNKDLLGKIIEVKITKAALNSLSGEI 444


>gi|221369608|ref|YP_002520704.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Rhodobacter
           sphaeroides KD131]
 gi|221162660|gb|ACM03631.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Rhodobacter sphaeroides
           KD131]
          Length = 436

 Score =  485 bits (1250), Expect = e-135,   Method: Composition-based stats.
 Identities = 244/442 (55%), Positives = 313/442 (70%), Gaps = 14/442 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F+K+YGCQMNVYDS RM +   ++GY      ++AD+++LNTCHIREKAAEKVYS L
Sbjct: 5   RKLFIKTYGCQMNVYDSERMAEALGAKGYVLTEVAEEADMVLLNTCHIREKAAEKVYSDL 64

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR+R LK +      DL + VAGCVAQAEGEEIL+R P+V++VVGPQ+Y+RLP++L+R  
Sbjct: 65  GRLRPLKTA----KPDLKIGVAGCVAQAEGEEILKRMPLVDLVVGPQSYHRLPDMLDRTE 120

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G RVVDTD+  EDKF+ L          RG  AFLT+QEGCDKFC FCVVPYTRG E+S
Sbjct: 121 GGARVVDTDFPEEDKFDHLP----ERKATRGPAAFLTVQEGCDKFCAFCVVPYTRGAEVS 176

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R  ++++ EAR L++ GV EITLLGQNVNAW   G          L+  L+ I GL RLR
Sbjct: 177 RPFARLMAEARGLVERGVREITLLGQNVNAWSSDG-----RGLGGLIRELARIDGLERLR 231

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           YTTSHP DM+D LI+AHG    LMPYLHLPVQSGSDRILK+MNR+HTA  Y ++I+RIR+
Sbjct: 232 YTTSHPNDMADDLIEAHGAEPKLMPYLHLPVQSGSDRILKAMNRKHTAEHYLRLIERIRA 291

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
            RPDI ++SDFIVGFPGET+ DF AT+DL+  +G+  AFSFKYS R GTP +   E +  
Sbjct: 292 ARPDILLTSDFIVGFPGETEADFEATLDLIRAVGFGSAFSFKYSARPGTPAAEKPE-LPA 350

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
            V   RL  LQ  + EQQ +   A VG+ + VL EK G+  G++VG+S  L +V +  K 
Sbjct: 351 EVCDARLQRLQALVTEQQRAAQVAMVGREVGVLYEKAGRLPGQMVGKSDHLHAVHVEDKA 410

Query: 445 HNIGDIIKVRITDVKISTLYGE 466
             +GD+++VRIT    ++L GE
Sbjct: 411 GRVGDLVRVRITASAPNSLAGE 432


>gi|238791657|ref|ZP_04635295.1| hypothetical protein yinte0001_28150 [Yersinia intermedia ATCC
           29909]
 gi|238729273|gb|EEQ20789.1| hypothetical protein yinte0001_28150 [Yersinia intermedia ATCC
           29909]
          Length = 474

 Score =  485 bits (1250), Expect = e-135,   Method: Composition-based stats.
 Identities = 199/446 (44%), Positives = 282/446 (63%), Gaps = 12/446 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++  +K++GCQMN YDS +M D+  S  GY+     ++ADL++LNTC IREKA EKV+
Sbjct: 1   MTKKLHIKTWGCQMNEYDSSKMADLLASTHGYQLTEIPEEADLLLLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S LG  + LK        +L++ V GCVA  EGE + +R+P V+V+ GPQT +RLPE++ 
Sbjct: 61  SLLGHWKLLKAK----NPNLIIGVGGCVASQEGEHLRQRAPCVDVIFGPQTLHRLPEMIN 116

Query: 142 RARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
             +     VVD  +   +KF+RL        R  G TAF++I EGC+K+CTFCVVPYTRG
Sbjct: 117 HVQGSHSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTFCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            EISR    ++ E  +L   GV E+ LLGQNVNA+RG   DG+ C+F++LL  ++ I G+
Sbjct: 172 EEISRPSDDILFEIAQLASQGVREVNLLGQNVNAYRGATYDGDICSFAELLRLVAAIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+TTSHP + +D +I  + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II 
Sbjct: 232 DRIRFTTSHPIEFTDDIIDVYRDTPELVSFLHLPVQSGSDRILTMMKRAHTALEYKSIIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R  RPDI ISSDFI+GFPGET  DF  T+ LV  I +  ++SF YSPR GTP +++ +
Sbjct: 292 KLRQARPDIQISSDFIIGFPGETQQDFEQTIKLVADIHFDTSYSFIYSPRPGTPAADLPD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLVGRSPWLQSVV 439
            V E  K +RL  LQ+++ +Q +  +   VG +  +L+E   ++   +L GR+   + V 
Sbjct: 352 DVSEEEKKQRLHILQQRITQQAMEISREMVGSVQRILVEGTSRKSAVELAGRTENNRVVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYG 465
                  IG  + V I  V  S+L G
Sbjct: 412 FEGTPEMIGKFVDVEIVGVYASSLRG 437


>gi|33600343|ref|NP_887903.1| hypothetical protein BB1357 [Bordetella bronchiseptica RB50]
 gi|81431747|sp|Q7WMN3|MIAB_BORBR RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|33567942|emb|CAE31855.1| conserved hypothetical protein [Bordetella bronchiseptica RB50]
          Length = 475

 Score =  485 bits (1250), Expect = e-135,   Method: Composition-based stats.
 Identities = 195/446 (43%), Positives = 292/446 (65%), Gaps = 13/446 (2%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + +++++GCQMN YDS +M D+  + QG E  ++ +DAD+I+ NTC +REKA EKV+S L
Sbjct: 28  KLYIRTFGCQMNEYDSDKMADVLRADQGLELTDNPEDADVILFNTCSVREKAQEKVFSDL 87

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR+++LK    K+  +L++ V GCVA  EGE I++R+P V+VV GPQT +RLP+L++R R
Sbjct: 88  GRVQHLK----KQNPNLVIGVGGCVASQEGEAIVKRAPYVDVVFGPQTLHRLPDLIKRRR 143

Query: 145 -FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             G   VD  +   +KF+ L        R  G TAF++I EGC K+C+FCVVPYTRG E+
Sbjct: 144 AQGVSQVDISFPEIEKFDALPP-----PRVDGATAFVSIMEGCSKYCSFCVVPYTRGEEV 198

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVR 262
           SR    V+ E   L D GV E+TLLGQNVNA+RG   D GE   F+ LL  + EI G+ R
Sbjct: 199 SRPFDDVLLEVADLADQGVKEVTLLGQNVNAYRGAMGDSGEIADFAMLLEYVHEIPGIER 258

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +RYTTSHP++M+  ++ A+  L  L+ +LHLPVQ+GSDR+L +M R +TA E++ ++ R+
Sbjct: 259 IRYTTSHPKEMTQRMVDAYARLPKLVSFLHLPVQAGSDRVLAAMKRGYTALEFKSVVRRL 318

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+ RP + +SSDFIVGFPGET++DF+ TM L++ +G+  +FSF YS R GTP +++ +  
Sbjct: 319 RAARPSLTLSSDFIVGFPGETEEDFQKTMKLIEDVGFDTSFSFVYSRRPGTPAADLHDDT 378

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLN 441
            ++VK  RL  LQ  + +Q  +     +G    VL+E    ++  +L+GR+   + V   
Sbjct: 379 PQDVKLRRLQQLQALINQQAAAIAQGMIGTRQRVLVEGPSRRDPNELMGRTENNRIVNFP 438

Query: 442 SKNHNIGDIIKVRITDVKISTLYGEL 467
                IG ++ V +T    ++L G +
Sbjct: 439 GVPRLIGHMVDVVVTHAHTNSLRGRV 464


>gi|121601992|ref|YP_989492.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bartonella bacilliformis
           KC583]
 gi|229890427|sp|A1UU39|MIAB_BARBK RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|120614169|gb|ABM44770.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bartonella bacilliformis
           KC583]
          Length = 458

 Score =  485 bits (1250), Expect = e-135,   Method: Composition-based stats.
 Identities = 265/448 (59%), Positives = 341/448 (76%), Gaps = 2/448 (0%)

Query: 19  DQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAE 78
              I  ++ F+K+YGCQMNVYDS RM D   +QGY    + +DADLI++NTCHIREKAAE
Sbjct: 9   TPPIASKKVFIKTYGCQMNVYDSQRMNDSLSAQGYVTTQTPNDADLILVNTCHIREKAAE 68

Query: 79  KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPE 138
           K+YS LGR+R ++  R  E   L++ V GCVAQAEG+EILRRSP V++VVGPQ Y+RLPE
Sbjct: 69  KLYSDLGRLRMMRQKRTSEKP-LMIGVTGCVAQAEGDEILRRSPTVDLVVGPQMYHRLPE 127

Query: 139 LLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
           LL++A+ GK++V+T+Y+VEDKF  L   +    +KRGV+AFLT+QEGCDKFCTFCVVPYT
Sbjct: 128 LLQQAQQGKKIVETNYAVEDKFNHLPPHNKRAVQKRGVSAFLTVQEGCDKFCTFCVVPYT 187

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258
           RG EISRS+ Q+ DEAR+LI+  V EITLLGQNVN W G+  DG+     DLLY L+++ 
Sbjct: 188 RGAEISRSVEQITDEARQLIEADVKEITLLGQNVNGWHGQSTDGKTWRLGDLLYHLAKLD 247

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           GL RLRYTTSHPRDM + LI AH +LD+LMPYLHLPVQSGSDRILK+MNR+H A +Y  +
Sbjct: 248 GLKRLRYTTSHPRDMDESLIAAHRNLDILMPYLHLPVQSGSDRILKAMNRQHKAIDYLNL 307

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           I++IR+ RPDIA S DFIVGFPGETDDDF  T+ L++++GY+ A+SFKYSPR GT G+ M
Sbjct: 308 IEKIRTARPDIAFSGDFIVGFPGETDDDFEETIKLIEQVGYSSAYSFKYSPRPGTLGATM 367

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSV 438
             QVDE VK +RL  LQ  L +QQ  F  + +GQ  +VLIEK G+  G++VGRSPWL  V
Sbjct: 368 KNQVDEKVKNDRLQRLQALLLDQQHRFLRSKIGQTTDVLIEKDGRHPGQIVGRSPWLLPV 427

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGE 466
           V+++    IG ++ ++IT+   ++  GE
Sbjct: 428 VVDT-QAPIGTVMAIQITNASSNSFVGE 454


>gi|119470866|ref|ZP_01613477.1| involved in methylthiolation of isopentenylated A37 derivatives in
           tRNA, Fe-S protein [Alteromonadales bacterium TW-7]
 gi|119446093|gb|EAW27372.1| involved in methylthiolation of isopentenylated A37 derivatives in
           tRNA, Fe-S protein [Alteromonadales bacterium TW-7]
          Length = 482

 Score =  485 bits (1250), Expect = e-135,   Method: Composition-based stats.
 Identities = 196/450 (43%), Positives = 291/450 (64%), Gaps = 13/450 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++  +K++GCQMN YDS +M ++  +  GY+      DAD+I+LNTC IREKA EKV+
Sbjct: 1   MSKKLHIKTWGCQMNEYDSQKMAELLDATNGYQLTEDATDADVILLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR + LK+    +  +L++ V GCVA  EG+ I +R+P V+V+ GPQT +RLPE+++
Sbjct: 61  HQLGRWKLLKD----DKPELIIGVGGCVASQEGDSIRQRAPFVDVIFGPQTLHRLPEMIK 116

Query: 142 RAR--FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           + +   G  VVD  +   +KF+RL        +  G +AF++I EGC K+CTFCVVPYTR
Sbjct: 117 QVQGNKGSSVVDISFPEIEKFDRLP-----EPKAEGPSAFVSIMEGCSKYCTFCVVPYTR 171

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G E+SR +  V+ E  +L + GV E+ LLGQNVNA+RG   DG+ C FSDL+  ++ I G
Sbjct: 172 GEEVSRPVDDVLLEVAQLAEQGVREVNLLGQNVNAYRGDTHDGDICYFSDLIRLIAAIDG 231

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           + R+RYTTSHP + +  +I A+ D+  L+ +LHLPVQSGSDRIL  M R HTA EY+  I
Sbjct: 232 IDRIRYTTSHPVEFTPDIIDAYADVPELVDHLHLPVQSGSDRILNLMKRGHTALEYKSTI 291

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            ++R +RP++++SSDFI+GFPGE+  DF ATM+L++ IG+  +FSF YS R GTP +++ 
Sbjct: 292 RKLRKIRPNLSMSSDFIIGFPGESKADFEATMNLINDIGFDMSFSFIYSARPGTPAADLP 351

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSV 438
           + V E  K ERL  LQ ++ +     +         +L+E   K+   +L GR+   + V
Sbjct: 352 DDVTEQEKKERLYLLQNRITQMAQHISRQMFDTEQRILVEGPSKKNPMELRGRTENNRVV 411

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468
                +  IG  + VRIT+   ++L G+L+
Sbjct: 412 NFVGPHSVIGQFVDVRITEALPNSLRGDLI 441


>gi|154706007|ref|YP_001424838.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Coxiella
           burnetii Dugway 5J108-111]
 gi|229890504|sp|A9KCP2|MIAB_COXBN RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|154355293|gb|ABS76755.1| tRNA 2-methylthioadenosine synthase [Coxiella burnetii Dugway
           5J108-111]
          Length = 439

 Score =  485 bits (1250), Expect = e-135,   Method: Composition-based stats.
 Identities = 195/446 (43%), Positives = 280/446 (62%), Gaps = 12/446 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ ++K++GCQMN YDS +M D+   S G E       AD+ +LNTC +REKA  KV+S 
Sbjct: 2   KKLYLKTHGCQMNEYDSAKMADVLKFSHGLELTEDPAVADVFLLNTCSVREKAQTKVFSE 61

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR R  K  R      +++ V GCVA  EGE IL+++P V++V GPQT +RLP+LL+  
Sbjct: 62  LGRWRPFKEKR----PHVVIGVGGCVASQEGETILKQAPFVDIVFGPQTLHRLPDLLDSV 117

Query: 144 RFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
              ++ VVD  +   +KF+RL        R  G +AF++I EGC K+CTFCVVPYTRG E
Sbjct: 118 IQKRKSVVDITFPEIEKFDRLP-----QPRAEGPSAFVSIMEGCSKYCTFCVVPYTRGEE 172

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           ISR    V+ E   L + GV EITLLGQNVN + G   DG+    + L++ L+ +  + R
Sbjct: 173 ISRPFDDVIAEVASLCEQGVREITLLGQNVNDYCGLMHDGQVADLALLIHYLAAMDNIER 232

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP   S+ LI A+ +   L  +LHLPVQSGSDRIL +M R +T  EY+  I ++
Sbjct: 233 IRFTTSHPSAFSENLIDAYAEEPKLANHLHLPVQSGSDRILAAMKRNYTVLEYKSKIRKL 292

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+VRPDI++SSDFI+GFPGETD DF ATM+L+  +G+  +FSF YSPR GTP + + + V
Sbjct: 293 RAVRPDISLSSDFIIGFPGETDADFEATMNLIHDMGFDHSFSFIYSPRPGTPAAQLPDDV 352

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRSPWLQSVVLN 441
              VK ERL  LQ ++  +    + + VG    +L+    K+   +L GR+   + V  N
Sbjct: 353 PMAVKKERLAILQNRINVKAAEISQSMVGTQQRILVTGPSKKYPDQLSGRTENNRVVNFN 412

Query: 442 SKNHNIGDIIKVRITDVKISTLYGEL 467
                IG ++ ++I + +  +L+GE+
Sbjct: 413 GDTPLIGQMVTIKIKEARPYSLWGEI 438


>gi|33151471|ref|NP_872824.1| hypothetical protein HD0226 [Haemophilus ducreyi 35000HP]
 gi|81423890|sp|Q7VP74|MIAB_HAEDU RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|33147691|gb|AAP95213.1| conserved hypothetical protein [Haemophilus ducreyi 35000HP]
          Length = 475

 Score =  485 bits (1249), Expect = e-135,   Method: Composition-based stats.
 Identities = 205/446 (45%), Positives = 298/446 (66%), Gaps = 12/446 (2%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +  + ++GCQMN YDS +M D+  S  G E  +  ++AD+++LNTC IREKA EKV+S L
Sbjct: 3   KLHITTWGCQMNEYDSSKMADLLNSTHGLELTDKPEEADILLLNTCSIREKAQEKVFSQL 62

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR +N K    K+  DL++ V GCVA  EGE I  R+P V++V GPQT +RLPE++ + R
Sbjct: 63  GRWKNWK----KDKPDLIIGVGGCVASQEGEHIRERAPFVDIVFGPQTLHRLPEMINQIR 118

Query: 145 FGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            G R VVD  +   +KF+RL        +  G TAF++I EGC+K+C+FCVVPYTRG E+
Sbjct: 119 SGDRAVVDISFPEIEKFDRLP-----EPKAEGPTAFVSIMEGCNKYCSFCVVPYTRGEEV 173

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR +  V+ E  +L + GV E+ LLGQNVNA+RG+  DG  CTF++LL  ++ I G+ RL
Sbjct: 174 SRPVDDVLFEIAQLAEQGVREVNLLGQNVNAYRGETFDGGICTFAELLRLVAAIDGIDRL 233

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           RYTTSHP + +D +I+ + D   L+ +LHLP+QSG+DR+L  M R HTA EY+ II ++R
Sbjct: 234 RYTTSHPIEFTDDIIEVYRDTPELVSFLHLPIQSGADRVLTMMKRNHTALEYKAIIRKLR 293

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           +VRP+I ISSDFIVGFPGET +DF  TM +++++ +  +FSF YS R GTP S++ + V 
Sbjct: 294 AVRPNIQISSDFIVGFPGETAEDFEQTMKIIEQVNFDMSFSFIYSARPGTPASDLPDDVS 353

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNS 442
           EN K +RL  LQ+++  Q + F+   +G    +L+E   K+   +L GR+   + V    
Sbjct: 354 ENEKKDRLAHLQQRINHQAMQFSRLMLGTEQRILVEGPSKKDIMELTGRTETNRVVNFIG 413

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
             + IG  + ++ITDV  ++L GE++
Sbjct: 414 TPNMIGKFVDIKITDVYSNSLRGEVI 439


>gi|332532467|ref|ZP_08408345.1| tRNA-i(6)A37 methylthiotransferase [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332038110|gb|EGI74557.1| tRNA-i(6)A37 methylthiotransferase [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 482

 Score =  485 bits (1249), Expect = e-135,   Method: Composition-based stats.
 Identities = 197/450 (43%), Positives = 289/450 (64%), Gaps = 13/450 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++  +K++GCQMN YDS +M ++  +  GY+      DAD+I+LNTC IREKA EKV+
Sbjct: 1   MSKKLHIKTWGCQMNEYDSQKMAELLDATNGYQLTEDATDADVILLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR + LK+    +  DL++ V GCVA  EG+ I +R+P V+V+ GPQT +RLPE+++
Sbjct: 61  HQLGRWKLLKD----DKPDLIIGVGGCVASQEGDSIRQRAPFVDVIFGPQTLHRLPEMIK 116

Query: 142 RAR--FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           + +   G  VVD  +   +KF+RL        +  G +AF++I EGC K+CTFCVVPYTR
Sbjct: 117 QVQGDKGSSVVDISFPEIEKFDRLP-----EPKADGPSAFVSIMEGCSKYCTFCVVPYTR 171

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G E+SR +  V+ E  +L + GV E+ LLGQNVNA+RG   DGE C FSDL+  ++ I G
Sbjct: 172 GEEVSRPVDDVLLEVAQLAEQGVREVNLLGQNVNAYRGDTHDGEICYFSDLIRLIAAIDG 231

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           + R+RYTTSHP + +  +I  + D+  L+ +LHLPVQSGSDRIL  M R HTA EY+  I
Sbjct: 232 IDRIRYTTSHPVEFTPDIIDVYADVPELVDHLHLPVQSGSDRILNLMKRGHTAIEYKSTI 291

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            ++R +RP++++SSDFI+GFPGE+ +DF ATM L+  IG+  +FSF YS R GTP +++ 
Sbjct: 292 RKLRKIRPNLSMSSDFIIGFPGESKEDFEATMKLISDIGFDMSFSFIYSARPGTPAADLP 351

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSV 438
           + V E  K ERL  LQ ++ +     +         +L+E   K+   +L GR+   + V
Sbjct: 352 DDVTEQEKKERLYLLQNRITQMAQQISRQMFDTEQRILVEGPSKKNPMELRGRTENNRVV 411

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468
                +  IG  + VRIT+   ++L G+L+
Sbjct: 412 NFVGPHTVIGQFVDVRITEALPNSLRGDLI 441


>gi|300310058|ref|YP_003774150.1| tRNA modifying 2-methylthioadenine synthetase [Herbaspirillum
           seropedicae SmR1]
 gi|300072843|gb|ADJ62242.1| tRNA modifying 2-methylthioadenine synthetase protein
           [Herbaspirillum seropedicae SmR1]
          Length = 446

 Score =  485 bits (1249), Expect = e-135,   Method: Composition-based stats.
 Identities = 202/453 (44%), Positives = 285/453 (62%), Gaps = 15/453 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++ F+K++GCQMN YDS +M D+   S G  + +  ++AD+I+LNTC IREKA EKV+
Sbjct: 1   MQKKVFIKTFGCQMNEYDSDKMADVLNASDGLIKTDRPEEADVILLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL- 140
           S LGR+R LK    K    LL+ V GCVA  EGE I++R+P V++V GPQT +RLP+++ 
Sbjct: 61  SDLGRLRALK----KNNPALLIGVGGCVASQEGEAIIKRAPFVDMVFGPQTLHRLPQMIS 116

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           ER   G+  VD  +   +KF+ L        R  G TA+++I EGC K+C++CVVPYTRG
Sbjct: 117 ERRYSGRPQVDISFPEIEKFDHLPPA-----RVEGATAYVSIMEGCSKYCSYCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR    V+ E   L D GV EI LLGQNVNA+RG   DGE   F+ L+  ++E+ G+
Sbjct: 172 EEVSRRFEDVLTEVAGLADQGVKEIMLLGQNVNAYRGVMEDGEIADFALLIEYIAELPGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+ TSHP++ S  LI  +  +  L  +L+LP Q GSDR L +M R +TA EY+ +I 
Sbjct: 232 ERIRFVTSHPKEFSQRLIDTYAKVPKLCNHLYLPAQHGSDRTLAAMKRGYTALEYKSVIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           R+R VRPDI + SDFIVGFPGET++DF A M LV  +G+  +FSF +S R GTP +N+ +
Sbjct: 292 RMRKVRPDITVQSDFIVGFPGETEEDFEALMKLVADVGFDNSFSFIFSARPGTPAANLPD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVV 439
              + VK  RL  LQ  L +     + A VG +  VL+E   K  + +L GR+   + V 
Sbjct: 352 DTPQEVKLARLQRLQAALNDNAARISAAQVGTVQRVLVEGVSKRREHELQGRTESNRVVN 411

Query: 440 LNSKNH---NIGDIIKVRITDVKISTLYGELVV 469
            +   +    IG II+V IT+    +L GE+V 
Sbjct: 412 FDGGPNGQRLIGQIIEVSITEAFPFSLRGEIVT 444


>gi|33595815|ref|NP_883458.1| hypothetical protein BPP1141 [Bordetella parapertussis 12822]
 gi|81429531|sp|Q7WB66|MIAB_BORPA RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|33565894|emb|CAE36442.1| conserved hypothetical protein [Bordetella parapertussis]
          Length = 475

 Score =  485 bits (1249), Expect = e-135,   Method: Composition-based stats.
 Identities = 195/446 (43%), Positives = 292/446 (65%), Gaps = 13/446 (2%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + +++++GCQMN YDS +M D+  + QG E  ++ +DAD+I+ NTC +REKA EKV+S L
Sbjct: 28  KLYIRTFGCQMNEYDSDKMADVLRADQGLELTDNPEDADVILFNTCSVREKAQEKVFSDL 87

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR+++LK    K+  +L++ V GCVA  EGE I++R+P V+VV GPQT +RLP+L++R R
Sbjct: 88  GRVQHLK----KQNPNLVIGVGGCVASQEGEAIVKRAPYVDVVFGPQTLHRLPDLIKRRR 143

Query: 145 -FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             G   VD  +   +KF+ L        R  G TAF++I EGC K+C+FCVVPYTRG E+
Sbjct: 144 AQGVSQVDISFPEIEKFDALPP-----PRVDGATAFVSIMEGCSKYCSFCVVPYTRGEEV 198

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVR 262
           SR    V+ E   L D GV E+TLLGQNVNA+RG   D GE   F+ LL  + EI G+ R
Sbjct: 199 SRPFDDVLLEIADLADQGVKEVTLLGQNVNAYRGAMGDSGEIADFAMLLEYVHEIPGIER 258

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +RYTTSHP++M+  ++ A+  L  L+ +LHLPVQ+GSDR+L +M R +TA E++ ++ R+
Sbjct: 259 IRYTTSHPKEMTQRMVDAYARLPKLVSFLHLPVQAGSDRVLAAMKRGYTALEFKSVVRRL 318

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+ RP + +SSDFIVGFPGET++DF+ TM L++ +G+  +FSF YS R GTP +++ +  
Sbjct: 319 RAARPSLTLSSDFIVGFPGETEEDFQKTMKLIEDVGFDTSFSFVYSRRPGTPAADLHDDT 378

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLN 441
            ++VK  RL  LQ  + +Q  +     +G    VL+E    ++  +L+GR+   + V   
Sbjct: 379 PQDVKLRRLQQLQALINQQAAAIAQGMIGTRQRVLVEGPSRRDPNELMGRTENNRIVNFP 438

Query: 442 SKNHNIGDIIKVRITDVKISTLYGEL 467
                IG ++ V +T    ++L G +
Sbjct: 439 GVPRLIGHMVDVVVTHAHTNSLRGRV 464


>gi|291616694|ref|YP_003519436.1| YleA [Pantoea ananatis LMG 20103]
 gi|291151724|gb|ADD76308.1| YleA [Pantoea ananatis LMG 20103]
 gi|327393120|dbj|BAK10542.1| tRNA-I(6)A37-MiaB YleA [Pantoea ananatis AJ13355]
          Length = 478

 Score =  485 bits (1249), Expect = e-135,   Method: Composition-based stats.
 Identities = 200/452 (44%), Positives = 288/452 (63%), Gaps = 12/452 (2%)

Query: 20  QCIVPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAE 78
              + ++  +K++GCQMN YDS +M D+  S  GY      ++AD+++LNTC IREKA E
Sbjct: 2   ASSMTKKLHIKTWGCQMNEYDSSKMSDLLNSTHGYTLTEEAEEADILLLNTCSIREKAQE 61

Query: 79  KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPE 138
           KV+  LGR + LK        DL++ V GCVA  EG+ I +R+P V++V GPQT +RLPE
Sbjct: 62  KVFHQLGRWKKLKER----NPDLIIGVGGCVASQEGDHIRQRAPCVDIVFGPQTLHRLPE 117

Query: 139 LLERARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197
           ++   R  K  VVD  +   +KF+RL        R  G TAF++I EGC+K+CTFCVVPY
Sbjct: 118 MINTVRGSKSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTFCVVPY 172

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257
           TRG E+SR    ++ E  +L   GV E+ LLGQNVNA+RG   DG+ CTF++LL  ++ I
Sbjct: 173 TRGEEVSRPSDDILLEIAQLAAQGVREVNLLGQNVNAYRGATFDGDVCTFAELLRLVAAI 232

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
            G+ R+R+TTSHP + +D +I+ + D   L+ +LHLPVQSG+DRIL  M R HTA EY+ 
Sbjct: 233 DGIDRIRFTTSHPIEFTDDIIEVYRDTPELVSFLHLPVQSGADRILTLMKRAHTALEYKA 292

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
           II ++R+ RPDI ISSDFI+GFPGET  DF  TM L+  I +  ++SF YS R GTP ++
Sbjct: 293 IIRKLRAARPDIEISSDFIIGFPGETQQDFEQTMKLIGDINFDMSYSFIYSARPGTPAAD 352

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQ 436
           + + V E+ K +RL  LQ+++ +Q ++ +   +G +  +L+E   ++   +L GR+   +
Sbjct: 353 LPDDVSEDEKKQRLYILQERINQQAMAISRRMMGSVQRILVEGISRKNVMELTGRTENNR 412

Query: 437 SVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            V        IG    V I DV  ++L G+LV
Sbjct: 413 VVNFEGPVEMIGKFADVEIVDVYTNSLRGKLV 444


>gi|332993746|gb|AEF03801.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Alteromonas
           sp. SN2]
          Length = 477

 Score =  485 bits (1249), Expect = e-135,   Method: Composition-based stats.
 Identities = 203/449 (45%), Positives = 295/449 (65%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++ ++K++GCQMN YDS +M D+  S  GY    + ++AD+I+LNTC IREKA EKV+
Sbjct: 1   MTKKLYIKTWGCQMNEYDSEKMADLLDSTHGYSAAETAEEADVILLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR +NLK     +  +L++ V GCVA  EG  I +R+P V++V GPQT +RLPE++ 
Sbjct: 61  HQLGRWKNLKQ----DKPELIIGVGGCVASQEGSVIRQRAPYVDLVFGPQTLHRLPEMIN 116

Query: 142 RARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           + + G++ V+D  +   +KF+RL        R  G TAF++I EGC K+CTFCVVPYTRG
Sbjct: 117 QLKGGEKSVIDVSFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCSKYCTFCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR +  V+ E  +L   GV E+ LLGQNVNA+RG+  DG  C F++LL  ++ I G+
Sbjct: 172 EEVSRPVDDVLLEIAQLAGQGVREVNLLGQNVNAFRGENHDGTVCRFAELLELVAAIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+RYTTSHP + +D +I  +  +  L+ +LHLPVQSGSDRIL  M R HTA EY+  I 
Sbjct: 232 DRIRYTTSHPVEFTDDIIDVYATIPELVDHLHLPVQSGSDRILNLMKRGHTAIEYKSKIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R VRP+I++SSDFI+GFPGETD DF ATMDL+  I Y  +FSF YS R GTP ++ ++
Sbjct: 292 KLRKVRPNISMSSDFIIGFPGETDADFEATMDLIQAIDYDLSFSFIYSARPGTPAADAVD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439
            V E+ K +RL  LQ+++ +Q +      VG    +L+E   K+   +L GR+   + V 
Sbjct: 352 DVTEDAKKQRLYLLQQRINQQALRIARNMVGTEQRILVEGPSKKNPMELSGRTENNRVVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG+ + V +TDV  ++L G+++
Sbjct: 412 FEGTPDMIGEFVDVEVTDVFSNSLRGDVI 440


>gi|300722332|ref|YP_003711617.1| hypothetical protein XNC1_1347 [Xenorhabdus nematophila ATCC 19061]
 gi|297628834|emb|CBJ89412.1| involved in methylthiolation of isopentenylated A37 derivatives in
           tRNA, Fe-S protein [Xenorhabdus nematophila ATCC 19061]
          Length = 476

 Score =  485 bits (1249), Expect = e-135,   Method: Composition-based stats.
 Identities = 198/447 (44%), Positives = 291/447 (65%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ ++K++GCQMN YDS +M D+  +  GY+  +  ++AD+++LNTC IREKA EKV+  
Sbjct: 5   KKLYIKTWGCQMNEYDSSKMADLLETTHGYQLTDVAEEADILLLNTCSIREKAQEKVFHQ 64

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK+       D+++ V GCVA  EG+ I +R+P V+++ GPQT +RLPE++   
Sbjct: 65  LGRWKGLKDK----NPDVIIGVGGCVASQEGDFIRQRAPSVDIIFGPQTLHRLPEMINHV 120

Query: 144 R-FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           +     +VD  +   +KF+RL        R  G +AF++I EGC+K+CTFCVVPYTRG E
Sbjct: 121 KGTHSPIVDISFPEIEKFDRLP-----EPRAEGPSAFVSIMEGCNKYCTFCVVPYTRGEE 175

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR    ++ E  +L   GV E+ LLGQNVNA+RG   DG+ CTF++LL  ++ I G+ R
Sbjct: 176 VSRPCDDILFEIAQLAAQGVREVNLLGQNVNAYRGATFDGDICTFAELLRLVAAIDGIDR 235

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP + +D +I  + D   L+ YLHLPVQSGSDRIL  M R HTA EY+ II R+
Sbjct: 236 IRFTTSHPIEFTDDIIAVYEDTPELVSYLHLPVQSGSDRILTLMKRAHTALEYKGIIRRL 295

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R  RPDI ISSDFI+GFPGET DDF  TM L+  + +  +FSF YS R GTP +++ + V
Sbjct: 296 RKARPDILISSDFIIGFPGETQDDFEKTMKLIADVNFDMSFSFIYSARPGTPAADLPDDV 355

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441
           +E  K +RL  LQ+++ +Q +SF+ A +G    +L+E   ++   +L GR+   + V   
Sbjct: 356 NEEEKKQRLYLLQQRINQQAMSFSRAMIGNTQRILVEGPSRKNIMELSGRTENNRVVNFE 415

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                IG  + V I DV  ++L G+++
Sbjct: 416 GTPDMIGKFVDVEIVDVYANSLRGKVI 442


>gi|268590389|ref|ZP_06124610.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Providencia rettgeri DSM
           1131]
 gi|291314302|gb|EFE54755.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Providencia rettgeri DSM
           1131]
          Length = 476

 Score =  485 bits (1248), Expect = e-135,   Method: Composition-based stats.
 Identities = 194/447 (43%), Positives = 291/447 (65%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ ++K++GCQMN YDS +M  +  +  GY+     ++ADL++LNTC IREKA EKV+  
Sbjct: 5   KKLYIKTWGCQMNEYDSSKMVSLLENTHGYQLTEVAEEADLLLLNTCSIREKAQEKVFHQ 64

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR +  K+       D+++ V GCVA  EG+ I +R+P V++V GPQT +RLPE++ + 
Sbjct: 65  LGRWKFFKDK----NPDIIIGVGGCVASQEGDFIRQRAPSVDIVFGPQTLHRLPEMINQV 120

Query: 144 RFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           +  +  V+D  +   +KF+RL        R  G TAF++I EGC+K+CTFCVVPYTRG E
Sbjct: 121 QGTRSPVIDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTFCVVPYTRGEE 175

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR    ++ E  +L   GV E+ LLGQNVNA+RG+  DGE C+F++LL  ++ I G+ R
Sbjct: 176 VSRPCDDILFEIAQLAAQGVREVNLLGQNVNAYRGETFDGEICSFAELLRLVAAIDGIDR 235

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP + +D +I+ + D   L+ +LHLPVQSGSDR+L  M R HTA EY+ II ++
Sbjct: 236 VRFTTSHPIEFTDDIIEVYRDTPELVSFLHLPVQSGSDRVLTMMKRAHTALEYKAIIRKL 295

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R  RP I ISSDFIVGFPGET +DF  TM L+  + +  ++SF YS R GTP +++ + V
Sbjct: 296 REARPGILISSDFIVGFPGETTEDFEKTMKLIADVNFDMSYSFVYSARPGTPAADLPDDV 355

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441
            E+ K +RL  LQ+++ +Q +SF+   VG +  +L+E   ++   +L GR+   + V   
Sbjct: 356 TEDEKKQRLYLLQQRINQQALSFSRQMVGTVQRILVEGTSRKNVMELSGRTENNRVVNFE 415

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                IG  + V I DV  ++L G+++
Sbjct: 416 GTPDMIGKFVDVEIVDVYTNSLRGKVI 442


>gi|146279874|ref|YP_001170032.1| hypothetical protein Rsph17025_3872 [Rhodobacter sphaeroides ATCC
           17025]
 gi|229890629|sp|A4WZB3|MIAB_RHOS5 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|145558115|gb|ABP72727.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Rhodobacter sphaeroides
           ATCC 17025]
          Length = 436

 Score =  485 bits (1248), Expect = e-135,   Method: Composition-based stats.
 Identities = 245/444 (55%), Positives = 314/444 (70%), Gaps = 14/444 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F+K+YGCQMNVYDS RM +   ++GY      ++AD+++LNTCHIREKAAEKVYS L
Sbjct: 5   RKLFIKTYGCQMNVYDSERMAEALGAKGYVLTEVAEEADMVLLNTCHIREKAAEKVYSDL 64

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR+R LK +R     DL + VAGCVAQAEGEEILRR P+V++VVGPQ+Y+RLP++LER  
Sbjct: 65  GRLRPLKVAR----PDLKIGVAGCVAQAEGEEILRRMPLVDLVVGPQSYHRLPDMLERTE 120

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G RV+DTD+  EDKFE L          RG TAFLT+QEGCDKFC FCVVPYTRG E+S
Sbjct: 121 GGARVIDTDFPEEDKFEHLP----ERKALRGPTAFLTVQEGCDKFCAFCVVPYTRGAEVS 176

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R  ++++ EAR L++ GV EITLLGQNVNAW   G          L+  L+ I GL RLR
Sbjct: 177 RPFARLMAEARALVEKGVREITLLGQNVNAWSNDG-----RGLGGLIRELARIDGLERLR 231

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           YTTSHP DM+D LI+AHG    LMPYLHLPVQSGSDRILK+MNR+H A +Y ++++RIR+
Sbjct: 232 YTTSHPNDMADDLIEAHGQEPKLMPYLHLPVQSGSDRILKAMNRKHAAEQYLRLVERIRA 291

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
            RPDI ++SDFIVGFPGETD DF AT+ L+  +G+  AFSFKYS R GTP +   E +  
Sbjct: 292 ARPDILLTSDFIVGFPGETDADFEATLALIRAVGFGSAFSFKYSARPGTPAAEKPE-LPA 350

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
            +   RL  LQ  L EQQ +   A VG+ + VL EK G+  G++VG+S +L +V +    
Sbjct: 351 ELCDARLQTLQALLGEQQRAAQAAMVGRELGVLYEKAGRLPGQMVGKSDYLHAVHVEDPG 410

Query: 445 HNIGDIIKVRITDVKISTLYGELV 468
              GD+++VRIT    ++L GE +
Sbjct: 411 ARPGDLVRVRITASGPNSLAGERI 434


>gi|229891223|sp|B2SW86|MIAB_XANOP RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
          Length = 484

 Score =  485 bits (1248), Expect = e-135,   Method: Composition-based stats.
 Identities = 200/462 (43%), Positives = 292/462 (63%), Gaps = 17/462 (3%)

Query: 14  VSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHI 72
           V++     +V  + ++K++GCQMN YDS +M D+  + +G E  ++ ++AD++++NTC I
Sbjct: 25  VARPSAPAVVRGKLYIKTHGCQMNEYDSAKMADVLAASEGLELTDNPEEADVVLVNTCSI 84

Query: 73  REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT 132
           REKA EKV+S LGR + LK      G  +++ V GCVA  EGE I++R+P V++V GPQT
Sbjct: 85  REKAQEKVFSQLGRWKALKAG----GKPVIIGVGGCVASQEGEAIVKRAPYVDLVFGPQT 140

Query: 133 YYRLPELL-ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCT 191
            +RLPEL+  R   GK  VD  +   +KF+RL        R  G +AF++I EGC K+C+
Sbjct: 141 LHRLPELIRARRESGKSQVDISFPEIEKFDRLP-----EPRAEGPSAFVSIMEGCSKYCS 195

Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-----GLDGEKCT 246
           FCVVPYTRG E+SR    V+ E  +L   GV EI LLGQNVNA+RG      G   +   
Sbjct: 196 FCVVPYTRGEEVSRPFEDVLVEVAQLAAQGVREINLLGQNVNAYRGAYGADAGDPAQYAD 255

Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306
              L+ ++++I+G+ R+R+TTSHP + SD L+ A+ D+  L   LHLPVQ+GSDRIL +M
Sbjct: 256 LGLLIRTIAQIEGIGRIRFTTSHPLEFSDSLVDAYRDVPQLANCLHLPVQAGSDRILSAM 315

Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
            R +TA E++  I ++R+VRPDI+ISSDFIVGFPGET+ DF  TM L++ +G+ Q+FSF 
Sbjct: 316 KRGYTALEFKSRIRKLRAVRPDISISSDFIVGFPGETEADFEKTMKLIEDVGFDQSFSFV 375

Query: 367 YSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEK 425
           YS R GTP S++ +   E VK  RL  LQ  +     S + + VG +  VL+E    ++ 
Sbjct: 376 YSRRPGTPASDLQDDTPETVKQARLARLQAHISAHAASISQSMVGSVQRVLVEGPSRRDP 435

Query: 426 GKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
            +L G+S  ++ V        IG  + V IT+   ++L G +
Sbjct: 436 NELTGKSENMRPVNFPGNPRLIGQFVDVLITEAMSNSLRGRI 477


>gi|289665632|ref|ZP_06487213.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Xanthomonas
           campestris pv. vasculorum NCPPB702]
          Length = 484

 Score =  485 bits (1248), Expect = e-135,   Method: Composition-based stats.
 Identities = 202/462 (43%), Positives = 292/462 (63%), Gaps = 17/462 (3%)

Query: 14  VSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHI 72
           V++     +V  + ++K++GCQMN YDS +M D+  + +G E  ++ +DAD++++NTC I
Sbjct: 25  VARPSAPDVVRGKLYIKTHGCQMNEYDSAKMADVLAASEGLELTDNPEDADVVLVNTCSI 84

Query: 73  REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT 132
           REKA EKV+S LGR + LK      G  +++ V GCVA  EGE I++R+P V++V GPQT
Sbjct: 85  REKAQEKVFSQLGRWKALKAG----GKPVIIGVGGCVASQEGEAIVKRAPYVDLVFGPQT 140

Query: 133 YYRLPELL-ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCT 191
            +RLPEL+  R   GK  VD  +   +KF+RL        R  G +AF++I EGC K+C+
Sbjct: 141 LHRLPELIRARRESGKSQVDISFPEIEKFDRLP-----EPRADGPSAFVSIMEGCSKYCS 195

Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-----GLDGEKCT 246
           FCVVPYTRG E+SR    V+ E  +L   GV EI LLGQNVNA+RG      G   +   
Sbjct: 196 FCVVPYTRGEEVSRPFEDVLVEVAQLAAQGVREINLLGQNVNAYRGGYGADAGDAAQYAD 255

Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306
              L+ ++++I G+ R+R+TTSHP + SD L+ A+ D+  L  YLHLPVQ+GSDRIL +M
Sbjct: 256 LGLLIRTIAQIDGIGRIRFTTSHPLEFSDSLVDAYRDVPQLANYLHLPVQAGSDRILSAM 315

Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
            R +TA E++  I ++R+VRPDI+ISSDFIVGFPGET+ DF  TM L++ +G+ Q+FSF 
Sbjct: 316 KRGYTALEFKSKIRKLRAVRPDISISSDFIVGFPGETEADFEKTMKLIEDVGFDQSFSFV 375

Query: 367 YSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEK 425
           YS R GTP S++ +   E VK  RL  LQ  +     S + + VG +  VL+E    ++ 
Sbjct: 376 YSRRPGTPASDLQDDTPEAVKQARLARLQAHISAHAASISQSMVGSVQRVLVEGPSRRDP 435

Query: 426 GKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
            +L G+S  ++ V        IG  + V IT+   ++L G +
Sbjct: 436 NELTGKSENMRPVNFPGNPRLIGQFVDVLITEAMSNSLRGRI 477


>gi|294637486|ref|ZP_06715772.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Edwardsiella tarda ATCC
           23685]
 gi|291089318|gb|EFE21879.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Edwardsiella tarda ATCC
           23685]
          Length = 474

 Score =  485 bits (1248), Expect = e-135,   Method: Composition-based stats.
 Identities = 203/449 (45%), Positives = 289/449 (64%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++  +K++GCQMN YDS +M D+  S  G E  ++ +DAD+++LNTC IREKA EKV+
Sbjct: 1   MTKKLHIKTWGCQMNEYDSSKMADLLGSTHGLELTDNAEDADVLLLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR + LK +      DL++ V GCVA  EGE I  R+  V+++ GPQT +RLPE++E
Sbjct: 61  HQLGRWKMLKEA----KPDLIIGVGGCVASQEGEHIRERASFVDIIFGPQTLHRLPEMIE 116

Query: 142 RARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           RAR     VVD  +   +KF+RL        R  G TAF++I EGC+K+CT+CVVPYTRG
Sbjct: 117 RARGSHSPVVDVSFPEIEKFDRLP-----EPRAEGATAFVSIMEGCNKYCTYCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR    V+ E  +L   GV E+ LLGQNVNA+RG   DG  CTF++LL  ++ I G+
Sbjct: 172 AEVSRPCDDVLFEIAQLAAQGVREVNLLGQNVNAYRGATFDGGICTFAELLRLVAAIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+TTSHP + SD +I  + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II 
Sbjct: 232 DRIRFTTSHPIEFSDDIIAVYEDTPELVSFLHLPVQSGSDRILNLMKRTHTALEYKAIIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R  RPDI ISSDFIVGFPGET  DF  TM L+  + +  ++SF +S R GTP ++M++
Sbjct: 292 KLRKARPDIQISSDFIVGFPGETQQDFEQTMQLIADVDFDMSYSFIFSARPGTPAADMVD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439
            V E  K +RL  LQ+++ +Q + ++    G +  +L+E   ++   +L GR+   + V 
Sbjct: 352 DVPEEEKKQRLYILQERISQQAMRYSRRMQGTVQRILVEGTSRKNVMELSGRTENNRVVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
              +   IG  + V IT+V  ++L G +V
Sbjct: 412 FAGQPEMIGRFVDVEITEVLPNSLRGVVV 440


>gi|317047312|ref|YP_004114960.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Pantoea sp. At-9b]
 gi|316948929|gb|ADU68404.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Pantoea sp. At-9b]
          Length = 474

 Score =  485 bits (1248), Expect = e-135,   Method: Composition-based stats.
 Identities = 198/449 (44%), Positives = 283/449 (63%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++  +K++GCQMN YDS +M D+  S  GY      ++AD+++LNTC IREKA EKV+
Sbjct: 1   MTKKLHIKTWGCQMNEYDSSKMADLLNSTHGYTLTEEAEEADILLLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR + LK        DL++ V GCVA  EG+ I +R+P V++V GPQT +RLPE++ 
Sbjct: 61  HQLGRWKKLKER----NPDLIIGVGGCVASQEGDHIRQRAPCVDIVFGPQTLHRLPEMIN 116

Query: 142 RAR-FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
             R     +VD  +   +KF+RL        R  G TAF++I EGC+K+CTFCVVPYTRG
Sbjct: 117 TVRGSNSPIVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTFCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR    ++ E  +L   GV E+ LLGQNVNA+RG   DG+ CTF++LL  ++ I G+
Sbjct: 172 EEVSRPSDDILLEIAQLAAQGVREVNLLGQNVNAYRGATFDGDFCTFAELLRLVAAIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+TTSHP + +D +I  + D   L+ +LHLPVQSG+DRIL  M R HTA EY+ II 
Sbjct: 232 DRIRFTTSHPIEFTDDIIDVYRDTPELVSFLHLPVQSGADRILTLMKRAHTALEYKAIIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R  RPDI ISSDFI+GFPGET  DF  TM L+  I +  +FSF YS R GTP +++ +
Sbjct: 292 KLRVARPDIEISSDFIIGFPGETQQDFEQTMKLIGDINFDMSFSFIYSARPGTPAADLPD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439
            V E  K +RL  LQ ++ +Q +  +   +G +  +L+E   ++   +L GR+   + V 
Sbjct: 352 DVPEEEKKQRLYILQDRINQQAMGISRRMLGTVQRILVEGTSRKNVMELSGRTANNRVVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG  + V I DV  ++L G++V
Sbjct: 412 FEGNVSMIGKFVDVEIVDVYTNSLRGKVV 440


>gi|330445221|ref|ZP_08308873.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
 gi|328489412|dbj|GAA03370.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
          Length = 474

 Score =  485 bits (1248), Expect = e-135,   Method: Composition-based stats.
 Identities = 200/449 (44%), Positives = 289/449 (64%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++  +K++GCQMN YDS +M D+   + G+E     ++AD+++LNTC IREKA EKV+
Sbjct: 1   MAKKLLIKTWGCQMNEYDSSKMADLLNAANGFELTEIPEEADVLLLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR + LK+       DL++ V GCVA  EG+ I +R+P V+V+ GPQT +RLPE+++
Sbjct: 61  HQLGRWKTLKDK----KPDLVIGVGGCVATQEGDSIRQRAPYVDVIFGPQTLHRLPEMIK 116

Query: 142 RARFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           +++     V+D  +   +KF+ L        R  G TAF++I EGC K+CT+CVVPYTRG
Sbjct: 117 QSQSDDAPVMDISFPEIEKFDSLP-----EPRAEGATAFVSIMEGCSKYCTYCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR L  V+ E  +L + GV E+ LLGQNVNA+RG   DGE  +F++LL  ++ I G+
Sbjct: 172 EEVSRPLDDVLFEIAQLAEQGVREVNLLGQNVNAYRGVMHDGEIASFAELLRLVAAIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+RYTTSHP + +D +I+ + D   L+ +LHLPVQSGSDRIL  M R HTA EY+  I 
Sbjct: 232 DRIRYTTSHPIEFTDDIIEVYKDTPELVSFLHLPVQSGSDRILTMMKRPHTAIEYKSKIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R  RPDI ISSDFIV FPGETD DF+ TM L+  + +  +FSF +S R GTP ++   
Sbjct: 292 KLRQARPDITISSDFIVAFPGETDQDFQDTMKLIRDVDFDMSFSFIFSARPGTPAADYPC 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439
            + E VK ERL  LQ+++  Q + ++   +G    +L+E   K+   +L GR+   + V 
Sbjct: 352 DLTEEVKKERLYELQQQINTQAMRYSRQMLGTEQRILVEGPSKKNVMELRGRTENNRVVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG  + V+ITDV  ++L GELV
Sbjct: 412 FEGSADLIGQFVDVKITDVFTNSLRGELV 440


>gi|294625996|ref|ZP_06704606.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|294664199|ref|ZP_06729579.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292599666|gb|EFF43793.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292606024|gb|EFF49295.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 484

 Score =  485 bits (1248), Expect = e-135,   Method: Composition-based stats.
 Identities = 201/462 (43%), Positives = 293/462 (63%), Gaps = 17/462 (3%)

Query: 14  VSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHI 72
           V++     +V  + ++K++GCQMN YDS +M D+  + +G E  ++ ++AD++++NTC I
Sbjct: 25  VARPSAPAVVRGKLYIKTHGCQMNEYDSAKMADVLAASEGLELTDNPEEADVVLVNTCSI 84

Query: 73  REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT 132
           REKA EKV+S LGR + LK      G  +++ V GCVA  EGE I++R+P V++V GPQT
Sbjct: 85  REKAQEKVFSQLGRWKALKAG----GKPVIIGVGGCVASQEGEAIVKRAPYVDLVFGPQT 140

Query: 133 YYRLPELL-ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCT 191
            +RLPEL+  R   GK  VD  +   +KF+RL        R  G +AF++I EGC K+C+
Sbjct: 141 LHRLPELIRARRESGKSQVDISFPEIEKFDRLP-----EPRAEGPSAFVSIMEGCSKYCS 195

Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-----GLDGEKCT 246
           FCVVPYTRG E+SR    V+ E  +L   GV EI LLGQNVNA+RG      G   +   
Sbjct: 196 FCVVPYTRGEEVSRPFEDVLVEVAQLAAQGVREINLLGQNVNAYRGAYGADAGDTAQYAD 255

Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306
              L+ ++++I+G+ R+R+TTSHP + SD L+ A+ D+  L  YLHLPVQ+GSDRIL +M
Sbjct: 256 LGLLIRTIAQIEGIGRIRFTTSHPLEFSDSLVDAYRDVPQLANYLHLPVQAGSDRILSAM 315

Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
            R +TA E++  I ++R+VRPDI+ISSDFIVGFPGET+ DF  TM L++ +G+ Q+FSF 
Sbjct: 316 KRGYTALEFKSKIRKLRAVRPDISISSDFIVGFPGETEADFEKTMKLIEDVGFDQSFSFV 375

Query: 367 YSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEK 425
           YS R GTP S++ +   E VK  RL  LQ  +     S + + VG +  VL+E    ++ 
Sbjct: 376 YSRRPGTPASDLQDDTPEAVKQGRLARLQAHINAHAASISQSMVGSVQRVLVEGPSRRDP 435

Query: 426 GKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
            +L G+S  ++ V        IG  + V IT+   ++L G +
Sbjct: 436 NELTGKSENMRPVNFPGNPRLIGQFVDVLITEAMSNSLRGRI 477


>gi|238752614|ref|ZP_04614087.1| hypothetical protein yrohd0001_990 [Yersinia rohdei ATCC 43380]
 gi|238709205|gb|EEQ01450.1| hypothetical protein yrohd0001_990 [Yersinia rohdei ATCC 43380]
          Length = 478

 Score =  484 bits (1247), Expect = e-135,   Method: Composition-based stats.
 Identities = 200/449 (44%), Positives = 285/449 (63%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++  +K++GCQMN YDS +M D+  S  GY+   + ++ADL++LNTC IREKA EKV+
Sbjct: 5   MTKKLHIKTWGCQMNEYDSSKMADLLASTHGYQLTENPEEADLLLLNTCSIREKAQEKVF 64

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S LG  + LK        +L++ V GCVA  EGE + +R+P V+VV GPQT +RLPE++ 
Sbjct: 65  SLLGHWKLLKEK----NPELIIGVGGCVASQEGEHLRQRAPCVDVVFGPQTLHRLPEMIN 120

Query: 142 RARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
             +     +VD  +   +KF+RL        R  G TAF++I EGC+K+CTFCVVPYTRG
Sbjct: 121 HVQGSHSPIVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTFCVVPYTRG 175

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR    ++ E  +L   GV E+ LLGQNVNA+RG   DG+ C+F++LL  ++ I G+
Sbjct: 176 EEVSRPSDDILFEIAQLAAQGVREVNLLGQNVNAYRGATYDGDICSFAELLRLVAAIDGI 235

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+TTSHP + +D +I  + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II 
Sbjct: 236 DRVRFTTSHPIEFTDDIIDVYRDTPELVSFLHLPVQSGSDRILTMMKRAHTALEYKAIIR 295

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R  RPDI ISSDFI+GFPGET  DF  TM LV  I +  ++SF YS R GTP +++ +
Sbjct: 296 KLRQARPDIQISSDFIIGFPGETQLDFEQTMKLVADIRFDTSYSFIYSSRPGTPAADLPD 355

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439
            V E  K +RL  LQ+++ +Q +  +   VG +  +L+E   ++   +L GR+   + V 
Sbjct: 356 DVSEEEKKQRLHILQQRITQQAMEISREMVGTVQRILVEGTSRKNVMELAGRTENNRVVN 415

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG  + V I DV  S+L G L+
Sbjct: 416 FEGMPELIGKFVDVEIIDVHASSLRGVLL 444


>gi|289165670|ref|YP_003455808.1| isopentenyl-adenosine A37 tRNA methylthiolase [Legionella
           longbeachae NSW150]
 gi|288858843|emb|CBJ12757.1| isopentenyl-adenosine A37 tRNA methylthiolase [Legionella
           longbeachae NSW150]
          Length = 447

 Score =  484 bits (1247), Expect = e-134,   Method: Composition-based stats.
 Identities = 204/450 (45%), Positives = 288/450 (64%), Gaps = 12/450 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMED-MFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++ ++K+ GCQMN YDS +M D +  S G  + + ++DAD+I+LNTC IREKA EKV+
Sbjct: 1   MAKKLYIKTNGCQMNEYDSSKMADVLLQSHGLVKTDQVEDADVILLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL- 140
           S LG+ R  K         +++ V GCVA  EG +I++R+P V++V GPQT +RLPELL 
Sbjct: 61  SQLGQWREYKAK----NPHVVIGVGGCVASQEGADIIKRAPFVDLVFGPQTLHRLPELLN 116

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           ER    K VVD  +   +KF+ L        R  G TAF++I EGC K+C+FCVVPYTRG
Sbjct: 117 ERMEKKKPVVDISFPEIEKFDHLP-----APRAEGPTAFVSIMEGCSKYCSFCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            EISR    V+ E  +L   GV EI LLGQNVN +RG   +G+    + L++ L+ I+G+
Sbjct: 172 TEISRPFDDVLAECYQLATQGVREINLLGQNVNDYRGTMENGDIADLALLIHYLAAIEGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+TTSHP   SD LI A+ ++  L  +LHLPVQSGSDRIL  M R +TA E++  I 
Sbjct: 232 DRIRFTTSHPLAFSDNLINAYAEVPELANHLHLPVQSGSDRILGLMKRGYTALEFKSKIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R +RPDI +S+D IVGFPGETD DF+ TMDLV +IG+  +FSF YSPR GTP +N+ +
Sbjct: 292 KLRKIRPDIRLSTDIIVGFPGETDKDFQDTMDLVHEIGFDTSFSFIYSPRPGTPAANLPD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLVGRSPWLQSVV 439
                VK +RL  LQ +L  Q   ++ + VG I ++L+  H K+   +L GR+   + V 
Sbjct: 352 DTPLEVKKQRLQILQNRLLLQASRYSQSMVGTIQKILVTGHSKKNSQQLSGRTECNRVVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELVV 469
            +   H IG  +  +I+D   ++L G L+ 
Sbjct: 412 FDGPAHLIGQFVDTQISDALPNSLRGRLIA 441


>gi|110681057|ref|YP_684064.1| tRNA-i(6)A37 thiotransferase enzyme MiaB, putative [Roseobacter
           denitrificans OCh 114]
 gi|123361551|sp|Q161G5|MIAB_ROSDO RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|109457173|gb|ABG33378.1| tRNA-i(6)A37 thiotransferase enzyme MiaB, putative [Roseobacter
           denitrificans OCh 114]
          Length = 441

 Score =  484 bits (1247), Expect = e-134,   Method: Composition-based stats.
 Identities = 243/441 (55%), Positives = 322/441 (73%), Gaps = 8/441 (1%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
            P++ F+K+YGCQMNVYDS RM +   ++GY    + +DAD+I+LNTCHIREKAAEKVYS
Sbjct: 3   APKKLFIKTYGCQMNVYDSERMSEALVAEGYVETKTAEDADMILLNTCHIREKAAEKVYS 62

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            LGR+++LK     +  DL + VAGCVAQAEGEEI+RR P V++VVGPQ+Y+RLP++  R
Sbjct: 63  ELGRLKSLKA----DNPDLKLGVAGCVAQAEGEEIMRRQPAVDLVVGPQSYHRLPQMEAR 118

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            R G + +DTD+  EDKFE L         +R  +AFLT+QEGCDKFC FCVVPYTRG E
Sbjct: 119 LREGHKALDTDFPPEDKFEELKARP---KARRAPSAFLTVQEGCDKFCAFCVVPYTRGAE 175

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR +++V+DEAR L++ GV EITLLGQNVNA+ G G DG + T + L+++L++I GL R
Sbjct: 176 VSRPVTRVLDEARDLVERGVREITLLGQNVNAYHGAGADGNEKTLAQLIWALNDIDGLER 235

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP DM D LI+AH D   LMPYLHLPVQSGSDRILK MNR+HTA  Y ++I+RI
Sbjct: 236 IRFTTSHPNDMQDDLIEAHRDCPKLMPYLHLPVQSGSDRILKRMNRKHTADSYLRLIERI 295

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R  RPDI +S DFIVGFP ET+ DF+AT+DL++ + Y  A+SFKYS R GTP +    QV
Sbjct: 296 RVGRPDILLSGDFIVGFPEETEADFQATLDLIEAVNYGYAYSFKYSTRPGTPAAERA-QV 354

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
           D     ERL  +Q  +  QQ     + VG+ + VLIEK G+ +G++VG+S +L +V ++ 
Sbjct: 355 DPVEADERLQRIQALITRQQQDIQQSMVGRDVSVLIEKPGRFEGQMVGKSEYLHAVHVDQ 414

Query: 443 KNHNIGDIIKVRITDVKISTL 463
            +  IGDI+ VRI + K ++L
Sbjct: 415 CSAQIGDILPVRIVEAKRNSL 435


>gi|326315625|ref|YP_004233297.1| RNA modification enzyme, MiaB family [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323372461|gb|ADX44730.1| RNA modification enzyme, MiaB family [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 449

 Score =  484 bits (1247), Expect = e-134,   Method: Composition-based stats.
 Identities = 204/451 (45%), Positives = 290/451 (64%), Gaps = 15/451 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++ FVK++GCQMN YDS +M D+   +QGYE   + ++ADLI+ NTC +REKA EKV+
Sbjct: 1   MAKKVFVKTFGCQMNEYDSDKMVDVLHAAQGYEPTQNAEEADLILFNTCSVREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL- 140
           S LGR ++LK   +K      + V GCVA  EG+EI++R+P V+VV GPQT +RLPELL 
Sbjct: 61  SDLGRFKHLKARGVK------IGVGGCVASQEGDEIIKRAPYVDVVFGPQTLHRLPELLA 114

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           +R    +  VD  +   +KF+ L        R  G +AF++I EGC K+C++CVVPYTRG
Sbjct: 115 QREALARPQVDISFPEIEKFDHLPPA-----RVEGASAFVSIMEGCSKYCSYCVVPYTRG 169

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-GLDGEKCTFSDLLYSLSEIKG 259
            E+SR    V+ E   L D GV E+TLLGQNVNA+ GK G   E   F+ LL  +++I G
Sbjct: 170 EEVSRPFDDVLVEVAGLADQGVKEVTLLGQNVNAYLGKMGGTAEVADFALLLEYVADIPG 229

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           + R+R+TTSHP + +  LI A+  +  L+ +LHLPVQ GSDRIL +M R +TA EY+  I
Sbjct: 230 IERIRFTTSHPNEFTPRLIDAYARIPKLVSHLHLPVQHGSDRILMAMKRGYTAMEYKSTI 289

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            ++R++RPD+A+SSDFIVGFPGET+DDF   M L+D I +  +FSF +SPR GTP +++ 
Sbjct: 290 RKLRAIRPDLAMSSDFIVGFPGETEDDFGKMMKLIDDIHFDNSFSFIFSPRPGTPAASLH 349

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLVGRSPWLQSV 438
           +     VK  RL  LQ  +     S +++ VG +  +L+E   K  G +L+GR+   + V
Sbjct: 350 DDTPHEVKLRRLQELQAVINANIKSISESRVGTVQRILVEGASKRDGSELMGRTECNRVV 409

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
                   +G ++ V IT+ K  TL GE+V 
Sbjct: 410 NFAGHPRLVGQMVDVTITEAKAYTLRGEVVT 440


>gi|238786071|ref|ZP_04630029.1| hypothetical protein yberc0001_25290 [Yersinia bercovieri ATCC
           43970]
 gi|238713010|gb|EEQ05064.1| hypothetical protein yberc0001_25290 [Yersinia bercovieri ATCC
           43970]
          Length = 486

 Score =  484 bits (1247), Expect = e-134,   Method: Composition-based stats.
 Identities = 196/447 (43%), Positives = 282/447 (63%), Gaps = 12/447 (2%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKV 80
           ++ ++  +K++GCQMN YDS +M D+  S  GY    + ++ADL++LNTC IREKA EKV
Sbjct: 12  LMTKKLHIKTWGCQMNEYDSSKMADLLASTHGYLLTETPEEADLLLLNTCSIREKAQEKV 71

Query: 81  YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140
           +S LG  + LK        +L++ V GCVA  EGE + +R+P V+++ GPQT +RLPE++
Sbjct: 72  FSLLGHWKLLKEK----NPELIIGVGGCVASQEGEHLRQRAPCVDIIFGPQTLHRLPEMI 127

Query: 141 ERARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
              +     VVD  +   +KF+RL        R  G TAF++I EGC+K+CTFCVVPYTR
Sbjct: 128 NHVQGSHSSVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTFCVVPYTR 182

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G E+SR    ++ E  +L   GV E+ LLGQNVNA+RG   DG+ C+F++LL  ++ I G
Sbjct: 183 GEEVSRPSDDILFEIAQLAAQGVREVNLLGQNVNAYRGATYDGDICSFAELLRLVAAIDG 242

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           + R+R+TTSHP + +D +I  + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II
Sbjct: 243 IDRVRFTTSHPIEFTDDIIDVYRDTPELVSFLHLPVQSGSDRILTMMKRAHTALEYKAII 302

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            ++R  RP I ISSDFI+GFPGET  DF  TM LV  I +  ++SF YS R GTP +++ 
Sbjct: 303 RKLRQARPGIQISSDFIIGFPGETQQDFEQTMKLVADIRFDTSYSFIYSSRPGTPAADLP 362

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLVGRSPWLQSV 438
           + V E  K +RL  LQ+++ +Q +  +   +G +  +L+E   ++   +L GR+   + V
Sbjct: 363 DDVSEEEKKQRLHILQQRITQQAMEISREMIGTVQRILVEGPSRKNAMELAGRTENNRVV 422

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYG 465
                   IG  + V I DV  S+L G
Sbjct: 423 NFEGTPSMIGQFVDVEIIDVYASSLRG 449


>gi|292898859|ref|YP_003538228.1| MiaB protein (methylthiolation of isopentenylated A37 derivatives I
           rRNA) [Erwinia amylovora ATCC 49946]
 gi|291198707|emb|CBJ45816.1| MiaB protein (methylthiolation of isopentenylated A37 derivatives I
           rRNA) [Erwinia amylovora ATCC 49946]
          Length = 474

 Score =  484 bits (1247), Expect = e-134,   Method: Composition-based stats.
 Identities = 198/449 (44%), Positives = 290/449 (64%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++  +K++GCQMN YDS +M D+  S  GY      +DAD+++LNTC IREKA EKV+
Sbjct: 1   MTKKLHIKTWGCQMNEYDSSKMADLLNSTHGYTLTEQAEDADVLLLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR + LK +      +L++ V GCVA  EG +I +R+  V++V GPQT +RLPE++ 
Sbjct: 61  GLLGRWKKLKEA----NPNLIIGVGGCVASQEGAKIRQRASCVDIVFGPQTLHRLPEMIN 116

Query: 142 RARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
             R  K  VVD  +   +KF+R+        R  G TAF++I EGC+K+CTFCVVPYTRG
Sbjct: 117 SVRGSKSPVVDVSFPEIEKFDRMP-----EPRADGPTAFVSIMEGCNKYCTFCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR    ++ E  +L   GV E+ LLGQNVNA+RG   DG  C+F++LL  ++ I G+
Sbjct: 172 EEVSRPADDILFEVAQLAAQGVREVNLLGQNVNAYRGATYDGGICSFAELLRLVAAIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+TTSHP + +D +I+ + D   L+ YLHLPVQSG+DRIL  M R HTA EY+ II 
Sbjct: 232 DRIRFTTSHPIEFTDDIIEVYRDTPELVSYLHLPVQSGADRILTLMKRAHTALEYKAIIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++ + RPDI ISSDFI+GFPGET  DF  TM LV +I +  ++SF YS R GTP + + +
Sbjct: 292 KLLAARPDIQISSDFIIGFPGETQADFEQTMKLVGEINFDTSYSFIYSARPGTPAAELPD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439
            V E+ K +RL  LQ ++ +Q ++++   +G +  +L+E   ++   +L GR+   + V 
Sbjct: 352 DVSEDEKKQRLYVLQDRISQQAMAWSRRKLGTVQRILVEGTSRKNVMELSGRTECNRVVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
             +   +IG  + V+ITDV  ++L G L+
Sbjct: 412 FEATPDHIGKFVDVKITDVYANSLRGVLL 440


>gi|163739041|ref|ZP_02146454.1| tRNA-i(6)A37 modification enzyme MiaB [Phaeobacter gallaeciensis
           BS107]
 gi|161387846|gb|EDQ12202.1| tRNA-i(6)A37 modification enzyme MiaB [Phaeobacter gallaeciensis
           BS107]
          Length = 440

 Score =  484 bits (1247), Expect = e-134,   Method: Composition-based stats.
 Identities = 245/446 (54%), Positives = 319/446 (71%), Gaps = 9/446 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
            P++ F+K+YGCQMNVYDS RM +    +GY    S DDAD+I+LNTCHIREKAAEKVYS
Sbjct: 3   APKKLFIKTYGCQMNVYDSERMAEALGGEGYVETKSPDDADMILLNTCHIREKAAEKVYS 62

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            LGR + LK        DL + VAGCVAQAEG+EI+RR P+V++VVGPQ+Y+RLPE+  +
Sbjct: 63  ELGRFKGLKAE----KPDLKIGVAGCVAQAEGQEIMRRQPLVDLVVGPQSYHRLPEMEAK 118

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           AR G++V+DTD+  EDKFE+L         KRG TAFLT+QEGCDKFC FCVVPYTRG E
Sbjct: 119 AREGEKVLDTDFPEEDKFEKLK---NRPKAKRGPTAFLTVQEGCDKFCAFCVVPYTRGAE 175

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR   +++ EA+ L++ GV EITLLGQNVNA+ G G +G+  T + L++ L ++ GL R
Sbjct: 176 VSRPADRILREAQDLVERGVREITLLGQNVNAYHGAGPNGD-MTLAQLIWELDKVDGLER 234

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP DM D LI+AHG    LMPYLHLPVQ+GSD+ILK MNR HTA  Y ++I+RI
Sbjct: 235 IRFTTSHPNDMQDDLIEAHGTCAKLMPYLHLPVQAGSDKILKRMNRAHTAESYLRLIERI 294

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+ RPDI IS DFIVGFP ET+ DF+AT+DLV+++ Y  A+SFKYS R GTP +    QV
Sbjct: 295 RAARPDILISGDFIVGFPEETEADFQATLDLVEEVKYGTAYSFKYSTRPGTPAAERP-QV 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
           D     +RL  LQ  L  QQ    D+ VG+ + VL EK G+  G++VG+S +L +V +  
Sbjct: 354 DPKEADDRLQRLQALLTTQQREVQDSMVGRDVTVLFEKAGRFPGQMVGKSDYLHAVHVAD 413

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
            +  IGD+ +VRI     ++L G L+
Sbjct: 414 CDRAIGDLARVRILSSGANSLAGALI 439


>gi|159043568|ref|YP_001532362.1| (dimethylallyl)adenosine tRNA methylthiotransferase
           [Dinoroseobacter shibae DFL 12]
 gi|229890517|sp|A8LSE7|MIAB_DINSH RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|157911328|gb|ABV92761.1| RNA modification enzyme [Dinoroseobacter shibae DFL 12]
          Length = 437

 Score =  484 bits (1246), Expect = e-134,   Method: Composition-based stats.
 Identities = 247/446 (55%), Positives = 312/446 (69%), Gaps = 13/446 (2%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P++ ++K+YGCQMNVYDS RM +    +GY + +  +DAD+I+LNTCHIREKAAEKVYS 
Sbjct: 4   PKKLYIKTYGCQMNVYDSERMAEAMGGEGYVQTDRAEDADMILLNTCHIREKAAEKVYSE 63

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK        DL + VAGCVAQAEG EI+RR P+V++VVGPQ Y+RLPEL  RA
Sbjct: 64  LGRFKPLKAE----KPDLKIGVAGCVAQAEGAEIMRRQPLVDLVVGPQAYHRLPELTARA 119

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             G + +DTD+  EDKF+ L+        KRG TAFLT+QEGCDKFC FCVVPYTRG E+
Sbjct: 120 ATGAKALDTDFPEEDKFDHLAARP---KAKRGPTAFLTVQEGCDKFCAFCVVPYTRGAEV 176

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR  ++V+ EAR L++ GV EITLLGQNVNA+ G          + L++ L+EI GL R+
Sbjct: 177 SRPAARVLTEARDLVERGVREITLLGQNVNAYHGHA-----RGLAGLIWDLAEIDGLERI 231

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+TTSHP DM D LI AHG  D LMPYLHLPVQSGSDRILK+MNR+HTA  Y ++I+RIR
Sbjct: 232 RFTTSHPNDMDDALIAAHGACDKLMPYLHLPVQSGSDRILKAMNRKHTAESYIRLIERIR 291

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           + RPDI +S DFIVGFPGETD DF  TM LV+ +GY QA+SFKYS R GTP +   E V 
Sbjct: 292 AARPDILLSGDFIVGFPGETDQDFADTMALVEAVGYGQAYSFKYSARPGTPAAE-KEDVP 350

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
             V   RL  LQ  L  QQ +  DA VG    VL EK G+  G++VG+S  L +V + + 
Sbjct: 351 GEVADARLQTLQALLTRQQRAIQDAKVGTTARVLFEKPGRLPGQMVGKSEHLHAVHVAAP 410

Query: 444 NHNIGDIIKVRITDVKISTLYGELVV 469
           +   GD+++VRI +   ++L G L+ 
Sbjct: 411 DAARGDLVRVRIAESSANSLRGVLIA 436


>gi|83949580|ref|ZP_00958313.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Roseovarius nubinhibens
           ISM]
 gi|83837479|gb|EAP76775.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Roseovarius nubinhibens
           ISM]
          Length = 440

 Score =  484 bits (1246), Expect = e-134,   Method: Composition-based stats.
 Identities = 241/444 (54%), Positives = 317/444 (71%), Gaps = 8/444 (1%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ ++K+YGCQMNVYDS RM +    QGY    S ++AD+I+LNTCHIREKAAEKVYS L
Sbjct: 5   KKLYIKTYGCQMNVYDSERMAEALGGQGYVETQSPEEADMILLNTCHIREKAAEKVYSEL 64

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR+R LK +      DL + VAGCVAQAEGEEI+RR P+V++VVGP +Y+RLPE+ E+ R
Sbjct: 65  GRMRGLKEA----KPDLKIGVAGCVAQAEGEEIMRRQPLVDLVVGPSSYHRLPEMEEKTR 120

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G++ + TD+  EDKF RL    G    +RG +AFL++QEGCDKFC FCVVPYTRG E S
Sbjct: 121 QGQKALVTDFPEEDKFARLK---GRPKAQRGPSAFLSVQEGCDKFCAFCVVPYTRGAEYS 177

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R +  V+DEAR LI+ GV EITLLGQNVNA+ G+G DG +   + L++ L ++ GL R+R
Sbjct: 178 RPVKAVLDEARDLIERGVREITLLGQNVNAYHGEGPDGAEWGLARLIWELDKLDGLQRIR 237

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +TTSHP DM   LI+A G    LMPYLHLPVQSGSDRILK MNR HTA  Y ++++ IR+
Sbjct: 238 FTTSHPNDMDAALIEALGSCAKLMPYLHLPVQSGSDRILKRMNRSHTAESYLRLMEEIRA 297

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
            RPDI +S DFIVGFP ET++DF+AT+DLV+ + Y  A+SFKYS R GTP +    QV+E
Sbjct: 298 ARPDIVLSGDFIVGFPEETEEDFQATLDLVEAVKYGYAYSFKYSTRPGTPAAERA-QVEE 356

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
            VK ERL  LQ  +   Q    D  VG+ + VL EK G+ +G++VG+S +L +V +    
Sbjct: 357 AVKTERLGRLQDLITRHQREIQDGMVGREMSVLFEKPGRFEGQMVGKSDYLHAVHVKDAL 416

Query: 445 HNIGDIIKVRITDVKISTLYGELV 468
             +GD+ +VRI +   ++L GEL+
Sbjct: 417 VAVGDLRRVRIVESMTNSLAGELI 440


>gi|53804481|ref|YP_113916.1| tRNA-i(6)A37 modification enzyme MiaB [Methylococcus capsulatus
           str. Bath]
 gi|81682096|sp|Q608N1|MIAB_METCA RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|53758242|gb|AAU92533.1| tRNA-i(6)A37 modification enzyme MiaB [Methylococcus capsulatus
           str. Bath]
          Length = 458

 Score =  484 bits (1246), Expect = e-134,   Method: Composition-based stats.
 Identities = 198/449 (44%), Positives = 287/449 (63%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           +PQ+ +++++GCQMN YDS +M D+   S  +E   S ++AD+++LNTC IR+KA EKV+
Sbjct: 1   MPQKLYIETFGCQMNEYDSAKMRDLLEVSDSFELARSPEEADVLLLNTCSIRDKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S LGR R +K  R     ++++ V GCVA  EGE + +R+P V++V GPQT +RLP +LE
Sbjct: 61  SQLGRWRPIKLRR----PEVVIGVGGCVASQEGEALQKRAPYVDIVFGPQTLHRLPSMLE 116

Query: 142 RARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           + R  +R VVD  +   +KF+ L        R  G  AF+++ EGC K+CTFCVVPYTRG
Sbjct: 117 QVRCERRPVVDVSFPAIEKFDALP-----EPRADGPKAFVSVMEGCGKYCTFCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            EISR +  V+ E   L + GV E+ LLGQNVNA+RG   DG     + L++ ++ + G+
Sbjct: 172 EEISRPVDDVIAEIVALAEQGVREVNLLGQNVNAYRGVLADGGMADLALLMHYVAAVDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+TTSHP + SD LI+A  D+  L+ +LHLPVQSGSDRIL+ M R HT  EY   + 
Sbjct: 232 DRIRFTTSHPVEFSDALIEAFRDIPQLVSHLHLPVQSGSDRILRLMKRGHTRAEYMAKVA 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R +RPD+++SSDFIVGFPGETD+DF  TM L++++G+ Q+FSF +S R GTP + M +
Sbjct: 292 KLREIRPDLSLSSDFIVGFPGETDEDFEDTMALIEQLGFDQSFSFIFSARPGTPAAAMAD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439
            V    K  RL  LQ K+ +       + VG I  VL+E   ++   +L GR+   + V 
Sbjct: 352 DVPPETKRARLARLQAKIADNAAKIGASMVGSIQSVLVEGTSRKNFNELSGRTENNRVVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG  + V IT+   ++L G L+
Sbjct: 412 FAGHPRLIGQFVDVVITESLPNSLRGRLI 440


>gi|209542258|ref|YP_002274487.1| (dimethylallyl)adenosine tRNA methylthiotransferase
           [Gluconacetobacter diazotrophicus PAl 5]
 gi|209529935|gb|ACI49872.1| RNA modification enzyme, MiaB family [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 469

 Score =  484 bits (1246), Expect = e-134,   Method: Composition-based stats.
 Identities = 248/461 (53%), Positives = 320/461 (69%), Gaps = 2/461 (0%)

Query: 9   GVAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLN 68
             A   +  +      +   V ++GCQMNVYDS RM D+    GY  V++ D AD+++LN
Sbjct: 4   QPACPPAMDLAPASGSRGLHVITWGCQMNVYDSARMTDVLRPLGYHPVDTPDTADMVILN 63

Query: 69  TCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVV 128
           TCHIR++AAEKV+S LGR+R +K +R  EG   ++ VAGCVAQAEG+EIL R+P V++V+
Sbjct: 64  TCHIRDRAAEKVFSELGRLRLVKEARATEGQQTVLAVAGCVAQAEGKEILARAPFVDIVL 123

Query: 129 GPQTYYRLPELL-ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCD 187
           GPQTY+RLPE++   AR    V+DTD+  E KF+ L       +   G+T+FLTIQEGCD
Sbjct: 124 GPQTYHRLPEMVARAARAAGAVIDTDFPAEQKFDFLPDAQAPQS-PGGITSFLTIQEGCD 182

Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTF 247
           KFC+FCVVPYTRG E SR ++ V+ EAR++++ G  EITLLGQNVNA+ G+G DG     
Sbjct: 183 KFCSFCVVPYTRGAEASRPVASVLREARRMVECGAREITLLGQNVNAYHGEGPDGRVWGL 242

Query: 248 SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307
           + L  +L+ I GL R+RYTTSHPRDM   LI AH DL  LMP+LHLPVQSGSDRIL +MN
Sbjct: 243 ARLAEALAAIPGLARIRYTTSHPRDMDADLIAAHRDLPALMPFLHLPVQSGSDRILDAMN 302

Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           R HTA +YR ++ R+R  RPDIA+SSDFIVG PGETD DF AT+ L+  +G+AQAFSFKY
Sbjct: 303 RGHTAADYRDLVLRLRDARPDIALSSDFIVGHPGETDADFEATLQLIRDVGFAQAFSFKY 362

Query: 368 SPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK 427
           SPR GTP +    QV E+VK  RL  LQ  LR QQ +FND  VG ++ VL   HG++ G+
Sbjct: 363 SPRPGTPAAGAPLQVAEDVKDARLQALQALLRTQQDAFNDGTVGHVVPVLFTGHGRKAGQ 422

Query: 428 LVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           L GRSP+LQ V +   +  IG I  V I +   ++L G LV
Sbjct: 423 LSGRSPYLQPVHVEGPDSLIGQIANVEIRERYTNSLSGTLV 463


>gi|294338754|emb|CAZ87086.1| MiaB protein (Methylthiolation of isopentenylated A37 derivatives
           in tRNA) [Thiomonas sp. 3As]
          Length = 453

 Score =  484 bits (1246), Expect = e-134,   Method: Composition-based stats.
 Identities = 211/454 (46%), Positives = 296/454 (65%), Gaps = 15/454 (3%)

Query: 17  IVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREK 75
           + D  IV ++ F+K++GCQMN YDS +M D+   ++GYE V +  +ADLI+LNTC IREK
Sbjct: 1   MTDASIVTKKVFIKTFGCQMNEYDSAKMADVLGAAEGYEPVATPQEADLILLNTCSIREK 60

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135
           A EKV+S LGR+R LK     +  +LL+ V GCVA  EGE I++R+P V++V GPQT +R
Sbjct: 61  AQEKVFSDLGRLRELKA----DKPNLLIGVGGCVASQEGEAIVKRAPYVDLVFGPQTLHR 116

Query: 136 LPELL-ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCV 194
           LP+L+ +R   G+  VD  +   +KF+ L        R  G +AF++I EGC K+C++CV
Sbjct: 117 LPQLIAQRQALGRAQVDISFPEIEKFDHLPPA-----RVEGPSAFVSIMEGCSKYCSYCV 171

Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL 254
           VPYTRG E+SR L  V+ E  +L   GV E+TLLGQNVNAW G    GE   F+ LL  +
Sbjct: 172 VPYTRGEEVSRPLVDVLTEVAELASLGVREVTLLGQNVNAWLGS---GEGEDFAFLLECV 228

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
           +EI G+ R+RYTTSHP++ +  LI A+G +  L+ ++HLPVQ GSDRIL +M R ++A E
Sbjct: 229 AEIDGIERIRYTTSHPKEFTQRLIDAYGRIPKLVNHVHLPVQHGSDRILAAMKRGYSALE 288

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
           ++ I+ R+R+VRPDI I SDFIVGFPGETD DF   M L++ + +  +FSF +SPR GTP
Sbjct: 289 FKSIVRRLRAVRPDICIGSDFIVGFPGETDADFTQLMKLIEDMQFDASFSFIFSPRPGTP 348

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSP 433
            +N+ +    +VK +RL  LQ ++  Q  + + A V     VLIE    K+  +L GR+ 
Sbjct: 349 AANLADDTPADVKLKRLQTLQAQIEAQASAISAAMVDTEQAVLIEGPSKKDPSELQGRTE 408

Query: 434 WLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
             + V L +    IG I+ VRIT     +L GE+
Sbjct: 409 NNRIVHLKANARLIGQIVPVRITTAYPHSLRGEV 442


>gi|114799640|ref|YP_758837.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Hyphomonas
           neptunium ATCC 15444]
 gi|122942826|sp|Q0C606|MIAB_HYPNA RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|114739814|gb|ABI77939.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Hyphomonas neptunium ATCC
           15444]
          Length = 449

 Score =  484 bits (1246), Expect = e-134,   Method: Composition-based stats.
 Identities = 239/448 (53%), Positives = 309/448 (68%), Gaps = 11/448 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +  F+++YGCQMNVYDS R+ D+    GY  V + + ADL+V+NTCHIREKA EKVYS L
Sbjct: 2   KGLFIRTYGCQMNVYDSERIRDVLRPLGYAPVETPESADLVVVNTCHIREKATEKVYSEL 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA- 143
           G+++ +K +    GG + + VAGCVAQAEGEE++RR P V++V+GPQ Y++LPE++ RA 
Sbjct: 62  GQLKRMKEA---SGGRMTIAVAGCVAQAEGEELIRRQPAVDLVLGPQAYHKLPEMIARAS 118

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           R     ++T++   +KF+ L           G  AF+++QEGCDKFCTFCVVPYTRG E+
Sbjct: 119 RAIGDRLETEFDTVEKFDALPKTRE----ADGPAAFVSVQEGCDKFCTFCVVPYTRGAEM 174

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL---DGEKCTFSDLLYSLSEIKGL 260
           SR +  +V E R L   GV EITLLGQNVNA+ G       GE  T   L   LS+I G+
Sbjct: 175 SRRVDDIVFETRSLASQGVREITLLGQNVNAFHGPAPVLEGGEDWTLGQLCRHLSKIGGI 234

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+RYTTSHPRDM D LI AHGD   +MP+LHLPVQSGSDRILK+MNR HTA  YR II 
Sbjct: 235 ERIRYTTSHPRDMDDDLIAAHGDTPAMMPFLHLPVQSGSDRILKAMNRGHTADHYRDIIT 294

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           R+R+ RPDIAI+SDFIVGFPGE+D DF ATM LV  IGYA A+SFKYS R GTP + M  
Sbjct: 295 RVRAARPDIAIASDFIVGFPGESDADFEATMQLVRDIGYAIAYSFKYSSRPGTPAAEMHG 354

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440
            + E+VK  RL  LQ  LREQQ  FN + +G+ + VL+   G+  G++ GRSP+LQ+V  
Sbjct: 355 HLSESVKDARLQALQALLREQQTEFNASQIGKTLPVLVTGKGRNAGQMHGRSPYLQAVHF 414

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
              +   G I+ V++    +++L GELV
Sbjct: 415 EGPDDLNGKIVDVKVIGASLNSLTGELV 442


>gi|300113051|ref|YP_003759626.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Nitrosococcus watsonii
           C-113]
 gi|299538988|gb|ADJ27305.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Nitrosococcus watsonii
           C-113]
          Length = 447

 Score =  484 bits (1246), Expect = e-134,   Method: Composition-based stats.
 Identities = 204/449 (45%), Positives = 297/449 (66%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++ ++K++GCQMN YDS RM D+   S G E  +  + A++++LNTC +REKA EKV+
Sbjct: 1   MAKKLYIKTHGCQMNEYDSSRMADVLRESHGLELTSDPEQAEVLLLNTCSVREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S LGR R LK SR     +L++ V GCVA  EGE I  R+P V++V GPQT +RLP +L 
Sbjct: 61  SQLGRWRQLKQSR----PELIIGVGGCVASQEGETIRVRAPYVDLVFGPQTIHRLPAMLA 116

Query: 142 RARF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           +AR   + VVD  +   +KF++L        R  G TAF+++ EGC K+C+FCVVPYTRG
Sbjct: 117 QARTRSQPVVDLSFPEIEKFDKLP-----EPRAEGPTAFVSVMEGCSKYCSFCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            EISR L  VV E   L + GV EITLLGQNVNA+RG   +G+    + L+  ++ I+G+
Sbjct: 172 EEISRPLDDVVAEIVGLAEQGVREITLLGQNVNAYRGAMGEGDVADLALLINYVASIEGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+TTSHP + SD LI+A  ++  L  +LHLPVQSGSDR+L  M R HT  EY+  + 
Sbjct: 232 ERIRFTTSHPVEFSDSLIQAFAEVPELASHLHLPVQSGSDRMLGLMKRGHTVLEYKAKLR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R VRPDI+ISSDFIVG PGET+ DF+AT+ LVD++G+  +FSF YSPR GTP +++ +
Sbjct: 292 KLRQVRPDISISSDFIVGLPGETEADFQATLALVDEVGFDHSFSFVYSPRPGTPAASLPD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVV 439
                VK ERL  LQ++LR  +++ +   VG + +VL+E+   K+   L GR+   + V 
Sbjct: 352 HTPIAVKKERLAILQERLRALEIAISQGMVGTVQQVLVERPSKKDPTMLAGRTANNRVVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
            ++    +G  + ++IT+   ++L G ++
Sbjct: 412 FSAPQVMVGQFVNIKITEALPNSLRGIVL 440


>gi|238758019|ref|ZP_04619200.1| hypothetical protein yaldo0001_8970 [Yersinia aldovae ATCC 35236]
 gi|238703773|gb|EEP96309.1| hypothetical protein yaldo0001_8970 [Yersinia aldovae ATCC 35236]
          Length = 482

 Score =  484 bits (1246), Expect = e-134,   Method: Composition-based stats.
 Identities = 200/450 (44%), Positives = 286/450 (63%), Gaps = 12/450 (2%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKV 80
           ++ ++  +K++GCQMN YDS +M D+  S  GY+     ++ADL++LNTC IREKA EKV
Sbjct: 8   LMTKKLHIKTWGCQMNEYDSSKMADLLASTHGYQLTAIPEEADLLLLNTCSIREKAQEKV 67

Query: 81  YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140
           +S LG  + LK        +L++ V GCVA  EGE +  R+P V+V+ GPQT +RLPE++
Sbjct: 68  FSLLGHWKLLKEK----NPNLIIGVGGCVASQEGEHLRLRAPCVDVIFGPQTLHRLPEMI 123

Query: 141 ERAR-FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
              +     VVD  +   +KF+RL        R  G TAF++I EGC+K+CTFCVVPYTR
Sbjct: 124 NHVQGTHSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTFCVVPYTR 178

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G E+SR    ++ E  +L   GV E+ LLGQNVNA+RG   +G+ C+F++LL  ++ I G
Sbjct: 179 GEEVSRPCDDILFEIAQLAAQGVREVNLLGQNVNAYRGATYEGDTCSFAELLRLVAAIDG 238

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           + R+R+TTSHP + +D +I+ + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II
Sbjct: 239 IDRIRFTTSHPIEFTDDIIEVYRDTPELVSFLHLPVQSGSDRILTMMKRAHTALEYKAII 298

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            ++R  RPDI ISSDFI+GFPGET  DF  TM LV  IG+  ++SF YSPR GTP + + 
Sbjct: 299 RKLRQARPDIQISSDFIIGFPGETQQDFEQTMKLVADIGFDTSYSFIYSPRPGTPAAELP 358

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSV 438
           + V E  K +RL  LQ+++ +Q +  +   VG +  +L+E   ++   +L GR+   + V
Sbjct: 359 DDVSEEEKKQRLHILQQRITQQAMGISREMVGTVQRILVESTSRKNVMELAGRTENNRVV 418

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468
                   +G  + V I DV  S+L G L+
Sbjct: 419 NFAGSPELMGKFVDVEIVDVYASSLRGALL 448


>gi|260427313|ref|ZP_05781292.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Citreicella sp. SE45]
 gi|260421805|gb|EEX15056.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Citreicella sp. SE45]
          Length = 435

 Score =  484 bits (1246), Expect = e-134,   Method: Composition-based stats.
 Identities = 248/444 (55%), Positives = 317/444 (71%), Gaps = 13/444 (2%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P++ F+K+YGCQMNVYDS RM +    QGY + +S DDAD+I+LNTCHIREKAAEKVYS 
Sbjct: 4   PKKLFIKTYGCQMNVYDSERMAEAMGGQGYVQTDSPDDADMILLNTCHIREKAAEKVYSE 63

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK  R     DL + VAGCVAQAEGEEI+RR P+V++VVGPQ+Y+RLPEL  +A
Sbjct: 64  LGRYKVLKAER----PDLKIGVAGCVAQAEGEEIMRRQPMVDLVVGPQSYHRLPELEAKA 119

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           R G++ +DTD+  EDKFERL         KRG TAFLT+QEGCDKFC FCVVPYTRG E+
Sbjct: 120 RSGEKALDTDFPEEDKFERLQARP---KAKRGPTAFLTVQEGCDKFCAFCVVPYTRGAEV 176

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR   +V+ EAR L++ GV EITLLGQNVNA+ G          + L+  L+ I GL R+
Sbjct: 177 SRPADRVLTEARDLVERGVREITLLGQNVNAYHGHD-----RGLAGLIRELAAIDGLERI 231

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+TTSHP DM D LI AHGD + LMPYLHLPVQ+GSDRILK MNR HTA  Y ++++R+R
Sbjct: 232 RFTTSHPNDMDDALIAAHGDCEKLMPYLHLPVQAGSDRILKRMNRHHTAEAYLKLVERLR 291

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           + RPD+ +S DFIVGFP ET++DF+AT+DLV+ + Y  AFSFKYS R GTP +    QV 
Sbjct: 292 AARPDLHLSGDFIVGFPEETEEDFQATLDLVEAVQYGSAFSFKYSERPGTPAAERP-QVP 350

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
           E  K +RL  LQ  L  QQ +  DA +G+ + VL EK G+  G++VG+S +L +V + + 
Sbjct: 351 EAEKDDRLQRLQALLVRQQRALQDAMIGREVGVLFEKAGRRPGQMVGKSDYLHAVYVEAD 410

Query: 444 NHNIGDIIKVRITDVKISTLYGEL 467
               GD+ +VRI +   ++L G L
Sbjct: 411 GLARGDLRRVRIVESSPNSLRGVL 434


>gi|34499604|ref|NP_903819.1| (dimethylallyl)adenosine tRNA methylthiotransferase
           [Chromobacterium violaceum ATCC 12472]
 gi|81654199|sp|Q7NQI8|MIAB_CHRVO RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|34105455|gb|AAQ61810.1| conserved hypothetical protein [Chromobacterium violaceum ATCC
           12472]
          Length = 444

 Score =  484 bits (1246), Expect = e-134,   Method: Composition-based stats.
 Identities = 193/448 (43%), Positives = 282/448 (62%), Gaps = 12/448 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ ++K++GCQMN YDS +M D+   ++G  + ++ ++AD+I+ NTC +REKA EKV+S 
Sbjct: 2   KKVYIKTFGCQMNEYDSDKMADVLGSAEGMVKTDNPEEADVILFNTCSVREKAQEKVFSD 61

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE-R 142
           LGRIR LK +      DL++ V GCVA  EG+ I++R+P V+VV GPQT +RLP+L+E R
Sbjct: 62  LGRIRPLKEA----NPDLIIGVGGCVASQEGDAIVKRAPFVDVVFGPQTLHRLPDLIESR 117

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            + G+  VD  +   +KF+ +        +  G  AF++I EGC K+C+FCVVPYTRG E
Sbjct: 118 KQSGRSQVDISFPEIEKFDHIPPA-----KVDGGAAFVSIMEGCSKYCSFCVVPYTRGEE 172

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR    V+ E   L   GV EITLLGQNVNA+RG   DGE   F+ LL  + E+ G+ R
Sbjct: 173 VSRPFEDVLTEIAGLAAQGVKEITLLGQNVNAYRGLMSDGEIADFALLLEYVHEVPGVER 232

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHPR+ S  +I  +  L  L+ +LHLPVQSGSDR+L +M R +T  EY+ II ++
Sbjct: 233 IRFTTSHPREFSQRIIDCYAKLPKLVSHLHLPVQSGSDRVLMAMKRGYTGLEYKSIIRKL 292

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R++RPD+ +SSDFI+GFPGET+ DF  T+ LV    +  +F F YSPR GTP +N+ +  
Sbjct: 293 RAIRPDLCLSSDFIIGFPGETEADFEQTLKLVRDCEFDFSFVFIYSPRPGTPAANLPDDT 352

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLVGRSPWLQSVVLN 441
               K  RL  L + +  +  + N + VG +  VL+E   K+    L  R+   + V   
Sbjct: 353 PHAEKVRRLEALNEVIEAKGYAINQSMVGTVQRVLVENVSKKDATMLAARTANNRVVNFA 412

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELVV 469
                +G +I+V+IT     +L GE + 
Sbjct: 413 GHPRLLGRMIEVKITAAFPHSLAGEALT 440


>gi|242238554|ref|YP_002986735.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Dickeya dadantii Ech703]
 gi|242130611|gb|ACS84913.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Dickeya dadantii Ech703]
          Length = 476

 Score =  484 bits (1245), Expect = e-134,   Method: Composition-based stats.
 Identities = 200/449 (44%), Positives = 291/449 (64%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++  +K++GCQMN YDS ++ D+  S  GY+     ++AD+++LNTC IREKA EKV+
Sbjct: 3   MTKKLHIKTWGCQMNEYDSSKIADLLESTHGYQLTEVAEEADVLLLNTCSIREKAQEKVF 62

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR ++LK+       +L++ V GCVA  EGE I  R+  V+V+ GPQT +RLPE++ 
Sbjct: 63  HQLGRWKSLKD----LNPELIIGVGGCVASQEGEHIRERAHYVDVIFGPQTLHRLPEMIN 118

Query: 142 RAR-FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
             +     +VD  +   +KF+RL        R  G TAF++I EGC+K+CTFCVVPYTRG
Sbjct: 119 HVQGTHSPIVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTFCVVPYTRG 173

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR    ++ E  +L + GV E+ LLGQNVNA+RG+  DGE C+F+DLL  ++ I G+
Sbjct: 174 EEVSRPCDDILYEIAQLAEQGVREVNLLGQNVNAYRGETYDGEICSFADLLRLVAAIDGI 233

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+TTSHP + +D +I  + D   L+ +LHLPVQSGSDR+L  M RRHTA EY+ II 
Sbjct: 234 DRIRFTTSHPIEFTDDIIGVYEDTPELVSFLHLPVQSGSDRVLTMMKRRHTALEYKAIIR 293

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R VRPDI ISSDFIVGFPGET +DF  TM L+  + +  +FSF YSPR GTP ++M++
Sbjct: 294 KLRKVRPDIQISSDFIVGFPGETQEDFEQTMKLIADVNFDMSFSFIYSPRPGTPAADMVD 353

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439
            V E  K +RL  LQ+++ +Q + ++    G +  +L+E   ++   +L GR+   + V 
Sbjct: 354 DVCEEEKKQRLYILQERISQQAMQYSRRMQGTVQRILVEGPSRKNVMELSGRTENNRVVN 413

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG  + V I DV  ++L G +V
Sbjct: 414 FEGSPDMIGKFVDVEIVDVYPNSLRGIVV 442


>gi|121606262|ref|YP_983591.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Polaromonas
           naphthalenivorans CJ2]
 gi|229890592|sp|A1VSP2|MIAB_POLNA RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|120595231|gb|ABM38670.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Polaromonas
           naphthalenivorans CJ2]
          Length = 447

 Score =  484 bits (1245), Expect = e-134,   Method: Composition-based stats.
 Identities = 209/451 (46%), Positives = 298/451 (66%), Gaps = 15/451 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           +P++ F+K++GCQMN YDS +M D+   ++GYE   ++D+ADLI+ NTC +REKA EKV+
Sbjct: 1   MPKKVFIKTFGCQMNEYDSDKMSDVLHAAEGYENTQNIDEADLILFNTCSVREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S LGR+++LK         +L+ V GCVA  EGE I++R+P V+VV GPQT +RLP+LL 
Sbjct: 61  SDLGRVKHLKAK------GVLIGVGGCVASQEGEAIIQRAPYVDVVFGPQTLHRLPQLLA 114

Query: 142 -RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
            RAR GK  VD  +   +KF+ L        R  G +AF++I EGC K+C++CVVPYTRG
Sbjct: 115 SRARLGKPQVDISFPEIEKFDHLPPA-----RVEGASAFVSIMEGCSKYCSYCVVPYTRG 169

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-GLDGEKCTFSDLLYSLSEIKG 259
            E+SR    V+ E   L D GV E+TLLGQNVNA+RG  G   E   F+ LL  +SEI G
Sbjct: 170 EEVSRPFEDVLVEVAGLADQGVKEVTLLGQNVNAYRGSMGGTAEIADFATLLEYVSEIPG 229

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           + R+RY TSHP + +  LI A+  L  L+ +LHLPVQ GSDRIL +M R +TA EY+  I
Sbjct: 230 IERIRYITSHPNEFTQRLIDAYATLPKLVNHLHLPVQHGSDRILMAMKRGYTAMEYKSTI 289

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            ++R++RPD+A+SSDFIVGFPGET+DDF   M LV+ +GY  +FSF +SPR GTP +N+ 
Sbjct: 290 RKLRAIRPDLAMSSDFIVGFPGETEDDFEKLMKLVNDVGYDTSFSFIFSPRPGTPAANLA 349

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSV 438
           +     VK +RL  LQ  L +   + + + +G +  +L+E   ++   +L+GR+   + V
Sbjct: 350 DDTPHEVKLKRLQHLQATLDDSVRAISASRLGTVQRILVEGTARKDASELMGRTECNRVV 409

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
           +L  +   IG ++ VRIT+    +L GE++ 
Sbjct: 410 ILKGQPRLIGQMVDVRITEASQRSLRGEVLT 440


>gi|157964955|ref|YP_001499779.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Rickettsia massiliae
           MTU5]
 gi|229890633|sp|A8F2U6|MIAB_RICM5 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|157844731|gb|ABV85232.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Rickettsia massiliae
           MTU5]
          Length = 450

 Score =  484 bits (1245), Expect = e-134,   Method: Composition-based stats.
 Identities = 235/451 (52%), Positives = 336/451 (74%), Gaps = 7/451 (1%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           ++ ++ ++K+YGCQMNVYDS++M+D+ +  GYE   ++++A +I+LNTCHIREKAAEK Y
Sbjct: 1   MMSKKLYIKTYGCQMNVYDSVKMQDLLYPFGYEPTENIEEAAVIILNTCHIREKAAEKTY 60

Query: 82  SFLGRIRNLKNSRIKEG-GDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140
           S LGRI+ L+++R K+G    ++VVAGCVAQAEGEEI  R+P V++VVGPQ+YY LPEL+
Sbjct: 61  SELGRIKKLQDTRTKQGLSSAIIVVAGCVAQAEGEEIFTRTPYVDIVVGPQSYYNLPELI 120

Query: 141 ERA-RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
            +  R  K ++D D+  E KF++L          +G +AF+++QEGCDKFCTFCVVPYTR
Sbjct: 121 SKVVRHEKHLIDLDFVEEAKFDQLP----EQLYPQGTSAFISVQEGCDKFCTFCVVPYTR 176

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G E SR++ QV  EA K++ +G  EI LLGQNVNA+ GKG   +  + +DLL  L++I  
Sbjct: 177 GAEFSRNVEQVYREALKVVSSGAKEIMLLGQNVNAYHGKGPADKIFSLADLLKHLAQIPN 236

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           L RLRY TSHP DM+D LIK HG    LMP+LHLPVQSGS++ILK+MNR+H    Y  II
Sbjct: 237 LERLRYITSHPIDMNDDLIKLHGTEPKLMPFLHLPVQSGSNKILKAMNRKHDREYYFDII 296

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
           +R+R  RP I +SSDFIVGFPGETD+DF  T+DLV ++ Y Q +SFKYSPR GTPG+   
Sbjct: 297 NRLREARPAIVLSSDFIVGFPGETDEDFEDTLDLVRRVKYGQCYSFKYSPRPGTPGATKT 356

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV 439
           +Q+ E++K+ERL  LQ++L  QQ++FN++CVG  ++VL +++GK   +++G++P++QSV 
Sbjct: 357 DQIPEHIKSERLTILQQELMAQQLAFNESCVGSTMKVLFDRNGKCDDQIIGKTPYMQSVY 416

Query: 440 LNSKN-HNIGDIIKVRITDVKISTLYGELVV 469
           + + N   +G I+ ++IT   +++L GE++V
Sbjct: 417 IQNPNKSLLGKIVDIKITKASLNSLTGEILV 447


>gi|241068677|ref|XP_002408506.1| conserved hypothetical protein [Ixodes scapularis]
 gi|215492494|gb|EEC02135.1| conserved hypothetical protein [Ixodes scapularis]
          Length = 446

 Score =  484 bits (1245), Expect = e-134,   Method: Composition-based stats.
 Identities = 239/446 (53%), Positives = 332/446 (74%), Gaps = 7/446 (1%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + ++ ++K+YGCQMN+YDS++M+D+ +  GYE   +++DAD+I+LNTCHIREKAAEK YS
Sbjct: 1   MSKKLYIKTYGCQMNIYDSVKMQDLLYPFGYEPTENIEDADVIILNTCHIREKAAEKTYS 60

Query: 83  FLGRIRNLKNSRIKEG-GDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
            LGRI+ ++++R K+G    ++VVAGCVAQAEGEEI  R+P V++VVGPQ+YY LPEL+ 
Sbjct: 61  ELGRIKKIQDTRKKQGLNSAIIVVAGCVAQAEGEEIFTRTPYVDIVVGPQSYYNLPELIS 120

Query: 142 RA-RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           +  R  K ++D D+  E KF++L          +G +AF+++QEGCDKFCTFCVVPYTRG
Sbjct: 121 KVVRHEKHLIDLDFVEEAKFDQLP----EQLYPQGTSAFISVQEGCDKFCTFCVVPYTRG 176

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E SR++ QV  EA K++ +G  EI LLGQNVNA+ GKG   +  + +DLL  L++I  L
Sbjct: 177 AEFSRNVEQVYREALKVVSSGAKEIMLLGQNVNAYHGKGPADKIFSLADLLKHLAQIPNL 236

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            RLRYTTSHP DM+D LIK HG    LMP+LHLPVQSGS++ILKSMNR+H    Y  II+
Sbjct: 237 ERLRYTTSHPIDMNDDLIKLHGTEPKLMPFLHLPVQSGSNKILKSMNRKHDREYYFDIIN 296

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           R+R  RPDI +SSDFIVGFPGETD+DF  T+DLV ++ Y Q +SFKYSPR GTPG+   +
Sbjct: 297 RLREARPDIVLSSDFIVGFPGETDEDFEDTLDLVRRVKYGQCYSFKYSPRPGTPGATRTD 356

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440
           Q+ E++K+ERL  LQK+L  QQ++FN++CVG  ++VL +  GK   +++G++P++QSV +
Sbjct: 357 QIPEHIKSERLTILQKELMAQQLAFNESCVGSTMKVLFDHDGKFDDQIIGKTPYMQSVYI 416

Query: 441 NSKN-HNIGDIIKVRITDVKISTLYG 465
            + N   +G II V+IT   +++L G
Sbjct: 417 QNPNKSLLGKIIDVKITKASLNSLTG 442


>gi|293607161|ref|ZP_06689503.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Achromobacter piechaudii
           ATCC 43553]
 gi|292814495|gb|EFF73634.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Achromobacter piechaudii
           ATCC 43553]
          Length = 484

 Score =  483 bits (1244), Expect = e-134,   Method: Composition-based stats.
 Identities = 195/466 (41%), Positives = 292/466 (62%), Gaps = 13/466 (2%)

Query: 6   KLIGVAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADL 64
                A  +S        P++ +++++GCQMN YDS +M D+    QG E  ++ ++AD+
Sbjct: 17  PAAAPALDISAPQAGSDSPRKLYIRTFGCQMNEYDSDKMADVLRGDQGLELTDNPEEADV 76

Query: 65  IVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIV 124
           I+ NTC +REKA EKV+S LGR+++LK    K   +L++ V GCVA  EG  I++R+P V
Sbjct: 77  ILFNTCSVREKAQEKVFSDLGRVQHLK----KTNPNLVIGVGGCVASQEGAAIVKRAPYV 132

Query: 125 NVVVGPQTYYRLPELLERAR-FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQ 183
           +VV GPQT +RLP+L+ R R  G+  VD  +   +KF+ +        R  G TAF++I 
Sbjct: 133 DVVFGPQTLHRLPDLIARRRAEGRSQVDISFPEIEKFDNMPP-----PRVEGATAFVSIM 187

Query: 184 EGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-G 242
           EGC K+C+FCVVPYTRG E+SR    V+ E   L D GV E+TLLGQNVNA+RGK     
Sbjct: 188 EGCSKYCSFCVVPYTRGEEVSRPFEDVLVEVADLADQGVKEVTLLGQNVNAYRGKMEGTD 247

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
           E   F+ LL  + EI G+ R+RYTTSHP++M+  ++ A+  L  L+ +LHLPVQ+GSDR+
Sbjct: 248 EIADFAMLLEYVHEIPGIERIRYTTSHPKEMTQRMVDAYARLPKLVSFLHLPVQAGSDRV 307

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           L  M R +T  E++ ++ R+R+ RPD+ +SSDFIVGFPGET++DF  TM L++ +G+  +
Sbjct: 308 LAGMKRGYTTLEFKSVVRRLRAARPDLTLSSDFIVGFPGETEEDFEKTMKLIEDVGFDTS 367

Query: 363 FSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422
           FSF YS R GTP +++ +   ++VK  RL  LQ  + EQ  +     VG    +L+E   
Sbjct: 368 FSFVYSRRPGTPAADLTDDTPQDVKLRRLQRLQALINEQAATIARNMVGTRQRLLVEGPS 427

Query: 423 -KEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
            ++  +L+GR+   + V   +    IG ++ V IT+   ++L   +
Sbjct: 428 RRDPNELMGRTENNRIVNFAAPARLIGQMVDVIITEAHTNSLRARV 473


>gi|239946801|ref|ZP_04698554.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Rickettsia endosymbiont
           of Ixodes scapularis]
 gi|239921077|gb|EER21101.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Rickettsia endosymbiont
           of Ixodes scapularis]
          Length = 464

 Score =  483 bits (1244), Expect = e-134,   Method: Composition-based stats.
 Identities = 239/449 (53%), Positives = 333/449 (74%), Gaps = 7/449 (1%)

Query: 20  QCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEK 79
           +  + ++ ++K+YGCQMN+YDS++M+D+ +  GYE   +++DAD+I+LNTCHIREKAAEK
Sbjct: 16  KNFMSKKLYIKTYGCQMNIYDSVKMQDLLYPFGYEPTENIEDADVIILNTCHIREKAAEK 75

Query: 80  VYSFLGRIRNLKNSRIKEG-GDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPE 138
            YS LGRI+ ++++R K+G    ++VVAGCVAQAEGEEI  R+P V++VVGPQ+YY LPE
Sbjct: 76  TYSELGRIKKIQDTRKKQGLNSAIIVVAGCVAQAEGEEIFTRTPYVDIVVGPQSYYNLPE 135

Query: 139 LLERA-RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197
           L+ +  R  K ++D D+  E KF++L          +G +AF+++QEGCDKFCTFCVVPY
Sbjct: 136 LISKVVRHEKHLIDLDFVEEAKFDQLP----EQLYPQGTSAFISVQEGCDKFCTFCVVPY 191

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257
           TRG E SR++ QV  EA K++ +G  EI LLGQNVNA+ GKG   +  + +DLL  L++I
Sbjct: 192 TRGAEFSRNVEQVYREALKVVSSGAKEIMLLGQNVNAYHGKGPADKIFSLADLLKHLAQI 251

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
             L RLRYTTSHP DM+D LIK HG    LMP+LHLPVQSGS++ILKSMNR+H    Y  
Sbjct: 252 PNLERLRYTTSHPIDMNDDLIKLHGTEPKLMPFLHLPVQSGSNKILKSMNRKHDREYYFD 311

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
           II+R+R  RPDI +SSDFIVGFPGETD+DF  T+DLV ++ Y Q +SFKYSPR GTPG+ 
Sbjct: 312 IINRLREARPDIVLSSDFIVGFPGETDEDFEDTLDLVRRVKYGQCYSFKYSPRPGTPGAT 371

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQS 437
             +Q+ E++K+ERL  LQK+L  QQ++FN++CVG  ++VL +  GK   +++G++P++QS
Sbjct: 372 RTDQIPEHIKSERLTILQKELMAQQLAFNESCVGSTMKVLFDHDGKFDDQIIGKTPYMQS 431

Query: 438 VVLNSKN-HNIGDIIKVRITDVKISTLYG 465
           V + + N   +G II V+IT   +++L G
Sbjct: 432 VYIQNPNKSLLGKIIDVKITKASLNSLTG 460


>gi|254417885|ref|ZP_05031609.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Brevundimonas sp. BAL3]
 gi|196184062|gb|EDX79038.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Brevundimonas sp. BAL3]
          Length = 472

 Score =  483 bits (1244), Expect = e-134,   Method: Composition-based stats.
 Identities = 250/447 (55%), Positives = 321/447 (71%), Gaps = 7/447 (1%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +R F+K+YGCQMNVYDS RM D+    GY     +  AD ++LNTCHIREKAAEK+YS L
Sbjct: 18  KRLFIKTYGCQMNVYDSERMADVLRPLGYAVTEDVRAADFVILNTCHIREKAAEKIYSEL 77

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER-A 143
           G++R L++ + + GGDL + VAGCVAQAEGEEI++R P V++VVGPQ Y++LPELL R A
Sbjct: 78  GKLRELRDIKRETGGDLTIAVAGCVAQAEGEEIMKRQPAVDIVVGPQAYHQLPELLTRTA 137

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           R     +  D++ +DKF+ L           G TAFLT+QEGCDKFCTFCVVPYTRG E 
Sbjct: 138 RARGERIGADFAPDDKFDALPAAR----FTEGPTAFLTVQEGCDKFCTFCVVPYTRGAEW 193

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR L+ V++EAR L   GV E+TLLGQNVNA+ G+  DG K +  +L Y+L+EI GL R+
Sbjct: 194 SRPLASVLEEARALAGRGVREVTLLGQNVNAYDGERPDGRKSSLVELAYALAEIPGLDRI 253

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           RYTTSHP DMSD LI AHGDLD LMPYLHLPVQ+GSDRIL+ MNR+H    Y  +IDRIR
Sbjct: 254 RYTTSHPNDMSDDLIAAHGDLDALMPYLHLPVQAGSDRILRLMNRKHGRQTYFDLIDRIR 313

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           + RPDIA++ DFIVGFPGETD +F  T+DLV ++ YA AF+F YSPR GTP + M +QV+
Sbjct: 314 ATRPDIAMAGDFIVGFPGETDREFEDTLDLVRRVNYASAFAFMYSPRPGTPAAGMGKQVE 373

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK--LVGRSPWLQSVVLN 441
             V  +RL  L + L EQQ++FN A  G+ + VL ++ G+   +   VGRSP+LQSV ++
Sbjct: 374 PEVAKDRLHRLIELLTEQQIAFNAAQAGRTLNVLFDRKGRHGSRRQAVGRSPYLQSVHVD 433

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
             +H IG I+ V I   + ++L G LV
Sbjct: 434 GADHLIGRIVPVEIIAGQHNSLTGRLV 460


>gi|83595099|ref|YP_428851.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Rhodospirillum
           rubrum ATCC 11170]
 gi|123753019|sp|Q2RMT1|MIAB_RHORT RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|83578013|gb|ABC24564.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Rhodospirillum rubrum
           ATCC 11170]
          Length = 467

 Score =  483 bits (1244), Expect = e-134,   Method: Composition-based stats.
 Identities = 238/448 (53%), Positives = 318/448 (70%), Gaps = 6/448 (1%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           +  ++ F+KSYGCQMNVYD+ RM D+    GY+ V+  D ADL++LNTCHIREKAAEKV+
Sbjct: 1   MANRKLFIKSYGCQMNVYDAGRMADVMAPLGYDLVSEADGADLVILNTCHIREKAAEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S LGR+R  K +   EG  +LV VAGCVAQAEG E++ R+ IV++VVGPQ Y+RLPE++ 
Sbjct: 61  SDLGRLRPFKEAMAAEGRRMLVAVAGCVAQAEGAELMARAKIVDMVVGPQAYHRLPEMVA 120

Query: 142 RARFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           +   G  RV+DTD+ +E KF+ L           G +AFL++QEGCDKFCTFCVVPYTRG
Sbjct: 121 KVERGAGRVLDTDFPIEPKFDFLPAPQAH-----GPSAFLSVQEGCDKFCTFCVVPYTRG 175

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E SR ++ V+ EA  L + GV EITLLGQNVNA+ G+  DG       L  +L+EI G+
Sbjct: 176 AEYSRPVADVLREAALLAEGGVREITLLGQNVNAYHGEAPDGRTWGLGRLARALAEIPGV 235

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            RLRYTTSHPRD+ D LI AH ++  L P++HLPVQSGSDRIL +MNR H    YR+IID
Sbjct: 236 ARLRYTTSHPRDVDDDLIAAHREVAALTPFIHLPVQSGSDRILAAMNRGHDVEGYRRIID 295

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           R+R+ R D+A SSDFIVGFPGE++ DF+AT+ L+D++ + QA+SFKYSPR GTP + +  
Sbjct: 296 RLRAARDDMAFSSDFIVGFPGESERDFQATLALIDEVRFIQAYSFKYSPRPGTPAAALSA 355

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440
           Q+ E  K+ RL+ LQ +L E Q +FN ACVG+ ++VL+++ G+  G+LVGRSPW+Q V L
Sbjct: 356 QLPEAEKSARLIALQARLVEIQQAFNQACVGRPMDVLLDRPGRHAGQLVGRSPWMQPVHL 415

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
            +    +G +  V +     ++L   LV
Sbjct: 416 EAPAALLGTLAPVVVETATSNSLAARLV 443


>gi|78067490|ref|YP_370259.1| tRNA-i(6)A37 modification enzyme MiaB [Burkholderia sp. 383]
 gi|77968235|gb|ABB09615.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia sp. 383]
          Length = 498

 Score =  483 bits (1244), Expect = e-134,   Method: Composition-based stats.
 Identities = 198/471 (42%), Positives = 295/471 (62%), Gaps = 18/471 (3%)

Query: 8   IGVAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIV 66
           I  A   +    +  + ++ +VK++GCQMN YDS +M D+   ++G E+ ++ +DAD+I+
Sbjct: 27  IDDAPRSTTANGEPPMTKKVYVKTFGCQMNEYDSDKMVDVLNAAEGLEKTDTPEDADIIL 86

Query: 67  LNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNV 126
            NTC +REKA EKV+S LGR+R LK +       LL+ V GCVA  EG  I+ R+P V++
Sbjct: 87  FNTCSVREKAQEKVFSDLGRVRELKEA----KPGLLIGVGGCVASQEGASIVSRAPYVDL 142

Query: 127 VVGPQTYYRLPELLE-RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEG 185
           V GPQT +RLP++++ R   G+  VD  +   +KF+ L        R  G +AF++I EG
Sbjct: 143 VFGPQTLHRLPQMIDARRESGRAQVDISFPEIEKFDHLPPA-----RVEGPSAFVSIMEG 197

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG--E 243
           C K+C++CVVPYTRG E+SR L  V+ E   L D GV E+TLLGQNVNA+RG    G  E
Sbjct: 198 CSKYCSYCVVPYTRGDEVSRPLDDVLTEVAGLADQGVREVTLLGQNVNAYRGALAAGSSE 257

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
              F+ L+  +++I G+ R+RYTTSHP++ +  LI  +  +  L+ +LHLPVQ GSDRIL
Sbjct: 258 IADFATLIEYVADIPGIERIRYTTSHPKEFTQRLIDTYAKVPKLVNHLHLPVQHGSDRIL 317

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
            +M R +T  EY+ +I ++R++RPD+++S+D IVGFPGET+DDF   M LV ++ Y  +F
Sbjct: 318 MAMKRGYTVLEYKSVIRKLRAIRPDLSLSTDMIVGFPGETEDDFDKMMALVHEMSYDTSF 377

Query: 364 SFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG- 422
           SF YSPR GTP +N+ +    +VK +RL  LQ  + E     + + VG++  +L+E    
Sbjct: 378 SFIYSPRPGTPAANLHDDTPRDVKLKRLQHLQATIEENVARISQSMVGKVERILVEGPSR 437

Query: 423 KEKGKLVGRSPWLQSVVLNSK----NHNIGDIIKVRITDVKISTLYGELVV 469
           K+  +L GR+   + V   +        IG +I V+I      +L GELV+
Sbjct: 438 KDPNELAGRTENNRVVNFPAPLASHPRLIGQMIDVKINHAYPHSLRGELVL 488


>gi|251790528|ref|YP_003005249.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Dickeya zeae Ech1591]
 gi|247539149|gb|ACT07770.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Dickeya zeae Ech1591]
          Length = 476

 Score =  483 bits (1244), Expect = e-134,   Method: Composition-based stats.
 Identities = 197/450 (43%), Positives = 289/450 (64%), Gaps = 12/450 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++  +K++GCQMN YDS ++ D+  S  GY+  +  ++ADL++LNTC IREKA EKV+
Sbjct: 3   MTKKLHIKTWGCQMNEYDSSKIADLLESTHGYQLTDVAEEADLLLLNTCSIREKAQEKVF 62

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR + LK+       +L++ V GCVA  EGE I  R+  V+V+ GPQT +RLPE++ 
Sbjct: 63  HQLGRWKTLKD----VNPNLIIGVGGCVASQEGEHIRDRAHYVDVIFGPQTLHRLPEMIN 118

Query: 142 RARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
             +  +  +VD  +   +KF+RL        R  G TAF++I EGC+K+CTFCVVPYTRG
Sbjct: 119 HVQGTRSPIVDISFPEVEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTFCVVPYTRG 173

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR    V+ E  +L   GV E+ LLGQNVNA+RG   DG+ C+F++LL  ++ I G+
Sbjct: 174 EEVSRPADDVLFEIAQLAAQGVREVNLLGQNVNAYRGATHDGDICSFAELLRLVAAIDGI 233

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+ TSHP + +D +I  + D   L+ +LHLPVQSGSDRIL  M RRHTA EY+ II 
Sbjct: 234 DRIRFITSHPIEFTDDIISVYEDTPELVSFLHLPVQSGSDRILTMMKRRHTALEYKAIIR 293

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R  RP I ISSDFI+GFPGET +DF  TM L+  + +  +FSF YSPR GTP ++M++
Sbjct: 294 KLRKARPSIQISSDFIIGFPGETQEDFEQTMQLIADVDFDISFSFIYSPRPGTPAADMVD 353

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439
            V E  K +RL  LQ+++ +Q + ++   +G +  +L+E   ++   +L GR+   + V 
Sbjct: 354 DVTEEEKKQRLYILQERINQQAMQYSRRMMGTVQRILVEGTSRKNVMELSGRTENNRVVN 413

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELVV 469
                  IG  + V I DV  ++L G +V+
Sbjct: 414 FEGTPDMIGKFVDVEIVDVYPNSLRGVVVL 443


>gi|212712962|ref|ZP_03321090.1| hypothetical protein PROVALCAL_04060 [Providencia alcalifaciens DSM
           30120]
 gi|212684440|gb|EEB43968.1| hypothetical protein PROVALCAL_04060 [Providencia alcalifaciens DSM
           30120]
          Length = 476

 Score =  483 bits (1244), Expect = e-134,   Method: Composition-based stats.
 Identities = 197/447 (44%), Positives = 293/447 (65%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ ++K++GCQMN YDS +M  +  S  GY+  +  ++ADL++LNTC IREKA EKV+  
Sbjct: 5   KKLYMKTWGCQMNEYDSSKMVSLLESTHGYQLTDIAEEADLLLLNTCSIREKAQEKVFHQ 64

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR +  K+       D+++ V GCVA  EG+ I +R+P V++V GPQT +RLPE++ + 
Sbjct: 65  LGRWKFFKDK----KPDIIIGVGGCVASQEGDFIRQRAPCVDIVFGPQTLHRLPEMINQI 120

Query: 144 RFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           +  +  ++D  +   +KF+RL        R  G TAF++I EGC+K+CTFCVVPYTRG E
Sbjct: 121 QGNRSPIIDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTFCVVPYTRGEE 175

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR    ++ E  +L   GV E+ LLGQNVNA+RG+  DGE C+F++LL  ++ I G+ R
Sbjct: 176 VSRPCDDILFEIAQLAAQGVREVNLLGQNVNAYRGETFDGEICSFAELLRLVASIDGIDR 235

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP + +D +I+ + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II ++
Sbjct: 236 VRFTTSHPIEFTDDIIEVYRDTPELVSFLHLPVQSGSDRILTMMKRAHTALEYKAIIRKL 295

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R  RP I ISSDFIVGFPGET DDF  TM L+  + +  ++SF YS R GTP +++ + V
Sbjct: 296 REARPGILISSDFIVGFPGETTDDFEKTMKLIADVNFDMSYSFVYSARPGTPAADLPDDV 355

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441
            E+ K ERL  LQ+++ +Q +SF+ A +G +  +L+E   ++   +L GR+   + V   
Sbjct: 356 SEDEKKERLYLLQQRINQQAMSFSRAMLGTVQRILVEGTSRKNVMELSGRTENNRVVNFE 415

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                IG  + V I DV  ++L G+++
Sbjct: 416 GTPDMIGKFVDVEIVDVYTNSLRGKVI 442


>gi|289671358|ref|ZP_06492433.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Xanthomonas
           campestris pv. musacearum NCPPB4381]
          Length = 484

 Score =  483 bits (1243), Expect = e-134,   Method: Composition-based stats.
 Identities = 201/462 (43%), Positives = 290/462 (62%), Gaps = 17/462 (3%)

Query: 14  VSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHI 72
           V++     +V  + ++K++GCQMN YDS +M D+  + +G E  ++ +DAD++++NTC I
Sbjct: 25  VARPSAPAVVRGKLYIKTHGCQMNEYDSAKMADVLAASEGLELTDNPEDADVVLVNTCSI 84

Query: 73  REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT 132
           REKA EKV+S LGR + LK      G  +++ V GCVA  EGE I++R+P V++V GPQT
Sbjct: 85  REKAQEKVFSQLGRWKALKAG----GKPVIIGVGGCVASQEGEAIVKRAPYVDLVFGPQT 140

Query: 133 YYRLPELL-ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCT 191
            +RLPEL+  R   GK  VD  +   +KF+RL        R  G +AF++I EGC K+C+
Sbjct: 141 LHRLPELIRARRESGKSQVDISFPEIEKFDRLP-----EPRADGPSAFVSIMEGCSKYCS 195

Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK-----CT 246
           FCVVPYTRG E+SR    V+ E  +L   GV EI LLGQNVNA+RG              
Sbjct: 196 FCVVPYTRGEEVSRPFEDVLVEVAQLAAQGVREINLLGQNVNAYRGAYGADAGDAAQYAD 255

Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306
              L+ ++++I G+ R+R+TTSHP + SD L+ A+ D+  L  YLHLPVQ+GSDRIL +M
Sbjct: 256 LGLLIRTIAQIDGIGRIRFTTSHPLEFSDSLVDAYRDVPQLANYLHLPVQAGSDRILSAM 315

Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
            R +TA E++  I ++R+VRPDI+ISSDFIVGFPGET+ DF  TM L++ +G+ Q+FSF 
Sbjct: 316 KRGYTALEFKSKIRKLRAVRPDISISSDFIVGFPGETEADFEKTMKLIEDVGFDQSFSFV 375

Query: 367 YSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEK 425
           YS R GTP S++ +   E VK  RL  LQ  +     S + + VG +  VL+E    ++ 
Sbjct: 376 YSRRPGTPASDLQDDTPEAVKQARLARLQAHISAHAASISQSMVGSVQRVLVEGPSRRDP 435

Query: 426 GKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
            +L G+S  ++ V        IG  + V IT+   ++L G +
Sbjct: 436 NELTGKSENMRPVNFPGNPRLIGQFVDVLITEAMSNSLRGRI 477


>gi|157804180|ref|YP_001492729.1| hypothetical protein A1E_05140 [Rickettsia canadensis str. McKiel]
 gi|229890632|sp|A8F011|MIAB_RICCK RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|157785443|gb|ABV73944.1| hypothetical protein A1E_05140 [Rickettsia canadensis str. McKiel]
          Length = 446

 Score =  483 bits (1243), Expect = e-134,   Method: Composition-based stats.
 Identities = 242/448 (54%), Positives = 336/448 (75%), Gaps = 7/448 (1%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + ++ ++K+YGCQMNVYDS++M+D+ +  GYE   ++ +AD+I+LNTCHIREKAAEK+YS
Sbjct: 1   MSKKLYIKTYGCQMNVYDSVKMQDLLYPFGYESTENIKEADVIILNTCHIREKAAEKIYS 60

Query: 83  FLGRIRNLKNSRIKEG-GDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
            LGRI+ L+++R K G    ++VVAGCVAQAEGEEI  R+P V++VVGPQ+YY LPEL+ 
Sbjct: 61  ELGRIKKLQDTRKKHGLSSAIIVVAGCVAQAEGEEIFTRTPYVDIVVGPQSYYNLPELIS 120

Query: 142 RA-RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           +  R  K ++D D+  E KF++L          +G +AF+++QEGCDKFCTFCVVPYTRG
Sbjct: 121 KVVRHEKHLIDLDFVEEAKFDQLP----EQLYPQGASAFISVQEGCDKFCTFCVVPYTRG 176

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
           +E SR++ QV  EA K++ NG  EI LLGQNVNA+ GKG+D +  + +DL+  L++I  L
Sbjct: 177 VEFSRNVEQVYREALKVVSNGAREIMLLGQNVNAYHGKGVDDKIFSLADLIRYLAQIPNL 236

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            RLRYTTSHP DM+D LIK H     LMP++HLPVQSGS++ILK+MNR+H    Y  II+
Sbjct: 237 ERLRYTTSHPIDMTDDLIKLHSIESKLMPFVHLPVQSGSNKILKAMNRKHDREYYFNIIN 296

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           R+R  RPDI +SSDFIVGFPGETD+DF  T+DLV KI Y Q +SFKYSPR GTPG+   +
Sbjct: 297 RLREARPDIVLSSDFIVGFPGETDEDFEDTLDLVRKIKYGQCYSFKYSPRPGTPGATRTD 356

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440
           Q+ E++K+ERL  LQK+L  QQ++FN++CVG  ++VL ++ GK  G+++G++P++QSV +
Sbjct: 357 QIPEHIKSERLTILQKELSSQQLAFNESCVGSTMKVLFDRSGKFDGQIIGKTPYMQSVYI 416

Query: 441 NSKN-HNIGDIIKVRITDVKISTLYGEL 467
           N+ N   +  II V+IT    ++L GE+
Sbjct: 417 NNTNQDLLCKIIDVKITKATSNSLTGEI 444


>gi|311108329|ref|YP_003981182.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Achromobacter
           xylosoxidans A8]
 gi|310763018|gb|ADP18467.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Achromobacter
           xylosoxidans A8]
          Length = 477

 Score =  483 bits (1243), Expect = e-134,   Method: Composition-based stats.
 Identities = 194/448 (43%), Positives = 292/448 (65%), Gaps = 13/448 (2%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           P++ +++++GCQMN YDS +M D+    QG E  ++ +DAD+I+ NTC +REKA EKV+S
Sbjct: 28  PRKLYIRTFGCQMNEYDSDKMADVLRGDQGLELTDNPEDADVILFNTCSVREKAQEKVFS 87

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            LGR+++LK    K   +L++ V GCVA  EGE I++R+P V+VV GPQT +RLP+L++R
Sbjct: 88  DLGRVQHLK----KTNPNLVIGVGGCVASQEGEAIVKRAPYVDVVFGPQTLHRLPDLIKR 143

Query: 143 AR-FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
            R  G+  VD  +   +KF+ +        R  G TAF++I EGC K+C+FCVVPYTRG 
Sbjct: 144 RRDEGRSQVDISFPEIEKFDNMPP-----PRVDGATAFVSIMEGCSKYCSFCVVPYTRGE 198

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGL 260
           E+SR    V+ E   L D GV E+TLLGQNVNA+RG+  D  E   F+ LL  + EI G+
Sbjct: 199 EVSRPFEDVLVEVADLADQGVKEVTLLGQNVNAYRGRMTDSDEIADFAMLLEYVHEIPGI 258

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+RYTTSHP++M+  ++ A+  L  L+ +LHLPVQ+GSDR+L  M R +T  E++ ++ 
Sbjct: 259 ERIRYTTSHPKEMTQRMVDAYARLPKLVSFLHLPVQAGSDRVLAGMKRGYTTLEFKSVVR 318

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           R+R+ RPD+ +SSDFIVGFPGET++DF  TM L++ +G+  +FSF YS R GTP +++ +
Sbjct: 319 RLRAARPDLTLSSDFIVGFPGETEEDFEKTMKLIEDVGFDTSFSFVYSRRPGTPAADLQD 378

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVV 439
              ++VK  RL  LQ  + EQ  +     +G    +L+E    ++  +L+GR+   + V 
Sbjct: 379 DTPQDVKLRRLQRLQALINEQAATIARNMIGTRQRLLVEGPSRRDPNELMGRTENNRIVN 438

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGEL 467
             +    IG ++ V IT+   ++L   +
Sbjct: 439 FAAPARLIGQMVDVIITEAHTNSLRARV 466


>gi|90407491|ref|ZP_01215674.1| tRNA-i(6)A37 modification enzyme MiaB [Psychromonas sp. CNPT3]
 gi|90311412|gb|EAS39514.1| tRNA-i(6)A37 modification enzyme MiaB [Psychromonas sp. CNPT3]
          Length = 473

 Score =  483 bits (1243), Expect = e-134,   Method: Composition-based stats.
 Identities = 197/449 (43%), Positives = 292/449 (65%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           +  +  VK++GCQMN YDS +M D+   S GY  V++ +DAD+I+LNTC IREKA EKV+
Sbjct: 1   MSLKLHVKTWGCQMNEYDSSKMADLLNSSNGYISVDNAEDADVILLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR + LK+        L++ V GCVA  EG+ I RR+P V++V GPQT +RLP++++
Sbjct: 61  HQLGRWKKLKDK----KPGLIIGVGGCVASQEGKAIRRRAPYVDIVFGPQTLHRLPKMIQ 116

Query: 142 RAR-FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
             +     V+D  +   +KF+ L        R  G TAF+TI EGC K+CTFC+VPYTRG
Sbjct: 117 DVKDNNHAVIDVSFPEIEKFDCLPDA-----RADGATAFVTIMEGCSKYCTFCIVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR +  ++ E  +L + GV EI LLGQNVN++ G   DG+ C+F++LL +++ I G+
Sbjct: 172 EEVSRPVDDILLEVAQLAEQGVREINLLGQNVNSYIGATFDGKTCSFAELLRNVASIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            RLRYTTS+P D  D +I  + D   L+ +LHLPVQ+GSDRIL +M R HTA +Y++ I 
Sbjct: 232 DRLRYTTSNPIDFDDEIIDVYRDTPELVDFLHLPVQAGSDRILSAMKRGHTAAQYKEKIV 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
            ++ VRP++ +SSDFIVGFP ETD+DF+ TMDL+++IG+  ++SF YS R GTP ++M +
Sbjct: 292 ALKLVRPNLTLSSDFIVGFPNETDEDFQQTMDLIEEIGFDISYSFIYSQRPGTPAADMPD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439
            V   VK ERL  LQ  + +Q +      VG +  +L+E   ++   +L GR+   + V 
Sbjct: 352 DVSLQVKKERLARLQHAITQQALQIARRMVGSVQRILVEGPSRKNIMELCGRTENNRIVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
               + +IG  + V IT+V  +++ G+ +
Sbjct: 412 FEGDHRSIGSFVDVEITEVHSNSIRGKFI 440


>gi|317404691|gb|EFV85083.1| hypothetical protein HMPREF0005_04066 [Achromobacter xylosoxidans
           C54]
          Length = 477

 Score =  482 bits (1242), Expect = e-134,   Method: Composition-based stats.
 Identities = 194/447 (43%), Positives = 294/447 (65%), Gaps = 13/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ +++++GCQMN YDS +M D+    QG E  ++ +DAD+I+ NTC +REKA EKV+S 
Sbjct: 29  RKLYIRTFGCQMNEYDSDKMADVLRGDQGLELTDNPEDADVILFNTCSVREKAQEKVFSD 88

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR+++LK    K   +L++ V GCVA  EGE I++R+P V+VV GPQT +RLP+L++R 
Sbjct: 89  LGRVQHLK----KTNPNLVIGVGGCVASQEGEAIVKRAPYVDVVFGPQTLHRLPDLIQRR 144

Query: 144 R-FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           R  G+  VD  +   +KF+ +        R  G TAF++I EGC K+C+FCVVPYTRG E
Sbjct: 145 RAEGRSQVDISFPEIEKFDNMPP-----PRVEGATAFVSIMEGCSKYCSFCVVPYTRGEE 199

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLV 261
           +SR    V+ E   L D GV E+TLLGQNVNA+RG+  D GE   F+ LL  + EI G+ 
Sbjct: 200 VSRPFDDVLVEVADLADQGVKEVTLLGQNVNAYRGRMSDSGEIADFAMLLEYVHEIPGIE 259

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+RYTTSHP++M+  ++ A+  L  L+ +LHLPVQ+GSDR+L +M R +T  E++ ++ R
Sbjct: 260 RIRYTTSHPKEMTQRMVDAYARLPKLVSFLHLPVQAGSDRVLAAMKRGYTTLEFKSVVRR 319

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R+ RPD+ +SSDFIVGFPGET++DF  TM L++ +G+  +FSF YS R GTP +++ ++
Sbjct: 320 LRAARPDLTLSSDFIVGFPGETEEDFEKTMKLIEDVGFDTSFSFVYSRRPGTPAADLHDE 379

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVL 440
             ++VK  RL  LQ  + EQ  +     +G    +L+E    ++  +L+GR+   + V  
Sbjct: 380 TPQDVKLRRLQRLQALINEQAAAIARNMIGTRQRLLVEGPSRRDPNELMGRTENNRIVNF 439

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGEL 467
            +    IG ++ V IT+   ++L   +
Sbjct: 440 AAPARLIGQMVDVIITEAHTNSLRARV 466


>gi|332561273|ref|ZP_08415591.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Rhodobacter
           sphaeroides WS8N]
 gi|332275071|gb|EGJ20387.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Rhodobacter
           sphaeroides WS8N]
          Length = 436

 Score =  482 bits (1242), Expect = e-134,   Method: Composition-based stats.
 Identities = 242/442 (54%), Positives = 311/442 (70%), Gaps = 14/442 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F+K+YGCQMNVYDS RM +   ++GY      ++AD+++LNTCHIREKAAEKVYS L
Sbjct: 5   RKLFIKTYGCQMNVYDSERMAEALGARGYVLTEVAEEADMVLLNTCHIREKAAEKVYSDL 64

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR+R LK +      DL + VAGCVAQAEGEEIL+R P+V++VVGPQ+Y+RLP++L+R  
Sbjct: 65  GRLRPLKTA----KPDLKIGVAGCVAQAEGEEILKRMPLVDLVVGPQSYHRLPDMLDRTE 120

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G RVVDTD+  EDKF+ L          RG  AFLT+QEGCDKFC FCVVPYTRG E+S
Sbjct: 121 GGARVVDTDFPEEDKFDHLP----ERKATRGPAAFLTVQEGCDKFCAFCVVPYTRGAEVS 176

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R  ++++ EAR L++ GV EITLLGQNVNAW   G          L+  L+ I GL RLR
Sbjct: 177 RPFARLMAEARGLVERGVREITLLGQNVNAWSSDG-----RGLGGLIRELARIDGLERLR 231

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           YTTSHP DM+D LI+AHG    LMPYLHLPVQSGSDRILK+MNR+HTA  Y ++I+RIR+
Sbjct: 232 YTTSHPNDMADDLIEAHGAEPKLMPYLHLPVQSGSDRILKAMNRKHTAEHYLRLIERIRA 291

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
            RPDI ++SDFIVGFPGET+ DF AT+DL+  +G+  AFSFKYS R GTP +   E +  
Sbjct: 292 ARPDILLTSDFIVGFPGETEADFEATLDLIRAVGFGSAFSFKYSARPGTPAAEKPE-LPT 350

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
            V   RL  LQ  + EQQ +   A VG+ + VL EK G+  G++VG+S  L +V +    
Sbjct: 351 EVCDARLQRLQALVTEQQRAAQVAMVGREVGVLYEKAGRLPGQMVGKSDHLHAVHVEDPA 410

Query: 445 HNIGDIIKVRITDVKISTLYGE 466
             +GD+++VRIT    ++L  E
Sbjct: 411 GRVGDLVRVRITASAPNSLAAE 432


>gi|120609569|ref|YP_969247.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Acidovorax
           citrulli AAC00-1]
 gi|229890406|sp|A1TKI5|MIAB_ACIAC RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|120588033|gb|ABM31473.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Acidovorax citrulli
           AAC00-1]
          Length = 449

 Score =  482 bits (1242), Expect = e-134,   Method: Composition-based stats.
 Identities = 205/451 (45%), Positives = 291/451 (64%), Gaps = 15/451 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++ FVK++GCQMN YDS +M D+   +QGYE    +++ADLI+ NTC +REKA EKV+
Sbjct: 1   MAKKVFVKTFGCQMNEYDSDKMVDVLNAAQGYEPTQDVEEADLILFNTCSVREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL- 140
           S LGRI++LK   +K      + V GCVA  EG+EI++R+P V+VV GPQT +RLPELL 
Sbjct: 61  SDLGRIKHLKARGVK------IGVGGCVASQEGDEIIKRAPYVDVVFGPQTLHRLPELLA 114

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           +R    +  VD  +   +KF+ L        R  G +AF++I EGC K+C++CVVPYTRG
Sbjct: 115 QREALARPQVDISFPEIEKFDHLPPA-----RVEGASAFVSIMEGCSKYCSYCVVPYTRG 169

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-GLDGEKCTFSDLLYSLSEIKG 259
            E+SR    V+ E   L D GV E+TLLGQNVNA+ GK G   E   F+ LL  +++I G
Sbjct: 170 EEVSRPFDDVLVEVAGLADQGVKEVTLLGQNVNAYLGKMGGTAEVADFALLLEYVADITG 229

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           + R+R+TTSHP + +  LI A+  +  L+ +LHLPVQ GSDRIL +M R +TA EY+  I
Sbjct: 230 IERIRFTTSHPNEFTQRLIDAYARIPKLVSHLHLPVQHGSDRILMAMKRGYTAMEYKSTI 289

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            ++R++RPD+A+SSDFIVGFPGET+DDF   M L+D I +  +FSF +SPR GTP +++ 
Sbjct: 290 RKLRAIRPDLAMSSDFIVGFPGETEDDFGKMMKLIDDIHFDNSFSFIFSPRPGTPAASLH 349

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLVGRSPWLQSV 438
           +     VK  RL  LQ  +     S +++ VG +  +L+E   K  G +L+GR+   + V
Sbjct: 350 DDTPHEVKLRRLQELQAVINANIKSISESRVGTVQRILVEGASKRDGSELMGRTECNRVV 409

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
                   +G ++ V IT+ K  TL GE+V 
Sbjct: 410 NFAGHPRLVGQMVDVTITEAKAYTLRGEVVT 440


>gi|319786436|ref|YP_004145911.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Pseudoxanthomonas
           suwonensis 11-1]
 gi|317464948|gb|ADV26680.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Pseudoxanthomonas
           suwonensis 11-1]
          Length = 484

 Score =  482 bits (1242), Expect = e-134,   Method: Composition-based stats.
 Identities = 204/449 (45%), Positives = 294/449 (65%), Gaps = 14/449 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + ++K++GCQMN YDS RM D+    +G E  ++ ++AD++++NTC IREKA EKV+S L
Sbjct: 44  KLYIKTHGCQMNEYDSARMADVLAEHEGLELTDNPEEADVVLVNTCSIREKAQEKVFSQL 103

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR + LK      G ++++ V GCVA  EGE I++R+P V++V GPQT +RLPEL+   R
Sbjct: 104 GRWKALKEG----GREVIIGVGGCVASQEGEAIVKRAPYVDLVFGPQTLHRLPELIRARR 159

Query: 145 FGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             +R  VD  +   +KF+RL        R  G +AF++I EGC K+C+FCVVPYTRG E+
Sbjct: 160 EQQRPQVDISFPEIEKFDRLP-----EPRAEGPSAFVSIMEGCSKYCSFCVVPYTRGTEV 214

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG--EKCTFSDLLYSLSEIKGLV 261
           SR    V+ E  +L   GV EI LLGQNVNA+RG   +G  E      L+ ++++I+G+ 
Sbjct: 215 SRPFEDVLVEVAQLAAQGVREINLLGQNVNAYRGPMGEGTEEVADLGLLIRTIAQIEGIG 274

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHP + SD L++A+ D+  L  YLHLPVQSGSDRIL +M R +T  E++Q I +
Sbjct: 275 RIRFTTSHPLEFSDSLVEAYRDVPQLANYLHLPVQSGSDRILGAMKRGYTTLEFKQKIRK 334

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R+VRPDI+ISSDFIVGFPGETD DF  TM L++ +G+ Q+FSF YS R GTP +++ + 
Sbjct: 335 LRAVRPDISISSDFIVGFPGETDADFEKTMKLIEDVGFDQSFSFIYSRRPGTPAADLPDD 394

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVL 440
           V +  K  RL  LQ  +       ++A VG +  VL+E   K+   +L G++  ++SV  
Sbjct: 395 VGDEAKHARLSRLQATINANAARISEAMVGSVQTVLVEGPSKKNPAELTGKTENMRSVNF 454

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELVV 469
                 +G  + VRIT    ++L GELV+
Sbjct: 455 PGNPRLVGQFVDVRITAALTNSLRGELVL 483


>gi|229890678|sp|Q3IK75|MIAB_PSEHT RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
          Length = 482

 Score =  482 bits (1242), Expect = e-134,   Method: Composition-based stats.
 Identities = 196/450 (43%), Positives = 289/450 (64%), Gaps = 13/450 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++  +K++GCQMN YDS +M ++  +  GY+  +   DAD+I+LNTC IREKA EKV+
Sbjct: 1   MSKKLHIKTWGCQMNEYDSQKMAELLDATNGYQLTDDATDADVILLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR + LK+    +  DL++ V GCVA  EG+ I +R+P V+V+ GPQT +RLPE+++
Sbjct: 61  HQLGRWKLLKD----DKPDLIIGVGGCVASQEGDSIRQRAPFVDVIFGPQTLHRLPEMIK 116

Query: 142 RAR--FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           + +   G  VVD  +   +KF+RL        +  G +AF++I EGC K+CTFCVVPYTR
Sbjct: 117 QVQGDKGSSVVDISFPEIEKFDRLP-----EPKADGPSAFVSIMEGCSKYCTFCVVPYTR 171

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G E+SR +  V+ E  +L +  V E+ LLGQNVNA+RG   DGE C FSDL+  ++ I G
Sbjct: 172 GEEVSRPVDDVLLEIAQLAEQSVREVNLLGQNVNAYRGDTHDGEICYFSDLIRLIAAIDG 231

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           + R+RYTTSHP + +  ++  + D+  L+ +LHLPVQSGSDRIL  M R HTA EY+  I
Sbjct: 232 IDRIRYTTSHPVEFTQDIVDVYADVPELVDHLHLPVQSGSDRILNLMKRGHTAIEYKSTI 291

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            ++R +RP++++SSDFI+GFPGET DDF ATM L+  +G+  +FSF YS R GTP +++ 
Sbjct: 292 RKLRKIRPNLSMSSDFIIGFPGETQDDFEATMKLISDVGFDMSFSFIYSARPGTPAADLP 351

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSV 438
           + V E  K ERL  LQ ++ +     +         +L+E   K+   +L GR+   + V
Sbjct: 352 DDVTEQEKKERLYLLQNRITQMAQQISRQMFDTEQRILVEGPSKKNPMELRGRTENNRVV 411

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468
                +  IG  + VRIT+   ++L G+L+
Sbjct: 412 NFVGPHTVIGQFVDVRITEALPNSLRGDLI 441


>gi|149202109|ref|ZP_01879082.1| tRNA-i(6)A37 modification enzyme MiaB [Roseovarius sp. TM1035]
 gi|149144207|gb|EDM32238.1| tRNA-i(6)A37 modification enzyme MiaB [Roseovarius sp. TM1035]
          Length = 440

 Score =  482 bits (1242), Expect = e-134,   Method: Composition-based stats.
 Identities = 245/444 (55%), Positives = 318/444 (71%), Gaps = 10/444 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ ++K+YGCQMNVYDS RM +     GY       +AD+I+LNTCHIREKAAEKVYS L
Sbjct: 5   KKLYIKTYGCQMNVYDSERMAEAMGGSGYVETQDPAEADMILLNTCHIREKAAEKVYSEL 64

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR++ LK     +  DL + V GCVAQAEGEEI+RR P+V++VVGPQ+Y+RLPE+  R R
Sbjct: 65  GRMKQLKL----DKPDLKIGVTGCVAQAEGEEIMRRQPLVDLVVGPQSYHRLPEMEARVR 120

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G++ +DT++ +EDKF+ L         +RG TAFLT+QEGCDKFC FCVVPYTRG E+S
Sbjct: 121 AGEKALDTEFPIEDKFDTL---RHRPKARRGPTAFLTVQEGCDKFCAFCVVPYTRGAEVS 177

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R  S+V++EAR L++ GV EITLLGQNVNA+ G G  G+    + L+++LSEI GL R+R
Sbjct: 178 RPASRVLEEARDLVERGVREITLLGQNVNAYHGAGEGGD-WGLARLVWALSEIDGLERIR 236

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +TTSHP DM D LI AHG+   LMPYLHLPVQSGSDRILK MNR HTA  Y ++I+RIR+
Sbjct: 237 FTTSHPNDMDDDLIAAHGECAKLMPYLHLPVQSGSDRILKRMNRSHTAESYLRLIERIRA 296

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
            RPDI +S DFIVGFP ETD DF+ATM+L++ + Y  AFSFKYS R GTP +    QV E
Sbjct: 297 ARPDILLSGDFIVGFPEETDADFQATMELIEAVNYGSAFSFKYSTRPGTPAAERP-QVPE 355

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
            VK ERL  LQ+ +  QQ +  DA VG+ + VL EK G+  G++VG+S  L +V +   +
Sbjct: 356 EVKTERLYRLQELITRQQRAAQDAMVGRRVGVLFEKAGRMPGQMVGKSDHLHAVHVTG-D 414

Query: 445 HNIGDIIKVRITDVKISTLYGELV 468
             IGD+ +V I +   ++L G L+
Sbjct: 415 VAIGDLRQVEIIESGPNSLAGRLL 438


>gi|299133384|ref|ZP_07026579.1| RNA modification enzyme, MiaB family [Afipia sp. 1NLS2]
 gi|298593521|gb|EFI53721.1| RNA modification enzyme, MiaB family [Afipia sp. 1NLS2]
          Length = 476

 Score =  482 bits (1242), Expect = e-134,   Method: Composition-based stats.
 Identities = 233/449 (51%), Positives = 319/449 (71%), Gaps = 5/449 (1%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P++  +KSYGCQMNVYD+ RM D    +G+      ++ADL++LNTCHIREKA+EKV+S 
Sbjct: 4   PRKLHIKSYGCQMNVYDAQRMVDTLAPEGFVETADANEADLVILNTCHIREKASEKVFSE 63

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR+R +K    +EG ++ + VAGCVAQAEG EI RR+  V+VVVGPQ+Y+ LP+LL +A
Sbjct: 64  LGRLRVMKEEAAREGREMKIAVAGCVAQAEGAEITRRASTVDVVVGPQSYHNLPKLLAKA 123

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           R G   ++T++ ++DKF  L        R RG+++F+T+QEGCDKFCTFCVVPYTRG+E+
Sbjct: 124 RTGAPTIETEFPIQDKFSSLPAPKPAAIRARGISSFVTVQEGCDKFCTFCVVPYTRGMEV 183

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR ++ +VD+ ++L DNGV EITL+GQNVNA+ G+G  G+  +   LL+ L+ + G+VRL
Sbjct: 184 SRPVAAIVDDVKRLADNGVREITLIGQNVNAYHGEGASGQAWSLGRLLHHLASVPGIVRL 243

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           RY+TSHPRD+ D LI+AH D+  +MP++HLPVQSGSDRIL +MNR+H A +Y + I+R R
Sbjct: 244 RYSTSHPRDVDDSLIEAHRDIPAVMPFVHLPVQSGSDRILAAMNRKHAAADYIRTIERFR 303

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE--- 380
              P IA SSDFIVGFPGET+ DF  T+ LV +I YA A+SFKYSPR GTP ++M E   
Sbjct: 304 KASPKIAFSSDFIVGFPGETEQDFSDTLALVTQISYAGAYSFKYSPRPGTPAADMQETDT 363

Query: 381 --QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSV 438
              V   V  ERL  LQ  +  QQ SFN A +GQ +EVL E+  +E G++VGR+ +LQ  
Sbjct: 364 ALAVPAAVMDERLARLQGLIDAQQASFNRAAIGQTVEVLFERAAREPGQIVGRTAYLQPA 423

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGEL 467
            + +    IG ++ V I  ++  +L G L
Sbjct: 424 HVMAPADIIGQVLPVTIDSLERYSLKGRL 452


>gi|77748655|ref|NP_642776.2| (dimethylallyl)adenosine tRNA methylthiotransferase [Xanthomonas
           axonopodis pv. citri str. 306]
 gi|229891228|sp|Q8PJR9|MIAB_XANAC RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
          Length = 484

 Score =  482 bits (1241), Expect = e-134,   Method: Composition-based stats.
 Identities = 200/462 (43%), Positives = 290/462 (62%), Gaps = 17/462 (3%)

Query: 14  VSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHI 72
           V++     +V  + ++K++GCQMN YDS +M D+  + +G E  +  ++AD++++NTC I
Sbjct: 25  VARPSAPAMVRGKLYIKTHGCQMNEYDSAKMADVLAASEGLELTDDPEEADVVLVNTCSI 84

Query: 73  REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT 132
           REKA EKV+S LGR + LK      G  +++ V GCVA  EGE I++R+P V++V GPQT
Sbjct: 85  REKAQEKVFSQLGRWKALKAG----GKPVIIGVGGCVASQEGEAIVKRAPYVDLVFGPQT 140

Query: 133 YYRLPELL-ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCT 191
            +RLPEL+  R   GK  VD  +   +KF+RL        R  G +AF++I EGC K+C+
Sbjct: 141 LHRLPELIRARRESGKSQVDISFPEIEKFDRLP-----EPRAEGPSAFVSIMEGCSKYCS 195

Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK-----CT 246
           FCVVPYTRG E+SR    V+ E  +L   GV EI LLGQNVNA+RG              
Sbjct: 196 FCVVPYTRGEEVSRPFEDVLVEVAQLAAQGVREINLLGQNVNAYRGAYGADAGDAAQYAD 255

Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306
              L+ ++++I+G+ R+R+TTSHP + SD L+ A+ D+  L  YLHLPVQ+GSDRIL +M
Sbjct: 256 LGLLIRTIAQIEGIGRIRFTTSHPLEFSDSLVDAYRDVPQLANYLHLPVQAGSDRILSAM 315

Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
            R +TA E++  I ++R+VRPDI+ISSDFIVGFPGET+ DF  TM L++ +G+ Q+FSF 
Sbjct: 316 KRGYTALEFKSKIRKLRAVRPDISISSDFIVGFPGETEADFEKTMKLIEDVGFDQSFSFV 375

Query: 367 YSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEK 425
           YS R GTP S++ +   E VK  RL  LQ  +     S + + VG +  VL+E    ++ 
Sbjct: 376 YSRRPGTPASDLQDDTPEAVKQARLARLQAHINAHAASISQSMVGSVQRVLVEGPSRRDP 435

Query: 426 GKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
            +L G+S  ++ V        IG  + V IT+   ++L G +
Sbjct: 436 NELTGKSENMRPVNFPGNPRLIGQFVDVLITEAMSNSLRGRI 477


>gi|21231765|ref|NP_637682.1| hypothetical protein XCC2328 [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66768109|ref|YP_242871.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Xanthomonas
           campestris pv. campestris str. 8004]
 gi|188991239|ref|YP_001903249.1| hypothetical protein xccb100_1844 [Xanthomonas campestris pv.
           campestris str. B100]
 gi|81305914|sp|Q4UVS2|MIAB_XANC8 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|81793688|sp|Q8P8B5|MIAB_XANCP RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|229891032|sp|B0RRW2|MIAB_XANCB RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|21113472|gb|AAM41606.1| conserved hypothetical protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66573441|gb|AAY48851.1| conserved hypothetical protein [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|167732999|emb|CAP51197.1| unnamed protein product [Xanthomonas campestris pv. campestris]
          Length = 485

 Score =  482 bits (1241), Expect = e-134,   Method: Composition-based stats.
 Identities = 199/462 (43%), Positives = 288/462 (62%), Gaps = 17/462 (3%)

Query: 14  VSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHI 72
           V +     +V  + ++K++GCQMN YDS +M D+  + +G E  ++ +DAD++++NTC I
Sbjct: 26  VGRPQAPALVRGKLYIKTHGCQMNEYDSAKMADVLAASEGLELTDNPEDADVVLVNTCSI 85

Query: 73  REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT 132
           REKA EKV+S LGR + LK      G  +++ V GCVA  EGE I++R+P V++V GPQT
Sbjct: 86  REKAQEKVFSQLGRWKALKAG----GKPVIIGVGGCVASQEGEAIVKRAPYVDLVFGPQT 141

Query: 133 YYRLPELL-ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCT 191
            +RLPEL+  R   GK  VD  +   +KF+RL        R  G +AF++I EGC K+C+
Sbjct: 142 LHRLPELIRARRESGKSQVDISFPEIEKFDRLP-----EPRADGPSAFVSIMEGCSKYCS 196

Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-----GLDGEKCT 246
           FCVVPYTRG E+SR    V+ E  +L   GV EI LLGQNVNA+RG      G   +   
Sbjct: 197 FCVVPYTRGEEVSRPFEDVLVEVAQLAAQGVREINLLGQNVNAYRGAYGADAGEPAQYAD 256

Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306
              L+ ++++I G+ R+R+TTSHP + SD L+ A+ D+  L  YLHLPVQ+GSDRIL +M
Sbjct: 257 LGLLIRTIAQIDGIGRIRFTTSHPLEFSDSLVDAYRDVPQLANYLHLPVQAGSDRILSAM 316

Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
            R +TA E++  I ++R+VRPDI+ISSDFIVGFPGETD DF  TM L++ +G+ Q+FSF 
Sbjct: 317 KRGYTALEFKSKIRKLRAVRPDISISSDFIVGFPGETDADFDKTMKLIEDVGFDQSFSFI 376

Query: 367 YSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK- 425
           YS R GTP S++ +   + VK  RL  LQ  +       +   VG +  VL+E   +   
Sbjct: 377 YSRRPGTPASDLEDDTPDAVKQARLARLQAHINAHAAGISQRMVGSVQRVLVEGPSRRDA 436

Query: 426 GKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
            +L G++  ++ V        +G  + V IT+   ++L G +
Sbjct: 437 NELTGKTENMRPVNFPGNPRLVGQFVDVLITEALSNSLRGRI 478


>gi|290476182|ref|YP_003469082.1| tRNA methylthiolation protein [Xenorhabdus bovienii SS-2004]
 gi|289175515|emb|CBJ82318.1| involved in methylthiolation of isopentenylated A37 derivatives in
           tRNA, Fe-S protein [Xenorhabdus bovienii SS-2004]
          Length = 476

 Score =  482 bits (1241), Expect = e-134,   Method: Composition-based stats.
 Identities = 195/447 (43%), Positives = 289/447 (64%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ ++K++GCQMN YDS +M D+  +  GY+  +  ++AD+++LNTC IREKA EKV+  
Sbjct: 5   KKLYIKTWGCQMNEYDSSKMADLLETTHGYQLTDVAEEADILLLNTCSIREKAQEKVFHQ 64

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK+       ++++ V GCVA  EG+ I +R+P V+++ GPQT +RLPE++   
Sbjct: 65  LGRWKGLKDK----NPEIIIGVGGCVASQEGDFIRQRAPSVDIIFGPQTLHRLPEMINHV 120

Query: 144 R-FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           +     +VD  +   +KF+R+        R  G +AF++I EGC+K+CTFCVVPYTRG E
Sbjct: 121 KGTHSPIVDISFPEIEKFDRMP-----EPRAEGPSAFVSIMEGCNKYCTFCVVPYTRGEE 175

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR    ++ E  +L   GV ++ LLGQNVNA+RG   DG+ CTF++LL  ++ I G+ R
Sbjct: 176 VSRPCDDILFEIAQLAAQGVRDVNLLGQNVNAYRGAAFDGDICTFAELLRLVAAIDGIDR 235

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP + +D +I  + D   L+ YLHLPVQSGSDRIL  M R HTA EY+ II R+
Sbjct: 236 IRFTTSHPIEFTDDIIAVYEDTPELVSYLHLPVQSGSDRILTQMKRAHTALEYKGIIRRL 295

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R  RPDI ISSDFI+GFPGET DDF  TM L+  + +  +FSF YS R GTP +++ + V
Sbjct: 296 RKARPDILISSDFIIGFPGETQDDFEKTMQLIADVNFDMSFSFIYSARPGTPAADLPDDV 355

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441
            E  K +RL  LQ+++ +Q +SF+ A VG    +L+E   ++   +L GR+   + V   
Sbjct: 356 SEEEKKQRLYLLQQRINQQAMSFSRAMVGSTQRILVEGTSRKNIMELSGRTENNRVVNFE 415

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                IG  +   I DV  ++L G+++
Sbjct: 416 GTPDMIGKFVDAEIVDVYANSLRGKVI 442


>gi|146310845|ref|YP_001175919.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Enterobacter sp. 638]
 gi|229890545|sp|A4W838|MIAB_ENT38 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|145317721|gb|ABP59868.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Enterobacter sp. 638]
          Length = 474

 Score =  482 bits (1241), Expect = e-134,   Method: Composition-based stats.
 Identities = 196/449 (43%), Positives = 287/449 (63%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++  +K++GCQMN YDS +M D+  +  GYE     ++AD+++LNTC IREKA EKV+
Sbjct: 1   MTKKLHIKTWGCQMNEYDSSKMADLLNATHGYELTELAEEADVLLLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR + LK    K+  DL++ V GCVA  EG+ I  RSP V++V GPQT +RLPE++ 
Sbjct: 61  HLLGRWKLLK----KKNPDLIIGVGGCVASQEGKLIRTRSPYVDIVFGPQTLHRLPEMIN 116

Query: 142 RARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
             R  +  VVD  +   +KF+RL        R  G +AF++I EGC+K+CT+CVVPYTRG
Sbjct: 117 SVRGDRSPVVDVSFPEIEKFDRLP-----EPRADGPSAFVSIMEGCNKYCTYCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR    ++ E  +L   GV E+ LLGQNVNAWRG+  DG   TF++LL  ++ I G+
Sbjct: 172 EEVSRPCDDILFEVAQLAAQGVREVNLLGQNVNAWRGENYDGSIGTFAELLRLVAAIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+TTSHP + +D +I  + D   L+ +LHLPVQ GSDR+L  M R HT  EY+ II 
Sbjct: 232 DRVRFTTSHPIEFTDDIIDVYRDTPELVSFLHLPVQCGSDRVLNLMGRTHTVLEYKAIIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R  RPDI ISSDFIVGFPGET DDF  TM L+ +I +  +FSF +S R GTP ++M++
Sbjct: 292 KLREARPDIQISSDFIVGFPGETTDDFERTMKLIGEINFDVSFSFIFSARPGTPAADMVD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439
            V E  K +RL  LQ+++ +Q  +++   +G    +L+E   ++   +L GR+   + V 
Sbjct: 352 DVPEEEKKQRLYILQERINQQVTAWSRRMLGTTQRILVEGTSRKSVMQLSGRTENNRVVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG  + + I +V  +++ G++V
Sbjct: 412 FEGTPDMIGKFVDIEILEVLTNSMRGKVV 440


>gi|84624263|ref|YP_451635.1| hypothetical protein XOO_2606 [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|123752741|sp|Q2P266|MIAB_XANOM RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|84368203|dbj|BAE69361.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae MAFF
           311018]
          Length = 484

 Score =  482 bits (1241), Expect = e-134,   Method: Composition-based stats.
 Identities = 200/462 (43%), Positives = 291/462 (62%), Gaps = 17/462 (3%)

Query: 14  VSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHI 72
           V++     +V  + ++K++GCQMN YDS +M D+  + +G E  ++ ++AD++++NTC I
Sbjct: 25  VARPSAPAVVRGKLYIKTHGCQMNEYDSAKMADVLAASEGLELTDNPEEADVVLVNTCSI 84

Query: 73  REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT 132
           REKA EKV+S LGR + LK      G  +++ V GCVA  EGE I++R+P V++V GPQT
Sbjct: 85  REKAQEKVFSQLGRWKALKAG----GKPVIIGVGGCVASQEGEAIVKRAPYVDLVFGPQT 140

Query: 133 YYRLPELL-ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCT 191
            +RLPEL+  R   GK  VD  +   +KF+RL        R  G +AF++I EGC K+C+
Sbjct: 141 LHRLPELIRARRESGKSQVDISFPEIEKFDRLP-----EPRAEGPSAFVSIMEGCSKYCS 195

Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK-----CT 246
           FCVVPYTRG E+SR    V+ E  +L   GV EI LLGQNVNA+RG              
Sbjct: 196 FCVVPYTRGEEVSRPFEDVLVEVAQLAAQGVREINLLGQNVNAYRGAYGADAGDAAQYAD 255

Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306
              L+ ++++I+G+ R+R+TTSHP + SD L+ A+ D+  L  YLHLPVQ+GSDRIL +M
Sbjct: 256 LGLLIRTIAQIEGIGRIRFTTSHPLEFSDSLVDAYRDVPQLANYLHLPVQAGSDRILSAM 315

Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
            R +TA E++  I ++R+VRPDI+ISSDFIVGFPGET+ DF  TM L++ +G+ Q+FSF 
Sbjct: 316 KRGYTALEFKSRIRKLRAVRPDISISSDFIVGFPGETEADFEKTMKLIEDVGFDQSFSFV 375

Query: 367 YSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEK 425
           YS R GTP S++ +   E VK  RL  LQ  +     S + + VG +  VL+E    ++ 
Sbjct: 376 YSRRPGTPASDLQDDTPETVKQARLARLQAHISAHAASISQSMVGSVQRVLVEGPSRRDP 435

Query: 426 GKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
            +L G+S  ++ V        IG  + V IT+   ++L G +
Sbjct: 436 NELTGKSENMRPVNFPGNPRLIGQFVDVLITEAMSNSLRGRI 477


>gi|166711743|ref|ZP_02242950.1| hypothetical protein Xoryp_09860 [Xanthomonas oryzae pv. oryzicola
           BLS256]
          Length = 484

 Score =  482 bits (1241), Expect = e-134,   Method: Composition-based stats.
 Identities = 201/462 (43%), Positives = 290/462 (62%), Gaps = 17/462 (3%)

Query: 14  VSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHI 72
           V++     +V  + ++K++GCQMN YDS +M D+  + +G E  +  ++AD++++NTC I
Sbjct: 25  VARPCAPAVVRGKLYIKTHGCQMNEYDSAKMADVLAASEGLELTDDPEEADVVLVNTCSI 84

Query: 73  REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT 132
           REKA EKV+S LGR + LK      G  +++ V GCVA  EGE I++R+P V++V GPQT
Sbjct: 85  REKAQEKVFSQLGRWKALKAG----GRPVIIGVGGCVASQEGEAIVKRAPHVDLVFGPQT 140

Query: 133 YYRLPELL-ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCT 191
            +RLPEL+  R   GK  VD  +   +KF+RL        R  G +AF++I EGC K+C+
Sbjct: 141 LHRLPELIRARRESGKSQVDISFPEIEKFDRLP-----EPRAEGPSAFVSIMEGCSKYCS 195

Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK-----CT 246
           FCVVPYTRG E+SR    V+ E  +L   GV EI LLGQNVNA+RG              
Sbjct: 196 FCVVPYTRGEEVSRPFEDVLVEVAQLAAQGVREINLLGQNVNAYRGAYGADAGDAAQYAD 255

Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306
              L+ ++++I+G+ R+R+TTSHP + SD L+ A+ D+  L  YLHLPVQ+GSDRIL +M
Sbjct: 256 LGLLIRTIAQIEGIGRIRFTTSHPLEFSDSLVDAYRDVPQLANYLHLPVQAGSDRILSAM 315

Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
            R +TA E++  I ++R+VRPDI+ISSDFIVGFPGET+ DF  TM L++ +G+ Q+FSF 
Sbjct: 316 KRGYTALEFKSRIRKLRAVRPDISISSDFIVGFPGETEADFEKTMKLIEDVGFDQSFSFV 375

Query: 367 YSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEK 425
           YS R GTP S++ +   E VK  RL  LQ  +     S + + VG +  VL+E    ++ 
Sbjct: 376 YSRRPGTPASDLQDDTPETVKQARLARLQAHISAHAASISQSMVGSVQRVLVEGPSRRDP 435

Query: 426 GKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
            +L GRS  ++ V        IG  + V IT+   ++L G +
Sbjct: 436 NELTGRSENMRPVNFPGNPRLIGQFVDVLITEAMSNSLRGRI 477


>gi|310766988|gb|ADP11938.1| Putative tRNA-thiotransferase [Erwinia sp. Ejp617]
          Length = 480

 Score =  482 bits (1241), Expect = e-134,   Method: Composition-based stats.
 Identities = 198/455 (43%), Positives = 290/455 (63%), Gaps = 12/455 (2%)

Query: 17  IVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREK 75
           + +   + ++  +K++GCQMN YDS +M D+  S  GY      +DAD+++LNTC IREK
Sbjct: 1   MTNGKPMTKKLHIKTWGCQMNEYDSSKMADLLNSTHGYTLTEQAEDADVLLLNTCSIREK 60

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135
           A EKV+  LGR + LK +      D+++ V GCVA  EG +I +R+  V++V GPQT +R
Sbjct: 61  AQEKVFGLLGRWKKLKEA----NPDVIIGVGGCVASQEGAQIRQRASCVDIVFGPQTLHR 116

Query: 136 LPELLERARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCV 194
           LPE++ R R  K  VVD  +   +KF+R+        R  G TAF++I EGC+K+CTFCV
Sbjct: 117 LPEMINRVRGTKSPVVDVSFPEIEKFDRMP-----EPRANGPTAFVSIMEGCNKYCTFCV 171

Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL 254
           VPYTRG E+SR    V+ E  +L   GV E+ LLGQNVNA+RG   DG  C+F++LL  +
Sbjct: 172 VPYTRGEEVSRPADDVLFEVAQLAAQGVREVNLLGQNVNAYRGATYDGGICSFAELLRLV 231

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
           + I G+ R+R+TTSHP + +D +I+ + D   L+ +LHLPVQSG+DRIL  M R HTA E
Sbjct: 232 ATIDGIDRIRFTTSHPIEFTDDIIEVYRDTPELVSFLHLPVQSGADRILTLMKRAHTALE 291

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
           Y+ II ++ + RPDI ISSDFI+GFPGE   DF  TM LV +I +  ++SF YS R GTP
Sbjct: 292 YKAIIRKLLAARPDIQISSDFIIGFPGENQADFEQTMKLVGEINFDTSYSFIYSARPGTP 351

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSP 433
            +++ + V E  K +RL  LQ ++ +Q ++++   +G +  +L+E   ++   +L GR+ 
Sbjct: 352 AADLPDDVSEEEKKQRLYILQDRISQQAMAWSRRKLGTVQRILVEGTSRKSVMELAGRTE 411

Query: 434 WLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
             + V       +IG  + V ITDV  ++L G L+
Sbjct: 412 CNRVVNFEGSPEHIGKFVDVEITDVYANSLRGVLL 446


>gi|254452609|ref|ZP_05066046.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Octadecabacter
           antarcticus 238]
 gi|198267015|gb|EDY91285.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Octadecabacter
           antarcticus 238]
          Length = 443

 Score =  482 bits (1241), Expect = e-134,   Method: Composition-based stats.
 Identities = 238/455 (52%), Positives = 320/455 (70%), Gaps = 13/455 (2%)

Query: 13  MVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHI 72
           M     +    P++ F+K+YGCQMNVYDS RM +   +QGY   +   DAD+I+LNTCHI
Sbjct: 1   MSDSDSNAGPPPKKLFIKTYGCQMNVYDSERMAESLGTQGYVTTDVAADADMILLNTCHI 60

Query: 73  REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT 132
           REKAAEK+YS LGR++ LK     +  DL + VAGCVAQAEG EI+RR P+V++VVGPQ+
Sbjct: 61  REKAAEKMYSELGRLKPLKA----DKPDLKIGVAGCVAQAEGAEIIRRQPMVDLVVGPQS 116

Query: 133 YYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTF 192
           Y+RLP + +    G++ +DTD+  +DKF+ L         KRG TAFLT+QEGCDKFC F
Sbjct: 117 YHRLPAMEQAVARGEKALDTDFPEDDKFDTLK---SRSKAKRGPTAFLTVQEGCDKFCAF 173

Query: 193 CVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLY 252
           CVVPYTRG E SR   +++ EA +L++ GV EITLLGQNVNA+ G          + L++
Sbjct: 174 CVVPYTRGAEFSRPADRIIREAHELVEAGVREITLLGQNVNAYHGHAG-----GLAGLIW 228

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
            L ++ GL R+R+TTSHP DM D LI AHG  D LMPYLHLPVQSGSD++LK+MNR+HT 
Sbjct: 229 DLDKVDGLKRIRFTTSHPNDMDDALIDAHGTCDKLMPYLHLPVQSGSDKVLKAMNRKHTR 288

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
            +Y  +I+RIR+ RPD+ +S DFIVGFPGET+ DF  TMDLV  +GY QA+SFKYS R G
Sbjct: 289 DQYFALIERIRAARPDLLLSGDFIVGFPGETEADFEDTMDLVRTVGYGQAYSFKYSTRPG 348

Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS 432
           TP +    QVDE+VK ERL  LQ  L +QQ +   + +G+ ++VL EK G+E G+++G+S
Sbjct: 349 TPAAERA-QVDEDVKLERLHRLQALLGDQQRAIQASMIGRTVKVLFEKKGRESGQMIGKS 407

Query: 433 PWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
            +L +V  ++ +  IGD+ KV+I   + ++L GE+
Sbjct: 408 EYLHAVFADTTDVAIGDLRKVKIVKSESNSLGGEI 442


>gi|85374526|ref|YP_458588.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Erythrobacter
           litoralis HTCC2594]
 gi|123409590|sp|Q2N950|MIAB_ERYLH RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|84787609|gb|ABC63791.1| 2-methylthioadenine synthetase [Erythrobacter litoralis HTCC2594]
          Length = 446

 Score =  482 bits (1240), Expect = e-134,   Method: Composition-based stats.
 Identities = 235/451 (52%), Positives = 311/451 (68%), Gaps = 10/451 (2%)

Query: 18  VDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA 77
           +     P+ + VKS+GCQMNVYD  RM +M   +G E     +DADL+VLNTCHIREKA 
Sbjct: 1   MKPTHSPKTYRVKSFGCQMNVYDGERMAEMLDEKGIEPAPEGEDADLVVLNTCHIREKAV 60

Query: 78  EKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLP 137
           +KVYS +GR+   K          ++ VAGCVAQAEGEEI+ R+P V++VVGPQ Y+RLP
Sbjct: 61  DKVYSDIGRLTKGKTQTK----APMIAVAGCVAQAEGEEIMARAPAVSMVVGPQAYHRLP 116

Query: 138 ELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197
            +++ A  GKR  DTD   + KF  L        RK   +AFLTIQEGCDKFCT+CVVPY
Sbjct: 117 GMIDAAVAGKRSTDTDMPADAKFAALP-----KRRKSAPSAFLTIQEGCDKFCTYCVVPY 171

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257
           TRG EISR  S ++DEA+KL++ G  EITLLGQNV+AW G+   G     + L+  L++ 
Sbjct: 172 TRGAEISRPFSALIDEAKKLVEAGAKEITLLGQNVSAWTGEDAKGRALGMAGLIRELAKD 231

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
             L R+RYTTSHP DM D LI  HG+++ LMPYLHLPVQSG+DR+LK+MNR HTA  Y +
Sbjct: 232 PDLKRVRYTTSHPADMDDELIATHGEVEKLMPYLHLPVQSGNDRVLKAMNRSHTAESYLR 291

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
           +++R R+ RPD+A+S DFIVGFPGET+ +F  T+ +VD++ YAQA+SFKYSPR GTP + 
Sbjct: 292 LLERFRAARPDLALSGDFIVGFPGETEAEFEDTLKIVDEVRYAQAYSFKYSPRPGTPAAT 351

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQS 437
           M  QV + V  ERL  LQ  L   Q +FN   VG+  EVL+E+ GK  G+ +G+SPWLQS
Sbjct: 352 MERQVPKEVMDERLQRLQAALNRDQAAFNAGSVGRTCEVLVERTGKHPGQWLGKSPWLQS 411

Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           V  +  +  IGD+++V + +   ++L G+L+
Sbjct: 412 VWFDG-DVAIGDLVQVELVEAGPNSLAGQLL 441


>gi|261343533|ref|ZP_05971178.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Providencia rustigianii
           DSM 4541]
 gi|282568682|gb|EFB74217.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Providencia rustigianii
           DSM 4541]
          Length = 476

 Score =  482 bits (1240), Expect = e-134,   Method: Composition-based stats.
 Identities = 194/447 (43%), Positives = 291/447 (65%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ ++K++GCQMN YDS +M  +  S  GY+  +  ++ADL++LNTC IREKA EKV+  
Sbjct: 5   KKLYMKTWGCQMNEYDSSKMVSLLESTHGYQLTDIAEEADLLLLNTCSIREKAQEKVFHQ 64

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR +  K+       D+++ V GCVA  EG+ I +R+P V++V GPQT +RLPE++ + 
Sbjct: 65  LGRWKFFKDK----KPDIIIGVGGCVASQEGDFIRQRAPCVDIVFGPQTLHRLPEMINQI 120

Query: 144 RFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           +  +  ++D  +   +KF+ L        R  G TAF++I EGC+K+CTFCVVPYTRG E
Sbjct: 121 QGNRSPIIDISFPEIEKFDNLP-----EPRAEGPTAFVSIMEGCNKYCTFCVVPYTRGEE 175

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR    ++ E  +L   GV E+ LLGQNVNA+RG   DGE C+F++LL  ++ I G+ R
Sbjct: 176 VSRPCDDILFEIAQLAAQGVREVNLLGQNVNAYRGATFDGEICSFAELLRLVASIDGIDR 235

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP + +D +I+ + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II ++
Sbjct: 236 VRFTTSHPIEFTDDIIEVYRDTPELVSFLHLPVQSGSDRILTMMKRAHTALEYKAIIRKL 295

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R  RP I ISSDFIVGFPGET +DF  TM L+  + +  ++SF YS R GTP +++ + V
Sbjct: 296 REARPGILISSDFIVGFPGETTEDFEKTMKLIADVNFDMSYSFVYSARPGTPAADLPDDV 355

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441
            E+ K +RL  LQ+++ +Q +SF+ A +G +  +L+E   ++   +L GR+   + V   
Sbjct: 356 TEDEKKQRLYLLQQRINQQAMSFSRAMLGTVQRILVEGTSRKNVMELSGRTENNRVVNFE 415

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                IG  + V I DV  ++L G+++
Sbjct: 416 GTPDMIGKFVDVEIVDVYTNSLRGKVI 442


>gi|319408022|emb|CBI81676.1| bifunctional enzyme [Bartonella schoenbuchensis R1]
          Length = 458

 Score =  482 bits (1240), Expect = e-134,   Method: Composition-based stats.
 Identities = 259/448 (57%), Positives = 336/448 (75%), Gaps = 2/448 (0%)

Query: 21  CIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKV 80
            I PQ+ F+K+YGCQMN YDS RM D   ++GY    + +DADLI++NTCHIREKAAEK+
Sbjct: 11  SISPQKVFIKTYGCQMNTYDSQRMNDSLSAEGYVTTQTPNDADLILVNTCHIREKAAEKL 70

Query: 81  YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140
           YS LGR+R ++  R  +   L++ V GCVAQAEG+EILRR+P V++VVGPQ Y+RLPELL
Sbjct: 71  YSDLGRLRMIRQKRAPDKP-LIIGVTGCVAQAEGDEILRRAPTVDLVVGPQMYHRLPELL 129

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           ++A+ GK++V+T+Y+VEDKF  L   +    +KRGV+AFLTIQEGCDKFCTFCVVPYTRG
Sbjct: 130 KQAKQGKKIVETNYAVEDKFTHLPPHNKHAVQKRGVSAFLTIQEGCDKFCTFCVVPYTRG 189

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E SR + Q+  EA +LI+ GV EITLLGQNVN W G+  +G+     DLLY L+++ GL
Sbjct: 190 AETSRPVEQITHEAIQLIEAGVKEITLLGQNVNGWHGQSANGKTWRLGDLLYHLAKLDGL 249

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            RLRYTTSHPRDM D LI AH DLD+LMPYLHLPVQSGSDRILK+MNR+H +  Y ++I+
Sbjct: 250 KRLRYTTSHPRDMDDSLIAAHRDLDMLMPYLHLPVQSGSDRILKAMNRQHKSIHYLKLIE 309

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           +IR+ RPDIA S DFIVGFPGETD+DF  T+ L+ ++GY+ A+SFKYSPR GTPG+ M  
Sbjct: 310 KIRTARPDIAFSGDFIVGFPGETDEDFEETIKLIKQVGYSSAYSFKYSPRPGTPGATMKN 369

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440
            VDE VK  RL  LQ  L +QQ +F  + +GQ   +LIEK G+  G++VGRSPWL  VV+
Sbjct: 370 HVDETVKNSRLQRLQALLLDQQHTFLRSKIGQKTNILIEKSGRHLGQMVGRSPWLLPVVV 429

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
           ++   + G I+++ I +   ++  GE V
Sbjct: 430 DA-QVSTGTIMEIHIKNASPNSFVGEKV 456


>gi|37525279|ref|NP_928623.1| tRNA-methylthiotransferase MiaB protein [Photorhabdus luminescens
           subsp. laumondii TTO1]
 gi|81416679|sp|Q7MB63|MIAB_PHOLL RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|36784706|emb|CAE13606.1| tRNA-methylthiotransferase MiaB protein [Photorhabdus luminescens
           subsp. laumondii TTO1]
          Length = 476

 Score =  481 bits (1239), Expect = e-134,   Method: Composition-based stats.
 Identities = 196/447 (43%), Positives = 294/447 (65%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ ++K++GCQMN YDS +M D+  S  GY+  +  ++AD+++LNTC IREKA EKV+  
Sbjct: 5   KKLYIKTWGCQMNEYDSSKMADLLESTHGYQLTDVAEEADILLLNTCSIREKAQEKVFHQ 64

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR +NLK+       DL++ V GCVA  EG+ I +R+  V+++ GPQT +RLPE++ + 
Sbjct: 65  LGRWKNLKD----TNPDLIIGVGGCVASQEGDFIRQRAQCVDIIFGPQTLHRLPEMINQV 120

Query: 144 RFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           +  +  VVD  +   +KF+RL        R  G +AF++I EGC+K+CTFCVVPYTRG E
Sbjct: 121 KGTRSPVVDISFPEIEKFDRLP-----EPRAEGPSAFVSIMEGCNKYCTFCVVPYTRGEE 175

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR    V+ E  +L   GV E+ LLGQNVNA+RG   DG+ C+F++L+  ++ I G+ R
Sbjct: 176 VSRPCDDVLFEIAQLAAQGVREVNLLGQNVNAYRGATYDGDICSFAELIRLVAAIDGIDR 235

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP + +D +I  + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II ++
Sbjct: 236 IRFTTSHPIEFTDDIIAVYEDTPELVSFLHLPVQSGSDRILTLMKRAHTALEYKSIIRKL 295

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R  RPDI ISSDFI+GFPGET DDF  TM L+  + +  ++SF YS R GTP +++ + V
Sbjct: 296 RKARPDILISSDFIIGFPGETQDDFEKTMKLIADVNFDMSYSFIYSARPGTPAADLPDDV 355

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441
            E  K +RL  LQ+++ +Q +S++ A +G +  +L+E   ++   +L GR+   + V   
Sbjct: 356 SEEEKKQRLYLLQQRINQQAMSYSRAMLGSVQRILVEGTSRKNVMELSGRTENNRVVNFE 415

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
            +   IG  + V I DV  ++L G+++
Sbjct: 416 GQPDMIGKFVDVEIVDVYANSLRGKVI 442


>gi|328472484|gb|EGF43347.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Vibrio
           parahaemolyticus 10329]
          Length = 474

 Score =  481 bits (1239), Expect = e-134,   Method: Composition-based stats.
 Identities = 199/449 (44%), Positives = 285/449 (63%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++  +K++GCQMN YDS +M D+   + GYE     ++AD+++LNTC IREKA EKV+
Sbjct: 1   MSKKLLIKTWGCQMNEYDSSKMADLLNAANGYELTEEPEEADVLLLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR + LK+ +      +   V    A  EG+ I  R+P V+V+ GPQT +RLPE+++
Sbjct: 61  HQLGRWKTLKDKKPGVVIGVGGCV----ATQEGDHIRERAPYVDVIFGPQTLHRLPEMIK 116

Query: 142 RARFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           +++     V+D  +   +KF+RL        R  G TAF++I EGC K+CT+CVVPYTRG
Sbjct: 117 QSQTDDAPVMDISFPEIEKFDRLP-----EPRAEGATAFVSIMEGCSKYCTYCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR +  V+ E  +L + GV E+ LLGQNVNA+RG   DGE C+F++LL  ++ I G+
Sbjct: 172 EEVSRPMDDVLFEIAQLAEQGVREVNLLGQNVNAYRGPMHDGEICSFAELLRLVASIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+TTSHP + +D +I  + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II 
Sbjct: 232 DRIRFTTSHPLEFTDDIIAVYEDTPELVSFLHLPVQSGSDRILTMMKRPHTAIEYKSIIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R  RPDI ISSDFIVGFPGETD DF+ TM L+  + +  +FSF +SPR GTP ++   
Sbjct: 292 KLRKARPDIQISSDFIVGFPGETDKDFQDTMKLIKDVDFDMSFSFIFSPRPGTPAADYPC 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439
            + E VK ERL  LQ+ +  Q + ++   +G    VL+E   K+   +L  R+   + V 
Sbjct: 352 DIPEQVKKERLYELQQTINAQAMRYSRLMLGTEQRVLVEGPSKKNLMELRARTENNRVVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG  + V+ITDV  ++L GELV
Sbjct: 412 FEGSADLIGQFVDVKITDVFANSLRGELV 440


>gi|114046575|ref|YP_737125.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Shewanella sp.
           MR-7]
 gi|123030839|sp|Q0HXT7|MIAB_SHESR RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|113888017|gb|ABI42068.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Shewanella sp. MR-7]
          Length = 474

 Score =  481 bits (1239), Expect = e-134,   Method: Composition-based stats.
 Identities = 195/449 (43%), Positives = 288/449 (64%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++  +K++GCQMN YDS +M D+    QGY      ++AD+++LNTC IREKA EKV+
Sbjct: 1   MSKKLHIKTWGCQMNEYDSSKMADLLGEYQGYTLTEEAEEADILLLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR + LK+       DL++ V GCVA  EG+ I  R+  V+++ GPQT +RLP+++E
Sbjct: 61  HQLGRWKTLKDK----NPDLIIGVGGCVASQEGKAIKDRAHCVDIIFGPQTLHRLPDMIE 116

Query: 142 RARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           + R G++ V+D  +   +KF+RL        R  G TAF++I EGC K+C+FCVVPYTRG
Sbjct: 117 QVRRGEKAVIDVSFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCSKYCSFCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR    ++ E  +L + GV E+ LLGQNVNA+RG   DG  CTF++LL  ++ I G+
Sbjct: 172 EEVSRPSDDIILEIAQLAEQGVREVNLLGQNVNAYRGATHDGGICTFAELLRYVAAIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+TTSHP + +  +I  + D   L+ +LHLPVQSGSDRIL +M R H A EY+ II 
Sbjct: 232 DRIRFTTSHPIEFTQDIIDVYEDTPELVSFLHLPVQSGSDRILTAMKRGHMAIEYKSIIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           R+R  RPDI ISSDFI+GFPGET +DF  TM L++ + +  +FSF YS R GTP +++ +
Sbjct: 292 RLRKARPDIQISSDFIIGFPGETKEDFADTMKLIEDVAFDHSFSFIYSARPGTPAADLPD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVV 439
            VD   K +RL  LQ ++ +Q + ++   +G +  +L+E    K   +L GR+   + V 
Sbjct: 352 DVDMEEKKQRLAILQDRITQQAMRYSRHMMGTVQRILVEGPSVKNPMELRGRTENNRVVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
              +  +IG  + V I DV  ++L G+ +
Sbjct: 412 FEGQPKHIGSFVDVEIVDVYTNSLRGKFI 440


>gi|269139970|ref|YP_003296671.1| rRNA modification protein [Edwardsiella tarda EIB202]
 gi|267985631|gb|ACY85460.1| rRNA modification protein [Edwardsiella tarda EIB202]
 gi|304559803|gb|ADM42467.1| tRNA-i(6)A37 methylthiotransferase [Edwardsiella tarda FL6-60]
          Length = 474

 Score =  481 bits (1239), Expect = e-134,   Method: Composition-based stats.
 Identities = 198/449 (44%), Positives = 290/449 (64%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++  +K++GCQMN YDS ++ D+  S  G E  ++ +DAD+++LNTC IREKA EKV+
Sbjct: 1   MTKKLHIKTWGCQMNEYDSSKIADLLGSTHGLELTDNAEDADVLLLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR + LK +      DL++ V GCVA  EGE I  R+  V+++ GPQT +RLPE+++
Sbjct: 61  HQLGRWKMLKEA----KPDLIIGVGGCVASQEGEHIRERASCVDIIFGPQTLHRLPEMID 116

Query: 142 RARFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
            AR     VVD  +   +KF+RL        R  G TAF++I EGC+K+CT+CVVPYTRG
Sbjct: 117 SARSSHGPVVDVSFPEIEKFDRLP-----EPRADGATAFVSIMEGCNKYCTYCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR    V+ E  +L   GV E+ LLGQNVNA+RG   DG  C+F++LL  ++ I G+
Sbjct: 172 AEVSRPCDDVLFEIAQLAAQGVREVNLLGQNVNAYRGATFDGGICSFAELLRLVAAIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+TTSHP + SD +I  + D   L+ +LHLPVQSGSDR+L  M R HTA EY+ II 
Sbjct: 232 DRIRFTTSHPIEFSDDIIAVYEDTPELVSFLHLPVQSGSDRVLNLMKRTHTALEYKAIIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R  RPDI ISSDFIVGFPGET  DF  TM L+ ++ +  ++SF +S R GTP ++M++
Sbjct: 292 KLRRARPDIQISSDFIVGFPGETQQDFEQTMQLIAEVDFDMSYSFIFSARPGTPAADMVD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439
            V E  K +RL  LQ+++ +Q + ++   +G +  +L+E   ++   +L GR+   + V 
Sbjct: 352 DVAEEEKKQRLYILQERINQQAMRYSRRMLGTVQRILVEGTSRKNVMELSGRTENNRVVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
              +   IG  + V IT+V  ++L G +V
Sbjct: 412 FAGQPEMIGRFVDVEITEVLPNSLRGVVV 440


>gi|271499717|ref|YP_003332742.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Dickeya dadantii Ech586]
 gi|270343272|gb|ACZ76037.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Dickeya dadantii Ech586]
          Length = 476

 Score =  481 bits (1239), Expect = e-134,   Method: Composition-based stats.
 Identities = 196/449 (43%), Positives = 288/449 (64%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++  +K++GCQMN YDS ++ D+  S  GY+  +  ++AD+++LNTC IREKA EKV+
Sbjct: 3   MTKKLHIKTWGCQMNEYDSSKIADLLESTHGYQLTDVAEEADILLLNTCSIREKAQEKVF 62

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR + LK+       +L++ V GCVA  EGE I  R+  V+V+ GPQT +RLPE++ 
Sbjct: 63  HQLGRWKTLKD----VNPNLIIGVGGCVASQEGEHIRDRAHYVDVIFGPQTLHRLPEMIN 118

Query: 142 RARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
             +  +  +VD  +   +KF+RL        R  G TAF++I EGC+K+CTFCVVPYTRG
Sbjct: 119 HVQGTRSPIVDISFPEVEKFDRLP-----EPRADGPTAFVSIMEGCNKYCTFCVVPYTRG 173

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR +  V+ E  +L   GV E+ LLGQNVNA+RG   D + C+F++LL  ++ I G+
Sbjct: 174 EEVSRPVDDVLFEIAQLAAQGVREVNLLGQNVNAYRGATHDDDICSFAELLRLVAAIDGI 233

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+ TSHP + +D +I  + D   L+ +LHLPVQSGSDRIL  M RRHTA EY+ II 
Sbjct: 234 DRIRFITSHPIEFTDDIISVYEDTPELVSFLHLPVQSGSDRILTMMKRRHTALEYKAIIR 293

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R  RP I ISSDFIVGFPGET +DF  TM L+  + +  +FSF YSPR GTP ++M++
Sbjct: 294 KLRKARPAIQISSDFIVGFPGETQEDFEQTMQLIADVDFDMSFSFIYSPRPGTPAADMVD 353

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439
            V E  K +RL  LQ+++ +Q + ++   +G +  +L+E   ++   +L GR+   + V 
Sbjct: 354 DVTEEEKKQRLYILQERINQQAMQYSRRMMGTVQRILVEGTSRKSVMELSGRTENNRVVN 413

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG  + V I DV  ++L G +V
Sbjct: 414 FEGTPDMIGKFVDVEIVDVYPNSLRGVVV 442


>gi|89069602|ref|ZP_01156941.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Oceanicola granulosus
           HTCC2516]
 gi|89044800|gb|EAR50900.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Oceanicola granulosus
           HTCC2516]
          Length = 437

 Score =  481 bits (1239), Expect = e-134,   Method: Composition-based stats.
 Identities = 244/445 (54%), Positives = 313/445 (70%), Gaps = 13/445 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
            P++ F+K+YGCQMNVYDS RM +    +GY      ++AD+I+LNTCHIREKAAEKVYS
Sbjct: 5   APKKLFIKTYGCQMNVYDSERMAEALGGRGYVETQVAEEADMILLNTCHIREKAAEKVYS 64

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            LGR++ LK        DL + VAGCVAQAEGEEI+RR P+V++VVGPQ+Y+RLP +   
Sbjct: 65  ELGRLKPLKAE----KPDLKIGVAGCVAQAEGEEIMRRQPLVDLVVGPQSYHRLPAMDAA 120

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
              G + +DTD+  EDKF  L+        +RG TAFLT+QEGCDKFC FCVVPYTRG E
Sbjct: 121 LATGGKALDTDFPAEDKFSGLAARPRA---QRGPTAFLTVQEGCDKFCAFCVVPYTRGAE 177

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR   +VVDEAR L++ GV EITLLGQNVNA+      G +   + L+ +L+ I GL R
Sbjct: 178 VSRPAERVVDEARALVEAGVREITLLGQNVNAYH-----GHEGGLAGLVRTLAAIDGLER 232

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +RYTTSHP DM D LI AHGD   LMPYLHLPVQSGSDRILK+MNR+HTA  Y ++I+R+
Sbjct: 233 IRYTTSHPNDMDDALIAAHGDCPELMPYLHLPVQSGSDRILKAMNRKHTAEAYLRLIERL 292

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R  RPD+A+S DFIVGFPGET+ DF  TM LV+ +GYAQA+SFKYS R GTP +    Q+
Sbjct: 293 RDARPDLALSGDFIVGFPGETEADFADTMGLVEAVGYAQAYSFKYSTRPGTPAAEKP-QL 351

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
             +V ++RL  LQ  L+ QQ +  +A VG+ + VL EK G+  G++VGRS  L +V + +
Sbjct: 352 PGDVMSDRLARLQALLKAQQTAAQEAMVGREVGVLFEKPGRLPGQMVGRSDHLCAVHVEA 411

Query: 443 KNHNIGDIIKVRITDVKISTLYGEL 467
                G+I +VRIT    ++L G L
Sbjct: 412 PEALKGEIARVRITASAPNSLAGTL 436


>gi|238790782|ref|ZP_04634541.1| hypothetical protein yfred0001_12920 [Yersinia frederiksenii ATCC
           33641]
 gi|238721140|gb|EEQ12821.1| hypothetical protein yfred0001_12920 [Yersinia frederiksenii ATCC
           33641]
          Length = 474

 Score =  481 bits (1239), Expect = e-134,   Method: Composition-based stats.
 Identities = 198/449 (44%), Positives = 285/449 (63%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++  +K++GCQMN YDS +M D+  S  GY+     ++ADL++LNTC IREKA EKV+
Sbjct: 1   MIKKLHIKTWGCQMNEYDSSKMADLLASTHGYQLTEIPEEADLLLLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S LG  + LK        +L++ V GCVA  EGE + +R+P V+V+ GPQT +RLPE++ 
Sbjct: 61  SLLGHWKLLKEK----NPELIIGVGGCVASQEGEHLRQRAPCVDVIFGPQTLHRLPEMIN 116

Query: 142 RAR-FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
             +     +VD  +   +KF+RL        R  G TAF++I EGC+K+CTFCVVPYTRG
Sbjct: 117 HVQGTHSPIVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTFCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR    ++ E  +L   GV E+ LLGQNVNA+RG   DG+ C+F++LL  ++ I G+
Sbjct: 172 EEVSRPSDDILFEIAQLAAQGVREVNLLGQNVNAYRGATYDGDICSFAELLRLVAAIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+TTSHP + +D +I  + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II 
Sbjct: 232 DRVRFTTSHPIEFTDDIIDVYRDTPELVSFLHLPVQSGSDRILTMMKRAHTALEYKAIIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R  RPDI ISSDFI+GFPGET  DF  TM LV  + +  ++SF YS R GTP +++ +
Sbjct: 292 KLRQARPDIQISSDFIIGFPGETQQDFEQTMKLVADVHFDTSYSFIYSSRPGTPAADLPD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439
            V E+ K +RL  LQ+++ +Q +  +   VG +  +L+E   ++   +L GR+   + V 
Sbjct: 352 DVSEDEKKQRLHILQQRITQQAMEISRRMVGTVQRILVEGTSRKNVMELAGRTENNRVVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG  + V I DV  S+L G L+
Sbjct: 412 FEGTPEMIGKFVDVEIVDVYASSLRGILL 440


>gi|78048194|ref|YP_364369.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Xanthomonas
           campestris pv. vesicatoria str. 85-10]
 gi|123757453|sp|Q3BS94|MIAB_XANC5 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|78036624|emb|CAJ24315.1| 2-methylthioadenine synthetase [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
          Length = 484

 Score =  481 bits (1239), Expect = e-134,   Method: Composition-based stats.
 Identities = 200/462 (43%), Positives = 291/462 (62%), Gaps = 17/462 (3%)

Query: 14  VSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHI 72
           V++     +V  + ++K++GCQMN YDS +M D+  + +G E  ++ ++AD++++NTC I
Sbjct: 25  VARPSAPAVVRGKLYIKTHGCQMNEYDSAKMADVLAASEGLELTDNPEEADVVLVNTCSI 84

Query: 73  REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT 132
           REKA EKV+S LGR + LK      G  +++ V GCVA  EGE I++R+P V++V GPQT
Sbjct: 85  REKAQEKVFSQLGRWKALKAG----GKPVIIGVGGCVASQEGEAIVKRAPYVDLVFGPQT 140

Query: 133 YYRLPELL-ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCT 191
            +RLPEL+  R   GK  VD  +   +KF+RL        R  G +AF++I EGC K+C+
Sbjct: 141 LHRLPELIRARRESGKSQVDISFPEIEKFDRLP-----EPRAEGPSAFVSIMEGCSKYCS 195

Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK-----CT 246
           FCVVPYTRG E+SR    V+ E  +L   GV EI LLGQNVNA+RG              
Sbjct: 196 FCVVPYTRGEEVSRPFEDVLVEVAQLAAQGVREINLLGQNVNAYRGAYGADAGDAAQYAD 255

Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306
              L+ ++++I+G+ R+R+TTSHP + SD L+ A+ D+  L  YLHLPVQ+GSDRIL +M
Sbjct: 256 LGLLIRTIAQIEGIGRIRFTTSHPLEFSDSLVDAYRDVPQLANYLHLPVQAGSDRILSAM 315

Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
            R +TA E++  I ++R+VRPDI+ISSDFIVGFPGET+ DF  TM L++ +G+ Q+FSF 
Sbjct: 316 KRGYTALEFKSKIRKLRAVRPDISISSDFIVGFPGETEADFEKTMKLIEDVGFDQSFSFV 375

Query: 367 YSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEK 425
           YS R GTP S++ +   E VK  RL  LQ  +     S + + VG +  VL+E    ++ 
Sbjct: 376 YSRRPGTPASDLQDDTPEAVKQARLARLQAHINAHAASISQSMVGSVQRVLVEGPSRRDP 435

Query: 426 GKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
            +L G+S  ++ V        IG  + V IT+   ++L G +
Sbjct: 436 NELTGKSENMRPVNFPGNPRLIGQFVDVLITEAMSNSLRGRI 477


>gi|188576122|ref|YP_001913051.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Xanthomonas oryzae pv.
           oryzae PXO99A]
 gi|188520574|gb|ACD58519.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Xanthomonas oryzae pv.
           oryzae PXO99A]
          Length = 460

 Score =  481 bits (1239), Expect = e-134,   Method: Composition-based stats.
 Identities = 199/462 (43%), Positives = 292/462 (63%), Gaps = 17/462 (3%)

Query: 14  VSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHI 72
           +++     +V  + ++K++GCQMN YDS +M D+  + +G E  ++ ++AD++++NTC I
Sbjct: 1   MARPSAPAVVRGKLYIKTHGCQMNEYDSAKMADVLAASEGLELTDNPEEADVVLVNTCSI 60

Query: 73  REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT 132
           REKA EKV+S LGR + LK      G  +++ V GCVA  EGE I++R+P V++V GPQT
Sbjct: 61  REKAQEKVFSQLGRWKALKAG----GKPVIIGVGGCVASQEGEAIVKRAPYVDLVFGPQT 116

Query: 133 YYRLPELL-ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCT 191
            +RLPEL+  R   GK  VD  +   +KF+RL        R  G +AF++I EGC K+C+
Sbjct: 117 LHRLPELIRARRESGKSQVDISFPEIEKFDRLP-----EPRAEGPSAFVSIMEGCSKYCS 171

Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-----GLDGEKCT 246
           FCVVPYTRG E+SR    V+ E  +L   GV EI LLGQNVNA+RG      G   +   
Sbjct: 172 FCVVPYTRGEEVSRPFEDVLVEVAQLAAQGVREINLLGQNVNAYRGAYGADAGDPAQYAD 231

Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306
              L+ ++++I+G+ R+R+TTSHP + SD L+ A+ D+  L   LHLPVQ+GSDRIL +M
Sbjct: 232 LGLLIRTIAQIEGIGRIRFTTSHPLEFSDSLVDAYRDVPQLANCLHLPVQAGSDRILSAM 291

Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
            R +TA E++  I ++R+VRPDI+ISSDFIVGFPGET+ DF  TM L++ +G+ Q+FSF 
Sbjct: 292 KRGYTALEFKSRIRKLRAVRPDISISSDFIVGFPGETEADFEKTMKLIEDVGFDQSFSFV 351

Query: 367 YSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEK 425
           YS R GTP S++ +   E VK  RL  LQ  +     S + + VG +  VL+E    ++ 
Sbjct: 352 YSRRPGTPASDLQDDTPETVKQARLARLQAHISAHAASISQSMVGSVQRVLVEGPSRRDP 411

Query: 426 GKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
            +L G+S  ++ V        IG  + V IT+   ++L G +
Sbjct: 412 NELTGKSENMRPVNFPGNPRLIGQFVDVLITEAMSNSLRGRI 453


>gi|85058789|ref|YP_454491.1| putative tRNA-thiotransferase [Sodalis glossinidius str.
           'morsitans']
 gi|123519811|sp|Q2NUT9|MIAB_SODGM RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|84779309|dbj|BAE74086.1| putative tRNA-thiotransferase [Sodalis glossinidius str.
           'morsitans']
          Length = 474

 Score =  481 bits (1239), Expect = e-133,   Method: Composition-based stats.
 Identities = 197/449 (43%), Positives = 285/449 (63%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++  +K++GCQMN YDS +M D+  S  GY+  ++ ++AD+++LNTC IREKA EKV+
Sbjct: 1   MTKKLHIKTWGCQMNEYDSSKMADLLDSTHGYQLTDNPEEADVLLLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR   LK +R     +L++ V GCVA  EG  I  R+  V+++ GPQT +RLPE++ 
Sbjct: 61  HQLGRWHMLKEAR----PELIIGVGGCVASQEGAHIRERANYVDIIFGPQTLHRLPEMIN 116

Query: 142 RARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
                +  VVD  +   +KF+RL        R  G TAF++I EGC+K+C+FCVVPYTRG
Sbjct: 117 HVNGTRSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCSFCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR    ++ E  +L D GV E+ LLGQNVNA+RG   DG  CTF++LL  ++ I G+
Sbjct: 172 EEVSRPCDDILFEIAQLADQGVREVNLLGQNVNAYRGASYDGGICTFAELLRLVAAIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+RY TSHP + +D +I  + D   L+ ++HLPVQSGSDRIL  M R HTA EY+ II 
Sbjct: 232 DRIRYITSHPIEFTDDIIDVYRDTPELVSFVHLPVQSGSDRILTMMKRAHTALEYKSIIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           R+R  RPDI ISSDFI+GFPGET  DF  TM L+  + +  +FSF YS R GTP ++M++
Sbjct: 292 RLRKARPDIQISSDFIIGFPGETQQDFEQTMQLIADVNFDMSFSFIYSARPGTPAADMVD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439
            V E  K +RL  LQ+++ +Q + ++    G++  +L+E   ++   +L GR+   + V 
Sbjct: 352 NVSEEEKKQRLHILQERITQQAMQYSRRMKGKVQRILVEGTSRKNVMELSGRTENNRVVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG  + V I DV  ++L G L+
Sbjct: 412 FEGAPSMIGKFVDVEIVDVYPNSLRGVLL 440


>gi|114561896|ref|YP_749409.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Shewanella frigidimarina
           NCIMB 400]
 gi|122300718|sp|Q087J4|MIAB_SHEFN RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|114333189|gb|ABI70571.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Shewanella frigidimarina
           NCIMB 400]
          Length = 474

 Score =  481 bits (1238), Expect = e-133,   Method: Composition-based stats.
 Identities = 198/449 (44%), Positives = 289/449 (64%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++  +K++GCQMN YDS +M D+    QGY       +AD+++LNTC IREKA EKV+
Sbjct: 1   MSKKLHIKTWGCQMNEYDSSKMADLLDDYQGYTLTEDASEADVLLLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR ++LK+       +L++ V GCVA  EG+ I  R+  V+++ GPQT +RLPE++E
Sbjct: 61  HQLGRWKSLKDK----NPNLIIGVGGCVASQEGKAIKDRAQCVDIIFGPQTLHRLPEMIE 116

Query: 142 RARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           + + G++ V+D  +   +KF+RL        R  G TAF++I EGC K+C+FCVVPYTRG
Sbjct: 117 QIQRGEKAVIDISFPEIEKFDRLP-----EPRADGPTAFVSIMEGCSKYCSFCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR L  V+ E  +L   GV E+ LLGQNVNA+RG   D E CTF++LL  ++ I G+
Sbjct: 172 EEVSRPLDDVILEVAQLAAQGVREVNLLGQNVNAYRGATHDDEICTFAELLRLVASIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            RLR+TTSHP + +  +I  + D   L+ +LHLPVQSGSDRIL  M R H A EY+ II 
Sbjct: 232 DRLRFTTSHPIEFTQDIIDVYEDTPELVSFLHLPVQSGSDRILTQMKRGHMAIEYKSIIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           R+R  RPDI ISSDFI+GFPGE+ DDF  TM L++ + +  +FSF YS R GTP +++ +
Sbjct: 292 RLRKARPDIQISSDFIIGFPGESKDDFADTMKLIEDVAFDHSFSFIYSARPGTPAADLPD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVV 439
            V +  K +RL  LQ ++ +Q + ++   +G +  +L+E    K   +L GR+   + V 
Sbjct: 352 DVSDEEKKQRLAILQDRITQQAMRYSRQMLGTVQRILVEGPSVKNPMELRGRTENSRVVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
             + + +IG  + V+I DV  ++L GE V
Sbjct: 412 FEAAHTHIGSFVDVKIVDVYTNSLRGEFV 440


>gi|254496551|ref|ZP_05109420.1| hypothetical protein LDG_0201 [Legionella drancourtii LLAP12]
 gi|254354230|gb|EET12896.1| hypothetical protein LDG_0201 [Legionella drancourtii LLAP12]
          Length = 447

 Score =  481 bits (1238), Expect = e-133,   Method: Composition-based stats.
 Identities = 201/449 (44%), Positives = 290/449 (64%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMED-MFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++ ++K+ GCQMN YDS +M + +  S G  + + +++AD+I+LNTC IREKA EKV+
Sbjct: 1   MAKKLYIKTNGCQMNEYDSSKMAEVLLESHGLVKTDQVEEADVILLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL- 140
           S LG+ R  K         +++ V GCVA  EG +I++R+P V++V GPQT +RLP +L 
Sbjct: 61  SQLGQWREYKAK----NPHVVIGVGGCVASQEGADIVKRAPFVDLVFGPQTLHRLPAMLN 116

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           ER    K VVD  +   +KF+ L        R  G TAF++I EGC K+C+FCVVPYTRG
Sbjct: 117 ERIEKKKAVVDISFPEIEKFDHLP-----APRAEGPTAFVSIMEGCSKYCSFCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            EISR    V+ E   L   GV EI LLGQNVN +RGK  +G+    + L++ ++ ++G+
Sbjct: 172 EEISRPFDDVLAECYHLATQGVREINLLGQNVNDYRGKMENGDIADLALLIHYIAALEGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+TTSHP   SD LI A+ ++  L  +LHLPVQSGSDRIL  M R +TA E++  I 
Sbjct: 232 GRIRFTTSHPLAFSDNLINAYAEVPELANHLHLPVQSGSDRILGLMKRGYTALEFKSKIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R VRPDI +S+D IVGFPGETD DF+ATMDLV +IG+  +FSF YSPR GTP +N+++
Sbjct: 292 KLRKVRPDIRLSTDIIVGFPGETDKDFQATMDLVHEIGFDTSFSFIYSPRPGTPAANLVD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLVGRSPWLQSVV 439
           +    VK +RL  LQ +L  Q   ++ + +G    +L+  H K+   +L GR+   + V 
Sbjct: 352 ETPLEVKKQRLQILQSRLLLQASRYSQSMIGSTQRILVTGHSKKDSQQLSGRTECNRVVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
            ++  H IG  ++V+I D   ++L G LV
Sbjct: 412 FDAPPHLIGQFVEVQINDALPNSLRGRLV 440


>gi|329296076|ref|ZP_08253412.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Plautia stali symbiont]
          Length = 474

 Score =  481 bits (1238), Expect = e-133,   Method: Composition-based stats.
 Identities = 195/449 (43%), Positives = 287/449 (63%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++  +K++GCQMN YDS +M D+  S  GY      +DAD+++LNTC IREKA EKV+
Sbjct: 1   MTKKLHIKTWGCQMNEYDSSKMADLLNSTHGYTLTEEAEDADVLLLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR + LK        +L++ V GCVA  EG++I +R+  V++V GPQT +RLPE++ 
Sbjct: 61  HLLGRWKKLKAK----NPELIIGVGGCVASQEGDKIRQRAQCVDIVFGPQTLHRLPEMIN 116

Query: 142 RARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           + R  K  +VD  +   +KF+RL        R  G TAF++I EGC+K+CTFCVVPYTRG
Sbjct: 117 QVRGSKSTIVDVSFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTFCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR    ++ E  +L   GV E+ LLGQNVNA+RG   D + CTF++LL  ++ I G+
Sbjct: 172 EEVSRPCDDILLEVAQLAAQGVREVNLLGQNVNAYRGATFDDQICTFAELLRLVAAIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+TTSHP + +D +I  + D+  L+ +LHLPVQSG+DRIL  M R HTA EY+ II 
Sbjct: 232 DRIRFTTSHPIEFTDDIIDVYRDMPELVSFLHLPVQSGADRILTLMKRAHTALEYKAIIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++ + RPDI ISSDFI+GFPGET  DF  TM L+ ++ +  +FSF YS R GTP +++ +
Sbjct: 292 KLVAARPDIQISSDFIIGFPGETQQDFEQTMKLIGEVNFDTSFSFIYSARPGTPAADLPD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439
            V E  K +RL  LQ ++ +Q ++++   +G +  +L+E   ++   +L GR+   + V 
Sbjct: 352 DVPEEEKKQRLYILQDRINQQAMAWSRGMLGTVQRILVEGTSRKNVMELTGRTENNRVVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG  + V I DV  ++L G +V
Sbjct: 412 FEGDVRMIGKFVDVEIVDVYTNSLRGVVV 440


>gi|229891229|sp|Q3SFF1|MIAB_THIDA RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
          Length = 446

 Score =  481 bits (1238), Expect = e-133,   Method: Composition-based stats.
 Identities = 199/448 (44%), Positives = 283/448 (63%), Gaps = 12/448 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ ++K++GCQMN YDS +M D+   ++G    ++ +DAD+I+ NTC +REKA EKV+  
Sbjct: 2   KKIYIKTFGCQMNEYDSDKMADVLNAAEGLTPTSTPEDADVILFNTCSVREKAQEKVFHD 61

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-ER 142
           LGR+R+LK +      +L++ V GCVA  EG  I+ R+P V+VV GPQT +RLPEL+ +R
Sbjct: 62  LGRVRHLKQA----NPNLIIGVGGCVASQEGAAIVARAPFVDVVFGPQTLHRLPELIAQR 117

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
              G+  VD  +   +KF+ L        R  G  AF++I EGC K+CTFCVVPYTRG E
Sbjct: 118 RETGRAQVDISFPEIEKFDHLPPA-----RVEGGAAFVSIMEGCSKYCTFCVVPYTRGEE 172

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR    V+ E   L   GV EITLLGQNVNA++G   +G    F+ LL  + EI G+ R
Sbjct: 173 VSRPFDDVIAEVANLAARGVKEITLLGQNVNAYQGALDEGGTADFAFLLEMVHEIPGVER 232

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +RYTTSHPR+M+  LI+ +G L  L+ +LHLPVQSGSDRIL +M R HT  E++ I+ ++
Sbjct: 233 IRYTTSHPREMTQRLIECYGKLPKLVSHLHLPVQSGSDRILAAMKRGHTVLEFKSIVRKL 292

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R  R D+ +SSDFIVGFPGET  DF ATM LV+++ +  +FSF YS R GTP ++  + V
Sbjct: 293 REQRSDLCLSSDFIVGFPGETGADFEATMKLVEELNFDASFSFIYSKRPGTPAADYADDV 352

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441
              +K +RL+ LQ ++  Q    N + VG +  VL+E   ++   +L GR+   + V   
Sbjct: 353 SAELKTQRLMRLQARIEAQAQGVNRSMVGSVQRVLVEGQARKNANELAGRTGNNRIVNFA 412

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELVV 469
             +  +G  + V IT     +L GE V 
Sbjct: 413 GPSRLLGQFVDVTITQALPHSLRGEAVT 440


>gi|152996920|ref|YP_001341755.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Marinomonas sp. MWYL1]
 gi|229890562|sp|A6VZE1|MIAB_MARMS RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|150837844|gb|ABR71820.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Marinomonas sp. MWYL1]
          Length = 451

 Score =  481 bits (1238), Expect = e-133,   Method: Composition-based stats.
 Identities = 193/449 (42%), Positives = 288/449 (64%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++ F++++GCQMN YDS RM D+   S   E  ++ ++AD+++LNTC IREKA +KVY
Sbjct: 1   MAKKLFIQTHGCQMNEYDSSRMADLLGESHEMELTDNAEEADVLLLNTCSIREKAQDKVY 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR + LK        +L++ V GCVA  EG+ I +R+  V+++ GPQT ++LPE++ 
Sbjct: 61  HQLGRWKKLKQK----NPNLVIGVGGCVASQEGDAIRKRAKHVDMIFGPQTLHKLPEMVN 116

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
            A     + D  +   +KF+ L        R  G  AF++I EGC K+CTFCVVPYTRG 
Sbjct: 117 AAGKHIPITDVTFPEIEKFDHLP-----APRVEGAEAFVSIMEGCSKYCTFCVVPYTRGE 171

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E+SR    ++ E  +L + GV EI LLGQNVNA+RG   +G++   +D+++++++I G+ 
Sbjct: 172 EVSRPFDSILKEVVQLAEQGVREIHLLGQNVNAYRGDTAEGDEADLADIIHAVAQIDGVE 231

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHP + SD LI+A  +   L+ +LHLPVQSG+D IL +M R H    Y   I+R
Sbjct: 232 RIRFTTSHPVEFSDSLIEAFRNEPKLVSHLHLPVQSGADNILSAMKRGHDRQYYIDKINR 291

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I+  RP I++SSDFI+GFPGETDDDF  TM+L+ +IG+  +FSF YS R GTP SN+ + 
Sbjct: 292 IKEARPGISLSSDFIIGFPGETDDDFVDTMNLIQEIGFDHSFSFVYSQRPGTPASNLEDD 351

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVL 440
             E+VK ERL  LQ+++ +Q    + + VG++  +LI  +  ++ G+L GR+   + V  
Sbjct: 352 TPEDVKKERLAILQRRISQQAYDISLSMVGEVQRILISGYSPRDPGQLQGRTENNRIVNF 411

Query: 441 NS-KNHNIGDIIKVRITDVKISTLYGELV 468
            +     IG    V ITD   ++L GELV
Sbjct: 412 RAFDPQLIGKFADVVITDAYPNSLLGELV 440


>gi|298293911|ref|YP_003695850.1| RNA modification enzyme, MiaB family [Starkeya novella DSM 506]
 gi|296930422|gb|ADH91231.1| RNA modification enzyme, MiaB family [Starkeya novella DSM 506]
          Length = 476

 Score =  480 bits (1237), Expect = e-133,   Method: Composition-based stats.
 Identities = 242/452 (53%), Positives = 330/452 (73%), Gaps = 10/452 (2%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P++ +V+S+GCQMNVYD+ RM D    +G+   +S DDADL++LNTCHIREKAAEKVYS 
Sbjct: 4   PRKLYVRSFGCQMNVYDAQRMTDTLAKEGFVETDSPDDADLVILNTCHIREKAAEKVYSE 63

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR+R    ++ + G   +V VAGCVAQAEG EI++R+  V++VVGPQ+Y++LPEL+  A
Sbjct: 64  LGRLRK---AQEEAGRSQMVAVAGCVAQAEGAEIIKRARAVDLVVGPQSYHKLPELVAEA 120

Query: 144 R-----FGKRV--VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
           +      GKR   V+T++ VEDKF+ L         KRG  AF+T+QEGCDKFCTFCVVP
Sbjct: 121 QARRDGNGKRAKLVETEFPVEDKFDFLPPPTSAAITKRGPAAFVTVQEGCDKFCTFCVVP 180

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256
           YTRG E+SR LS+++DE  +L D+GV EITL+GQNVNA+ G    G     ++L+  ++E
Sbjct: 181 YTRGAEVSRPLSKILDEVVRLADSGVREITLIGQNVNAYHGLDAGGRSANLAELVRRVAE 240

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           + G+ R+RYTTSHPRDM + LI AHG++  LMPYLHLPVQSGS+RIL +MNR+H    + 
Sbjct: 241 VPGIARVRYTTSHPRDMDEELIAAHGEMPALMPYLHLPVQSGSNRILAAMNRKHDRELFF 300

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
            I++++R+ RPDIA SSDFIVGFPGETD+DF  TMDLV+K+G+A AFSFKYSPR GTP +
Sbjct: 301 DIVEKVRAARPDIAFSSDFIVGFPGETDEDFADTMDLVEKVGFASAFSFKYSPRPGTPAA 360

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQ 436
            M  Q+ E VK+ R+  LQ  L  Q+ +F++ C G+  E+L+EK G+  G+L+GRSP+LQ
Sbjct: 361 GMEAQLPEAVKSARIHALQALLDGQKAAFDEGCRGRRFEILLEKPGRFPGQLIGRSPYLQ 420

Query: 437 SVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           SVV+ +    IG +  V + +V   +L G+++
Sbjct: 421 SVVVEAPVEAIGTLAMVEVREVSTKSLSGDII 452


>gi|117919457|ref|YP_868649.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Shewanella sp.
           ANA-3]
 gi|229890655|sp|A0KTX4|MIAB_SHESA RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|117611789|gb|ABK47243.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Shewanella sp. ANA-3]
          Length = 474

 Score =  480 bits (1237), Expect = e-133,   Method: Composition-based stats.
 Identities = 194/449 (43%), Positives = 288/449 (64%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++  +K++GCQMN YDS +M D+    QGY      ++AD+++LNTC IREKA EKV+
Sbjct: 1   MSKKLHIKTWGCQMNEYDSSKMADLLGEYQGYTLTEEAEEADILLLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR + LK+       DL++ V GCVA  EG+ I  R+  V+++ GPQT +RLP++++
Sbjct: 61  HQLGRWKTLKDK----NPDLIIGVGGCVASQEGKAIKDRAQCVDIIFGPQTLHRLPDMID 116

Query: 142 RARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           + R G++ V+D  +   +KF+RL        R  G TAF++I EGC K+C+FCVVPYTRG
Sbjct: 117 QVRRGEKAVIDVSFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCSKYCSFCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR    ++ E  +L + GV E+ LLGQNVNA+RG   DG  CTF++LL  ++ I G+
Sbjct: 172 EEVSRPSDDIILEIAQLAEQGVREVNLLGQNVNAYRGATHDGGICTFAELLRYVAAIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+TTSHP + +  +I  + D   L+ +LHLPVQSGSDRIL +M R H A EY+ II 
Sbjct: 232 DRIRFTTSHPIEFTQDIIDVYEDTPELVSFLHLPVQSGSDRILTAMKRGHMAIEYKSIIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           R+R  RPDI ISSDFI+GFPGET +DF  TM L++ + +  +FSF YS R GTP +++ +
Sbjct: 292 RLRKARPDIQISSDFIIGFPGETKEDFADTMKLIEDVAFDHSFSFIYSARPGTPAADLPD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVV 439
            VD   K +RL  LQ ++ +Q + ++   +G +  +L+E    K   +L GR+   + V 
Sbjct: 352 DVDMEEKKQRLAILQDRITQQAMRYSRHMMGTVQRILVEGPSVKNPMELRGRTENNRVVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
              +  +IG  + V I DV  ++L G+ +
Sbjct: 412 FEGQPKHIGSFVDVEIVDVYTNSLRGKFI 440


>gi|84515221|ref|ZP_01002583.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Loktanella vestfoldensis
           SKA53]
 gi|84510504|gb|EAQ06959.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Loktanella vestfoldensis
           SKA53]
          Length = 436

 Score =  480 bits (1237), Expect = e-133,   Method: Composition-based stats.
 Identities = 238/446 (53%), Positives = 318/446 (71%), Gaps = 13/446 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
            P++ F+K+YGCQMNVYDS RM +    QGY + +  +DAD+I+LNTCHIREKAAEKVYS
Sbjct: 3   APKKLFIKTYGCQMNVYDSERMAEALGGQGYVQTDHAEDADMILLNTCHIREKAAEKVYS 62

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            LGR++ LK++      DL + VAGCVAQAEG EI+RR P+V++VVGPQ+Y+RLP +   
Sbjct: 63  ELGRMKVLKDA----KPDLKIGVAGCVAQAEGAEIMRRQPMVDLVVGPQSYHRLPAMDAA 118

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            + G + +DTD+  +DKF+ L         KRG TAFLT+QEGCDKFC FCVVPYTRG E
Sbjct: 119 VQGGAKALDTDFPEDDKFKTLKT---RSKAKRGPTAFLTVQEGCDKFCAFCVVPYTRGAE 175

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR   +++ EAR+L+D GV E+TLLGQNVNA+      G +   + L+++L+EI GL R
Sbjct: 176 VSRPADRILREARELVDAGVRELTLLGQNVNAYH-----GHERGLAGLIWALTEIDGLER 230

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP DM   LI AHG  + LMPYLHLPVQSGSDRILK+MNR+HTA  Y ++IDRI
Sbjct: 231 IRFTTSHPNDMDQALIDAHGTCEKLMPYLHLPVQSGSDRILKAMNRKHTAESYLRLIDRI 290

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+ RPDI +S DFIVGFPGETD DF  T+ LV  + Y QA+SFKYS R GTP +    Q+
Sbjct: 291 RAARPDILLSGDFIVGFPGETDQDFEDTLQLVRDVHYGQAYSFKYSTRPGTPAAEKP-QL 349

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
            ++V  ERL  LQ  LR+QQ     + +G+ ++VL EK G+E G+++G+S +L +V  ++
Sbjct: 350 PDDVMNERLQRLQALLRDQQQQTQASMIGREVKVLFEKAGREAGQMIGKSEYLHAVYADA 409

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
               +G + +VRI     ++L GEL+
Sbjct: 410 PATVLGQVRRVRIVQDSANSLKGELI 435


>gi|325920324|ref|ZP_08182261.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Xanthomonas gardneri ATCC
           19865]
 gi|325549186|gb|EGD20103.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Xanthomonas gardneri ATCC
           19865]
          Length = 489

 Score =  480 bits (1237), Expect = e-133,   Method: Composition-based stats.
 Identities = 204/463 (44%), Positives = 294/463 (63%), Gaps = 14/463 (3%)

Query: 14  VSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHI 72
           V++     +V  + ++K++GCQMN YDS +M D+  + +G E  ++ +DAD++++NTC I
Sbjct: 25  VARPAAPAVVRGKLYIKTHGCQMNEYDSAKMADVLAASEGLELTDNPEDADVVLVNTCSI 84

Query: 73  REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVV-VAGCVAQAEGEEILRRSPIVNVVVGPQ 131
           REKA EKV+S LGR R LK SR K GG  +++ V GCVA  EGE I++R+P V++V GPQ
Sbjct: 85  REKAQEKVFSQLGRWRLLKESRHKAGGTPVIIGVGGCVASQEGEAIVKRAPYVDLVFGPQ 144

Query: 132 TYYRLPELL-ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190
           T +RLPEL+  R   GK  VD  +   +KF+RL        R  G +AF++I EGC K+C
Sbjct: 145 TLHRLPELIRARRESGKSQVDISFPEIEKFDRLP-----EPRADGPSAFVSIMEGCSKYC 199

Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK-----C 245
           +FCVVPYTRG E+SR    V+ E  +L   GV EI LLGQNVNA+RG             
Sbjct: 200 SFCVVPYTRGEEVSRPFEDVLVEVAQLAAQGVREINLLGQNVNAYRGAYGADAGDAAQYA 259

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
               L+ ++++I G+ R+R+TTSHP + SD L+ A+ D+  L  YLHLPVQ+GSDRIL +
Sbjct: 260 DLGLLIRTIAQIDGVGRIRFTTSHPLEFSDSLVDAYRDVPQLANYLHLPVQAGSDRILSA 319

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           M R +TA E++  I ++R+VRPDI+ISSDFIVGFPGET+ DF  TM L++ +G+ Q+FSF
Sbjct: 320 MKRGYTALEFKSKIRKLRAVRPDISISSDFIVGFPGETEADFEKTMKLIEDVGFDQSFSF 379

Query: 366 KYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KE 424
            YS R GTP S++ +   + VK  RL  LQ ++       + + VG +  VL+E    ++
Sbjct: 380 IYSRRPGTPASDLQDDTPDAVKQARLARLQAQINAHATRISQSMVGSVQRVLVEGPSRRD 439

Query: 425 KGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
             +L G+S  ++ V        IG  + V IT+   ++L G +
Sbjct: 440 PNELTGKSENMRPVNFPGNARLIGQFVDVVITEAMSNSLRGRI 482


>gi|194365135|ref|YP_002027745.1| (dimethylallyl)adenosine tRNA methylthiotransferase
           [Stenotrophomonas maltophilia R551-3]
 gi|229891008|sp|B4SQK7|MIAB_STRM5 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|194347939|gb|ACF51062.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Stenotrophomonas
           maltophilia R551-3]
          Length = 472

 Score =  480 bits (1237), Expect = e-133,   Method: Composition-based stats.
 Identities = 204/447 (45%), Positives = 289/447 (64%), Gaps = 12/447 (2%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + ++K++GCQMN YDS +M D+  +  G E  +S DDAD+I++NTC IREKA EKV+S L
Sbjct: 34  KLYIKTHGCQMNEYDSAKMADVLAASDGLELTDSPDDADVILVNTCSIREKAQEKVFSQL 93

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           G  ++LKN     G ++++ V GCVA  EGE I++R+P V++V GPQT +RLPEL+   R
Sbjct: 94  GVWKSLKNK----GREVIIGVGGCVASQEGEAIIKRAPFVDLVFGPQTLHRLPELIRARR 149

Query: 145 FGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             KR  VD  +   +KF+RL        R  G +AF++I EGC K+C+FCVVPYTRG E+
Sbjct: 150 EQKRPQVDISFPEIEKFDRLP-----EPRADGASAFVSIMEGCSKYCSFCVVPYTRGTEV 204

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR    VV E  +L   GV EI LLGQNVNA+RG   DGE      L+ +++EI G+ R+
Sbjct: 205 SRPFEDVVVEVAQLAAQGVREINLLGQNVNAYRGPYGDGEFADLGLLIRTIAEIDGVGRI 264

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+TTSHP + SD LI A  D+  L  +LHLPVQ+GSDR+L +M R +TA E++  I ++R
Sbjct: 265 RFTTSHPLEFSDSLIDAFRDVPQLANFLHLPVQAGSDRVLSAMKRGYTALEFKSKIRKLR 324

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           +VRPDI+ISSDFIVGFPGETD DF  TM L++ IG+  +FSF YS R GTP +++ + + 
Sbjct: 325 AVRPDISISSDFIVGFPGETDADFEKTMKLIEDIGFDHSFSFIYSRRPGTPAADLEDTIS 384

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLNS 442
           +  K  RL  LQ+++       ++  VG +  VL+E    K   +L G++  ++SV   +
Sbjct: 385 DAEKHARLSRLQERINAHAAGISEKMVGTVQTVLVEGPSRKNPNELTGKTENMRSVNFPA 444

Query: 443 KNHNIGDIIKVRITDVKISTLYGELVV 469
               IG  + V IT+   ++L   +V 
Sbjct: 445 PARLIGQFVDVVITEALTNSLRARVVA 471


>gi|74318724|ref|YP_316464.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Thiobacillus
           denitrificans ATCC 25259]
 gi|74058219|gb|AAZ98659.1| tRNA-i(6)A37 modification enzyme MiaB [Thiobacillus denitrificans
           ATCC 25259]
          Length = 461

 Score =  480 bits (1237), Expect = e-133,   Method: Composition-based stats.
 Identities = 199/448 (44%), Positives = 283/448 (63%), Gaps = 12/448 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ ++K++GCQMN YDS +M D+   ++G    ++ +DAD+I+ NTC +REKA EKV+  
Sbjct: 17  KKIYIKTFGCQMNEYDSDKMADVLNAAEGLTPTSTPEDADVILFNTCSVREKAQEKVFHD 76

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-ER 142
           LGR+R+LK +      +L++ V GCVA  EG  I+ R+P V+VV GPQT +RLPEL+ +R
Sbjct: 77  LGRVRHLKQA----NPNLIIGVGGCVASQEGAAIVARAPFVDVVFGPQTLHRLPELIAQR 132

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
              G+  VD  +   +KF+ L        R  G  AF++I EGC K+CTFCVVPYTRG E
Sbjct: 133 RETGRAQVDISFPEIEKFDHLPPA-----RVEGGAAFVSIMEGCSKYCTFCVVPYTRGEE 187

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR    V+ E   L   GV EITLLGQNVNA++G   +G    F+ LL  + EI G+ R
Sbjct: 188 VSRPFDDVIAEVANLAARGVKEITLLGQNVNAYQGALDEGGTADFAFLLEMVHEIPGVER 247

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +RYTTSHPR+M+  LI+ +G L  L+ +LHLPVQSGSDRIL +M R HT  E++ I+ ++
Sbjct: 248 IRYTTSHPREMTQRLIECYGKLPKLVSHLHLPVQSGSDRILAAMKRGHTVLEFKSIVRKL 307

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R  R D+ +SSDFIVGFPGET  DF ATM LV+++ +  +FSF YS R GTP ++  + V
Sbjct: 308 REQRSDLCLSSDFIVGFPGETGADFEATMKLVEELNFDASFSFIYSKRPGTPAADYADDV 367

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441
              +K +RL+ LQ ++  Q    N + VG +  VL+E   ++   +L GR+   + V   
Sbjct: 368 SAELKTQRLMRLQARIEAQAQGVNRSMVGSVQRVLVEGQARKNANELAGRTGNNRIVNFA 427

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELVV 469
             +  +G  + V IT     +L GE V 
Sbjct: 428 GPSRLLGQFVDVTITQALPHSLRGEAVT 455


>gi|144899561|emb|CAM76425.1| tRNA-i(6)A37 modification enzyme MiaB [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 448

 Score =  480 bits (1237), Expect = e-133,   Method: Composition-based stats.
 Identities = 238/453 (52%), Positives = 324/453 (71%), Gaps = 19/453 (4%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + ++ FVK+YGCQMNVYDS RM D+    GY   +S +DAD+++LNTCHIREKA+EKV+S
Sbjct: 1   MTKKLFVKTYGCQMNVYDSARMADVLAPLGYGPGDSPEDADMVILNTCHIREKASEKVFS 60

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            LGR+R +K     + G L++ VAGCVAQAEGEEILRR+P V++V+GPQTY+RLPE++ +
Sbjct: 61  ELGRLRQIKTE---KDGGLIIAVAGCVAQAEGEEILRRAPFVDIVLGPQTYHRLPEMVAQ 117

Query: 143 AR-------FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
           A         G  V+DT++ +E KF+ L        R  G  AFL++QEGCDKFCTFCVV
Sbjct: 118 ASRAALANGNGGAVLDTEFPIEPKFDHLP-----EPRADGPAAFLSVQEGCDKFCTFCVV 172

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
           PYTRG E SR    ++DEA+KL+D GV EITLLGQNVNAW G        +F  L+  L+
Sbjct: 173 PYTRGGEYSRPSQAILDEAKKLVDQGVVEITLLGQNVNAWHGDD----GKSFGWLIRQLA 228

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
           ++ GL R+R+TTSHPRDM D LI AHG++  LMP+LHLPVQ+GS+R+L++MNRRH    Y
Sbjct: 229 KLDGLARIRFTTSHPRDMDDDLIDAHGEVKKLMPFLHLPVQAGSNRMLEAMNRRHDRDFY 288

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
             ++D++R+ RPD+A+SSDFIVGFPGETD DF  T+DLV ++G+   +SFKYS R GTP 
Sbjct: 289 FGLVDKLRAARPDLALSSDFIVGFPGETDADFADTLDLVRRVGFVNTYSFKYSARPGTPA 348

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWL 435
           + M  QVDE VK  RL  L   L+EQ   FN  C+G  + V++++ GK  G+L+GRSP++
Sbjct: 349 AIMPNQVDEAVKEARLAQLMDLLQEQTNHFNQNCLGMEMAVVLDRQGKYPGQLIGRSPYM 408

Query: 436 QSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           Q V +++  H  G ++ VRI+++   +L GE++
Sbjct: 409 QPVHVDNVAHLAGHLVTVRISEIHPRSLKGEII 441


>gi|259909112|ref|YP_002649468.1| Putative tRNA-thiotransferase [Erwinia pyrifoliae Ep1/96]
 gi|224964734|emb|CAX56251.1| Putative tRNA-thiotransferase [Erwinia pyrifoliae Ep1/96]
          Length = 480

 Score =  480 bits (1237), Expect = e-133,   Method: Composition-based stats.
 Identities = 197/455 (43%), Positives = 289/455 (63%), Gaps = 12/455 (2%)

Query: 17  IVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREK 75
           + +   + ++  +K++GCQMN YDS +M D+  S  GY      +DAD+++LNTC IREK
Sbjct: 1   MTNGKPMTKKLHIKTWGCQMNEYDSSKMADLLNSTHGYTLTEQAEDADVLLLNTCSIREK 60

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135
           A EKV+  LGR + LK +      D+++ V GCVA  EG +I +R+  V++V GPQT +R
Sbjct: 61  AQEKVFGLLGRWKKLKEA----NPDVIIGVGGCVASQEGAQIRQRASCVDIVFGPQTLHR 116

Query: 136 LPELLERARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCV 194
           LPE++   R  K  VVD  +   +KF+R+        R  G TAF++I EGC+K+CTFCV
Sbjct: 117 LPEMINSVRGTKSPVVDVSFPEIEKFDRMP-----EPRANGPTAFVSIMEGCNKYCTFCV 171

Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL 254
           VPYTRG E+SR    V+ E  +L   GV E+ LLGQNVNA+RG   DG  C+F++LL  +
Sbjct: 172 VPYTRGEEVSRPADDVLFEVAQLAAQGVREVNLLGQNVNAYRGATYDGGICSFAELLRLV 231

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
           + I G+ R+R+TTSHP + +D +I+ + D   L+ +LHLPVQSG+DRIL  M R HTA E
Sbjct: 232 ATIDGIDRIRFTTSHPIEFTDDIIEVYRDTPELVSFLHLPVQSGADRILTLMKRAHTALE 291

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
           Y+ II ++ + RPDI ISSDFI+GFPGE   DF  TM LV +I +  ++SF YS R GTP
Sbjct: 292 YKAIIRKLLAARPDIQISSDFIIGFPGENQADFEQTMKLVGEINFDTSYSFIYSARPGTP 351

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSP 433
            +++ + V E  K +RL  LQ ++ +Q ++++   +G +  +L+E   ++   +L GR+ 
Sbjct: 352 AADLPDDVSEEEKKQRLYILQDRISQQAMAWSRRKLGTVQRILVEGTSRKSVMELAGRTE 411

Query: 434 WLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
             + V       +IG  + V ITDV  ++L G L+
Sbjct: 412 CNRVVNFEGAPEHIGKFVDVEITDVYANSLRGVLL 446


>gi|254516558|ref|ZP_05128617.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [gamma proteobacterium
           NOR5-3]
 gi|219674981|gb|EED31348.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [gamma proteobacterium
           NOR5-3]
          Length = 446

 Score =  480 bits (1237), Expect = e-133,   Method: Composition-based stats.
 Identities = 208/450 (46%), Positives = 296/450 (65%), Gaps = 13/450 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++ FVK++GCQMN YDS R++D+   S G E  +  +DAD+I+LNTC IREKA EKV+
Sbjct: 1   MSKKVFVKTHGCQMNEYDSARIQDLLVDSHGLEPTDREEDADVILLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR R LK        +L++ V GCVA  EG EI +R+P V++V GPQT +RLPE+LE
Sbjct: 61  HQLGRWRPLKQK----NPNLIIGVGGCVASQEGAEIGKRAPFVDLVFGPQTLHRLPEMLE 116

Query: 142 RAR-FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
             R  G  VVD  +   +KF+RL           G TAF++I EGC K+C+FCVVPYTRG
Sbjct: 117 ERRDTGNLVVDISFPEIEKFDRLP-----EPSVEGPTAFVSIMEGCSKYCSFCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR L  V+ E   L   GV E+ LLGQNVNA+RG   +G+   F++LL+ ++ I G+
Sbjct: 172 EEVSRPLDDVIAEVAGLAARGVREVNLLGQNVNAYRGDNHEGDVVDFAELLHFVAAIPGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+RYTTSHP + S+ LI+A+ ++  L+ +LHLPVQ+GSDRIL +M R HT  EY+  I 
Sbjct: 232 DRIRYTTSHPVEFSEALIQAYAEIPELVDHLHLPVQAGSDRILAAMKRGHTVLEYKSKIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R++RP+I++SSDFI+GFPGET+ DF ATM L+D IG+  +FSF YS R GTP +++ +
Sbjct: 292 KLRTIRPNISMSSDFIIGFPGETEADFAATMKLIDDIGFDASFSFIYSARPGTPAADLKD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVV 439
             DE+ K  RL  LQ ++ +Q  + +   VG    +LI     K+ G+L GR+   + V 
Sbjct: 352 DTDEDTKKSRLHILQARINQQAQAISRNMVGTRQRILITGPSRKDPGQLQGRTENNRVVN 411

Query: 440 LNSKNH-NIGDIIKVRITDVKISTLYGELV 468
            ++ +H  IG  + V I +   ++L GEL+
Sbjct: 412 FSATDHGLIGQFVDVTIGEALPNSLRGELI 441


>gi|127513851|ref|YP_001095048.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Shewanella loihica PV-4]
 gi|229890652|sp|A3QH41|MIAB_SHELP RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|126639146|gb|ABO24789.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Shewanella loihica PV-4]
          Length = 474

 Score =  480 bits (1236), Expect = e-133,   Method: Composition-based stats.
 Identities = 194/449 (43%), Positives = 285/449 (63%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++  +K++GCQMN YDS +M D+    QGY      ++AD+++LNTC IREKA EKV+
Sbjct: 1   MSKKLHIKTWGCQMNEYDSSKMADLLDEYQGYTLTEEAEEADVLLLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR + LK+       +L++ V GCVA  EG+ I  R+  V+++ GPQT +RLPE++E
Sbjct: 61  HQLGRWKTLKDK----NPNLIIGVGGCVASQEGKAIKDRAQCVDLIFGPQTLHRLPEMIE 116

Query: 142 RARFG-KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           + + G K V+D  +   +KF+RL        R  G +AF++I EGC K+C+FCVVPYTRG
Sbjct: 117 QIQQGGKAVIDVSFPEIEKFDRLP-----EPRAEGPSAFVSIMEGCSKYCSFCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR +  V+ E  +L + GV E+ LLGQNVNA+RG   D + CTF++LL  ++ I G+
Sbjct: 172 EEVSRPVDDVILEIAQLAEQGVREVNLLGQNVNAYRGATHDDDICTFAELLRYVAAIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+TTSHP + +  +I  + D   L+ +LHLPVQSGSD IL  M R H A EY+ II 
Sbjct: 232 DRIRFTTSHPIEFTQDIIDVYEDTPELVSFLHLPVQSGSDLILTQMKRGHMAIEYKSIIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           R+R  RPDI ISSDFIVGFPGE+  DF  TM L++ + +  +FSF YS R GTP S++ +
Sbjct: 292 RLRKARPDIQISSDFIVGFPGESKQDFADTMKLIEDVQFDHSFSFIYSARPGTPASDLPD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVV 439
            V  + K ERL  LQ ++ +Q + ++   +G +  +L+E    K   +L GR+   + V 
Sbjct: 352 DVSLDEKKERLAILQDRITQQAMRYSRQMLGTVQRILVEGPSVKNPMELRGRTENNRVVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
             +   +IG  + V I DV  ++L G+ +
Sbjct: 412 FEADPKHIGSFVDVEIVDVFTNSLRGKFI 440


>gi|325925030|ref|ZP_08186452.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Xanthomonas perforans
           91-118]
 gi|325544542|gb|EGD15903.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Xanthomonas perforans
           91-118]
          Length = 470

 Score =  480 bits (1236), Expect = e-133,   Method: Composition-based stats.
 Identities = 200/462 (43%), Positives = 290/462 (62%), Gaps = 17/462 (3%)

Query: 14  VSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHI 72
           V++     +V  + ++K++GCQMN YDS +M D+  + +G E  ++ ++AD++++NTC I
Sbjct: 11  VARPSAPAVVRGKLYIKTHGCQMNEYDSAKMADVLAASEGLELTDNPEEADVVLVNTCSI 70

Query: 73  REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT 132
           REKA EKV+S LGR + LK      G  +++ V GCVA  EGE I++R+P V++V GPQT
Sbjct: 71  REKAQEKVFSQLGRWKALKAG----GKPVIIGVGGCVASQEGEAIVKRAPYVDLVFGPQT 126

Query: 133 YYRLPELL-ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCT 191
            +RLPEL+  R   GK  VD  +   +KF+RL        R  G +AF++I EGC K+C+
Sbjct: 127 LHRLPELIRARRESGKSQVDISFPEIEKFDRLP-----EPRAEGPSAFVSIMEGCSKYCS 181

Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK-----CT 246
           FCVVPYTRG E+SR    V+ E  +L   GV EI LLGQNVNA+RG              
Sbjct: 182 FCVVPYTRGEEVSRPFEDVLVEVAQLAAQGVREINLLGQNVNAYRGAYGADAGDAAQYAD 241

Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306
              L+ ++++I G+ R+R+TTSHP + SD L+ A+ D+  L  YLHLPVQ+GSDRIL +M
Sbjct: 242 LGLLIRTIAQIDGIGRIRFTTSHPLEFSDSLVDAYRDVPQLANYLHLPVQAGSDRILSAM 301

Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
            R +TA E++  I ++R+VRPDI+ISSDFIVGFPGET+ DF  TM L++ +G+ Q+FSF 
Sbjct: 302 KRGYTALEFKSKIRKLRAVRPDISISSDFIVGFPGETEADFEKTMKLIEDVGFDQSFSFV 361

Query: 367 YSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEK 425
           YS R GTP S++ +   E VK  RL  LQ  +     S + + VG +  VL+E    ++ 
Sbjct: 362 YSRRPGTPASDLQDDTPEAVKQARLARLQAHINAHAASISQSMVGSVQRVLVEGPSRRDP 421

Query: 426 GKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
            +L G+S  ++ V        IG  + V IT+   ++L G +
Sbjct: 422 NELTGKSENMRPVNFPGNPRLIGQFVDVLITEAMSNSLRGRI 463


>gi|149907590|ref|ZP_01896337.1| tRNA-i(6)A37 modification enzyme MiaB [Moritella sp. PE36]
 gi|149809260|gb|EDM69189.1| tRNA-i(6)A37 modification enzyme MiaB [Moritella sp. PE36]
          Length = 475

 Score =  480 bits (1236), Expect = e-133,   Method: Composition-based stats.
 Identities = 195/449 (43%), Positives = 281/449 (62%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++  +K++GCQMN YDS +M D+     G+E  ++ ++AD+++LNTC IREKA EKV+
Sbjct: 1   MSKKLHIKTWGCQMNEYDSSKMADLLNAENGFELTDNPEEADVLLLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR + LK    K    L++ V GCVA  EG  I +R+PIVN+V GPQT +RLPE++ 
Sbjct: 61  HQLGRWKKLK----KRNPKLIIGVGGCVASQEGAAIQKRAPIVNLVFGPQTLHRLPEMIV 116

Query: 142 RARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
            A+ GK+ +VD  +   +KF+RL        R  GV+AF++I EGC K+C+FCVVPYTRG
Sbjct: 117 DAQAGKKGLVDVSFPEIEKFDRLP-----EPRADGVSAFVSIMEGCSKYCSFCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR L  V+ E  +L + GV E+ LLGQN NA+RG   DG+ C+F+DLL  ++ I G+
Sbjct: 172 EEVSRPLDDVLYEIAQLAEQGVREVNLLGQNANAFRGDMHDGDICSFADLLRYVAAIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+RYTTSHP + +  +I+ + D   L+ +LHLPVQSGSDRIL  M R HT  EY+ +I 
Sbjct: 232 DRIRYTTSHPIEFTSDIIEVYKDTPELVSHLHLPVQSGSDRILTLMKRAHTTLEYKSLIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R  RP + +SSDFI+GFPGE+  DF  TM L++ I Y  +FSF YS R GTP +++ +
Sbjct: 292 KLRKARPGLVMSSDFIIGFPGESKQDFADTMKLIEDIEYDISFSFIYSARPGTPAADLPD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439
            V    K ERL  LQ ++ +         V     +L+E   K+   +L GR+   + V 
Sbjct: 352 DVSLEEKKERLKILQTRISQMSQKIGRDMVNTTQRILVEGPSKKNIMELTGRTENNRVVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG  + V I DV  +++ G  +
Sbjct: 412 FEGSPDLIGTFVDVDIVDVFPNSIRGVFI 440


>gi|253990619|ref|YP_003041975.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Photorhabdus
           asymbiotica subsp. asymbiotica ATCC 43949]
 gi|253782069|emb|CAQ85233.1| trna-methylthiotransferase miab protein [Photorhabdus asymbiotica]
          Length = 476

 Score =  480 bits (1236), Expect = e-133,   Method: Composition-based stats.
 Identities = 194/447 (43%), Positives = 294/447 (65%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ ++K++GCQMN YDS +M D+  S  GY+  +  ++AD+++LNTC IREKA EKV+  
Sbjct: 5   KKLYIKTWGCQMNEYDSSKMADLLESTHGYQLTDVAEEADILLLNTCSIREKAQEKVFHQ 64

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR +NLK+       D+++ V GCVA  EG+ I +R+  V+++ GPQT +RLPE++ + 
Sbjct: 65  LGRWKNLKD----TNPDIIIGVGGCVASQEGDFIRKRAQCVDIIFGPQTLHRLPEMINQV 120

Query: 144 RFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           +  +  VVD  +   +KF+RL        R  G +AF++I EGC+K+CTFCVVPYTRG E
Sbjct: 121 KGTRSPVVDISFPEIEKFDRLP-----EPRAEGPSAFVSIMEGCNKYCTFCVVPYTRGEE 175

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR    ++ E  +L   GV E+ LLGQNVNA+RG   DG+ C+F++LL  ++ I G+ R
Sbjct: 176 VSRPCDDILFEIAQLAAQGVREVNLLGQNVNAYRGATYDGDICSFAELLRLVAAIDGIDR 235

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP + +D +I  + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II ++
Sbjct: 236 IRFTTSHPIEFTDDIIAVYEDTPELVSFLHLPVQSGSDRILTLMKRAHTALEYKSIIRKL 295

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R  RPDI ISSDFI+GFPGET DDF  TM L+  + +  ++SF YS R GTP +++ + V
Sbjct: 296 RKARPDILISSDFIIGFPGETQDDFEKTMKLIADVNFDMSYSFIYSARPGTPAADLPDDV 355

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441
            E  K +RL  LQ+++ +Q ++++ A +G +  +L+E   ++   +L GR+   + V   
Sbjct: 356 SEEEKKQRLYLLQQRINQQAMNYSRAMLGSVQRILVEGTSRKNVMELSGRTENNRVVNFE 415

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
            +   IG  + V I DV  ++L G+++
Sbjct: 416 GQPDMIGKFVDVEIVDVYANSLRGKVI 442


>gi|238920797|ref|YP_002934312.1| tRNA-I(6) [Edwardsiella ictaluri 93-146]
 gi|238870366|gb|ACR70077.1| tRNA-I(6) [Edwardsiella ictaluri 93-146]
          Length = 474

 Score =  480 bits (1236), Expect = e-133,   Method: Composition-based stats.
 Identities = 199/449 (44%), Positives = 289/449 (64%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++  +K++GCQMN YDS ++ D+  S  G E  ++ +DAD+++LNTC IREKA EKV+
Sbjct: 1   MTKKLHIKTWGCQMNEYDSSKIADLLGSTHGLELTDNAEDADVLLLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR + LK +      DL++ V GCVA  EGE I  R+  V+++ GPQT +RLPE+++
Sbjct: 61  HQLGRWKMLKEA----KPDLIIGVGGCVASQEGEHIRERASFVDIIFGPQTLHRLPEMID 116

Query: 142 RARFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
            AR     VVD  +   +KF+RL        R  G TAF++I EGC+K+CT+CVVPYTRG
Sbjct: 117 SARSSHGPVVDVSFPEIEKFDRLP-----EPRADGATAFVSIMEGCNKYCTYCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR    V+ E  +L   GV E+ LLGQNVNA+RG   DG  C+F++LL  ++ I G+
Sbjct: 172 AEVSRPCDDVLFEIAQLAAQGVREVNLLGQNVNAYRGATFDGGICSFAELLRLVAAIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+TTSHP + SD ++  + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II 
Sbjct: 232 DRIRFTTSHPIEFSDDIVAVYEDTPELVSFLHLPVQSGSDRILNLMKRTHTALEYKAIIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R  RPDI ISSDFIVGFPGET  DF  TM L+ ++ +  ++SF +S R GTP ++ML+
Sbjct: 292 KLRRARPDIQISSDFIVGFPGETQQDFEQTMQLIAEVDFDMSYSFIFSARPGTPAADMLD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439
            V E  K +RL  LQ+++ +Q + ++   +G +  +L+E   ++   +L GR+   + V 
Sbjct: 352 DVAEEEKKQRLYILQERINQQAMRYSRHMLGTVQRILVEGTSRKNVMELSGRTENNRVVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
              +   IG  + V IT V  ++L G +V
Sbjct: 412 FAGQPEMIGRFVDVEITGVLPNSLRGVVV 440


>gi|220935460|ref|YP_002514359.1| 2-alkenal reductase [Thioalkalivibrio sp. HL-EbGR7]
 gi|219996770|gb|ACL73372.1| 2-alkenal reductase [Thioalkalivibrio sp. HL-EbGR7]
          Length = 453

 Score =  480 bits (1235), Expect = e-133,   Method: Composition-based stats.
 Identities = 201/448 (44%), Positives = 282/448 (62%), Gaps = 12/448 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           +  + +++++GCQMN YDS +M D+   S+G    +  + AD+++LNTC IREKA EKV+
Sbjct: 1   MSSKVYIQTHGCQMNEYDSGKMLDVLRESEGMVLTDDPEQADVLLLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S LGR R LK +R      +   V    A  EGE +  R+P V+VV GPQT +RLPE++ 
Sbjct: 61  SLLGRWRALKEARPGVVIGVGGCV----ASQEGEALRERAPFVDVVFGPQTLHRLPEMVR 116

Query: 142 RAR-FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
            AR  G  VVD  +   +KF+RL        R  G +AF++I EGC K+CTFCVVPYTRG
Sbjct: 117 SARLKGLPVVDISFPEIEKFDRLP-----EPRAEGPSAFVSIMEGCSKYCTFCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            EISR    V+ E  +L   GV EI LLGQNVNA+RG   DGE    + L++ ++ + G+
Sbjct: 172 EEISRPFDDVLAEVAQLAAQGVREINLLGQNVNAYRGPMHDGEIADLALLIHYVAAVDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+TTSHP + SD LI+A  ++  L+ ++HLPVQSGSDRIL +M R HTA EY+  I 
Sbjct: 232 ERIRFTTSHPVEFSDSLIRAFAEVPELVSHVHLPVQSGSDRILAAMKRGHTALEYKSKIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           R+R  RPDI++SSDFIVGFPGETD DF ATM+L++++G+ Q+FSF YS R GTP S++ +
Sbjct: 292 RLREARPDISLSSDFIVGFPGETDADFEATMELIEQVGFDQSFSFIYSRRPGTPASSLPD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVV 439
            V   VK  RL  LQ ++ E   + + + VG    +L+E    K+  ++ GR+   + V 
Sbjct: 352 DVPLEVKKARLARLQARINEMAQAISQSMVGSRQRILVEGPSKKDPAQMAGRTANNRVVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGEL 467
            +      G  + V IT    ++L G L
Sbjct: 412 FDGAAELAGRFVDVHITQALANSLRGRL 439


>gi|24372764|ref|NP_716806.1| tRNA-i(6)A37 modification enzyme MiaB [Shewanella oneidensis MR-1]
 gi|81446317|sp|Q8CX45|MIAB_SHEON RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|24346842|gb|AAN54251.1|AE015562_1 tRNA-i(6)A37 modification enzyme MiaB [Shewanella oneidensis MR-1]
          Length = 474

 Score =  480 bits (1235), Expect = e-133,   Method: Composition-based stats.
 Identities = 196/449 (43%), Positives = 287/449 (63%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++  +K++GCQMN YDS +M D+    QGY      ++AD+++LNTC IREKA EKV+
Sbjct: 1   MSKKLHIKTWGCQMNEYDSSKMADLLGEYQGYTLTEEAEEADILLLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR + LK+       DL++ V GCVA  EG+ I  R+  V+++ GPQT +RLPE++E
Sbjct: 61  HQLGRWKTLKDK----NPDLIIGVGGCVASQEGKAIKDRAQCVDIIFGPQTLHRLPEMIE 116

Query: 142 RARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           + R G++ V+D  +   +KF+RL        R  G TAF++I EGC K+C+FCVVPYTRG
Sbjct: 117 QVRRGEKAVIDVSFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCSKYCSFCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR    ++ E  +L + GV E+ LLGQNVNA+RG   DG  CTF++LL  ++ I G+
Sbjct: 172 EEVSRPSDDIILEIAQLAEQGVREVNLLGQNVNAYRGATHDGGICTFAELLRYVAAIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+TTSHP + +  +I  + D   L+ +LHLPVQSGSDRIL +M R H A EY+ II 
Sbjct: 232 DRIRFTTSHPIEFTQDIIDVYEDTPELVSFLHLPVQSGSDRILTAMKRGHMAIEYKSIIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           R+R  RPDI ISSDFI+GFPGET +DF  TM L++ + +  +FSF YS R GTP +++ +
Sbjct: 292 RLRKARPDIQISSDFIIGFPGETQEDFADTMKLIEDVAFDHSFSFIYSARPGTPAADLPD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVV 439
            VD   K +RL  LQ ++ +Q + ++   +G +  +L+E    K   +L GR+   + V 
Sbjct: 352 DVDMEEKKQRLAILQDRITQQAMRYSRHMMGTVQRILVEGPSVKNPMELRGRTENNRVVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                 +IG  + V I DV  ++L G+ +
Sbjct: 412 FEGLPKHIGTFVDVEIVDVYTNSLRGKFI 440


>gi|113969348|ref|YP_733141.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Shewanella sp.
           MR-4]
 gi|123130674|sp|Q0HLI3|MIAB_SHESM RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|113884032|gb|ABI38084.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Shewanella sp. MR-4]
          Length = 474

 Score =  480 bits (1235), Expect = e-133,   Method: Composition-based stats.
 Identities = 195/449 (43%), Positives = 287/449 (63%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++  +K++GCQMN YDS +M D+    QGY      ++AD+++LNTC IREKA EKV+
Sbjct: 1   MSKKLHIKTWGCQMNEYDSSKMADLLGEYQGYTLTEEAEEADILLLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR + LK+       DL++ V GCVA  EG+ I  R+  V+++ GPQT +RLP+++E
Sbjct: 61  HQLGRWKTLKDK----NPDLIIGVGGCVASQEGKAIKDRAHCVDIIFGPQTLHRLPDMIE 116

Query: 142 RARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           + R G++ V+D  +   +KF+RL        R  G TAF++I EGC K+C+FCVVPYTRG
Sbjct: 117 QVRRGEKAVIDVSFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCSKYCSFCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR    ++ E  +L + GV E+ LLGQNVNA+RG   DG  CTF++LL  ++ I G+
Sbjct: 172 EEVSRPSDDIILEIAQLAEQGVREVNLLGQNVNAYRGATHDGGICTFAELLRYVAAIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+TTSHP + +  +I  + D   L+ +LHLPVQSGSDRIL +M R H A EY+ II 
Sbjct: 232 DRIRFTTSHPIEFTQDIIDVYEDTPELVSFLHLPVQSGSDRILTAMKRGHMAIEYKSIIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           R+R  RPDI ISSDFI+GFPGET +DF  TM L++ + +  +FSF YS R GTP +++ +
Sbjct: 292 RLRKARPDIQISSDFIIGFPGETKEDFADTMKLIEDVAFDHSFSFIYSARPGTPAADLPD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVV 439
            VD   K +RL  LQ ++ +Q + ++   +G +  +L+E    K   +L GR+   + V 
Sbjct: 352 DVDMEEKKQRLAILQDRITQQAMRYSRHMMGTVQRILVEGPSVKNPMELRGRTENNRVVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                 +IG  + V I DV  ++L G+ +
Sbjct: 412 FEGLPKHIGSFVDVEIVDVYTNSLRGKFI 440


>gi|292493861|ref|YP_003529300.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Nitrosococcus halophilus
           Nc4]
 gi|291582456|gb|ADE16913.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Nitrosococcus halophilus
           Nc4]
          Length = 447

 Score =  480 bits (1235), Expect = e-133,   Method: Composition-based stats.
 Identities = 199/449 (44%), Positives = 293/449 (65%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++ ++K++GCQMN YDS RM D+     G E  +  + A++++LNTC +REKA EKV+
Sbjct: 1   MAKKLYIKTHGCQMNEYDSTRMADVLRQSHGLELTSDPEQAEVLLLNTCSVREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S LGR R  K +R     +L++ V GCVA  EGE I  R+P V++V GPQT +RLP +L 
Sbjct: 61  SQLGRWRQWKQAR----PELIIGVGGCVASQEGETIRARAPYVDLVFGPQTIHRLPAMLT 116

Query: 142 RARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           +     + V+D  +   +KF++L        R  G  AF+++ EGC K+C+FCVVPYTRG
Sbjct: 117 QVSGNHQPVIDISFPEIEKFDKLP-----EPRAEGPMAFVSVMEGCSKYCSFCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            EISR L  V+ E   L + GV E+TLLGQNVNA+RG   +G+    + L+  ++ I+G+
Sbjct: 172 EEISRPLDDVIAEIVDLAEQGVREVTLLGQNVNAYRGPMGEGDIADLALLITYVASIEGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+TTSHP + SD LI+A  ++  L+ +LHLPVQSGSDRIL  M R HT  EY+  + 
Sbjct: 232 ERIRFTTSHPVEFSDSLIQAFAEVPELVSHLHLPVQSGSDRILSLMKRGHTVLEYKAKLR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           R+R VRPDI+ISSDFI+G PGET+ DF+AT+ LVD++G+  +FSF YSPR GTP +++ +
Sbjct: 292 RLRQVRPDISISSDFIIGLPGETEADFQATLALVDEVGFDHSFSFIYSPRPGTPAASLPD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVV 439
           +V   VK ERL  LQ++LR  +++ +   V  + +VL+E+   K+   L GR+   + V 
Sbjct: 352 EVPMAVKKERLGILQERLRASEMTISQGMVDTVQQVLVERSSKKDPAMLAGRTANNRVVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
             +    IG  + VRIT+   ++L G ++
Sbjct: 412 FPATQGLIGKFVNVRITEALPNSLRGVVI 440


>gi|188534464|ref|YP_001908261.1| Putative tRNA-thiotransferase [Erwinia tasmaniensis Et1/99]
 gi|188029506|emb|CAO97383.1| Putative tRNA-thiotransferase [Erwinia tasmaniensis Et1/99]
          Length = 480

 Score =  480 bits (1235), Expect = e-133,   Method: Composition-based stats.
 Identities = 194/452 (42%), Positives = 289/452 (63%), Gaps = 12/452 (2%)

Query: 17  IVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREK 75
           + +   + ++  +K++GCQMN YDS +M D+  S  GY      +DAD+++LNTC IREK
Sbjct: 1   MTNGKSMTKKLHIKTWGCQMNEYDSSKMADLLNSTHGYTLTEQAEDADVLLLNTCSIREK 60

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135
           A EKV++ LGR + LK S      D+++ V GCVA  EG +I +R+  V++V GPQT +R
Sbjct: 61  AQEKVFALLGRWKKLKES----NPDMIIGVGGCVASQEGAQIRQRASCVDIVFGPQTLHR 116

Query: 136 LPELLERARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCV 194
           LPE++   R  +  VVD  +   +KF+R+        R  G TAF++I EGC+K+CTFCV
Sbjct: 117 LPEMINSVRGTRSPVVDVSFPEIEKFDRMP-----EPRADGPTAFVSIMEGCNKYCTFCV 171

Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL 254
           VPYTRG E+SR    ++ E  +L   GV E+ LLGQNVNA+RG+  DG  C+F++LL  +
Sbjct: 172 VPYTRGEEVSRPSDDILFEVAQLAAQGVREVNLLGQNVNAYRGETFDGGICSFAELLRLV 231

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
           + I G+ R+R+TTSHP + +D +I  + D   L+ +LHLPVQSG+DRIL  M R HTA E
Sbjct: 232 AAIDGIDRIRFTTSHPIEFNDDIIDVYRDTPELVSFLHLPVQSGADRILTLMKRAHTALE 291

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
           Y+ II ++ + RP+I ISSDFI+GFPGET  DF  TM L+ +I +  ++SF YS R GTP
Sbjct: 292 YKAIIRKLLAARPNIQISSDFIIGFPGETQADFEQTMKLIGEINFDISYSFIYSARPGTP 351

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSP 433
            +++ + V E+ K +RL  LQ ++ +Q  +++   +G +  +L+E   ++   +L GR+ 
Sbjct: 352 AADLPDDVSEDEKKQRLYILQDRINQQTTAWSRRKLGTVQRILVEGTSRKNVMELSGRTE 411

Query: 434 WLQSVVLNSKNHNIGDIIKVRITDVKISTLYG 465
             + V       +IG  + V ITDV  ++L G
Sbjct: 412 CNRVVNFEGSPEHIGKFVDVEITDVYANSLRG 443


>gi|224827052|ref|ZP_03700149.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Lutiella nitroferrum
           2002]
 gi|224600718|gb|EEG06904.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Lutiella nitroferrum
           2002]
          Length = 444

 Score =  480 bits (1235), Expect = e-133,   Method: Composition-based stats.
 Identities = 197/448 (43%), Positives = 286/448 (63%), Gaps = 12/448 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ ++K++GCQMN YDS +M D+   ++G  + ++ ++AD+I+ NTC +REKA EKV+S 
Sbjct: 2   KKVYIKTFGCQMNEYDSDKMVDVLGDAEGMVKTDNPEEADVILFNTCSVREKAQEKVFSD 61

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-ER 142
           LGRIR LK++R     DL++ V GCVA  EG+ I++R+P V+VV GPQT +RLPEL+  +
Sbjct: 62  LGRIRPLKDAR----PDLIIGVGGCVASQEGDTIVKRAPYVDVVFGPQTLHRLPELIRAK 117

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
              G   VD  +   +KF+ +        +  G  AF++I EGC K+C+FCVVPYTRG E
Sbjct: 118 QDSGAAQVDISFPEIEKFDHIPPA-----KVDGGAAFVSIMEGCSKYCSFCVVPYTRGEE 172

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR    V+ E   L   GV EITLLGQNVNA+RG   DGE   F+ LL  + E+ G+ R
Sbjct: 173 VSRPFDDVLTEIAGLAAQGVKEITLLGQNVNAYRGLMADGEIADFALLLEYVHEVPGVER 232

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHPR+ S  +I  +  L  L+ +LHLPVQSG DR+L +M R +TA EY+ II ++
Sbjct: 233 IRFTTSHPREFSQRIIDCYAKLPKLVSHLHLPVQSGCDRVLMAMKRGYTALEYKSIIRKL 292

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R++RPD+ +SSDFIVGFPGET+DDF AT+ LV  + +  +F F YSPR GTP +N+ +  
Sbjct: 293 RAIRPDLCLSSDFIVGFPGETEDDFNATLKLVKDLEFDFSFVFIYSPRPGTPAANLPDDT 352

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLN 441
               K  RL  L + +  +  + N + VG +  VL+E    K+   L  R+   + V   
Sbjct: 353 PHEEKVRRLEALNEVIEAKGFAINQSMVGTVQRVLVEAVSKKDPNMLAARTMNNRVVNFI 412

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELVV 469
                +  +I+VRIT+ +  +L GE+V 
Sbjct: 413 GNPRLLNQMIEVRITEARPHSLAGEIVT 440


>gi|107023628|ref|YP_621955.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Burkholderia
           cenocepacia AU 1054]
 gi|116690713|ref|YP_836336.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia cenocepacia
           HI2424]
 gi|170734056|ref|YP_001766003.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Burkholderia
           cenocepacia MC0-3]
 gi|254247273|ref|ZP_04940594.1| hypothetical protein BCPG_02060 [Burkholderia cenocepacia PC184]
 gi|123244709|sp|Q1BTS3|MIAB_BURCA RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|229890456|sp|B1JY57|MIAB_BURCC RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|229890457|sp|A0KAB6|MIAB_BURCH RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|105893817|gb|ABF76982.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia cenocepacia
           AU 1054]
 gi|116648802|gb|ABK09443.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia cenocepacia
           HI2424]
 gi|124872049|gb|EAY63765.1| hypothetical protein BCPG_02060 [Burkholderia cenocepacia PC184]
 gi|169817298|gb|ACA91881.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia cenocepacia
           MC0-3]
          Length = 457

 Score =  480 bits (1235), Expect = e-133,   Method: Composition-based stats.
 Identities = 196/456 (42%), Positives = 291/456 (63%), Gaps = 18/456 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++ +VK++GCQMN YDS +M D+   ++G E+ ++ +DAD+I+ NTC +REKA EKV+
Sbjct: 1   MTKKVYVKTFGCQMNEYDSDKMVDVLNAAEGLEKTDTPEDADIILFNTCSVREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S LGR+R LK +       LL+ V GCVA  EG  I+ R+P V++V GPQT +RLP++++
Sbjct: 61  SDLGRVRELKEA----KPGLLIGVGGCVASQEGASIVSRAPYVDLVFGPQTLHRLPQMID 116

Query: 142 RARF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
             R  G+  VD  +   +KF+ L        R  G +AF++I EGC K+C++CVVPYTRG
Sbjct: 117 ARRASGRAQVDITFPEIEKFDHLPPA-----RVEGPSAFVSIMEGCSKYCSYCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG--EKCTFSDLLYSLSEIK 258
            E+SR L  V+ E   L D GV E+TLLGQNVNA+RG    G  +   F+ L+  +++I 
Sbjct: 172 DEVSRPLDDVLTEVAGLADQGVREVTLLGQNVNAYRGALTAGSTDIADFATLIEYVADIP 231

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           G+ R+RYTTSHP++ +  LI  +  +  L+ +LHLPVQ GSDRIL +M R +T  EY+ +
Sbjct: 232 GIERIRYTTSHPKEFTQRLIDTYAKVPKLVSHLHLPVQHGSDRILMAMKRGYTVLEYKSV 291

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           I ++R++RPD+++S+D IVGFPGET+DDF   M LV ++GY  +FSF YSPR GTP +N+
Sbjct: 292 IRKLRAIRPDLSLSTDMIVGFPGETEDDFDKMMALVHEMGYDTSFSFIYSPRPGTPAANL 351

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQS 437
            +     VK +RL  LQ  + E     + + VG++  +L+E    K+  +L GR+   + 
Sbjct: 352 ADDTPREVKLKRLQHLQATIEENVARISQSMVGKVERILVEGPSRKDPNELAGRTENNRV 411

Query: 438 VVLNSK----NHNIGDIIKVRITDVKISTLYGELVV 469
           V   +        IG +I V+I      +L GELV+
Sbjct: 412 VNFPAPLASHPRLIGQMIDVKINHAYPHSLRGELVL 447


>gi|296282491|ref|ZP_06860489.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Citromicrobium
           bathyomarinum JL354]
          Length = 445

 Score =  480 bits (1235), Expect = e-133,   Method: Composition-based stats.
 Identities = 234/450 (52%), Positives = 314/450 (69%), Gaps = 11/450 (2%)

Query: 18  VDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA 77
           +     P+ + VKS+GCQMNVYD  RM ++  +QG       ++ADL+VLNTCHIREKA 
Sbjct: 1   MKPTNTPKTYRVKSFGCQMNVYDGERMGELLAAQGITPAPEGEEADLVVLNTCHIREKAT 60

Query: 78  EKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLP 137
           EKVYS +GR+R       ++G   L+ VAGCVAQAEG EI+ R+P V++VVGPQ Y  LP
Sbjct: 61  EKVYSDIGRLRR------EDGSSPLIAVAGCVAQAEGREIMTRAPAVSMVVGPQAYQNLP 114

Query: 138 ELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197
            +LERA  GKR  + D + E KF  L        R     AFLTIQEGCDKFCT+CVVPY
Sbjct: 115 AMLERAVSGKRTTEMDLAAEAKFAGLP-----QRRTAPAAAFLTIQEGCDKFCTYCVVPY 169

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257
           TRG EISR  +++V EA++L++ G  EITLLGQNV+AW G+   G +   + L+  L++I
Sbjct: 170 TRGAEISRPFAELVAEAQRLVEGGAREITLLGQNVSAWSGEDAKGHRTGLAGLVRELAKI 229

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
            GL R+RYTTSHP DM + +I AHG+LD LMPYLHLPVQ+G++R+LK+MNR HT   Y Q
Sbjct: 230 DGLARIRYTTSHPADMDEEIIAAHGELDKLMPYLHLPVQAGNNRVLKAMNRSHTVESYLQ 289

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
           +++R R+ RPD+A+S DFIVGFPGET+ +F  T+ +VD++ YAQAFSFKYSPR GTP + 
Sbjct: 290 LLERFRAARPDLALSGDFIVGFPGETEAEFEDTLKVVDEVRYAQAFSFKYSPRPGTPAAG 349

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQS 437
           M  Q+  +V  +RL  LQ +L   Q +FN A V +  EVL+E+ GK  G+ +G+SPWLQS
Sbjct: 350 MDGQIAPDVMKDRLARLQDRLNRDQHAFNTASVSKTCEVLVERKGKLPGQWLGKSPWLQS 409

Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
           V    ++  +GD+++VR+ +   ++L GEL
Sbjct: 410 VFFEREDTQVGDLVQVRLEEAGPNSLRGEL 439


>gi|152979971|ref|YP_001352121.1| tRNA modifying enzyme [Janthinobacterium sp. Marseille]
 gi|229890610|sp|A6SV24|MIAB_JANMA RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|151280048|gb|ABR88458.1| tRNA modifying enzyme [Janthinobacterium sp. Marseille]
          Length = 446

 Score =  480 bits (1235), Expect = e-133,   Method: Composition-based stats.
 Identities = 200/453 (44%), Positives = 295/453 (65%), Gaps = 15/453 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++ ++K++GCQMN YDS +M D+   S+G  + ++ +DAD+I+LNTC +REKA EKV+
Sbjct: 1   MQKKIYIKTFGCQMNEYDSDKMVDVLNASEGLIKTDTPEDADVILLNTCSVREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S LGR+R LK        DL++ V GCVA  EG+ I++R+P V++V GPQT +RLPE+L+
Sbjct: 61  SDLGRLRELK----FNNPDLVIGVGGCVASQEGDAIVKRAPYVDLVFGPQTLHRLPEMLK 116

Query: 142 RARF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           + R  G+  VD  +   +KF+ +        +  G TAF++I EGC K+C++CVVPYTRG
Sbjct: 117 QRRSTGRSQVDISFPEIEKFDHMPPA-----KVEGATAFVSIMEGCSKYCSYCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR    V+ E   L   GV EITLLGQNVNA+RG+  DGE   F+ L+  ++E++G+
Sbjct: 172 EEVSRRFEDVLAEVAGLEAQGVKEITLLGQNVNAYRGEMADGEIADFALLIEYIAELEGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+ TSHP++ +  LI A+  +  L+ +L+LP Q GSDRIL +M R +T+ EY+ I+ 
Sbjct: 232 ERIRFVTSHPKEFTQRLIDAYAKVPKLVNHLYLPAQHGSDRILAAMKRGYTSLEYKSILR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           R+R VRP+I+ISSDFIVGFPGETD DF A M L++ IGY  +FSF +SPR GTP +N+ +
Sbjct: 292 RLREVRPNISISSDFIVGFPGETDADFEAMMKLINDIGYDNSFSFIFSPRPGTPAANLED 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVV 439
                VK +RL  LQ  + +    ++D  VG +  +L+E    K+  +L GR+   + V 
Sbjct: 352 DTPHEVKLQRLQRLQAVIDQNTRRYSDEMVGTVQRILVEGPSKKDPDELQGRTENNRVVN 411

Query: 440 LNSKNH---NIGDIIKVRITDVKISTLYGELVV 469
             +  H    IG ++ V I      TL GE++V
Sbjct: 412 FAAGEHGARLIGQMVDVNIVQSFAYTLRGEIIV 444


>gi|296134800|ref|YP_003642042.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Thiomonas intermedia K12]
 gi|295794922|gb|ADG29712.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Thiomonas intermedia K12]
          Length = 439

 Score =  480 bits (1235), Expect = e-133,   Method: Composition-based stats.
 Identities = 207/448 (46%), Positives = 292/448 (65%), Gaps = 15/448 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++ F+K++GCQMN YDS +M D+   ++GYE   +  +ADLI+LNTC IREKA EKV+
Sbjct: 1   MTKKVFIKTFGCQMNEYDSAKMADVLSAAEGYEPAATPQEADLILLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL- 140
           S LGR+R LK     +  +LL+ V GCVA  EGE I++R+P V++V GPQT +RLP+L+ 
Sbjct: 61  SDLGRLRELKA----DKPNLLIGVGGCVASQEGEAIVKRAPYVDLVFGPQTLHRLPQLIA 116

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           +R   G+  VD  +   +KF+ L        R  G +AF++I EGC K+C++CVVPYTRG
Sbjct: 117 QRQALGRAQVDISFPEIEKFDHLPPA-----RVEGPSAFVSIMEGCSKYCSYCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR L  V+ E  +L   GV E+TLLGQNVNAW G    GE   F+ LL  ++EI G+
Sbjct: 172 EEVSRPLVDVLTEVAELASLGVREVTLLGQNVNAWLGS---GEGEDFAFLLECVAEIDGI 228

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+RYTTSHP++ +  LI A+G +  L+ ++HLPVQ GSDRIL +M R +TA E++ I+ 
Sbjct: 229 ERIRYTTSHPKEFTQRLIDAYGRIPKLVNHVHLPVQHGSDRILAAMKRGYTALEFKSIVR 288

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           R+R+VRPDI I SDFIVGFPGET+ DF   M L++ + +  +FSF +SPR GTP +N+ +
Sbjct: 289 RLRAVRPDICIGSDFIVGFPGETEADFAQLMKLIEDMQFDASFSFIFSPRPGTPAANLAD 348

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVV 439
               +VK +RL  LQ ++  Q  + + A V     VLIE    K+  +L GR+   + V 
Sbjct: 349 DTPADVKLKRLQTLQAQIETQASAISAAMVDTEQAVLIEGPSKKDPSELQGRTENNRIVH 408

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGEL 467
           L +    IG I+ VRIT     +L GE+
Sbjct: 409 LKANARLIGQIVPVRITTAYPHSLRGEV 436


>gi|82703805|ref|YP_413371.1| tRNA-i(6)A37 modification enzyme MiaB [Nitrosospira multiformis
           ATCC 25196]
 gi|123754233|sp|Q2Y5J2|MIAB_NITMU RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|82411870|gb|ABB75979.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Nitrosospira multiformis
           ATCC 25196]
          Length = 474

 Score =  480 bits (1235), Expect = e-133,   Method: Composition-based stats.
 Identities = 205/450 (45%), Positives = 288/450 (64%), Gaps = 15/450 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGY-ERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++ ++K++GCQMN YDS +M D+     + E+ +    AD+I+ NTC +REKA EKV+
Sbjct: 1   MAKKLYIKTFGCQMNEYDSKKMADVLRDAQHMEKTDDPAAADVILFNTCSVREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR+R+LK +      DLL+ V GCVA  EG EI++R+P V++V GPQT +RLP+++ 
Sbjct: 61  HDLGRVRHLKAA----NPDLLIGVGGCVASQEGAEIVKRAPYVDLVFGPQTLHRLPQMIS 116

Query: 142 -RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
            R   G+  VD  +   +KF+ L        R  GVTAF++I EGC K+C+FCVVPYTRG
Sbjct: 117 TRQITGRPQVDISFPEIEKFDHLPPA-----RTEGVTAFVSIMEGCSKYCSFCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG---LDGEKCTFSDLLYSLSEI 257
            EISR L  ++ E   L + GV E+TLLGQNVNA+RG+     +GE   F+ LL  L EI
Sbjct: 172 EEISRPLDDILTEIAGLTNLGVKEVTLLGQNVNAYRGRMQYAEEGELADFALLLEYLHEI 231

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
            G+ R+RYTTSHPR+ +  LI+A+     L+ ++HLPVQSGSDRIL +M R +T+ EY+ 
Sbjct: 232 PGIERIRYTTSHPREFTPRLIEAYKASPKLVSHVHLPVQSGSDRILAAMKRGYTSLEYKS 291

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
           II R+R+ RPDI+I+SDFIVGFPGET+ DF ATM L++ + +  +FSF YS R GTP + 
Sbjct: 292 IIRRLRAARPDISITSDFIVGFPGETEADFEATMKLIEAVNFDGSFSFIYSSRPGTPAAG 351

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQ 436
           + +     VK ERL  LQ+K+  Q  + +   VG    VL+E    K+ G+L GR+   +
Sbjct: 352 LEDTTPHQVKLERLQRLQEKVELQAQAISVRMVGTTQRVLVEGLSRKDPGELSGRTDNNR 411

Query: 437 SVVLNSKNHNIGDIIKVRITDVKISTLYGE 466
            V        IG   +++IT     TL GE
Sbjct: 412 VVNFPGSPEMIGKFAELKITAALSHTLRGE 441


>gi|54310003|ref|YP_131023.1| putative 2-methylthioadenine synthetase [Photobacterium profundum
           SS9]
 gi|81398996|sp|Q6LNA5|MIAB_PHOPR RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|46914442|emb|CAG21221.1| putative 2-methylthioadenine synthetase [Photobacterium profundum
           SS9]
          Length = 474

 Score =  479 bits (1234), Expect = e-133,   Method: Composition-based stats.
 Identities = 198/449 (44%), Positives = 286/449 (63%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           +P++  +K++GCQMN YDS +M D+   + G+E     ++AD+++LNTC IREKA EKV+
Sbjct: 1   MPKKLLIKTWGCQMNEYDSSKMADLLNAANGFELTEVPEEADVLLLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR + LK        DL++ V GCVA  EG+ I +R+P V+V+ GPQT +RLP++++
Sbjct: 61  HQLGRWKRLKEK----KPDLVIGVGGCVATQEGDAIRKRAPYVDVIFGPQTLHRLPQMIK 116

Query: 142 RARFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
            ++     V+D  +   +KF+ L        R  GVTAF++I EGC K+CT+CVVPYTRG
Sbjct: 117 DSQSNHGPVMDISFPEVEKFDNLP-----EPRADGVTAFVSIMEGCSKYCTYCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR +  V+ E  +L + GV E+ LLGQNVNA+RG   DGE  +F++LL  ++ I G+
Sbjct: 172 EEVSRPIDDVLYEVAQLAEQGVREVNLLGQNVNAFRGPTHDGEMASFAELLRLVAAIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+RYTTSHP + +D +I+ + D   L+ YLHLPVQSGSDRIL  M R HT  EY+  I 
Sbjct: 232 DRIRYTTSHPIEFTDDIIEVYTDTPELVNYLHLPVQSGSDRILTMMKRPHTVLEYKSKIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R VRPDI +SSDFIV FPGE+D DF+ TM L+  I +  ++SF +SPR GTP ++   
Sbjct: 292 KLRKVRPDITMSSDFIVAFPGESDQDFQDTMKLIRDIDFDISYSFVFSPRPGTPAADYPC 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439
            + E VK ERL  LQ+++  Q +      +     +L+E   ++   +L GR+   + V 
Sbjct: 352 DISEKVKKERLYELQQQINTQAMRHARQMLNTEQRILVEGPSRKNIMELRGRTENNRIVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG  + V ITDV  ++L GELV
Sbjct: 412 FEGSAELIGQFVDVNITDVFTNSLRGELV 440


>gi|83313562|ref|YP_423826.1| (dimethylallyl)adenosine tRNA methylthiotransferase
           [Magnetospirillum magneticum AMB-1]
 gi|123726842|sp|Q2VYQ8|MIAB_MAGMM RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|82948403|dbj|BAE53267.1| 2-methylthioadenine synthetase [Magnetospirillum magneticum AMB-1]
          Length = 438

 Score =  479 bits (1234), Expect = e-133,   Method: Composition-based stats.
 Identities = 239/444 (53%), Positives = 323/444 (72%), Gaps = 10/444 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + +R FVK+YGCQMNVYDS RM D+    GY   +  ++AD+++LNTCHIREKAAEKV+S
Sbjct: 1   MAKRLFVKTYGCQMNVYDSARMADVLAPLGYGPADHAEEADMVILNTCHIREKAAEKVFS 60

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            LGR+R L+ ++ + GG +++ VAGCVAQAEGEEILRR+P V++V+GPQTY+RLPE++ +
Sbjct: 61  ELGRLRKLQAAKAEAGGRMILAVAGCVAQAEGEEILRRAPFVDIVLGPQTYHRLPEMVAQ 120

Query: 143 A-RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           A R G  V+DT++  E KF+ L           G +AFL++QEGCDKFCTFCVVPYTRG 
Sbjct: 121 AARAGGAVLDTEFPAEPKFDFLP-----EPHAEGTSAFLSVQEGCDKFCTFCVVPYTRGA 175

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR  + V+ EA  L   GV EITLLGQNVN W G    GE      L+ +L+E++G+ 
Sbjct: 176 EYSRPAAAVLAEAATLAAGGVREITLLGQNVNGWHG----GEGWGLGRLIRALAEVEGVE 231

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+RYTTSHPRDM D LI+AH +L  LMP+LHLPVQSGSDRIL +MNR H    Y +++D+
Sbjct: 232 RIRYTTSHPRDMDDELIRAHAELPQLMPFLHLPVQSGSDRILAAMNRGHDRDTYLRLVDK 291

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           ++S  PD+A+SSDFIVGFPGE+D DF A+MDL+ ++G+ Q +SFKYSPR GTP + M  Q
Sbjct: 292 LKSACPDLALSSDFIVGFPGESDADFEASMDLIRRVGFVQTYSFKYSPRPGTPAAAMETQ 351

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           V E VK ERL  +Q  L +Q + FN ACVG+ + +L+++ G+  G+L+GRSP++Q V + 
Sbjct: 352 VPEAVKDERLAQVQALLLDQTMRFNHACVGREMRILLDRPGRHAGQLLGRSPYMQPVHVK 411

Query: 442 SKNHNIGDIIKVRITDVKISTLYG 465
           +  H IG ++ +RIT V  ++L  
Sbjct: 412 AAAHLIGTVVPLRITKVHPNSLEA 435


>gi|90414094|ref|ZP_01222077.1| putative 2-methylthioadenine synthetase [Photobacterium profundum
           3TCK]
 gi|90324889|gb|EAS41417.1| putative 2-methylthioadenine synthetase [Photobacterium profundum
           3TCK]
          Length = 474

 Score =  479 bits (1234), Expect = e-133,   Method: Composition-based stats.
 Identities = 196/449 (43%), Positives = 283/449 (63%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           +P++  +K++GCQMN YDS +M D+   + G+E     ++AD+++LNTC IREKA EKV+
Sbjct: 1   MPKKLLIKTWGCQMNEYDSSKMADLLNAANGFELTEVPEEADVLLLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR + LK        DL++ V GCVA  EG+ I +R+P V+V+ GPQT +RLP++++
Sbjct: 61  HQLGRWKRLKEK----KPDLVIGVGGCVATQEGDSIRKRAPYVDVIFGPQTLHRLPQMIK 116

Query: 142 RARFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
            ++     V+D  +   +KF+ L        R  G TAF++I EGC K+CT+CVVPYTRG
Sbjct: 117 NSQSNHGPVMDISFPEVEKFDNLP-----EPRADGATAFVSIMEGCSKYCTYCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR +  V+ E  +L + GV E+ LLGQNVNA+RG   DG+  TF++LL  ++ I G+
Sbjct: 172 EEVSRPIDDVLYEIAQLAEQGVREVNLLGQNVNAFRGPTHDGDMATFAELLRLVAAIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+RYTTSHP + +D +I  + D   L+ YLHLPVQSGSDRIL  M R HT  EY+  I 
Sbjct: 232 DRIRYTTSHPIEFTDDIIDVYTDTPELVNYLHLPVQSGSDRILTMMKRPHTVLEYKSKIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R VRPDI +SSDFIV FPGE+D DF+ TM L+  I +  ++SF +SPR GTP ++   
Sbjct: 292 KLRKVRPDITMSSDFIVAFPGESDQDFQDTMKLIRDIDFDISYSFVFSPRPGTPAADYPC 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439
            + E VK ERL  LQ+++  Q +      +     +L+E   ++   +L GR+   + V 
Sbjct: 352 DIPEEVKKERLYELQQQINTQAMRHARQMLNTEQRILVEGPSRKNIMELRGRTENNRIVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG  + V I DV  ++L GELV
Sbjct: 412 FEGSAELIGQFVDVNIIDVFTNSLRGELV 440


>gi|85705226|ref|ZP_01036325.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Roseovarius sp. 217]
 gi|85670099|gb|EAQ24961.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Roseovarius sp. 217]
          Length = 446

 Score =  479 bits (1234), Expect = e-133,   Method: Composition-based stats.
 Identities = 239/444 (53%), Positives = 319/444 (71%), Gaps = 10/444 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ ++K+YGCQMNVYDS RM +     GY       +AD+I+LNTCHIREKAAEKVYS L
Sbjct: 11  KKLYIKTYGCQMNVYDSERMAEAMGGAGYVETQDPAEADMILLNTCHIREKAAEKVYSEL 70

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR+R  K+    +  DL + V GCVAQAEGEEI+RR P+V++VVGPQ+Y+RLPE+  + R
Sbjct: 71  GRMRQFKD----DKPDLKIGVTGCVAQAEGEEIMRRQPLVDLVVGPQSYHRLPEMEAQVR 126

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G + +DTD+ +EDKF++L          RG TAFLT+QEGCDKFC FCVVPYTRG E+S
Sbjct: 127 AGGKALDTDFPLEDKFDKL---RHRPKAARGPTAFLTVQEGCDKFCAFCVVPYTRGSEVS 183

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R +++V++EAR L++ GV EITLLGQNVNA+ G G  G+    + L+++L++I GL R+R
Sbjct: 184 RPVARVLEEARDLVERGVREITLLGQNVNAYHGAGEGGD-WGLARLIWALNDIDGLERIR 242

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +TTSHP DM D LI AHGD   LMPYLHLPVQSGSD+ILK MNR HTA  Y ++I+RIR+
Sbjct: 243 FTTSHPNDMDDDLIAAHGDCAKLMPYLHLPVQSGSDKILKRMNRSHTAESYLRLIERIRA 302

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
            RPDI IS DFIVGFP ET++DF+AT+DL++ + Y  AFSFKYS R GTP +    QV E
Sbjct: 303 ARPDILISGDFIVGFPEETEEDFQATLDLIEAVTYGYAFSFKYSTRPGTPAAERA-QVAE 361

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
            VK ERL  LQ  +  QQ +  ++ VG+ + VL EK G+  G++VG+S +L +V +   +
Sbjct: 362 AVKTERLHRLQDLIARQQRAAQNSMVGRTVGVLFEKPGRMPGQMVGKSDYLHAVHVTG-D 420

Query: 445 HNIGDIIKVRITDVKISTLYGELV 468
             +GD+ +V I +   ++L G L+
Sbjct: 421 VAVGDLRQVEIIESGPNSLAGRLL 444


>gi|172061651|ref|YP_001809303.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Burkholderia
           ambifaria MC40-6]
 gi|229890455|sp|B1YWB9|MIAB_BURA4 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|171994168|gb|ACB65087.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia ambifaria
           MC40-6]
          Length = 457

 Score =  479 bits (1234), Expect = e-133,   Method: Composition-based stats.
 Identities = 193/456 (42%), Positives = 291/456 (63%), Gaps = 18/456 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++ ++K++GCQMN YDS +M D+   ++G E+ ++ +DAD+I+ NTC +REKA EKV+
Sbjct: 1   MTKKVYIKTFGCQMNEYDSDKMVDVLNAAEGLEKTDTPEDADIILFNTCSVREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S LGR+R LK +       LL+ V GCVA  EG  I+ R+P V++V GPQT +RLP++++
Sbjct: 61  SDLGRVRELKEA----KPGLLIGVGGCVASQEGASIVSRAPYVDLVFGPQTLHRLPQMID 116

Query: 142 RARF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           + R  G+  VD  +   +KF+ L        R  G +AF++I EGC K+C++CVVPYTRG
Sbjct: 117 QRRASGRAQVDISFPEIEKFDHLPPA-----RVEGPSAFVSIMEGCSKYCSYCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG--EKCTFSDLLYSLSEIK 258
            E+SR L  V+ E   L D GV E+TLLGQNVNA+RG    G  E   F+ L+  +++I 
Sbjct: 172 DEVSRPLDDVLTEVAGLADQGVREVTLLGQNVNAYRGALTAGSTEIADFATLIEYVADIP 231

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           G+ R+RYTTSHP++ +  LI  +  +  L+ +LHLPVQ GSDRIL +M R +T  EY+ +
Sbjct: 232 GIERIRYTTSHPKEFTQRLIDTYAKVPKLVSHLHLPVQHGSDRILMAMKRGYTVLEYKSV 291

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           I ++R++RPD+++S+D IVGFPGET++DF   M LV ++ Y  +FSF YSPR GTP +N+
Sbjct: 292 IRKLRAIRPDLSLSTDMIVGFPGETEEDFDKMMALVHEMSYDTSFSFIYSPRPGTPAANL 351

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQS 437
            +     VK +RL  LQ  + E     + + VG++  +L+E    K+  +L GR+   + 
Sbjct: 352 HDDTPREVKLKRLQHLQATIEENVARISRSMVGKVERILVEGPSRKDPNELSGRTENNRV 411

Query: 438 VVLNSK----NHNIGDIIKVRITDVKISTLYGELVV 469
           V   +        IG +I V+I      +L GEL++
Sbjct: 412 VNFPAPLASHPRLIGQMIDVKINHAYPHSLRGELLL 447


>gi|206559304|ref|YP_002230065.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Burkholderia
           cenocepacia J2315]
 gi|229890458|sp|B4EBG2|MIAB_BURCJ RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|198035342|emb|CAR51217.1| putative tRNA thiotransferase protein MiaB [Burkholderia
           cenocepacia J2315]
          Length = 457

 Score =  479 bits (1234), Expect = e-133,   Method: Composition-based stats.
 Identities = 197/456 (43%), Positives = 292/456 (64%), Gaps = 18/456 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++ +VK++GCQMN YDS +M D+   ++G E+ ++ +DAD+I+ NTC +REKA EKV+
Sbjct: 1   MTKKVYVKTFGCQMNEYDSDKMVDVLNAAEGLEKTDTPEDADIILFNTCSVREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S LGR+R LK +       LL+ V GCVA  EG  I+ R+P V++V GPQT +RLP++++
Sbjct: 61  SDLGRVRELKEA----KPGLLIGVGGCVASQEGASIVSRAPYVDLVFGPQTLHRLPQMID 116

Query: 142 RARF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
             R  G+  VD  +   +KF+ L        R  G +AF++I EGC K+C++CVVPYTRG
Sbjct: 117 ARRASGRAQVDITFPEIEKFDHLPPA-----RVEGPSAFVSIMEGCSKYCSYCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG--EKCTFSDLLYSLSEIK 258
            E+SR L  V+ E   L D GV E+TLLGQNVNA+RG    G  E   F+ L+  +++I 
Sbjct: 172 DEVSRPLDDVLTEVAGLADQGVREVTLLGQNVNAYRGALAAGSSEIADFATLIEYVADIP 231

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           G+ R+RYTTSHP++ +  LI  +  +  L+ +LHLPVQ GSDRIL +M R +T  EY+ +
Sbjct: 232 GIERIRYTTSHPKEFTQRLIDTYAKVPKLVNHLHLPVQHGSDRILMAMKRGYTVLEYKSV 291

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           I ++R++RPD+++S+D IVGFPGET+DDF   M LV ++GY  +FSF YSPR GTP +N+
Sbjct: 292 IRKLRAIRPDLSLSTDMIVGFPGETEDDFDKMMALVHEMGYDTSFSFIYSPRPGTPAANL 351

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQS 437
            +    +VK +RL  LQ  + E     + + VG++  +L+E    K+  +L GR+   + 
Sbjct: 352 ADDTPRDVKLKRLQHLQATIEENVARISQSMVGKVERILVEGPSRKDPNELAGRTENNRV 411

Query: 438 VVLNSK----NHNIGDIIKVRITDVKISTLYGELVV 469
           V   +        IG +I V+I      +L GELV+
Sbjct: 412 VNFPAPLASHPRLIGQMIDVKINHAYPHSLRGELVI 447


>gi|119775707|ref|YP_928447.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Shewanella
           amazonensis SB2B]
 gi|119768207|gb|ABM00778.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Shewanella amazonensis
           SB2B]
          Length = 483

 Score =  479 bits (1233), Expect = e-133,   Method: Composition-based stats.
 Identities = 198/452 (43%), Positives = 292/452 (64%), Gaps = 12/452 (2%)

Query: 20  QCIVPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAE 78
           + ++ ++  +K++GCQMN YDS +M D+    QGY      ++AD+++LNTC IREKA E
Sbjct: 7   RKLMSKKLHIKTWGCQMNEYDSSKMADLLGEYQGYTLTEEAEEADILLLNTCSIREKAQE 66

Query: 79  KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPE 138
           KV+  LGR + LK+       DL++ V GCVA  EG+ I  R+  V+++ GPQT +RLPE
Sbjct: 67  KVFHQLGRWKTLKDK----NPDLIIGVGGCVASQEGKAIKDRAQCVDIIFGPQTLHRLPE 122

Query: 139 LLERARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197
           ++++ R G++ V+D  +   +KF+RL        R  G TAF++I EGC K+C+FCVVPY
Sbjct: 123 MIDQVRSGEKAVIDVSFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCSKYCSFCVVPY 177

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257
           TRG E+SR +  ++ E  +L + GV E+ LLGQNVNA+RG   DGE CTF++LL  ++ I
Sbjct: 178 TRGEEVSRPMDDIILEIAQLAEQGVREVNLLGQNVNAYRGAKHDGEICTFAELLRHVAAI 237

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
            G+ RLR+TTSHP + +  +I  + D   L+ +LHLPVQSGSDRIL +M R H A EY+ 
Sbjct: 238 DGIDRLRFTTSHPIEFTQDIIDVYEDTPELVSFLHLPVQSGSDRILTAMKRGHMAIEYKS 297

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
           II R+R  RPDI ISSDFIVGFPGET  DF+ TM L++ + +  +FSF YS R GTP ++
Sbjct: 298 IIRRLRKARPDIQISSDFIVGFPGETAQDFQDTMKLIEDVNFDMSFSFIYSARPGTPAAD 357

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQ 436
           + + VD   K +RL  LQ+ + +Q + ++   +G +  +L+E    K   +L GR+   +
Sbjct: 358 LPDDVDMEEKKQRLADLQELINQQAMRYSRQMMGTVQRILVEGPSVKNPMELRGRTETNR 417

Query: 437 SVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            V     + +IG  + V I DV  ++L G+ +
Sbjct: 418 VVNFEGLHKHIGTFVDVEIVDVFPNSLRGKFI 449


>gi|33592184|ref|NP_879828.1| hypothetical protein BP1041 [Bordetella pertussis Tohama I]
 gi|81578782|sp|Q7VZ86|MIAB_BORPE RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|33571829|emb|CAE41341.1| conserved hypothetical protein [Bordetella pertussis Tohama I]
 gi|332381601|gb|AEE66448.1| hypothetical protein BPTD_1035 [Bordetella pertussis CS]
          Length = 447

 Score =  479 bits (1233), Expect = e-133,   Method: Composition-based stats.
 Identities = 195/444 (43%), Positives = 291/444 (65%), Gaps = 13/444 (2%)

Query: 28  FVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           +++++GCQMN YDS +M D+  + QG E  ++ +DAD+I+ NTC +REKA EKV+S LGR
Sbjct: 2   YIRTFGCQMNEYDSDKMADVLRADQGLELTDNPEDADVILFNTCSVREKAQEKVFSDLGR 61

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR-F 145
           +++LK    K+  +L++ V GCVA  EGE I++R+P V+VV GPQT +RLP+L++R R  
Sbjct: 62  VQHLK----KQNPNLVIGVGGCVASQEGEAIVKRAPYVDVVFGPQTLHRLPDLIKRRRAQ 117

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G   VD  +   +KF+ L        R  G TAF++I EGC K+C+FCVVPYTRG E+SR
Sbjct: 118 GVSQVDISFPEIEKFDALPP-----PRVDGATAFVSIMEGCSKYCSFCVVPYTRGEEVSR 172

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLR 264
               V+ E   L D GV E+TLLGQNVNA+RG   D GE   F+ LL  + EI G+ R+R
Sbjct: 173 PFDDVLLEVADLADQGVKEVTLLGQNVNAYRGAMGDSGEIADFAMLLEYVHEIPGIERIR 232

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           YTTSHP++M+  ++ A+  L  L+ +LHLPVQ+GSDR+L +M R +TA E++ ++ R+R+
Sbjct: 233 YTTSHPKEMTQRMVDAYARLPKLVSFLHLPVQAGSDRVLAAMKRGYTALEFKSVVRRLRA 292

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
            RP + +SSDFIVGFPGET++DF+ TM L++ +G+  +FSF YS R GTP +++ +   +
Sbjct: 293 ARPSLTLSSDFIVGFPGETEEDFQKTMKLIEDVGFDTSFSFVYSRRPGTPAADLHDDTPQ 352

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLNSK 443
           +VK  RL  LQ  + +Q  +     +G    VL+E    ++  +L+GR+   + V     
Sbjct: 353 DVKLRRLQQLQALINQQAAAIAQGMIGTRQRVLVEGPSRRDPNELMGRTENNRIVNFPGV 412

Query: 444 NHNIGDIIKVRITDVKISTLYGEL 467
              IG ++ V +T    ++L G +
Sbjct: 413 PRLIGHMVDVVVTHAHTNSLRGRV 436


>gi|197284347|ref|YP_002150219.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Proteus
           mirabilis HI4320]
 gi|227358509|ref|ZP_03842834.1| 2-methylthioadenine synthase [Proteus mirabilis ATCC 29906]
 gi|229890603|sp|B4EV28|MIAB_PROMH RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|194681834|emb|CAR41118.1| MiaB protein (methylthiolation of isopentenylated A37 derivatives
           in rRNA) [Proteus mirabilis HI4320]
 gi|227161220|gb|EEI46294.1| 2-methylthioadenine synthase [Proteus mirabilis ATCC 29906]
          Length = 476

 Score =  479 bits (1233), Expect = e-133,   Method: Composition-based stats.
 Identities = 196/447 (43%), Positives = 293/447 (65%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ ++K++GCQMN YDS +M D+  S  GY+  +  +DAD+++LNTC IREKA EKV+  
Sbjct: 5   KKLYIKTWGCQMNEYDSSKMADLLESTHGYQLTDVAEDADILLLNTCSIREKAQEKVFHQ 64

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR +N K++      D+++ V GCVA  EGE I +R+  V+++ GPQT +RLPE++ + 
Sbjct: 65  LGRWKNFKDN----KPDIIIGVGGCVASQEGEYIRQRAQCVDIIFGPQTLHRLPEMINQV 120

Query: 144 RFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           +  K  VVD  +   +KF+RL        R  G +AF++I EGC+K+C+FCVVPYTRG E
Sbjct: 121 KGTKSPVVDISFPEIEKFDRLP-----EPRAEGPSAFVSIMEGCNKYCSFCVVPYTRGEE 175

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR    ++ E  +L   GV E+ LLGQNVNA+RG+  DG+ C+F++LL  ++ I G+ R
Sbjct: 176 VSRPCDDILFEIAQLAAQGVREVNLLGQNVNAYRGETFDGQICSFAELLRLVAAIDGIDR 235

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP + +D +I  + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II ++
Sbjct: 236 IRFTTSHPIEFTDDIIAVYEDTPELVSFLHLPVQSGSDRILTLMKRNHTALEYKSIIRKL 295

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R  RPDI ISSDFI+GFPGET DDF  TM L+  + +  +FSF YS R GTP +++ + V
Sbjct: 296 RKARPDILISSDFIIGFPGETQDDFEKTMKLIADVNFDMSFSFIYSARPGTPAADLPDDV 355

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441
            E  K +RL  LQ+++ +Q ++++ A +  +  +L+E   ++   +L GR+   + V   
Sbjct: 356 SEEEKKQRLYLLQQRINQQAMNYSRAMLNSVQRILVEGPSRKNVMELSGRTENNRVVNFE 415

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                IG  + V I DV  ++L G++V
Sbjct: 416 GTPDMIGKFVDVEIVDVYANSLRGKVV 442


>gi|170698977|ref|ZP_02890035.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia ambifaria
           IOP40-10]
 gi|170136084|gb|EDT04354.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia ambifaria
           IOP40-10]
          Length = 457

 Score =  479 bits (1233), Expect = e-133,   Method: Composition-based stats.
 Identities = 194/456 (42%), Positives = 291/456 (63%), Gaps = 18/456 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++ +VK++GCQMN YDS +M D+   ++G E+ ++ +DAD+I+ NTC +REKA EKV+
Sbjct: 1   MTKKVYVKTFGCQMNEYDSDKMVDVLNAAEGLEKTDTPEDADIILFNTCSVREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S LGR+R LK +       LL+ V GCVA  EG  I+ R+P V++V GPQT +RLP++++
Sbjct: 61  SDLGRVRELKEA----KPGLLIGVGGCVASQEGASIVSRAPYVDLVFGPQTLHRLPQMID 116

Query: 142 RARF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           + R  G+  VD  +   +KF+ L        R  G +AF++I EGC K+C++CVVPYTRG
Sbjct: 117 QRRASGRAQVDISFPEIEKFDHLPPA-----RVEGPSAFVSIMEGCSKYCSYCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG--EKCTFSDLLYSLSEIK 258
            E+SR L  V+ E   L D GV E+TLLGQNVNA+RG    G  E   F+ L+  +++I 
Sbjct: 172 DEVSRPLDDVLTEVAGLADQGVREVTLLGQNVNAYRGALTAGSTEIADFATLIEYVADIP 231

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           G+ R+RYTTSHP++ +  LI  +  +  L+ +LHLPVQ GSDRIL +M R +T  EY+ +
Sbjct: 232 GIERIRYTTSHPKEFTQRLIDTYAKVPKLVSHLHLPVQHGSDRILMAMKRGYTVLEYKSV 291

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           I ++R++RPD+++S+D IVGFPGET++DF   M LV ++ Y  +FSF YSPR GTP +N+
Sbjct: 292 IRKLRAIRPDLSLSTDMIVGFPGETEEDFDKMMALVHEMSYDTSFSFIYSPRPGTPAANL 351

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQS 437
            +     VK +RL  LQ  + E     + + VG++  +L+E    K+  +L GR+   + 
Sbjct: 352 HDDTPREVKLKRLQHLQATIEENVARISRSMVGKVERILVEGPSRKDPNELSGRTENNRV 411

Query: 438 VVLNSK----NHNIGDIIKVRITDVKISTLYGELVV 469
           V   +        IG +I V+I      +L GEL++
Sbjct: 412 VNFPAPLASHPRLIGQMIDVKINHAYPHSLRGELLL 447


>gi|83719624|ref|YP_441148.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Burkholderia
           thailandensis E264]
 gi|167617973|ref|ZP_02386604.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia
           thailandensis Bt4]
 gi|257140190|ref|ZP_05588452.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia
           thailandensis E264]
 gi|123537978|sp|Q2T101|MIAB_BURTA RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|83653449|gb|ABC37512.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia
           thailandensis E264]
          Length = 457

 Score =  479 bits (1233), Expect = e-133,   Method: Composition-based stats.
 Identities = 196/456 (42%), Positives = 291/456 (63%), Gaps = 18/456 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++ +VK++GCQMN YDS +M D+   ++G E+ +S +DAD+I+ NTC +REKA EKV+
Sbjct: 1   MTKKVYVKTFGCQMNEYDSDKMVDVLNAAEGLEKTDSPEDADIILFNTCSVREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S LGR+R LK +      DLL+ V GCVA  EG  I+ R+P V++V GPQT +RLP++++
Sbjct: 61  SDLGRVRELKEA----KPDLLIGVGGCVASQEGASIVARAPYVDLVFGPQTLHRLPQMID 116

Query: 142 -RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
            R   G+  VD  +   +KF+ L        R  G +AF++I EGC K+C++CVVPYTRG
Sbjct: 117 ARRESGRAQVDITFPEIEKFDHLPPA-----RVEGPSAFVSIMEGCSKYCSYCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG--EKCTFSDLLYSLSEIK 258
            E+SR L  V+ E   L D GV E+TLLGQNVNA+RG    G  E   F+ L+  +++I 
Sbjct: 172 DEVSRPLDDVLTEIAGLADQGVREVTLLGQNVNAYRGALTAGAHEIADFATLIEYVADIP 231

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           G+ R+RYTTSHP++ +  L+  +  +  L+ +LHLPVQ GSDRIL +M R +T  EY+ +
Sbjct: 232 GIERIRYTTSHPKEFTQRLLDVYAKVPKLVDHLHLPVQHGSDRILMAMKRGYTVLEYKSL 291

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           I ++R++RP++++S+D IVGFPGET+ DF  TM LV ++ Y  +FSF YSPR GTP +N+
Sbjct: 292 IRKLRAIRPNLSLSTDIIVGFPGETEADFDKTMALVHEMSYDTSFSFIYSPRPGTPAANL 351

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQS 437
            +     VK ERL  LQ  + E     + + +G++  +L+E    K+  +L GR+   + 
Sbjct: 352 ADDTPREVKLERLQHLQATIEENVARISQSMLGKVERILVEGPSRKDPNELAGRTENNRV 411

Query: 438 VVLNSK----NHNIGDIIKVRITDVKISTLYGELVV 469
           V   +        IG +I V+I      +L GELV+
Sbjct: 412 VNFPAPLTAHARLIGQMIDVKINHAYPHSLRGELVL 447


>gi|229890664|sp|A1S8S1|MIAB_SHEAM RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
          Length = 474

 Score =  479 bits (1233), Expect = e-133,   Method: Composition-based stats.
 Identities = 198/449 (44%), Positives = 290/449 (64%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++  +K++GCQMN YDS +M D+    QGY      ++AD+++LNTC IREKA EKV+
Sbjct: 1   MSKKLHIKTWGCQMNEYDSSKMADLLGEYQGYTLTEEAEEADILLLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR + LK+       DL++ V GCVA  EG+ I  R+  V+++ GPQT +RLPE+++
Sbjct: 61  HQLGRWKTLKDK----NPDLIIGVGGCVASQEGKAIKDRAQCVDIIFGPQTLHRLPEMID 116

Query: 142 RARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           + R G++ V+D  +   +KF+RL        R  G TAF++I EGC K+C+FCVVPYTRG
Sbjct: 117 QVRSGEKAVIDVSFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCSKYCSFCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR +  ++ E  +L + GV E+ LLGQNVNA+RG   DGE CTF++LL  ++ I G+
Sbjct: 172 EEVSRPMDDIILEIAQLAEQGVREVNLLGQNVNAYRGAKHDGEICTFAELLRHVAAIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            RLR+TTSHP + +  +I  + D   L+ +LHLPVQSGSDRIL +M R H A EY+ II 
Sbjct: 232 DRLRFTTSHPIEFTQDIIDVYEDTPELVSFLHLPVQSGSDRILTAMKRGHMAIEYKSIIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           R+R  RPDI ISSDFIVGFPGET  DF+ TM L++ + +  +FSF YS R GTP +++ +
Sbjct: 292 RLRKARPDIQISSDFIVGFPGETAQDFQDTMKLIEDVNFDMSFSFIYSARPGTPAADLPD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVV 439
            VD   K +RL  LQ+ + +Q + ++   +G +  +L+E    K   +L GR+   + V 
Sbjct: 352 DVDMEEKKQRLADLQELINQQAMRYSRQMMGTVQRILVEGPSVKNPMELRGRTETNRVVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
               + +IG  + V I DV  ++L G+ +
Sbjct: 412 FEGLHKHIGTFVDVEIVDVFPNSLRGKFI 440


>gi|269961561|ref|ZP_06175923.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269833602|gb|EEZ87699.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 474

 Score =  479 bits (1233), Expect = e-133,   Method: Composition-based stats.
 Identities = 198/449 (44%), Positives = 286/449 (63%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++  +K++GCQMN YDS +M D+   + GYE     ++AD+++LNTC IREKA EKV+
Sbjct: 1   MSKKLLIKTWGCQMNEYDSSKMADLLNAANGYELTEEPEEADVLLLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR + LK+ +      +   V    A  EG+ I +R+P V+V+ GPQT +RLPE+++
Sbjct: 61  HQLGRWKTLKDKKPGVVIGVGGCV----ATQEGDHIRQRAPYVDVIFGPQTLHRLPEMIK 116

Query: 142 RARFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           +++  +  V+D  +   +KF+RL        R  G TAF++I EGC K+CT+CVVPYTRG
Sbjct: 117 QSQSDEAPVMDISFPEIEKFDRLP-----EPRAEGATAFVSIMEGCSKYCTYCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR +  V+ E  +L D GV E+ LLGQNVNA+RG   DGE C+F++LL  ++ I G+
Sbjct: 172 EEVSRPMDDVLFEIAQLADQGVREVNLLGQNVNAYRGPMHDGEICSFAELLRLVASIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+TTSHP + +D +I  + D   L+ +LHLPVQSGSDR+L  M R HT  EY+ II 
Sbjct: 232 DRIRFTTSHPLEFTDDIIAVYEDTPELVSFLHLPVQSGSDRVLTMMKRPHTGIEYKSIIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R  RPDI ISSDFIVGFPGETD DF+ TM L+  + +  +FSF +SPR GTP ++   
Sbjct: 292 KLRKARPDIQISSDFIVGFPGETDKDFQDTMKLIKDVDFDMSFSFIFSPRPGTPAADYPC 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439
            + E VK ERL  LQ+ +  Q + ++   +G    VL+E   K+   +L  R+   + V 
Sbjct: 352 DLSEQVKKERLYELQQTVNAQAMRYSRLMLGTEQRVLVEGPSKKNLMELRARTENNRVVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG  + V+ITDV  ++L GELV
Sbjct: 412 FEGSADLIGQFVDVKITDVFANSLRGELV 440


>gi|190573591|ref|YP_001971436.1| (dimethylallyl)adenosine tRNA methylthiotransferase
           [Stenotrophomonas maltophilia K279a]
 gi|229891009|sp|B2FJ92|MIAB_STRMK RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|190011513|emb|CAQ45131.1| conserved hypothetical protein [Stenotrophomonas maltophilia K279a]
          Length = 472

 Score =  479 bits (1233), Expect = e-133,   Method: Composition-based stats.
 Identities = 201/447 (44%), Positives = 289/447 (64%), Gaps = 12/447 (2%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + ++K++GCQMN YDS +M D+  +  G E  ++ +DAD+I++NTC IREKA EKV+S L
Sbjct: 34  KLYIKTHGCQMNEYDSAKMADVLAASDGLELTDTPEDADVILVNTCSIREKAQEKVFSQL 93

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           G  + LKN     G ++++ V GCVA  EGE I++R+P V++V GPQT +RLPEL+   R
Sbjct: 94  GVWKGLKNK----GREVIIGVGGCVASQEGEAIIKRAPFVDLVFGPQTLHRLPELIRARR 149

Query: 145 FGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             KR  VD  +   +KF+RL        R  G +AF++I EGC K+C+FCVVPYTRG E+
Sbjct: 150 EQKRPQVDISFPEIEKFDRLP-----EPRAEGASAFVSIMEGCSKYCSFCVVPYTRGTEV 204

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR    VV E  +L   GV EI LLGQNVNA+RG   DGE      L+ +++EI G+ R+
Sbjct: 205 SRPFEDVVVEVAQLAAQGVREINLLGQNVNAYRGPYGDGEFADLGLLIRTIAEIDGVGRI 264

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+TTSHP + SD LI A  D+  L  +LHLPVQ+GSDR+L +M R +TA E++  I ++R
Sbjct: 265 RFTTSHPLEFSDSLIDAFRDVPQLANFLHLPVQAGSDRVLSAMKRGYTALEFKSKIRKLR 324

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           +VRPDI+ISSDFIVGFPGETD DF  TM L++ IG+  +FSF YS R GTP +++ + + 
Sbjct: 325 AVRPDISISSDFIVGFPGETDADFEKTMKLIEDIGFDHSFSFIYSRRPGTPAADLEDTIS 384

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNS 442
           +  K  RL  LQ+++       ++  VG +  VL+E   ++   +L G++  ++SV   +
Sbjct: 385 DAEKHARLSRLQERINAHAAGISEKMVGTVQTVLVEGPSRKNPNELTGKTENMRSVNFPA 444

Query: 443 KNHNIGDIIKVRITDVKISTLYGELVV 469
               IG  + V IT+   ++L   +V 
Sbjct: 445 PARLIGQFVDVVITEALTNSLRARVVA 471


>gi|115352797|ref|YP_774636.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Burkholderia
           ambifaria AMMD]
 gi|122322269|sp|Q0BC21|MIAB_BURCM RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|115282785|gb|ABI88302.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia ambifaria
           AMMD]
          Length = 457

 Score =  479 bits (1233), Expect = e-133,   Method: Composition-based stats.
 Identities = 194/456 (42%), Positives = 291/456 (63%), Gaps = 18/456 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++ +VK++GCQMN YDS +M D+   ++G E+ ++ +DAD+I+ NTC +REKA EKV+
Sbjct: 1   MTKKVYVKTFGCQMNEYDSDKMVDVLNAAEGLEKTDTPEDADIILFNTCSVREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S LGR+R LK +       LL+ V GCVA  EG  I+ R+P V++V GPQT +RLP++++
Sbjct: 61  SDLGRVRELKEA----KPGLLIGVGGCVASQEGASIVSRAPYVDLVFGPQTLHRLPQMID 116

Query: 142 RARF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           + R  G+  VD  +   +KF+ L        R  G +AF++I EGC K+C++CVVPYTRG
Sbjct: 117 QRRASGRAQVDISFPEIEKFDHLPPA-----RVEGPSAFVSIMEGCSKYCSYCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG--EKCTFSDLLYSLSEIK 258
            E+SR L  V+ E   L D GV E+TLLGQNVNA+RG    G  E   F+ L+  +++I 
Sbjct: 172 DEVSRPLDDVLTEVAGLADQGVREVTLLGQNVNAYRGALTAGSTEIADFATLIEYVADIP 231

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           G+ R+RYTTSHP++ +  LI  +  +  L+ +LHLPVQ GSDRIL +M R +T  EY+ +
Sbjct: 232 GIERIRYTTSHPKEFTQRLIDTYAKVPKLVSHLHLPVQHGSDRILMAMKRGYTVLEYKSV 291

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           I ++R++RPD+++S+D IVGFPGET++DF   M LV ++ Y  +FSF YSPR GTP +N+
Sbjct: 292 IRKLRAIRPDLSLSTDMIVGFPGETEEDFDKMMALVHEMSYDTSFSFIYSPRPGTPAANL 351

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQS 437
            +     VK +RL  LQ  + E     + + VG++  +L+E    K+  +L GR+   + 
Sbjct: 352 HDDTPREVKLKRLQHLQATIEENVARISRSMVGKVERILVEGPSRKDPNELSGRTENNRV 411

Query: 438 VVLNSK----NHNIGDIIKVRITDVKISTLYGELVV 469
           V   +        IG +I V+I      +L GEL++
Sbjct: 412 VNFPAPLASHPRLIGQMIDVKINHAYPHSLRGELLL 447


>gi|332288529|ref|YP_004419381.1| hypothetical protein UMN179_00448 [Gallibacterium anatis UMN179]
 gi|330431425|gb|AEC16484.1| conserved hypothetical protein [Gallibacterium anatis UMN179]
          Length = 462

 Score =  479 bits (1232), Expect = e-133,   Method: Composition-based stats.
 Identities = 204/436 (46%), Positives = 284/436 (65%), Gaps = 12/436 (2%)

Query: 36  MNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSR 94
           MN YDS +M D+  S  G E   + ++AD+++LNTC IREKA EKV+  LGR ++LK   
Sbjct: 1   MNEYDSAKMADLLNSTHGLELTENAEEADILLLNTCSIREKAQEKVFHQLGRWKDLK--- 57

Query: 95  IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR-VVDTD 153
            K+  DL++ V GCVA  EGE I  R+P V+++ GPQT +RLPE++ + R GK  VVD  
Sbjct: 58  -KQNPDLIIGVGGCVASQEGEHIRDRAPYVDIIFGPQTLHRLPEMVNQIRGGKSAVVDVS 116

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           +   +KF+RL        R  G TAF++I EGC+K+C+FCVVPYTRG E+SR +  V+ E
Sbjct: 117 FPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCSFCVVPYTRGEEVSRPVDDVLFE 171

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
             +L + GV E+ LLGQNVNA+RG   DG  C+F++LL  ++ I G+ RLR+TTSHP + 
Sbjct: 172 IAQLAEQGVREVNLLGQNVNAYRGPTHDGGICSFAELLRLVAAIDGIDRLRFTTSHPIEF 231

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
           +D +I  + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II ++R  RPDI ISS
Sbjct: 232 TDDIIDVYRDTPELVSFLHLPVQSGSDRILSMMKRNHTALEYKAIIRKLREARPDIQISS 291

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLC 393
           DFIVGFPGET  DF  TM+L+ ++ +  +FSF YS R GTP ++M + V E  K +RL  
Sbjct: 292 DFIVGFPGETAQDFEQTMNLIAQVNFDMSFSFIYSARPGTPAADMPDDVSEEEKKQRLYL 351

Query: 394 LQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNSKNHNIGDIIK 452
           LQ+++ +Q   F+   +G    +L+E   K+   +L GR+   + V        IG  + 
Sbjct: 352 LQERINQQASQFSRRMLGTEQRILVEGPSKKDIMELTGRTENNRIVNFVGSPDMIGKFVD 411

Query: 453 VRITDVKISTLYGELV 468
           V+ITDV  ++L GE+V
Sbjct: 412 VKITDVYTNSLRGEVV 427


>gi|167585516|ref|ZP_02377904.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia ubonensis
           Bu]
          Length = 457

 Score =  479 bits (1232), Expect = e-133,   Method: Composition-based stats.
 Identities = 196/456 (42%), Positives = 291/456 (63%), Gaps = 18/456 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++ +VK++GCQMN YDS +M D+   ++G E+ ++ +DAD+I+ NTC +REKA EKV+
Sbjct: 1   MTKKVYVKTFGCQMNEYDSDKMVDVLNAAEGLEKTDTPEDADIILFNTCSVREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S LGR+R LK +      DLL+ V GCVA  EG  I+ R+P V++V GPQT +RLP++++
Sbjct: 61  SDLGRVRELKEA----KPDLLIGVGGCVASQEGASIVSRAPYVDLVFGPQTLHRLPQMID 116

Query: 142 RARF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           + R  G+  VD  +   +KF+ L        R  G +AF++I EGC K+C++CVVPYTRG
Sbjct: 117 QRRASGRAQVDITFPEIEKFDHLPPA-----RVEGPSAFVSIMEGCSKYCSYCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG--EKCTFSDLLYSLSEIK 258
            E+SR L  V+ E   L D GV E+TLLGQNVNA+RG    G  E   F+ L+  +++I 
Sbjct: 172 DEVSRPLDDVLTEVAGLADQGVREVTLLGQNVNAYRGALTAGSSEIADFATLIEYVADIP 231

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           G+ R+RYTTSHP++ +  LI  +  +  L+ +LHLPVQ GSDRIL +M R +T  EY+ +
Sbjct: 232 GIERIRYTTSHPKEFTQRLIDMYAKVPKLVNHLHLPVQHGSDRILMAMKRGYTVLEYKSV 291

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           I ++R++RPD+++S+D IVGFPGET+ DF   M LV ++ Y  +FSF YSPR GTP +N+
Sbjct: 292 IRKLRAIRPDLSLSTDLIVGFPGETEADFDKMMALVHEMSYDTSFSFIYSPRPGTPAANL 351

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQS 437
            +     VK +RL  LQ  + E     + + VG++  +L+E    K+  +L GR+   + 
Sbjct: 352 HDDTPREVKLKRLQHLQATIEENVARISQSMVGKVERILVEGPSRKDPNELAGRTENNRV 411

Query: 438 VVLNSK----NHNIGDIIKVRITDVKISTLYGELVV 469
           V   +        IG +I V+I      +L GELV+
Sbjct: 412 VNFPAPLASHPRLIGQMIDVKINHAYPHSLRGELVL 447


>gi|59711366|ref|YP_204142.1| isopentenyl-adenosine A37 tRNA methylthiolase [Vibrio fischeri
           ES114]
 gi|197335117|ref|YP_002155521.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Vibrio fischeri MJ11]
 gi|75354378|sp|Q5E6U2|MIAB_VIBF1 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|229891024|sp|B5FBL3|MIAB_VIBFM RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|59479467|gb|AAW85254.1| isopentenyl-adenosine A37 tRNA methylthiolase [Vibrio fischeri
           ES114]
 gi|197316607|gb|ACH66054.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Vibrio fischeri MJ11]
          Length = 474

 Score =  479 bits (1232), Expect = e-133,   Method: Composition-based stats.
 Identities = 200/449 (44%), Positives = 287/449 (63%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++  +K++GCQMN YDS +M D+   + GYE      +AD+++LNTC IREKA EKV+
Sbjct: 1   MTKKLLIKTWGCQMNEYDSSKMADLLGAANGYELTEEPTEADVLLLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR +NLK+       DL++ V GCVA  EG+ I +R+P V+V+ GPQT +RLPE++ 
Sbjct: 61  HQLGRWKNLKDK----KPDLVIGVGGCVATQEGDHIRQRAPYVDVIFGPQTLHRLPEMIR 116

Query: 142 RARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           +++  ++ V+D  +   +KF+ L        +  G TAF++I EGC K+CT+CVVPYTRG
Sbjct: 117 QSQSNEKPVMDISFPEIEKFDNLP-----EPKAEGATAFVSIMEGCSKYCTYCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR L  V+ E  +L + GV E+ LLGQNVNA+RG   DG+ CTF++LL  ++ I G+
Sbjct: 172 EEVSRPLDDVLFEIAQLAEQGVREVNLLGQNVNAYRGPMHDGDICTFAELLRMVASIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            RLR+TTSHP +  D +I  + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II 
Sbjct: 232 DRLRFTTSHPLEFGDDIIAVYEDTPELVSFLHLPVQSGSDRILTMMKRPHTAIEYKSIIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R  RPDI ISSDFIVGFPGET  DF+ TM L+  + +  +FSF +S R GTP ++   
Sbjct: 292 KLRKARPDIQISSDFIVGFPGETAKDFQDTMKLIKDVDFDMSFSFIFSARPGTPAADYPC 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439
            + E  K +RL  LQ+++  Q + ++   +     VL+E   K+   +L  R+   + V 
Sbjct: 352 DIPEQEKKDRLAELQQQVNSQAMRYSRLMLDTEQRVLVEGPSKKNLMELRARTENNRVVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG  + V+ITDV  ++L GELV
Sbjct: 412 FEGSADLIGQFVDVKITDVFANSLRGELV 440


>gi|325524861|gb|EGD02810.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Burkholderia
           sp. TJI49]
          Length = 457

 Score =  479 bits (1232), Expect = e-133,   Method: Composition-based stats.
 Identities = 195/456 (42%), Positives = 289/456 (63%), Gaps = 18/456 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++ +VK++GCQMN YDS +M D+   ++G E+ ++ +DAD+I+ NTC +REKA EKV+
Sbjct: 1   MTKKVYVKTFGCQMNEYDSDKMVDVLNAAEGLEKTDTPEDADIILFNTCSVREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S LGR+R LK +       LL+ V GCVA  EG  I+ R+P V++V GPQT +RLP++++
Sbjct: 61  SDLGRVRELKEA----KPGLLIGVGGCVASQEGASIVSRAPYVDLVFGPQTLHRLPQMID 116

Query: 142 RARF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
             R  G+  VD  +   +KF+ L        R  G +AF++I EGC K+C++CVVPYTRG
Sbjct: 117 ARRASGRAQVDITFPEIEKFDHLPPA-----RVEGPSAFVSIMEGCSKYCSYCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG--EKCTFSDLLYSLSEIK 258
            E+SR L  V+ E   L D GV E+TLLGQNVNA+RG    G  E   F+ L+  +++I 
Sbjct: 172 DEVSRPLDDVLTEVAGLADQGVREVTLLGQNVNAYRGALTAGSSEIADFATLIEYVADIP 231

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           G+ R+RYTTSHP++ +  LI  +  +  L+ +LHLPVQ GSDRIL +M R +T  EY+ +
Sbjct: 232 GIERIRYTTSHPKEFTQRLIDTYAKVPKLVNHLHLPVQHGSDRILMAMKRGYTVLEYKSV 291

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           I ++R++RPD+++S+D IVGFPGET++DF   M LV  + Y  +FSF YSPR GTP +N+
Sbjct: 292 IRKLRAIRPDLSLSTDMIVGFPGETEEDFDKMMALVHDMSYDTSFSFIYSPRPGTPAANL 351

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQS 437
            +     VK +RL  LQ  + E     + + VG++  +L+E    K+  +L GR+   + 
Sbjct: 352 HDDTPREVKLKRLQHLQATIEENVARISQSMVGKVERILVEGPSRKDPNELAGRTENNRV 411

Query: 438 VVLNSK----NHNIGDIIKVRITDVKISTLYGELVV 469
           V   +        IG +I V+I      +L GELV+
Sbjct: 412 VNFPAPLASHPRLIGQMIDVKINHAYPHSLRGELVL 447


>gi|229890696|sp|Q39D51|MIAB_BURS3 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
          Length = 457

 Score =  479 bits (1232), Expect = e-133,   Method: Composition-based stats.
 Identities = 196/456 (42%), Positives = 291/456 (63%), Gaps = 18/456 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++ +VK++GCQMN YDS +M D+   ++G E+ ++ +DAD+I+ NTC +REKA EKV+
Sbjct: 1   MTKKVYVKTFGCQMNEYDSDKMVDVLNAAEGLEKTDTPEDADIILFNTCSVREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S LGR+R LK +       LL+ V GCVA  EG  I+ R+P V++V GPQT +RLP++++
Sbjct: 61  SDLGRVRELKEA----KPGLLIGVGGCVASQEGASIVSRAPYVDLVFGPQTLHRLPQMID 116

Query: 142 -RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
            R   G+  VD  +   +KF+ L        R  G +AF++I EGC K+C++CVVPYTRG
Sbjct: 117 ARRESGRAQVDISFPEIEKFDHLPPA-----RVEGPSAFVSIMEGCSKYCSYCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG--EKCTFSDLLYSLSEIK 258
            E+SR L  V+ E   L D GV E+TLLGQNVNA+RG    G  E   F+ L+  +++I 
Sbjct: 172 DEVSRPLDDVLTEVAGLADQGVREVTLLGQNVNAYRGALAAGSSEIADFATLIEYVADIP 231

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           G+ R+RYTTSHP++ +  LI  +  +  L+ +LHLPVQ GSDRIL +M R +T  EY+ +
Sbjct: 232 GIERIRYTTSHPKEFTQRLIDTYAKVPKLVNHLHLPVQHGSDRILMAMKRGYTVLEYKSV 291

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           I ++R++RPD+++S+D IVGFPGET+DDF   M LV ++ Y  +FSF YSPR GTP +N+
Sbjct: 292 IRKLRAIRPDLSLSTDMIVGFPGETEDDFDKMMALVHEMSYDTSFSFIYSPRPGTPAANL 351

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQS 437
            +    +VK +RL  LQ  + E     + + VG++  +L+E    K+  +L GR+   + 
Sbjct: 352 HDDTPRDVKLKRLQHLQATIEENVARISQSMVGKVERILVEGPSRKDPNELAGRTENNRV 411

Query: 438 VVLNSK----NHNIGDIIKVRITDVKISTLYGELVV 469
           V   +        IG +I V+I      +L GELV+
Sbjct: 412 VNFPAPLASHPRLIGQMIDVKINHAYPHSLRGELVL 447


>gi|52841564|ref|YP_095363.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Legionella
           pneumophila subsp. pneumophila str. Philadelphia 1]
 gi|54294222|ref|YP_126637.1| hypothetical protein lpl1287 [Legionella pneumophila str. Lens]
 gi|54297243|ref|YP_123612.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Legionella
           pneumophila str. Paris]
 gi|148358866|ref|YP_001250073.1| tRNA thiotransferase [Legionella pneumophila str. Corby]
 gi|296106913|ref|YP_003618613.1| bifunctional enzyme involved in thiolation and methylation of tRNA
           [Legionella pneumophila 2300/99 Alcoy]
 gi|81368736|sp|Q5WX12|MIAB_LEGPL RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|81370679|sp|Q5X5N2|MIAB_LEGPA RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|81377570|sp|Q5ZVV6|MIAB_LEGPH RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|229890555|sp|A5IBH7|MIAB_LEGPC RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|52628675|gb|AAU27416.1| tRNA thiotransferase [Legionella pneumophila subsp. pneumophila
           str. Philadelphia 1]
 gi|53751028|emb|CAH12439.1| hypothetical protein lpp1288 [Legionella pneumophila str. Paris]
 gi|53754054|emb|CAH15527.1| hypothetical protein lpl1287 [Legionella pneumophila str. Lens]
 gi|148280639|gb|ABQ54727.1| tRNA thiotransferase [Legionella pneumophila str. Corby]
 gi|295648814|gb|ADG24661.1| bifunctional enzyme involved in thiolation and methylation of tRNA
           [Legionella pneumophila 2300/99 Alcoy]
          Length = 447

 Score =  479 bits (1232), Expect = e-133,   Method: Composition-based stats.
 Identities = 198/449 (44%), Positives = 285/449 (63%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++ ++K+ GCQMN YDS +M ++   S G  + + ++DAD+I+LNTC IREKA EKV+
Sbjct: 1   MVKKLYIKTNGCQMNEYDSSKMAEVLYASHGLVKTDQVEDADVILLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL- 140
           S LG+ R  K         +L+ V GCVA  EG +I++R+P V++V GPQT +RLP LL 
Sbjct: 61  SQLGQWREYKAK----NPHVLIGVGGCVASQEGSDIIKRAPFVDIVFGPQTLHRLPALLN 116

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           ER    K VVD  +   +KF+ L        R  G TAF++I EGC K+C+FCVVPYTRG
Sbjct: 117 ERLEKNKSVVDISFPEIEKFDHLP-----APRAEGPTAFVSIMEGCSKYCSFCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            EISR    V+ E  +L   GV EI LLGQNVN +RG   +G+    + L++ ++ I G+
Sbjct: 172 EEISRPFDDVLAECYQLASQGVREINLLGQNVNDYRGIMDNGDIADLALLIHYIAAIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+TTSHP   S+ LI A+ ++  L  +LHLPVQSGSDRIL  M R +TA E++  I 
Sbjct: 232 GRIRFTTSHPLAFSENLINAYAEVPELANHLHLPVQSGSDRILSLMKRGYTALEFKSKIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R +RPDI +S+D IVGFPGETD DF+ TMDLV +IG+  +FSF YSPR GTP +N+ +
Sbjct: 292 KLRKIRPDIRLSTDIIVGFPGETDKDFQDTMDLVHEIGFDTSFSFIYSPRPGTPAANLPD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLVGRSPWLQSVV 439
                +K +RL  LQ +L      ++++ +G   ++L+    K+   +L GR+   + V 
Sbjct: 352 DTPMEIKKQRLQILQNRLLMNAARYSESMIGSKQKILVTGFSKKSSQQLSGRTECNRVVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
            +   H IG  I V+I+D   ++L G L+
Sbjct: 412 FDGPPHLIGQFIDVQISDALPNSLRGRLL 440


>gi|171321297|ref|ZP_02910259.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia ambifaria
           MEX-5]
 gi|171093424|gb|EDT38607.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia ambifaria
           MEX-5]
          Length = 457

 Score =  479 bits (1232), Expect = e-133,   Method: Composition-based stats.
 Identities = 194/456 (42%), Positives = 290/456 (63%), Gaps = 18/456 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++ +VK++GCQMN YDS +M D+   ++G E+ ++ +DAD+I+ NTC +REKA EKV+
Sbjct: 1   MTKKVYVKTFGCQMNEYDSDKMVDVLNAAEGLEKTDTPEDADIILFNTCSVREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S LGR+R LK +       LL+ V GCVA  EG  I+ R+P V++V GPQT +RLP++++
Sbjct: 61  SDLGRVRELKEA----KPGLLIGVGGCVASQEGASIVSRAPYVDLVFGPQTLHRLPQMID 116

Query: 142 RARF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           + R  G+  VD  +   +KF+ L        R  G +AF++I EGC K+C++CVVPYTRG
Sbjct: 117 QRRASGRAQVDISFPEIEKFDHLPPA-----RVEGPSAFVSIMEGCSKYCSYCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG--EKCTFSDLLYSLSEIK 258
            E+SR L  V+ E   L D GV E+TLLGQNVNA+RG    G  E   F+ L+  +++I 
Sbjct: 172 DEVSRPLDDVLTEVAGLADQGVREVTLLGQNVNAYRGALTAGSTEIADFATLIEYVADIP 231

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           G+ R+RYTTSHP++ +  LI  +  +  L+ +LHLPVQ GSDRIL +M R +T  EY+ +
Sbjct: 232 GIERIRYTTSHPKEFTQRLIDTYAKVPKLVSHLHLPVQHGSDRILMAMKRGYTVLEYKSV 291

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           I ++R++RPD+++S+D IVGFPGET+ DF   M LV ++ Y  +FSF YSPR GTP +N+
Sbjct: 292 IRKLRAIRPDLSLSTDMIVGFPGETEADFDKMMALVHEMSYDTSFSFIYSPRPGTPAANL 351

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQS 437
            +     VK +RL  LQ  + E     + + VG++  +L+E    K+  +L GR+   + 
Sbjct: 352 HDDTPREVKLKRLQHLQATIEENVARISQSMVGKVERILVEGPSRKDPNELSGRTENNRV 411

Query: 438 VVLNSK----NHNIGDIIKVRITDVKISTLYGELVV 469
           V   +        IG +I V+I      +L GEL++
Sbjct: 412 VNFPAPLASHPRLIGQMIDVKINHAYPHSLRGELLL 447


>gi|83648010|ref|YP_436445.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Hahella
           chejuensis KCTC 2396]
 gi|123531267|sp|Q2SBF4|MIAB_HAHCH RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|83636053|gb|ABC32020.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Hahella chejuensis KCTC
           2396]
          Length = 446

 Score =  479 bits (1232), Expect = e-133,   Method: Composition-based stats.
 Identities = 202/450 (44%), Positives = 284/450 (63%), Gaps = 13/450 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + Q+ F+K+YGCQMN YDS RM D+   S   E  ++ D+AD+++LNTC IREKA EKV+
Sbjct: 1   MAQKLFIKTYGCQMNEYDSSRMADLLGESHSVELTDNPDEADILLLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR + LK        +LL+ V GCVA  EG+ I  R+P V++V GPQT +RLPE++ 
Sbjct: 61  HQLGRWKTLKEK----NPNLLIGVGGCVASQEGDAIRDRAPYVDMVFGPQTLHRLPEMVN 116

Query: 142 RARFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
                K  +VD  +   +KF+RL +         G +AF++I EGC K+CTFCVVPYTRG
Sbjct: 117 SVAHQKIPMVDVTFPEIEKFDRLPMPSS-----EGASAFVSIMEGCSKYCTFCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR +  V+ E   L   GV E+ LLGQNVNA+RG   DG+    ++L+  ++ + G+
Sbjct: 172 EEVSRPVDDVIAEIAHLAGQGVREVNLLGQNVNAYRGLTHDGDYMDLAELITYVASVDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+RYTTSHP + SD LI  +  +  L+ +LHLPVQSGSDRIL  M R HT  EY   + 
Sbjct: 232 DRIRYTTSHPVEFSDSLIDVYASVPKLVSHLHLPVQSGSDRILNLMKRGHTVAEYTDKLR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           R++ +RPDI++SSDFIVGFPGETD DF  TM+L+++IG+  +FSF YS R GTP +N+ +
Sbjct: 292 RLQEIRPDISLSSDFIVGFPGETDADFEETMNLINEIGFDHSFSFVYSARPGTPAANLED 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVV 439
            V E  K +RL  LQ+++ +     +   VG    +L+     K+ G+L GR+   + V 
Sbjct: 352 NVSEEAKKQRLAILQQRILQFAQDISRKMVGSTQRILVTGVSKKDPGELQGRTENNRVVN 411

Query: 440 LNSKNHN-IGDIIKVRITDVKISTLYGELV 468
             S +H+ IG  + V IT    ++L GE V
Sbjct: 412 FRSDSHDIIGRFVDVTITAALPNSLRGERV 441


>gi|262394980|ref|YP_003286834.1| tRNA-i(6)A37 methylthiotransferase [Vibrio sp. Ex25]
 gi|262338574|gb|ACY52369.1| tRNA-i(6)A37 methylthiotransferase [Vibrio sp. Ex25]
          Length = 474

 Score =  479 bits (1232), Expect = e-133,   Method: Composition-based stats.
 Identities = 199/449 (44%), Positives = 284/449 (63%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++  +K++GCQMN YDS +M D+   + GYE     ++AD+++LNTC IREKA EKV+
Sbjct: 1   MSKKLLIKTWGCQMNEYDSSKMADLLNAANGYELTEEPEEADVLLLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR + LK+ +      +   V    A  EG+ I  R+P V+V+ GPQT +RLPE+++
Sbjct: 61  HQLGRWKTLKDKKPGVVIGVGGCV----ATQEGDHIRERAPYVDVIFGPQTLHRLPEMIK 116

Query: 142 RARFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           +++     V+D  +   +KF+RL        R  G TAF++I EGC K+CT+CVVPYTRG
Sbjct: 117 QSQSDDAPVMDISFPEIEKFDRLP-----EPRAEGATAFVSIMEGCSKYCTYCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR +  V+ E  +L + GV E+ LLGQNVNA+RG   DGE C+F++LL  ++ I G+
Sbjct: 172 EEVSRPMDDVLFEIAQLAEQGVREVNLLGQNVNAYRGPTHDGEICSFAELLRLVASIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+TTSHP + +D +I  + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II 
Sbjct: 232 DRIRFTTSHPLEFTDDIIAVYEDTPELVSFLHLPVQSGSDRILTMMKRPHTAIEYKSIIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R  RPDI ISSDFIVGFPGETD DF+ TM L+  + +  +FSF +SPR GTP ++   
Sbjct: 292 KLRKARPDIQISSDFIVGFPGETDKDFQDTMKLIKDVDFDMSFSFIFSPRPGTPAADYPC 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439
            V E VK ERL  LQ+ +  Q + ++   +G    VL+E   K+   +L  R+   + V 
Sbjct: 352 DVSEQVKKERLYELQQTINAQAMRYSRLMLGTEQRVLVEGPSKKNLMELRARTENNRVVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG  + V+I DV  ++L GELV
Sbjct: 412 FEGSADLIGQFVDVKIVDVFANSLRGELV 440


>gi|163747528|ref|ZP_02154878.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Oceanibulbus indolifex
           HEL-45]
 gi|161379206|gb|EDQ03625.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Oceanibulbus indolifex
           HEL-45]
          Length = 434

 Score =  478 bits (1231), Expect = e-133,   Method: Composition-based stats.
 Identities = 237/440 (53%), Positives = 311/440 (70%), Gaps = 14/440 (3%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P++ F+K+YGCQMNVYDS RM +    QGY   +  DDAD+I+LNTCHIREKAAEKVYS 
Sbjct: 4   PKKLFIKTYGCQMNVYDSERMAESLGGQGYVTTDKADDADMILLNTCHIREKAAEKVYSE 63

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR++ LK++R     DL + VAGCVAQAEG EI+RR P V++VVGPQ+Y+RLPE+  + 
Sbjct: 64  LGRLKPLKDAR----PDLKIGVAGCVAQAEGAEIMRRQPAVDLVVGPQSYHRLPEMEAKV 119

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           R G+  +DTD+  EDKF+ L         KR   AFLT+QEGCDKFC FCVVPYTRG E+
Sbjct: 120 RSGQSALDTDFPAEDKFDHLKSRP---KAKRAPAAFLTVQEGCDKFCAFCVVPYTRGAEV 176

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR   +V++EAR L++ GV E+TLLGQNVNA+ G        T +DL+ +L+++ GL R+
Sbjct: 177 SRPAEKVLEEARDLVERGVREVTLLGQNVNAYHGGM------TLADLIRALAKVDGLERI 230

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           RYTTSHP DM D LI AHG++  LMPYLHLPVQSGSD ILK MNR HTA  Y ++++RIR
Sbjct: 231 RYTTSHPNDMGDDLIAAHGEVPELMPYLHLPVQSGSDHILKRMNRSHTAESYLKLLERIR 290

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
             RPDI +S DFIVGFP E+D DF ATM+LV ++ Y  A+SFKYS R GTP +     VD
Sbjct: 291 EARPDILLSGDFIVGFPEESDADFEATMELVRQVRYGYAYSFKYSTRPGTPAAERP-LVD 349

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
             V  +RL  LQ  + + Q     + VG+ + VL+EK G+  G+++G+S +L +V + + 
Sbjct: 350 PAVADDRLQRLQGLITQHQREIQQSMVGREVSVLVEKQGRLPGQMLGKSEYLHAVHIENC 409

Query: 444 NHNIGDIIKVRITDVKISTL 463
              IGDI +VR+T+ K ++L
Sbjct: 410 TAAIGDIQRVRVTEAKTNSL 429


>gi|91228826|ref|ZP_01262733.1| hypothetical protein V12G01_00185 [Vibrio alginolyticus 12G01]
 gi|269965463|ref|ZP_06179582.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
 gi|91187631|gb|EAS73956.1| hypothetical protein V12G01_00185 [Vibrio alginolyticus 12G01]
 gi|269829942|gb|EEZ84172.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
          Length = 474

 Score =  478 bits (1231), Expect = e-133,   Method: Composition-based stats.
 Identities = 199/449 (44%), Positives = 284/449 (63%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++  +K++GCQMN YDS +M D+   + GYE     ++AD+++LNTC IREKA EKV+
Sbjct: 1   MSKKLLIKTWGCQMNEYDSSKMADLLNAANGYELTEEPEEADVLLLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR + LK+ +      +   V    A  EG+ I  R+P V+V+ GPQT +RLPE+++
Sbjct: 61  HQLGRWKTLKDKKPGVVIGVGGCV----ATQEGDHIRERAPYVDVIFGPQTLHRLPEMIK 116

Query: 142 RARFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           +++     V+D  +   +KF+RL        R  G TAF++I EGC K+CT+CVVPYTRG
Sbjct: 117 QSQSDDAPVMDISFPEIEKFDRLP-----EPRAEGATAFVSIMEGCSKYCTYCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR +  V+ E  +L + GV E+ LLGQNVNA+RG   DGE C+F++LL  ++ I G+
Sbjct: 172 EEVSRPMDDVLFEIAQLAEQGVREVNLLGQNVNAYRGPMHDGEICSFAELLRLVASIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+TTSHP + +D +I  + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II 
Sbjct: 232 DRIRFTTSHPLEFTDDIIAVYEDTPELVSFLHLPVQSGSDRILTMMKRPHTAIEYKSIIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R  RPDI ISSDFIVGFPGETD DF+ TM L+  + +  +FSF +SPR GTP ++   
Sbjct: 292 KLRKARPDIQISSDFIVGFPGETDKDFQDTMKLIKDVDFDMSFSFIFSPRPGTPAADYPC 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439
            V E VK ERL  LQ+ +  Q + ++   +G    VL+E   K+   +L  R+   + V 
Sbjct: 352 DVSEQVKKERLYELQQTINAQAMRYSRLMLGTEQRVLVEGPSKKNLMELRARTENNRVVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG  + V+I DV  ++L GELV
Sbjct: 412 FEGSADLIGQFVDVKIVDVFANSLRGELV 440


>gi|192288883|ref|YP_001989488.1| (dimethylallyl)adenosine tRNA methylthiotransferase
           [Rhodopseudomonas palustris TIE-1]
 gi|229890627|sp|B3QAC6|MIAB_RHOPT RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|192282632|gb|ACE99012.1| RNA modification enzyme, MiaB family [Rhodopseudomonas palustris
           TIE-1]
          Length = 463

 Score =  478 bits (1231), Expect = e-133,   Method: Composition-based stats.
 Identities = 240/444 (54%), Positives = 328/444 (73%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P++  +KSYGCQMNVYD+ RM D    +G+    ++DDADL++LNTCHIREKA+EKVYS 
Sbjct: 4   PRKLHIKSYGCQMNVYDAQRMVDALAPEGFVETANVDDADLVILNTCHIREKASEKVYSE 63

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR+R  ++     G  + + VAGCVAQAEGEEI+RR+P+V+VVVGPQ+Y+ LP+LL +A
Sbjct: 64  LGRLRVARDEAANHGRRMQIAVAGCVAQAEGEEIIRRAPVVDVVVGPQSYHNLPQLLAKA 123

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
               R ++T++ +EDKF  L        R RG++AF+T+QEGCDKFCTFCVVPYTRG E+
Sbjct: 124 EQHGRALETEFPIEDKFGVLPQPAPDAIRARGISAFVTVQEGCDKFCTFCVVPYTRGAEM 183

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR +  +V++ ++L +NGV E+TL+GQNVNA+ G G DG   +   L+  L+EI G+VRL
Sbjct: 184 SRPVVAIVEDVKRLAENGVREVTLIGQNVNAYHGDGPDGRAWSLGRLVRRLAEIPGIVRL 243

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           RY+TSHP D+ D L+ AH DL  LMP++HLPVQSGSDRIL +MNR+HTA +YR++IDR R
Sbjct: 244 RYSTSHPNDVDDDLLAAHRDLPALMPFVHLPVQSGSDRILAAMNRKHTADDYRRVIDRFR 303

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           S    IA SSDFIVGFPGET+ DF AT+ LV +IGYA A+SFKYSPR GTP ++M+E V 
Sbjct: 304 SASETIAFSSDFIVGFPGETERDFSATLALVAQIGYAGAYSFKYSPRPGTPAADMVEMVP 363

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
             V  ERL  LQ+ + +QQ +FN A +G+ +EVL E+ G++ G++VGR+ +LQ   + + 
Sbjct: 364 AAVMDERLEQLQQLIDQQQSAFNKAAIGRTVEVLFERAGRKPGQIVGRTAYLQPAHVMAP 423

Query: 444 NHNIGDIIKVRITDVKISTLYGEL 467
           +  IG ++ VR+  ++  +L GEL
Sbjct: 424 DSIIGKVLPVRVDSLERYSLLGEL 447


>gi|167579900|ref|ZP_02372774.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia
           thailandensis TXDOH]
          Length = 457

 Score =  478 bits (1231), Expect = e-133,   Method: Composition-based stats.
 Identities = 195/456 (42%), Positives = 291/456 (63%), Gaps = 18/456 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++ +VK++GCQMN YDS +M D+   ++G E+ ++ +DAD+I+ NTC +REKA EKV+
Sbjct: 1   MTKKVYVKTFGCQMNEYDSDKMVDVLNAAEGLEKTDTPEDADIILFNTCSVREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S LGR+R LK +      DLL+ V GCVA  EG  I+ R+P V++V GPQT +RLP++++
Sbjct: 61  SDLGRVRELKEA----KPDLLIGVGGCVASQEGASIVARAPYVDLVFGPQTLHRLPQMID 116

Query: 142 -RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
            R   G+  VD  +   +KF+ L        R  G +AF++I EGC K+C++CVVPYTRG
Sbjct: 117 ARRESGRAQVDITFPEIEKFDHLPPA-----RVEGPSAFVSIMEGCSKYCSYCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG--EKCTFSDLLYSLSEIK 258
            E+SR L  V+ E   L D GV E+TLLGQNVNA+RG    G  E   F+ L+  +++I 
Sbjct: 172 DEVSRPLDDVLTEIAGLADQGVREVTLLGQNVNAYRGALTAGAHEIADFATLIEYVADIP 231

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           G+ R+RYTTSHP++ +  L+  +  +  L+ +LHLPVQ GSDRIL +M R +T  EY+ +
Sbjct: 232 GIERIRYTTSHPKEFTQRLLDVYAKVPKLVDHLHLPVQHGSDRILMAMKRGYTVLEYKSL 291

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           I ++R++RP++++S+D IVGFPGET+ DF  TM LV ++ Y  +FSF YSPR GTP +N+
Sbjct: 292 IRKLRAIRPNLSLSTDIIVGFPGETEADFDKTMALVHEMSYDTSFSFIYSPRPGTPAANL 351

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQS 437
            +     VK ERL  LQ  + E     + + +G++  +L+E    K+  +L GR+   + 
Sbjct: 352 ADDTPREVKLERLQHLQATIEENVARISQSMLGKVERILVEGPSRKDPNELAGRTENNRV 411

Query: 438 VVLNSK----NHNIGDIIKVRITDVKISTLYGELVV 469
           V   +        IG +I V+I      +L GELV+
Sbjct: 412 VNFPAPLAAHARLIGQMIDVKINHAYPHSLRGELVL 447


>gi|262172028|ref|ZP_06039706.1| tRNA-i(6)A37 methylthiotransferase [Vibrio mimicus MB-451]
 gi|262402694|ref|ZP_06079255.1| tRNA-i(6)A37 methylthiotransferase [Vibrio sp. RC586]
 gi|261893104|gb|EEY39090.1| tRNA-i(6)A37 methylthiotransferase [Vibrio mimicus MB-451]
 gi|262351476|gb|EEZ00609.1| tRNA-i(6)A37 methylthiotransferase [Vibrio sp. RC586]
          Length = 474

 Score =  478 bits (1231), Expect = e-133,   Method: Composition-based stats.
 Identities = 198/449 (44%), Positives = 287/449 (63%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++  +K++GCQMN YDS +M D+   + GYE     ++AD+++LNTC IREKA EKV+
Sbjct: 1   MSKKLLIKTWGCQMNEYDSSKMADLLNAANGYELTEIPEEADVLLLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR + LK+ +      +   V    A  EG+ I  R+P V+V+ GPQT +RLPE+++
Sbjct: 61  HQLGRWKTLKDKKPGVVIGVGGCV----ATQEGDSIRDRAPYVDVIFGPQTLHRLPEMIK 116

Query: 142 RARFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           +++  +  V+D  +   +KF+RL        R  G TAF++I EGC K+CT+CVVPYTRG
Sbjct: 117 QSQISEAPVMDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCSKYCTYCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR +  V+ E  +L + GV E+ LLGQNVNA+RG   DGE C+F++LL  ++ I G+
Sbjct: 172 EEVSRPMDDVLFEIAQLAEQGVREVNLLGQNVNAYRGATHDGEICSFAELLRLVATIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+TTSHP + +D +I  + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II 
Sbjct: 232 DRIRFTTSHPLEFTDDIIAVYEDTPELVSFLHLPVQSGSDRILTMMKRPHTAIEYKSIIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R  RPDI ISSDFIVGFPGETD DF+ TM L+  + +  +FSF +SPR GTP ++   
Sbjct: 292 KLRKARPDIQISSDFIVGFPGETDKDFQDTMKLIRDVDFDMSFSFIFSPRPGTPAADYPC 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439
            + E VK ERL  LQ+++  Q + ++   +G    +L+E   K+   +L GR+   + V 
Sbjct: 352 DLSEEVKKERLYELQQQINSQAMRYSRLMLGTEQRILVEGPSKKDLMELRGRTENNRVVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG  + V+I DV  ++L GELV
Sbjct: 412 FEGSPELIGQFVDVKIVDVFANSLRGELV 440


>gi|322833884|ref|YP_004213911.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Rahnella sp. Y9602]
 gi|321169085|gb|ADW74784.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Rahnella sp. Y9602]
          Length = 474

 Score =  478 bits (1231), Expect = e-133,   Method: Composition-based stats.
 Identities = 198/449 (44%), Positives = 294/449 (65%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++  +K++GCQMN YDS +M D+  S  GY+  ++ ++AD+++LNTC IREKA EKV+
Sbjct: 1   MTKKLHIKTWGCQMNEYDSSKMADLLDSTHGYQLTDNAEEADILLLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S LG  + LK    K+  ++++ V GCVA  EGE + +R+P V++V GPQT +RLPE++ 
Sbjct: 61  SLLGHWKLLK----KKNPNIIIGVGGCVASQEGEMLRKRAPCVDIVFGPQTLHRLPEMVN 116

Query: 142 RARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
             R  K  VVD  +   +KF+RL        R  G TAF++I EGC+K+C+FCVVPYTRG
Sbjct: 117 HVRGTKSPVVDISFPEIEKFDRLP-----EPRADGPTAFVSIMEGCNKYCSFCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR    V+ E  +L   GV E+ LLGQNVNA+RG   +G  CTF++LL  ++ I G+
Sbjct: 172 EEVSRPCDDVLFEVAQLAAQGVREVNLLGQNVNAYRGDAFEGGVCTFAELLRLVAAIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+TTSHP + +D +I+ + D   ++ +LHLP+QSGSDRIL  M R HT  EY+  I 
Sbjct: 232 DRIRFTTSHPVEFTDDIIEVYKDTPEVVSFLHLPIQSGSDRILTMMKRPHTVLEYKSTIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R+ RPDI  SSDFI+GFPGET++DF  TMDL+ ++ Y  +FSF YSPR GTP ++M++
Sbjct: 292 KLRAARPDIHFSSDFIIGFPGETNEDFERTMDLIAQVNYDVSFSFIYSPRPGTPAADMVD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439
            V  + K +RL  LQ ++ +Q + F+ A +G +  +L+E   ++   +L GR+   + V 
Sbjct: 352 DVSMDEKKQRLALLQDRITQQVMRFSRATLGTVQRILVEGTSRKDIMELTGRTECNRVVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG  + V I DV  ++L G +V
Sbjct: 412 FEGTPDMIGKFVDVEIVDVYANSLRGVVV 440


>gi|134093658|ref|YP_001098733.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Herminiimonas
           arsenicoxydans]
 gi|229890608|sp|A4G267|MIAB_HERAR RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|133737561|emb|CAL60604.1| putative tRNA-i(6)A37 thiotransferase enzyme MiaB [Herminiimonas
           arsenicoxydans]
          Length = 446

 Score =  478 bits (1231), Expect = e-133,   Method: Composition-based stats.
 Identities = 203/453 (44%), Positives = 296/453 (65%), Gaps = 15/453 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++ ++K++GCQMN YDS +M D+   S G  + +  +DAD+I+LNTC +REKA EKV+
Sbjct: 1   MQKKIYIKTFGCQMNEYDSDKMADVLNASDGLIKTDKAEDADVILLNTCSVREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S LGR+R LK        DL++ V GCVA  EG+ I++R+P V++V GPQT +RLPE+L+
Sbjct: 61  SDLGRLRELKL----LKPDLMIGVGGCVASQEGDAIIKRAPYVDLVFGPQTLHRLPEMLK 116

Query: 142 RARF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           + R  G+  VD  +   +KF+ +        +  G TAF++I EGC K+C++CVVPYTRG
Sbjct: 117 QRRSTGRSQVDISFPEIEKFDHMPPA-----KVEGATAFVSIMEGCSKYCSYCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR    V+ E   L   GV EITLLGQNVNA+RG+  DGE   F+ L+  ++E++G+
Sbjct: 172 EEVSRRFDDVLTEVAGLEAQGVKEITLLGQNVNAYRGEMADGEIADFALLIEYIAEMEGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+RY TSHP++ +  LI  +  +  L+ +L+LP Q GSDRIL +M R +T+ EY+ I+ 
Sbjct: 232 ERIRYVTSHPKEFTQRLIDTYAKVPKLVDHLYLPAQHGSDRILAAMKRGYTSLEYKSILR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           R+R+VRP+I+ISSDFIVGFPGETD+DF A M L+D IGY  +FSF +SPR GTP +N+ +
Sbjct: 292 RLRAVRPNISISSDFIVGFPGETDEDFEAMMKLIDDIGYDNSFSFIFSPRPGTPAANLAD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439
                VK +RL  LQ  + +    ++D  VG +  +L+E   K+   +L GR+   + V 
Sbjct: 352 DTPHEVKLKRLQRLQAVIDQNTRRYSDEMVGSVQRILVEGPSKKDADELQGRTENNRVVN 411

Query: 440 LNSKN---HNIGDIIKVRITDVKISTLYGELVV 469
            ++     H IG ++ V IT     TL GE+VV
Sbjct: 412 FSAGPNAAHLIGQMVNVNITQSHAYTLRGEIVV 444


>gi|121533678|ref|ZP_01665505.1| RNA modification enzyme, MiaB family [Thermosinus carboxydivorans
           Nor1]
 gi|121307669|gb|EAX48584.1| RNA modification enzyme, MiaB family [Thermosinus carboxydivorans
           Nor1]
          Length = 451

 Score =  478 bits (1230), Expect = e-133,   Method: Composition-based stats.
 Identities = 173/444 (38%), Positives = 271/444 (61%), Gaps = 11/444 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +++ + +YGCQMN  DS R+       GY   + ++ ADLI++NTC +RE A +K+Y  +
Sbjct: 16  RKYHIITYGCQMNENDSERLAGQLRGLGYSSTDQIEQADLILINTCCVRESAEKKIYGKI 75

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           G ++ LK        +LL+ V GC++Q + ++I  ++P V++V+G    ++L +L++   
Sbjct: 76  GELKRLKT----VNPNLLIGVTGCLSQKDRDKIFTKAPHVDLVMGTHNVHQLTDLIKEIS 131

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
             +   D   +V D+ ERL+  D    RK  V+A++ I  GC+ FCT+C+VPY RG E S
Sbjct: 132 QSR---DRVLAVWDQAERLAP-DVPTVRKSQVSAWVPIMYGCNNFCTYCIVPYVRGRERS 187

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R L+ ++ E R+L   G  EITLLGQNVN+  GK  + E   F+DLL ++ +++ + R+R
Sbjct: 188 RPLADILAEVRQLGTEGFKEITLLGQNVNS-YGKDGE-ETIDFADLLAAVDKVETIARIR 245

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           Y TSHPRDM+  +I        +  + HLPVQSGSD +L+ MNR +T   YR+++++IRS
Sbjct: 246 YMTSHPRDMNAKVIAVIKHGQRICEHFHLPVQSGSDIVLQRMNRGYTTEYYRKLVEKIRS 305

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             P  +I++D IVGFPGETD+ F  T+D V  I +  A++F YSPR GTP + M +QV  
Sbjct: 306 EIPHASITTDIIVGFPGETDELFMQTLDFVRSIRFDAAYTFLYSPRSGTPAATMPDQVPL 365

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVLNSK 443
            +K +RL  L     E  ++ N+A +GQ +EVL+E   K +  K++GR+   + V+ N  
Sbjct: 366 AIKKQRLQQLMAVQNEISLAINEALIGQTVEVLVEGPSKNDPDKMMGRTRTNKIVLWNRG 425

Query: 444 NHNIGDIIKVRITDVKISTLYGEL 467
              IG +I VR+   +   L GE+
Sbjct: 426 KEQIGQLISVRVLKAQTWLLKGEV 449


>gi|319943047|ref|ZP_08017330.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Lautropia mirabilis ATCC
           51599]
 gi|319743589|gb|EFV95993.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Lautropia mirabilis ATCC
           51599]
          Length = 473

 Score =  478 bits (1230), Expect = e-133,   Method: Composition-based stats.
 Identities = 203/452 (44%), Positives = 282/452 (62%), Gaps = 15/452 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++ +++++GCQMN YDS RM D+    +G E  +  ++AD+++ NTC IREKA EKV+
Sbjct: 1   MSRKLYLRTFGCQMNSYDSERMADLLAETEGAELTDDPNEADIVLFNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S LG  R +K +R     +L++ V GCVA  EGE I+ R+P V+VV GPQT +RLPEL++
Sbjct: 61  SDLGYFRAMKAAR----PELIIGVGGCVASQEGEAIVSRAPFVDVVFGPQTLHRLPELID 116

Query: 142 RARF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           R R  G   VD  +   +KF+ L        RK G +AF++I EGC K+C+FCVVPYTRG
Sbjct: 117 RRRQTGHSQVDIRFPEIEKFDALPP-----PRKVGASAFVSIMEGCSKYCSFCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG--KGLDGEKCTFSDLLYSLSEIK 258
            EISR    V+ +   L + GV E+TLLGQNVNA+ G  +G D     F+ LL  + +I 
Sbjct: 172 EEISRPFEDVLSDVITLAEQGVKEVTLLGQNVNAYLGQVEGFD-APADFATLLDYIHDIP 230

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           G+ R+RYTTSHPR+ ++ LI AH  L  L P +HLPVQSGSDRIL +M R +TA EYR I
Sbjct: 231 GIERIRYTTSHPREFTERLIDAHAQLPKLAPLVHLPVQSGSDRILAAMKRGYTALEYRSI 290

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           + R+R+  P I +++DFIVGFPGET+ DF  T+ L + + Y  A+SF YSPR GTP +N+
Sbjct: 291 VRRLRAASPGIGLTTDFIVGFPGETEADFLKTLKLAEDLAYDDAYSFIYSPRPGTPAANL 350

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQS 437
            ++     K ERL  LQ  +++  ++     VG    VL+E   ++   +L GR P  + 
Sbjct: 351 QDETPHEEKVERLQRLQAVVQQSSLAIARGMVGSRQRVLVEGPSRKDASELSGRCPNNRM 410

Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
           V        IG +I V IT     TL GE V 
Sbjct: 411 VNFPGAPELIGQLIDVDITSAMSHTLRGEPVA 442


>gi|299067908|emb|CBJ39122.1| isopentenyl-adenosine A37 tRNA methylthiolase, Fe-S protein
           [Ralstonia solanacearum CMR15]
          Length = 452

 Score =  478 bits (1230), Expect = e-132,   Method: Composition-based stats.
 Identities = 204/456 (44%), Positives = 290/456 (63%), Gaps = 20/456 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ F+K++GCQMN YDS +M D+   ++G    ++ +DAD+I+ NTC +REKA EKV+S 
Sbjct: 2   KKVFIKTFGCQMNEYDSDKMADVLNAAEGLVPTDTPEDADVILFNTCSVREKAQEKVFSD 61

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE-R 142
           LGR++ LK        DL+V V GCVA  EG  I+ R+P V+VV GPQT +RLPEL++ R
Sbjct: 62  LGRVKALKAR----NPDLVVGVGGCVASQEGASIVARAPYVDVVFGPQTLHRLPELIDAR 117

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            R G+  VD  +   +KF+ L        R  G +AF++I EGC K+C++CVVPYTRG E
Sbjct: 118 RRTGRPQVDVSFPEIEKFDHLPPA-----RVEGPSAFVSIMEGCSKYCSYCVVPYTRGEE 172

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG-EKCTFSDLLYSLSEIKGLV 261
           +SR    V+ E   L + GV E+TLLGQNVNA+ GK  D  E+  F+ LL  ++EI G+ 
Sbjct: 173 VSRPFEDVLAEVAGLAEQGVREVTLLGQNVNAYIGKMGDTSERADFALLLEYVAEIPGIE 232

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+RYTTSHP++ +  LI+A+     L+ +LHLPVQ GSDRIL +M R +T  EY+ II +
Sbjct: 233 RIRYTTSHPKEFTARLIEAYATNRKLVDHLHLPVQHGSDRILMAMKRGYTVLEYKSIIRK 292

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R++RPD+++++DFIVGFPGETD DF  TMDLV +IGY  +FSF YSPR GTP +N+ + 
Sbjct: 293 LRAIRPDLSVATDFIVGFPGETDADFAKTMDLVHEIGYDNSFSFIYSPRPGTPAANLHDD 352

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVL 440
               VK ERL  LQ  +       ++  VG +  +L+E    K+  +L GR+   + V  
Sbjct: 353 TPHAVKLERLKHLQATIDANMARISEGMVGSVQRILVEGPSRKDPSELHGRTENNRVVNF 412

Query: 441 NSKNH-------NIGDIIKVRITDVKISTLYGELVV 469
              +         +G ++ VRI      +L GE+VV
Sbjct: 413 ALPDLSQARRDQLVGQMLDVRIVHAFPHSLRGEVVV 448


>gi|146293949|ref|YP_001184373.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Shewanella
           putrefaciens CN-32]
 gi|229890654|sp|A4Y9E1|MIAB_SHEPC RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|145565639|gb|ABP76574.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Shewanella putrefaciens
           CN-32]
          Length = 474

 Score =  478 bits (1230), Expect = e-132,   Method: Composition-based stats.
 Identities = 195/449 (43%), Positives = 286/449 (63%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++  +K++GCQMN YDS +M D+    QGY       +AD+++LNTC IREKA EKV+
Sbjct: 1   MSKKLHIKTWGCQMNEYDSSKMADLLGEYQGYTLTEDASEADILLLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR + LK+       +L++ V GCVA  EG+ I  R+  V+++ GPQT +RLP+++E
Sbjct: 61  HQLGRWKTLKDK----NPNLIIGVGGCVASQEGKAIKDRAQCVDIIFGPQTLHRLPDMIE 116

Query: 142 RARFG-KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           + R G K V+D  +   +KF+RL        R  G TAF++I EGC K+C+FCVVPYTRG
Sbjct: 117 QVRRGDKAVIDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCSKYCSFCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR L  ++ E  +L + GV E+ LLGQNVNA+RG   DG  C+F++LL  ++ I G+
Sbjct: 172 EEVSRPLDDIILEIAQLAEQGVREVNLLGQNVNAYRGATHDGSICSFAELLRFVAAIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+TTSHP + +  +I  + D   L+ +LHLPVQSGSDRIL +M R H A EY+ II 
Sbjct: 232 DRIRFTTSHPIEFTQDIIDVYEDTPELVSFLHLPVQSGSDRILTAMKRGHMAIEYKSIIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           R+R  R  I ISSDFI+GFPGET +DF  TM L+++IG+  +FSF YS R GTP +++ +
Sbjct: 292 RLRKAREGIQISSDFIIGFPGETKEDFADTMKLIEEIGFDHSFSFIYSARPGTPAADLPD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVV 439
            VD   K +RL  LQ ++ +Q + ++   +G +  +L+E    K   +L GR+   + V 
Sbjct: 352 NVDMEEKKQRLAILQDRITQQAMRYSRHMMGTVQRILVEGPSVKNPMELRGRTENNRVVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                 +IG  + V I DV  ++L G+ +
Sbjct: 412 FEGLPKHIGTFVDVEIVDVYTNSLRGKFI 440


>gi|157826266|ref|YP_001493986.1| hypothetical protein A1C_06245 [Rickettsia akari str. Hartford]
 gi|229890630|sp|A8GQ03|MIAB_RICAH RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|157800224|gb|ABV75478.1| hypothetical protein A1C_06245 [Rickettsia akari str. Hartford]
          Length = 445

 Score =  478 bits (1230), Expect = e-132,   Method: Composition-based stats.
 Identities = 234/449 (52%), Positives = 330/449 (73%), Gaps = 7/449 (1%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + +  ++K+YGCQMNVYDS++M+D+ +  GYE   ++++AD+I+LNTCHIREKAAEK YS
Sbjct: 1   MSKNLYIKTYGCQMNVYDSVKMQDLLYPFGYEPTENIEEADVIILNTCHIREKAAEKTYS 60

Query: 83  FLGRIRNLKNSRIKEG-GDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
            LGRI+ L+++R K+G    ++VVAGCVAQAEGEEI  R+P V++VVGPQ+YY LPEL+ 
Sbjct: 61  ELGRIKKLQDTRKKQGLNSAIIVVAGCVAQAEGEEIFTRTPYVDIVVGPQSYYNLPELIS 120

Query: 142 R-ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           +  R  K ++D D+  E KF+ L          +G ++F+++QEGCDKFCTFCVVPYTRG
Sbjct: 121 KIVRHAKHLIDLDFVEEAKFDNLP----EQLYPQGASSFISVQEGCDKFCTFCVVPYTRG 176

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E SR++ QV  EA +++  G  EI LLGQNVNA+  KG   +  + +DLL  L++I  L
Sbjct: 177 AEFSRNVEQVYREALQVVSGGAKEIMLLGQNVNAYNWKGSADKIFSLADLLKHLAQIPNL 236

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            RLRY TSHP DM+D LI+ HG    LMP+LHLPVQSGS++ILK+MNR+H    Y  II+
Sbjct: 237 ERLRYMTSHPIDMTDDLIQLHGTEPKLMPFLHLPVQSGSNKILKAMNRKHDREYYFDIIN 296

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           R+R  RPDI +SSDFIVGFPGETD+DF  T+DLV ++ Y Q +SFKYSPR GTPG+   +
Sbjct: 297 RLREARPDIVLSSDFIVGFPGETDEDFEDTLDLVRRVKYGQCYSFKYSPRPGTPGATRTD 356

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440
           Q+ E++K+ERL  LQK+L +QQ++ N++CVG  I+VL ++ GK   +++G++ ++QSV +
Sbjct: 357 QIPEHIKSERLTILQKELMDQQLACNESCVGSTIKVLFDRSGKFDDQIIGKTIYMQSVYI 416

Query: 441 NSKN-HNIGDIIKVRITDVKISTLYGELV 468
            + N   +G II V+IT   +++L GE++
Sbjct: 417 QNPNKSLLGKIIDVKITKASLNSLTGEIL 445


>gi|300024986|ref|YP_003757597.1| RNA modification enzyme, MiaB family [Hyphomicrobium denitrificans
           ATCC 51888]
 gi|299526807|gb|ADJ25276.1| RNA modification enzyme, MiaB family [Hyphomicrobium denitrificans
           ATCC 51888]
          Length = 449

 Score =  477 bits (1229), Expect = e-132,   Method: Composition-based stats.
 Identities = 244/444 (54%), Positives = 319/444 (71%), Gaps = 5/444 (1%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + +F+K++GCQMNVYDS RM +     GY   + +D ADL++LNTCHIREKAAEKVYS L
Sbjct: 7   KTYFLKTFGCQMNVYDSERMAETLARDGYSETSDVDGADLVILNTCHIREKAAEKVYSEL 66

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GRIR++KN R K+G + ++ VAGCVAQAEG EI  R P V++V+GPQ+Y+RLPEL+ R  
Sbjct: 67  GRIRDVKNERAKDGKNTVIAVAGCVAQAEGPEITARQPAVDLVIGPQSYHRLPELITRTT 126

Query: 145 FG-KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
              K +V+T++  ++KF R+        R    +AFLTIQEGCDKFCTFCVVPYTRG E 
Sbjct: 127 VDRKHIVETEFPGDEKFARMKAPR----RISSPSAFLTIQEGCDKFCTFCVVPYTRGSEY 182

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SRS++++  EA +L   G  E+ LLGQNVNA+ G+G DG   + +DL+ +L+ I+G+ R+
Sbjct: 183 SRSVAKIEAEAHELARAGAKELVLLGQNVNAYHGEGADGRTASLADLIRTLAAIEGVERI 242

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           RY TSHPRDMSD LI AH D+  LMP+LHLPVQSGSDRIL  MNR+HTA EY  +I RIR
Sbjct: 243 RYMTSHPRDMSDDLIAAHADVPQLMPFLHLPVQSGSDRILAKMNRKHTAAEYVDLIARIR 302

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
             RPDIA+SSDFIVGFPGET+ D   T+ L++ +G+AQAFSFKYS R GTP +   +Q+D
Sbjct: 303 KARPDIALSSDFIVGFPGETEQDAEDTIALIEAVGFAQAFSFKYSARPGTPAAGHGDQLD 362

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
           E VK+ERLL LQ  L  QQVSFN   +G ++ VL E+ G+E G+ VGR+P+LQ V    +
Sbjct: 363 EAVKSERLLRLQAVLDAQQVSFNAQSLGGVVPVLFERKGREAGEFVGRTPYLQLVHAAGE 422

Query: 444 NHNIGDIIKVRITDVKISTLYGEL 467
              IG    V + + + S+L G +
Sbjct: 423 GDLIGKTANVAVNETRRSSLSGVI 446


>gi|161523785|ref|YP_001578797.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Burkholderia
           multivorans ATCC 17616]
 gi|189351454|ref|YP_001947082.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Burkholderia
           multivorans ATCC 17616]
 gi|221200110|ref|ZP_03573153.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia multivorans
           CGD2M]
 gi|221206737|ref|ZP_03579749.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia multivorans
           CGD2]
 gi|229890459|sp|A9AFF8|MIAB_BURM1 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|160341214|gb|ABX14300.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia multivorans
           ATCC 17616]
 gi|189335476|dbj|BAG44546.1| bifunctional enzyme [Burkholderia multivorans ATCC 17616]
 gi|221173392|gb|EEE05827.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia multivorans
           CGD2]
 gi|221180349|gb|EEE12753.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia multivorans
           CGD2M]
          Length = 457

 Score =  477 bits (1229), Expect = e-132,   Method: Composition-based stats.
 Identities = 197/456 (43%), Positives = 291/456 (63%), Gaps = 18/456 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++ +VK++GCQMN YDS +M D+   ++G E+ +S +DAD+I+ NTC +REKA EKV+
Sbjct: 1   MTKKVYVKTFGCQMNEYDSDKMVDVLNAAEGLEKTDSPEDADIILFNTCSVREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S LGR+R LK +      DLL+ V GCVA  EG  I+ R+P V++V GPQT +RLP++++
Sbjct: 61  SDLGRVRELKEA----KPDLLIGVGGCVASQEGASIVSRAPYVDLVFGPQTLHRLPQMID 116

Query: 142 RAR-FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
             R  G+  VD  +   +KF+ L        R  G TAF++I EGC K+C++CVVPYTRG
Sbjct: 117 ARRTSGRAQVDITFPEIEKFDHLPPA-----RVEGPTAFVSIMEGCSKYCSYCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG--EKCTFSDLLYSLSEIK 258
            E+SR L  V+ E   L D GV E+TLLGQNVNA+RG    G  E   F+ L+  +++I 
Sbjct: 172 DEVSRPLDDVLTEVAGLADQGVREVTLLGQNVNAYRGALTAGSSEVADFATLIEYVADIP 231

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           G+ R+RYTTSHP++ +  LI  +  +  L+ +LHLPVQ GSDRIL +M R +T  EY+ +
Sbjct: 232 GIERIRYTTSHPKEFTQRLIDTYAKVPKLVNHLHLPVQHGSDRILMAMKRGYTVLEYKSV 291

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           I ++R++RPD+++S+D IVGFPGET++DF   M LV  + Y  +FSF YSPR GTP +N+
Sbjct: 292 IRKLRAIRPDLSLSTDLIVGFPGETEEDFDKMMALVHDMRYDTSFSFIYSPRPGTPAANL 351

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQS 437
            +    +VK +RL  +Q  + E     + + VG++  +L+E    K+  +L GR+   + 
Sbjct: 352 HDDTPRDVKLKRLQLVQATIEENVARISQSMVGKVERILVEGPSRKDPNELAGRTENNRV 411

Query: 438 VVLNSK----NHNIGDIIKVRITDVKISTLYGELVV 469
           V   +        IG +I V+I      +L GELV+
Sbjct: 412 VNFPAPLAAHPRLIGQMIDVKINHAYPHSLRGELVL 447


>gi|227114980|ref|ZP_03828636.1| hypothetical protein PcarbP_18561 [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 474

 Score =  477 bits (1229), Expect = e-132,   Method: Composition-based stats.
 Identities = 197/449 (43%), Positives = 286/449 (63%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++  +K++GCQMN YDS +M D+  S  GYE     ++AD+++LNTC IREKA EKV+
Sbjct: 1   MTKKLHIKTWGCQMNEYDSSKMADLLGSTHGYELTEIAEEADVLLLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR + LK+       +L++ V GCVA  EG  I  R+  V+V+ GPQT +RLPE++ 
Sbjct: 61  HQLGRWKTLKD----LNPNLIIGVGGCVASQEGAHIRERAHYVDVIFGPQTLHRLPEMIN 116

Query: 142 RARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
             +  +  +VD  +   +KF+RL        R  G TAF++I EGC+K+CTFCVVPYTRG
Sbjct: 117 HVQGTRSPIVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTFCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR    V+ E  +L   GV E+ LLGQNVNA+RG+  DGE C+F++LL  ++ I G+
Sbjct: 172 EEVSRPCDDVLFEIAQLAAQGVREVNLLGQNVNAYRGETYDGEICSFAELLRLVAAIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+TTSHP + +D +I  + D   L+ +LHLPVQSGSDR+L  M RRHTA EY+ II 
Sbjct: 232 DRVRFTTSHPIEFTDDIISVYEDTPELVSFLHLPVQSGSDRVLTMMKRRHTALEYKAIIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++ + RP I ISSDFIVGFPGET  DF  TM L+  + +  ++SF YS R GTP ++M++
Sbjct: 292 KLHNARPGILISSDFIVGFPGETQADFEQTMKLITDVNFDMSYSFVYSARPGTPAADMVD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439
            V E  K +RL  LQ+++ +Q + F+   +G +  +L+E   ++   +L GR+   + V 
Sbjct: 352 DVPEEEKKQRLYLLQERITQQAMRFSRLMLGTVQRILVEGTSRKSVMELSGRTENNRVVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG  + V I DV  ++L G +V
Sbjct: 412 FEGTPDMIGKFVDVEIVDVYTNSLRGIVV 440


>gi|221124262|ref|XP_002159653.1| PREDICTED: similar to CDK5 regulatory subunit associated protein 1
           [Hydra magnipapillata]
 gi|260220064|emb|CBA27228.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Curvibacter putative symbiont of Hydra magnipapillata]
          Length = 445

 Score =  477 bits (1229), Expect = e-132,   Method: Composition-based stats.
 Identities = 200/451 (44%), Positives = 286/451 (63%), Gaps = 15/451 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++ F+K++GCQMN YDS +M D+   +QGYE  + ++ ADLI+ NTC +REKA EKV+
Sbjct: 1   MSKKVFIKTFGCQMNEYDSDKMADVLGAAQGYEPTDDVEQADLILFNTCSVREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S LGRI++LK         + + V GCVA  EG EI++R+P V+VV GPQT +RLPE+L 
Sbjct: 61  SDLGRIKHLKAK------GVQIGVGGCVASQEGAEIIKRAPYVDVVFGPQTLHRLPEMLN 114

Query: 142 -RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
            R    K  VD  +   +KF+ L        +  G +AF++I EGC K+C++CVVPYTRG
Sbjct: 115 ARKALDKPQVDISFPEIEKFDHLPPA-----KVDGASAFVSIMEGCSKYCSYCVVPYTRG 169

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKG 259
            EI+R    V+ E   L D GV E+ LLGQNVNAWR    D GE   F+ LL  +S+I G
Sbjct: 170 TEINRPFEDVLVEIAGLADQGVKEVNLLGQNVNAWRNAMGDSGEMADFATLLEYVSDIPG 229

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           + R+RYTTSHP + +  LI A+  L  L+ +LHLPVQ GSD+IL +M R +TA EY+  I
Sbjct: 230 IERIRYTTSHPNEFTPSLIAAYEKLPKLVSHLHLPVQHGSDKILMAMKRGYTAMEYKSTI 289

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            ++R++RPD++ISSDFIVGFPGETD+D    M L+  IG+  +FSF +SPR GTP +N+ 
Sbjct: 290 RKLRAIRPDMSISSDFIVGFPGETDEDHAKMMKLIHDIGFDNSFSFIFSPRPGTPAANLH 349

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSV 438
           +     VK  RL  LQ  +     + ++  +G +  +L+E   K + G+L+GR+   + V
Sbjct: 350 DDTPHEVKLARLQELQAAINANIATISNQRLGTVQRILVEGGSKRDNGELMGRTECNRVV 409

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
                   +G ++ V IT+ +  TL GE++ 
Sbjct: 410 NFAGNPRLVGQLVDVTITETRSYTLRGEVLT 440


>gi|196247551|ref|ZP_03146253.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Geobacillus sp. G11MC16]
 gi|229890686|sp|A4IMH7|MIAB_GEOTN RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|196212335|gb|EDY07092.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Geobacillus sp. G11MC16]
          Length = 523

 Score =  477 bits (1229), Expect = e-132,   Method: Composition-based stats.
 Identities = 182/447 (40%), Positives = 262/447 (58%), Gaps = 15/447 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++F++++YGCQMN +D+  M  +F + GYE  +  +DA++I+LNTC IRE A  KV+  L
Sbjct: 80  RKFYIRTYGCQMNEHDTEVMAGIFMALGYEPTDRPEDANVILLNTCAIRENAENKVFGEL 139

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQ--AEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
           G ++ LK        DLL+ V GC++Q  A   +IL++   V+++ G    +RLP +L  
Sbjct: 140 GYLKPLKT----TNPDLLLGVCGCMSQEEAVVNKILKQYQYVDLIFGTHNIHRLPYILHE 195

Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           A   K +V   +S E D  E L  V     RK  + A++ I  GCDKFCT+C+VPYTRG 
Sbjct: 196 AYMSKEMVVEVWSKEGDVVENLPKV-----RKGNIKAWVNIMYGCDKFCTYCIVPYTRGK 250

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR    ++ E R+L   G  EITLLGQNVNA  GK  +  +    DL+  L +I  + 
Sbjct: 251 ERSRRPEDIIQEVRQLAAQGYKEITLLGQNVNA-YGKDFNDIQYGLGDLMDELRKID-IA 308

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHPRD  D LI+       L+ ++HLPVQSGS  ILK M R++T  EY +++ +
Sbjct: 309 RIRFTTSHPRDFDDRLIEVLAKRGNLVEHIHLPVQSGSTEILKMMGRKYTREEYLELVRK 368

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I++  PD+A+++D IVGFP ETD+ F  T+ L  ++ +  A++F YSPR GTP + M + 
Sbjct: 369 IKAAIPDVALTTDIIVGFPNETDEQFEETLSLYREVEFDSAYTFIYSPREGTPAAKMNDN 428

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVL 440
           V   VK ERL  L   ++E          GQ++EVL+E   K     L G +   + V  
Sbjct: 429 VPMEVKKERLQRLNALVQEIAAKKMKQYEGQVVEVLVEGESKTNPDVLAGYTRKNKLVHF 488

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGEL 467
                 IG ++ VRIT  K  TL GEL
Sbjct: 489 VGPKSLIGQLVNVRITQAKTWTLTGEL 515


>gi|15640978|ref|NP_230609.1| hypothetical protein VC0962 [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121591016|ref|ZP_01678333.1| conserved hypothetical protein [Vibrio cholerae 2740-80]
 gi|147675479|ref|YP_001216435.1| hypothetical protein VC0395_A0484 [Vibrio cholerae O395]
 gi|153820006|ref|ZP_01972673.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457]
 gi|153827451|ref|ZP_01980118.1| conserved hypothetical protein [Vibrio cholerae MZO-2]
 gi|183179699|ref|ZP_02957910.1| conserved hypothetical protein [Vibrio cholerae MZO-3]
 gi|227081136|ref|YP_002809687.1| hypothetical protein VCM66_0918 [Vibrio cholerae M66-2]
 gi|229505438|ref|ZP_04394948.1| tRNA-i(6)A37 methylthiotransferase [Vibrio cholerae BX 330286]
 gi|229510892|ref|ZP_04400371.1| tRNA-i(6)A37 methylthiotransferase [Vibrio cholerae B33]
 gi|229512945|ref|ZP_04402411.1| tRNA-i(6)A37 methylthiotransferase [Vibrio cholerae TMA 21]
 gi|229518013|ref|ZP_04407457.1| tRNA-i(6)A37 methylthiotransferase [Vibrio cholerae RC9]
 gi|229523246|ref|ZP_04412653.1| tRNA-i(6)A37 methylthiotransferase [Vibrio cholerae TM 11079-80]
 gi|229525572|ref|ZP_04414977.1| tRNA-i(6)A37 methylthiotransferase [Vibrio cholerae bv. albensis
           VL426]
 gi|229529943|ref|ZP_04419333.1| tRNA-i(6)A37 methylthiotransferase [Vibrio cholerae 12129(1)]
 gi|229608457|ref|YP_002879105.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Vibrio
           cholerae MJ-1236]
 gi|254225710|ref|ZP_04919316.1| conserved hypothetical protein [Vibrio cholerae V51]
 gi|254285632|ref|ZP_04960596.1| conserved hypothetical protein [Vibrio cholerae AM-19226]
 gi|254848093|ref|ZP_05237443.1| conserved hypothetical protein [Vibrio cholerae MO10]
 gi|255744745|ref|ZP_05418696.1| tRNA-i(6)A37 methylthiotransferase [Vibrio cholera CIRS 101]
 gi|262161121|ref|ZP_06030232.1| tRNA-i(6)A37 methylthiotransferase [Vibrio cholerae INDRE 91/1]
 gi|262168624|ref|ZP_06036319.1| tRNA-i(6)A37 methylthiotransferase [Vibrio cholerae RC27]
 gi|298498922|ref|ZP_07008729.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Vibrio cholerae MAK 757]
 gi|81545216|sp|Q9KTE0|MIAB_VIBCH RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|229891023|sp|A5F2X6|MIAB_VIBC3 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|9655421|gb|AAF94124.1| conserved hypothetical protein [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121547126|gb|EAX57258.1| conserved hypothetical protein [Vibrio cholerae 2740-80]
 gi|125621718|gb|EAZ50046.1| conserved hypothetical protein [Vibrio cholerae V51]
 gi|126509457|gb|EAZ72051.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457]
 gi|146317362|gb|ABQ21901.1| conserved hypothetical protein [Vibrio cholerae O395]
 gi|149738628|gb|EDM52981.1| conserved hypothetical protein [Vibrio cholerae MZO-2]
 gi|150424494|gb|EDN16431.1| conserved hypothetical protein [Vibrio cholerae AM-19226]
 gi|183013110|gb|EDT88410.1| conserved hypothetical protein [Vibrio cholerae MZO-3]
 gi|227009024|gb|ACP05236.1| conserved hypothetical protein [Vibrio cholerae M66-2]
 gi|227012779|gb|ACP08989.1| conserved hypothetical protein [Vibrio cholerae O395]
 gi|229333717|gb|EEN99203.1| tRNA-i(6)A37 methylthiotransferase [Vibrio cholerae 12129(1)]
 gi|229339153|gb|EEO04170.1| tRNA-i(6)A37 methylthiotransferase [Vibrio cholerae bv. albensis
           VL426]
 gi|229339609|gb|EEO04624.1| tRNA-i(6)A37 methylthiotransferase [Vibrio cholerae TM 11079-80]
 gi|229344728|gb|EEO09702.1| tRNA-i(6)A37 methylthiotransferase [Vibrio cholerae RC9]
 gi|229349838|gb|EEO14792.1| tRNA-i(6)A37 methylthiotransferase [Vibrio cholerae TMA 21]
 gi|229350857|gb|EEO15798.1| tRNA-i(6)A37 methylthiotransferase [Vibrio cholerae B33]
 gi|229357661|gb|EEO22578.1| tRNA-i(6)A37 methylthiotransferase [Vibrio cholerae BX 330286]
 gi|229371112|gb|ACQ61535.1| tRNA-i(6)A37 methylthiotransferase [Vibrio cholerae MJ-1236]
 gi|254843798|gb|EET22212.1| conserved hypothetical protein [Vibrio cholerae MO10]
 gi|255737776|gb|EET93170.1| tRNA-i(6)A37 methylthiotransferase [Vibrio cholera CIRS 101]
 gi|262022742|gb|EEY41448.1| tRNA-i(6)A37 methylthiotransferase [Vibrio cholerae RC27]
 gi|262028871|gb|EEY47524.1| tRNA-i(6)A37 methylthiotransferase [Vibrio cholerae INDRE 91/1]
 gi|297543255|gb|EFH79305.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Vibrio cholerae MAK 757]
 gi|327483685|gb|AEA78092.1| tRNA-i(6)A37 methylthiotransferase [Vibrio cholerae LMA3894-4]
          Length = 474

 Score =  477 bits (1229), Expect = e-132,   Method: Composition-based stats.
 Identities = 196/449 (43%), Positives = 285/449 (63%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++  +K++GCQMN YDS +M D+   + GYE     ++AD+++LNTC IREKA EKV+
Sbjct: 1   MSKKLLIKTWGCQMNEYDSSKMADLLNAANGYELTEIPEEADVLLLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR + LK+ +      +   V    A  EG+ I  R+P V+V+ GPQT +RLPE+++
Sbjct: 61  HQLGRWKTLKDKKPGVVIGVGGCV----ATQEGDSIRDRAPYVDVIFGPQTLHRLPEMIK 116

Query: 142 RARFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           +++     V+D  +   +KF+RL        R  G TAF++I EGC K+CT+CVVPYTRG
Sbjct: 117 QSQTSDAPVMDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCSKYCTYCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR +  V+ E  +L + GV E+ LLGQNVNA+RG   DG  C+F++LL  ++ I G+
Sbjct: 172 EEVSRPMDDVLFEIAQLAEQGVREVNLLGQNVNAYRGATHDGGICSFAELLRLVATIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+TTSHP + +D +I  + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II 
Sbjct: 232 DRIRFTTSHPLEFTDDIIAVYEDTPELVSFLHLPVQSGSDRILTMMKRPHTAIEYKSIIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R  RPDI ISSDFIVGFPGETD DF+ TM L+  + +  +FSF +SPR GTP ++   
Sbjct: 292 KLRKARPDIQISSDFIVGFPGETDKDFQDTMKLIRDVDFDMSFSFIFSPRPGTPAADYPC 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439
            + E VK ERL  LQ+++  Q + ++   +G    +L+E   K+   +L GR+   + V 
Sbjct: 352 DLSEEVKKERLYELQQQINSQAMRYSRLMLGTEQRILVEGPSKKDLMELRGRTENNRVVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG  + V+I DV  ++L GEL+
Sbjct: 412 FEGSPDLIGQFVDVKIVDVFPNSLRGELL 440


>gi|261822377|ref|YP_003260483.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Pectobacterium wasabiae
           WPP163]
 gi|261606390|gb|ACX88876.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Pectobacterium wasabiae
           WPP163]
          Length = 474

 Score =  477 bits (1229), Expect = e-132,   Method: Composition-based stats.
 Identities = 196/449 (43%), Positives = 287/449 (63%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++  +K++GCQMN YDS +M D+  S  GYE     ++AD+++LNTC IREKA EKV+
Sbjct: 1   MTKKLHIKTWGCQMNEYDSSKMADLLGSTHGYELTEIAEEADVLLLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR + LK+       +L++ V GCVA  EG  I  R+  V+V+ GPQT +RLPE++ 
Sbjct: 61  HQLGRWKALKD----LNPNLIIGVGGCVASQEGAHIRERAHYVDVIFGPQTLHRLPEMIN 116

Query: 142 RARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
             +  +  +VD  +   +KF+RL        R  G TAF++I EGC+K+CTFCVVPYTRG
Sbjct: 117 HVQGTRSPIVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTFCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR    V+ E  +L   GV E+ LLGQNVNA+RG+  DGE C+F++LL  ++ I G+
Sbjct: 172 EEVSRPCDDVLFEIAQLAAQGVREVNLLGQNVNAYRGETYDGEICSFAELLRLVAAIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+TTSHP + +D +I+ + D   L+ +LHLPVQSGSDR+L  M RRHTA EY+ II 
Sbjct: 232 DRVRFTTSHPIEFTDDIIRVYEDTPELVSFLHLPVQSGSDRVLTMMKRRHTALEYKAIIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++ + RP I ISSDFI+GFPGET  DF  TM L+  + +  ++SF YS R GTP ++M++
Sbjct: 292 KLHNARPGILISSDFIIGFPGETQADFEQTMKLIADVNFDMSYSFVYSARPGTPAADMVD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439
            V E  K +RL  LQ+++ +Q + F+   +G +  +L+E   ++   +L GR+   + V 
Sbjct: 352 DVPEEEKKQRLYLLQERITQQAMRFSRLMLGTVQRILVEGTSRKSVMELSGRTENNRVVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG  + V I DV  ++L G +V
Sbjct: 412 FEGTPDMIGKFVDVEIVDVYTNSLRGIVV 440


>gi|229890685|sp|B2VBL4|MIAB_ERWT9 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
          Length = 474

 Score =  477 bits (1229), Expect = e-132,   Method: Composition-based stats.
 Identities = 194/446 (43%), Positives = 287/446 (64%), Gaps = 12/446 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++  +K++GCQMN YDS +M D+  S  GY      +DAD+++LNTC IREKA EKV+
Sbjct: 1   MTKKLHIKTWGCQMNEYDSSKMADLLNSTHGYTLTEQAEDADVLLLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           + LGR + LK S      D+++ V GCVA  EG +I +R+  V++V GPQT +RLPE++ 
Sbjct: 61  ALLGRWKKLKES----NPDMIIGVGGCVASQEGAQIRQRASCVDIVFGPQTLHRLPEMIN 116

Query: 142 RARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
             R  +  VVD  +   +KF+R+        R  G TAF++I EGC+K+CTFCVVPYTRG
Sbjct: 117 SVRGTRSPVVDVSFPEIEKFDRMP-----EPRADGPTAFVSIMEGCNKYCTFCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR    ++ E  +L   GV E+ LLGQNVNA+RG+  DG  C+F++LL  ++ I G+
Sbjct: 172 EEVSRPSDDILFEVAQLAAQGVREVNLLGQNVNAYRGETFDGGICSFAELLRLVAAIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+TTSHP + +D +I  + D   L+ +LHLPVQSG+DRIL  M R HTA EY+ II 
Sbjct: 232 DRIRFTTSHPIEFNDDIIDVYRDTPELVSFLHLPVQSGADRILTLMKRAHTALEYKAIIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++ + RP+I ISSDFI+GFPGET  DF  TM L+ +I +  ++SF YS R GTP +++ +
Sbjct: 292 KLLAARPNIQISSDFIIGFPGETQADFEQTMKLIGEINFDISYSFIYSARPGTPAADLPD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439
            V E+ K +RL  LQ ++ +Q  +++   +G +  +L+E   ++   +L GR+   + V 
Sbjct: 352 DVSEDEKKQRLYILQDRINQQTTAWSRRKLGTVQRILVEGTSRKNVMELSGRTECNRVVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYG 465
                 +IG  + V ITDV  ++L G
Sbjct: 412 FEGSPEHIGKFVDVEITDVYANSLRG 437


>gi|37679101|ref|NP_933710.1| 2-methylthioadenine synthetase [Vibrio vulnificus YJ016]
 gi|81758131|sp|Q7MN00|MIAB_VIBVY RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|37197843|dbj|BAC93681.1| 2-methylthioadenine synthetase [Vibrio vulnificus YJ016]
          Length = 474

 Score =  477 bits (1229), Expect = e-132,   Method: Composition-based stats.
 Identities = 195/449 (43%), Positives = 283/449 (63%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++  +K++GCQMN YDS +M D+   + GYE     ++AD+++LNTC IREKA EKV+
Sbjct: 1   MSKKLLIKTWGCQMNEYDSSKMADLLNAANGYELTEEPEEADVLLLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR + LK+ +      +   V    A  EG+ I  R+P V+V+ GPQT +RLPE+++
Sbjct: 61  HQLGRWKTLKDKKPGVVIGVGGCV----ATQEGDHIRERAPFVDVIFGPQTLHRLPEMIK 116

Query: 142 RARFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           +++     V+D  +   +KF+ L        R  G TAF++I EGC K+CT+CVVPYTRG
Sbjct: 117 QSQSEDAPVMDISFPEIEKFDSLP-----EPRAEGATAFVSIMEGCSKYCTYCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR +  V+ E  +L + GV E+ LLGQNVNA+RG   DGE C+F++LL  ++ I G+
Sbjct: 172 EEVSRPMDDVLYEIAQLAEQGVREVNLLGQNVNAYRGPMHDGEICSFAELLRLVASIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+TTSHP + +D +I  + D   L+ +LHLPVQSGSDRIL  M R HT  EY+ II 
Sbjct: 232 DRIRFTTSHPLEFTDDIIAVYEDTPELVSFLHLPVQSGSDRILTMMKRPHTGIEYKSIIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R  RPDI ISSDFIVGFPGETD DF+ TM L+  + +  +FSF +SPR GTP ++   
Sbjct: 292 KLRKARPDIQISSDFIVGFPGETDKDFQDTMKLIKDVDFDMSFSFIFSPRPGTPAADYPC 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439
            + E  K ERL  LQ+++  Q + ++   +G    VL+E   K+   +L  R+   + V 
Sbjct: 352 DLSEETKKERLYELQQQINAQAMRYSRLMLGTEQRVLVEGPSKKNLMELRARTENNRVVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG  + V+ITDV  ++L GE+V
Sbjct: 412 FEGSADLIGQFVDVKITDVFANSLRGEIV 440


>gi|307730932|ref|YP_003908156.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia sp.
           CCGE1003]
 gi|307585467|gb|ADN58865.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia sp.
           CCGE1003]
          Length = 461

 Score =  477 bits (1228), Expect = e-132,   Method: Composition-based stats.
 Identities = 195/456 (42%), Positives = 293/456 (64%), Gaps = 18/456 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++ +VK++GCQMN YDS +M D+   ++G  + ++ +DAD+I+ NTC +REKA EKV+
Sbjct: 1   MTKKVYVKTFGCQMNEYDSDKMVDVLGAAEGLVKTDTPEDADVILFNTCSVREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S LGR+R LK +      DL++ V GCVA  EG  I+ R+P V++V GPQT +RLP++++
Sbjct: 61  SDLGRVRELKEA----NPDLIIGVGGCVASQEGASIVARAPYVDLVFGPQTLHRLPQMID 116

Query: 142 RARF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           + R  G+  VD  +   +KF+ L        R  G +AF++I EGC K+C++CVVPYTRG
Sbjct: 117 KRRASGRAQVDITFPEIEKFDHLPPA-----RVEGPSAFVSIMEGCSKYCSYCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG--EKCTFSDLLYSLSEIK 258
            E+SR L  V+ E   L D GV E+TLLGQNVNA+RG    G  E   F+ L+  ++EI 
Sbjct: 172 EEVSRPLDDVLTEIAGLADQGVREVTLLGQNVNAFRGALTLGSSEIADFATLIEYVAEIP 231

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           G+ R+RYTTSHP++ +  LI  +  +  L+ +LHLPVQ GSDRIL +M R +T  EY+ +
Sbjct: 232 GIERIRYTTSHPKEFTQRLIDTYAKVPKLVSHLHLPVQHGSDRILMAMKRGYTVLEYKSV 291

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           I ++R++RPD+++S+D IVGFPGET++DF   M LV ++ Y  +FSF YSPR GTP +N+
Sbjct: 292 IRKLRAIRPDLSLSTDMIVGFPGETEEDFDKMMALVHEMKYDTSFSFIYSPRPGTPAANL 351

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQS 437
            +     VK +RL  LQ  + E     +D+ VG++  +L+E+   K+  +L GR+   + 
Sbjct: 352 PDDTPREVKLKRLQHLQATIEENVQRISDSMVGKVERILVERPARKDPNELAGRTENNRV 411

Query: 438 VVLNSK----NHNIGDIIKVRITDVKISTLYGELVV 469
           V   +        IG ++ V+I      +L GELV+
Sbjct: 412 VNFPAPVASHARLIGQMVDVKIVKAYPHSLRGELVL 447


>gi|126735009|ref|ZP_01750755.1| tRNA-i(6)A37 modification enzyme MiaB [Roseobacter sp. CCS2]
 gi|126715564|gb|EBA12429.1| tRNA-i(6)A37 modification enzyme MiaB [Roseobacter sp. CCS2]
          Length = 435

 Score =  477 bits (1228), Expect = e-132,   Method: Composition-based stats.
 Identities = 235/443 (53%), Positives = 312/443 (70%), Gaps = 13/443 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
            P++ ++K+YGCQMNVYDS RM +    +GY    + DDAD+I+LNTCHIREKAAEKVYS
Sbjct: 3   APKKLYIKTYGCQMNVYDSERMAEALGGKGYVETQTPDDADMILLNTCHIREKAAEKVYS 62

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            LGR + LK        DL + VAGCVAQAEGEEI++R P+V++VVGPQ+Y+RLP + + 
Sbjct: 63  ELGRFKRLKAE----NPDLKIGVAGCVAQAEGEEIIKRQPMVDLVVGPQSYHRLPAMDDA 118

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            + G + +DTD+  +DKFE L         KRG TAFLT+QEGCDKFC FCVVPYTRG E
Sbjct: 119 IQTGAKALDTDFPDDDKFETLKT---RTKAKRGPTAFLTVQEGCDKFCAFCVVPYTRGAE 175

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR   +++ EA++L+++GV EITLLGQNVNA+ G          + L+++L ++ GL R
Sbjct: 176 VSRPADRIIREAQELVESGVKEITLLGQNVNAYHGHAG-----GLAGLIWALDKVDGLER 230

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP DM D LI+AHG  D LMPYLHLPVQSGSDRILK+MNR+HT   Y ++I RI
Sbjct: 231 IRFTTSHPNDMDDALIEAHGRCDKLMPYLHLPVQSGSDRILKAMNRKHTGESYVRLIARI 290

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R  RPD+ +S DFIVGFPGETD DF  TM LV  + Y QA+SFKYS R GTP +    Q+
Sbjct: 291 RQARPDLLLSGDFIVGFPGETDQDFEDTMQLVRDVHYGQAYSFKYSTRPGTPAAEKP-QL 349

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
            E+V  +RL  LQ  LREQQ +   A VG+ ++VL EK G+E G+++G+S +L +V  ++
Sbjct: 350 PEDVMNDRLQRLQALLREQQQATQAAMVGREVKVLFEKAGREPGQMIGKSEYLHAVYADA 409

Query: 443 KNHNIGDIIKVRITDVKISTLYG 465
               IG + +V++     ++L G
Sbjct: 410 PADVIGQVRRVKVVQDSPNSLRG 432


>gi|310815234|ref|YP_003963198.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Ketogulonicigenium vulgare Y25]
 gi|308753969|gb|ADO41898.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Ketogulonicigenium vulgare Y25]
          Length = 440

 Score =  477 bits (1228), Expect = e-132,   Method: Composition-based stats.
 Identities = 235/453 (51%), Positives = 315/453 (69%), Gaps = 13/453 (2%)

Query: 17  IVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA 76
           + +Q    ++ F+K+YGCQMNVYDS RM +   +QGY   ++ ++AD+++LNTCHIREKA
Sbjct: 1   MDNQAEKTKKLFIKTYGCQMNVYDSERMAETLGAQGYVTTDNAEEADMVLLNTCHIREKA 60

Query: 77  AEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL 136
           AEKVYS LGR++ LK +       L + VAGCVAQAEG EI+RR P+V++VVGPQ+Y+ L
Sbjct: 61  AEKVYSDLGRLKPLKEA----NPQLKIGVAGCVAQAEGAEIMRRMPLVDLVVGPQSYHNL 116

Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
           P +  R + G+R VDTD+ V DKF +L         +RG TAFLT+QEGCDKFC FCVVP
Sbjct: 117 PAMEARVQSGRRAVDTDFEV-DKFTQLKARPRA---QRGPTAFLTVQEGCDKFCAFCVVP 172

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256
           YTRG E+SR   +++ EA+ L++ GV EITLLGQNVNAW G+G +G      DL+  L+ 
Sbjct: 173 YTRGSEVSRPADKIIAEAQGLVEAGVREITLLGQNVNAWHGQGAEG----LGDLVRRLAR 228

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           I GL R+RYTTSHP DM+D LI AH + + LMPYLHLPVQSGSDRILK+MNR+HTA +Y 
Sbjct: 229 IDGLARIRYTTSHPNDMADDLIAAHAEEEKLMPYLHLPVQSGSDRILKAMNRKHTAEQYL 288

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
           ++I+RIR+ RPDI +SSDFIVGFPGETD DF  T+ L  ++G+  +FSFKYS R GTP +
Sbjct: 289 RLIERIRAARPDIVLSSDFIVGFPGETDQDFEDTLQLCAEVGFGASFSFKYSARPGTPAA 348

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQ 436
              E +   +   RL  LQ ++  QQ +   + VG+ I VL EK G+  G+L+G+S +L 
Sbjct: 349 EKPE-LPPALLDARLQRLQAQIIAQQNASLASMVGRTIPVLFEKKGRMPGQLIGKSGYLH 407

Query: 437 SVVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
           +V  ++   +I +I  V I     ++L G L  
Sbjct: 408 AVHADAPESDIAEIRMVEIMATSTNSLAGRLAT 440


>gi|134296886|ref|YP_001120621.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Burkholderia
           vietnamiensis G4]
 gi|229890494|sp|A4JHN3|MIAB_BURVG RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|134140043|gb|ABO55786.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia
           vietnamiensis G4]
          Length = 457

 Score =  477 bits (1228), Expect = e-132,   Method: Composition-based stats.
 Identities = 194/456 (42%), Positives = 290/456 (63%), Gaps = 18/456 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++ +VK++GCQMN YDS +M D+   ++G E+ ++ +DAD+I+ NTC +REKA EKV+
Sbjct: 1   MTKKVYVKTFGCQMNEYDSDKMVDVLNAAEGLEKTDTPEDADIILFNTCSVREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S LGR+R LK +       LL+ V GCVA  EG  I+ R+P V++V GPQT +RLP++++
Sbjct: 61  SDLGRVRELKEA----KPGLLIGVGGCVASQEGASIVSRAPYVDLVFGPQTLHRLPQMID 116

Query: 142 RARF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
             R  G+  VD  +   +KF+ L        R  G +AF++I EGC K+C++CVVPYTRG
Sbjct: 117 ARRASGRAQVDITFPEIEKFDHLPPA-----RVEGPSAFVSIMEGCSKYCSYCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG--EKCTFSDLLYSLSEIK 258
            E+SR L  V+ E   L D GV E+TLLGQNVNA+RG    G  +   F+ L+  +++I 
Sbjct: 172 DEVSRPLDDVLTEVAGLADQGVREVTLLGQNVNAYRGALSAGSADIADFATLIEYVADIP 231

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           G+ R+RYTTSHP++ +  LI  +  +  L+ +LHLPVQ GSDRIL +M R +T  EY+ +
Sbjct: 232 GIERIRYTTSHPKEFTQRLIDTYAKVPKLVSHLHLPVQHGSDRILMAMKRGYTVLEYKSV 291

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           I ++R++RPD+++S+D IVGFPGET+DDF   M LV ++ Y  +FSF YSPR GTP +N+
Sbjct: 292 IRKLRAIRPDLSLSTDMIVGFPGETEDDFDKMMALVHEMSYDTSFSFIYSPRPGTPAANL 351

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQS 437
            +     VK +RL  LQ  + E     + + VG++  +L+E    K+  +L GR+   + 
Sbjct: 352 HDDTPREVKLKRLQHLQATIEENVARISQSMVGKVERILVEGPSRKDPNELSGRTENNRV 411

Query: 438 VVLNSK----NHNIGDIIKVRITDVKISTLYGELVV 469
           V   +        IG +I V+I      +L GEL++
Sbjct: 412 VNFPAPLASHPRLIGQMIDVKINHAYPHSLRGELLL 447


>gi|227327390|ref|ZP_03831414.1| hypothetical protein PcarcW_08718 [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 474

 Score =  477 bits (1228), Expect = e-132,   Method: Composition-based stats.
 Identities = 197/449 (43%), Positives = 286/449 (63%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++  +K++GCQMN YDS +M D+  S  GYE     ++AD+++LNTC IREKA EKV+
Sbjct: 1   MTKKLHIKTWGCQMNEYDSSKMADLLGSTHGYELTEIAEEADVLLLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR + LK+       +L++ V GCVA  EG  I  R+  V+V+ GPQT +RLPE++ 
Sbjct: 61  HQLGRWKTLKD----LNPNLIIGVGGCVASQEGTHIRERAHYVDVIFGPQTLHRLPEMIN 116

Query: 142 RARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
             +  +  +VD  +   +KF+RL        R  G TAF++I EGC+K+CTFCVVPYTRG
Sbjct: 117 HVQGTRSPIVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTFCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR    V+ E  +L   GV E+ LLGQNVNA+RG+  DGE C+F++LL  ++ I G+
Sbjct: 172 EEVSRPCDDVLFEIAQLAAQGVREVNLLGQNVNAYRGETYDGEICSFAELLRLVAAIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+TTSHP + +D +I  + D   L+ +LHLPVQSGSDR+L  M RRHTA EY+ II 
Sbjct: 232 DRVRFTTSHPIEFTDDIISVYEDTPELVSFLHLPVQSGSDRVLTMMKRRHTALEYKAIIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++ + RP I ISSDFIVGFPGET  DF  TM L+  + +  ++SF YS R GTP ++M++
Sbjct: 292 KLHNARPGILISSDFIVGFPGETQADFEQTMKLIADVNFDMSYSFVYSARPGTPAADMVD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439
            V E  K +RL  LQ+++ +Q + F+   +G +  +L+E   ++   +L GR+   + V 
Sbjct: 352 DVPEEEKKQRLYLLQERITQQAMRFSRLMLGTVQRILVEGTSRKSVMELSGRTENNRVVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG  + V I DV  ++L G +V
Sbjct: 412 FEGTPDMIGKFVDVEIVDVYTNSLRGIVV 440


>gi|261419508|ref|YP_003253190.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Geobacillus
           sp. Y412MC61]
 gi|319766323|ref|YP_004131824.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Geobacillus sp. Y412MC52]
 gi|261375965|gb|ACX78708.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Geobacillus sp. Y412MC61]
 gi|317111189|gb|ADU93681.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Geobacillus sp. Y412MC52]
          Length = 531

 Score =  477 bits (1228), Expect = e-132,   Method: Composition-based stats.
 Identities = 183/448 (40%), Positives = 265/448 (59%), Gaps = 15/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++F++++YGCQMN +D+  M  +F + GYE  +  ++A++I+LNTC IRE A  KV+  L
Sbjct: 80  RKFYIRTYGCQMNEHDTEVMAGIFMALGYEPTDRPEEANVILLNTCAIRENAENKVFGEL 139

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G ++ LK        DLL+ V GC++Q E   ++IL++   V+++ G    +RLP +L  
Sbjct: 140 GYLKPLKT----TNPDLLLGVCGCMSQEESVVKKILKQYQYVDLIFGTHNIHRLPYILHE 195

Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           A   K +V   +S E D  E L  V     RK  + A++ I  GCDKFCT+C+VPYTRG 
Sbjct: 196 AYMSKEMVVEVWSKEGDVVENLPKV-----RKGKIKAWVNIMYGCDKFCTYCIVPYTRGK 250

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR    ++ E R+L   G  EITLLGQNVNA  GK     + +  DL+  L +I  + 
Sbjct: 251 ERSRRPEDIIQEVRQLAAQGYKEITLLGQNVNA-YGKDFTDIQYSLGDLMDELRKID-IA 308

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHPRD  D LI+       L+ ++HLPVQSGS  ILK M R++T  EY +++ +
Sbjct: 309 RIRFTTSHPRDFDDRLIEVLAKRGNLVEHIHLPVQSGSTEILKMMGRKYTREEYLELVRK 368

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I++  PD+A+++D IVGFP ETD+ F  T+ L  ++ +  A++F YSPR GTP +NM + 
Sbjct: 369 IKAAIPDVALTTDIIVGFPNETDEQFEETLSLYREVEFDSAYTFIYSPREGTPAANMKDN 428

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVL 440
           V   VK ERL  L   ++E          GQ++EVL+E   K     L G +   + V  
Sbjct: 429 VPMEVKKERLKRLNDLVQEIAAKKMKQYEGQVVEVLVEGESKTNPDVLAGYTRKNKLVHF 488

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 IG ++ VRIT  K  TL GELV
Sbjct: 489 VGPKSLIGQLVNVRITQAKTWTLTGELV 516


>gi|167909625|ref|ZP_02496716.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia pseudomallei
           112]
          Length = 457

 Score =  477 bits (1228), Expect = e-132,   Method: Composition-based stats.
 Identities = 194/456 (42%), Positives = 291/456 (63%), Gaps = 18/456 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++ +VK++GCQMN YDS +M D+   ++G E+ ++ +DAD+I+ NTC +REKA EKV+
Sbjct: 1   MTKKVYVKTFGCQMNEYDSDKMVDVLNAAEGLEKTDTPEDADIILFNTCSVREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S LGR+R LK +      DLL+ V GCVA  EG  I+ R+P V++V GPQT +RLP++++
Sbjct: 61  SDLGRMRELKEA----KPDLLIGVGGCVASQEGASIVARAPYVDLVFGPQTLHRLPQMID 116

Query: 142 -RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
            R   G+  VD  +   +KF+ L        R  G +AF++I EGC K+C++CVVPYTRG
Sbjct: 117 ARRESGRAQVDITFPEIEKFDHLPPA-----RVEGPSAFVSIMEGCSKYCSYCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG--EKCTFSDLLYSLSEIK 258
            E+SR L  V+ E   L D GV E+TLLGQNVNA+RG    G  E   F+ L+  +++I 
Sbjct: 172 DEVSRPLDDVLTEVAGLADQGVREVTLLGQNVNAYRGAIAAGSAEIADFATLIEYVADIP 231

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           G+ R+RYTTSHP++ +  L+  +  +  L+ +LHLPVQ GSDRIL +M R +T  EY+ +
Sbjct: 232 GIERIRYTTSHPKEFTQRLLDVYAKVPKLVDHLHLPVQHGSDRILMAMKRGYTVLEYKSV 291

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           I ++R++RP++++S+D IVGFPGETD DF  TM LV ++ Y  +FSF YSPR GTP +N+
Sbjct: 292 IRKLRAIRPNLSLSTDIIVGFPGETDADFDKTMALVHEMSYDTSFSFIYSPRPGTPAANL 351

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQS 437
            +     +K +RL  LQ  + E     + + +G++  +L+E    K+  +L GR+   + 
Sbjct: 352 ADDTPRELKLKRLQHLQATIEENVARISQSMLGKVERILVEGPSRKDPNELAGRTENNRV 411

Query: 438 VVLNSK----NHNIGDIIKVRITDVKISTLYGELVV 469
           V   +        IG +I V+I      +L GELV+
Sbjct: 412 VNFPAPSAAHPRLIGQMIDVKINHAYPHSLRGELVL 447


>gi|296116295|ref|ZP_06834911.1| (dimethylallyl)adenosine tRNA methylthiotransferase
           [Gluconacetobacter hansenii ATCC 23769]
 gi|295977114|gb|EFG83876.1| (dimethylallyl)adenosine tRNA methylthiotransferase
           [Gluconacetobacter hansenii ATCC 23769]
          Length = 498

 Score =  477 bits (1228), Expect = e-132,   Method: Composition-based stats.
 Identities = 244/442 (55%), Positives = 317/442 (71%), Gaps = 4/442 (0%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
             V ++GCQMNVYDS RM D+    GYE V++ D AD+I+LNTCHIR++AAEKV+S LGR
Sbjct: 53  LHVITWGCQMNVYDSERMTDVLRPLGYEAVDAPDRADMIILNTCHIRDRAAEKVFSELGR 112

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           +R +K +R + G   ++ VAGCVAQAEG EIL R+P V++V+GPQTY+RLPE++ RA   
Sbjct: 113 LRLVKEARAQAGQQTVLAVAGCVAQAEGREILARAPYVDIVLGPQTYHRLPEMVARAARA 172

Query: 147 KR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
              V++TD+ VE KF+ L           G  AFLTIQEGCDKFC+FCVVPYTRG E SR
Sbjct: 173 AGAVIETDFPVEQKFDFLPPEREVPA---GGAAFLTIQEGCDKFCSFCVVPYTRGAEASR 229

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            ++ ++DEAR+L+ +GV EITLLGQNVNA+ G G DG     + L   L+   G+ R+RY
Sbjct: 230 PVAAIMDEARRLVAHGVREITLLGQNVNAYHGDGPDGTTWGLARLTAELAGQVGVERIRY 289

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
           TTSHPRDM D L+ AH +   LMP+LHLPVQSGSDR+L +MNR HTA EYR ++ R+R+ 
Sbjct: 290 TTSHPRDMDDGLVAAHREQPALMPFLHLPVQSGSDRVLAAMNRGHTAQEYRDLVARLRTA 349

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
           RPD+A+SSDFIVG PGETD+DF  TM L+  IG+AQA+SFKYSPR GTP SN   QV E+
Sbjct: 350 RPDLALSSDFIVGHPGETDEDFEQTMQLIRDIGFAQAYSFKYSPRPGTPASNAGAQVPED 409

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445
           VK  RL  LQ  LREQQ +FN A VGQ ++VL    G++ G++ G+SP+LQ+V +   + 
Sbjct: 410 VKDARLQRLQALLREQQDAFNAASVGQRVDVLFTGRGRKPGQISGKSPYLQAVHVEGPDS 469

Query: 446 NIGDIIKVRITDVKISTLYGEL 467
            IG + +V I  +  ++L G L
Sbjct: 470 LIGQVAEVDIVKLHTNSLGGVL 491


>gi|323495441|ref|ZP_08100518.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Vibrio
           brasiliensis LMG 20546]
 gi|323310364|gb|EGA63551.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Vibrio
           brasiliensis LMG 20546]
          Length = 474

 Score =  477 bits (1228), Expect = e-132,   Method: Composition-based stats.
 Identities = 197/449 (43%), Positives = 283/449 (63%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++  +K++GCQMN YDS +M D+   + GYE     ++AD+++LNTC IREKA EKV+
Sbjct: 1   MSKKLLIKTWGCQMNEYDSSKMADLLNAANGYELTEEPEEADVLLLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR + LK+ +      +   V    A  EG+ I  R+P V+V+ GPQT +RLPE+++
Sbjct: 61  HQLGRWKTLKDKKPGVVIGVGGCV----ATQEGDHIRERAPFVDVIFGPQTLHRLPEMIK 116

Query: 142 RARFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           +++  +  V+D  +   +KF+RL        R  G TAF++I EGC K+CT+CVVPYTRG
Sbjct: 117 QSQSDEAPVMDISFPEIEKFDRLP-----EPRAEGATAFVSIMEGCSKYCTYCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR +  V+ E  +L D GV E+ LLGQNVNA+RG   DG+ C+F++LL  ++ I G+
Sbjct: 172 EEVSRPMDDVLFEIAQLADQGVREVNLLGQNVNAYRGPMHDGDICSFAELLRLVASIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+TTSHP + +D +I  + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II 
Sbjct: 232 DRIRFTTSHPLEFTDDIIAVYEDTPELVSFLHLPVQSGSDRILTMMKRPHTAIEYKSIIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R  RPDI ISSDFIVGFPGET  D + TM L+  + +  +FSF +SPR GTP ++   
Sbjct: 292 KLRKARPDIQISSDFIVGFPGETAKDHQDTMKLIKDVDFDMSFSFIFSPRPGTPAADYPC 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439
            V E  K ERL  LQ+ +  Q + ++   +G    VL+E   K+   +L  R+   + V 
Sbjct: 352 DVPEQEKKERLYELQQTVNAQAMRYSRLMLGTEQRVLVEGPSKKNLMELRARTENNRVVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG  + V+ITDV  ++L GELV
Sbjct: 412 FEGNAELIGQFVDVKITDVFANSLRGELV 440


>gi|221211289|ref|ZP_03584268.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia multivorans
           CGD1]
 gi|221168650|gb|EEE01118.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia multivorans
           CGD1]
          Length = 457

 Score =  477 bits (1228), Expect = e-132,   Method: Composition-based stats.
 Identities = 197/456 (43%), Positives = 290/456 (63%), Gaps = 18/456 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++ +VK++GCQMN YDS +M D+   ++G E+ +S +DAD+I+ NTC +REKA EKV+
Sbjct: 1   MTKKVYVKTFGCQMNEYDSDKMVDVLNAAEGLEKTDSPEDADIILFNTCSVREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S LGR+R LK +      DLL+ V GCVA  EG  I+ R+P V++V GPQT +RLP++++
Sbjct: 61  SDLGRVRELKEA----KPDLLIGVGGCVASQEGASIVSRAPYVDLVFGPQTLHRLPQMID 116

Query: 142 RAR-FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
             R  G+  VD  +   +KF+ L        R  G TAF++I EGC K+C++CVVPYTRG
Sbjct: 117 ARRTSGRAQVDITFPEIEKFDHLPPA-----RVEGPTAFVSIMEGCSKYCSYCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG--EKCTFSDLLYSLSEIK 258
            E+SR L  V+ E   L D GV E+TLLGQNVNA+RG    G  E   F+ L+  +++I 
Sbjct: 172 DEVSRPLDDVLTEVAGLADQGVREVTLLGQNVNAYRGALTAGSSEVADFATLIEYVADIP 231

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           G+ R+RYTTSHP++ +  LI  +  +  L+ +LHLPVQ GSDRIL  M R +T  EY+ +
Sbjct: 232 GIERIRYTTSHPKEFTQRLIDTYAKVPKLVNHLHLPVQHGSDRILMVMKRGYTVLEYKSV 291

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           I ++R++RPD+++S+D IVGFPGET++DF   M LV  + Y  +FSF YSPR GTP +N+
Sbjct: 292 IRKLRAIRPDLSLSTDLIVGFPGETEEDFDKMMALVHDMRYDTSFSFIYSPRPGTPAANL 351

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQS 437
            +    +VK +RL  +Q  + E     + + VG++  +L+E    K+  +L GR+   + 
Sbjct: 352 HDDTPRDVKLKRLQLVQATIEENVARISQSMVGKVERILVEGPSRKDPNELAGRTENNRV 411

Query: 438 VVLNSK----NHNIGDIIKVRITDVKISTLYGELVV 469
           V   +        IG +I V+I      +L GELV+
Sbjct: 412 VNFPAPLAAHPRLIGQMIDVKINHAYPHSLRGELVL 447


>gi|241662041|ref|YP_002980401.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Ralstonia
           pickettii 12D]
 gi|240864068|gb|ACS61729.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Ralstonia pickettii 12D]
          Length = 456

 Score =  477 bits (1227), Expect = e-132,   Method: Composition-based stats.
 Identities = 204/454 (44%), Positives = 287/454 (63%), Gaps = 20/454 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ F+K+YGCQMN YDS +M D+   ++G    ++ +DAD+I+ NTC +REKA EKV+S 
Sbjct: 2   KKVFIKTYGCQMNEYDSDKMSDVLNAAEGLVPTDTPEDADVILFNTCSVREKAQEKVFSE 61

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE-R 142
           LGR++ LK        DL+V V GCVA  EG  I+ R+P V+VV GPQT +RLP+L+  R
Sbjct: 62  LGRVKALKA----LKPDLVVGVGGCVASQEGASIVARAPYVDVVFGPQTLHRLPDLIAAR 117

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            R G+  VD  +   +KF+ L        R  G +AF++I EGC K+C++CVVPYTRG E
Sbjct: 118 RRTGRSQVDVSFPEIEKFDHLPPA-----RVDGASAFVSIMEGCSKYCSYCVVPYTRGEE 172

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG-EKCTFSDLLYSLSEIKGLV 261
           +SR    V+ E   L + GV E+TLLGQNVNA+ GK  D  E+  F+ LL  ++EI G+ 
Sbjct: 173 VSRPFDDVLAEVAGLAEQGVREVTLLGQNVNAYIGKMGDTSERADFALLLEYVAEIPGIE 232

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+RYTTSHP++ S  LI+A+     L+ +LHLPVQ GSDRIL +M R +T  EY+  I +
Sbjct: 233 RIRYTTSHPKEFSSRLIEAYATNPKLVDHLHLPVQHGSDRILMAMKRGYTVLEYKSSIRK 292

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R++RP+I+I++DFIVGFPGETD DF  TMDL+ +IGY  +FSF YSPR GTP +N+ + 
Sbjct: 293 LRAIRPNISIATDFIVGFPGETDADFAKTMDLIHEIGYDTSFSFIYSPRPGTPAANLPDD 352

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVL 440
             + VK ERL  LQ  + E     +   VG +  +L+E    K+  +L GR+   + V  
Sbjct: 353 TPQAVKLERLKHLQATIEENVARISQGMVGSVQRILVEGPSRKDPTELHGRTENNRVVNF 412

Query: 441 NSKNH-------NIGDIIKVRITDVKISTLYGEL 467
              +         IG ++ VRI      +L GE+
Sbjct: 413 ALPDLPQARRDQLIGQMLDVRIVHAFPHSLRGEV 446


>gi|120597879|ref|YP_962453.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Shewanella sp.
           W3-18-1]
 gi|229890657|sp|A1RGV4|MIAB_SHESW RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|120557972|gb|ABM23899.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Shewanella sp. W3-18-1]
 gi|319427326|gb|ADV55400.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Shewanella putrefaciens
           200]
          Length = 474

 Score =  477 bits (1227), Expect = e-132,   Method: Composition-based stats.
 Identities = 195/449 (43%), Positives = 286/449 (63%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++  +K++GCQMN YDS +M D+    QGY       +AD+++LNTC IREKA EKV+
Sbjct: 1   MSKKLHIKTWGCQMNEYDSSKMADLLGEYQGYTLTEDASEADILLLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR + LK+       +L++ V GCVA  EG+ I  R+  V+++ GPQT +RLP+++E
Sbjct: 61  HQLGRWKTLKDK----NPNLIIGVGGCVASQEGKAIKDRAQCVDIIFGPQTLHRLPDMIE 116

Query: 142 RARFG-KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           + R G K V+D  +   +KF+RL        R  G TAF++I EGC K+C+FCVVPYTRG
Sbjct: 117 QVRRGDKAVIDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCSKYCSFCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR L  ++ E  +L + GV E+ LLGQNVNA+RG   DG  C+F++LL  ++ I G+
Sbjct: 172 EEVSRPLDDIILEIAQLAEQGVREVNLLGQNVNAYRGATHDGSICSFAELLRFVAAIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+TTSHP + +  +I  + D   L+ +LHLPVQSGSDRIL +M R H A EY+ II 
Sbjct: 232 DRIRFTTSHPIEFTQDIIDVYEDTPELVSFLHLPVQSGSDRILTAMKRGHMAIEYKSIIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           R+R  R  I ISSDFI+GFPGET +DF  TM L+++IG+  +FSF YS R GTP +++ +
Sbjct: 292 RLRKAREGIQISSDFIIGFPGETKEDFADTMKLIEEIGFDHSFSFIYSARPGTPAADLPD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVV 439
            VD   K +RL  LQ ++ +Q + ++   +G +  +L+E    K   +L GR+   + V 
Sbjct: 352 NVDMEEKKQRLAILQDRITQQAMRYSRHMMGTVQRILVEGPSVKNPMELRGRTENNRVVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                 +IG  + V I DV  ++L G+ +
Sbjct: 412 FEGLPKHIGTFVDVEIVDVYTNSLRGKFI 440


>gi|261211993|ref|ZP_05926279.1| tRNA-i(6)A37 methylthiotransferase [Vibrio sp. RC341]
 gi|260838601|gb|EEX65252.1| tRNA-i(6)A37 methylthiotransferase [Vibrio sp. RC341]
          Length = 474

 Score =  477 bits (1227), Expect = e-132,   Method: Composition-based stats.
 Identities = 197/449 (43%), Positives = 285/449 (63%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++  +K++GCQMN YDS +M D+   + GYE     ++AD+++LNTC IREKA EKV+
Sbjct: 1   MSKKLLIKTWGCQMNEYDSSKMADLLNAANGYELTEIPEEADVLLLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR + LK+ +      +   V    A  EG+ I  R+P V+V+ GPQT +RLPE+++
Sbjct: 61  HQLGRWKTLKDKKPGVVIGVGGCV----ATQEGDSIRDRAPYVDVIFGPQTLHRLPEMIK 116

Query: 142 RARF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           +++     V+D  +   +KF+RL        R  G TAF++I EGC K+CT+CVVPYTRG
Sbjct: 117 QSQTTDAPVMDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCSKYCTYCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR +  V+ E  +L + GV E+ LLGQNVNA+RG   DGE C+F++LL  ++ I G+
Sbjct: 172 EEVSRPMDDVLFEIAQLAEQGVREVNLLGQNVNAYRGATHDGEICSFAELLRLVATIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+TTSHP + +D +I  + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II 
Sbjct: 232 DRIRFTTSHPLEFTDDIIAVYEDTPELVSFLHLPVQSGSDRILTMMKRPHTAIEYKSIIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R  RPDI ISSDFIV FPGETD DF+ TM L+  + +  +FSF +SPR GTP ++   
Sbjct: 292 KLRKARPDIQISSDFIVAFPGETDKDFQDTMKLIRDVDFDMSFSFIFSPRPGTPAADYPC 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439
            + E VK ERL  LQ+++  Q + ++   +G    +L+E   K+   +L GR+   + V 
Sbjct: 352 DLPEEVKKERLYELQQQINSQAMRYSRLMLGTEQRILVEGPSKKDLMELRGRTENNRVVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG  + V+I DV  ++L GELV
Sbjct: 412 FEGSPELIGQFVDVKIVDVFANSLRGELV 440


>gi|83941259|ref|ZP_00953721.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Sulfitobacter sp. EE-36]
 gi|83847079|gb|EAP84954.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Sulfitobacter sp. EE-36]
          Length = 439

 Score =  477 bits (1227), Expect = e-132,   Method: Composition-based stats.
 Identities = 245/446 (54%), Positives = 315/446 (70%), Gaps = 9/446 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
            P++ F+K+YGCQMNVYDS RM +      Y    +  DAD+I+LNTCHIREKAAEKVYS
Sbjct: 3   APKKLFIKTYGCQMNVYDSERMAESLGDN-YVETKTAADADMILLNTCHIREKAAEKVYS 61

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            LGR++ LK        DL + VAGCVAQAEG EI+RR P V++VVGPQ+Y+RLP +  R
Sbjct: 62  ELGRLKPLKE----LNPDLKIGVAGCVAQAEGAEIMRRQPAVDLVVGPQSYHRLPAMEAR 117

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            R GK  +DTD+  EDKFE+L    G     R  +AFLT+QEGCDKFC FCVVPYTRG E
Sbjct: 118 VRSGKTALDTDFPEEDKFEKLK---GRGKATRAPSAFLTVQEGCDKFCAFCVVPYTRGAE 174

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR  ++V+ EAR+L++ GV E+TLLGQNVNA+ G G +G   T + L+  L++I GL R
Sbjct: 175 VSRPATRVLTEARELVERGVREVTLLGQNVNAYHGVGEEGADYTLARLIKELAKIDGLER 234

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +RYTTSHP DM D LI AHG++D LMPYLHLPVQSGSDRILK MNR HTA  Y ++I+RI
Sbjct: 235 IRYTTSHPNDMDDALIAAHGEIDKLMPYLHLPVQSGSDRILKRMNRSHTAESYLRLIERI 294

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+ RPDI +S DFIVGFP ETD DF ATM+LV ++ Y  A+SFKYS R GTP +    QV
Sbjct: 295 RAARPDIVMSGDFIVGFPEETDADFEATMELVREVKYGYAYSFKYSTRPGTPAAERP-QV 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
           +  +  ERL  LQ  +  QQ    ++ VG+ + VL+EK G+E G++VG+S +L SV ++ 
Sbjct: 354 EPAIADERLQRLQGLITGQQREIQNSMVGRDVSVLVEKAGREAGQMVGKSEYLHSVHIDE 413

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
               IGD+++VRI D K ++L    +
Sbjct: 414 AQAEIGDVVRVRIVDAKTNSLTARQI 439


>gi|28897507|ref|NP_797112.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|260363858|ref|ZP_05776610.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Vibrio parahaemolyticus
           K5030]
 gi|260898985|ref|ZP_05907426.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Vibrio parahaemolyticus
           Peru-466]
 gi|260900745|ref|ZP_05909140.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Vibrio parahaemolyticus
           AQ4037]
 gi|81728328|sp|Q87RP4|MIAB_VIBPA RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|28805719|dbj|BAC58996.1| conserved hypothetical protein [Vibrio parahaemolyticus RIMD
           2210633]
 gi|308087476|gb|EFO37171.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Vibrio parahaemolyticus
           Peru-466]
 gi|308108999|gb|EFO46539.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Vibrio parahaemolyticus
           AQ4037]
 gi|308114637|gb|EFO52177.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Vibrio parahaemolyticus
           K5030]
          Length = 474

 Score =  477 bits (1227), Expect = e-132,   Method: Composition-based stats.
 Identities = 198/449 (44%), Positives = 284/449 (63%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++  +K++GCQMN YDS +M D+   + GYE     ++AD+++LNTC IREKA EKV+
Sbjct: 1   MSKKLLIKTWGCQMNEYDSSKMADLLNAANGYELTEEPEEADVLLLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR + LK+ +      +   V    A  EG+ I  R+P V+V+ GPQT +RLPE+++
Sbjct: 61  HQLGRWKTLKDKKPGVVIGVGGCV----ATQEGDHIRERAPYVDVIFGPQTLHRLPEMIK 116

Query: 142 RARFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           +++     V+D  +   +KF+RL        R  G TAF++I EGC K+CT+CVVPYTRG
Sbjct: 117 QSQTDDAPVMDISFPEIEKFDRLP-----EPRAEGATAFVSIMEGCSKYCTYCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR +  V+ E  +L + GV E+ LLGQNVNA+RG   DGE C+F++LL  ++ I G+
Sbjct: 172 EEVSRPMDDVLFEIAQLAEQGVREVNLLGQNVNAYRGPMHDGEICSFAELLRLVASIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+TTSHP + +D +I  + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II 
Sbjct: 232 DRIRFTTSHPLEFTDDIIAVYEDTPELVSFLHLPVQSGSDRILTMMKRPHTAIEYKSIIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R  RPDI ISSDFIVGFPGETD DF+ TM L+  + +  +FSF +SPR GTP ++   
Sbjct: 292 KLRKARPDIQISSDFIVGFPGETDKDFQDTMKLIKDVDFDMSFSFIFSPRPGTPAADYPC 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439
            + E VK ERL  LQ+ +  Q + ++   +     VL+E   K+   +L  R+   + V 
Sbjct: 352 DIPEQVKKERLYELQQTINAQAMRYSRLMLATEQRVLVEGPSKKNLMELRARTENNRVVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG  + V+ITDV  ++L GELV
Sbjct: 412 FEGSADLIGQFVDVKITDVFANSLRGELV 440


>gi|254525252|ref|ZP_05137307.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Stenotrophomonas sp.
           SKA14]
 gi|219722843|gb|EED41368.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Stenotrophomonas sp.
           SKA14]
          Length = 442

 Score =  477 bits (1227), Expect = e-132,   Method: Composition-based stats.
 Identities = 203/450 (45%), Positives = 290/450 (64%), Gaps = 12/450 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           +  + ++K++GCQMN YDS +M D+  +  G E  +S DDAD+I++NTC IREKA EKV+
Sbjct: 1   MKGKLYIKTHGCQMNEYDSAKMADVLAASDGLELTDSPDDADVILVNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S LG  + LKN     G ++++ V GCVA  EGE I++R+P V++V GPQT +RLPEL+ 
Sbjct: 61  SQLGVWKGLKNK----GREVIIGVGGCVASQEGEAIIKRAPFVDLVFGPQTLHRLPELIR 116

Query: 142 RARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
             R  KR  VD  +   +KF+RL        R  G +AF++I EGC K+C+FCVVPYTRG
Sbjct: 117 ARREQKRPQVDISFPEIEKFDRLP-----EPRAEGASAFVSIMEGCSKYCSFCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR    VV E  +L   GV EI LLGQNVNA+RG   DGE      L+ +++EI G+
Sbjct: 172 TEVSRPFEDVVVEVAQLAAQGVREINLLGQNVNAYRGPYGDGEFADLGLLIRTIAEIDGV 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+TTSHP + SD LI A  D+  L  +LHLPVQ+GSDR+L +M R +TA E++  I 
Sbjct: 232 GRIRFTTSHPLEFSDSLIDAFRDVPQLANFLHLPVQAGSDRVLSAMKRGYTALEFKSKIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R+VRPDI+ISSDFIVGFPGETD DF  TM L++ IG+  +FSF YS R GTP +++ +
Sbjct: 292 KLRAVRPDISISSDFIVGFPGETDADFEKTMKLIEDIGFDHSFSFIYSRRPGTPAADLED 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439
            + +  K  RL  LQ+++       ++  VG +  VL+E   ++   +L G++  ++SV 
Sbjct: 352 TISDAEKHARLSRLQERINAHAAGISEKMVGTVQTVLVEGPSRKNPNELTGKTENMRSVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELVV 469
             +    IG  + V IT+   ++L   +V 
Sbjct: 412 FPAPARLIGQFVDVVITEALTNSLRARVVA 441


>gi|261855784|ref|YP_003263067.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Halothiobacillus
           neapolitanus c2]
 gi|261836253|gb|ACX96020.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Halothiobacillus
           neapolitanus c2]
          Length = 482

 Score =  477 bits (1227), Expect = e-132,   Method: Composition-based stats.
 Identities = 189/456 (41%), Positives = 283/456 (62%), Gaps = 12/456 (2%)

Query: 16  QIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQ-GYERVNSMDDADLIVLNTCHIRE 74
            +    +  ++  +K++GCQMN YDS +M D+  +  G+   +   +AD+++LNTC IRE
Sbjct: 18  PVSTPSMSGRKLHIKTWGCQMNEYDSSKMADVLGANSGFIATDDPAEADVLLLNTCSIRE 77

Query: 75  KAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYY 134
           KA EKV+S LG+ R LK        +L++ V GCVA  EG  I  R+P V++V GPQT +
Sbjct: 78  KAQEKVFSQLGQWRPLKEK----NPNLIIGVGGCVASQEGASIRTRAPYVDIVFGPQTLH 133

Query: 135 RLPELLERARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC 193
           RLPE++      ++ VVD  +   +KF+ L        R  G TAF++I EGC K+C+FC
Sbjct: 134 RLPEMVAAVEANRKPVVDISFPEIEKFDNLP-----APRAEGPTAFVSIMEGCSKYCSFC 188

Query: 194 VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS 253
           VVPYTRG EISR    V+ E  +L + GV E+ LLGQNVNA+RG   DG+    + L+  
Sbjct: 189 VVPYTRGEEISRPFDDVIAEVAELAEQGVREVNLLGQNVNAYRGVMHDGQIADLALLIEY 248

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
           ++ I  + R+R+TTSHP + +D LI+A+ ++  L  YLHLPVQ GSDRIL  M R HT  
Sbjct: 249 IARIDSIGRIRFTTSHPVEFTDRLIEAYRNVPKLAAYLHLPVQVGSDRILALMKRGHTVI 308

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
           EY+  + ++ + RP I++SSDFI+GFPGET++DF ATM LV  + +  +FSF YS R GT
Sbjct: 309 EYKAKLRKLMAARPGISLSSDFIIGFPGETEEDFEATMKLVTDMHFDHSFSFIYSARPGT 368

Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRS 432
           P +++ +   E VK  RL  LQ ++  Q+ + + A +  +  +L+     K+  +LVG++
Sbjct: 369 PAASLPDDQPEAVKKARLHRLQAQITAQEQAISQAMLDTVQTILVTGPSKKDPDELVGKT 428

Query: 433 PWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
              +SV+  ++    G  + VRIT+VK ++L  + V
Sbjct: 429 ENNRSVIFKARPELAGLFVDVRITEVKPNSLRADFV 464


>gi|300692456|ref|YP_003753451.1| isopentenyl-adenosine A37 tRNA methylthiolase, Fe-S protein
           [Ralstonia solanacearum PSI07]
 gi|299079516|emb|CBJ52194.1| isopentenyl-adenosine A37 tRNA methylthiolase, Fe-S protein
           [Ralstonia solanacearum PSI07]
          Length = 450

 Score =  477 bits (1227), Expect = e-132,   Method: Composition-based stats.
 Identities = 204/456 (44%), Positives = 289/456 (63%), Gaps = 20/456 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ F+K++GCQMN YDS +M D+   ++G    ++ +DAD+I+ NTC +REKA EKV+S 
Sbjct: 2   KKVFIKTFGCQMNEYDSDKMADVLNAAEGLVPTDTPEDADVILFNTCSVREKAQEKVFSD 61

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE-R 142
           LGR++ LK        DL+V V GCVA  EG  I+ R+P V+VV GPQT +RLPEL++ R
Sbjct: 62  LGRVKALKAR----NPDLVVGVGGCVASQEGASIVARAPYVDVVFGPQTLHRLPELIDAR 117

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            R G+  VD  +   +KF+ L        R  G +AF++I EGC K+C++CVVPYTRG E
Sbjct: 118 RRTGRPQVDVSFPEIEKFDHLPPA-----RVEGPSAFVSIMEGCSKYCSYCVVPYTRGEE 172

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG-EKCTFSDLLYSLSEIKGLV 261
           +SR    V+ E   L + GV E+TLLGQNVNA+ G+  D  E+  F+ LL  ++EI G+ 
Sbjct: 173 VSRPFEDVLAEVAGLAEQGVREVTLLGQNVNAYIGRMGDTSERADFALLLEYVAEIPGIE 232

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+RYTTSHP++ +  LI+A+     L+ +LHLPVQ GSDRIL +M R +T  EY+ II +
Sbjct: 233 RIRYTTSHPKEFTSRLIEAYATNRKLVDHLHLPVQHGSDRILMAMKRGYTVLEYKSIIRK 292

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R++RPDI+I++DFIVGFPGETD DF  TMDLV +IGY  +FSF YSPR GTP +N+ + 
Sbjct: 293 LRAIRPDISIATDFIVGFPGETDADFAKTMDLVHEIGYDNSFSFIYSPRPGTPAANLHDD 352

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVL 440
               VK ERL  LQ  +       ++  VG +  +L+E    K+  +L GR+   + V  
Sbjct: 353 TPHAVKLERLKHLQATIDANMARISEGMVGSVQRILVEGPSRKDPSELHGRTENNRVVNF 412

Query: 441 NSKNH-------NIGDIIKVRITDVKISTLYGELVV 469
              +         +G ++ VRI      +L GE+ V
Sbjct: 413 ALPDLPQARRDQLVGQMLDVRIVHAFPHSLRGEVAV 448


>gi|262190517|ref|ZP_06048761.1| tRNA-i(6)A37 methylthiotransferase [Vibrio cholerae CT 5369-93]
 gi|262033590|gb|EEY52084.1| tRNA-i(6)A37 methylthiotransferase [Vibrio cholerae CT 5369-93]
          Length = 474

 Score =  476 bits (1226), Expect = e-132,   Method: Composition-based stats.
 Identities = 196/449 (43%), Positives = 286/449 (63%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++  +K++GCQMN YDS +M D+   + GYE     ++AD+++LNTC IREKA EKV+
Sbjct: 1   MSKKLLIKTWGCQMNEYDSSKMADLLNAANGYELTEIPEEADVLLLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR + LK+ +      +   V    A  EG+ I  R+P V+V+ GPQT +RLPE+++
Sbjct: 61  HQLGRWKTLKDKKPGVVIGVGGCV----ATQEGDSIRDRAPYVDVIFGPQTLHRLPEMIK 116

Query: 142 RARFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           +++     V+D  +   +KF+RL        R  G TAF++I EGC K+CT+CVVPYTRG
Sbjct: 117 QSQTSDAPVMDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCSKYCTYCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR +  V+ E  +L + GV E+ LLGQNVNA+RG   DG  C+F++LL  ++ I G+
Sbjct: 172 EEVSRPMDDVLFEIAQLAEQGVREVNLLGQNVNAYRGATHDGGICSFAELLRLVATIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+TTSHP + +D +I  + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II 
Sbjct: 232 DRIRFTTSHPLEFTDDIIAVYEDTPELVSFLHLPVQSGSDRILTMMKRPHTAIEYKSIIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R  RPDI ISSDFIVGFPGETD DF+ TM L+  + +  +FSF +SPR GTP ++   
Sbjct: 292 KLRKARPDIQISSDFIVGFPGETDKDFQDTMKLIRDVDFDMSFSFIFSPRPGTPAADYPC 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439
           ++ E VK ERL  LQ+++  Q + ++   +G    +L+E   K+   +L GR+   + V 
Sbjct: 352 ELSEEVKKERLYELQQQINSQAMRYSRLMLGTEQRILVEGPSKKDLMELRGRTENNRVVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG  + V+I DV  ++L GEL+
Sbjct: 412 FEGSPDLIGQFVDVKIVDVFPNSLRGELL 440


>gi|167718182|ref|ZP_02401418.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia pseudomallei
           DM98]
          Length = 457

 Score =  476 bits (1226), Expect = e-132,   Method: Composition-based stats.
 Identities = 194/456 (42%), Positives = 291/456 (63%), Gaps = 18/456 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++ +VK++GCQMN YDS +M D+   ++G E+ ++ +DAD+I+ NTC +REKA EKV+
Sbjct: 1   MTKKVYVKTFGCQMNEYDSDKMVDVLNAAEGLEKTDTPEDADIILFNTCSVREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S LGR+R LK +      DLL+ V GCVA  EG  I+ R+P V++V GPQT +RLP++++
Sbjct: 61  SDLGRVRELKEA----KPDLLIGVGGCVASQEGASIVARAPYVDLVFGPQTLHRLPQMID 116

Query: 142 -RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
            R   G+  VD  +   +KF+ L        R  G +AF++I EGC K+C++CVVPYTRG
Sbjct: 117 ARRESGRAQVDITFPEIEKFDHLPPA-----RVEGPSAFVSIMEGCSKYCSYCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG--EKCTFSDLLYSLSEIK 258
            E+SR L  V+ E   L D GV E+TLLGQNVNA+RG    G  E   F+ L+  +++I 
Sbjct: 172 DEVSRPLDDVLTEVAGLADQGVREVTLLGQNVNAYRGAIAAGSAEIADFATLIEYVADIP 231

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           G+ R+RYTTSHP++ +  L+  +  +  L+ +LHLPVQ GSDRIL +M R +T  EY+ +
Sbjct: 232 GIERIRYTTSHPKEFTQRLLDVYAKVPKLVDHLHLPVQHGSDRILMAMKRGYTVLEYKSV 291

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           I ++R++RP++++S+D IVGFPGETD DF  TM LV ++ Y  +FSF YSPR GTP +N+
Sbjct: 292 IRKLRAIRPNLSLSTDIIVGFPGETDADFDKTMALVHEMSYDTSFSFIYSPRPGTPAANL 351

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQS 437
            +     +K +RL  LQ  + E     + + +G++  +L+E    K+  +L GR+   + 
Sbjct: 352 ADDTPRELKLKRLQHLQATIEENVARISQSMLGKVERILVEGPSRKDPNELAGRTENNRV 411

Query: 438 VVLNSK----NHNIGDIIKVRITDVKISTLYGELVV 469
           V   +        IG +I V+I      +L GELV+
Sbjct: 412 VNFPAPSAAHPRLIGQMIDVKINHAYPHSLRGELVL 447


>gi|307130060|ref|YP_003882076.1| isopentenyl-adenosine A37 tRNA methylthiolase [Dickeya dadantii
           3937]
 gi|306527589|gb|ADM97519.1| isopentenyl-adenosine A37 tRNA methylthiolase [Dickeya dadantii
           3937]
          Length = 474

 Score =  476 bits (1226), Expect = e-132,   Method: Composition-based stats.
 Identities = 194/449 (43%), Positives = 288/449 (64%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++  +K++GCQMN YDS ++ D+  S  GY+     ++AD+++LNTC IREKA EKV+
Sbjct: 1   MTKKLHIKTWGCQMNEYDSSKIADLLESTHGYQLTEVAEEADILLLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR + LK+       +L++ V GCVA  EGE I  R+  V+V+ GPQT +RLPE++ 
Sbjct: 61  HQLGRWKTLKD----VNPNLIIGVGGCVASQEGEHIRDRAHYVDVIFGPQTLHRLPEMIN 116

Query: 142 RARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
             +  +  +VD  +   +KF+RL        R  G TAF++I EGC+K+CTFCVVPYTRG
Sbjct: 117 HVQGTRSPIVDISFPEVEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTFCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR +  V+ E  +L   GV E+ LLGQNVNA+RG   + + C+F++LL  ++ I G+
Sbjct: 172 EEVSRPVDDVLFEIAQLAAQGVREVNLLGQNVNAYRGATHNDDICSFAELLRLVATIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+ TSHP + +D +I  + D   L+ +LHLPVQSGSDR+L  M RRHTA EY+ II 
Sbjct: 232 DRIRFITSHPIEFTDDIISVYEDTPELVSFLHLPVQSGSDRVLTMMKRRHTALEYKAIIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R+ RP I ISSDFIVGFPGET +DF  TM L+  + +  +FSF YSPR GTP ++M++
Sbjct: 292 KLRNARPAIQISSDFIVGFPGETQEDFEQTMKLIADVDFDMSFSFIYSPRPGTPAADMVD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439
            V E  K +RL  LQ+++ +Q + ++   +G +  +L+E   ++   +L GR+   + V 
Sbjct: 352 DVTEAEKKQRLYILQERINQQAMQYSRRMMGSVQRILVEGTSRKSVMELSGRTENNRVVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG  + V I DV  ++L G +V
Sbjct: 412 FEGTPDMIGKFVDVEIVDVYPNSLRGVVV 440


>gi|56419838|ref|YP_147156.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Geobacillus
           kaustophilus HTA426]
 gi|81347575|sp|Q5L0E8|MIAB_GEOKA RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|56379680|dbj|BAD75588.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
          Length = 531

 Score =  476 bits (1226), Expect = e-132,   Method: Composition-based stats.
 Identities = 183/448 (40%), Positives = 264/448 (58%), Gaps = 15/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++F++++YGCQMN +D+  M  +F + GYE  +  ++A++I+LNTC IRE A  KV+  L
Sbjct: 80  RKFYIRTYGCQMNEHDTEVMAGIFMALGYEPTDRPEEANVILLNTCAIRENAENKVFGEL 139

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G ++ LK        DLL+ V GC++Q E   ++IL++   V+++ G    +RLP +L  
Sbjct: 140 GYLKPLKT----TNPDLLLGVCGCMSQEESVVKKILKQYQYVDLIFGTHNIHRLPYILHE 195

Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           A   K +V   +S E D  E L  V     RK  + A++ I  GCDKFCT+C+VPYTRG 
Sbjct: 196 AYMSKEMVVEVWSKEGDVVENLPKV-----RKGKIKAWVNIMYGCDKFCTYCIVPYTRGK 250

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR    ++ E R+L   G  EITLLGQNVNA  GK     +    DL+  L +I  + 
Sbjct: 251 ERSRRPEDIIQEVRQLAAQGYKEITLLGQNVNA-YGKDFTDIQYGLGDLMDELRKID-IA 308

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHPRD  D LI+       L+ ++HLPVQSGS  ILK M R++T  EY +++ +
Sbjct: 309 RIRFTTSHPRDFDDRLIEVLAKRGNLVEHIHLPVQSGSTEILKMMGRKYTREEYLELVRK 368

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I++  PD+A+++D IVGFP ETD+ F  T+ L  ++ +  A++F YSPR GTP +NM + 
Sbjct: 369 IKAAIPDVALTTDIIVGFPNETDEQFEETLSLYREVEFDSAYTFIYSPREGTPAANMKDN 428

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVL 440
           V   VK ERL  L   ++E          GQ++EVL+E   K     L G +   + V  
Sbjct: 429 VPMEVKKERLKRLNDLVQEIAAKKMKQYEGQVVEVLVEGESKTNPDVLAGYTRKNKLVHF 488

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 IG ++ VRIT  K  TL GELV
Sbjct: 489 VGPKSLIGQLVNVRITQAKTWTLTGELV 516


>gi|53718317|ref|YP_107303.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Burkholderia
           pseudomallei K96243]
 gi|53724681|ref|YP_102060.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Burkholderia
           mallei ATCC 23344]
 gi|121600987|ref|YP_994016.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia mallei
           SAVP1]
 gi|124383869|ref|YP_001028320.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia mallei NCTC
           10229]
 gi|126439490|ref|YP_001057762.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia pseudomallei
           668]
 gi|126448080|ref|YP_001081964.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia mallei NCTC
           10247]
 gi|126453332|ref|YP_001065006.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia pseudomallei
           1106a]
 gi|134279698|ref|ZP_01766410.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia pseudomallei
           305]
 gi|167737215|ref|ZP_02409989.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia pseudomallei
           14]
 gi|167814345|ref|ZP_02446025.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia pseudomallei
           91]
 gi|167844396|ref|ZP_02469904.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia pseudomallei
           B7210]
 gi|167892910|ref|ZP_02480312.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia pseudomallei
           7894]
 gi|167901395|ref|ZP_02488600.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia pseudomallei
           NCTC 13177]
 gi|167917639|ref|ZP_02504730.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia pseudomallei
           BCC215]
 gi|217419549|ref|ZP_03451055.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia pseudomallei
           576]
 gi|237810913|ref|YP_002895364.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Burkholderia pseudomallei
           MSHR346]
 gi|238562538|ref|ZP_00440245.2| tRNA-I(6)A37 thiotransferase enzyme MiaB [Burkholderia mallei GB8
           horse 4]
 gi|242314327|ref|ZP_04813343.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia pseudomallei
           1106b]
 gi|254177145|ref|ZP_04883802.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia mallei ATCC
           10399]
 gi|254181739|ref|ZP_04888336.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia pseudomallei
           1655]
 gi|254187671|ref|ZP_04894183.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254196370|ref|ZP_04902794.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia pseudomallei
           S13]
 gi|254203744|ref|ZP_04910104.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia mallei FMH]
 gi|254208720|ref|ZP_04915068.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia mallei JHU]
 gi|254296218|ref|ZP_04963675.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia pseudomallei
           406e]
 gi|254360228|ref|ZP_04976498.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia mallei
           2002721280]
 gi|81380370|sp|Q63X63|MIAB_BURPS RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|81605634|sp|Q62MK8|MIAB_BURMA RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|229890460|sp|A3MNX8|MIAB_BURM7 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|229890461|sp|A2S8Q1|MIAB_BURM9 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|229890462|sp|A1V713|MIAB_BURMS RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|229890463|sp|A3NRN5|MIAB_BURP0 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|229890464|sp|A3N5Z1|MIAB_BURP6 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|52208731|emb|CAH34667.1| putative tRNA thiotransferase protein MiaB [Burkholderia
           pseudomallei K96243]
 gi|52428104|gb|AAU48697.1| tRNA-i(6)A37 modification enzyme MiaB [Burkholderia mallei ATCC
           23344]
 gi|121229797|gb|ABM52315.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia mallei
           SAVP1]
 gi|124291889|gb|ABN01158.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia mallei NCTC
           10229]
 gi|126218983|gb|ABN82489.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia pseudomallei
           668]
 gi|126226974|gb|ABN90514.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia pseudomallei
           1106a]
 gi|126240950|gb|ABO04043.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia mallei NCTC
           10247]
 gi|134248898|gb|EBA48980.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia pseudomallei
           305]
 gi|147745256|gb|EDK52336.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia mallei FMH]
 gi|147750596|gb|EDK57665.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia mallei JHU]
 gi|148029468|gb|EDK87373.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia mallei
           2002721280]
 gi|157806026|gb|EDO83196.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia pseudomallei
           406e]
 gi|157935351|gb|EDO91021.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia pseudomallei
           Pasteur 52237]
 gi|160698186|gb|EDP88156.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia mallei ATCC
           10399]
 gi|169653113|gb|EDS85806.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia pseudomallei
           S13]
 gi|184212277|gb|EDU09320.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia pseudomallei
           1655]
 gi|217396853|gb|EEC36869.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia pseudomallei
           576]
 gi|237505165|gb|ACQ97483.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Burkholderia pseudomallei
           MSHR346]
 gi|238522408|gb|EEP85852.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Burkholderia mallei GB8
           horse 4]
 gi|242137566|gb|EES23968.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia pseudomallei
           1106b]
          Length = 457

 Score =  476 bits (1226), Expect = e-132,   Method: Composition-based stats.
 Identities = 194/456 (42%), Positives = 291/456 (63%), Gaps = 18/456 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++ +VK++GCQMN YDS +M D+   ++G E+ ++ +DAD+I+ NTC +REKA EKV+
Sbjct: 1   MTKKVYVKTFGCQMNEYDSDKMVDVLNAAEGLEKTDTPEDADIILFNTCSVREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S LGR+R LK +      DLL+ V GCVA  EG  I+ R+P V++V GPQT +RLP++++
Sbjct: 61  SDLGRVRELKEA----KPDLLIGVGGCVASQEGASIVARAPYVDLVFGPQTLHRLPQMID 116

Query: 142 -RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
            R   G+  VD  +   +KF+ L        R  G +AF++I EGC K+C++CVVPYTRG
Sbjct: 117 ARRESGRAQVDITFPEIEKFDHLPPA-----RVEGPSAFVSIMEGCSKYCSYCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG--EKCTFSDLLYSLSEIK 258
            E+SR L  V+ E   L D GV E+TLLGQNVNA+RG    G  E   F+ L+  +++I 
Sbjct: 172 DEVSRPLDDVLTEVAGLADQGVREVTLLGQNVNAYRGAIAAGSAEIADFATLIEYVADIP 231

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           G+ R+RYTTSHP++ +  L+  +  +  L+ +LHLPVQ GSDRIL +M R +T  EY+ +
Sbjct: 232 GIERIRYTTSHPKEFTQRLLDVYAKVPKLVDHLHLPVQHGSDRILMAMKRGYTVLEYKSV 291

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           I ++R++RP++++S+D IVGFPGETD DF  TM LV ++ Y  +FSF YSPR GTP +N+
Sbjct: 292 IRKLRAIRPNLSLSTDIIVGFPGETDADFDKTMALVHEMSYDTSFSFIYSPRPGTPAANL 351

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQS 437
            +     +K +RL  LQ  + E     + + +G++  +L+E    K+  +L GR+   + 
Sbjct: 352 ADDTPRELKLKRLQHLQATIEENVARISQSMLGKVERILVEGPSRKDPNELAGRTENNRV 411

Query: 438 VVLNSK----NHNIGDIIKVRITDVKISTLYGELVV 469
           V   +        IG +I V+I      +L GELV+
Sbjct: 412 VNFPAPSAAHPRLIGQMIDVKINHAYPHSLRGELVL 447


>gi|239826699|ref|YP_002949323.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Geobacillus
           sp. WCH70]
 gi|239806992|gb|ACS24057.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Geobacillus sp. WCH70]
          Length = 523

 Score =  476 bits (1226), Expect = e-132,   Method: Composition-based stats.
 Identities = 179/448 (39%), Positives = 262/448 (58%), Gaps = 15/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++F++++YGCQMN +D+  M  +F + GYE  +  +DA++I+LNTC IRE A  KV+  +
Sbjct: 80  RKFYIRTYGCQMNEHDTEVMAGIFMALGYEPTDRPEDANVILLNTCAIRENAENKVFGEI 139

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G ++ LK +      DLL+ V GC++Q E    +IL++   V+++ G    +RLP +L  
Sbjct: 140 GHLKPLKQN----NPDLLLGVCGCMSQEESVVNKILKQYQYVDMIFGTHNIHRLPYILHE 195

Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           A   K +V   +S E D  E L        R+  + A++ I  GCDKFCT+C+VPYTRG 
Sbjct: 196 AYMSKEMVVEVWSKEGDVIENLP-----KARRGNIKAWVNIMYGCDKFCTYCIVPYTRGK 250

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR    ++ E R L   G  EITLLGQNVNA  GK     K    DL+  L +I  + 
Sbjct: 251 ERSRRPEDIIQEVRHLAAQGYKEITLLGQNVNA-YGKDFTDMKYGLGDLMDELRKID-IP 308

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHPRD  D LI+       L+ ++HLPVQSGS  ILK M R++T  EY +++ +
Sbjct: 309 RIRFTTSHPRDFDDRLIEVLAKRGNLVEHIHLPVQSGSTEILKLMGRKYTREEYLELVRK 368

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I+   PD+A+++D IVGFP ET++ F  T+ L  ++ +  A++F YSPR GTP + M++ 
Sbjct: 369 IKEAIPDVALTTDIIVGFPNETEEQFEETLSLYREVEFDSAYTFIYSPREGTPAAKMVDN 428

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVL 440
           V   VK ERL  L   + E          G+++EVL+E   K     L G +   + V  
Sbjct: 429 VPMEVKKERLQRLNALVNEISARKMKEYEGKVVEVLVEGESKNNPDVLAGYTRKNKLVNF 488

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 IG ++KVRIT+ K  TL GE+V
Sbjct: 489 IGPKSAIGKLVKVRITEAKTWTLNGEMV 516


>gi|301155952|emb|CBW15422.1| isopentenyl-adenosine A37 tRNA methylthiolase [Haemophilus
           parainfluenzae T3T1]
          Length = 461

 Score =  476 bits (1226), Expect = e-132,   Method: Composition-based stats.
 Identities = 201/436 (46%), Positives = 286/436 (65%), Gaps = 12/436 (2%)

Query: 36  MNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSR 94
           MN YDS +M D+  +  G E  +  ++AD+++LNTC IREKA EKV+  LGR + LK   
Sbjct: 1   MNEYDSSKMADLLLNTHGLELTDIPEEADVLLLNTCSIREKAQEKVFHQLGRWKELK--- 57

Query: 95  IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR-VVDTD 153
            K+  +L++ V GCVA  EGE I  R+P V++V GPQT +RLPE++ + R GK  VVD  
Sbjct: 58  -KQNPNLVIGVGGCVASQEGEHIRHRAPYVDIVFGPQTLHRLPEMINQIRGGKSSVVDVS 116

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           +   +KF+RL        R  G TAF++I EGC+K+CT+CVVPYTRG E+SR +  V+ E
Sbjct: 117 FPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTYCVVPYTRGEEVSRPVDDVLFE 171

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
             +L + GV EI LLGQNVNA+RG   DG  CTF++LL  ++ I G+ RLR+TTSHP + 
Sbjct: 172 IAQLAEQGVREINLLGQNVNAYRGPTFDGGICTFAELLRLVASIDGIDRLRFTTSHPIEF 231

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
           +D +I  + D   L+ ++HLPVQ+GSDRIL  M R HTA EY+ II ++R+VRP+I ISS
Sbjct: 232 TDDIIDVYRDTPELVDFVHLPVQAGSDRILTMMKRGHTALEYKSIIRKLRAVRPNIQISS 291

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLC 393
           DFIVGFPGET ++F  TM+L+ ++ +  +FSF YS R GTP ++M + V E  K +RL  
Sbjct: 292 DFIVGFPGETKEEFEQTMNLIAQVNFDMSFSFIYSARPGTPAADMPDDVTEEEKKQRLYL 351

Query: 394 LQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNSKNHNIGDIIK 452
           LQ+++ +Q   ++   +G    VL+E   K+   +L GR+   + V        IG  + 
Sbjct: 352 LQERINQQAAQYSRRMLGTEQRVLVEGPSKKDIMELTGRTENNRIVNFQGSPDMIGKFVD 411

Query: 453 VRITDVKISTLYGELV 468
           ++ITDV  ++L GE+V
Sbjct: 412 IKITDVYTNSLRGEVV 427


>gi|297581341|ref|ZP_06943265.1| conserved hypothetical protein [Vibrio cholerae RC385]
 gi|297534657|gb|EFH73494.1| conserved hypothetical protein [Vibrio cholerae RC385]
          Length = 474

 Score =  476 bits (1226), Expect = e-132,   Method: Composition-based stats.
 Identities = 196/449 (43%), Positives = 285/449 (63%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++  +K++GCQMN YDS +M D+  +  GYE     ++AD+++LNTC IREKA EKV+
Sbjct: 1   MSKKLLIKTWGCQMNEYDSSKMADLLNAVNGYELTEIPEEADVLLLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR + LK+ +      +   V    A  EG+ I  R+P V+V+ GPQT +RLPE+++
Sbjct: 61  HQLGRWKTLKDKKPGVVIGVGGCV----ATQEGDSIRDRAPYVDVIFGPQTLHRLPEMIK 116

Query: 142 RARFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           +++     V+D  +   +KF+RL        R  G TAF++I EGC K+CT+CVVPYTRG
Sbjct: 117 QSQTSDAPVMDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCSKYCTYCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR +  V+ E  +L + GV E+ LLGQNVNA+RG   DG  C+F++LL  ++ I G+
Sbjct: 172 EEVSRPMDDVLFEIAQLAEQGVREVNLLGQNVNAYRGATHDGGICSFAELLRLVATIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+TTSHP + +D +I  + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II 
Sbjct: 232 DRIRFTTSHPLEFTDDIIAVYEDTPELVSFLHLPVQSGSDRILTMMKRPHTAIEYKSIIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R  RPDI ISSDFIVGFPGETD DF+ TM L+  + +  +FSF +SPR GTP ++   
Sbjct: 292 KLRKARPDIQISSDFIVGFPGETDKDFQDTMKLIRDVDFDMSFSFIFSPRPGTPAADYPC 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439
            + E VK ERL  LQ+++  Q + ++   +G    +L+E   K+   +L GR+   + V 
Sbjct: 352 DLSEEVKKERLYELQQQINSQAMRYSRLMLGTEQRILVEGPSKKDLMELRGRTENNRVVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG  + V+I DV  ++L GEL+
Sbjct: 412 FEGSPDLIGQFVDVKIVDVFPNSLRGELL 440


>gi|330818257|ref|YP_004361962.1| 2-methylthioadenine synthetase [Burkholderia gladioli BSR3]
 gi|327370650|gb|AEA62006.1| 2-methylthioadenine synthetase [Burkholderia gladioli BSR3]
          Length = 457

 Score =  476 bits (1226), Expect = e-132,   Method: Composition-based stats.
 Identities = 197/456 (43%), Positives = 289/456 (63%), Gaps = 18/456 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++ ++K++GCQMN YDS +M D+   S+G  + +  +DAD+I+ NTC +REKA EKV+
Sbjct: 1   MTKKIYIKTFGCQMNEYDSDKMVDVLNASEGLVKTDRPEDADVILFNTCSVREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S LGR+R LK +      +L+V V GCVA  EG  I+ R+P V+VV GPQT +RLP++++
Sbjct: 61  SDLGRVRELKEA----NPNLIVGVGGCVASQEGAAIVARAPYVDVVFGPQTLHRLPQMID 116

Query: 142 RARF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
             R  G+  VD  +   +KF+ L        R  G +AF++I EGC K+C++CVVPYTRG
Sbjct: 117 ARRASGRSQVDISFPEIEKFDHLPPA-----RVEGPSAFVSIMEGCSKYCSYCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG--EKCTFSDLLYSLSEIK 258
            E+SR L  V+ E   L D GV E+TLLGQNVNA+RG    G  E   F+ L+  ++E+ 
Sbjct: 172 DEVSRPLDDVLTEIAGLADQGVREVTLLGQNVNAYRGALTQGSEEIADFATLIEYVAELP 231

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           G+ R+RYTTSHP++ S  L+  +  +  L+ +LHLPVQ GSDRIL +M R +T  EY+ +
Sbjct: 232 GIERIRYTTSHPKEFSQRLLDVYARVPKLVNHLHLPVQHGSDRILMAMKRGYTVLEYKSL 291

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           I ++R++RPD+++S+D I+GFPGET+ DF  TM LV ++ Y  +FSF YSPR GTP +N+
Sbjct: 292 IRKLRAIRPDLSLSTDIIIGFPGETEADFDKTMQLVHEMSYDTSFSFIYSPRPGTPAANL 351

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQS 437
            +     VK +RL  LQ  + E     + + VG+I  +L+E    K+  +L GR+   + 
Sbjct: 352 HDDTPREVKLKRLQHLQATIEENVARISASMVGRIERILVEGPSRKDPNELAGRTENNRV 411

Query: 438 VVLNSK----NHNIGDIIKVRITDVKISTLYGELVV 469
           V   +        IG +I VRI      +L GELV+
Sbjct: 412 VNFPAPLASHARLIGQMIDVRINHAYPHSLRGELVL 447


>gi|297530521|ref|YP_003671796.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Geobacillus sp. C56-T3]
 gi|297253773|gb|ADI27219.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Geobacillus sp. C56-T3]
          Length = 531

 Score =  476 bits (1226), Expect = e-132,   Method: Composition-based stats.
 Identities = 183/448 (40%), Positives = 264/448 (58%), Gaps = 15/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++F++++YGCQMN +D+  M  +F + GYE  +  ++A++I+LNTC IRE A  KV+  L
Sbjct: 80  RKFYIRTYGCQMNEHDTEVMAGIFMALGYEPTDRPEEANVILLNTCAIRENAENKVFGEL 139

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G ++ LK        DLL+ V GC++Q E   ++IL++   V+++ G    +RLP +L  
Sbjct: 140 GYLKPLKT----TNPDLLLGVCGCMSQEESVVKKILKQYQYVDLIFGTHNIHRLPYILHE 195

Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           A   K +V   +S E D  E L  V     RK  + A++ I  GCDKFCT+C+VPYTRG 
Sbjct: 196 AYMSKEMVVEVWSKEGDVVENLPKV-----RKGKIKAWVNIMYGCDKFCTYCIVPYTRGK 250

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR    ++ E R+L   G  EITLLGQNVNA  GK     +    DL+  L +I  + 
Sbjct: 251 ERSRRPEDIIQEVRQLAAQGYKEITLLGQNVNA-YGKDFTDIQYGLGDLMDELRKID-IA 308

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHPRD  D LI+       L+ ++HLPVQSGS  ILK M R++T  EY +++ +
Sbjct: 309 RIRFTTSHPRDFDDRLIEVLAKRGNLVEHIHLPVQSGSTEILKMMGRKYTREEYLELVRK 368

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I++  PD+A+++D IVGFP ETD+ F  T+ L  ++ +  A++F YSPR GTP +NM + 
Sbjct: 369 IKAAIPDVALTTDIIVGFPNETDEQFEETLSLYREVEFDSAYTFIYSPREGTPAANMKDN 428

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVL 440
           V   VK ERL  L   ++E          GQ++EVL+E   K     L G +   + V  
Sbjct: 429 VPMEVKKERLKRLNDLVQEIAAKKMKQYEGQVVEVLVEGESKTNPDVLAGYTRKNKLVHF 488

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 IG ++ VRIT  K  TL GELV
Sbjct: 489 VGPKSLIGQLVNVRITQAKTWTLTGELV 516


>gi|254251467|ref|ZP_04944785.1| 2-methylthioadenine synthetase [Burkholderia dolosa AUO158]
 gi|124894076|gb|EAY67956.1| 2-methylthioadenine synthetase [Burkholderia dolosa AUO158]
          Length = 457

 Score =  476 bits (1226), Expect = e-132,   Method: Composition-based stats.
 Identities = 198/456 (43%), Positives = 291/456 (63%), Gaps = 18/456 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++ +VK++GCQMN YDS +M D+   ++G E+ ++ +DAD+I+ NTC +REKA EKV+
Sbjct: 1   MTKKVYVKTFGCQMNEYDSDKMVDVLNAAEGLEKTDTPEDADIILFNTCSVREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S LGR+R LK +      DLL+ V GCVA  EG  I+ R+P V++V GPQT +RLP++++
Sbjct: 61  SDLGRVRELKEA----KPDLLIGVGGCVASQEGASIVSRAPYVDLVFGPQTLHRLPQMID 116

Query: 142 RAR-FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
             R  G+  VD  +   +KF+ L        R  G TAF++I EGC K+C++CVVPYTRG
Sbjct: 117 ARRTSGRAQVDITFPEIEKFDHLPPA-----RVEGPTAFVSIMEGCSKYCSYCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG--EKCTFSDLLYSLSEIK 258
            E+SR L  V+ E   L D GV E+TLLGQNVNA+RG    G  E   F+ L+  +++I 
Sbjct: 172 DEVSRPLDDVLTEIAGLADQGVREVTLLGQNVNAYRGALTAGSSEIADFATLIEYVADIP 231

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           G+ R+RYTTSHP++ +  LI  +  +  L+ +LHLPVQ GSDRIL +M R +T  EY+ +
Sbjct: 232 GIERIRYTTSHPKEFTQRLIDTYAKVPKLVNHLHLPVQHGSDRILMAMKRGYTVLEYKSV 291

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           I ++R++RPD+++S+D IVGFPGETDDDF   M LV  + Y  +FSF YSPR GTP +N+
Sbjct: 292 IRKLRAIRPDLSLSTDLIVGFPGETDDDFDKMMALVHDMRYDTSFSFIYSPRPGTPAANL 351

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQS 437
            +    +VK +RL  LQ  + E     + + VG++  +L+E    K+  +L GR+   + 
Sbjct: 352 HDDTPRDVKLKRLQHLQATIEENVARISRSMVGKVERILVEGPSRKDPNELAGRTENNRV 411

Query: 438 VVLNSK----NHNIGDIIKVRITDVKISTLYGELVV 469
           V   +        IG +I V+I      +L GEL++
Sbjct: 412 VNFPAPLASHPRLIGQMIDVKINHAYPHSLRGELLL 447


>gi|241764105|ref|ZP_04762142.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Acidovorax delafieldii
           2AN]
 gi|241366569|gb|EER61057.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Acidovorax delafieldii
           2AN]
          Length = 447

 Score =  476 bits (1226), Expect = e-132,   Method: Composition-based stats.
 Identities = 205/451 (45%), Positives = 292/451 (64%), Gaps = 15/451 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++ F+K++GCQMN YDS +M D+   +QGYE   ++D+ADLI+ NTC +REKA EKV+
Sbjct: 1   MAKKVFIKTFGCQMNEYDSDKMVDVLGAAQGYEPTQNVDEADLILFNTCSVREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL- 140
           S LGRI++LK   +K      + V GCVA  EG EI++R+P V+VV GPQT +RLPE+L 
Sbjct: 61  SDLGRIKHLKARGVK------IGVGGCVASQEGAEIIKRAPYVDVVFGPQTLHRLPEMLN 114

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           +R R  K  VD  +   +KF+ L        R  G +AF++I EGC K+C++CVVPYTRG
Sbjct: 115 QRERMDKPQVDISFPEIEKFDHLPPA-----RVEGASAFVSIMEGCSKYCSYCVVPYTRG 169

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-GLDGEKCTFSDLLYSLSEIKG 259
            E+SR    V+ E   L D GV EITLLGQNVNA+ GK G   E   F+ LL  +S+I G
Sbjct: 170 EEVSRPFDDVLVEVAGLADQGVKEITLLGQNVNAYLGKMGGTTEIADFALLLEYVSDIPG 229

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           + R+RYTTSHP + +  LI+A+  L  L  +LHLPVQ GSDRIL +M R +TA EY+  +
Sbjct: 230 IERIRYTTSHPNEFTPRLIEAYVKLPKLASHLHLPVQHGSDRILMAMKRGYTAMEYKSTV 289

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            ++R++RPD+A+SSDFIVGFPGE++DDF   M L+D I +  +FSF +SPR GTP + + 
Sbjct: 290 RKLRAIRPDLAMSSDFIVGFPGESEDDFNKMMKLIDDIHFDNSFSFIFSPRPGTPAAGLH 349

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLVGRSPWLQSV 438
           +    +VK  RL  LQ  +     S +++ VG +  +L+E   K    +L+GR+   + V
Sbjct: 350 DDTPHDVKLRRLQHLQSVINANIKSISESRVGTVQRILVEGASKRDSTELMGRTECNRVV 409

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
               +   +G ++ V IT+ K  TL G+++ 
Sbjct: 410 NFVGQPRLVGQMVDVTITEAKAYTLRGKVLT 440


>gi|253687591|ref|YP_003016781.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Pectobacterium
           carotovorum subsp. carotovorum PC1]
 gi|251754169|gb|ACT12245.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Pectobacterium
           carotovorum subsp. carotovorum PC1]
          Length = 474

 Score =  476 bits (1226), Expect = e-132,   Method: Composition-based stats.
 Identities = 197/449 (43%), Positives = 286/449 (63%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++  +K++GCQMN YDS +M D+  S  GYE     ++AD+++LNTC IREKA EKV+
Sbjct: 1   MTKKLLIKTWGCQMNEYDSSKMADLLGSTHGYELTEIAEEADVLLLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR + LK+       +L++ V GCVA  EG  I  R+  V+V+ GPQT +RLPE++ 
Sbjct: 61  HQLGRWKALKD----LNPNLIIGVGGCVASQEGAHIRERAHYVDVIFGPQTLHRLPEMIN 116

Query: 142 RARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
             +  +  +VD  +   +KF+RL        R  G TAF++I EGC+K+CTFCVVPYTRG
Sbjct: 117 HVQGTRSPIVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTFCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR    V+ E  +L   GV E+ LLGQNVNA+RG+  DGE C+F++LL  ++ I G+
Sbjct: 172 EEVSRPCDDVLFEIAQLAAQGVREVNLLGQNVNAYRGETYDGEICSFAELLRLVAAIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+TTSHP + +D +I  + D   L+ +LHLPVQSGSDR+L  M RRHTA EY+ II 
Sbjct: 232 DRIRFTTSHPIEFTDDIISVYEDTPELVSFLHLPVQSGSDRVLTMMKRRHTALEYKAIIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++ + RP I ISSDFIVGFPGET  DF  TM L+  + +  ++SF YS R GTP ++M++
Sbjct: 292 KLHNARPGILISSDFIVGFPGETQADFEQTMKLIADVNFDMSYSFVYSARPGTPAADMVD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439
            V E  K +RL  LQ+++ +Q + F+   +G +  +L+E   ++   +L GR+   + V 
Sbjct: 352 DVPEEEKKQRLYLLQERITQQAMRFSRLMLGTVQRILVEGTSRKSVMELSGRTENNRVVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG  + V I DV  ++L G +V
Sbjct: 412 FEGTPDMIGKFVDVEIVDVYTNSLRGIVV 440


>gi|226330999|ref|ZP_03806517.1| hypothetical protein PROPEN_04929 [Proteus penneri ATCC 35198]
 gi|225201794|gb|EEG84148.1| hypothetical protein PROPEN_04929 [Proteus penneri ATCC 35198]
          Length = 476

 Score =  476 bits (1226), Expect = e-132,   Method: Composition-based stats.
 Identities = 196/447 (43%), Positives = 292/447 (65%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ ++K++GCQMN YDS +M D+  S  GY+  +  +DAD+++LNTC IREKA EKV+  
Sbjct: 5   KKLYIKTWGCQMNEYDSSKMADLLESTHGYQLTDVAEDADILLLNTCSIREKAQEKVFHQ 64

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR +  K++      D+++ V GCVA  EGE I +R+  V+++ GPQT +RLPE++ + 
Sbjct: 65  LGRWKYFKDN----KPDIIIGVGGCVASQEGEYIRQRAQCVDIIFGPQTLHRLPEMINQV 120

Query: 144 RFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           +  K  VVD  +   +KF+RL        R  G +AF++I EGC+K+C+FCVVPYTRG E
Sbjct: 121 KGTKSPVVDISFPEIEKFDRLP-----EPRAEGPSAFVSIMEGCNKYCSFCVVPYTRGEE 175

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR    V+ E  +L   GV E+ LLGQNVNA+RG   DG+ C+F++L+  ++ I G+ R
Sbjct: 176 VSRPCDDVLFEIAQLAAQGVREVNLLGQNVNAYRGATFDGQICSFAELIRLVAAIDGIDR 235

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP + +D ++  + D   L+ YLHLPVQSGSDRIL  M R HTA EY+ II ++
Sbjct: 236 IRFTTSHPIEFTDDIVAVYEDTPELVSYLHLPVQSGSDRILTLMKRNHTALEYKSIIRKL 295

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R  RPDI ISSDFI+GFPGET DDF  TM L+  + +  +FSF YS R GTP +++ + V
Sbjct: 296 RKARPDILISSDFIIGFPGETQDDFEKTMQLIADVNFDMSFSFIYSARPGTPAADLPDDV 355

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441
            E+ K +RL  LQ+++ +Q ++F+ A +  +  +L+E   ++   +L GR+   + V   
Sbjct: 356 SEDEKKQRLYLLQQRINQQAMNFSRAMLNSVQRILVEGPSRKNVMELSGRTENNRVVNFE 415

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                IG  + V I DV  ++L G++V
Sbjct: 416 GTPDMIGKFVDVEIVDVYANSLRGKVV 442


>gi|152976138|ref|YP_001375655.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|229890423|sp|A7GRA2|MIAB_BACCN RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|152024890|gb|ABS22660.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cytotoxicus NVH
           391-98]
          Length = 509

 Score =  476 bits (1225), Expect = e-132,   Method: Composition-based stats.
 Identities = 183/448 (40%), Positives = 267/448 (59%), Gaps = 15/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++F++++YGCQMN +D+  M  +F + GYE   + +DAD+I+LNTC IRE A  KV+  L
Sbjct: 66  RKFYIRTYGCQMNEHDTEVMAGIFTTLGYEPTFTTEDADVILLNTCAIRENAENKVFGEL 125

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G ++ LK        DLL+ V GC++Q E    +I+++   V++V G    +RLP +L+ 
Sbjct: 126 GHLKPLKQK----NPDLLIGVCGCMSQEESVVNKIMQKHQHVDMVFGTHNIHRLPYILKD 181

Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           A F K  V   +S E D  E L  V     R+  + A++ I  GCDKFCT+C+VPYTRG 
Sbjct: 182 AMFSKATVVEVWSKEGDVIENLPKV-----RRGDIKAWVNIMYGCDKFCTYCIVPYTRGK 236

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR    ++ E R L  NG  EITLLGQNVNA  GK  D  +    DL+  L +I  + 
Sbjct: 237 ERSRRPEDIIKEVRHLAANGYKEITLLGQNVNA-YGKDFDDLEYGLGDLMDELRKID-IA 294

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHPRD  D LI+  G    L+ ++HLPVQSGS  +LK M R++T  +Y +++ +
Sbjct: 295 RIRFTTSHPRDFDDHLIEVLGKGGNLVEHIHLPVQSGSTDMLKIMARKYTREQYLELVRK 354

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I+   P++ +++D IVGFP ETD+ F  T+ L  ++ +  AF+F YSPR GTP + M + 
Sbjct: 355 IKKTIPNVVLTTDIIVGFPNETDEQFEETLSLYREVEFDSAFTFIYSPREGTPAAKMKDN 414

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVL 440
           +   VK ERL  L + + E     N    GQI+EVL++   K     L G +   + V  
Sbjct: 415 IPMEVKKERLQRLNELVNEFSAKKNKKYEGQIVEVLVDGESKNNPDVLAGYTRTNKLVNF 474

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
            +    IG ++KV+IT+ K  +L GELV
Sbjct: 475 VAPKSVIGQLVKVKITEAKTWSLNGELV 502


>gi|254490396|ref|ZP_05103585.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Methylophaga thiooxidans
           DMS010]
 gi|224464529|gb|EEF80789.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Methylophaga thiooxydans
           DMS010]
          Length = 446

 Score =  476 bits (1225), Expect = e-132,   Method: Composition-based stats.
 Identities = 188/447 (42%), Positives = 289/447 (64%), Gaps = 12/447 (2%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + +++++GCQMN YDS +M ++   S   E  +  ++AD+++LNTC IREKA EKV+  L
Sbjct: 4   KLYIRTFGCQMNEYDSSKMAEVLADSHQLEPTDIPEEADVLLLNTCSIREKAQEKVFHQL 63

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR +  K+SR     +L++ V GCVA  EGE I +R+P V+++ GPQT +RLP +LE  +
Sbjct: 64  GRWKRWKDSR----PNLVIGVGGCVASQEGEAIRKRAPYVDLIFGPQTLHRLPAMLEEVK 119

Query: 145 FGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             ++  +D  +   +KF+ L        R  G TAF++I EGC K+CTFCVVPYTRG E+
Sbjct: 120 ISRKPSIDISFPEIEKFDNLP-----APRADGPTAFVSIMEGCSKYCTFCVVPYTRGEEV 174

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR +  ++ E R+L   GV E+ LLGQNVNA++G+  + E    + L++ ++ I+G+ R+
Sbjct: 175 SRPVGPILREIRQLAAQGVREVNLLGQNVNAYQGEIDEDETADLALLIHYVAAIEGIERI 234

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+TTSHP + SD LI+A  ++  L+ +LHLPVQSGSDRIL  M R HTA +Y + I R++
Sbjct: 235 RFTTSHPVEFSDSLIEAFAEVPELVNHLHLPVQSGSDRILTMMKRGHTAKQYLEKIRRLK 294

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
            +RP++++SSDFI+GFP ET+ DF+ATMDL++++ +  +FSF YS R GTP +  ++ V 
Sbjct: 295 EIRPELSMSSDFIIGFPNETEADFQATMDLINEVEFDHSFSFIYSARPGTPAAAFVDSVP 354

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVLNS 442
           E+VK ERL  +Q +L E +     + VG    +L+E+      + + GR+   + V    
Sbjct: 355 EDVKKERLQIMQSRLWELEQMHAQSMVGTTQRILVERAAHRGDEDMAGRTENNRVVNFQG 414

Query: 443 KNHNIGDIIKVRITDVKISTLYGELVV 469
               IG  + VRI +   ++L GEL+ 
Sbjct: 415 DESLIGQFVDVRIEEAFSNSLRGELLT 441


>gi|91787018|ref|YP_547970.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Polaromonas
           sp. JS666]
 gi|123355998|sp|Q12EH0|MIAB_POLSJ RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|91696243|gb|ABE43072.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Polaromonas sp. JS666]
          Length = 447

 Score =  476 bits (1225), Expect = e-132,   Method: Composition-based stats.
 Identities = 202/451 (44%), Positives = 290/451 (64%), Gaps = 15/451 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++ F+K++GCQMN YDS +M D+   ++GYE   ++D+ADLI+ NTC +REKA EKV+
Sbjct: 1   MSKKVFIKTFGCQMNEYDSDKMSDVLHAAEGYEPTQNVDEADLILFNTCSVREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL- 140
           S LGR+++LK         +L+ V GCVA  EG  I++R+P V+VV GPQT +RLP+LL 
Sbjct: 61  SDLGRVKHLKEK------GVLIGVGGCVASQEGAAIIQRAPYVDVVFGPQTLHRLPDLLA 114

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           +RAR  K  VD  +   +KF+ L        R  G +AF++I EGC K+C++CVVPYTRG
Sbjct: 115 KRARLNKPQVDISFPEIEKFDHLPPA-----RVEGASAFVSIMEGCSKYCSYCVVPYTRG 169

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG-EKCTFSDLLYSLSEIKG 259
            E+SR    V+ E   L D GV E+TLLGQNVNA+RG   D  E   F+ LL  +S+I G
Sbjct: 170 EEVSRPFDDVLVEVAGLADQGVKEVTLLGQNVNAYRGPMGDTAEIADFATLLEYVSDIPG 229

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           + R+RY TSHP + +  LI A+  L  L+ +LHLPVQ GSDRIL +M R +TA EY+  I
Sbjct: 230 IERIRYVTSHPNEFTQSLIDAYARLPKLVNHLHLPVQHGSDRILMAMKRGYTAMEYKSTI 289

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            ++R++RPD+A+SSDFIVGFPGET+DDF   M L+D +GY  +FSF YSPR GTP + + 
Sbjct: 290 RKLRAIRPDLAMSSDFIVGFPGETEDDFNKMMKLIDDVGYDTSFSFIYSPRPGTPAAALH 349

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSV 438
           +     VK  RL  LQ  + +   + + + +G +  +L+E    K+  +L+GR+   + V
Sbjct: 350 DDTPHEVKLRRLQHLQATIDDSVRAISASRLGTVQRILVEGASRKDPTELMGRTECNRVV 409

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
               +   IG ++ + IT     +L GE++ 
Sbjct: 410 NFKGQPRLIGQMVDITITQATQRSLRGEVLT 440


>gi|212639354|ref|YP_002315874.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Anoxybacillus
           flavithermus WK1]
 gi|229890441|sp|B7GJM6|MIAB_ANOFW RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|212560834|gb|ACJ33889.1| 2-methylthioadenine synthetase [Anoxybacillus flavithermus WK1]
          Length = 527

 Score =  476 bits (1225), Expect = e-132,   Method: Composition-based stats.
 Identities = 180/448 (40%), Positives = 262/448 (58%), Gaps = 15/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++F++++YGCQMN +D+  M  +F + GYE  +  +DA++I+LNTC IRE A  KV+  +
Sbjct: 84  RKFYIRTYGCQMNEHDTEVMAGIFMALGYEPTDRPEDANVILLNTCAIRENAENKVFGEI 143

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G ++ LK +      DLL+ V GC++Q E    +IL++   V+++ G    +RLP +L+ 
Sbjct: 144 GHLKPLKQN----NPDLLLGVCGCMSQEESVVNKILKQFQYVDMIFGTHNIHRLPYILKE 199

Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           A   K +V   +S E D  E L  V     RK  + A++ I  GCDKFCT+C+VPYTRG 
Sbjct: 200 AYMSKEMVVEVWSKEGDVIENLPKV-----RKGNIKAWVNIMYGCDKFCTYCIVPYTRGK 254

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR    ++ E R L   G  EITLLGQNVNA  GK     K    DL+  L +I  + 
Sbjct: 255 ERSRRPEDIIQEVRHLAAQGYKEITLLGQNVNA-YGKDFTDMKYGLGDLMDELRKID-IP 312

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHPRD  D LI+       L+ ++HLPVQSGS  +LK M R++T  +Y +++ +
Sbjct: 313 RIRFTTSHPRDFDDRLIEVLAKGGNLVEHIHLPVQSGSSEVLKMMARKYTREQYLELVRK 372

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I+   P +A+++D IVGFP ETD+ F  T+ L  ++ +  AF+F YSPR GTP + M++ 
Sbjct: 373 IKEAIPGVALTTDIIVGFPNETDEQFEETLSLYREVEFDSAFTFIYSPREGTPAAKMVDN 432

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVL 440
           V   VK ERL  L   + E          GQ++EVL+E   K     L G +   + V  
Sbjct: 433 VPMEVKKERLQRLNALVNEISAKKMKEYEGQVVEVLVEGESKNNPDVLAGYTRKNKLVNF 492

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 IG ++ VRIT+ K  TL GE+V
Sbjct: 493 VGPKSAIGQLVNVRITEAKTWTLNGEMV 520


>gi|27363745|ref|NP_759273.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Vibrio
           vulnificus CMCP6]
 gi|81449180|sp|Q8DFE8|MIAB_VIBVU RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|27359861|gb|AAO08800.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Vibrio vulnificus CMCP6]
          Length = 474

 Score =  476 bits (1225), Expect = e-132,   Method: Composition-based stats.
 Identities = 194/449 (43%), Positives = 283/449 (63%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++  +K++GCQMN YDS +M D+   + GYE     ++AD+++LNTC IREKA EKV+
Sbjct: 1   MSKKLLIKTWGCQMNEYDSSKMADLLNAANGYELTEEPEEADVLLLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR + LK+ +      +   V    A  EG+ I  R+P V+V+ GPQT +RLPE+++
Sbjct: 61  HQLGRWKTLKDKKPGVVIGVGGCV----ATQEGDHIRERAPFVDVIFGPQTLHRLPEMIK 116

Query: 142 RARFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           +++     V+D  +   +KF+ L        R  G TAF++I EGC K+CT+CVVPYTRG
Sbjct: 117 QSQSEDAPVMDISFPEIEKFDSLP-----EPRAEGATAFVSIMEGCSKYCTYCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR +  V+ E  +L + GV E+ LLGQNVNA+RG   DGE C+F++LL  ++ I G+
Sbjct: 172 EEVSRPMDDVLYEIAQLAEQGVREVNLLGQNVNAYRGPTHDGEICSFAELLRLVASIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+TTSHP + +D +I  + D   L+ +LHLPVQSGSDRIL  M R HT  EY+ II 
Sbjct: 232 DRIRFTTSHPLEFTDDIIAVYEDTPELVSFLHLPVQSGSDRILTMMKRPHTGIEYKSIIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R  RPDI ISSDFIVGFPGE+D DF+ TM L+  + +  +FSF +SPR GTP ++   
Sbjct: 292 KLRKARPDIQISSDFIVGFPGESDKDFQDTMKLIKDVDFDMSFSFIFSPRPGTPAADYPC 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439
            + E  K ERL  LQ+++  Q + ++   +G    VL+E   K+   +L  R+   + V 
Sbjct: 352 DLSEETKKERLYELQQQINAQAMRYSRLMLGTEQRVLVEGPSKKNLMELRARTENNRVVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG  + V+ITDV  ++L GE+V
Sbjct: 412 FEGSADLIGQFVDVKITDVFANSLRGEIV 440


>gi|294012042|ref|YP_003545502.1| bifunctional enzyme involved in thiolation and methylation of tRNA
           [Sphingobium japonicum UT26S]
 gi|292675372|dbj|BAI96890.1| bifunctional enzyme involved in thiolation and methylation of tRNA
           [Sphingobium japonicum UT26S]
          Length = 449

 Score =  476 bits (1225), Expect = e-132,   Method: Composition-based stats.
 Identities = 235/449 (52%), Positives = 311/449 (69%), Gaps = 10/449 (2%)

Query: 19  DQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAE 78
           D    P  F VKS+GCQMNVYD  RM ++   +G        +ADL++LNTCHIREKA +
Sbjct: 5   DAQKTPATFHVKSFGCQMNVYDGERMAELLGERGMTAAADGAEADLVILNTCHIREKAVD 64

Query: 79  KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPE 138
           KVYS +GR+        ++G   ++ VAGCVAQAEG EI RR+  V++VVGPQ Y+RLP+
Sbjct: 65  KVYSDIGRM------TREDGSRPMIAVAGCVAQAEGGEIQRRARNVDIVVGPQAYHRLPD 118

Query: 139 LLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
           L++RA  G++ VDTD  +  KF  L       +R+   TAFLTI EGCDKFCT+CVVPYT
Sbjct: 119 LIDRAGRGEQAVDTDMPLASKFGALP----SRSRQARPTAFLTIMEGCDKFCTYCVVPYT 174

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258
           RG EISRS S ++DEA+ L+D GV EITLLGQNVNAW G+   G       L+  L++I 
Sbjct: 175 RGAEISRSWSAILDEAKALVDGGVGEITLLGQNVNAWTGEDDKGRMQGMDGLVRELAKID 234

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
            L R+RYTTSHP DMSD LI AHGD   LMP+LHLPVQSG+DR+LK+MNR H+A  Y +I
Sbjct: 235 ALKRIRYTTSHPNDMSDGLIAAHGDEAKLMPFLHLPVQSGNDRVLKAMNRSHSADSYLRI 294

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           I+R+R+ RPDIA+S DFIVGFPGETD +F  T+ +V+++ YAQ +SFKYSPR GTP ++M
Sbjct: 295 IERVRAARPDIALSGDFIVGFPGETDAEFEDTLKIVEQVRYAQCYSFKYSPRPGTPAADM 354

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSV 438
             Q+   V  ERL  LQ  +   Q  FN A VG+  ++L+E+ G+  G+L+G++PWLQSV
Sbjct: 355 DGQIPAEVMDERLARLQSLINRHQAEFNAATVGRRTDILLERKGRHPGQLIGKTPWLQSV 414

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGEL 467
            + +   +IGD+++V I     ++L G+ 
Sbjct: 415 HVTAPELSIGDMVEVDIISAGPNSLAGQP 443


>gi|269213889|ref|ZP_06158241.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Neisseria cinerea ATCC
           14685]
 gi|269145278|gb|EEZ71696.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Neisseria cinerea ATCC
           14685]
          Length = 518

 Score =  476 bits (1225), Expect = e-132,   Method: Composition-based stats.
 Identities = 197/453 (43%), Positives = 284/453 (62%), Gaps = 13/453 (2%)

Query: 20  QCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQ--GYERVNSMDDADLIVLNTCHIREKAA 77
           +    ++ F++++GCQMN YDS +M  +   +  G E+V   DDAD+I+ NTC +REKA 
Sbjct: 73  KTQTMKKVFIRTFGCQMNEYDSEKMLSVLAEEHGGIEQVTQPDDADIILFNTCSVREKAQ 132

Query: 78  EKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLP 137
           EKV+S LGR+R LK        DL++ VAGCVA  EGE I++R+P V+VV GPQT +RLP
Sbjct: 133 EKVFSDLGRVRPLKEK----NPDLIIGVAGCVASQEGENIVKRAPYVDVVFGPQTLHRLP 188

Query: 138 ELL-ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
           +L+ ++   G   +D  +   +KF+ L        R  G +AF++I EGC K+C++CVVP
Sbjct: 189 KLIVDKETTGLSQIDISFPEIEKFDHLPPA-----RVEGGSAFISIMEGCSKYCSYCVVP 243

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256
           YTRG E SR L+ V+ E   L   GV EI LLGQNVNA+RG+  +GE C F+ LL  + E
Sbjct: 244 YTRGEEFSRPLNDVLTEIAGLAQQGVKEINLLGQNVNAYRGEMENGEICDFATLLRIVHE 303

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           I G+ RLR+TTSHPR+ +D +I+ + DL  L+ +LHLP+QSGSDR+L +M R +TA EY+
Sbjct: 304 IPGIERLRFTTSHPREFTDAIIECYRDLPKLVSHLHLPIQSGSDRVLSAMKRGYTALEYK 363

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
            II ++R++RPD+ +SSDFIVGFPGET+ +F  T+ LV  I +  +F F YSPR GTP +
Sbjct: 364 SIIRKLRAIRPDLCLSSDFIVGFPGETEREFEQTLKLVKDIAFDLSFVFIYSPRPGTPAA 423

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWL 435
           N+ +      K  RL  L + +  +    N   VG +   L+E    K+  +L  R+   
Sbjct: 424 NLHDDTPHEEKVRRLEALNEVIEAETARINQTMVGTVQRCLVEGISKKDPDQLQARTANN 483

Query: 436 QSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           + V        I  +I + IT+    +L G++V
Sbjct: 484 RVVNFTGTPDMINQMIDLEITEAYTFSLRGKVV 516


>gi|167625134|ref|YP_001675428.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Shewanella
           halifaxensis HAW-EB4]
 gi|229890651|sp|B0TR38|MIAB_SHEHH RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|167355156|gb|ABZ77769.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Shewanella halifaxensis
           HAW-EB4]
          Length = 475

 Score =  476 bits (1225), Expect = e-132,   Method: Composition-based stats.
 Identities = 195/449 (43%), Positives = 287/449 (63%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++  +K++GCQMN YDS +M D+    +GY   ++ ++AD+++LNTC IREKA EKV+
Sbjct: 1   MSKKLHIKTWGCQMNEYDSSKMADLLDEYEGYTLTDNAEEADVLLLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR + LK+       +L++ V GCVA  EG+ I  R+  V+++ GPQT +RLPE+++
Sbjct: 61  HQLGRWKTLKDK----KPELIIGVGGCVASQEGKAIKERAQCVDLIFGPQTLHRLPEMID 116

Query: 142 RARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           + R GK+ V+D  +   +KF+RL        R  G +AF++I EGC K+C+FCVVPYTRG
Sbjct: 117 QIRAGKKAVIDVSFPEIEKFDRLP-----EPRADGPSAFVSIMEGCSKYCSFCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR L  ++ E  +L + GV E+ LLGQNVNA+RG   D E CTF++LL  ++ I G+
Sbjct: 172 EEVSRPLDDIILEIAQLAEQGVREVNLLGQNVNAYRGATHDDEICTFAELLRYVAAIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            RLR+TTSHP + +  +I  + D   L+ +LHLPVQSGSD IL  M R H A EY+ II 
Sbjct: 232 DRLRFTTSHPIEFTQDIIDVYEDTPELVSFLHLPVQSGSDLILTQMKRGHMAIEYKSIIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           R+R  RPDI ISSDFI+GFPGE+  DF  TM L++ I +  +FSF YS R GTP +++ +
Sbjct: 292 RLRKARPDILISSDFIIGFPGESKQDFADTMKLIEDIQFDHSFSFIYSARPGTPAADLPD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVV 439
            V  + K ERL  LQ ++ +Q + ++   VG +  +L+E    K   +L GR+   + V 
Sbjct: 352 DVSLDEKKERLAILQDRITQQAMRYSRQMVGTVQRILVEGPSVKNPMELRGRTENSRVVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
               + +IG  + V I DV  ++L G  +
Sbjct: 412 FEGMHKHIGKFVDVEIVDVYTNSLRGVFI 440


>gi|260879147|ref|ZP_05891502.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Vibrio parahaemolyticus
           AN-5034]
 gi|308090270|gb|EFO39965.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Vibrio parahaemolyticus
           AN-5034]
          Length = 467

 Score =  475 bits (1224), Expect = e-132,   Method: Composition-based stats.
 Identities = 198/449 (44%), Positives = 284/449 (63%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++  +K++GCQMN YDS +M D+   + GYE     ++AD+++LNTC IREKA EKV+
Sbjct: 1   MSKKLLIKTWGCQMNEYDSSKMADLLNAANGYELTEEPEEADVLLLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR + LK+ +      +   V    A  EG+ I  R+P V+V+ GPQT +RLPE+++
Sbjct: 61  HQLGRWKTLKDKKPGVVIGVGGCV----ATQEGDHIRERAPYVDVIFGPQTLHRLPEMIK 116

Query: 142 RARFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           +++     V+D  +   +KF+RL        R  G TAF++I EGC K+CT+CVVPYTRG
Sbjct: 117 QSQTDDAPVMDISFPEIEKFDRLP-----EPRAEGATAFVSIMEGCSKYCTYCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR +  V+ E  +L + GV E+ LLGQNVNA+RG   DGE C+F++LL  ++ I G+
Sbjct: 172 EEVSRPMDDVLFEIAQLAEQGVREVNLLGQNVNAYRGPMHDGEICSFAELLRLVASIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+TTSHP + +D +I  + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II 
Sbjct: 232 DRIRFTTSHPLEFTDDIIAVYEDTPELVSFLHLPVQSGSDRILTMMKRPHTAIEYKSIIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R  RPDI ISSDFIVGFPGETD DF+ TM L+  + +  +FSF +SPR GTP ++   
Sbjct: 292 KLRKARPDIQISSDFIVGFPGETDKDFQDTMKLIKDVDFDMSFSFIFSPRPGTPAADYPC 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439
            + E VK ERL  LQ+ +  Q + ++   +     VL+E   K+   +L  R+   + V 
Sbjct: 352 DIPEQVKKERLYELQQTINAQAMRYSRLMLATEQRVLVEGPSKKNLMELRARTENNRVVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG  + V+ITDV  ++L GELV
Sbjct: 412 FEGSADLIGQFVDVKITDVFANSLRGELV 440


>gi|149192272|ref|ZP_01870484.1| hypothetical protein VSAK1_11405 [Vibrio shilonii AK1]
 gi|148833887|gb|EDL50912.1| hypothetical protein VSAK1_11405 [Vibrio shilonii AK1]
          Length = 474

 Score =  475 bits (1224), Expect = e-132,   Method: Composition-based stats.
 Identities = 195/449 (43%), Positives = 284/449 (63%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++  +K++GCQMN YDS +M D+   + GYE     ++AD+++LNTC IREKA EKV+
Sbjct: 1   MSKKLLIKTWGCQMNEYDSSKMADLLNAANGYELTEDPEEADVLLLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR + LK+ +      +   V    A  EG+ I  R+P V+V+ GPQT +RLPE+++
Sbjct: 61  HQLGRWKTLKDKKDGVVIGVGGCV----ATQEGDHIRERAPFVDVIFGPQTLHRLPEMIK 116

Query: 142 RARFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           +++  +  V+D  +   +KF+RL        R  G TAF++I EGC K+CT+CVVPYTRG
Sbjct: 117 QSQSDEAPVMDISFPEIEKFDRLP-----EPRAEGATAFVSIMEGCSKYCTYCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR +  V+ E  +L D GV E+ LLGQNVNA+RG   DG+ C+F++LL  ++ I G+
Sbjct: 172 EEVSRPMDDVLFEIAQLADQGVREVNLLGQNVNAYRGPMHDGDICSFAELLRLVASIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+TTSHP + +D +I  + D   L+ +LHLPVQSGSDR+L  M R HTA EY+ II 
Sbjct: 232 DRIRFTTSHPLEFTDDIIAVYEDTPELVSFLHLPVQSGSDRVLTMMKRPHTAIEYKSIIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R  RPDI ISSDFIVGFPGETD DF+ TM L+  + +  +FSF +SPR GTP ++   
Sbjct: 292 KLRKARPDIQISSDFIVGFPGETDKDFQDTMKLIKDVDFDMSFSFIFSPRPGTPAADYPC 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439
            + E  K +RL  LQ+ +  Q + ++   +     VL+E   K+   +L  R+   + V 
Sbjct: 352 DLPEQTKKDRLYELQQTVNSQAMRYSRQMLDTEQRVLVEGPSKKNLMELRARTENNRVVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG  + V+ITDV  ++L GELV
Sbjct: 412 FEGGAELIGQFVDVKITDVFANSLRGELV 440


>gi|167822821|ref|ZP_02454292.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia pseudomallei
           9]
 gi|226196667|ref|ZP_03792247.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia pseudomallei
           Pakistan 9]
 gi|225931198|gb|EEH27205.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia pseudomallei
           Pakistan 9]
          Length = 457

 Score =  475 bits (1224), Expect = e-132,   Method: Composition-based stats.
 Identities = 193/456 (42%), Positives = 291/456 (63%), Gaps = 18/456 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++ +VK++GCQMN YDS +M D+   ++G E+ ++ +DAD+I+ NTC +REKA EKV+
Sbjct: 1   MTKKVYVKTFGCQMNEYDSDKMVDVLNAAEGLEKTDTPEDADIILFNTCSVREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S LGR+R LK +      DLL+ V GCVA  EG  I+ R+P V++V GPQT +RLP++++
Sbjct: 61  SDLGRVRELKEA----KPDLLIGVGGCVASQEGASIVARAPYVDLVFGPQTLHRLPQMID 116

Query: 142 -RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
            R   G+  VD  +   +KF+ L        R  G +AF++I EGC K+C++CVVPYTRG
Sbjct: 117 ARRESGRAQVDITFPEIEKFDHLPPA-----RVEGPSAFVSIMEGCSKYCSYCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG--EKCTFSDLLYSLSEIK 258
            E+SR L  V+ E   L D GV E+TLLGQNVNA+RG    G  E   F+ L+  +++I 
Sbjct: 172 DEVSRPLDDVLTEVAGLADQGVREVTLLGQNVNAYRGAIAAGSAEIADFATLIEYVADIP 231

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           G+ R+RYTTSHP++ +  L+  +  +  L+ +LHLPVQ GSDRIL +M R +T  EY+ +
Sbjct: 232 GIERIRYTTSHPKEFTQRLLDVYAKVPKLVDHLHLPVQHGSDRILMAMKRGYTVLEYKSV 291

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           I ++R++RP++++S+D IVGFPGETD DF  TM LV ++ Y  +FSF YSPR GTP +N+
Sbjct: 292 IRKLRAIRPNLSLSTDIIVGFPGETDADFDKTMALVHEMSYDTSFSFIYSPRPGTPAANL 351

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQS 437
            +     +K +RL  LQ  + E     + + +G++  +L+E   ++   +L GR+   + 
Sbjct: 352 ADDTPRELKLKRLQHLQATIEENVARISQSMLGKVERILVEGPSRKNPNELAGRTENNRV 411

Query: 438 VVLNSK----NHNIGDIIKVRITDVKISTLYGELVV 469
           V   +        IG +I V+I      +L GELV+
Sbjct: 412 VNFPAPSAAHPRLIGQMIDVKINHAYPHSLRGELVL 447


>gi|156973539|ref|YP_001444446.1| hypothetical protein VIBHAR_01230 [Vibrio harveyi ATCC BAA-1116]
 gi|229891025|sp|A7N1G9|MIAB_VIBHB RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|156525133|gb|ABU70219.1| hypothetical protein VIBHAR_01230 [Vibrio harveyi ATCC BAA-1116]
          Length = 474

 Score =  475 bits (1224), Expect = e-132,   Method: Composition-based stats.
 Identities = 197/449 (43%), Positives = 285/449 (63%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++  +K++GCQMN YDS +M D+   + GYE     ++AD+++LNTC IREKA EKV+
Sbjct: 1   MSKKLLIKTWGCQMNEYDSSKMADLLNAANGYELTEEPEEADVLLLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR + LK+ +      +   V    A  EG+ I +R+P V+V+ GPQT +RLPE+++
Sbjct: 61  HQLGRWKTLKDKKPGVVIGVGGCV----ATQEGDHIRQRAPYVDVIFGPQTLHRLPEMIK 116

Query: 142 RARFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           +++  +  V+D  +   +KF+RL        R  G TAF++I EGC K+CT+CVVPYTRG
Sbjct: 117 QSQSDEAPVMDISFPEIEKFDRLP-----EPRAEGATAFVSIMEGCSKYCTYCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR +  V+ E  +L D GV E+ LLGQNVNA+RG   DGE C+F++LL  ++ I G+
Sbjct: 172 EEVSRPMDDVLFEIAQLADQGVREVNLLGQNVNAYRGPMHDGEICSFAELLRLVASIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+TTSHP + +D +I  + D   L+ +LHLPVQSGSDR+L  M R HT  EY+ II 
Sbjct: 232 DRIRFTTSHPLEFTDDIIAVYEDTPELVSFLHLPVQSGSDRVLTMMKRPHTGIEYKSIIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R  RPDI ISSDFIVGFPGETD DF+ TM L+  + +  +FSF +SPR GTP ++   
Sbjct: 292 KLRKARPDIQISSDFIVGFPGETDKDFQDTMKLIKDVDFDMSFSFIFSPRPGTPAADYPC 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439
            + E VK ERL  LQ+ +  Q + ++   +     VL+E   K+   +L  R+   + V 
Sbjct: 352 DLSEQVKKERLYELQQTVNTQAMRYSRQMLDTEQRVLVEGPSKKNLMELRARTENNRVVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG  + V+ITDV  ++L GELV
Sbjct: 412 FEGSADLIGQFVDVKITDVFANSLRGELV 440


>gi|87199004|ref|YP_496261.1| tRNA-i(6)A37 modification enzyme MiaB [Novosphingobium
           aromaticivorans DSM 12444]
 gi|123736257|sp|Q2G9P6|MIAB_NOVAD RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|87134685|gb|ABD25427.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 443

 Score =  475 bits (1224), Expect = e-132,   Method: Composition-based stats.
 Identities = 244/443 (55%), Positives = 304/443 (68%), Gaps = 12/443 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + F VKS+GCQMNVYD  RM ++  +QG       DDADL+VLNTCHIREKA EKVYS +
Sbjct: 12  KTFRVKSFGCQMNVYDGERMAELLAAQGMSAAGDGDDADLVVLNTCHIREKATEKVYSDI 71

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR+R        +G   L+ VAGCVAQAEGEEI+ R+P V VVVGPQ+Y+RLPE++  A 
Sbjct: 72  GRLRRA------DGSAPLIAVAGCVAQAEGEEIMARAPSVKVVVGPQSYHRLPEMVADAA 125

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            GKR  +TD   E KF  L        RK   TAFLT+QEGCDKFCT+CVVPYTRG EIS
Sbjct: 126 AGKRSTETDMPAEAKFAALP-----KRRKSAPTAFLTVQEGCDKFCTYCVVPYTRGAEIS 180

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R  S +V+EA+ L+  G  EITLLGQNVNAW G+   G       L  +L+    L R+R
Sbjct: 181 RPFSDLVEEAKLLVAGGAREITLLGQNVNAWAGEDDKGRPIGLDGLARALAAEPDLKRIR 240

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           YTTSHP DM+D LI AHG+L+ LMP+LHLPVQ+G+DR+LK+MNR HTA  Y  +++RIR+
Sbjct: 241 YTTSHPNDMTDGLIAAHGELEKLMPFLHLPVQAGNDRVLKAMNRSHTADSYMALLERIRA 300

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
            RPDIA+S DFIVGFPGETD +F  T+ LVD +GYAQAFSFKYS R GTP + M   V  
Sbjct: 301 ARPDIALSGDFIVGFPGETDAEFEDTLRLVDAVGYAQAFSFKYSARPGTPAATMENHVPV 360

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
            V  ERL  LQ  L   Q++FN A VG+  EVL+E+ GK  G+ +G+SPWLQSV  +   
Sbjct: 361 AVMDERLQRLQAALNRDQLAFNKASVGKTCEVLVERRGKHPGQWLGKSPWLQSVHFSG-E 419

Query: 445 HNIGDIIKVRITDVKISTLYGEL 467
             IGD++ V + +   +++ G L
Sbjct: 420 AEIGDMVTVELIEAGPNSISGRL 442


>gi|167561620|ref|ZP_02354536.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia oklahomensis
           EO147]
 gi|167568856|ref|ZP_02361730.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia oklahomensis
           C6786]
          Length = 457

 Score =  475 bits (1224), Expect = e-132,   Method: Composition-based stats.
 Identities = 196/456 (42%), Positives = 292/456 (64%), Gaps = 18/456 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++ +VK++GCQMN YDS +M D+   S+G E+ +S +DAD+I+ NTC +REKA EKV+
Sbjct: 1   MTKKVYVKTFGCQMNEYDSDKMVDVLNASEGLEKTDSPEDADIILFNTCSVREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S LGR+R LK +      DLL+ V GCVA  EG  I+ R+P V++V GPQT +RLP++++
Sbjct: 61  SDLGRVRELKEA----KPDLLIGVGGCVASQEGASIVARAPYVDLVFGPQTLHRLPQMID 116

Query: 142 RARF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
             R  G+  VD  +   +KF+ L        R  G +AF++I EGC K+C++CVVPYTRG
Sbjct: 117 ARRASGRAQVDITFPEIEKFDHLPPA-----RVEGPSAFVSIMEGCSKYCSYCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG--EKCTFSDLLYSLSEIK 258
            E+SR L  V+ E   L D GV E+TLLGQNVNA+RG    G  +   F+ L+  +++I 
Sbjct: 172 DEVSRPLDDVLTEIAGLADQGVREVTLLGQNVNAYRGALTAGASDIADFATLIEYVADIP 231

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           G+ R+RYTTSHP++ +  L+  +  +  L+ +LHLPVQ GSDRIL +M R +T  EY+ +
Sbjct: 232 GIERIRYTTSHPKEFTQRLLDVYAKVPKLVDHLHLPVQHGSDRILMAMKRGYTVLEYKSV 291

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           I ++R++RP++++S+D IVGFPGET+ DF  TM LV ++ Y  +FSF YSPR GTP +N+
Sbjct: 292 IRKLRAIRPNLSLSTDIIVGFPGETEADFDKTMALVHEMSYDTSFSFIYSPRPGTPAANL 351

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQS 437
            +     +K +RL  LQ  + E  V  + + VG++  +L+E    K+  +L GR+   + 
Sbjct: 352 ADDTPRELKLKRLQHLQATIEENVVRISRSMVGKVERILVEGPSRKDPNELAGRTENNRV 411

Query: 438 VVLNSK----NHNIGDIIKVRITDVKISTLYGELVV 469
           V   +        IG +I V+I      +L GELV+
Sbjct: 412 VNFPAPLASHPRLIGQMIDVKINHAYPHSLRGELVL 447


>gi|229061375|ref|ZP_04198721.1| hypothetical protein bcere0026_34620 [Bacillus cereus AH603]
 gi|228717914|gb|EEL69560.1| hypothetical protein bcere0026_34620 [Bacillus cereus AH603]
          Length = 509

 Score =  475 bits (1223), Expect = e-132,   Method: Composition-based stats.
 Identities = 183/450 (40%), Positives = 270/450 (60%), Gaps = 15/450 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
             ++F++++YGCQMN +D+  M  +F + GYE   S ++AD+I+LNTC IRE A  KV+ 
Sbjct: 64  AGRKFYIRTYGCQMNEHDTEVMAGIFTTLGYEPTFSTEEADVILLNTCAIRENAENKVFG 123

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELL 140
            LG +++LK    +    L++ V GC++Q E    +I++++  V++V G    +RLP +L
Sbjct: 124 ELGHLKSLK----RRNPALIIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYIL 179

Query: 141 ERARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           + A F K  V   +S E D  E L  V     R+  + A++ I  GCDKFCT+C+VPYTR
Sbjct: 180 KDAMFSKETVVEVWSKEGDVIENLPKV-----RRGDIKAWVNIMYGCDKFCTYCIVPYTR 234

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G E SR    ++ E R L  NG  EITLLGQNVNA  GK  +  +    DL+  L +I  
Sbjct: 235 GKERSRRPEDIIKEIRHLAANGYKEITLLGQNVNA-YGKDFEDIQYGLGDLMDELRKID- 292

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           + R+R+TTSHPRD  + LI   G    L+ ++HLPVQSGS  +LK M R+++   Y +++
Sbjct: 293 IARIRFTTSHPRDFDNHLIDVLGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELV 352

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            +I+   P+  +++D IVGFP ETD+ F  TM L  ++G+  AF+F YSPR GTP + M 
Sbjct: 353 RKIKETIPNAVLTTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMQ 412

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSV 438
           + V   VK ERL  L   + E  V+ N   +GQI+EVL+E   K   + L G +   + V
Sbjct: 413 DNVPMEVKKERLQRLNTLVNEYAVNKNKRYIGQIVEVLVEGESKNNPEVLAGYTRTNKLV 472

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468
              +    IG ++KV+IT+ K  +L GELV
Sbjct: 473 NFVASKSLIGQLVKVKITEAKTWSLNGELV 502


>gi|323527295|ref|YP_004229448.1| RNA modification enzyme, MiaB family [Burkholderia sp. CCGE1001]
 gi|323384297|gb|ADX56388.1| RNA modification enzyme, MiaB family [Burkholderia sp. CCGE1001]
          Length = 461

 Score =  475 bits (1223), Expect = e-132,   Method: Composition-based stats.
 Identities = 194/456 (42%), Positives = 293/456 (64%), Gaps = 18/456 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++ +VK++GCQMN YDS +M D+   ++G  + ++ +DAD+I+ NTC +REKA EKV+
Sbjct: 1   MTKKVYVKTFGCQMNEYDSDKMVDVLGAAEGLVKTDTPEDADVILFNTCSVREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S LGR+R LK +      DL++ V GCVA  EG  I+ R+P V++V GPQT +RLP++++
Sbjct: 61  SDLGRVRELKEA----NPDLIIGVGGCVASQEGASIVARAPYVDLVFGPQTLHRLPQMID 116

Query: 142 RARF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           + R  G+  VD  +   +KF+ L        R  G +AF++I EGC K+C++CVVPYTRG
Sbjct: 117 KRRESGRAQVDITFPEIEKFDHLPPA-----RVEGPSAFVSIMEGCSKYCSYCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG--EKCTFSDLLYSLSEIK 258
            E+SR L  V+ E   L D GV E+TLLGQNVNA+RG    G  E   F+ L+  +++I 
Sbjct: 172 EEVSRPLDDVLTEIAGLADQGVREVTLLGQNVNAYRGALTLGSSEIADFATLIEYVADIP 231

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           G+ R+RYTTSHP++ +  LI  +  +  L+ +LHLPVQ GSDRIL +M R +T  EY+ +
Sbjct: 232 GIERIRYTTSHPKEFTQRLIDTYAKVPKLVSHLHLPVQHGSDRILMAMKRGYTVLEYKSV 291

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           I ++R++RPD+++S+D IVGFPGET++DF   M LV ++ Y  +FSF YSPR GTP +N+
Sbjct: 292 IRKLRAIRPDLSLSTDMIVGFPGETEEDFDKMMALVHEMKYDTSFSFIYSPRPGTPAANL 351

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQS 437
            +     VK +RL  LQ  + E     +D+ VG++  +L+E+   K+  +L GR+   + 
Sbjct: 352 HDDTPREVKLKRLQHLQATIEENVQRISDSMVGKVERILVERPARKDPNELAGRTENNRV 411

Query: 438 VVLNSK----NHNIGDIIKVRITDVKISTLYGELVV 469
           V   +        IG ++ V+I      +L GELV+
Sbjct: 412 VNFPAPVASHARLIGQMVDVKIVKAYPHSLRGELVL 447


>gi|167835506|ref|ZP_02462389.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia
           thailandensis MSMB43]
          Length = 461

 Score =  475 bits (1223), Expect = e-132,   Method: Composition-based stats.
 Identities = 194/460 (42%), Positives = 291/460 (63%), Gaps = 22/460 (4%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++ +VK++GCQMN YDS +M D+   ++G E+ ++ +DAD+I+ NTC +REKA EKV+
Sbjct: 1   MTKKVYVKTFGCQMNEYDSDKMVDVLNAAEGLEKTDTPEDADIILFNTCSVREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S LGR+R LK +      DLL+ V GCVA  EG  I+ R+P V++V GPQT +RLP++++
Sbjct: 61  SDLGRVRELKEA----KPDLLIGVGGCVASQEGASIVARAPYVDLVFGPQTLHRLPQMID 116

Query: 142 -RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
            R   G+  VD  +   +KF+ L        R  G +AF++I EGC K+C++CVVPYTRG
Sbjct: 117 ARRESGRAQVDITFPEIEKFDHLPPA-----RVEGPSAFVSIMEGCSKYCSYCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC------TFSDLLYSL 254
            E+SR L  V+ E   L D GV E+TLLGQNVNA+RGK              F+ L+  +
Sbjct: 172 DEVSRPLDDVLTEIAGLADQGVREVTLLGQNVNAYRGKFGGALPAGAHDVADFATLIEYV 231

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
           ++I G+ R+RYTTSHP++ +  L+  +  +  L+ +LHLPVQ GSDRIL +M R +T  E
Sbjct: 232 ADIPGIERIRYTTSHPKEFTQRLLDVYAKVPKLVDHLHLPVQHGSDRILMAMKRGYTVLE 291

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
           Y+ +I ++R++RP++++S+D IVGFPGET+ DF  TM LV ++ Y  +FSF YSPR GTP
Sbjct: 292 YKSLIRKLRAIRPNLSLSTDIIVGFPGETEADFDKTMALVHEMSYDTSFSFIYSPRPGTP 351

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSP 433
            +++ +     VK ERL  LQ  + E     + + VG++  +L+E    K+  +L GR+ 
Sbjct: 352 AASLADDTPRGVKLERLQHLQATIEENVARISQSMVGRVERILVEGPSRKDPNELAGRTE 411

Query: 434 WLQSVVLNSK----NHNIGDIIKVRITDVKISTLYGELVV 469
             + V   +     +  IG +I V+I      +L GELV+
Sbjct: 412 NNRVVNFPAPLAAHSRLIGQMIDVKINHAYPHSLRGELVL 451


>gi|296157337|ref|ZP_06840173.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia sp. Ch1-1]
 gi|295892673|gb|EFG72455.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia sp. Ch1-1]
          Length = 457

 Score =  475 bits (1223), Expect = e-132,   Method: Composition-based stats.
 Identities = 195/456 (42%), Positives = 292/456 (64%), Gaps = 18/456 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++ +VK++GCQMN YDS +M D+   ++G  + ++ +DAD+I+ NTC +REKA EKV+
Sbjct: 1   MTKKVYVKTFGCQMNEYDSDKMVDVLGAAEGLVKTDTPEDADVILFNTCSVREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S LGR+R LK +      +L++ V GCVA  EG  I+ R+P V++V GPQT +RLP++++
Sbjct: 61  SDLGRVRELKEA----NPNLIIGVGGCVASQEGASIVARAPYVDLVFGPQTLHRLPQMID 116

Query: 142 RARF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           + R  G+  VD  +   +KF+ L        R  G TAF++I EGC K+C++CVVPYTRG
Sbjct: 117 KRRESGRAQVDISFPEIEKFDHLPPA-----RVDGPTAFVSIMEGCSKYCSYCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG--EKCTFSDLLYSLSEIK 258
            E+SR L  V+ E   L D GV E+TLLGQNVNA+RG    G  E   F+ L+  +++I 
Sbjct: 172 EEVSRPLDDVLTEIAGLADQGVREVTLLGQNVNAYRGGLTLGSSEIADFATLIEYVADIP 231

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           G+ R+RYTTSHP++ +  LI  +  +  L+ +LHLPVQ GSDRIL +M R +T  EY+ +
Sbjct: 232 GIERIRYTTSHPKEFTQRLIDTYAKVPKLVSHLHLPVQHGSDRILMAMKRGYTVLEYKSV 291

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           I ++R++RPD+++S+D IVGFPGET++DF   M LV ++ Y  +FSF YSPR GTP +N+
Sbjct: 292 IRKLRAIRPDLSLSTDMIVGFPGETEEDFDKMMTLVHEMKYDTSFSFIYSPRPGTPAANL 351

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQS 437
            +     VK  RL  LQ  + E     +D+ VG+I  +L+E+   K+  +L GR+   + 
Sbjct: 352 HDDTPREVKLRRLQHLQATIEENVQRISDSMVGKIERILVERPARKDPNELAGRTENNRV 411

Query: 438 VVLNSK----NHNIGDIIKVRITDVKISTLYGELVV 469
           V   +        IG ++ V+I      +L GELV+
Sbjct: 412 VNFPAPVASHARLIGQMVDVKIVKAYPHSLRGELVL 447


>gi|167626244|ref|YP_001676744.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Francisella
           philomiragia subsp. philomiragia ATCC 25017]
 gi|229890537|sp|B0TXS4|MIAB_FRAP2 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|167596245|gb|ABZ86243.1| 2-alkenal reductase [Francisella philomiragia subsp. philomiragia
           ATCC 25017]
          Length = 442

 Score =  475 bits (1223), Expect = e-132,   Method: Composition-based stats.
 Identities = 192/447 (42%), Positives = 279/447 (62%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYER-VNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ F+K+ GCQMN YDS +M ++     +    +   +AD+I++NTC IREKA EKV+  
Sbjct: 5   KKVFIKTLGCQMNEYDSQKMHEVLDEHFHTVKTDDYKEADIILINTCSIREKAQEKVFHE 64

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR +NLK    K+  DL++ V GCVA  EGE I++R+P V++V GPQT +RLPE+++R 
Sbjct: 65  LGRWKNLK----KKKEDLVIGVGGCVASQEGENIIKRAPFVDLVFGPQTIHRLPEMIKRK 120

Query: 144 RF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           +   +  VD  +   +KF+ L        +  G  A+++I EGCDK+C++CVVPYTRG E
Sbjct: 121 QSTQESQVDISFPEVEKFDFLP-----EPKAEGAKAYVSIMEGCDKYCSYCVVPYTRGPE 175

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           ++R    V+ E   L + GV EITLLGQNVN + G   +GE    + L++ ++EI G+ R
Sbjct: 176 VNRPFEDVLGECAALAEQGVKEITLLGQNVNHYLGPMENGETADLALLIHFIAEIDGIER 235

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP + S  LI A+G +  L  +LHLPVQ GSDR+L +M R HT  E++Q I ++
Sbjct: 236 IRFTTSHPVEFSQNLIDAYGSVPELANHLHLPVQHGSDRVLINMKRNHTILEFKQKIRKL 295

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R++RPDI ISSDFIVGFPGET++DF+  MDLV  + + Q+FSF YS R GTP +++ +  
Sbjct: 296 RAIRPDITISSDFIVGFPGETEEDFQKLMDLVKDVNFDQSFSFIYSKRPGTPAADLPDDT 355

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLN 441
              VK +RL  LQ  L       +   VG    +L+E    K+   L GR+   + V   
Sbjct: 356 PMEVKKDRLKRLQDLLNSNAQIISRQMVGTEQRILVEGTSKKDDNVLAGRTENNRIVNFI 415

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                IG    V+IT+   ++L GEL+
Sbjct: 416 GDKSLIGQFAMVKITESLPNSLRGELI 442


>gi|71279941|ref|YP_270240.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Colwellia
           psychrerythraea 34H]
 gi|123631590|sp|Q47Y80|MIAB_COLP3 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|71145681|gb|AAZ26154.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Colwellia psychrerythraea
           34H]
          Length = 480

 Score =  475 bits (1222), Expect = e-132,   Method: Composition-based stats.
 Identities = 197/449 (43%), Positives = 297/449 (66%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++ ++K++GCQMN YDS +M ++  S  G+  V   + AD+I+LNTC IREKA EKV+
Sbjct: 1   MSKKLYIKTWGCQMNEYDSQKMAELLDSTHGFSLVEEAEQADVILLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR +NLK+       DLL+ V GCVA  EG+ I +R+P V+++ GPQT +RLPE+L 
Sbjct: 61  HQLGRWKNLKDK----KPDLLIGVGGCVASQEGDSIRKRAPFVDMIFGPQTLHRLPEMLN 116

Query: 142 RARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           + +  K  ++D  +   +KF+RL        +  G +AF++I EGC K+CTFCVVPYTRG
Sbjct: 117 QLQHSKSPIIDVSFPEIEKFDRLP-----EPKADGASAFVSIMEGCSKYCTFCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR L  V+ E  +L + GV E+ LLGQNVNA+RG+  DG  C F+DL+  ++ I G+
Sbjct: 172 EEVSRPLDDVLYEIAQLAEQGVREVNLLGQNVNAYRGETHDGSICRFADLVRLVATIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+RYTTSHP + +D +I+A+ D+  L+ +LHLPVQSG DRIL  M R HTA EY+  I 
Sbjct: 232 DRIRYTTSHPVEFTDDIIEAYTDVPELVNHLHLPVQSGCDRILTQMKRGHTALEYKSQIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           +++ VRP++++SSDFI+GFPGETD+DF ATMDL+  + +  +FSF YS R GTP +++ +
Sbjct: 292 KLKKVRPELSMSSDFIIGFPGETDEDFTATMDLIKAVDFDLSFSFIYSARPGTPAADLPD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439
            + +  K +RL  LQ+++  Q +      +     VL+E   ++   +L G++   ++V 
Sbjct: 352 DISDQTKKDRLKLLQEQITHQALRIARQMLNTEQRVLVEGPSRKNPMELRGKTENNRTVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
             + +  IG  + ++ITDV  ++L GELV
Sbjct: 412 FVAPHSVIGQFVDIKITDVVANSLRGELV 440


>gi|153001812|ref|YP_001367493.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Shewanella
           baltica OS185]
 gi|160876545|ref|YP_001555861.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Shewanella
           baltica OS195]
 gi|304410288|ref|ZP_07391907.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Shewanella baltica OS183]
 gi|307302001|ref|ZP_07581759.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Shewanella baltica BA175]
 gi|229890649|sp|A6WRJ1|MIAB_SHEB8 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|229890650|sp|A9KZZ3|MIAB_SHEB9 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|151366430|gb|ABS09430.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Shewanella baltica OS185]
 gi|160862067|gb|ABX50601.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Shewanella baltica OS195]
 gi|304351697|gb|EFM16096.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Shewanella baltica OS183]
 gi|306914039|gb|EFN44460.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Shewanella baltica BA175]
 gi|315268739|gb|ADT95592.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Shewanella baltica OS678]
          Length = 474

 Score =  475 bits (1222), Expect = e-132,   Method: Composition-based stats.
 Identities = 196/449 (43%), Positives = 284/449 (63%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++  +K++GCQMN YDS +M D+    QGY       +AD+++LNTC IREKA EKV+
Sbjct: 1   MSKKLHIKTWGCQMNEYDSSKMADLLGEYQGYTLTEEASEADILLLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR + LK+       +L++ V GCVA  EG+ I  R+  V+++ GPQT +RLPE++E
Sbjct: 61  HQLGRWKTLKDK----NPNLIIGVGGCVASQEGKAIKDRAQCVDIIFGPQTLHRLPEMIE 116

Query: 142 RARFG-KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           + R G K V+D  +   +KF+RL        R  G TAF++I EGC K+C+FCVVPYTRG
Sbjct: 117 QVRRGDKAVIDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCSKYCSFCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR    ++ E  +L + GV E+ LLGQNVNA+RG   DG  CTF++LL  ++ I G+
Sbjct: 172 EEVSRPSDDIILEIAQLAEQGVREVNLLGQNVNAYRGATHDGAICTFAELLRFVAAIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+TTSHP + +  +I  + D   L+ +LHLPVQSGSDRIL +M R H A EY+ II 
Sbjct: 232 DRIRFTTSHPIEFTQDIIDVYEDTPELVSFLHLPVQSGSDRILTAMKRGHMAIEYKSIIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           R+R  R  I ISSDFI+GFPGET +DF  TM L++ IG+  +FSF YS R GTP +++ +
Sbjct: 292 RLRKAREGIQISSDFIIGFPGETKEDFADTMKLIEDIGFDHSFSFIYSARPGTPAADLPD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVV 439
            VD   K +RL  LQ ++ +Q + ++   +G +  +L+E    K   +L GR+   + V 
Sbjct: 352 NVDMEEKKQRLAILQDRITQQAMRYSRHMMGTVQRILVEGPSVKNPMELRGRTENNRVVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
              +  +IG  + V I DV  ++L G  +
Sbjct: 412 FEGQPKHIGTFVDVEIVDVYTNSLRGVFI 440


>gi|260574833|ref|ZP_05842835.1| RNA modification enzyme, MiaB family [Rhodobacter sp. SW2]
 gi|259022838|gb|EEW26132.1| RNA modification enzyme, MiaB family [Rhodobacter sp. SW2]
          Length = 440

 Score =  475 bits (1222), Expect = e-132,   Method: Composition-based stats.
 Identities = 232/445 (52%), Positives = 308/445 (69%), Gaps = 10/445 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F+K+YGCQMNVYDS RM +     GY     ++DAD++++NTCHIREKA+EK++S L
Sbjct: 5   KKLFIKTYGCQMNVYDSERMVEALGVDGYVTTEVVEDADMVLINTCHIREKASEKLFSDL 64

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR++ LK +R     DL + VAGCVAQAEG EILRR P+V++VVGPQ+Y+RLP +   A 
Sbjct: 65  GRLKPLKVAR----PDLKIGVAGCVAQAEGAEILRRMPLVDLVVGPQSYHRLPAMARAAG 120

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G + +DTD+  EDKF+ L         +RG  AFLT+QEGCDKFC FCVVPYTRG E+S
Sbjct: 121 QGAQAIDTDFPAEDKFDHLP----QRKAQRGPAAFLTVQEGCDKFCAFCVVPYTRGAEVS 176

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R +S+++ EAR L+  GV E+TLLGQNVNA+     D      + LL  +++I GLVRLR
Sbjct: 177 RPVSRLLAEARDLVGRGVREVTLLGQNVNAYHHVD-DAGTWGLARLLREMAQIDGLVRLR 235

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           Y TSHP DM D LI AHGDL  L PYLHLPVQSGSDRIL++MNR+HTA +Y  ++ R+R+
Sbjct: 236 YMTSHPNDMEDDLIAAHGDLPALAPYLHLPVQSGSDRILRAMNRKHTAAQYLALVARVRA 295

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
            RPDI ++SDFIVGFPGET+ DF AT+ L+  + +  A+SFKYS R GTP +   E VD 
Sbjct: 296 ARPDILLTSDFIVGFPGETEADFEATLALIRAVNFGMAYSFKYSARPGTPAAEKPE-VDP 354

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
            V   RL  LQ  L  QQ +  +A VG+ + VL EK G+  G++VG+S  L +V +    
Sbjct: 355 AVADARLQRLQALLTAQQRAAQEAMVGREVSVLYEKKGRLPGQMVGKSDHLHAVHVTDPQ 414

Query: 445 HNIGDIIKVRITDVKISTLYGELVV 469
             +GD+++VRIT    ++L GE + 
Sbjct: 415 GAVGDLVRVRITAASSNSLAGEPLA 439


>gi|241668686|ref|ZP_04756264.1| 2-alkenal reductase [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
 gi|254877218|ref|ZP_05249928.1| conserved hypothetical protein [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254843239|gb|EET21653.1| conserved hypothetical protein [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 442

 Score =  475 bits (1222), Expect = e-132,   Method: Composition-based stats.
 Identities = 192/447 (42%), Positives = 279/447 (62%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYER-VNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ F+K+ GCQMN YDS +M ++     +    +   +AD+I++NTC IREKA EKV+  
Sbjct: 5   KKVFIKTLGCQMNEYDSQKMHEVLDEHFHTVKTDDYKEADIILINTCSIREKAQEKVFHE 64

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR +NLK    K+  DL++ V GCVA  EGE I++R+P V++V GPQT +RLPE+++R 
Sbjct: 65  LGRWKNLK----KKKEDLVIGVGGCVASQEGENIIKRAPFVDLVFGPQTIHRLPEMIKRK 120

Query: 144 RF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           +   +  VD  +   +KF+ L        +  G  A+++I EGCDK+C++CVVPYTRG E
Sbjct: 121 QSTQESQVDISFPEVEKFDFLP-----EPKAEGAKAYVSIMEGCDKYCSYCVVPYTRGPE 175

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           ++R    V+ E   L + GV EITLLGQNVN + G   +GE    + L++ ++EI G+ R
Sbjct: 176 VNRPFEDVLGECAALAEQGVKEITLLGQNVNHYLGPMENGETADLALLIHFIAEIDGIER 235

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP + S  LI A+G +  L  +LHLPVQ GSDR+L +M R HT  E++Q I ++
Sbjct: 236 IRFTTSHPVEFSQNLIDAYGSVPELANHLHLPVQHGSDRVLINMKRNHTILEFKQKIRKL 295

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R++RPDI ISSDFIVGFPGET++DF+  MDLV  + + Q+FSF YS R GTP +++ +  
Sbjct: 296 RAIRPDITISSDFIVGFPGETEEDFQKLMDLVKDVNFDQSFSFIYSKRPGTPAADLPDDT 355

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLN 441
              VK +RL  LQ  L       +   VG    +L+E    K+   L GR+   + V   
Sbjct: 356 PIEVKKDRLKRLQDLLNSNAQIISRQMVGTEQRILVEGTSKKDDNVLAGRTENNRIVNFI 415

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                IG    V+IT+   ++L GEL+
Sbjct: 416 GDKSLIGQFAMVKITESLPNSLRGELI 442


>gi|20807803|ref|NP_622974.1| 2-methylthioadenine synthetase [Thermoanaerobacter tengcongensis
           MB4]
 gi|81481577|sp|Q8RA72|MIAB_THETN RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|20516361|gb|AAM24578.1| 2-methylthioadenine synthetase [Thermoanaerobacter tengcongensis
           MB4]
          Length = 471

 Score =  475 bits (1222), Expect = e-132,   Method: Composition-based stats.
 Identities = 184/446 (41%), Positives = 282/446 (63%), Gaps = 15/446 (3%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           + +++YGCQMNV+DS ++  M    GY+    ++ AD+++ NTC +RE A  +V   + +
Sbjct: 33  YHIETYGCQMNVHDSEKLAGMLEEMGYKYTEDLEKADVLLFNTCAVREHAEVRVLGRVSQ 92

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           I+ LKN       +L++ ++GC+ Q +   E I  + P V++V G    Y+ PELL +A 
Sbjct: 93  IKELKNR----NPNLIIGISGCMMQEKHIVEAIREKYPHVDIVFGTHNIYKFPELLWQAL 148

Query: 145 FGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             + +V+D   + ++  E L I      R   + A++ I  GC+ FCT+C+VPYTRG E 
Sbjct: 149 NSRVQVIDVIENTQNVIEGLPI-----RRDSNLKAWVNIIYGCNNFCTYCIVPYTRGREK 203

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR    ++ E ++L + G  EITLLGQNVN+  GK L G+   F+ LLY L++IKG+ R+
Sbjct: 204 SRRPEDIIAEVKELAEKGYKEITLLGQNVNS-YGKDLGGD-INFAKLLYMLNDIKGIERI 261

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+ TSHP+D+SD LI A  DLD +  +LHLPVQ+GS++ILK MNRR+T   Y +IID++R
Sbjct: 262 RFMTSHPKDISDELIYAMRDLDKVCEHLHLPVQAGSNKILKRMNRRYTREHYLEIIDKVR 321

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           +  PDIAI++D IVGFPGET++DF  T+DLV+++ +  A++F YS R GTP ++M +QVD
Sbjct: 322 ANIPDIAITTDIIVGFPGETEEDFFQTLDLVERVRFDGAYTFMYSKRAGTPAASMPDQVD 381

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVLNS 442
           + VK +RL+ L +   +  +  +    G+++EVLIE   K +  KL  R+   + V    
Sbjct: 382 DEVKKDRLIRLIELQNKISLEKSAELKGKVVEVLIEGVSKRDPNKLTSRTRTNKVVHFIG 441

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
               IG +  V+IT+ K  T+ GELV
Sbjct: 442 DESLIGKLANVKITETKAWTMQGELV 467


>gi|21108720|gb|AAM37312.1| conserved hypothetical protein [Xanthomonas axonopodis pv. citri
           str. 306]
          Length = 452

 Score =  474 bits (1221), Expect = e-131,   Method: Composition-based stats.
 Identities = 198/450 (44%), Positives = 285/450 (63%), Gaps = 17/450 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + ++K++GCQMN YDS +M D+  + +G E  +  ++AD++++NTC IREKA EKV+S L
Sbjct: 5   KLYIKTHGCQMNEYDSAKMADVLAASEGLELTDDPEEADVVLVNTCSIREKAQEKVFSQL 64

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-ERA 143
           GR + LK      G  +++ V GCVA  EGE I++R+P V++V GPQT +RLPEL+  R 
Sbjct: 65  GRWKALKAG----GKPVIIGVGGCVASQEGEAIVKRAPYVDLVFGPQTLHRLPELIRARR 120

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             GK  VD  +   +KF+RL        R  G +AF++I EGC K+C+FCVVPYTRG E+
Sbjct: 121 ESGKSQVDISFPEIEKFDRLP-----EPRAEGPSAFVSIMEGCSKYCSFCVVPYTRGEEV 175

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK-----CTFSDLLYSLSEIK 258
           SR    V+ E  +L   GV EI LLGQNVNA+RG                 L+ ++++I+
Sbjct: 176 SRPFEDVLVEVAQLAAQGVREINLLGQNVNAYRGAYGADAGDAAQYADLGLLIRTIAQIE 235

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           G+ R+R+TTSHP + SD L+ A+ D+  L  YLHLPVQ+GSDRIL +M R +TA E++  
Sbjct: 236 GIGRIRFTTSHPLEFSDSLVDAYRDVPQLANYLHLPVQAGSDRILSAMKRGYTALEFKSK 295

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           I ++R+VRPDI+ISSDFIVGFPGET+ DF  TM L++ +G+ Q+FSF YS R GTP S++
Sbjct: 296 IRKLRAVRPDISISSDFIVGFPGETEADFEKTMKLIEDVGFDQSFSFVYSRRPGTPASDL 355

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQS 437
            +   E VK  RL  LQ  +     S + + VG +  VL+E    ++  +L G+S  ++ 
Sbjct: 356 QDDTPEAVKQARLARLQAHINAHAASISQSMVGSVQRVLVEGPSRRDPNELTGKSENMRP 415

Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
           V        IG  + V IT+   ++L G +
Sbjct: 416 VNFPGNPRLIGQFVDVLITEAMSNSLRGRI 445


>gi|332975197|gb|EGK12097.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Kingella kingae ATCC
           23330]
          Length = 440

 Score =  474 bits (1221), Expect = e-131,   Method: Composition-based stats.
 Identities = 196/448 (43%), Positives = 286/448 (63%), Gaps = 13/448 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQ--GYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           ++ F++++GCQMN YDS +M  +   +  G E+V   + AD+I+ NTC +REKA EKV+S
Sbjct: 2   KKVFIRTFGCQMNEYDSEKMLAVLAEEHGGIEQVAEPEGADIILFNTCSVREKAQEKVFS 61

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-E 141
            LGR+++LK    K+   L++ VAGCVA  EGE I+ R+P V+VV GPQT +RLP+++ +
Sbjct: 62  DLGRVKHLK----KDNPQLIIGVAGCVASQEGEAIIERAPYVDVVFGPQTLHRLPKMIVD 117

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           +   G   VD  +   +KF+ L        R  G +AF++I EGC K+C+FCVVPYTRG 
Sbjct: 118 KETTGLSQVDISFPEIEKFDHLPPA-----RVEGGSAFISIMEGCSKYCSFCVVPYTRGE 172

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR L+ V+ E   L   GV EI LLGQNVNA+RG+  +GE C F+ LL  + EI G+ 
Sbjct: 173 EFSRPLNDVLTEIANLAQQGVKEINLLGQNVNAYRGEMDNGEICDFATLLRIVHEIPGIE 232

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHPR+ SD +I+ + DL  L+ +LHLP+QSGSDR+L +M R +TA EY+ II +
Sbjct: 233 RMRFTTSHPREFSDAIIECYRDLPKLVSHLHLPIQSGSDRVLSAMKRGYTALEYKSIIRK 292

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R++RPD+ +SSDFIVGFPGET+ +F  T+ LV  I +  +F F YSPR GTP +N+ + 
Sbjct: 293 LRAIRPDLCLSSDFIVGFPGETEREFEQTLKLVKDIAFDLSFVFIYSPRPGTPAANLPDD 352

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVL 440
                K  RL  L + +  +    N + +G I   L+E    K+  +L  R+   + V  
Sbjct: 353 TPHEEKVRRLEALNEVIEAETAQINQSMLGTIQRCLVEGVSKKDPDQLQARTANNRVVNF 412

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 I  ++++ IT+ +  +L GELV
Sbjct: 413 YGTPDLINQMVELEITEARTFSLTGELV 440


>gi|229544354|ref|ZP_04433413.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus coagulans 36D1]
 gi|229325493|gb|EEN91169.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus coagulans 36D1]
          Length = 515

 Score =  474 bits (1221), Expect = e-131,   Method: Composition-based stats.
 Identities = 178/448 (39%), Positives = 267/448 (59%), Gaps = 15/448 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +F++++YGCQMN +D+  M  +F   GY    +++DAD+++LNTC IRE A  KV+  +G
Sbjct: 70  KFYIRTYGCQMNEHDTEVMAGIFMQLGYTPTETVEDADVVLLNTCAIRENAENKVFGEIG 129

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERA 143
            ++ LK        D+L+ V GC++Q E    +IL++ P V++V G    +RLP +L+ A
Sbjct: 130 HLKPLKTE----KPDMLIGVCGCMSQEESVVNKILQKHPHVDMVFGTHNIHRLPHILKEA 185

Query: 144 RFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
              K +V   +S E D  E L  V     RK  + A++ I  GCDKFCT+C+VPYTRG E
Sbjct: 186 YMSKAMVVEVWSKEGDVIESLPKV-----RKGNIKAWVNIMYGCDKFCTYCIVPYTRGKE 240

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR    ++ E R+L   G  EITLLGQNVNA  GK  D  +    DL+  L +I  + R
Sbjct: 241 RSRRPEDIIQEVRELAAKGYKEITLLGQNVNA-YGKDFDDLEYGLGDLMDDLRKIN-IPR 298

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHPRD  D LI+       L+ ++HLPVQSGS  ILK M R++T  +Y +++ +I
Sbjct: 299 IRFTTSHPRDFDDRLIEVLAKKGNLVEHIHLPVQSGSSEILKIMGRKYTREQYLELVRKI 358

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           ++  PD+A+S+D IVGFP ET++ F  T+ L  ++G+  A++F YSPR GTP + M + +
Sbjct: 359 KAAIPDVALSTDIIVGFPNETEEQFEETLSLYKEVGFETAYTFIYSPREGTPAARMKDNI 418

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVLN 441
              VK ERL  L + +     +  +   GQ++EVL+E   K   + L G +   + V   
Sbjct: 419 PMEVKKERLQRLNELVNAYSKAAMEKYEGQVVEVLVEGESKNNPEILAGYTRKNKLVNFK 478

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELVV 469
                IG +++V+IT  K  +L GE+V 
Sbjct: 479 GPKSAIGKLVQVKITKAKTWSLDGEMVA 506


>gi|77163772|ref|YP_342297.1| tRNA-i(6)A37 modification enzyme MiaB [Nitrosococcus oceani ATCC
           19707]
 gi|254435338|ref|ZP_05048845.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Nitrosococcus oceani
           AFC27]
 gi|123757951|sp|Q3JEH9|MIAB_NITOC RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|76882086|gb|ABA56767.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Nitrosococcus oceani ATCC
           19707]
 gi|207088449|gb|EDZ65721.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Nitrosococcus oceani
           AFC27]
          Length = 447

 Score =  474 bits (1221), Expect = e-131,   Method: Composition-based stats.
 Identities = 200/449 (44%), Positives = 296/449 (65%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++ ++K++GCQMN YDS RM D+   S G E  +  + A++++LNTC +REKA EKV+
Sbjct: 1   MAKKLYIKTHGCQMNEYDSSRMADVLRESHGLELTSDPEQAEVLLLNTCSVREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S LGR R LK SR     +L++ V GCVA  EGE I  R+P V++V GPQT +RLP +L 
Sbjct: 61  SQLGRWRQLKQSR----PELVIGVGGCVASQEGETIRVRAPYVDLVFGPQTIHRLPAMLT 116

Query: 142 RARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           +A+   + VVD  +   +KF++L        R  G TAF+++ EGC K+C+FCVVPYTRG
Sbjct: 117 QAKASSQPVVDLSFPEIEKFDKLP-----EPRAEGPTAFVSVMEGCSKYCSFCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            EISR    V+ E   L + GV EITLLGQNVNA+RG   +G+    + L++ ++ I+G+
Sbjct: 172 EEISRPFDDVIAEIVGLAEQGVREITLLGQNVNAYRGSIGEGDTADLALLIHYVASIEGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+TTSHP + SD LI+A  ++  L+ +LHLPVQSGSDR+L  M R HT  EY+  + 
Sbjct: 232 ERIRFTTSHPVEFSDSLIQAFAEVPALVSHLHLPVQSGSDRMLSLMKRGHTVLEYKAKLR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R VRPDI+ISSDFIVG PGET+ DF+AT+ LVD++G+  +FSF YSPR GTP +++ +
Sbjct: 292 KLRQVRPDISISSDFIVGLPGETEADFQATLALVDEVGFDHSFSFIYSPRPGTPAASLPD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVV 439
                +K ERL  LQ +LR  +++ +   V  + +VL+E+   K+   L GR+   + V 
Sbjct: 352 CTPIALKKERLAILQGRLRALEIAISRGMVDTVQQVLVERPSKKDPTMLAGRTANNRVVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
            ++    +G  + +RIT+   ++L G ++
Sbjct: 412 FSASQDMVGQFVNIRITEALPNSLRGIVL 440


>gi|76809108|ref|YP_332302.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Burkholderia
           pseudomallei 1710b]
 gi|254261221|ref|ZP_04952275.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia pseudomallei
           1710a]
 gi|123600209|sp|Q3JVV1|MIAB_BURP1 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|76578561|gb|ABA48036.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia pseudomallei
           1710b]
 gi|254219910|gb|EET09294.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia pseudomallei
           1710a]
          Length = 457

 Score =  474 bits (1221), Expect = e-131,   Method: Composition-based stats.
 Identities = 193/456 (42%), Positives = 291/456 (63%), Gaps = 18/456 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++ +VK++GCQMN YDS +M D+   ++G E+ ++ +DAD+I+ NTC +REKA EKV+
Sbjct: 1   MTKKVYVKTFGCQMNEYDSDKMVDVLNAAEGLEKTDTPEDADIILFNTCSVREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S LGR+R LK +      DLL+ V GCVA  EG  I+ R+P V++V GPQT +RLP++++
Sbjct: 61  SDLGRVRELKEA----KPDLLIGVGGCVASQEGASIVARAPYVDLVFGPQTLHRLPQMID 116

Query: 142 -RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
            R   G+  VD  +   +KF+ L        R  G +AF++I EGC K+C++CVVPYTRG
Sbjct: 117 ARRESGRAQVDITFPEIEKFDHLPPA-----RVEGPSAFVSIMEGCSKYCSYCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG--EKCTFSDLLYSLSEIK 258
            E+SR L  V+ E   L D GV E+TLLGQNVNA+RG    G  E   F+ L+  +++I 
Sbjct: 172 DEVSRPLDDVLTEVAGLADQGVREVTLLGQNVNAYRGAIAAGSAEIADFATLIEYVADIP 231

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           G+ R+RYTTSHP++ +  L+  +  +  L+ +LHLPVQ GSDRIL +M R +T  EY+ +
Sbjct: 232 GIERIRYTTSHPKEFTQRLLDVYAKVPKLVDHLHLPVQHGSDRILMAMKRGYTVLEYKSV 291

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           I ++R++RP++++S++ IVGFPGETD DF  TM LV ++ Y  +FSF YSPR GTP +N+
Sbjct: 292 IRKLRAIRPNLSLSTNIIVGFPGETDADFDKTMALVHEMSYDTSFSFIYSPRPGTPAANL 351

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQS 437
            +     +K +RL  LQ  + E     + + +G++  +L+E    K+  +L GR+   + 
Sbjct: 352 ADDTPRELKLKRLQHLQATIEENVARISQSMLGKVERILVEGPSRKDPNELAGRTENNRV 411

Query: 438 VVLNSK----NHNIGDIIKVRITDVKISTLYGELVV 469
           V   +        IG +I V+I      +L GELV+
Sbjct: 412 VNFPAPSAAHPRLIGQMIDVKINHAYPHSLRGELVL 447


>gi|254479226|ref|ZP_05092571.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Carboxydibrachium
           pacificum DSM 12653]
 gi|214034827|gb|EEB75556.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Carboxydibrachium
           pacificum DSM 12653]
          Length = 471

 Score =  474 bits (1221), Expect = e-131,   Method: Composition-based stats.
 Identities = 184/446 (41%), Positives = 282/446 (63%), Gaps = 15/446 (3%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           + +++YGCQMNV+DS ++  M    GY+    ++ AD+++ NTC +RE A  +V   + +
Sbjct: 33  YHIETYGCQMNVHDSEKLAGMLEEMGYKYTEDLEKADVLLFNTCAVREHAEVRVLGRVSQ 92

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           I+ LKN       +L++ ++GC+ Q +   E I  + P V++V G    Y+ PELL +A 
Sbjct: 93  IKELKNR----NPNLIIGISGCMMQEKHIVEAIREKYPHVDIVFGTHNIYKFPELLWQAL 148

Query: 145 FGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             + +V+D   + ++  E L I      R   + A++ I  GC+ FCT+C+VPYTRG E 
Sbjct: 149 NSRVQVIDVIENTQNVIEGLPI-----RRDSNLKAWVNIIYGCNNFCTYCIVPYTRGREK 203

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR    ++ E ++L + G  EITLLGQNVN+  GK L G+   F+ LLY L++IKG+ R+
Sbjct: 204 SRRPEDIIAEVKELAEKGYKEITLLGQNVNS-YGKDLGGD-INFAKLLYMLNDIKGIERI 261

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+ TSHP+D+SD LI A  DLD +  +LHLPVQ+GS++ILK MNRR+T   Y +IID++R
Sbjct: 262 RFMTSHPKDISDELIYAMRDLDKVCEHLHLPVQAGSNKILKRMNRRYTREHYLEIIDKVR 321

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           +  PDIAI++D IVGFPGET++DF  T+DLV+++ +  A++F YS R GTP ++M +QVD
Sbjct: 322 ANIPDIAITTDIIVGFPGETEEDFLQTLDLVERVRFDGAYTFMYSKRAGTPAASMPDQVD 381

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVLNS 442
           + VK +RL+ L +   +  +  +    G+++EVLIE   K +  KL  R+   + V    
Sbjct: 382 DEVKKDRLIRLIELQNKISLEKSAELKGKVVEVLIEGVSKRDPNKLTSRTRTNKVVHFIG 441

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
               IG +  V+IT+ K  T+ GELV
Sbjct: 442 DESLIGKLANVKITETKAWTMQGELV 467


>gi|295399898|ref|ZP_06809879.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|312111583|ref|YP_003989899.1| RNA modification enzyme, MiaB family [Geobacillus sp. Y4.1MC1]
 gi|294978301|gb|EFG53898.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|311216684|gb|ADP75288.1| RNA modification enzyme, MiaB family [Geobacillus sp. Y4.1MC1]
          Length = 523

 Score =  474 bits (1221), Expect = e-131,   Method: Composition-based stats.
 Identities = 179/448 (39%), Positives = 262/448 (58%), Gaps = 15/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++F++++YGCQMN +D+  M  +F   GYE  +  +DA++I+LNTC IRE A  KV+  +
Sbjct: 80  RKFYIRTYGCQMNEHDTEVMAGIFMELGYEPTDRPEDANVILLNTCAIRENAENKVFGEI 139

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G ++ LK     +  DLL+ V GC++Q E    +IL++   V+++ G    +RLP +L  
Sbjct: 140 GHLKQLKQ----DNPDLLLGVCGCMSQEESVVNKILKQYQYVDMIFGTHNIHRLPHILHE 195

Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           A   K +V   +S E D  E L        RK  + A++ I  GCDKFCT+C+VPYTRG 
Sbjct: 196 AYMSKEMVVEVWSKEGDVIENLP-----KARKGNIKAWVNIMYGCDKFCTYCIVPYTRGK 250

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR    ++ E R L   G  E+TLLGQNVNA  GK     K    DL+  L +I  + 
Sbjct: 251 ERSRRPEDIIQEVRHLAAQGYKEVTLLGQNVNA-YGKDFTDMKYGLGDLMDELRKID-IA 308

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHPRD  D LI+       L+ ++HLPVQSGS  ILK M R++T  EY +++ +
Sbjct: 309 RIRFTTSHPRDFDDRLIEVLAKRGNLVEHIHLPVQSGSTEILKLMGRKYTREEYLELVRK 368

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I++  PD+A+++D IVGFP ET++ F  T+ L  ++ +  A++F YSPR GTP + M++ 
Sbjct: 369 IKAAIPDVALTTDIIVGFPNETEEQFEETLSLYREVEFDSAYTFIYSPREGTPAAKMVDN 428

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVL 440
           V   VK ERL  L   + E          G+++EVL+E   K     L G +   + V  
Sbjct: 429 VPMEVKKERLHRLNALVNEISARKMKEYEGKVVEVLVEGESKNNPDVLAGYTRKNKLVNF 488

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 IG ++KVRIT+ K  TL GE+V
Sbjct: 489 IGPKSAIGKLVKVRITEAKTWTLNGEMV 516


>gi|228992460|ref|ZP_04152388.1| hypothetical protein bpmyx0001_32010 [Bacillus pseudomycoides DSM
           12442]
 gi|229000596|ref|ZP_04160136.1| hypothetical protein bmyco0003_51290 [Bacillus mycoides Rock3-17]
 gi|229006018|ref|ZP_04163707.1| hypothetical protein bmyco0002_29390 [Bacillus mycoides Rock1-4]
 gi|228755217|gb|EEM04573.1| hypothetical protein bmyco0002_29390 [Bacillus mycoides Rock1-4]
 gi|228759151|gb|EEM08157.1| hypothetical protein bmyco0003_51290 [Bacillus mycoides Rock3-17]
 gi|228767281|gb|EEM15916.1| hypothetical protein bpmyx0001_32010 [Bacillus pseudomycoides DSM
           12442]
          Length = 509

 Score =  474 bits (1221), Expect = e-131,   Method: Composition-based stats.
 Identities = 184/450 (40%), Positives = 269/450 (59%), Gaps = 15/450 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
             ++F++++YGCQMN +D+  M  +F + GYE   S +DAD+I+LNTC IRE A  KV+ 
Sbjct: 64  AGRKFYIRTYGCQMNEHDTEVMAGIFTTLGYEPTFSTEDADVILLNTCAIRENAENKVFG 123

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELL 140
            LG ++ LK        DLL+ V GC++Q E    +I++++  V++V G    +RLP +L
Sbjct: 124 ELGHLKPLKQR----NPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYIL 179

Query: 141 ERARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           + A F K  V   +S E D  E L  V     R+  + A++ I  GCDKFCT+C+VPYTR
Sbjct: 180 KDAMFSKATVVEVWSKEGDVIENLPKV-----RRGDIKAWVNIMYGCDKFCTYCIVPYTR 234

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G E SR    +++E R L  NG  EITLLGQNVNA  GK  +  +    DL+  L +I  
Sbjct: 235 GKERSRRPEDIINEIRHLAANGYKEITLLGQNVNA-YGKDFEDLEYGLGDLMDELRKID- 292

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           + R+R+TTSHPRD  D LI+  G    L+ ++HLPVQSGS  +LK M R+++   Y +++
Sbjct: 293 IARVRFTTSHPRDFDDHLIEVLGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELV 352

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            +I+   P+  +++D IVGFP ETD+ F  TM L  ++G+  AF+F YSPR GTP + M 
Sbjct: 353 RKIKEAIPNAVLTTDIIVGFPNETDEQFEETMSLYREVGFDSAFTFIYSPREGTPAAKMK 412

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSV 438
           + V   VK ERL  L   + E  +  N    GQI+EVL++   K     L G +   + V
Sbjct: 413 DNVPMEVKKERLQRLNALVNEYSMEKNKRYKGQIVEVLVDGESKNNPDVLAGYTRTNKLV 472

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468
              +  + IG ++KV++T+ K  +L GELV
Sbjct: 473 NFVAPKYAIGQLVKVKVTEAKTWSLNGELV 502


>gi|209517500|ref|ZP_03266340.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia sp. H160]
 gi|209502033|gb|EEA02049.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia sp. H160]
          Length = 461

 Score =  474 bits (1220), Expect = e-131,   Method: Composition-based stats.
 Identities = 195/460 (42%), Positives = 294/460 (63%), Gaps = 22/460 (4%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++ +VK++GCQMN YDS +M D+   ++G  + ++ +DAD+I+ NTC +REKA EKV+
Sbjct: 1   MTKKVYVKTFGCQMNEYDSDKMVDVLGAAEGLVKTDTPEDADVILFNTCSVREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S LGR+R LK++      DL++ V GCVA  EG  I+ R+P V++V GPQT +RLP++++
Sbjct: 61  SELGRVRELKDA----NPDLIIGVGGCVASQEGASIVARAPYVDIVFGPQTLHRLPQMID 116

Query: 142 -RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
            R   G+  VD  +   +KF+ L        R  G +AF++I EGC K+C++CVVPYTRG
Sbjct: 117 VRRASGRAQVDISFPEIEKFDHLPPA-----RVEGPSAFVSIMEGCSKYCSYCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD------GEKCTFSDLLYSL 254
            E+SR L  V+ E   L D GV E+TLLGQNVNA+RGK          E   F+ L+  +
Sbjct: 172 EEVSRPLDDVLTEIAGLADQGVREVTLLGQNVNAYRGKFGGALTIGSTEIADFATLIEYV 231

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
           ++I G+ R+RYTTSHP++ +  LI  +  +  L+ +LHLPVQ GSDRIL +M R +T  E
Sbjct: 232 ADIPGIERIRYTTSHPKEFTQRLIDTYAKVPKLVSHLHLPVQHGSDRILMAMKRGYTVLE 291

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
           Y+ +I ++R++RPD+++S+D IVGFPGETD+DF   M LV+++ Y  +FSF YSPR GTP
Sbjct: 292 YKSVIRKLRAIRPDLSLSTDMIVGFPGETDEDFAKMMALVEEMKYDTSFSFIYSPRPGTP 351

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSP 433
            +N+ +     VK +RL  LQ  + E     ++A VG++  +L+E+   K+  +L GR+ 
Sbjct: 352 AANLHDDTPREVKLKRLQHLQATIEENVQRISNAMVGKVERILVERPARKDPNELAGRTE 411

Query: 434 WLQSVVLNSK----NHNIGDIIKVRITDVKISTLYGELVV 469
             + V   +        IG ++ V+I      +L GELV+
Sbjct: 412 NNRVVNFPAPVASHARLIGQMVDVKIVHAYPHSLRGELVM 451


>gi|326386707|ref|ZP_08208328.1| tRNA-i(6)A37 modification enzyme MiaB [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326208760|gb|EGD59556.1| tRNA-i(6)A37 modification enzyme MiaB [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 445

 Score =  474 bits (1220), Expect = e-131,   Method: Composition-based stats.
 Identities = 237/451 (52%), Positives = 312/451 (69%), Gaps = 12/451 (2%)

Query: 18  VDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA 77
           +     P+ F VKS+GCQMNVYD  RM ++  +QG   V+  + ADL+VLNTCHIREKA 
Sbjct: 1   MSSDTTPRTFHVKSFGCQMNVYDGERMAELLAAQGMTAVDEREAADLVVLNTCHIREKAT 60

Query: 78  EKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLP 137
           EKVYS +GR+R       ++G + L+ VAGCVAQAEGEEI+ R+P V VVVGPQ Y+RLP
Sbjct: 61  EKVYSDIGRLRR------EDGSNPLIAVAGCVAQAEGEEIMTRAPQVRVVVGPQAYHRLP 114

Query: 138 ELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197
           +++  A  G R  +TD   E KF  L        RK G +AFLTIQEGCDKFCT+CVVPY
Sbjct: 115 DMVAAAASGTRETETDMPAEAKFAALP-----QRRKSGPSAFLTIQEGCDKFCTYCVVPY 169

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257
           TRG EISR  + +V+EAR L++ G  EITLLGQNVNAW G+   G     + L   L+ +
Sbjct: 170 TRGAEISRPYADLVEEARLLVEGGAREITLLGQNVNAWHGEDDKGRTIGLAGLAAELARL 229

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
             L R+RYTTSHP DM D LI+AHG  D LMP+LHLPVQSG+DR+LK+MNR H+A  Y +
Sbjct: 230 PDLARIRYTTSHPADMDDALIEAHGTNDKLMPFLHLPVQSGNDRVLKAMNRSHSAESYLK 289

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
           II+R+R+ RPDIA+S DFIVGFPGET+ +F  T+ L+D   YAQAFSFKYSPR GTP + 
Sbjct: 290 IIERVRAARPDIALSGDFIVGFPGETEAEFADTLALIDATRYAQAFSFKYSPRPGTPAAT 349

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQS 437
           M +Q+   +  +RL  LQ  +   Q++FN A VG+  +VLIE+ G++ G+ +G+SPWLQS
Sbjct: 350 MDDQIAAEIMDDRLKRLQTAITRDQLAFNRASVGKRCQVLIERRGRQPGQWLGKSPWLQS 409

Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           V   +    IGD+++V + +   +++ G  +
Sbjct: 410 VHF-TDEAAIGDLVEVELIEAGPNSIAGRRI 439


>gi|254437886|ref|ZP_05051380.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Octadecabacter
           antarcticus 307]
 gi|198253332|gb|EDY77646.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Octadecabacter
           antarcticus 307]
          Length = 441

 Score =  474 bits (1220), Expect = e-131,   Method: Composition-based stats.
 Identities = 236/449 (52%), Positives = 318/449 (70%), Gaps = 13/449 (2%)

Query: 19  DQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAE 78
           D    P++ F+K+YGCQMNVYDS RM +   +QGY   +   DAD+I+LNTCHIREKAAE
Sbjct: 5   DSGPSPKKLFIKTYGCQMNVYDSERMAESLGTQGYVTTDVAADADMILLNTCHIREKAAE 64

Query: 79  KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPE 138
           KVYS LGR++ LK +      DL + V GCVAQAEG EI+RR P+V++VVGPQ+Y+RLP 
Sbjct: 65  KVYSELGRLKPLKAN----KPDLKIGVTGCVAQAEGAEIMRRQPMVDLVVGPQSYHRLPS 120

Query: 139 LLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
           + +    G++ +DTD+  +DKFE L         KRG  AFLT+QEGCDKFC FCVVPYT
Sbjct: 121 MEQAVARGEKALDTDFPEDDKFETLK---SRSKAKRGPCAFLTVQEGCDKFCAFCVVPYT 177

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258
           RG E+SR   +++ EA++L++ GV EITLLGQNVNA+ G          + L++ L ++ 
Sbjct: 178 RGSEVSRPADRIIREAQELVETGVREITLLGQNVNAYHGHAG-----GLAGLIWDLDKVD 232

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           GL R+R+TTSHP DM D LI+AHG  D LMPYLHLPVQSGSD++LK+MNR+HT  +Y  +
Sbjct: 233 GLERIRFTTSHPNDMDDALIEAHGTCDKLMPYLHLPVQSGSDKVLKAMNRKHTRDQYFVL 292

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           I+RIR+ RPD+ +S DFIVGFPGET+ DF  TMDLV  +GY QA+SFKYS R GTP +  
Sbjct: 293 IERIRAARPDLLLSGDFIVGFPGETEADFEDTMDLVRTVGYGQAYSFKYSTRPGTPAAER 352

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSV 438
             QVDE+VK +RL  LQ  L +QQ     + +G+ ++VL EK G+E G+++G+S +L +V
Sbjct: 353 A-QVDEDVKLDRLHRLQALLGDQQREIQTSMIGRTVKVLFEKKGRESGQMIGKSEYLHAV 411

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGEL 467
             ++ +  +GD+  VRI   + ++L GE+
Sbjct: 412 FADTTDVEVGDLRDVRIVKSERNSLGGEI 440


>gi|138894823|ref|YP_001125276.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Geobacillus
           thermodenitrificans NG80-2]
 gi|134266336|gb|ABO66531.1| tRNA 2-methylthioadenosine synthase [Geobacillus
           thermodenitrificans NG80-2]
          Length = 580

 Score =  474 bits (1220), Expect = e-131,   Method: Composition-based stats.
 Identities = 182/447 (40%), Positives = 262/447 (58%), Gaps = 15/447 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++F++++YGCQMN +D+  M  +F + GYE  +  +DA++I+LNTC IRE A  KV+  L
Sbjct: 137 RKFYIRTYGCQMNEHDTEVMAGIFMALGYEPTDRPEDANVILLNTCAIRENAENKVFGEL 196

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQ--AEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
           G ++ LK        DLL+ V GC++Q  A   +IL++   V+++ G    +RLP +L  
Sbjct: 197 GYLKPLKT----TNPDLLLGVCGCMSQEEAVVNKILKQYQYVDLIFGTHNIHRLPYILHE 252

Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           A   K +V   +S E D  E L  V     RK  + A++ I  GCDKFCT+C+VPYTRG 
Sbjct: 253 AYMSKEMVVEVWSKEGDVVENLPKV-----RKGNIKAWVNIMYGCDKFCTYCIVPYTRGK 307

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR    ++ E R+L   G  EITLLGQNVNA  GK  +  +    DL+  L +I  + 
Sbjct: 308 ERSRRPEDIIQEVRQLAAQGYKEITLLGQNVNA-YGKDFNDIQYGLGDLMDELRKID-IA 365

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHPRD  D LI+       L+ ++HLPVQSGS  ILK M R++T  EY +++ +
Sbjct: 366 RIRFTTSHPRDFDDRLIEVLAKRGNLVEHIHLPVQSGSTEILKMMGRKYTREEYLELVRK 425

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I++  PD+A+++D IVGFP ETD+ F  T+ L  ++ +  A++F YSPR GTP + M + 
Sbjct: 426 IKAAIPDVALTTDIIVGFPNETDEQFEETLSLYREVEFDSAYTFIYSPREGTPAAKMNDN 485

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVL 440
           V   VK ERL  L   ++E          GQ++EVL+E   K     L G +   + V  
Sbjct: 486 VPMEVKKERLQRLNALVQEIAAKKMKQYEGQVVEVLVEGESKTNPDVLAGYTRKNKLVHF 545

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGEL 467
                 IG ++ VRIT  K  TL GEL
Sbjct: 546 VGPKSLIGQLVNVRITQAKTWTLTGEL 572


>gi|17545250|ref|NP_518652.1| hypothetical protein RSc0531 [Ralstonia solanacearum GMI1000]
 gi|81506472|sp|Q8Y206|MIAB_RALSO RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|17427541|emb|CAD14059.1| conserved hypothetical protein [Ralstonia solanacearum GMI1000]
          Length = 457

 Score =  474 bits (1220), Expect = e-131,   Method: Composition-based stats.
 Identities = 204/455 (44%), Positives = 289/455 (63%), Gaps = 20/455 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ F+K++GCQMN YDS +M D+   ++G    ++ +DAD+I+ NTC +REKA EKV+S 
Sbjct: 2   KKVFIKTFGCQMNEYDSDKMADVLNAAEGLVPTDTPEDADVILFNTCSVREKAQEKVFSD 61

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE-R 142
           LGR++ LK        DL+V V GCVA  EG  I+ R+P V+VV GPQT +RLPEL++ R
Sbjct: 62  LGRVKALKAR----NPDLVVGVGGCVASQEGASIVARAPYVDVVFGPQTLHRLPELIDAR 117

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            R G+  VD  +   +KF+ L        R  G +AF++I EGC K+C++CVVPYTRG E
Sbjct: 118 RRTGRPQVDVSFPEIEKFDHLPPA-----RVEGPSAFVSIMEGCSKYCSYCVVPYTRGEE 172

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-GLDGEKCTFSDLLYSLSEIKGLV 261
           +SR    V+ E   L + GV E+TLLGQNVNA+ GK G   E+  F+ LL  ++EI G+ 
Sbjct: 173 VSRPFEDVLAEVAGLAEQGVREVTLLGQNVNAYIGKMGGTSERADFALLLEYVAEIPGIE 232

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+RYTTSHP++ +  LI+A+     L+ +LHLPVQ GSDRIL +M R +T  EY+ II +
Sbjct: 233 RIRYTTSHPKEFTARLIEAYATNRKLVDHLHLPVQHGSDRILMAMKRGYTVLEYKSIIRK 292

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R++RPDI+I++DFIVGFPGETD DF  TMDLV +IGY  +FSF YSPR GTP +N+ + 
Sbjct: 293 LRAIRPDISIATDFIVGFPGETDADFAKTMDLVHEIGYDNSFSFIYSPRPGTPAANLHDD 352

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVL 440
               VK ERL  LQ  +       ++  VG +  +L+E    K+  +L GR+   + V  
Sbjct: 353 TPHAVKLERLKHLQATIDANMARISEGMVGSVQRILVEGPSRKDPSELHGRTENNRVVNF 412

Query: 441 NSKNH-------NIGDIIKVRITDVKISTLYGELV 468
              +         +G ++ VRI      +L G++V
Sbjct: 413 ALPDLPQARRDQLVGQMLDVRIVHAYPHSLRGDVV 447


>gi|307545979|ref|YP_003898458.1| bifunctional enzyme involved in thiolation and methylation of tRNA
           [Halomonas elongata DSM 2581]
 gi|307218003|emb|CBV43273.1| bifunctional enzyme involved in thiolation and methylation of tRNA
           [Halomonas elongata DSM 2581]
          Length = 447

 Score =  474 bits (1220), Expect = e-131,   Method: Composition-based stats.
 Identities = 199/450 (44%), Positives = 292/450 (64%), Gaps = 14/450 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++ F+K++GCQMN YDS RM D+   S   E  +   DAD+I+LNTC IREKA EKV+
Sbjct: 1   MAKKLFIKTHGCQMNEYDSARMADLLGESHQLELTDDEHDADVILLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR + LK++      DL++ V GCVA  EGE + +R+P V++V GPQT +R+P +L+
Sbjct: 61  HQLGRWKKLKDA----NPDLVIGVGGCVASQEGEALRKRAPQVDMVFGPQTLHRVPAMLD 116

Query: 142 RARFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
             +  K  VVD  +   +KF+ L           G TAF+++ EGC K+CTFCVVPYTRG
Sbjct: 117 ARQDDKISVVDVTFPEIEKFDHLP-----KPTSDGATAFVSVMEGCSKYCTFCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR    V+DE   L D GV EI LLGQNVNA+RG+   G++   ++L+  ++ + G+
Sbjct: 172 EEVSRPFEAVMDEVIHLADQGVREINLLGQNVNAYRGENQLGDEIDLAELISCVAAVDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+TTSHP + SD LI+A+G++  L+ +LHLPVQ+GSD +L +M R HT  EY   ++
Sbjct: 232 DRIRFTTSHPVEFSDSLIEAYGEIPELVSHLHLPVQAGSDNVLAAMKRGHTVEEYVDKLE 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           RIR++RPDI+ SSDFI+GFPGET+ DF +TMDL+ +IG+  +FSF YS R GTP + + +
Sbjct: 292 RIRALRPDISFSSDFIIGFPGETEADFESTMDLIHRIGFDVSFSFVYSARPGTPAAALPD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVV 439
           +  E VK +RL  LQ+++ +Q +  +   VG    +L+     K+ G+L GR+   + V 
Sbjct: 352 ETPEAVKKQRLAILQERINQQAMQISRRMVGTTQRILVTGFSPKDPGQLSGRTENNRVVN 411

Query: 440 LNSKN--HNIGDIIKVRITDVKISTLYGEL 467
             + N    IG  + V IT+   ++L G+L
Sbjct: 412 FRAPNPTELIGYFVDVEITEALPNSLRGDL 441


>gi|229012956|ref|ZP_04170121.1| hypothetical protein bmyco0001_33940 [Bacillus mycoides DSM 2048]
 gi|228748210|gb|EEL98070.1| hypothetical protein bmyco0001_33940 [Bacillus mycoides DSM 2048]
          Length = 509

 Score =  474 bits (1220), Expect = e-131,   Method: Composition-based stats.
 Identities = 184/448 (41%), Positives = 271/448 (60%), Gaps = 15/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++F++++YGCQMN +D+  M  +F + GYE   S ++AD+I+LNTC IRE A  KV+  L
Sbjct: 66  RKFYIRTYGCQMNEHDTEVMAGIFTTLGYEPTFSTEEADVILLNTCAIRENAENKVFGEL 125

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G +++LK    +   DL++ V GC++Q E    +I++++  V++V G    +RLP +L+ 
Sbjct: 126 GHLKSLK----RRNPDLIIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKD 181

Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           A F K  V   +S E D  E L  V     R+  + A++ I  GCDKFCT+C+VPYTRG 
Sbjct: 182 AMFSKETVVEVWSKEGDVIENLPKV-----RRGDIKAWVNIMYGCDKFCTYCIVPYTRGK 236

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR    ++ E R L  NG  EITLLGQNVNA  GK  +  +    DL+  L +I  + 
Sbjct: 237 ERSRRPEDIIKEIRHLAANGYKEITLLGQNVNA-YGKDFEDIQYGLGDLMDELRKID-IA 294

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHPRD  + LI   G    L+ ++HLPVQSGS  +LK M R+++   Y +++ +
Sbjct: 295 RIRFTTSHPRDFDNHLIDVLGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRK 354

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I+   P+  +++D IVGFP ETD+ F  TM L  ++G+  AF+F YSPR GTP + M + 
Sbjct: 355 IKETIPNAVLTTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMQDN 414

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440
           V   VK ERL  L   + E  V+ N   +GQI+EVL+E   K   + L G +   + V  
Sbjct: 415 VPMEVKKERLQRLNTLVNEYAVNKNKRYIGQIVEVLVEGESKNNPEVLAGYTRTNKLVNF 474

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
            +    IG ++KV+IT+ K  +L GELV
Sbjct: 475 VASKSLIGQLVKVKITEAKTWSLNGELV 502


>gi|170693394|ref|ZP_02884553.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia graminis
           C4D1M]
 gi|170141549|gb|EDT09718.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia graminis
           C4D1M]
          Length = 461

 Score =  474 bits (1220), Expect = e-131,   Method: Composition-based stats.
 Identities = 192/456 (42%), Positives = 292/456 (64%), Gaps = 18/456 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++ +VK++GCQMN YDS +M D+   ++G  + ++ +DAD+I+ NTC +REKA EKV+
Sbjct: 1   MTKKVYVKTFGCQMNEYDSDKMVDVLGAAEGLVKTDTPEDADVILFNTCSVREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S LGR+R LK +      +L++ V GCVA  EG  I+ R+P V++V GPQT +RLP++++
Sbjct: 61  SDLGRVRELKEA----NPNLIIGVGGCVASQEGASIVARAPYVDLVFGPQTLHRLPQMID 116

Query: 142 RARF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           + R  G+  VD  +   +KF+ L        R  G +AF++I EGC K+C++CVVPYTRG
Sbjct: 117 KRRESGRAQVDISFPEIEKFDHLPPA-----RVEGPSAFVSIMEGCSKYCSYCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG--EKCTFSDLLYSLSEIK 258
            E+SR L  V+ E   L D GV E+TLLGQNVNA+RG    G  E   F+ L+  +++I 
Sbjct: 172 EEVSRPLDDVLTEIAGLADQGVREVTLLGQNVNAYRGALTVGSSEIADFATLIEYVADIP 231

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           G+ R+RYTTSHP++ +  LI  +  +  L+ +LHLPVQ GSDRIL +M R +T  EY+ +
Sbjct: 232 GIERIRYTTSHPKEFTQRLIDTYAKVPKLVSHLHLPVQHGSDRILMAMKRGYTVLEYKSV 291

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           I ++R++RPD+++S+D IVGFPGET++DF   M LV ++ Y  +FSF YSPR GTP +N+
Sbjct: 292 IRKLRAIRPDLSLSTDMIVGFPGETEEDFDKMMALVHEMKYDTSFSFIYSPRPGTPAANL 351

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQS 437
            +     VK +RL  LQ  + E     +D+ VG++  +L+E+   K+  +L GR+   + 
Sbjct: 352 HDDTPREVKLKRLQHLQATIEENVQRISDSMVGKVERILVERPARKDPNELAGRTENNRV 411

Query: 438 VVLNSK----NHNIGDIIKVRITDVKISTLYGELVV 469
           V   +         G ++ V+I      +L GELV+
Sbjct: 412 VNFPAPLASHARLTGQMVDVKIVKAYPHSLRGELVL 447


>gi|295677633|ref|YP_003606157.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia sp.
           CCGE1002]
 gi|295437476|gb|ADG16646.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia sp.
           CCGE1002]
          Length = 461

 Score =  474 bits (1220), Expect = e-131,   Method: Composition-based stats.
 Identities = 195/460 (42%), Positives = 293/460 (63%), Gaps = 22/460 (4%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++ +VK++GCQMN YDS +M D+   ++G  + ++ +DAD+I+ NTC +REKA EKV+
Sbjct: 1   MTKKVYVKTFGCQMNEYDSDKMVDVLGAAEGLVKTDTPEDADVILFNTCSVREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL- 140
           S LGR+R LK++      +L++ V GCVA  EG  I+ R+P V++V GPQT +RLP+++ 
Sbjct: 61  SDLGRVRELKDA----NPNLIIGVGGCVASQEGASIVARAPYVDIVFGPQTLHRLPQMID 116

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           ER   G+  VD  +   +KF+ L        R  G +AF++I EGC K+C++CVVPYTRG
Sbjct: 117 ERRASGRAQVDISFPEIEKFDHLPPA-----RVEGPSAFVSIMEGCSKYCSYCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD------GEKCTFSDLLYSL 254
            E+SR L  V+ E   L D GV E+TLLGQNVNA+RGK          E   F+ L+  +
Sbjct: 172 EEVSRPLDDVLTEIAGLADQGVREVTLLGQNVNAYRGKFGGALTLGSTEIADFATLIEYV 231

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
           ++I G+ R+RYTTSHP++ +  LI  +  +  L+ +LHLPVQ GSDRIL +M R +T  E
Sbjct: 232 ADIPGIERIRYTTSHPKEFTQRLIDTYAKVPKLVSHLHLPVQHGSDRILMAMKRGYTVLE 291

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
           Y+ +I ++R++RPD+++S+D IVGFPGET++DF   M LV+++ Y  +FSF YSPR GTP
Sbjct: 292 YKSVIRKLRAIRPDLSLSTDMIVGFPGETEEDFAKMMALVEEMKYDTSFSFIYSPRPGTP 351

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSP 433
            +N+ +     VK +RL  LQ  + E     +DA VG +  +L+E+   K+  +L GR+ 
Sbjct: 352 AANLHDDTPREVKLKRLQHLQATIEENVQRISDAMVGNVERILVERPARKDPNELAGRTE 411

Query: 434 WLQSVVLNSK----NHNIGDIIKVRITDVKISTLYGELVV 469
             + V   +        IG ++ V+I      +L GELV+
Sbjct: 412 NNRVVNFPAPVASHARLIGQMVDVKIVHAYPHSLRGELVM 451


>gi|229134580|ref|ZP_04263390.1| hypothetical protein bcere0014_34890 [Bacillus cereus BDRD-ST196]
 gi|229168512|ref|ZP_04296235.1| hypothetical protein bcere0007_34690 [Bacillus cereus AH621]
 gi|228614918|gb|EEK72020.1| hypothetical protein bcere0007_34690 [Bacillus cereus AH621]
 gi|228648841|gb|EEL04866.1| hypothetical protein bcere0014_34890 [Bacillus cereus BDRD-ST196]
          Length = 509

 Score =  474 bits (1220), Expect = e-131,   Method: Composition-based stats.
 Identities = 185/450 (41%), Positives = 271/450 (60%), Gaps = 15/450 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
             ++F++++YGCQMN +D+  M  +F + GYE   S ++AD+I+LNTC IRE A  KV+ 
Sbjct: 64  AGRKFYIRTYGCQMNEHDTEVMAGIFTTLGYEPTFSTEEADVILLNTCAIRENAENKVFG 123

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELL 140
            LG +++LK    +   DL++ V GC++Q E    +I++++  V++V G    +RLP +L
Sbjct: 124 ELGHLKSLK----RRNPDLIIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYIL 179

Query: 141 ERARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           + A F K  V   +S E D  E L  V     R+  + A++ I  GCDKFCT+C+VPYTR
Sbjct: 180 KDAMFSKETVVEVWSKEGDVIENLPKV-----RRGDIKAWVNIMYGCDKFCTYCIVPYTR 234

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G E SR    ++ E R L  NG  EITLLGQNVNA  GK  +  +    DL+  L +I  
Sbjct: 235 GKERSRRPEDIIKEIRHLAANGYREITLLGQNVNA-YGKDFEDIQYGLGDLMDELRKID- 292

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           + R+R+TTSHPRD  D LI   G    L+ ++HLPVQSGS  +LK M R+++   Y +++
Sbjct: 293 IARIRFTTSHPRDFDDHLIDVLGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELV 352

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            +I+   P+  +++D IVGFP ETD+ F  TM L  ++G+  AF+F YSPR GTP + M 
Sbjct: 353 RKIKETIPNAVLTTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMQ 412

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSV 438
           + V   VK ERL  L   + E  V+ N   +GQI+EVL+E   K   + L G +   + V
Sbjct: 413 DNVPMEVKKERLQRLNTLVNEYAVNKNKRYIGQIVEVLVEGESKNNPEVLAGYTRTNKLV 472

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468
              +    IG ++KV+IT+ K  +L GELV
Sbjct: 473 NFVASKSLIGQLVKVKITEAKTWSLNGELV 502


>gi|167856488|ref|ZP_02479203.1| hypothetical protein HPS_09340 [Haemophilus parasuis 29755]
 gi|167852383|gb|EDS23682.1| hypothetical protein HPS_09340 [Haemophilus parasuis 29755]
          Length = 463

 Score =  474 bits (1220), Expect = e-131,   Method: Composition-based stats.
 Identities = 205/436 (47%), Positives = 289/436 (66%), Gaps = 12/436 (2%)

Query: 36  MNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSR 94
           MN YDS +M D+  S  G E   + +DAD+++LNTC IREKA EKV+S LGR +N K   
Sbjct: 1   MNEYDSSKMADLLNSTHGLELTENPEDADILLLNTCSIREKAQEKVFSQLGRWKNWK--- 57

Query: 95  IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR-VVDTD 153
            K+  DL++ V GCVA  EGE I  R+P V++V GPQT +RLPE++ + R GK  VVD  
Sbjct: 58  -KDKPDLIIGVGGCVASQEGEHIRERAPFVDIVFGPQTLHRLPEMINQIRGGKSSVVDIS 116

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           +   +KF+RL        R  G TAF++I EGC+K+C+FCVVPYTRG E+SR +  V+ E
Sbjct: 117 FPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCSFCVVPYTRGEEVSRPVDDVLFE 171

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
             +L + GV E+ LLGQNVNA+RG+  DG  C+F++LL  ++ I G+ R+RYTTSHP + 
Sbjct: 172 IAQLAEQGVREVNLLGQNVNAYRGETFDGGICSFAELLRLVASIDGIDRVRYTTSHPIEF 231

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
           +D +I+ + D   L+ +LHLP+QSGSDR+L  M R HTA EY+ II ++R  RPDI ISS
Sbjct: 232 TDDIIEVYKDTPELVSFLHLPIQSGSDRVLTMMKRNHTALEYKAIIRKLREARPDIQISS 291

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLC 393
           DFIVGFPGET  DF  TM +++++ +  +FSF YS R GTP +++ + V E+ K ERL  
Sbjct: 292 DFIVGFPGETAQDFEQTMKIIEQVNFDMSFSFIYSARPGTPAADLPDDVTEDEKKERLYR 351

Query: 394 LQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNSKNHNIGDIIK 452
           LQ+++  Q + F+ A +G    +L+E   K+   +L GR+   + V      + IG  + 
Sbjct: 352 LQQRINNQAMQFSRAMLGTEQRILVEGPSKKDIMELTGRTESNRIVNFQGTPNMIGKFVD 411

Query: 453 VRITDVKISTLYGELV 468
           V+ITDV  ++L GE+V
Sbjct: 412 VKITDVYTNSLRGEVV 427


>gi|146308794|ref|YP_001189259.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Pseudomonas mendocina
           ymp]
 gi|145576995|gb|ABP86527.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Pseudomonas mendocina
           ymp]
          Length = 459

 Score =  474 bits (1220), Expect = e-131,   Method: Composition-based stats.
 Identities = 204/456 (44%), Positives = 288/456 (63%), Gaps = 13/456 (2%)

Query: 17  IVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREK 75
                 + ++ +++++GCQMN YDS RM D+    Q  E     ++AD+I+LNTC IREK
Sbjct: 7   TTSDSAMTKKLYIETHGCQMNEYDSSRMVDLLGEHQALEVTEKPEEADVILLNTCSIREK 66

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135
           A +KV+S LGR R LK +      DL++ V GCVA  EG  I  R+P V+VV GPQT +R
Sbjct: 67  AQDKVFSQLGRWRELKQA----NPDLVIGVGGCVASQEGAAIRDRAPYVDVVFGPQTLHR 122

Query: 136 LPELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCV 194
           LPE+++ AR  K   VD  +   +KF+RL        R  G +AF+++ EGC K+CTFCV
Sbjct: 123 LPEMIDAARTTKTAQVDISFPEIEKFDRLP-----EPRVDGPSAFVSVMEGCSKYCTFCV 177

Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL 254
           VPYTRG E+SR L+ V+ E  +L D GV E+TLLGQNVN +RG   DG    F++LL+++
Sbjct: 178 VPYTRGEEVSRPLADVLLEITQLTDKGVKEVTLLGQNVNGYRGATPDGRIADFAELLHAV 237

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
           + + G+ R+RYTTSHP + SD +I AH ++  L+ YLHLPVQSGSDRIL +M R HTA E
Sbjct: 238 AALDGIERIRYTTSHPLEFSDAIIAAHAEIPQLVKYLHLPVQSGSDRILAAMKRNHTALE 297

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
           Y+  I ++R+  PDI ISSDFIVGFPGET+ DF  TM L++ +G+  +FSF YS R GTP
Sbjct: 298 YKSRIRKLRAAVPDILISSDFIVGFPGETEKDFEQTMKLIEDVGFDFSFSFIYSSRPGTP 357

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSP 433
            +++++   + VK +RL  LQ ++ +     +   VG +  +L+  +  K+ G L GR+ 
Sbjct: 358 AADLVDDTPDEVKKQRLAILQHRINQYGFENSRRMVGTVQRILVSDYSKKDPGMLQGRTE 417

Query: 434 WLQSVVLNSKNH-NIGDIIKVRITDVKISTLYGELV 468
             + V     N   IG  + V I D    +L G L+
Sbjct: 418 QNRIVNFRCDNPRLIGQFVDVHIDDALPHSLRGTLL 453


>gi|126175461|ref|YP_001051610.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Shewanella
           baltica OS155]
 gi|229890648|sp|A3D7M8|MIAB_SHEB5 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|125998666|gb|ABN62741.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Shewanella baltica OS155]
          Length = 474

 Score =  474 bits (1220), Expect = e-131,   Method: Composition-based stats.
 Identities = 194/449 (43%), Positives = 285/449 (63%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++  +K++GCQMN YDS +M D+    QGY       +AD+++LNTC IREKA EKV+
Sbjct: 1   MSKKLHIKTWGCQMNEYDSSKMADLLGEYQGYTLTEEASEADILLLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR + LK+       +L++ V GCVA  EG+ I  R+  V+++ GPQT +RLPE++E
Sbjct: 61  HQLGRWKTLKDK----NPNLIIGVGGCVASQEGKAIKDRAQCVDIIFGPQTLHRLPEMIE 116

Query: 142 RARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           + R G++ V+D  +   +KF+RL        R  G TAF++I EGC K+C+FCVVPYTRG
Sbjct: 117 QVRRGEKAVIDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCSKYCSFCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR    ++ E  +L + GV E+ LLGQNVNA+RG   DG  CTF++LL  ++ I G+
Sbjct: 172 EEVSRPSDDIILEIAQLAEQGVREVNLLGQNVNAYRGATHDGAICTFAELLRFVAAIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+TTSHP + +  +I  + D   L+ +LHLPVQSGSDRIL +M R H A EY+ II 
Sbjct: 232 DRIRFTTSHPIEFTQDIIDVYEDTPELVSFLHLPVQSGSDRILTAMKRGHMAIEYKSIIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           R+R  R  I ISSDFI+GFPGET +DF  T+ L++ IG+  +FSF YS R GTP +++ +
Sbjct: 292 RLRKAREGIQISSDFIIGFPGETKEDFADTIKLIEDIGFDHSFSFIYSARPGTPAADLPD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVV 439
            VD   K +RL  LQ ++ +Q + ++   +G +  +L+E    K   +L GR+   + V 
Sbjct: 352 NVDMEEKKQRLAILQDRITQQAMRYSRHMMGTVQRILVEGPSVKNPMELRGRTENNRVVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
              +  +IG  + V I DV  ++L G  +
Sbjct: 412 FEGQPKHIGTFVDVEIVDVYTNSLRGVFI 440


>gi|157962954|ref|YP_001502988.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Shewanella
           pealeana ATCC 700345]
 gi|229890653|sp|A8H7B6|MIAB_SHEPA RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|157847954|gb|ABV88453.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Shewanella pealeana ATCC
           700345]
          Length = 475

 Score =  474 bits (1219), Expect = e-131,   Method: Composition-based stats.
 Identities = 195/449 (43%), Positives = 286/449 (63%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++  +K++GCQMN YDS +M D+    +GY   ++ ++AD+++LNTC IREKA EKV+
Sbjct: 1   MSKKLHIKTWGCQMNEYDSSKMADLLDEYEGYTLTDNAEEADVLLLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR + LK+        L++ V GCVA  EG+ I  R+  V+++ GPQT +RLPE+++
Sbjct: 61  HQLGRWKTLKDK----KPGLIIGVGGCVASQEGKAIKERAQCVDLIFGPQTLHRLPEMID 116

Query: 142 RARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           + + GK+ V+D  +   +KF+RL        R  G +AF++I EGC K+C+FCVVPYTRG
Sbjct: 117 QIKDGKKAVIDVSFPEVEKFDRLP-----EPRAEGPSAFVSIMEGCSKYCSFCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR L  V+ E  +L + GV E+ LLGQNVNA+RG   D E CTF++LL  ++ I G+
Sbjct: 172 EEVSRPLDDVILEIAQLAEQGVREVNLLGQNVNAYRGATHDDEICTFAELLRYVAAIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            RLR+TTSHP + +  +I  + D   L+ +LHLPVQSGSD IL  M R H A EY+ II 
Sbjct: 232 DRLRFTTSHPIEFTQDIIDVYEDTPELVSFLHLPVQSGSDLILTQMKRGHMAIEYKSIIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           R+R  RPDI ISSDFI+GFPGE+  DF  TM L++ I +  +FSF YS R GTP +++ +
Sbjct: 292 RLRKARPDILISSDFIIGFPGESKQDFADTMKLIEDIQFDHSFSFIYSARPGTPAADLPD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVV 439
            V  + K ERL  LQ ++ +Q + ++   VG +  +L+E    K   +L GR+   + V 
Sbjct: 352 NVSLDEKKERLAILQDRITQQAMRYSRQMVGTVQRILVEGPSVKNPMELRGRTENSRVVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
               + +IG  + V I DV  ++L G  +
Sbjct: 412 FEGLHEHIGKFVDVEIVDVYTNSLRGVFI 440


>gi|323499966|ref|ZP_08104924.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Vibrio
           sinaloensis DSM 21326]
 gi|323314983|gb|EGA68036.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Vibrio
           sinaloensis DSM 21326]
          Length = 474

 Score =  474 bits (1219), Expect = e-131,   Method: Composition-based stats.
 Identities = 195/449 (43%), Positives = 281/449 (62%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++  +K++GCQMN YDS +M D+   + GYE     ++AD+++LNTC IREKA EKV+
Sbjct: 1   MSKKLLIKTWGCQMNEYDSSKMADLLNAANGYELTEDPEEADVLLLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR + LK+ +      +   V    A  EG+ I  R+P V+V+ GPQT +RLPE+++
Sbjct: 61  HQLGRWKTLKDKKDGVVIGVGGCV----ATQEGDHIRERAPFVDVIFGPQTLHRLPEMIK 116

Query: 142 RARFGKRVV-DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           +++     + D  +   +KF+RL        R  G TAF++I EGC K+CT+CVVPYTRG
Sbjct: 117 QSQNDDAPIMDISFPEIEKFDRLP-----EPRAEGATAFVSIMEGCSKYCTYCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR +  V+ E  +L D GV E+ LLGQNVNA+RG   +G+ C+F++LL  ++ I G+
Sbjct: 172 EEVSRPMDDVLFEIAQLADQGVREVNLLGQNVNAYRGPTHEGDICSFAELLRLVASIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+TTSHP + +D +I  + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II 
Sbjct: 232 DRIRFTTSHPLEFTDDIIAVYEDTPELVSFLHLPVQSGSDRILTMMKRPHTAIEYKSIIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R  RPDI ISSDFIVGFPGET  D + TM L+  + +  +FSF +SPR GTP ++   
Sbjct: 292 KLRKARPDIQISSDFIVGFPGETAKDHQDTMKLIKDVDFDMSFSFIFSPRPGTPAADYPC 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439
            V E  K ERL  LQ+ +  Q + ++   +G    VL+E   K+   +L  R+   + V 
Sbjct: 352 DVPEQEKKERLYELQQTVNAQAMRYSRLMLGTEQRVLVEGPSKKNLMELRARTENNRVVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG  + V+ITDV  ++L GELV
Sbjct: 412 FEGSADLIGQFVDVKITDVFANSLRGELV 440


>gi|229162708|ref|ZP_04290665.1| hypothetical protein bcere0009_34780 [Bacillus cereus R309803]
 gi|228620590|gb|EEK77459.1| hypothetical protein bcere0009_34780 [Bacillus cereus R309803]
          Length = 509

 Score =  474 bits (1219), Expect = e-131,   Method: Composition-based stats.
 Identities = 183/450 (40%), Positives = 271/450 (60%), Gaps = 15/450 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
             ++F++++YGCQMN +D+  M  +F + GYE   S +DAD+++LNTC IRE A  KV+ 
Sbjct: 64  TGRKFYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFG 123

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELL 140
            LG +++LK    +   DLL+ V GC++Q E    +I++++  V++V G    +RLP +L
Sbjct: 124 ELGHLKSLK----RRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYIL 179

Query: 141 ERARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           + A F K  V   +S E D  E L  V     R+  + A++ I  GCDKFCT+C+VPYTR
Sbjct: 180 KDAMFSKETVVEVWSKEGDVIENLPKV-----RRGDIKAWVNIMYGCDKFCTYCIVPYTR 234

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G E SR    ++ E R L  NG  EITLLGQNVNA  GK  +  +    DL+  L ++  
Sbjct: 235 GKERSRRPEDIIQEIRHLAANGYKEITLLGQNVNA-YGKDFEDFEYGLGDLMDELRKVD- 292

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           + R+R+TTSHPRD  D LI+  G    L+ ++HLPVQSGS  +LK M R+++   Y +++
Sbjct: 293 IARIRFTTSHPRDFDDHLIEVLGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELV 352

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            +I+   P+  +++D IVGFP ETD+ F  TM L  ++G+  AF+F YSPR GTP + M 
Sbjct: 353 RKIKEAIPNAVLTTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMK 412

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSV 438
           + V   VK ERL  L   + +  +  ND   GQI+EVL++   K   + L G +   + V
Sbjct: 413 DNVPMEVKKERLQRLNTLVNKLAIEKNDRYKGQIVEVLVDGESKNNAEVLAGYTRTNKLV 472

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468
              +    IG ++KV++TD K  +L GELV
Sbjct: 473 NFVAPKSLIGQLVKVKVTDAKTWSLNGELV 502


>gi|187925302|ref|YP_001896944.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia phytofirmans
           PsJN]
 gi|229890466|sp|B2SYI5|MIAB_BURPP RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|187716496|gb|ACD17720.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia phytofirmans
           PsJN]
          Length = 457

 Score =  474 bits (1219), Expect = e-131,   Method: Composition-based stats.
 Identities = 193/456 (42%), Positives = 292/456 (64%), Gaps = 18/456 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++ +VK++GCQMN YDS +M D+   ++G  + ++ +DAD+I+ NTC +REKA EKV+
Sbjct: 1   MTKKVYVKTFGCQMNEYDSDKMVDVLGAAEGLVKTDTPEDADVILFNTCSVREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S LGR+R LK +      +L++ V GCVA  EG  I+ R+P V++V GPQT +RLP++++
Sbjct: 61  SDLGRVRELKEA----NPNLIIGVGGCVASQEGAAIVSRAPYVDLVFGPQTLHRLPQMID 116

Query: 142 RARF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           + R  G+  VD  +   +KF+ L        R  G +AF++I EGC K+C++CVVPYTRG
Sbjct: 117 KRRESGRAQVDISFPEIEKFDHLPPA-----RVDGPSAFVSIMEGCSKYCSYCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG--EKCTFSDLLYSLSEIK 258
            E+SR L  V+ E   L D GV E+TLLGQNVNA+R     G  E   F+ L+  +++I 
Sbjct: 172 EEVSRPLDDVLTEIAGLADQGVREVTLLGQNVNAYRAGLTLGSTEIADFAQLIEYVADIP 231

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           G+ R+RYTTSHP++ +  LI  +  +  L+ +LHLPVQ GSDRIL +M R +T  EY+ +
Sbjct: 232 GIERIRYTTSHPKEFTQRLIDTYAKVPKLVSHLHLPVQHGSDRILMAMKRGYTVLEYKSV 291

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           I ++R++RPD+++S+D IVGFPGET++DF   M LV ++ Y  +FSF YSPR GTP +N+
Sbjct: 292 IRKLRAIRPDLSLSTDMIVGFPGETEEDFDKMMALVHEMKYDTSFSFIYSPRPGTPAANL 351

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQS 437
            +     VK +RL  LQ  + E     +D+ VG+I  +L+E+   K+  +L GR+   + 
Sbjct: 352 HDDTPREVKLKRLQHLQATIEENVQRISDSMVGKIERILVERPARKDPNELAGRTENNRV 411

Query: 438 VVLNSK----NHNIGDIIKVRITDVKISTLYGELVV 469
           V   +        IG ++ V+I      +L GELV+
Sbjct: 412 VNFPAPIASHARLIGQMVDVKIVKAYPHSLRGELVL 447


>gi|56476163|ref|YP_157752.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Aromatoleum
           aromaticum EbN1]
 gi|81358300|sp|Q5P760|MIAB_AZOSE RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|56312206|emb|CAI06851.1| 2-methylthioadenine synthetase [Aromatoleum aromaticum EbN1]
          Length = 445

 Score =  474 bits (1219), Expect = e-131,   Method: Composition-based stats.
 Identities = 193/450 (42%), Positives = 293/450 (65%), Gaps = 14/450 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ +++++GCQMN YDS +M D+   S+   + ++ ++AD+I+ NTC +REKA E+V+  
Sbjct: 2   KKLYIRTFGCQMNEYDSDKMADVLGASEELVKTDNPEEADVILFNTCSVREKAQERVFHD 61

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-ER 142
           LGR+++LK S      +L++ V GCVA  EG+ I+ R+P V+VV GPQT +RLP+L+ ER
Sbjct: 62  LGRVKHLKQS----NPNLIIGVGGCVASQEGDAIVARAPYVDVVFGPQTLHRLPQLIAER 117

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
              G+  VD  +   +KF+ +        R  G +AF++I EGC K+CTFCVVPYTRG E
Sbjct: 118 RHSGRSQVDISFPEIEKFDNMPPA-----RVEGASAFVSIMEGCSKYCTFCVVPYTRGEE 172

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK--GLDGEKCTFSDLLYSLSEIKGL 260
           +SR L  V+ E   L   GV E+TLLGQNVNAWRG+     GE+  F+ LL  ++EI G+
Sbjct: 173 VSRPLDDVLAEVAGLAGQGVREVTLLGQNVNAWRGEITRDGGEQGDFAFLLECVAEIPGI 232

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            RLR+TTSHPR+M+  +  A+  +  L+ +LHLPVQSGSDRIL +M R ++  E++ ++ 
Sbjct: 233 ERLRFTTSHPREMTQRVFDAYAKIPKLVSHLHLPVQSGSDRILAAMKRGYSVLEFKSVVR 292

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R+ RPD+++SSDFIVGFPGET++DF  TM L+D++G+  +FSF YSPR GTP S++ +
Sbjct: 293 KLRAARPDLSLSSDFIVGFPGETEEDFEKTMKLIDEVGFDASFSFVYSPRPGTPASDLAD 352

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLVGRSPWLQSVV 439
            V +  K   L  LQK++ +Q  + + A VG++   L+E   ++   +L  R+   + V 
Sbjct: 353 PVPQETKLRWLARLQKRIDQQAQAISQAMVGRVERALVEGLSRKDATELAARTGNNRVVN 412

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELVV 469
                  IG  + + IT     +L GE+V 
Sbjct: 413 FVGNPRLIGQFVDLTITAALPHSLRGEIVT 442


>gi|126730915|ref|ZP_01746724.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Sagittula stellata E-37]
 gi|126708631|gb|EBA07688.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Sagittula stellata E-37]
          Length = 435

 Score =  474 bits (1219), Expect = e-131,   Method: Composition-based stats.
 Identities = 244/447 (54%), Positives = 315/447 (70%), Gaps = 13/447 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + ++ F+K+YGCQMNVYDS RM +    QGY    + DDAD+I+LNTCHIREKAAEKVYS
Sbjct: 1   MTRKLFIKTYGCQMNVYDSERMAEAMGGQGYVVTETPDDADMILLNTCHIREKAAEKVYS 60

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            LGR + LK +      DL + VAGCVAQAEGEEI+RR P+V++VVGPQ+Y+RLPEL  +
Sbjct: 61  ELGRYKGLKAA----KPDLKIGVAGCVAQAEGEEIMRRQPMVDLVVGPQSYHRLPELEAK 116

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           AR G + +DTD+  EDKFE L+        KRG TAFLT+QEGCDKFC FCVVPYTRG E
Sbjct: 117 ARTGAKALDTDFPEEDKFEHLTARP---KAKRGPTAFLTVQEGCDKFCAFCVVPYTRGAE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR   +V+ EAR L++ GV EITLLGQNVNA+      G +   + L+  L  I GL R
Sbjct: 174 LSRPAERVMREARDLVERGVREITLLGQNVNAYH-----GHERGLAGLIRELETIDGLAR 228

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP DM D LI AHG+ + LMPYLHLPVQ+GSDRILK MNR+HTA +Y ++I+R+
Sbjct: 229 IRFTTSHPNDMDDALIAAHGECEKLMPYLHLPVQAGSDRILKRMNRQHTAEQYLRLIERL 288

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+ RPD+ +S DFIVGFP ET+ DFR T+ L++ + Y  AFSFKYS R GTP +    QV
Sbjct: 289 RAARPDLHLSGDFIVGFPEETEADFRDTLALIEAVEYGSAFSFKYSERPGTPAAERA-QV 347

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
            E+ K +RL  LQ  L +QQ +  DA VG+ + VL EK G+  G++VG+S +L +V + +
Sbjct: 348 PEDEKDDRLQRLQALLTKQQRALQDAMVGREVRVLFEKPGRLPGQMVGKSEYLHAVHVEA 407

Query: 443 KNHNIGDIIKVRITDVKISTLYGELVV 469
           +    GDI  VRI     ++L G L+ 
Sbjct: 408 QGIGAGDIAPVRIESSGPNSLGGVLMA 434


>gi|326403547|ref|YP_004283629.1| (dimethylallyl)adenosine tRNA methylthiotransferase MiaB
           [Acidiphilium multivorum AIU301]
 gi|325050409|dbj|BAJ80747.1| (dimethylallyl)adenosine tRNA methylthiotransferase MiaB
           [Acidiphilium multivorum AIU301]
          Length = 450

 Score =  474 bits (1219), Expect = e-131,   Method: Composition-based stats.
 Identities = 239/451 (52%), Positives = 305/451 (67%), Gaps = 9/451 (1%)

Query: 18  VDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA 77
           + +    +   + ++GCQMNVYDS RM D+    GY +V +  DAD+++LNTCHIRE+A+
Sbjct: 1   MTETASRRTLHITTWGCQMNVYDSGRMADVLRPLGYRQVAT-QDADMVILNTCHIRERAS 59

Query: 78  EKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLP 137
           EK++S LGR+R LK SR   GG +++ VAGCVAQAEG EIL R+P V++VVG Q Y+RLP
Sbjct: 60  EKLFSELGRLRALKESR---GGAMMIAVAGCVAQAEGAEILARAPHVDLVVGSQAYHRLP 116

Query: 138 ELLERARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
           EL+      +R V+DTD+    KF+ L          +G  AFL IQEGCDKFCTFCVVP
Sbjct: 117 ELIAEIEAKRRAVIDTDFPAAQKFDLLP----EDQASQGPIAFLAIQEGCDKFCTFCVVP 172

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256
           YTRG E SR  + ++ EAR+L+  G  EI LLGQNVNAW G+  DG     + LL  L++
Sbjct: 173 YTRGAEASRPAAAILAEARRLVAGGAREIALLGQNVNAWHGEAPDGATWNLARLLAELAD 232

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           I GL RLRYTTSHPRDM   LI AH D   LMP+LHLPVQSGSD IL  MNRRH A  +R
Sbjct: 233 IDGLARLRYTTSHPRDMDAALIAAHRDNPKLMPFLHLPVQSGSDAILARMNRRHGADLFR 292

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
           +I   +R+ RPDIA+SSDFIVGFPGETD DF ATM LV + G+A A+SFKYS R GTP +
Sbjct: 293 RIAGELRAARPDIALSSDFIVGFPGETDADFAATMRLVRETGFALAYSFKYSRRPGTPAA 352

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQ 436
           +  +Q+DE VK  RL  LQ  LR+QQ +FN A VG+  EVL    G+  G+  GRSP+LQ
Sbjct: 353 DAADQIDEAVKDARLQELQAVLRDQQHAFNRAQVGRSFEVLFTGPGRHPGQSTGRSPYLQ 412

Query: 437 SVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
            VV+++ +   G +  V+I     ++L   L
Sbjct: 413 PVVVDNADIPPGTLRTVKIVQSNPNSLMASL 443


>gi|219871156|ref|YP_002475531.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Haemophilus
           parasuis SH0165]
 gi|219691360|gb|ACL32583.1| bifunctional enzyme involved in thiolation andmethylation of tRNA
           [Haemophilus parasuis SH0165]
          Length = 463

 Score =  474 bits (1219), Expect = e-131,   Method: Composition-based stats.
 Identities = 204/436 (46%), Positives = 289/436 (66%), Gaps = 12/436 (2%)

Query: 36  MNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSR 94
           MN YDS +M D+  S  G E   + ++AD+++LNTC IREKA EKV+S LGR +N K   
Sbjct: 1   MNEYDSSKMADLLNSTHGLELTENPEEADILLLNTCSIREKAQEKVFSQLGRWKNWK--- 57

Query: 95  IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR-VVDTD 153
            K+  DL++ V GCVA  EGE I  R+P V++V GPQT +RLPE++ + R GK  VVD  
Sbjct: 58  -KDKPDLIIGVGGCVASQEGEHIRERAPFVDIVFGPQTLHRLPEMINQIRGGKSSVVDIS 116

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           +   +KF+RL        R  G TAF++I EGC+K+C+FCVVPYTRG E+SR +  V+ E
Sbjct: 117 FPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCSFCVVPYTRGEEVSRPVDDVLFE 171

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
             +L + GV E+ LLGQNVNA+RG+  DG  C+F++LL  ++ I G+ R+RYTTSHP + 
Sbjct: 172 IAQLAEQGVREVNLLGQNVNAYRGETFDGGICSFAELLRLVASIDGIDRVRYTTSHPIEF 231

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
           +D +I+ + D   L+ +LHLP+QSGSDR+L  M R HTA EY+ II ++R  RPDI ISS
Sbjct: 232 TDDIIEVYKDTPELVSFLHLPIQSGSDRVLTMMKRNHTALEYKAIIRKLREARPDIQISS 291

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLC 393
           DFIVGFPGET  DF  TM +++++ +  +FSF YS R GTP +++ + V E+ K ERL  
Sbjct: 292 DFIVGFPGETAQDFEQTMKIIEQVNFDMSFSFIYSARPGTPAADLPDDVTEDEKKERLYR 351

Query: 394 LQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNSKNHNIGDIIK 452
           LQ+++  Q + F+ A +G    +L+E   K+   +L GR+   + V      + IG  + 
Sbjct: 352 LQQRINNQAMQFSRAMLGTEQRILVEGPSKKDIMELTGRTESNRIVNFQGTPNMIGKFVD 411

Query: 453 VRITDVKISTLYGELV 468
           V+ITDV  ++L GE+V
Sbjct: 412 VKITDVYTNSLRGEVV 427


>gi|228959979|ref|ZP_04121644.1| hypothetical protein bthur0005_34510 [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228799722|gb|EEM46674.1| hypothetical protein bthur0005_34510 [Bacillus thuringiensis
           serovar pakistani str. T13001]
          Length = 509

 Score =  474 bits (1219), Expect = e-131,   Method: Composition-based stats.
 Identities = 183/450 (40%), Positives = 269/450 (59%), Gaps = 15/450 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
             ++F++++YGCQMN +D+  M  +F + GYE   S +DAD+++LNTC IRE A  KV+ 
Sbjct: 64  TGRKFYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFG 123

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELL 140
            LG +++LK    +   DLL+ V GC++Q E    +I++++  V++V G    +RLP +L
Sbjct: 124 ELGHLKSLK----RRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYIL 179

Query: 141 ERARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           + A F K  V   +S E D  E L  V     R+  + A++ I  GCDKFCT+C+VPYTR
Sbjct: 180 KDAMFSKETVVEVWSKEGDVIENLPKV-----RRGDIKAWVNIMYGCDKFCTYCIVPYTR 234

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G E SR    ++ E R L  NG  EITLLGQNVNA  GK  +  +    DL+  L ++  
Sbjct: 235 GKERSRRPEDIIQEIRHLAANGYKEITLLGQNVNA-YGKDFEDIEYGLGDLMDELRKVD- 292

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           + R+R+TTSHPRD  D LI+  G    L+ ++HLPVQSGS  +LK M R+++   Y +++
Sbjct: 293 IARIRFTTSHPRDFDDHLIEVLGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELV 352

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            +I+   PD  +++D IVGFP ETD+ F  TM L  ++G+  AF+F YSPR GTP + M 
Sbjct: 353 RKIKEAIPDAVLTTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMK 412

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSV 438
           + V   VK ERL  L   +    +  N    GQI+EVL++   K   + L G +   + V
Sbjct: 413 DNVPMEVKKERLQRLNTLVNTLAIEKNSRYKGQIVEVLVDGESKNNSEVLAGYTRTNKLV 472

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468
              +    IG ++KV+IT+ K  +L GELV
Sbjct: 473 NFVASKSLIGQLVKVKITEAKTWSLNGELV 502


>gi|39933525|ref|NP_945801.1| (dimethylallyl)adenosine tRNA methylthiotransferase
           [Rhodopseudomonas palustris CGA009]
 gi|81564244|sp|Q6NCM4|MIAB_RHOPA RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|39647371|emb|CAE25892.1| tRNA-i(6)A37 modification enzyme MiaB [Rhodopseudomonas palustris
           CGA009]
          Length = 463

 Score =  474 bits (1219), Expect = e-131,   Method: Composition-based stats.
 Identities = 237/444 (53%), Positives = 326/444 (73%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P++  +KSYGCQMNVYD+ RM D    +G+    ++DDADL++LNTCHIREKA+EKVYS 
Sbjct: 4   PRKLHIKSYGCQMNVYDAQRMVDALAPEGFVETANVDDADLVILNTCHIREKASEKVYSE 63

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR+R  ++     G  + + VAGCVAQAEG EI+RR+P+V+VVVGPQ+Y+ LP+LL +A
Sbjct: 64  LGRLRVARDEAANHGRRMQIAVAGCVAQAEGAEIIRRAPVVDVVVGPQSYHNLPQLLAKA 123

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
               R ++T++ +EDKF  L        R RG++AF+T+QEGCDKFCTFCVVPYTRG E+
Sbjct: 124 EQHGRALETEFPIEDKFGVLPQPAPDAIRARGISAFVTVQEGCDKFCTFCVVPYTRGAEM 183

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR ++ +V++ ++L +NGV E+TL+GQNVNA+ G G D    +   L+  L+EI G+VRL
Sbjct: 184 SRPVAAIVEDVKRLAENGVREVTLIGQNVNAYHGDGPDRLAWSLGRLVRRLAEIPGIVRL 243

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           RY+TSHP D++D L+ AH DL  LMP++HLPVQSGSDRIL +MNR+HTA +YR++IDR R
Sbjct: 244 RYSTSHPNDVNDDLLAAHRDLPALMPFVHLPVQSGSDRILAAMNRKHTADDYRRVIDRFR 303

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
                IA SSDFIVGFPGET+ DF AT+ LV +IGYA A+SFKYSPR GTP ++M E V 
Sbjct: 304 LASEAIAFSSDFIVGFPGETERDFSATLALVAQIGYAGAYSFKYSPRPGTPAADMAEMVP 363

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
             V  ERL  LQ+ + +QQ +FN A +G+ +EVL E+ G++ G++VGR+ +LQ   + + 
Sbjct: 364 AAVMDERLEQLQQLIDQQQSAFNKAAIGRTVEVLFERAGRKPGQIVGRTAYLQPAHVMAP 423

Query: 444 NHNIGDIIKVRITDVKISTLYGEL 467
           +  IG ++ VR+  ++  +L GEL
Sbjct: 424 DSIIGKVLPVRVDSLERYSLLGEL 447


>gi|89902134|ref|YP_524605.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Rhodoferax
           ferrireducens T118]
 gi|123091133|sp|Q21T29|MIAB_RHOFD RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|89346871|gb|ABD71074.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Rhodoferax ferrireducens
           T118]
          Length = 452

 Score =  473 bits (1218), Expect = e-131,   Method: Composition-based stats.
 Identities = 203/456 (44%), Positives = 290/456 (63%), Gaps = 20/456 (4%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++ F+K+YGCQMN YDS +M D+   +QGYE  +++++ADLI+ NTC +REKA EKV+
Sbjct: 1   MSKKVFIKTYGCQMNEYDSDKMSDVLGAAQGYEPTDNVEEADLILFNTCSVREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL- 140
           S LGR+++LK          L+ V GCVA  EG  I+ R+P V+VV GPQT +RLP+LL 
Sbjct: 61  SDLGRVKHLKKK------GALIGVGGCVASQEGAAIIERAPYVDVVFGPQTLHRLPQLLA 114

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           ER R  +  VD  +   +KF+ L        R  G +AF++I EGC K+C++CVVPYTRG
Sbjct: 115 ERERLNRSQVDISFPEIEKFDHLPPA-----RVEGASAFVSIMEGCSKYCSYCVVPYTRG 169

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG------EKCTFSDLLYSL 254
            E+SR    V+ E   L D GV EITLLGQNVNAWR + +        E   F+ LL  +
Sbjct: 170 EEVSRPFEDVLVEVAGLADQGVKEITLLGQNVNAWRSRMIGAASALSSEMADFATLLEYV 229

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
           S+I G+ R+RY TSHP + +  LI A+  L  L+ +LHLPVQ GSDRIL +M R +TA E
Sbjct: 230 SDIPGIERIRYVTSHPNEFTPSLIAAYDKLPKLVSHLHLPVQHGSDRILMAMKRGYTAME 289

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
           Y+  + ++R++RPD+A+SSDFIVGFPGET+DDF   M L+D +G+  +FSF +SPR GTP
Sbjct: 290 YKSTVRKLRAIRPDMALSSDFIVGFPGETEDDFSKMMKLIDDVGFDNSFSFIFSPRPGTP 349

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLVGRSP 433
            +N+ +     VK  RL  LQ  + +     +++ +G +  +L+E   K    +L+GR+ 
Sbjct: 350 AANLHDDTPHEVKLRRLQHLQTVINDSIKRISESRLGTVQRILVEGASKRDSTELMGRTE 409

Query: 434 WLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
             + V    +   IG ++ V IT+ +  TL GE+V 
Sbjct: 410 CNRVVNFCGQPRLIGQMVDVAITETRSFTLRGEVVT 445


>gi|319791713|ref|YP_004153353.1| tRNA-i(6)a37 thiotransferase enzyme miab [Variovorax paradoxus EPS]
 gi|315594176|gb|ADU35242.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Variovorax paradoxus EPS]
          Length = 455

 Score =  473 bits (1218), Expect = e-131,   Method: Composition-based stats.
 Identities = 204/449 (45%), Positives = 287/449 (63%), Gaps = 15/449 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ F+K++GCQMN YDS +M D+   +QGYE   ++D+ADLI+ NTC +REKA EKV+S 
Sbjct: 2   KKVFIKTFGCQMNEYDSDKMADVLNAAQGYEPTQNVDEADLILFNTCSVREKAQEKVFSD 61

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-ER 142
           LGR+++LK   +K      + V GCVA  EG  I+ R+P V++V GPQT +RLPE+L +R
Sbjct: 62  LGRVKHLKAKGVK------IGVGGCVASQEGAAIIARAPYVDIVFGPQTLHRLPEMLNDR 115

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            R  +  VD  +   +KF+ L        R  G TAF++I EGC K+C++CVVPYTRG E
Sbjct: 116 ERLNRPQVDISFPEIEKFDHLPPA-----RVEGATAFVSIMEGCSKYCSYCVVPYTRGEE 170

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG-EKCTFSDLLYSLSEIKGLV 261
           ++R L  V+ E   L D GV EITLLGQNVNA+RGK  D  E   F+ L+  ++EI G+ 
Sbjct: 171 VNRPLDDVLVEIAGLADQGVREITLLGQNVNAYRGKMGDTAEIADFALLIEYVAEIPGIE 230

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+RYTTSHP + +  LI+A+  +  L+ +LHLPVQ GSDRIL +M R +TA EY+  + +
Sbjct: 231 RIRYTTSHPNEFTPRLIEAYAKVPQLVSHLHLPVQHGSDRILMAMKRGYTAMEYKSTVRK 290

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R++RPD+A+SSDFIVGFPGETD+DF   M L+D   +  +FSF +SPR GTP + + + 
Sbjct: 291 LRAIRPDLALSSDFIVGFPGETDEDFAKMMKLIDDCQFDNSFSFIFSPRPGTPAAALHDD 350

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVL 440
               VK  RL  LQ+ +      F DA VG    VL+E   ++   +L+GR+   + V  
Sbjct: 351 TPHEVKLARLQTLQRVIDGNVRRFGDALVGSTQRVLVEGASRKDANELMGRTACNRVVNF 410

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELVV 469
                 +G +  +RIT     TL GE+V 
Sbjct: 411 EGDARLVGQMTDLRITRSLAYTLRGEVVT 439


>gi|225865753|ref|YP_002751131.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus 03BB102]
 gi|225786232|gb|ACO26449.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus 03BB102]
          Length = 509

 Score =  473 bits (1218), Expect = e-131,   Method: Composition-based stats.
 Identities = 183/450 (40%), Positives = 272/450 (60%), Gaps = 15/450 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
             ++F++++YGCQMN +D+  M  +F + GYE   S +DAD+++LNTC IRE A  KV+ 
Sbjct: 64  TGRKFYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFG 123

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELL 140
            LG +++LK    +   DLL+ V GC++Q E    +I++++  V++V G    +RLP +L
Sbjct: 124 ELGHLKSLK----RRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYIL 179

Query: 141 ERARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           + A F K  V   +S E D  E L  V     R+  + A++ I  GCDKFCT+C+VPYTR
Sbjct: 180 KDAMFSKETVVEVWSKEGDVIENLPKV-----RRGDIKAWVNIMYGCDKFCTYCIVPYTR 234

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G E SR    ++ E R L+ NG  EITLLGQNVNA  GK  +  +    DL+  L ++  
Sbjct: 235 GKERSRRPEDIIQEIRHLVANGYKEITLLGQNVNA-YGKDFEDIEYGLGDLMDELRKVD- 292

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           + R+R+TTSHPRD  D LI+  G    L+ ++HLPVQSGS  +LK M R+++   Y +++
Sbjct: 293 IARIRFTTSHPRDFDDHLIEVLGKGGNLVEHIHLPVQSGSTEMLKIMARKYSREHYLELV 352

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            +I+   P+  +++D IVGFP ETD+ F  TM L  ++G+  AF+F YSPR GTP + M 
Sbjct: 353 RKIKEAIPNAVLTTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMK 412

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSV 438
           + V   VK ERL  L   + +  +  ND   GQI+EVL++   K   + L G +   + V
Sbjct: 413 DNVPMEVKKERLQRLNALVNKLAIEKNDRYKGQIVEVLVDGESKNNPEVLAGYTRTNKLV 472

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468
              +    IG ++KV++TD K  +L GELV
Sbjct: 473 NFVAPKSLIGQLVKVKVTDAKTWSLNGELV 502


>gi|187927511|ref|YP_001897998.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Ralstonia
           pickettii 12J]
 gi|309779787|ref|ZP_07674542.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Ralstonia sp. 5_7_47FAA]
 gi|229890622|sp|B2UFP3|MIAB_RALPJ RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|187724401|gb|ACD25566.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Ralstonia pickettii 12J]
 gi|308921364|gb|EFP67006.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Ralstonia sp. 5_7_47FAA]
          Length = 456

 Score =  473 bits (1218), Expect = e-131,   Method: Composition-based stats.
 Identities = 203/454 (44%), Positives = 287/454 (63%), Gaps = 20/454 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ F+K+YGCQMN YDS +M D+   ++G    ++ +DAD+I+ NTC +REKA EKV+S 
Sbjct: 2   KKVFIKTYGCQMNEYDSDKMSDVLNAAEGLVPTDTPEDADVILFNTCSVREKAQEKVFSE 61

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE-R 142
           LGR++ LK        DL+V V GCVA  EG  I+ R+P V+VV GPQT +RLP+L+  R
Sbjct: 62  LGRVKALKA----LKPDLVVGVGGCVASQEGASIVARAPYVDVVFGPQTLHRLPDLIAAR 117

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            R G+  VD  +   +KF+ L        R  G +A+++I EGC K+C++CVVPYTRG E
Sbjct: 118 RRTGRSQVDVSFPEIEKFDHLPPA-----RVDGASAYVSIMEGCSKYCSYCVVPYTRGEE 172

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG-EKCTFSDLLYSLSEIKGLV 261
           +SR    V+ E   L + GV E+TLLGQNVNA+ GK  D  E+  F+ LL  ++EI G+ 
Sbjct: 173 VSRPFDDVLAEVAGLAEQGVREVTLLGQNVNAYIGKMGDTSERADFALLLEYVAEIPGIE 232

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+RYTTSHP++ S  LI+A+     L+ +LHLPVQ GSDRIL +M R +T  EY+  I +
Sbjct: 233 RIRYTTSHPKEFSSRLIEAYATNPKLVDHLHLPVQHGSDRILMAMKRGYTVLEYKSSIRK 292

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R++RP+I+I++DFIVGFPGETD DF  TMDL+ +IGY  +FSF YSPR GTP +N+ + 
Sbjct: 293 LRAIRPNISIATDFIVGFPGETDADFAKTMDLIHEIGYDTSFSFIYSPRPGTPAANLHDD 352

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVL 440
             + VK ERL  LQ  + E     +   VG +  +L+E    K+  +L GR+   + V  
Sbjct: 353 TPQAVKLERLKHLQATIEENVARISQGMVGSVQRILVEGPSRKDPTELHGRTENNRVVNF 412

Query: 441 -------NSKNHNIGDIIKVRITDVKISTLYGEL 467
                    +   IG ++ VRI      +L GE+
Sbjct: 413 ALPDLPQVRREQLIGQMLDVRIVHAFPHSLRGEV 446


>gi|83854736|ref|ZP_00948266.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Sulfitobacter sp.
           NAS-14.1]
 gi|83842579|gb|EAP81746.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Sulfitobacter sp.
           NAS-14.1]
          Length = 439

 Score =  473 bits (1218), Expect = e-131,   Method: Composition-based stats.
 Identities = 243/446 (54%), Positives = 314/446 (70%), Gaps = 9/446 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
            P++ F+K+YGCQMNVYDS RM +      Y    +  DAD+I+LNTCHIREKAAEKVYS
Sbjct: 3   APKKLFIKTYGCQMNVYDSERMAESLGDN-YVETKTAADADMILLNTCHIREKAAEKVYS 61

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            LGR++ LK        DL + VAGCVAQAEG EI+RR P V++VVGPQ+Y+RLP +  R
Sbjct: 62  ELGRLKPLKE----LNPDLKIGVAGCVAQAEGAEIMRRQPAVDLVVGPQSYHRLPAMEAR 117

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            R GK  +DTD+  EDKFE+L    G     R  +AFLT+QEGCDKFC FCVVPYTRG E
Sbjct: 118 VRSGKTALDTDFPEEDKFEKLK---GRGKATRAPSAFLTVQEGCDKFCAFCVVPYTRGAE 174

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR  ++V+ EAR+L++ GV E+TLLGQNVNA+ G G +G   T + L+  L++I GL R
Sbjct: 175 VSRPATRVLTEARELVERGVREVTLLGQNVNAYHGVGEEGADYTLARLIKELAKIDGLER 234

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +RYTTSHP DM D LI AHG++D LMPYLHLPVQSGSDRILK MNR HTA  Y ++I+RI
Sbjct: 235 IRYTTSHPNDMDDALIAAHGEIDKLMPYLHLPVQSGSDRILKRMNRSHTAESYLRLIERI 294

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+ RPDI +S DFIVGFP ET  DF ATM+LV ++ Y  A+SFKYS R GTP +    QV
Sbjct: 295 RAARPDIVMSGDFIVGFPEETHTDFEATMELVREVKYGYAYSFKYSTRPGTPAAERP-QV 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
           +  +  ERL  LQ  +  QQ    ++ VG+ + VL+EK G+E G++VG+S +L SV ++ 
Sbjct: 354 EAAIADERLQRLQGLITGQQREIQNSMVGRDVSVLVEKAGREAGQMVGKSEYLHSVHIDE 413

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
               +GD+++VRI D K ++L    +
Sbjct: 414 AQAEVGDVVRVRIVDAKTNSLTARQI 439


>gi|124265725|ref|YP_001019729.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Methylibium
           petroleiphilum PM1]
 gi|229890616|sp|A2SD55|MIAB_METPP RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|124258500|gb|ABM93494.1| bifunctional enzyme involved in thiolation and methylation of tRNA
           [Methylibium petroleiphilum PM1]
          Length = 457

 Score =  473 bits (1218), Expect = e-131,   Method: Composition-based stats.
 Identities = 193/460 (41%), Positives = 280/460 (60%), Gaps = 19/460 (4%)

Query: 18  VDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQ-GYERVNSMDDADLIVLNTCHIREKA 76
           +      ++ F+K++GCQMN YDS +M D+  +  GYE    ++ ADLI+ NTC +REKA
Sbjct: 1   MSAAGTGKKVFIKTFGCQMNEYDSDKMADVLRAAEGYEPTTDVEQADLILFNTCSVREKA 60

Query: 77  AEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL 136
            EKV+S LGR+++LK   +K      + V GCVA  EG  ++ R+P V+VV GPQT +RL
Sbjct: 61  QEKVFSDLGRVKHLKARGVK------IGVGGCVASQEGAALIERAPYVDVVFGPQTLHRL 114

Query: 137 PELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
           PE+L R    +R  VD  +   +KF+ L        R  G TAF++I EGC K+C++CVV
Sbjct: 115 PEMLARRDAQQRPQVDISFPEIEKFDHLPPA-----RVDGATAFVSIMEGCSKYCSYCVV 169

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG-EKCTFSDLLYSL 254
           PYTRG E+SR    V+ E   L D GV E+TLLGQNVN +RG+  D  E   F+ LL  +
Sbjct: 170 PYTRGEEVSRPFDDVLTEVASLADQGVKEVTLLGQNVNGYRGRMGDTAEIADFALLLEYV 229

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
           +EI G+ R+RYTTSHP + S  LI  +  +  L+ +LHLPVQ GSDRIL +M R +T+ E
Sbjct: 230 AEIPGIARIRYTTSHPNEFSQRLIDVYARVPQLVNHLHLPVQHGSDRILSAMKRGYTSLE 289

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
           Y+  I ++R++RPDI++S+DFIVGFPGETDDD   TM L++ +G+  +FSF YS R GTP
Sbjct: 290 YKSSIRKLRAIRPDISLSTDFIVGFPGETDDDHARTMKLIEDVGFDHSFSFIYSARPGTP 349

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-----KLV 429
            + + +     +K  RL  +Q+ +         + VG +  +L+E   +        +L+
Sbjct: 350 AAALHDDAPRELKLARLQQVQEAIEANGRRIGQSRVGTVQRILVEGPSRRPELNAGHELM 409

Query: 430 GRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
           GR+   + V         G +I V IT+    +L GE+++
Sbjct: 410 GRTECNRIVNFAGPARLTGQLIDVTITEAYPHSLRGEVLL 449


>gi|228986916|ref|ZP_04147043.1| hypothetical protein bthur0001_35910 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|229157351|ref|ZP_04285429.1| hypothetical protein bcere0010_35340 [Bacillus cereus ATCC 4342]
 gi|228626078|gb|EEK82827.1| hypothetical protein bcere0010_35340 [Bacillus cereus ATCC 4342]
 gi|228772865|gb|EEM21304.1| hypothetical protein bthur0001_35910 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
          Length = 509

 Score =  473 bits (1218), Expect = e-131,   Method: Composition-based stats.
 Identities = 183/450 (40%), Positives = 271/450 (60%), Gaps = 15/450 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
             ++F++++YGCQMN +D+  M  +F + GYE   S +DAD+++LNTC IRE A  KV+ 
Sbjct: 64  TGRKFYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFG 123

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELL 140
            LG +++LK    +   DLL+ V GC++Q E    +I++++  V++V G    +RLP +L
Sbjct: 124 ELGHLKSLK----RRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYIL 179

Query: 141 ERARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           + A F K  V   +S E D  E L  V     R+  + A++ I  GCDKFCT+C+VPYTR
Sbjct: 180 KDAMFSKETVVEVWSKEGDVIENLPKV-----RRGDIKAWVNIMYGCDKFCTYCIVPYTR 234

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G E SR    ++ E R L  NG  EITLLGQNVNA  GK  +  +    DL+  L ++  
Sbjct: 235 GKERSRRPEDIIQEIRHLAANGYKEITLLGQNVNA-YGKDFEDIEYGLGDLMDELRKVD- 292

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           + R+R+TTSHPRD  D LI+  G    L+ ++HLPVQSGS  +LK M R+++   Y +++
Sbjct: 293 IARIRFTTSHPRDFDDHLIEVLGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELV 352

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            +I+   P+  +++D IVGFP ETD+ F  TM L  ++G+  AF+F YSPR GTP + M 
Sbjct: 353 RKIKEAIPNAVLTTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMK 412

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSV 438
           + V   VK ERL  L   + +  +  ND   GQI+EVL++   K   + L G +   + V
Sbjct: 413 DNVPMEVKKERLQRLNALVNKLAIEKNDRYKGQIVEVLVDGESKNNPEVLAGYTRTNKLV 472

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468
              +    IG ++KV++TD K  +L GELV
Sbjct: 473 NFVAPKSLIGQLVKVKVTDAKTWSLNGELV 502


>gi|30250262|ref|NP_842332.1| Fe-S oxidoreductase family protein [Nitrosomonas europaea ATCC
           19718]
 gi|75540036|sp|Q82SI7|MIAB_NITEU RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|30181057|emb|CAD86247.1| Fe-S oxidoreductases family 1 [Nitrosomonas europaea ATCC 19718]
          Length = 443

 Score =  473 bits (1218), Expect = e-131,   Method: Composition-based stats.
 Identities = 209/448 (46%), Positives = 295/448 (65%), Gaps = 12/448 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQ-GYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           +  + +++++GCQMN YDS +M D+  S+ G E   + ++ADLI+ NTC +REKA EKV+
Sbjct: 1   MGSKLYIRTFGCQMNEYDSAKMADILLSEKGMELAETPEEADLILFNTCSVREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR+R+LKNS      DLL+ V GCVA  EG EI++R+P V++V GPQT +RLP+L++
Sbjct: 61  HDLGRVRHLKNS----KPDLLIGVGGCVASQEGPEIVKRAPFVDLVFGPQTLHRLPDLID 116

Query: 142 -RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
            R R G+  VD  +   +KF+RL        R  G TAF++I EGC K+C+FCVVPYTRG
Sbjct: 117 ARRRTGRPQVDISFPEIEKFDRLPPA-----RTEGSTAFVSIMEGCSKYCSFCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR L  V+ E   L   GV E+TLLGQNVNA+ GK ++GE   F+ LL  + EI G+
Sbjct: 172 EEVSRPLDDVLTEVAGLAIQGVKEVTLLGQNVNAYLGKMINGEIADFATLLDYIHEIPGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+RYTTSHPR+ +  LI+A+  L  L+ ++HLPVQSGSDRIL +M R +T  EY+ I+ 
Sbjct: 232 ERIRYTTSHPREFTARLIEAYQRLPKLVGHVHLPVQSGSDRILAAMKRGYTTVEYKSIVR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R VRPDI+ISSDFI+GFPGET+DDF ATM L+D + + ++FSF YSPR GTP +++ +
Sbjct: 292 KLRLVRPDISISSDFIIGFPGETEDDFEATMKLIDDVHFDESFSFIYSPRPGTPAADLPD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVV 439
                +K  RL  LQ+K++    + +   V  +  +L+E    K+ G+  GR+   + V 
Sbjct: 352 NTSHQIKLTRLYRLQEKIQLNAQAISQGMVDTVQRILVEGPSRKDPGEFCGRTDNNRVVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGEL 467
                   G  I +RIT V   TL GE+
Sbjct: 412 FAGHAGLTGSFIDIRITAVSSHTLRGEI 439


>gi|256821541|ref|YP_003145504.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Kangiella koreensis DSM
           16069]
 gi|256795080|gb|ACV25736.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Kangiella koreensis DSM
           16069]
          Length = 446

 Score =  473 bits (1218), Expect = e-131,   Method: Composition-based stats.
 Identities = 201/450 (44%), Positives = 294/450 (65%), Gaps = 12/450 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++ F+K++GCQMN YDS RM D+     G E   S ++AD+++LNTC IREKA EKV+
Sbjct: 1   MSKKLFIKTWGCQMNEYDSSRMSDLLNKTHGLEAAASAEEADVVLLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S LG+ +NLK +      DL++ V GCVA  EGE I +R+P V+V+ GPQT +RLPE++ 
Sbjct: 61  SQLGQWKNLKQN----NPDLIIGVGGCVASQEGEAIRQRAPYVDVIFGPQTLHRLPEMIM 116

Query: 142 RARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           +A   K+ VVD  +   +KF+RL        R  G TAF+++ EGC K+C+FCVVPYTRG
Sbjct: 117 QASGQKKAVVDVSFPEIEKFDRLP-----EPRAEGPTAFVSVMEGCSKYCSFCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR    V+ E  +L + GV EI LLGQNVNA+RG   +G+    ++L+  ++ I G+
Sbjct: 172 EEVSRPFDDVLAECAQLAEQGVREINLLGQNVNAYRGITHEGDTADLAELITYVAAIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+RYTTSHP + S+ LI+ + ++  L+ +LHLPVQSGSDR+L  M R HT  EY+  I 
Sbjct: 232 DRIRYTTSHPVEFSERLIQVYAEVPELVSHLHLPVQSGSDRVLAMMKRGHTVLEYKSKIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R +RPDI++SSDFI+GFPGE+D DF  TM+L+  IGY  +FSF YS R GTP +++++
Sbjct: 292 KLRQIRPDISMSSDFIIGFPGESDQDFEDTMNLIGDIGYDHSFSFIYSARPGTPAADIVD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVV 439
               +VK +RL  LQ+++ +Q  S +   +G   +VL+E    K+  +L GR+   + V 
Sbjct: 352 DTPMDVKKQRLSILQQRINQQAFSISRNMIGTKQKVLVEGPSKKDPMELRGRTENNRIVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELVV 469
               +  IG   +V ITD   ++L G+ V 
Sbjct: 412 FVGPHSLIGKFAEVTITDAFPNSLRGDFVT 441


>gi|260773261|ref|ZP_05882177.1| tRNA-i(6)A37 methylthiotransferase [Vibrio metschnikovii CIP 69.14]
 gi|260612400|gb|EEX37603.1| tRNA-i(6)A37 methylthiotransferase [Vibrio metschnikovii CIP 69.14]
          Length = 474

 Score =  473 bits (1218), Expect = e-131,   Method: Composition-based stats.
 Identities = 195/449 (43%), Positives = 285/449 (63%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++  +K++GCQMN YDS +M D+   + GYE     ++AD+++LNTC IREKA EKV+
Sbjct: 1   MSKKLLIKTWGCQMNEYDSSKMADLLNAANGYELTEEPEEADVLLLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR +NLK+ +      +   V    A  EG+ I  R+P V+V+ GPQT +RLPE+++
Sbjct: 61  HQLGRWKNLKDKKPGVVIGVGGCV----ATQEGDHIRERAPFVDVIFGPQTLHRLPEMIK 116

Query: 142 RARF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           +++     V+D  +   +KF+RL        +  G TAF++I EGC K+CT+CVVPYTRG
Sbjct: 117 QSQSTDAPVMDISFPEIEKFDRLP-----EPKAEGPTAFVSIMEGCSKYCTYCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR +  V+ E  +L   GV E+ LLGQNVNA+RG   DG  C+F++LL  ++ I G+
Sbjct: 172 EEVSRPMDDVLYEIAQLAAQGVREVNLLGQNVNAYRGPMHDGTICSFAELLRLVASIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+TTSHP + +D +I  + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II 
Sbjct: 232 DRIRFTTSHPLEFTDDIIAVYEDTPELVSFLHLPVQSGSDRILTMMKRPHTAIEYKSIIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R  RPDI ISSDFIVGFPGE+D+DF+ATM L+  + +  +FSF +SPR GTP ++   
Sbjct: 292 KLRKARPDIQISSDFIVGFPGESDNDFQATMKLIRDVDFDMSFSFIFSPRPGTPAADYPC 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439
            V E  K ERL  LQ+++  Q + ++   +     +L+E   K+   +L GR+   + V 
Sbjct: 352 DVSEETKKERLYELQQQINSQAMRYSRLMLDTEQRILVEGPSKKNLMELRGRTENNRVVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG  + V+I DV  ++L GEL+
Sbjct: 412 FEGSPDLIGQFVDVKIVDVFSNSLRGELI 440


>gi|237798430|ref|ZP_04586891.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Pseudomonas
           syringae pv. oryzae str. 1_6]
 gi|331021282|gb|EGI01339.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Pseudomonas
           syringae pv. oryzae str. 1_6]
          Length = 442

 Score =  473 bits (1218), Expect = e-131,   Method: Composition-based stats.
 Identities = 199/450 (44%), Positives = 283/450 (62%), Gaps = 13/450 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++ +++++GCQMN YDS RM D+    Q  E     +DAD+I+LNTC IRE+A ++VY
Sbjct: 1   MAKKLYIETHGCQMNEYDSSRMVDLLGEHQALEVTARAEDADVILLNTCSIRERAQDRVY 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S LGR R LK +      ++++ V GCVA  EG  I  R+P V+VV GPQT +RLPE+++
Sbjct: 61  SQLGRWRELKLA----NPEMVIAVGGCVASQEGAAIRDRAPYVDVVFGPQTLHRLPEMID 116

Query: 142 RARFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
            AR  +   VD  +   +KF+ L        R  G +A++++ EGC K+CTFCVVPYTRG
Sbjct: 117 AARITRLPQVDVSFPEIEKFDHLP-----EPRVDGPSAYVSVMEGCSKYCTFCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR    V+ E   L D GV E+TLLGQNVN +RG   DG     +DL+ +++ + G+
Sbjct: 172 EEVSRPFDDVLSEVTHLADYGVREVTLLGQNVNGYRGNTHDGRVADLADLIRAVAAVDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+RYTTSHP + SD LI+AH D+  L+ +LHLPVQSGSDRIL +M R HT  EY+  + 
Sbjct: 232 DRIRYTTSHPLEFSDSLIQAHADVPQLVKHLHLPVQSGSDRILAAMKRNHTTLEYKSRLR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R+  P I+ISSDFIVGFPGET+ DF  TM L++ +G+  +FSF YSPR GTP +++ +
Sbjct: 292 KLRAAVPGISISSDFIVGFPGETEKDFENTMKLIEDVGFDFSFSFIYSPRPGTPAADLKD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVV 439
              E +K ERL  LQ +L +Q    +   VG    +L+  +  K+ G+L GR+   + V 
Sbjct: 352 DTPEALKKERLAALQHRLNQQGFEISRQMVGSTQRILVTDYSKKDPGELQGRTENNRIVN 411

Query: 440 LNSKNH-NIGDIIKVRITDVKISTLYGELV 468
               N   IG    V I D +  +L G L+
Sbjct: 412 FRCDNPQLIGQFADVHIDDAQPHSLRGSLL 441


>gi|217972293|ref|YP_002357044.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Shewanella
           baltica OS223]
 gi|217497428|gb|ACK45621.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Shewanella baltica OS223]
          Length = 474

 Score =  473 bits (1218), Expect = e-131,   Method: Composition-based stats.
 Identities = 196/449 (43%), Positives = 283/449 (63%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++  +K++GCQMN YDS +M D+    QGY       +AD+++LNTC IREKA EKV+
Sbjct: 1   MSKKLHIKTWGCQMNEYDSSKMADLLGEYQGYTLTEEASEADILLLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR + LK+       +L++ V GCVA  EG+ I  R+  V+++ GPQT +RLPE++E
Sbjct: 61  HQLGRWKTLKDK----NPNLIIGVGGCVASQEGKAIKDRAQCVDIIFGPQTLHRLPEMIE 116

Query: 142 RARFG-KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           + R G K V+D  +   +KF+RL        R  G TAF++I EGC K+C+FCVVPYTRG
Sbjct: 117 QVRRGDKAVIDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCSKYCSFCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR    ++ E  +L + GV E+ LLGQNVNA+RG   DG  CTF++LL  ++ I G+
Sbjct: 172 EEVSRPSDDIILEIAQLAEQGVREVNLLGQNVNAYRGATHDGAICTFAELLRFVAAIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+TTSHP + +  +I  + D   L+ +LHLPVQSGSDRIL +M R H A EY+ II 
Sbjct: 232 DRIRFTTSHPIEFTQDIIDVYEDTPELVSFLHLPVQSGSDRILTAMKRGHMAIEYKSIIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           R+R  R  I ISSDFI+GFPGET +DF  TM L++ IG+  +FSF YS R GTP +++ +
Sbjct: 292 RLRKAREGIQISSDFIIGFPGETKEDFADTMKLIEDIGFDHSFSFIYSARPGTPAADLPD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVV 439
            VD   K +RL  LQ ++ +Q + ++   +G +  +L+E    K   +L GR+   + V 
Sbjct: 352 NVDMEEKKQRLAILQDRITQQAMRYSRHMMGTVQRILVEGPSVKNPMELRGRTENNRVVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                 +IG  + V I DV  ++L G  +
Sbjct: 412 FEGLPKHIGTFVDVEIVDVYTNSLRGVFI 440


>gi|119897069|ref|YP_932282.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Azoarcus sp.
           BH72]
 gi|229890447|sp|A1K3J0|MIAB_AZOSB RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|119669482|emb|CAL93395.1| Conserved Hypothetical protein [Azoarcus sp. BH72]
          Length = 449

 Score =  473 bits (1218), Expect = e-131,   Method: Composition-based stats.
 Identities = 196/454 (43%), Positives = 297/454 (65%), Gaps = 18/454 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ +++++GCQMN YDS +M D+  + +G  + ++ ++AD+I+ NTC +REKA EKV+  
Sbjct: 2   KKLYIRTFGCQMNEYDSEKMADVLGAGEGIAKTDNPEEADVILFNTCSVREKAQEKVFHD 61

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE-R 142
           LGR+++LK        DL++ V GCVA  EG+ I+ R+P V+VV GPQT +RLP L+  R
Sbjct: 62  LGRVKHLKQ----LKPDLIIGVGGCVASQEGDAIVARAPYVDVVFGPQTLHRLPALIAAR 117

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            + G+  VD  +   +KF+ +        R  G +AF++I EGC K+CTFCVVPYTRG E
Sbjct: 118 KQSGRSQVDISFPEIEKFDAMPPA-----RVEGASAFVSIMEGCSKYCTFCVVPYTRGEE 172

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD--GEKCTFSDLLYSLSEIKGL 260
           ISR L  V+ E   L + GV E+TLLGQNVNAWRG+ +   GE+  F+ LL  ++EI G+
Sbjct: 173 ISRPLEDVLAEIAGLAEQGVKEVTLLGQNVNAWRGEIVRDAGEEGDFAFLLECVAEIPGI 232

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+RYTTSHPR+M+  L  A+  +  L+  LHLPVQSGSDRIL +M R ++  E++ I+ 
Sbjct: 233 ERIRYTTSHPREMTQRLFDAYVKIPKLVSQLHLPVQSGSDRILAAMKRGYSVLEFKSIVR 292

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R+ RPD+++SSDFIVGFPGET++DF  TM L+D++G+  +FSF YS R GTP +++ +
Sbjct: 293 KLRAARPDLSLSSDFIVGFPGETEEDFEKTMKLIDEVGFDGSFSFVYSARPGTPAADLED 352

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLVGRSPWLQSVV 439
            V +  K   L  LQK++ EQ  + + + VG    +L+E   ++   +L+GR+   + V 
Sbjct: 353 PVPQETKLAWLARLQKRIDEQAQAVSQSMVGSAQRILVEGVSRKSAEELMGRTDNNRVVN 412

Query: 440 LNSK----NHNIGDIIKVRITDVKISTLYGELVV 469
             +     +  +G  I+VRIT     +L GE++ 
Sbjct: 413 FPAPSPHRDRLVGQFIEVRITSALPHSLRGEILT 446


>gi|114331766|ref|YP_747988.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Nitrosomonas eutropha
           C91]
 gi|122313484|sp|Q0AF59|MIAB_NITEC RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|114308780|gb|ABI60023.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Nitrosomonas eutropha
           C91]
          Length = 443

 Score =  473 bits (1218), Expect = e-131,   Method: Composition-based stats.
 Identities = 207/448 (46%), Positives = 288/448 (64%), Gaps = 12/448 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQ-GYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           +  + ++K++GCQMN YDS +M D+  S+   E     ++ADLI+ NTC +REKA EKV+
Sbjct: 1   MSSKLYIKTFGCQMNEYDSAKMADILLSEKNMELTEVPEEADLILFNTCSVREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR+R+LKNS      DLL+ V GCVA  EG EI+RR+P V++V GPQT +RLPEL++
Sbjct: 61  HDLGRVRHLKNS----KPDLLIGVGGCVASQEGSEIVRRAPFVDLVFGPQTLHRLPELID 116

Query: 142 -RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
            R R G+  VD  +   +KF+RL        R  G TAF++I EGC K+C+FCVVPYTRG
Sbjct: 117 ARRRTGQSQVDITFPEIEKFDRLPPA-----RTTGATAFVSIMEGCSKYCSFCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR L  V+ E   L+  GV E+TLLGQNVNA+  K        F+ LL  + EI GL
Sbjct: 172 EEVSRPLDDVLTEVAGLVIQGVKEVTLLGQNVNAYYDKTSGEGDIDFATLLDYIHEIPGL 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
           VR+RYTTSHPR+ +  LI+ +  L  L+ ++HLP+QSGSDRIL +M R +T  EY+ II 
Sbjct: 232 VRIRYTTSHPREFTARLIETYQRLPKLVGHVHLPIQSGSDRILAAMKRGYTIIEYKSIIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R++RP+I+ISSDFIVGFPGETD DF  TM L+D + + ++FSF YSPR GTP S++ +
Sbjct: 292 KLRTIRPNISISSDFIVGFPGETDTDFEETMKLIDDVKFDESFSFIYSPRPGTPASDLPD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVV 439
                +K  RL  LQ+K++      + + V  I  VL+E    K+  +  GR+   + V 
Sbjct: 352 DTPYRIKLARLHQLQEKIQRNAQMISQSMVDTIQRVLVEGPSKKDPNEFCGRTDNNRVVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGEL 467
                  +G  + ++IT V   TL GE+
Sbjct: 412 FAGHAGLVGSFVDIKITAVSSHTLRGEI 439


>gi|229111245|ref|ZP_04240799.1| hypothetical protein bcere0018_34910 [Bacillus cereus Rock1-15]
 gi|229129049|ref|ZP_04258022.1| hypothetical protein bcere0015_34940 [Bacillus cereus BDRD-Cer4]
 gi|229146344|ref|ZP_04274715.1| hypothetical protein bcere0012_34870 [Bacillus cereus BDRD-ST24]
 gi|296504271|ref|YP_003665971.1| tRNA 2-methylthioadenosine synthase [Bacillus thuringiensis BMB171]
 gi|228636977|gb|EEK93436.1| hypothetical protein bcere0012_34870 [Bacillus cereus BDRD-ST24]
 gi|228654286|gb|EEL10151.1| hypothetical protein bcere0015_34940 [Bacillus cereus BDRD-Cer4]
 gi|228672239|gb|EEL27529.1| hypothetical protein bcere0018_34910 [Bacillus cereus Rock1-15]
 gi|296325323|gb|ADH08251.1| tRNA 2-methylthioadenosine synthase [Bacillus thuringiensis BMB171]
          Length = 509

 Score =  473 bits (1217), Expect = e-131,   Method: Composition-based stats.
 Identities = 183/450 (40%), Positives = 269/450 (59%), Gaps = 15/450 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
             ++F++++YGCQMN +D+  M  +F + GYE   S +DAD+++LNTC IRE A  KV+ 
Sbjct: 64  TGRKFYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFG 123

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELL 140
            LG +++LK    +   DLL+ V GC++Q E    +I++++  V++V G    +RLP +L
Sbjct: 124 ELGHLKSLK----RRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYIL 179

Query: 141 ERARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           + A F K  V   +S E D  E L  V     R+  + A++ I  GCDKFCT+C+VPYTR
Sbjct: 180 KDAMFSKETVVEVWSKEGDVIENLPKV-----RRGDIKAWVNIMYGCDKFCTYCIVPYTR 234

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G E SR    ++ E R L  NG  EITLLGQNVNA  GK  +  +    DL+  L ++  
Sbjct: 235 GKERSRRPEDIIQEIRHLAANGYKEITLLGQNVNA-YGKDFEDIEYGLGDLMDELRKVD- 292

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           + R+R+TTSHPRD  D LI+  G    L+ ++HLPVQSGS  +LK M R+++   Y +++
Sbjct: 293 IARIRFTTSHPRDFDDHLIEVLGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELV 352

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            +I+   PD  +++D IVGFP ETD+ F  TM L  ++G+  AF+F YSPR GTP + M 
Sbjct: 353 RKIKEAIPDAVLTTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMK 412

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSV 438
           + V   VK ERL  L   +    +  N    GQI+EVL++   K   + L G +   + V
Sbjct: 413 DNVPMEVKKERLQRLNTLVNTLAIEKNSRYKGQIVEVLVDGESKNNPEVLAGYTRTNKLV 472

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468
              +    IG ++KV+IT+ K  +L GELV
Sbjct: 473 NFVASKSLIGQLVKVKITEAKTWSLNGELV 502


>gi|238028582|ref|YP_002912813.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Burkholderia
           glumae BGR1]
 gi|237877776|gb|ACR30109.1| TRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia glumae BGR1]
          Length = 457

 Score =  473 bits (1217), Expect = e-131,   Method: Composition-based stats.
 Identities = 192/456 (42%), Positives = 288/456 (63%), Gaps = 18/456 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++ +VK++GCQMN YDS +M D+   ++G E+ +  +DAD+I+ NTC +REKA EKV+
Sbjct: 1   MTKKVYVKTFGCQMNEYDSDKMVDVLNAAEGLEKTDRPEDADVILFNTCSVREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S LGR+R LK +       L++ V GCVA  EG  I+ R+P V++V GPQT +RLP++++
Sbjct: 61  SDLGRVRELKEA----KPGLIIGVGGCVASQEGAAIVARAPYVDLVFGPQTLHRLPKMID 116

Query: 142 RARF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
             R  G+  VD  +   +KF+ L        R  G +AF++I EGC K+C++CVVPYTRG
Sbjct: 117 ARRASGRSQVDITFPEIEKFDHLPPA-----RVEGPSAFVSIMEGCSKYCSYCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG--EKCTFSDLLYSLSEIK 258
            E+SR L  V+ E   L D GV E+TLLGQNVNA+RG    G  E   F+ L+  ++++ 
Sbjct: 172 DEVSRPLDDVLTEIAGLADQGVREVTLLGQNVNAYRGALTAGSTEIADFATLIEYVADLP 231

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           G+ R+RYTTSHP++ +  L++ +  +  L+ +LHLPVQ GSDR+L +M R +T  EY+ +
Sbjct: 232 GIERIRYTTSHPKEFTQRLLEVYARVPKLVNHLHLPVQHGSDRVLMAMKRGYTVLEYKSL 291

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           I ++R++RP +++S+D IVGFPGET+ DF  TM LV ++ Y  +FSF YSPR GTP +N+
Sbjct: 292 IRKLRAIRPGLSLSTDIIVGFPGETEADFDKTMALVHEMRYDTSFSFIYSPRPGTPAANL 351

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQS 437
            +     VK +RL  LQ  + E     + + VG +  +L+E    K+  +L GR+   + 
Sbjct: 352 HDDTPREVKLKRLQHLQATIEENVAHISASMVGGVERILVEGPSRKDPNELAGRTENNRV 411

Query: 438 VVLNSK----NHNIGDIIKVRITDVKISTLYGELVV 469
           V   +        IG +I VRI      +L GELV+
Sbjct: 412 VNFPAPLASHARLIGQMIDVRINHAYPHSLRGELVL 447


>gi|329118626|ref|ZP_08247330.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Neisseria bacilliformis
           ATCC BAA-1200]
 gi|327465361|gb|EGF11642.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Neisseria bacilliformis
           ATCC BAA-1200]
          Length = 443

 Score =  473 bits (1217), Expect = e-131,   Method: Composition-based stats.
 Identities = 194/447 (43%), Positives = 279/447 (62%), Gaps = 13/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQ--GYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           ++ F++++GCQMN YDS +M  +   +  G E+V   DDAD+I+ NTC +REKA EKV+S
Sbjct: 2   KKVFIRTFGCQMNEYDSEKMLAVLEEEHGGIEQVAEPDDADIILFNTCSVREKAQEKVFS 61

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-E 141
            LGR++ LK         L++ VAGCVA  EGE I++R+P V+VV GPQT +RLP+++ +
Sbjct: 62  DLGRVKPLKEK----NPKLIIGVAGCVASQEGENIVKRAPYVDVVFGPQTLHRLPKMIAD 117

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           +   G   VD  +   +KF+ L        R  G +AF++I EGC K+C+FCVVPYTRG 
Sbjct: 118 KETSGYAQVDISFPEIEKFDHLPPA-----RVEGGSAFISIMEGCSKYCSFCVVPYTRGE 172

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR L+ V+ E   L   GV EI LLGQNVNA+RG   DG  C F+ LL  + EI G+ 
Sbjct: 173 EFSRPLNDVLTEIAGLAQQGVKEINLLGQNVNAYRGAMDDGGICDFATLLRIVHEIPGIE 232

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           RLR+TTSHPR+ +D +I+ + DL  L+ +LHLP+QSGSDR+L +M R +TA EY+ II +
Sbjct: 233 RLRFTTSHPREFTDAIIECYRDLPKLVSHLHLPIQSGSDRVLSAMKRGYTALEYKSIIRK 292

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R++RPD+ +SSDFIVGFPGET+ +F  T+ LV  I +  +F F YSPR GTP +N+ + 
Sbjct: 293 LRAIRPDLCLSSDFIVGFPGETEREFEQTLKLVKDIAFDLSFVFIYSPRPGTPAANLPDD 352

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVL 440
                K  RL  L + +  +    N   +G +   L+E    K+  +L  R+   + V  
Sbjct: 353 TPHAEKVRRLEALNEVIEAETARINQTMLGTVQRCLVEGISKKDPDQLQARTANNRVVNF 412

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGEL 467
               + I  ++ + IT+    +L G L
Sbjct: 413 TGGPNLINQMVDLEITEAFTFSLRGRL 439


>gi|301631123|ref|XP_002944656.1| PREDICTED: (Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB-like, partial [Xenopus (Silurana) tropicalis]
          Length = 437

 Score =  473 bits (1217), Expect = e-131,   Method: Composition-based stats.
 Identities = 203/446 (45%), Positives = 285/446 (63%), Gaps = 18/446 (4%)

Query: 30  KSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           K++GCQMN YDS +M  +   +QG E  +  + ADLI+ NTC +REKA EKV+S LGRI+
Sbjct: 1   KTFGCQMNEYDSDKMVAVLGAAQGDEPTDDPEAADLILFNTCSVREKAQEKVFSDLGRIK 60

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE-RARFGK 147
           +LK         +L+ V GCVA  EG EI++R+P V+VV GPQT +RLPELL  RA   K
Sbjct: 61  HLKEK------GVLIGVGGCVASQEGAEIIQRAPFVDVVFGPQTLHRLPELLNARAAKAK 114

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
             VD  +   +KF+ L        R  G +AF++I EGC K+C++CVVPYTRG E+SR  
Sbjct: 115 PQVDISFPEIEKFDHLPPA-----RVEGASAFVSIMEGCSKYCSYCVVPYTRGEEVSRPF 169

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKG----LDGEKCTFSDLLYSLSEIKGLVRL 263
             V+ E   L D GV E+TLLGQNVNA+RG       +GEK  F+ LL  ++EI G+ R+
Sbjct: 170 EDVLVEVAGLADQGVKEVTLLGQNVNAYRGAMGNTAENGEKADFALLLEYVAEIPGIERI 229

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           RYTTSHP + +  LI+A+  +  L+ +LHLPVQ GSDRIL +M R ++A EY+  + ++R
Sbjct: 230 RYTTSHPNEFTPRLIEAYAKIPKLVSHLHLPVQHGSDRILMAMKRGYSAMEYKSTVRKLR 289

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           ++RPD+A+SSDFIVGFPGET++DF+  M L+  + +  +FSF +SPR GTP +N+ +   
Sbjct: 290 AIRPDMAMSSDFIVGFPGETEEDFQKMMKLIHDVRFDNSFSFIFSPRPGTPAANLPDDTP 349

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRSPWLQSVVLNS 442
            +VK  RL  LQ  + +     +   VG +  +L+E H K   G+L+GR+   + V    
Sbjct: 350 HDVKLRRLQELQAVINQHIKDISLERVGTVQRLLVEGHSKRGNGELMGRTECHRVVNFPG 409

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
               IG II V+IT+    TL GE++
Sbjct: 410 HTRLIGQIIDVKITEAMTYTLRGEVL 435


>gi|148260356|ref|YP_001234483.1| RNA modification protein [Acidiphilium cryptum JF-5]
 gi|229890413|sp|A5FY82|MIAB_ACICJ RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|146402037|gb|ABQ30564.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Acidiphilium cryptum
           JF-5]
          Length = 450

 Score =  473 bits (1217), Expect = e-131,   Method: Composition-based stats.
 Identities = 239/451 (52%), Positives = 305/451 (67%), Gaps = 9/451 (1%)

Query: 18  VDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA 77
           + +    +   + ++GCQMNVYDS RM D+    GY +V +  DAD+++LNTCHIRE+A+
Sbjct: 1   MTETASRRTLHITTWGCQMNVYDSGRMADVLRPLGYRQVAT-QDADMVILNTCHIRERAS 59

Query: 78  EKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLP 137
           EK++S LGR+R LK SR   GG +++ VAGCVAQAEG EIL R+P V++VVG Q Y+RLP
Sbjct: 60  EKLFSELGRLRALKESR---GGAMMIAVAGCVAQAEGAEILARAPHVDLVVGSQAYHRLP 116

Query: 138 ELLERARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
           EL+      +R V+DTD+    KF+ L          +G  AFL IQEGCDKFCTFCVVP
Sbjct: 117 ELIAEIEAKRRAVIDTDFPAAQKFDLLP----EDQASQGPIAFLAIQEGCDKFCTFCVVP 172

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256
           YTRG E SR  + ++ EAR+L+  G  EI LLGQNVNAW G+  DG     + LL  L++
Sbjct: 173 YTRGAEASRPAAAILAEARRLVAGGAREIALLGQNVNAWHGEAPDGATWNLARLLAELAD 232

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           I GL RLRYTTSHPRDM   LI AH D   LMP+LHLPVQSGSD IL  MNRRH A  +R
Sbjct: 233 IDGLARLRYTTSHPRDMDAALIAAHRDNPKLMPFLHLPVQSGSDAILARMNRRHGADLFR 292

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
           +I   +R+ RPDIA+SSDFIVGFPGETD DF ATM LV + G+A A+SFKYS R GTP +
Sbjct: 293 RIAGELRAARPDIALSSDFIVGFPGETDADFAATMRLVRETGFALAYSFKYSRRPGTPAA 352

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQ 436
           +  +Q+DE VK  RL  LQ  LR+QQ +FN A VG+  EVL    G+  G+  GRSP+LQ
Sbjct: 353 DAADQIDEAVKDARLQELQAVLRDQQHAFNRAQVGRSFEVLFTGPGRHPGQSAGRSPYLQ 412

Query: 437 SVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
            VV+++ +   G +  V+I     ++L   L
Sbjct: 413 PVVVDNADIPPGTLRTVKIVQSNPNSLMASL 443


>gi|91785150|ref|YP_560356.1| tRNA-i(6)A37modification enzyme MiaB [Burkholderia xenovorans
           LB400]
 gi|123168088|sp|Q13UD5|MIAB_BURXL RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|91689104|gb|ABE32304.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia xenovorans
           LB400]
          Length = 457

 Score =  473 bits (1217), Expect = e-131,   Method: Composition-based stats.
 Identities = 193/456 (42%), Positives = 291/456 (63%), Gaps = 18/456 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++ +VK++GCQMN YDS +M D+   ++G  + ++ +DAD+I+ NTC +REKA EKV+
Sbjct: 1   MTKKVYVKTFGCQMNEYDSDKMVDVLGAAEGLVKTDTPEDADVILFNTCSVREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S LGR+R LK +      +L++ V GCVA  EG  I+ R+P V++V GPQT +RLP++++
Sbjct: 61  SDLGRVRELKEA----NPNLIIGVGGCVASQEGASIVARAPYVDLVFGPQTLHRLPQMID 116

Query: 142 RARF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           + R  G+  VD  +   +KF+ L        R  G +AF++I EGC K+C++CVVPYTRG
Sbjct: 117 KRRESGRAQVDISFPEIEKFDHLPPA-----RVDGPSAFVSIMEGCSKYCSYCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG--EKCTFSDLLYSLSEIK 258
            E+SR L  V+ E   L D GV E+TLLGQNVNA+R     G  E   F+ L+  +++I 
Sbjct: 172 EEVSRPLDDVLTEIAGLADQGVREVTLLGQNVNAYRAGLTLGSTEIADFAQLIEYVADIP 231

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           G+ R+RYTTSHP++ +  LI  +  +  L+ +LHLPVQ GSDRIL +M R +T  EY+ +
Sbjct: 232 GIERIRYTTSHPKEFTQRLIDTYAKVPKLVSHLHLPVQHGSDRILMAMKRGYTVLEYKSV 291

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           I ++R++RPD+++S+D IVGFPGET++DF   M LV ++ Y  +FSF YSPR GTP +N+
Sbjct: 292 IRKLRAIRPDLSLSTDLIVGFPGETEEDFDKMMTLVHEMKYDTSFSFIYSPRPGTPAANL 351

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQS 437
            +     VK  RL  LQ  + E     +D+ VG+I  +L+E+   K+  +L GR+   + 
Sbjct: 352 HDDTPREVKLRRLQHLQATIEENVQRISDSMVGKIERILVERPARKDPNELAGRTENNRV 411

Query: 438 VVLNSK----NHNIGDIIKVRITDVKISTLYGELVV 469
           V   +        IG ++ V+I      +L GELV+
Sbjct: 412 VNFPAPVASHARLIGQMVDVKIVKAYPHSLRGELVL 447


>gi|186475181|ref|YP_001856651.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Burkholderia
           phymatum STM815]
 gi|229890465|sp|B2JD88|MIAB_BURP8 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|184191640|gb|ACC69605.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia phymatum
           STM815]
          Length = 456

 Score =  473 bits (1217), Expect = e-131,   Method: Composition-based stats.
 Identities = 195/456 (42%), Positives = 290/456 (63%), Gaps = 18/456 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++ +VK++GCQMN YDS +M D+   ++G  + ++ +DAD+I+ NTC +REKA EKV+
Sbjct: 1   MTKKVYVKTFGCQMNEYDSDKMVDVLGAAEGLVKTDTPEDADVILFNTCSVREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S LGR+R LK +      +LL+ V GCVA  EG  I+ R+P V++V GPQT +RLP++++
Sbjct: 61  SDLGRVRELKEA----NPNLLIGVGGCVASQEGASIVARAPYVDLVFGPQTLHRLPQMID 116

Query: 142 RARF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           + R  G+  VD  +   +KF+ L        R  G +AF++I EGC K+C++CVVPYTRG
Sbjct: 117 QRRASGRPQVDITFPEIEKFDHLPPA-----RIDGPSAFVSIMEGCSKYCSYCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG--EKCTFSDLLYSLSEIK 258
            E+SR L  V+ E   L D GV E+TLLGQNVNA+RG    G  E   F+ L+  +++I 
Sbjct: 172 EEVSRPLDDVLTEIAGLADQGVREVTLLGQNVNAYRGAMTLGATEIADFATLIEYVADIP 231

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           G+ R+RYTTSHP++ +  LI  +  +  L+ +LHLPVQ GSDRIL +M R +T  EY+ +
Sbjct: 232 GIERIRYTTSHPKEFTQRLIDTYAKVPKLVSHLHLPVQHGSDRILMAMKRGYTVLEYKSV 291

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           I ++R++RPD+++S+D IVGFPGET++DF   M LV  + Y  +FSF YSPR GTP +N+
Sbjct: 292 IRKLRAIRPDLSLSTDMIVGFPGETEEDFDKMMQLVHDMSYDTSFSFIYSPRPGTPAANL 351

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQS 437
            +     VK  RL  LQ  + E     + A VG++  +L+E+   K+  +L GR+   + 
Sbjct: 352 QDDTPREVKLRRLQHLQATIEENVQRISQAMVGKVERILVERPARKDPNELAGRTENNRV 411

Query: 438 VVLNSK----NHNIGDIIKVRITDVKISTLYGELVV 469
           V   +        IG +I V+I      +L GELV+
Sbjct: 412 VNFPAPVETHARLIGQMIDVKIVHAYPHSLRGELVM 447


>gi|196034172|ref|ZP_03101582.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus W]
 gi|196044479|ref|ZP_03111714.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus 03BB108]
 gi|218904900|ref|YP_002452734.1| hypothetical protein BCAH820_3784 [Bacillus cereus AH820]
 gi|228916410|ref|ZP_04079977.1| hypothetical protein bthur0012_36250 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228928822|ref|ZP_04091854.1| hypothetical protein bthur0010_35140 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228935069|ref|ZP_04097899.1| hypothetical protein bthur0009_35230 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228947493|ref|ZP_04109783.1| hypothetical protein bthur0007_36210 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|229123286|ref|ZP_04252490.1| hypothetical protein bcere0016_35750 [Bacillus cereus 95/8201]
 gi|229186011|ref|ZP_04313181.1| hypothetical protein bcere0004_35580 [Bacillus cereus BGSC 6E1]
 gi|301055262|ref|YP_003793473.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus anthracis CI]
 gi|229890419|sp|B7JJ50|MIAB_BACC0 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|229890697|sp|A0RHE4|MIAB_BACAH RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|195993246|gb|EDX57204.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus W]
 gi|196024514|gb|EDX63186.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus 03BB108]
 gi|218534759|gb|ACK87157.1| conserved hypothetical protein [Bacillus cereus AH820]
 gi|228597430|gb|EEK55080.1| hypothetical protein bcere0004_35580 [Bacillus cereus BGSC 6E1]
 gi|228660062|gb|EEL15698.1| hypothetical protein bcere0016_35750 [Bacillus cereus 95/8201]
 gi|228812013|gb|EEM58344.1| hypothetical protein bthur0007_36210 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228824639|gb|EEM70441.1| hypothetical protein bthur0009_35230 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228830629|gb|EEM76234.1| hypothetical protein bthur0010_35140 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228843213|gb|EEM88294.1| hypothetical protein bthur0012_36250 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|300377431|gb|ADK06335.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus biovar
           anthracis str. CI]
          Length = 509

 Score =  473 bits (1217), Expect = e-131,   Method: Composition-based stats.
 Identities = 183/450 (40%), Positives = 271/450 (60%), Gaps = 15/450 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
             ++F++++YGCQMN +D+  M  +F + GYE   S +DAD+++LNTC IRE A  KV+ 
Sbjct: 64  TGRKFYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFG 123

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELL 140
            LG +++LK    +   DLL+ V GC++Q E    +I++++  V++V G    +RLP +L
Sbjct: 124 ELGHLKSLK----RRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYIL 179

Query: 141 ERARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           + A F K  V   +S E D  E L  V     R+  + A++ I  GCDKFCT+C+VPYTR
Sbjct: 180 KDAMFSKETVVEVWSKEGDVIENLPKV-----RRGDIKAWVNIMYGCDKFCTYCIVPYTR 234

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G E SR    ++ E R L  NG  EITLLGQNVNA  GK  +  +    DL+  L ++  
Sbjct: 235 GKERSRRPEDIIQEIRHLAANGYKEITLLGQNVNA-YGKDFEDIEYGLGDLMDELRKVD- 292

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           + R+R+TTSHPRD  D LI+  G    L+ ++HLPVQSGS  +LK M R+++   Y +++
Sbjct: 293 IARIRFTTSHPRDFDDHLIEVLGKGGNLVEHIHLPVQSGSTEMLKIMARKYSREHYLELV 352

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            +I+   P+  +++D IVGFP ETD+ F  TM L  ++G+  AF+F YSPR GTP + M 
Sbjct: 353 RKIKEAIPNAVLTTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMK 412

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSV 438
           + V   VK ERL  L   + +  +  ND   GQI+EVL++   K   + L G +   + V
Sbjct: 413 DNVPMEVKKERLQRLNALVNKLAIEKNDRYKGQIVEVLVDGESKNNPEVLAGYTRTNKLV 472

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468
              +    IG ++KV++TD K  +L GELV
Sbjct: 473 NFVAPKSLIGQLVKVKVTDAKTWSLNGELV 502


>gi|229151973|ref|ZP_04280169.1| hypothetical protein bcere0011_35140 [Bacillus cereus m1550]
 gi|228631528|gb|EEK88161.1| hypothetical protein bcere0011_35140 [Bacillus cereus m1550]
          Length = 509

 Score =  473 bits (1217), Expect = e-131,   Method: Composition-based stats.
 Identities = 183/450 (40%), Positives = 269/450 (59%), Gaps = 15/450 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
             ++F++++YGCQMN +D+  M  +F + GYE   S +DAD+++LNTC IRE A  KV+ 
Sbjct: 64  TGRKFYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFG 123

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELL 140
            LG +++LK    +   DLL+ V GC++Q E    +I++++  V++V G    +RLP +L
Sbjct: 124 ELGHLKSLK----RRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYIL 179

Query: 141 ERARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           + A F K  V   +S E D  E L  V     R+  + A++ I  GCDKFCT+C+VPYTR
Sbjct: 180 KDAMFSKETVVEVWSKEGDVIENLPKV-----RRGDIKAWVNIMYGCDKFCTYCIVPYTR 234

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G E SR    ++ E R L  NG  EITLLGQNVNA  GK  +  +    DL+  L ++  
Sbjct: 235 GKERSRRPEDIIQEIRHLAANGYKEITLLGQNVNA-YGKDFEDIEYGLGDLMDELRKVD- 292

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           + R+R+TTSHPRD  D LI+  G    L+ ++HLPVQSGS  +LK M R+++   Y +++
Sbjct: 293 IARIRFTTSHPRDFDDHLIEVLGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELV 352

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            +I+   PD  +++D IVGFP ETD+ F  TM L  ++G+  AF+F YSPR GTP + M 
Sbjct: 353 RKIKEAIPDAVLTTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMK 412

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSV 438
           + V   VK ERL  L   +    +  N    GQI+EVL++   K   + L G +   + V
Sbjct: 413 DNVPMEVKKERLQRLNTLVNTLAIEKNSRYKGQIVEVLVDGESKNNPEVLAGYTRTNKLV 472

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468
              +    IG ++KV+IT+ K  +L GELV
Sbjct: 473 NFVASKSLIGQLVKVKITEAKTWSLNGELV 502


>gi|163941460|ref|YP_001646344.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus
           weihenstephanensis KBAB4]
 gi|229890426|sp|A9VS16|MIAB_BACWK RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|163863657|gb|ABY44716.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus
           weihenstephanensis KBAB4]
          Length = 509

 Score =  473 bits (1217), Expect = e-131,   Method: Composition-based stats.
 Identities = 185/450 (41%), Positives = 271/450 (60%), Gaps = 15/450 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
             ++F++++YGCQMN +D+  M  +F + GYE   S ++AD+I+LNTC IRE A  KV+ 
Sbjct: 64  AGRKFYIRTYGCQMNEHDTEVMAGIFTTLGYEPTFSTEEADVILLNTCAIRENAENKVFG 123

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELL 140
            LG +++LK    +   DL++ V GC++Q E    +I++++  V++V G    +RLP +L
Sbjct: 124 ELGHLKSLK----RRNPDLIIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYIL 179

Query: 141 ERARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           + A F K  V   +S E D  E L  V     R+  + A++ I  GCDKFCT+C+VPYTR
Sbjct: 180 KDAMFSKETVVEVWSKEGDVIENLPKV-----RRGDIKAWVNIMYGCDKFCTYCIVPYTR 234

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G E SR    ++ E R L  NG  EITLLGQNVNA  GK  +  +    DL+  L +I  
Sbjct: 235 GKERSRRPEDIIKEIRHLAANGYKEITLLGQNVNA-YGKDFEDIQYGLGDLMDELRKID- 292

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           + R+R+TTSHPRD  D LI   G    L+ ++HLPVQSGS  +LK M R+++   Y +++
Sbjct: 293 IARIRFTTSHPRDFDDHLIDVLGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELV 352

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            +I+   P+  +++D IVGFP ETD+ F  TM L  ++G+  AF+F YSPR GTP + M 
Sbjct: 353 RKIKETIPNAVLTTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMQ 412

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSV 438
           + V   VK ERL  L   + E  V+ N   +GQI+EVL+E   K   + L G +   + V
Sbjct: 413 DNVPMEVKKERLQRLNTLVNEYGVNKNKRYIGQIVEVLVEGESKNNPEVLAGYTRTNKLV 472

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468
              +    IG ++KV+IT+ K  +L GELV
Sbjct: 473 NFVASKSLIGQLVKVKITEAKTWSLNGELV 502


>gi|228954049|ref|ZP_04116078.1| hypothetical protein bthur0006_34210 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228805615|gb|EEM52205.1| hypothetical protein bthur0006_34210 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
          Length = 509

 Score =  473 bits (1217), Expect = e-131,   Method: Composition-based stats.
 Identities = 183/450 (40%), Positives = 270/450 (60%), Gaps = 15/450 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
             ++F++++YGCQMN +D+  M  +F + GYE   S +DAD+++LNTC IRE A  KV+ 
Sbjct: 64  TGRKFYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFG 123

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELL 140
            LG +++LK    +   DLL+ V GC++Q E    +I++++  V++V G    +RLP +L
Sbjct: 124 ELGHLKSLK----RRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYIL 179

Query: 141 ERARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           + A F K  V   +S E D  E L  V     R+  + A++ I  GCDKFCT+C+VPYTR
Sbjct: 180 KDAMFSKETVVEVWSKEGDVIENLPKV-----RRGDIKAWVNIMYGCDKFCTYCIVPYTR 234

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G E SR    ++ E R L  NG  EITLLGQNVNA  GK  +  +    DL+  L ++  
Sbjct: 235 GKERSRRPEDIIQEIRHLAANGYKEITLLGQNVNA-YGKDFEDIEYGLGDLMDELRKVD- 292

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           + R+R+TTSHPRD  D LI+  G    L+ ++HLPVQSGS  +LK M R+++   Y +++
Sbjct: 293 IARIRFTTSHPRDFDDHLIEVLGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELV 352

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            +I+   PD+ +++D IVGFP ETD+ F  TM L  ++G+  AF+F YSPR GTP + M 
Sbjct: 353 RKIKEAIPDVVLTTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMK 412

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSV 438
           + V   VK ERL  L   +    +  N    GQI+EVL++   K   + L G +   + V
Sbjct: 413 DNVPMEVKKERLQRLNTLVNTLAIEKNSRYKGQIVEVLVDGESKNNPEVLAGYTRTNKLV 472

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468
              +    IG ++KV+IT+ K  +L GELV
Sbjct: 473 NFVASKSLIGQLVKVKITEAKTWSLNGELV 502


>gi|240013351|ref|ZP_04720264.1| Bifunctional enzyme involved in thiolation and methylation of tRNA
           [Neisseria gonorrhoeae DGI18]
 gi|240015796|ref|ZP_04722336.1| Bifunctional enzyme involved in thiolation and methylation of tRNA
           [Neisseria gonorrhoeae FA6140]
 gi|240112139|ref|ZP_04726629.1| Bifunctional enzyme involved in thiolation and methylation of tRNA
           [Neisseria gonorrhoeae MS11]
 gi|240117089|ref|ZP_04731151.1| Bifunctional enzyme involved in thiolation and methylation of tRNA
           [Neisseria gonorrhoeae PID1]
 gi|240120424|ref|ZP_04733386.1| Bifunctional enzyme involved in thiolation and methylation of tRNA
           [Neisseria gonorrhoeae PID24-1]
 gi|268598198|ref|ZP_06132365.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11]
 gi|268602776|ref|ZP_06136943.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1]
 gi|268582329|gb|EEZ47005.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11]
 gi|268586907|gb|EEZ51583.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1]
          Length = 442

 Score =  473 bits (1217), Expect = e-131,   Method: Composition-based stats.
 Identities = 195/448 (43%), Positives = 281/448 (62%), Gaps = 13/448 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQ--GYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           ++ F++++GCQMN YDS +M  +   +  G E+V   D+AD+I+ NTC +REKA EKV+S
Sbjct: 2   KKVFIRTFGCQMNEYDSEKMLSVLAEEHGGIEQVTQADEADIILFNTCSVREKAQEKVFS 61

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-E 141
            LGR+R LK         L++ VAGCVA  EGE I++R+P V+VV GPQT +RLP+++ +
Sbjct: 62  DLGRVRPLKEK----NPGLIIGVAGCVASQEGENIIKRAPYVDVVFGPQTLHRLPKMIVD 117

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           +   G   VD  +   +KF+ L        R  G  AF++I EGC K+C+FCVVPYTRG 
Sbjct: 118 KETSGLSQVDISFPEIEKFDHLPPA-----RVEGGAAFVSIMEGCSKYCSFCVVPYTRGE 172

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR L+ V+ E   L   GV EI LLGQNVNA+RG+  DGE C F+ LL  + EI G+ 
Sbjct: 173 EFSRPLNDVLAEIANLAQQGVKEINLLGQNVNAYRGEMDDGEICDFATLLRIVHEIPGIE 232

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHPR+ +D +I+ + DL  L+ +LHLP+QSGSDR+L +M R +TA EY+ II +
Sbjct: 233 RMRFTTSHPREFTDSIIECYRDLPKLVSHLHLPIQSGSDRVLSAMKRGYTALEYKSIIRK 292

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R++RPD+ +SSDFIVGFPGET+ +F  T+ LV  I +  +F F YSPR GTP +N+ + 
Sbjct: 293 LRAIRPDLCLSSDFIVGFPGETEREFEQTLKLVKDIAFDLSFVFIYSPRPGTPAANLPDD 352

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVL 440
                K  RL  L + +  +    N   +G +   L+E    K+  +L  R+   + V  
Sbjct: 353 TPHEEKVRRLEALNEVIEAETARINQTMIGTVQRCLVEGISKKDPDQLQARTANNRVVNF 412

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 I  +I + IT+    +L G++V
Sbjct: 413 TGTPDMINQMIDLEITEAYTFSLRGKIV 440


>gi|187477340|ref|YP_785364.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bordetella
           avium 197N]
 gi|123765978|sp|Q2KWE0|MIAB_BORA1 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|115421926|emb|CAJ48446.1| putative nucleic acid binding protein [Bordetella avium 197N]
          Length = 475

 Score =  473 bits (1217), Expect = e-131,   Method: Composition-based stats.
 Identities = 192/446 (43%), Positives = 293/446 (65%), Gaps = 13/446 (2%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + +++++GCQMN YDS +M D+    QG E  ++ ++AD+I+ NTC +REKA EKV+S L
Sbjct: 28  KIYIRTFGCQMNEYDSDKMVDVLREDQGLEMTDNPEEADVILFNTCSVREKAQEKVFSDL 87

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR+++LK    K   +L++ V GCVA  EG  I++R+P V+VV GPQT +RLPEL+ R R
Sbjct: 88  GRVQHLK----KLNPNLVIGVGGCVASQEGAAIVKRAPYVDVVFGPQTLHRLPELIRRRR 143

Query: 145 -FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             G   VD  +   +KF+ +       +R  G TAF++I EGC K+C+FCVVPYTRG E+
Sbjct: 144 DEGVSQVDISFPEIEKFDNMPP-----SRVEGATAFVSIMEGCSKYCSFCVVPYTRGEEV 198

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-GLDGEKCTFSDLLYSLSEIKGLVR 262
           SR    V+ E   L D GV E+TLLGQNVNA+RG+     E   F+ LL  + EI G+ R
Sbjct: 199 SRPFEDVLTEVADLADQGVREVTLLGQNVNAYRGRIEGSDEIADFAMLLEYVHEIPGIER 258

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +RYTTSHP++M+  +++A+  L  L+ +LHLPVQ+GSDR+L +M R +TA E++ ++ ++
Sbjct: 259 IRYTTSHPKEMTQRMVEAYARLPKLVSFLHLPVQAGSDRVLAAMKRGYTALEFKSVVRKL 318

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+ RP++ +SSDFIVGFPGET++DF+ TM L+  +G+  +FSF YS R GTP +++ +  
Sbjct: 319 RAARPNLTLSSDFIVGFPGETEEDFQKTMKLIADVGFDTSFSFVYSRRPGTPAADLQDDT 378

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLN 441
            ++VK +RL  LQ  + EQ  +   + VG    +L+E    ++  +L+GR+   + V   
Sbjct: 379 PQDVKLKRLQQLQALINEQAAAIAQSMVGTRQRLLVEGPSRRDPNELMGRTENNRIVNFE 438

Query: 442 SKNHNIGDIIKVRITDVKISTLYGEL 467
             +  IG+++ V IT    ++L G +
Sbjct: 439 GPSRLIGNMVDVIITHAFTNSLRGRV 464


>gi|218234533|ref|YP_002368575.1| hypothetical protein BCB4264_A3871 [Bacillus cereus B4264]
 gi|229890421|sp|B7HDP7|MIAB_BACC4 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|218162490|gb|ACK62482.1| conserved hypothetical protein [Bacillus cereus B4264]
          Length = 509

 Score =  473 bits (1217), Expect = e-131,   Method: Composition-based stats.
 Identities = 183/450 (40%), Positives = 270/450 (60%), Gaps = 15/450 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
             ++F++++YGCQMN +D+  M  +F + GYE   S +DAD+++LNTC IRE A  KV+ 
Sbjct: 64  TGRKFYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFG 123

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELL 140
            LG +++LK    +   DLL+ V GC++Q E    +I++++  V++V G    +RLP +L
Sbjct: 124 ELGHLKSLK----RRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYIL 179

Query: 141 ERARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           + A F K  V   +S E D  E L  V     R+  + A++ I  GCDKFCT+C+VPYTR
Sbjct: 180 KDAMFSKETVVEVWSKEGDVIENLPKV-----RRGDIKAWVNIMYGCDKFCTYCIVPYTR 234

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G E SR    ++ E R L  NG  EITLLGQNVNA  GK  +  +    DL+  L ++  
Sbjct: 235 GKERSRRPEDIIQEIRHLAANGYKEITLLGQNVNA-YGKDFEDIEYGLGDLMDELRKVD- 292

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           + R+R+TTSHPRD  D LI+  G    L+ ++HLPVQSGS  +LK M R+++   Y +++
Sbjct: 293 IARIRFTTSHPRDFDDHLIEVLGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELV 352

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            +I+   PD+ +++D IVGFP ETD+ F  TM L  ++G+  AF+F YSPR GTP + M 
Sbjct: 353 RKIKEAIPDVVLTTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMK 412

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSV 438
           + V   VK ERL  L   +    +  N    GQI+EVL++   K   + L G +   + V
Sbjct: 413 DNVPMEVKKERLQRLNTLVNTLAIEKNSRYKGQIVEVLVDGESKNNPEVLAGYTRTNKLV 472

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468
              +    IG ++KV+IT+ K  +L GELV
Sbjct: 473 NFVASKSLIGQLVKVKITEAKTWSLNGELV 502


>gi|294142164|ref|YP_003558142.1| tRNA-i(6)A37 modification enzyme MiaB [Shewanella violacea DSS12]
 gi|293328633|dbj|BAJ03364.1| tRNA-i(6)A37 modification enzyme MiaB [Shewanella violacea DSS12]
          Length = 474

 Score =  473 bits (1217), Expect = e-131,   Method: Composition-based stats.
 Identities = 192/449 (42%), Positives = 287/449 (63%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++  +K++GCQMN YDS +M D+    +GY   ++ ++AD+++LNTC IREKA EKV+
Sbjct: 1   MSKKLHIKTWGCQMNEYDSSKMADLMDEYKGYTLTDNAEEADVLLLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR + LK+       +L++ V GCVA  EG+ I  R+  V+++ GPQT +RLPE+++
Sbjct: 61  HQLGRWKKLKDK----NPNLIIGVGGCVASQEGKMIKERAKCVDIIFGPQTLHRLPEMVD 116

Query: 142 RARFG-KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           + + G K V+D  +   +KF+RL        R  G TAF++I EGC K+C+FCVVPYTRG
Sbjct: 117 QVKQGGKAVIDISFPEIEKFDRLP-----EPRADGPTAFVSIMEGCSKYCSFCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR +  V+ E  +L + GV E+ LLGQNVNA+RG   D + CTF++LL  +++I G+
Sbjct: 172 EEVSRPVDDVILEVAQLAEQGVREVNLLGQNVNAFRGATHDDDICTFAELLRYIADIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+TTSHP + S  +I  + D   L+ +LHLPVQSGSD IL  M R H A EY+ II 
Sbjct: 232 DRVRFTTSHPIEFSQDIIDVYEDTPELVSFLHLPVQSGSDHILTQMKRGHMAIEYKSIIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           R+R  RPDI ISSDFI+GFPGE+  DF  TM L++ + +  +FSF YS R GTP +++ +
Sbjct: 292 RLRKARPDIQISSDFIIGFPGESKQDFADTMKLIEDVAFDHSFSFIYSARPGTPAADLPD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVV 439
            V    K ERL  LQ+++ +Q + ++   +G +  +L+E    K   +L GR+   + V 
Sbjct: 352 DVTLAEKKERLAILQERITQQAMRYSRQMLGTVQRILVEGPSVKNPMELRGRTETSRVVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
             +   +IG  + V I DV  ++L G  +
Sbjct: 412 FEADPKHIGSFVDVEIVDVYTNSLRGTFI 440


>gi|88798164|ref|ZP_01113750.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Reinekea sp. MED297]
 gi|88778940|gb|EAR10129.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Reinekea sp. MED297]
          Length = 452

 Score =  472 bits (1216), Expect = e-131,   Method: Composition-based stats.
 Identities = 193/455 (42%), Positives = 285/455 (62%), Gaps = 18/455 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++ F+K++GCQMN YDS RM D+   S GYE  ++ +DAD+I+LNTC IREKA EKV+
Sbjct: 1   MTKKLFIKTHGCQMNEYDSDRMADLLGESHGYELTDNENDADVILLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR ++LK+       +L + V GCVA  EG+ I +R+P V+++ GPQT +RLP +++
Sbjct: 61  HQLGRWKSLKDK----NPNLKIGVGGCVASQEGDAISQRAPHVDMIFGPQTLHRLPGMID 116

Query: 142 RARFGK------RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
                        VVD  +   +KF+ L        +  GV+AF+++ EGC K+CTFCVV
Sbjct: 117 ATDAAATGSDKISVVDITFPEIEKFDHLP-----APKSDGVSAFVSVMEGCSKYCTFCVV 171

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
           PYTRG E+SR    V+ E   L   GV EI  LGQNVNA+RG   DG +   ++L+   +
Sbjct: 172 PYTRGEEVSRPFDDVIAEVAHLAGQGVREINFLGQNVNAYRGARHDGGEADLAELITLAA 231

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
           +I G+ R+R+TTSHP + ++ LI  + D+  L+ +LHLPVQSGS+RIL +M R H   EY
Sbjct: 232 QIDGIDRIRFTTSHPVEFTESLIDVYNDVPELVSHLHLPVQSGSNRILAAMKRGHEVDEY 291

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
              ++RIR  RPDI+ SSDFI+GFPGETD DF  TM+L+  IG+  +FSF YS R GTP 
Sbjct: 292 IDKMERIRLNRPDISFSSDFIIGFPGETDQDFEDTMNLIQTIGFDHSFSFVYSARPGTPA 351

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPW 434
           S++ ++  E+VK +RL  LQ+++ +Q    +   VG    +L+    +   + L GR+  
Sbjct: 352 SDLPDETPESVKKQRLQILQQRITQQASQISRRMVGSTQIILVTGASERNPEDLYGRTEN 411

Query: 435 LQSVVLNSKN-HNIGDIIKVRITDVKISTLYGELV 468
            ++      +   IG  ++VRIT+   ++L GE++
Sbjct: 412 NRNTFFTCDDQSLIGKFVQVRITEAYANSLRGEII 446


>gi|226939225|ref|YP_002794296.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Laribacter
           hongkongensis HLHK9]
 gi|226714149|gb|ACO73287.1| MiaB [Laribacter hongkongensis HLHK9]
          Length = 443

 Score =  472 bits (1216), Expect = e-131,   Method: Composition-based stats.
 Identities = 199/448 (44%), Positives = 290/448 (64%), Gaps = 12/448 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ ++K++GCQMN YDS +M D+   ++   + +S DDAD+I+ NTC +REKA EKV+S 
Sbjct: 2   KKLYIKTFGCQMNEYDSDKMADVLGLAEEIVKTDSPDDADIILFNTCSVREKAQEKVFSD 61

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-ER 142
           LGR+R LK +R     DL++ V GCVA  EG+ I++R+P V+VV GPQT +RLP+L+ +R
Sbjct: 62  LGRVRPLKEAR----PDLIIGVGGCVASQEGDTIVKRAPYVDVVFGPQTLHRLPQLISQR 117

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
              G   VD  +   +KF+ L        R  G  AF+++ EGC K+CTFCVVPYTRG E
Sbjct: 118 RESGAAQVDISFPEIEKFDHLPPA-----RVEGAAAFVSVMEGCSKYCTFCVVPYTRGEE 172

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR L+ V+ E   L   GV EITLLGQNVNA+RG   DGE   F+ LL  + EI G+ R
Sbjct: 173 VSRPLNDVLTEVAGLAQQGVKEITLLGQNVNAYRGAMADGEIADFACLLECVHEIPGVER 232

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHPR+ +  +I  +  L  L+ +LHLPVQSG+DR+L +M R +TA EY+ II ++
Sbjct: 233 IRFTTSHPREFTPRIIDCYARLPKLVSHLHLPVQSGADRVLAAMKRGYTALEYKSIIRKL 292

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R++RPD+ +SSDFIVGFPGETD+DF  T  LV+++ +  +F F YSPR GTP +++ +  
Sbjct: 293 RAIRPDLCLSSDFIVGFPGETDEDFEKTRKLVEELEFDASFVFIYSPRPGTPAADLPDDT 352

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLN 441
              VK +RL  L + L  +    N + VG +  VL+E    ++  +L  RS   + V   
Sbjct: 353 PHEVKVKRLQTLTELLDRKTFEINQSMVGTVQTVLVEGISRRDSNELAARSANNRIVNFV 412

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELVV 469
            +   IG +++V IT+    ++ GE++ 
Sbjct: 413 GQPRLIGQMVEVVITEALRHSVRGEILT 440


>gi|209694559|ref|YP_002262487.1| hypothetical protein VSAL_I0996 [Aliivibrio salmonicida LFI1238]
 gi|229890434|sp|B6EIN8|MIAB_ALISL RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|208008510|emb|CAQ78681.1| conserved hypothetical protein [Aliivibrio salmonicida LFI1238]
          Length = 474

 Score =  472 bits (1216), Expect = e-131,   Method: Composition-based stats.
 Identities = 191/449 (42%), Positives = 284/449 (63%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++  +K++GCQMN YDS +M D+   + GYE      +AD+++LNTC IREKA EKV+
Sbjct: 1   MTKKLLIKTWGCQMNEYDSSKMADLLGAANGYELTEDPKEADVLLLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR ++LK+       DL++ V GCVA  EG+ I +R+P V+V+ GPQT +RLP++++
Sbjct: 61  HQLGRWKHLKDK----KPDLVIGVGGCVATQEGDHIRQRAPYVDVIFGPQTLHRLPQMIK 116

Query: 142 RARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           ++   ++ V+D  +   +KF+ L        +  GV+AF++I EGC K+CT+CVVPYTRG
Sbjct: 117 QSLSNEKTVMDISFPEIEKFDNLP-----EPKADGVSAFVSIMEGCSKYCTYCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR L  V+ E  +L + GV E+ LLGQNVNA+RG   DG+ C+F+DLL  ++ I G+
Sbjct: 172 EEVSRPLDDVLFEIAQLAEQGVREVNLLGQNVNAYRGPMYDGDICSFADLLRMVASIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            RLR+TTSHP +  D ++  + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II 
Sbjct: 232 DRLRFTTSHPLEFGDDIVAVYEDTPELVSFLHLPVQSGSDRILTMMKRPHTAIEYKSIIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R  RPDI ISSDFIV FPGE++ DF+ TM L+  + +  ++SF +SPR GTP ++   
Sbjct: 292 KLRKARPDILISSDFIVAFPGESEKDFQDTMKLIKDVDFDMSYSFVFSPRPGTPAADYPC 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439
            + E  K +RL  LQ+++  Q   F+   +   +  L+E   K    +L  R+   + V 
Sbjct: 352 DIPEQTKKDRLAELQQQISFQSARFSRQMLNTELRALVEGPSKRNPMELRARTENNRVVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG  + + IT+   ++L G LV
Sbjct: 412 FTGSPELIGQFVDLHITESFTNSLRGTLV 440


>gi|49478367|ref|YP_037833.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|52141716|ref|YP_085113.1| tRNA 2-methylthioadenine synthetase [Bacillus cereus E33L]
 gi|196038441|ref|ZP_03105750.1| conserved hypothetical protein [Bacillus cereus NVH0597-99]
 gi|81395139|sp|Q6HF43|MIAB_BACHK RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|81686624|sp|Q636Q4|MIAB_BACCZ RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|49329923|gb|AAT60569.1| conserved hypothetical protein, possible tRNA 2-methylthioadenine
           synthetase [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|51975185|gb|AAU16735.1| conserved hypothetical protein; possible tRNA 2-methylthioadenine
           synthetase [Bacillus cereus E33L]
 gi|196030849|gb|EDX69447.1| conserved hypothetical protein [Bacillus cereus NVH0597-99]
          Length = 509

 Score =  472 bits (1216), Expect = e-131,   Method: Composition-based stats.
 Identities = 183/450 (40%), Positives = 270/450 (60%), Gaps = 15/450 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
             ++F++++YGCQMN +D+  M  +F + GYE   S +DAD+++LNTC IRE A  KV+ 
Sbjct: 64  TGRKFYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFG 123

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELL 140
            LG ++ LK    +   DLL+ V GC++Q E    +I++++  V++V G    +RLP +L
Sbjct: 124 ELGHLKALK----RRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYIL 179

Query: 141 ERARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           + A F K  V   +S E D  E L  V     R+  + A++ I  GCDKFCT+C+VPYTR
Sbjct: 180 KDAMFSKETVVEVWSKEGDVIENLPKV-----RRGDIKAWVNIMYGCDKFCTYCIVPYTR 234

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G E SR    ++ E R L  NG  EITLLGQNVNA  GK  +  +    DL+  L ++  
Sbjct: 235 GKERSRRPEDIIQEIRHLAANGYKEITLLGQNVNA-YGKDFEDIEYGLGDLMDELRKVD- 292

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           + R+R+TTSHPRD  D LI+  G    L+ ++HLPVQSGS  +LK M R+++   Y +++
Sbjct: 293 IARIRFTTSHPRDFDDHLIEVLGKGGNLVEHIHLPVQSGSTEMLKIMARKYSREHYLELV 352

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            +I+   P+  +++D IVGFP ETD+ F  TM L  ++G+  AF+F YSPR GTP + M 
Sbjct: 353 RKIKEAIPNAVLTTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMK 412

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSV 438
           + V   VK ERL  L   + +  +  ND   GQI+EVL++   K   + L G +   + V
Sbjct: 413 DNVPMEVKKERLQRLNALVNKLAIEKNDRYKGQIVEVLVDGESKNNPEVLAGYTRTNKLV 472

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468
              +    IG ++KV++TD K  +L GELV
Sbjct: 473 NFVAPKSLIGQLVKVKVTDAKTWSLNGELV 502


>gi|206972613|ref|ZP_03233555.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus AH1134]
 gi|229180049|ref|ZP_04307393.1| hypothetical protein bcere0005_33950 [Bacillus cereus 172560W]
 gi|229191897|ref|ZP_04318867.1| hypothetical protein bcere0002_35540 [Bacillus cereus ATCC 10876]
 gi|206732426|gb|EDZ49606.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus AH1134]
 gi|228591448|gb|EEK49297.1| hypothetical protein bcere0002_35540 [Bacillus cereus ATCC 10876]
 gi|228603258|gb|EEK60735.1| hypothetical protein bcere0005_33950 [Bacillus cereus 172560W]
          Length = 509

 Score =  472 bits (1216), Expect = e-131,   Method: Composition-based stats.
 Identities = 183/450 (40%), Positives = 270/450 (60%), Gaps = 15/450 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
             ++F++++YGCQMN +D+  M  +F + GYE   S +DAD+++LNTC IRE A  KV+ 
Sbjct: 64  TGRKFYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFG 123

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELL 140
            LG +++LK    +   DLL+ V GC++Q E    +I++++  V++V G    +RLP +L
Sbjct: 124 ELGHLKSLK----RRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYIL 179

Query: 141 ERARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           + A F K  V   +S E D  E L  V     R+  + A++ I  GCDKFCT+C+VPYTR
Sbjct: 180 KDAMFSKETVVEVWSKEGDVIENLPKV-----RRGDIKAWVNIMYGCDKFCTYCIVPYTR 234

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G E SR    ++ E R L  NG  EITLLGQNVNA  GK  +  +    DL+  L ++  
Sbjct: 235 GKERSRRPEDIIQEIRHLAANGYKEITLLGQNVNA-YGKDFEDIEYGLGDLMDELRKVD- 292

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           + R+R+TTSHPRD  D LI+  G    L+ ++HLPVQSGS  +LK M R+++   Y +++
Sbjct: 293 IARIRFTTSHPRDFDDHLIEVLGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELV 352

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            +I+   PD+ +++D IVGFP ETD+ F  TM L  ++G+  AF+F YSPR GTP + M 
Sbjct: 353 RKIKEAIPDVVLTTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMK 412

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSV 438
           + V   VK ERL  L   +    +  N    GQI+EVL++   K   + L G +   + V
Sbjct: 413 DNVPMEVKKERLQRLNTLVNTLAIEKNSRYKGQIVEVLVDGESKNNPEVLAGYTRTNKLV 472

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468
              +    IG ++KV+IT+ K  +L GELV
Sbjct: 473 NFVASKSLIGQLVKVKITEAKTWSLNGELV 502


>gi|91792176|ref|YP_561827.1| tRNA-i(6)A37 modification enzyme MiaB [Shewanella denitrificans
           OS217]
 gi|123357083|sp|Q12R22|MIAB_SHEDO RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|91714178|gb|ABE54104.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Shewanella denitrificans
           OS217]
          Length = 474

 Score =  472 bits (1216), Expect = e-131,   Method: Composition-based stats.
 Identities = 189/449 (42%), Positives = 284/449 (63%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++  +K++GCQMN YDS +M D+    QGY   +   +AD+++LNTC IREKA EKV+
Sbjct: 1   MSKKLHIKTWGCQMNEYDSSKMADLLDEYQGYTLTDDATEADVLLLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR + LK+        L++ V GCVA  EG+ I  R+  V+++ GPQT +RLPE+++
Sbjct: 61  HQLGRWKTLKDK----KPGLIIGVGGCVASQEGKAIKDRAQCVDIIFGPQTLHRLPEMID 116

Query: 142 RARFGKRVV-DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           + + G++VV D  +   +KF+RL        R  G TAF++I EGC K+C+FCVVPYTRG
Sbjct: 117 QVQRGEKVVIDVSFPEIEKFDRLP-----EPRADGPTAFVSIMEGCSKYCSFCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR    ++ E  +L + GV E+ LLGQNVNA+RG   D + CTF++LL  ++ I G+
Sbjct: 172 EEVSRPQDDIILEIAQLAEQGVREVNLLGQNVNAYRGATHDDQICTFAELLRLVASIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+TTSHP + +  +I  + D   L+ +LHLPVQSGSDRIL  M R H A EY+ II 
Sbjct: 232 DRIRFTTSHPIEFTQDIIDVYEDTPELVSFLHLPVQSGSDRILTQMKRGHMAIEYKSIIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           R+R  R  I ISSDFI+GFPGE+ +DF  TM L++ + +  +FSF YS R GTP +++ +
Sbjct: 292 RLRKAREGIQISSDFIIGFPGESAEDFADTMKLIEDVAFDHSFSFIYSARPGTPAADLPD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVV 439
            V +  K +RL  LQ ++ +Q + ++   +G +  +L+E    K   +L GR+   + V 
Sbjct: 352 DVSDEEKKQRLAILQDRITQQAMRYSRQMLGTVQRILVEGPSVKNPMELRGRTENNRVVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
             + + +IG  + V I DV  ++L G  +
Sbjct: 412 FEAPHTHIGSFVDVEIVDVYTNSLRGIFI 440


>gi|152984799|ref|YP_001346514.1| hypothetical protein PSPA7_1128 [Pseudomonas aeruginosa PA7]
 gi|229890606|sp|A6V0C9|MIAB_PSEA7 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|150959957|gb|ABR81982.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Pseudomonas aeruginosa
           PA7]
          Length = 446

 Score =  472 bits (1215), Expect = e-131,   Method: Composition-based stats.
 Identities = 202/450 (44%), Positives = 284/450 (63%), Gaps = 13/450 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++ F++++GCQMN YDS RM D+    Q  E   +  +AD+I+LNTC IREKA EKV+
Sbjct: 1   MAKKLFIETHGCQMNEYDSSRMADLLGEHQALEVTENAAEADVILLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S LG  R+LK        DL++ V GCVA  EG  I  R+P V+VV GPQT +RLPE+++
Sbjct: 61  SKLGMWRDLKQQ----NPDLVIGVGGCVASQEGAAIRERAPYVDVVFGPQTLHRLPEMID 116

Query: 142 RARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
            AR  ++  VD  +   +KF+RL        R  G TAF+++ EGC K+C+FCVVPYTRG
Sbjct: 117 AARSTRKPQVDVSFPEIEKFDRLP-----EPRVDGPTAFVSVMEGCSKYCSFCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR    V+ E   L +NGV E+TLLGQNVN +RG+  DG    F++LL  ++ + G+
Sbjct: 172 EEVSRPFDDVIAEVIHLAENGVREVTLLGQNVNGFRGQTHDGRLADFAELLRVVAAVDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+RYTTSHP + SD LI+AH ++  L+ ++HLPVQSGSDR+L +M R HT  EY+  I 
Sbjct: 232 ERIRYTTSHPLEFSDALIQAHAEVPELVKFIHLPVQSGSDRVLAAMKRNHTVLEYKSRIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++++  PDI ISSDFIVGFPGET+ DF  TM LV+++G+  +FSF YS R GTP +++ +
Sbjct: 292 KLKAAVPDICISSDFIVGFPGETEKDFEQTMKLVEEVGFDFSFSFIYSARPGTPAADLAD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVV 439
            + E VK  RL  LQ ++ +Q    +   VG    +L+     K+ G L GR+   + V 
Sbjct: 352 DLPEEVKKRRLQILQGRIHQQGYEISRRMVGSTQRILVTDFSKKDPGMLQGRTENNRIVN 411

Query: 440 LNSKNH-NIGDIIKVRITDVKISTLYGELV 468
               N   IG   +V I D    +L G L+
Sbjct: 412 FRCDNPRLIGQFAQVHIDDALPHSLRGTLI 441


>gi|92114455|ref|YP_574383.1| tRNA-i(6)A37 modification enzyme MiaB [Chromohalobacter salexigens
           DSM 3043]
 gi|91797545|gb|ABE59684.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Chromohalobacter
           salexigens DSM 3043]
          Length = 459

 Score =  472 bits (1215), Expect = e-131,   Method: Composition-based stats.
 Identities = 202/459 (44%), Positives = 298/459 (64%), Gaps = 15/459 (3%)

Query: 15  SQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIR 73
           ++  D+  + ++ F+K++GCQMN YDS RM D+   S   E  +   DAD+I+LNTC IR
Sbjct: 4   ARRTDRIGMAKKLFIKTHGCQMNEYDSARMADLLGESHALELTDDERDADVILLNTCSIR 63

Query: 74  EKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTY 133
           EKA EKV+  LGR + LK +      DL++ V GCVA  EGE I +R+P V++V GPQT 
Sbjct: 64  EKAQEKVFHQLGRWKKLKAA----NPDLVIGVGGCVASQEGEHIKKRAPHVDMVFGPQTL 119

Query: 134 YRLPELLERARFGKRV--VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCT 191
           +RLP +L+  +  + +  VD  +   +KF+ L           G TAF+++ EGC K+CT
Sbjct: 120 HRLPTMLDSRQGAETISMVDVTFPEIEKFDHLP-----KPTSDGATAFVSVMEGCSKYCT 174

Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLL 251
           FCVVPYTRG E+SR    V++E   L D GV EI LLGQNVNA+RG+   G++   ++L+
Sbjct: 175 FCVVPYTRGEEVSRPFESVMEEVIHLADQGVREINLLGQNVNAYRGENQLGDEIDLAELI 234

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
             ++ ++G+ R+R+TTSHP + SD LI+A+G++  L+ +LHLPVQ+GSDRIL +M R HT
Sbjct: 235 GCVAAVEGIDRIRFTTSHPVEFSDSLIEAYGEIPELVSHLHLPVQAGSDRILAAMKRGHT 294

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
             EY   ++RIR++RPDI+ SSDFI+GFPGET++DF  TM+L+ +IG+  +FSF YSPR 
Sbjct: 295 VEEYVDKLERIRALRPDISFSSDFIIGFPGETEEDFMDTMNLIQRIGFDASFSFVYSPRP 354

Query: 372 GTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVG 430
           GTP +N+ ++  E  K +RL  LQ++L +Q +  +   VG    +L+     K+ G+L G
Sbjct: 355 GTPAANLEDETPEATKKQRLAILQERLNQQTMQISRRMVGNTERILVTGFSPKDPGQLSG 414

Query: 431 RSPWLQSVVLNSKN--HNIGDIIKVRITDVKISTLYGEL 467
           R+   + V   + N    IG  + V IT+   ++L G+L
Sbjct: 415 RTENNRVVNFRAPNPTELIGYFVDVEITEALPNSLRGDL 453


>gi|229047455|ref|ZP_04193047.1| hypothetical protein bcere0027_34400 [Bacillus cereus AH676]
 gi|228723899|gb|EEL75252.1| hypothetical protein bcere0027_34400 [Bacillus cereus AH676]
          Length = 509

 Score =  472 bits (1215), Expect = e-131,   Method: Composition-based stats.
 Identities = 183/450 (40%), Positives = 269/450 (59%), Gaps = 15/450 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
             ++F++++YGCQMN +D+  M  +F + GYE   S +DAD+++LNTC IRE A  KV+ 
Sbjct: 64  TGRKFYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFG 123

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELL 140
            LG +++LK    +   DLL+ V GC++Q E    +I++++  V++V G    +RLP +L
Sbjct: 124 ELGHLKSLK----RRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYIL 179

Query: 141 ERARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           + A F K  V   +S E D  E L  V     R+  + A++ I  GCDKFCT+C+VPYTR
Sbjct: 180 KDAMFSKETVVEVWSKEGDVIENLPKV-----RRGDIKAWVNIMYGCDKFCTYCIVPYTR 234

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G E SR    ++ E R L  NG  EITLLGQNVNA  GK  +  +    DL+  L ++  
Sbjct: 235 GKERSRRPEDIIQEIRHLAANGYKEITLLGQNVNA-YGKDFEDIEYGLGDLMDELRKVD- 292

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           + R+R+TTSHPRD  D LI+  G    L+ ++HLPVQSGS  +LK M R+++   Y +++
Sbjct: 293 IARIRFTTSHPRDFDDPLIEVLGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELV 352

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            +I+   PD  +++D IVGFP ETD+ F  TM L  ++G+  AF+F YSPR GTP + M 
Sbjct: 353 RKIKEAIPDAVLTTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMK 412

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSV 438
           + V   VK ERL  L   +    +  N    GQI+EVL++   K   + L G +   + V
Sbjct: 413 DNVPMEVKKERLQRLNTLVNTLAIEKNSRYKGQIVEVLVDGESKNNPEVLAGYTRTNKLV 472

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468
              +    IG ++KV+IT+ K  +L GELV
Sbjct: 473 NFVASKSLIGQLVKVKITEAKTWSLNGELV 502


>gi|30021864|ref|NP_833495.1| tRNA 2-methylthioadenosine synthase [Bacillus cereus ATCC 14579]
 gi|81432671|sp|Q812Y0|MIAB_BACCR RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|29897420|gb|AAP10696.1| tRNA 2-methylthioadenosine synthase [Bacillus cereus ATCC 14579]
          Length = 509

 Score =  472 bits (1215), Expect = e-131,   Method: Composition-based stats.
 Identities = 182/450 (40%), Positives = 268/450 (59%), Gaps = 15/450 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
             ++F++++YGCQMN +D+  M  +F + GYE   S +DAD+++LNTC IRE A  KV+ 
Sbjct: 64  TGRKFYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFG 123

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELL 140
            LG +++LK    +   D L+ V GC++Q E    +I++++  V++V G    +RLP +L
Sbjct: 124 ELGHLKSLK----RRNPDFLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYIL 179

Query: 141 ERARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           + A F K  V   +S E D  E L  V     R+  + A++ I  GCDKFCT+C+VPYTR
Sbjct: 180 KDAMFSKETVVEVWSKEGDVIENLPKV-----RRGDIKAWVNIMYGCDKFCTYCIVPYTR 234

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G E SR    ++ E R L  NG  EITLLGQNVNA  GK  +  +    DL+  L ++  
Sbjct: 235 GKERSRRPEDIIQEIRHLAANGYKEITLLGQNVNA-YGKDFEDIEYGLGDLMDELRKVD- 292

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           + R+R+TTSHPRD  D LI+  G    L+ ++HLPVQSGS  +LK M R+++   Y +++
Sbjct: 293 IARIRFTTSHPRDFDDHLIEVLGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELV 352

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            +I+   PD  +++D IVGFP ETD+ F  TM L  ++G+  AF+F YSPR GTP + M 
Sbjct: 353 RKIKEAIPDAVLTTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMK 412

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSV 438
           + V   VK ERL  L   +    +  N    GQI+EVL++   K   + L G +   + V
Sbjct: 413 DNVPMEVKKERLQRLNTLVNTLAIEKNSRYKGQIVEVLVDGESKNNPEVLAGYTRTNKLV 472

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468
              +    IG ++KV+IT+ K  +L GELV
Sbjct: 473 NFVASKSLIGQLVKVKITEAKTWSLNGELV 502


>gi|206977875|ref|ZP_03238763.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus H3081.97]
 gi|217961193|ref|YP_002339761.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus AH187]
 gi|222097218|ref|YP_002531275.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
           cereus Q1]
 gi|229140413|ref|ZP_04268968.1| hypothetical protein bcere0013_35120 [Bacillus cereus BDRD-ST26]
 gi|229197883|ref|ZP_04324599.1| hypothetical protein bcere0001_34190 [Bacillus cereus m1293]
 gi|229890422|sp|B7HLA6|MIAB_BACC7 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|206743875|gb|EDZ55294.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus H3081.97]
 gi|217064945|gb|ACJ79195.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus AH187]
 gi|221241276|gb|ACM13986.1| conserved hypothetical protein [Bacillus cereus Q1]
 gi|228585601|gb|EEK43703.1| hypothetical protein bcere0001_34190 [Bacillus cereus m1293]
 gi|228642974|gb|EEK99250.1| hypothetical protein bcere0013_35120 [Bacillus cereus BDRD-ST26]
 gi|324327666|gb|ADY22926.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
           thuringiensis serovar finitimus YBT-020]
          Length = 509

 Score =  472 bits (1215), Expect = e-131,   Method: Composition-based stats.
 Identities = 181/450 (40%), Positives = 270/450 (60%), Gaps = 15/450 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
             ++F++++YGCQMN +D+  M  +F + GYE   S ++AD+++LNTC IRE A  KV+ 
Sbjct: 64  TGRKFYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEEADVVLLNTCAIRENAENKVFG 123

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELL 140
            LG ++ LK    +   DLL+ V GC++Q E    +I++++  V++V G    +RLP +L
Sbjct: 124 ELGHLKALK----RRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYIL 179

Query: 141 ERARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           + A F K  V   +S E D  E L  V     R+  + A++ I  GCDKFCT+C+VPYTR
Sbjct: 180 KDAMFSKETVVEVWSKEGDVIENLPKV-----RRGDIKAWVNIMYGCDKFCTYCIVPYTR 234

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G E SR    ++ E R L  NG  EITLLGQNVNA  GK  +  +    DL+  L ++  
Sbjct: 235 GKERSRRPEDIIQEIRHLAANGYKEITLLGQNVNA-YGKDFEDIEYGLGDLMDELRKVD- 292

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           + R+R+TTSHPRD  D LI+  G    L+ ++HLPVQSGS  +LK M R+++   Y +++
Sbjct: 293 IARIRFTTSHPRDFDDHLIEVLGKGGNLVEHIHLPVQSGSTEMLKIMARKYSREHYLELV 352

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            +I+   P+  +++D IVGFP ETD+ F  TM L  ++G+  AF+F YSPR GTP + M 
Sbjct: 353 RKIKEAIPNAVLTTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMK 412

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSV 438
           + V   VK ERL  L   + +  +  N+   GQI+EVL++   K   + L G +   + V
Sbjct: 413 DNVPMEVKKERLQRLNALVNKLAIEKNNRYKGQIVEVLVDGESKNNPEVLAGYTRTNKLV 472

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468
              +    IG ++KV++TD K  +L GELV
Sbjct: 473 NFVAPKSLIGQLVKVKVTDAKTWSLNGELV 502


>gi|194097636|ref|YP_002000671.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Neisseria
           gonorrhoeae NCCP11945]
 gi|239998169|ref|ZP_04718093.1| Bifunctional enzyme involved in thiolation and methylation of tRNA
           [Neisseria gonorrhoeae 35/02]
 gi|240079933|ref|ZP_04724476.1| Bifunctional enzyme involved in thiolation and methylation of tRNA
           [Neisseria gonorrhoeae FA19]
 gi|240114885|ref|ZP_04728947.1| Bifunctional enzyme involved in thiolation and methylation of tRNA
           [Neisseria gonorrhoeae PID18]
 gi|240122726|ref|ZP_04735682.1| Bifunctional enzyme involved in thiolation and methylation of tRNA
           [Neisseria gonorrhoeae PID332]
 gi|240124916|ref|ZP_04737802.1| Bifunctional enzyme involved in thiolation and methylation of tRNA
           [Neisseria gonorrhoeae SK-92-679]
 gi|240127427|ref|ZP_04740088.1| Bifunctional enzyme involved in thiolation and methylation of tRNA
           [Neisseria gonorrhoeae SK-93-1035]
 gi|254492946|ref|ZP_05106117.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
 gi|260441300|ref|ZP_05795116.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Neisseria
           gonorrhoeae DGI2]
 gi|268594020|ref|ZP_06128187.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
 gi|268596073|ref|ZP_06130240.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
 gi|268600543|ref|ZP_06134710.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18]
 gi|268681325|ref|ZP_06148187.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332]
 gi|268683496|ref|ZP_06150358.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
 gi|268685802|ref|ZP_06152664.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035]
 gi|291044655|ref|ZP_06570364.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
 gi|293397764|ref|ZP_06641970.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Neisseria gonorrhoeae
           F62]
 gi|229890573|sp|B4RNW8|MIAB_NEIG2 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|193932926|gb|ACF28750.1| Bifunctional enzyme involved in thiolation and methylation of tRNA
           [Neisseria gonorrhoeae NCCP11945]
 gi|226511986|gb|EEH61331.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
 gi|268547409|gb|EEZ42827.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
 gi|268549861|gb|EEZ44880.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
 gi|268584674|gb|EEZ49350.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18]
 gi|268621609|gb|EEZ54009.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332]
 gi|268623780|gb|EEZ56180.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
 gi|268626086|gb|EEZ58486.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035]
 gi|291011549|gb|EFE03545.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
 gi|291611710|gb|EFF40779.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Neisseria gonorrhoeae
           F62]
 gi|317163459|gb|ADV07000.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Neisseria
           gonorrhoeae TCDC-NG08107]
          Length = 442

 Score =  472 bits (1215), Expect = e-131,   Method: Composition-based stats.
 Identities = 195/448 (43%), Positives = 281/448 (62%), Gaps = 13/448 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQ--GYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           ++ F++++GCQMN YDS +M  +   +  G E+V   D+AD+I+ NTC +REKA EKV+S
Sbjct: 2   KKVFIRTFGCQMNEYDSEKMLSVLAEEHGGIEQVTQADEADIILFNTCSVREKAQEKVFS 61

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-E 141
            LGR+R LK         L++ VAGCVA  EGE I++R+P V+VV GPQT +RLP+++ +
Sbjct: 62  DLGRVRPLKEK----NPGLIIGVAGCVASQEGENIIKRAPYVDVVFGPQTLHRLPKMIVD 117

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           +   G   VD  +   +KF+ L        R  G  AF++I EGC K+C+FCVVPYTRG 
Sbjct: 118 KETSGLSQVDISFPEIEKFDHLPPA-----RVEGGAAFVSIMEGCSKYCSFCVVPYTRGE 172

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR L+ V+ E   L   GV EI LLGQNVNA+RG+  DGE C F+ LL  + EI G+ 
Sbjct: 173 EFSRPLNDVLTEIANLAQQGVKEINLLGQNVNAYRGEMDDGEICDFATLLRIVHEIPGIE 232

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHPR+ +D +I+ + DL  L+ +LHLP+QSGSDR+L +M R +TA EY+ II +
Sbjct: 233 RMRFTTSHPREFTDSIIECYRDLPKLVSHLHLPIQSGSDRVLSAMKRGYTALEYKSIIRK 292

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R++RPD+ +SSDFIVGFPGET+ +F  T+ LV  I +  +F F YSPR GTP +N+ + 
Sbjct: 293 LRAIRPDLCLSSDFIVGFPGETEREFEQTLKLVKDIAFDLSFVFIYSPRPGTPAANLPDD 352

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVL 440
                K  RL  L + +  +    N   +G +   L+E    K+  +L  R+   + V  
Sbjct: 353 TPHEEKVRRLEALNEVIEAETARINQTMIGTVQRCLVEGISKKDPDQLQARTANNRVVNF 412

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 I  +I + IT+    +L G++V
Sbjct: 413 TGTPDMINQMIDLEITEAYTFSLRGKIV 440


>gi|229071269|ref|ZP_04204493.1| hypothetical protein bcere0025_34430 [Bacillus cereus F65185]
 gi|229081024|ref|ZP_04213537.1| hypothetical protein bcere0023_36650 [Bacillus cereus Rock4-2]
 gi|228702338|gb|EEL54811.1| hypothetical protein bcere0023_36650 [Bacillus cereus Rock4-2]
 gi|228711890|gb|EEL63841.1| hypothetical protein bcere0025_34430 [Bacillus cereus F65185]
          Length = 509

 Score =  472 bits (1215), Expect = e-131,   Method: Composition-based stats.
 Identities = 183/450 (40%), Positives = 270/450 (60%), Gaps = 15/450 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
             ++F++++YGCQMN +D+  M  +F + GYE   S +DAD+++LNTC IRE A  KV+ 
Sbjct: 64  TGRKFYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFG 123

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELL 140
            LG +++LK    +   DLL+ V GC++Q E    +I++++  V++V G    +RLP +L
Sbjct: 124 ELGHLKSLK----RRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYIL 179

Query: 141 ERARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           + A F K  V   +S E D  E L  V     R+  + A++ I  GCDKFCT+C+VPYTR
Sbjct: 180 KDAMFSKETVVEVWSKEGDVIENLPKV-----RRGDIKAWVNIMYGCDKFCTYCIVPYTR 234

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G E SR    ++ E R L  NG  EITLLGQNVNA  GK  +  +    DL+  L ++  
Sbjct: 235 GKERSRRPEDIIQEIRHLAANGYKEITLLGQNVNA-YGKDFEDIEYGLGDLMDELRKVD- 292

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           + R+R+TTSHPRD  D LI+  G    L+ ++HLPVQSGS  +LK M R+++   Y +++
Sbjct: 293 IARIRFTTSHPRDFDDHLIEVLGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELV 352

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            +I+   PD+ +++D IVGFP ETD+ F  TM L  ++G+  AF+F YSPR GTP + M 
Sbjct: 353 RKIKEAIPDVVLTTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMK 412

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSV 438
           + V   VK ERL  L   +    +  N    GQI+EVL++   K   + L G +   + V
Sbjct: 413 DNVPMQVKKERLQRLNTLVNTLAIEKNSRYKGQIVEVLVDGESKNNPEVLAGYTRTNKLV 472

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468
              +    IG ++KV+IT+ K  +L GELV
Sbjct: 473 NFVASKSLIGQLVKVKITEAKTWSLNGELV 502


>gi|332678361|gb|AEE87490.1| tRNA-i(6)A37 methylthiotransferase [Francisella cf. novicida Fx1]
          Length = 442

 Score =  472 bits (1215), Expect = e-131,   Method: Composition-based stats.
 Identities = 190/447 (42%), Positives = 276/447 (61%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYER-VNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ F+K+ GCQMN YDS RM ++          +   DAD+I++NTC IREKA EKV+  
Sbjct: 5   KKVFIKTLGCQMNEYDSARMHEVLNEHFDTVKTDDYKDADIILINTCSIREKAQEKVFHE 64

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK    K   DL++ V GCVA  EGE I++R+P V++V GPQT +RLPE++ + 
Sbjct: 65  LGRWKGLK----KTNEDLIIGVGGCVASQEGENIIKRAPFVDLVFGPQTIHRLPEMIRQK 120

Query: 144 RFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           +  ++  VD  +   +KF+ L        +  G  A+++I EGCDK+C++CVVPYTRG E
Sbjct: 121 QKTQQSQVDISFPEVEKFDYLP-----EPKAEGAKAYVSIMEGCDKYCSYCVVPYTRGPE 175

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           ++R    V+ E   L + GV EITLLGQNVN + G   +G+    + L++ ++EI G+ R
Sbjct: 176 VNRPFEDVLAECAILAEQGVKEITLLGQNVNHYLGPMENGQTADLALLIHFIAEIDGIER 235

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP + S  LI A+  +  L  +LHLPVQ GSDRIL +M R HT  E++Q I ++
Sbjct: 236 IRFTTSHPVEFSQNLIDAYATVPELANHLHLPVQHGSDRILINMKRNHTILEFKQKIRKL 295

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R++RPDI ISSDFIVGFPGET++DF+  +DLV +I + Q+FSF YS R GTP +++ +  
Sbjct: 296 RAIRPDITISSDFIVGFPGETEEDFQKLLDLVKEINFDQSFSFIYSKRPGTPAADLPDDT 355

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLN 441
              VK +RL  LQ  L       +   VG    +L++    K+   L GR+   + V   
Sbjct: 356 PMEVKKDRLKRLQDLLNSNAQIISRQMVGTNQRILVDGTSKKDDNILSGRTENNRVVNFK 415

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                IG    V+IT+   ++L GEL+
Sbjct: 416 GDKSLIGQFAMVKITESLPNSLRGELI 442


>gi|47568277|ref|ZP_00238980.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus G9241]
 gi|47555105|gb|EAL13453.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus G9241]
          Length = 509

 Score =  472 bits (1215), Expect = e-131,   Method: Composition-based stats.
 Identities = 182/450 (40%), Positives = 271/450 (60%), Gaps = 15/450 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
             ++F++++YGCQMN +D+  M  +F + GYE   S +DAD+++LNTC IRE A  KV+ 
Sbjct: 64  TGRKFYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFG 123

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELL 140
            LG +++LK    +   DLL+ V GC++Q E    +I++++  V++V G    +RLP +L
Sbjct: 124 ELGHLKSLK----RRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYIL 179

Query: 141 ERARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           + A F K  V   +S E D  E L  V     R+  + A++ I  GCDKFCT+C+VPYTR
Sbjct: 180 KDAMFSKETVVEVWSKEGDVIENLPKV-----RRGDIKAWVNIMYGCDKFCTYCIVPYTR 234

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G E SR    ++ E R L  NG  EITLLGQNVNA  GK  +  +    DL+  L ++  
Sbjct: 235 GKERSRRPEDIIQEIRHLAANGYKEITLLGQNVNA-YGKDFEDIEYGLGDLMDELRKVD- 292

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           + R+R+TTSHPRD  D LI+  G    L+ ++HLPVQSGS  +LK M R+++   Y +++
Sbjct: 293 IARIRFTTSHPRDFDDHLIEVLGKGGNLVEHIHLPVQSGSTEMLKIMARKYSREHYLELV 352

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            +I+   P+  +++D IVGFP ETD+ F  TM L  ++G+  AF+F YSPR GTP + M 
Sbjct: 353 RKIKEAIPNAVLTTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMK 412

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSV 438
           + V   VK +RL  L   + +  +  ND   GQI+EVL++   K   + L G +   + V
Sbjct: 413 DNVPMEVKKKRLQRLNALVNKLAIEKNDRYKGQIVEVLVDGESKNNPEVLAGYTRTNKLV 472

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468
              +    IG ++KV++TD K  +L GELV
Sbjct: 473 NFVAPKSLIGQLVKVKVTDAKTWSLNGELV 502


>gi|50120258|ref|YP_049425.1| hypothetical protein ECA1319 [Pectobacterium atrosepticum SCRI1043]
 gi|81645754|sp|Q6D7K6|MIAB_ERWCT RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|49610784|emb|CAG74229.1| conserved hypothetical protein [Pectobacterium atrosepticum
           SCRI1043]
          Length = 474

 Score =  472 bits (1214), Expect = e-131,   Method: Composition-based stats.
 Identities = 196/449 (43%), Positives = 285/449 (63%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++  +K++GCQMN YDS +M D+  S  GYE     ++AD+++LNTC IREKA EKV+
Sbjct: 1   MTKKLHIKTWGCQMNEYDSSKMADLLGSTHGYELTEIAEEADVLLLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR + LK+       +L++ V GCVA  EG  I  R+  V+V+ GPQT +RLPE++ 
Sbjct: 61  HQLGRWKALKD----LNPNLIIGVGGCVASQEGAHIRERAHYVDVIFGPQTLHRLPEMIN 116

Query: 142 RARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
             +  +  +VD  +   +KF+RL        R  G TAF++I EGC+K+CTFCVVPYTRG
Sbjct: 117 HVQGTRSPIVDISFPEIEKFDRLP-----EPRADGPTAFVSIMEGCNKYCTFCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR    V+ E  +L   GV E+ LLGQNVNA+RG+  DGE C+F++LL  ++ I G+
Sbjct: 172 EEVSRPCDDVLFEIAQLAAQGVREVNLLGQNVNAYRGETYDGEICSFAELLRLVAAIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+TTSHP + +D +I  + D   L+ +LHLPVQSGSDR+L  M RRHTA EY+ II 
Sbjct: 232 DRVRFTTSHPIEFTDDIISVYEDTPELVSFLHLPVQSGSDRVLTMMKRRHTALEYKAIIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++ + RP I ISSDFI+GFPGET  DF  TM L+  + +  ++SF YS R GTP ++M++
Sbjct: 292 KLHNARPGILISSDFIIGFPGETQADFEQTMKLIADVNFDMSYSFVYSARPGTPAADMVD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439
            V E  K +RL  LQ ++ +Q + F+   +G +  +L+E   ++   +L GR+   + V 
Sbjct: 352 DVLEEEKKQRLYLLQDRITKQAMRFSRLMLGTVQRILVEGTSRKSVMELSGRTENNRVVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG  + V I DV  ++L G +V
Sbjct: 412 FEGTPDMIGKFVDVEIVDVYTNSLRGIVV 440


>gi|300705107|ref|YP_003746710.1| isopentenyl-adenosine a37 tRNA methylthiolase, Fe-S protein
           [Ralstonia solanacearum CFBP2957]
 gi|299072771|emb|CBJ44126.1| isopentenyl-adenosine A37 tRNA methylthiolase, Fe-S protein
           [Ralstonia solanacearum CFBP2957]
          Length = 460

 Score =  472 bits (1214), Expect = e-131,   Method: Composition-based stats.
 Identities = 202/454 (44%), Positives = 287/454 (63%), Gaps = 20/454 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ F+K++GCQMN YDS +M D+   ++G    ++ +DAD+I+ NTC +REKA EKV+S 
Sbjct: 2   KKVFIKTFGCQMNEYDSDKMADVLNAAEGLVPTDTPEDADVILFNTCSVREKAQEKVFSD 61

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE-R 142
           LGR++ LK        DL+V V GCVA  EG  I+ R+P V+VV GPQT +RLPEL++ R
Sbjct: 62  LGRVKALKA----LNPDLVVGVGGCVASQEGASIVARAPYVDVVFGPQTLHRLPELIDAR 117

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            R G+  VD  +   +KF+ L        R  G +AF++I EGC K+C++CVVPYTRG E
Sbjct: 118 RRTGRPQVDVSFPEIEKFDHLPPA-----RVEGPSAFVSIMEGCSKYCSYCVVPYTRGEE 172

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG-EKCTFSDLLYSLSEIKGLV 261
           +SR    V+ E   L + GV E+TLLGQNVNA+ GK  +  E+  F+ LL  ++EI G+ 
Sbjct: 173 VSRPFEDVLAEVAGLAEQGVREVTLLGQNVNAYVGKMGNTSERADFALLLEYVAEIPGIE 232

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+RYTTSHP++ +  LI+A+     L+ +LHLPVQ GSDRIL +M R +T  EY+ II +
Sbjct: 233 RIRYTTSHPKEFTSRLIEAYATNRKLVDHLHLPVQHGSDRILMAMKRGYTVLEYKSIIRK 292

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R++RPDI+I++D IVGFPGETD DF  TMDLV +IGY  +FSF YSPR GTP +N+ + 
Sbjct: 293 LRTIRPDISIATDIIVGFPGETDADFAKTMDLVHEIGYDNSFSFIYSPRPGTPAANLHDD 352

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVL 440
               VK ERL  LQ  +       ++  VG +  +L+E    K+  +L GR+   + V  
Sbjct: 353 TPHAVKLERLKHLQATIDANMARISEGMVGSVQRILVEGPSRKDPSELHGRTENNRVVNF 412

Query: 441 NSKNH-------NIGDIIKVRITDVKISTLYGEL 467
              +         +G ++ VRI      +L GE+
Sbjct: 413 ALPDLPPARRDQLVGQMLDVRIVHAYPHSLRGEV 446


>gi|42782856|ref|NP_980103.1| hypothetical protein BCE_3806 [Bacillus cereus ATCC 10987]
 gi|81409496|sp|Q732V4|MIAB_BACC1 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|42738783|gb|AAS42711.1| conserved hypothetical protein [Bacillus cereus ATCC 10987]
          Length = 509

 Score =  472 bits (1214), Expect = e-131,   Method: Composition-based stats.
 Identities = 181/450 (40%), Positives = 270/450 (60%), Gaps = 15/450 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
             ++F++++YGCQMN +D+  M  +F + GYE   S ++AD+++LNTC IRE A  KV+ 
Sbjct: 64  TGRKFYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEEADVVLLNTCAIRENAENKVFG 123

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELL 140
            LG ++ LK    +   DLL+ V GC++Q E    +I++++  V++V G    +RLP +L
Sbjct: 124 ELGHLKALK----RRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYIL 179

Query: 141 ERARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           + A F K  V   +S E D  E L  V     R+  + A++ I  GCDKFCT+C+VPYTR
Sbjct: 180 KDAMFSKETVVEVWSKEGDVIENLPKV-----RRGDIKAWVNIMYGCDKFCTYCIVPYTR 234

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G E SR    ++ E R L  NG  EITLLGQNVNA  GK  +  +    DL+  L ++  
Sbjct: 235 GKERSRRPEDIIQEIRHLAANGYKEITLLGQNVNA-YGKDFEDIEYGLGDLMDELRKVD- 292

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           + R+R+TTSHPRD  D LI+  G    L+ ++HLPVQSGS  +LK M R+++   Y +++
Sbjct: 293 IARIRFTTSHPRDFDDHLIEVLGKGGNLVEHIHLPVQSGSTEMLKIMARKYSREHYLELV 352

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            +I+   P+  +++D IVGFP ETD+ F  TM L  ++G+  AF+F YSPR GTP + M 
Sbjct: 353 RKIKEAIPNAVLTTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMK 412

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSV 438
           + V   VK ERL  L   + +  +  N+   GQI+EVL++   K   + L G +   + V
Sbjct: 413 DNVPMEVKKERLQRLNALVNKLAIEKNNRYKGQIVEVLVDGESKNNPEVLAGYTRTNKLV 472

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468
              +    IG ++KV++TD K  +L GELV
Sbjct: 473 NFVAPKSLIGQLVKVKVTDAKTWSLNGELV 502


>gi|289209299|ref|YP_003461365.1| RNA modification enzyme, MiaB family [Thioalkalivibrio sp. K90mix]
 gi|288944930|gb|ADC72629.1| RNA modification enzyme, MiaB family [Thioalkalivibrio sp. K90mix]
          Length = 450

 Score =  472 bits (1214), Expect = e-131,   Method: Composition-based stats.
 Identities = 197/449 (43%), Positives = 276/449 (61%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++ +++++GCQMN YDS RM D      G ER +  + AD++++NTC IREKA EKV+
Sbjct: 1   MIRKVYIQTHGCQMNEYDSDRMLDALRELHGAERTDDPEQADVLLMNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S LGR R +K  R     ++++ V GCVA  EG+ +  R+P V++V GPQT +RLP +++
Sbjct: 61  SLLGRWRQIKERR----PEVIIGVGGCVASQEGDALRERAPYVDLVFGPQTLHRLPAMIQ 116

Query: 142 RARFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
             R  +  VVD  +   +KF+RL        +  G TAF+++ EGC K+C+FCVVPYTRG
Sbjct: 117 SVRRERAPVVDISFPEIEKFDRLP-----EPKADGPTAFVSVMEGCSKYCSFCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            EISR    V+ E   L   GV EI LLGQNVNA+RG   DG+    + L++ ++ + G+
Sbjct: 172 DEISRPFDDVIAEVVALAGQGVKEINLLGQNVNAYRGPMEDGDTADLALLIHYVAAVDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+TTSHP + SD LI+A+ D   L+ +LHLPVQSGSDRIL  M R HT  EY+  I 
Sbjct: 232 ERIRFTTSHPVEFSDSLIQAYADEPKLVGHLHLPVQSGSDRILAQMKRGHTILEYKSKIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           R+R  RPD+ +SSDFIVGFPGETD D  ATM L++++ +  +FSF YS R GTP +++ +
Sbjct: 292 RLREARPDLDLSSDFIVGFPGETDADHAATMKLIEELHFDFSFSFIYSARPGTPAASLPD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439
            V    K  RL  LQ  + +     N A VG I  VL+E   K   G+L  R+   + V 
Sbjct: 352 DVPLATKKARLAELQALIEQHGRERNQAMVGNIEPVLVEGPAKRNPGELAARTANNRIVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG +I V IT+    +L G  V
Sbjct: 412 FAGDPSLIGQMIPVEITEALAHSLRGRAV 440


>gi|332763335|gb|EGJ93575.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Shigella flexneri K-671]
          Length = 461

 Score =  472 bits (1214), Expect = e-131,   Method: Composition-based stats.
 Identities = 193/436 (44%), Positives = 281/436 (64%), Gaps = 12/436 (2%)

Query: 36  MNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSR 94
           MN YDS +M D+  +  GY+  +  ++AD+++LNTC IREKA EKV+  LGR + LK   
Sbjct: 1   MNEYDSSKMADLLDATHGYQLTDVAEEADVLLLNTCSIREKAQEKVFHQLGRWKLLKEK- 59

Query: 95  IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR-VVDTD 153
                DL++ V GCVA  EGE I +R+  V+++ GPQT +RLPE++   R  +  VVD  
Sbjct: 60  ---NPDLIIGVGGCVASQEGEHIRQRAHYVDIIFGPQTLHRLPEMINSVRGDRSPVVDIS 116

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           +   +KF+RL        R  G TAF++I EGC+K+CT+CVVPYTRG E+SR    ++ E
Sbjct: 117 FPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTYCVVPYTRGEEVSRPSDDILFE 171

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
             +L   GV E+ LLGQNVNAWRG+  DG   +F+DLL  ++ I G+ R+R+TTSHP + 
Sbjct: 172 IAQLAAQGVREVNLLGQNVNAWRGENYDGTTGSFADLLRLVAAIDGIDRIRFTTSHPIEF 231

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
           +D +I+ + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II ++R+ RPDI ISS
Sbjct: 232 TDDIIEVYRDTPELVSFLHLPVQSGSDRILNLMGRTHTALEYKAIIRKLRAARPDIQISS 291

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLC 393
           DFIVGFPGET +DF  TM L+  + +  ++SF +S R GTP ++M++ V E  K +RL  
Sbjct: 292 DFIVGFPGETTEDFEKTMKLIADVNFDMSYSFIFSARPGTPAADMVDDVPEEEKKQRLYI 351

Query: 394 LQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNSKNHNIGDIIK 452
           LQ+++ +Q ++++   +G    +L+E   ++   +L GR+   + V        IG  + 
Sbjct: 352 LQERINQQAMAWSRRMLGTTQRILVEGTSRKSIMELSGRTENNRVVNFEGTPDMIGKFVD 411

Query: 453 VRITDVKISTLYGELV 468
           V ITDV  ++L G++V
Sbjct: 412 VEITDVYPNSLRGKVV 427


>gi|294669853|ref|ZP_06734912.1| hypothetical protein NEIELOOT_01746 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291308246|gb|EFE49489.1| hypothetical protein NEIELOOT_01746 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 440

 Score =  472 bits (1214), Expect = e-131,   Method: Composition-based stats.
 Identities = 198/448 (44%), Positives = 283/448 (63%), Gaps = 13/448 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQ--GYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           ++ F++++GCQMN YDS +M  +   +  G E+V   D+AD+I+ NTC +REKA EKV+S
Sbjct: 2   KKVFIRTFGCQMNEYDSEKMLSVLEEEHGGIEQVAEPDEADIILFNTCSVREKAQEKVFS 61

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE- 141
            LGR+R LK+       DL++ VAGCVA  EGE I++R+P V++V GPQT +RLP L++ 
Sbjct: 62  DLGRVRPLKDK----KPDLIIGVAGCVASQEGEAIVKRAPFVDIVFGPQTLHRLPRLIDD 117

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           +   G   VD  +   +KF+ L        R  G +AF++I EGC K+C+FCVVPYTRG 
Sbjct: 118 KKETGLPQVDISFPEIEKFDHLPPA-----RVDGGSAFISIMEGCSKYCSFCVVPYTRGE 172

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR L+ V+ E   L   GV EI LLGQNVNA+RG   DGE C F+ LL  + EI G+ 
Sbjct: 173 EFSRPLNDVLTEIAGLAQQGVKEINLLGQNVNAYRGLMDDGEVCDFATLLRIVHEIPGIE 232

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHPR+ SD +I+ + DL  L+ +LHLP+QSGSDR+L +M R +TA EY+ II +
Sbjct: 233 RIRFTTSHPREFSDAIIECYRDLPKLVSHLHLPIQSGSDRVLSAMKRGYTALEYKSIIRK 292

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R++RPD+ +SSDFIVGFPGET+ +F  T+ LV  I +  +F F YSPR GTP +N+ + 
Sbjct: 293 LRAIRPDLCLSSDFIVGFPGETEREFEQTLKLVKDIAFDLSFVFIYSPRPGTPAANLHDD 352

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVL 440
                K  RL  L + +  +    N   VG +   L+E    K+  +L  R+   + V  
Sbjct: 353 TPHEEKVRRLEALNEVIEAETARINQTMVGTVQRCLVEGVSKKDPEQLQARTANNRVVNF 412

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 I  +++++IT     +L GEL+
Sbjct: 413 VGNPELINQMVEIKITGAFTFSLRGELL 440


>gi|302389750|ref|YP_003825571.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Thermosediminibacter
           oceani DSM 16646]
 gi|302200378|gb|ADL07948.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Thermosediminibacter
           oceani DSM 16646]
          Length = 439

 Score =  472 bits (1214), Expect = e-131,   Method: Composition-based stats.
 Identities = 178/446 (39%), Positives = 266/446 (59%), Gaps = 13/446 (2%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           ++ + ++GCQMN++D+  +  +    GY    ++ +ADLI+LNTC +RE A  KVY  +G
Sbjct: 3   KYHILTWGCQMNLHDTEVISGVLQKMGYCPAGNLKEADLIILNTCCVRENAERKVYGRIG 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +++  K        +L++ + GC+ Q     E I    P V+++ G    ++LP+L+E A
Sbjct: 63  QLKQFKQR----NPNLVLGICGCMIQQPHVVEYITEHFPYVDLIFGIHNVHKLPQLIENA 118

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           R     V        + E     D    R+  + A++TI  GC+ FCT+C+VPY RG E 
Sbjct: 119 RLANMTVIETGGESSQIEE----DLPVEREDKIKAWVTITYGCNNFCTYCIVPYVRGREK 174

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR+   +V E  +L   G  EI LLGQNVN+  GK L G   TF +LL  L++I G+ R+
Sbjct: 175 SRNPEDIVREVEELAKQGFKEINLLGQNVNS-YGKDLGGA-VTFPELLRRLNDIDGIERI 232

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+TTSHP+D+SD LI A  D   +  ++HLPVQ+GS+RIL++MNRR+T   Y +++ ++R
Sbjct: 233 RFTTSHPKDLSDELIYAMRDCKKVCEHIHLPVQAGSNRILEAMNRRYTREHYMELVKKLR 292

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
               DIAIS+D IVGFPGET++DF+ T+DLV ++ Y QAF F YS R GTP + M  QVD
Sbjct: 293 DAISDIAISTDIIVGFPGETEEDFQDTLDLVRRVEYDQAFMFVYSKRKGTPAAEMENQVD 352

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVLNS 442
           E+VK ERL  L +         N A  GQ++EVL+E   +   + L GR+   + V    
Sbjct: 353 EDVKKERLDRLMRLQDSISAKKNKALKGQVVEVLVEGPSRNNPEKLTGRTRTNKVVNFEG 412

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
               IG +++VRIT+    +L GE++
Sbjct: 413 PADLIGKLVEVRITEPHTWSLIGEVL 438


>gi|332526540|ref|ZP_08402652.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Rubrivivax
           benzoatilyticus JA2]
 gi|332110808|gb|EGJ10985.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Rubrivivax
           benzoatilyticus JA2]
          Length = 444

 Score =  471 bits (1213), Expect = e-131,   Method: Composition-based stats.
 Identities = 192/452 (42%), Positives = 280/452 (61%), Gaps = 18/452 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQG-YERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ +++++GCQMN YDS +M D+  + G YE  +  + ADL++ NTC +REKA EKV+S 
Sbjct: 2   KKVYIRTFGCQMNEYDSAKMADVLNAAGGYEPTDDPEQADLVLFNTCSVREKAQEKVFSD 61

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR+++LK         +L+ V GCVA  EG  I+ R+P V++V GPQT +RLP+++   
Sbjct: 62  LGRVKHLKKK------GVLIGVGGCVASQEGAAIIERAPYVDMVFGPQTLHRLPQMIAAR 115

Query: 144 RFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
              +R  VD  +   +KF+ L        R  G +AF++I EGC K+CT+CVVPYTRG E
Sbjct: 116 SNERRPQVDISFPEIEKFDHLPP-----PRIEGASAFVSIMEGCSKYCTYCVVPYTRGEE 170

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG-KGLDGEKCTFSDLLYSLSEIKGLV 261
           +SR    V+ E   L D GV E+TLLGQNVNA+RG  G  GE    + LL  ++E+ G+ 
Sbjct: 171 VSRPFEDVLTEVADLADRGVKEVTLLGQNVNAYRGAMGESGEIADLALLLEYVAEVPGIE 230

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHP + +  LI+A+G +  L+ +LHLPVQ GSDRIL +M R +TA EY+  I +
Sbjct: 231 RIRFTTSHPNEFTQRLIEAYGRIPKLVSHLHLPVQHGSDRILSAMKRGYTALEYKSTIRK 290

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R  RP I++SSDFIVGFPGET+DDF  TM L+D +GY  +FSF YS R GTP + + + 
Sbjct: 291 LREQRPGISLSSDFIVGFPGETEDDFAKTMKLIDDVGYDASFSFVYSQRPGTPAAALDDD 350

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440
             + +K  RL  LQ  +       + + VG    +L+E   K+  + L+GR+   + V  
Sbjct: 351 TPQELKLARLQTLQAAIEANVRRISASRVGTRQTILVEGPSKKNPQELMGRTECNRIVNF 410

Query: 441 NSKN---HNIGDIIKVRITDVKISTLYGELVV 469
           +        IG ++ V IT+    +L G  V+
Sbjct: 411 DGGPTPSRLIGQMLDVTITEALPHSLRGTPVL 442


>gi|225024104|ref|ZP_03713296.1| hypothetical protein EIKCOROL_00972 [Eikenella corrodens ATCC
           23834]
 gi|224943129|gb|EEG24338.1| hypothetical protein EIKCOROL_00972 [Eikenella corrodens ATCC
           23834]
          Length = 441

 Score =  471 bits (1213), Expect = e-131,   Method: Composition-based stats.
 Identities = 193/448 (43%), Positives = 281/448 (62%), Gaps = 13/448 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQ--GYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           ++ +++++GCQMN YDS +M  +   +  G E+V   D+AD+I+ NTC +REKA EKV+S
Sbjct: 2   KKVYIRTFGCQMNEYDSDKMLAVLAEEHGGIEQVAEPDNADIILFNTCSVREKAQEKVFS 61

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-E 141
            LGRI+ +K        ++++ VAGCVA  EG  I+ R+P V+VV GPQT +RLP+++ +
Sbjct: 62  DLGRIKPIKQK----NPNVIIGVAGCVASQEGAAIIERAPYVDVVFGPQTLHRLPKMIVD 117

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           +   G   VD  +   +KF+ L        R  G +AF++I EGC K+C+FCVVPYTRG 
Sbjct: 118 KETTGHSQVDISFPEIEKFDHLPPA-----RVDGGSAFISIMEGCSKYCSFCVVPYTRGE 172

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR L  V+ E   L   GV EI LLGQNVNA+RG+  +GE C F+ LL  + EI G+ 
Sbjct: 173 EFSRPLGDVLTEIAGLAQQGVKEINLLGQNVNAYRGEMDNGEICDFATLLRIVHEIPGIE 232

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           RLR+TTSHPR+ SD +I+ + DL  L+ +LHLP+QSGSDR+L +M R +TA EY+ II +
Sbjct: 233 RLRFTTSHPREFSDAIIECYRDLPKLVSHLHLPIQSGSDRVLSAMKRGYTALEYKSIIRK 292

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R++RPD+ +SSDFIVGFPGET+ +F  T+ LV  I +  +F F YSPR GTP +N+ + 
Sbjct: 293 LRAIRPDLCLSSDFIVGFPGETEREFEQTLKLVKDIAFDLSFVFIYSPRPGTPAANLPDD 352

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVL 440
                K  RL  L + +  +    N   +G +   L+E    K+  +L  R+   + V  
Sbjct: 353 TPHEEKVRRLEALNEVIEAETARINQTMIGTVQRCLVEGISKKDPDQLQARTANNRVVNF 412

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 I  ++++ IT+    +L GELV
Sbjct: 413 TGDVSLINQMVEIEITEAFTFSLRGELV 440


>gi|148555302|ref|YP_001262884.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Sphingomonas
           wittichii RW1]
 gi|229891001|sp|A5V8Y0|MIAB_SPHWW RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|148500492|gb|ABQ68746.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Sphingomonas wittichii
           RW1]
          Length = 453

 Score =  471 bits (1213), Expect = e-131,   Method: Composition-based stats.
 Identities = 249/447 (55%), Positives = 311/447 (69%), Gaps = 6/447 (1%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
             P+ F VKS+GCQMNVYD  RM ++  +QG    +S D ADL+VLNTCHIREKAAEKVY
Sbjct: 8   PAPKSFHVKSFGCQMNVYDGARMAELLEAQGMHAADSADAADLVVLNTCHIREKAAEKVY 67

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S +GRI        +     ++ VAGCVAQAEG EI RR+P V++VVGPQ Y+ LP+L+ 
Sbjct: 68  SDIGRIVKKAADAEEGRARPMIAVAGCVAQAEGPEIPRRAPAVDIVVGPQAYHNLPQLVA 127

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
            A  G+R +DTD     KF+ L        R++G TAFLT+QEGCDKFCT+CVVPYTRG 
Sbjct: 128 DAAEGRRALDTDMPAASKFDTLP-----KRRRQGPTAFLTVQEGCDKFCTYCVVPYTRGA 182

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           EISR    +VDEA+ L+D G  EITLLGQNVNAW G+   G       L+ +L  + GL 
Sbjct: 183 EISRPWGAIVDEAKALVDAGAREITLLGQNVNAWTGEDDRGRTQGLDGLIRALDALPGLA 242

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+RYTTSHP DMSD LI AHG++  LMP+LHLPVQ+GSDRILK+MNR H A  Y ++I+R
Sbjct: 243 RIRYTTSHPNDMSDGLIAAHGEVAKLMPFLHLPVQAGSDRILKAMNRSHDAAGYLRLIER 302

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R+ RPDIA+S DFIVGFPGETD+DF AT+ +V  + +AQAFSFKYSPR GTP ++M  Q
Sbjct: 303 VRAARPDIAVSGDFIVGFPGETDEDFEATLAIVRAVDHAQAFSFKYSPRPGTPAASMDGQ 362

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           V   V  ERL  LQ  L EQQ  FN A VG+  EVLIE+ GK+ G+ +G+SPWLQSV++ 
Sbjct: 363 VAPAVMDERLQRLQALLNEQQHRFNLATVGKRCEVLIERDGKKPGQRIGKSPWLQSVIVE 422

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                IG ++ V I     ++L G LV
Sbjct: 423 DGPA-IGTLVTVDIVSAGPNSLSGALV 448


>gi|118478993|ref|YP_896144.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
           thuringiensis str. Al Hakam]
 gi|118418218|gb|ABK86637.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus thuringiensis
           str. Al Hakam]
          Length = 524

 Score =  471 bits (1213), Expect = e-131,   Method: Composition-based stats.
 Identities = 183/450 (40%), Positives = 271/450 (60%), Gaps = 15/450 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
             ++F++++YGCQMN +D+  M  +F + GYE   S +DAD+++LNTC IRE A  KV+ 
Sbjct: 79  TGRKFYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFG 138

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELL 140
            LG +++LK    +   DLL+ V GC++Q E    +I++++  V++V G    +RLP +L
Sbjct: 139 ELGHLKSLK----RRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYIL 194

Query: 141 ERARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           + A F K  V   +S E D  E L  V     R+  + A++ I  GCDKFCT+C+VPYTR
Sbjct: 195 KDAMFSKETVVEVWSKEGDVIENLPKV-----RRGDIKAWVNIMYGCDKFCTYCIVPYTR 249

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G E SR    ++ E R L  NG  EITLLGQNVNA  GK  +  +    DL+  L ++  
Sbjct: 250 GKERSRRPEDIIQEIRHLAANGYKEITLLGQNVNA-YGKDFEDIEYGLGDLMDELRKVD- 307

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           + R+R+TTSHPRD  D LI+  G    L+ ++HLPVQSGS  +LK M R+++   Y +++
Sbjct: 308 IARIRFTTSHPRDFDDHLIEVLGKGGNLVEHIHLPVQSGSTEMLKIMARKYSREHYLELV 367

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            +I+   P+  +++D IVGFP ETD+ F  TM L  ++G+  AF+F YSPR GTP + M 
Sbjct: 368 RKIKEAIPNAVLTTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMK 427

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSV 438
           + V   VK ERL  L   + +  +  ND   GQI+EVL++   K   + L G +   + V
Sbjct: 428 DNVPMEVKKERLQRLNALVNKLAIEKNDRYKGQIVEVLVDGESKNNPEVLAGYTRTNKLV 487

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468
              +    IG ++KV++TD K  +L GELV
Sbjct: 488 NFVAPKSLIGQLVKVKVTDAKTWSLNGELV 517


>gi|15599175|ref|NP_252669.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Pseudomonas
           aeruginosa PAO1]
 gi|107103498|ref|ZP_01367416.1| hypothetical protein PaerPA_01004568 [Pseudomonas aeruginosa PACS2]
 gi|116052019|ref|YP_789138.1| hypothetical protein PA14_12350 [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218889737|ref|YP_002438601.1| hypothetical protein PLES_09951 [Pseudomonas aeruginosa LESB58]
 gi|254236873|ref|ZP_04930196.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
 gi|254242666|ref|ZP_04935988.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
 gi|296387492|ref|ZP_06876967.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Pseudomonas
           aeruginosa PAb1]
 gi|313109420|ref|ZP_07795380.1| hypothetical protein PA39016_001790020 [Pseudomonas aeruginosa
           39016]
 gi|12230974|sp|Q51470|MIAB_PSEAE RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|122261166|sp|Q02SE8|MIAB_PSEAB RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|9950171|gb|AAG07367.1|AE004816_3 conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
 gi|115587240|gb|ABJ13255.1| conserved hypothetical protein [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126168804|gb|EAZ54315.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
 gi|126196044|gb|EAZ60107.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
 gi|218769960|emb|CAW25722.1| conserved hypothetical protein [Pseudomonas aeruginosa LESB58]
 gi|310881882|gb|EFQ40476.1| hypothetical protein PA39016_001790020 [Pseudomonas aeruginosa
           39016]
          Length = 446

 Score =  471 bits (1213), Expect = e-131,   Method: Composition-based stats.
 Identities = 202/450 (44%), Positives = 282/450 (62%), Gaps = 13/450 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++ F++++GCQMN YDS RM D+    Q  E   +  +AD+I+LNTC IREKA EKV+
Sbjct: 1   MAKKLFIETHGCQMNEYDSSRMADLLGEHQALEVTENAAEADVILLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S LG  R LK        DL++ V GCVA  EG  I  R+P V+VV GPQT +RLPE+++
Sbjct: 61  SKLGMWRELKQQ----NPDLVIGVGGCVASQEGAAIRERAPYVDVVFGPQTLHRLPEMID 116

Query: 142 RARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
            AR  ++  VD  +   +KF+RL        R  G TAF+++ EGC K+C+FCVVPYTRG
Sbjct: 117 AARSTRKPQVDVSFPEIEKFDRLP-----EPRVDGPTAFVSVMEGCSKYCSFCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR    V+ E   L +NGV E+TLLGQNVN +RG   DG    F++LL  ++ + G+
Sbjct: 172 EEVSRPFDDVIAEVIHLAENGVREVTLLGQNVNGFRGLTHDGRLADFAELLRVVAAVDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+RYTTSHP + SD LI+AH ++  L+ ++HLPVQSGSDR+L +M R HT  EY+  I 
Sbjct: 232 ERIRYTTSHPLEFSDALIQAHAEVPELVKFIHLPVQSGSDRVLAAMKRNHTVLEYKSRIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++++  PDI ISSDFIVGFPGET+ DF  TM LV+ +G+  +FSF YS R GTP +++ +
Sbjct: 292 KLKAAVPDICISSDFIVGFPGETEKDFEQTMKLVEDVGFDFSFSFIYSARPGTPAADLAD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVV 439
            + E VK +RL  LQ ++ +Q    +   VG    +L+     K+ G L GR+   + V 
Sbjct: 352 DLPEEVKKQRLQILQSRIHQQGYEISRRMVGSTQRILVTDFSKKDPGMLQGRTENNRIVN 411

Query: 440 LNSKNH-NIGDIIKVRITDVKISTLYGELV 468
               N   IG   +V I D    +L G L+
Sbjct: 412 FRCDNPRLIGQFAQVHIDDALPHSLRGTLI 441


>gi|328675997|gb|AEB28672.1| tRNA-i(6)A37 methylthiotransferase [Francisella cf. novicida 3523]
          Length = 442

 Score =  471 bits (1213), Expect = e-131,   Method: Composition-based stats.
 Identities = 190/447 (42%), Positives = 278/447 (62%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYER-VNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ F+K+ GCQMN YDS RM ++     +    +   DAD+I++NTC IREKA EKV+  
Sbjct: 5   KKVFIKTLGCQMNEYDSARMHEVLNEHFHTVKTDDYKDADIILINTCSIREKAQEKVFHE 64

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK    K   DL++ V GCVA  EGE I++R+P V++V GPQT +RLPE++++ 
Sbjct: 65  LGRWKGLK----KTNEDLIIGVGGCVASQEGENIIKRAPFVDLVFGPQTIHRLPEMIKQK 120

Query: 144 RFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           +  ++  VD  +   +KF+ L        +  G  A+++I EGCDK+C++CVVPYTRG E
Sbjct: 121 QKTQQSQVDISFPEVEKFDYLP-----EPKAEGAKAYVSIMEGCDKYCSYCVVPYTRGPE 175

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           ++R    V+ E   L + GV EITLLGQNVN + G   +G+    + L++ ++EI G+ R
Sbjct: 176 VNRPFEDVLAECAILAEQGVKEITLLGQNVNHYLGPMENGQTADLALLIHFIAEIDGIER 235

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP + S  LI A+  +  L  +LHLPVQ GSDRIL +M R HT  E++Q I ++
Sbjct: 236 IRFTTSHPVEFSQNLIDAYATVPELANHLHLPVQHGSDRILINMKRNHTILEFKQKIRKL 295

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R++RPDI ISSDFIVGFPGET++DF+  +DLV +I + Q+FSF YS R GTP +++ +  
Sbjct: 296 RAIRPDITISSDFIVGFPGETEEDFQKLLDLVKEINFDQSFSFIYSKRPGTPAADLPDDT 355

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLN 441
              VK +RL  LQ  L       +   VG    +L++    K+   L GR+   + V   
Sbjct: 356 PMEVKKDRLKRLQDLLNSNAQIISRQMVGTNQRILVDGTSKKDDNILSGRTENNRVVNFK 415

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                IG    V+IT+   ++L GEL+
Sbjct: 416 GDKSLIGQFAMVKITESLPNSLRGELI 442


>gi|89100706|ref|ZP_01173562.1| YmcB [Bacillus sp. NRRL B-14911]
 gi|89084581|gb|EAR63726.1| YmcB [Bacillus sp. NRRL B-14911]
          Length = 514

 Score =  471 bits (1213), Expect = e-130,   Method: Composition-based stats.
 Identities = 181/448 (40%), Positives = 266/448 (59%), Gaps = 15/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++F+++++GCQMN +D+  M  +F S GYE  ++++DA++I+LNTC IRE A  KV+  L
Sbjct: 69  RKFYIRTFGCQMNEHDTEVMAGIFLSLGYEPTDTVEDANVILLNTCAIRENAENKVFGEL 128

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G +++LK    KE  DLL+ V GC++Q E    +IL+    V+++ G    +RLP +L+ 
Sbjct: 129 GHLKHLK----KERPDLLLGVCGCMSQEESVVNKILKTYDQVDMIFGTHNIHRLPNILQE 184

Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           A   K +V   +S E D  E L  V     RK  + A++ I  GCDKFCT+C+VPYTRG 
Sbjct: 185 AYMSKEMVVEVWSKEGDVIENLPKV-----RKGNIKAWVNIMYGCDKFCTYCIVPYTRGK 239

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR   +++ E R+L   G  EITLLGQNVNA  GK     +    DL+  + +I  + 
Sbjct: 240 ERSRRPEEIIQEVRQLAAQGYQEITLLGQNVNA-YGKDFTDLQYGLGDLMDEIRKID-IP 297

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHPRD  D LI+       L+ ++HLPVQSGS  +LK M R++T  +Y +++ +
Sbjct: 298 RIRFTTSHPRDFDDHLIEVLAKGGNLLEHIHLPVQSGSTDVLKIMARKYTREQYLELVRK 357

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           IR+  P+   ++D IVG+P ETD+ F  T+ L  ++GY  A++F YSPR GTP + M + 
Sbjct: 358 IRAAIPNATFTTDIIVGYPNETDEQFEETLSLYKEVGYESAYTFIYSPREGTPAAKMKDN 417

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440
           V   VK ERL  L   + E          GQ +EVL+E   K   + L G +   + V  
Sbjct: 418 VPMEVKKERLQRLNALVNEMSAEAMKKYHGQTVEVLVEGESKNNPEVLAGYTRKNKLVNF 477

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 IG I+ V+ITD K  +L GE+V
Sbjct: 478 KGPKSAIGKIVSVKITDAKTWSLNGEMV 505


>gi|229890679|sp|A4XYW1|MIAB_PSEMY RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
          Length = 447

 Score =  471 bits (1213), Expect = e-130,   Method: Composition-based stats.
 Identities = 204/450 (45%), Positives = 288/450 (64%), Gaps = 13/450 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++ +++++GCQMN YDS RM D+    Q  E     ++AD+I+LNTC IREKA +KV+
Sbjct: 1   MTKKLYIETHGCQMNEYDSSRMVDLLGEHQALEVTEKPEEADVILLNTCSIREKAQDKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S LGR R LK +      DL++ V GCVA  EG  I  R+P V+VV GPQT +RLPE+++
Sbjct: 61  SQLGRWRELKQA----NPDLVIGVGGCVASQEGAAIRDRAPYVDVVFGPQTLHRLPEMID 116

Query: 142 RARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
            AR  K   VD  +   +KF+RL        R  G +AF+++ EGC K+CTFCVVPYTRG
Sbjct: 117 AARTTKTAQVDISFPEIEKFDRLP-----EPRVDGPSAFVSVMEGCSKYCTFCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR L+ V+ E  +L D GV E+TLLGQNVN +RG   DG    F++LL++++ + G+
Sbjct: 172 EEVSRPLADVLLEITQLTDKGVKEVTLLGQNVNGYRGATPDGRIADFAELLHAVAALDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+RYTTSHP + SD +I AH ++  L+ YLHLPVQSGSDRIL +M R HTA EY+  I 
Sbjct: 232 ERIRYTTSHPLEFSDAIIAAHAEIPQLVKYLHLPVQSGSDRILAAMKRNHTALEYKSRIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R+  PDI ISSDFIVGFPGET+ DF  TM L++ +G+  +FSF YS R GTP +++++
Sbjct: 292 KLRAAVPDILISSDFIVGFPGETEKDFEQTMKLIEDVGFDFSFSFIYSSRPGTPAADLVD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVV 439
              + VK +RL  LQ ++ +     +   VG +  +L+  +  K+ G L GR+   + V 
Sbjct: 352 DTPDEVKKQRLAILQHRINQYGFENSRRMVGTVQRILVSDYSKKDPGMLQGRTEQNRIVN 411

Query: 440 LNSKNH-NIGDIIKVRITDVKISTLYGELV 468
               N   IG  + V I D    +L G L+
Sbjct: 412 FRCDNPRLIGQFVDVHIDDALPHSLRGTLL 441


>gi|157376603|ref|YP_001475203.1| 2-alkenal reductase [Shewanella sediminis HAW-EB3]
 gi|229890656|sp|A8FZ02|MIAB_SHESH RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|157318977|gb|ABV38075.1| 2-alkenal reductase [Shewanella sediminis HAW-EB3]
          Length = 474

 Score =  471 bits (1213), Expect = e-130,   Method: Composition-based stats.
 Identities = 196/449 (43%), Positives = 282/449 (62%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++  +K++GCQMN YDS +M D+    +GY       +AD+++LNTC IREKA EKV+
Sbjct: 1   MSKKLHIKTWGCQMNEYDSSKMADLMDEYEGYTLTEEASEADVLLLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR + LK        DL++ V GCVA  EG+ I  R+  V+++ GPQT +RLPE+++
Sbjct: 61  HQLGRWKKLKEK----NPDLIIGVGGCVASQEGKVIKERAQCVDLIFGPQTLHRLPEMID 116

Query: 142 RARFG-KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           + R G K V+D  +   +KF++L        R  G +AF++I EGC K+C+FCVVPYTRG
Sbjct: 117 QIRDGGKAVIDISFPEIEKFDKLP-----EPRADGPSAFVSIMEGCSKYCSFCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR L  ++ E  +L D GV E+ LLGQNVNA+RG   D E CTF++LL  ++ I G+
Sbjct: 172 EEVSRPLDDIILEIAQLADQGVREVNLLGQNVNAYRGATHDDEICTFAELLRYVAAIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            RLR+TTSHP + +  +I  + D   L+ +LHLPVQSGSDRIL  M R H A EY+ II 
Sbjct: 232 DRLRFTTSHPIEFTQDIIDVYEDTPELVSFLHLPVQSGSDRILTQMKRGHMAIEYKSIIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           R+R  RPDI ISSDFI+GFPGE+  DF  TM L++ + +  +FSF YS R GTP +++ +
Sbjct: 292 RLRKARPDIQISSDFIIGFPGESKQDFADTMKLIEDVQFDHSFSFIYSARPGTPAADLPD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVV 439
            V    K ERL  LQ ++ +Q + ++   +G +  +L+E    K   +L GR+   + V 
Sbjct: 352 DVTLAEKKERLAILQDRITQQAMRYSRQMLGTVQRILVEGPSVKNPMELRGRTETSRVVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
             +   +IG  + V I DV  ++L G  V
Sbjct: 412 FEADPKHIGSFVDVEIVDVYTNSLRGTFV 440


>gi|158320587|ref|YP_001513094.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Alkaliphilus oremlandii
           OhILAs]
 gi|229890436|sp|A8MFD5|MIAB_ALKOO RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|158140786|gb|ABW19098.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Alkaliphilus oremlandii
           OhILAs]
          Length = 471

 Score =  471 bits (1213), Expect = e-130,   Method: Composition-based stats.
 Identities = 175/447 (39%), Positives = 271/447 (60%), Gaps = 13/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +++ + +YGCQMN +DS  +  M  + GY    + ++A+LI+ NTC +RE A  KVY  +
Sbjct: 33  KKYMITTYGCQMNEHDSETLSGMLENMGYSITTNKEEANLIIYNTCCVRENAELKVYGNI 92

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G ++ LK    K+  DL++ V GC+ Q     +EI R+   V++V G    YR PELL R
Sbjct: 93  GALKALK----KKNEDLIIAVCGCMMQQPQVVKEIKRKYRHVDLVFGTHNLYRFPELLSR 148

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           +   + +    +  E             NRK  +  F+ I  GC+ FCT+C+VPYTRG E
Sbjct: 149 SMETEGMFIEVWDEETGIVEGLPA----NRKYDLKGFINIMYGCNNFCTYCIVPYTRGRE 204

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR ++ ++ EA  L +NG  EITLLGQNVN+  GK L+     F+DLL +L++I G+ R
Sbjct: 205 RSREVADIIREATDLANNGTKEITLLGQNVNS-YGKTLE-HPIDFADLLRALNKIDGIER 262

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+ TSHP+D+S+ LI A  + D +  + HLP QSGS++ILK+MNR++T   Y  I+ ++
Sbjct: 263 IRFMTSHPKDLSERLIDAIAECDKVCEHFHLPFQSGSNQILKAMNRKYTKENYLSIVKKL 322

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           +   P+I +++D IVGFPGET++DF+ T+D+V +  Y  A++F YS R GTP + M  Q+
Sbjct: 323 KDRIPNIGLTTDIIVGFPGETEEDFQDTLDIVQEARYDSAYTFLYSIREGTPAAKMQNQI 382

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVLN 441
           DE VK ER   L  K+ E     N + + +++EVL+E   K +  KL+GR+   + V  +
Sbjct: 383 DEKVKQERFSRLLDKVNEISAEINQSYLNKVVEVLVEGPSKTDSNKLMGRTRQNKLVNFS 442

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                IG ++ VRI + +  +L GE++
Sbjct: 443 GDESLIGKLVNVRIVECRTFSLNGEVI 469


>gi|83746116|ref|ZP_00943171.1| COG0621, tRNA 2-methylthioadenosine synthase [Ralstonia
           solanacearum UW551]
 gi|207727985|ref|YP_002256379.1| hypothetical protein RSMK04402 [Ralstonia solanacearum MolK2]
 gi|207742384|ref|YP_002258776.1| hypothetical protein RSIPO_00571 [Ralstonia solanacearum IPO1609]
 gi|83727299|gb|EAP74422.1| COG0621, tRNA 2-methylthioadenosine synthase [Ralstonia
           solanacearum UW551]
 gi|206591228|emb|CAQ56840.1| conserved hypothetical protein [Ralstonia solanacearum MolK2]
 gi|206593774|emb|CAQ60701.1| conserved hypothetical protein [Ralstonia solanacearum IPO1609]
          Length = 464

 Score =  471 bits (1212), Expect = e-130,   Method: Composition-based stats.
 Identities = 203/458 (44%), Positives = 287/458 (62%), Gaps = 24/458 (5%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ F+K++GCQMN YDS +M D+   ++G    ++ +DAD+I+ NTC +REKA EKV+S 
Sbjct: 2   KKVFIKTFGCQMNEYDSDKMADVLNAAEGLVPTDTPEDADVILFNTCSVREKAQEKVFSD 61

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE-R 142
           LGR++ LK        DL+V V GCVA  EG  I+ R+P V+VV GPQT +RLPEL++ R
Sbjct: 62  LGRVKALKA----LNPDLVVGVGGCVASQEGASIVARAPYVDVVFGPQTLHRLPELIDAR 117

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            R G+  VD  +   +KF+ L        R  G +AF++I EGC K+C++CVVPYTRG E
Sbjct: 118 RRTGRPQVDVSFPEIEKFDHLPPA-----RVEGPSAFVSIMEGCSKYCSYCVVPYTRGEE 172

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG-----LDGEKCTFSDLLYSLSEI 257
           +SR    V+ E   L + GV E+TLLGQNVNA+ GK         E+  F+ LL  ++EI
Sbjct: 173 VSRPFEDVLAEVAGLAEQGVREVTLLGQNVNAYVGKMGSKANDSSERADFALLLEYVAEI 232

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
            G+ R+RYTTSHP++ +  LI+A+     L+ +LHLPVQ GSDRIL +M R +T  EY+ 
Sbjct: 233 PGIERIRYTTSHPKEFTSRLIEAYATNRKLVDHLHLPVQHGSDRILMAMKRGYTVLEYKS 292

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
           II ++R++RPDI+I++DFIVGFPGETD DF  TMDLV +IGY  +FSF YSPR GTP +N
Sbjct: 293 IIRKLRTIRPDISIATDFIVGFPGETDADFAKTMDLVHEIGYDNSFSFIYSPRPGTPAAN 352

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQ 436
           + +     VK ERL  LQ  +       ++  VG +  +L+E    K+  +L GR+   +
Sbjct: 353 LHDDTPHAVKLERLKHLQATIDANMARISEGMVGSVQRILVEGPSRKDPSELHGRTENNR 412

Query: 437 SVVLNSKNH-------NIGDIIKVRITDVKISTLYGEL 467
            V     +         +G ++ VRI      +L GE+
Sbjct: 413 VVNFALPDLPPARRDQLVGQMLDVRIVHAYPHSLRGEV 450


>gi|254485983|ref|ZP_05099188.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Roseobacter sp. GAI101]
 gi|214042852|gb|EEB83490.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Roseobacter sp. GAI101]
          Length = 462

 Score =  471 bits (1212), Expect = e-130,   Method: Composition-based stats.
 Identities = 240/446 (53%), Positives = 312/446 (69%), Gaps = 9/446 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
            P++ F+K+YGCQMNVYDS RM +      Y    +  DAD+I+LNTCHIREKAAEKVYS
Sbjct: 26  APKKLFIKTYGCQMNVYDSERMAESLGDA-YVETKTAADADMILLNTCHIREKAAEKVYS 84

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            LGR++ LK        DL + VAGCVAQAEG EI+RR P V++VVGPQ+Y+RLP +  R
Sbjct: 85  ELGRLKPLKA----LNPDLKIGVAGCVAQAEGAEIMRRQPAVDLVVGPQSYHRLPAMEAR 140

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            R GK  +DTD+  EDKFE++    G     R  +AFLT+QEGCDKFC FCVVPYTRG E
Sbjct: 141 VREGKTALDTDFPEEDKFEKMK---GRGKAARAPSAFLTVQEGCDKFCAFCVVPYTRGAE 197

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR  ++V+ EA +L++ GV E+TLLGQNVNA+ G G +G   T + L+  +++I GL R
Sbjct: 198 VSRPATRVLAEACELVERGVREVTLLGQNVNAYHGVGPEGADYTLARLIREIAKIDGLER 257

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +RYTTSHP DM D LI AHG++D LMPYLHLPVQSGSDRILK MNR HTA  Y ++I+RI
Sbjct: 258 IRYTTSHPNDMDDALIAAHGEVDKLMPYLHLPVQSGSDRILKRMNRSHTAESYLRLIERI 317

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R  RPDI +S DFIVGFP ETD DF ATMDLV ++ Y  A+SFKYS R GTP +     V
Sbjct: 318 RDARPDIVMSGDFIVGFPEETDADFEATMDLVREVKYGYAYSFKYSTRPGTPAAERA-LV 376

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
           D  V  +RL  LQ  +   Q     + VG+ + VL+EK G++ G++VG+S +L SV +++
Sbjct: 377 DAAVADDRLQRLQALITGHQREIQTSMVGRDLSVLVEKSGRDAGQMVGKSEYLHSVHIDN 436

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
              ++GD+++VRI D K ++L    +
Sbjct: 437 ATASVGDVVRVRIVDAKTNSLTARQI 462


>gi|254282405|ref|ZP_04957373.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [gamma proteobacterium
           NOR51-B]
 gi|219678608|gb|EED34957.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [gamma proteobacterium
           NOR51-B]
          Length = 454

 Score =  471 bits (1212), Expect = e-130,   Method: Composition-based stats.
 Identities = 208/449 (46%), Positives = 288/449 (64%), Gaps = 13/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
            P++ FV+++GCQMN YDS RM+D+   S G E     + AD+++LNTC IREKA EKV+
Sbjct: 5   TPKKLFVQTHGCQMNEYDSARMQDLLGESHGLEVTLDAEQADVLLLNTCSIREKAQEKVF 64

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR ++LK        DL++ V GCVA  EG EI +R+P V+++ GPQT +RLPE++E
Sbjct: 65  HQLGRWKHLKQK----NPDLIIGVGGCVASQEGAEIGKRAPYVDLIFGPQTLHRLPEMIE 120

Query: 142 RARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
             R G+  VVD  +   +KF+RL        +  G TAF++I EGC K+CTFCVVPYTRG
Sbjct: 121 SRRDGEPMVVDVSFPEIEKFDRLP-----EPKVDGPTAFVSIMEGCSKYCTFCVVPYTRG 175

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR +  V+ E   L + GV E+ LLGQNVNA+RG    GE   F+DLL  +  + G+
Sbjct: 176 EEVSRPVDDVIAEIAHLAERGVKEVNLLGQNVNAYRGLNHLGEVVDFADLLRLVDLVDGI 235

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+RYTTSHP + SD +I  + D+  L+ +LHLPVQSGSDRIL +M R HTA EY+  I 
Sbjct: 236 ERIRYTTSHPVEFSDAIIDCYADIPALVDHLHLPVQSGSDRILMAMKRGHTALEYKSKIR 295

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
            +R +RP+I++SSDFI+GFPGETD +F  TM L+D IG+  +FSF YS R GTP S++ +
Sbjct: 296 ALRRIRPNISMSSDFIIGFPGETDAEFAETMKLIDDIGFDNSFSFIYSARPGTPASDLPD 355

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVV 439
              E  K +RL  LQ ++ +Q  + +DA VG    VL+    K + G+L GR+   + V 
Sbjct: 356 NTPEATKKQRLQILQGRIAQQARAISDAMVGSRQRVLVTGIAKRDPGQLSGRTENNRVVN 415

Query: 440 L-NSKNHNIGDIIKVRITDVKISTLYGEL 467
              +    IG+ + V I D   ++L G L
Sbjct: 416 FCCTDTALIGEFVDVDIVDAYTNSLRGVL 444


>gi|165976746|ref|YP_001652339.1| bifunctional enzyme involved in thiolation andmethylation of tRNA
           [Actinobacillus pleuropneumoniae serovar 3 str. JL03]
 gi|165876847|gb|ABY69895.1| bifunctional enzyme involved in thiolation andmethylation of tRNA
           [Actinobacillus pleuropneumoniae serovar 3 str. JL03]
          Length = 463

 Score =  471 bits (1212), Expect = e-130,   Method: Composition-based stats.
 Identities = 201/436 (46%), Positives = 288/436 (66%), Gaps = 12/436 (2%)

Query: 36  MNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSR 94
           MN YDS +M D+  S  G E  +  ++AD+++LNTC IREKA EKV+S LGR +N K   
Sbjct: 1   MNEYDSSKMADLLNSTHGLELTDKPEEADVLLLNTCSIREKAQEKVFSQLGRWKNWK--- 57

Query: 95  IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR-VVDTD 153
            K+  DL++ V GCVA  EGE I  R+P V++V GPQT +RLPE++ + R G R +VD  
Sbjct: 58  -KDKPDLIIGVGGCVASQEGEHIRDRAPFVDIVFGPQTLHRLPEMINKIRGGDRAIVDIS 116

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           +   +KF+RL        R  G TAF++I EGC+K+C+FCVVPYTRG E+SR +  V+ E
Sbjct: 117 FPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCSFCVVPYTRGEEVSRPVDDVLFE 171

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
             +L + GV E+ LLGQNVNA+RG+  DG  CTF++LL  ++ I G+ R+RYTTSHP + 
Sbjct: 172 IAQLAEQGVREVNLLGQNVNAYRGETFDGGICTFAELLRLVAAIDGIDRVRYTTSHPIEF 231

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
           +D +I+ + D   L+ +LHLP+QSG+DR+L  M R HTA EY+ II ++R VRP+I ISS
Sbjct: 232 TDDIIEVYRDTPELVSFLHLPIQSGADRVLTMMKRNHTALEYKAIIRKLREVRPNIQISS 291

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLC 393
           DFIVGFPGET +DF  TM +++++ +  +FSF YS R GTP +++ + + E  K  RL  
Sbjct: 292 DFIVGFPGETAEDFEQTMKVIEQVNFDMSFSFIYSARPGTPAADLPDDISEEEKKARLAR 351

Query: 394 LQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNSKNHNIGDIIK 452
           LQ+++  Q + F+ A +G    VL+E   K+   +L GR+   + V        IG  + 
Sbjct: 352 LQQRINHQAMQFSRAMLGTEQRVLVEGPSKKDIMELTGRTENNRIVNFQGTPDMIGKFVD 411

Query: 453 VRITDVKISTLYGELV 468
           ++ITDV  ++L GE+V
Sbjct: 412 IKITDVYTNSLRGEVV 427


>gi|254482536|ref|ZP_05095775.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [marine gamma
           proteobacterium HTCC2148]
 gi|214037227|gb|EEB77895.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [marine gamma
           proteobacterium HTCC2148]
          Length = 443

 Score =  471 bits (1212), Expect = e-130,   Method: Composition-based stats.
 Identities = 203/449 (45%), Positives = 290/449 (64%), Gaps = 13/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++ ++K++GCQMN YDS RM D+   S       + ++AD+++LNTC IREKA EKV+
Sbjct: 1   MSKKLYIKTHGCQMNEYDSARMRDLLEDSHDLVPTENPEEADVLLLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR ++LK        DL++ V GCVA  EGE I +R+P V++V GPQT +RLPE++E
Sbjct: 61  HQLGRWKHLKQK----NPDLIIGVGGCVASQEGEAIGKRAPYVDLVFGPQTLHRLPEMME 116

Query: 142 RARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           +   G   +VD  +   +KF+RL        +  G TAF++I EGC K+CTFCVVPYTRG
Sbjct: 117 QRGPGGTLIVDVSFPEIEKFDRLP-----EPKVDGPTAFVSIMEGCSKYCTFCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR L  V+ E   L   GV E+ LLGQNVNA+RG   D E   F++LL+ +++I G+
Sbjct: 172 EEVSRPLDDVIAEIAHLAGKGVKEVNLLGQNVNAYRGDSHDCEIVDFAELLHYVAKIPGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+RYTTSHP + SD LI A+ D+  L+ +LHLPVQSGSD+IL +M R HTA EY+  I 
Sbjct: 232 ERIRYTTSHPVEFSDALINAYADIPQLVSHLHLPVQSGSDKILAAMKRGHTALEYKSKIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
            +R +RPDI+ISSDFI+GFPGET+ DF  TM L++ IG+  +FSF YS R GTP S++ +
Sbjct: 292 HLRKIRPDISISSDFIIGFPGETEKDFADTMKLIEDIGFDVSFSFIYSARPGTPASDLPD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVV 439
              E+ K +RL  LQ ++ +     +   VG    +L+     K+ G+L GR+   ++V 
Sbjct: 352 ATSEDTKKQRLQILQARINQNAQEISRRMVGSTQTILVTGVSRKDPGQLQGRTENNRAVN 411

Query: 440 LNSKNH-NIGDIIKVRITDVKISTLYGEL 467
            +  +H  IG+ I+V I +   ++L G L
Sbjct: 412 FSCTDHELIGEFIQVEIIEALPNSLRGVL 440


>gi|146329852|ref|YP_001210121.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Dichelobacter nodosus
           VCS1703A]
 gi|229890515|sp|A5EXA7|MIAB_DICNV RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|146233322|gb|ABQ14300.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Dichelobacter nodosus
           VCS1703A]
          Length = 456

 Score =  470 bits (1211), Expect = e-130,   Method: Composition-based stats.
 Identities = 196/447 (43%), Positives = 284/447 (63%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           +  ++++YGCQMN YDS +M  +   S G   V + ++AD+++LNTC +REKA EKV+S 
Sbjct: 6   KHVYIETYGCQMNEYDSSKMLAVLKNSHGITPVATPEEADVLLLNTCSVREKAQEKVFSQ 65

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR ++LK         L++ V GCVA  EGE I RR+P V+VV GPQT +RLP L+E A
Sbjct: 66  LGRWKSLKER----KPHLIIGVGGCVASQEGEMIRRRAPEVDVVFGPQTLHRLPNLIEEA 121

Query: 144 RFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           +  +  VVD  +   +KF+ L        R  G TA++++ EGC K+CT+CVVPYTRG E
Sbjct: 122 QRSRGGVVDVSFPEIEKFDHLP-----EPRAEGPTAYVSVMEGCSKYCTYCVVPYTRGAE 176

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           ISR    V+ E   L   GV EI LLGQNVNA+RG   DG     + L+  ++ I  + R
Sbjct: 177 ISRPFDDVLAECATLAAQGVREINLLGQNVNAYRGAMHDGTIADLALLIEYVAAIPNIGR 236

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP + SD LI+ +  +  L+ +LHLPVQSGS+RIL  M R +   EY++ + +I
Sbjct: 237 IRFTTSHPSEFSDALIETYRRVPKLVSHLHLPVQSGSNRILALMKRDYKVAEYQEKLAKI 296

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R++RPDI+ SSDFIVGFPGE ++DF+ATMDL++ + +  ++SF YS R GTP S M ++V
Sbjct: 297 RAIRPDISFSSDFIVGFPGEEEEDFQATMDLIEAVFFDTSYSFIYSQRPGTPASTMPDRV 356

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVLN 441
              VK ERL  LQ ++ E   S ++A VG    VL+++  ++  + + GR+   + V  +
Sbjct: 357 PLTVKKERLARLQARILEMAASISEAMVGTEQWVLVDRLSRKSEREVSGRTENNRVVNFS 416

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
           +    IG   KV+IT    ++L G L+
Sbjct: 417 APASLIGRFAKVQITAAYKNSLRGRLI 443


>gi|319639318|ref|ZP_07994069.1| hypothetical protein HMPREF0604_01693 [Neisseria mucosa C102]
 gi|317399502|gb|EFV80172.1| hypothetical protein HMPREF0604_01693 [Neisseria mucosa C102]
          Length = 440

 Score =  470 bits (1211), Expect = e-130,   Method: Composition-based stats.
 Identities = 196/448 (43%), Positives = 282/448 (62%), Gaps = 13/448 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQ--GYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           ++ F++++GCQMN YDS +M  +   +  G E+V   DDAD+I+ NTC +REKA EK++S
Sbjct: 2   KKVFIRTFGCQMNEYDSEKMLSVLAEEHGGIEQVTQPDDADIILFNTCSVREKAQEKIFS 61

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-E 141
            LGR+R LK        DL++ VAGCVA  EGE I++R+P V+VV GPQT +RLP+L+ +
Sbjct: 62  DLGRVRPLKEK----NPDLIIGVAGCVASQEGENIVKRAPYVDVVFGPQTLHRLPKLIVD 117

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           +   G   +D  +   +KF+ L        R  G +AF++I EGC K+C++CVVPYTRG 
Sbjct: 118 KETTGLSQIDISFPEIEKFDHLPPA-----RVEGGSAFISIMEGCSKYCSYCVVPYTRGE 172

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR L+ V+ E   L   GV EI LLGQNVNA+RG+  +GE C F+ LL  + EI G+ 
Sbjct: 173 EFSRPLNDVLTEIAGLAQQGVKEINLLGQNVNAYRGEMENGEICDFATLLRIVHEIPGIE 232

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           RLR+TTSHPR+ +D +I+ + DL  L+ +LHLP+QSGSDR+L +M R +TA EY+ II +
Sbjct: 233 RLRFTTSHPREFTDAIIECYRDLPKLVSHLHLPIQSGSDRVLSAMKRGYTALEYKSIIRK 292

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R++RPD+ +SSDFIVGFPGET+ +F  T+ LV  I +  +F F YSPR GTP +N+ + 
Sbjct: 293 LRAIRPDLCLSSDFIVGFPGETEREFEQTLKLVKDIAFDLSFVFIYSPRPGTPAANLHDD 352

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVL 440
                K  RL  L + +  +    N   VG +   L+E    K+  +L  R+   + V  
Sbjct: 353 TPHEEKVRRLEALNEVIEAETARINQTMVGTVQRCLVEGISKKDPDQLQARTANNRVVNF 412

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 I  +I + IT+    +L G+ V
Sbjct: 413 TGTPDMINQMIDLEITEAYTFSLKGKPV 440


>gi|229890698|sp|A9HZZ2|MIAB_BORPD RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
          Length = 480

 Score =  470 bits (1211), Expect = e-130,   Method: Composition-based stats.
 Identities = 198/447 (44%), Positives = 290/447 (64%), Gaps = 13/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ +++++GCQMN YDS +M D+    QG E  ++ +DAD+I+ NTC +REKA EKV+S 
Sbjct: 32  RKLYIRTFGCQMNEYDSDKMADVLRGDQGLELTDNPEDADVILFNTCSVREKAQEKVFSD 91

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR+++LK    K   DL++ V GCVA  EGE I++R+P V+VV GPQT +RLPEL+ R 
Sbjct: 92  LGRVQHLK----KLNPDLVIGVGGCVASQEGEAIVKRAPYVDVVFGPQTLHRLPELIRRR 147

Query: 144 RF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           R  G   VD  +   +KF+ L        R  G TAF++I EGC K+C+FCVVPYTRG E
Sbjct: 148 RASGASQVDISFPEIEKFDALPP-----PRIEGATAFVSIMEGCSKYCSFCVVPYTRGEE 202

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLV 261
           +SR    V+ E   L D GV E+TLLGQNVNA+RG   D GE   F+ LL  + EI G+ 
Sbjct: 203 VSRPFDDVLVEVADLADQGVKEVTLLGQNVNAYRGPMGDTGEIADFATLLEYVHEIPGIE 262

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+RYTTSHP++M+  ++ A+ +L  L+ +LHLPVQ+GSDR+L +M R +T  E++ ++ R
Sbjct: 263 RIRYTTSHPKEMTQRMVDAYANLPKLVSFLHLPVQAGSDRVLAAMKRGYTTLEFKSVVRR 322

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R+ RP + +SSDFIVGFPGET++DF  TM L++ +G+  +FSF YS R GTP +++++ 
Sbjct: 323 LRAARPGLTLSSDFIVGFPGETEEDFDKTMKLIEDVGFDTSFSFIYSRRPGTPAADLVDD 382

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVL 440
             + VK  RL  LQ  +  Q  +   A VG    +L+E    ++  +L+GR+   + V  
Sbjct: 383 TPQEVKLRRLQQLQALINAQAAAIAQAMVGTRQRLLVEGPSRRDPNELMGRTENNRIVNF 442

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGEL 467
            +    IG ++ V ITD   ++L   +
Sbjct: 443 PAPARLIGQMVDVIITDAYPNSLRARV 469


>gi|300715843|ref|YP_003740646.1| tRNA-thiotransferase [Erwinia billingiae Eb661]
 gi|299061679|emb|CAX58795.1| tRNA-thiotransferase [Erwinia billingiae Eb661]
          Length = 474

 Score =  470 bits (1211), Expect = e-130,   Method: Composition-based stats.
 Identities = 192/450 (42%), Positives = 288/450 (64%), Gaps = 12/450 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++  +K++GCQMN YDS +M D+  S  GY      ++AD+++LNTC IREKA EKV+
Sbjct: 1   MTKKLLIKTWGCQMNEYDSSKMADLLNSTHGYTLTEVAEEADVLLLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR + LK        DL++ V GCVA  EG+ I +R+P V++V GPQT +RLPE++ 
Sbjct: 61  HQLGRWKLLKEK----NPDLVIGVGGCVASQEGDLIRQRAPCVDIVFGPQTLHRLPEMIN 116

Query: 142 RARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
             +  K  VVD  +   +KF+RL        R  G +AF++I EGC+K+CTFCVVPYTRG
Sbjct: 117 TVKGTKSPVVDISFPEIEKFDRLP-----EPRADGPSAFVSIMEGCNKYCTFCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR    ++ E  +L   GV E+ LLGQNVNA+RG+  DG+ C+F+DLL  ++ I G+
Sbjct: 172 EEVSRPSDDILFEIAQLASQGVREVNLLGQNVNAYRGETFDGDICSFADLLRLVAAIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+TTSHP + +D +I  + D   L+ +LHLPVQSGSDRIL  M R HTA EY+  I 
Sbjct: 232 DRIRFTTSHPIEFTDDIIDVYRDTPELVSFLHLPVQSGSDRILTLMKRSHTALEYKSTIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++ + RP + +SSDFI+GFPGET  DF  TM L+ +I +  +FSF YS R GTP +++ +
Sbjct: 292 KLLAARPAMQMSSDFIIGFPGETQQDFEQTMKLIGEINFDTSFSFIYSARPGTPAADLPD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439
            V +  K ERL  LQ+++ +Q ++++ + +G +  +L+E+  +    +L GR+   + V 
Sbjct: 352 DVSDEEKKERLWLLQQRINQQVMNWSRSKLGTVQRILVERLSRRNVMELAGRTECNRVVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELVV 469
                  IG  + V I +V  +++ G +V+
Sbjct: 412 FEGTPEMIGKFVDVEIVEVHTNSMRGVVVL 441


>gi|241759310|ref|ZP_04757416.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Neisseria flavescens
           SK114]
 gi|241320446|gb|EER56743.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Neisseria flavescens
           SK114]
          Length = 440

 Score =  470 bits (1211), Expect = e-130,   Method: Composition-based stats.
 Identities = 196/448 (43%), Positives = 282/448 (62%), Gaps = 13/448 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQ--GYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           ++ F++++GCQMN YDS +M  +   +  G E+V   DDAD+I+ NTC +REKA EKV+S
Sbjct: 2   KKVFIRTFGCQMNEYDSEKMLSVLAEEHGGIEQVTQPDDADIILFNTCSVREKAQEKVFS 61

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-E 141
            LGR+R LK        DL++ VAGCVA  EGE I++R+P V+VV GPQT +RLP+L+ +
Sbjct: 62  DLGRVRPLKEK----NPDLIIGVAGCVASQEGENIVKRAPYVDVVFGPQTLHRLPKLIVD 117

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           +   G   +D  +   +KF+ L        R  G +AF++I EGC K+C++CVVPYTRG 
Sbjct: 118 KETTGLSQIDISFPEIEKFDHLPPA-----RVEGGSAFISIMEGCSKYCSYCVVPYTRGE 172

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR L+ V+ E   L   GV EI LLGQNVNA+RG+  +GE C F+ LL  + EI G+ 
Sbjct: 173 EFSRPLNDVLTEIAGLAQQGVKEINLLGQNVNAYRGEMENGEICDFATLLRIVHEIPGIE 232

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           RLR+TTSHPR+ +D +I+ + DL  L+ +LHLP+QSGSDR+L +M R +TA EY+ II +
Sbjct: 233 RLRFTTSHPREFTDAIIECYRDLPKLVSHLHLPIQSGSDRVLSAMKRGYTALEYKSIIRK 292

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R++RPD+ +SSDFIVGFPGET+ +F  T+ LV  I +  +F F YSPR GTP +N+ + 
Sbjct: 293 LRAIRPDLCLSSDFIVGFPGETEREFEQTLKLVKDIAFDLSFVFIYSPRPGTPAANLHDD 352

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVL 440
                K  RL  L + +  +    N   +G +   L+E    K+  +L  R+   + V  
Sbjct: 353 TPHEEKVRRLEALNEVIEAETARINQTMIGTVQRCLVEGISKKDPDQLQARTANNRVVNF 412

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 I  +I + IT+    +L G+ V
Sbjct: 413 TGTPDMINQMIDLEITEAYTFSLKGKPV 440


>gi|229890695|sp|Q1QV24|MIAB_CHRSD RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
          Length = 448

 Score =  470 bits (1211), Expect = e-130,   Method: Composition-based stats.
 Identities = 201/451 (44%), Positives = 294/451 (65%), Gaps = 15/451 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++ F+K++GCQMN YDS RM D+   S   E  +   DAD+I+LNTC IREKA EKV+
Sbjct: 1   MAKKLFIKTHGCQMNEYDSARMADLLGESHALELTDDERDADVILLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR + LK +      DL++ V GCVA  EGE I +R+P V++V GPQT +RLP +L+
Sbjct: 61  HQLGRWKKLKAA----NPDLVIGVGGCVASQEGEHIKKRAPHVDMVFGPQTLHRLPTMLD 116

Query: 142 RARFGKRV--VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
             +  + +  VD  +   +KF+ L           G TAF+++ EGC K+CTFCVVPYTR
Sbjct: 117 SRQGAETISMVDVTFPEIEKFDHLP-----KPTSDGATAFVSVMEGCSKYCTFCVVPYTR 171

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G E+SR    V++E   L D GV EI LLGQNVNA+RG+   G++   ++L+  ++ ++G
Sbjct: 172 GEEVSRPFESVMEEVIHLADQGVREINLLGQNVNAYRGENQLGDEIDLAELIGCVAAVEG 231

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           + R+R+TTSHP + SD LI+A+G++  L+ +LHLPVQ+GSDRIL +M R HT  EY   +
Sbjct: 232 IDRIRFTTSHPVEFSDSLIEAYGEIPELVSHLHLPVQAGSDRILAAMKRGHTVEEYVDKL 291

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
           +RIR++RPDI+ SSDFI+GFPGET++DF  TM+L+ +IG+  +FSF YSPR GTP +N+ 
Sbjct: 292 ERIRALRPDISFSSDFIIGFPGETEEDFMDTMNLIQRIGFDASFSFVYSPRPGTPAANLE 351

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSV 438
           ++  E  K +RL  LQ++L +Q +  +   VG    +L+     K+ G+L GR+   + V
Sbjct: 352 DETPEATKKQRLAILQERLNQQTMQISRRMVGNTERILVTGFSPKDPGQLSGRTENNRVV 411

Query: 439 VLNSKN--HNIGDIIKVRITDVKISTLYGEL 467
              + N    IG  + V IT+   ++L G+L
Sbjct: 412 NFRAPNPTELIGYFVDVEITEALPNSLRGDL 442


>gi|15604640|ref|NP_221158.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Rickettsia
           prowazekii str. Madrid E]
 gi|6226397|sp|Q9ZCE8|MIAB_RICPR RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|3861335|emb|CAA15234.1| unknown [Rickettsia prowazekii]
 gi|292572459|gb|ADE30374.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Rickettsia prowazekii
           Rp22]
          Length = 445

 Score =  470 bits (1211), Expect = e-130,   Method: Composition-based stats.
 Identities = 234/449 (52%), Positives = 328/449 (73%), Gaps = 7/449 (1%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + ++ ++K+YGCQMNVYDS++++D+ +  GYE    + +AD+I+LNTCHIREKAAEK YS
Sbjct: 1   MSKKLYIKTYGCQMNVYDSVKIQDLLYPFGYESTEDIKEADIIILNTCHIREKAAEKTYS 60

Query: 83  FLGRIRNLKNSRIKEG-GDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
            LGRI+ L+N+R +EG    ++VVAGCVAQAEGEEI  R+P V++VVGPQ+YY LPEL+ 
Sbjct: 61  ELGRIKKLQNTRKQEGLNPAIIVVAGCVAQAEGEEIFSRTPYVDIVVGPQSYYNLPELIS 120

Query: 142 RA-RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           +  R  K+++D D+  E KF+ L          +G ++F+++QEGCDKFCTFCVVPYTRG
Sbjct: 121 KVVRHEKQLIDLDFVEEAKFDNLP----EQLYPQGASSFISVQEGCDKFCTFCVVPYTRG 176

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E SRS+ QV  E+ K + N   EI LLGQNVNA+ GKG   +  T +DLL  L++I  L
Sbjct: 177 AEFSRSVEQVYRESLKAVSNDAKEIILLGQNVNAYHGKGPKDKIFTLADLLKCLAQIPNL 236

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            RLRY TSHP DM+D LIK HG    LMP+LHLPVQSGS++ILK+MNR+H    Y  II+
Sbjct: 237 ARLRYMTSHPIDMTDDLIKLHGTEPKLMPFLHLPVQSGSNKILKAMNRKHDRDYYFNIIN 296

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           R+R  R DI +SSDFIVGFPGET+ DF  T+DLV ++ Y Q +SFKYSPR GTPG+   +
Sbjct: 297 RLREARSDIVLSSDFIVGFPGETEQDFEDTLDLVHRVKYGQCYSFKYSPRPGTPGAIRTD 356

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440
           Q+ E++K++RL  LQ++L  QQ++FN +CVG  + VL ++ GK + +++G++P++QSV +
Sbjct: 357 QIPEHIKSKRLTILQQELATQQLAFNQSCVGSTMRVLFDRDGKFEDQIIGKTPYMQSVYI 416

Query: 441 NSKN-HNIGDIIKVRITDVKISTLYGELV 468
           ++ N   +G I+ V IT   +++L GE++
Sbjct: 417 HNPNKSLLGKIVDVIITKAALNSLTGEIL 445


>gi|258544941|ref|ZP_05705175.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Cardiobacterium hominis
           ATCC 15826]
 gi|258519861|gb|EEV88720.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Cardiobacterium hominis
           ATCC 15826]
          Length = 456

 Score =  470 bits (1211), Expect = e-130,   Method: Composition-based stats.
 Identities = 191/447 (42%), Positives = 281/447 (62%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           +  +++++GCQMN YDS +M  +   S G   V++ ++AD+++LNTC IREKA EKV+S 
Sbjct: 6   KHVYIETHGCQMNEYDSSKMLAVLKVSHGITPVDTPEEADILLLNTCSIREKAQEKVFSQ 65

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +GR + LK++       +++ V GCVA  EGEE+ RR+P V+VV GPQT +RLP L+  A
Sbjct: 66  IGRWKPLKDA----KPHVIIAVGGCVASQEGEELRRRAPAVDVVFGPQTLHRLPNLISEA 121

Query: 144 RFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           +  +  VVD  +   +KF+ L        R  G TAF+++ EGC K+CTFCVVPYTRG E
Sbjct: 122 QEKRDGVVDVSFPEIEKFDHLP-----EPRAEGPTAFVSVMEGCSKYCTFCVVPYTRGEE 176

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR    V+ E   L   GV EI LLGQNVNA+RG   DG     + L+  ++ I G+ R
Sbjct: 177 VSRPFDDVIAECASLAAQGVREINLLGQNVNAYRGALFDGGTADLALLIEYVAAIDGIDR 236

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP + +D LI+ +  +  L+ +LHLPVQSGSD++L  M R H A +Y++ + R+
Sbjct: 237 VRFTTSHPVEFTDNLIEVYRRVPQLVSHLHLPVQSGSDKVLALMKRGHKAAQYKEKLARL 296

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R +RP+I+ SSDFIVGFPGE D DF ATM L++ + Y  +FSF YSPR GTP + M +++
Sbjct: 297 REIRPNISFSSDFIVGFPGEEDADFEATMQLIEDVFYDTSFSFIYSPRPGTPAAAMPDRI 356

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLVGRSPWLQSVVLN 441
             +VK  RL  LQ ++ +     +   VG    VL++   K+   ++ GR+   + V   
Sbjct: 357 PMDVKKARLARLQARILQMAAQISADMVGSEQWVLVDGVSKKNDKEVCGRTENNRVVNFQ 416

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
           + +  IG   KV+IT    ++L G L+
Sbjct: 417 APHALIGRFAKVQITAAYKNSLRGRLI 443


>gi|261365367|ref|ZP_05978250.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Neisseria mucosa ATCC
           25996]
 gi|298369521|ref|ZP_06980838.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Neisseria sp. oral taxon
           014 str. F0314]
 gi|288566157|gb|EFC87717.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Neisseria mucosa ATCC
           25996]
 gi|298282078|gb|EFI23566.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Neisseria sp. oral taxon
           014 str. F0314]
          Length = 442

 Score =  470 bits (1210), Expect = e-130,   Method: Composition-based stats.
 Identities = 196/448 (43%), Positives = 281/448 (62%), Gaps = 13/448 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQ--GYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           ++ F++++GCQMN YDS +M  +   +  G E+V   D+AD+I+ NTC +REKA EKV+S
Sbjct: 2   KKVFIRTFGCQMNEYDSEKMLAVLAEENGGIEQVTEADEADIILFNTCSVREKAQEKVFS 61

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-E 141
            LGR+R LK        DL++ VAGCVA  EGE I++R+P V+VV GPQT +RLP+++ +
Sbjct: 62  DLGRVRPLKEK----NPDLIIGVAGCVASQEGENIIKRAPYVDVVFGPQTLHRLPKMIVD 117

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           +   G   VD  +   +KF+ L        R  G  AF++I EGC K+C+FCVVPYTRG 
Sbjct: 118 KETSGLSQVDISFPEIEKFDHLPPA-----RVEGGAAFVSIMEGCSKYCSFCVVPYTRGE 172

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR L+ V+ E   L   GV EI LLGQNVNA+RG+  DGE C F+ LL  + EI G+ 
Sbjct: 173 EFSRPLNDVLTEIANLAQQGVKEINLLGQNVNAYRGEMEDGEICDFATLLRIVHEIPGIE 232

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHPR+ +D +I+ + DL  L+ +LHLP+QSGSDR+L +M R +TA EY+ II +
Sbjct: 233 RMRFTTSHPREFTDSIIECYRDLPKLVSHLHLPIQSGSDRVLSAMKRGYTALEYKSIIRK 292

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R++RPD+ +SSDFIVGFPGET+ +F  T+ LV  I +  +F F YSPR GTP +N+ + 
Sbjct: 293 LRAIRPDLCLSSDFIVGFPGETEREFEQTLKLVKDIAFDLSFVFIYSPRPGTPAANLPDD 352

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVL 440
                K  RL  L + +  +    N   +G +   L+E    K+  +L  R+   + V  
Sbjct: 353 TPHAEKVRRLEALNEVIEAETARINQTMIGTVQRCLVEGISKKDPDQLQARTANNRVVNF 412

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 I  +I + IT+    +L G+ V
Sbjct: 413 TGTPDMINQMIDLEITEAYTFSLRGKPV 440


>gi|228922487|ref|ZP_04085789.1| hypothetical protein bthur0011_34740 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228940850|ref|ZP_04103410.1| hypothetical protein bthur0008_34910 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228973771|ref|ZP_04134348.1| hypothetical protein bthur0003_35260 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228980326|ref|ZP_04140637.1| hypothetical protein bthur0002_34950 [Bacillus thuringiensis Bt407]
 gi|228779431|gb|EEM27687.1| hypothetical protein bthur0002_34950 [Bacillus thuringiensis Bt407]
 gi|228785923|gb|EEM33925.1| hypothetical protein bthur0003_35260 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228818864|gb|EEM64929.1| hypothetical protein bthur0008_34910 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228837201|gb|EEM82540.1| hypothetical protein bthur0011_34740 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|326941485|gb|AEA17381.1| tRNA 2-methylthioadenosine synthase [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 509

 Score =  470 bits (1210), Expect = e-130,   Method: Composition-based stats.
 Identities = 182/450 (40%), Positives = 269/450 (59%), Gaps = 15/450 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
             ++F++++YGCQMN +D+  M  +F + GYE   S +DAD+++LNTC IRE A  KV+ 
Sbjct: 64  TGRKFYIRTYGCQMNEHDTEVMAGIFTTLGYEPTFSTEDADVVLLNTCAIRENAENKVFG 123

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELL 140
            LG +++LK    +   DLL+ V GC++Q E    +I++++  V++V G    +RLP +L
Sbjct: 124 ELGHLKSLK----RRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYIL 179

Query: 141 ERARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           + A F K  V   +S E D  E L  V     R+  + A++ I  GCDKFCT+C+VPYTR
Sbjct: 180 KDAMFSKETVVEVWSKEGDVIENLPKV-----RRGDIKAWVNIMYGCDKFCTYCIVPYTR 234

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G E SR    ++ E R L  NG  EITLLGQNVNA  GK  +  +    DL+  L ++  
Sbjct: 235 GKERSRRPEDIIQEIRHLAANGYKEITLLGQNVNA-YGKDFEDIEYGLGDLMDELRKVD- 292

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           + R+R+TTSHPRD  D LI+  G    L+ ++HLPVQSGS  +LK M R+++   Y +++
Sbjct: 293 IARIRFTTSHPRDFDDHLIEVLGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELV 352

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            +I+   PD  +++D IVGFP ETD+ F  TM L  ++G+  AF+F YSPR GTP + M 
Sbjct: 353 RKIKEAIPDAVLTTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMK 412

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSV 438
           + V   VK ERL  L   +    +  N    GQI+EVL++   K   + L G +   + V
Sbjct: 413 DNVPMEVKKERLQRLNTLVNTLAIEKNSRYKGQIVEVLVDGESKNNPEVLAGYTRTNKLV 472

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468
              +    IG ++KV++T+ K  +L GELV
Sbjct: 473 NFVASKSLIGQLVKVKVTEAKTWSLNGELV 502


>gi|229018968|ref|ZP_04175810.1| hypothetical protein bcere0030_34820 [Bacillus cereus AH1273]
 gi|228742296|gb|EEL92454.1| hypothetical protein bcere0030_34820 [Bacillus cereus AH1273]
          Length = 509

 Score =  470 bits (1210), Expect = e-130,   Method: Composition-based stats.
 Identities = 181/450 (40%), Positives = 269/450 (59%), Gaps = 15/450 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
             ++F++++YGCQMN +D+  M  +F + GYE   S +DAD+++LNTC IRE A  KV+ 
Sbjct: 64  TGRKFYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFG 123

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELL 140
            LG +++LK    +   DLL+ V GC++Q E    +I++++  V++V G    +RLP +L
Sbjct: 124 ELGHLKSLK----RRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYIL 179

Query: 141 ERARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           + A F K  V   +S E D  E L  V     R+  + A++ I  GCDKFCT+C+VPYTR
Sbjct: 180 KDAMFSKETVVEVWSKEGDVIENLPKV-----RRGDIKAWVNIMYGCDKFCTYCIVPYTR 234

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G E SR    ++ E R L  NG  EITLLGQNVNA  GK  +  +    DL+  L ++  
Sbjct: 235 GKERSRRPEDIIQEIRHLAANGYKEITLLGQNVNA-YGKDFEDFEYGLGDLMDELRKVD- 292

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           + R+R+TTSHPRD  D LI+  G    L+ ++HLPVQSGS  +LK M R+++   Y +++
Sbjct: 293 IARIRFTTSHPRDFDDHLIEVLGKAGNLVEHIHLPVQSGSTEMLKIMARKYSREHYLELV 352

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            +I+   P+   ++D IVGFP ETD+ F  TM L  ++G+  AF+F YSPR GTP + M 
Sbjct: 353 RKIKEAIPNAVFTTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMK 412

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSV 438
           + V   VK ERL  L   +    +  N+   GQI+EVL++   K   + L G +   + V
Sbjct: 413 DNVPMEVKKERLQRLNTLVNTLAIEKNNRYKGQIVEVLVDGESKNNPEVLAGYTRTNKLV 472

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468
              +    IG ++KV++T+ K  +L GELV
Sbjct: 473 NFVASKSLIGQLVKVKVTEAKTWSLNGELV 502


>gi|59800506|ref|YP_207218.1| hypothetical protein NGO0037 [Neisseria gonorrhoeae FA 1090]
 gi|75356482|sp|Q5FAI1|MIAB_NEIG1 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|59717401|gb|AAW88806.1| conserved hypothetical protein [Neisseria gonorrhoeae FA 1090]
          Length = 442

 Score =  470 bits (1210), Expect = e-130,   Method: Composition-based stats.
 Identities = 195/448 (43%), Positives = 281/448 (62%), Gaps = 13/448 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQ--GYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           ++ F++++GCQMN YDS +M  +   +  G E+V   D+AD+I+ NTC +REKA EKV+S
Sbjct: 2   KKVFIRTFGCQMNEYDSEKMLSVLAEEHGGIEQVTQADEADIILFNTCSVREKAQEKVFS 61

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-E 141
            LGR+R LK         L++ VAGCVA  EGE I++R+P V+VV GPQT +RLP+++ +
Sbjct: 62  DLGRVRPLKEK----NPGLIIGVAGCVASQEGENIIKRAPYVDVVFGPQTLHRLPKMIVD 117

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           +   G   VD  +   +KF+ L        R  G  AF++I EGC K+C+FCVVPYTRG 
Sbjct: 118 KETSGLSQVDISFPEIEKFDHLPPA-----RVEGGAAFVSIMEGCSKYCSFCVVPYTRGE 172

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR L+ V+ E   L   GV EI LLGQNVNA+RG+  DGE C F+ LL  + EI G+ 
Sbjct: 173 EFSRPLNDVLTEIANLAQQGVKEINLLGQNVNAYRGEMDDGEICDFATLLRIVHEIPGIE 232

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHPR+ +D +I+ + DL  L+ +LHLP+QSGSDR+L +M R +TA EY+ II +
Sbjct: 233 RMRFTTSHPREFTDSIIECYRDLPKLVSHLHLPIQSGSDRVLSAMKRGYTALEYKSIIRK 292

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R++RPD+ +SSDFIVGFPGET+ +F  T+ LV  I +  +F F YSPR GTP +N+ + 
Sbjct: 293 LRAIRPDLCLSSDFIVGFPGETEREFEQTLKLVKDIAFDLSFVFIYSPRPGTPAANLPDD 352

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVL 440
                K  RL  L + +  +    N   +G +   L+E    K+  +L  R+   + V  
Sbjct: 353 TPHEEKVRRLEALNEVIEAETARINQTMIGTVQRCLVEGISKKDPDQLQARTVNNRVVNF 412

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 I  +I + IT+    +L G++V
Sbjct: 413 TGTPDMINQMIDLEITEAYTFSLRGKIV 440


>gi|253681530|ref|ZP_04862327.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Clostridium botulinum D
           str. 1873]
 gi|253561242|gb|EES90694.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Clostridium botulinum D
           str. 1873]
          Length = 447

 Score =  470 bits (1210), Expect = e-130,   Method: Composition-based stats.
 Identities = 176/448 (39%), Positives = 276/448 (61%), Gaps = 15/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +RFF+ ++GCQMN  DS ++  +    GY R +  DDAD+++ NTC +RE A +KVY  L
Sbjct: 11  KRFFISTWGCQMNEEDSEKISGLLKGIGYTRTDIRDDADVVIFNTCCVRENAEQKVYGHL 70

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQA--EGEEILRRSPIVNVVVGPQTYYRLPELLER 142
           G ++ LK        DL+++V GC+ Q     E+++ + P V+V+ G    Y+LPE +ER
Sbjct: 71  GELKALKRK----NPDLILIVTGCMMQQKGMPEKVMEKFPHVDVIAGTYNSYKLPEYIER 126

Query: 143 AR-FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
            +  GK +++     +D  E L +     +RK  + AF+TI  GC+ FC++C+VPY RG 
Sbjct: 127 VKTEGKSIIEIWDKEKDIVEGLPV-----DRKSDIKAFVTIMYGCNNFCSYCIVPYVRGR 181

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR    +VDE + L+  G  EITLLGQNVN+  GKGL  E   F+DLL  +++I+GL 
Sbjct: 182 ERSRDPQNIVDEIKDLVSKGYKEITLLGQNVNS-YGKGLIPE-INFADLLRMVNKIEGLE 239

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+ TSHP+D+SD LIKA  + + +    H  +QSGS +IL+ MNR++T  +Y  ++ +
Sbjct: 240 RIRFMTSHPKDVSDELIKAMAECEKVCEQGHFALQSGSTKILEKMNRKYTREDYLNLVKK 299

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R   P+I IS+D IVG+PGET++DF  T+ +V +I +  AF+F YS R GTP +   +Q
Sbjct: 300 LRVAMPNIGISTDIIVGYPGETEEDFEETLSIVKEIEFDSAFTFIYSKREGTPAAKHEDQ 359

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVL 440
           V ++VK  R   L + + E     N    G+++EVL+E   K +  KL+GR+   + V  
Sbjct: 360 VPDDVKHARFNRLVEAINEIMARKNKKFDGEVVEVLVEGPSKNDDTKLMGRTRTGKLVNF 419

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
           +   +N+G ++ ++IT     +L GE++
Sbjct: 420 DGDINNVGKLVNIKITKANSFSLTGEII 447


>gi|218898872|ref|YP_002447283.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus G9842]
 gi|228902275|ref|ZP_04066435.1| hypothetical protein bthur0014_34530 [Bacillus thuringiensis IBL
           4222]
 gi|228909596|ref|ZP_04073419.1| hypothetical protein bthur0013_37480 [Bacillus thuringiensis IBL
           200]
 gi|228966715|ref|ZP_04127759.1| hypothetical protein bthur0004_35210 [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|229890420|sp|B7ITM4|MIAB_BACC2 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|218543596|gb|ACK95990.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus G9842]
 gi|228792814|gb|EEM40372.1| hypothetical protein bthur0004_35210 [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228849885|gb|EEM94716.1| hypothetical protein bthur0013_37480 [Bacillus thuringiensis IBL
           200]
 gi|228857390|gb|EEN01890.1| hypothetical protein bthur0014_34530 [Bacillus thuringiensis IBL
           4222]
          Length = 509

 Score =  470 bits (1210), Expect = e-130,   Method: Composition-based stats.
 Identities = 182/450 (40%), Positives = 269/450 (59%), Gaps = 15/450 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
             ++F++++YGCQMN +D+  M  +F + GYE   S +DAD+++LNTC IRE A  KV+ 
Sbjct: 64  TGRKFYIRTYGCQMNEHDTEVMAGIFTTLGYEPTFSTEDADVVLLNTCAIRENAENKVFG 123

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELL 140
            LG +++LK    +   DLL+ V GC++Q E    +I++++  V++V G    +RLP +L
Sbjct: 124 ELGHLKSLK----RRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYIL 179

Query: 141 ERARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           + A F K  V   +S E D  E L  V     R+  + A++ I  GCDKFCT+C+VPYTR
Sbjct: 180 KDAMFSKETVVEVWSKEGDVIENLPKV-----RRGDIKAWVNIMYGCDKFCTYCIVPYTR 234

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G E SR    ++ E R L  NG  EITLLGQNVNA  GK  +  +    DL+  L ++  
Sbjct: 235 GKERSRRPEDIIQEIRHLAANGYKEITLLGQNVNA-YGKDFEDVEYGLGDLMDELRKVD- 292

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           + R+R+TTSHPRD  D LI+  G    L+ ++HLPVQSGS  +LK M R+++   Y +++
Sbjct: 293 IARIRFTTSHPRDFDDHLIEVLGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELV 352

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            +I+   PD  +++D IVGFP ETD+ F  TM L  ++G+  AF+F YSPR GTP + M 
Sbjct: 353 RKIKEAIPDAVLTTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMK 412

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSV 438
           + V   VK ERL  L   +    +  N    GQI+EVL++   K   + L G +   + V
Sbjct: 413 DNVPMEVKKERLQRLNTLVNTLAIEKNSRYKGQIVEVLVDGESKNNPEVLAGYTRTNKLV 472

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468
              +    IG ++KV++T+ K  +L GELV
Sbjct: 473 NFVASKSLIGQLVKVKVTEAKTWSLNGELV 502


>gi|188591273|ref|YP_001795873.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Cupriavidus
           taiwanensis LMG 19424]
 gi|229890506|sp|B2AHA4|MIAB_CUPTR RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|170938167|emb|CAP63153.1| isopentenyl-adenosine A37 tRNA methylthiolase, Fe-S protein
           [Cupriavidus taiwanensis LMG 19424]
          Length = 450

 Score =  470 bits (1210), Expect = e-130,   Method: Composition-based stats.
 Identities = 203/456 (44%), Positives = 291/456 (63%), Gaps = 20/456 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ FVK+YGCQMN YDS +M D+   SQG E  ++++DAD+I+ NTC +REKA EKV+S 
Sbjct: 2   KKVFVKTYGCQMNEYDSDKMVDVLNASQGLEATDNVEDADVILFNTCSVREKAQEKVFSE 61

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER- 142
           LGR++ LK        DL++ V GCVA  EG  I+ R+P V+VV GPQT +RLP+L+ R 
Sbjct: 62  LGRMKALKA----VKPDLVIGVGGCVASQEGASIVSRAPYVDVVFGPQTLHRLPDLIARR 117

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            R G+  VD  +   +KF+ L        R  G +AF++I EGC K+C++CVVPYTRG E
Sbjct: 118 QRTGQSQVDISFPEIEKFDHLPPA-----RVEGPSAFVSIMEGCSKYCSYCVVPYTRGEE 172

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG-EKCTFSDLLYSLSEIKGLV 261
           +SR    V+ E   L + GV E+TLLGQNVNA+RGK  D  E   F+ L+  ++EI G+ 
Sbjct: 173 VSRPFEDVLAEVAGLAEQGVREVTLLGQNVNAYRGKMGDTSEIADFALLIEYVAEIPGIE 232

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+RYTTSHP++ +  L++ +G  D L+ +LHLPVQ  SDRIL +M R ++  EY+ II R
Sbjct: 233 RIRYTTSHPKEFTSRLVELYGRCDKLVNHLHLPVQHASDRILMAMKRGYSVLEYKSIIRR 292

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R++RPD+++SSDFIVGFPGETD DF   M ++++IGY  +FSF +SPR GTP +N+ + 
Sbjct: 293 LRALRPDMSMSSDFIVGFPGETDADFDKLMAMIEEIGYDTSFSFIFSPRPGTPAANLHDD 352

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVL 440
               VK +RL  LQ  + E     +   VG +  +L+E    K+  +L GR+   + V  
Sbjct: 353 TPREVKLQRLQRLQATIEENVQRISQGMVGTVQRILVEGPARKDPTELHGRTENNRVVNF 412

Query: 441 -------NSKNHNIGDIIKVRITDVKISTLYGELVV 469
                    ++  +G ++ V IT     +L GE+VV
Sbjct: 413 ALPGVPQAGRDRLVGQLVDVSITQAFPHSLRGEIVV 448


>gi|229086321|ref|ZP_04218499.1| hypothetical protein bcere0022_29080 [Bacillus cereus Rock3-44]
 gi|228697016|gb|EEL49823.1| hypothetical protein bcere0022_29080 [Bacillus cereus Rock3-44]
          Length = 509

 Score =  470 bits (1210), Expect = e-130,   Method: Composition-based stats.
 Identities = 184/450 (40%), Positives = 267/450 (59%), Gaps = 15/450 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
             ++F++++YGCQMN +D+  M  +F + GYE   S  DAD+I+LNTC IRE A  KV+ 
Sbjct: 64  AGRKFYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTKDADVILLNTCAIRENAENKVFG 123

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELL 140
            LG ++ LK        DLL+ V GC++Q E    +I++++  V++V G    +RLP +L
Sbjct: 124 ELGHLKPLKQR----NPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYIL 179

Query: 141 ERARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           + A F K  V   +S E D  E L  V     R+  + A++ I  GCDKFCT+C+VPYTR
Sbjct: 180 KDAMFSKATVVEVWSKEGDVIENLPKV-----RRGDIKAWVNIMYGCDKFCTYCIVPYTR 234

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G E SR    +++E R L  NG  EITLLGQNVNA  GK  +  +    DL+  L +I  
Sbjct: 235 GKERSRRPEDIINEIRHLAANGYKEITLLGQNVNA-YGKDFEDLEYGLGDLMDELRKID- 292

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           + R+R+TTSHPRD  D LI+  G    L+ ++HLPVQSGS  +LK M R+++   Y +++
Sbjct: 293 IARVRFTTSHPRDFDDHLIEVLGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELV 352

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            +I+   P+  +++D IVGFP ETD+ F  TM L  ++G+  AF+F YSPR GTP + M 
Sbjct: 353 RKIKEAIPNAVLTTDIIVGFPNETDEQFEETMSLYREVGFDSAFTFIYSPREGTPAAKMK 412

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSV 438
           + V   VK ERL  L   + E  +  N   VGQI+EVL++   K     L G +   + V
Sbjct: 413 DNVPMEVKKERLQRLNALVNEYSIEKNKRYVGQIVEVLVDGESKNNPDVLAGYTRANKLV 472

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468
              +    I  ++KV++T+ K  +L GELV
Sbjct: 473 NFVAPKSAIAQLVKVKVTEAKTWSLNGELV 502


>gi|261379974|ref|ZP_05984547.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Neisseria subflava
           NJ9703]
 gi|284797173|gb|EFC52520.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Neisseria subflava
           NJ9703]
          Length = 440

 Score =  470 bits (1210), Expect = e-130,   Method: Composition-based stats.
 Identities = 195/448 (43%), Positives = 282/448 (62%), Gaps = 13/448 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQ--GYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           ++ F++++GCQMN YDS +M  +   +  G E+V   DDAD+I+ NTC +REKA EKV+S
Sbjct: 2   KKVFIRTFGCQMNEYDSEKMLSVLAEEHGGIEQVTQPDDADIILFNTCSVREKAQEKVFS 61

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-E 141
            LGR+R LK        ++++ VAGCVA  EGE I++R+P V+VV GPQT +RLP+L+ +
Sbjct: 62  DLGRVRPLKEK----NPNVIIGVAGCVASQEGENIVKRAPYVDVVFGPQTLHRLPKLIVD 117

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           +   G   +D  +   +KF+ L        R  G +AF++I EGC K+C++CVVPYTRG 
Sbjct: 118 KETTGLSQIDISFPEIEKFDHLPPA-----RVEGGSAFISIMEGCSKYCSYCVVPYTRGE 172

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR L+ V+ E   L   GV EI LLGQNVNA+RG+  +GE C F+ LL  + EI G+ 
Sbjct: 173 EFSRPLNDVLTEIAGLAQQGVKEINLLGQNVNAYRGEMENGEICDFATLLRIVHEIPGIE 232

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           RLR+TTSHPR+ +D +I+ + DL  L+ +LHLP+QSGSDR+L +M R +TA EY+ II +
Sbjct: 233 RLRFTTSHPREFTDAIIECYRDLPKLVSHLHLPIQSGSDRVLSAMKRGYTALEYKSIIRK 292

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R++RPD+ +SSDFIVGFPGET+ +F  T+ LV  I +  +F F YSPR GTP +N+ + 
Sbjct: 293 LRAIRPDLCLSSDFIVGFPGETEREFEQTLKLVKDIAFDLSFVFIYSPRPGTPAANLHDD 352

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVL 440
                K  RL  L + +  +    N   VG +   L+E    K+  +L  R+   + V  
Sbjct: 353 TPHEEKVRRLEALNEVIEAETARINQTMVGTVQRCLVEGISKKDPDQLQARTANNRVVNF 412

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 I  +I + IT+    +L G+ V
Sbjct: 413 TGTPDMINQMIDLEITEAYTFSLKGKPV 440


>gi|218510260|ref|ZP_03508138.1| putative 2-methylthioadenine synthetase (miaB-like) protein
           [Rhizobium etli Brasil 5]
          Length = 450

 Score =  470 bits (1209), Expect = e-130,   Method: Composition-based stats.
 Identities = 261/412 (63%), Positives = 321/412 (77%)

Query: 12  HMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCH 71
                ++      ++ F+K+YGCQMNVYDS RM D     GYE    M++ADL++LNTCH
Sbjct: 22  QAPEPMLRDGSNSRKVFIKTYGCQMNVYDSTRMSDALARDGYEPTEDMEEADLVLLNTCH 81

Query: 72  IREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ 131
           IREKAAEKVYS LGR+R +K  +  +G ++++ V GCVAQAEGEEILRR+P V+VV+GPQ
Sbjct: 82  IREKAAEKVYSALGRLREMKKKKAADGREMMIGVTGCVAQAEGEEILRRAPAVDVVIGPQ 141

Query: 132 TYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCT 191
           TY+RLPE L RA+ G+RVVDT+Y++EDKFE L I +    R RGVTAFLT+QEGCDKFCT
Sbjct: 142 TYHRLPEALRRAQQGQRVVDTEYAIEDKFEHLPIAESRKIRARGVTAFLTVQEGCDKFCT 201

Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLL 251
           FCVVPYTRG E+SR +SQ+V+EA KL++ GV EITLLGQNVNAW G G  GE  +  DLL
Sbjct: 202 FCVVPYTRGSEVSRPVSQIVEEAEKLVEAGVREITLLGQNVNAWHGAGPRGEAWSLGDLL 261

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
           Y L+EI GL RLRYTTSHPRDM D LI+AH DL  LMPYLHLPVQSGSDRILK+MNRRHT
Sbjct: 262 YRLAEIPGLARLRYTTSHPRDMDDRLIEAHRDLRALMPYLHLPVQSGSDRILKAMNRRHT 321

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
           A EY  +I+RIR+VRPDIA+S DFI GFPGETD DF  T+ LV+++ YAQAFSFKYS R 
Sbjct: 322 AAEYFSLIERIRTVRPDIALSGDFITGFPGETDADFEDTLRLVEEVRYAQAFSFKYSTRP 381

Query: 372 GTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK 423
           GTPG+ + +QV E +KAERL  LQ  L +QQ  F ++C+G+ I++L+EK G+
Sbjct: 382 GTPGAELKDQVPEEIKAERLERLQALLLKQQQEFAESCIGKEIDLLLEKPGR 433


>gi|331269503|ref|YP_004395995.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Clostridium botulinum
           BKT015925]
 gi|329126053|gb|AEB75998.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Clostridium botulinum
           BKT015925]
          Length = 452

 Score =  470 bits (1209), Expect = e-130,   Method: Composition-based stats.
 Identities = 173/448 (38%), Positives = 277/448 (61%), Gaps = 15/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +RFF+ ++GCQMN  DS ++  +    GY R +  DDAD+++ NTC +RE A +KVY  L
Sbjct: 16  KRFFISTWGCQMNEEDSEKISGLLKGIGYTRTDIRDDADVVIFNTCCVRENAEQKVYGHL 75

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQA--EGEEILRRSPIVNVVVGPQTYYRLPELLER 142
           G ++ LK        DL+++V GC+ Q     E+++ + P V+++ G    Y+LPE +ER
Sbjct: 76  GELKALKRK----NPDLILIVTGCMMQQKGMPEKVMEKFPHVDIIAGTYNSYKLPEYIER 131

Query: 143 AR-FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
            +  GK +++     +D  E L +     +RK  + AF+TI  GC+ FC++C+VPY RG 
Sbjct: 132 VKTEGKSIIEIWDKEKDIVEGLPV-----DRKSDIKAFVTIMYGCNNFCSYCIVPYVRGR 186

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR    ++DE + L+  G  EITLLGQNVN+  GKGL  E   F+DLL  +++I+GL 
Sbjct: 187 ERSRDPQNIIDEIKDLVSKGYKEITLLGQNVNS-YGKGLTPE-MNFADLLRMVNKIEGLE 244

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+ TSHP+D+SD LIKA  + + +    H  +QSGS +IL+ MNR++T  +Y  ++ +
Sbjct: 245 RIRFMTSHPKDVSDELIKAMAECEKVCEQGHFALQSGSTKILEKMNRKYTREDYLNLVKK 304

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R+  P++ IS+D IVG+PGET++DF+ T+ +V +I +  AF+F YS R GTP +   +Q
Sbjct: 305 LRAAMPNVGISTDIIVGYPGETEEDFQETLSIVKEIEFDSAFTFIYSKREGTPAAKHEDQ 364

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVL 440
           V ++VK  R   L + + E     N    G+++EVL+E   K +  KL+GR+   + V  
Sbjct: 365 VPDDVKHVRFNRLVEAINEIMSRKNKKFDGEVVEVLVEGPSKNDDTKLMGRTRTGKLVNF 424

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
           +    N+G ++ ++IT     +L GE++
Sbjct: 425 DGDISNVGKLVNIKITKANSFSLTGEII 452


>gi|325266776|ref|ZP_08133449.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Kingella denitrificans
           ATCC 33394]
 gi|324981778|gb|EGC17417.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Kingella denitrificans
           ATCC 33394]
          Length = 441

 Score =  470 bits (1209), Expect = e-130,   Method: Composition-based stats.
 Identities = 194/447 (43%), Positives = 286/447 (63%), Gaps = 13/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQ--GYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           ++ F++++GCQMN YDS +M  +   +  G E+VN  D AD+I+ NTC +REKA EKV+S
Sbjct: 2   KKVFIRTFGCQMNEYDSEKMLAVLAEEHGGIEQVNEPDGADIILFNTCSVREKAQEKVFS 61

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-E 141
            LGR+++LK    K+  ++++ VAGCVA  EGE I+ R+P V+VV GPQT +RLP+++ +
Sbjct: 62  DLGRVKHLK----KDNPNVIIGVAGCVASQEGEAIIERAPYVDVVFGPQTLHRLPKMIMD 117

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           +   G   VD  +   +KF+ L        R  G +AF++I EGC K+C+FCVVPYTRG 
Sbjct: 118 KETTGLSQVDISFPEIEKFDHLPPA-----RVEGGSAFISIMEGCSKYCSFCVVPYTRGE 172

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR L+ V+ E   L   GV EI LLGQNVNA+RG+  +GE C F+ LL  + EI G+ 
Sbjct: 173 EFSRPLNDVLTEIANLAQQGVKEINLLGQNVNAYRGEMENGEICDFATLLRIVHEIPGIE 232

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHPR+ SD +I+ + DL  L+ +LHLP+QSGSDR+L +M R +TA EY+ II +
Sbjct: 233 RMRFTTSHPREFSDAIIECYRDLPKLVSHLHLPIQSGSDRVLSAMKRGYTALEYKSIIRK 292

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R++RPD+ +SSDFIVGFPGET+ +F  T+ LV  I +  +F F YSPR GTP +N+ + 
Sbjct: 293 LRAIRPDLCLSSDFIVGFPGETEREFEQTLKLVKDIAFDLSFVFIYSPRPGTPAANLPDD 352

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVL 440
                K  RL  L + +  +    N   +G +   L+E    K+  +L  R+   + V  
Sbjct: 353 TPHEEKVRRLEALNEVIEAETARINQTMLGTVQRCLVEGVSKKDPDQLQARTANNRVVNF 412

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGEL 467
           +     I  ++ + IT+ +  +L G+L
Sbjct: 413 HGTADLINQMVDLEITEARTFSLSGKL 439


>gi|170728025|ref|YP_001762051.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Shewanella
           woodyi ATCC 51908]
 gi|229890658|sp|B1KDV4|MIAB_SHEWM RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|169813372|gb|ACA87956.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Shewanella woodyi ATCC
           51908]
          Length = 474

 Score =  470 bits (1209), Expect = e-130,   Method: Composition-based stats.
 Identities = 194/449 (43%), Positives = 284/449 (63%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++  +K++GCQMN YDS +M D+    +GY      ++AD+++LNTC IREKA EKV+
Sbjct: 1   MSKKLHIKTWGCQMNEYDSSKMADLMDEYKGYTLTEEAEEADVLLLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR + LK+       +L++ V GCVA  EG+ I  R+  V+++ GPQT +RLPE+++
Sbjct: 61  HQLGRWKKLKDK----NPNLIIGVGGCVASQEGKVIKDRAQCVDLIFGPQTLHRLPEMID 116

Query: 142 RARFG-KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           +   G K V+D  +   +KF+RL        R  G +AF++I EGC K+C+FCVVPYTRG
Sbjct: 117 QIEAGGKAVIDVSFPEIEKFDRLP-----EPRADGPSAFVSIMEGCSKYCSFCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR L  V+ E  +L + GV E+ LLGQNVNA+RG   D E CTF++LL  ++ I G+
Sbjct: 172 EEVSRPLDDVILEIAQLAEQGVREVNLLGQNVNAYRGATHDDEICTFAELLRYVAAIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            RLR+TTSHP + +  +I  + D   L+ +LHLPVQSGSDRIL  M R H A EY+ II 
Sbjct: 232 DRLRFTTSHPIEFTQDIIDVYEDTPELVSFLHLPVQSGSDRILTQMKRGHMAIEYKSIIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           R+R  RPDI +SSDFI+GFPGE+  DF  TM L++ + +  +FSF YS R GTP S++ +
Sbjct: 292 RLRKARPDIQVSSDFIIGFPGESKQDFEDTMKLIEDVQFDHSFSFIYSARPGTPASDLPD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVV 439
            V  + K ERL  LQ ++ +Q + ++   +G +  +L+E    K   +L GR+   + V 
Sbjct: 352 DVTLDEKKERLAILQDRITQQAMRYSRQMLGTVQRILVEGPSVKNPMELRGRTETSRVVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
             +   +IG  + V I DV  ++L G  +
Sbjct: 412 FEADPKHIGSFVDVEIVDVYTNSLRGNFI 440


>gi|15677701|ref|NP_274862.1| hypothetical protein NMB1866 [Neisseria meningitidis MC58]
 gi|304388407|ref|ZP_07370514.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Neisseria meningitidis
           ATCC 13091]
 gi|81784211|sp|Q9JXV8|MIAB_NEIMB RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|7227123|gb|AAF42200.1| conserved hypothetical protein [Neisseria meningitidis MC58]
 gi|304337588|gb|EFM03750.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Neisseria meningitidis
           ATCC 13091]
 gi|316985478|gb|EFV64425.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Neisseria meningitidis
           H44/76]
 gi|325139525|gb|EGC62065.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Neisseria meningitidis
           CU385]
 gi|325143760|gb|EGC66077.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Neisseria meningitidis
           M01-240013]
 gi|325200923|gb|ADY96378.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Neisseria meningitidis
           H44/76]
          Length = 442

 Score =  470 bits (1209), Expect = e-130,   Method: Composition-based stats.
 Identities = 196/448 (43%), Positives = 281/448 (62%), Gaps = 13/448 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQ--GYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           ++ F++++GCQMN YDS +M  +   +  G E+V   D+AD+I+ NTC +REKA EKV+S
Sbjct: 2   KKVFIRTFGCQMNEYDSDKMLAVLAEEHGGIEQVTQADEADIILFNTCSVREKAQEKVFS 61

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-E 141
            LGR+R LK         L++ VAGCVA  EGE I++R+P V+VV GPQT +RLP+++ +
Sbjct: 62  DLGRVRPLKEK----NPGLIIGVAGCVASQEGENIIKRAPYVDVVFGPQTLHRLPKMIVD 117

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           +   G   VD  +   +KF+ L        R  G  AF++I EGC K+C+FCVVPYTRG 
Sbjct: 118 KETSGLSQVDISFPEIEKFDHLPPA-----RVEGGAAFVSIMEGCSKYCSFCVVPYTRGE 172

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR L+ V+ E   L   GV EI LLGQNVNA+RG+  DGE C F+ LL  + EI G+ 
Sbjct: 173 EFSRPLNDVLTEIANLAQQGVKEINLLGQNVNAYRGEMDDGEICDFATLLRIVHEIPGIE 232

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHPR+ +D +I+ + DL  L+ +LHLP+QSGSDR+L +M R +TA EY+ II +
Sbjct: 233 RMRFTTSHPREFTDSIIECYRDLPKLVSHLHLPIQSGSDRVLSAMKRGYTALEYKSIIRK 292

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R++RPD+ +SSDFIVGFPGET+ +F  T+ LV  I +  +F F YSPR GTP +N+ + 
Sbjct: 293 LRAIRPDLCLSSDFIVGFPGETEREFEQTLKLVKDIAFDLSFVFIYSPRPGTPAANLPDD 352

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVL 440
                K  RL  L + +  +    N   VG +   L+E    K+  +L  R+   + V  
Sbjct: 353 TPHEEKVRRLEALNEVIEAETARINQTMVGTVQRCLVEGISKKDPDQLQARTANNRVVNF 412

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 I  +I + IT+    +L G++V
Sbjct: 413 TGTPDMINQMIDLEITEAYTFSLRGKVV 440


>gi|89074960|ref|ZP_01161405.1| putative 2-methylthioadenine synthetase [Photobacterium sp. SKA34]
 gi|89049199|gb|EAR54763.1| putative 2-methylthioadenine synthetase [Photobacterium sp. SKA34]
          Length = 475

 Score =  470 bits (1209), Expect = e-130,   Method: Composition-based stats.
 Identities = 196/449 (43%), Positives = 284/449 (63%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++  +K++GCQMN YDS +M D+   + G+E     ++AD+++LNTC IREKA EKV+
Sbjct: 1   MAKKLLIKTWGCQMNEYDSSKMADLLNAANGFELTEIPEEADVVLLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR          +  DL++ V GCVA  EG+ I +R+P V+V+ GPQT +RLPE+++
Sbjct: 61  HQLGRW----KKLKDKKPDLVIGVGGCVATQEGDSIRKRAPYVDVIFGPQTLHRLPEMIK 116

Query: 142 RARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           R++  ++ V+D  +   +KF+ L        R  G TAF++I EGC K+CT+CVVPYTRG
Sbjct: 117 RSQSNEKTVMDISFPEVEKFDNLP-----EPRAEGATAFVSIMEGCSKYCTYCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR L  V+ E  +L + GV E+ LLGQNVNA+RG   DGE  +F++LL  ++ I G+
Sbjct: 172 EEVSRPLDDVLFEIAQLAEQGVREVNLLGQNVNAYRGPMHDGEVASFAELLRLVAAIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+RYTTSHP + +D +I  + D   L+ YLHLPVQSGSDRIL  M R HT  EY+  I 
Sbjct: 232 DRIRYTTSHPIEFTDDIIDVYTDTPELVNYLHLPVQSGSDRILTMMKRPHTVLEYKSKIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R VRPDI +SSDFIV FPGE+D DF  TM L+  I +  ++SF +SPR GTP ++   
Sbjct: 292 KLRKVRPDITMSSDFIVAFPGESDQDFEDTMKLIRDIDFDISYSFIFSPRPGTPAADYPC 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439
            + E+VK ERL  LQ+++  Q +      +     +L+E   ++   +L GR+   + V 
Sbjct: 352 DLSEDVKKERLYALQQQINSQAMRHARQMLDTEQRILVEGPSRKNVMELRGRTENNRIVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG  + V+I DV  ++L GELV
Sbjct: 412 FEGSADLIGQFVDVKIVDVFTNSLRGELV 440


>gi|229174437|ref|ZP_04301969.1| hypothetical protein bcere0006_35300 [Bacillus cereus MM3]
 gi|228608997|gb|EEK66287.1| hypothetical protein bcere0006_35300 [Bacillus cereus MM3]
          Length = 509

 Score =  470 bits (1209), Expect = e-130,   Method: Composition-based stats.
 Identities = 181/450 (40%), Positives = 269/450 (59%), Gaps = 15/450 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
             ++F++++YGCQMN +D+  M  +F + GYE   S +DAD+++LNTC IRE A  KV+ 
Sbjct: 64  TGRKFYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFG 123

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELL 140
            LG +++LK    +   DLL+ V GC++Q E    +I++++  V++V G    +RLP +L
Sbjct: 124 ELGHLKSLK----RRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYIL 179

Query: 141 ERARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           + A F K  V   +S E D  E L  V     R+  + A++ I  GCDKFCT+C+VPYTR
Sbjct: 180 KDAMFSKETVVEVWSKEGDVIENLPKV-----RRGDIKAWVNIMYGCDKFCTYCIVPYTR 234

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G E SR    ++ E R L  NG  EITLLGQNVNA  GK  +  +    DL+  L ++  
Sbjct: 235 GKERSRRPEDIIQEIRHLAANGYKEITLLGQNVNA-YGKDFEDFEYGLGDLMDELRKVD- 292

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           + R+R+TTSHPRD  D LI+  G    L+ ++HLPVQSGS  +LK M R+++   Y +++
Sbjct: 293 IARIRFTTSHPRDFDDHLIEVLGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELV 352

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            +I+   P+   ++D IVGFP ETD+ F  TM L  ++G+  AF+F YSPR GTP + M 
Sbjct: 353 RKIKEAIPNAVFTTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMK 412

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSV 438
           + V   VK ERL  L   +    +  N+   GQI+EVL++   K   + L G +   + V
Sbjct: 413 DNVPMEVKKERLQRLNTLVNTLAIEKNNRYKGQIVEVLVDGESKNNPEVLAGYTRTNKLV 472

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468
              +    IG ++KV++T+ K  +L GELV
Sbjct: 473 NFVASKSLIGQLVKVKVTEAKTWSLNGELV 502


>gi|260774885|ref|ZP_05883786.1| tRNA-i(6)A37 methylthiotransferase [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260609140|gb|EEX35298.1| tRNA-i(6)A37 methylthiotransferase [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 474

 Score =  470 bits (1209), Expect = e-130,   Method: Composition-based stats.
 Identities = 194/449 (43%), Positives = 284/449 (63%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++  +K++GCQMN YDS +M D+   + GYE     ++AD+++LNTC IREKA EKV+
Sbjct: 1   MSKKLLIKTWGCQMNEYDSSKMADLLNAANGYELTEEPEEADVLLLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR + LK+ +      +   V    A  EG+ I  R+P V+V+ GPQT +RLPE+++
Sbjct: 61  HQLGRWKTLKDKKEGVVIGVGGCV----ATQEGDHIRERAPFVDVIFGPQTLHRLPEMIK 116

Query: 142 RARFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           +++  +  V+D  +   +KF+RL        R  G TAF++I EGC K+CT+CVVPYTRG
Sbjct: 117 QSQSNEAPVMDISFPEIEKFDRLP-----EPRAEGATAFVSIMEGCSKYCTYCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR +  V+ E  +L + GV E+ LLGQNVNA+RG   +G+ C+F++LL  ++ I G+
Sbjct: 172 EEVSRPMDDVLFEIAQLAEQGVREVNLLGQNVNAYRGPTHEGDICSFAELLRLVASIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+TTSHP + +D +I  + D   L+ +LHLPVQSGSDRIL  M R HT  EY+ II 
Sbjct: 232 DRIRFTTSHPLEFTDDIIAVYEDTPELVSFLHLPVQSGSDRILTMMKRPHTGIEYKSIIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R  RPDI ISSDFIVGFPGE+D D +ATM L+  + +  +FSF +SPR GTP ++   
Sbjct: 292 KLRKARPDIQISSDFIVGFPGESDMDHQATMKLIKDVDFDMSFSFIFSPRPGTPAADYPC 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439
            + E  K ERL  LQ+ +  Q + F+   +G    VL+E   K+   +L  R+   + V 
Sbjct: 352 DLSEQTKKERLYELQQTVNAQAMRFSRLMLGTEQRVLVEGPSKKNLMELRARTENNRVVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG  + V+ITDV  ++L GE+V
Sbjct: 412 FEGNAELIGQFVDVKITDVFANSLRGEIV 440


>gi|225076607|ref|ZP_03719806.1| hypothetical protein NEIFLAOT_01655 [Neisseria flavescens
           NRL30031/H210]
 gi|224952107|gb|EEG33316.1| hypothetical protein NEIFLAOT_01655 [Neisseria flavescens
           NRL30031/H210]
          Length = 440

 Score =  470 bits (1209), Expect = e-130,   Method: Composition-based stats.
 Identities = 196/448 (43%), Positives = 281/448 (62%), Gaps = 13/448 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQ--GYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           ++ F++++GCQMN YDS +M  +   +  G E+V   D+AD+I+ NTC +REKA EKV+S
Sbjct: 2   KKVFIRTFGCQMNEYDSEKMLSVLAEEHGGIEQVTQADEADIILFNTCSVREKAQEKVFS 61

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-E 141
            LGR+R LK        DL++ VAGCVA  EGE I++R+P V+VV GPQT +RLP+++ +
Sbjct: 62  DLGRVRPLKEK----NPDLIIGVAGCVASQEGENIIKRAPYVDVVFGPQTLHRLPKMIVD 117

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           +   G   VD  +   +KF+ L        R  G  AF++I EGC K+C+FCVVPYTRG 
Sbjct: 118 KETSGLSQVDISFPEIEKFDHLPPA-----RVEGGAAFVSIMEGCSKYCSFCVVPYTRGE 172

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR L+ V+ E   L   GV EI LLGQNVNA+RG+  +GE C F+ LL  + EI G+ 
Sbjct: 173 EFSRPLNDVLTEIAGLAQQGVKEINLLGQNVNAYRGEMENGEICDFATLLRIVHEIPGIE 232

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHPR+ +D +I+ + DL  L+ +LHLP+QSGSDR+L +M R +TA EY+ II +
Sbjct: 233 RMRFTTSHPREFTDAIIECYRDLPKLVSHLHLPIQSGSDRVLSAMKRGYTALEYKSIIRK 292

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R++RPD+ +SSDFIVGFPGET+ +F  T+ LV  I +  +F F YSPR GTP +N+ + 
Sbjct: 293 LRAIRPDLCLSSDFIVGFPGETEREFEQTLKLVKDIAFDLSFVFIYSPRPGTPAANLPDD 352

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVL 440
                K  RL  L + +  +    N   VG +   L+E    K+  +L  R+   + V  
Sbjct: 353 TPHEEKVRRLEALNEVIEAETARINQTMVGTVQRCLVEGISKKDPDQLQARTANNRVVNF 412

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 I  +I + IT+    +L G+ V
Sbjct: 413 TGTPDMINQMIDLEITEAYTFSLKGKPV 440


>gi|254804310|ref|YP_003082531.1| putative 2-methylthioadenine synthetase [Neisseria meningitidis
           alpha14]
 gi|254667852|emb|CBA03889.1| putative 2-methylthioadenine synthetase [Neisseria meningitidis
           alpha14]
 gi|325131508|gb|EGC54215.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Neisseria meningitidis
           M6190]
 gi|325139238|gb|EGC61784.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Neisseria meningitidis
           ES14902]
          Length = 442

 Score =  469 bits (1208), Expect = e-130,   Method: Composition-based stats.
 Identities = 195/448 (43%), Positives = 281/448 (62%), Gaps = 13/448 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQ--GYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           ++ F++++GCQMN YDS +M  +   +  G E+V   D+AD+I+ NTC +REKA EKV+S
Sbjct: 2   KKVFIRTFGCQMNEYDSDKMLAVLAEEHGGIEQVTQADEADIILFNTCSVREKAQEKVFS 61

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-E 141
            LGR+R LK         L++ VAGCVA  EGE I++R+P V+VV GPQT +RLP+++ +
Sbjct: 62  DLGRVRPLKEK----NPGLIIGVAGCVASQEGENIIKRAPYVDVVFGPQTLHRLPKMIVD 117

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           +   G   VD  +   +KF+ L        R  G  AF++I EGC K+C+FCVVPYTRG 
Sbjct: 118 KETSGLSQVDISFPEIEKFDHLPPA-----RVEGGAAFVSIMEGCSKYCSFCVVPYTRGE 172

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR L+ V+ E   L   GV EI LLGQNVNA+RG+  DGE C F+ LL  + EI G+ 
Sbjct: 173 EFSRPLNDVLTEIANLAQQGVKEINLLGQNVNAYRGEMDDGEICDFATLLRIVHEIPGIE 232

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHPR+ +D +I+ + DL  L+ +LHLP+QSGSDR+L +M R +TA EY+ II +
Sbjct: 233 RMRFTTSHPREFTDSIIECYRDLPKLVSHLHLPIQSGSDRVLSAMKRGYTALEYKSIIRK 292

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R++RPD+ +SSDFIVGFPGET+ +F  T+ LV  I +  +F F YSPR GTP +N+ + 
Sbjct: 293 LRAIRPDLCLSSDFIVGFPGETEREFEQTLKLVKDIAFDLSFVFIYSPRPGTPAANLPDD 352

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVL 440
                K  RL  L + +  +    N   +G +   L+E    K+  +L  R+   + V  
Sbjct: 353 TPHEEKVRRLEALNEVIEAETARINQTMIGTVQRCLVEGISKKDPDQLQARTANNRVVNF 412

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 I  +I + IT+    +L G++V
Sbjct: 413 TGTPDMINQMIDLEITEAYTFSLRGKVV 440


>gi|260767222|ref|ZP_05876163.1| tRNA-i(6)A37 methylthiotransferase [Vibrio furnissii CIP 102972]
 gi|260617730|gb|EEX42908.1| tRNA-i(6)A37 methylthiotransferase [Vibrio furnissii CIP 102972]
 gi|315180847|gb|ADT87761.1| 2-methylthioadenine synthetase [Vibrio furnissii NCTC 11218]
          Length = 474

 Score =  469 bits (1208), Expect = e-130,   Method: Composition-based stats.
 Identities = 195/449 (43%), Positives = 282/449 (62%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++  +K++GCQMN YDS +M D+  +  GYE     ++AD+++LNTC IREKA EKV+
Sbjct: 1   MSKKLLIKTWGCQMNEYDSSKMADLLNATNGYELTEEPEEADVLLLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR + LK+ +      +   V    A  EG+ I  R+P V+V+ GPQT +RLPE+++
Sbjct: 61  HQLGRWKTLKDKKPGVVIGVGGCV----ATQEGDHIRDRAPFVDVIFGPQTLHRLPEMIK 116

Query: 142 RARFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           +++     V+D  +   +KF+RL        R  G TAF++I EGC K+CT+CVVPYTRG
Sbjct: 117 QSQSDDAPVMDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCSKYCTYCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR +  V+ E  +L + GV E+ LLGQNVNA+RG   DG  C+F++LL  ++ I G+
Sbjct: 172 EEVSRPMDDVLFEIAQLAEQGVREVNLLGQNVNAYRGPMHDGTICSFAELLRLVASIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+TTSHP + +D +I  + D   L+ +LHLPVQSGSDRIL  M R HT  EY+ II 
Sbjct: 232 DRIRFTTSHPLEFTDDIIAVYEDTPELVSFLHLPVQSGSDRILTMMKRPHTGIEYKSIIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R  RPDI ISSDFIVGFPGE+D DF+ TM L+  + +  +FSF +SPR GTP ++   
Sbjct: 292 KLRKARPDIQISSDFIVGFPGESDKDFQDTMKLIRDVDFDMSFSFIFSPRPGTPAADYPC 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439
            + E  K ERL  LQ+++  Q + F+   +G    +L+E   K+   +L GR+   + V 
Sbjct: 352 DLTEETKKERLYELQQQINAQAMRFSRLMMGTEQRILVEGPSKKNLMELRGRTENNRVVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG  + V I DV  ++L GELV
Sbjct: 412 FEGPAELIGQFVDVNIVDVFPNSLRGELV 440


>gi|121608687|ref|YP_996494.1| (dimethylallyl)adenosine tRNA methylthiotransferase
           [Verminephrobacter eiseniae EF01-2]
 gi|229891021|sp|A1WIL9|MIAB_VEREI RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|121553327|gb|ABM57476.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Verminephrobacter
           eiseniae EF01-2]
          Length = 450

 Score =  469 bits (1208), Expect = e-130,   Method: Composition-based stats.
 Identities = 195/448 (43%), Positives = 289/448 (64%), Gaps = 15/448 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++ F+K++GCQMN YDS +M D+   +QGYE   ++++ADLI+ NTC +REKA EKV+
Sbjct: 1   MAKKVFIKTFGCQMNEYDSDKMADVLHAAQGYEPTQNVEEADLILFNTCSVREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S LGR+++LK   ++      + V GCVA  EG EI+RR+P V+VV GPQT +RLPELL+
Sbjct: 61  SDLGRVKHLKARGVR------IGVGGCVASQEGAEIIRRAPYVDVVFGPQTLHRLPELLQ 114

Query: 142 -RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
            R R  +  +D  +   +KF+ L          +G +AF++I EGC K+C++CVVPYTRG
Sbjct: 115 QRERLDQPQIDISFPEIEKFDHLPAAS-----VQGASAFVSIMEGCSKYCSYCVVPYTRG 169

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-GLDGEKCTFSDLLYSLSEIKG 259
            E+SR L  V+ E   L D GV E+TLLGQNVNA+RG+ G   ++   + LL  ++ I G
Sbjct: 170 EEVSRPLDDVLVEVAGLADQGVKEVTLLGQNVNAYRGRMGSTAQRADLALLLDYVAGIPG 229

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           + R+RYTTSHP + +  LI+A+  L  L  +LHLPVQ GSDRIL +M R +TA EY+  +
Sbjct: 230 VERIRYTTSHPNEFTPRLIEAYARLPKLANHLHLPVQHGSDRILMAMKRGYTAMEYKSTV 289

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            ++R++RPD+A+SSDFIVGFPGET DDF   M L+ ++ +  +FSF +SPR GTP + + 
Sbjct: 290 RKLRAIRPDLALSSDFIVGFPGETQDDFDKLMRLIAEVHFDNSFSFVFSPRPGTPAAGLP 349

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSV 438
           +     VK  RL  LQ  +     S + + VG +  +L+E   +    +L+GR+   + V
Sbjct: 350 DDTPHEVKLRRLQQLQGVIDTHIRSISASRVGTVQRILVEGASRRDAAELMGRTECNRVV 409

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGE 466
                 H +G ++++ IT+ +  TL G+
Sbjct: 410 NFAGPPHLVGQMVELTITEARAYTLRGQ 437


>gi|113866557|ref|YP_725046.1| 2-methylthioadenine synthetase [Ralstonia eutropha H16]
 gi|123134407|sp|Q0KE93|MIAB_RALEH RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|113525333|emb|CAJ91678.1| 2-Methylthioadenine synthetase [Ralstonia eutropha H16]
          Length = 450

 Score =  469 bits (1208), Expect = e-130,   Method: Composition-based stats.
 Identities = 201/456 (44%), Positives = 289/456 (63%), Gaps = 20/456 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ FVK+YGCQMN YDS +M D+   SQG E  +++++AD+I+ NTC +REKA EKV+S 
Sbjct: 2   KKVFVKTYGCQMNEYDSDKMVDVLNASQGLEPTDNVEEADVILFNTCSVREKAQEKVFSE 61

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER- 142
           LGR++ LK        DL++ V GCVA  EG  I+ R+P V+VV GPQT +RLP+L+ R 
Sbjct: 62  LGRMKALKA----VKPDLVIGVGGCVASQEGASIVSRAPYVDVVFGPQTLHRLPDLIARR 117

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            R G+  VD  +   +KF+ L        R  G +AF++I EGC K+C++CVVPYTRG E
Sbjct: 118 QRTGQSQVDISFPEIEKFDHLPPA-----RVEGPSAFVSIMEGCSKYCSYCVVPYTRGEE 172

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG-EKCTFSDLLYSLSEIKGLV 261
           +SR    V+ E   L + GV E+TLLGQNVNA+RGK  D  E   F+ L+  ++EI G+ 
Sbjct: 173 VSRPFEDVLAEVAGLAEQGVREVTLLGQNVNAYRGKMGDTTEIADFALLIEYVAEIPGIE 232

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+RYTTSHP++ +  L++ +G  D L+ +LHLPVQ  SDRIL +M R ++  EY+ II +
Sbjct: 233 RIRYTTSHPKEFTSRLVELYGRCDKLVNHLHLPVQHASDRILMAMKRGYSVLEYKSIIRK 292

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R +RPD+++SSDFIVGFPGETD DF   M ++++IGY  +FSF +SPR GTP +N+ + 
Sbjct: 293 LRVLRPDMSMSSDFIVGFPGETDADFEKLMAMIEEIGYDTSFSFIFSPRPGTPAANLHDD 352

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVL 440
               VK  RL  LQ  + E     +   VG +  +L+E    K+  +L GR+   + V  
Sbjct: 353 TPHEVKLRRLQRLQATIEENVQRISQNMVGTVQRILVEGPARKDPTELHGRTENNRVVNF 412

Query: 441 -------NSKNHNIGDIIKVRITDVKISTLYGELVV 469
                    ++  +G ++ V IT     +L GE+VV
Sbjct: 413 ALPGVPQAGRDRLVGQLVDVSITQAFPHSLRGEIVV 448


>gi|148244830|ref|YP_001219524.1| tRNA-thiotransferase [Candidatus Vesicomyosocius okutanii HA]
 gi|229891022|sp|A5CW77|MIAB_VESOH RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|146326657|dbj|BAF61800.1| tRNA-thiotransferase [Candidatus Vesicomyosocius okutanii HA]
          Length = 442

 Score =  469 bits (1207), Expect = e-130,   Method: Composition-based stats.
 Identities = 192/449 (42%), Positives = 286/449 (63%), Gaps = 11/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           +  + +++++GCQMN YDS +M D+   S      +    AD+++LNTC IREKA +K++
Sbjct: 1   MINKLYIRTFGCQMNEYDSNKMVDILKHSHDLTLTDDATSADVLLLNTCSIREKAQDKLF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR   LKN       +L++ V GCVA  EGE IL+R+P V+++ GPQT +RLP +L 
Sbjct: 61  HQLGRWSKLKNK----NPNLIIGVGGCVASQEGELILKRTPYVDIIFGPQTLHRLPNMLN 116

Query: 142 RARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
            A   K+  +D  +   +KF+ L        R   VTAF++I EGC K+CTFC+VPYTRG
Sbjct: 117 DALNNKKTSIDISFPEIEKFDHLP-----KPRTNSVTAFVSIMEGCSKYCTFCIVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            EISR  + V++E + L   GV EI LLGQNVNA++G   DGE    + L+  +++I G+
Sbjct: 172 EEISRPFNDVINEVKILASQGVREINLLGQNVNAYQGSMNDGEVSDLALLINIVAKISGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+RYTTSHP   SD LI+A+ ++  L+ +LHLPVQSGSD+IL+ M R + + EY+  I 
Sbjct: 232 KRIRYTTSHPNQFSDSLIEAYAEVPELVSHLHLPVQSGSDKILRLMKRGYMSIEYKSKIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R +RPDI+ISSDFI+GFPGE + DF  TM L+D+IG+ ++FSF YS R GTP ++  +
Sbjct: 292 KLRKIRPDISISSDFIIGFPGENEKDFLDTMILIDEIGFDKSFSFIYSVRPGTPAASYPD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440
            +D  VK +RL  +QK +       +   +G I +VL+E   K+  +L GR+  +++   
Sbjct: 352 DIDIQVKKQRLALIQKTINNNTEHISQLMIGSIQKVLVENITKKGNELFGRTENMRNTHF 411

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELVV 469
                 IG I+ V+IT  + ++L G+L+ 
Sbjct: 412 KGDKSLIGQIVNVKITKGRGNSLMGDLLT 440


>gi|261253662|ref|ZP_05946235.1| tRNA-i(6)A37 methylthiotransferase [Vibrio orientalis CIP 102891]
 gi|260937053|gb|EEX93042.1| tRNA-i(6)A37 methylthiotransferase [Vibrio orientalis CIP 102891]
          Length = 474

 Score =  469 bits (1207), Expect = e-130,   Method: Composition-based stats.
 Identities = 194/449 (43%), Positives = 282/449 (62%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++  +K++GCQMN YDS +M D+   + GYE     ++AD+++LNTC IREKA EKV+
Sbjct: 1   MSKKLLIKTWGCQMNEYDSSKMADLLNAANGYELTEEPEEADVLLLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR + LK+ +      +   V    A  EG+ I  R+P V+V+ GPQT +RLPE+++
Sbjct: 61  HQLGRWKTLKDKKEGVVIGVGGCV----ATQEGDHIRERAPFVDVIFGPQTLHRLPEMIK 116

Query: 142 RARFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           +++  +  V+D  +   +KF+RL        R  G TAF++I EGC K+CT+CVVPYTRG
Sbjct: 117 QSQSNEAPVMDISFPEIEKFDRLP-----EPRAEGATAFVSIMEGCSKYCTYCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR +  V+ E  +L D GV E+ LLGQNVNA+RG   +G+ C+F++LL  ++ I G+
Sbjct: 172 EEVSRPMDDVLFEIAQLADQGVREVNLLGQNVNAYRGPTHEGDICSFAELLRLVASIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+TTSHP + +D +I  + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II 
Sbjct: 232 DRIRFTTSHPLEFTDDIIAVYEDTPELVSFLHLPVQSGSDRILTMMKRPHTAIEYKSIIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R  RPDI ISSDFIVGFPGET  D + TM L+  + +  +FSF +SPR GTP ++   
Sbjct: 292 KLRKARPDIQISSDFIVGFPGETAKDHQDTMKLIKDVDFDMSFSFIFSPRPGTPAADYPC 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439
            V E  K ERL  LQ+ +  Q + ++   +     VL+E   K+   +L  R+   + V 
Sbjct: 352 DVPEQEKKERLYELQQTVNAQAMRYSRLMLDTEQRVLVEGPSKKNLMELRARTENNRVVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG  + V+ITDV  ++L G+LV
Sbjct: 412 FEGSADLIGQFVDVKITDVFANSLRGDLV 440


>gi|229098241|ref|ZP_04229188.1| hypothetical protein bcere0020_34750 [Bacillus cereus Rock3-29]
 gi|229104336|ref|ZP_04235005.1| hypothetical protein bcere0019_34840 [Bacillus cereus Rock3-28]
 gi|229117258|ref|ZP_04246636.1| hypothetical protein bcere0017_35380 [Bacillus cereus Rock1-3]
 gi|228666158|gb|EEL21622.1| hypothetical protein bcere0017_35380 [Bacillus cereus Rock1-3]
 gi|228679034|gb|EEL33242.1| hypothetical protein bcere0019_34840 [Bacillus cereus Rock3-28]
 gi|228685139|gb|EEL39070.1| hypothetical protein bcere0020_34750 [Bacillus cereus Rock3-29]
          Length = 509

 Score =  469 bits (1207), Expect = e-130,   Method: Composition-based stats.
 Identities = 182/450 (40%), Positives = 269/450 (59%), Gaps = 15/450 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
             ++F++++YGCQMN +D+  M  +F + GYE   S +DAD+++LNTC IRE A  KV+ 
Sbjct: 64  AGRKFYIRTYGCQMNEHDTEVMAGIFTTLGYEPTFSTEDADVVLLNTCAIRENAENKVFG 123

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELL 140
            LG +++LK    +   DLL+ V GC++Q E    +I++++  V++V G    +RLP +L
Sbjct: 124 ELGHLKSLK----RRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYIL 179

Query: 141 ERARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           + A F K  V   +S E D  E L  V     R+  + A++ I  GCDKFCT+C+VPYTR
Sbjct: 180 KDAMFSKETVVEVWSKEGDVIENLPKV-----RRGDIKAWVNIMYGCDKFCTYCIVPYTR 234

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G E SR    ++ E R L  NG  EITLLGQNVNA  GK  +  +    DL+  L ++  
Sbjct: 235 GKERSRRPEDIIQEIRHLAANGYKEITLLGQNVNA-YGKDFEDLEYGLGDLMDELRKVD- 292

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           + R+R+TTSHPRD  D LI+  G    L+ ++HLPVQSGS  +LK M R+++   Y +++
Sbjct: 293 IARIRFTTSHPRDFDDHLIEVLGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELV 352

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            +I+   P   +++D IVGFP ETD+ F  TM L  ++G+  AF+F YSPR GTP + M 
Sbjct: 353 RKIKETIPSAVLTTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMK 412

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSV 438
           + V   VK ERL  L   +    V  N+   GQ++EVL++   K   + L G +   + V
Sbjct: 413 DNVPMEVKKERLQRLNTLVNGLAVEKNNRYKGQVVEVLVDGESKNNPEVLAGYTRTNKLV 472

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468
              +    IG ++KV+IT+ K  +L GELV
Sbjct: 473 NFVASKSLIGQLVKVKITEAKTWSLNGELV 502


>gi|163857967|ref|YP_001632265.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bordetella
           petrii DSM 12804]
 gi|163261695|emb|CAP43997.1| conserved hypothetical protein [Bordetella petrii]
          Length = 514

 Score =  469 bits (1206), Expect = e-130,   Method: Composition-based stats.
 Identities = 198/447 (44%), Positives = 290/447 (64%), Gaps = 13/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ +++++GCQMN YDS +M D+    QG E  ++ +DAD+I+ NTC +REKA EKV+S 
Sbjct: 66  RKLYIRTFGCQMNEYDSDKMADVLRGDQGLELTDNPEDADVILFNTCSVREKAQEKVFSD 125

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR+++LK    K   DL++ V GCVA  EGE I++R+P V+VV GPQT +RLPEL+ R 
Sbjct: 126 LGRVQHLK----KLNPDLVIGVGGCVASQEGEAIVKRAPYVDVVFGPQTLHRLPELIRRR 181

Query: 144 RF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           R  G   VD  +   +KF+ L        R  G TAF++I EGC K+C+FCVVPYTRG E
Sbjct: 182 RASGASQVDISFPEIEKFDALPP-----PRIEGATAFVSIMEGCSKYCSFCVVPYTRGEE 236

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLV 261
           +SR    V+ E   L D GV E+TLLGQNVNA+RG   D GE   F+ LL  + EI G+ 
Sbjct: 237 VSRPFDDVLVEVADLADQGVKEVTLLGQNVNAYRGPMGDTGEIADFATLLEYVHEIPGIE 296

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+RYTTSHP++M+  ++ A+ +L  L+ +LHLPVQ+GSDR+L +M R +T  E++ ++ R
Sbjct: 297 RIRYTTSHPKEMTQRMVDAYANLPKLVSFLHLPVQAGSDRVLAAMKRGYTTLEFKSVVRR 356

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R+ RP + +SSDFIVGFPGET++DF  TM L++ +G+  +FSF YS R GTP +++++ 
Sbjct: 357 LRAARPGLTLSSDFIVGFPGETEEDFDKTMKLIEDVGFDTSFSFIYSRRPGTPAADLVDD 416

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVL 440
             + VK  RL  LQ  +  Q  +   A VG    +L+E    ++  +L+GR+   + V  
Sbjct: 417 TPQEVKLRRLQQLQALINAQAAAIAQAMVGTRQRLLVEGPSRRDPNELMGRTENNRIVNF 476

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGEL 467
            +    IG ++ V ITD   ++L   +
Sbjct: 477 PAPARLIGQMVDVIITDAYPNSLRARV 503


>gi|294085157|ref|YP_003551917.1| 2-methylthioadenine synthetase [Candidatus Puniceispirillum marinum
           IMCC1322]
 gi|292664732|gb|ADE39833.1| 2-methylthioadenine synthetase [Candidatus Puniceispirillum marinum
           IMCC1322]
          Length = 451

 Score =  469 bits (1206), Expect = e-130,   Method: Composition-based stats.
 Identities = 236/448 (52%), Positives = 312/448 (69%), Gaps = 7/448 (1%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + ++ F+K+YGCQMNVYDS RM D+    GY  + + D AD+++LNTCHIREKA+EKV+S
Sbjct: 1   MTKKLFIKTYGCQMNVYDSDRMTDVLAPLGYAPIETPDGADMVILNTCHIREKASEKVFS 60

Query: 83  FLGRIRNLKNSRI-KEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
            LGR+R +K     ++G  + + VAGCVAQAEG EI RR+P V++VVGPQTY+RLPEL+ 
Sbjct: 61  ELGRLRMMKEKARDQQGRAVTIAVAGCVAQAEGAEITRRAPWVDIVVGPQTYHRLPELIA 120

Query: 142 RARFG--KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
                  KR +DTD+  E KF+ L       +  RG  AFL++QEGCDKFC FCVVPYTR
Sbjct: 121 EIDPSVRKRAIDTDFPQEVKFDLLP----EEHAPRGPAAFLSVQEGCDKFCAFCVVPYTR 176

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G E SR  + V+ EA +L+  G  EITLLGQNVNA+ G    G   +   L+++L+EI G
Sbjct: 177 GAEYSRPAADVLAEATRLVGRGTREITLLGQNVNAYHGDDGHGSVWSLGRLIHALAEIDG 236

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           L R+RYTTSHP DM D LI AHG++  LMPYLHLP+QSGSDR+L +MNRRH+   Y ++I
Sbjct: 237 LERIRYTTSHPLDMDDELIAAHGNVPQLMPYLHLPIQSGSDRVLDAMNRRHSKDVYFKVI 296

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
           D++R VRPDIA+S DFIVGFPGE+D DF  T+ L+DK+GYA A+SFKYSPR GTP S   
Sbjct: 297 DKLRHVRPDIAMSGDFIVGFPGESDQDFADTLALIDKVGYASAYSFKYSPRPGTPASVSD 356

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV 439
            QV E VKA+RL  LQ+ L  QQ +FN    G  +++L+E+ G   G++ GRSP++Q+V 
Sbjct: 357 LQVPEAVKADRLEALQQLLNAQQFAFNKKTEGMRLDILVERAGGRAGQMAGRSPFMQAVN 416

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGEL 467
                  IG II   I + + +++  E+
Sbjct: 417 FAGSEDQIGQIIACDIIEGRQNSVTAEI 444


>gi|239813975|ref|YP_002942885.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Variovorax
           paradoxus S110]
 gi|239800552|gb|ACS17619.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Variovorax paradoxus
           S110]
          Length = 454

 Score =  469 bits (1206), Expect = e-130,   Method: Composition-based stats.
 Identities = 201/451 (44%), Positives = 288/451 (63%), Gaps = 15/451 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++ F+K++GCQMN YDS +M D+   +QGYE   ++D+ADLI+ NTC +REKA EKV+
Sbjct: 1   MSKKVFIKTFGCQMNEYDSDKMADVLHAAQGYEPTQNVDEADLILFNTCSVREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL- 140
           S LGR+++LK   +K      + V GCVA  EGE I+ R+P V++V GPQT +RLPE+L 
Sbjct: 61  SDLGRVKHLKAKGVK------IGVGGCVASQEGEAIIARAPYVDIVFGPQTLHRLPEMLN 114

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           +R R  +  VD  +   +KF+ L        R  G TAF++I EGC K+C++CVVPYTRG
Sbjct: 115 DRERLDRPQVDISFPEIEKFDHLPPA-----RVDGATAFVSIMEGCSKYCSYCVVPYTRG 169

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG-EKCTFSDLLYSLSEIKG 259
            E++R L  V+ E   L D GV E+TLLGQNVNA+RG+  D  E   F+ L+  ++EI G
Sbjct: 170 EEVNRPLDDVLVEIAGLADQGVREVTLLGQNVNAYRGRMGDTAEIADFALLIEYVAEIPG 229

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           + R+RYTTSHP + +  LI+A+  +  L+ +LHLPVQ GSDRIL +M R +TA EY+  +
Sbjct: 230 IERIRYTTSHPNEFTPRLIEAYAKVPQLVSHLHLPVQHGSDRILMAMKRGYTAMEYKSTV 289

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            ++R++RP++A+SSDFIVGFPGETD+DF   M L+D   +  +FSF +SPR GTP + + 
Sbjct: 290 RKLRAIRPELALSSDFIVGFPGETDEDFAKMMKLIDDCQFDNSFSFIFSPRPGTPAAALQ 349

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSV 438
           +     VK  RL  LQ+ +      F DA VG    VL+E   ++   +L+GR+   + V
Sbjct: 350 DDTPHAVKLARLQTLQRVIDGNVRRFGDALVGTTQCVLVEGASRKDANELMGRTACNRVV 409

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
                   +G +  +RIT     TL GE+  
Sbjct: 410 NFEGDARLVGQMADLRITRSLAYTLRGEVAT 440


>gi|229031402|ref|ZP_04187403.1| hypothetical protein bcere0028_34560 [Bacillus cereus AH1271]
 gi|228729897|gb|EEL80876.1| hypothetical protein bcere0028_34560 [Bacillus cereus AH1271]
          Length = 509

 Score =  469 bits (1206), Expect = e-130,   Method: Composition-based stats.
 Identities = 180/450 (40%), Positives = 269/450 (59%), Gaps = 15/450 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
             ++F++++YGCQMN +D+  M  +F + GYE   S +DAD+++LNTC IRE A  KV+ 
Sbjct: 64  TGRKFYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFG 123

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELL 140
            LG +++LK    +   DLL+ V GC++Q E    +I++++  V++V G    +RLP +L
Sbjct: 124 ELGHLKSLK----RRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYIL 179

Query: 141 ERARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           + A F K  V   +S E D  E L  V     R+  + A++ I  GCDKFCT+C+VPYTR
Sbjct: 180 KDAMFSKETVVEVWSKEGDVIENLPKV-----RRGDIKAWVNIMYGCDKFCTYCIVPYTR 234

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G E SR    ++ E R L  NG  EITLLGQNVNA  GK  +  +    DL+  L ++  
Sbjct: 235 GKERSRRPEDIIQEIRHLAANGYKEITLLGQNVNA-YGKDFEDFEYGLGDLMDELRKVD- 292

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           + R+R+TTSHPRD  D LI+  G    L+ ++HLPVQSGS  +LK M R+++   Y +++
Sbjct: 293 IARIRFTTSHPRDFDDHLIEVLGKGGNLVEHIHLPVQSGSTEMLKIMARKYSREHYLELV 352

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            +I+   P+   ++D IVGFP ET++ F  TM L  ++G+  AF+F YSPR GTP + M 
Sbjct: 353 RKIKEAIPNAVFTTDIIVGFPNETNEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMK 412

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSV 438
           + V   VK ERL  L   +    +  N+   GQI+EVL++   K   + L G +   + V
Sbjct: 413 DNVPMEVKKERLQRLNTLVNTLAIEKNNRYKGQIVEVLVDGESKNNPEVLAGYTRTNKLV 472

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468
              +    IG ++KV++T+ K  +L GELV
Sbjct: 473 NFVASKSLIGQLVKVKVTEAKTWSLNGELV 502


>gi|303256206|ref|ZP_07342222.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Burkholderiales bacterium
           1_1_47]
 gi|302860935|gb|EFL84010.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Burkholderiales bacterium
           1_1_47]
          Length = 441

 Score =  469 bits (1206), Expect = e-130,   Method: Composition-based stats.
 Identities = 200/447 (44%), Positives = 289/447 (64%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDS-LRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ ++K++GCQMN YDS    +    + GYE  + +++ADL+V NTC IREKA EKV+S 
Sbjct: 4   KKIYLKTFGCQMNEYDSGKIADIAKAAAGYEVTDDINEADLVVFNTCSIREKAQEKVFSD 63

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR+R LK    K   +L + V GCVA  EG  I+RR+P V+VV GPQT +RLPELLE+ 
Sbjct: 64  LGRVRELK----KTKPNLKIAVGGCVASQEGGNIVRRAPYVDVVFGPQTLHRLPELLEKN 119

Query: 144 RFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
               R  VD  +   +KF+ L             TAF++I EGC K+C++CVVPYTRG E
Sbjct: 120 EKEHRPQVDISFPEIEKFDHLPT-----PHADAATAFVSIMEGCSKYCSYCVVPYTRGEE 174

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR +  V+ E  +L   GV E+TLLGQNVNA+RG+G DGE   F+ LL  ++EI G+ R
Sbjct: 175 FSRPVEDVLVEIAQLAAQGVKEVTLLGQNVNAYRGEGPDGEIVDFALLLEYVAEIDGIER 234

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +RYTTSHP++ ++ LI+A+  + +L  ++HLPVQ+GSDR+L  M R +T  EY+ II ++
Sbjct: 235 IRYTTSHPKEFTNRLIEAYRKIPILANHVHLPVQAGSDRVLAGMKRGYTILEYKSIIRKL 294

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R++RPDI+I++DFIVGFP ET++DF  TM+L+ +I +  +FSF YS R GTP + + +  
Sbjct: 295 RAIRPDISIATDFIVGFPNETEEDFEKTMNLIKEIKFDASFSFVYSKRPGTPAAELPDDT 354

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRSPWLQSVVLN 441
            ++VK ERL  LQ    +     + + VG +   L+    K+ +GKL  R+   + V  N
Sbjct: 355 PQSVKLERLQRLQALNTQHAQEISQSMVGSVQRCLVVGEAKKGEGKLSARTDNNRIVTFN 414

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
              + IG ++ ++I +V   TL GELV
Sbjct: 415 GPENLIGQMVNLKINEVYPHTLGGELV 441


>gi|330504998|ref|YP_004381867.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Pseudomonas
           mendocina NK-01]
 gi|328919284|gb|AEB60115.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Pseudomonas
           mendocina NK-01]
          Length = 459

 Score =  469 bits (1206), Expect = e-130,   Method: Composition-based stats.
 Identities = 204/456 (44%), Positives = 287/456 (62%), Gaps = 13/456 (2%)

Query: 17  IVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREK 75
                 + ++ +++++GCQMN YDS RM D+    Q  E     ++AD+I+LNTC IREK
Sbjct: 7   TTSDSAMTKKLYIETHGCQMNEYDSSRMVDLLGEHQALEVTEKPEEADVILLNTCSIREK 66

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135
           A +KV+S LGR R LK +      DL++ V GCVA  EG  I  R+P V+VV GPQT +R
Sbjct: 67  AQDKVFSQLGRWRELKQA----NPDLVIGVGGCVASQEGAAIRDRAPYVDVVFGPQTLHR 122

Query: 136 LPELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCV 194
           LPE+++ AR  K   VD  +   +KF+RL        R  G +AF+++ EGC K+CTFCV
Sbjct: 123 LPEMIDAARVTKTAQVDISFPEIEKFDRLP-----EPRVDGPSAFVSVMEGCSKYCTFCV 177

Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL 254
           VPYTRG E+SR L  V+ E   L + GV E+TLLGQNVN +RG+  DG    F++LL+++
Sbjct: 178 VPYTRGEEVSRPLVDVLMEITSLTEKGVKEVTLLGQNVNGYRGEAPDGHIADFAELLHAV 237

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
           + + G+ R+RYTTSHP + SD +I AH ++  L+ YLHLPVQSGSDRIL +M R HTA E
Sbjct: 238 AALDGVERIRYTTSHPLEFSDAIIAAHAEIPQLVKYLHLPVQSGSDRILAAMKRNHTALE 297

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
           Y+  I ++R+  PDI ISSDFIVGFPGET+ DF  TM L++ +G+  +FSF YS R GTP
Sbjct: 298 YKSRIRKLRAAVPDILISSDFIVGFPGETEKDFEQTMKLIEDVGFDFSFSFIYSSRPGTP 357

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSP 433
            +++++   E VK +RL  LQ ++ +     +   VG +  +L+  +  K+ G L GR+ 
Sbjct: 358 AADLVDDTPEEVKKQRLALLQHRINQNGFENSRRMVGTVQRILVSDYSKKDPGMLQGRTE 417

Query: 434 WLQSVVLNSKNH-NIGDIIKVRITDVKISTLYGELV 468
             + V     N   IG  + V I D    +L G L+
Sbjct: 418 QNRIVNFRCDNPRLIGQFVDVHIDDALPHSLRGTLL 453


>gi|331001262|ref|ZP_08324888.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Parasutterella
           excrementihominis YIT 11859]
 gi|329568989|gb|EGG50785.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Parasutterella
           excrementihominis YIT 11859]
          Length = 441

 Score =  469 bits (1206), Expect = e-130,   Method: Composition-based stats.
 Identities = 201/447 (44%), Positives = 290/447 (64%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDS-LRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ ++K++GCQMN YDS    +    + GYE  + +++ADL+V NTC IREKA EKV+S 
Sbjct: 4   KKIYLKTFGCQMNEYDSGKIADIAKAAAGYEVTDDINEADLVVFNTCSIREKAQEKVFSD 63

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR+R LK    K   +L + V GCVA  EG  I+RR+P V+VV GPQT +RLPELLE+ 
Sbjct: 64  LGRVRELK----KTKPNLKIAVGGCVASQEGGNIVRRAPYVDVVFGPQTLHRLPELLEKN 119

Query: 144 RFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
               R  VD  +   +KF+RL             TAF++I EGC K+C++CVVPYTRG E
Sbjct: 120 EKEHRPQVDISFPEIEKFDRLPT-----PHADAATAFVSIMEGCSKYCSYCVVPYTRGEE 174

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR +  V+ E  +L   GV E+TLLGQNVNA+RG+G DGE   F+ LL  ++EI G+ R
Sbjct: 175 FSRPVEDVLVEIAQLAAQGVKEVTLLGQNVNAYRGEGPDGEIVDFALLLEYVAEIDGIER 234

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +RYTTSHP++ ++ LI+A+  + +L  ++HLPVQ+GSDR+L  M R +T  EY+ II ++
Sbjct: 235 IRYTTSHPKEFTNRLIEAYRKIPILANHVHLPVQAGSDRVLAGMKRGYTILEYKSIIRKL 294

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R++RPDI+I++DFIVGFP ET++DF  TM+L+ +I +  +FSF YS R GTP + + +  
Sbjct: 295 RAIRPDISIATDFIVGFPNETEEDFEKTMNLIKEIKFDASFSFVYSKRPGTPAAELPDDT 354

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRSPWLQSVVLN 441
            ++VK ERL  LQ    +     + + VG +   L+    K+ +GKL  R+   + V  N
Sbjct: 355 PQSVKLERLQRLQALNTQHAQEISQSMVGSVQRCLVVGEAKKGEGKLSARTDNNRIVTFN 414

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
              + IG ++ ++I +V   TL GELV
Sbjct: 415 GPENLIGQMVNLKINEVYPHTLGGELV 441


>gi|294788156|ref|ZP_06753399.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Simonsiella muelleri ATCC
           29453]
 gi|294483587|gb|EFG31271.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Simonsiella muelleri ATCC
           29453]
          Length = 441

 Score =  469 bits (1206), Expect = e-130,   Method: Composition-based stats.
 Identities = 198/448 (44%), Positives = 287/448 (64%), Gaps = 13/448 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQ--GYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           ++ F++++GCQMN YDS +M  +   +    E++N  D AD+I+ NTC +REKA EKV+S
Sbjct: 2   KKVFIRTFGCQMNEYDSEKMLAVLAEEHGDIEQINEPDGADIILFNTCSVREKAQEKVFS 61

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-E 141
            LGR+++LK    KE  +L++ VAGCVA  EGE I+ R+P V+VV GPQT +RLP+++ +
Sbjct: 62  DLGRVKHLK----KENPNLIIGVAGCVASQEGEAIIERAPYVDVVFGPQTLHRLPKMIMD 117

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           +   G   VD  +   +KF+ L        R  G +AF++I EGC K+C+FCVVPYTRG 
Sbjct: 118 KETTGLSQVDISFPEIEKFDHLPPA-----RVEGGSAFISIMEGCSKYCSFCVVPYTRGE 172

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR L+ V+ E   L   GV EI LLGQNVNA+RG+  +GE C F+ LL  + EI G+ 
Sbjct: 173 EFSRPLNDVLTEIAHLAQQGVKEINLLGQNVNAYRGEMDNGEICDFATLLRIVHEIPGIE 232

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHPR+ SD +I+ + DL  L+ +LHLP+QSGSDR+L +M R +TA EY+ II +
Sbjct: 233 RMRFTTSHPREFSDAIIECYRDLPKLVSHLHLPIQSGSDRVLSAMKRGYTALEYKSIIRK 292

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R++RPD+ +SSDFIVGFPGET+ +F  T+ LV  I +  +F F YSPR GTP +N+ + 
Sbjct: 293 LRAIRPDLCLSSDFIVGFPGETEREFEQTLKLVKDIAFDLSFVFIYSPRPGTPAANLPDD 352

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVL 440
                K  RL  L + +  +    N A +G I   L+E    K+  +L  R+   + V  
Sbjct: 353 TPHEEKVRRLEALNEVIEAETARINQAMLGTIQRCLVEGVSKKDPDQLQARTANNRVVNF 412

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 I  ++++ IT+ +  +L GELV
Sbjct: 413 YGSADLINQMVELEITEARTFSLSGELV 440


>gi|30263778|ref|NP_846155.1| hypothetical protein BA_3908 [Bacillus anthracis str. Ames]
 gi|47529199|ref|YP_020548.1| hypothetical protein GBAA_3908 [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49186622|ref|YP_029874.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
           anthracis str. Sterne]
 gi|165872391|ref|ZP_02217026.1| conserved hypothetical protein [Bacillus anthracis str. A0488]
 gi|167635860|ref|ZP_02394169.1| conserved hypothetical protein [Bacillus anthracis str. A0442]
 gi|167639855|ref|ZP_02398124.1| conserved hypothetical protein [Bacillus anthracis str. A0193]
 gi|170687836|ref|ZP_02879050.1| conserved hypothetical protein [Bacillus anthracis str. A0465]
 gi|170706889|ref|ZP_02897347.1| conserved hypothetical protein [Bacillus anthracis str. A0389]
 gi|177652051|ref|ZP_02934597.1| conserved hypothetical protein [Bacillus anthracis str. A0174]
 gi|190568422|ref|ZP_03021329.1| conserved hypothetical protein [Bacillus anthracis Tsiankovskii-I]
 gi|227813320|ref|YP_002813329.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus anthracis str.
           CDC 684]
 gi|229602893|ref|YP_002868014.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus anthracis str.
           A0248]
 gi|254683519|ref|ZP_05147379.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus anthracis str.
           CNEVA-9066]
 gi|254722040|ref|ZP_05183829.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus anthracis str.
           A1055]
 gi|254735812|ref|ZP_05193518.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus anthracis str.
           Western North America USA6153]
 gi|254739662|ref|ZP_05197356.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus anthracis str.
           Kruger B]
 gi|254751058|ref|ZP_05203097.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus anthracis str.
           Vollum]
 gi|254759376|ref|ZP_05211401.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus anthracis str.
           Australia 94]
 gi|81583703|sp|Q81WR0|MIAB_BACAN RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|30258422|gb|AAP27641.1| conserved hypothetical protein [Bacillus anthracis str. Ames]
 gi|47504347|gb|AAT33023.1| conserved hypothetical protein [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49180549|gb|AAT55925.1| conserved hypothetical protein [Bacillus anthracis str. Sterne]
 gi|164711829|gb|EDR17371.1| conserved hypothetical protein [Bacillus anthracis str. A0488]
 gi|167512256|gb|EDR87633.1| conserved hypothetical protein [Bacillus anthracis str. A0193]
 gi|167528817|gb|EDR91575.1| conserved hypothetical protein [Bacillus anthracis str. A0442]
 gi|170128307|gb|EDS97176.1| conserved hypothetical protein [Bacillus anthracis str. A0389]
 gi|170668152|gb|EDT18901.1| conserved hypothetical protein [Bacillus anthracis str. A0465]
 gi|172082420|gb|EDT67485.1| conserved hypothetical protein [Bacillus anthracis str. A0174]
 gi|190560426|gb|EDV14404.1| conserved hypothetical protein [Bacillus anthracis Tsiankovskii-I]
 gi|227004716|gb|ACP14459.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus anthracis str.
           CDC 684]
 gi|229267301|gb|ACQ48938.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus anthracis str.
           A0248]
          Length = 509

 Score =  469 bits (1206), Expect = e-130,   Method: Composition-based stats.
 Identities = 182/450 (40%), Positives = 271/450 (60%), Gaps = 15/450 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
             ++F++++YGCQMN +D+  M  +F + GYE   S +DAD+++LNTC IRE A  KV+ 
Sbjct: 64  TGRKFYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFG 123

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELL 140
            LG +++LK    +   DLL+ V GC++Q E    +I++++  V++V G    +RLP +L
Sbjct: 124 ELGHLKSLK----RRNSDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYIL 179

Query: 141 ERARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           + A F K  V   +S E D  E L  V     R+  + A++ I  GCDKFCT+C+VPYTR
Sbjct: 180 KDAMFSKETVVEVWSKEGDVIENLPKV-----RRGDIKAWVNIMYGCDKFCTYCIVPYTR 234

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G E SR    ++ E R L  NG  EITLLGQNVNA  GK  +  +    DL+  L ++  
Sbjct: 235 GKERSRRPEDIIQEIRHLAANGYKEITLLGQNVNA-YGKDFEDIEYGLGDLMDELRKVD- 292

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           + R+R+TTSHPRD  D LI+  G    L+ ++HLPVQSGS  +LK M R+++   Y +++
Sbjct: 293 IARIRFTTSHPRDFDDHLIEVLGKGGNLVEHIHLPVQSGSTEMLKIMARKYSREHYLELV 352

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            +I+   P+  +++D IVGFP ETD+ F  TM L  ++G+  AF+F YSPR GTP + M 
Sbjct: 353 RKIKEAIPNAVLTTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMK 412

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSV 438
           + V   VK ERL  L   + +  +  ND   GQI+EVL++   K   + L G +   + V
Sbjct: 413 DNVPMEVKKERLQRLNALVNKLAIEKNDRYKGQIVEVLVDGESKNNPEVLAGYTRTNKLV 472

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468
              +    IG ++K+++TD K  +L GELV
Sbjct: 473 NFVAPKSLIGQLVKIKVTDAKTWSLNGELV 502


>gi|192361583|ref|YP_001982120.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Cellvibrio
           japonicus Ueda107]
 gi|229890473|sp|B3PER6|MIAB_CELJU RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|190687748|gb|ACE85426.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Cellvibrio japonicus
           Ueda107]
          Length = 456

 Score =  469 bits (1206), Expect = e-130,   Method: Composition-based stats.
 Identities = 194/457 (42%), Positives = 286/457 (62%), Gaps = 14/457 (3%)

Query: 18  VDQCIVP-QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREK 75
           +     P ++ ++K++GCQMN YDS RM D+   S       + ++AD+I++NTC IREK
Sbjct: 1   MSATQTPTKKLYIKTHGCQMNEYDSNRMRDLLGESHNMVATENPEEADVILINTCSIREK 60

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135
           A EK++  LGR +NLK    K+  +L++ V GCVA  EG  I  R+P V+++ GPQT +R
Sbjct: 61  AQEKLFHELGRWKNLK----KQNPELIIGVGGCVASQEGAAIAERAPYVDLIFGPQTLHR 116

Query: 136 LPELLE-RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCV 194
           LPE++E +   G  VVD  +   +KF++L   D       GV+AF++I EGC K+CTFCV
Sbjct: 117 LPEMMETKKSNGVVVVDISFPEIEKFDKLPQPD-----ADGVSAFVSIMEGCSKYCTFCV 171

Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL 254
           VPYTRG E+SR ++ V+ E   L   GV E+ LLGQNVNA+RG   DG     ++L+  +
Sbjct: 172 VPYTRGEEVSRPVADVMAEVIHLAKQGVREVNLLGQNVNAYRGAAADGTIVDLAELITYI 231

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
           + + G+ R+R+TTSHP + +D LI+ +  +  L+ +LHLPVQSGSDRIL +M R HT  E
Sbjct: 232 AAVDGIDRIRFTTSHPVEFTDALIEVYNQVPELVSHLHLPVQSGSDRILMAMKRGHTVLE 291

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
           Y+  + RI+  RP+I+ SSDFI+GFPGETD DF ATM L+  + +  +FSF YSPR GTP
Sbjct: 292 YKSKLRRIKKNRPNISFSSDFIIGFPGETDADFEATMKLIHDMEFDTSFSFIYSPRPGTP 351

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSP 433
            +++ +   E VK +RL  LQ ++ +Q ++ +   VG    +L+  +  K+ G+L GR+ 
Sbjct: 352 AADLPDDTPEEVKKQRLAILQDRITQQAMAISRRMVGNTERILVSGYSKKDPGQLSGRTE 411

Query: 434 WLQSVVLNSKN-HNIGDIIKVRITDVKISTLYGELVV 469
             + V     N   IG    V I +   ++L G L+ 
Sbjct: 412 NNRVVNFRCDNPALIGKFADVLIEEALPNSLRGSLIA 448


>gi|330976853|gb|EGH76884.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Pseudomonas
           syringae pv. aptata str. DSM 50252]
          Length = 442

 Score =  468 bits (1205), Expect = e-130,   Method: Composition-based stats.
 Identities = 199/450 (44%), Positives = 283/450 (62%), Gaps = 13/450 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++ +++++GCQMN YDS RM D+    Q  E     +DAD+I+LNTC IRE A ++VY
Sbjct: 1   MAKKLYIETHGCQMNEYDSSRMVDLLGEHQALEVTARAEDADVILLNTCSIREPAQDRVY 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S LGR R LK +      ++++ V GCVA  EG  I  R+P V+VV GPQT +RLPE+++
Sbjct: 61  SQLGRWRELKLA----NPEMVIAVGGCVASQEGAAIRDRAPYVDVVFGPQTLHRLPEMID 116

Query: 142 RARFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
            AR  +   VD  +   +KF+ L        R  G +A++++ EGC K+CTFCVVPYTRG
Sbjct: 117 AARVTRLPQVDVSFPEIEKFDHLP-----EPRVDGPSAYVSVMEGCSKYCTFCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR    V+ E   L +NGV E+TLLGQNVN +RG   DG     +DL+  ++ + G+
Sbjct: 172 EEVSRPFDDVLSEVIHLAENGVREVTLLGQNVNGYRGTTHDGRVADLADLIRVVAAVDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+RYTTSHP + SD LI+AH ++  L+ +LHLPVQSGSDRIL +M R HT  EY+  + 
Sbjct: 232 DRIRYTTSHPLEFSDSLIQAHAEVPELVKHLHLPVQSGSDRILAAMKRNHTTLEYKSRLR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R+  P I+ISSDFIVGFPGET+ DF  TM L++ +G+  +FSF YSPR GTP +++ +
Sbjct: 292 KLRAAVPGISISSDFIVGFPGETEKDFDNTMKLIEDVGFDFSFSFVYSPRPGTPAADLKD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVV 439
              E +K ERL  LQ +L +Q    +   VG I  +L+  +  K+ G+L GR+   + V 
Sbjct: 352 DTPEALKKERLAALQHRLNQQGFEISRQMVGSIQRILVTDYSKKDPGELQGRTENNRIVN 411

Query: 440 LNSKNH-NIGDIIKVRITDVKISTLYGELV 468
               N   IG    V I D +  +L G L+
Sbjct: 412 FRCDNPKLIGQFADVHIDDAQPHSLRGSLL 441


>gi|94676510|ref|YP_588543.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Baumannia cicadellinicola
           str. Hc (Homalodisca coagulata)]
 gi|229890429|sp|Q1LU21|MIAB_BAUCH RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|94219660|gb|ABF13819.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Baumannia cicadellinicola
           str. Hc (Homalodisca coagulata)]
          Length = 451

 Score =  468 bits (1205), Expect = e-130,   Method: Composition-based stats.
 Identities = 198/446 (44%), Positives = 288/446 (64%), Gaps = 12/446 (2%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +  +K+YGCQMN YDS ++ D+  +   Y+  +  ++AD+++LNTC IREKA EK++  L
Sbjct: 4   KLHIKTYGCQMNQYDSSKIVDLLKNTHKYQLTDIAEEADILLLNTCSIREKAQEKLFHQL 63

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR R LK    K   +L++ V GCVA  EG  I  R+  V+++ GPQT +RLPE++   R
Sbjct: 64  GRWRRLK----KINPNLIIGVGGCVASQEGSNIRERANYVDIIFGPQTLHRLPEMINHVR 119

Query: 145 FGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             +  V+D  +   +KF+ +        + +G TAF++I EGCDK+C++CVVPYTRGIE+
Sbjct: 120 ITRSPVIDISFPEIEKFDCMP-----KPQAKGPTAFVSIIEGCDKYCSYCVVPYTRGIEV 174

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR    ++ E   L D  V EI LLGQNVNA+RG    G  CTF++LL  ++ I G+ R+
Sbjct: 175 SRPCEDILLEINNLADQNVREIHLLGQNVNAYRGTRYGGGTCTFAELLRLVAAINGIDRI 234

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+TTSHP + +D LI  + D   L+ ++HLPVQSGSDRIL  M R HT  EY+ II ++ 
Sbjct: 235 RFTTSHPIEFTDDLIDVYRDTPELVSFVHLPVQSGSDRILALMKRGHTVLEYKSIIRKLY 294

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           +VRP I ISSDFIVGFPGET++DFR TM+L+ ++ +  +FSF YSPR GTP +NM++ V 
Sbjct: 295 AVRPSIQISSDFIVGFPGETEEDFRQTMNLISEVNFDMSFSFIYSPRPGTPAANMVDIVS 354

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNS 442
           ++ K +RL  LQ+ +R+Q + F+ A  G +  +L+E   ++    L GR+   + V    
Sbjct: 355 QDEKKQRLYILQECIRKQAMKFSQAMKGTVQCILVEGTSRKNIMHLSGRTENNRVVNFIG 414

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
            N  IG  + V I DV  ++L GEL+
Sbjct: 415 NNGMIGQFVNVEIIDVYSNSLRGELI 440


>gi|58040437|ref|YP_192401.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Gluconobacter
           oxydans 621H]
 gi|58002851|gb|AAW61745.1| MiaB protein [Gluconobacter oxydans 621H]
          Length = 441

 Score =  468 bits (1205), Expect = e-130,   Method: Composition-based stats.
 Identities = 237/435 (54%), Positives = 310/435 (71%), Gaps = 3/435 (0%)

Query: 36  MNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRI 95
           MNVYDS RM D+    GY  V   +DAD+++LNTCHIRE+A EKV+S LGR+R +++ R+
Sbjct: 1   MNVYDSARMADVLRPLGYGPVERPEDADMVILNTCHIRERATEKVFSELGRLRKIRDERM 60

Query: 96  KEGGDLLVV-VAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV-VDTD 153
             G D  ++ VAGCVAQAEGE IL R+P V++V+GPQTY++LPE++ RA       ++TD
Sbjct: 61  SNGADRTIIAVAGCVAQAEGEVILTRAPYVDLVLGPQTYHKLPEMVARAARAGGAVIETD 120

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           + VE KF+ L   D     +  +TAFLTIQEGCDKFC+FCVVPYTRG E SR ++ V+ E
Sbjct: 121 FPVEQKFDFLP-TDAAPQTQGNLTAFLTIQEGCDKFCSFCVVPYTRGAETSRPVASVLAE 179

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
           AR++ ++GV EITLLGQNVNA+ G    G   T + L+  L++I GL R+RY TSHPRD+
Sbjct: 180 ARRMAESGVREITLLGQNVNAYHGDDGKGGSETLAGLVEQLAQIPGLGRIRYMTSHPRDV 239

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
              LI AH D   LMP+LHLPVQSGSDRILK+MNR HTA EYR+ + ++R  RPD+A+SS
Sbjct: 240 DQSLIDAHRDNPALMPFLHLPVQSGSDRILKAMNRGHTADEYRESVRKLREARPDLALSS 299

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLC 393
           DFIVG PGET++DF ATM LV  IG+A A+SFKYSPR GTP +    QV E+VK  RL  
Sbjct: 300 DFIVGHPGETEEDFEATMQLVRDIGFAMAYSFKYSPRPGTPAAGQPMQVPEDVKDRRLAE 359

Query: 394 LQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKV 453
           LQ  LREQQ +FN   VG + E+L+   G++ G++ GRSP+LQ V  +  +H IG  +KV
Sbjct: 360 LQALLREQQDAFNADMVGTVQEILVTNRGRKPGQIAGRSPYLQPVHFDGPDHLIGSTVKV 419

Query: 454 RITDVKISTLYGELV 468
            IT  + ++L G L+
Sbjct: 420 AITTRRTNSLGGTLI 434


>gi|326796263|ref|YP_004314083.1| (dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Marinomonas mediterranea MMB-1]
 gi|326547027|gb|ADZ92247.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Marinomonas mediterranea MMB-1]
          Length = 450

 Score =  468 bits (1205), Expect = e-130,   Method: Composition-based stats.
 Identities = 189/448 (42%), Positives = 285/448 (63%), Gaps = 12/448 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++ F++++GCQMN YDS RM D+   S   E   + ++AD+++LNTC IREKA +KVY
Sbjct: 1   MAKKLFIQTHGCQMNEYDSSRMADLLGDSHEMEITENAEEADVLLLNTCSIREKAQDKVY 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR + LK        DL++ V GCVA  EG+ I +R+  V+++ GPQT ++LPE+++
Sbjct: 61  HQLGRWKKLKAK----NPDLVIGVGGCVASQEGDNIRKRAKHVDMIFGPQTLHKLPEMVD 116

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
            A     + D  +   +KF+ L        R  G  AF+++ EGC K+CTFCVVPYTRG 
Sbjct: 117 AAATHIPITDVTFPEIEKFDHLP-----APRVEGAEAFVSVMEGCSKYCTFCVVPYTRGE 171

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E+SR    V+ E  +L + GV EI LLGQNVNA+RG+  DG++   +D++++++ I+G+ 
Sbjct: 172 EVSRPYEDVLKEVAQLSEQGVREIHLLGQNVNAYRGETQDGDEADLADIIHAIARIEGVE 231

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHP + +D LI+A      L+ +LHLPVQSG++ +L +M R H    Y   I+R
Sbjct: 232 RIRFTTSHPVEFTDSLIEAFRTEPKLVSHLHLPVQSGANNVLSAMKRGHDRQYYIDKINR 291

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I+  RP I++SSDFI+GFPGETDDDF  TM+L+ +IG+  +FSF YS R GTP S++ + 
Sbjct: 292 IKDARPGISLSSDFIIGFPGETDDDFIDTMNLIQEIGFDHSFSFVYSQRPGTPASDLEDD 351

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVL 440
             E +K ERL  LQ+++ +Q    +   VG I  +L+  +  ++ G+L GR+   + V  
Sbjct: 352 TPEELKKERLAILQRRISQQAYDISLNMVGNIERILVSGYSPRDPGQLQGRTENNRIVNF 411

Query: 441 NSKNH-NIGDIIKVRITDVKISTLYGEL 467
            + +   IG    V ITD   ++L GEL
Sbjct: 412 RADDPKLIGKFADVVITDAYPNSLLGEL 439


>gi|115314702|ref|YP_763425.1| 2-methylthioadenine synthetase [Francisella tularensis subsp.
           holarctica OSU18]
 gi|156502304|ref|YP_001428369.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Francisella
           tularensis subsp. holarctica FTNF002-00]
 gi|254369234|ref|ZP_04985246.1| conserved hypothetical protein [Francisella tularensis subsp.
           holarctica FSC022]
 gi|122325275|sp|Q0BM96|MIAB_FRATO RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|229890539|sp|A7NBR0|MIAB_FRATF RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|115129601|gb|ABI82788.1| possible 2-methylthioadenine synthetase [Francisella tularensis
           subsp. holarctica OSU18]
 gi|156252907|gb|ABU61413.1| tRNA-I(6)A37 thiotransferase enzyme [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|157122184|gb|EDO66324.1| conserved hypothetical protein [Francisella tularensis subsp.
           holarctica FSC022]
          Length = 442

 Score =  468 bits (1205), Expect = e-130,   Method: Composition-based stats.
 Identities = 190/447 (42%), Positives = 277/447 (61%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYER-VNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ F+K+ GCQMN YDS RM ++          +   DAD+I++NTC IREKA EKV+  
Sbjct: 5   KKVFIKTLGCQMNEYDSARMHEVLNEHFDTVKTDDYKDADIILINTCSIREKAQEKVFHE 64

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK    K   DL++ V GCVA  EGE I++R+P V++V GPQT +RLPE++++ 
Sbjct: 65  LGRWKGLK----KTNEDLIIGVGGCVASQEGENIIKRAPFVDLVFGPQTIHRLPEMIKQK 120

Query: 144 RFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           +  ++  VD  +   +KF+ L        +  G  A+++I EGCDK+C++CVVPYTRG E
Sbjct: 121 QKSQQSQVDISFPEVEKFDYLP-----EPKAEGAKAYVSIMEGCDKYCSYCVVPYTRGPE 175

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           ++R    V+ E   L + GV EITLLGQNVN + G   +G+    + L++ ++EI G+ R
Sbjct: 176 VNRPFEDVLAECAILAEQGVKEITLLGQNVNHYLGPMENGQTADLALLIHFIAEIDGIER 235

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP + S  LI A+  +  L  +LHLPVQ GSDRIL +M R HT  E++Q I ++
Sbjct: 236 IRFTTSHPVEFSQNLIDAYATVPELANHLHLPVQHGSDRILINMKRNHTILEFKQKIRKL 295

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R++RPDI ISSDFIVGFPGET++DF+  +DLV +I + Q+FSF YS R GTP +++ +  
Sbjct: 296 RAIRPDITISSDFIVGFPGETEEDFQKLLDLVKEINFDQSFSFIYSKRPGTPAADLPDDT 355

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLN 441
              VK +RL  LQ  L       +   VG    +L++    K+   L GR+   + V   
Sbjct: 356 PMEVKKDRLKRLQDLLNSNAQIISRQMVGTNQRILVDGTSKKDDNILSGRTENNRVVNFK 415

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                IG    V+IT+   ++L GEL+
Sbjct: 416 GDKSLIGQFAMVKITESLPNSLRGELI 442


>gi|56707743|ref|YP_169639.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Francisella
           tularensis subsp. tularensis SCHU S4]
 gi|110670214|ref|YP_666771.1| hypothetical protein FTF0618c [Francisella tularensis subsp.
           tularensis FSC198]
 gi|118497654|ref|YP_898704.1| tRNA-methylthiotransferase MiaB protein [Francisella tularensis
           subsp. novicida U112]
 gi|134302074|ref|YP_001122043.1| tRNA-thiotransferase enzyme MiaB [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|187931466|ref|YP_001891450.1| tRNA-methylthiotransferase MiaB protein [Francisella tularensis
           subsp. mediasiatica FSC147]
 gi|194323626|ref|ZP_03057402.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Francisella tularensis
           subsp. novicida FTE]
 gi|208779715|ref|ZP_03247059.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Francisella novicida FTG]
 gi|224456814|ref|ZP_03665287.1| tRNA-methylthiotransferase MiaB protein [Francisella tularensis
           subsp. tularensis MA00-2987]
 gi|254370246|ref|ZP_04986252.1| hypothetical protein [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254373019|ref|ZP_04988508.1| hypothetical protein FTCG_00593 [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|254374469|ref|ZP_04989950.1| hypothetical protein FTDG_00638 [Francisella novicida GA99-3548]
 gi|254874556|ref|ZP_05247266.1| tRNA-methylthiotransferase miaB [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|81597746|sp|Q5NH53|MIAB_FRATT RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|123169487|sp|Q14IK5|MIAB_FRAT1 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|229890540|sp|B2SG13|MIAB_FRATM RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|229890541|sp|A0Q6T5|MIAB_FRATN RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|229890542|sp|A4IYC1|MIAB_FRATW RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|56604235|emb|CAG45251.1| conserved hypothetical protein yleA [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110320547|emb|CAL08634.1| conserved hypothetical protein yleA [Francisella tularensis subsp.
           tularensis FSC198]
 gi|118423560|gb|ABK89950.1| tRNA-methylthiotransferase MiaB protein [Francisella novicida U112]
 gi|134049851|gb|ABO46922.1| tRNA-thiotransferase enzyme MiaB [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|151568490|gb|EDN34144.1| hypothetical protein FTBG_01371 [Francisella tularensis subsp.
           tularensis FSC033]
 gi|151570746|gb|EDN36400.1| hypothetical protein FTCG_00593 [Francisella novicida GA99-3549]
 gi|151572188|gb|EDN37842.1| hypothetical protein FTDG_00638 [Francisella novicida GA99-3548]
 gi|187712375|gb|ACD30672.1| tRNA-methylthiotransferase MiaB protein [Francisella tularensis
           subsp. mediasiatica FSC147]
 gi|194321990|gb|EDX19472.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Francisella tularensis
           subsp. novicida FTE]
 gi|208744170|gb|EDZ90470.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Francisella novicida FTG]
 gi|254840555|gb|EET18991.1| tRNA-methylthiotransferase miaB [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|282158914|gb|ADA78305.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Francisella tularensis
           subsp. tularensis NE061598]
          Length = 442

 Score =  468 bits (1205), Expect = e-130,   Method: Composition-based stats.
 Identities = 190/447 (42%), Positives = 277/447 (61%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYER-VNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ F+K+ GCQMN YDS RM ++          +   DAD+I++NTC IREKA EKV+  
Sbjct: 5   KKVFIKTLGCQMNEYDSARMHEVLNEHFDTVKTDDYKDADIILINTCSIREKAQEKVFHE 64

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK    K   DL++ V GCVA  EGE I++R+P V++V GPQT +RLPE++++ 
Sbjct: 65  LGRWKGLK----KTNEDLIIGVGGCVASQEGENIIKRAPFVDLVFGPQTIHRLPEMIKQK 120

Query: 144 RFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           +  ++  VD  +   +KF+ L        +  G  A+++I EGCDK+C++CVVPYTRG E
Sbjct: 121 QKTQQSQVDISFPEVEKFDYLP-----EPKAEGAKAYVSIMEGCDKYCSYCVVPYTRGPE 175

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           ++R    V+ E   L + GV EITLLGQNVN + G   +G+    + L++ ++EI G+ R
Sbjct: 176 VNRPFEDVLAECAILAEQGVKEITLLGQNVNHYLGPMENGQTADLALLIHFIAEIDGIER 235

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP + S  LI A+  +  L  +LHLPVQ GSDRIL +M R HT  E++Q I ++
Sbjct: 236 IRFTTSHPVEFSQNLIDAYATVPELANHLHLPVQHGSDRILINMKRNHTILEFKQKIRKL 295

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R++RPDI ISSDFIVGFPGET++DF+  +DLV +I + Q+FSF YS R GTP +++ +  
Sbjct: 296 RAIRPDITISSDFIVGFPGETEEDFQKLLDLVKEINFDQSFSFIYSKRPGTPAADLPDDT 355

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLN 441
              VK +RL  LQ  L       +   VG    +L++    K+   L GR+   + V   
Sbjct: 356 PMEVKKDRLKRLQDLLNSNAQIISRQMVGTNQRILVDGTSKKDDNILSGRTENNRVVNFK 415

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                IG    V+IT+   ++L GEL+
Sbjct: 416 GDKSLIGQFAMVKITESLPNSLRGELI 442


>gi|255263805|ref|ZP_05343147.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Thalassiobium sp. R2A62]
 gi|255106140|gb|EET48814.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Thalassiobium sp. R2A62]
          Length = 436

 Score =  468 bits (1205), Expect = e-130,   Method: Composition-based stats.
 Identities = 240/445 (53%), Positives = 317/445 (71%), Gaps = 13/445 (2%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P++ F+K+YGCQMNVYDS RM +    QGY    + DDAD+I+LNTCHIREKAAEK+YS 
Sbjct: 4   PKKLFIKTYGCQMNVYDSERMAEALGGQGYVETKTPDDADMILLNTCHIREKAAEKIYSE 63

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR R  K++      DL + VAGCVAQAEGEEI+RR P+V++VVGPQ+Y+RLPE+ +  
Sbjct: 64  LGRYRGFKDA----KPDLKIGVAGCVAQAEGEEIMRRQPMVDLVVGPQSYHRLPEMEDAV 119

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             G++ +DTD+  EDKFE L          RG TAFLT+QEGCDKFC FCVVPYTRG E+
Sbjct: 120 SRGEKALDTDFPEEDKFEHLKSRP---KAARGATAFLTVQEGCDKFCAFCVVPYTRGAEL 176

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR   +++ EA+ L++ GV EITLLGQNVNA+      G +   + L++ L ++ GL R+
Sbjct: 177 SRPADRIIREAQDLVERGVREITLLGQNVNAYH-----GHEGGLAGLIWDLDKVDGLKRI 231

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+TTSHP DM   LI AHG  D LMPYLHLPVQSGSDRILK+MNR+HT  EY  +I+RIR
Sbjct: 232 RFTTSHPNDMDQALIDAHGTCDKLMPYLHLPVQSGSDRILKAMNRKHTREEYFALIERIR 291

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           + RPD+ +S DFIVGFPGETD DF  TMDLV ++ + QA+SFKYS R GTP +    Q+D
Sbjct: 292 AARPDLLLSGDFIVGFPGETDQDFEDTMDLVRRVNFGQAYSFKYSTRPGTPAAEKP-QMD 350

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
           + +  ERL  LQ+ L+EQQV+  +  VG+ + VL EK G+E G+L+G+S +L +V   + 
Sbjct: 351 DGLATERLHRLQELLKEQQVAAQEGMVGRDVRVLFEKKGREAGQLIGKSEYLHAVHAEAD 410

Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468
           +  IG + KV + + + ++L+  LV
Sbjct: 411 DAMIGTVQKVHVIEARTNSLHARLV 435


>gi|325133510|gb|EGC56173.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Neisseria meningitidis
           M13399]
          Length = 442

 Score =  468 bits (1205), Expect = e-130,   Method: Composition-based stats.
 Identities = 196/448 (43%), Positives = 281/448 (62%), Gaps = 13/448 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQ--GYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           ++ F++++GCQMN YDS +M  +   +  G E+V   D+AD+I+ NTC +REKA EKV+S
Sbjct: 2   KKVFIRTFGCQMNEYDSDKMLAVLAEEHGGIEQVTQADEADIILFNTCSVREKAQEKVFS 61

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-E 141
            LGR+R LK         L++ VAGCVA  EGE I++R+P V+VV GPQT +RLP+++ +
Sbjct: 62  DLGRVRPLKEK----NPGLIIGVAGCVASQEGENIIKRAPYVDVVFGPQTLHRLPKMIVD 117

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           +   G   VD  +   +KF+ L        R  G  AF++I EGC K+C+FCVVPYTRG 
Sbjct: 118 KETSGLSQVDISFPEIEKFDHLPPA-----RVEGGAAFVSIMEGCSKYCSFCVVPYTRGE 172

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR L+ V+ E   L   GV EI LLGQNVNA+RG+  DGE C F+ LL  + EI G+ 
Sbjct: 173 EFSRPLNDVLTEIANLAQQGVKEINLLGQNVNAYRGEMDDGEICDFATLLRIVHEIPGIE 232

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHPR+ +D +I+ + DL  L+ +LHLP+QSGSDR+L +M R +TA EY+ II +
Sbjct: 233 RMRFTTSHPREFTDSIIECYRDLPKLVSHLHLPIQSGSDRVLSAMKRGYTALEYKSIIRK 292

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R++RPD+ +SSDFIVGFPGET+ +F  T+ LV  I +  +F F YSPR GTP +N+ + 
Sbjct: 293 LRAIRPDLCLSSDFIVGFPGETEREFEQTLKLVKDIAFDLSFVFIYSPRPGTPAANLHDD 352

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVL 440
                K  RL  L + +  +    N   VG +   L+E    K+  +L  R+   + V  
Sbjct: 353 TPHEEKVRRLEALNEVIEAETARINQTMVGTVQRCLVEGISKKDPDQLQARTANNRVVNF 412

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 I  +I + IT+    +L G++V
Sbjct: 413 TGTPDMINQMIDLEITEAYTFSLRGKIV 440


>gi|125973301|ref|YP_001037211.1| RNA modification protein [Clostridium thermocellum ATCC 27405]
 gi|256003782|ref|ZP_05428770.1| RNA modification enzyme, MiaB family [Clostridium thermocellum DSM
           2360]
 gi|281417504|ref|ZP_06248524.1| RNA modification enzyme, MiaB family [Clostridium thermocellum
           JW20]
 gi|229890498|sp|A3DDI9|MIAB_CLOTH RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|125713526|gb|ABN52018.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Clostridium thermocellum
           ATCC 27405]
 gi|255992343|gb|EEU02437.1| RNA modification enzyme, MiaB family [Clostridium thermocellum DSM
           2360]
 gi|281408906|gb|EFB39164.1| RNA modification enzyme, MiaB family [Clostridium thermocellum
           JW20]
 gi|316940466|gb|ADU74500.1| RNA modification enzyme, MiaB family [Clostridium thermocellum DSM
           1313]
          Length = 480

 Score =  468 bits (1205), Expect = e-130,   Method: Composition-based stats.
 Identities = 173/449 (38%), Positives = 271/449 (60%), Gaps = 14/449 (3%)

Query: 24  PQRFF-VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
            ++ + + ++GCQMN +DS ++  M    GY   ++++++DL++ NTC +RE A  KVY 
Sbjct: 41  KKKLYCLNTFGCQMNEHDSEKLAGMLAEMGYAETDNVNESDLVIYNTCCVRENAELKVYG 100

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELL 140
            LG ++ LKN       DL++ V GC+ Q     E I +    V+++ G    Y+ PELL
Sbjct: 101 HLGMLKPLKNQ----KPDLVIAVCGCMMQQPEVVEHIKKTYSHVDLIFGTHNLYKFPELL 156

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
             A   +  V   +  + +      ++    RK GV A++T+  GC+ FCT+C+VPY RG
Sbjct: 157 YSAMDSQTTVVDVWDCDGQIAENVAIE----RKDGVKAWVTVMYGCNNFCTYCIVPYVRG 212

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E SRS+  +++E R L   G  EITLLGQNVN+  GK + G+  +F++L+  +++I G+
Sbjct: 213 RERSRSMDDILEEVRMLGRQGFKEITLLGQNVNS-YGKDI-GDGTSFAELIREVNKIPGI 270

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+TTSHP+D+SD LI A  D + +  +LHLP Q+GS RILK MNR++T  +Y  ++ 
Sbjct: 271 ERIRFTTSHPKDLSDDLIYAMRDCEKVCEHLHLPFQAGSTRILKLMNRKYTKEDYINLVA 330

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           +I+   PDIA+++D IVGFPGET++DF  T+D+++K+ +  A++F YS R GTP + M +
Sbjct: 331 KIKENIPDIALTTDIIVGFPGETEEDFSDTLDILEKVRFDNAYTFLYSKRTGTPAAKMED 390

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVV 439
           QV E VK ER   L +         ND  +G+++EVL+E   K   K   GR+   + V 
Sbjct: 391 QVPEEVKKERFQRLLETQNRISKEINDTFLGKVVEVLVEGVSKTNDKIFTGRTRGNKVVN 450

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
             +    IG ++ VRI  VK  +L G +V
Sbjct: 451 FEADASLIGKLVNVRINTVKTWSLEGSIV 479


>gi|319790575|ref|YP_004152208.1| RNA modification enzyme, MiaB family [Thermovibrio ammonificans
           HB-1]
 gi|317115077|gb|ADU97567.1| RNA modification enzyme, MiaB family [Thermovibrio ammonificans
           HB-1]
          Length = 442

 Score =  468 bits (1204), Expect = e-130,   Method: Composition-based stats.
 Identities = 183/447 (40%), Positives = 280/447 (62%), Gaps = 12/447 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + +RFF+K++GCQMNV DS +M  +    GYE+  + ++AD++++NTC +R K   K YS
Sbjct: 1   MAKRFFIKTFGCQMNVNDSEKMAGLLRDMGYEKAQTPEEADIVIVNTCSVRAKPDNKAYS 60

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
           F+G ++ LK    K   DL+V VAGCV Q E E+IL R P V++V G   + +LP+LLER
Sbjct: 61  FIGNLKRLK----KRRPDLVVAVAGCVPQKEKEQIL-RFPHVDLVFGTFNFVKLPQLLER 115

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            +   RVV+       + E+L +VD     +    A++T+Q GC++FCT+C+VP+TRG E
Sbjct: 116 VKREGRVVEILNRKIPEEEKLPLVDSYL--ENPFIAYVTVQRGCNRFCTYCIVPFTRGRE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            S +   VV+E ++L + GV E+ LLGQNV+ +  +G D      +DLLY +SE++G+ R
Sbjct: 174 RSVAPHLVVEEVKRLAERGVKEVHLLGQNVDFYGYQGTD-----LADLLYMVSEVEGVER 228

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP   S+ + +A  D+  + PY+HLP QSGS+R+L+ MNR +T  EY + +  +
Sbjct: 229 VRFTTSHPAGFSERIARAIRDIPKVCPYVHLPPQSGSNRVLERMNRGYTREEYIEKVQML 288

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R   P++A+S DFIVGFPGET++DF  T+ LV++  + QAF F+YSPR  T  +   + V
Sbjct: 289 REFVPNVALSGDFIVGFPGETEEDFEQTLSLVEECVFDQAFVFEYSPRPFTKAATFKDDV 348

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
            + VK  RL  LQ+ +++Q +  N   VG++ EVLIE    +  +L GR+   + V +  
Sbjct: 349 PKEVKNRRLQTLQELVKKQALERNLERVGKVEEVLIEGFSPKGSELYGRTADNKPVAVEG 408

Query: 443 KNHNIGDIIKVRITDVKISTLYGELVV 469
               IG  ++V IT      L G+ V 
Sbjct: 409 SEELIGKTVEVEITQASPFFLKGKPVT 435


>gi|319409818|emb|CBY90126.1| putative MiaB-like tRNA modification enzyme [Neisseria meningitidis
           WUE 2594]
 gi|325129521|gb|EGC52348.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Neisseria meningitidis
           OX99.30304]
 gi|325135644|gb|EGC58261.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Neisseria meningitidis
           M0579]
 gi|325141561|gb|EGC64027.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Neisseria meningitidis
           961-5945]
 gi|325197636|gb|ADY93092.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Neisseria meningitidis
           G2136]
 gi|325206777|gb|ADZ02230.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Neisseria meningitidis
           M04-240196]
          Length = 442

 Score =  468 bits (1204), Expect = e-130,   Method: Composition-based stats.
 Identities = 195/448 (43%), Positives = 281/448 (62%), Gaps = 13/448 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQ--GYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           ++ F++++GCQMN YDS +M  +   +  G E+V   D+AD+I+ NTC +REKA EKV+S
Sbjct: 2   KKVFIRTFGCQMNEYDSDKMLAVLAEEHGGIEQVTQADEADIILFNTCSVREKAQEKVFS 61

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-E 141
            LGR+R LK         L++ VAGCVA  EGE I++R+P V+VV GPQT +RLP+++ +
Sbjct: 62  DLGRVRPLKEK----NPGLIIGVAGCVASQEGENIIKRAPYVDVVFGPQTLHRLPKMIVD 117

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           +   G   VD  +   +KF+ L        R  G  AF++I EGC K+C+FCVVPYTRG 
Sbjct: 118 KETSGLSQVDISFPEIEKFDHLPPA-----RVEGGAAFVSIMEGCSKYCSFCVVPYTRGE 172

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR L+ V+ E   L   GV EI LLGQNVNA+RG+  DGE C F+ LL  + EI G+ 
Sbjct: 173 EFSRPLNDVLTEIANLAQQGVKEINLLGQNVNAYRGEMDDGEICDFATLLRIVHEIPGIE 232

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHPR+ +D +I+ + DL  L+ +LHLP+QSGSDR+L +M R +TA EY+ II +
Sbjct: 233 RMRFTTSHPREFTDSIIECYRDLPKLVSHLHLPIQSGSDRVLSAMKRGYTALEYKSIIRK 292

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R++RPD+ +SSDFIVGFPGET+ +F  T+ LV  I +  +F F YSPR GTP +N+ + 
Sbjct: 293 LRAIRPDLCLSSDFIVGFPGETEREFEQTLKLVKDIAFDLSFVFIYSPRPGTPAANLHDD 352

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVL 440
                K  RL  L + +  +    N   +G +   L+E    K+  +L  R+   + V  
Sbjct: 353 TPHEEKVRRLEALNEVIEAETARINQTMIGTVQRCLVEGISKKDPDQLQARTANNRVVNF 412

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 I  +I + IT+    +L G++V
Sbjct: 413 TGTPDMINQMIDLEITEAYTFSLRGKIV 440


>gi|145590038|ref|YP_001156635.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
 gi|229890594|sp|A4T007|MIAB_POLSQ RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|145048444|gb|ABP35071.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
          Length = 448

 Score =  468 bits (1204), Expect = e-129,   Method: Composition-based stats.
 Identities = 191/451 (42%), Positives = 284/451 (62%), Gaps = 16/451 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ ++K++GCQMN YDS +M D+    +G    ++ +DAD+++LNTC IREKA +KV+S 
Sbjct: 2   KKLYIKTFGCQMNEYDSGKMADLLHADEGMVMTDTPEDADVVLLNTCSIREKAEDKVFSD 61

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-ER 142
           LGR+R LK    K    +L+ V GCVA  EG +I+ R+P V+VV GPQT +RL +L+ +R
Sbjct: 62  LGRLRELK----KTKPHMLIGVGGCVASQEGRQIVSRAPYVDVVFGPQTLHRLSDLIAQR 117

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            + G   VD  +   +KF+ L       +R+   +A+++I EGC K+C++CVVPYTRG E
Sbjct: 118 RKTGLSQVDISFPEIEKFDHLP-----ASRQTRGSAYVSIMEGCSKYCSYCVVPYTRGEE 172

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK-CTFSDLLYSLSEIKGLV 261
           +SR    V+ E   L   GV EI LLGQNVNA+ GK  D E+   F+ L+  ++EI G+ 
Sbjct: 173 VSRPFDDVLTEVAGLASKGVKEIVLLGQNVNAYLGKMGDAEEIADFALLIEYIAEIPGVE 232

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHP++ +  LI  +  +  L+ +LHLPVQ GSD IL +M R +TA EY+ II +
Sbjct: 233 RIRFTTSHPKEFTQRLIDVYAKVPKLVSHLHLPVQHGSDSILSAMKRGYTALEYKSIIRK 292

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R+VRPD+ +SSDFIVGFPGETD DF   + +V ++ +  +F F +SPR GTP +N+ + 
Sbjct: 293 MRAVRPDLTLSSDFIVGFPGETDADFEKLLKMVQELDFDNSFCFIFSPRPGTPAANLSDD 352

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
               VK +RL  L   +  Q    +   +G+   VLIE   K+   L GR+   + +  +
Sbjct: 353 TPYEVKLKRLQTLLALIEGQSNQISQKMLGKTERVLIEGLAKDGVNLQGRAENNRVIHFS 412

Query: 442 SK----NHNIGDIIKVRITDVKISTLYGELV 468
                 +  IG+++ +RIT+V   TL GELV
Sbjct: 413 PPDQNIDGLIGEMVDIRITEVLNYTLRGELV 443


>gi|220932005|ref|YP_002508913.1| RNA modification enzyme, MiaB family [Halothermothrix orenii H 168]
 gi|219993315|gb|ACL69918.1| RNA modification enzyme, MiaB family [Halothermothrix orenii H 168]
          Length = 450

 Score =  468 bits (1204), Expect = e-129,   Method: Composition-based stats.
 Identities = 175/447 (39%), Positives = 272/447 (60%), Gaps = 13/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +++F+ +YGCQMNV+DS ++  M    GY+  N++++AD+I++NTC +RE A  +V+  +
Sbjct: 4   RKYFILTYGCQMNVHDSEKLAGMLEEMGYKSTNNLEEADIIMVNTCAVRENAELRVFGRV 63

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQ--AEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
           G  + LK        DL++ V GC+ Q      ++  + P V+++ G    + +PEL++R
Sbjct: 64  GDFKRLKEK----NPDLIIGVGGCMMQIDENARKLYEKYPHVDLIFGTHNIHHIPELIKR 119

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            +  +  +   ++ E+      I D  Y R+    A+++I +GC+ FCT+C+VPY RG E
Sbjct: 120 IKEERGRIIEVWNQEEGL----IPDIPYKREDDFKAWISIIQGCNNFCTYCIVPYVRGRE 175

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR  + ++ EARKL   GV EITLLGQNVN+  GK L  E   F+DLL  L+ ++G+ R
Sbjct: 176 RSRPAADIISEARKLASEGVKEITLLGQNVNS-YGKDLK-EDIDFADLLKRLNRVEGIKR 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +RY TSHPRD SD +IK   + D +  + HLPVQSGS RILK MNR +T  EY  +I +I
Sbjct: 234 IRYMTSHPRDFSDKMIKIIKECDKVCEHFHLPVQSGSTRILKKMNRGYTQAEYLNLIKKI 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           +S  PD +I++D IVGFPGET++DF+ T+ ++ ++ +  A++FKYSPR GTP +   +QV
Sbjct: 294 KSQIPDYSITTDIIVGFPGETEEDFQETLKVIREVRFDMAYTFKYSPRKGTPAARHKDQV 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441
            E +K +RL  L +      +  N    G+ +EVLIE   +       GR+   + V++ 
Sbjct: 354 SEKIKQDRLTRLIEVQNSISLENNRKLKGKTVEVLIEGESRNNPDTFEGRTRTNKLVIVP 413

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
              +  G I  V+I  V   TLYGE++
Sbjct: 414 RNENLKGQIANVKINRVGSWTLYGEVI 440


>gi|114778653|ref|ZP_01453469.1| 2-methylthioadenine synthetase [Mariprofundus ferrooxydans PV-1]
 gi|114551118|gb|EAU53679.1| 2-methylthioadenine synthetase [Mariprofundus ferrooxydans PV-1]
          Length = 452

 Score =  468 bits (1204), Expect = e-129,   Method: Composition-based stats.
 Identities = 211/446 (47%), Positives = 294/446 (65%), Gaps = 11/446 (2%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQ-GYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
             F+++YGCQMN YDS RM D+     G   V   +DAD+I++NTC +REKA EKVYS L
Sbjct: 13  TLFIRTYGCQMNEYDSGRMADIMKQAYGLRLVALPEDADVILMNTCSVREKAEEKVYSEL 72

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR R LK  R     D+++ V GCV Q EGE I +R+P V++V GPQTY+RLPE++++ R
Sbjct: 73  GRYRKLKLKR----PDMIIGVGGCVGQQEGERIQKRAPYVDLVFGPQTYHRLPEMVKQIR 128

Query: 145 FGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             +  +   +    +KF+ L    G     +GV   +TI EGCDKFCTFCVVPYTRG E+
Sbjct: 129 RERVHLTQVEMPEIEKFDHLPKHQG-----QGVAGCVTIMEGCDKFCTFCVVPYTRGPEL 183

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR ++ ++ E R+L+ +GV EI+LLGQNVN +RG G D E+  F+ LLY+++++ GL RL
Sbjct: 184 SRPVADILSECRQLLADGVVEISLLGQNVNGYRGVGPDDEEWDFTMLLYAVAKLDGLKRL 243

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+TTSHP +M+  L +A  ++  LMPYLHLPVQSGSD +LK+M+R H    Y + I+ +R
Sbjct: 244 RFTTSHPMEMTSELCQAFAEIPQLMPYLHLPVQSGSDAMLKAMHRGHDRDTYLRQIEELR 303

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              PDIA+SSDFIVG+PGE+D DF  T+DL  ++GY  A+ FKYSPR GTP ++  + V 
Sbjct: 304 EYCPDIALSSDFIVGYPGESDADFEDTLDLARRVGYDSAYCFKYSPRPGTPAAHAEDNVP 363

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
           E VK ERL  L   +REQ        +G+ +EVL+EK G+ +G + GR+   + V     
Sbjct: 364 EAVKDERLQRLLTLMREQSREAMQRQLGRTVEVLVEKAGRNEGDMEGRTADYRIVHFRGS 423

Query: 444 NHNIGDIIKVRITDVKISTLYGELVV 469
              IG ++ VRI +    +L GEL++
Sbjct: 424 ARQIGQVMPVRIVETYGQSLRGELIL 449


>gi|121634220|ref|YP_974465.1| hypothetical protein NMC0353 [Neisseria meningitidis FAM18]
 gi|229890576|sp|A1KS33|MIAB_NEIMF RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|120865926|emb|CAM09663.1| hypothetical protein NMC0353 [Neisseria meningitidis FAM18]
 gi|254672658|emb|CBA06484.1| conserved hypothetical protein [Neisseria meningitidis alpha275]
 gi|261393205|emb|CAX50824.1| putative MiaB-like tRNA modification enzyme [Neisseria meningitidis
           8013]
 gi|308389965|gb|ADO32285.1| hypothetical protein NMBB_2129 [Neisseria meningitidis alpha710]
 gi|325204821|gb|ADZ00275.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Neisseria meningitidis
           M01-240355]
          Length = 442

 Score =  468 bits (1204), Expect = e-129,   Method: Composition-based stats.
 Identities = 195/448 (43%), Positives = 281/448 (62%), Gaps = 13/448 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQ--GYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           ++ F++++GCQMN YDS +M  +   +  G E+V   D+AD+I+ NTC +REKA EKV+S
Sbjct: 2   KKVFIRTFGCQMNEYDSDKMLAVLAEEHGGIEQVTQADEADIILFNTCSVREKAQEKVFS 61

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-E 141
            LGR+R LK         L++ VAGCVA  EGE I++R+P V+VV GPQT +RLP+++ +
Sbjct: 62  DLGRVRPLKEK----NPGLIIGVAGCVASQEGENIIKRAPYVDVVFGPQTLHRLPKMIVD 117

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           +   G   VD  +   +KF+ L        R  G  AF++I EGC K+C+FCVVPYTRG 
Sbjct: 118 KETSGLSQVDISFPEIEKFDHLPPA-----RVEGGAAFVSIMEGCSKYCSFCVVPYTRGE 172

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR L+ V+ E   L   GV EI LLGQNVNA+RG+  DGE C F+ LL  + EI G+ 
Sbjct: 173 EFSRPLNDVLTEIANLAQQGVKEINLLGQNVNAYRGEMDDGEICDFATLLRIVHEIPGIE 232

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHPR+ +D +I+ + DL  L+ +LHLP+QSGSDR+L +M R +TA EY+ II +
Sbjct: 233 RMRFTTSHPREFTDSIIECYRDLPKLVSHLHLPIQSGSDRVLSAMKRGYTALEYKSIIRK 292

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R++RPD+ +SSDFIVGFPGET+ +F  T+ LV  I +  +F F YSPR GTP +N+ + 
Sbjct: 293 LRAIRPDLCLSSDFIVGFPGETEREFEQTLKLVKDIAFDLSFVFIYSPRPGTPAANLHDD 352

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVL 440
                K  RL  L + +  +    N   +G +   L+E    K+  +L  R+   + V  
Sbjct: 353 TPHEEKVRRLEALNEVIEAETARINQTMIGTVQRCLVEGISKKDPDQLQARTANNRVVNF 412

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 I  +I + IT+    +L G++V
Sbjct: 413 TGTPDMINQMIDLEITEAYTFSLRGKVV 440


>gi|86148579|ref|ZP_01066864.1| tRNA 2-methylthioadenosine synthase [Vibrio sp. MED222]
 gi|85833645|gb|EAQ51818.1| tRNA 2-methylthioadenosine synthase [Vibrio sp. MED222]
          Length = 474

 Score =  467 bits (1203), Expect = e-129,   Method: Composition-based stats.
 Identities = 190/449 (42%), Positives = 284/449 (63%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++  +K++GCQMN YDS +M D+   + GYE     ++AD+++LNTC IREKA EKV+
Sbjct: 1   MSKKLLIKTWGCQMNEYDSSKMADLLNAANGYELTEVPEEADVLLLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR + LK+ +      +   V    A  EG+ I +R+P V+V+ GPQT +RLPE+++
Sbjct: 61  HQLGRWKTLKDKKEGVVIGVGGCV----ATQEGDHIRQRAPYVDVIFGPQTLHRLPEMIK 116

Query: 142 RARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
            +   ++ V+D  +   +KF+ L        +  G TA+++I EGC K+CT+CVVPYTRG
Sbjct: 117 SSLSNEKPVMDISFPEIEKFDNLP-----EPKADGATAYVSIMEGCSKYCTYCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR +  V+ E  +L + GV E+ LLGQNVNA+RG   +G+ CTF++LL  ++ I G+
Sbjct: 172 EEVSRPMDDVLFEVAQLAEQGVREVNLLGQNVNAFRGPTHEGDICTFAELLRLVASIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+TTSHP +  D +I+ + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II 
Sbjct: 232 DRIRFTTSHPLEFGDDIIEVYKDTPELVSFLHLPVQSGSDRILTMMKRPHTAIEYKSIIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R  RPDI ISSDFIVGFPGE+  DF+ TM L+ ++ +  +FSF +SPR GTP ++   
Sbjct: 292 KLRKARPDIQISSDFIVGFPGESKQDFQDTMKLIKEVDFDMSFSFVFSPRPGTPAADYPC 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439
            V    K +RL  LQ+ +  Q + F+   +G    +L+E   ++   +L GR+   + V 
Sbjct: 352 DVPAQEKKDRLYELQQTVNTQAMRFSRLMLGTEQRILVEGPSRKNLMELRGRTENSRVVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG  + V+IT+V  ++L GELV
Sbjct: 412 FEGSADLIGQFVDVKITEVYTNSLRGELV 440


>gi|269468093|gb|EEZ79803.1| 2-methylthioadenine synthetase [uncultured SUP05 cluster bacterium]
          Length = 441

 Score =  467 bits (1203), Expect = e-129,   Method: Composition-based stats.
 Identities = 192/444 (43%), Positives = 288/444 (64%), Gaps = 11/444 (2%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +  ++++GCQMN YDS +M D+   S G E  + + +AD+++LNTC IREKA EK++  L
Sbjct: 5   KLHIRTFGCQMNEYDSNKMFDVLKHSHGLESTDDVLEADVLLLNTCSIREKAQEKLFHQL 64

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR R LK        +L++ V GCVA  EGE IL+R+P V+++ GPQT +RLP +L    
Sbjct: 65  GRWRKLKEK----NPNLVIGVGGCVASQEGELILKRAPYVDIIFGPQTLHRLPAMLNDVL 120

Query: 145 FGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             K+  +D  +   +KF+ L        +  GVT+F++I EGC K+CTFCVVPYTRG E+
Sbjct: 121 GDKKTSIDISFPEIEKFDHLP-----EPKTNGVTSFVSIMEGCSKYCTFCVVPYTRGEEV 175

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR    V+ E + L + GV E+ LLGQNVNA++G   DG+    + L+  +++I G+ R+
Sbjct: 176 SRPFDDVIKEVQILANQGVREVNLLGQNVNAYQGLMDDGQSADLALLINLVAQINGIDRI 235

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           RYTTSHP + SD LI+A+ ++  L+ +LHLP+QSGSD+IL  M R HTA EY+  I R+R
Sbjct: 236 RYTTSHPVEFSDSLIQAYAEVPELVSHLHLPIQSGSDKILTLMKRGHTALEYKSKIRRLR 295

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
            +RPDI+ISSDFI+GFPGET  DF  TM +++ IG+ ++FSF YSPR GTP +   + VD
Sbjct: 296 EIRPDISISSDFIIGFPGETKQDFNDTMKVINDIGFDKSFSFIYSPRPGTPATGYPDDVD 355

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
             +K +RL  +QK + E   + + + +G + +VL+E   ++   L G++  +++      
Sbjct: 356 MKIKKDRLSLVQKTIDESTETISKSMIGSVQKVLVENKARKDDNLFGKTENMRNTHFKGN 415

Query: 444 NHNIGDIIKVRITDVKISTLYGEL 467
              IG I+ V+IT  + ++L G+L
Sbjct: 416 ESLIGQIVSVKITAARGNSLVGKL 439


>gi|51473976|ref|YP_067733.1| tRNA-methylthiotransferase (MiaB protein) [Rickettsia typhi str.
           Wilmington]
 gi|81389933|sp|Q68VU1|MIAB_RICTY RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|51460288|gb|AAU04251.1| tRNA-methylthiotransferase (MiaB protein) [Rickettsia typhi str.
           Wilmington]
          Length = 445

 Score =  467 bits (1203), Expect = e-129,   Method: Composition-based stats.
 Identities = 234/449 (52%), Positives = 329/449 (73%), Gaps = 7/449 (1%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + ++ ++K+YGCQMNVYDS++++D+ +  GYE    + +AD+I+LNTCHIREKAAEK YS
Sbjct: 1   MSKKLYIKTYGCQMNVYDSVKIQDLLYPFGYESTEDIKEADIIILNTCHIREKAAEKTYS 60

Query: 83  FLGRIRNLKNSRIKEG-GDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
            LGRI+ L+N+R +EG    ++VVAGCVAQAEGE I  R+P V++VVGPQ+YY LPEL+ 
Sbjct: 61  ELGRIKKLQNTRKQEGLNPAIIVVAGCVAQAEGEVIFTRTPYVDIVVGPQSYYNLPELIS 120

Query: 142 RA-RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           +  R  K ++D D+  E KF+ L          +G ++F+++QEGCDKFCTFCVVPYTRG
Sbjct: 121 KVVRHEKHLIDLDFVEEAKFDNLP----EQLYTQGASSFISVQEGCDKFCTFCVVPYTRG 176

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E SRS+ QV  E+ K++ N   EI LLGQNVNA+ GKG   +  T +DLL  L++I  L
Sbjct: 177 AEFSRSVEQVYRESLKVVSNDTKEIILLGQNVNAYHGKGPKDKIFTLADLLKHLAQIPNL 236

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            RLRY TSHP DM+D LIK HG    LMP+LHLPVQSGS++ILK+MNR+H    Y  II+
Sbjct: 237 ERLRYMTSHPIDMTDDLIKLHGTEPKLMPFLHLPVQSGSNKILKAMNRKHDRDYYFNIIN 296

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           R+R  R DI +SSDFIVGFPGET+ DF  T+DLV ++ Y Q +SFKYSPR GTPG+   +
Sbjct: 297 RLREARSDIVLSSDFIVGFPGETEKDFEDTLDLVQRVKYGQCYSFKYSPRPGTPGAIRTD 356

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440
           Q+ E++K++RL  LQK+L  QQ++FN++CVG  ++VL ++ GK + +++G++P++QSV +
Sbjct: 357 QIPEHIKSKRLTILQKELATQQLAFNESCVGSTMKVLFDRDGKFEDQIIGKTPYMQSVYI 416

Query: 441 NSKN-HNIGDIIKVRITDVKISTLYGELV 468
           ++ N   +G I+ V IT   +++L GE++
Sbjct: 417 HNPNKSLLGKIVDVIITKAALNSLTGEIL 445


>gi|23015405|ref|ZP_00055182.1| COG0621: 2-methylthioadenine synthetase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 425

 Score =  467 bits (1203), Expect = e-129,   Method: Composition-based stats.
 Identities = 234/431 (54%), Positives = 312/431 (72%), Gaps = 10/431 (2%)

Query: 36  MNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRI 95
           MNVYDS RM D+    GY   +  ++AD+++LNTCHIREKAAEKV+S LGR+R +K +R 
Sbjct: 1   MNVYDSARMADVLAPLGYGPADHAEEADMVILNTCHIREKAAEKVFSELGRLRKIKTARA 60

Query: 96  KEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA-RFGKRVVDTDY 154
           + G  +++ VAGCVAQAEGEEILRR+P V++V+GPQTY+RLPE++ +A R G  V+DT++
Sbjct: 61  EAGQRMILAVAGCVAQAEGEEILRRAPFVDIVLGPQTYHRLPEMVAQAARAGGAVLDTEF 120

Query: 155 SVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEA 214
             E KF+ L          +G +AFL++QEGCDKFCTFCVVPYTRG E SR  + ++ EA
Sbjct: 121 PAEPKFDFLP-----EPLAQGSSAFLSVQEGCDKFCTFCVVPYTRGAEYSRPATAILAEA 175

Query: 215 RKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMS 274
            KL   GV EITLLGQNVN W G     E      L+ +L+E+ G+ RLRYTTSHPRDM 
Sbjct: 176 AKLAQGGVREITLLGQNVNGWHGD----EGWGLGRLIRALAEVPGVERLRYTTSHPRDMD 231

Query: 275 DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSD 334
           D LI+AH +L  LMP+LHLPVQSGSDRIL +MNR H    Y +++DR++SV PD+A+SSD
Sbjct: 232 DELIRAHAELPQLMPFLHLPVQSGSDRILAAMNRGHDRDTYLRLVDRLKSVCPDLALSSD 291

Query: 335 FIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCL 394
           FIVGFPGE+D DF A+MDL+ ++G+ Q +SFKYSPR GTP + M +QV E VK ERL  +
Sbjct: 292 FIVGFPGESDADFEASMDLIRQVGFVQTYSFKYSPRPGTPAAAMDQQVPEPVKDERLAQV 351

Query: 395 QKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVR 454
           Q  L EQ   FN +CVG+ + VL+++ G+  G+L+GRSP++Q V + +  H IG ++ +R
Sbjct: 352 QALLMEQTTRFNHSCVGREMRVLLDRPGRHAGQLLGRSPYMQPVHVKAAAHLIGTVVNLR 411

Query: 455 ITDVKISTLYG 465
           IT V  ++L  
Sbjct: 412 ITKVHPNSLEA 422


>gi|84394394|ref|ZP_00993113.1| tRNA 2-methylthioadenosine synthase [Vibrio splendidus 12B01]
 gi|84374996|gb|EAP91924.1| tRNA 2-methylthioadenosine synthase [Vibrio splendidus 12B01]
          Length = 474

 Score =  467 bits (1202), Expect = e-129,   Method: Composition-based stats.
 Identities = 190/449 (42%), Positives = 284/449 (63%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++  +K++GCQMN YDS +M D+   + GYE     ++AD+++LNTC IREKA EKV+
Sbjct: 1   MSKKLLIKTWGCQMNEYDSSKMADLLNAANGYELTEVPEEADVLLLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR + LK+ +      +   V    A  EG+ I +R+P V+V+ GPQT +RLPE+++
Sbjct: 61  HQLGRWKTLKDKKEGVVIGVGGCV----ATQEGDHIRQRAPYVDVIFGPQTLHRLPEMIK 116

Query: 142 RARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
            +   ++ V+D  +   +KF+ L        +  G TA+++I EGC K+CT+CVVPYTRG
Sbjct: 117 SSLSNEKPVMDISFPEIEKFDNLP-----EPKADGATAYVSIMEGCSKYCTYCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR +  V+ E  +L + GV E+ LLGQNVNA+RG   +G+ CTF++LL  ++ I G+
Sbjct: 172 EEVSRPMDDVLYEVAQLAEQGVREVNLLGQNVNAFRGPTYEGDICTFAELLRLVASIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+TTSHP +  D +I+ + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II 
Sbjct: 232 DRIRFTTSHPLEFGDDIIEVYKDTPELVSFLHLPVQSGSDRILTMMKRPHTAIEYKSIIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R  RPDI ISSDFIVGFPGE+  DF+ TM L+ ++ +  +FSF +SPR GTP ++   
Sbjct: 292 KLRKARPDIQISSDFIVGFPGESKQDFQDTMKLIKEVDFDMSFSFVFSPRPGTPAADYPC 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439
            V    K +RL  LQ+ +  Q + F+   +G    +L+E   ++   +L GR+   + V 
Sbjct: 352 DVPAQEKKDRLWELQQTVNTQAMRFSRLMLGTEQRILVEGPSRKNLMELRGRTENSRVVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG  + V+IT+V  ++L GELV
Sbjct: 412 FEGSADLIGQFVDVKITEVYTNSLRGELV 440


>gi|57340162|gb|AAW50068.1| hypothetical protein FTT0618 [synthetic construct]
          Length = 477

 Score =  467 bits (1202), Expect = e-129,   Method: Composition-based stats.
 Identities = 190/447 (42%), Positives = 277/447 (61%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYER-VNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ F+K+ GCQMN YDS RM ++          +   DAD+I++NTC IREKA EKV+  
Sbjct: 31  KKVFIKTLGCQMNEYDSARMHEVLNEHFDTVKTDDYKDADIILINTCSIREKAQEKVFHE 90

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK    K   DL++ V GCVA  EGE I++R+P V++V GPQT +RLPE++++ 
Sbjct: 91  LGRWKGLK----KTNEDLIIGVGGCVASQEGENIIKRAPFVDLVFGPQTIHRLPEMIKQK 146

Query: 144 RFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           +  ++  VD  +   +KF+ L        +  G  A+++I EGCDK+C++CVVPYTRG E
Sbjct: 147 QKTQQSQVDISFPEVEKFDYLP-----EPKAEGAKAYVSIMEGCDKYCSYCVVPYTRGPE 201

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           ++R    V+ E   L + GV EITLLGQNVN + G   +G+    + L++ ++EI G+ R
Sbjct: 202 VNRPFEDVLAECAILAEQGVKEITLLGQNVNHYLGPMENGQTADLALLIHFIAEIDGIER 261

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP + S  LI A+  +  L  +LHLPVQ GSDRIL +M R HT  E++Q I ++
Sbjct: 262 IRFTTSHPVEFSQNLIDAYATVPELANHLHLPVQHGSDRILINMKRNHTILEFKQKIRKL 321

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R++RPDI ISSDFIVGFPGET++DF+  +DLV +I + Q+FSF YS R GTP +++ +  
Sbjct: 322 RAIRPDITISSDFIVGFPGETEEDFQKLLDLVKEINFDQSFSFIYSKRPGTPAADLPDDT 381

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLN 441
              VK +RL  LQ  L       +   VG    +L++    K+   L GR+   + V   
Sbjct: 382 PMEVKKDRLKRLQDLLNSNAQIISRQMVGTNQRILVDGTSKKDDNILSGRTENNRVVNFK 441

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                IG    V+IT+   ++L GEL+
Sbjct: 442 GDKSLIGQFAMVKITESLPNSLRGELI 468


>gi|218708745|ref|YP_002416366.1| hypothetical protein VS_0724 [Vibrio splendidus LGP32]
 gi|218321764|emb|CAV17719.1| Hypothetical protein VS_0724 [Vibrio splendidus LGP32]
          Length = 474

 Score =  467 bits (1202), Expect = e-129,   Method: Composition-based stats.
 Identities = 190/449 (42%), Positives = 284/449 (63%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++  +K++GCQMN YDS +M D+   + GYE     ++AD+++LNTC IREKA EKV+
Sbjct: 1   MSKKLLIKTWGCQMNEYDSSKMADLLNAANGYELTEVPEEADVLLLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR + LK+ +      +   V    A  EG+ I +R+P V+V+ GPQT +RLPE+++
Sbjct: 61  HQLGRWKTLKDKKEGVVIGVGGCV----ATQEGDHIRQRAPYVDVIFGPQTLHRLPEMIK 116

Query: 142 RARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
            +   ++ V+D  +   +KF+ L        +  G TAF++I EGC K+CT+CVVPYTRG
Sbjct: 117 SSLSNEKPVMDISFPEIEKFDNLP-----EPKAEGATAFVSIMEGCSKYCTYCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR +  V+ E  +L + GV E+ LLGQNVNA+RG   +G+ C+F++LL  ++ I G+
Sbjct: 172 EEVSRPMDDVLFEVAQLAEQGVREVNLLGQNVNAYRGPTHEGDICSFAELLRLVASIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+TTSHP +  D +I+ + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II 
Sbjct: 232 DRIRFTTSHPLEFGDDIIEVYKDTPELVSFLHLPVQSGSDRILTMMKRPHTAIEYKSIIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R  RPDI ISSDFIVGFPGE+  DF+ TM L+ ++ +  +FSF +SPR GTP ++   
Sbjct: 292 KLRKARPDIQISSDFIVGFPGESKQDFQDTMKLIKEVDFDMSFSFVFSPRPGTPAADYPC 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439
            V    K +RL  LQ+ +  Q + F+   +G    +L+E   ++   +L GR+   + V 
Sbjct: 352 DVPAQEKKDRLYELQQTVNTQAMRFSRLMLGTEQRILVEGPSRKNLMELRGRTENSRVVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG  + V+IT+V  ++L GELV
Sbjct: 412 FEGSADLIGQFVDVKITEVYTNSLRGELV 440


>gi|171057275|ref|YP_001789624.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Leptothrix
           cholodnii SP-6]
 gi|229890558|sp|B1XYX5|MIAB_LEPCP RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|170774720|gb|ACB32859.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Leptothrix cholodnii
           SP-6]
          Length = 469

 Score =  467 bits (1202), Expect = e-129,   Method: Composition-based stats.
 Identities = 197/459 (42%), Positives = 286/459 (62%), Gaps = 18/459 (3%)

Query: 18  VDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKA 76
                  ++ +++++GCQMN YDS +M D+  + +GY   +  + ADLI+ NTC +REKA
Sbjct: 20  TAPAASGKKVYIRTFGCQMNEYDSDKMSDVMAAAEGYTPTDDPEQADLILFNTCSVREKA 79

Query: 77  AEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL 136
            EKV+S LGR+++LK         +L+ V GCVA  EG  I+ R+P V+VV GPQT +RL
Sbjct: 80  QEKVFSDLGRVKHLKA------RGVLIGVGGCVASQEGAAIIERAPYVDVVFGPQTLHRL 133

Query: 137 PELL-ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
           P++L +RAR G+  VD  +   +KF+ L        +  G  AF++I EGC K+C++CVV
Sbjct: 134 PQMLAQRARQGRPQVDISFPEIEKFDHLPPA-----KVDGAAAFVSIMEGCSKYCSYCVV 188

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG-EKCTFSDLLYSL 254
           PYTRG E SR   +V+ E   L D GV E+TLLGQNVNA+RG+  D  +   F+ LL  +
Sbjct: 189 PYTRGEEFSRPFDEVLTEVAGLADQGVKEVTLLGQNVNAYRGRMGDTSDIADFATLLEYV 248

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
            EI G+ R+RYTTSHP + +  LI+A+  L  L+ +LHLPVQ GSDRIL  M R +T  E
Sbjct: 249 HEIPGIERIRYTTSHPNEFTPALIEAYARLPKLVNHLHLPVQHGSDRILSGMKRGYTVLE 308

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
           Y+  I ++R++RPDI++S+DFIVGFPGETDDD   TM L+D IG+  +FSF +SPR GTP
Sbjct: 309 YKSTIRKLRAIRPDISLSTDFIVGFPGETDDDHARTMKLIDDIGFDASFSFIFSPRPGTP 368

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSP 433
            + + +     VK  RL  LQ  + +     ++  VG +  VL+E    ++  +L+GR+ 
Sbjct: 369 AAALHDDTSYEVKLARLQQLQATIEDNVRRISERRVGTVQRVLVEGPSRRDPNELMGRTE 428

Query: 434 WLQSVVLNSKNH---NIGDIIKVRITDVKISTLYGELVV 469
             + V  +   +    +G +I +RIT     +L GE V+
Sbjct: 429 CNRIVNFDGGPNAARLVGRMIDIRITLAYPHSLRGEPVL 467


>gi|52080307|ref|YP_079098.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
           licheniformis ATCC 14580]
 gi|52785683|ref|YP_091512.1| YmcB [Bacillus licheniformis ATCC 14580]
 gi|319645912|ref|ZP_08000142.1| hypothetical protein HMPREF1012_01176 [Bacillus sp. BT1B_CT2]
 gi|81385531|sp|Q65JE5|MIAB_BACLD RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|52003518|gb|AAU23460.1| conserved hypothetical protein [Bacillus licheniformis ATCC 14580]
 gi|52348185|gb|AAU40819.1| YmcB [Bacillus licheniformis ATCC 14580]
 gi|317391662|gb|EFV72459.1| hypothetical protein HMPREF1012_01176 [Bacillus sp. BT1B_CT2]
          Length = 509

 Score =  467 bits (1202), Expect = e-129,   Method: Composition-based stats.
 Identities = 174/448 (38%), Positives = 259/448 (57%), Gaps = 15/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++F++++YGCQMN +D+  M  +F + GYE  +S +DA++I+LNTC IRE A  KV+  +
Sbjct: 66  RKFYIRTYGCQMNEHDTEVMAGIFMALGYEPTDSTEDANVILLNTCAIRENAENKVFGEI 125

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G ++ LK    K+  DL++ V GC++Q E     IL++ P V+++ G    +RLPELL  
Sbjct: 126 GHLKALK----KDNPDLILGVCGCMSQEESVVNRILKKHPFVDLIFGTHNIHRLPELLSE 181

Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           A   K +V   +S E D  E L  V     R   +  ++ I  GCDKFCT+C+VPYTRG 
Sbjct: 182 AYLSKEMVIEVWSKEGDVIENLPKV-----RTGKIKGWVNIMYGCDKFCTYCIVPYTRGK 236

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR    ++ E R+L   G  EITLLGQNVNA  GK  +  +     L+  L +I  + 
Sbjct: 237 ERSRRPEDIIQEVRRLAAEGYKEITLLGQNVNA-YGKDFEDMEYGLGHLMDELRKID-IP 294

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHPRD  D LI+       L+ ++HLPVQSGS  +LK M R++    Y +++ +
Sbjct: 295 RIRFTTSHPRDFDDHLIEVLAKGGNLLDHIHLPVQSGSSDVLKLMARKYDRERYLELVAK 354

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I+   P+ ++++D IVGFP ETD+ F  T+ L  ++ +  A++F YSPR GTP + M + 
Sbjct: 355 IKKAMPNASLTTDIIVGFPNETDEQFEETLSLYREVEFDSAYTFIYSPREGTPAAKMKDN 414

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVL 440
           V   VK ERL  L + + E          GQ++EVL+E   K     L G +   + V  
Sbjct: 415 VPMRVKKERLQRLNEVVNEISAKKMKEYEGQVVEVLVEGESKNNPDILAGYTRKNKLVNF 474

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 IG ++ V+I   K  +L GE+V
Sbjct: 475 KGPKEAIGQLVNVKIHQAKTWSLDGEMV 502


>gi|332188733|ref|ZP_08390446.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Sphingomonas sp. S17]
 gi|332011239|gb|EGI53331.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Sphingomonas sp. S17]
          Length = 440

 Score =  467 bits (1202), Expect = e-129,   Method: Composition-based stats.
 Identities = 246/443 (55%), Positives = 312/443 (70%), Gaps = 14/443 (3%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+ F VKS+GCQMNVYD  RM ++  +QG    +    ADL+VLNTCHIREKA EKVYS 
Sbjct: 5   PKTFHVKSFGCQMNVYDGERMAELMAAQGLSATDDASAADLVVLNTCHIREKATEKVYSD 64

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +GR+R       ++G   ++ VAGCVAQAEG EI+RR+  V+VVVGPQ Y+ LPEL+ +A
Sbjct: 65  IGRLRK---DAGEQGRKPMIAVAGCVAQAEGAEIVRRA-KVDVVVGPQAYHNLPELVAKA 120

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             G+  +DTD  VE KF  L        RK G +AFLT+QEGCDKFCT+CVVPYTRG E+
Sbjct: 121 VAGEAALDTDMPVESKFAHLP-----GRRKVGPSAFLTVQEGCDKFCTYCVVPYTRGAEV 175

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SRS S +VDEA+ L+D G  EITLLGQNVNAW     D +      L+  L  I GL R+
Sbjct: 176 SRSFSAIVDEAKALVDAGAREITLLGQNVNAWN----DADDRGLHGLIRELDRISGLHRI 231

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           RYTTSHP DM+  LI AH D++ LMP+LHLPVQSGSDRILK+MNR+HT   Y ++IDR+R
Sbjct: 232 RYTTSHPNDMTQGLIDAHRDVESLMPFLHLPVQSGSDRILKAMNRQHTRDSYMRVIDRVR 291

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           + RPDIA+S DFIVGFPGET+++F  T+ LVD +G+AQAFSFKYSPR GTP + M +Q+ 
Sbjct: 292 AARPDIALSGDFIVGFPGETEEEFADTLSLVDAMGHAQAFSFKYSPRPGTPAATMADQLP 351

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
             V  +RL  LQ  L   Q +FN A VG+   VLIE+ GK  G+++G+SPWLQSV L   
Sbjct: 352 AEVMDDRLQRLQAALNRDQHAFNAASVGRTCTVLIERRGKLPGQMLGKSPWLQSVHLIG- 410

Query: 444 NHNIGDIIKVRITDVKISTLYGE 466
           +H IGD+I+V +     ++L G+
Sbjct: 411 DHQIGDLIEVELVAAGPNSLTGQ 433


>gi|260892471|ref|YP_003238568.1| RNA modification enzyme, MiaB family [Ammonifex degensii KC4]
 gi|260864612|gb|ACX51718.1| RNA modification enzyme, MiaB family [Ammonifex degensii KC4]
          Length = 447

 Score =  467 bits (1202), Expect = e-129,   Method: Composition-based stats.
 Identities = 182/445 (40%), Positives = 264/445 (59%), Gaps = 15/445 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           ++++ +YGCQMN +DS  M  +    GY R  S ++ADLI+LNTC +RE A  KV+  LG
Sbjct: 9   KYYIFTYGCQMNEWDSEVMAGLVEEMGYTRAGSPEEADLILLNTCCVRESAENKVWGLLG 68

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGE--EILRRSPIVNVVVGPQTYYRLPELLERA 143
            +  LK  R      LL+ V GC+ Q  G   EI RR P V+++VG    + LP L+  A
Sbjct: 69  SLGRLKQRRPW----LLLGVTGCLPQRPGAAAEIKRRFPFVDLIVGTYNRHELPRLILEA 124

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             G +VV      ++  E L I      R+  + A++ I  GC+ FCT+C+VPY RG E 
Sbjct: 125 ERG-QVVAVSPEEQEIVEGLPI-----RRESRLRAWVPIMFGCNNFCTYCIVPYVRGKER 178

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR    ++ E ++L   G  EI LLGQNVNA  GKGL     TF+DLL  L+ ++G+ R+
Sbjct: 179 SRRPEDILREVKELAKEGYREIFLLGQNVNA-YGKGLQP-PVTFADLLRQLNAVEGIWRI 236

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           RYTTSHPRD  + LI+A  +L  +    HLPVQ+GSD+IL+ M R +T  +Y  ++ RIR
Sbjct: 237 RYTTSHPRDFGEDLIRAVAELPKVCENFHLPVQAGSDKILRRMGRGYTRQDYLNLVRRIR 296

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
            V P  + S+D +VGFPGET++DF  T+ LV ++G+ QAF F Y+PR GTP ++  +QV 
Sbjct: 297 EVLPQASFSTDIMVGFPGETEEDFEQTLLLVREVGFDQAFIFIYNPRPGTPAASFPDQVP 356

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVLNS 442
             VK ER+  L    +      N A VG++ EVL+E   +    +L GR+   ++V+L+ 
Sbjct: 357 HEVKVERIKRLLALQQAISRERNRAEVGKVHEVLVEGPSRTNPDRLEGRTRTYKTVILDG 416

Query: 443 KNHNIGDIIKVRITDVKISTLYGEL 467
                G ++ VRIT   ++ L G++
Sbjct: 417 TPELTGKLVAVRITAGYLTHLEGKV 441


>gi|161869349|ref|YP_001598516.1| hypothetical protein NMCC_0355 [Neisseria meningitidis 053442]
 gi|229890574|sp|A9M1G4|MIAB_NEIM0 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|161594902|gb|ABX72562.1| bifunctional enzyme involved in thiolation and methylation of tRNA
           [Neisseria meningitidis 053442]
          Length = 442

 Score =  467 bits (1202), Expect = e-129,   Method: Composition-based stats.
 Identities = 194/448 (43%), Positives = 281/448 (62%), Gaps = 13/448 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQ--GYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           ++ F++++GCQMN YDS +M  +   +  G E+V   D+AD+I+ NTC +REKA EKV+S
Sbjct: 2   KKVFIRTFGCQMNEYDSDKMLAVLAEEHGGIEQVTQADEADIILFNTCSVREKAQEKVFS 61

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-E 141
            LGR+R LK         L++ VAGCVA  EGE I++R+P V+VV GPQT +RLP+++ +
Sbjct: 62  DLGRVRPLKEK----NPGLIIGVAGCVASQEGENIIKRAPYVDVVFGPQTLHRLPKMIVD 117

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           +   G   VD  +   +KF+ L        R  G  AF++I EGC K+C+FCVVPYTRG 
Sbjct: 118 KETSGLSQVDISFPEIEKFDHLPPA-----RVEGGAAFVSIMEGCSKYCSFCVVPYTRGE 172

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR L+ V+ E   L   GV EI LLGQNVNA+ G+  DGE C F+ LL  + EI G+ 
Sbjct: 173 EFSRPLNDVLTEIANLAQQGVKEINLLGQNVNAYCGEMDDGEICDFATLLRIVHEIPGIE 232

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHPR+ +D +I+ + DL  L+ +LHLP+QSGSDR+L +M R +TA EY+ II +
Sbjct: 233 RMRFTTSHPREFTDSIIECYRDLPKLVSHLHLPIQSGSDRVLSAMKRGYTALEYKSIIRK 292

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R++RPD+ +SSDFIVGFPGET+ +F  T+ LV  I +  +F F YSPR GTP +N+ + 
Sbjct: 293 LRAIRPDLCLSSDFIVGFPGETEREFEQTLKLVKDIAFDLSFVFIYSPRPGTPAANLHDD 352

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVL 440
                K  RL  L + +  +    N   +G +   L+E    K+  +L  R+   + V  
Sbjct: 353 TPHEEKVRRLEALNEVIEAETARINQTMIGTVQRCLVEGISKKDPDQLQARTANNRVVNF 412

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
               + I  +I + IT+    +L G++V
Sbjct: 413 TGTPNMINQMIDLEITEAYTFSLRGKVV 440


>gi|557263|emb|CAA57577.1| hypothetical protein [Pseudomonas aeruginosa PAO1]
          Length = 446

 Score =  467 bits (1202), Expect = e-129,   Method: Composition-based stats.
 Identities = 202/450 (44%), Positives = 280/450 (62%), Gaps = 13/450 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++ F++++GCQMN YDS RM D+    Q  E   +  +AD+I+LNTC IREK  EKV 
Sbjct: 1   MAKKLFIETHGCQMNEYDSSRMADLLGEHQALEVTENAAEADVILLNTCSIREKVQEKVC 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S LG  R LK        DL++ V GCVA  EG  I  R+P V+VV GPQT +RLPE+++
Sbjct: 61  SKLGMWRELKQQ----NPDLVIGVGGCVASQEGAAIRERAPYVDVVFGPQTLHRLPEMID 116

Query: 142 RARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
            AR  ++  VD  +   +KF+RL        R  G TAF+++ EGC K+C+FCVVPYTRG
Sbjct: 117 AARSTRKPQVDVSFPEIEKFDRLP-----EPRVDGPTAFVSVMEGCSKYCSFCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR    V+ E   L +NGV E+TLLGQNVN +RG   DG    F++LL  ++ + G+
Sbjct: 172 EEVSRPFDDVIAEVIHLAENGVREVTLLGQNVNGFRGLTHDGRLADFAELLRVVAAVDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+RYTTSHP + SD LI+AH ++  L+ ++HLPVQSGSDR+L +M R HT  EY+  I 
Sbjct: 232 ERIRYTTSHPLEFSDALIQAHAEVPELVKFIHLPVQSGSDRVLAAMKRNHTVLEYKSRIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++++  PDI ISSDFIVGFPGET+ DF  TM LV+ +G+  +FSF YS R GTP +++ +
Sbjct: 292 KLKAAVPDICISSDFIVGFPGETEKDFEQTMKLVEDVGFDFSFSFIYSARPGTPAADLAD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439
            + E VK +RL  LQ ++ +Q    +   VG    +L+    KE  G L GR+   + V 
Sbjct: 352 DLPEEVKKQRLQILQSRIHQQGYEISRRMVGSTQRILVTDFSKEDPGMLQGRTENNRIVN 411

Query: 440 LNSKNH-NIGDIIKVRITDVKISTLYGELV 468
               N   IG   +V I D    +L G L+
Sbjct: 412 FRCDNPRLIGQFAQVHIDDALPHSLRGTLI 441


>gi|65321098|ref|ZP_00394057.1| COG0621: 2-methylthioadenine synthetase [Bacillus anthracis str.
           A2012]
          Length = 524

 Score =  467 bits (1202), Expect = e-129,   Method: Composition-based stats.
 Identities = 182/450 (40%), Positives = 271/450 (60%), Gaps = 15/450 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
             ++F++++YGCQMN +D+  M  +F + GYE   S +DAD+++LNTC IRE A  KV+ 
Sbjct: 79  TGRKFYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFG 138

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELL 140
            LG +++LK    +   DLL+ V GC++Q E    +I++++  V++V G    +RLP +L
Sbjct: 139 ELGHLKSLK----RRNSDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYIL 194

Query: 141 ERARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           + A F K  V   +S E D  E L  V     R+  + A++ I  GCDKFCT+C+VPYTR
Sbjct: 195 KDAMFSKETVVEVWSKEGDVIENLPKV-----RRGDIKAWVNIMYGCDKFCTYCIVPYTR 249

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G E SR    ++ E R L  NG  EITLLGQNVNA  GK  +  +    DL+  L ++  
Sbjct: 250 GKERSRRPEDIIQEIRHLAANGYKEITLLGQNVNA-YGKDFEDIEYGLGDLMDELRKVD- 307

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           + R+R+TTSHPRD  D LI+  G    L+ ++HLPVQSGS  +LK M R+++   Y +++
Sbjct: 308 IARIRFTTSHPRDFDDHLIEVLGKGGNLVEHIHLPVQSGSTEMLKIMARKYSREHYLELV 367

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            +I+   P+  +++D IVGFP ETD+ F  TM L  ++G+  AF+F YSPR GTP + M 
Sbjct: 368 RKIKEAIPNAVLTTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMK 427

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSV 438
           + V   VK ERL  L   + +  +  ND   GQI+EVL++   K   + L G +   + V
Sbjct: 428 DNVPMEVKKERLQRLNALVNKLAIEKNDRYKGQIVEVLVDGESKNNPEVLAGYTRTNKLV 487

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468
              +    IG ++K+++TD K  +L GELV
Sbjct: 488 NFVAPKSLIGQLVKIKVTDAKTWSLNGELV 517


>gi|325127523|gb|EGC50449.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Neisseria meningitidis
           N1568]
          Length = 442

 Score =  467 bits (1201), Expect = e-129,   Method: Composition-based stats.
 Identities = 198/448 (44%), Positives = 280/448 (62%), Gaps = 13/448 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQ--GYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           ++ F++++GCQMN YDS +M  +   +  G E+V   DDAD+I+ NTC +REKA EKV+S
Sbjct: 2   KKVFIRTFGCQMNEYDSDKMLAVLAEEHGGIEQVTQPDDADIILFNTCSVREKAQEKVFS 61

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-E 141
            LGR+R LK         L++ VAGCVA  EGE I++R+P V+VV GPQT +RLP+++ +
Sbjct: 62  DLGRVRPLKEK----NPGLIIGVAGCVASQEGENIVKRAPYVDVVFGPQTLHRLPKMIVD 117

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           +   G   VD  +   +KF+ L        R  G  AF++I EGC K+C+FCVVPYTRG 
Sbjct: 118 KETSGLSQVDISFPEIEKFDHLPPA-----RVEGGAAFVSIMEGCSKYCSFCVVPYTRGE 172

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR L+ V+ E   L   GV EI LLGQNVNA+RG+  DGE C F+ LL  + EI G+ 
Sbjct: 173 EFSRPLNDVLTEIANLAQQGVKEINLLGQNVNAYRGEMDDGEICDFATLLRIVHEIPGIE 232

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           RLR+TTSHPR+ +D +I+ + DL  L+ +LHLP+QSGSDR+L +M R +TA EY+ II +
Sbjct: 233 RLRFTTSHPREFTDAIIECYRDLPKLVSHLHLPIQSGSDRVLSAMKRGYTALEYKSIIRK 292

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R++RPD+ +SSDFIVGFPGET+ +F  T+ LV  I +  +F F YSPR GTP +N+ + 
Sbjct: 293 LRAIRPDLCLSSDFIVGFPGETEREFEQTLKLVKDIAFDLSFVFIYSPRPGTPAANLHDD 352

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVL 440
                K  RL  L + +  +    N   VG +   L+E    K+  +L  R+   + V  
Sbjct: 353 TPHEEKVRRLEALNEVIEAETAHINQTMVGTVQRCLVEGISKKDPDQLQARTANNRVVNF 412

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 I  +I + IT+    +L G+ V
Sbjct: 413 TGTPDMINQMIDLEITEAYTFSLRGKTV 440


>gi|89256244|ref|YP_513606.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Francisella
           tularensis subsp. holarctica LVS]
 gi|167010861|ref|ZP_02275792.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Francisella tularensis
           subsp. holarctica FSC200]
 gi|254367560|ref|ZP_04983586.1| conserved hypothetical protein yleA [Francisella tularensis subsp.
           holarctica 257]
 gi|123287306|sp|Q2A3U6|MIAB_FRATH RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|89144075|emb|CAJ79325.1| conserved hypothetical protein yleA [Francisella tularensis subsp.
           holarctica LVS]
 gi|134253376|gb|EBA52470.1| conserved hypothetical protein yleA [Francisella tularensis subsp.
           holarctica 257]
          Length = 442

 Score =  467 bits (1201), Expect = e-129,   Method: Composition-based stats.
 Identities = 189/447 (42%), Positives = 277/447 (61%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYER-VNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ F+K+ GCQMN YDS RM ++          +   DAD+I++NTC IREKA EKV+  
Sbjct: 5   KKVFIKTLGCQMNEYDSARMHEVLNEHFDTVKTDDYKDADIILINTCSIREKAQEKVFHE 64

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + +K    K   DL++ V GCVA  EGE I++R+P V++V GPQT +RLPE++++ 
Sbjct: 65  LGRWKGIK----KTNEDLIIGVGGCVASQEGENIIKRAPFVDLVFGPQTIHRLPEMIKQK 120

Query: 144 RFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           +  ++  VD  +   +KF+ L        +  G  A+++I EGCDK+C++CVVPYTRG E
Sbjct: 121 QKSQQSQVDISFPEVEKFDYLP-----EPKAEGAKAYVSIMEGCDKYCSYCVVPYTRGPE 175

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           ++R    V+ E   L + GV EITLLGQNVN + G   +G+    + L++ ++EI G+ R
Sbjct: 176 VNRPFEDVLAECAILAEQGVKEITLLGQNVNHYLGPMENGQTADLALLIHFIAEIDGIER 235

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP + S  LI A+  +  L  +LHLPVQ GSDRIL +M R HT  E++Q I ++
Sbjct: 236 IRFTTSHPVEFSQNLIDAYATVPELANHLHLPVQHGSDRILINMKRNHTILEFKQKIRKL 295

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R++RPDI ISSDFIVGFPGET++DF+  +DLV +I + Q+FSF YS R GTP +++ +  
Sbjct: 296 RAIRPDITISSDFIVGFPGETEEDFQKLLDLVKEINFDQSFSFIYSKRPGTPAADLPDDT 355

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLN 441
              VK +RL  LQ  L       +   VG    +L++    K+   L GR+   + V   
Sbjct: 356 PMEVKKDRLKRLQDLLNSNAQIISRQMVGTNQRILVDGTSKKDDNILSGRTENNRVVNFK 415

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                IG    V+IT+   ++L GEL+
Sbjct: 416 GDKSLIGQFAMVKITESLPNSLRGELI 442


>gi|309379482|emb|CBX21848.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 442

 Score =  467 bits (1201), Expect = e-129,   Method: Composition-based stats.
 Identities = 196/448 (43%), Positives = 279/448 (62%), Gaps = 13/448 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQ--GYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           ++ F++++GCQMN YDS +M  +   +  G E+V   DDAD+I+ NTC +REKA EKV+S
Sbjct: 2   KKVFIRTFGCQMNEYDSDKMLAVLAEEHGGIEQVTQPDDADIILFNTCSVREKAQEKVFS 61

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-E 141
            LGR+R LK         L++ VAGCVA  EGE I++R+P V+VV GPQT +RLP+++ +
Sbjct: 62  DLGRVRPLKEK----NPGLIIGVAGCVASQEGENIIKRAPYVDVVFGPQTLHRLPKMIVD 117

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           +   G   VD  +   +KF+ L        R  G  AF++I EGC K+C+FCVVPYTRG 
Sbjct: 118 KETSGLSQVDISFPEIEKFDHLPPA-----RVEGGAAFVSIMEGCSKYCSFCVVPYTRGE 172

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR L+ V+ E   L   GV EI LLGQNVNA+RG+  +GE C F+ LL  + EI G+ 
Sbjct: 173 EFSRPLNDVLTEIAGLAQQGVKEINLLGQNVNAYRGEMENGEICDFATLLRIVHEIPGIE 232

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHPR+ +D +I+ + DL  L+ +LHLP+QSGSDR+L +M R +TA EY+ II +
Sbjct: 233 RMRFTTSHPREFTDSIIECYRDLPKLVSHLHLPIQSGSDRVLSAMKRGYTALEYKSIIRK 292

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R++RPD+ +SSDFIVGFPGET+ +F  T+ LV  I +  +F F YSPR GTP +N+ + 
Sbjct: 293 LRAIRPDLCLSSDFIVGFPGETEREFEQTLKLVKDIAFDLSFVFIYSPRPGTPAANLPDD 352

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVL 440
                K  RL  L + +  +    N   VG +   L+E    K+  +L  R+   + V  
Sbjct: 353 TPHEEKVRRLEALNEVIEAETARINQTMVGTVQRCLVEGISKKDPDQLQARTANNRVVNF 412

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 I  +I + IT     +L G+ V
Sbjct: 413 TGTPDMINQMIDLEITGAYTFSLRGKTV 440


>gi|330960147|gb|EGH60407.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Pseudomonas
           syringae pv. maculicola str. ES4326]
          Length = 442

 Score =  467 bits (1201), Expect = e-129,   Method: Composition-based stats.
 Identities = 199/450 (44%), Positives = 284/450 (63%), Gaps = 13/450 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++ +++++GCQMN YDS RM D+    Q  E     +DAD+I+LNTC IRE+A ++VY
Sbjct: 1   MAKKLYIETHGCQMNEYDSSRMVDLLGEHQALEVTARAEDADVILLNTCSIRERAQDRVY 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S LGR R LK +      ++++ V GCVA  EG  I  R+P V+VV GPQT +RLPE+++
Sbjct: 61  SQLGRWRELKLA----NPEMVIAVGGCVASQEGAAIRDRAPYVDVVFGPQTLHRLPEMID 116

Query: 142 RARFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
            AR  +   VD  +   +KF+ L        R  G +A++++ EGC K+CTFCVVPYTRG
Sbjct: 117 AARITRLPQVDVSFPEIEKFDHLP-----EPRVDGPSAYVSVMEGCSKYCTFCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR    V+ E   L +NGV E+TLLGQNVN +RG   DG     +DL+  ++ + G+
Sbjct: 172 EEVSRPFDDVLSEVIHLAENGVREVTLLGQNVNGYRGTTHDGRVADLADLIRVVAAVDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+RYTTSHP + SD LI+AH ++  L+ +LHLPVQSGSDRIL +M R HT  EY+  + 
Sbjct: 232 DRIRYTTSHPLEFSDSLIQAHAEVPELVKHLHLPVQSGSDRILAAMKRNHTTLEYKSRLR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R+  P I+ISSDFIVGFPGET+ DF  TM L++ +G+  +FSF YSPR GTP +++ +
Sbjct: 292 KLRAAVPGISISSDFIVGFPGETEKDFDNTMKLIEDVGFDFSFSFIYSPRPGTPAADLQD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVV 439
              E +K ERL  LQ +L +Q    +   VG I  +L+  +  K+ G+L GR+   + V 
Sbjct: 352 DTPEALKKERLAALQHRLNQQGFEISRQMVGSIQRILVTDYSKKDPGELQGRTENNRIVN 411

Query: 440 LNSKNH-NIGDIIKVRITDVKISTLYGELV 468
               N   IG    V I D +  +L G L+
Sbjct: 412 FRCNNPKLIGQFADVHIDDAQPHSLRGSLL 441


>gi|66047572|ref|YP_237413.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Pseudomonas
           syringae pv. syringae B728a]
 gi|75500577|sp|Q4ZN97|MIAB_PSEU2 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|63258279|gb|AAY39375.1| Protein of unknown function UPF0004:tRNA-i(6)A37 modification
           enzyme MiaB [Pseudomonas syringae pv. syringae B728a]
 gi|330953005|gb|EGH53265.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Pseudomonas
           syringae Cit 7]
 gi|330969456|gb|EGH69522.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Pseudomonas
           syringae pv. aceris str. M302273PT]
          Length = 442

 Score =  467 bits (1201), Expect = e-129,   Method: Composition-based stats.
 Identities = 199/450 (44%), Positives = 284/450 (63%), Gaps = 13/450 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++ +++++GCQMN YDS RM D+    Q  E     +DAD+I+LNTC IRE+A ++VY
Sbjct: 1   MAKKLYIETHGCQMNEYDSSRMVDLLGEHQALEVTARAEDADVILLNTCSIRERAQDRVY 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S LGR R LK +      ++++ V GCVA  EG  I  R+P V+VV GPQT +RLPE+++
Sbjct: 61  SQLGRWRELKLA----NPEMVIAVGGCVASQEGAAIRDRAPYVDVVFGPQTLHRLPEMID 116

Query: 142 RARFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
            AR  +   VD  +   +KF+ L        R  G +A++++ EGC K+CTFCVVPYTRG
Sbjct: 117 AARVTRLPQVDVSFPEIEKFDHLP-----EPRVDGPSAYVSVMEGCSKYCTFCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR    V+ E   L +NGV E+TLLGQNVN +RG   DG     +DL+  ++ + G+
Sbjct: 172 EEVSRPFDDVLSEVIHLAENGVREVTLLGQNVNGYRGTTHDGRVADLADLIRVVAAVDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+RYTTSHP + SD LI+AH ++  L+ +LHLPVQSGSDRIL +M R HT  EY+  + 
Sbjct: 232 DRIRYTTSHPLEFSDSLIQAHAEVPELVKHLHLPVQSGSDRILAAMKRNHTTLEYKSRLR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R+  P I+ISSDFIVGFPGET+ DF  TM L++ +G+  +FSF YSPR GTP +++ +
Sbjct: 292 KLRAAVPGISISSDFIVGFPGETEKDFDNTMKLIEDVGFDFSFSFVYSPRPGTPAADLKD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVV 439
              E +K ERL  LQ +L +Q    +   VG I  +L+  +  K+ G+L GR+   + V 
Sbjct: 352 DTPEALKKERLAALQHRLNQQGFEISRQMVGSIQRILVTDYSKKDPGELQGRTENNRIVN 411

Query: 440 LNSKNH-NIGDIIKVRITDVKISTLYGELV 468
               N   IG    V I D +  +L G L+
Sbjct: 412 FRCDNPKLIGQFADVHIDDAQPHSLRGSLL 441


>gi|302185143|ref|ZP_07261816.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Pseudomonas
           syringae pv. syringae 642]
          Length = 442

 Score =  467 bits (1201), Expect = e-129,   Method: Composition-based stats.
 Identities = 198/450 (44%), Positives = 284/450 (63%), Gaps = 13/450 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++ +++++GCQMN YDS RM D+    Q  E     +DAD+I+LNTC IRE+A ++VY
Sbjct: 1   MAKKLYIETHGCQMNEYDSSRMVDLLGEHQALEVTARAEDADVILLNTCSIRERAQDRVY 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S LGR R LK +      ++++ V GCVA  EG  I  R+P V+VV GPQT +RLPE+++
Sbjct: 61  SQLGRWRELKLA----NPEMVIAVGGCVASQEGAAIRDRAPYVDVVFGPQTLHRLPEMID 116

Query: 142 RARFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
            AR  +   VD  +   +KF+ L        R  G +A++++ EGC K+CTFCVVPYTRG
Sbjct: 117 AARVTRLPQVDVSFPEIEKFDHLP-----EPRVDGPSAYVSVMEGCSKYCTFCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR    V+ E   L +NGV E+TLLGQNVN +RG   DG     +DL+  ++ + G+
Sbjct: 172 EEVSRPFDDVLSEVIHLAENGVREVTLLGQNVNGYRGTTHDGRVADLADLIRVVAAVDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+RYTTSHP + SD LI+AH ++  L+ +LHLPVQSGSDRIL +M R HT  EY+  + 
Sbjct: 232 DRIRYTTSHPLEFSDSLIQAHAEVPELVKHLHLPVQSGSDRILAAMKRNHTTLEYKSRLR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R+  P I+ISSDFIVGFPGET+ DF  TM L++ +G+  +FSF YSPR GTP +++ +
Sbjct: 292 KLRAAVPGISISSDFIVGFPGETEKDFDNTMKLIEDVGFDFSFSFVYSPRPGTPAADLKD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVV 439
              E +K ERL  LQ +L +Q    +   VG I  +L+  +  K+ G+L GR+   + V 
Sbjct: 352 DTPEALKKERLAALQHRLNQQGFEISRQMVGSIQRILVTDYSKKDPGELQGRTENNRIVN 411

Query: 440 LN-SKNHNIGDIIKVRITDVKISTLYGELV 468
              +    IG    V I D +  +L G L+
Sbjct: 412 FRCANPKLIGQFADVHIDDAQPHSLRGSLL 441


>gi|254787739|ref|YP_003075168.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Teredinibacter
           turnerae T7901]
 gi|237686553|gb|ACR13817.1| isopentenyl-adenosine A37 tRNA methylthiotransferase
           [Teredinibacter turnerae T7901]
          Length = 451

 Score =  467 bits (1201), Expect = e-129,   Method: Composition-based stats.
 Identities = 200/455 (43%), Positives = 285/455 (62%), Gaps = 14/455 (3%)

Query: 18  VDQCIVPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKA 76
           + + I  ++ F++++GCQMN YDS RM+D+   S      ++ D+AD++++NTC IREKA
Sbjct: 1   MSEEITTKKLFIQTHGCQMNEYDSARMQDLLGASHQMVPTDNPDEADVLLVNTCSIREKA 60

Query: 77  AEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL 136
            +K++  LGR ++LK        +L++ V GCVA  EGE I +R+P V+++ GPQT +RL
Sbjct: 61  QDKLFHQLGRWKHLKEK----NPELIIGVGGCVASQEGENIAKRAPFVDLIFGPQTLHRL 116

Query: 137 PELLERARF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
           PE++E  R  G  VVD  +   +KF+RL           G TAF+++ EGC K+CTFCVV
Sbjct: 117 PEMIETPRENGAVVVDISFPEIEKFDRLP-----EPEADGATAFVSVMEGCSKYCTFCVV 171

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
           PYTRG E+SR    V+ E   L   GV EI LLGQNVNA+RG G DG     ++L+  ++
Sbjct: 172 PYTRGEEVSRPARDVLKECAHLAGQGVREINLLGQNVNAYRGDGPDG-VVDLAELITLVA 230

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
           +I G+ R+R+TTSHP + +D LI  + ++  L+ +LHLPVQSGSDRIL +M R HTA EY
Sbjct: 231 KIDGIDRIRFTTSHPVEFTDSLIDVYAEVPELVSHLHLPVQSGSDRILMAMKRGHTALEY 290

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
           +  + RIR  RPDI  SSDFIVGFPGETD DF ATM L+  IG+  +FSF YS R GTP 
Sbjct: 291 KSKMRRIRQARPDICFSSDFIVGFPGETDADFEATMKLIADIGFDMSFSFIYSSRPGTPA 350

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPW 434
           ++M +   + VK +RL  LQ+++ +Q    +   VG    VL+  +  K+ G+L GR+  
Sbjct: 351 ADMKDDTPQEVKKQRLALLQQRINQQSQDISRKMVGNTERVLVTGYSKKDPGQLSGRTEN 410

Query: 435 LQSVVLNSKN-HNIGDIIKVRITDVKISTLYGELV 468
            + V         IG    V I +   ++L G L+
Sbjct: 411 NRVVNFRCDQAELIGKFADVLIEEALPNSLRGILL 445


>gi|218767554|ref|YP_002342066.1| hypothetical protein NMA0590 [Neisseria meningitidis Z2491]
 gi|229890575|sp|A1IQ34|MIAB_NEIMA RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|121051562|emb|CAM07860.1| hypothetical protein NMA0590 [Neisseria meningitidis Z2491]
          Length = 442

 Score =  466 bits (1200), Expect = e-129,   Method: Composition-based stats.
 Identities = 195/448 (43%), Positives = 281/448 (62%), Gaps = 13/448 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQ--GYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           ++ F++++GCQMN YDS +M  +   +  G E+V   D+AD+I+ NTC +REKA EKV+S
Sbjct: 2   KKVFIRTFGCQMNEYDSDKMLAVLAEEHGGIEQVTQADEADIILFNTCSVREKAQEKVFS 61

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-E 141
            LGR+R LK         L++ VAGCVA  EGE I++R+P V+VV GPQT +RLP+++ +
Sbjct: 62  DLGRVRPLKEK----KPGLIIGVAGCVASQEGENIIKRAPYVDVVFGPQTLHRLPKMIVD 117

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           +   G   VD  +   +KF+ L        R  G  AF++I EGC K+C+FCVVPYTRG 
Sbjct: 118 KETSGLSQVDISFPEIEKFDHLPPA-----RVEGGAAFVSIMEGCSKYCSFCVVPYTRGE 172

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR L+ V+ E   L   GV EI LLGQNVNA+RG+  DGE C F+ LL  + EI G+ 
Sbjct: 173 EFSRPLNDVLTEIANLAQQGVKEINLLGQNVNAYRGEMDDGEICDFATLLRIVHEIPGIE 232

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHPR+ +D +I+ + DL  L+ +LHLP+QSGSDR+L +M R +TA EY+ II +
Sbjct: 233 RMRFTTSHPREFTDSIIECYRDLPKLVSHLHLPIQSGSDRVLSAMKRGYTALEYKSIIRK 292

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R++RPD+ +SSDFIVGFPGET+ +F  T+ LV  I +  +F F YSPR GTP +N+ + 
Sbjct: 293 LRAIRPDLCLSSDFIVGFPGETEREFEQTLKLVKDIAFDLSFVFIYSPRPGTPAANLHDD 352

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVL 440
                K  RL  L + +  +    N   +G +   L+E    K+  +L  R+   + V  
Sbjct: 353 TPHEEKVRRLEALNEVIEAETARINQTMIGTVQRCLVEGISKKDPDQLQARTANNRVVNF 412

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 I  +I + IT+    +L G++V
Sbjct: 413 TGTPDMINQMIDLEITEAYTFSLRGKIV 440


>gi|332982488|ref|YP_004463929.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Mahella australiensis
           50-1 BON]
 gi|332700166|gb|AEE97107.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Mahella australiensis
           50-1 BON]
          Length = 443

 Score =  466 bits (1200), Expect = e-129,   Method: Composition-based stats.
 Identities = 173/446 (38%), Positives = 263/446 (58%), Gaps = 13/446 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++F + +YGCQMN +DS +M  +    GYE       AD+I+ NTC +RE A ++VY  +
Sbjct: 4   KKFTIVTYGCQMNEHDSEKMAGILSDMGYEWTEDKAGADIILFNTCCVREHAEQRVYGNI 63

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G ++ LK        DL++ V GC+ Q EG  +++ +  P V+++ G      LP+L++ 
Sbjct: 64  GMLKPLKQ----VNPDLIIGVCGCMMQQEGMAQKLAQTFPFVDIIFGTHNLNELPKLIDE 119

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           A+  +  V   +  + +F+    +     R   V+A++T+  GC+ FCT+C+VPY RG E
Sbjct: 120 AKASRFTVVDIHEQDHEFDESMPIR----RASKVSAWVTVMYGCNNFCTYCIVPYVRGRE 175

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR    +V+E ++L D G  EITLLGQNVN+  GK  D EK  F+DLL  L +I+G+ R
Sbjct: 176 HSRRPDDIVNEVKELADQGYKEITLLGQNVNS-YGKDSD-EKVEFADLLRMLDDIEGVER 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP+D+SD LI A  D   +   LHLPVQSGS RIL+ MNR +T   Y +++++I
Sbjct: 234 IRFTTSHPKDLSDNLIYAMRDCKKVCHQLHLPVQSGSTRILRRMNRHYTKEGYLELVEKI 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           ++  PDIA+S+D IVGFPGETD+DF  T+D+V +  Y  A++F YS R GTP + + +  
Sbjct: 294 KANIPDIALSTDIIVGFPGETDEDFEDTLDVVRRAQYDLAYTFIYSKRSGTPAAKLEDPT 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRSPWLQSVVLN 441
              +K +RL  L           N    G ++EVL+E   +  KG+++GR+   + V   
Sbjct: 354 PREIKQQRLQRLIDLQTAITREKNQRLNGAVVEVLVEGPSRNGKGQMMGRTTGNKVVNFE 413

Query: 442 SKNHNIGDIIKVRITDVKISTLYGEL 467
                IG ++ V IT+     L G L
Sbjct: 414 GNASLIGKLVDVLITEPSTWFLNGRL 439


>gi|330963484|gb|EGH63744.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Pseudomonas
           syringae pv. actinidiae str. M302091]
          Length = 442

 Score =  466 bits (1200), Expect = e-129,   Method: Composition-based stats.
 Identities = 199/450 (44%), Positives = 284/450 (63%), Gaps = 13/450 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++ +++++GCQMN YDS RM D+    Q  E     +DAD+I+LNTC IRE+A ++VY
Sbjct: 1   MAKKLYIETHGCQMNEYDSSRMVDLLGEHQALEVTARAEDADVILLNTCSIRERAQDRVY 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S LGR R LK +      ++++ V GCVA  EG  I  R+P V+VV GPQT +RLPE+++
Sbjct: 61  SQLGRWRELKLA----NPEMVIAVGGCVASQEGAAIRDRAPYVDVVFGPQTLHRLPEMID 116

Query: 142 RARFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
            AR  +   VD  +   +KF+ L        R  G +A++++ EGC K+CTFCVVPYTRG
Sbjct: 117 AARITRLPQVDVSFPEIEKFDHLP-----EPRVDGPSAYVSVMEGCSKYCTFCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR    V+ E   L ++GV E+TLLGQNVN +RG   DG     +DL+ +++ + G+
Sbjct: 172 EEVSRPFDDVLTEVTHLAEHGVREVTLLGQNVNGYRGTTYDGRVADLADLIRAVAVVDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+RYTTSHP + SD LI+AH D+  L+ +LHLPVQSGSDRIL +M R HT  EY+  + 
Sbjct: 232 DRIRYTTSHPLEFSDSLIQAHADVPELVKHLHLPVQSGSDRILAAMKRNHTTLEYKSRLR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R+  P I+ISSDFIVGFPGET+ DF  TM L++  G+  +FSF YSPR GTP +++ +
Sbjct: 292 KLRAAVPGISISSDFIVGFPGETEKDFDNTMKLIEDAGFDFSFSFIYSPRPGTPAADLKD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVV 439
              E +K ERL  LQ +L +Q    +   VG I  +L+  +  K+ G+L GR+   + V 
Sbjct: 352 DTPEALKKERLAALQHRLNQQGFEISRQMVGSIQRILVTDYSKKDPGELQGRTENNRIVN 411

Query: 440 LNSKNH-NIGDIIKVRITDVKISTLYGELV 468
               N   IG    V I D +  +L G L+
Sbjct: 412 FRCDNPRLIGQFADVHIDDAQPHSLRGSLL 441


>gi|28871919|ref|NP_794538.1| tRNA-i(6)A37 modification enzyme MiaB [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|81729456|sp|Q87VY1|MIAB_PSESM RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|28855172|gb|AAO58233.1| tRNA-i(6)A37 modification enzyme MiaB [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|330873559|gb|EGH07708.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Pseudomonas
           syringae pv. morsprunorum str. M302280PT]
          Length = 442

 Score =  466 bits (1200), Expect = e-129,   Method: Composition-based stats.
 Identities = 199/450 (44%), Positives = 284/450 (63%), Gaps = 13/450 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++ +++++GCQMN YDS RM D+    Q  E     +DAD+I+LNTC IRE+A ++VY
Sbjct: 1   MAKKLYIETHGCQMNEYDSSRMVDLLGEHQALEVTARAEDADVILLNTCSIRERAQDRVY 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S LGR R LK +      ++++ V GCVA  EG  I  R+P V+VV GPQT +RLPE+++
Sbjct: 61  SQLGRWRELKLA----NPEMVIAVGGCVASQEGAAIRDRAPYVDVVFGPQTLHRLPEMID 116

Query: 142 RARFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
            AR  +   VD  +   +KF+ L        R  G +A++++ EGC K+CTFCVVPYTRG
Sbjct: 117 AARITRLPQVDVSFPEIEKFDHLP-----EPRVDGPSAYVSVMEGCSKYCTFCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR    V+ E   L ++GV E+TLLGQNVN +RG   DG     +DL+ +++ + G+
Sbjct: 172 EEVSRPFDDVLTEVTHLAEHGVREVTLLGQNVNGYRGTTHDGRVADLADLIRAVAVVDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+RYTTSHP + SD LI+AH D+  L+ +LHLPVQSGSDRIL +M R HT  EY+  + 
Sbjct: 232 DRIRYTTSHPLEFSDSLIQAHADVPELVKHLHLPVQSGSDRILAAMKRNHTTLEYKSRLR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R+  P I+ISSDFIVGFPGET+ DF  TM L++  G+  +FSF YSPR GTP +++ +
Sbjct: 292 KLRAAVPGISISSDFIVGFPGETEKDFDNTMKLIEDAGFDFSFSFIYSPRPGTPAADLKD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVV 439
              E +K ERL  LQ +L +Q    +   VG I  +L+  +  K+ G+L GR+   + V 
Sbjct: 352 DTPEALKKERLAALQHRLNQQGFEISRQMVGSIQRILVTDYSKKDPGELQGRTENNRIVN 411

Query: 440 LNSKNH-NIGDIIKVRITDVKISTLYGELV 468
               N   IG    V I D +  +L G L+
Sbjct: 412 FRCDNPRLIGQFADVHIDDAQPHSLRGSLL 441


>gi|257482205|ref|ZP_05636246.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 442

 Score =  466 bits (1200), Expect = e-129,   Method: Composition-based stats.
 Identities = 199/450 (44%), Positives = 284/450 (63%), Gaps = 13/450 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++ +++++GCQMN YDS RM D+    Q  E     +DAD+I+LNTC IRE+A ++VY
Sbjct: 1   MAKKLYIETHGCQMNEYDSSRMVDLLGEHQALEVTARAEDADVILLNTCSIRERAQDRVY 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S LGR R LK +      ++++ V GCVA  EG  I  R+P V+VV GPQT +RLPE+++
Sbjct: 61  SQLGRWRELKLA----NPEMVIAVGGCVASQEGAAIRDRAPYVDVVFGPQTLHRLPEMID 116

Query: 142 RARFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
            AR  +   VD  +   +KF+ L        R  G +A++++ EGC K+CTFCVVPYTRG
Sbjct: 117 AARITRLPQVDVSFPEIEKFDHLP-----EPRVDGPSAYVSVMEGCSKYCTFCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR    V+ E   L +NGV E+TLLGQNVN +RG   DG     +DL+  ++ + G+
Sbjct: 172 EEVSRPFDDVLSEVIHLAENGVREVTLLGQNVNGYRGTTHDGRVADLADLIRVVAAVDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+RYTTSHP + SD LI+AH ++  L+ +LHLPVQSGSDRIL +M R HT  EY+  + 
Sbjct: 232 DRIRYTTSHPLEFSDSLIQAHAEVPELVKHLHLPVQSGSDRILAAMKRNHTTLEYKSRLR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R+  P I+ISSDFIVGFPGET+ DF  TM L++ +G+  +FSF YSPR GTP +++ +
Sbjct: 292 KLRAAVPGISISSDFIVGFPGETEKDFDNTMKLIEDVGFDFSFSFVYSPRPGTPAADLKD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVV 439
              E +K ERL  LQ +L +Q    +   VG I  +L+  +  K+ G+L GR+   + V 
Sbjct: 352 DTPEALKKERLAALQHRLNQQGFEISRQMVGSIQRILVTDYSKKDPGELQGRTENNRIVN 411

Query: 440 LNSKNH-NIGDIIKVRITDVKISTLYGELV 468
               N   IG    V I D +  +L G L+
Sbjct: 412 FRCNNPKLIGQFANVHIDDAQPHSLRGSLL 441


>gi|298489005|ref|ZP_07007028.1| tRNA-i(6)A37 methylthiotransferase [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298156503|gb|EFH97600.1| tRNA-i(6)A37 methylthiotransferase [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 442

 Score =  466 bits (1200), Expect = e-129,   Method: Composition-based stats.
 Identities = 199/450 (44%), Positives = 284/450 (63%), Gaps = 13/450 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++ +++++GCQMN YDS RM D+    Q  E     +DAD+I+LNTC IRE+A ++VY
Sbjct: 1   MTKKLYIETHGCQMNEYDSSRMVDLLGEHQALEVTARAEDADVILLNTCSIRERAQDRVY 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S LGR R LK +      ++++ V GCVA  EG  I  R+P V+VV GPQT +RLPE+++
Sbjct: 61  SQLGRWRELKLA----NPEMVIAVGGCVASQEGAAIRDRAPYVDVVFGPQTLHRLPEMID 116

Query: 142 RARFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
            AR  +   VD  +   +KF+ L        R  G +A++++ EGC K+CTFCVVPYTRG
Sbjct: 117 AARITRLPQVDVSFPEIEKFDHLP-----EPRVDGPSAYVSVMEGCSKYCTFCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR    V+ E   L +NGV E+TLLGQNVN +RG   DG     +DL+  ++ + G+
Sbjct: 172 EEVSRPFDDVLSEVIHLAENGVREVTLLGQNVNGYRGTTHDGRVADLADLIRVVAAVDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+RYTTSHP + SD LI+AH ++  L+ +LHLPVQSGSDRIL +M R HT  EY+  + 
Sbjct: 232 DRIRYTTSHPLEFSDSLIQAHAEVPELVKHLHLPVQSGSDRILAAMKRNHTTLEYKSRLR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R+  P I+ISSDFIVGFPGET+ DF  TM L++ +G+  +FSF YSPR GTP +++ +
Sbjct: 292 KLRAAVPGISISSDFIVGFPGETEKDFDNTMKLIEDVGFDFSFSFVYSPRPGTPAADLKD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVV 439
              E +K ERL  LQ +L +Q    +   VG I  +L+  +  K+ G+L GR+   + V 
Sbjct: 352 DTPEALKKERLAALQHRLNQQGFEISRQMVGSIQRILVTDYSKKDPGELQGRTENNRIVN 411

Query: 440 LNSKNH-NIGDIIKVRITDVKISTLYGELV 468
               N   IG    V I D +  +L G L+
Sbjct: 412 FRCNNPKLIGQFADVHIDDAQPHSLRGSLL 441


>gi|71735074|ref|YP_276503.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Pseudomonas
           syringae pv. phaseolicola 1448A]
 gi|289625797|ref|ZP_06458751.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Pseudomonas
           syringae pv. aesculi str. NCPPB3681]
 gi|289648418|ref|ZP_06479761.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Pseudomonas
           syringae pv. aesculi str. 2250]
 gi|123635051|sp|Q48DN8|MIAB_PSE14 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|71555627|gb|AAZ34838.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|330867193|gb|EGH01902.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Pseudomonas
           syringae pv. aesculi str. 0893_23]
 gi|330871081|gb|EGH05790.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Pseudomonas
           syringae pv. aesculi str. 0893_23]
 gi|330987620|gb|EGH85723.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Pseudomonas
           syringae pv. lachrymans str. M301315]
          Length = 442

 Score =  466 bits (1200), Expect = e-129,   Method: Composition-based stats.
 Identities = 199/450 (44%), Positives = 284/450 (63%), Gaps = 13/450 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++ +++++GCQMN YDS RM D+    Q  E     +DAD+I+LNTC IRE+A ++VY
Sbjct: 1   MAKKLYIETHGCQMNEYDSSRMVDLLGEHQALEVTARAEDADVILLNTCSIRERAQDRVY 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S LGR R LK +      ++++ V GCVA  EG  I  R+P V+VV GPQT +RLPE+++
Sbjct: 61  SQLGRWRELKLA----NPEMVIAVGGCVASQEGAAIRDRAPYVDVVFGPQTLHRLPEMID 116

Query: 142 RARFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
            AR  +   VD  +   +KF+ L        R  G +A++++ EGC K+CTFCVVPYTRG
Sbjct: 117 AARITRLPQVDVSFPEIEKFDHLP-----EPRVDGPSAYVSVMEGCSKYCTFCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR    V+ E   L +NGV E+TLLGQNVN +RG   DG     +DL+  ++ + G+
Sbjct: 172 EEVSRPFDDVLSEVIHLAENGVREVTLLGQNVNGYRGTTHDGRVADLADLIRVVAAVDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+RYTTSHP + SD LI+AH ++  L+ +LHLPVQSGSDRIL +M R HT  EY+  + 
Sbjct: 232 DRIRYTTSHPLEFSDSLIQAHAEVPELVKHLHLPVQSGSDRILAAMKRNHTTLEYKSRLR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R+  P I+ISSDFIVGFPGET+ DF  TM L++ +G+  +FSF YSPR GTP +++ +
Sbjct: 292 KLRAAVPGISISSDFIVGFPGETEKDFDNTMKLIEDVGFDFSFSFVYSPRPGTPAADLKD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVV 439
              E +K ERL  LQ +L +Q    +   VG I  +L+  +  K+ G+L GR+   + V 
Sbjct: 352 DTPEALKKERLAALQHRLNQQGFEISRQMVGSIQRILVTDYSKKDPGELQGRTENNRIVN 411

Query: 440 LNSKNH-NIGDIIKVRITDVKISTLYGELV 468
               N   IG    V I D +  +L G L+
Sbjct: 412 FRCNNPKLIGQFADVHIDDAQPHSLRGSLL 441


>gi|319940867|ref|ZP_08015206.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Sutterella wadsworthensis 3_1_45B]
 gi|319805749|gb|EFW02530.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Sutterella wadsworthensis 3_1_45B]
          Length = 442

 Score =  466 bits (1199), Expect = e-129,   Method: Composition-based stats.
 Identities = 210/447 (46%), Positives = 293/447 (65%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ +++S+GCQMN YDS R+ D+   +   E+   +++AD++VLNTC IREKA EKV+S 
Sbjct: 4   KKLYLRSFGCQMNDYDSNRIVDLLGEAMQLEKTEDLNEADVVVLNTCSIREKAQEKVFSD 63

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-ER 142
           LGRIR  K    ++  D+++ V GCVA  EG  I++R+P V+VV GPQT +RLPE+L ER
Sbjct: 64  LGRIREAK----RDRPDMMIAVGGCVASQEGAGIVKRAPWVDVVFGPQTMHRLPEMLGER 119

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           AR GK  VD  +   +KF+ L        R  G  AF++I EGC K+CT+CVVPYTRG E
Sbjct: 120 ARTGKPQVDVSFPEIEKFDHLP-----APRAEGAAAFVSIMEGCSKYCTYCVVPYTRGEE 174

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           ISR L  V+ E  +L D GV E+TLLGQNVNA+RG   +G+   F+ LL  +SEI G+ R
Sbjct: 175 ISRPLVDVLVEVAQLADQGVKEVTLLGQNVNAYRGVTPEGDTADFAMLLEYVSEIDGIER 234

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +RYTTSHPR+ +  LI A+  L  L+ ++HLPVQ+GSDRIL +M R ++  EY+ II R+
Sbjct: 235 IRYTTSHPREFTQRLIDAYTKLPKLVSHVHLPVQAGSDRILTAMKRGYSVLEYKSIIRRL 294

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           ++ RP IAI++DFIVGFPGET +DF  TM L+D +G+  +FSF YSPR GTP + + ++ 
Sbjct: 295 KAARPGIAIATDFIVGFPGETAEDFEKTMRLIDDVGFDASFSFVYSPRPGTPAARLPDET 354

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRSPWLQSVVLN 441
             +VK ERL  LQ+K+ +     +   +G+I  VL+    +  +G L  R+   + V   
Sbjct: 355 PYSVKLERLQRLQRKIDDNAAEISRNMLGKIERVLVVGPARRGEGMLSARTDNNRIVNFA 414

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                I  +  VRIT+V   TL GELV
Sbjct: 415 GDPSLINQMTNVRITEVFPHTLGGELV 441


>gi|78484818|ref|YP_390743.1| tRNA-i(6)A37 modification enzyme MiaB [Thiomicrospira crunogena
           XCL-2]
 gi|123741657|sp|Q31IF4|MIAB_THICR RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|78363104|gb|ABB41069.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Thiomicrospira crunogena
           XCL-2]
          Length = 477

 Score =  466 bits (1199), Expect = e-129,   Method: Composition-based stats.
 Identities = 186/457 (40%), Positives = 282/457 (61%), Gaps = 23/457 (5%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
            F+K+YGCQMN YDS RM  +     G   V + ++AD+++LNTC +REKA EKV+  LG
Sbjct: 15  LFIKTYGCQMNEYDSDRMAKLLEKTYGLNLVETPEEADMLLLNTCSVREKAQEKVFDELG 74

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR- 144
           R +  K +      + ++ V GCVA  EG+ I +R+P+V+V+ GPQT +RLP ++E A  
Sbjct: 75  RWKKWKAA----KPNRVIGVGGCVASQEGDVIRKRAPLVDVIFGPQTLHRLPAMIEEALA 130

Query: 145 -----------FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC 193
                        + ++D  +   +KF+ L+          GV+AF+++ EGC K+CTFC
Sbjct: 131 LRTATEQDKKLKKRAIIDISFPEIEKFDNLA-----EPESNGVSAFVSVMEGCSKYCTFC 185

Query: 194 VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS 253
           VVPYTRG E SR  S V+ E   L   GV E+ LLGQNVNA+RG+  DGE    + L+++
Sbjct: 186 VVPYTRGEEFSRPFSDVMAEIESLAKQGVREVNLLGQNVNAYRGEMPDGEMADLAVLIHA 245

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
           +  ++G+ R+R+TTSHP +M+  LI  + ++  L+ +LHLP+QSGSDR+L  M R H A 
Sbjct: 246 VRAVEGIDRIRFTTSHPNEMTQSLIDCYAEVPELVSHLHLPIQSGSDRVLAMMKRNHMAI 305

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
           EY+  I +I+ +RPD+++S DFI+GFPGET DDF+ T+ LV ++ Y ++FSF YSPR GT
Sbjct: 306 EYKATIRKIKKIRPDLSLSGDFIIGFPGETCDDFKETLALVKEMNYDRSFSFIYSPRPGT 365

Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRS 432
           P +++ + V+ ++K  RL  LQ  L EQ  + ++  VG    VL+E+  +    ++ GR+
Sbjct: 366 PAASLPDDVELHMKKRRLQALQAMLNEQTAAISEGMVGTTQRVLVERLSRNSTNEVSGRT 425

Query: 433 PWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
              + V        IG  + V I +   ++L G+LV 
Sbjct: 426 ENNRVVNFEGPPELIGQFVDVLIEEAYANSLKGKLVA 462


>gi|73540220|ref|YP_294740.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Ralstonia eutropha
           JMP134]
 gi|123746634|sp|Q475N7|MIAB_RALEJ RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|72117633|gb|AAZ59896.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Ralstonia eutropha
           JMP134]
          Length = 450

 Score =  466 bits (1199), Expect = e-129,   Method: Composition-based stats.
 Identities = 202/456 (44%), Positives = 288/456 (63%), Gaps = 20/456 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ FVK+YGCQMN YDS +M D+   SQG E  ++++DAD+I+ NTC +REKA EKV+S 
Sbjct: 2   KKVFVKTYGCQMNEYDSDKMVDVLNASQGLEPTDNVEDADVILFNTCSVREKAQEKVFSE 61

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER- 142
           LGR++ LK        DL++ V GCVA  EG  I+ R+P V+VV GPQT +RLP+L+ R 
Sbjct: 62  LGRMKALKA----VKPDLVIGVGGCVASQEGASIVSRAPYVDVVFGPQTLHRLPDLIARR 117

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            R G+  VD  +   +KF+ L        R  G +AF++I EGC K+C++CVVPYTRG E
Sbjct: 118 QRTGQSQVDISFPEIEKFDHLPPA-----RVEGPSAFVSIMEGCSKYCSYCVVPYTRGEE 172

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG-KGLDGEKCTFSDLLYSLSEIKGLV 261
           +SR    V+ E   L + GV E+TLLGQNVNA+RG  G   E   F+ L+  ++EI G+ 
Sbjct: 173 VSRPFEDVLAEVAGLAEQGVREVTLLGQNVNAYRGAMGGTSEIADFALLIEYVAEIPGIE 232

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+RYTTSHP++ +  L++ +G  D L+ +LHLPVQ  SDR+L +M R ++  EY+ II R
Sbjct: 233 RIRYTTSHPKEFTSRLVELYGRCDKLVNHLHLPVQHASDRVLMAMKRGYSVLEYKSIIRR 292

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R +RPD+++SSDFIVGFPGETD DF   M L++++GY  +FSF +SPR GTP +N+ + 
Sbjct: 293 LRMLRPDMSMSSDFIVGFPGETDADFDKLMALIEEVGYDTSFSFIFSPRPGTPAANLHDD 352

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVL 440
               VK  RL  LQ  + E     +   VG +  +L+E    K+  +L GR+   + V  
Sbjct: 353 TPHEVKLRRLQHLQATIEENVQRISRNMVGSVQRILVEGPSRKDPTELHGRTENNRVVNF 412

Query: 441 -------NSKNHNIGDIIKVRITDVKISTLYGELVV 469
                    ++  IG ++ V IT     +L GE+VV
Sbjct: 413 ALPGVPQAQRDRMIGQMVDVSITQAFPHSLRGEIVV 448


>gi|213966835|ref|ZP_03394986.1| tRNA-i(6)A37 modification enzyme MiaB [Pseudomonas syringae pv.
           tomato T1]
 gi|301381966|ref|ZP_07230384.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Pseudomonas
           syringae pv. tomato Max13]
 gi|302058774|ref|ZP_07250315.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Pseudomonas
           syringae pv. tomato K40]
 gi|302135150|ref|ZP_07261140.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Pseudomonas
           syringae pv. tomato NCPPB 1108]
 gi|213928685|gb|EEB62229.1| tRNA-i(6)A37 modification enzyme MiaB [Pseudomonas syringae pv.
           tomato T1]
          Length = 442

 Score =  466 bits (1199), Expect = e-129,   Method: Composition-based stats.
 Identities = 198/450 (44%), Positives = 284/450 (63%), Gaps = 13/450 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++ +++++GCQMN YDS RM D+    Q  E     +DAD+I+LNTC IRE+A ++VY
Sbjct: 1   MAKKLYIETHGCQMNEYDSSRMVDLLGEHQALEVTARAEDADVILLNTCSIRERAQDRVY 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S LGR R LK +      ++++ V GCVA  EG  I  R+P V+VV GPQT +RLPE+++
Sbjct: 61  SQLGRWRELKLA----NPEMVIAVGGCVASQEGAAIRDRAPYVDVVFGPQTLHRLPEMID 116

Query: 142 RARFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
            AR  +   VD  +   +KF+ L        R  G +A++++ EGC K+CTFCVVPYTRG
Sbjct: 117 AARITRLPQVDVSFPEIEKFDHLP-----EPRVDGPSAYVSVMEGCSKYCTFCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR    V+ E   L ++GV E+TLLGQNVN +RG   DG     +DL+ +++ + G+
Sbjct: 172 EEVSRPFDDVLTEVTHLAEHGVREVTLLGQNVNGYRGTTHDGRVADLADLIRAVAVVDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+RYTTSHP + SD LI+AH D+  L+ +LHLPVQSGSDRIL +M R HT  EY+  + 
Sbjct: 232 DRIRYTTSHPLEFSDSLIQAHADVPELVKHLHLPVQSGSDRILAAMKRNHTTLEYKSRLR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R+  P I+ISSDFIVGFPGET+ DF  TM L++  G+  +FSF YSPR GTP +++ +
Sbjct: 292 KLRAAVPGISISSDFIVGFPGETEKDFDNTMKLIEDAGFDFSFSFIYSPRPGTPAADLKD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVV 439
              E +K ERL  LQ +L +Q    +   VG I  +L+  +  K+ G+L GR+   + V 
Sbjct: 352 DTPEALKKERLAALQHRLNQQGFEISRQMVGSIQRILVTDYSKKDPGELQGRTENNRIVN 411

Query: 440 LN-SKNHNIGDIIKVRITDVKISTLYGELV 468
              +    IG    V I D +  +L G L+
Sbjct: 412 FRCNNPRLIGQFADVHIDDAQPHSLRGSLL 441


>gi|332530355|ref|ZP_08406300.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Hylemonella
           gracilis ATCC 19624]
 gi|332040166|gb|EGI76547.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Hylemonella
           gracilis ATCC 19624]
          Length = 463

 Score =  465 bits (1198), Expect = e-129,   Method: Composition-based stats.
 Identities = 192/455 (42%), Positives = 281/455 (61%), Gaps = 26/455 (5%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ F+K++GCQMN YDS +M D+   +QGYE+ + ++ ADLI+ NTC +REKA EKV+S 
Sbjct: 18  KKVFIKTFGCQMNEYDSDKMADVLGAAQGYEKTDDVEQADLILFNTCSVREKAQEKVFSD 77

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR+++LK   +K      + V GCVA  EGE I+ R+P V+VV GPQT +RLPELL   
Sbjct: 78  LGRVQHLKAKGVK------IGVGGCVASQEGEAIIARAPYVDVVFGPQTLHRLPELLNAR 131

Query: 144 RFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
              +R  VD  +   +KF+ L        R  G +AF++I EGC K+C++CVVPYTRG E
Sbjct: 132 EATRRPQVDISFPEIEKFDHLPPA-----RTEGASAFVSIMEGCSKYCSYCVVPYTRGEE 186

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           + R L  V+ E   L   GV EITLLGQNVNAW   GLD     F+ L+  +SE+ G+ R
Sbjct: 187 VHRPLDDVLTEVAGLAAQGVKEITLLGQNVNAWVKDGLD-----FAGLIELVSEMPGIER 241

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +RYTTSHP++ +  LI+A+  +  L+ +LHLPVQ GSDRIL +M R +TA EY+  + ++
Sbjct: 242 IRYTTSHPKEFTPRLIEAYARIPKLVSHLHLPVQHGSDRILMAMKRGYTALEYKSTVRKL 301

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+ RPD+A+++D IVGFPGET+DD   T+ L++ + +  +FSF YSPR GTP +N+ +  
Sbjct: 302 RAARPDLALATDLIVGFPGETEDDHAKTLKLIEDMEFDNSFSFIYSPRPGTPAANLQDDT 361

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441
             +VK  RL  +Q  +       +   VG    +L+E   ++   +L G++   ++V   
Sbjct: 362 PHDVKLRRLQEVQALIEGNMRRLSQKLVGTTQRILVEGPSRKNPNELTGKTVCNRAVNFA 421

Query: 442 SKNH-------NIGDIIKVRITDVKISTLYGELVV 469
                       IG ++ V IT     +L GE++ 
Sbjct: 422 MGPAMQAAPSRLIGQMVDVNITLAYPHSLRGEVLT 456


>gi|325201495|gb|ADY96949.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Neisseria meningitidis
           M01-240149]
 gi|325207475|gb|ADZ02927.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Neisseria meningitidis
           NZ-05/33]
          Length = 442

 Score =  465 bits (1198), Expect = e-129,   Method: Composition-based stats.
 Identities = 195/448 (43%), Positives = 280/448 (62%), Gaps = 13/448 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQ--GYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           ++ F++++GCQMN YDS +M  +   +  G E+V   D+AD+I+ NTC +REKA EKV+S
Sbjct: 2   KKVFIRTFGCQMNEYDSDKMLAVLAEEHGGIEQVTQADEADIILFNTCSVREKAQEKVFS 61

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-E 141
            LGR+R LK         L++ VAGCVA  EGE I++R+P V+VV GPQT +RLP+++ +
Sbjct: 62  DLGRVRPLKEK----NPGLIIGVAGCVASQEGENIIKRAPYVDVVFGPQTLHRLPKMIVD 117

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           +   G   VD  +   +KF+ L        R  G  AF++I EGC K+C+FCVVPYTRG 
Sbjct: 118 KETSGLSQVDISFPEIEKFDHLPPA-----RVEGGAAFVSIMEGCSKYCSFCVVPYTRGE 172

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR L+ V+ E   L   GV EI LLGQNVNA+RG+  DGE C F+ LL  + EI G+ 
Sbjct: 173 EFSRPLNDVLTEIANLAQQGVKEINLLGQNVNAYRGEMDDGEICDFATLLRIVHEIPGIE 232

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHPR+ +D +I+ + DL  L+ +LHLP+QSGSDR+L +M R +TA EY+ II +
Sbjct: 233 RMRFTTSHPREFTDSIIECYRDLPKLVSHLHLPIQSGSDRVLSAMKRGYTALEYKSIIRK 292

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R++RPD+ +SSDFIVGFPGET+ +F  T+ LV  I +  +F F YSPR GTP +N+ + 
Sbjct: 293 LRAIRPDLCLSSDFIVGFPGETEREFEQTLKLVKDIAFDLSFVFIYSPRPGTPAANLHDD 352

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVL 440
                K  RL  L + +  +    N   +G +   L+E    K+  +L  R+   + V  
Sbjct: 353 TPHEEKVRRLEALNEVIEAETARINQTMIGTVQRCLVEGISKKDPDQLQARTANNRVVNF 412

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 I  +I + IT+    +L G+ V
Sbjct: 413 TGTPDMINQMIDLEITEAYTFSLRGKTV 440


>gi|78042734|ref|YP_360230.1| (dimethylallyl)adenosine tRNA methylthiotransferase
           [Carboxydothermus hydrogenoformans Z-2901]
 gi|123576193|sp|Q3ACA4|MIAB_CARHZ RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|77994849|gb|ABB13748.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 440

 Score =  465 bits (1197), Expect = e-129,   Method: Composition-based stats.
 Identities = 176/451 (39%), Positives = 274/451 (60%), Gaps = 15/451 (3%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           +  + +++ ++GCQMNV+DS  +  +  S G+        ADLI++NTC +RE A  KV+
Sbjct: 1   MAEKSYYIITHGCQMNVHDSETIAGILESMGFVPSPEEKTADLIIINTCSVRETAENKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPEL 139
           + +G ++ LK    +E  DL++ V GC+ Q E   + +L R P ++ + G      LP++
Sbjct: 61  TKIGELKKLK----RENPDLVIGVGGCIPQQEKVAKRLLERFPHLDFIFGTHNLPELPKI 116

Query: 140 LERA-RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
           LER     +RV++   S     E + +      R+ GV A++TI  GC+ FCT+C+VPY 
Sbjct: 117 LERVFEKHERVLEVWQSEGQIVEGIPV-----KREPGVRAWVTIMYGCNNFCTYCIVPYV 171

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258
           RG E SR    ++ E R+L+  G  E+TLLGQNVN+  GK L G K  F++LL  + +I 
Sbjct: 172 RGRERSRKKEDILQEIRQLVAEGYREVTLLGQNVNS-YGKDLKG-KPMFAELLADIEKID 229

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           GL R+R+TTSHPRD++D +I+       +  +LHLPVQ+GS++ILK+M+R +T   Y  +
Sbjct: 230 GLWRVRFTTSHPRDLTDDVIEVMASSRKICEHLHLPVQAGSNKILKAMHRGYTREYYLNL 289

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           +++IR+  P ++ ++D IVGFPGET++DF  T+DLV K+ Y  AF+F Y+ R GTP + M
Sbjct: 290 VEKIRAKIPKVSFTTDIIVGFPGETEEDFEQTLDLVRKVRYDSAFTFVYNKRTGTPAAEM 349

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQS 437
            +QV E VK+ R+  L +      +  N    G I E+L+E   K ++ KL GR+   + 
Sbjct: 350 KDQVPEEVKSRRIQELIELQNGISLELNKNEEGNIHEILVEGKSKTDETKLAGRTRTNKL 409

Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           VV N     +G ++KV+IT+ K+  L G LV
Sbjct: 410 VVFNGNEDLVGKLVKVKITEGKLFHLEGVLV 440


>gi|327482390|gb|AEA85700.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Pseudomonas stutzeri DSM 4166]
          Length = 437

 Score =  465 bits (1197), Expect = e-129,   Method: Composition-based stats.
 Identities = 206/451 (45%), Positives = 288/451 (63%), Gaps = 18/451 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++ F++++GCQMN YDS RM D+    Q  E   +  +AD+I+LNTC IREKA EKV+
Sbjct: 1   MTRKLFIETHGCQMNEYDSSRMVDLLGEHQAMEITENPAEADVILLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S LGR R LK     +   L++ V GCVA  EG  I  R+P V+VV GPQT +RLPE+++
Sbjct: 61  SQLGRWRELKQ----DNPQLVIGVGGCVASQEGAAIRDRAPYVDVVFGPQTLHRLPEMID 116

Query: 142 RARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
            AR  +   VD  +   +KF+RL        R  G +A++++ EGC K+CTFCVVPYTRG
Sbjct: 117 AARTTRTPQVDISFPEIEKFDRLP-----EPRVDGPSAYVSVMEGCSKYCTFCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR L+ V+ E   L +NGV E+TLLGQNVN +R  G D     F+DLL++++ I+G+
Sbjct: 172 EEVSRPLADVLAEIVHLAENGVKEVTLLGQNVNGYRHDGHD-----FADLLHAVAAIEGI 226

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+RYTTSHP + SD +I+AH D+  L+ YLHLPVQ+GSDRIL +M R HTA EY+  I 
Sbjct: 227 GRIRYTTSHPLEFSDAIIQAHADIPQLVKYLHLPVQAGSDRILAAMKRNHTALEYKSRIR 286

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           R+++  PDI ISSDFIVGFPGETD DF  TM L++ +G+  ++SF YS R GTP +++ +
Sbjct: 287 RLKAAVPDILISSDFIVGFPGETDKDFEQTMKLIEDVGFDFSYSFVYSARPGTPAADLAD 346

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVV 439
              E VK +RL  LQ+++ +Q    +   VG    +L+  +  K+ G L GR+   + V 
Sbjct: 347 DTPEEVKKQRLAILQQRINQQGFENSRRMVGTTQRILVSDYSKKDPGMLQGRTEHNRIVN 406

Query: 440 LNSKNH-NIGDIIKVRITDVKISTLYGELVV 469
               N   IG  + V I D    +L G L+ 
Sbjct: 407 FRCDNPRLIGQFVDVHIDDALPHSLRGTLLA 437


>gi|320322684|gb|EFW78777.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Pseudomonas
           syringae pv. glycinea str. B076]
 gi|320330531|gb|EFW86510.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Pseudomonas
           syringae pv. glycinea str. race 4]
 gi|330873660|gb|EGH07809.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Pseudomonas
           syringae pv. glycinea str. race 4]
          Length = 442

 Score =  465 bits (1197), Expect = e-129,   Method: Composition-based stats.
 Identities = 199/450 (44%), Positives = 284/450 (63%), Gaps = 13/450 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++ +++++GCQMN YDS RM D+    Q  E     +DAD+I+LNTC IRE+A ++VY
Sbjct: 1   MAKKLYIETHGCQMNEYDSSRMVDLLGEHQALEVTARAEDADVILLNTCSIRERAQDRVY 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S LGR R LK +      ++++ V GCVA  EG  I  R+P V+VV GPQT +RLPE+++
Sbjct: 61  SQLGRWRELKLA----NPEMVIAVGGCVASQEGAAIRDRAPYVDVVFGPQTLHRLPEMID 116

Query: 142 RARFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
            AR  +   VD  +   +KF+ L        R  G +A++++ EGC K+CTFCVVPYTRG
Sbjct: 117 VARITRLPQVDVSFPEIEKFDHLP-----EPRVDGPSAYVSVMEGCSKYCTFCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR    V+ E   L +NGV E+TLLGQNVN +RG   DG     +DL+  ++ + G+
Sbjct: 172 EEVSRPFDDVLSEVIHLAENGVREVTLLGQNVNGYRGTTHDGRVADLADLIRVVAAVDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+RYTTSHP + SD LI+AH ++  L+ +LHLPVQSGSDRIL +M R HT  EY+  + 
Sbjct: 232 DRIRYTTSHPLEFSDSLIQAHAEVPELVKHLHLPVQSGSDRILAAMKRNHTTLEYKSRLR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R+  P I+ISSDFIVGFPGET+ DF  TM L++ +G+  +FSF YSPR GTP +++ +
Sbjct: 292 KLRAAVPGISISSDFIVGFPGETEKDFDNTMKLIEDVGFDFSFSFVYSPRPGTPAADLKD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVV 439
              E +K ERL  LQ +L +Q    +   VG I  +L+  +  K+ G+L GR+   + V 
Sbjct: 352 DTPEALKKERLAALQHRLNQQGFEISRQMVGSIQRILVTDYSKKDPGELQGRTENNRIVN 411

Query: 440 LNSKNH-NIGDIIKVRITDVKISTLYGELV 468
               N   IG    V I D +  +L G L+
Sbjct: 412 FRCNNPKLIGQFADVHIDDAQPHSLRGSLL 441


>gi|302877837|ref|YP_003846401.1| RNA modification enzyme, MiaB family [Gallionella capsiferriformans
           ES-2]
 gi|302580626|gb|ADL54637.1| RNA modification enzyme, MiaB family [Gallionella capsiferriformans
           ES-2]
          Length = 443

 Score =  465 bits (1197), Expect = e-129,   Method: Composition-based stats.
 Identities = 197/446 (44%), Positives = 288/446 (64%), Gaps = 12/446 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ ++K+YGCQMN YDS +M D+  +  G E+ + +++AD+I+ NTC IREKA EKV+S 
Sbjct: 2   KKLYIKTYGCQMNEYDSDKMADVMRACDGMEQTDKIEEADVILFNTCSIREKAEEKVFSD 61

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE-R 142
           LGR+R LK +      +L++ V GCVA  EG+ I++R+P V+VV GPQT +RLPEL++ R
Sbjct: 62  LGRVRPLKLA----NPNLVIGVGGCVASQEGDVIIKRAPYVDVVFGPQTLHRLPELIKAR 117

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
              G+  VD  +   +KF+ L             +AF++I EGC K+CTFCVVPYTRG E
Sbjct: 118 RDSGRAQVDISFPEIEKFDHLPT-----PVTTSASAFVSIMEGCSKYCTFCVVPYTRGEE 172

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR LS V+ +  +L   GV E+TL+GQNVNA+ G   D +   F+ L+ +++ +  + R
Sbjct: 173 VSRPLSDVMKDIEELTAQGVKEVTLIGQNVNAYAGLTEDDDTVDFAYLIQAIAALPEIAR 232

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +RY+TSHPRDMS  LI  +     L+ +LHLPVQSGSDR+L +M R HT  EY+ +I R+
Sbjct: 233 IRYSTSHPRDMSQRLIDVYATTPKLVSHLHLPVQSGSDRVLAAMKRGHTVLEYKSVIRRV 292

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R++RPD+ ++SDFIVGFPGET+ DF AT+ L++ IG+  +FS+ YSPR GTP + M +  
Sbjct: 293 RALRPDLCVTSDFIVGFPGETEADFEATLKLIEDIGFDNSFSYLYSPRPGTPAAEMHDDT 352

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441
              VK+ RL  LQ KL   +     A +G +  VL+E   K+   ++ GR+   + +   
Sbjct: 353 PLEVKSARLKRLQDKLSSLEDGVGQAMLGSVQRVLVEGISKKDLLEMAGRTDNNRVINFR 412

Query: 442 SKNHNIGDIIKVRITDVKISTLYGEL 467
                IG  + V++T+V   TL GEL
Sbjct: 413 GSPGMIGRFVDVKVTEVVRHTLRGEL 438


>gi|118443818|ref|YP_878177.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Clostridium
           novyi NT]
 gi|229890490|sp|A0Q0M5|MIAB_CLONN RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|118134274|gb|ABK61318.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Clostridium novyi NT]
          Length = 452

 Score =  465 bits (1197), Expect = e-129,   Method: Composition-based stats.
 Identities = 168/448 (37%), Positives = 269/448 (60%), Gaps = 15/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +RFF+ ++GCQMN  DS ++  +    GY R +  D+AD+++ NTC +RE A +KVY  L
Sbjct: 16  KRFFISTWGCQMNEEDSEKISGLLKGIGYTRTDIRDEADVVIFNTCCVRENAEQKVYGHL 75

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQA--EGEEILRRSPIVNVVVGPQTYYRLPELLER 142
           G ++ LK        +L+++V GC+ Q     E+++ + P V+++ G    Y+LPE +ER
Sbjct: 76  GELKALKRK----NPNLILIVTGCMMQQKGMPEKVMEKFPHVDIIAGTYNSYKLPEYIER 131

Query: 143 AR-FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
            +  G  +++     +   E L +     +RK  + AF+TI  GC+ FC++C+VPY RG 
Sbjct: 132 VKTEGNSIIEIWDKEKGIVEGLPV-----DRKSDIKAFVTIMYGCNNFCSYCIVPYVRGR 186

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR    ++DE + L+  G  EITLLGQNVN+  GKGL+ E   F+ LL  +++I GL 
Sbjct: 187 ERSRDPQNIIDEIKDLVSKGYKEITLLGQNVNS-YGKGLEPE-INFATLLRMVNKIDGLE 244

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+ TSHP+D+SD LIKA  + + +    H  +QSGS  IL+ MNR++T  +Y  ++ +
Sbjct: 245 RIRFMTSHPKDVSDELIKAMAECEKVCEQGHFALQSGSTEILQKMNRKYTREDYLTLVKK 304

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R   P++ IS+D I+G+PGET+ DF  T+ +V +I +  AF+F YS R GTP + + +Q
Sbjct: 305 LRKAMPNVGISTDIIIGYPGETEKDFEDTLSIVKEIEFDSAFTFIYSKREGTPAAKLEDQ 364

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVL 440
           V E+VK  R   L + + E     N    G+ +EVL+E   K +  KL+GR+   + V  
Sbjct: 365 VPEDVKHTRFNKLVEAVNEIMARKNKEFEGKTVEVLVEGPSKNDDTKLMGRTRSGKLVNF 424

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
           N     +G ++ ++IT     +L GE++
Sbjct: 425 NGCLDQVGKLVNIKITKANSFSLTGEII 452


>gi|217969294|ref|YP_002354528.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Thauera sp.
           MZ1T]
 gi|217506621|gb|ACK53632.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Thauera sp. MZ1T]
          Length = 454

 Score =  465 bits (1196), Expect = e-129,   Method: Composition-based stats.
 Identities = 195/459 (42%), Positives = 294/459 (64%), Gaps = 23/459 (5%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ +++++GCQMN YDS +M D+  + +   + ++ ++AD+I+ NTC +REKA E+V+  
Sbjct: 2   KKLYIRTFGCQMNEYDSDKMADVLGAHEELVKTDNPEEADVILFNTCSVREKAQERVFHD 61

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE-R 142
           LGR+R LK         L++ V GCVA  EGE I++R+P V+VV GPQT +RLP L+  R
Sbjct: 62  LGRVRLLKQK----KPGLIIGVGGCVASQEGEAIVKRAPYVDVVFGPQTLHRLPSLIAAR 117

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            + G+  VD  +   +KF+ +        R  G +AF++I EGC K+CTFCVVPYTRG E
Sbjct: 118 KQSGRSQVDISFPEIEKFDAMPPA-----RVEGASAFVSIMEGCSKYCTFCVVPYTRGDE 172

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG--KGLDGEKC----TFSDLLYSLSE 256
           +SR L  V+ E   L   GV E+TLLGQNVNAWRG     DGE+      F+ LL  ++E
Sbjct: 173 VSRPLEDVLAEIAGLAAQGVKEVTLLGQNVNAWRGVLSREDGEQGADVGDFAFLLECVAE 232

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           I G+ R+RYTTSHPR+M+  LI  +  L  L+  LHLPVQSGSDR+L +M R ++  E++
Sbjct: 233 IPGIERIRYTTSHPREMTQRLIDCYAKLPKLVSQLHLPVQSGSDRVLAAMKRGYSVLEFK 292

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
            ++ ++R+ RPD++++SDFIVGFPGET++DF  TM L+D +G+  +FSF YS R GTP +
Sbjct: 293 SVVRKLRAARPDLSLTSDFIVGFPGETEEDFEKTMKLIDDVGFDGSFSFVYSSRPGTPAA 352

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPW 434
           ++ + V +  K   L  LQK++ EQ  + ++A VG +  +L+E   K+    +++GRS  
Sbjct: 353 DLEDPVAQETKLAWLARLQKRIDEQYQANSEAMVGTVQRILVEGAAKKNAEAEMMGRSDN 412

Query: 435 LQSVVLNSK----NHNIGDIIKVRITDVKISTLYGELVV 469
            + V   S     +  +G  ++VRIT     +L GE++ 
Sbjct: 413 NRVVNFPSDSPVRDRLVGQFVEVRITAALPHSLRGEILT 451


>gi|307822344|ref|ZP_07652576.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Methylobacter
           tundripaludum SV96]
 gi|307736910|gb|EFO07755.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Methylobacter
           tundripaludum SV96]
          Length = 438

 Score =  465 bits (1196), Expect = e-129,   Method: Composition-based stats.
 Identities = 190/436 (43%), Positives = 281/436 (64%), Gaps = 12/436 (2%)

Query: 36  MNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSR 94
           MN YDS +M D+   S G+E ++    AD+++LNTC IREKA EKV+S LG+ R +K+ R
Sbjct: 1   MNEYDSDKMRDVLNASHGFELIDDPKQADVLLLNTCSIREKAQEKVFSALGKWRKIKDKR 60

Query: 95  IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR-VVDTD 153
                D+++ V GCVA  EG  I +R+P V++V GPQT +RLP+LL++AR  ++ VVD  
Sbjct: 61  ----PDVIIGVGGCVASQEGAAIQKRAPFVDIVFGPQTLHRLPQLLDQARSQQKPVVDVS 116

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           +   +KF+ L        R  G  AF+++ EGC K+CTFCVVPYTRG EISR L  V+ E
Sbjct: 117 FPEIEKFDALP-----EPRAEGPKAFVSVMEGCSKYCTFCVVPYTRGEEISRPLDDVIAE 171

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
              L   GV EI LLGQNVNA+RG+  DG+   F+ LL+ ++ ++G+ R+R+TTSHP + 
Sbjct: 172 ITSLAKQGVREINLLGQNVNAYRGEMDDGDIADFALLLHYVAAVEGIDRIRFTTSHPMEF 231

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
           +D LI+A  ++  L+ +LHLPVQSGSD ILK M R H   +Y +II ++R+VRP+I +SS
Sbjct: 232 TDELIEAFAEIPQLVDHLHLPVQSGSDHILKMMKRGHARADYIEIIRKLRAVRPNIYLSS 291

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLC 393
           DFI+GFPGETD +F  TM  +++IG+  +FSF YS R GTP +++ + V  +VK +RL  
Sbjct: 292 DFIIGFPGETDAEFEETMSFIEEIGFDLSFSFVYSQRPGTPAADLPDDVPADVKKQRLER 351

Query: 394 LQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLVGRSPWLQSVVLNSKNHNIGDIIK 452
            Q ++ E   + +++ +G +  VL+E   K+   ++ GR+   + V         G  + 
Sbjct: 352 FQNRINEMTAAISESMIGTVQTVLVEGQSKKNPLQMQGRTENNRVVNFIGHPRLAGQFVD 411

Query: 453 VRITDVKISTLYGELV 468
           V I +   ++L G +V
Sbjct: 412 VLIAEALPNSLRGRMV 427


>gi|312963219|ref|ZP_07777703.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Pseudomonas fluorescens
           WH6]
 gi|311282485|gb|EFQ61082.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Pseudomonas fluorescens
           WH6]
          Length = 442

 Score =  465 bits (1196), Expect = e-129,   Method: Composition-based stats.
 Identities = 198/450 (44%), Positives = 286/450 (63%), Gaps = 13/450 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++ +++++GCQMN YDS RM D+    Q  E     +DAD+I+LNTC IRE+A ++VY
Sbjct: 1   MAKKLYIETHGCQMNEYDSSRMVDLLGEHQALEVTARAEDADVILLNTCSIRERAQDRVY 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S LGR R LK +      D+++ V GCVA  EG  I  R+P V+VV GPQT +RLPE+++
Sbjct: 61  SQLGRWRELKLA----NPDMVIAVGGCVASQEGAAIRDRAPYVDVVFGPQTLHRLPEMID 116

Query: 142 RARFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
            AR  K   VD  +   +KF+ L        R  G +A++++ EGC K+CTFCVVPYTRG
Sbjct: 117 AARATKLPQVDVSFPEIEKFDHLP-----EPRIDGPSAYVSVMEGCSKYCTFCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR    V+ E   L +NGV E+TLLGQNVN +RG+  DG     ++L+  ++ + G+
Sbjct: 172 EEVSRPFDDVLSEIIHLAENGVREVTLLGQNVNGYRGQTHDGRLADLAELIRVVAAVDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+RYTTSHP + SD LI+AH ++  L+ +LHLPVQSGSDRIL +M R HTA EY+  + 
Sbjct: 232 ERIRYTTSHPLEFSDSLIQAHAEVPELVKHLHLPVQSGSDRILSAMKRNHTALEYKSKLR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R+  P I ISSDFIVGFPGET+ DF+ TM L++ +G+  ++SF YS R GTP +++L+
Sbjct: 292 KLRAAVPGICISSDFIVGFPGETEKDFQQTMKLIEDVGFDFSYSFVYSQRPGTPAADLLD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVV 439
           +  E +K ERL  LQ +L +Q    +   VG +  +L+  +  K+ G+L GR+   + V 
Sbjct: 352 ETPEALKKERLNALQHRLNQQGFEISRQMVGSVQRILVTDYSKKDPGELQGRTENNRIVN 411

Query: 440 LNSKNH-NIGDIIKVRITDVKISTLYGELV 468
               N   IG    V I   +  +L G L+
Sbjct: 412 FRCDNPTLIGQFADVHIDAAQPHSLRGSLI 441


>gi|321315467|ref|YP_004207754.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
           subtilis BSn5]
 gi|320021741|gb|ADV96727.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
           subtilis BSn5]
          Length = 509

 Score =  465 bits (1196), Expect = e-129,   Method: Composition-based stats.
 Identities = 178/448 (39%), Positives = 259/448 (57%), Gaps = 15/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++F++++YGCQMN +D+  M  +F + GYE  NS+DDA++I+LNTC IRE A  KV+  L
Sbjct: 66  RKFYIRTYGCQMNEHDTEVMAGIFMALGYEATNSVDDANVILLNTCAIRENAENKVFGEL 125

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G ++ LK    K   DL++ V GC++Q E     IL++ P V+++ G    +RLPELL  
Sbjct: 126 GHLKALK----KNNPDLILGVCGCMSQEESVVNRILKKHPFVDMIFGTHNIHRLPELLSE 181

Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           A   K +V   +S E D  E L  V  G      +  ++ I  GCDKFCT+C+VPYTRG 
Sbjct: 182 AYLSKEMVVEVWSKEGDVIENLPKVRNGK-----IKGWVNIMYGCDKFCTYCIVPYTRGK 236

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR    ++ E R+L   G  EITLLGQNVNA  GK  +       DL+  L +I  + 
Sbjct: 237 ERSRRPEDIIQEVRRLASEGYKEITLLGQNVNA-YGKDFEDMTYGLGDLMDELRKID-IP 294

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHPRD  D LI+       L+ ++HLPVQSGS  +LK M R++    Y +++ +
Sbjct: 295 RIRFTTSHPRDFDDRLIEVLAKGGNLLDHIHLPVQSGSSEVLKLMARKYDRERYMELVRK 354

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I+   P+ ++++D IVGFP ETD+ F  T+ L  ++ +  A++F YSPR GTP + M + 
Sbjct: 355 IKEAMPNASLTTDIIVGFPNETDEQFEETLSLYREVEFDSAYTFIYSPREGTPAAKMKDN 414

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVL 440
           V   VK ERL  L   + E          G+++EVL+E   K     L G +   + V  
Sbjct: 415 VPMRVKKERLQRLNALVNEISAKKMKEYEGKVVEVLVEGESKNNPDILAGYTEKSKLVNF 474

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 IG I++V+I   K  +L GE+V
Sbjct: 475 KGPKEAIGKIVRVKIQQAKTWSLDGEMV 502


>gi|56550973|ref|YP_161812.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Zymomonas
           mobilis subsp. mobilis ZM4]
 gi|260753353|ref|YP_003226246.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Zymomonas
           mobilis subsp. mobilis NCIMB 11163]
 gi|81355650|sp|Q5NRF3|MIAB_ZYMMO RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|56542547|gb|AAV88701.1| RNA modification enzyme, MiaB family [Zymomonas mobilis subsp.
           mobilis ZM4]
 gi|258552716|gb|ACV75662.1| RNA modification enzyme, MiaB family [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
          Length = 445

 Score =  465 bits (1196), Expect = e-129,   Method: Composition-based stats.
 Identities = 236/444 (53%), Positives = 322/444 (72%), Gaps = 13/444 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + F++KS+GCQMN YD  RM ++  SQG +       ADL+VLNTCHIREKAAEKVYS +
Sbjct: 7   KHFYIKSFGCQMNSYDGERMSELLESQGMKAAEEAATADLVVLNTCHIREKAAEKVYSEI 66

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR+R        +G   ++ +AGCVAQAEG E+L R+ +V++VVGPQ Y+ LPEL+E+A 
Sbjct: 67  GRLRR------PDGSSPMIALAGCVAQAEGAEVLARTKMVDIVVGPQAYHHLPELIEKAA 120

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            GK VVD D  +E KF+ L        R+ G +AFLT+QEGCDKFCT+CVVPYTRG E+S
Sbjct: 121 SGK-VVDIDMPLESKFDALP-----ERRQVGASAFLTVQEGCDKFCTYCVVPYTRGAEVS 174

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R  S++V EA  L+D G  EITLLGQNVNAW G+   G       L+ +L++I GL R+R
Sbjct: 175 RPWSRIVKEAHALVDKGAREITLLGQNVNAWTGEDEAGRSQGLDGLIRALAKIDGLERIR 234

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           YTTSHP DM++ LI+AHG++D LMP+LHLPVQSGS+RILK+MNR HTA  Y  +++R++ 
Sbjct: 235 YTTSHPNDMTEGLIEAHGEIDKLMPFLHLPVQSGSNRILKAMNRAHTAESYLTLMNRLKE 294

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           VRPDIA+S DFIVGFPGE+++DF+AT+DL+ ++GY+ AFSF YSPR GTP ++M  Q+D 
Sbjct: 295 VRPDIALSGDFIVGFPGESEEDFQATLDLISEVGYSLAFSFAYSPRPGTPAADMDNQIDP 354

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
            +  ERL  LQ  L +QQ  FN   +G+   VLIE+ GK+  +++G+SPWLQSV++ +  
Sbjct: 355 EISRERLQRLQALLNQQQFDFNQQTIGRKATVLIERKGKKADQMIGKSPWLQSVIIEAP- 413

Query: 445 HNIGDIIKVRITDVKISTLYGELV 468
             IGD+++V +TD   +++ G+ +
Sbjct: 414 VAIGDLVEVTLTDAGPNSVKGQFL 437


>gi|319649479|ref|ZP_08003635.1| YmcB protein [Bacillus sp. 2_A_57_CT2]
 gi|317398641|gb|EFV79323.1| YmcB protein [Bacillus sp. 2_A_57_CT2]
          Length = 515

 Score =  465 bits (1196), Expect = e-129,   Method: Composition-based stats.
 Identities = 177/448 (39%), Positives = 264/448 (58%), Gaps = 15/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++F++++YGCQMN +D+  M  +F   GYE   S++DA++I+LNTC IRE A  KV+  L
Sbjct: 69  RKFYIRTYGCQMNEHDTEVMAGIFLGLGYEHTESVEDANVILLNTCAIRENAENKVFGEL 128

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G +++LK    KE  DLL+ V GC++Q E    +IL+    V+++ G    +RLP +L+ 
Sbjct: 129 GHLKHLK----KENPDLLIGVCGCMSQEESVVNKILKTYNQVDMIFGTHNIHRLPNILQE 184

Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           A   K +V   +S E D  E L  V     R+  + A++ I  GCDKFCT+C+VPYTRG 
Sbjct: 185 AYMSKEMVIEVWSKEGDVIENLPKV-----RRGNIKAWVNIMYGCDKFCTYCIVPYTRGK 239

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR    ++ E R+L   G  EITLLGQNVNA  GK  +       DL+  + +I  + 
Sbjct: 240 ERSRRPEDIIQEVRQLAAQGYQEITLLGQNVNA-YGKDFEDMNYGLGDLMDEMRKID-IP 297

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHPRD  D LI+       L+ ++HLPVQSGS  +LK M R++T  +Y +++ +
Sbjct: 298 RVRFTTSHPRDFDDHLIEVLAKGGNLVEHIHLPVQSGSTDVLKIMARKYTREQYLELVRK 357

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I++  P+   ++D IVG+P ET++ F  T+ L  ++G+  A++F YSPR GTP + M++ 
Sbjct: 358 IKAAIPEATFTTDIIVGYPNETEEQFEETISLYREVGFEAAYTFIYSPREGTPAAKMVDN 417

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440
           V   VK ERL  L   + E          GQ +EVL+E   K   + L G +   + V  
Sbjct: 418 VPMEVKKERLQRLNAVVNELSAEAMKKYKGQTVEVLVEGESKNNPEILAGYTRKNKLVNF 477

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 IG I+ V++TD K  +L GE+V
Sbjct: 478 KGPKTAIGKIVNVKVTDAKTWSLNGEMV 505


>gi|229890671|sp|A4VQY3|MIAB_PSEU5 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
          Length = 437

 Score =  464 bits (1195), Expect = e-128,   Method: Composition-based stats.
 Identities = 206/450 (45%), Positives = 287/450 (63%), Gaps = 18/450 (4%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++ F++++GCQMN YDS RM D+    Q  E   +  +AD+I+LNTC IREKA EKV+
Sbjct: 1   MTRKLFIETHGCQMNEYDSSRMVDLLGEHQAMEITENPAEADVILLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S LGR R LK     +   L++ V GCVA  EG  I  R+P V+VV GPQT +RLPE+++
Sbjct: 61  SQLGRWRELKQ----DNPQLVIGVGGCVASQEGAAIRDRAPYVDVVFGPQTLHRLPEMID 116

Query: 142 RARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
            AR  +   VD  +   +KF+RL        R  G +A++++ EGC K+CTFCVVPYTRG
Sbjct: 117 AARTTRTPQVDISFPEIEKFDRLP-----EPRVDGPSAYVSVMEGCSKYCTFCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR L+ V+ E   L +NGV E+TLLGQNVN +R  G D     F+DLL++++ I G+
Sbjct: 172 EEVSRPLADVLAEIVHLAENGVKEVTLLGQNVNGYRHDGHD-----FADLLHAVAAIDGI 226

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+RYTTSHP + SD +I+AH D+  L+ YLHLPVQ+GSDRIL +M R HTA EY+  I 
Sbjct: 227 GRIRYTTSHPLEFSDAIIQAHADIPQLVKYLHLPVQAGSDRILAAMKRNHTALEYKSRIR 286

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           R+++  PDI ISSDFIVGFPGETD DF  TM L++ +G+  ++SF YS R GTP +++ +
Sbjct: 287 RLKAAVPDILISSDFIVGFPGETDKDFEQTMKLIEDVGFDFSYSFVYSARPGTPAADLAD 346

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVV 439
              E VK +RL  LQ+++ +Q    +   VG    +L+  +  K+ G L GR+   + V 
Sbjct: 347 DTPEEVKKQRLAILQQRINQQGFENSRRMVGTTQRILVSDYSKKDPGMLQGRTEHNRIVN 406

Query: 440 LNSKNH-NIGDIIKVRITDVKISTLYGELV 468
               N   IG  + V I D    +L G L+
Sbjct: 407 FRCDNPRLIGQFVDVHIDDALPHSLRGSLL 436


>gi|83589960|ref|YP_429969.1| tRNA-i(6)A37 modification enzyme MiaB [Moorella thermoacetica ATCC
           39073]
 gi|123725725|sp|Q2RJG3|MIAB_MOOTA RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|83572874|gb|ABC19426.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Moorella thermoacetica
           ATCC 39073]
          Length = 444

 Score =  464 bits (1195), Expect = e-128,   Method: Composition-based stats.
 Identities = 175/447 (39%), Positives = 266/447 (59%), Gaps = 13/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + F + +YGCQMN  DS  M D+    GYE V   ++A +I+L+TC +REKA  KVY  L
Sbjct: 6   KTFKIITYGCQMNQRDSEMMADLLQDAGYEPVAREEEAGVIILDTCCVREKAENKVYGKL 65

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G+I  LK++      DL++ VAGC+ Q  G  E+I +++P V++++G      LP+L+E 
Sbjct: 66  GQIEKLKSA----NPDLVIAVAGCMVQQPGVAEKIRQQAPYVDLLLGTGNLQELPQLIEE 121

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            +   R        E       + D    R RG  AF+TI  GC+ FCT+C+VPY RG E
Sbjct: 122 IKAMHRPRIVVGEQEGPV----VEDLPRRRARGAQAFVTITYGCNNFCTYCIVPYVRGRE 177

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR    ++ E ++L+D GV E+TLLGQNVN++     DG    F+ LL  ++ ++GL R
Sbjct: 178 RSRRPENIIKEVKELVDQGVIEVTLLGQNVNSYGRDLRDG--INFAGLLERVNAVEGLKR 235

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +RY TSHPRD +  L+     LD +  ++HLPVQ+GS+RIL+ M+R +T   Y +++  +
Sbjct: 236 IRYVTSHPRDFTPELVTTISRLDKVCEHVHLPVQAGSNRILELMHRGYTREHYLELVADL 295

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R   P I++++D IVGFPGET+ DF  T+DLV ++ +  AF+F YSPR GT  + M  Q+
Sbjct: 296 RRHIPGISLTTDLIVGFPGETEADFEDTLDLVARVQFDNAFTFMYSPRRGTEAATMPGQL 355

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVLN 441
              +K ERL  L +      ++ N+A VGQ +EVL+E   K +  +L GR+   + ++  
Sbjct: 356 PTAIKKERLKRLMELQNSISLAKNEALVGQEVEVLVEGPSKTDPDQLSGRTRTNKLIIFP 415

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                 G +++VR+T  +   L GE+V
Sbjct: 416 GDQSLTGRLVRVRLTRAQTWLLKGEMV 442


>gi|121997684|ref|YP_001002471.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Halorhodospira halophila
           SL1]
 gi|229890553|sp|A1WVF7|MIAB_HALHL RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|121589089|gb|ABM61669.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Halorhodospira halophila
           SL1]
          Length = 474

 Score =  464 bits (1195), Expect = e-128,   Method: Composition-based stats.
 Identities = 201/450 (44%), Positives = 280/450 (62%), Gaps = 13/450 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           V +R +V++ GCQMN YD+ R+ D+     G  RV+  ++ADL++LNTC +REKA EKV+
Sbjct: 19  VSERVYVETQGCQMNDYDAERLVDVLVSQAGARRVDRPEEADLLLLNTCSVREKAQEKVF 78

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S LGR R  K     +   +L+ V GCVA  EG EILRR+P V++V GPQT +RLP++L 
Sbjct: 79  SQLGRWRRYKQ----DNPTVLIGVGGCVASQEGAEILRRAPFVDLVFGPQTLHRLPQMLA 134

Query: 142 RARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           R R G    VD D+   +KF+ L        R  G TA++++ EGC K+C+FCVVPYTRG
Sbjct: 135 RRRSGASAQVDVDFPEIEKFDHLP-----QPRAEGPTAYVSVMEGCSKYCSFCVVPYTRG 189

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            EISR ++ V+ E R L + GV E+ LLGQNVNA+ G   DGE+     L+ +++ I G+
Sbjct: 190 DEISRPVADVLAEVRSLAEQGVREVNLLGQNVNAYAGALDDGERADLGLLIEAVARIPGI 249

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+TTSHP +    LI A+ D+  L  +LHLPVQSGSD ILK M R H    Y  +ID
Sbjct: 250 DRIRFTTSHPAEFHSGLIDAYRDVPELADFLHLPVQSGSDLILKLMKRGHDIAAYEALID 309

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA-QAFSFKYSPRLGTPGSNML 379
           +IR+VRP + +++D IVGFPGET+ +F  T+ +VD++G+   AFSF YSPR GTP + + 
Sbjct: 310 QIRAVRPGLVLATDLIVGFPGETEAEFEETLAMVDRVGFDGGAFSFVYSPRPGTPAAELH 369

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSV 438
           + V E  K   L  LQ +L EQQ +   A +G    VLI+   +   + L GR+   + V
Sbjct: 370 DGVPEADKRAWLQRLQARLHEQQSAAARALLGTRQSVLIDGPSRRDPRELSGRTSGNRVV 429

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468
                   IG   +V ITD +  +L G +V
Sbjct: 430 NFPGDPSWIGRFAEVEITDARTHSLRGRVV 459


>gi|197106915|ref|YP_002132292.1| 2-methylthioadenine synthetase [Phenylobacterium zucineum HLK1]
 gi|229890591|sp|B4RC70|MIAB_PHEZH RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|196480335|gb|ACG79863.1| 2-methylthioadenine synthetase [Phenylobacterium zucineum HLK1]
          Length = 450

 Score =  464 bits (1195), Expect = e-128,   Method: Composition-based stats.
 Identities = 243/451 (53%), Positives = 317/451 (70%), Gaps = 7/451 (1%)

Query: 18  VDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA 77
           + +    +R ++K+YGCQMNVYDS RM D+    GY   +    ADL+VLNTCHIREKA 
Sbjct: 1   MSEPAPAKRLYIKTYGCQMNVYDSERMADVLAPLGYGVTDDPAAADLVVLNTCHIREKAT 60

Query: 78  EKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLP 137
           EKVYS LG+I+ LK +R  EG  + + VAGCVAQAEGEEI+RR P V++VVGPQ Y++LP
Sbjct: 61  EKVYSELGQIKRLKEARRAEGQGMTIAVAGCVAQAEGEEIMRRQPAVDLVVGPQAYHQLP 120

Query: 138 ELLERARFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
           EL+ RA   +   +  D++ ++KF+ L+       R  GVTAFLT+QEGCDKFCTFCVVP
Sbjct: 121 ELIARAHRARGERLAADFAPDEKFDALAT----ERRPTGVTAFLTVQEGCDKFCTFCVVP 176

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256
           YTRG E SR    +  EAR L   GV E+TLLGQNVNA+   G +G+    + L+  L++
Sbjct: 177 YTRGGEWSRPAEAIEAEARALAAKGVREVTLLGQNVNAY--DGANGQGAGLAGLVRRLAK 234

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           I GL R+RYTTSHPRDM D LI AH ++  LMPYLHLPVQ+GSDRIL++MNR HTA  Y 
Sbjct: 235 IPGLDRIRYTTSHPRDMDDDLIAAHAEVPELMPYLHLPVQAGSDRILRAMNRAHTAESYL 294

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
           ++I+++R  RPDIAIS DFIVGFPGE + DF AT+ LV ++GYA  FSFKYS R GTP +
Sbjct: 295 RVIEKVRVARPDIAISGDFIVGFPGEREADFEATLQLVREVGYASCFSFKYSRRPGTPAA 354

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQ 436
            +  QV E VK ERL  LQ  L +QQ++FN A  G+++ VL EK G+  G+L+GRSP+LQ
Sbjct: 355 ALPGQVAEEVKEERLQRLQALLEQQQLAFNAAQAGRVLPVLFEKTGRHPGQLIGRSPYLQ 414

Query: 437 SVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
           +V  ++ +  IG I+ V++     ++L G L
Sbjct: 415 AVHAHAPDRLIGQIVPVKVESGGRNSLAGVL 445


>gi|16078764|ref|NP_389583.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
           subtilis subsp. subtilis str. 168]
 gi|221309576|ref|ZP_03591423.1| hypothetical protein Bsubs1_09356 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221313900|ref|ZP_03595705.1| hypothetical protein BsubsN3_09287 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221318823|ref|ZP_03600117.1| hypothetical protein BsubsJ_09216 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221323095|ref|ZP_03604389.1| hypothetical protein BsubsS_09327 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|6226482|sp|O31778|MIAB_BACSU RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|2634073|emb|CAB13574.1| putative conserved AdoMet radical enzyme for tRNA modification
           [Bacillus subtilis subsp. subtilis str. 168]
          Length = 509

 Score =  464 bits (1195), Expect = e-128,   Method: Composition-based stats.
 Identities = 178/448 (39%), Positives = 259/448 (57%), Gaps = 15/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++F++++YGCQMN +D+  M  +F + GYE  NS+DDA++I+LNTC IRE A  KV+  L
Sbjct: 66  RKFYIRTYGCQMNEHDTEVMAGIFMALGYEATNSVDDANVILLNTCAIRENAENKVFGEL 125

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G ++ LK    K   DL++ V GC++Q E     IL++ P V+++ G    +RLPELL  
Sbjct: 126 GHLKALK----KNNPDLILGVCGCMSQEESVVNRILKKHPFVDMIFGTHNIHRLPELLSE 181

Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           A   K +V   +S E D  E L  V  G      +  ++ I  GCDKFCT+C+VPYTRG 
Sbjct: 182 AYLSKEMVVEVWSKEGDVIENLPKVRNGK-----IKGWVNIMYGCDKFCTYCIVPYTRGK 236

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR    ++ E R+L   G  EITLLGQNVNA  GK  +       DL+  L +I  + 
Sbjct: 237 ERSRRPEDIIQEVRRLASEGYKEITLLGQNVNA-YGKDFEDMTYGLGDLMDELRKID-IP 294

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHPRD  D LI+       L+ ++HLPVQSGS  +LK M R++    Y +++ +
Sbjct: 295 RIRFTTSHPRDFDDRLIEVLAKGGNLLDHIHLPVQSGSSEVLKLMARKYDRERYMELVRK 354

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I+   P+ ++++D IVGFP ETD+ F  T+ L  ++ +  A++F YSPR GTP + M + 
Sbjct: 355 IKEAMPNASLTTDIIVGFPNETDEQFEETLSLYREVEFDSAYTFIYSPREGTPAAKMKDN 414

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVL 440
           V   VK ERL  L   + E          G+++EVL+E   K     L G +   + V  
Sbjct: 415 VPMRVKKERLQRLNALVNEISAKKMKEYEGKVVEVLVEGESKNNPDILAGYTEKSKLVNF 474

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 IG I++V+I   K  +L GE+V
Sbjct: 475 KGPKEAIGKIVRVKIQQAKTWSLDGEMV 502


>gi|119944308|ref|YP_941988.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Psychromonas ingrahamii
           37]
 gi|229890620|sp|A1SSC4|MIAB_PSYIN RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|119862912|gb|ABM02389.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Psychromonas ingrahamii
           37]
          Length = 473

 Score =  464 bits (1195), Expect = e-128,   Method: Composition-based stats.
 Identities = 194/449 (43%), Positives = 283/449 (63%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           +  +  VK++GCQMN YDS +M D+  S  GY  V   +DAD+++LNTC IREKA EKV+
Sbjct: 1   MSMKLHVKTWGCQMNEYDSSKMADLLNSTNGYISVEHAEDADVVLLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR + LK        +L++ V GCVA  EG+ I  R+P V++V GPQT +RLPE+++
Sbjct: 61  HQLGRWKKLK----VNKPNLVIGVGGCVASQEGKAIRSRAPFVDIVFGPQTLHRLPEMIK 116

Query: 142 RARFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
             +  K  VVD  +   +KF+ L        +  G TAF++I EGC K+C+FCVVPYTRG
Sbjct: 117 EVQENKGTVVDVSFPEIEKFDSLP-----EPKADGATAFVSIMEGCSKYCSFCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR L  V+ E  +L + GV E+TLLGQNVN++ G   DG+ C+F++LL  ++ I G+
Sbjct: 172 EEVSRPLDDVLLEVAQLAEQGVREVTLLGQNVNSYLGATYDGDTCSFAELLRFVASIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            RLRY TS+P D SD +I  + D   L+ +LHLPVQ+GSDRIL +M R HT  +Y+  I 
Sbjct: 232 DRLRYVTSNPIDFSDEIIAVYEDTPELVNFLHLPVQAGSDRILAAMKRGHTVAQYKDQIA 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           R+  VRP++ +SSDFI+GFP ETD DF  TMDL+  I +  ++SF YS R GTP ++M +
Sbjct: 292 RLLQVRPELTVSSDFIIGFPNETDHDFEQTMDLIKYINFDTSYSFIYSQRPGTPAADMPD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439
            V    K +RL  LQ ++++Q        VG +  +L+E   ++   +L GR+   + V 
Sbjct: 352 DVTLETKKQRLAILQDRIQQQSQGIGRKMVGSVQRILVEGPSRKNIMELCGRTENNRIVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
               + +IG  + V IT+V  +++ G+ +
Sbjct: 412 FEGDHRSIGGFVDVEITEVHTNSIRGKFI 440


>gi|330887928|gb|EGH20589.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Pseudomonas
           syringae pv. mori str. 301020]
          Length = 442

 Score =  464 bits (1195), Expect = e-128,   Method: Composition-based stats.
 Identities = 198/450 (44%), Positives = 283/450 (62%), Gaps = 13/450 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++ +++++GCQMN YDS RM D+    Q  E     +DAD+I+LNTC IRE+A ++VY
Sbjct: 1   MAKKLYIETHGCQMNEYDSSRMVDLLGEHQALEVTARAEDADVILLNTCSIRERAQDRVY 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S LGR R LK +      ++++ V GCVA  EG  I  R+P V+VV GPQT +RLPE+++
Sbjct: 61  SQLGRWRELKLA----NPEMVIAVGGCVASQEGAAIRDRAPYVDVVFGPQTLHRLPEMID 116

Query: 142 RARFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
            AR  +   VD  +   +KF+ L        R  G +A++++ EGC K+CTFCVVPYTRG
Sbjct: 117 AARITRLPQVDVSFPEIEKFDHLP-----EPRVDGPSAYVSVMEGCSKYCTFCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR    V+ E   L +NGV E+TLLGQNVN +RG   DG     +DL+  ++ + G+
Sbjct: 172 EEVSRPFDDVLSEVIHLAENGVREVTLLGQNVNGYRGTTHDGRVADLADLIRVVAAVDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+RYTTS P + SD LI+AH ++  L+ +LHLPVQSGSDRIL +M R HT  EY+  + 
Sbjct: 232 DRIRYTTSPPLEFSDSLIQAHAEVPELVKHLHLPVQSGSDRILAAMKRNHTTLEYKSRLR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R+  P I+ISSDFIVGFPGET+ DF  TM L++ +G+  +FSF YSPR GTP +++ +
Sbjct: 292 KLRAAVPGISISSDFIVGFPGETEKDFDNTMKLIEDVGFDFSFSFVYSPRPGTPAADLKD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVV 439
              E +K ERL  LQ +L +Q    +   VG I  +L+  +  K+ G+L GR+   + V 
Sbjct: 352 DTPEALKKERLAALQHRLNQQGFEISRQMVGSIQRILVTDYSKKDPGELQGRTENNRIVN 411

Query: 440 LNSKNH-NIGDIIKVRITDVKISTLYGELV 468
               N   IG    V I D +  +L G L+
Sbjct: 412 FRCNNPKLIGQFADVHIDDAQPHSLRGSLL 441


>gi|309389296|gb|ADO77176.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Halanaerobium praevalens
           DSM 2228]
          Length = 443

 Score =  464 bits (1194), Expect = e-128,   Method: Composition-based stats.
 Identities = 169/447 (37%), Positives = 267/447 (59%), Gaps = 14/447 (3%)

Query: 26  RFF-VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +F+ + +YGCQMN +DS R+  M    GY+  +  ++AD+I+LNTC IRE A  KV+  L
Sbjct: 5   KFYNIITYGCQMNKHDSERLAGMLEEMGYQPTDKYENADIILLNTCIIRENAELKVFGKL 64

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G ++  K    +E  DL++ + GC+ Q +   +E+ ++   V+++ G    + LP+L+ +
Sbjct: 65  GELKRYK----RENPDLIIGIGGCMMQQDEPVDEVYKKYRHVDLIFGTHNIHHLPDLINK 120

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
               +  V   +  E+      I D    RK   +A+++I +GCD FCT+C+VPY RG E
Sbjct: 121 IEKTRDRVVEVWDEEEGL----IPDLPSQRKSEHSAWISIIQGCDNFCTYCIVPYVRGRE 176

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR L+ +V EA KL  +GV EITLLGQNVN+  G  L+ ++ TF  LL  L++++ L R
Sbjct: 177 RSRPLTSIVKEAEKLAADGVKEITLLGQNVNS-YGNDLE-KETTFPKLLAELNKVQKLKR 234

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+ TSHPRD SD L++   +LD +  ++HLP+QSGS+++LK MNR +T   Y + +++I
Sbjct: 235 IRFMTSHPRDFSDELLEKIAELDKVANHIHLPIQSGSNKVLKQMNRGYTREYYIERVEKI 294

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R   P  ++S+DFIVGFPGET+ DF  T++LV ++ +  A++F YSPR GTP ++  +Q+
Sbjct: 295 RKEMPHASVSTDFIVGFPGETEADFEQTINLVKELNFDMAYTFIYSPRSGTPAASRKDQI 354

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVLN 441
           DE VK +RL  L     +     N   +G   EVL+        K   GR+   +     
Sbjct: 355 DEEVKKKRLKTLMDLQNKISYDKNQKLIGSTQEVLVTGASDSNPKVYEGRTSTNKICFFE 414

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
            +   IG+++ V+I   K  TL G ++
Sbjct: 415 KREELIGELVNVKIEAAKSWTLDGTII 441


>gi|218131688|ref|ZP_03460492.1| hypothetical protein BACEGG_03309 [Bacteroides eggerthii DSM 20697]
 gi|217985991|gb|EEC52330.1| hypothetical protein BACEGG_03309 [Bacteroides eggerthii DSM 20697]
          Length = 456

 Score =  464 bits (1194), Expect = e-128,   Method: Composition-based stats.
 Identities = 166/446 (37%), Positives = 261/446 (58%), Gaps = 10/446 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F+++YGCQMNV DS  +  +    GY   +++++AD + +NTC IR+ A +K+ + L
Sbjct: 19  KKLFIETYGCQMNVADSEVIASVMQMAGYSVADTLEEADAVFMNTCSIRDNAEQKILNRL 78

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
               +LK    K+  +L+V V GC+A+   ++++     V++VVGP  Y  LP+L+    
Sbjct: 79  EFFHSLK----KKKKNLIVGVLGCMAERVKDDLITNH-HVDLVVGPDAYLTLPDLIAAVE 133

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G++ ++ + S  + +  +       N   G   F++I  GC+ FCT+C+VPYTRG E S
Sbjct: 134 AGEKAINVELSTTETYRDVIPSRICGNHISG---FVSIMRGCNNFCTYCIVPYTRGRERS 190

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R +  +++E   L+  G  E+TLLGQNVN++R +  DGE  TF  LL  ++     VR+R
Sbjct: 191 RDVESILNEVSDLVAKGYKEVTLLGQNVNSYRFEKADGEVITFPMLLRIVAGAAPGVRIR 250

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +TTSHP+DMSD  ++   ++  +  ++HLPVQSGS RILK MNR++T   Y + +D IR 
Sbjct: 251 FTTSHPKDMSDETLQVIAEVPNVCKHIHLPVQSGSSRILKLMNRKYTREWYLERVDAIRR 310

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN-MLEQVD 383
           + PD  +S+D   GF  ET++D + ++ L+++ GY  AF FKYS R GT  S  + + V 
Sbjct: 311 IVPDCGLSTDIFSGFHSETEEDHQLSLSLMEECGYDAAFMFKYSERPGTYASKHLPDDVP 370

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNS 442
           E VK  RL  +           N  CVG+  EVL+E   K    +L GR+   + VV + 
Sbjct: 371 EEVKIRRLNEIIALQNRLSAEANARCVGKTYEVLVEGVSKRSRDQLFGRTEQNRVVVFDR 430

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
             H +GD + V+IT+   +TL GE V
Sbjct: 431 GAHRVGDFVTVKITESSSATLKGEEV 456


>gi|331014759|gb|EGH94815.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Pseudomonas
           syringae pv. lachrymans str. M302278PT]
          Length = 442

 Score =  464 bits (1194), Expect = e-128,   Method: Composition-based stats.
 Identities = 198/450 (44%), Positives = 283/450 (62%), Gaps = 13/450 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++ +++++GCQMN YDS RM D+    Q  E     +DAD+I+LNTC IRE+A ++VY
Sbjct: 1   MAKKLYIETHGCQMNEYDSSRMVDLLGEHQALEVTARAEDADVILLNTCSIRERAQDRVY 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S LGR R LK +      ++++ V GCVA  EG  I  R+P V+VV GPQT +RLPE+++
Sbjct: 61  SQLGRWRELKLA----NPEMVIAVGGCVASQEGAAIRDRAPYVDVVFGPQTLHRLPEMID 116

Query: 142 RARFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
            AR  +   VD  +   +KF+ L        R  G +A++++ EGC K+CTFCVVPYTRG
Sbjct: 117 AARITRLPQVDVSFPEIEKFDHLP-----EPRVDGPSAYVSVMEGCSKYCTFCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR    V+ E   L ++GV E+TLLGQNVN +R    DG     +DL+ +++ + G+
Sbjct: 172 EEVSRPFDDVLTEVTHLAEHGVREVTLLGQNVNGYRCTTHDGRVADLADLIRAVAVVDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+RYTTSHP + SD LI+AH D+  L+ +LHLPVQSGSDRIL +M R HT  EY+  + 
Sbjct: 232 DRIRYTTSHPLEFSDSLIQAHADVPELVKHLHLPVQSGSDRILAAMKRNHTTLEYKSRLR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R+  P I+ISSDFIVGFPGET+ DF  TM L++  G+  +FSF YSPR GTP +++ +
Sbjct: 292 KLRAAVPGISISSDFIVGFPGETEKDFDNTMKLIEDAGFDFSFSFIYSPRPGTPAADLKD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVV 439
              E +K ERL  LQ +L +Q    +   VG I  +L+  +  K+ G+L GR+   + V 
Sbjct: 352 DTPEALKKERLAALQHRLNQQGFEISRQMVGSIQRILVTDYSKKDPGELQGRTENNRIVN 411

Query: 440 LNSKNH-NIGDIIKVRITDVKISTLYGELV 468
               N   IG    V I D +  +L G L+
Sbjct: 412 FRCDNPRLIGQFADVHIDDAQPHSLRGSLL 441


>gi|296330914|ref|ZP_06873389.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
           subtilis subsp. spizizenii ATCC 6633]
 gi|305674432|ref|YP_003866104.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
           subtilis subsp. spizizenii str. W23]
 gi|296151919|gb|EFG92793.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
           subtilis subsp. spizizenii ATCC 6633]
 gi|305412676|gb|ADM37795.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
           subtilis subsp. spizizenii str. W23]
          Length = 509

 Score =  464 bits (1194), Expect = e-128,   Method: Composition-based stats.
 Identities = 178/448 (39%), Positives = 261/448 (58%), Gaps = 15/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++F++++YGCQMN +D+  M  +F + GYE  NS+DDA++I+LNTC IRE A  KV+  L
Sbjct: 66  RKFYIRTYGCQMNEHDTEVMAGIFMALGYEATNSVDDANVILLNTCAIRENAENKVFGEL 125

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G ++ LK    K   DL++ V GC++Q E     IL++ P V+++ G    +RLPELL  
Sbjct: 126 GHLKALK----KNNPDLILGVCGCMSQEESVVNRILKKHPFVDMIFGTHNIHRLPELLSE 181

Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           A   K +V   +S E D  E L  V  G      +  ++ I  GCDKFCT+C+VPYTRG 
Sbjct: 182 AYLSKEMVIEVWSKEGDVIENLPKVRNGK-----IKGWVNIMYGCDKFCTYCIVPYTRGK 236

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR   +++ E R+L   G  EITLLGQNVNA  GK  +       DL+  L +I  + 
Sbjct: 237 ERSRRPEEIIQEVRRLASEGYKEITLLGQNVNA-YGKDFEDMTYGLGDLMDELRKID-IP 294

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHPRD  D LI+       L+ ++HLPVQSGS  +LK M R++    Y +++ +
Sbjct: 295 RIRFTTSHPRDFDDRLIEVLAKGGNLLDHIHLPVQSGSSEVLKLMARKYDRERYMELVRK 354

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I++  P+ ++++D IVGFP ETD+ F  T+ L  ++ +  A++F YSPR GTP + M + 
Sbjct: 355 IKAAMPNASLTTDIIVGFPNETDEQFEETLSLYREVEFDSAYTFIYSPREGTPAAKMKDN 414

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVL 440
           V   VK ERL  L   + E          G+++EVL+E   K     L G +   + V  
Sbjct: 415 VPMRVKKERLQRLNALVNEISAKKMKEYEGKVVEVLVEGESKNNPDILAGYTEKSKLVNF 474

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 IG I++V+I   K  +L GE+V
Sbjct: 475 KGPKEAIGKIVRVKIQQAKTWSLDGEMV 502


>gi|70732737|ref|YP_262500.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Pseudomonas
           fluorescens Pf-5]
 gi|123652715|sp|Q4K5I3|MIAB_PSEF5 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|68347036|gb|AAY94642.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Pseudomonas fluorescens
           Pf-5]
          Length = 442

 Score =  464 bits (1194), Expect = e-128,   Method: Composition-based stats.
 Identities = 199/450 (44%), Positives = 284/450 (63%), Gaps = 13/450 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++ +++++GCQMN YDS RM D+    Q  E     +DAD+I+LNTC IRE+A ++VY
Sbjct: 1   MAKKLYIETHGCQMNEYDSSRMVDLLGEHQALEVTARAEDADVILLNTCSIRERAQDRVY 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S LGR R LK +      D+++ V GCVA  EG  I  R+P V+VV GPQT +RLPE+++
Sbjct: 61  SQLGRWRELKLA----NPDMVIAVGGCVASQEGAAIRDRAPYVDVVFGPQTLHRLPEMID 116

Query: 142 RARFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
            AR  K   VD  +   +KF+ L        R  G +A++++ EGC K+CTFCVVPYTRG
Sbjct: 117 VARITKLPQVDVSFPEIEKFDHLP-----EPRIDGPSAYVSVMEGCSKYCTFCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR    V+ E   L +NGV E+TLLGQNVN +RG+  DG     ++L+  ++ I G+
Sbjct: 172 EEVSRPFDDVIAEIIHLAENGVREVTLLGQNVNGYRGQTHDGRMADLAELIRVVAAIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+RYTTSHP + SD LI+AH ++  L+ +LHLPVQSGSDRIL +M R HTA EY+  + 
Sbjct: 232 ERIRYTTSHPLEFSDSLIQAHAEVPELVKHLHLPVQSGSDRILAAMKRNHTALEYKSKLR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R+  P I ISSDFIVGFPGET+ DF+ TM L++ +G+  ++SF YS R GTP +++ +
Sbjct: 292 KLRAAVPGICISSDFIVGFPGETEKDFQQTMKLIEDVGFDFSYSFVYSQRPGTPAADLAD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVV 439
           +  E VK ERL  LQ +L +Q    +   VG    +L+  +  K+ G+L GR+   + V 
Sbjct: 352 ETPEAVKKERLNALQHRLNQQGFEISRQMVGSTQRILVTDYSKKDPGELQGRTENNRIVN 411

Query: 440 LNSKNH-NIGDIIKVRITDVKISTLYGELV 468
               N   IG    V I   +  +L G L+
Sbjct: 412 FRCDNPTLIGQFADVYIDSAQPHSLRGSLL 441


>gi|257092865|ref|YP_003166506.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257045389|gb|ACV34577.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 455

 Score =  464 bits (1194), Expect = e-128,   Method: Composition-based stats.
 Identities = 201/460 (43%), Positives = 290/460 (63%), Gaps = 23/460 (5%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++ F++++GCQMN YDS +M D+   S+   + +S DDAD+I+ NTC +REKA E+V+
Sbjct: 1   MARKLFIRTFGCQMNEYDSDKMADVLAGSEDIVKTDSPDDADIILFNTCSVREKAQERVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL- 140
             LGR+R LK +      DL++ V GCVA  EG  I+ R+P V+VV GPQT +RLP+L+ 
Sbjct: 61  HDLGRVRLLKRA----NPDLVIGVGGCVASQEGAAIVARAPYVDVVFGPQTLHRLPQLIA 116

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           +R R GK  VD  +   +KF+ L        R  G +AF++I EGC KFC+FC+VPYTRG
Sbjct: 117 DRRRLGKSQVDISFPEIEKFDHLPPA-----RVAGASAFVSIMEGCSKFCSFCIVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG-------LDGEKCTFSDLLYS 253
            E+SR    V+ E   L   GV E+TLLGQNVNA+RG            E    + L+  
Sbjct: 172 EEVSRPFDDVLTEVAGLAAQGVREVTLLGQNVNAYRGAMSGVGQAPAGDEAADLALLIEY 231

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
           ++EI G+ R+RYTTSHPR++S  LI  +  +  L+ +LHLPVQSGSDR+L +M R +TA 
Sbjct: 232 IAEIPGIERIRYTTSHPREVSQRLIDIYARVPKLVSHLHLPVQSGSDRVLAAMKRGYTAI 291

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
           EY+ ++ ++R+ RPD+++SSDFIVGFPGET DDF  TM L+D +G+  +FSF YS R GT
Sbjct: 292 EYKSLVRKLRAARPDLSLSSDFIVGFPGETADDFEKTMKLIDDVGFDASFSFLYSSRPGT 351

Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRS 432
           P + + +     +K ERLL LQ ++ E   + + + VG +  VL+E   K+  G+L GR+
Sbjct: 352 PAAELADDTPSTLKLERLLRLQARIDELAQAVSVSMVGTVQRVLVEGLSKKDSGELAGRT 411

Query: 433 PWLQSVVLNSKNHN----IGDIIKVRITDVKISTLYGELV 468
              + V   + + +    +   + VRIT     +L GELV
Sbjct: 412 DNNRVVNFAAGSDDCTRWLDRFVDVRITSAMPHSLRGELV 451


>gi|254429447|ref|ZP_05043154.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Alcanivorax sp. DG881]
 gi|196195616|gb|EDX90575.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Alcanivorax sp. DG881]
          Length = 445

 Score =  464 bits (1194), Expect = e-128,   Method: Composition-based stats.
 Identities = 194/447 (43%), Positives = 284/447 (63%), Gaps = 13/447 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++ F++++GCQMN YDS RM D+  S  G E  ++ ++AD+++LNTC IREKA EKV+
Sbjct: 1   MARKLFIQTHGCQMNEYDSTRMVDLLESSHGLESTDNPEEADVLLLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR + LK++      D+++ V GCVA  EG+ I  R+P V+VV GPQT +RLP L+ 
Sbjct: 61  HQLGRWKKLKDA----KPDMIIGVGGCVASQEGDAIRDRAPYVDVVFGPQTLHRLPGLIT 116

Query: 142 RARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           +A   +   +D  +   +KF+ L           G +AF++I EGC K+CTFCVVPYTRG
Sbjct: 117 QAASTRELAIDVTFPEIEKFDNLP-----EPSVDGPSAFVSIMEGCSKYCTFCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR +  V+ E + L D GV E+ LLGQNVNA++G G DG+    +DL+  + +I G+
Sbjct: 172 EEVSRPVQPVLSEIQHLADMGVREVNLLGQNVNAYQGVGADGDTLDLADLIRLIRDIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+RYTTSHP + SD LI+ + D+  L+ +LHLPVQSGSDRIL  M R H   EY+  + 
Sbjct: 232 DRIRYTTSHPVEFSDALIQVYEDVPELVSHLHLPVQSGSDRILAMMKRNHMVLEYKSKLR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           +++ +RPDI+ SSDFI+GFPGETD DF  TMDL+  IG+  +FSF YS R GTP +++ +
Sbjct: 292 KLKRIRPDISFSSDFIIGFPGETDRDFEDTMDLIHDIGFDMSFSFIYSARPGTPAADLPD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVV 439
            VD +VK +RL  LQ+++ +     +   VG    +L++    K+ G+L GR+   + V 
Sbjct: 352 DVDMDVKKQRLAILQQRINQNAQDISRKMVGSTQRILVDGFSKKDPGQLKGRTENNRVVN 411

Query: 440 LNSKN-HNIGDIIKVRITDVKISTLYG 465
               +   IG  + V I     ++L G
Sbjct: 412 FQCDDTDLIGQFVDVTIAQAYSNSLLG 438


>gi|313669088|ref|YP_004049372.1| hypothetical protein NLA_18110 [Neisseria lactamica ST-640]
 gi|313006550|emb|CBN88014.1| conserved hypothetical protein [Neisseria lactamica 020-06]
          Length = 442

 Score =  464 bits (1193), Expect = e-128,   Method: Composition-based stats.
 Identities = 195/448 (43%), Positives = 279/448 (62%), Gaps = 13/448 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQ--GYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           ++ F++++GCQMN YDS +M  +   +  G E+V   DDAD+I+ NTC +REKA EKV+S
Sbjct: 2   KKVFIRTFGCQMNEYDSDKMLAVLAEEHGGIEQVTQPDDADIILFNTCSVREKAQEKVFS 61

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-E 141
            LGR+R LK         L++ VAGCVA  EGE I++R+P V+VV GPQT +RLP+++ +
Sbjct: 62  DLGRVRPLKEK----NPGLIIGVAGCVASQEGENIIKRAPYVDVVFGPQTLHRLPKMIVD 117

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           +   G   VD  +   +KF+ L        R  G  AF++I EGC K+C+FCVVPYTRG 
Sbjct: 118 KETSGLSQVDISFPEIEKFDHLPPA-----RVEGGAAFVSIMEGCSKYCSFCVVPYTRGE 172

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR L+ V+ E   L   GV EI LLGQNVNA+RG+  +GE C F+ LL  + EI G+ 
Sbjct: 173 EFSRPLNDVLTEIAGLAQQGVKEINLLGQNVNAYRGEMENGEICDFATLLRIVHEIPGIE 232

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHPR+ +D +I+ + DL  L+ +LHLP+QSGSDR+L +M R +TA EY+ II +
Sbjct: 233 RMRFTTSHPREFTDAIIECYRDLPKLVSHLHLPIQSGSDRVLSAMKRGYTALEYKSIIRK 292

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           + ++RPD+ +SSDFIVGFPGET+ +F  T+ LV  I +  +F F YSPR GTP +N+ + 
Sbjct: 293 LCAIRPDLCLSSDFIVGFPGETEREFEQTLKLVKDIAFDLSFVFIYSPRPGTPAANLPDD 352

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVL 440
                K  RL  L + +  +    N   VG +   L+E    K+  +L  R+   + V  
Sbjct: 353 TPHEEKVRRLEALNEVIEAETARINQTMVGTVQRCLVEGISKKDPDQLQARTANNRVVNF 412

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 I  +I + IT+    +L G+ V
Sbjct: 413 TGTPDMINQMIDLEITEAYTFSLRGKTV 440


>gi|291484256|dbj|BAI85331.1| hypothetical protein BSNT_02749 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 509

 Score =  464 bits (1193), Expect = e-128,   Method: Composition-based stats.
 Identities = 178/448 (39%), Positives = 260/448 (58%), Gaps = 15/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++F++++YGCQMN +D+  M  +F + GYE  NS+DDA++I+LNTC IRE A  KV+  L
Sbjct: 66  RKFYIRTYGCQMNEHDTEVMAGIFMALGYEATNSVDDANVILLNTCAIRENAENKVFGEL 125

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G ++ LK    K   DL++ V GC++Q E     IL++ P V+++ G    +RLPELL  
Sbjct: 126 GHLKALK----KNNPDLILGVCGCMSQEESVVNRILKKHPFVDMIFGTHNIHRLPELLSE 181

Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           A   K +V   +S E D  E L  V  G      +  ++ I  GCDKFCT+C+VPYTRG 
Sbjct: 182 AYLSKEMVVEVWSKEGDVIENLPKVRNGK-----IKGWVNIMYGCDKFCTYCIVPYTRGK 236

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR    ++ E R+L   G  EITLLGQNVNA  GK  +       DL+  L +I  + 
Sbjct: 237 ERSRRPEDIIQEVRRLASEGYKEITLLGQNVNA-YGKDFEDMTYGLGDLMDELRKID-IP 294

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHPRD  D LI+       L+ ++HLPVQSGS  +LK M R++    Y +++ +
Sbjct: 295 RIRFTTSHPRDFDDRLIEVLAKGGNLLDHIHLPVQSGSSEVLKLMARKYDRERYMELVRK 354

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I++  P+ ++++D IVGFP ETD+ F  T+ L  ++ +  A++F YSPR GTP + M + 
Sbjct: 355 IKTAMPNASLTTDIIVGFPNETDEQFEETLSLYREVEFDSAYTFIYSPREGTPAAKMKDN 414

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVL 440
           V   VK ERL  L   + E          G+++EVL+E   K     L G +   + V  
Sbjct: 415 VPMRVKKERLQRLNALVNEISAKKMKEYEGKVVEVLVEGESKNNPDILAGYTEKSKLVNF 474

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 IG I++V+I   K  +L GE+V
Sbjct: 475 KGPKEAIGKIVRVKIQQAKTWSLDGEMV 502


>gi|163797130|ref|ZP_02191085.1| tRNA 2-methylthioadenosine synthase [alpha proteobacterium BAL199]
 gi|159177646|gb|EDP62199.1| tRNA 2-methylthioadenosine synthase [alpha proteobacterium BAL199]
          Length = 454

 Score =  464 bits (1193), Expect = e-128,   Method: Composition-based stats.
 Identities = 252/440 (57%), Positives = 314/440 (71%), Gaps = 10/440 (2%)

Query: 36  MNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRI 95
           MNVYDS RM D+    GYE  +S DDADLI+LNTCHIREKA EKVYS LGR+R LK+   
Sbjct: 1   MNVYDSTRMVDVMAPHGYEPGDSPDDADLIILNTCHIREKATEKVYSELGRLRALKDEAA 60

Query: 96  KEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF-----GKRVV 150
           ++G  +L+ VAGCVAQAEGEEI RR+P V++V GPQTY+RLPEL+ RA       G  VV
Sbjct: 61  RQGRKMLIGVAGCVAQAEGEEIARRAPTVDLVFGPQTYHRLPELVVRALDRSLSGGAGVV 120

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
           DTD+  E KF+ L       +R +G  AFL++QEGCDKFCTFCVVPYTRG E SR  + V
Sbjct: 121 DTDFPAEAKFDHLP----EESRSQGAAAFLSVQEGCDKFCTFCVVPYTRGAEFSRPAADV 176

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK-CTFSDLLYSLSEIKGLVRLRYTTSH 269
           + EAR+++  G  EITLLGQNVNA+ G+   G        L+ +L+EI GL R+RYTTSH
Sbjct: 177 LVEARRMVAGGTVEITLLGQNVNAYHGEAATGGGTWGLGRLVRALAEIDGLERIRYTTSH 236

Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329
           PRD+ D LI AH D+  LMPYLHLPVQSGSDRIL +MNR+HTA  YR+IIDR+R  RPD+
Sbjct: 237 PRDVDDELIAAHRDVPELMPYLHLPVQSGSDRILAAMNRKHTAEAYRRIIDRLRDARPDL 296

Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAE 389
           A SSDFIVGFPGETD DF  T+ LV ++GYAQA+SFKYS R GTP ++M + V E VK E
Sbjct: 297 AFSSDFIVGFPGETDQDFVETLRLVREVGYAQAYSFKYSARPGTPAADMGDAVPETVKTE 356

Query: 390 RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGD 449
           RL  LQ+ +  QQ++FN    G +  VL E+ G   G+L+GR PW+QSV  ++ +  +G 
Sbjct: 357 RLTALQQLIGAQQIAFNAGATGSVQSVLFERRGNRAGQLIGRGPWMQSVHADAPDRMLGR 416

Query: 450 IIKVRITDVKISTLYGELVV 469
           I+ VRI D   ++L G +VV
Sbjct: 417 IVPVRILDGHANSLSGAVVV 436


>gi|90416864|ref|ZP_01224793.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [marine gamma
           proteobacterium HTCC2207]
 gi|90331211|gb|EAS46455.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [marine gamma
           proteobacterium HTCC2207]
          Length = 451

 Score =  464 bits (1193), Expect = e-128,   Method: Composition-based stats.
 Identities = 204/459 (44%), Positives = 291/459 (63%), Gaps = 13/459 (2%)

Query: 13  MVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCH 71
           M           ++  + ++GCQMN YDS RM D+   S      +S +DAD+I+LNTC 
Sbjct: 1   MTETATKPTKPTKKLHIVTHGCQMNEYDSARMRDLLGDSHQMIATDSAEDADVILLNTCS 60

Query: 72  IREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ 131
           IREKA EKV+  LGR ++LK +      DL++ V GCVA  EG  I +R+P V++V GPQ
Sbjct: 61  IREKAQEKVFHQLGRWKHLKEA----NPDLIIGVGGCVASQEGAAIAKRAPFVDLVFGPQ 116

Query: 132 TYYRLPELLERARF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190
           T +RLPE++E  +  G  VVD  +   +KF+RL   +       GV+AF++I EGC K+C
Sbjct: 117 TLHRLPEMMETNQADGTVVVDISFPEIEKFDRLPTPE-----ADGVSAFVSIMEGCSKYC 171

Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDL 250
           +FCVVPYTRG E+SR ++ V+ E   L   GV E+ LLGQNVNA+ G+  DG  C F++L
Sbjct: 172 SFCVVPYTRGEEVSRPMADVLAEIAALAQQGVREVNLLGQNVNAYLGEMPDGSICDFAEL 231

Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
           L  +++I G+ R+RYTTSHP + SD LI+ +  +  L+ +LHLPVQSGSD+IL +M R H
Sbjct: 232 LPYVADIAGIDRIRYTTSHPVEFSDRLIETYARVPELVSHLHLPVQSGSDKILMAMKRGH 291

Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370
           TA EY+  I R+R VRPDI+ISSDFI+GFP E+++DF ATM L+  IG+  +FSF YS R
Sbjct: 292 TAIEYKSKIRRLREVRPDISISSDFIIGFPNESEEDFSATMKLISDIGFDTSFSFIYSAR 351

Query: 371 LGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLV 429
            GTP +++ +   E VK +RL  LQ ++ +     +   VG+  ++L+     K+ G+L 
Sbjct: 352 PGTPAADLPDNTSEAVKKQRLKILQDRISQNAAEISRRMVGKREKLLVTGISKKDPGQLQ 411

Query: 430 GRSPWLQSVVLNSKNH-NIGDIIKVRITDVKISTLYGEL 467
           GR+   + V   S NH  IG  +   +T+   ++L GEL
Sbjct: 412 GRTENNRVVNFRSDNHALIGTFVDSIVTEALTNSLRGEL 450


>gi|71898877|ref|ZP_00681044.1| Protein of unknown function UPF0004:tRNA-i(6)A37 modification
           enzyme MiaB [Xylella fastidiosa Ann-1]
 gi|71731289|gb|EAO33353.1| Protein of unknown function UPF0004:tRNA-i(6)A37 modification
           enzyme MiaB [Xylella fastidiosa Ann-1]
          Length = 497

 Score =  464 bits (1193), Expect = e-128,   Method: Composition-based stats.
 Identities = 197/470 (41%), Positives = 288/470 (61%), Gaps = 22/470 (4%)

Query: 11  AHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNT 69
           AH      D+     + F+K++GCQMN YDS +M D+  + +  E  ++ ++AD+I++NT
Sbjct: 34  AHTGDPSHDRPPSRGKLFIKTHGCQMNEYDSAKMADVLTTTEALELTDNPEEADIILINT 93

Query: 70  CHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG 129
           C IREKA EKV+S LGR R LK +    G D+++ V GCVA  EGE I++R+P V++V G
Sbjct: 94  CSIREKAQEKVFSQLGRWRALKTN----GRDVIIGVGGCVASQEGETIVKRAPYVDLVFG 149

Query: 130 PQTYYRLPELL-ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
           PQT +RLP+++  R    +  VD  +   +KF+ L        R  G +AF++I EGC K
Sbjct: 150 PQTLHRLPDMIRARREQNRPQVDISFPEIEKFDHLPT-----PRAEGPSAFVSIMEGCSK 204

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK---- 244
           +C+FCVVPYTRG E+SR    V+ E   L   GV EI LLGQNVNA+RG    G      
Sbjct: 205 YCSFCVVPYTRGEEVSRPFEDVLTEIAHLATQGVREINLLGQNVNAYRGAMDPGPSNNTN 264

Query: 245 ------CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
                      L+ ++++ + + R+R+TTSHP + SD L++A+ D+  L  +LHLPVQSG
Sbjct: 265 PAPPPYADLGLLIRAIAQFESIGRIRFTTSHPLEFSDSLVEAYRDVPQLANHLHLPVQSG 324

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           SDRIL +M R +TA E++  I ++R+VRPDI+ISSDFI+GFPGE+D DF+ TM L++ IG
Sbjct: 325 SDRILSAMKRGYTALEFKSKIRKLRAVRPDISISSDFIIGFPGESDTDFQKTMQLIEDIG 384

Query: 359 YAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI 418
           + Q+FSF YS R GTP SN+ +   + +K  RL  LQK +       +   +G +  VL+
Sbjct: 385 FDQSFSFIYSRRPGTPASNLEDHTPDEIKRTRLEHLQKHINAYAADISKRMIGTVQTVLV 444

Query: 419 EKHGKEK-GKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
           E   K+   +L G++  ++ V        IG  I V IT+   ++L G +
Sbjct: 445 EGPSKKNPNELTGKTENMRPVNFPGHPRLIGQFIDVHITEALTNSLRGRV 494


>gi|296132994|ref|YP_003640241.1| RNA modification enzyme, MiaB family [Thermincola sp. JR]
 gi|296031572|gb|ADG82340.1| RNA modification enzyme, MiaB family [Thermincola potens JR]
          Length = 449

 Score =  463 bits (1192), Expect = e-128,   Method: Composition-based stats.
 Identities = 177/454 (38%), Positives = 272/454 (59%), Gaps = 12/454 (2%)

Query: 17  IVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA 76
           +V+Q    Q++F++++GCQMN  DS  M  +    GYE V + +DAD+I+LNTC +RE A
Sbjct: 1   MVNQNNDKQKYFLQTFGCQMNERDSETMAGLLEGMGYEPVANAEDADIIILNTCTVRETA 60

Query: 77  AEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAE--GEEILRRSPIVNVVVGPQTYY 134
             KV+  +G ++ LK+       D+++ + GC+AQ +   E+I R++P + ++ G    +
Sbjct: 61  ENKVWGRIGELKALKSK----KPDVIIGICGCMAQQKETAEKIRRKAPHIELIFGTHNIH 116

Query: 135 RLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCV 194
            LPE++ R    ++ +   ++ E              RK  V AF++I  GC+ FCT+C+
Sbjct: 117 ELPEMINRLVAERKPLLNVWNAEGSIVENLPAR----RKSKVKAFVSIMFGCNNFCTYCI 172

Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL 254
           VPY RG E SR ++ +V E + L + G  E+TLLGQNVN+  GK L  EK  FSDLL  L
Sbjct: 173 VPYVRGRERSRQIADIVREVKSLAEQGYKEVTLLGQNVNS-YGKDLP-EKTDFSDLLEVL 230

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
           +EI G+ R+RY TSHPRD +  LI      + +  + HLPVQSGS+ ILK MNR +T   
Sbjct: 231 NEIDGIRRIRYMTSHPRDFTSKLIDVIARSEKVCEHFHLPVQSGSNSILKKMNRGYTREY 290

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
           Y +++  IRS  P  +I++D IVGFPGET  DF  TMDL+DK+ Y  AF+F Y+ R GTP
Sbjct: 291 YFELVAEIRSKIPHASITTDIIVGFPGETRQDFENTMDLLDKVRYDSAFTFVYNKRSGTP 350

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPW 434
            ++M +QV +  K++R++ L +   +  +  N   VG+  EVL E     + K+  R+  
Sbjct: 351 AASMTDQVPDEEKSKRIVELIEFQNKISLEKNLCEVGREHEVLAEGLKNSQNKVEARTRT 410

Query: 435 LQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            + V+LN  ++ IG++ +V+I       L GE++
Sbjct: 411 NKLVLLNGDSNMIGNMYRVKIVKAGPWHLDGEIL 444


>gi|160888105|ref|ZP_02069108.1| hypothetical protein BACUNI_00513 [Bacteroides uniformis ATCC 8492]
 gi|156862416|gb|EDO55847.1| hypothetical protein BACUNI_00513 [Bacteroides uniformis ATCC 8492]
          Length = 457

 Score =  463 bits (1192), Expect = e-128,   Method: Composition-based stats.
 Identities = 166/447 (37%), Positives = 259/447 (57%), Gaps = 10/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F+++YGCQMNV DS  +  +    GY   +++++AD + +NTC IR+ A +K+ + L
Sbjct: 18  KKLFIETYGCQMNVADSEVIASVMQMAGYSVADTLEEADAVFMNTCSIRDNAEQKILNRL 77

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
               +LK    K+   L+V V GC+A+   ++++     V++VVGP  Y  LPEL+    
Sbjct: 78  EFFHSLK----KKKRGLIVGVLGCMAERVKDDLITNH-HVDLVVGPDAYLTLPELIASVE 132

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G++ ++ + S  + +  +       N   G   F++I  GC+ FCT+C+VPYTRG E S
Sbjct: 133 AGEKAINVELSTTETYRDVIPSRICGNHISG---FVSIMRGCNNFCTYCIVPYTRGRERS 189

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R +  +++E   L+  G  E+TLLGQNVN++R +  DGE  TF  LL +++E    VR+R
Sbjct: 190 RDVESILNEVADLVAKGYKEVTLLGQNVNSYRFEKPDGETITFPMLLRTVAEAAPGVRIR 249

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +TTSHP+DMSD  ++   D+  +  ++HLPVQSGS RILK MNR++    Y   +  IR 
Sbjct: 250 FTTSHPKDMSDETLQVIADMPNVCKHIHLPVQSGSSRILKLMNRKYDREWYMDRVAAIRR 309

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN-MLEQVD 383
           + PD  +S+D   GF  ET++D + ++ L+++ GY  AF FKYS R GT  S  + + V 
Sbjct: 310 IIPDCGLSTDIFSGFHSETEEDHQLSLSLMEECGYDSAFMFKYSERPGTHASKYLPDDVP 369

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNS 442
           E VK  RL  +           N  CVG+  EVL+E   K    +L GR+   + VV + 
Sbjct: 370 EEVKIRRLNEIIALQNRLSAEANARCVGKTYEVLVEGVSKRSRDQLFGRTEQNRVVVFDR 429

Query: 443 KNHNIGDIIKVRITDVKISTLYGELVV 469
             H +GD + V++T+   +TL GE V 
Sbjct: 430 GTHRVGDFVMVKVTESSSATLKGEEVA 456


>gi|318604777|emb|CBY26275.1| tRNA-i(6)A37 methylthiotransferase [Yersinia enterocolitica subsp.
           palearctica Y11]
          Length = 461

 Score =  463 bits (1192), Expect = e-128,   Method: Composition-based stats.
 Identities = 195/436 (44%), Positives = 274/436 (62%), Gaps = 12/436 (2%)

Query: 36  MNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSR 94
           MN YDS +M D+  S  GY+     ++ADL++LNTC IREKA EKV+S LG  + LK   
Sbjct: 1   MNEYDSSKMADLLASTHGYQLTEIPEEADLLLLNTCSIREKAQEKVFSLLGHWKLLKEK- 59

Query: 95  IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR-FGKRVVDTD 153
                 +++ V GCVA  EGE + +R+P V+V+ GPQT +RLPE++   +     VVD  
Sbjct: 60  ---NPGIIIGVGGCVASQEGEHLRQRAPCVDVIFGPQTLHRLPEMINHVQGTHSPVVDIS 116

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           +   +KF+RL        R  G TAF++I EGC+K+CTFCVVPYTRG E+SR    ++ E
Sbjct: 117 FPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTFCVVPYTRGEEVSRPSDDILFE 171

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
             +L   GV E+ LLGQNVNA+RG   DG+ C+F++LL  ++ I G+ R+R+TTSHP + 
Sbjct: 172 IAQLAAQGVREVNLLGQNVNAYRGATYDGDICSFAELLRLVAAIDGIDRVRFTTSHPIEF 231

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
           +D +I  + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II ++R  RPDI ISS
Sbjct: 232 TDDIIDVYRDTPELVSFLHLPVQSGSDRILTMMKRAHTALEYKAIIRKLRQARPDIQISS 291

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLC 393
           DFI+GFPGET  DF  TM LV  + +  ++SF YSPR GTP +++ + V E  K +RL  
Sbjct: 292 DFIIGFPGETQQDFEQTMKLVADVRFDTSYSFIYSPRPGTPAADLPDDVSEEEKKQRLHI 351

Query: 394 LQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNSKNHNIGDIIK 452
           LQ+++ +Q +  +   VG +  +L+E   ++   +L GR+   + V        IG  + 
Sbjct: 352 LQQRITQQAMEISREMVGTVQRILVEGTSRKNVMELAGRTENNRVVNFEGTPEMIGKFVD 411

Query: 453 VRITDVKISTLYGELV 468
           V I DV  S+L G L+
Sbjct: 412 VEIVDVYASSLRGILL 427


>gi|330811908|ref|YP_004356370.1| (Dimethylallyl)adenosine tRNA methylthiotransferase [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
 gi|327380016|gb|AEA71366.1| (Dimethylallyl)adenosine tRNA methylthiotransferase [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 442

 Score =  463 bits (1192), Expect = e-128,   Method: Composition-based stats.
 Identities = 194/450 (43%), Positives = 282/450 (62%), Gaps = 13/450 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++ +++++GCQMN YDS RM D+    Q  E     +DAD+I+LNTC IRE+A ++VY
Sbjct: 1   MAKKLYIETHGCQMNEYDSSRMVDLLGEHQALEVTARAEDADVILLNTCSIRERAQDRVY 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S LGR R LK +      ++++ V GCVA  EG  I  R+P V+VV GPQT +RLPE+++
Sbjct: 61  SQLGRWRELKLA----NPEMVIAVGGCVASQEGAAIRDRAPYVDVVFGPQTLHRLPEMID 116

Query: 142 RARFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
            AR  K   VD  +   +KF+ L        R  G +A++++ EGC K+CTFCVVPYTRG
Sbjct: 117 AARSTKLPQVDVSFPEIEKFDHLP-----EPRIDGPSAYVSVMEGCSKYCTFCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR    V+ E   L ++GV E+TLLGQNVN +RG   DG     ++L+  ++ + G+
Sbjct: 172 EEVSRPFDDVIAEIIHLAEHGVREVTLLGQNVNGYRGLTHDGRLADLAELIRVVAAVDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+RYTTSHP + SD LI+AH ++  L+ +LHLPVQSGSDRIL +M R HTA EY+  + 
Sbjct: 232 DRIRYTTSHPLEFSDSLIQAHAEVPELVKHLHLPVQSGSDRILAAMKRNHTALEYKSKLR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R+  P I ISSDFIVGFPGET+ DF+ TM L++ +G+  ++SF YS R GTP +++ +
Sbjct: 292 KLRAAVPGICISSDFIVGFPGETEKDFQQTMKLIEDVGFDFSYSFVYSQRPGTPAADLAD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVV 439
              E +K ERL  LQ +L +Q    +   VG +  +L+  +  K+ G+L GR+   + V 
Sbjct: 352 DTPEELKKERLNALQHRLNQQGFEISRQMVGSVQRILVTDYSKKDPGELQGRTENNRIVN 411

Query: 440 LN-SKNHNIGDIIKVRITDVKISTLYGELV 468
                   IG    V I   +  +L G L+
Sbjct: 412 FRCDTPALIGQFADVHIDAAQPHSLRGSLI 441


>gi|94309398|ref|YP_582608.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Cupriavidus metallidurans
           CH34]
 gi|123384028|sp|Q1LR87|MIAB_RALME RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|93353250|gb|ABF07339.1| isopentenyl-adenosine A37 tRNA methylthiolase [Cupriavidus
           metallidurans CH34]
          Length = 450

 Score =  463 bits (1191), Expect = e-128,   Method: Composition-based stats.
 Identities = 201/456 (44%), Positives = 287/456 (62%), Gaps = 20/456 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ FVK+YGCQMN YDS +M D+  + QG E  ++++DAD+I+ NTC IREKA EKV+S 
Sbjct: 2   KKVFVKTYGCQMNEYDSDKMVDVLNATQGMEPTDNVEDADVILFNTCSIREKAQEKVFSE 61

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR++ LK +      DL++ V GCVA  EG  I+ R+P V+VV GPQT +RLP+L+ R 
Sbjct: 62  LGRMKALKAA----KPDLVIGVGGCVASQEGASIVSRAPYVDVVFGPQTLHRLPDLINRR 117

Query: 144 RF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           +  G   VD  +   +KF+ L        R  G +AF++I EGC K+C++CVVPYTRG E
Sbjct: 118 QQTGLSQVDISFPEIEKFDHLPPA-----RVDGPSAFVSIMEGCSKYCSYCVVPYTRGEE 172

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG-KGLDGEKCTFSDLLYSLSEIKGLV 261
           +SR    V+ E   L + GV E+TLLGQNVNA+RG  G   E   F+ L+  +++I G+ 
Sbjct: 173 VSRPFEDVLAEVAGLAEQGVREVTLLGQNVNAYRGAMGGTSEIADFALLIEYVADIPGIE 232

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+RYTTSHP++ +  LI+ +G  D L+ +LHLPVQ  SDR+L  M R ++  EY+ II R
Sbjct: 233 RIRYTTSHPKEFTSRLIELYGRCDKLVNHLHLPVQHASDRVLAGMKRGYSVLEYKSIIRR 292

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R++RPD+++SSDFIVGFPGETD DF   M +V +IGY  +FSF +SPR GTP +N+ + 
Sbjct: 293 LRALRPDMSMSSDFIVGFPGETDADFDKLMAMVHEIGYDTSFSFIFSPRPGTPAANLHDD 352

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVL 440
               VK  RL  LQ  + E     + + VG +  +L+E    K+  +L GR+   + V  
Sbjct: 353 TPHEVKLRRLQLLQATIEENVQRISQSMVGTVQRILVEGPARKDPTELHGRTENNRVVNF 412

Query: 441 -------NSKNHNIGDIIKVRITDVKISTLYGELVV 469
                    ++  IG ++ V +T     +L GE VV
Sbjct: 413 ALPGVPQAQRDRMIGQMVDVNVTQAFPHSLRGEFVV 448


>gi|77461171|ref|YP_350678.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Pseudomonas fluorescens
           Pf0-1]
 gi|123744592|sp|Q3K6B7|MIAB_PSEPF RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|77385174|gb|ABA76687.1| conserved hypothetical protein [Pseudomonas fluorescens Pf0-1]
          Length = 442

 Score =  463 bits (1191), Expect = e-128,   Method: Composition-based stats.
 Identities = 197/450 (43%), Positives = 281/450 (62%), Gaps = 13/450 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++ +++++GCQMN YDS RM D+    Q  E     +DAD+I+LNTC IRE+A ++VY
Sbjct: 1   MAKKLYIETHGCQMNEYDSSRMVDLLGEHQALEVTARAEDADVILLNTCSIRERAQDRVY 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S LGR R LK +      D+++ V GCVA  EG  I  R+P V+VV GPQT +RLPE+++
Sbjct: 61  SQLGRWRELKLA----NPDMVIAVGGCVASQEGAAIRDRAPYVDVVFGPQTLHRLPEMID 116

Query: 142 RARFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
            AR  K   VD  +   +KF+ L        R  G +A++++ EGC K+CTFCVVPYTRG
Sbjct: 117 AARISKLPQVDVSFPEIEKFDHLP-----EPRIDGPSAYVSVMEGCSKYCTFCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR    V+ E   L +NGV E+TLLGQNVN +RG   DG     ++L+  ++ + G+
Sbjct: 172 EEVSRPFDDVIAEIIHLAENGVREVTLLGQNVNGYRGLTHDGRLADLAELIRVVAAVDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+RYTTSHP + SD LI+AH ++  L+ +LHLPVQSGSDRIL +M R HTA EY+  + 
Sbjct: 232 DRIRYTTSHPLEFSDSLIQAHAEVPELVKHLHLPVQSGSDRILAAMKRNHTALEYKSKLR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R+  P I ISSDFIVGFPGET+ DF  TM L+  +G+  ++SF YS R GTP +++ +
Sbjct: 292 KLRAAVPGICISSDFIVGFPGETEKDFEQTMKLIADVGFDFSYSFVYSQRPGTPAADLAD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVV 439
              E +K ERL  LQ +L +Q    +   VG +  +L+  +  K+ G+L GR+   + V 
Sbjct: 352 DTPEELKKERLNALQHRLNQQGFEISRQMVGSVQRILVTDYSKKDPGELQGRTENNRIVN 411

Query: 440 LNSKNH-NIGDIIKVRITDVKISTLYGELV 468
               N   IG    V I   +  +L G L+
Sbjct: 412 FRCDNPTLIGQFADVHIDAAQPHSLRGSLI 441


>gi|149183373|ref|ZP_01861809.1| YmcB [Bacillus sp. SG-1]
 gi|148848916|gb|EDL63130.1| YmcB [Bacillus sp. SG-1]
          Length = 521

 Score =  463 bits (1191), Expect = e-128,   Method: Composition-based stats.
 Identities = 177/448 (39%), Positives = 269/448 (60%), Gaps = 14/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++F++++YGCQMN +D+  M  +F + GYE  ++ DDAD+I+LNTC IRE A  KV+  L
Sbjct: 67  KKFYIRTYGCQMNEHDTEVMAGIFMALGYEATDNTDDADVILLNTCAIRENAENKVFGEL 126

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G +++LK    +E  +LL+ V GC++Q E    +IL+    V+++ G    +RLP +L  
Sbjct: 127 GHLKHLK----REKPELLIGVCGCMSQEESVVNKILKTYHQVDMIFGTHNIHRLPNILNE 182

Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           A   K +V   +S E D  E L  V     R+  + A++ I  GCDKFCT+C+VPYTRG 
Sbjct: 183 AYMSKAMVVEVWSKEGDVIENLPKV-----RRGNIKAWVNIMYGCDKFCTYCIVPYTRGK 237

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR   +++ E R L   G  E+TLLGQNVNA+     D E     DL+  L +I  + 
Sbjct: 238 ERSRRPEEIIQEVRHLAAQGYQEVTLLGQNVNAYGKDIEDLENYGLGDLMDELRKID-IP 296

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHPRD  D LI+       L+ ++HLPVQSGS  +LK M R++T   + +++ +
Sbjct: 297 RIRFTTSHPRDFDDHLIEVLAKKGNLVEHIHLPVQSGSSAVLKIMARKYTRERFLELVGK 356

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I++  P +A+++D IVG+P ET++ F  T+ L  ++G+  AF++ YSPR GTP + M + 
Sbjct: 357 IKAAMPGVALTTDIIVGYPNETEEQFEETLSLYREVGFESAFTYIYSPREGTPAAKMNDN 416

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440
           V   VK ERL  L + + E          G+I+EVL+E   K+  + L G +   + V  
Sbjct: 417 VPMEVKKERLQRLNQLVNEYSGEALKQYEGKIVEVLVEGESKKNPEILAGYTRRSKLVNF 476

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
            +    IG I+KV+ITD K  +L GE++
Sbjct: 477 KAPKTAIGKIVKVKITDTKSWSLNGEMI 504


>gi|317474690|ref|ZP_07933964.1| MiaB family RNA modification enzyme [Bacteroides eggerthii
           1_2_48FAA]
 gi|316909371|gb|EFV31051.1| MiaB family RNA modification enzyme [Bacteroides eggerthii
           1_2_48FAA]
          Length = 456

 Score =  463 bits (1191), Expect = e-128,   Method: Composition-based stats.
 Identities = 166/446 (37%), Positives = 261/446 (58%), Gaps = 10/446 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F+++YGCQMNV DS  +  +    GY   +++++AD + +NTC IR+ A +K+ + L
Sbjct: 19  KKLFIETYGCQMNVADSEVIASVMQMAGYFVADTLEEADAVFMNTCSIRDNAEQKILNRL 78

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
               +LK    K+  +L+V V GC+A+   ++++     V++VVGP  Y  LP+L+    
Sbjct: 79  EFFHSLK----KKKKNLIVGVLGCMAERVKDDLITNH-HVDLVVGPDAYLTLPDLIAAVE 133

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G++ ++ + S  + +  +       N   G   F++I  GC+ FCT+C+VPYTRG E S
Sbjct: 134 AGEKAINVELSTTETYRDVIPSRICGNHISG---FVSIMRGCNNFCTYCIVPYTRGRERS 190

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R +  +++E   L+  G  E+TLLGQNVN++R +  DGE  TF  LL  ++     VR+R
Sbjct: 191 RDVESILNEVSDLVAKGYKEVTLLGQNVNSYRFEKADGEVITFPMLLRIVAGAAPGVRIR 250

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +TTSHP+DMSD  ++   ++  +  ++HLPVQSGS RILK MNR++T   Y + +D IR 
Sbjct: 251 FTTSHPKDMSDETLQVIAEVPNVCKHIHLPVQSGSSRILKLMNRKYTREWYLERVDAIRR 310

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN-MLEQVD 383
           + PD  +S+D   GF  ET++D + ++ L+++ GY  AF FKYS R GT  S  + + V 
Sbjct: 311 IVPDCGLSTDIFSGFHSETEEDHQLSLSLMEECGYDAAFMFKYSERPGTYASKHLPDDVP 370

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNS 442
           E VK  RL  +           N  CVG+  EVL+E   K    +L GR+   + VV + 
Sbjct: 371 EEVKIRRLNEIIALQNRLSAEANARCVGKTYEVLVEGVSKRSRDQLFGRTEQNRVVVFDR 430

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
             H +GD + V+IT+   +TL GE V
Sbjct: 431 GTHRVGDFVTVKITESSSATLKGEEV 456


>gi|270295132|ref|ZP_06201333.1| tRNA-I(6)A37 thiotransferase [Bacteroides sp. D20]
 gi|317478131|ref|ZP_07937306.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacteroides sp. 4_1_36]
 gi|270274379|gb|EFA20240.1| tRNA-I(6)A37 thiotransferase [Bacteroides sp. D20]
 gi|316905729|gb|EFV27508.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacteroides sp. 4_1_36]
          Length = 457

 Score =  462 bits (1190), Expect = e-128,   Method: Composition-based stats.
 Identities = 166/447 (37%), Positives = 259/447 (57%), Gaps = 10/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F+++YGCQMNV DS  +  +    GY   +++++AD + +NTC IR+ A +K+ + L
Sbjct: 18  KKLFIETYGCQMNVADSEVIASVMQMAGYSVADTLEEADAVFMNTCSIRDNAEQKILNRL 77

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
               +LK    K+   L+V V GC+A+   ++++     V++VVGP  Y  LPEL+    
Sbjct: 78  EFFHSLK----KKKRGLIVGVLGCMAERVKDDLITNH-HVDLVVGPDAYLTLPELIASVE 132

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G++ ++ + S  + +  +       N   G   F++I  GC+ FCT+C+VPYTRG E S
Sbjct: 133 AGEKAMNVELSTTETYRDVIPSRICGNHISG---FVSIMRGCNNFCTYCIVPYTRGRERS 189

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R +  +++E   L+  G  E+TLLGQNVN++R +  DGE  TF  LL +++E    VR+R
Sbjct: 190 RDVESILNEVADLVAKGYKEVTLLGQNVNSYRFEKPDGETITFPMLLRTVAEAAPGVRIR 249

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +TTSHP+DMSD  ++   D+  +  ++HLPVQSGS RILK MNR++    Y   +  IR 
Sbjct: 250 FTTSHPKDMSDETLQVIADMPNVCKHIHLPVQSGSSRILKLMNRKYDREWYMDRVAAIRR 309

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN-MLEQVD 383
           + PD  +S+D   GF  ET++D + ++ L+++ GY  AF FKYS R GT  S  + + V 
Sbjct: 310 IIPDCGLSTDIFSGFHSETEEDHQLSLSLMEECGYDSAFMFKYSERPGTHASKYLPDDVP 369

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNS 442
           E VK  RL  +           N  CVG+  EVL+E   K    +L GR+   + VV + 
Sbjct: 370 EEVKIRRLNEIIALQNRLSAEANARCVGKTYEVLVEGVSKRSRDQLFGRTEQNRVVVFDR 429

Query: 443 KNHNIGDIIKVRITDVKISTLYGELVV 469
             H +GD + V++T+   +TL GE V 
Sbjct: 430 GTHRVGDFVMVKVTESSSATLKGEEVA 456


>gi|288959688|ref|YP_003450029.1| bifunctional enzyme involved in thiolation and methylation of tRNA
           [Azospirillum sp. B510]
 gi|288911996|dbj|BAI73485.1| bifunctional enzyme involved in thiolation and methylation of tRNA
           [Azospirillum sp. B510]
          Length = 456

 Score =  462 bits (1190), Expect = e-128,   Method: Composition-based stats.
 Identities = 238/432 (55%), Positives = 312/432 (72%), Gaps = 6/432 (1%)

Query: 36  MNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRI 95
           MNVYDS RM D+    GY+ V+  D AD+++LNTCHIREKAAEKV+S LGR+R +K+ + 
Sbjct: 1   MNVYDSARMADVLAPLGYQPVDEPDGADMVILNTCHIREKAAEKVFSELGRLRQMKDRKA 60

Query: 96  K-EGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA-RFGKRVVDTD 153
           + E G +++ VAGCVAQAEGEEI+ R+P V++V GPQTY+ LPE++ +A R    V++TD
Sbjct: 61  EAEDGRMILAVAGCVAQAEGEEIVARAPFVDMVFGPQTYHTLPEMVAKASRAAGSVLNTD 120

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           +  E KF+ L          +GV+AFL +QEGCDKFCTFCVVPYTRG E SR   Q++ E
Sbjct: 121 FPAESKFDLLP----EEAGSQGVSAFLAVQEGCDKFCTFCVVPYTRGAEFSRPAGQILAE 176

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
           A++L+  G  EITLLGQNVNAW G G DG       L+  L+EI GL R+RYTTSHPRDM
Sbjct: 177 AKRLVAGGTREITLLGQNVNAWHGDGPDGATWGLGRLIRQLAEIDGLERIRYTTSHPRDM 236

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
           +D LI+AH ++  LMPYLHLPVQ+GSDRIL +MNR+H+A +YR+++DR+R  +PD+A+S 
Sbjct: 237 ADDLIRAHAEVPQLMPYLHLPVQAGSDRILAAMNRKHSADDYRRLVDRLRDAKPDLAMSG 296

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLC 393
           DFIVGFPGE+D DF AT+ LV  IGYAQA+SFKYSPR GTP S    QV + VK  RL  
Sbjct: 297 DFIVGFPGESDADFAATLKLVTDIGYAQAYSFKYSPRPGTPASVEGSQVPDEVKESRLAA 356

Query: 394 LQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKV 453
           L + L  QQV+FN   VG+ + VL ++ G+  G+L+GRSPW+QSV   +    +G I++V
Sbjct: 357 LHQLLNAQQVAFNHGFVGRSVPVLFDRVGRRGGQLLGRSPWMQSVHAEANERLLGRIVEV 416

Query: 454 RITDVKISTLYG 465
           RI     ++L G
Sbjct: 417 RIGAALPNSLAG 428


>gi|329956412|ref|ZP_08297009.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacteroides clarus YIT
           12056]
 gi|328524309|gb|EGF51379.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacteroides clarus YIT
           12056]
          Length = 455

 Score =  462 bits (1190), Expect = e-128,   Method: Composition-based stats.
 Identities = 168/446 (37%), Positives = 261/446 (58%), Gaps = 10/446 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F+++YGCQMNV DS  +  +    GY    ++++AD + +NTC IR+ A +K+ + L
Sbjct: 18  KKLFIETYGCQMNVADSEVIASVMQMAGYSVAETLEEADAVFMNTCSIRDNAEQKILNRL 77

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
               +LK    K+  +L+V V GC+A+   ++++     V++VVGP  Y  LP+L+    
Sbjct: 78  EFFHSLK----KKKKNLIVGVLGCMAERVKDDLITNH-HVDLVVGPDAYLTLPDLIAAVE 132

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G++ ++ + S  + +  +       N   G   F++I  GC+ FCT+C+VPYTRG E S
Sbjct: 133 AGEKAINVELSTTETYRDVIPSRICGNHISG---FVSIMRGCNNFCTYCIVPYTRGRERS 189

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R +  +++E   L+  G  E+TLLGQNVN++R +  DGE  TF  LL +++E    VR+R
Sbjct: 190 RDVESILNEVADLVAKGYKEVTLLGQNVNSYRFEKADGEVITFPALLRTVAESAPGVRIR 249

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +TTSHP+DMSD  ++   ++  +  ++HLPVQSGS RILK MNR++T   Y + +D IR 
Sbjct: 250 FTTSHPKDMSDETLQVIAEVPNVCKHIHLPVQSGSSRILKLMNRKYTREWYLERVDAIRR 309

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN-MLEQVD 383
           + PD  +S+D   GF  ET++D R ++ L+++ GY  AF FKYS R GT  S  + + V 
Sbjct: 310 IIPDCGLSTDIFSGFHSETEEDHRLSLSLMEECGYDAAFMFKYSERPGTYASKHLPDDVP 369

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNS 442
           E VK  RL  +           N  CVG+  EVL+E   K    +L GR+   + VV + 
Sbjct: 370 EEVKIRRLNEIIALQNRLSAEANARCVGKTYEVLVEGVSKRSRDQLFGRTEQNRVVVFDR 429

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
             H  GD + V+IT+   +TL GE V
Sbjct: 430 GTHRTGDFVTVKITESSSATLKGEEV 455


>gi|307293142|ref|ZP_07572988.1| RNA modification enzyme, MiaB family [Sphingobium chlorophenolicum
           L-1]
 gi|306881208|gb|EFN12424.1| RNA modification enzyme, MiaB family [Sphingobium chlorophenolicum
           L-1]
          Length = 449

 Score =  462 bits (1190), Expect = e-128,   Method: Composition-based stats.
 Identities = 234/449 (52%), Positives = 309/449 (68%), Gaps = 10/449 (2%)

Query: 19  DQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAE 78
           D    P  F VKS+GCQMNVYD  RM +M  ++G        +ADL++LNTCHIREKA +
Sbjct: 5   DAQKTPTTFHVKSFGCQMNVYDGERMAEMLGTRGMIAAAEGVEADLVILNTCHIREKAVD 64

Query: 79  KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPE 138
           KVYS +GR+        ++G   ++ VAGCVAQAEG EI RR+  V++VVGPQ Y+RLP+
Sbjct: 65  KVYSDIGRM------TREDGSRPMIAVAGCVAQAEGGEIQRRARNVDIVVGPQAYHRLPD 118

Query: 139 LLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
           L+++A  G++ VDTD  +  KF  L     G  ++   TAFLTI EGCDKFCT+CVVPYT
Sbjct: 119 LIDKAGRGEQAVDTDMPLASKFAALP----GRTKQARPTAFLTIMEGCDKFCTYCVVPYT 174

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258
           RG EISR  + ++DEA+ L+D GV EITLLGQNVNAW G+   G       L+  L++I 
Sbjct: 175 RGAEISRGWNAILDEAKALVDGGVREITLLGQNVNAWTGEDDKGRTQGMDGLVRELAKID 234

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
            L R+RYTTSHP DMSD LI AHGD   LMP+LHLPVQSG+DRILK+MNR H+   Y +I
Sbjct: 235 ALKRIRYTTSHPNDMSDGLIAAHGDEPKLMPFLHLPVQSGNDRILKAMNRSHSTDSYLRI 294

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           I+R+R  R D+A+S DFIVGFPGETD +F  T+ +V+++ YAQ +SFKYSPR GTP ++M
Sbjct: 295 IERVRECRGDMALSGDFIVGFPGETDAEFEDTLKIVEQVRYAQCYSFKYSPRPGTPAADM 354

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSV 438
             Q+   V  ERL  LQ  +   QV FN A VG+  ++L+E+ G+  G+L+G++PWLQSV
Sbjct: 355 DHQIPAEVMGERLARLQAVINRHQVEFNAATVGRTTDILLERKGRHPGQLIGKTPWLQSV 414

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGEL 467
            + +   +IGD+I+V I     ++L GE 
Sbjct: 415 HVTAPELSIGDMIEVDIISAGPNSLAGEP 443


>gi|307267463|ref|ZP_07548950.1| RNA modification enzyme, MiaB family [Thermoanaerobacter wiegelii
           Rt8.B1]
 gi|306917520|gb|EFN47807.1| RNA modification enzyme, MiaB family [Thermoanaerobacter wiegelii
           Rt8.B1]
          Length = 471

 Score =  462 bits (1190), Expect = e-128,   Method: Composition-based stats.
 Identities = 181/446 (40%), Positives = 277/446 (62%), Gaps = 15/446 (3%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           + +++YGCQMNV+DS ++  M    GY+   +++ AD+++ NTC +RE A  +V   + +
Sbjct: 33  YHIETYGCQMNVHDSEKLAGMLEKMGYKYTENLEQADVLLFNTCAVREHAEIRVLGRVSQ 92

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           ++ LK        +L++ V+GC+ Q +   E I  +   +++V G    Y+ P+LL  A 
Sbjct: 93  MKELKAR----NPNLIIGVSGCMMQEKNVVEAIKEKYSYIDIVFGTHNIYKFPQLLWEAL 148

Query: 145 FGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             +  V+D     ++  E L +      R   + A++ I  GC+ FCT+C+VPYTRG E 
Sbjct: 149 NSQDIVIDIIEDTKNVIEELPV-----KRDSNLKAWVNIIYGCNNFCTYCIVPYTRGREK 203

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR    ++ E ++L   G  EITLLGQNVN+  GK LD E  TF+ LLY L++I+G+ R+
Sbjct: 204 SRKPEDIIAEVKELAQKGYKEITLLGQNVNS-YGKDLD-EDITFAKLLYKLNDIEGIERI 261

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+ TSHP+D+SD LI A  DLD +  +LHLPVQ+GS++ILK MNR++T   Y +IID++R
Sbjct: 262 RFMTSHPKDISDELIYAIRDLDKVCEHLHLPVQAGSNKILKKMNRKYTKEHYLEIIDKVR 321

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           S  PDIAI++D IVGFPGET++DF  T+DLV+++ +  A++F YS R GT  +NM +QVD
Sbjct: 322 SNIPDIAITTDIIVGFPGETEEDFLETLDLVERVRFDAAYTFIYSKRAGTVAANMPDQVD 381

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVLNS 442
           + +K ERL  L +   +  +  +    G+I+EVLIE   K +  KL  R+   + V    
Sbjct: 382 DAIKHERLERLIELQNKISLEKSAELRGKIVEVLIEGISKRDSNKLTSRTRTNKVVHFVG 441

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
               IG ++ V+IT+ K  T+ GELV
Sbjct: 442 DESLIGKLVNVKITETKAWTMQGELV 467


>gi|294500858|ref|YP_003564558.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus megaterium QM
           B1551]
 gi|294350795|gb|ADE71124.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus megaterium QM
           B1551]
          Length = 520

 Score =  462 bits (1190), Expect = e-128,   Method: Composition-based stats.
 Identities = 177/448 (39%), Positives = 260/448 (58%), Gaps = 15/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++F++++YGCQMN +D+  M  +F   GYE  +S++DA +I+LNTC IRE A  KV+  L
Sbjct: 77  RKFYIRTYGCQMNEHDTEVMAGIFLGLGYEPTDSVEDAHVILLNTCAIRENAENKVFGEL 136

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G ++ LK    +E  +LL+ V GC++Q E    +IL++   V+++ G    +RLP +L  
Sbjct: 137 GHLKALK----RERPELLIGVCGCMSQEESVVNKILQKHQHVDMIFGTHNIHRLPHILNE 192

Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           A   K +V   +S E D  E L        RK  V A++ I  GCDKFCT+C+VPYTRG 
Sbjct: 193 AYLAKEMVIEVWSKEGDVIENLPRA-----RKGSVKAWVNIMYGCDKFCTYCIVPYTRGK 247

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR    ++ E R L   G  EITLLGQNVNA  GK  +       DL+  + +I  + 
Sbjct: 248 ERSRRPEDIIQEVRHLAAQGYKEITLLGQNVNA-YGKDFEDMTYGLGDLMDEIRKID-VA 305

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHPRD  D LI+       L+ ++HLPVQSGS  ILK M R+++   Y +++ +
Sbjct: 306 RIRFTTSHPRDFDDRLIEVLAKGGNLVDHIHLPVQSGSSDILKIMARKYSREHYLELVRK 365

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I+   P  ++++D IVGFP ETD+ F  TM L  ++ +  A++F YSPR GTP + M + 
Sbjct: 366 IKEAIPTASLTTDIIVGFPNETDEQFEETMSLYREVEFDSAYTFIYSPREGTPAAKMQDN 425

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440
           V   VK ERL  L   + E          G+++EVL+E   K   + L G +   + V  
Sbjct: 426 VPMEVKKERLQRLNALVNEISAKKLKEYEGKVVEVLVEGESKNNPEVLAGYTEKSKLVNF 485

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
            +    IG ++KV++T  K  TL GE+V
Sbjct: 486 KAPKSVIGQLVKVKVTKAKTWTLNGEMV 513


>gi|194014848|ref|ZP_03053465.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacillus pumilus ATCC
           7061]
 gi|194013874|gb|EDW23439.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacillus pumilus ATCC
           7061]
          Length = 508

 Score =  462 bits (1190), Expect = e-128,   Method: Composition-based stats.
 Identities = 177/448 (39%), Positives = 263/448 (58%), Gaps = 15/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++F++++YGCQMN +D+  M  +F + GYE  NS +DA++I+LNTC IRE A  KV+  L
Sbjct: 65  RKFYIRTYGCQMNEHDTEVMAGIFMALGYEPTNSTEDANVILLNTCAIRENAENKVFGEL 124

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G ++ LK    +E  DL++ V GC++Q E   + IL++ P V+++ G    +RLPELL  
Sbjct: 125 GHLKALK----REKPDLILGVCGCMSQEESVVKRILKKHPFVDLIFGTHNIHRLPELLSE 180

Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
               K +V   +S E D  E L        R+  +  ++ I  GCDKFCT+C+VPYTRG 
Sbjct: 181 CYLSKEMVIEVWSKEGDVIENLPRA-----RQGKIKGWVNIMYGCDKFCTYCIVPYTRGK 235

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR   +++ E R+L   G  EITLLGQNVNA  GK  +  +     L+  L +I  + 
Sbjct: 236 ERSRRPDEIIQEVRRLAAEGYKEITLLGQNVNA-YGKDFEDMEYGLGHLMDELRKID-IP 293

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHPRD  D LI+       L+ ++HLPVQSGS  +LK M R++    Y  ++ +
Sbjct: 294 RIRFTTSHPRDFDDHLIEVLAKGGNLLDHIHLPVQSGSSSVLKLMARKYDRERYLDLVRK 353

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I+   P+ ++++D IVGFP ETD+ F  T+ L  ++ +  A++F YSPR GTP + M + 
Sbjct: 354 IKEAMPNASLTTDIIVGFPNETDEQFEETLSLYREVEFDAAYTFIYSPREGTPAAKMQDN 413

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440
           V  +VK ERL  L   + E          GQ +EVL+E   K   + L G +   + V  
Sbjct: 414 VPMHVKKERLQRLNALVNEISAKKMKEYEGQTVEVLVEGESKNNPEILAGYTSKSKLVNF 473

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
            +    IG+I+KV+IT  K  +L GE+V
Sbjct: 474 KAPKEAIGNIVKVKITQAKTWSLDGEMV 501


>gi|270159532|ref|ZP_06188188.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Legionella longbeachae
           D-4968]
 gi|269987871|gb|EEZ94126.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Legionella longbeachae
           D-4968]
          Length = 434

 Score =  462 bits (1189), Expect = e-128,   Method: Composition-based stats.
 Identities = 200/437 (45%), Positives = 278/437 (63%), Gaps = 12/437 (2%)

Query: 36  MNVYDSLRMED-MFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSR 94
           MN YDS +M D +  S G  + + ++DAD+I+LNTC IREKA EKV+S LG+ R  K   
Sbjct: 1   MNEYDSSKMADVLLQSHGLVKTDQVEDADVILLNTCSIREKAQEKVFSQLGQWREYKAK- 59

Query: 95  IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-ERARFGKRVVDTD 153
                 +++ V GCVA  EG +I++R+P V++V GPQT +RLPELL ER    K VVD  
Sbjct: 60  ---NPHVVIGVGGCVASQEGADIIKRAPFVDLVFGPQTLHRLPELLNERMEKKKPVVDIS 116

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           +   +KF+ L        R  G TAF++I EGC K+C+FCVVPYTRG EISR    V+ E
Sbjct: 117 FPEIEKFDHLP-----APRAEGPTAFVSIMEGCSKYCSFCVVPYTRGTEISRPFDDVLAE 171

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
             +L   GV EI LLGQNVN +RG   +G+    + L++ L+ I+G+ R+R+TTSHP   
Sbjct: 172 CYQLATQGVREINLLGQNVNDYRGTMENGDIADLALLIHYLAAIEGIDRIRFTTSHPLAF 231

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
           SD LI A+ ++  L  +LHLPVQSGSDRIL  M R +TA E++  I ++R +RPDI +S+
Sbjct: 232 SDNLINAYAEVPELANHLHLPVQSGSDRILGLMKRGYTALEFKSKIRKLRKIRPDIRLST 291

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLC 393
           D IVGFPGETD DF+ TMDLV +IG+  +FSF YSPR GTP +N+ +     VK +RL  
Sbjct: 292 DIIVGFPGETDKDFQDTMDLVHEIGFDTSFSFIYSPRPGTPAANLPDDTPLEVKKQRLQI 351

Query: 394 LQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLVGRSPWLQSVVLNSKNHNIGDIIK 452
           LQ +L  Q   ++ + VG I ++L+  H K+   +L GR+   + V  +   H IG  + 
Sbjct: 352 LQNRLLLQASRYSQSMVGTIQKILVTGHSKKNSQQLSGRTECNRVVNFDGPAHLIGQFVD 411

Query: 453 VRITDVKISTLYGELVV 469
            +I+D   ++L G L+ 
Sbjct: 412 TQISDALPNSLRGRLIA 428


>gi|170759550|ref|YP_001787122.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Clostridium botulinum A3
           str. Loch Maree]
 gi|229890489|sp|B1KSA4|MIAB_CLOBM RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|169406539|gb|ACA54950.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Clostridium botulinum A3
           str. Loch Maree]
          Length = 450

 Score =  462 bits (1189), Expect = e-128,   Method: Composition-based stats.
 Identities = 177/445 (39%), Positives = 263/445 (59%), Gaps = 13/445 (2%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           FF++++GCQMN  DS ++  M   +GY R    ++AD+I+ NTC +RE A  KVY  LG 
Sbjct: 16  FFIETWGCQMNEEDSEKLSGMLKKEGYIRTEERENADVIIFNTCCVRENAELKVYGNLGI 75

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           ++ LK+       +L++ V GC+ Q +G  E I ++ P V++++G    +  P  L   +
Sbjct: 76  LKGLKSK----NPNLIIAVTGCMMQQKGMAETIKKKFPFVDIIIGTHNLHNFPNYLNEVK 131

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
                +      ED       +D    RK  + AF+TI  GC+ FCT+C+VPY RG E S
Sbjct: 132 KKDTSILKIQEKEDSIIENMPID----RKNSMKAFVTIMYGCNNFCTYCIVPYVRGRERS 187

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R+   + DE +KLI  G  EITLLGQNVN+  GK L+  K TF+DLL  ++ I GL R+R
Sbjct: 188 RTPENIEDEIKKLISEGYKEITLLGQNVNS-YGKDLEP-KVTFADLLERVNTIDGLERVR 245

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           + TSHP+D++D +I+A    D L   +HLPVQSGS  ILK MNR +   +Y  ++ +I+ 
Sbjct: 246 FMTSHPKDLTDDVIEAIAKCDKLCEQIHLPVQSGSSEILKKMNRHYDREKYLDVVSKIKK 305

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           + P++A+S+D IVGFPGET+ DF  T+ LV ++ Y  AF+F YS R GTP +   +QV E
Sbjct: 306 LIPNVALSTDIIVGFPGETEKDFEETLSLVKEVEYDSAFTFLYSIRKGTPAAKFEDQVPE 365

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVLNSK 443
           +VK +R   L + + E     N A  G+I EVL+E   K ++ KL+GR+   + V     
Sbjct: 366 DVKHKRFNRLVEVVNEISAKKNKAYEGKIEEVLVEGTSKNDENKLMGRTRTGKLVNFIGD 425

Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468
             +IG ++ V+I      +L GE +
Sbjct: 426 KDSIGKLVNVKIIKANSFSLTGEEI 450


>gi|153941109|ref|YP_001391056.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Clostridium botulinum F
           str. Langeland]
 gi|229890488|sp|A7GE46|MIAB_CLOBL RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|152937005|gb|ABS42503.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Clostridium botulinum F
           str. Langeland]
 gi|295319106|gb|ADF99483.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Clostridium botulinum F
           str. 230613]
          Length = 450

 Score =  462 bits (1189), Expect = e-128,   Method: Composition-based stats.
 Identities = 175/445 (39%), Positives = 262/445 (58%), Gaps = 13/445 (2%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           FF++++GCQMN  DS ++  M   +GY R    ++AD+I+ NTC +RE A  KVY  LG 
Sbjct: 16  FFIETWGCQMNEEDSEKLSGMLKKEGYIRTEERENADVIIFNTCCVRENAELKVYGNLGI 75

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           ++ LK+       +L++ V GC+ Q +G  E I ++ P V++++G    +  P  L   +
Sbjct: 76  LKGLKSK----NPNLIIAVTGCMMQQKGMAETIKKKFPFVDIIIGTHNLHNFPNYLNEVK 131

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
                V      ED       +D    RK  + AF+TI  GC+ FCT+C+VPY RG E S
Sbjct: 132 KKDTSVLKIQEKEDSIIENMPID----RKNSMKAFVTIMYGCNNFCTYCIVPYVRGRERS 187

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R+   +  E +KLI  G  EITLLGQNVN+  GK L+    TF++LL  ++ I+GL R+R
Sbjct: 188 RTPENIEAEIKKLISEGYKEITLLGQNVNS-YGKDLEPN-VTFAELLKRVNNIEGLERVR 245

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           + TSHP+D++D +I+A    D L   +HLPVQSGS  ILK MNR +   +Y  ++ +I+ 
Sbjct: 246 FMTSHPKDLTDDVIEAIAKCDKLCEQIHLPVQSGSSEILKKMNRHYDREKYLDVVSKIKK 305

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           + P++A+S+D IVGFPGET+ DF  T+ LV ++ Y  AF+F YS R GTP +   +QV E
Sbjct: 306 LIPNVALSTDIIVGFPGETEKDFEETLSLVKEVEYDSAFTFLYSIRKGTPAAKFEDQVPE 365

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVLNSK 443
           +VK +R   L + + E     N A  G+I EVL+E   K ++ KL+GR+   + V     
Sbjct: 366 DVKHKRFNRLVEVVNEISAKKNKAYEGKIEEVLVEGTSKNDENKLMGRTRTGKLVNFIGD 425

Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468
             +IG+ + V+I      +L GE +
Sbjct: 426 KDSIGEFVNVKIIKANSFSLTGEEI 450


>gi|229592783|ref|YP_002874902.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Pseudomonas
           fluorescens SBW25]
 gi|229364649|emb|CAY52570.1| conserved hypothetical protein [Pseudomonas fluorescens SBW25]
          Length = 442

 Score =  462 bits (1189), Expect = e-128,   Method: Composition-based stats.
 Identities = 197/450 (43%), Positives = 284/450 (63%), Gaps = 13/450 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++ +++++GCQMN YDS RM D+    Q  E     +DAD+I+LNTC IRE+A ++VY
Sbjct: 1   MAKKLYIETHGCQMNEYDSSRMVDLLGEHQALEVTARAEDADVILLNTCSIRERAQDRVY 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S LGR R LK +      D+++ V GCVA  EG  I  R+P V+VV GPQT +RLPE+++
Sbjct: 61  SQLGRWRELKLA----NPDMVIAVGGCVASQEGAAIRDRAPYVDVVFGPQTLHRLPEMID 116

Query: 142 RARFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
            AR  K   VD  +   +KF+ L        R  G +A++++ EGC K+CTFCVVPYTRG
Sbjct: 117 AARITKLPQVDVSFPEIEKFDHLP-----EPRIDGPSAYVSVMEGCSKYCTFCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR    V+ E   L +NGV E+TLLGQNVN +RG   DG     ++L+  ++ + G+
Sbjct: 172 EEVSRPFDDVLSEIIHLAENGVREVTLLGQNVNGYRGLTQDGRLADLAELIRVVAAVDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+RYTTSHP + SD LI+AH ++  L+ +LHLPVQSGSDRIL +M R HTA EY+  + 
Sbjct: 232 ERIRYTTSHPLEFSDSLIQAHAEVPELVKHLHLPVQSGSDRILSAMKRNHTALEYKSKLR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R+  P I ISSDFIVGFPGET+ DF+ TM L++ +G+  ++SF YS R GTP +++++
Sbjct: 292 KLRAAVPGICISSDFIVGFPGETEKDFQQTMKLIEDVGFDFSYSFVYSQRPGTPAADLVD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVV 439
           +  E +K ERL  LQ +L +Q    +   VG    +L+  +  K+ G+L GR+   + V 
Sbjct: 352 ETPEALKKERLNALQHRLNQQGFEISRQMVGSTQRILVTDYSKKDPGELQGRTENNRIVN 411

Query: 440 LNSKNH-NIGDIIKVRITDVKISTLYGELV 468
               N   IG    V I   +  +L G L+
Sbjct: 412 FRCDNPTLIGQFADVHIDAAQPHSLRGSLL 441


>gi|323703565|ref|ZP_08115210.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Desulfotomaculum
           nigrificans DSM 574]
 gi|323531468|gb|EGB21362.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Desulfotomaculum
           nigrificans DSM 574]
          Length = 459

 Score =  462 bits (1189), Expect = e-128,   Method: Composition-based stats.
 Identities = 177/445 (39%), Positives = 260/445 (58%), Gaps = 14/445 (3%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           + V ++GCQMN  DS  +  M    GY    S ++AD+I+LNTC +RE A  KV+  LGR
Sbjct: 20  YHVITFGCQMNERDSESLAGMLEDMGYLPTESREEADIIILNTCCVRETAESKVFGLLGR 79

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAE--GEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           +R LK +      DL++ VAGC++Q E   ++I    P V+++ G    + LP ++++ R
Sbjct: 80  LRQLKVA----KPDLIIGVAGCMSQQEEVAKKIRHSFPFVDIIFGTHNIHELPRMIQQVR 135

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
             +  V   ++ E        V     RK  + A++TI  GC+ FCT+C+VPY RG E S
Sbjct: 136 ENQEAVLEVWATEKGIAENVPVR----RKDKLKAWVTIMYGCNNFCTYCIVPYVRGRERS 191

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R+   +++E + L+  G  E+TLLGQNVN+  GK L  +   F+DLL  L +I GL R+R
Sbjct: 192 RNPENIIEEIKGLVAQGYKEVTLLGQNVNS-YGKDLQMD-YRFADLLLDLDKITGLKRIR 249

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           + TSHPRD    LI      + +  + HLP Q+GS+RILK MNR +T   Y Q+ID IR 
Sbjct: 250 FMTSHPRDFDQRLIDVIASTNKVCEHFHLPAQAGSNRILKLMNRGYTREHYLQLIDNIRK 309

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             P  +I+SD +VGFPGET++DF  T+DLV ++ Y  AF+F Y+ R GTP + M EQV E
Sbjct: 310 AIPGASITSDIMVGFPGETEEDFADTLDLVRRVRYDSAFTFVYNIRSGTPAAKM-EQVPE 368

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVLNSK 443
            VK+ R+  L     +  +  N    G+++EVL+E   K    KL GRS   + VV +  
Sbjct: 369 EVKSARIQKLIDLQNQISLENNRQEEGKVLEVLVEGETKTNPDKLAGRSRTNKLVVFDGS 428

Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468
               G ++ ++IT  +++ L GELV
Sbjct: 429 PDLTGQLVPIKITKGRLNLLEGELV 453


>gi|237795210|ref|YP_002862762.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Clostridium botulinum Ba4
           str. 657]
 gi|229262035|gb|ACQ53068.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Clostridium botulinum Ba4
           str. 657]
          Length = 450

 Score =  462 bits (1189), Expect = e-128,   Method: Composition-based stats.
 Identities = 176/446 (39%), Positives = 263/446 (58%), Gaps = 13/446 (2%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +FF++++GCQMN  DS ++  M   +GY R    ++AD+I+ NTC +RE A  KVY  LG
Sbjct: 15  KFFIETWGCQMNEEDSEKLSGMLKREGYVRTEERENADVIIFNTCCVRENAELKVYGNLG 74

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERA 143
            ++ LK+       +L++ V GC+ Q +G  E I ++ P V++++G    +     L   
Sbjct: 75  ILKGLKSK----NPNLIIAVTGCMMQQKGMAETIKKKFPFVDIIIGTHNLHNFANYLNEV 130

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           +     V      ED       +D    RK  + AF+TI  GC+ FCT+C+VPY RG E 
Sbjct: 131 KKKDTSVLKIQEKEDIIIENMPID----RKNSMKAFVTIMYGCNNFCTYCIVPYVRGRER 186

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR+   +  E +KLI  G  EITLLGQNVN+  GK L+  K TF++LL  ++ I+GL R+
Sbjct: 187 SRTPENIEAEIKKLISEGYKEITLLGQNVNS-YGKDLEP-KITFAELLKRVNNIEGLERV 244

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+ TSHP+D++D +I+A    D L   +HLPVQSGS  ILK MNR +   +Y  ++ +I+
Sbjct: 245 RFMTSHPKDLTDDVIEAIAKCDKLCEQIHLPVQSGSSEILKKMNRHYDREKYLDVVSKIK 304

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
            + P++A+S+D IVGFPGET+ DF  T+ LV ++ Y  AF+F YS R GTP +   +QV 
Sbjct: 305 KLIPNVALSTDIIVGFPGETEKDFEETLSLVKEVEYDSAFTFLYSIRKGTPAAKFEDQVP 364

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVLNS 442
           E+VK  R   L + + E     N A  G+I EVL+E   K ++ KL+GR+   + V    
Sbjct: 365 EDVKHNRFNRLVEVVNEISAKKNKAYEGKIEEVLVEGTSKNDENKLMGRTRAGKLVNFIG 424

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
              +IG ++ V+IT     +L GE +
Sbjct: 425 NKESIGKLVNVKITKANSFSLTGEEI 450


>gi|110834795|ref|YP_693654.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Alcanivorax
           borkumensis SK2]
 gi|123345402|sp|Q0VN66|MIAB_ALCBS RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|110647906|emb|CAL17382.1| conserved hypothetical protein [Alcanivorax borkumensis SK2]
          Length = 445

 Score =  462 bits (1189), Expect = e-128,   Method: Composition-based stats.
 Identities = 192/447 (42%), Positives = 283/447 (63%), Gaps = 13/447 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++ F++++GCQMN YDS RM D+  S  G E  ++ ++AD+++LNTC IREKA EKV+
Sbjct: 1   MARKLFIQTHGCQMNEYDSTRMVDLLESSHGLEPTDNPEEADVLLLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR + LK++      D+++ V GCVA  EG+ I  R+P V+VV GPQT +RLP L+ 
Sbjct: 61  HQLGRWKKLKDA----KPDMIIGVGGCVASQEGDAIRDRAPYVDVVFGPQTLHRLPGLIT 116

Query: 142 RARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           +A   +   +D  +   +KF+ L           G +AF++I EGC K+CTFCVVPYTRG
Sbjct: 117 QAASTRELAIDVTFPEIEKFDNLP-----EPSVDGPSAFVSIMEGCSKYCTFCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR +  V+ E + L D GV E+ LLGQNVNA++G G DG+    +DL+  + +I G+
Sbjct: 172 EEVSRPVQPVLKEIQHLADMGVREVNLLGQNVNAYQGVGADGDTLDLADLIRLIRDIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+RYTTSHP + S+ LI+ + D+  L+ +LHLPVQSGSDRIL  M R H   EY+  + 
Sbjct: 232 DRIRYTTSHPVEFSEALIQVYEDVPELVSHLHLPVQSGSDRILAMMKRNHMVLEYKSKLR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           +++ +RPDI+ SSDFI+GFPGETD DF  TM+L+  IG+  +FSF YS R GTP +++ +
Sbjct: 292 KLKRIRPDISFSSDFIIGFPGETDRDFEDTMNLIHDIGFDMSFSFIYSARPGTPAADLPD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVV 439
            VD  VK +RL  LQ+++ +     +   VG    +L++    K+ G+L GR+   + V 
Sbjct: 352 DVDMEVKKQRLAILQQRINQNVQDISRKMVGSTQRILVDGFSKKDPGQLKGRTENNRVVN 411

Query: 440 LNSKN-HNIGDIIKVRITDVKISTLYG 465
               +   IG  + V I     ++L G
Sbjct: 412 FQCDDTDLIGKFVDVTIAKAYSNSLLG 438


>gi|157692385|ref|YP_001486847.1| tRNA 2-methylthioadenine synthetase [Bacillus pumilus SAFR-032]
 gi|229890424|sp|A8FDH0|MIAB_BACP2 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|157681143|gb|ABV62287.1| tRNA 2-methylthioadenine synthetase [Bacillus pumilus SAFR-032]
          Length = 508

 Score =  462 bits (1189), Expect = e-128,   Method: Composition-based stats.
 Identities = 177/448 (39%), Positives = 262/448 (58%), Gaps = 15/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++F++++YGCQMN +D+  M  +F + GYE  NS +DA++I+LNTC IRE A  KV+  L
Sbjct: 65  RKFYIRTYGCQMNEHDTEVMAGIFMALGYEPTNSTEDANVILLNTCAIRENAENKVFGEL 124

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G ++ LK    +E  DL++ V GC++Q E     IL++ P V+++ G    +RLPELL  
Sbjct: 125 GHLKALK----REKPDLILGVCGCMSQEESVVNRILKKHPFVDLIFGTHNIHRLPELLSE 180

Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
               K +V   +S E D  E L        R+  +  ++ I  GCDKFCT+C+VPYTRG 
Sbjct: 181 CYLSKEMVIEVWSKEGDVIENLPRA-----RQGKIKGWVNIMYGCDKFCTYCIVPYTRGK 235

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR   +++ E R+L   G  EITLLGQNVNA  GK  +  +     L+  L +I  + 
Sbjct: 236 ERSRRPDEIIQEVRRLAAEGYKEITLLGQNVNA-YGKDFEDMEYGLGHLMDELRKID-IP 293

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHPRD  D LI+       L+ ++HLPVQSGS  +LK M R++    Y  ++ +
Sbjct: 294 RIRFTTSHPRDFDDHLIEVLAKGGNLLDHIHLPVQSGSSSVLKLMARKYDRERYLDLVRK 353

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I+   P+ ++++D IVGFP ETD+ F  T+ L  ++ +  A++F YSPR GTP + M + 
Sbjct: 354 IKEAMPNASLTTDIIVGFPNETDEQFEETLSLYREVEFDAAYTFIYSPREGTPAAKMQDN 413

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440
           V  +VK ERL  L   + E          GQ +EVL+E   K   + L G +   + V  
Sbjct: 414 VPMHVKKERLQRLNALVNEISAKKMKEYEGQTVEVLVEGESKNNPEILAGYTSKSKLVNF 473

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
            +    IG+I+KV+IT  K  +L GE+V
Sbjct: 474 KAPKEAIGNIVKVKITQAKTWSLDGEMV 501


>gi|71276464|ref|ZP_00652740.1| Protein of unknown function UPF0004:tRNA-i(6)A37 modification
           enzyme MiaB [Xylella fastidiosa Dixon]
 gi|170731017|ref|YP_001776450.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Xylella
           fastidiosa M12]
 gi|229891034|sp|B0U4P1|MIAB_XYLFM RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|71162780|gb|EAO12506.1| Protein of unknown function UPF0004:tRNA-i(6)A37 modification
           enzyme MiaB [Xylella fastidiosa Dixon]
 gi|167965810|gb|ACA12820.1| bifunctional enzyme involved in thiolation and methylation of tRNA
           [Xylella fastidiosa M12]
          Length = 497

 Score =  462 bits (1189), Expect = e-128,   Method: Composition-based stats.
 Identities = 196/470 (41%), Positives = 288/470 (61%), Gaps = 22/470 (4%)

Query: 11  AHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNT 69
           AH      D+     + F+K++GCQMN YDS +M D+  + +  E  ++ ++AD+I++NT
Sbjct: 34  AHPGDPSHDRPPSRGKLFIKTHGCQMNEYDSAKMADVLTTTEALELTDNPEEADIILINT 93

Query: 70  CHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG 129
           C IREKA EKV+S LGR R LK +    G D+++ V GCVA  EGE I++R+P V++V G
Sbjct: 94  CSIREKAQEKVFSQLGRWRALKTN----GRDVIIGVGGCVASQEGETIVKRAPYVDLVFG 149

Query: 130 PQTYYRLPELL-ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
           PQT +RLP+++  R    +  +D  +   +KF+ L        R  G +AF++I EGC K
Sbjct: 150 PQTLHRLPDMIRARREQNRPQIDISFPEIEKFDHLPT-----PRAEGPSAFVSIMEGCSK 204

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK---- 244
           +C+FCVVPYTRG E+SR    V+ E   L   GV EI LLGQNVNA+RG    G      
Sbjct: 205 YCSFCVVPYTRGEEVSRPFEDVLTEIAHLATQGVREINLLGQNVNAYRGAMDPGPSNNTN 264

Query: 245 ------CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
                      L+ ++++ + + R+R+TTSHP + SD L++A+ D+  L  +LHLPVQSG
Sbjct: 265 PAAPPYADLGLLIRAIAQFESIGRIRFTTSHPLEFSDSLVEAYRDIPQLANHLHLPVQSG 324

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           SDRIL +M R +TA E++  I ++R+VRPDI+ISSDFI+GFPGE+D DF+ TM L++ IG
Sbjct: 325 SDRILSAMKRGYTALEFKSKIRKLRAVRPDISISSDFIIGFPGESDTDFQKTMQLIEDIG 384

Query: 359 YAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI 418
           + Q+FSF YS R GTP SN+ +   + +K  RL  LQK +       +   +G +  VL+
Sbjct: 385 FDQSFSFIYSRRPGTPASNLEDHTPDEIKRTRLEHLQKHINAYAADISKRMIGTVQTVLV 444

Query: 419 EKHGKEK-GKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
           E   K+   +L G++  ++ V        IG  I V IT+   ++L G +
Sbjct: 445 EGPSKKNPNELTGKTENMRPVNFPGNPRLIGQFIDVHITEALTNSLRGRV 494


>gi|330994671|ref|ZP_08318594.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Gluconacetobacter sp. SXCC-1]
 gi|329758312|gb|EGG74833.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Gluconacetobacter sp. SXCC-1]
          Length = 468

 Score =  462 bits (1188), Expect = e-128,   Method: Composition-based stats.
 Identities = 245/455 (53%), Positives = 313/455 (68%), Gaps = 4/455 (0%)

Query: 14  VSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIR 73
           V+Q   + +  +   V ++GCQMNVYDS RM D+    GY  V + DDAD+I+LNTCHIR
Sbjct: 10  VAQPHTRTVSTRGLHVITWGCQMNVYDSERMTDVLRPLGYRAVGTPDDADMIILNTCHIR 69

Query: 74  EKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTY 133
           ++AAEKV+S LGR+R +K +R + G   ++ VAGCVAQAEG EIL R+P V++V+GPQTY
Sbjct: 70  DRAAEKVFSELGRLRKVKEARAERGAGTVLAVAGCVAQAEGHEILARAPYVDIVLGPQTY 129

Query: 134 YRLPELLERARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTF 192
           +RLPE++ RA      V++TD+ +E KF+ L           G  AFLTIQEGCDKFC+F
Sbjct: 130 HRLPEMVARAARAAGAVIETDFPIEQKFDFLPADRAAPA---GGAAFLTIQEGCDKFCSF 186

Query: 193 CVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLY 252
           CVVPYTRG E SR    V+ EAR+L+  G  EITLLGQNVNA+ G+G DG     + L  
Sbjct: 187 CVVPYTRGAESSRPAVAVLAEARRLVAAGAREITLLGQNVNAYHGEGPDGATWGLARLAR 246

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
            L++  G+ R+RYTTSHPRDM D LI AH DL  LMP+LHLPVQSGSDR+L +MNR HTA
Sbjct: 247 VLADEVGVARIRYTTSHPRDMEDDLIAAHRDLPQLMPFLHLPVQSGSDRVLAAMNRGHTA 306

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
            EYR ++DR+R+ RPD+A+SSDFIVG PGETD DF  TM L+  IG+AQA+SFKYSPR G
Sbjct: 307 DEYRVLVDRLRTARPDLALSSDFIVGHPGETDGDFADTMRLIRDIGFAQAYSFKYSPRPG 366

Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS 432
           TP +   +QV E+ K  RL  LQ  LR QQ  FNDA +G+   VL    G++ G++ G+S
Sbjct: 367 TPAAGAGQQVAESTKDARLQELQALLRVQQDEFNDATIGRSTPVLFTGRGRKPGQISGKS 426

Query: 433 PWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
           PWLQ+V +      IG I  V I     ++L G L
Sbjct: 427 PWLQAVNVEGPESLIGRIASVDIRHRYTNSLGGVL 461


>gi|295706204|ref|YP_003599279.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus megaterium DSM
           319]
 gi|294803863|gb|ADF40929.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus megaterium DSM
           319]
          Length = 509

 Score =  462 bits (1188), Expect = e-128,   Method: Composition-based stats.
 Identities = 177/448 (39%), Positives = 260/448 (58%), Gaps = 15/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++F++++YGCQMN +D+  M  +F   GYE  +S++DA +I+LNTC IRE A  KV+  L
Sbjct: 66  RKFYIRTYGCQMNEHDTEVMAGIFLGLGYEPTDSVEDAHVILLNTCAIRENAENKVFGEL 125

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G ++ LK    +E  +LL+ V GC++Q E    +IL++   V+++ G    +RLP +L  
Sbjct: 126 GHLKALK----RERPELLIGVCGCMSQEESVVNKILQKHQHVDMIFGTHNIHRLPHILNE 181

Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           A   K +V   +S E D  E L        RK  V A++ I  GCDKFCT+C+VPYTRG 
Sbjct: 182 AYLAKEMVIEVWSKEGDVIENLPRA-----RKGSVKAWVNIMYGCDKFCTYCIVPYTRGK 236

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR    ++ E R L   G  EITLLGQNVNA  GK  +       DL+  + +I  + 
Sbjct: 237 ERSRRPEDIIQEVRHLAAQGYKEITLLGQNVNA-YGKDFEDITYGLGDLMDEIRKID-VA 294

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHPRD  D LI+       L+ ++HLPVQSGS  ILK M R+++   Y +++ +
Sbjct: 295 RIRFTTSHPRDFDDRLIEVLAKGGNLVDHIHLPVQSGSSDILKIMARKYSREHYLELVRK 354

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I+   P  ++++D IVGFP ETD+ F  TM L  ++ +  A++F YSPR GTP + M + 
Sbjct: 355 IKEAIPTASLTTDIIVGFPNETDEQFEETMSLYREVEFDSAYTFIYSPREGTPAAKMQDN 414

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440
           V   VK ERL  L   + E          G+++EVL+E   K   + L G +   + V  
Sbjct: 415 VPMEVKKERLQRLNALVNEISAKKLKEYEGKVVEVLVEGESKNNPEVLAGYTEKSKLVNF 474

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
            +    IG ++KV++T  K  TL GE+V
Sbjct: 475 KAPKSVIGQLVKVKVTKAKTWTLNGEMV 502


>gi|261407895|ref|YP_003244136.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Paenibacillus
           sp. Y412MC10]
 gi|261284358|gb|ACX66329.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Paenibacillus sp.
           Y412MC10]
          Length = 519

 Score =  462 bits (1188), Expect = e-128,   Method: Composition-based stats.
 Identities = 176/449 (39%), Positives = 260/449 (57%), Gaps = 14/449 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
             + + V +YGCQMN +DS  ++ +    GY        AD+I+LNTC IRE A +KV+ 
Sbjct: 72  AGKHYIVYTYGCQMNEHDSETIKGLLEQMGYRATEDRKQADIILLNTCAIRENAEDKVFG 131

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELL 140
            LG +++LK        D+L+ V GC++Q E     IL++   V+++ G    +RLP L+
Sbjct: 132 ELGHLKHLKTE----KPDMLLGVCGCMSQEESVVNRILQKHGFVDLIFGTHNVHRLPHLI 187

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           + A F K +V   +S E       IV+    ++ G+  ++ I  GCDKFCT+C+VPYTRG
Sbjct: 188 QEALFSKEMVVEVWSKEG-----DIVENLPKKREGLRGWVNIMYGCDKFCTYCIVPYTRG 242

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E SR    V+ E R+L   G  EITLLGQNVNA  GK  +  +  F DL+  + +I  +
Sbjct: 243 KERSRRPEDVIAEVRELARQGYKEITLLGQNVNA-YGKDFEDIQYRFGDLMDDIHKID-I 300

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+TTSHPRD  D LI+       L+ ++HLPVQSGS ++LK M+R++T   Y ++  
Sbjct: 301 PRVRFTTSHPRDFDDHLIEVLAKGGNLVEHIHLPVQSGSSQVLKKMSRKYTRETYLELAH 360

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           +I+   P++A ++D IVGFPGETD+ F  T+ LV ++GY  A++F YSPR GTP + M +
Sbjct: 361 KIKKAIPNVAFTTDIIVGFPGETDEQFEETLSLVREVGYDSAYTFIYSPREGTPAAVMED 420

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLVGRSPWLQSVV 439
            V   VK+ERL  L   + E     ND  +G  +EVL+E   K     L GR+   + V 
Sbjct: 421 NVPMEVKSERLQRLNAAINEYSRKSNDRLLGSTVEVLVEGVSKNNDSMLSGRTRTNKLVH 480

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  +G  + VRITD K   + G+++
Sbjct: 481 FEGSTELVGSFVNVRITDTKTWYIKGDMI 509


>gi|154686118|ref|YP_001421279.1| YmcB [Bacillus amyloliquefaciens FZB42]
 gi|229890448|sp|A7Z4X2|MIAB_BACA2 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|154351969|gb|ABS74048.1| YmcB [Bacillus amyloliquefaciens FZB42]
          Length = 509

 Score =  462 bits (1188), Expect = e-128,   Method: Composition-based stats.
 Identities = 176/445 (39%), Positives = 258/445 (57%), Gaps = 15/445 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++F++++YGCQMN +D+  M  +F + GYE  NS+DDA++I+LNTC IRE A  KV+  L
Sbjct: 66  RKFYIRTYGCQMNEHDTEVMAGIFMALGYEATNSVDDANVILLNTCAIRENAENKVFGEL 125

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G ++ LK    K   DL++ V GC++Q E     IL++ P V+++ G    +RLPELL  
Sbjct: 126 GHLKALK----KNNPDLILGVCGCMSQEESVVNRILKKHPFVDMIFGTHNIHRLPELLSE 181

Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           A   K +V   +S E D  E L  V  G      +  ++ I  GCDKFCT+C+VPYTRG 
Sbjct: 182 AYLSKEMVIEVWSKEGDVIENLPKVRNGK-----IKGWVNIMYGCDKFCTYCIVPYTRGK 236

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR   +++ E R+L   G  EITLLGQNVNA  GK  +       DL+  L +I  + 
Sbjct: 237 ERSRRPEEIIQEVRRLASEGYKEITLLGQNVNA-YGKDFEDMTYGLGDLMDELRKID-IP 294

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHPRD  D LI+       L+ ++HLPVQSGS  +LK M R++    Y +++ +
Sbjct: 295 RIRFTTSHPRDFDDHLIEVLAKGGNLLDHIHLPVQSGSSAMLKMMARKYDRERYLELVGK 354

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I++  P+ ++++D IVGFP ETD+ F  T+ L  ++ +  A++F YSPR GTP + M + 
Sbjct: 355 IKAAMPNASLTTDIIVGFPNETDEQFEETLSLYREVEFDSAYTFIYSPREGTPAAKMKDN 414

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVL 440
           V   VK ERL  L   ++E          G+ +EVL+E   K     L G +   + V  
Sbjct: 415 VPMRVKKERLQRLNDLVKEISAKKMKEYEGRTVEVLVEGESKNNPDILAGYTEKSKLVNF 474

Query: 441 NSKNHNIGDIIKVRITDVKISTLYG 465
                 IG I++V+I   K  +L G
Sbjct: 475 KGPKDAIGKIVRVKIEQAKTWSLDG 499


>gi|237747925|ref|ZP_04578405.1| tRNA modifying enzyme [Oxalobacter formigenes OXCC13]
 gi|229379287|gb|EEO29378.1| tRNA modifying enzyme [Oxalobacter formigenes OXCC13]
          Length = 461

 Score =  462 bits (1188), Expect = e-128,   Method: Composition-based stats.
 Identities = 196/449 (43%), Positives = 285/449 (63%), Gaps = 14/449 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++ F+K++GCQMN YDS +M D+   + GY R +  ++ADLI+LNTC +REKA EKV+
Sbjct: 14  MQKKVFIKTFGCQMNEYDSGKMADLLEVTDGYIRTDKAEEADLILLNTCSVREKAQEKVF 73

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S LGR      +  ++  DL++ V+GCVA  EGE I++R+P VN+V GPQT +RLP+++ 
Sbjct: 74  SDLGRFNK---TLRRKNPDLIIGVSGCVASQEGEAIVKRAPYVNIVFGPQTLHRLPDMIH 130

Query: 142 RARF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
                G   +DT +   +KF+ L        R    TA+++I EGC KFC++C+VPYTRG
Sbjct: 131 EYEKTGDAQIDTSFPEIEKFDHLPPA-----RVEMPTAYVSIMEGCSKFCSYCIVPYTRG 185

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR L  V+ E   L + GV EITLLGQNVNA+RG    GE   F+ L+ ++++I G+
Sbjct: 186 AEVSRPLEDVLVEIIGLAEQGVKEITLLGQNVNAYRGAMAGGEIADFALLIETVADIPGI 245

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+ TSHP++ +  LI  +  +  L+ +L+LP Q GSDRIL +M R +T  EY+ II 
Sbjct: 246 ERIRFVTSHPKEFTQRLIDVYERVPQLVSHLYLPAQHGSDRILAAMKRGYTVLEYKSIIR 305

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           R++++RPD+ +SSDFIVGFPGETD DF A M L+D I +  +FSF YSPR GTP + +  
Sbjct: 306 RLKAIRPDLLVSSDFIVGFPGETDADFDAMMKLIDDIDFDNSFSFLYSPRPGTPAAALPI 365

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVV 439
            +  +V+ +RL  LQ ++ EQ    N A VG+   VLIE    +  G++ GR+   + V 
Sbjct: 366 DIPLDVRKDRLQRLQTRIEEQTRQHNMAMVGKTERVLIEGLSQRNPGQIQGRTENNRVVH 425

Query: 440 LNSKNHN---IGDIIKVRITDVKISTLYG 465
           +   +     IG II V IT+     L G
Sbjct: 426 IPGGDDPKQWIGKIIDVDITETLNFALRG 454


>gi|167040247|ref|YP_001663232.1| (dimethylallyl)adenosine tRNA methylthiotransferase
           [Thermoanaerobacter sp. X514]
 gi|256750831|ref|ZP_05491716.1| RNA modification enzyme, MiaB family [Thermoanaerobacter
           ethanolicus CCSD1]
 gi|300914331|ref|ZP_07131647.1| RNA modification enzyme, MiaB family [Thermoanaerobacter sp. X561]
 gi|307724433|ref|YP_003904184.1| RNA modification enzyme, MiaB family [Thermoanaerobacter sp. X513]
 gi|229891016|sp|B0K1A1|MIAB_THEPX RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|166854487|gb|ABY92896.1| RNA modification enzyme, MiaB family [Thermoanaerobacter sp. X514]
 gi|256750414|gb|EEU63433.1| RNA modification enzyme, MiaB family [Thermoanaerobacter
           ethanolicus CCSD1]
 gi|300889266|gb|EFK84412.1| RNA modification enzyme, MiaB family [Thermoanaerobacter sp. X561]
 gi|307581494|gb|ADN54893.1| RNA modification enzyme, MiaB family [Thermoanaerobacter sp. X513]
          Length = 471

 Score =  462 bits (1188), Expect = e-128,   Method: Composition-based stats.
 Identities = 182/446 (40%), Positives = 276/446 (61%), Gaps = 15/446 (3%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           + +++YGCQMNV+DS ++  M    GY+   +++ AD+++ NTC +RE A  +V   + +
Sbjct: 33  YHIETYGCQMNVHDSEKLAGMLEKMGYKYTENLEQADVLLFNTCAVREHAEIRVLGRVSQ 92

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           ++ LK        +L++ V+GC+ Q +   E I  +   +++V G    Y+ P+LL  A 
Sbjct: 93  MKELKAR----NPNLIIGVSGCMMQEKNVVEAIKEKYSYIDIVFGTHNIYKFPQLLWEAL 148

Query: 145 FGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             +  V+D     ++  E L +      R   + A++ I  GC+ FCT+C+VPYTRG E 
Sbjct: 149 NSQDIVIDIIEDTKNVIEELPV-----KRDSNLKAWVNIIYGCNNFCTYCIVPYTRGREK 203

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR    ++ E ++L   G  EITLLGQNVN+  GK LD E  TF+ LLY L++I+G+ R+
Sbjct: 204 SRKPEDIIAEVKELAQKGYKEITLLGQNVNS-YGKDLD-EDITFAKLLYKLNDIEGIERI 261

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+ TSHP+D+SD LI A  DLD +  +LHLPVQ+GS++ILK MNR++T   Y +IID++R
Sbjct: 262 RFMTSHPKDISDELIYAMRDLDKVCEHLHLPVQAGSNKILKKMNRKYTKEHYLEIIDKVR 321

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           S  PDIAI++D IVGFPGET++DF  T+DLV+++ +  A++F YS R GT  +NM +QVD
Sbjct: 322 SNIPDIAITTDIIVGFPGETEEDFLETLDLVERVRFDAAYTFIYSKRAGTVAANMPDQVD 381

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVLNS 442
           + VK ERL  L +   +  +  +    G+I+EVLIE   K +  KL  R+   + V    
Sbjct: 382 DAVKHERLERLIELQNKISLEKSAELRGKIVEVLIEGISKRDSNKLTSRTRTNKVVHFVG 441

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
               IG +  V+IT+ K  T+ GELV
Sbjct: 442 DESLIGKLANVKITETKAWTMQGELV 467


>gi|163734559|ref|ZP_02141998.1| tRNA-i(6)A37 thiotransferase enzyme MiaB, putative [Roseobacter
           litoralis Och 149]
 gi|161392052|gb|EDQ16382.1| tRNA-i(6)A37 thiotransferase enzyme MiaB, putative [Roseobacter
           litoralis Och 149]
          Length = 426

 Score =  462 bits (1188), Expect = e-128,   Method: Composition-based stats.
 Identities = 236/428 (55%), Positives = 311/428 (72%), Gaps = 8/428 (1%)

Query: 36  MNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRI 95
           MNVYDS RM +   ++GY    + +DAD+I+LNTCHIREKAAEKVYS LGR+++LK    
Sbjct: 1   MNVYDSERMSEALVAEGYVETKTAEDADMILLNTCHIREKAAEKVYSELGRLKSLKA--- 57

Query: 96  KEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYS 155
            +  DL + VAGCVAQAEGEEI+RR P V++VVGPQ+Y+RLP++  R R G + +DTD+ 
Sbjct: 58  -DNPDLKIGVAGCVAQAEGEEIMRRQPAVDLVVGPQSYHRLPQMEARLREGHKALDTDFP 116

Query: 156 VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEAR 215
            EDKFE L         +R  +AFLT+QEGCDKFC FCVVPYTRG E+SR +++V+DEAR
Sbjct: 117 PEDKFEELKARP---KARRAPSAFLTVQEGCDKFCAFCVVPYTRGAEVSRPVTRVLDEAR 173

Query: 216 KLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSD 275
            L++ GV EITLLGQNVNA+ G G DG + T + L+++L++I GL R+R+TTSHP DM D
Sbjct: 174 DLVERGVREITLLGQNVNAYHGAGADGNEQTLAQLIWALNDIDGLERIRFTTSHPNDMRD 233

Query: 276 CLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDF 335
            LI+AH D   LMPYLHLPVQSGSD+ILK MNR HTA  Y ++I+RIR+ RPDI +S DF
Sbjct: 234 DLIEAHRDCPKLMPYLHLPVQSGSDKILKRMNRSHTADSYLRLIERIRAGRPDILLSGDF 293

Query: 336 IVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQ 395
           IVGFP ET+ DF+AT+DL++ + Y  A+SFKYS R GTP +    QVD +   ERL  +Q
Sbjct: 294 IVGFPEETEADFQATLDLIEAVNYGYAYSFKYSTRPGTPAAERA-QVDPDEADERLQRIQ 352

Query: 396 KKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRI 455
             +  QQ     + VG+ + VLIEK G+  G++VG+S +L +V ++  N  IGDI+ VRI
Sbjct: 353 ALITRQQQDIQQSMVGRDVSVLIEKPGRFDGQMVGKSEYLHAVHVDQCNARIGDILPVRI 412

Query: 456 TDVKISTL 463
            + K ++L
Sbjct: 413 VEAKRNSL 420


>gi|322806038|emb|CBZ03605.1| tRNA-i(6)A37 methylthiotransferase [Clostridium botulinum H04402
           065]
          Length = 450

 Score =  462 bits (1188), Expect = e-128,   Method: Composition-based stats.
 Identities = 176/445 (39%), Positives = 263/445 (59%), Gaps = 13/445 (2%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           FF++++GCQMN  DS ++  M   +GY R    +DAD+I+ NTC +RE A  KVY  LG 
Sbjct: 16  FFIETWGCQMNEEDSEKLSGMLKKEGYIRTEEREDADVIIFNTCCVRENAELKVYGNLGI 75

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           ++ LK+       +L++ V GC+ Q +G  E I ++ P V++++G    +  P  L   +
Sbjct: 76  LKGLKSK----NPNLIIAVTGCMMQQKGMAETIKKKFPFVDIIIGTHNLHNFPNYLNEVK 131

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
                V      E+       +D    RK  + AF+TI  GC+ FCT+C+VPY RG E S
Sbjct: 132 KKDTSVLKIQEKENSIIENMPID----RKNSMKAFVTIMYGCNNFCTYCIVPYVRGRERS 187

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R+   +  E +KLI  G  EITLLGQNVN+  GK L+    TF++LL  ++ I+GL R+R
Sbjct: 188 RTPENIEAEIKKLISEGYKEITLLGQNVNS-YGKDLEPN-VTFAELLKRVNNIEGLERVR 245

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           + TSHP+D++D +I+A    D L   +HLPVQSGS  ILK MNR +   +Y  ++ +I+ 
Sbjct: 246 FMTSHPKDLTDDVIEAIAKCDKLCEQIHLPVQSGSSEILKKMNRHYDREKYLDVVSKIKK 305

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           + P++A+S+D IVGFPGET+ DF  T+ LV ++ Y  AF+F YS R GTP +   +QV E
Sbjct: 306 LIPNVALSTDIIVGFPGETEKDFEETLSLVKEVEYDSAFTFLYSIRKGTPAAKFEDQVPE 365

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVLNSK 443
           +VK +R   L + L E     N A  G+I EVL+E   K ++ KL+GR+   + V     
Sbjct: 366 DVKHKRFNRLVEVLNEISAKKNKAYEGKIEEVLVEGTSKNDENKLMGRTRTGKLVNFIGD 425

Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468
             +IG+++ V+I      +L GE +
Sbjct: 426 KDSIGELVNVKIIKANSFSLTGEEI 450


>gi|304395674|ref|ZP_07377557.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Pantoea sp. aB]
 gi|304356968|gb|EFM21332.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Pantoea sp. aB]
          Length = 461

 Score =  462 bits (1188), Expect = e-128,   Method: Composition-based stats.
 Identities = 198/436 (45%), Positives = 277/436 (63%), Gaps = 12/436 (2%)

Query: 36  MNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSR 94
           MN YDS +M D+   + GY      ++AD+++LNTC IREKA EKV+  LGR R LK   
Sbjct: 1   MNEYDSSKMSDLLNTTHGYTLTEVPEEADILLLNTCSIREKAQEKVFHLLGRWRKLKER- 59

Query: 95  IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR-VVDTD 153
                D+++ V GCVA  EG+ I +R+P V++V GPQT +RLPE++   R  K  VVD  
Sbjct: 60  ---NPDVIIGVGGCVASQEGDHIRQRAPCVDIVFGPQTLHRLPEMINTVRGTKSPVVDIS 116

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           +   +KF+RL        R  G TAF++I EGC+K+CTFCVVPYTRG E+SR    ++ E
Sbjct: 117 FPEIEKFDRLP-----DPRAEGPTAFVSIMEGCNKYCTFCVVPYTRGEEVSRPSDDILLE 171

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
             +L   GV E+ LLGQNVNA+RG   DGE CTF++LL  ++ I G+ R+R+TTSHP + 
Sbjct: 172 IAQLAAQGVREVNLLGQNVNAYRGATFDGEICTFAELLRLVAAIDGIDRIRFTTSHPIEF 231

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
           +D +I+ + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II ++R+ RPDI ISS
Sbjct: 232 TDDIIEVYRDTPELVSFLHLPVQSGSDRILTLMKRAHTALEYKAIIRKLRAARPDIEISS 291

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLC 393
           DFI+GFPGET  DF  TM L+ +I +  +FSF YS R GTP +++ + V E  K +RL  
Sbjct: 292 DFIIGFPGETQQDFEQTMKLIAEINFDVSFSFVYSARPGTPAADLPDDVSEEEKKQRLWI 351

Query: 394 LQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNSKNHNIGDIIK 452
           LQ ++ +Q  + +   VG +  +L+E   ++   ++ GR+   + V        IG  + 
Sbjct: 352 LQDRINQQAQAISRRMVGTVQRILVEGISRKNVMEVSGRTENNRVVNFEGSPEMIGRFVD 411

Query: 453 VRITDVKISTLYGELV 468
           V I DV  ++L G+LV
Sbjct: 412 VEIVDVYTNSLRGKLV 427


>gi|168184857|ref|ZP_02619521.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Clostridium botulinum Bf]
 gi|182672056|gb|EDT84017.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Clostridium botulinum Bf]
          Length = 450

 Score =  462 bits (1188), Expect = e-128,   Method: Composition-based stats.
 Identities = 176/446 (39%), Positives = 262/446 (58%), Gaps = 13/446 (2%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +FF++++GCQMN  DS ++  M   +GY R    ++AD+I+ NTC +RE A  KVY  LG
Sbjct: 15  KFFIETWGCQMNEEDSEKLSGMLKREGYVRTEERENADVIIFNTCCVRENAELKVYGNLG 74

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERA 143
            ++ LK        +L++ V GC+ Q +G  E I ++ P V++++G    +     L   
Sbjct: 75  ILKGLKYK----NPNLIIAVTGCMMQQKGMAETIKKKFPFVDIIIGTHNLHNFANYLNEV 130

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           +     V      ED       +D    RK  + AF+TI  GC+ FCT+C+VPY RG E 
Sbjct: 131 KKKDTSVLKIQEKEDIIIENMPID----RKNSMKAFVTIMYGCNNFCTYCIVPYVRGRER 186

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR+   +  E +KLI  G  EITLLGQNVN+  GK L+  K TF++LL  ++ I+GL R+
Sbjct: 187 SRTPENIEAEIKKLISEGYKEITLLGQNVNS-YGKDLEP-KITFAELLKRVNNIEGLERV 244

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+ TSHP+D++D +I+A    D L   +HLPVQSGS  ILK MNR +   +Y  ++ +I+
Sbjct: 245 RFMTSHPKDLTDDVIEAIAKCDKLCEQIHLPVQSGSSEILKKMNRHYDREKYLDVVSKIK 304

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
            + P++A+S+D IVGFPGET+ DF  T+ LV ++ Y  AF+F YS R GTP +   +QV 
Sbjct: 305 KLIPNVALSTDIIVGFPGETEKDFEETLSLVKEVEYDSAFTFLYSIRKGTPAAKFEDQVP 364

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVLNS 442
           E+VK  R   L + + E     N A  G+I EVL+E   K ++ KL+GR+   + V    
Sbjct: 365 EDVKHNRFNRLVEVVNEISAKKNKAYEGKIEEVLVEGTSKNDENKLMGRTRAGKLVNFIG 424

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
              +IG ++ V+IT     +L GE +
Sbjct: 425 NKESIGKLVNVKITKANSFSLTGEEI 450


>gi|170755938|ref|YP_001781349.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Clostridium botulinum B1
           str. Okra]
 gi|229890487|sp|B1IM69|MIAB_CLOBK RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|169121150|gb|ACA44986.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Clostridium botulinum B1
           str. Okra]
          Length = 450

 Score =  462 bits (1188), Expect = e-128,   Method: Composition-based stats.
 Identities = 177/445 (39%), Positives = 263/445 (59%), Gaps = 13/445 (2%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           FF++++GCQMN  DS ++  M   +GY R    ++AD+I+ NTC +RE A  KVY  LG 
Sbjct: 16  FFIETWGCQMNEEDSEKLSGMLKKEGYIRTEERENADVIIFNTCCVRENAELKVYGNLGI 75

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           ++ LK+       +L++ V GC+ Q +G  E I ++ P V++++G    +  P  L   +
Sbjct: 76  LKGLKSK----NPNLIIAVTGCMMQQKGMAETIKKKFPFVDIIIGTHNLHNFPNYLNEVK 131

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
                V      ED       +D    RK  + AF+TI  GC+ FCT+C+VPY RG E S
Sbjct: 132 KKDTSVLKIQEKEDSIIENMPID----RKNSMKAFVTIMYGCNNFCTYCIVPYVRGRERS 187

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R+   + DE +KLI  G  EITLLGQNVN+  GK L+  K TF++LL  ++ I GL R+R
Sbjct: 188 RTPENIEDEIKKLISEGYKEITLLGQNVNS-YGKDLEP-KVTFAELLERVNTIDGLERVR 245

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           + TSHP+D++D +I+A    D L   +HLPVQSGS  ILK MNR +   +Y  ++ +I+ 
Sbjct: 246 FMTSHPKDLTDDVIEAIAKCDKLCEQIHLPVQSGSSEILKKMNRHYDREKYLDVVSKIKK 305

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           + P++A+S+D IVGFPGET+ DF  T+ LV ++ Y  AF+F YS R GTP +   +QV E
Sbjct: 306 LIPNVALSTDIIVGFPGETEKDFEETLSLVKEVEYDSAFTFLYSIRKGTPAAKFEDQVPE 365

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVLNSK 443
           +VK +R   L + + E     N A  G+I EVL+E   K ++ KL+GR+   + V     
Sbjct: 366 DVKHKRFNRLVEVVNEISAKKNKAYEGKIEEVLVEGTSKNDENKLMGRTRTGKLVNFIGD 425

Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468
             +IG ++ V+I      +L GE +
Sbjct: 426 KDSIGKLVNVKIIKANSFSLTGEEI 450


>gi|90022940|ref|YP_528767.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Saccharophagus
           degradans 2-40]
 gi|122995883|sp|Q21FH4|MIAB_SACD2 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|89952540|gb|ABD82555.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Saccharophagus degradans
           2-40]
          Length = 454

 Score =  462 bits (1188), Expect = e-128,   Method: Composition-based stats.
 Identities = 189/448 (42%), Positives = 285/448 (63%), Gaps = 14/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ +++++GCQMN YDS RM D+   S      ++ ++AD++++NTC IREKA EK++  
Sbjct: 11  KKLYIQTHGCQMNEYDSSRMRDLLGASHDMVPTDNPEEADVLLVNTCSIREKAQEKLFHQ 70

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR ++LK +      DL++ V GCVA  EG+ I +R+P V+++ GPQT +RLPE++E  
Sbjct: 71  LGRWKHLKEA----KPDLVIGVGGCVASQEGDAISKRAPFVDLIFGPQTLHRLPEMIETP 126

Query: 144 RF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           R  G  VVD  +   +KF+ L           G TAF+++ EGC K+CTFCVVPYTRG E
Sbjct: 127 RENGAVVVDISFPEIEKFDNLP-----EPEADGATAFVSVMEGCSKYCTFCVVPYTRGEE 181

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR    V+ E   L   GV E+ LLGQNVNA       GE    ++L+ ++++I G+ R
Sbjct: 182 VSRPAVDVLREVTHLASQGVREVNLLGQNVNA-YRDDSSGEVIDLAELIAAVADIDGIDR 240

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP + ++ LI+A+ ++  L+ +LHLPVQSGSDRIL +M R HT  EY+  + +I
Sbjct: 241 IRFTTSHPMEFTESLIQAYAEIPELVSHLHLPVQSGSDRILSAMKRGHTCLEYKSKLRKI 300

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R++RPDI+ SSDFI+GFPGET+ DF ATM L++ IG+  +FSF YSPR GTP +++ +  
Sbjct: 301 RALRPDISFSSDFIIGFPGETEADFAATMKLIEDIGFDNSFSFIYSPRPGTPAADLPDDT 360

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLN 441
            E VK +RL  LQ ++ +Q    +   VG    VL+  +  K+ G+L GR+   + V   
Sbjct: 361 PEQVKKDRLKILQTRIIQQAQEISRRMVGNTERVLVTGYSKKDPGQLSGRTENNRVVNFR 420

Query: 442 -SKNHNIGDIIKVRITDVKISTLYGELV 468
            ++   IG    + I +   ++L G L+
Sbjct: 421 CNQPELIGKFADILIEEALPNSLRGVLL 448


>gi|29348604|ref|NP_812107.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|253569055|ref|ZP_04846465.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|81443605|sp|Q8A2W0|MIAB_BACTN RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|29340509|gb|AAO78301.1| conserved hypothetical protein [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|251841074|gb|EES69155.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 455

 Score =  461 bits (1187), Expect = e-128,   Method: Composition-based stats.
 Identities = 165/446 (36%), Positives = 257/446 (57%), Gaps = 10/446 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F+++YGCQMNV DS  +  +    GY    ++++AD + +NTC IR+ A +K+ + L
Sbjct: 18  KKLFIETYGCQMNVADSEVIASVMQMAGYSVAETLEEADAVFMNTCSIRDNAEQKILNRL 77

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
               +LK    K+   L+V V GC+A+   ++++     V++VVGP  Y  LPEL+    
Sbjct: 78  EFFHSLK----KKKKALIVGVLGCMAERVKDDLITNH-HVDLVVGPDAYLTLPELIAAVE 132

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G++ ++ D S  + +  +       N   G   F++I  GC+ FCT+C+VPYTRG E S
Sbjct: 133 AGEKAINVDLSTTETYRDVIPSRICGNHISG---FVSIMRGCNNFCTYCIVPYTRGRERS 189

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R +  +++E   L+  G  E+TLLGQNVN++R +   GE  TF  LL  ++E    VR+R
Sbjct: 190 RDVESILNEVADLVAKGYKEVTLLGQNVNSYRFEKPTGEVVTFPMLLRMVAEAAPGVRIR 249

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +TTSHP+DMSD  ++    +  +  ++HLPVQSGS RILK MNR++T   Y   +  I+ 
Sbjct: 250 FTTSHPKDMSDETLEVIAQVPNVCKHIHLPVQSGSSRILKLMNRKYTREWYLDRVAAIKR 309

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN-MLEQVD 383
           + PD  +++D   GF  ET++D + ++ L+++ GY  AF FKYS R GT  S  + + V 
Sbjct: 310 IIPDCGLTTDIFSGFHSETEEDHQLSLSLMEECGYDAAFMFKYSERPGTYASKHLEDNVP 369

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNS 442
           E+VK  RL  +           N  C+G+  EVL+E   K    +L GR+   + VV + 
Sbjct: 370 EDVKVRRLNEIIALQNRLSAESNQRCIGKTYEVLVEGVSKRSRDQLFGRTEQNRVVVFDR 429

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
             H IGD + VR+T+   +TL GE V
Sbjct: 430 GTHRIGDFVNVRVTEASSATLKGEEV 455


>gi|85713017|ref|ZP_01044055.1| 2-methylthioadenine synthetase [Idiomarina baltica OS145]
 gi|85693186|gb|EAQ31146.1| 2-methylthioadenine synthetase [Idiomarina baltica OS145]
          Length = 476

 Score =  461 bits (1187), Expect = e-127,   Method: Composition-based stats.
 Identities = 202/449 (44%), Positives = 295/449 (65%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++ +VK++GCQMN YDS +M D+  S  GYE     + ADLI+LNTC IREKA EKV+
Sbjct: 1   MSKKLYVKTWGCQMNEYDSTKMADLLNSTHGYELTEEAEQADLILLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR ++LK +      DLL+ V GCVA  EG+ I  R+P V++V GPQT +RLPE+++
Sbjct: 61  HQLGRWKHLKQA----NPDLLIGVGGCVASQEGDAIRARAPFVDIVFGPQTLHRLPEMVK 116

Query: 142 RARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           +     + ++D  +   +KF+RL        +  G +AF++I EGC K+C+FCVVPYTRG
Sbjct: 117 QVGSDHQPMIDISFPEIEKFDRLP-----DPKAEGASAFVSIMEGCSKYCSFCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR +  V+ E  +L + GV E+ LLGQNVNA+RG+  DG  C F++LL+ ++ I G+
Sbjct: 172 EEVSRPVDDVIYEIAQLAEQGVREVNLLGQNVNAYRGEHFDGSVCRFAELLHLVAAIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+RYTTSHP + +D +I+A+  +  L+ +LHLPVQSGSDR+L  M R HTA EY+  I 
Sbjct: 232 DRIRYTTSHPVEFTDDIIEAYTTIPELVSHLHLPVQSGSDRVLTMMKRGHTALEYKSKIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
            ++  RPDIA+SSDFI+GFPGETD DF+ATMDL+  I +  +FSF YS R GTP +++ +
Sbjct: 292 ALKKARPDIAMSSDFIIGFPGETDADFQATMDLIQAIDFDMSFSFIYSARPGTPAADIPD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439
            V E  K +RL  LQ++L +Q ++     +     +L+    K+   +L GR+   + V 
Sbjct: 352 DVTEATKKQRLQLLQQRLNQQSMAHARRMLDTEQRILVTGPSKKNPMELTGRTENNRVVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
              + H IG  + V+IT+V  ++L GEL+
Sbjct: 412 FVGQPHMIGKFVDVKITEVLPNSLRGELI 440


>gi|167037585|ref|YP_001665163.1| (dimethylallyl)adenosine tRNA methylthiotransferase
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|320116000|ref|YP_004186159.1| MiaB family RNA modification protein [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
 gi|326389400|ref|ZP_08210967.1| RNA modification enzyme, MiaB family [Thermoanaerobacter
           ethanolicus JW 200]
 gi|229891015|sp|B0K9L4|MIAB_THEP3 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|166856419|gb|ABY94827.1| RNA modification enzyme, MiaB family [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|319929091|gb|ADV79776.1| RNA modification enzyme, MiaB family [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
 gi|325994405|gb|EGD52830.1| RNA modification enzyme, MiaB family [Thermoanaerobacter
           ethanolicus JW 200]
          Length = 471

 Score =  461 bits (1187), Expect = e-127,   Method: Composition-based stats.
 Identities = 182/446 (40%), Positives = 276/446 (61%), Gaps = 15/446 (3%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           + +++YGCQMNV+DS ++  M    GY+   +++ AD+++ NTC +RE A  +V   + +
Sbjct: 33  YHIETYGCQMNVHDSEKLAGMLEKMGYKYTENLEQADVLLFNTCAVREHAEIRVLGRVSQ 92

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           ++ LK        +L++ V+GC+ Q +   E I  +   +++V G    Y+ P+LL  A 
Sbjct: 93  MKELKAR----NPNLIIGVSGCMMQEKNVVEAIKEKYSYIDIVFGTHNIYKFPQLLWEAL 148

Query: 145 FGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             +  V+D     ++  E L +      R   + A++ I  GC+ FCT+C+VPYTRG E 
Sbjct: 149 NSQDIVIDIIEDTKNVIEELPV-----KRDSNLKAWVNIIYGCNNFCTYCIVPYTRGREK 203

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR    ++ E ++L   G  EITLLGQNVN+  GK LD E  TF+ LLY L++I+G+ R+
Sbjct: 204 SRKPEDIIAEVKELAQKGYKEITLLGQNVNS-YGKDLD-EDITFAKLLYKLNDIEGIERI 261

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+ TSHP+D+SD LI A  DLD +  +LHLPVQ+GS++ILK MNR++T   Y +IID++R
Sbjct: 262 RFMTSHPKDISDELIYAIRDLDKVCEHLHLPVQAGSNKILKKMNRKYTKEHYLEIIDKVR 321

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           S  PDIAI++D IVGFPGET++DF  T+DLV+++ +  A++F YS R GT  +NM +QVD
Sbjct: 322 SNIPDIAITTDIIVGFPGETEEDFLETLDLVERVRFDAAYTFIYSKRAGTVAANMPDQVD 381

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVLNS 442
           + VK ERL  L +   +  +  +    G+I+EVLIE   K +  KL  R+   + V    
Sbjct: 382 DAVKHERLERLIELQNKISLEKSAELRGKIVEVLIEGISKRDSNKLTSRTRTNKVVHFVG 441

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
               IG +  V+IT+ K  T+ GELV
Sbjct: 442 DESLIGKLANVKITETKAWTMQGELV 467


>gi|298386977|ref|ZP_06996531.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacteroides sp. 1_1_14]
 gi|298260127|gb|EFI02997.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacteroides sp. 1_1_14]
          Length = 455

 Score =  461 bits (1186), Expect = e-127,   Method: Composition-based stats.
 Identities = 165/446 (36%), Positives = 258/446 (57%), Gaps = 10/446 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F+++YGCQMNV DS  +  +    GY    ++++AD + +NTC IR+ A +K+ + L
Sbjct: 18  KKLFIETYGCQMNVADSEVIASVMQMAGYSVAETLEEADAVFMNTCSIRDNAEQKILNRL 77

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
               +LK    K+   L+V V GC+A+   ++++     V++VVGP  Y  LPEL+    
Sbjct: 78  EFFHSLK----KKKKALIVGVLGCMAERVKDDLITNH-HVDLVVGPDAYLTLPELIAAVE 132

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G++ ++ D S  + +  +       N   G   F++I  GC+ FCT+C+VPYTRG E S
Sbjct: 133 AGEKAINVDLSTTETYRDVIPSRICGNHISG---FVSIMRGCNNFCTYCIVPYTRGRERS 189

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R +  +++E   L+  G  E+TLLGQNVN++R +   GE  TF  LL +++E    VR+R
Sbjct: 190 RDVESILNEVADLVAKGYKEVTLLGQNVNSYRFEKPTGEVVTFPMLLRTVAEAAPGVRIR 249

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +TTSHP+DMSD  ++    +  +  ++HLPVQSGS RILK MNR++T   Y   +  I+ 
Sbjct: 250 FTTSHPKDMSDETLEVIAQVPNVCKHIHLPVQSGSSRILKLMNRKYTREWYLDRVAAIKR 309

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN-MLEQVD 383
           + PD  +++D   GF  ET++D + ++ L+++ GY  AF FKYS R GT  S  + + V 
Sbjct: 310 IIPDCGLTTDIFSGFHSETEEDHQLSLSLMEECGYDAAFMFKYSERPGTYASKHLEDNVP 369

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNS 442
           E+VK  RL  +           N  C+G+  EVL+E   K    +L GR+   + VV + 
Sbjct: 370 EDVKVRRLNEIIALQNRLSAESNQRCIGKTYEVLVEGVSKRSRDQLFGRTEQNRVVVFDR 429

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
             H IGD + VR+T+   +TL GE V
Sbjct: 430 GTHRIGDFVNVRVTEASSATLKGEEV 455


>gi|308173664|ref|YP_003920369.1| tRNA modification protein [Bacillus amyloliquefaciens DSM 7]
 gi|307606528|emb|CBI42899.1| putative conserved AdoMet radical enzyme for tRNA modification
           [Bacillus amyloliquefaciens DSM 7]
 gi|328553404|gb|AEB23896.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
           amyloliquefaciens TA208]
 gi|328911804|gb|AEB63400.1| putative AdoMet radical enzyme for tRNA modification [Bacillus
           amyloliquefaciens LL3]
          Length = 509

 Score =  461 bits (1186), Expect = e-127,   Method: Composition-based stats.
 Identities = 176/445 (39%), Positives = 258/445 (57%), Gaps = 15/445 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++F++++YGCQMN +D+  M  +F + GYE  NS+DDA++I+LNTC IRE A  KV+  L
Sbjct: 66  RKFYIRTYGCQMNEHDTEVMAGIFMALGYEATNSVDDANVILLNTCAIRENAENKVFGEL 125

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G ++ LK    K   DL++ V GC++Q E     IL++ P V+++ G    +RLPELL  
Sbjct: 126 GHLKALK----KNNPDLILGVCGCMSQEESVVNRILKKHPFVDMIFGTHNIHRLPELLSE 181

Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           A   K +V   +S E D  E L  V  G      +  ++ I  GCDKFCT+C+VPYTRG 
Sbjct: 182 AYLSKEMVIEVWSKEGDVIENLPKVRNGK-----IKGWVNIMYGCDKFCTYCIVPYTRGK 236

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR   +++ E R+L   G  EITLLGQNVNA  GK  +       DL+  L +I  + 
Sbjct: 237 ERSRRPEEIIQEVRRLASEGYKEITLLGQNVNA-YGKDFEDITYGLGDLMDELRKID-IP 294

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHPRD  D LI+       L+ ++HLPVQSGS  +LK M R++    Y +++ +
Sbjct: 295 RIRFTTSHPRDFDDHLIEVLAKGGNLLDHIHLPVQSGSSAMLKMMARKYDRERYLELVGK 354

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I++  P+ ++++D IVGFP ETD+ F  T+ L  ++ +  A++F YSPR GTP + M + 
Sbjct: 355 IKAAMPNASLTTDIIVGFPNETDEQFEETLSLYREVEFDSAYTFIYSPREGTPAAKMKDN 414

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVL 440
           V   VK ERL  L   ++E          G+ +EVL+E   K     L G +   + V  
Sbjct: 415 VPMRVKKERLQRLNDLVKEISAKKMKEYEGRTVEVLVEGESKNNPDILAGYTEKSKLVNF 474

Query: 441 NSKNHNIGDIIKVRITDVKISTLYG 465
                 IG I++V+I   K  +L G
Sbjct: 475 KGPKDAIGKIVRVKIEQAKTWSLDG 499


>gi|28057765|gb|AAO29613.1| conserved hypothetical protein [Xylella fastidiosa Temecula1]
          Length = 475

 Score =  461 bits (1186), Expect = e-127,   Method: Composition-based stats.
 Identities = 197/470 (41%), Positives = 287/470 (61%), Gaps = 22/470 (4%)

Query: 11  AHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNT 69
           AH      D+     + F+K++GCQMN YDS +M D+  + +  E  ++ ++AD+I++NT
Sbjct: 12  AHPGDPSHDRHPSRGKLFIKTHGCQMNEYDSAKMADVLTTTEALELTDNPEEADIILINT 71

Query: 70  CHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG 129
           C IREKA EKV+S LGR R LK +    G D+++ V GCVA  EGE I++R+P V++V G
Sbjct: 72  CSIREKAQEKVFSQLGRWRALKTN----GRDVIIGVGGCVASQEGETIVKRAPYVDLVFG 127

Query: 130 PQTYYRLPELL-ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
           PQT +RLP+++  R    +  VD  +   +KF+ L        R  G +AF++I EGC K
Sbjct: 128 PQTLHRLPDMIRARREQNRPQVDISFPEIEKFDHLPT-----PRAEGPSAFVSIMEGCSK 182

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK---- 244
           +C+FCVVPYTRG E+SR    V+ E   L   GV EI LLGQNVNA+RG    G      
Sbjct: 183 YCSFCVVPYTRGEEVSRPFEDVLTEIAHLATQGVREINLLGQNVNAYRGAMDPGPSNNTN 242

Query: 245 ------CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
                      L+ ++++ + + R+R+TTSHP + SD L++A+ D+  L  +LHLPVQSG
Sbjct: 243 PAPPPYADLGLLIRAIAQFESIGRIRFTTSHPLEFSDSLVEAYRDVPQLANHLHLPVQSG 302

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           SDRIL +M R +TA E++  I ++R+VRPDI+ISSDFI+GFPGE+D DF+ TM L+  IG
Sbjct: 303 SDRILSAMKRGYTALEFKSKIRKLRAVRPDISISSDFIIGFPGESDTDFQKTMQLIKDIG 362

Query: 359 YAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI 418
           + Q+FSF YS R GTP SN+ +   + +K  RL  LQK +       +   +G +  VL+
Sbjct: 363 FDQSFSFIYSRRPGTPASNLEDHTPDEIKRTRLEHLQKHINAYAADISKRMIGTVQTVLV 422

Query: 419 EKHGKEK-GKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
           E   K+   +L G++  ++ V        IG  I V IT+   ++L G +
Sbjct: 423 EGPSKKNPNELTGKTENMRPVNFPGHPRLIGQFIDVHITEALTNSLRGRV 472


>gi|329963728|ref|ZP_08301174.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacteroides fluxus YIT
           12057]
 gi|328527738|gb|EGF54730.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacteroides fluxus YIT
           12057]
          Length = 458

 Score =  460 bits (1185), Expect = e-127,   Method: Composition-based stats.
 Identities = 165/447 (36%), Positives = 259/447 (57%), Gaps = 10/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F+++YGCQMNV DS  +  +    GY    ++++AD + +NTC IR+ A +K+ + L
Sbjct: 18  KKLFIETYGCQMNVADSEVIASVMQMAGYSVAGTLEEADAVFMNTCSIRDNAEQKILNRL 77

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
               +LK  + +    L+V V GC+A+   ++++     V++VVGP  Y  LPEL+    
Sbjct: 78  EFFHSLKKKKRR----LIVGVLGCMAERVKDDLITNH-HVDLVVGPDAYLTLPELIAAVE 132

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G++ ++ + S  + +  +       N   G   F++I  GC+ FCT+C+VPYTRG E S
Sbjct: 133 AGEKAMNVELSTTETYRDVIPSRICGNHISG---FVSIMRGCNNFCTYCIVPYTRGRERS 189

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R +  +++E   L   G  E+TLLGQNVN++R +  DG   TF  LL +++E    +R+R
Sbjct: 190 RDVESILNEVADLAQKGYKEVTLLGQNVNSYRFEKPDGAVVTFPMLLRTVAEAAPGMRVR 249

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +TTSHP+DMSD  ++   D+  +  ++HLPVQSGS RILK MNRR+T   Y + +  IR 
Sbjct: 250 FTTSHPKDMSDETLQVIADMPNVCKHIHLPVQSGSSRILKLMNRRYTREWYLERVAAIRR 309

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN-MLEQVD 383
           + PD  +S+D   GF  ET++D + ++ L+++ GY  AF FKYS R GT  S  + + V 
Sbjct: 310 IIPDCGLSTDIFSGFHSETEEDHQLSLSLMEECGYDAAFMFKYSERPGTYASKHLPDDVP 369

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNS 442
           E VK  RL  +           N  CVG+  EVL+E   K    +L GR+   + VV + 
Sbjct: 370 EEVKIRRLNEIIALQNRLSAEANARCVGRTYEVLVEGVSKRSRDQLFGRTEQNRVVVFDR 429

Query: 443 KNHNIGDIIKVRITDVKISTLYGELVV 469
             H +GD + V++T+   +TL GE V+
Sbjct: 430 GTHRVGDFVTVKVTESSSATLKGEEVL 456


>gi|226943049|ref|YP_002798122.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Azotobacter
           vinelandii DJ]
 gi|226717976|gb|ACO77147.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Azotobacter vinelandii
           DJ]
          Length = 442

 Score =  460 bits (1185), Expect = e-127,   Method: Composition-based stats.
 Identities = 202/450 (44%), Positives = 288/450 (64%), Gaps = 13/450 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++ F++++GCQMN YDS RM D+    Q  E   +  +AD+I+LNTC IREKA EKV+
Sbjct: 1   MAKKLFIETHGCQMNEYDSSRMADLLGEHQALELTENPAEADVILLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S LGR R LK    K    L++ V GCVA  EG  I  R+P V+VV GPQT +RLPE+++
Sbjct: 61  SQLGRWRELK----KRNPALVIGVGGCVASQEGAAIRERAPYVDVVFGPQTLHRLPEMID 116

Query: 142 RARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
            AR  ++  VD  +   +KF+RL        R  G +AF+++ EGC K+C++CVVPYTRG
Sbjct: 117 AARSTRQPQVDVSFPEIEKFDRLP-----EPRVDGPSAFVSVMEGCSKYCSYCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR    V+ E   L +NGV E+TLLGQNVN +R    DG    F++LL+ ++ + G+
Sbjct: 172 EEVSRPPEDVLAEVIHLAENGVREVTLLGQNVNGYRATTADGRPVDFAELLHLVAAVDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            RLRYTTSHP + SD +I AH ++  L+ ++HLPVQSGSDRIL +M R HTA EY+  I 
Sbjct: 232 DRLRYTTSHPLEFSDAIIAAHAEIPELVKFVHLPVQSGSDRILAAMKRNHTALEYKSRIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++++  PDI+ISSDFIVGFPGET+ DF  TM L++++G+  +FSF +SPR GTP + + +
Sbjct: 292 KLKAAVPDISISSDFIVGFPGETEQDFAQTMKLIEEVGFDFSFSFVFSPRPGTPAAELPD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVV 439
              E +K +RL  LQ ++ +Q    +   VG I  +L+  +  K+ G L GR+   + V 
Sbjct: 352 DTPEELKKQRLQILQNRIYQQGFEISRRMVGSIQRILVSDYSKKDPGMLQGRTENNRIVN 411

Query: 440 LNS-KNHNIGDIIKVRITDVKISTLYGELV 468
             S     IG  ++VRI D    +L G L+
Sbjct: 412 FTSNDPRLIGQFVRVRIDDALPHSLRGSLL 441


>gi|77747710|ref|NP_779964.2| hypothetical protein PD1779 [Xylella fastidiosa Temecula1]
 gi|182682396|ref|YP_001830556.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Xylella
           fastidiosa M23]
 gi|229891033|sp|B2I8U1|MIAB_XYLF2 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|229891222|sp|Q87AP4|MIAB_XYLFT RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|182632506|gb|ACB93282.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Xylella fastidiosa M23]
 gi|307578676|gb|ADN62645.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Xylella
           fastidiosa subsp. fastidiosa GB514]
          Length = 497

 Score =  460 bits (1185), Expect = e-127,   Method: Composition-based stats.
 Identities = 197/470 (41%), Positives = 287/470 (61%), Gaps = 22/470 (4%)

Query: 11  AHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNT 69
           AH      D+     + F+K++GCQMN YDS +M D+  + +  E  ++ ++AD+I++NT
Sbjct: 34  AHPGDPSHDRHPSRGKLFIKTHGCQMNEYDSAKMADVLTTTEALELTDNPEEADIILINT 93

Query: 70  CHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG 129
           C IREKA EKV+S LGR R LK +    G D+++ V GCVA  EGE I++R+P V++V G
Sbjct: 94  CSIREKAQEKVFSQLGRWRALKTN----GRDVIIGVGGCVASQEGETIVKRAPYVDLVFG 149

Query: 130 PQTYYRLPELL-ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
           PQT +RLP+++  R    +  VD  +   +KF+ L        R  G +AF++I EGC K
Sbjct: 150 PQTLHRLPDMIRARREQNRPQVDISFPEIEKFDHLPT-----PRAEGPSAFVSIMEGCSK 204

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK---- 244
           +C+FCVVPYTRG E+SR    V+ E   L   GV EI LLGQNVNA+RG    G      
Sbjct: 205 YCSFCVVPYTRGEEVSRPFEDVLTEIAHLATQGVREINLLGQNVNAYRGAMDPGPSNNTN 264

Query: 245 ------CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
                      L+ ++++ + + R+R+TTSHP + SD L++A+ D+  L  +LHLPVQSG
Sbjct: 265 PAPPPYADLGLLIRAIAQFESIGRIRFTTSHPLEFSDSLVEAYRDVPQLANHLHLPVQSG 324

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           SDRIL +M R +TA E++  I ++R+VRPDI+ISSDFI+GFPGE+D DF+ TM L+  IG
Sbjct: 325 SDRILSAMKRGYTALEFKSKIRKLRAVRPDISISSDFIIGFPGESDTDFQKTMQLIKDIG 384

Query: 359 YAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI 418
           + Q+FSF YS R GTP SN+ +   + +K  RL  LQK +       +   +G +  VL+
Sbjct: 385 FDQSFSFIYSRRPGTPASNLEDHTPDEIKRTRLEHLQKHINAYAADISKRMIGTVQTVLV 444

Query: 419 EKHGKEK-GKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
           E   K+   +L G++  ++ V        IG  I V IT+   ++L G +
Sbjct: 445 EGPSKKNPNELTGKTENMRPVNFPGHPRLIGQFIDVHITEALTNSLRGRV 494


>gi|329923527|ref|ZP_08279002.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Paenibacillus sp. HGF5]
 gi|328941235|gb|EGG37532.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Paenibacillus sp. HGF5]
          Length = 519

 Score =  460 bits (1185), Expect = e-127,   Method: Composition-based stats.
 Identities = 176/449 (39%), Positives = 260/449 (57%), Gaps = 14/449 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
             + + V +YGCQMN +DS  ++ +    GY        AD+I+LNTC IRE A +KV+ 
Sbjct: 72  AGKHYIVYTYGCQMNEHDSETIKGLLELMGYRATEDRKQADIILLNTCAIRENAEDKVFG 131

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELL 140
            LG +++LK        D+L+ V GC++Q E     IL++   V+++ G    +RLP L+
Sbjct: 132 ELGHLKHLKTE----KPDMLLGVCGCMSQEESVVNRILQKHGFVDLIFGTHNVHRLPHLI 187

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           + A F K +V   +S E       IV+    ++ G+  ++ I  GCDKFCT+C+VPYTRG
Sbjct: 188 QEALFSKEMVVEVWSKEG-----DIVENLPKKREGLRGWVNIMYGCDKFCTYCIVPYTRG 242

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E SR    V+ E R+L   G  EITLLGQNVNA  GK  +  +  F DL+  + +I  +
Sbjct: 243 KERSRRPEDVIAEVRELARQGYKEITLLGQNVNA-YGKDFEDIQYRFGDLMDDIHKID-I 300

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+TTSHPRD  D LI+       L+ ++HLPVQSGS ++LK M+R++T   Y ++  
Sbjct: 301 PRVRFTTSHPRDFDDHLIEVLAKGGNLVEHIHLPVQSGSSQVLKKMSRKYTRETYLELAH 360

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           +I+   P++A ++D IVGFPGETD+ F  T+ LV ++GY  A++F YSPR GTP + M +
Sbjct: 361 KIKKAIPNVAFTTDIIVGFPGETDEQFEETLSLVREVGYDSAYTFIYSPREGTPAAVMED 420

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLVGRSPWLQSVV 439
            V   VK+ERL  L   + E     ND  +G  +EVL+E   K     L GR+   + V 
Sbjct: 421 NVPMEVKSERLQRLNAAINEYSRKSNDRLLGSTVEVLVEGVSKNNDSMLSGRTRTNKLVH 480

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  +G  + VRITD K   + G+++
Sbjct: 481 FEGSTDLVGSFVNVRITDTKTWYIKGDMI 509


>gi|148379760|ref|YP_001254301.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Clostridium botulinum A
           str. ATCC 3502]
 gi|153933044|ref|YP_001384058.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Clostridium botulinum A
           str. ATCC 19397]
 gi|153936669|ref|YP_001387598.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Clostridium botulinum A
           str. Hall]
 gi|229890482|sp|A7FUL1|MIAB_CLOB1 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|229890486|sp|A5I2S3|MIAB_CLOBH RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|148289244|emb|CAL83340.1| putative radical SAM superfamily protein [Clostridium botulinum A
           str. ATCC 3502]
 gi|152929088|gb|ABS34588.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Clostridium botulinum A
           str. ATCC 19397]
 gi|152932583|gb|ABS38082.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Clostridium botulinum A
           str. Hall]
          Length = 450

 Score =  460 bits (1184), Expect = e-127,   Method: Composition-based stats.
 Identities = 175/445 (39%), Positives = 263/445 (59%), Gaps = 13/445 (2%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           FF++++GCQMN  DS ++  M   +GY R    ++AD+I+ NTC +RE A  KVY  LG 
Sbjct: 16  FFIETWGCQMNEEDSEKLSGMLKKEGYIRTEERENADVIIFNTCCVRENAELKVYGNLGI 75

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           ++ LK+       +L++ V GC+ Q +G  E I ++ P V++++G    +  P  L   +
Sbjct: 76  LKGLKSK----NPNLIIAVTGCMMQQKGMAETIKKKFPFVDIIIGTHNLHNFPNYLNEVK 131

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
                V      E+       +D    RK  + AF+TI  GC+ FCT+C+VPY RG E S
Sbjct: 132 KKDTSVLKIQEKENSIIENMPID----RKNSMKAFVTIMYGCNNFCTYCIVPYVRGRERS 187

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R+   +  E +KLI  G  EITLLGQNVN+  GK L+    TF++LL  ++ I+GL R+R
Sbjct: 188 RTPENIEAEIKKLISEGYKEITLLGQNVNS-YGKDLEPN-VTFAELLKRVNNIEGLERVR 245

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           + TSHP+D++D +I+A    D L   +HLPVQSGS  ILK MNR +   +Y  ++ +I+ 
Sbjct: 246 FMTSHPKDLTDDVIEAIAKCDKLCEQIHLPVQSGSSEILKKMNRHYDREKYLDVVSKIKK 305

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           + P++A+S+D IVGFPGET+ DF  T+ LV ++ Y  AF+F YS R GTP +   +QV E
Sbjct: 306 LIPNVALSTDIIVGFPGETEKDFEETLSLVKEVEYDSAFTFLYSIRKGTPAAKFEDQVPE 365

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVLNSK 443
           +VK +R   L + L E     N A  G+I EVL+E   K ++ KL+GR+   + V     
Sbjct: 366 DVKHKRFNRLVEVLNEISAKKNKAYEGKIEEVLVEGTSKNDENKLMGRTRTGKLVNFIGD 425

Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468
             +IG+++ V+I      +L GE +
Sbjct: 426 KDSIGELVNVKIIKANSFSLTGEEI 450


>gi|126727641|ref|ZP_01743473.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Rhodobacterales bacterium
           HTCC2150]
 gi|126703057|gb|EBA02158.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Rhodobacterales bacterium
           HTCC2150]
          Length = 424

 Score =  460 bits (1184), Expect = e-127,   Method: Composition-based stats.
 Identities = 234/433 (54%), Positives = 311/433 (71%), Gaps = 9/433 (2%)

Query: 36  MNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRI 95
           MNVYDS RM +   ++GYE+    D AD+I+LNTCHIREKAAEK+YS LGR++  K +  
Sbjct: 1   MNVYDSERMAEALGTKGYEQTTDADQADMILLNTCHIREKAAEKMYSELGRLKQFKLA-- 58

Query: 96  KEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYS 155
               ++   VAGCVAQAEG EI+ R P+V++VVGPQ+Y+RLP++ +    G++ +DTD+ 
Sbjct: 59  --KPEMKFAVAGCVAQAEGGEIIERQPMVDLVVGPQSYHRLPKMADAIDRGEKAIDTDFP 116

Query: 156 VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEAR 215
            EDKFE L         +R  +AFLT+QEGCDKFCTFCVVPYTRG E+SR + +++ EAR
Sbjct: 117 EEDKFEELK---DRPKARRAPSAFLTVQEGCDKFCTFCVVPYTRGAEVSRPVDRILREAR 173

Query: 216 KLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSD 275
           +L++ GV EI LLGQNVNA+ G+G DG+  T + L+  ++ I+GL R+R+TTSHPRDM  
Sbjct: 174 ELVERGVAEINLLGQNVNAYHGEGPDGD-WTLAQLIREMATIEGLERIRFTTSHPRDMEQ 232

Query: 276 CLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDF 335
            LI AHGD   LMPYLHLPVQSGSD+ILK+MNR HT  EY  +I RIR VRPD+ +S DF
Sbjct: 233 DLIDAHGDCAKLMPYLHLPVQSGSDKILKAMNRGHTREEYFALIKRIRDVRPDLLLSGDF 292

Query: 336 IVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQ 395
           IVGFPGET++DF  TMDLV+++G+ QA+SFKYS R GTP +    QVDE+VK+ERL  LQ
Sbjct: 293 IVGFPGETEEDFMDTMDLVEQVGFGQAYSFKYSTRPGTPAAERA-QVDEDVKSERLQRLQ 351

Query: 396 KKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRI 455
             L +QQ +  DA VG+   VL EK G++ G+L+G+S  L +V   +    IG + +VR+
Sbjct: 352 ALLGKQQKAAQDAMVGRETTVLFEKQGRDPGQLIGKSENLHAVHAFADKSLIGTVRRVRV 411

Query: 456 TDVKISTLYGELV 468
                ++L GEL+
Sbjct: 412 IKSLTNSLTGELI 424


>gi|326202162|ref|ZP_08192032.1| RNA modification enzyme, MiaB family [Clostridium papyrosolvens DSM
           2782]
 gi|325987957|gb|EGD48783.1| RNA modification enzyme, MiaB family [Clostridium papyrosolvens DSM
           2782]
          Length = 477

 Score =  460 bits (1184), Expect = e-127,   Method: Composition-based stats.
 Identities = 177/456 (38%), Positives = 273/456 (59%), Gaps = 15/456 (3%)

Query: 17  IVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA 76
           ++     P R+ ++++GCQMN  DS R+  M    GY   +   D+DLI+ NTC +RE A
Sbjct: 33  VISGSGKPARYNIETFGCQMNENDSERLSGMLSEMGYSECSERKDSDLIIFNTCCVRENA 92

Query: 77  AEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYY 134
            +KVY  LG ++ LK        +L++ + GC+ Q +   E I +    V+++ G    Y
Sbjct: 93  EQKVYGHLGALKKLKE----TNPNLVIAICGCMMQQKEVVEHIKKTYKHVDIIFGTHNLY 148

Query: 135 RLPELLERARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC 193
           + PELL  A   +  V+D   S     E + I     +RK  + A++T+  GCD FC++C
Sbjct: 149 KFPELLNTAITTRSTVIDVWDSTGSIAENMPI-----SRKDNIKAWVTVMYGCDNFCSYC 203

Query: 194 VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS 253
           +VPY RG E SRSL ++ +E  KL  +G  EITLLGQNVN+  GK L+G+  TF+ LL  
Sbjct: 204 IVPYVRGRERSRSLEEIKNEVEKLAVDGCKEITLLGQNVNS-YGKDLEGD-LTFAGLLRE 261

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
           L++I+G+ R+R+ TSHP+D+S+ LI A  D + +  +LHLPVQSGS ++L  MNR++T  
Sbjct: 262 LNKIQGIERIRFMTSHPKDLSEELIYAIRDCEKVCEHLHLPVQSGSSKVLDEMNRKYTKE 321

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
           +Y ++I++++S  P IA+S+D IVGFPGET++DF  T+D+V K  +  A++F YS R GT
Sbjct: 322 QYLKLIEKVKSNIPGIALSTDIIVGFPGETEEDFDETLDVVAKARFDMAYTFLYSKRTGT 381

Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRS 432
           P +   EQV E+VK +R   L +   +     ND  +G+ +EVL+E   K  K    GR+
Sbjct: 382 PAAKNPEQVPESVKKQRFDKLLELQNKISKEINDEFLGKEMEVLVEGLSKSSKTTYTGRT 441

Query: 433 PWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
              + V        +G ++KV+I +++  +L G  V
Sbjct: 442 RENKIVNFKGNPDMVGKLVKVKIDEIQTWSLLGTKV 477


>gi|237668852|ref|ZP_04528836.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Clostridium butyricum E4
           str. BoNT E BL5262]
 gi|237657200|gb|EEP54756.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Clostridium butyricum E4
           str. BoNT E BL5262]
          Length = 456

 Score =  460 bits (1184), Expect = e-127,   Method: Composition-based stats.
 Identities = 179/445 (40%), Positives = 265/445 (59%), Gaps = 13/445 (2%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           FF++++GCQMN  DS ++  M   QGY      ++A +I+ NTC +RE A  KV+  LGR
Sbjct: 21  FFIQTFGCQMNEEDSEKLSGMLKRQGYTPTEDKEEASIIIFNTCCVRENAENKVFGNLGR 80

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           ++  K +      DL++ + GC+ Q +G  ++IL   P V+++ G    Y+ PE L R +
Sbjct: 81  LKKRKEN----NPDLIIAICGCMMQQKGMADKILNEYPYVDIIFGTHNSYKFPEYLNRVK 136

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
                +   +  E +      +D    RK  V AF+T+  GC+ FCT+CVVPY RG E S
Sbjct: 137 TEGVQIKEIFDKEAEIVEGVPID----RKSSVKAFVTVMYGCNNFCTYCVVPYVRGRERS 192

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R    + +E + L+  G  EITLLGQNVN+  GKGL+ E+ TF+ LL  ++EI+GL R+R
Sbjct: 193 RKPQDIENEIKGLVAEGYKEITLLGQNVNS-YGKGLE-EEITFAQLLRRINEIEGLERVR 250

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           + TSHP+D++  +I+A  D D L   +HLP+QSGSD+ILK MNR +T   Y  +   IR 
Sbjct: 251 FMTSHPKDLNMDVIEAIRDCDKLCEQIHLPIQSGSDQILKVMNRHYTRDYYLNLAKAIRK 310

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             PD+  S+D IVGFPGET++DF+AT+DLV ++ Y  AF+F YS R  TP   M  Q+ +
Sbjct: 311 EIPDVTFSTDLIVGFPGETEEDFQATLDLVREVKYDAAFTFIYSRRNHTPADKMENQIPD 370

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVLNSK 443
           +VK ER   L + + E  V  N A  G+++EVL+E   K ++ +L GR+   + V     
Sbjct: 371 DVKHERFNRLVEAVNEGIVVGNKAMEGKVVEVLVEGTSKNDESRLTGRTRNAKLVNFPGC 430

Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468
              IG ++ V+I      +L GE+V
Sbjct: 431 KELIGKLVNVKIVKANSFSLVGEIV 455


>gi|297544628|ref|YP_003676930.1| MiaB family RNA modification protein [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
 gi|296842403|gb|ADH60919.1| RNA modification enzyme, MiaB family [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
          Length = 471

 Score =  460 bits (1183), Expect = e-127,   Method: Composition-based stats.
 Identities = 182/446 (40%), Positives = 275/446 (61%), Gaps = 15/446 (3%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           + +++YGCQMNV+DS ++  M    GY+   +++ AD+++ NTC +RE A  +V   + +
Sbjct: 33  YHIETYGCQMNVHDSEKLAGMLEKMGYKYTENLEQADVLLFNTCAVREHAEIRVLGRVSQ 92

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           ++ LK        +L++ V+GC+ Q +   E I  +   +++V G    Y+ P+LL  A 
Sbjct: 93  MKELKAR----NPNLIIGVSGCMMQEKNVVEAIKEKYSYIDIVFGTHNIYKFPQLLWEAL 148

Query: 145 FGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             +  V+D     ++  E L +      R   + A++ I  GC+ FCT+C+VPYTRG E 
Sbjct: 149 NSQDIVIDVIEDTKNVIEELPV-----KRDSNLKAWVNIIYGCNNFCTYCIVPYTRGREK 203

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR    +V E ++L   G  EITLLGQNVN+  GK LD E  TF+ LLY L+EI+G+ R+
Sbjct: 204 SRKPEDIVAEVKELAQKGYKEITLLGQNVNS-YGKDLD-ENITFAKLLYKLNEIEGIERI 261

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+ TSHP+D+SD LI A  DL+ +  +LHLPVQ+GS++ILK MNR++T   Y +IID++R
Sbjct: 262 RFMTSHPKDISDELIYAMRDLNKVCEHLHLPVQAGSNKILKKMNRKYTKEHYLEIIDKVR 321

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           S  PDIAI++D IVGFPGET++DF  T+DLV ++ +  A++F YS R GT  +NM +QVD
Sbjct: 322 SNIPDIAITTDIIVGFPGETEEDFLETLDLVQRVRFDAAYTFIYSKRAGTVAANMPDQVD 381

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVLNS 442
           + VK ERL  L +   +  +  +    G+I+EVLIE   K +  KL  R+   + V    
Sbjct: 382 DAVKHERLERLIELQNKISLEKSAELRGKIVEVLIEGISKRDSNKLTSRTRTNKVVHFVG 441

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
               IG +  ++IT+ K  T+ GELV
Sbjct: 442 DESLIGKLANIKITETKAWTMQGELV 467


>gi|315127051|ref|YP_004069054.1| involved in methylthiolation of isopentenylated A37 derivatives in
           tRNA, Fe-S protein [Pseudoalteromonas sp. SM9913]
 gi|315015565|gb|ADT68903.1| involved in methylthiolation of isopentenylated A37 derivatives in
           tRNA, Fe-S protein [Pseudoalteromonas sp. SM9913]
          Length = 468

 Score =  460 bits (1183), Expect = e-127,   Method: Composition-based stats.
 Identities = 194/437 (44%), Positives = 281/437 (64%), Gaps = 13/437 (2%)

Query: 36  MNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSR 94
           MN YDS +M D+  +  GY+      DAD+I+LNTC IREKA EKV+  LGR + LK+  
Sbjct: 1   MNEYDSQKMADLLDATNGYQLTEEAADADVILLNTCSIREKAQEKVFHQLGRWKLLKD-- 58

Query: 95  IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR--FGKRVVDT 152
             +  DL++ V GCVA  EG+ I +R+P V+V+ GPQT +RLPE++++ +   G  VVD 
Sbjct: 59  --DKPDLIIGVGGCVASQEGDSIRQRAPFVDVIFGPQTLHRLPEMIKQVQGNKGSSVVDI 116

Query: 153 DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVD 212
            +   +KF+RL        +  G +AF++I EGC K+CTFCVVPYTRG E+SR +  V+ 
Sbjct: 117 SFPEIEKFDRLP-----EPKAEGPSAFVSIMEGCSKYCTFCVVPYTRGEEVSRPVDDVLL 171

Query: 213 EARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
           E  +L + GV E+ LLGQNVNA+RG   DGE C FSDL+  ++ I G+ R+RYTTSHP +
Sbjct: 172 EVAQLAEQGVREVNLLGQNVNAYRGDTHDGEICYFSDLIRLVAAIDGIDRIRYTTSHPVE 231

Query: 273 MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAIS 332
            +  +I A+ D+  L+ +LHLPVQSGSDR+L  M R HTA EY+  I ++R +RP++++S
Sbjct: 232 FTPDIIDAYADVPELVDHLHLPVQSGSDRVLNLMKRGHTALEYKSTIRKLRKIRPNLSMS 291

Query: 333 SDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLL 392
           SDFI+GFPGE+  DF ATM+L++ IG+  +FSF YS R GTP +++ + V E  K ERL 
Sbjct: 292 SDFIIGFPGESKADFEATMNLINDIGFDMSFSFIYSARPGTPAADLPDDVTEQEKKERLY 351

Query: 393 CLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNSKNHNIGDII 451
            LQ ++ +     +         +L+E   K+   +L GR+   + V     +  IG  +
Sbjct: 352 LLQNRITQMAQQISRQMFDTEQRILVEGPSKKNPMELRGRTENNRVVNFVGPHTVIGQFV 411

Query: 452 KVRITDVKISTLYGELV 468
            VRIT+   ++L G+L+
Sbjct: 412 DVRITEALPNSLRGDLI 428


>gi|312143592|ref|YP_003995038.1| RNA modification enzyme, MiaB family [Halanaerobium sp.
           'sapolanicus']
 gi|311904243|gb|ADQ14684.1| RNA modification enzyme, MiaB family [Halanaerobium sp.
           'sapolanicus']
          Length = 442

 Score =  459 bits (1182), Expect = e-127,   Method: Composition-based stats.
 Identities = 167/447 (37%), Positives = 264/447 (59%), Gaps = 13/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + + + +YGCQMN +DS ++  M  + GY   N +++AD+++LNTC IRE A  KV+  L
Sbjct: 5   KYYHIITYGCQMNEHDSEKLAGMLENIGYNNTNKLENADIVLLNTCTIRENAELKVFGKL 64

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQ--AEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
           G+++  K        DL++ + GC+ Q     EEI ++   V+++ G    +++PEL+++
Sbjct: 65  GQLKEYKRK----NPDLIIGIGGCMMQLEEPVEEIYKKYRHVDLIFGTHNIHQVPELIKK 120

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
               +  V   +  E+      I D    R+   +A+++I +GCD FCT+C+VPY RG E
Sbjct: 121 IEKNRERVVEVWDQEEGL----IPDLPSQRESEHSAWISIIQGCDNFCTYCIVPYVRGRE 176

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR L  ++ EA KL   GV E+TLLGQNVN+  G  L  E+  F  LL  L+++  L R
Sbjct: 177 RSRPLEAIIKEAEKLAAEGVKEVTLLGQNVNS-YGNDL-AEEIDFPLLLEELNKVDSLAR 234

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+ TSHPRD S+ L+ A  +L+ +  ++HLP+QSGS++ILK MNR ++   Y   +  I
Sbjct: 235 IRFMTSHPRDFSEKLLLAIKNLEKVAKHIHLPIQSGSNKILKEMNRGYSREYYIDTVKEI 294

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           ++  P+ AIS+DFIVGFPGE+D+DF  T+ LV ++ +  A++F YSPR GTP +   +Q+
Sbjct: 295 QNKMPEAAISTDFIVGFPGESDEDFEQTLKLVKELRFDMAYTFIYSPRSGTPAAKREDQI 354

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLN 441
            E VK ERL  L           N   +G+I ++L+     +++    GR+   +   +N
Sbjct: 355 AEEVKKERLNKLMDIQNRISYQKNQKLIGKIQKILVTGPSNRDENVYEGRTGTNKICFIN 414

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
            +   IG I+KV+I   K  TL G +V
Sbjct: 415 KRPDLIGKIVKVKIDSAKSWTLQGTVV 441


>gi|187779606|ref|ZP_02996079.1| hypothetical protein CLOSPO_03202 [Clostridium sporogenes ATCC
           15579]
 gi|187773231|gb|EDU37033.1| hypothetical protein CLOSPO_03202 [Clostridium sporogenes ATCC
           15579]
          Length = 450

 Score =  459 bits (1182), Expect = e-127,   Method: Composition-based stats.
 Identities = 172/446 (38%), Positives = 259/446 (58%), Gaps = 13/446 (2%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +FF++++GCQMN  DS ++  M   + Y R    ++AD+I+ NTC +RE A  KVY  LG
Sbjct: 15  KFFIETWGCQMNEEDSEKLSGMLKRESYIRTEEREEADVIIFNTCCVRENAELKVYGNLG 74

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERA 143
            ++ LK        +L++ V GC+ Q  G  E I ++ P V++++G    +     L   
Sbjct: 75  ILKGLKAK----NPNLIIAVTGCMMQQAGMAETIKKKFPFVDIIIGTHNLHNFSNYLNEV 130

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           +     V      ED       +D    RK  + AF+TI  GC+ FCT+C+VPY RG E 
Sbjct: 131 KKKHTSVLKIQEKEDSIIENMPID----RKNSMKAFVTIMYGCNNFCTYCIVPYVRGRER 186

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR+   + DE + L+  G  EITLLGQNVN+  GK L+    TF++LL  ++ I+GL R+
Sbjct: 187 SRTPENIEDEIKNLVSKGYKEITLLGQNVNS-YGKDLEPN-VTFAELLKRVNTIEGLERV 244

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+ TSHP+D++D +I+A    D L   +HLPVQSGS  +LK MNR +   +Y  ++ +I+
Sbjct: 245 RFMTSHPKDLTDDVIEAIAKCDKLCEQIHLPVQSGSSDMLKKMNRHYDREKYLDVVSKIK 304

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
            + P++A+S+D IVGFPGET+ DF  T+ LV  + Y  AF+F YS R GTP +   +QV 
Sbjct: 305 KLIPNVALSTDIIVGFPGETEKDFEETLSLVKTVEYDSAFTFLYSIRKGTPAAKFDDQVP 364

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVLNS 442
           E+VK +R   L + + E     N A  G+I EVL+E   K ++ KL+GR+   + V    
Sbjct: 365 EDVKHKRFNRLVEVVNEISAKKNKAYEGKIEEVLVEGTSKNDENKLMGRTRAGKLVNFIG 424

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
              +IG ++ V+IT     +L GE +
Sbjct: 425 NKESIGKLVNVKITKANSFSLTGEEI 450


>gi|15614935|ref|NP_243238.1| hypothetical protein BH2372 [Bacillus halodurans C-125]
 gi|81786524|sp|Q9KAB7|MIAB_BACHD RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|10174992|dbj|BAB06091.1| BH2372 [Bacillus halodurans C-125]
          Length = 538

 Score =  459 bits (1182), Expect = e-127,   Method: Composition-based stats.
 Identities = 175/468 (37%), Positives = 267/468 (57%), Gaps = 15/468 (3%)

Query: 5   IKLIGVAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADL 64
           +K++    ++ + +      ++F V++YGCQMN++DS  M  M    G+E  +   DAD+
Sbjct: 75  VKVLRPDDLIPEDMKTIGAGKKFLVRTYGCQMNIHDSENMAGMLKEMGFEATDETTDADV 134

Query: 65  IVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSP 122
           I++NTC IRE A  KV+  +G ++ LK    +E  +L++ V GC++Q EG    I+++  
Sbjct: 135 ILINTCAIRENAENKVFGEIGNLKQLK----REKPELVIGVCGCMSQEEGVVNRIMQKHQ 190

Query: 123 IVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLT 181
            ++++ G    +RLP LL  A FGK ++   +S E D  E +        R+    A++ 
Sbjct: 191 HIDMIFGTHNIHRLPHLLRNALFGKEMIIEVWSKEGDIVENMPRA-----REGKTQAWVN 245

Query: 182 IQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD 241
           I  GCDKFCT+C+VPYTRG E SR    ++ E R L   G  EITLLGQNVNA  GK L 
Sbjct: 246 IMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEVRDLARQGYKEITLLGQNVNA-YGKDLA 304

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
                  DL+  + +I  + R+R+TTSHPRD  D LI+       L+ ++HLPVQ G+  
Sbjct: 305 DLDYGLGDLMDEIRKID-IPRVRFTTSHPRDFDDHLIEVLAKGGNLVEHIHLPVQHGNSE 363

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
           ILK M R++T  +Y ++  +I+   P+ + ++D IVGFP ETD+ F  T+ LV +I +  
Sbjct: 364 ILKLMARKYTREQYVELAQKIKRAIPNASFTTDLIVGFPNETDEQFEDTLSLVREIEFDS 423

Query: 362 AFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKH 421
           AF++ YSPR GTP + M + V   VK ERL  L   + +     N     +++EVL+E  
Sbjct: 424 AFTYIYSPREGTPAAKMKDNVPMEVKRERLARLNALVNDISAQKNLEYQDKVVEVLVEGE 483

Query: 422 G-KEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
             K+   L GR+   + V        IGDI+ V++T+ K  +L GE+V
Sbjct: 484 SKKDPNILAGRTRTNRLVNFKGPKSVIGDIVYVKVTEAKTWSLNGEMV 531


>gi|289578350|ref|YP_003476977.1| RNA modification enzyme, MiaB family [Thermoanaerobacter italicus
           Ab9]
 gi|289528063|gb|ADD02415.1| RNA modification enzyme, MiaB family [Thermoanaerobacter italicus
           Ab9]
          Length = 471

 Score =  459 bits (1182), Expect = e-127,   Method: Composition-based stats.
 Identities = 182/446 (40%), Positives = 276/446 (61%), Gaps = 15/446 (3%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           + +++YGCQMNV+DS ++  M    GY+   +++ AD+++ NTC +RE A  +V   + +
Sbjct: 33  YHIETYGCQMNVHDSEKLAGMLEKMGYKYTENLEQADVLLFNTCAVREHAEIRVLGRVSQ 92

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           ++ LK        +L++ V+GC+ Q +   E I  +   +++V G    Y+ P+LL  A 
Sbjct: 93  MKELKAR----NPNLIIGVSGCMMQEKNVVEAIKEKYSYIDIVFGTHNIYKFPQLLWEAL 148

Query: 145 FGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             +  V+D     ++  E L +      R   + A++ I  GC+ FCT+C+VPYTRG E 
Sbjct: 149 NSQDIVIDVIEDTKNVIEELPV-----KRDSNLKAWVNIIYGCNNFCTYCIVPYTRGREK 203

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR    +V E ++L   G  EITLLGQNVN+  GK LD E  TF+ LLY L+EI+G+ R+
Sbjct: 204 SRKPEDIVAEVKELAQKGYKEITLLGQNVNS-YGKDLD-EDITFAKLLYKLNEIEGIERI 261

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+ TSHP+D+SD LI A  DL+ +  +LHLPVQ+GS++ILK MNR++T   Y +IID++R
Sbjct: 262 RFMTSHPKDISDELIYAMRDLNKVCEHLHLPVQAGSNKILKKMNRKYTKEHYLEIIDKVR 321

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           S  PDIAI++D IVGFPGET++DF  T+DLV+++ +  A++F YS R GT  +NM +QVD
Sbjct: 322 SNIPDIAITTDIIVGFPGETEEDFLETLDLVERVRFDAAYTFIYSKRAGTVAANMPDQVD 381

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVLNS 442
           + VK ERL  L +   +  +  +    G+I+EVLIE   K +  KL  R+   + V    
Sbjct: 382 DAVKHERLERLIELQNKISLEKSAELRGKIVEVLIEGISKRDSNKLTSRTRTNKVVHFVG 441

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
               IG +  ++IT+ K  T+ GELV
Sbjct: 442 DESLIGKLANIKITETKAWTMQGELV 467


>gi|120555649|ref|YP_960000.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Marinobacter aquaeolei
           VT8]
 gi|229890561|sp|A1U494|MIAB_MARAV RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|120325498|gb|ABM19813.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Marinobacter aquaeolei
           VT8]
          Length = 448

 Score =  459 bits (1182), Expect = e-127,   Method: Composition-based stats.
 Identities = 197/452 (43%), Positives = 284/452 (62%), Gaps = 15/452 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++ ++K++GCQMN YDS RM D+  + +  E  ++ DDAD+++LNTC IREKA EKV+
Sbjct: 1   MAKKLYIKTHGCQMNEYDSARMADLLKTGEAVEVTDNADDADILLLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR ++LK        DL++ V GCVA  EG+ I+ R+P V++V GPQT +RLP+++ 
Sbjct: 61  HQLGRWKSLKTK----KPDLIIGVGGCVASQEGQAIIDRAPYVDMVFGPQTLHRLPDMIT 116

Query: 142 RAR---FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
             R    G  VVD  +   +KF+ L           G +AF++I EGC K+CTFCVVPYT
Sbjct: 117 EVRTKGNGVGVVDVSFPEIEKFDNLP-----EPGADGPSAFVSIMEGCSKYCTFCVVPYT 171

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258
           RG E+SR +  V+ E   L   GV E+ LLGQNVNA+RG+  DG++   ++L+  ++ I 
Sbjct: 172 RGEEVSRPVDDVIAEVAHLAAQGVREVNLLGQNVNAYRGETHDGDQMDLAELIEVIATID 231

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           G+ R+RYTTSHP + SD LI+ +  +  L+ +LHLPVQSGSDRIL +M R HTA EY+  
Sbjct: 232 GIDRIRYTTSHPVEFSDALIEVYERVPELVSHLHLPVQSGSDRILAAMKRGHTALEYKSK 291

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           + R+R +RPDI+ SSDFI+GFPGETD DF  TM L++ IG+  +FSF YS R GTP S++
Sbjct: 292 LRRLRKIRPDISFSSDFIIGFPGETDKDFEDTMKLINDIGFDMSFSFIYSARPGTPASDL 351

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQS 437
            +     VK +RL  LQ +L +  +  +   VG    +L+     K+ G+  GR+   + 
Sbjct: 352 PDDTPMEVKKQRLSILQDRLNQNVMDISRKMVGSTQRILVTGLSKKDPGEYAGRTENNRI 411

Query: 438 VVLNSKNHN-IGDIIKVRITDVKISTLYGELV 468
           V    +N   +G  I V I +   ++L G  V
Sbjct: 412 VNFRHENPEVVGHFIDVEIVEAYPNSLRGVPV 443


>gi|15837508|ref|NP_298196.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Xylella
           fastidiosa 9a5c]
 gi|81547885|sp|Q9PEX2|MIAB_XYLFA RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|9105825|gb|AAF83716.1|AE003930_6 conserved hypothetical protein [Xylella fastidiosa 9a5c]
          Length = 497

 Score =  459 bits (1182), Expect = e-127,   Method: Composition-based stats.
 Identities = 198/470 (42%), Positives = 289/470 (61%), Gaps = 22/470 (4%)

Query: 11  AHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNT 69
           AH  +   D+     + F+K++GCQMN YDS +M D+  + +  E  ++ ++AD+I++NT
Sbjct: 34  AHPGNPSHDRPPSRGKLFIKTHGCQMNEYDSAKMADVLTTTEALELTDNPEEADIILINT 93

Query: 70  CHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG 129
           C IREKA EKV+S LGR R LK S    G D+++ V GCVA  EGE I++R+P V++V G
Sbjct: 94  CSIREKAQEKVFSQLGRWRALKTS----GRDVIIGVGGCVASQEGEAIVKRAPYVDLVFG 149

Query: 130 PQTYYRLPELL-ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
           PQT +RLP+++  R    +  VD  +   +KF+ L        R  G +AF++I EGC K
Sbjct: 150 PQTLHRLPDMIRARREQNRPQVDIRFPEIEKFDHLPT-----PRAEGPSAFVSIMEGCSK 204

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK---- 244
           +C+FCVVPYTRG E+SR    V+ E   L   GV EI LLGQNVNA+RG    G      
Sbjct: 205 YCSFCVVPYTRGEEVSRPFEDVLTEIAHLATQGVREINLLGQNVNAYRGAMDPGPSNNTN 264

Query: 245 ------CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
                      L+ ++++ + + R+R+TTSHP + SD L++A+ D+  L  +LHLPVQSG
Sbjct: 265 PAPPPYADLGLLIRAIAQFESIGRIRFTTSHPLEFSDSLVEAYRDVPQLANHLHLPVQSG 324

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           SDRIL +M R +TA E++  I ++R+VRPDI+ISSDFI+GFPGE+D DF+ TM L++ IG
Sbjct: 325 SDRILSAMKRGYTALEFKSKIRKLRAVRPDISISSDFIIGFPGESDTDFQKTMQLIEDIG 384

Query: 359 YAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI 418
           + Q+FSF YS R GTP SN+ +   + +K  RL  LQK +       +   +G +  VL+
Sbjct: 385 FDQSFSFIYSRRPGTPASNLEDHTPDEIKRTRLEHLQKHINTYAADISKRMIGTVQTVLV 444

Query: 419 EKHGKEK-GKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
           E   K+   +L G++  ++ V        IG  I V IT+   ++L G +
Sbjct: 445 EGPSKKNPNELTGKTENMRPVNFPGHPRLIGQFIDVHITEALSNSLRGRV 494


>gi|168186342|ref|ZP_02620977.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Clostridium botulinum C
           str. Eklund]
 gi|169295705|gb|EDS77838.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Clostridium botulinum C
           str. Eklund]
          Length = 447

 Score =  459 bits (1181), Expect = e-127,   Method: Composition-based stats.
 Identities = 167/448 (37%), Positives = 270/448 (60%), Gaps = 15/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +RFF+ ++GCQMN  DS ++  +    GY R +  D+AD+++ NTC +RE A +KVY  L
Sbjct: 11  KRFFISTWGCQMNEEDSEKISGLLKGIGYTRTDIRDEADVVIFNTCCVRENAEQKVYGHL 70

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQA--EGEEILRRSPIVNVVVGPQTYYRLPELLER 142
           G ++ LK        +L+++V GC+ Q     E+++ + P V+++ G    Y+LPE +ER
Sbjct: 71  GELKALKRK----NPNLILIVTGCMMQQKGMPEKVMEKFPHVDIIAGTYNSYKLPEYIER 126

Query: 143 AR-FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
            +  G  +++     +   E L +     +RK  + AF+TI  GC+ FC++C+VPY RG 
Sbjct: 127 VKTEGNSIIEIWDKEKGIVEGLPV-----DRKSDIKAFVTIMYGCNNFCSYCIVPYVRGR 181

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR    ++DE + L+  G  EITLLGQNVN+  GKGL+ E  +F+DLL  +++I GL 
Sbjct: 182 ERSRDPKNIIDEIKDLVSKGYKEITLLGQNVNS-YGKGLEPE-ISFADLLRMVNKIDGLE 239

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+ TSHP+D+SD LI+A  + D +    H  +QSGS  +L+ MNR++T  +Y  ++ +
Sbjct: 240 RIRFMTSHPKDVSDELIEAMAECDKVCEQGHFALQSGSTEVLEKMNRKYTREDYLTLVKK 299

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R   P++ IS+D I+G+PGET+ DF  T+ +V +I +  AF+F YS R GTP + + +Q
Sbjct: 300 LRKTMPNVGISTDIIIGYPGETEKDFEDTLSIVKEIEFDSAFTFIYSKREGTPAAKLEDQ 359

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVL 440
           V E+VK  R   L + + E     N     + +EVL+E   K +  KL+GR+   + V  
Sbjct: 360 VPEDVKHTRFNKLVEAVNEIMARKNKDFEEKTVEVLVEGPSKNDDTKLMGRTRSGKLVNF 419

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
           N     +G ++ ++IT     +L GE++
Sbjct: 420 NGCLDQVGKLVNIKITKANSFSLTGEII 447


>gi|147677673|ref|YP_001211888.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Pelotomaculum
           thermopropionicum SI]
 gi|229890589|sp|A5D2K1|MIAB_PELTS RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|146273770|dbj|BAF59519.1| 2-methylthioadenine synthetase [Pelotomaculum thermopropionicum SI]
          Length = 448

 Score =  459 bits (1181), Expect = e-127,   Method: Composition-based stats.
 Identities = 174/444 (39%), Positives = 263/444 (59%), Gaps = 12/444 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +++ +  +GCQMN +DS  +  +  S GY +  + +D D+I++NTC +R+ A  KV+S L
Sbjct: 2   KKYRIIVFGCQMNEHDSEVLAGILESMGYCQAGNSEDPDIILINTCCVRKTAENKVFSLL 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           GR+R  K        +L++ V GC+ Q EG  E I +  P V+++ G    ++LPEL+ +
Sbjct: 62  GRLRRQKAQ----NPNLIIGVCGCMPQQEGMAERIKQLFPHVDLIFGTHNVHQLPELIGK 117

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
              G++ V   +     +      +    RK GV A++TI  GC+ FCT+C+VPY RG E
Sbjct: 118 VIEGQKQVLEIWP---GYGGELREELPVKRKEGVRAWVTIMYGCNNFCTYCIVPYVRGRE 174

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SRS   V +E  +L   G  E+ LLGQNVN+  GK L G K  F+ LL SL  I G+ R
Sbjct: 175 KSRSPEAVYEEVARLAGEGFKEVILLGQNVNS-YGKDL-GVKTDFASLLESLENIDGIDR 232

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +RY TSHPRD S  L++A      +  + HLPVQ+GS+RILK MNR +T  EY  +I  I
Sbjct: 233 IRYMTSHPRDFSLRLVEAIAASKKVCEHFHLPVQAGSNRILKKMNRGYTREEYVDLIRYI 292

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           +S+ P   +++D +VGFPGETD+DF  T+DLV +I +  A++F Y+ R GTP + M +QV
Sbjct: 293 KSLIPHATVTTDIMVGFPGETDEDFNDTLDLVREIRFDSAYTFVYNIRPGTPAAEMPDQV 352

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKH-GKEKGKLVGRSPWLQSVVLN 441
            ENVK ER+  L K   +  +  N+  VGQ  EVL+E    +  G + GR+   ++V+ +
Sbjct: 353 AENVKKERIQALIKLQNKISLERNEEEVGQTQEVLVEGEKDRGSGFIYGRNRGNKTVIFS 412

Query: 442 SKNHNIGDIIKVRITDVKISTLYG 465
                +G ++ V +T  +++ L G
Sbjct: 413 GDPSLVGKVVPVTVTGARLAHLTG 436


>gi|167763971|ref|ZP_02436098.1| hypothetical protein BACSTE_02354 [Bacteroides stercoris ATCC
           43183]
 gi|167698087|gb|EDS14666.1| hypothetical protein BACSTE_02354 [Bacteroides stercoris ATCC
           43183]
          Length = 455

 Score =  459 bits (1180), Expect = e-127,   Method: Composition-based stats.
 Identities = 166/446 (37%), Positives = 262/446 (58%), Gaps = 10/446 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F+++YGCQMNV DS  +  +    GY   +++++AD + +NTC IR+ A +K+ + L
Sbjct: 18  RKLFIETYGCQMNVADSEVIASVMQMAGYSVADTLEEADAVFMNTCSIRDNAEQKILNRL 77

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
               +LK    K+  +L+V V GC+A+   ++++     V++VVGP  Y  LP+L+    
Sbjct: 78  EFFHSLK----KKKKNLIVGVLGCMAERVKDDLITNH-HVDLVVGPDAYLSLPDLIAAVE 132

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G++ ++ + S  + +  +       N   G   F++I  GC+ FCT+C+VPYTRG E S
Sbjct: 133 AGEKAINVELSTTETYRDVIPSRICGNHISG---FVSIMRGCNNFCTYCIVPYTRGRERS 189

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R +  +++E   L+  G  E+TLLGQNVN++R +  DGE  TF  LL +++E    VR+R
Sbjct: 190 RDVESILNEVADLVAKGYKEVTLLGQNVNSYRFEKADGEVVTFPMLLRTVAESAPGVRIR 249

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +TTSHP+DMSD  ++   ++  +  ++HLPVQSGS RILK MNR++T   Y + +D IR 
Sbjct: 250 FTTSHPKDMSDETLQVIAEVPNVCKHIHLPVQSGSSRILKLMNRKYTREWYLERVDAIRR 309

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN-MLEQVD 383
           +  D  +S+D   GF  ET++D R ++ L+++ GY  AF FKYS R GT  S  + + V 
Sbjct: 310 IISDCGLSTDIFSGFHSETEEDHRLSLSLMEECGYDAAFMFKYSERPGTYASKHLPDDVP 369

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNS 442
           E VK  RL  +           N  C+G+  EVL+E   K    +L GR+   + VV + 
Sbjct: 370 EEVKIRRLNEIIALQNRLSAEANARCMGKTYEVLVEGVSKRSRDQLFGRTEQNRVVVFDR 429

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
             H +GD + V+IT+   +TL GE V
Sbjct: 430 GTHRVGDFVNVKITESSSATLKGEEV 455


>gi|297584113|ref|YP_003699893.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus selenitireducens
           MLS10]
 gi|297142570|gb|ADH99327.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus selenitireducens
           MLS10]
          Length = 516

 Score =  459 bits (1180), Expect = e-127,   Method: Composition-based stats.
 Identities = 173/448 (38%), Positives = 264/448 (58%), Gaps = 15/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++F +++YGCQMN +DS  M  +    G+E   + D+AD+I+LNTC IRE A  KV+  +
Sbjct: 72  KKFLIRTYGCQMNEHDSENMAGILLEMGFESTVNQDEADVILLNTCAIRENAENKVFGEI 131

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G ++ +K    +E   L+V V GC++Q E     IL++   V+++ G    +RLPEL++ 
Sbjct: 132 GNLKVMK----RENPGLIVGVCGCMSQEESVVNRILQKHQHVDLIFGTHNIHRLPELIKN 187

Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           A F K ++   +S E D  E +        RK     ++ I  GCDKFCT+C+VP+TRG 
Sbjct: 188 AIFSKEMIVEVWSQEGDIIENMPRA-----RKGQFQGWVNIMYGCDKFCTYCIVPFTRGK 242

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR    V++E R L  NG  EITLLGQNVNA  GK L       +DLL  + +I G+ 
Sbjct: 243 ERSRRPEDVIEEVRHLARNGYKEITLLGQNVNA-YGKDLLDSSYRLADLLDDIRDI-GIP 300

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHP D  D LI        +M ++HLPVQSG++ +LK MNR++T  EY  + D+
Sbjct: 301 RVRFTTSHPWDFDDELIDVIAKGGNMMEHIHLPVQSGNNDVLKIMNRKYTREEYVALADK 360

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I+   P   +++D IVG+P ET++ F+ T+ LV ++ +  A+++ YS R GTP + M + 
Sbjct: 361 IKEKIPHATLTTDIIVGYPNETEEQFQDTLSLVKEMAFDAAYTYVYSAREGTPAAAMEDD 420

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVL 440
           V + VK +RL  L + +       N+    + +EVL+E   K+    L+GR+   + V  
Sbjct: 421 VPKEVKKDRLQRLNEVVNRHSAMSNERMRDRTVEVLVEGESKKNPDVLMGRTRTNKLVNF 480

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
            +    IG+++ V+ITD K  +L GELV
Sbjct: 481 KAPKSVIGELVYVKITDAKSWSLNGELV 508


>gi|307610039|emb|CBW99573.1| hypothetical protein LPW_13431 [Legionella pneumophila 130b]
          Length = 434

 Score =  459 bits (1180), Expect = e-127,   Method: Composition-based stats.
 Identities = 195/436 (44%), Positives = 275/436 (63%), Gaps = 12/436 (2%)

Query: 36  MNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSR 94
           MN YDS +M ++   S G  + + ++DAD+I+LNTC IREKA EKV+S LG+ R  K   
Sbjct: 1   MNEYDSSKMAEVLYASHGLVKTDQVEDADVILLNTCSIREKAQEKVFSQLGQWREYKAK- 59

Query: 95  IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-ERARFGKRVVDTD 153
                 +L+ V GCVA  EG +I++R+P V++V GPQT +RLP LL ER    K VVD  
Sbjct: 60  ---NPHVLIGVGGCVASQEGSDIIKRAPFVDIVFGPQTLHRLPALLNERLEKNKSVVDIS 116

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           +   +KF+ L        R  G TAF++I EGC K+C+FCVVPYTRG EISR    V+ E
Sbjct: 117 FPEIEKFDHLP-----APRAEGPTAFVSIMEGCSKYCSFCVVPYTRGEEISRPFDDVLAE 171

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
             +L   GV EI LLGQNVN +RG   +G+    + L++ ++ I G+ R+R+TTSHP   
Sbjct: 172 CYQLASQGVREINLLGQNVNDYRGIMDNGDIADLALLIHYIAAIDGIGRIRFTTSHPLAF 231

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
           S+ LI A+ ++  L  +LHLPVQSGSDRIL  M R +TA E++  I ++R +RPDI +S+
Sbjct: 232 SENLINAYAEVPELANHLHLPVQSGSDRILSLMKRGYTALEFKSKIRKLRKIRPDIRLST 291

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLC 393
           D IVGFPGETD DF+ TMDLV +IG+  +FSF YSPR GTP +N+ +     VK +RL  
Sbjct: 292 DIIVGFPGETDKDFQDTMDLVHEIGFDTSFSFIYSPRPGTPAANLPDDTPMEVKKQRLQI 351

Query: 394 LQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLVGRSPWLQSVVLNSKNHNIGDIIK 452
           LQ +L      ++++ +G   ++L+    K+   +L GR+   + V  +   H IG  I 
Sbjct: 352 LQNRLLMNAARYSESMIGSKQKILVTGFSKKSSQQLSGRTECNRVVNFDGPPHLIGQFID 411

Query: 453 VRITDVKISTLYGELV 468
           V+I+D   ++L G L+
Sbjct: 412 VQISDALPNSLRGRLL 427


>gi|312127450|ref|YP_003992324.1| tRNA-i(6)a37 thiotransferase enzyme miab [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311777469|gb|ADQ06955.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 471

 Score =  459 bits (1180), Expect = e-127,   Method: Composition-based stats.
 Identities = 175/447 (39%), Positives = 276/447 (61%), Gaps = 14/447 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +++ + +YGCQMNV+DS ++  M  + GY    ++ +ADLI+ NTC +RE A  +VY  +
Sbjct: 36  KKYHIVTYGCQMNVHDSEKLAGMLNAMGYIETENIQEADLIIFNTCSVREHAESRVYGNI 95

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAE--GEEILRRSPIVNVVVGPQTYYRLPELLER 142
           G ++ LK+       DL++ V GC+ Q     +++ +  P ++++ G ++ ++ P+LL  
Sbjct: 96  GPLKRLKDK----KPDLIIGVCGCMPQQVEVAQKLAKLFPFLDIIFGTKSLHKFPQLLYT 151

Query: 143 ARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           A   K+ V+D     +   E +        RK+GV+AF+ I  GC+ FC++C+VPY RG 
Sbjct: 152 AIMEKKTVIDVSEDEDVVVEGIPTA-----RKQGVSAFVNIIYGCNNFCSYCIVPYVRGR 206

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR   ++V E  +L  NGV E+TLLGQNVN+  GK L G+  TF  LL  ++EIKG+ 
Sbjct: 207 ERSRRPEEIVYEIEQLAQNGVKEVTLLGQNVNS-YGKDL-GDGITFPKLLEKVNEIKGIE 264

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+ TSHP+D+SD LI A  DL+ +  ++HLPVQSGS RILK+MNR +T  +Y ++I++
Sbjct: 265 RIRFVTSHPKDLSDELIVAMRDLEKVCEHIHLPVQSGSTRILKAMNRHYTKEDYLRLIEK 324

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +++  PDIAI++D IVGFPGETD+DF  T+D+  K+ +  A++F YS R GTP   M  Q
Sbjct: 325 LKTNIPDIAITTDIIVGFPGETDEDFEDTLDVCRKVEFDSAYTFIYSKRRGTPAEKMPNQ 384

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           V +++K +R   L K + +  +  N   +G+  EVLI+   K    LVGR+   + V + 
Sbjct: 385 VPDDIKRQRFQRLVKLVEDIALKKNRQMLGKTYEVLIDGQSKRNNLLVGRTRTNKVVNVK 444

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                +   + V+I +     LYGE++
Sbjct: 445 CPEEYMFKFVNVKILEAAEHWLYGEVI 471


>gi|315648053|ref|ZP_07901154.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Paenibacillus
           vortex V453]
 gi|315276699|gb|EFU40042.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Paenibacillus
           vortex V453]
          Length = 519

 Score =  459 bits (1180), Expect = e-127,   Method: Composition-based stats.
 Identities = 175/449 (38%), Positives = 263/449 (58%), Gaps = 14/449 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
             + + V +YGCQMN +DS  ++ +    GY+       AD+I+LNTC IRE A +KV+ 
Sbjct: 72  AGKHYIVYTYGCQMNEHDSETIKGLLEQMGYQATEDRKQADIILLNTCAIRENAEDKVFG 131

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELL 140
            LG +++LK     E  D+L+ V GC++Q E     IL++   V+++ G    +RLP L+
Sbjct: 132 ELGHLKHLK----IEKPDMLLGVCGCMSQEESVVNRILQKHGFVDLIFGTHNVHRLPHLI 187

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           + A F K +V   +S E       I++    ++ G+  ++ I  GCDKFCT+C+VPYTRG
Sbjct: 188 QEALFSKEMVVEVWSKEG-----DIIENLPKKREGLRGWVNIMYGCDKFCTYCIVPYTRG 242

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E SR    V+ E R+L   G  EITLLGQNVNA  GK  +  +  F DL+ ++ +I  +
Sbjct: 243 KERSRRPEDVIAEVRELARQGYKEITLLGQNVNA-YGKDFEDIEYRFGDLMDAIHKID-I 300

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+TTSHPRD  D LI+       L+ ++HLPVQSGS ++LK M+R++T   Y ++  
Sbjct: 301 PRVRFTTSHPRDFDDHLIEVLAKGGNLVEHIHLPVQSGSSQVLKKMSRKYTRETYLELAH 360

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           +I+   P++A ++D IVGFPGETD+ F  T+ LV ++GY  A++F YSPR GTP + M +
Sbjct: 361 KIKKAIPNVAFTTDIIVGFPGETDEQFEETLSLVREVGYDAAYTFIYSPREGTPAAVMED 420

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLVGRSPWLQSVV 439
            V   VK+ERL  L   + E     ND  +G  +EVL+E   K     L GR+   + V 
Sbjct: 421 NVPMEVKSERLQRLNAAISEYSRQSNDRLLGATVEVLVEGVSKNNDSMLSGRTRTNKLVH 480

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  +G  + V+ITD K   + G+++
Sbjct: 481 FEGSRDLVGTFVNVQITDTKTWYIKGDMI 509


>gi|153807123|ref|ZP_01959791.1| hypothetical protein BACCAC_01400 [Bacteroides caccae ATCC 43185]
 gi|149130243|gb|EDM21453.1| hypothetical protein BACCAC_01400 [Bacteroides caccae ATCC 43185]
          Length = 455

 Score =  459 bits (1180), Expect = e-127,   Method: Composition-based stats.
 Identities = 161/446 (36%), Positives = 257/446 (57%), Gaps = 10/446 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F+++YGCQMNV DS  +  +    GY    ++++AD + +NTC IR+ A +K+ + L
Sbjct: 18  KKLFIETYGCQMNVADSEVIASVMQMAGYSVAETLEEADAVFMNTCSIRDNAEQKILNRL 77

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
               +LK  + +    L+V V GC+A+   ++++     V++VVGP  Y  LP+L+    
Sbjct: 78  EFFHSLKKKKKR----LIVGVLGCMAERVKDDLITNH-HVDLVVGPDAYLTLPDLIAAVE 132

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G++ ++ + S  + +  +       N   G   F++I  GC+ FCT+C+VPYTRG E S
Sbjct: 133 AGEKAINVELSTTETYRDVIPSRICGNHISG---FVSIMRGCNNFCTYCIVPYTRGRERS 189

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R +  +++E   L+  G  E+TLLGQNVN++R +   GE  TF  LL +++E    VR+R
Sbjct: 190 RDVESILNEVSDLVAKGYKEVTLLGQNVNSYRFEKPTGEIVTFPMLLRTVAEAAPGVRIR 249

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +TTSHP+DMSD  ++    +  +  ++HLPVQSGS RILK MNR++T   Y   +  I+ 
Sbjct: 250 FTTSHPKDMSDETLEVIAQVPNVCKHIHLPVQSGSSRILKLMNRKYTREWYLDRVAAIKR 309

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN-MLEQVD 383
           + PD  +++D   GF  ET++D   ++ L+++ GY  AF FKYS R GT  S  + + V 
Sbjct: 310 IIPDCGLTTDIFSGFHSETEEDHALSLSLMEECGYDAAFMFKYSERPGTYASKHLEDNVP 369

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNS 442
           E+VK  RL  +           N  C+G+  EVL+E   K    +L GR+   + VV + 
Sbjct: 370 EDVKVRRLNEIIALQNRLSAESNQRCIGKTYEVLVEGVSKRSRDQLFGRTEQNRVVVFDR 429

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
             H +GD + VR+T+   +TL GE V
Sbjct: 430 GTHRVGDFVNVRVTEASSATLKGEEV 455


>gi|299535293|ref|ZP_07048616.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Lysinibacillus
           fusiformis ZC1]
 gi|298729275|gb|EFI69827.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Lysinibacillus
           fusiformis ZC1]
          Length = 517

 Score =  458 bits (1179), Expect = e-127,   Method: Composition-based stats.
 Identities = 171/448 (38%), Positives = 258/448 (57%), Gaps = 15/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + + + +YGCQMN +D+  M  +F   GY     +++AD+++LNTC IRE A  KV+  L
Sbjct: 71  KSYHIMTYGCQMNEHDTEVMAGIFMQLGYTPTEVIEEADVVLLNTCAIRENAENKVFGEL 130

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G +   K        ++L+ V GC++Q E    +ILR  P V++V G    +RLP +L+ 
Sbjct: 131 GFLLKYKRK----NPEMLIGVCGCMSQEESVVNKILRSYPHVDMVFGTHNIHRLPNILKE 186

Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           A   K +V   +S E D  E L        R   + A++ I  GCDKFCT+C+VPYTRG 
Sbjct: 187 AYMSKEMVIEVWSKEGDVIENLP-----KKRLGSIKAWVNIMYGCDKFCTYCIVPYTRGK 241

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR   +++ E R+L   G  EI LLGQNVNA  GK  +       DL+  L +I  + 
Sbjct: 242 ERSRRPEEIIAEVRELAAAGYKEIMLLGQNVNA-YGKDFEDIDYRLGDLMDELRKID-IP 299

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHPRD  D LI+       L+ ++HLPVQSGS+ +LK M R++T   +  ++DR
Sbjct: 300 RIRFTTSHPRDFDDHLIEVLAKRGNLVEHIHLPVQSGSNDVLKIMARKYTREHFLGLVDR 359

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I++  P++ +++D IVG+P ET++ F  T+ L  ++G+  AF++ YSPR GTP + M++ 
Sbjct: 360 IKAAIPEVTLTTDIIVGYPNETEEQFEETLSLYREVGFDAAFTYIYSPREGTPAAKMIDN 419

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVL 440
           V E VK ERL  L + + E      +   GQ++EVL+E   K     L G +   + V  
Sbjct: 420 VPEEVKKERLQRLNEVVGEYSRKALERLNGQVVEVLVEGTSKRRDDVLAGYTRKNRLVNF 479

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
            +    IG ++KV+IT+    +L GE V
Sbjct: 480 KAPAEVIGQLVKVKITETTSYSLTGEFV 507


>gi|226312967|ref|YP_002772861.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Brevibacillus
           brevis NBRC 100599]
 gi|226095915|dbj|BAH44357.1| probable tRNA methylthiotransferase [Brevibacillus brevis NBRC
           100599]
          Length = 503

 Score =  458 bits (1179), Expect = e-127,   Method: Composition-based stats.
 Identities = 176/447 (39%), Positives = 263/447 (58%), Gaps = 13/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +R+ V++YGCQMN +DS  +  +  + GY   +S++DAD+I+ NTC IRE A +KV+  L
Sbjct: 62  KRYHVRTYGCQMNEHDSETISGILQAMGYTSSDSVEDADVILFNTCAIRENAEDKVFGEL 121

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G ++ LKN+      +L++ V GC++Q E   ++IL+    V+++ G    +RLPELL  
Sbjct: 122 GHMKRLKNN----NPNLILGVCGCMSQEEKVVKKILKSYQQVDLIFGTHNIHRLPELLRD 177

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           A F K +V   +S E       + +    R+     ++ I  GCDKFCT+C+VPYTRG E
Sbjct: 178 AMFSKEMVIEVWSKEGDI----VENMPKLREGNTKGWVNIMYGCDKFCTYCIVPYTRGKE 233

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR    V+ E R L   G  EI LLGQNVNA  GK  +  K  F DL+  + +I  + R
Sbjct: 234 RSRRPEDVIAEVRDLARQGFKEIMLLGQNVNA-YGKDFEDIKYGFGDLMDEIRKID-IPR 291

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHPRD  D LI+       L+  +HLPVQSGS  +LK M R+++   Y +++ +I
Sbjct: 292 VRFTTSHPRDFDDHLIEVLAKGGNLVEQIHLPVQSGSTEVLKRMARKYSREHYLELVRKI 351

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           +   P++++S+D IVGFPGETD+ F  T+ +V+++ Y  A++F YSPR GTP + M + V
Sbjct: 352 KDAIPNVSLSTDIIVGFPGETDEQFEDTISMVEEVKYDFAYTFIYSPREGTPAAVMEDNV 411

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVLN 441
              VK  RL  L + L    +  N     Q++EVL+E   +   + L GR+   + V   
Sbjct: 412 PMEVKKARLYRLNEVLAGIALEQNKKLQDQVVEVLVEGESRTNAEVLAGRTRTNKLVHFT 471

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                IG  + ++ITD K  TL+GELV
Sbjct: 472 GDKSLIGQYVHIKITDAKTWTLHGELV 498


>gi|218682221|ref|ZP_03529822.1| putative 2-methylthioadenine synthetase (miaB-like) protein
           [Rhizobium etli CIAT 894]
          Length = 394

 Score =  458 bits (1179), Expect = e-127,   Method: Composition-based stats.
 Identities = 250/386 (64%), Positives = 299/386 (77%)

Query: 12  HMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCH 71
                 +      ++ F+K+YGCQMNVYDS RM D     GYE    M++ADL++LNTCH
Sbjct: 9   QAPEPTLRDGSNSRKVFIKTYGCQMNVYDSTRMSDALARDGYEPTEDMEEADLVLLNTCH 68

Query: 72  IREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ 131
           IREKAAEKVYS LGR+R +K  +  +G ++++ VAGCVAQAEGEEILRR+P V+VV+GPQ
Sbjct: 69  IREKAAEKVYSALGRLREMKKKKAADGREMMIGVAGCVAQAEGEEILRRAPAVDVVIGPQ 128

Query: 132 TYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCT 191
           TY+RLPE L +A+ G+RVVDT+Y++EDKFE L I +    R RGVTAFLT+QEGCDKFCT
Sbjct: 129 TYHRLPEALRQAKQGRRVVDTEYAIEDKFEHLPIAESRKIRARGVTAFLTVQEGCDKFCT 188

Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLL 251
           FCVVPYTRG E+SR +SQ+V+EA KL++ GV EITLLGQNVNAW G G  GE  +  DLL
Sbjct: 189 FCVVPYTRGSEVSRPVSQIVEEAEKLVEGGVREITLLGQNVNAWHGAGSGGEAWSLGDLL 248

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
           Y L+EI GL RLRYTTSHPRDM D LI+AH DL  LMPYLHLPVQSGSDRILK+MNRRHT
Sbjct: 249 YRLAEIPGLARLRYTTSHPRDMDDRLIEAHRDLRALMPYLHLPVQSGSDRILKAMNRRHT 308

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
           A EY  +I RIR+VRPDIA+S DFI GFPGETD DF  T+ LV ++ YAQAFSFKYS R 
Sbjct: 309 AAEYLSLIARIRAVRPDIALSGDFITGFPGETDADFEDTLRLVAEVRYAQAFSFKYSTRP 368

Query: 372 GTPGSNMLEQVDENVKAERLLCLQKK 397
           GTPG+ + +QV E +KAERL  LQ  
Sbjct: 369 GTPGAELKDQVPEEIKAERLERLQAL 394


>gi|255011954|ref|ZP_05284080.1| SAM/TRAM family methylase protein [Bacteroides fragilis 3_1_12]
 gi|313149788|ref|ZP_07811981.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313138555|gb|EFR55915.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 457

 Score =  458 bits (1179), Expect = e-127,   Method: Composition-based stats.
 Identities = 165/446 (36%), Positives = 255/446 (57%), Gaps = 10/446 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F+++YGCQMNV DS  +  +    GY    ++++AD + +NTC IR+ A +K+ + L
Sbjct: 18  KKLFIETYGCQMNVADSEVIASVMQMAGYSVAETLEEADAVFMNTCSIRDNAEQKILNRL 77

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
               ++K    K+   L+V V GC+A+   ++++     V++VVGP  Y  LPEL+    
Sbjct: 78  EFFHSMK----KKKKHLIVGVLGCMAERVKDDLI-EHHHVDLVVGPDAYLTLPELIASVE 132

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G++ ++ + S  + +  +       N   G   F++I  GC+ FCT+C+VPYTRG E S
Sbjct: 133 AGEKAMNVELSTTETYRDVIPSRICGNHISG---FVSIMRGCNNFCTYCIVPYTRGRERS 189

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R +  +++E   L+  G  EITLLGQNVN++R +   GE  TF  LL  ++E    VR+R
Sbjct: 190 RDVESILNEVADLVSKGYKEITLLGQNVNSYRFEKEGGEVVTFPMLLRVVAEAAPDVRVR 249

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +TTSHP+DMSD  ++    +  +  ++HLPVQSGS RILK MNR++T   Y   +  I+ 
Sbjct: 250 FTTSHPKDMSDETLEVIAQVPNVCKHIHLPVQSGSSRILKLMNRKYTREWYLDRVSAIKR 309

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN-MLEQVD 383
           + PD  +++D   GF  ET++D + ++ L++  GY  AF FKYS R GT  S  + + V 
Sbjct: 310 IVPDCGLTTDIFSGFHSETEEDHQESLSLMEACGYDAAFMFKYSERPGTYASKHLEDNVP 369

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNS 442
           E VK  RL  +           N  C+G+  EVL+E   K    +L GR+   + VV + 
Sbjct: 370 EEVKVRRLNEIIALQNRLSAESNTRCIGKTYEVLVEGVSKRSRDQLFGRTEQNRVVVFDR 429

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
             H IGD + VRIT+   +TL GE V
Sbjct: 430 GTHRIGDFVNVRITEASSATLKGEEV 455


>gi|312793678|ref|YP_004026601.1| tRNA-i(6)a37 thiotransferase enzyme miab [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312180818|gb|ADQ40988.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 471

 Score =  458 bits (1179), Expect = e-127,   Method: Composition-based stats.
 Identities = 172/447 (38%), Positives = 276/447 (61%), Gaps = 14/447 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +++ + +YGCQMNV+DS ++  M  + GY    ++ +ADLI+ NTC +RE A  +VY  +
Sbjct: 36  KKYHIVTYGCQMNVHDSEKLAGMLNAMGYIETENIQEADLIIFNTCSVREHAESRVYGNI 95

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAE--GEEILRRSPIVNVVVGPQTYYRLPELLER 142
           G ++ LK+       DL++ V GC+ Q     +++ +  P ++++ G ++ ++ P+LL  
Sbjct: 96  GPLKRLKDK----KPDLIIGVCGCMPQQVEVAQKLAKLFPFLDIIFGTKSLHKFPQLLYT 151

Query: 143 ARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           A   K+ V+D     +   E +        R++GV+AF+ I  GC+ FC++C+VPY RG 
Sbjct: 152 AITEKKTVIDVSEDEDVVVEGIPTA-----RRQGVSAFVNIIYGCNNFCSYCIVPYVRGR 206

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR   +++ E  +L  NGV E+TLLGQNVN+  GK L G   TF  LL  ++EI+G+ 
Sbjct: 207 ERSRRPEEIIYEIEQLAQNGVKEVTLLGQNVNS-YGKDL-GNGITFPKLLEKVNEIEGIE 264

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+ TSHP+D+SD LI A  DL+ +  ++HLPVQSGS RILK+MNR +T  +Y +++++
Sbjct: 265 RIRFVTSHPKDLSDELIVAMRDLEKVCEHIHLPVQSGSTRILKAMNRHYTKEDYLRLVEK 324

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +++  PDIAI++D IVGFPGETD+DF  T+D+  K+ +  A++F YS R GTP   M  Q
Sbjct: 325 LKTNIPDIAITTDIIVGFPGETDEDFEDTLDVCRKVEFDSAYTFIYSKRRGTPAEKMPNQ 384

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           V +++K +R   L K + E  +  N   +G+  E+LI+ H K    LVGR+   + V + 
Sbjct: 385 VPDDIKHQRFQRLVKLVEEIALKKNRQMLGKTYEILIDGHSKRNNLLVGRTRTNKVVNVK 444

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                +   + V+I +     LYGE++
Sbjct: 445 CPEEYMFKFVNVKILEAAEHWLYGEVI 471


>gi|258511464|ref|YP_003184898.1| RNA modification enzyme, MiaB family [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257478190|gb|ACV58509.1| RNA modification enzyme, MiaB family [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 497

 Score =  458 bits (1178), Expect = e-126,   Method: Composition-based stats.
 Identities = 166/447 (37%), Positives = 264/447 (59%), Gaps = 14/447 (3%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P RF +++YGCQMN +D+  M  +  + GYE  +  ++AD I+ NTC +RE A EKV+  
Sbjct: 54  PYRFLIRTYGCQMNEHDTEVMAGLLTAMGYEPTHDAEEADFILFNTCAVRENAEEKVFGE 113

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEE--ILRRSPIVNVVVGPQTYYRLPELLE 141
           +GR+R LK    ++  +L+  + GC+AQ +G +  +  + P +++V G    +RLP LL 
Sbjct: 114 IGRLRPLK----RQNPELIFGLCGCMAQEKGVQRMVREKYPWIDLVFGTHNIHRLPALLF 169

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
            AR  +  V   +    +    ++ D    RK  V A++ +Q GC+KFCT+C+VPYTRG+
Sbjct: 170 AARASQETVMEVWDNAPE----TVEDWPKLRKDRVRAWVNVQYGCNKFCTYCIVPYTRGV 225

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR    V+ E  +L+  G  +ITLLGQNVN +   G+D     F+ LL  ++ + G+ 
Sbjct: 226 ERSRLPEDVLREVAELVQEGYQDITLLGQNVNDY---GVDLGTTNFARLLRQVNAVPGVG 282

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
            +R+TTS+P + +D LI A  + + ++ ++HLPVQSG++ IL+ MNR HT   Y +++D+
Sbjct: 283 WIRFTTSNPWNFTDELIDAIAESENVVEHIHLPVQSGNNEILRRMNRSHTREYYLRLVDK 342

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           IRS  P ++I++D IVGFPGET+  F+ T+ LV ++ +  AF+F YSPR  TP +   + 
Sbjct: 343 IRSRIPGVSITTDLIVGFPGETEAHFQDTLRLVREVEFDNAFTFIYSPRENTPAARWNDD 402

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVL 440
                K ERL+ L +   E     N+   G ++EVL++   K     L GR+   + V+ 
Sbjct: 403 TPLEEKKERLMRLNEVQNEISRRHNEKLRGTLLEVLVDGESKTNPDVLSGRTRTNKLVLF 462

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGEL 467
                 IG  I+VR+T+ +   L GE+
Sbjct: 463 RGDKSLIGQRIRVRVTEPQTFLLKGEI 489


>gi|262374162|ref|ZP_06067439.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Acinetobacter junii
           SH205]
 gi|262311173|gb|EEY92260.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Acinetobacter junii
           SH205]
          Length = 483

 Score =  458 bits (1178), Expect = e-126,   Method: Composition-based stats.
 Identities = 196/471 (41%), Positives = 291/471 (61%), Gaps = 22/471 (4%)

Query: 9   GVAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVL 67
                 +   D  +  ++ ++++ GCQMN YDS RM D+   S GY    + ++AD++++
Sbjct: 17  NTVTQPTHTTDVSM--KKLYIETQGCQMNEYDSHRMADLLGDSHGYVLTTNPNEADILLM 74

Query: 68  NTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVV 127
           NTC IREKA EKV+S LGR R LK        DL++ V GCVA  EG+ I +R+P V++V
Sbjct: 75  NTCSIREKAQEKVFSELGRWRKLKEQ----NPDLVIGVGGCVASQEGDNIQKRAPYVDMV 130

Query: 128 VGPQTYYRLPELLERA--------RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAF 179
            GPQT +RLP++L++         +   ++VD  +   +KF+ L        R  G  AF
Sbjct: 131 FGPQTLHRLPQMLDQHQAQVEKPKKEKIKLVDISFPDIEKFDFLP-----EPRVEGFKAF 185

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
           ++I EGC K+C+FCVVPYTRG E+SR L  V+ E   L + GV EI+LLGQNVN +RG+ 
Sbjct: 186 VSIMEGCSKYCSFCVVPYTRGEEVSRPLDDVLAEIAGLAEKGVREISLLGQNVNGYRGET 245

Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
            +G  CTF +LL  ++EI G+ RLRYTTSHP + SD LI+ + DL  ++ +LHLPVQSGS
Sbjct: 246 FEGGICTFPELLRLVAEIPGIGRLRYTTSHPLEFSDELIQCYRDLPQMVSHLHLPVQSGS 305

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
           + +L++M R HT   Y   I ++R VRPD+ +SSDFI+GFPGETD+ F  T+  +  + +
Sbjct: 306 NDVLQAMKRNHTIDVYIDKIAKLRKVRPDMHLSSDFIIGFPGETDEHFAETLQFIKDLDF 365

Query: 360 AQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419
             ++SF YS R GTP S + +   E VK +RL  +Q+ +++  +   DA +G+I  VLIE
Sbjct: 366 DHSYSFVYSKRPGTPASELPDDTPEQVKKDRLAQVQQVIKQSSIDKTDAMLGKIERVLIE 425

Query: 420 KHG-KEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKI-STLYGELV 468
           K   K+   L+G +   + V        +G   ++ IT++K  + +YGEL+
Sbjct: 426 KVSDKDPNLLIGTADNTRLVTFIGDAAWVGRFAEIEITEIKTLNLVYGELL 476


>gi|169632399|ref|YP_001706135.1| putative tRNA-i(6)A37 modification enzyme (MiaB) [Acinetobacter
           baumannii SDF]
 gi|229890410|sp|B0VQX2|MIAB_ACIBS RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|169151191|emb|CAO99868.1| putative tRNA-i(6)A37 modification enzyme (MiaB) [Acinetobacter
           baumannii]
          Length = 483

 Score =  458 bits (1178), Expect = e-126,   Method: Composition-based stats.
 Identities = 199/471 (42%), Positives = 295/471 (62%), Gaps = 22/471 (4%)

Query: 9   GVAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVL 67
                 +   D  I  ++ ++++ GCQMN YDS RM D+   S GY   N+ ++AD++++
Sbjct: 17  NTVTQPTHTTDVSI--KKLYIETQGCQMNEYDSHRMADLLGDSHGYVLTNNPNEADILLM 74

Query: 68  NTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVV 127
           NTC IREKA EKV+S LGR R LK        DL++ V GCVA  EG+ I +R+P V+++
Sbjct: 75  NTCSIREKAQEKVFSELGRWRKLKEQ----NPDLVIGVGGCVASQEGDNIQKRAPYVDMI 130

Query: 128 VGPQTYYRLPELLERA--------RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAF 179
            GPQT +RLP++L++         +   ++VD  +   +KF+ L        R  G  AF
Sbjct: 131 FGPQTLHRLPQMLDQHHAQVEKPKKEKIKLVDISFPDIEKFDFLP-----EPRVEGFKAF 185

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
           ++I EGC K+C+FCVVPYTRG E+SR L  V+ E   L + GV EI+LLGQNVN +RG+ 
Sbjct: 186 VSIMEGCSKYCSFCVVPYTRGEEVSRPLDDVLAEIAGLAEKGVREISLLGQNVNGYRGET 245

Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
            +G  CTF +LL  ++EI G+ RLRYTTSHP + SD LI+ + DL  ++ +LHLPVQSGS
Sbjct: 246 FEGGICTFPELLRLVAEIPGIGRLRYTTSHPLEFSDELIQCYEDLPQMVSHLHLPVQSGS 305

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
           + +LK+M R HT   Y   I ++R +RPD+ +SSDFI+GFPGETD++F  T+  +  +G+
Sbjct: 306 NDVLKAMKRNHTIDVYIDKIAKLRKIRPDMHLSSDFIIGFPGETDENFAETLQFIKDLGF 365

Query: 360 AQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419
             ++SF YS R GTP S++ +   E+VK ERL  +Q+ +++  +   DA +G+I  VLIE
Sbjct: 366 DHSYSFVYSKRPGTPASDLPDTTPEHVKKERLAQVQQVIKQSSIEKTDAMLGKIERVLIE 425

Query: 420 KHGK-EKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKI-STLYGELV 468
           K    +   LVG +   + V        +G   ++ IT++K  + +YGEL+
Sbjct: 426 KVSDQDPNILVGTADNTRLVTFVGDASRVGRFAEIEITEIKTLNLVYGELL 476


>gi|327439595|dbj|BAK15960.1| 2-methylthioadenine synthetase [Solibacillus silvestris StLB046]
          Length = 511

 Score =  458 bits (1178), Expect = e-126,   Method: Composition-based stats.
 Identities = 171/448 (38%), Positives = 258/448 (57%), Gaps = 15/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++F++++YGCQMN +D+  M  +F   GY     +++AD+++LNTC IRE A  KV+  L
Sbjct: 64  RKFYIRTYGCQMNEHDTEVMAGIFMQLGYTPTEMIEEADVVLLNTCAIRENAENKVFGEL 123

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G +   K        ++L+ V GC++Q E    +IL++   V++V G    +RLP +L  
Sbjct: 124 GFLLKYKRK----NPEMLIGVCGCMSQEESVVNKILKQYQHVDMVFGTHNIHRLPNILHD 179

Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           A   K +V   +S E D  E L        R   + A++ I  GCDKFCT+C+VPYTRG 
Sbjct: 180 AYMSKEMVVEVWSKEGDVIENLP-----KKRIGSIKAWVNIMYGCDKFCTYCIVPYTRGK 234

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR   +++ E R+L   G  EI LLGQNVNA  GK  D  +    DL+  L +I  + 
Sbjct: 235 ERSRRPEEIIQEVRELAAQGYKEIMLLGQNVNA-YGKDFDDIEYRLGDLMDELRKID-IP 292

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHPRD  D LIK       L+ ++HLPVQSGS+ ILK M R++T   + Q++D+
Sbjct: 293 RIRFTTSHPRDFDDHLIKVLAKGGNLVDHIHLPVQSGSNEILKIMARKYTREHFLQLVDK 352

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I++  P + +++D IVG+P ET++ F+ T+DL  ++G+  AF++ YSPR GTP + M++ 
Sbjct: 353 IKAAIPGVTLTTDIIVGYPNETEEQFQETLDLYRQVGFDMAFTYIYSPREGTPAAKMVDN 412

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVL 440
           V E  K +RL  L   + E          GQ +EVL+E   K     L G +   + V  
Sbjct: 413 VTEEEKKDRLHRLNAVVSEYSAKALKGLEGQTVEVLVEGSSKRRDDVLAGYTRKNRLVNF 472

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
            +    IG ++ V+I + K  +L GE V
Sbjct: 473 KADPKFIGKLVNVKILEAKSYSLMGEFV 500


>gi|319900623|ref|YP_004160351.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacteroides helcogenes P
           36-108]
 gi|319415654|gb|ADV42765.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacteroides helcogenes P
           36-108]
          Length = 459

 Score =  458 bits (1178), Expect = e-126,   Method: Composition-based stats.
 Identities = 169/446 (37%), Positives = 259/446 (58%), Gaps = 10/446 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F+++YGCQMNV DS  +  +    GY    ++++AD + +NTC IR+ A +K+ + L
Sbjct: 18  KKLFIETYGCQMNVADSEVIASVMQMAGYSVAETLEEADAVFMNTCSIRDNAEQKILNRL 77

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
               +LK    K+   L+V V GC+A+   ++++     V++VVGP  Y  LPEL+    
Sbjct: 78  EFFHSLK----KKKRHLIVGVLGCMAERVKDDLITNH-HVDLVVGPDAYLTLPELIASVE 132

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G++ ++ + S  + +  +       N   G   F++I  GC+ FCT+C+VPYTRG E S
Sbjct: 133 AGEKAMNVELSTTETYRDVIPSRICGNHISG---FVSIMRGCNNFCTYCIVPYTRGRERS 189

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R +  +++E   L+  G  E+TLLGQNVN++R +  DG   TF  LL  ++E    VR+R
Sbjct: 190 RDVESILNEVADLVAKGYKEVTLLGQNVNSYRFEKPDGGVVTFPILLRMVAEAAQGVRIR 249

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +TTSHP+DMSD  ++   D+  +  ++HLPVQSGS RILK MNRR+T   Y + +  IR 
Sbjct: 250 FTTSHPKDMSDETLQVIADMPNVCKHIHLPVQSGSSRILKLMNRRYTREWYLERVAAIRR 309

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN-MLEQVD 383
           + PD  +S+D   GF  ET++D + ++ L+++ GY  AF FKYS R GT  S  + + V 
Sbjct: 310 IIPDCGLSTDIFSGFHSETEEDHQLSLSLMEECGYDAAFMFKYSERPGTYASKHLPDDVP 369

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNS 442
           E VK  RL  +           N  CVG++ EVL+E   K    +L GR+   + VV + 
Sbjct: 370 EEVKIRRLNEIIALQNRLSAEANARCVGRMYEVLVEGVSKRSRNQLFGRTEQNRVVVFDR 429

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
             H IGD + VR+T+   +TL GE V
Sbjct: 430 GTHRIGDFVTVRVTESSSATLKGEEV 455


>gi|312875820|ref|ZP_07735810.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311797301|gb|EFR13640.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Caldicellulosiruptor
           lactoaceticus 6A]
          Length = 471

 Score =  458 bits (1178), Expect = e-126,   Method: Composition-based stats.
 Identities = 172/447 (38%), Positives = 275/447 (61%), Gaps = 14/447 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +++ + +YGCQMNV+DS ++  M  + GY    ++ +ADLI+ NTC +RE A  +VY  +
Sbjct: 36  KKYHIVTYGCQMNVHDSEKLAGMLNAMGYIETENIQEADLIIFNTCSVREHAESRVYGNI 95

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAE--GEEILRRSPIVNVVVGPQTYYRLPELLER 142
           G ++ LK+       DL++ V GC+ Q     +++ +  P ++++ G ++ ++ P+LL  
Sbjct: 96  GPLKRLKDK----KPDLIIGVCGCMPQQVEVAQKLAKLFPFLDIIFGTKSLHKFPQLLYT 151

Query: 143 ARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           A   K+ V+D     +   E +        R++GV+AF+ I  GC+ FC++C+VPY RG 
Sbjct: 152 AITEKKTVIDVSEDEDVVVEGIPTA-----RRQGVSAFVNIIYGCNNFCSYCIVPYVRGR 206

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR   +++ E  +L  NGV E+TLLGQNVN+  GK L G   TF  LL  ++EIKG+ 
Sbjct: 207 ERSRRPEEIIYEIEQLAQNGVKEVTLLGQNVNS-YGKDL-GNGITFPKLLEKVNEIKGIE 264

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+ TSHP+D+SD LI A  DL+ +  ++HLPVQSGS RILK+MNR +T  +Y +++++
Sbjct: 265 RIRFVTSHPKDLSDELIVAMRDLEKVCEHIHLPVQSGSTRILKAMNRHYTKEDYLRLVEK 324

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +++  PDIAI++D IVGFPGETD+DF  T+D+  K+ +  A++F YS R GTP   M  Q
Sbjct: 325 LKTNIPDIAITTDIIVGFPGETDEDFEDTLDVCRKVEFDSAYTFIYSKRRGTPAEKMPNQ 384

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           V +++K +R   L K + E  +  N   +G+  E+LI+   K    LVGR+   + V + 
Sbjct: 385 VPDDIKHQRFQQLVKLIEEIALKKNRQMLGKTYEILIDGRSKRNNLLVGRTRTNKVVNVK 444

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                +   + V+I +     LYGE++
Sbjct: 445 CPEEFMFKFVNVKILEAAEHWLYGEVI 471


>gi|53711319|ref|YP_097311.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacteroides
           fragilis YCH46]
 gi|60679624|ref|YP_209768.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacteroides
           fragilis NCTC 9343]
 gi|253564573|ref|ZP_04842030.1| SAM/TRAM family methylase [Bacteroides sp. 3_2_5]
 gi|265764766|ref|ZP_06093041.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacteroides sp. 2_1_16]
 gi|81317302|sp|Q5LJ70|MIAB_BACFN RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|81384036|sp|Q650P7|MIAB_BACFR RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|52214184|dbj|BAD46777.1| conserved hypothetical protein [Bacteroides fragilis YCH46]
 gi|60491058|emb|CAH05806.1| putative SAM/TRAM family methylase protein [Bacteroides fragilis
           NCTC 9343]
 gi|251948349|gb|EES88631.1| SAM/TRAM family methylase [Bacteroides sp. 3_2_5]
 gi|263254150|gb|EEZ25584.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacteroides sp. 2_1_16]
 gi|301161106|emb|CBW20643.1| putative SAM/TRAM family methylase protein [Bacteroides fragilis
           638R]
          Length = 457

 Score =  458 bits (1178), Expect = e-126,   Method: Composition-based stats.
 Identities = 164/446 (36%), Positives = 256/446 (57%), Gaps = 10/446 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F+++YGCQMNV DS  +  +    GY    ++++AD + +NTC IR+ A +K+ + L
Sbjct: 18  KKLFIETYGCQMNVADSEVIASVMQMAGYSVAETLEEADAVFMNTCSIRDNAEQKILNRL 77

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
               ++K    K+   L+V V GC+A+   ++++     V++VVGP  Y  LPEL+    
Sbjct: 78  EFFHSMK----KKKKHLIVGVLGCMAERVKDDLI-EHHHVDLVVGPDAYLTLPELIASVE 132

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G++ ++ + S  + +  +       N   G   F++I  GC+ FCT+C+VPYTRG E S
Sbjct: 133 AGEKAMNVELSTTETYRDVIPSRICGNHISG---FVSIMRGCNNFCTYCIVPYTRGRERS 189

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R +  +++E   L+  G  EITLLGQNVN++R +   GE  TF  LL  ++E    +R+R
Sbjct: 190 RDVESILNEVADLVSKGYKEITLLGQNVNSYRFEKEGGEVVTFPMLLRLVAEAAPGIRVR 249

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +TTSHP+DMSD  ++    +  +  ++HLPVQSGS RILK MNR++T   Y   +  I+ 
Sbjct: 250 FTTSHPKDMSDETLEVIAQVPNVCKHIHLPVQSGSSRILKLMNRKYTREWYLDRVAAIKR 309

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN-MLEQVD 383
           + PD  +++D   GF  ET++D R ++ L++  GY  AF FKYS R GT  S  + + V 
Sbjct: 310 IVPDCGLTTDIFSGFHSETEEDHRESLSLMEACGYDAAFMFKYSERPGTYASKHLEDNVP 369

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNS 442
           E +K  RL  +           N+ C+G+  EVL+E   K    +L GR+   + VV + 
Sbjct: 370 EEIKVRRLNEIIALQNRLSAESNNRCIGKTYEVLVEGVSKRSRDQLFGRTEQNRVVVFDR 429

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
             H IGD + VRIT+   +TL GE V
Sbjct: 430 GTHRIGDFVNVRITEASSATLKGEEV 455


>gi|220929121|ref|YP_002506030.1| RNA modification enzyme, MiaB family [Clostridium cellulolyticum
           H10]
 gi|219999449|gb|ACL76050.1| RNA modification enzyme, MiaB family [Clostridium cellulolyticum
           H10]
          Length = 478

 Score =  458 bits (1178), Expect = e-126,   Method: Composition-based stats.
 Identities = 174/448 (38%), Positives = 270/448 (60%), Gaps = 15/448 (3%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P R+ ++++GCQMN  DS R+  M    GY   +   D+DLI+ NTC +RE A +KVY  
Sbjct: 40  PVRYIIETFGCQMNENDSERLSGMLSGMGYSECSERKDSDLIIFNTCCVRENAEQKVYGH 99

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLE 141
           LG ++ LK        +L++ + GC+ Q +   E I +    V++V G    Y+ PELL 
Sbjct: 100 LGALKKLKE----TNPNLIIAICGCMMQQKDVVEHIKKTYKHVDIVFGTHNLYKFPELLN 155

Query: 142 RARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
            A   +  V+D   S     E + I     +RK  + A++T+  GC+ FC++C+VPY RG
Sbjct: 156 TAITTRSTVIDVWDSTGSIAENMPI-----SRKENIKAWVTVMYGCNNFCSYCIVPYVRG 210

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E SRSL ++ +E  KL  +G  EITLLGQNVN+  GK L+G+  TF+ LL  L++++G+
Sbjct: 211 RERSRSLEEIKNEVEKLAKDGCKEITLLGQNVNS-YGKDLEGD-LTFAGLLRELNKVQGI 268

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+ TSHP+D+SD LI A  D + +  +LHLPVQ+GS +IL  MNRR++  +Y  +I+
Sbjct: 269 ERIRFMTSHPKDLSDELIYAMRDCEKVCEHLHLPVQAGSSKILDEMNRRYSKEQYLGLIE 328

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           +++S  P IA+++D IVGFPGET++DF  T+D+V K  +  A++F YS R GTP +   E
Sbjct: 329 KVKSNIPGIALTTDIIVGFPGETEEDFNETLDVVAKARFDMAYTFLYSKRTGTPAAKNPE 388

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVV 439
           Q+ E VK +R   L +   +     ND  +G+ +EVL+E   K  K    GR+   + V 
Sbjct: 389 QIPETVKKQRFDRLLELQNKISKEINDGLLGKELEVLVEGLSKSSKTTYTGRTRENKIVN 448

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGEL 467
                  +G ++KV+I +++  +L G++
Sbjct: 449 FKGSPDMVGKLVKVKIEEIQTWSLLGKI 476


>gi|75760978|ref|ZP_00740984.1| tRNA 2-methylthioadenosine synthase [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|74491542|gb|EAO54752.1| tRNA 2-methylthioadenosine synthase [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
          Length = 515

 Score =  457 bits (1177), Expect = e-126,   Method: Composition-based stats.
 Identities = 179/447 (40%), Positives = 266/447 (59%), Gaps = 15/447 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
             ++F++++YGCQMN +D+  M  +F + GYE   S +DAD+++LNTC IRE A  KV+ 
Sbjct: 79  TGRKFYIRTYGCQMNEHDTEVMAGIFTTLGYEPTFSTEDADVVLLNTCAIRENAENKVFG 138

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELL 140
            LG +++LK    +   DLL+ V GC++Q E    +I++++  V++V G    +RLP +L
Sbjct: 139 ELGHLKSLK----RRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYIL 194

Query: 141 ERARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           + A F K  V   +S E D  E L  V     R+  + A++ I  GCDKFCT+C+VPYTR
Sbjct: 195 KDAMFSKETVVEVWSKEGDVIENLPKV-----RRGDIKAWVNIMYGCDKFCTYCIVPYTR 249

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G E SR    ++ E R L  NG  EITLLGQNVNA  GK  +  +    DL+  L ++  
Sbjct: 250 GKERSRRPEDIIQEIRHLAANGYKEITLLGQNVNA-YGKDFEDVEYGLGDLMDELRKVD- 307

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           + R+R+TTSHPRD  D LI+  G    L+ ++HLPVQSGS  +LK M R+++   Y +++
Sbjct: 308 IARIRFTTSHPRDFDDHLIEVLGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELV 367

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            +I+   PD  +++D IVGFP ETD+ F  TM L  ++G+  AF+F YSPR GTP + M 
Sbjct: 368 RKIKEAIPDAVLTTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMK 427

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSV 438
           + V   VK ERL  L   +    +  N    GQI+EVL++   K   + L G +   + V
Sbjct: 428 DNVPMEVKKERLQRLNTLVNTLAIEKNSRYKGQIVEVLVDGESKNNPEVLAGYTRTNKLV 487

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYG 465
              +    IG ++KV++T+ K+  L G
Sbjct: 488 NFVASKSLIGQLVKVKVTEAKLGLLTG 514


>gi|15605821|ref|NP_213198.1| hypothetical protein aq_284 [Aquifex aeolicus VF5]
 gi|6226354|sp|O66638|MIAB_AQUAE RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|2982992|gb|AAC06605.1| hypothetical protein aq_284 [Aquifex aeolicus VF5]
          Length = 440

 Score =  457 bits (1177), Expect = e-126,   Method: Composition-based stats.
 Identities = 176/446 (39%), Positives = 282/446 (63%), Gaps = 10/446 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + ++FF+K++GCQMN  DS R+  +  + GYE+ ++ ++ADLI+LNTC IREK  +KV S
Sbjct: 1   MSKKFFIKTFGCQMNFNDSERIRGLLKTIGYEQTDNWEEADLIILNTCTIREKPDQKVLS 60

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            LG  + +K          L+ VAGC+AQ  G E+++++P+++++      ++LPEL+ +
Sbjct: 61  HLGEYKKIKEK----NPKALIAVAGCLAQRTGWELVKKAPVIDIMFSSFNMHQLPELINQ 116

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           A+ G + +      E   +   I +    R     A++TI +GCDK CT+CVVP TRG E
Sbjct: 117 AQAGYKAIAI--LDELPQDEDKIWEYPVERDNKYCAYVTIIKGCDKNCTYCVVPRTRGKE 174

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR+L  ++DE ++L+D+GV EI LLGQNV AW GK  + +   FS+LLY +S+I G+ R
Sbjct: 175 RSRALHSILDEVKRLVDDGVREIHLLGQNVTAW-GKDFE-KPIPFSELLYQVSKIDGVER 232

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TT HPRD++D +I+A  D+  +   LHLP Q+GS+RIL  M+R +T  EY + I+++
Sbjct: 233 IRFTTGHPRDLTDDIIEAMADIPQVCNALHLPFQAGSNRILALMDRGYTKEEYLEKIEKL 292

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           +    DIA+S+D IVGFP ET++DF  T+D++ K+ + Q FSFK+SPR GTP + M  Q+
Sbjct: 293 KEKVKDIAMSTDVIVGFPTETEEDFEHTLDVLKKVRFEQVFSFKFSPRPGTPAAEMEGQI 352

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
            ++VK ER+  L +  +           G + EVL+E+  ++ G+L+GR+   +      
Sbjct: 353 PDDVKTERMRRLLELQKSILSEIAKKYEGTVQEVLVEE--EKNGELIGRTTTNKWASFKG 410

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
               +G I+K+++      +L GEL+
Sbjct: 411 DPSLLGKIVKIKVIKSSPFSLEGELL 436


>gi|312135300|ref|YP_004002638.1| tRNA-i(6)a37 thiotransferase enzyme miab [Caldicellulosiruptor
           owensensis OL]
 gi|311775351|gb|ADQ04838.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Caldicellulosiruptor
           owensensis OL]
          Length = 471

 Score =  457 bits (1177), Expect = e-126,   Method: Composition-based stats.
 Identities = 171/447 (38%), Positives = 276/447 (61%), Gaps = 14/447 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +++ + +YGCQMNV+DS ++  M  + GY    ++ +ADLI+ NTC +RE A  +VY  +
Sbjct: 36  KKYHIVTYGCQMNVHDSEKLAGMLNAMGYIETENIQEADLIIFNTCSVREHAESRVYGNI 95

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQA--EGEEILRRSPIVNVVVGPQTYYRLPELLER 142
           G ++ LK+       DL++ V GC+ Q     +++ +  P ++++ G ++ ++ P+LL  
Sbjct: 96  GPLKRLKDK----KPDLIIGVCGCMPQQLEVAQKLAKLFPFLDIIFGTKSLHKFPQLLYT 151

Query: 143 ARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           A   KR V+D   + +   E +        RK+GV+AF+ I  GC+ FC++C+VPY RG 
Sbjct: 152 AITEKRTVIDVSENEDVVVEGIPTA-----RKQGVSAFVNIIYGCNNFCSYCIVPYVRGR 206

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR   +++ E  +L  NGV E+TLLGQNVN++    ++G   TF  LL  ++EIKG+ 
Sbjct: 207 ERSRRPEEIIYEIEQLAQNGVKEVTLLGQNVNSYGKDLVNG--ITFPKLLEKINEIKGIE 264

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+ TSHP+D+S+ LI A  DL+ +  ++HLPVQSGS RILK+MNR +T  +Y +++++
Sbjct: 265 RIRFVTSHPKDLSNELIAAMRDLEKVCEHIHLPVQSGSTRILKAMNRHYTKEDYLRLVEK 324

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +++  PDIAI++D IVGFPGETD+DF  T+D+  K+ +  A++F YS R GTP   M  Q
Sbjct: 325 LKTNIPDIAITTDIIVGFPGETDEDFEDTLDVCKKVEFDSAYTFIYSKRRGTPAEKMPNQ 384

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           V +N+K +R   L K + E  +  N   +G+  E+LI+   K    LVGR+   + V + 
Sbjct: 385 VPDNIKHQRFQRLVKLVEEIALKKNKQMLGKTYEILIDGRSKRNNLLVGRTRTNKVVNVK 444

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                +   + V+I +     LYGE++
Sbjct: 445 CPEEYMFKFVNVKILEAAEHWLYGEVI 471


>gi|171464142|ref|YP_001798255.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Polynucleobacter
           necessarius subsp. necessarius STIR1]
 gi|229890593|sp|B1XS06|MIAB_POLNS RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|171193680|gb|ACB44641.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Polynucleobacter
           necessarius subsp. necessarius STIR1]
          Length = 448

 Score =  457 bits (1177), Expect = e-126,   Method: Composition-based stats.
 Identities = 189/451 (41%), Positives = 282/451 (62%), Gaps = 16/451 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ ++K++GCQMN YDS +M D+    +G    +  +DAD+++LNTC IREKA +KV+S 
Sbjct: 2   KKLYIKTFGCQMNEYDSGKMADLLHADEGMVMTDRPEDADVVLLNTCSIREKAEDKVFSD 61

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR+R LK    K   +LL+ V GCVA  EG++I+  +P V+VV GPQT +RL +L+ + 
Sbjct: 62  LGRLRELK----KTKPNLLIGVGGCVASQEGQQIVSHAPYVDVVFGPQTLHRLSDLIAKR 117

Query: 144 RF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           R  G   VD  +   +KF+ L       +R+   +A+++I EGC K+C++CVVPYTRG E
Sbjct: 118 RETGLFQVDISFPEIEKFDHLP-----ASRQTRGSAYVSIMEGCSKYCSYCVVPYTRGEE 172

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG-EKCTFSDLLYSLSEIKGLV 261
           +SRS   V+ E   L   GV EI LLGQNVNA+ GK  D  E   F+ L+  + EI G+ 
Sbjct: 173 VSRSFDDVLTEVAGLASKGVKEIVLLGQNVNAYLGKMGDRQEIADFALLIEYIVEIPGVE 232

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHP++ +  LI  +  +  L+ +LHLPVQ GSD +L +M R +TA E++ II +
Sbjct: 233 RIRFTTSHPKEFTQRLIDVYTKVPKLVSHLHLPVQHGSDAMLSAMKRGYTALEFKSIIRK 292

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R+VRPD+ +SSDFIVGFPGET+ DF   + +V+++ +  +F F +SPR GTP +N+ + 
Sbjct: 293 MRAVRPDLTLSSDFIVGFPGETEADFEKLLKMVEELNFDNSFCFIFSPRPGTPAANLHDD 352

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
               VK +RL  L   +  Q    +   +G I  VLIE   K+   L GR+   + +   
Sbjct: 353 TPYEVKLKRLQTLLALVESQANQISQKMLGNIERVLIEGLAKDGINLQGRAENNRVIHFT 412

Query: 442 SK----NHNIGDIIKVRITDVKISTLYGELV 468
           +      + IG ++ +RIT+V   TL G+LV
Sbjct: 413 APAQNIENLIGQMVDIRITEVLNYTLRGKLV 443


>gi|184159545|ref|YP_001847884.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Acinetobacter
           baumannii ACICU]
 gi|332873010|ref|ZP_08440969.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Acinetobacter baumannii
           6014059]
 gi|229890409|sp|B2HZ55|MIAB_ACIBC RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|183211139|gb|ACC58537.1| 2-methylthioadenine synthetase [Acinetobacter baumannii ACICU]
 gi|322509455|gb|ADX04909.1| 2-methylthioadenine synthetase [Acinetobacter baumannii 1656-2]
 gi|323519476|gb|ADX93857.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Acinetobacter
           baumannii TCDC-AB0715]
 gi|332738792|gb|EGJ69660.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Acinetobacter baumannii
           6014059]
          Length = 483

 Score =  457 bits (1177), Expect = e-126,   Method: Composition-based stats.
 Identities = 199/471 (42%), Positives = 294/471 (62%), Gaps = 22/471 (4%)

Query: 9   GVAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVL 67
                 +   D  I  ++ ++++ GCQMN YDS RM D+   S GY   N+ ++AD++++
Sbjct: 17  NTVTQPTHTTDVSI--KKLYIETQGCQMNEYDSHRMADLLGDSHGYVLTNNPNEADILLM 74

Query: 68  NTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVV 127
           NTC IREKA EKV+S LGR R LK        DL++ V GCVA  EG+ I +R+P V+++
Sbjct: 75  NTCSIREKAQEKVFSELGRWRKLKEQ----NPDLVIGVGGCVASQEGDNIQKRAPYVDMI 130

Query: 128 VGPQTYYRLPELLERA--------RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAF 179
            GPQT +RLP++L++         +   ++VD  +   +KF+ L        R  G  AF
Sbjct: 131 FGPQTLHRLPQMLDQHHAQVEKPKKEKIKLVDISFPDIEKFDFLP-----EPRVEGFKAF 185

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
           ++I EGC K+C+FCVVPYTRG E+SR L  V+ E   L + GV EI+LLGQNVN +RG+ 
Sbjct: 186 VSIMEGCSKYCSFCVVPYTRGEEVSRPLDDVLAEIAGLAEKGVREISLLGQNVNGYRGET 245

Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
            +G  CTF +LL  ++EI G+ RLRYTTSHP + SD LI+ + DL  ++ +LHLPVQSGS
Sbjct: 246 FEGGICTFPELLRLVAEIPGIGRLRYTTSHPLEFSDELIQCYEDLPQMVSHLHLPVQSGS 305

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
           + +LK+M R HT   Y   I ++R +RPD+ +SSDFI+GFPGETD++F  T+  +  + +
Sbjct: 306 NDVLKAMKRNHTIDVYIDKIAKLRKIRPDMHLSSDFIIGFPGETDENFAETLQFIKDLDF 365

Query: 360 AQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419
             ++SF YS R GTP S++ +   E+VK ERL  +Q+ +++  +   DA +G+I  VLIE
Sbjct: 366 DHSYSFVYSKRPGTPASDLPDTTPEHVKKERLAQVQQVIKQSSIEKTDAMLGKIERVLIE 425

Query: 420 KHGK-EKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKI-STLYGELV 468
           K    +   LVG +   + V        IG   ++ IT++K  + +YGEL+
Sbjct: 426 KVSDQDPNILVGTADNTRLVTFVGDASWIGRFAEIEITEIKTLNLVYGELL 476


>gi|255319762|ref|ZP_05360967.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Acinetobacter
           radioresistens SK82]
 gi|262380296|ref|ZP_06073450.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Acinetobacter
           radioresistens SH164]
 gi|255303081|gb|EET82293.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Acinetobacter
           radioresistens SK82]
 gi|262297742|gb|EEY85657.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Acinetobacter
           radioresistens SH164]
          Length = 485

 Score =  457 bits (1177), Expect = e-126,   Method: Composition-based stats.
 Identities = 194/471 (41%), Positives = 289/471 (61%), Gaps = 20/471 (4%)

Query: 9   GVAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVL 67
                        +  ++ ++++ GCQMN YDS RM D+   S GY   ++  DAD++++
Sbjct: 17  NTVTQPQHTPADNMPVKKLYIETQGCQMNEYDSHRMADLLGDSHGYILTSNPADADILLM 76

Query: 68  NTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVV 127
           NTC IREKA EKV+S LGR R LK+       DL++ V GCVA  EG+ I +R+P V++V
Sbjct: 77  NTCSIREKAQEKVFSELGRWRKLKDQ----NPDLVIGVGGCVASQEGDNIQKRAPYVDMV 132

Query: 128 VGPQTYYRLPELLERA--------RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAF 179
            GPQT +RLP++L++         +   ++VD  +   +KF+ L        R  G  AF
Sbjct: 133 FGPQTLHRLPQMLDQHIDQLEKPKKEKIKLVDISFPDIEKFDFLP-----EPRVEGYKAF 187

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
           ++I EGC K+C+FCVVPYTRG E+SR L  V+ E   L + GV EI LLGQNVN +RG+ 
Sbjct: 188 VSIMEGCSKYCSFCVVPYTRGEEVSRPLDDVLAEIAGLAEKGVREINLLGQNVNGYRGET 247

Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
            +G  CTF+DLL  ++EI G+ R+RYTTSHP + +D LI+ + DL  ++ +LHLPVQSGS
Sbjct: 248 FEGTICTFADLLRLVAEIPGIGRVRYTTSHPLEFNDDLIQCYRDLPQMVSHLHLPVQSGS 307

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
           + +L++M R HT   Y + I ++R VRPD+ +SSDFI+GFPGETD +F  T   + ++ +
Sbjct: 308 NDVLQAMKRNHTIDVYIEKIAKLRKVRPDMHLSSDFIIGFPGETDQNFEETYQFIQEMDF 367

Query: 360 AQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419
             ++SF YS R GTP S + +   E VK ERL  +Q+ +++  ++  +A  G I  VLIE
Sbjct: 368 DHSYSFIYSKRPGTPASELADDTPEEVKKERLARVQQWIKQSSIAKTNAMQGTIQRVLIE 427

Query: 420 KHG-KEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKI-STLYGELV 468
               ++   LVG +   + V        +G   ++ IT++K  + +YGEL+
Sbjct: 428 NISERDPNLLVGTADNTRLVTFIGDPAWVGRFAEIEITEIKTLNLVYGELL 478


>gi|302871702|ref|YP_003840338.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Caldicellulosiruptor
           obsidiansis OB47]
 gi|302574561|gb|ADL42352.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Caldicellulosiruptor
           obsidiansis OB47]
          Length = 471

 Score =  457 bits (1176), Expect = e-126,   Method: Composition-based stats.
 Identities = 174/447 (38%), Positives = 276/447 (61%), Gaps = 14/447 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +++ + +YGCQMNV+DS ++  M  + GY    ++ +ADLI+ NTC +RE A  +VY  +
Sbjct: 36  KKYHIVTYGCQMNVHDSEKLAGMLNAMGYVETENIQEADLIIFNTCSVREHAESRVYGNI 95

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAE--GEEILRRSPIVNVVVGPQTYYRLPELLER 142
           G ++ LK+       DL++ V GC+ Q     +++ +  P ++++ G ++ ++ P+LL  
Sbjct: 96  GPLKRLKDK----KPDLIIGVCGCMPQQVEVAQKLAKLFPFLDIIFGTKSLHKFPQLLYT 151

Query: 143 ARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           A   K+ V+D     +   E +        R++GV+AF+ I  GC+ FCT+C+VPY RG 
Sbjct: 152 AITEKKTVIDISEDEDVVVEGIPTA-----RRQGVSAFVNIIYGCNNFCTYCIVPYVRGR 206

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR   +++ E  +L+ NGV E+TLLGQNVN+  GK L     TF  LL  ++EIKG+ 
Sbjct: 207 ERSRRPEEIIYEIEQLVQNGVKEVTLLGQNVNS-YGKDL-ANGITFPKLLEKVNEIKGIE 264

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+ TSHP+D+SD LI A  DLD +  ++HLPVQSGS RILK+MNR +T  +Y +++++
Sbjct: 265 RIRFVTSHPKDLSDELIVAMRDLDKVCEHIHLPVQSGSTRILKAMNRHYTKEDYLRLVEK 324

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +++  PDIAI++D IVGFPGETD+DF  T+D+  K+ +  A++F YS R GTP   M  Q
Sbjct: 325 LKTNIPDIAITTDIIVGFPGETDEDFEDTLDVCQKVEFDSAYTFIYSKRRGTPAEKMPNQ 384

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           V E++K +R   L K + E  +  N   +G+  E+LI+   K    LVGR+   + V + 
Sbjct: 385 VPEDIKHQRFQRLVKLVEEIALKKNKQMLGKTYEILIDSRSKRNNLLVGRTRTNKVVNVK 444

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
             +  +   + V+I +     LYGE++
Sbjct: 445 CPDEYMFKFVNVKILEAAEHWLYGEVI 471


>gi|168180374|ref|ZP_02615038.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Clostridium botulinum
           NCTC 2916]
 gi|226949042|ref|YP_002804133.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Clostridium
           botulinum A2 str. Kyoto]
 gi|182668731|gb|EDT80709.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Clostridium botulinum
           NCTC 2916]
 gi|226843034|gb|ACO85700.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Clostridium botulinum A2
           str. Kyoto]
          Length = 450

 Score =  457 bits (1176), Expect = e-126,   Method: Composition-based stats.
 Identities = 174/445 (39%), Positives = 262/445 (58%), Gaps = 13/445 (2%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           FF++++GCQMN  DS ++  M   +GY R    ++AD+I+ NTC +RE A  KVY  LG 
Sbjct: 16  FFIETWGCQMNEEDSEKLSGMLKKEGYIRTEERENADVIIFNTCCVRENAELKVYGNLGI 75

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           ++ LK+       +L++ V GC+ Q +G  E I ++ P V++++G    +  P  L   +
Sbjct: 76  LKGLKSK----NPNLIIAVTGCMMQQKGMAETIKKKFPFVDIIIGTHNLHNFPNYLNEVK 131

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
                V      E+       +D    RK  + AF+TI  GC+ FCT+C+VPY RG E S
Sbjct: 132 KKDTSVLKIQEKENSIIENMPID----RKNSMKAFVTIMYGCNNFCTYCIVPYVRGRERS 187

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R+   +  E +KLI     EITLLGQNVN+  GK L+    TF++LL  ++ I+GL R+R
Sbjct: 188 RTPENIEAEIKKLISEDYKEITLLGQNVNS-YGKDLEPN-VTFAELLKRVNNIEGLERVR 245

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           + TSHP+D++D +I+A    D L   +HLPVQSGS  ILK MNR +   +Y  ++ +I+ 
Sbjct: 246 FMTSHPKDLTDDVIEAIAKCDKLCEQIHLPVQSGSSEILKKMNRHYDREKYLDVVSKIKK 305

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           + P++A+S+D IVGFPGET+ DF  T+ LV ++ Y  AF+F YS R GTP +   +QV E
Sbjct: 306 LIPNVALSTDIIVGFPGETEKDFEKTLSLVKEVEYDSAFTFLYSIRKGTPAAKFEDQVPE 365

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVLNSK 443
           +VK +R   L + L E     N A  G+I EVL+E   K ++ KL+GR+   + V     
Sbjct: 366 DVKHKRFNRLVEVLNEISAKKNKAYEGKIEEVLVEGTSKNDENKLMGRTRTGKLVNFIGD 425

Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468
             +IG+++ V+I      +L GE +
Sbjct: 426 KDSIGELVNVKIIKANSFSLTGEEI 450


>gi|323705356|ref|ZP_08116931.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323535258|gb|EGB25034.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 473

 Score =  457 bits (1176), Expect = e-126,   Method: Composition-based stats.
 Identities = 177/446 (39%), Positives = 274/446 (61%), Gaps = 13/446 (2%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +F +++YGCQMNV+DS ++  M    GY+  ++++DAD+I+ NTC +R+ A  +++  + 
Sbjct: 34  KFHIETYGCQMNVHDSEKLAGMLTEMGYQHTDNLEDADVILFNTCCVRQHAEIRIFGRVS 93

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +++ LK        ++++ + GC+ Q +     I +  P +++V G    ++ PE+L+ A
Sbjct: 94  QLKELKQR----KPNIILGICGCMMQEKEVVAAIRKDYPYIDMVFGTHNLFKFPEILQEA 149

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
                 V   +          + D    R  G+ A++ I  GC+ FCT+C+VPY RG E 
Sbjct: 150 LNSDTTVIDVWDDNSNI----VEDIPIRRAEGLKAWVNIIYGCNNFCTYCIVPYVRGRER 205

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR    ++DE + L D G  EITLLGQNVN+  G  L  +K  F+DLLY ++ I G+ R+
Sbjct: 206 SREPKDIIDEIKSLADEGFKEITLLGQNVNS-YGNDLS-QKVDFADLLYMINNINGIERI 263

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+ TSHP+D+SD LI A  DLD +  +LHLPVQSGS+RIL+ MNR++T   Y +II+++R
Sbjct: 264 RFMTSHPKDISDKLIFAIRDLDKVCEHLHLPVQSGSNRILEKMNRKYTRERYLEIIEKLR 323

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              PDIAI++D IVGFPGETD+DF+ T+DLV K+ Y  A++F YS R GT    M +QVD
Sbjct: 324 DNIPDIAITTDIIVGFPGETDEDFQDTLDLVKKVKYDSAYTFIYSKRKGTVAEKMPDQVD 383

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVLNS 442
           E++K +RL  L K      +  N+   G+I+EVL+E   K +  KL GR+   + V    
Sbjct: 384 EDIKHKRLEELIKLQNSISIEKNNEMNGKIVEVLVEGTSKRDSDKLTGRTRTNKIVHFKG 443

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
           +++ IG  + V+I + K  T+ GEL+
Sbjct: 444 ESNLIGKFVDVKIIETKAWTMQGELI 469


>gi|311695357|gb|ADP98230.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [marine bacterium HP15]
          Length = 448

 Score =  457 bits (1176), Expect = e-126,   Method: Composition-based stats.
 Identities = 194/452 (42%), Positives = 282/452 (62%), Gaps = 15/452 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++ ++K++GCQMN YDS RM D+  + +  E  +S DDAD+++LNTC IREKA EKV+
Sbjct: 1   MAKKLYIKTHGCQMNEYDSARMADLLKTGETVEMTDSPDDADILLLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR + LK+       ++++ V GCVA  EG+ I+ R+P V++V GPQT +RLP+++ 
Sbjct: 61  HQLGRWKKLKSK----KPEMIIGVGGCVASQEGQAIIDRAPYVDMVFGPQTLHRLPDMIT 116

Query: 142 RAR---FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
             R    G  VVD  +   +KF+ L           G +AF++I EGC K+CTFCVVPYT
Sbjct: 117 EVRAKGNGVGVVDVSFPEIEKFDNLP-----EPGADGPSAFVSIMEGCSKYCTFCVVPYT 171

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258
           RG E+SR    V+ E   L   GV E+ LLGQNVNA+RG+  DG+    ++L+  ++ I 
Sbjct: 172 RGEEVSRPADDVIAEVAHLASQGVREVNLLGQNVNAYRGETHDGDTMDLAELIELIATID 231

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           G+ R+RYTTSHP + SD LI  +  +  L+ +LHLPVQSGSDRIL +M R HTA EY+  
Sbjct: 232 GIDRIRYTTSHPVEFSDALIDVYERVPELVSHLHLPVQSGSDRILAAMKRGHTALEYKSK 291

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           + R+R +RPDI+ SSDFI+GFPGET+ DF  TM L++ IG+  +FSF YS R GTP S++
Sbjct: 292 LRRLRKIRPDISFSSDFIIGFPGETEKDFEDTMKLINDIGFDMSFSFVYSARPGTPASDL 351

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQS 437
            +    ++K +RL  LQ +L +  +  +   VG    +L+     K+ G+  GR+   + 
Sbjct: 352 PDDTPMDIKKQRLSILQDRLNQNVMDISRKMVGSTQRILVTGLSKKDPGEYAGRTENNRI 411

Query: 438 VVLNSKNHN-IGDIIKVRITDVKISTLYGELV 468
           V    +N   +G  I V I +   ++L G  V
Sbjct: 412 VNFRHENPEVVGHFIDVNIVEAYPNSLRGVPV 443


>gi|317129126|ref|YP_004095408.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cellulosilyticus
           DSM 2522]
 gi|315474074|gb|ADU30677.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cellulosilyticus
           DSM 2522]
          Length = 516

 Score =  457 bits (1175), Expect = e-126,   Method: Composition-based stats.
 Identities = 175/448 (39%), Positives = 262/448 (58%), Gaps = 15/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++F +++YGCQMN +DS  M  +  + G+E  ++ DDAD+I+LNTC IRE A  KV+  +
Sbjct: 73  KKFLIRTYGCQMNEHDSENMAGILLNMGFESTSNSDDADVILLNTCAIRENAENKVFGEI 132

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G ++ +K    +E  +L+V V GC++Q E     IL++   V+++ G    +RLP LL+ 
Sbjct: 133 GHLKTMK----RERPELIVGVCGCMSQEESVVNRILQKHQHVDLIFGTHNIHRLPTLLKN 188

Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           A F K +V   +S E D  E +        RK  +  ++ I  GCDKFCT+C+VPYTRG 
Sbjct: 189 AIFNKEMVVEVWSKEGDIIENMPRA-----RKGQIQGWVNIMYGCDKFCTYCIVPYTRGK 243

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR    +++E R L  NG  EITLLGQNVNA  GK L        DL+  + +I  + 
Sbjct: 244 ERSRRPEDIIEEVRHLARNGYKEITLLGQNVNA-YGKDLVDMDYGLGDLMDEIRKID-IP 301

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHP+D  D LI+       L+ ++HLPVQSG+  +LK M R++T  EY  +  +
Sbjct: 302 RVRFTTSHPKDFDDHLIEVLAKGGNLVEHIHLPVQSGNSDVLKLMARKYTREEYVTLAKK 361

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I+   P  + ++D IVGFP ETD  F  T+ LV ++ Y  A+++ YSPR GTP + M + 
Sbjct: 362 IKEAIPHASFTTDIIVGFPNETDAQFEDTLSLVREMEYDSAYTYVYSPREGTPAAKMNDN 421

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVL 440
           +   VK ERL  L   + E     N +  G+++EVL+E   K+    L GR+   + V  
Sbjct: 422 IPMEVKKERLQRLNALVNEISAEKNKSYQGRVVEVLVEGESKKNPDILAGRTRTNRLVNF 481

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                +IG+I+ V+IT+ K  +L G +V
Sbjct: 482 KGAKSSIGEIVYVKITEAKSWSLDGHVV 509


>gi|239504221|ref|ZP_04663531.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Acinetobacter baumannii
           AB900]
          Length = 483

 Score =  457 bits (1175), Expect = e-126,   Method: Composition-based stats.
 Identities = 198/471 (42%), Positives = 294/471 (62%), Gaps = 22/471 (4%)

Query: 9   GVAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVL 67
                 +   D  I  ++ ++++ GCQMN YDS RM D+   S GY   N+ ++AD++++
Sbjct: 17  NTVTQPTHTTDVSI--KKLYIETQGCQMNEYDSHRMADLLGDSHGYVLTNNPNEADILLM 74

Query: 68  NTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVV 127
           NTC IREKA EKV+S LGR R LK        DL++ V GCVA  EG+ I +R+P V+++
Sbjct: 75  NTCSIREKAQEKVFSELGRWRKLKEQ----NPDLVIGVGGCVASQEGDNIQKRAPYVDMI 130

Query: 128 VGPQTYYRLPELLERA--------RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAF 179
            GPQT +RLP++L++         +   ++VD  +   +KF+ L        R  G  AF
Sbjct: 131 FGPQTLHRLPQMLDQHHAQVEKPKKEKIKLVDISFPDIEKFDFLP-----EPRVEGFKAF 185

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
           ++I EGC K+C+FCVVPYTRG E+SR L  V+ E   L + GV EI+LLGQNVN +RG+ 
Sbjct: 186 VSIMEGCSKYCSFCVVPYTRGEEVSRPLDDVLAEIAGLAEKGVREISLLGQNVNGYRGET 245

Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
            +G  CTF +LL  ++EI G+ RLRYTTSHP + SD LI+ + DL  ++ +LHLPVQSGS
Sbjct: 246 FEGGICTFPELLRLVAEIPGIGRLRYTTSHPLEFSDELIQCYEDLPQMVSHLHLPVQSGS 305

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
           + +LK+M R HT   Y   I ++R +RPD+ +SSDFI+GFPGETD++F  T+  +  + +
Sbjct: 306 NDVLKAMKRNHTIDVYIDKIAKLRKIRPDMHLSSDFIIGFPGETDENFAETLQFIKDLNF 365

Query: 360 AQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419
             ++SF YS R GTP S++ +   E+VK ERL  +Q+ +++  +   DA +G+I  VLIE
Sbjct: 366 DHSYSFVYSKRPGTPASDLPDTTPEHVKKERLAQVQQVIKQSSIEKTDAMLGKIERVLIE 425

Query: 420 KHGK-EKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKI-STLYGELV 468
           K    +   LVG +   + V        +G   ++ IT++K  + +YGEL+
Sbjct: 426 KVSDQDPNILVGTADNTRLVTFVGDASWVGRFAEIEITEIKTLNLVYGELL 476


>gi|77359992|ref|YP_339567.1| involved in methylthiolation of isopentenylated A37 derivatives in
           tRNA, Fe-S protein [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76874903|emb|CAI86124.1| involved in methylthiolation of isopentenylated A37 derivatives in
           tRNA, Fe-S protein [Pseudoalteromonas haloplanktis
           TAC125]
          Length = 469

 Score =  457 bits (1175), Expect = e-126,   Method: Composition-based stats.
 Identities = 192/437 (43%), Positives = 279/437 (63%), Gaps = 13/437 (2%)

Query: 36  MNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSR 94
           MN YDS +M ++  +  GY+  +   DAD+I+LNTC IREKA EKV+  LGR + LK+  
Sbjct: 1   MNEYDSQKMAELLDATNGYQLTDDATDADVILLNTCSIREKAQEKVFHQLGRWKLLKD-- 58

Query: 95  IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR--FGKRVVDT 152
             +  DL++ V GCVA  EG+ I +R+P V+V+ GPQT +RLPE++++ +   G  VVD 
Sbjct: 59  --DKPDLIIGVGGCVASQEGDSIRQRAPFVDVIFGPQTLHRLPEMIKQVQGDKGSSVVDI 116

Query: 153 DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVD 212
            +   +KF+RL        +  G +AF++I EGC K+CTFCVVPYTRG E+SR +  V+ 
Sbjct: 117 SFPEIEKFDRLP-----EPKADGPSAFVSIMEGCSKYCTFCVVPYTRGEEVSRPVDDVLL 171

Query: 213 EARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
           E  +L +  V E+ LLGQNVNA+RG   DGE C FSDL+  ++ I G+ R+RYTTSHP +
Sbjct: 172 EIAQLAEQSVREVNLLGQNVNAYRGDTHDGEICYFSDLIRLIAAIDGIDRIRYTTSHPVE 231

Query: 273 MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAIS 332
            +  ++  + D+  L+ +LHLPVQSGSDRIL  M R HTA EY+  I ++R +RP++++S
Sbjct: 232 FTQDIVDVYADVPELVDHLHLPVQSGSDRILNLMKRGHTAIEYKSTIRKLRKIRPNLSMS 291

Query: 333 SDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLL 392
           SDFI+GFPGET DDF ATM L+  +G+  +FSF YS R GTP +++ + V E  K ERL 
Sbjct: 292 SDFIIGFPGETQDDFEATMKLISDVGFDMSFSFIYSARPGTPAADLPDDVTEQEKKERLY 351

Query: 393 CLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNSKNHNIGDII 451
            LQ ++ +     +         +L+E   K+   +L GR+   + V     +  IG  +
Sbjct: 352 LLQNRITQMAQQISRQMFDTEQRILVEGPSKKNPMELRGRTENNRVVNFVGPHTVIGQFV 411

Query: 452 KVRITDVKISTLYGELV 468
            VRIT+   ++L G+L+
Sbjct: 412 DVRITEALPNSLRGDLI 428


>gi|27904873|ref|NP_777999.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Buchnera
           aphidicola str. Bp (Baizongia pistaciae)]
 gi|46397184|sp|Q89AC2|MIAB_BUCBP RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|27904271|gb|AAO27104.1| hypothetical protein bbp_392 [Buchnera aphidicola str. Bp
           (Baizongia pistaciae)]
          Length = 445

 Score =  457 bits (1175), Expect = e-126,   Method: Composition-based stats.
 Identities = 183/443 (41%), Positives = 276/443 (62%), Gaps = 12/443 (2%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + ++K++GCQMN YDS  +  +     GYE       A++++LNTC IREKA EKV+  L
Sbjct: 5   KIYIKTWGCQMNEYDSALITQILKQKHGYENTKDPKLANVLILNTCSIREKAQEKVFHQL 64

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR + LK        +L++ V GCVA  EG+ I +R+  V+++ G QT + LP +++  +
Sbjct: 65  GRWKKLKQK----NPNLIIAVGGCVATQEGKNIYKRANYVDIIFGTQTLHYLPNMIQEVK 120

Query: 145 FGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             K+ V + D+ + +KF  +      Y RK  VTAF++I EGC+KFC+FC+VPYTRG EI
Sbjct: 121 KNKKSVTNIDFPLTEKFNFIE-----YPRKPKVTAFVSIMEGCNKFCSFCIVPYTRGHEI 175

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR +  ++ E   L   GV EI LLGQNVN+++GK  +G+ C FS+LL  ++ I G+ R+
Sbjct: 176 SRPVDDILLEISTLSSRGVKEIHLLGQNVNSYKGKTFNGDICKFSNLLRLVASIDGIDRI 235

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+TTS+P + +D +I+ + ++  ++ +LHLPVQSGS+RIL+ M R HT  EY+ II++I 
Sbjct: 236 RFTTSNPFEFTDDIIEIYAEIPKIVSFLHLPVQSGSNRILQLMKRMHTIDEYKTIINKIL 295

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
            +RP+I ISSDFI+GFPGET  DF  T+ L+  +    ++SF YSPR GTP S + + V 
Sbjct: 296 KLRPNIQISSDFIIGFPGETLIDFEQTLQLIKDLNIDMSYSFIYSPRPGTPASELQDNVT 355

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLNS 442
              K +RL  LQ  +R     +N   +G I  VL+E    K   +L GR+   + V    
Sbjct: 356 LCEKQKRLHILQTLIRNNTTMWNQKMLGSIQSVLVEGRSQKNPKELFGRTENNRIVNFKG 415

Query: 443 KNHNIGDIIKVRITDVKISTLYG 465
             + IG+ I ++IT +  ++L G
Sbjct: 416 NQNMIGEFINLKITKINPNSLRG 438


>gi|332799273|ref|YP_004460772.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Tepidanaerobacter sp. Re1]
 gi|332697008|gb|AEE91465.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Tepidanaerobacter sp. Re1]
          Length = 437

 Score =  457 bits (1175), Expect = e-126,   Method: Composition-based stats.
 Identities = 163/446 (36%), Positives = 260/446 (58%), Gaps = 14/446 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           ++ + ++GCQMN++DS  +  +    GY   +++ ++D+I+LNTC +RE A  KVY  + 
Sbjct: 2   KYKILTWGCQMNIHDSEIISGVMQKMGYCPADTLQESDVIILNTCCVRENAERKVYGRIA 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +++  K+       +L++ V+GC+ Q     E I  + P V+++ G +  ++LPEL+E  
Sbjct: 62  QLKQFKSK----NPNLILAVSGCMVQQPHVVEYISEKLPYVDILFGIKNVHKLPELIEST 117

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           R     V          E L I            A++TI  GC+ +C++C+VPY RG E+
Sbjct: 118 RQTNLPVIDISGDSMIDENLPI-----KHTNDAKAWVTITYGCNNYCSYCIVPYVRGKEV 172

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR    ++ E   L +NG  EI LLGQNVN+  GK L+    TF +LL  ++++ G+ R+
Sbjct: 173 SRRPDDILREIETLANNGFIEINLLGQNVNS-YGKDLN-IPVTFPELLRRVNDVDGIKRI 230

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+ TSHP+D+S+ LI A  D   +  ++HLPVQSGS++IL  MNR++T   Y ++I ++R
Sbjct: 231 RFITSHPKDLSNELILAMRDCKKVCEHIHLPVQSGSNQILSKMNRKYTREHYIELIYKLR 290

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              P+IAI++D IVGFPGET+ DF  T++LV  + +  AF+F YS R GTP + M +Q+D
Sbjct: 291 DAIPNIAITTDIIVGFPGETEKDFLDTLELVKAVEFDSAFTFMYSKRKGTPAAKMADQID 350

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNS 442
            ++K +RL  L +       S N+   G I EVL+E   K    +L GRS   + V  + 
Sbjct: 351 NDIKKDRLNRLMQLQDAITESKNNRLKGTIQEVLVEGVSKGNINRLSGRSRTNKLVNFDG 410

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
               IG ++ V+I +    +L GE+V
Sbjct: 411 SEKLIGKLVNVKIIEPHTWSLLGEIV 436


>gi|169794647|ref|YP_001712440.1| putative tRNA-i(6)A37 modification enzyme (MiaB) [Acinetobacter
           baumannii AYE]
 gi|213157982|ref|YP_002320780.1| tRNA-i(6)A37 thiotransferase [Acinetobacter baumannii AB0057]
 gi|215482236|ref|YP_002324418.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Acinetobacter baumannii
           AB307-0294]
 gi|301345373|ref|ZP_07226114.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Acinetobacter
           baumannii AB056]
 gi|301511255|ref|ZP_07236492.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Acinetobacter
           baumannii AB058]
 gi|301595637|ref|ZP_07240645.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Acinetobacter
           baumannii AB059]
 gi|332855636|ref|ZP_08435979.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Acinetobacter baumannii
           6013150]
 gi|332868551|ref|ZP_08438217.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Acinetobacter baumannii
           6013113]
 gi|229890407|sp|B7GW55|MIAB_ACIB3 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|229890408|sp|B7I9D5|MIAB_ACIB5 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|229890411|sp|B0V6R4|MIAB_ACIBY RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|169147574|emb|CAM85435.1| putative tRNA-i(6)A37 modification enzyme (MiaB) [Acinetobacter
           baumannii AYE]
 gi|213057142|gb|ACJ42044.1| tRNA-i(6)A37 thiotransferase [Acinetobacter baumannii AB0057]
 gi|213987152|gb|ACJ57451.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Acinetobacter baumannii
           AB307-0294]
 gi|332727351|gb|EGJ58787.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Acinetobacter baumannii
           6013150]
 gi|332733321|gb|EGJ64514.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Acinetobacter baumannii
           6013113]
          Length = 483

 Score =  457 bits (1175), Expect = e-126,   Method: Composition-based stats.
 Identities = 198/471 (42%), Positives = 294/471 (62%), Gaps = 22/471 (4%)

Query: 9   GVAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVL 67
                 +   D  I  ++ ++++ GCQMN YDS RM D+   S GY   N+ ++AD++++
Sbjct: 17  NTVTQPTHTTDVSI--KKLYIETQGCQMNEYDSHRMADLLGDSHGYVLTNNPNEADILLM 74

Query: 68  NTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVV 127
           NTC IREKA EKV+S LGR R LK        DL++ V GCVA  EG+ I +R+P V+++
Sbjct: 75  NTCSIREKAQEKVFSELGRWRKLKEQ----NPDLVIGVGGCVASQEGDNIQKRAPYVDMI 130

Query: 128 VGPQTYYRLPELLERA--------RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAF 179
            GPQT +RLP++L++         +   ++VD  +   +KF+ L        R  G  AF
Sbjct: 131 FGPQTLHRLPQMLDQHHAQVEKPKKEKIKLVDISFPDIEKFDFLP-----EPRVEGFKAF 185

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
           ++I EGC K+C+FCVVPYTRG E+SR L  V+ E   L + GV EI+LLGQNVN +RG+ 
Sbjct: 186 VSIMEGCSKYCSFCVVPYTRGEEVSRPLDDVLAEIAGLAEKGVREISLLGQNVNGYRGET 245

Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
            +G  CTF +LL  ++EI G+ RLRYTTSHP + SD LI+ + DL  ++ +LHLPVQSGS
Sbjct: 246 FEGGICTFPELLRLVAEIPGIGRLRYTTSHPLEFSDELIQCYEDLPQMVSHLHLPVQSGS 305

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
           + +LK+M R HT   Y   I ++R +RPD+ +SSDFI+GFPGETD++F  T+  +  + +
Sbjct: 306 NDVLKAMKRNHTIDVYIDKIAKLRKIRPDMHLSSDFIIGFPGETDENFAETLQFIKDLDF 365

Query: 360 AQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419
             ++SF YS R GTP S++ +   E+VK ERL  +Q+ +++  +   DA +G+I  VLIE
Sbjct: 366 DHSYSFVYSKRPGTPASDLPDTTPEHVKKERLAQVQQVIKQSSIEKTDAMLGKIERVLIE 425

Query: 420 KHGK-EKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKI-STLYGELV 468
           K    +   LVG +   + V        +G   ++ IT++K  + +YGEL+
Sbjct: 426 KVSDQDPNILVGTADNTRLVTFVGDASWVGRFAEIEITEIKTLNLVYGELL 476


>gi|304310522|ref|YP_003810120.1| 2-methylthioadenine synthetase [gamma proteobacterium HdN1]
 gi|301796255|emb|CBL44463.1| 2-methylthioadenine synthetase [gamma proteobacterium HdN1]
          Length = 445

 Score =  456 bits (1174), Expect = e-126,   Method: Composition-based stats.
 Identities = 188/447 (42%), Positives = 284/447 (63%), Gaps = 13/447 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++ F++++GCQMN YDS RM D+  S + YER +   +AD+I+LNTC +REKA EKV+
Sbjct: 1   MAKKLFIETHGCQMNEYDSARMADLLGSTEDYERTDDPAEADVILLNTCSVREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR R LK         L++ V GCVA  EG  IL+R+P V++V GPQT +R+PE++ 
Sbjct: 61  HQLGRWRKLKE----VNPALVIGVGGCVASQEGSAILKRAPHVDMVFGPQTLHRIPEMMG 116

Query: 142 RAR-FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
             + + K VVD  +   +KF++L           G  AF+++ EGC K+C+FCVVPYTRG
Sbjct: 117 AVKMYHKPVVDVSFPEIEKFDKLP-----DPSVEGPKAFISVMEGCSKYCSFCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR    V+ E R L   GV E+ LLGQNVNA+RG+   GE    ++L+  ++ + G+
Sbjct: 172 EEVSRHFEDVMREVRHLETLGVREVNLLGQNVNAYRGENEHGEIVDLAELIEHIAALPGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+RYTTSHP + SD L+ A+  +  L+ +LHLP QSGSDRIL +M R HT  +Y   I 
Sbjct: 232 GRIRYTTSHPMECSDALVDAYRRIPKLVSHLHLPAQSGSDRILAAMKRNHTRADYLAWIT 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           +++  RPD+ +SSDFI+GFPGET+DDF  T+ L++++GY  +FSF YSPR GTP +++ +
Sbjct: 292 KLKEARPDLCVSSDFIIGFPGETEDDFNDTLQLIEEVGYDTSFSFVYSPRPGTPAADLPD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVV 439
            + +  K  RL  LQ ++ +  +S +   VG +  +L++ +  K+ G+L GR+   + V 
Sbjct: 352 DMPDEEKKRRLALLQHRIIQNALSISRRMVGTVQTILVDGYSKKDPGQLQGRTENNRVVN 411

Query: 440 LN-SKNHNIGDIIKVRITDVKISTLYG 465
                +  IG  +K+ I +   ++L G
Sbjct: 412 FRHDDDGLIGKFVKIGIEEALPNSLRG 438


>gi|297617255|ref|YP_003702414.1| RNA modification enzyme, MiaB family [Syntrophothermus lipocalidus
           DSM 12680]
 gi|297145092|gb|ADI01849.1| RNA modification enzyme, MiaB family [Syntrophothermus lipocalidus
           DSM 12680]
          Length = 447

 Score =  456 bits (1174), Expect = e-126,   Method: Composition-based stats.
 Identities = 179/452 (39%), Positives = 267/452 (59%), Gaps = 19/452 (4%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + +++ + +YGCQMN  D+  +  +    GY    S ++A+LI+ NTC +R  A  KVY 
Sbjct: 7   IRKKYSILTYGCQMNERDTETIAGLLEKSGYVEAASPEEANLIIFNTCSVRTSAENKVYG 66

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPI---VNVVVGPQTYYRLPEL 139
            LG I+ LK +R     DLLV   GC+AQ   EE+ ++      V+++ G    + LP L
Sbjct: 67  KLGEIKRLKKAR----PDLLVGFGGCMAQ--MEEVRKKLGEGGVVDIIFGTHNLHELPRL 120

Query: 140 LERARFG--KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197
           +E+A  G  + V+D      D  E L        R  GV+AF+ I  GC+ FC++C+VP+
Sbjct: 121 VEKAEAGVERPVIDVWPEAGDIVEGLP-----ARRTGGVSAFVNIMFGCNNFCSYCIVPF 175

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257
           TRG E SR  S ++DE + L+  GV E+TLLGQNVN+  GKGL+ E   F+ LL  ++EI
Sbjct: 176 TRGRERSRKPSDIIDEVKDLVQQGVKEVTLLGQNVNS-YGKGLEPE-TDFASLLELVNEI 233

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
            GL R+R+TTSHPRD+S+ L+        +  ++H P+Q+GS+RILK+MNR +T   Y  
Sbjct: 234 PGLERIRFTTSHPRDVSERLLSTIASCRKVCEHIHAPLQAGSNRILKAMNRGYTREYYLD 293

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
           ++ ++R + P +A+++D IVGFPGE+D DF  T+D+V +I +  AF+F YSPR GT  + 
Sbjct: 294 LVHKMREIVPGVAVTTDLIVGFPGESDRDFEDTIDMVKRIRFDAAFTFMYSPRSGTKAAR 353

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQ 436
           + +QV   VK ERLL L +      +  N    G+ +EVL+E   K   + L GR+   +
Sbjct: 354 LSDQVPLEVKKERLLQLNEIQYNIALEANRRFEGKDVEVLVEGPSKTNPRKLTGRTRTNR 413

Query: 437 SVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            VV   K    G ++ VR+ + K  TL GE V
Sbjct: 414 IVVFEGKPDLAGRLVMVRVREAKTFTLLGEAV 445


>gi|323170787|gb|EFZ56437.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli LT-68]
 gi|332096864|gb|EGJ01854.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Shigella dysenteriae
           155-74]
          Length = 453

 Score =  456 bits (1174), Expect = e-126,   Method: Composition-based stats.
 Identities = 188/428 (43%), Positives = 275/428 (64%), Gaps = 12/428 (2%)

Query: 44  MEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLL 102
           M D+  +  GY+  +  ++AD+++LNTC IREKA EKV+  LGR + LK        DL+
Sbjct: 1   MADLLDATHGYQLTDVAEEADVLLLNTCSIREKAQEKVFHQLGRWKLLKEK----NPDLI 56

Query: 103 VVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR-VVDTDYSVEDKFE 161
           + V GCVA  EGE I +R+  V+++ GPQT +RLPE++   R  +  VVD  +   +KF+
Sbjct: 57  IGVGGCVASQEGEHIRQRAHYVDIIFGPQTLHRLPEMINSVRGDRSPVVDISFPEIEKFD 116

Query: 162 RLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNG 221
           RL        R  G TAF++I EGC+K+CT+CVVPYTRG E+SR    ++ E  +L   G
Sbjct: 117 RLP-----EPRAEGPTAFVSIMEGCNKYCTYCVVPYTRGEEVSRPSDDILFEIAQLAAQG 171

Query: 222 VCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAH 281
           V E+ LLGQNVNAWRG+  DG   +F+DLL  ++ I G+ R+R+TTSHP + +D +I+ +
Sbjct: 172 VREVNLLGQNVNAWRGENYDGTTGSFADLLRLVAAIDGIDRIRFTTSHPIEFTDDIIEVY 231

Query: 282 GDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPG 341
            D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II ++R+ RPDI ISSDFIVGFPG
Sbjct: 232 RDTPELVSFLHLPVQSGSDRILNLMGRTHTALEYKAIIRKLRAARPDIQISSDFIVGFPG 291

Query: 342 ETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQ 401
           ET +DF  TM L+  + +  ++SF +S R GTP ++M++ V E  K +RL  LQ+++ +Q
Sbjct: 292 ETTEDFEKTMKLIADVNFDMSYSFIFSARPGTPAADMVDDVPEEEKKQRLYILQERINQQ 351

Query: 402 QVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKI 460
            ++++   +G    +L+E   ++   +L GR+   + V        IG  + V ITDV  
Sbjct: 352 AMAWSRRMLGTTQRILVEGTSRKSIMELSGRTENNRVVNFEGTPDMIGKFVDVEITDVYP 411

Query: 461 STLYGELV 468
           ++L G++V
Sbjct: 412 NSLRGKVV 419


>gi|126666981|ref|ZP_01737957.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Marinobacter sp. ELB17]
 gi|126628697|gb|EAZ99318.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Marinobacter sp. ELB17]
          Length = 448

 Score =  456 bits (1174), Expect = e-126,   Method: Composition-based stats.
 Identities = 196/449 (43%), Positives = 277/449 (61%), Gaps = 15/449 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++ F+K++GCQMN YDS RM D+    +  E  +S +DAD+++LNTC IREKA EKV+
Sbjct: 1   MAKKLFIKTHGCQMNEYDSSRMADLLKVGEAVEMTDSPEDADILLLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR +NLK    K    L++ V GCVA  EG+ I+ R+P V++V GPQT +RLP ++ 
Sbjct: 61  HQLGRWKNLK----KNKPGLIIGVGGCVASQEGQAIIDRAPFVDMVFGPQTLHRLPAMIT 116

Query: 142 RAR---FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
             R    G  VVD  +   +KF+ L           G +AF++I EGC K+CTFCVVPYT
Sbjct: 117 EVRAKGNGVGVVDVSFPEIEKFDNLP-----EPGADGPSAFVSIMEGCSKYCTFCVVPYT 171

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258
           RG E+SR    V+ E   L    V EI LLGQNVNA+RG   DG+    ++L+  ++ I 
Sbjct: 172 RGEEVSRPADDVIAEVAHLASQNVREINLLGQNVNAYRGDTHDGDVMDLAELITLIATID 231

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           G+ R+RYTTSHP + +D LI  +  +  L+ +LHLPVQSGSDRIL +M R HTA EY+  
Sbjct: 232 GIDRIRYTTSHPVEFTDALIDVYEQVPELVSHLHLPVQSGSDRILSAMKRGHTALEYKSK 291

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           + R+R +RPDI+ SSDFI+GFPGET+ DF  TM L++ IG+  +FSF YS R GTP S++
Sbjct: 292 LRRLRKIRPDISFSSDFIIGFPGETEKDFEDTMKLINDIGFDMSFSFIYSARPGTPASDL 351

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQS 437
            +  +  VK +RL  LQ ++ +  +  +   VG    +L+     K+ G+  GR+   + 
Sbjct: 352 PDDTEMAVKKQRLKILQDRINQTVMDISRKMVGTTQRILVTGLSKKDPGEFSGRTENNRI 411

Query: 438 VVLNSKN-HNIGDIIKVRITDVKISTLYG 465
           V    +N   IG  I V I +   ++L G
Sbjct: 412 VNFRHENSAAIGHFIDVEIVEAYSNSLRG 440


>gi|251777774|ref|ZP_04820694.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Clostridium botulinum E1
           str. 'BoNT E Beluga']
 gi|243082089|gb|EES47979.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Clostridium botulinum E1
           str. 'BoNT E Beluga']
          Length = 457

 Score =  456 bits (1174), Expect = e-126,   Method: Composition-based stats.
 Identities = 185/447 (41%), Positives = 270/447 (60%), Gaps = 13/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + FF++++GCQMN  DS ++  M  SQGYE   + D+A +++ NTC +RE A  KV+  L
Sbjct: 19  KHFFIETWGCQMNEEDSEKLSGMLKSQGYEETENRDEASIVIFNTCCVRENAENKVFGNL 78

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           GR++N K        +L++ + GC+ Q +G  +EIL R P V+++ G    Y+ PE L R
Sbjct: 79  GRLKNQKEK----NPNLIIALCGCMMQQKGMADEILSRFPYVDIIFGTHNAYKFPEYLHR 134

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            +     V   +  E +      +D    RK  V AF+TI  GC+ FCT+CVVPY RG E
Sbjct: 135 VQVEGVQVKEIFDKETEIVEGVPID----RKSNVKAFVTIMYGCNNFCTYCVVPYVRGRE 190

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR    + +E ++L+ NG  EITLLGQNVN+  GKGL+ E+ TF+ LL  ++EI GL R
Sbjct: 191 RSRRPEDIENEIKELVSNGYKEITLLGQNVNS-YGKGLE-EEITFAQLLRRINEIGGLER 248

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LR+ TSHP+D++  ++ A  D D L   +HLPVQSGS++IL+ MNR +   +Y ++  +I
Sbjct: 249 LRFMTSHPKDLTLDVVYAIRDCDKLCEQIHLPVQSGSNKILQKMNRHYNKEQYLELAKKI 308

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R   PD+  S+D IVGFPGET++DF  T++LV ++ Y  AF+F YS R  TP   M  Q+
Sbjct: 309 REEIPDVTFSTDIIVGFPGETEEDFEETINLVKEVRYDAAFTFIYSRRNHTPADKMENQI 368

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441
            ++VK +R   L   + E  V  N A  G+I EVL+E   K    KL GR+   + V  +
Sbjct: 369 PDDVKHDRFNRLVAAVNEGIVVGNKAAEGKIYEVLVEGTSKNNENKLTGRTRNAKLVNFD 428

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                IG ++KV+I + K  +L GE+V
Sbjct: 429 GCKEMIGKLVKVKIIEAKSFSLVGEVV 455


>gi|89092053|ref|ZP_01165008.1| hypothetical protein MED92_07796 [Oceanospirillum sp. MED92]
 gi|89083788|gb|EAR63005.1| hypothetical protein MED92_07796 [Oceanospirillum sp. MED92]
          Length = 455

 Score =  456 bits (1174), Expect = e-126,   Method: Composition-based stats.
 Identities = 200/449 (44%), Positives = 284/449 (63%), Gaps = 13/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++ F+K++GCQMN YDS RM D+   S   E     DDAD+++LNTC IREKA EKV+
Sbjct: 1   MAKKLFIKTHGCQMNEYDSARMADLLGESHDLELTEDADDADVLLLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL- 140
             LGR R LK +      +L + V GCVA  EG+ IL+R+P V+++ GPQT +RLPE++ 
Sbjct: 61  HQLGRWRKLKEN----NPNLKIGVGGCVASQEGDNILKRAPYVDMIFGPQTLHRLPEMIT 116

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           E    G  +VD  +   +KF+ L        +  G  AF+++ EGC K+CTFCVVPYTRG
Sbjct: 117 ETGAGGVGIVDVSFPEIEKFDHLP-----APKVEGAEAFVSVMEGCSKYCTFCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR L  V+ E  +L + GV E+ LLGQNVNA+ G+  DG+    ++L+  ++ ++G+
Sbjct: 172 EEVSRPLDDVITECVELAEQGVREVNLLGQNVNAYLGETHDGDTADLAELIRCVAAVEGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+TTSHP + +D LI+A+ D+  L+ +LHLPVQSGSD+IL +M R HTA EY+  I 
Sbjct: 232 DRIRFTTSHPVEFTDSLIEAYEDVPELVSFLHLPVQSGSDKILMAMKRGHTALEYKSKIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           RIR  RPDI ISSDFI+GFP ETD DF ATM L++ IG+  ++SF YS R GTP S++ +
Sbjct: 292 RIRKARPDIEISSDFIIGFPNETDTDFAATMKLIEDIGFDNSYSFIYSRRPGTPASDLPD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVV 439
            +DE  K ERL  LQ ++ +     +   VG    +L+  +  K+ G L GR+   + V 
Sbjct: 352 NIDEETKKERLKILQSRIIQNAQLISRRMVGSTQTILVNGYSKKDPGLLSGRTENNRVVN 411

Query: 440 LNSKN-HNIGDIIKVRITDVKISTLYGEL 467
               N   IG    V I +   ++L G+L
Sbjct: 412 FRCDNPDLIGHFADVEIVEAYANSLVGKL 440


>gi|332976877|gb|EGK13699.1| tRNA-I(6)A37 modification enzyme MiaB [Desmospora sp. 8437]
          Length = 495

 Score =  456 bits (1173), Expect = e-126,   Method: Composition-based stats.
 Identities = 176/448 (39%), Positives = 263/448 (58%), Gaps = 15/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +++ +K+YGCQMNV+DS  +  +    GY      ++A +I++NTC IRE A +KV+  +
Sbjct: 49  KKYLIKTYGCQMNVHDSETIAGILELMGYRPTEVEEEAAVILINTCAIRENAEDKVFGEI 108

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           GR++ LK        +L++ + GC++Q E     IL++   V+++ G    +RLP LL  
Sbjct: 109 GRLKTLKTE----KPELVLGMCGCMSQEESVVNRILQKHQHVDLIFGTHNIHRLPHLLRE 164

Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           A   K +V   +S E D  E L  V     R+ G+ A++ I  GCDKFCT+C+VPYTRG 
Sbjct: 165 ALMSKEMVVEVWSKEGDIVENLPKV-----REDGLKAWVNIMYGCDKFCTYCIVPYTRGK 219

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR    V+ E R L   G  E+TLLGQNVNA  GK  +     F DL+  + +I G+ 
Sbjct: 220 ERSRRPEDVLAEIRDLARKGYREVTLLGQNVNA-YGKDFEDRDYRFGDLMEDVRKI-GIP 277

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHPRD  D LI+       L+ ++HLP QSG++ ILK M R++T   + +++ +
Sbjct: 278 RVRFTTSHPRDFDDHLIEVLARRGNLVEHIHLPAQSGNNAILKIMARKYTRERFLELVAK 337

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I++  PD+ +++D IVG+PGET++ F  T+ L+ ++ +  AF+F YSPR GTP + M + 
Sbjct: 338 IKAAIPDVVLTTDIIVGYPGETEEQFEDTLSLMREVEFDSAFTFIYSPREGTPAAKMKDD 397

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVL 440
           V  NVK ERL  L     E     N A   Q++EVL+E    K+   L GR+   + V  
Sbjct: 398 VPMNVKKERLYRLNHLQDEISRKKNLALKDQVVEVLVEGESKKDPNVLSGRTRTNKLVNF 457

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
               H IG+  +VRIT+ +  TL GE V
Sbjct: 458 QGPKHLIGEFAQVRITEPRTWTLKGEWV 485


>gi|255693332|ref|ZP_05417007.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacteroides finegoldii
           DSM 17565]
 gi|260620909|gb|EEX43780.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacteroides finegoldii
           DSM 17565]
          Length = 455

 Score =  456 bits (1173), Expect = e-126,   Method: Composition-based stats.
 Identities = 161/446 (36%), Positives = 255/446 (57%), Gaps = 10/446 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F+++YGCQMNV DS  +  +    GY    ++++AD + +NTC IR+ A +K+ + L
Sbjct: 18  KKLFIETYGCQMNVADSEVIASVMQMAGYSVAETLEEADAVFMNTCSIRDNAEQKILNRL 77

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
               +L     K+   L+V V GC+A+   ++++     V++VVGP  Y  LP+L+    
Sbjct: 78  EFFHSL----KKKKKHLIVGVLGCMAERVKDDLITNH-HVDLVVGPDAYLTLPDLIAAVE 132

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G++ ++ + S  + +  +       N   G   F++I  GC+ FCT+C+VPYTRG E S
Sbjct: 133 AGEKAINVELSTTETYRDVIPSRICGNHISG---FVSIMRGCNNFCTYCIVPYTRGRERS 189

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R +  +++E   L+  G  E+TLLGQNVN++R +   GE  TF  LL +++E    VR+R
Sbjct: 190 RDVESILNEVADLVAKGYKEVTLLGQNVNSYRFEKPTGETVTFPMLLRTVAEAAPGVRIR 249

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +TTSHP+DMSD  ++    +  +  ++HLPVQSGS RILK MNR++T   Y   +  I+ 
Sbjct: 250 FTTSHPKDMSDETLEVIAQVPNVCKHIHLPVQSGSSRILKLMNRKYTREWYLDRVAAIKR 309

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN-MLEQVD 383
           + PD  +++D   GF  ET++D   ++ L+++ GY  AF FKYS R GT  S  + + V 
Sbjct: 310 IIPDCGLTTDIFSGFHSETEEDHAMSLSLMEECGYDAAFMFKYSERPGTYASKHLEDNVP 369

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNS 442
           E VK  RL  +           N  C+G+  EVL+E   K    +L GR+   + VV + 
Sbjct: 370 EEVKVRRLNEIIALQNRLSAESNQRCIGKTYEVLVEGVSKRSRDQLFGRTEQNRVVVFDR 429

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
             H +GD + VRIT+   +TL GE +
Sbjct: 430 GTHRVGDFVNVRITEASSATLKGEEI 455


>gi|160884905|ref|ZP_02065908.1| hypothetical protein BACOVA_02895 [Bacteroides ovatus ATCC 8483]
 gi|156109940|gb|EDO11685.1| hypothetical protein BACOVA_02895 [Bacteroides ovatus ATCC 8483]
          Length = 457

 Score =  456 bits (1173), Expect = e-126,   Method: Composition-based stats.
 Identities = 160/446 (35%), Positives = 255/446 (57%), Gaps = 10/446 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F+++YGCQMNV DS  +  +    GY    ++++AD + +NTC IR+ A +K+ + L
Sbjct: 20  KKLFIETYGCQMNVADSEVIASVMQMAGYSVAETLEEADAVFMNTCSIRDNAEQKILNRL 79

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
               +LK  + +    L+V V GC+A+   ++++     V++VVGP  Y  LP+L+    
Sbjct: 80  EFFHSLKKKKKR----LIVGVLGCMAERVKDDLITNH-HVDLVVGPDAYLTLPDLIAAVE 134

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G++ ++ + S  + +  +       N   G   F++I  GC+ FCT+C+VPYTRG E S
Sbjct: 135 TGEKAINVELSTTETYRDVIPSRICGNHISG---FVSIMRGCNNFCTYCIVPYTRGRERS 191

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R +  +++E   L+  G  E+TLLGQNVN++R +   GE  TF  LL +++E    VR+R
Sbjct: 192 RDVESILNEVADLVAKGYKEVTLLGQNVNSYRFERPTGEVVTFPMLLRTVAEAAPGVRIR 251

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +TTSHP+DMSD  ++    +  +  ++HLPVQSGS RILK MNR++T   Y   +  I+ 
Sbjct: 252 FTTSHPKDMSDETLEVIAQVPNVCKHIHLPVQSGSSRILKLMNRKYTREWYLDRVAAIKR 311

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN-MLEQVD 383
           + PD  +++D   GF  ET++D   ++ L++  GY  AF FKYS R GT  S  + + V 
Sbjct: 312 IIPDCGLTTDIFSGFHSETEEDHAMSLSLMEACGYDAAFMFKYSERPGTYASKHLEDNVP 371

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNS 442
           E VK  RL  +           N  C+G+  EVL+E   K    +L GR+   + VV + 
Sbjct: 372 EEVKVRRLNEIIALQNRLSAESNQRCIGKTYEVLVEGVSKRSRDQLFGRTEQNRVVVFDR 431

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
             H +GD + VR+T+   +TL GE +
Sbjct: 432 GTHRVGDFVNVRVTEASSATLKGEEI 457


>gi|304316819|ref|YP_003851964.1| RNA modification enzyme, MiaB family [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778321|gb|ADL68880.1| RNA modification enzyme, MiaB family [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 471

 Score =  456 bits (1173), Expect = e-126,   Method: Composition-based stats.
 Identities = 173/446 (38%), Positives = 268/446 (60%), Gaps = 13/446 (2%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +F +++YGCQMNV+DS ++  M    GY   ++++DAD+I+ NTC +RE A  +++  + 
Sbjct: 34  KFHIETYGCQMNVHDSEKLAGMLTEMGYTHTDNLEDADVILFNTCCVREHAEIRIFGRVS 93

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +++ LK        ++++ + GC+ Q +   E I    P +++V G    ++ PELL+ +
Sbjct: 94  QLKELKQR----KPNIILGICGCMMQEKEVVEAIKNDYPYIDIVFGTHNLFKFPELLQES 149

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
                 +   +          + D    R  G+ A++ I  GC+ FCT+C+VPY RG E 
Sbjct: 150 LNSDTTIIDIWDDNKSI----VEDIPIRRAEGLKAWVNIIYGCNNFCTYCIVPYVRGREK 205

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR    +++E + L + G  EITLLGQNVN+  G  L   K  F+DLLY +++I G+ R+
Sbjct: 206 SREPHDILNEIKSLANEGFKEITLLGQNVNS-YGNDLP-IKIDFADLLYMINDIDGIERI 263

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+ TSHP+D+SD LI A  DLD L  +LHLPVQSGS++IL+ MNR+++   Y +II+++R
Sbjct: 264 RFMTSHPKDISDKLIFAMRDLDKLCEHLHLPVQSGSNKILERMNRKYSRERYLEIINKLR 323

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              P IAI++D IVGFPGETD DF+ T+DLV ++ Y  A++F YS R GTP   M  QVD
Sbjct: 324 DNIPGIAITTDIIVGFPGETDKDFQDTLDLVKEVRYDSAYTFIYSKRKGTPAEKMSNQVD 383

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVLNS 442
           E++K +RL  L        +  N+   G+++EVL+E   K   + L GR+   + V   +
Sbjct: 384 EDIKHKRLEELINLQNIISIEKNNEMKGKVVEVLVEGTSKRDSEKLTGRTRTNKIVHFKA 443

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
           K   IG  + V+I D K  T+ GEL+
Sbjct: 444 KPELIGKFVNVKIIDTKAWTMQGELI 469


>gi|303250593|ref|ZP_07336790.1| bifunctional enzyme involved in thiolation andmethylation of tRNA
           [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
 gi|303253077|ref|ZP_07339227.1| bifunctional enzyme involved in thiolation andmethylation of tRNA
           [Actinobacillus pleuropneumoniae serovar 2 str. 4226]
 gi|302648062|gb|EFL78268.1| bifunctional enzyme involved in thiolation andmethylation of tRNA
           [Actinobacillus pleuropneumoniae serovar 2 str. 4226]
 gi|302650581|gb|EFL80740.1| bifunctional enzyme involved in thiolation andmethylation of tRNA
           [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
          Length = 455

 Score =  455 bits (1172), Expect = e-126,   Method: Composition-based stats.
 Identities = 196/428 (45%), Positives = 282/428 (65%), Gaps = 12/428 (2%)

Query: 44  MEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLL 102
           M D+  S  G E  +  ++AD+++LNTC IREKA EKV+S LGR +N K    K+  DL+
Sbjct: 1   MADLLNSTHGLELTDKPEEADVLLLNTCSIREKAQEKVFSQLGRWKNWK----KDKPDLI 56

Query: 103 VVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR-VVDTDYSVEDKFE 161
           + V GCVA  EGE I  R+P V++V GPQT +RLPE++ + R G R +VD  +   +KF+
Sbjct: 57  IGVGGCVASQEGEHIRDRAPFVDIVFGPQTLHRLPEMINKIRGGDRAIVDISFPEIEKFD 116

Query: 162 RLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNG 221
           RL        R  G TAF++I EGC+K+C+FCVVPYTRG E+SR +  V+ E  +L + G
Sbjct: 117 RLP-----EPRAEGPTAFVSIMEGCNKYCSFCVVPYTRGEEVSRPVDDVLFEIAQLAEQG 171

Query: 222 VCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAH 281
           V E+ LLGQNVNA+RG+  DG  CTF++LL  ++ I G+ R+RYTTSHP + +D +I+ +
Sbjct: 172 VREVNLLGQNVNAYRGETFDGGICTFAELLRLVAAIDGIDRVRYTTSHPIEFTDDIIEVY 231

Query: 282 GDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPG 341
            D   L+ +LHLP+QSG+DR+L  M R HTA EY+ II ++R VRP+I ISSDFIVGFPG
Sbjct: 232 RDTPELVSFLHLPIQSGADRVLTMMKRNHTALEYKAIIRKLREVRPNIQISSDFIVGFPG 291

Query: 342 ETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQ 401
           ET +DF  TM +++++ +  +FSF YS R GTP +++ + + E  K  RL  LQ+++  Q
Sbjct: 292 ETAEDFEQTMKVIEQVNFDMSFSFIYSARPGTPAADLPDDISEEEKKARLARLQQRINHQ 351

Query: 402 QVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKI 460
            + F+ A +G    VL+E   K+   +L GR+   + V        IG  + ++ITDV  
Sbjct: 352 AMQFSRAMLGTEQRVLVEGPSKKDIMELTGRTENNRIVNFQGTPDMIGKFVDIKITDVYT 411

Query: 461 STLYGELV 468
           ++L GE+V
Sbjct: 412 NSLRGEVV 419


>gi|226951972|ref|ZP_03822436.1| tRNA-i(6)A37 modification enzyme MiaB [Acinetobacter sp. ATCC
           27244]
 gi|294649236|ref|ZP_06726674.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Acinetobacter
           haemolyticus ATCC 19194]
 gi|226837310|gb|EEH69693.1| tRNA-i(6)A37 modification enzyme MiaB [Acinetobacter sp. ATCC
           27244]
 gi|292824903|gb|EFF83668.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Acinetobacter
           haemolyticus ATCC 19194]
          Length = 483

 Score =  455 bits (1172), Expect = e-126,   Method: Composition-based stats.
 Identities = 197/472 (41%), Positives = 294/472 (62%), Gaps = 21/472 (4%)

Query: 9   GVAHMVSQIVDQC-IVPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIV 66
              + V+Q +    +  ++ ++++ GCQMN YDS RM D+   S GY   ++ ++AD+++
Sbjct: 14  ASENTVTQPMHTADVSMKKLYIETQGCQMNEYDSHRMADLLGDSHGYVLTDNPNEADILL 73

Query: 67  LNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNV 126
           +NTC IREKA EKV+S LGR R LK        DL++ V GCVA  EG+ I +R+P V++
Sbjct: 74  MNTCSIREKAQEKVFSGLGRWRKLKEK----NPDLVIGVGGCVASQEGDNIQKRAPYVDM 129

Query: 127 VVGPQTYYRLPELLERA--------RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTA 178
           V GPQT +RLP++L++         +   ++VD  +   +KF+ L        R  G  A
Sbjct: 130 VFGPQTLHRLPQMLDQHQAQVEKPKKEKIKLVDISFPDIEKFDFLP-----EPRVEGFKA 184

Query: 179 FLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK 238
           F++I EGC K+C+FCVVPYTRG E+SR L  V+ E   L + GV EI+LLGQNVN +RG+
Sbjct: 185 FVSIMEGCSKYCSFCVVPYTRGEEVSRPLDDVLAEIAGLAEKGVREISLLGQNVNGYRGE 244

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
             +G  CTF +LL  ++EI G+ RLRYTTSHP + SD LI+ + DL  ++ +LHLPVQSG
Sbjct: 245 TFEGGICTFPELLRLVAEIPGIGRLRYTTSHPLEFSDELIQCYRDLPQMVSHLHLPVQSG 304

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           S+ +L++M R HT   Y   I ++R VRPD+ +SSDFI+GFPGETD  F  T+  +  + 
Sbjct: 305 SNDVLQAMKRNHTIDVYIDKIAKLRKVRPDMHLSSDFIIGFPGETDQHFAETLQFIKDLD 364

Query: 359 YAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI 418
           +  ++SF YS R GTP S++ +   E VK +RL  +Q+ ++   +   DA +G+I  VLI
Sbjct: 365 FDHSYSFVYSKRPGTPASDLPDDTPEQVKKDRLAQVQEVIKRSSIDKTDAMLGKIERVLI 424

Query: 419 EKHG-KEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKI-STLYGELV 468
           EK   K+   L+G +   + V        +G   ++ IT++K  + +YGEL+
Sbjct: 425 EKVSDKDPNILIGTADNTRLVTFIGDAAWVGRFAEIEITEIKTLNLVYGELL 476


>gi|262280174|ref|ZP_06057958.1| tRNA-I(6)A37 thiotransferase [Acinetobacter calcoaceticus RUH2202]
 gi|262257952|gb|EEY76686.1| tRNA-I(6)A37 thiotransferase [Acinetobacter calcoaceticus RUH2202]
          Length = 483

 Score =  455 bits (1172), Expect = e-126,   Method: Composition-based stats.
 Identities = 197/471 (41%), Positives = 294/471 (62%), Gaps = 22/471 (4%)

Query: 9   GVAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVL 67
                 +   D  I  ++ ++++ GCQMN YDS RM D+   S GY   ++ ++AD++++
Sbjct: 17  NTVTQPTHTTDVSI--KKLYIETQGCQMNEYDSHRMADLLGDSHGYILTSNPNEADILLM 74

Query: 68  NTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVV 127
           NTC IREKA EKV+S LGR R LK+       DL++ V GCVA  EG+ I +R+P V+++
Sbjct: 75  NTCSIREKAQEKVFSELGRWRKLKDK----NPDLVIGVGGCVASQEGDNIQKRAPYVDMI 130

Query: 128 VGPQTYYRLPELLERA--------RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAF 179
            GPQT +RLP++L++         +   ++VD  +   +KF+ L        R  G  AF
Sbjct: 131 FGPQTLHRLPQMLDQHNAQVEKPKKDKIKLVDISFPDIEKFDFLP-----EPRVEGFKAF 185

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
           ++I EGC K+C+FCVVPYTRG E+SR L  V+ E   L + GV EI+LLGQNVN +RG+ 
Sbjct: 186 VSIMEGCSKYCSFCVVPYTRGEEVSRPLDDVLAEIAGLAEKGVREISLLGQNVNGYRGET 245

Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
            +G  CTF +LL  ++EI G+ RLRYTTSHP + SD LI+ + DL  ++ +LHLPVQSGS
Sbjct: 246 FEGGICTFPELLRLVAEIPGIGRLRYTTSHPLEFSDELIQCYEDLPQMVSHLHLPVQSGS 305

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
           + +LK+M R HT   Y   I ++R +RPD+ +SSDFI+GFPGETD++F  T+  +  + +
Sbjct: 306 NDVLKAMKRNHTIDVYIDKIAKLRKIRPDMHLSSDFIIGFPGETDENFAETLQFIKDLDF 365

Query: 360 AQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419
             ++SF YS R GTP S++ +   E VK ERL  +QK +++  +   DA +G+I  VLIE
Sbjct: 366 DHSYSFVYSKRPGTPASDLPDTTPEQVKKERLAQVQKVIKQSSIEKTDAMLGKIERVLIE 425

Query: 420 KHGK-EKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKI-STLYGELV 468
           K    +   L+G +   + V        +G   ++ IT++K  + +YGEL+
Sbjct: 426 KVSDQDPNILIGTADNTRLVTFVGDATWVGRFAEIEITEIKTLNFVYGELL 476


>gi|296447885|ref|ZP_06889796.1| RNA modification enzyme, MiaB family [Methylosinus trichosporium
           OB3b]
 gi|296254626|gb|EFH01742.1| RNA modification enzyme, MiaB family [Methylosinus trichosporium
           OB3b]
          Length = 437

 Score =  455 bits (1172), Expect = e-126,   Method: Composition-based stats.
 Identities = 240/432 (55%), Positives = 310/432 (71%), Gaps = 4/432 (0%)

Query: 36  MNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRI 95
           MNVYD+ RM D+   +GY    S DDADL+VLNTCHIREKA +KVYS LGR+  LK+ R 
Sbjct: 1   MNVYDAERMTDLLAGRGYGEAASEDDADLVVLNTCHIREKATDKVYSELGRLARLKSERG 60

Query: 96  KEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYS 155
            EG D  +VVAGCVAQAEG E+LRR   V++VVGPQ+Y+RL ELL RA  G+R+ +TD++
Sbjct: 61  AEGRDFRIVVAGCVAQAEGVEVLRRQRAVDLVVGPQSYHRLDELLTRAEAGERIAETDFA 120

Query: 156 VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEAR 215
           V DKF  L          RGVTAF+T QEGCDKFC+FCVVPYTRG E+SRS++++V EA 
Sbjct: 121 VADKFAALRRAPIP----RGVTAFVTAQEGCDKFCSFCVVPYTRGAEVSRSVAEIVAEAE 176

Query: 216 KLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSD 275
            L   GV EIT++GQNVNA+RG+  +G   T   LL  LS I+G+ RLRYTTSHP DM  
Sbjct: 177 ALAAAGVREITIIGQNVNAYRGEDENGAPATLPRLLARLSRIEGVTRLRYTTSHPIDMDQ 236

Query: 276 CLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDF 335
            LI AH  L +L P++HLPVQSGS+R+L++MNRRH A  Y  I+ R+R+ RPDIA+SSDF
Sbjct: 237 ELIDAHASLPMLAPFVHLPVQSGSNRVLRAMNRRHDADFYLDIVARLRAARPDIALSSDF 296

Query: 336 IVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQ 395
           IVGFPGETD DF AT+ L+  +G+A +FSFKYSPR GTPG+   +Q+ E+VK+ERL  LQ
Sbjct: 297 IVGFPGETDADFEATLALIRAVGFASSFSFKYSPRPGTPGAERDDQIAEDVKSERLAALQ 356

Query: 396 KKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRI 455
             L +Q+ +FN A VG+ +E L EK G+  G++ G+SP++Q+V  +     IG I+ V I
Sbjct: 357 ALLEQQRQAFNAATVGRTVETLFEKPGRHGGQIAGKSPYMQAVHASGGPELIGSILPVTI 416

Query: 456 TDVKISTLYGEL 467
                ++L G +
Sbjct: 417 VAAGSNSLAGTI 428


>gi|260557080|ref|ZP_05829297.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Acinetobacter baumannii
           ATCC 19606]
 gi|260409686|gb|EEX02987.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Acinetobacter baumannii
           ATCC 19606]
          Length = 483

 Score =  455 bits (1172), Expect = e-126,   Method: Composition-based stats.
 Identities = 198/471 (42%), Positives = 294/471 (62%), Gaps = 22/471 (4%)

Query: 9   GVAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVL 67
                 +   D  I  ++ ++++ GCQMN YDS RM D+   S GY   N+ ++AD++++
Sbjct: 17  NTVTQPTHTTDVSI--KKLYIETQGCQMNEYDSHRMADLLGDSHGYMLTNNPNEADILLM 74

Query: 68  NTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVV 127
           NTC IREKA EKV+S LGR R LK        DL++ V GCVA  EG+ I +R+P V+++
Sbjct: 75  NTCSIREKAQEKVFSELGRWRKLKEQ----NPDLVIGVGGCVASQEGDNIQKRAPYVDMI 130

Query: 128 VGPQTYYRLPELLERA--------RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAF 179
            GPQT +RLP++L++         +   ++VD  +   +KF+ L        R  G  AF
Sbjct: 131 FGPQTLHRLPQMLDQHHAQVEKPKKEKIKLVDISFPDIEKFDFLP-----EPRVEGFKAF 185

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
           ++I EGC K+C+FCVVPYTRG E+SR L  V+ E   L + GV EI+LLGQNVN +RG+ 
Sbjct: 186 VSIMEGCSKYCSFCVVPYTRGEEVSRPLDDVLAEIAGLAEKGVREISLLGQNVNGYRGET 245

Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
            +G  CTF +LL  ++EI G+ RLRYTTSHP + SD LI+ + DL  ++ +LHLPVQSGS
Sbjct: 246 FEGGICTFPELLRLVAEIPGIGRLRYTTSHPLEFSDELIQCYEDLPQMVSHLHLPVQSGS 305

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
           + +LK+M R HT   Y   I ++R +RPD+ +SSDFI+GFPGETD++F  T+  +  + +
Sbjct: 306 NDVLKAMKRNHTIDVYIDKIAKLRKIRPDMHLSSDFIIGFPGETDENFAETLQFIKDLDF 365

Query: 360 AQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419
             ++SF YS R GTP S++ +   E+VK ERL  +Q+ +++  +   DA +G+I  VLIE
Sbjct: 366 DHSYSFVYSKRPGTPASDLPDTTPEHVKKERLAQVQQVIKQSSIEKTDAMLGKIERVLIE 425

Query: 420 KHGK-EKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKI-STLYGELV 468
           K    +   LVG +   + V        +G   ++ IT++K  + +YGEL+
Sbjct: 426 KVSDQDPNILVGTADNTRLVTFVGDASWVGRFAEIEITEIKTLNLVYGELL 476


>gi|295696236|ref|YP_003589474.1| RNA modification enzyme, MiaB family [Bacillus tusciae DSM 2912]
 gi|295411838|gb|ADG06330.1| RNA modification enzyme, MiaB family [Bacillus tusciae DSM 2912]
          Length = 484

 Score =  455 bits (1172), Expect = e-126,   Method: Composition-based stats.
 Identities = 171/456 (37%), Positives = 272/456 (59%), Gaps = 14/456 (3%)

Query: 13  MVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHI 72
            ++Q V    V +R+++++YGCQMN +DS  M  M    GY   ++ ++ADLI+ NTC +
Sbjct: 29  AMAQAVPAVGVGKRYWIRTYGCQMNEHDSEIMAGMLQEMGYRPASAPEEADLILFNTCAV 88

Query: 73  REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRS--PIVNVVVGP 130
           RE A +KV+  +GRI+ LK    +   +LL+ + GC+AQ E      R   P V++V G 
Sbjct: 89  RENAEDKVFGEIGRIKPLK----RRHPELLLGLCGCMAQEEKVRQFVRDTFPHVDLVFGT 144

Query: 131 QTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190
              ++LPEL+ +A   +   +T ++V D+  ++ + +    R+ GV A++ IQ GC+K+C
Sbjct: 145 HNLHQLPELVVQAMASQ---ETVFAVWDRPGQV-VENLPKLRQDGVKAWVNIQYGCNKYC 200

Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDL 250
           T+C+VP+TRG E SR    VV E ++L + G+ E+TLLGQNVN +   GLD     F+DL
Sbjct: 201 TYCIVPFTRGRERSRLPEDVVAEVKQLAEEGIREVTLLGQNVNDY---GLDLGDVDFADL 257

Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
           L  ++ I G+ R+R+TTS+P + +D LI      + +  ++HLPVQSG++RILK MNR +
Sbjct: 258 LQQVARIPGIERVRFTTSNPWNFTDKLIDVIAAEEAICEHIHLPVQSGNNRILKRMNRGY 317

Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370
           T   Y Q+++RIR   P +++++D IVGFPGET+++F+ T+DLV  + +  AF+F YS R
Sbjct: 318 TRETYLQLVERIRDRIPGVSLTTDIIVGFPGETEEEFQDTLDLVRTVQFDNAFTFLYSRR 377

Query: 371 LGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LV 429
            GT  + M +      K +RL  L +        +++  VG+  +VL+E   K   + L 
Sbjct: 378 QGTAAARMKDDTSLEAKKDRLRRLNELQAAISRRYHEQLVGKTEDVLVEGESKTNPEILA 437

Query: 430 GRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYG 465
           GR+   + V+L      IG  I V+I   +   L G
Sbjct: 438 GRTRTNRLVLLQGSRELIGRTIPVQIVGAQTWLLRG 473


>gi|198282884|ref|YP_002219205.1| (dimethylallyl)adenosine tRNA methylthiotransferase
           [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218665819|ref|YP_002425085.1| tRNA-i(6)A37 modification enzyme MiaB [Acidithiobacillus
           ferrooxidans ATCC 23270]
 gi|229890414|sp|B7J5B2|MIAB_ACIF2 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|229890415|sp|B5ENG4|MIAB_ACIF5 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|198247405|gb|ACH82998.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218518032|gb|ACK78618.1| tRNA-i(6)A37 modification enzyme MiaB [Acidithiobacillus
           ferrooxidans ATCC 23270]
          Length = 451

 Score =  455 bits (1172), Expect = e-126,   Method: Composition-based stats.
 Identities = 212/448 (47%), Positives = 286/448 (63%), Gaps = 11/448 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           Q  ++K+YGCQMN YDS RM D    S G   V+    AD+++LNTC IREKA +KV++ 
Sbjct: 2   QNLYIKTYGCQMNEYDSERMADTLAVSHGLRLVDDPVLADVLLLNTCSIREKAEDKVFTQ 61

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LG  R  K  R     ++++ V GCVA  EGE + RR+P V++V GPQT +RLP+LL+  
Sbjct: 62  LGFWRPFKERR----PEVVIGVGGCVASQEGERLRRRAPYVDLVFGPQTLHRLPDLLDAC 117

Query: 144 RFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
              +R  VD  + + +KF+ L    G    + G TAF+TIQEGCDKFCTFCVVP+TRG E
Sbjct: 118 LAERRPQVDIAFPMLEKFDHLPQRPG----RDGATAFVTIQEGCDKFCTFCVVPHTRGRE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SRS+  ++ E R L++ GV EITLLGQNVNA+RG      +   +DLL  L+ I GL+R
Sbjct: 174 YSRSMPDILREVRALVEQGVREITLLGQNVNAYRGATGLVGEGGLADLLERLARIPGLLR 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LRYTTSHP ++ D LI AHG + +L P+LHLPVQSGSDRIL+ M+R+HT  +Y   +DR+
Sbjct: 234 LRYTTSHPANLDDELIAAHGSIGILAPHLHLPVQSGSDRILRRMHRKHTVGQYLDKVDRL 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+ RP I ISSDFIVGFPGETD DF ATM+L+D + + Q+FSFKYS R  TP   + + V
Sbjct: 294 RAARPGIQISSDFIVGFPGETDADFAATMELIDAVRFDQSFSFKYSQRPNTPALKLKDSV 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVLN 441
            E VK +RL  LQ ++      +  A VG    VLI    +   + L G++   ++V L 
Sbjct: 354 PEAVKEDRLAVLQGRINGLAQGYAQALVGTQQAVLITGPSRRDAQELTGKTACNRAVNLA 413

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELVV 469
                +G ++ V IT    ++L G   +
Sbjct: 414 GSMDWVGQMLDVEITAALPNSLRGRAAL 441


>gi|187935420|ref|YP_001886001.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Clostridium botulinum B
           str. Eklund 17B]
 gi|229890485|sp|B2TIA8|MIAB_CLOBB RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|187723573|gb|ACD24794.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Clostridium botulinum B
           str. Eklund 17B]
          Length = 456

 Score =  455 bits (1172), Expect = e-126,   Method: Composition-based stats.
 Identities = 184/447 (41%), Positives = 269/447 (60%), Gaps = 13/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + FF++++GCQMN  DS ++  M  SQGYE   + D+A +++ NTC +RE A  KV+  L
Sbjct: 19  KHFFIETWGCQMNEEDSEKLSGMLKSQGYEETENRDEASIVIFNTCCVRENAENKVFGNL 78

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           GR++N K        +L++ + GC+ Q +G  +EIL R P V+++ G    Y+ PE L R
Sbjct: 79  GRLKNQKEK----NPNLIIALCGCMMQQKGMADEILSRFPYVDIIFGTHNAYKFPEYLHR 134

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            +     V   +  E +      +D    RK  V AF+TI  GC+ FCT+CVVPY RG E
Sbjct: 135 VQVEGVQVKEIFDKETEIVEGVPID----RKSNVKAFVTIMYGCNNFCTYCVVPYVRGRE 190

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR    + +E ++L+ +G  EITLLGQNVN+  GKGL+ E+ TF+ LL  ++EI GL R
Sbjct: 191 RSRRPEDIENEIKELVSSGYKEITLLGQNVNS-YGKGLE-EEITFAQLLRRINEIDGLER 248

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LR+ TSHP+D++  ++ A  D D L   +HLPVQSGS+ IL+ MNR +   +Y ++  +I
Sbjct: 249 LRFMTSHPKDLTLDVVYAIRDCDKLCEQIHLPVQSGSNEILQKMNRHYNKEQYLELAKKI 308

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R   PD+  S+D IVGFPGET++DF  T++LV ++ Y  AF+F YS R  TP   M  Q+
Sbjct: 309 REEIPDVTFSTDIIVGFPGETEEDFEETINLVKEVRYDAAFTFIYSRRNHTPADKMENQI 368

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441
            ++VK +R   L   + E  V  N A  G+I EVL+E   K    KL GR+   + V  +
Sbjct: 369 PDDVKHDRFNRLVAAVNEGIVVGNKAAEGKIYEVLVEGTSKNNENKLTGRTRNAKLVNFD 428

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                IG ++KV+I + K  +L GE+V
Sbjct: 429 GCKEMIGKLVKVKIIEAKSFSLVGEVV 455


>gi|253997231|ref|YP_003049295.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Methylotenera mobilis
           JLW8]
 gi|253983910|gb|ACT48768.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Methylotenera mobilis
           JLW8]
          Length = 442

 Score =  455 bits (1172), Expect = e-126,   Method: Composition-based stats.
 Identities = 194/450 (43%), Positives = 280/450 (62%), Gaps = 14/450 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
            P++ F+K++GCQMN YDS RM DM  +  G     S DDAD+I+LNTC +REKA +KV+
Sbjct: 3   TPKKVFIKTFGCQMNEYDSSRMADMLSASDGMVETQSPDDADVILLNTCSVREKAEDKVF 62

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S LGR   LK        +L++ V GCVA  EG+ I++R+P V+VV GPQT +RLPE+++
Sbjct: 63  SHLGRFIPLKEK----NPNLVIGVGGCVASQEGDNIIKRAPYVDVVFGPQTLHRLPEMIK 118

Query: 142 -RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
            +   G   VD  +   +KF+ L        R  GV+AFL+I EGC K+C+FCVVPYTRG
Sbjct: 119 SKQDSGTSQVDVSFPEIEKFDHLPP-----PRVEGVSAFLSIMEGCSKYCSFCVVPYTRG 173

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR  + ++ EA +L + GV EITLLGQNVNA      DG +   + L+ +++EI  +
Sbjct: 174 EEVSRPFADILTEAVQLAEQGVKEITLLGQNVNA-YRTEYDGVESDLAMLIETIAEIPQI 232

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+TTSHP +M++ LI     +  L   LHLPVQ+GSDRIL +M R +TA +++ II 
Sbjct: 233 ERIRFTTSHPNEMNERLISCFATVPKLAAQLHLPVQAGSDRILMAMKRNYTALQFKSIIR 292

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++++  P++  +SDFIVGFPGE+D DF AT+ L+  +G+  +FSF YSPR GTP + + +
Sbjct: 293 KLKAANPNLTFTSDFIVGFPGESDADFEATVKLMQDVGFDASFSFLYSPRPGTPAAFLKD 352

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVV 439
              + VK  RL  LQ     Q  + ++A +G    VLIE    K+   L G++   + V 
Sbjct: 353 DTSQEVKLARLDKLQTINEAQAKAISEAMLGTTQRVLIEGASWKDASLLAGKTDNNRVVD 412

Query: 440 LNSKNHNIGDIIKVRITDVK-ISTLYGELV 468
           +      +   + V+ITDV     L GE+V
Sbjct: 413 IAGDASLVHQFVNVKITDVSNPRRLIGEIV 442


>gi|18310075|ref|NP_562009.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Clostridium perfringens
           str. 13]
 gi|110800579|ref|YP_695795.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Clostridium perfringens
           ATCC 13124]
 gi|168207484|ref|ZP_02633489.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Clostridium perfringens E
           str. JGS1987]
 gi|168214970|ref|ZP_02640595.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Clostridium perfringens
           CPE str. F4969]
 gi|168218108|ref|ZP_02643733.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Clostridium perfringens
           NCTC 8239]
 gi|169342621|ref|ZP_02629366.2| tRNA-i(6)A37 thiotransferase enzyme MiaB [Clostridium perfringens C
           str. JGS1495]
 gi|182626330|ref|ZP_02954085.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Clostridium perfringens D
           str. JGS1721]
 gi|81767470|sp|Q8XLE9|MIAB_CLOPE RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|123049876|sp|Q0TRE5|MIAB_CLOP1 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|18144754|dbj|BAB80799.1| conserved hypothetical protein [Clostridium perfringens str. 13]
 gi|110675226|gb|ABG84213.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Clostridium perfringens
           ATCC 13124]
 gi|169299263|gb|EDS81332.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Clostridium perfringens C
           str. JGS1495]
 gi|170661180|gb|EDT13863.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Clostridium perfringens E
           str. JGS1987]
 gi|170713591|gb|EDT25773.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Clostridium perfringens
           CPE str. F4969]
 gi|177908349|gb|EDT70894.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Clostridium perfringens D
           str. JGS1721]
 gi|182379874|gb|EDT77353.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Clostridium perfringens
           NCTC 8239]
          Length = 447

 Score =  455 bits (1171), Expect = e-126,   Method: Composition-based stats.
 Identities = 175/457 (38%), Positives = 277/457 (60%), Gaps = 16/457 (3%)

Query: 17  IVDQCIVPQRFF-VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREK 75
           +  +  + ++ F + +YGCQMN  DS ++  M  SQGYER  + ++A +I+ NTC +RE 
Sbjct: 1   MTLENNMDKKLFCISTYGCQMNEEDSEKLSGMLKSQGYERTENKEEASIIIFNTCCVREN 60

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTY 133
           A  KV+  LG+++ LK    K+  +L++ + GC+ Q  G  +++L+  P V+++ G    
Sbjct: 61  AENKVFGNLGQLKQLK----KKNPNLVIAICGCMMQQVGMADKVLKTFPYVDIIFGTHNA 116

Query: 134 YRLPELLERA-RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTF 192
           ++ PE L R  + G +V +     E   E L I     +RK  V AF+TI  GC+ FCT+
Sbjct: 117 HKFPEYLHRVLQEGVQVKEILNKEEGIVEGLPI-----DRKSDVKAFVTIMYGCNNFCTY 171

Query: 193 CVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLY 252
           C+VPY RG E SR    ++ E  +L+  G  EITLLGQNVN+  GKGL+ E   F+ LL 
Sbjct: 172 CIVPYVRGRERSRKSEDIIKEIEELVSQGYKEITLLGQNVNS-YGKGLE-EDIDFAGLLR 229

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
            ++E+KGL R+R+ TSHP+D+SD +I A  + D L   +HLPVQSGS RILK MNR +  
Sbjct: 230 KVNEVKGLERVRFMTSHPKDLSDDVIMAIKECDKLCEQVHLPVQSGSSRILKEMNRHYDR 289

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
             Y  ++ +I+S  PD+ +++D I+GFPGET++DF  T+ L +++GY  AF+F YS R  
Sbjct: 290 EYYLDLVKKIKSEIPDVTLTTDIIIGFPGETEEDFLDTLSLCEEVGYDSAFTFIYSRRNH 349

Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGR 431
           TP   M  Q+ +++K +R   L + + ++ V  N    G+++EVL+E   K ++ KL GR
Sbjct: 350 TPADKMENQIPDDIKHDRFNRLVEAINKKVVIKNKEYEGKVVEVLVEGPSKNDETKLTGR 409

Query: 432 SPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           +   + V        +G+++ ++I   +  +L GE+V
Sbjct: 410 TRNGKLVNFAGDEKLVGELVNLKIVRAQPFSLIGEIV 446


>gi|302391921|ref|YP_003827741.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Acetohalobium arabaticum
           DSM 5501]
 gi|302203998|gb|ADL12676.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Acetohalobium arabaticum
           DSM 5501]
          Length = 450

 Score =  455 bits (1171), Expect = e-126,   Method: Composition-based stats.
 Identities = 177/443 (39%), Positives = 265/443 (59%), Gaps = 13/443 (2%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           +++YGCQMN +DS ++  +   +GY+ +   + AD+I+LNTC IRE A  KV+  +G ++
Sbjct: 17  IETYGCQMNEHDSEKLAGVLKEKGYKLIEDTEKADVIILNTCCIRENAEVKVHGKIGYLK 76

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
             K    +E  DL++ + GC+ Q EG  E+I  + P V++V G    +   +LL+ A   
Sbjct: 77  QYK----RENPDLIIGICGCMMQQEGMAEKIKDKHPHVDIVFGTHNIHEFSQLLDAAEEE 132

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
              +   +  +++     I D    R+    A++TI  GC+ FCT+C+VPY RG E SRS
Sbjct: 133 SETIIDIWGEKEEL----IPDLPTRRETDHKAWVTIIYGCNNFCTYCIVPYVRGREKSRS 188

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
              +VDE ++L D+GV E+TLLGQNVN+  G  LD  K  F+DLL  L +I+G+ R+RY 
Sbjct: 189 SIDIVDEIKELADDGVKEVTLLGQNVNS-YGYDLD-RKIDFADLLEELDQIEGIERIRYM 246

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
           TSHPRD +  LIK   D + +  + HLP+QSGS RIL+ MNR +T  EY  +++ IRS  
Sbjct: 247 TSHPRDFTTKLIKTIADSNKVCEHFHLPIQSGSSRILEKMNRGYTQEEYLALVEEIRSYI 306

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           P  AI++DFIVGFPGE D+DF  T+ LV+++ +  A++FKYS R GTP + M  Q++E+V
Sbjct: 307 PQAAITTDFIVGFPGERDEDFAETLKLVEEVEFDMAYTFKYSQRSGTPAAEMEGQIEEDV 366

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL-VGRSPWLQSVVLNSKNH 445
           K +RL  L     +     N   +G+ ++VL +   K   +   GR+   + VV NS   
Sbjct: 367 KQKRLQKLMDIQSDISAQKNKKLLGKTVKVLGDGESKNNPERQTGRTRTNKIVVFNSDKD 426

Query: 446 NIGDIIKVRITDVKISTLYGELV 468
             G +I V+I      TL G+LV
Sbjct: 427 LTGKLINVKINKASSWTLTGDLV 449


>gi|193214302|ref|YP_001995501.1| RNA modification enzyme, MiaB family [Chloroherpeton thalassium
           ATCC 35110]
 gi|229890479|sp|B3QVA0|MIAB_CHLT3 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|193087779|gb|ACF13054.1| RNA modification enzyme, MiaB family [Chloroherpeton thalassium
           ATCC 35110]
          Length = 451

 Score =  455 bits (1171), Expect = e-126,   Method: Composition-based stats.
 Identities = 166/456 (36%), Positives = 251/456 (55%), Gaps = 14/456 (3%)

Query: 12  HMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCH 71
            M       C    R ++++YGCQMN  D+  +  +    GY    S   AD+I LNTC 
Sbjct: 5   KMAEVQSHACNQKARVYLETYGCQMNFSDTEIISSILSDAGYAIAESEQVADIIFLNTCA 64

Query: 72  IREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ 131
           +RE A +++ + L  +R LK    K+   L+V V GC+A+   E++ +   IV+++ GP 
Sbjct: 65  VRENAEQRIRNRLQNLRPLK----KQNPKLIVGVLGCMAERLREKLFQEEKIVDLIAGPD 120

Query: 132 TYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCT 191
            Y  LP LL+ A  G++  +   S+E+ +      D    RK G +AFL I  GCD  C 
Sbjct: 121 AYRTLPNLLDLAESGEKAANVMLSLEETY-----ADINPLRKNGHSAFLAIMRGCDNMCA 175

Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLL 251
           FC+VPYTRG E SR ++ ++DE ++L D G  E+TLLGQNVN++  +        F++L+
Sbjct: 176 FCIVPYTRGRERSRPMTSILDELKQLSDEGTREVTLLGQNVNSYYDENS---GTRFANLM 232

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
              S +   +R+R+TTSHP+D+S  LI    +   L  ++HLPVQSGS R+L+ MNR HT
Sbjct: 233 DKASLVNPNMRIRFTTSHPKDISSELIDVIAERKNLCEFIHLPVQSGSSRMLELMNRGHT 292

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
             +Y + I  I+S  P+ +IS+D I GF  ET+ D  AT+ L+ ++ Y  AF+F YS R 
Sbjct: 293 REDYLEKIALIKSKIPNCSISTDMISGFCTETEADHAATLSLLREVRYDYAFTFVYSVRP 352

Query: 372 GTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLV 429
            TP +  + + V ++VK  RL  +    ++         +G   EVLIE   K      +
Sbjct: 353 NTPAATRLNDDVPDDVKQRRLSEVIALQQKISAELYRNDIGNTHEVLIEGESKRSSDMWM 412

Query: 430 GRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYG 465
           GR+   + VV       +GD + V+ITD   +TL G
Sbjct: 413 GRARNNRVVVFPKNGAQVGDFVNVKITDATSATLIG 448


>gi|88705750|ref|ZP_01103460.1| Protein of unknown function, UPF0004 [Congregibacter litoralis
           KT71]
 gi|88700263|gb|EAQ97372.1| Protein of unknown function, UPF0004 [Congregibacter litoralis
           KT71]
          Length = 433

 Score =  455 bits (1171), Expect = e-126,   Method: Composition-based stats.
 Identities = 201/437 (45%), Positives = 285/437 (65%), Gaps = 13/437 (2%)

Query: 36  MNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSR 94
           MN YDS RM+D+   S G    +  DDAD+I+LNTC IREKA EKV+  LGR +NLK   
Sbjct: 1   MNEYDSARMQDLLVDSHGLVPTDREDDADVILLNTCSIREKAQEKVFHQLGRWKNLKQK- 59

Query: 95  IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-ERARFGKRVVDTD 153
                +L++ V GCVA  EG +I +R+P V++V GPQT +RLPE+L ER   G  VVD  
Sbjct: 60  ---NPELIIGVGGCVASQEGADIGKRAPYVDLVFGPQTLHRLPEMLDERRDSGNLVVDIT 116

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           +   +KF+RL           G +AF++I EGC K+C+FCVVPYTRG E+SR L  V+ E
Sbjct: 117 FPEIEKFDRLP-----EPSVDGPSAFVSIMEGCSKYCSFCVVPYTRGEEVSRPLDDVIAE 171

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
              L   GV E+ LLGQNVNA+RG+  +G+   F++LL+ ++ I G+ R+RYTTSHP + 
Sbjct: 172 VASLAGRGVREVNLLGQNVNAYRGESHEGDIVDFAELLHFVAAIPGIDRIRYTTSHPVEF 231

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
           S+ LI+A+ D+  L+ +LHLPVQ+GSDR+L +M R HT  EY+  I ++R++RP+I++SS
Sbjct: 232 SEALIQAYADIPELVDHLHLPVQAGSDRVLANMKRGHTVLEYKSKIRKLRAIRPNISLSS 291

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLC 393
           DFI+GFPGET+ DF ATM L+D IG+  +FSF YS R GTP S++ +  DE  K  RL  
Sbjct: 292 DFIIGFPGETEADFAATMKLIDDIGFDMSFSFIYSARPGTPASDLKDDTDEETKKSRLHI 351

Query: 394 LQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLNSKNH-NIGDII 451
           LQ ++ +Q  + +   VG    +L+     K+ G+L GR+   + V  ++ +H  IG  +
Sbjct: 352 LQARINQQAQAISRHMVGSRQRILVSGPSRKDPGQLQGRTENNRVVNFSADDHGLIGQFV 411

Query: 452 KVRITDVKISTLYGELV 468
            V I +   ++L GEL+
Sbjct: 412 DVTIGEALPNSLRGELI 428


>gi|288556902|ref|YP_003428837.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
           pseudofirmus OF4]
 gi|288548062|gb|ADC51945.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
           pseudofirmus OF4]
          Length = 541

 Score =  455 bits (1170), Expect = e-126,   Method: Composition-based stats.
 Identities = 169/467 (36%), Positives = 261/467 (55%), Gaps = 13/467 (2%)

Query: 5   IKLIGVAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADL 64
           ++++    ++ + +      + F +++YGCQMN +DS  M  +    G+   +   DAD+
Sbjct: 78  VQVLRPDDLIPEPMQGIGNGKTFHIRTYGCQMNTHDSENMAGLLTEMGFTETDDTKDADV 137

Query: 65  IVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSP 122
           I+LNTC IRE A  KV+  +G +++LK    KE  ++++ V GC++Q E     I+++  
Sbjct: 138 ILLNTCAIRENAENKVFGEIGHLKSLK----KERPEVILGVCGCMSQEENVVNRIMQKHQ 193

Query: 123 IVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTI 182
            ++++ G    +RLP LL+ A +GK +V   +S E       + +    R+    A++ I
Sbjct: 194 HIDIIFGTHNIHRLPSLLQNAIYGKEMVIEVWSKEGDI----VENMPRKREGKTQAWVNI 249

Query: 183 QEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG 242
             GCDKFCT+C+VPYTRG E SR    ++DE R L   G  EITLLGQNVNA  GK L  
Sbjct: 250 MYGCDKFCTYCIVPYTRGKERSRLPEDIIDEVRDLARQGYKEITLLGQNVNA-YGKDLKD 308

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
                  L+  + +I  + R+R+TTSHPRD  D LI        L+ ++HLPVQ G+  I
Sbjct: 309 RDYRLGHLMDDIHKID-IPRVRFTTSHPRDFDDHLISVLSKGGNLVEHIHLPVQHGNSDI 367

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           LK M R++T  +Y ++  +I+   P  + ++D IVGFP ET++ F  T+ LV +I +  A
Sbjct: 368 LKLMARKYTREQYVELAHKIKMAIPKASFTTDLIVGFPNETEEQFEDTLSLVREIEFDSA 427

Query: 363 FSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422
           F++ YSPR GTP + M + V   VK ERL  L   + E     N     Q++EVL+E   
Sbjct: 428 FTYIYSPREGTPAAKMKDNVPMEVKKERLARLNALVNEISAKKNLDYQDQVVEVLVEGES 487

Query: 423 -KEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            K+   L GR+   + V        IG+I+ V++ + K  +L GELV
Sbjct: 488 KKDPDVLAGRTRTNRLVNFKGPKSIIGEIVYVKVNEAKTWSLTGELV 534


>gi|262165204|ref|ZP_06032941.1| tRNA-i(6)A37 methylthiotransferase [Vibrio mimicus VM223]
 gi|262024920|gb|EEY43588.1| tRNA-i(6)A37 methylthiotransferase [Vibrio mimicus VM223]
          Length = 461

 Score =  455 bits (1170), Expect = e-126,   Method: Composition-based stats.
 Identities = 194/436 (44%), Positives = 277/436 (63%), Gaps = 12/436 (2%)

Query: 36  MNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSR 94
           MN YDS +M D+   + GYE     ++AD+++LNTC IREKA EKV+  LGR + LK+ +
Sbjct: 1   MNEYDSSKMADLLNAANGYELTEIPEEADVLLLNTCSIREKAQEKVFHQLGRWKTLKDKK 60

Query: 95  IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK-RVVDTD 153
                 +   V    A  EG+ I  R+P V+V+ GPQT +RLPE++++++  +  V+D  
Sbjct: 61  PGVVIGVGGCV----ATQEGDSIRDRAPYVDVIFGPQTLHRLPEMIKQSQISEAPVMDIS 116

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           +   +KF+RL        R  G TAF++I EGC K+CT+CVVPYTRG E+SR +  V+ E
Sbjct: 117 FPEIEKFDRLP-----EPRAEGPTAFVSIMEGCSKYCTYCVVPYTRGEEVSRPMDDVLFE 171

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
             +L + GV E+ LLGQNVNA+RG   DGE C+F++LL  ++ I G+ R+R+TTSHP + 
Sbjct: 172 IAQLAEQGVREVNLLGQNVNAYRGATHDGEICSFAELLRLVATIDGIDRIRFTTSHPLEF 231

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
           +D +I  + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II ++R  RPDI ISS
Sbjct: 232 TDDIIAVYEDTPELVSFLHLPVQSGSDRILTMMKRPHTAIEYKSIIRKLRKARPDIQISS 291

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLC 393
           DFIVGFPGETD DF+ TM L+  + +  +FSF +SPR GTP ++    + E VK ERL  
Sbjct: 292 DFIVGFPGETDKDFQDTMKLIRDVDFDMSFSFIFSPRPGTPAADYPCDLSEEVKKERLYE 351

Query: 394 LQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNSKNHNIGDIIK 452
           LQ+++  Q + ++   +G    +L+E   K+   +L GR+   + V        IG  + 
Sbjct: 352 LQQQINSQAMRYSRLMLGTEQRILVEGPSKKDLMELRGRTENNRVVNFEGSPELIGQFVD 411

Query: 453 VRITDVKISTLYGELV 468
           V+I DV  ++L GELV
Sbjct: 412 VKIVDVFANSLRGELV 427


>gi|312622276|ref|YP_004023889.1| tRNA-i(6)a37 thiotransferase enzyme miab [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312202743|gb|ADQ46070.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 471

 Score =  455 bits (1170), Expect = e-126,   Method: Composition-based stats.
 Identities = 171/447 (38%), Positives = 274/447 (61%), Gaps = 14/447 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +++ + +YGCQMNV+DS ++  +  + GY    ++ +ADLI+ NTC +RE A  +VY  +
Sbjct: 36  KKYHIVTYGCQMNVHDSEKLAGILNAMGYIETENIQEADLIIFNTCSVREHAESRVYGNI 95

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAE--GEEILRRSPIVNVVVGPQTYYRLPELLER 142
           G ++ LK        DL++ V GC+ Q     +++ +  P ++++ G ++ ++ P+LL  
Sbjct: 96  GPLKRLKEK----KPDLIIGVCGCMPQQVEVAQKLAKLFPFLDIIFGTKSLHKFPQLLYT 151

Query: 143 ARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           A   K+ V+D     +   E +        R++GV+AF+ I  GC+ FC++C+VPY RG 
Sbjct: 152 AITEKKTVIDVSEDEDVVVEGIPTA-----RRQGVSAFVNIIYGCNNFCSYCIVPYVRGR 206

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR   +++ E  +L  NG+ E+TLLGQNVN+  GK L G   TF  LL  ++EIKG+ 
Sbjct: 207 ERSRQPEEIIYEIEQLAQNGIKEVTLLGQNVNS-YGKDL-GNNITFPKLLEKVNEIKGIE 264

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+ TSHP+D+SD LI A  DL+ +  ++HLPVQSGS RILK+MNR +T  +Y +++++
Sbjct: 265 RIRFVTSHPKDLSDELIVAMRDLEKVCEHIHLPVQSGSTRILKAMNRHYTKEDYLRLVEK 324

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +++  PDIAI++D IVGFPGETD+DF  T+D+  K+ +  A++F YS R GTP   M  Q
Sbjct: 325 LKTNIPDIAITTDIIVGFPGETDEDFEDTLDVCRKVEFDSAYTFIYSKRRGTPAEKMPNQ 384

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           V +N+K +R   L K + E  +  N   +G+  E+LI+   K    LVGR+   + V + 
Sbjct: 385 VPDNIKHQRFQRLVKLVEEIALKKNRQMLGRTYEILIDGRSKRNNLLVGRTRTNKVVNVK 444

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                +   + V+I +     LYGE++
Sbjct: 445 CSEEFMFKFVNVKILEAAEHWLYGEVI 471


>gi|218290137|ref|ZP_03494299.1| RNA modification enzyme, MiaB family [Alicyclobacillus
           acidocaldarius LAA1]
 gi|218239846|gb|EED07035.1| RNA modification enzyme, MiaB family [Alicyclobacillus
           acidocaldarius LAA1]
          Length = 497

 Score =  455 bits (1170), Expect = e-126,   Method: Composition-based stats.
 Identities = 165/447 (36%), Positives = 264/447 (59%), Gaps = 14/447 (3%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P RF +++YGCQMN +D+  M  +  + GYE  +  ++AD I+ NTC +RE A +KV+  
Sbjct: 54  PYRFLIRTYGCQMNEHDTEVMAGLLTAMGYEPTHDAEEADFILFNTCAVRENAEDKVFGE 113

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEE--ILRRSPIVNVVVGPQTYYRLPELLE 141
           +GR+R LK    ++  +L+  + GC+AQ +G +  +  + P +++V G    +RLP LL 
Sbjct: 114 IGRLRPLK----RQNPELIFGLCGCMAQEKGVQRMVREKYPWIDLVFGTHNIHRLPALLS 169

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
            AR  +  V   +    +    ++ D    RK  V A++ +Q GC+KFCT+C+VPYTRG+
Sbjct: 170 AARASQETVMEVWDNAPE----TVEDWPKLRKDRVRAWVNVQYGCNKFCTYCIVPYTRGV 225

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR    V+ E  +L+  G  +ITLLGQNVN +   G+D     F+ LL  ++ I G+ 
Sbjct: 226 ERSRLPEDVLREVVELVQEGYQDITLLGQNVNDY---GVDLGTTNFARLLRQVNSIPGIG 282

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
            +R+TTS+P + +D LI A  + + ++ ++HLPVQSG++ IL+ MNR HT   Y +++D+
Sbjct: 283 WIRFTTSNPWNFTDELIDAIAESENVVEHIHLPVQSGNNEILRRMNRSHTREYYLRLVDK 342

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           IR+  P ++I++D IVGFPGET+  F+ T+ LV ++ +  AF+F YSPR  TP +   + 
Sbjct: 343 IRTRIPGVSITTDLIVGFPGETEAHFQDTLRLVREVEFDNAFTFIYSPRENTPAARWNDD 402

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVL 440
                K ERL+ L +   E     N+   G ++EVL++   K     L GR+   + V+ 
Sbjct: 403 TPLEEKKERLMRLNEVQNEISRRHNEKLRGALVEVLVDGESKTNPDVLSGRTRTNKLVLF 462

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGEL 467
                 IG  I+VR+T+ +   L GE+
Sbjct: 463 RGDKSLIGQRIRVRVTEPQTFLLKGEI 489


>gi|325299379|ref|YP_004259296.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Bacteroides salanitronis DSM 18170]
 gi|324318932|gb|ADY36823.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Bacteroides salanitronis DSM 18170]
          Length = 463

 Score =  455 bits (1170), Expect = e-126,   Method: Composition-based stats.
 Identities = 166/443 (37%), Positives = 256/443 (57%), Gaps = 10/443 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F+++YGCQMNV DS  +  +    GYE   ++D+AD + +NTC IR+ A +K+ + L
Sbjct: 19  KKLFIETYGCQMNVADSEVVASVMQMAGYEPCGTLDEADAVFMNTCSIRDNAEQKILNRL 78

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
                L+  R      L+V V GC+A+   E+++     V++V GP  Y  LP+L+    
Sbjct: 79  EFFHALRKKRK----HLIVGVLGCMAERVKEDLIENH-HVDLVAGPDAYLSLPDLIASVE 133

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G++ ++ + S  + +  +       NR  G   +++I  GC+ FC +C+VPYTRG E S
Sbjct: 134 AGEKAINVELSTTETYRDVIPSRICGNRVSG---YVSIMRGCNNFCHYCIVPYTRGRERS 190

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R ++ +++E   L   G  E+TLLGQNVN++R +  DG   TF  LL +++E    +R+R
Sbjct: 191 RDVASILNEVNDLCQKGYKEVTLLGQNVNSYRFEQADGTVITFPMLLRTVAEAVPGMRVR 250

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +TTSHP+DMSD  ++   D+  +  ++HLPVQSGS RILK MNR++T   Y + +  IR 
Sbjct: 251 FTTSHPKDMSDETLQVIADVPNVCKHIHLPVQSGSSRILKLMNRKYTREWYLERVAAIRR 310

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN-MLEQVD 383
           + PD  +S+D   GF  ET++D + ++ L+ +  Y  AF FKYS R GT  S  + + V 
Sbjct: 311 IIPDCGLSTDIFSGFHSETEEDHQMSLSLMRECAYDSAFMFKYSERPGTYASKHLPDDVP 370

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRSPWLQSVVLNS 442
           E VK  RL  L +   +     N   VG+  EVL+E   K  K +L GR+   + VV + 
Sbjct: 371 EEVKIRRLNELIELQNQLSAESNAKDVGKTFEVLVEGVSKRSKEQLFGRTEQNKVVVFDR 430

Query: 443 KNHNIGDIIKVRITDVKISTLYG 465
             H IGD +KVRIT+   +TL G
Sbjct: 431 GTHRIGDFVKVRITESSSATLKG 453


>gi|110803553|ref|YP_698478.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Clostridium
           perfringens SM101]
 gi|123341843|sp|Q0STS9|MIAB_CLOPS RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|110684054|gb|ABG87424.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Clostridium perfringens
           SM101]
          Length = 447

 Score =  455 bits (1170), Expect = e-126,   Method: Composition-based stats.
 Identities = 175/457 (38%), Positives = 277/457 (60%), Gaps = 16/457 (3%)

Query: 17  IVDQCIVPQRFF-VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREK 75
           +  +  + ++ F + +YGCQMN  DS ++  M  SQGYER  + ++A +I+ NTC +RE 
Sbjct: 1   MTLENNMDKKLFCISTYGCQMNEEDSEKLSGMLKSQGYERTENKEEASIIIFNTCCVREN 60

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTY 133
           A  KV+  LG+++ LK    K+  +L++ + GC+ Q  G  +++L+  P V+++ G    
Sbjct: 61  AENKVFGNLGQLKQLK----KKNPNLVIAICGCMMQQVGMADKVLKTFPYVDIIFGTHNA 116

Query: 134 YRLPELLERA-RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTF 192
           ++ PE L R  + G +V +     E   E L I     +RK  V AF+TI  GC+ FCT+
Sbjct: 117 HKFPEYLHRVLQEGVQVKEILNKEEGIVEGLPI-----DRKSDVKAFVTIMYGCNNFCTY 171

Query: 193 CVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLY 252
           C+VPY RG E SR    ++ E  +L+  G  EITLLGQNVN+  GKGL+ E   F+ LL 
Sbjct: 172 CIVPYVRGRERSRKSEDIIKEIEELVSKGYKEITLLGQNVNS-YGKGLE-EDIDFAGLLR 229

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
            ++E+KGL R+R+ TSHP+D+SD +I A  + D L   +HLPVQSGS RILK MNR +  
Sbjct: 230 KVNEVKGLERVRFMTSHPKDLSDDVIMAIKECDKLCEQVHLPVQSGSSRILKEMNRHYDR 289

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
             Y  ++ +I+S  PD+ +++D I+GFPGET++DF  T+ L +++GY  AF+F YS R  
Sbjct: 290 EYYLDLVKKIKSEIPDVTLTTDIIIGFPGETEEDFLDTLSLCEEVGYDSAFTFIYSRRNH 349

Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGR 431
           TP   M  Q+ +++K +R   L + + ++ V  N    G+++EVL+E   K ++ KL GR
Sbjct: 350 TPADKMENQIPDDIKHDRFNRLVEAINKKVVIKNKEYEGKVVEVLVEGPSKNDETKLTGR 409

Query: 432 SPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           +   + V        +G+++ ++I   +  +L GE+V
Sbjct: 410 TRNGKLVNFAGDEKLVGELVNLKIVRAQPFSLIGEIV 446


>gi|297191648|ref|ZP_06909046.1| methylase [Streptomyces pristinaespiralis ATCC 25486]
 gi|297151014|gb|EDY65490.2| methylase [Streptomyces pristinaespiralis ATCC 25486]
          Length = 503

 Score =  455 bits (1170), Expect = e-126,   Method: Composition-based stats.
 Identities = 176/455 (38%), Positives = 257/455 (56%), Gaps = 20/455 (4%)

Query: 21  CIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNS--MDDADLIVLNTCHIREKAAE 78
            +  + + V++YGCQMNV+DS R+  +    GY R       DAD++V NTC +RE A  
Sbjct: 9   AMSAKTYEVRTYGCQMNVHDSERLSGLLEDAGYVRAPEGADGDADVVVFNTCAVRENADN 68

Query: 79  KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPE 138
           K+Y  LGR+  +K+ R      + + V GC+AQ + + I+ ++P V+VV G     +LP 
Sbjct: 69  KLYGNLGRLAPMKSRR----PGMQIAVGGCLAQKDRDTIVTKAPWVDVVFGTHNIGKLPV 124

Query: 139 LLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197
           LLERAR  +   V+   S+E     L        R+    A+++I  GC+  CTFC+VP 
Sbjct: 125 LLERARVQEEAQVEIAESLEAFPSTLPT-----RRESAYAAWVSISVGCNNTCTFCIVPA 179

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257
            RG E  R    ++ E   L+  GV EITLLGQNVNA  G  + G++  FS LL +   I
Sbjct: 180 LRGKEKDRRPGDILAEIEALVAEGVSEITLLGQNVNA-YGSDI-GDREAFSKLLRACGNI 237

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
           +GL R+R+T+ HPRD +D +I A  +   +MP LH+P+QSGSD ILK+M R +    +  
Sbjct: 238 EGLERVRFTSPHPRDFTDDVIAAMAETPNVMPQLHMPLQSGSDTILKAMRRSYRQERFLG 297

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
           II+++R+  P  AIS+D IVGFPGET++DF  TM  V +  +A AF+F+YS R GTP + 
Sbjct: 298 IIEKVRAAIPHAAISTDIIVGFPGETEEDFEQTMHTVREARFANAFTFQYSKRPGTPAAT 357

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKG---KLVGRSP 433
           M  Q+ + V  ER + L     E     N   VG+ +EV++ E  G++ G   +L GR+P
Sbjct: 358 MDGQIPKEVVQERYMRLVALQEEISWEENKKQVGRTLEVMVAEGEGRKDGATHRLSGRAP 417

Query: 434 WLQSVVLNSKNH--NIGDIIKVRITDVKISTLYGE 466
             + V     +     GD++ V IT      L  E
Sbjct: 418 DNRLVHFTKPDAEVRPGDVVTVEITYAAPHHLLAE 452


>gi|298483271|ref|ZP_07001450.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacteroides sp. D22]
 gi|298270588|gb|EFI12170.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacteroides sp. D22]
          Length = 457

 Score =  455 bits (1170), Expect = e-125,   Method: Composition-based stats.
 Identities = 160/446 (35%), Positives = 255/446 (57%), Gaps = 10/446 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F+++YGCQMNV DS  +  +    GY    ++++AD + +NTC IR+ A +K+ + L
Sbjct: 20  KKLFIETYGCQMNVADSEVIASVMQMAGYSVAETLEEADAVFMNTCSIRDNAEQKILNRL 79

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
               +LK  + +    L+V V GC+A+   ++++     V++VVGP  Y  LP+L+    
Sbjct: 80  EFFHSLKKKKKR----LIVGVLGCMAERVKDDLITNH-HVDLVVGPDAYLTLPDLIAAVE 134

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G++ ++ + S  + +  +       N   G   F++I  GC+ FCT+C+VPYTRG E S
Sbjct: 135 TGEKAINVELSTTETYRDVIPSRICGNHISG---FVSIMRGCNNFCTYCIVPYTRGRERS 191

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R +  +++E   L+  G  E+TLLGQNVN++R +   GE  TF  LL +++E    VR+R
Sbjct: 192 RDVESILNEVADLVAKGYKEVTLLGQNVNSYRFERPTGEVVTFPMLLRTVAEAAPGVRIR 251

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +TTSHP+DMSD  ++    +  +  ++HLPVQSGS RILK MNR++T   Y   +  I+ 
Sbjct: 252 FTTSHPKDMSDETLEVIAQVPNVCKHIHLPVQSGSSRILKLMNRKYTREWYLDRVAAIKR 311

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN-MLEQVD 383
           + PD  +++D   GF  ET++D   ++ L++  GY  AF FKYS R GT  S  + + V 
Sbjct: 312 IIPDCGLTTDIFSGFHSETEEDHAMSLSLMEACGYDAAFMFKYSERPGTYASKHLEDNVP 371

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNS 442
           E VK  RL  +           N  C+G+  EVL+E   K    +L GR+   + VV + 
Sbjct: 372 EEVKVHRLNEIIALQNRLSAESNQRCIGKTYEVLVEGVSKRSRDQLFGRTEQNRVVVFDR 431

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
             H +GD + VR+T+   +TL GE +
Sbjct: 432 GTHRVGDFVNVRVTEASSATLKGEEI 457


>gi|260549787|ref|ZP_05824003.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Acinetobacter sp.
           RUH2624]
 gi|260407037|gb|EEX00514.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Acinetobacter sp.
           RUH2624]
          Length = 483

 Score =  455 bits (1170), Expect = e-125,   Method: Composition-based stats.
 Identities = 195/455 (42%), Positives = 290/455 (63%), Gaps = 20/455 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ ++++ GCQMN YDS RM D+   S GY    + ++AD++++NTC IREKA EKV+S 
Sbjct: 31  KKLYIETQGCQMNEYDSHRMADLLGDSHGYVLTTNPNEADILLMNTCSIREKAQEKVFSE 90

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR R LK        DL++ V GCVA  EG+ I +R+P V+++ GPQT +RLP++L++ 
Sbjct: 91  LGRWRKLKEQ----NPDLVIGVGGCVASQEGDNIQKRAPYVDMIFGPQTLHRLPQMLDQH 146

Query: 144 --------RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
                   +   ++VD  +   +KF+ L        R  G  AF++I EGC K+C+FCVV
Sbjct: 147 HAQVEKPKKEKIKLVDISFPDIEKFDFLP-----EPRVEGFKAFVSIMEGCSKYCSFCVV 201

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
           PYTRG E+SR L  V+ E   L + GV EI+LLGQNVN +RG+  +G  CTF +LL  ++
Sbjct: 202 PYTRGEEVSRPLDDVLAEIAGLAEKGVREISLLGQNVNGYRGETFEGGICTFPELLRLVA 261

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
           EI G+ RLRYTTSHP + SD LI+ + DL  ++ +LHLPVQSGS+ +LK+M R HT   Y
Sbjct: 262 EIPGIGRLRYTTSHPLEFSDELIQCYEDLPQMVSHLHLPVQSGSNDVLKAMKRNHTIDVY 321

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
              I ++R +RPD+ +SSDFI+GFPGETD++F  T+  +  + +  ++SF YS R GTP 
Sbjct: 322 IDKIAKLRKIRPDMHLSSDFIIGFPGETDENFAETLQFIKDLDFDHSYSFVYSKRPGTPA 381

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPW 434
           S++ +   E+VK ERL  +Q+ +++  +   DA +G+I  VLIEK    +   LVG +  
Sbjct: 382 SDLPDTTPEHVKKERLAQVQQVIKQSSIEKTDAMLGKIERVLIEKVSDQDPNILVGTADN 441

Query: 435 LQSVVLNSKNHNIGDIIKVRITDVKI-STLYGELV 468
            + V        +G   ++ IT++K  + +YGEL+
Sbjct: 442 TRLVTFVGDASWVGRFAEIEITEIKTLNLVYGELL 476


>gi|299768718|ref|YP_003730744.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Acinetobacter
           sp. DR1]
 gi|298698806|gb|ADI89371.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Acinetobacter
           sp. DR1]
          Length = 483

 Score =  455 bits (1170), Expect = e-125,   Method: Composition-based stats.
 Identities = 196/471 (41%), Positives = 294/471 (62%), Gaps = 22/471 (4%)

Query: 9   GVAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVL 67
                 +   D  I  ++ ++++ GCQMN YDS RM D+   S GY   ++ ++AD++++
Sbjct: 17  NTVTQPTHTTDVSI--KKLYIETQGCQMNEYDSHRMADLLGDSHGYILTSNPNEADILLM 74

Query: 68  NTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVV 127
           NTC IREKA EKV+S LGR R LK+       DL++ V GCVA  EG+ I +R+P V+++
Sbjct: 75  NTCSIREKAQEKVFSELGRWRKLKDK----NPDLVIGVGGCVASQEGDNIQKRAPYVDMI 130

Query: 128 VGPQTYYRLPELLERA--------RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAF 179
            GPQT +RLP++L++         +   ++VD  +   +KF+ L        R  G  AF
Sbjct: 131 FGPQTLHRLPQMLDQHNAQVEKPKKDKIKLVDISFPDIEKFDFLP-----EPRVEGFKAF 185

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
           ++I EGC K+C+FCVVPYTRG E+SR L  V+ E   L + GV EI+LLGQNVN +RG+ 
Sbjct: 186 VSIMEGCSKYCSFCVVPYTRGEEVSRPLDDVLAEIAGLAEKGVREISLLGQNVNGYRGET 245

Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
            +G  CTF +LL  ++EI G+ RLRYTTSHP + SD LI+ + DL  ++ +LHLPVQSGS
Sbjct: 246 FEGGICTFPELLRLVAEIPGIGRLRYTTSHPLEFSDELIQCYEDLPQMVSHLHLPVQSGS 305

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
           + +L++M R HT   Y   I ++R +RPD+ +SSDFI+GFPGETD++F  T+  +  + +
Sbjct: 306 NDVLQAMKRNHTIDVYIDKIAKLRKIRPDMHLSSDFIIGFPGETDENFAETLQFIKDLDF 365

Query: 360 AQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419
             ++SF YS R GTP S++ +   E VK ERL  +QK +++  +   DA +G+I  VLIE
Sbjct: 366 DHSYSFVYSKRPGTPASDLPDTTPEQVKKERLAQVQKVIKQSSIEKTDAMLGKIERVLIE 425

Query: 420 KHGK-EKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKI-STLYGELV 468
           K    +   L+G +   + V        +G   ++ IT++K  + +YGEL+
Sbjct: 426 KVSDQDPNILIGTADNTRLVTFVGDATWVGRFAEIEITEIKTLNFVYGELL 476


>gi|296113655|ref|YP_003627593.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Moraxella catarrhalis
           RH4]
 gi|295921350|gb|ADG61701.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Moraxella catarrhalis
           RH4]
 gi|326559649|gb|EGE10063.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Moraxella
           catarrhalis 7169]
 gi|326560011|gb|EGE10406.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Moraxella
           catarrhalis 46P47B1]
 gi|326566929|gb|EGE17067.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Moraxella
           catarrhalis 12P80B1]
 gi|326572683|gb|EGE22672.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Moraxella
           catarrhalis CO72]
 gi|326575068|gb|EGE24997.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Moraxella
           catarrhalis O35E]
          Length = 489

 Score =  454 bits (1169), Expect = e-125,   Method: Composition-based stats.
 Identities = 196/472 (41%), Positives = 285/472 (60%), Gaps = 24/472 (5%)

Query: 12  HMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTC 70
           H + +      VP++ ++ + GCQMN YDS +M D+   S G    N ++DAD++++NTC
Sbjct: 23  HEIREADRDTAVPKKVYIVTQGCQMNEYDSQKMGDVLGSSHGMVITNDINDADVLIMNTC 82

Query: 71  HIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGP 130
            IREKA EKV+S LGR R LK        +L++ V GCVA  EG+ I +R+P V++V GP
Sbjct: 83  SIREKAQEKVFSELGRWRKLKEK----NPNLVIGVGGCVASQEGDNIQKRAPYVDMVFGP 138

Query: 131 QTYYRLPELLERARFGKR------------VVDTDYSVEDKFERLSIVDGGYNRKRGVTA 178
           QT +RLPEL E      +            VVD  +   +KF+ L        R  G TA
Sbjct: 139 QTLHRLPELYESTTNQAKTDMGQIPKNRIGVVDVSFPSIEKFDFLP-----EPRVEGYTA 193

Query: 179 FLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK 238
           F++I EGC K+C+FCVVPYTRG E+SR L  V+ E   L + GV E+ LLGQNVN +RG+
Sbjct: 194 FVSIMEGCSKYCSFCVVPYTRGEELSRPLDDVLAEIDSLAEQGVREVNLLGQNVNGYRGE 253

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
             DG  C FS+LL+ +S I G+ R+RYTTSHP + +D +I+A+  +D L+ +LHLP+QSG
Sbjct: 254 KDDGSICRFSELLHYVSYIDGIERIRYTTSHPLEFTDDIIEAYQSIDKLVSHLHLPIQSG 313

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           S+++L +M R HT   Y   I ++R +RPD+ +SSDFI+GFPGETD+DF  T+     + 
Sbjct: 314 SNQVLAAMKRNHTVDVYMNQIAKLRKIRPDLHLSSDFIIGFPGETDEDFLQTLQFAKDLD 373

Query: 359 YAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI 418
           +  ++SF YS R GTP S++ + V    K +RL   Q+ ++       +A VGQ + VL 
Sbjct: 374 FDHSYSFIYSKRPGTPASDLPDDVSLETKKQRLAVFQELIKRSTFEKTEAMVGQTLRVLA 433

Query: 419 EKH-GKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLY-GELV 468
           E+   + +G L G +   +SV+  +    +G  + ++IT      L  GELV
Sbjct: 434 EEPANRRQGYLHGTADNTRSVIFKADTDLLGKFVMIKITKAISMHLVEGELV 485


>gi|188589964|ref|YP_001921085.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Clostridium botulinum E3
           str. Alaska E43]
 gi|229890484|sp|B2V276|MIAB_CLOBA RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|188500245|gb|ACD53381.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Clostridium botulinum E3
           str. Alaska E43]
          Length = 456

 Score =  454 bits (1169), Expect = e-125,   Method: Composition-based stats.
 Identities = 185/445 (41%), Positives = 269/445 (60%), Gaps = 13/445 (2%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           FF++++GCQMN  DS ++  M  SQGYE   + D+A +++ NTC +RE A  KV+  LGR
Sbjct: 20  FFIQTFGCQMNEEDSEKLSGMLKSQGYEETENRDEASIVIFNTCCVRENAENKVFGNLGR 79

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           ++N K        +L++ + GC+ Q +G  +EIL R P V+++ G    Y+ PE L R +
Sbjct: 80  LKNQKEK----NPNLIIALCGCMMQQKGMADEILSRFPYVDIIFGTHNAYKFPEYLHRVQ 135

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
                V   +  E +      +D    RK  V AF+TI  GC+ FCT+CVVPY RG E S
Sbjct: 136 VEGVQVKEIFDKETEIVEGVPID----RKSNVKAFVTIMYGCNNFCTYCVVPYVRGRERS 191

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R    + +E ++L+ NG  EITLLGQNVN+  GKGL+ E+ TF+ LL  ++EI GL RLR
Sbjct: 192 RRPEDIENEIKELVSNGYKEITLLGQNVNS-YGKGLE-EEITFAQLLRRINEIDGLERLR 249

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           + TSHP+D++  ++ A  D D L   +HLPVQSGS+ IL+ MNR +   +Y ++  +IR 
Sbjct: 250 FMTSHPKDLTLDVVYAIRDCDKLCEQIHLPVQSGSNEILQKMNRHYNKEQYLELAKKIRE 309

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             PD+  S+D IVGFPGET++DF  T++LV ++ Y  AF+F YS R  TP   M +Q+ +
Sbjct: 310 EIPDVTFSTDIIVGFPGETEEDFEETINLVKEVRYDAAFTFIYSRRNHTPADKMEDQIPD 369

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNSK 443
           +VK +R   L   + E  V  N A  G+I EVL+E   K    KL GR+   + V  +  
Sbjct: 370 DVKHDRFNRLVAAVNEGIVVGNKAAEGKIYEVLVEGTSKNNENKLTGRTRNAKLVNFDGC 429

Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468
              IG ++KV+I + K  +L GE+V
Sbjct: 430 KEMIGKLVKVKIIEAKSFSLVGEVV 454


>gi|303241534|ref|ZP_07328035.1| RNA modification enzyme, MiaB family [Acetivibrio cellulolyticus
           CD2]
 gi|302590952|gb|EFL60699.1| RNA modification enzyme, MiaB family [Acetivibrio cellulolyticus
           CD2]
          Length = 477

 Score =  454 bits (1169), Expect = e-125,   Method: Composition-based stats.
 Identities = 180/453 (39%), Positives = 271/453 (59%), Gaps = 15/453 (3%)

Query: 20  QCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEK 79
           Q    +RF++ ++GCQMN +DS ++  M    GY     MD++DLI+ NTC +RE A  K
Sbjct: 36  QTERKKRFYLATFGCQMNEHDSEKLAGMLGEMGYSECEDMDESDLIIFNTCCVRENAELK 95

Query: 80  VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLP 137
           VY  LG +++LK        D+++ + GC+ Q     E I +    V+++ G    Y+ P
Sbjct: 96  VYGHLGAMKHLKEK----NPDMIIAMCGCMMQQPEVVEHIKKVYRQVDLIFGTHNLYKFP 151

Query: 138 ELLERA-RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
           ELL  A    K V+D   S+    E + I      RK  V A++T+  GC+ FC++C+VP
Sbjct: 152 ELLFSAINSNKTVIDIMDSIGLIAEEMPI-----ERKDEVKAWVTVMYGCNNFCSYCIVP 206

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256
           Y RG E SR +  +VDE R L   G+ EITLLGQNVN+  GK L G   TF+ LL  L+E
Sbjct: 207 YVRGRERSRYIENIVDEVRMLGRQGLKEITLLGQNVNS-YGKDL-GNDTTFAKLLGELNE 264

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           ++G+ R+R+ TSHP+D+SD LI A  DL+ +  +LHLP QSGS RILK MNR+++  +Y 
Sbjct: 265 VEGIERIRFMTSHPKDLSDELIFAMRDLNKVCEHLHLPFQSGSTRILKEMNRKYSKEDYL 324

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
            ++++++   P I+++SD IVGFPGET++DF+ T+D+V+K  + Q +SF YS R GTP +
Sbjct: 325 NLLEKVKINIPGISLTSDIIVGFPGETEEDFQDTLDVVEKGRFDQIYSFLYSKRTGTPAA 384

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWL 435
             ++QV E VK ER   L +         N   + + IEVL+E   K   K   GR+   
Sbjct: 385 KSVDQVPEEVKKERFQRLMEVQNRISNEINHEYLDKEIEVLVEGESKTNDKIYTGRTREN 444

Query: 436 QSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           + V  +  +  IG +++V+I  VK  +L G+++
Sbjct: 445 KIVNFDGNSEMIGKLVRVKIDTVKTWSLEGKVL 477


>gi|326562493|gb|EGE12810.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Moraxella
           catarrhalis 103P14B1]
 gi|326568692|gb|EGE18763.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Moraxella
           catarrhalis BC7]
 gi|326568869|gb|EGE18939.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Moraxella
           catarrhalis BC8]
          Length = 489

 Score =  454 bits (1169), Expect = e-125,   Method: Composition-based stats.
 Identities = 196/472 (41%), Positives = 284/472 (60%), Gaps = 24/472 (5%)

Query: 12  HMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTC 70
           H + +      VP++ ++ + GCQMN YDS +M D+   S G    N ++DAD++++NTC
Sbjct: 23  HEIREADRDTAVPKKVYIVTQGCQMNEYDSQKMGDVLGSSHGMVITNDINDADVLIMNTC 82

Query: 71  HIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGP 130
            IREKA EKV+S LGR R LK        +L++ V GCVA  EG+ I +R+P V++V GP
Sbjct: 83  SIREKAQEKVFSELGRWRKLKEK----NPNLVIGVGGCVASQEGDNIQKRAPYVDMVFGP 138

Query: 131 QTYYRLPELLERARFGKR------------VVDTDYSVEDKFERLSIVDGGYNRKRGVTA 178
           QT +RLPEL E      +            VVD  +   +KF+ L        R  G TA
Sbjct: 139 QTLHRLPELYESTTNQAKTDMGQIPKNRIGVVDVSFPSIEKFDFLP-----EPRVEGYTA 193

Query: 179 FLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK 238
           F++I EGC K+C+FCVVPYTRG E+SR L  V+ E   L + GV E+ LLGQNVN +RG+
Sbjct: 194 FVSIMEGCSKYCSFCVVPYTRGEELSRPLDDVLAEIDSLAEQGVREVNLLGQNVNGYRGE 253

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
             DG  C FS+LL+ +S I G+ R+RYTTSHP + +D +I+A+  +D L+ +LHLP+QSG
Sbjct: 254 KDDGSICRFSELLHYVSYIDGIERIRYTTSHPLEFTDDIIEAYQSIDKLVSHLHLPIQSG 313

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           S+++L +M R HT   Y   I ++R +RPD+ +SSDFI+GFPGETD+DF  T+     + 
Sbjct: 314 SNQVLAAMKRNHTVDVYMNQIAKLRKIRPDLHLSSDFIIGFPGETDEDFLQTLQFAKDLD 373

Query: 359 YAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI 418
           +  ++SF YS R GTP S++ + V    K +RL   Q+ ++        A VGQ + VL 
Sbjct: 374 FDHSYSFIYSKRPGTPASDLPDDVSLETKKQRLAVFQELIKRSTFDKTQAMVGQTLRVLA 433

Query: 419 EKH-GKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLY-GELV 468
           E+   + +G L G +   +SV+  +    +G  + ++IT      L  GELV
Sbjct: 434 EEPANRRQGYLHGTADNTRSVIFKADTDLLGKFVMIKITKAISMHLVEGELV 485


>gi|56460049|ref|YP_155330.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Idiomarina
           loihiensis L2TR]
 gi|81363034|sp|Q5QYC5|MIAB_IDILO RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|56179059|gb|AAV81781.1| 2-methylthioadenine synthetase [Idiomarina loihiensis L2TR]
          Length = 479

 Score =  454 bits (1169), Expect = e-125,   Method: Composition-based stats.
 Identities = 202/449 (44%), Positives = 294/449 (65%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++ ++K++GCQMN YDS +M ++  S  GY+     +DADLI+LNTC IREKA EKV+
Sbjct: 1   MSKKLYIKTWGCQMNEYDSTKMAELLHSTHGYDVAEEAEDADLILLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR +NLK    K   +LL+ V GCVA  EG EI  R+P V+++ GPQT +RLPE++ 
Sbjct: 61  HQLGRWKNLK----KNNPNLLIGVGGCVASQEGNEIRARAPFVDIIFGPQTLHRLPEMVN 116

Query: 142 RA-RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           +       +VD  +   +KF+RL+       +  G +AF++I EGC K+C+FCVVPYTRG
Sbjct: 117 QVSETHAPMVDVSFPEIEKFDRLA-----EPKADGASAFVSIMEGCSKYCSFCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR +  V+ E  +L + GV E+ LLGQNVNA+RG+  DGE C F++LL+ ++ I G+
Sbjct: 172 EEVSRPVDDVIYEIAQLAEQGVREVNLLGQNVNAYRGEHYDGEVCRFAELLHLVAAIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+RYTTSHP + +D + +A+  +  L+ +LHLPVQSGSDRIL  M R HTA EY+  I 
Sbjct: 232 DRIRYTTSHPVEFTDDITEAYKTIPELVSHLHLPVQSGSDRILTMMKRGHTALEYKSKIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
            ++  RPDIA+SSDFI+GFPGE+D DF ATMDL+  I +  +FSF YS R GTP +++ +
Sbjct: 292 ALKKARPDIAMSSDFIIGFPGESDADFEATMDLIQSIDFDMSFSFIYSARPGTPAADLPD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439
            + E  K +RL  LQ++L +Q ++     +     +L+    K+   +L GR+   + V 
Sbjct: 352 DISEETKKKRLQLLQQRLNQQSMAHARRMLETEQRILVTGPSKKNPMELTGRTENNRVVN 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
              + H IG  + VRIT+V  ++L GEL+
Sbjct: 412 FVGQPHMIGQFVDVRITEVLPNSLRGELI 440


>gi|189464718|ref|ZP_03013503.1| hypothetical protein BACINT_01062 [Bacteroides intestinalis DSM
           17393]
 gi|189436992|gb|EDV05977.1| hypothetical protein BACINT_01062 [Bacteroides intestinalis DSM
           17393]
          Length = 470

 Score =  454 bits (1169), Expect = e-125,   Method: Composition-based stats.
 Identities = 167/446 (37%), Positives = 260/446 (58%), Gaps = 10/446 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F+++YGCQMNV DS  +  +    GY   +++++AD + +NTC IR+ A +K+ + L
Sbjct: 33  KKLFIETYGCQMNVADSEVIASVMQMAGYSTADTLEEADAVFMNTCSIRDNAEQKILNRL 92

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
               +LK    K+  +L+V V GC+A+   ++++     V++VVGP  Y  LP+L+    
Sbjct: 93  EFFHSLK----KKKRNLIVGVLGCMAERVKDDLITNH-HVDLVVGPDAYLTLPDLVAAVE 147

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G++ ++ + S  + +  +       N   G   F++I  GC+ FCT+C+VPYTRG E S
Sbjct: 148 AGEKAINVELSTTETYRDVIPSRICGNHISG---FVSIMRGCNNFCTYCIVPYTRGRERS 204

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R +  +++E   L+  G  E+TLLGQNVN++R +  DGE  TF  LL +++E    VR+R
Sbjct: 205 RDVESILNEVSDLVVKGYKEVTLLGQNVNSYRFEKPDGEVVTFPMLLRTVAEAAPGVRVR 264

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +TTSHP+DMSD  ++    +  +  ++HLPVQSGS RILK MNR++T   Y   +D IR 
Sbjct: 265 FTTSHPKDMSDETLEVIAQVPNVCKHIHLPVQSGSSRILKLMNRKYTREWYLGRVDAIRR 324

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN-MLEQVD 383
           + PD  +S+D   GF  ET++D   ++ L++  GY  AF FKYS R GT  S  + + V 
Sbjct: 325 IIPDCGLSTDIFSGFHSETEEDHLLSLSLMEICGYDSAFMFKYSERPGTYASKHLPDDVS 384

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNS 442
           E VK  RL  +           N  C+G+  EVL+E   K    +LVGR+   + VV + 
Sbjct: 385 EEVKIRRLNEIIALQNRLSAESNARCIGKTYEVLVEGVSKRSREQLVGRTEQNRVVVFDR 444

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
             H +GD + V+IT+   +TL GE V
Sbjct: 445 GTHRVGDFVMVKITEASSATLKGEEV 470


>gi|262377253|ref|ZP_06070477.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Acinetobacter lwoffii
           SH145]
 gi|262307706|gb|EEY88845.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Acinetobacter lwoffii
           SH145]
          Length = 485

 Score =  454 bits (1169), Expect = e-125,   Method: Composition-based stats.
 Identities = 193/470 (41%), Positives = 291/470 (61%), Gaps = 22/470 (4%)

Query: 10  VAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLN 68
                +   D  +  ++ ++++ GCQMN YDS RM D+   S GY       +AD++++N
Sbjct: 20  TQPAHTPAHDASV--KKLYIETQGCQMNEYDSHRMADLLGDSHGYVLTTDPKEADILLMN 77

Query: 69  TCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVV 128
           TC IREKA EKV+S LGR R LK+       DL++ V GCVA  EG+ I +R+  V+++ 
Sbjct: 78  TCSIREKAQEKVFSELGRWRKLKDK----NPDLIIGVGGCVASQEGDNIQKRANYVDMIF 133

Query: 129 GPQTYYRLPELLERARF--------GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFL 180
           GPQT +RLP++L++             ++VD  +   +KF+ L        R  G  AF+
Sbjct: 134 GPQTLHRLPQMLDQHFEQIEKPKKEKIKLVDISFPDIEKFDFLP-----EPRVEGYKAFV 188

Query: 181 TIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL 240
           +I EGC K+C+FCVVPYTRG E+SR L  V+ E   L + GV EI+LLGQNVN +RG+  
Sbjct: 189 SIMEGCSKYCSFCVVPYTRGEEVSRPLDDVLAEIAGLAEKGVREISLLGQNVNGYRGETF 248

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300
           +G  CTF+DLL  +++I G+ R+RYTTSHP + +D LI+ + DL  ++ +LHLPVQSGS+
Sbjct: 249 EGNICTFADLLRLVADIPGIGRIRYTTSHPLEFNDDLIQCYRDLPQMVSHLHLPVQSGSN 308

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
            +L++M R HT   Y + I ++R+VRPD+ +SSDFI+GFPGETD++F  T   +  + + 
Sbjct: 309 DVLQAMKRNHTIDVYIEKIKKLRAVRPDMHLSSDFIIGFPGETDENFEETYQFIQDLDFD 368

Query: 361 QAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
            ++SF YS R GTP + + + + E+VK ERL  +Q+ ++   +   DA +G I  VLIEK
Sbjct: 369 HSYSFIYSKRPGTPAAELEDTISEDVKKERLAKVQQWIKRSSIDKTDAMLGTIQRVLIEK 428

Query: 421 HG-KEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKI-STLYGELV 468
              K+   LVG +   + V        +G   ++ IT++K  + +YGEL+
Sbjct: 429 VSDKDPNILVGTADNTRYVNFIGDPAWVGRFAEIEITEIKTLNLVYGELL 478


>gi|237746577|ref|ZP_04577057.1| tRNA modifying enzyme [Oxalobacter formigenes HOxBLS]
 gi|229377928|gb|EEO28019.1| tRNA modifying enzyme [Oxalobacter formigenes HOxBLS]
          Length = 448

 Score =  454 bits (1169), Expect = e-125,   Method: Composition-based stats.
 Identities = 194/450 (43%), Positives = 288/450 (64%), Gaps = 15/450 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQ-GYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++ F+K++GCQMN YDS +M D+  ++  Y R ++ ++ADLI+LNTC +REKA EKV+
Sbjct: 1   MQKKVFIKTFGCQMNEYDSGKMADLLEAEANYLRTDNPEEADLILLNTCSVREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S LGR R L+    K    L++ V+GCVA  EGE +++R+P VN+V GPQT +RLP+++ 
Sbjct: 61  SDLGRFRKLR----KNRAGLIIGVSGCVASQEGEALIKRAPYVNLVFGPQTLHRLPDMIR 116

Query: 142 RARF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
                G+  +DT +   +KF+ L        R     A +T+ EGC K+C++C+VPYTRG
Sbjct: 117 AFEKTGEPQIDTSFPEIEKFDYLPPA-----RVDAPVACVTVMEGCSKYCSYCIVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR    V+ E  +L   GV EITLLGQNVNA+RG+   GE   F+ L+ +++EI G+
Sbjct: 172 AEVSRRFGDVLVEVAELAGQGVKEITLLGQNVNAYRGEIEGGETADFAMLIETIAEIPGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+ TSHPR+ +  LI  +  +  L+ +L+LP Q GSDRIL +M R +TA EY+ II 
Sbjct: 232 ERIRFVTSHPREFTQRLIDVYARVPQLVSHLYLPAQHGSDRILAAMKRGYTALEYKSIIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           R++++RPD+ +SSDFIVGFPGETD DF A M L+D+IG+  +FSF YSPR GTP + +  
Sbjct: 292 RLKAIRPDLLVSSDFIVGFPGETDADFDAMMKLIDEIGFDNSFSFLYSPRPGTPAAALPM 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVV 439
            +  +V+ ERL  LQ+K+      +N   VG + +VLIE    +  + + G++   + V 
Sbjct: 352 DIPLSVRKERLQRLQEKIDSHTRHYNRLMVGSVQQVLIEAISHKNDRQVQGKTGNNRVVH 411

Query: 440 LN---SKNHNIGDIIKVRITDVKISTLYGE 466
           +         IG +  VRIT+    +L GE
Sbjct: 412 IPVEGDPKALIGQMRDVRITEAANFSLRGE 441


>gi|293610875|ref|ZP_06693175.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292827219|gb|EFF85584.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 483

 Score =  454 bits (1169), Expect = e-125,   Method: Composition-based stats.
 Identities = 196/471 (41%), Positives = 294/471 (62%), Gaps = 22/471 (4%)

Query: 9   GVAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVL 67
                 +   D  I  ++ ++++ GCQMN YDS RM D+   S GY    + ++AD++++
Sbjct: 17  NTVTQPTHTTDVSI--KKLYIETQGCQMNEYDSHRMADLLGDSHGYVLTTNPNEADILLM 74

Query: 68  NTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVV 127
           NTC IREKA EKV+S LGR R LK+       DL++ V GCVA  EG+ I +R+P V+++
Sbjct: 75  NTCSIREKAQEKVFSELGRWRKLKDK----NPDLVIGVGGCVASQEGDNIQKRAPYVDMI 130

Query: 128 VGPQTYYRLPELLERA--------RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAF 179
            GPQT +RLP++L++         +   ++VD  +   +KF+ L        R  G  AF
Sbjct: 131 FGPQTLHRLPQMLDQHNAQVEKPKKDKIKLVDISFPDIEKFDFLP-----EPRVEGFKAF 185

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
           ++I EGC K+C+FCVVPYTRG E+SR L  V+ E   L + GV EI+LLGQNVN +RG+ 
Sbjct: 186 VSIMEGCSKYCSFCVVPYTRGEEVSRPLDDVLAEIAGLAEKGVREISLLGQNVNGYRGET 245

Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
            +G  CTF +LL  ++EI G+ RLRYTTSHP + SD LI+ + DL  ++ +LHLPVQSGS
Sbjct: 246 FEGGICTFPELLRLVAEIPGIGRLRYTTSHPLEFSDELIQCYEDLPQMVSHLHLPVQSGS 305

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
           + +L++M R HT   Y   I ++R +RPD+ +SSDFI+GFPGETD++F  T+  +  + +
Sbjct: 306 NDVLQAMKRNHTIDVYIDKIAKLRKIRPDMHLSSDFIIGFPGETDENFAETLQFIKDLDF 365

Query: 360 AQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419
             ++SF YS R GTP S++ +   E+VK ERL  +QK +++  +   DA +G+I  VLIE
Sbjct: 366 DHSYSFVYSKRPGTPASDLPDTTPEHVKKERLAQVQKVIKQSSIEKTDAMLGKIERVLIE 425

Query: 420 KHGK-EKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKI-STLYGELV 468
           K    +   L+G +   + V        +G   ++ IT++K  + +YGEL+
Sbjct: 426 KVSDQDPNILLGTADNTRLVTFVGDASWVGRFAEIEITEIKTLNLVYGELL 476


>gi|23099083|ref|NP_692549.1| hypothetical protein OB1628 [Oceanobacillus iheyensis HTE831]
 gi|81746368|sp|Q8EQR4|MIAB_OCEIH RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|22777311|dbj|BAC13584.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
          Length = 519

 Score =  454 bits (1168), Expect = e-125,   Method: Composition-based stats.
 Identities = 172/459 (37%), Positives = 270/459 (58%), Gaps = 15/459 (3%)

Query: 14  VSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIR 73
           + + +++    ++F +++YGCQMN +D+  M  +    GYE     ++AD+I+LNTC IR
Sbjct: 65  IPEDMEKIGHGKKFLIRTYGCQMNEHDTEVMAGILSEMGYESTTVTEEADIILLNTCAIR 124

Query: 74  EKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQ 131
           E A  KV+  +G ++ LK        DL++ V GC++Q E   + IL++   ++++ G  
Sbjct: 125 ENAENKVFGEIGHLKPLKLE----NPDLIIGVCGCMSQEESVVDRILQKHQHIDLIFGTH 180

Query: 132 TYYRLPELLERARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190
             +RLP L++ A FGK ++   +S E D  E L        RK  + A++ I  GCDKFC
Sbjct: 181 NIHRLPHLVKEALFGKEMIVEVWSKEGDIIENLP-----KARKGKIKAWVNIMYGCDKFC 235

Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDL 250
           T+C+VP TRG E SR    ++ E R L+  G  E+TLLGQNVNA  GK  +  +    DL
Sbjct: 236 TYCIVPMTRGKERSRRPKDIIQEVRHLVAQGYQEVTLLGQNVNA-YGKDFEDIEYGLGDL 294

Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
           +  + +I  + R+R+TTSHPRD  D LI+       L+ ++HLPVQSGS  ILK MNR++
Sbjct: 295 MNDIHKID-IPRVRFTTSHPRDFDDRLIEVLAQGGNLLDHIHLPVQSGSSEILKKMNRKY 353

Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370
           T  EY +++ +IR   P+  +++D IVGFP ET++ F  TM LV+++G+  A++F YSPR
Sbjct: 354 TREEYLELVRKIRIAMPNATLTTDIIVGFPNETEEQFEETMTLVEEVGFEAAYTFIYSPR 413

Query: 371 LGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LV 429
            GTP +   + V E VK +RL  L + + +Q  +      G+ ++VL+E   K+  + L 
Sbjct: 414 EGTPAARKKDDVPEEVKKQRLYRLNELVNKQSAASMKDYAGKKVKVLVEGESKKDPEVLA 473

Query: 430 GRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           G +   + V       +IG I++V IT+ K  +L G +V
Sbjct: 474 GYTEKNKLVNFKGPKSSIGKIVEVEITETKTWSLNGVMV 512


>gi|302874905|ref|YP_003843538.1| RNA modification enzyme, MiaB family [Clostridium cellulovorans
           743B]
 gi|307690475|ref|ZP_07632921.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Clostridium
           cellulovorans 743B]
 gi|302577762|gb|ADL51774.1| RNA modification enzyme, MiaB family [Clostridium cellulovorans
           743B]
          Length = 452

 Score =  454 bits (1168), Expect = e-125,   Method: Composition-based stats.
 Identities = 165/463 (35%), Positives = 275/463 (59%), Gaps = 18/463 (3%)

Query: 13  MVSQIVDQCIVPQR---FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNT 69
           M ++ +D   + ++   F + ++GCQMN  DS ++  +    GYE+    ++A +I+ NT
Sbjct: 1   MSNKDIDMTNINKKNNLFCITTFGCQMNEEDSEKLSGVLMEMGYEKTEKREEASIIIFNT 60

Query: 70  CHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVV 127
           C +RE A  KV+  +G ++ +K         L++ + GC+ Q +G  EE++++ P V+++
Sbjct: 61  CAVRENAELKVFGNIGALKKMKEK----NPSLIIGICGCMMQQKGMAEEVIKKYPFVDII 116

Query: 128 VGPQTYYRLPELLERAR-FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGC 186
            G    +  PE L   +  GK VV+         E L I     +R   + AF+TI  GC
Sbjct: 117 FGTHNSHMFPEYLNSVKQHGKSVVEILDKEVGIVEGLPI-----DRLSSIKAFVTIMYGC 171

Query: 187 DKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT 246
           + FCT+C+VPY RG E SR    +++E ++L+  G  E+TLLGQNVN+  GKGL+ E+  
Sbjct: 172 NNFCTYCIVPYVRGRERSRKPEDIINEIKELVKVGYKEVTLLGQNVNS-YGKGLE-EEID 229

Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306
           F+ LL  ++EI+GL R+++ +SHP+D++D +IKA  + D +   +HLPVQ+GS  +LK M
Sbjct: 230 FAKLLRLVNEIEGLERIKFMSSHPKDLTDDVIKAIAECDKVCEQIHLPVQAGSTSLLKRM 289

Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
           NR +T  +Y  ++ RI+   P++A+++D I+GFPGET++D    + LV ++ Y  AF+F 
Sbjct: 290 NRHYTREQYLDLVKRIKENIPNVALTTDLIIGFPGETEEDVEEVISLVKEVRYDSAFTFL 349

Query: 367 YSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EK 425
           YSPR GTP + + +Q+ E++K  R   L  +L +     +    G+++EVL+E   K + 
Sbjct: 350 YSPRKGTPAAELPDQIPEDIKHRRFNALVDELNKIGAEISKEYDGKVVEVLVEGPSKNDD 409

Query: 426 GKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            KL+GR+   + V       NIG +I V+IT  +  +L GE +
Sbjct: 410 NKLMGRTRTGKLVNFTGNPENIGKLINVKITKTQAFSLLGEEI 452


>gi|325123551|gb|ADY83074.1| putative tRNA-i(6)A37 modification enzyme (MiaB) [Acinetobacter
           calcoaceticus PHEA-2]
          Length = 483

 Score =  454 bits (1168), Expect = e-125,   Method: Composition-based stats.
 Identities = 196/471 (41%), Positives = 294/471 (62%), Gaps = 22/471 (4%)

Query: 9   GVAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVL 67
                 +   D  I  ++ ++++ GCQMN YDS RM D+   S GY    + ++AD++++
Sbjct: 17  NTVTQPTHTTDVSI--KKLYIETQGCQMNEYDSHRMADLLGDSHGYVLTTNPNEADILLM 74

Query: 68  NTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVV 127
           NTC IREKA EKV+S LGR R LK+       DL++ V GCVA  EG+ I +R+P V+++
Sbjct: 75  NTCSIREKAQEKVFSELGRWRKLKDK----NPDLVIGVGGCVASQEGDNIQKRAPYVDMI 130

Query: 128 VGPQTYYRLPELLERA--------RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAF 179
            GPQT +RLP++L++         +   ++VD  +   +KF+ L        R  G  AF
Sbjct: 131 FGPQTLHRLPQMLDQHNAQVEKPKKDKIKLVDISFPDIEKFDFLP-----EPRVEGFKAF 185

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
           ++I EGC K+C+FCVVPYTRG E+SR L  V+ E   L + GV EI+LLGQNVN +RG+ 
Sbjct: 186 VSIMEGCSKYCSFCVVPYTRGEEVSRPLDDVLAEIAGLAEKGVREISLLGQNVNGYRGET 245

Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
            +G  CTF +LL  ++EI G+ RLRYTTSHP + SD LI+ + DL  ++ +LHLPVQSGS
Sbjct: 246 FEGSICTFPELLRLVAEIPGIGRLRYTTSHPLEFSDELIQCYEDLPQMVSHLHLPVQSGS 305

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
           + +L++M R HT   Y   I ++R +RPD+ +SSDFI+GFPGETD++F  T+  +  + +
Sbjct: 306 NDVLQAMKRNHTIDVYIDKIAKLRKIRPDMHLSSDFIIGFPGETDENFAETLQFIKDLDF 365

Query: 360 AQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419
             ++SF YS R GTP S++ +   E+VK ERL  +QK +++  +   DA +G+I  VLIE
Sbjct: 366 DHSYSFVYSKRPGTPASDLPDTTPEHVKKERLAQVQKVIKQSSIEKTDAMLGKIERVLIE 425

Query: 420 KHGK-EKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKI-STLYGELV 468
           K    +   L+G +   + V        +G   ++ IT++K  + +YGEL+
Sbjct: 426 KVSDQDPNILLGTADNTRLVTFVGDASWVGRFAEIEITEIKTLNLVYGELL 476


>gi|300855303|ref|YP_003780287.1| putative MiaB protein [Clostridium ljungdahlii DSM 13528]
 gi|300435418|gb|ADK15185.1| putative MiaB protein [Clostridium ljungdahlii DSM 13528]
          Length = 447

 Score =  454 bits (1168), Expect = e-125,   Method: Composition-based stats.
 Identities = 170/450 (37%), Positives = 255/450 (56%), Gaps = 15/450 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
             + FF++++GCQMN  DS ++  M    GY+R      ADLI+ NTC +RE A  KVY 
Sbjct: 8   ATKNFFIETWGCQMNEEDSEKLSGMLKRLGYKRTEDRSSADLIIFNTCCVRENAELKVYG 67

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQA--EGEEILRRSPIVNVVVGPQTYYRLPELL 140
            LG ++ LK        +L++ + GC+ Q     + I++R P V+++ G    Y+ PE L
Sbjct: 68  NLGMLKKLKIK----NPNLIIAICGCMMQQKDMAKNIIKRFPFVDIIFGTHNAYKFPEYL 123

Query: 141 ERARFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
            R +     V++         E L I     +R+  V AF+TI  GC+ FCT+C+VPY R
Sbjct: 124 NRVQQENTSVIEIQDKESGIVEGLPI-----DRESNVKAFVTITYGCNNFCTYCIVPYVR 178

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G E SR    +  E ++LI  G  EITLLGQNVN+  GK L+  K +FSDLL  ++ I G
Sbjct: 179 GRERSRKPEDIEKEIKELISKGYKEITLLGQNVNS-YGKTLEP-KVSFSDLLRRINSIDG 236

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           + R+R+ TS P+D+++ ++ A  +   +   +HLPVQSGS  +LK MNR ++   Y  ++
Sbjct: 237 VERIRFMTSQPKDLTEDVVDAVAECSKVCEQIHLPVQSGSTSLLKKMNRSYSKEGYLNLV 296

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
             IR   PD AI++D IVGFPGET++DF  T++L  ++ Y  AF+F YS R GTP  +  
Sbjct: 297 KMIREKVPDAAITTDIIVGFPGETEEDFEETLNLAREVQYDSAFTFIYSKRKGTPAYDFE 356

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLVGRSPWLQSV 438
           +Q+ E++K ER   L + + E     N    G+  E+L+E   K    KL GR+   + V
Sbjct: 357 DQIPEDIKHERFNRLVEVINESSARKNKDYEGRTEEILVEGTSKNDNTKLTGRTRSGKLV 416

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  +IG ++KV+IT     +L GE +
Sbjct: 417 NFKGNKKDIGKLVKVQITKATSFSLLGEEI 446


>gi|237716928|ref|ZP_04547409.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262405697|ref|ZP_06082247.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacteroides sp. 2_1_22]
 gi|294810637|ref|ZP_06769287.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacteroides xylanisolvens
           SD CC 1b]
 gi|229442911|gb|EEO48702.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262356572|gb|EEZ05662.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacteroides sp. 2_1_22]
 gi|294442179|gb|EFG10996.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacteroides xylanisolvens
           SD CC 1b]
          Length = 457

 Score =  454 bits (1168), Expect = e-125,   Method: Composition-based stats.
 Identities = 160/446 (35%), Positives = 254/446 (56%), Gaps = 10/446 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F+++YGCQMNV DS  +  +    GY    ++++AD + +NTC IR+ A +K+ + L
Sbjct: 20  KKLFIETYGCQMNVADSEVIASVMQMAGYSVAETLEEADAVFMNTCSIRDNAEQKILNRL 79

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
               +LK  + +    L+V V GC+A+   ++++     V++VVGP  Y  LP+L+    
Sbjct: 80  EFFHSLKKKKKR----LIVGVLGCMAERVKDDLITNH-HVDLVVGPDAYLTLPDLIAAVE 134

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G++ ++ + S  + +  +       N   G   F++I  GC+ FCT+C+VPYTRG E S
Sbjct: 135 TGEKAINVELSTTETYRDVIPSRICGNHISG---FVSIMRGCNNFCTYCIVPYTRGRERS 191

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R +  +++E   L+  G  E+TLLGQNVN++R +   GE  TF  LL +++E    VR+R
Sbjct: 192 RDVESILNEVADLVAKGYKEVTLLGQNVNSYRFERPTGEVVTFPMLLRTVAEAAPGVRIR 251

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +TTSHP+DMSD  ++    +  +  ++HLPVQSGS RILK MNR++T   Y   +  I+ 
Sbjct: 252 FTTSHPKDMSDETLEVIAQVPNVCKHIHLPVQSGSSRILKLMNRKYTREWYLDRVAAIKR 311

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN-MLEQVD 383
           + PD  +++D   GF  ET+ D   ++ L++  GY  AF FKYS R GT  S  + + V 
Sbjct: 312 IIPDCGLTTDIFSGFHSETEKDHAMSLSLMEACGYDAAFMFKYSERPGTYASKHLEDNVP 371

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNS 442
           E VK  RL  +           N  C+G+  EVL+E   K    +L GR+   + VV + 
Sbjct: 372 EEVKVRRLNEIIALQNRLSAESNQRCIGKTYEVLVEGVSKRSRDQLFGRTEQNRVVVFDR 431

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
             H +GD + VR+T+   +TL GE +
Sbjct: 432 GTHRVGDFVNVRVTEASSATLKGEEI 457


>gi|268317612|ref|YP_003291331.1| RNA modification enzyme, MiaB family [Rhodothermus marinus DSM
           4252]
 gi|262335146|gb|ACY48943.1| RNA modification enzyme, MiaB family [Rhodothermus marinus DSM
           4252]
          Length = 482

 Score =  454 bits (1168), Expect = e-125,   Method: Composition-based stats.
 Identities = 163/467 (34%), Positives = 263/467 (56%), Gaps = 10/467 (2%)

Query: 5   IKLIGVAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADL 64
           ++++          ++    ++ ++++YGCQMNV DS  +  +  + GY      + AD+
Sbjct: 7   LEILDDLDAPKLTAEEAEGARKVYIETYGCQMNVSDSEIVAAILRAHGYGLTRDPEQADV 66

Query: 65  IVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIV 124
           ++LNTC IRE A +KV   L   R  K    K+   L + V GC+A+    ++L    +V
Sbjct: 67  VLLNTCAIRENAEQKVRHRLDIFRAHKR---KQRPGLRIGVLGCMAERLRHKLLEEEQLV 123

Query: 125 NVVVGPQTYYRLPELLERARF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQ 183
           ++VVGP  Y  LP LLE A   G+  V+   S E+ +  ++ V        GVTA+++I 
Sbjct: 124 DLVVGPDAYRDLPRLLEEAETTGQAAVNVQLSREETYADIAPVRYD---SNGVTAYVSIM 180

Query: 184 EGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
            GCD  C FCVVP+TRG E SR +  ++DE  +L++ G  E+T+LGQNVN+      +G 
Sbjct: 181 RGCDNMCAFCVVPFTRGRERSRPVQSILDECARLVEEGYREVTVLGQNVNS-YRYTENGT 239

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
             TF +LLY +S I   +R+RY+TSHP+D SD L+  H +   +  Y+HLPVQ G+  +L
Sbjct: 240 VVTFPELLYRVSLISPELRVRYSTSHPKDCSDELLHVHRERHNVCNYIHLPVQHGNTDVL 299

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           + M R +T  +Y  +++R R + P I++S+D I GF GET+++ R T+ L++++ +  A+
Sbjct: 300 RRMRRTYTREQYLALVERARRIVPGISLSTDIIAGFCGETEEEHRDTLSLLEEVRFDHAY 359

Query: 364 SFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422
            F YS R GT  +    + V   VK  RL  + +      +  N   +G++  VL+E   
Sbjct: 360 MFMYSERPGTYAARKYKDDVPLEVKKRRLQEIIELQTRISLENNRKEIGRVHTVLVEGPS 419

Query: 423 KE-KGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           K    +L GR+   + VV +  +   GD ++VRITD   +TL+GE +
Sbjct: 420 KRSPEQLCGRTDTNKMVVFDRHDFRPGDYVRVRITDCTSATLFGEPL 466


>gi|256820151|ref|YP_003141430.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Capnocytophaga
           ochracea DSM 7271]
 gi|256581734|gb|ACU92869.1| RNA modification enzyme, MiaB family [Capnocytophaga ochracea DSM
           7271]
          Length = 482

 Score =  454 bits (1168), Expect = e-125,   Method: Composition-based stats.
 Identities = 165/459 (35%), Positives = 255/459 (55%), Gaps = 22/459 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ +++SYGCQMN  DS  +  +    GY   +++D+ADL+++NTC +REKA + +   L
Sbjct: 24  KKLYIESYGCQMNFSDSEIVASILSKAGYNTTDTVDEADLVLINTCSVREKAEQTIRKRL 83

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            +    K         + V V GC+A+      L    IV++VVGP  Y  LP LLE   
Sbjct: 84  EQFNVYKRK----KPAMKVGVLGCMAERVKHAFLEEEKIVDMVVGPDAYKDLPNLLEEVE 139

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G+  V+   S ++ +  ++ +        GVTAF++I  GCD  CTFC+VP+TRG E S
Sbjct: 140 EGREAVNVILSKDETYADIAPIRLN---SNGVTAFVSITRGCDNMCTFCIVPFTRGRERS 196

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK-------------CTFSDLL 251
           R    +++E   L   G  E+TLLGQNV+++   G   +K               F+ LL
Sbjct: 197 RDPYSILNEIADLQARGFKEVTLLGQNVDSYLWYGGGLKKDFSKASEMQQATAINFAKLL 256

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
             ++  +  +R+R++TS+P+DM+  +I        +  Y+HLPVQSGS+RILK+MNR HT
Sbjct: 257 DMVAIAQPEMRIRFSTSNPQDMTLDVIDTMAKHPNICKYIHLPVQSGSNRILKAMNRLHT 316

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
             EY  +ID IR   P+ AIS D I GFP ET++D + T+ L++ + Y   F F YS R 
Sbjct: 317 REEYFALIDSIRERIPECAISQDMIAGFPTETEEDHQDTLSLMEYVKYDFGFMFAYSERP 376

Query: 372 GTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLV 429
           GT  +  + + V E VK  RL  +    ++  +    A +G+ +EVLIE + K+   + +
Sbjct: 377 GTLAARKIEDDVPEEVKKRRLAEIIDLQQKHSLYRTQAQIGKTVEVLIEGNSKKSDKEWM 436

Query: 430 GRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           GR+     VV   +++ IGD + V+ITD   +TL G+ V
Sbjct: 437 GRNSQNTVVVFPKEDYKIGDFVMVKITDCTSTTLIGKAV 475


>gi|146297053|ref|YP_001180824.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|229890495|sp|A4XL48|MIAB_CALS8 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|145410629|gb|ABP67633.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 471

 Score =  454 bits (1168), Expect = e-125,   Method: Composition-based stats.
 Identities = 167/461 (36%), Positives = 277/461 (60%), Gaps = 12/461 (2%)

Query: 10  VAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNT 69
           +  M S+   +    + + + +YGCQMNV+DS ++  M  + GY    ++++ADLI+ NT
Sbjct: 21  IEKMNSEYYFKNGKNKTYHIITYGCQMNVHDSEKLAGMLNAMGYVETQNLEEADLIIFNT 80

Query: 70  CHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQA--EGEEILRRSPIVNVV 127
           C +RE A  +VY  +G ++ LK+       +L++ V GC+ Q     +++ +  P ++++
Sbjct: 81  CAVREHAESRVYGNIGPLKRLKDK----KPELIIGVCGCMPQQLEVAQKLAKVFPFLDII 136

Query: 128 VGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCD 187
            G ++ ++ P+LL +A   K+ V      ED    + +      R+ GV+AF+ I  GC+
Sbjct: 137 FGTKSLHKFPQLLYKAITTKKTVIDVAEDED----VVVEGIPTARREGVSAFVNIIYGCN 192

Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTF 247
            FC++C+VPY RG E SR   +++ E ++L  NGV E+TLLGQNVN++     DG    F
Sbjct: 193 NFCSYCIVPYVRGRERSRRPEEIIFEIQQLAANGVKEVTLLGQNVNSYGKDLPDGIP--F 250

Query: 248 SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307
             LL  ++ I+G+ R+R+ TSHP+D+SD LI A  DL+ +  ++HLPVQSGS RIL+ MN
Sbjct: 251 YKLLEKVNAIEGIERIRFVTSHPKDLSDELIFAMRDLEKVCEHIHLPVQSGSTRILRQMN 310

Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           R +T  +Y +++++++   PDIAI++D IVGFPGET++DF  T+D+V K+ +  A++F Y
Sbjct: 311 RHYTKEDYLRLVEKLKENIPDIAITTDIIVGFPGETEEDFEDTLDVVRKVEFDSAYTFIY 370

Query: 368 SPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK 427
           S R GT  + M  QV + VK ER   L K + E  +  N   +G++ E+LI+ + K    
Sbjct: 371 SKRKGTKAAQMPNQVPDEVKHERFQRLVKLVEEIALKKNQQMLGKVCEILIDGYSKRNNL 430

Query: 428 LVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           L GR+   + V +   +  +   + V+I +     LYGE++
Sbjct: 431 LEGRTRTNKVVNVKCSDEFMYKFVNVKILEASRHWLYGEVI 471


>gi|328885508|emb|CCA58747.1| tRNA-i(6)A37 methylthiotransferase [Streptomyces venezuelae ATCC
           10712]
          Length = 509

 Score =  454 bits (1167), Expect = e-125,   Method: Composition-based stats.
 Identities = 174/451 (38%), Positives = 258/451 (57%), Gaps = 20/451 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVN--SMDDADLIVLNTCHIREKAAEKVYS 82
           + + +++YGCQMNV+DS R+  +    GY +    S  DAD++V NTC +RE A  K+Y 
Sbjct: 17  KTYEIRTYGCQMNVHDSERLSGLLEEAGYVKAPKGSDGDADVVVFNTCAVRENADNKLYG 76

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            LGR+  +K         + + V GC+AQ + E I+ ++P V+VV G     +LP LLER
Sbjct: 77  NLGRLAPMKT----TRPGMQIAVGGCLAQKDRETIVSKAPWVDVVFGTHNIGKLPVLLER 132

Query: 143 ARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           AR  +   ++   S+E     L        R+    A+++I  GC+  CTFC+VP  RG 
Sbjct: 133 ARVQEEAQIEIAESLEAFPSTLPT-----RRESAYAAWVSISVGCNNTCTFCIVPALRGK 187

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E  R    ++ E   L+  GV EITLLGQNVNA  G  L G++  FS LL +  +I+GL 
Sbjct: 188 EEDRRPGDILAEIEALVAEGVSEITLLGQNVNA-YGSDL-GDREAFSKLLRACGQIEGLE 245

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+T+ HPRD +D +I A  +   +MP LH+P+QSGSD IL++M R +    +  II++
Sbjct: 246 RVRFTSPHPRDFTDDVIAAMAETPNVMPQLHMPLQSGSDSILRAMRRSYRQERFLGIIEK 305

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R+  P  AIS+D IVGFPGET++DF  TM  V +  +A AF+F+YS R GTP ++M  Q
Sbjct: 306 VRAAIPHAAISTDIIVGFPGETEEDFEQTMHTVREARFANAFTFQYSKRPGTPAADMEGQ 365

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKG---KLVGRSPWLQS 437
           + + V  ER + L     E     N   VG+ +EV++ E  G++ G   +L GR+P  + 
Sbjct: 366 IPKEVVQERYMRLVALQEEISWEENKKQVGRTLEVMVAEGEGRKDGATDRLSGRAPDNRL 425

Query: 438 VVL--NSKNHNIGDIIKVRITDVKISTLYGE 466
           V      ++   GD++ V IT      L  E
Sbjct: 426 VHFTKPDEDVRPGDVVTVEITYAAPHHLLAE 456


>gi|160947537|ref|ZP_02094704.1| hypothetical protein PEPMIC_01471 [Parvimonas micra ATCC 33270]
 gi|158446671|gb|EDP23666.1| hypothetical protein PEPMIC_01471 [Parvimonas micra ATCC 33270]
          Length = 441

 Score =  454 bits (1167), Expect = e-125,   Method: Composition-based stats.
 Identities = 170/447 (38%), Positives = 257/447 (57%), Gaps = 14/447 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +++ + +YGCQMN +DS ++  +  + GY + + ++ +D I+ NTC +RE A  KVY  L
Sbjct: 6   KKYTIITYGCQMNHHDSEKISYLLETLGYTKEDDLEKSDFIIYNTCLVRENAELKVYGQL 65

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAE--GEEILRRSPIVNVVVGPQTYYRLPELLER 142
           G ++NLK        ++++ V GC+ Q       I+ +   V+++ G +   RLP L+ R
Sbjct: 66  GALKNLKRK----KPEMIIAVCGCMMQTGDARATIISKYKHVDIIFGTKNISRLPSLIAR 121

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            R    V+      +   +   I     NR+    A++ I  GC+ +CTFC+VPY RG E
Sbjct: 122 HRSTGEVIVDIEEEDIIDDETPI-----NREHPFIAYVNIMTGCNNYCTFCIVPYARGKE 176

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           ISR+   +++E + L   G  EITLLGQNVN+  GK L   K TF +LL  ++EI G+ R
Sbjct: 177 ISRTPESIINEIKDLAKKGYKEITLLGQNVNS-YGKTL-RPKVTFPELLKMVNEIDGIER 234

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+ TSHP+D SD LI A   LD +   +HLP QSGS++ILK M+R +T   Y ++I ++
Sbjct: 235 IRFLTSHPKDCSDELIDAMASLDKVCENIHLPFQSGSNKILKDMHRVYTREHYLELIRKL 294

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           +   P+I +S+D IVGFPGET++DF  T+ +V+K+GY Q F+F YS R GT  + M  Q+
Sbjct: 295 KEKVPNITLSTDIIVGFPGETEEDFEDTLSMVEKVGYDQGFTFLYSIRKGTKAAEMQNQI 354

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441
              VK ER   L   + +     N  C+GQ +EVL+E   K     L GR+   + V   
Sbjct: 355 PHEVKQERFQRLIDSMYKIFYEKNKECLGQTLEVLVEGISKNNPDILTGRTRGYKLVHFK 414

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
               NIG ++ V+IT      L GE+V
Sbjct: 415 GGKRNIGQLVNVKITGHNSFALEGEIV 441


>gi|163781959|ref|ZP_02176959.1| oxaloacetate decarboxylase [Hydrogenivirga sp. 128-5-R1-1]
 gi|159883179|gb|EDP76683.1| oxaloacetate decarboxylase [Hydrogenivirga sp. 128-5-R1-1]
          Length = 441

 Score =  454 bits (1167), Expect = e-125,   Method: Composition-based stats.
 Identities = 176/446 (39%), Positives = 276/446 (61%), Gaps = 9/446 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + +++F+K++GCQMN  DS R+  +  + GYE   S ++ADLI+LNTC IREK  +KV S
Sbjct: 1   MGKKYFIKTFGCQMNFNDSERIRGILRTLGYEPAESWEEADLILLNTCTIREKPDQKVLS 60

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +G  + +K        + L+ V+GC+AQ  G E+++++P V+++      ++LPEL+ +
Sbjct: 61  HIGEYKKIKER----NPNALIAVSGCLAQRAGWELVQKAPAVDIMFSSFNMHQLPELINQ 116

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           A+ G + V    +  +  +  ++ D    R     A++TI +GCDK CT+CVVP TRG E
Sbjct: 117 AQAGYKAVAILEAPPE--DEDAVWDFPTERDNPYCAYVTIIKGCDKNCTYCVVPKTRGKE 174

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SRS+  +++E +KL+D GV EI LLGQNV AW GK  +     FS+LLY +S++ G+ R
Sbjct: 175 RSRSMYSILEEVKKLVDEGVREIHLLGQNVTAW-GKDFE-RPIPFSELLYEVSKVDGVER 232

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TT HP+D++D  ++A  D+  +   LHLP Q+GSDRIL+ M+R++T   Y   I+R+
Sbjct: 233 IRFTTGHPKDLTDDTVEAMADIPQVCNALHLPFQAGSDRILELMDRKYTKEFYLDRINRL 292

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           +    DIA+S+D IVGFP ETD+DF  T+D+V ++ + Q FSFKYSPR GTP + M  QV
Sbjct: 293 KEAVEDIALSTDIIVGFPTETDEDFEHTLDVVREVEFEQVFSFKYSPRPGTPAAEMEGQV 352

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
            + VK ER+  L +  +      +    G + +VL+E+  + +G L+GR+   +      
Sbjct: 353 PDEVKTERMSRLLELQKAIMGKLSKRYEGTVQKVLVEEE-RGEGTLIGRTTTNKWATFKG 411

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
               +G I+KVR+       L  EL+
Sbjct: 412 GRELLGKIVKVRVESASPFNLECELL 437


>gi|295085878|emb|CBK67401.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacteroides xylanisolvens
           XB1A]
          Length = 460

 Score =  453 bits (1166), Expect = e-125,   Method: Composition-based stats.
 Identities = 162/447 (36%), Positives = 256/447 (57%), Gaps = 10/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F+++YGCQMNV DS  +  +    GY    ++++AD + +NTC IR+ A +K+ + L
Sbjct: 20  KKLFIETYGCQMNVADSEVIASVMQMAGYSVAETLEEADAVFMNTCSIRDNAEQKILNRL 79

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
               +L     K+   L+V V GC+A+   ++++     V++VVGP  Y  LP+L+    
Sbjct: 80  EFFHSL----KKKKKHLIVGVLGCMAERVKDDLITNH-HVDLVVGPDAYLTLPDLIAAVE 134

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G++ ++ + S  + +  +       N   G   F++I  GC+ FCT+C+VPYTRG E S
Sbjct: 135 TGEKAINVELSTTETYRDVIPSRICGNHISG---FVSIMRGCNNFCTYCIVPYTRGRERS 191

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R +  +++E   L+  G  E+TLLGQNVN++R +   GE  TF  LL +++E    VR+R
Sbjct: 192 RDVESILNEVADLVAKGYKEVTLLGQNVNSYRFERPTGEVVTFPMLLRTVAEAAPGVRIR 251

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +TTSHP+DMSD  ++    +  +  ++HLPVQSGS RILK MNR++T   Y   +  I+ 
Sbjct: 252 FTTSHPKDMSDETLEVIAQVPNVCKHIHLPVQSGSSRILKLMNRKYTREWYLDRVAAIKR 311

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN-MLEQVD 383
           + PD  +++D   GF  ET++D   ++ L+++ GY  AF FKYS R GT  S  + + V 
Sbjct: 312 IIPDCGLTTDIFSGFHSETEEDHALSLSLMEECGYDAAFMFKYSERPGTYASKHLEDNVP 371

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNS 442
           E VK  RL  +           N  C+G+  EVL+E   K    +L GR+   + VV + 
Sbjct: 372 EEVKVRRLNEIIALQNRLSAESNQRCIGKTYEVLVEGVSKRSRDQLFGRTEQNRVVVFDR 431

Query: 443 KNHNIGDIIKVRITDVKISTLYGELVV 469
             H +GD + VR+T+   +TL GE VV
Sbjct: 432 GTHRVGDFVNVRVTEASSATLKGEEVV 458


>gi|317121910|ref|YP_004101913.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Thermaerobacter
           marianensis DSM 12885]
 gi|315591890|gb|ADU51186.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Thermaerobacter
           marianensis DSM 12885]
          Length = 517

 Score =  453 bits (1166), Expect = e-125,   Method: Composition-based stats.
 Identities = 180/446 (40%), Positives = 253/446 (56%), Gaps = 16/446 (3%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           + + ++GCQMN  DS  +       G      +D+ADLI+LNTC +RE A EKV+  +G 
Sbjct: 58  YKILTWGCQMNERDSEILAGQLEEMGMVPAGLLDEADLILLNTCAVRETAEEKVFGTIGY 117

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           ++ LK        DL++ + GC+AQ E     I R  P V++V G    ++LP+L+ER R
Sbjct: 118 LKVLKQQ----NPDLILGLCGCMAQEESTIRRIQRYYPHVDLVFGTHNVHQLPQLIERVR 173

Query: 145 FGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             +  VVD   + E   E L        R  GV A++ I  GCDK+CTFC+VP TRG E 
Sbjct: 174 REEGMVVDVWQAAEGVVEHLP-----SRRAGGVKAWVNIIYGCDKYCTFCIVPTTRGRER 228

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR    V+ E   L   G  E+TLLGQNVN+  GK L G    F+DLL  L  + G+  +
Sbjct: 229 SRRPEDVIAEVEYLAAEGYKEVTLLGQNVNS-YGKDL-GTGFDFADLLARLDRVPGIRWI 286

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           RYTTSHPRD +D LI+   + D +  + HLPVQSGS+ +L+ MNRR+T   Y ++I++IR
Sbjct: 287 RYTTSHPRDFTDKLIRTIAESDKVTEHFHLPVQSGSNAVLRWMNRRYTREYYLRLIEKIR 346

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              PD  I++D IVGFP ET++DFR T+DLV ++ Y  AF+F YSPR GTP +    Q+ 
Sbjct: 347 EAVPDACITTDIIVGFPKETEEDFRQTLDLVRQVEYDNAFTFIYSPREGTPAARWP-QLP 405

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVLNS 442
             VK ERL  L +      +  N   VGQ   VLI+   K+  + L  R+   + V++  
Sbjct: 406 REVKQERLERLMEVQYAINLRKNQRLVGQTAVVLIDGPSKKNPRVLSARTRTNKLVLVPG 465

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
           +    G   +V IT  +  TL G ++
Sbjct: 466 EAAWSGRFARVEITRAQTFTLEGRML 491


>gi|222529490|ref|YP_002573372.1| (dimethylallyl)adenosine tRNA methylthiotransferase
           [Caldicellulosiruptor bescii DSM 6725]
 gi|222456337|gb|ACM60599.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Caldicellulosiruptor
           bescii DSM 6725]
          Length = 471

 Score =  453 bits (1166), Expect = e-125,   Method: Composition-based stats.
 Identities = 172/446 (38%), Positives = 273/446 (61%), Gaps = 12/446 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +++ + +YGCQMNV+DS ++  M  + GY    ++ +ADLI+ NTC +RE A  +VY  +
Sbjct: 36  KKYHIVTYGCQMNVHDSEKLAGMLNAMGYIETENIQEADLIIFNTCSVREHAESRVYGNI 95

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAE--GEEILRRSPIVNVVVGPQTYYRLPELLER 142
           G ++ LK        DL+V V GC+ Q     +++ +  P ++++ G ++ ++ P+LL  
Sbjct: 96  GPLKRLKEK----KPDLIVGVCGCMPQQVEVAQKLAKLFPFLDIIFGTKSLHKFPQLLYT 151

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           A   K+ V      ED    + +      R++GV+AF+ I  GC+ FC++C+VPY RG E
Sbjct: 152 AITEKKTVIEVSEDED----VVVEGIPTARRQGVSAFVNIIYGCNNFCSYCIVPYVRGRE 207

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR   +++ E  +L  NG+ E+TLLGQNVN+  GK L G   TF  LL  ++EIKG+ R
Sbjct: 208 RSRRPEEIIYEIEQLAQNGIKEVTLLGQNVNS-YGKDL-GNSITFPKLLEKVNEIKGIER 265

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+ TSHP+D+SD LI A  DL+ +  ++HLPVQSGS RILK+MNR +T  +Y ++++++
Sbjct: 266 IRFVTSHPKDLSDELIVAMRDLEKVCEHIHLPVQSGSTRILKAMNRHYTKEDYLRLVEKL 325

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           ++  PDIAI++D IVGFPGETD+DF  T+D+  K+ +  A++F YS R GTP   M  QV
Sbjct: 326 KTNIPDIAITTDIIVGFPGETDEDFEDTLDVCRKVEFDSAYTFIYSKRRGTPAEKMPNQV 385

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
            +++K +R   L K + E  +  N   +G+  E+LI+ H K    L GR+   + V +  
Sbjct: 386 PDDIKYQRFQRLVKLVEEIALKKNRQMLGKTYEILIDSHSKRNNLLAGRTRTNKVVNVKC 445

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
               +   + V+I +     LYGE++
Sbjct: 446 SEEFMFKFVNVKIFEAAEHWLYGEVI 471


>gi|255657963|ref|ZP_05403372.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Mitsuokella multacida DSM
           20544]
 gi|260850164|gb|EEX70171.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Mitsuokella multacida DSM
           20544]
          Length = 444

 Score =  453 bits (1166), Expect = e-125,   Method: Composition-based stats.
 Identities = 174/443 (39%), Positives = 270/443 (60%), Gaps = 14/443 (3%)

Query: 28  FVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRI 87
           ++  YGCQMN  D+ RM     + GYER  SM++ADLI++NTC +RE A ++VY  +G I
Sbjct: 13  YLLVYGCQMNQSDAERMMGQLRTIGYERTESMEEADLILINTCCVRETAEDRVYGKIGEI 72

Query: 88  RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147
           + LK    +E  +L+  + GC+AQ EG+ +++R+P ++ V+G    + L  +++  +   
Sbjct: 73  KRLK----RENPELIFGITGCMAQKEGDALIKRAPHIDFVLGTNKVHELTHVVQEIQAEH 128

Query: 148 -RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
             VVD      +  + + +      R   ++A++ I  GC+ FCT+C+VPY RG E SR 
Sbjct: 129 GHVVDVQLGETELPDDVPVA-----RAGSLSAWVPIMYGCNNFCTYCIVPYVRGRERSRL 183

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
              +V E  + + NG  E+TLLGQNVN++   G D +   F+DLL  + ++ G+ R+R+ 
Sbjct: 184 PEDIVHEVEEAVKNGYEEVTLLGQNVNSY---GKDHKLADFADLLKMVDKVPGIRRVRFM 240

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
           TSHP+D+SD +I A  D + L  ++HLPVQ GS+RILK+MNR +T   YR ++ RIR+  
Sbjct: 241 TSHPKDLSDKVIAAIRDGEHLCEHIHLPVQYGSNRILKAMNRVYTVESYRDLVRRIRAAI 300

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           PD+++++D IVGFPGETD+DF+  +D + +I Y  A++F YS R GTP + M  QVDE+V
Sbjct: 301 PDVSLTTDLIVGFPGETDEDFQQMLDFLREIRYDSAYTFIYSKRSGTPAATMENQVDESV 360

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVLNSKNH 445
           K ERL  L     E  ++ N+  +G+ +E+++E   K E    +GR+   + V+      
Sbjct: 361 KKERLNALMAVQNEISLAINEKLLGKTLEIMVEGPSKNEPSVWMGRTRTNKIVLFAHAGE 420

Query: 446 NIGDIIKVRITDVKISTLYGELV 468
             GD I VRIT  +   L GE V
Sbjct: 421 KPGDFIDVRITHPQTWVLKGERV 443


>gi|169827222|ref|YP_001697380.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Lysinibacillus
           sphaericus C3-41]
 gi|229890559|sp|B1HR59|MIAB_LYSSC RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|168991710|gb|ACA39250.1| UPF0004 protein [Lysinibacillus sphaericus C3-41]
          Length = 514

 Score =  453 bits (1166), Expect = e-125,   Method: Composition-based stats.
 Identities = 168/448 (37%), Positives = 260/448 (58%), Gaps = 15/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + F++++YGCQMN +D+  M  +F   GY     +++AD+++LNTC IRE A  KV+  L
Sbjct: 68  RTFYIRTYGCQMNEHDTEVMAGIFMQLGYTPTEIIEEADVVLLNTCAIRENAENKVFGEL 127

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G +   K        ++L+ V GC++Q E    +ILR  P V++V G    +RLP +L+ 
Sbjct: 128 GFLLKYKRK----NPEMLIGVCGCMSQEESVVNKILRSYPHVDMVFGTHNIHRLPNILKE 183

Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           A   K +V   +S E D  E L        R   + A++ I  GCDKFCT+C+VPYTRG 
Sbjct: 184 AYMSKEMVVEVWSKEGDVIENLP-----KKRLGSIKAWVNIMYGCDKFCTYCIVPYTRGK 238

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR   +++ E R+L   G  EI LLGQNVNA  GK  +  +    DL+ +L +I  + 
Sbjct: 239 ERSRRPEEIIAEVRELAAAGYQEIMLLGQNVNA-YGKDFEDIEYRLGDLMDALRKID-IP 296

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHPRD  D LI+       L+ ++HLPVQSGS+ ILK M R++T   +  ++++
Sbjct: 297 RIRFTTSHPRDFDDHLIEVLAKRGNLVEHIHLPVQSGSNDILKIMARKYTREHFLTLVEK 356

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I++  P++ +++D IVG+P ET++ F  T+ L  ++G+  AF++ YSPR GTP + M++ 
Sbjct: 357 IKAAIPEVTLTTDIIVGYPNETEEQFEETLSLYREVGFEAAFTYIYSPREGTPAAKMVDN 416

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVL 440
           V E VK ERL  L + + E      +   G+++EVL+E   K     L G +   + V  
Sbjct: 417 VPEEVKKERLQRLNEVVGEYSRKALERLNGEVVEVLVEGTSKRRDDVLAGYTRKNRLVNF 476

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 IG ++KV+I +    +L GE +
Sbjct: 477 KGPAEVIGQLVKVKIIETTSYSLTGEFL 504


>gi|22298858|ref|NP_682105.1| hypothetical protein tlr1315 [Thermosynechococcus elongatus BP-1]
 gi|81743104|sp|Q8DJB2|MIAB_THEEB RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|22295039|dbj|BAC08867.1| tlr1315 [Thermosynechococcus elongatus BP-1]
          Length = 450

 Score =  453 bits (1165), Expect = e-125,   Method: Composition-based stats.
 Identities = 177/457 (38%), Positives = 266/457 (58%), Gaps = 23/457 (5%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           +P+R+++ ++GCQMN  DS RM  +  + G E     D+AD+++ NTC IR+ A +K+YS
Sbjct: 1   MPRRYYITTFGCQMNKADSERMAGILEAMGLELAAEPDEADVLLYNTCTIRDNAEQKLYS 60

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
           +LGR    K+       +L ++VAGCVAQ EGE++LRR P V++V+GPQ   RL ELLE+
Sbjct: 61  YLGRQAKRKHQD----PNLTLIVAGCVAQQEGEQLLRRVPEVDLVMGPQYANRLGELLEQ 116

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGG--YNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
              G +VV T        E L IV+      R   VTA++ +  GC++ CT+CVVP  RG
Sbjct: 117 VWNGSQVVAT--------EPLQIVEDITKPRRDSTVTAWVNVIYGCNERCTYCVVPGVRG 168

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG------EKCTFSDLLYSL 254
            E SR    +  E  +L   G  E+TLLGQN++A  G+ L G       + TF+DLLY +
Sbjct: 169 QEQSRRPEAIRAEIEELAAQGYKEVTLLGQNIDA-YGRDLPGITPEGRRQHTFTDLLYYI 227

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
            ++ G+ R+R+ TSHPR  ++ LI+A  +L  +  + H+P QSG + ILK+M R +T   
Sbjct: 228 HDVAGIERIRFATSHPRYFTERLIRACAELPKVCKHFHIPFQSGDNEILKAMARGYTRER 287

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
           Y  II+ IR   PD AIS+D IVGFPGET++ F+ T+DLV  +G+ Q  +  YSPR  TP
Sbjct: 288 YLHIIETIRRYMPDAAISADAIVGFPGETEEQFQRTLDLVAAVGFDQLNTAAYSPRPNTP 347

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSP 433
            +    QV E +K +RL  L   + +     +   +G+   VL+E    K+  ++ GR+ 
Sbjct: 348 AATWENQVPEAIKEDRLQRLNHLVAKIAGDRSQRYLGREEVVLVEGVNPKDAQQVYGRTD 407

Query: 434 WLQSVVLNSK-NHNIGDIIKVRITDVKISTLYGELVV 469
             +   L        G +++VRIT+ +  +L G  + 
Sbjct: 408 GNRLTYLPGDIETLRGQLVRVRITEARAFSLSGVPLA 444


>gi|86607496|ref|YP_476259.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Synechococcus
           sp. JA-3-3Ab]
 gi|123504633|sp|Q2JQX6|MIAB_SYNJA RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|86556038|gb|ABD00996.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Synechococcus sp.
           JA-3-3Ab]
          Length = 453

 Score =  453 bits (1165), Expect = e-125,   Method: Composition-based stats.
 Identities = 167/449 (37%), Positives = 256/449 (57%), Gaps = 14/449 (3%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           +    ++  ++GCQMN  DS RM  +  S GY        ADL++ NTC IR+ A +KVY
Sbjct: 1   MAAPTYYTITFGCQMNRADSERMAGILESLGYVPAEDELQADLVLFNTCTIRDNAEQKVY 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S+LG    ++  R ++   + ++VAGCVAQ EGE +LRR P +++V+GPQ   RL +LL 
Sbjct: 61  SYLG----IQAQRKRKNPAIKLIVAGCVAQQEGERLLRRVPELDLVMGPQYVNRLGDLLA 116

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           +   G +VV T+    +  E ++       R   VTA++ +  GC++ CT+C+VP  RG 
Sbjct: 117 QVEAGNQVVATE--PVEIPEDITKPR----RDSRVTAWINVIYGCNERCTYCIVPLVRGR 170

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR    +  E   +   G  E+TLLGQN++A  G+ LD  K   + LL  +  ++G+ 
Sbjct: 171 EQSRQPQAIRAEIEDVARAGYREVTLLGQNIDA-YGRDLDP-KTNLASLLRFVHSVEGIE 228

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+ TSHPR  ++ LI    +L  +  + H+P Q+GSD +LK M R +T   YRQ+I  
Sbjct: 229 RIRFATSHPRYFTEELIATCAELPKVCEHFHIPFQAGSDAVLKRMRRGYTQERYRQLIQL 288

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           IR   P+  IS+D IVGFPGET+  F+ T+ LV  IG+    +  YSPR GTP +   +Q
Sbjct: 289 IRQYMPEATISADAIVGFPGETEAQFQETLQLVQDIGFDFLNTAAYSPRPGTPAAEWPDQ 348

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVL 440
           V E  K++RL  L + + E   + +   +GQ+ EVL+E    K   + +GR+   + V  
Sbjct: 349 VPEEEKSDRLQRLNRLVAEVAAARSARLLGQVQEVLVEGPNPKNPRQAMGRTRGNRIVFF 408

Query: 441 NSKNHNI-GDIIKVRITDVKISTLYGELV 468
           +     + G ++ VRIT  +  +L GE+V
Sbjct: 409 DGDPEQLQGSLVPVRITATRAFSLSGEIV 437


>gi|320157147|ref|YP_004189526.1| tRNA-i(6)A37 methylthiotransferase [Vibrio vulnificus MO6-24/O]
 gi|319932459|gb|ADV87323.1| tRNA-i(6)A37 methylthiotransferase [Vibrio vulnificus MO6-24/O]
          Length = 461

 Score =  452 bits (1164), Expect = e-125,   Method: Composition-based stats.
 Identities = 190/436 (43%), Positives = 273/436 (62%), Gaps = 12/436 (2%)

Query: 36  MNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSR 94
           MN YDS +M D+   + GYE     ++AD+++LNTC IREKA EKV+  LGR + LK+ +
Sbjct: 1   MNEYDSSKMADLLNAANGYELTEEPEEADVLLLNTCSIREKAQEKVFHQLGRWKTLKDKK 60

Query: 95  IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK-RVVDTD 153
                 +   V    A  EG+ I  R+P V+V+ GPQT +RLPE++++++     V+D  
Sbjct: 61  PGVVIGVGGCV----ATQEGDHIRERAPFVDVIFGPQTLHRLPEMIKQSQSEDAPVMDIS 116

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           +   +KF+ L        R  G TAF++I EGC K+CT+CVVPYTRG E+SR +  V+ E
Sbjct: 117 FPEIEKFDSLP-----EPRAEGATAFVSIMEGCSKYCTYCVVPYTRGEEVSRPMDDVLYE 171

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
             +L + GV E+ LLGQNVNA+RG   DGE C+F++LL  ++ I G+ R+R+TTSHP + 
Sbjct: 172 IAQLAEQGVREVNLLGQNVNAYRGPMHDGEICSFAELLRLVASIDGIDRIRFTTSHPLEF 231

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
           +D +I  + D   L+ +LHLPVQSGSDRIL  M R HT  EY+ II ++R  RPDI ISS
Sbjct: 232 TDDIIAVYEDTPELVSFLHLPVQSGSDRILTMMKRPHTGIEYKSIIRKLRKARPDIQISS 291

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLC 393
           DFIVGFPGE+D DF+ TM L+  + +  +FSF +SPR GTP ++    + E  K ERL  
Sbjct: 292 DFIVGFPGESDKDFQDTMKLIKDVDFDMSFSFIFSPRPGTPAADYPCDLSEETKKERLYE 351

Query: 394 LQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNSKNHNIGDIIK 452
           LQ+++  Q + ++   +G    VL+E   K+   +L  R+   + V        IG  + 
Sbjct: 352 LQQQINAQAMRYSRLMLGTEQRVLVEGPSKKNLMELRARTENNRVVNFEGSADLIGQFVD 411

Query: 453 VRITDVKISTLYGELV 468
           V+ITDV  ++L GE+V
Sbjct: 412 VKITDVFANSLRGEIV 427


>gi|291612929|ref|YP_003523086.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Sideroxydans
           lithotrophicus ES-1]
 gi|291583041|gb|ADE10699.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Sideroxydans
           lithotrophicus ES-1]
          Length = 446

 Score =  452 bits (1164), Expect = e-125,   Method: Composition-based stats.
 Identities = 202/447 (45%), Positives = 281/447 (62%), Gaps = 12/447 (2%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +  +K+YGCQMN YDS +M D+  + +   + +  ++AD+I+ NTC IREKA EKV+S L
Sbjct: 7   KLHIKTYGCQMNEYDSDKMVDVLRACENMVQTDKPEEADIILFNTCSIREKAEEKVFSDL 66

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE-RA 143
           GR R LK +       LL+ V GCVA  EGE I++R+P V+VV GPQT +RLP+L+  R 
Sbjct: 67  GRARVLKQA----NPRLLIGVGGCVASQEGEAIIKRAPYVDVVFGPQTLHRLPQLIAARR 122

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             GK  VD  +   +KF+ +      +      TAF++I EGC K+CTFCVVPYTRG E+
Sbjct: 123 ESGKPQVDISFPEIEKFDHVPAAQTTHG-----TAFVSIMEGCSKYCTFCVVPYTRGEEM 177

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR  + V+ E   LI  GV EITLLGQNVNA++G+  DG+   F+ LL +++ + G+ RL
Sbjct: 178 SRPYADVMREVESLIAQGVGEITLLGQNVNAYQGETDDGDTVDFAFLLQTVAALPGVQRL 237

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           RYTTSHPR+MS  LI  +     L  +LHLPVQSGSDRIL +M R +TA EY+ I+ ++R
Sbjct: 238 RYTTSHPREMSQRLIDLYATTPKLASHLHLPVQSGSDRILAAMKRGYTALEYKSIVRKLR 297

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           + RP+I+I+SDFIVGFPGETD DF ATM L+D + +  +FSF +S R GTP + M +   
Sbjct: 298 AARPEISITSDFIVGFPGETDADFEATMKLIDDVAFDASFSFIFSARPGTPAAEMADDTP 357

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVLNS 442
              K  RL  LQ ++ E     ++A  G +  V++E   ++    L GR+   + V    
Sbjct: 358 YETKLARLHRLQARIAELGQQVSEAMSGTVQRVVVENISRKSEHELAGRTANNRVVNFVG 417

Query: 443 KNHNIGDIIKVRITDVKISTLYGELVV 469
               +G  + VRI    + TL GELV+
Sbjct: 418 SPGMLGRYVDVRILSGTLHTLRGELVM 444


>gi|114566504|ref|YP_753658.1| 2-methylthioadenine synthetase [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
 gi|122318431|sp|Q0AYB7|MIAB_SYNWW RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|114337439|gb|ABI68287.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Syntrophomonas wolfei
           subsp. wolfei str. Goettingen]
          Length = 445

 Score =  452 bits (1164), Expect = e-125,   Method: Composition-based stats.
 Identities = 171/452 (37%), Positives = 266/452 (58%), Gaps = 11/452 (2%)

Query: 17  IVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA 76
           + D+   P ++ + +YGCQMNV DS  +  +    G+ +   + +ADLIV NTC +R  A
Sbjct: 1   MGDKEKKPLKYRILTYGCQMNVRDSETIAGLLEGSGFNQAEDLSEADLIVFNTCSVRHSA 60

Query: 77  AEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL 136
             KVY  LG I +LK    K+  +LL+   GC+AQ        +   V+VV G    + L
Sbjct: 61  ENKVYGKLGEIASLK----KKRPELLIAFGGCMAQLPEVRQKLKKRGVDVVFGTHNIHEL 116

Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
           P L+ RA+  +  V   +  E       +      RK G++AF+ I  GC+ FC++C+VP
Sbjct: 117 PYLIARAKEKRSPVFEVWEKEGSI----VEPLPSCRKPGLSAFVNIMFGCNNFCSYCIVP 172

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256
           YTRG E SR    ++ E  +L   G  E+TLLGQNVN+  G+GL GEK  F+DLLY  + 
Sbjct: 173 YTRGRERSRKADDIIRELEELAAAGYKEVTLLGQNVNS-YGRGL-GEKIEFADLLYRANS 230

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           + G+ R+R+TTSHP+D+SD L++A  + + L  ++H P+Q+GS+RIL+ MNR ++   Y 
Sbjct: 231 VAGIERIRFTTSHPKDVSDRLLQAIAECEKLCEHIHAPLQAGSNRILQRMNRNYSREHYL 290

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
           ++++R+R   P ++I+SD IVGFPGET++DF  T+D+V+++ +  AF+F YS R GT  +
Sbjct: 291 KLVERMRHYVPGVSITSDLIVGFPGETEEDFLETLDMVERVRFDAAFTFLYSQRSGTRAA 350

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWL 435
            + EQ+    K +RL  L ++  +     N    G I EVL+E   K   + L  R+   
Sbjct: 351 ELAEQIPLEEKKQRLERLNRRQYQIATEINQELQGSIQEVLVEGPSKTNPQKLTSRTRSN 410

Query: 436 QSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
           + V+ +     IG +I V+IT+ K  +L+GE+
Sbjct: 411 RIVIFSGGKDLIGRLINVKITEAKTFSLFGEI 442


>gi|283479139|emb|CAY75055.1| UPF0004 protein PA3980 [Erwinia pyrifoliae DSM 12163]
          Length = 461

 Score =  452 bits (1164), Expect = e-125,   Method: Composition-based stats.
 Identities = 193/436 (44%), Positives = 277/436 (63%), Gaps = 12/436 (2%)

Query: 36  MNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSR 94
           MN YDS +M D+  S  GY      +DAD+++LNTC IREKA EKV+  LGR + LK + 
Sbjct: 1   MNEYDSSKMADLLNSTHGYTLTEQAEDADVLLLNTCSIREKAQEKVFGLLGRWKKLKEA- 59

Query: 95  IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR-VVDTD 153
                D+++ V GCVA  EG +I +R+  V++V GPQT +RLPE++   R  K  VVD  
Sbjct: 60  ---NPDVIIGVGGCVASQEGAQIRQRASCVDIVFGPQTLHRLPEMINSVRGTKSPVVDVS 116

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           +   +KF+R+        R  G TAF++I EGC+K+CTFCVVPYTRG E+SR    V+ E
Sbjct: 117 FPEIEKFDRMP-----EPRANGPTAFVSIMEGCNKYCTFCVVPYTRGEEVSRPADDVLFE 171

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
             +L   GV E+ LLGQNVNA+RG   DG  C+F++LL  ++ I G+ R+R+TTSHP + 
Sbjct: 172 VAQLAAQGVREVNLLGQNVNAYRGATYDGGICSFAELLRLVATIDGIDRIRFTTSHPIEF 231

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
           +D +I+ + D   L+ +LHLPVQSG+DRIL  M R HTA EY+ II ++ + RPDI ISS
Sbjct: 232 TDDIIEVYRDTPELVSFLHLPVQSGADRILTLMKRAHTALEYKAIIRKLLAARPDIQISS 291

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLC 393
           DFI+GFPGE   DF  TM LV +I +  ++SF YS R GTP +++ + V E  K +RL  
Sbjct: 292 DFIIGFPGENQADFEQTMKLVGEINFDTSYSFIYSARPGTPAADLPDDVSEEEKKQRLYI 351

Query: 394 LQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNSKNHNIGDIIK 452
           LQ ++ +Q ++++   +G +  +L+E   ++   +L GR+   + V       +IG  + 
Sbjct: 352 LQDRISQQAMAWSRRKLGTVQRILVEGTSRKSVMELAGRTECNRVVNFEGAPEHIGKFVD 411

Query: 453 VRITDVKISTLYGELV 468
           V ITDV  ++L G L+
Sbjct: 412 VEITDVYANSLRGVLL 427


>gi|254509287|ref|ZP_05121379.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Vibrio parahaemolyticus
           16]
 gi|219547775|gb|EED24808.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Vibrio parahaemolyticus
           16]
          Length = 461

 Score =  452 bits (1164), Expect = e-125,   Method: Composition-based stats.
 Identities = 192/436 (44%), Positives = 273/436 (62%), Gaps = 12/436 (2%)

Query: 36  MNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSR 94
           MN YDS +M D+   + GYE     ++AD+++LNTC IREKA EKV+  LGR + LK+ +
Sbjct: 1   MNEYDSSKMADLMNAANGYELTEEPEEADVLLLNTCSIREKAQEKVFHQLGRWKTLKDKK 60

Query: 95  IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK-RVVDTD 153
                 +   V    A  EG+ I  R+P V+V+ GPQT +RLPE++++++  +  V+D  
Sbjct: 61  PGVVIGVGGCV----ATQEGDHIRERAPFVDVIFGPQTLHRLPEMIKQSQSDEAPVMDIS 116

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           +   +KF+RL        R  G TAF++I EGC K+CT+CVVPYTRG E+SR +  V+ E
Sbjct: 117 FPEIEKFDRLP-----EPRAEGATAFVSIMEGCSKYCTYCVVPYTRGEEVSRPMDDVLFE 171

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
             +L + GV E+ LLGQNVNA+RG   DG+ C+F++LL  ++ I G+ R+R+TTSHP + 
Sbjct: 172 IAQLAEQGVREVNLLGQNVNAYRGPMHDGDICSFAELLRLVASIDGIDRIRFTTSHPLEF 231

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
           +D +I  + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II ++R  RPDI ISS
Sbjct: 232 TDDIIAVYEDTPELVSFLHLPVQSGSDRILTMMKRPHTAIEYKSIIRKLRKARPDIQISS 291

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLC 393
           DFIVGFPGET  D + TM L+  + +  +FSF +SPR GTP ++    V E  K ERL  
Sbjct: 292 DFIVGFPGETAKDHQDTMKLIKDVDFDMSFSFIFSPRPGTPAADYPCDVPEQEKKERLYE 351

Query: 394 LQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNSKNHNIGDIIK 452
           LQ+ +  Q + ++   +G    VL+E   K+   +L  R+   + V        IG  + 
Sbjct: 352 LQQTINAQAMRYSRLMLGTEQRVLVEGPSKKNLMELRARTENNRVVNFEGSADLIGQFVD 411

Query: 453 VRITDVKISTLYGELV 468
           V+ITDV  ++L GELV
Sbjct: 412 VKITDVFANSLRGELV 427


>gi|126652507|ref|ZP_01724672.1| YmcB [Bacillus sp. B14905]
 gi|126590635|gb|EAZ84751.1| YmcB [Bacillus sp. B14905]
          Length = 514

 Score =  452 bits (1164), Expect = e-125,   Method: Composition-based stats.
 Identities = 168/448 (37%), Positives = 261/448 (58%), Gaps = 15/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + F++++YGCQMN +D+  M  +F   GY     +++AD+++LNTC IRE A  KV+  L
Sbjct: 68  RTFYIRTYGCQMNEHDTEVMAGIFMQLGYTPTEIIEEADVVLLNTCAIRENAENKVFGEL 127

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G +   K        ++L+ V GC++Q E    +ILR  P V++V G    +RLP +L+ 
Sbjct: 128 GFLLKYKRK----NPEMLIGVCGCMSQEESVVNKILRSYPHVDMVFGTHNIHRLPNILKE 183

Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           A   K +V   +S E D  E L        R   + A++ I  GCDKFCT+C+VPYTRG 
Sbjct: 184 AYMSKEMVVEVWSKEGDVIENLP-----KKRLGSIKAWVNIMYGCDKFCTYCIVPYTRGK 238

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR   +++ E R+L   G  EI LLGQNVNA  GK  +  +    DL+ +L +I  + 
Sbjct: 239 ERSRRPEEIIAEVRELAAAGYQEIMLLGQNVNA-YGKDFEDIEYRLGDLMDALRKID-IP 296

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHPRD  D LI+       L+ ++HLPVQSGS+ ILK M R++T   +  ++++
Sbjct: 297 RIRFTTSHPRDFDDQLIEVLAKRGNLVEHIHLPVQSGSNDILKIMARKYTREHFLTLVEK 356

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I++  P++ +++D IVG+P ET++ F  T+ L  ++G+  AF++ YSPR GTP + M++ 
Sbjct: 357 IKAAIPEVTLTTDIIVGYPNETEEQFEETLSLYREVGFEAAFTYIYSPREGTPAAKMVDN 416

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVL 440
           V E VK ERL  L + + E      +   G+++EVL+E   K     L G +   + V  
Sbjct: 417 VPEEVKKERLQRLNEVVGEYSRKALERLNGEVVEVLVEGTSKRRDDVLAGYTRKNRLVNF 476

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
            +    IG ++KV+I +    +L GE +
Sbjct: 477 KAPAEVIGQLVKVKIIETTSYSLTGEFL 504


>gi|269127492|ref|YP_003300862.1| RNA modification enzyme, MiaB family [Thermomonospora curvata DSM
           43183]
 gi|268312450|gb|ACY98824.1| RNA modification enzyme, MiaB family [Thermomonospora curvata DSM
           43183]
          Length = 497

 Score =  452 bits (1164), Expect = e-125,   Method: Composition-based stats.
 Identities = 165/459 (35%), Positives = 257/459 (55%), Gaps = 16/459 (3%)

Query: 14  VSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIR 73
           ++        P+ + +++YGCQMNV+DS R+  +    GY      ++ D++V NTC +R
Sbjct: 1   MNAPTTSSTAPRTYQIRTYGCQMNVHDSERLAGLLEEAGYVAAGESEEPDVVVFNTCAVR 60

Query: 74  EKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTY 133
           E A  ++Y  LG +R +K++R      + + V GC+AQ + E I+RR+P V+VV G    
Sbjct: 61  ENADNRLYGNLGHLRPVKDAR----PGMQIAVGGCLAQKDREAIVRRAPWVDVVFGTHNI 116

Query: 134 YRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC 193
             LP LLERAR  +          + F           R+    A++ I  GC+  CTFC
Sbjct: 117 GSLPALLERARIQREAQVEIKEALETFPSTLPTR----RESPYAAWVAISVGCNNTCTFC 172

Query: 194 VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS 253
           +VP  RG E  R   +++ E   L+  GV E+TLLGQNVNA+  +   G++  F+ LL +
Sbjct: 173 IVPSLRGREKDRRPGEILAEIEALVAEGVLEVTLLGQNVNAYGSEF--GDRQAFAKLLRA 230

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
             +I+GL R+R+T+ HPRD +D +I A  +   +MP LH+P+QSGSDRIL++M R +   
Sbjct: 231 CGQIEGLERVRFTSPHPRDFTDDVIAAMAETPNVMPSLHMPLQSGSDRILRAMRRSYRQE 290

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
            +  II+R+R+  P+ AI++D IVGFPGETD+DF  T+ +V +  +A AF+F+YS R GT
Sbjct: 291 RFLGIIERVRAAMPEAAITTDIIVGFPGETDEDFEQTLHVVRQARFAGAFTFQYSKRPGT 350

Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKG---KLV 429
           P + M  QV + V  ER   L     +     N   +G+ +EVL+ E  G++     ++ 
Sbjct: 351 PAAEMDGQVPKEVVQERYERLVALQEQISWEENKKQLGRTLEVLVAEGEGRKDDATRRMS 410

Query: 430 GRSPWLQSVVL--NSKNHNIGDIIKVRITDVKISTLYGE 466
           GR+P  + V      +    GD++ V +T      L  +
Sbjct: 411 GRAPDNRLVHFRPPKEPVRPGDMVTVEVTYAAPHHLVAD 449


>gi|293376437|ref|ZP_06622669.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Turicibacter sanguinis
           PC909]
 gi|325845044|ref|ZP_08168360.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Turicibacter sp. HGF1]
 gi|292644946|gb|EFF63024.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Turicibacter sanguinis
           PC909]
 gi|325488920|gb|EGC91313.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Turicibacter sp. HGF1]
          Length = 502

 Score =  452 bits (1164), Expect = e-125,   Method: Composition-based stats.
 Identities = 174/447 (38%), Positives = 268/447 (59%), Gaps = 13/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +++ +++YGCQMN +DS  +  +    GY +  + ++ADLI+LNTC IRE A  +V+  L
Sbjct: 60  KKYLIQTYGCQMNEHDSEAIIGIAEELGYTKATTQEEADLIILNTCAIRENAENRVFGEL 119

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           GR++ LK    +   DL++ V GC++Q E    +I+ +   V++V G    YRLPE +  
Sbjct: 120 GRLKRLK----RTNPDLILGVCGCMSQEEKVVNQIMEKYQYVDLVFGTHNIYRLPEYIHN 175

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           A  GK  V   +S E +     + +    R+  + A++ I  GCD+FCT+C+VPYTRG E
Sbjct: 176 ALMGKERVIEVWSQEGEI----VENMPRTRQGSIKAWVNIMYGCDEFCTYCIVPYTRGKE 231

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR    ++ E + L + G  E+TLLGQNVNA  GK     + TF DLL  L++I  L R
Sbjct: 232 RSRLPEDIIAEIKHLAEEGYQEVTLLGQNVNA-YGKDFKDREYTFGDLLDDLNKID-LPR 289

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHPRD     I+       LM ++HLPVQSG++ +LK MNR++T   Y Q++  +
Sbjct: 290 IRFTTSHPRDFDAKTIQTLAKRGNLMEHIHLPVQSGNNEVLKRMNRKYTREMYLQLVRDL 349

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           +   P ++I++D IVGFPGET++ F+ T+ LV+++GY  AF+F +SPR GTP + M + V
Sbjct: 350 KEAIPGVSITTDIIVGFPGETEEQFQDTLSLVEEVGYEGAFTFIFSPREGTPAARMEDNV 409

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVLN 441
            E  K +RL  L + +     + N    GQ+++VL+E   K ++  L G +   + V   
Sbjct: 410 SEADKKDRLNRLNEAINRGFRNGNKRFEGQVVDVLVEGTSKNDETVLAGYTRHNKLVNFK 469

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
           +    IG I+KV+IT+ K   L GE+V
Sbjct: 470 ADESTIGKIVKVKITEAKTWHLAGEMV 496


>gi|16329745|ref|NP_440473.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Synechocystis
           sp. PCC 6803]
 gi|2501538|sp|P73127|MIAB_SYNY3 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|1652230|dbj|BAA17153.1| sll0996 [Synechocystis sp. PCC 6803]
          Length = 451

 Score =  452 bits (1164), Expect = e-125,   Method: Composition-based stats.
 Identities = 174/454 (38%), Positives = 271/454 (59%), Gaps = 23/454 (5%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +R+ + ++GCQMN  DS RM  +  + G    +  + ADL++ NTC IR+ A +KVYS+L
Sbjct: 6   RRYHIITFGCQMNKADSERMAGILENLGMTYTDDPNQADLVLYNTCSIRDNAEQKVYSYL 65

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR    K        +L +VVAGCVAQ EGE++LRR P +++V+GPQ   RL +LLE+  
Sbjct: 66  GRQAKRKQ----VEPELTLVVAGCVAQQEGEQLLRRVPELDLVMGPQHANRLDQLLEQVW 121

Query: 145 FGKRVVDTD--YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            G +VV T+  + +ED  +          R+  V+A++ I  GC++ C++CVVP  RG+E
Sbjct: 122 AGSQVVATESLHIMEDITKP--------RRESTVSAWVNIIYGCNERCSYCVVPNVRGVE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC------TFSDLLYSLSE 256
            SR+   +  E   L   G  E+TLLGQN++A  G+ L G         T +DLLY + +
Sbjct: 174 QSRTPEAIYGEMEVLAQQGFKEVTLLGQNIDA-YGRDLPGTTPSGRHLHTLTDLLYHVHD 232

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           I+G+ RLR+ TSHPR  ++ LI+A  +L  +  + H+P QSG + ILK+M R +T  +Y 
Sbjct: 233 IEGIDRLRFATSHPRYFTERLIQACQELPKVCEHFHIPFQSGDNDILKAMKRGYTREKYL 292

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
           QII++IR   PD AIS+D IVGFPGET+  F  T++L++++G+    +  YSPR GTP +
Sbjct: 293 QIIEKIRRYMPDAAISADVIVGFPGETEAQFENTLNLIEEVGFDLLNTAAYSPRPGTPAA 352

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWL 435
               Q+ E VK +RL  L   +  Q +  +   +G++ EVL+E    K  G+++GR+   
Sbjct: 353 FWDNQLSEEVKGDRLQRLNHLVSTQAMERSQRYLGRVEEVLVEGENLKSPGQVMGRTRGN 412

Query: 436 QSVVLNSK-NHNIGDIIKVRITDVKISTLYGELV 468
           +      + +  +G  + V+IT+ +  +L GE +
Sbjct: 413 RLTFFQGEISELLGKTVPVKITEARAFSLTGEAL 446


>gi|160872066|ref|ZP_02062198.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Rickettsiella grylli]
 gi|159120865|gb|EDP46203.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Rickettsiella grylli]
          Length = 443

 Score =  452 bits (1163), Expect = e-125,   Method: Composition-based stats.
 Identities = 193/445 (43%), Positives = 281/445 (63%), Gaps = 12/445 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ +++++GCQMNVYDS  + ++   S G    ++ ++AD+IVLNTC IREKA EKV+S 
Sbjct: 4   KKIYIETHGCQMNVYDSDSLYNLLHHSHGLCLTSNPNEADVIVLNTCSIREKAQEKVFSQ 63

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LG+ R +K+       D+++ + GCVA  EG  I+ R+P V++V GPQT +RLP+++   
Sbjct: 64  LGQWRKIKS----LRRDIIIAIGGCVASQEGSAIISRAPFVDIVFGPQTLHRLPDMINDV 119

Query: 144 RFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
              K+ +VD  +   +KF+ L        R  G  A ++I EGC+K+C+FCVVPYTRG E
Sbjct: 120 LEKKQPIVDISFPEIEKFDNLP-----EPRAEGPRALVSIMEGCNKYCSFCVVPYTRGEE 174

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           ISR L  V+ E   L   GV EITLLGQNVN ++G   +G     +DL+  ++ I  ++R
Sbjct: 175 ISRPLDDVLAEVVHLSQQGVREITLLGQNVNDYQGPRFEGGTADLADLIRYIAAIDDILR 234

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP   SD LI+A+ D+  L  +LHLPVQSGSD+IL +M R +T  E++  + ++
Sbjct: 235 IRFTTSHPLAFSDRLIQAYADIPKLANHLHLPVQSGSDKILAAMKRGYTVLEFKSKLRQL 294

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R VRP IA SSDFIVGFPGET+ DFRAT+ LV+ IG+  +FSF YS R GTP + + + V
Sbjct: 295 RQVRPTIAFSSDFIVGFPGETEADFRATLQLVESIGFDHSFSFIYSRRPGTPAAELPDSV 354

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRSPWLQSVVLN 441
               K +RL  LQ  L  Q  + +    G I  +L+E   K+ K +L GR+   + V   
Sbjct: 355 SLATKKQRLQILQNLLVFQGQTLSKKMCGTIQPILVEGPSKKNKEELQGRTENNRVVNFK 414

Query: 442 SKNHNIGDIIKVRITDVKISTLYGE 466
              H IG ++ + IT+V  ++L GE
Sbjct: 415 GPLHWIGQLVPITITEVLRNSLRGE 439


>gi|304320422|ref|YP_003854065.1| hypothetical protein PB2503_04242 [Parvularcula bermudensis
           HTCC2503]
 gi|303299324|gb|ADM08923.1| hypothetical protein PB2503_04242 [Parvularcula bermudensis
           HTCC2503]
          Length = 431

 Score =  452 bits (1163), Expect = e-125,   Method: Composition-based stats.
 Identities = 231/434 (53%), Positives = 290/434 (66%), Gaps = 14/434 (3%)

Query: 36  MNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRI 95
           MNVYDS RM  +    GY    + D+ADL++LNTCHIREKAAEKVYS LGR+  +K    
Sbjct: 1   MNVYDSERMTGLLRPLGYSPTANPDEADLVILNTCHIREKAAEKVYSELGRLTEVKARGG 60

Query: 96  KEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER-ARFGKRVVDTDY 154
           K      + VAGCVAQAEG+EI  R+P V++V GPQ+Y+ LPEL+ + AR     ++TD+
Sbjct: 61  K------IAVAGCVAQAEGKEIKARAPQVDLVFGPQSYHHLPELIAKSAREAGLALETDF 114

Query: 155 SVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEA 214
           +  +KF+ L+       +  G  AF+TIQEGCDKFCTFCVVPYTRG E+SR    +  E 
Sbjct: 115 AAVEKFDALA----EGRQADGYAAFVTIQEGCDKFCTFCVVPYTRGAEVSRGTDAIAAEV 170

Query: 215 RKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT---FSDLLYSLSEIKGLVRLRYTTSHPR 271
           R L   GV EITLLGQNVNAWRG    G          L   L++I G+ R+R+TTSHP 
Sbjct: 171 RDLAAQGVVEITLLGQNVNAWRGAAPAGATQDSLGLGGLCRHLAQIDGIERIRFTTSHPA 230

Query: 272 DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAI 331
           DM D LI A  D   LMPYLHLPVQSG+DRILK+MNRRHTA  Y ++I+RIR  RPDIAI
Sbjct: 231 DMDDELIAAFADEPKLMPYLHLPVQSGADRILKAMNRRHTADTYIRMIERIRQARPDIAI 290

Query: 332 SSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERL 391
           S D IVGFPGE +  F  T+ LV+ + YA  FSFKYS R GTPG+ + +QV E++KAERL
Sbjct: 291 SGDMIVGFPGEDEGAFEETLALVEAVEYASCFSFKYSRRPGTPGATLPKQVAEDIKAERL 350

Query: 392 LCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDII 451
             LQ  L  Q+  FN   VG+I+ VL EK G+E G+LVGRSP+LQ+V     +H +G I+
Sbjct: 351 QRLQALLERQKQHFNAQQVGKILPVLFEKPGREAGQLVGRSPYLQAVFAPLPDHALGQIV 410

Query: 452 KVRITDVKISTLYG 465
            VRI   + ++L  
Sbjct: 411 PVRILSTRPNSLEA 424


>gi|291448226|ref|ZP_06587616.1| RNA modification enzyme [Streptomyces roseosporus NRRL 15998]
 gi|291351173|gb|EFE78077.1| RNA modification enzyme [Streptomyces roseosporus NRRL 15998]
          Length = 506

 Score =  452 bits (1163), Expect = e-125,   Method: Composition-based stats.
 Identities = 176/453 (38%), Positives = 259/453 (57%), Gaps = 20/453 (4%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDD--ADLIVLNTCHIREKAAEKV 80
           V + + V++YGCQMNV+DS R+  +    GY R     D  AD++V NTC +RE A  K+
Sbjct: 12  VQKSYEVRTYGCQMNVHDSERLSGLLEGAGYVRAPEGSDGDADVVVFNTCAVRENADNKL 71

Query: 81  YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140
           Y  LGR+  +K  R      + + V GC+AQ + + I++R+P V+VV G     +LP LL
Sbjct: 72  YGNLGRLAPMKTKR----PGMQIAVGGCLAQKDRDTIVKRAPWVDVVFGTHNIGKLPVLL 127

Query: 141 ERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           ERAR  +   ++   S+E     L        R+    A+++I  GC+  CTFC+VP  R
Sbjct: 128 ERARIQEEAQIEIAESLEAFPSTLPT-----RRESAYAAWVSISVGCNNTCTFCIVPALR 182

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G E  R    ++ E   L+  GV EITLLGQNVNA  G  + G++  FS LL +  +I+G
Sbjct: 183 GKEKDRRTGDILAEIEALVAEGVSEITLLGQNVNA-YGSDI-GDREAFSKLLRACGKIEG 240

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           L R+R+T+ HPRD +D +I A  +   +MP LH+P+QSGSD ILK+M R +    +  II
Sbjct: 241 LERVRFTSPHPRDFTDDVIAAMAETPNVMPQLHMPMQSGSDSILKAMRRSYRQERFLGII 300

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
           +++R+  PD AIS+D IVGFPGET++DF  TM  V +  +A AF+F+YS R GTP ++M 
Sbjct: 301 EKVRAAMPDAAISTDIIVGFPGETEEDFEQTMHAVREARFANAFTFQYSKRPGTPAADMD 360

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKG---KLVGRSPWL 435
            Q+ + V  ER + L     +     N   VG+ ++V++ E  G++ G   +L GR+P  
Sbjct: 361 GQIPKEVVQERYMRLSALQEQISWDENKKQVGRTLDVMVAEGEGRKDGATQRLSGRAPDN 420

Query: 436 QSVVLNSKN--HNIGDIIKVRITDVKISTLYGE 466
           + V           GD++ V IT      L  E
Sbjct: 421 RLVHFTQPEQAVRPGDVVTVEITYAAPHHLLAE 453


>gi|172040556|ref|YP_001800270.1| hypothetical protein cur_0876 [Corynebacterium urealyticum DSM
           7109]
 gi|229890501|sp|B1VDD8|MIAB_CORU7 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|171851860|emb|CAQ04836.1| unnamed protein product [Corynebacterium urealyticum DSM 7109]
          Length = 540

 Score =  452 bits (1163), Expect = e-125,   Method: Composition-based stats.
 Identities = 164/473 (34%), Positives = 270/473 (57%), Gaps = 22/473 (4%)

Query: 8   IGVAHMVSQIVDQCIVP-----QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDA 62
           +G AH+   +  +  V      + + V+++GCQMNV+DS R+  +    GY+   + ++ 
Sbjct: 19  VGSAHVTHAMKKKTSVSEQPEQRTYEVRTFGCQMNVHDSERLSGLLEDSGYQPAANGEEP 78

Query: 63  DLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSP 122
           D++V NTC +RE A  ++Y  L  ++ +K+        + + V GC+AQ + + ++ R+P
Sbjct: 79  DVLVFNTCAVRENADNRLYGTLAMVKPMKDR----NPGMQIAVGGCMAQKDKDAVVDRAP 134

Query: 123 IVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTI 182
            V+VV G      LP LLER+   +R         ++F  +        R+   + ++++
Sbjct: 135 WVDVVFGTHNIGSLPTLLERSAHNQRAEVEILDSLEEFPSVLPA----KRESAYSGWVSV 190

Query: 183 QEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR----GK 238
             GC+  CTFC+VP  RG E  R   +++ E + L+D GV E+TLLGQNVNA+      +
Sbjct: 191 SVGCNNTCTFCIVPSLRGKEQDRRPGEILAEVQALVDQGVQEVTLLGQNVNAYGVNFADE 250

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
            L  ++  F+ LL +  EI+GL RLR+T+ HP + +D +I A  +   + P LH+P+QSG
Sbjct: 251 DLPRDRGAFAKLLRACGEIEGLERLRFTSPHPAEFTDDVIDAMAETPNVCPQLHMPLQSG 310

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           SDRILK M R + + ++  I+D++R   P  AI++D IVGFPGET++DF+AT+D+V+K  
Sbjct: 311 SDRILKEMRRSYRSKKFLGILDKVRERIPHAAITTDIIVGFPGETEEDFQATLDVVEKAR 370

Query: 359 YAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI 418
           ++ AF+F+YSPR GTP + M +Q+ + V  ER   L       Q   N   VG   E+L+
Sbjct: 371 FSCAFTFQYSPRPGTPAATMPDQIPKAVVQERYERLIALQERIQAEDNKELVGTTQELLV 430

Query: 419 EKHGKEKG----KLVGRSPWLQSVVL-NSKNHNIGDIIKVRITDVKISTLYGE 466
           ++ G  K     ++ GR+   + V    S++   GDI++V ITD +   L  +
Sbjct: 431 QETGGRKDAQRHRMSGRARDGRLVHFTPSEDVRPGDIVEVTITDARPFFLIAD 483


>gi|315225572|ref|ZP_07867382.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Capnocytophaga ochracea
           F0287]
 gi|314944516|gb|EFS96555.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Capnocytophaga ochracea
           F0287]
          Length = 482

 Score =  452 bits (1163), Expect = e-125,   Method: Composition-based stats.
 Identities = 166/457 (36%), Positives = 254/457 (55%), Gaps = 22/457 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ +++SYGCQMN  DS  +  +    GY   +++DDADL+++NTC +REKA + +   L
Sbjct: 24  KKLYIESYGCQMNFSDSEIVASILSKAGYNTTDTVDDADLVLINTCSVREKAEQTIRKRL 83

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            +    K         + V V GC+A+      L    IV++VVGP  Y  LP LLE   
Sbjct: 84  EQFNVYKRK----KPAMKVGVLGCMAERVKHAFLEEEKIVDMVVGPDAYKDLPNLLEEVE 139

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G+  V+   S ++ +  ++ +        GVTAF++I  GCD  CTFC+VP+TRG E S
Sbjct: 140 EGREAVNVILSKDETYADIAPIRLN---SNGVTAFVSITRGCDNMCTFCIVPFTRGRERS 196

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK-------------CTFSDLL 251
           R    +++E   L   G  E+TLLGQNV+++   G   +K               F+ LL
Sbjct: 197 RDPYSILNEIADLQARGFKEVTLLGQNVDSYLWYGGGLKKDFSKASEMQQATAINFAKLL 256

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
             ++  +  +R+R++TS+P+DM+  +I        +  Y+HLPVQSGS+RILK+MNR HT
Sbjct: 257 DMVATAQPEMRIRFSTSNPQDMTLDVIDTMAKHPNICKYIHLPVQSGSNRILKAMNRLHT 316

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
             EY  +ID IR   P+ AIS D I GFP ET+DD + T+ L++ + Y   F F YS R 
Sbjct: 317 REEYFALIDSIRERIPECAISQDMIAGFPTETEDDHQDTLSLMEYVKYDFGFMFAYSERP 376

Query: 372 GTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLV 429
           GT  +  + + V E VK  RL  +    ++  +    A +G+ +EVLIE + K+   + +
Sbjct: 377 GTLAARKIEDDVPEEVKKRRLAEIIDLQQKHSLYRTQAQIGKTVEVLIEGNSKKSDKEWM 436

Query: 430 GRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGE 466
           GR+     VV   +++ IGD + V+ITD   +TL G+
Sbjct: 437 GRNSQNTVVVFPKEDYKIGDFVMVKITDCTSTTLIGK 473


>gi|150003734|ref|YP_001298478.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacteroides
           vulgatus ATCC 8482]
 gi|294777449|ref|ZP_06742900.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacteroides vulgatus
           PC510]
 gi|229890425|sp|A6KZJ2|MIAB_BACV8 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|149932158|gb|ABR38856.1| conserved hypothetical protein [Bacteroides vulgatus ATCC 8482]
 gi|294448517|gb|EFG17066.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacteroides vulgatus
           PC510]
          Length = 456

 Score =  452 bits (1162), Expect = e-125,   Method: Composition-based stats.
 Identities = 163/446 (36%), Positives = 260/446 (58%), Gaps = 10/446 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F+++YGCQMNV DS  +  +    GY    ++D+AD + +NTC IR+ A +K+ + L
Sbjct: 18  KKLFIETYGCQMNVADSEVIASIMQMAGYHVCETLDEADAVFMNTCSIRDNAEQKILNRL 77

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
               ++K ++ +   +L+V V GC+A+   ++++     V++VVGP  Y  LP+L+    
Sbjct: 78  EFFHSMKKNKRR---NLIVGVLGCMAERVKDDLIENH-HVDLVVGPDAYLTLPDLVASVE 133

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G++ ++ + S  + +  +       N   G   F++I  GC+ FC +C+VPYTRG E S
Sbjct: 134 AGEKAINVELSTTETYREVIPSRICGNHISG---FVSIMRGCNNFCHYCIVPYTRGRERS 190

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R +  +++E R L D G  E+TLLGQNVN++R +  +GE  TF  LL +++E    +R+R
Sbjct: 191 RDVESILNEVRDLADKGYKEVTLLGQNVNSYRFE-KEGEIITFPMLLRTVAEAVPDMRVR 249

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +TTSHP+DMSD  ++   +   +  ++HLPVQSGS RILK MNR++T   Y + +  IR 
Sbjct: 250 FTTSHPKDMSDETLQVIAETPNVCKHIHLPVQSGSSRILKLMNRKYTREWYLERVAAIRR 309

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN-MLEQVD 383
           + PD  +S+D   G+  ET++D + ++ L+ +  Y  AF FKYS R GT  S  + + V 
Sbjct: 310 IIPDCGLSTDIFSGYHSETEEDHQESLSLMRECAYDSAFMFKYSERPGTYASKHLPDDVP 369

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNS 442
           E VK  RL  + +         N   VG+  EV++E   K    +L GR+   + VV + 
Sbjct: 370 EEVKIRRLNEIIELQNRLSAESNARDVGKTFEVMVEGVSKRSREQLFGRTQQNKVVVFDR 429

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
            NH IGD + VRIT+   +TL GE V
Sbjct: 430 GNHRIGDFVHVRITEASSATLKGEEV 455


>gi|260172734|ref|ZP_05759146.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacteroides
           sp. D2]
 gi|315921024|ref|ZP_07917264.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313694899|gb|EFS31734.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 460

 Score =  452 bits (1162), Expect = e-125,   Method: Composition-based stats.
 Identities = 162/447 (36%), Positives = 256/447 (57%), Gaps = 10/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F+++YGCQMNV DS  +  +    GY    ++++AD + +NTC IR+ A +K+ + L
Sbjct: 20  KKLFIETYGCQMNVADSEVIASVMQMAGYSVAETLEEADAVFMNTCSIRDNAEQKILNRL 79

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
               +L     K+   L+V V GC+A+   ++++     V++VVGP  Y  LP+L+    
Sbjct: 80  EFFHSL----KKKKKHLIVGVLGCMAERVKDDLITNH-HVDLVVGPDAYLTLPDLIAAVE 134

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G++ ++ + S  + +  +       N   G   F++I  GC+ FCT+C+VPYTRG E S
Sbjct: 135 TGEKAINVELSTTETYRDVIPSRICGNHISG---FVSIMRGCNNFCTYCIVPYTRGRERS 191

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R +  +++E   L+  G  E+TLLGQNVN++R +   GE  TF  LL +++E    VR+R
Sbjct: 192 RDVESILNEVADLVAKGYKEVTLLGQNVNSYRFERPTGEVVTFPMLLRTVAEAAPGVRIR 251

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +TTSHP+DMSD  ++    +  +  ++HLPVQSGS RILK MNR++T   Y   +  I+ 
Sbjct: 252 FTTSHPKDMSDETLEVIAQVPNVCKHIHLPVQSGSSRILKLMNRKYTREWYLDRVAAIKR 311

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN-MLEQVD 383
           + PD  +++D   GF  ET++D   ++ L+++ GY  AF FKYS R GT  S  + + V 
Sbjct: 312 IIPDCGLTTDIFSGFHSETEEDHALSLSLMEECGYDAAFMFKYSERPGTYASKHLEDNVS 371

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNS 442
           E VK  RL  +           N  C+G+  EVL+E   K    +L GR+   + VV + 
Sbjct: 372 EEVKVRRLNEIIALQNRLSAESNQRCIGKTYEVLVEGVSKRSRDQLFGRTEQNRVVVFDR 431

Query: 443 KNHNIGDIIKVRITDVKISTLYGELVV 469
             H +GD + VR+T+   +TL GE VV
Sbjct: 432 GTHRVGDFVNVRVTEASSATLKGEEVV 458


>gi|212636644|ref|YP_002313169.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Shewanella
           piezotolerans WP3]
 gi|212558128|gb|ACJ30582.1| tRNA-i(6)A37 modification enzyme MiaB [Shewanella piezotolerans
           WP3]
          Length = 462

 Score =  452 bits (1162), Expect = e-125,   Method: Composition-based stats.
 Identities = 193/436 (44%), Positives = 275/436 (63%), Gaps = 12/436 (2%)

Query: 36  MNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSR 94
           MN YDS +M D+    +GYE  +  ++AD+++LNTC IREKA EKV+  LGR + LK+  
Sbjct: 1   MNEYDSSKMADLLDEYEGYELTDEAEEADVLLLNTCSIREKAQEKVFHQLGRWKTLKDK- 59

Query: 95  IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR-VVDTD 153
                 L++ V GCVA  EG+ I  R+  V+++ GPQT +RLPE+L++ + GK+ V+D  
Sbjct: 60  ---KPGLIIGVGGCVASQEGKAIKERAQCVDLIFGPQTLHRLPEMLDQIKDGKKAVIDVS 116

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           +   +KF+RL        R  G +A+++I EGC K+C+FCVVPYTRG E+SR L  ++ E
Sbjct: 117 FPEIEKFDRLP-----EPRADGPSAYVSIMEGCSKYCSFCVVPYTRGEEVSRPLDDIILE 171

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
             +L D GV E+ LLGQNVNA+RG   D E CTF++LL  ++ I G+ RLR+TTSHP + 
Sbjct: 172 IAQLADQGVREVNLLGQNVNAYRGATHDDEICTFAELLRYVAAIDGIDRLRFTTSHPIEF 231

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
           +  +I  + D   L+ +LHLPVQSGSD IL  M R H A EY+ II R+R  RPDI ISS
Sbjct: 232 TQDIIDVYEDTPELVSFLHLPVQSGSDLILTQMKRGHMAIEYKSIIRRLRKARPDIQISS 291

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLC 393
           DFI+GFPGE+  DF  TM L++ + +  +FSF YS R GTP +++ + V    K ERL  
Sbjct: 292 DFIIGFPGESKQDFADTMKLIEDVQFDHSFSFIYSARPGTPAADLPDDVTLEEKKERLAI 351

Query: 394 LQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLNSKNHNIGDIIK 452
           LQ ++ +Q + ++   VG +  +L+E    K   +L GR+   + V    K  +IG  + 
Sbjct: 352 LQDRITQQAMRYSRHMVGTVQRILVEGPSVKNPMELRGRTENSRVVNFEGKPEHIGGFVD 411

Query: 453 VRITDVKISTLYGELV 468
           V I DV  ++L G  V
Sbjct: 412 VEIVDVYTNSLRGVFV 427


>gi|237709181|ref|ZP_04539662.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|237724341|ref|ZP_04554822.1| SAM/TRAM family methylase [Bacteroides sp. D4]
 gi|265752708|ref|ZP_06088277.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacteroides sp.
           3_1_33FAA]
 gi|229437210|gb|EEO47287.1| SAM/TRAM family methylase [Bacteroides dorei 5_1_36/D4]
 gi|229456877|gb|EEO62598.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|263235894|gb|EEZ21389.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacteroides sp.
           3_1_33FAA]
          Length = 456

 Score =  452 bits (1162), Expect = e-125,   Method: Composition-based stats.
 Identities = 162/446 (36%), Positives = 259/446 (58%), Gaps = 10/446 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F+++YGCQMNV DS  +  +    GY    ++D+AD + +NTC IR+ A +K+ + L
Sbjct: 18  KKLFIETYGCQMNVADSEVIASIMQMAGYHVCETLDEADAVFMNTCSIRDNAEQKILNRL 77

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
               ++K ++ +   +L+V V GC+A+   ++++     V++VVGP  Y  LP+L+    
Sbjct: 78  EFFHSMKKNKRR---NLIVGVLGCMAERVKDDLIENH-HVDLVVGPDAYLTLPDLVASVE 133

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G++ ++ + S  + +  +       N   G   F++I  GC+ FC +C+VPYTRG E S
Sbjct: 134 AGEKAINVELSTTETYREVIPSRICGNHISG---FVSIMRGCNNFCHYCIVPYTRGRERS 190

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R +  +++E R L   G  E+TLLGQNVN++R +  +GE  TF  LL +++E    +R+R
Sbjct: 191 RDVESILNEVRDLAAKGYKEVTLLGQNVNSYRFE-KEGEIITFPMLLRTVAEAVPDMRVR 249

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +TTSHP+DMSD  ++   +   +  ++HLPVQSGS RILK MNR++T   Y + +  IR 
Sbjct: 250 FTTSHPKDMSDETLQVIAETPNVCKHIHLPVQSGSSRILKLMNRKYTREWYLERVAAIRR 309

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN-MLEQVD 383
           + PD  +S+D   G+  ET++D + ++ L+ +  Y  AF FKYS R GT  S  + + V 
Sbjct: 310 IIPDCGLSTDIFSGYHSETEEDHQESLSLMRECAYDSAFMFKYSERPGTYASKHLPDDVP 369

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNS 442
           E VK  RL  + +         N   VG+  EV++E   K    +L GR+   + VV + 
Sbjct: 370 EEVKIRRLNEIIELQNRLSAESNARDVGKTFEVMVEGVSKRSREQLFGRTQQNKVVVFDR 429

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
            NH IGD + VRIT+   +TL GE V
Sbjct: 430 GNHRIGDFVHVRITEASSATLKGEEV 455


>gi|117928695|ref|YP_873246.1| RNA modification protein [Acidothermus cellulolyticus 11B]
 gi|229890412|sp|A0LV00|MIAB_ACIC1 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|117649158|gb|ABK53260.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Acidothermus
           cellulolyticus 11B]
          Length = 497

 Score =  452 bits (1162), Expect = e-125,   Method: Composition-based stats.
 Identities = 173/464 (37%), Positives = 264/464 (56%), Gaps = 17/464 (3%)

Query: 10  VAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNT 69
           V        D+   P+ + V+++GCQMN++DS R+  +  + GY R    + AD++V NT
Sbjct: 14  VLPAAGPAPDR---PRTYQVRTFGCQMNMHDSERIAGLLEAAGYVRAADDEPADVVVFNT 70

Query: 70  CHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG 129
           C +RE A  ++Y  LG +  +K    K   D+ + V GC+AQ +  +I+RR+P V+VV G
Sbjct: 71  CAVRENADNRLYGNLGLLLPVK----KAKPDMQIAVGGCLAQKDKGDIVRRAPWVDVVFG 126

Query: 130 PQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKF 189
                 LP LLERAR  +          + F           R+    A++ I  GC+  
Sbjct: 127 THNIEALPVLLERARIAREAQVEIREALEVF----PSTLPSRRESVYAAWVAISVGCNNT 182

Query: 190 CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSD 249
           CTFC+VP  RG E  R    ++ E + L+ +GV E+TLLGQNVN+  G    G++  F+ 
Sbjct: 183 CTFCIVPSLRGRERDRRPGDILREIQTLVADGVLEVTLLGQNVNS-YGVDF-GDRQAFAK 240

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
           LL +   I GL R+R+T+ HPRD +D +I A  +   +MP LH+P+QSGSD +L+ M R 
Sbjct: 241 LLRACGTIDGLERVRFTSPHPRDFTDDVIAAMAETPNVMPQLHMPLQSGSDAVLRRMRRS 300

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369
           +   +Y  II R+RS  PD AI++D IVGFPGET+DDF  T+D+V K  +A AF+F+YS 
Sbjct: 301 YRKEKYLDIISRVRSAIPDAAITTDIIVGFPGETEDDFAETLDVVRKARFAGAFTFQYSK 360

Query: 370 RLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKG-- 426
           R GTP + M +QV  +V A+R   L   + +  +  N A VG+++EVL+ E  G++    
Sbjct: 361 RPGTPAAEMPDQVPPDVVADRFARLVALVEQIALEENQAQVGRVVEVLVAEGEGRKDAET 420

Query: 427 -KLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
            ++ GR+P  + V   + +   GD++ V +T      L  + V+
Sbjct: 421 HRMSGRAPDNRLVHFRATDARPGDVVTVAVTQAAPHCLIADQVL 464


>gi|134299740|ref|YP_001113236.1| (dimethylallyl)adenosine tRNA methylthiotransferase
           [Desulfotomaculum reducens MI-1]
 gi|229890514|sp|A4J5Q8|MIAB_DESRM RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|134052440|gb|ABO50411.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Desulfotomaculum reducens
           MI-1]
          Length = 456

 Score =  452 bits (1162), Expect = e-125,   Method: Composition-based stats.
 Identities = 167/458 (36%), Positives = 264/458 (57%), Gaps = 14/458 (3%)

Query: 14  VSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIR 73
             ++ +     + + ++S+GCQMN  D+  +  M    GY   ++ ++AD+I+LNTC +R
Sbjct: 6   QDKMTNAMNNSKLYLIQSFGCQMNERDAESLAGMLEDLGYCPTSAQEEADIILLNTCCVR 65

Query: 74  EKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAE--GEEILRRSPIVNVVVGPQ 131
           E A  KV+  LGR+R LK +      DL++ V GC++Q E   + I R  P V+++ G  
Sbjct: 66  ETAESKVFGLLGRLRKLKVA----KPDLILGVCGCMSQQEDAAKRIRRSFPFVDLIFGTH 121

Query: 132 TYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCT 191
             + LP ++ + +     V   ++ E        V     RK  + A++TI  GC+ FCT
Sbjct: 122 NIHELPRMIHQVQENHEAVLEVWATEKGITESIPV----KRKDKLKAWVTIMYGCNNFCT 177

Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLL 251
           +C+VPY RG E SR    ++DE ++L+  G  E+TLLGQNVN+  GK        F+DLL
Sbjct: 178 YCIVPYVRGRERSRQPEDIIDEIKELVQEGYKEVTLLGQNVNS-YGKDFK-NNYRFADLL 235

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
            ++ +I GL R+R+ TSHPRD    LI+       +  + HLP Q+GS+R+LK MNR +T
Sbjct: 236 MAIDDITGLERVRFMTSHPRDFDQRLIEVVASAKKVCEHYHLPAQAGSNRVLKMMNRGYT 295

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
              Y ++I +I+   P+ +I++D +VGFPGET++DF+ T+DLV ++ Y  AF+F Y+ R 
Sbjct: 296 REHYLELIRKIKERVPNASITADLMVGFPGETEEDFQETLDLVKQVRYDSAFTFVYNIRS 355

Query: 372 GTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVG 430
           GTP + + EQV E VK+ER+  L +      +  N    G+++EVL+E   K     L G
Sbjct: 356 GTPAAKL-EQVSEEVKSERIQRLIELQNLISLENNQREEGRVLEVLVEGETKTNPDLLAG 414

Query: 431 RSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           R+   + VV     H  G ++++RIT  + + L GE+V
Sbjct: 415 RTRTNKLVVFQGSGHLPGQLVQIRITKGRPNLLEGEVV 452


>gi|239944763|ref|ZP_04696700.1| hypothetical protein SrosN15_27475 [Streptomyces roseosporus NRRL
           15998]
 gi|239991228|ref|ZP_04711892.1| hypothetical protein SrosN1_28246 [Streptomyces roseosporus NRRL
           11379]
          Length = 497

 Score =  452 bits (1162), Expect = e-125,   Method: Composition-based stats.
 Identities = 176/453 (38%), Positives = 259/453 (57%), Gaps = 20/453 (4%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDD--ADLIVLNTCHIREKAAEKV 80
           V + + V++YGCQMNV+DS R+  +    GY R     D  AD++V NTC +RE A  K+
Sbjct: 3   VQKSYEVRTYGCQMNVHDSERLSGLLEGAGYVRAPEGSDGDADVVVFNTCAVRENADNKL 62

Query: 81  YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140
           Y  LGR+  +K  R      + + V GC+AQ + + I++R+P V+VV G     +LP LL
Sbjct: 63  YGNLGRLAPMKTKR----PGMQIAVGGCLAQKDRDTIVKRAPWVDVVFGTHNIGKLPVLL 118

Query: 141 ERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           ERAR  +   ++   S+E     L        R+    A+++I  GC+  CTFC+VP  R
Sbjct: 119 ERARIQEEAQIEIAESLEAFPSTLPT-----RRESAYAAWVSISVGCNNTCTFCIVPALR 173

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G E  R    ++ E   L+  GV EITLLGQNVNA  G  + G++  FS LL +  +I+G
Sbjct: 174 GKEKDRRTGDILAEIEALVAEGVSEITLLGQNVNA-YGSDI-GDREAFSKLLRACGKIEG 231

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           L R+R+T+ HPRD +D +I A  +   +MP LH+P+QSGSD ILK+M R +    +  II
Sbjct: 232 LERVRFTSPHPRDFTDDVIAAMAETPNVMPQLHMPMQSGSDSILKAMRRSYRQERFLGII 291

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
           +++R+  PD AIS+D IVGFPGET++DF  TM  V +  +A AF+F+YS R GTP ++M 
Sbjct: 292 EKVRAAMPDAAISTDIIVGFPGETEEDFEQTMHAVREARFANAFTFQYSKRPGTPAADMD 351

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKG---KLVGRSPWL 435
            Q+ + V  ER + L     +     N   VG+ ++V++ E  G++ G   +L GR+P  
Sbjct: 352 GQIPKEVVQERYMRLSALQEQISWDENKKQVGRTLDVMVAEGEGRKDGATQRLSGRAPDN 411

Query: 436 QSVVLNSKN--HNIGDIIKVRITDVKISTLYGE 466
           + V           GD++ V IT      L  E
Sbjct: 412 RLVHFTQPEQAVRPGDVVTVEITYAAPHHLLAE 444


>gi|304404333|ref|ZP_07385995.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Paenibacillus
           curdlanolyticus YK9]
 gi|304347311|gb|EFM13143.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Paenibacillus
           curdlanolyticus YK9]
          Length = 530

 Score =  451 bits (1161), Expect = e-125,   Method: Composition-based stats.
 Identities = 171/461 (37%), Positives = 267/461 (57%), Gaps = 14/461 (3%)

Query: 11  AHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC 70
              +   +      + + V ++GCQMN +DS  M+ +    GY        AD+I+LNTC
Sbjct: 73  EEAIPDALRTLGAGKHYMVYTFGCQMNEHDSEVMKGLLEQMGYTPTEDRKLADVILLNTC 132

Query: 71  HIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVV 128
            IRE A +KV+  LG ++ LK    +E  +LL+ V GC++Q E     IL   P V++V 
Sbjct: 133 AIRENAEDKVFGELGHLKGLK----RERPNLLLGVCGCMSQEESVVGRILATHPFVDLVF 188

Query: 129 GPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
           G    +RLP LL+ A F + +V   +S E       I++    ++ G+ A++ I  GCDK
Sbjct: 189 GTHNIHRLPYLLQSAYFNQEMVVEVWSKEG-----DIIENLPKKREGMRAWVNIMYGCDK 243

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS 248
           FCT+C+VPYTRG E SR  + ++ E R+L   G  E+TLLGQNVNA  GK    +   F+
Sbjct: 244 FCTYCIVPYTRGKERSRLPADIIAEVRELARQGYKEVTLLGQNVNA-YGKDFTDDNYRFA 302

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
           DL+  +S+I  + R+R+ TSHPRD  D LI+       L+ ++HLPVQSGS  ILK M+R
Sbjct: 303 DLMADISQI-AIPRIRFMTSHPRDFDDHLIEVLAQGGNLVEHIHLPVQSGSSAILKRMSR 361

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
           +++  ++  + +RI+   P++ +++D IVGFPGE+++ F  T+ LV ++G+  A++F YS
Sbjct: 362 KYSREQFLSLANRIKQAIPNVVLTTDIIVGFPGESEEQFEETLTLVREVGFDLAYTFIYS 421

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GK 427
           PR GTP ++M + V    K +RL  L + + EQ    ++  VGQ++EVL+E   K     
Sbjct: 422 PREGTPAADMEDDVPMETKKKRLSRLNELMAEQGRIGHEKLVGQVVEVLVEGESKNNANV 481

Query: 428 LVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           L GR+   + V        IG +I+VR+T+ +   +  E +
Sbjct: 482 LAGRTRTNKLVHFEGPKEWIGQLIQVRVTEAQTWYIKAEAI 522


>gi|254518915|ref|ZP_05130971.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Clostridium sp.
           7_2_43FAA]
 gi|226912664|gb|EEH97865.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Clostridium sp.
           7_2_43FAA]
          Length = 444

 Score =  451 bits (1161), Expect = e-125,   Method: Composition-based stats.
 Identities = 184/454 (40%), Positives = 278/454 (61%), Gaps = 15/454 (3%)

Query: 18  VDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA 77
           + + I   +++++++GCQMN  DS ++  M  S GY +  S+++A +I+ NTC +RE A 
Sbjct: 1   MKEEIKELKYYIETWGCQMNEEDSEKLSGMLKSVGYTKTESIEEAGIIIYNTCCVRENAE 60

Query: 78  EKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYR 135
            KV+  LG +++LK    K+  DL++ V GC+ Q EG  ++IL++ P VN++ G    Y+
Sbjct: 61  NKVFGNLGELKHLK----KKNPDLIIAVCGCMMQQEGMADKILKKFPHVNIIFGTHNAYK 116

Query: 136 LPELLERAR-FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCV 194
            PE L R +  G +V +      +  E L I     +R+  V AF+TI  GC+ FCT+CV
Sbjct: 117 FPEYLNRVKTEGVQVKEIFNKESEIVEGLPI-----DRESDVKAFVTIMYGCNNFCTYCV 171

Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL 254
           VPY RG E SR    +++E + L+  G  EITLLGQNVN+  GKGL+ E   F+ LL  +
Sbjct: 172 VPYVRGRERSRKSEDIINEIKDLVSKGYKEITLLGQNVNS-YGKGLE-EDIDFAKLLRKI 229

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
           +E+ GL R+R+ TSHP+D++  +I A  + D L   +HLPVQSGSDRILK MNR +T   
Sbjct: 230 NEVDGLERVRFMTSHPKDLNKDVILAIKECDKLCEQIHLPVQSGSDRILKKMNRHYTKEY 289

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
           Y +++D I+   PD+++++D IVGFPGET++DF  T+DLV+++GY  AF+F YS R  TP
Sbjct: 290 YLELVDMIKREIPDVSLTTDIIVGFPGETEEDFLDTLDLVERVGYDSAFTFIYSRRNNTP 349

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLVGRSP 433
              ML QV +  K  R   L K + E  +  N    G+ +EVL+E   K    KL GR+ 
Sbjct: 350 ADMMLNQVPDADKHHRFDRLIKVVNEGVIKSNKVYEGKTVEVLVEGPSKNDATKLTGRTR 409

Query: 434 WLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
             + V  + +N   GD++ V+I   +  +L GE+
Sbjct: 410 NGKLVNFSGENVKAGDLVNVKIVRAQPFSLVGEV 443


>gi|254448584|ref|ZP_05062043.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [gamma proteobacterium
           HTCC5015]
 gi|198261773|gb|EDY86059.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [gamma proteobacterium
           HTCC5015]
          Length = 446

 Score =  451 bits (1161), Expect = e-125,   Method: Composition-based stats.
 Identities = 199/436 (45%), Positives = 281/436 (64%), Gaps = 12/436 (2%)

Query: 36  MNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSR 94
           MN YDS +M D+   + GYE   S ++AD+I++NTC IREKA EKV+S LGR R +K   
Sbjct: 1   MNEYDSDKMLDVLHQADGYELTTSAEEADVILMNTCSIREKAQEKVFSQLGRYRQMKEK- 59

Query: 95  IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK-RVVDTD 153
                DL++ V GCVA  EGE +  R+P V++V GPQT +RLPE++   R  K  VVD  
Sbjct: 60  ---NPDLVIGVGGCVASQEGEALRERAPFVDMVFGPQTLHRLPEMVSSVRIKKMPVVDIS 116

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           +   +KF+ L        R  G +AF++I EGC K+CTFCVVPYTRG E+SR L  V+ E
Sbjct: 117 FPEIEKFDHLP-----APRVEGPSAFVSIMEGCSKYCTFCVVPYTRGEEVSRPLDDVIAE 171

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
             +L   GV EI LLGQNVNA+RG+  +GE C F+ LL+ ++ + G+ R+RYTTSHP + 
Sbjct: 172 IAQLAAAGVREINLLGQNVNAYRGETHEGEICDFATLLHYVAAVDGIDRIRYTTSHPVEF 231

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
           +D +I A+  +  L+ +LHLPVQSG+DRIL +M R H A EY+  I ++R  RP +++SS
Sbjct: 232 TDAIIDAYKTVPELVSHLHLPVQSGADRILAAMKRGHMALEYKSKIRKLRKARPGLSLSS 291

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLC 393
           DFI+GFPGE++ DF  TM L+ +IG+  +FSF YS R GTP SN+ + V   VK ERL  
Sbjct: 292 DFIIGFPGESETDFEQTMSLIREIGFDTSFSFIYSARPGTPASNLPDDVPMTVKKERLKI 351

Query: 394 LQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNSKNHNIGDIIK 452
           LQK++ +     +++ VG I  VL+++  K+   ++ GR+   + V      + IG  + 
Sbjct: 352 LQKEIADNARQISESRVGSIQRVLVDRVSKKDSNEVSGRTECNRVVNFAGSPNLIGLFVD 411

Query: 453 VRITDVKISTLYGELV 468
           VRIT+   ++L GE V
Sbjct: 412 VRITEAYPNSLRGEFV 427


>gi|118602727|ref|YP_903942.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Candidatus Ruthia
           magnifica str. Cm (Calyptogena magnifica)]
 gi|229890637|sp|A1AX14|MIAB_RUTMC RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|118567666|gb|ABL02471.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Candidatus Ruthia
           magnifica str. Cm (Calyptogena magnifica)]
          Length = 444

 Score =  451 bits (1161), Expect = e-125,   Method: Composition-based stats.
 Identities = 188/452 (41%), Positives = 283/452 (62%), Gaps = 16/452 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ +++++GCQMN YDS ++ D+   S G    +    A++++LNTC IREKA EK++  
Sbjct: 2   KKLYIRTFGCQMNEYDSNKIADVLNHSHGLVLTDDAASANVLLLNTCSIREKAQEKLFHQ 61

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR R LK+       +L++ V GCVA  EGE IL R+P V+++ GPQT +RLP +L   
Sbjct: 62  LGRWRKLKDK----NSNLIIGVGGCVASQEGELILERAPYVDIIFGPQTLHRLPSMLNEV 117

Query: 144 RFG------KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197
                    K  +D  +   +KF+ L        +   VTAF++I EGC K+CTFC+VPY
Sbjct: 118 LTPTPGMSVKPSIDISFPEIEKFDHLP-----KPKTSSVTAFVSIMEGCSKYCTFCIVPY 172

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257
           TRG E+SR    V++E + L   GV E+ LLGQNVNA++G   DGE    + L+   ++I
Sbjct: 173 TRGEEVSRPFIDVINEVKILAIQGVREVNLLGQNVNAYQGLMDDGEIADLALLINIAAQI 232

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
            G+ R+RYTTSHP   SD LI+A+ ++  L  +LHLP+QSGSD+IL+ M R H   EY+ 
Sbjct: 233 DGIKRIRYTTSHPTQFSDSLIEAYMEVPKLASHLHLPIQSGSDKILRLMKRGHMVIEYKS 292

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
            I ++R +RPDI+ISSDFI+GFPGE + DF  TM L+D+IG+ ++FSF YS R GT  S+
Sbjct: 293 KIRKLRKIRPDISISSDFIIGFPGENEQDFLDTMTLIDEIGFDKSFSFIYSARPGTLASS 352

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQS 437
            L+ VD +VK +RL  +QK + +     + + VG + ++L+E   K++  L GR+  +++
Sbjct: 353 YLDDVDMDVKKQRLALVQKTIDKNTERISKSMVGSVQKILVENVAKKRDNLFGRTENMRN 412

Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
                    IG I+ ++IT  + ++L G L+ 
Sbjct: 413 THFKGDKSLIGQIVNIKITQGRGNSLVGNLIA 444


>gi|326791331|ref|YP_004309152.1| RNA modification enzyme, MiaB family [Clostridium lentocellum DSM
           5427]
 gi|326542095|gb|ADZ83954.1| RNA modification enzyme, MiaB family [Clostridium lentocellum DSM
           5427]
          Length = 470

 Score =  451 bits (1161), Expect = e-125,   Method: Composition-based stats.
 Identities = 172/445 (38%), Positives = 262/445 (58%), Gaps = 15/445 (3%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           + + ++GCQMN  DS ++E M    GY +  + ++AD I+ NTC +RE A  K+Y  LG 
Sbjct: 35  YCISTFGCQMNARDSEKIEGMLEQIGYTKTENEEEADFIIYNTCCVRENAELKIYGRLGA 94

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLE-RA 143
           ++     R K+  + ++ + GC+ Q +   + + ++   ++++ G    Y+LPELL+ R 
Sbjct: 95  LK----GRRKKNPNFMIALCGCMMQQDIVLDTLKKKFNFIDIIFGTYNIYKLPELLQTRL 150

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
              + V+D   S +D  E L       +RK    A + I  GC+ FCT+C+VPY RG E 
Sbjct: 151 ETKQNVIDIWDSYQDIVEDLP-----DSRKYDFKACVNIMYGCNNFCTYCIVPYVRGRER 205

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR    +V E + L+  GV EI LLGQNVN+  GK LD E  +F++LL  ++ I+GL R+
Sbjct: 206 SRKPEDIVTEIKALVSEGVKEIMLLGQNVNS-YGKTLD-EPISFAELLKQINAIEGLKRI 263

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+ TSHP+D+SD LI+     D + P +HLP QSGS ++LK MNR +T   Y +++ +I+
Sbjct: 264 RFMTSHPKDLSDELIEVMASCDKICPSVHLPFQSGSTKLLKKMNRHYTKESYLELVRKIK 323

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           +  P + +++D IVGFPGET++DF  TM++V+K+ YA AF+F YS R GTP + M +QV 
Sbjct: 324 AAIPRVELTTDIIVGFPGETEEDFLDTMEVVEKVHYASAFTFIYSKRTGTPAATMEDQVP 383

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVLNS 442
           E+V  ER   L   + +Q  +     VGQ +EVL E+  K +   L GR+     V   +
Sbjct: 384 EDVTKERFNRLLALVNKQSAATLHKYVGQTVEVLFEEVSKQDDNVLSGRTDTGLLVNTPA 443

Query: 443 KNHNIGDIIKVRITDVKISTLYGEL 467
               +G  +KV I D K   L GEL
Sbjct: 444 PKEYVGKFVKVHIVDNKTHYLIGEL 468


>gi|87119366|ref|ZP_01075264.1| hypothetical protein MED121_13890 [Marinomonas sp. MED121]
 gi|86165757|gb|EAQ67024.1| hypothetical protein MED121_13890 [Marinomonas sp. MED121]
          Length = 438

 Score =  451 bits (1161), Expect = e-125,   Method: Composition-based stats.
 Identities = 179/436 (41%), Positives = 280/436 (64%), Gaps = 12/436 (2%)

Query: 36  MNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSR 94
           MN YDS RM D+   S   E  ++ ++AD+++LNTC IREKA +KVY  LGR + LK+  
Sbjct: 1   MNEYDSSRMADLLGDSHEMELTDNAEEADVLLLNTCSIREKAQDKVYHQLGRWKKLKDK- 59

Query: 95  IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDY 154
                DL + V GCVA  EG+ I +R+  V+++ GPQT ++LPE+++ A     + D  +
Sbjct: 60  ---NPDLKIGVGGCVASQEGDSIRKRAKHVDMIFGPQTLHKLPEMVDAAANSIPITDVTF 116

Query: 155 SVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEA 214
              +KF+ L        +  G  AF++I EGC K+CTFCVVPYTRG E+SR  + ++ E 
Sbjct: 117 PEIEKFDHLP-----APKVEGAEAFVSIMEGCSKYCTFCVVPYTRGEEVSRPFTDILVEV 171

Query: 215 RKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMS 274
            +L + GV EI LLGQNVNA+RG   +G +   +D++ ++++I G+ R+R+TTSHP + +
Sbjct: 172 MQLAEQGVREIHLLGQNVNAYRGVDNEGTESDLADVISAIAQIDGVERIRFTTSHPVEFT 231

Query: 275 DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSD 334
           D LI+A  ++  L+ +LHLPVQSG+D ILK+M R H    Y   I+RI+  RP I++SSD
Sbjct: 232 DSLIEAFRNIPKLVSHLHLPVQSGADNILKAMKRGHDRQSYIDKINRIKEARPGISLSSD 291

Query: 335 FIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCL 394
           FI+GFPGETD DF  TM+L+ +IG+  +FSF YS R GTP S++ + + E+VK +RL  L
Sbjct: 292 FIIGFPGETDQDFMDTMNLIQEIGFDHSFSFIYSQRPGTPASDLEDNISEDVKKQRLAIL 351

Query: 395 QKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLNS-KNHNIGDIIK 452
           Q+++++    ++ A +G    +L+  +  ++ G++ GR+   + V  ++ +   +G    
Sbjct: 352 QRRIKQHAYDYSQAMIGSTQRILVSGYSPRDPGQMQGRTENNRIVNFSAVEPQLVGKFAD 411

Query: 453 VRITDVKISTLYGELV 468
           V IT+   ++L GE++
Sbjct: 412 VIITNAYPNSLLGEMI 427


>gi|116747867|ref|YP_844554.1| RNA modification protein [Syntrophobacter fumaroxidans MPOB]
 gi|229891028|sp|A0LFB7|MIAB_SYNFM RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|116696931|gb|ABK16119.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Syntrophobacter
           fumaroxidans MPOB]
          Length = 456

 Score =  451 bits (1161), Expect = e-124,   Method: Composition-based stats.
 Identities = 174/457 (38%), Positives = 264/457 (57%), Gaps = 9/457 (1%)

Query: 13  MVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHI 72
           M++ +      P+  +V+++GCQMN YDS R   +  + GY   + + DAD+I LNTC +
Sbjct: 1   MITPLAKTAPAPRYLYVRTFGCQMNEYDSQRALRLLCAVGYRPTSDIADADVIFLNTCSV 60

Query: 73  REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT 132
           R+KA +KVYSFLGR+R LK         L +VVAGCVAQ  G+ +L+R   V++VVG + 
Sbjct: 61  RDKAEQKVYSFLGRLRRLKA----HRPWLKIVVAGCVAQQLGDGLLKRFEHVDLVVGTRG 116

Query: 133 YYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTF 192
              +  LLE     KR V   +   ++ +  +           V A +TI +GC+ FCT+
Sbjct: 117 IGSIASLLEEVERSKRRVA--HLPAEELQGFTTDKCRTVGTGDVVAQVTIMQGCNNFCTY 174

Query: 193 CVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLY 252
           C+VP+ RG E SR+   ++ E   L   G  E+ LLGQNVN+  G+GL  +  +F DLL 
Sbjct: 175 CIVPHVRGRERSRAPDDILREIDFLASRGAREVLLLGQNVNS-YGRGLP-DPISFPDLLR 232

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
            + +   + R+R+TTSHP+D+++ LI+    L  L  +LHLP QSGSD ILK M+R +TA
Sbjct: 233 RIGKETSIRRVRFTTSHPKDLTEDLIECFAGLPFLCKHLHLPFQSGSDGILKLMHRGYTA 292

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
            +Y + I R+R V P+IA+S+D IVGFP E+++D+  T+ L++++ +   FSF+YS R  
Sbjct: 293 RQYLEKIARLREVCPEIALSTDVIVGFPAESEEDYLQTLRLIEEVRFDSLFSFRYSDRPL 352

Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGR 431
           T  +   ++V  +VK  RL  LQ    +  +  N A  G + EVL+E   K   G++ GR
Sbjct: 353 TRAAGFPDKVPMDVKVRRLARLQSIQADITLQKNLAETGTVREVLVEGPSKASNGQMTGR 412

Query: 432 SPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           +   + +         G I+ VRI      +L GEL+
Sbjct: 413 TQQNRIINFQCPVDLTGKIVPVRIVAAYSHSLKGELL 449


>gi|326776162|ref|ZP_08235427.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Streptomyces cf. griseus XylebKG-1]
 gi|326656495|gb|EGE41341.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Streptomyces cf. griseus XylebKG-1]
          Length = 506

 Score =  451 bits (1160), Expect = e-124,   Method: Composition-based stats.
 Identities = 177/453 (39%), Positives = 261/453 (57%), Gaps = 20/453 (4%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDD--ADLIVLNTCHIREKAAEKV 80
           V + + V++YGCQMNV+DS R+  +    GY R     D  AD++V NTC +RE A  K+
Sbjct: 12  VQKSYEVRTYGCQMNVHDSERLSGLLEGAGYVRAPEGSDGDADVVVFNTCAVRENADNKL 71

Query: 81  YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140
           Y  LGR+  +K  R      + + V GC+AQ + + I++R+P V+VV G     +LP LL
Sbjct: 72  YGNLGRLAPMKTKR----PGMQIAVGGCLAQKDRDTIVKRAPWVDVVFGTHNIGKLPVLL 127

Query: 141 ERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           ERAR  +   ++   S+E     L        R+    A+++I  GC+  CTFC+VP  R
Sbjct: 128 ERARVQEEAQIEIAESLEAFPSTLPT-----RRESAYAAWVSISVGCNNTCTFCIVPALR 182

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G E  R    ++ E   L+  GVCEITLLGQNVNA  G  + G++  FS LL +  +I+G
Sbjct: 183 GKEKDRRTGDILAEIEALVAEGVCEITLLGQNVNA-YGSDI-GDREAFSKLLRACGKIEG 240

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           L R+R+T+ HPRD +D +I A  +   +MP LH+P+QSGSD ILK+M R +    +  II
Sbjct: 241 LERVRFTSPHPRDFTDDVIAAMAETPNVMPQLHMPMQSGSDTILKAMRRSYRQERFLGII 300

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
           +++R+  P+ AIS+D IVGFPGET++DF  TM  V +  +A AF+F+YS R GTP ++M 
Sbjct: 301 EKVRAAMPEAAISTDIIVGFPGETEEDFEQTMHAVREARFANAFTFQYSKRPGTPAADMD 360

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKG---KLVGRSPWL 435
            Q+ + V  ER + L     +     N   VG+ ++V++ E  G++ G   +L GR+P  
Sbjct: 361 GQIPKEVVQERYMRLSALQEQISWDENKKQVGRTLDVMVAEGEGRKDGATQRLSGRAPDN 420

Query: 436 QSVVL--NSKNHNIGDIIKVRITDVKISTLYGE 466
           + V      K    GD++ V IT      L  E
Sbjct: 421 RLVHFTQPEKAVRPGDVVTVEITYAAPHHLLAE 453


>gi|328952579|ref|YP_004369913.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Desulfobacca acetoxidans DSM 11109]
 gi|328452903|gb|AEB08732.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Desulfobacca acetoxidans DSM 11109]
          Length = 440

 Score =  451 bits (1160), Expect = e-124,   Method: Composition-based stats.
 Identities = 189/445 (42%), Positives = 278/445 (62%), Gaps = 16/445 (3%)

Query: 24  PQR-FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           P++  ++K+YGCQMNVYDS ++  +     Y+  +  ++ADL ++NTC IR K+ EKV S
Sbjct: 4   PKKNLYIKTYGCQMNVYDSEQIALILGRD-YDLTDRPEEADLYLINTCSIRRKSEEKVLS 62

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE- 141
            +GR++ LKN R      +L+ V GCVAQ EGE +L+R+P +++V G Q  YRLP LL  
Sbjct: 63  LVGRLKGLKNRR----PQMLLGVGGCVAQQEGERLLQRAPHLDLVFGAQGIYRLPHLLHQ 118

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           R   GK VVDT +S +  +    +  G   +       +TI +GC+ +CT+CVVPY RG 
Sbjct: 119 RLESGKAVVDTSFSADLPYISGQVKPGAPKK------LVTIMQGCNNYCTYCVVPYVRGP 172

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR  ++V++E +  +  G  E+TLLGQNVN+  GKGL  +  +F  LL  L+++ GLV
Sbjct: 173 ERSRPAAEVINEVQDFLRQGGQEVTLLGQNVNS-YGKGL-ADGLSFPGLLRRLAKLPGLV 230

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           RLR+TTSHPRD+SD LI    +L  L  ++HLPVQ+GS+ IL  M+R +T  EY   ++R
Sbjct: 231 RLRFTTSHPRDLSDDLICCFAELPPLCDHIHLPVQAGSNHILARMHRGYTREEYLHKVNR 290

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R + P I++++D IVGFPGET+ DF  T+ L+ ++ +  AF FKYSPR  T  + +++Q
Sbjct: 291 LRQICPGISLTTDLIVGFPGETEADFADTLALMREVAFDAAFYFKYSPRPQTAAAALVDQ 350

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLVGRSPWLQSVVL 440
           + E VKAERL  L+    E  ++ N   VGQ  EVL+E   K++  +L GR    Q V  
Sbjct: 351 IPEPVKAERLARLRILQEELSLASNQRLVGQFKEVLVEGLSKQQNQQLCGRLRSNQVVNF 410

Query: 441 NSKNHNIGDIIKVRITDVKISTLYG 465
           +     IG ++ VRI    + +L G
Sbjct: 411 DGPQDLIGRMVWVRIEKANLHSLGG 435


>gi|302537334|ref|ZP_07289676.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Streptomyces sp. C]
 gi|302446229|gb|EFL18045.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Streptomyces sp. C]
          Length = 506

 Score =  451 bits (1160), Expect = e-124,   Method: Composition-based stats.
 Identities = 175/462 (37%), Positives = 264/462 (57%), Gaps = 21/462 (4%)

Query: 15  SQIVDQCIVPQ-RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDD--ADLIVLNTCH 71
           S      + P+  + V++YGCQMNV+DS R+  +    GY R     D  AD++V NTC 
Sbjct: 5   SDRSTAVVDPKGTYEVRTYGCQMNVHDSERLSGLLEDAGYVRAPEGSDGDADVVVFNTCA 64

Query: 72  IREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ 131
           +RE A  K+Y  LGR+  +K  R      + + V GC+AQ + + I++++P V+VV G  
Sbjct: 65  VRENADNKLYGNLGRLAPMKTKR----PGMQIAVGGCLAQKDRDTIVKKAPWVDVVFGTH 120

Query: 132 TYYRLPELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190
              +LP LLERAR  +   ++   S+E     L        R+    A+++I  GC+  C
Sbjct: 121 NIGKLPVLLERARVQEEAQIEIAESLEAFPSTLPT-----RRESAYAAWVSISVGCNNTC 175

Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDL 250
           TFC+VP  RG E  R    ++ E   L+  GV EITLLGQNVNA  G  L G++  FS L
Sbjct: 176 TFCIVPALRGKEEDRRPGDILAEVEALVAEGVSEITLLGQNVNA-YGSDL-GDREAFSKL 233

Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
           L +  +I+GL R+R+T+ HP+D +D +I A  +   +MP LH+P+QSGSD IL++M R +
Sbjct: 234 LRACGQIEGLERVRFTSPHPKDFTDDVIAAMAETPNVMPQLHMPLQSGSDPILRAMRRSY 293

Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370
               +  II+++R+  P  AIS+D IVGFPGET++DF+ TM +V +  +A AF+F+YS R
Sbjct: 294 RQERFLGIIEKVRAAIPHAAISTDIIVGFPGETEEDFQQTMHVVREARFAGAFTFQYSKR 353

Query: 371 LGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKG--- 426
            GTP ++M  Q+ + V  +R + L     E     N   VG+ +EV++ E  G++ G   
Sbjct: 354 PGTPAADMEGQIPKEVVQDRYMRLVALQEEISWEENKKQVGRTLEVMVAEGEGRKDGATA 413

Query: 427 KLVGRSPWLQSVVL--NSKNHNIGDIIKVRITDVKISTLYGE 466
           +L GR+P  + V      ++   GD++ V IT      L  E
Sbjct: 414 RLSGRAPDNRLVHFTKPDEDVRPGDVVTVEITYAAPHHLLAE 455


>gi|225174619|ref|ZP_03728617.1| RNA modification enzyme, MiaB family [Dethiobacter alkaliphilus AHT
           1]
 gi|225169746|gb|EEG78542.1| RNA modification enzyme, MiaB family [Dethiobacter alkaliphilus AHT
           1]
          Length = 457

 Score =  451 bits (1160), Expect = e-124,   Method: Composition-based stats.
 Identities = 177/449 (39%), Positives = 270/449 (60%), Gaps = 16/449 (3%)

Query: 23  VPQRFFVKS-YGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++ +  + +GCQMN  D+  +       GYE V+ ++ ADL+++NTC +R+KA EKV+
Sbjct: 4   MKKKTYTMTVFGCQMNERDAETLRGFLDEIGYEEVDEVEGADLVIMNTCAVRQKAEEKVF 63

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAE--GEEILRRSPIVNVVVGPQTYYRLPEL 139
             +GR+  LK    KE  ++++ V GC+ Q E   ++I +  P V+++ G       PEL
Sbjct: 64  GRIGRLGVLK----KENPEMMIAVCGCMVQQEDVAKKIKKSYPFVDLIFGTHNIAAFPEL 119

Query: 140 LERARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
           L+RA   K  V+D      D  E L +      RK GV A++ I  GC+ FC++C+VPY 
Sbjct: 120 LQRAAESKETVLDLWDEAGDVVEGLPVT-----RKDGVKAWVNITYGCNNFCSYCIVPYV 174

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258
           RG E SR   ++++E + L   G  E+TLLGQNVN+  GK L+ E+  F+DLL  +    
Sbjct: 175 RGRERSRKPEEIINEIKALAKQGFKEVTLLGQNVNS-YGKDLE-EEMDFADLLVRVDRET 232

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
            + R+R+ TSHPRD ++ L K  G+ D +  ++HLP+Q+GS+RILK MNR +T   Y  +
Sbjct: 233 DINRIRFMTSHPRDFTEKLAKVMGECDSVCEHVHLPIQAGSNRILKLMNRGYTKEHYLDL 292

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           +D +R   PD A+S+D IVGFPGET++DF  T+D+VD++GY  AF+F YSPR GTP ++M
Sbjct: 293 VDILRKYAPDCALSTDIIVGFPGETEEDFLDTLDVVDRVGYDMAFTFLYSPRSGTPAADM 352

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQS 437
             QV   VK ER   L +   +  +  N   VG+ +EVL+E   K + G + GR+   ++
Sbjct: 353 PHQVANEVKKERFQRLLEVQNKHSLRHNQEAVGKTVEVLVEGPSKTDPGVMTGRTRSSKT 412

Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGE 466
           V    +N N GD++ V IT  +  +L G 
Sbjct: 413 VNFTGENVNAGDLVMVEITQARTWSLLGR 441


>gi|152969257|ref|YP_001334366.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
 gi|150954106|gb|ABR76136.1| hypothetical protein KPN_00686 [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
          Length = 453

 Score =  451 bits (1160), Expect = e-124,   Method: Composition-based stats.
 Identities = 184/428 (42%), Positives = 272/428 (63%), Gaps = 12/428 (2%)

Query: 44  MEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLL 102
           M D+  +  GY+     ++AD+++LNTC IREKA EKV+  LGR + LK        DL+
Sbjct: 1   MADLLDATHGYQLTEVAEEADVLLLNTCSIREKAQEKVFHQLGRWKLLKEK----NPDLI 56

Query: 103 VVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR-VVDTDYSVEDKFE 161
           + V GCVA  EG+ I +R+  V+++ GPQT +RLPE++   R  +  VVD  +   +KF+
Sbjct: 57  IGVGGCVASQEGDHIRQRAHYVDIIFGPQTLHRLPEMINSVRGNRSPVVDISFPEIEKFD 116

Query: 162 RLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNG 221
           RL        R  G TAF++I EGC+K+CT+CVVPYTRG E+SR    ++ E  +L   G
Sbjct: 117 RLP-----EPRAEGPTAFVSIMEGCNKYCTYCVVPYTRGEEVSRPCDDILFEIAQLAAQG 171

Query: 222 VCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAH 281
           V E+ LLGQNVNAWRG+  DG   +F+DLL  ++ I G+ R+R+TTSHP + +D +I  +
Sbjct: 172 VREVNLLGQNVNAWRGENYDGTTGSFADLLRLVAAIDGIDRIRFTTSHPIEFTDDIIDVY 231

Query: 282 GDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPG 341
            D   L+ +LHLPVQSGSDR+L  M R HTA EY+ II ++R  RPDI ISSDFIVGFPG
Sbjct: 232 RDTPELVSFLHLPVQSGSDRVLNLMGRTHTALEYKAIIRKLREARPDIQISSDFIVGFPG 291

Query: 342 ETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQ 401
           ET +DF  TM L+  + +  ++SF +S R GTP ++M++ V E  K +RL  LQ+++ +Q
Sbjct: 292 ETTEDFEKTMKLIADVNFDMSYSFIFSARPGTPAADMVDDVPEADKKQRLYILQERINQQ 351

Query: 402 QVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKI 460
            ++++   +G +  +L+E   ++   +L GR+   + V        +G  + V I DV  
Sbjct: 352 AMAWSRRMLGTVQRILVEGTSRKNIMELSGRTENNRVVNFEGTPDLVGKFVDVEIVDVYT 411

Query: 461 STLYGELV 468
           ++L G++V
Sbjct: 412 NSLRGKIV 419


>gi|169830740|ref|YP_001716722.1| RNA modification protein [Candidatus Desulforudis audaxviator
           MP104C]
 gi|229890512|sp|B1I241|MIAB_DESAP RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|169637584|gb|ACA59090.1| RNA modification enzyme, MiaB family [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 443

 Score =  450 bits (1159), Expect = e-124,   Method: Composition-based stats.
 Identities = 178/449 (39%), Positives = 274/449 (61%), Gaps = 14/449 (3%)

Query: 23  VPQRF-FVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++F    ++GCQMN +DS  M  +    GYE   S+ +ADL+++NTC +RE A  +V+
Sbjct: 3   MERKFVHTITFGCQMNEFDSELMTGLLEGMGYEPAKSLREADLVLINTCCVRESAENRVW 62

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPEL 139
             LG ++  K    ++  +L+V V+GC+ Q EG  EEI+RR P+V++V+G    + LP L
Sbjct: 63  GLLGSLKRYK----RDKPELIVAVSGCLPQQEGTAEEIIRRFPVVDLVLGTHNRHELPGL 118

Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           +E  R G+R V      +        V     RK G+ A++ +  GC+ FCT+CVVPY R
Sbjct: 119 IEEVRAGRRPVLGVRQPDSAVPEGLPVR----RKSGLRAWVPVIHGCNNFCTYCVVPYVR 174

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G E SR    VVDE   L   G  E+TLLGQNVN+  G+ L GE   F+ LL  L  ++G
Sbjct: 175 GRECSRRPDAVVDEVCGLAAAGYREVTLLGQNVNS-YGRDL-GEGIDFAALLARLDGVEG 232

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           L R+R+TTSHPRD +D LI+       +  ++HLP Q+GS+R+L+ MNR +T  +Y  ++
Sbjct: 233 LWRIRFTTSHPRDFTDRLIEVVARAAKVCEHIHLPAQAGSNRVLQRMNRGYTREDYLDLV 292

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            RIR+  PD+++++D +VGFPGET++DF  T+DLV ++GY QAF+F Y+PR GTP +   
Sbjct: 293 ARIRAAVPDVSLTTDLMVGFPGETEEDFADTLDLVRRVGYDQAFTFVYNPRRGTPAAGWP 352

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSV 438
           +QV E+VK+ R+  L +  +E  ++ N A  G+++EVL+E         L GRS   ++V
Sbjct: 353 DQVPEDVKSRRIQELIQVQKEIGLARNRAEEGKVLEVLVEGPSATRPDLLSGRSRTNKTV 412

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGEL 467
           V   +    G +++VR+    ++ L G +
Sbjct: 413 VFPGEPGLAGQLVRVRVEVGHLTYLAGRV 441


>gi|237722101|ref|ZP_04552582.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|293371177|ref|ZP_06617713.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacteroides ovatus SD CMC
           3f]
 gi|299145161|ref|ZP_07038229.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacteroides sp. 3_1_23]
 gi|229448970|gb|EEO54761.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|292633738|gb|EFF52291.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacteroides ovatus SD CMC
           3f]
 gi|298515652|gb|EFI39533.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacteroides sp. 3_1_23]
          Length = 457

 Score =  450 bits (1159), Expect = e-124,   Method: Composition-based stats.
 Identities = 160/446 (35%), Positives = 255/446 (57%), Gaps = 10/446 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F+++YGCQMNV DS  +  +    GY    ++++AD + +NTC IR+ A +K+ + L
Sbjct: 20  KKLFIETYGCQMNVADSEVIASVMQMAGYSVAETLEEADAVFMNTCSIRDNAEQKILNRL 79

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
               +L     K+   L+V V GC+A+   ++++     V++VVGP  Y  LP+L+    
Sbjct: 80  EFFHSL----KKKKKHLIVGVLGCMAERVKDDLITNH-HVDLVVGPDAYLTLPDLIAAVE 134

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G++ ++ + S  + +  +       N   G   F++I  GC+ FCT+C+VPYTRG E S
Sbjct: 135 TGEKAINVELSTTETYRDVIPSRICGNHISG---FVSIMRGCNNFCTYCIVPYTRGRERS 191

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R +  +++E   L+  G  E+TLLGQNVN++R +   GE  TF  LL +++E    VR+R
Sbjct: 192 RDVESILNEVADLVTKGYKEVTLLGQNVNSYRFERPTGEVVTFPMLLRTVAEAAPGVRIR 251

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +TTSHP+DMSD  ++    +  +  ++HLPVQSGS RILK MNR++T   Y   +  I+ 
Sbjct: 252 FTTSHPKDMSDETLEVIAQVPNVCKHIHLPVQSGSSRILKLMNRKYTREWYLDRVAAIKR 311

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN-MLEQVD 383
           + PD  +++D   GF  ET++D   ++ L+++ GY  AF FKYS R GT  S  + + V 
Sbjct: 312 IIPDCGLTTDIFSGFHSETEEDHALSLSLMEECGYDAAFMFKYSERPGTYASKHLEDNVP 371

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNS 442
           E VK  RL  +           N  C+G+  EVL+E   K    +L GR+   + VV + 
Sbjct: 372 EEVKVRRLNEIIALQNRLSAESNQRCIGKTYEVLVEGVSKRSRDQLFGRTEQNRVVVFDR 431

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
             H +GD + VR+T+   +TL GE +
Sbjct: 432 GTHRVGDFVNVRVTEASSATLKGEEI 457


>gi|222055271|ref|YP_002537633.1| RNA modification enzyme, MiaB family [Geobacter sp. FRC-32]
 gi|221564560|gb|ACM20532.1| RNA modification enzyme, MiaB family [Geobacter sp. FRC-32]
          Length = 440

 Score =  450 bits (1159), Expect = e-124,   Method: Composition-based stats.
 Identities = 175/443 (39%), Positives = 263/443 (59%), Gaps = 9/443 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +  +++++GCQMNV DS ++  +  + GY   N    ADLI+LNTC +R +A EKVY+ L
Sbjct: 5   KLLYLQTFGCQMNVSDSEKIAGLLKNIGYRPTNDSSLADLIILNTCSVRARAEEKVYNHL 64

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            + + LK  R K     L+ V GCVAQ EGE +L   P ++ V G    + LPEL+  A 
Sbjct: 65  VQYKGLKRKRPKI----LIGVGGCVAQQEGERLLLNIPHLDFVFGTHNLHLLPELVLSAE 120

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G+R  +TD+   D    L  VD   N   GV+ F+T+ +GCD FC++C+VPY RG EIS
Sbjct: 121 KGERQAETDFIDNDSRLDLFPVD---NSTNGVSRFVTVMQGCDNFCSYCIVPYVRGREIS 177

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R  + +++E  +L   GV E+TLLGQNVN+  G   DGE   F  LL  +SEI G+ RLR
Sbjct: 178 RRSADILEEISQLAAKGVKEVTLLGQNVNS-YGLKSDGE-LDFVTLLRQVSEIPGIERLR 235

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +TTSHP+D S  LI    ++  L  ++HLP Q+GS+ +L +MNR ++  EY  +I ++++
Sbjct: 236 FTTSHPKDFSRQLIDCFAEMPKLCKHVHLPAQAGSNAVLSAMNRGYSREEYLSLIGQLKT 295

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           V P I I+ D IVGFPGET+ DF+ T+ L++++ Y   FSF YS R  T  +   + + +
Sbjct: 296 VSPGIQITGDIIVGFPGETETDFQETLSLLEEVRYTDVFSFIYSKRPETKAAGYTDHISQ 355

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
             K  RL  L    R+  +  N +  G + EVL+E   +  G++ GR    + V + +  
Sbjct: 356 KEKQMRLDRLLAMQRKITLENNRSFEGSVQEVLVEGESRRGGQIYGRISGNRIVNITADP 415

Query: 445 HNIGDIIKVRITDVKISTLYGEL 467
             +G +++V IT  + ++L GEL
Sbjct: 416 ALVGQMVRVTITRGEQNSLQGEL 438


>gi|297559650|ref|YP_003678624.1| RNA modification enzyme, MiaB family [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296844098|gb|ADH66118.1| RNA modification enzyme, MiaB family [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
          Length = 496

 Score =  450 bits (1159), Expect = e-124,   Method: Composition-based stats.
 Identities = 171/450 (38%), Positives = 260/450 (57%), Gaps = 19/450 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + + V++YGCQMNV+DS R+  +    GY R      AD++V NTC +RE A  ++Y  L
Sbjct: 5   RTYQVRTYGCQMNVHDSERLSGLLEDAGYARAAEDTTADIVVFNTCAVRENADNRLYGNL 64

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           G +R +K++       + + V GC+AQ +  EI+RR+P V+VV G      LP LLER+R
Sbjct: 65  GHLRPVKDA----NPGMQIAVGGCLAQKDRGEIVRRAPWVDVVFGTHNIGSLPALLERSR 120

Query: 145 FGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             +   V+   S+E     L        R+    A++++  GC+  CTFC+VP  RG E 
Sbjct: 121 VQREAQVEIAESLEHFPSTLP-----SRRESAYAAWVSVSVGCNNTCTFCIVPALRGKEQ 175

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
            R    V+ E R L+D GV EITLLGQNVNA  G G  G++  FS LL +  EI+GL R+
Sbjct: 176 DRRPGDVLAEVRALVDEGVSEITLLGQNVNA-YGSGF-GDRQAFSKLLRACGEIEGLERV 233

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+T+ HPRD +D +I+A  +   +MP LH+P+QSGS R+LK+M R +    +  I++++R
Sbjct: 234 RFTSPHPRDFTDDVIEAMAETPNVMPQLHMPLQSGSSRVLKAMRRSYRQERFLGIVEKVR 293

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           +  P  AI++D IVGFPGET++DF+ T+ +V +  ++ AF+F+YS R GTP + M +QV 
Sbjct: 294 AAMPHAAITTDIIVGFPGETEEDFQETLHVVREARFSMAFTFQYSKRPGTPAATMDDQVP 353

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKG---KLVGRSPWLQSVV 439
             V  +R   L     +     N   VG+ +E+L+ E  G++ G   +L GR+P  + V 
Sbjct: 354 PEVVKDRYQRLVDLQDQISWEENQKLVGREVELLVAEGEGRKDGEHRRLSGRAPDNRLVH 413

Query: 440 L---NSKNHNIGDIIKVRITDVKISTLYGE 466
               +  +   GD + V +T      L  +
Sbjct: 414 FAVGDGDDPRPGDTVTVEVTYAAPHHLVAD 443


>gi|254881037|ref|ZP_05253747.1| SAM/TRAM family methylase [Bacteroides sp. 4_3_47FAA]
 gi|319640044|ref|ZP_07994771.1| hypothetical protein HMPREF9011_00368 [Bacteroides sp. 3_1_40A]
 gi|254833830|gb|EET14139.1| SAM/TRAM family methylase [Bacteroides sp. 4_3_47FAA]
 gi|317388322|gb|EFV69174.1| hypothetical protein HMPREF9011_00368 [Bacteroides sp. 3_1_40A]
          Length = 456

 Score =  450 bits (1159), Expect = e-124,   Method: Composition-based stats.
 Identities = 163/446 (36%), Positives = 260/446 (58%), Gaps = 10/446 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F+++YGCQMNV DS  +  +    GY    ++D+AD + +NTC IR+ A +K+ + L
Sbjct: 18  KKLFIETYGCQMNVADSEVVASIMQMAGYHVCETLDEADAVFMNTCSIRDNAEQKILNRL 77

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
               ++K ++ +   +L+V V GC+A+   ++++     V++VVGP  Y  LP+L+    
Sbjct: 78  EFFHSMKKNKRR---NLIVGVLGCMAERVKDDLIENH-HVDLVVGPDAYLTLPDLVASVE 133

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G++ ++ + S  + +  +       N   G   F++I  GC+ FC +C+VPYTRG E S
Sbjct: 134 AGEKAINVELSTTETYREVIPSRICGNHISG---FVSIMRGCNNFCHYCIVPYTRGRERS 190

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R +  +++E R L D G  E+TLLGQNVN++R +  +GE  TF  LL +++E    +R+R
Sbjct: 191 RDVESILNEVRDLADKGYKEVTLLGQNVNSYRFE-KEGEIITFPMLLRTVAEAVPDMRVR 249

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +TTSHP+DMSD  ++   +   +  ++HLPVQSGS RILK MNR++T   Y + +  IR 
Sbjct: 250 FTTSHPKDMSDETLQVIAETPNVCKHIHLPVQSGSSRILKLMNRKYTREWYLERVAAIRR 309

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN-MLEQVD 383
           + PD  +S+D   G+  ET++D + ++ L+ +  Y  AF FKYS R GT  S  + + V 
Sbjct: 310 IIPDCGLSTDIFSGYHSETEEDHQESLSLMRECAYDSAFMFKYSERPGTYASKHLPDDVP 369

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNS 442
           E VK  RL  + +         N   VG+  EV++E   K    +L GR+   + VV + 
Sbjct: 370 EEVKIRRLNEIIELQNRLSAESNARDVGKTFEVMVEGVSKRSREQLFGRTQQNKVVVFDR 429

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
            NH IGD + VRIT+   +TL GE V
Sbjct: 430 GNHRIGDFVHVRITEASSATLKGEEV 455


>gi|257455516|ref|ZP_05620748.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Enhydrobacter aerosaccus
           SK60]
 gi|257447085|gb|EEV22096.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Enhydrobacter aerosaccus
           SK60]
          Length = 488

 Score =  450 bits (1158), Expect = e-124,   Method: Composition-based stats.
 Identities = 197/474 (41%), Positives = 292/474 (61%), Gaps = 25/474 (5%)

Query: 10  VAHMVSQIVDQCIVP-----QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDAD 63
           V   ++  V+  + P     +R F+++ GCQMNVYDS +M D+   S G    ++ ++AD
Sbjct: 19  VTPTLAVSVEPNMPPADTRVKRVFIETQGCQMNVYDSEKMADVLGDSHGMVLTDNPEEAD 78

Query: 64  LIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPI 123
           ++++NTC IREKA EKV+S LGR + LK        +L++ V GCVA  EG++I  R+P 
Sbjct: 79  VLLMNTCSIREKAQEKVFSELGRWKKLKEK----NPNLVIGVGGCVASQEGDKIQARAPH 134

Query: 124 VNVVVGPQTYYRLPELLER------ARFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRG 175
           V++V GPQT +RLPEL ++       +   R  VVD  +   +KF+ L        +  G
Sbjct: 135 VDMVFGPQTLHRLPELYDQSTKQLDVKPKNRIGVVDVSFPSIEKFDFLP-----EPKVEG 189

Query: 176 VTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW 235
             AF++I EGC K+C+FCVVPYTRG EISR L  V+ E   L   GV E+TLLGQNVN +
Sbjct: 190 FKAFVSIMEGCSKYCSFCVVPYTRGEEISRPLDDVLAEIDSLASQGVREVTLLGQNVNGY 249

Query: 236 RGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPV 295
           RG+  DG  C FS+LL+ ++ + G+ R+RYTTSHP + SD +I+A+  +  L+ +LHLPV
Sbjct: 250 RGEKHDGTICRFSELLHYVAHVDGIERIRYTTSHPLEFSDDIIEAYAKIPKLVSHLHLPV 309

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
           QSGS+ IL +M R HT   Y + I ++R+VRPD+ +SSDFI+GFP ETD DF+ T++L  
Sbjct: 310 QSGSNAILAAMKRNHTIDIYIEQIRKLRAVRPDMYLSSDFIIGFPNETDKDFQDTLNLAK 369

Query: 356 KIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIE 415
            + +  ++SF YS R GTP S++ + +D   K  RL   QK + +   +     VGQ + 
Sbjct: 370 DLDFDHSYSFIYSKRPGTPASDLPDNIDIATKKARLAEFQKVIVDSTWAKTQGMVGQTVR 429

Query: 416 VLIEKHG-KEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLY-GEL 467
           VL+E+HG +    L+G +   ++V+    +  IG ++ V++T      L  GEL
Sbjct: 430 VLVEQHGDRNPEFLMGTADNTRTVLFKGDDALIGKLVMVKVTRAMSPHLVEGEL 483


>gi|67922391|ref|ZP_00515902.1| Protein of unknown function UPF0004:tRNA-i(6)A37 modification
           enzyme MiaB [Crocosphaera watsonii WH 8501]
 gi|67855735|gb|EAM50983.1| Protein of unknown function UPF0004:tRNA-i(6)A37 modification
           enzyme MiaB [Crocosphaera watsonii WH 8501]
          Length = 452

 Score =  450 bits (1158), Expect = e-124,   Method: Composition-based stats.
 Identities = 185/459 (40%), Positives = 276/459 (60%), Gaps = 23/459 (5%)

Query: 21  CIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKV 80
              P+R+ + ++GCQMN  DS RM  +    G++     + ADLI+ NTC IR+ A +KV
Sbjct: 2   TSTPRRYHITTFGCQMNKADSERMAGILEDMGFKWSQDPNGADLILYNTCTIRDNAEQKV 61

Query: 81  YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140
           YS+LGR    K+       DL +VVAGCVAQ EGE+ILRR P +++V+GPQ   RL +LL
Sbjct: 62  YSYLGRQAKRKHK----NPDLTLVVAGCVAQQEGEKILRRVPELDLVMGPQHANRLEDLL 117

Query: 141 ERARFGKRVVDTD--YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
            +   G +V+ T+  + VED  +          R   VTA++ I  GC++ C++CVVP  
Sbjct: 118 TQVFDGNQVIATEPIHIVEDITKP--------RRDSTVTAWVNIIYGCNEKCSYCVVPSV 169

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG------EKCTFSDLLY 252
           RG+E SR+   +  E   L   G  E+TLLGQN++A  G+ L G       K T +DLLY
Sbjct: 170 RGVEQSRTPEAIYAEMELLAKQGYKEVTLLGQNIDA-YGRDLPGVTASGRHKHTLTDLLY 228

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
            + +I G+ RLR+ TSHPR  ++ LIKA  +L  +  + H+P QSG + +LK+M R +T 
Sbjct: 229 QVHDIPGIERLRFATSHPRYFTERLIKACDELPKVCEHFHIPFQSGDNDVLKAMKRGYTH 288

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
            +YR+IID+IR   PD +IS+D IVGFP ET++ F  T+ LVD IG+ Q  +  YSPR G
Sbjct: 289 QKYRKIIDKIREYMPDASISADAIVGFPEETEEQFENTLKLVDDIGFDQLNTAAYSPRPG 348

Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGR 431
           TP +   +Q+ E VK++RL  L   + ++    +   +G+I EVL+E ++ K+  +++GR
Sbjct: 349 TPAALWEQQLSEEVKSDRLQRLNHLVAQKAAQRSQRYLGRIEEVLVEDQNPKDNSQVMGR 408

Query: 432 SPWLQSVVLNSK-NHNIGDIIKVRITDVKISTLYGELVV 469
           +   +        +   G +IKV IT+V+  +L GE +V
Sbjct: 409 TQGNRLTFCKGNIDELKGQLIKVEITEVRAFSLTGEAIV 447


>gi|253573611|ref|ZP_04850954.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Paenibacillus sp. oral
           taxon 786 str. D14]
 gi|251847139|gb|EES75144.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Paenibacillus sp. oral
           taxon 786 str. D14]
          Length = 532

 Score =  450 bits (1157), Expect = e-124,   Method: Composition-based stats.
 Identities = 178/461 (38%), Positives = 269/461 (58%), Gaps = 14/461 (3%)

Query: 11  AHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC 70
            + V + +    V + + V ++GCQMN +D+  ++ +    GY        AD+I+LNTC
Sbjct: 76  ENAVPEELKGIGVGKHYIVYTFGCQMNEHDTETIKGLLEQMGYRATEDRKVADIILLNTC 135

Query: 71  HIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVV 128
            IRE A +KV+  LG +++LK        DLL+ V GC++Q EG  + IL++   V+++ 
Sbjct: 136 AIRENAEDKVFGELGHLKSLKTE----KPDLLLGVCGCMSQEEGVVKRILQKHSFVDMIF 191

Query: 129 GPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
           G    +RLP L++ A F K +V   +S E       I++    ++ G+ A++ I  GCDK
Sbjct: 192 GTHNIHRLPYLIQEALFSKEMVVEVWSKEG-----DIIENLPKKREGMRAWVNIMYGCDK 246

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS 248
           FCT+C+VP+TRG E SR    V+ E R+L   G  EITLLGQNVNA  GK       TF+
Sbjct: 247 FCTYCIVPFTRGKERSRRPEDVIAEVRELARQGYKEITLLGQNVNA-YGKDFTDINYTFA 305

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
           +L+  + +I  + R+R+TTSHPRD  D LI        L+ ++HLPVQSGS  +LK M+R
Sbjct: 306 NLMDDIRQID-IPRVRFTTSHPRDFDDALIDVLAKGGNLVEHIHLPVQSGSSEVLKKMSR 364

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
           ++T   Y +++ +I++  P++ +++D IVGFPGET++ F  T+ LV ++GY  A++F YS
Sbjct: 365 KYTREHYLELVRKIKAKIPNVVLTTDIIVGFPGETEEQFEETLSLVREVGYDSAYTFIYS 424

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK- 427
           PR GTP + M + V   VK  RL+ L   L E   + N+A  GQI+EVL+E   K     
Sbjct: 425 PREGTPAAVMEDTVPMEVKKARLMKLNDTLNEFSRNSNEALRGQIVEVLVEGESKNNAHM 484

Query: 428 LVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           L GR+   + V        IG  ++V ITD     + G+LV
Sbjct: 485 LSGRTRTNKLVHFEGGTELIGTFVQVEITDPMTWYIKGKLV 525


>gi|182435525|ref|YP_001823244.1| hypothetical protein SGR_1732 [Streptomyces griseus subsp. griseus
           NBRC 13350]
 gi|229891007|sp|B1VXU5|MIAB_STRGG RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|178464041|dbj|BAG18561.1| conserved hypothetical protein [Streptomyces griseus subsp. griseus
           NBRC 13350]
          Length = 506

 Score =  450 bits (1157), Expect = e-124,   Method: Composition-based stats.
 Identities = 176/453 (38%), Positives = 260/453 (57%), Gaps = 20/453 (4%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDD--ADLIVLNTCHIREKAAEKV 80
           V + + V++YGCQMNV+DS R+  +    GY R     D  AD++V NTC +RE A  K+
Sbjct: 12  VQKSYEVRTYGCQMNVHDSERLSGLLEGAGYVRAPEGSDGDADVVVFNTCAVRENADNKL 71

Query: 81  YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140
           Y  LGR+  +K  R      + + V GC+AQ + + I++R+P V+VV G     +LP LL
Sbjct: 72  YGNLGRLAPMKTKR----PGMQIAVGGCLAQKDRDTIVKRAPWVDVVFGTHNIGKLPVLL 127

Query: 141 ERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           ERAR  +   ++   S+E     L        R+    A+++I  GC+  CTFC+VP  R
Sbjct: 128 ERARVQEEAQIEIAESLEAFPSTLPT-----RRESAYAAWVSISVGCNNTCTFCIVPALR 182

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G E  R    ++ E   L+  GVCEITLLGQNVNA  G  + G++  FS LL +   I+G
Sbjct: 183 GKEKDRRTGDILAEIEALVAEGVCEITLLGQNVNA-YGSDI-GDREAFSKLLRACGRIEG 240

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           L R+R+T+ HPRD +D +I A  +   +MP LH+P+QSGSD +LK+M R +    +  II
Sbjct: 241 LERVRFTSPHPRDFTDDVIAAMAETPNVMPQLHMPMQSGSDTVLKAMRRSYRQERFLGII 300

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
           +++R+  P+ AIS+D IVGFPGET++DF  TM  V +  +A AF+F+YS R GTP ++M 
Sbjct: 301 EKVRAAMPEAAISTDIIVGFPGETEEDFEQTMHAVREARFANAFTFQYSKRPGTPAADMD 360

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKG---KLVGRSPWL 435
            Q+ + V  ER + L     +     N   VG+ ++V++ E  G++ G   +L GR+P  
Sbjct: 361 GQIPKEVVQERYMRLSALQEQISWDENKKQVGRTLDVMVAEGEGRKDGATQRLSGRAPDN 420

Query: 436 QSVVL--NSKNHNIGDIIKVRITDVKISTLYGE 466
           + V      K    GD++ V IT      L  E
Sbjct: 421 RLVHFTQPEKAVRPGDVVTVEITYAAPHHLLAE 453


>gi|198274122|ref|ZP_03206654.1| hypothetical protein BACPLE_00259 [Bacteroides plebeius DSM 17135]
 gi|198273200|gb|EDY97469.1| hypothetical protein BACPLE_00259 [Bacteroides plebeius DSM 17135]
          Length = 457

 Score =  450 bits (1157), Expect = e-124,   Method: Composition-based stats.
 Identities = 162/447 (36%), Positives = 258/447 (57%), Gaps = 11/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F+++YGCQMNV DS  +  +    GY   +++++AD + +NTC IR+ A +K+ + L
Sbjct: 19  KKLFIETYGCQMNVADSEVIASIMQMAGYSPCDTLEEADAVFMNTCSIRDNAEQKILNRL 78

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
               +L+  R     +L+V V GC+A+    E++ +   V++V GP  Y  LP+L+    
Sbjct: 79  EFFHSLRKKRK----NLIVGVLGCMAERVKNELIEKH-HVDLVAGPDAYLTLPDLIAAVE 133

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G++ ++ + S  + +  +       N   G   F++I  GC+ FC +C+VPYTRG E S
Sbjct: 134 AGEKAINVELSTTETYRDVIPSRICGNHISG---FVSIMRGCNNFCHYCIVPYTRGRERS 190

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R +  +++E R L   G  E+TLLGQNVN++R +  DG+  TF  LL  ++E    +R+R
Sbjct: 191 RDVESILNEVRDLQRKGYKEVTLLGQNVNSYRFE-KDGQTVTFPMLLRIVAEAVPDMRVR 249

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +TTSHP+DMSD  +    ++  +  ++HLPVQSGS RILK MNR++T   Y + +  IR 
Sbjct: 250 FTTSHPKDMSDETLHVIAEVPNVCKHIHLPVQSGSSRILKLMNRKYTREWYLERVAAIRR 309

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN-MLEQVD 383
           + PD  +S+D   GF  ET++D + ++ L+ +  Y  AF FKYS R GT  S  + + V 
Sbjct: 310 IIPDCGLSTDIFSGFHSETEEDHQMSLSLMRECAYDSAFMFKYSERPGTYASKHLPDDVP 369

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRSPWLQSVVLNS 442
           E +K  RL  + +   +     N   VG+  EVL+E   K  K +L GR+   + VV + 
Sbjct: 370 EEIKIRRLNEMIELQNQLSAESNAKDVGKTFEVLVEGVSKRSKEQLFGRTEQNKVVVFDR 429

Query: 443 KNHNIGDIIKVRITDVKISTLYGELVV 469
            +H IGD +KV+IT+   +TL G  V 
Sbjct: 430 GSHRIGDFVKVKITESSSATLKGIEVT 456


>gi|254386091|ref|ZP_05001405.1| methylase of isopentenylated A37 derivatives in tRNA [Streptomyces
           sp. Mg1]
 gi|194344950|gb|EDX25916.1| methylase of isopentenylated A37 derivatives in tRNA [Streptomyces
           sp. Mg1]
          Length = 506

 Score =  450 bits (1157), Expect = e-124,   Method: Composition-based stats.
 Identities = 176/450 (39%), Positives = 257/450 (57%), Gaps = 20/450 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDD--ADLIVLNTCHIREKAAEKVYSF 83
            + V++YGCQMNV+DS R+  +    GY R     D  AD++V NTC +RE A  K+Y  
Sbjct: 16  TYEVRTYGCQMNVHDSERLSGLLEGAGYTRAPEGSDGDADVVVFNTCAVRENADNKLYGN 75

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR+  +K  R      + + V GC+AQ + + I++R+P V+VV G     +LP LLERA
Sbjct: 76  LGRLAPMKTKR----PGMQIAVGGCLAQKDRDTIVKRAPWVDVVFGTHNIGKLPVLLERA 131

Query: 144 RFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           R  +   V+   S+E     L        R+    A+++I  GC+  CTFC+VP  RG E
Sbjct: 132 RVQEEAQVEIAESLEAFPSTLPT-----RRESAYAAWVSISVGCNNTCTFCIVPALRGKE 186

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
             R    ++ E   L+  GV EITLLGQNVNA  G  L G++  FS LL +   I+GL R
Sbjct: 187 EDRRPGDILAEVEALVAEGVSEITLLGQNVNA-YGSDL-GDREAFSKLLRACGGIEGLER 244

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+T+ HPRD +D +I A  +   +MP LH+P+QSGSD IL++M R +    +  II+++
Sbjct: 245 VRFTSPHPRDFTDDVIAAMAETPNVMPQLHMPLQSGSDPILRAMRRSYRQERFLGIIEKV 304

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+  P  AIS+D IVGFPGET++DF+ TM  V +  +A AF+F+YS R GTP ++M  Q+
Sbjct: 305 RAAIPHAAISTDIIVGFPGETEEDFQQTMHTVREARFANAFTFQYSKRPGTPAADMEGQI 364

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKG---KLVGRSPWLQSV 438
            + V  +R + L     E     N   VG+ +EV++ E  G++ G   +L GR+P  + V
Sbjct: 365 PKEVVQDRYMRLVALQEEISWEENKKQVGRTLEVMVAEGEGRKDGATDRLSGRAPDNRLV 424

Query: 439 VL--NSKNHNIGDIIKVRITDVKISTLYGE 466
                 +    GD++ V IT      L  E
Sbjct: 425 HFTKPDEEVRPGDVVTVDITYAAPHHLLAE 454


>gi|15895113|ref|NP_348462.1| Fe-S oxidoreductase [Clostridium acetobutylicum ATCC 824]
 gi|81530267|sp|Q97I18|MIAB_CLOAB RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|15024813|gb|AAK79802.1|AE007692_10 Predicted Fe-S oxidoreductase, YMCB B.subtilis ortholog
           [Clostridium acetobutylicum ATCC 824]
 gi|325509252|gb|ADZ20888.1| Fe-S oxidoreductase [Clostridium acetobutylicum EA 2018]
          Length = 441

 Score =  449 bits (1156), Expect = e-124,   Method: Composition-based stats.
 Identities = 174/447 (38%), Positives = 264/447 (59%), Gaps = 13/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + FF++++GCQMN  DS ++  M     YE  ++ +DADLI+ NTC +RE A  KVY  L
Sbjct: 5   KLFFIETWGCQMNAEDSEKLAGMLKEMKYEATDNREDADLIIFNTCCVRENAELKVYGNL 64

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQA--EGEEILRRSPIVNVVVGPQTYYRLPELLER 142
           G ++ LK+       +L++ V GC+ Q     E I +R P V++V+G       P+ L++
Sbjct: 65  GTLKKLKDK----KPNLIITVCGCMMQQRDMAEHIKKRFPFVDIVMGTHNTQMFPQYLKK 120

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
               +  V   +  E+       +   Y+ K    AF+TI  GC+ FCT+C+VPY RG E
Sbjct: 121 VENERTSVVEIWDKEEGIVEGMPIYRSYDMK----AFVTIMYGCNNFCTYCIVPYVRGRE 176

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR    + +E ++L+  G  EITLLGQNVN+  GK LD E+  F+ LL  L+ I+GL+R
Sbjct: 177 RSRKPEDIENEIKELVKKGYKEITLLGQNVNS-YGKSLD-EEMNFALLLRRLNNIEGLLR 234

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+ TSHP+D++D +I A  D D +  ++HLPVQSGS  IL  MNR +T  +Y  ++++I
Sbjct: 235 IRFMTSHPKDLTDDVIAAIADCDKVCEHIHLPVQSGSTTILNKMNRNYTREDYINLVNKI 294

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           +S   ++AI++D IVGFPGET++DF  T+ LV ++ Y  AF+F YS R GTP +    Q+
Sbjct: 295 KSGIKNVAITTDIIVGFPGETEEDFEDTLSLVKEVEYDSAFTFLYSIREGTPAAKYENQI 354

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLVGRSPWLQSVVLN 441
            + VK +R   L + +       N    G+I+E+L+E   K  G KL+GR+   + V   
Sbjct: 355 PDEVKHKRFNKLLEAVNLISEKKNKEYEGKIVEILVEGKSKNDGSKLMGRTRTGKLVNFE 414

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
               +IG +I V+IT  +  +L GE V
Sbjct: 415 GLESSIGKLINVKITKAQAFSLVGEEV 441


>gi|150017413|ref|YP_001309667.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Clostridium beijerinckii
           NCIMB 8052]
 gi|229890483|sp|A6LWI1|MIAB_CLOB8 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|149903878|gb|ABR34711.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Clostridium beijerinckii
           NCIMB 8052]
          Length = 455

 Score =  449 bits (1156), Expect = e-124,   Method: Composition-based stats.
 Identities = 175/448 (39%), Positives = 264/448 (58%), Gaps = 15/448 (3%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
            + FF+++YGCQMN  DS ++  M    GYE   + D+A +I+ NTC +RE A  KV+  
Sbjct: 17  KKLFFIQTYGCQMNEEDSEKLSGMLKRMGYENTENRDEASIIIFNTCCVRENAENKVFGN 76

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLE 141
           LG ++  K        DL++ + GC+ Q +G  ++IL+R P VN++ G    Y+ PE L 
Sbjct: 77  LGALKKQKEK----NPDLVIGICGCMMQQKGMADDILKRFPYVNIIFGTHNSYKFPEYLN 132

Query: 142 RAR-FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           R +  G ++ +      +  E + I     +RK  +  F+TI  GC+ FCT+C+VPY RG
Sbjct: 133 RVKTEGVQIKEIIDKETEIVEGIPI-----DRKSDIKGFVTIMYGCNNFCTYCIVPYVRG 187

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E SR    +V+E + ++  G  E+TLLGQNVN+  GKGL+ E  TF+DLL  ++EI+GL
Sbjct: 188 RERSRKPEDIVNEIKDMVTRGYKEVTLLGQNVNS-YGKGLE-ENITFADLLRKVNEIEGL 245

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+ TSHP+D++  ++ A  D D +   +HLPVQSGSDRILK MNR +T  +Y  +  
Sbjct: 246 ERIRFMTSHPKDLTLDVVYAIRDCDKVCEQIHLPVQSGSDRILKEMNRHYTKEQYITLAK 305

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           +IR+  PD+  S+D IVGFPGET++DF  T++L  ++ Y  AF+F YS R  TP   M  
Sbjct: 306 KIRAEIPDVTFSTDIIVGFPGETEEDFSETLELAKEVRYDAAFTFIYSRRNHTPADKMEN 365

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVV 439
           Q+ + +K ER   L + +       N    G+I EVL+E + K ++ KL GR+   + V 
Sbjct: 366 QIPDEIKHERFNRLVEIVNTGIAKGNKDAEGKIYEVLVEGYSKNDEAKLTGRTRNGRLVN 425

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGEL 467
                  IG ++ V+I      +L GE+
Sbjct: 426 FEGGEDLIGKLVNVKIIKANSFSLIGEV 453


>gi|56963955|ref|YP_175686.1| 2-methylthioadenine synthetase [Bacillus clausii KSM-K16]
 gi|81366024|sp|Q5WFY0|MIAB_BACSK RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|56910198|dbj|BAD64725.1| 2-methylthioadenine synthetase [Bacillus clausii KSM-K16]
          Length = 520

 Score =  449 bits (1156), Expect = e-124,   Method: Composition-based stats.
 Identities = 171/467 (36%), Positives = 268/467 (57%), Gaps = 14/467 (2%)

Query: 5   IKLIGVAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADL 64
           ++++   +++ + V      ++F +++YGCQMNV+DS  M  +    G+E     ++AD+
Sbjct: 57  VQVLRPENLIPEEVANLGAGKKFLIRTYGCQMNVHDSENMSGLLLGMGFEETTETEEADI 116

Query: 65  IVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSP 122
           I+LNTC IRE A  KV+  +G ++ LK        +L++ V GC++Q E    +I+ +  
Sbjct: 117 ILLNTCAIRENAENKVFGEIGNLKPLKLE----KPELIIGVCGCMSQEESVVGKIMEKHQ 172

Query: 123 IVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTI 182
            ++++ G    +RLP LL  A FGK +V   +S E       + +   +RK    A++ I
Sbjct: 173 HIDLIFGTHNIHRLPHLLRDAIFGKEMVIEVWSKEGDI----VENMPRSRKNKTQAWVNI 228

Query: 183 QEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG 242
             GCDKFCT+C+VPYTRG E SR    ++ E R L   G  EITLLGQNVNA  GK L G
Sbjct: 229 MYGCDKFCTYCIVPYTRGKERSRLPEDIIAEVRDLARQGYKEITLLGQNVNA-YGKDLPG 287

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
                 DL+  + +I  + R+R+TTSHPRD  D LI+       L+ ++HLPVQ G+  I
Sbjct: 288 S-YRLGDLMNEIHKID-IPRVRFTTSHPRDFDDHLIEVLAQGGNLVEHIHLPVQHGNSDI 345

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           LK M R++T  +Y  + ++I+   P+ + ++D IVGFP ET++ F+  + LV++I +  A
Sbjct: 346 LKLMGRKYTREQYITLANKIKQAIPNASFTTDLIVGFPNETEEQFQDMLSLVEEIQFDAA 405

Query: 363 FSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422
           +++ YSPR GTP + M + V  +VK ERL  L   + +     N     +I+EVL+E   
Sbjct: 406 YTYIYSPREGTPAARMEDNVPMSVKKERLARLNALVNDISNKRNLDYQDKIVEVLVEGES 465

Query: 423 KEK-GKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           K+    L GR+   + V        IG+I+ V+IT+ K  +L GE+V
Sbjct: 466 KKNTDVLAGRTRTNRLVNFVGPKSAIGEIVYVKITEAKTWSLDGEIV 512


>gi|251797360|ref|YP_003012091.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Paenibacillus
           sp. JDR-2]
 gi|247544986|gb|ACT02005.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Paenibacillus sp. JDR-2]
          Length = 525

 Score =  449 bits (1156), Expect = e-124,   Method: Composition-based stats.
 Identities = 179/454 (39%), Positives = 268/454 (59%), Gaps = 15/454 (3%)

Query: 20  QCIVPQRFF-VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAE 78
           Q I   +F+ +++YGCQMN +D+  M+ MF   GY   +    AD+I+LNTC IRE A +
Sbjct: 76  QTIGKGKFYLIQTYGCQMNEHDTEVMKGMFEEMGYTGTDDRLQADVILLNTCAIRENAED 135

Query: 79  KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRL 136
           KV+  LG ++ LK        +LL+ V GC++Q E    +IL++   V+++ G    +RL
Sbjct: 136 KVFGELGHLKTLKLQ----KPELLLGVCGCMSQEESVVGKILQKHAFVDMIFGTHNIHRL 191

Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
           P LL+ A F K +V   +S E       I++    ++ G+ A++ I  GCDKFCT+C+VP
Sbjct: 192 PHLLQNAYFSKEMVVEVWSKEG-----DIIENMPKKRDGMRAWVNIMYGCDKFCTYCIVP 246

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256
           YTRG E SR    V+ E R+L   G  EITLLGQNVNA  GK  +     F DL++ +S+
Sbjct: 247 YTRGKERSRRPEDVIAEVRELARQGFKEITLLGQNVNA-YGKDFEDISYRFGDLMHDISK 305

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           I  + R+R+TTSHPRD  D LI+       L+ ++HLP+QSGS  +LK M+R+++  +  
Sbjct: 306 ID-IPRIRFTTSHPRDFDDHLIEVLAQGGNLVEHIHLPIQSGSTEVLKRMSRKYSREQIF 364

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
           ++  +I+   P++++S+D IVGFPGETD+ F  TM LV +IG+  A++F YSPR GTP +
Sbjct: 365 ELAAKIKRAIPNVSLSTDIIVGFPGETDEQFEDTMTLVRQIGFDFAYTFIYSPREGTPAA 424

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWL 435
            M + V   +K +RL  L + + E     N+   G+I+EVL+E   K     L GR+   
Sbjct: 425 GMEDNVPMELKKKRLKRLNELMAELGRRGNERMEGEIVEVLVEGESKNNPNILAGRTRTN 484

Query: 436 QSVVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
           + V L      IG  I VR+T+ K   +  E + 
Sbjct: 485 KLVHLEGPKEWIGQFIHVRVTEAKTWYIKAEPLA 518


>gi|119477442|ref|ZP_01617633.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [marine gamma
           proteobacterium HTCC2143]
 gi|119449368|gb|EAW30607.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [marine gamma
           proteobacterium HTCC2143]
          Length = 465

 Score =  449 bits (1156), Expect = e-124,   Method: Composition-based stats.
 Identities = 200/448 (44%), Positives = 292/448 (65%), Gaps = 13/448 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ ++K++GCQMN YDS R++D+   S G E  ++ D+AD+++LNTC IREKA EKV+  
Sbjct: 27  KKLYIKTHGCQMNEYDSDRLQDLLGTSHGLETTDNPDEADVLLLNTCSIREKAQEKVFHQ 86

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR R LK +      DL++ V GCVA  EG+ I +R+P V+VV GPQT +R+PE++  +
Sbjct: 87  LGRWRQLKEA----NPDLIIGVGGCVASQEGDAIGKRAPFVDVVFGPQTLHRVPEMINAS 142

Query: 144 RF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           +  G  +VD  +   +KF+ L           G +AF++I EGC K+CTFCVVPYTRG E
Sbjct: 143 KPDGPVLVDVTFPEIEKFDALP-----EPSSDGPSAFVSIMEGCSKYCTFCVVPYTRGEE 197

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR    V+ E   L   GV E+ LLGQNVNA+RG+  + E   F++LL+ ++ + G+ R
Sbjct: 198 VSRPFDDVIAEIAHLTSQGVKEVNLLGQNVNAYRGENHEAEIVEFAELLHFVAAVPGIER 257

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +RYTTSHP + SD LI+A+ D+  L+ +LHLPVQSGSDRIL +M R HT  EY + + R+
Sbjct: 258 IRYTTSHPVEFSDALIEAYADIPELVSHLHLPVQSGSDRILAAMKRGHTRAEYIEKMSRL 317

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           + +RPDI+ SSDFI+GFPGET+ DF+ TM L+ +IG+  +FSF YS R GTP + + ++ 
Sbjct: 318 KDIRPDISFSSDFIIGFPGETEQDFQDTMALITEIGFDTSFSFIYSARPGTPAAELDDET 377

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLN 441
            E VK +RL  LQ+++ +Q    +   VG   ++LI     K++ +L GR+   + V   
Sbjct: 378 PETVKKQRLKLLQQQINQQAQLISRQMVGNTEKILITGVSRKDEKELQGRTENNRVVNFP 437

Query: 442 SKN-HNIGDIIKVRITDVKISTLYGELV 468
           S N   IG    V IT+   ++L G+LV
Sbjct: 438 STNQSLIGSFSFVTITEALPNSLRGQLV 465


>gi|86143888|ref|ZP_01062256.1| hypothetical protein MED217_03540 [Leeuwenhoekiella blandensis
           MED217]
 gi|85829595|gb|EAQ48058.1| hypothetical protein MED217_03540 [Leeuwenhoekiella blandensis
           MED217]
          Length = 481

 Score =  449 bits (1156), Expect = e-124,   Method: Composition-based stats.
 Identities = 177/464 (38%), Positives = 261/464 (56%), Gaps = 22/464 (4%)

Query: 20  QCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEK 79
           Q    ++ F++SYGCQMN  DS  +  +   +GY     ++DADL+++NTC IR+KA + 
Sbjct: 19  QAANSKKLFIESYGCQMNFSDSEIVASILAKEGYNTTQQLEDADLVLVNTCSIRDKAEQT 78

Query: 80  VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL 139
           V   L +   +K    K+   + V V GC+A+    + L    IV++VVGP  Y  LP L
Sbjct: 79  VRKRLEKYNAVK----KDNPTMKVGVLGCMAERLKSKFLEEEKIVDLVVGPDAYKDLPNL 134

Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           L     G+  ++   S E+ +  ++ V        GVTAF++I  GCD  CTFCVVP+TR
Sbjct: 135 LGEVEEGRDAINVILSKEETYGDIAPVRLQ---SNGVTAFVSITRGCDNMCTFCVVPFTR 191

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA--WRGKGL--DGEKCT--------- 246
           G E SR    +V+E   L   G  E+TLLGQNV++  W G GL  D EK +         
Sbjct: 192 GRERSRDPQSIVEEVNDLAAKGFKEVTLLGQNVDSYLWYGGGLKKDFEKASDMAKATAVN 251

Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306
           F+ LL  ++E +  +R+R++TS+P+DM+  +I+       +  Y+HLPVQSGSDRILK M
Sbjct: 252 FAGLLSLVAEAQPKMRIRFSTSNPQDMTLDVIRTMAKYPNICKYIHLPVQSGSDRILKEM 311

Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
           NR HT  EY ++ID IR + PD AIS D I GFP ET++D + T+ L++ + Y   F F 
Sbjct: 312 NRLHTRQEYFELIDNIREIMPDCAISQDMITGFPTETEEDHQDTLSLMEYVKYDFGFMFA 371

Query: 367 YSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK 425
           YS R GT  +  + + +  +VK  RL  +    +E  +      VG+ +EVLIEK  K+ 
Sbjct: 372 YSERPGTLAARKLEDDIPLDVKKRRLAEVIALQQEHSLYNTQKQVGKTVEVLIEKASKKS 431

Query: 426 G-KLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
             +  GR+     VV   +++ +GD + V I D   +TL G+ V
Sbjct: 432 DAEWAGRNSQNTVVVFPKEHYKVGDFVNVEILDCTSTTLLGKAV 475


>gi|242373585|ref|ZP_04819159.1| 2-methylthioadenine synthetase [Staphylococcus epidermidis
           M23864:W1]
 gi|242348948|gb|EES40550.1| 2-methylthioadenine synthetase [Staphylococcus epidermidis
           M23864:W1]
          Length = 514

 Score =  449 bits (1155), Expect = e-124,   Method: Composition-based stats.
 Identities = 171/448 (38%), Positives = 265/448 (59%), Gaps = 15/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + F +K+YGCQMN +D+  M  +  + GY   + ++ AD+I++NTC IRE A  KV+S +
Sbjct: 68  RTFLIKTYGCQMNAHDTEVMAGILKALGYSATSDINQADVILINTCAIRENAENKVFSEI 127

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G +++LK    KE  + L+ V GC++Q E    +IL+    V+++ G    + LPE+LE 
Sbjct: 128 GNLKHLK----KERPECLIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHHLPEILEE 183

Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           A   K +V   +S E D  E L  V     R+  + A++ I  GCDKFCT+C+VP+TRG 
Sbjct: 184 AYLSKAMVVEVWSKEGDVIENLPKV-----REGSIKAWVNIMYGCDKFCTYCIVPFTRGK 238

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR    +++E R+L   G  EITLLGQNVN+  GK ++G      DLL  +S+I  + 
Sbjct: 239 ERSRRPEDIINEVRELAREGYQEITLLGQNVNS-YGKDIEGLDYGLGDLLEDISKID-IP 296

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHP D +D +I+   +   ++P++HLPVQSG++ +LK M R++T   Y  ++ R
Sbjct: 297 RVRFTTSHPWDFTDRMIEVIANGGNIVPHIHLPVQSGNNAVLKIMGRKYTRESYLDLVSR 356

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I++  PDIA+++D IVG+P ET++ F  T+ L D++ +  A+++ YS R GTP + M + 
Sbjct: 357 IKNAIPDIALTTDIIVGYPNETEEQFEETLSLYDEVEFEHAYTYLYSQRDGTPAAKMKDN 416

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440
           V   VK ERL  L KK+ E          G+I+ VL E   K+    L G +   + V  
Sbjct: 417 VPTEVKKERLQRLNKKVGEYSQKAMSQYEGEIVTVLCEGSSKKDDTVLAGYTAKNKLVNF 476

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
            +    IG ++ V+I + K  +L G  V
Sbjct: 477 KAPKEMIGKLVDVKIDEAKQYSLNGTFV 504


>gi|212692499|ref|ZP_03300627.1| hypothetical protein BACDOR_01995 [Bacteroides dorei DSM 17855]
 gi|212664974|gb|EEB25546.1| hypothetical protein BACDOR_01995 [Bacteroides dorei DSM 17855]
          Length = 456

 Score =  449 bits (1155), Expect = e-124,   Method: Composition-based stats.
 Identities = 162/446 (36%), Positives = 259/446 (58%), Gaps = 10/446 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F+++YGCQMNV DS  +  +    GY    ++D+AD + +NTC IR+ A +K+ + L
Sbjct: 18  KKLFIETYGCQMNVADSEVIASIMQMAGYHVCETLDEADAVFMNTCSIRDNAEQKILNRL 77

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
               ++K ++ +   +L+V V GC+A+   ++++     V++VVGP  Y  LP+L+    
Sbjct: 78  EFFHSMKKNKRR---NLIVGVLGCMAERVKDDLIENH-HVDLVVGPDAYLTLPDLVASVE 133

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G++ ++ + S  + +  +       N   G   F++I  GC+ FC +C+VPYTRG E S
Sbjct: 134 AGEKAINVELSTTETYREVIPSRICGNHISG---FVSIMRGCNNFCHYCIVPYTRGRERS 190

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R +  +++E R L   G  E+TLLGQNVN++R +  +GE  TF  LL +++E    +R+R
Sbjct: 191 RDVESILNEVRDLAAKGYKEVTLLGQNVNSYRFE-KEGEIITFPMLLRTVAEAVPDMRVR 249

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +TTSHP+DMSD  ++   +   +  ++HLPVQSGS RILK MNR++T   Y + +  IR 
Sbjct: 250 FTTSHPKDMSDETLQVIVETPNVCKHIHLPVQSGSSRILKLMNRKYTREWYLERVAAIRR 309

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN-MLEQVD 383
           + PD  +S+D   G+  ET++D + ++ L+ +  Y  AF FKYS R GT  S  + + V 
Sbjct: 310 IIPDCGLSTDIFSGYHSETEEDHQESLSLMRECAYDSAFMFKYSERPGTYASKHLPDDVP 369

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNS 442
           E VK  RL  + +         N   VG+  EV++E   K    +L GR+   + VV + 
Sbjct: 370 EEVKIRRLNEIIELQNRLSAESNARDVGKTFEVMVEGVSKRSREQLFGRTQQNKVVVFDR 429

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
            NH IGD + VRIT+   +TL GE V
Sbjct: 430 GNHRIGDFVHVRITEASSATLKGEEV 455


>gi|330997206|ref|ZP_08321059.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Paraprevotella
           xylaniphila YIT 11841]
 gi|329571001|gb|EGG52708.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Paraprevotella
           xylaniphila YIT 11841]
          Length = 441

 Score =  449 bits (1154), Expect = e-124,   Method: Composition-based stats.
 Identities = 165/446 (36%), Positives = 258/446 (57%), Gaps = 10/446 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F+++YGCQMNV DS  +  +    GYE   ++D+AD + LNTC +R+ A +K+ + L
Sbjct: 2   KKLFIETYGCQMNVADSEVVASVMRMAGYETCETLDEADAVFLNTCSVRDNAEQKIINRL 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             +  L+      G  L++ V GC+A+   EE++     V++V GP  Y  LP+L+ +  
Sbjct: 62  EALHALRRK----GRHLVIGVLGCMAERVKEELIENH-HVDLVAGPDAYLSLPDLIAQVE 116

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G + ++ + SV + +  +       +   G   F++I  GC+ FC +C+VPYTRG E S
Sbjct: 117 LGHKAINVELSVTETYRDVIPQRVCGSHISG---FVSIMRGCNNFCHYCIVPYTRGRERS 173

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R +  +++E R L   G  E+TLLGQNVN++   G DG+  +F  LL  ++     +R+R
Sbjct: 174 RDVESILNEVRDLKKRGYKEVTLLGQNVNSYLHVGGDGKTVSFPQLLRLVAHEADGMRVR 233

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +TTSHP+DMSD  ++   +   +  ++HLPVQSGSDRILK MNR++T   Y   +  IR 
Sbjct: 234 FTTSHPKDMSDDTLRVIAEEPNVCRHIHLPVQSGSDRILKLMNRKYTREWYLDRVAAIRR 293

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN-MLEQVD 383
           + PD  +S+D   G+  ET++D + ++ L+ +  Y  AF FKYS R GT  S  + + V 
Sbjct: 294 IVPDCGLSTDIFSGYCSETEEDHQMSLSLMRECAYDSAFMFKYSERPGTYASKHLPDDVP 353

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRSPWLQSVVLNS 442
           E+VK  RL  L     E     N  C G++ EVL+E   K  K +L GR+   + VV + 
Sbjct: 354 EDVKVRRLNELIALQNELSAESNRHCEGRVYEVLVEGVSKRSKEQLFGRTEQNKVVVFDR 413

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
             H++GD +KVRI+    +TL GE+V
Sbjct: 414 GKHHVGDFVKVRISGSSSATLKGEVV 439


>gi|310828246|ref|YP_003960603.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Eubacterium limosum
           KIST612]
 gi|308739980|gb|ADO37640.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Eubacterium limosum
           KIST612]
          Length = 439

 Score =  449 bits (1154), Expect = e-124,   Method: Composition-based stats.
 Identities = 162/447 (36%), Positives = 265/447 (59%), Gaps = 15/447 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + + + + ++GCQMN  DS ++  +  + GY     ++ A +++LNTC +RE A  +V+ 
Sbjct: 1   MNKTYKIMTFGCQMNENDSEKISGLLKNMGYTPEEDVNKAGVVILNTCSVRENADVRVFG 60

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELL 140
            LG  +++K    K   DL++ V GC+ Q     ++I  + P V++V G    ++ P++L
Sbjct: 61  NLGTFKSVK----KVNPDLVLAVCGCMMQQPEIVKKIKEKYPQVDLVFGTHNIHQFPQML 116

Query: 141 ERARF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
                 G+R+ +      +  E L +     +RK    +F+TI  GC+ FCT+C+VPYTR
Sbjct: 117 GNYLQRGERIFEIWDDSHEIIEDLPV-----DRKYPFKSFVTIMNGCNNFCTYCIVPYTR 171

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G E+SR   ++++E  +L D G  E+TLLGQNVN+  G  L      F+DLL  L++I+ 
Sbjct: 172 GREVSRQPEKIIEEVTRLADEGCLEVTLLGQNVNS-YGNDLKTG-YHFADLLRDLNQIEK 229

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           + R+R+ TSHP+D++D +I+A    D + P +HL +QSGS R+LK+MNRR+T  +   ++
Sbjct: 230 IKRIRFMTSHPKDLTDEVIEAIAQCDKVCPAIHLAIQSGSTRVLKAMNRRYTKEQIIDLV 289

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
           D++RS  PD+AI++D IVGFPGET++DF+ T++++    +  AFSF YS R GTP + M 
Sbjct: 290 DKVRSRIPDVAITTDIIVGFPGETEEDFQDTLEVMRACKFDSAFSFIYSIRTGTPAATME 349

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSV 438
            Q+ + +K +RL  L   LR+     N    G+++ VL+E+  K    +L GR+   + V
Sbjct: 350 NQIPDEIKHDRLNRLLDVLRDISFGLNSKYEGRVLPVLVEEPSKNNSDRLSGRTETGKLV 409

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYG 465
                  NIG I+ V+IT     +L G
Sbjct: 410 NFEGSFENIGKIVNVKITKAGSFSLTG 436


>gi|219681792|ref|YP_002468178.1| isopentenyl-adenosine A37 tRNA methylthiolase MiaB (YleA) [Buchnera
           aphidicola str. 5A (Acyrthosiphon pisum)]
 gi|257471494|ref|ZP_05635493.1| isopentenyl-adenosine A37 tRNA methylthiolase MiaB (YleA) [Buchnera
           aphidicola str. LSR1 (Acyrthosiphon pisum)]
 gi|219624635|gb|ACL30790.1| isopentenyl-adenosine A37 tRNA methylthiolase MiaB (YleA) [Buchnera
           aphidicola str. 5A (Acyrthosiphon pisum)]
          Length = 439

 Score =  449 bits (1154), Expect = e-124,   Method: Composition-based stats.
 Identities = 180/446 (40%), Positives = 274/446 (61%), Gaps = 12/446 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQG-YERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           +  ++K++GCQMN YDS  +  +      Y    S ++AD+++LNTC IREKA EKV+  
Sbjct: 2   KYIYIKTWGCQMNEYDSSMIITLLEKNNQYSLTKSAENADILILNTCSIREKAQEKVFHQ 61

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + +KN+       +++ V GCVA  EG+EI +R+  V+++ G QT +RLP++++  
Sbjct: 62  LGRWKKIKNN----NPKVIIAVGGCVATQEGKEIFKRANYVDIIFGTQTLHRLPKMIDEV 117

Query: 144 RFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
              +++ +D  +   +KF+          +K+G TA ++I EGC+K+C+FCVVPYTRG E
Sbjct: 118 EKKRKLSIDISFPKLEKFKYFL-----APKKKGYTADISIMEGCNKYCSFCVVPYTRGNE 172

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           ISR    V+ E   L   G+ EI LLGQNVNA++G   +G+ C FS+L+  ++EI G+ R
Sbjct: 173 ISRPCDDVLFEISLLAKQGIKEINLLGQNVNAYQGPTFNGKVCYFSELIRLVAEIDGIER 232

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTS+P + +D +I+ + D   L+ +LHLPVQSGS++IL  M R +T  +Y  II ++
Sbjct: 233 IRFTTSNPLEFTDDIIEVYKDTPKLVSFLHLPVQSGSNKILNLMKRSYTTEDYTSIIKKL 292

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
              RPDI ISSDFIVGFPGE++ DF  T++ +  I +  +FSF YS R GTP SNM + +
Sbjct: 293 TIARPDIQISSDFIVGFPGESEIDFEKTIEFIKNINFDMSFSFIYSARPGTPASNMNDDL 352

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441
           D   K  RL  LQ+++  Q + ++    G I  VL+E    +    L GR+   + V   
Sbjct: 353 DLKEKKRRLYILQERINIQTMLWSRKMFGSIQSVLVEGVSDKNIMDLYGRTENNRVVTFQ 412

Query: 442 SKNHNIGDIIKVRITDVKISTLYGEL 467
             +  IG  + V+I  V   +L GEL
Sbjct: 413 GSSEMIGQFVNVKIKKVHTHSLKGEL 438


>gi|28210988|ref|NP_781932.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Clostridium
           tetani E88]
 gi|75542486|sp|Q895H1|MIAB_CLOTE RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|28203427|gb|AAO35869.1| miaB protein [Clostridium tetani E88]
          Length = 453

 Score =  449 bits (1154), Expect = e-124,   Method: Composition-based stats.
 Identities = 180/447 (40%), Positives = 278/447 (62%), Gaps = 15/447 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
            FF++++GCQMN  DS ++  M  + GY+     + AD+I+ NTC +RE A  KVY  LG
Sbjct: 18  TFFIETWGCQMNEEDSEKLSGMLKNIGYKNAEDKNQADIIIFNTCCVRENAELKVYGNLG 77

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERA 143
            ++ LK+       +L++ V GC+ Q EG  E I+++ P V+++ G    Y+ PE L RA
Sbjct: 78  ALKGLKSK----NPNLIIAVCGCMMQQEGMAEAIIKKYPFVDIIFGTHNSYKFPEYLNRA 133

Query: 144 R-FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           +  GK +++     E+  E + +     +RK    AF+TI  GC+ FCT+C+VPY RG E
Sbjct: 134 KQEGKSIIEVWDKEEEIVEGIPV-----DRKSSTKAFVTIMYGCNNFCTYCIVPYVRGRE 188

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR +S +  E ++L+ +G  EITLLGQNVN+  GK L+  K +F++LL  ++EI+G+ R
Sbjct: 189 RSREVSDIEKEIKELVKSGYKEITLLGQNVNS-YGKDLEP-KVSFAELLRHVNEIEGIER 246

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+ TSHP+D+++ +I A  + D L  ++HLPVQSGS RILK MNR +   +Y  ++++I
Sbjct: 247 VRFMTSHPKDLTEDVIYAIKECDKLCNHIHLPVQSGSSRILKKMNRYYNREDYLNLVNKI 306

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           +   P++AI++D IVGFPGET++DF  T++LV ++ Y  AF+F YS R GTP  ++ EQV
Sbjct: 307 KEEIPNVAITTDIIVGFPGETEEDFNETLELVKEVEYDSAFTFLYSKRKGTPAYDIEEQV 366

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVLN 441
            E+VK +R   L + + +     N     +I++VL+E   K +K KL GR+   + V   
Sbjct: 367 PEDVKHDRFKKLVEVVNKSCEKNNKKYQDRIVKVLVEGESKNDKNKLSGRTDTAKLVNFI 426

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
               NIG I+ V+IT     +L GE V
Sbjct: 427 GNKDNIGKIVDVKITKTLSFSLEGEEV 453


>gi|27467889|ref|NP_764526.1| hypothetical protein SE0971 [Staphylococcus epidermidis ATCC 12228]
 gi|57866805|ref|YP_188442.1| tRNA-i(6)A37 modification enzyme MiaB [Staphylococcus epidermidis
           RP62A]
 gi|251810724|ref|ZP_04825197.1| 2-methylthioadenine synthetase [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|282876275|ref|ZP_06285142.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus
           epidermidis SK135]
 gi|293366743|ref|ZP_06613419.1| tRNA-I(6)A37 modification enzyme MiaB [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|81674874|sp|Q5HPP8|MIAB_STAEQ RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|81843816|sp|Q8CSS3|MIAB_STAES RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|27315434|gb|AAO04568.1|AE016747_65 conserved hypothetical protein [Staphylococcus epidermidis ATCC
           12228]
 gi|57637463|gb|AAW54251.1| tRNA-i(6)A37 modification enzyme MiaB [Staphylococcus epidermidis
           RP62A]
 gi|251805884|gb|EES58541.1| 2-methylthioadenine synthetase [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|281295300|gb|EFA87827.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus
           epidermidis SK135]
 gi|291319044|gb|EFE59414.1| tRNA-I(6)A37 modification enzyme MiaB [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|329728030|gb|EGG64474.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
           epidermidis VCU144]
 gi|329736630|gb|EGG72896.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
           epidermidis VCU045]
          Length = 514

 Score =  449 bits (1154), Expect = e-124,   Method: Composition-based stats.
 Identities = 170/448 (37%), Positives = 264/448 (58%), Gaps = 15/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + F +K+YGCQMN +D+  M  +  + GY   + +++AD+I++NTC IRE A  KV+S +
Sbjct: 68  RTFLIKTYGCQMNAHDTEVMAGILNALGYSATSDINEADVILINTCAIRENAENKVFSEI 127

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G +++LK    KE  D L+ V GC++Q E    +IL+    V++V G    + LPE+LE 
Sbjct: 128 GNLKHLK----KERPDCLIGVCGCMSQEESVVNKILKSYQNVDMVFGTHNIHHLPEILEE 183

Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           A   K +V   +S E D  E L  V  G+     + A++ I  GCDKFCT+C+VP+TRG 
Sbjct: 184 AYLSKAMVVEVWSKEGDIIENLPKVRDGH-----IKAWVNIMYGCDKFCTYCIVPFTRGK 238

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR    ++DE R+L   G  EITLLGQNVN+  GK ++G      DLL  +S+I  + 
Sbjct: 239 ERSRRPEDIIDEVRELAREGYQEITLLGQNVNS-YGKDIEGLDYELGDLLEDISKID-IP 296

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHP D +D +I+       ++P++HLPVQSG++++LK M R++T   Y  ++ R
Sbjct: 297 RVRFTTSHPWDFTDRMIEVIAKGGNIVPHIHLPVQSGNNQVLKIMGRKYTRESYLDLVSR 356

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I+   P++A+++D IVG+P ET++ F  T+ L D + +  A+++ YS R GTP + M + 
Sbjct: 357 IKEAIPNVALTTDIIVGYPNETEEQFEETLSLYDDVQFEHAYTYLYSQRDGTPAAKMKDN 416

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVL 440
           V   VK ERL  L KK+            G+I+ VL E    K++  L G +   + V  
Sbjct: 417 VPLEVKKERLQRLNKKVGIYSQQAMSQYEGKIVTVLCEGSSKKDENVLAGYTDKNKLVNF 476

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                +IG ++ V+I + K  +L G  +
Sbjct: 477 KGPRESIGKLVDVKIDEAKQYSLNGTFI 504


>gi|50086159|ref|YP_047669.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Acinetobacter
           sp. ADP1]
 gi|81392304|sp|Q6F7W8|MIAB_ACIAD RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|49532135|emb|CAG69847.1| putative tRNA-i(6)A37 modification enzyme (MiaB) [Acinetobacter sp.
           ADP1]
          Length = 483

 Score =  449 bits (1154), Expect = e-124,   Method: Composition-based stats.
 Identities = 196/471 (41%), Positives = 285/471 (60%), Gaps = 22/471 (4%)

Query: 9   GVAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVL 67
              +      D  I  ++ ++++ GCQMN YDS RM D+   S GY       +AD++++
Sbjct: 17  NTVNQPVHTSDVSI--KKLYIETQGCQMNEYDSHRMADLLGDSHGYVLTTDPKEADILLM 74

Query: 68  NTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVV 127
           NTC IREKA EKV+S LGR R LK        DL++ V GCVA  EG+ I +R+P V++V
Sbjct: 75  NTCSIREKAQEKVFSELGRWRKLKQQ----NPDLIIGVGGCVASQEGDNIQKRAPYVDMV 130

Query: 128 VGPQTYYRLPELLERA--------RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAF 179
            GPQT +RLP++L++         +   ++VD  +   +KF+ L        R  G  AF
Sbjct: 131 FGPQTLHRLPQMLDQHQDQIEKPKKDKIKLVDISFPDIEKFDFLP-----EPRVEGFKAF 185

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
           ++I EGC K+C+FCVVPYTRG E+SR L  V+ E   L + GV EI+LLGQNVN +RG+ 
Sbjct: 186 VSIMEGCSKYCSFCVVPYTRGEEVSRPLDDVLAEIAGLAEKGVREISLLGQNVNGYRGET 245

Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
            +G  CTF +LL  +SEI G+ RLRYTTSHP + S+ LI+ + DL  ++ +LHLPVQSGS
Sbjct: 246 FEGGICTFPELLRLVSEIPGIGRLRYTTSHPLEFSEELIQCYRDLPQMVSHLHLPVQSGS 305

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
           + +L++M R HT   Y + I ++R +RPD+ +SSDFI+GFPGET+ +F  T   +  + +
Sbjct: 306 NAVLQAMKRNHTIDVYIEKIAKLRKIRPDMHLSSDFIIGFPGETEQNFEETYQFIKDLDF 365

Query: 360 AQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419
             ++SF YS R GTP S + +   E VK ERL  +Q  +++  +   DA  G I  VLIE
Sbjct: 366 DHSYSFIYSKRPGTPASELEDTTSEAVKKERLAKVQHWIKQSSIRKTDAMQGTIQRVLIE 425

Query: 420 KHG-KEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKI-STLYGELV 468
               K+   LVG +   + V        +G   ++ IT++K  + +YGEL+
Sbjct: 426 NVSEKDPNLLVGTADNTRLVTFVGDPMWVGRFAEIEITEIKTLNLVYGELL 476


>gi|86609143|ref|YP_477905.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Synechococcus
           sp. JA-2-3B'a(2-13)]
 gi|123502140|sp|Q2JKY0|MIAB_SYNJB RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|86557685|gb|ABD02642.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 444

 Score =  449 bits (1154), Expect = e-124,   Method: Composition-based stats.
 Identities = 169/450 (37%), Positives = 257/450 (57%), Gaps = 14/450 (3%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           +    ++  ++GCQMN  D+ RM  +  S GY        ADL++ NTC IR+ A +KVY
Sbjct: 1   MAAPTYYTITFGCQMNRADTERMAGILESLGYVATEDELQADLVLYNTCTIRDNAEQKVY 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S+LG    ++  R ++   + ++VAGCVAQ EGE++LRR P +++V+GPQ   RL +LL 
Sbjct: 61  SYLG----IQAQRKRKNPAIKLIVAGCVAQQEGEKLLRRVPELDLVMGPQYVNRLGDLLA 116

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           +   G +VV TD    +  E ++       R   VTA++ +  GC++ CT+C+VP  RG 
Sbjct: 117 QVEAGNQVVATD--PVEIPEDITKPR----RDSQVTAWINVIYGCNERCTYCIVPRVRGQ 170

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR    +  E   +   G  E+TLLGQN++A  G+ LD  K   + LL  +  ++G+ 
Sbjct: 171 EQSRQPQAIRAEIEDVARAGYREVTLLGQNIDA-YGRDLDP-KTNLASLLRFVHSVEGIE 228

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+ TSHPR  ++ LI    +L  +  + H+P Q+GS+ +LK M R +T   YRQII  
Sbjct: 229 RIRFATSHPRYFTEELITTCAELPKVCEHFHIPFQAGSNEVLKRMRRGYTHERYRQIIQL 288

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           IR   P+ AIS+D IVGFPGET+  F+ T+ LV  IG+ Q  +  YSPR GTP +   +Q
Sbjct: 289 IRQYMPEAAISADAIVGFPGETEAQFQETLQLVQDIGFDQVNTAAYSPRPGTPAAEWPDQ 348

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVL 440
           V E  K++RL  L + + E   + +   +GQ+ EVL+E    K   + +GR+   + V  
Sbjct: 349 VPEEEKSDRLQRLNRLVAEVAAARSARLLGQVQEVLVEGPNPKNPRQAMGRTRGNRLVFF 408

Query: 441 NSKNHNI-GDIIKVRITDVKISTLYGELVV 469
                 + G ++ VRIT  +  +L GE V 
Sbjct: 409 EGDPEELQGSLVPVRITATRAFSLTGEAVT 438


>gi|332884749|gb|EGK05005.1| Dimethylallyladenosine tRNA methylthiotransferase miaB
           [Dysgonomonas mossii DSM 22836]
          Length = 456

 Score =  449 bits (1154), Expect = e-124,   Method: Composition-based stats.
 Identities = 159/446 (35%), Positives = 253/446 (56%), Gaps = 9/446 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F+++YGCQMNV DS  +  +    GY   + +++AD + +NTC IR+ A ++V   L
Sbjct: 18  KKLFIETYGCQMNVADSEVVASVMQMDGYTMTDKLEEADAVFVNTCSIRDNAEQRVIQRL 77

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
                LK    K+  ++++ V GC+A+   EE+  +   V+VVVGP  Y  LP L+  A 
Sbjct: 78  DYFNALKR---KKKPNMIIGVLGCMAERVKEELHDKH-HVDVVVGPDAYLDLPNLVGAAE 133

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G + ++   S  + ++ +  +  G N   G   F++I  GCDK C++C+VPYTRG E S
Sbjct: 134 NGNKAINVQLSKTETYKDVIPLRIGGNHISG---FISIMRGCDKVCSYCIVPYTRGRERS 190

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           RS   +++E   L D G  E TLLGQNVN++R    DG    F  LL   ++    +R+R
Sbjct: 191 RSPQSILNELENLRDKGFKEATLLGQNVNSYRFTNEDGSVVDFPALLEMTAKAAPKMRIR 250

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +TTS+P DM+D  ++     D L  ++HLPVQSGS ++L  M R++    Y   I+ I+ 
Sbjct: 251 FTTSYPTDMTDETLEVIAKYDNLCKFIHLPVQSGSSKMLNVMKRKYDREWYLNRIEAIKR 310

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQVD 383
           + P   IS+D + GF  ET++D + T+ L+ ++ +  AF FKYS R GT  S  + + + 
Sbjct: 311 IIPGCGISTDIMCGFHSETEEDQQETLSLMREVCFDSAFMFKYSERPGTYASKKLEDDIP 370

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNS 442
           E+VK +RL  +     E  +  N   VG++ EVL+E   K    +L GR+   + V+ + 
Sbjct: 371 EDVKIKRLQEIIDLQNECSLESNKRDVGKVFEVLVEGFSKRSREQLFGRTSQNKVVIFDK 430

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
            NH IGD + V++T    +TL+GE +
Sbjct: 431 GNHRIGDFVTVKVTGNTSATLFGEAI 456


>gi|262370519|ref|ZP_06063844.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Acinetobacter johnsonii
           SH046]
 gi|262314319|gb|EEY95361.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Acinetobacter johnsonii
           SH046]
          Length = 485

 Score =  448 bits (1153), Expect = e-124,   Method: Composition-based stats.
 Identities = 194/470 (41%), Positives = 287/470 (61%), Gaps = 22/470 (4%)

Query: 10  VAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLN 68
                +  +D  +  ++ ++++ GCQMN YDS RM D+   S GY       +AD++++N
Sbjct: 20  TQPQHTPAIDGSV--KKLYIETQGCQMNEYDSHRMADLLGDSHGYVLTQDPKEADILLMN 77

Query: 69  TCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVV 128
           TC IREKA EKV+S LGR R LK+       DL++ V GCVA  EG+ I +R+  V+++ 
Sbjct: 78  TCSIREKAQEKVFSELGRWRKLKDK----NPDLIIGVGGCVASQEGDNIQKRANYVDMIF 133

Query: 129 GPQTYYRLPELLERAR--------FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFL 180
           GPQT +RLP++L++             ++VD  +   +KF+ L        R  G  AF+
Sbjct: 134 GPQTLHRLPQMLDQHFDQIEKPKKEKIKLVDISFPDIEKFDFLP-----EPRVEGYKAFV 188

Query: 181 TIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL 240
           +I EGC K+C+FCVVPYTRG E+SR L  V+ E   L + GV EI+LLGQNVN +RG+  
Sbjct: 189 SIMEGCSKYCSFCVVPYTRGEEVSRPLDDVLAEIATLAEKGVREISLLGQNVNGYRGETF 248

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300
           +G  CTF+DLL  ++EI G+ RLRYTTSHP + +D LI+ + DL  ++ +LHLPVQSGS+
Sbjct: 249 EGNICTFADLLRLVAEIPGIGRLRYTTSHPLEFNDDLIECYRDLPQMVSHLHLPVQSGSN 308

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
            +L++M R HT   Y   I ++R VRPD+ +SSDFI+GFPGETD  F  T   +  + + 
Sbjct: 309 DVLQAMKRNHTIDVYIDKIAKLRKVRPDMHLSSDFIIGFPGETDAHFEETYQFIKDMDFD 368

Query: 361 QAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
            ++SF YS R GTP S++ +   E VK ERL  +QK ++   +   DA +G I  VL+EK
Sbjct: 369 HSYSFVYSKRPGTPASDLEDTTSEEVKKERLSKVQKWIKRSSIDKTDAMLGTIQRVLVEK 428

Query: 421 HG-KEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKI-STLYGELV 468
              K+   L+G +   + V        +G   ++ +T++K  + +YGEL+
Sbjct: 429 VSDKDPNLLIGTADNTRYVSFIGDATWVGRFAEIEVTEIKTLNFVYGELL 478


>gi|319401418|gb|EFV89628.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
           epidermidis FRI909]
          Length = 517

 Score =  448 bits (1153), Expect = e-124,   Method: Composition-based stats.
 Identities = 170/448 (37%), Positives = 264/448 (58%), Gaps = 15/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + F +K+YGCQMN +D+  M  +  + GY   + +++AD+I++NTC IRE A  KV+S +
Sbjct: 68  RTFLIKTYGCQMNAHDTEVMAGILNALGYSATSDINEADVILINTCAIRENAENKVFSEI 127

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G +++LK    KE  D L+ V GC++Q E    +IL+    V++V G    + LPE+LE 
Sbjct: 128 GNLKHLK----KERPDCLIGVCGCMSQEESVVNKILKSYQNVDMVFGTHNIHHLPEILEE 183

Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           A   K +V   +S E D  E L  V  G+     + A++ I  GCDKFCT+C+VP+TRG 
Sbjct: 184 AYLSKAMVVEVWSKEGDIIENLPKVRDGH-----IKAWVNIMYGCDKFCTYCIVPFTRGK 238

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR    ++DE R+L   G  EITLLGQNVN+  GK ++G      DLL  +S+I  + 
Sbjct: 239 ERSRRPEDIIDEVRELAREGYQEITLLGQNVNS-YGKDIEGLDYELGDLLEDISKID-IP 296

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHP D +D +I+       ++P++HLPVQSG++++LK M R++T   Y  ++ R
Sbjct: 297 RVRFTTSHPWDFTDRMIEVIAKGGNIVPHIHLPVQSGNNQVLKIMGRKYTRESYLDLVSR 356

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I+   P++A+++D IVG+P ET++ F  T+ L D + +  A+++ YS R GTP + M + 
Sbjct: 357 IKEAIPNVALTTDIIVGYPNETEEQFEETLTLYDDVQFEHAYTYLYSQRDGTPAAKMKDN 416

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVL 440
           V   VK ERL  L KK+            G+I+ VL E    K++  L G +   + V  
Sbjct: 417 VPLEVKKERLQRLNKKVGMYSQQAMSQYEGKIVTVLCEGSSKKDENVLAGYTDKNKLVNF 476

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                +IG ++ V+I + K  +L G  +
Sbjct: 477 KGPRESIGKLVDVKIDEAKQYSLNGTFI 504


>gi|332828703|gb|EGK01395.1| Dimethylallyladenosine tRNA methylthiotransferase miaB
           [Dysgonomonas gadei ATCC BAA-286]
          Length = 456

 Score =  448 bits (1153), Expect = e-124,   Method: Composition-based stats.
 Identities = 161/446 (36%), Positives = 258/446 (57%), Gaps = 9/446 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F+++YGCQMNV DS  +  +    GY   + ++DAD + +NTC IR+ A ++V   L
Sbjct: 18  KKLFIETYGCQMNVADSEVVASVMQMDGYTMTDKLEDADAVFVNTCSIRDNAEQRVIQRL 77

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
                LK    K+  ++++ V GC+A+   EE+  +   V+VVVGP  Y  LP L+  A 
Sbjct: 78  DYFNALKR---KKKPNMIIGVLGCMAERVKEELHDKH-HVDVVVGPDAYLDLPNLVGAAE 133

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G++ ++   S  + ++ +  +  G N   G   F++I  GCDK C++C+VPYTRG E S
Sbjct: 134 SGEKAINVVLSKTETYKDVIPLRIGGNHISG---FISIMRGCDKVCSYCIVPYTRGRERS 190

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R    +++E   L D G  E+TLLGQNVN++R +  DG    FS LL  ++     +R+R
Sbjct: 191 RLPQSILNEVADLRDKGFKEVTLLGQNVNSYRYENEDGTVVDFSRLLEIVALEAPKMRIR 250

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +TTS+P DM+D  ++     D L  ++HLPVQSGS R+L  M R++    Y   I+ I+ 
Sbjct: 251 FTTSYPTDMTDETLEVIAKYDNLCKFIHLPVQSGSSRMLNVMKRKYDREWYLNRIEAIKR 310

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQVD 383
           + P   +S+D + GF  ET++D + T+ L+ ++ +  AF FKYS R GT  +  + + V 
Sbjct: 311 IIPGCGLSTDIMCGFHSETEEDQQETLSLMREVCFDSAFMFKYSERPGTFAAKKLEDDVP 370

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRSPWLQSVVLNS 442
           E+VK +RL  + +   E  +  N   +G++ EVL+E   K  K +L GR+   + V+ + 
Sbjct: 371 EDVKIKRLQEIIELQNECSLESNKRDIGKVFEVLVEGFSKRSKEQLFGRTSQNKVVIFDK 430

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
            +H IGD + VRIT    +TL+GE +
Sbjct: 431 GSHRIGDFVTVRITGNTSATLFGEAI 456


>gi|188586121|ref|YP_001917666.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Natranaerobius
           thermophilus JW/NM-WN-LF]
 gi|229890572|sp|B2A3X6|MIAB_NATTJ RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|179350808|gb|ACB85078.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Natranaerobius
           thermophilus JW/NM-WN-LF]
          Length = 451

 Score =  448 bits (1153), Expect = e-124,   Method: Composition-based stats.
 Identities = 166/447 (37%), Positives = 254/447 (56%), Gaps = 15/447 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++F+  ++GCQMN +DS  +  M    G+E+  S ++ADL+++NTC +REKA +KV   +
Sbjct: 10  KKFYTLTFGCQMNEHDSEVLAGMLDQMGFEKAASEEEADLLIINTCAVREKAEQKVLGKI 69

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G +R LK +      D+ + + GC+ Q E    +I R    V+++ G     R P+LLE 
Sbjct: 70  GTLRYLKEN----KPDMKIAIGGCMVQQEHVANKIYRDFTHVDIIFGTHNINRFPQLLEH 125

Query: 143 A-RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
             + GKRV +        FE L      + R+  + A++ I  GCD +C +C+VPY RG 
Sbjct: 126 VMQKGKRVKEISQDDSQVFENLP-----HKREDSIKAWVVISYGCDNYCKYCIVPYVRGQ 180

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           + SR    +  E  KL   G+ EITLLGQNVN+  GK LD +  +F++LL  LS+I+G+ 
Sbjct: 181 QRSRDPEHIKYEVEKLAKEGLKEITLLGQNVNS-YGKDLD-QNISFTNLLEELSKIEGIE 238

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+ TSHP+D    LI    + + +  + HLPVQ+GS++ILK M R +T   Y  I++ 
Sbjct: 239 RIRFMTSHPKDFDKELITTLKESNKICEHFHLPVQAGSNKILKKMGRGYTREHYVDIVND 298

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           IR+  P+ +I++D IVG+PGE ++DF+ T+DLV  + +  AF+F YS R GTP + M EQ
Sbjct: 299 IRAELPNASITTDIIVGYPGEEEEDFQETLDLVQNVKFDSAFTFVYSKRSGTPAAEMAEQ 358

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVL 440
           VDE  K  R+  L    +E     N      +  +L+E   K     L GR+   + V  
Sbjct: 359 VDEQTKKGRIQKLISVQQEISEQRNKDLENTVQRILVEGVSKNNEDMLSGRTRTDKLVHF 418

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGEL 467
                 IG+++ V+IT      LYGE+
Sbjct: 419 PGDKELIGELVDVKITRGHSWNLYGEI 445


>gi|219682347|ref|YP_002468731.1| isopentenyl-adenosine A37 tRNA methylthiolase MiaB (YleA) [Buchnera
           aphidicola str. Tuc7 (Acyrthosiphon pisum)]
 gi|219622080|gb|ACL30236.1| isopentenyl-adenosine A37 tRNA methylthiolase MiaB (YleA) [Buchnera
           aphidicola str. Tuc7 (Acyrthosiphon pisum)]
 gi|311086744|gb|ADP66825.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Buchnera
           aphidicola str. TLW03 (Acyrthosiphon pisum)]
          Length = 439

 Score =  448 bits (1153), Expect = e-124,   Method: Composition-based stats.
 Identities = 180/446 (40%), Positives = 274/446 (61%), Gaps = 12/446 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQG-YERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           +  ++K++GCQMN YDS  +  +      Y    S ++AD+++LNTC IREKA EKV+  
Sbjct: 2   KYIYIKTWGCQMNEYDSSMIITLLEKNNQYSLTKSAENADILILNTCSIREKAQEKVFHQ 61

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + +KN+       +++ V GCVA  EG+EI +R+  V+++ G QT +RLP++++  
Sbjct: 62  LGRWKKIKNN----NPKVIIAVGGCVATQEGKEIFKRANYVDIIFGTQTLHRLPKMIDEV 117

Query: 144 RFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
              +++ +D  +   +KF+          +K+G TA ++I EGC+K+C+FCVVPYTRG E
Sbjct: 118 EKKRKLSIDISFPKLEKFKYFL-----APKKKGYTADISIMEGCNKYCSFCVVPYTRGNE 172

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           ISR    V+ E   L   G+ EI LLGQNVNA++G   +G+ C FS+L+  ++EI G+ R
Sbjct: 173 ISRPCDDVLFEISLLAKQGIKEINLLGQNVNAYQGPTFNGKVCYFSELIRLVAEIDGIER 232

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTS+P + +D +I+ + D   L+ +LHLPVQSGS++IL  M R +T  +Y  II ++
Sbjct: 233 IRFTTSNPLEFTDDIIEVYKDTPKLVSFLHLPVQSGSNKILNLMKRSYTTEDYTSIIKKL 292

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
              RPDI ISSDFIVGFPGE++ DF  T++ +  I +  +FSF YS R GTP SNM + +
Sbjct: 293 TIARPDIQISSDFIVGFPGESEIDFEKTIEFIKNINFDMSFSFIYSARPGTPASNMNDNL 352

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441
           D   K  RL  LQ+++  Q + ++    G I  VL+E    +    L GR+   + V   
Sbjct: 353 DLKEKKRRLYILQERINIQTMLWSRKMFGSIQSVLVEGVSDKNIMDLYGRTENNRVVTFQ 412

Query: 442 SKNHNIGDIIKVRITDVKISTLYGEL 467
             +  IG  + V+I  V   +L GEL
Sbjct: 413 GSSEMIGQFVNVKIKKVHTHSLKGEL 438


>gi|302554591|ref|ZP_07306933.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Streptomyces
           viridochromogenes DSM 40736]
 gi|302472209|gb|EFL35302.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Streptomyces
           viridochromogenes DSM 40736]
          Length = 508

 Score =  448 bits (1153), Expect = e-124,   Method: Composition-based stats.
 Identities = 172/451 (38%), Positives = 256/451 (56%), Gaps = 20/451 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEKVYS 82
           + + V++YGCQMNV+DS R+  +    GY R       +AD++V NTC +RE A  K+Y 
Sbjct: 14  RTYEVRTYGCQMNVHDSERLAGLLEDAGYVRAPEGSDGEADVVVFNTCAVRENADNKLYG 73

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            LG +   K  R      + + V GC+AQ + + I++++P V+VV G     +LP LLER
Sbjct: 74  NLGHLAPKKAGR----PGMQIAVGGCLAQKDRDTIVKKAPWVDVVFGTHNIGKLPVLLER 129

Query: 143 ARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           AR  +   V+   S+E     L        R+    A+++I  GC+  CTFC+VP  RG 
Sbjct: 130 ARVQEEAQVEIAESLEAFPSTLPT-----RRESAYAAWVSISVGCNNTCTFCIVPALRGK 184

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E  R    ++ E   L+ +GV EITLLGQNVNA  G  + G++  FS LL +  +I+GL 
Sbjct: 185 EKDRRPGDILAEIEALVADGVSEITLLGQNVNA-YGSDI-GDREAFSKLLRACGKIEGLE 242

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+T+ HPRD +D +I A  +   +MP LH+P+QSGSD +LK+M R +    Y  II++
Sbjct: 243 RVRFTSPHPRDFTDDVIAAMAETPNVMPQLHMPLQSGSDPVLKAMRRSYRQERYLGIIEK 302

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R+  P  AIS+D IVGFPGET++DF  T+ +V +  +AQAF+F+YS R GTP + M  Q
Sbjct: 303 VRAAIPHAAISTDIIVGFPGETEEDFEQTLHVVREARFAQAFTFQYSKRPGTPAAEMDGQ 362

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKG---KLVGRSPWLQS 437
           + + V  ER   L     E     N   VG+ +E+++ E  G++     +L GR+P  + 
Sbjct: 363 IPKKVVQERYERLVALQEEISWEENKKQVGRTLELMVAEGEGRKDDSTHRLSGRAPDNRL 422

Query: 438 VVL--NSKNHNIGDIIKVRITDVKISTLYGE 466
           V      +    GD++ V IT      L  E
Sbjct: 423 VHFTKPDQEVRPGDVVTVEITYAAPHHLLAE 453


>gi|15617040|ref|NP_240253.1| hypothetical protein BU441 [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
 gi|11387299|sp|P57516|MIAB_BUCAI RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|25305427|pir||C84981 hypothetical protein [imported] - Buchnera sp. (strain APS)
 gi|10039105|dbj|BAB13139.1| hypothetical protein [Buchnera aphidicola str. APS (Acyrthosiphon
           pisum)]
          Length = 439

 Score =  448 bits (1153), Expect = e-124,   Method: Composition-based stats.
 Identities = 180/446 (40%), Positives = 274/446 (61%), Gaps = 12/446 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQG-YERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           +  ++K++GCQMN YDS  +  +      Y    S ++AD+++LNTC IREKA EKV+  
Sbjct: 2   KYIYIKTWGCQMNEYDSSMIITLLEKNNQYSLTKSAENADILILNTCSIREKAQEKVFHQ 61

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + +KN+       +++ V GCVA  EG+EI +R+  V+++ G QT +RLP++++  
Sbjct: 62  LGRWKKIKNN----NPKVIIAVGGCVATQEGKEIFKRANYVDIIFGTQTLHRLPKMIDEV 117

Query: 144 RFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
              +++ +D  +   +KF+          +K+G TA ++I EGC+K+C+FCVVPYTRG E
Sbjct: 118 EKKRKLSIDISFPKLEKFKYFL-----APKKKGYTADISIMEGCNKYCSFCVVPYTRGNE 172

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           ISR    V+ E   L   G+ EI LLGQNVNA++G   +G+ C FS+L+  ++EI G+ R
Sbjct: 173 ISRPCDDVLFEISLLAKQGIKEINLLGQNVNAYQGPTFNGKVCYFSELIRLVAEIDGIER 232

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTS+P + +D +I+ + D   L+ +LHLPVQSGS++IL  M R +T  +Y  II ++
Sbjct: 233 IRFTTSNPLEFTDDIIEVYKDTPKLVSFLHLPVQSGSNKILNLMKRSYTTEDYTSIIKKL 292

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
              RPDI ISSDFIVGFPGE++ DF  T++ +  I +  +FSF YS R GTP SNM + +
Sbjct: 293 TIARPDIQISSDFIVGFPGESEIDFEKTIEFIKNINFDMSFSFIYSARPGTPASNMNDDL 352

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441
           D   K  RL  LQ+++  Q + ++    G I  VL+E    +    L GR+   + V   
Sbjct: 353 DLKEKKRRLYILQERINIQTMLWSRKMFGSIQSVLVEGVSDKNIMDLYGRTENNRVVTFQ 412

Query: 442 SKNHNIGDIIKVRITDVKISTLYGEL 467
             +  IG  + V+I  V   +L GEL
Sbjct: 413 GSSKMIGQFVNVKIKKVHTHSLKGEL 438


>gi|224542096|ref|ZP_03682635.1| hypothetical protein CATMIT_01271 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525029|gb|EEF94134.1| hypothetical protein CATMIT_01271 [Catenibacterium mitsuokai DSM
           15897]
          Length = 483

 Score =  448 bits (1153), Expect = e-124,   Method: Composition-based stats.
 Identities = 165/448 (36%), Positives = 260/448 (58%), Gaps = 16/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           Q +++++YGCQ N  D+  +  +    GY   + +  AD+++LNTC IRE A EKV+  +
Sbjct: 44  QTYYIQTYGCQANERDTETLSGILEMMGYTHTDEVKQADVVLLNTCAIRENAEEKVFGKI 103

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQ--AEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
           G ++N+K    K   +L+  V GC+AQ      +IL + P V+++ G    +RLP LL++
Sbjct: 104 GYLKNIK----KTRPNLIFGVCGCMAQEEVVVNKILEKFPQVDLIFGTHNIHRLPVLLKQ 159

Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           A   K +V   +S E D  E L       +R     A++ I  GC+KFCT+C+VPYTRG 
Sbjct: 160 AMLEKELVLEVWSKEGDVIENLP-----SHRANNYKAWVNIMYGCNKFCTYCIVPYTRGK 214

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR L +++ E  +L ++G  EITLLGQNVN+  GK L+     F+ LL ++++  G+ 
Sbjct: 215 ERSRELEEIIKEVEELKNSGYKEITLLGQNVNS-YGKDLN-NGTDFATLLEAVAK-TGID 271

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHP D +  +I      D +MP +HLPVQSG+D +L+ M RR++   Y ++ D 
Sbjct: 272 RIRFTTSHPWDFNADMIDIIAKYDNIMPSIHLPVQSGNDDVLQLMGRRYSKESYLKLFDM 331

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I+   PD  +++D IVGFP ET++ F+ T+ L +   Y  A++F YSPR GTP + M + 
Sbjct: 332 IKEKIPDCTVTTDIIVGFPNETEEQFQDTLSLYNYCKYDLAYTFIYSPREGTPAAKMEDN 391

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVL 440
           V  + K +RL  L + + +     N   +GQ+++VL+E   K+    L G +   + +  
Sbjct: 392 VPLSDKEQRLYRLNELVNKYANEANQKYLGQVVKVLVEGPSKKNPDVLSGYTEHNKLINF 451

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 +G I+ VR+T+ K   L GE V
Sbjct: 452 KGDASMVGQIVDVRVTEAKTWALTGEQV 479


>gi|313887037|ref|ZP_07820737.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|312923563|gb|EFR34372.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Porphyromonas
           asaccharolytica PR426713P-I]
          Length = 450

 Score =  448 bits (1152), Expect = e-123,   Method: Composition-based stats.
 Identities = 157/446 (35%), Positives = 252/446 (56%), Gaps = 9/446 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +R F+++YGCQMNV DS  +       GY+  + +D+AD +++NTC +R+ A ++    +
Sbjct: 10  KRVFIETYGCQMNVADSEIIAAQMQLAGYQLTDQIDEADAVLINTCSVRDNAEQR---II 66

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R+ NL   R + G   +V V GC+A+   E +++    V++V GP  Y  LP L+  A 
Sbjct: 67  HRLDNLNGQRRRSGHPQIVGVLGCMAERVRETLIQDH-GVDLVAGPDAYTDLPHLIAAAE 125

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G+  +  + S  + +  +  V        G   F++I  GCD FCT+C+VPYTRG E S
Sbjct: 126 AGEPAISIELSKSETYSDVIPVRLPGLHISG---FVSIMRGCDNFCTYCIVPYTRGRERS 182

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R    +V E +++   G  E+TLLGQNVN++  +   G   TF+DLL  ++E    +R+R
Sbjct: 183 RDPESIVREVQRMAQEGYREVTLLGQNVNSYCWQSETGVSYTFADLLRKVAEAVPTMRIR 242

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +T+ HP+DM D  ++       +  ++H P+QSGS+RIL+ M+RR+T   Y + ++RIR 
Sbjct: 243 FTSPHPKDMKDETLEVMSLYPNICRHIHFPLQSGSNRILERMHRRYTREWYLERVERIRD 302

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN-MLEQVD 383
             PD  +S+D   GF GET++DF+ T++++ +     AF FKYS R GT  S  +++ V 
Sbjct: 303 YMPDCGLSTDVFCGFSGETEEDFQETLEVMRQARLDSAFMFKYSERPGTYASRHLVDDVP 362

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNS 442
           E VK ERL  +     E  +  N+  VG+  EVLIE + K       GR+   + +V   
Sbjct: 363 EEVKVERLNRMIALQNELSLESNERDVGKSFEVLIEGYSKRSRDDFFGRTQQNKVIVFPK 422

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
            ++ IG ++ VR+  V  +T+ G  V
Sbjct: 423 GHNQIGKLVTVRVERVTSATMIGSEV 448


>gi|224023497|ref|ZP_03641863.1| hypothetical protein BACCOPRO_00199 [Bacteroides coprophilus DSM
           18228]
 gi|224016719|gb|EEF74731.1| hypothetical protein BACCOPRO_00199 [Bacteroides coprophilus DSM
           18228]
          Length = 455

 Score =  448 bits (1152), Expect = e-123,   Method: Composition-based stats.
 Identities = 160/446 (35%), Positives = 254/446 (56%), Gaps = 11/446 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F+++YGCQMNV DS  +  +    GY    ++++AD + +NTC IR+ A +K+ + L
Sbjct: 19  KKLFIETYGCQMNVADSEVIASIMQMAGYSPCETLEEADAVFMNTCSIRDNAEQKILNRL 78

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
               +L+  R      L+V V GC+A+    +++     V++V GP  Y  LPEL+    
Sbjct: 79  EFFHSLRKKRK----HLIVGVLGCMAERVKNDLI-EHHHVDLVAGPDAYLTLPELISAVE 133

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G++ ++ + S  + +  +       N   G   +++I  GC+ FC +C+VPYTRG E S
Sbjct: 134 AGEKAINVELSTTETYRDVIPSRICGNHISG---YVSIMRGCNNFCHYCIVPYTRGRERS 190

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R +  +++E   L   G  E+TLLGQNVN++R +  DG+  TF  LL  ++E    +R+R
Sbjct: 191 RDVESILNEVHDLERKGYKEVTLLGQNVNSYRFE-RDGQTVTFPMLLRLVAESVPGMRIR 249

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +TTSHP+DMSD  +    ++  +  ++HLPVQSGS RILK MNR++T   Y + ++ IR 
Sbjct: 250 FTTSHPKDMSDETLHVIAEVPNVCKHIHLPVQSGSSRILKLMNRKYTREWYLERVEAIRR 309

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN-MLEQVD 383
           + PD  +S+D   GF  ET++D + ++ L+ +  Y  AF FKYS R GT  S  + + V 
Sbjct: 310 IIPDCGLSTDIFSGFHSETEEDHQMSLSLMRECAYDSAFMFKYSERPGTYASKHLPDDVP 369

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRSPWLQSVVLNS 442
           E +K  RL  + +   +     N   VG+  EVL+E   K  K +L GR+   + VV + 
Sbjct: 370 EEIKIRRLNEMIELQNQLSAESNARDVGKTFEVLVEGVSKRSKDQLFGRTEQNKVVVFDR 429

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
             H IGD ++VRITD   +TL G  +
Sbjct: 430 GTHRIGDFVQVRITDSSSATLKGTAL 455


>gi|332881524|ref|ZP_08449173.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Capnocytophaga sp. oral
           taxon 329 str. F0087]
 gi|332680522|gb|EGJ53470.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Capnocytophaga sp. oral
           taxon 329 str. F0087]
          Length = 441

 Score =  448 bits (1152), Expect = e-123,   Method: Composition-based stats.
 Identities = 163/446 (36%), Positives = 260/446 (58%), Gaps = 10/446 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F+++YGCQMNV DS  +  +    GYE   ++D+AD + LNTC +R+ A +K+ + L
Sbjct: 2   KKLFIETYGCQMNVADSEVVASVMRMAGYETCETLDEADAVFLNTCSVRDNAEQKIINRL 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             +  L+      G  L++ V GC+A+   EE++     V+VV GP  Y  LP+L+ +  
Sbjct: 62  EALHALRRK----GRHLIIGVLGCMAERVKEELIENH-HVDVVAGPDAYLSLPDLIAQVE 116

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G + ++ + SV + ++ +       +   G   F++I  GC+ FC +C+VPYTRG E S
Sbjct: 117 LGHKAINVELSVTETYKDVIPQRVCGSHISG---FVSIMRGCNNFCHYCIVPYTRGRERS 173

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R +  +++E R L   G  E+TLLGQNVN++  +G DG+  +F +LL  ++     +R+R
Sbjct: 174 RDVESILNEVRDLKKRGYKEVTLLGQNVNSYLHEGADGKTVSFPELLRLVAHEADGMRVR 233

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +TTSHP+DMSD  ++   +   +  ++HLPVQSGS+RILK MNR++T   Y   +  IR 
Sbjct: 234 FTTSHPKDMSDDTLRVIAEEPNVCRHIHLPVQSGSNRILKLMNRKYTREWYLDRVAAIRR 293

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN-MLEQVD 383
           + PD  +S+D   G+  ET++D + ++ L+ +  Y  AF FKYS R GT  S  + + V 
Sbjct: 294 IVPDCGLSTDIFSGYCSETEEDHQMSLSLMRECAYDSAFMFKYSERPGTYASKHLPDDVS 353

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRSPWLQSVVLNS 442
           E+VK  RL  L     E     N  C G++ EVL+E   K  K +L GR+   + VV + 
Sbjct: 354 EDVKVRRLNELIALQNELSAESNRRCEGRVYEVLVEGVSKRSKEQLFGRTEQNKVVVFDR 413

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
             +++GD +KVR+     +TL GE+V
Sbjct: 414 GKYHVGDFVKVRVNGSSSATLKGEVV 439


>gi|223044509|ref|ZP_03614536.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus capitis
           SK14]
 gi|222442106|gb|EEE48224.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus capitis
           SK14]
          Length = 514

 Score =  448 bits (1152), Expect = e-123,   Method: Composition-based stats.
 Identities = 170/448 (37%), Positives = 264/448 (58%), Gaps = 15/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + F +K+YGCQMN +D+  M  +  + GY     ++ AD+I++NTC IRE A  KV+S +
Sbjct: 68  RTFLIKTYGCQMNAHDTEVMAGILKALGYSATTDINQADVILINTCAIRENAENKVFSEI 127

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G +++LK    KE  D L+ V GC++Q E    +IL+    V+++ G    + LPE+LE 
Sbjct: 128 GNLKHLK----KERPDCLIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHHLPEILEE 183

Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           A   K +V   +S E D  E L  V     R+  + A++ I  GCDKFCT+C+VP+TRG 
Sbjct: 184 AYLSKAMVVEVWSKEGDVIENLPKV-----REGSIKAWVNIMYGCDKFCTYCIVPFTRGK 238

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR    +++E R+L   G  EITLLGQNVN+  GK ++       DLL  +S+I  + 
Sbjct: 239 ERSRRPEDIINEVRELAREGYQEITLLGQNVNS-YGKDIEDLDYGLGDLLEDISKID-IP 296

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHP D +D +I+   +   ++P++HLPVQSG++ +LK M R++T   Y  +++R
Sbjct: 297 RVRFTTSHPWDFTDRMIEVIANGGNIVPHIHLPVQSGNNAVLKIMGRKYTRESYLDLVNR 356

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I++  P+IA+++D IVG+P ET++ F  T+ L D++ +  A+++ YS R GTP + M + 
Sbjct: 357 IKTAIPNIALTTDIIVGYPNETEEQFEETLSLYDEVEFEHAYTYLYSQRDGTPAAKMKDN 416

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440
           V   VK ERL  L KK+ E          G+I+ VL E   K+    L G +   + V  
Sbjct: 417 VPTEVKKERLQRLNKKVGEYSQKAMSKYEGKIVTVLCEGASKKDDTVLAGYTDKNKLVNF 476

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
            +    IG ++ V+I + K  +L G  V
Sbjct: 477 KAPKEMIGKLVDVKIDEAKQYSLNGTFV 504


>gi|94498011|ref|ZP_01304575.1| 2-methylthioadenine synthetase [Sphingomonas sp. SKA58]
 gi|94422594|gb|EAT07631.1| 2-methylthioadenine synthetase [Sphingomonas sp. SKA58]
          Length = 428

 Score =  447 bits (1151), Expect = e-123,   Method: Composition-based stats.
 Identities = 234/433 (54%), Positives = 299/433 (69%), Gaps = 10/433 (2%)

Query: 36  MNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRI 95
           MNVYD  RM +M  +QG        DADL++LNTCHIREKA +KVYS +GR+        
Sbjct: 1   MNVYDGERMAEMLGTQGMTPAAEGTDADLVILNTCHIREKAVDKVYSDIGRL------TR 54

Query: 96  KEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYS 155
            +G   ++ VAGCVAQAEG EI RR+  V++VVGPQ Y+RLP+L+++   G+  VDTD  
Sbjct: 55  DDGSRPMIAVAGCVAQAEGSEIQRRARNVDIVVGPQAYHRLPDLIDKVGRGEAAVDTDMP 114

Query: 156 VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEAR 215
              KF  L        ++   TAFLTI EGCDKFCT+CVVPYTRG EISRS S +VDEA+
Sbjct: 115 AASKFGALP----ARTKQARPTAFLTIMEGCDKFCTYCVVPYTRGAEISRSWSAIVDEAK 170

Query: 216 KLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSD 275
            L+D G  EITLLGQNVNAW G+   G       L+  L++I  L R+RYTTSHP DMSD
Sbjct: 171 ALVDGGAREITLLGQNVNAWTGEDDKGRAQGMDGLVRELAKIPDLRRIRYTTSHPNDMSD 230

Query: 276 CLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDF 335
            LI AHGD+D LMP+LHLPVQ+G+DRILK+MNR H+A  Y +II+R+R  RPDIAIS DF
Sbjct: 231 GLIAAHGDIDKLMPFLHLPVQAGNDRILKAMNRSHSADSYLRIIERVRQARPDIAISGDF 290

Query: 336 IVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQ 395
           IVGFPGETD +F  T+ +V+++ YAQ +SFKYSPR GTP ++M  Q+   V  ERL  LQ
Sbjct: 291 IVGFPGETDAEFEDTLRIVEQVRYAQCYSFKYSPRPGTPAADMDHQIPAAVMDERLSRLQ 350

Query: 396 KKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRI 455
             L  QQ  FN A VG+  ++L+E+ G+  G+L+G+SPWLQSVV+ +   +IGD++ V I
Sbjct: 351 ALLNRQQAEFNAATVGRTTQILLERKGRHPGQLIGKSPWLQSVVVTAPELSIGDLVNVDI 410

Query: 456 TDVKISTLYGELV 468
                ++L GE V
Sbjct: 411 ISAGPNSLAGETV 423


>gi|172037723|ref|YP_001804224.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Cyanothece sp.
           ATCC 51142]
 gi|229890507|sp|B1WU96|MIAB_CYAA5 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|171699177|gb|ACB52158.1| tRNA-i(6)A37 modification enzyme MiaB [Cyanothece sp. ATCC 51142]
          Length = 448

 Score =  447 bits (1151), Expect = e-123,   Method: Composition-based stats.
 Identities = 183/461 (39%), Positives = 273/461 (59%), Gaps = 23/461 (4%)

Query: 18  VDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA 77
           +     P+R+ + ++GCQMN  DS RM  +    G++     + ADLI+ NTC IR+ A 
Sbjct: 1   MTMTSTPRRYHITTFGCQMNKADSERMAGILEDMGFKWSEDPNTADLILYNTCTIRDNAE 60

Query: 78  EKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLP 137
           +KVYS+LGR    K+       DL +VVAGCVAQ EGE+ILRR P +++V+GPQ   RL 
Sbjct: 61  QKVYSYLGRQAKRKHEH----PDLTLVVAGCVAQQEGEKILRRVPELDLVMGPQHANRLQ 116

Query: 138 ELLERARFGKRVVDTD--YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
           +LL +   G +VV T+  + VED  +          R   VTA++ I  GC++ C++CVV
Sbjct: 117 DLLTQVFDGNQVVATEPIHIVEDITKP--------RRDSTVTAWVNIIYGCNERCSYCVV 168

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG------EKCTFSD 249
           P  RG+E SR+   +  E   L   G  E+TLLGQN++A  G+ L G       + T +D
Sbjct: 169 PNVRGVEQSRTPEAIYAEMELLGKQGYKEVTLLGQNIDA-YGRDLPGVTETGRHQHTLTD 227

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
           LLY + +I G+ RLR+ TSHPR  ++ LIKA  +L  +  + H+P QSG + +LK+M R 
Sbjct: 228 LLYQVHDISGIERLRFATSHPRYFTERLIKACHELPKVCEHFHIPFQSGDNDVLKAMKRG 287

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369
           +T  +YR IID+IR   PD +IS+D IVGFPGET+  F  T+ LVD IG+ Q  +  YSP
Sbjct: 288 YTHEKYRHIIDKIREYMPDASISADAIVGFPGETEAQFENTLKLVDDIGFDQLNTAAYSP 347

Query: 370 RLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKL 428
           R GTP +    Q+ E +K++RL  L   + ++    +   + +I EVL+E ++ K+  ++
Sbjct: 348 RPGTPAAIWDNQLSEEIKSDRLQRLNHLVAQKAAQRSQRYLNRIEEVLVEDENPKDNTQV 407

Query: 429 VGRSPWLQSVVLNSK-NHNIGDIIKVRITDVKISTLYGELV 468
           +GR+   +            G +IKV+IT+V+  +L GE +
Sbjct: 408 MGRTRGNRLTFFEGDIEALKGQLIKVKITEVRAFSLTGEAI 448


>gi|242242576|ref|ZP_04797021.1| tRNA-i(6)A37 modification enzyme MiaB [Staphylococcus epidermidis
           W23144]
 gi|242234003|gb|EES36315.1| tRNA-i(6)A37 modification enzyme MiaB [Staphylococcus epidermidis
           W23144]
          Length = 514

 Score =  447 bits (1151), Expect = e-123,   Method: Composition-based stats.
 Identities = 170/448 (37%), Positives = 264/448 (58%), Gaps = 15/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + F +K+YGCQMN +D+  M  +  + GY   + +++AD+I++NTC IRE A  KV+S +
Sbjct: 68  RTFLIKTYGCQMNAHDTEVMAGILNALGYSATSDINEADVILINTCAIRENAENKVFSEI 127

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G +++LK    KE  D L+ V GC++Q E    +IL+    V++V G    + LPE+LE 
Sbjct: 128 GNLKHLK----KERPDCLIGVCGCMSQEESVVNKILKSYQNVDMVFGTHNIHHLPEILEE 183

Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           A   K +V   +S E D  E L  V  G+     + A++ I  GCDKFCT+C+VP+TRG 
Sbjct: 184 AYLSKAMVVEVWSKEGDIIENLPKVRDGH-----IKAWVNIMYGCDKFCTYCIVPFTRGK 238

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR    ++DE R+L   G  EITLLGQNVN+  GK ++G      DLL  +S+I  + 
Sbjct: 239 ERSRRPEDIIDEVRELAREGYQEITLLGQNVNS-YGKDIEGLDYELGDLLEDISKID-IP 296

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHP D +D +I+       ++P++HLPVQSG++++LK M R++T   Y  ++ R
Sbjct: 297 RVRFTTSHPWDFTDRMIEVIAKGGNIVPHIHLPVQSGNNQVLKIMGRKYTRESYLDLVSR 356

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I+   P++A+++D IVG+P ET++ F  T+ L D + +  A+++ YS R GTP + M + 
Sbjct: 357 IKEAIPNVALTTDIIVGYPNETEEQFEETLTLYDDVQFEHAYTYLYSQRDGTPAAKMKDN 416

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVL 440
           V   VK ERL  L KK+            G+I+ VL E    K++  L G +   + V  
Sbjct: 417 VPLEVKKERLQRLNKKVGMYSQQAMSQYEGKIVTVLCEGSSKKDESVLAGYTDKNKLVNF 476

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                +IG ++ V+I + K  +L G  +
Sbjct: 477 KGPRESIGKLVDVKIDEAKQYSLNGTFI 504


>gi|269122389|ref|YP_003310566.1| RNA modification enzyme, MiaB family [Sebaldella termitidis ATCC
           33386]
 gi|268616267|gb|ACZ10635.1| RNA modification enzyme, MiaB family [Sebaldella termitidis ATCC
           33386]
          Length = 445

 Score =  447 bits (1151), Expect = e-123,   Method: Composition-based stats.
 Identities = 174/445 (39%), Positives = 267/445 (60%), Gaps = 10/445 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++  + +YGCQMNV +S +M+ M  S GY+ V+ +  +DL++LNTC +RE AA KVY  L
Sbjct: 10  KKATIITYGCQMNVNESAKMKKMLQSIGYKIVDDIKISDLVLLNTCTVREGAAVKVYGKL 69

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           G ++ LK  R     ++++ V GC+AQ   EE ++R+P V++V+G Q   +LP+++E+ +
Sbjct: 70  GELKKLKEKR----NNMIIGVTGCLAQEVREEFIKRTPFVDLVIGNQNIAKLPDIIEKIQ 125

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G   VD    VED+ E    VD  +     + A ++I  GC+ +CTFC+VPY RG+E S
Sbjct: 126 KG--TVDHIVMVEDEDELPKRVDADFG--DDIVASVSITYGCNNYCTFCIVPYVRGMERS 181

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
             + +++D+ ++  D G  EI  LGQNVN+  G         F+ LL   + I+G   L+
Sbjct: 182 VPMREILDDVKQYADKGYKEILFLGQNVNS-YGSDRIEMGEDFAGLLTKAANIEGDFWLK 240

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           Y + HP+D +D +IKA  +   +   LHLP+QSGS +IL +MNR +T  E+ ++  +I+ 
Sbjct: 241 YISPHPKDFTDSVIKAIAENPKVARMLHLPLQSGSTKILGAMNRGYTKEEFIELALKIKK 300

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             PDI I++D IVGFPGETD+DF+ T+D+V+++G+  AF F YS R GTP + + EQV E
Sbjct: 301 EIPDIGITTDIIVGFPGETDEDFQDTLDVVEQVGFENAFMFMYSKRSGTPAAVLEEQVPE 360

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKH-GKEKGKLVGRSPWLQSVVLNSK 443
            VK ERL  L +    +    +    GQ ++VL+E    K    L GR+   + V+    
Sbjct: 361 QVKKERLQQLMRLQNARAKEESKKYYGQTLKVLVEGPSSKNPDMLTGRTSTHKIVLFKGD 420

Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468
               G  + V+I + K  TLYGELV
Sbjct: 421 EELSGKFVNVKIYETKTWTLYGELV 445


>gi|219854806|ref|YP_002471928.1| hypothetical protein CKR_1463 [Clostridium kluyveri NBRC 12016]
 gi|219568530|dbj|BAH06514.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 454

 Score =  447 bits (1151), Expect = e-123,   Method: Composition-based stats.
 Identities = 168/464 (36%), Positives = 266/464 (57%), Gaps = 13/464 (2%)

Query: 8   IGVAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVL 67
           + +  +    ++     + FF+ +YGCQMN  DS ++  +    GY+R  +   ADLI+ 
Sbjct: 1   MNLMPLEVTCMEDKFRNKSFFISTYGCQMNEEDSEKLSGILKKMGYKRAENKLSADLIIF 60

Query: 68  NTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVN 125
           NTC +RE A  KVY  LG ++ LK    K+  +L++ + GC+ Q +G  E+++++ P V+
Sbjct: 61  NTCCVRENAELKVYGNLGALKKLK----KQRPELIIALCGCMMQQKGMAEKVIKKFPFVD 116

Query: 126 VVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEG 185
           ++ G    Y+ PE L R       V      ED       +D    R+  V AF+TI  G
Sbjct: 117 IIFGTHNAYKFPEYLNRVNHQNVSVIEIQDKEDGIVEGVPID----RESSVKAFVTIMYG 172

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C+ FC +C+VPY RG E SR    + +E ++L+  G  E+TLLGQNVN+  GK L+  + 
Sbjct: 173 CNNFCAYCIVPYVRGRERSRKPEDIENEIKELVSKGYKEVTLLGQNVNS-YGKNLNP-RV 230

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
            FS+LL  ++ + G+ R+R+ TSHP+D++D +I    + D +  ++HLPVQSGS RILK 
Sbjct: 231 NFSELLRRINNVDGIERIRFMTSHPKDLTDDVIDVISECDKICEHIHLPVQSGSTRILKK 290

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           MNR ++  +Y  ++  I+   PD +I++D IVGFPGET++DF  T++L + + +  AF+F
Sbjct: 291 MNRNYSKEQYLALVSEIKHKIPDASITTDIIVGFPGETEEDFEETLNLAEGVEFDSAFTF 350

Query: 366 KYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-E 424
            YS R GTP   + EQ+ ++VK ER   L + + +     N    G+I EVL+E   K +
Sbjct: 351 IYSKREGTPAYKIEEQISDDVKHERFNRLVEVINKSAAKKNKVYEGRIEEVLVEGPSKND 410

Query: 425 KGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
             KL+GR+   + V        IG+++KV IT     +L G  +
Sbjct: 411 STKLMGRTRTGKLVNFQGDKAFIGELVKVEITKATSFSLLGRQI 454


>gi|39997296|ref|NP_953247.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Geobacter
           sulfurreducens PCA]
 gi|81701892|sp|Q74B44|MIAB_GEOSL RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|39984186|gb|AAR35574.1| tRNA-i(6)A37 modification enzyme MiaB [Geobacter sulfurreducens
           PCA]
 gi|298506234|gb|ADI84957.1| tRNA-i(6)A37 modification enzyme MiaB [Geobacter sulfurreducens
           KN400]
          Length = 446

 Score =  447 bits (1151), Expect = e-123,   Method: Composition-based stats.
 Identities = 174/445 (39%), Positives = 263/445 (59%), Gaps = 9/445 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +  +V+++GCQMNV DS ++  +   +GY   +  + ADL++LNTC +R KA +KVY  L
Sbjct: 5   KYLYVETFGCQMNVNDSEKIATLLKDEGYLPTDDPERADLVILNTCSVRAKAEQKVYGHL 64

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR +             L+ V GCVAQ EGE +L++ P +++V G    + LPE++  A 
Sbjct: 65  GRFK----GVRSRKKGFLLGVGGCVAQQEGERLLQKVPWLDLVFGTHNLHLLPEIVRAAE 120

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G+R  +  +   +    L    GG     GVT F+T+ +GCD FC++C+VPY RG EIS
Sbjct: 121 RGERRAEVGFIDNETRLDLFPETGGEG---GVTRFVTVMQGCDNFCSYCIVPYVRGREIS 177

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R  S ++DE RK +  GV E+TLLGQNVN+  G   +GE  +F+ L+  ++E++GL R+R
Sbjct: 178 RRSSDIIDEVRKSVAEGVKEVTLLGQNVNS-YGLKTEGE-LSFAGLIRRIAEVEGLERIR 235

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +TTSHP+D+S  LI    ++  L  ++HLP QSGSD +L  MNR +T   Y + ++ +R+
Sbjct: 236 FTTSHPKDISPELIACFAEVPKLCGHIHLPAQSGSDAVLARMNRGYTRAGYLEKVEALRA 295

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
            RP I  + D IVGFPGET++DF+AT+ L++++ YA  FSF YSPR  T  + + + V  
Sbjct: 296 ARPGIQFTGDMIVGFPGETEEDFQATISLMEEVRYADLFSFIYSPRPETAAAGIRDTVSR 355

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
             K  RL  LQ   ++ +   N + VG    VL+E   K   +L GR    + V   +  
Sbjct: 356 KEKQSRLDRLQTLQQQMKRERNISFVGTRQLVLVEGVSKRGDQLYGRIDGNRIVNFAADQ 415

Query: 445 HNIGDIIKVRITDVKISTLYGELVV 469
             IG + +V IT    ++L GE+V 
Sbjct: 416 SLIGTMAEVTITQDYQNSLLGEIVT 440


>gi|56751740|ref|YP_172441.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Synechococcus
           elongatus PCC 6301]
 gi|81301183|ref|YP_401391.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Synechococcus
           elongatus PCC 7942]
 gi|81561774|sp|Q5N199|MIAB_SYNP6 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|123755327|sp|Q31KL5|MIAB_SYNE7 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|56686699|dbj|BAD79921.1| hypothetical protein [Synechococcus elongatus PCC 6301]
 gi|81170064|gb|ABB58404.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Synechococcus elongatus
           PCC 7942]
          Length = 452

 Score =  447 bits (1151), Expect = e-123,   Method: Composition-based stats.
 Identities = 172/454 (37%), Positives = 269/454 (59%), Gaps = 19/454 (4%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
            P+R+ + ++GCQMN  DS RM  +    GY      +DADL++ NTC IR+ A +KVYS
Sbjct: 3   TPRRYHITTFGCQMNKADSERMAGILEDLGYIWSEEANDADLVLYNTCTIRDNAEQKVYS 62

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
           +LGR    K    ++  DL ++VAGCVAQ EGE +LRR P +++V+GPQ   RL +LL +
Sbjct: 63  YLGRQAERK----RQQPDLTLIVAGCVAQQEGESLLRRVPELDLVMGPQHANRLADLLAQ 118

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
              G +VV T+    +  E ++       R   +TA++ +  GC++ CT+CVVP  RG E
Sbjct: 119 VEAGSQVVATEEV--EIAEDITQPR----RDSTITAWVNVIYGCNERCTYCVVPNVRGRE 172

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC------TFSDLLYSLSE 256
            SR  + +  E  +L   G  EITLLGQN++A  G+ L G         T +DLLY++ +
Sbjct: 173 QSREPAAIRAEIEQLAAQGYREITLLGQNIDA-YGRDLPGSTPEGRHLHTLTDLLYTIHD 231

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           + G+ R+R+ TSHPR  ++ LI+A  +L  +  Y H+P QSG + +LK+M R +T   Y 
Sbjct: 232 VPGIERIRFATSHPRYFTERLIRACAELPKVCEYFHIPFQSGDNDVLKAMARGYTVERYL 291

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
           +I+++IR + PD AIS+D IV FPGET++ F  T+ LV+++G+    +  YSPR GTP +
Sbjct: 292 RIVEQIRDIIPDAAISADAIVAFPGETEEQFENTLKLVEQVGFDLVNTAAYSPRPGTPAA 351

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWL 435
           N   Q+ E VK +RL  L   + +     +   +G+  EVLIE    +   +++GR+   
Sbjct: 352 NAPNQLSEEVKQDRLQRLNHLVAQMAADRSQRYLGRTEEVLIEATNPRNPQQVMGRTRTN 411

Query: 436 QSVVLNSKNHNI-GDIIKVRITDVKISTLYGELV 468
           + V  +     + G ++ VRIT+ +  +L G+++
Sbjct: 412 RLVFCDGTIAQLEGQLVPVRITETRAFSLTGQIL 445


>gi|319892314|ref|YP_004149189.1| tRNA-i(6)A37 methylthiotransferase [Staphylococcus pseudintermedius
           HKU10-03]
 gi|317162010|gb|ADV05553.1| tRNA-i(6)A37 methylthiotransferase [Staphylococcus pseudintermedius
           HKU10-03]
 gi|323464588|gb|ADX76741.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus
           pseudintermedius ED99]
          Length = 516

 Score =  447 bits (1151), Expect = e-123,   Method: Composition-based stats.
 Identities = 170/448 (37%), Positives = 264/448 (58%), Gaps = 15/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + F +K+YGCQMN +D+  M  +  + GY     ++ AD+I+LNTC IRE A  KV+  +
Sbjct: 70  RTFLIKTYGCQMNAHDTEVMAGILTALGYTPTEDVNTADVILLNTCAIRENAENKVFGEI 129

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G ++++K  R     D L+ V GC++Q E    +IL+    V+++ G    +RLP++LE 
Sbjct: 130 GNLKHIKQER----PDCLIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHRLPQILEE 185

Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           A   K +V   +S E D  E L  V     R+  + A++ I  GCDKFCT+C+VP+TRG 
Sbjct: 186 AYLSKAMVVEVWSKEGDVIENLPKV-----RQGRIKAWVNIMYGCDKFCTYCIVPFTRGK 240

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR    +++E R L   G  EITLLGQNVNA  GK ++  +    DLL  +S+I  + 
Sbjct: 241 ERSRRPEDIIEEVRDLARQGYQEITLLGQNVNA-YGKDIEDLEYGLGDLLADISKID-IP 298

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHP D +D +I+   +   ++P++HLPVQSG+D++LK M R++T   Y  ++ R
Sbjct: 299 RVRFTTSHPWDFTDRMIEVIAEGGNIVPHIHLPVQSGNDQVLKIMGRKYTRESYLDLVAR 358

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I++  PD+A+++D IVG+P ET+  F  T+ L + +G+  A+++ YS R GTP + M + 
Sbjct: 359 IKAAMPDVALTTDIIVGYPNETEAQFEETLSLYEAVGFEHAYTYLYSQRDGTPAAKMKDN 418

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVL 440
           V  +VK ERL  L + + E       A  G+ + VL E    K++  L G +   + V  
Sbjct: 419 VPTDVKKERLQRLNRLVGEYSSRALKAYEGETVRVLCEGASKKDEAVLAGYTEKNKLVNF 478

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
            +    IG I+ V+I + K  +L GE V
Sbjct: 479 RAPKSVIGKIVDVKIVEAKQYSLNGEFV 506


>gi|295135976|ref|YP_003586652.1| tRNA-i(6)A37 modification enzyme MiaB [Zunongwangia profunda
           SM-A87]
 gi|294983991|gb|ADF54456.1| tRNA-i(6)A37 modification enzyme MiaB [Zunongwangia profunda
           SM-A87]
          Length = 481

 Score =  447 bits (1150), Expect = e-123,   Method: Composition-based stats.
 Identities = 167/460 (36%), Positives = 251/460 (54%), Gaps = 22/460 (4%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
            ++ F++SYGCQMN  DS  +  +   +GY     +++ADL+++NTC IREKA + V   
Sbjct: 23  KRKLFIESYGCQMNFSDSEIVASILSKEGYNTTQQLEEADLVLVNTCSIREKAEQTVRKR 82

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           L +   +K    +   ++ V V GC+A+    + L    IV++VVGP  Y  LP L+   
Sbjct: 83  LEKYNAVK----RINPNMKVGVLGCMAERLKSKFLEEEKIVDLVVGPDAYKDLPNLINEV 138

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             G+  V+   S E+ +  +S V        GV+AF++I  GCD  CTFCVVP+TRG E 
Sbjct: 139 EEGRNAVNVILSKEETYGDISPVRLQ---TNGVSAFVSITRGCDNMCTFCVVPFTRGRER 195

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK-------------CTFSDL 250
           SR    +++E   L   G  EITLLGQNV+++   G   +K              +F+ L
Sbjct: 196 SRDPQSIIEEVNDLASRGYKEITLLGQNVDSYLWYGGGLKKDFKDATPMQKATATSFASL 255

Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
           L  ++E +  +R+R++TS+P+DM+  +I+       +  Y+HLPVQSGSD++LK MNR H
Sbjct: 256 LKMVAEAQPKMRIRFSTSNPQDMTLDVIEVMAAHRNICNYIHLPVQSGSDKMLKKMNRLH 315

Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370
           T  EY  +ID I+ + PD  IS D I GFP ET++D + T+ L+  + Y   F F YS R
Sbjct: 316 TREEYFTLIDNIKKLIPDCGISHDIITGFPTETEEDHKDTLSLMQYVKYDFGFMFAYSER 375

Query: 371 LGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KL 428
            GT  +    + V E  K  RL  +    +E         +G+ +EVLIEK  K+     
Sbjct: 376 PGTMAARKFEDDVPEETKKRRLTEIVNLQQEHSKYRTQQFIGKTVEVLIEKSSKKSDAHW 435

Query: 429 VGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            GR+     VV   +N+ +GD + V+I D   +TL GE +
Sbjct: 436 SGRNTQNTVVVFPKENYEVGDFVNVKINDCTSATLIGEPI 475


>gi|254391805|ref|ZP_05007000.1| methylase [Streptomyces clavuligerus ATCC 27064]
 gi|294815497|ref|ZP_06774140.1| Dimethylallyl adenosine tRNA methylthiotransferase miaB
           [Streptomyces clavuligerus ATCC 27064]
 gi|197705487|gb|EDY51299.1| methylase [Streptomyces clavuligerus ATCC 27064]
 gi|294328096|gb|EFG09739.1| Dimethylallyl adenosine tRNA methylthiotransferase miaB
           [Streptomyces clavuligerus ATCC 27064]
          Length = 506

 Score =  447 bits (1150), Expect = e-123,   Method: Composition-based stats.
 Identities = 178/464 (38%), Positives = 259/464 (55%), Gaps = 21/464 (4%)

Query: 13  MVSQIVDQCIVPQRFF-VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDD--ADLIVLNT 69
           M S    Q +  QR + +++YGCQMNV+DS R+  +    GY R     D  AD++V NT
Sbjct: 1   MTSSDRSQAVDVQRSYEIRTYGCQMNVHDSERLSGLLEEAGYVRAAEGSDGDADVVVFNT 60

Query: 70  CHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG 129
           C +RE A  K+Y  LGR+  +K  R      + + V GC+AQ + + I+ R+P V+VV G
Sbjct: 61  CAVRENADNKLYGNLGRLAPMKTRR----PGMQIAVGGCLAQKDRDTIVSRAPWVDVVFG 116

Query: 130 PQTYYRLPELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
                +LP LLERAR  +   V+   S+E     L        R+    A+++I  GC+ 
Sbjct: 117 THNIGKLPVLLERARVQEEAQVEIAESLEAFPSTLPT-----RRESAYAAWVSISVGCNN 171

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS 248
            CTFC+VP  RG E  R    ++ E   L+  GV EITLLGQNVNA  G  + G++  FS
Sbjct: 172 TCTFCIVPALRGKEKDRRPGDILAEIEALVAEGVSEITLLGQNVNA-YGSDI-GDREAFS 229

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
            LL +   I+GL R+R+T+ HPRD +D +I A  +   +MP LH+P+QSGSD +L++M R
Sbjct: 230 KLLRACGRIEGLERVRFTSPHPRDFTDDVIAAMAETPNVMPQLHMPLQSGSDAVLRAMRR 289

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
            +    +  IID++R   P  AIS+D IVGFPGET++DF  T+  V +  +A AF+F+YS
Sbjct: 290 SYRQERFLGIIDKVREAIPHAAISTDIIVGFPGETEEDFEQTLHTVREARFANAFTFQYS 349

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKG- 426
            R GTP + M  Q+ + V   R   L     E   + N   VG+++EV++ E  G++ G 
Sbjct: 350 KRPGTPAATMEGQLPKEVVQARYERLVVLQEEISWAENKKQVGRVLEVMVAEGEGRKDGA 409

Query: 427 --KLVGRSPWLQSVVL--NSKNHNIGDIIKVRITDVKISTLYGE 466
             +L GR+P  + V      +    GD++ V IT      L  E
Sbjct: 410 TQRLSGRAPDNRLVHFTKPEEEVRPGDVVTVEITYAAPHHLLAE 453


>gi|153954198|ref|YP_001394963.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Clostridium
           kluyveri DSM 555]
 gi|146347079|gb|EDK33615.1| Conserved hypothetical protein [Clostridium kluyveri DSM 555]
          Length = 444

 Score =  447 bits (1150), Expect = e-123,   Method: Composition-based stats.
 Identities = 168/454 (37%), Positives = 263/454 (57%), Gaps = 13/454 (2%)

Query: 18  VDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA 77
           ++     + FF+ +YGCQMN  DS ++  +    GY+R  +   ADLI+ NTC +RE A 
Sbjct: 1   MEDKFRNKSFFISTYGCQMNEEDSEKLSGILKKMGYKRAENKLSADLIIFNTCCVRENAE 60

Query: 78  EKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYR 135
            KVY  LG ++ LK    K+  +L++ + GC+ Q +G  E+++++ P V+++ G    Y+
Sbjct: 61  LKVYGNLGALKKLK----KQRPELIIALCGCMMQQKGMAEKVIKKFPFVDIIFGTHNAYK 116

Query: 136 LPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
            PE L R       V      ED       +D    R+  V AF+TI  GC+ FC +C+V
Sbjct: 117 FPEYLNRVNHQNVSVIEIQDKEDGIVEGVPID----RESSVKAFVTIMYGCNNFCAYCIV 172

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
           PY RG E SR    + +E ++L+  G  E+TLLGQNVN+  GK L+  +  FS+LL  ++
Sbjct: 173 PYVRGRERSRKPEDIENEIKELVSKGYKEVTLLGQNVNS-YGKNLNP-RVNFSELLRRIN 230

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
            + G+ R+R+ TSHP+D++D +I    + D +  ++HLPVQSGS RILK MNR ++  +Y
Sbjct: 231 NVDGIERIRFMTSHPKDLTDDVIDVISECDKICEHIHLPVQSGSTRILKKMNRNYSKEQY 290

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
             ++  I+   PD +I++D IVGFPGET++DF  T++L + + +  AF+F YS R GTP 
Sbjct: 291 LALVSEIKHKIPDASITTDIIVGFPGETEEDFEETLNLAEGVEFDSAFTFIYSKREGTPA 350

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPW 434
             + EQ+ ++VK ER   L + + +     N    G+I EVL+E   K +  KL+GR+  
Sbjct: 351 YKIEEQISDDVKHERFNRLVEVINKSAAKKNKVYEGRIEEVLVEGPSKNDSTKLMGRTRT 410

Query: 435 LQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            + V        IG+++KV IT     +L G  +
Sbjct: 411 GKLVNFQGDKAFIGELVKVEITKATSFSLLGRQI 444


>gi|294631817|ref|ZP_06710377.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Streptomyces sp. e14]
 gi|292835150|gb|EFF93499.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Streptomyces sp. e14]
          Length = 500

 Score =  447 bits (1150), Expect = e-123,   Method: Composition-based stats.
 Identities = 171/456 (37%), Positives = 257/456 (56%), Gaps = 20/456 (4%)

Query: 20  QCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDD--ADLIVLNTCHIREKAA 77
           +  V + + +++YGCQMNV+DS R+  +    GY R     D  AD++V NTC +RE A 
Sbjct: 52  EVGVTRSYEIRTYGCQMNVHDSERLAGLLEDAGYVRAPEGSDGDADVVVFNTCAVRENAD 111

Query: 78  EKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLP 137
            ++Y  LG +   K  R      + + V GC+AQ + + I++++P V+VV G     +LP
Sbjct: 112 NRLYGNLGHLAPKKAKR----PGMQIAVGGCLAQKDRDTIVKKAPWVDVVFGTHNIGKLP 167

Query: 138 ELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
            LLERAR  +   V+   S+E     L        R+    A+++I  GC+  CTFC+VP
Sbjct: 168 VLLERARVQEEAQVEIAESLEAFPSTLPT-----RRESAYAAWVSISVGCNNTCTFCIVP 222

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256
             RG E  R    ++ E   L+  GV EITLLGQNVNA  G  + G++  FS LL +   
Sbjct: 223 ALRGKEKDRRPGDILAEVEALVGEGVSEITLLGQNVNA-YGSDI-GDREAFSKLLRACGN 280

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           ++GL R+R+T+ HPRD +D +I A  +   +MP LH+P+QSGSD +LK+M R +    Y 
Sbjct: 281 VEGLERVRFTSPHPRDFTDDVIAAMAETPNVMPQLHMPLQSGSDTVLKAMRRSYRQERYL 340

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
            II+++R+  P  AI++D IVGFPGET++DF  T+ +V +  +AQAF+F+YS R GTP +
Sbjct: 341 GIIEKVRAAIPHAAITTDIIVGFPGETEEDFEQTLHVVREARFAQAFTFQYSKRPGTPAA 400

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKG---KLVGRS 432
            M +QV + V   R   L     E     N   VG+ +E+++ E  G++ G   +L GR+
Sbjct: 401 EMDDQVPKEVVQARYERLVALQEEISWEENKKQVGRTLELMVAEGEGRKDGATHRLSGRA 460

Query: 433 PWLQSVVL--NSKNHNIGDIIKVRITDVKISTLYGE 466
           P  + V      +    GD++ V IT      L  E
Sbjct: 461 PDNRLVHFTKPDEEVRPGDVVTVEITYAAPHHLLAE 496


>gi|295836161|ref|ZP_06823094.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Streptomyces sp. SPB74]
 gi|197695257|gb|EDY42190.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Streptomyces sp. SPB74]
          Length = 513

 Score =  447 bits (1150), Expect = e-123,   Method: Composition-based stats.
 Identities = 170/452 (37%), Positives = 256/452 (56%), Gaps = 21/452 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNS---MDDADLIVLNTCHIREKAAEKVY 81
           + + +++YGCQMNV+DS R+  +    GY R        DAD++V NTC +RE A  ++Y
Sbjct: 20  RTYEIRTYGCQMNVHDSERLAGLLEGAGYVRAPESAGDSDADVVVFNTCAVRENADNRLY 79

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR+   K  R      + + V GC+AQ + + I+ R+P V+VV G     +LP LLE
Sbjct: 80  GNLGRLAPKKTER----PGMQIAVGGCLAQKDRQTIVDRAPWVDVVFGTHNIGKLPVLLE 135

Query: 142 RARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           RAR  +   V+   S+E     L        R+    A++++  GC+  CTFC+VP  RG
Sbjct: 136 RARVQEEAQVEIAESLEAFPSTLPT-----RRESAYAAWVSVSVGCNNTCTFCIVPALRG 190

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E  R    ++ E   L+  GV EITLLGQNVNA  G  + G++  FS LL +   ++GL
Sbjct: 191 KEKDRRPGDILAEVEALVAEGVSEITLLGQNVNA-YGSDI-GDREAFSKLLRACGRVEGL 248

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+T+ HPRD +D +I A  +   +MP LH+P+QSGSD +L++M R +    Y  II+
Sbjct: 249 ERVRFTSPHPRDFTDDVIAAMAETPNVMPQLHMPLQSGSDTVLRAMRRSYRQDRYLGIIE 308

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R+  PD AIS+D IVGFPGET++DF  T+ +V +  +A AF+F+YS R GTP + M +
Sbjct: 309 KVRAAIPDAAISTDIIVGFPGETEEDFEQTLHVVREARFAAAFTFQYSKRPGTPAAEMDD 368

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKG---KLVGRSPWLQ 436
           Q+ + V  +R   L     E     N   VG+ ++V++ E  G++ G   +L GR+P  +
Sbjct: 369 QIPKEVVQKRYERLVALQEEISWEENKKQVGRTLDVMVAEGEGRKDGATQRLSGRAPDNR 428

Query: 437 SVVL--NSKNHNIGDIIKVRITDVKISTLYGE 466
            V      +    GD++ V IT      L  E
Sbjct: 429 LVHFTKPQEPVRPGDVVTVDITYAAPHHLLAE 460


>gi|296171751|ref|ZP_06852910.1| tRNA-I(6)A37 thiotransferase [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295893980|gb|EFG73745.1| tRNA-I(6)A37 thiotransferase [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 495

 Score =  447 bits (1150), Expect = e-123,   Method: Composition-based stats.
 Identities = 167/452 (36%), Positives = 259/452 (57%), Gaps = 19/452 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + + V++YGCQMNV+DS R+  +  + GY+R     DAD++V NTC +RE A  K+Y  L
Sbjct: 5   RTYQVRTYGCQMNVHDSERLAGLLEAAGYQRAVDGSDADVVVFNTCAVRENADNKLYGNL 64

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             +   K        ++ + V GC+AQ + + +LR++P V+VV G      LP LLERAR
Sbjct: 65  SHLAPRKRG----NPEMQIAVGGCLAQKDRDAVLRKAPWVDVVFGTHNIGSLPTLLERAR 120

Query: 145 FGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             K   V+   S+++    L        R+    A++++  GC+  CTFC+VP  RG E+
Sbjct: 121 HNKAAQVEIAESLQEFPSSLPSA-----RESAYAAWVSVSVGCNNSCTFCIVPSLRGKEV 175

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG----EKCTFSDLLYSLSEIKG 259
            RS + V+ E R L+ +GV E+TLLGQNVNA+     D     ++  F+ LL +   I G
Sbjct: 176 DRSPADVLAEVRALVADGVVEVTLLGQNVNAYGVSFADPALPRDRGAFARLLRACGNIDG 235

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           L R+R+T+ HP + +D +I+A      + P LH+P+QSGSDR+L++M R + A  Y  II
Sbjct: 236 LERVRFTSPHPAEFTDDVIEAMAQTPNVCPALHMPLQSGSDRVLRAMRRSYRAERYLGII 295

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
           DR+R+  P+ AI++D IVGFPGET++DF AT+D+V +  +A AF+F+YS R GTP + + 
Sbjct: 296 DRVRAAMPNAAITTDLIVGFPGETEEDFAATLDVVRQARFAAAFTFQYSKRPGTPAAELD 355

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI---EK-HGKEKGKLVGRSPWL 435
            Q+ + V  ER   L +   +  +  N A VGQ +E+L+   E        ++ GR+   
Sbjct: 356 GQLPKTVVQERYDRLIELQEQISLEGNRALVGQTVELLVAAGEGRKDTRTARMTGRARDG 415

Query: 436 QSVVLNSKN-HNIGDIIKVRITDVKISTLYGE 466
           + V   + +    GD +  +IT      L  +
Sbjct: 416 RLVHFGADDRVRPGDFVTAKITQAAPHHLIAD 447


>gi|85859266|ref|YP_461468.1| tRNA 2-methylthioadenosine synthase [Syntrophus aciditrophicus SB]
 gi|123725257|sp|Q2LT94|MIAB_SYNAS RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|85722357|gb|ABC77300.1| tRNA 2-methylthioadenosine synthase [Syntrophus aciditrophicus SB]
          Length = 461

 Score =  447 bits (1150), Expect = e-123,   Method: Composition-based stats.
 Identities = 180/448 (40%), Positives = 275/448 (61%), Gaps = 14/448 (3%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
            +  ++++ GCQMNV+DS ++  +   +GY      ++ADLI+LNTC IREKAA+K  S 
Sbjct: 17  KKHIYIQTLGCQMNVHDSEQIAALMEEKGYICTEDANEADLIILNTCSIREKAAQKAKSQ 76

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR RNLK        +LL+ V GC+AQ  G+E+L + P ++ + G    ++LP+ + R 
Sbjct: 77  LGRYRNLKRK----KRNLLIGVGGCLAQQLGDELLTKVPDIDFIFGTHNIHQLPDFISRI 132

Query: 144 RFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
              ++  V  T +        L++   G      V++F+TI +GC+ FC++C+VPY RG 
Sbjct: 133 EKSRKKIVETTLHPSTPSIGVLALPCNG-----QVSSFVTIMQGCNNFCSYCIVPYVRGR 187

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR    ++ E R L D+GV E+TLLGQNVN++  K     +  F++LL  + +IKG+ 
Sbjct: 188 EESRPPEDIIHEIRMLADHGVKEVTLLGQNVNSYARKTS--GEMGFAELLREIEKIKGIE 245

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHP+D+S+ LI A  DL  L  ++HLP QSGSDRIL  MNR +T  +Y   ++R
Sbjct: 246 RMRFTTSHPKDLSEFLITAFSDLSKLCHHIHLPFQSGSDRILALMNRGYTKSDYLAKVER 305

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R+V PDI+I++D IVGFPGE+D+DF+ T+D++++I +   FSFKYS R GT    M  +
Sbjct: 306 LRTVCPDISITADVIVGFPGESDEDFKETIDMMNQIRFDNLFSFKYSEREGTAAVKMDGK 365

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRSPWLQSVVL 440
           V E +K ERL  LQ    +  +  N A  G+  +VL+E   K  +  L GR+   + V  
Sbjct: 366 VSEPLKLERLQILQALQEQHTLEKNKAMEGKQEDVLVEGFSKNCRKDLTGRTSTNKIVNF 425

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
           +     IGD++ V I +  + +L GE++
Sbjct: 426 SGCVDLIGDMVSVLIKEAYLHSLRGEML 453


>gi|329736221|gb|EGG72493.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
           epidermidis VCU028]
          Length = 514

 Score =  447 bits (1149), Expect = e-123,   Method: Composition-based stats.
 Identities = 169/448 (37%), Positives = 263/448 (58%), Gaps = 15/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + F +K+YGCQMN +D+  M  +  + GY   + +++AD+I++NTC IRE A  KV+S +
Sbjct: 68  RTFLIKTYGCQMNAHDTEVMAGILNALGYSATSDINEADVILINTCAIRENAENKVFSEI 127

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G +++LK    KE  D L+ V GC++Q E    +IL+    V++V G    + LPE+LE 
Sbjct: 128 GNLKHLK----KERPDCLIGVCGCMSQEESVVNKILKSYQNVDMVFGTHNIHHLPEILEE 183

Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           A   K +V   +S E D  E L  V  G+     + A++ I  GCDKFCT+C+VP+TRG 
Sbjct: 184 AYLSKAMVVEVWSKEGDIIENLPKVRDGH-----IKAWVNIMYGCDKFCTYCIVPFTRGK 238

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR    ++DE R+L   G  EITLL QNVN+  GK ++G      DLL  +S+I  + 
Sbjct: 239 ERSRRPEDIIDEVRELAREGYQEITLLDQNVNS-YGKDIEGLDYELGDLLEDISKID-IP 296

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHP D +D +I+       ++P++HLPVQSG++++LK M R++T   Y  ++ R
Sbjct: 297 RVRFTTSHPWDFTDRMIEVIAKGGNIVPHIHLPVQSGNNQVLKIMGRKYTRESYLDLVSR 356

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I+   P++A+++D IVG+P ET++ F  T+ L D + +  A+++ YS R GTP + M + 
Sbjct: 357 IKEAIPNVALTTDIIVGYPNETEEQFEETLSLYDDVQFEHAYTYLYSQRDGTPAAKMKDN 416

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVL 440
           V   VK ERL  L KK+            G+I+ VL E    K++  L G +   + V  
Sbjct: 417 VPLEVKKERLQRLNKKVGIYSQQAMSQYEGKIVTVLCEGSSKKDENVLAGYTDKNKLVNF 476

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                +IG ++ V+I + K  +L G  +
Sbjct: 477 KGPRESIGKLVDVKIDEAKQYSLNGTFI 504


>gi|320008158|gb|ADW03008.1| RNA modification enzyme, MiaB family [Streptomyces flavogriseus
           ATCC 33331]
          Length = 506

 Score =  447 bits (1149), Expect = e-123,   Method: Composition-based stats.
 Identities = 178/453 (39%), Positives = 260/453 (57%), Gaps = 20/453 (4%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDD--ADLIVLNTCHIREKAAEKV 80
           V + + V++YGCQMNV+DS R+  +    GY R     D  AD++V NTC +RE A  K+
Sbjct: 12  VQKSYEVRTYGCQMNVHDSERLSGLLEGAGYVRAPEGSDGDADVVVFNTCAVRENADNKL 71

Query: 81  YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140
           Y  LGR+  +K  R      + + V GC+AQ + + I+RR+P V+VV G     +LP LL
Sbjct: 72  YGNLGRLAPMKTKR----PGMQIAVGGCLAQKDRDTIVRRAPWVDVVFGTHNIGKLPVLL 127

Query: 141 ERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           ERAR  +   V+   S+E     L        R+    A+++I  GC+  CTFC+VP  R
Sbjct: 128 ERARVQEEAQVEIAESLEAFPSTLPT-----RRESAYAAWVSISVGCNNTCTFCIVPALR 182

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G E  R    ++ E   L+  GV EITLLGQNVNA  G  + G++  FS LL +   I+G
Sbjct: 183 GKEKDRRTGDILAEIEALVAEGVSEITLLGQNVNA-YGSDI-GDREAFSKLLRACGTIEG 240

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           L R+R+T+ HPRD +D +I A  +   +MP LH+P+QSGSD ILK+M R +    +  II
Sbjct: 241 LERVRFTSPHPRDFTDDVIAAMAETPNVMPQLHMPMQSGSDTILKAMRRSYRQERFLGII 300

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
           +++R+  PD AIS+D IVGFPGET++DF  TM  V +  +A AF+F+YS R GTP + M 
Sbjct: 301 EKVRAAMPDAAISTDIIVGFPGETEEDFEQTMHAVREARFANAFTFQYSKRPGTPAAEME 360

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKG---KLVGRSPWL 435
            Q+ + V  ER + L     +     N   VG+ ++V++ E  G++ G   +L GR+P  
Sbjct: 361 GQIPKEVVQERYMRLSALQEQISWDENKKQVGRTLDVMVAEGEGRKDGATHRLSGRAPDN 420

Query: 436 QSVVL--NSKNHNIGDIIKVRITDVKISTLYGE 466
           + V     S++   GD++ V I+      L  E
Sbjct: 421 RLVHFTKPSEDVRPGDVVTVEISYAAPHHLLAE 453


>gi|297202829|ref|ZP_06920226.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Streptomyces sviceus ATCC
           29083]
 gi|297148220|gb|EFH28901.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Streptomyces sviceus ATCC
           29083]
          Length = 508

 Score =  447 bits (1149), Expect = e-123,   Method: Composition-based stats.
 Identities = 174/452 (38%), Positives = 256/452 (56%), Gaps = 20/452 (4%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDD--ADLIVLNTCHIREKAAEKVY 81
           P+ + V++YGCQMNV+DS R+  +    GY       D  AD++V NTC +RE A  ++Y
Sbjct: 16  PKTYEVRTYGCQMNVHDSERLSGLLEEAGYVPAPEGSDGDADVVVFNTCAVRENADNRLY 75

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR+   K SR      + + V GC+AQ + + I++R+P V+VV G     +LP LLE
Sbjct: 76  GNLGRLAPRKASR----PGMQIAVGGCLAQKDRDTIVQRAPWVDVVFGTHNIGKLPVLLE 131

Query: 142 RARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           RAR  +   V+   S+E     L        R+    A+++I  GC+  CTFC+VP  RG
Sbjct: 132 RARVQEEAQVEIAESLEAFPSTLPT-----RRESAYAAWVSISVGCNNTCTFCIVPALRG 186

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E  R    ++ E   L+  GV EITLLGQNVNA  G  + G++  FS LL +   I+GL
Sbjct: 187 KEKDRRTGDILAEIEALVGEGVSEITLLGQNVNA-YGSDI-GDREAFSKLLRACGSIEGL 244

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+T+ HPRD +D +I+A  +   +MP LH+P+QSGSD +LK+M R +    Y  II+
Sbjct: 245 ERVRFTSPHPRDFTDDVIEAMAETPNVMPQLHMPLQSGSDTVLKAMRRSYRQERYLGIIE 304

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R+  PD AIS+D IVGFPGET++DF  TM +V +  +  AF+F+YS R GTP + M  
Sbjct: 305 KVRAAMPDAAISTDIIVGFPGETEEDFEQTMHVVRQARFTNAFTFQYSKRPGTPAATMDG 364

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKG---KLVGRSPWLQ 436
           Q+ + +   R   L     E     N   VG+ +E+++ E  G++ G   +L GR+P  +
Sbjct: 365 QIPKEIVQSRYERLVALQEEISWEENKKQVGRTLELMVAEGEGRKDGATHRLSGRAPDNR 424

Query: 437 SVVL--NSKNHNIGDIIKVRITDVKISTLYGE 466
            V      +    GD++ V IT      L  E
Sbjct: 425 LVHFTKPDQEVRPGDVVTVEITYAAPHHLLAE 456


>gi|260907232|ref|ZP_05915554.1| RNA modification enzyme, MiaB family protein [Brevibacterium linens
           BL2]
          Length = 498

 Score =  447 bits (1149), Expect = e-123,   Method: Composition-based stats.
 Identities = 165/459 (35%), Positives = 257/459 (55%), Gaps = 15/459 (3%)

Query: 13  MVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHI 72
           ++         P+ + VK+YGCQMNV+DS R+  +    GY   ++ D AD+IV NTC +
Sbjct: 4   LIDAPTSTESSPRSYEVKTYGCQMNVHDSERLSGLLDDAGYVPADTDDQADVIVFNTCAV 63

Query: 73  REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT 132
           RE A  ++Y  LG++ ++K        D  + V GC+AQ + + I++++P V+VV G   
Sbjct: 64  RENADNRLYGNLGQLAHVKER----NPDFQIAVGGCMAQKDRDTIVKKAPWVDVVFGTHN 119

Query: 133 YYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTF 192
              LP LLERAR  +          D F           R+   + +++I  GC+  CTF
Sbjct: 120 MGSLPALLERARHNQEAQVEILESLDVF----PSTLPSRRESQHSGWVSISVGCNNSCTF 175

Query: 193 CVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLY 252
           C+VP  RG E  R    ++ E   L+ +GV E+TLLGQNVN++  +  D  K  F+ LL 
Sbjct: 176 CIVPSLRGKEKDRRPGDILAEVEALVADGVVEVTLLGQNVNSYGSEFRD--KGAFAKLLR 233

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
           ++ +++G+ R+R+T+ HP   SD +I A  +   +MP LH+P+QSGSD ILKSM R +  
Sbjct: 234 AVGKVEGIERVRFTSPHPASFSDDVIDAMAETPAVMPQLHMPLQSGSDSILKSMRRSYRT 293

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
             + +I+D +R   P+ AI++D IVGFPGET++DF  TMD+V +  ++QAF+F+YS R G
Sbjct: 294 SRFMRILDSVREKIPNAAITTDIIVGFPGETEEDFLGTMDIVRRARFSQAFTFQYSIRPG 353

Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKGKLVGR 431
           TP + M +QV +++  ER   L     E     N A +G+ +EVL+  +   +  +L GR
Sbjct: 354 TPAATMDDQVPKHIVQERFERLTALQDEISWEENTAQIGREVEVLVTTRPHDDSPRLTGR 413

Query: 432 SPWLQSVVLNSKN----HNIGDIIKVRITDVKISTLYGE 466
           S   + V +   +       GD +   +TD K   L  +
Sbjct: 414 SADNRLVHVGIPDGEQMPRPGDFVTATVTDAKPFFLLAD 452


>gi|332879166|ref|ZP_08446867.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Capnocytophaga sp. oral
           taxon 329 str. F0087]
 gi|332682966|gb|EGJ55862.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Capnocytophaga sp. oral
           taxon 329 str. F0087]
          Length = 482

 Score =  447 bits (1149), Expect = e-123,   Method: Composition-based stats.
 Identities = 169/459 (36%), Positives = 253/459 (55%), Gaps = 22/459 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ +++SYGCQMN  DS  +  +    GY   +S+DDADL+++NTC +R+KA + +   L
Sbjct: 24  KKLYIESYGCQMNFSDSEIVASILSKVGYNTTDSVDDADLVLINTCSVRDKAEQTIRKRL 83

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            +    K         + V V GC+A+      L    IV++VVGP  Y  LP LLE   
Sbjct: 84  EQFNVYKRK----KPAMKVGVLGCMAERVKHAFLEEEKIVDMVVGPDAYKDLPNLLEEVE 139

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G+  V+   S ++ +  ++ +        GVTAF++I  GCD  CTFC+VP+TRG E S
Sbjct: 140 GGREAVNVILSKDETYADIAPIRLN---SNGVTAFVSITRGCDNMCTFCIVPFTRGRERS 196

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK-------------CTFSDLL 251
           R    +++E   L   G  E+TLLGQNV+++   G   +K               F+ LL
Sbjct: 197 RDPFSIINEIGDLQARGFKEVTLLGQNVDSYLWYGGGLKKDFSKATEMQQATAINFAKLL 256

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
             ++     +R+R++TS+P+DM+  +I        +  Y+HLPVQSGS+RILK+MNR HT
Sbjct: 257 DMVATAYPKMRIRFSTSNPQDMTFEVIDTMAKHHNICKYIHLPVQSGSNRILKAMNRMHT 316

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
             EY  +ID IR   PD AIS D I GFP ET++D R T+ L++ + Y   F F YS R 
Sbjct: 317 REEYFALIDGIRQRIPDCAISQDMITGFPTETEEDHRDTLSLMEYVKYDFGFMFAYSERP 376

Query: 372 GTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LV 429
           GT  +  +++ V E VK  RL  +    +   +    A VG  +EVLIE + K+  +  +
Sbjct: 377 GTLAARKIVDDVPEEVKKRRLTEIIDLQQAHSLYRTQAQVGNTVEVLIEGNSKKSDQEWM 436

Query: 430 GRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           GR+     VV   +++ IGD + V+ITD   +TL G+ V
Sbjct: 437 GRNSQNTVVVFPKEDYKIGDFVMVKITDCTSTTLIGKAV 475


>gi|34540755|ref|NP_905234.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Porphyromonas
           gingivalis W83]
 gi|81416611|sp|Q7MAW4|MIAB_PORGI RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|34397069|gb|AAQ66133.1| tRNA-i(6)A37 modification enzyme MiaB [Porphyromonas gingivalis
           W83]
          Length = 463

 Score =  447 bits (1149), Expect = e-123,   Method: Composition-based stats.
 Identities = 161/446 (36%), Positives = 255/446 (57%), Gaps = 8/446 (1%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ ++++YGCQMNV DS  +  +    GY   +++D+AD I++NTC +R+ A +KV + L
Sbjct: 18  RKLYIETYGCQMNVADSEVVASVMQMDGYNLTDNVDEADTILVNTCSVRDNAEQKVLNRL 77

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
               +L+    +    L++ V GC+A+   EE++R    V+VV GP +Y  LP L+  A 
Sbjct: 78  AYYHSLRKK-RRASSRLVIGVLGCMAERVKEELIREH-HVDVVAGPDSYLDLPNLVGAAE 135

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G++ ++ + S ++ ++ +  +  G     G   F++I  GC+ FC++C+VPYTRG E S
Sbjct: 136 QGEKAINVELSTQETYKDVMPLKMGGVHING---FVSIMRGCNNFCSYCIVPYTRGRERS 192

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R +  +++E R L      E+TLLGQNVN++R +  +G    F DLL +++E    +R+R
Sbjct: 193 REIESILNEVRDLKAKNFREVTLLGQNVNSYRYE-QNGRIIRFPDLLAAVAEAVPDMRIR 251

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +T+ HP+DM D  I        +  ++HLP QSGSD++L+ M R +T   Y   +  IR 
Sbjct: 252 FTSPHPKDMDDEAIAVMARYRNICNHIHLPAQSGSDKMLRVMKRGYTRRWYLDRVAAIRR 311

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN-MLEQVD 383
             PD AISSD   GF  ET++DF AT+ L++++ Y  AF FKYS R GT  +  + + V 
Sbjct: 312 AIPDCAISSDLFCGFHSETEEDFEATLSLMEEVRYDSAFMFKYSERPGTYAARHLADDVP 371

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNS 442
           E VK  RL  +           N   +G+  EVLIE   K    +L GR+   + V+ + 
Sbjct: 372 EEVKLSRLDRMIALQNRLSEESNKRDIGKTFEVLIEGFSKRSREQLFGRTQQNKVVIFDK 431

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
             H +G  I VRI D   +TL+GE+V
Sbjct: 432 NGHRVGQYIYVRIKDASSATLFGEVV 457


>gi|228475022|ref|ZP_04059750.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus hominis
           SK119]
 gi|228271007|gb|EEK12395.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus hominis
           SK119]
          Length = 514

 Score =  446 bits (1148), Expect = e-123,   Method: Composition-based stats.
 Identities = 164/448 (36%), Positives = 264/448 (58%), Gaps = 15/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + F +K+YGCQMN +D+  M  +  +  Y+  + +++AD+I++NTC IRE A  KV+S +
Sbjct: 68  RTFLIKTYGCQMNAHDTEVMAGILQALDYQATDDINEADVILINTCAIRENAENKVFSEI 127

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G +++LK    K   + L+ V GC++Q E    +IL+    V+++ G    ++LPE+LE 
Sbjct: 128 GNLKHLK----KNRPETLIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHKLPEILEE 183

Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           A   K +V   +S E D  E L  V     R+    A++ I  GCDKFCT+C+VP+TRG 
Sbjct: 184 AYLSKAMVVEVWSKEGDVIENLPKV-----REGSTKAWVNIMYGCDKFCTYCIVPFTRGK 238

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR    +++E R+L   G  EITLLGQNVN+  GK +       SDLL  +S+I  + 
Sbjct: 239 ERSRRPQDIIEEVRELAREGYKEITLLGQNVNS-YGKDIKDLDYGLSDLLEDISKID-IP 296

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHP D +D +I+       ++P++HLPVQSG++ +LK M R+++   Y  ++DR
Sbjct: 297 RVRFTTSHPWDFTDRMIEVIAKGGNIVPHIHLPVQSGNNAVLKIMGRKYSRESYLDLVDR 356

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I+   P++A+++D IVG+P ET++ F  T+ L D++ +  A+++ YS R GTP + M + 
Sbjct: 357 IKEAIPNVALTTDIIVGYPNETEEQFEETLSLYDEVQFEHAYTYLYSQRDGTPAAKMKDN 416

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVL 440
           V   VK +RL  L KK+ +          GQ++ VL E    K++  L G +   + V  
Sbjct: 417 VPTEVKKDRLQRLNKKVGQYSEKAMQNYEGQVVTVLCEGTSKKDETVLAGYTEKNKLVNF 476

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 IG ++ V++ + K  +L GE +
Sbjct: 477 KGPREAIGQLVDVKVKEAKQYSLNGEFL 504


>gi|183981993|ref|YP_001850284.1| hypothetical protein MMAR_1979 [Mycobacterium marinum M]
 gi|229890404|sp|B2HL08|MIAB2_MYCMM RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB 2; AltName: Full=tRNA-i(6)A37 methylthiotransferase
           2
 gi|183175319|gb|ACC40429.1| conserved hypothetical protein [Mycobacterium marinum M]
          Length = 532

 Score =  446 bits (1148), Expect = e-123,   Method: Composition-based stats.
 Identities = 168/458 (36%), Positives = 263/458 (57%), Gaps = 20/458 (4%)

Query: 20  QCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEK 79
           + +  + + V++YGCQMNV+DS RM  +  + GY R     DAD++V NTC +RE A  K
Sbjct: 19  EPMSARTYQVRTYGCQMNVHDSERMAGLLEAAGYRRAAEGTDADVVVFNTCAVRENADNK 78

Query: 80  VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL 139
           +Y  L  +   K    +   D+ + V GC+AQ + + +LR++P V+VV G      LP L
Sbjct: 79  LYGNLSHLAPRK----RTSPDMQIAVGGCLAQKDRDALLRKAPWVDVVFGTHNIGSLPAL 134

Query: 140 LERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
           L+RAR  +   V+   +++     L        R+    A+++I  GC+  CTFC+VP  
Sbjct: 135 LDRARHNRVAQVEIAEALQQFPSSLPSA-----RESAYAAWVSISVGCNNTCTFCIVPSL 189

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG----EKCTFSDLLYSL 254
           RG EI RS + ++ E + L+D GV EITLLGQNVNA+     D      +  F++LL + 
Sbjct: 190 RGKEIDRSPADILAEVQSLVDTGVVEITLLGQNVNAYGVSFADPALPRNRGAFAELLRAC 249

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
            +I GL R+R+T+ HP + +D +I+A      + P LH+P+QSGSDR+L++M R + A  
Sbjct: 250 GDIDGLERVRFTSPHPAEFTDDVIEAMAQTPNVCPALHMPLQSGSDRVLRAMRRSYRAER 309

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
           Y  II+R+R+  P  AI++D IVGFPGET+ DF AT+D+V +  ++ AF+F+YS R GTP
Sbjct: 310 YLGIIERVRAAMPHAAITTDLIVGFPGETEQDFAATLDVVRQARFSAAFTFQYSKRPGTP 369

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEK---GKLVG 430
            + +  Q+ + V  ER   L +   +  +  N A VGQ +E+L+    G++     ++ G
Sbjct: 370 AAELDGQLPKAVVQERYERLVELQEQISLEGNRAIVGQRVELLVATGEGRKDTLTARMSG 429

Query: 431 RSPWLQSVVLNSKN--HNIGDIIKVRITDVKISTLYGE 466
           R+   + V   + +     GDI+ V +TD     L  +
Sbjct: 430 RARDGRLVHFRAGDGPVRPGDIVTVEVTDAAPHHLIAD 467


>gi|291279773|ref|YP_003496608.1| tRNA-i(6)A37 thiotransferase enzyme [Deferribacter desulfuricans
           SSM1]
 gi|290754475|dbj|BAI80852.1| tRNA-i(6)A37 thiotransferase enzyme [Deferribacter desulfuricans
           SSM1]
          Length = 439

 Score =  446 bits (1148), Expect = e-123,   Method: Composition-based stats.
 Identities = 185/445 (41%), Positives = 277/445 (62%), Gaps = 14/445 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + F+K++GCQMN YDS R+  +F  +GY   +++++A   V+NTC +REK   KV S LG
Sbjct: 2   KLFIKTFGCQMNEYDSERIAAIFQERGYSLTDNLEEASFAVINTCSVREKPYHKVESELG 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R++  K    K   D  + V GCVAQ +GE+ L R   V++V G     RL  L++    
Sbjct: 62  RLKKFK----KLNPDFKIAVCGCVAQQDGEKFLDRFDYVDLVFGTSAIDRLHSLIDLVEK 117

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G+R+ DT    ++      +    + R + V+AF+TI +GCD FC++C+VPY RG E SR
Sbjct: 118 GERICDTSEGDDE------LSIPVFGRGKKVSAFVTIMKGCDNFCSYCIVPYVRGREKSR 171

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
             S+++DE + L++NGV E+TLLGQNVN+  GKGLD E   F  LLY + +I GL R+R+
Sbjct: 172 KPSEILDEIKYLVNNGVKEVTLLGQNVNS-YGKGLD-EDINFPKLLYKVHDINGLERIRF 229

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
            TSHP+D  D LI A  DL  +  YLHLP+Q+GS+++LK MNR++T  EYR  + + + +
Sbjct: 230 VTSHPKDFDDELIFAIRDLPKVCEYLHLPLQAGSNKVLKMMNRKYTYEEYRDKVLKAKEM 289

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            PD+A+SSDFIVGFPGET +DF  T+  + +I Y   F+FKYSPR  T  SN ++ + ++
Sbjct: 290 IPDLALSSDFIVGFPGETVEDFAETLKAIKEIRYESIFAFKYSPRPKTKASNFVDDITDD 349

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRSPWLQSVVLNSK- 443
            K+ RL  L     +     N + VG++ E+L+E   K+ + +  GR+   + V + S  
Sbjct: 350 EKSRRLNELLSIQSKITEEINKSYVGKVQEILVEGKSKKGENQFSGRNRQNKVVNILSNH 409

Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468
             NIGDI+ V I + K ++L  ++V
Sbjct: 410 KLNIGDIVTVEIVEAKKNSLLAKIV 434


>gi|257056745|ref|YP_003134577.1| (dimethylallyl)adenosine tRNA methylthiotransferase
           [Saccharomonospora viridis DSM 43017]
 gi|256586617|gb|ACU97750.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Saccharomonospora viridis
           DSM 43017]
          Length = 494

 Score =  446 bits (1148), Expect = e-123,   Method: Composition-based stats.
 Identities = 159/454 (35%), Positives = 249/454 (54%), Gaps = 20/454 (4%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + + + ++++GCQMNV+DS R+       GY      + AD++VLNTC +RE A  K+Y 
Sbjct: 1   MTRTYTIRTFGCQMNVHDSERLAGQLEEAGYSLAAEGEQADVVVLNTCAVRENADNKLYG 60

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            LG +R  K +       + + V GC+AQ +  EI+RR+P V+VV G      LP LLER
Sbjct: 61  HLGHLRAAKAA----NPGMQIAVGGCLAQKDRGEIVRRAPWVDVVFGTHNLGSLPVLLER 116

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           AR             + F           R+   + +++I  GC+  CTFC+VP  RG E
Sbjct: 117 ARHNAEAQVEIVEALETFPSTLPAR----RESAYSGWVSISVGCNNTCTFCIVPSLRGKE 172

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
             R   +++ E   L+  GV E+TLLGQNVN++  +   G++  F  LL S   I GL R
Sbjct: 173 RDRRPGEILAEVEALVAEGVLEVTLLGQNVNSYGVEF--GDRYAFGKLLRSCGSIDGLER 230

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+T+ HP   +D +I A  +   +   LH+P+QSGSDR+LK+M R + +  +  I+D++
Sbjct: 231 VRFTSPHPAAFTDDVIDAMAETPNVCHQLHMPLQSGSDRVLKAMRRSYRSARFLSILDKV 290

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+  PD AI++D IVGFPGET++DF+ T+++V +  ++ AF+F+YSPR GTP + M +QV
Sbjct: 291 RAAMPDAAITTDIIVGFPGETEEDFQQTLEVVRQARFSSAFTFQYSPRPGTPAAEMPDQV 350

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKG---KLVGRSPWLQSV 438
            + V  ER   L +   +     N   VG  +E+L+    G++     ++ GR+   + V
Sbjct: 351 PKEVVQERYDRLVELQNDISWQENRKLVGTTVELLVATGEGRKDAETHRMSGRARDGRLV 410

Query: 439 VLNSKNHNI------GDIIKVRITDVKISTLYGE 466
               +   I      GDI++  IT      L  +
Sbjct: 411 HFTPRGDAIDRKIRPGDIVETTITYAAPHHLVAD 444


>gi|291454555|ref|ZP_06593945.1| RNA modification enzyme [Streptomyces albus J1074]
 gi|291357504|gb|EFE84406.1| RNA modification enzyme [Streptomyces albus J1074]
          Length = 505

 Score =  446 bits (1148), Expect = e-123,   Method: Composition-based stats.
 Identities = 172/452 (38%), Positives = 259/452 (57%), Gaps = 21/452 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNS---MDDADLIVLNTCHIREKAAEKVY 81
           + + V++YGCQMNV+DS R+  +    GY R        DAD++V NTC +RE A  ++Y
Sbjct: 42  KTYEVRTYGCQMNVHDSERLAGLLEGAGYVRSPEGTEEGDADVVVFNTCAVRENADNRLY 101

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR+  +K  R      + + V GC+AQ + + I +R+P V+VV G     +LP LLE
Sbjct: 102 GNLGRLAPMKTRR----PGMQIAVGGCLAQKDRDTITKRAPWVDVVFGTHNIGKLPVLLE 157

Query: 142 RARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           RAR  +   V+   S+E     L        R+    A++++  GC+  CTFC+VP  RG
Sbjct: 158 RARVQEEAQVEIAESLEAFPSTLPT-----RRESAYAAWVSVSVGCNNTCTFCIVPALRG 212

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E  R    ++ E   L+  GV EITLLGQNVNA  G  + G++  FS LL +  +I+GL
Sbjct: 213 KEKDRRTGDILAEVEALVAEGVSEITLLGQNVNA-YGSDI-GDRQAFSKLLRACGKIEGL 270

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+T+ HPRD +D +I A  +   +MP LH+P+QSGSD +L++M R +    +  II+
Sbjct: 271 ERVRFTSPHPRDFTDDVIAAMAETPNVMPQLHMPLQSGSDTVLRAMRRSYRQERFLSIIE 330

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R+  PD AI++D IVGFPGET++DF+ T+  V +  +AQAF+F+YS R GTP + M  
Sbjct: 331 KVRAAIPDAAITTDIIVGFPGETEEDFQQTLHTVREARFAQAFTFQYSKRPGTPAAEMDG 390

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKG---KLVGRSPWLQ 436
           Q+ + V  ER + L     E     N    G+++EV++ E  G++ G   +L GR+P  +
Sbjct: 391 QIPKEVVQERYMRLVALQEEISWEENKKQTGRVLEVMVAEGEGRKDGATRRLSGRAPDNR 450

Query: 437 SVVL--NSKNHNIGDIIKVRITDVKISTLYGE 466
            V      +    GD++ V IT      L  E
Sbjct: 451 LVHFTKPDEEVRPGDVVTVEITYAAPHHLLAE 482


>gi|255525224|ref|ZP_05392166.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Clostridium
           carboxidivorans P7]
 gi|255511087|gb|EET87385.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Clostridium
           carboxidivorans P7]
          Length = 449

 Score =  446 bits (1148), Expect = e-123,   Method: Composition-based stats.
 Identities = 177/447 (39%), Positives = 260/447 (58%), Gaps = 13/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + FF++++GCQMN  DS ++  M    GYER     D+DLI+ NTC +RE A  KVY  L
Sbjct: 13  KLFFIETWGCQMNEEDSEKLSGMLKKIGYERTEVKQDSDLIIFNTCCVRENAELKVYGNL 72

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G           +  DL++ + GC+ Q EG  +EI++R P V+++ G    Y+ PE L R
Sbjct: 73  GA----LKKLKDKKPDLIIAICGCMMQQEGMAKEIVKRFPFVDIIFGTHNAYKFPEYLNR 128

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            +  +  +    + ED       +D    RK  V AF+TI  GC+ FCT+C+VP+ RG E
Sbjct: 129 VKQEQNSIIEIQNKEDGIVEGLPID----RKSDVKAFVTIMYGCNNFCTYCIVPFVRGRE 184

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR    + +E + LI  G  EITLLGQNVN+  GK L+  K +F++LL  ++EI+GL R
Sbjct: 185 RSRKPEDIENEIKDLISKGYKEITLLGQNVNS-YGKDLEP-KVSFANLLRRINEIEGLER 242

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +++ T HP+D +  ++ A  + + +   +HLPVQSGS RILK MNR +T  +Y  ++ RI
Sbjct: 243 IKFMTPHPKDFTQDVLDAIAECENVCEQVHLPVQSGSSRILKKMNRHYTKEQYLDLVRRI 302

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R   PD+AI++D IVGFPGET++DF  T+ L  ++ Y  AF+F YS R GTP   M EQ+
Sbjct: 303 RETIPDVAITTDIIVGFPGETEEDFEETLSLAREVQYDSAFTFIYSRRKGTPADEMEEQI 362

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVLN 441
            E+VK ER   L + +       N    G+I E+L+E   K +  KL GR+   + V   
Sbjct: 363 AEDVKHERFNRLVEIINASSAKNNKKYEGRIEEILVEDFSKNDDTKLTGRTRTGKLVNFP 422

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
               +IG ++KV+I      +L GE +
Sbjct: 423 GSKDSIGKLVKVKIVKANSFSLIGEEI 449


>gi|320353884|ref|YP_004195223.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Desulfobulbus propionicus
           DSM 2032]
 gi|320122386|gb|ADW17932.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Desulfobulbus propionicus
           DSM 2032]
          Length = 450

 Score =  446 bits (1147), Expect = e-123,   Method: Composition-based stats.
 Identities = 179/454 (39%), Positives = 272/454 (59%), Gaps = 15/454 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + +  ++K++GCQMN  DS  ME M   +GY    S + AD++++NTC IREKA +KV+S
Sbjct: 1   MSKNLYIKTFGCQMNERDSEIMEQMLAQEGYVPAASPEGADVVLINTCSIREKAEQKVFS 60

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            LG++R  K         LL+ V GCVAQ EGE I  R P V+++VG Q  Y+LPE+L R
Sbjct: 61  LLGQLREEKAR----NPSLLLGVTGCVAQQEGERIRERMPHVDLIVGTQQIYQLPEMLAR 116

Query: 143 ARFGKRVVDTDYSVE-----DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197
              G    +T   +E       F++L I             F+TI +GC+ +C++CVVP 
Sbjct: 117 LTQGMTTRETATDLEGSFAIPPFQKLLINTPPSPAPHSFRRFVTIMQGCNNYCSYCVVPG 176

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-RGKGLDGEKCTFSDLLYSLSE 256
           TRG EISR ++ +++E   L+  GV EITLLGQNVN++ +   +   +  F  LL  ++ 
Sbjct: 177 TRGREISRPVADIMEEVEILVSQGVKEITLLGQNVNSYGKTNKVADTEVDFPQLLRQVAL 236

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           + GL RLR+TTSHP+D+S+ L++   ++D+L P+ HLPVQSGS+ +L+ MNR++T   Y 
Sbjct: 237 VNGLRRLRFTTSHPKDLSEALMRCFAEIDILCPHFHLPVQSGSNAVLQRMNRKYTVENYL 296

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
           + +  +R + PDIA+++D IVGFPGET+ DF+ATMDL+  + +  +FSFKYS R  T  +
Sbjct: 297 EKVASLRRLCPDIALATDIIVGFPGETEADFQATMDLLQTVRFHGSFSFKYSDRPHTRSA 356

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQ 436
              +++ E VKA RL+  Q       +  N   +G+ +EV++E    E  +L GR+P  Q
Sbjct: 357 EFSDKIPEEVKARRLMEFQSLQDSISLERNSESIGREVEVMVE--SGEGNRLRGRTPANQ 414

Query: 437 SVVLNSKNHN---IGDIIKVRITDVKISTLYGEL 467
            V   +   +    G + +V+I      +L G L
Sbjct: 415 IVHFTAAPASSLIPGTLARVQIDHAGKHSLKGTL 448


>gi|314933472|ref|ZP_07840837.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus caprae
           C87]
 gi|313653622|gb|EFS17379.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus caprae
           C87]
          Length = 514

 Score =  446 bits (1147), Expect = e-123,   Method: Composition-based stats.
 Identities = 170/448 (37%), Positives = 264/448 (58%), Gaps = 15/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + F +K+YGCQMN +D+  M  +  + GY     ++ AD+I++NTC IRE A  KV+S +
Sbjct: 68  RTFLIKTYGCQMNAHDTEVMAGILKALGYSATTDINQADVILINTCAIRENAENKVFSEI 127

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G +++LK    KE  D L+ V GC++Q E    +IL+    V+++ G    + LPE+LE 
Sbjct: 128 GNLKHLK----KERPDCLIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHHLPEILEE 183

Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           A   K +V   +S E D  E L  V     R+  + A++ I  GCDKFCT+C+VP+TRG 
Sbjct: 184 AYLSKAMVVEVWSKEGDVIENLPKV-----REGSIKAWVNIMYGCDKFCTYCIVPFTRGK 238

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR    +++E R+L   G  EITLLGQNVN+  GK ++       DLL  +S+I  + 
Sbjct: 239 ERSRRPEDIINEVRELAREGYQEITLLGQNVNS-YGKDIEDLDYGLGDLLEDISKID-IP 296

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHP D +D +I+   +   ++P++HLPVQSG++ +LK M R++T   Y  +++R
Sbjct: 297 RVRFTTSHPWDFTDRMIEVIANGGNIVPHIHLPVQSGNNAVLKIMGRKYTRESYLDLVNR 356

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I++  P+IA+++D IVG+P ET++ F  T+ L D++ +  A+++ YS R GTP + M + 
Sbjct: 357 IKTAIPNIALTTDIIVGYPNETEEQFEETLSLYDEVEFEHAYTYLYSQRDGTPAAKMKDN 416

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440
           V   VK ERL  L KK+ E          G+I+ VL E   K+    L G +   + V  
Sbjct: 417 VPTEVKKERLQRLNKKVGEYSQKAMSQYEGEIVTVLCEGASKKDDTVLAGYTEKNKLVNF 476

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
            +    IG ++ V+I + K  +L G  V
Sbjct: 477 KAPKEMIGKLVDVKIDEAKQYSLNGTFV 504


>gi|282862292|ref|ZP_06271354.1| RNA modification enzyme, MiaB family [Streptomyces sp. ACTE]
 gi|282562631|gb|EFB68171.1| RNA modification enzyme, MiaB family [Streptomyces sp. ACTE]
          Length = 497

 Score =  446 bits (1147), Expect = e-123,   Method: Composition-based stats.
 Identities = 182/457 (39%), Positives = 264/457 (57%), Gaps = 22/457 (4%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDD--ADLIVLNTCHIREKAAEKV 80
           V + + V++YGCQMNV+DS R+  +    GY R     D  AD++V NTC +RE A  K+
Sbjct: 3   VQKSYEVRTYGCQMNVHDSERLSGLLEDAGYVRAPEGSDGDADVVVFNTCAVRENADNKL 62

Query: 81  YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140
           Y  LGR+  +K  R      + + V GC+AQ + + I+RR+P V+VV G     +LP LL
Sbjct: 63  YGNLGRLAPMKTKR----PGMQIAVGGCLAQKDRDTIVRRAPWVDVVFGTHNIGKLPVLL 118

Query: 141 ERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           ERAR  +   V+   S+E     L        R+    A+++I  GC+  CTFC+VP  R
Sbjct: 119 ERARVQEEAQVEIAESLEAFPSTLPT-----RRESAYAAWVSISVGCNNTCTFCIVPALR 173

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G E  R    ++ E   L+  GV EITLLGQNVNA  G  + G++  FS LL +   I+G
Sbjct: 174 GKEKDRRTGDILAEIEALVAEGVSEITLLGQNVNA-YGSDI-GDREAFSKLLRACGTIEG 231

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           L R+R+T+ HPRD +D +I A  +   +MP LH+P+QSGSDRILK+M R +    +  II
Sbjct: 232 LERVRFTSPHPRDFTDDVIAAMAETPNVMPQLHMPMQSGSDRILKAMRRSYRQERFLGII 291

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
           +++R+  PD AIS+D IVGFPGET++DF  TM  V +  +A AF+F+YS R GTP ++M 
Sbjct: 292 EKVRAAMPDAAISTDIIVGFPGETEEDFEQTMHAVREARFANAFTFQYSKRPGTPAADME 351

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKG---KLVGRSPWL 435
            Q+ + V  ER + L     E     N   VG+ ++V++ E  G++ G   +L GR+P  
Sbjct: 352 GQIPKEVVQERYMRLSALQEEISWEENKKQVGRTLDVMVAEGEGRKDGATHRLSGRAPDN 411

Query: 436 QSVVL--NSKNHNIGDIIKVRITDVKISTLY--GELV 468
           + V     +++   GD++ V IT      L   GE V
Sbjct: 412 RLVHFTKPAQDVRPGDVVTVDITYAAPHHLLAEGEPV 448


>gi|73662777|ref|YP_301558.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus
           saprophyticus subsp. saprophyticus ATCC 15305]
 gi|123775346|sp|Q49X85|MIAB_STAS1 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|72495292|dbj|BAE18613.1| putative 2-methylthioadenine synthetase [Staphylococcus
           saprophyticus subsp. saprophyticus ATCC 15305]
          Length = 513

 Score =  446 bits (1147), Expect = e-123,   Method: Composition-based stats.
 Identities = 171/448 (38%), Positives = 264/448 (58%), Gaps = 15/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + F +K+YGCQMN +D+  M  +  + GY     ++ AD+I++NTC IRE A  KV+S +
Sbjct: 67  KTFLIKTYGCQMNAHDTEVMAGILGALGYTPTEDINHADVILINTCAIRENAENKVFSEI 126

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G +++LK    KE  + ++ V GC++Q E    +IL+    V+++ G    +RLPE+LE 
Sbjct: 127 GNLKHLK----KEKPETVIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHRLPEILEE 182

Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           A   K +V   +S E D  E L  V     R+  + A++ I  GCDKFCT+C+VP+TRG 
Sbjct: 183 AYLSKAMVVEVWSKEGDVIENLPKV-----REGNIKAWVNIMYGCDKFCTYCIVPFTRGK 237

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR    ++DE R L   G  EITLLGQNVNA  GK +DG      DLL  +S+I  + 
Sbjct: 238 ERSRRPEDIIDEVRDLARQGYKEITLLGQNVNA-YGKDIDGLAYGLGDLLEDISKID-IP 295

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHP D +D +I+   +   ++P++HLPVQSG++ +LK M R++T   Y  +++R
Sbjct: 296 RVRFTTSHPWDFTDRMIEVIANGGNIVPHVHLPVQSGNNAVLKIMGRKYTRESYLDLVNR 355

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I++  P++A+++D IVG+P ETD+ F  T+ L D++ +  A+++ YS R GTP + M + 
Sbjct: 356 IKTHIPNVALTTDIIVGYPNETDEQFEETLTLYDEVEFEHAYTYIYSQRDGTPAAKMNDN 415

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440
           V  +VK +RL  L KK+            GQ ++VL E   K+    L G +   + V  
Sbjct: 416 VPLDVKKDRLQQLNKKVACYSERAMQQYEGQTVQVLCEGVSKKDDTVLSGYTSKNKLVNF 475

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
            +    IG I+ V I + K  +L G  +
Sbjct: 476 KAPKSMIGKIVNVYIDEAKQFSLNGTFI 503


>gi|310658531|ref|YP_003936252.1| isopentenyl-adenosine a37 tRNA methylthiolase [Clostridium
           sticklandii DSM 519]
 gi|308825309|emb|CBH21347.1| isopentenyl-adenosine A37 tRNA methylthiolase [Clostridium
           sticklandii]
          Length = 477

 Score =  446 bits (1147), Expect = e-123,   Method: Composition-based stats.
 Identities = 179/464 (38%), Positives = 277/464 (59%), Gaps = 16/464 (3%)

Query: 7   LIGVAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIV 66
           +  ++ M      +    Q +F++++GCQMN +DS  +  MF     +  +SM++AD+I+
Sbjct: 21  INSLSQMNEDFFKENGRYQSYFIQTFGCQMNEHDSENLAGMFDMMNIDLADSMEEADIII 80

Query: 67  LNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIV 124
            NTC +RE A  KVY  L  ++ LK        DL++ V GC+ Q +   +EI +R P V
Sbjct: 81  FNTCAVRENAELKVYGNLHALKKLKVK----NPDLIIAVCGCMMQQDHVVDEIKKRFPHV 136

Query: 125 NVVVGPQTYYRLPELLERARFG--KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTI 182
           ++V G    Y+ PELL +   G  K ++D      +  E L        R+  + AF+ I
Sbjct: 137 SLVFGTHNLYKFPELLLKYLSGDSKTLIDVWDIDGNVIEGLPSA-----RRYDLKAFVNI 191

Query: 183 QEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG 242
             GC+ FCT+C+VPYTRG E SR+   V++E + L  NGV EITLLGQNVN+  G   D 
Sbjct: 192 MYGCNNFCTYCIVPYTRGRERSRNPEDVINEVKDLARNGVKEITLLGQNVNS-YGNDFD- 249

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
            K +F+ LL  L++I+G+ R+R+ TSHP+D+S+ LI A  +LD +   +HLPVQSGS  +
Sbjct: 250 NKVSFAKLLTMLNDIQGIERIRFMTSHPKDISEELIDAVANLDKVCESIHLPVQSGSTAV 309

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           LK MNR +T  +Y ++I++I++  P++A+++D +VGFPGET++DF  T+D+++K+ Y  A
Sbjct: 310 LKKMNRHYTKDQYIELINKIKTKVPNVALTTDIMVGFPGETEEDFLDTLDVLEKVQYDSA 369

Query: 363 FSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422
           F F YS R GT   NM   +DE+VK +R   L  K  E     N   + +I+EVL+E   
Sbjct: 370 FMFIYSVRKGTVAENMDNHIDESVKKDRFNRLLSKANEIAELKNSKYMDEIVEVLVEGFS 429

Query: 423 -KEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYG 465
            K+K +L+GR+   + V        IG ++ V++T+ K  +L G
Sbjct: 430 KKDKTRLMGRTRQNKLVNFIGDESMIGSLVNVKVTETKSFSLNG 473


>gi|118618695|ref|YP_907027.1| hypothetical protein MUL_3378 [Mycobacterium ulcerans Agy99]
 gi|229890570|sp|A0PT87|MIAB_MYCUA RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|118570805|gb|ABL05556.1| conserved hypothetical protein [Mycobacterium ulcerans Agy99]
          Length = 532

 Score =  446 bits (1147), Expect = e-123,   Method: Composition-based stats.
 Identities = 168/458 (36%), Positives = 263/458 (57%), Gaps = 20/458 (4%)

Query: 20  QCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEK 79
           + +  + + V++YGCQMNV+DS RM  +  + GY R     DAD++V NTC +RE A  K
Sbjct: 19  EPMSARTYQVRTYGCQMNVHDSERMAGLLEAAGYRRAAEGTDADVVVFNTCAVRENADNK 78

Query: 80  VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL 139
           +Y  L  +   K    +   D+ + V GC+AQ + + +LR++P V+VV G      LP L
Sbjct: 79  LYGNLSHLAPRK----RTSPDMQIAVGGCLAQKDRDALLRKAPWVDVVFGTHNIGSLPAL 134

Query: 140 LERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
           L+RAR  +   V+   +++     L        R+    A+++I  GC+  CTFC+VP  
Sbjct: 135 LDRARHNRVAQVEIAEALQQFPSSLPSA-----RESAYAAWVSISVGCNNTCTFCIVPSL 189

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG----EKCTFSDLLYSL 254
           RG EI RS + ++ E + L+D GV EITLLGQNVNA+     D      +  F++LL + 
Sbjct: 190 RGKEIDRSPADILAEVQSLVDTGVVEITLLGQNVNAYGVSFADPALPRNRGAFAELLRAC 249

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
            +I GL R+R+T+ HP + +D +I+A      + P LH+P+QSGSDR+L++M R + A  
Sbjct: 250 GDIDGLERVRFTSPHPAEFTDDVIEAMAQTPNVCPALHMPLQSGSDRVLRAMRRSYRAER 309

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
           Y  II+R+R+  P  AI++D IVGFPGET+ DF AT+D+V +  ++ AF+F+YS R GTP
Sbjct: 310 YLGIIERVRAAMPHAAITTDLIVGFPGETEQDFAATLDVVRQARFSAAFTFQYSKRPGTP 369

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEK---GKLVG 430
            + +  Q+ + V  ER   L +   +  +  N A VGQ +E+L+    G++     ++ G
Sbjct: 370 AAELDGQLPKAVVQERYERLVELQEQISLEGNRAIVGQRVELLVATGEGRKDTLTARMSG 429

Query: 431 RSPWLQSVVLNSKN--HNIGDIIKVRITDVKISTLYGE 466
           R+   + V   + +     GDI+ V +TD     L  +
Sbjct: 430 RARDGRLVHFRAGDGPVRPGDIVTVEVTDAAPHHLIAD 467


>gi|300780998|ref|ZP_07090852.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Corynebacterium
           genitalium ATCC 33030]
 gi|300532705|gb|EFK53766.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Corynebacterium
           genitalium ATCC 33030]
          Length = 520

 Score =  446 bits (1147), Expect = e-123,   Method: Composition-based stats.
 Identities = 159/468 (33%), Positives = 255/468 (54%), Gaps = 23/468 (4%)

Query: 13  MVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHI 72
             S        P+ + V+++GCQMNV+DS R+  +    GY      DDADLIV NTC +
Sbjct: 4   ATSTANGTSQHPRTYEVRTFGCQMNVHDSERLSGLLEDAGYVAATD-DDADLIVFNTCAV 62

Query: 73  REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT 132
           RE A +++Y  LG +R+ K    +    + + V GC+AQ + + ++ ++P V+ V G   
Sbjct: 63  RENADKRLYGTLGALRDKK----RHHPGMQIAVGGCLAQKDRDTVVEKAPWVDAVFGTHN 118

Query: 133 YYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTF 192
              LP LL+RAR  +          + F  +        R+     ++++  GC+  CTF
Sbjct: 119 MSALPALLDRARVEEEAQVEVVESLEVFPSVLPA----KRESSYAGWVSVSVGCNNTCTF 174

Query: 193 CVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE----KCTFS 248
           C+VP  RG E  R    ++ E + L+D GV E+TLLGQNVNA+    +D +    +  FS
Sbjct: 175 CIVPSLRGKEQDRRPGDILAEVQALVDQGVSEVTLLGQNVNAYGVNFVDPDMPRDRSAFS 234

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
            L  +  EI+GL RLR+T+ HP + +  +I A  +   + P LH+P+QSGSD++LK M R
Sbjct: 235 KLPRACGEIEGLERLRFTSPHPAEFTSDVIDAMAETPNICPQLHMPLQSGSDKVLKDMRR 294

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
            + + ++  I+D +R+  P  +I++D IVGFPGET++DF+AT+++V+K  +  A++F+YS
Sbjct: 295 SYRSKKFLGILDEVRAKLPHASITTDIIVGFPGETEEDFQATLNVVEKARFTSAYTFQYS 354

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-- 426
           PR GTP + M  QV + V  ER   L           N   +G   E+L+++  ++K   
Sbjct: 355 PRPGTPAAEMDGQVPKEVVQERFERLLALQERISYEENLKLIGTSQELLVQETNEKKADR 414

Query: 427 ----KLVGRSPWLQSVVLNS----KNHNIGDIIKVRITDVKISTLYGE 466
               +L GR+   + V  ++         GDI+ V ITD +   L  +
Sbjct: 415 AQSTRLSGRARDGRLVHFDAGSLIDAVRPGDIVHVTITDARPFYLIAD 462


>gi|219668765|ref|YP_002459200.1| (dimethylallyl)adenosine tRNA methylthiotransferase
           [Desulfitobacterium hafniense DCB-2]
 gi|219539025|gb|ACL20764.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Desulfitobacterium
           hafniense DCB-2]
          Length = 447

 Score =  446 bits (1147), Expect = e-123,   Method: Composition-based stats.
 Identities = 162/452 (35%), Positives = 260/452 (57%), Gaps = 14/452 (3%)

Query: 18  VDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA 77
           +    VP++    +YGCQM+  D+  + ++   +GY R   ++ ADLI++NTC +RE A 
Sbjct: 1   MSITKVPKKVVTLAYGCQMSERDADTLTEISSQKGYVRSQELEQADLIIVNTCCVRESAE 60

Query: 78  EKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYR 135
            K+   +G +++LK +       L + ++GC+ Q  G  E + +R+P V++  G    + 
Sbjct: 61  NKILGKIGELKHLKEA----NPQLKIAISGCMVQQPGALERLRKRAPHVDIWAGTHNIHE 116

Query: 136 LPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
              LLE A    +V +      +  E + +   G      + A++ I  GC+ FCT+C+V
Sbjct: 117 FQRLLEEAEEKGKVAEVWEKPRETQESVLLAAKGK-----LKAYVNISYGCNNFCTYCIV 171

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
           P+ RG E SR   +++ E R L++ G  E+TLLGQNVN+  G+ LD     F+DLL  + 
Sbjct: 172 PHVRGRERSRQPEEILAEIRALVETGCREVTLLGQNVNS-YGQDLD-RAYDFADLLKDVD 229

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
            I GL R+R+ TSHP+D+SD LI+       L  ++HLP Q+GSD ILK MNR++T   Y
Sbjct: 230 SIDGLWRVRFMTSHPKDLSDKLIETIAAGTHLCEHIHLPFQAGSDEILKGMNRKYTREYY 289

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
              I +I+++ P +++++D IVGFPGET++DF  T+ L+ ++ Y+QAF+F YS R GTP 
Sbjct: 290 LSRIAQIKAIIPQVSLTTDIIVGFPGETEEDFEQTLALIRQVKYSQAFTFMYSKRSGTPA 349

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPW 434
           + M EQ+  ++K  RL  L      Q +++    +G+  EVL+E   K    +L GR+  
Sbjct: 350 AQMAEQIPLDIKKRRLQQLITVQNAQSLAWRQEMIGKTCEVLVEGPSKSNPDRLTGRTRG 409

Query: 435 LQSVVLNSKNHNIGDIIKVRITDVKISTLYGE 466
            + VV   +   IG +++V I D    TL+GE
Sbjct: 410 YELVVFPGEAQLIGTLVQVLIQDANSWTLFGE 441


>gi|213963289|ref|ZP_03391546.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Capnocytophaga sputigena
           Capno]
 gi|213954151|gb|EEB65476.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Capnocytophaga sputigena
           Capno]
          Length = 482

 Score =  446 bits (1147), Expect = e-123,   Method: Composition-based stats.
 Identities = 166/459 (36%), Positives = 254/459 (55%), Gaps = 22/459 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ +++SYGCQMN  DS  +  +    GY   +++DDADL+++NTC +REKA + +   L
Sbjct: 24  KKLYIESYGCQMNFSDSEIVASILSKVGYNTTDTVDDADLVLINTCSVREKAEQTIRKRL 83

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            +    K         + V V GC+A+      L    IV++VVGP  Y  LP LLE   
Sbjct: 84  EQFNVYKRK----KPTMKVGVLGCMAERVKHAFLEEEKIVDMVVGPDAYKDLPNLLEEVD 139

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G+  V+   S ++ +  ++ +        GVTAF++I  GCD  CTFC+VP+TRG E S
Sbjct: 140 EGREAVNVILSKDETYADIAPIRLN---SNGVTAFVSITRGCDNMCTFCIVPFTRGRERS 196

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK-------------CTFSDLL 251
           R    +++E   L   G  E+TLLGQNV+++   G   +K               F+ LL
Sbjct: 197 RDPYSILNEIADLQARGFKEVTLLGQNVDSYLWYGGGLKKDFSKASEMQQATAINFAKLL 256

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
             ++  +  +R+R++TS+P+DM+  +I        +  Y+HLPVQSGS+RILK+MNR HT
Sbjct: 257 DMVATAQPEMRIRFSTSNPQDMTLDVIDTMAKHPNICKYIHLPVQSGSNRILKAMNRLHT 316

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
             EY  +ID IR   P+ AIS D I GFP ET++D R T+ L++ + Y   F F YS R 
Sbjct: 317 REEYFTLIDSIRERIPECAISQDMIAGFPTETEEDHRDTLSLMEYVKYDFGFMFAYSERP 376

Query: 372 GTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLV 429
           GT  +  + + V E VK  RL  +    ++  +    A VG+++EVLIE   K+   + +
Sbjct: 377 GTLAARKIEDDVPEEVKKRRLAEIIDLQQKHSLYRTQAQVGKVVEVLIEGTSKKSADEWM 436

Query: 430 GRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           GR+     VV   +N+ +GD + V IT+   +TL G+ +
Sbjct: 437 GRNTQNTVVVFPKENYKVGDFVLVEITNCTSTTLIGKAI 475


>gi|126663275|ref|ZP_01734273.1| 2-methylthioadenine synthetase [Flavobacteria bacterium BAL38]
 gi|126624933|gb|EAZ95623.1| 2-methylthioadenine synthetase [Flavobacteria bacterium BAL38]
          Length = 482

 Score =  446 bits (1147), Expect = e-123,   Method: Composition-based stats.
 Identities = 176/459 (38%), Positives = 258/459 (56%), Gaps = 22/459 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F++SYGCQMN  DS  +  + +  GY    +++DADL+++NTC IR+KA + +   L
Sbjct: 24  KKLFIESYGCQMNFSDSEIVASILYENGYNTTQNLEDADLVLVNTCSIRDKAEQTIRKRL 83

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            +   +K    K    + V V GC+A+    + L    IV++VVGP  Y  LP LL    
Sbjct: 84  EKYNAVK----KINPTMKVGVLGCMAERLKSQFLEEEKIVDMVVGPDAYKDLPNLLAEVE 139

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G+  ++   S E+ +  +S V        GV AF++I  GCD  CTFCVVP+TRG E S
Sbjct: 140 EGRDAINVILSKEETYGDISPVRLN---SNGVNAFVSITRGCDNMCTFCVVPFTRGRERS 196

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNA--WRGKGL--DGEKCT---------FSDLL 251
           R    ++DE + L D G  E+TLLGQNV++  W G GL  D +K T         F+ LL
Sbjct: 197 REPQSIIDEIQDLYDRGFKEVTLLGQNVDSYLWYGGGLKKDYDKATEIQKATAMDFAQLL 256

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
              + +   +R R++TS+P+DM + ++        +  Y+HLPVQSGS RILK MNR+HT
Sbjct: 257 DKCATLFPKMRFRFSTSNPQDMHEEVLHVIAKHHNICNYIHLPVQSGSTRILKEMNRQHT 316

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
             EY  +ID+I S+ PDI++S D I GFP ET++D + T+ L++ + Y   F F YS R 
Sbjct: 317 REEYMALIDKIYSIIPDISLSQDMIAGFPTETEEDHQDTLSLMEYVKYDFGFMFAYSERP 376

Query: 372 GTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLV 429
           GT  +  M + V E VK  RL  +    ++  +      +GQ +EVLIEK  K       
Sbjct: 377 GTLAARKMEDDVPEEVKKRRLTEIVDLQQKHGLERTQRFIGQEVEVLIEKESKRSDAHWS 436

Query: 430 GRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           GR+     VV   +N+ +G+ + V+ITD   +TL GE V
Sbjct: 437 GRNSQNTVVVFPKENYKVGEFVMVKITDCTAATLIGEAV 475


>gi|75909246|ref|YP_323542.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Anabaena
           variabilis ATCC 29413]
 gi|123758760|sp|Q3M8N9|MIAB_ANAVT RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|75702971|gb|ABA22647.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Anabaena variabilis ATCC
           29413]
          Length = 454

 Score =  446 bits (1147), Expect = e-123,   Method: Composition-based stats.
 Identities = 182/454 (40%), Positives = 274/454 (60%), Gaps = 23/454 (5%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +R+ + ++GCQMN  DS RM  +    G+E     ++AD+I+ NTC IR+ A +KVYS+L
Sbjct: 6   RRYHITTFGCQMNKADSERMAGILEDMGFEFSEDPNNADVILYNTCTIRDNAEQKVYSYL 65

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR    K+ +     DL +VVAGCVAQ EGE +LRR P +++V+GPQ   RL +LLE   
Sbjct: 66  GRQAKRKHEQ----PDLTLVVAGCVAQQEGEALLRRVPELDLVMGPQHANRLKDLLESVF 121

Query: 145 FGKRVVDTD--YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            G +VV T+  + +ED  +          R   VTA++ +  GC++ CT+CVVP  RG+E
Sbjct: 122 AGNQVVATEAVHIMEDITQ--------ARRDSTVTAWVNVIYGCNERCTYCVVPNVRGVE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC------TFSDLLYSLSE 256
            SR+   V  E  +L   G  EITLLGQN++A  G+ L G         TF+DLLY + +
Sbjct: 174 QSRTPEAVRAEMEELGRQGYKEITLLGQNIDA-YGRDLPGATPEGRHLHTFTDLLYYVHD 232

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           + G+ R+R+ TSHPR  ++ LIKA  +L  +  + H+P QSG +++LK+M R +T  +YR
Sbjct: 233 VPGIERIRFATSHPRYFTERLIKACAELPKVCEHFHIPFQSGDNQLLKAMARGYTQEKYR 292

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
           +IID IR   PD +IS+D IVGFPGET++ F  T+ LVD IG+ Q  +  YSPR GTP +
Sbjct: 293 RIIDTIRRYMPDASISADAIVGFPGETEEQFENTLKLVDDIGFDQLNTAAYSPRPGTPAA 352

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWL 435
               Q+ E  K++RL  L   +  +    +   +G+I EVL+E+   K++ +++GR+   
Sbjct: 353 LWENQLSEETKSDRLQRLNHLVNVKAAERSQRYMGRIEEVLVEEQNPKDQTQVMGRTRGN 412

Query: 436 QSVVLNSK-NHNIGDIIKVRITDVKISTLYGELV 468
           +        N   G ++KV+I +V+  +L GE +
Sbjct: 413 RLTFFKGDINELKGQLVKVKINEVRAFSLTGEPI 446


>gi|294791811|ref|ZP_06756959.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Veillonella sp. 6_1_27]
 gi|294793672|ref|ZP_06758809.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Veillonella sp. 3_1_44]
 gi|294455242|gb|EFG23614.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Veillonella sp. 3_1_44]
 gi|294457041|gb|EFG25403.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Veillonella sp. 6_1_27]
          Length = 437

 Score =  445 bits (1146), Expect = e-123,   Method: Composition-based stats.
 Identities = 157/446 (35%), Positives = 249/446 (55%), Gaps = 13/446 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + +++ +YGCQMN  DS R+     S GY    +++ ADLI+LNTC +RE A  KVY  +
Sbjct: 2   KSYYIYTYGCQMNTADSERLSHQLESVGYIPTENVETADLILLNTCAVRENAETKVYGRI 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           G ++ LK    +   +L++ V GC+AQ    E+ +R+P +++V+G      + E++E  +
Sbjct: 62  GELKRLK----RNNKNLIIAVTGCMAQKNQAEMFKRAPHIDIVLGTHNIQHINEMIEEVQ 117

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G       + +    +   + +          A++ I  GC+KFCT+C+VP+ RG EIS
Sbjct: 118 HGHT-----HQISVDMDNSVLPELEAKPNGSFYAWVPIMNGCNKFCTYCIVPHVRGREIS 172

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R +  +V E   L   G  EITLLGQNVN++     DG    F  L+ +L  I G+ R+R
Sbjct: 173 RPVEAIVKEVTDLGVKGFKEITLLGQNVNSYGLDFKDG--TDFGTLIDALDGIPGIERIR 230

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           Y TSHP+DMS  +I A G    ++ +LHLP+QSGS+RILK MNR +T   Y++++   R 
Sbjct: 231 YMTSHPQDMSKSMIDALGRSSNIVTHLHLPIQSGSNRILKKMNRHYTVEHYKELLSYCRE 290

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
              D+ +++D IVGFPGET++DF+AT+ L+  + Y  A++F YS R GTP + M +Q+ E
Sbjct: 291 KIKDVVVTTDIIVGFPGETEEDFQATLQLLKDVRYDMAYTFIYSKRSGTPAATMDDQIPE 350

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLNSK 443
            +K  RL  L     E     N    GQ+ ++++E    +++    GR+   + V+    
Sbjct: 351 EIKRVRLQTLMDVQNEISYELNKPMEGQVFDIIVEGPSPRDEDMWFGRTSGNKMVLFPKD 410

Query: 444 NHN-IGDIIKVRITDVKISTLYGELV 468
           +   IG  +   I   +    YG +V
Sbjct: 411 DSLSIGQTVPAHIDKAQTWVCYGSIV 436


>gi|326334454|ref|ZP_08200666.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Capnocytophaga sp. oral
           taxon 338 str. F0234]
 gi|325693421|gb|EGD35348.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Capnocytophaga sp. oral
           taxon 338 str. F0234]
          Length = 481

 Score =  445 bits (1146), Expect = e-123,   Method: Composition-based stats.
 Identities = 172/459 (37%), Positives = 259/459 (56%), Gaps = 22/459 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ +++SYGCQMN  DS  +  +   +G+   + + +ADLI++NTC +REKA + +   L
Sbjct: 24  RKLYIESYGCQMNFSDSEIVASILHKEGFNTTDKLHEADLILINTCSVREKAEQTIRKRL 83

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            +   +K    +    + V V GC+A+    + L    IV++VVGP  Y  LP LL    
Sbjct: 84  EQFNTVK----RHKPAMRVGVLGCMAERLKHKFLEEEHIVDLVVGPDAYKDLPNLLTEVD 139

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G+  V+   S ++ +  +S +        GVTAF++I  GCD  CTFC+VP+TRG E S
Sbjct: 140 NGRDAVNVQLSKDETYADISPIRLN---SNGVTAFVSITRGCDNMCTFCIVPFTRGRERS 196

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNA--WRGKGL--DGEKCT---------FSDLL 251
           R    +++E  +L   G  EITLLGQNV++  W G GL  D EK +         F+ LL
Sbjct: 197 RDPHSIINEIAELQQRGYKEITLLGQNVDSYLWYGGGLKKDFEKASDIQKVTAVNFAKLL 256

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
             ++     +R+R++TS+P+DM+  +I        +  Y+HLPVQSGS+RILK+MNR HT
Sbjct: 257 DIVASEFPKMRIRFSTSNPQDMTLDVIDTMAKHHNICKYIHLPVQSGSNRILKAMNRLHT 316

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
             EY  +ID IR   PD AIS D I GFP ET++D + T+ L++ + Y   F F YS R 
Sbjct: 317 REEYFALIDGIRERIPDCAISQDMITGFPTETEEDHQDTLSLMEYVKYDFGFMFAYSERP 376

Query: 372 GTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LV 429
           GT  +  +L+ V E VK  RL  +    ++       A VG+ +EVLIE + K+  +  +
Sbjct: 377 GTLAARKILDDVPEEVKKRRLAEIIDLQQKHSHYRTQAQVGKTVEVLIEGNSKKSDQEWM 436

Query: 430 GRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           GR+     VV   + + +GD + V+IT+   +TL GE V
Sbjct: 437 GRNTQNTVVVFPKEQYKVGDFVNVKITNCTSTTLIGEAV 475


>gi|297568782|ref|YP_003690126.1| RNA modification enzyme, MiaB family [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296924697|gb|ADH85507.1| RNA modification enzyme, MiaB family [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 452

 Score =  445 bits (1146), Expect = e-123,   Method: Composition-based stats.
 Identities = 185/450 (41%), Positives = 271/450 (60%), Gaps = 13/450 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +  +++++GCQMN  DS  M  +     Y   +  ++AD IV+NTC IR KAA+K YS L
Sbjct: 5   RNLYIETFGCQMNERDSEIMTQLMSQAAYLETSRPEEADCIVVNTCSIRGKAAQKAYSLL 64

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           G  R LK    K   +L++ VAGCVAQ +GE +L++ P +++V+GPQ  YRLPEL+E AR
Sbjct: 65  GGYRRLK----KRRPELVIAVAGCVAQQDGENLLKKMPHLDLVIGPQNIYRLPELVESAR 120

Query: 145 -FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
               R   T+ S +  F     +            F+TI +GC+ FCT+CVVP+TRG E+
Sbjct: 121 RQATRTTATELSKD--FVIPPFLPQVNGTATNHKRFVTIMQGCNNFCTYCVVPHTRGREV 178

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK----GLDGEKCTFSDLLYSLSEIKG 259
           SR    +++E R L D+GV E+TLLGQNVN++       G  G+   F  LL ++  ++G
Sbjct: 179 SRKPEDIINEVRHLADHGVREVTLLGQNVNSYGQDRGPAGTTGQIDDFPALLQAVVAVEG 238

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           + R+R+TTSHP+D+S  LI     L+ L P+ HLPVQSGSDRIL  MNR+++  +Y   +
Sbjct: 239 IYRVRFTTSHPKDLSPELIDCFAQLNKLCPHFHLPVQSGSDRILARMNRKYSRADYLARV 298

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            ++R VRPDIAI++D IVGFPGET+ DF ATM+LV+ + Y  AFSFKYS R     +   
Sbjct: 299 AQLRRVRPDIAITTDLIVGFPGETEADFEATMELVNFVRYDSAFSFKYSDRPNAAAAAFD 358

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRSPWLQSV 438
           ++V E VK+ RL  LQ++  E       + VG  +EV++E   K   G+  GR+P  + V
Sbjct: 359 DKVPEEVKSRRLSLLQQRQEEISREIGRSMVGSTVEVMVEGRSKNSDGQWSGRTPTNRIV 418

Query: 439 VLNSKNHN-IGDIIKVRITDVKISTLYGEL 467
                +    G+++ V + +    +L G +
Sbjct: 419 NFTGPDSLRPGELVDVYLEEACRHSLRGRM 448


>gi|163752490|ref|ZP_02159679.1| tRNA-i(6)A37 modification enzyme MiaB [Shewanella benthica KT99]
 gi|161327634|gb|EDP98829.1| tRNA-i(6)A37 modification enzyme MiaB [Shewanella benthica KT99]
          Length = 461

 Score =  445 bits (1146), Expect = e-123,   Method: Composition-based stats.
 Identities = 188/436 (43%), Positives = 275/436 (63%), Gaps = 12/436 (2%)

Query: 36  MNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSR 94
           MN YDS +M D+    +GY   +   +AD+++LNTC IREKA EKV+  LGR + LK+  
Sbjct: 1   MNEYDSSKMADLMDEYKGYTLTDDAAEADVLLLNTCSIREKAQEKVFHQLGRWKKLKDK- 59

Query: 95  IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG-KRVVDTD 153
                +L++ V GCVA  EG+ I  R+  V+++ GPQT +RLPE++++ + G K V+D  
Sbjct: 60  ---NPNLIIGVGGCVASQEGKMIKERAQCVDIIFGPQTLHRLPEMIDQVKQGGKAVIDIS 116

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           +   +KF+RL        R  G TAF++I EGC K+C+FCVVPYTRG E+SR +  V+ E
Sbjct: 117 FPEIEKFDRLP-----EPRADGPTAFVSIMEGCSKYCSFCVVPYTRGEEVSRPVDDVILE 171

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
             +L + GV E+ LLGQNVNA+RG   D + CTF++LL  ++ I G+ R+R+TTSHP + 
Sbjct: 172 VAQLAEQGVREVNLLGQNVNAFRGATHDDDICTFAELLRYIAAIDGIDRVRFTTSHPIEF 231

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
           S  +I  + D   L+ ++HLPVQSGSD IL  M R H A EY+ II R+R  RPDI ISS
Sbjct: 232 SQDIIDVYEDTPELVSFVHLPVQSGSDHILTQMKRGHMAIEYKSIIRRLRKARPDIQISS 291

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLC 393
           DFI+GFPGE+  DF  TM L++ + +  +FSF YS R GTP +++ + V    K ERL  
Sbjct: 292 DFIIGFPGESKQDFADTMKLIEDVAFDHSFSFIYSARPGTPAADLPDDVTLAEKKERLAI 351

Query: 394 LQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLNSKNHNIGDIIK 452
           LQ+++ +Q + ++   +G +  +L+E    K   +L GR+   + V  ++   +IG  + 
Sbjct: 352 LQERITQQAMRYSRQMLGTVQRILVEGPSVKNPMELRGRTETSRVVNFSADPKHIGSFVD 411

Query: 453 VRITDVKISTLYGELV 468
           V I DV  ++L G  V
Sbjct: 412 VEIVDVYANSLRGTFV 427


>gi|88811726|ref|ZP_01126980.1| tRNA-i(6)A37 modification enzyme MiaB [Nitrococcus mobilis Nb-231]
 gi|88791117|gb|EAR22230.1| tRNA-i(6)A37 modification enzyme MiaB [Nitrococcus mobilis Nb-231]
          Length = 443

 Score =  445 bits (1146), Expect = e-123,   Method: Composition-based stats.
 Identities = 187/436 (42%), Positives = 271/436 (62%), Gaps = 12/436 (2%)

Query: 36  MNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSR 94
           MN YDS +M D+    +G+ERV S  DADLI+LNTC IR KA EKV+S LGR R LK   
Sbjct: 1   MNEYDSTKMVDVLGAERGFERVYSPLDADLILLNTCSIRAKAQEKVFSELGRWRPLKER- 59

Query: 95  IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK-RVVDTD 153
                 L++ V GCVA  EG  I+ R+P V++V GPQT +RLPE+ +R    +  VVDT 
Sbjct: 60  ---NPGLVIGVGGCVASQEGATIIDRAPFVDLVFGPQTLHRLPEMYDRVLSTRAPVVDTS 116

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           +   +KF+RL        R  G TAF+++ EGC K+CTFCVVPYTRG E+SR    V+ E
Sbjct: 117 FPEIEKFDRLP-----EPRAVGPTAFVSVMEGCSKYCTFCVVPYTRGEEVSRPFEDVLAE 171

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
             +L + GV E+TLLGQNVN + G   DG     + L++ ++ + G+ R+R+TTSHP + 
Sbjct: 172 VAQLAEQGVREVTLLGQNVNGYLGTMDDGTVADLALLIHFIAAVDGIDRIRFTTSHPLNF 231

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
           +  LI+A+ ++  L+ +LHLPVQSGSD++L+ M R HT   Y  II+R+++ RPD+ +SS
Sbjct: 232 NATLIEAYAEVPQLVSHLHLPVQSGSDKVLRLMKRNHTRDYYLDIIERLKAARPDLVVSS 291

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLC 393
           DFIVGFPGE + DF  T+ LV+++G+ Q+FSF YS R GTP + + + +    K +RL  
Sbjct: 292 DFIVGFPGELERDFEDTLALVEQVGFDQSFSFIYSRRPGTPAAQLPDAIPLEAKKQRLYR 351

Query: 394 LQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRSPWLQSVVLNSKNHNIGDIIK 452
           LQ+ L       + + VG    +L++   K+   ++ GR+   + V        IG  ++
Sbjct: 352 LQEILNRNAQHVSQSMVGTTQTILVDGLSKKVASEVTGRTENNRVVNFPGPRRLIGRFVR 411

Query: 453 VRITDVKISTLYGELV 468
           + IT     +L G+L+
Sbjct: 412 IEITQALAHSLRGKLI 427


>gi|284115804|ref|ZP_06386693.1| tRNA-i(6)A37 modification enzyme MiaB [Candidatus Poribacteria sp.
           WGA-A3]
 gi|283829554|gb|EFC33903.1| tRNA-i(6)A37 modification enzyme MiaB [Candidatus Poribacteria sp.
           WGA-A3]
          Length = 436

 Score =  445 bits (1146), Expect = e-123,   Method: Composition-based stats.
 Identities = 180/446 (40%), Positives = 280/446 (62%), Gaps = 22/446 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
             ++++YGCQMN YDS R+++     G        +AD++++NTC IREKA +K  S LG
Sbjct: 5   TLYLETYGCQMNEYDSDRIQNAL---GASITEDPKEADIVIVNTCAIREKADQKALSSLG 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R ++LK        +L+V V+GCVAQ  GE+++RR P ++ V+GP+   +LP+L+E  + 
Sbjct: 62  RFKHLKAK----NPELIVGVSGCVAQLYGEDLIRRIPHLDFVLGPRAIPQLPQLIEEIKE 117

Query: 146 GK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            K R V+T + +++ F+ L     G        AF++IQ+GC+K C +C+VP  RG E++
Sbjct: 118 KKSRPVETSFDIQEPFDVLPYHQEGKP-----AAFVSIQQGCNKKCAYCIVPTVRGSEVN 172

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R +  ++ EAR LI  GV EITL+GQ VN+W+  GL      F DLL  L E+ GL R+R
Sbjct: 173 RPIEDIIAEARYLIAKGVKEITLIGQTVNSWKLGGLK-----FGDLLRVLGELDGLERIR 227

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +TTS+PRD++  +++A  D+  +  ++HLPVQSGSD++L+ MNR ++   Y   ++R+R 
Sbjct: 228 FTTSYPRDITKKMVEAMADVPKVCRHIHLPVQSGSDKVLRLMNRTYSRSWYIDSVNRLRD 287

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML---EQ 381
             P+IA+SSD IVGFPGET+DDF  TM LV+++G+  +FSFKYSPR GT G  +    E+
Sbjct: 288 AMPNIAVSSDIIVGFPGETEDDFEQTMSLVEEVGFDSSFSFKYSPRPGTVGEELWRSGER 347

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVL 440
           V+++   +RL  LQ+  R   +  N   +G+  +VL+E    K+   L GR+   + V  
Sbjct: 348 VEDSTAGQRLARLQEYQRAITLEKNAQRIGKSEQVLVEDASRKDSSWLSGRTEHNRIVNF 407

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGE 466
             +   IG ++ VRIT+   ++L G+
Sbjct: 408 PGEKELIGKMVDVRITEGLANSLRGQ 433


>gi|70726621|ref|YP_253535.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus
           haemolyticus JCSC1435]
 gi|123734986|sp|Q4L5Z6|MIAB_STAHJ RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|68447345|dbj|BAE04929.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 514

 Score =  445 bits (1146), Expect = e-123,   Method: Composition-based stats.
 Identities = 164/445 (36%), Positives = 259/445 (58%), Gaps = 15/445 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + F +K+YGCQMN +D+  M  +  + GY     +++AD+I++NTC IRE A  KV+S +
Sbjct: 68  RTFLIKTYGCQMNAHDTEVMAGILQALGYTATEDINEADVILINTCAIRENAENKVFSEI 127

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G +++LK    K   + L+ V GC++Q E    +IL+    V+++ G    ++LPE+LE 
Sbjct: 128 GNLKHLK----KNRPEALIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHKLPEILEE 183

Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           A   K +V   +S E D  E L  V     R+    A++ I  GCDKFCT+C+VP+TRG 
Sbjct: 184 AYLSKAMVVEVWSKEGDIIENLPKV-----REGSTKAWVNIMYGCDKFCTYCIVPFTRGK 238

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR    +++E R L  +G  EITLLGQNVN+  GK +   +    DLL  +S+I  + 
Sbjct: 239 ERSRRPEDIIEEVRGLARDGYKEITLLGQNVNS-YGKDIKDLEYGLGDLLEDISKID-IP 296

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHP D +D +I+       ++P++HLPVQSG++ +LK M R++T   Y  +++R
Sbjct: 297 RVRFTTSHPWDFTDRMIEVIAKGGNIVPHIHLPVQSGNNAVLKIMGRKYTRESYLDLVNR 356

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I+   P++A+++D IVG+P ET++ F  T+ L D++ +  A+++ YS R GTP + M + 
Sbjct: 357 IKKSIPNVALTTDIIVGYPNETEEQFEETLSLYDEVQFEHAYTYLYSQRDGTPAAKMKDN 416

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440
           V E+VK  RL  L KK+        +   G+ + VL E   K+    L G +   + V  
Sbjct: 417 VPEDVKKARLQRLNKKVGHYSEKAMNQYEGKTVTVLCEGSSKKDDTVLAGYTEKNKLVNF 476

Query: 441 NSKNHNIGDIIKVRITDVKISTLYG 465
                 IG ++ V I + K  +L G
Sbjct: 477 KGPREAIGKLVNVEIDETKQYSLNG 501


>gi|326443848|ref|ZP_08218582.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Streptomyces
           clavuligerus ATCC 27064]
          Length = 497

 Score =  445 bits (1146), Expect = e-123,   Method: Composition-based stats.
 Identities = 174/453 (38%), Positives = 255/453 (56%), Gaps = 20/453 (4%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDD--ADLIVLNTCHIREKAAEKV 80
           V + + +++YGCQMNV+DS R+  +    GY R     D  AD++V NTC +RE A  K+
Sbjct: 3   VQRSYEIRTYGCQMNVHDSERLSGLLEEAGYVRAAEGSDGDADVVVFNTCAVRENADNKL 62

Query: 81  YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140
           Y  LGR+  +K  R      + + V GC+AQ + + I+ R+P V+VV G     +LP LL
Sbjct: 63  YGNLGRLAPMKTRR----PGMQIAVGGCLAQKDRDTIVSRAPWVDVVFGTHNIGKLPVLL 118

Query: 141 ERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           ERAR  +   V+   S+E     L        R+    A+++I  GC+  CTFC+VP  R
Sbjct: 119 ERARVQEEAQVEIAESLEAFPSTLPT-----RRESAYAAWVSISVGCNNTCTFCIVPALR 173

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G E  R    ++ E   L+  GV EITLLGQNVNA  G  + G++  FS LL +   I+G
Sbjct: 174 GKEKDRRPGDILAEIEALVAEGVSEITLLGQNVNA-YGSDI-GDREAFSKLLRACGRIEG 231

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           L R+R+T+ HPRD +D +I A  +   +MP LH+P+QSGSD +L++M R +    +  II
Sbjct: 232 LERVRFTSPHPRDFTDDVIAAMAETPNVMPQLHMPLQSGSDAVLRAMRRSYRQERFLGII 291

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
           D++R   P  AIS+D IVGFPGET++DF  T+  V +  +A AF+F+YS R GTP + M 
Sbjct: 292 DKVREAIPHAAISTDIIVGFPGETEEDFEQTLHTVREARFANAFTFQYSKRPGTPAATME 351

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKG---KLVGRSPWL 435
            Q+ + V   R   L     E   + N   VG+++EV++ E  G++ G   +L GR+P  
Sbjct: 352 GQLPKEVVQARYERLVVLQEEISWAENKKQVGRVLEVMVAEGEGRKDGATQRLSGRAPDN 411

Query: 436 QSVVL--NSKNHNIGDIIKVRITDVKISTLYGE 466
           + V      +    GD++ V IT      L  E
Sbjct: 412 RLVHFTKPEEEVRPGDVVTVEITYAAPHHLLAE 444


>gi|294675532|ref|YP_003576148.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Prevotella ruminicola 23]
 gi|294471893|gb|ADE81282.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Prevotella ruminicola 23]
          Length = 470

 Score =  445 bits (1146), Expect = e-123,   Method: Composition-based stats.
 Identities = 165/452 (36%), Positives = 261/452 (57%), Gaps = 13/452 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + ++ ++++YGCQMNV DS  +  +    GYE   ++D+AD + LNTC +R+ A +K+Y 
Sbjct: 26  MMKKLYIETYGCQMNVADSEVVASVMQMAGYETTETIDEADAVFLNTCSVRDNAEQKIYH 85

Query: 83  FLGRIRNLKNSRIKEGGD---LLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL 139
            L  +   +  R+K   +   +++ V GC+A+    ++L      ++V GP  Y  LP+L
Sbjct: 86  RLEALDAERRRRLKSNPEAPKMILGVLGCMAERAQRDLLDNH-FADLVAGPDAYLSLPDL 144

Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           + +A  G + ++T+ S  + ++ +     G   K G   F++I  GC+ FC +C+VPYTR
Sbjct: 145 IAQAELGHKAMNTELSTSETYKDVVPQRIGIGHKIG--GFVSIMRGCNNFCHYCIVPYTR 202

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G E SR +  ++ E R L D G  E+TLLGQNVN+++ +  D     F  LL  ++E   
Sbjct: 203 GRERSRDVESILREVRDLRDKGFKEVTLLGQNVNSYKFEDTD-----FPTLLRRVAEEVP 257

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
            +R+R+TTSHP+DMSD  +K   ++  +  ++HLPVQSGSDRILK MNR++T   Y   +
Sbjct: 258 TMRVRFTTSHPKDMSDETLKVIAEVPNVCKHIHLPVQSGSDRILKLMNRKYTREWYMDRV 317

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN-M 378
             IR + PD  +S+D  VG+  ET++D + ++DL+ ++GY  AF FKYS R GT  S  +
Sbjct: 318 HAIRRIIPDCGLSTDIFVGYHSETEEDHQLSLDLMREVGYDSAFMFKYSERPGTYASKHL 377

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQS 437
            + V E  K  RL  L     E     N    G+  +VL+E   K    +L GR+   + 
Sbjct: 378 PDDVPEEEKIRRLNELIALQTEMSAIQNKKDEGKEFDVLVEGFSKRSREQLCGRTEQNKM 437

Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
           VV +   H+IG+ ++VRIT    +TL GE +V
Sbjct: 438 VVFDKGTHHIGETVRVRITGSTSATLLGEAIV 469


>gi|21224132|ref|NP_629911.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Streptomyces
           coelicolor A3(2)]
 gi|81344644|sp|O69963|MIAB_STRCO RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|2995295|emb|CAA18324.1| conserved hypothetical protein SC4H2.08 [Streptomyces coelicolor
           A3(2)]
          Length = 505

 Score =  445 bits (1146), Expect = e-123,   Method: Composition-based stats.
 Identities = 175/451 (38%), Positives = 254/451 (56%), Gaps = 20/451 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNS--MDDADLIVLNTCHIREKAAEKVYS 82
           + + V++YGCQMNV+DS R+  +    GY R       DAD++V NTC +RE A  K+Y 
Sbjct: 14  RTYEVRTYGCQMNVHDSERLSGLLEDAGYVRAPEGADGDADVVVFNTCAVRENADNKLYG 73

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            LG +   K SR      + + V GC+AQ + + I++R+P V+VV G     +LP LLER
Sbjct: 74  NLGHLAPKKASR----PGMQIAVGGCLAQKDRDTIVKRAPWVDVVFGTHNIGKLPVLLER 129

Query: 143 ARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           AR  +   V+   S+E     L        R+    A+++I  GC+  CTFC+VP  RG 
Sbjct: 130 ARVQEEAQVEIAESLEAFPSTLPT-----RRESAYAAWVSISVGCNNTCTFCIVPALRGK 184

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E  R    ++ E   L+  GV EITLLGQNVNA  G  + G++  FS LL +   I GL 
Sbjct: 185 EKDRRPGDILAEVEALVAEGVSEITLLGQNVNA-YGSDI-GDREAFSKLLRACGNIDGLE 242

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+T+ HPRD +D +I A  +    MP LH+P+QSGSD +LK+M R +    Y  II++
Sbjct: 243 RVRFTSPHPRDFTDDVIAAMAETPNAMPQLHMPLQSGSDPVLKAMRRSYRQERYLGIIEK 302

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R+  P  AI++D IVGFPGET++DF  T+ +V +  +AQAF+F+YS R GTP + M  Q
Sbjct: 303 VRAAIPHAAITTDIIVGFPGETEEDFEQTLHVVREARFAQAFTFQYSKRPGTPAAEMENQ 362

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKG---KLVGRSPWLQS 437
           + + V  ER   L     E     N   VG+ +E+++ E  G++ G   +L GR+P  + 
Sbjct: 363 IPKAVVQERYERLVALQEEISWDENKKQVGRTLELMVAEGEGRKDGATHRLSGRAPDNRL 422

Query: 438 VVL--NSKNHNIGDIIKVRITDVKISTLYGE 466
           V      +    GD++ V IT      L  E
Sbjct: 423 VHFTKPDQEVRPGDVVTVEITYAAPHHLLAE 453


>gi|325295239|ref|YP_004281753.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Desulfurobacterium thermolithotrophum DSM 11699]
 gi|325065687|gb|ADY73694.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Desulfurobacterium thermolithotrophum DSM 11699]
          Length = 437

 Score =  445 bits (1145), Expect = e-123,   Method: Composition-based stats.
 Identities = 170/444 (38%), Positives = 272/444 (61%), Gaps = 13/444 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++F++K++GCQMNV DS +M  +  S GYE+ +  ++ADLI++NTC +R K   K YSF+
Sbjct: 2   KKFYIKTFGCQMNVNDSEKMAGILRSLGYEKTDLPEEADLIIVNTCSVRAKPDNKAYSFI 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           G ++ +K    KE  + ++ V GCV Q E E IL R   V++V G   + ++ EL++RA+
Sbjct: 62  GNLKKIK----KEKPETIIAVGGCVPQKEKESIL-RFKHVDLVFGTFNFMKIGELIKRAK 116

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
             +RVV+   S   + +++ ++D     +    A++T+Q GC++FC++C+VP+TRG E S
Sbjct: 117 K-ERVVEILNSKIPEEDKVPLIDSYL--ENPYVAYVTVQRGCNRFCSYCIVPFTRGRERS 173

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
                V+ E ++L + GV E+ LLGQNV+ +  +G+D      +DLLY +SE++G+ R+R
Sbjct: 174 VKPELVLKEVKRLAERGVKEVHLLGQNVDFYNYEGID-----LADLLYMVSEVEGIERIR 228

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +TTSHP   +  +++A  +++ + PY+HLP QSGS +IL+ MNR +T  EY + +  ++ 
Sbjct: 229 FTTSHPCGFNRKIVEAMKNIEKVCPYVHLPPQSGSTKILERMNRGYTREEYTEKVMMLKE 288

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             P +A+S DFIVGFPGET  DF  T+ LV+   + Q F F+YSPR  T  SN  + V +
Sbjct: 289 EIPKVALSGDFIVGFPGETTKDFEETLSLVETCVFDQGFVFEYSPRPFTKASNFKDDVPK 348

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
             K  RL  LQ  LR Q    N   +G I EVL+E    +  +L GR+   + VV +   
Sbjct: 349 EEKNRRLQELQNLLRVQAEEKNKKRLGCIEEVLVEGKSPKGKELSGRTKDNKLVVFDGSE 408

Query: 445 HNIGDIIKVRITDVKISTLYGELV 468
             +G  +++ IT+     L G+L+
Sbjct: 409 ELVGKFVEIEITETSPFFLKGKLL 432


>gi|329939964|ref|ZP_08289246.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Streptomyces
           griseoaurantiacus M045]
 gi|329300790|gb|EGG44686.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Streptomyces
           griseoaurantiacus M045]
          Length = 499

 Score =  445 bits (1145), Expect = e-123,   Method: Composition-based stats.
 Identities = 173/451 (38%), Positives = 259/451 (57%), Gaps = 20/451 (4%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERV--NSMDDADLIVLNTCHIREKAAEK 79
             P+ + +++YGCQMNV+DS R+  +    GY R   +S  DAD++V NTC +RE A  +
Sbjct: 4   PAPKSYEIRTYGCQMNVHDSERLSGLLEDAGYVRAPEDSDGDADVVVFNTCAVRENADNR 63

Query: 80  VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL 139
           +Y  LGR+   K SR      + + V GC+AQ + + I++++P V+VV G     +LP L
Sbjct: 64  LYGNLGRLAPRKASR----PGMQIAVGGCLAQKDRDTIVKKAPWVDVVFGTHNIGKLPVL 119

Query: 140 LERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
           LERAR  +   V+   S+E     L        R+    A+++I  GC+  CTFC+VP  
Sbjct: 120 LERARVQEEAQVEIAESLEAFPSTLPT-----RRESAYAAWVSISVGCNNTCTFCIVPAL 174

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258
           RG E  R    V+ E   L+  GV EITLLGQNVNA  G  + G++  FS LL +   I+
Sbjct: 175 RGKEKDRRPGDVLAEVEALVAEGVSEITLLGQNVNA-YGSDI-GDREAFSKLLRACGNIE 232

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           GL R+R+T+ HPRD +D +I+A  +   +MP LH+P+QSGSD +LK+M R +    Y  I
Sbjct: 233 GLERVRFTSPHPRDFTDDVIEAMAETPNVMPQLHMPLQSGSDTVLKAMRRSYRQERYLGI 292

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           I+++R+  P  AI++D IVGFPGET++DF  T+ +V +  +AQAF+F+YS R GTP + M
Sbjct: 293 IEKVRAAIPHAAITTDIIVGFPGETEEDFEQTLHVVREARFAQAFTFQYSKRPGTPAATM 352

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKG---KLVGRSPW 434
            +Q+ + V   R   L     E     N   VG+ +E+++ E  G++ G   +L GR+P 
Sbjct: 353 EDQIPKKVVQARYERLVALQEEISWEENKKQVGRTLELMVAEGEGRKDGATHRLSGRAPD 412

Query: 435 LQSVVLNSK--NHNIGDIIKVRITDVKISTL 463
            + V           GD++ V +T      L
Sbjct: 413 NRLVHFTKPEQEVRPGDMVTVEVTYAAPHHL 443


>gi|284048550|ref|YP_003398889.1| RNA modification enzyme, MiaB family [Acidaminococcus fermentans
           DSM 20731]
 gi|283952771|gb|ADB47574.1| RNA modification enzyme, MiaB family [Acidaminococcus fermentans
           DSM 20731]
          Length = 442

 Score =  445 bits (1145), Expect = e-123,   Method: Composition-based stats.
 Identities = 158/450 (35%), Positives = 244/450 (54%), Gaps = 11/450 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + + + + +YGCQMN  DS          GY       DAD+I++NTC +RE A +K+  
Sbjct: 1   MTKHYTILNYGCQMNESDSEHYAGQLSDLGYHYTEDYHDADVILINTCCVRESAEKKILG 60

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +G ++ +K          ++ V GC+AQ +GE+ L++ P V++++G         +L+ 
Sbjct: 61  KIGEMKQVKRED----PSKVLCVTGCMAQKDGEDFLKKYPQVDLLIGTAHVNNFSAILQD 116

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
                +     ++  D        +G + RK    A++ I  GC+ FCT+C+VPY RG E
Sbjct: 117 YLHQTQRKSGMFN--DLTVMPREFEGHFVRKSSYAAWVPIMYGCNNFCTYCIVPYVRGRE 174

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SRS   + +E RK +D G  E TLLGQNVN+  GK   G+K  F+ LL  +  I G+ R
Sbjct: 175 RSRSAEAICEEIRKAVDQGYREFTLLGQNVNS-YGKDR-GDKDAFAALLRQVDAIPGVER 232

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +RY TSHPRDMS+ LI+   +   +  + H+PVQSGS RI+++MNR +T   Y  ++D I
Sbjct: 233 VRYMTSHPRDMSEELIRTVAESKHVCKHFHIPVQSGSTRIMQAMNRGYTRESYLHLVDTI 292

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R   P+  +++D IVGFPGET++DF+ T+ L D++ Y  A++F YS R GTP + M  QV
Sbjct: 293 RKYVPEAVLTTDIIVGFPGETEEDFQETLSLFDRVSYDAAYTFIYSKRSGTPAAAMEAQV 352

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVLN 441
            E VK +RL  L +      +  N   VG+ + V++E       K   GR+   + V+  
Sbjct: 353 PEAVKKDRLNRLMELQNRHSLKHNQKLVGRTLPVMVEGLSHNNSKMWSGRTDGNKLVLWP 412

Query: 442 SKNH--NIGDIIKVRITDVKISTLYGELVV 469
                 N GD++ V I   +   L G   +
Sbjct: 413 VGERFFNPGDLVPVTIETAQTWLLKGRAAL 442


>gi|218437115|ref|YP_002375444.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Cyanothece sp.
           PCC 7424]
 gi|229890508|sp|B7K993|MIAB_CYAP7 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|218169843|gb|ACK68576.1| RNA modification enzyme, MiaB family [Cyanothece sp. PCC 7424]
          Length = 454

 Score =  445 bits (1145), Expect = e-123,   Method: Composition-based stats.
 Identities = 181/454 (39%), Positives = 274/454 (60%), Gaps = 23/454 (5%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +R+ + ++GCQMN  DS RM  +    GY+  +  ++ADL++ NTC IR+ A +KVYS+L
Sbjct: 6   RRYHITTFGCQMNKADSERMAGILEDIGYQWSDDPNEADLVLYNTCTIRDNAEQKVYSYL 65

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR    K+       DL ++VAGCVAQ EGE++LRR P +++V+GPQ   RL +LL+   
Sbjct: 66  GRQAKRKHE----KPDLTLIVAGCVAQQEGEKLLRRVPELDLVMGPQHANRLQDLLQEVL 121

Query: 145 FGKRVVDTD--YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            G +VV T+  + VED  +          R+  VTA++ +  GC++ CT+CVVP  RG+E
Sbjct: 122 AGNQVVATEPIHIVEDITKP--------RRESTVTAWVNVIYGCNERCTYCVVPNVRGVE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG------EKCTFSDLLYSLSE 256
            SR+   +  E  +L   G  EITLLGQN++A  G+ L G       + T +DLLY +++
Sbjct: 174 QSRTPQAIRAEMVELGQQGYKEITLLGQNIDA-YGRDLPGVTESGRHQHTLTDLLYYVND 232

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           + G+ R+R+ TSHPR  ++ LI A  +L  +  + H+P QSG + +LK+M R +T   YR
Sbjct: 233 VPGIERIRFATSHPRYFTERLIVACKELPKVCEHFHIPFQSGDNDLLKAMKRGYTHERYR 292

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
           QIID+IR   PD +IS+D IVGFPGET+  F  T+ LV+ IG+ Q  +  YSPR GTP +
Sbjct: 293 QIIDKIREYMPDASISADAIVGFPGETEAQFENTLKLVEDIGFDQLNTAAYSPRPGTPAA 352

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWL 435
               Q+ E VK++RL  L   +  +    +   +G+I EVL+E    K+  +++GR+   
Sbjct: 353 LWDNQLSEEVKSDRLQRLNHLVAIKAAERSQRYLGRIEEVLVEDVNPKDLTQVMGRTRGN 412

Query: 436 QSVVLNSK-NHNIGDIIKVRITDVKISTLYGELV 468
           +        N   G +++V+ITDV+  +L GE V
Sbjct: 413 RLTFFTGDINQLKGQLVEVKITDVRAFSLTGEPV 446


>gi|169350629|ref|ZP_02867567.1| hypothetical protein CLOSPI_01401 [Clostridium spiroforme DSM 1552]
 gi|169292683|gb|EDS74816.1| hypothetical protein CLOSPI_01401 [Clostridium spiroforme DSM 1552]
          Length = 481

 Score =  445 bits (1145), Expect = e-123,   Method: Composition-based stats.
 Identities = 173/466 (37%), Positives = 268/466 (57%), Gaps = 15/466 (3%)

Query: 6   KLIGVAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLI 65
           +   V H+ + ++ +  V +++++++YGCQ N  DS  +  +  S  Y   + + +AD+I
Sbjct: 26  RYDDVYHVPADMI-KAGVGKKYYIQTYGCQANERDSETLSGILESMSYRATDEIKEADII 84

Query: 66  VLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQ--AEGEEILRRSPI 123
           +LNTC IRE A EKV+  +G ++NLK    K   +L+  + GC+AQ       IL + P 
Sbjct: 85  ILNTCAIRENAEEKVFGKVGYVKNLK----KTNPNLIFAMCGCMAQEEVVVNRILEKHPH 140

Query: 124 VNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQ 183
           V+++ G    +RLPELL+ A + K ++   +S E      + V     R     A++ I 
Sbjct: 141 VDLIFGTHNIHRLPELLKEAFYSKEMIIEVWSKEGDVIENAPV----KRDSKHKAWVNIM 196

Query: 184 EGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
            GC+KFCT+C+VPYTRG E SR    +V E   L+ +G  EITLLGQNVN+  GK L G 
Sbjct: 197 YGCNKFCTYCIVPYTRGKERSRLAKDIVKEVESLVADGYQEITLLGQNVNS-YGKDL-GN 254

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
              FS+LL  +++  G+ R+R+TTSHP D S+ +IK     D +MP +HLPVQSG++ +L
Sbjct: 255 DYNFSNLLEDVAK-TGIPRIRFTTSHPWDFSEDMIKIIAKYDNIMPAIHLPVQSGNNEVL 313

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           K M RR+T  +Y ++  +I+   PD  I++D IVGFP ET + +  T+ L  +  Y  A+
Sbjct: 314 KLMGRRYTREQYLELFYKIKKYIPDCTITTDIIVGFPNETHEQYLDTLSLYQECEYDLAY 373

Query: 364 SFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK 423
           +F YSPR GTP + M++ V    K +RL  L + + E+    N   + + +EVL++   K
Sbjct: 374 TFVYSPREGTPAAKMVDNVSSEEKDQRLYRLNEIVNEKAYKQNQRFLNKTVEVLVDGTSK 433

Query: 424 EKG-KLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           +    L G +   + V       +IG IIKV+IT+ K   L GE +
Sbjct: 434 KDDTMLTGYTRHQKLVNFKGNPKDIGKIIKVKITEAKTWALKGEAI 479


>gi|307154937|ref|YP_003890321.1| RNA modification enzyme, MiaB family [Cyanothece sp. PCC 7822]
 gi|306985165|gb|ADN17046.1| RNA modification enzyme, MiaB family [Cyanothece sp. PCC 7822]
          Length = 446

 Score =  445 bits (1145), Expect = e-123,   Method: Composition-based stats.
 Identities = 177/454 (38%), Positives = 276/454 (60%), Gaps = 23/454 (5%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +R+ + ++GCQMN  DS RM  +    GY+     ++ADL++ NTC IR+ A +KVYS+L
Sbjct: 6   RRYHITTFGCQMNKADSERMAGILEDLGYQWSEDPNEADLVLYNTCTIRDNAEQKVYSYL 65

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR    K+       DL ++VAGCVAQ EGE++LRR P +++V+GPQ    L +LL++  
Sbjct: 66  GRQAKRKHE----KPDLTLIVAGCVAQQEGEKLLRRVPELDLVMGPQYANLLQDLLKQVE 121

Query: 145 FGKRVVDTD--YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            G ++V T+  + VED  +          R+  V+A++ +  GC++ C++CVVP  RG+E
Sbjct: 122 DGHQIVATEPIHIVEDITKP--------RRESRVSAWVNVIYGCNERCSYCVVPNVRGVE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG------EKCTFSDLLYSLSE 256
            SR+   +  E  +L   G  EITLLGQN++A  G+ L G         T +DLLY +++
Sbjct: 174 QSRTPQAIRAEMEELGRQGYKEITLLGQNIDA-YGRDLPGVTATGRHLHTLTDLLYYVND 232

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           + G+ R+R+ TSHPR  ++ LI A  +L  +  + H+P QSG ++ILK+M R +T  +YR
Sbjct: 233 VPGIERIRFATSHPRYFTERLIVACKELPKVCEHFHIPFQSGDNQILKAMKRGYTQEKYR 292

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
           QII++IRS+ PD +IS+D IVGFPGET++ F  T+ LVD IG+ Q  +  YSPR GTP +
Sbjct: 293 QIIEKIRSLMPDASISADAIVGFPGETEEQFENTLKLVDDIGFDQLNTAAYSPRPGTPAA 352

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWL 435
               Q+ E VK++RL  L   +  +    +   +G+  EVL+E+   K   +++GR+   
Sbjct: 353 LWDNQLSEEVKSDRLQRLNHLVGIKAAERSQRYLGRTEEVLVEEVNPKNPTQVMGRTRGN 412

Query: 436 QSVVLNSK-NHNIGDIIKVRITDVKISTLYGELV 468
           +        N   G I+ V+IT+V+  +L G++V
Sbjct: 413 RLTFFEGDINQLKGQIVSVKITEVRPFSLSGKIV 446


>gi|227549086|ref|ZP_03979135.1| tRNA 2-methylthioadenosine synthase [Corynebacterium
           lipophiloflavum DSM 44291]
 gi|227078868|gb|EEI16831.1| tRNA 2-methylthioadenosine synthase [Corynebacterium
           lipophiloflavum DSM 44291]
          Length = 512

 Score =  445 bits (1144), Expect = e-123,   Method: Composition-based stats.
 Identities = 157/468 (33%), Positives = 256/468 (54%), Gaps = 21/468 (4%)

Query: 12  HMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCH 71
              ++  +Q    + + V+++GCQMNV+DS R+  M    GY       + DL+V NTC 
Sbjct: 6   QAQNKPTNQADPARTYEVRTFGCQMNVHDSERLSGMLEEAGYVAAADGAEPDLVVFNTCA 65

Query: 72  IREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ 131
           +R+ A +++Y  LG++++ K++       + + V GC+AQ + + ++ ++P V+ V G  
Sbjct: 66  VRDNADQRLYGSLGQLKHTKDNH----PGMQIAVGGCLAQKDRDTVIEKAPWVDAVFGTH 121

Query: 132 TYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCT 191
               LP LL+RAR  +          + F  +        R+     +++I  GC+  CT
Sbjct: 122 NISALPALLDRARVSEEAQVEVVEALEVFPSVLPA----KRESSYAGWVSISVGCNNTCT 177

Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE----KCTF 247
           FC+VP  RG E+ R    ++ E   L+  GV E+TLLGQNVNA+    +D E    +  F
Sbjct: 178 FCIVPSLRGKELDRRPGDILAEVTALVQQGVSEVTLLGQNVNAYGVNFVDEELGRDRSAF 237

Query: 248 SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307
           S LL +  EI+GL R+R+T+ HP + +  +I A  +   + P LH+P+QSGSD++LK M 
Sbjct: 238 SKLLRACGEIQGLERVRFTSPHPAEFTSDVIDAMAETPNVCPQLHMPLQSGSDKVLKDMR 297

Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           R + + ++  I+D +R+  P  +I++D IVGFPGET++DF+AT+D+V+K  +  AF+F+Y
Sbjct: 298 RSYRSKKFLGILDEVRAKLPHASITTDIIVGFPGETEEDFQATLDVVEKARFTSAFTFQY 357

Query: 368 SPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG- 426
           SPR GTP + M  QV + V  ER   L           N   VG  +E+L++  G +K  
Sbjct: 358 SPRPGTPAATMDNQVPKEVVQERFERLVALQERISAEENAKLVGTEVELLVQAAGGKKND 417

Query: 427 ---KLVGRSPWLQSVVL-----NSKNHNIGDIIKVRITDVKISTLYGE 466
              ++ GR+   + V          +   GDI+ V +TD K   L  +
Sbjct: 418 STKRMSGRARDGRLVHFAVHGLIDASVRPGDIVTVTVTDAKPHYLIAD 465


>gi|72161215|ref|YP_288872.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Thermobifida
           fusca YX]
 gi|123774758|sp|Q47RR8|MIAB_THEFY RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|71914947|gb|AAZ54849.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Thermobifida fusca YX]
          Length = 494

 Score =  445 bits (1144), Expect = e-123,   Method: Composition-based stats.
 Identities = 168/450 (37%), Positives = 260/450 (57%), Gaps = 19/450 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + + V++YGCQMNV+DS R+  +  + GY+R       D++V NTC +RE A  ++Y  L
Sbjct: 5   RTYQVRTYGCQMNVHDSERLSGLLEAAGYQRAAEGTTPDVVVFNTCAVRENADNRLYGNL 64

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           G++R +K++      D+ + V GC+AQ +  EI+RR+P V+VV G      LP LLERAR
Sbjct: 65  GQLRPVKDA----NPDMQIAVGGCLAQKDRGEIIRRAPWVDVVFGTHNIGSLPALLERAR 120

Query: 145 FGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             +   V+   S+E     L        R+    A++ I  GC+  CTFC+VP  RG E 
Sbjct: 121 VQREAQVEIVESLERFPSTLPT-----RRESVYAAWVAISVGCNNTCTFCIVPALRGKEK 175

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
            R    ++ E R ++  G  E+TLLGQNVNA+  +   G++  FS LL +  EI+GL R+
Sbjct: 176 DRRPGDILAEIRAVVAEGAIEVTLLGQNVNAYGSEF--GDRQAFSKLLRACGEIEGLERV 233

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+T+ HPRD +D +I A  +   +MP LH+P+QSGSDRIL++M R + A  + +I++++R
Sbjct: 234 RFTSPHPRDFTDDVIAAMAETPNVMPQLHMPLQSGSDRILRAMRRSYRAERFLRIVEKVR 293

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              PD AI++D IVGFPGET++DF  T+ +++++ +A AF+F+YS R GTP ++M  QV 
Sbjct: 294 EAIPDAAITTDVIVGFPGETEEDFAETLRVMEEVRFAHAFTFQYSKRPGTPAASMDNQVP 353

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKG---KLVGRSPWLQSVV 439
             V  ER   L +         N   VG+ +EVL+ E  G++     ++ GR+   + V 
Sbjct: 354 REVVKERYQRLLELQERISEEENAKFVGREVEVLVAEGEGRKDDVHRRMSGRARDNRLVH 413

Query: 440 L---NSKNHNIGDIIKVRITDVKISTLYGE 466
                      GD++ V +T      L  +
Sbjct: 414 FAVDEGVTVRPGDMVTVEVTYAAPHHLVAD 443


>gi|150009019|ref|YP_001303762.1| (dimethylallyl)adenosine tRNA methylthiotransferase
           [Parabacteroides distasonis ATCC 8503]
 gi|255014851|ref|ZP_05286977.1| putative tRNA-i(6)A37 modification enzyme MiaB [Bacteroides sp.
           2_1_7]
 gi|262383912|ref|ZP_06077048.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacteroides sp. 2_1_33B]
 gi|298375748|ref|ZP_06985704.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacteroides sp. 3_1_19]
 gi|229890584|sp|A6LEM6|MIAB_PARD8 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|149937443|gb|ABR44140.1| conserved hypothetical protein, putative tRNA-i(6)A37 modification
           enzyme MiaB [Parabacteroides distasonis ATCC 8503]
 gi|262294810|gb|EEY82742.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacteroides sp. 2_1_33B]
 gi|298266785|gb|EFI08442.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacteroides sp. 3_1_19]
          Length = 457

 Score =  445 bits (1144), Expect = e-123,   Method: Composition-based stats.
 Identities = 162/446 (36%), Positives = 258/446 (57%), Gaps = 11/446 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F+++YGCQMNV DS  +  +    GY    ++++AD I +NTC +R+ A +K+Y  L
Sbjct: 19  RKLFIETYGCQMNVADSEVVASIMKMDGYSMTENIEEADAIFVNTCSVRDNAEQKIYGRL 78

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
              ++LK         L+V V GC+A+   E+++      ++VVGP +Y  LP L+    
Sbjct: 79  QYFQSLKRK----KKSLIVGVLGCMAERVKEDLIHVH-HADLVVGPDSYLDLPNLVGAVE 133

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G++ ++ + S ++ ++ +  +        G   F++I  GC+ FCT+C+VPYTRG E S
Sbjct: 134 HGEKAINVELSTQETYKDVIPLKLPGVHISG---FVSIMRGCNNFCTYCIVPYTRGRERS 190

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R +  +++E R + + G  E+TLLGQNVN+      +GE  TF  LL  +++    +R+R
Sbjct: 191 RDIESILNEIRDMHEKGFKEVTLLGQNVNS-YSFEKEGETITFPILLDRVAKEVPDMRIR 249

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +TTSHP+DMSD  ++     D +  ++HLP QSGS RILK MNR++T   Y   I  IR 
Sbjct: 250 FTTSHPKDMSDDTLRVIAANDNICKFIHLPAQSGSSRILKVMNRKYTREWYLDRIAAIRR 309

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQVD 383
           + PD AIS+D   GF  ET++D++ T+ L+ ++GY  AF FKYS R GT  + ++ + V 
Sbjct: 310 IVPDCAISTDLFCGFHSETEEDYQETLSLMREVGYDSAFLFKYSERPGTYAASHLEDNVP 369

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNS 442
           E  K  RL  +     +     N   +G+  EVLIE   K    +L GR+   + V+ + 
Sbjct: 370 EEEKVRRLQGMIDLQNKLSEESNLRDIGKTFEVLIEGFSKRSREQLFGRTSQNKVVIFDK 429

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
           KN+++G  IKV+I     +TL+GE V
Sbjct: 430 KNYHVGQFIKVKIHKASSATLFGEPV 455


>gi|229495400|ref|ZP_04389135.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Porphyromonas
           endodontalis ATCC 35406]
 gi|229317843|gb|EEN83741.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Porphyromonas
           endodontalis ATCC 35406]
          Length = 462

 Score =  445 bits (1144), Expect = e-123,   Method: Composition-based stats.
 Identities = 155/448 (34%), Positives = 246/448 (54%), Gaps = 11/448 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++  +++YGCQMNV DS  +  +  + GYE  +S DDAD I++NTC +RE A +KV + L
Sbjct: 11  KKIHIETYGCQMNVADSEVVAAIMETAGYEMSDSPDDADAILINTCSVRENAEKKVLNRL 70

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
                L+    K G   ++ V GC+A+   +E++ +    ++V GP  Y  LP L     
Sbjct: 71  EHYNQLRR---KHGKPSIIGVLGCMAERVRQELIEKH-GADIVAGPDAYNDLPNLFAAVE 126

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G++ ++ D S  + +  +  +         +T F++I  GCD +CT+C+VPYTRG E S
Sbjct: 127 TGEKAINIDLSRTETYRDVIPLKLAGLH---ITGFVSIMRGCDNYCTYCIVPYTRGHERS 183

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK--GLDGEKCTFSDLLYSLSEIKGLVR 262
           R +  ++ E   +++ G  E+TLLGQNVN++R +    D     F+DLL +++E    +R
Sbjct: 184 REVESILREIDHMVELGYREVTLLGQNVNSYRREAATPDAPPFDFADLLQAVAERAPKMR 243

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+T+ HP+DMSD  I        +   +HLPVQSGS+ ILK M R +T   Y   +  I
Sbjct: 244 IRFTSPHPKDMSDKTIAVMARYPNICKQIHLPVQSGSNHILKQMKRGYTREWYLDRVRAI 303

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN-MLEQ 381
           R   P+ +I +D   GF GE+++DF+ T+ L+ ++ +  AF FKYS R GT  +  + + 
Sbjct: 304 REAMPECSIGTDMFCGFCGESEEDFQETLRLMREVAFDSAFMFKYSERPGTFAAKHLQDD 363

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVL 440
           V E  K  RL  +     E  ++ N   +G+  EVL+E   K    +L GR+   + VV 
Sbjct: 364 VPEETKIRRLNEMIALQNELSLASNKRDIGKQFEVLVEGTSKRSREELFGRTSQNKVVVF 423

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
             +   IG  + V I D   +TL G+ V
Sbjct: 424 PKEQARIGQFVVVEIHDATSATLLGKEV 451


>gi|256784788|ref|ZP_05523219.1| hypothetical protein SlivT_09878 [Streptomyces lividans TK24]
 gi|289768676|ref|ZP_06528054.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Streptomyces lividans
           TK24]
 gi|289698875|gb|EFD66304.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Streptomyces lividans
           TK24]
          Length = 505

 Score =  445 bits (1144), Expect = e-123,   Method: Composition-based stats.
 Identities = 175/451 (38%), Positives = 254/451 (56%), Gaps = 20/451 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNS--MDDADLIVLNTCHIREKAAEKVYS 82
           + + V++YGCQMNV+DS R+  +    GY R       DAD++V NTC +RE A  K+Y 
Sbjct: 14  RTYEVRTYGCQMNVHDSERLSGLLEDAGYVRAPEGADGDADVVVFNTCAVRENADNKLYG 73

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            LG +   K SR      + + V GC+AQ + + I++R+P V+VV G     +LP LLER
Sbjct: 74  NLGHLAPKKASR----PGMQIAVGGCLAQKDRDTIVKRAPWVDVVFGTHNIGKLPVLLER 129

Query: 143 ARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           AR  +   V+   S+E     L        R+    A+++I  GC+  CTFC+VP  RG 
Sbjct: 130 ARVQEEAQVEIAESLEAFPSTLPT-----RRESAYAAWVSISVGCNNTCTFCIVPALRGK 184

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E  R    ++ E   L+  GV EITLLGQNVNA  G  + G++  FS LL +   I GL 
Sbjct: 185 EKDRRPGDILAEVEALVAEGVSEITLLGQNVNA-YGSDI-GDREAFSKLLRACGNINGLE 242

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+T+ HPRD +D +I A  +    MP LH+P+QSGSD +LK+M R +    Y  II++
Sbjct: 243 RVRFTSPHPRDFTDDVIAAMAETPNAMPQLHMPLQSGSDPVLKAMRRSYRQERYLGIIEK 302

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R+  P  AI++D IVGFPGET++DF  T+ +V +  +AQAF+F+YS R GTP + M  Q
Sbjct: 303 VRAAIPHAAITTDIIVGFPGETEEDFEQTLHVVREARFAQAFTFQYSKRPGTPAAEMENQ 362

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKG---KLVGRSPWLQS 437
           + + V  ER   L     E     N   VG+ +E+++ E  G++ G   +L GR+P  + 
Sbjct: 363 IPKAVVQERYERLVALQEEISWDENKKQVGRTLELMVAEGEGRKDGATHRLSGRAPDNRL 422

Query: 438 VVL--NSKNHNIGDIIKVRITDVKISTLYGE 466
           V      +    GD++ V IT      L  E
Sbjct: 423 VHFTKPDQEVRPGDVVTVEITYAAPHHLLAE 453


>gi|282850159|ref|ZP_06259538.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Veillonella parvula ATCC
           17745]
 gi|282579652|gb|EFB85056.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Veillonella parvula ATCC
           17745]
          Length = 437

 Score =  445 bits (1144), Expect = e-122,   Method: Composition-based stats.
 Identities = 156/446 (34%), Positives = 249/446 (55%), Gaps = 13/446 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + +++ +YGCQMN  DS R+     S GY    +++ ADLI+LNTC +RE A  KVY  +
Sbjct: 2   KSYYIYTYGCQMNTADSERLSHQLESVGYIPTENVETADLILLNTCAVRENAETKVYGRI 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           G ++ LK    +   +L++ V GC+AQ    E+ +R+P +++V+G      + E++E  +
Sbjct: 62  GELKRLK----RNNKNLIIAVTGCMAQKNQAEMFKRAPHIDIVLGTHNIQHINEMIEEVQ 117

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G       + +    +   + +          A++ I  GC+KFCT+C+VP+ RG EIS
Sbjct: 118 HGHT-----HQISVDMDNSVLPELEAKPNGSFYAWVPIMNGCNKFCTYCIVPHVRGREIS 172

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R +  +V E   L   G  EITLLGQNVN++     DG    F  L+ +L  I G+ R+R
Sbjct: 173 RPVEAIVKEVTDLGVKGFKEITLLGQNVNSYGLDFKDG--TDFGTLVDALDGIPGIERIR 230

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           Y TSHP+DMS  +I A G    ++ +LHLP+QSGS+RILK MNR +T   Y++++   R 
Sbjct: 231 YMTSHPQDMSKSMIDALGRSSNIVTHLHLPIQSGSNRILKKMNRHYTVEHYKELLSYCRE 290

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
              D+ +++D IVGFPGET++DF+AT+ L+  + Y  A++F YS R GTP + M +Q+ E
Sbjct: 291 KIKDVVVTTDIIVGFPGETEEDFQATLQLLKDVRYDMAYTFIYSKRSGTPAATMDDQIPE 350

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLNSK 443
            +K  RL  L     E     N    GQ+ ++++E    +++    GR+   + V+    
Sbjct: 351 EIKRVRLQILMDVQNEISYELNKPMEGQVFDIIVEGPSPRDEDMWFGRTSGNKMVLFPKD 410

Query: 444 NHN-IGDIIKVRITDVKISTLYGELV 468
           +   IG  +   I   +    YG ++
Sbjct: 411 DSLSIGQTVPAHIDKAQTWVCYGSIL 436


>gi|291436867|ref|ZP_06576257.1| RNA modification enzyme [Streptomyces ghanaensis ATCC 14672]
 gi|291339762|gb|EFE66718.1| RNA modification enzyme [Streptomyces ghanaensis ATCC 14672]
          Length = 505

 Score =  445 bits (1144), Expect = e-122,   Method: Composition-based stats.
 Identities = 174/451 (38%), Positives = 252/451 (55%), Gaps = 20/451 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDD--ADLIVLNTCHIREKAAEKVYS 82
           + + V++YGCQMNV+DS R+  +    GY R     D  AD++V NTC +RE A  K+Y 
Sbjct: 14  RTYEVRTYGCQMNVHDSERLAGLLEDAGYVRAPEGSDGDADVVVFNTCAVRENADNKLYG 73

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            LG +   K  R      + + V GC+AQ + + I++R+P V+VV G     +LP LLER
Sbjct: 74  NLGHLAPKKARR----PGMQIAVGGCLAQKDRDTIVKRAPWVDVVFGTHNIGKLPVLLER 129

Query: 143 ARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           AR  +   V+   S+E     L        R+    A+++I  GC+  CTFC+VP  RG 
Sbjct: 130 ARVQEEAQVEIAESLEAFPSTLPT-----RRESAYAAWVSISVGCNNTCTFCIVPALRGK 184

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E  R    ++ E   L+  GV EITLLGQNVNA  G  + G++  FS LL +   I GL 
Sbjct: 185 EKDRRPGDILAEIEALVAEGVSEITLLGQNVNA-YGSDI-GDREAFSKLLRACGRIDGLE 242

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+T+ HPRD +D +I A  +   +MP LH+P+QSGSD +LK+M R +    Y  II++
Sbjct: 243 RVRFTSPHPRDFTDDVIAAMAETPNVMPQLHMPLQSGSDAVLKAMRRSYRQERYLGIIEK 302

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R+  P  AIS+D IVGFPGET++DF  T+ +V +  +AQAF+F+YS R GTP + M  Q
Sbjct: 303 VRAAIPHAAISTDIIVGFPGETEEDFEQTLHVVREARFAQAFTFQYSKRPGTPAAEMDGQ 362

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKG---KLVGRSPWLQS 437
           + + V  ER   L     E     N   VG+ +E+++ E  G++     +L GR+P  + 
Sbjct: 363 IPKKVVQERYERLVALQEEISWEENKKQVGRTLELMVAEGEGRKDDTTHRLSGRAPDNRL 422

Query: 438 VVLNSK--NHNIGDIIKVRITDVKISTLYGE 466
           V           GD++ V IT      L  E
Sbjct: 423 VHFTKPEQEVRPGDVVTVEITYAAPHHLLAE 453


>gi|229890676|sp|A0QIR4|MIAB_MYCA1 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
          Length = 715

 Score =  444 bits (1143), Expect = e-122,   Method: Composition-based stats.
 Identities = 169/466 (36%), Positives = 260/466 (55%), Gaps = 20/466 (4%)

Query: 12  HMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNS-MDDADLIVLNTC 70
            + S +       + + V++YGCQMNV+DS R+  +  + GY R     + AD++V NTC
Sbjct: 16  PVTSTVARDVSGVRTYQVRTYGCQMNVHDSERLAGLLEAAGYRRAAEGAEVADVVVFNTC 75

Query: 71  HIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGP 130
            +RE A  K+Y  L  +   K    +    + + V GC+AQ + E +LRR+P V+VV G 
Sbjct: 76  AVRENADNKLYGNLSHLAPRK----RSNPQMQIAVGGCLAQKDREAVLRRAPWVDVVFGT 131

Query: 131 QTYYRLPELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKF 189
                LP LLERAR  K   V+   +++     L        R+    A+++I  GC+  
Sbjct: 132 HNIGSLPTLLERARHNKAAQVEIAEALQQFPSSLPSA-----RESAYAAWVSISVGCNNS 186

Query: 190 CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG----EKC 245
           CTFC+VP  RG E+ RS   ++ E R L+ +GV E+TLLGQNVNA+     D     ++ 
Sbjct: 187 CTFCIVPSLRGKEVDRSPDDILAEVRSLVADGVLEVTLLGQNVNAYGVSFADPALPRDRG 246

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
            F+ LL +  EI GL R+R+T+ HP + +D +I+A      + P LH+P+QSGSDR+L++
Sbjct: 247 AFARLLRACGEIDGLERVRFTSPHPAEFTDDVIEAMAQTPNVCPALHMPLQSGSDRVLRA 306

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           M R + A  Y  IIDR+R+  P  AI++D IVGFPGET++DF AT+D+V +  +A AF+F
Sbjct: 307 MRRSYRAERYLGIIDRVRAAMPHAAITTDLIVGFPGETEEDFAATLDVVRRARFAAAFTF 366

Query: 366 KYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKE 424
           +YS R GTP + +  Q+ + V  ER   L +      +  N A VGQ +E+L+    G++
Sbjct: 367 QYSKRPGTPAAELDGQIPKAVVQERYERLVELQESISLQGNQALVGQTVELLVATGEGRK 426

Query: 425 KG---KLVGRSPWLQSVVLNSKN-HNIGDIIKVRITDVKISTLYGE 466
                ++ GR+   + V   + +    GD++   IT      L  +
Sbjct: 427 DSATARMSGRARDGRLVHFAADDRVRPGDLVTTVITGAAPHHLIAD 472


>gi|225631339|ref|ZP_03788011.1| tRNA-i(6)A37 modification enzyme MiaB [Wolbachia endosymbiont of
           Muscidifurax uniraptor]
 gi|225590961|gb|EEH12171.1| tRNA-i(6)A37 modification enzyme MiaB [Wolbachia endosymbiont of
           Muscidifurax uniraptor]
          Length = 439

 Score =  444 bits (1143), Expect = e-122,   Method: Composition-based stats.
 Identities = 233/444 (52%), Positives = 317/444 (71%), Gaps = 13/444 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +  ++K+YGCQMNVYDS+ ME++    G+  V+    ADL++LNTCHIREKAAEK+YS L
Sbjct: 2   KGLYIKTYGCQMNVYDSVLMENVIKPLGFNVVSDAGKADLVILNTCHIREKAAEKLYSEL 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           G+I +L+         + +VVAGCVAQAEGEE+ RR+P V++VVGPQ+   LPEL+ +A 
Sbjct: 62  GKIHSLRKE-------MTIVVAGCVAQAEGEEVFRRAPFVDIVVGPQSIATLPELIVKAS 114

Query: 145 FGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             K  V++TD+    KF++L   D  Y   +G +AFL IQEGCDKFCTFCVVPYTRG E 
Sbjct: 115 RSKGHVINTDFPEVAKFDKLP--DECYGNSQGSSAFLAIQEGCDKFCTFCVVPYTRGAEY 172

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR ++++  EA KL+ NG  EI LLGQNVNA+ G+  +GE      L+  +++I+ L R+
Sbjct: 173 SRPVNEIFHEALKLVANGANEINLLGQNVNAYHGE-CEGEVWDLGKLISHIAKIEKLERI 231

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           RYTTSHPRDM + L  AH +   LMP++HLPVQSGS++IL +MNR+HTA EY +IIDR R
Sbjct: 232 RYTTSHPRDMHESLYLAHAEEPKLMPFVHLPVQSGSNKILHAMNRKHTAEEYLEIIDRFR 291

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
            ++P+I  SSDFIVGFPGET+ DF  TM LV+K+ YAQA+SFKYSPR GTPG+   +QV 
Sbjct: 292 KLKPEIEFSSDFIVGFPGETEKDFEETMKLVEKVRYAQAYSFKYSPRPGTPGAERKDQVP 351

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKGKLVGRSPWLQSVVLNS 442
           E VK ERLL LQK + +QQ+ FN + VG+ I VL  +K GK + +++G+SP++QSV ++ 
Sbjct: 352 EEVKTERLLRLQKLISKQQLEFNQSMVGKTIPVLFSDKKGKHQNQIIGKSPYMQSVCIDD 411

Query: 443 KNHNIGD-IIKVRITDVKISTLYG 465
                 D I+ V++ + + S+L G
Sbjct: 412 SEDKYRDKIVNVKVLEARQSSLLG 435


>gi|170078520|ref|YP_001735158.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Synechococcus
           sp. PCC 7002]
 gi|229891029|sp|B1XQK7|MIAB_SYNP2 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|169886189|gb|ACA99902.1| tRNA-i(6)A37 thiotransferase enzyme [Synechococcus sp. PCC 7002]
          Length = 451

 Score =  444 bits (1143), Expect = e-122,   Method: Composition-based stats.
 Identities = 180/455 (39%), Positives = 268/455 (58%), Gaps = 23/455 (5%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+++ + ++GCQMN  DS RM  +    GY        ADL++ NTC IR+ A +KVYS+
Sbjct: 4   PRQYHITTFGCQMNKADSERMAGILEEMGYHFTEDPYAADLVLYNTCTIRDNAEQKVYSY 63

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR    K        DL ++VAGCVAQ EGE +LRR P +++++GPQ   RL +LLE+ 
Sbjct: 64  LGRQAKRKQE----KPDLTLIVAGCVAQQEGESLLRRVPELDLIMGPQHANRLQDLLEQV 119

Query: 144 RFGKRVVDTD--YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
             G +VV T+  + VED  +          R   VTA++ +  GC++ CT+CVVP  RG 
Sbjct: 120 EGGSQVVATEPIHIVEDITKP--------RRDSTVTAWVNVIYGCNEHCTYCVVPGVRGT 171

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG------EKCTFSDLLYSLS 255
           E SR    +  E  +L   G  E+TLLGQN++A  G+ L G       K T +DLLY + 
Sbjct: 172 EQSRYPEAIRAEMEELGRQGFKEVTLLGQNIDA-YGRDLPGTTPEGRNKYTLTDLLYYVH 230

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
           ++ G+ R+R+ TSHPR  ++ LIKA  +L  +  + H+P QSG + +LK+M R +T  +Y
Sbjct: 231 DVPGIERIRFATSHPRYFTERLIKACQELPKVCEHFHIPFQSGDNEVLKAMRRGYTHEKY 290

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
           R+II+ IRS  PD +IS+D IV FPGET++ F  T+ LVD+IG+ Q  +  YSPR GTP 
Sbjct: 291 RRIINTIRSYMPDASISADAIVAFPGETEEQFENTLKLVDEIGFDQLNTAAYSPRPGTPA 350

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSPW 434
           +    Q+ E VK +RL  L   + ++    +    G+I EVL+E ++ K   +++GR+  
Sbjct: 351 ATWDNQLSEEVKGDRLQRLNHLVAQKAAERSQRYAGRIEEVLVEDQNPKNPSQVMGRTRG 410

Query: 435 LQSVVLNSK-NHNIGDIIKVRITDVKISTLYGELV 468
            +      + N   G I+ V+IT+ +  +L GE V
Sbjct: 411 NRLTFFEGEINELKGKIVAVKITEARAFSLTGEAV 445


>gi|42520296|ref|NP_966211.1| TRAM domain-containing protein [Wolbachia endosymbiont of
           Drosophila melanogaster]
 gi|225630141|ref|YP_002726932.1| tRNA-i(6)A37 modification enzyme MiaB [Wolbachia sp. wRi]
 gi|81652678|sp|Q73HW8|MIAB_WOLPM RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|42410034|gb|AAS14145.1| TRAM domain protein [Wolbachia endosymbiont of Drosophila
           melanogaster]
 gi|225592122|gb|ACN95141.1| tRNA-i(6)A37 modification enzyme MiaB [Wolbachia sp. wRi]
          Length = 439

 Score =  444 bits (1143), Expect = e-122,   Method: Composition-based stats.
 Identities = 233/444 (52%), Positives = 317/444 (71%), Gaps = 13/444 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +  ++K+YGCQMNVYDS+ ME++    G+  V+    ADL++LNTCHIREKAAEK+YS L
Sbjct: 2   KGLYIKTYGCQMNVYDSVLMENVIKPLGFNVVSDAGKADLVILNTCHIREKAAEKLYSEL 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           G+I +L+         + +VVAGCVAQAEGEE+ RR+P V++VVGPQ+   LPEL+ +A 
Sbjct: 62  GKIHSLRKE-------MTIVVAGCVAQAEGEEVFRRAPFVDIVVGPQSIATLPELIVKAS 114

Query: 145 FGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             K  V++TD+    KF++L   D  Y   +G +AFL IQEGCDKFCTFCVVPYTRG E 
Sbjct: 115 RSKGHVINTDFPEVAKFDKLP--DECYGNSQGSSAFLAIQEGCDKFCTFCVVPYTRGAEY 172

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR ++++  EA KL+ NG  EI LLGQNVNA+ G+  +GE      L+  +++I+ L R+
Sbjct: 173 SRPVNEIFREALKLVANGANEINLLGQNVNAYHGE-CEGEVWDLGKLISHIAKIEKLERI 231

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           RYTTSHPRDM + L  AH +   LMP++HLPVQSGS++IL +MNR+HTA EY +IIDR R
Sbjct: 232 RYTTSHPRDMHESLYLAHAEEPKLMPFVHLPVQSGSNKILHAMNRKHTAEEYLEIIDRFR 291

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
            ++P+I  SSDFIVGFPGET+ DF  TM LV+K+ YAQA+SFKYSPR GTPG+   +QV 
Sbjct: 292 KLKPEIEFSSDFIVGFPGETEKDFEETMKLVEKVRYAQAYSFKYSPRPGTPGAERKDQVP 351

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKGKLVGRSPWLQSVVLNS 442
           E VK ERLL LQK + +QQ+ FN + VG+ I VL  +K GK + +++G+SP++QSV ++ 
Sbjct: 352 EEVKTERLLRLQKLISKQQLEFNQSMVGKTIPVLFSDKKGKHQNQIIGKSPYMQSVCIDD 411

Query: 443 KNHNIGD-IIKVRITDVKISTLYG 465
                 D I+ V++ + + S+L G
Sbjct: 412 SEDKYRDKIVNVKVLEARQSSLLG 435


>gi|314936546|ref|ZP_07843893.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus hominis
           subsp. hominis C80]
 gi|313655165|gb|EFS18910.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus hominis
           subsp. hominis C80]
          Length = 514

 Score =  444 bits (1143), Expect = e-122,   Method: Composition-based stats.
 Identities = 163/448 (36%), Positives = 262/448 (58%), Gaps = 15/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + F +K+YGCQMN +D+  M  +  +  Y+  + +++AD+I++NTC IRE A  KV+S +
Sbjct: 68  RTFLIKTYGCQMNAHDTEVMAGILQALDYQATDDINEADVILINTCAIRENAENKVFSEI 127

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G +++LK    K   + L+ V GC++Q E    +IL+    V+++ G    ++LPE+LE 
Sbjct: 128 GNLKHLK----KNRPETLIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHKLPEILEE 183

Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           A   K +V   +S E D  E L  V     R+    A++ I  GCDKFCT+C+VP+TRG 
Sbjct: 184 AYLSKAMVVEVWSKEGDVIENLPKV-----REGSTKAWVNIMYGCDKFCTYCIVPFTRGK 238

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR    +++E R+L   G  EITLLGQNVN+  GK +        DLL  +S I  + 
Sbjct: 239 ERSRRPQDIIEEVRELAREGYKEITLLGQNVNS-YGKDIKDLDYGLGDLLEDISNID-IP 296

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHP D +D +I+       ++P++HLPVQSG++ +LK M R+++   Y  ++DR
Sbjct: 297 RVRFTTSHPWDFTDRMIEVIAKGGNIVPHIHLPVQSGNNAVLKIMGRKYSRESYLDLVDR 356

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I+   P++A+++D IVG+P ET++ F  T+ L D++ +  A+++ YS R GTP + M + 
Sbjct: 357 IKEAIPNVALTTDIIVGYPNETEEQFEETLSLYDEVQFEHAYTYLYSQRDGTPAAKMKDN 416

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVL 440
           V   VK +RL  L KK+ +          GQ++ VL E    K++  L G +   + V  
Sbjct: 417 VPTEVKKDRLQRLNKKVGQYSEKAMQNYEGQVVTVLCEGTSKKDETVLAGYTEKNKLVNF 476

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 IG ++ V++ + K  +L GE +
Sbjct: 477 KGPREAIGQLVDVKVKEAKQYSLNGEFL 504


>gi|223986392|ref|ZP_03636398.1| hypothetical protein HOLDEFILI_03710 [Holdemania filiformis DSM
           12042]
 gi|223961634|gb|EEF66140.1| hypothetical protein HOLDEFILI_03710 [Holdemania filiformis DSM
           12042]
          Length = 484

 Score =  444 bits (1143), Expect = e-122,   Method: Composition-based stats.
 Identities = 174/450 (38%), Positives = 258/450 (57%), Gaps = 16/450 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           V +R+++ +YGCQ N  DS  +  +  + G+    +  DADLI+LNTC +R+ A +KV  
Sbjct: 39  VGRRYYIHTYGCQANERDSETIAGILEAMGFTAAPAETDADLILLNTCAVRKNAEDKVIG 98

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELL 140
            LG ++ +K    +E  DL+  V GC+AQ E   + IL++   V+++ G    +RLP+LL
Sbjct: 99  QLGALKRMK----RENPDLIFAVCGCMAQEEDIVDLILKKYHQVDLIFGTHNLHRLPQLL 154

Query: 141 ERA-RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
            +A    +R V+      +  E L +      R     A++ I  GCDKFCT+C+VPYTR
Sbjct: 155 TQAMLSHERTVEIFSKEGEVIENLPV-----RRFGKHKAWVNIMYGCDKFCTYCIVPYTR 209

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G E SR    V+ E R+L   G  EITLLGQNVNA+      G    F+ LL   +EI G
Sbjct: 210 GKERSRDPEDVLAEVRELKAQGYKEITLLGQNVNAYGKNRASG--YGFAQLLRDTAEI-G 266

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           + R+R+TTSHP D +D +I      D +MP +HLPVQSGS  +LK M RR+T  EY  + 
Sbjct: 267 VERVRFTTSHPWDFTDEMIDVIASYDNIMPAIHLPVQSGSSEMLKIMGRRYTREEYLTLF 326

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            +I+   P  + ++D IVGFP ET++ F  T+ LVD+  Y  AF+F YSPR GTP + M 
Sbjct: 327 HKIKDRIPGCSFTTDIIVGFPNETEEQFEMTLSLVDECQYDGAFTFIYSPREGTPAARMQ 386

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSV 438
           + V   VK+ RL  L +K+       N+   G+I+ VL++   K+  +   G S   + V
Sbjct: 387 DNVPAEVKSRRLQQLNEKIAFYAHRNNEPYRGRIVTVLVDGPSKKNDQVYSGYSETNKLV 446

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468
              +++   GD+++VRIT++   +L GE V
Sbjct: 447 NFTAEHAEPGDLVQVRITEIHSWSLNGEKV 476


>gi|291301633|ref|YP_003512911.1| RNA modification enzyme, MiaB family [Stackebrandtia nassauensis
           DSM 44728]
 gi|290570853|gb|ADD43818.1| RNA modification enzyme, MiaB family [Stackebrandtia nassauensis
           DSM 44728]
          Length = 495

 Score =  444 bits (1143), Expect = e-122,   Method: Composition-based stats.
 Identities = 164/455 (36%), Positives = 251/455 (55%), Gaps = 16/455 (3%)

Query: 18  VDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA 77
           + +    + + VK+YGCQMNV+DS R+  +    GY       +AD++V NTC +RE A 
Sbjct: 1   MTEVPTARSYAVKTYGCQMNVHDSERIGGLLEDAGYVPAADTGEADVVVFNTCAVRENAD 60

Query: 78  EKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLP 137
            ++Y  LG +R  K +       + + V GC+AQ +  +I++++P V+VV G      LP
Sbjct: 61  NRLYGNLGHLRPQKVA----KPGMQIAVGGCLAQKDRGDIVKKAPWVDVVFGTHNIGSLP 116

Query: 138 ELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197
            LLERAR   R         + F           R+     +++I  GC+  CTFC+VP 
Sbjct: 117 VLLERARHNARAEVEILEALEVFPSTLPT----KRESTYAGWVSISVGCNNTCTFCIVPS 172

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257
            RG E  R   +++ E R L+D GV E+TLLGQNVN++  +   G+K  F  LL +  EI
Sbjct: 173 LRGKEKDRRPGEILAEVRALVDEGVSEVTLLGQNVNSYGVEF--GDKLAFGKLLRACGEI 230

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
            GL R+R+T+ HP+D +D +I A  +   +   LH+P+QSGSD +LK M R +   +Y  
Sbjct: 231 DGLERVRFTSPHPKDFTDDVIDAMAETPNVCHQLHMPLQSGSDTVLKGMRRSYRREKYLG 290

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
           IID++R+  PD AI++D IVGFPGET+ DF  T+D+V K  ++ AF+F+YS R GTP + 
Sbjct: 291 IIDKVRAAMPDAAITTDIIVGFPGETEADFEDTLDVVRKARFSGAFTFQYSIRPGTPAAT 350

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEK---GKLVGRSP 433
           M  QV ++V  ER   L     E     N   +G+ +EVL+    G++    G++ GR+ 
Sbjct: 351 MDGQVPKHVVQERYERLIAVQEEISWDENKKQIGREVEVLVAVGEGRKDAATGRMSGRAR 410

Query: 434 WLQSVVLNSK--NHNIGDIIKVRITDVKISTLYGE 466
             + V  ++   +   GD++   IT      L  +
Sbjct: 411 DGRLVHFDATGFDVRPGDVVTTTITAAAPHHLIAD 445


>gi|332299874|ref|YP_004441795.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Porphyromonas asaccharolytica DSM 20707]
 gi|332176937|gb|AEE12627.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Porphyromonas asaccharolytica DSM 20707]
          Length = 450

 Score =  444 bits (1143), Expect = e-122,   Method: Composition-based stats.
 Identities = 156/446 (34%), Positives = 251/446 (56%), Gaps = 9/446 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +R F+++YGCQMNV DS  +       GY+  + +D+AD +++NTC +R+ A ++    +
Sbjct: 10  KRVFIETYGCQMNVADSEIIAAQMQLAGYQLTDQIDEADAVLINTCSVRDNAEQR---II 66

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R+ NL   R + G   +V V GC+A+   E +++    V++V GP  Y  LP L+  A 
Sbjct: 67  HRLDNLNGQRRRSGHPQIVGVLGCMAERVRETLIQDH-GVDLVAGPDAYTDLPHLIAAAE 125

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G+  +  + S  + +  +  V        G   F++I  GCD FCT+C+VPYTRG E S
Sbjct: 126 AGEPAISIELSKSETYSDVIPVRLPGLHISG---FVSIMRGCDNFCTYCIVPYTRGRERS 182

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R    +V E +++   G  E+TLLGQNVN++  +   G   TF+DLL  ++E    +R+R
Sbjct: 183 RDPESIVREVQRMAQEGYREVTLLGQNVNSYCWQSETGVSYTFADLLRKVAEAVPTMRIR 242

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +T+ HP+DM D  ++       +  ++H P+QSGS+RIL+ M+RR+T   Y + ++RIR 
Sbjct: 243 FTSPHPKDMKDETLEVMSLYPNICRHIHFPLQSGSNRILERMHRRYTREWYLERVERIRD 302

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN-MLEQVD 383
             PD  +S+D   GF GET++DF+ T++++ +     AF FKYS R GT  S  +++ V 
Sbjct: 303 YMPDCGLSTDVFCGFSGETEEDFQETLEVMRQARLDSAFMFKYSERPGTYASRHLVDDVP 362

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNS 442
           E VK ERL  +     E  +  N+  V +  EVLIE + K       GR+   + +V   
Sbjct: 363 EEVKVERLNRMIALQNELSLESNERDVDKSFEVLIEGYSKRSHDDFFGRTQQNKVIVFPK 422

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
            ++ IG ++ VR+  V  +T+ G  V
Sbjct: 423 GHNQIGKLVTVRVERVTSATMIGSEV 448


>gi|294782966|ref|ZP_06748292.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Fusobacterium sp.
           1_1_41FAA]
 gi|294481607|gb|EFG29382.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Fusobacterium sp.
           1_1_41FAA]
          Length = 435

 Score =  444 bits (1143), Expect = e-122,   Method: Composition-based stats.
 Identities = 158/445 (35%), Positives = 260/445 (58%), Gaps = 12/445 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++  + +YGCQMNV +S +++ +F + GY+     DDAD + LNTC +RE AA +++  L
Sbjct: 2   KKASIITYGCQMNVNESAKIKKIFQNLGYDVTEETDDADAVFLNTCTVREGAATQIFGKL 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           G +++LK          ++ V GC AQ +GEE++++ PI+++V+G Q   R+P+ +E+  
Sbjct: 62  GELKSLKEK-----KGTIIGVTGCFAQEQGEELVKKFPIIDIVMGNQNIGRIPQAIEKIE 116

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
             +   +     ED+                 TA ++I  GC+ FCTFC+VPY RG E S
Sbjct: 117 NNESSHEVYTDNEDEL----PPRLDAEFASDQTASISITYGCNNFCTFCIVPYVRGRERS 172

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
             L ++V +  + ++ G  EI LLGQNVN++     +G+   F+ LL  + +++G   +R
Sbjct: 173 VPLEEIVKDVEQYVNKGAKEIVLLGQNVNSYGKDFKNGD--NFAKLLEEICKVEGDYIVR 230

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           + + HPRD +D +I      D +   LHLP+QSGS +IL+ M R +T  +Y  ++D+I+S
Sbjct: 231 FVSPHPRDFTDDVIDVIAKNDKISKCLHLPLQSGSSQILRKMGRGYTKEKYLALVDKIKS 290

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             PD+A+++D IVGFPGET++DF  T+D+V+K+ +  ++ F YS R GT  + M  Q+DE
Sbjct: 291 KIPDVALTADIIVGFPGETEEDFLDTVDVVEKVSFDNSYMFMYSIRKGTKAATMDNQIDE 350

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVLNSK 443
           NVK ERL  L K   E   + +     +++ VL+E   K+  + L GR+   + V+    
Sbjct: 351 NVKKERLQRLMKVQNECSFNESSKYKDKVVRVLVEGPSKKNKEVLSGRTSTNKIVLFKGD 410

Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468
               G  + V+I + K  TLYG++V
Sbjct: 411 TALKGQFVDVKINECKTWTLYGDIV 435


>gi|296269109|ref|YP_003651741.1| RNA modification enzyme, MiaB family [Thermobispora bispora DSM
           43833]
 gi|296091896|gb|ADG87848.1| RNA modification enzyme, MiaB family [Thermobispora bispora DSM
           43833]
          Length = 498

 Score =  444 bits (1143), Expect = e-122,   Method: Composition-based stats.
 Identities = 173/461 (37%), Positives = 259/461 (56%), Gaps = 14/461 (3%)

Query: 13  MVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHI 72
           M +        P+ + V++YGCQMNV+DS R+  +  S GY R    + AD+IV NTC +
Sbjct: 1   MTATTTGTEGAPRTYEVRTYGCQMNVHDSERIAGLLESAGYVRAPEGEIADVIVFNTCAV 60

Query: 73  REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT 132
           RE A  ++Y  LG +R +K +R      + + V GC+AQ +  EI+RR+P V+VV G   
Sbjct: 61  RENADNRLYGNLGHLRPIKMARK----GMQIAVGGCLAQKDRSEIIRRAPWVDVVFGTHN 116

Query: 133 YYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTF 192
              LP LLERAR  +          + F           R+    A++ I  GC+  CTF
Sbjct: 117 IGSLPALLERARVAQEAQVEIKEALETFPSTLPT----KRESVYAAWVAISVGCNNTCTF 172

Query: 193 CVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLY 252
           C+VP  RG E  R    ++ E R L+  GV E+TLLGQNVN +  +   G++  FS LL 
Sbjct: 173 CIVPSLRGKERDRRPGDILSEIRALVAEGVIEVTLLGQNVNTYGVEF--GDRQAFSKLLR 230

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
           +  EI+GL R+R+T+ HP   +D +I A  +   +MP LH+P+QSGSDRIL++M R + A
Sbjct: 231 ACGEIEGLERVRFTSPHPAAFTDDVIAAMAETPNVMPSLHMPLQSGSDRILRAMRRSYRA 290

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
             +  I++R+R+  PD AIS+D IVGFPGET++DF+ T ++V +  +A AF+F+YS R G
Sbjct: 291 ERFLGILERVRAAIPDAAISTDIIVGFPGETEEDFQRTCEVVREARFAHAFTFQYSIRPG 350

Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKG---KL 428
           TP + M  QV + V  +R   L     +     N A VG+ +EVLI E  G++     ++
Sbjct: 351 TPAAAMENQVPKEVVQDRYDRLIALQEQISWEENKAQVGRTVEVLIAEGEGRKDDRTQRI 410

Query: 429 VGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
            GR+   + V +   +   GD++   +T      L  + V+
Sbjct: 411 SGRAADYRLVHVAPVDARPGDMVTAEVTYAAPHHLVADKVL 451


>gi|271963754|ref|YP_003337950.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Streptosporangium roseum
           DSM 43021]
 gi|270506929|gb|ACZ85207.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Streptosporangium roseum
           DSM 43021]
          Length = 502

 Score =  444 bits (1143), Expect = e-122,   Method: Composition-based stats.
 Identities = 175/461 (37%), Positives = 258/461 (55%), Gaps = 18/461 (3%)

Query: 13  MVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHI 72
           M  ++       + + V++YGCQMNV+DS R+  +    GY  V   + AD++V NTC +
Sbjct: 1   MSVEMTVTVESARTYEVRTYGCQMNVHDSERLSGLLEDAGYVPVPEGEAADVVVFNTCAV 60

Query: 73  REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT 132
           RE A  K+Y  LG +R  K S       + + V GC+AQ +  EI+R++P V+VV G   
Sbjct: 61  RENADNKLYGNLGHLRPSKVS----NPGMQIAVGGCLAQKDQGEIVRKAPWVDVVFGTHN 116

Query: 133 YYRLPELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCT 191
              LP LLERAR  +   V+   S+E     L        R+    A++++  GC+  CT
Sbjct: 117 IGSLPVLLERARVRQEAQVEIKESLETFPSTLPT-----KRESAYAAWVSVSVGCNNTCT 171

Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLL 251
           FC+VP  RG E  R    +++E R L+D GV EITLLGQNVN +  +   G++  F  LL
Sbjct: 172 FCIVPALRGKEKDRRPGDILNEVRTLVDQGVLEITLLGQNVNTYGVEF--GDRLAFGKLL 229

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
            +  +I GL R+R+T+ HP   +D +I A  +   +M  LH+P+QSGSDRILK+M R + 
Sbjct: 230 RACGDIDGLERVRFTSPHPAAFTDDVIAAMAETPNVMHQLHMPLQSGSDRILKAMRRSYR 289

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
           A  Y  II+R+R+  PD AIS+D IVGFPGET++DF+ T+D+V +  +A AF+F+YS R 
Sbjct: 290 AERYLGIIERVRAAMPDAAISTDIIVGFPGETEEDFQGTLDVVRESRFANAFTFQYSIRP 349

Query: 372 GTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKG---K 427
           GTP + M +Q+ + V  ER   L     E     N   VG+ +EVL+ E  G++     +
Sbjct: 350 GTPAATMDDQIPKEVVQERYERLVALQTEISWEENKKQVGRTLEVLVAEGEGRKDEATRR 409

Query: 428 LVGRSPWLQSVVLNSKNH--NIGDIIKVRITDVKISTLYGE 466
           L GR+   + V           GD++ V +T      L  +
Sbjct: 410 LSGRASDNRLVHFAPGEETPRPGDMVAVEVTYAAPHHLVAD 450


>gi|148265155|ref|YP_001231861.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Geobacter
           uraniireducens Rf4]
 gi|229890547|sp|A5G670|MIAB_GEOUR RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|146398655|gb|ABQ27288.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Geobacter uraniireducens
           Rf4]
          Length = 440

 Score =  444 bits (1143), Expect = e-122,   Method: Composition-based stats.
 Identities = 172/443 (38%), Positives = 259/443 (58%), Gaps = 9/443 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +  +++++GCQMNV DS ++  +    GY        ADL++LNTC +R KA EKVY+ L
Sbjct: 5   KLLYLETFGCQMNVSDSEKIAALLKGIGYFPTQDSSQADLVILNTCSVRAKAEEKVYNHL 64

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            + + LK         +++ V GCVAQ EGE +L   P +++V G    + LPEL+  A 
Sbjct: 65  VQYKGLKRK----KPGIILGVGGCVAQQEGERLLANVPHLDIVFGTHNLHLLPELVRAAE 120

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G+R+ +  +   +    L  VD    R  GV+ F+T+ +GC+ FC++C+VPY RG EIS
Sbjct: 121 KGERLAEVGFIDNETRLDLFPVDE---RTDGVSRFVTVMQGCENFCSYCIVPYVRGREIS 177

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R  + ++ E R +  NGV E+TLLGQNVN+  G    GE  +F  LL  +S I G+ R+R
Sbjct: 178 RRSADILGEVRGMAGNGVKEVTLLGQNVNS-YGLKSSGE-MSFIALLREVSLIPGIERIR 235

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +TTSHP+D S  LI    ++  L  ++HLP QSGS+ +L +MNR +T  EY   I R+++
Sbjct: 236 FTTSHPKDFSQPLIDCFAEIPKLCRHIHLPAQSGSNAVLAAMNRGYTREEYLGSIARLKA 295

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             P I I+ D IVGFPGET++DF+AT+ L++++ Y   FSF YS R  T  +   ++V +
Sbjct: 296 ACPSIQITGDIIVGFPGETEEDFQATLSLMEEVRYTDVFSFIYSKRPETKAAGYADEVGQ 355

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
           + K  RL  L    R   +  N + VG + +VLIE   +  G+  GR+   + V L +  
Sbjct: 356 DEKQGRLSRLLDLQRRITLETNKSFVGTVQQVLIEGESRRGGQFYGRTSGNRVVNLAADV 415

Query: 445 HNIGDIIKVRITDVKISTLYGEL 467
             +G I+ V IT    ++L GEL
Sbjct: 416 SLVGSIVNVMITRGDQNSLQGEL 438


>gi|228471151|ref|ZP_04055970.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Porphyromonas uenonis
           60-3]
 gi|228307091|gb|EEK16165.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Porphyromonas uenonis
           60-3]
          Length = 452

 Score =  444 bits (1143), Expect = e-122,   Method: Composition-based stats.
 Identities = 155/446 (34%), Positives = 248/446 (55%), Gaps = 9/446 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +R ++++YGCQMNV DS  +       GY+  + +D+AD +++NTC +R+ A       +
Sbjct: 10  KRVYIETYGCQMNVADSEIIAAQMQLAGYQLTDQIDEADAVLINTCSVRDNAE---LRIV 66

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R+ NL   R + G   +V V GC+A+   E +++    V++V GP  Y  LP L+  A 
Sbjct: 67  RRLDNLNGQRRRSGHPQIVGVLGCMAERVQETLIQNH-GVDLVAGPDAYTDLPHLIAAAE 125

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G+  +  + S  + +  +  +        G   F++I  GCD FCT+C+VPYTRG E S
Sbjct: 126 AGEPAISIELSKSETYSDVIPIRLPGLHISG---FVSIMRGCDNFCTYCIVPYTRGRERS 182

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R    ++ E +++   G  E+TLLGQNVN++      G   TF+DLL S++E    +R+R
Sbjct: 183 RDPESIIREVQRMAQEGYREVTLLGQNVNSYCWHTETGASYTFADLLRSVAEAVPTMRIR 242

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +T+ HP+DM D  ++       +  ++H P+QSGS+RIL+ M RR+T   Y + ++RIR 
Sbjct: 243 FTSPHPKDMKDETLEVMSRYHNICSHIHFPLQSGSNRILERMRRRYTREWYLERVERIRD 302

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG-SNMLEQVD 383
             PD  +S+D   GF GET++DF+ T++++       AF FKYS R GT    ++++ V 
Sbjct: 303 YMPDCGLSTDVFCGFSGETEEDFQETLEVMRLARLDSAFMFKYSERPGTYASHHLVDDVP 362

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNS 442
           E VK ERL  +     E  +  N+  VG+  EVLIE + K       GR+   + +V   
Sbjct: 363 EEVKVERLNRMIALQNELSLESNERDVGKSFEVLIEGYSKRSHDDFFGRTQQNKVIVFPK 422

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
            N+ IG ++ VR+  V  +T+ G  V
Sbjct: 423 GNNQIGKLVTVRVERVTSATMIGSEV 448


>gi|218248044|ref|YP_002373415.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Cyanothece sp.
           PCC 8801]
 gi|229890509|sp|B7JZ48|MIAB_CYAP8 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|218168522|gb|ACK67259.1| RNA modification enzyme, MiaB family [Cyanothece sp. PCC 8801]
          Length = 451

 Score =  444 bits (1143), Expect = e-122,   Method: Composition-based stats.
 Identities = 180/464 (38%), Positives = 280/464 (60%), Gaps = 30/464 (6%)

Query: 22  IVPQR-------FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIRE 74
           + P++       + + ++GCQMN  DS RM  +  + G+      + ADLI+ NTC IR+
Sbjct: 1   MTPKKMTHYQRHYHITTFGCQMNKADSERMAGILENMGFIWSEDPNQADLILYNTCTIRD 60

Query: 75  KAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYY 134
            A +KVYS+LGR    K+       DL ++VAGCVAQ EGE+ILRR P +++V+GPQ   
Sbjct: 61  NAEQKVYSYLGRQAKRKHE----NPDLTLIVAGCVAQQEGEQILRRVPELDLVMGPQHAN 116

Query: 135 RLPELLERARFGKRVVDTD--YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTF 192
           RL +LL++   G +VV T+  + +ED  +          R   +TA++ +  GC++ C++
Sbjct: 117 RLEDLLQQVFDGNQVVATEPIHIIEDITKP--------RRDSTITAWVNVIYGCNERCSY 168

Query: 193 CVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG------EKCT 246
           CVVP  RG+E SR+   ++ E   L   G  E+TLLGQN++A  G+ L G       + T
Sbjct: 169 CVVPNVRGVEQSRTPEAILAEMELLGKQGYKEVTLLGQNIDA-YGRDLPGVTESGRHQHT 227

Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306
            +DLLY++ ++ G+ R+R+ TSHPR  ++ LI A  +L  +  + H+P QSG + ILK+M
Sbjct: 228 LTDLLYTVHDVVGIERIRFATSHPRYFTERLIAACQELSKVCEHFHIPFQSGDNDILKAM 287

Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
            R +T  +YRQIID+IR   PD +IS+D IVGFPGET++ F  T+ LV+ IG+ Q  +  
Sbjct: 288 KRGYTHEKYRQIIDKIRDYMPDASISADAIVGFPGETEEQFENTLKLVEDIGFDQLNTAA 347

Query: 367 YSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEK 425
           YSPR GTP +    Q+ E VK++RL  L   + ++    +   +G+I EVL+E ++ K+ 
Sbjct: 348 YSPRPGTPAALWDNQLSEEVKSDRLQRLNHLVAQKAAERSQRYLGRIEEVLVEDQNPKDS 407

Query: 426 GKLVGRSPWLQSVVLNSK-NHNIGDIIKVRITDVKISTLYGELV 468
            +++GR+   +        N   G +IKV+IT+V+  +L GE+V
Sbjct: 408 TQVMGRTRGNRLTFFKGDINQLKGRLIKVKITEVRAFSLTGEIV 451


>gi|148284092|ref|YP_001248182.1| MiaB-like tRNA modifying enzyme [Orientia tsutsugamushi str.
           Boryong]
 gi|229890582|sp|A5CC78|MIAB_ORITB RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|146739531|emb|CAM79253.1| MiaB-like tRNA modifying enzyme [Orientia tsutsugamushi str.
           Boryong]
          Length = 449

 Score =  444 bits (1143), Expect = e-122,   Method: Composition-based stats.
 Identities = 219/450 (48%), Positives = 307/450 (68%), Gaps = 10/450 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + +  ++K+YGCQMNVYDS RM D+  +QGY  V +M DA +I+LNTCHIREKA+EK+YS
Sbjct: 1   MNKMLYIKTYGCQMNVYDSNRMVDLLETQGYNIVANMADASVIILNTCHIREKASEKMYS 60

Query: 83  FLGRIRNLKNSRIKEGG-DLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
            LGRI+ L+ SR+K G     ++VAGCV QAEGEEI  R P VN++VGPQ+YY LP +LE
Sbjct: 61  ELGRIKKLQQSRLKAGKSKAKIIVAGCVGQAEGEEIFIREPAVNIIVGPQSYYNLPTMLE 120

Query: 142 RARFG--KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           +   G    ++D D+    KF +L  V     +   V+  +++QEGCDKFCTFCVVPYTR
Sbjct: 121 KLDSGTENHLIDLDFVEAAKFNKLPEV----LKSPTVSGLVSVQEGCDKFCTFCVVPYTR 176

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G E SR L QV  E   +   G  E+ L+GQNV+A+ GK  +G++C+ +DL+  +++I  
Sbjct: 177 GAEFSRPLEQVYREVLNIAQQGAKEVVLVGQNVSAYHGKDENGKECSLADLIKYVAKIDK 236

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           + R+RY TSHP DM+D L+  H   + LMP+LHLPVQSGS++ILK MNRRHT   Y +II
Sbjct: 237 IKRIRYITSHPNDMTDQLLSLHATEEKLMPFLHLPVQSGSNKILKLMNRRHTRERYLEII 296

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            ++R +RPDI ISSD IVGFPGE D+DF AT+ L  +  + Q +SFKYS R GTP + + 
Sbjct: 297 QQLRELRPDIVISSDIIVGFPGEDDEDFEATLSLAKEAKFGQCYSFKYSQRPGTPAA-VK 355

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV 439
           +Q+ E VK  RL  LQ +L  QQ+  N   +G+++ VL ++ GK  G+++G++P++QSV 
Sbjct: 356 QQISEEVKQHRLSILQAQLMLQQLECNQKLIGKVVPVLFDRDGKYDGQIIGKTPYMQSVC 415

Query: 440 L--NSKNHNIGDIIKVRITDVKISTLYGEL 467
           +     N+  G I+ V+I     S+L+GE+
Sbjct: 416 IMNEKDNNLYGKIVNVKILSASASSLFGEV 445


>gi|261400545|ref|ZP_05986670.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Neisseria lactamica ATCC
           23970]
 gi|269209614|gb|EEZ76069.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Neisseria lactamica ATCC
           23970]
          Length = 430

 Score =  444 bits (1142), Expect = e-122,   Method: Composition-based stats.
 Identities = 193/437 (44%), Positives = 271/437 (62%), Gaps = 13/437 (2%)

Query: 36  MNVYDSLRMEDMFFSQ--GYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNS 93
           MN YDS +M  +   +  G E+V   DDAD+I+ NTC +REKA EKV+S LGR+R LK  
Sbjct: 1   MNEYDSDKMLAVLAEEHGGIEQVTQPDDADIILFNTCSVREKAQEKVFSDLGRVRPLKEK 60

Query: 94  RIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-ERARFGKRVVDT 152
                  L++ VAGCVA  EGE I++R+P V+VV GPQT +RLP+++ ++   G   VD 
Sbjct: 61  ----NPGLIIGVAGCVASQEGENIIKRAPYVDVVFGPQTLHRLPKMIVDKETSGLSQVDI 116

Query: 153 DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVD 212
            +   +KF+ L        R  G  AF++I EGC K+C+FCVVPYTRG E SR L+ V+ 
Sbjct: 117 SFPEIEKFDHLPPA-----RVEGGAAFVSIMEGCSKYCSFCVVPYTRGEEFSRPLNDVLT 171

Query: 213 EARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
           E   L+  GV EI LLGQNVNA+RG+  +GE C F+ LL  + EI G+ RLR+TTSHPR+
Sbjct: 172 EIAGLVQQGVKEINLLGQNVNAYRGEMENGEICDFATLLRIVHEIPGIERLRFTTSHPRE 231

Query: 273 MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAIS 332
            +D +I+ + DL  L+ +LHLP+QSGSDR+L +M R +TA EY+ II ++R++RPD+ +S
Sbjct: 232 FTDSIIECYRDLPKLVSHLHLPIQSGSDRVLSAMKRGYTALEYKSIIRKLRAIRPDLCLS 291

Query: 333 SDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLL 392
           SDFIVGFPGET+ +F  T+ LV  I +  +F F YSPR GTP +N+ +      K  RL 
Sbjct: 292 SDFIVGFPGETEREFEQTLKLVKDIAFDLSFVFIYSPRPGTPAANLPDDTPHEEKVRRLE 351

Query: 393 CLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLNSKNHNIGDII 451
            L + +  +    N   VG +   L+E    K+  +L  R+   + V        I  +I
Sbjct: 352 ALNEVIEAETARINQTMVGTVQRCLVEGISKKDPDQLQARTANNRVVNFTGTPDMINQMI 411

Query: 452 KVRITDVKISTLYGELV 468
            + IT+    +L G+ V
Sbjct: 412 DLEITEAYTFSLRGKTV 428


>gi|117924735|ref|YP_865352.1| RNA modification protein [Magnetococcus sp. MC-1]
 gi|229890560|sp|A0L7K3|MIAB_MAGSM RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|117608491|gb|ABK43946.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Magnetococcus sp. MC-1]
          Length = 437

 Score =  444 bits (1142), Expect = e-122,   Method: Composition-based stats.
 Identities = 206/447 (46%), Positives = 293/447 (65%), Gaps = 14/447 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           +  ++K++GCQMN YDS RM D+   S  ++  +  + ADLI+LNTCHIREKA +K++S 
Sbjct: 2   KHLYIKTFGCQMNSYDSTRMADLLGESHAFQSTDDPEKADLIILNTCHIREKAEDKLFSE 61

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR+R L          +++ V GCV QAEG  I  R+P V +V GPQ Y++LP++++RA
Sbjct: 62  LGRLRPLAE------RGVILAVGGCVGQAEGRTIFSRAPYVRMVFGPQNYHKLPQMIQRA 115

Query: 144 RFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
             G+ RV+  D    DKF+ L  V     R +GV   +T+QEGCDKFC FCVVPYTRG E
Sbjct: 116 LDGETRVIAEDIPSVDKFDNLPQV-----RAQGVVGQVTVQEGCDKFCAFCVVPYTRGRE 170

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR ++ ++ E   L   GV E+ LLGQNVNA+ G   +G     + L+  ++ I+G+ R
Sbjct: 171 WSRPVAAILAETEALAQQGVREVLLLGQNVNAYAGVDEEGVSYDLALLIRRVALIEGIER 230

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+ TSHP DM++ L++  G+++ L PYLHLP+QSGSD IL +M R HT  EY   ++++
Sbjct: 231 IRFVTSHPVDMNEDLVEVFGEIEQLAPYLHLPIQSGSDAILAAMQRGHTVEEYCTWVEKV 290

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+V PD+A++SDFIVGFPGET+ DF+AT+DL+ ++G+  A+SFKYS R GTP ++M EQV
Sbjct: 291 RAVCPDVALASDFIVGFPGETEQDFQATLDLISRLGFDHAYSFKYSSRPGTPAADMPEQV 350

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRSPWLQSVVLN 441
           DE  K+ RL  LQ+ L  QQ+  N A VG+   VL+E   K+  G+L GRS  L++V   
Sbjct: 351 DEAEKSRRLERLQQLLNTQQLQRNKARVGRRESVLVEGVSKKRDGELSGRSGTLRTVNFA 410

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                IG  + V I +   ++L G LV
Sbjct: 411 GPVALIGQFVDVEIVEGLPNSLRGRLV 437


>gi|289550913|ref|YP_003471817.1| tRNA-i(6)A37 methylthiotransferase [Staphylococcus lugdunensis
           HKU09-01]
 gi|315658416|ref|ZP_07911288.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus
           lugdunensis M23590]
 gi|289180445|gb|ADC87690.1| tRNA-i(6)A37 methylthiotransferase [Staphylococcus lugdunensis
           HKU09-01]
 gi|315496745|gb|EFU85068.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus
           lugdunensis M23590]
          Length = 514

 Score =  444 bits (1142), Expect = e-122,   Method: Composition-based stats.
 Identities = 163/448 (36%), Positives = 262/448 (58%), Gaps = 15/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + F +K+YGCQMN +D+  M  +  + GY+  + + +AD+I++NTC IRE A  KV+S +
Sbjct: 68  RTFLIKTYGCQMNAHDTEVMAGILEALGYQSTSDIQEADVILINTCAIRENAENKVFSEI 127

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G +++LK    K   D L+ V GC++Q E    +IL+    V+++ G    ++LPE+LE 
Sbjct: 128 GNLKHLK----KNRPDCLIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHKLPEILEE 183

Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           A   K +V   +S E D  E L  V     R+  + A++ I  GCDKFCT+C+VP+TRG 
Sbjct: 184 AYMSKAMVVDVWSKEGDIIENLPKV-----REGNIKAWVNIMYGCDKFCTYCIVPFTRGK 238

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR    ++ E ++L   G  EITLLGQNVN+  GK ++       DLL ++S+I  + 
Sbjct: 239 ERSRRPEDIIAEVKELAREGYQEITLLGQNVNS-YGKDIEDIDYELGDLLEAISKID-IP 296

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHP D +D +I+       ++P++HLPVQSG++ +LK M R++T   Y +++ +
Sbjct: 297 RVRFTTSHPWDFTDRMIQVIAQGGNIVPHIHLPVQSGNNAVLKIMGRKYTRESYLELVSK 356

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I++  P+IA+++D IVG+P ET+D F  T+ L D++ +  A+++ YS R GTP + M + 
Sbjct: 357 IKAAIPNIALTTDIIVGYPNETEDQFEETLTLYDEVAFEHAYTYLYSQRDGTPAAKMKDN 416

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440
           V   VK +RL  L +K+ +             + VL E   K+    L G +   + V  
Sbjct: 417 VPLEVKKQRLQRLNQKVGQYSQQAMSHYENTTVTVLCEGTSKKDDTVLAGYTGKNKLVNF 476

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 IG +++V+I + K  +L G  V
Sbjct: 477 KGPKEAIGQLVEVKIDEAKQYSLNGTFV 504


>gi|239928542|ref|ZP_04685495.1| hypothetical protein SghaA1_09973 [Streptomyces ghanaensis ATCC
           14672]
          Length = 496

 Score =  444 bits (1142), Expect = e-122,   Method: Composition-based stats.
 Identities = 174/451 (38%), Positives = 252/451 (55%), Gaps = 20/451 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDD--ADLIVLNTCHIREKAAEKVYS 82
           + + V++YGCQMNV+DS R+  +    GY R     D  AD++V NTC +RE A  K+Y 
Sbjct: 5   RTYEVRTYGCQMNVHDSERLAGLLEDAGYVRAPEGSDGDADVVVFNTCAVRENADNKLYG 64

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            LG +   K  R      + + V GC+AQ + + I++R+P V+VV G     +LP LLER
Sbjct: 65  NLGHLAPKKARR----PGMQIAVGGCLAQKDRDTIVKRAPWVDVVFGTHNIGKLPVLLER 120

Query: 143 ARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           AR  +   V+   S+E     L        R+    A+++I  GC+  CTFC+VP  RG 
Sbjct: 121 ARVQEEAQVEIAESLEAFPSTLPT-----RRESAYAAWVSISVGCNNTCTFCIVPALRGK 175

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E  R    ++ E   L+  GV EITLLGQNVNA  G  + G++  FS LL +   I GL 
Sbjct: 176 EKDRRPGDILAEIEALVAEGVSEITLLGQNVNA-YGSDI-GDREAFSKLLRACGRIDGLE 233

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+T+ HPRD +D +I A  +   +MP LH+P+QSGSD +LK+M R +    Y  II++
Sbjct: 234 RVRFTSPHPRDFTDDVIAAMAETPNVMPQLHMPLQSGSDAVLKAMRRSYRQERYLGIIEK 293

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R+  P  AIS+D IVGFPGET++DF  T+ +V +  +AQAF+F+YS R GTP + M  Q
Sbjct: 294 VRAAIPHAAISTDIIVGFPGETEEDFEQTLHVVREARFAQAFTFQYSKRPGTPAAEMDGQ 353

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKG---KLVGRSPWLQS 437
           + + V  ER   L     E     N   VG+ +E+++ E  G++     +L GR+P  + 
Sbjct: 354 IPKKVVQERYERLVALQEEISWEENKKQVGRTLELMVAEGEGRKDDTTHRLSGRAPDNRL 413

Query: 438 VVLNSK--NHNIGDIIKVRITDVKISTLYGE 466
           V           GD++ V IT      L  E
Sbjct: 414 VHFTKPEQEVRPGDVVTVEITYAAPHHLLAE 444


>gi|169630131|ref|YP_001703780.1| putative tRNA-i(6)A37 modification enzyme MiaB [Mycobacterium
           abscessus ATCC 19977]
 gi|229890563|sp|B1MD05|MIAB_MYCA9 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|169242098|emb|CAM63126.1| Putative tRNA-i(6)A37 modification enzyme MiaB [Mycobacterium
           abscessus]
          Length = 507

 Score =  444 bits (1142), Expect = e-122,   Method: Composition-based stats.
 Identities = 167/468 (35%), Positives = 257/468 (54%), Gaps = 23/468 (4%)

Query: 13  MVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHI 72
           M S         + + V++YGCQMNV+DS R+  +  + GY +     DAD+++ NTC +
Sbjct: 1   MTSTATSGESAVRTYQVRTYGCQMNVHDSERVSGLLDAAGYVKAPEGTDADIVIFNTCAV 60

Query: 73  REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT 132
           RE A  K+Y  +  +   K +      ++ + V GC+AQ + E +L ++P V+VV G   
Sbjct: 61  RENADNKLYGNISHLAPRKAA----NPNMQIAVGGCLAQKDREGMLAKAPWVDVVFGTHN 116

Query: 133 YYRLPELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCT 191
              LP LLERAR      V+   ++E     L        R+    A+++I  GC+  CT
Sbjct: 117 IGSLPALLERARHNNEAQVEIVEALEHFPSALPAT-----RESAYAAWVSISVGCNNTCT 171

Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT----F 247
           FC+VP  RG EI R    ++ E + L+D GV E+TLLGQNVNA+     D E       F
Sbjct: 172 FCIVPSLRGKEIDRRPGDILGEVQALVDQGVLEVTLLGQNVNAYGVNFADPEIPRDRGAF 231

Query: 248 SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307
           ++LL +   I GL R+R+T+ HP + +D +I+A      + P LH+P+QSGSDRILK+M 
Sbjct: 232 AELLRACGRIDGLERVRFTSPHPAEFTDDVIEAMAQTPNVCPQLHMPLQSGSDRILKAMR 291

Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           R + +  +  IID++RS  PD AI++D IVGFPGET++DF+ T+++V +  ++ AF+F+Y
Sbjct: 292 RSYRSERFLSIIDKVRSAMPDAAITTDIIVGFPGETEEDFQQTLEVVRRARFSSAFTFQY 351

Query: 368 SPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKG 426
           S R GTP + + +Q+ + V  ER   L        +  N   +G++IEVLI    G++ G
Sbjct: 352 SIRPGTPAAKLPDQLPKAVVQERYDRLIALQESVTLEENQKQIGRMIEVLIATGEGRKDG 411

Query: 427 ---KLVGRSPWLQSVVL-----NSKNHNIGDIIKVRITDVKISTLYGE 466
              ++ GR+   + V              GDII V +T      L  +
Sbjct: 412 ETARMSGRARDGRLVHFRPQGHVDGALRPGDIITVDVTGAAPHHLIAD 459


>gi|118465431|ref|YP_882802.1| hypothetical protein MAV_3625 [Mycobacterium avium 104]
 gi|118166718|gb|ABK67615.1| conserved hypothetical protein [Mycobacterium avium 104]
          Length = 688

 Score =  444 bits (1142), Expect = e-122,   Method: Composition-based stats.
 Identities = 168/453 (37%), Positives = 257/453 (56%), Gaps = 20/453 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNS-MDDADLIVLNTCHIREKAAEKVYSF 83
           + + V++YGCQMNV+DS R+  +  + GY R     + AD++V NTC +RE A  K+Y  
Sbjct: 2   RTYQVRTYGCQMNVHDSERLAGLLEAAGYRRAAEGAEVADVVVFNTCAVRENADNKLYGN 61

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           L  +   K    +    + + V GC+AQ + E +LRR+P V+VV G      LP LLERA
Sbjct: 62  LSHLAPRK----RSNPQMQIAVGGCLAQKDREAVLRRAPWVDVVFGTHNIGSLPTLLERA 117

Query: 144 RFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           R  K   V+   +++     L        R+    A+++I  GC+  CTFC+VP  RG E
Sbjct: 118 RHNKAAQVEIAEALQQFPSSLPSA-----RESAYAAWVSISVGCNNSCTFCIVPSLRGKE 172

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG----EKCTFSDLLYSLSEIK 258
           + RS   ++ E R L+ +GV E+TLLGQNVNA+     D     ++  F+ LL +  EI 
Sbjct: 173 VDRSPDDILAEVRSLVADGVLEVTLLGQNVNAYGVSFADPALPRDRGAFARLLRACGEID 232

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           GL R+R+T+ HP + +D +I+A      + P LH+P+QSGSDR+L++M R + A  Y  I
Sbjct: 233 GLERVRFTSPHPAEFTDDVIEAMAQTPNVCPALHMPLQSGSDRVLRAMRRSYRAERYLGI 292

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           IDR+R+  P  AI++D IVGFPGET++DF AT+D+V +  +A AF+F+YS R GTP + +
Sbjct: 293 IDRVRAAMPHAAITTDLIVGFPGETEEDFAATLDVVRRARFAAAFTFQYSKRPGTPAAEL 352

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKG---KLVGRSPW 434
             Q+ + V  ER   L +      +  N A VGQ +E+L+    G++     ++ GR+  
Sbjct: 353 DGQIPKAVVQERYERLVELQESISLQGNQALVGQTVELLVATGEGRKDSATARMSGRARD 412

Query: 435 LQSVVLNSKN-HNIGDIIKVRITDVKISTLYGE 466
            + V   + +    GD++   IT      L  +
Sbjct: 413 GRLVHFAADDRVRPGDLVTTVITGAAPHHLIAD 445


>gi|89894341|ref|YP_517828.1| hypothetical protein DSY1595 [Desulfitobacterium hafniense Y51]
 gi|123091791|sp|Q24X58|MIAB_DESHY RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|89333789|dbj|BAE83384.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 447

 Score =  444 bits (1142), Expect = e-122,   Method: Composition-based stats.
 Identities = 162/452 (35%), Positives = 260/452 (57%), Gaps = 14/452 (3%)

Query: 18  VDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA 77
           +    VP++    +YGCQM+  D+  + ++   +GY R   ++ ADLI++NTC +RE A 
Sbjct: 1   MSITKVPKKVVTLAYGCQMSERDADTLTEISSQKGYVRSQELEQADLIIVNTCCVRESAE 60

Query: 78  EKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYR 135
            K+   +G +++LK +       L + ++GC+ Q  G  E + +R+P V++  G    + 
Sbjct: 61  NKILGKIGELKHLKEA----NPQLKIAISGCMVQQPGALERLRKRAPHVDIWAGTHNIHE 116

Query: 136 LPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
              LLE A    +V +      +  E + +   G      + A++ I  GC+ FCT+C+V
Sbjct: 117 FQRLLEEAEEKGKVAEVWEKPRETQESVLLAAKGK-----LKAYVNISYGCNNFCTYCIV 171

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
           P+ RG E SR   +++ E R L++ G  E+TLLGQNVN+  G+ LD     F+DLL  + 
Sbjct: 172 PHVRGRERSRQPEEILAEIRALVETGCREVTLLGQNVNS-YGQDLD-RAYDFADLLKDVD 229

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
            I GL R+R+ TSHP+D+SD LI+       L  ++HLP Q+GSD ILK MNR++T   Y
Sbjct: 230 SIDGLWRVRFMTSHPKDLSDKLIETIAAGTHLCEHIHLPFQAGSDEILKGMNRKYTREYY 289

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
              I +I+ + P +++++D IVGFPGET++DF  T++L+ ++ Y+QAF+F YS R GTP 
Sbjct: 290 LSRIAQIKVIIPQVSLTTDIIVGFPGETEEDFEQTLELIRQVRYSQAFTFMYSKRSGTPA 349

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPW 434
           + M EQ+  ++K  RL  L      Q +++    +G+  EVL+E   K    +L GR+  
Sbjct: 350 AQMAEQIPLDIKKRRLQQLITVQNAQSLAWRQEMIGKTCEVLVEGPSKSNPDRLTGRTRG 409

Query: 435 LQSVVLNSKNHNIGDIIKVRITDVKISTLYGE 466
            + VV   +   IG +++V I D    TL+GE
Sbjct: 410 YELVVFPGEAQLIGTLVQVLIQDANSWTLFGE 441


>gi|154494340|ref|ZP_02033660.1| hypothetical protein PARMER_03695 [Parabacteroides merdae ATCC
           43184]
 gi|154085784|gb|EDN84829.1| hypothetical protein PARMER_03695 [Parabacteroides merdae ATCC
           43184]
          Length = 456

 Score =  444 bits (1141), Expect = e-122,   Method: Composition-based stats.
 Identities = 166/446 (37%), Positives = 259/446 (58%), Gaps = 11/446 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F+++YGCQMNV DS  +  +    GY   + ++DAD I +NTC +R+ A +K+Y  L
Sbjct: 19  KKLFIETYGCQMNVADSEVVASIMKMDGYAVTDKIEDADAIFVNTCSVRDNAEQKIYGRL 78

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
              ++LK         L++ V GC+A+   EE++      ++VVGP +Y  LP L+    
Sbjct: 79  QYFQSLKRK----KKSLVIGVLGCMAERVKEELIEVH-HADLVVGPDSYMDLPNLVGAVE 133

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G++ ++ + S ++ ++ +  +  G     G   F++I  GC+ FCT+C+VPYTRG E S
Sbjct: 134 HGEKAINVELSTQETYKDVIPLKLGGVHISG---FVSIMRGCNNFCTYCIVPYTRGRERS 190

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R +  +++E R + D G  E+TLLGQNVN+      +GEK +F  LL  ++E    +R+R
Sbjct: 191 RDIESILNEIRDMRDKGFKEVTLLGQNVNS-YLFEKEGEKISFPALLKRVAEEVPEMRVR 249

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +TTSHP+DMSD  +    + D +   +HLP QSGS RILK MNR++T   Y   I  IR 
Sbjct: 250 FTTSHPKDMSDETLHVIAEHDNICKMIHLPAQSGSSRILKVMNRKYTREWYLDRIAAIRR 309

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQVD 383
           + PD AIS+D   GF  ET++D++ T+ L+ ++GY  AF FKYS R GT  + ++ + V 
Sbjct: 310 ILPDCAISTDLFCGFHSETEEDYQETLSLMREVGYDSAFLFKYSERPGTYAAQHLPDTVS 369

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNS 442
           E  K  RL  +     +     N   +G++ EVLIE   K    +L GR+   + V+ + 
Sbjct: 370 EEEKVRRLQGMIDLQNQLSEESNKRDIGKVFEVLIEGFSKRSREQLFGRTSQNKVVIFDK 429

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
           KN+ +G  IKVRI     +TL+G+ V
Sbjct: 430 KNYRVGQFIKVRINRASSATLFGDPV 455


>gi|307243249|ref|ZP_07525420.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Peptostreptococcus
           stomatis DSM 17678]
 gi|306493377|gb|EFM65359.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Peptostreptococcus
           stomatis DSM 17678]
          Length = 479

 Score =  444 bits (1141), Expect = e-122,   Method: Composition-based stats.
 Identities = 174/460 (37%), Positives = 276/460 (60%), Gaps = 12/460 (2%)

Query: 13  MVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHI 72
           M   + ++    + +F  ++GCQMN +DS  + +M  + GY +  S D ADL++ NTC +
Sbjct: 27  MNEGLFNRTGYRKSYFCTTFGCQMNEHDSEMLINMLEAMGYVQALSEDQADLVIYNTCAV 86

Query: 73  REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGP 130
           RE A  KVY  LG ++++K    K+  D+ +VV GC+ Q     EEI ++   V+++ G 
Sbjct: 87  RENAELKVYGNLGHLKSIK----KKRPDMKIVVCGCMMQQPHVVEEIKKKYRHVDLIFGT 142

Query: 131 QTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190
              Y+ PELLE      +++   + V+ +     +     NRK  + AF+ I  GC+ FC
Sbjct: 143 HNLYKFPELLESTFNRDKIIVDVWDVDGEV----VEGLKSNRKFEIKAFVNIMYGCNNFC 198

Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDL 250
           T+C+VPYTRG E SR    ++DE R L+ +G  E+TLLGQNVN++     D +K +F+ L
Sbjct: 199 TYCIVPYTRGRERSRKPGDIIDEIRSLVKDGTKEVTLLGQNVNSYGKTLEDDQKISFAQL 258

Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
           L  +++I GL R+R+ TSHP+D+SD +I A  D D +  +LHLP Q+GS  +LK MNR +
Sbjct: 259 LREVNKIDGLERIRFMTSHPKDISDDVIYAMRDCDKVCEFLHLPFQAGSTSLLKKMNRHY 318

Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370
           T  +Y +II++ +   P++A S+D ++GFPGETD D   T+D+ +++ Y  AF+F YS R
Sbjct: 319 TKEDYLKIIEKAKREIPNLAFSTDIMIGFPGETDQDVDDTIDICEQVRYDSAFTFIYSKR 378

Query: 371 LGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLV 429
            GTP + ML+QV ++VK +R   + + +       N   +G+ +EVL+E   K+    L 
Sbjct: 379 RGTPAAKMLDQVPDDVKHQRFERVLEVVNRISGEKNANYLGKTLEVLVEGASKKNEAVLT 438

Query: 430 GRSPWLQSVVLNSKN-HNIGDIIKVRITDVKISTLYGELV 468
           G+S   ++V     +   IG +++V+ITD K  +L GELV
Sbjct: 439 GKSRHNKTVNFTGGDKSMIGKLVQVKITDPKSFSLNGELV 478


>gi|254670995|emb|CBA07742.1| conserved hypothetical protein [Neisseria meningitidis alpha153]
          Length = 430

 Score =  444 bits (1141), Expect = e-122,   Method: Composition-based stats.
 Identities = 191/437 (43%), Positives = 271/437 (62%), Gaps = 13/437 (2%)

Query: 36  MNVYDSLRMEDMFFSQ--GYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNS 93
           MN YDS +M  +   +  G E+V   D+AD+I+ NTC +REKA EKV+S LGR+R LK  
Sbjct: 1   MNEYDSDKMLAVLAEEHGGIEQVTQADEADIILFNTCSVREKAQEKVFSDLGRVRPLKEK 60

Query: 94  RIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-ERARFGKRVVDT 152
                  L++ VAGCVA  EGE I++R+P V+VV GPQT +RLP+++ ++   G   VD 
Sbjct: 61  ----NPGLIIGVAGCVASQEGENIIKRAPYVDVVFGPQTLHRLPKMIVDKETSGLSQVDI 116

Query: 153 DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVD 212
            +   +KF+ L        R  G  AF++I EGC K+C+FCVVPYTRG E SR L+ V+ 
Sbjct: 117 SFPEIEKFDHLPPA-----RVEGGAAFVSIMEGCSKYCSFCVVPYTRGEEFSRPLNDVLT 171

Query: 213 EARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
           E   L   GV EI LLGQNVNA+RG+  DGE C F+ LL  + EI G+ R+R+TTSHPR+
Sbjct: 172 EIANLAQQGVKEINLLGQNVNAYRGEMDDGEICDFATLLRIVHEIPGIERMRFTTSHPRE 231

Query: 273 MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAIS 332
            +D +I+ + DL  L+ +LHLP+QSGSDR+L +M R +TA EY+ II ++R++RPD+ +S
Sbjct: 232 FTDSIIECYRDLPKLVSHLHLPIQSGSDRVLSAMKRGYTALEYKSIIRKLRAIRPDLCLS 291

Query: 333 SDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLL 392
           SDFIVGFPGET+ +F  T+ LV  I +  +F F YSPR GTP +N+ +      K  RL 
Sbjct: 292 SDFIVGFPGETEREFEQTLKLVKDIAFDLSFVFIYSPRPGTPAANLHDDTPHEEKVRRLE 351

Query: 393 CLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLNSKNHNIGDII 451
            L + +  +    N   +G +   L+E    K+  +L  R+   + V        I  +I
Sbjct: 352 ALNEVIEAETARINQTMIGTVQRCLVEGISKKDPDQLQARTANNRVVNFTGTPDMINQMI 411

Query: 452 KVRITDVKISTLYGELV 468
            + IT+    +L G++V
Sbjct: 412 DLEITEAYTFSLRGKVV 428


>gi|237739942|ref|ZP_04570423.1| tRNA 2-methylthioadenosine synthase [Fusobacterium sp. 2_1_31]
 gi|229421959|gb|EEO37006.1| tRNA 2-methylthioadenosine synthase [Fusobacterium sp. 2_1_31]
          Length = 435

 Score =  444 bits (1141), Expect = e-122,   Method: Composition-based stats.
 Identities = 159/445 (35%), Positives = 260/445 (58%), Gaps = 12/445 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++  + +YGCQMNV +S +++ +F + GY+     DDAD + LNTC +RE AA +++  L
Sbjct: 2   KKASIITYGCQMNVNESAKIKKIFQNLGYDVTEETDDADAVFLNTCTVREGAATQIFGKL 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           G ++ LK          ++ V GC AQ +GEE++R+ PI+++V+G Q   R+P+ +E+  
Sbjct: 62  GELKALKEK-----KGTIIGVTGCFAQEQGEELVRKFPIIDIVMGNQNIGRIPQAIEKIE 116

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
             +   +     ED+                 TA ++I  GC+ FCTFC+VPY RG E S
Sbjct: 117 NNESTHEVYTDNEDEL----PPRLDAEFASDQTASISITYGCNNFCTFCIVPYVRGRERS 172

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
             L ++V +  + ++ G  EI LLGQNVN++     +G+   F+ LL  + +++G   +R
Sbjct: 173 VPLEEIVKDVEQYVNKGAKEIVLLGQNVNSYGKDFKNGD--NFAKLLEEICKVEGDYIVR 230

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           + + HPRD +D +I      D +   LHLP+QSGS ++L+ M R +T  +Y  ++D+I+S
Sbjct: 231 FVSPHPRDFTDDVIDVIAKNDKISKCLHLPLQSGSSQVLRKMGRGYTKEKYLALVDKIKS 290

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             PD+A+++D IVGFPGET++DF  T+D+V+K+ +  ++ F YS R GT  + M  Q+DE
Sbjct: 291 KIPDVALTADIIVGFPGETEEDFLDTIDVVEKVSFDNSYMFMYSIRKGTKAATMDNQIDE 350

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVLNSK 443
           NVK ERL  L +   +   + +     +I+ VL+E   K+  + L GR+   + V+    
Sbjct: 351 NVKKERLQRLMEVQNKCSFNESSKYKDKIVRVLVEGPSKKNKEVLSGRTSTNKIVLFKGD 410

Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468
            +  G  + V+I + K  TLYGELV
Sbjct: 411 MNLKGQFVNVKINECKTWTLYGELV 435


>gi|312882697|ref|ZP_07742434.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Vibrio
           caribbenthicus ATCC BAA-2122]
 gi|309369658|gb|EFP97173.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Vibrio
           caribbenthicus ATCC BAA-2122]
          Length = 461

 Score =  444 bits (1141), Expect = e-122,   Method: Composition-based stats.
 Identities = 187/436 (42%), Positives = 271/436 (62%), Gaps = 12/436 (2%)

Query: 36  MNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSR 94
           MN YDS +M D+   + GYE     ++AD+++LNTC IREKA EKV+  LGR + LK+ +
Sbjct: 1   MNEYDSSKMADLLNAANGYELTEEPEEADVLLLNTCSIREKAQEKVFHQLGRWKTLKDKK 60

Query: 95  IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV-DTD 153
                 +   V    A  EG+ I  R+P V+V+ GPQT +RLPE++++++     + D  
Sbjct: 61  KGVVIGVGGCV----ATQEGDHIRERAPFVDVIFGPQTLHRLPEMIKQSQDDDAPIMDIS 116

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           +   +KF+RL        +  G TAF++I EGC K+CT+CVVPYTRG E+SR +  V+ E
Sbjct: 117 FPEIEKFDRLP-----EPKAEGATAFVSIMEGCSKYCTYCVVPYTRGEEVSRPMDDVLFE 171

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
             +L + GV E+ LLGQNVNA+RG   DG+ C+F++LL  ++ I G+ R+R+TTSHP + 
Sbjct: 172 IAQLAEQGVREVNLLGQNVNAYRGPMHDGDICSFAELLRLVASIDGIDRIRFTTSHPLEF 231

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
           +D +I  + +   L+ +LHLPVQSGSDRIL  M R HT  EY+ II ++R  RPDI ISS
Sbjct: 232 TDDIIAVYENTPELVSFLHLPVQSGSDRILTMMKRPHTGIEYKSIIRKLRKARPDIQISS 291

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLC 393
           DFIVGFPGETD DF+ TM L+  + +  +FSF +SPR GTP ++    V E  K +RL  
Sbjct: 292 DFIVGFPGETDKDFQDTMKLIKAVDFDMSFSFIFSPRPGTPAADYPCDVSEQEKKDRLYE 351

Query: 394 LQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNSKNHNIGDIIK 452
           LQ+ +  Q + ++   +     VL+E   K+   +L  R+   + V        IG  + 
Sbjct: 352 LQQTINSQAMRYSRQMLDTEQRVLVEGPSKKNLMELRARTENNRVVNFEGSPDLIGQFVD 411

Query: 453 VRITDVKISTLYGELV 468
           V+ITDV  ++L G+LV
Sbjct: 412 VKITDVFANSLRGDLV 427


>gi|190571036|ref|YP_001975394.1| trna-i(6)a37 thiotransferase enzyme [Wolbachia endosymbiont of
           Culex quinquefasciatus Pel]
 gi|229891026|sp|B3CLG9|MIAB_WOLPP RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|190357308|emb|CAQ54737.1| trna-i(6)a37 thiotransferase enzyme [Wolbachia endosymbiont of
           Culex quinquefasciatus Pel]
          Length = 440

 Score =  444 bits (1141), Expect = e-122,   Method: Composition-based stats.
 Identities = 231/444 (52%), Positives = 317/444 (71%), Gaps = 11/444 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +  ++K+YGCQMNVYDS+ ME++    G+  V+  + ADL++LNTCHIREKAAEK+YS L
Sbjct: 2   KGLYIKTYGCQMNVYDSILMENIVKPLGFNVVSDAEQADLVILNTCHIREKAAEKLYSEL 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GRI + +        ++ +VVAGCVAQAEGEE+ RR+P V++VVGPQ+   LPEL+ +A 
Sbjct: 62  GRIHSSQK-----NKEMTIVVAGCVAQAEGEEVFRRAPFVDIVVGPQSIPALPELIVKAS 116

Query: 145 FGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             K  V++TD+    KF++L   D  Y   +G +AFL IQEGCDKFCTFCVVPYTRG E 
Sbjct: 117 RSKGHVINTDFPEVAKFDKLP--DECYGNSQGSSAFLAIQEGCDKFCTFCVVPYTRGAEY 174

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR ++++  EA  L+ NG  EITLLGQNVNA+ G+  +GE      L+  +++I+ L R+
Sbjct: 175 SRPVNEIFREALNLVKNGAKEITLLGQNVNAYHGE-CEGEVWDLGKLISHIAKIEKLERI 233

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           RYTTSHPRDM + L   H +   LMP++HLPVQSGS++IL +MNR+HTA EY  IIDR+R
Sbjct: 234 RYTTSHPRDMHESLYLVHAEESKLMPFVHLPVQSGSNKILHAMNRKHTAEEYLGIIDRLR 293

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
            ++P+I  SSDFIVGFPGET+ DF  TM LV+K+ YAQA+SFKYSPR GTPG+   +QV 
Sbjct: 294 KLKPEIEFSSDFIVGFPGETEKDFEETMKLVEKVKYAQAYSFKYSPRPGTPGAERKDQVP 353

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKGKLVGRSPWLQSV-VLN 441
           E VK ERLL LQ+ + +QQ+ FN + +G+ I VL  +K GK + +++G+SP++QSV V +
Sbjct: 354 EEVKTERLLRLQELISKQQLEFNQSMIGKTIPVLFSDKKGKHQNQIIGKSPYMQSVCVDD 413

Query: 442 SKNHNIGDIIKVRITDVKISTLYG 465
             +     I+ VRI + + ++L G
Sbjct: 414 PDDKYKDKIVNVRILEARQNSLLG 437


>gi|296139507|ref|YP_003646750.1| RNA modification enzyme, MiaB family [Tsukamurella paurometabola
           DSM 20162]
 gi|296027641|gb|ADG78411.1| RNA modification enzyme, MiaB family [Tsukamurella paurometabola
           DSM 20162]
          Length = 503

 Score =  444 bits (1141), Expect = e-122,   Method: Composition-based stats.
 Identities = 162/459 (35%), Positives = 256/459 (55%), Gaps = 17/459 (3%)

Query: 17  IVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA 76
           ++D     + + V++YGCQMNV+DS R+  +    GY R +  + ADL+V NTC +RE A
Sbjct: 1   MIDPAQQSRTYEVRTYGCQMNVHDSERLSGLLEDAGYVRADGGEQADLVVFNTCAVRENA 60

Query: 77  AEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL 136
             K+Y  L  +  +K    +E   + + V GC+AQ +   +++++P V+VV G      L
Sbjct: 61  DNKLYGNLSHLAPIK----RERPGMQIAVGGCLAQKDRGTVVKKAPWVDVVFGTHNIGSL 116

Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
           P LLERAR  ++         D F           R+     +++I  GC+  CTFC+VP
Sbjct: 117 PTLLERARHNEKAEVEIKEALDAFPSTLPAR----RESAYAGWVSISVGCNNTCTFCIVP 172

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE----KCTFSDLLY 252
             RG E+ R    ++ E   L+D GV E+TLLGQNVNA+     D +    K  F+DLL 
Sbjct: 173 SLRGKEVDRRPGDILAEVHALVDQGVSEVTLLGQNVNAYGVNFADPDLPRDKGAFADLLR 232

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
           +   I+GL R+R+T+ HP + +D +I A  +   + P LH+P+QSGSD +LK M R + +
Sbjct: 233 ACGRIEGLERVRFTSPHPAEFTDDVIDAMAETPNICPQLHMPLQSGSDTVLKDMRRSYRS 292

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
            ++  I+DR+R   P  AI++D IVGFPGET++DF+AT+D+V+K  ++ AF+F+YS R G
Sbjct: 293 TKFLGILDRVRERIPHAAITTDIIVGFPGETEEDFQATLDVVEKARFSSAFTFQYSIRPG 352

Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKG---KL 428
           TP +++ +QV + V  ER   L        +  N   VG+ +E+L+    G++     ++
Sbjct: 353 TPAADLPDQVPKQVVQERYDRLIALQERITLEENRKQVGRRVELLVALGEGRKDAATKRM 412

Query: 429 VGRSPWLQSVVLNSKNH-NIGDIIKVRITDVKISTLYGE 466
            GR+   + V          GD+++V IT      L  +
Sbjct: 413 SGRARDGRLVHFAGSTDIRPGDVVEVEITGAAPHHLVAD 451


>gi|324997385|ref|ZP_08118497.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Pseudonocardia
           sp. P1]
          Length = 492

 Score =  444 bits (1141), Expect = e-122,   Method: Composition-based stats.
 Identities = 168/452 (37%), Positives = 254/452 (56%), Gaps = 19/452 (4%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + + + V++YGCQMNV+D+ RM  +    GY R    D AD++V NTC +RE A  K+Y 
Sbjct: 1   MSRSYTVRTYGCQMNVHDTERMAGLLEQAGYARAEDPDAADVVVFNTCAVRENADNKLYG 60

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            LG +R  K +      D+ + V GC+AQ + + I R++P V+VV G    + LP LLER
Sbjct: 61  NLGHLRPRKQA----NPDMQIAVGGCLAQKDRDTITRKAPWVDVVFGTHNVHALPTLLER 116

Query: 143 ARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           AR  +   V+   S+E     L        R+     +++I  GC+  CTFC+VP  RG 
Sbjct: 117 ARHNETAEVEIAESLEVFPSTLP-----ARRESAYAGWVSISVGCNNTCTFCIVPALRGK 171

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E  R    V+ E   L   GV E+TLLGQNVNA  G+ + G++  FS LL +   ++GL 
Sbjct: 172 ERDRRPGDVLAEVEALAAEGVLEVTLLGQNVNA-YGQDM-GDREAFSKLLRACGGVEGLE 229

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+T+ HPRD +  +I A  +   + P LH+P+QSGSD +L+ M R + +  + +I+  
Sbjct: 230 RVRFTSPHPRDFTSDVIAAMAETPNVCPQLHMPLQSGSDAVLRRMRRSYRSDRFLRILSD 289

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R   P  AIS+D IVGFPGET++DF+AT+D+V    ++QAF+F+YSPR GTP ++M  Q
Sbjct: 290 VRESIPHAAISTDIIVGFPGETEEDFQATLDVVAAARFSQAFTFQYSPRPGTPAADMDGQ 349

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKG---KLVGRSPWLQS 437
           + + V  ER   L     E     N A  G+ +E+L+    G++     +L GR+   + 
Sbjct: 350 LPKKVVQERYERLVALQEEISWEENRAQEGREVELLVSTGEGRKDDATRRLTGRARDGRL 409

Query: 438 VVL---NSKNHNIGDIIKVRITDVKISTLYGE 466
           V     ++     GD++ VRI       L  +
Sbjct: 410 VHFAPGDATGIRPGDLVTVRIDYGAPHHLVAD 441


>gi|317050742|ref|YP_004111858.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Desulfurispirillum
           indicum S5]
 gi|316945826|gb|ADU65302.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Desulfurispirillum
           indicum S5]
          Length = 441

 Score =  444 bits (1141), Expect = e-122,   Method: Composition-based stats.
 Identities = 177/448 (39%), Positives = 265/448 (59%), Gaps = 11/448 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + QR F+K+YGCQMN  DS R+  +  + GYE V+ + +ADL + NTC +REKA +KV+S
Sbjct: 1   MTQRAFIKTYGCQMNSGDSERIRGILVAHGYEMVSDVKEADLAIFNTCSVREKAEQKVFS 60

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +GR+R  K           + + GC+ Q + E ILR++P++++V G      L + +  
Sbjct: 61  DIGRLRGQKERH----PGFRIALCGCIPQVQREGILRKNPLIDIVFGVNNISGLMDFIAE 116

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           A+ GKR    +   ++ FE  S  D    R+  + AF+TI  GCD +C++C+VPYTRG E
Sbjct: 117 AQQGKRTCRVE---DEFFE--SEYDMPSQREDAMKAFVTIMNGCDNYCSYCIVPYTRGRE 171

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SRS   ++ E R+L+D+GV E+TLLGQNVN++R +   G    F  LL+ + +I  L R
Sbjct: 172 RSRSAPSILAEIRQLVDDGVREVTLLGQNVNSYRWQDKAGALVDFPQLLHLVHDIPELQR 231

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+ TSHP+D S+ +++A   L  +  YLHLP+Q+GS+RILK MNR +T  EY   I R+
Sbjct: 232 IRFVTSHPKDFSEAMMEAMA-LPRVCKYLHLPIQAGSNRILKLMNRGYTREEYLAKIARL 290

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           +   P +A+SSDF+VGFPGET++DF  TMD+++++ Y Q F F YS R  T  + M +QV
Sbjct: 291 KERIPGVALSSDFLVGFPGETEEDFLQTMDILEQVEYKQIFGFNYSVRPETKAATMADQV 350

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441
              V  ERL  L    +          +G  + VL+E   K     L GR+ +   V   
Sbjct: 351 PFEVMNERLNRLFAAQQSISHRLQQTYLGTTLGVLVEGASKNNPAMLAGRTDFNTIVHFA 410

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELVV 469
                IG ++ V I + +  TLYGE++ 
Sbjct: 411 GGAELIGRLVDVHINETREFTLYGEVLA 438


>gi|290953586|ref|ZP_06558207.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Francisella
           tularensis subsp. holarctica URFT1]
 gi|295313087|ref|ZP_06803777.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Francisella
           tularensis subsp. holarctica URFT1]
          Length = 427

 Score =  444 bits (1141), Expect = e-122,   Method: Composition-based stats.
 Identities = 185/436 (42%), Positives = 268/436 (61%), Gaps = 12/436 (2%)

Query: 36  MNVYDSLRMEDMFFSQGYER-VNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSR 94
           MN YDS RM ++          +   DAD+I++NTC IREKA EKV+  LGR + LK   
Sbjct: 1   MNEYDSARMHEVLNEHFDTVKTDDYKDADIILINTCSIREKAQEKVFHELGRWKGLK--- 57

Query: 95  IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV-VDTD 153
            K   DL++ V GCVA  EGE I++R+P V++V GPQT +RLPE++++ +  ++  VD  
Sbjct: 58  -KTNEDLIIGVGGCVASQEGENIIKRAPFVDLVFGPQTIHRLPEMIKQKQKSQQSQVDIS 116

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           +   +KF+ L        +  G  A+++I EGCDK+C++CVVPYTRG E++R    V+ E
Sbjct: 117 FPEVEKFDYLP-----EPKAEGAKAYVSIMEGCDKYCSYCVVPYTRGPEVNRPFEDVLAE 171

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
              L + GV EITLLGQNVN + G   +G+    + L++ ++EI G+ R+R+TTSHP + 
Sbjct: 172 CAILAEQGVKEITLLGQNVNHYLGPMENGQTADLALLIHFIAEIDGIERIRFTTSHPVEF 231

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
           S  LI A+  +  L  +LHLPVQ GSDRIL +M R HT  E++Q I ++R++RPDI ISS
Sbjct: 232 SQNLIDAYATVPELANHLHLPVQHGSDRILINMKRNHTILEFKQKIRKLRAIRPDITISS 291

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLC 393
           DFIVGFPGET++DF+  +DLV +I + Q+FSF YS R GTP +++ +     VK +RL  
Sbjct: 292 DFIVGFPGETEEDFQKLLDLVKEINFDQSFSFIYSKRPGTPAADLPDDTPMEVKKDRLKR 351

Query: 394 LQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLNSKNHNIGDIIK 452
           LQ  L       +   VG    +L++    K+   L GR+   + V        IG    
Sbjct: 352 LQDLLNSNAQIISRQMVGTNQRILVDGTSKKDDNILSGRTENNRVVNFKGDKSLIGQFAM 411

Query: 453 VRITDVKISTLYGELV 468
           V+IT+   ++L GEL+
Sbjct: 412 VKITESLPNSLRGELI 427


>gi|29829021|ref|NP_823655.1| methylase of isopentenylated A37 derivatives in tRNA [Streptomyces
           avermitilis MA-4680]
 gi|81720067|sp|Q82KC4|MIAB_STRAW RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|29606127|dbj|BAC70190.1| putative methylase of isopentenylated A37 derivatives in tRNA
           [Streptomyces avermitilis MA-4680]
          Length = 508

 Score =  443 bits (1140), Expect = e-122,   Method: Composition-based stats.
 Identities = 174/463 (37%), Positives = 257/463 (55%), Gaps = 20/463 (4%)

Query: 13  MVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDD--ADLIVLNTC 70
           M S    Q +  + + V++YGCQMNV+DS R+  +    GY R     D  AD++V NTC
Sbjct: 1   MSSIDRSQPVGVKTYEVRTYGCQMNVHDSERLSGLLEDAGYVRAPDGSDGDADVVVFNTC 60

Query: 71  HIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGP 130
            +RE A  ++Y  LGR+  +K  R      + + V GC+AQ + + I+ ++P V+VV G 
Sbjct: 61  AVRENADNRLYGNLGRLAPMKTKR----PGMQIAVGGCLAQKDRDTIVTKAPWVDVVFGT 116

Query: 131 QTYYRLPELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKF 189
               +LP LLERAR  +   V+   S+E     L        R+    A+++I  GC+  
Sbjct: 117 HNIGKLPVLLERARVQEEAQVEIAESLEAFPSTLPT-----RRESAYAAWVSISVGCNNT 171

Query: 190 CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSD 249
           CTFC+VP  RG E  R    ++ E   L+  GV EITLLGQNVNA  G  + G++  FS 
Sbjct: 172 CTFCIVPALRGKEKDRRTGDILAEIEALVGEGVSEITLLGQNVNA-YGSDI-GDREAFSK 229

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
           LL +  +I GL R+R+T+ HPRD +D +I A  +   +MP LH+P+QSGSD +LK+M R 
Sbjct: 230 LLRACGQIDGLERVRFTSPHPRDFTDDVIAAMAETPNVMPQLHMPMQSGSDTVLKAMRRS 289

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369
           +    Y  II+++R+  P  AI++D IVGFPGET++DF  TM  V +  + QAF+F+YS 
Sbjct: 290 YRQDRYLGIIEKVRAAIPHAAITTDIIVGFPGETEEDFEQTMHAVREARFTQAFTFQYSK 349

Query: 370 RLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKG-- 426
           R GTP + M  Q+ + V   R   L     E     N   VG+ +E+++ E  G++ G  
Sbjct: 350 RPGTPAATMENQIPKEVVQARYERLVALQEEISWDENKKQVGRTLELMVAEGEGRKDGAT 409

Query: 427 -KLVGRSPWLQSVVL--NSKNHNIGDIIKVRITDVKISTLYGE 466
            +L GR+P  + V      +    GD++ V +T      L  E
Sbjct: 410 HRLSGRAPDNRLVHFTKPDEEVRPGDVVTVEVTYAAPHHLLAE 452


>gi|94269306|ref|ZP_01291426.1| tRNA-i(6)A37 modification enzyme MiaB [delta proteobacterium
           MLMS-1]
 gi|93451266|gb|EAT02157.1| tRNA-i(6)A37 modification enzyme MiaB [delta proteobacterium
           MLMS-1]
          Length = 446

 Score =  443 bits (1140), Expect = e-122,   Method: Composition-based stats.
 Identities = 176/443 (39%), Positives = 261/443 (58%), Gaps = 6/443 (1%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
            +++++GCQMN  DS  M  +     Y   +  ++AD IV+NTC IR KAA+K YS LG 
Sbjct: 5   LYIETFGCQMNERDSEIMVQLLAHDSYLETSRPEEADCIVVNTCSIRGKAAQKAYSLLGG 64

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
            ++LK         L++ V GCVAQ +G+ +LR+ P +++VVGPQ  YRLPE L  A   
Sbjct: 65  YKSLKERH----PHLVIAVTGCVAQQDGQALLRKMPHLDLVVGPQNIYRLPE-LVAAARR 119

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           +        +   FE    +            F+TI +GC+ FCT+CVVP+TRG EISR 
Sbjct: 120 QAARQVATELSPAFEIPPFLPAIDPAAANPRRFVTIMQGCNNFCTYCVVPHTRGREISRK 179

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
              +V E R L  +GV E+TLLGQNVN++       EK  F  LL  + E+ G+ R+R+T
Sbjct: 180 PEDIVAEVRHLAAHGVREVTLLGQNVNSYGLDRPAAEKLPFPALLGKVVEVAGIDRVRFT 239

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
           TSHP+D+S+ L+ A   LD L P+ HLPVQSGSDR+L  MNR+++   Y + +  +R   
Sbjct: 240 TSHPKDLSEELMAAFARLDKLCPHFHLPVQSGSDRVLARMNRKYSRESYLEKVAALRQHC 299

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           P+IAI++D IVGFPGE++ DF  TM+L++++ Y  AFSFKYS R     +   ++V E +
Sbjct: 300 PEIAITTDIIVGFPGESEADFEQTMELLEQVRYDSAFSFKYSDRPNAAAARFADKVPEEL 359

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK-NH 445
           K+ERL  LQ +  E         VG+ +EV++E   K++G+  GR+   + V   S+ + 
Sbjct: 360 KSERLSRLQARQDEISAEIRRTLVGRTVEVMVEGRSKKQGQWSGRTRENRIVNFPSEHDL 419

Query: 446 NIGDIIKVRITDVKISTLYGELV 468
             G ++ V + +    +L G +V
Sbjct: 420 QPGQLLPVHLKETCRHSLRGVIV 442


>gi|239982707|ref|ZP_04705231.1| hypothetical protein SalbJ_24974 [Streptomyces albus J1074]
          Length = 480

 Score =  443 bits (1140), Expect = e-122,   Method: Composition-based stats.
 Identities = 172/452 (38%), Positives = 259/452 (57%), Gaps = 21/452 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNS---MDDADLIVLNTCHIREKAAEKVY 81
           + + V++YGCQMNV+DS R+  +    GY R        DAD++V NTC +RE A  ++Y
Sbjct: 17  KTYEVRTYGCQMNVHDSERLAGLLEGAGYVRSPEGTEEGDADVVVFNTCAVRENADNRLY 76

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR+  +K  R      + + V GC+AQ + + I +R+P V+VV G     +LP LLE
Sbjct: 77  GNLGRLAPMKTRR----PGMQIAVGGCLAQKDRDTITKRAPWVDVVFGTHNIGKLPVLLE 132

Query: 142 RARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           RAR  +   V+   S+E     L        R+    A++++  GC+  CTFC+VP  RG
Sbjct: 133 RARVQEEAQVEIAESLEAFPSTLPT-----RRESAYAAWVSVSVGCNNTCTFCIVPALRG 187

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E  R    ++ E   L+  GV EITLLGQNVNA  G  + G++  FS LL +  +I+GL
Sbjct: 188 KEKDRRTGDILAEVEALVAEGVSEITLLGQNVNA-YGSDI-GDRQAFSKLLRACGKIEGL 245

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+T+ HPRD +D +I A  +   +MP LH+P+QSGSD +L++M R +    +  II+
Sbjct: 246 ERVRFTSPHPRDFTDDVIAAMAETPNVMPQLHMPLQSGSDTVLRAMRRSYRQERFLSIIE 305

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R+  PD AI++D IVGFPGET++DF+ T+  V +  +AQAF+F+YS R GTP + M  
Sbjct: 306 KVRAAIPDAAITTDIIVGFPGETEEDFQQTLHTVREARFAQAFTFQYSKRPGTPAAEMDG 365

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKG---KLVGRSPWLQ 436
           Q+ + V  ER + L     E     N    G+++EV++ E  G++ G   +L GR+P  +
Sbjct: 366 QIPKEVVQERYMRLVALQEEISWEENKKQTGRVLEVMVAEGEGRKDGATRRLSGRAPDNR 425

Query: 437 SVVL--NSKNHNIGDIIKVRITDVKISTLYGE 466
            V      +    GD++ V IT      L  E
Sbjct: 426 LVHFTKPDEEVRPGDVVTVEITYAAPHHLLAE 457


>gi|189460206|ref|ZP_03008991.1| hypothetical protein BACCOP_00843 [Bacteroides coprocola DSM 17136]
 gi|189433067|gb|EDV02052.1| hypothetical protein BACCOP_00843 [Bacteroides coprocola DSM 17136]
          Length = 457

 Score =  443 bits (1140), Expect = e-122,   Method: Composition-based stats.
 Identities = 163/447 (36%), Positives = 255/447 (57%), Gaps = 11/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F+++YGCQMNV DS  +  +    GY    S+D+AD + +NTC IR+ A +K+ + L
Sbjct: 19  KKLFIETYGCQMNVADSEVIASIMQMAGYSPCESLDEADAVFMNTCSIRDNAEQKILNRL 78

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
               +L+  R      L+V V GC+A+    +++     V++V GP  Y  LP+L+    
Sbjct: 79  EFFHSLRKKRK----HLIVGVLGCMAERVKNDLIENH-HVDLVAGPDAYLTLPDLIGAVE 133

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G++ ++ + S  + +  +       N   G   F++I  GC+ FC +C+VPYTRG E S
Sbjct: 134 AGEKAINVELSTTETYRDVIPSRICGNHISG---FVSIMRGCNNFCHYCIVPYTRGRERS 190

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R +  +++E   L   G  E+TLLGQNVN++R +  +GE  TF  LL  ++E    +R+R
Sbjct: 191 RDVESILNEVHDLQQKGYKEVTLLGQNVNSYRFE-REGEVVTFPMLLRIVAEAVPEMRVR 249

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +TTSHP+DMSD  +    ++  +  ++HLPVQSGS RILK MNR++T   Y + ++ IR 
Sbjct: 250 FTTSHPKDMSDETLYVIAEVPNVCKHIHLPVQSGSSRILKLMNRKYTREWYLERVEAIRR 309

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN-MLEQVD 383
           + PD  +S+D   GF  ET++D + ++ L+ +  Y  AF FKYS R GT  S  + + V 
Sbjct: 310 IIPDCGLSTDIFSGFHSETEEDHQMSLSLMRECAYDSAFMFKYSERPGTYASKHLPDDVP 369

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRSPWLQSVVLNS 442
           E VK  RL  + +   +     N   VG+  EVL+E   K  K +L GR+   + VV + 
Sbjct: 370 EEVKIRRLNEMIELQNQLSAESNARNVGKTFEVLVEGISKRSKEQLFGRTEQNKVVVFDR 429

Query: 443 KNHNIGDIIKVRITDVKISTLYGELVV 469
             H IGD+++VRIT+   +TL G  V 
Sbjct: 430 GTHRIGDLVRVRITESSSATLKGIEVT 456


>gi|301312074|ref|ZP_07217996.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacteroides sp. 20_3]
 gi|300830176|gb|EFK60824.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacteroides sp. 20_3]
          Length = 457

 Score =  443 bits (1140), Expect = e-122,   Method: Composition-based stats.
 Identities = 162/446 (36%), Positives = 258/446 (57%), Gaps = 11/446 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F+++YGCQMNV DS  +  +    GY    ++++AD I +NTC +R+ A +K+Y  L
Sbjct: 19  RKLFIETYGCQMNVADSEVVASIMKMDGYSMTENIEEADAIFVNTCSVRDNAEQKIYGRL 78

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
              ++LK         L+V V GC+A+   E+++      ++VVGP +Y  LP L+    
Sbjct: 79  QYFQSLKRK----KKSLIVGVLGCMAERVKEDLIHVH-HADLVVGPDSYLDLPNLVGAVE 133

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G++ ++ + S ++ ++ +  +        G   F++I  GC+ FCT+C+VPYTRG E S
Sbjct: 134 HGEKAINVELSTQETYKDVIPLKLPGVHISG---FVSIMRGCNNFCTYCIVPYTRGRERS 190

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R +  +++E R + + G  E+TLLGQNVN+      +GE  TF  LL  +++    +R+R
Sbjct: 191 RDIESILNEIRDMHEKGFKEVTLLGQNVNS-YSFEKEGETITFPILLDCVAKEVPDMRIR 249

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +TTSHP+DMSD  ++     D +  ++HLP QSGS RILK MNR++T   Y   I  IR 
Sbjct: 250 FTTSHPKDMSDDTLRVIAANDNICKFIHLPAQSGSSRILKVMNRKYTREWYLDRIAAIRR 309

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQVD 383
           + PD AIS+D   GF  ET++D++ T+ L+ ++GY  AF FKYS R GT  + ++ + V 
Sbjct: 310 IVPDCAISTDLFCGFHSETEEDYQETLSLMREVGYDSAFLFKYSERPGTYAASHLEDNVP 369

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNS 442
           E  K  RL  +     +     N   +G+  EVLIE   K    +L GR+   + V+ + 
Sbjct: 370 EEEKVRRLQGMIDLQNKLSEESNLRDIGKTFEVLIEGFSKRSREQLFGRTSQNKVVIFDK 429

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
           KN+++G  IKV+I     +TL+GE V
Sbjct: 430 KNYHVGQFIKVKIHKASSATLFGEPV 455


>gi|257060632|ref|YP_003138520.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Cyanothece sp.
           PCC 8802]
 gi|256590798|gb|ACV01685.1| RNA modification enzyme, MiaB family [Cyanothece sp. PCC 8802]
          Length = 446

 Score =  443 bits (1140), Expect = e-122,   Method: Composition-based stats.
 Identities = 179/454 (39%), Positives = 278/454 (61%), Gaps = 23/454 (5%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + + + ++GCQMN  DS RM  +  + G+      + ADLI+ NTC IR+ A +KVYS+L
Sbjct: 6   RHYHITTFGCQMNKADSERMAGILENMGFIWSEDPNQADLILYNTCTIRDNAEQKVYSYL 65

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR    K+       DL ++VAGCVAQ EGE+ILRR P +++V+GPQ   RL +LL++  
Sbjct: 66  GRQAKRKHE----NPDLTLIVAGCVAQQEGEQILRRVPELDLVMGPQHANRLEDLLQQVF 121

Query: 145 FGKRVVDTD--YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            G +VV T+  + +ED  +          R   +TA++ +  GC++ C++CVVP  RG+E
Sbjct: 122 DGNQVVATEPIHIIEDITKP--------RRDSTITAWVNVIYGCNERCSYCVVPNVRGVE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG------EKCTFSDLLYSLSE 256
            SR+   ++ E   L   G  E+TLLGQN++A  G+ L G       + T +DLLY++ +
Sbjct: 174 QSRTPEAILAEMELLGKQGYKEVTLLGQNIDA-YGRDLPGVTESGRHQHTLTDLLYTVHD 232

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           + G+ R+R+ TSHPR  ++ LI A  +L  +  + H+P QSG + ILK+M R +T  +YR
Sbjct: 233 VVGIERIRFATSHPRYFTERLIAACQELSKVCEHFHIPFQSGDNDILKAMKRGYTHEKYR 292

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
           QIID+IR   PD +IS+D IVGFPGET++ F  T++LV+ IG+ Q  +  YSPR GTP +
Sbjct: 293 QIIDKIRDYMPDASISADAIVGFPGETEEQFENTLNLVEDIGFDQLNTAAYSPRPGTPAA 352

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSPWL 435
               Q+ E VK++RL  L   + ++    +   +G+I EVL+E ++ K+  +++GR+   
Sbjct: 353 LWDNQLSEEVKSDRLQRLNHLVAQKAAERSQRYLGRIEEVLVEDQNPKDSTQVMGRTRGN 412

Query: 436 QSVVLNSK-NHNIGDIIKVRITDVKISTLYGELV 468
           +        N   G +IKV+IT+V+  +L GE+V
Sbjct: 413 RLTFFKGDINQLKGRLIKVKITEVRAFSLTGEIV 446


>gi|295395412|ref|ZP_06805611.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Brevibacterium
           mcbrellneri ATCC 49030]
 gi|294971734|gb|EFG47610.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Brevibacterium
           mcbrellneri ATCC 49030]
          Length = 488

 Score =  443 bits (1140), Expect = e-122,   Method: Composition-based stats.
 Identities = 164/445 (36%), Positives = 251/445 (56%), Gaps = 16/445 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + + VK+YGCQMNV+DS R+  +    GY      + AD++V NTC +RE A  ++Y  L
Sbjct: 7   RTYEVKTYGCQMNVHDSERLSGLLDDAGYTPAEPNEQADVVVFNTCAVRENADNRLYGNL 66

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR+  +K        +L + V GC+AQ + + I+ R+P V+VV G      LP LLERAR
Sbjct: 67  GRLAEVKE----THPELQIAVGGCMAQKDRDTIVERAPWVDVVFGTHNMGSLPVLLERAR 122

Query: 145 FGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             K   V+   S+E     L        R+   + +++I  GC+  CTFC+VP+ RG E 
Sbjct: 123 HNKEAQVEIKESLEVFPSTLPT-----RRESTHSGWVSISVGCNNTCTFCIVPHLRGKEK 177

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
            R    ++ E   L   GV E+TLLGQNVN++  +  D  +  F  LL ++ +++G+ R+
Sbjct: 178 DRRPGDILAEVEALAAQGVIEVTLLGQNVNSYGTEFRD--RQAFGKLLRAVGKVQGIERV 235

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+T+ HP   SD +I A  +   +MP LH+P+QSGSD +LK+M R +    +  I+D++R
Sbjct: 236 RFTSPHPAAFSDDVIDAMAETPTVMPQLHMPLQSGSDTVLKAMRRSYRTKRFMGILDKVR 295

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              P  +I++D IVGFPGET++DF+ TMD+V +  + QA++F+YS R GTP + M  Q+ 
Sbjct: 296 ERIPHASITTDIIVGFPGETEEDFQQTMDVVREARFTQAYTFQYSIRPGTPAAAMENQIP 355

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKGKLVGRSPWLQSVVL-- 440
           ++V  ER   L     E     N ACVG  +EVLI      + G++ GR+   + V +  
Sbjct: 356 KDVVQERFERLVALQDEIAWEENKACVGNQVEVLINTGPDAQHGRMSGRARDNRLVHVRA 415

Query: 441 -NSKNHNIGDIIKVRITDVKISTLY 464
               +   GDI+   +T+ K   L 
Sbjct: 416 QEGLDARPGDIVTATVTEAKPYFLI 440


>gi|313893403|ref|ZP_07826975.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Veillonella sp. oral
           taxon 158 str. F0412]
 gi|313442044|gb|EFR60464.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Veillonella sp. oral
           taxon 158 str. F0412]
          Length = 438

 Score =  443 bits (1139), Expect = e-122,   Method: Composition-based stats.
 Identities = 156/445 (35%), Positives = 246/445 (55%), Gaps = 13/445 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + +++ +YGCQMN  DS R+     S GY     ++ ADLI+LNTC +RE A  KVY  +
Sbjct: 2   KSYYIYTYGCQMNTADSERLSHQLESVGYTPTEDVETADLILLNTCAVRENAETKVYGRI 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           G +  LK        +L++ V GC+AQ    E+ +R+P +++V+G      + E++E  +
Sbjct: 62  GELMRLKRK----NKNLILAVTGCMAQKNQAEMFKRAPHIDIVLGTHNIQHINEMIEEVQ 117

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G       + +    +   + +          A++ I  GC+KFCT+C+VP+ RG EIS
Sbjct: 118 RGHT-----HQISVDMDNTVLPELEAKPNGTFYAWVPIMNGCNKFCTYCIVPHVRGREIS 172

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R +  +V E   L   G  EITLLGQNVN++     DG    F  L+ +L  I G+ R+R
Sbjct: 173 RPVEAIVKEVTDLGAKGFKEITLLGQNVNSYGLDFKDG--TDFGTLIDALDGIPGIERIR 230

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           Y TSHP+DM+  +I A G    ++ +LHLP+QSGSDRILK MNR +T   Y++++   R 
Sbjct: 231 YMTSHPQDMTKSMIDALGRSSNIVTHLHLPIQSGSDRILKKMNRHYTVEHYKELLSYCRE 290

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
              ++ +++D IVGFPGET++DF+AT+ L+  + Y  A++F YS R GTP + M +Q+ E
Sbjct: 291 KIKNVVVTTDIIVGFPGETEEDFQATLQLLKDVRYDMAYTFIYSKRSGTPAATMDDQIPE 350

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLNSK 443
            VK  RL  L     E     N    GQ+ ++++E    +++    GR+   + V+    
Sbjct: 351 EVKRVRLQTLMDVQNEISYELNKPMEGQVFDIIVEGPSPRDEDMWFGRTSGNKMVLFPKD 410

Query: 444 NHN-IGDIIKVRITDVKISTLYGEL 467
           +   IG+ +   I   +    YG +
Sbjct: 411 DSLSIGETVPAYIDKAQTWVCYGTI 435


>gi|253798186|ref|YP_003031187.1| hypothetical protein TBMG_01242 [Mycobacterium tuberculosis KZN
           1435]
 gi|289553483|ref|ZP_06442693.1| conserved alanine and arginine rich protein [Mycobacterium
           tuberculosis KZN 605]
 gi|289746535|ref|ZP_06505913.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|298526202|ref|ZP_07013611.1| conserved hypothetical protein [Mycobacterium tuberculosis
           94_M4241A]
 gi|308378082|ref|ZP_07481451.2| conserved alanine and arginine rich protein [Mycobacterium
           tuberculosis SUMu009]
 gi|253319689|gb|ACT24292.1| conserved alanine and arginine rich protein [Mycobacterium
           tuberculosis KZN 1435]
 gi|289438115|gb|EFD20608.1| conserved alanine and arginine rich protein [Mycobacterium
           tuberculosis KZN 605]
 gi|289687063|gb|EFD54551.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|298495996|gb|EFI31290.1| conserved hypothetical protein [Mycobacterium tuberculosis
           94_M4241A]
 gi|308353677|gb|EFP42528.1| conserved alanine and arginine rich protein [Mycobacterium
           tuberculosis SUMu009]
 gi|328457959|gb|AEB03382.1| conserved alanine and arginine rich protein [Mycobacterium
           tuberculosis KZN 4207]
          Length = 545

 Score =  443 bits (1139), Expect = e-122,   Method: Composition-based stats.
 Identities = 169/469 (36%), Positives = 266/469 (56%), Gaps = 20/469 (4%)

Query: 9   GVAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLN 68
           GV    +    +    + + V++YGCQMNV+DS R+  +  + GY R     +AD++V N
Sbjct: 42  GVTGEGAGPPVRRAPARTYQVRTYGCQMNVHDSERLAGLLEAAGYRRATDGSEADVVVFN 101

Query: 69  TCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVV 128
           TC +RE A  ++Y  L  +   K +      D+ + V GC+AQ + + +LRR+P V+VV 
Sbjct: 102 TCAVRENADNRLYGNLSHLAPRKRA----NPDMQIAVGGCLAQKDRDAVLRRAPWVDVVF 157

Query: 129 GPQTYYRLPELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCD 187
           G      LP LLERAR  K   V+   +++     L       +R+    A+++I  GC+
Sbjct: 158 GTHNIGSLPTLLERARHNKVAQVEIAEALQQFPSSLP-----SSRESAYAAWVSISVGCN 212

Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG----E 243
             CTFC+VP  RG E+ RS + ++ E R L+++GV E+TLLGQNVNA+     D      
Sbjct: 213 NSCTFCIVPSLRGREVDRSPADILAEVRSLVNDGVLEVTLLGQNVNAYGVSFADPALPRN 272

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
           +  F++LL +  +I GL R+R+T+ HP + +D +I+A      + P LH+P+QSGSDRIL
Sbjct: 273 RGAFAELLRACGDIDGLERVRFTSPHPAEFTDDVIEAMAQTRNVCPALHMPLQSGSDRIL 332

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           ++M R + A  Y  II+R+R+  P  AI++D IVGFPGET++DF AT+D+V +  +A AF
Sbjct: 333 RAMRRSYRAERYLGIIERVRAAIPHAAITTDLIVGFPGETEEDFAATLDVVRRARFAAAF 392

Query: 364 SFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHG 422
           +F+YS R GTP + +  Q+ + V  ER   L     +  +  N A VGQ +EVL+    G
Sbjct: 393 TFQYSKRPGTPAAQLDGQLPKAVVQERYERLIALQEQISLEANRALVGQAVEVLVATGEG 452

Query: 423 KEK---GKLVGRSPWLQSVVLNS--KNHNIGDIIKVRITDVKISTLYGE 466
           ++     ++ GR+   + V   +       GD+I  ++T+     L  +
Sbjct: 453 RKDTVTARMSGRARDGRLVHFTAGQPRVRPGDVITTKVTEAAPHHLIAD 501


>gi|269797930|ref|YP_003311830.1| RNA modification enzyme, MiaB family [Veillonella parvula DSM 2008]
 gi|269094559|gb|ACZ24550.1| RNA modification enzyme, MiaB family [Veillonella parvula DSM 2008]
          Length = 437

 Score =  443 bits (1139), Expect = e-122,   Method: Composition-based stats.
 Identities = 157/446 (35%), Positives = 249/446 (55%), Gaps = 13/446 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + +++ +YGCQMN  DS R+     S GY    +++ ADLI+LNTC +RE A  KVY  +
Sbjct: 2   KSYYIYTYGCQMNTADSERLSHQLESVGYIPTENVETADLILLNTCAVRENAETKVYGRI 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           G ++ LK    +   +L++ V GC+AQ    E+ +R+P +++V+G      + E++E  +
Sbjct: 62  GELKRLK----RNNKNLIIAVTGCMAQKNQAEMFKRAPHIDIVLGTHNIQHINEMIEEVQ 117

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G       + +    +   + +          A++ I  GC+KFCT+C+VP+ RG EIS
Sbjct: 118 HGHT-----HQISVDMDNTVLPELEAKPNGSFYAWVPIMNGCNKFCTYCIVPHVRGREIS 172

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R +  +V E   L   G  EITLLGQNVN++     DG    F  L+ +L  I G+ R+R
Sbjct: 173 RPVEAIVKEVTDLGVKGFKEITLLGQNVNSYGLDFKDG--TDFGTLVDALDGIPGIERIR 230

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           Y TSHP+DMS  +I A G    ++ +LHLP+QSGS+RILK MNR +T   Y++++   R 
Sbjct: 231 YMTSHPQDMSKSMIDALGRSSNIVTHLHLPIQSGSNRILKKMNRHYTVEHYKELLSYCRE 290

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
              D+ +++D IVGFPGET+DDF+AT+ L+  + Y  A++F YS R GTP + M +Q+ E
Sbjct: 291 KIKDVVVTTDIIVGFPGETEDDFQATLQLLKDVRYDMAYTFIYSKRSGTPAATMDDQIPE 350

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLNSK 443
            +K  RL  L     E     N    GQ+ ++++E    +++    GR+   + V+    
Sbjct: 351 EIKRVRLQTLMDVQNEISYELNKPMEGQVFDIIVEGPSPRDEDMWFGRTSGNKMVLFPKD 410

Query: 444 NHN-IGDIIKVRITDVKISTLYGELV 468
           +   IG  +   I   +    YG ++
Sbjct: 411 DSLSIGQTVPAHIDKAQTWVCYGSIL 436


>gi|188996756|ref|YP_001931007.1| RNA modification enzyme, MiaB family [Sulfurihydrogenibium sp.
           YO3AOP1]
 gi|229891027|sp|B2V930|MIAB_SULSY RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|188931823|gb|ACD66453.1| RNA modification enzyme, MiaB family [Sulfurihydrogenibium sp.
           YO3AOP1]
          Length = 437

 Score =  443 bits (1139), Expect = e-122,   Method: Composition-based stats.
 Identities = 165/443 (37%), Positives = 268/443 (60%), Gaps = 10/443 (2%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +F++K++GCQMNV DS +M  +  + GY    + ++AD+I++NTC +REK  +KV S LG
Sbjct: 2   KFYIKTFGCQMNVNDSEKMAGILQTLGYTPTENWEEADVILVNTCSVREKPDQKVLSALG 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
             + +K    K   + ++ V GC+AQ  G EI +++P +++V G    + LP LLE A+ 
Sbjct: 62  EFKKVK----KHNPNAVIGVCGCLAQRAGYEIYQKAPFIDIVFGTTNIHHLPNLLEEAKS 117

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G + ++    +++    L        R+   TAF+T+  GCDK CT+C+VP TRG E SR
Sbjct: 118 GNKAIEILEEIDENENLLD--QFPTVRENKYTAFVTVIRGCDKKCTYCIVPTTRGRERSR 175

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            +  ++ E + L+++GV EI L+GQNV A+   G D     F +LL +++E+ G+ R+R+
Sbjct: 176 RIGDILREVQYLVEDGVKEIHLIGQNVTAY---GKDFGDVKFWELLKAVAEVDGVERIRF 232

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
           TT HPRD+ +  IK   DL  +   LHLP+Q+GSDRIL++M+R +T  EY Q I+ ++  
Sbjct: 233 TTGHPRDLDEDTIKVMADLPQICEALHLPIQAGSDRILQAMDRGYTQKEYLQKIELLKKY 292

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P+IA+S+D IVGFPGET +D+  T+ ++ ++ Y Q F+FKYSPR GTP +++       
Sbjct: 293 IPNIALSTDIIVGFPGETYEDYLETVKVIKEVEYDQVFAFKYSPRPGTPAADLPMTESPE 352

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445
             ++RL  L    ++     N     +I+E+L+E+  +E  KLVGR+   + V       
Sbjct: 353 ELSKRLNDLINLQKDITFKKNLEYQDKIVEILVEEINQE-NKLVGRTRTNKLVYAEGSPE 411

Query: 446 NIGDIIKVRITDVKISTLYGELV 468
            +G ++ V+I  V   +L G ++
Sbjct: 412 YLGKLVNVKIEKVNRFSLEGSII 434


>gi|189425188|ref|YP_001952365.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Geobacter
           lovleyi SZ]
 gi|229890544|sp|B3E424|MIAB_GEOLS RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|189421447|gb|ACD95845.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Geobacter lovleyi SZ]
          Length = 438

 Score =  443 bits (1139), Expect = e-122,   Method: Composition-based stats.
 Identities = 173/444 (38%), Positives = 269/444 (60%), Gaps = 9/444 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ ++ + GCQMNV DS R+  M    GY + +   +A LI+ NTC +R  A E +   +
Sbjct: 4   KKLYIDTVGCQMNVNDSERIVTMLQPLGYTQTSRRHEAALILFNTCTVRAGAEECLLQNI 63

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             ++NLK          L+ VAGCVAQ  G E+L++ P V++V G    + +PE+++ A 
Sbjct: 64  ANLKNLKRK----KPGTLIGVAGCVAQQMGAELLQKFPWVDLVFGTHNLHLVPEMVKDAE 119

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G+R  +TD+   D  ERL +      RKR V+AF+T+ +GCD FC++C+VPY RG EIS
Sbjct: 120 AGRRRAETDFL--DSSERLDLFPPIEGRKR-VSAFVTVMQGCDNFCSYCIVPYVRGREIS 176

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R  ++++ E + L   G+ E+ LLGQNVN++  KG   E+ +F++L+ +++ + G+ R+R
Sbjct: 177 RRFAEILQEVQDLAAQGLREVVLLGQNVNSYGLKGE--EQPSFAELVRAVAAVSGIDRVR 234

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           + TSHP+DMSD LI    DL  L   LHLP Q+G++RILK+MNR ++   Y + I ++R 
Sbjct: 235 FVTSHPKDMSDDLIACFADLAKLCGSLHLPAQAGNNRILKAMNRGYSREHYLETIYKLRQ 294

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
            RP+I I+ D IVGFPGET+ +F  T+ L++++ Y   FSF YSPR GT  + + +++ +
Sbjct: 295 ARPEIKITGDMIVGFPGETEAEFEETLSLMEEVRYFDLFSFVYSPRPGTKAAELSDELAK 354

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
            VK  RL  LQK         N+  VG   +VL+E   K  G++ GR    + V L    
Sbjct: 355 EVKLARLDRLQKLQAVHSRIHNETYVGSTQQVLVEGLAKRHGQVSGRCDSGRIVNLAGSP 414

Query: 445 HNIGDIIKVRITDVKISTLYGELV 468
             IG ++ V+I +   ++L GEL+
Sbjct: 415 ALIGKLVDVKILEGYANSLLGELL 438


>gi|260061724|ref|YP_003194804.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Robiginitalea
           biformata HTCC2501]
 gi|88785856|gb|EAR17025.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Robiginitalea biformata
           HTCC2501]
          Length = 481

 Score =  443 bits (1139), Expect = e-122,   Method: Composition-based stats.
 Identities = 178/456 (39%), Positives = 256/456 (56%), Gaps = 22/456 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ +++SYGCQMN  DS  +  +   +G+   + +++ADLI++NTC IREKA + V   L
Sbjct: 24  RKLYIESYGCQMNFSDSEIVASILGQEGFNTTSRLEEADLILVNTCSIREKAEQTVRKRL 83

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
                LK    K    + V V GC+A+    + L    IV++VVGP  Y  LP L+    
Sbjct: 84  VHFNGLK----KSNPGVKVGVLGCMAERLKSQFLEEEKIVDMVVGPDAYKDLPNLVREVD 139

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G+  V+   S E+ +  +S V  G     GVTAF++I  GCD  CTFCVVP+TRG E S
Sbjct: 140 SGQNAVNVILSKEETYADVSPVRLG---SNGVTAFVSITRGCDNMCTFCVVPFTRGRERS 196

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNA--WRGKGL--DGEKCT---------FSDLL 251
           R    ++ E   L  NG  E+TLLGQNV++  W G GL  D +K +         F+ LL
Sbjct: 197 RDPQSILREVGDLWANGYKEVTLLGQNVDSYLWYGGGLKKDFDKASPMQQATAVNFAGLL 256

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
              +     +R R++TS+P+DM+  +I+     D +  Y+HLPVQSGSDRILK+MNR HT
Sbjct: 257 EMAATAYPGMRFRFSTSNPQDMTLDVIETMARFDNICNYIHLPVQSGSDRILKAMNRLHT 316

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
             EY  +ID IR + PD  IS D I GFP ET++D + T+ L+D + Y   F F YS R 
Sbjct: 317 REEYFGLIDNIRRLIPDCGISQDMIAGFPTETEEDHQQTLSLMDYVKYDFGFMFAYSERP 376

Query: 372 GTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLV 429
           GT  +  M + V + VK  RL  +  K +   +  N A +G++ EVLIE   ++     +
Sbjct: 377 GTLAARKMADDVPDAVKKRRLREIIDKQQAHSLERNQAHIGRVEEVLIEGPSRKSDAHWM 436

Query: 430 GRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYG 465
           GR+     VV   +N+ +G+ + VRI D   +TL G
Sbjct: 437 GRNTQNTVVVFPKENYRVGEFVNVRIEDCTSATLLG 472


>gi|241761438|ref|ZP_04759526.1| RNA modification enzyme, MiaB family [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|241374345|gb|EER63842.1| RNA modification enzyme, MiaB family [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
          Length = 428

 Score =  443 bits (1139), Expect = e-122,   Method: Composition-based stats.
 Identities = 230/433 (53%), Positives = 312/433 (72%), Gaps = 13/433 (3%)

Query: 36  MNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRI 95
           MN YD  RM ++  SQG +       ADL+VLNTCHIREKAAEKVYS +GR+R       
Sbjct: 1   MNSYDGERMSELLESQGMKAAEEAATADLVVLNTCHIREKAAEKVYSEIGRLRR------ 54

Query: 96  KEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYS 155
            +G   ++ +AGCVAQAEG E+L R+ +V++VVGPQ Y+ LPEL+E+A  GK VVD D  
Sbjct: 55  PDGSSPMIALAGCVAQAEGAEVLARTKMVDIVVGPQAYHHLPELIEKAASGK-VVDIDMP 113

Query: 156 VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEAR 215
           +E KF+ L        R+ G +AFLT+QEGCDKFCT+CVVPYTRG E+SR  S++V EA 
Sbjct: 114 LESKFDALP-----ERRQVGASAFLTVQEGCDKFCTYCVVPYTRGAEVSRPWSRIVKEAH 168

Query: 216 KLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSD 275
            L+D G  EITLLGQNVNAW G+   G       L+ +L++I GL R+RYTTSHP DM++
Sbjct: 169 ALVDKGAREITLLGQNVNAWTGEDEAGRSQGLDGLIRALAKIDGLERIRYTTSHPNDMTE 228

Query: 276 CLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDF 335
            LI+AHG++D LMP+LHLPVQSGS+RILK+MNR HTA  Y  +++R++ VRPDIA+S DF
Sbjct: 229 GLIEAHGEIDKLMPFLHLPVQSGSNRILKAMNRAHTAESYLTLMNRLKEVRPDIALSGDF 288

Query: 336 IVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQ 395
           IVGFPGE+++DF+AT+DL+ ++GY+ AFSF YSPR GTP ++M  Q+D  +  ERL  LQ
Sbjct: 289 IVGFPGESEEDFQATLDLISEVGYSLAFSFAYSPRPGTPAADMDNQIDPEISRERLQRLQ 348

Query: 396 KKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRI 455
             L +QQ  FN   +G+   VLIE+ GK+  +++G+SPWLQSV++ +    IGD+++V +
Sbjct: 349 ALLNQQQFDFNQQTIGRKATVLIERKGKKADQMIGKSPWLQSVIIEA-PVAIGDLVEVTL 407

Query: 456 TDVKISTLYGELV 468
           TD   +++ G+ +
Sbjct: 408 TDAGPNSVKGQFL 420


>gi|302542068|ref|ZP_07294410.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302459686|gb|EFL22779.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Streptomyces
           himastatinicus ATCC 53653]
          Length = 496

 Score =  442 bits (1138), Expect = e-122,   Method: Composition-based stats.
 Identities = 175/452 (38%), Positives = 257/452 (56%), Gaps = 21/452 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNS---MDDADLIVLNTCHIREKAAEKVY 81
           + + V++YGCQMNV+DS R+  +    GY R        +AD++V NTC +RE A  ++Y
Sbjct: 4   KTYEVRTYGCQMNVHDSERLSGLLEGAGYVRAPEGTGEGEADIVVFNTCAVRENADNRLY 63

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR+  +K  R      + + V GC+AQ + + I++++P V+VV G      LP LLE
Sbjct: 64  GNLGRLAPVKARR----PGMQIAVGGCLAQKDRDTIVKKAPWVDVVFGTHNIGSLPVLLE 119

Query: 142 RARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           RAR  +   V+   S+E     L        R+    A+++I  GC+  CTFC+VP  RG
Sbjct: 120 RARVQEEAQVEIAESLEAFPSTLPT-----RRESAYAAWVSISVGCNNTCTFCIVPALRG 174

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E  R    ++ E   L+  GV EITLLGQNVNA  G  + G++  FS LL +   ++GL
Sbjct: 175 KEKDRRPGDILAEVEALVAEGVTEITLLGQNVNA-YGSDI-GDREAFSKLLRACGNVEGL 232

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+T+ HPRD +D +I A  + + +MP LH+P+QSGSD +LK+M R +    Y  II+
Sbjct: 233 ERVRFTSPHPRDFTDDVIAAMAETENVMPQLHMPLQSGSDTVLKAMRRSYRQERYLGIIE 292

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R+  PD AIS+D IVGFPGETD+DF  T+ +V +  +AQAF+F+YS R GTP + M  
Sbjct: 293 KVRAAMPDAAISTDIIVGFPGETDEDFEQTLHVVREARFAQAFTFQYSKRPGTPAAEMDG 352

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKG---KLVGRSPWLQ 436
           Q+ + V  ER   L     E     N   VG+ +EVL+ E  G++     +L GR+P  +
Sbjct: 353 QLPKAVVQERYERLVALQEEISWEENKKQVGRTLEVLVAEGEGRKDDATRRLSGRAPDNR 412

Query: 437 SVVL--NSKNHNIGDIIKVRITDVKISTLYGE 466
            V      +    GD++ V IT      L  E
Sbjct: 413 LVHFTRPDEPVRPGDVVTVDITYAAPHHLLAE 444


>gi|253316429|ref|ZP_04839642.1| hypothetical protein SauraC_09846 [Staphylococcus aureus subsp.
           aureus str. CF-Marseille]
          Length = 514

 Score =  442 bits (1138), Expect = e-122,   Method: Composition-based stats.
 Identities = 171/448 (38%), Positives = 266/448 (59%), Gaps = 15/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + F +K+YGCQMN +D+  +  +  + GY+    ++ AD+I++NTC IRE A  KV+S +
Sbjct: 68  RTFLIKTYGCQMNAHDTEVIAGILEALGYQATTDINTADVILINTCAIRENAENKVFSEI 127

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G +++LK    KE  D+L+ V GC++Q E    +IL+    V+++ G    + LPE+LE 
Sbjct: 128 GNLKHLK----KERPDILIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHHLPEILEE 183

Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           A   K +V   +S E D  E L  V     R+  + A++ I  GCDKFCT+C+VP+TRG 
Sbjct: 184 AYLSKAMVVEVWSKEGDVIENLPKV-----REGNIKAWVNIMYGCDKFCTYCIVPFTRGK 238

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR    ++DE R+L   G  EITLLGQNVN+  GK L   +    DLL ++S+I  + 
Sbjct: 239 ERSRRPEDIIDEVRELAREGYKEITLLGQNVNS-YGKDLQDREYDLGDLLQAISKI-AIP 296

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHP D +D +I    +   ++P++HLPVQSG++ +LK M R++T   Y  ++ R
Sbjct: 297 RVRFTTSHPWDFTDHMIDVISEGGNIVPHIHLPVQSGNNAVLKIMGRKYTRESYLDLVKR 356

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I+   P++A+++D IVG+P E+++ F  T+ L D++G+  A+++ YS R GTP + M + 
Sbjct: 357 IKDRIPNVALTTDIIVGYPNESEEQFEETLTLYDEVGFEHAYTYLYSQRDGTPAAKMKDN 416

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440
           V  NVK ERL  L KK+            GQ + VL E   K+  + L G +   + V  
Sbjct: 417 VPLNVKKERLQRLNKKVGHYSQIAMSKYEGQTVTVLCEGSSKKDDQVLAGYTDKNKLVNF 476

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
            +    IG +++VRI + K  +L G  V
Sbjct: 477 KAPKEMIGKLVEVRIDEAKQYSLNGSFV 504


>gi|302522287|ref|ZP_07274629.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Streptomyces sp. SPB78]
 gi|302431182|gb|EFL02998.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Streptomyces sp. SPB78]
          Length = 506

 Score =  442 bits (1138), Expect = e-122,   Method: Composition-based stats.
 Identities = 170/452 (37%), Positives = 254/452 (56%), Gaps = 21/452 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDD---ADLIVLNTCHIREKAAEKVY 81
           + + +++YGCQMNV+DS R+  +    GY R     +   AD++V NTC +RE A  ++Y
Sbjct: 12  RTYEIRTYGCQMNVHDSERLAGLLEGAGYVRAPEGAEDGGADVVVFNTCAVRENADNRLY 71

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR+   K  R      + + V GC+AQ + + I+ R+P V+VV G     +LP LLE
Sbjct: 72  GNLGRLAPKKTER----PGMQIAVGGCLAQKDRQTIVDRAPWVDVVFGTHNIGKLPVLLE 127

Query: 142 RARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           RAR  +   V+   S+E     L        R+    A++++  GC+  CTFC+VP  RG
Sbjct: 128 RARVQEEAQVEIAESLEAFPSTLPT-----RRESAYAAWVSVSVGCNNTCTFCIVPALRG 182

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E  R    ++ E   L+  GV EITLLGQNVNA  G  + G++  FS LL +   I+GL
Sbjct: 183 KEKDRRPGDILAEVEALVAEGVSEITLLGQNVNA-YGSDI-GDREAFSKLLRACGGIEGL 240

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+T+ HPRD +D +I A  +   +MP LH+P+QSGSD +L++M R +    Y  II+
Sbjct: 241 ERVRFTSPHPRDFTDDVIAAMAETPNVMPQLHMPLQSGSDSVLRAMRRSYRQDRYLGIIE 300

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R+  PD AIS+D IVGFPGET++DF  T+ +V +  +A AF+F+YS R GTP + M  
Sbjct: 301 KVRAAIPDAAISTDIIVGFPGETEEDFEQTLHVVREARFAAAFTFQYSKRPGTPAAEMEN 360

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKG---KLVGRSPWLQ 436
           Q+ + V  +R   L     E     N   VG+ ++V++ E  G++ G   +L GR+P  +
Sbjct: 361 QIPKEVVQKRYERLVALQEEISWEENKKQVGRTLDVMVAEGEGRKDGATQRLSGRAPDNR 420

Query: 437 SVVL--NSKNHNIGDIIKVRITDVKISTLYGE 466
            V           GD++ V IT      L  E
Sbjct: 421 LVHFTKPQDPVRPGDVVTVDITYAAPHHLLAE 452


>gi|303232055|ref|ZP_07318758.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Veillonella atypica
           ACS-049-V-Sch6]
 gi|302513161|gb|EFL55200.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Veillonella atypica
           ACS-049-V-Sch6]
          Length = 438

 Score =  442 bits (1138), Expect = e-122,   Method: Composition-based stats.
 Identities = 156/446 (34%), Positives = 248/446 (55%), Gaps = 15/446 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + +++ +YGCQMN  DS R+     + GY   + ++ ADLI+LNTC +RE A  KV+  +
Sbjct: 2   KSYYIYTYGCQMNTADSERLSHQLETVGYIPTDDVELADLILLNTCAVRETAETKVFGRI 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA- 143
           G ++ LK        +L++ + GC+AQ    E+ +R+P +++V+G      + E++    
Sbjct: 62  GELKRLKQK----NKNLIIAITGCMAQKNQAEMFKRAPHIDIVLGTHNIQHINEMIAEVQ 117

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           R  K  ++ D       +   + +          A++ I  GC+KFCT+C+VP+ RG EI
Sbjct: 118 RTHKHQINVDM------DNTVLPELQAKPNGTFFAWVPIMNGCNKFCTYCIVPHVRGREI 171

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR +  +V E  +L   G  EITLLGQNVN++     DG    F  L+ +L  I G+ R+
Sbjct: 172 SRPVEAIVKEVTELGAKGFKEITLLGQNVNSYGLDFKDG--TDFGTLVDALDHIPGIERI 229

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           RY TSHP+DM+  +I A G    ++ +LHLP+QSGSDRILK MNR +T   Y++++   R
Sbjct: 230 RYMTSHPQDMTKSMIDALGRSSNIVTHLHLPIQSGSDRILKKMNRHYTVEHYKELLSYCR 289

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
               ++ +++D IVGFPGET++DF  T+ L+  + Y  A++F YS R GTP + M EQV 
Sbjct: 290 EKIKNVVVTTDIIVGFPGETEEDFEQTLQLLKDVRYDMAYTFIYSKRSGTPAATMDEQVP 349

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLNS 442
           E VK  RL  L     E  +  N    G++ ++++E    K++    GR+   + V+   
Sbjct: 350 EEVKRVRLQQLMDIQNEISLELNKTMEGKVFDIIVEGPSAKDETMWFGRTSGNKMVLFPK 409

Query: 443 KNHN-IGDIIKVRITDVKISTLYGEL 467
            +   IGD +   I   +    YG +
Sbjct: 410 DDELTIGDTVPAYIDKAQTWVCYGTI 435


>gi|51892897|ref|YP_075588.1| 2-methylthioadenine synthetase [Symbiobacterium thermophilum IAM
           14863]
 gi|81388796|sp|Q67NJ9|MIAB_SYMTH RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|51856586|dbj|BAD40744.1| 2-methylthioadenine synthetase [Symbiobacterium thermophilum IAM
           14863]
          Length = 470

 Score =  442 bits (1138), Expect = e-122,   Method: Composition-based stats.
 Identities = 171/452 (37%), Positives = 255/452 (56%), Gaps = 18/452 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R  ++++GCQMN +DS  M  +    GY +    DDADL++ NTC +RE A E  +  +G
Sbjct: 21  RVHIETFGCQMNEHDSEIMYGILAQMGYVKAQGPDDADLLLFNTCAVRESAVEHAFGRIG 80

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +++ LK        DL++ V GCV Q EG  E I R  P ++++ G    +RLPEL+ERA
Sbjct: 81  QLKPLK----YTNPDLIIGVCGCVPQVEGQVERIKRMFPYLDLIFGTHNIHRLPELVERA 136

Query: 144 RFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           R  +  VVD   S+ D F  +        R+  + A++TI  GCDK CT+C+VP TRG E
Sbjct: 137 RSERETVVDVWESMGDDFPDILPA----AREGDLKAWVTIMYGCDKHCTYCIVPTTRGKE 192

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC----TFSDLLYSLSE-I 257
            SR    ++ E ++L   G  EITLLGQNVNA  GK L G        F DL+  +    
Sbjct: 193 RSRPYEVILAEVQELARQGFKEITLLGQNVNA-YGKDLYGRHGEGAFDFGDLIELIDRNS 251

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
            G+ R+R+TT+HP+D +  +++     + +  + HLPVQSGSD +L+ M R +   +Y +
Sbjct: 252 PGIERIRFTTNHPKDFTRKMVEQIARAEKVCEWFHLPVQSGSDSVLRRMKRSYNRKQYLR 311

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
           ++  IR + PD  I++D IVGFPGET+++F+ T+ LV+++ Y  AF F YS R GTP + 
Sbjct: 312 LVGWIRELIPDAVITTDIIVGFPGETEEEFQETLSLVEEVQYDAAFMFMYSERAGTPAAQ 371

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQ 436
           M +++    K ERL  L +       + N+A VG++ ++L+E   K +   + G +    
Sbjct: 372 MEDRLSVPEKKERLQRLMEVQNRIARAKNEARVGKVYDILVEGLDKGKPDVVFGWTRGNI 431

Query: 437 SVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            V         G I+ VRIT     TL GELV
Sbjct: 432 LVTFPGDESLRGRIVPVRITRAGTWTLEGELV 463


>gi|239636980|ref|ZP_04677974.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus warneri
           L37603]
 gi|239597330|gb|EEQ79833.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus warneri
           L37603]
          Length = 514

 Score =  442 bits (1138), Expect = e-122,   Method: Composition-based stats.
 Identities = 171/448 (38%), Positives = 264/448 (58%), Gaps = 15/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + F +K+YGCQMN +D+  M  +  + GY     ++ AD+I++NTC IRE A  KV+S +
Sbjct: 68  RTFLIKTYGCQMNAHDTEVMAGILEALGYSATTDINTADVILINTCAIRENAENKVFSEI 127

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G +++LK    KE  D L+ V GC++Q E    +IL+    V+++ G    +RLPE+LE 
Sbjct: 128 GNLKHLK----KERPDCLIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHRLPEILEE 183

Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           A   K +V   +S E D  E L  V  G+     + A++ I  GCDKFCT+C+VP+TRG 
Sbjct: 184 AYLSKAMVVEVWSKEGDVIENLPKVRDGH-----IKAWVNIMYGCDKFCTYCIVPFTRGK 238

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR    ++DE R+L   G  EITLLGQNVN+  GK ++G      DLL  +S+I  + 
Sbjct: 239 ERSRRPEDIIDEVRELAREGYQEITLLGQNVNS-YGKDIEGLDYGLGDLLEDISKID-IP 296

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHP D +D +I+   +   ++P++HLPVQSG++ +LK M R++T   Y  ++ R
Sbjct: 297 RVRFTTSHPWDFTDRMIEVIANGGNIVPHIHLPVQSGNNAVLKIMGRKYTRESYLDLVSR 356

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I+   P+IA+++D IVG+P ET++ F  T+ L D++G+  A+++ YS R GTP + M + 
Sbjct: 357 IKEAIPNIALTTDIIVGYPNETEEQFEDTLTLYDEVGFEHAYTYLYSQRDGTPAAKMKDN 416

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVL 440
           V   VK ERL  L KK+ E           +I+ VL E    K+   L G +   + V  
Sbjct: 417 VPTEVKKERLQRLNKKVGEYSQKAMSQYENEIVTVLCEGSSKKDDSVLAGYTSKNKLVNF 476

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
            +    +G ++ V+I + K  +L G  +
Sbjct: 477 KAPKEMVGKLVDVKIDEAKQYSLNGTFI 504


>gi|225849364|ref|YP_002729528.1| (dimethylallyl)adenosine tRNA methylthiotransferase
           [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225643388|gb|ACN98438.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Sulfurihydrogenibium
           azorense Az-Fu1]
          Length = 437

 Score =  442 bits (1138), Expect = e-122,   Method: Composition-based stats.
 Identities = 167/442 (37%), Positives = 270/442 (61%), Gaps = 10/442 (2%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +++++++GCQMNV DS +M  +  + GYE      +AD+I++NTC +REK  +KV S LG
Sbjct: 2   KYYIRTFGCQMNVNDSEKMAGILKTLGYEPAQDWKEADVILVNTCSVREKPDQKVLSALG 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
             + +K    K+  + ++ V GC+AQ  G EIL+++P +++V G    + LP+LLE A+ 
Sbjct: 62  EFKKIK----KDKPNAIIGVCGCLAQRAGYEILQKAPFIDMVFGTTNIHHLPQLLEEAKS 117

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G + V+    +++    L        R+   TAF+T+  GCDK CT+C+VP TRG E SR
Sbjct: 118 GNKAVEILEEIDENENLLD--QFPTVRENKYTAFVTVIRGCDKKCTYCIVPTTRGKERSR 175

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            +  ++ E + L+++GV EI L+GQNV A+   G D     F +LL +++ + G+ R+R+
Sbjct: 176 RIGDILREVQFLVEDGVKEIHLIGQNVTAY---GKDLGDVKFWELLQAVASVPGVERIRF 232

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
           TT HPRD+ +  IK   DL  +   LHLP+Q+GSD++L++M+R +T  EY Q ID ++  
Sbjct: 233 TTGHPRDLDEDTIKVMADLPQVCEALHLPIQAGSDKVLQAMDRGYTQKEYLQKIDLLKKY 292

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            PDIA+S+D IVGFPGET +D+  T+ ++ ++ Y Q F+FKYSPR GTP +++       
Sbjct: 293 IPDIALSTDIIVGFPGETYEDYLETVKVIKEVEYDQVFAFKYSPRPGTPAADIPMTESPE 352

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445
             ++ L  L    ++     N +  G+ +EVLIE+  +E GKL GR+   + V ++    
Sbjct: 353 TISKWLNDLINIQKDITFKKNLSYEGKTVEVLIEEVNEE-GKLTGRTRTNKLVHVDGPQE 411

Query: 446 NIGDIIKVRITDVKISTLYGEL 467
            +G I+ V+I  V   +L G +
Sbjct: 412 YVGYIVNVKIEKVNRFSLEGRI 433


>gi|166367538|ref|YP_001659811.1| tRNA-i(6)A37 modification enzyme [Microcystis aeruginosa NIES-843]
 gi|229890619|sp|B0JVM6|MIAB_MICAN RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|166089911|dbj|BAG04619.1| tRNA-i(6)A37 modification enzyme [Microcystis aeruginosa NIES-843]
          Length = 446

 Score =  442 bits (1138), Expect = e-122,   Method: Composition-based stats.
 Identities = 178/452 (39%), Positives = 268/452 (59%), Gaps = 19/452 (4%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+R+ + ++GCQMN  DS RM  +    G++     ++ADLI+ NTC IR+ A +KVYS+
Sbjct: 5   PRRYHITTFGCQMNKADSERMAGILEDLGFQWSEDANEADLILYNTCTIRDNAEQKVYSY 64

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR    K        DL ++VAGCVAQ EGE++LRR P V++++GPQ   RL +LL++ 
Sbjct: 65  LGRQAKRKQ----TQPDLTLIVAGCVAQQEGEQLLRRVPEVDLIIGPQHANRLGDLLQQV 120

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             G +VV T+     +            R   +TA++ +  GC++ CT+CVVP  RG+E 
Sbjct: 121 FDGSQVVATEPIHIMEDITKP------RRDSNITAWVNVIYGCNERCTYCVVPGVRGVEQ 174

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG------EKCTFSDLLYSLSEI 257
           SR+ + +  E  +L   G  EITLLGQN++A  G+ L G          F+DLLY + ++
Sbjct: 175 SRTPAAIRAEMAQLGQQGYQEITLLGQNIDA-YGRDLPGVTASGRHLHNFTDLLYYVHDV 233

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
            G+ RLR+ TSHPR  ++ LIKA  +L  +  + H+P QSG + ILK+M R +T  +YRQ
Sbjct: 234 AGIERLRFATSHPRYFTERLIKACQELPKVCEHFHIPFQSGDNDILKAMKRGYTQEKYRQ 293

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
           II  IR + PD AIS+D IVGFPGET+  F  T+ LVD+IG+ Q  +  YSPR GTP + 
Sbjct: 294 IIANIRDLMPDAAISADAIVGFPGETEAQFENTLKLVDEIGFDQLNTAAYSPRPGTPAAI 353

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQ 436
             +Q+ E VK++RL  L   +  +    +   +G+I E+L+E    K+  +++GR+   +
Sbjct: 354 WDDQLSEQVKSDRLQRLNHLVATKAAERSQRYLGRIEEILVEDVNPKDASQVMGRTRGNR 413

Query: 437 SVVLNSK-NHNIGDIIKVRITDVKISTLYGEL 467
                       G  +KV+IT+V+  +L G +
Sbjct: 414 LTFFTGDIEELRGKFVKVKITEVRPFSLTGVI 445


>gi|282916552|ref|ZP_06324310.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           subsp. aureus D139]
 gi|283770356|ref|ZP_06343248.1| 2-alkenal reductase [Staphylococcus aureus subsp. aureus H19]
 gi|282319039|gb|EFB49391.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           subsp. aureus D139]
 gi|283460503|gb|EFC07593.1| 2-alkenal reductase [Staphylococcus aureus subsp. aureus H19]
          Length = 514

 Score =  442 bits (1138), Expect = e-122,   Method: Composition-based stats.
 Identities = 170/448 (37%), Positives = 267/448 (59%), Gaps = 15/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + F +K+YGCQMN +D+  +  +  + GY+  + ++ AD+I++NTC IRE A  KV+S +
Sbjct: 68  RTFLIKTYGCQMNAHDTEVIAGILEALGYQATSDINTADVILINTCAIRENAENKVFSEI 127

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G +++LK    KE  D+L+ V GC++Q E    +IL+    V+++ G    + LPE+LE 
Sbjct: 128 GNLKHLK----KERPDILIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHHLPEILEE 183

Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           A   K +V   +S E D  E L  V     R+  + A++ I  GCDKFCT+C+VP+TRG 
Sbjct: 184 AYLSKAMVVEVWSKEGDVIENLPKV-----REGNIKAWVNIMYGCDKFCTYCIVPFTRGK 238

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR    ++DE R+L   G  EITLLGQNVN+  GK L   +    DLL ++S+I  + 
Sbjct: 239 ERSRRPEDIIDEVRELAREGYKEITLLGQNVNS-YGKDLQDIEYDLGDLLQAISKI-AIP 296

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHP D +D +I    +   ++P++HLPVQSG++ +LK M R++T   Y  ++ R
Sbjct: 297 RVRFTTSHPWDFTDHMIDVISEGGNIVPHIHLPVQSGNNAVLKIMGRKYTRESYLDLVKR 356

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I+   P++A+++D IVG+P E+++ F  T+ L D++G+  A+++ YS R GTP + M + 
Sbjct: 357 IKDRIPNVALTTDIIVGYPNESEEQFEETLTLYDEVGFEHAYTYLYSQRDGTPAAKMKDN 416

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440
           V  +VK ERL  L KK+            GQ + VL E   K+  + L G +   + V  
Sbjct: 417 VPLDVKKERLQRLNKKVGHYSQIAMSKYEGQTVTVLCEGSSKKDDQVLAGYTDKNKLVNF 476

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
            +    IG +++VRI + K  +L G  V
Sbjct: 477 KAPKEMIGKLVEVRIDEAKQYSLNGSFV 504


>gi|313157989|gb|EFR57395.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Alistipes sp. HGB5]
          Length = 445

 Score =  442 bits (1138), Expect = e-122,   Method: Composition-based stats.
 Identities = 162/450 (36%), Positives = 260/450 (57%), Gaps = 14/450 (3%)

Query: 21  CIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKV 80
               ++ FV++YGCQMNV D+  +  +   +GY     +D+AD+I++NTC IR+ A +++
Sbjct: 5   SGAGRKLFVETYGCQMNVGDTEIVVSVMQREGYVYTERIDEADVILINTCSIRDNAEQRI 64

Query: 81  YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140
           +  L  ++  + +       L+V V GC+A+   E+++     V+VV GP  Y  LP L+
Sbjct: 65  WGRLAEMKRYRRA----NPGLVVGVIGCMAERLKEKLVEGPHGVDVVAGPDVYRDLPRLV 120

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
             A  G + V+   S E+ +  ++ V      + GV+AF+ I  GC+ FC++CVVPYTRG
Sbjct: 121 REAEAGGKGVNVLLSTEETYAEIAPVRLD---RNGVSAFVAIMRGCNNFCSYCVVPYTRG 177

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E SR    ++ E R L  NG  E+TLLGQNVN++R   +D     F  L+  ++ +  L
Sbjct: 178 RERSRDPETILAEVRTLFGNGYREVTLLGQNVNSYRFGEVD-----FPGLMRRVASVSPL 232

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
           +R+R+ TSHP+D+SD L++   ++  +   +HLP QSG+  +L  MNR++T   Y   + 
Sbjct: 233 LRVRFATSHPKDISDSLLEVMAEMPNICRAIHLPAQSGASSMLARMNRKYTREWYLDRVA 292

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN-ML 379
            IR   PD A+++D I GF GET+++  AT+ L+ ++GY  A+ FKYS R GT     + 
Sbjct: 293 AIRRYLPDCAVTTDLIAGFSGETEEEHAATLSLMREVGYEFAYMFKYSERPGTYAHKHLP 352

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSV 438
           + V E VK+ RL  +     E   + N   VG+  EVL+E   K ++ +L GR+   + V
Sbjct: 353 DDVPEEVKSARLAEIIALQNELSRASNLRDVGREFEVLVEGTSKRDENQLSGRTSQNKVV 412

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           V +   H +GD ++VRIT    +TL+GE +
Sbjct: 413 VFDRGGHGVGDYVRVRITGCTPATLFGEEI 442


>gi|283470508|emb|CAQ49719.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           subsp. aureus ST398]
          Length = 514

 Score =  442 bits (1138), Expect = e-122,   Method: Composition-based stats.
 Identities = 170/448 (37%), Positives = 266/448 (59%), Gaps = 15/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + F +K+YGCQMN +D+  +  +  + GY+    ++ AD+I++NTC IRE A  KV+S +
Sbjct: 68  RTFLIKTYGCQMNAHDTEVIAGILEALGYQATTDINTADVILINTCAIRENAENKVFSEI 127

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G +++LK    KE  D+L+ V GC++Q E    +IL+    V+++ G    + LPE+LE 
Sbjct: 128 GNLKHLK----KERPDILIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHHLPEILEE 183

Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           A   K +V   +S E D  E L  V     R+  + A++ I  GCDKFCT+C+VP+TRG 
Sbjct: 184 AYLSKAMVVEVWSKEGDVIENLPKV-----REGNIKAWVNIMYGCDKFCTYCIVPFTRGK 238

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR    ++DE R+L   G  EITLLGQNVN+  GK L   +    DLL ++S+I  + 
Sbjct: 239 ERSRRPEDIIDEVRELAREGYKEITLLGQNVNS-YGKDLQDIEYDLGDLLQAISKI-AIP 296

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHP D +D +I    +   ++P++HLPVQSG++ +LK M R++T   Y  ++ R
Sbjct: 297 RVRFTTSHPWDFTDHMIDVISEGGNIVPHIHLPVQSGNNAVLKIMGRKYTRESYLDLVKR 356

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I+   P++A+++D IVG+P E+++ F  T+ L D++G+  A+++ YS R GTP + M + 
Sbjct: 357 IKDRIPNVALTTDIIVGYPNESEEQFEETLTLYDEVGFEHAYTYLYSQRDGTPAAKMKDN 416

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440
           V  +VK ERL  L KK+            GQ + VL E   K+  + L G +   + V  
Sbjct: 417 VPLDVKKERLQRLNKKVGHYSQIAMSKYEGQTVTVLCEGSSKKDDQVLAGYTDKNKLVNF 476

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
            +    IG +++VRI + K  +L G  V
Sbjct: 477 KAPKEMIGKLVEVRIDEAKQYSLNGSFV 504


>gi|119510198|ref|ZP_01629336.1| tRNA-i(6)A37 modification enzyme MiaB [Nodularia spumigena CCY9414]
 gi|119465148|gb|EAW46047.1| tRNA-i(6)A37 modification enzyme MiaB [Nodularia spumigena CCY9414]
          Length = 454

 Score =  442 bits (1138), Expect = e-122,   Method: Composition-based stats.
 Identities = 181/454 (39%), Positives = 266/454 (58%), Gaps = 23/454 (5%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + + + ++GCQMN  DS RM  +    G+E     +DADLI+ NTC IR+ A  KVYS+L
Sbjct: 6   RHYHIITFGCQMNKADSERMAGILEDMGFEWSEDPNDADLILYNTCTIRDNAEHKVYSYL 65

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR    K         L ++VAGCVAQ EGE +LRR P +++V+GPQ   RL +LL    
Sbjct: 66  GRQAKRKQEE----PGLTLIVAGCVAQQEGEALLRRVPELDLVMGPQHANRLQDLLTSVL 121

Query: 145 FGKRVVDTD--YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            G +VV T+  + +ED  +          R   VTA++ I  GC++ CT+CVVP  RG+E
Sbjct: 122 NGNQVVATESVHIMEDITQP--------RRDSSVTAWVNIIYGCNERCTYCVVPNVRGVE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC------TFSDLLYSLSE 256
            SR+   +  E  +L   G  EITLLGQN++A  G+ L G          F+DLLY + +
Sbjct: 174 QSRTPEAIRAEMEELGRQGYKEITLLGQNIDA-YGRDLPGTTPEGRHLHNFTDLLYYVHD 232

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           I G+ RLR+ TSHPR  ++ LIKA  +L  +  + H+P QSG + +LK+M+R +T  +YR
Sbjct: 233 IPGIERLRFATSHPRYFTERLIKACAELPKVCEHFHIPFQSGDNELLKAMSRGYTHEKYR 292

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
           +IID IR   PD +IS D IVGFPGET+  F  T+ LV+ IG+    +  YSPR GTP +
Sbjct: 293 RIIDTIRRYMPDASISGDAIVGFPGETEAQFENTLKLVEDIGFDLLNTAAYSPRPGTPAA 352

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSPWL 435
               Q+ E VK++RL  L   +  +    +   +G+I +VL+E ++ K+  +++GR+   
Sbjct: 353 LWSNQLSEEVKSDRLQRLNHLVNVKASERSQRYMGRIEDVLVEDQNSKDPTQVMGRTGGN 412

Query: 436 QSVVLNSKNHNI-GDIIKVRITDVKISTLYGELV 468
           +          + G I+KV+IT+V+  +L GE V
Sbjct: 413 RLTFFTGDISQLKGQIVKVKITEVRAFSLTGEPV 446


>gi|260592003|ref|ZP_05857461.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella veroralis
           F0319]
 gi|260536287|gb|EEX18904.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella veroralis
           F0319]
          Length = 450

 Score =  442 bits (1137), Expect = e-122,   Method: Composition-based stats.
 Identities = 159/450 (35%), Positives = 269/450 (59%), Gaps = 15/450 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ ++++YGCQMNV DS  +  +    GY+  ++ D+AD I LNTC +RE A  K+Y  L
Sbjct: 10  KKLYIETYGCQMNVADSEVVASVMKMAGYDVCDNEDEADAIFLNTCSVRENAENKIYHRL 69

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             +    ++  K+G  L++ V GC+A+   +++++     N+V GP +Y  LP+++ +  
Sbjct: 70  DTL----HAEQKKGRKLILGVLGCMAERVRDDLIQNH-FANLVCGPDSYLNLPDMIAQCE 124

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G   +D + S  + +  +     G NR  G   F++I  GC+ FC +C+VP+TRG E S
Sbjct: 125 NGNNALDIELSTTETYRDVIPQRFGGNRVSG---FVSIMRGCNNFCHYCIVPFTRGRERS 181

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC----TFSDLLYSLSEIKGL 260
           R +  ++ E + L D G  E+TLLGQNVN+  G   +G++     +F++LL  +++    
Sbjct: 182 RDVDSILKEVKDLHDKGFKEVTLLGQNVNS-YGLLPNGKRPENGTSFAELLRKVAQSVPD 240

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
           +R+R+TTS+P DM++ +IKA      L  ++H P QSGS+ +L+ MNR++T  +Y + +D
Sbjct: 241 MRVRFTTSNPEDMTEDIIKAVASEPNLCNHIHFPAQSGSNEVLRLMNRKYTREDYLRKVD 300

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN-ML 379
            IR + PD  +++D  +G+  ET+ D++ T+ L+ ++G+  AF FKYS R GT  +  + 
Sbjct: 301 TIRRLIPDCGLTTDIFIGYHNETEADYQETLSLMREVGFDSAFMFKYSERPGTYAAKHLP 360

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSV 438
           + V E+ K  RL  L +   E     N    G+  E+LIE+ GK    +L+GR+P  ++V
Sbjct: 361 DNVSEDEKIRRLNELIRLQTEISAEQNKKDEGKEFEILIERFGKRSREQLMGRTPQNKAV 420

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           V+   NH+IG+ ++VRIT    +TL+GE V
Sbjct: 421 VIARGNHHIGEFVRVRITGSTSATLFGEEV 450


>gi|228471870|ref|ZP_04056641.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Capnocytophaga gingivalis
           ATCC 33624]
 gi|228276800|gb|EEK15503.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Capnocytophaga gingivalis
           ATCC 33624]
          Length = 481

 Score =  442 bits (1137), Expect = e-122,   Method: Composition-based stats.
 Identities = 167/459 (36%), Positives = 258/459 (56%), Gaps = 22/459 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ +++SYGCQMN  DS  +  +    G+     + +ADL+++NTC +REKA + +   L
Sbjct: 24  RKLYIESYGCQMNFSDSEIVASILHKVGFNTTEELHEADLVLINTCSVREKAEQTIRKRL 83

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            +   +K    +    + V V GC+A+    + L    IV++VVGP  Y  LP LL+   
Sbjct: 84  EQFNAVK----RHKPAMKVGVLGCMAERLKHQFLEEEHIVDLVVGPDAYKDLPNLLQEVD 139

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G+  V+   S ++ +  +S +        GVTAF++I  GCD  CTFC+VP+TRG E S
Sbjct: 140 NGRDAVNVLLSRDETYADISPIRLN---SNGVTAFVSITRGCDNMCTFCIVPFTRGRERS 196

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNA--WRGKGL--DGEKCT---------FSDLL 251
           R    ++ E  +L   G  E+TLLGQNV++  W G GL  D EK +         F+ LL
Sbjct: 197 RDPHSIIHEIEELWARGFREVTLLGQNVDSYLWYGGGLKKDFEKASDIQKVTAVNFAKLL 256

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
             ++     +R+R++TS+P+DM+  +I        +  Y+HLPVQSGS+RILK+MNR HT
Sbjct: 257 DMVATQFPKMRIRFSTSNPQDMTLDVIDTMAKHHNICKYIHLPVQSGSNRILKAMNRLHT 316

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
             EY  +ID IR   P+ AIS D I GFP ET++D + T+ L++ + Y   F F YS R 
Sbjct: 317 REEYFALIDGIRERIPECAISQDMITGFPTETEEDHQDTLSLMEYVKYDFGFMFAYSERP 376

Query: 372 GTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LV 429
           GT  +  + + V + VK  RL  +    ++  +    A VG+ +EVLIE + K+  +  +
Sbjct: 377 GTLAARKIADDVPDEVKKRRLTEIIDLQQKHSLLRTQAQVGKTVEVLIEGNSKKSDQEWM 436

Query: 430 GRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           GR+     VV   +++ +GD + V+IT+   +TL GE V
Sbjct: 437 GRNTQNTVVVFPKEHYKVGDFVNVKITNCTSTTLIGEAV 475


>gi|330686356|gb|EGG97959.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
           epidermidis VCU121]
          Length = 514

 Score =  442 bits (1137), Expect = e-122,   Method: Composition-based stats.
 Identities = 171/448 (38%), Positives = 265/448 (59%), Gaps = 15/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + F +K+YGCQMN +D+  M  +  + GY     ++ AD+I++NTC IRE A  KV+S +
Sbjct: 68  RTFLIKTYGCQMNAHDTEVMAGILEALGYSATTDINTADVILINTCAIRENAENKVFSEI 127

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G +++LK    KE  D L+ V GC++Q E    +IL+    V+++ G    +RLPE+LE 
Sbjct: 128 GNLKHLK----KERPDCLIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHRLPEILEE 183

Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           A   K +V   +S E D  E L  V  G+     + A++ I  GCDKFCT+C+VP+TRG 
Sbjct: 184 AYLSKAMVVEVWSKEGDVIENLPKVRDGH-----IKAWVNIMYGCDKFCTYCIVPFTRGK 238

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR    ++DE R+L   G  EITLLGQNVN+  GK ++G      DLL  +S+I  + 
Sbjct: 239 ERSRRPEDIIDEVRELAREGYQEITLLGQNVNS-YGKDIEGLDYGLGDLLEDISKID-IP 296

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHP D +D +I+   +   ++P++HLPVQSG++ +LK M R++T   Y  ++ R
Sbjct: 297 RVRFTTSHPWDFTDRMIEVIANGGNIVPHIHLPVQSGNNAVLKIMGRKYTRESYLDLVSR 356

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I+   P+IA+++D IVG+P ET++ F  T+ L D++G+  A+++ YS R GTP + M + 
Sbjct: 357 IKEAIPNIALTTDIIVGYPNETEEQFEDTLTLYDEVGFEHAYTYLYSQRDGTPAAKMKDN 416

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440
           V  +VK ERL  L KK+ E           +I+ VL E   K+    L G +   + V  
Sbjct: 417 VPTDVKKERLQRLNKKVGEYSQKAMSQYENEIVTVLCEGSSKKDDTVLAGYTSKNKLVNF 476

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
            +    +G ++ V+I + K  +L G  +
Sbjct: 477 KAPKEMVGKLVDVKIDEAKQYSLNGTFI 504


>gi|54025805|ref|YP_120047.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Nocardia
           farcinica IFM 10152]
 gi|81374170|sp|Q5YT08|MIAB_NOCFA RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|54017313|dbj|BAD58683.1| hypothetical protein [Nocardia farcinica IFM 10152]
          Length = 503

 Score =  442 bits (1137), Expect = e-122,   Method: Composition-based stats.
 Identities = 159/454 (35%), Positives = 253/454 (55%), Gaps = 20/454 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + + ++++GCQMNV+DS R+  +    GY +      ADL+V NTC +RE A  K+Y  L
Sbjct: 5   RSYEIRTFGCQMNVHDSERLSGLLEDAGYVKAAPGATADLVVFNTCAVRENADNKLYGTL 64

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           G +  +K  R      + + V GC+AQ + + ++R++P V+VV G      LP LLERAR
Sbjct: 65  GHLAPVKAGR----PGMQIAVGGCLAQKDRDTVVRKAPWVDVVFGTHNIGSLPVLLERAR 120

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
             ++         + F           R+     +++I  GC+  CTFC+VP  RG E+ 
Sbjct: 121 HNEQAQVEILESLEAF----PSTLPAKRESAYAGWVSISVGCNNTCTFCIVPALRGKEVD 176

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT----FSDLLYSLSEIKGL 260
           R    V+ E + L+D GV E+TLLGQNVN++     D ++      F+ LL +   I+GL
Sbjct: 177 RRPGDVLAEVQALVDQGVLEVTLLGQNVNSYGASFADPDEPRDRGAFAKLLRACGGIEGL 236

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+T+ HP + +D +I+A      + P LH+P+QSGSDR+LK+M R +    Y  II+
Sbjct: 237 ERVRFTSPHPAEFTDDVIEAMAQTPNICPQLHMPLQSGSDRVLKAMRRSYRKARYLGIIE 296

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R+  P  AI++D IVGFPGET++DF+ T+D+V +  +  AF+F+YS R GTP + M +
Sbjct: 297 KVRAAMPHAAITTDIIVGFPGETEEDFQETLDVVRQARFTSAFTFQYSKRPGTPAAEMAD 356

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEK---GKLVGRSPWLQ 436
           QV + V  ER   L     E  ++ N   +G  +E+L+ E  GK+     ++ GR+   +
Sbjct: 357 QVPKQVVQERYDRLIALQEEISLAANRELIGTEVELLVAEGSGKKNAATARMSGRARDGR 416

Query: 437 SVVL----NSKNHNIGDIIKVRITDVKISTLYGE 466
            V       ++    GD++ V IT+     L  +
Sbjct: 417 LVHFRPGGTAEPIRPGDLVTVDITEAAPHHLIAD 450


>gi|119960909|ref|YP_947362.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Arthrobacter
           aurescens TC1]
 gi|229890443|sp|A1R550|MIAB_ARTAT RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|119947768|gb|ABM06679.1| tRNA-i(6)A37 thiotransferase [Arthrobacter aurescens TC1]
          Length = 515

 Score =  442 bits (1136), Expect = e-122,   Method: Composition-based stats.
 Identities = 167/475 (35%), Positives = 256/475 (53%), Gaps = 19/475 (4%)

Query: 1   MGLFIKLIGVAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD 60
           M L I     A   S        P+ + V+++GCQMNV+DS RM  +    GY      +
Sbjct: 1   MSLTIPSPIAATTPSAASMTAGEPKTYQVRTFGCQMNVHDSERMAGLLEEAGYVPA-DGE 59

Query: 61  DADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRR 120
            AD++V NTC +RE A  K+Y  LG++R +K +       + + V GC+AQ + E I+++
Sbjct: 60  VADVVVFNTCAVRENADNKLYGNLGQLRQVKEA----NPGMQIAVGGCLAQKDRETIVKK 115

Query: 121 SPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFL 180
           +P V+ V G      LP LL RAR             D F           R      ++
Sbjct: 116 APWVDAVFGTHNVGALPALLNRARHNNEAQLEILESLDVFPSTLPT----KRDSVYAGWV 171

Query: 181 TIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL 240
           +I  GC+  CTFC+VP  RG E  R   +++ E + L+D+G  E+TLLGQNVN++  +  
Sbjct: 172 SISVGCNNTCTFCIVPSLRGKEKDRRPGEILAEIQALVDDGAVEVTLLGQNVNSYGVEF- 230

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300
            G++  FS LL +  EI+GL R+R+T+ HP   +D +I A  +    MP LH+P+QSGSD
Sbjct: 231 -GDRQAFSKLLRACGEIEGLERVRFTSPHPAAFTDDVIDAMAETHNAMPQLHMPLQSGSD 289

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
           ++LK M R + + ++  I+D++R   P  AI++D IVGFPGET++DF+AT+D+V+K  +A
Sbjct: 290 KVLKDMRRSYRSSKFLGILDKVRDRIPHAAITTDIIVGFPGETEEDFQATLDVVEKSRFA 349

Query: 361 QAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
            AF+F+YS R GTP +++ EQ+ + V  ER   L           N   +G+ +EVL+  
Sbjct: 350 SAFTFQYSKRPGTPAADLPEQLPKAVVQERYERLTALQDRIAAEENAKQLGRKVEVLVTA 409

Query: 421 HGKEKG----KLVGRSPWLQSVVLN----SKNHNIGDIIKVRITDVKISTLYGEL 467
               K     +L GRS   + V  +    ++    GD + V IT+     L  + 
Sbjct: 410 QSGRKAGETHRLSGRSKDQRLVHFSVPAGAEAPRPGDFVTVTITEAAAFHLVADP 464


>gi|94264310|ref|ZP_01288103.1| tRNA-i(6)A37 modification enzyme MiaB [delta proteobacterium
           MLMS-1]
 gi|93455276|gb|EAT05486.1| tRNA-i(6)A37 modification enzyme MiaB [delta proteobacterium
           MLMS-1]
          Length = 446

 Score =  442 bits (1136), Expect = e-122,   Method: Composition-based stats.
 Identities = 176/443 (39%), Positives = 260/443 (58%), Gaps = 6/443 (1%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
            +++++GCQMN  DS  M  +     Y   +  ++AD IV+NTC IR KAA+K YS LG 
Sbjct: 5   LYIETFGCQMNERDSEIMVQLLAHDSYLETSRPEEADCIVVNTCSIRGKAAQKAYSLLGG 64

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
            ++LK         L++ V GCVAQ +G+ +LR+ P +++VVGPQ  YRLPE L  A   
Sbjct: 65  YKSLKERH----PHLVIAVTGCVAQQDGQALLRKMPHLDLVVGPQNIYRLPE-LVAAARQ 119

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           +        +   FE    +            F+TI +GC+ FCT+CVVP+TRG EISR 
Sbjct: 120 QAARQVATELSPAFEIPPFLPAIDPAAVNPRRFVTIMQGCNNFCTYCVVPHTRGREISRK 179

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
              +V E R L  +GV E+TLLGQNVN++       EK  F  LL  + E+ G+ R+R+T
Sbjct: 180 PEDIVAEVRHLAAHGVREVTLLGQNVNSYGLDRPAAEKLPFPALLGKVVEVAGIDRVRFT 239

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
           TSHP+D+S+ L+ A   LD L P+ HLPVQSGSDR+L  MNR+++   Y   +  +R   
Sbjct: 240 TSHPKDLSEELMAAFARLDKLCPHFHLPVQSGSDRVLARMNRKYSRESYLAKVAALRQHC 299

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           P+IAI++D IVGFPGE++ DF  TM+L++++ Y  AFSFKYS R     +   ++V E +
Sbjct: 300 PEIAITTDIIVGFPGESEADFEQTMELLEQVRYDSAFSFKYSDRPNAAAARFADKVPEEL 359

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK-NH 445
           K+ERL  LQ +  E         VG+ +EV++E   K++G+  GR+   + V   S+ + 
Sbjct: 360 KSERLSRLQARQDEISAEIRRTLVGRTVEVMVEGRSKKQGQWSGRTRENRIVNFPSEHDL 419

Query: 446 NIGDIIKVRITDVKISTLYGELV 468
             G ++ V + +    +L G +V
Sbjct: 420 QPGQLLPVHLKETCRHSLRGVIV 442


>gi|49483455|ref|YP_040679.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus
           aureus subsp. aureus MRSA252]
 gi|253731911|ref|ZP_04866076.1| 2-methylthioadenine synthetase [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|257425346|ref|ZP_05601771.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           subsp. aureus 55/2053]
 gi|257428007|ref|ZP_05604405.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257430640|ref|ZP_05607022.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257433400|ref|ZP_05609758.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           subsp. aureus E1410]
 gi|257436242|ref|ZP_05612289.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           subsp. aureus M876]
 gi|258423867|ref|ZP_05686752.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           A9635]
 gi|282903847|ref|ZP_06311735.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           subsp. aureus C160]
 gi|282905610|ref|ZP_06313465.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           subsp. aureus Btn1260]
 gi|282908586|ref|ZP_06316416.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           subsp. aureus WW2703/97]
 gi|282910864|ref|ZP_06318667.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           subsp. aureus WBG10049]
 gi|282914069|ref|ZP_06321856.1| tRNA-I(6)A37 modification enzyme MiaB [Staphylococcus aureus subsp.
           aureus M899]
 gi|282918991|ref|ZP_06326726.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           subsp. aureus C427]
 gi|282924114|ref|ZP_06331790.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           subsp. aureus C101]
 gi|283958035|ref|ZP_06375486.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           subsp. aureus A017934/97]
 gi|293501101|ref|ZP_06666952.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           subsp. aureus 58-424]
 gi|293510063|ref|ZP_06668771.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           subsp. aureus M809]
 gi|293526649|ref|ZP_06671334.1| tRNA-I(6)A37 modification enzyme MiaB [Staphylococcus aureus subsp.
           aureus M1015]
 gi|295427779|ref|ZP_06820411.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           subsp. aureus EMRSA16]
 gi|297591263|ref|ZP_06949901.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           subsp. aureus MN8]
 gi|81651243|sp|Q6GHE3|MIAB_STAAR RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|49241584|emb|CAG40270.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|253724321|gb|EES93050.1| 2-methylthioadenine synthetase [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|257271803|gb|EEV03941.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           subsp. aureus 55/2053]
 gi|257274848|gb|EEV06335.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257278768|gb|EEV09387.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257281493|gb|EEV11630.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           subsp. aureus E1410]
 gi|257284524|gb|EEV14644.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           subsp. aureus M876]
 gi|257845896|gb|EEV69925.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           A9635]
 gi|282314086|gb|EFB44478.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           subsp. aureus C101]
 gi|282316801|gb|EFB47175.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           subsp. aureus C427]
 gi|282322137|gb|EFB52461.1| tRNA-I(6)A37 modification enzyme MiaB [Staphylococcus aureus subsp.
           aureus M899]
 gi|282325469|gb|EFB55778.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           subsp. aureus WBG10049]
 gi|282327648|gb|EFB57931.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           subsp. aureus WW2703/97]
 gi|282330902|gb|EFB60416.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           subsp. aureus Btn1260]
 gi|282595465|gb|EFC00429.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           subsp. aureus C160]
 gi|283790184|gb|EFC29001.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           subsp. aureus A017934/97]
 gi|290920721|gb|EFD97784.1| tRNA-I(6)A37 modification enzyme MiaB [Staphylococcus aureus subsp.
           aureus M1015]
 gi|291096106|gb|EFE26367.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           subsp. aureus 58-424]
 gi|291467007|gb|EFF09525.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           subsp. aureus M809]
 gi|295128137|gb|EFG57771.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           subsp. aureus EMRSA16]
 gi|297576149|gb|EFH94865.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           subsp. aureus MN8]
 gi|298694584|gb|ADI97806.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           ED133]
 gi|302332898|gb|ADL23091.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus
           aureus subsp. aureus JKD6159]
 gi|312438327|gb|ADQ77398.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           subsp. aureus TCH60]
 gi|315194179|gb|EFU24572.1| hypothetical protein CGSSa00_05748 [Staphylococcus aureus subsp.
           aureus CGS00]
 gi|323441074|gb|EGA98781.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus
           aureus O11]
          Length = 514

 Score =  442 bits (1136), Expect = e-122,   Method: Composition-based stats.
 Identities = 170/448 (37%), Positives = 266/448 (59%), Gaps = 15/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + F +K+YGCQMN +D+  +  +  + GY+    ++ AD+I++NTC IRE A  KV+S +
Sbjct: 68  RTFLIKTYGCQMNAHDTEVIAGILEALGYQATTDINTADVILINTCAIRENAENKVFSEI 127

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G +++LK    KE  D+L+ V GC++Q E    +IL+    V+++ G    + LPE+LE 
Sbjct: 128 GNLKHLK----KERPDILIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHHLPEILEE 183

Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           A   K +V   +S E D  E L  V     R+  + A++ I  GCDKFCT+C+VP+TRG 
Sbjct: 184 AYLSKAMVVEVWSKEGDVIENLPKV-----REGNIKAWVNIMYGCDKFCTYCIVPFTRGK 238

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR    ++DE R+L   G  EITLLGQNVN+  GK L   +    DLL ++S+I  + 
Sbjct: 239 ERSRRPEDIIDEVRELAREGYKEITLLGQNVNS-YGKDLQDIEYDLGDLLQAISKI-AIP 296

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHP D +D +I    +   ++P++HLPVQSG++ +LK M R++T   Y  ++ R
Sbjct: 297 RVRFTTSHPWDFTDHMIDVISEGGNIVPHIHLPVQSGNNAVLKIMGRKYTRESYLDLVKR 356

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I+   P++A+++D IVG+P E+++ F  T+ L D++G+  A+++ YS R GTP + M + 
Sbjct: 357 IKDRIPNVALTTDIIVGYPNESEEQFEETLTLYDEVGFEHAYTYLYSQRDGTPAAKMKDN 416

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440
           V  +VK ERL  L KK+            GQ + VL E   K+  + L G +   + V  
Sbjct: 417 VPLDVKKERLQRLNKKVGHYSQIAMSKYEGQTVTVLCEGSSKKDDQVLAGYTDKNKLVNF 476

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
            +    IG +++VRI + K  +L G  V
Sbjct: 477 KAPKEMIGKLVEVRIDEAKQYSLNGSFV 504


>gi|213964685|ref|ZP_03392885.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Corynebacterium
           amycolatum SK46]
 gi|213952878|gb|EEB64260.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Corynebacterium
           amycolatum SK46]
          Length = 515

 Score =  442 bits (1136), Expect = e-122,   Method: Composition-based stats.
 Identities = 160/470 (34%), Positives = 258/470 (54%), Gaps = 25/470 (5%)

Query: 14  VSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIR 73
            S    Q   P+ + V+++GCQMNV+DS R+  +    GY      ++ DL+V NTC +R
Sbjct: 4   PSLNSQQQSSPRTYEVRTFGCQMNVHDSERLSGLLEENGYVAAAEGENPDLVVFNTCAVR 63

Query: 74  EKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTY 133
           E A  ++Y  LG+++ +K++       + + V GC+AQ + + +++++P V+VV G    
Sbjct: 64  ENADNRLYGTLGQLKPVKDAH----PGMQIAVGGCLAQKDKDVVVKKAPWVDVVFGTHNL 119

Query: 134 YRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC 193
             LP LLERA    R         ++F  +        R+     +++I  GC+  CTFC
Sbjct: 120 GSLPALLERAAHNDRAEVEIKDALEEFPSVLPA----KRESTYAGWVSISVGCNNTCTFC 175

Query: 194 VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE----KCTFSD 249
           +VP  RG E  R   +++ E + L++ GV ++TLLGQNVNA+     D +    +  FS 
Sbjct: 176 IVPSLRGKERDRRPGEILAEVQALVEQGVTDVTLLGQNVNAYGVNFADPDMERDRSAFSK 235

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
           LL +  +I+GL R+R+T+ HP + +D +I A  +   ++  LH+P+QSGSDR+LK M R 
Sbjct: 236 LLRACGQIEGLERVRFTSPHPAEFTDDVIDAMAETPNVVHQLHMPLQSGSDRVLKDMRRS 295

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369
           +   ++  I+D++R   PD AI++D IVGFPGET++DF+AT+D+V+K  ++ AF+F+YSP
Sbjct: 296 YRTKKFLGILDKVREKMPDAAITTDIIVGFPGETEEDFQATLDVVEKARFSSAFTFQYSP 355

Query: 370 RLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG--- 426
           R GTP + M +QV   V  ER   L           N   VG+ +E+L+ +    K    
Sbjct: 356 RPGTPAATMPDQVPPEVVKERYGRLLALQERISEEENAKLVGREVELLVSQSDGRKNAET 415

Query: 427 -KLVGRSPWLQSVVLNSKNH---------NIGDIIKVRITDVKISTLYGE 466
            ++ GRS   + V  +               GD + VR+TD     L  +
Sbjct: 416 HRMSGRSRDGRLVHFSPSESEPGVVDRKIRPGDYVTVRVTDSAPHFLIAD 465


>gi|254411897|ref|ZP_05025673.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Microcoleus
           chthonoplastes PCC 7420]
 gi|196181619|gb|EDX76607.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Microcoleus
           chthonoplastes PCC 7420]
          Length = 451

 Score =  442 bits (1136), Expect = e-122,   Method: Composition-based stats.
 Identities = 180/459 (39%), Positives = 273/459 (59%), Gaps = 23/459 (5%)

Query: 21  CIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKV 80
              P+R+ + ++GCQMN  DS RM  +    G+E     +DA LI+ NTC IR+ A +KV
Sbjct: 2   TTSPRRYHITTFGCQMNKADSERMAGILEDMGFEWSEDPNDASLILYNTCTIRDNAEQKV 61

Query: 81  YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140
           YS+LGR    K  +     DL ++VAGCVAQ EGE +LRR P +++V+GPQ   RL +LL
Sbjct: 62  YSYLGRQAKRKQEQA----DLTLIVAGCVAQQEGEALLRRVPELDLVMGPQHANRLKDLL 117

Query: 141 ERARFGKRVVDTD--YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
           E+   G ++V T+  + VED  +          R   VTA++ +  GC++ CT+CVVP  
Sbjct: 118 EQVGDGNQIVATEPIHIVEDITKP--------RRDSTVTAWVNVIYGCNERCTYCVVPNV 169

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG------EKCTFSDLLY 252
           RG+E SR+   +  E  +L   G  EITLLGQN++A  G+ L G       + T +DLLY
Sbjct: 170 RGVEQSRTPEAIRAEMAELGQQGYKEITLLGQNIDA-YGRDLPGVTESGRHQHTLTDLLY 228

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
            + ++  + R+R+ TSHPR  ++ LI+A  +L  +  + H+P QSG + ILK+M R +T 
Sbjct: 229 YVHDVPSIERIRFATSHPRYFTERLIRACKELPKVCEHFHIPFQSGDNDILKAMARGYTQ 288

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
            +YR+IID IR   PD +IS+D IVGFPGET+  F  T+ LV+ I + Q  +  YSPR G
Sbjct: 289 EKYRRIIDTIRDYMPDASISADAIVGFPGETEAQFENTLKLVEDIEFDQLNTAAYSPRPG 348

Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGR 431
           TP +    Q+ E VK++RL  L   +  +  + +    G+I EVL+E ++ K+  +++GR
Sbjct: 349 TPAALWENQLSEEVKSDRLQRLNHLVSIKAAARSQRYFGRIEEVLVEDQNPKDSSQVMGR 408

Query: 432 SPWLQSVVLNSK-NHNIGDIIKVRITDVKISTLYGELVV 469
           +   +    +   N   G ++KV+IT+V+  +L GE + 
Sbjct: 409 TRGNRLTFFSGDINQLKGQLVKVKITEVRAFSLTGEALT 447


>gi|329733662|gb|EGG69990.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           subsp. aureus 21193]
          Length = 514

 Score =  442 bits (1136), Expect = e-122,   Method: Composition-based stats.
 Identities = 170/448 (37%), Positives = 266/448 (59%), Gaps = 15/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + F +K+YGCQMN +D+  +  +  + GY+    ++ AD+I++NTC IRE A  KV+S +
Sbjct: 68  RTFLIKTYGCQMNAHDTEVIAGILKALGYQATTDINTADVILINTCAIRENAENKVFSEI 127

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G +++LK    KE  D+L+ V GC++Q E    +IL+    V+++ G    + LPE+LE 
Sbjct: 128 GNLKHLK----KERPDILIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHHLPEILEE 183

Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           A   K +V   +S E D  E L  V     R+  + A++ I  GCDKFCT+C+VP+TRG 
Sbjct: 184 AYLSKAMVVEVWSKEGDVIENLPKV-----REGNIKAWVNIMYGCDKFCTYCIVPFTRGK 238

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR    ++DE R+L   G  EITLLGQNVN+  GK L   +    DLL ++S+I  + 
Sbjct: 239 ERSRRPEDIIDEVRELAREGYKEITLLGQNVNS-YGKDLQDIEYDLGDLLQAISKI-AIP 296

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHP D +D +I    +   ++P++HLPVQSG++ +LK M R++T   Y  ++ R
Sbjct: 297 RVRFTTSHPWDFTDHMIDVISEGGNIVPHIHLPVQSGNNAVLKIMGRKYTRESYLDLVKR 356

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I+   P++A+++D IVG+P E+++ F  T+ L D++G+  A+++ YS R GTP + M + 
Sbjct: 357 IKDRIPNVALTTDIIVGYPNESEEQFEETLTLYDEVGFEHAYTYLYSQRDGTPAAKMKDN 416

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440
           V  +VK ERL  L KK+            GQ + VL E   K+  + L G +   + V  
Sbjct: 417 VPLDVKKERLQRLNKKVGHYSQIAMSKYEGQTVTVLCEGSSKKDDQVLAGYTDKNKLVNF 476

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
            +    IG +++VRI + K  +L G  V
Sbjct: 477 KAPKEMIGKLVEVRIDEAKQYSLNGSFV 504


>gi|333029498|ref|ZP_08457559.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Bacteroides coprosuis DSM 18011]
 gi|332740095|gb|EGJ70577.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Bacteroides coprosuis DSM 18011]
          Length = 459

 Score =  442 bits (1136), Expect = e-122,   Method: Composition-based stats.
 Identities = 162/450 (36%), Positives = 257/450 (57%), Gaps = 10/450 (2%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           I  ++  +++YGCQMNV DS  +  +    GYE    +++AD + LNTC IRE A  K+Y
Sbjct: 16  IAEKKLLIETYGCQMNVADSEVVASVMKMAGYEITEDLEEADAVFLNTCSIRENAELKIY 75

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             L    ++K  + K    L++ V GC+A+   + ++      N+VVGP  Y  LP+L+ 
Sbjct: 76  KRLDYFYSMKRRKKK---GLIIGVLGCMAERVKQSLIEEH-HANLVVGPDAYLSLPDLIA 131

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
               G++ +D + S  + ++ +            ++ F++I  GC+ FCT+C+VPYTRG 
Sbjct: 132 SVEAGEKAIDIELSTTETYKDIIPSRLCGT---AISGFVSIMRGCNNFCTYCIVPYTRGR 188

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGL 260
           E SR +  +++E   LI  G  EITLLGQNVN++     + GE   F  LL  ++     
Sbjct: 189 ERSREVESILNEVDDLIKKGYKEITLLGQNVNSYHFINKETGEDIQFHHLLEIVATHAPS 248

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R++TSHP+DMSD  ++       +  ++HLPVQSGS RILK MNR++T   Y   I+
Sbjct: 249 TRIRFSTSHPKDMSDDTLRVIAKTPNICKHIHLPVQSGSSRILKLMNRKYTREWYLDRIE 308

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN-ML 379
            I+ + P+  I++D   GF  ET++D + ++ L+++  +  AF FKYS R GT  S  + 
Sbjct: 309 AIKRIIPNCGITTDIFCGFHSETEEDHQMSLSLMEQCQFDYAFMFKYSERPGTYASKNLP 368

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRSPWLQSV 438
           + V E +K  RL  + +   +  ++ N A +GQ  EVL+E   K+ K +L GRS   + V
Sbjct: 369 DDVPEEIKTRRLNEIIELQSKLSLASNKADIGQTYEVLVEGVSKKSKDQLFGRSQQNKVV 428

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           + + KNH IGD ++VRI +V  +TL G  +
Sbjct: 429 IFDRKNHRIGDYVQVRIDEVSSATLIGTEI 458


>gi|297208061|ref|ZP_06924492.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           subsp. aureus ATCC 51811]
 gi|296887304|gb|EFH26206.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           subsp. aureus ATCC 51811]
          Length = 514

 Score =  442 bits (1136), Expect = e-122,   Method: Composition-based stats.
 Identities = 171/448 (38%), Positives = 266/448 (59%), Gaps = 15/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + F +K+YGCQMN +D+  +  +  + GY+    ++ AD+I++NTC IRE A  KV+S +
Sbjct: 68  RTFLIKTYGCQMNAHDTEVIAGILEALGYQATTDINTADVILINTCAIRENAENKVFSEI 127

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G +++LK    KE  D+L+ V GC++Q E    +IL+    V+++ G    + LPE+LE 
Sbjct: 128 GNLKHLK----KERPDILIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHHLPEILEE 183

Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           A   K +V   +S E D  E L  V     R+  + A++ I  GCDKFCT+C+VP+TRG 
Sbjct: 184 AYLSKAMVVEVWSKEGDVIENLPKV-----REGNIKAWVNIMYGCDKFCTYCIVPFTRGK 238

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR    ++DE R+L   G  EITLLGQNVN+  GK L   +    DLL ++S+I  + 
Sbjct: 239 ERSRRPEDIIDEVRELAREGYKEITLLGQNVNS-YGKDLQDIEYDLGDLLQAISKI-AIP 296

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHP D +D +I    +   ++P++HLPVQSG++ +LK M R++T   Y  ++ R
Sbjct: 297 RVRFTTSHPWDFTDHMIDVISEGGNIVPHIHLPVQSGNNAVLKIMGRKYTRESYLDLVKR 356

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I+   P++A+++D IVG+P E+++ F  T+ L D++G+  A+++ YS R GTP + M + 
Sbjct: 357 IKDRIPNVALTTDIIVGYPNESEEQFEETLTLYDEVGFEHAYTYLYSQRDGTPAAKMKDN 416

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440
           V  NVK ERL  L KK+            GQ + VL E   K+  + L G +   + V  
Sbjct: 417 VPLNVKKERLQRLNKKVGHYSQIAMSKYEGQTVTVLCEGSSKKDDQVLAGYTDKNKLVNF 476

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
            +    IG +++VRI + K  +L G  V
Sbjct: 477 KAPKEMIGKLVEVRIDEAKQYSLNGSFV 504


>gi|303228532|ref|ZP_07315360.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Veillonella atypica
           ACS-134-V-Col7a]
 gi|302516779|gb|EFL58693.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Veillonella atypica
           ACS-134-V-Col7a]
          Length = 438

 Score =  442 bits (1136), Expect = e-122,   Method: Composition-based stats.
 Identities = 156/446 (34%), Positives = 247/446 (55%), Gaps = 15/446 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + +++ +YGCQMN  DS R+       GY   + ++ ADLI+LNTC +RE A  KV+  +
Sbjct: 2   KSYYIYTYGCQMNTADSERLSHQLEIVGYIPTDDVESADLILLNTCAVRETAETKVFGRI 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA- 143
           G ++ LK        +L++ + GC+AQ    E+ +R+P +++V+G      + E++    
Sbjct: 62  GELKRLKQK----NKNLIIAITGCMAQKNQAEMFKRAPHIDIVLGTHNIQHINEMIAEVQ 117

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           R  K  ++ D       +   + +          A++ I  GC+KFCT+C+VP+ RG EI
Sbjct: 118 RTHKHQINVDM------DNTVLPELQAKPNGTFFAWVPIMNGCNKFCTYCIVPHVRGREI 171

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR +  +V E  +L   G  EITLLGQNVN++     DG    F  L+ +L  I G+ R+
Sbjct: 172 SRPVEAIVKEVTELGAKGFKEITLLGQNVNSYGLDFKDG--TDFGTLVDALDHIPGIERI 229

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           RY TSHP+DM+  +I A G    ++ +LHLP+QSGSDRILK MNR +T   Y++++   R
Sbjct: 230 RYMTSHPQDMTKSMIDALGRSSNIVTHLHLPIQSGSDRILKKMNRHYTVEHYKELLSYCR 289

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
               ++ +++D IVGFPGET++DF  T+ L+  + Y  A++F YS R GTP + M EQV 
Sbjct: 290 EKIKNVVVTTDIIVGFPGETEEDFEQTLQLLKDVRYDMAYTFIYSKRSGTPAATMDEQVP 349

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLNS 442
           E VK  RL  L     E  +  N    G++ ++++E    K++    GR+   + V+   
Sbjct: 350 EEVKRVRLQQLMDIQNEISLELNKTMEGKVFDIIVEGPSAKDETMWFGRTSGNKMVLFPK 409

Query: 443 KNHN-IGDIIKVRITDVKISTLYGEL 467
            +   IGD +   I   +    YG +
Sbjct: 410 DDELTIGDTVPAYIDKAQTWVCYGTI 435


>gi|82750892|ref|YP_416633.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus
           aureus RF122]
 gi|123727480|sp|Q2YXS2|MIAB_STAAB RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|82656423|emb|CAI80843.1| conserved hypothetical protein [Staphylococcus aureus RF122]
          Length = 514

 Score =  442 bits (1136), Expect = e-122,   Method: Composition-based stats.
 Identities = 170/448 (37%), Positives = 266/448 (59%), Gaps = 15/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + F +K+YGCQMN +D+  +  +  + GY+    ++ AD+I++NTC IRE A  KV+S +
Sbjct: 68  RTFLIKTYGCQMNAHDTEVIAGILEALGYQATTDINTADVILINTCAIRENAENKVFSEI 127

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G +++LK    KE  D+L+ V GC++Q E    +IL+    V+++ G    + LPE+LE 
Sbjct: 128 GNLKHLK----KERPDILIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHHLPEILEE 183

Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           A   K +V   +S E D  E L  V     R+  + A++ I  GCDKFCT+C+VP+TRG 
Sbjct: 184 AYLSKAMVVEVWSKEGDVIENLPKV-----REGNIKAWVNIMYGCDKFCTYCIVPFTRGK 238

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR    ++DE R+L   G  EITLLGQNVN+  GK L   +    DLL ++S+I  + 
Sbjct: 239 ERSRRPEDIIDEVRELAREGYKEITLLGQNVNS-YGKDLQDIEYDLGDLLQAISKI-AIP 296

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHP D +D +I    +   ++P++HLPVQSG++ +LK M R++T   Y  ++ R
Sbjct: 297 RVRFTTSHPWDFTDHMIDVISEGGNIVPHIHLPVQSGNNAVLKIMGRKYTRESYLDLVKR 356

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I+   P++A+++D IVG+P E+++ F  T+ L D++G+  A+++ YS R GTP + M + 
Sbjct: 357 IKDRIPNVALTTDIIVGYPNESEEQFEETLTLYDEVGFEHAYTYLYSQRDGTPAAKMKDN 416

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440
           V  +VK ERL  L KK+            GQ + VL E   K+  + L G +   + V  
Sbjct: 417 VPLDVKKERLQRLNKKVGHYSQIAMSKYEGQTVTVLCEGSSKKDDQVLAGYTDKNKLVNF 476

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
            +    IG +++VRI + K  +L G  V
Sbjct: 477 KAPKEMIGKLVEVRIDEAKQYSLNGSFV 504


>gi|218780253|ref|YP_002431571.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Desulfatibacillum
           alkenivorans AK-01]
 gi|218761637|gb|ACL04103.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Desulfatibacillum
           alkenivorans AK-01]
          Length = 461

 Score =  442 bits (1136), Expect = e-122,   Method: Composition-based stats.
 Identities = 180/451 (39%), Positives = 265/451 (58%), Gaps = 13/451 (2%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + P++ ++K+ GCQMNVYDS  M  +    GYE      DAD ++LNTC IR KA +KV+
Sbjct: 1   MKPKKLYIKTMGCQMNVYDSEAMARVLAPMGYELTAHKKDADCLLLNTCAIRAKAEQKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S+LGR+  LK +      DLL+ V GCVAQ E +++  R+P V+ V GP    RLPE++ 
Sbjct: 61  SYLGRLTGLKGN----NPDLLIGVGGCVAQQEAKKVFDRAPHVDFVFGPHAINRLPEIVA 116

Query: 142 RARFGKRVVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           +A  GKR V     + D FE +    +D     + GV+AF+TI  GCD +CT+CVVP+ R
Sbjct: 117 QAEQGKRHVAATEFL-DFFEEIKQPHLDKAGPEESGVSAFVTIMSGCDNYCTYCVVPHVR 175

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G E+SR    ++ E   L   GV EITLLGQNVN++  K   G   +F+ LL  + E +G
Sbjct: 176 GREMSRDSQAILAEVESLAAKGVKEITLLGQNVNSYGNKEGFG---SFAGLLRLVHEAEG 232

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           + R+R+TTSHP+D+S  LI+A  +L  L  ++HLPVQSGS+RILK MNR +T  +Y   +
Sbjct: 233 VERIRFTTSHPKDLSQELIQAFAELPKLCKHIHLPVQSGSNRILKKMNRGYTREDYLGKV 292

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
             +R   P+I +++D I GFP ET++DF+ TMDL+ +  Y   F+F YS R   P     
Sbjct: 293 RALREACPEIRLTTDIIAGFPSETEEDFQDTMDLIRRADYDSLFAFMYSDRPSAPAVKFP 352

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSV 438
           +++ E VK+ RL  + K   E   + + A VG   +VL+E    +   +  GR+    +V
Sbjct: 353 DKLSEEVKSRRLAQVLKVSEEITRAKHAAMVGSKQQVLVEGRSVQNPEQWRGRTGGHVTV 412

Query: 439 VL--NSKNHNIGDIIKVRITDVKISTLYGEL 467
                +    +G  + V I +   ++L G+L
Sbjct: 413 NFLAPASGDLVGKQVDVLIENGYSNSLSGKL 443


>gi|222151135|ref|YP_002560289.1| tRNA-i(6)A37 modification enzyme MiaB [Macrococcus caseolyticus
           JCSC5402]
 gi|222120258|dbj|BAH17593.1| tRNA-i(6)A37 modification enzyme MiaB [Macrococcus caseolyticus
           JCSC5402]
          Length = 509

 Score =  442 bits (1136), Expect = e-122,   Method: Composition-based stats.
 Identities = 164/448 (36%), Positives = 266/448 (59%), Gaps = 15/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++F++++YGCQMN +D+  M  +F +  YE  + ++DAD+I+LNTC IRE A  KV+  +
Sbjct: 65  RKFYIRTYGCQMNEHDTEVMAGIFEALEYEATSDVNDADVILLNTCAIRENAENKVFGEI 124

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G ++++K +      D+L+ V GC++Q E    +IL+    V+++ G    +RLP +L+ 
Sbjct: 125 GNLKHIKQA----KPDVLIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHRLPAILDE 180

Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           A   K +V   +S E D  E L       +R     A++ I  GCDKFCT+C+VP+TRG 
Sbjct: 181 AYMSKAMVVEVWSKEGDVIENLP-----KSRLGDTKAWVNIMYGCDKFCTYCIVPFTRGK 235

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR   +++ E R L   G  EI LLGQNVNA  GK +DG      DLL  + +I  + 
Sbjct: 236 ERSRMPEEIIAEVRDLARRGYKEICLLGQNVNA-YGKDIDGLNYGLGDLLADIQKID-IP 293

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHP D  D LI+       ++P++HLPVQSG++ +LK M R+++   Y +++ +
Sbjct: 294 RVRFTTSHPWDFDDRLIEVIAAGGNIVPHIHLPVQSGNNEVLKIMGRKYSRESYLELVGK 353

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I++  P++A+++D IVG+P ET++ F+ T+ L +++ +  A+++ YSPR GTP + M + 
Sbjct: 354 IKAAMPEVALTTDIIVGYPNETEEQFQETLSLYEEVAFDHAYTYLYSPREGTPAAKMEDN 413

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440
           V    K +RL  L K + +         + Q + VL E   K+  + L G +   + V  
Sbjct: 414 VPMREKKDRLQRLNKLVGDYTERALSHYLDQEVVVLCEGPSKKNDEILAGYTEKNKLVNF 473

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
           N     IG ++KVRIT+ K  ++ GEL+
Sbjct: 474 NGPKEAIGQLVKVRITETKQYSMNGELI 501


>gi|159027937|emb|CAO87100.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 446

 Score =  441 bits (1135), Expect = e-122,   Method: Composition-based stats.
 Identities = 179/450 (39%), Positives = 267/450 (59%), Gaps = 19/450 (4%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+R+ + ++GCQMN  DS RM  +    G++     ++ADLI+ NTC IR+ A +KVYS+
Sbjct: 5   PRRYHITTFGCQMNKADSERMAGILEDLGFQWSEDANEADLILYNTCTIRDNAEQKVYSY 64

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR    K        DL +VVAGCVAQ EGE++LRR P V++++GPQ   RL +LL++ 
Sbjct: 65  LGRQAKRKQ----TQPDLTLVVAGCVAQQEGEQLLRRVPEVDLIIGPQHANRLGDLLQQV 120

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             G +VV T+     +            R   +TA++ +  GC++ CT+CVVP  RG+E 
Sbjct: 121 FDGSQVVATEPIHIMEDITKP------RRDSNITAWVNVIYGCNERCTYCVVPGVRGVEQ 174

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG------EKCTFSDLLYSLSEI 257
           SR+ + +  E  +L   G  EITLLGQN++A  G+ L G          F+DLLY + ++
Sbjct: 175 SRTPAAIRAEMEQLGQQGYQEITLLGQNIDA-YGRDLPGVTASGRHLHNFTDLLYYIHDV 233

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
            G+ RLR+ TSHPR  ++ LIKA  +L  +  + H+P QSG + ILK+M R +T  +YRQ
Sbjct: 234 AGIERLRFATSHPRYFTERLIKACQELPKVCEHFHIPFQSGDNDILKAMKRGYTQEKYRQ 293

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
           II  IR + PD AIS+D IVGFPGET+  F  T+ LVD+IG+ Q  +  YSPR GTP + 
Sbjct: 294 IIANIRDLMPDAAISADAIVGFPGETEAQFENTLKLVDEIGFDQLNTAAYSPRPGTPAAI 353

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQ 436
              Q+ E VK++RL  L   +  +    +   +G+I E+L+E    K+  +++GR+   +
Sbjct: 354 WDNQLSEQVKSDRLQRLNHLVATKAAERSQRYLGRIEEILVEDVNPKDASQVMGRTRGNR 413

Query: 437 SVVLNSKNHNI-GDIIKVRITDVKISTLYG 465
                     + G  +KV+IT+V+  +L G
Sbjct: 414 LTFFTGNIEKLRGTFVKVKITEVRPFSLTG 443


>gi|15924282|ref|NP_371816.1| tRNA 2-methylthioadenosine synthase [Staphylococcus aureus subsp.
           aureus Mu50]
 gi|15926875|ref|NP_374408.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus
           aureus subsp. aureus N315]
 gi|21282904|ref|NP_645992.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus
           aureus subsp. aureus MW2]
 gi|49486131|ref|YP_043352.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus
           aureus subsp. aureus MSSA476]
 gi|148267782|ref|YP_001246725.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus
           aureus subsp. aureus JH9]
 gi|150393841|ref|YP_001316516.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus
           aureus subsp. aureus JH1]
 gi|156979613|ref|YP_001441872.1| hypothetical protein SAHV_1282 [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|253733470|ref|ZP_04867635.1| 2-methylthioadenine synthetase [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|255006079|ref|ZP_05144680.2| hypothetical protein SauraM_06400 [Staphylococcus aureus subsp.
           aureus Mu50-omega]
 gi|257795652|ref|ZP_05644631.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           A9781]
 gi|258421638|ref|ZP_05684562.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           A9719]
 gi|258434794|ref|ZP_05688868.1| tRNA 2-methylthioadenosine synthase [Staphylococcus aureus A9299]
 gi|258444630|ref|ZP_05692959.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           A8115]
 gi|258447537|ref|ZP_05695681.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           A6300]
 gi|258449379|ref|ZP_05697482.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           A6224]
 gi|258454758|ref|ZP_05702722.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           A5937]
 gi|269202909|ref|YP_003282178.1| tRNA-i(6)A37 modification enzyme MiaB [Staphylococcus aureus subsp.
           aureus ED98]
 gi|282892780|ref|ZP_06301015.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           A8117]
 gi|282927634|ref|ZP_06335250.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           A10102]
 gi|295406229|ref|ZP_06816036.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           A8819]
 gi|296274850|ref|ZP_06857357.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus
           aureus subsp. aureus MR1]
 gi|297244457|ref|ZP_06928340.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           A8796]
 gi|300912143|ref|ZP_07129586.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           subsp. aureus TCH70]
 gi|81649395|sp|Q6G9S1|MIAB_STAAS RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|81704466|sp|Q7A110|MIAB_STAAW RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|81705771|sp|Q7A5W3|MIAB_STAAN RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|81781679|sp|Q99UI1|MIAB_STAAM RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|229891002|sp|A7X1T3|MIAB_STAA1 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|229891003|sp|A6U1B1|MIAB_STAA2 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|229891004|sp|A5ISH6|MIAB_STAA9 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|13701092|dbj|BAB42387.1| conserved hypotehtical protein [Staphylococcus aureus subsp. aureus
           N315]
 gi|14247062|dbj|BAB57454.1| similar to tRNA 2-methylthioadenosine synthase [Staphylococcus
           aureus subsp. aureus Mu50]
 gi|21204343|dbj|BAB95040.1| conserved hypotehtical protein [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49244574|emb|CAG43003.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|147740851|gb|ABQ49149.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           subsp. aureus JH9]
 gi|149946293|gb|ABR52229.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           subsp. aureus JH1]
 gi|156721748|dbj|BAF78165.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|253728524|gb|EES97253.1| 2-methylthioadenine synthetase [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|257789624|gb|EEV27964.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           A9781]
 gi|257842324|gb|EEV66749.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           A9719]
 gi|257849155|gb|EEV73137.1| tRNA 2-methylthioadenosine synthase [Staphylococcus aureus A9299]
 gi|257850123|gb|EEV74076.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           A8115]
 gi|257853728|gb|EEV76687.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           A6300]
 gi|257857367|gb|EEV80265.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           A6224]
 gi|257863141|gb|EEV85905.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           A5937]
 gi|262075199|gb|ACY11172.1| tRNA-i(6)A37 modification enzyme MiaB [Staphylococcus aureus subsp.
           aureus ED98]
 gi|282590637|gb|EFB95714.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           A10102]
 gi|282764777|gb|EFC04902.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           A8117]
 gi|285816974|gb|ADC37461.1| tRNA-i(6)A37 methylthiotransferase [Staphylococcus aureus 04-02981]
 gi|294968817|gb|EFG44839.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           A8819]
 gi|297178487|gb|EFH37733.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           A8796]
 gi|300886389|gb|EFK81591.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           subsp. aureus TCH70]
 gi|312829686|emb|CBX34528.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           subsp. aureus ECT-R 2]
 gi|315131086|gb|EFT87070.1| hypothetical protein CGSSa03_06074 [Staphylococcus aureus subsp.
           aureus CGS03]
 gi|329727394|gb|EGG63850.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           subsp. aureus 21172]
          Length = 514

 Score =  441 bits (1135), Expect = e-122,   Method: Composition-based stats.
 Identities = 171/448 (38%), Positives = 266/448 (59%), Gaps = 15/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + F +K+YGCQMN +D+  +  +  + GY+    ++ AD+I++NTC IRE A  KV+S +
Sbjct: 68  RTFLIKTYGCQMNAHDTEVIAGILEALGYQATTDINTADVILINTCAIRENAENKVFSEI 127

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G +++LK    KE  D+L+ V GC++Q E    +IL+    V+++ G    + LPE+LE 
Sbjct: 128 GNLKHLK----KERPDILIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHHLPEILEE 183

Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           A   K +V   +S E D  E L  V     R+  + A++ I  GCDKFCT+C+VP+TRG 
Sbjct: 184 AYLSKAMVVEVWSKEGDVIENLPKV-----REGNIKAWVNIMYGCDKFCTYCIVPFTRGK 238

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR    ++DE R+L   G  EITLLGQNVN+  GK L   +    DLL ++S+I  + 
Sbjct: 239 ERSRRPEDIIDEVRELAREGYKEITLLGQNVNS-YGKDLQDIEYDLGDLLQAISKI-AIP 296

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHP D +D +I    +   ++P++HLPVQSG++ +LK M R++T   Y  ++ R
Sbjct: 297 RVRFTTSHPWDFTDHMIDVISEGGNIVPHIHLPVQSGNNAVLKIMGRKYTRESYLDLVKR 356

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I+   P++A+++D IVG+P E+++ F  T+ L D++G+  A+++ YS R GTP + M + 
Sbjct: 357 IKDRIPNVALTTDIIVGYPNESEEQFEETLTLYDEVGFEHAYTYLYSQRDGTPAAKMKDN 416

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440
           V  NVK ERL  L KK+            GQ + VL E   K+  + L G +   + V  
Sbjct: 417 VPLNVKKERLQRLNKKVGHYSQIAMSKYEGQTVTVLCEGSSKKDDQVLAGYTDKNKLVNF 476

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
            +    IG +++VRI + K  +L G  V
Sbjct: 477 KAPKEMIGKLVEVRIDEAKQYSLNGSFV 504


>gi|189184684|ref|YP_001938469.1| tRNA-methylthiotransferase MiaB protein [Orientia tsutsugamushi
           str. Ikeda]
 gi|229890583|sp|B3CV38|MIAB_ORITI RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|189181455|dbj|BAG41235.1| tRNA-methylthiotransferase MiaB protein [Orientia tsutsugamushi
           str. Ikeda]
          Length = 449

 Score =  441 bits (1135), Expect = e-121,   Method: Composition-based stats.
 Identities = 218/450 (48%), Positives = 308/450 (68%), Gaps = 10/450 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + +  ++K+YGCQMNVYDS RM D+  +QGY  V +M DA +I+LNTCHIREKA+EK+YS
Sbjct: 1   MNKMLYIKTYGCQMNVYDSNRMVDLLETQGYNIVANMADASVIILNTCHIREKASEKMYS 60

Query: 83  FLGRIRNLKNSRIKEGG-DLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
            LGRI+ L+ SR+K G     ++VAGCV QAEGEEI  R P VN++VGPQ+YY LP +LE
Sbjct: 61  ELGRIKKLQQSRLKAGKSKAKIIVAGCVGQAEGEEIFIREPAVNIIVGPQSYYNLPTMLE 120

Query: 142 RARFG--KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           +   G    ++D D+    KF +L  V     +   V+  +++QEGCDKFCTFCVVPYTR
Sbjct: 121 KLDSGTENHLIDLDFVEAAKFNKLPEV----LKSPTVSGLVSVQEGCDKFCTFCVVPYTR 176

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G E SR L QV  E   +   G  E+ L+GQNV+A+ GK  +G++C+ +DL+  +++I  
Sbjct: 177 GAEFSRPLEQVYREVLNIAQQGAKEVVLVGQNVSAYHGKDENGKECSLADLIKYVAKIDK 236

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           + R+RY TSHP DM+D L+  H   + LMP+LHLPVQSGS++ILK MNRRH+   Y +II
Sbjct: 237 IKRIRYITSHPNDMTDQLLSLHATEEKLMPFLHLPVQSGSNKILKLMNRRHSRERYLEII 296

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            ++R +RPDI ISSD IVGFPGE D+DF AT+ L  +  + Q +SFKYS R GTP + + 
Sbjct: 297 QQLRELRPDIVISSDIIVGFPGEDDEDFEATLSLAKEARFGQCYSFKYSQRPGTPAA-VK 355

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV 439
           +Q+ E VK  RL  LQ +L +QQ+  N   +G+++ VL ++ GK  G+++G++P++QSV 
Sbjct: 356 QQISEEVKQHRLSILQAQLMQQQLECNQKLIGKVVPVLFDRDGKYDGQIIGKTPYMQSVC 415

Query: 440 L--NSKNHNIGDIIKVRITDVKISTLYGEL 467
           +     N+  G I+ V+I     S+L+GE+
Sbjct: 416 IMNEKDNNLYGKIVNVKILTASASSLFGEV 445


>gi|83815966|ref|YP_446673.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Salinibacter ruber DSM
           13855]
 gi|83757360|gb|ABC45473.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Salinibacter ruber DSM
           13855]
          Length = 572

 Score =  441 bits (1135), Expect = e-121,   Method: Composition-based stats.
 Identities = 162/453 (35%), Positives = 262/453 (57%), Gaps = 9/453 (1%)

Query: 19  DQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAE 78
           D     ++ ++++YGCQMNV DS  +  +    GY        AD+++LNTC IRE A  
Sbjct: 105 DATAGDKQVYIETYGCQMNVNDSGIVASVLEESGYGLTRDQAAADVVLLNTCAIRENAER 164

Query: 79  KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPE 138
           K+ + L  +R+ K    K  G+L++ V GC+A+   E++L +  +V+VVVGP  Y  LP+
Sbjct: 165 KIRARLSMLRSEKE---KRDGELMLGVLGCMAERLREKLLEQEDLVDVVVGPDAYRDLPQ 221

Query: 139 LLERARF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197
           LL  A   G+  V+ + S ++ +E +  V        GV+A+++I  GCD  CTFCVVP+
Sbjct: 222 LLYEADATGQAAVNVELSKQETYEDIQPVRYD---SNGVSAYVSIMRGCDNMCTFCVVPF 278

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257
           TRG E SR ++ ++ E  +L + G  E+TLLGQNVN++     DG   +F++L+  +S +
Sbjct: 279 TRGREESRPVTTILSEVARLAEEGYKEVTLLGQNVNSYHYTDADGTSVSFAELVDRVSRV 338

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
              +R+RY+TSHP+D +D L+K H D   +  Y+HLPVQ G+  +L  M R +T  EY  
Sbjct: 339 SPEMRVRYSTSHPKDCTDDLLKVHRDRPNVCNYIHLPVQHGNTEVLDRMRRTYTREEYLA 398

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS- 376
           + +R + + P +++S+D I GF GET+     T+ L++++ Y  A+ FKYS R  T  + 
Sbjct: 399 LTERAKELCPGVSLSTDLIAGFCGETEAQHEDTLSLMEEVRYDHAYMFKYSERPQTYAAR 458

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLVGRSPWL 435
              + V E+ K  RL  + +   +     N+A VG++  VL+E   K+   +  GR+   
Sbjct: 459 KYEDDVPEDTKQRRLEEIIELQNQHAKESNEAEVGRVHTVLVEGPSKKSDAQFFGRTDTN 518

Query: 436 QSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           + VV + +++  GD ++VRI D   STL G  +
Sbjct: 519 KGVVFDREDYEKGDYVRVRIEDCTSSTLLGTAI 551


>gi|294508608|ref|YP_003572667.1| 2-methylthioadenine synthetase [Salinibacter ruber M8]
 gi|294344937|emb|CBH25715.1| 2-methylthioadenine synthetase [Salinibacter ruber M8]
          Length = 613

 Score =  441 bits (1135), Expect = e-121,   Method: Composition-based stats.
 Identities = 162/453 (35%), Positives = 262/453 (57%), Gaps = 9/453 (1%)

Query: 19  DQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAE 78
           D     ++ ++++YGCQMNV DS  +  +    GY        AD+++LNTC IRE A  
Sbjct: 146 DATAGDKQVYIETYGCQMNVNDSGIVASVLEESGYGLTRDQAAADVVLLNTCAIRENAER 205

Query: 79  KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPE 138
           K+ + L  +R+ K    K  G+L++ V GC+A+   E++L +  +V+VVVGP  Y  LP+
Sbjct: 206 KIRARLSMLRSEKE---KRDGELMLGVLGCMAERLREKLLEQEDLVDVVVGPDAYRDLPQ 262

Query: 139 LLERARF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197
           LL  A   G+  V+ + S ++ +E +  V        GV+A+++I  GCD  CTFCVVP+
Sbjct: 263 LLYEADATGQAAVNVELSKQETYEDIQPVRYD---SNGVSAYVSIMRGCDNMCTFCVVPF 319

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257
           TRG E SR ++ ++ E  +L + G  E+TLLGQNVN++     DG   +F++L+  +S +
Sbjct: 320 TRGREESRPVTTILSEVARLAEEGYKEVTLLGQNVNSYHYTDADGTSVSFAELVDRVSRV 379

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
              +R+RY+TSHP+D +D L+K H D   +  Y+HLPVQ G+  +L  M R +T  EY  
Sbjct: 380 SPEMRVRYSTSHPKDCTDDLLKVHRDRPNVCNYIHLPVQHGNTEVLDRMRRTYTREEYLA 439

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS- 376
           + +R + + P +++S+D I GF GET+     T+ L++++ Y  A+ FKYS R  T  + 
Sbjct: 440 LTERAKELCPGVSLSTDLIAGFCGETEAQHEDTLSLMEEVRYDHAYMFKYSERPQTYAAR 499

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLVGRSPWL 435
              + V E+ K  RL  + +   +     N+A VG++  VL+E   K+   +  GR+   
Sbjct: 500 KYEDDVPEDTKQRRLEEIIELQNQHAKESNEAEVGRVHTVLVEGPSKKSDAQFFGRTDTN 559

Query: 436 QSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           + VV + +++  GD ++VRI D   STL G  +
Sbjct: 560 KGVVFDREDYEKGDYVRVRIEDCTSSTLLGTAI 592


>gi|320140890|gb|EFW32737.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           subsp. aureus MRSA131]
          Length = 514

 Score =  441 bits (1135), Expect = e-121,   Method: Composition-based stats.
 Identities = 170/448 (37%), Positives = 266/448 (59%), Gaps = 15/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + F +K+YGCQMN +D+  +  +  + GY+    ++ AD+I++NTC IRE A  KV+S +
Sbjct: 68  RTFLIKTYGCQMNAHDTEVIAGILEALGYQATTDINTADVILINTCAIRENAENKVFSEI 127

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G +++LK    KE  D+L+ V GC++Q E    +IL+    V+++ G    + LPE+LE 
Sbjct: 128 GNLKHLK----KERPDILIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHHLPEILEE 183

Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           A   K +V   +S E D  E L  V     R+  + A++ I  GCDKFCT+C+VP+TRG 
Sbjct: 184 AYLSKAMVVEVWSKEGDVIENLPKV-----REGNIKAWVNIMYGCDKFCTYCIVPFTRGK 238

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR    ++DE R+L   G  EITLLGQNVN+  GK L   +    DLL ++S+I  + 
Sbjct: 239 ERSRRPEDIIDEVRELAREGYKEITLLGQNVNS-YGKDLQDIEYDLGDLLQAISKI-AIP 296

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHP D +D +I    +   ++P++HLPVQSG++ +LK M R++T   Y  ++ R
Sbjct: 297 RVRFTTSHPWDFTDHMIDVISEGGNIVPHIHLPVQSGNNAVLKIMGRKYTRESYLDLVKR 356

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I+   P++A+++D IVG+P E+++ F  T+ L D++G+  A+++ YS R GTP + M + 
Sbjct: 357 IKDRIPNVALTTDIIVGYPNESEEQFEETLTLYDEVGFEHAYTYLYSQRDGTPAAKMKDN 416

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440
           V  NVK ERL  L KK+            GQ + VL E   K+  + L G +   + V  
Sbjct: 417 VPLNVKKERLQRLNKKVGHYSQIAMSKYEGQTVTVLCEGSSKKDDQVLSGYTDKNKLVNF 476

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
            +    IG +++VRI + K  +L G  +
Sbjct: 477 KAPKEMIGKLVEVRIDEAKQYSLNGSFI 504


>gi|323718661|gb|EGB27824.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Mycobacterium tuberculosis CDC1551A]
          Length = 518

 Score =  441 bits (1135), Expect = e-121,   Method: Composition-based stats.
 Identities = 169/469 (36%), Positives = 266/469 (56%), Gaps = 20/469 (4%)

Query: 9   GVAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLN 68
           GV    +    +    + + V++YGCQMNV+DS R+  +  + GY R     +AD++V N
Sbjct: 42  GVTGEGAGPPVRRAPARTYQVRTYGCQMNVHDSERLAGLLEAAGYRRATDGSEADVVVFN 101

Query: 69  TCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVV 128
           TC +RE A  ++Y  L  +   K +      D+ + V GC+AQ + + +LRR+P V+VV 
Sbjct: 102 TCAVRENADNRLYGNLSHLAPRKRA----NPDMQIAVGGCLAQKDRDAVLRRAPWVDVVF 157

Query: 129 GPQTYYRLPELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCD 187
           G      LP LLERAR  K   V+   +++     L       +R+    A+++I  GC+
Sbjct: 158 GTHNIGSLPTLLERARHNKVAQVEIAEALQQFPSSLP-----SSRESAYAAWVSISVGCN 212

Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG----E 243
             CTFC+VP  RG E+ RS + ++ E R L+++GV E+TLLGQNVNA+     D      
Sbjct: 213 NSCTFCIVPSLRGREVDRSPADILAEVRSLVNDGVLEVTLLGQNVNAYGVSFADPALPRN 272

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
           +  F++LL +  +I GL R+R+T+ HP + +D +I+A      + P LH+P+QSGSDRIL
Sbjct: 273 RGAFAELLRACGDIDGLERVRFTSPHPAEFTDDVIEAMAQTRNVCPALHMPLQSGSDRIL 332

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           ++M R + A  Y  II+R+R+  P  AI++D IVGFPGET++DF AT+D+V +  +A AF
Sbjct: 333 RAMRRSYRAERYLGIIERVRAAIPHAAITTDLIVGFPGETEEDFAATLDVVRRARFAAAF 392

Query: 364 SFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHG 422
           +F+YS R GTP + +  Q+ + V  ER   L     +  +  N A VGQ +EVL+    G
Sbjct: 393 TFQYSKRPGTPAAQLDGQLPKAVVQERYERLIALQEQISLEANRALVGQAVEVLVATGEG 452

Query: 423 KEK---GKLVGRSPWLQSVVLNS--KNHNIGDIIKVRITDVKISTLYGE 466
           ++     ++ GR+   + V   +       GD+I  ++T+     L  +
Sbjct: 453 RKDTVTARMSGRARDGRLVHFTAGQPRVRPGDVITTKVTEAAPHHLIAD 501


>gi|17228807|ref|NP_485355.1| hypothetical protein alr1312 [Nostoc sp. PCC 7120]
 gi|81772425|sp|Q8YXA3|MIAB_ANASP RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|17130659|dbj|BAB73269.1| alr1312 [Nostoc sp. PCC 7120]
          Length = 454

 Score =  441 bits (1134), Expect = e-121,   Method: Composition-based stats.
 Identities = 182/454 (40%), Positives = 276/454 (60%), Gaps = 23/454 (5%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +R+ + ++GCQMN  DS RM  +    G++     ++ADLI+ NTC IR+ A +KVYS+L
Sbjct: 6   RRYHITTFGCQMNKADSERMAGILEDMGFKFSEDPNNADLILYNTCTIRDNAEQKVYSYL 65

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR    K+ +     DL +VVAGCVAQ EGE +LRR P +++V+GPQ   RL +LLE   
Sbjct: 66  GRQAKRKHEQ----PDLTLVVAGCVAQQEGEALLRRVPELDLVMGPQHANRLKDLLESVF 121

Query: 145 FGKRVVDTD--YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            G +VV T+  + +ED  +          R   VTA++ +  GC++ CT+CVVP  RG+E
Sbjct: 122 AGNQVVATEAVHIMEDITQ--------ARRDSTVTAWVNVIYGCNERCTYCVVPNVRGVE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC------TFSDLLYSLSE 256
            SR+ + V  E  +L   G  EITLLGQN++A  G+ L G         TF+DLLY + +
Sbjct: 174 QSRTPAAVRAEMEELGRQGYKEITLLGQNIDA-YGRDLPGATPEGRHLHTFTDLLYYVHD 232

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           + G+ R+R+ TSHPR  ++ LIKA  +L  +  + H+P QSG +++LK+M R +T  +YR
Sbjct: 233 VPGVERIRFATSHPRYFTERLIKACAELPKVCEHFHIPFQSGDNQLLKAMARGYTQEKYR 292

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
           +IID IR   PD +IS+D IVGFPGET++ F  T+ LVD IG+ Q  +  YSPR GTP +
Sbjct: 293 RIIDTIRRYMPDASISADAIVGFPGETEEQFENTLKLVDDIGFDQLNTAAYSPRPGTPAA 352

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWL 435
               Q+ E VK++RL  L   +  +    +   +G+I EVL+E+   K++ +++GR+   
Sbjct: 353 LWENQLSEEVKSDRLQRLNHLVNVKAAERSQRYMGRIEEVLVEEQNPKDQTQVMGRTGGN 412

Query: 436 QSVVLNSKNHNI-GDIIKVRITDVKISTLYGELV 468
           +        H + G ++ V+I +V+  +L GE +
Sbjct: 413 RLTFFKGDIHELKGQLVMVKINEVRAFSLTGEPI 446


>gi|224476428|ref|YP_002634034.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus
           carnosus subsp. carnosus TM300]
 gi|222421035|emb|CAL27849.1| putative radical SAM superfamily protein [Staphylococcus carnosus
           subsp. carnosus TM300]
          Length = 513

 Score =  441 bits (1134), Expect = e-121,   Method: Composition-based stats.
 Identities = 168/448 (37%), Positives = 262/448 (58%), Gaps = 15/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + FF+K++GCQMN +D+  M  +F + GY     +  AD+I+LNTC IRE A  KV+S +
Sbjct: 67  RTFFIKTFGCQMNAHDTEVMAGIFEALGYTLAEDILKADVILLNTCAIRENAENKVFSEI 126

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G +++LK    ++  D L+ V GC++Q E    +IL+    V+++ G    ++LPE+LE 
Sbjct: 127 GNLKHLK----RDRPDCLIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHKLPEILEE 182

Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           A   K +V   +S E D  E L  V   Y       A++ I  GCDKFCT+C+VP+TRG 
Sbjct: 183 AYMSKAMVIDVWSKEGDVIENLPKVRDDY-----FKAWVNIMYGCDKFCTYCIVPFTRGK 237

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR    ++DE R L   G  EITLLGQNVN+  GK L   +    DL   +S+I  + 
Sbjct: 238 ERSRRPQDIIDEVRDLARQGYQEITLLGQNVNS-YGKDLKDIEYDLGDLFEDISKID-IP 295

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHP D +D +I        ++P++HLPVQSG+D +LK M R++T   Y  +++R
Sbjct: 296 RVRFTTSHPWDFTDHMIDVIAKGGNIVPHIHLPVQSGNDAVLKIMGRKYTRESYLDLVNR 355

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I++  PD+A+++D IVG+P ET++ F+ T+ L D++ +  A+++ YS R GTP + M + 
Sbjct: 356 IKTAIPDVALTTDIIVGYPNETEEQFQETLSLYDEVEFEHAYTYLYSQRDGTPAARMKDN 415

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440
           V++ VK +RL  L +K+            GQ++ VL E   K+  + L G +   + V  
Sbjct: 416 VEKEVKKDRLQRLNQKVGYYSERALKGYEGQVVTVLCEGSSKKDNEVLAGYTDKNKLVNF 475

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 IG ++ V+I + K  +L G  +
Sbjct: 476 RGPKEVIGKLVDVKIDEAKQYSLNGTFL 503


>gi|308371116|ref|ZP_07423861.2| conserved alanine and arginine rich protein [Mycobacterium
           tuberculosis SUMu003]
 gi|308329792|gb|EFP18643.1| conserved alanine and arginine rich protein [Mycobacterium
           tuberculosis SUMu003]
          Length = 500

 Score =  441 bits (1134), Expect = e-121,   Method: Composition-based stats.
 Identities = 169/468 (36%), Positives = 265/468 (56%), Gaps = 20/468 (4%)

Query: 9   GVAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLN 68
           GV    +    +    + + V++YGCQMNV+DS R+  +  + GY R     +AD++V N
Sbjct: 42  GVTGEGAGPPVRRAPARTYQVRTYGCQMNVHDSERLAGLLEAAGYRRATDGSEADVVVFN 101

Query: 69  TCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVV 128
           TC +RE A  ++Y  L  +   K +      D+ + V GC+AQ + + +LRR+P V+VV 
Sbjct: 102 TCAVRENADNRLYGNLSHLAPRKRA----NPDMQIAVGGCLAQKDRDAVLRRAPWVDVVF 157

Query: 129 GPQTYYRLPELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCD 187
           G      LP LLERAR  K   V+   +++     L       +R+    A+++I  GC+
Sbjct: 158 GTHNIGSLPTLLERARHNKVAQVEIAEALQQFPSSLP-----SSRESAYAAWVSISVGCN 212

Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG----E 243
             CTFC+VP  RG E+ RS + ++ E R L+++GV E+TLLGQNVNA+     D      
Sbjct: 213 NSCTFCIVPSLRGREVDRSPADILAEVRSLVNDGVLEVTLLGQNVNAYGVSFADPALPRN 272

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
           +  F++LL +  +I GL R+R+T+ HP + +D +I+A      + P LH+P+QSGSDRIL
Sbjct: 273 RGAFAELLRACGDIDGLERVRFTSPHPAEFTDDVIEAMAQTRNVCPALHMPLQSGSDRIL 332

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           ++M R + A  Y  II+R+R+  P  AI++D IVGFPGET++DF AT+D+V +  +A AF
Sbjct: 333 RAMRRSYRAERYLGIIERVRAAIPHAAITTDLIVGFPGETEEDFAATLDVVRRARFAAAF 392

Query: 364 SFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHG 422
           +F+YS R GTP + +  Q+ + V  ER   L     +  +  N A VGQ +EVL+    G
Sbjct: 393 TFQYSKRPGTPAAQLDGQLPKAVVQERYERLIALQEQISLEANRALVGQAVEVLVATGEG 452

Query: 423 KEK---GKLVGRSPWLQSVVLNS--KNHNIGDIIKVRITDVKISTLYG 465
           ++     ++ GR+   + V   +       GD+I  ++T+     L  
Sbjct: 453 RKDTVTARMSGRARDGRLVHFTAGQPRVRPGDVITTKVTEAAPHHLIA 500


>gi|308373494|ref|ZP_07667593.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Mycobacterium
           tuberculosis SUMu005]
 gi|308375495|ref|ZP_07668037.1| conserved alanine and arginine rich protein [Mycobacterium
           tuberculosis SUMu007]
 gi|308337478|gb|EFP26329.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Mycobacterium
           tuberculosis SUMu005]
 gi|308346063|gb|EFP34914.1| conserved alanine and arginine rich protein [Mycobacterium
           tuberculosis SUMu007]
          Length = 515

 Score =  441 bits (1134), Expect = e-121,   Method: Composition-based stats.
 Identities = 169/469 (36%), Positives = 266/469 (56%), Gaps = 20/469 (4%)

Query: 9   GVAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLN 68
           GV    +    +    + + V++YGCQMNV+DS R+  +  + GY R     +AD++V N
Sbjct: 12  GVTGEGAGPPVRRAPARTYQVRTYGCQMNVHDSERLAGLLEAAGYRRATDGSEADVVVFN 71

Query: 69  TCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVV 128
           TC +RE A  ++Y  L  +   K +      D+ + V GC+AQ + + +LRR+P V+VV 
Sbjct: 72  TCAVRENADNRLYGNLSHLAPRKRA----NPDMQIAVGGCLAQKDRDAVLRRAPWVDVVF 127

Query: 129 GPQTYYRLPELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCD 187
           G      LP LLERAR  K   V+   +++     L       +R+    A+++I  GC+
Sbjct: 128 GTHNIGSLPTLLERARHNKVAQVEIAEALQQFPSSLP-----SSRESAYAAWVSISVGCN 182

Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG----E 243
             CTFC+VP  RG E+ RS + ++ E R L+++GV E+TLLGQNVNA+     D      
Sbjct: 183 NSCTFCIVPSLRGREVDRSPADILAEVRSLVNDGVLEVTLLGQNVNAYGVSFADPALPRN 242

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
           +  F++LL +  +I GL R+R+T+ HP + +D +I+A      + P LH+P+QSGSDRIL
Sbjct: 243 RGAFAELLRACGDIDGLERVRFTSPHPAEFTDDVIEAMAQTRNVCPALHMPLQSGSDRIL 302

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           ++M R + A  Y  II+R+R+  P  AI++D IVGFPGET++DF AT+D+V +  +A AF
Sbjct: 303 RAMRRSYRAERYLGIIERVRAAIPHAAITTDLIVGFPGETEEDFAATLDVVRRARFAAAF 362

Query: 364 SFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHG 422
           +F+YS R GTP + +  Q+ + V  ER   L     +  +  N A VGQ +EVL+    G
Sbjct: 363 TFQYSKRPGTPAAQLDGQLPKAVVQERYERLIALQEQISLEANRALVGQAVEVLVATGEG 422

Query: 423 KEK---GKLVGRSPWLQSVVLNS--KNHNIGDIIKVRITDVKISTLYGE 466
           ++     ++ GR+   + V   +       GD+I  ++T+     L  +
Sbjct: 423 RKDTVTARMSGRARDGRLVHFTAGQPRVRPGDVITTKVTEAAPHHLIAD 471


>gi|15842271|ref|NP_337308.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Mycobacterium
           tuberculosis CDC1551]
 gi|13882563|gb|AAK47122.1| conserved hypothetical protein [Mycobacterium tuberculosis CDC1551]
          Length = 512

 Score =  441 bits (1134), Expect = e-121,   Method: Composition-based stats.
 Identities = 168/469 (35%), Positives = 265/469 (56%), Gaps = 20/469 (4%)

Query: 9   GVAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLN 68
           GV    +    +    + + V++YGCQMNV+DS R+  +  + GY R     +AD++V N
Sbjct: 9   GVTGEGAGPPVRRAPARTYQVRTYGCQMNVHDSERLAGLLEAAGYRRATDGSEADVVVFN 68

Query: 69  TCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVV 128
           TC +RE A  ++Y  L  +   K +      D+ + V GC+AQ + + +L R+P V+VV 
Sbjct: 69  TCAVRENADNRLYGNLSHLAPRKRA----NPDMQIAVGGCLAQKDRDAVLXRAPWVDVVF 124

Query: 129 GPQTYYRLPELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCD 187
           G      LP LLERAR  K   V+   +++     L       +R+    A+++I  GC+
Sbjct: 125 GTHNIGSLPTLLERARHNKVAQVEIAEALQQFPSSLP-----SSRESAYAAWVSISVGCN 179

Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG----E 243
             CTFC+VP  RG E+ RS + ++ E R L+++GV E+TLLGQNVNA+     D      
Sbjct: 180 NSCTFCIVPSLRGREVDRSPADILAEVRSLVNDGVLEVTLLGQNVNAYGVSFADPALPRN 239

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
           +  F++LL +  +I GL R+R+T+ HP + +D +I+A      + P LH+P+QSGSDRIL
Sbjct: 240 RGAFAELLRACGDIDGLERVRFTSPHPAEFTDDVIEAMAQTRNVCPALHMPLQSGSDRIL 299

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           ++M R + A  Y  II+R+R+  P  AI++D IVGFPGET++DF AT+D+V +  +A AF
Sbjct: 300 RAMRRSYRAERYLGIIERVRAAIPHAAITTDLIVGFPGETEEDFAATLDVVRRARFAAAF 359

Query: 364 SFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHG 422
           +F+YS R GTP + +  Q+ + V  ER   L     +  +  N A VGQ +EVL+    G
Sbjct: 360 TFQYSKRPGTPAAQLDGQLPKAVVQERYERLIALQEQISLEANRALVGQAVEVLVATGEG 419

Query: 423 KEK---GKLVGRSPWLQSVVLNS--KNHNIGDIIKVRITDVKISTLYGE 466
           ++     ++ GR+   + V   +       GD+I  ++T+     L  +
Sbjct: 420 RKDTVTARMSGRARDGRLVHFTAGQPRVRPGDVITTKVTEAAPHHLIAD 468


>gi|254551787|ref|ZP_05142234.1| hypothetical alanine, arginine-rich protein [Mycobacterium
           tuberculosis '98-R604 INH-RIF-EM']
          Length = 512

 Score =  441 bits (1134), Expect = e-121,   Method: Composition-based stats.
 Identities = 169/469 (36%), Positives = 267/469 (56%), Gaps = 20/469 (4%)

Query: 9   GVAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLN 68
           GV    +    +  + + + V++YGCQMNV+DS R+  +  + GY R     +AD++V N
Sbjct: 9   GVTGEGAGPPVRRALARTYQVRTYGCQMNVHDSERLAGLLEAAGYRRATDGSEADVVVFN 68

Query: 69  TCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVV 128
           TC +RE A  ++Y  L  +   K +      D+ + V GC+AQ + + +LRR+P V+VV 
Sbjct: 69  TCAVRENADNRLYGNLSHLAPRKRA----NPDMQIAVGGCLAQKDRDAVLRRAPWVDVVF 124

Query: 129 GPQTYYRLPELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCD 187
           G      LP LLERAR  K   V+   +++     L       +R+    A+++I  GC+
Sbjct: 125 GTHNIGSLPTLLERARHNKVAQVEIAEALQQFPSSLP-----SSRESAYAAWVSISVGCN 179

Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG----E 243
             CTFC+VP  RG E+ RS + ++ E R L+++GV E+TLLGQNVNA+     D      
Sbjct: 180 NSCTFCIVPSLRGREVDRSPADILAEVRSLVNDGVLEVTLLGQNVNAYGVSFADPALPRN 239

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
           +  F++LL +  +I GL R+R+T+ HP + +D +I+A      + P LH+P+QSGSDRIL
Sbjct: 240 RGAFAELLRACGDIDGLERVRFTSPHPAEFTDDVIEAMAQTRNVCPALHMPLQSGSDRIL 299

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           ++M R + A  Y  II+R+R+  P  AI++D IVGFPGET++DF AT+D+V +  +A AF
Sbjct: 300 RAMRRSYRAERYLGIIERVRAAIPHAAITTDLIVGFPGETEEDFAATLDVVRRARFAAAF 359

Query: 364 SFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHG 422
           +F+YS R GTP + +  Q+ + V  ER   L     +  +  N A VGQ +EVL+    G
Sbjct: 360 TFQYSKRPGTPAAQLDGQLPKAVVQERYERLIALQEQISLEANRALVGQAVEVLVATGEG 419

Query: 423 KEK---GKLVGRSPWLQSVVLNS--KNHNIGDIIKVRITDVKISTLYGE 466
           ++     ++ GR+   + V   +       GD+I  ++T+     L  +
Sbjct: 420 RKDTVTARMSGRARDGRLVHFTAGQPRVRPGDVITTKVTEAAPHHLIAD 468


>gi|57651862|ref|YP_186168.1| tRNA-i(6)A37 modification enzyme MiaB [Staphylococcus aureus subsp.
           aureus COL]
 gi|87160782|ref|YP_493882.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           subsp. aureus USA300_FPR3757]
 gi|88195002|ref|YP_499802.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus
           aureus subsp. aureus NCTC 8325]
 gi|151221413|ref|YP_001332235.1| tRNA-i(6)A37 modification enzyme MiaB [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|161509458|ref|YP_001575117.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus
           aureus subsp. aureus USA300_TCH1516]
 gi|221142526|ref|ZP_03567019.1| 2-methylthioadenine synthetase [Staphylococcus aureus subsp. aureus
           str. JKD6009]
 gi|258452591|ref|ZP_05700597.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           A5948]
 gi|262048179|ref|ZP_06021066.1| hypothetical protein SAD30_1955 [Staphylococcus aureus D30]
 gi|262051352|ref|ZP_06023575.1| hypothetical protein SA930_2074 [Staphylococcus aureus 930918-3]
 gi|282920536|ref|ZP_06328257.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           A9765]
 gi|284024285|ref|ZP_06378683.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus
           aureus subsp. aureus 132]
 gi|294848288|ref|ZP_06789035.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           A9754]
 gi|304381143|ref|ZP_07363796.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           subsp. aureus ATCC BAA-39]
 gi|81694614|sp|Q5HGD9|MIAB_STAAC RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|123407056|sp|Q2FZ02|MIAB_STAA8 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|123486136|sp|Q2FHE6|MIAB_STAA3 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|229891005|sp|A6QGJ1|MIAB_STAAE RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|229891006|sp|A8Z1W3|MIAB_STAAT RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|57286048|gb|AAW38142.1| tRNA-i(6)A37 modification enzyme MiaB [Staphylococcus aureus subsp.
           aureus COL]
 gi|87126756|gb|ABD21270.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           subsp. aureus USA300_FPR3757]
 gi|87202560|gb|ABD30370.1| tRNA-i(6)A37 modification enzyme MiaB [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|150374213|dbj|BAF67473.1| tRNA-i(6)A37 modification enzyme MiaB [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|160368267|gb|ABX29238.1| 2-methylthioadenine synthetase [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|257859809|gb|EEV82651.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           A5948]
 gi|259160727|gb|EEW45748.1| hypothetical protein SA930_2074 [Staphylococcus aureus 930918-3]
 gi|259163745|gb|EEW48300.1| hypothetical protein SAD30_1955 [Staphylococcus aureus D30]
 gi|282594198|gb|EFB99185.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           A9765]
 gi|294825088|gb|EFG41510.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           A9754]
 gi|302751114|gb|ADL65291.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus
           aureus subsp. aureus str. JKD6008]
 gi|304340126|gb|EFM06067.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           subsp. aureus ATCC BAA-39]
 gi|315198534|gb|EFU28863.1| 2-methylthioadenine synthetase [Staphylococcus aureus subsp. aureus
           CGS01]
 gi|320143843|gb|EFW35615.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           subsp. aureus MRSA177]
 gi|329313962|gb|AEB88375.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Staphylococcus aureus subsp. aureus T0131]
 gi|329727801|gb|EGG64252.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           subsp. aureus 21189]
          Length = 514

 Score =  441 bits (1134), Expect = e-121,   Method: Composition-based stats.
 Identities = 170/448 (37%), Positives = 266/448 (59%), Gaps = 15/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + F +K+YGCQMN +D+  +  +  + GY+    ++ AD+I++NTC IRE A  KV+S +
Sbjct: 68  RTFLIKTYGCQMNAHDTEVIAGILEALGYQATTDINTADVILINTCAIRENAENKVFSEI 127

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G +++LK    KE  D+L+ V GC++Q E    +IL+    V+++ G    + LPE+LE 
Sbjct: 128 GNLKHLK----KERPDILIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHHLPEILEE 183

Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           A   K +V   +S E D  E L  V     R+  + A++ I  GCDKFCT+C+VP+TRG 
Sbjct: 184 AYLSKAMVVEVWSKEGDVIENLPKV-----REGNIKAWVNIMYGCDKFCTYCIVPFTRGK 238

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR    ++DE R+L   G  EITLLGQNVN+  GK L   +    DLL ++S+I  + 
Sbjct: 239 ERSRRPEDIIDEVRELAREGYKEITLLGQNVNS-YGKDLQDIEYDLGDLLQAISKI-AIP 296

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHP D +D +I    +   ++P++HLPVQSG++ +LK M R++T   Y  ++ R
Sbjct: 297 RVRFTTSHPWDFTDHMIDVISEGGNIVPHIHLPVQSGNNAVLKIMGRKYTRESYLDLVKR 356

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I+   P++A+++D IVG+P E+++ F  T+ L D++G+  A+++ YS R GTP + M + 
Sbjct: 357 IKDRIPNVALTTDIIVGYPNESEEQFEETLTLYDEVGFEHAYTYLYSQRDGTPAAKMKDN 416

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440
           V  NVK ERL  L KK+            GQ + VL E   K+  + L G +   + V  
Sbjct: 417 VPLNVKKERLQRLNKKVGHYSQIAMSKYEGQTVTVLCEGSSKKDDQVLAGYTDKNKLVNF 476

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
            +    IG +++VRI + K  +L G  +
Sbjct: 477 KAPKEMIGKLVEVRIDEAKQYSLNGSFI 504


>gi|58584621|ref|YP_198194.1| 2-methylthioadenine synthetase [Wolbachia endosymbiont strain TRS
           of Brugia malayi]
 gi|58418937|gb|AAW70952.1| 2-methylthioadenine synthetase [Wolbachia endosymbiont strain TRS
           of Brugia malayi]
          Length = 448

 Score =  441 bits (1134), Expect = e-121,   Method: Composition-based stats.
 Identities = 230/445 (51%), Positives = 317/445 (71%), Gaps = 11/445 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +  ++K+YGCQMNVYDS+ ME++    G+  VN ++ ADL++LNTCHIREKAAEK+YS L
Sbjct: 8   KSLYIKTYGCQMNVYDSILMENIIKPLGFNVVNDVEKADLVILNTCHIREKAAEKLYSEL 67

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           G+I +      ++  ++ +V AGCVAQAEGEEI RR+P V++VVGPQ+   LPEL+ +A 
Sbjct: 68  GKIHS-----SRKNKEITIVAAGCVAQAEGEEIFRRAPFVDIVVGPQSITTLPELIVKAS 122

Query: 145 FGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             K  V++TD+    KF+RLS  D  Y   +G +AFL+IQEGCDKFCTFCVVPYTRG E 
Sbjct: 123 RSKGHVINTDFPKVMKFDRLS--DECYGNSQGSSAFLSIQEGCDKFCTFCVVPYTRGAEY 180

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR ++++  EA KL+ NG  EI LLGQNVNA+ G+  +GE      L+  +++I+ L R+
Sbjct: 181 SRPVNEIFREALKLVANGAKEINLLGQNVNAYHGE-YEGEVWDLGKLISHIAKIEKLERI 239

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           RYTTSHPRDM + L  AH +   LMP++HLPVQSGS++IL++MNR++T  EY +II+R R
Sbjct: 240 RYTTSHPRDMHESLYLAHAEAPKLMPFIHLPVQSGSNKILRAMNRKYTTEEYLEIIERFR 299

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
            ++P I  SSDFIVGFPGET+ DF  T+ LV+++ YAQA+SFKYS R GTPG+   +QV 
Sbjct: 300 KLKPKIEFSSDFIVGFPGETEKDFEGTIKLVERVRYAQAYSFKYSTRPGTPGAERKDQVP 359

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSPWLQSVVLNS 442
           E VK ERLL LQK + +QQ+ FN + VG+ I VL   K GK + +++G+SP++QSV ++ 
Sbjct: 360 EKVKTERLLHLQKLINKQQLEFNQSMVGKTIPVLFSNKKGKHQNQIIGKSPYMQSVCIDD 419

Query: 443 KNHNIGD-IIKVRITDVKISTLYGE 466
                 D I+ VRI +   ++L G 
Sbjct: 420 PEDKCRDKIVNVRILEAWQNSLLGR 444


>gi|124514759|gb|EAY56271.1| TRNA-i(6)A37 modification enzyme (MiaB) [Leptospirillum rubarum]
          Length = 468

 Score =  441 bits (1134), Expect = e-121,   Method: Composition-based stats.
 Identities = 189/448 (42%), Positives = 269/448 (60%), Gaps = 14/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + F++K++GCQMNV+DS RM  +  ++G   V+    AD+I++NTC IR+KA +K  S L
Sbjct: 28  KTFYIKTFGCQMNVHDSERMAGLLTAEGGNPVSEPAAADIILVNTCTIRDKADQKALSDL 87

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GRIR ++    KEG   ++ V GC+AQ EGEEI R  P V++++GP     L  LL+ A 
Sbjct: 88  GRIRQVR----KEGPGTILAVTGCMAQREGEEIFRLVPDVDLILGPSQIRNLIPLLDAAS 143

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
             +  VD       +      +     R  GVTAF+T+QEGCDK C +CVVP TRG E S
Sbjct: 144 TSRARVDGTLWPVPEMTTPPAI-----RPPGVTAFVTVQEGCDKACAYCVVPATRGAERS 198

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R ++ +V E   L+ +G  EITLLGQNVN   G+  D    +F +LL  LS+I GL+RLR
Sbjct: 199 RPVTDIVREVENLVSSGFREITLLGQNVNG-YGQKGDTAGASFPELLQRLSDIPGLLRLR 257

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +TTSHP DMS+ LI        +MP+LHLPVQSGSDR+L+ M R ++  +YR+ I+++R 
Sbjct: 258 FTTSHPMDMSEDLIDVMATSSRVMPHLHLPVQSGSDRMLERMQRGYSLDDYRRWIEKLRK 317

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             P+ A+++D IVGF GET++DF  T+  V++  +  AF+F YSPR  TP  +  +    
Sbjct: 318 KVPEAALTTDLIVGFCGETEEDFEKTLAAVEEFRFDGAFAFIYSPRPSTPAHSWEDVPPR 377

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQ----SVVL 440
            +  ERL  LQKK+ +Q +  N + VG  +E+L EK   E    VGR+P  Q     V  
Sbjct: 378 EMSVERLERLQKKVEQQAMERNQSLVGSRVEILTEKWDPETRTAVGRTPQFQTVRALVAP 437

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
              + + GD++ V IT    + L G  V
Sbjct: 438 ERPDPSPGDLLWVTITQGARAGLKGNAV 465


>gi|15609870|ref|NP_217249.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Mycobacterium
           tuberculosis H37Rv]
 gi|31793905|ref|NP_856398.1| hypothetical protein Mb2752c [Mycobacterium bovis AF2122/97]
 gi|121638608|ref|YP_978832.1| hypothetical protein BCG_2746c [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|148662574|ref|YP_001284097.1| hypothetical protein MRA_2759 [Mycobacterium tuberculosis H37Ra]
 gi|148823921|ref|YP_001288675.1| hypothetical protein TBFG_12746 [Mycobacterium tuberculosis F11]
 gi|167967441|ref|ZP_02549718.1| conserved alanine and arginine rich protein [Mycobacterium
           tuberculosis H37Ra]
 gi|215404696|ref|ZP_03416877.1| hypothetical protein Mtub0_13618 [Mycobacterium tuberculosis
           02_1987]
 gi|215412537|ref|ZP_03421271.1| hypothetical protein Mtub9_14345 [Mycobacterium tuberculosis
           94_M4241A]
 gi|215431668|ref|ZP_03429587.1| hypothetical protein MtubE_13568 [Mycobacterium tuberculosis
           EAS054]
 gi|218754467|ref|ZP_03533263.1| hypothetical protein MtubG1_14004 [Mycobacterium tuberculosis GM
           1503]
 gi|219558738|ref|ZP_03537814.1| hypothetical protein MtubT1_16097 [Mycobacterium tuberculosis T17]
 gi|224991100|ref|YP_002645789.1| hypothetical alanine, arginine-rich protein [Mycobacterium bovis
           BCG str. Tokyo 172]
 gi|254232832|ref|ZP_04926159.1| conserved hypothetical alanine, arginine-rich protein
           [Mycobacterium tuberculosis C]
 gi|254365387|ref|ZP_04981432.1| conserved hypothetical alanine, arginine-rich protein
           [Mycobacterium tuberculosis str. Haarlem]
 gi|260187748|ref|ZP_05765222.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Mycobacterium
           tuberculosis CPHL_A]
 gi|260201856|ref|ZP_05769347.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Mycobacterium
           tuberculosis T46]
 gi|289444275|ref|ZP_06434019.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Mycobacterium
           tuberculosis T46]
 gi|289448388|ref|ZP_06438132.1| conserved alanine and arginine rich protein [Mycobacterium
           tuberculosis CPHL_A]
 gi|289570909|ref|ZP_06451136.1| conserved alanine and arginine rich protein [Mycobacterium
           tuberculosis T17]
 gi|289754836|ref|ZP_06514214.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
 gi|289762904|ref|ZP_06522282.1| conserved hypothetical alanine, arginine-rich protein
           [Mycobacterium tuberculosis GM 1503]
 gi|294994178|ref|ZP_06799869.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Mycobacterium
           tuberculosis 210]
 gi|297635339|ref|ZP_06953119.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Mycobacterium
           tuberculosis KZN 4207]
 gi|297732335|ref|ZP_06961453.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Mycobacterium
           tuberculosis KZN R506]
 gi|306777010|ref|ZP_07415347.1| conserved alanine and arginine rich protein [Mycobacterium
           tuberculosis SUMu001]
 gi|306780913|ref|ZP_07419250.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Mycobacterium
           tuberculosis SUMu002]
 gi|306798636|ref|ZP_07436938.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Mycobacterium
           tuberculosis SUMu006]
 gi|306973125|ref|ZP_07485786.1| conserved alanine and arginine rich protein [Mycobacterium
           tuberculosis SUMu010]
 gi|313659668|ref|ZP_07816548.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Mycobacterium
           tuberculosis KZN V2475]
 gi|54040612|sp|P67086|MIAB_MYCBO RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|54042947|sp|P67085|MIAB_MYCTU RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|229890564|sp|A1KM71|MIAB_MYCBP RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|229890569|sp|A5U685|MIAB_MYCTA RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|2292967|emb|CAB10909.1| CONSERVED HYPOTHETICAL ALANINE, ARGININE-RICH PROTEIN
           [Mycobacterium tuberculosis H37Rv]
 gi|31619499|emb|CAD94937.1| CONSERVED HYPOTHETICAL ALANINE, ARGININE-RICH PROTEIN
           [Mycobacterium bovis AF2122/97]
 gi|121494256|emb|CAL72734.1| Conserved hypothetical alanine, arginine-rich protein
           [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|124601891|gb|EAY60901.1| conserved hypothetical alanine, arginine-rich protein
           [Mycobacterium tuberculosis C]
 gi|134150900|gb|EBA42945.1| conserved hypothetical alanine, arginine-rich protein
           [Mycobacterium tuberculosis str. Haarlem]
 gi|148506726|gb|ABQ74535.1| conserved hypothetical alanine and arginine rich protein
           [Mycobacterium tuberculosis H37Ra]
 gi|148722448|gb|ABR07073.1| conserved alanine and arginine rich protein [Mycobacterium
           tuberculosis F11]
 gi|224774215|dbj|BAH27021.1| hypothetical alanine, arginine-rich protein [Mycobacterium bovis
           BCG str. Tokyo 172]
 gi|289417194|gb|EFD14434.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Mycobacterium
           tuberculosis T46]
 gi|289421346|gb|EFD18547.1| conserved alanine and arginine rich protein [Mycobacterium
           tuberculosis CPHL_A]
 gi|289544663|gb|EFD48311.1| conserved alanine and arginine rich protein [Mycobacterium
           tuberculosis T17]
 gi|289695423|gb|EFD62852.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
 gi|289710410|gb|EFD74426.1| conserved hypothetical alanine, arginine-rich protein
           [Mycobacterium tuberculosis GM 1503]
 gi|308214667|gb|EFO74066.1| conserved alanine and arginine rich protein [Mycobacterium
           tuberculosis SUMu001]
 gi|308326311|gb|EFP15162.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Mycobacterium
           tuberculosis SUMu002]
 gi|308341151|gb|EFP30002.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Mycobacterium
           tuberculosis SUMu006]
 gi|308357524|gb|EFP46375.1| conserved alanine and arginine rich protein [Mycobacterium
           tuberculosis SUMu010]
 gi|326904348|gb|EGE51281.1| conserved alanine and arginine rich protein [Mycobacterium
           tuberculosis W-148]
          Length = 512

 Score =  441 bits (1134), Expect = e-121,   Method: Composition-based stats.
 Identities = 169/469 (36%), Positives = 266/469 (56%), Gaps = 20/469 (4%)

Query: 9   GVAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLN 68
           GV    +    +    + + V++YGCQMNV+DS R+  +  + GY R     +AD++V N
Sbjct: 9   GVTGEGAGPPVRRAPARTYQVRTYGCQMNVHDSERLAGLLEAAGYRRATDGSEADVVVFN 68

Query: 69  TCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVV 128
           TC +RE A  ++Y  L  +   K +      D+ + V GC+AQ + + +LRR+P V+VV 
Sbjct: 69  TCAVRENADNRLYGNLSHLAPRKRA----NPDMQIAVGGCLAQKDRDAVLRRAPWVDVVF 124

Query: 129 GPQTYYRLPELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCD 187
           G      LP LLERAR  K   V+   +++     L       +R+    A+++I  GC+
Sbjct: 125 GTHNIGSLPTLLERARHNKVAQVEIAEALQQFPSSLP-----SSRESAYAAWVSISVGCN 179

Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG----E 243
             CTFC+VP  RG E+ RS + ++ E R L+++GV E+TLLGQNVNA+     D      
Sbjct: 180 NSCTFCIVPSLRGREVDRSPADILAEVRSLVNDGVLEVTLLGQNVNAYGVSFADPALPRN 239

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
           +  F++LL +  +I GL R+R+T+ HP + +D +I+A      + P LH+P+QSGSDRIL
Sbjct: 240 RGAFAELLRACGDIDGLERVRFTSPHPAEFTDDVIEAMAQTRNVCPALHMPLQSGSDRIL 299

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           ++M R + A  Y  II+R+R+  P  AI++D IVGFPGET++DF AT+D+V +  +A AF
Sbjct: 300 RAMRRSYRAERYLGIIERVRAAIPHAAITTDLIVGFPGETEEDFAATLDVVRRARFAAAF 359

Query: 364 SFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHG 422
           +F+YS R GTP + +  Q+ + V  ER   L     +  +  N A VGQ +EVL+    G
Sbjct: 360 TFQYSKRPGTPAAQLDGQLPKAVVQERYERLIALQEQISLEANRALVGQAVEVLVATGEG 419

Query: 423 KEK---GKLVGRSPWLQSVVLNS--KNHNIGDIIKVRITDVKISTLYGE 466
           ++     ++ GR+   + V   +       GD+I  ++T+     L  +
Sbjct: 420 RKDTVTARMSGRARDGRLVHFTAGQPRVRPGDVITTKVTEAAPHHLIAD 468


>gi|254304069|ref|ZP_04971427.1| tRNA 2-methylthioadenosine synthase [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
 gi|148324261|gb|EDK89511.1| tRNA 2-methylthioadenosine synthase [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
          Length = 435

 Score =  441 bits (1134), Expect = e-121,   Method: Composition-based stats.
 Identities = 155/445 (34%), Positives = 257/445 (57%), Gaps = 12/445 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++  + +YGCQMNV +S +++ +F + GY+    +D+AD + LNTC +RE AA +++  L
Sbjct: 2   KKASIITYGCQMNVNESAKIKKIFQNLGYDVTEEIDNADAVFLNTCTVREGAATQIFGKL 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           G ++ LK          ++ V GC AQ +GEE++++ PI+++V+G Q   R+P+ +E+  
Sbjct: 62  GELKALKEK-----RGTIIGVTGCFAQEQGEELVKKFPIIDIVMGNQNIGRIPQAIEKIE 116

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
             +   +     ED+                 TA ++I  GC+ FCTFC+VPY RG E S
Sbjct: 117 NNESTHEVYTDNEDEL----PPRLDAEFGSDQTASISITYGCNNFCTFCIVPYVRGRERS 172

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
             L ++V +  + +  G  EI LLGQNVN++     +G+   F+ LL  + +++G   +R
Sbjct: 173 VPLEEIVKDVEQYVKKGAKEIVLLGQNVNSYGKDFKNGD--NFAKLLDEICKVEGDYIVR 230

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           + + HPRD +D +I      D +   LHLP+QSGS +ILK M R +T  +Y  ++D+I+S
Sbjct: 231 FVSPHPRDFTDDVIDVIAKNDKISKCLHLPLQSGSSQILKKMGRGYTKEKYLALVDKIKS 290

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             P +A+++D IVGFPGET++DF  T+D+V K+ +  ++ F YS R GT  + M  Q++E
Sbjct: 291 KIPGVALTADIIVGFPGETEEDFLDTVDVVQKVSFDNSYMFMYSIRKGTKAATMDNQIEE 350

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVLNSK 443
           +VK ERL  L +   +     +     +I++VL+E   K+  + L GR+   + V+    
Sbjct: 351 SVKKERLQRLMEVQNKCSFDESSKYKDKIVKVLVEGPSKKNKEVLSGRTSTNKVVLFKGD 410

Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468
               G  + V+I + K  TLYGE+V
Sbjct: 411 LALKGQFVNVKINECKTWTLYGEIV 435


>gi|323443943|gb|EGB01554.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus
           aureus O46]
          Length = 514

 Score =  440 bits (1133), Expect = e-121,   Method: Composition-based stats.
 Identities = 170/448 (37%), Positives = 266/448 (59%), Gaps = 15/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + F +K+YGCQMN +D+  +  +  + GY+    ++ AD+I++NTC IRE A  KV+S +
Sbjct: 68  RTFLIKTYGCQMNAHDTEVIAGILDALGYQATTDINTADVILINTCAIRENAENKVFSEI 127

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G +++LK    KE  D+L+ V GC++Q E    +IL+    V+++ G    + LPE+LE 
Sbjct: 128 GNLKHLK----KERPDILIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHHLPEILEE 183

Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           A   K +V   +S E D  E L  V     R+  + A++ I  GCDKFCT+C+VP+TRG 
Sbjct: 184 AYLSKAMVVEVWSKEGDVIENLPKV-----REGNIKAWVNIMYGCDKFCTYCIVPFTRGK 238

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR    ++DE R+L   G  EITLLGQNVN+  GK L   +    DLL ++S+I  + 
Sbjct: 239 ERSRRPEDIIDEVRELAREGYKEITLLGQNVNS-YGKDLQDIEYDLGDLLQAISKI-AIP 296

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHP D +D +I    +   ++P++HLPVQSG++ +LK M R++T   Y  ++ R
Sbjct: 297 RVRFTTSHPWDFTDHMIDVISEGGNIVPHIHLPVQSGNNAVLKIMGRKYTRESYLDLVKR 356

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I+   P++A+++D IVG+P E+++ F  T+ L D++G+  A+++ YS R GTP + M + 
Sbjct: 357 IKDRIPNVALTTDIIVGYPNESEEQFEETLTLYDEVGFEHAYTYLYSQRDGTPAAKMKDN 416

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440
           V  +VK ERL  L KK+            GQ + VL E   K+  + L G +   + V  
Sbjct: 417 VPLDVKKERLQRLNKKVGHYSQIAMSKYEGQTVTVLCEGSSKKDDQVLAGYTDKNKLVNF 476

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
            +    IG +++VRI + K  +L G  V
Sbjct: 477 KAPKEMIGKLVEVRIDEAKQYSLNGSFV 504


>gi|150390308|ref|YP_001320357.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Alkaliphilus
           metalliredigens QYMF]
 gi|229890435|sp|A6TR80|MIAB_ALKMQ RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|149950170|gb|ABR48698.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Alkaliphilus
           metalliredigens QYMF]
          Length = 476

 Score =  440 bits (1133), Expect = e-121,   Method: Composition-based stats.
 Identities = 176/448 (39%), Positives = 276/448 (61%), Gaps = 15/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++    +YGCQMN +DS ++  +  + GY   N  ++A+LI+ NTC +RE A  KVY  +
Sbjct: 39  KKHLTVTYGCQMNEHDSEKLAGILQNIGYIETNDKNEANLIIYNTCCVRENAELKVYGNI 98

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G ++NLK    KE  DL + V GC+ Q     +EI  +   V++V G    ++ PELL  
Sbjct: 99  GSLKNLK----KEKHDLTIAVCGCMMQQPHVVKEIKSKYRHVDLVFGTHNLHKFPELLST 154

Query: 143 A-RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           +      ++D      D  E L +      RK G+ AF+ I  GC+ FCT+C+VP+TRG 
Sbjct: 155 SMESDNMIIDVWDKEGDIVEGLPVT-----RKYGLKAFINIMFGCNNFCTYCIVPHTRGR 209

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR + +++DE  +L  NG  EITLLGQNVN+  GK L+ E+  F +LL  L++I+G+ 
Sbjct: 210 ERSREVQEIIDEVEELAKNGTKEITLLGQNVNS-YGKTLE-EETDFGNLLKVLNKIEGIE 267

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+ TSHP+D+SD LI A      +  +LHLP Q+GS+ ILK+MNR++T   Y +++++
Sbjct: 268 RIRFMTSHPKDLSDSLISAMTVCTKVCAHLHLPFQAGSNDILKAMNRKYTKEAYLELVEK 327

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +RS  P++A+++D IVGFPGET+DDF+ T+++V+K  +  A+++ YS R  TP + M   
Sbjct: 328 VRSKVPNVALTTDIIVGFPGETEDDFKETLNVVEKARFNSAYTYLYSLRQETPAAKMENH 387

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVL 440
           V ++VK ER   L + +       N A + +++EVL+E   K +  KL+GR+P  + V  
Sbjct: 388 VPDDVKHERFNRLIEAVNRISGEINKAYLNKVVEVLVEGTSKTDDAKLMGRTPQSKLVNF 447

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                +IG I++V+IT+ K  +L GEL+
Sbjct: 448 AGNKEDIGQIVRVKITEPKTFSLNGELL 475


>gi|302558013|ref|ZP_07310355.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Streptomyces griseoflavus
           Tu4000]
 gi|302475631|gb|EFL38724.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Streptomyces griseoflavus
           Tu4000]
          Length = 505

 Score =  440 bits (1133), Expect = e-121,   Method: Composition-based stats.
 Identities = 174/451 (38%), Positives = 254/451 (56%), Gaps = 20/451 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDD--ADLIVLNTCHIREKAAEKVYS 82
           + + V++YGCQMNV+DS R+  +    GY R     D  AD++V NTC +RE A  K+Y 
Sbjct: 14  RTYEVRTYGCQMNVHDSERLSGLLEDAGYVRAPEGSDGDADVVVFNTCAVRENADNKLYG 73

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            LG +   K SR      + + V GC+AQ + + I++R+P V+VV G     +LP LLER
Sbjct: 74  NLGHLAPKKASR----PGMQIAVGGCLAQKDRDTIVKRAPWVDVVFGTHNIGKLPVLLER 129

Query: 143 ARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           AR  +   V+   S+E     L        R+    A+++I  GC+  CTFC+VP  RG 
Sbjct: 130 ARVQEEAQVEIAESLEAFPSTLPT-----RRESAYAAWVSISVGCNNTCTFCIVPALRGK 184

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E  R    ++ E   L+  GV EITLLGQNVNA  G  + G++  FS LL +  +I GL 
Sbjct: 185 EKDRRTGDILAEIEALVAEGVSEITLLGQNVNA-YGSDI-GDREAFSKLLRACGKIDGLE 242

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+T+ HPRD +D +I A  +   +MP LH+P+QSGSD +LK+M R +    Y  II++
Sbjct: 243 RVRFTSPHPRDFTDDVIAAMAETPNVMPQLHMPLQSGSDPVLKAMRRSYRQERYLGIIEK 302

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R+  P  AIS+D IVGFPGET++DF  T+ +V +  +AQAF+F+YS R GTP + M  Q
Sbjct: 303 VRAAIPHAAISTDIIVGFPGETEEDFEQTLHVVREARFAQAFTFQYSKRPGTPAAEMDGQ 362

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKG---KLVGRSPWLQS 437
           + + V  ER   L +         N   VG+ +E+++ E  G++     +L GR+P  + 
Sbjct: 363 IPKKVVQERYERLVELQEAISWEENKKQVGRTLELMVAEGEGRKDDATHRLSGRAPDSRL 422

Query: 438 VVLNSK--NHNIGDIIKVRITDVKISTLYGE 466
           V           GD++ V IT      L  E
Sbjct: 423 VHFTKPEQEVRPGDVVTVEITYAAPHHLLAE 453


>gi|256840979|ref|ZP_05546486.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Parabacteroides sp. D13]
 gi|256736822|gb|EEU50149.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Parabacteroides sp. D13]
          Length = 457

 Score =  440 bits (1133), Expect = e-121,   Method: Composition-based stats.
 Identities = 161/446 (36%), Positives = 256/446 (57%), Gaps = 11/446 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F+++YGCQMNV DS  +  +    GY    ++++AD I +NTC +R+ A +K+Y  L
Sbjct: 19  RKLFIETYGCQMNVADSEVVASIMKMDGYSMTENIEEADAIFVNTCSVRDNAEQKIYGRL 78

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
              ++LK         L+V V GC+A+   E+++      ++VVGP +Y  LP L+    
Sbjct: 79  QYFQSLKRK----KKSLIVGVLGCMAERVKEDLIHVH-HADLVVGPDSYLDLPNLVGAVE 133

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G++ ++ + S ++ ++ +  +        G   F++I  GC+ FCT+C+VPYTRG E S
Sbjct: 134 HGEKAINVELSTQETYKDVIPLKLPGVHISG---FVSIMRGCNNFCTYCIVPYTRGRERS 190

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R +  +++E R + + G  E+TLLGQNVN+      +GE  TF  LL  +++    +R+R
Sbjct: 191 RDIESILNEIRDMHEKGFKEVTLLGQNVNS-YSFEKEGETITFPILLDRVAKEVPDMRIR 249

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +TTSHP+DMSD  ++     D +  ++HLP QSGS RIL  MNR++T   Y   I  IR 
Sbjct: 250 FTTSHPKDMSDDTLRVIAANDNICKFIHLPAQSGSSRILMVMNRKYTREWYLDRIAAIRR 309

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQVD 383
           + PD AIS+D   GF  ET+ D++ T+ L+ ++GY  AF FKYS R GT  + ++ + V 
Sbjct: 310 IVPDCAISTDLFCGFHSETEGDYQETLSLMREVGYDSAFLFKYSERPGTYAASHLEDNVP 369

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNS 442
           E  K  RL  +     +     N   +G+  EVLIE   K    +L GR+   + V+ + 
Sbjct: 370 EEEKVRRLQGMIDLQNKLSEESNLRDIGKTFEVLIEGFSKRSREQLFGRTSQNKVVIFDK 429

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
           KN+++G  IKV+I     +TL+GE V
Sbjct: 430 KNYHVGQFIKVKIHKASSATLFGEPV 455


>gi|269940783|emb|CBI49165.1| radical SAM superfamily protein [Staphylococcus aureus subsp.
           aureus TW20]
          Length = 514

 Score =  440 bits (1133), Expect = e-121,   Method: Composition-based stats.
 Identities = 170/448 (37%), Positives = 265/448 (59%), Gaps = 15/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + F +K+YGCQMN +D+  +  +  + GY+    ++ AD+I++NTC IRE A  KV S +
Sbjct: 68  RTFLIKTYGCQMNAHDTEVIAGILEALGYQATTDINTADVILINTCAIRENAENKVLSEI 127

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G +++LK    KE  D+L+ V GC++Q E    +IL+    V+++ G    + LPE+LE 
Sbjct: 128 GNLKHLK----KERPDILIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHHLPEILEE 183

Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           A   K +V   +S E D  E L  V     R+  + A++ I  GCDKFCT+C+VP+TRG 
Sbjct: 184 AYLSKAMVVEVWSKEGDVIENLPKV-----REGNIKAWVNIMYGCDKFCTYCIVPFTRGK 238

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR    ++DE R+L   G  EITLLGQNVN+  GK L   +    DLL ++S+I  + 
Sbjct: 239 ERSRRPEDIIDEVRELAREGYKEITLLGQNVNS-YGKDLQDIEYDLGDLLQAISKI-AIP 296

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHP D +D +I    +   ++P++HLPVQSG++ +LK M R++T   Y  ++ R
Sbjct: 297 RVRFTTSHPWDFTDHMIDVISEGGNIVPHIHLPVQSGNNAVLKIMGRKYTRESYLDLVKR 356

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I+   P++A+++D IVG+P E+++ F  T+ L D++G+  A+++ YS R GTP + M + 
Sbjct: 357 IKDRIPNVALTTDIIVGYPNESEEQFEETLTLYDEVGFEHAYTYLYSQRDGTPAAKMKDN 416

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440
           V  NVK ERL  L KK+            GQ + VL E   K+  + L G +   + V  
Sbjct: 417 VPLNVKKERLQRLNKKVGHYSQIAMSKYEGQTVTVLCEGSSKKDDQVLAGYTDKNKLVNF 476

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
            +    IG +++VRI + K  +L G  +
Sbjct: 477 KAPKEMIGKLVEVRIDEAKQYSLNGSFI 504


>gi|258416055|ref|ZP_05682323.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           A9763]
 gi|257839203|gb|EEV63679.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           A9763]
          Length = 514

 Score =  440 bits (1133), Expect = e-121,   Method: Composition-based stats.
 Identities = 171/448 (38%), Positives = 265/448 (59%), Gaps = 15/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + F +K+YGCQMN +D+  +  +  + GY+    ++ AD+I++NTC IRE A  KV+S +
Sbjct: 68  RTFLIKTYGCQMNAHDTEVIAGILEALGYQATTDINTADVILINTCAIRENAENKVFSEI 127

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G +++LK    KE  D+L+ V GC++Q E    +IL+    V+++ G    + LPE+LE 
Sbjct: 128 GNLKHLK----KERPDILIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHHLPEILEE 183

Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           A   K +V   +S E D  E L  V  G      + A++ I  GCDKFCT+C+VP+TRG 
Sbjct: 184 AYLSKAMVVEVWSKEGDVIENLPKVCEG-----NIKAWVNIMYGCDKFCTYCIVPFTRGK 238

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR    ++DE R+L   G  EITLLGQNVN+  GK L   +    DLL ++S+I  + 
Sbjct: 239 ERSRRPEDIIDEVRELAREGYKEITLLGQNVNS-YGKDLQDIEYDLGDLLQAISKI-AIP 296

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHP D +D +I    +   ++P++HLPVQSG++ +LK M R++T   Y  ++ R
Sbjct: 297 RVRFTTSHPWDFTDHMIDVISEGGNIVPHIHLPVQSGNNAVLKIMGRKYTRESYLDLVKR 356

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I+   P++A+++D IVG+P E+++ F  T+ L D++G+  A+++ YS R GTP + M + 
Sbjct: 357 IKDRIPNVALTTDIIVGYPNESEEQFEETLTLYDEVGFEHAYTYLYSQRDGTPAAKMKDN 416

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440
           V  NVK ERL  L KK+            GQ + VL E   K+  + L G +   + V  
Sbjct: 417 VPLNVKKERLQRLNKKVGHYSQIAMSKYEGQTVTVLCEGSSKKDDQVLAGYTDKNKLVNF 476

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
            +    IG +++VRI + K  +L G  V
Sbjct: 477 KAPKEMIGKLVEVRIDEAKQYSLNGSFV 504


>gi|227824423|ref|ZP_03989255.1| RNA modification enzyme [Acidaminococcus sp. D21]
 gi|226904922|gb|EEH90840.1| RNA modification enzyme [Acidaminococcus sp. D21]
          Length = 441

 Score =  440 bits (1133), Expect = e-121,   Method: Composition-based stats.
 Identities = 162/446 (36%), Positives = 248/446 (55%), Gaps = 10/446 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + + + + +YGCQMN  DS          GYE     + AD++V+NTC +RE A +K+  
Sbjct: 1   MKKTYAIINYGCQMNESDSEHYAGQLLDLGYEASADYEHADVVVINTCCVRENAEKKILG 60

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +G ++ LK    +E  D+++ VAGC+AQ  G+++ ++ P V++V+G         +L+ 
Sbjct: 61  KIGEMKRLK----RENPDMVLCVAGCMAQEWGKDLQKKYPQVDLVLGTAHVNNFSSILQN 116

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
              G    ++ Y  +D        +G + RK    A++ I  GC+ FCT+C+VPY RG E
Sbjct: 117 HLAGHGRAESVY--DDLTIMPQEFEGSFVRKSSFAAWVPIMYGCNNFCTYCIVPYVRGRE 174

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SRS   +  E  K +  G  E TLLGQNVN+  GK   GE+  FS LL  +  I G+ R
Sbjct: 175 RSRSAEAICHEIEKAVALGYKEFTLLGQNVNS-YGKDR-GEEEGFSKLLELVDAIPGVER 232

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +RY TSHPRDMS+ +++   +   +    H+PVQSGS RI+K+MNR +    Y ++++ I
Sbjct: 233 IRYMTSHPRDMSEAVVRTIAESQHICKNFHIPVQSGSSRIMKAMNRGYDRERYLKLVETI 292

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R   PD  I++D IVGFPGET+ DF  T+DL+  + Y  AF+F YSPR GTP +    QV
Sbjct: 293 RRCVPDAVITTDLIVGFPGETEKDFEETLDLLRTVEYDDAFTFIYSPRKGTPAAGFGAQV 352

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVLN 441
            + VK ERL  L     E  +  N   VG+ + V++E   K     L GR+     V+  
Sbjct: 353 PDAVKHERLDRLMALQNEICLKRNKRLVGRTLAVMVEGPSKSNPAMLSGRTDGNDLVLWP 412

Query: 442 S-KNHNIGDIIKVRITDVKISTLYGE 466
             ++H  GD++ V++   +   + G+
Sbjct: 413 KIRDHAPGDLVNVKMERAQTWLIRGK 438


>gi|86131573|ref|ZP_01050171.1| tRNA-i(6)A37 modification enzyme MiaB [Dokdonia donghaensis MED134]
 gi|85818018|gb|EAQ39186.1| tRNA-i(6)A37 modification enzyme MiaB [Dokdonia donghaensis MED134]
          Length = 484

 Score =  440 bits (1133), Expect = e-121,   Method: Composition-based stats.
 Identities = 175/459 (38%), Positives = 261/459 (56%), Gaps = 21/459 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F++SYGCQMN  DS  +  +  ++GY    ++++ADL+++NTC IREKA   V   L
Sbjct: 24  KKLFIESYGCQMNFADSEVVASILANEGYNTTQNLEEADLVLVNTCSIREKAEVTVRKRL 83

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            + + +K    K+   + V V GC+A+    + L    IV++VVGP  Y  +P LL    
Sbjct: 84  EKYQAVKR---KQNPTMKVGVLGCMAERLKSKFLEEEKIVDLVVGPDAYKDIPNLLSEVE 140

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G+  V+   S E+ +  +S V        GVTAF++I  GCD  CTFCVVP+TRG E S
Sbjct: 141 EGRDAVNVILSKEETYGDISPVRLQ---TNGVTAFVSITRGCDNMCTFCVVPFTRGRERS 197

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNA--WRGKGL--DGEKCT---------FSDLL 251
           R    +++E + L + G  EITLLGQNV++  W G GL  D +K +         F+ L+
Sbjct: 198 RDPQSILEEVQDLANRGFKEITLLGQNVDSYLWYGGGLKKDFDKASEMAKATAVNFAQLM 257

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
             +++ +  +R+R++TS+P+DM+  +I+       +  Y+HLPVQSGSDRILK MNR+HT
Sbjct: 258 DMVAKAQPKMRIRFSTSNPQDMTLDVIEVMASHKNICNYIHLPVQSGSDRILKLMNRQHT 317

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
             EY+ +ID I+++ PDI IS D I GFP ET++D + T+DL+D + Y   F F YS R 
Sbjct: 318 VAEYKTLIDNIKNLIPDIGISQDMITGFPTETEEDHQGTLDLIDYVKYDYGFMFYYSERP 377

Query: 372 GTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLV 429
           GT     M + +   +K  RL  +    RE           Q IEVLIEK  K+ K +  
Sbjct: 378 GTLAERKMEDDIPLEIKKRRLQDVIDLQREISRKNLLRYQDQTIEVLIEKESKKNKDEWS 437

Query: 430 GRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           GR+      V    ++ +GD + V++ +    TL GE V
Sbjct: 438 GRNDQNVVAVFPKGDYKVGDFVNVKVNECTTGTLIGEAV 476


>gi|326333227|ref|ZP_08199474.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Nocardioidaceae bacterium
           Broad-1]
 gi|325948871|gb|EGD40964.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Nocardioidaceae bacterium
           Broad-1]
          Length = 500

 Score =  440 bits (1133), Expect = e-121,   Method: Composition-based stats.
 Identities = 169/462 (36%), Positives = 264/462 (57%), Gaps = 19/462 (4%)

Query: 13  MVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHI 72
           M + I       + + V++YGCQMNV+DS R+  +    GY +      AD++V NTC +
Sbjct: 1   MTTSIASGSATARTYEVRTYGCQMNVHDSERLSGLLEDAGYLKATEGTQADVVVFNTCAV 60

Query: 73  REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT 132
           RE A  K+Y  L  +  +K +      DL + V GC+AQ +   I  ++P V+VV G   
Sbjct: 61  RENADNKLYGNLSHLAPIKEA----NPDLQIAVGGCLAQKDRATITEKAPYVDVVFGTHN 116

Query: 133 YYRLPELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCT 191
              LP LLERAR  +   V+   S+E     L        R+    A++++  GC+  CT
Sbjct: 117 IGSLPVLLERARVQEEAQVEILESLEVFPSTLPT-----KRESAYAAWVSVSVGCNNTCT 171

Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLL 251
           FC+VP  RG E  R   +++ E   L+  GV E+TLLGQNVNA+  +   G++  FS LL
Sbjct: 172 FCIVPSLRGKEKDRRPGEILAEIEALVAEGVTEVTLLGQNVNAYGVEF--GDRQAFSKLL 229

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
            +  EI+GL R+R+T+ HP + +D +I+A  +   +MP LH+P+QSGSDR+LK+M R + 
Sbjct: 230 RACGEIEGLERVRFTSPHPAEFTDDVIEAMAETPNVMPSLHMPLQSGSDRVLKAMRRSYR 289

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
           + ++  II+R+R   P  AI++D IVGFPGET++DF+AT+D+V +  +A AF+F+YS R 
Sbjct: 290 STKFLGIIERVREAIPHAAITTDIIVGFPGETEEDFQATLDVVRESRFASAFTFQYSKRP 349

Query: 372 GTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKG---K 427
           GTP +++ +Q+   V  +R   L   + E     N   VG+ +E+++ E  G++     +
Sbjct: 350 GTPAADLPDQISPEVVKDRYGRLVDLVNEIAYEENKKNVGRTLELMVAEGEGRKDAETHR 409

Query: 428 LVGRSPWLQSVVLN---SKNHNIGDIIKVRITDVKISTLYGE 466
           L GR+P  + V  N   ++    GD++KV IT      L  +
Sbjct: 410 LSGRAPDNRLVHFNAAGAEGVRPGDMVKVEITYAAPHHLVAD 451


>gi|237745063|ref|ZP_04575544.1| tRNA 2-methylthioadenosine synthase [Fusobacterium sp. 7_1]
 gi|256026731|ref|ZP_05440565.1| MIAB protein [Fusobacterium sp. D11]
 gi|289764728|ref|ZP_06524106.1| tRNA 2-methylthioadenosine synthase [Fusobacterium sp. D11]
 gi|229432292|gb|EEO42504.1| tRNA 2-methylthioadenosine synthase [Fusobacterium sp. 7_1]
 gi|289716283|gb|EFD80295.1| tRNA 2-methylthioadenosine synthase [Fusobacterium sp. D11]
          Length = 435

 Score =  440 bits (1132), Expect = e-121,   Method: Composition-based stats.
 Identities = 157/445 (35%), Positives = 257/445 (57%), Gaps = 12/445 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +R  + +YGCQMNV +S +++ +F + GY+    +D+AD + LNTC +RE AA +++  L
Sbjct: 2   KRASIITYGCQMNVNESAKIKKIFQNLGYDITEEIDNADAVFLNTCTVREGAATQIFGKL 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           G ++ LK          ++ V GC AQ +GEE++++ PI+++V+G Q   R+P+ +E+  
Sbjct: 62  GELKALKEK-----RGTIIGVTGCFAQEQGEELVKKFPIIDIVMGNQNIGRIPQAIEKIE 116

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
             +   +     ED+                 TA ++I  GC+ FCTFC+VPY RG E S
Sbjct: 117 NNESTHEVYTDNEDEL----PPRLDAEFGSDQTASISITYGCNNFCTFCIVPYVRGRERS 172

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
             L ++V +  + +  G  EI LLGQNVN++     +G+   F+ LL  + ++KG   +R
Sbjct: 173 VPLEEIVKDVEQYVKKGAKEIVLLGQNVNSYGKDFKNGD--NFAKLLDEICKVKGDYIVR 230

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           + + HPRD +D +I      D +   LHLP+QSGS +IL+ M R +T  +Y  ++D+I+S
Sbjct: 231 FVSPHPRDFTDDVIDVIAKNDKISKCLHLPLQSGSSQILRKMGRGYTKEKYLALVDKIKS 290

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             P +A+++D IVGFPGET++DF  T+D+V K+ +  ++ F YS R GT  + M  Q+DE
Sbjct: 291 KIPGVALTADIIVGFPGETEEDFLDTIDVVQKVSFDNSYMFMYSIRKGTKAATMDNQIDE 350

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVLNSK 443
           +VK ERL  L +   +   + +     +I+ VL+E   K+  + L GR+   + V+    
Sbjct: 351 SVKKERLQRLMEVQNKCSFNESSKYKDKIVRVLVEGPSKKNKEVLSGRTSTNKIVLFKGD 410

Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468
               G  + V+I + K  TLYGE+V
Sbjct: 411 IALKGQFVNVKINECKTWTLYGEIV 435


>gi|260910435|ref|ZP_05917107.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella sp. oral taxon
           472 str. F0295]
 gi|260635511|gb|EEX53529.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella sp. oral taxon
           472 str. F0295]
          Length = 440

 Score =  440 bits (1132), Expect = e-121,   Method: Composition-based stats.
 Identities = 162/446 (36%), Positives = 257/446 (57%), Gaps = 10/446 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ ++++YGCQMNV DS  +  +    GYE      +AD I +NTC +RE A  K+Y+ L
Sbjct: 2   KKLYIETYGCQMNVADSEVVAAVMQMAGYEMCQDEAEADAIFMNTCSVRENAENKIYNRL 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             +    ++  K+G  +++ V GC+A+   ++++       +V GP +Y  LP+++ +A 
Sbjct: 62  DTL----HAEQKKGRKVILGVLGCMAERVKDDLIENH-HAQLVAGPDSYLNLPDMIAQAE 116

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G + +D   S  + ++ +        +  G   F++I  GCD FC +C+VPYTRG E S
Sbjct: 117 AGNKAIDIALSKTETYKDIVPQRVALAKISG---FVSIMRGCDNFCHYCIVPYTRGRERS 173

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R +  +++E R L   G  E+TLLGQNVN++R    +G+   F  LL  ++E    +R+R
Sbjct: 174 RDVDSILNEVRNLQQQGYKEVTLLGQNVNSYRFVNDEGQTVDFPQLLRLVAEAVPTMRIR 233

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           ++T HP+DMSD  ++   ++  +  ++HLP+QSGSD++LK MNR++T   Y   +  IR 
Sbjct: 234 FSTPHPKDMSDATLRVIAEVPNVCRHIHLPIQSGSDKVLKLMNRKYTVEWYLSRVKAIRE 293

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN-MLEQVD 383
           + PD  +S+D  VG+ GET+ D   ++ ++ ++GY  AF FKYS R GT  S  + + V 
Sbjct: 294 LVPDCGLSTDIFVGYHGETEADHEESLRIMREVGYDSAFMFKYSERPGTYASKHLPDDVP 353

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNS 442
           E+VK  RL  L     E     N A VG I EVL+E   K    +L GR+   + VV + 
Sbjct: 354 EDVKIRRLNELIMVQNENSARANHAEVGNIREVLVEGPSKRSREQLCGRTEQNKMVVFDK 413

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
            NH+IG+ +KVRIT    +TL GE V
Sbjct: 414 GNHHIGEYVKVRITGSTSATLLGEAV 439


>gi|308380459|ref|ZP_07490004.2| tRNA-I(6)A37 thiotransferase enzyme MiaB [Mycobacterium
           tuberculosis SUMu011]
 gi|308361421|gb|EFP50272.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Mycobacterium
           tuberculosis SUMu011]
          Length = 500

 Score =  440 bits (1132), Expect = e-121,   Method: Composition-based stats.
 Identities = 169/469 (36%), Positives = 266/469 (56%), Gaps = 20/469 (4%)

Query: 9   GVAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLN 68
           GV    +    +    + + V++YGCQMNV+DS R+  +  + GY R     +AD++V N
Sbjct: 9   GVTGEGAGPPVRRAPARTYQVRTYGCQMNVHDSERLAGLLEAAGYRRATDGSEADVVVFN 68

Query: 69  TCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVV 128
           TC +RE A  ++Y  L  +   K +      D+ + V GC+AQ + + +LRR+P V+VV 
Sbjct: 69  TCAVRENADNRLYGNLSHLAPRKRA----NPDMQIAVGGCLAQKDRDAVLRRAPWVDVVF 124

Query: 129 GPQTYYRLPELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCD 187
           G      LP LLERAR  K   V+   +++     L       +R+    A+++I  GC+
Sbjct: 125 GTHNIGSLPTLLERARHNKVAQVEIAEALQQFPSSLP-----SSRESAYAAWVSISVGCN 179

Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG----E 243
             CTFC+VP  RG E+ RS + ++ E R L+++GV E+TLLGQNVNA+     D      
Sbjct: 180 NSCTFCIVPSLRGREVDRSPADILAEVRSLVNDGVLEVTLLGQNVNAYGVSFADPALPRN 239

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
           +  F++LL +  +I GL R+R+T+ HP + +D +I+A      + P LH+P+QSGSDRIL
Sbjct: 240 RGAFAELLRACGDIDGLERVRFTSPHPAEFTDDVIEAMAQTRNVCPALHMPLQSGSDRIL 299

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           ++M R + A  Y  II+R+R+  P  AI++D IVGFPGET++DF AT+D+V +  +A AF
Sbjct: 300 RAMRRSYRAERYLGIIERVRAAIPHAAITTDLIVGFPGETEEDFAATLDVVRRARFAAAF 359

Query: 364 SFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHG 422
           +F+YS R GTP + +  Q+ + V  ER   L     +  +  N A VGQ +EVL+    G
Sbjct: 360 TFQYSKRPGTPAAQLDGQLPKAVVQERYERLIALQEQISLEANRALVGQAVEVLVATGEG 419

Query: 423 KEK---GKLVGRSPWLQSVVLNS--KNHNIGDIIKVRITDVKISTLYGE 466
           ++     ++ GR+   + V   +       GD+I  ++T+     L  +
Sbjct: 420 RKDTVTARMSGRARDGRLVHFTAGQPRVRPGDVITTKVTEAAPHHLIAD 468


>gi|41408944|ref|NP_961780.1| hypothetical protein MAP2846c [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|81413559|sp|Q73W15|MIAB_MYCPA RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|41397303|gb|AAS05163.1| hypothetical protein MAP_2846c [Mycobacterium avium subsp.
           paratuberculosis K-10]
          Length = 517

 Score =  440 bits (1132), Expect = e-121,   Method: Composition-based stats.
 Identities = 168/466 (36%), Positives = 260/466 (55%), Gaps = 20/466 (4%)

Query: 12  HMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNS-MDDADLIVLNTC 70
            + S +       + + V++YGCQMNV+DS R+  +  + GY R     + AD++V NTC
Sbjct: 16  PVTSTVARDVSGVRTYQVRTYGCQMNVHDSERLAGLLEAAGYRRAAEGAEVADVVVFNTC 75

Query: 71  HIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGP 130
            +RE A  K+Y  L  +   K        ++ + V GC+AQ + E +LRR+P V+VV G 
Sbjct: 76  AVRENADNKLYGNLSHLAPRKRG----NPEMQIAVGGCLAQKDREAVLRRAPWVDVVFGT 131

Query: 131 QTYYRLPELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKF 189
                LP LLERAR  K   V+   +++     L        R+    A+++I  GC+  
Sbjct: 132 HNIGSLPTLLERARHNKAAQVEIAEALQQFPSSLPSA-----RESAYAAWVSISVGCNNS 186

Query: 190 CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG----EKC 245
           CTFC+VP  RG E+ RS   ++ E R L+ +GV E+TLLGQNVNA+     D     ++ 
Sbjct: 187 CTFCIVPSLRGKEVDRSPDDILAEVRSLVADGVLEVTLLGQNVNAYGVSFADPALPRDRG 246

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
            F+ LL +  EI GL R+R+T+ HP + +D +I+A      + P LH+P+QSGSDR+L++
Sbjct: 247 AFARLLRACGEIDGLERVRFTSPHPAEFTDDVIEAMAQTPNVCPALHMPLQSGSDRVLRA 306

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           M R + A  +  IIDR+R+  P  AI++D IVGFPGET++DF AT+D+V +  +A AF+F
Sbjct: 307 MRRSYRAERFLGIIDRVRAAMPHAAITTDLIVGFPGETEEDFAATLDVVRRARFAAAFTF 366

Query: 366 KYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKE 424
           +YS R GTP + +  Q+ + V  ER   L +      +  N A VGQ +E+L+    G++
Sbjct: 367 QYSKRPGTPAAELDGQIPKAVVQERYERLVELQESISLQGNQALVGQTVELLVATGEGRK 426

Query: 425 KG---KLVGRSPWLQSVVLNSKN-HNIGDIIKVRITDVKISTLYGE 466
                ++ GR+   + V   + +    GD++   IT      L  +
Sbjct: 427 DSATARMSGRARDGRLVHFAADDRVRPGDLVTTVITGAAPHHLIAD 472


>gi|116670023|ref|YP_830956.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Arthrobacter
           sp. FB24]
 gi|229890444|sp|A0JUY6|MIAB_ARTS2 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|116610132|gb|ABK02856.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Arthrobacter sp. FB24]
          Length = 522

 Score =  440 bits (1131), Expect = e-121,   Method: Composition-based stats.
 Identities = 162/451 (35%), Positives = 255/451 (56%), Gaps = 19/451 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + + V+++GCQMNV+DS RM  M    GY    S ++AD++V NTC +RE A  K+Y  L
Sbjct: 28  RTYQVRTFGCQMNVHDSERMAGMLEDAGYVPA-SGENADVVVFNTCAVRENADNKLYGNL 86

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           G +  +K +       + + V GC+AQ + E IL+++P V+ V G      LP LL+RAR
Sbjct: 87  GMLAPVKAA----NPGMQIAVGGCLAQKDRETILKKAPWVDAVFGTHNVGALPALLDRAR 142

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
                        D F           R    + +++I  GC+  CTFC+VP  RG E  
Sbjct: 143 HNNEAQLEILESLDVFPSTLPT----KRDSVYSGWVSISVGCNNTCTFCIVPALRGKEKD 198

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R    ++ E + L+D+G  E+TLLGQNVN++  +   G++  FS LL +  EI+GL R+R
Sbjct: 199 RRPGDILAEIQALVDDGAIEVTLLGQNVNSYGVEF--GDRQAFSKLLRACGEIQGLERVR 256

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +T+ HP   +D +I A  +   +MP LH+P+QSGSD++LK M R + + ++  I+D++R 
Sbjct: 257 FTSPHPAAFTDDVIDAMAETPNVMPQLHMPLQSGSDKVLKDMKRSYRSTKFLGILDKVRE 316

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             P  AIS+D IVGFPGET++DF+AT+D+V+K  +A AF+F+YS R GTP +++ +Q+ +
Sbjct: 317 RIPHAAISTDIIVGFPGETEEDFQATLDVVEKSRFATAFTFQYSKRPGTPAADLPDQLPK 376

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE----KHGKEKGKLVGRSPWLQSVVL 440
            V  ER   L           N   +G+ +EV++     +  +E  +L GRS   + V  
Sbjct: 377 AVVQERFERLTALQDRIAAEENARQLGRRVEVMVTAQSGRKSEETHRLSGRSQDQRLVHF 436

Query: 441 N----SKNHNIGDIIKVRITDVKISTLYGEL 467
           +    ++    GD++ V IT+     L  + 
Sbjct: 437 SVPEGAEKPRPGDLVTVTITEAAAFHLVADP 467


>gi|229891227|sp|Q5GSS2|MIAB_WOLTR RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
          Length = 442

 Score =  440 bits (1131), Expect = e-121,   Method: Composition-based stats.
 Identities = 230/445 (51%), Positives = 317/445 (71%), Gaps = 11/445 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +  ++K+YGCQMNVYDS+ ME++    G+  VN ++ ADL++LNTCHIREKAAEK+YS L
Sbjct: 2   KSLYIKTYGCQMNVYDSILMENIIKPLGFNVVNDVEKADLVILNTCHIREKAAEKLYSEL 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           G+I +      ++  ++ +V AGCVAQAEGEEI RR+P V++VVGPQ+   LPEL+ +A 
Sbjct: 62  GKIHS-----SRKNKEITIVAAGCVAQAEGEEIFRRAPFVDIVVGPQSITTLPELIVKAS 116

Query: 145 FGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             K  V++TD+    KF+RLS  D  Y   +G +AFL+IQEGCDKFCTFCVVPYTRG E 
Sbjct: 117 RSKGHVINTDFPKVMKFDRLS--DECYGNSQGSSAFLSIQEGCDKFCTFCVVPYTRGAEY 174

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR ++++  EA KL+ NG  EI LLGQNVNA+ G+  +GE      L+  +++I+ L R+
Sbjct: 175 SRPVNEIFREALKLVANGAKEINLLGQNVNAYHGE-YEGEVWDLGKLISHIAKIEKLERI 233

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           RYTTSHPRDM + L  AH +   LMP++HLPVQSGS++IL++MNR++T  EY +II+R R
Sbjct: 234 RYTTSHPRDMHESLYLAHAEAPKLMPFIHLPVQSGSNKILRAMNRKYTTEEYLEIIERFR 293

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
            ++P I  SSDFIVGFPGET+ DF  T+ LV+++ YAQA+SFKYS R GTPG+   +QV 
Sbjct: 294 KLKPKIEFSSDFIVGFPGETEKDFEGTIKLVERVRYAQAYSFKYSTRPGTPGAERKDQVP 353

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSPWLQSVVLNS 442
           E VK ERLL LQK + +QQ+ FN + VG+ I VL   K GK + +++G+SP++QSV ++ 
Sbjct: 354 EKVKTERLLHLQKLINKQQLEFNQSMVGKTIPVLFSNKKGKHQNQIIGKSPYMQSVCIDD 413

Query: 443 KNHNIGD-IIKVRITDVKISTLYGE 466
                 D I+ VRI +   ++L G 
Sbjct: 414 PEDKCRDKIVNVRILEAWQNSLLGR 438


>gi|220909156|ref|YP_002484467.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Cyanothece sp.
           PCC 7425]
 gi|219865767|gb|ACL46106.1| RNA modification enzyme, MiaB family [Cyanothece sp. PCC 7425]
          Length = 446

 Score =  440 bits (1131), Expect = e-121,   Method: Composition-based stats.
 Identities = 177/457 (38%), Positives = 274/457 (59%), Gaps = 23/457 (5%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
             +R+ + ++GCQMN  DS RM  +    G+    + + ADL++ NTC IR+ A +KVYS
Sbjct: 3   ATRRYHITTFGCQMNKADSERMAGVLEDLGFIWEENPEVADLVLYNTCTIRDNAEQKVYS 62

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
           +LG+    K    ++  DL +VVAGCVAQ EGE++LRR P +++V+GPQ   RL ELLE+
Sbjct: 63  YLGKQARRK----RDRPDLTLVVAGCVAQQEGEQLLRRVPELDLVMGPQYANRLGELLEQ 118

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGG--YNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
              G +VV T        E L IV+      R   VTA++ +  GC++ CT+CVVP  RG
Sbjct: 119 VFNGNQVVAT--------EPLQIVEDITKPRRDSSVTAWVNVIYGCNERCTYCVVPNVRG 170

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG------EKCTFSDLLYSL 254
           +E SR+ + +  E  +L   G  E+TLLGQN++A  G+ L G       + T +DLLY +
Sbjct: 171 VEQSRTPAAIRAEIEELARQGYKEVTLLGQNIDA-YGRDLPGVTPEGRHQHTLTDLLYYI 229

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
            ++ G+ R+R+ TSHPR  ++ LI+A  +L  +  + H+P QSG + ILK+M R +T  +
Sbjct: 230 HDVPGIERIRFATSHPRYFTERLIRACAELPKVCEHFHIPFQSGDNDILKAMARGYTREK 289

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
           Y  II++IRS  PD +IS+D IVGFPGET+  F  T++LV+ +G+ Q  +  YSPR GTP
Sbjct: 290 YLGIIEKIRSYMPDASISADAIVGFPGETEAQFINTLELVETVGFDQLNTAAYSPRPGTP 349

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSP 433
            +    Q+ E VK++RL  L   + ++        +G+I  VL+E ++ K+  +++GR+ 
Sbjct: 350 AAQWQNQLPEEVKSDRLQRLNHLVAQKAADRTARYLGRIETVLVEDQNPKDPSQVMGRTQ 409

Query: 434 WLQSVVLNSKNHNI-GDIIKVRITDVKISTLYGELVV 469
             +          + G +I V+IT V+  +L GE ++
Sbjct: 410 GNRLTFFAGDMTQLRGQLIPVKITTVRPFSLSGEPLI 446


>gi|313901801|ref|ZP_07835224.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Thermaerobacter
           subterraneus DSM 13965]
 gi|313467921|gb|EFR63412.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Thermaerobacter
           subterraneus DSM 13965]
          Length = 518

 Score =  440 bits (1131), Expect = e-121,   Method: Composition-based stats.
 Identities = 185/446 (41%), Positives = 256/446 (57%), Gaps = 16/446 (3%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           + + ++GCQMN  DS  +       G      +DDADLI+LNTC +RE A EKV+  +G 
Sbjct: 59  YKILTWGCQMNERDSEILAGQLEEMGMVPAGLLDDADLILLNTCAVRETAEEKVFGTIGY 118

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQ--AEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           ++ LK        DL++ + GC+AQ  A    I R  P V++V G    ++LP+L+ER R
Sbjct: 119 LKVLKQK----NPDLILGLCGCMAQEEATIRRIQRYYPHVDLVFGTHNVHQLPQLIERVR 174

Query: 145 FGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             +  VVD   + E   E L        R  GV A++ I  GCDKFCTFC+VP TRG E 
Sbjct: 175 REEGMVVDVWQAAEGVVEHLP-----SRRAGGVKAWVNIIYGCDKFCTFCIVPTTRGRER 229

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR    V+ E   L   G  E+TLLGQNVN+  GK L G    F+DLL  L ++ G+  +
Sbjct: 230 SRRPEDVIAEVEYLAAEGYKEVTLLGQNVNS-YGKDL-GIGYDFADLLARLDQVPGIRWI 287

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           RYTTSHPRD SD LI+   + D +  + HLPVQSGS+++L+ MNRR+T   Y ++I++IR
Sbjct: 288 RYTTSHPRDFSDKLIRTIAESDKVTEHFHLPVQSGSNQVLRWMNRRYTREHYLRLIEKIR 347

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              PD  I++D IVGFP ET++DFR T+DLV ++ Y  AF+F YSPR GTP +    Q+ 
Sbjct: 348 EAVPDACITTDIIVGFPKETEEDFRQTLDLVRQVEYDNAFTFIYSPREGTPAARWP-QLP 406

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVLNS 442
             VK ERL  L +   E  +  N   VGQ   VLI+   K+  + L  R+   + V+++ 
Sbjct: 407 REVKQERLERLMEVQYEINLRKNKRLVGQRAVVLIDGPSKKNPQVLSARTRTNKLVLVSG 466

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
                G   +V IT  +  TL G L+
Sbjct: 467 DAAWAGRFARVEITRAQTFTLEGRLL 492


>gi|308372381|ref|ZP_07428457.2| tRNA-I(6)A37 thiotransferase enzyme MiaB [Mycobacterium
           tuberculosis SUMu004]
 gi|308333412|gb|EFP22263.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Mycobacterium
           tuberculosis SUMu004]
          Length = 498

 Score =  440 bits (1131), Expect = e-121,   Method: Composition-based stats.
 Identities = 169/466 (36%), Positives = 265/466 (56%), Gaps = 20/466 (4%)

Query: 9   GVAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLN 68
           GV    +    +    + + V++YGCQMNV+DS R+  +  + GY R     +AD++V N
Sbjct: 42  GVTGEGAGPPVRRAPARTYQVRTYGCQMNVHDSERLAGLLEAAGYRRATDGSEADVVVFN 101

Query: 69  TCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVV 128
           TC +RE A  ++Y  L  +   K +      D+ + V GC+AQ + + +LRR+P V+VV 
Sbjct: 102 TCAVRENADNRLYGNLSHLAPRKRA----NPDMQIAVGGCLAQKDRDAVLRRAPWVDVVF 157

Query: 129 GPQTYYRLPELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCD 187
           G      LP LLERAR  K   V+   +++     L       +R+    A+++I  GC+
Sbjct: 158 GTHNIGSLPTLLERARHNKVAQVEIAEALQQFPSSLP-----SSRESAYAAWVSISVGCN 212

Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG----E 243
             CTFC+VP  RG E+ RS + ++ E R L+++GV E+TLLGQNVNA+     D      
Sbjct: 213 NSCTFCIVPSLRGREVDRSPADILAEVRSLVNDGVLEVTLLGQNVNAYGVSFADPALPRN 272

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
           +  F++LL +  +I GL R+R+T+ HP + +D +I+A      + P LH+P+QSGSDRIL
Sbjct: 273 RGAFAELLRACGDIDGLERVRFTSPHPAEFTDDVIEAMAQTRNVCPALHMPLQSGSDRIL 332

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           ++M R + A  Y  II+R+R+  P  AI++D IVGFPGET++DF AT+D+V +  +A AF
Sbjct: 333 RAMRRSYRAERYLGIIERVRAAIPHAAITTDLIVGFPGETEEDFAATLDVVRRARFAAAF 392

Query: 364 SFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHG 422
           +F+YS R GTP + +  Q+ + V  ER   L     +  +  N A VGQ +EVL+    G
Sbjct: 393 TFQYSKRPGTPAAQLDGQLPKAVVQERYERLIALQEQISLEANRALVGQAVEVLVATGEG 452

Query: 423 KEK---GKLVGRSPWLQSVVLNS--KNHNIGDIIKVRITDVKISTL 463
           ++     ++ GR+   + V   +       GD+I  ++T+     L
Sbjct: 453 RKDTVTARMSGRARDGRLVHFTAGQPRVRPGDVITTKVTEAAPHHL 498


>gi|186681269|ref|YP_001864465.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Nostoc
           punctiforme PCC 73102]
 gi|229890579|sp|B2IT24|MIAB_NOSP7 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|186463721|gb|ACC79522.1| RNA modification enzyme, MiaB family [Nostoc punctiforme PCC 73102]
          Length = 454

 Score =  440 bits (1131), Expect = e-121,   Method: Composition-based stats.
 Identities = 180/458 (39%), Positives = 270/458 (58%), Gaps = 23/458 (5%)

Query: 21  CIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKV 80
               + + + ++GCQMN  DS RM  +    G+E     ++AD+I+ NTC IR+ A +KV
Sbjct: 2   TTSKRHYHITTFGCQMNKADSERMAGVLEDMGFEWSEDPNNADVILYNTCTIRDNAEQKV 61

Query: 81  YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140
           YS+LGR    K     +  DL ++VAGCVAQ EGE +LRR P +++V+GPQ   RL +LL
Sbjct: 62  YSYLGRQAKRK----HDQPDLTLIVAGCVAQQEGEALLRRVPELDLVMGPQHANRLKDLL 117

Query: 141 ERARFGKRVVDTD--YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
           E    G +VV T+  + +ED  +          R   VTA++ +  GC++ CT+CVVP  
Sbjct: 118 ESVFDGNQVVATESVHIIEDITQP--------RRDSKVTAWVNVIYGCNERCTYCVVPNV 169

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC------TFSDLLY 252
           RGIE SR+ S +  E  +L   G  EITLLGQN++A  G+ L G          F+DLLY
Sbjct: 170 RGIEQSRTPSAIRAEMEELGRQGYKEITLLGQNIDA-YGRDLPGTTPEGRHLHNFTDLLY 228

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
            + ++ G+ RLR+ TSHPR  ++ LIKA  +L  +  + H+P QSG + +LK+M R +T 
Sbjct: 229 YVHDVPGIERLRFATSHPRYFTERLIKACAELPKVCKHFHIPFQSGDNELLKAMARGYTH 288

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
            +YR+IID IR   PD +IS+D IVGFPGET+  F  T+ LV+ IG+    +  YSPR G
Sbjct: 289 EKYRRIIDTIRRYMPDASISADAIVGFPGETEAQFENTLKLVEDIGFDMLNTAAYSPRPG 348

Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGR 431
           TP +    Q+ E VK++RL  L      +    +    G+I EVL+E ++ K++ +++GR
Sbjct: 349 TPAALWDNQLSEEVKSDRLQRLNHLGNLKVAERSQRYFGRIEEVLVEDQNPKDQTQVMGR 408

Query: 432 SPWLQSVVLNSK-NHNIGDIIKVRITDVKISTLYGELV 468
           +   +    +       G ++KV+IT+V+  +L G+ V
Sbjct: 409 TDGNRLTFFSGDIKELKGQLVKVKITEVRPFSLTGQPV 446


>gi|298372633|ref|ZP_06982623.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacteroidetes oral taxon
           274 str. F0058]
 gi|298275537|gb|EFI17088.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacteroidetes oral taxon
           274 str. F0058]
          Length = 440

 Score =  440 bits (1131), Expect = e-121,   Method: Composition-based stats.
 Identities = 150/447 (33%), Positives = 248/447 (55%), Gaps = 11/447 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + ++  +++YGCQMNV DS  +  +  S GY+  ++  +AD I++NTC +R+ A +KV S
Sbjct: 1   MAKKLKIETYGCQMNVADSEVVAAIMLSDGYQMTDNEKEADTIIINTCSVRDNAEQKVIS 60

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            L    +L+    K   DL + V GC+A+   EE+L +   ++ V GP +Y  LP L+  
Sbjct: 61  RLQYFNSLR----KNNKDLNIGVIGCMAERMQEELLEKH-NIDFVAGPDSYLDLPNLVGA 115

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
              G++ ++   S  + ++ +     G    + +  F++I  GC+KFC++C+VPYTRG E
Sbjct: 116 VEKGEKAINIKLSKTETYKDVMPARIG----KSILGFVSIMRGCNKFCSYCIVPYTRGRE 171

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR +  +++E + L  NG  E+TLLGQNV+++      G    FS LL  ++     +R
Sbjct: 172 RSREVESIINEVKNLQANGYKEVTLLGQNVDSYLYNDGKGNATDFSQLLEKVALAVPDMR 231

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTS+P DM+D  ++       +  Y+HLPVQSGS++ LK M R++T  EY   I  I
Sbjct: 232 IRFTTSYPNDMTDQTLEVIAQYPNICRYIHLPVQSGSNKTLKLMKRKYTREEYLDRIAAI 291

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN-MLEQ 381
           R + P+ +I +D   GF  E++ DF  T+ L+ ++ +  AF FKYS R GT  +  + + 
Sbjct: 292 RRILPEASIGTDIFCGFSDESEQDFEDTLSLMREVRFDMAFMFKYSERPGTFAAKHLPDN 351

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVL 440
           + E VK  RL  +     +  ++ N   +G+  EVL+E + K       GR+   + V+ 
Sbjct: 352 IPEEVKIHRLNQIIALQNQLSLTSNLNDIGKTFEVLVEGYSKRSRDDFYGRTSQNKVVIF 411

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGEL 467
                 IGD+I V I     ++L GE+
Sbjct: 412 PKNGTKIGDLIDVTIHRATGASLIGEI 438


>gi|260494842|ref|ZP_05814972.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Fusobacterium sp. 3_1_33]
 gi|260198004|gb|EEW95521.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Fusobacterium sp. 3_1_33]
          Length = 435

 Score =  440 bits (1131), Expect = e-121,   Method: Composition-based stats.
 Identities = 157/445 (35%), Positives = 257/445 (57%), Gaps = 12/445 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +R  + +YGCQMNV +S +++ +F + GY+    +D+AD + LNTC +RE AA +++  L
Sbjct: 2   KRASIITYGCQMNVNESAKIKKIFQNLGYDITEEIDNADAVFLNTCTVREGAATQIFGKL 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           G ++ LK          ++ V GC AQ +GEE++++ PI+++V+G Q   R+P+ +E+  
Sbjct: 62  GELKALKEK-----RGTIIGVTGCFAQEQGEELVKKFPIIDIVMGNQNIGRIPQAIEKIE 116

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
             +   +     ED+                 TA ++I  GC+ FCTFC+VPY RG E S
Sbjct: 117 NNESTHEVYTDNEDEL----PPRLDAEFGSDQTASISITYGCNNFCTFCIVPYVRGRERS 172

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
             L ++V +  + +  G  EI LLGQNVN++     +G+   F+ LL  + ++KG   +R
Sbjct: 173 VPLEEIVKDVEQYVKKGAKEIVLLGQNVNSYGKDFKNGD--NFAKLLDEICKVKGDYIVR 230

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           + + HPRD +D +I      D +   LHLP+QSGS +IL+ M R +T  +Y  ++D+I+S
Sbjct: 231 FVSPHPRDFTDDVIDVIAKNDKISKCLHLPLQSGSSQILRKMGRGYTKEKYLALVDKIKS 290

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             P +A+++D IVGFPGET++DF  T+D+V K+ +  ++ F YS R GT  + M  Q+DE
Sbjct: 291 KIPGVALTADIIVGFPGETEEDFLDTIDVVQKVSFDNSYMFMYSIRKGTKAATMDNQIDE 350

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVLNSK 443
           +VK ERL  L +   +   + +     +I+ VL+E   K+  + L GR+   + V+    
Sbjct: 351 SVKKERLQRLMEVQNKCSFNESSKYKDKIVRVLVEGPSKKNKEVLSGRTSTNKIVLFKGN 410

Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468
               G  + V+I + K  TLYGE+V
Sbjct: 411 IALKGQFVNVKINECKTWTLYGEIV 435


>gi|325279819|ref|YP_004252361.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Odoribacter splanchnicus DSM 20712]
 gi|324311628|gb|ADY32181.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Odoribacter splanchnicus DSM 20712]
          Length = 443

 Score =  440 bits (1131), Expect = e-121,   Method: Composition-based stats.
 Identities = 161/447 (36%), Positives = 255/447 (57%), Gaps = 10/447 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + ++F++++YGCQMNV DS  +  +  + G+E     ++AD+I++NTC +RE A ++V  
Sbjct: 1   MVKKFYIETYGCQMNVADSEVVAAILTAAGFEHTTDKNEADVILVNTCSVRENAEQRVRG 60

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +     ++    K    LLV V GC+A+  G ++      VN+VVGP  Y  LP L+E+
Sbjct: 61  RVQGFSEIR----KRNPHLLVGVMGCMAERLGAKLFEEEKNVNIVVGPDAYMDLPLLIEQ 116

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           A  GK+ ++ + S  + ++ +            ++ F++I  GC+ FCT+C+VPYTRG E
Sbjct: 117 AAQGKKAINIELSTTETYKDICPSRIDET---AISGFVSIMRGCNNFCTYCIVPYTRGRE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SRS   +V E   L   G  E+TLLGQNVN++  K     +  F  LL  ++     +R
Sbjct: 174 RSRSPHSIVGEVIDLQRRGYKEVTLLGQNVNSYLYKDEQT-RVDFPALLELVARTVPDMR 232

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+ TSHP+DMSD  ++       +   +HLPVQSGS+ +LK MNR++T   Y   I  I
Sbjct: 233 IRFATSHPKDMSDKTLETIARWPNICKAIHLPVQSGSNSVLKDMNRKYTREWYLDRIAAI 292

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN-MLEQ 381
           R + PD  IS+D  VGF  E+++D+R T++L+ ++G+  A+ FKYS R GT  S  + + 
Sbjct: 293 RRIVPDCGISTDVFVGFHNESEEDYRQTLELMREVGFDLAYMFKYSERPGTQASKSLPDN 352

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRSPWLQSVVL 440
           +DE  K  RL  L        +  N   +G+  EVL+E   K+   ++ GRS   + +V 
Sbjct: 353 IDETTKGRRLQELIDLQTGWSLESNRRDIGKTFEVLVEGVSKKSSDEMFGRSSQNKVIVF 412

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGEL 467
            +KN  IG +I+V+I D   +TL GE+
Sbjct: 413 PAKNIPIGSLIQVKIKDCTSATLIGEI 439


>gi|160915264|ref|ZP_02077477.1| hypothetical protein EUBDOL_01272 [Eubacterium dolichum DSM 3991]
 gi|158433063|gb|EDP11352.1| hypothetical protein EUBDOL_01272 [Eubacterium dolichum DSM 3991]
          Length = 480

 Score =  440 bits (1131), Expect = e-121,   Method: Composition-based stats.
 Identities = 173/448 (38%), Positives = 259/448 (57%), Gaps = 20/448 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +++++++YGCQ N  DS  +  +  S  +   +   +AD+I+LNTC IR+ A +KV   L
Sbjct: 44  KKYYLRTYGCQANERDSETLAGILESMQFTPCSEPSEADVILLNTCAIRKNAEDKVLGEL 103

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEI----LRRSPIVNVVVGPQTYYRLPELL 140
           G ++ LK+    +  DL+  V GC+AQ   EEI    L +   V ++ G    +RLPELL
Sbjct: 104 GSLKRLKS----DKPDLIFAVCGCMAQE--EEIVTLLLEKYRHVQLIFGTHNIHRLPELL 157

Query: 141 ERAR-FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
                 GKRVV+      +  E L +      R     A++ I  GCDKFCT+C+VPYTR
Sbjct: 158 YEVMSEGKRVVEVLSKEGEVIENLPV-----RRFGKHKAWVNIMYGCDKFCTYCIVPYTR 212

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G E SR++  ++DE R L + G  E+TLLGQNVN+  GK   G    F+ LL   ++I G
Sbjct: 213 GKERSRAMEDILDEVRILKEEGYKEVTLLGQNVNS-YGKDA-GIVGGFASLLEETAKI-G 269

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           + R+R+TTSHP D +D +I      D +MP++HLPVQSG   ILK M RR+T  +Y  + 
Sbjct: 270 IERIRFTTSHPWDFTDEMIDVIARYDNIMPFIHLPVQSGDSEILKIMGRRYTREQYLTLF 329

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            +I+   P+ AIS+D I+GFP E+++ F  T+ LVD+  +  AF+F YSPR GTP + M 
Sbjct: 330 HKIKERMPNCAISTDIIIGFPNESEEQFENTLSLVDECQFDNAFTFIYSPREGTPAARMA 389

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSV 438
           + V   VK  RL  L ++  +     NDA +G+ + VL++   K+  + + G +   + V
Sbjct: 390 DNVSLEVKQHRLARLNERWNQYAKLKNDAYLGKTVRVLVDGASKKNDQIMSGYTETNKLV 449

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGE 466
              +K+   GDI+ V+IT  K  +L GE
Sbjct: 450 NFVAKDAKAGDIVTVKITGCKTFSLDGE 477


>gi|258627068|ref|ZP_05721864.1| conserved hypothetical protein [Vibrio mimicus VM603]
 gi|258580586|gb|EEW05539.1| conserved hypothetical protein [Vibrio mimicus VM603]
          Length = 453

 Score =  439 bits (1130), Expect = e-121,   Method: Composition-based stats.
 Identities = 189/428 (44%), Positives = 271/428 (63%), Gaps = 12/428 (2%)

Query: 44  MEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLL 102
           M D+   + GYE     ++AD+++LNTC IREKA EKV+  LGR + LK+ +      + 
Sbjct: 1   MADLLNAANGYELTEIPEEADVLLLNTCSIREKAQEKVFHQLGRWKTLKDKKPGVVIGVG 60

Query: 103 VVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK-RVVDTDYSVEDKFE 161
             V    A  EG+ I  R+P V+V+ GPQT +RLPE++++++  +  V+D  +   +KF+
Sbjct: 61  GCV----ATQEGDSIRDRAPYVDVIFGPQTLHRLPEMIKQSQISEAPVMDISFPEIEKFD 116

Query: 162 RLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNG 221
           RL        R  G TAF++I EGC K+CT+CVVPYTRG E+SR +  V+ E  +L + G
Sbjct: 117 RLP-----EPRAEGPTAFVSIMEGCSKYCTYCVVPYTRGEEVSRPMDDVLFEIAQLAEQG 171

Query: 222 VCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAH 281
           V E+ LLGQNVNA+RG   DGE C+F++LL  ++ I G+ R+R+TTSHP + +D +I  +
Sbjct: 172 VREVNLLGQNVNAYRGATHDGEICSFAELLRLVATIDGIDRIRFTTSHPLEFTDDIIAVY 231

Query: 282 GDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPG 341
            D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II ++R  RPDI ISSDFIVGFPG
Sbjct: 232 EDTPELVSFLHLPVQSGSDRILTMMKRPHTAIEYKSIIRKLRKARPDIQISSDFIVGFPG 291

Query: 342 ETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQ 401
           ETD DF+ TM L+  + +  +FSF +SPR GTP ++    + E VK ERL  LQ+++  Q
Sbjct: 292 ETDKDFQDTMKLIRDVDFDMSFSFIFSPRPGTPAADYPCDLSEEVKKERLYELQQQINSQ 351

Query: 402 QVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKI 460
            + ++   +G    +L+E   K+   +L GR+   + V        IG  + V+I DV  
Sbjct: 352 AMRYSRLMLGTEQRILVEGPSKKDLMELRGRTENNRVVNFEGSPELIGQFVDVKIVDVFA 411

Query: 461 STLYGELV 468
           ++L GELV
Sbjct: 412 NSLRGELV 419


>gi|261878931|ref|ZP_06005358.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella bergensis DSM
           17361]
 gi|270334514|gb|EFA45300.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella bergensis DSM
           17361]
          Length = 452

 Score =  439 bits (1130), Expect = e-121,   Method: Composition-based stats.
 Identities = 160/457 (35%), Positives = 265/457 (57%), Gaps = 16/457 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + ++ ++++YGCQMNV DS  +  +    GYE  ++ D+AD I LNTC IRE A  K+Y 
Sbjct: 1   MNKKLYIETYGCQMNVADSEVVASVMKMAGYELTDNEDEADAIFLNTCSIRENAENKIYH 60

Query: 83  FLGRI-----RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLP 137
            L  +     +    ++  +    ++ V GC+A+   +++++     N+V GP  Y  LP
Sbjct: 61  RLDALHAEQRKRAVETQNPKCPTPILGVLGCMAERVKDDLVKNH-HANLVCGPDAYLNLP 119

Query: 138 ELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197
           E++     G+  VD   S  + +  +     G NR  G   F++I  GC+ FC +C+VP+
Sbjct: 120 EMIAAVEMGQEAVDVQLSTTETYRDIIPQRIGGNRISG---FVSIMRGCNNFCHYCIVPF 176

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC----TFSDLLYS 253
           TRG E SR +  ++ E   L D G  E+TLLGQNVN+  G   +G++     +F++LL  
Sbjct: 177 TRGRERSRDVESILKEVHDLHDKGFKEVTLLGQNVNS-YGLLPNGKRPENGTSFAELLRL 235

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
           ++     +R+R+TTS+P DM++ +I+A  D   L  ++H PVQSGS +ILK MNR++T  
Sbjct: 236 VAREVPDMRVRFTTSNPEDMTEDIIQAVADEPNLCNHIHFPVQSGSSKILKLMNRKYTRE 295

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
           +Y + +  IR + PD  +++D  VG+  ET++D + T+DL+ ++G+  AF FKYS R GT
Sbjct: 296 DYLEKVAAIRRIIPDCGLTTDVFVGYHDETEEDHQMTLDLMREVGFDSAFMFKYSERPGT 355

Query: 374 PGSN-MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGR 431
             +  + + V E VK  RL  L +   +     N    G+  E+L+E+  K    +L+GR
Sbjct: 356 YAAKHLPDNVPEEVKVRRLNELIQLQTQISAEQNKKDEGKEFEILLERFSKRSRQQLMGR 415

Query: 432 SPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           +P  ++V+++   H+IG+ +KVRIT    +TL+GE +
Sbjct: 416 TPQNKAVLVDKGTHHIGETMKVRITGSSSATLFGEEI 452


>gi|288928957|ref|ZP_06422803.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella sp. oral taxon
           317 str. F0108]
 gi|288329941|gb|EFC68526.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella sp. oral taxon
           317 str. F0108]
          Length = 440

 Score =  439 bits (1130), Expect = e-121,   Method: Composition-based stats.
 Identities = 161/446 (36%), Positives = 256/446 (57%), Gaps = 10/446 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ ++++YGCQMNV DS  +  +    GYE      DAD I +NTC +RE A  K+Y+ L
Sbjct: 2   KKLYIETYGCQMNVADSEVVAAVMQMAGYEMCQDEADADAIFMNTCSVRENAENKIYNRL 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             +    ++  K+G  +++ V GC+A+   ++++       +V GP +Y  LP+++ +A 
Sbjct: 62  DTL----HAEQKKGRKVILGVLGCMAERVKDDLIENH-HAQLVAGPDSYLNLPDMIAQAE 116

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G + +D   S  + +  +        +  G   F++I  GCD FC +C+VPYTRG E S
Sbjct: 117 AGNKAIDIALSKTETYRDVVPKRVALAKISG---FVSIMRGCDNFCHYCIVPYTRGRERS 173

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R +  +++E R L   G  E+TLLGQNVN+++    +G+   F  LL  ++E    +R+R
Sbjct: 174 RDVDSILNEVRNLQQQGYKEVTLLGQNVNSYQFVNEEGQTIDFPQLLRLVAEAVPTMRIR 233

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           ++T HP+DMSD  ++   ++  +  ++HLP+QSGSD++LK MNR++T   Y   +  IR 
Sbjct: 234 FSTPHPKDMSDATLRVIAEVPNVCRHIHLPIQSGSDKVLKLMNRKYTVEWYLSRVKAIRE 293

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN-MLEQVD 383
           + PD  +S+D  VG+ GET+ D   ++ ++ ++GY  AF FKYS R GT  S  + + V 
Sbjct: 294 LVPDCGLSTDIFVGYHGETEADHEESLRIMREVGYDSAFMFKYSERPGTYASKHLPDDVP 353

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNS 442
           E+VK  RL  L     E     N A VG + EVL+E   K    +L GR+   + VV + 
Sbjct: 354 EDVKIRRLNELIMVQNENSARANHAEVGNVREVLVEGPSKRSREQLCGRTEQNKMVVFDK 413

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
            NH+IG+ +KVRIT    +TL GE V
Sbjct: 414 GNHHIGEYVKVRITGSTSATLLGEAV 439


>gi|323356750|ref|YP_004223146.1| 2-methylthioadenine synthetase [Microbacterium testaceum StLB037]
 gi|323273121|dbj|BAJ73266.1| 2-methylthioadenine synthetase [Microbacterium testaceum StLB037]
          Length = 515

 Score =  439 bits (1130), Expect = e-121,   Method: Composition-based stats.
 Identities = 162/462 (35%), Positives = 256/462 (55%), Gaps = 18/462 (3%)

Query: 13  MVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHI 72
             S        P+ + V+++GCQMNV+DS R+     S GY R ++  +AD+IV+NTC +
Sbjct: 12  APSPAAHGASGPRTYEVRTFGCQMNVHDSERLSGSLESAGYVRADAGAEADVIVINTCAV 71

Query: 73  REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT 132
           R+ AA K+Y  LG +++ K++       + + V GC+AQ + + + +++P V+VV G   
Sbjct: 72  RDNAAGKLYGTLGHLKSRKDAHA----GMQIAVGGCLAQMDKDAVQQKAPWVDVVFGTHN 127

Query: 133 YYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTF 192
              LP +LERAR             + F           R    + +++I  GC+  CTF
Sbjct: 128 MGSLPGMLERARHNGEAELEILESLEIFPSTLPT----KRDSVHSGWVSISVGCNNTCTF 183

Query: 193 CVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLY 252
           C+VP  RG E  R    +++E R L+D+G  E+TLLGQNVN++  +   G++  F  LL 
Sbjct: 184 CIVPSLRGKEKDRRPGDILNEIRLLVDDGAIEVTLLGQNVNSYGVEF--GDRLAFGKLLR 241

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
           +  EI+GL R+R+T+ HP   +D +I A  +   +MP LH+P+QSGSDRILK+M R + +
Sbjct: 242 AAGEIEGLERIRFTSPHPAAFTDDVIAAMAETPAVMPQLHMPLQSGSDRILKAMRRSYRS 301

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
            ++  I+DR+R   P  AI++D IVGFPGET++DF+ T+ +V+   ++ AF+F+YS R G
Sbjct: 302 EKFLGILDRVRERIPHAAITTDIIVGFPGETEEDFQETLRVVEAARFSSAFTFQYSIREG 361

Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKG---KL 428
           TP + M +QV + V  ER   L           N   +G+ +EVL+    GK+     +L
Sbjct: 362 TPAATMADQVPKAVVQERYERLIALQDRIAAEENQKQLGRSLEVLVSAGEGKKDAETHRL 421

Query: 429 VGRSPWLQSVVLN----SKNHNIGDIIKVRITDVKISTLYGE 466
            GR+   + V       S     GD++ V +T      L  +
Sbjct: 422 TGRAEDNRLVHFELPKGSPVPRPGDVVSVTVTHAAPFHLLAD 463


>gi|332710909|ref|ZP_08430845.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Lyngbya majuscula 3L]
 gi|332350223|gb|EGJ29827.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Lyngbya majuscula 3L]
          Length = 448

 Score =  439 bits (1130), Expect = e-121,   Method: Composition-based stats.
 Identities = 182/455 (40%), Positives = 276/455 (60%), Gaps = 23/455 (5%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+R+ + ++GCQMN  DS RM  +    G++   + ++ADLIV NTC IR+ A +KVYS+
Sbjct: 5   PRRYHITTFGCQMNKADSERMAGILEDIGFQWSENPNEADLIVYNTCTIRDNAEQKVYSY 64

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR    K+ +     DL +VVAGCVAQ EGE +LRR P V++V+GPQ   RL +LL++ 
Sbjct: 65  LGRQAKRKHQQ----PDLTLVVAGCVAQQEGEALLRRVPEVDLVMGPQHANRLGDLLDQV 120

Query: 144 RFGKRVVDTD--YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
             G ++V T+  + VED  +          R   ++A++ I  GC++ C++CVVP  RG+
Sbjct: 121 FDGNQLVATEPIHIVEDITKP--------RRDSSISAWVNIIYGCNERCSYCVVPNVRGL 172

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG------EKCTFSDLLYSLS 255
           E SR+   +  E  +L   G  EITLLGQN++A  G+ L G       + T +DLLY +S
Sbjct: 173 EQSRTPEAIRAEMEELGRLGYKEITLLGQNIDA-YGRDLPGVTESGRHQHTLTDLLYYVS 231

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
            + G+ RLR+ TSHPR   + LI+A  +L  +  + H+P QSG + ILK+M R +T  +Y
Sbjct: 232 NVPGIERLRFATSHPRYFVERLIRACHELPEVCEHFHIPFQSGDNDILKAMARGYTHQKY 291

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
           R+II+ IR   PD +IS+D IVGFPGET+  F  T+ LV+ IG+ Q  +  YSPR GTP 
Sbjct: 292 RRIINTIRDYMPDASISADAIVGFPGETEAQFENTLKLVEDIGFDQLNTAAYSPRPGTPA 351

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSPW 434
           +    Q+ E VK +RL  L   +  +    +   +G+I EVL+E ++ K+  +++GR+  
Sbjct: 352 ALWENQLSEEVKCDRLQRLNHLVAVKAAERSQRYLGRIEEVLVEDQNPKDNTQVMGRTKG 411

Query: 435 LQSVVLNSK-NHNIGDIIKVRITDVKISTLYGELV 468
            +    +   NH  G+++ V+IT+ +  +L GE V
Sbjct: 412 NRLTFFSGDINHLKGELVLVKITEARAFSLTGERV 446


>gi|148653672|ref|YP_001280765.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Psychrobacter
           sp. PRwf-1]
 gi|229890621|sp|A5WGM4|MIAB_PSYWF RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|148572756|gb|ABQ94815.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Psychrobacter sp. PRwf-1]
          Length = 490

 Score =  439 bits (1130), Expect = e-121,   Method: Composition-based stats.
 Identities = 193/470 (41%), Positives = 291/470 (61%), Gaps = 26/470 (5%)

Query: 14  VSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHI 72
            SQ   Q    ++ ++ + GCQMNVYDS +M ++   S      +++++AD++++NTC I
Sbjct: 28  ASQPTGQ--AKKKVYIATQGCQMNVYDSEKMGNVLGDSHDMVVTDNIEEADVLLMNTCSI 85

Query: 73  REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT 132
           REKA EKV+S LGR R LK        DL++ V GCVA  EG+ I +R+P V++V GPQT
Sbjct: 86  REKAQEKVFSELGRWRKLKEE----KPDLVIGVGGCVASQEGDNIQKRAPYVDMVFGPQT 141

Query: 133 YYRLPELLERARFGKRV--------VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQE 184
            +RLPEL +++   + V        VD  +   +KF+ L        +  G  AF++I E
Sbjct: 142 LHRLPELYDKSTTQRNVKPKDRIGTVDVSFPSIEKFDFLP-----EPKVEGYRAFVSIME 196

Query: 185 GCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK 244
           GC K+C+FCVVPYTRG E+SR L  V+ E   L + GV EITLLGQNVN +RG+  DG  
Sbjct: 197 GCSKYCSFCVVPYTRGEELSRPLDDVLAEIDSLAEQGVREITLLGQNVNGYRGEKDDGSI 256

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304
           C F++LL+ ++ + G+ R+RYTTSHP + +D +I+A+  L  L+ +LHLPVQSGS++IL 
Sbjct: 257 CRFAELLHYVAHVDGIERIRYTTSHPLEFTDDIIEAYAKLPQLVSHLHLPVQSGSNKILA 316

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
           +M R HT   Y   I+++ +VRPD+ +SSDFI+GFPGET++DF  T++L   + +  ++S
Sbjct: 317 AMKRNHTIDVYINQINKLMAVRPDMHLSSDFIIGFPGETEEDFLDTLNLAKALDFDHSYS 376

Query: 365 FKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKH-GK 423
           F YS R GTP S + + V    K ERL   QK +R+  +   +  VG+ + V++E+   +
Sbjct: 377 FIYSKRPGTPASELPDDVSLATKKERLAIFQKVIRDSTLKKTEEMVGKTLRVMVEEIADR 436

Query: 424 EKGKLVGRSPWLQSVVLNSKN----HNIGDIIKVRITD-VKISTLYGELV 468
              +L+G +   +SV+  +        +G  + V+ITD V    + GELV
Sbjct: 437 YPDQLLGTADNTRSVLFKATEQQKTDLMGKFVTVKITDFVSPHMVRGELV 486


>gi|297156736|gb|ADI06448.1| adenosine tRNA methylthiotransferase [Streptomyces bingchenggensis
           BCW-1]
          Length = 497

 Score =  439 bits (1130), Expect = e-121,   Method: Composition-based stats.
 Identities = 177/455 (38%), Positives = 255/455 (56%), Gaps = 24/455 (5%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVN------SMDDADLIVLNTCHIREKAAE 78
           + + V++YGCQMNV+DS R+  +    GY R            AD++V NTC +RE A  
Sbjct: 2   KTYEVRTYGCQMNVHDSERLSGLLEEAGYVRAPEGVGEGDEAFADVVVFNTCAVRENADN 61

Query: 79  KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPE 138
           ++Y  LGR+  +K  R      + + V GC+AQ + + I++++P V+VV G      LP 
Sbjct: 62  RLYGNLGRLAPIKARR----PGMQIAVGGCLAQKDRDTIVKKAPWVDVVFGTHNIGSLPV 117

Query: 139 LLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197
           LLERAR  +   V+   S+E     L        R+    A+++I  GC+  CTFC+VP 
Sbjct: 118 LLERARIQEEAQVEIAESLEAFPSTLPT-----RRESAYAAWVSISVGCNNTCTFCIVPA 172

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257
            RG E  R    ++ E   L+  GV EITLLGQNVNA  G  + G++  FS LL +   +
Sbjct: 173 LRGKEKDRRPGDILAEVETLVAEGVSEITLLGQNVNA-YGSDI-GDREAFSKLLRACGNV 230

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
            GL R+R+T+ HPRD +D +I A  + + +MP LH+P+QSGSD +LK+M R +    Y  
Sbjct: 231 SGLERVRFTSPHPRDFTDDVIAAMAETENVMPQLHMPLQSGSDTVLKAMRRSYRQERYLG 290

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
           II+++R+  PD AIS+D IVGFPGETD DF  T+ +V +  +AQAF+F+YS R GTP + 
Sbjct: 291 IIEKVRAAMPDAAISTDIIVGFPGETDADFEQTLHVVREARFAQAFTFQYSKRPGTPAAE 350

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKG---KLVGRSP 433
           M  QV + V  ER   L     E     N   VG+ +EVL+ E  G++ G   +L GR+P
Sbjct: 351 MDGQVPKAVVQERYERLVALQEEISWEENKKQVGRTVEVLVAEGEGRKDGATHRLSGRAP 410

Query: 434 WLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGE 466
             + V        +  GD++ V IT      L  E
Sbjct: 411 DNRLVHFARPEERVRPGDVVTVDITYAAPHHLLAE 445


>gi|298493062|ref|YP_003723239.1| MiaB family RNA modification protein ['Nostoc azollae' 0708]
 gi|298234980|gb|ADI66116.1| RNA modification enzyme, MiaB family ['Nostoc azollae' 0708]
          Length = 453

 Score =  439 bits (1130), Expect = e-121,   Method: Composition-based stats.
 Identities = 182/454 (40%), Positives = 269/454 (59%), Gaps = 19/454 (4%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + +R+ + ++GCQMN  DS RM  +    G+E     +DA++I+ NTC IRE A +KVYS
Sbjct: 3   MNRRYHITTFGCQMNKADSERMAGILEKMGFEWSEDPNDANVILYNTCTIRENAEQKVYS 62

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
           +LGR    K+ R     DL +VVAGCVAQ EGE +LRR P +++V+GPQ   RL +LLE 
Sbjct: 63  YLGRQAKRKHER----PDLTLVVAGCVAQQEGEALLRRVPELDLVMGPQHANRLEDLLES 118

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
              G +VV T+     +            R   VTA++ +  GC++ CT+CVVP  RG+E
Sbjct: 119 VFDGNQVVATEEVHILEDITQP------RRDSQVTAWVNVIYGCNERCTYCVVPNVRGVE 172

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC------TFSDLLYSLSE 256
            SR+ + +  E  +L   G  E+TLLGQN++A  G+ L G         T +DLLY + +
Sbjct: 173 QSRTPTAIRAEMEELGRKGYKEVTLLGQNIDA-YGRDLPGTTPEGRHLHTLTDLLYYVHD 231

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           + G+ RLR+ TSHPR  ++ LIKA  +L  +  + H+P QSG ++ILK M+R +T  +YR
Sbjct: 232 VPGIERLRFATSHPRYFTERLIKACAELPKVCEHFHIPFQSGDNQILKGMSRGYTHEKYR 291

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
           +IID IR   PD +IS D IVGFPGE ++ F  T+ LVD IG+    +  YSPR GTP +
Sbjct: 292 RIIDTIRRYMPDASISGDAIVGFPGEREEQFENTLKLVDDIGFDLLNTAAYSPRPGTPAA 351

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSPWL 435
               Q+ E VK+ERL  L   +  +    +    G++ EVL+E ++ K+  +++GR+   
Sbjct: 352 LWDNQLSEEVKSERLQRLNHLVNVKAAERSQRYFGRVEEVLVEDQNTKDNTQVMGRTGGN 411

Query: 436 QSVVLNSK-NHNIGDIIKVRITDVKISTLYGELV 468
           +        N   G I+KV+IT+V+  +L GE +
Sbjct: 412 RLTFFTGDINELKGQIVKVKITEVRPFSLTGEPI 445


>gi|120437909|ref|YP_863595.1| tRNA-i(6)A37 modification enzyme MiaB [Gramella forsetii KT0803]
 gi|229890549|sp|A0M7D3|MIAB_GRAFK RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|117580059|emb|CAL68528.1| tRNA-i(6)A37 modification enzyme MiaB [Gramella forsetii KT0803]
          Length = 481

 Score =  439 bits (1130), Expect = e-121,   Method: Composition-based stats.
 Identities = 165/459 (35%), Positives = 254/459 (55%), Gaps = 22/459 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F++SYGC MN  DS  +  +   +G+    ++++ADL+++NTC IREKA + V   L
Sbjct: 24  RKLFIESYGCAMNFSDSEIVASILSKEGFNTTQNLEEADLVLVNTCSIREKAEQTVRKRL 83

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            +   +K    +    + V V GC+A+   ++ L    IV++VVGP  Y  LP L+    
Sbjct: 84  EKYNAVK----RINPGMKVGVLGCMAERLKDKFLEEEKIVDLVVGPDAYKDLPNLINEVE 139

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G+  ++   S E+ +  +S V        GV+AF++I  GCD  CTFCVVP+TRG E S
Sbjct: 140 EGRDAINVILSKEETYGDISPVRLQ---SNGVSAFVSITRGCDNMCTFCVVPFTRGRERS 196

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK-------------CTFSDLL 251
           R    +V+E   L   G  EITLLGQNV+++   G   +K               F+ LL
Sbjct: 197 RDPQSIVEEVNDLAAKGYKEITLLGQNVDSYLWYGGGLKKDFKNATEIQKATATNFAALL 256

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
             ++E +  +R+R++TS+P+DM+  +I+A      +  Y+HLPVQSGSDRILK MNR HT
Sbjct: 257 KLVAEAQPKMRIRFSTSNPQDMTLDVIEAMAAYRNICNYIHLPVQSGSDRILKKMNRLHT 316

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
             EY  +ID I+ + P+  IS D I GFP ET++D + T+ L++ + Y   + F YS R 
Sbjct: 317 REEYFTLIDNIKKMIPNCGISHDLITGFPTETEEDHQDTLSLMEYVKYDFGYMFTYSERP 376

Query: 372 GTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLV 429
           GT     + + + E  K  RL  +    ++      ++ +G  +EVLIEK  K+      
Sbjct: 377 GTTAERKLEDDIPEETKKRRLQEIVDLQQKHSKQNTNSVIGTTVEVLIEKESKKSNKHWS 436

Query: 430 GRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           GR+      V + +N+ IGD +KV+I D   +TL GE +
Sbjct: 437 GRNERNTVTVFSKENYQIGDFVKVKIHDCTSATLIGEPI 475


>gi|256424882|ref|YP_003125535.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Chitinophaga
           pinensis DSM 2588]
 gi|256039790|gb|ACU63334.1| RNA modification enzyme, MiaB family [Chitinophaga pinensis DSM
           2588]
          Length = 473

 Score =  439 bits (1129), Expect = e-121,   Method: Composition-based stats.
 Identities = 166/445 (37%), Positives = 257/445 (57%), Gaps = 11/445 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++F+++SYGCQMN  DS  +  +   +G+    ++++A L++LNTC IREKA   V   L
Sbjct: 30  KKFYIESYGCQMNFNDSEIVASILKEEGFGPTRNVEEASLVLLNTCSIREKAETTVRKRL 89

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
              R +K        +LLV V GC+A+    ++L    +V++VVGP  Y  LP L+E A 
Sbjct: 90  TEFRKIKQR----NPELLVGVLGCMAERLKAKLLEEEKLVDMVVGPDAYRTLPALIEEAE 145

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G++ V+   S E+ +  +S V        GVTAF++I  GC+  C+FCVVP+TRG E S
Sbjct: 146 TGQKAVNVLLSREETYGDISPVRLD---SNGVTAFVSIMRGCNNMCSFCVVPFTRGRERS 202

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG--KGLDGEKCTFSDLLYSLSEIKGLVR 262
           R  + ++ EA  + + G  E+TLLGQNV+++       D +  TF++LL +++ I  L+R
Sbjct: 203 RDKASILQEATDMFNRGYREVTLLGQNVDSYYWVSPDNDNDITTFANLLEAVALISPLLR 262

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R++TSHP+D++D ++      + +  Y+HLP+QSGS RIL+ MNR +T   Y + +DRI
Sbjct: 263 VRFSTSHPKDITDDVLYTMAKYENICKYIHLPMQSGSTRILQLMNRTYTREWYIKKVDRI 322

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML-EQ 381
           R + P  A+S+D I GF  ET++D + TM L+D   Y  A+ F YS R GT  +    + 
Sbjct: 323 REILPGCALSTDVITGFCTETEEDHQDTMTLMDYGQYDLAYMFFYSERPGTLAARRYQDD 382

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRSPWLQSVVL 440
           V E VK  RL  +    R Q +      VG+  +VLIE   K  + +L GR+   + VV 
Sbjct: 383 VPEEVKKRRLSEIVDLHRAQSLKSMQQDVGKTFKVLIEGVSKRSEDQLFGRTDHNKVVVF 442

Query: 441 NSKNHNIGDIIKVRITDVKISTLYG 465
             ++   G+ I V++ D    TL G
Sbjct: 443 PKEDFRKGEYIWVKVEDCTAGTLLG 467


>gi|124023692|ref|YP_001017999.1| (dimethylallyl)adenosine tRNA methylthiotransferase
           [Prochlorococcus marinus str. MIT 9303]
 gi|229890600|sp|A2CB74|MIAB_PROM3 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|123963978|gb|ABM78734.1| 2-methylthioadenine synthetase [Prochlorococcus marinus str. MIT
           9303]
          Length = 480

 Score =  439 bits (1129), Expect = e-121,   Method: Composition-based stats.
 Identities = 175/475 (36%), Positives = 271/475 (57%), Gaps = 23/475 (4%)

Query: 5   IKLIGVAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADL 64
           + L+  + + +           F+++++GCQMN  DS RM  +  + GY    +  +ADL
Sbjct: 9   LALVATSALATNPATTAQHQGSFWIQTFGCQMNKADSERMAGILEAMGYHEAPAELEADL 68

Query: 65  IVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIV 124
           ++ NTC IR+ A +KVYS+LGR    K    +    L +VVAGCVAQ EGE +LRR P +
Sbjct: 69  VLYNTCTIRDNAEQKVYSYLGRQARRK----RTHPHLKLVVAGCVAQQEGEALLRRIPEL 124

Query: 125 NVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQE 184
           ++V+GPQ   RL  LL +   G++VV TD +     E L+       R   + A++ +  
Sbjct: 125 DLVMGPQHANRLEALLTQVDNGQQVVATDDN--HILEDLTTAR----RDSTICAWVNVIY 178

Query: 185 GCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG-- 242
           GC++ CT+CVVP  RG E SRS   +  E   L   G  EITLLGQN++A  G+ L G  
Sbjct: 179 GCNERCTYCVVPSVRGKEQSRSPEAIRLEIEGLAARGFREITLLGQNIDA-YGRDLPGIT 237

Query: 243 ----EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
                + T +DLL+ + +++G+ R+R+ TSHPR  ++ LI+A  DL  +  + H+P QSG
Sbjct: 238 PEGRRQNTLTDLLHHIHDVEGIERIRFATSHPRYFTERLIEACFDLPKVCEHFHIPFQSG 297

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
            + +LK+M R +T   YR+I++RIR + PD AIS+D IV FPGETD  F+ T++LV+++G
Sbjct: 298 DNDVLKAMARGYTVERYRRIVNRIRELMPDAAISTDVIVAFPGETDAQFQNTLNLVEEVG 357

Query: 359 YAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI 418
           + Q  +  YSPR  TP +    Q+ E VK ERL  L   +    +  N    G++ +VL 
Sbjct: 358 FDQVNTAAYSPRPNTPAATWSNQLPEVVKVERLKQLNALVERVALQRNSRYSGKVEQVLA 417

Query: 419 EKHG-KEKGKLVGRSPWLQSVVLNSK-----NHNIGDIIKVRITDVKISTLYGEL 467
           E    K+  +L+GR+   +     ++      ++ GD++ V+I  V+  +L G  
Sbjct: 418 EGINPKKPQQLMGRTRTNRLTFFAAEGPQSCRYSPGDLVDVQINSVRAFSLSGTP 472


>gi|33862596|ref|NP_894156.1| (dimethylallyl)adenosine tRNA methylthiotransferase
           [Prochlorococcus marinus str. MIT 9313]
 gi|81577894|sp|Q7V8L8|MIAB_PROMM RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|33634512|emb|CAE20498.1| conserved hypothetical protein [Prochlorococcus marinus str. MIT
           9313]
          Length = 480

 Score =  439 bits (1129), Expect = e-121,   Method: Composition-based stats.
 Identities = 174/475 (36%), Positives = 271/475 (57%), Gaps = 23/475 (4%)

Query: 5   IKLIGVAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADL 64
           + L+  + + S           F+++++GCQMN  DS RM  +  + GY    +  +ADL
Sbjct: 9   LALVATSAIASNPATTAQHQGSFWIQTFGCQMNKADSERMAGILEAMGYHEAPAELEADL 68

Query: 65  IVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIV 124
           ++ NTC IR+ A +KVYS+LGR    K    +    L +VVAGCVAQ EGE +LRR P +
Sbjct: 69  VLYNTCTIRDNAEQKVYSYLGRQARRK----RTHPHLKLVVAGCVAQQEGEALLRRIPEL 124

Query: 125 NVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQE 184
           ++V+GPQ   RL  LL +   G++VV TD +     E L+       R   + A++ +  
Sbjct: 125 DLVMGPQHANRLEALLTQVDNGQQVVATDDN--HILEDLTTAR----RDSTICAWVNVIY 178

Query: 185 GCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG-- 242
           GC++ CT+CVVP  RG E SRS   +  E   L   G  EITLLGQN++A  G+ L G  
Sbjct: 179 GCNERCTYCVVPSVRGKEQSRSPEAIRLEIEGLAARGFREITLLGQNIDA-YGRDLPGIT 237

Query: 243 ----EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
                + T +DLL+ + +++G+ R+R+ TSHPR  ++ LI+A  DL  +  + H+P QSG
Sbjct: 238 PEGRRQNTLTDLLHHIHDVEGIERIRFATSHPRYFTERLIEACFDLPKVCEHFHIPFQSG 297

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
            + +LK+M R +T   YR+I++RIR + PD AIS+D IV FPGETD  F+ T++L++++G
Sbjct: 298 DNDVLKAMARGYTVERYRRIVNRIRELMPDAAISTDVIVAFPGETDAQFQNTLNLLEEVG 357

Query: 359 YAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI 418
           + Q  +  YSPR  TP +    Q+ E VK ERL  L   +    +  N    G++ +VL 
Sbjct: 358 FDQVNTAAYSPRPNTPAATWSNQLPEAVKVERLKQLNALVERIALQRNSRYSGKVEQVLA 417

Query: 419 EKHG-KEKGKLVGRSPWLQSVVLNSK-----NHNIGDIIKVRITDVKISTLYGEL 467
           E    K+  +L+GR+   +     ++      ++ GD++ ++I  V+  +L G  
Sbjct: 418 EGINPKKPQQLMGRTRTNRLTFFATEGPQGCRYSPGDLVDIQINSVRAFSLSGTP 472


>gi|220912233|ref|YP_002487542.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Arthrobacter
           chlorophenolicus A6]
 gi|219859111|gb|ACL39453.1| RNA modification enzyme, MiaB family [Arthrobacter chlorophenolicus
           A6]
          Length = 509

 Score =  439 bits (1129), Expect = e-121,   Method: Composition-based stats.
 Identities = 164/458 (35%), Positives = 253/458 (55%), Gaps = 19/458 (4%)

Query: 18  VDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA 77
           + +    + + V+++GCQMNV+DS RM  M    GY      D AD++V NTC +RE A 
Sbjct: 13  LSREATARTYQVRTFGCQMNVHDSERMAGMLEDAGYVPA-DGDRADVVVFNTCAVRENAD 71

Query: 78  EKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLP 137
            K+Y  LG +  +K +       + + V GC+AQ + E IL+++P V+ V G      LP
Sbjct: 72  NKLYGNLGILAPVKAA----NPGMQIAVGGCLAQKDRETILKKAPWVDAVFGTHNVGALP 127

Query: 138 ELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197
            LLERAR             D F           R      +++I  GC+  CTFC+VP 
Sbjct: 128 ALLERARHNDEAQLEILESLDVFPSTLPT----KRDSVYAGWVSISVGCNNTCTFCIVPA 183

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257
            RG E  R    ++ E + L+D+G  E+TLLGQNVN++  +   G++  FS LL +  +I
Sbjct: 184 LRGKEKDRRPGDILAEVQALVDDGAIEVTLLGQNVNSYGVEF--GDRQAFSKLLRACGDI 241

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
           +GL R+R+T+ HP   +D +I A  +   +MP LH+P+QSGSD ILK+M R + + ++  
Sbjct: 242 EGLERVRFTSPHPAAFTDDVIDAMAETPNVMPQLHMPLQSGSDGILKAMKRSYRSTKFLG 301

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
           I+D++R   P  AIS+D IVGFPGET++DF+AT+D+V+K  +A AF+F+YS R GTP ++
Sbjct: 302 ILDKVRDKIPHAAISTDIIVGFPGETEEDFQATLDVVEKSRFATAFTFQYSKRPGTPAAD 361

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE----KHGKEKGKLVGRSP 433
           + +Q+ + V  ER   L           N   +G+ +EV++     +  +E  +L GRS 
Sbjct: 362 LPDQLPKAVVQERFERLTALQDRIAAEENKKQLGRRVEVMVTAQSGRKAEETHRLSGRSR 421

Query: 434 WLQSVVLN----SKNHNIGDIIKVRITDVKISTLYGEL 467
             + V  +    +     GD++ V ITD     L  + 
Sbjct: 422 DQRLVHFSVPAGAPAPRPGDLVTVTITDAGAFHLIADP 459


>gi|332670088|ref|YP_004453096.1| RNA modification enzyme, MiaB family [Cellulomonas fimi ATCC 484]
 gi|332339126|gb|AEE45709.1| RNA modification enzyme, MiaB family [Cellulomonas fimi ATCC 484]
          Length = 522

 Score =  439 bits (1129), Expect = e-121,   Method: Composition-based stats.
 Identities = 170/473 (35%), Positives = 266/473 (56%), Gaps = 27/473 (5%)

Query: 10  VAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVN----SMDDADLI 65
                + + D   VP+ + VK+ GCQMNV+DS  M  M    GY   +    + +DAD+I
Sbjct: 4   TLPAPTPLADATDVPRTYLVKTLGCQMNVHDSEHMAGMLEQAGYVPASPADAAAEDADVI 63

Query: 66  VLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVN 125
           V+NTC +RE AA+K+Y  LGR+   K +R      + + V GC+AQ +   I+ R+P V+
Sbjct: 64  VINTCAVRENAADKLYGNLGRLAGTKRAR----PGMQIAVGGCLAQKDRTGIVERAPWVD 119

Query: 126 VVVGPQTYYRLPELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQE 184
           VV G      LP LLERAR  ++  V+   S++     L        R+     +++I  
Sbjct: 120 VVFGTHNLDVLPVLLERARHNQKAEVEIAESLQVFPSTLPT-----RRESVYAGWVSISV 174

Query: 185 GCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK 244
           GC+  CTFC+VP+ RG E  R   +++ E   L+  G  E+TLLGQNVN++  +   G++
Sbjct: 175 GCNNTCTFCIVPHLRGKERDRRPGEILAEVEALVQQGAIEVTLLGQNVNSYGVEF--GDR 232

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304
             F+ LL +   ++GL RLR+T+ HP   +D +I+A      +MP LH+P+QSGSDR+L+
Sbjct: 233 GAFAKLLRAAGAVEGLERLRFTSPHPAAFTDDVIEAMAATPTVMPQLHMPLQSGSDRVLR 292

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
           +M R + +  +  I+DR+R+  PD AI++D IVGFPGET++DF  T+ +V+   ++ AF+
Sbjct: 293 AMRRSYRSERFLGILDRVRAAMPDAAITTDVIVGFPGETEEDFAETLRVVEASRFSSAFT 352

Query: 365 FKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGK 423
           F+YSPR GTP +++ +Q+ + V  ER   L        +  N A VG+ +EVL+ E  G+
Sbjct: 353 FQYSPRPGTPAADLPDQLPKAVVQERYERLVALQERISLEENRAQVGRTVEVLVAEGEGR 412

Query: 424 EKG---KLVGRSPWLQSVVL-------NSKNHNIGDIIKVRITDVKISTLYGE 466
           + G   +L GR+   + V L              GD++ V +T      L  +
Sbjct: 413 KDGVTERLSGRAQDNRLVHLALPAGLAPHDAPRPGDVVTVTVTHGAPHHLVAD 465


>gi|326384493|ref|ZP_08206173.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Gordonia
           neofelifaecis NRRL B-59395]
 gi|326196838|gb|EGD54032.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Gordonia
           neofelifaecis NRRL B-59395]
          Length = 521

 Score =  439 bits (1129), Expect = e-121,   Method: Composition-based stats.
 Identities = 165/472 (34%), Positives = 250/472 (52%), Gaps = 24/472 (5%)

Query: 11  AHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC 70
           A   + I D     + + V+++GCQMNV+DS R+  +    GY      DDADL+V NTC
Sbjct: 5   APGEATIEDATGGVRSYSVRTFGCQMNVHDSERIAGLLEDAGYVAAVDGDDADLVVFNTC 64

Query: 71  HIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGP 130
            +RE A  K+Y  L  +  +K     +   + + V GC+AQ + + + +R+P V+VV G 
Sbjct: 65  AVRENADNKLYGNLSHLAPVKA----DRPGMQIAVGGCLAQKDKDTVRKRAPWVDVVFGT 120

Query: 131 QTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190
                LP LLERAR             ++F           R    + ++++  GC+  C
Sbjct: 121 HNIGSLPVLLERARHNDEAQVEILDSLERFPSTLPAR----RDSAYSGWVSVSVGCNNTC 176

Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT---- 246
           TFC+VP  RG E+ R    V+ E + L+D GV E+TLLGQNVNA+     D E       
Sbjct: 177 TFCIVPSLRGKEVDRRPGDVLAEVQALVDQGVLEVTLLGQNVNAYGQSFADPETPRNRGA 236

Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306
           F+DLL +   I+GL R+R+T+ HP + +D +I A  +   + P LH+P+QSGSDR+L++M
Sbjct: 237 FADLLRACGTIEGLERVRFTSPHPAEFTDDVIAAMAETPNICPQLHMPLQSGSDRVLRAM 296

Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
            R +   ++  I+DR+R   P  AI++D IVGFPGET++DF  T+D+V+K  ++ AF+F+
Sbjct: 297 RRSYRRTKFLGILDRVREAMPHAAITTDIIVGFPGETEEDFAETLDVVEKARFSSAFTFQ 356

Query: 367 YSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE----KHG 422
           YSPR GTP + M +QV   V  ER   L        +  N A VG   E+L+     +  
Sbjct: 357 YSPRPGTPAATMPDQVPPEVVTERYQRLIALQERICLEGNTALVGTEAELLVVADEGRKS 416

Query: 423 KEKGKLVGRSPWLQSVVLNSK--------NHNIGDIIKVRITDVKISTLYGE 466
              G++ GR+   + V   +             GD++   ITD     L  +
Sbjct: 417 SSTGRMTGRARDGRLVHFRADSRSQVEPGGIRPGDLVTAVITDAAPHHLIAD 468


>gi|154483536|ref|ZP_02025984.1| hypothetical protein EUBVEN_01240 [Eubacterium ventriosum ATCC
           27560]
 gi|149735446|gb|EDM51332.1| hypothetical protein EUBVEN_01240 [Eubacterium ventriosum ATCC
           27560]
          Length = 468

 Score =  439 bits (1129), Expect = e-121,   Method: Composition-based stats.
 Identities = 163/447 (36%), Positives = 247/447 (55%), Gaps = 16/447 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
              V ++GCQMN  DS ++  +    GY+  +  + ADL++ NTC +RE A  K+Y  LG
Sbjct: 33  TACVVTFGCQMNFKDSEKLMGILSQIGYQETDD-EHADLVLYNTCTVRENANLKIYGRLG 91

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELL-ER 142
            +  +K        ++++ + GC+ Q     E++ +    V+++ G    ++L ELL +R
Sbjct: 92  YLSKIKEK----NPEMIIGLCGCMMQEPQVVEKLNKSYRFVDIIFGTHNVFQLAELLYDR 147

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
              G R+ D      +  E L  +     RK    + + I  GC+ FC++C+VPY RG E
Sbjct: 148 LIGGHRIEDIWDGTTEIVEDLPTI-----RKYDFKSGVNIMYGCNNFCSYCIVPYVRGRE 202

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR+   +V E  +L+ NGV E+ LLGQNVN+  GK LD    +F+ LL  + +++GL R
Sbjct: 203 RSRNPEDIVKEVEELVSNGVVEVMLLGQNVNS-YGKTLD-NPISFAKLLEMVEQVEGLER 260

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+ TSHP+D+SD LI+       +   +HLP+QSGS R+LK MNR +   +Y  ++D++
Sbjct: 261 IRFMTSHPKDLSDELIEVMAKSKKICKQMHLPLQSGSSRLLKIMNRHYDKEQYLTLVDKL 320

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+  PDI IS+D IVGFPGETD+DF  T+D+V K  Y  AF+F YS R GTP + M +QV
Sbjct: 321 RAAIPDIGISTDIIVGFPGETDEDFEETLDVVRKARYDSAFTFIYSKRSGTPAATMPDQV 380

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRSPWLQSVVLN 441
            E+V  ER   L   + E          G +  VL+E+  K+  G + GR      V   
Sbjct: 381 PEDVVKERFDRLLNLVNEISREKTKHLEGTVQSVLVEELNKKIPGYVTGRLSNNSVVHFE 440

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                IG I+ V + + K     GE+V
Sbjct: 441 GCKELIGKIVDVNLKEAKGFYYMGEMV 467


>gi|78223499|ref|YP_385246.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Geobacter
           metallireducens GS-15]
 gi|123756395|sp|Q39TA3|MIAB_GEOMG RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|78194754|gb|ABB32521.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Geobacter metallireducens
           GS-15]
          Length = 441

 Score =  439 bits (1129), Expect = e-121,   Method: Composition-based stats.
 Identities = 177/445 (39%), Positives = 259/445 (58%), Gaps = 10/445 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +  +++++GCQMNV DS ++  +   +GY +     +ADLI++NTC +R KA  KVYS+L
Sbjct: 5   KLLYIETFGCQMNVSDSEKVASLLRGEGYSQTPDSSEADLIIVNTCSVRAKAEHKVYSYL 64

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR R LK         LL+ V GCVAQ EGE +L+R P +++V G    + LPE++  A 
Sbjct: 65  GRFRKLKR-----DRRLLLGVGGCVAQQEGERLLKRVPWLDLVFGTHNLHLLPEMVRAAE 119

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G+R    D+   +    L       +   GVT F+T+ +GCD FC++C+VPY RG EIS
Sbjct: 120 QGERRAAVDFIDNEARLDLFP---QADEGGGVTRFVTVMQGCDNFCSYCIVPYVRGREIS 176

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R   +++ E R  +  GV E+TLLGQNVN+  G    GE  +F+ LL  +S I GL R+R
Sbjct: 177 RRSVEIIGEIRSAVAGGVREVTLLGQNVNS-YGLKTPGE-LSFAGLLREISAIDGLERIR 234

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +TTSHP+D+S  LI    +L  L  ++HLP Q+GSD IL  MNR +T  EY + +  +R+
Sbjct: 235 FTTSHPKDISPELIACFAELPKLCGHIHLPAQAGSDSILARMNRGYTRQEYLEKVAALRA 294

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
            RP+I I+ D IVGFPGET+ DF  T+ L++++ Y   FSF YSPR  T  +++ +++  
Sbjct: 295 ARPEILITGDIIVGFPGETEADFLQTLSLMEEVRYTDIFSFAYSPRPETAAASLGDRIMR 354

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
               ERL  +Q   R+  +  +   VG    VL+E   K   +L GR+     V      
Sbjct: 355 KETTERLERVQGLQRDMTIERHAGFVGTCQAVLVEGMSKRGDQLYGRTDGNLIVNFAGNP 414

Query: 445 HNIGDIIKVRITDVKISTLYGELVV 469
              G ++ VRIT    ++L GEL V
Sbjct: 415 SLAGSLVDVRITRGYPNSLLGELAV 439


>gi|311898737|dbj|BAJ31145.1| putative isopentenyl-adenosine A37 tRNA methylthiolase
           [Kitasatospora setae KM-6054]
          Length = 496

 Score =  438 bits (1128), Expect = e-121,   Method: Composition-based stats.
 Identities = 170/448 (37%), Positives = 245/448 (54%), Gaps = 16/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + + V +YGCQMNV+DS R+  +    GY +     D DL+V NTC +RE A  K+Y  L
Sbjct: 6   RTYKVVTYGCQMNVHDSERLSGLLEQAGYAKAVGDGDPDLVVFNTCAVRENADNKLYGNL 65

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR+   K +       + + V GC+AQ + E I+R++P V+VV G      LP LLERA 
Sbjct: 66  GRLAPAKQA----NRGMQIAVGGCLAQKDRETIVRKAPWVDVVFGTHNIGHLPALLERAA 121

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
             +          + F           R+    A++ I  GC+  CTFC+VP  RG E  
Sbjct: 122 VEREAQVEILESLETFPSTLPAR----RESAYAAWVAISVGCNNTCTFCIVPALRGKEED 177

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R    ++ E   L+  GV E+TLLGQNVNA  G  L G++  F  LL +  +++GL R+R
Sbjct: 178 RRPGDILAEVEALVAEGVVEVTLLGQNVNA-YGSDL-GDREAFGKLLRACGQVEGLERVR 235

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +T+ HPRD +D +I A  +    M  LH+P+QSGSDRILK+M R +    +  II+++R+
Sbjct: 236 FTSPHPRDFTDDVIAAMAETPNAMHQLHMPLQSGSDRILKAMRRSYRQERFLGIIEKVRA 295

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             PD AIS+D IVGFPGE+D+DF  T+ +V +  +A AF+F+YS R GTP + M +Q+ +
Sbjct: 296 AMPDAAISTDIIVGFPGESDEDFEQTLHVVREARFANAFTFQYSKRPGTPAAEMDDQIPK 355

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEK---GKLVGRSPWLQSVVL 440
            V  ER   L     E     N   VG+ +EVL+ E  GK+     +L GR+P  + V  
Sbjct: 356 AVVQERYERLVALQEEISWEENKKQVGRRLEVLVAEGEGKKDDRTDRLSGRAPDNRLVHF 415

Query: 441 --NSKNHNIGDIIKVRITDVKISTLYGE 466
                    GD++ V I+      L  E
Sbjct: 416 TRPEGGVRPGDMVTVEISYAAPHHLLAE 443


>gi|307329234|ref|ZP_07608399.1| RNA modification enzyme, MiaB family [Streptomyces violaceusniger
           Tu 4113]
 gi|306885133|gb|EFN16154.1| RNA modification enzyme, MiaB family [Streptomyces violaceusniger
           Tu 4113]
          Length = 500

 Score =  438 bits (1128), Expect = e-121,   Method: Composition-based stats.
 Identities = 171/454 (37%), Positives = 257/454 (56%), Gaps = 21/454 (4%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNS---MDDADLIVLNTCHIREKAAEK 79
             + + +++YGCQMNV+DS R+  +    G+ R        +AD++V NTC +RE A  +
Sbjct: 5   ATKSYEIRTYGCQMNVHDSERLSGLLEEAGFVRATEGTGEGEADIVVFNTCAVRENADNR 64

Query: 80  VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL 139
           +Y  LGR+  +K  R      + + V GC+AQ + + I++++P V+VV G      LP L
Sbjct: 65  LYGNLGRLAPIKARR----PGMQIAVGGCLAQKDRDTIVKKAPWVDVVFGTHNIGSLPVL 120

Query: 140 LERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
           LERAR  +   V+   S+E     L        R+    A+++I  GC+  CTFC+VP  
Sbjct: 121 LERARVQEEAQVEIAESLEAFPSTLPT-----RRESAYAAWVSISVGCNNTCTFCIVPAL 175

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258
           RG E  R    ++ E   L+  GV EITLLGQNVNA  G  + G++  FS LL +  +++
Sbjct: 176 RGKEKDRRPGDILAEVETLVAEGVTEITLLGQNVNA-YGSDI-GDREAFSKLLRACGKVE 233

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           GL R+R+T+ HPRD +D +I A  + + +MP LH+P+QSGSD +LK+M R +    Y  I
Sbjct: 234 GLERVRFTSPHPRDFTDDVISAMAETENVMPQLHMPLQSGSDTVLKAMRRSYRQERYLGI 293

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           I+++R+  PD AIS+D IVGFPGET++DF  T+ +V +  +AQAF+F+YS R GTP + M
Sbjct: 294 IEKVRAAMPDAAISTDIIVGFPGETEEDFEQTLHVVREARFAQAFTFQYSKRPGTPAAEM 353

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKG---KLVGRSPW 434
             QV + V  ER   L     E     N   +G+ +EVL+ E  G++     +L GR+  
Sbjct: 354 DGQVPKAVVQERYERLVALQEEISWEENKKQIGRTLEVLVAEGEGRKDDATRRLSGRAAD 413

Query: 435 LQSVVL--NSKNHNIGDIIKVRITDVKISTLYGE 466
            + V      +    GD++ V IT      L  E
Sbjct: 414 NRLVHFARPEEPVRPGDVVTVDITYAAPHHLLAE 447


>gi|325962847|ref|YP_004240753.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Arthrobacter
           phenanthrenivorans Sphe3]
 gi|323468934|gb|ADX72619.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Arthrobacter
           phenanthrenivorans Sphe3]
          Length = 519

 Score =  438 bits (1128), Expect = e-121,   Method: Composition-based stats.
 Identities = 162/452 (35%), Positives = 252/452 (55%), Gaps = 19/452 (4%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+ + V+++GCQMNV+DS RM  M    GY +    + AD++V NTC +RE A  K+Y  
Sbjct: 29  PRTYQVRTFGCQMNVHDSERMAGMLEDAGYVQAE-GEQADVVVFNTCAVRENADNKLYGN 87

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LG +  +K +       + + V GC+AQ + E IL+++P V+ V G      LP LLERA
Sbjct: 88  LGILAPVKAA----NPGMQIAVGGCLAQKDRETILKKAPWVDAVFGTHNVGALPALLERA 143

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           R             D F           R    + +++I  GC+  CTFC+VP  RG E 
Sbjct: 144 RHNSEAQLEILESLDVFPSTLPT----KRDSVYSGWVSISVGCNNTCTFCIVPALRGKEK 199

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
            R    ++ E + L+D+G  E+TLLGQNVN++  +   G++  FS LL +   I GL R+
Sbjct: 200 DRRPGDILAEIQALVDDGAIEVTLLGQNVNSYGVEF--GDRLAFSKLLRACGGIDGLERV 257

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+T+ HP   +D +I+A  +   +MP LH+P+QSGSDRIL++M R + + ++  I+D++R
Sbjct: 258 RFTSPHPAAFTDDVIEAMAETPNVMPQLHMPLQSGSDRILRAMKRSYRSTKFLGILDKVR 317

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              P  AIS+D IVGFPGET++DF+AT+D+V++  +A AF+F+YS R GTP +++ +Q+ 
Sbjct: 318 ERIPHAAISTDIIVGFPGETEEDFQATLDVVEQSRFATAFTFQYSKRPGTPAADLPDQLP 377

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG----KLVGRSPWLQSVV 439
           + V  ER   L           N   +G+ +EV++      K     +L GRS   + V 
Sbjct: 378 KAVVQERFERLTALQDRIAAEENQRQLGRRVEVMVTAQSGRKAGETHRLSGRSRDQRLVH 437

Query: 440 LN----SKNHNIGDIIKVRITDVKISTLYGEL 467
            +    +     GD++ V IT+     L  + 
Sbjct: 438 FSVPEGAPAPRPGDLVTVTITEAASFHLVADP 469


>gi|206602446|gb|EDZ38927.1| tRNA-i(6)A37 modification enzyme (MiaB) [Leptospirillum sp. Group
           II '5-way CG']
          Length = 468

 Score =  438 bits (1128), Expect = e-121,   Method: Composition-based stats.
 Identities = 190/448 (42%), Positives = 268/448 (59%), Gaps = 14/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + F++K++GCQMNV+DS RM  +  S+G + V+    AD+I++NTC IR+KA +K  S L
Sbjct: 28  KTFYIKTFGCQMNVHDSERMAGLLASEGGKPVSEPAAADIILVNTCTIRDKADQKALSDL 87

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GRIR ++    KEG   ++ V GC+AQ EGEEI R  P V++++GP     L  LL+ A 
Sbjct: 88  GRIRQVR----KEGPGTILAVTGCMAQREGEEIFRLVPDVDLILGPSQIRNLIPLLDAAS 143

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
             +  VD        +    +      R  GV+AF+T+QEGCDK C +CVVP TRG E S
Sbjct: 144 TPRARVDGTL-----WPVPEMTTPPALRPPGVSAFVTVQEGCDKACAYCVVPATRGPERS 198

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R ++ ++ EA  L+  G  EITLLGQNVN   G+  D    +F +LL  LS+I GL+R+R
Sbjct: 199 RPVADILREAEDLVSMGFREITLLGQNVNG-YGQKGDTAGASFPELLQRLSDIPGLLRIR 257

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +TTSHP DMSD LI        +MP+LHLPVQSGSDR+L+ M R +T  +YR+ I+++R 
Sbjct: 258 FTTSHPMDMSDALINVMATSSRVMPHLHLPVQSGSDRMLERMQRGYTLDDYRRWIEKLRK 317

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             P+ A+++D IVGF GET++DF  T+  V++  +  AF+F YSPR  TP  +  +    
Sbjct: 318 KVPEAALTTDLIVGFCGETEEDFEKTLAAVEEFRFDGAFAFIYSPRPSTPAHSWEDIPPR 377

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQ----SVVL 440
            V  ERL  LQKK+ +Q +  N   VG  +E+L EK   E    VGR+P        V  
Sbjct: 378 EVSVERLERLQKKVEQQAMERNQGLVGSRVEILTEKWDPETRTAVGRTPQFLTVRALVAP 437

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
              + + GD++ V IT    + L G  V
Sbjct: 438 ERPDPSPGDLLFVTITQGARAGLKGNAV 465


>gi|296327837|ref|ZP_06870374.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Fusobacterium nucleatum
           subsp. nucleatum ATCC 23726]
 gi|296155051|gb|EFG95831.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Fusobacterium nucleatum
           subsp. nucleatum ATCC 23726]
          Length = 435

 Score =  438 bits (1128), Expect = e-121,   Method: Composition-based stats.
 Identities = 155/445 (34%), Positives = 259/445 (58%), Gaps = 12/445 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++  + +YGCQMNV +S +++ +F + GY+    +D+AD + LNTC +RE AA +++  L
Sbjct: 2   KKASIITYGCQMNVNESAKIKKIFQNLGYDVTEEIDNADAVFLNTCTVREGAATQIFGKL 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           G ++ LK          ++ V GC AQ +GEE++++ PI+++V+G Q   R+P+ +E+  
Sbjct: 62  GELKALKEK-----RGTIIGVTGCFAQEQGEELVKKFPIIDIVMGNQNIGRIPQAIEKIE 116

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
             +   +     ED+                 TA ++I  GC+ FCTFC+VPY RG E S
Sbjct: 117 NNESTHEVYTDNEDEL----PPRLDAEFGSDQTASISITYGCNNFCTFCIVPYVRGRERS 172

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
             L ++V +  + +  G  EI LLGQNVN++     +G+   F+ LL  + +++G   +R
Sbjct: 173 VPLEEIVKDVEQYVKKGAKEIVLLGQNVNSYGKDFKNGD--NFAKLLDEICKVEGDYIVR 230

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           + + HPRD +D +I+     + +   LHLP+QSGS +ILK M R +T  +Y  ++D+I+S
Sbjct: 231 FVSPHPRDFTDDVIEVIAKNEKISKCLHLPLQSGSSQILKKMRRGYTKEKYLALVDKIKS 290

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             P +A+++D IVGFPGET++DF  T+D+V K+ +  ++ F YS R GT  + M  Q++E
Sbjct: 291 KIPGVALTADIIVGFPGETEEDFLDTIDVVQKVSFDNSYMFMYSIRKGTKAATMDNQIEE 350

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVLNSK 443
           +VK ERL  L +   +     +    G+I++VL+E   K+  + L GR+   + V+    
Sbjct: 351 SVKKERLQRLMEVQNKCSFYESSKYKGRIVKVLVEGPSKKNKEVLSGRTSTNKIVLFRGN 410

Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468
               G  + V+I + K  TLYGE+V
Sbjct: 411 LALKGQFVNVKINECKTWTLYGEIV 435


>gi|237741509|ref|ZP_04571990.1| tRNA 2-methylthioadenosine synthase [Fusobacterium sp. 4_1_13]
 gi|229429157|gb|EEO39369.1| tRNA 2-methylthioadenosine synthase [Fusobacterium sp. 4_1_13]
          Length = 435

 Score =  438 bits (1128), Expect = e-121,   Method: Composition-based stats.
 Identities = 154/445 (34%), Positives = 256/445 (57%), Gaps = 12/445 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++  + +YGCQMNV +S +++ +F + GY+    +D+AD + LNTC +RE AA +++  L
Sbjct: 2   KKASIITYGCQMNVNESAKIKKIFQNLGYDVTEEIDNADAVFLNTCTVREGAATQIFGKL 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           G ++ LK          ++ V GC AQ +GEE++++ PI+++V+G Q   R+P+ +E+  
Sbjct: 62  GELKALKEK-----RGTIIGVTGCFAQEQGEELVKKFPIIDIVMGNQNIGRIPQAIEKIE 116

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
             +   +     ED+                 TA ++I  GC+ FCTFC+VPY RG E S
Sbjct: 117 NNESTHEVYTDNEDEL----PPRLDAEFGSDQTASISITYGCNNFCTFCIVPYVRGRERS 172

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
             L ++V +  + +  G  EI LLGQNVN++     +G+   F+ LL  + +++G   +R
Sbjct: 173 VPLEEIVKDVEQYVKKGAKEIVLLGQNVNSYGKDFKNGD--NFAKLLDEICKVEGDYIVR 230

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           + + HPRD +D +I      D +   LHLP+QSGS +IL+ M R +T  +Y  ++D+I+S
Sbjct: 231 FVSPHPRDFTDDVIDVIAKNDKISKCLHLPLQSGSSQILRKMGRGYTKEKYLALVDKIKS 290

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             P +A+++D IVGFPGET++DF  T+D+V K+ +  ++ F YS R GT  + M  Q++E
Sbjct: 291 KIPGVALTADIIVGFPGETEEDFLDTIDVVQKVSFDNSYMFMYSIRKGTKAATMDNQIEE 350

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVLNSK 443
            VK ERL  L +   +     +     +I++VL+E   K+  + L GR+   + V+    
Sbjct: 351 AVKKERLQRLMEVQNKCSFEESSKYKDRIVKVLVEGPSKKNKEVLSGRTSTNKVVLFKGN 410

Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468
               G  + V+I + K  TLYGE+V
Sbjct: 411 LGLKGQFVNVKINECKTWTLYGEIV 435


>gi|297588418|ref|ZP_06947061.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Finegoldia magna ATCC
           53516]
 gi|297573791|gb|EFH92512.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Finegoldia magna ATCC
           53516]
          Length = 461

 Score =  438 bits (1128), Expect = e-121,   Method: Composition-based stats.
 Identities = 170/446 (38%), Positives = 266/446 (59%), Gaps = 14/446 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
            + + ++GCQMN +DS +++ +  + G+E+ +   DAD I+ NTC +RE A  KVY  LG
Sbjct: 26  TYSIITHGCQMNEHDSEKIKTLLENMGFEQSDEKLDADFIIFNTCLVRENAEMKVYGQLG 85

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERA 143
            ++NLK    +E  D+L+ V GC+ Q     + I  + P V++V G      LP L++R 
Sbjct: 86  ALKNLK----RENPDMLIAVCGCMMQTGPARDIIREKYPQVDIVFGVNNINSLPYLIDRH 141

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
               ++V      +D  E ++I      R      ++ I  GC+ FCT+C+VPY RG E 
Sbjct: 142 LSSGKLVVDIERKDDIDEDIAI-----KRDNEYVGYVNIMTGCNNFCTYCIVPYARGREQ 196

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SRS+  ++ E ++++D G  +ITLLGQNVN+  GK L+ +  TF++LL  +++++GL RL
Sbjct: 197 SRSVESILSEVKRMVDQGYKDITLLGQNVNS-YGKTLE-KPVTFTELLTKVNDVEGLERL 254

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+ TSHP+D+SD LI+A G LD +   +HLP Q+GS+ +L+ M+RR+T   Y + +++++
Sbjct: 255 RFLTSHPKDISDELIEAMGKLDKVCENIHLPFQAGSNSVLERMHRRYTKESYLEKVEKLK 314

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
                I  S+D IVGFPGET++DF+ T+D+V K+GY QAF+FKY+ R GT      +QVD
Sbjct: 315 KSVKGITFSTDIIVGFPGETEEDFQDTLDVVRKVGYEQAFTFKYNRRPGTKADLFEDQVD 374

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVLNS 442
           E+VK +RL  L           N + +G I EVLIE   K   + + GR+   + V +  
Sbjct: 375 EDVKQDRLERLLDVAYPIFYEKNKSYLGTIQEVLIEGESKNNPEVMTGRTRTFKLVNVKC 434

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
               IG ++  +I D     L GE+V
Sbjct: 435 DKSYIGKLVNTKIVDFNSFALTGEMV 460


>gi|254776064|ref|ZP_05217580.1| hypothetical protein MaviaA2_15530 [Mycobacterium avium subsp.
           avium ATCC 25291]
          Length = 490

 Score =  438 bits (1128), Expect = e-121,   Method: Composition-based stats.
 Identities = 167/453 (36%), Positives = 257/453 (56%), Gaps = 20/453 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNS-MDDADLIVLNTCHIREKAAEKVYSF 83
           + + V++YGCQMNV+DS R+  +  + GY R     + AD++V NTC +RE A  K+Y  
Sbjct: 2   RTYQVRTYGCQMNVHDSERLAGLLEAAGYRRAAEGAEVADVVVFNTCAVRENADNKLYGN 61

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           L  +   K        ++ + V GC+AQ + E +LRR+P V+VV G      LP LLERA
Sbjct: 62  LSHLAPRKRG----NPEMQIAVGGCLAQKDREAVLRRAPWVDVVFGTHNIGSLPTLLERA 117

Query: 144 RFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           R  K   V+   +++     L        R+    A+++I  GC+  CTFC+VP  RG E
Sbjct: 118 RHNKAAQVEIAEALQQFPSSLPSA-----RESAYAAWVSISVGCNNSCTFCIVPSLRGKE 172

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG----EKCTFSDLLYSLSEIK 258
           + RS   ++ E R L+ +GV E+TLLGQNVNA+     D     ++  F+ LL +  EI 
Sbjct: 173 VDRSPDDILAEVRSLVADGVLEVTLLGQNVNAYGVSFADPALPRDRGAFARLLRACGEID 232

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           GL R+R+T+ HP + +D +I+A      + P LH+P+QSGSDR+L++M R + A  +  I
Sbjct: 233 GLERVRFTSPHPAEFTDDVIEAMAQTPNVCPALHMPLQSGSDRVLRAMRRSYRAERFLGI 292

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           IDR+R+  P  AI++D IVGFPGET++DF AT+D+V +  +A AF+F+YS R GTP + +
Sbjct: 293 IDRVRAAMPHAAITTDLIVGFPGETEEDFAATLDVVRRARFAAAFTFQYSKRPGTPAAEL 352

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKG---KLVGRSPW 434
             Q+ + V  ER   L +      +  N A VGQ +E+L+    G++     ++ GR+  
Sbjct: 353 DGQIPKAVVQERYERLVELQESISLQGNQALVGQTVELLVATGEGRKDSATARMSGRARD 412

Query: 435 LQSVVLNSKN-HNIGDIIKVRITDVKISTLYGE 466
            + V   + +    GD++   IT      L  +
Sbjct: 413 GRLVHFTADDRVRPGDLVTTVITGAAPHHLIAD 445


>gi|296393361|ref|YP_003658245.1| RNA modification enzyme, MiaB family [Segniliparus rotundus DSM
           44985]
 gi|296180508|gb|ADG97414.1| RNA modification enzyme, MiaB family [Segniliparus rotundus DSM
           44985]
          Length = 514

 Score =  438 bits (1127), Expect = e-121,   Method: Composition-based stats.
 Identities = 163/466 (34%), Positives = 267/466 (57%), Gaps = 22/466 (4%)

Query: 17  IVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA 76
           + +     + + ++++GCQMNV+DS R+  +  + G+ +      AD++V NTC +RE A
Sbjct: 19  VPEDHPANRTYELRTFGCQMNVHDSERLAGLLEADGHVKAEDGASADVVVFNTCAVRENA 78

Query: 77  AEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL 136
            +++Y  LG +R +K +       + + V GC+AQ +G+ +LRR+P V+VV G      L
Sbjct: 79  DDRLYGTLGHLRPIKEA----NPGMQIAVGGCLAQKDGDTVLRRAPWVDVVFGTHNMGSL 134

Query: 137 PELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
           P LL RAR  +   ++   S++     L        R      +++I  GC+  CTFC+V
Sbjct: 135 PALLRRARHNQAAQIEIVDSLQAFPSTLP-----SKRDSLHAGWVSIAVGCNNTCTFCIV 189

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG----EKCTFSDLL 251
           P  RG ++ R+  ++V E R L+  GV E+TLLGQNVNA+     D     ++  F+ LL
Sbjct: 190 PSLRGKQLDRAPQEIVAEVRALVAEGVLEVTLLGQNVNAYGSSFADPALPRDRGAFAKLL 249

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
            S+ EI+GL R+R+T+ HP + ++ ++ A  +   + P+LH+P+QSGSDR+LK+M R + 
Sbjct: 250 RSMGEIEGLERVRFTSPHPAEFTEDVVLAMAETPNVCPHLHMPLQSGSDRVLKAMRRSYR 309

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
           + +Y  I+ R+R + PD AI++D IVGFPGET++DF+AT+D+V +  +A A++F+YS R 
Sbjct: 310 SAKYLGIVRRVRELLPDAAITTDIIVGFPGETEEDFQATLDVVAQARFASAYTFQYSKRP 369

Query: 372 GTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI----EK-HGKEKG 426
           GTP + + +Q+D+ V AER   L +      +  N+  +G+  E+L+    E     +  
Sbjct: 370 GTPAAELPDQIDKEVVAERYQRLVELQERICLEENEQQLGREAELLVSAPHEGKKNAQTS 429

Query: 427 KLVGRSPWLQSVVL---NSKNHNIGDIIKVRITDVKISTLYGELVV 469
           +L GRS   + V            GD ++VRI       L GE V 
Sbjct: 430 RLSGRSRDGRLVHFLPPEGAQLRPGDFVRVRIAHAAPHHLIGEAVA 475


>gi|282895989|ref|ZP_06304020.1| tRNA-i(6)A37 modification enzyme MiaB [Raphidiopsis brookii D9]
 gi|281199099|gb|EFA73969.1| tRNA-i(6)A37 modification enzyme MiaB [Raphidiopsis brookii D9]
          Length = 447

 Score =  438 bits (1127), Expect = e-121,   Method: Composition-based stats.
 Identities = 181/456 (39%), Positives = 277/456 (60%), Gaps = 23/456 (5%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           +P+R+ + ++GCQMN  DS RM  +    G+E   +  +A+LIV NTC IR+ A +KVYS
Sbjct: 4   LPRRYHITTFGCQMNKADSERMAGILEDMGFEWSENPQNANLIVYNTCTIRDNAEQKVYS 63

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
           +LGR    K+       DL +VVAGCVAQ EG+ +LRR P +++V+GPQ   RL +LL+ 
Sbjct: 64  YLGRQAKRKHQE----PDLTLVVAGCVAQQEGQALLRRVPELDLVMGPQYANRLQDLLDS 119

Query: 143 ARFGKRVVDTD--YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
              G +VV T+  + +ED  +          R   VTA++ +  GC++ CT+CVVP  RG
Sbjct: 120 VFAGNQVVATEEVHILEDITQP--------RRDSRVTAWVNVIYGCNERCTYCVVPNVRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG------EKCTFSDLLYSL 254
           +E SR+   +  E   L   G  EITLLGQN++A  G+ L G         TF+DLLY +
Sbjct: 172 VEQSRTPEAIRGEMEILGQQGYREITLLGQNIDA-YGRDLPGSTTEGRNLHTFTDLLYYV 230

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
            ++ G+ R+R+ TSHPR  ++ LIKA  +L  +  + H+P QSG + ILK+M+R +T  +
Sbjct: 231 HDVPGIERIRFATSHPRYFTERLIKACAELPKICEHFHIPFQSGDNEILKAMSRGYTQEK 290

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
           YR+II+ IRS  PD +IS+D IVGFPGET+  F+ T+ LVD IG+    +  YSPR GTP
Sbjct: 291 YRRIINTIRSYMPDASISADAIVGFPGETEIQFQNTLQLVDDIGFDHLNTAAYSPRPGTP 350

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSP 433
            +    Q+ E +K++RL  L   +  +    +   +G++ EVL+E ++ K++ +++GR+ 
Sbjct: 351 AALWDNQLSEEIKSDRLQRLNHLVNVKAAQRSQRYLGRMEEVLVEDQNPKDQSQVMGRTR 410

Query: 434 WLQSVVLNSK-NHNIGDIIKVRITDVKISTLYGELV 468
             +        N   G +++V+I +V+  +L GELV
Sbjct: 411 GNRLAFFQGDINQLRGRMVRVKIQEVRAFSLSGELV 446


>gi|307085426|ref|ZP_07494539.1| conserved alanine and arginine rich protein [Mycobacterium
           tuberculosis SUMu012]
 gi|308365073|gb|EFP53924.1| conserved alanine and arginine rich protein [Mycobacterium
           tuberculosis SUMu012]
          Length = 563

 Score =  438 bits (1127), Expect = e-121,   Method: Composition-based stats.
 Identities = 168/468 (35%), Positives = 262/468 (55%), Gaps = 18/468 (3%)

Query: 9   GVAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLN 68
           GV    +    +    + + V++YGCQMNV+DS R+  +  + GY R     +AD++V N
Sbjct: 60  GVTGEGAGPPVRRAPARTYQVRTYGCQMNVHDSERLAGLLEAAGYRRATDGSEADVVVFN 119

Query: 69  TCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVV 128
           TC +RE A  ++Y  L  +   K +      D+ + V GC+AQ + + +LRR+P V+VV 
Sbjct: 120 TCAVRENADNRLYGNLSHLAPRKRA----NPDMQIAVGGCLAQKDRDAVLRRAPWVDVVF 175

Query: 129 GPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
           G      LP LLERAR  K           +F          +R+    A+++I  GC+ 
Sbjct: 176 GTHNIGSLPTLLERARHNKVAQVEIAEALQQF----PSSLPSSRESAYAAWVSISVGCNN 231

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG----EK 244
            CTFC+VP  RG E+ RS + ++ E R L+++GV E+TLLGQNVNA+     D      +
Sbjct: 232 SCTFCIVPSLRGREVDRSPADILAEVRSLVNDGVLEVTLLGQNVNAYGVSFADPALPRNR 291

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304
             F++LL +  +I GL R+R+T+ HP + +D +I+A      + P LH+P+QSGSDRIL+
Sbjct: 292 GAFAELLRACGDIDGLERVRFTSPHPAEFTDDVIEAMAQTRNVCPALHMPLQSGSDRILR 351

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
           +M R + A  Y  II+R+R+  P  AI++D IVGFPGET++DF AT+D+V +  +A AF+
Sbjct: 352 AMRRSYRAERYLGIIERVRAAIPHAAITTDLIVGFPGETEEDFAATLDVVRRARFAAAFT 411

Query: 365 FKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGK 423
           F+YS R GTP + +  Q+ + V  ER   L     +  +  N A VGQ +EVL+    G+
Sbjct: 412 FQYSKRPGTPAAQLDGQLPKAVVQERYERLIALQEQISLEANRALVGQAVEVLVATGEGR 471

Query: 424 EK---GKLVGRSPWLQSVVLNS--KNHNIGDIIKVRITDVKISTLYGE 466
           +     ++ GR+   + V   +       GD+I  ++T+     L  +
Sbjct: 472 KDTVTARMSGRARDGRLVHFTAGQPRVRPGDVITTKVTEAAPHHLIAD 519


>gi|120403419|ref|YP_953248.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Mycobacterium
           vanbaalenii PYR-1]
 gi|229890571|sp|A1T7U2|MIAB_MYCVP RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|119956237|gb|ABM13242.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Mycobacterium vanbaalenii
           PYR-1]
          Length = 510

 Score =  438 bits (1127), Expect = e-121,   Method: Composition-based stats.
 Identities = 170/473 (35%), Positives = 263/473 (55%), Gaps = 28/473 (5%)

Query: 13  MVSQIVDQCIVP------QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIV 66
           M S +  Q   P      + F V++YGCQMNV+DS R+  +    GY R     DAD++V
Sbjct: 1   MTSTVTQQASGPSPDRSARTFEVRTYGCQMNVHDSERLAGLLEGAGYRRAGEGADADIVV 60

Query: 67  LNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNV 126
            NTC +RE A  K+Y  L  +   K S      D+ + V GC+AQ + + +LR++P V+V
Sbjct: 61  FNTCAVRENADNKLYGNLSHLAPRKQSD----PDMQIAVGGCLAQKDRDSVLRKAPWVDV 116

Query: 127 VVGPQTYYRLPELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEG 185
           V G      LP LL+RAR  +   V+   ++++    L       +R+    A+++I  G
Sbjct: 117 VFGTHNIGSLPALLDRARHNRVAQVEIAEALQEFPSALP-----ASRESSYAAWVSISVG 171

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG--- 242
           C+  CTFC+VP  RG E+ R    V+ E + L+D GV EITLLGQNVNA+     D    
Sbjct: 172 CNNTCTFCIVPALRGREVDRRPGDVLAEVQSLVDQGVLEITLLGQNVNAYGVSFADPTEP 231

Query: 243 -EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
            ++  F+ LL +   I GL R+R+T+ HP + +D +I+A  +   + P LH+P+QSGSDR
Sbjct: 232 RDRGAFAKLLRACGRIDGLERVRFTSPHPAEFTDDVIEAMAETPNVCPTLHMPLQSGSDR 291

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
           IL++M R + A  Y  IIDR+R+  P  AI++D IVGFPGET++DF+AT+D+V    ++ 
Sbjct: 292 ILRAMRRSYRAERYLGIIDRVRAAIPHAAITTDLIVGFPGETEEDFQATLDVVAASRFSS 351

Query: 362 AFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EK 420
           AF+F+YS R GTP + + +QV + V +ER   L +      +  N A +G+ +E+L+   
Sbjct: 352 AFTFQYSKRPGTPAAELADQVPKAVVSERYQRLIELQERISLEENTAQIGRRVELLVATG 411

Query: 421 HGKEK---GKLVGRSPWLQSVVL----NSKNHNIGDIIKVRITDVKISTLYGE 466
            G++     ++ GR+   + V             GD++   +T      L  +
Sbjct: 412 EGRKDAATARMSGRARDGRLVHFAPGAVGSEVRPGDVVVTTVTGAAPHHLIAD 464


>gi|256844844|ref|ZP_05550302.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Fusobacterium sp.
           3_1_36A2]
 gi|294785875|ref|ZP_06751163.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Fusobacterium sp. 3_1_27]
 gi|256718403|gb|EEU31958.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Fusobacterium sp.
           3_1_36A2]
 gi|294487589|gb|EFG34951.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Fusobacterium sp. 3_1_27]
          Length = 435

 Score =  438 bits (1126), Expect = e-120,   Method: Composition-based stats.
 Identities = 154/445 (34%), Positives = 256/445 (57%), Gaps = 12/445 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++  + +YGCQMNV +S +++ +F + GY+    +D+AD + LNTC +RE AA +++  L
Sbjct: 2   KKASIITYGCQMNVNESAKIKKIFQNLGYDVTEEIDNADAVFLNTCTVREGAATQIFGKL 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           G ++ LK          ++ V GC AQ +GEE++++ PI+++V+G Q   R+P+ +E+  
Sbjct: 62  GELKALKEK-----RGTIIGVTGCFAQEQGEELVKKFPIIDIVMGNQNIGRIPQAIEKIE 116

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
             +   +     ED+                 TA ++I  GC+ FCTFC+VPY RG E S
Sbjct: 117 NNESTHEVYTDNEDEL----PPRLDAEFGSDQTASISITYGCNNFCTFCIVPYVRGRERS 172

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
             L ++V +  + +  G  EI LLGQNVN++     +G+   F+ LL  + +++G   +R
Sbjct: 173 VPLEEIVKDVEQYVKKGAKEIVLLGQNVNSYGKDFKNGD--NFAKLLDEICKVEGDYIVR 230

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           + + HPRD +D +I      D +   LHLP+QSGS +IL+ M R +T  +Y  ++D+I+S
Sbjct: 231 FVSPHPRDFTDDVIDVIAKNDKISKCLHLPLQSGSSQILRKMGRGYTKEKYLALVDKIKS 290

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             P +A+++D IVGFPGET++DF  T+D+V K+ +  ++ F YS R GT  + M  Q++E
Sbjct: 291 KIPGVALTADIIVGFPGETEEDFLDTIDVVQKVSFDNSYMFMYSIRKGTKAATMDNQIEE 350

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVLNSK 443
            VK ERL  L +   +     +     +I++VL+E   K+  + L GR+   + V+    
Sbjct: 351 AVKKERLQRLMEVQNKCSFEESSKYKDRIVKVLVEGSSKKNKEVLSGRTSTNKVVLFKGN 410

Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468
               G  + V+I + K  TLYGE+V
Sbjct: 411 LGLKGQFVNVKINECKTWTLYGEIV 435


>gi|331697733|ref|YP_004333972.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Pseudonocardia dioxanivorans CB1190]
 gi|326952422|gb|AEA26119.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Pseudonocardia dioxanivorans CB1190]
          Length = 490

 Score =  438 bits (1126), Expect = e-120,   Method: Composition-based stats.
 Identities = 172/451 (38%), Positives = 262/451 (58%), Gaps = 18/451 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + + + +++YGCQMNV+DS RM  +  S GY R  + DDAD++VLNTC +RE A  K+Y 
Sbjct: 1   MTRSYTIRTYGCQMNVHDSERMAGLLESAGYVRAEATDDADVVVLNTCAVRENADNKLYG 60

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            LG +   K +R      + + V GC+AQ + + I+ ++P V+VV G      LP LLER
Sbjct: 61  NLGHLAPRKAAR----PGMQIAVGGCLAQKDRDTIVAKAPWVDVVFGTHNVGALPTLLER 116

Query: 143 ARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           AR  +R  V+   S+E     L        R+     +++I  GC+  CTFC+VP  RG 
Sbjct: 117 ARHNERAEVEIRESLEVFPSTLP-----ARRESAYAGWVSISVGCNNTCTFCIVPSLRGK 171

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E  R    V+ E   L  +GV E+TLLGQNVNA+  +   G++  FS LL +  +++GL 
Sbjct: 172 ERDRRPGDVLAEVSALAADGVLEVTLLGQNVNAYGVEF--GDREAFSKLLRACGDVEGLE 229

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+T+ HPR+ S  +I A  +   + P LH+P+QSGSDR+L+ M R + +  +  I+D 
Sbjct: 230 RVRFTSPHPREFSSDVIAAMAETPNVCPQLHMPLQSGSDRVLREMRRSYRSSRFLAILDE 289

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R   PD AIS+D IVGFPGET++DFRAT+D+V++  +AQAF+F+YSPR GTP + + +Q
Sbjct: 290 VRGSIPDAAISTDIIVGFPGETEEDFRATLDVVERARFAQAFTFQYSPRPGTPAATLPDQ 349

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKG---KLVGRSPWLQS 437
           + + V  ER   L +         N A  G+++EVL+    G++     +L GR+   + 
Sbjct: 350 LPKAVVQERYERLVELQERISWEQNRALEGRVVEVLVSTGEGRKDSATRRLSGRARDGRL 409

Query: 438 VVLN--SKNHNIGDIIKVRITDVKISTLYGE 466
           V     +     GD++ VR+       L  +
Sbjct: 410 VHFAPGAAPVRPGDVVTVRVGYGAPHHLVAD 440


>gi|313896795|ref|ZP_07830343.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Selenomonas sp. oral
           taxon 137 str. F0430]
 gi|320529997|ref|ZP_08031073.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Selenomonas artemidis
           F0399]
 gi|312974712|gb|EFR40179.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Selenomonas sp. oral
           taxon 137 str. F0430]
 gi|320137794|gb|EFW29700.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Selenomonas artemidis
           F0399]
          Length = 436

 Score =  438 bits (1126), Expect = e-120,   Method: Composition-based stats.
 Identities = 172/443 (38%), Positives = 256/443 (57%), Gaps = 13/443 (2%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R+ +  YGCQMN+ D+ RME    S GY R     DAD+I++NTC +RE A +KVY  +G
Sbjct: 5   RYKILVYGCQMNIADAERMEGQLQSVGYTRTEETADADVILINTCCVRESAEDKVYGKIG 64

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            I+ LK         L+  +AGC+AQ EG+ +++R+P ++ V+G      L  ++   R 
Sbjct: 65  EIKKLKER----NPHLIFGIAGCMAQKEGDNLMQRAPHIDFVLGTGKVQELTRIIAEIRA 120

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
               V          E L I  GG       +A++ I  GC+ FCTFC+VPY RG E SR
Sbjct: 121 EHSPVVDTVIGNTIAENLPIARGGK-----FSAWVPIMYGCNNFCTFCIVPYVRGRERSR 175

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           +   VV E R+ +  G  E+TLLGQNVN++   G D +   F+DLL  + E++G+ R+R+
Sbjct: 176 TPEDVVAEVRRAVAEGYTEVTLLGQNVNSY---GKDHKAADFADLLRMVDEVEGIRRVRF 232

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
            TSHP+D+SD LI    +   L  ++HLPVQ GS+RILK+MNR +T   YR+ + R+R  
Sbjct: 233 MTSHPKDISDKLIDTIRNGRHLCEHIHLPVQYGSNRILKAMNRVYTVESYRERVRRVREA 292

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P+ ++++D IVGFPGET++DF AT+D + +I Y  A++F YS R GTP + M +QV ++
Sbjct: 293 LPEASLTTDLIVGFPGETEEDFAATLDFLREIRYDSAYTFLYSKRSGTPAARMEDQVPDD 352

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVLNSKN 444
           VK  RL  L ++  +     N+   G  +EV++E   K +     GR+   + V+     
Sbjct: 353 VKHARLNLLMEEQNKISRDINEKLAGTELEVMVEGESKNDPAVWSGRTRTNKIVLFPHGT 412

Query: 445 HNIGDIIKVRITDVKISTLYGEL 467
              GD + VRI   +   L GE+
Sbjct: 413 EQAGDFVHVRIDRAQTWVLKGEI 435


>gi|148241703|ref|YP_001226860.1| 2-methylthioadenine synthetase [Synechococcus sp. RCC307]
 gi|229891031|sp|A5GRJ8|MIAB_SYNR3 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|147850013|emb|CAK27507.1| 2-methylthioadenine synthetase [Synechococcus sp. RCC307]
          Length = 453

 Score =  438 bits (1126), Expect = e-120,   Method: Composition-based stats.
 Identities = 179/447 (40%), Positives = 269/447 (60%), Gaps = 18/447 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
            +++ ++GCQMN  DS RM  +  S GY   +  D ADL++ NTC IR+ A +KVYS+LG
Sbjct: 8   TYWITTFGCQMNKADSERMAGILESMGYCAGSGEDQADLVLYNTCTIRDNAEQKVYSYLG 67

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R    K    ++   L +VVAGCVAQ EGE +LRR P +++V+GPQ   RL  LL +   
Sbjct: 68  RQARRK----RDNPALTLVVAGCVAQQEGESLLRRVPELDLVMGPQHANRLDTLLSQVEA 123

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G++VV TD       E ++       R   + A++ +  GC++ CT+CVVP  RG E SR
Sbjct: 124 GQQVVATD--DHHILEDITTAR----RDSSLCAWVNVIYGCNERCTYCVVPSVRGQEQSR 177

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG------EKCTFSDLLYSLSEIKG 259
               +  E   L  +G  EITLLGQN++A  G+ L G       + T +DLL+ + ++KG
Sbjct: 178 LPQAIRLEMEGLAASGYKEITLLGQNIDA-YGRDLPGITPEGRRQNTLTDLLHHVHDVKG 236

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           + R+R+ TSHPR  ++ LI+A  +L  +  + H+P QSG D +LK+M R +T   YR+I+
Sbjct: 237 IERIRFATSHPRYFTERLIEACAELPKVCEHFHVPFQSGDDELLKAMARGYTTARYRRIV 296

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
           ++IR + PD AIS+D IVGFPGETD  FR T++LVD+IG+    +  YSPR  TP ++  
Sbjct: 297 EQIRKLMPDAAISADAIVGFPGETDAQFRRTLELVDEIGFDLLNTAAYSPRPNTPAADWP 356

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSV 438
           +QV+E+VK ERL  L   +  +  + +   +G++ EVL E    K+  +L+GR+   +  
Sbjct: 357 DQVEEHVKVERLKELNALVERKAKACSQRYLGRVEEVLAEGINPKDNTQLMGRTRTNRLT 416

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYG 465
              + +H +GD + VRI  V+  +L G
Sbjct: 417 FFPAGSHRVGDTVPVRIEQVRAFSLSG 443


>gi|118471123|ref|YP_887063.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Mycobacterium
           smegmatis str. MC2 155]
 gi|229890566|sp|A0QVX5|MIAB_MYCS2 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|118172410|gb|ABK73306.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Mycobacterium smegmatis
           str. MC2 155]
          Length = 512

 Score =  438 bits (1126), Expect = e-120,   Method: Composition-based stats.
 Identities = 168/453 (37%), Positives = 263/453 (58%), Gaps = 20/453 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + + V++YGCQMNV+DS R+  +  S GY+R     DAD++V NTC +RE A  K+Y  L
Sbjct: 23  RTYQVRTYGCQMNVHDSERLSGLLESAGYQRAAEGTDADIVVFNTCAVRENADNKLYGNL 82

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             +   K +      ++ + V GC+AQ + + +LRR+P V+VV G      LP LLERAR
Sbjct: 83  SHLAPRKQAD----PNMQIAVGGCLAQKDRDAVLRRAPWVDVVFGTHNIGSLPTLLERAR 138

Query: 145 FGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             +   V+   ++++    L       +R+    A+++I  GC+  CTFC+VP  RG E+
Sbjct: 139 HNREAQVEIVEALQEFPSALP-----ASRESAYAAWVSISVGCNNTCTFCIVPSLRGKEV 193

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT----FSDLLYSLSEIKG 259
            R    ++ E + L+D GV EITLLGQNVNA+     D E       F+ LL +   I G
Sbjct: 194 DRRPGDILAEVQSLVDQGVLEITLLGQNVNAYGVSFADPELPRDRGAFAKLLRACGGIDG 253

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           L R+R+T+ HP + +D +I+A      + P LH+P+QSGSDRILK+M R + A  +  II
Sbjct: 254 LERVRFTSPHPAEFTDDVIEAMAATPNVCPTLHMPLQSGSDRILKAMRRSYRAERFLGII 313

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
           D++R+  P  AI++D IVGFPGET++DF+AT+D+V++  +A AF+F+YS R GTP ++M 
Sbjct: 314 DKVRAAIPHAAITTDLIVGFPGETEEDFQATLDVVEQARFAGAFTFQYSKRPGTPAADMP 373

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEK---GKLVGRSPWL 435
           +Q+ ++V  ER   L +      +  N   VG+ +E+L+    G++     ++ GR+   
Sbjct: 374 DQLPKSVVTERYQRLIELQERISLEQNREQVGRAVELLVATGEGRKDASTARMSGRARDG 433

Query: 436 QSVVLNSKNHNI--GDIIKVRITDVKISTLYGE 466
           + V     ++ I  GDI+   +T      L  +
Sbjct: 434 RLVHFLPGDNEIRPGDIVTTTVTGAAPHHLIAD 466


>gi|19703810|ref|NP_603372.1| MIAB protein [Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
 gi|81484620|sp|Q8RG43|MIAB_FUSNN RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|19713958|gb|AAL94671.1| MIAB protein [Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
          Length = 435

 Score =  437 bits (1125), Expect = e-120,   Method: Composition-based stats.
 Identities = 156/445 (35%), Positives = 258/445 (57%), Gaps = 12/445 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++  + +YGCQMNV +S +++ +F + GY+    +D+AD + LNTC +RE AA +++  L
Sbjct: 2   KKASIITYGCQMNVNESAKIKKIFQNLGYDVTEEIDNADAVFLNTCTVREGAATQIFGKL 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           G ++ LK          ++ V GC AQ +GEE++++ PI+++V+G Q   R+P+ +E+  
Sbjct: 62  GELKALKEK-----RGTIIGVTGCFAQEQGEELVKKFPIIDIVMGNQNIGRIPQAIEKIE 116

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
             +   +     ED+                 TA ++I  GC+ FCTFC+VPY RG E S
Sbjct: 117 NNESTHEVYTDNEDEL----PPRLDAEFGSDQTASISITYGCNNFCTFCIVPYVRGRERS 172

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
             L ++V +  + +  G  EI LLGQNVN++     +G+   F+ LL  + +++G   +R
Sbjct: 173 VPLEEIVKDVEQYVKKGAKEIVLLGQNVNSYGKDFKNGD--NFAKLLDEICKVEGDYIVR 230

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           + + HPRD +D +I+       +   LHLP+QSGS +ILK M R +T  +Y  ++D+I+S
Sbjct: 231 FVSPHPRDFTDDVIEVIAKNKKISKCLHLPLQSGSSQILKKMRRGYTKEKYLALVDKIKS 290

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             P +A+++D IVGFPGET++DF  T+D+V K+ +  ++ F YS R GT  + M  Q++E
Sbjct: 291 KIPGVALTADIIVGFPGETEEDFLDTIDVVQKVSFDNSYMFMYSIRKGTKAATMDNQIEE 350

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVLNSK 443
           +VK ERL  L +   +     +    G+I++VL+E   K+  + L GR+   + V+    
Sbjct: 351 SVKKERLQRLMEVQNKCSFYESSKYKGRIVKVLVEGPSKKNKEVLSGRTSTNKIVLFRGN 410

Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468
               G  I V+I + K  TLYGE+V
Sbjct: 411 LALKGQFINVKINECKTWTLYGEIV 435


>gi|315444879|ref|YP_004077758.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Mycobacterium sp. Spyr1]
 gi|315263182|gb|ADT99923.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Mycobacterium sp. Spyr1]
          Length = 516

 Score =  437 bits (1125), Expect = e-120,   Method: Composition-based stats.
 Identities = 166/460 (36%), Positives = 258/460 (56%), Gaps = 22/460 (4%)

Query: 20  QCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEK 79
               P+ F V++YGCQMNV+DS R+  +    GY+R  +  DAD++V NTC +RE A  K
Sbjct: 20  DTPAPRTFEVRTYGCQMNVHDSERLSGLLEQAGYQRAGAGVDADIVVFNTCAVRENADNK 79

Query: 80  VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL 139
           +Y  L  +   K +       + + V GC+AQ + + +LR++P V+VV G      LP L
Sbjct: 80  LYGNLSHLAPRKQAD----PQMQIAVGGCLAQKDRDAVLRKAPWVDVVFGTHNIGSLPTL 135

Query: 140 LERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
           L+RAR  +   V+   S+ +    L       +R+    A+++I  GC+  CTFC+VP  
Sbjct: 136 LDRARHNRVAQVEIAESLREFPSALP-----ASRESAYAAWVSISVGCNNTCTFCIVPSL 190

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG----EKCTFSDLLYSL 254
           RG E+ R    V+ E + L+D GV EITLLGQNVNA+     D     ++  F+ LL + 
Sbjct: 191 RGKEVDRRPGDVLAEVQALVDQGVLEITLLGQNVNAYGVSFADPTEARDRGAFAKLLRAC 250

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
             I GL R+R+T+ HP + +D +I+A      + P LH+P+QSGSDRIL++M R + A  
Sbjct: 251 GRIDGLERVRFTSPHPAEFTDDVIEAMAQTSNVCPTLHMPLQSGSDRILRAMRRSYRADR 310

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
           Y  IIDR+R+  P  AI++D IVGFPGET++DF+AT+D+V+   ++ AF+F+YS R GTP
Sbjct: 311 YLGIIDRVRTAIPHAAITTDLIVGFPGETEEDFQATLDVVEAARFSSAFTFQYSKRPGTP 370

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEK---GKLVG 430
            + +  Q+ + V +ER   L +         N A +G+ +E+L+    G++     ++ G
Sbjct: 371 AAELEGQIPKAVVSERYQRLIELQERISWEENRAQIGREVELLVATGEGRKDAATARMSG 430

Query: 431 RSPWLQSVVLN----SKNHNIGDIIKVRITDVKISTLYGE 466
           R+   + V         +   GDI+   +T      L  +
Sbjct: 431 RARDGRLVHFAPGALGADIRPGDIVVTTVTGAAPHHLIAD 470


>gi|119489699|ref|ZP_01622458.1| tRNA-i(6)A37 modification enzyme MiaB [Lyngbya sp. PCC 8106]
 gi|119454436|gb|EAW35585.1| tRNA-i(6)A37 modification enzyme MiaB [Lyngbya sp. PCC 8106]
          Length = 452

 Score =  437 bits (1125), Expect = e-120,   Method: Composition-based stats.
 Identities = 176/458 (38%), Positives = 270/458 (58%), Gaps = 23/458 (5%)

Query: 21  CIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKV 80
              P+R+ + ++GCQMN  DS RM  +    G       ++AD+++ NTC IR+ A  KV
Sbjct: 2   TTTPRRYHITTFGCQMNKADSERMAGILEEMGLLFTADPNEADVVLYNTCTIRDNAEHKV 61

Query: 81  YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140
           YS+LGR    K+ +     +L +++AGCVAQ EG+ +LRR P +++V+GPQ   RL ELL
Sbjct: 62  YSYLGRQAKRKHKQ----PNLTLILAGCVAQQEGQTLLRRVPELDLVMGPQHANRLQELL 117

Query: 141 ERARFGKRVVDTD--YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
           E+   G +VV T+  + VED  +          R   VTA++ +  GC++ CT+CVVP  
Sbjct: 118 EQVDEGNQVVATEPIHIVEDITKP--------RRDSNVTAWVNVIYGCNERCTYCVVPNV 169

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG------EKCTFSDLLY 252
           RGIE SR+   +  E  +L   G  EITLLGQN++A  G+ L G       K T +DLL 
Sbjct: 170 RGIEQSRTPEAIRSEMEELGRLGYKEITLLGQNIDA-YGRDLPGSTPEGRHKHTLTDLLS 228

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
            + ++ G+ RLR+ TSHPR  ++ LIKA  +L  +  + H+P QSG ++ILK+M+R +T 
Sbjct: 229 FVHDVPGIERLRFATSHPRYFTERLIKACAELPKVCEHFHIPFQSGDNQILKAMSRGYTH 288

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
            +YR+II+ +R   PD +IS+D IVGFPGET++ F  T+ LVD IG+    +  YSPR G
Sbjct: 289 EKYRRIINTVREYMPDASISADAIVGFPGETEEQFENTLKLVDDIGFDLLNTAAYSPRPG 348

Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGR 431
           TP +    QV ++VKA+RL  L   +  +    +    G+I EVL+E    ++  +++GR
Sbjct: 349 TPAALWENQVPDDVKADRLQQLNHLVGVKAAERSQRYFGRIEEVLVEGENPRDPSQVMGR 408

Query: 432 SPWLQSVVLNSK-NHNIGDIIKVRITDVKISTLYGELV 468
           +   +            G ++KV++T+V+  +L  E +
Sbjct: 409 TRGNRLTFFVGNLAELKGKVLKVKVTEVRPFSLTAEAI 446


>gi|188995206|ref|YP_001929458.1| putative SAM/TRAM family methylase protein [Porphyromonas
           gingivalis ATCC 33277]
 gi|229890595|sp|B2RKG6|MIAB_PORG3 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|188594886|dbj|BAG33861.1| putative SAM/TRAM family methylase protein [Porphyromonas
           gingivalis ATCC 33277]
          Length = 465

 Score =  437 bits (1125), Expect = e-120,   Method: Composition-based stats.
 Identities = 161/446 (36%), Positives = 257/446 (57%), Gaps = 8/446 (1%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ ++++YGCQMNV DS  +  +    GY   +++D+AD I++NTC +R+ A +KV + L
Sbjct: 18  RKLYIETYGCQMNVADSEVVASVMQMDGYSLTDNVDEADTILVNTCSVRDNAEQKVLNRL 77

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
               +L+    +    L++ V GC+A+   EE++R    V+VV GP +Y  LP L+  A 
Sbjct: 78  AYYHSLRKK-RRASSRLVIGVLGCMAERVKEELIREH-HVDVVAGPDSYLDLPNLVGAAE 135

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G++ ++ + S+++ ++ +  +  G     G   F++I  GC+ FC++C+VPYTRG E S
Sbjct: 136 QGEKAINVELSMQETYKDVMPLKMGGVHING---FVSIMRGCNNFCSYCIVPYTRGRERS 192

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R +  +++E R L      E+TLLGQNVN++R +  +G    F DLL +++E    +R+R
Sbjct: 193 REIESILNEVRDLKAKNFREVTLLGQNVNSYRYE-QNGRIIRFPDLLAAVAEAVPDMRIR 251

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +T+ HP+DM D  I        +  ++HLP QSGSD++L+ M R +T   Y   +  IR 
Sbjct: 252 FTSPHPKDMDDEAIAVMARYRNICNHIHLPAQSGSDKMLRVMKRGYTRRWYLDRVAAIRR 311

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN-MLEQVD 383
             PD AISSD   GF  ET++DF AT+ L++++GY  AF FKYS R GT  +  +++ V 
Sbjct: 312 AIPDCAISSDLFCGFHSETEEDFEATLSLMEEVGYDSAFMFKYSERPGTYAARHLVDDVL 371

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNS 442
           E VK  RL  +           N   + +  EVLIE   K    +L GR+   + V+ + 
Sbjct: 372 EEVKLARLDRMIALQNRLSEESNKRDISKTFEVLIEGFSKRSREQLFGRTQQNKVVIFDK 431

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
             H +G  I VRI D   +TL+GE+V
Sbjct: 432 NGHRVGQYIYVRIKDASSATLFGEVV 457


>gi|118580144|ref|YP_901394.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Pelobacter
           propionicus DSM 2379]
 gi|229890588|sp|A1APR6|MIAB_PELPD RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|118502854|gb|ABK99336.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Pelobacter propionicus
           DSM 2379]
          Length = 440

 Score =  437 bits (1125), Expect = e-120,   Method: Composition-based stats.
 Identities = 168/442 (38%), Positives = 257/442 (58%), Gaps = 9/442 (2%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
            +++++GCQMNV DS R+  M    GY        A LI+LNTC +R  A EKVY  L  
Sbjct: 6   VYIETFGCQMNVNDSERILTMLADIGYVPTQEPARARLILLNTCSVRAGAEEKVYRRLEN 65

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           +  LK    +    L++ V GCVAQ EGE +L R P +++V G    + L +++  A  G
Sbjct: 66  LVVLK----RHNSRLIIGVGGCVAQQEGEALLERIPKLDLVFGTHNLHLLNDMVLAAERG 121

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           +R  +T +   D+   L     G  R   +++F+T+ +GC+ +C++C+VPY RG E+SR 
Sbjct: 122 ERKSETSFIDNDQRLDLFPPIRGTAR---ISSFVTVMQGCENYCSYCIVPYVRGPEVSRR 178

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
              ++ E R+L D GV E+ LLGQNVN+  G     E  +F++L+  ++ + G+ R+R+ 
Sbjct: 179 SGDILREVRQLADQGVREVALLGQNVNS-YGLKSSAEP-SFAELIRLVAAVDGIRRIRFF 236

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
           TSHP+DMS  LI   GDL  L   LHLP QSGSD +L  M R +T  EY + +  +R+VR
Sbjct: 237 TSHPKDMSPELIACFGDLPALCSQLHLPAQSGSDNVLARMGRGYTREEYLEKVRALRAVR 296

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           PDI  + D IVGFPGET+++F+ T+ L++++ Y   FSF YSPR GT  + + + +    
Sbjct: 297 PDIVFTGDMIVGFPGETEEEFQETLSLMEEVRYIDLFSFAYSPRPGTRAAELADDLSRGE 356

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHN 446
           K  RL  LQ   +   +  ND  +G    VL+E+ GK  G++ G++   ++V  +     
Sbjct: 357 KQSRLERLQALQKRTTMEINDVLLGTRQTVLVEREGKRPGQISGKADNGRTVNFSGDRSL 416

Query: 447 IGDIIKVRITDVKISTLYGELV 468
           IG  + +RI  V  ++L GEL+
Sbjct: 417 IGTFVDLRIIQVFQNSLLGELL 438


>gi|260885970|ref|ZP_05736252.2| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella tannerae ATCC
           51259]
 gi|260851116|gb|EEX70985.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella tannerae ATCC
           51259]
          Length = 458

 Score =  437 bits (1124), Expect = e-120,   Method: Composition-based stats.
 Identities = 156/456 (34%), Positives = 252/456 (55%), Gaps = 12/456 (2%)

Query: 16  QIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREK 75
              ++  + +   +++YGCQMNV DS  +  +    GYE   ++D+AD + LNTC +R+ 
Sbjct: 11  AAPNKKTM-KHLLIETYGCQMNVADSEVVASVMKMAGYEPTENLDEADAVFLNTCSVRDN 69

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135
           A +++   L  +  L+    K G  L++ V GC+A+   E +L      ++V GP  Y  
Sbjct: 70  AEQRIIHRLDALHALR----KHGRRLIIGVLGCMAERVKEGLLHDH-HADLVAGPDAYLS 124

Query: 136 LPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
           LP+L+ +A  G + ++ + S  + +  +       ++  G   F++I  GC+ FC +C+V
Sbjct: 125 LPDLIAQAEAGHKAMNIELSTSETYRDVVPERVCGSKLSG---FVSIMRGCNNFCHYCIV 181

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-GLDGEKCTFSDLLYSL 254
           PYTRG E SR +  ++ E   L D    E+TLLGQNVN++  +     E   F  LL  +
Sbjct: 182 PYTRGRERSRDVESILREVADLHDKHFKEVTLLGQNVNSYCWQADEQSEAVNFPGLLRRV 241

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
           +     +R+R+ T HP+DMSD  +    +   +  ++HLPVQSGS+RILK MNR++T   
Sbjct: 242 ARAFPDMRIRFVTPHPKDMSDETLHVIAEEPNVCRHIHLPVQSGSNRILKLMNRKYTREW 301

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
           Y   +  IR + P+  +S+D  VG+  ET +D + ++ L++++GY  AF FKYS R GT 
Sbjct: 302 YLDRVAAIRRIVPECGLSTDIFVGYCSETPEDHQESLSLMEEVGYDSAFMFKYSERPGTY 361

Query: 375 GSN-MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRS 432
            S  + + + E VK ERL  L      +    N  C G++ EVLIE   K    +L GR+
Sbjct: 362 ASKHLPDDISEAVKVERLEELIALQNRKSAEANRRCEGKVYEVLIEGTSKRSRDQLFGRT 421

Query: 433 PWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
              + V+ +  NH+ G+ I+VR+T    +TL GE+V
Sbjct: 422 EQNKVVIFDRGNHHPGEFIRVRVTGSSSATLLGEVV 457


>gi|25028399|ref|NP_738453.1| hypothetical protein CE1843 [Corynebacterium efficiens YS-314]
 gi|23493684|dbj|BAC18653.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
          Length = 600

 Score =  437 bits (1124), Expect = e-120,   Method: Composition-based stats.
 Identities = 155/467 (33%), Positives = 256/467 (54%), Gaps = 21/467 (4%)

Query: 13  MVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHI 72
           + ++   +    + + V+++GCQMNV+DS R+  +    GY      D  DLIV NTC +
Sbjct: 91  LPARGNREGTTARTYEVRTFGCQMNVHDSERLSGLLEEAGYTAAGEGDTPDLIVFNTCAV 150

Query: 73  REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT 132
           RE A +++Y  LG +R +K +       + + V GC+AQ + + +++++P V+VV G   
Sbjct: 151 RENADQRLYGTLGNLRAVKENH----PGMQIAVGGCLAQKDKDTVVKKAPWVDVVFGTHN 206

Query: 133 YYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTF 192
              LP LL RA   ++         ++F  +        R+     ++++  GC+  CTF
Sbjct: 207 IASLPTLLNRAEHNQKAEVEIVDSLEQFPSVLPA----KRESAYAGWVSVSVGCNNTCTF 262

Query: 193 CVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE----KCTFS 248
           C+VP  RG E  R    ++ E + L+D GV E+TLLGQNVNA+    +D E    +  FS
Sbjct: 263 CIVPSLRGKEQDRRPGDILAEVQALVDQGVSEVTLLGQNVNAYGVNFVDPELERDRSAFS 322

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
            LL +  +I+GL R+R+T+ HP + +  +I A  +   + P LH+P+QSGSDR+LK M R
Sbjct: 323 KLLRACGDIEGLERVRFTSPHPAEFTSDVIDAMAETPNICPQLHMPLQSGSDRVLKEMRR 382

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
            + + ++  I+D +R+  P  +I++D IVGFPGET++DF+AT+D+V+K  +  A++F+YS
Sbjct: 383 SYRSAKFLAILDEVRAKIPHASITTDIIVGFPGETEEDFQATLDVVEKARFTSAYTFQYS 442

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-- 426
           PR GTP ++   QV + V  ER   L           N   +GQ +E+L++  G  K   
Sbjct: 443 PRPGTPAADYENQVPKKVVQERYERLMALQERICEEENQKFIGQTVELLVQAGGGRKNDA 502

Query: 427 --KLVGRSPWLQSVVLN-----SKNHNIGDIIKVRITDVKISTLYGE 466
             ++ GR+   + V              GD++ V +T+ K   L  +
Sbjct: 503 TKRMSGRARDGRLVHFTPVGTIDGEIRPGDVVTVEVTEAKPFFLIAD 549


>gi|169824439|ref|YP_001692050.1| 2-methylthioadenine synthetase [Finegoldia magna ATCC 29328]
 gi|302380704|ref|ZP_07269169.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Finegoldia magna
           ACS-171-V-Col3]
 gi|229890534|sp|B0S1C0|MIAB_FINM2 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|167831244|dbj|BAG08160.1| 2-methylthioadenine synthetase [Finegoldia magna ATCC 29328]
 gi|302311647|gb|EFK93663.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Finegoldia magna
           ACS-171-V-Col3]
          Length = 461

 Score =  437 bits (1124), Expect = e-120,   Method: Composition-based stats.
 Identities = 170/446 (38%), Positives = 265/446 (59%), Gaps = 14/446 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
            + + ++GCQMN +DS +++ +  + G+E+ +   DAD I+ NTC +RE A  KVY  LG
Sbjct: 26  TYSIITHGCQMNEHDSEKIKTLLENMGFEKSDEKLDADFIIFNTCLVRENAEMKVYGQLG 85

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERA 143
            ++NLK    +E  D+L+ V GC+ Q     + I  + P V++V G      LP L++R 
Sbjct: 86  ALKNLK----RENPDMLIAVCGCMMQTGPARDIIREKYPQVDIVFGVNNINSLPYLIDRH 141

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
               ++V      +D  E ++I      R      ++ I  GC+ FCT+C+VPY RG E 
Sbjct: 142 LSSGKLVVDIERKDDIDEDITI-----KRDNEYVGYVNIMTGCNNFCTYCIVPYARGREQ 196

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SRS+  ++ E ++++D G  +ITLLGQNVN+  GK L+    TF++LL  +++++GL RL
Sbjct: 197 SRSVESILSEVKRMVDQGYKDITLLGQNVNS-YGKTLE-NPVTFTELLTKVNDVEGLERL 254

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+ TSHP+D+SD LI+A G LD +   +HLP Q+GS+ +L+ M+RR+T   Y + +++++
Sbjct: 255 RFLTSHPKDISDELIEAMGKLDKVCENIHLPFQAGSNSVLERMHRRYTKESYLEKVEKLK 314

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
                I  S+D IVGFPGET++DF+ T+D+V K+GY QAF+FKY+ R GT      +QVD
Sbjct: 315 KSVKGITFSTDIIVGFPGETEEDFQDTLDVVRKVGYEQAFTFKYNRRPGTKADLFEDQVD 374

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVLNS 442
           E+VK +RL  L           N + +G I EVLIE   K   + + GR+   + V +  
Sbjct: 375 EDVKQDRLERLLDVAYPIFYEKNKSYLGTIQEVLIEGESKNNPEVMTGRTRTFKLVNVKC 434

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
               IG ++  +I D     L GE+V
Sbjct: 435 DKSYIGKLVNTKIVDFNSFALTGEMV 460


>gi|260206040|ref|ZP_05773531.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Mycobacterium
           tuberculosis K85]
 gi|289575430|ref|ZP_06455657.1| conserved alanine and arginine rich protein [Mycobacterium
           tuberculosis K85]
 gi|289539861|gb|EFD44439.1| conserved alanine and arginine rich protein [Mycobacterium
           tuberculosis K85]
          Length = 512

 Score =  437 bits (1124), Expect = e-120,   Method: Composition-based stats.
 Identities = 168/469 (35%), Positives = 265/469 (56%), Gaps = 20/469 (4%)

Query: 9   GVAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLN 68
           GV    +    +    + + V++YGCQMNV+DS R+  +  + GY R     +AD++V N
Sbjct: 9   GVTGEGAGPPVRRAPARTYQVRTYGCQMNVHDSERLAGLLEAAGYRRATDGSEADVVVFN 68

Query: 69  TCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVV 128
           TC +RE A  ++Y  L  +   K +      D+ + V GC+AQ + + +LRR+P V+VV 
Sbjct: 69  TCAVRENADNRLYGNLSHLAPRKRA----NPDMQIAVGGCLAQKDRDAVLRRAPWVDVVF 124

Query: 129 GPQTYYRLPELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCD 187
           G      LP LLERAR  K   V+   +++     L       +R+    A+++I  GC+
Sbjct: 125 GTHNIGSLPTLLERARHNKVAQVEIAEALQQFPSSLP-----SSRESAYAAWVSISVGCN 179

Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG----E 243
             CTFC+VP  RG E+ RS + ++ E R L+++GV E+TLLGQNVNA+     D      
Sbjct: 180 NSCTFCIVPSLRGREVDRSPADILAEVRSLVNDGVLEVTLLGQNVNAYGVSFADPALPRN 239

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
           +  F++LL +  +I GL R+R+T+ HP + +D +I+A      + P LH+P+QSGSDRIL
Sbjct: 240 RGAFAELLRACGDIDGLERVRFTSPHPAEFTDDVIEAMAQTRNVCPALHMPLQSGSDRIL 299

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           ++M R + A  Y  II+R+R+  P  AI++D IVGFP ET++DF AT+D+V +  +A AF
Sbjct: 300 RAMRRSYRAERYLGIIERVRAAIPHAAITTDLIVGFPWETEEDFAATLDVVRRARFAAAF 359

Query: 364 SFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHG 422
           +F+YS R GTP + +  Q+ + V  ER   L     +  +  N A VGQ +EVL+    G
Sbjct: 360 TFQYSKRPGTPAAQLDGQLPKAVVQERYERLIALQEQISLEANRALVGQAVEVLVATGEG 419

Query: 423 KEK---GKLVGRSPWLQSVVLNS--KNHNIGDIIKVRITDVKISTLYGE 466
           ++     ++ GR+   + V   +       GD+I  ++T+     L  +
Sbjct: 420 RKDTVTARMSGRARDGRLVHFTAGQPRVRPGDVITTKVTEAAPHHLIAD 468


>gi|145224548|ref|YP_001135226.1| RNA modification protein [Mycobacterium gilvum PYR-GCK]
 gi|229890565|sp|A4TCM9|MIAB_MYCGI RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|145217034|gb|ABP46438.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Mycobacterium gilvum
           PYR-GCK]
          Length = 512

 Score =  437 bits (1124), Expect = e-120,   Method: Composition-based stats.
 Identities = 166/460 (36%), Positives = 258/460 (56%), Gaps = 22/460 (4%)

Query: 20  QCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEK 79
               P+ F V++YGCQMNV+DS R+  +    GY+R  +  DAD++V NTC +RE A  K
Sbjct: 16  DTPAPRTFEVRTYGCQMNVHDSERLSGLLEQAGYQRAGAGVDADIVVFNTCAVRENADNK 75

Query: 80  VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL 139
           +Y  L  +   K +       + + V GC+AQ + + +LR++P V+VV G      LP L
Sbjct: 76  LYGNLSHLAPRKQAD----PQMQIAVGGCLAQKDRDAVLRKAPWVDVVFGTHNIGSLPTL 131

Query: 140 LERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
           L+RAR  +   V+   S+ +    L       +R+    A+++I  GC+  CTFC+VP  
Sbjct: 132 LDRARHNRVAQVEIAESLREFPSALP-----ASRESAYAAWVSISVGCNNTCTFCIVPSL 186

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG----EKCTFSDLLYSL 254
           RG E+ R    V+ E + L+D GV EITLLGQNVNA+     D     ++  F+ LL + 
Sbjct: 187 RGKEVDRRPGDVLAEVQALVDQGVLEITLLGQNVNAYGVSFADPTEARDRGAFAKLLRAC 246

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
             I GL R+R+T+ HP + +D +I+A      + P LH+P+QSGSDRIL++M R + A  
Sbjct: 247 GRIDGLERVRFTSPHPAEFTDDVIEAMAQTSNVCPTLHMPLQSGSDRILRAMRRSYRADR 306

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
           Y  IIDR+R+  P  AI++D IVGFPGET++DF+AT+D+V+   ++ AF+F+YS R GTP
Sbjct: 307 YLGIIDRVRTAIPHAAITTDLIVGFPGETEEDFQATLDVVEAARFSSAFTFQYSKRPGTP 366

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEK---GKLVG 430
            + +  Q+ + V +ER   L +         N A +G+ +E+L+    G++     ++ G
Sbjct: 367 AAELEGQIPKAVVSERYQRLIELQERISWEENRAQIGREVELLVATGEGRKDAATARMSG 426

Query: 431 RSPWLQSVVLN----SKNHNIGDIIKVRITDVKISTLYGE 466
           R+   + V         +   GDI+   +T      L  +
Sbjct: 427 RARDGRLVHFAPGALGADIRPGDIVVTTVTGAAPHHLIAD 466


>gi|284992297|ref|YP_003410851.1| RNA modification enzyme, MiaB family [Geodermatophilus obscurus DSM
           43160]
 gi|284065542|gb|ADB76480.1| RNA modification enzyme, MiaB family [Geodermatophilus obscurus DSM
           43160]
          Length = 483

 Score =  437 bits (1124), Expect = e-120,   Method: Composition-based stats.
 Identities = 168/455 (36%), Positives = 254/455 (55%), Gaps = 15/455 (3%)

Query: 17  IVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA 76
             D     + + V++YGCQMNV+DS R+  +  + GY      +DAD++VLNTC +RE A
Sbjct: 2   TTDLQAAGRTYRVRTYGCQMNVHDSERLSGLLEAAGYAAAPEGEDADVVVLNTCAVRENA 61

Query: 77  AEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL 136
             ++Y  LG +R +K+ R      + + V GC+AQ +  EI+RR+P V+VV G      L
Sbjct: 62  DNRLYGNLGHLRPVKDGR----PGMQIAVGGCLAQKDRGEIVRRAPWVDVVFGTHNVGSL 117

Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
           P LLERAR             + F           R    + +++I  GC+  CTFC+VP
Sbjct: 118 PALLERARHNAEAQVEIAEALEVF----PSTLPAKRDSAYSGWVSISVGCNNTCTFCIVP 173

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256
             RG E  R   +++ E + L+D GV E+TLLGQNVNA+  +  D  +  F+DLL +   
Sbjct: 174 ALRGKERDRRPGEILAEVQALVDQGVLEVTLLGQNVNAYGVEFRD--RGAFADLLRATGR 231

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           I GL R+R+T+ HPR+ +D +I A  +   +   LH+P+QSGSD +L+ M R +    Y 
Sbjct: 232 IDGLERVRFTSPHPREFTDDVITAMAETPAVCHQLHMPLQSGSDDVLRRMRRGYRQDRYL 291

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
            IIDR+R+  PD AI++D IVGFPGET+ DF  T+D+V +  ++ AF+F+YS R GTP +
Sbjct: 292 GIIDRVRAAMPDAAITTDIIVGFPGETEADFEQTLDVVRQARFSSAFTFQYSKRPGTPAA 351

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI---EK-HGKEKGKLVGRS 432
            M  Q+ + V  ER L L     E   + N A VG+ +E+L+   E     ++G+L GR+
Sbjct: 352 GMEGQLPKEVVQERYLRLTALQDEISWAENRAQVGRTVELLVAAGEGSKDAQRGRLSGRA 411

Query: 433 PWLQSVVLN-SKNHNIGDIIKVRITDVKISTLYGE 466
              + V    +     GD+++  +T      L  +
Sbjct: 412 RDGRLVHFTAADGVRPGDVVETVVTQAAPHHLVAD 446


>gi|295099816|emb|CBK88905.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Eubacterium cylindroides
           T2-87]
          Length = 477

 Score =  437 bits (1124), Expect = e-120,   Method: Composition-based stats.
 Identities = 169/448 (37%), Positives = 264/448 (58%), Gaps = 16/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +++++ +YGCQ N  DS  +  +  S G+E+  S +D D+I++NTC IR+ A EKV   +
Sbjct: 42  KKYYISTYGCQANERDSETLAGILDSLGFEKSESPEDVDVILINTCAIRQNAEEKVLGEI 101

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G  + L  +      DL++ V GC+AQ EG    +L + P V ++ G    ++LPE+L  
Sbjct: 102 GNFKRLYRA----NKDLVIGVCGCMAQEEGLVNTLLEKYPQVRLLFGTHNIHQLPEMLYS 157

Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
             F K+ V   YS E + +E L +     +R     A++ I  GCDKFCT+C+VPYTRG 
Sbjct: 158 VMFEKKRVVKIYSKEGEVYENLPV-----HRFGKHKAWVNIMYGCDKFCTYCIVPYTRGK 212

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           + SR++ Q++ E ++L D G  EITLLGQNVNA  GK +D     F+ LL  +++I G+ 
Sbjct: 213 QRSRTMDQILFEVKELYDQGYKEITLLGQNVNA-YGKDIDPN-MNFACLLEEVAKI-GIP 269

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHP D SD +I      D +MP++HLP+QSG D ILK M RR+T+  Y ++ ++
Sbjct: 270 RIRFTTSHPWDFSDDMIDVIAKYDNIMPFVHLPLQSGDDEILKRMGRRYTSESYMELFNK 329

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I +    +A+S+D IVGFP E+D+ F  T+++++K  +  AF+F +SPR GTP + M + 
Sbjct: 330 IVTKIDRVAVSTDVIVGFPNESDEQFEHTLEIMEKCKFDNAFTFIFSPRPGTPAARMEDP 389

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440
           +D   K ERL  L     +  +  N A  G++++VL++   K+      G +   + V  
Sbjct: 390 IDFETKKERLARLNTLWNKYALEKNKAYEGKVVKVLVDGFSKKDDHVYSGYTDTNKLVNF 449

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
             +N   GD + V I   K  +L G +V
Sbjct: 450 TGENIQPGDFVDVLIETGKTFSLDGRVV 477


>gi|259507456|ref|ZP_05750356.1| tRNA-I(6)A37 thiotransferase [Corynebacterium efficiens YS-314]
 gi|259164944|gb|EEW49498.1| tRNA-I(6)A37 thiotransferase [Corynebacterium efficiens YS-314]
          Length = 533

 Score =  437 bits (1124), Expect = e-120,   Method: Composition-based stats.
 Identities = 158/468 (33%), Positives = 258/468 (55%), Gaps = 23/468 (4%)

Query: 13  MVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHI 72
           + ++   +    + + V+++GCQMNV+DS R+  +    GY      D  DLIV NTC +
Sbjct: 24  LPARGNREGTTARTYEVRTFGCQMNVHDSERLSGLLEEAGYTAAGEGDTPDLIVFNTCAV 83

Query: 73  REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT 132
           RE A +++Y  LG +R +K +       + + V GC+AQ + + +++++P V+VV G   
Sbjct: 84  RENADQRLYGTLGNLRAVKENH----PGMQIAVGGCLAQKDKDTVVKKAPWVDVVFGTHN 139

Query: 133 YYRLPELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCT 191
              LP LL RA   ++  V+   S+E     L        R+     ++++  GC+  CT
Sbjct: 140 IASLPTLLNRAEHNQKAEVEIVDSLEQFPSVLP-----AKRESAYAGWVSVSVGCNNTCT 194

Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE----KCTF 247
           FC+VP  RG E  R    ++ E + L+D GV E+TLLGQNVNA+    +D E    +  F
Sbjct: 195 FCIVPSLRGKEQDRRPGDILAEVQALVDQGVSEVTLLGQNVNAYGVNFVDPELERDRSAF 254

Query: 248 SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307
           S LL +  +I+GL R+R+T+ HP + +  +I A  +   + P LH+P+QSGSDR+LK M 
Sbjct: 255 SKLLRACGDIEGLERVRFTSPHPAEFTSDVIDAMAETPNICPQLHMPLQSGSDRVLKEMR 314

Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           R + + ++  I+D +R+  P  +I++D IVGFPGET++DF+AT+D+V+K  +  A++F+Y
Sbjct: 315 RSYRSAKFLAILDEVRAKIPHASITTDIIVGFPGETEEDFQATLDVVEKARFTSAYTFQY 374

Query: 368 SPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG- 426
           SPR GTP ++   QV + V  ER   L           N   +GQ +E+L++  G  K  
Sbjct: 375 SPRPGTPAADYENQVPKKVVQERYERLMALQERICEEENQKFIGQTVELLVQAGGGRKND 434

Query: 427 ---KLVGRSPWLQSVVLN-----SKNHNIGDIIKVRITDVKISTLYGE 466
              ++ GR+   + V              GD++ V +T+ K   L  +
Sbjct: 435 ATKRMSGRARDGRLVHFTPVGTIDGEIRPGDVVTVEVTEAKPFFLIAD 482


>gi|164688057|ref|ZP_02212085.1| hypothetical protein CLOBAR_01702 [Clostridium bartlettii DSM
           16795]
 gi|164602470|gb|EDQ95935.1| hypothetical protein CLOBAR_01702 [Clostridium bartlettii DSM
           16795]
          Length = 482

 Score =  437 bits (1124), Expect = e-120,   Method: Composition-based stats.
 Identities = 165/452 (36%), Positives = 270/452 (59%), Gaps = 15/452 (3%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
            + +F++++GCQMN +DS ++  M  + GYE     D+ADLI+ NTC +RE A  KVY  
Sbjct: 38  KKSYFIQTFGCQMNEHDSEKLGAMLNAMGYEPSLMADNADLIIYNTCAVRENAELKVYGN 97

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLE 141
           LG ++ +K    +   +L + V GC+ Q     +EI  +   V++V G    Y+ PELL 
Sbjct: 98  LGHLKLIK----RRNPNLKIAVCGCMMQQPAIVKEIKAKYKHVDLVFGTHNLYKFPELLS 153

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
            +     ++   + V+ +       D    RK  + AF+ I  GC+ FCT+C+VPYTRG 
Sbjct: 154 ESMSSDSILIDVWDVDGEVVEGLRSD----RKFELKAFVNIMYGCNNFCTYCIVPYTRGR 209

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR    +++E ++L+ NG  E+TLLGQNV+++     + ++ TF++LL +++EI GL 
Sbjct: 210 ERSRRPEDIMNEIKELVANGTKEVTLLGQNVDSYGKTLEEEDRMTFAELLRAVNEIDGLE 269

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+ TSHP+D+SD +I A  D D +  +LHLPVQ GS ++LK MNR ++  +Y +I+++
Sbjct: 270 RIRFMTSHPKDISDEVIYAMRDCDKVCEFLHLPVQCGSTKLLKKMNRHYSKEDYLRIVEK 329

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
            ++  P+IA S+D +VGFPGET++D   T+D++ ++ Y  AF+F YS R GTP + M +Q
Sbjct: 330 AKAEVPNIAFSTDIMVGFPGETEEDVEDTLDVIRQVRYDNAFTFIYSKRTGTPAAKMEDQ 389

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVL 440
           + E+VK +R   + + + E     N     +++E+L+E   K +  K  GR+   + V  
Sbjct: 390 IPEDVKHKRFNRVLELVNEISKENNTTHQDEVVEILVEGKSKTDDTKFTGRTRQNKLVNF 449

Query: 441 ---NSKNHNIGDIIKVRITD-VKISTLYGELV 468
              N     IG ++ V+IT+     +L GE+V
Sbjct: 450 SVKNPDADLIGKLVNVKITEAALSFSLNGEMV 481


>gi|303233772|ref|ZP_07320426.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Finegoldia magna
           BVS033A4]
 gi|302495206|gb|EFL54958.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Finegoldia magna
           BVS033A4]
          Length = 461

 Score =  437 bits (1124), Expect = e-120,   Method: Composition-based stats.
 Identities = 169/446 (37%), Positives = 265/446 (59%), Gaps = 14/446 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
            + + ++GCQMN +DS +++ +  + G+E+ +   DAD I+ NTC +RE A  KVY  LG
Sbjct: 26  TYSIITHGCQMNEHDSEKIKTLLENMGFEKSDEKLDADFIIFNTCLVRENAEMKVYGQLG 85

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERA 143
            ++NLK    +E  D+L+ V GC+ Q     + I  + P V++V G      LP L++R 
Sbjct: 86  ALKNLK----RENPDMLIAVCGCMMQTGPARDIIREKYPQVDIVFGVNNINSLPYLIDRH 141

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
               ++V      +D  E ++I      R      ++ I  GC+ FCT+C+VPY RG E 
Sbjct: 142 LSSGKLVVDIERKDDIDEDITI-----KRDNEYVGYVNIMTGCNNFCTYCIVPYARGREQ 196

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SRS+  ++ E +++++ G  +ITLLGQNVN+  GK L+    TF++LL  +++++GL RL
Sbjct: 197 SRSVESILSEVKRMVNQGYKDITLLGQNVNS-YGKTLE-HPVTFTELLTKVNDVEGLERL 254

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+ TSHP+D+SD LI+A G LD +   +HLP Q+GS+ +L+ M+RR+T   Y + +++++
Sbjct: 255 RFLTSHPKDISDELIEAMGKLDKVCENIHLPFQAGSNSVLERMHRRYTKESYLEKVEKLK 314

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
                I  S+D IVGFPGET++DF+ T+D+V K+GY QAF+FKY+ R GT      +QVD
Sbjct: 315 KSVKGITFSTDIIVGFPGETEEDFQDTLDVVRKVGYEQAFTFKYNRRPGTKADLFEDQVD 374

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVLNS 442
           E+VK +RL  L           N + +G I EVLIE   K   + + GR+   + V +  
Sbjct: 375 EDVKQDRLERLLDVAYPIFYEKNKSYLGTIQEVLIEGESKNNPEVMTGRTRTFKLVNVKC 434

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
               IG ++  +I D     L GE+V
Sbjct: 435 DKSYIGKLVNTKIVDFNSFALTGEMV 460


>gi|288801850|ref|ZP_06407292.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella melaninogenica
           D18]
 gi|302346093|ref|YP_003814446.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella melaninogenica
           ATCC 25845]
 gi|288335892|gb|EFC74325.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella melaninogenica
           D18]
 gi|302149644|gb|ADK95906.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella melaninogenica
           ATCC 25845]
          Length = 442

 Score =  437 bits (1124), Expect = e-120,   Method: Composition-based stats.
 Identities = 158/450 (35%), Positives = 270/450 (60%), Gaps = 15/450 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ ++++YGCQMNV DS  +  +    GY+   + D+AD I LNTC +RE A  K+Y+ L
Sbjct: 2   KKLYIETYGCQMNVADSEVVASVMKMAGYDVCENEDEADAIFLNTCSVRENAENKIYNRL 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             +    ++  K+G DL++ V GC+A+   +++++     N+V GP +Y  LP+++ +  
Sbjct: 62  EAL----HAEQKKGRDLILGVLGCMAERVRDDLIQNH-HANLVCGPDSYLNLPDMIAQCE 116

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G   +D + S  + +  +     G NR  G   F++I  GC+ FC +C+VP+TRG E S
Sbjct: 117 NGTNALDIELSTTETYRDVIPQRIGGNRVSG---FVSIMRGCNNFCHYCIVPFTRGRERS 173

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC----TFSDLLYSLSEIKGL 260
           R +  ++ E + L D G  E+TLLGQNVN+  G   +G++     +F++LL+ +++    
Sbjct: 174 RDVESILKEVKDLHDKGFKEVTLLGQNVNS-YGLLPNGKRPENGVSFAELLHKVAQSVPD 232

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
           +R+R+TTS+P DM++ +I+A      L  ++H P QSGS+ +LK MNR++T  +Y + + 
Sbjct: 233 MRVRFTTSNPEDMTEDIIEAVATEPNLCNHIHFPAQSGSNSVLKVMNRKYTREDYLEKVA 292

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN-ML 379
            IR + PD  +++D  +G+  E+++DF+ T+ L+ ++G+  AF FKYS R GT  +  + 
Sbjct: 293 AIRRLVPDCGLTTDIFIGYHNESEEDFQQTLSLMREVGFDSAFMFKYSERPGTYAAKHLP 352

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSV 438
           + V E  K  RL  L +   E     N    G+  ++LIE+ GK    +L+GR+P  ++V
Sbjct: 353 DNVSEEEKIRRLNELIRLQTEISAEQNKKDEGKEFDILIERFGKRSREQLMGRTPQNKAV 412

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           V+   NH+IG+ ++VRIT    +TL+GE V
Sbjct: 413 VMPRGNHHIGETVRVRITGSTSATLFGEEV 442


>gi|258645507|ref|ZP_05732976.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Dialister invisus DSM
           15470]
 gi|260402861|gb|EEW96408.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Dialister invisus DSM
           15470]
          Length = 478

 Score =  437 bits (1124), Expect = e-120,   Method: Composition-based stats.
 Identities = 153/456 (33%), Positives = 257/456 (56%), Gaps = 10/456 (2%)

Query: 15  SQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIRE 74
             I+ +    +++F+++YGCQMN  D+ R+       GY   + +DDAD+++LNTC IR+
Sbjct: 30  RTILKEVSFDKKYFIETYGCQMNESDTERISGQLEELGYVPADILDDADVVILNTCSIRQ 89

Query: 75  KAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYY 134
            A EKVY  +G ++ LK         +L+ +AGC+AQ    +++ R P+++ V+GP   +
Sbjct: 90  NAEEKVYGKIGEVKKLKGK----KPGVLLGIAGCMAQENKGKLIERMPVIDFVIGPYHIH 145

Query: 135 RLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCV 194
            L +++  +R G        +  +        +    RK  + A++ I +GC+KFCT+C+
Sbjct: 146 DLKDIV--SRRGAEGSHVVMTQMNPNRVNDYSELHSVRKSRIFAWVPIMQGCNKFCTYCI 203

Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL 254
           VPY RG E SR++  +  E  KL   G  EITLLGQNVN++     DG    F  L++++
Sbjct: 204 VPYVRGRETSRTIDDICREIEKLAREGYKEITLLGQNVNSYGLDFHDG--TDFGSLIHAI 261

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
            +I G+ R+RY TSHP+DM+  ++ A      ++ ++HLPVQ G++ IL+ MNR +T   
Sbjct: 262 DKIDGIKRVRYMTSHPKDMTFGMVDAMAASPKVVRHMHLPVQHGANEILRRMNRGYTIER 321

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
           +++++  +R   P I +++D I GFPGET+D    T+ L+ ++ +  A++F YSPR GTP
Sbjct: 322 FKELLKYVREKMPGITVTTDLITGFPGETEDMHEETLTLLKEMKFDSAYTFIYSPRRGTP 381

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSP 433
            + M  QV + V   RL  +     E  +S N    G++  V+ E   K       GR+ 
Sbjct: 382 AARMTNQVSDAVCHRRLQEIMNVENEISLSLNKEMEGKVYTVIAEGETKQNPDNWFGRTS 441

Query: 434 WLQSVVLN-SKNHNIGDIIKVRITDVKISTLYGELV 468
             + V+   + + ++GDI+KVR+   +   L G +V
Sbjct: 442 GNKMVIFPKAGSLSVGDILKVRVDTAQTWILKGTIV 477


>gi|21672691|ref|NP_660758.1| hypothetical protein BUsg426 [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
 gi|25091587|sp|Q8K9C2|MIAB_BUCAP RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|21623331|gb|AAM67969.1| hypothetical 53.7 kDa protein [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
          Length = 439

 Score =  437 bits (1123), Expect = e-120,   Method: Composition-based stats.
 Identities = 185/447 (41%), Positives = 281/447 (62%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQG-YERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           +  ++K++GCQMN YDS  +       G Y     ++ AD+++LNTC IREKA EKV+  
Sbjct: 2   KYIYIKTWGCQMNEYDSSMITVFLEKTGRYLITKEVEKADILILNTCSIREKAQEKVFHQ 61

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LKN       D+++ V GCVA  EG+EI +R+  V++V G QT ++L +++++ 
Sbjct: 62  LGRWKKLKNK----KPDVIIAVGGCVATQEGKEIFKRANYVDIVFGTQTLHKLAQMIDKV 117

Query: 144 RFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
              +R ++D  +   +KF           +K G TA ++I EGC+K+C+FCVVPYTRG E
Sbjct: 118 EKNRRFMIDISFPQLEKFNY-----SLEPKKTGYTASISIMEGCNKYCSFCVVPYTRGHE 172

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           ISR    ++ E   L +NGV EI LLGQNVNA+RG+  +G+ C FS+LL  +SEI G+ R
Sbjct: 173 ISRPSDDILLEISILAENGVREINLLGQNVNAYRGRTFNGKICFFSELLRLVSEIDGIDR 232

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTS+P + +D +I+ + D   L+ +LHLPVQSGS+RIL+ M R +T  EY +II+++
Sbjct: 233 IRFTTSNPLEFTDDIIEVYQDTPKLVSFLHLPVQSGSNRILQLMKRSYTTEEYEKIIEKL 292

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
              R +I ISSDFIVGFP E+++DF+ T++ + KI +  +FSF YS R GTP S M + +
Sbjct: 293 ILARSNIQISSDFIVGFPSESEEDFQKTINFIKKINFDMSFSFIYSSRPGTPASEMKDNI 352

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441
           D   K +RL  LQ  + +Q +S++   +     VL+E   K+   +L G++   + V   
Sbjct: 353 DLQEKKKRLYTLQNCINKQTMSWSRKMLKSTQSVLVEGVSKKNIMELYGKTENNRIVTFK 412

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
             +  IG  IK++I  V   +L GEL+
Sbjct: 413 GSHKMIGKFIKLKIKKVHTHSLQGELI 439


>gi|229890689|sp|Q8FPD5|MIAB_COREF RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
          Length = 524

 Score =  437 bits (1123), Expect = e-120,   Method: Composition-based stats.
 Identities = 158/468 (33%), Positives = 258/468 (55%), Gaps = 23/468 (4%)

Query: 13  MVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHI 72
           + ++   +    + + V+++GCQMNV+DS R+  +    GY      D  DLIV NTC +
Sbjct: 15  LPARGNREGTTARTYEVRTFGCQMNVHDSERLSGLLEEAGYTAAGEGDTPDLIVFNTCAV 74

Query: 73  REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT 132
           RE A +++Y  LG +R +K +       + + V GC+AQ + + +++++P V+VV G   
Sbjct: 75  RENADQRLYGTLGNLRAVKENH----PGMQIAVGGCLAQKDKDTVVKKAPWVDVVFGTHN 130

Query: 133 YYRLPELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCT 191
              LP LL RA   ++  V+   S+E     L        R+     ++++  GC+  CT
Sbjct: 131 IASLPTLLNRAEHNQKAEVEIVDSLEQFPSVLP-----AKRESAYAGWVSVSVGCNNTCT 185

Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE----KCTF 247
           FC+VP  RG E  R    ++ E + L+D GV E+TLLGQNVNA+    +D E    +  F
Sbjct: 186 FCIVPSLRGKEQDRRPGDILAEVQALVDQGVSEVTLLGQNVNAYGVNFVDPELERDRSAF 245

Query: 248 SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307
           S LL +  +I+GL R+R+T+ HP + +  +I A  +   + P LH+P+QSGSDR+LK M 
Sbjct: 246 SKLLRACGDIEGLERVRFTSPHPAEFTSDVIDAMAETPNICPQLHMPLQSGSDRVLKEMR 305

Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           R + + ++  I+D +R+  P  +I++D IVGFPGET++DF+AT+D+V+K  +  A++F+Y
Sbjct: 306 RSYRSAKFLAILDEVRAKIPHASITTDIIVGFPGETEEDFQATLDVVEKARFTSAYTFQY 365

Query: 368 SPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG- 426
           SPR GTP ++   QV + V  ER   L           N   +GQ +E+L++  G  K  
Sbjct: 366 SPRPGTPAADYENQVPKKVVQERYERLMALQERICEEENQKFIGQTVELLVQAGGGRKND 425

Query: 427 ---KLVGRSPWLQSVVLN-----SKNHNIGDIIKVRITDVKISTLYGE 466
              ++ GR+   + V              GD++ V +T+ K   L  +
Sbjct: 426 ATKRMSGRARDGRLVHFTPVGTIDGEIRPGDVVTVEVTEAKPFFLIAD 473


>gi|34763969|ref|ZP_00144862.1| tRNA 2-methylthioadenosine synthase [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
 gi|27886260|gb|EAA23543.1| tRNA 2-methylthioadenosine synthase [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
          Length = 435

 Score =  437 bits (1123), Expect = e-120,   Method: Composition-based stats.
 Identities = 154/445 (34%), Positives = 256/445 (57%), Gaps = 12/445 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++  + +YGCQMNV +S +++ +F + GY+    +D+AD + LNTC +RE AA +++  L
Sbjct: 2   KKASIITYGCQMNVNESAKIKKIFQNLGYDVTEEIDNADAVFLNTCTVREGAATQIFGKL 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           G ++ LK          ++ V GC AQ +GEE++++ PI+++V+G Q   R+P+ +E+  
Sbjct: 62  GELKALKEK-----RGTIIGVTGCFAQEQGEELVKKFPIIDIVMGNQNIGRIPQAIEKIE 116

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
             +   +     ED+                 TA ++I  GC+ FCTFC+VPY RG E S
Sbjct: 117 NNESTHEVYTDNEDEL----PPRLDAEFGSDQTASISITYGCNNFCTFCIVPYVRGRERS 172

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
             L ++V +  + +  G  EI LLGQNVN++     +G+   F+ LL  + +++G   +R
Sbjct: 173 VPLEEIVKDVEQYVKKGAKEIVLLGQNVNSYGKDFKNGD--NFAKLLDEICKVEGDYIVR 230

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           + + HPRD +D +I      D +   LHLP+QSGS +IL+ M R +T  +Y  ++D+I+S
Sbjct: 231 FVSPHPRDFTDDVIDVIAKNDKISKCLHLPLQSGSSQILRKMGRGYTKEKYLALVDKIKS 290

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             P +A+++D IVGFPGET++DF  T+D+V K+ +  ++ F YS R GT  + M  Q++E
Sbjct: 291 KIPGVALTADIIVGFPGETEEDFLDTIDVVQKVSFDNSYMFMYSIRKGTKAAIMDNQIEE 350

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVLNSK 443
            VK ERL  L +   +     +     +I++VL+E   K+  + L GR+   + V+    
Sbjct: 351 AVKKERLQRLMEVQNKCSFEESSKYKDRIVKVLVEGPSKKNKEVLSGRTSTNKVVLFKGN 410

Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468
               G  + V+I + K  TLYGE+V
Sbjct: 411 LGLKGQFVNVKINECKTWTLYGEIV 435


>gi|206900889|ref|YP_002250798.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Dictyoglomus thermophilum
           H-6-12]
 gi|229890516|sp|B5YE40|MIAB_DICT6 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|206739992|gb|ACI19050.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Dictyoglomus thermophilum
           H-6-12]
          Length = 440

 Score =  437 bits (1123), Expect = e-120,   Method: Composition-based stats.
 Identities = 161/447 (36%), Positives = 254/447 (56%), Gaps = 13/447 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           +P ++++ +YGCQMN  DS ++  +  + GY     M++AD+I+LNTC +RE+A EKV+ 
Sbjct: 1   MP-KYYIITYGCQMNKSDSEKVAGILENLGYTPSEKMEEADIILLNTCSVRERAEEKVFG 59

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            LG +R LK    K   +LL+ + GC+AQ   EE++ + P V+ V+G   +  LP++LE 
Sbjct: 60  KLGELRKLK----KRNQNLLIGIFGCMAQRMKEELIEKFPHVDFVLGSYKFTELPKILES 115

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
               K+VV      ED      +      R+    A++ I  GC+ FCT+C+VPY RG E
Sbjct: 116 LDGKKKVVLA----EDIPSPQDVDFRVIKRENKFQAWIPIIYGCNNFCTYCIVPYLRGRE 171

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR   +++ E   L   GV E+TLLGQNV+++   G D      +DLL  +  I  + R
Sbjct: 172 KSRDPEEIIREVEYLASQGVVEVTLLGQNVDSY---GKDLGNVDLADLLVEIHRIPRIKR 228

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+ TSHPRD+SD LI+       + P+ HLP+Q+GSDRIL+ M R +T  EY+ +I++I
Sbjct: 229 IRFLTSHPRDVSDKLIRVVATHPKVCPHWHLPLQAGSDRILRRMGRGYTYSEYKALIEKI 288

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+  P  + S+D IVGFPGE ++DF AT   +++I +       YS R GTP +N  + +
Sbjct: 289 RAEIPKASFSTDIIVGFPGEEEEDFLATRRALEEIKFDTVNLAIYSKRPGTPAANYEDLI 348

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVLN 441
               K      L+   R+     N + VG+   VL E+   +  + L GR+   + V   
Sbjct: 349 PYETKKRWFDELENLQRKIIYEKNLSRVGKEEIVLAEEVNPKNPRELSGRTENYRLVFFE 408

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
           ++   IG  + V+IT+ ++ +L GE++
Sbjct: 409 AEKELIGKFLLVKITEARLWSLKGEVI 435


>gi|167754516|ref|ZP_02426643.1| hypothetical protein CLORAM_00017 [Clostridium ramosum DSM 1402]
 gi|167705348|gb|EDS19927.1| hypothetical protein CLORAM_00017 [Clostridium ramosum DSM 1402]
          Length = 481

 Score =  437 bits (1123), Expect = e-120,   Method: Composition-based stats.
 Identities = 170/445 (38%), Positives = 260/445 (58%), Gaps = 14/445 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +++++++YGCQ N  DS  +  +  S  Y+    + +AD+IVLNTC IRE A EKV+  +
Sbjct: 44  KKYYIQTYGCQANERDSETLSGILESMSYQPTTEIKEADVIVLNTCAIRENAEEKVFGKV 103

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQ--AEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
           G ++NLK    K   +L+  + GC+AQ       IL + P V+++ G    +RLPELL+ 
Sbjct: 104 GYVKNLK----KTNPNLIFAMCGCMAQEEVVVNRILEKHPHVDLIFGTHNIHRLPELLKD 159

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           A + K ++   +S E      + V     R     A++ I  GC+KFCT+C+VPYTRG E
Sbjct: 160 ALYSKEMIVEVWSKEGDVIENAPVR----RDNKYKAWVNIMYGCNKFCTYCIVPYTRGKE 215

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR    ++ E  +L+  G  EITLLGQNVN+  GK L GE   FS+LL  +++   + R
Sbjct: 216 RSRLAKDIIKEVEELVAEGYQEITLLGQNVNS-YGKDL-GEDYNFSNLLEDVAK-TNIPR 272

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP D S+ +IK     D +MP +HLPVQSG++ +LK M RR++  +Y ++  +I
Sbjct: 273 IRFTTSHPWDFSEDMIKIIAKYDNIMPAIHLPVQSGNNEVLKLMGRRYSREQYLELFHKI 332

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           +   PD  +++D IVGFP ET + +  T+ L  +  Y  A++F YSPR GTP + M++ V
Sbjct: 333 KEYIPDCTVTTDIIVGFPNETHEQYLDTLSLYQECEYDLAYTFVYSPRAGTPAAKMVDNV 392

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLN 441
             + K +RL  L + + E+    N   + +I+EVL+E    K+   L G +   + V   
Sbjct: 393 ASDEKDQRLYKLNEIVNEKAYKQNQRFLNKIVEVLVEGTSKKDDSMLTGYTRHQKLVNFK 452

Query: 442 SKNHNIGDIIKVRITDVKISTLYGE 466
               +IG IIKV+IT+ K   L GE
Sbjct: 453 GDPKDIGKIIKVKITEAKTWALKGE 477


>gi|166031818|ref|ZP_02234647.1| hypothetical protein DORFOR_01519 [Dorea formicigenerans ATCC
           27755]
 gi|166028271|gb|EDR47028.1| hypothetical protein DORFOR_01519 [Dorea formicigenerans ATCC
           27755]
          Length = 470

 Score =  436 bits (1122), Expect = e-120,   Method: Composition-based stats.
 Identities = 169/458 (36%), Positives = 257/458 (56%), Gaps = 14/458 (3%)

Query: 14  VSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIR 73
           V +  ++   P  F V ++GCQMN  DS ++  +    GYE   S ++AD ++ NTC +R
Sbjct: 24  VRKEAEEAGRPMTFCVTTFGCQMNARDSEKLRGILLEIGYEEA-SEEEADFVIFNTCTVR 82

Query: 74  EKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQ 131
           E A  +VY  LG++++ K    K+   + + + GC+ Q     E++      V+++ G  
Sbjct: 83  ENANTRVYGRLGQLKSHK----KKNPHMKIALCGCMMQEPEVVEKLRTSYRFVDLIFGTH 138

Query: 132 TYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCT 191
             Y+  EL+     G R+V   +   DK     + D   +RK    + + I  GC+ FC+
Sbjct: 139 NIYKFAELITAVYEGGRMVIDIWKDTDKI----VEDLPNDRKYSFKSGVNIMFGCNNFCS 194

Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLL 251
           +C+VPY RG E SR    +V E  +L+ +GV E+ LLGQNVN+  GK L+ E   F++LL
Sbjct: 195 YCIVPYVRGRERSRKPEAIVREIERLVADGVTEVMLLGQNVNS-YGKNLE-EPLPFAELL 252

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
             + +I+GL R+R+ TSHP+D+SD LI+  G    +  +LHLPVQSGS RILK MNR +T
Sbjct: 253 QKIEQIEGLHRIRFMTSHPKDLSDELIEVMGKSKKICKHLHLPVQSGSSRILKKMNRHYT 312

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
             +Y +++D+IR+  PDI++++D IVGFPGET++DF  T+D+V K+ Y  AF+F YS R 
Sbjct: 313 KEQYLELVDKIRAAVPDISLTTDIIVGFPGETEEDFLETLDIVRKVRYDSAFTFIYSKRT 372

Query: 372 GTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-G 430
           GTP + M +QV E V  +R   L K+++           G + EVL+E        +V G
Sbjct: 373 GTPAATMEDQVPEEVVKDRFDRLLKEVQTIAAEVCAVHEGTVQEVLVESVSDHDDHMVTG 432

Query: 431 RSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           R      V        IGD + V++   K     GE V
Sbjct: 433 RLSNNILVHFRGDASMIGDYVNVKLDQCKGFYYIGEQV 470


>gi|282901705|ref|ZP_06309621.1| tRNA-i(6)A37 modification enzyme MiaB [Cylindrospermopsis
           raciborskii CS-505]
 gi|281193468|gb|EFA68449.1| tRNA-i(6)A37 modification enzyme MiaB [Cylindrospermopsis
           raciborskii CS-505]
          Length = 447

 Score =  436 bits (1122), Expect = e-120,   Method: Composition-based stats.
 Identities = 181/456 (39%), Positives = 277/456 (60%), Gaps = 23/456 (5%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           +P+R+ + ++GCQMN  DS RM  +    G+E   +  +A+LIV NTC IR+ A +KVYS
Sbjct: 4   LPRRYHITTFGCQMNKADSERMAGILEDMGFEWSENPHNANLIVYNTCTIRDNAEQKVYS 63

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
           +LGR    K+       DL +VVAGCVAQ EG+ +LRR P +++V+GPQ   RL +LL+ 
Sbjct: 64  YLGRQAKRKHQE----PDLTLVVAGCVAQQEGQALLRRVPELDLVMGPQYANRLKDLLDS 119

Query: 143 ARFGKRVVDTD--YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
              G +VV T+  + +ED  +          R   VTA++ +  GC++ CT+CVVP  RG
Sbjct: 120 VFAGNQVVATEEVHILEDITQP--------RRDSQVTAWVNLIYGCNERCTYCVVPNVRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG------EKCTFSDLLYSL 254
           +E SR+   + +E   L   G  EITLLGQN++A  G+ L G         TF+DLLY +
Sbjct: 172 VEQSRTPEAIREEMEILGQQGYREITLLGQNIDA-YGRDLPGSTAEGRHLHTFTDLLYYV 230

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
            ++ G+ R+R+ TSHPR  ++ LIKA  +L  +  + H+P QSG + ILK+M+R +T  +
Sbjct: 231 HDVPGIERIRFATSHPRYFTERLIKACAELPKICEHFHIPFQSGDNEILKAMSRGYTQEK 290

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
           YR+II+ IRS  PD +IS+D IVGFPGET+  F  T+ LVD IG+    +  YSPR GTP
Sbjct: 291 YRRIINTIRSYMPDASISADAIVGFPGETEIQFENTLQLVDDIGFDHLNTAAYSPRPGTP 350

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSP 433
            +    Q+ E +K++RL  L   +  +    +   +G++ EVL+E ++ K++ +++GR+ 
Sbjct: 351 AALWDNQLSEEIKSDRLQRLNHLVNVKAAQRSQRYLGRMEEVLVEDQNPKDQSQVMGRTR 410

Query: 434 WLQSVVLNSK-NHNIGDIIKVRITDVKISTLYGELV 468
             +        N   G +++V+I +V+  +L GELV
Sbjct: 411 GNRLAFFQGDINQLRGKMVRVQIQEVRAFSLSGELV 446


>gi|229890670|sp|Q2RZF8|MIAB_SALRD RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
          Length = 503

 Score =  436 bits (1122), Expect = e-120,   Method: Composition-based stats.
 Identities = 162/453 (35%), Positives = 262/453 (57%), Gaps = 9/453 (1%)

Query: 19  DQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAE 78
           D     ++ ++++YGCQMNV DS  +  +    GY        AD+++LNTC IRE A  
Sbjct: 36  DATAGDKQVYIETYGCQMNVNDSGIVASVLEESGYGLTRDQAAADVVLLNTCAIRENAER 95

Query: 79  KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPE 138
           K+ + L  +R+ K    K  G+L++ V GC+A+   E++L +  +V+VVVGP  Y  LP+
Sbjct: 96  KIRARLSMLRSEKE---KRDGELMLGVLGCMAERLREKLLEQEDLVDVVVGPDAYRDLPQ 152

Query: 139 LLERARF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197
           LL  A   G+  V+ + S ++ +E +  V        GV+A+++I  GCD  CTFCVVP+
Sbjct: 153 LLYEADATGQAAVNVELSKQETYEDIQPVRYD---SNGVSAYVSIMRGCDNMCTFCVVPF 209

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257
           TRG E SR ++ ++ E  +L + G  E+TLLGQNVN++     DG   +F++L+  +S +
Sbjct: 210 TRGREESRPVTTILSEVARLAEEGYKEVTLLGQNVNSYHYTDADGTSVSFAELVDRVSRV 269

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
              +R+RY+TSHP+D +D L+K H D   +  Y+HLPVQ G+  +L  M R +T  EY  
Sbjct: 270 SPEMRVRYSTSHPKDCTDDLLKVHRDRPNVCNYIHLPVQHGNTEVLDRMRRTYTREEYLA 329

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS- 376
           + +R + + P +++S+D I GF GET+     T+ L++++ Y  A+ FKYS R  T  + 
Sbjct: 330 LTERAKELCPGVSLSTDLIAGFCGETEAQHEDTLSLMEEVRYDHAYMFKYSERPQTYAAR 389

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLVGRSPWL 435
              + V E+ K  RL  + +   +     N+A VG++  VL+E   K+   +  GR+   
Sbjct: 390 KYEDDVPEDTKQRRLEEIIELQNQHAKESNEAEVGRVHTVLVEGPSKKSDAQFFGRTDTN 449

Query: 436 QSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           + VV + +++  GD ++VRI D   STL G  +
Sbjct: 450 KGVVFDREDYEKGDYVRVRIEDCTSSTLLGTAI 482


>gi|257126661|ref|YP_003164775.1| RNA modification enzyme, MiaB family [Leptotrichia buccalis
           C-1013-b]
 gi|257050600|gb|ACV39784.1| RNA modification enzyme, MiaB family [Leptotrichia buccalis
           C-1013-b]
          Length = 441

 Score =  436 bits (1122), Expect = e-120,   Method: Composition-based stats.
 Identities = 164/448 (36%), Positives = 259/448 (57%), Gaps = 10/448 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + +R  + +YGCQMNV +S +M+ M  + GY     +++ DL+ LNTC +RE AA KVY 
Sbjct: 1   MEKRATIITYGCQMNVNESAKMKQMLQTMGYNMTEDIENTDLVFLNTCTVREGAAVKVYG 60

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            LG ++ +K  +    G +++ V GC+AQ   +E ++++P V++V+G Q   R+P++LER
Sbjct: 61  KLGDLKRIKEEK---DGKMIIGVTGCLAQEVRDEFIKKTPYVDLVLGNQNIGRIPDILER 117

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
              G+         ED+           +    + A ++I  GC+ +CTFC+VPY RG+E
Sbjct: 118 IESGEDTHIVMVDDEDEL----PTRVDADFGDDIVASISITYGCNNYCTFCIVPYVRGME 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            S  L++++ +  +    G  EI  LGQNVN+  G      +  F++LL   + ++G   
Sbjct: 174 RSVPLNEIIRDVEQYTKKGYKEILFLGQNVNS-YGSDFANGQDNFAELLEQSANVEGDFW 232

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           ++Y + HP+D SD +I        +   LHLP+QSGS +IL SMNR +T  E+  +  +I
Sbjct: 233 IKYVSPHPKDFSDEVIDVIARNPKIARMLHLPLQSGSTKILDSMNRGYTKEEFIALAKKI 292

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           +   PDI +++D IVGFPGETD+DF+ TMD+V+++G+  AF F YS R GTP + M EQV
Sbjct: 293 KEKIPDIGLTTDIIVGFPGETDEDFQDTMDVVNEVGFENAFMFMYSKRTGTPAATMEEQV 352

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVLN 441
           DE  K ERL  L +    +    +   +GQ ++VL+E   ++  + L GRS   + ++  
Sbjct: 353 DEQTKNERLQQLMRLQNMKAKEESQKYLGQTVKVLVEGPSRKNPEMLTGRSSTHKIILFK 412

Query: 442 SK-NHNIGDIIKVRITDVKISTLYGELV 468
           S      G  + V+I D K  TLYGE+V
Sbjct: 413 SDRKDLKGQFVNVKIYDAKTWTLYGEMV 440


>gi|325859700|ref|ZP_08172830.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Prevotella denticola CRIS
           18C-A]
 gi|325482626|gb|EGC85629.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Prevotella denticola CRIS
           18C-A]
          Length = 442

 Score =  436 bits (1121), Expect = e-120,   Method: Composition-based stats.
 Identities = 155/450 (34%), Positives = 264/450 (58%), Gaps = 15/450 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ ++++YGCQMNV DS  +  +    GY+   + ++AD I LNTC +RE A  K+Y  L
Sbjct: 2   KKLYIETYGCQMNVADSEVVASVMKMAGYDVCENEEEADAIFLNTCSVRENAENKIYHRL 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             +    ++  K+G  L++ V GC+A+   +++++     N+V GP +Y  LP+++ +  
Sbjct: 62  EAL----HAEQKKGRRLILGVLGCMAERVRDDLIQNH-HANLVCGPDSYLNLPDMIAQCE 116

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G   +D + S  + +  +     G NR  G   F++I  GC+ FC +C+VP+TRG E S
Sbjct: 117 NGMNAMDIELSTTETYRDVVPQRIGGNRVSG---FVSIMRGCNNFCHYCIVPFTRGRERS 173

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC----TFSDLLYSLSEIKGL 260
           R +  ++ E   L D G  E+TLLGQNVN+  G   +G +     +F++LL  +++    
Sbjct: 174 RDVESILKEVHDLHDKGFKEVTLLGQNVNS-YGLLPNGRRPENGTSFAELLRKVAQSVPD 232

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
           +R+R+TTS+P DM++ +++A      L  ++H P QSGS+ +LK MNR++T  +Y   + 
Sbjct: 233 MRVRFTTSNPEDMTEDIVEAIAAEPNLCNHIHFPAQSGSNNVLKLMNRKYTREDYLAKVA 292

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN-ML 379
            IR + PD  +++D  +G+  ET++DF+ T+ L+ ++G+  AF FKYS R GT  +  + 
Sbjct: 293 AIRRLVPDCGLTTDIFIGYHNETEEDFQQTLSLMREVGFDSAFMFKYSERPGTYAARHLP 352

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSV 438
           + V E+ K  RL  L +   E     N    G+  ++LIE+ GK    +L+GR+P  ++V
Sbjct: 353 DNVPEDEKIRRLNELIRLQTEISAEQNRKDEGREFDILIERFGKRSREQLMGRTPQNKAV 412

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           V+    H+IG+ ++VRIT    +TL+GE V
Sbjct: 413 VIARGGHHIGETVRVRITGSTSATLFGEEV 442


>gi|297539312|ref|YP_003675081.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Methylotenera sp. 301]
 gi|297258659|gb|ADI30504.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Methylotenera sp. 301]
          Length = 456

 Score =  436 bits (1121), Expect = e-120,   Method: Composition-based stats.
 Identities = 190/449 (42%), Positives = 276/449 (61%), Gaps = 14/449 (3%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           P++ F+K++GCQMN YDS RM DM  +  G     + +DAD+I+LNTC +REKA +KV+S
Sbjct: 18  PKKVFIKTFGCQMNEYDSSRMADMLNATDGMVETLTPEDADVILLNTCSVREKAEDKVFS 77

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            LGR   LK    K   +L++ V GCVA  EG+ I++R+P V+VV GPQT +RLP++++ 
Sbjct: 78  HLGRFIPLK----KANPNLVIGVGGCVASQEGDNIIKRAPYVDVVFGPQTLHRLPDMIKS 133

Query: 143 ARFGKRVV-DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           ++       D  +   +KF+ L        R  G +AFL+I EGC K+C+FCVVPYTRG 
Sbjct: 134 SQSSGVSQVDISFPEIEKFDHLPP-----PRIEGASAFLSIMEGCSKYCSFCVVPYTRGE 188

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E+SR    ++ EA +L + GV EITLLGQNVNA+R +  D E    + L+  ++EI  + 
Sbjct: 189 EVSRPFEAILTEAAQLAEQGVKEITLLGQNVNAYRAQYNDLE-ADLAMLIEYIAEIPQVE 247

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHP +MS  LI    ++  L   LHLPVQ+GSDR+L +M R +TA +++  I +
Sbjct: 248 RIRFTTSHPNEMSQRLIDCFANIPKLAVQLHLPVQAGSDRVLMAMKRNYTALQFKSTIRK 307

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R   P++  +SDFI+GFPGE++ +F AT  L+  +G+  +FSF YSPR GTP S + ++
Sbjct: 308 LRVANPNLTFTSDFIIGFPGESEAEFEATAKLMQDVGFDYSFSFLYSPRPGTPASYLADE 367

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVL 440
             + VK  RL  LQ    E   S +   +G I  VLIE    K   +L G++   + V +
Sbjct: 368 TSQEVKLARLTKLQAINEELGKSISTQMLGTIQRVLIESASWKNANELAGKTDNNRIVDI 427

Query: 441 NSKNHNIGDIIKVRITDVK-ISTLYGELV 468
                 I   + VRIT+V     L GE+V
Sbjct: 428 AGDKSLIHTFVNVRITNVSNPKRLRGEIV 456


>gi|183981582|ref|YP_001849873.1| 2-methylthioadenine synthetase, MiaB [Mycobacterium marinum M]
 gi|229890403|sp|B2HGN2|MIAB1_MYCMM RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB 1; AltName: Full=tRNA-i(6)A37 methylthiotransferase
           1
 gi|183174908|gb|ACC40018.1| 2-methylthioadenine synthetase, MiaB [Mycobacterium marinum M]
          Length = 529

 Score =  436 bits (1121), Expect = e-120,   Method: Composition-based stats.
 Identities = 162/480 (33%), Positives = 249/480 (51%), Gaps = 29/480 (6%)

Query: 7   LIGVAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIV 66
           +                 + + V++ GC MN +DS RM  +    GY + +    ADL+V
Sbjct: 7   VTERPPATRNDTAGNATARTYEVRTLGCLMNAHDSERMAGLLEDAGYIKADPGAPADLVV 66

Query: 67  LNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNV 126
            NTC +RE A  K+Y  L  +  +K SR      + + V GC+AQ +   +L R+P V+V
Sbjct: 67  FNTCAVRENADNKLYGSLAHLAPIKASR----PGMQIAVGGCLAQKDRHIVLDRAPWVDV 122

Query: 127 VVGPQTYYRLPELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEG 185
           V G      LP LLER+R  +   V+   S+      L        R     A+++I  G
Sbjct: 123 VFGTHNIGSLPVLLERSRHNQDAQVEILESLRTFPSALPAA-----RDSAYAAWVSISVG 177

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C+  CTFC+VP  RG E  R    ++ E + L++ GV E+TLLGQNVN++     D +  
Sbjct: 178 CNNSCTFCIVPSLRGKEADRRPGDILAEVQALVEQGVLEVTLLGQNVNSYGVNFADPDPS 237

Query: 246 T-----------FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP 294
           T           F+ LL +   I+GL R+R+T+ HP + +D +I A  +   + P+LH+P
Sbjct: 238 TGEEPLPRDRGAFAQLLRACGRIEGLERIRFTSPHPAEFTDDVILAMAETPAVCPHLHMP 297

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           +QSGSD+ILK+M R +    Y  IID++R+  P  AI++D IVGFPGET+ DF  T+D+V
Sbjct: 298 LQSGSDQILKAMRRSYRRDRYLGIIDKVRAAIPHAAITTDIIVGFPGETEHDFEQTLDVV 357

Query: 355 DKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQII 414
            K  +  AF+F+YSPR GTP ++M +Q+ +NV  +R   L        +  N + VG   
Sbjct: 358 QKARFTSAFTFQYSPRPGTPAADMPDQIPKNVVQQRFERLVALQERISLESNRSLVGTRQ 417

Query: 415 EVLIE-KHGKEK---GKLVGRSPWLQSVVLNSKNH----NIGDIIKVRITDVKISTLYGE 466
           E+L+    G++     ++ GR+   + V     +       GD++ V ITD     L  +
Sbjct: 418 ELLVVAGEGRKNATTARISGRARDGRLVHFRPDSADGSVRPGDLVDVEITDAAPHHLIAD 477


>gi|253583333|ref|ZP_04860531.1| tRNA 2-methylthioadenosine synthase [Fusobacterium varium ATCC
           27725]
 gi|251833905|gb|EES62468.1| tRNA 2-methylthioadenosine synthase [Fusobacterium varium ATCC
           27725]
          Length = 436

 Score =  436 bits (1121), Expect = e-120,   Method: Composition-based stats.
 Identities = 154/447 (34%), Positives = 262/447 (58%), Gaps = 16/447 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++  + +YGCQMNV +S +++ +F + GYE   +++++D I LNTC +RE AA ++Y  L
Sbjct: 2   KKASIITYGCQMNVNESAKIKKIFQNIGYEITENIEESDAIFLNTCTVREGAATQIYGKL 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE--R 142
           G ++++K          ++ + GC AQ +G+E+L++ P +++++G Q   R+P+ ++   
Sbjct: 62  GELKHIKEK-----RGSIIGITGCFAQEQGKELLKKFPQIDIIMGNQNIGRIPQAIDDIE 116

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            +  K ++ TD       E         +     TA ++I  GC+ FCT+C+VPY RG E
Sbjct: 117 HKTNKHIIYTD------CEDELPPRLDADFDSKKTASISITYGCNNFCTYCIVPYVRGRE 170

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            S  L +++ + ++ ++ G  EI LLGQNVN++     +G+   F+ LL  + +++G   
Sbjct: 171 RSVPLDEIIHDVKQYVEKGYKEIILLGQNVNSYGKDFKNGD--NFAKLLEEICKVEGDFL 228

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+ + HPRD SD +I      D +   LHLP+QSGS RILK MNR +T  +Y  + ++I
Sbjct: 229 VRFISPHPRDFSDEVIDVIAKNDKIAKSLHLPLQSGSTRILKMMNRGYTKEQYIALAEKI 288

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           +   P +A+++D IVGFPGET++DF  T+D+V +I +  +F F YS R GT  ++M  Q+
Sbjct: 289 KEKIPGVALTADIIVGFPGETEEDFLDTLDVVKRIQFENSFMFMYSIRQGTKAADMDNQI 348

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRSPWLQSVVLN 441
           D  VK ERL  L +      ++ ++   G+I+ +L+E   K+ K  L GR+   + V+  
Sbjct: 349 DSEVKKERLQRLIEVQNSCSLAESETYRGKIVRILVEGESKKNKDVLTGRTSTNKIVLFK 408

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                 G  + V+I D K  TLYG++V
Sbjct: 409 GDKSLEGTFVNVKINDCKTWTLYGDIV 435


>gi|258515352|ref|YP_003191574.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Desulfotomaculum
           acetoxidans DSM 771]
 gi|257779057|gb|ACV62951.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Desulfotomaculum
           acetoxidans DSM 771]
          Length = 451

 Score =  436 bits (1121), Expect = e-120,   Method: Composition-based stats.
 Identities = 174/444 (39%), Positives = 261/444 (58%), Gaps = 14/444 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +++ + ++GCQMN +DS  +  +  ++GY + +  +DAD+I+LNTC IRE A  KVY  L
Sbjct: 11  KKYLIITFGCQMNEHDSEILAGILHNKGYIKTDKQEDADIILLNTCCIRETAESKVYGML 70

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAE--GEEILRRSPIVNVVVGPQTYYRLPELLER 142
           GR+R LK    K   DL++ V GC+ Q     +++ +R P V+++ G    + L +LL++
Sbjct: 71  GRLRRLK----KSNPDLVLGVCGCMTQQAEAAKKLRQRFPYVDLIFGTHNSHLLSDLLDK 126

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
               +  V   +S          V     R  G+ A + I  GC+ FCT+C+VPY RG E
Sbjct: 127 VMEKREPVLDVWSDVAPVTGELPVQ----RVSGIKALVNITYGCNNFCTYCIVPYVRGRE 182

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SRS   ++ E   L+  G  E+TLLGQNVN+  GK L      F+DLL  L +  G+ R
Sbjct: 183 RSRSPEDILQEVGGLVIAGYKEVTLLGQNVNS-YGKDLK-NPLDFADLLLMLED-TGIER 239

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +RY TSHPRD SD LI+       +  + HLPVQ+GS+RIL+ MNR +T   Y +++D+I
Sbjct: 240 IRYMTSHPRDFSDKLIQVIAKSKKVCEHFHLPVQAGSNRILRLMNRGYTRENYLELVDKI 299

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R   P   I++D IVGFPGET+ DF AT+DL++K+    A++F Y+ R GTP +NM EQ+
Sbjct: 300 RCAVPQAGITTDIIVGFPGETEADFAATLDLLEKVRCYSAYTFVYNKRSGTPAANMQEQI 359

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
           +  VK  R+  L K   +  ++ N+A VG+I++VL+E  GK    L GR+   + VV  +
Sbjct: 360 EATVKKARIQELIKMQNKISLADNEAEVGRILDVLVEGPGKTGNNLTGRTRTNKLVVFAA 419

Query: 443 -KNHNIGDIIKVRITDVKISTLYG 465
             N   G  + V+I   ++S L G
Sbjct: 420 QANFLTGQTVPVKIIKGRLSHLDG 443


>gi|255655942|ref|ZP_05401351.1| putative radical SAM protein [Clostridium difficile QCD-23m63]
 gi|296450635|ref|ZP_06892388.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Clostridium difficile
           NAP08]
 gi|296879247|ref|ZP_06903242.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Clostridium difficile
           NAP07]
 gi|296260479|gb|EFH07321.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Clostridium difficile
           NAP08]
 gi|296429790|gb|EFH15642.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Clostridium difficile
           NAP07]
          Length = 478

 Score =  436 bits (1121), Expect = e-120,   Method: Composition-based stats.
 Identities = 167/460 (36%), Positives = 272/460 (59%), Gaps = 14/460 (3%)

Query: 13  MVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHI 72
              +  ++    +  F +++GCQMN +DS ++  M    GY+    ++++DLI+ NTC +
Sbjct: 27  QNEEYFNRTGKRKLVFTQTFGCQMNEHDSEKLCSMLEEMGYQMSMMVEESDLIIYNTCAV 86

Query: 73  REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGP 130
           RE A  KVY  LG++++LK        ++ + V GC+ Q     EE+ ++   V+++ G 
Sbjct: 87  RENAELKVYGNLGQLKHLKGK----NPNMKIAVCGCMMQQPHVVEELRKKYKHVDLIFGT 142

Query: 131 QTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190
              Y+ P+LL  +    +++   + V+ +     I     NRK  + AF+ I  GC+ FC
Sbjct: 143 HNLYKFPQLLTESMNSDKMLVDVWDVDGEV----IEGLRSNRKFELKAFVNIMYGCNNFC 198

Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDL 250
           T+C+VPYTRG E SR+   +++E ++L+ NG  EITLLGQNV++  GK L+    +FS+L
Sbjct: 199 TYCIVPYTRGRERSRTPEDIINEIKELVANGTKEITLLGQNVDS-YGKTLE-NPVSFSEL 256

Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
           L  +++I+G+ R+R+ TSHP+D+SD +I A  D D +  +LHLP+Q GS  +LK MNR +
Sbjct: 257 LRKVNDIEGIERIRFMTSHPKDISDEVIYAIRDCDKVCEFLHLPIQCGSSSLLKKMNRHY 316

Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370
           T   Y +II++ +   P+IA S+D ++GFPGET++D   T+D+V+K+ Y  AF+F YS R
Sbjct: 317 TKEYYLEIIEKAKKEVPEIAFSTDLMIGFPGETEEDLLDTLDVVEKVRYDSAFTFIYSKR 376

Query: 371 LGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLV 429
            GTP + M  Q+ E++K ER   + + +       ND    +I+EVL+E   K    KL 
Sbjct: 377 QGTPAAKMENQIPEDIKHERFNRVLEAVNRISAEINDGYKNRIVEVLVEGRSKNNENKLS 436

Query: 430 GRSPWLQSVVLNSK-NHNIGDIIKVRITDVKISTLYGELV 468
           GR+   + V      +  IG ++ V IT+ +  +L G LV
Sbjct: 437 GRTRQNKLVNFEGGNDDLIGKLVMVEITEPRTFSLNGILV 476


>gi|284929598|ref|YP_003422120.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [cyanobacterium UCYN-A]
 gi|284810042|gb|ADB95739.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [cyanobacterium UCYN-A]
          Length = 448

 Score =  436 bits (1121), Expect = e-120,   Method: Composition-based stats.
 Identities = 170/452 (37%), Positives = 274/452 (60%), Gaps = 23/452 (5%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           + + ++GCQMN  DS RM  +    G++  + +D A+LI+ NTC IR+ A +KVYS+LG+
Sbjct: 9   YHIVTFGCQMNKADSERMAGILEDMGFQWTDVLDQANLILYNTCTIRDSAEQKVYSYLGK 68

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
               K+        L++ VAGCVAQ EGE+ILRR P +++V+GPQ    L +LLE+   G
Sbjct: 69  QAKRKHKD----PSLILAVAGCVAQQEGEKILRRIPELDLVMGPQHVNYLGDLLEQVLKG 124

Query: 147 KRVVDTD--YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            ++V T+  + +ED  +          R   +TA++ I  GC++ C++CVVP  RG+E S
Sbjct: 125 NQIVATEPIHIIEDITKP--------RRASKITAWVNIIYGCNERCSYCVVPSVRGLEQS 176

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG------EKCTFSDLLYSLSEIK 258
           R+   +  E + L   G  E+TLLGQN++A  G+ L G       + TF+DLLY + E+ 
Sbjct: 177 RTPEDICSEIKLLEQQGYKEVTLLGQNIDA-YGRDLPGTTETGRNQYTFTDLLYRIHEVS 235

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
            + R+R+ TSHPR  ++ LI A  +L  +  + H+P QSG + ILK M R +T   YRQ+
Sbjct: 236 NIKRIRFATSHPRYFTERLISACHELPNICEHFHIPFQSGDNDILKKMKRGYTHQRYRQL 295

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           ID++R   P+ +I++D IVGFPGET+  F  T+ LV+ IG+ Q  +  YSPR GTP +  
Sbjct: 296 IDKVRYYMPNASITADAIVGFPGETEQQFENTLKLVEDIGFDQLNTAAYSPRPGTPAATW 355

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQS 437
            EQVD+++K++RL  L   + ++    +   +G+I E+L+E+   KE  +++GR+   + 
Sbjct: 356 SEQVDDDIKSDRLQRLNHLVGQKAAENSRKYLGEIEEILVEQENPKENNQVMGRTRKNRL 415

Query: 438 VVLNSK-NHNIGDIIKVRITDVKISTLYGELV 468
                  +   G+++KV+IT+ +  +L G+++
Sbjct: 416 TFFQGNIDDLRGELVKVKITEARPFSLTGKIL 447


>gi|313892531|ref|ZP_07826118.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Dialister microaerophilus
           UPII 345-E]
 gi|313118928|gb|EFR42133.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Dialister microaerophilus
           UPII 345-E]
          Length = 447

 Score =  435 bits (1120), Expect = e-120,   Method: Composition-based stats.
 Identities = 151/447 (33%), Positives = 258/447 (57%), Gaps = 12/447 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
             ++++  +YGCQMN  D+ R+     + GY   N MD+AD+++LNTC IR+ A EKVY 
Sbjct: 7   TGKKYYTITYGCQMNESDTERINGQLEALGYTPANVMDEADIVILNTCSIRQNAEEKVYG 66

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-E 141
            +G ++ LK         +L+ +AGC+AQ   ++++ R PI++ V+GP   + L +++  
Sbjct: 67  KIGEVKKLKEK----KDGVLLGIAGCMAQESKKKLIERMPIIDFVIGPYHIHDLKDIVTA 122

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           R   G  VV T  + +   +   +     +RK  + A++ I +GC+KFCT+C+VPY RG 
Sbjct: 123 RNAEGAHVVLTKMNPQRVKDYSELT---ASRKSNIFAWVPIMQGCNKFCTYCIVPYVRGR 179

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR +S V+ E ++L  +G  EITLLGQNVN++     +G    FSDL+ +L  + G+ 
Sbjct: 180 ETSRPISDVLKEVKQLAKDGYKEITLLGQNVNSYGLDFRNG--TDFSDLIRALDTVDGIE 237

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+RY TSHPRDM+  ++ A  +   ++  +HLPVQ GS+ +LK MNR +T   Y ++ D 
Sbjct: 238 RIRYMTSHPRDMTFEMVDAIAESPKVVTQMHLPVQHGSNEMLKKMNRGYTIEHYFELFDY 297

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           ++   PD+ +++D I GFPGET++  + T++++ +  +  A++F YSPR GTP + M + 
Sbjct: 298 VKKKIPDVVVTTDLITGFPGETEEMHKETLEILKRARFDSAYTFIYSPRKGTPAARMTDT 357

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVL 440
           V  +++  RL  + +   +  +  N    G+  +V++E   K  K    GR+   + ++ 
Sbjct: 358 VPSDIQHRRLNEIMELQNKISLEINKEMEGKTFQVIVEGPTKQNKDNWFGRTSGNKMIMF 417

Query: 441 N-SKNHNIGDIIKVRITDVKISTLYGE 466
              +   IG  + V +   +   L G+
Sbjct: 418 PYREGLKIGQTLDVTVETAQTWILKGK 444


>gi|257467848|ref|ZP_05631944.1| MIAB protein [Fusobacterium ulcerans ATCC 49185]
 gi|317062137|ref|ZP_07926622.1| tRNA 2-methylthioadenosine synthase [Fusobacterium ulcerans ATCC
           49185]
 gi|313687813|gb|EFS24648.1| tRNA 2-methylthioadenosine synthase [Fusobacterium ulcerans ATCC
           49185]
          Length = 436

 Score =  435 bits (1120), Expect = e-120,   Method: Composition-based stats.
 Identities = 155/447 (34%), Positives = 260/447 (58%), Gaps = 16/447 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++  + +YGCQMNV +S +++ +F + GYE   +++++D I LNTC +RE AA ++Y  L
Sbjct: 2   KKASIITYGCQMNVNESAKIKKIFQNIGYEITENIEESDAIFLNTCTVREGAATQIYGKL 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE--R 142
           G ++++K          ++ + GC AQ +G+E+L++ P +++++G Q   R+P+ ++   
Sbjct: 62  GELKHIKER-----RGSIIGITGCFAQEQGKELLKKFPQIDIIMGNQNIGRIPQAIDDIE 116

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            +  K V+ TD       E         +     TA ++I  GC+ FCT+C+VPY RG E
Sbjct: 117 HKTNKHVIYTD------CEDELPPRLDADFDSKKTASISITYGCNNFCTYCIVPYVRGRE 170

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            S  L +++ + ++  + G  EI LLGQNVN++     +G+   F+ LL  + +++G   
Sbjct: 171 RSVPLDEIIHDVKQYAEKGYKEIILLGQNVNSYGKDFKNGD--NFAKLLEEICKVEGDFL 228

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+ + HPRD SD +I      D +   LHLP+QSGS RILK MNR +T  +Y  + ++I
Sbjct: 229 VRFISPHPRDFSDEVIDVIAKNDKIAKSLHLPLQSGSTRILKMMNRGYTKEQYIALAEKI 288

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           +   P +A+++D IVGFPGET++DF  T+D+V +I +  +F F YS R GT  + M EQ+
Sbjct: 289 KERIPGVALTADIIVGFPGETEEDFLDTLDVVKRIQFENSFMFMYSIRQGTKAAEMDEQI 348

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLN 441
           D  VK ERL  L +      ++ ++  +G+ + +L+E    K K  L GR+   + V+  
Sbjct: 349 DSEVKKERLQRLIEVQNSCSLAESETYMGKTVRILVEGESRKNKDVLTGRTSTNKIVLFK 408

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                 G  + V+I D K  TLYG++V
Sbjct: 409 GDKALEGTFVNVKIYDCKTWTLYGDIV 435


>gi|281421531|ref|ZP_06252530.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella copri DSM
           18205]
 gi|281404603|gb|EFB35283.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella copri DSM
           18205]
          Length = 444

 Score =  435 bits (1120), Expect = e-120,   Method: Composition-based stats.
 Identities = 161/450 (35%), Positives = 261/450 (58%), Gaps = 15/450 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F+++YGCQMNV DS  +  +    GYE     ++AD I LNTC IRE A  K+Y  L
Sbjct: 2   KKLFIETYGCQMNVADSEVVASVMQMAGYEICEKEEEADAIFLNTCSIRENAENKIYHRL 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             +    ++  K+G  +++ V GC+A+   +++++     N+V GP +Y  LP+++ +  
Sbjct: 62  DTL----HAEQKKGRKVILGVLGCMAERVKDDLIQNH-YANLVCGPDSYLNLPDMIAQCE 116

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G   ++ + S  + +  +     G NR  G   F++I  GC+ FC +C+VPYTRG E S
Sbjct: 117 MGTNAINIELSKTETYRDIVPQRIGGNRVSG---FVSIMRGCNNFCHYCIVPYTRGRERS 173

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC----TFSDLLYSLSEIKGL 260
           R    ++ E R L   G  E+TLLGQNVN+  G    G++     +F++LL+ +++    
Sbjct: 174 RDAESILREVRDLQQRGFKEVTLLGQNVNS-YGLSPSGKREEGSLSFAELLHMVAQAVPD 232

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
           +R+R+TTS+P DM++ ++ A  +   L  ++H P QSGS++ILK MNR++T  EY Q I 
Sbjct: 233 MRVRFTTSNPEDMTEDILHAIAEEPNLCKHIHFPAQSGSNKILKLMNRKYTREEYLQRIA 292

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN-ML 379
            I+ + P   I++D  VG+  ET++D + T+ LV ++G+  AF FKYS R GT  +  + 
Sbjct: 293 DIKRIIPGCGITTDIFVGYHDETEEDHQETLSLVKEVGFDSAFMFKYSERPGTYAAKHLP 352

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSV 438
           + V E  K  RL  L K   E     N    G++  +LIE   K    +++GR+   ++V
Sbjct: 353 DNVSEETKIARLNELIKLQTEVSAEQNKKDEGKVFTILIENFSKRSREQMMGRTEQNKAV 412

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           V++  NH+IG+ +KVRIT    +TL+GE V
Sbjct: 413 VIDKGNHHIGEFVKVRITGSTSATLFGEEV 442


>gi|89891819|ref|ZP_01203321.1| 2-methylthioadenine synthetase [Flavobacteria bacterium BBFL7]
 gi|89515974|gb|EAS18639.1| 2-methylthioadenine synthetase [Flavobacteria bacterium BBFL7]
          Length = 490

 Score =  435 bits (1120), Expect = e-120,   Method: Composition-based stats.
 Identities = 167/459 (36%), Positives = 259/459 (56%), Gaps = 21/459 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ +++SYGCQMN  DS  +  +   +G+   N +++ADL+++NTC IR+KA + V   L
Sbjct: 24  RKLYIESYGCQMNFSDSEIVASILSKEGFNTTNVLEEADLVLVNTCSIRDKAEQTVRKRL 83

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            +   +K    ++  ++ V V GC+A+    + L    IV++VVGP  Y  LP L+    
Sbjct: 84  EKYNRVKE---RQNPNMKVGVLGCMAERLKSKFLEEEKIVDMVVGPDAYKDLPNLVAEID 140

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G+  V+   S E+ +  ++ V        GVTAF++I  GCD  CTFCVVP+TRG E S
Sbjct: 141 EGRDAVNVILSKEETYGDIAPVRLN---TNGVTAFVSITRGCDNMCTFCVVPFTRGRERS 197

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK-------------CTFSDLL 251
           R    +++E   L   G  E+TLLGQNV+++   G   +K               F+ LL
Sbjct: 198 RDPQSILEEIADLTSKGFKEVTLLGQNVDSYLWYGGGLKKDFAKATPMAQATAVDFAQLL 257

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
             ++     +R+R+ TS+P+D+SD ++ A  +   +  Y+HLPVQSGSDRILK MNR HT
Sbjct: 258 NQVATAFPNLRVRFATSNPQDISDDVLHAIANHRNICNYIHLPVQSGSDRILKEMNRLHT 317

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
             EY ++IDR+ ++ P+ A+S D I GFP ET++D + T+ L++ + Y   F F YS R 
Sbjct: 318 REEYMRLIDRVHTIIPECAVSQDMITGFPTETEEDHQDTLSLMEYVKYDYGFMFAYSERP 377

Query: 372 GTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLV 429
           GT  +  M + V E+VK+ RL  +    R   +      +G+ +E LIEK  K+   +  
Sbjct: 378 GTMAARKMEDDVPEDVKSRRLNEIIAIQRRTGLERAQYFIGKTVECLIEKESKKSDSQWA 437

Query: 430 GRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           GR+      V   +N+ +GD + V+ITD   +TL GE V
Sbjct: 438 GRNSQNYVAVFPKENYKVGDFVNVKITDCTSATLIGEAV 476


>gi|37523584|ref|NP_926961.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Gloeobacter
           violaceus PCC 7421]
 gi|81708482|sp|Q7NE65|MIAB_GLOVI RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|35214589|dbj|BAC91956.1| glr4015 [Gloeobacter violaceus PCC 7421]
          Length = 441

 Score =  435 bits (1120), Expect = e-120,   Method: Composition-based stats.
 Identities = 163/443 (36%), Positives = 257/443 (58%), Gaps = 16/443 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +   + ++GCQMN  DS RM       GY  V+  D ADL++ NTC IR+ A +KVYS+L
Sbjct: 10  KTACLVTFGCQMNKADSERMAGALTHLGYRIVDESDTADLVLFNTCTIRDNAEQKVYSYL 69

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           G+    K         + +V+AGCVAQ EGE++LRR P +++V+GPQ   RL +LLER  
Sbjct: 70  GQQARRKQRD----PHITLVLAGCVAQQEGEKLLRRVPELDLVMGPQHVNRLSDLLERVA 125

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G++VV T+    +  E ++       R   VTA+  I  GC++ CT+C+VP  RG E S
Sbjct: 126 EGEQVVATE--PIEILEDITKPR----RDSAVTAWANIIYGCNEGCTYCIVPSVRGREQS 179

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R+   +  E  +L  +G  E+TLLGQN++A  G+ +       + LL  +    G+ RLR
Sbjct: 180 RTPEAIKAEICELGASGYKEVTLLGQNIDA-YGRDI---GTNLASLLRFIHNAPGIERLR 235

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           + TSHPR  SD LI    +L  +  + H+P QSG + +L+ M R +T  +YR II++IR+
Sbjct: 236 FATSHPRYFSDELIATCAELPKVCEHFHIPFQSGDNEVLRRMARGYTHEKYRAIIEKIRA 295

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           + PD AIS+D IVGFPGET+  F  ++ LVD++ +    +  YSPR GTP +    Q+D+
Sbjct: 296 ILPDAAISADLIVGFPGETEAQFENSLRLVDELEFDALNTAAYSPRPGTPAARWPGQLDD 355

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLNSK 443
            VK +RL    + + ++    +   +G+  +VL+E+   +++ ++VGR+   + V    +
Sbjct: 356 EVKQDRLQRTNRLVAQKAFERSQRYLGRTEQVLVEETNPRDRSQVVGRTRTNRLVFFAGE 415

Query: 444 NHNI-GDIIKVRITDVKISTLYG 465
              + G ++ V+IT  +  +L G
Sbjct: 416 LAKLRGQLVDVQITAARAFSLTG 438


>gi|327312819|ref|YP_004328256.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Prevotella denticola
           F0289]
 gi|326945460|gb|AEA21345.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Prevotella denticola
           F0289]
          Length = 442

 Score =  435 bits (1120), Expect = e-120,   Method: Composition-based stats.
 Identities = 155/450 (34%), Positives = 264/450 (58%), Gaps = 15/450 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ ++++YGCQMNV DS  +  +    GY+   + ++AD I LNTC +RE A  K+Y  L
Sbjct: 2   KKLYIETYGCQMNVADSEVVASVMKMAGYDVCENEEEADAIFLNTCSVRENAENKIYHRL 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             +    ++  K+G  L++ V GC+A+   +++++     N+V GP +Y  LP+++ +  
Sbjct: 62  EAL----HAEQKKGRRLILGVLGCMAERVRDDLIQNH-HANLVCGPDSYLNLPDMIAQCE 116

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G   +D + S  + +  +     G NR  G   F++I  GC+ FC +C+VP+TRG E S
Sbjct: 117 NGMNAMDIELSTTETYRDVVPQRIGGNRVSG---FVSIMRGCNNFCHYCIVPFTRGRERS 173

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC----TFSDLLYSLSEIKGL 260
           R +  ++ E   L D G  E+TLLGQNVN+  G   +G +     +F++LL  +++    
Sbjct: 174 RDVESILKEVHDLHDKGFKEVTLLGQNVNS-YGLLPNGRRPENGTSFAELLRKVAQSVPN 232

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
           +R+R+TTS+P DM++ +++A      L  ++H P QSGS+ +LK MNR++T  +Y   + 
Sbjct: 233 MRVRFTTSNPEDMTEDIVEAIAAEPNLCNHIHFPAQSGSNNVLKLMNRKYTREDYLAKVA 292

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN-ML 379
            IR + PD  +++D  +G+  ET++DF+ T+ L+ ++G+  AF FKYS R GT  +  + 
Sbjct: 293 AIRRLVPDCGLTTDIFIGYHNETEEDFQQTLSLMREVGFDSAFMFKYSERPGTYAARHLP 352

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSV 438
           + V E+ K  RL  L +   E     N    G+  ++LIE+ GK    +L+GR+P  ++V
Sbjct: 353 DNVPEDEKIRRLNELIRLQTEISAEQNRKDEGREFDILIERFGKRSREQLMGRTPQNKAV 412

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           V+    H+IG+ ++VRIT    +TL+GE V
Sbjct: 413 VIARGGHHIGETVRVRITGSTSATLFGEEV 442


>gi|317504443|ref|ZP_07962422.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella salivae DSM
           15606]
 gi|315664431|gb|EFV04119.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella salivae DSM
           15606]
          Length = 444

 Score =  435 bits (1120), Expect = e-120,   Method: Composition-based stats.
 Identities = 159/452 (35%), Positives = 260/452 (57%), Gaps = 15/452 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + ++ ++++YGCQMNV DS  +  +    GY+   + ++AD I LNTC +RE A  K+Y+
Sbjct: 1   MDKKLYIETYGCQMNVADSEVVASVMKMAGYDVCENEEEADAIFLNTCSVRENAENKIYN 60

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            L  +    ++  K+G  L++ V GC+A+   +++++     ++V GP +Y  LP ++  
Sbjct: 61  RLDTL----HAEQKKGRQLILGVLGCMAERVKDDLIKNH-HASLVCGPDSYLNLPTMIAE 115

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
              G   VDTD S  + +  +     G NR  G   F++I  GC+ FC +C+VPYTRG E
Sbjct: 116 CELGHAAVDTDLSTTETYRDVLPQRIGGNRVSG---FVSIMRGCNNFCHYCIVPYTRGRE 172

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC----TFSDLLYSLSEIK 258
            SR +  ++ E + L D G  E+TLLGQNVN+  G   +G++     +F++LL  +++  
Sbjct: 173 RSRDVESILAEVKDLHDKGFKEVTLLGQNVNS-YGLLPNGKRPENGTSFAELLRKVAQSV 231

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
             +R+R+TTS+P DMS+ ++ A  D   L  ++H P QSGS++ILK MNR++T  +Y   
Sbjct: 232 PDMRVRFTTSNPEDMSEDILHAIADEPNLCKHIHFPAQSGSNKILKLMNRKYTREDYLDK 291

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN- 377
           +  I+ + P   +++D  VG+  ET++D   T+ LV ++GY  AF FKYS R GT  +  
Sbjct: 292 VAAIKRIIPGCGLTTDIFVGYHNETEEDQEQTLSLVKEVGYDSAFMFKYSERPGTYAAKH 351

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQ 436
           + + V E VK  RL  L           N    G+   +L E+  K+    L+GR+   +
Sbjct: 352 LADNVPEEVKIARLNQLIHLQTAISAEQNKKDEGREFVILTERFSKKDRHHLMGRTEQNK 411

Query: 437 SVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           +V++   NH+IG+ IKVRIT    +TL+GE +
Sbjct: 412 AVIVEKGNHHIGEFIKVRITGSTSATLFGEEI 443


>gi|51245779|ref|YP_065663.1| hypothetical protein DP1927 [Desulfotalea psychrophila LSv54]
 gi|81641932|sp|Q6ALW9|MIAB_DESPS RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|50876816|emb|CAG36656.1| conserved hypothetical protein [Desulfotalea psychrophila LSv54]
          Length = 447

 Score =  435 bits (1120), Expect = e-120,   Method: Composition-based stats.
 Identities = 183/448 (40%), Positives = 270/448 (60%), Gaps = 10/448 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + FF+K+YGCQMN+ DS  +  +  + GY   + +  ADL++LNTC IR KA +KV S L
Sbjct: 4   RSFFIKTYGCQMNLRDSEIIAQILNNNGYVETSEIGGADLVLLNTCSIRAKAEQKVMSKL 63

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           G +R  K    K    + + VAGCVAQ EG++I  + P V++V+G Q  Y + ELLER+R
Sbjct: 64  GELRRNK----KINPRMQICVAGCVAQQEGKQIQAKMPHVDLVIGTQYIYAINELLERSR 119

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
               +  T+   +    +      G   +     F+TI +GC+ FCT+CVVPYTRG E+S
Sbjct: 120 TEGPITATNLDDKYVIPQFIPETTGKEHEGEFRKFVTIMQGCNNFCTYCVVPYTRGREVS 179

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL---DGEKCTFSDLLYSLSEIKGLV 261
           RS+  +V+E   L+ +G+ EITLLGQNVN++        D    TFSDLL  ++ ++GL 
Sbjct: 180 RSIKDIVEEITVLVKSGIKEITLLGQNVNSYAQTNTVTEDDTPATFSDLLRQVAAVEGLK 239

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           RLR+TTS+P+D+S+ L++   DLDVL P  HLPVQ+GS+++LK M R++T   Y  ++ +
Sbjct: 240 RLRFTTSNPKDLSNDLMQCFKDLDVLCPQFHLPVQAGSNKVLKEMGRKYTVESYLDLVTQ 299

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R   P+IAI++D IVGFPGETD++F  TM +++ + Y  +FSFKYS R GT  + +  +
Sbjct: 300 LRENCPEIAITTDIIVGFPGETDEEFEETMKMLETVRYHGSFSFKYSDRPGTKANELTNK 359

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           VDE+VK+ RL   Q +  E  +  N   +G   EVLIE+     G++ GR      V   
Sbjct: 360 VDESVKSARLARFQARQDEIGLERNQEYIGTTQEVLIEEL--RDGEIKGRMGTNHIVHAI 417

Query: 442 S-KNHNIGDIIKVRITDVKISTLYGELV 468
              N   GD +   +T     +L G +V
Sbjct: 418 GLTNKKPGDFLMAHVTAAGQHSLRGSIV 445


>gi|313205436|ref|YP_004044093.1| tRNA-i(6)a37 thiotransferase enzyme miab [Paludibacter
           propionicigenes WB4]
 gi|312444752|gb|ADQ81108.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Paludibacter
           propionicigenes WB4]
          Length = 456

 Score =  435 bits (1119), Expect = e-120,   Method: Composition-based stats.
 Identities = 158/446 (35%), Positives = 249/446 (55%), Gaps = 12/446 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F+++YGCQMNV DS  +  +    G+   + + +AD I +NTC IR+ A ++V + L
Sbjct: 20  KKLFIETYGCQMNVADSEVVASIMQMDGFALTDKITEADAIFVNTCSIRDNAEQRVINRL 79

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
                LK    K    L+V V GC+A+   +E++     VN+VVGP  Y  +P L+    
Sbjct: 80  KYFETLKRKNKK----LIVGVVGCMAERVKDELINEY-GVNIVVGPDAYMDIPNLIGSVE 134

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G + ++ D S  + +  +          + ++ F++I  GC+ FC++C+VPYTRG E S
Sbjct: 135 QGNKAINVDLSTTETYSDVLPTRIS----KSISGFISIMRGCNNFCSYCIVPYTRGRERS 190

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R +  ++ E + L      E+TLLGQNVN++R +  DGE   F DLL  ++E    +R R
Sbjct: 191 RDVESILTELKDLQAKNYKEVTLLGQNVNSYRME-KDGEVIEFPDLLAIVAEAAPEMRFR 249

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           ++TSHP+DMSD  ++       L   +HLPVQSGS++ILK MNR++T   Y + I  IR 
Sbjct: 250 FSTSHPKDMSDRTLEVIAQYPNLCKSIHLPVQSGSNKILKLMNRKYTREWYLERIAAIRR 309

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN-MLEQVD 383
           + P+ +IS+D   GF GET++D + T+ L+ ++ +  AF FKYS R GT  +  + + + 
Sbjct: 310 ILPEASISTDVFCGFHGETEEDHQETLSLLREVNFDLAFMFKYSERPGTFAAKNLPDNIS 369

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRSPWLQSVVLNS 442
           E  K  RL  +    RE     N   VG+  EVL+E   K  K +L GR+   + V+   
Sbjct: 370 EEEKLRRLAEIIDLQRELTNQGNQRDVGKTFEVLVEGFSKRSKEQLFGRTSQNKVVIFPR 429

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
               IG+ I+VR+     ++L  E+V
Sbjct: 430 LGRRIGETIQVRVLSASSASLIAEVV 455


>gi|329121178|ref|ZP_08249806.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Dialister micraerophilus
           DSM 19965]
 gi|327470260|gb|EGF15721.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Dialister micraerophilus
           DSM 19965]
          Length = 447

 Score =  435 bits (1119), Expect = e-120,   Method: Composition-based stats.
 Identities = 151/447 (33%), Positives = 258/447 (57%), Gaps = 12/447 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
             ++++  +YGCQMN  D+ R+     + GY   N MD+AD+++LNTC IR+ A EKVY 
Sbjct: 7   TGKKYYTITYGCQMNESDTERINGQLEALGYTPANVMDEADIVILNTCSIRQNAEEKVYG 66

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-E 141
            +G ++ LK         +L+ +AGC+AQ   ++++ R PI++ V+GP   + L +++  
Sbjct: 67  KIGEVKKLKEK----KDGVLLGIAGCMAQESKKKLIERMPIIDFVIGPYHIHDLKDIVTA 122

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           R   G  VV T  + +   +   +     +RK  + A++ I +GC+KFCT+C+VPY RG 
Sbjct: 123 RNAEGAHVVLTKMNPQRVKDYSELT---ASRKSNIFAWVPIMQGCNKFCTYCIVPYVRGR 179

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR +S V+ E ++L  +G  EITLLGQNVN++     +G    FSDL+ +L  + G+ 
Sbjct: 180 ETSRPISDVLKEVKQLAKDGYKEITLLGQNVNSYGLDFRNG--TDFSDLIKALDTVDGIE 237

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+RY TSHPRDM+  ++ A  +   ++  +HLPVQ GS+ +LK MNR +T   Y ++ D 
Sbjct: 238 RIRYMTSHPRDMTFEMVDAIAESPKVVTQMHLPVQHGSNEMLKKMNRGYTIEHYFELFDY 297

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           ++   PD+ +++D I GFPGET++  + T++++ +  +  A++F YSPR GTP + M + 
Sbjct: 298 VKKKIPDVVVTTDLITGFPGETEEMHKETLEILKRARFDSAYTFIYSPRKGTPAARMTDT 357

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVL 440
           V  +++  RL  + +   +  +  N    G+  +V++E   K  K    GR+   + ++ 
Sbjct: 358 VPSDIQHRRLNEIMELQNKISLEINKEMEGKTFQVIVEGPTKQNKDNWFGRTSGNKMIMF 417

Query: 441 N-SKNHNIGDIIKVRITDVKISTLYGE 466
              +   IG  + V +   +   L G+
Sbjct: 418 PYREGLKIGQTLDVTVETAQTWILKGK 444


>gi|257462249|ref|ZP_05626666.1| MIAB protein [Fusobacterium sp. D12]
 gi|317059918|ref|ZP_07924403.1| adenosine tRNA methylthiotransferase [Fusobacterium sp. D12]
 gi|313685594|gb|EFS22429.1| adenosine tRNA methylthiotransferase [Fusobacterium sp. D12]
          Length = 435

 Score =  435 bits (1119), Expect = e-120,   Method: Composition-based stats.
 Identities = 163/447 (36%), Positives = 252/447 (56%), Gaps = 16/447 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++  V +YGCQMNV +S +M+ +F + GYE   ++ ++D I LNTC +RE AA ++Y  L
Sbjct: 2   KKATVITYGCQMNVNESAKMKKIFENLGYEITENIRESDAIFLNTCTVREGAATQIYGKL 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           G +  +K          ++ V GC AQ +G+E+L++ P++++V+G Q   RLP+ +E   
Sbjct: 62  GELMQIKAK-----RGSIIGVTGCFAQEQGKELLKKFPVIDIVMGNQNIGRLPQAIENIE 116

Query: 145 F--GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
               K VV TD+      E         +     TA + I  GC+ FCTFC+VPY RG E
Sbjct: 117 NQTEKHVVFTDH------EDDLPPRLDADFGSDQTASIAISYGCNNFCTFCIVPYVRGRE 170

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            S  L ++V +  + +  G  EI LLGQNVN++     +G+  TF+ LL  + ++ G   
Sbjct: 171 RSVPLEEIVRDVEQYVKKGAKEIMLLGQNVNSYGHDFKNGD--TFARLLTEICKVDGDFI 228

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+ + HPRD +D +I      + +   LHLP+QSGS +ILK MNR +T  +Y  +  +I
Sbjct: 229 VRFVSPHPRDFTDDVIDVIAKEEKIAKCLHLPLQSGSSQILKRMNRGYTKEQYLSLAHKI 288

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           ++  P +A+++D IVGFPGET+ DF  T+++V +I Y  AF F YS R GT  + M EQV
Sbjct: 289 QNRIPGVALTTDIIVGFPGETEQDFLDTLEVVREINYDNAFMFMYSIRQGTRAATMQEQV 348

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVLN 441
            E+ K ERL  L           +    G+++ VL+E   K+  + L GR+   + V+  
Sbjct: 349 PEDTKKERLQKLMDVQARCSYKESQKYQGKVVRVLVEGESKKNKQVLSGRTSTNKIVLFQ 408

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
           +     G  + V I + K  TLYG+LV
Sbjct: 409 APISLKGSFVDVEIYECKTWTLYGKLV 435


>gi|300814699|ref|ZP_07094949.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Peptoniphilus sp. oral
           taxon 836 str. F0141]
 gi|300511172|gb|EFK38422.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Peptoniphilus sp. oral
           taxon 836 str. F0141]
          Length = 467

 Score =  435 bits (1119), Expect = e-120,   Method: Composition-based stats.
 Identities = 183/443 (41%), Positives = 277/443 (62%), Gaps = 13/443 (2%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +  V ++GCQMN +DS +++ +    GY+ +   ++ADL++LNTC +R  A +KVY  LG
Sbjct: 31  KAKVITHGCQMNEHDSEKIKWLLEKMGYKLIEDDNEADLVILNTCSVRHSAEDKVYGQLG 90

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAE--GEEILRRSPIVNVVVGPQTYYRLPELLERA 143
            +++LK        +L V V GC+ Q +   + ++ +   V+++ G    ++LPELL ++
Sbjct: 91  SLKHLKT----TNKNLKVAVCGCMMQRQASRDYVIEKFENVDIIFGTNNIWKLPELLYKS 146

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             G+++      +++K+  L   + G NR     +++ I  GC+ FCTFC+VPYTRG E 
Sbjct: 147 YNGQKL---SMDIQNKYLDLD-NNLGANRLYSYKSYVNIMYGCNNFCTFCIVPYTRGREK 202

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR   ++VDE + LID G  EITLLGQNVN+  G+GL+  K TF+ LLY +++IKG+ R+
Sbjct: 203 SREADEIVDEIKSLIDKGSKEITLLGQNVNS-YGRGLE-NKTTFAQLLYRINDIKGVERI 260

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+ TSHP+D+SD LI A  DLD L  +LHLPVQ+GS RILK MNR++T  +Y + ID+IR
Sbjct: 261 RFMTSHPKDISDELIYAFRDLDHLCNFLHLPVQAGSSRILKLMNRKYTKEDYLRKIDKIR 320

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
            V PDIA+S+D +VGFPGET++DF  T+DLV ++ Y  +F+F YS R GTP +  L QV 
Sbjct: 321 QVNPDIALSTDIMVGFPGETEEDFEETLDLVKRVEYDTSFTFLYSMRSGTPAAKSLNQVP 380

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVLNS 442
           + +K ER   L   L   Q   N   + + ++VL E   K+  + + GR+   + V  N 
Sbjct: 381 DKIKHERFQKLLDILYPIQYEKNKKFINKTVKVLGEDISKKDSRKISGRNDEFKLVNFNG 440

Query: 443 KNHNIGDIIKVRITDVKISTLYG 465
              +IG I+ V+IT V    + G
Sbjct: 441 SAEDIGKIVNVKITSVNSFAMEG 463


>gi|260887308|ref|ZP_05898571.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Selenomonas sputigena
           ATCC 35185]
 gi|330838938|ref|YP_004413518.1| RNA modification enzyme, MiaB family [Selenomonas sputigena ATCC
           35185]
 gi|260862944|gb|EEX77444.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Selenomonas sputigena
           ATCC 35185]
 gi|329746702|gb|AEC00059.1| RNA modification enzyme, MiaB family [Selenomonas sputigena ATCC
           35185]
          Length = 444

 Score =  435 bits (1119), Expect = e-120,   Method: Composition-based stats.
 Identities = 176/446 (39%), Positives = 261/446 (58%), Gaps = 12/446 (2%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
            +R F+  YGCQMN+ D+ RME    + GYER   M  ADLI+LNTC +RE A +KVY  
Sbjct: 8   KKRAFIGVYGCQMNISDAERMEGQLATLGYERTEDMARADLILLNTCCVRETAEDKVYGK 67

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G I+++K +       L+  + GC+AQ EGE ++RR+P ++ V+G    + L   + + 
Sbjct: 68  IGEIKHIKRA----NPALIFGITGCMAQKEGEALIRRAPHIDFVLGTNKVHELKATVRQL 123

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
              +R    D  + D        +    R   ++A++ I  GC+ FCT+C+VPY RG E 
Sbjct: 124 ESARRGPVVDVLLGDAP---LPENVPIERTGRLSAWVPIMYGCNNFCTYCIVPYVRGREH 180

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR    VV E  +    G  EITLLGQNVN++   G D +  +F++LL  +  +KG+ R+
Sbjct: 181 SRRPEDVVREVEEAAAQGFKEITLLGQNVNSY---GRDHKLASFAELLLMVDAVKGVERV 237

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           RY TSHP+D+SD +I A      + P+ HLPVQ GSDRIL++MNR +    YR +++RIR
Sbjct: 238 RYMTSHPKDLSDAVIDAVRQGRHICPHFHLPVQHGSDRILRAMNRVYRKDAYRSLVERIR 297

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           +  PD ++++D IVGFPGET++DF   +D + +I Y  A++F YS R GTP + M  QV+
Sbjct: 298 AAVPDASLTTDLIVGFPGETEEDFGELLDFLREIRYDAAYTFLYSKRSGTPAATMEAQVE 357

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVV-LN 441
           ++VK ERL  L +   E  +  N A  G + EVL E   + ++    GR+   + V+   
Sbjct: 358 DSVKKERLHRLMEVQNEISLEKNAALKGTVQEVLAEGPSRTDEDVWTGRTGTNKIVLWRK 417

Query: 442 SKNHNIGDIIKVRITDVKISTLYGEL 467
                 GDI++VRIT  +   L GEL
Sbjct: 418 KGQETEGDIVRVRITQPQTWVLKGEL 443


>gi|256545241|ref|ZP_05472606.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Anaerococcus vaginalis
           ATCC 51170]
 gi|256399068|gb|EEU12680.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Anaerococcus vaginalis
           ATCC 51170]
          Length = 452

 Score =  435 bits (1119), Expect = e-120,   Method: Composition-based stats.
 Identities = 168/448 (37%), Positives = 263/448 (58%), Gaps = 17/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +++ + ++GCQMN +DS R+  +    GY + +  +DAD I+ NTC +RE A  K+Y  +
Sbjct: 16  KKYNITTFGCQMNEHDSERISYILEDLGYTKTDDRNDADFILFNTCLVRENAELKLYGQV 75

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAE--GEEILRRSPIVNVVVGPQTYYRLPELLER 142
             ++ LK        + ++ V+GC+ Q     E I ++   V+++ G +    LP+LL +
Sbjct: 76  SSLKKLKEE----NPEKIIAVSGCMMQTSVAREVIEKKHKEVDIIFGTKNINSLPDLLFK 131

Query: 143 A-RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
               G+RV+D         + +      YN K    A++ I  GCD FC++C+VP +RG 
Sbjct: 132 YLETGERVIDVSE------DNVKDDYVNYNSKNNFQAYVNIMRGCDNFCSYCIVPQSRGR 185

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR  S +++E   L+ NG  EITLLGQNVN+  G   D    TF +LL   ++I+GL 
Sbjct: 186 EESRRPSHIIEEIENLVKNGYKEITLLGQNVNS-YGNKSDFN-VTFPELLEKCAKIEGLQ 243

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           RLR+TTSHP+D+SD LI+   + D +  Y HLP+QSGSD++LK MNR++   +Y +   +
Sbjct: 244 RLRFTTSHPKDLSDDLIRVIKENDNICNYFHLPMQSGSDKVLKDMNRKYNKEQYLEKARK 303

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           ++   P IAIS+D IVG+P ET++DF+ T+D+  K+G+  AF+FKYSPR  T  + + + 
Sbjct: 304 LKEEIPGIAISTDIIVGYPTETEEDFQETLDVCRKVGFDTAFTFKYSPRPKTKAAKL-DP 362

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVL 440
           +D+ +  +R   L   L       N   VG+++EVL+E   K  K  L GR+   + V +
Sbjct: 363 IDDKIVQDRFDRLLDTLYPIFNEKNKEYVGKVVEVLLESESKNNKNVLTGRTDTFKLVHV 422

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
            +  + IG I+KV+ITD    T+ GELV
Sbjct: 423 KADKNLIGQIVKVKITDNTSFTISGELV 450


>gi|293400769|ref|ZP_06644914.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Erysipelotrichaceae
           bacterium 5_2_54FAA]
 gi|291305795|gb|EFE47039.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Erysipelotrichaceae
           bacterium 5_2_54FAA]
          Length = 479

 Score =  435 bits (1119), Expect = e-120,   Method: Composition-based stats.
 Identities = 175/449 (38%), Positives = 261/449 (58%), Gaps = 16/449 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +++++++YGCQ N  DS  +  +     +  V   + ADLI+LNTC IR+ A +KV   +
Sbjct: 43  KKYYLRTYGCQANERDSETLAGILEELMFTPVEHPEQADLILLNTCAIRKNAEDKVLGEI 102

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G ++ LK    +   DL+  + GC+AQ E   + +L +   VN++ G    +RLPELL  
Sbjct: 103 GSLKRLK----RSNPDLIFGLCGCMAQEEDVVQVLLEKYRHVNLIFGTHNLHRLPELLYE 158

Query: 143 ARFG-KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
              G KR V+      +  E L +      R     A++ I  GCDKFCT+C+VPYTRG 
Sbjct: 159 VMVGHKRSVEVLSKEGEVIENLPV-----RRFGKHKAWVNIMYGCDKFCTYCIVPYTRGK 213

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR++  V+ E R+L  +G  EITLLGQNVN+  GK L  E   F+ LL   ++I G+ 
Sbjct: 214 ERSRAMEDVLQEIRQLKQDGYKEITLLGQNVNS-YGKDLHIEG-GFAKLLEETAKI-GIE 270

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHP D SD +I      D +MP++HLPVQSG D ILK M RR+T+ +Y  +  +
Sbjct: 271 RIRFTTSHPWDFSDEMIDVIARFDNIMPFIHLPVQSGDDEILKIMGRRYTSAQYLTLFHK 330

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I+   P+ AIS+D IVGFP E+++ F+ T+DLV +  +  AF+F YSPR GTP + M + 
Sbjct: 331 IKERMPECAISTDIIVGFPNESEEQFQHTLDLVKECQFDNAFTFIYSPREGTPAARMADS 390

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVL 440
           V   VK  RL  L           N+A +G++++VL++   K+K     G +   + V  
Sbjct: 391 VSLEVKQRRLAELNACWNHYAHVKNEAYLGKVVKVLVDGASKKKANVWSGYTETNKLVNF 450

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELVV 469
             ++   GDI+KV+IT  K  +L GE ++
Sbjct: 451 TGEHVTAGDIVKVKITACKTFSLDGEQIL 479


>gi|257784577|ref|YP_003179794.1| RNA modification enzyme, MiaB family [Atopobium parvulum DSM 20469]
 gi|257473084|gb|ACV51203.1| RNA modification enzyme, MiaB family [Atopobium parvulum DSM 20469]
          Length = 455

 Score =  435 bits (1119), Expect = e-120,   Method: Composition-based stats.
 Identities = 169/458 (36%), Positives = 262/458 (57%), Gaps = 16/458 (3%)

Query: 17  IVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA 76
           I +  +V + + +K++GCQMN++D+ R+  +  + G   V+  DDAD+++  TC +RE A
Sbjct: 2   IENSELVGKTYHIKTFGCQMNLHDTERVSGLLEACGCNEVSDTDDADIVIFMTCSVRENA 61

Query: 77  AEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL 136
            +++Y   G+   + ++     G  +V + GC+AQ +GE++  + P V+VV G      L
Sbjct: 62  DQRLY---GQASAMVSAPTPPSGKRIVAIGGCIAQRDGEKLREKVPAVDVVFGTSALASL 118

Query: 137 PELLERARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
           P LL  A  G+   V  D S E K       D   NR +   A++ I  GC+ FCT+C+V
Sbjct: 119 PALLTSAFRGENDRVAVDISEEGKGFS---TDLPSNRAQQYHAWVPIMTGCNNFCTYCIV 175

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
           PY RG E SR+   V+ E  +L+ +GV EITLLGQNVN+  G+ L G K  F++LL ++ 
Sbjct: 176 PYVRGRERSRTFEAVIGECERLVADGVREITLLGQNVNS-YGRDLYG-KPRFAELLRAVG 233

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
           +  G+ R+R+T+S+P+D++D  I A  +   +MP+LHL VQSGS R+LK MNR +T  EY
Sbjct: 234 Q-TGVERIRFTSSNPKDLTDETIAAMKETPAVMPHLHLAVQSGSTRVLKKMNRSYTREEY 292

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
             ++ R+R+  P +A+S+D IVGFPGET++DF  T+ LV + GY+ A++F YS R GTP 
Sbjct: 293 LDVVSRLRAAIPGLALSTDIIVGFPGETEEDFEETLSLVKEAGYSSAYTFIYSKRPGTPA 352

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPW 434
           +   +     V  ER   L + + +Q    N   +     VL+E   K     +VG S  
Sbjct: 353 AKYEDNTPHEVIQERFDRLAELVAQQAHEANQVDLNTTQAVLVEGTSKRDDTVMVGHSEK 412

Query: 435 LQSVVLN-----SKNHNIGDIIKVRITDVKISTLYGEL 467
            Q+V  N     +    IG I+ V I + +   L G +
Sbjct: 413 NQTVHFNLPEGYTSKDLIGKIVDVHIDEARTWYLRGTM 450


>gi|284050979|ref|ZP_06381189.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Arthrospira
           platensis str. Paraca]
          Length = 452

 Score =  435 bits (1118), Expect = e-120,   Method: Composition-based stats.
 Identities = 171/456 (37%), Positives = 264/456 (57%), Gaps = 19/456 (4%)

Query: 21  CIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKV 80
              P+ + + ++GCQMN  DS RM  +    G   V   + AD+++ NTC IR+ A +KV
Sbjct: 2   TTKPRHYHITTFGCQMNKADSERMAGILDEMGLTFVEDPNQADIVLYNTCTIRDNAEQKV 61

Query: 81  YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140
           YS+LGR    K        +L ++VAGCVAQ EGE +LRR P +++V+GPQ   RL +LL
Sbjct: 62  YSYLGRQAKRKQE----NPNLTLIVAGCVAQQEGEALLRRVPELDLVMGPQHANRLQDLL 117

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           E+   G +VV T+    +  E ++       R   +TA++ +  GC++ CT+CVVP  RG
Sbjct: 118 EQVFEGSQVVATE--PINIVEDITKPR----RDSNITAWVNVIYGCNERCTYCVVPNVRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG------EKCTFSDLLYSL 254
            E SR+   +  E  +L   G  E+TLLGQN++A  G+ L G       + T +DLLY +
Sbjct: 172 TEQSRTPEAIRAEMEELARAGYKEVTLLGQNIDA-YGRDLPGSTPDGRHQHTLTDLLYYV 230

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
            +I G+ R+R+ TSHPR  ++ LI+A  +L  +  + H+P QSG + +LK+M R +T  +
Sbjct: 231 HDIPGIERIRFATSHPRYFTERLIRACAELPKVCEHFHIPFQSGDNDVLKAMARGYTHEK 290

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
           YR+II+ IR   PD +IS+D IVGFPGET+  F  T+ LVD IG+    +  YSPR GT 
Sbjct: 291 YRRIINTIREYIPDASISADAIVGFPGETEAQFENTLKLVDDIGFDLLNTAAYSPRPGTG 350

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSP 433
            +    Q+ E VKA+RL  L + +  + +  +     +I EVL+E    K+  +++GR+ 
Sbjct: 351 AALWENQLSEEVKADRLQRLNRLVNVKAMERSQRYRDRIEEVLVEGTNPKDPSQVMGRTR 410

Query: 434 WLQSVVLNSK-NHNIGDIIKVRITDVKISTLYGELV 468
             +            G+++KV+I +V+  +L GE +
Sbjct: 411 GNRLTFFKGNLAELSGELVKVKIIEVRAFSLTGEPI 446


>gi|325268417|ref|ZP_08135049.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella multiformis
           DSM 16608]
 gi|324989271|gb|EGC21222.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella multiformis
           DSM 16608]
          Length = 442

 Score =  435 bits (1118), Expect = e-120,   Method: Composition-based stats.
 Identities = 155/450 (34%), Positives = 264/450 (58%), Gaps = 15/450 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ ++++YGCQMNV DS  +  +    GY+   + ++AD I LNTC +RE A  K+Y  L
Sbjct: 2   KKLYIETYGCQMNVADSEVVASVMKMAGYDVCENEEEADAIFLNTCSVRENAENKIYHRL 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             +    ++  K+G  L++ V GC+A+   +++++     N+V GP +Y  LP+++ +  
Sbjct: 62  EAL----HAEQKKGRGLILGVLGCMAERVRDDLIQNH-HANLVCGPDSYLNLPDMIAQCE 116

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G   +D + S  + +  +     G NR  G   F++I  GC+ FC +C+VP+TRG E S
Sbjct: 117 NGMNAMDIELSTTETYRDVVPQRIGGNRVSG---FVSIMRGCNNFCHYCIVPFTRGRERS 173

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC----TFSDLLYSLSEIKGL 260
           R +  ++ E   L D G  E+TLLGQNVN+  G   +G +     +F++LL  +++    
Sbjct: 174 RDVESILKEVHDLHDKGFKEVTLLGQNVNS-YGLLPNGRRPENGTSFAELLRKVAQSVPD 232

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
           +R+R+TTS+P DM++ +++A      L  ++H P QSGS+ +LK MNR++T  +Y   + 
Sbjct: 233 MRVRFTTSNPEDMTEDIVEAVAAEPNLCHHIHFPAQSGSNNVLKLMNRKYTREDYLAKVA 292

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN-ML 379
            IR + PD  +++D  +G+  ET++DF+ T+ L+ ++G+  AF FKYS R GT  +  + 
Sbjct: 293 AIRRLVPDCGLTTDIFIGYHNETEEDFQQTLSLMREVGFDSAFMFKYSERPGTYAARHLP 352

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSV 438
           + V E  K  RL  L +   E     N    G+  ++LIE+ GK    +L+GR+P  ++V
Sbjct: 353 DNVPEEEKIRRLNELIRLQTEISAEQNRKDEGREFDILIERFGKRSREQLMGRTPQNKAV 412

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           V+   +H+IG+ ++VRIT    +TL+GE V
Sbjct: 413 VIARGSHHIGETVRVRITGSTSATLFGEEV 442


>gi|254431186|ref|ZP_05044889.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Cyanobium sp. PCC 7001]
 gi|197625639|gb|EDY38198.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Cyanobium sp. PCC 7001]
          Length = 476

 Score =  435 bits (1118), Expect = e-120,   Method: Composition-based stats.
 Identities = 172/453 (37%), Positives = 258/453 (56%), Gaps = 23/453 (5%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           +++ ++GCQMN  DS RM  +  + GY    +  +ADL++ NTC IR+ A +KVYS+LGR
Sbjct: 34  YWITTFGCQMNKADSERMAGILEAMGYREAGAELEADLVLYNTCTIRDNAEQKVYSYLGR 93

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
               K +      +L +VVAGCVAQ EGE +LRR P +++V+GPQ   RL  LL +   G
Sbjct: 94  QAQRKRA----NPNLTLVVAGCVAQQEGEALLRRVPELDLVMGPQHANRLETLLSQVEQG 149

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           ++VV T+       E ++       R   V A++ +  GC++ CT+CVVP  RG E SR 
Sbjct: 150 QQVVATEE--HHILEDITTAR----RDSSVCAWVNVIYGCNERCTYCVVPSVRGQEQSRL 203

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG------EKCTFSDLLYSLSEIKGL 260
              +  E   L   G  E TLLGQN++A  G+ L G       + T +DLL  + +++G+
Sbjct: 204 PEAIRLEMEGLAARGFKETTLLGQNIDA-YGRDLPGITPEGRRRHTLTDLLQFVHDVEGI 262

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+ TSHPR  ++ LI A   L  +  + H+P QSG D +LK+M R +T   YR+I+ 
Sbjct: 263 ERIRFATSHPRYFTERLIDACAALPKVCEHFHIPFQSGDDAVLKAMARGYTVERYRRIVH 322

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           RIR   PD AIS+D IV FPGETD  FR T+ LV++IG+ Q  +  YSPR  TP ++  +
Sbjct: 323 RIRERMPDAAISADVIVAFPGETDAQFRNTLRLVEEIGFDQVNTAAYSPRPNTPAADWPD 382

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVV 439
           Q+ E VK ERL  L   + +Q    +    G+  +VL+E    ++  + +GR+   +   
Sbjct: 383 QLSEAVKVERLRELNALVEQQARRRSARYAGRTEQVLVEGTNPRDPSQRMGRTRTNRLTF 442

Query: 440 L-----NSKNHNIGDIIKVRITDVKISTLYGEL 467
                 + +    GD++ VRI +V+  +L G L
Sbjct: 443 FPALRPDGRAVEPGDLVNVRIEEVRAFSLSGTL 475


>gi|38234029|ref|NP_939796.1| hypothetical protein DIP1448 [Corynebacterium diphtheriae NCTC
           13129]
 gi|81564788|sp|Q6NGR0|MIAB_CORDI RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|38200291|emb|CAE49976.1| Conserved hypothetical protein [Corynebacterium diphtheriae]
          Length = 516

 Score =  435 bits (1118), Expect = e-120,   Method: Composition-based stats.
 Identities = 150/455 (32%), Positives = 252/455 (55%), Gaps = 21/455 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + F V+++GCQMNV+DS R+  +    GY  V   ++ DL+V NTC +RE A +++Y  L
Sbjct: 17  RSFEVRTFGCQMNVHDSERLSGLLEEAGYHAVADGEEPDLVVFNTCAVRENADKRLYGTL 76

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           G++R+ K         + + V GC+AQ + + ++ ++P V+ V G      LP LL R+ 
Sbjct: 77  GQLRSAKEK----NPRMQIAVGGCLAQKDKDTVVAKAPWVDAVFGTHNMGALPSLLSRSE 132

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
             KR         ++F  +        R+     ++++  GC+  CTFC+VP  RG E+ 
Sbjct: 133 HNKRAEVEIVDSLEQFPSVLPA----KRESAYAGWVSVSVGCNNTCTFCIVPSLRGKEVD 188

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE----KCTFSDLLYSLSEIKGL 260
           R    ++ E + L+D GV E+TLLGQNVNA+     D +    +  FS LL +  +I+GL
Sbjct: 189 RRPGDILAEVQALVDQGVSEVTLLGQNVNAYGVNFSDPDIQRDRFAFSKLLRACGKIEGL 248

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            RLR+T+ HP + +  +I A  +   + P LH+P+QSGSD++LK M R + + ++  I++
Sbjct: 249 ERLRFTSPHPAEFTHDVIDAMAETPNVCPQLHMPLQSGSDKVLKEMRRSYRSKKFLGILE 308

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
            +R+  P  +I++D IVGFPGET++DF+ T+++V+K  +  A++F+YSPR GTP ++  +
Sbjct: 309 EVRAKIPHASITTDIIVGFPGETEEDFQETLNVVEKARFTSAYTFQYSPRPGTPAADYAD 368

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG----KLVGRSPWLQ 436
           QV + V  +R   L           N   +G  +E+L++  G  K     ++ GRS   +
Sbjct: 369 QVPKEVVQDRYERLLALQERISTEENAKLIGTEVELLVQASGGRKNDKTQRMTGRSRDGR 428

Query: 437 SVVLN-----SKNHNIGDIIKVRITDVKISTLYGE 466
            V  +       +   GD+I   +T+ K   L  +
Sbjct: 429 LVHFDPQGHVDGDIRPGDVITTVVTEAKPFFLIAD 463


>gi|282882002|ref|ZP_06290643.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Peptoniphilus lacrimalis
           315-B]
 gi|281298032|gb|EFA90487.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Peptoniphilus lacrimalis
           315-B]
          Length = 467

 Score =  435 bits (1118), Expect = e-120,   Method: Composition-based stats.
 Identities = 182/443 (41%), Positives = 277/443 (62%), Gaps = 13/443 (2%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +  V ++GCQMN +DS +++ +    GY+ +   ++ADL++LNTC +R  A +KVY  LG
Sbjct: 31  KAKVITHGCQMNEHDSEKIKWLLEKMGYKLIEDDNEADLVILNTCSVRHSAEDKVYGQLG 90

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAE--GEEILRRSPIVNVVVGPQTYYRLPELLERA 143
            +++LK        +L V V GC+ Q +   + ++ +   V+++ G    ++LPELL ++
Sbjct: 91  SLKHLKT----TNKNLKVAVCGCMMQRQASRDYVIEKFENVDIIFGTNNIWKLPELLYKS 146

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             G+++      +++K+  L   + G NR     +++ I  GC+ FCTFC+VPYTRG E 
Sbjct: 147 YNGQKL---SMDIQNKYLDLD-NNLGANRLYSYKSYVNIMYGCNNFCTFCIVPYTRGREK 202

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR   ++VDE + LID G  EITLLGQNVN+  G+GL+  K +F+ LLY +++IKG+ R+
Sbjct: 203 SREADEIVDEIKSLIDKGSKEITLLGQNVNS-YGRGLE-NKTSFAQLLYRINDIKGVERI 260

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+ TSHP+D+SD LI A  DLD L  +LHLPVQ+GS RILK MNR++T  +Y + ID+IR
Sbjct: 261 RFMTSHPKDISDELIYAFRDLDHLCNFLHLPVQAGSSRILKLMNRKYTKEDYLRKIDKIR 320

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
            V PDIA+S+D +VGFPGET++DF  T+DLV ++ Y  +F+F YS R GTP +  L QV 
Sbjct: 321 QVNPDIALSTDIMVGFPGETEEDFEETLDLVKRVEYDTSFTFLYSMRSGTPAAKSLNQVP 380

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVLNS 442
           + +K ER   L   L   Q   N   + + ++VL E   K+  + + GR+   + V  N 
Sbjct: 381 DKIKHERFQKLLDILYPIQYEKNKKFINKTVKVLGEDISKKDSRKISGRNDEFKLVNFNG 440

Query: 443 KNHNIGDIIKVRITDVKISTLYG 465
              +IG I+ V+IT V    + G
Sbjct: 441 SAEDIGKIVNVKITSVNSFAMEG 463


>gi|113474257|ref|YP_720318.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Trichodesmium
           erythraeum IMS101]
 gi|123057124|sp|Q119H9|MIAB_TRIEI RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|110165305|gb|ABG49845.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Trichodesmium erythraeum
           IMS101]
          Length = 451

 Score =  435 bits (1118), Expect = e-119,   Method: Composition-based stats.
 Identities = 177/453 (39%), Positives = 273/453 (60%), Gaps = 23/453 (5%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + + + ++GCQMN  DS RM  +  + G       + AD+I+ NTC IR+ A +KVYS+L
Sbjct: 6   RHYHITTFGCQMNKADSERMAGILDNMGLISSEDPNKADIILYNTCTIRDNAEQKVYSYL 65

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR    K+ +     DL ++VAGCVAQ EG  +LRR P +++++GPQ   RL +LLE+  
Sbjct: 66  GRQAKRKHKQ----PDLTLIVAGCVAQQEGAALLRRVPELDLIMGPQHANRLQDLLEQVF 121

Query: 145 FGKRVVDTD--YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            G +VV T+  + VED  +          R   +TA++ I  GC++ CT+CVVP  RG+E
Sbjct: 122 NGNQVVATEPIHIVEDITKP--------RRDSKITAWVNIIYGCNEHCTYCVVPSVRGVE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG------EKCTFSDLLYSLSE 256
            SR+   +  E  +L   G  EITLLGQN++A  G+ L G       K TF+DLLY + +
Sbjct: 174 QSRTPEAIRAEMEELGRQGYQEITLLGQNIDA-YGRDLPGVTKEGRNKYTFTDLLYYVHD 232

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           + G+ R+R+ TSHPR  ++ LI+A  +L  +  + H+P QSG +++LK+M R +T  +YR
Sbjct: 233 VPGVERIRFATSHPRYFTERLIRACAELPKVCEHFHIPFQSGDNKLLKAMARGYTHEKYR 292

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
           +IID+IR + PD +IS+D IVGFPGET+  F  T+ LV+ IG+ Q  +  YSPR GTP +
Sbjct: 293 RIIDKIRELMPDASISADAIVGFPGETEAQFENTLKLVEDIGFDQLNTAAYSPRPGTPAA 352

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWL 435
               Q+ E VK++RL  L   +  +    +   +G+I EVL+E  + K   +++GR+   
Sbjct: 353 LWENQLGEEVKSDRLQRLNHLVGVKAADRSQRYMGRIEEVLVEDMNPKNAAQVMGRTRGN 412

Query: 436 QSVVLNSKNHNI-GDIIKVRITDVKISTLYGEL 467
           +          + G ++KV+IT+V+  +L GE+
Sbjct: 413 RLTFFEGDIAQLKGKLVKVKITEVRPFSLTGEV 445


>gi|237737681|ref|ZP_04568162.1| MIAB protein [Fusobacterium mortiferum ATCC 9817]
 gi|229419561|gb|EEO34608.1| MIAB protein [Fusobacterium mortiferum ATCC 9817]
          Length = 444

 Score =  435 bits (1118), Expect = e-119,   Method: Composition-based stats.
 Identities = 151/445 (33%), Positives = 260/445 (58%), Gaps = 12/445 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++  + +YGCQMNV +S +++ MF + GYE  ++++++D+  LNTC +RE AA ++Y  L
Sbjct: 10  KKASIITYGCQMNVNESAKIKKMFQNMGYEITDNIEESDVTFLNTCTVREGAATQIYGKL 69

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           G ++++K         +++ V GC AQ +G E++++ P +++V+G Q   R+P+ ++   
Sbjct: 70  GELKHIKE-----NKGMIIGVTGCFAQEQGIELVKKFPQIDIVMGNQNIGRIPQAIDDIE 124

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G   VD      D  + L       +     TA ++I  GC+ FC +C+VPY RG E S
Sbjct: 125 HG---VDKHLVFTDCEDDLPP-RLDADFDSKKTASISITYGCNNFCAYCIVPYVRGRERS 180

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
             +++++ + R+ ++ G  EI LLGQNVN++  +  +G+   F+ LL  + +++G   +R
Sbjct: 181 VPMTEILHDVRQYVEKGYKEIILLGQNVNSYGKEFKNGD--NFARLLEEICKVEGDFIVR 238

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           + + HPRD +D +I      + +   LHLP+Q+GS  ILK+MNR +T  +Y  + ++I+ 
Sbjct: 239 FVSPHPRDFTDEVIDVIAKNEKIARSLHLPLQAGSSTILKAMNRGYTKEQYIALANKIKE 298

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
               +A+++D IVGFPGET++DF+ T+D+V +I +  +F F YS R GT  + M  Q+DE
Sbjct: 299 RILGVALTADVIVGFPGETEEDFQDTLDVVRQIQFENSFMFMYSIRKGTKAATMENQIDE 358

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVLNSK 443
            VK +RL  L        ++ +   VG+   VL+E   K+  + L GR+   + V+    
Sbjct: 359 AVKKDRLQRLIDVQTACSLAESKTYVGKTFRVLVEGESKKNKEVLSGRTSTNKIVLFKGD 418

Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468
               G  + V+I D K  TLYGE+V
Sbjct: 419 KALEGTFVNVKINDCKTWTLYGEIV 443


>gi|256825582|ref|YP_003149542.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Kytococcus sedentarius
           DSM 20547]
 gi|256688975|gb|ACV06777.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Kytococcus sedentarius
           DSM 20547]
          Length = 510

 Score =  434 bits (1117), Expect = e-119,   Method: Composition-based stats.
 Identities = 163/463 (35%), Positives = 252/463 (54%), Gaps = 27/463 (5%)

Query: 21  CIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGY------ERVNSMDDADLIVLNTCHIRE 74
              P+ + V+++GCQMNV+DS R+  +    GY      E     + AD++V NTC +RE
Sbjct: 3   TATPKTYDVRTHGCQMNVHDSERLSGLLEGAGYTDLDAVEPAERPEVADVVVFNTCAVRE 62

Query: 75  KAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYY 134
            AA K+Y  LG++R  K    +E  DL + V GC+AQ + + I+ R+P V+VV G     
Sbjct: 63  NAANKLYGNLGQLRQAK----RENPDLQIAVGGCLAQKDRDTIVARAPWVDVVFGTHNIG 118

Query: 135 RLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCV 194
            LP LLERAR  +          + F           R    + +++I  GC+  CTFC+
Sbjct: 119 SLPVLLERARHNQEAQVEILEALETFPSTLPTR----RDSAYSGWVSISVGCNNTCTFCI 174

Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL 254
           VP  RG E  R    ++ E R L++ GV EITLLGQNVN +  +   G++  FS LL + 
Sbjct: 175 VPALRGKEKDRRPGDILAEVRALVEQGVVEITLLGQNVNTYGVEF--GDRQAFSKLLRAC 232

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
            EI+GL R+R+T+ HP   +D +I A  +   +MP LH+P+Q+GSD++LK M R + + +
Sbjct: 233 GEIEGLERVRFTSPHPAAFTDDVIDAMAETPNVMPSLHMPLQAGSDKVLKDMRRSYRSKK 292

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
           +  I+DR+R   P  AI++D IVGFPGET++DF  T+ +V+   ++ AF+F+YS R GTP
Sbjct: 293 FLGILDRVREQIPHAAITTDLIVGFPGETEEDFAETLRVVEASRFSSAFTFQYSIRPGTP 352

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI---EK-HGKEKGKLVG 430
            + M +QV + V  +R   L +         N    G+ +EVL+   E     E  ++ G
Sbjct: 353 AAEMADQVPKAVVQDRFDRLIELQERISWEENRTQEGRTVEVLVAPGEGRKDAETHRMSG 412

Query: 431 RSPWLQSVVL-------NSKNHNIGDIIKVRITDVKISTLYGE 466
           R+   + V         +++    GD++ V +T      L  +
Sbjct: 413 RADDNRLVHFALPADLPDAERPRPGDMVTVEVTYGAPHNLIAD 455


>gi|312129884|ref|YP_003997224.1| tRNA-i(6)a37 thiotransferase enzyme miab [Leadbetterella byssophila
           DSM 17132]
 gi|311906430|gb|ADQ16871.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Leadbetterella byssophila
           DSM 17132]
          Length = 464

 Score =  434 bits (1117), Expect = e-119,   Method: Composition-based stats.
 Identities = 164/447 (36%), Positives = 255/447 (57%), Gaps = 11/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ +++SYGCQMN  DS  +  +  S GY   + + +ADLI+LNTC IR+ A ++V + L
Sbjct: 25  KKLYIESYGCQMNFADSEVVASILRSNGYSTTSDVVEADLILLNTCAIRDNAEQRVRNRL 84

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             + + K    K   +L + V GC+A+    + L    +V++VVGP  Y  LP LL    
Sbjct: 85  SILNSNK----KRNPELKIGVLGCMAERLKTKFLEEEKMVDLVVGPDAYRDLPNLLAEVE 140

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G + V+   S E+ +  ++ +        GV+AF++I  GC+  C+FCVVP+TRG E S
Sbjct: 141 EGHKAVNVFLSREETYADITPIRLD---SNGVSAFISIMRGCNNMCSFCVVPFTRGRERS 197

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R    +  EA++L D G  E+TLLGQNV+++  K  + E+ TF++LL  ++ I   +R+R
Sbjct: 198 RDPYSIEKEAKELFDQGYREVTLLGQNVDSYLWKS-ETEQFTFANLLEKIALIHPDLRIR 256

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           ++TSHP+D++D ++      D +  Y+HLP QSGS RIL+ MNR +    Y   IDRIR 
Sbjct: 257 FSTSHPKDITDEVLYTMKKYDNICNYIHLPAQSGSSRILELMNRTYDREWYLGKIDRIRE 316

Query: 325 VR-PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQV 382
           +   +  IS D I GF  ET++D + T+ L+D + +   + F YS R GTP +    + V
Sbjct: 317 ILGEECGISHDLIAGFCTETEEDHQDTLTLMDYVKFDYGYMFYYSERPGTPAAKKYEDDV 376

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVLN 441
            E VK  RL  +  K +E  +  N   VG++  +LIE   K   + L GR+   + VV  
Sbjct: 377 PEEVKKRRLNEIIAKQQEHSLERNQMTVGKVYRILIEGESKRSDEDLCGRTDQNKMVVFP 436

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
            K++  G+ + VRI     +TL GE+V
Sbjct: 437 RKHYKKGEYVNVRILSCSAATLKGEIV 463


>gi|262038865|ref|ZP_06012212.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Leptotrichia goodfellowii
           F0264]
 gi|261747116|gb|EEY34608.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Leptotrichia goodfellowii
           F0264]
          Length = 441

 Score =  434 bits (1117), Expect = e-119,   Method: Composition-based stats.
 Identities = 169/448 (37%), Positives = 267/448 (59%), Gaps = 10/448 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + +R  + +YGCQMNV +S +M+ M  + GYE    ++++DL+ LNTC +RE AA KVY 
Sbjct: 1   MGKRATIITYGCQMNVNESAKMKQMLQTMGYEITEDINESDLVFLNTCTVREGAAVKVYG 60

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            LG ++ +K  +    G++++ V GC+AQ   +E ++++P V++V+G Q   R+P++LER
Sbjct: 61  KLGDLKRIKEEK---NGNMIIGVTGCLAQEVRDEFIKKTPYVDLVLGNQNIGRIPDILER 117

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
              G+         ED+  +    D G +    + A ++I  GC+ +CTFC+VPY RG+E
Sbjct: 118 IEKGEETHIVMVEDEDELPKRVDADFGDD----IVASISITYGCNNYCTFCIVPYVRGME 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            S  L +V+ +       G  EI  LGQNVN+  G  L  E   F+ LL   ++I+G   
Sbjct: 174 RSVPLHEVLRDVEFYTKRGYKEILFLGQNVNS-YGSDLADENDNFATLLNESAKIEGDFW 232

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           ++Y + HP+D +D +I+A  +   +   LHLP+QSGS +IL +MNR +T  E+ Q+  +I
Sbjct: 233 IKYVSPHPKDFNDEVIEAIANNSKISRMLHLPLQSGSTKILNAMNRGYTKEEFIQLAKKI 292

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           +   PDI +++D IVGFPGETD DF+ TMD+V++IG+  AF F YS R GTP + M EQV
Sbjct: 293 KERIPDIGLTTDIIVGFPGETDKDFQDTMDVVEEIGFENAFMFMYSKRTGTPAATMEEQV 352

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVLN 441
           +E  K ERL  L +    +    +   +G++++VL+E   ++  + L GR+   + V+  
Sbjct: 353 NEQTKNERLQQLMRLQNRKAKEESQKYLGKVVKVLVEGPSRKNPEMLTGRTSTHKIVLFR 412

Query: 442 SK-NHNIGDIIKVRITDVKISTLYGELV 468
           S      G  +  +I + K  TLYGELV
Sbjct: 413 SDRKDLKGQFVHTKIYEAKTWTLYGELV 440


>gi|126699594|ref|YP_001088491.1| putative radical SAM protein [Clostridium difficile 630]
 gi|254975583|ref|ZP_05272055.1| putative radical SAM protein [Clostridium difficile QCD-66c26]
 gi|255092971|ref|ZP_05322449.1| putative radical SAM protein [Clostridium difficile CIP 107932]
 gi|255101116|ref|ZP_05330093.1| putative radical SAM protein [Clostridium difficile QCD-63q42]
 gi|255306984|ref|ZP_05351155.1| putative radical SAM protein [Clostridium difficile ATCC 43255]
 gi|255314712|ref|ZP_05356295.1| putative radical SAM protein [Clostridium difficile QCD-76w55]
 gi|255517386|ref|ZP_05385062.1| putative radical SAM protein [Clostridium difficile QCD-97b34]
 gi|255650493|ref|ZP_05397395.1| putative radical SAM protein [Clostridium difficile QCD-37x79]
 gi|306520455|ref|ZP_07406802.1| putative radical SAM protein [Clostridium difficile QCD-32g58]
 gi|123363359|sp|Q187U6|MIAB_CLOD6 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|115251031|emb|CAJ68861.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           (tRNA-i(6)A37 methylthiotransferase) [Clostridium
           difficile]
          Length = 478

 Score =  434 bits (1117), Expect = e-119,   Method: Composition-based stats.
 Identities = 166/460 (36%), Positives = 271/460 (58%), Gaps = 14/460 (3%)

Query: 13  MVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHI 72
              +  ++    +  F +++GCQMN +DS ++  M    GY+    ++++DLI+ NTC +
Sbjct: 27  QNEEYFNRTGKRKLVFTQTFGCQMNEHDSEKLCSMLEEMGYQMSMMVEESDLIIYNTCAV 86

Query: 73  REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGP 130
           RE A  KVY  LG++++LK        D+ + V GC+ Q     EE+ ++   V+++ G 
Sbjct: 87  RENAELKVYGNLGQLKHLKGK----NPDMKIAVCGCMMQQPHVVEELRKKYKHVDLIFGT 142

Query: 131 QTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190
              Y+ P+LL  +    +++   + V+ +     I     NRK  + AF+ I  GC+ FC
Sbjct: 143 HNLYKFPQLLTESINSDKMLVDVWDVDGEV----IEGLRSNRKFELKAFVNIMYGCNNFC 198

Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDL 250
           T+C+VPYTRG E SR+   +++E ++L+ NG  EITLLGQNV++  GK L+    +FS+L
Sbjct: 199 TYCIVPYTRGRERSRTPEDIINEIKELVANGTKEITLLGQNVDS-YGKTLE-NPVSFSEL 256

Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
           L  +++I+G+ R+R+ TSHP+D+SD +I A  D D +  +LHLP+Q GS  +LK MNR +
Sbjct: 257 LRKVNDIEGIERVRFMTSHPKDISDEVIYAIRDCDKVCEFLHLPIQCGSSSLLKKMNRHY 316

Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370
           T   Y +II++ +   P IA S+D ++GFPGET++D   T+D+V+K+ Y  AF+F YS R
Sbjct: 317 TKEYYLEIIEKAKKEVPGIAFSTDLMIGFPGETEEDLLDTLDVVEKVRYDSAFTFIYSKR 376

Query: 371 LGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLV 429
            GTP + M  Q+ E++K +R   + + +       ND    +I+EVL+E   K    K  
Sbjct: 377 QGTPAAKMENQIPEDIKHDRFNRVLEAVNRISAEINDGYKDRIVEVLVEGRSKNNENKFA 436

Query: 430 GRSPWLQSVVLNSK-NHNIGDIIKVRITDVKISTLYGELV 468
           GR+   + V      +  IG ++ V+IT+ +  +L G LV
Sbjct: 437 GRTRQNKLVNFEGGNDDLIGKLVMVKITEPRTFSLNGILV 476


>gi|262202141|ref|YP_003273349.1| RNA modification enzyme, MiaB family [Gordonia bronchialis DSM
           43247]
 gi|262085488|gb|ACY21456.1| RNA modification enzyme, MiaB family [Gordonia bronchialis DSM
           43247]
          Length = 528

 Score =  434 bits (1117), Expect = e-119,   Method: Composition-based stats.
 Identities = 162/457 (35%), Positives = 249/457 (54%), Gaps = 21/457 (4%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           V + + V++YGCQMNV+DS R+  +    GY R    D ADL+V NTC IRE A  K+Y 
Sbjct: 28  VRRSYQVRTYGCQMNVHDSERIAGLLEDAGYVRAAEDDAADLVVFNTCAIRENADNKLYG 87

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            L  +  +K+ R      + + V GC+AQ + + +L+R+P V+VV G      LP LL+R
Sbjct: 88  NLSHLAPVKSRR----PGMQIAVGGCLAQKDKDTVLKRAPWVDVVFGTHNIGSLPALLDR 143

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           AR             ++F           R    + ++++  GC+  CTFC+VP  RG E
Sbjct: 144 ARHNDAAEVEILDALERF----PSTLPAKRDSAYSGWVSVSVGCNNTCTFCIVPSLRGKE 199

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT----FSDLLYSLSEIK 258
           + R    ++ E   L+D GV E+TLLGQNVNA+     D E       F+DLL +   I 
Sbjct: 200 VDRRPGDILAEVTALVDQGVLEVTLLGQNVNAYGMSFADPELPRDRGAFADLLRACGRID 259

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           GL R+R+T+ HP + +D +I A      + P LH+P+QSGSDR+L++M R +    +  I
Sbjct: 260 GLERVRFTSPHPAEFTDDVIDAMAQTPNVCPQLHMPLQSGSDRVLRAMRRSYRRTRFLGI 319

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           +D++R+  P  AI++D IVGFPGET++DF  T+D+V++  ++ AF+F+YSPR GTP + M
Sbjct: 320 LDKVRAAMPHAAITTDIIVGFPGETEEDFAETLDVVEQARFSSAFTFQYSPRPGTPAATM 379

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE----KHGKEKGKLVGRSPW 434
            +QV   V +ER   L        +S N++ VG  +E+L+     +     G+L GR+  
Sbjct: 380 PDQVPPEVVSERYQRLIALQERICLSENESLVGSAVELLVVDDDGRKSARTGRLTGRARD 439

Query: 435 LQSVVLNSKNH-----NIGDIIKVRITDVKISTLYGE 466
            + V     +        GD++   +T      L  +
Sbjct: 440 GRLVHFTVDDEGRTRIRPGDVVHTTVTAAAPHHLIAD 476


>gi|225850314|ref|YP_002730548.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Persephonella
           marina EX-H1]
 gi|225646637|gb|ACO04823.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Persephonella marina
           EX-H1]
          Length = 438

 Score =  434 bits (1117), Expect = e-119,   Method: Composition-based stats.
 Identities = 172/444 (38%), Positives = 276/444 (62%), Gaps = 11/444 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++++++++GCQMN+ DS +M  M  + GYE     +DAD+I++NTC +REK  +KV S L
Sbjct: 2   KKYYIRTFGCQMNINDSQKMAGMLKTLGYEPARDWEDADIILVNTCSVREKPDQKVLSAL 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           G  + +KN       D ++ V GC+AQ  G EIL+++P V++V G    + LP+LLE A 
Sbjct: 62  GEFKKIKNK----KPDAVIGVCGCLAQRAGYEILQKAPFVDMVFGTTNIHHLPKLLEEAL 117

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G + V+    ++     L        R+   TA++T+  GCDK CT+C+VPYTRG E S
Sbjct: 118 QGNKAVEILEDIDQNETELDKYP--TVRENRYTAYVTVMRGCDKKCTYCIVPYTRGKERS 175

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R + +++ E + LID+GV EI L+GQNV A+   G D     F DLLY++++++G+ R+R
Sbjct: 176 RRIGEILQEVQWLIDDGVKEIHLIGQNVTAY---GKDLGDVRFVDLLYAVADVEGVERIR 232

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +TT HPRD+ +  IKA  ++  +  +LHLP+Q+GSDRILK+M R +T  EY + I+ ++ 
Sbjct: 233 FTTGHPRDLDEETIKAMAEIPQICEHLHLPIQAGSDRILKAMERGYTQKEYLEKIELLKK 292

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             PDI++S+D IVGFPGET +D+  T+ ++ ++ Y Q F+FKYSPR GTP + M    D 
Sbjct: 293 YIPDISLSTDIIVGFPGETYEDYMETIKVLKEVEYDQVFAFKYSPRPGTPAAQMPMTEDP 352

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
              ++ L  L    +E     N    G+ +E  +    +++G+ VGR+   + V +  +N
Sbjct: 353 KTLSKWLNDLILMQKEITFKKNLQYEGKTVE--VLVEEEKEGRFVGRTRTNKLVHIEGRN 410

Query: 445 HNIGDIIKVRITDVKISTLYGELV 468
           + +G+I+ V++T V   +L GE +
Sbjct: 411 NLLGEIVDVKVTKVNRFSLEGEAI 434


>gi|332519830|ref|ZP_08396294.1| RNA modification enzyme, MiaB family [Lacinutrix algicola 5H-3-7-4]
 gi|332044389|gb|EGI80583.1| RNA modification enzyme, MiaB family [Lacinutrix algicola 5H-3-7-4]
          Length = 479

 Score =  434 bits (1117), Expect = e-119,   Method: Composition-based stats.
 Identities = 171/459 (37%), Positives = 254/459 (55%), Gaps = 22/459 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F++SYGC MN  DS  +  +   QGY   + ++DADL+++NTC IR+KA + V   L
Sbjct: 24  KKLFIESYGCAMNFSDSEIVASILDEQGYNTTSKLEDADLVLVNTCSIRDKAEQTVRKRL 83

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            +   +K    +    + V V GC+A+    + L    IV++VVGP  Y  LP LL    
Sbjct: 84  EKYNAVK----RTNPKMKVGVLGCMAERLKSKFLEEEKIVDLVVGPDAYKDLPNLLAEVE 139

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G   ++   S ++ +  +S V        GVTAF++I  GCD  CTFCVVP+TRG E S
Sbjct: 140 EGHDAINVVLSKDETYGDVSPVRLN---SNGVTAFVSITRGCDNMCTFCVVPFTRGRERS 196

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK-------------CTFSDLL 251
           R    +++E   L   G  EITLLGQNV+++   G   +K               FS LL
Sbjct: 197 RDPQSIIEEINDLWSKGYKEITLLGQNVDSYLWYGGGLKKDFSKASDIQKATAVDFSKLL 256

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
              +E +  +R+R++TS+P+DMS  +IK       +  ++HLPVQSGSDRILK+MNR HT
Sbjct: 257 QICAEAQPKMRIRFSTSNPQDMSLEVIKTMAKYKNICNHIHLPVQSGSDRILKAMNRLHT 316

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
             EY  +ID I+++ PD AIS D I GFP ET++D + T+ L++ + Y   + F YS R 
Sbjct: 317 RKEYFTLIDNIKTIIPDCAISQDMIAGFPTETEEDHQDTLSLMEYVKYNFGYMFTYSERP 376

Query: 372 GTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLV 429
           GT     + + + E VK+ RL  + +   +         +G+ +EVLIE+  K+ K +  
Sbjct: 377 GTLAERKLDDDIPEAVKSRRLKEIIELQLKHSELRTREHLGKTVEVLIERESKKSKEQWS 436

Query: 430 GRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           GR+      V    N+ IGD + V++TD   +TL GE V
Sbjct: 437 GRTEKNLVAVFPKGNYKIGDFVNVKVTDCTKATLIGEAV 475


>gi|119868239|ref|YP_938191.1| RNA modification protein [Mycobacterium sp. KMS]
 gi|229890568|sp|A1UEZ3|MIAB_MYCSK RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|119694328|gb|ABL91401.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Mycobacterium sp. KMS]
          Length = 529

 Score =  434 bits (1117), Expect = e-119,   Method: Composition-based stats.
 Identities = 170/492 (34%), Positives = 263/492 (53%), Gaps = 47/492 (9%)

Query: 13  MVSQIVDQCI-----VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVL 67
           M S +  Q       V + + V++YGCQMNV+DS R+  +    GY R     DAD++V 
Sbjct: 1   MTSTVTQQAANALPPVARTYQVRTYGCQMNVHDSERLAGLLEDAGYRRAADGADADVVVF 60

Query: 68  NTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVV 127
           NTC +RE A  K+Y  L  +   K S       + + V GC+AQ + + +LRR+P V+VV
Sbjct: 61  NTCAVRENADNKLYGNLSHLAPRKRSE----PQMQIAVGGCLAQKDRDAVLRRAPWVDVV 116

Query: 128 VGPQTYYRLPELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGC 186
            G      LP LLERAR  +   V+   ++++    L        R+     +++I  GC
Sbjct: 117 FGTHNIGSLPTLLERARHNRAAQVEIAEALQEFPSTLPAA-----RESAYAGWVSISVGC 171

Query: 187 DKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW----------- 235
           +  CTFC+VP  RG E+ R    V+ E + L+D GV E+TLLGQNVNA+           
Sbjct: 172 NNTCTFCIVPSLRGKEVDRRPGDVLAEIQTLVDQGVLEVTLLGQNVNAYGVSFAADERLR 231

Query: 236 ----RGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL 291
                 + +   +  F++LL +   I GL R+R+T+ HP + +D +I+A  +   + P L
Sbjct: 232 EDPRMWQSVPRNRGAFAELLRACGRIDGLERVRFTSPHPAEFTDDVIEAMAETPNVCPAL 291

Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351
           H+P+QSGSDRIL++M R + A +Y  IIDR+R+  PD AI++D IVGFPGET++DF+AT+
Sbjct: 292 HMPLQSGSDRILRAMRRSYRAEKYLGIIDRVRAAIPDAAITTDLIVGFPGETEEDFQATL 351

Query: 352 DLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVG 411
           D+V    ++ AF+F+YS R GTP ++M  Q+ + V +ER   L +      +  N A VG
Sbjct: 352 DVVAASRFSSAFTFQYSKRPGTPAADMPGQLPKAVVSERYQRLIELQERISLEENQAQVG 411

Query: 412 QIIEVLI-EKHGKEK---GKLVGRSPWLQSVVLNSKNH-------------NIGDIIKVR 454
           + +E+L+    G++     +L GR+   + V                      GD++   
Sbjct: 412 RTLELLVATGEGRKDAATARLSGRARDGRLVHFAPGAAADEPLARRAFDQVRPGDVVTTT 471

Query: 455 ITDVKISTLYGE 466
           +T      L  +
Sbjct: 472 VTGAAPHHLIAD 483


>gi|197117156|ref|YP_002137583.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Geobacter
           bemidjiensis Bem]
 gi|229890543|sp|B5EE49|MIAB_GEOBB RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|197086516|gb|ACH37787.1| tRNA (2-methylthio-N6-dimethylallyl-A37) methylthiotransferase
           [Geobacter bemidjiensis Bem]
          Length = 441

 Score =  434 bits (1117), Expect = e-119,   Method: Composition-based stats.
 Identities = 173/444 (38%), Positives = 264/444 (59%), Gaps = 9/444 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ +++++GCQMNV DS ++  +    GY++     DADL++LNTC IR  A ++VY  L
Sbjct: 5   KKLYLETFGCQMNVSDSEKIVTLMKGMGYQQTQDPVDADLVLLNTCSIRATAEQRVYGHL 64

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           G+ +++K    K    L++ V GCVAQ EGE++L+++P VN+V G    + L  ++  A 
Sbjct: 65  GKFKSIK----KTKPGLIIGVGGCVAQQEGEKLLKKAPFVNLVFGTHNLHLLQGMVAAAE 120

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            GKR   TD+  ++K   L         + GVT F+T+ +GCD FC +C+VP+ RG EIS
Sbjct: 121 EGKRSSQTDFLDDEKRFDLFP---HSEAEGGVTRFVTVMQGCDNFCAYCIVPHVRGREIS 177

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           RS ++VV+E R L D+GV E+TLLGQNVN+       GE   F DLL  ++++ G+ R+R
Sbjct: 178 RSAAKVVEEVRALADSGVTEVTLLGQNVNS-YCSKQPGEP-DFPDLLRLVAQVDGIERIR 235

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +TTSHP+DMS  LI+   DL  L P++HLP QSGSDR+L+ MNR +TA +Y   +  ++ 
Sbjct: 236 FTTSHPKDMSPRLIECFADLPKLAPHIHLPAQSGSDRVLERMNRGYTAQQYLAKVAALKE 295

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             P I  + D IVGFPGE +  F+ TM L++++ YA  FSF YS R GT  +   +    
Sbjct: 296 ACPAIQFTGDMIVGFPGEDEAAFQDTMALMEQVQYADLFSFIYSARPGTKAAEYADDATR 355

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
             K  RL  LQ   ++  ++ N +  G + +VL+E        L GR+   +  V+    
Sbjct: 356 AEKQGRLERLQAAQKKTTLARNRSLEGTVQKVLVEGLSSTGDSLFGRTGGNRGTVMAGDP 415

Query: 445 HNIGDIIKVRITDVKISTLYGELV 468
              G ++ V+I +   + L GE+V
Sbjct: 416 SLAGRVLDVKIVEGLQTLLKGEIV 439


>gi|325954192|ref|YP_004237852.1| (dimethylallyl)adenosine tRNA methylthiotransferase miaB [Weeksella
           virosa DSM 16922]
 gi|323436810|gb|ADX67274.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Weeksella
           virosa DSM 16922]
          Length = 482

 Score =  434 bits (1116), Expect = e-119,   Method: Composition-based stats.
 Identities = 163/461 (35%), Positives = 257/461 (55%), Gaps = 23/461 (4%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
             ++ F++SYGCQMN  DS  +  +   +GY+  N +++ADLI+LNTC IR+KA + V +
Sbjct: 25  ASKKLFLESYGCQMNFSDSEIVASILTEEGYQTTNQVNEADLILLNTCSIRDKAEQTVRN 84

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            L  +  +K    K+   L + V GC+A+    + L    +V++VVGP  Y  LP LL  
Sbjct: 85  RLNALNAIK----KQNPSLKIGVLGCMAERLKHKFLEEEHLVDIVVGPDAYRDLPNLLTE 140

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
              G+  ++   S E+ +  +S +  G     GVTAF+TI  GCD  CTFCVVP+TRG E
Sbjct: 141 VEDGRDAINVQLSKEETYAEISPIRLG---GNGVTAFVTITRGCDNMCTFCVVPFTRGRE 197

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK-------------CTFSD 249
            SR    ++ E ++L + G  E+TLLGQNV+++   G   +K               F+ 
Sbjct: 198 RSRDPHSILREIQELHEAGYKEVTLLGQNVDSYLWYGGGPKKDFKNATEIQKATAVDFAQ 257

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
           LL  ++     +R+R++TS+P+DM D +++       +  Y+HLPVQSGS  +L+ MNR+
Sbjct: 258 LLDMVAMQFPSIRIRFSTSNPQDMKDNVLETMAKHHNICKYIHLPVQSGSTTVLERMNRQ 317

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369
           HT  +Y ++ID+IR + PD A+S D I GF GET+++ + T+ L++ + Y   + F YS 
Sbjct: 318 HTREQYFELIDKIRKIIPDCALSHDMIAGFCGETEEEHQDTLSLMEYVKYDFGYMFAYSD 377

Query: 370 RLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGK 427
           R GTP    M + V    K  RL  +    ++       A VG+  EVLIE +  K++  
Sbjct: 378 RPGTPAHKKMADDVPAETKKRRLQEIISLQQQHSAERMKAYVGKTHEVLIEGNSKKDENY 437

Query: 428 LVGRSPWLQSVVLNS-KNHNIGDIIKVRITDVKISTLYGEL 467
             GR+     +V    +  ++GD ++V + D   +TL GE+
Sbjct: 438 WFGRNTQNAVIVFPKIEGTSVGDFVQVYVHDCTTATLLGEM 478


>gi|254696401|ref|ZP_05158229.1| hypothetical protein Babob28_01463 [Brucella abortus bv. 2 str.
           86/8/59]
          Length = 388

 Score =  434 bits (1116), Expect = e-119,   Method: Composition-based stats.
 Identities = 231/384 (60%), Positives = 296/384 (77%)

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            LGR+R ++++R  +G +L + VAGCVAQAEG+EILRR+P V++V+GPQTY+RLP  L R
Sbjct: 2   ALGRLRKMRDARAADGKELTIGVAGCVAQAEGQEILRRAPNVDLVIGPQTYHRLPNALAR 61

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            R G++VV+TDY++EDKFE L        RKRGV+AFLT+QEGCDKFCTFCVVPYTRG E
Sbjct: 62  VRGGEKVVETDYAIEDKFEHLPAPRREETRKRGVSAFLTVQEGCDKFCTFCVVPYTRGSE 121

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SRS+ Q+V EA +L D+GV E+TLLGQNVNAW G+G DG +    +LL+ L+ I G+ R
Sbjct: 122 VSRSVKQIVAEAERLADSGVRELTLLGQNVNAWHGEGEDGREWGLGELLFRLARIPGIAR 181

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LRYTTSHPRDM D LI AH DL  LMPYLHLPVQSGSDRILK+MNRRH A EY ++I+RI
Sbjct: 182 LRYTTSHPRDMDDSLIAAHRDLRQLMPYLHLPVQSGSDRILKAMNRRHKADEYLRLIERI 241

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+VRPD+A+S DFIVGFPGETD DF  TM LV  + YAQA+SFKYSPR GTPG+++ + V
Sbjct: 242 RNVRPDMALSGDFIVGFPGETDQDFEDTMQLVRDVNYAQAYSFKYSPRPGTPGADLDDHV 301

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
           +E VK ERL  LQ  L  QQ +F D+ +G+ ++VL+EK G+E G++VGRSPWL  V+++ 
Sbjct: 302 EEAVKDERLQRLQALLSAQQYAFQDSMIGRKMDVLLEKPGREAGQMVGRSPWLLPVIIDD 361

Query: 443 KNHNIGDIIKVRITDVKISTLYGE 466
               +GDII V+I     ++L  +
Sbjct: 362 NKDRVGDIIHVKIVSTGTNSLIAQ 385


>gi|258654111|ref|YP_003203267.1| RNA modification enzyme, MiaB family [Nakamurella multipartita DSM
           44233]
 gi|258557336|gb|ACV80278.1| RNA modification enzyme, MiaB family [Nakamurella multipartita DSM
           44233]
          Length = 508

 Score =  434 bits (1116), Expect = e-119,   Method: Composition-based stats.
 Identities = 168/471 (35%), Positives = 258/471 (54%), Gaps = 31/471 (6%)

Query: 17  IVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA 76
           + D     + + V+++GCQMNV+DS R+  +    GY   +  D AD++V NTC +RE A
Sbjct: 1   MTDSPARTRTYQVRTFGCQMNVHDSERLSGLLEGAGYRAADDGDPADVVVFNTCAVRENA 60

Query: 77  AEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL 136
             K+Y  LG + ++K  R      + + V GC+AQ +  EI+RR+P V+VV G      L
Sbjct: 61  DNKLYGNLGHLASVKAKR----PGMQIAVGGCLAQKDRGEIVRRAPWVDVVFGTHNVGSL 116

Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
           P LLERAR  ++         + F           R      +++I  GC+  CTFC+VP
Sbjct: 117 PTLLERARHYEQAQVEILDALEVF----PSSLPAKRDSHYAGWVSISVGCNNTCTFCIVP 172

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256
             RG E  R    V+ E + L+D+GV E+TLLGQNVN++  +   G++  F  LL +   
Sbjct: 173 SLRGKEADRRPGDVLAEVQMLVDDGVLEVTLLGQNVNSYGVQF--GDRQAFGKLLRACGA 230

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           I GL R+R+T+ HP+D +  +I+A      +   LH+P+QSGSDR+LK+M R + +  Y 
Sbjct: 231 IDGLERVRFTSPHPKDFTPDVIEAMAQTPNVCHQLHMPLQSGSDRVLKAMRRSYRSTRYL 290

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
            I+D +R+  PD AI++D IVGFPGETD+DF  T+D+V +  +A AF+F+YSPR GTP +
Sbjct: 291 AILDEVRAAMPDAAITTDIIVGFPGETDEDFEQTLDVVRRSRFAGAFTFQYSPRPGTPAA 350

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEK---GKLVGRS 432
            + +QV   V AER   L + + E  ++ N   VG+ +E+L+    G++    G+L GR+
Sbjct: 351 TLPDQVPPEVVAERFGRLTEIVTESALTENQRQVGRTVELLVSAGEGRKDNSSGRLTGRA 410

Query: 433 PWLQSVVL-----------------NSKNHNIGDIIKVRITDVKISTLYGE 466
              + V                    S +   GD++ V +T      L  +
Sbjct: 411 RDGRLVHFAPQPATATAAATAAAAGVSGSIRPGDVVTVTVTRAAPHHLVAD 461


>gi|93006871|ref|YP_581308.1| tRNA-i(6)A37 modification enzyme MiaB [Psychrobacter cryohalolentis
           K5]
 gi|123386578|sp|Q1Q929|MIAB_PSYCK RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|92394549|gb|ABE75824.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Psychrobacter
           cryohalolentis K5]
          Length = 497

 Score =  434 bits (1116), Expect = e-119,   Method: Composition-based stats.
 Identities = 197/468 (42%), Positives = 288/468 (61%), Gaps = 24/468 (5%)

Query: 15  SQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIR 73
           +Q   +    ++ FV + GCQMNVYDS +M D+   S G E  +++D+AD++++NTC IR
Sbjct: 34  AQAPVEKAATKKVFVTTQGCQMNVYDSGKMLDVLGDSHGMEVTHNIDEADVLLMNTCSIR 93

Query: 74  EKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTY 133
           EKA EKV+S LGR R LK  R     DL++ V GCVA  EG+ I +R+P V++V GPQT 
Sbjct: 94  EKAQEKVFSELGRWRKLKEKR----PDLVIGVGGCVASQEGDNIQKRAPYVDMVFGPQTL 149

Query: 134 YRLPELLERARFGKRV--------VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEG 185
           +RLPEL +++   + +        VD  +   +KF+ L        R  G  AF++I EG
Sbjct: 150 HRLPELYDQSHQQREIAPKNRIGTVDVSFPSIEKFDFLP-----EPRVEGFKAFVSIMEG 204

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C K+C+FCVVPYTRG E+SR L  V+ E   L   GV EI LLGQNVN +RG+  DG  C
Sbjct: 205 CSKYCSFCVVPYTRGEELSRPLDDVLAEIDSLAAQGVREINLLGQNVNGYRGEKDDGSIC 264

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
            F++LL+ +S + G+ R+RYTTSHP + +D +I A+  L  L+ +LHLPVQSGS+ IL +
Sbjct: 265 RFAELLHYVSHVDGVERIRYTTSHPLEFTDDIIDAYAQLPELVSHLHLPVQSGSNAILAA 324

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           M R HT   Y   I++++++RPDI +SSDFI+GFPGETD DF+ T++L  ++ +  ++SF
Sbjct: 325 MKRNHTIDVYINQINKLKAIRPDIHLSSDFIIGFPGETDQDFQDTLNLAKELNFDHSYSF 384

Query: 366 KYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKH-GKE 424
            YS R GTP + + + V    K ERL   QK + +  ++     VG    VL+E+   + 
Sbjct: 385 IYSKRPGTPAAELPDDVSFKTKKERLAEFQKVIIDSTLAKTHEMVGTTTRVLVEQVANRH 444

Query: 425 KGKLVGRSPWLQSVVLNSK----NHNIGDIIKVRITD-VKISTLYGEL 467
              L+G +   ++V+        +  +G I+ VRITD V    + GE+
Sbjct: 445 PDCLIGTADNTRTVMFPYDVDKMDEMLGKIVSVRITDFVSPHMVKGEI 492


>gi|323343556|ref|ZP_08083783.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella oralis ATCC
           33269]
 gi|323095375|gb|EFZ37949.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella oralis ATCC
           33269]
          Length = 434

 Score =  434 bits (1116), Expect = e-119,   Method: Composition-based stats.
 Identities = 157/446 (35%), Positives = 257/446 (57%), Gaps = 15/446 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ ++++YGCQMNV DS  +  +    GY+  ++  +AD + LNTC +RE A  K+Y+ L
Sbjct: 2   KKLYIETYGCQMNVADSEVVASVMKMAGYDVCDTESEADAVFLNTCSVRENAENKIYNRL 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             +    ++  K+G +L++ V GC+A+   ++++      ++V GP +Y  LP+++ +A 
Sbjct: 62  DAL----HAERKKGRELILGVLGCMAERVKDDLIENH-HADLVAGPDSYLNLPDMIAQAE 116

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G + +D + S  + ++ +        +  G   F++I  GCD FC +C+VPYTRG E S
Sbjct: 117 TGNKAIDIELSKTETYKDVVPQRVILGKIGG---FVSIMRGCDNFCHYCIVPYTRGRERS 173

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R +  ++ E   L D    E+TLLGQNVN++R   +      F  LL  ++E+   +R+R
Sbjct: 174 RDIESILREVIDLRDKHYKEVTLLGQNVNSYRFGDI-----GFPQLLRRVAEVVPDMRVR 228

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +TTSHP+DMSD  +    D+  +  ++HLPVQSGS+++LK MNR++T   Y   +  IR 
Sbjct: 229 FTTSHPKDMSDETLHVIADMPNVCKHIHLPVQSGSNKVLKLMNRKYTREWYMDRVQAIRR 288

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN-MLEQVD 383
           + PD  +S+D  VG+ GET++D R ++ L+ ++GY  AF FKYS R GT  S  + + V 
Sbjct: 289 IVPDCGLSTDIFVGYHGETEEDHRQSLSLMKEVGYDSAFMFKYSERPGTYASKHLPDNVS 348

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNS 442
           E  K  RL  L     E     N    G+  +VL+E   K    +L GR+   + VV + 
Sbjct: 349 EEEKVRRLNELIHLQTELSAVSNKRDEGKEFDVLVEGFSKRSRSQLCGRTEQNKMVVFDK 408

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
            N +IG+ ++V+IT    +TL+GE V
Sbjct: 409 GNRHIGETVRVKITGSTSATLFGEEV 434


>gi|288800434|ref|ZP_06405892.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella sp. oral taxon
           299 str. F0039]
 gi|288332647|gb|EFC71127.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella sp. oral taxon
           299 str. F0039]
          Length = 441

 Score =  434 bits (1116), Expect = e-119,   Method: Composition-based stats.
 Identities = 158/447 (35%), Positives = 261/447 (58%), Gaps = 11/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F+++YGCQMNV DS  +  +    GYE  ++  +AD I +NTC +RE A  K+Y+ L
Sbjct: 2   KKLFIETYGCQMNVADSEVVASVMQMAGYEMCDNEAEADAIFMNTCSVRENAENKIYNRL 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             +    ++  K+G  L++ V GC+A+   ++++      ++V GP +Y  LP+++ +A 
Sbjct: 62  DTL----HAEQKKGRKLILGVLGCMAERVKDDLINNH-HADLVAGPDSYLNLPDMIAQAE 116

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G + +D + S  + ++ +       ++  G   F++I  GCD FC +C+VPYTRG E S
Sbjct: 117 TGSKAIDIELSKTETYKDIVPQRIALSKIGG---FVSIMRGCDNFCHYCIVPYTRGRERS 173

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG-LDGEKCTFSDLLYSLSEIKGLVRL 263
           R +  V+ E R L   G  E+TLLGQNVN++  +  + GE  +F DLL  ++     +R+
Sbjct: 174 RDVESVLAEVRDLCKQGYREVTLLGQNVNSYSFENEVTGEVTSFPDLLRLVAREVPTMRI 233

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R++TSHP+DMSD  ++   +   +  ++HLPVQSGSD++LK MNR++T   Y   +  I+
Sbjct: 234 RFSTSHPKDMSDDTLRVIAEEPNVCKHIHLPVQSGSDKVLKLMNRKYTVAWYLDRVKAIK 293

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN-MLEQV 382
            + PD  IS+D  VG+ GE ++D + +++L+  +GY  +F FKYS R GT  S  + + +
Sbjct: 294 EIIPDCGISTDIFVGYHGEEEEDHQMSLELMKTVGYDSSFMFKYSERPGTYASKHLPDNI 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441
            E VK  RL  + +   +     N    G++ EVL+E   K    +L GR+   + VV +
Sbjct: 354 SEEVKLRRLNEMIQLQTQLSAISNKKDEGKVFEVLVEGPSKRSREQLCGRTEQNKMVVFD 413

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
             NH+IG+ + V+IT    +TL GE V
Sbjct: 414 KGNHHIGERVMVKITSSTSATLLGEAV 440


>gi|163839482|ref|YP_001623887.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Renibacterium
           salmoninarum ATCC 33209]
 gi|229890623|sp|A9WQ47|MIAB_RENSM RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|162952958|gb|ABY22473.1| tRNA 2-methylthioadenosine synthase [Renibacterium salmoninarum
           ATCC 33209]
          Length = 515

 Score =  434 bits (1116), Expect = e-119,   Method: Composition-based stats.
 Identities = 166/476 (34%), Positives = 263/476 (55%), Gaps = 23/476 (4%)

Query: 1   MGLFIKLIGVAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD 60
           M L +     AH      D+ + P+ + V++YGCQMNV+DS RM  +    G  +     
Sbjct: 1   MTLTVSPQESAHQQ----DESVTPRTYEVRTYGCQMNVHDSERMAGLLERSGLVKAE-GK 55

Query: 61  DADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRR 120
            AD++V NTC +RE A  K+Y  LG +   K +       + + V GC+AQ + + IL+R
Sbjct: 56  VADVVVFNTCAVRENADNKLYGNLGMLAPAKEA----NPGMQIAVGGCLAQKDRDTILKR 111

Query: 121 SPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFL 180
           +P V+VV G      LP LLERAR  +          D F           R    + ++
Sbjct: 112 APWVDVVFGTHNVGALPTLLERARHNEEAQLEILESLDVFPSTLPT----KRDAVYSGWV 167

Query: 181 TIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL 240
           +I  GC+  CTFC+VP  RG E  R    ++ E + L+++G  E+TLLGQNVN++  +  
Sbjct: 168 SISVGCNNTCTFCIVPSLRGKEKDRRPGDILAEIQALVEDGAIEVTLLGQNVNSYGVEF- 226

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300
            G++  FS LL +  EI+GL R+R+T+ HP   ++ +I+A  +   +MP LH+P+QSGSD
Sbjct: 227 -GDRQAFSKLLRACGEIEGLERVRFTSPHPAAFTEDVIEAMAETHNVMPQLHMPLQSGSD 285

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
           ++LK M R + + ++  I+D++R+  PD AIS+D IVGFPGET++DF+AT+D+V K  +A
Sbjct: 286 KVLKDMRRSYRSSKFLGILDKVRTQIPDAAISTDIIVGFPGETEEDFQATLDVVAKSRFA 345

Query: 361 QAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE- 419
            AF+F+YS R GTP +++ +Q+ + V  ER   L     +     N   +G+ +E+++  
Sbjct: 346 TAFTFQYSKRPGTPAADLPDQLPKAVVQERFERLTALQDQISAEENARQIGREVELMVTA 405

Query: 420 ---KHGKEKGKLVGRSPWLQSVVLN----SKNHNIGDIIKVRITDVKISTLYGELV 468
              K   E  +L GR+   + V        +    GD++ V IT+     L  + +
Sbjct: 406 GSGKKAAETQRLSGRAKDSRLVHFAVPEGEETPRPGDLVTVTITEAASFHLVADPL 461


>gi|291522245|emb|CBK80538.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Coprococcus catus GD/7]
          Length = 481

 Score =  434 bits (1116), Expect = e-119,   Method: Composition-based stats.
 Identities = 164/452 (36%), Positives = 253/452 (55%), Gaps = 16/452 (3%)

Query: 20  QCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEK 79
           +    + + V ++GCQMN  DS ++  +    GY   ++ +DAD ++ NTC +RE A  +
Sbjct: 40  RTGKKKTYHVVTFGCQMNARDSEKLAGILERIGYAETDT-EDADFVIYNTCTVRENANLR 98

Query: 80  VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAE--GEEILRRSPIVNVVVGPQTYYRLP 137
           VY  LG+++  K        D+L+ + GC+ Q     ++I +    V+++ G    ++L 
Sbjct: 99  VYGRLGQMKRTKQRH----PDMLIALCGCMMQEPLVVDKIRKSYRHVDIIFGTHNIFKLA 154

Query: 138 ELLE-RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
           EL++ R   GK VVD         E L        RK      + I  GC+ FC++C+VP
Sbjct: 155 ELIQTRLNTGKMVVDIWKDTNQIVEDLP-----NERKYSFKTGVNIMFGCNNFCSYCIVP 209

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256
           Y RG E SR    ++ E  + + +GV E+ LLGQNVN+  GK L+    +F+ LL  + +
Sbjct: 210 YVRGRERSREPKDIIREIERDVADGVKEVMLLGQNVNS-YGKNLE-NPISFAKLLQEIEK 267

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           I+GL R+R+ TSHP+D+SD LI   G    +  +LHLP+QSGS RILK MNR++T   Y 
Sbjct: 268 IEGLERIRFMTSHPKDLSDELIAVMGQSKKICRHLHLPLQSGSSRILKLMNRKYTKESYL 327

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
            ++DRIR   PDI++++D IVGFPGET++DF  TMD+V+K+G+  AF+F YS R GTP +
Sbjct: 328 DLVDRIRKGCPDISLTTDIIVGFPGETEEDFLETMDVVEKVGFDSAFTFIYSKRTGTPAA 387

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GRSPWL 435
           +M  QV E+V  +R   L K ++++    +    G + +VL+E   +    +V GR    
Sbjct: 388 SMENQVPEDVVKDRFDRLLKLVQQKASEASARFTGSVQKVLVEDVNEHDETMVTGRMSNN 447

Query: 436 QSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
             V        IG I+ V + + K     G L
Sbjct: 448 LLVHFKGTPDLIGQIVDVHLEECKGFYYIGNL 479


>gi|298206730|ref|YP_003714909.1| putative SAM/TRAM family methylase protein [Croceibacter atlanticus
           HTCC2559]
 gi|83849361|gb|EAP87229.1| putative SAM/TRAM family methylase protein [Croceibacter atlanticus
           HTCC2559]
          Length = 482

 Score =  434 bits (1116), Expect = e-119,   Method: Composition-based stats.
 Identities = 167/460 (36%), Positives = 258/460 (56%), Gaps = 21/460 (4%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
            ++ F++SYGC MN  DS  +  +   +G+    +++DADL+++NTC IR+KA + V   
Sbjct: 23  KRKLFIESYGCAMNFSDSEIVASIMAKEGFNTTPNLEDADLVLVNTCSIRDKAEQTVRKR 82

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           L +   +K        ++ V V GC+A+    + L    IV++VVGP  Y  LP L++  
Sbjct: 83  LEKYNAVKRDH---NPNMKVGVLGCMAERLKSKFLEEEKIVDLVVGPDAYKDLPNLIKEV 139

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             G+  V+   S ++ +  +S V        GV+AF++I  GCD  CTFCVVP+TRG E 
Sbjct: 140 EEGRDAVNVILSKDETYGDVSPVRLQ---TNGVSAFVSITRGCDNMCTFCVVPFTRGRER 196

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK-------------CTFSDL 250
           SR    ++DE R L +NG  EITLLGQNV+++   G   +K               F  L
Sbjct: 197 SRDPQSILDEVRNLSENGYKEITLLGQNVDSYLWYGGGMKKDFSKATPMQQATATGFPQL 256

Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
           L  ++E    +R+R++TS+P+DM++ +IK       +  ++HLPVQSGSDRILK MNR H
Sbjct: 257 LKMVAETFPNMRIRFSTSNPQDMTEDVIKTMAAYSNICKHIHLPVQSGSDRILKEMNRLH 316

Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370
           T  EY  +ID IR+  PD +IS D I+GFP ET+ D + T+ L++K+ Y   + +KYS R
Sbjct: 317 TREEYFSLIDTIRAYMPDCSISQDMIIGFPTETEQDHKDTLSLMEKVQYNFGYMYKYSER 376

Query: 371 LGTPG-SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KL 428
            GT     M + V E VK  RL  +    R+      +  +G+ +EVL+E+  K+   + 
Sbjct: 377 PGTMAGRKMEDDVPEEVKKRRLSEVVALQRQLSQLQTEKNIGKTVEVLVERESKKSDKEW 436

Query: 429 VGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            GR+      V   +++ +GD++ V+I D   +TL G  +
Sbjct: 437 SGRTSQNAVAVFPKEHYKVGDLVNVKIHDCTSATLIGNAI 476


>gi|292669800|ref|ZP_06603226.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Selenomonas noxia ATCC
           43541]
 gi|292648597|gb|EFF66569.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Selenomonas noxia ATCC
           43541]
          Length = 444

 Score =  433 bits (1115), Expect = e-119,   Method: Composition-based stats.
 Identities = 162/445 (36%), Positives = 259/445 (58%), Gaps = 14/445 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R+ +  YGCQMN+ D+ RME    + GY R     +AD+I++NTC +RE A +KVY  +G
Sbjct: 11  RYKILVYGCQMNIADAERMEGQLQAAGYARTEETANADIILINTCCVRETAEDKVYGKIG 70

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            ++ +K         L+  +AGC+AQ EG+ ++RR+P ++ V+G      L  ++   R 
Sbjct: 71  EVKKIKEK----NPKLIFGIAGCMAQKEGDNLMRRAPHIDFVLGTGKVQELTRIIAEIRA 126

Query: 146 GKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
               VVD   S  +  E L +  GG       +A++ I  GC+ +CT+C+VPY RG E S
Sbjct: 127 EHSPVVDVALSDSEIAEDLPVARGGK-----FSAWVPIMYGCNNYCTYCIVPYVRGRERS 181

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R+  +VV E R+ +  G  E+TLLGQNVN++   G D ++  F+DLL  + E++G+ R+R
Sbjct: 182 RAPEEVVAEVRRAVAEGYREVTLLGQNVNSY---GKDHKEADFADLLRMVDEVEGIRRVR 238

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           + TSHP+D+SD LI        +  ++HLPVQ GS R+LK+MNR +T  +YR+   R+R 
Sbjct: 239 FMTSHPKDISDKLIDTIKSGAHICEHIHLPVQYGSSRLLKAMNRGYTVEKYRERALRVRE 298

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             P+ ++++D IVGFPGET++DF   +  + ++ Y  A++F YS R GTP + M  QV +
Sbjct: 299 ALPEASLTTDLIVGFPGETEEDFAQMLAFLREMRYDSAYTFLYSKRSGTPAATMANQVAD 358

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVLNSK 443
           +VK  RL  L ++      + N+  +G  +E+++E   K   +   GR+   + V+    
Sbjct: 359 DVKHARLNRLMEEQNAISRAINERLMGAELEIMVEGASKNDPRVWSGRTRTNKIVLFPHG 418

Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468
               GD ++V+I   +   L GE+V
Sbjct: 419 AEREGDFVRVKINQPQTWLLKGEVV 443


>gi|260438409|ref|ZP_05792225.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Butyrivibrio crossotus
           DSM 2876]
 gi|292808995|gb|EFF68200.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Butyrivibrio crossotus
           DSM 2876]
          Length = 473

 Score =  433 bits (1115), Expect = e-119,   Method: Composition-based stats.
 Identities = 155/447 (34%), Positives = 253/447 (56%), Gaps = 16/447 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
            + ++++GCQMN  DS ++  +  + G+   ++ ++AD ++ NTC +RE A  ++Y  LG
Sbjct: 39  TYHIQTFGCQMNARDSEKLAGILEAAGFVHTDN-EEADFVIYNTCSVRENANNRLYGHLG 97

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGE--EILRRSPIVNVVVGPQTYYRLPELLERA 143
           R++ +K    K   D+L+ + GC+ Q   E  +I  +   +++V G    ++  EL+   
Sbjct: 98  RMKVVK----KNNPDMLIAICGCMMQEPDEIEKIKTKYKFIDIVFGTHNIFKFAELVHTK 153

Query: 144 RFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
              +  ++D         E L  V     RK    + + I  GC+ FC++C+VPY RG E
Sbjct: 154 LNSEGMIIDIWKDTNQIVEDLPDV-----RKYTFKSGVNIMYGCNNFCSYCIVPYVRGRE 208

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR    ++ E  + +  GV E+ LLGQNVN+  GK L+    +F++LL  +S+++GL R
Sbjct: 209 RSREPKDIIREVERFVKEGVKEVMLLGQNVNS-YGKTLE-NPISFAELLKEVSKVEGLER 266

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+ T HP+D+SD LI+       +  ++HLP+QSGS RILK MNR +T   Y +++ +I
Sbjct: 267 IRFMTPHPKDLSDELIETMAVTPKVCHHIHLPLQSGSSRILKLMNRHYTKESYLELVKKI 326

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R   PD A+++D IVGFPGET++DF  TMD+V +  +  A++F YS R GTP ++M EQ+
Sbjct: 327 RKRMPDAALTTDIIVGFPGETEEDFNDTMDVVREAEFDSAYTFIYSKREGTPAASMTEQI 386

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRSPWLQSVVLN 441
            E V  ER   L K++ E         VG+ ++VL+E+  +  +G L GR      V   
Sbjct: 387 PEEVTKERFDRLLKQVGESSKKRCGLDVGKTLKVLVEEVNQNHEGLLTGRLENNTLVHFK 446

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
             +  +G I  V++ + K     GELV
Sbjct: 447 GNSSLVGTICDVKLNESKGFYYIGELV 473


>gi|57238993|ref|YP_180129.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Ehrlichia
           ruminantium str. Welgevonden]
 gi|81637928|sp|Q5HBR5|MIAB_EHRRW RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|57161072|emb|CAH57979.1| conserved hypothetical protein [Ehrlichia ruminantium str.
           Welgevonden]
          Length = 445

 Score =  433 bits (1115), Expect = e-119,   Method: Composition-based stats.
 Identities = 213/442 (48%), Positives = 314/442 (71%), Gaps = 11/442 (2%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
            ++KSYGCQMNVYDSL +E++    G+  VN   +AD+++LNTCHIREKAAEK+YS LGR
Sbjct: 4   LYIKSYGCQMNVYDSLIIENIIKPLGFSIVNEPSEADIVILNTCHIREKAAEKLYSELGR 63

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF- 145
           IR ++ +      +L +VVAGCVAQAEG EI  R+P V++VVGPQ+ + LPEL+ +AR  
Sbjct: 64  IRKIQET-----KNLTIVVAGCVAQAEGTEIFTRAPFVDIVVGPQSIHTLPELIVKARKI 118

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            K++++ D+ V  KF+ +++ +   N+K  V+AF+++QEGC+KFC+FCVVPYTRG E SR
Sbjct: 119 KKQIINIDFPVISKFDAIAVEEYTKNQK--VSAFISVQEGCNKFCSFCVVPYTRGEEYSR 176

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           ++  +  EA  L D+G+ EITL+GQNVNA+ G    G +     L+  +++I  + R+ Y
Sbjct: 177 TVEAIFKEALILADSGIKEITLIGQNVNAYHG-TYKGNEWDLGRLIQHIAKISSIERIYY 235

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
           TTSHPRDM + L +AHG    L+P++HLPVQSGS++IL+ MNR+HTA EY  II  +R  
Sbjct: 236 TTSHPRDMHESLYEAHGIEKKLIPFIHLPVQSGSNKILRKMNRKHTAEEYINIIKTLRKH 295

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
           R DIA SSDFIVGFPGETD+DF  T+ L++++ ++QA+SFKYSPR GTP +    Q+ + 
Sbjct: 296 RSDIAYSSDFIVGFPGETDEDFENTIQLIEEVKFSQAYSFKYSPRPGTPSAEYTSQIPDE 355

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445
           +K++RL  LQ+ + +QQ+ FN   +G+   VL  K GK   +++G++P++QS  +N++N 
Sbjct: 356 IKSQRLTKLQELVHKQQLEFNKKMIGETHPVLFYKKGKFDNQIIGKTPYMQSCYINTENP 415

Query: 446 NI--GDIIKVRITDVKISTLYG 465
           ++    I+ ++ITD   + L G
Sbjct: 416 DLYYNKIVPIKITDAHKNHLTG 437


>gi|108799124|ref|YP_639321.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Mycobacterium
           sp. MCS]
 gi|123178924|sp|Q1BA19|MIAB_MYCSS RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|108769543|gb|ABG08265.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Mycobacterium sp. MCS]
          Length = 525

 Score =  433 bits (1115), Expect = e-119,   Method: Composition-based stats.
 Identities = 169/488 (34%), Positives = 262/488 (53%), Gaps = 43/488 (8%)

Query: 13  MVSQIVDQ-CIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCH 71
           M  Q  +    V + + V++YGCQMNV+DS R+  +    GY R     DAD++V NTC 
Sbjct: 1   MTQQAANALPPVARTYQVRTYGCQMNVHDSERLAGLLEDAGYRRAADGADADVVVFNTCA 60

Query: 72  IREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ 131
           +RE A  K+Y  L  +   K S       + + V GC+AQ + + +LRR+P V+VV G  
Sbjct: 61  VRENADNKLYGNLSHLAPRKRSE----PQMQIAVGGCLAQKDRDAVLRRAPWVDVVFGTH 116

Query: 132 TYYRLPELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190
               LP LLERAR  +   V+   ++++    L        R+     +++I  GC+  C
Sbjct: 117 NIGSLPTLLERARHNRAAQVEIAEALQEFPSTLPAA-----RESAYAGWVSISVGCNNTC 171

Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW--------------- 235
           TFC+VP  RG E+ R    V+ E + L+D GV E+TLLGQNVNA+               
Sbjct: 172 TFCIVPSLRGKEVDRRPGDVLAEIQTLVDQGVLEVTLLGQNVNAYGVSFAADERLREDPR 231

Query: 236 RGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPV 295
             + +   +  F++LL +   I GL R+R+T+ HP + +D +I+A  +   + P LH+P+
Sbjct: 232 MWQSVPRNRGAFAELLRACGRIDGLERVRFTSPHPAEFTDDVIEAMAETPNVCPALHMPL 291

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
           QSGSDRIL++M R + A +Y  IIDR+R+  PD AI++D IVGFPGET++DF+AT+D+V 
Sbjct: 292 QSGSDRILRAMRRSYRAEKYLGIIDRVRAAIPDAAITTDLIVGFPGETEEDFQATLDVVA 351

Query: 356 KIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIE 415
              ++ AF+F+YS R GTP ++M  Q+ + V +ER   L +      +  N A VG+ +E
Sbjct: 352 ASRFSSAFTFQYSKRPGTPAADMPGQLPKAVVSERYQRLIELQERISLEENQAQVGRTLE 411

Query: 416 VLI-EKHGKEK---GKLVGRSPWLQSVVLNSKNH-------------NIGDIIKVRITDV 458
           +L+    G++     +L GR+   + V                      GD++   +T  
Sbjct: 412 LLVATGEGRKDAATARLSGRARDGRLVHFAPGAAADEPLARRAFDQVRPGDVVTTTVTGA 471

Query: 459 KISTLYGE 466
               L  +
Sbjct: 472 APHHLIAD 479


>gi|91202951|emb|CAJ72590.1| conserved hypothetical protein [Candidatus Kuenenia
           stuttgartiensis]
          Length = 447

 Score =  433 bits (1115), Expect = e-119,   Method: Composition-based stats.
 Identities = 173/444 (38%), Positives = 264/444 (59%), Gaps = 11/444 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +  F +++GCQMN  D+     +    GY  V+ +++AD+I+ NTC +R+ A +KVYS L
Sbjct: 14  KTVFFETFGCQMNKLDAELSLGLLQEDGYSIVDKVEEADVILYNTCSVRQHAEDKVYSHL 73

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           G +R LK    K+  D+++ V GC+AQ + + I +R P V++V G + + RLPELL + R
Sbjct: 74  GALRTLK----KKHPDVIIGVLGCMAQKDAQSIFKRMPHVDLVCGTRMFTRLPELLLKIR 129

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
                V       D+ E + +      R     AF+T+  GCD +C++C+VPY RG E+S
Sbjct: 130 NHGNHVLAV----DEDEIVDVKRIAAYRPNVYQAFVTVMRGCDNYCSYCIVPYVRGREVS 185

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R+++ V  E  +L+ NG  EITLLGQN+N+  GK L G   T  DLL  L+ I+ L RLR
Sbjct: 186 RTIADVEREVLELVSNGCREITLLGQNINS-YGKSLPGN-ITLGDLLIELNGIEKLERLR 243

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           + TSHP+DMS  LI+    LD    YLH+P QSGSDRILK M+R +TA  YR++I   R 
Sbjct: 244 FVTSHPKDMSRDLIRTMSQLDKACEYLHMPAQSGSDRILKKMHRGYTAGYYRELIQYARD 303

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           + P I ++ DFIVGFPGET++DF+ T+ L++ I +  +F FKYS R GT  + + + V +
Sbjct: 304 LMPTIKVAGDFIVGFPGETEEDFQETVCLMEDIRFQNSFIFKYSTRTGTKAAELTDDVPD 363

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVLNSK 443
            +K +R   L    ++  +  N   +G+ ++VL+E   K +  KL GR+     VV   +
Sbjct: 364 EIKKKRNTTLLDLQKKISLEENKKLIGRKLQVLVEGASKSDPNKLSGRTRQNNIVVFKGQ 423

Query: 444 NHNIGDIIKVRITDVKISTLYGEL 467
              +G ++ + I +    TL+G +
Sbjct: 424 PALVGTLVDITINEATDLTLFGTI 447


>gi|58578929|ref|YP_197141.1| hypothetical protein ERWE_CDS_02650 [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58417555|emb|CAI26759.1| Conserved hypothetical protein [Ehrlichia ruminantium str.
           Welgevonden]
          Length = 450

 Score =  433 bits (1114), Expect = e-119,   Method: Composition-based stats.
 Identities = 213/442 (48%), Positives = 314/442 (71%), Gaps = 11/442 (2%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
            ++KSYGCQMNVYDSL +E++    G+  VN   +AD+++LNTCHIREKAAEK+YS LGR
Sbjct: 9   LYIKSYGCQMNVYDSLIIENIIKPLGFSIVNEPSEADIVILNTCHIREKAAEKLYSELGR 68

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF- 145
           IR ++ +      +L +VVAGCVAQAEG EI  R+P V++VVGPQ+ + LPEL+ +AR  
Sbjct: 69  IRKIQET-----KNLTIVVAGCVAQAEGTEIFTRAPFVDIVVGPQSIHTLPELIVKARKI 123

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            K++++ D+ V  KF+ +++ +   N+K  V+AF+++QEGC+KFC+FCVVPYTRG E SR
Sbjct: 124 KKQIINIDFPVISKFDAIAVEEYTKNQK--VSAFISVQEGCNKFCSFCVVPYTRGEEYSR 181

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           ++  +  EA  L D+G+ EITL+GQNVNA+ G    G +     L+  +++I  + R+ Y
Sbjct: 182 TVEAIFKEALILADSGIKEITLIGQNVNAYHG-TYKGNEWDLGRLIQHIAKISSIERIYY 240

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
           TTSHPRDM + L +AHG    L+P++HLPVQSGS++IL+ MNR+HTA EY  II  +R  
Sbjct: 241 TTSHPRDMHESLYEAHGIEKKLIPFIHLPVQSGSNKILRKMNRKHTAEEYINIIKTLRKH 300

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
           R DIA SSDFIVGFPGETD+DF  T+ L++++ ++QA+SFKYSPR GTP +    Q+ + 
Sbjct: 301 RSDIAYSSDFIVGFPGETDEDFENTIQLIEEVKFSQAYSFKYSPRPGTPSAEYTSQIPDE 360

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445
           +K++RL  LQ+ + +QQ+ FN   +G+   VL  K GK   +++G++P++QS  +N++N 
Sbjct: 361 IKSQRLTKLQELVHKQQLEFNKKMIGETHPVLFYKKGKFDNQIIGKTPYMQSCYINTENP 420

Query: 446 NI--GDIIKVRITDVKISTLYG 465
           ++    I+ ++ITD   + L G
Sbjct: 421 DLYYNKIVPIKITDAHKNHLTG 442


>gi|332970480|gb|EGK09470.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Psychrobacter sp.
           1501(2011)]
          Length = 528

 Score =  433 bits (1114), Expect = e-119,   Method: Composition-based stats.
 Identities = 190/460 (41%), Positives = 287/460 (62%), Gaps = 24/460 (5%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
            ++ ++ + GCQMNVYDS +M ++   S      N++++AD++++NTC IREKA EKV+S
Sbjct: 74  KKKVYIATQGCQMNVYDSEKMGNVLGDSHDMIVTNNIEEADVLLMNTCSIREKAQEKVFS 133

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            LGR R LK     +  DL++ V GCVA  EG+ I +R+P V++V GPQT +RLPEL ++
Sbjct: 134 ELGRWRKLKE----DNPDLVIGVGGCVASQEGDNIQKRAPYVDMVFGPQTLHRLPELYDQ 189

Query: 143 ARFGKRV--------VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCV 194
           +   K V        VD  +   +KF+ L        +  G  AF++I EGC K+C+FCV
Sbjct: 190 STRQKDVKPKDRIGTVDVSFPSIEKFDFLP-----EPKVEGYRAFVSIMEGCSKYCSFCV 244

Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL 254
           VPYTRG E+SR L  V+ E   L + GV EITLLGQNVN +RG+  DG  C F++LL+ +
Sbjct: 245 VPYTRGEELSRPLDDVLAEIDSLAEQGVREITLLGQNVNGYRGQKDDGSICRFAELLHYV 304

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
           + + G+ R+RYTTSHP + +D +I+A+  L  L+ +LHLPVQSGS++IL +M R HT   
Sbjct: 305 AHVDGIERIRYTTSHPLEFTDDIIEAYEKLPQLVSHLHLPVQSGSNKILAAMKRNHTIDV 364

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
           Y   I ++ +VRPD+ +SSDFI+GFPGET++DF  T++L  ++ +  ++SF YS R GTP
Sbjct: 365 YINQIRKLMAVRPDMHLSSDFIIGFPGETEEDFLETLNLAKELDFDHSYSFIYSKRPGTP 424

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKH-GKEKGKLVGRSP 433
            + + + V    K ERL   QK + +  +      VG+ + V++E+   +   +L+G + 
Sbjct: 425 AAELPDDVSLATKKERLAIFQKVIVDSTLKKTQEMVGKTLRVMVEEIADRYPDQLLGTAD 484

Query: 434 WLQSVVLNS----KNHNIGDIIKVRITD-VKISTLYGELV 468
             +SV+  +    K   +G  + V+I D V    + GELV
Sbjct: 485 NTRSVLFTATEEQKKELMGKFVTVKINDYVSPHMVRGELV 524


>gi|309775695|ref|ZP_07670693.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Erysipelotrichaceae
           bacterium 3_1_53]
 gi|308916534|gb|EFP62276.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Erysipelotrichaceae
           bacterium 3_1_53]
          Length = 478

 Score =  433 bits (1114), Expect = e-119,   Method: Composition-based stats.
 Identities = 174/460 (37%), Positives = 257/460 (55%), Gaps = 19/460 (4%)

Query: 16  QIVDQCIV---PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHI 72
           Q+ +Q  +    +++++++YGCQ N  DS  +  +     +  V    DADLI++NTC I
Sbjct: 31  QMPEQIRMLGQGKKYYLRTYGCQANERDSETLAGILEEMNFTAVEHPQDADLILMNTCAI 90

Query: 73  REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGP 130
           R+ A +KV   +G ++ LK    +   DLL  + GC+AQ E     +L +   VN++ G 
Sbjct: 91  RKNAEDKVLGEIGSLKRLK----RNKPDLLFGLCGCMAQEEDVVATLLEKYRHVNLIFGT 146

Query: 131 QTYYRLPELLERAR-FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKF 189
              +RLPELL      GKR V+      D  E L +      R     A++ I  GCDKF
Sbjct: 147 HNIHRLPELLYDVMVHGKRSVEVLSKEGDVIENLPV-----RRFGRHKAWVNIMYGCDKF 201

Query: 190 CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSD 249
           CT+C+VPYTRG E SR +  +++E R L  +G  EITLLGQNVN+  GK L  E   F+ 
Sbjct: 202 CTYCIVPYTRGKERSRLMEDILEEVRVLKQDGFKEITLLGQNVNS-YGKDLHMEG-GFAK 259

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
           LL   ++  G+ R+R+TTSHP D SD +I      D +MP++HLPVQSG   ILK M RR
Sbjct: 260 LLEETAK-TGIERIRFTTSHPWDFSDEMIDVIARYDNIMPFIHLPVQSGDSDILKIMGRR 318

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369
           +T  +Y  +  +I+      AIS+D IVGFP ET++ F+ T+ LVD+  +  AF+F YSP
Sbjct: 319 YTREQYLTLFHKIKERVAGCAISTDIIVGFPNETEEQFQNTLSLVDECQFDNAFTFIYSP 378

Query: 370 RLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-L 428
           R GTP + M + +   VK  RL  L ++        N+A +G I++VL++   K+  +  
Sbjct: 379 REGTPAAAMEDNIPLAVKQRRLQELNERWNLYAHEKNEAYLGSIVKVLVDGASKKNKEVY 438

Query: 429 VGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            G +   + V     +   GDI+ V+IT  K  +L GE +
Sbjct: 439 SGYTETNKLVNFQRTDAKPGDIVSVKITACKTFSLDGEQI 478


>gi|119718067|ref|YP_925032.1| RNA modification protein [Nocardioides sp. JS614]
 gi|229890578|sp|A1SNG0|MIAB_NOCSJ RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|119538728|gb|ABL83345.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Nocardioides sp. JS614]
          Length = 496

 Score =  433 bits (1114), Expect = e-119,   Method: Composition-based stats.
 Identities = 163/457 (35%), Positives = 251/457 (54%), Gaps = 19/457 (4%)

Query: 18  VDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA 77
             Q   P+ + V++YGCQMNV+DS R+  +    GY        AD++V NTC +RE A 
Sbjct: 3   TAQHTSPRTYEVRTYGCQMNVHDSERLTGLLEDAGYVAAPDGQQADVVVFNTCAVRENAD 62

Query: 78  EKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLP 137
            K+Y  LG +  +K +       + + V GC+AQ + + I  R+P V+VV G      LP
Sbjct: 63  NKLYGNLGHLAPVKAAT----PGMQIAVGGCLAQKDRDTITTRAPWVDVVFGTHNIGSLP 118

Query: 138 ELLERAR-FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
            LLERAR   +  V+   S+E     L        R+    A++++  GC+  CTFC+VP
Sbjct: 119 ALLERARVQDEAQVEILESLEVFPSTLPT-----RRESAYAAWVSVSVGCNNTCTFCIVP 173

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256
             RG E  R   +++ E   L+ +GV EITLLGQNVNA+  +   G++  FS LL +  E
Sbjct: 174 SLRGKEKDRRPGEILAEVEALVADGVSEITLLGQNVNAYGVEF--GDRQAFSKLLRACGE 231

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           + GL R+R+T+ HP + +D +I A  +   +MP LH+P+QSGSD++L+ M R +   ++ 
Sbjct: 232 VDGLERVRFTSPHPAEFTDDVIAAMAETPNVMPQLHMPLQSGSDKVLRDMRRSYRQRKFL 291

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
            I++R+R+  PD AI++D IVGFPGET++DF  TM +V    ++ AF+F+YS R GTP +
Sbjct: 292 GILERVRAAMPDAAITTDIIVGFPGETEEDFLQTMHVVRAARFSGAFTFQYSKRPGTPAA 351

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKG---KLVGRS 432
            + +QV   V  +R   L   + E     N   VG+ +E+++ E  G++     +L GR 
Sbjct: 352 TLPDQVPPEVVKDRYERLVALVNEIAWEENKRLVGRRVELMVAEGEGRKDAATHRLSGRG 411

Query: 433 PWLQSVVLNSK---NHNIGDIIKVRITDVKISTLYGE 466
           P  + V            GD+  V +T      L  +
Sbjct: 412 PDNRLVHFAPPAGVEIRPGDLATVEVTYAAPHHLVAD 448


>gi|226306246|ref|YP_002766206.1| tRNA-thiotransferase [Rhodococcus erythropolis PR4]
 gi|226185363|dbj|BAH33467.1| putative tRNA-thiotransferase [Rhodococcus erythropolis PR4]
          Length = 515

 Score =  433 bits (1114), Expect = e-119,   Method: Composition-based stats.
 Identities = 158/469 (33%), Positives = 257/469 (54%), Gaps = 22/469 (4%)

Query: 12  HMVSQIVDQCIVP-QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC 70
              + + +    P + + V++YGCQMNV+DS R+  +    GY +  +  D DL+V NTC
Sbjct: 6   PEPTAVPEATATPVRTYEVRTYGCQMNVHDSERLSGLLEDAGYSKAETGTDPDLVVFNTC 65

Query: 71  HIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGP 130
            +RE A  K+Y  L ++   K +      D+ + V GC+AQ + + +++++P V+VV G 
Sbjct: 66  AVRENADNKLYGNLSQLAPNKEA----NPDMQIAVGGCLAQKDRDTVVKKAPFVDVVFGT 121

Query: 131 QTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190
                LP LL+RAR  +R         + F           R+     +++I  GC+  C
Sbjct: 122 HNIGSLPALLDRARHNQRAEVEILDALEAF----PSTLPAKRESAYAGWVSISVGCNNTC 177

Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT---- 246
           TFC+VP  RG E+ R    ++ E + L+D GV E+TLLGQNVNA+     D E+      
Sbjct: 178 TFCIVPALRGKEVDRRPGDILAEVQALVDEGVSEVTLLGQNVNAYGVSFADPEQPRDRGA 237

Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306
           F+ LL +   I GL R+R+T+ HP + +D +I+A      + P LH+P+QSGSD++LK+M
Sbjct: 238 FASLLKACGHIDGLERVRFTSPHPAEFTDDVIEAMATTPNVCPQLHMPLQSGSDKVLKAM 297

Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
            R +   +Y  II+++R+  P  AI++D IVGFPGET++DF+ T+D+V K  ++ A++F+
Sbjct: 298 KRSYRKSKYLGIIEKVRAAMPHAAITTDIIVGFPGETEEDFQETLDVVRKARFSNAYTFQ 357

Query: 367 YSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEK 425
           YS R GTP + M +Q+ + V  ER + L     E  +  N   VG  +E+L+    G++ 
Sbjct: 358 YSKRPGTPAAEMADQLPKEVVQERYMRLLAVQEEVNIEENRKLVGTEVELLVAAGEGRKN 417

Query: 426 G---KLVGRSPWLQSVVLNSKNHN-----IGDIIKVRITDVKISTLYGE 466
               +L GR+   + V    + +       GD++ V +T      L  +
Sbjct: 418 AATHRLSGRARDGRLVHFRPEGNLDGTIRPGDVVTVVVTHGAPHHLVAD 466


>gi|68171116|ref|ZP_00544525.1| Protein of unknown function UPF0004:tRNA-i(6)A37 modification
           enzyme MiaB [Ehrlichia chaffeensis str. Sapulpa]
 gi|67999441|gb|EAM86081.1| Protein of unknown function UPF0004:tRNA-i(6)A37 modification
           enzyme MiaB [Ehrlichia chaffeensis str. Sapulpa]
          Length = 442

 Score =  433 bits (1113), Expect = e-119,   Method: Composition-based stats.
 Identities = 221/446 (49%), Positives = 316/446 (70%), Gaps = 12/446 (2%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
            ++KSYGCQMNVYDSL ME++    G+  VN   +A++++LNTCHIREKA+EK+YS LG+
Sbjct: 4   LYIKSYGCQMNVYDSLIMENIIKPLGFTVVNEPSEANIVILNTCHIREKASEKLYSELGK 63

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF- 145
           +R ++ +      DL +VVAGCVAQAEGE+I  R+P V++VVGPQ+ + LPEL+ +AR  
Sbjct: 64  MRKIQET-----KDLTIVVAGCVAQAEGEQIFARAPFVDIVVGPQSIHTLPELIIKARRM 118

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            K+V++ D+ +  KF+ + + +  Y + + V+AF+++QEGC+KFCTFCVVPYTRG E SR
Sbjct: 119 KKQVINIDFPIISKFDAIPVEE--YTKNQEVSAFISVQEGCNKFCTFCVVPYTRGEEYSR 176

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           ++  + +EA  L D+GV EITL+GQNVNA+ G    G +     L+  L++I  + R+RY
Sbjct: 177 TVEAIFNEALVLSDSGVKEITLIGQNVNAYHG-TYKGCEWDLGKLIQYLAKIPNIERIRY 235

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
           TTSHPRDM   L +AH     LMP++HLP+QSGSDRILK MNR+HTA EY  II+ +R  
Sbjct: 236 TTSHPRDMHQSLYEAHRSETKLMPFVHLPIQSGSDRILKKMNRKHTAEEYIDIINNLRKQ 295

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
           RPDIA SSDFIVGFPGET++DF  TM LV ++ ++QA+SFKYSPR GTP +    Q+ E 
Sbjct: 296 RPDIAFSSDFIVGFPGETEEDFEHTMKLVQEVNFSQAYSFKYSPRPGTPSAEYPNQIPEE 355

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKGKLVGRSPWLQSVVLNSKN 444
           +K++R+  LQ+ LREQQ++FN   +GQ   VL   K GK   +++G++ ++QS  +N+ N
Sbjct: 356 IKSQRIFRLQELLREQQLAFNRNMIGQTCSVLFNNKKGKFDNQIIGKTEYMQSCYINTDN 415

Query: 445 HN--IGDIIKVRITDVKISTLYGELV 468
            N     I+ ++I D   +++ G +V
Sbjct: 416 PNQFYNSILPIKIIDAYQNSVTGIVV 441


>gi|332292317|ref|YP_004430926.1| RNA modification enzyme, MiaB family [Krokinobacter diaphorus
           4H-3-7-5]
 gi|332170403|gb|AEE19658.1| RNA modification enzyme, MiaB family [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 483

 Score =  433 bits (1113), Expect = e-119,   Method: Composition-based stats.
 Identities = 169/457 (36%), Positives = 259/457 (56%), Gaps = 21/457 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F++SYGCQMN  DS  +  +  ++GY     +++ADL+++NTC IREKA   V   L
Sbjct: 24  KKLFIESYGCQMNFADSEVVASILANEGYNTTQILEEADLVLVNTCSIREKAEVTVRKRL 83

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            + + +K    K+  ++ V V GC+A+    + L    IV++VVGP  Y  +P LL    
Sbjct: 84  EKYQAVKR---KQNPNMKVGVLGCMAERLKSKFLEEEKIVDLVVGPDAYKDIPNLLSEVE 140

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G+  V+   S E+ +  +S V        GVTAF++I  GCD  CTFCVVP+TRG E S
Sbjct: 141 EGRNAVNVILSKEETYGDISPVRL---LTNGVTAFVSITRGCDNMCTFCVVPFTRGRERS 197

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNA--WRGKGL--DGEKCT---------FSDLL 251
           R    +++E + L + G  EITLLGQNV++  W G GL  D +K +         F+ L+
Sbjct: 198 RDPQSILEEVQDLAEKGFKEITLLGQNVDSYLWYGGGLKKDFDKASEMAKATAVNFAQLM 257

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
            ++++ +  +R+R++TS+P+DM+  +I+       +  Y+HLPVQSGSDRIL+ MNR+HT
Sbjct: 258 DTVAKAQPKMRIRFSTSNPQDMTLDVIEVMAKHKNVCNYIHLPVQSGSDRILQLMNRQHT 317

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
             EY+ +ID I+++ P I IS D I GFP ET++D + T+DL++ + Y   F F YS R 
Sbjct: 318 VAEYKTLIDNIKNLIPHIGISQDMITGFPTETEEDHQGTLDLINYVKYDFGFMFYYSERP 377

Query: 372 GTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLV 429
           GT     M + +   +K  RL  +    R            Q +E+LIEK  K+ K +  
Sbjct: 378 GTMAERKMEDDIPLAIKKRRLQDVIDLQRAISRDNLLRYQDQTVEILIEKESKKNKDEWS 437

Query: 430 GRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGE 466
           GR+      V    ++ +GD + V+I +    TL GE
Sbjct: 438 GRNDQNVVAVFPKGDYKVGDFVNVKINECTTGTLIGE 474


>gi|315924594|ref|ZP_07920813.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Pseudoramibacter
           alactolyticus ATCC 23263]
 gi|315622124|gb|EFV02086.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Pseudoramibacter
           alactolyticus ATCC 23263]
          Length = 443

 Score =  433 bits (1113), Expect = e-119,   Method: Composition-based stats.
 Identities = 162/448 (36%), Positives = 259/448 (57%), Gaps = 15/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + + + +YGCQMN  DS ++  M  + GY        A L+V+NTC +RE A  + +  +
Sbjct: 7   KTYKMITYGCQMNENDSEKLSGMLKAMGYTPTEDETTAGLVVMNTCSVRENADVRFFGNV 66

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G  +++K    K+  DL++ V GC+ Q     ++I   +P V++V G    +R PELL  
Sbjct: 67  GNFKHIK----KKNPDLILAVCGCMMQQPQIVKKIKEDNPQVDIVFGTHNLHRFPELLAN 122

Query: 143 ARF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
            +  G R ++     +   E L +     +R+    ++++I +GC+ FCT+C+VPYTRG 
Sbjct: 123 YQASGNRTIEIYDDDDGLIENLPV-----DRRYPFKSYVSIMKGCNNFCTYCIVPYTRGR 177

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E+SR   +++DE + L+ +G  E+TLLGQNVN++     DG    F+DLL  ++ I+GL 
Sbjct: 178 EVSRPHEKIIDEVKALVADGCLEVTLLGQNVNSYGNDRKDG--YGFADLLRDVNAIEGLE 235

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+ TSHP+DM+D +I A    D + P +HL VQSGS ++LK+M+R +T  +   ++++
Sbjct: 236 RIRFMTSHPKDMTDEVIDAVAACDKVCPVVHLAVQSGSTKVLKAMHRGYTKEKIIALVEK 295

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +    P +AI++D IVGFPGET+ DF  T+D+V +  +  AFSF YS R GTP + M +Q
Sbjct: 296 MHKRIPHVAITTDLIVGFPGETETDFEETLDIVRRCHFDAAFSFLYSIRTGTPAAKMPDQ 355

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVL 440
           + EN+K ERL  L K L  +    N     Q ++VL+E      + +L GR+   + V  
Sbjct: 356 IPENIKHERLNRLLKVLHSEGNERNLWFQDQTVDVLVEGKSTHNEDRLTGRTMNGKLVNF 415

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
           +     IG I+ V I   +  +L G  V
Sbjct: 416 DGNAATIGTIVPVHIDCARTFSLDGHAV 443


>gi|256390815|ref|YP_003112379.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Catenulispora
           acidiphila DSM 44928]
 gi|256357041|gb|ACU70538.1| RNA modification enzyme, MiaB family [Catenulispora acidiphila DSM
           44928]
          Length = 509

 Score =  433 bits (1113), Expect = e-119,   Method: Composition-based stats.
 Identities = 169/457 (36%), Positives = 254/457 (55%), Gaps = 21/457 (4%)

Query: 18  VDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNS-MDDADLIVLNTCHIREKA 76
           +      + + V++YGCQMNV+DS R+  +    GY R      +AD++VLNTC +RE A
Sbjct: 1   MPDTATDKTYIVRTYGCQMNVHDSERLSGLLEGAGYVRAADGAGEADVVVLNTCAVRENA 60

Query: 77  AEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL 136
             ++Y  LG + ++K  R      + + V GC+AQ +  EI RR+P V+VV G      L
Sbjct: 61  DNRLYGNLGHLASVKAGR----PGMRIAVGGCLAQKDRGEITRRAPWVDVVFGTHNIGSL 116

Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
           P LLERAR             D F           R+    A++++  GC+  CTFC+VP
Sbjct: 117 PVLLERARVRDEAQVEILESLDVFPSTLPTR----RESAYAAWVSVSVGCNNTCTFCIVP 172

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256
             RG E  R   +++ E   L+  GVCE+TLLGQNVNA+  +   G++  F+ LL +  +
Sbjct: 173 ALRGKEKDRRPGEILSEIEALVAEGVCEVTLLGQNVNAYGSEF--GDREAFAKLLRACGQ 230

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           I+GL R+R+T+ HPRD +D +I A  +   +MP LH+P+QSGSD +L++M R +    Y 
Sbjct: 231 IEGLERVRFTSPHPRDFTDDVIAAMAETPNVMPQLHMPLQSGSDTVLRAMRRSYRQDRYL 290

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
            II+R+R+  PD AI++D IVGFPGET++DF  TM +V +  ++ AF+F+YS R GTP +
Sbjct: 291 GIIERVRAAMPDAAITTDIIVGFPGETEEDFEQTMHVVRQARFSAAFTFQYSKRPGTPAA 350

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKG---KLVGRS 432
            M EQV + V   R   L     E     N   VG+ +E+L+ E  G++ G   ++ GR+
Sbjct: 351 TMEEQVPKAVVQARYERLVALQEEISWEENKKQVGRTVELLVAEGEGRKDGETRRMSGRA 410

Query: 433 PWLQSVVLNSKN------HNIGDIIKVRITDVKISTL 463
           P  + V     +         GD++ V +T      L
Sbjct: 411 PDNRLVHFAVGDTAAADLPRPGDMVSVEVTYAAPHHL 447


>gi|304383561|ref|ZP_07366021.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella marshii DSM
           16973]
 gi|304335371|gb|EFM01641.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella marshii DSM
           16973]
          Length = 441

 Score =  433 bits (1113), Expect = e-119,   Method: Composition-based stats.
 Identities = 161/447 (36%), Positives = 255/447 (57%), Gaps = 11/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F+++YGCQMNV DS  +  +    GYE   S+++AD + LNTC +RE A  K+Y  L
Sbjct: 2   KKLFIETYGCQMNVADSEVVASVMQMAGYEMCESIEEADAVFLNTCSVRENAENKIYHRL 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             +      + +    +++ V GC+A+   ++++      ++V GP +Y  LP+L+ +A 
Sbjct: 62  EALHAKSTKKHR----VILGVLGCMAERVRDDLIENH-HADLVAGPDSYLNLPDLIAQAE 116

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G++ ++ + S  + +  +       N   G   F++I  GCD FC +C+VPYTRG E S
Sbjct: 117 LGQKAINIELSKTETYRDIVPQRIMGNHISG---FVSIMRGCDNFCHYCIVPYTRGRERS 173

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE-KCTFSDLLYSLSEIKGLVRL 263
           R +  +V E   L + G  EITLLGQNVN++R +  DG  +  F  LL  ++     +R+
Sbjct: 174 RDIESIVKEVHDLQEKGFKEITLLGQNVNSYRFQPADGSSEIGFPQLLRHVARAFPKMRV 233

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R++T HP+DMSD  +    +   L  ++HLPVQSGS+++LK MNRR+TA  YR  +  +R
Sbjct: 234 RFSTPHPKDMSDETLHVIAEEPNLCNHIHLPVQSGSNKVLKLMNRRYTAEWYRDRVAAVR 293

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN-MLEQV 382
            + PD  +S+D  VG+ GE ++D R ++ L+++I Y  AF FKYS R GT  S  + + V
Sbjct: 294 RIIPDCGLSTDIFVGYHGEEEEDHRQSLALMEEIVYDSAFMFKYSERPGTYASKHLPDNV 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441
            E +K  RL  +           N    G++ EVL+E   K    +L GR+   + VV +
Sbjct: 354 PEEIKLRRLAEMIDLQTRMSAVANKKDEGKMFEVLVENFSKRSRQQLCGRTQQNKMVVFD 413

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
             NH+IG+ + VRIT    +TL GE+V
Sbjct: 414 KGNHHIGEFLNVRITGSTSATLLGEVV 440


>gi|255020721|ref|ZP_05292781.1| tRNA-i(6)A37 methylthiotransferase [Acidithiobacillus caldus ATCC
           51756]
 gi|254969837|gb|EET27339.1| tRNA-i(6)A37 methylthiotransferase [Acidithiobacillus caldus ATCC
           51756]
          Length = 437

 Score =  433 bits (1113), Expect = e-119,   Method: Composition-based stats.
 Identities = 198/434 (45%), Positives = 282/434 (64%), Gaps = 11/434 (2%)

Query: 36  MNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSR 94
           MN YDS R+ ++  +  G + V+    AD++VLNTC IREKA +KVY+ LG  R  K SR
Sbjct: 1   MNEYDSERIGELLAASHGLQLVDDPARADVLVLNTCSIREKAEDKVYTQLGFWRPFKESR 60

Query: 95  IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV-VDTD 153
                ++++ V GCVA  EGE + RR+P V++V GPQT +RL ++L+  R  ++  VD  
Sbjct: 61  ----PEVIIAVGGCVASQEGESLRRRAPFVDIVFGPQTLHRLADMLDACRAQRQPQVDLR 116

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           +   +KF+RL    G    + G TAF+T+QEGCDKFCTFCVVP+TRG E SR +  ++ E
Sbjct: 117 FPELEKFDRLPQRPG----REGPTAFVTVQEGCDKFCTFCVVPHTRGREFSRPMPDILRE 172

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
            R+L+D GV E+TLLGQNVNA+RG      +   ++LL  L+ I  L+RLRYTTSHP ++
Sbjct: 173 VRQLVDQGVREVTLLGQNVNAYRGATGLIGEGDLAELLERLARIPDLLRLRYTTSHPNNL 232

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
            D LI AH D+ +L  +LHLPVQSGSDRIL+ M+R+H+   Y   I R+R+ R DI ISS
Sbjct: 233 DDRLIAAHRDIPILAAHLHLPVQSGSDRILRRMHRKHSVASYLDKIARLRAARSDIRISS 292

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLC 393
           DFIVGFPGETD DF AT++L++ + + Q+FSFKYSPR  TP   + + V E VK ERL  
Sbjct: 293 DFIVGFPGETDADFAATLELIEAVRFDQSFSFKYSPRPNTPALKLKDSVPEGVKDERLAI 352

Query: 394 LQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLNSKNHNIGDIIK 452
           LQ ++     ++++A VG + +VL+     ++  +  G++   +SV      +  G ++ 
Sbjct: 353 LQGRIHGLARAYSEALVGTVQDVLVTGPSRRDPCEWTGKTSCNRSVNFAGPANLSGQMLP 412

Query: 453 VRITDVKISTLYGE 466
           +RIT    ++L GE
Sbjct: 413 IRITAALANSLRGE 426


>gi|145295854|ref|YP_001138675.1| (dimethylallyl)adenosine tRNA methylthiotransferase
           [Corynebacterium glutamicum R]
 gi|229890500|sp|A4QEV7|MIAB_CORGB RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|140845774|dbj|BAF54773.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 526

 Score =  433 bits (1113), Expect = e-119,   Method: Composition-based stats.
 Identities = 153/455 (33%), Positives = 247/455 (54%), Gaps = 21/455 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + + VK+YGCQMNV+DS R+  +    GY         DL+V NTC +RE A  ++Y  L
Sbjct: 28  RTYEVKTYGCQMNVHDSERLSGLLEEAGYVAAPEDATPDLVVFNTCAVRENADMRLYGTL 87

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           G +R++K         + + V GC+AQ + + +++++P V+VV G      LP LL+RA 
Sbjct: 88  GNLRSVKEK----NPGMQIAVGGCLAQKDKDTVVKKAPWVDVVFGTHNIGSLPTLLQRAE 143

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
              +         ++F  +        R+     ++++  GC+  CTFC+VP  RG E  
Sbjct: 144 HNAQAEVEIVDSLEQFPSVLPA----KRESAYAGWVSVSVGCNNTCTFCIVPSLRGKEQD 199

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE----KCTFSDLLYSLSEIKGL 260
           R    ++ E + L+D GV E+TLLGQNVNA+    +D E    +  FS LL +  EI+GL
Sbjct: 200 RRPGDILAEVQALVDQGVTEVTLLGQNVNAYGVNFVDPELERDRSAFSKLLRACGEIEGL 259

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+T+ HP + +  +I A  +   + P LH+P+QSGSD++LK M R + + ++  I+D
Sbjct: 260 ERVRFTSPHPAEFTSDVIDAMAETPNICPQLHMPLQSGSDKVLKEMRRSYRSKKFLSILD 319

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
            +R+  P  +I++D IVGFPGET++DF+AT+D+V K  +  A++F+YSPR GTP +    
Sbjct: 320 EVRAKIPHASITTDIIVGFPGETEEDFQATLDVVKKARFTSAYTFQYSPRPGTPAAEYEN 379

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG----KLVGRSPWLQ 436
           Q+ + V  ER   L     +     N   +G  +E+L++  G  K     ++ GR+   +
Sbjct: 380 QLPKEVVQERYERLMVVQEQVCEEENQKLIGTTVELLVQAGGGRKNDATKRMSGRARDGR 439

Query: 437 SVVL-----NSKNHNIGDIIKVRITDVKISTLYGE 466
            V              GD + V +T+ K   L  +
Sbjct: 440 LVHFAPEGDIDGEIRPGDFVTVTVTEAKPFFLIAD 474


>gi|313673797|ref|YP_004051908.1| tRNA-i(6)a37 thiotransferase enzyme miab [Calditerrivibrio
           nitroreducens DSM 19672]
 gi|312940553|gb|ADR19745.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Calditerrivibrio
           nitroreducens DSM 19672]
          Length = 438

 Score =  433 bits (1113), Expect = e-119,   Method: Composition-based stats.
 Identities = 181/447 (40%), Positives = 270/447 (60%), Gaps = 14/447 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + ++ ++K++GCQMN YDS R+  +F   GY++ +  ++AD  V+NTC +REK  EKV S
Sbjct: 1   MIKKVYIKTFGCQMNEYDSQRILSIFEESGYDKTDDPEEADFAVINTCSVREKPKEKVKS 60

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +GR++  KNS      D  + +AGCVAQ +GE IL+ +  V++V+G     +L E + R
Sbjct: 61  EIGRLKRYKNS----NPDFKIAIAGCVAQEDGEAILKENKSVDLVIGTDGIPKLYEAISR 116

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
              G+R+  T++  +D           +NR   V+AF+TI +GCD FC++C+VPY RG E
Sbjct: 117 VEKGERLAITEFYHDD------FTVPIFNRNSSVSAFVTIMKGCDNFCSYCIVPYVRGRE 170

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR   +++DE + L+DNGV E+T LGQNVN+  GK LD EK  F+  LY  ++I GL R
Sbjct: 171 KSRHYKEILDEVKFLVDNGVREVTFLGQNVNS-YGKTLD-EKINFTQFLYMAAQIDGLNR 228

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+ TSHP+D ++ L+        +  YLHLP+Q+GS+ ILK MNR +T  EY + I   
Sbjct: 229 IRFVTSHPKDFNNDLVDLIASERKICEYLHLPLQAGSNDILKKMNRGYTFEEYEEKIFNA 288

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           +     +A+SSDFIVGFPGETD+DF  T+  V  I Y   F+FKYSPR GT  S+M + +
Sbjct: 289 KEKIKGLALSSDFIVGFPGETDEDFEQTLKAVKNIEYETIFAFKYSPRPGTKASSMQDNI 348

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVLN 441
            +  KA RL  L    +    +     +G+  E+L+E   K+      GR+   + V   
Sbjct: 349 SDVEKANRLKKLLDAQQIITDNLLKRQIGETQEILVEGKSKKDAHVYSGRNRKNRIVNFT 408

Query: 442 SKNHN-IGDIIKVRITDVKISTLYGEL 467
           S+     G+I+KV+IT  K ++L+G L
Sbjct: 409 SEKSLQNGEIVKVKITQAKKNSLFGNL 435


>gi|225018519|ref|ZP_03707711.1| hypothetical protein CLOSTMETH_02466 [Clostridium methylpentosum
           DSM 5476]
 gi|224948720|gb|EEG29929.1| hypothetical protein CLOSTMETH_02466 [Clostridium methylpentosum
           DSM 5476]
          Length = 496

 Score =  432 bits (1112), Expect = e-119,   Method: Composition-based stats.
 Identities = 171/441 (38%), Positives = 252/441 (57%), Gaps = 14/441 (3%)

Query: 30  KSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRN 89
           ++YGCQ NV D  ++  +    GYE  +  D+AD I+ NTC +RE A ++V+  +G + +
Sbjct: 44  RTYGCQANVADGEKIRGILHEIGYEFTDEPDEADFILFNTCAVRENAEDRVFGNIGALAH 103

Query: 90  LKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERAR-FG 146
           LK    KE  +L++ V GC+ Q E   E+I +  P V +V G    +RLPEL+ RA    
Sbjct: 104 LK----KENPNLIIAVCGCMMQQEHIVEKIRKSYPYVGLVFGTHVVHRLPELVYRALTEH 159

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           KRV D+  S     E L +V     R+ G  A+L I  GC+ FCT+C+VPY RG E SR 
Sbjct: 160 KRVFDSTQSDGVIAEDLPVV-----REEGSKAWLPIMYGCNNFCTYCIVPYVRGRERSRE 214

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
              ++ EAR+L+ +G  EITLLGQNVN+  GK L  +   FS LL  +++I G  R+R+ 
Sbjct: 215 PDAILREARQLVADGYKEITLLGQNVNS-YGKNLP-QPIRFSQLLRMINDIPGDFRIRFM 272

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
           TSHP+D +  LI    D D +  +LHLPVQ GSD IL+ MNR +T  +Y ++++  +   
Sbjct: 273 TSHPKDATRELIDTIADCDKVCNHLHLPVQCGSDEILRRMNRGYTCEQYLELVEYAKKRI 332

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           P +++SSD IVGFPGET ++F+ T+ L++ +GY   ++F YS R+GT  +N  + VD   
Sbjct: 333 PGLSLSSDIIVGFPGETYENFQGTLKLIEAVGYDLLYTFIYSKRVGTKAANYDDPVDPKE 392

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHN 446
           K+     L +   +   +  +  VGQ   VL++  GK++G L GR      V        
Sbjct: 393 KSRWFRELLEVQAKIGRANFEGYVGQTARVLVDGTGKKEGMLTGRDEHNILVEFEGPPAL 452

Query: 447 IGDIIKVRITDVKISTLYGEL 467
           IG    V+IT    + L G L
Sbjct: 453 IGSFADVKITQAHQAALVGSL 473


>gi|145593989|ref|YP_001158286.1| RNA modification protein [Salinispora tropica CNB-440]
 gi|229890661|sp|A4X4V8|MIAB_SALTO RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|145303326|gb|ABP53908.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Salinispora tropica
           CNB-440]
          Length = 499

 Score =  432 bits (1112), Expect = e-119,   Method: Composition-based stats.
 Identities = 166/464 (35%), Positives = 258/464 (55%), Gaps = 21/464 (4%)

Query: 17  IVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDD-ADLIVLNTCHIREK 75
                  P+ + V++YGCQMNV+DS R+  +    GY R  + DD  D++V NTC +RE 
Sbjct: 2   TTAAASSPRTYQVRTYGCQMNVHDSERIAGLLEQAGYLRAGAADDTPDVVVFNTCAVREN 61

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135
           A  ++Y  LG++R  K+       ++ + V GC+AQ +  EI+RR+P V+VV G      
Sbjct: 62  ADNRLYGNLGQLRPRKDQH----PEMQIAVGGCLAQKDRSEIVRRAPWVDVVFGTHNIGS 117

Query: 136 LPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
           LP LLERAR             + F           R+     +++I  GC+  CTFC+V
Sbjct: 118 LPVLLERARHNAAAEVEILESLEVFPSTLPTR----RESTYAGWVSISVGCNNTCTFCIV 173

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
           P  RG E  R   +++ E R L+D GV E+TLLGQNVN++  +   G++  F  LL +  
Sbjct: 174 PALRGKEKDRRPGEILSEVRSLVDEGVLEVTLLGQNVNSYGIEF--GDRYAFGKLLRACG 231

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
           +I GL R+R+T+ HP+D +D +I A  +   + P LH+P+QSGSD +L++M R + +  Y
Sbjct: 232 DIDGLERVRFTSPHPKDFTDDVIAAMAETPNVCPSLHMPLQSGSDDMLRAMRRSYRSERY 291

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
             II+++R+  PD AI++D IVGFPGET+ DF  T+D+V    ++ AF+F+YS R GTP 
Sbjct: 292 LGIIEKVRAAMPDAAITTDIIVGFPGETEADFERTLDVVRAARFSSAFTFQYSKRPGTPA 351

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI---EK-HGKEKGKLVGR 431
           + M +Q+ + V  ER   L   + E   + N   +G+ +EVL+   E    +  G+L GR
Sbjct: 352 ATMADQLPKAVVQERYERLIDCVEEITWAENRRLLGKTVEVLVAVGEGRKDERTGRLSGR 411

Query: 432 SPWLQSVVLNSKNH----NIGDIIKVRITDVKISTLY--GELVV 469
           +   + V  ++ +       GDI++  +T      L   GE + 
Sbjct: 412 ARDGRLVHFDAGSLAGQVRPGDIVQTVVTYAAPHHLNADGEPLA 455


>gi|284032611|ref|YP_003382542.1| RNA modification enzyme, MiaB family [Kribbella flavida DSM 17836]
 gi|283811904|gb|ADB33743.1| RNA modification enzyme, MiaB family [Kribbella flavida DSM 17836]
          Length = 497

 Score =  432 bits (1112), Expect = e-119,   Method: Composition-based stats.
 Identities = 173/454 (38%), Positives = 251/454 (55%), Gaps = 18/454 (3%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
            V + + V++YGCQMNV+DS R+  +    GY R    D AD++V NTC +RE A  K+Y
Sbjct: 3   AVMRTYEVRTYGCQMNVHDSERLRGLLEDAGYVRAPEGDQADVVVFNTCAVRENADNKLY 62

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LG +  +K         L + V GC+AQ +   I +++P V+VV G      LP LLE
Sbjct: 63  GNLGHLAPVKAK----KPGLQIAVGGCLAQKDKATITQKAPWVDVVFGTHNIGALPVLLE 118

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           RAR  +          D F           R+   +A++++  GC+  CTFC+VP  RG 
Sbjct: 119 RARIEQESQVEILESLDVFPSTLPAR----RESAYSAWVSVSVGCNNTCTFCIVPALRGR 174

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E  R    V+ E + L+  GV E+TLLGQNVN++  +   G++  FS LL +  EI GL 
Sbjct: 175 EKDRRPGDVLAEVQALVAEGVLEVTLLGQNVNSYGVEF--GDRYAFSKLLRACGEIDGLE 232

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+T+ HPRD +  +I+A  +   +MP LH+P+QSGSDRILK+M R +    Y +II  
Sbjct: 233 RVRFTSPHPRDFTADVIEAMAETPNVMPSLHMPLQSGSDRILKTMRRSYRRDRYLKIISD 292

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R+  PD AI++D IVGFPGET+ DF+ T+D+V +  +A AF+F+YS R GTP  +M +Q
Sbjct: 293 VRAAMPDAAITTDIIVGFPGETEQDFQGTLDVVRQARFAGAFTFQYSKRPGTPAESMEDQ 352

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKG---KLVGRSPWLQS 437
           V   V  ER   L     E   S N A VG+ +EVL+ E  G++     +L GR+   + 
Sbjct: 353 VPREVVQERYERLVALQDEMAWSENKAIVGRSLEVLVAEGEGRKDAATHRLSGRARDNRL 412

Query: 438 VVLNSKN----HNIGDIIKVRITDVKISTLYGEL 467
           V             GD+  V +T      L  ++
Sbjct: 413 VHFALPEGVEPPRPGDLATVEVTYGAPHHLVADV 446


>gi|313901066|ref|ZP_07834554.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Clostridium sp. HGF2]
 gi|312954024|gb|EFR35704.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Clostridium sp. HGF2]
          Length = 478

 Score =  432 bits (1112), Expect = e-119,   Method: Composition-based stats.
 Identities = 170/448 (37%), Positives = 252/448 (56%), Gaps = 16/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +++++++YGCQ N  DS  +  +     +  V   +DADLI++NTC IR+ A +KV   +
Sbjct: 43  KKYYLRTYGCQANERDSETLAGILEEMNFTAVEHPEDADLILMNTCAIRKNAEDKVLGEI 102

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G ++ LK        DLL  + GC+AQ E    ++L     VN++ G    +RLPELL  
Sbjct: 103 GSLKRLKRK----KPDLLFGLCGCMAQEEDVVAKLLETYRHVNLIFGTHNIHRLPELLYD 158

Query: 143 AR-FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
               G R V+      D  E L +      R     A++ I  GCDKFCT+C+VPYTRG 
Sbjct: 159 VMVNGNRSVEVLSKEGDVIENLPV-----RRFGKHKAWVNIMYGCDKFCTYCIVPYTRGK 213

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR +  +++E R L   G  EITLLGQNVN+  GK L  E   F+ LL   ++I G+ 
Sbjct: 214 ERSRMMEDILEEVRILKAEGFKEITLLGQNVNS-YGKDLHMEG-GFAGLLEETAKI-GIE 270

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHP D +D +I      + +MP++HLPVQSG   ILK M RR+T  +Y  +  +
Sbjct: 271 RIRFTTSHPWDFTDEMIDVIARYENIMPFIHLPVQSGDSDILKIMGRRYTREQYLTLFHK 330

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I+   P  AIS+D IVGFP ET++ F+ T+ LVD+  +  AF+F YSPR GTP ++M + 
Sbjct: 331 IKERIPHCAISTDIIVGFPNETEEQFQNTLSLVDECRFDNAFTFIYSPREGTPAASMADN 390

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440
           V+  VK  RL  L ++        N+  +G +++VL++   K+  +   G +   + V  
Sbjct: 391 VELAVKQRRLQELNERWNLYAREKNEEYLGSVVKVLVDGASKKNPEVFSGYTETNKLVNF 450

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                  GDI+ V+IT  K  +L GE +
Sbjct: 451 RRTTAQSGDIVSVKITACKTFSLDGEQI 478


>gi|225572114|ref|ZP_03780978.1| hypothetical protein RUMHYD_00408 [Blautia hydrogenotrophica DSM
           10507]
 gi|225040448|gb|EEG50694.1| hypothetical protein RUMHYD_00408 [Blautia hydrogenotrophica DSM
           10507]
          Length = 488

 Score =  432 bits (1112), Expect = e-119,   Method: Composition-based stats.
 Identities = 167/458 (36%), Positives = 258/458 (56%), Gaps = 14/458 (3%)

Query: 12  HMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCH 71
             V ++  +      F V ++GCQMN  DS ++  +    GYE+ +S ++AD ++ NTC 
Sbjct: 40  KEVEKLSREAGRKLTFCVNTFGCQMNARDSEKLVGILEQAGYEKSDS-EEADFVLYNTCT 98

Query: 72  IREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVG 129
           +RE A  +VY  LG +  LK    K+   + + + GC+ Q     E+I +    V+++ G
Sbjct: 99  VRENANLRVYGRLGHLNRLK----KKNPHMRIALCGCMMQEAHVVEKIKKSYSFVDLIFG 154

Query: 130 PQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKF 189
               Y+ PELL       R++   +   D+     + D   +RK    + + I  GC+ F
Sbjct: 155 THNLYKFPELLANMLASDRMIIDIWEGTDQI----VEDLPTDRKYPFKSGVNIMFGCNNF 210

Query: 190 CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSD 249
           C++C+VPY RG E SR    ++ E  KL+ +GV E+ LLGQNVN+  GK LD E  +F+ 
Sbjct: 211 CSYCIVPYVRGRERSREPKAIIREIEKLVADGVREVMLLGQNVNS-YGKTLD-EPVSFAR 268

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
           LL  + +++GL R+R+ TSHP+D+SD LI+       +  +LHLP+QSGS RILK MNRR
Sbjct: 269 LLEEVEQVEGLERIRFMTSHPKDLSDELIQVMAKSQKICRHLHLPLQSGSSRILKEMNRR 328

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369
           +    Y +++++IR+  PDI++++D IVGFPGET+ DF  T+ +VD++GY  AF+F YS 
Sbjct: 329 YDQERYLELVEKIRAAMPDISLTTDLIVGFPGETESDFEETLKVVDQVGYDTAFTFIYSK 388

Query: 370 RLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKL 428
           R GTP + M +QV + V  ER   L K ++E+    +   +G   EVL+E+     +G L
Sbjct: 389 RSGTPAAAMEDQVPDEVVKERFDRLLKLVQERGRQESSRFLGTNQEVLVEEVSHHGEGLL 448

Query: 429 VGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGE 466
            GR      V    +   IG  + VR+   K     GE
Sbjct: 449 TGRMGQNLLVHFPGEKELIGKTVTVRLEQCKGFYYIGE 486


>gi|168702635|ref|ZP_02734912.1| probable MiaB protein-putative tRNA-thiotransferase [Gemmata
           obscuriglobus UQM 2246]
          Length = 492

 Score =  432 bits (1112), Expect = e-119,   Method: Composition-based stats.
 Identities = 167/464 (35%), Positives = 261/464 (56%), Gaps = 24/464 (5%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + Q+ ++++ GCQMNV DS  +      +GY+  +    AD+++ NTC +RE A +K YS
Sbjct: 1   MSQKVYIETVGCQMNVLDSELVIGALRKRGYDLTDDPAAADVLLFNTCSVREHAEDKTYS 60

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            LGR+R +K    ++    ++ V GC+AQ + + I +R+P V++VVG      +P+L+++
Sbjct: 61  ALGRVRLVK----RDKPGAVIGVLGCMAQKDQDAIRKRAPYVDMVVGTGQLGAVPDLVDK 116

Query: 143 ARFGKRVVDTDY---------SVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC 193
            R  +                 VE  F           R     A++ IQ GCDKFCT+C
Sbjct: 117 VRATREPQLAVSLGRADGGRNEVEASFVSYDPARDPSMRPTPFQAYVRIQIGCDKFCTYC 176

Query: 194 VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS 253
           VVP TRG E SR    + +E R+L+D G  E+TLLGQ VN++  +  D  +   SDL+  
Sbjct: 177 VVPSTRGPEQSRPPEHIWNEVRQLVDQGCKEVTLLGQTVNSYVYESGDT-RTRLSDLIAG 235

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
           + ++ GL R+++ T++P+DM+D L+ A  DL  ++ YLH+PVQSG D +LK M R +TA 
Sbjct: 236 MHDVAGLERIKFVTNYPKDMTDDLLDAVRDLPKVVKYLHVPVQSGCDEVLKRMKRSYTAA 295

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
            Y +++ R R + P +++SSDFIVGF GET++ F+ +M+LV +  +  +F FKYS R GT
Sbjct: 296 YYMEMLARCRELVPGVSVSSDFIVGFCGETEESFQKSMELVREARFKNSFIFKYSERGGT 355

Query: 374 PGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK------- 425
             +    + V E VK  R   L     E     + A VG+++EVL+E   + +       
Sbjct: 356 KAAERYPDDVPEEVKKRRNNDLLAVQNENSRLDHRAQVGRVVEVLVEGPSRREQSNRERG 415

Query: 426 --GKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
              +L GRS     VV +     IG+ +KV +TD    TLYG++
Sbjct: 416 ATMQLTGRSMADHIVVFDGTERLIGETVKVTVTDASPFTLYGDV 459


>gi|257466304|ref|ZP_05630615.1| MIAB protein [Fusobacterium gonidiaformans ATCC 25563]
 gi|315917461|ref|ZP_07913701.1| tRNA-methylthiotransferase MiaB protein [Fusobacterium
           gonidiaformans ATCC 25563]
 gi|313691336|gb|EFS28171.1| tRNA-methylthiotransferase MiaB protein [Fusobacterium
           gonidiaformans ATCC 25563]
          Length = 435

 Score =  432 bits (1112), Expect = e-119,   Method: Composition-based stats.
 Identities = 162/447 (36%), Positives = 251/447 (56%), Gaps = 16/447 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++  V +YGCQMNV +S +M+ +F + GYE    + ++D I LNTC +RE AA ++Y  L
Sbjct: 2   KKATVITYGCQMNVNESAKMKKIFENLGYEITEDIRESDAIFLNTCTVREGAATQIYGKL 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           G +  +K          ++ V GC AQ +G+E+L++ P++++V+G Q   RLP+ +E   
Sbjct: 62  GELMQVKA-----DRGSIIGVTGCFAQEQGKELLKKFPVIDIVMGNQNIGRLPQAIENIE 116

Query: 145 F--GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
               K VV TD+      E         +     TA + I  GC+ FCTFC+VPY RG E
Sbjct: 117 NQTEKHVVFTDH------EDDLPPRLDADFGSDQTASIAISYGCNNFCTFCIVPYVRGRE 170

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            S  L ++V +  + +  G  EI LLGQNVN++     +G+  TF+ LL  + +++G   
Sbjct: 171 RSVPLEEIVRDVDQYVKKGAKEIMLLGQNVNSYGHDFKNGD--TFAKLLTEICKVEGDFI 228

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+ + HPRD +D +I+     D +   LHLP+QSGS +ILK MNR +T  +Y  +  +I
Sbjct: 229 VRFVSPHPRDFTDDVIEVIAKEDKIAKCLHLPLQSGSSQILKRMNRGYTKEQYLALAHKI 288

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           +     +A+++D IVGFPGET++DF  T+++V +I Y  AF F YS R GT  + M EQ+
Sbjct: 289 QDKISGVALTTDIIVGFPGETEEDFLDTLEIVREINYDNAFMFMYSIRQGTRAATMQEQI 348

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVLN 441
            E++K ERL  L           +    G+ + VL+E   K+  + L GR+   + V+  
Sbjct: 349 PEDIKKERLQRLMDVQARCSYKESQKYQGKTVRVLVEGESKKNKEVLSGRTSTNKIVLFQ 408

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                 G  + V I + K  TLYG+LV
Sbjct: 409 GPISLKGSFVDVEIYECKTWTLYGKLV 435


>gi|88658201|ref|YP_507633.1| tRNA-i(6)A37 modification enzyme MiaB [Ehrlichia chaffeensis str.
           Arkansas]
 gi|123763750|sp|Q2GG00|MIAB_EHRCR RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|88599658|gb|ABD45127.1| tRNA-i(6)A37 modification enzyme MiaB [Ehrlichia chaffeensis str.
           Arkansas]
          Length = 442

 Score =  432 bits (1112), Expect = e-119,   Method: Composition-based stats.
 Identities = 221/446 (49%), Positives = 316/446 (70%), Gaps = 12/446 (2%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
            ++KSYGCQMNVYDSL ME++    G+  VN   +A++++LNTCHIREKA+EK+YS LG+
Sbjct: 4   LYIKSYGCQMNVYDSLIMENIIKPLGFTVVNEPSEANIVILNTCHIREKASEKLYSELGK 63

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF- 145
           +R ++ +      DL +VVAGCVAQAEGE+I  R+P V++VVGPQ+ + LPEL+ +AR  
Sbjct: 64  MRKIQET-----KDLTIVVAGCVAQAEGEQIFARAPFVDIVVGPQSIHTLPELIIKARRM 118

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            K+V++ D+ +  KF+ + + +  Y + + V+AF+++QEGC+KFCTFCVVPYTRG E SR
Sbjct: 119 KKQVINIDFPIISKFDAIPVEE--YTKNQEVSAFISVQEGCNKFCTFCVVPYTRGEEYSR 176

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           ++  + +EA  L D+GV EITL+GQNVNA+ G    G +     L+  L++I  + R+RY
Sbjct: 177 TVEAIFNEALVLSDSGVKEITLIGQNVNAYHG-TYKGCEWDLGKLIQYLAKIPNIERIRY 235

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
           TTSHPRDM   L +AH     LMP++HLP+QSGSDRILK MNR+HTA EY  II+ +R  
Sbjct: 236 TTSHPRDMHQSLYEAHRSETKLMPFVHLPIQSGSDRILKKMNRKHTAEEYIDIINNLRKQ 295

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
           RPDIA SSDFIVGFPGET++DF  TM LV ++ ++QA+SFKYSPR GTP +    Q+ E 
Sbjct: 296 RPDIAFSSDFIVGFPGETEEDFEHTMKLVQEVNFSQAYSFKYSPRPGTPSAEYPNQIPEE 355

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKGKLVGRSPWLQSVVLNSKN 444
           +K++R+  LQ+ LREQQ++FN   +GQ   VL   K GK   +++G++ ++QS  +N+ N
Sbjct: 356 IKSQRIFRLQELLREQQLAFNRNMIGQTCSVLFNNKKGKFDNQIIGKTEYMQSCYINTDN 415

Query: 445 HN--IGDIIKVRITDVKISTLYGELV 468
            N     I+ ++I D   +++ G +V
Sbjct: 416 TNQFYNSILPIKIIDAYQNSVTGIVV 441


>gi|240171189|ref|ZP_04749848.1| hypothetical protein MkanA1_17891 [Mycobacterium kansasii ATCC
           12478]
          Length = 532

 Score =  432 bits (1111), Expect = e-119,   Method: Composition-based stats.
 Identities = 168/456 (36%), Positives = 260/456 (57%), Gaps = 23/456 (5%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDD---ADLIVLNTCHIREKAAEKVY 81
           + + V++YGCQMNV+DS R+  +  + GY R     D   AD++V NTC +RE A  K+Y
Sbjct: 24  RTYQVRTYGCQMNVHDSERLAGLLEAAGYRRAADGSDFGDADVVVFNTCAVRENADNKLY 83

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             L  +   K    +   D+ + V GC+AQ + + +LRR+P V+VV G      LP LL+
Sbjct: 84  GNLSHLAPRK----RTNPDMQIAVGGCLAQKDRDVVLRRAPWVDVVFGTHNIGSLPTLLD 139

Query: 142 RARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           RAR  K   V+   +++     L        R+    A+++I  GC+  CTFC+VP  RG
Sbjct: 140 RARHNKVAQVEIAEALQQFPSSLPSA-----RESAYAAWVSISVGCNNSCTFCIVPSLRG 194

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG----EKCTFSDLLYSLSE 256
            EI RS + V+ E + L+D GV EITLLGQNVNA+     D      +  F++LL +   
Sbjct: 195 KEIDRSPADVLAEVQSLVDTGVLEITLLGQNVNAYGVSFADPALPRNRGAFAELLRACGR 254

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           I GL R+R+T+ HP + +D +I+A      + P LH+P+QSGSD +L++M R + A  Y 
Sbjct: 255 IPGLERVRFTSPHPAEFTDDVIEAMAQTPNVCPALHMPLQSGSDPVLRAMRRSYRADRYL 314

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
            II+R+R+  P  AI++D IVGFPGET++DF AT+D+V +  +A AF+F+YS R GTP +
Sbjct: 315 GIIERVRAAMPHAAITTDLIVGFPGETEEDFAATLDVVRQARFAAAFTFQYSKRPGTPAA 374

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEK---GKLVGRS 432
           +  EQ+ +++  +R   L +   +  +  N   VGQ +EVL+    G++     ++ GR+
Sbjct: 375 DFDEQLPKDIVRQRYERLIELQEQISLEGNRELVGQSVEVLVATGEGRKDSRTSRMSGRA 434

Query: 433 PWLQSVVLNSKN--HNIGDIIKVRITDVKISTLYGE 466
              + V   + +     GD+I  +IT      L  +
Sbjct: 435 RDGRLVHFRAGDQHVRPGDLITTQITGAAPHHLIAD 470


>gi|77918818|ref|YP_356633.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Pelobacter
           carbinolicus DSM 2380]
 gi|123756643|sp|Q3A594|MIAB_PELCD RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|77544901|gb|ABA88463.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Pelobacter carbinolicus
           DSM 2380]
          Length = 438

 Score =  432 bits (1111), Expect = e-119,   Method: Composition-based stats.
 Identities = 171/446 (38%), Positives = 276/446 (61%), Gaps = 11/446 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + F+++++GCQMNV DS ++  +  S GY  V+S + A+LI+LNTC IR +A  KVY  L
Sbjct: 2   KSFYLETFGCQMNVVDSEQIVGLVQSLGYSSVDSPEQANLIILNTCSIRARAERKVYGHL 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR + LK  R     +L++ V GCVAQ EG+ +L + P +++V G    +RL +++  A 
Sbjct: 62  GRFKPLKQRR----PELIIAVCGCVAQQEGQRMLEKVPYLDIVCGTHNIHRLADMVRDAE 117

Query: 145 FGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             + R V+ D+   DK  RL            V+ F+T+ +GCD FC++C+VP+ RG E+
Sbjct: 118 LHRARHVEVDFLEADKRRRLFPERAPSAE---VSRFVTVIQGCDNFCSYCIVPHVRGREV 174

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR  ++V++E R L++ G  EITL+GQNVN++  K  D  + +F+ LL  ++E+ GL R+
Sbjct: 175 SRPSAEVLEEVRLLVEQGAREITLIGQNVNSYGCKEDD--EISFASLLRKVAEVDGLERI 232

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+ TSHP+D+SD LI    DLD L  ++HLPVQ+G D +LK+M R +T  +Y   I+R+R
Sbjct: 233 RFMTSHPKDLSDELIDCFADLDKLCKHIHLPVQAGGDAVLKAMRRGYTRDQYLGRIERLR 292

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
            V P+I ++SD IVGFPGET+ +F  TMDL+++  + + +SF +S R GT  +++ + + 
Sbjct: 293 RVCPEIRMTSDVIVGFPGETESEFEQTMDLLERARFTEIYSFIFSARPGTSAADLPDDIP 352

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRSPWLQSVVLNS 442
           + VK +    +     E    ++   +GQ++ VL+E   ++  G+L GR+ W + V  + 
Sbjct: 353 KEVKQQWFDRMLALQEEITRQYHQMDIGQVLPVLVEGSSRQGNGQLFGRTTWNRIVNFDG 412

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
               +G I+ VR+T    ++  GE V
Sbjct: 413 NPDLVGRIVPVRLTVAYRNSHLGERV 438


>gi|119504409|ref|ZP_01626489.1| bifunctional enzyme involved in thiolation and methylation of tRNA
           [marine gamma proteobacterium HTCC2080]
 gi|119459917|gb|EAW41012.1| bifunctional enzyme involved in thiolation and methylation of tRNA
           [marine gamma proteobacterium HTCC2080]
          Length = 432

 Score =  432 bits (1111), Expect = e-119,   Method: Composition-based stats.
 Identities = 195/438 (44%), Positives = 279/438 (63%), Gaps = 13/438 (2%)

Query: 36  MNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSR 94
           MN YDS RM D+   S G    +  +DAD+++LNTC IREKA EKV+  LGR R LK + 
Sbjct: 1   MNEYDSARMADLLAESHGLALTDRAEDADVLLLNTCSIREKAQEKVFHQLGRWRPLKQA- 59

Query: 95  IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG-KRVVDTD 153
                +L++ V GCVA  EG EI +R+P V+++ GPQT +RLPE++E  R G   VVD  
Sbjct: 60  ---KPNLIIGVGGCVASQEGAEISKRAPFVDLIFGPQTLHRLPEMIEARRDGTPVVVDVS 116

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           +   +KF+RL        R  G +AF++I EGC K+CTFCVVPYTRG E+SR +  ++ E
Sbjct: 117 FPEIEKFDRLP-----EPRVDGPSAFVSIMEGCSKYCTFCVVPYTRGEEVSRPVDDIIAE 171

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
              L   GV E+ LLGQNVNA+RG    GE   F++LL+ ++ + G+ R+RYTTSHP + 
Sbjct: 172 IASLAGGGVKEVNLLGQNVNAYRGPNHLGESVDFAELLHLVNLVSGIERIRYTTSHPVEF 231

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
           SD LI+ + D+  L+ +LHLPVQSGSDR L +M R HTA EY+  I  +R +RP+I++SS
Sbjct: 232 SDALIQCYADIPALVDHLHLPVQSGSDRTLMAMKRGHTALEYKAKIRALRRIRPNISLSS 291

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLC 393
           DFI+GFPGE + DF ATM L+D IG+  +FSF YS R GTP +++ ++ +   K +RL  
Sbjct: 292 DFIIGFPGEDEKDFSATMKLIDDIGFDHSFSFIYSARPGTPAADLADETEMATKKQRLKI 351

Query: 394 LQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLNSKNH-NIGDII 451
           LQ ++ +Q  + + A VG    +L+     K+ G+L GR+   + V  +  +   IG   
Sbjct: 352 LQGRIAQQAAAISIAMVGSEQRILVTGVSKKDPGQLAGRTENNRVVNFSCDDSGLIGHFA 411

Query: 452 KVRITDVKISTLYGELVV 469
            V+I +   ++L G+L+ 
Sbjct: 412 DVKIVEALPNSLRGQLLA 429


>gi|253699420|ref|YP_003020609.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Geobacter sp.
           M21]
 gi|251774270|gb|ACT16851.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Geobacter sp. M21]
          Length = 441

 Score =  432 bits (1111), Expect = e-119,   Method: Composition-based stats.
 Identities = 172/444 (38%), Positives = 261/444 (58%), Gaps = 9/444 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ +++++GCQMNV DS ++  +    GY++     DADL++LNTC IR  A ++VY  L
Sbjct: 5   KKLYLETFGCQMNVSDSEKIVTLMKGMGYQQTQDPVDADLVLLNTCSIRATAEQRVYGHL 64

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           G+ +++K    K    L++ V GCVAQ EGE++L+++P VN+V G    + L  ++  A 
Sbjct: 65  GKFKSIK----KGKPGLIIGVGGCVAQQEGEKLLKKAPFVNLVFGTHNLHLLQGMVAAAE 120

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            GKR   TD+  ++K   L         + GVT F+T+ +GCD FC +C+VP+ RG EIS
Sbjct: 121 QGKRSSQTDFLDDEKRFDLFP---HAEAEGGVTRFVTVMQGCDNFCAYCIVPHVRGREIS 177

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           RS  +VV+E R L   GV E+TLLGQNVN+       GE   F DLL  ++++ G+ R+R
Sbjct: 178 RSAVKVVEEVRALAGGGVTEVTLLGQNVNS-YCSKQPGEP-DFPDLLRLVAQVDGIERIR 235

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +TTSHP+DMS  LI+   DL  L P++HLP QSGSDR+L+ MNR +TA +Y   +  ++ 
Sbjct: 236 FTTSHPKDMSPRLIECFADLPKLAPHIHLPAQSGSDRVLERMNRGYTAQQYLAKVAALKE 295

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             P I  + D IVGFPGE +  F+ TM L++++ YA  FSF YS R GT  +   +    
Sbjct: 296 ACPAIQFTGDMIVGFPGEDEAAFQETMALMEEVRYADLFSFIYSARPGTKAAEYADDATR 355

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
             K  RL  LQ   ++  ++ N +  G + +VL+E        L GR+   +  V+    
Sbjct: 356 AEKQGRLERLQAAQKKTTLARNRSLEGTVQKVLVEGLSSTGDSLFGRTGGNRGTVMAGDP 415

Query: 445 HNIGDIIKVRITDVKISTLYGELV 468
              G ++ V+I +   + L GE+V
Sbjct: 416 SLAGRVLDVKIVEGLQTLLKGEIV 439


>gi|323140809|ref|ZP_08075724.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Phascolarctobacterium sp.
           YIT 12067]
 gi|322414691|gb|EFY05495.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Phascolarctobacterium sp.
           YIT 12067]
          Length = 442

 Score =  432 bits (1111), Expect = e-119,   Method: Composition-based stats.
 Identities = 156/446 (34%), Positives = 246/446 (55%), Gaps = 12/446 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + + + +YGCQMN  D+          GY        AD+I++NTC +RE A +K+   +
Sbjct: 6   KTYCLINYGCQMNESDTEHYAGQLQELGYAPNPDFHTADIIIVNTCCVRESAEKKIAGKI 65

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           G ++ +K +      D+++ VAGC+AQ +GE++ ++ P V++++G         LL    
Sbjct: 66  GELKAVKRA----NPDVVICVAGCMAQKDGEKLRKKHPQVDLLLGTAYVNDFKRLLLEFL 121

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
             ++         D     S  +G   R+    A++ I  GC+ FCT+C+VPY RG E S
Sbjct: 122 AERKAA----VYTDLTIHQSEFEGHMVRQSSFAAWIPIMYGCNNFCTYCIVPYVRGRERS 177

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           RS+  +V E    + +G  E TLLGQNVN+  GK   G+K  F+ LL  +  I G+ R+ 
Sbjct: 178 RSIDNIVAEIEAAVKDGYKEFTLLGQNVNS-YGKDF-GDKDAFAKLLRRVDIIPGVERIH 235

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           Y TSHPRDMS+ +IKA  + + +    H+P Q+GS  IL+ MNR +T  +Y +++  +R 
Sbjct: 236 YMTSHPRDMSEEVIKAVAECEHICENFHMPFQAGSSEILRRMNRGYTKEKYLELVKLVRK 295

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             PD  I++D IVGFPGET+++F  T+D+V ++G+  A++F YS R GTP + M  QV  
Sbjct: 296 YVPDATITTDIIVGFPGETEENFEETLDVVRQVGFTSAYTFIYSKRSGTPAAKMENQVPL 355

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV--LNS 442
            VK ERL  L     E  +  ++  VGQ +EVL E   K+K    GR+     V+  +  
Sbjct: 356 AVKKERLNRLMALQNENSLKCHEKLVGQTVEVLAEGPSKQKTVWNGRTRTGVLVLWPIED 415

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
           K + +G  + V+I   +   + G+ V
Sbjct: 416 KQYEVGQKVNVQIEAAQTWLVKGKAV 441


>gi|299142064|ref|ZP_07035198.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella oris C735]
 gi|298576526|gb|EFI48398.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella oris C735]
          Length = 444

 Score =  432 bits (1111), Expect = e-119,   Method: Composition-based stats.
 Identities = 158/452 (34%), Positives = 260/452 (57%), Gaps = 15/452 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + ++ ++++YGCQMNV DS  +  +    GY+   + ++AD I LNTC IRE A  K+Y+
Sbjct: 1   MNKKLYIETYGCQMNVADSEVVASVMKMAGYDVCENEEEADAIFLNTCSIRENAENKIYN 60

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            L  +    ++  K+G  L++ V GC+A+   +++++     ++V GP +Y  LP ++  
Sbjct: 61  RLDTL----HAEQKKGRQLILGVLGCMAERVKDDLIKNH-HASLVCGPDSYLNLPTMIAE 115

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
              G   VDT+ S  + +  +     G NR  G   F++I  GC+ FC +C+VPYTRG E
Sbjct: 116 CELGHATVDTNLSTTETYRNVLPQRIGGNRVSG---FVSIMRGCNNFCHYCIVPYTRGRE 172

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC----TFSDLLYSLSEIK 258
            SR +  ++ E + L D G  E+TLLGQNVN+  G   +G++     +F++LL  +++  
Sbjct: 173 RSRDVESILAEVKDLHDKGFKEVTLLGQNVNS-YGLLPNGKRPENGTSFAELLRKVAQSV 231

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
             +R+R+TTS+P DM++ ++ A  +   L  ++H P QSGSD+ILK MNR++T  EY   
Sbjct: 232 PDMRVRFTTSNPEDMTEDILHAIAEEPNLCKHIHFPAQSGSDKILKLMNRKYTREEYLDK 291

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN- 377
           +  I+ + P   +++D  VG+  ET++D + T+ LV ++G+  AF FKYS R GT  +  
Sbjct: 292 VAAIKRIIPGCGLTTDIFVGYHDETEEDQQLTLSLVKEVGFDSAFMFKYSERPGTYAAKH 351

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQ 436
           + + V E VK  RL  L           N    G    +L E+  K+    L+GR+   +
Sbjct: 352 LPDNVSEEVKIARLNELIHLQTAISGEQNKKDEGSEFVILTERFSKKDRNHLMGRTEQNK 411

Query: 437 SVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           +V++   NH+IG+ IKVRIT    +TL+GE +
Sbjct: 412 AVIIEKGNHHIGEFIKVRITGSTSATLFGEEI 443


>gi|71066321|ref|YP_265048.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Psychrobacter
           arcticus 273-4]
 gi|123775573|sp|Q4FQU4|MIAB_PSYA2 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|71039306|gb|AAZ19614.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Psychrobacter arcticus
           273-4]
          Length = 496

 Score =  432 bits (1111), Expect = e-119,   Method: Composition-based stats.
 Identities = 196/460 (42%), Positives = 284/460 (61%), Gaps = 24/460 (5%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
             ++ FV + GCQMNVYDS +M D+   S G E  + +D+AD++++NTC IREKA EKV+
Sbjct: 41  ATKKVFVTTQGCQMNVYDSGKMLDVLGDSHGMEVTHDIDEADVLLMNTCSIREKAQEKVF 100

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S LGR R LK  R     DL++ V GCVA  EG+ I +R+P V++V GPQT +RLPEL +
Sbjct: 101 SELGRWRKLKEKR----PDLVIGVGGCVASQEGDNIQKRAPYVDMVFGPQTLHRLPELYD 156

Query: 142 RARFGKRV--------VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC 193
           ++   + +        VD  +   +KF+ L        R  G  AF++I EGC K+C+FC
Sbjct: 157 QSHQQREIAPKNRIGTVDVSFPSIEKFDFLP-----EPRVEGFKAFVSIMEGCSKYCSFC 211

Query: 194 VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS 253
           VVPYTRG E+SR L  V+ E   L   GV EI LLGQNVN +RG+  DG  C F++LL+ 
Sbjct: 212 VVPYTRGEELSRPLDDVLAEIDSLAAQGVREINLLGQNVNGYRGEKDDGNICRFAELLHY 271

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
           +S + G+ R+RYTTSHP + +D +I A+  L  L+ +LHLPVQSGS+ IL +M R HT  
Sbjct: 272 VSHVDGVERIRYTTSHPLEFTDDIIDAYAQLPELVSHLHLPVQSGSNTILAAMKRNHTID 331

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
            Y   I++++++RPDI +SSDFI+GFPGETD DF+ T+ L  ++ +  ++SF YS R GT
Sbjct: 332 VYINQINKLKAIRPDIHLSSDFIIGFPGETDQDFQDTLTLAKELNFDHSYSFIYSKRPGT 391

Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKH-GKEKGKLVGRS 432
           P + + + V    K ERL   QK + +  ++     VG    VL+E+   +    L+G +
Sbjct: 392 PAAELPDDVSFKTKKERLAEFQKVIIDSTLAKTHEMVGTTTRVLVEQVANRHPDCLIGTA 451

Query: 433 PWLQSVVL----NSKNHNIGDIIKVRITD-VKISTLYGEL 467
              ++V+     +  +  +G I+ VRITD V    + GE+
Sbjct: 452 DNTRTVMFPYAVDKMDELLGKIVSVRITDFVSPHMVKGEI 491


>gi|225010050|ref|ZP_03700522.1| RNA modification enzyme, MiaB family [Flavobacteria bacterium
           MS024-3C]
 gi|225005529|gb|EEG43479.1| RNA modification enzyme, MiaB family [Flavobacteria bacterium
           MS024-3C]
          Length = 482

 Score =  432 bits (1111), Expect = e-119,   Method: Composition-based stats.
 Identities = 166/459 (36%), Positives = 265/459 (57%), Gaps = 22/459 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ +++SYGC MN  DS  +  +  ++GY     +++ADL+++NTC IR+KA + V   L
Sbjct: 24  KKLYIESYGCAMNFSDSEVVASILAAEGYHTTEVLEEADLVLINTCSIRDKAEQTVRKRL 83

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            + + +K    +    + V V GC+A+    ++L  + IV++VVGP  Y  +P LL+   
Sbjct: 84  EKFQAVK----RSNPQMKVGVLGCMAERLKTKLLEEAKIVDMVVGPDAYKDIPNLLKEVE 139

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G+  V+   S E+ +  ++ V         +TAF++I  GCD  CTFCVVP+TRG E S
Sbjct: 140 AGRNAVNVILSKEETYGDIAPVRLA---SNKITAFVSITRGCDNMCTFCVVPFTRGRERS 196

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNA--WRGKGL--DGEKCT---------FSDLL 251
           R    ++ E + L D G  E+TLLGQNV++  W G GL  D  K T         FS LL
Sbjct: 197 RDPLSILTEIQDLWDKGYKEMTLLGQNVDSYLWYGGGLKKDFNKATQMAQATAVNFSQLL 256

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
             ++     +R+R++TS+P+DM+  +++       +  ++HLPVQSGS+RILK+MNR+HT
Sbjct: 257 EKVALKFPEMRIRFSTSNPQDMTLDVVRTMAAHSNICKHIHLPVQSGSNRILKAMNRQHT 316

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
             EY  +ID IR++ PD AIS D I+GFP ET++D + T+ L++ + Y   + + YS R 
Sbjct: 317 REEYMALIDNIRAIIPDCAISQDMIIGFPNETEEDHKDTLSLMEYVKYDFGYMYSYSDRP 376

Query: 372 GTPGSN-MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LV 429
           GT     + + + E +K++RL  +    R+         VG+I  VL+E   K+  K L+
Sbjct: 377 GTAAGKNLADNIPETLKSKRLAEVIAVQRKHAAMHTQNRVGKIETVLVEGVSKKSEKDLM 436

Query: 430 GRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           GR+ +   VV   + + IGD++ V+ITD    TL G+ +
Sbjct: 437 GRNNYNAVVVFPRETYKIGDLVAVKITDCTSGTLLGKAI 475


>gi|307109122|gb|EFN57360.1| hypothetical protein CHLNCDRAFT_30275 [Chlorella variabilis]
          Length = 524

 Score =  432 bits (1111), Expect = e-119,   Method: Composition-based stats.
 Identities = 170/466 (36%), Positives = 261/466 (56%), Gaps = 20/466 (4%)

Query: 12  HMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCH 71
            ++S+        +++ + ++GCQMN  DS RM       GY  V     AD++V NTC 
Sbjct: 67  QVLSRPALAGGSGKKYHIITFGCQMNSADSERMAGCLEEAGYRCVEEAGHADVLVYNTCS 126

Query: 72  IREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ 131
           IREKA  K+YS LGR    K   +   GDL +VVAGCVA  EG  +LRR P V++V+GP 
Sbjct: 127 IREKAELKLYSALGRQAKRKRQHM---GDLKIVVAGCVAAQEGHALLRRVPEVDLVMGPH 183

Query: 132 TYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCT 191
              R+ +LLE+   G +VV  +++  ++            R   +TA++ +  GC++ CT
Sbjct: 184 HANRIGDLLEQVEAGSQVVAVEHAPIEEDITAP------RRDSAITAWVNVIHGCNEKCT 237

Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG--------E 243
           +C+VP+TRG E SR+   +  E   L + G  E+TLLGQNV+A  G+ L G         
Sbjct: 238 YCIVPFTRGQEQSRTPEAIRREMLSLGEAGYREVTLLGQNVDA-YGRDLPGFAPDNSGRR 296

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
             TF+DLL  + ++ G+ R+R+ TSHPR  ++ LI+A  +LD L  + H+P QSG + IL
Sbjct: 297 AWTFNDLLRHVHDVPGIARIRFATSHPRYFTERLIRACAELDKLCEFFHVPFQSGDNYIL 356

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           + M R +T   YR+++  IR   PD +IS D IVGFPGE+++ F  T+ LV+++G+ +  
Sbjct: 357 REMKRGYTHERYREMVHTIRRHMPDASISGDAIVGFPGESEEQFERTVALVEEVGFDRVN 416

Query: 364 SFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG- 422
           +  YSPR GTP +    QV + VKA+RL  L   +           +G+ +EVL+E    
Sbjct: 417 TAAYSPRPGTPAAVWDGQVADLVKADRLNRLNAVVNRVAEERAQRFLGRELEVLVEGPNP 476

Query: 423 KEKGKLVGRSPWLQSVVLNSKNHNI-GDIIKVRITDVKISTLYGEL 467
           ++  + VGR+   + +        + G ++ VR+  V   TLYG +
Sbjct: 477 RDPAQAVGRTRHNKLLYFAGDGEALRGQLVDVRVDRVHAYTLYGSM 522


>gi|257452434|ref|ZP_05617733.1| MIAB protein [Fusobacterium sp. 3_1_5R]
 gi|317058977|ref|ZP_07923462.1| adenosine tRNA methylthiotransferase [Fusobacterium sp. 3_1_5R]
 gi|313684653|gb|EFS21488.1| adenosine tRNA methylthiotransferase [Fusobacterium sp. 3_1_5R]
          Length = 435

 Score =  432 bits (1110), Expect = e-119,   Method: Composition-based stats.
 Identities = 161/447 (36%), Positives = 251/447 (56%), Gaps = 16/447 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++  V +YGCQMNV +S +M+ +F + GYE    + ++D I LNTC +RE AA ++Y  L
Sbjct: 2   KKATVITYGCQMNVNESAKMKKIFENLGYEITEDIRESDAIFLNTCTVREGAATQIYGKL 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           G +  +K          ++ V GC AQ +G+E+L++ P++++V+G Q   RLP+ +E   
Sbjct: 62  GELMQVKA-----DRGSIIGVTGCFAQEQGKELLKKFPVIDIVMGNQNIGRLPQAIENIE 116

Query: 145 F--GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
               K VV T++      E         +     TA + I  GC+ FCTFC+VPY RG E
Sbjct: 117 NQTEKHVVFTNH------EDDLPPRLDADFGSDQTASIAISYGCNNFCTFCIVPYVRGRE 170

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            S  L ++V +  + +  G  EI LLGQNVN++     +G+  TF+ LL  + +++G   
Sbjct: 171 RSVPLEEIVRDVDQYVKKGAKEIMLLGQNVNSYGHDFKNGD--TFAKLLTEICKVEGDFI 228

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+ + HPRD +D +I+     D +   LHLP+QSGS +ILK MNR +T  +Y  +  +I
Sbjct: 229 VRFVSPHPRDFTDDVIEVIAKEDKIAKCLHLPLQSGSSQILKRMNRGYTKEQYLALAHKI 288

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           +     +A+++D IVGFPGET++DF  T+++V +I Y  AF F YS R GT  + M EQ+
Sbjct: 289 QDKISGVALTTDIIVGFPGETEEDFLDTLEVVREINYDNAFMFMYSIRQGTRAATMKEQI 348

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVLN 441
            E++K ERL  L           +    G+ + VL+E   K+  + L GR+   + V+  
Sbjct: 349 PEDIKKERLQRLMDVQARCSYKESQKYQGKTVRVLVEGESKKNKEVLSGRTSTNKIVLFQ 408

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                 G  + V I + K  TLYG+LV
Sbjct: 409 GPISLKGSFVDVEIYECKTWTLYGKLV 435


>gi|301064673|ref|ZP_07205062.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [delta proteobacterium
           NaphS2]
 gi|300441215|gb|EFK05591.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [delta proteobacterium
           NaphS2]
          Length = 439

 Score =  432 bits (1110), Expect = e-119,   Method: Composition-based stats.
 Identities = 171/447 (38%), Positives = 266/447 (59%), Gaps = 8/447 (1%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + +RF +++ GCQMN YDS  +       G+     +  AD+I++NTC +R K  +K  S
Sbjct: 1   MNKRFHIQTMGCQMNEYDSDFLAQSLIKNGFLPEEQVHRADIILINTCAVRAKPEQKACS 60

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
           FLGR+ +LK        +L+V + GC+AQ +G+E++RR P+++ V+GP+   R+ E +E 
Sbjct: 61  FLGRMADLKEK----NPELIVGMIGCLAQMKGKELIRRFPLLDFVMGPRELERIVECIEG 116

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
               ++              +       NR  G   F++I EGC+ FC++C+VPY RG E
Sbjct: 117 IYKKRQRFVATALNGVPPSPVKCTGYFQNRTSG---FISIMEGCNNFCSYCIVPYVRGRE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
             R+   +++EA  LI  G+ EITLLGQNVN+      +     FS LLY L+E+  L+R
Sbjct: 174 FFRAPEDILEEAEYLISEGIREITLLGQNVNS-YVWKKNHNNWNFSSLLYELAELDHLLR 232

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LR+TTSHP+D SD L+     ++ L  ++HLP Q+GS+RILKSM R +T  +Y  II +I
Sbjct: 233 LRFTTSHPKDFSDELLACFAHIEKLAGHIHLPFQAGSNRILKSMRRGYTREQYLAIIRKI 292

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           ++ + DIAI+SD +VGFPGET++DF+ T+DL++++ +   FSFKYS R GTP + M E++
Sbjct: 293 KTCKEDIAITSDVMVGFPGETEEDFQFTLDLIEQVQFDSLFSFKYSDREGTPAAEMSEKI 352

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
           +E VK  RL  LQ       +  N   VG+ + VL+E   K+  +L GR+P  + V  + 
Sbjct: 353 NEKVKIARLQRLQDIQNGITLKKNQQLVGRQVTVLVEGASKKGEQLTGRTPSNKVVNFDG 412

Query: 443 KNHNIGDIIKVRITDVKISTLYGELVV 469
                G +++V I    +++L GE + 
Sbjct: 413 DVALAGRLVEVVIKASYVNSLKGETIT 439


>gi|282858916|ref|ZP_06268056.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella bivia
           JCVIHMP010]
 gi|282588298|gb|EFB93463.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella bivia
           JCVIHMP010]
          Length = 442

 Score =  432 bits (1110), Expect = e-119,   Method: Composition-based stats.
 Identities = 157/450 (34%), Positives = 257/450 (57%), Gaps = 15/450 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ ++++YGCQMNV DS  +  +    GY+     ++AD I LNTC IRE A  K+Y+ L
Sbjct: 2   KKLYIETYGCQMNVADSEVVASVMKMAGYDVCEKEEEADAIFLNTCSIRENAENKIYNRL 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             +   K      G DL++ V GC+A+   ++++      N+V GP +Y  LP+++ +  
Sbjct: 62  ETLHAEKRK----GRDLILGVLGCMAERVRDDLIENH-YANLVCGPDSYLNLPDMIAQCE 116

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G    D + S  + +  +     G NR  G   F++I  GC+ FC +C+VP+TRG E S
Sbjct: 117 NGNNACDIELSTTETYRNIIPQRIGGNRVSG---FVSIMRGCNNFCHYCIVPFTRGRERS 173

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC----TFSDLLYSLSEIKGL 260
           R +  ++ E + L   G  E+TLLGQNVN+  G   +G++     +F++LL  +++    
Sbjct: 174 RDVESILQEVQDLKGRGFREVTLLGQNVNS-YGLLPNGKRPENGTSFAELLRKVAQSVPN 232

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
           +R+R+TTS+P DM++ +++A  D   L  ++H P QSGS+ +LK MNR++T  EY   + 
Sbjct: 233 MRVRFTTSNPEDMTEDILQAIADEPNLCHHIHFPAQSGSNSVLKDMNRKYTREEYLDKVA 292

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN-ML 379
            IR + PD  +++D  VG+  E+ +D + T+DL+ ++G+  AF FKYS R GT  +  + 
Sbjct: 293 AIRRIIPDCGLTTDIFVGYHNESLEDHQQTLDLMREVGFDSAFMFKYSERPGTYAAKHLP 352

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSV 438
           + V E  K  RL  L     +     N    G+  ++LIE+ GK    +L+GR+P  ++V
Sbjct: 353 DNVSEEEKVRRLNELIHLQTQISAEMNKKDEGKEFDILIERFGKRSHDQLMGRTPQNKAV 412

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           V+   NH+IGD + VRI     +TL GE +
Sbjct: 413 VIPKGNHHIGDTVHVRIVSSSSATLIGEEI 442


>gi|229890687|sp|Q5FHD1|MIAB_EHRRG RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
          Length = 445

 Score =  432 bits (1110), Expect = e-119,   Method: Composition-based stats.
 Identities = 213/442 (48%), Positives = 315/442 (71%), Gaps = 11/442 (2%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
            ++KSYGCQMNVYDSL +E++    G+  VN + +AD+++LNTCHIREKAAEK+YS LGR
Sbjct: 4   LYIKSYGCQMNVYDSLIIENIIKPLGFSIVNELSEADIVILNTCHIREKAAEKLYSELGR 63

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF- 145
           IR ++ +      +L +VVAGCVAQAEG EI  R+P V++VVGPQ+ + LPEL+ +AR  
Sbjct: 64  IRKIQET-----KNLTIVVAGCVAQAEGTEIFTRAPFVDIVVGPQSIHTLPELIVKARKI 118

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            K++++ D+ V  KF+ +++ +   N+K  V+AF+++QEGC+KFC+FCVVPYTRG E SR
Sbjct: 119 KKQIINIDFPVISKFDAIAVEEYTKNQK--VSAFISVQEGCNKFCSFCVVPYTRGEEYSR 176

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           ++  +  EA  L D+G+ EITL+GQNVNA+ G    G +     L+  +++I  + R+ Y
Sbjct: 177 TVEAIFKEALILADSGIKEITLIGQNVNAYHG-TYKGNEWDLGRLIQHIAKISSIERIYY 235

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
           TTSHPRDM + L +AHG    L+P++HLPVQSGS++IL+ MNR+HTA EY  II  +R  
Sbjct: 236 TTSHPRDMHESLYEAHGIEKKLIPFIHLPVQSGSNKILRKMNRKHTAEEYINIIKTLRKH 295

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
           R DIA SSDFIVGFPGETD+DF  T+ L++++ ++QA+SFKYSPR GTP +    Q+ + 
Sbjct: 296 RSDIAYSSDFIVGFPGETDEDFENTIRLIEEVKFSQAYSFKYSPRPGTPSAEYTSQIPDE 355

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445
           +K++RL  LQ+ + +QQ+ FN   +G+   VL  K GK   +++G++P++QS  +N++N 
Sbjct: 356 IKSQRLTKLQELVHKQQLEFNKKMIGETHPVLFYKKGKFDNQIIGKTPYMQSCYINTENP 415

Query: 446 NI--GDIIKVRITDVKISTLYG 465
           ++    I+ ++ITD   + L G
Sbjct: 416 DLYYNKIVPIKITDAHKNHLTG 437


>gi|58616989|ref|YP_196188.1| hypothetical protein ERGA_CDS_02620 [Ehrlichia ruminantium str.
           Gardel]
 gi|58416601|emb|CAI27714.1| Conserved hypothetical protein [Ehrlichia ruminantium str. Gardel]
          Length = 450

 Score =  432 bits (1110), Expect = e-119,   Method: Composition-based stats.
 Identities = 213/442 (48%), Positives = 315/442 (71%), Gaps = 11/442 (2%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
            ++KSYGCQMNVYDSL +E++    G+  VN + +AD+++LNTCHIREKAAEK+YS LGR
Sbjct: 9   LYIKSYGCQMNVYDSLIIENIIKPLGFSIVNELSEADIVILNTCHIREKAAEKLYSELGR 68

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF- 145
           IR ++ +      +L +VVAGCVAQAEG EI  R+P V++VVGPQ+ + LPEL+ +AR  
Sbjct: 69  IRKIQET-----KNLTIVVAGCVAQAEGTEIFTRAPFVDIVVGPQSIHTLPELIVKARKI 123

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            K++++ D+ V  KF+ +++ +   N+K  V+AF+++QEGC+KFC+FCVVPYTRG E SR
Sbjct: 124 KKQIINIDFPVISKFDAIAVEEYTKNQK--VSAFISVQEGCNKFCSFCVVPYTRGEEYSR 181

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           ++  +  EA  L D+G+ EITL+GQNVNA+ G    G +     L+  +++I  + R+ Y
Sbjct: 182 TVEAIFKEALILADSGIKEITLIGQNVNAYHG-TYKGNEWDLGRLIQHIAKISSIERIYY 240

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
           TTSHPRDM + L +AHG    L+P++HLPVQSGS++IL+ MNR+HTA EY  II  +R  
Sbjct: 241 TTSHPRDMHESLYEAHGIEKKLIPFIHLPVQSGSNKILRKMNRKHTAEEYINIIKTLRKH 300

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
           R DIA SSDFIVGFPGETD+DF  T+ L++++ ++QA+SFKYSPR GTP +    Q+ + 
Sbjct: 301 RSDIAYSSDFIVGFPGETDEDFENTIRLIEEVKFSQAYSFKYSPRPGTPSAEYTSQIPDE 360

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445
           +K++RL  LQ+ + +QQ+ FN   +G+   VL  K GK   +++G++P++QS  +N++N 
Sbjct: 361 IKSQRLTKLQELVHKQQLEFNKKMIGETHPVLFYKKGKFDNQIIGKTPYMQSCYINTENP 420

Query: 446 NI--GDIIKVRITDVKISTLYG 465
           ++    I+ ++ITD   + L G
Sbjct: 421 DLYYNKIVPIKITDAHKNHLTG 442


>gi|19553154|ref|NP_601156.1| (dimethylallyl)adenosine tRNA methylthiotransferase
           [Corynebacterium glutamicum ATCC 13032]
 gi|62390789|ref|YP_226191.1| (dimethylallyl)adenosine tRNA methylthiotransferase
           [Corynebacterium glutamicum ATCC 13032]
 gi|41326127|emb|CAF20290.1| TRNA METHYLTHIOTRANSFERASE [Corynebacterium glutamicum ATCC 13032]
          Length = 526

 Score =  432 bits (1110), Expect = e-119,   Method: Composition-based stats.
 Identities = 157/456 (34%), Positives = 250/456 (54%), Gaps = 23/456 (5%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + + VK+YGCQMNV+DS R+  +    GY         DL+V NTC +RE A  ++Y  L
Sbjct: 28  RTYEVKTYGCQMNVHDSERLSGLLEEAGYVAAPEDTTPDLVVFNTCAVRENADMRLYGTL 87

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           G +R++K         + + V GC+AQ + + +++++P V+VV G      LP LL+RA 
Sbjct: 88  GNLRSVKEK----NPGMQIAVGGCLAQKDKDTVVKKAPWVDVVFGTHNIGSLPTLLQRAE 143

Query: 145 FGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
              +  V+   S+E     LS       R+     ++++  GC+  CTFC+VP  RG E 
Sbjct: 144 HNAQAEVEIVDSLEQFPSVLS-----AKRESAYAGWVSVSVGCNNTCTFCIVPSLRGKEQ 198

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE----KCTFSDLLYSLSEIKG 259
            R    ++ E + L+D GV E+TLLGQNVNA+    +D E    +  FS LL +  EI+G
Sbjct: 199 DRRPGDILAEVQALVDQGVTEVTLLGQNVNAYGVNFVDPELERDRSAFSKLLRACGEIEG 258

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           L R+R+T+ HP + +  +I A  +   + P LH+P+QSGSD++LK M R + + ++  I+
Sbjct: 259 LERVRFTSPHPAEFTSDVIDAMAETPNICPQLHMPLQSGSDKVLKEMRRSYRSKKFLSIL 318

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
           D +R+  P  +I++D IVGFPGET++DF+AT+D+V K  +  A++F+YSPR GTP +   
Sbjct: 319 DEVRAKIPHASITTDIIVGFPGETEEDFQATLDVVKKARFTSAYTFQYSPRPGTPAAEYE 378

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG----KLVGRSPWL 435
            Q+ + V  ER   L     +     N   +G  +E+L++  G  K     ++ GR+   
Sbjct: 379 NQLPKEVVQERYERLMVVQEQVCEEENQKLIGTTVELLVQAGGGRKNDATKRMSGRARDG 438

Query: 436 QSVVL-----NSKNHNIGDIIKVRITDVKISTLYGE 466
           + V              GD + V +T+ K   L  +
Sbjct: 439 RLVHFAPEGDIDGEIRPGDFVTVTVTEAKPFFLIAD 474


>gi|291566663|dbj|BAI88935.1| tRNA-i(6)A37 modification enzyme MiaB [Arthrospira platensis
           NIES-39]
          Length = 452

 Score =  431 bits (1109), Expect = e-118,   Method: Composition-based stats.
 Identities = 169/453 (37%), Positives = 264/453 (58%), Gaps = 19/453 (4%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+ + + ++GCQMN  DS RM  +    G   V   + AD+++ NTC IR+ A +KVYS+
Sbjct: 5   PRHYHITTFGCQMNKADSERMAGILDEMGLTFVEDPNQADIVLYNTCTIRDNAEQKVYSY 64

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR    K        +L ++VAGCVAQ EGE +LRR P +++V+GPQ   RL +LLE+ 
Sbjct: 65  LGRQAKRKQE----NPNLTLIVAGCVAQQEGEALLRRVPELDLVMGPQHANRLQDLLEQV 120

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             G +VV T+    +  E ++       R   +TA++ +  GC++ CT+CVVP  RG E 
Sbjct: 121 FEGSQVVATE--PINIVEDITKPR----RDSNITAWVNVIYGCNERCTYCVVPNVRGTEQ 174

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG------EKCTFSDLLYSLSEI 257
           SR+   +  E  +L   G  E+TLLGQN++A  G+ L G       + T +DLLY + +I
Sbjct: 175 SRTPEAIRAEMEELARAGYKEVTLLGQNIDA-YGRDLPGSTPDGRHQHTLTDLLYYVHDI 233

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
            G+ R+R+ TSHPR  ++ LI+A  +L  +  + H+P QSG + +L++M R +T  +YR+
Sbjct: 234 PGIERIRFATSHPRYFTERLIRACAELPKVCEHFHIPFQSGDNDVLRAMARGYTHEKYRR 293

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
           II+ IR   PD +IS+D IVGFPGET+  F  T+ LVD I +    +  YSPR GT  + 
Sbjct: 294 IINTIREYIPDASISADAIVGFPGETEAQFENTLKLVDDIAFDLLNTAAYSPRPGTGAAL 353

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQ 436
              Q+ E VKA+RL  L + +  + +  ++    +I EVL+E    K+  +++GR+   +
Sbjct: 354 WENQLSEEVKADRLQRLNRLVNVKAMERSERYRDRIEEVLVEGTNPKDPSQVMGRTRGNR 413

Query: 437 SVVLNSK-NHNIGDIIKVRITDVKISTLYGELV 468
                       G+++KV+I +V+  +L GE +
Sbjct: 414 LTFFKGNLAELSGELVKVKIIEVRAFSLTGEPI 446


>gi|325672731|ref|ZP_08152427.1| tRNA-I(6)A37 thiotransferase [Rhodococcus equi ATCC 33707]
 gi|325556608|gb|EGD26274.1| tRNA-I(6)A37 thiotransferase [Rhodococcus equi ATCC 33707]
          Length = 505

 Score =  431 bits (1109), Expect = e-118,   Method: Composition-based stats.
 Identities = 158/464 (34%), Positives = 253/464 (54%), Gaps = 22/464 (4%)

Query: 16  QIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREK 75
           + +DQ    + + V++YGCQMNV+DS R+  +    GY +    + ADL+V NTC +RE 
Sbjct: 2   ETIDQN-AGRSYEVRTYGCQMNVHDSERLSGLLEDAGYTKAVPGEQADLVVFNTCAVREN 60

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135
           A  K+Y  L  +  +K  R      + + V GC+AQ + + +++++P V+VV G      
Sbjct: 61  ADNKLYGNLSHLAPVKEER----PGMQIAVGGCLAQKDRDTVVKKAPWVDVVFGTHNIGS 116

Query: 136 LPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
           LP LLERAR  ++         + F           R+     +++I  GC+  CTFC+V
Sbjct: 117 LPALLERARHNEQAQVEILESLEAF----PSTLPAKRESAYAGWVSISVGCNNTCTFCIV 172

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT----FSDLL 251
           P  RG E+ R    ++ E + L++ GV E+TLLGQNVN++     D E       F+ LL
Sbjct: 173 PSLRGKEVDRRPGDILAEVQALVNEGVLEVTLLGQNVNSYGVSFADPELPRDRGAFAKLL 232

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
            +  +I GL R+R+T+ HP + +D +I+A      + P LH+P+QSGSDR+LK+M R + 
Sbjct: 233 SACGQIDGLERVRFTSPHPAEFTDDVIEAMATTPNVCPQLHMPLQSGSDRVLKAMRRSYR 292

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
           + ++  II+++R+  P  AI++D IVGFPGET++DF+AT+D+V +  +  AF+F+YS R 
Sbjct: 293 SAKFLGIIEKVRAAMPHAAITTDIIVGFPGETEEDFQATLDVVRQARFTSAFTFQYSKRP 352

Query: 372 GTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE----KHGKEKGK 427
           GTP + M  Q+ + V  ER   L     E  +  N   VG  +E+L+     +   E  +
Sbjct: 353 GTPAAEMDGQLPKAVVQERYDRLIALQEEITLEENRKLVGTEVELLVTAGDGRKNAETAR 412

Query: 428 LVGRSPWLQSVVLN-----SKNHNIGDIIKVRITDVKISTLYGE 466
           + GR+   + V          +   GD+I V +T      L  +
Sbjct: 413 MSGRARDGRLVHFKPEGNLDGDLRPGDVITVVVTSAAPHHLVAD 456


>gi|126434730|ref|YP_001070421.1| RNA modification protein [Mycobacterium sp. JLS]
 gi|229890567|sp|A3PYF3|MIAB_MYCSJ RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|126234530|gb|ABN97930.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Mycobacterium sp. JLS]
          Length = 526

 Score =  431 bits (1109), Expect = e-118,   Method: Composition-based stats.
 Identities = 170/489 (34%), Positives = 261/489 (53%), Gaps = 44/489 (8%)

Query: 13  MVSQIVDQ-CIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCH 71
           M  Q  +    V + + V++YGCQMNV+DS R+  +    GY R     DAD++V NTC 
Sbjct: 1   MTQQAANALPPVARTYQVRTYGCQMNVHDSERLAGLLEDAGYRRAADGADADVVVFNTCA 60

Query: 72  IREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ 131
           +RE A  K+Y  L  +   K S       + + V GC+AQ + + +LRR+P V+VV G  
Sbjct: 61  VRENADNKLYGNLSHLAPRKRSE----PQMQIAVGGCLAQKDRDAVLRRAPWVDVVFGTH 116

Query: 132 TYYRLPELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190
               LP LLERAR  +   V+   ++++    L        R+     +++I  GC+  C
Sbjct: 117 NIGSLPTLLERARHNRAAQVEIAEALQEFPSTLPAA-----RESAYAGWVSISVGCNNTC 171

Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT---- 246
           TFC+VP  RG E+ R    V+ E + L+D GV E+TLLGQNVNA+       E+      
Sbjct: 172 TFCIVPSLRGKEVDRRPGDVLAEIQTLVDQGVLEVTLLGQNVNAYGVSFAADERLREDPR 231

Query: 247 ------------FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP 294
                       F++LL +   I GL R+R+T+ HP + +D +I+A  +   + P LH+P
Sbjct: 232 MWQSAPHRNRGAFAELLRACGRIDGLERVRFTSPHPAEFTDDVIEAMAETPNVCPALHMP 291

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           +QSGSDRIL++M R + A +Y  IIDR+R+  PD AI++D IVGFPGET++DF+AT+D+V
Sbjct: 292 LQSGSDRILRAMRRSYRAEKYLGIIDRVRAAIPDAAITTDLIVGFPGETEEDFQATLDVV 351

Query: 355 DKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQII 414
               ++ AF+F+YS R GTP ++M  Q+ + V +ER   L +      +  N A VG+ +
Sbjct: 352 AASRFSSAFTFQYSKRPGTPAADMPGQLPKAVVSERYQRLIELQERISLEENQAQVGRTL 411

Query: 415 EVLI-EKHGKEK---GKLVGRSPWLQSVVLNSKNH-------------NIGDIIKVRITD 457
           E+L+    G++     +L GR+   + V                      GD++   +T 
Sbjct: 412 ELLVATGEGRKDAATARLSGRARDGRLVHFAPGAAADEPLARRAFDQVRPGDVVTTTVTG 471

Query: 458 VKISTLYGE 466
                L  +
Sbjct: 472 AAPHHLIAD 480


>gi|254495105|ref|ZP_05108029.1| tRNA-i(6)A37 modification enzyme MiaB [Polaribacter sp. MED152]
 gi|85819455|gb|EAQ40612.1| tRNA-i(6)A37 modification enzyme MiaB [Polaribacter sp. MED152]
          Length = 484

 Score =  431 bits (1109), Expect = e-118,   Method: Composition-based stats.
 Identities = 169/459 (36%), Positives = 257/459 (55%), Gaps = 22/459 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F++SYGCQMN+ DS  +  +   +GY     +++ADL+++NTC IREKA   V   L
Sbjct: 27  KKLFIESYGCQMNMNDSEIVAAILDKEGYNTTQILEEADLVLVNTCSIREKAETTVRRRL 86

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            +   +K         + V V GC+A+   E+ L    IV++VVGP  Y  LP LLE   
Sbjct: 87  QKYNAVKQ----VNKKMKVGVLGCMAERLKEKFLEEEKIVDLVVGPDAYKDLPNLLEEVY 142

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G+  V+   S E+ +  +S V        GV+AF++I  GCD  CTFCVVP+TRG E S
Sbjct: 143 EGRDAVNVILSKEETYGDISPVRLN---SNGVSAFVSITRGCDNMCTFCVVPFTRGRERS 199

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNA--WRGKGL--DGEKCT---------FSDLL 251
           R    +++E ++++D    EITLLGQNV++  W G GL  D +K +         F+ LL
Sbjct: 200 RDPKSILEEIQQMVDKNYKEITLLGQNVDSFLWYGGGLKKDFKKASEMAQATAVDFAQLL 259

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
              +      R R++TS+P+DMS  +I        +  Y+HLPVQSGS+ +LK+MNR+HT
Sbjct: 260 DMCATQFPKTRFRFSTSNPQDMSLDVIHVMAKHRNICKYIHLPVQSGSNAMLKAMNRQHT 319

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
             EY +++D I  + P++A+S D IVGF GET+ D + T+DL++ + Y   F F YS R 
Sbjct: 320 REEYMELVDNIFKIVPEMALSQDMIVGFCGETEQDHQDTLDLMEYVKYDFGFMFAYSERP 379

Query: 372 GTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLV 429
           GT     M + V E VK  RL  +    ++  +      +G++ EVLIE   K+   +  
Sbjct: 380 GTLAGKKMEDDVPEAVKKRRLTEVIDLQQKHALYRTQQHLGKVEEVLIEGTSKKNPNEWK 439

Query: 430 GRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           GR+     +V   +++ +GD + V++ D   +TL G  V
Sbjct: 440 GRNTQNTVIVFPKEHYKLGDFVNVKVEDCTSATLKGTAV 478


>gi|323143878|ref|ZP_08078542.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Succinatimonas hippei YIT
           12066]
 gi|322416350|gb|EFY07020.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Succinatimonas hippei YIT
           12066]
          Length = 452

 Score =  431 bits (1109), Expect = e-118,   Method: Composition-based stats.
 Identities = 182/444 (40%), Positives = 271/444 (61%), Gaps = 11/444 (2%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           F V  +GCQMNVYD+ R+ D+  S G+   +  ++AD+IVL TC +R KA +KV++ +  
Sbjct: 17  FHVAVWGCQMNVYDADRIRDLLSSAGFMETSLPNNADIIVLVTCAVRAKAEDKVFNQIAS 76

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-ERARF 145
            +    ++     + ++ + GCV     EEI+     VN+V GP+T + LPE++ E    
Sbjct: 77  WK----AKGVINANTVIALGGCVGSELAEEIINFDKNVNIVFGPRTVHHLPEMIREFLDT 132

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G  VV+      +KF+ L         +RG +AF+TI EGC   C++C+VPYTRG E SR
Sbjct: 133 GTPVVNVKGDALEKFDSLP-----NPGRRGPSAFVTIMEGCSNKCSYCIVPYTRGEEESR 187

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
               +++E +  I NGV EI LLGQNVN++RG   +G  C+FS+LLY ++ + G+ RLR+
Sbjct: 188 PEKDILEEIKIHIANGVKEIHLLGQNVNSYRGISDNGFTCSFSELLYEIAAVNGVERLRF 247

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
           TTS+P + +D +++A  DLDV+   +H+PVQSGSDRIL+ M RR+T+  YR++I ++R  
Sbjct: 248 TTSNPMEFTDDIVQAFADLDVIADAVHIPVQSGSDRILELMRRRYTSDSYRELIAKLRKA 307

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
           RP I +S+D IVGFPGETDDDF  TM LVD I + Q+FSF YS R GTP + + + +   
Sbjct: 308 RPQIHVSTDIIVGFPGETDDDFAKTMSLVDDIKFDQSFSFIYSKRPGTPAAVLEDPISAE 367

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNSKN 444
           VK  RL  LQ +L E  ++++   +     VL+E   ++   +L GR+   + VV     
Sbjct: 368 VKKSRLYTLQARLEEYALTYSQKMLNTRQRVLVEGVSRKDANELKGRASNNRIVVFEGST 427

Query: 445 HNIGDIIKVRITDVKISTLYGELV 468
             IG +  V I  V   TL G+L+
Sbjct: 428 DLIGSMADVDIIKVMSHTLKGQLI 451


>gi|238063462|ref|ZP_04608171.1| RNA modification protein [Micromonospora sp. ATCC 39149]
 gi|237885273|gb|EEP74101.1| RNA modification protein [Micromonospora sp. ATCC 39149]
          Length = 511

 Score =  431 bits (1109), Expect = e-118,   Method: Composition-based stats.
 Identities = 166/475 (34%), Positives = 254/475 (53%), Gaps = 33/475 (6%)

Query: 17  IVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDD-ADLIVLNTCHIREK 75
                  P+ + V++YGCQMNV+DS R+  +    GY R    DD  D++V NTC +RE 
Sbjct: 2   TTAAAGSPRTYQVRTYGCQMNVHDSERISGLLEQAGYVRAAEADDNPDVVVFNTCAVREN 61

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135
           A  ++Y  LG +R +K+        + + V GC+AQ +  +I+R++P V+VV G      
Sbjct: 62  ADNRLYGNLGHLRPVKDKH----PGMQIAVGGCLAQKDRGDIVRKAPWVDVVFGTHNIGS 117

Query: 136 LPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
           LP LLERAR             D F           R+     +++I  GC+  CTFC+V
Sbjct: 118 LPALLERARHNAAAEVEILESLDVFPSTLPTR----RESTYAGWVSISVGCNNTCTFCIV 173

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
           P  RG E  R    V+ E R L+D+GV E+TLLGQNVN++  +   G++  F  LL +  
Sbjct: 174 PALRGREKDRRPGDVLAEVRALVDSGVLEVTLLGQNVNSYGVEF--GDRYAFGKLLRACG 231

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
           EI GL R+R+T+ HP+D +D +I A  +   +   LH+P+QSGSD +L++M R + +  Y
Sbjct: 232 EIDGLERVRFTSPHPKDFTDDVIAAMAETPNVCHSLHMPLQSGSDDVLRAMRRSYRSERY 291

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
             II+R+R+  PD AI++D IVGFPGET+ DF+ T+D+V +  ++ AF+F+YS R GTP 
Sbjct: 292 LGIIERVRAAMPDAAITTDIIVGFPGETEADFQRTLDVVREARFSSAFTFQYSKRPGTPA 351

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI---EK-HGKEKGKLVGR 431
           + M +Q+ + V  ER   L   + E   + N   +G+ +EVL+   E    +  G++ GR
Sbjct: 352 ATMPDQLPKQVVQERYERLIATVEEITWAENRKLIGETVEVLVAVGEGRKDERTGRMSGR 411

Query: 432 SPWLQSVVLN----------------SKNHNIGDIIKVRITDVKISTLY--GELV 468
           +   + V                   +     GDI+   +T      L   GE +
Sbjct: 412 ARDGRLVHFATGALGASGRPGDAGFLAGRIRPGDIVHTTVTYAAPHHLNADGEPL 466


>gi|154509070|ref|ZP_02044712.1| hypothetical protein ACTODO_01587 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798704|gb|EDN81124.1| hypothetical protein ACTODO_01587 [Actinomyces odontolyticus ATCC
           17982]
          Length = 512

 Score =  431 bits (1109), Expect = e-118,   Method: Composition-based stats.
 Identities = 160/478 (33%), Positives = 262/478 (54%), Gaps = 35/478 (7%)

Query: 13  MVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDA---------- 62
           M +   D   +P+ + V++ GCQMN +DS RM  +    G   V  + +A          
Sbjct: 1   MNTMTQDGTTLPRTYAVRTLGCQMNEHDSERMAGLLEQAGLVPVEQVPEAAARATDAGDM 60

Query: 63  --DLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRR 120
             D+IV+NTC +RE AA +++  LG++ ++K +R      + + V GC+AQ   + I+ +
Sbjct: 61  GADVIVINTCSVRENAATRLFGNLGQLASVKRAR----PGMQIAVGGCLAQQMRDGIVEK 116

Query: 121 SPIVNVVVGPQTYYRLPELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAF 179
           +P V+ V G      LP LL RA   +   V+ + S++     L       +R+    A+
Sbjct: 117 APWVDAVFGTHNIDVLPALLRRAEHNRAAAVEIEESLKVFPSTLPT-----HRESAYAAW 171

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
           ++I  GC+  CTFC+VP+ RG E  R    ++ E   +   G  E+TLLGQNVN+  G G
Sbjct: 172 VSISVGCNNTCTFCIVPHLRGKERDRRPGDILAEVEAVASQGAIEVTLLGQNVNS-YGVG 230

Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
             GE+  F+DLL ++  ++G+ R+R+T+ HP   +D +I A      +MP LH+P+QSGS
Sbjct: 231 F-GERGAFADLLRAVGRVEGIERVRFTSPHPAAFTDDVIAAMAQTPTVMPSLHMPLQSGS 289

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
           D IL+ M R +    +  I++R+R+  P+ AI++D IVGFPGET++DF+AT+++V++  +
Sbjct: 290 DAILRQMRRSYRRERFMGILERVRAAIPEAAITTDIIVGFPGETEEDFQATLEVVEQARF 349

Query: 360 AQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI- 418
           + AF+F YSPR GTP ++  +QV ++V  ER   L K         N A  G  +EVL+ 
Sbjct: 350 SSAFTFLYSPRPGTPAADREDQVPDDVALERYQRLIKLQERICAEDNAALAGTEVEVLVS 409

Query: 419 EKHGKEKG---KLVGRSPWLQSVVL-------NSKNHNIGDIIKVRITDVKISTLYGE 466
           E  G++ G   ++ GR+   + V +        +     GD+I+  +T      L  +
Sbjct: 410 EGDGRKDGATHRISGRARDNRLVHVALPEGMAEADRPRPGDMIRATVTYGAPHHLIAD 467


>gi|291166609|gb|EFE28655.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Filifactor alocis ATCC
           35896]
          Length = 483

 Score =  431 bits (1109), Expect = e-118,   Method: Composition-based stats.
 Identities = 178/449 (39%), Positives = 272/449 (60%), Gaps = 17/449 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           ++ + ++GCQMN +DS  +  MF   GYE  +  +DAD+I+ NTC IRE A  KVY  L 
Sbjct: 39  KYMITTWGCQMNEHDSENLSGMFEYMGYELTDREEDADVILYNTCAIRENAELKVYGNLS 98

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERA 143
            ++++K +R     D+++ V GC+ Q     EE+ ++   V++V G    Y+ PE+L + 
Sbjct: 99  LLKHIKENR----DDMIIGVCGCMMQQPHVVEELKKKYSHVDIVFGTHNIYQFPEMLYQQ 154

Query: 144 RFGK--RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
                 +++D         E L        RK  V +F+ I  GC+ FCT+C+VPYTRG 
Sbjct: 155 LTSNAGQLIDVWDIDGQIIEGLPTT-----RKFDVKSFVNIMYGCNNFCTYCIVPYTRGR 209

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR    ++DE R L + G+ EITLLGQNVN+  GK L+ +  TF+DLL  +++I G+ 
Sbjct: 210 ERSREPKDILDEIRFLANEGIKEITLLGQNVNS-YGKTLE-QNYTFADLLRDVNDIDGIE 267

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+ +SHP+D+SD LI A  +L  +   LHLP+QSGS R+LK MNR ++  +Y  ++D+
Sbjct: 268 RIRFMSSHPKDLSDELIDAMAELPKVCESLHLPIQSGSTRLLKKMNRHYSKEDYYLLVDK 327

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R+  P+I  ++D +VGFPGET++DF  TM++V+++ Y  AF+F YS R GTP   M +Q
Sbjct: 328 LRAKIPNIGFTTDIMVGFPGETEEDFLETMEVVERVQYDSAFTFLYSVRKGTPAEKMEDQ 387

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVL 440
           V E VK ER   L + +       N A  G+++EVL+E   K ++ KL GR+   + V  
Sbjct: 388 VPEEVKKERFQRLLEPVNRIAAEKNHAYAGKVVEVLVESVSKRDETKLTGRTRENKLVNF 447

Query: 441 NSKN-HNIGDIIKVRITDVKISTLYGELV 468
           +      IG I+ V+IT+ K  +L GE+V
Sbjct: 448 DRPEGDWIGKIVHVKITNPKSFSLNGEMV 476


>gi|87310113|ref|ZP_01092245.1| probable MiaB protein-putative tRNA-thiotransferase
           [Blastopirellula marina DSM 3645]
 gi|87287103|gb|EAQ79005.1| probable MiaB protein-putative tRNA-thiotransferase
           [Blastopirellula marina DSM 3645]
          Length = 475

 Score =  431 bits (1109), Expect = e-118,   Method: Composition-based stats.
 Identities = 173/468 (36%), Positives = 265/468 (56%), Gaps = 25/468 (5%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           +P+R ++ + GCQMN+ DS  +      QGYE     ++AD ++ NTC +RE+A  K YS
Sbjct: 1   MPKRLYIDTVGCQMNMLDSELVVASLRQQGYELTTKPEEADTLLFNTCSVREQAENKTYS 60

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            LG +R+LK S      + ++ V GC+AQ   ++I +R+P V++VVGP   +++P L+++
Sbjct: 61  HLGVLRDLKASH----PEKIIGVMGCMAQNHQKKIFQRAPYVDLVVGPGQLHQIPSLIDK 116

Query: 143 ARFGK-RVVDTDYSVED--------KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC 193
              G+ R ++      D          E    +     R     A++ IQ GCDKFCT+C
Sbjct: 117 VAAGEGRQIEVSLGRRDGSRVEIARSHESFDPLRDPEMRPTPFQAYVRIQIGCDKFCTYC 176

Query: 194 VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS 253
           +VP  RG E  R    ++ E R L D G  EITL+GQ VN++RG+   G+    +DLL +
Sbjct: 177 IVPSVRGPEQGRRPEDILAETRHLADQGTVEITLVGQTVNSYRGQDAAGKSWNLADLLAA 236

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
           + EI G+ R+++ T++P+DM+D L+ A  +LD + PYLH+P QSGS+ +LK M R +T  
Sbjct: 237 IHEIDGIRRIKFVTNYPKDMTDELLTAVRELDKVSPYLHVPAQSGSNDMLKRMKRGYTVE 296

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
           +YR ++ RIR   P  A+SSDFIVGF GET+ +F+ T+DLV++  +  +F FKYS R GT
Sbjct: 297 QYRDMMRRIREGVPGAAVSSDFIVGFCGETEAEFQMTVDLVEECRFKNSFIFKYSEREGT 356

Query: 374 PGSNM-LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG------ 426
            G+ + L+ V   VK ER   L +      +  N   +G  + VL+E   K         
Sbjct: 357 RGAELFLDDVPFTVKQERNNTLLEIQNRISLEDNQKQIGNTLNVLVEGISKAAAKKEDAD 416

Query: 427 -----KLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
                +L GR+   + VV +     IG I+ V I D    TL+GE++ 
Sbjct: 417 DSPVVQLTGRTHCDRIVVFDGNRRQIGQILPVAIYDSASHTLFGEVIT 464


>gi|300868939|ref|ZP_07113544.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Oscillatoria sp. PCC 6506]
 gi|300333062|emb|CBN58736.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Oscillatoria sp. PCC 6506]
          Length = 452

 Score =  431 bits (1108), Expect = e-118,   Method: Composition-based stats.
 Identities = 178/455 (39%), Positives = 267/455 (58%), Gaps = 19/455 (4%)

Query: 21  CIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKV 80
              P+R+ + ++GCQMN  DS RM  +    G+E     ++A LI+ NTC IR+ A  KV
Sbjct: 2   TATPRRYHITTFGCQMNKADSERMAGILEDMGFEWSEDPNEASLILYNTCSIRDSAEHKV 61

Query: 81  YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140
           YS+LGR    +  R +   +L ++VAGCVAQ EGE +LRR P +++V+GPQ   RL +LL
Sbjct: 62  YSYLGR----QAGRKRVEPELTLIVAGCVAQQEGEALLRRVPELDLVMGPQHANRLQDLL 117

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           E+   G +VV TD     +            R   VTA++ +  GC++ CT+CVVP  RG
Sbjct: 118 EQVFDGNQVVATDAVHIMEDITKP------RRDSKVTAWVNVIYGCNERCTYCVVPNVRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK------CTFSDLLYSL 254
           IE SR+   +  E  +L   G  E+TLLGQN++A  G+ L G K       T +DLLY +
Sbjct: 172 IEQSRTPKAIRAEMEELGRQGYKEVTLLGQNIDA-YGRDLPGTKPDGSNQYTLTDLLYYV 230

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
           S++ G+ R+R+ TSHPR  ++ LIKA  +L  +  + H+P QSG + ILK+M R +T  +
Sbjct: 231 SDVPGIERIRFATSHPRYFTERLIKACAELPQVCEHFHIPFQSGDNDILKAMARGYTQEK 290

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
           YR+II+ IR   PD +IS+D IVGFPGE++  F  T++LV  + +    +  YSPR GTP
Sbjct: 291 YRRIIETIRQYMPDASISADAIVGFPGESEAQFEKTLNLVVDMRFDLVNTAAYSPRPGTP 350

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSP 433
            +    Q+ E VKA+RL  L   + +  +  +   +G+I EVL+E    K+  +++GR  
Sbjct: 351 AALWDTQLSEEVKADRLQRLNHVVTQTAMERSQRYLGRIEEVLVEDQNQKDATQVMGRGR 410

Query: 434 WLQSVVLNSK-NHNIGDIIKVRITDVKISTLYGEL 467
             +   L        G +++V+ITDV+  +L G+L
Sbjct: 411 GNRLTFLRGNIEELRGQLVQVKITDVRAFSLTGDL 445


>gi|227833318|ref|YP_002835025.1| 2-methylthioadenine synthetase [Corynebacterium aurimucosum ATCC
           700975]
 gi|227454334|gb|ACP33087.1| 2-methylthioadenine synthetase [Corynebacterium aurimucosum ATCC
           700975]
          Length = 520

 Score =  431 bits (1108), Expect = e-118,   Method: Composition-based stats.
 Identities = 158/473 (33%), Positives = 247/473 (52%), Gaps = 27/473 (5%)

Query: 11  AHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC 70
             + S +++    P+ + V+++GCQMNV+DS R+  +    GY    +  + DLIV NTC
Sbjct: 11  PPVNSPVINPQ--PRTYEVRTFGCQMNVHDSERISGLLEEAGYSAAPNGTEPDLIVFNTC 68

Query: 71  HIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGP 130
            +RE A +++Y  LG ++  K +       + + V GC+AQ + + +L  +P V+ V G 
Sbjct: 69  AVRENADKRLYGTLGALKKTKENH----PGMQIAVGGCLAQKDKDTVLDHAPWVDAVFGT 124

Query: 131 QTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190
                LP LLERAR             + F  +        R+     ++++  GC+  C
Sbjct: 125 HNMAALPALLERARHNDEAQVEIVDALEAFPSVLPA----KRESAYAGWVSVSVGCNNTC 180

Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT---- 246
           TFC+VP  RG E  R    ++ E + L+D GV E+TLLGQNVNA+     D +       
Sbjct: 181 TFCIVPSLRGKEEDRRPGDILAEVQALVDQGVSEVTLLGQNVNAYGVNFADPDLPRDRFA 240

Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306
           FS LL  + +I+GL RLR+T+ HP + +  +I A  +   + P LH+P+QSGSD++LK M
Sbjct: 241 FSKLLREVGKIEGLERLRFTSPHPAEFTSDVIDAMAETPAVCPQLHMPLQSGSDKVLKDM 300

Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
            R +   ++  I+D +R   P  AI++D IVGFPGET++DF AT+++V +  +A AF+F+
Sbjct: 301 RRSYRTKKFLGILDEVREKMPHAAITTDIIVGFPGETEEDFEATLEVVRRARFASAFTFQ 360

Query: 367 YSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI--EK--HG 422
           YSPR GTP + M  Q+ + V  ER   L       Q   N   VG  +E+L+  E     
Sbjct: 361 YSPRPGTPAAEMENQIPKEVVQERFERLVALQDSIQAEENAKLVGTDVELLVQAEGGRKS 420

Query: 423 KEKGKLVGRSPWLQSVVL---------NSKNHNIGDIIKVRITDVKISTLYGE 466
            E  +L GR+   + V            S     GD++   +T+     L  +
Sbjct: 421 AETHRLTGRARDGRLVHFAPVDPAGKDISAEIRPGDVVHTTVTEAGSFFLVAD 473


>gi|81760370|sp|Q8NP67|MIAB_CORGL RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|21324719|dbj|BAB99342.1| 2-methylthioadenine synthetase [Corynebacterium glutamicum ATCC
           13032]
          Length = 522

 Score =  431 bits (1108), Expect = e-118,   Method: Composition-based stats.
 Identities = 157/456 (34%), Positives = 250/456 (54%), Gaps = 23/456 (5%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + + VK+YGCQMNV+DS R+  +    GY         DL+V NTC +RE A  ++Y  L
Sbjct: 24  RTYEVKTYGCQMNVHDSERLSGLLEEAGYVAAPEDTTPDLVVFNTCAVRENADMRLYGTL 83

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           G +R++K         + + V GC+AQ + + +++++P V+VV G      LP LL+RA 
Sbjct: 84  GNLRSVKEK----NPGMQIAVGGCLAQKDKDTVVKKAPWVDVVFGTHNIGSLPTLLQRAE 139

Query: 145 FGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
              +  V+   S+E     LS       R+     ++++  GC+  CTFC+VP  RG E 
Sbjct: 140 HNAQAEVEIVDSLEQFPSVLS-----AKRESAYAGWVSVSVGCNNTCTFCIVPSLRGKEQ 194

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE----KCTFSDLLYSLSEIKG 259
            R    ++ E + L+D GV E+TLLGQNVNA+    +D E    +  FS LL +  EI+G
Sbjct: 195 DRRPGDILAEVQALVDQGVTEVTLLGQNVNAYGVNFVDPELERDRSAFSKLLRACGEIEG 254

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           L R+R+T+ HP + +  +I A  +   + P LH+P+QSGSD++LK M R + + ++  I+
Sbjct: 255 LERVRFTSPHPAEFTSDVIDAMAETPNICPQLHMPLQSGSDKVLKEMRRSYRSKKFLSIL 314

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
           D +R+  P  +I++D IVGFPGET++DF+AT+D+V K  +  A++F+YSPR GTP +   
Sbjct: 315 DEVRAKIPHASITTDIIVGFPGETEEDFQATLDVVKKARFTSAYTFQYSPRPGTPAAEYE 374

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG----KLVGRSPWL 435
            Q+ + V  ER   L     +     N   +G  +E+L++  G  K     ++ GR+   
Sbjct: 375 NQLPKEVVQERYERLMVVQEQVCEEENQKLIGTTVELLVQAGGGRKNDATKRMSGRARDG 434

Query: 436 QSVVL-----NSKNHNIGDIIKVRITDVKISTLYGE 466
           + V              GD + V +T+ K   L  +
Sbjct: 435 RLVHFAPEGDIDGEIRPGDFVTVTVTEAKPFFLIAD 470


>gi|134300331|ref|YP_001113827.1| RNA modification protein [Desulfotomaculum reducens MI-1]
 gi|134053031|gb|ABO51002.1| RNA modification enzyme, MiaB family [Desulfotomaculum reducens
           MI-1]
          Length = 436

 Score =  431 bits (1108), Expect = e-118,   Method: Composition-based stats.
 Identities = 153/449 (34%), Positives = 231/449 (51%), Gaps = 16/449 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + +   + + GC++N Y+S  + D+F   GYE V+    AD  V+NTC +      K   
Sbjct: 1   MAKSAAIYTLGCKVNQYESSAIADLFRQAGYEIVDFEQHADAYVINTCTVTHMGDRKSRQ 60

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            + R         K+    ++ V GC AQ    E+L   P V++VVG +   R+ +L+E 
Sbjct: 61  IIRRA-------SKQNPAAVITVTGCYAQTSPGEVL-EIPGVDLVVGTKDKSRIVQLVEA 112

Query: 143 ARFGKRVVDT--DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
              GK  V+   D    D FE L +       +    AFL IQEGC+ FC +C++PY RG
Sbjct: 113 YSRGKGPVNAVDDIMQTDCFEELPVPTEQGKTR----AFLKIQEGCNSFCAYCIIPYARG 168

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
              SR    V+  A +LI  G  EI L G ++ A  G+   G+      L+  L+++ GL
Sbjct: 169 PVRSRLPENVLSSAEELIQQGFQEIVLTGIHIGA-YGQDFTGKDIDLGWLVERLAKLPGL 227

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            RLR  +  P D+++ LIKA  +   +  +LH+P+QSG D IL  M RR+   ++  +I 
Sbjct: 228 TRLRLGSVEPHDINNALIKAVSEHPNVCRHLHIPLQSGDDEILALMGRRYNTQQFTDLIH 287

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           +I  + P IAI+SD IVGFPGET + F+ T+  V++ G+A    FKYSPR GTP + M +
Sbjct: 288 KINQIMPGIAITSDIIVGFPGETQEHFQNTLKTVERSGFAGIHVFKYSPRKGTPAAEMTD 347

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKH-GKEKGKLVGRSPWLQSVV 439
           QV    K ER   L +        F    VG+ ++VL+E+   K+   L G +     V+
Sbjct: 348 QVAPQDKEERSKSLIELGNRLAHQFAQQQVGKELKVLVEQPYEKDPNLLEGHTDTYLKVL 407

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                   G +++V I  VK STL G ++
Sbjct: 408 FPGDTGLKGQMVRVHIQGVKESTLKGRII 436


>gi|288925880|ref|ZP_06419810.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella buccae D17]
 gi|288337304|gb|EFC75660.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella buccae D17]
          Length = 444

 Score =  431 bits (1108), Expect = e-118,   Method: Composition-based stats.
 Identities = 160/452 (35%), Positives = 264/452 (58%), Gaps = 15/452 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + ++ F+++YGCQMNV DS  +  +    GYE     ++AD I LNTC +RE A  K+Y 
Sbjct: 1   MNKKLFIETYGCQMNVADSEVVASVMKMAGYELCEKEEEADAIFLNTCSVRENAENKIYH 60

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            L  +    ++  K+G +L++ V GC+A+   ++++      ++V GP +Y  LP+++ +
Sbjct: 61  RLDTL----HAERKKGRELILGVLGCMAERVKDDLIDNH-HASLVCGPDSYLNLPDMVAQ 115

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
              G + +D + S  + +  +     G N   G   F++I  GC+ FC +C+VP+TRG E
Sbjct: 116 CEMGNKAIDIELSKTETYRDVIPQRIGGNHVSG---FVSIMRGCNNFCHYCIVPFTRGRE 172

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC----TFSDLLYSLSEIK 258
            SR +  ++ E   L D G  E+TLLGQNVN+  G   +G++     +F+ LL  ++E  
Sbjct: 173 RSRDVESILKEVCDLRDRGFKEVTLLGQNVNS-YGLLPNGKRPADGTSFAQLLRKVAETV 231

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
             +R+R+TTS+P DM+D +++A  D+  L  ++H P QSGSD++L+ MNR++T  +Y   
Sbjct: 232 PEMRVRFTTSNPEDMTDDIVQAVADMPNLCNHIHFPAQSGSDKVLRLMNRKYTRQQYLDK 291

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN- 377
           +  I+ + PD  I++D  VG+  E+++D++ T+ LV ++GY  AF FKYS R GT  +  
Sbjct: 292 VATIKRLIPDCGITTDIFVGYHDESEEDYQQTLSLVREVGYDSAFMFKYSERPGTYAAEH 351

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQ 436
           + + V E  K  RL  L K   E     N    G+   +LIE   K    +L+GR+   +
Sbjct: 352 LPDNVPEEEKVRRLNELIKLQTEISALQNKKDEGKEFVILIENFSKRSRQQLMGRTEQNK 411

Query: 437 SVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           +VV++  NH+IG+ +KVRIT    +TL+GE V
Sbjct: 412 AVVIDKGNHHIGEFVKVRITGSTSATLFGEEV 443


>gi|300933041|ref|ZP_07148297.1| (dimethylallyl)adenosine tRNA methylthiotransferase
           [Corynebacterium resistens DSM 45100]
          Length = 507

 Score =  431 bits (1108), Expect = e-118,   Method: Composition-based stats.
 Identities = 156/452 (34%), Positives = 263/452 (58%), Gaps = 19/452 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + + V+++GCQMNV+DS R+  +    GY  V      D++V NTC +RE A  ++Y  L
Sbjct: 6   RTYEVRTFGCQMNVHDSERLSGLLEDNGYIPVGEGQTPDVVVFNTCAVRENADNRLYGTL 65

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           G+++ +K+S       + + V GC+AQ + + +++++P V+VV G      LP LL R+ 
Sbjct: 66  GQMKAVKDSH----PGMQIAVGGCMAQKDKQTVVKKAPWVDVVFGTHNLGSLPTLLARSA 121

Query: 145 FGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             +R  V+   S+E+    L        R+     ++++  GC+  CTFC+VP  RG E 
Sbjct: 122 HNERAEVEIVDSLEEFPSVLP-----AKRESAYAGWVSVSVGCNNTCTFCIVPSLRGKEQ 176

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE----KCTFSDLLYSLSEIKG 259
            R   +++ E + L+D GV E+TLLGQNVNA+     D E    +  F+ LL +  EI+G
Sbjct: 177 DRRPGEILAEVKALVDQGVSEVTLLGQNVNAYGVNFSDPELERDRGAFAKLLRACGEIEG 236

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           L RLR+T+ HP + +D +I+A  +  V+ P LH+P+QSGSD++LK M R + + ++  I+
Sbjct: 237 LERLRFTSPHPAEFTDDVIEAMAETPVVCPQLHMPLQSGSDKVLKDMRRSYRSKKFLAIL 296

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
           +++R   P  AI++D IVGFPGET++DF+ATMD+V+K  +A A++F+YSPR GTP + M 
Sbjct: 297 EKVRERIPHAAITTDIIVGFPGETEEDFQATMDVVEKSRFASAYTFQYSPRPGTPAAEMD 356

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG---KLVGRSPWLQ 436
            Q+ + V  +R   L +         N+  +G   E+L++  G++     ++ GR+   +
Sbjct: 357 NQIPKAVVQDRYERLLELQERISREENEKLIGTRQELLVQADGRKNDETKRMSGRARDGR 416

Query: 437 SVVLNS--KNHNIGDIIKVRITDVKISTLYGE 466
            +  +   +    GDI++V +T      L+ +
Sbjct: 417 LIHFDPTVEGIRAGDIVEVEVTGAAGHFLFAD 448


>gi|229490909|ref|ZP_04384744.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Rhodococcus erythropolis
           SK121]
 gi|229322299|gb|EEN88085.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Rhodococcus erythropolis
           SK121]
          Length = 521

 Score =  430 bits (1107), Expect = e-118,   Method: Composition-based stats.
 Identities = 160/474 (33%), Positives = 257/474 (54%), Gaps = 28/474 (5%)

Query: 13  MVSQIVDQCIVP-------QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLI 65
           M   + +   VP       + + V++YGCQMNV+DS R+  +    GY +  +  D DL+
Sbjct: 7   MSPALPEPTAVPEPTAKSVRTYEVRTYGCQMNVHDSERLSGLLEDAGYSKAETGTDPDLV 66

Query: 66  VLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVN 125
           V NTC +RE A  K+Y  L ++   K +      D+ + V GC+AQ + + +++++P V+
Sbjct: 67  VFNTCAVRENADNKLYGNLSQLAPNKEA----NPDMQIAVGGCLAQKDRDTVVKKAPFVD 122

Query: 126 VVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEG 185
           VV G      LP LL+RAR  +R         + F           R+     +++I  G
Sbjct: 123 VVFGTHNIGSLPALLDRARHNQRAEVEILDALEAF----PSTLPAKRESAYAGWVSISVG 178

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C+  CTFC+VP  RG E+ R    ++ E + L+D GV E+TLLGQNVNA+     D E+ 
Sbjct: 179 CNNTCTFCIVPALRGKEVDRRPGDILAEVQALVDEGVSEVTLLGQNVNAYGVSFADPEQP 238

Query: 246 T----FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
                F+ LL +   I GL R+R+T+ HP + +D +I+A      + P LH+P+QSGSD+
Sbjct: 239 RDRGAFASLLKACGHIDGLERVRFTSPHPAEFTDDVIEAMATTPNVCPQLHMPLQSGSDK 298

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
           +LK+M R +   +Y  II+++R+  P  AI++D IVGFPGET++DF  T+D+V K  ++ 
Sbjct: 299 VLKAMKRSYRKSKYLGIIEKVRAAMPHAAITTDIIVGFPGETEEDFEETLDVVRKARFSN 358

Query: 362 AFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EK 420
           A++F+YS R GTP + M +Q+ + V  ER + L     E  +  N   VG  +E+L+   
Sbjct: 359 AYTFQYSKRPGTPAAEMADQLPKEVVQERYMRLLAVQEEVNIEENRKLVGTEVELLVAAG 418

Query: 421 HGKEKG---KLVGRSPWLQSVVLNSKNHN-----IGDIIKVRITDVKISTLYGE 466
            G++     +L GR+   + V    + +       GD++ V +T      L  +
Sbjct: 419 EGRKNAATQRLSGRARDGRLVHFRPEGNLDGTIRPGDVVTVVVTHGAPHHLVAD 472


>gi|281424718|ref|ZP_06255631.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella oris F0302]
 gi|281401088|gb|EFB31919.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella oris F0302]
          Length = 444

 Score =  430 bits (1107), Expect = e-118,   Method: Composition-based stats.
 Identities = 157/452 (34%), Positives = 260/452 (57%), Gaps = 15/452 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + ++ ++++YGCQMNV DS  +  +    GY+   + ++AD I LNTC IRE A  K+Y+
Sbjct: 1   MNKKLYIETYGCQMNVADSEVVASVMKMAGYDVCENEEEADAIFLNTCSIRENAENKIYN 60

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            L  +    ++  K+G  L++ V GC+A+   +++++     ++V GP +Y  LP ++  
Sbjct: 61  RLDTL----HAEQKKGRQLILGVLGCMAERVKDDLIKNH-HASLVCGPDSYLNLPTMIAE 115

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
              G   VDT+ S  + +  +     G NR  G   F++I  GC+ FC +C+VPYTRG E
Sbjct: 116 CELGHATVDTNLSTTETYRNVLPQRIGGNRVSG---FVSIMRGCNNFCHYCIVPYTRGRE 172

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC----TFSDLLYSLSEIK 258
            SR +  ++ E + L D G  E+TLLGQNVN+  G   +G++     +F++LL  +++  
Sbjct: 173 RSRDVESILAEVKDLHDKGFKEVTLLGQNVNS-YGLLPNGKRPENGTSFAELLRKVAQSV 231

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
             +R+R+TTS+P DM++ ++ A  +   L  ++H P QSGS++ILK MNR++T  EY   
Sbjct: 232 PDMRVRFTTSNPEDMTEDILHAIAEEPNLCKHIHFPAQSGSNKILKLMNRKYTREEYLDK 291

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN- 377
           +  I+ + P   +++D  VG+  ET++D + T+ LV ++G+  AF FKYS R GT  +  
Sbjct: 292 VAAIKRIIPGCGLTTDIFVGYHDETEEDQQLTLSLVKEVGFDSAFMFKYSERPGTYAAKY 351

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQ 436
           + + V E VK  RL  L           N    G    +L E+  K+    L+GR+   +
Sbjct: 352 LPDNVSEEVKIARLNELIHLQTTISGEQNKKDEGSEFVILTERFSKKDRNHLMGRTEQNK 411

Query: 437 SVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           +V++   NH+IG+ IKVRIT    +TL+GE +
Sbjct: 412 AVIIEKGNHHIGEFIKVRITGSTSATLFGEEI 443


>gi|312139388|ref|YP_004006724.1| tRNA modification enzyme miab [Rhodococcus equi 103S]
 gi|311888727|emb|CBH48039.1| putative tRNA modification enzyme MiaB [Rhodococcus equi 103S]
          Length = 505

 Score =  430 bits (1107), Expect = e-118,   Method: Composition-based stats.
 Identities = 158/464 (34%), Positives = 253/464 (54%), Gaps = 22/464 (4%)

Query: 16  QIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREK 75
           + +DQ    + + V++YGCQMNV+DS R+  +    GY +    + ADL+V NTC +RE 
Sbjct: 2   ETIDQN-AGRSYEVRTYGCQMNVHDSERLSGLLEDAGYTKAVPGEQADLVVFNTCAVREN 60

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135
           A  K+Y  L  +  +K  R      + + V GC+AQ + + +++++P V+VV G      
Sbjct: 61  ADNKLYGNLSHLAPVKEER----PGMQIAVGGCLAQKDRDTVVKKAPWVDVVFGTHNIGS 116

Query: 136 LPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
           LP LLERAR  ++         + F           R+     +++I  GC+  CTFC+V
Sbjct: 117 LPALLERARHNEQAQVEILESLEAF----PSTLPAKRESAYAGWVSISVGCNNTCTFCIV 172

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT----FSDLL 251
           P  RG E+ R    ++ E + L++ GV E+TLLGQNVN++     D E       F+ LL
Sbjct: 173 PSLRGKEVDRRPGDILAEVQALVNEGVLEVTLLGQNVNSYGVSFADPELPRDRGAFAKLL 232

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
            +  +I GL R+R+T+ HP + +D +I+A      + P LH+P+QSGSDR+LK+M R + 
Sbjct: 233 SACGQIDGLERVRFTSPHPAEFTDDVIEAMATTPNVCPQLHMPLQSGSDRVLKAMRRSYR 292

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
           + ++  II+++R+  P  AI++D IVGFPGET++DF+AT+D+V +  +  AF+F+YS R 
Sbjct: 293 SAKFLGIIEKVRAAMPHAAITTDIIVGFPGETEEDFQATLDVVRQARFTSAFTFQYSKRP 352

Query: 372 GTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE----KHGKEKGK 427
           GTP + M  Q+ + V  ER   L     E  +  N   VG  +E+L+     +   E  +
Sbjct: 353 GTPAAEMNGQLPKAVVQERYDRLIALQEEITLEENRKLVGTEVELLVTAGDGRKNAETAR 412

Query: 428 LVGRSPWLQSVVLN-----SKNHNIGDIIKVRITDVKISTLYGE 466
           + GR+   + V          +   GD+I V +T      L  +
Sbjct: 413 MSGRARDGRLVHFKPEGNLDGDLRPGDVITVVVTSAAPHHLVAD 456


>gi|239917253|ref|YP_002956811.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Micrococcus luteus NCTC
           2665]
 gi|281414269|ref|ZP_06246011.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Micrococcus luteus NCTC
           2665]
 gi|239838460|gb|ACS30257.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Micrococcus luteus NCTC
           2665]
          Length = 515

 Score =  430 bits (1107), Expect = e-118,   Method: Composition-based stats.
 Identities = 158/445 (35%), Positives = 245/445 (55%), Gaps = 20/445 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
            + V+++GCQMNV+DS R+  +  S GY  V     ADL+V NTC +RE A  ++Y  LG
Sbjct: 27  TYEVRTFGCQMNVHDSERISGLLESTGYAPVADNAQADLVVFNTCAVRENADNRLYGNLG 86

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +R +K++       + + V GC+AQ +   I RR+P V+VV G      LP LLER+R 
Sbjct: 87  NLRAVKDAH----PGMQIAVGGCLAQKDQAAIQRRAPWVDVVFGTHNIGSLPVLLERSRH 142

Query: 146 GKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
                ++   S+E     L        R    + +++I  GC+  CTFC+VP  RG E  
Sbjct: 143 NAEAEIEILESLEVFPSTLPT-----KRDSTHSGWVSISVGCNNTCTFCIVPSLRGKEKD 197

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R   +++ E + L+  G  E+TLLGQNVN +  +   G++  F+ LL +  EI+GL R+R
Sbjct: 198 RRPGEILAEVQALVGAGAVEVTLLGQNVNTYGVEF--GDRGAFAKLLRACGEIEGLERVR 255

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +T+ HP   +D +I A  +   +MP LH+P+QSGSD++LK M R + + ++ +I++++R 
Sbjct: 256 FTSPHPAAFTDDVIDAMAETPNVMPQLHMPLQSGSDKVLKDMRRSYRSAKFLRILEKVRE 315

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             P  AI++D IVGFPGET++DF  TM +V+   ++ AF+F+YS R GTP   M  QV +
Sbjct: 316 RIPHAAITTDIIVGFPGETEEDFAETMRVVEASRFSSAFTFQYSIRPGTPAGEMEHQVPK 375

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG----KEKGKLVGRSPWLQSVVL 440
            V  ER   L               VG   E+L+         E+G+L GR+P  + V  
Sbjct: 376 AVVQERFERLVALQDRISAEEMATLVGTRQELLVTADSGSKAAERGRLSGRAPDNRLVHF 435

Query: 441 N----SKNHNIGDIIKVRITDVKIS 461
           +    ++    GD + V +T+    
Sbjct: 436 SVPAGAETPRPGDFVTVTVTEAHPF 460


>gi|168334526|ref|ZP_02692687.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Epulopiscium sp. 'N.t.
           morphotype B']
          Length = 474

 Score =  430 bits (1107), Expect = e-118,   Method: Composition-based stats.
 Identities = 169/446 (37%), Positives = 254/446 (56%), Gaps = 15/446 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
            FF+ ++GCQMN  DS ++E +    GY +  S   AD ++ NTC +RE A  K++  LG
Sbjct: 34  TFFIGTFGCQMNALDSEKIEGVLTKLGYTKAASEKTADFLIYNTCCVRENAELKIFGKLG 93

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLE-R 142
            +++ K        + +V + GC+ Q +   + + ++   V+++ G    Y+LPELL+ R
Sbjct: 94  ALKHRKKKX----PNFMVALCGCMMQQDVVLKTLKQKYKFVDIIFGTYNIYKLPELLQTR 149

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
              G+ ++D   + ++  E L  +     RK    + + I  GC+ FCT+C+VPY RG E
Sbjct: 150 IETGENIIDIWETHQEIVEDLPSI-----RKHQFKSCVNIMYGCNNFCTYCIVPYVRGRE 204

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR +  + D+ + L+D+GV EI LLGQNVN+  GK L   K TF+DLL  L+ I GL R
Sbjct: 205 RSREVDDIYDQVKALVDDGVKEIMLLGQNVNS-YGKNL-ATKPTFTDLLERLASIDGLKR 262

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+ TSHP+D S  LI +    D +   LHLP+QSGS RIL+ MNR +T  EY  ++ +I
Sbjct: 263 IRFMTSHPKDFSXQLIDSIAKHDNICKGLHLPIQSGSTRILQQMNRGYTREEYLDLVAKI 322

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           +   P   +++D IVGFPGE+D DF  T+D+V +I Y  AF+F YS R GTP + M  QV
Sbjct: 323 KKAIPSATLTTDIIVGFPGESDSDFADTLDVVTQIQYLSAFTFIYSKRTGTPAATMENQV 382

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLVGRSPWLQSVVLN 441
           DE+V   R   L   +      F  A +G   E+L+E   K     L GR+     V + 
Sbjct: 383 DEDVIKARFNQLVAAVNTIAADFMAAQIGNTYEILLEDSSKNDATMLSGRTDTGILVHVK 442

Query: 442 SKNHNIGDIIKVRITDVKISTLYGEL 467
           +  + IG+ + V+IT+ K   L GE+
Sbjct: 443 APLNFIGEFVTVQITNSKTHYLVGEI 468


>gi|149369934|ref|ZP_01889785.1| 2-methylthioadenine synthetase [unidentified eubacterium SCB49]
 gi|149356425|gb|EDM44981.1| 2-methylthioadenine synthetase [unidentified eubacterium SCB49]
          Length = 479

 Score =  430 bits (1107), Expect = e-118,   Method: Composition-based stats.
 Identities = 162/460 (35%), Positives = 257/460 (55%), Gaps = 21/460 (4%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
            ++ F++SYGC MN  DS  +  +   QG+    ++++ADL+++NTC IR+KA + V   
Sbjct: 23  KRKLFIESYGCAMNFSDSEIVASILSEQGFNTTQTLEEADLVLVNTCSIRDKAEQTVRKR 82

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           L +   +K         + V V GC+A+   E+ L    IV++VVGP  Y  LP LL   
Sbjct: 83  LEKYNAVKRDI---NPKMKVGVLGCMAERLKEKFLDEEKIVDMVVGPDAYKDLPNLLAEV 139

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             G   V+   S ++ +  ++ V        G+ A ++I  GCD  CTFCVVP+TRG E 
Sbjct: 140 EAGNDAVNVVLSKDETYGDIAPVRLN---TNGINALVSITRGCDNMCTFCVVPFTRGRER 196

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK-------------CTFSDL 250
           SR    ++DE  KL ++G  E+TLLGQNV+++   G   +K              +FS L
Sbjct: 197 SRDPKSILDEISKLANSGYKEVTLLGQNVDSYLWYGGGLKKDYKNATEMEKATATSFSQL 256

Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
           L  ++  +  +R+R++TS+P+DM++ +         +  ++HLPVQSGS+RILK MNR+H
Sbjct: 257 LDLVASAQPEMRIRFSTSNPQDMTEEVFHVMAKHKNICKHVHLPVQSGSNRILKEMNRQH 316

Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370
           T  EY  +++R+  + P+ +IS D I+GFP ET+ D + T+DL++K+ ++  + +KYS R
Sbjct: 317 TVEEYLALVNRMWEIIPEASISQDMIIGFPSETEQDHKDTLDLMEKVKFSFGYMYKYSER 376

Query: 371 LGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKL 428
            GT  +    + V E  K  RL  +  + R+         VG++ EVLIEK  K+   + 
Sbjct: 377 PGTMAARKFEDDVPEATKKRRLQEIVDQQRKDAAYRTQQFVGKVTEVLIEKVSKKNPDQW 436

Query: 429 VGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            GR+     VV   +N+ +GD ++V I D   +TL GE V
Sbjct: 437 SGRNEQSIGVVFPKENYKVGDFVQVLIKDCTSATLIGEAV 476


>gi|167753302|ref|ZP_02425429.1| hypothetical protein ALIPUT_01575 [Alistipes putredinis DSM 17216]
 gi|167659233|gb|EDS03363.1| hypothetical protein ALIPUT_01575 [Alistipes putredinis DSM 17216]
          Length = 458

 Score =  430 bits (1107), Expect = e-118,   Method: Composition-based stats.
 Identities = 166/448 (37%), Positives = 259/448 (57%), Gaps = 14/448 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
             ++ FV++YGCQMNV D+  +  +   +GY   + +++AD++++NTC IR+ A ++++ 
Sbjct: 15  AGRKLFVETYGCQMNVGDTEIVVAIMQQEGYVYTDKIEEADVVLINTCSIRDNAEQRIWG 74

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            L  + +L+    +    LLV + GC+A+   E +L     V++V GP  Y  LP L+  
Sbjct: 75  RLREMAHLR----RRRPGLLVGIIGCMAERLRERLLEGENPVDIVAGPDAYRDLPRLVRE 130

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           A  G R V+   S E+ +  ++ V      + GV++++ I  GC+ +C++CVVPYTRG+E
Sbjct: 131 AGEGGRGVNVLLSREETYAEIAPVRLD---RNGVSSYIAIMRGCNNYCSYCVVPYTRGVE 187

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR    ++ EA  L +NG  E+TLLGQNVN++R   +D     F +L+  +SEI  L+R
Sbjct: 188 RSRDPQTILSEALCLFENGYREVTLLGQNVNSYRYGAVD-----FPELMRLVSEISPLLR 242

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+ TSHP+DMSD L++       +   +HLP QSGS R+L+ MNR++T   Y   I  I
Sbjct: 243 VRFATSHPKDMSDRLLEVMASKPNICRCIHLPAQSGSSRMLEKMNRKYTREWYLDRIAAI 302

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG-SNMLEQ 381
           R   PD AI++D I GF  ETD+D R T+ L+ ++GY  A+ FKYS R  T    +M + 
Sbjct: 303 RRYMPDCAITTDLIAGFCSETDEDHRQTLSLMREVGYEFAYMFKYSERPDTFAQRHMPDD 362

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440
           V ++VK  RL  +           N   VG+  E+L+E   K   + L GR+   + VV 
Sbjct: 363 VPDSVKTARLNEIIALQNTLSAESNARDVGKEFEILVEGTSKRSDRQLFGRTSQNKVVVF 422

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
           +     IGD ++VR+T    +TL GELV
Sbjct: 423 DRGECRIGDYVRVRVTASSSATLQGELV 450


>gi|206890169|ref|YP_002248877.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|229891018|sp|B5YKW2|MIAB_THEYD RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|206742107|gb|ACI21164.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 431

 Score =  430 bits (1106), Expect = e-118,   Method: Composition-based stats.
 Identities = 163/447 (36%), Positives = 265/447 (59%), Gaps = 18/447 (4%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           +  +  ++K++GCQMN +DS RM  +  ++G+  V+    AD+++ NTC IR KA +K +
Sbjct: 1   MKGRAVYIKTFGCQMNEHDSERMLGILGTKGFIEVDEPKKADIVIFNTCAIRHKAEQKFF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S LGR+++LK    K+   L ++VAGC AQ +GE++L + P ++ ++GP   + +  ++E
Sbjct: 61  SSLGRVKHLK----KKNPQLKIIVAGCSAQLQGEKLLNKLPYIDYIIGPDNLHVIENIIE 116

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
                +   D +  V +       ++    RK  V A++ I  GC+ +CT+CVVPYTRG 
Sbjct: 117 NQVSHRIFTDENPEVAN-------INLPVKRKDCVKAWVNIIYGCNNYCTYCVVPYTRGK 169

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR +  ++ E   L + G  E+TLLGQNVN+++    DG    F  LL  + +I+G+ 
Sbjct: 170 ERSRPVDDIIKEISLLAEQGYKEVTLLGQNVNSYK----DGN-TNFPLLLEKVEKIEGIK 224

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+ TSHP+D+S  L+    D   +  ++HLP+Q+GS++ILK MNR++T  EY + I  
Sbjct: 225 RIRFITSHPKDLSKELVDVMKDYKKICEHIHLPLQAGSNKILKLMNRKYTYEEYFEKICW 284

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R   PDIAI+SD IVGFP E  +DF  T++ + +I +   F+FK+SPRLGT  + +   
Sbjct: 285 LREAIPDIAITSDIIVGFPQEQHEDFEKTINALKEIRFDGIFAFKFSPRLGTAAAKLDGH 344

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           + E VKA RL+ + K   E     N    G+I EVL+E   +E G   G++   + V + 
Sbjct: 345 ISEEVKAARLIEVLKLQDEITERKNKRLEGKIQEVLVEGKDEE-GFTTGKTRTNKVVKIY 403

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
           S +   G+I+ V+I      +L G+++
Sbjct: 404 S-DIKAGEIVNVKIAKTHRHSLEGDII 429


>gi|315606981|ref|ZP_07881987.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella buccae ATCC
           33574]
 gi|315251362|gb|EFU31345.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella buccae ATCC
           33574]
          Length = 444

 Score =  430 bits (1106), Expect = e-118,   Method: Composition-based stats.
 Identities = 160/452 (35%), Positives = 264/452 (58%), Gaps = 15/452 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + ++ F+++YGCQMNV DS  +  +    GYE     ++AD I LNTC +RE A  K+Y 
Sbjct: 1   MNKKLFIETYGCQMNVADSEVVASVMKMAGYELCEKEEEADAIFLNTCSVRENAENKIYH 60

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            L  +    ++  K+G +L++ V GC+A+   ++++      ++V GP +Y  LP+++ +
Sbjct: 61  RLDTL----HAERKKGRELILGVLGCMAERVKDDLIDNH-HASLVCGPDSYLNLPDMVAQ 115

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
              G + +D + S  + +  +     G N   G   F++I  GC+ FC +C+VP+TRG E
Sbjct: 116 CEMGNKAIDIELSKTETYRDVIPQRIGGNHVSG---FVSIMRGCNNFCHYCIVPFTRGRE 172

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC----TFSDLLYSLSEIK 258
            SR +  ++ E   L D G  E+TLLGQNVN+  G   +G++     +F+ LL  ++E  
Sbjct: 173 RSRDVESILKEVCDLRDRGFKEVTLLGQNVNS-YGLLPNGKRPADGTSFAQLLRKVAETV 231

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
             +R+R+TTS+P DM+D +++A  D+  L  ++H P QSGSD++L+ MNR++T  +Y   
Sbjct: 232 SEMRVRFTTSNPEDMTDDIVQAVADMPNLCNHIHFPAQSGSDKVLRLMNRKYTRQQYLDK 291

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN- 377
           +  I+ + PD  I++D  VG+  E+++D++ T+ LV ++GY  AF FKYS R GT  +  
Sbjct: 292 VATIKRLIPDCGITTDIFVGYHDESEEDYQQTLSLVREVGYDSAFMFKYSERPGTYAAEH 351

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQ 436
           + + V E  K  RL  L K   E     N    G+   +LIE   K    +L+GR+   +
Sbjct: 352 LPDNVPEEEKVRRLNELIKLQTEISALQNKKDEGKEFVILIENFSKRSRQQLMGRTEQNK 411

Query: 437 SVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           +VV++  NH+IG+ +KVRIT    +TL+GE V
Sbjct: 412 AVVIDKGNHHIGEFVKVRITGSTSATLFGEEV 443


>gi|289522346|ref|ZP_06439200.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
 gi|289504182|gb|EFD25346.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
          Length = 453

 Score =  430 bits (1106), Expect = e-118,   Method: Composition-based stats.
 Identities = 182/443 (41%), Positives = 266/443 (60%), Gaps = 11/443 (2%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           F +  YGCQMN YD  R+      +G+   +  ++AD +V+ TC IREKA +KV S +GR
Sbjct: 8   FAIDIYGCQMNQYDGDRLRTSLIRRGWIETDR-NEADAVVIVTCSIREKAEQKVLSEIGR 66

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
              L     K  G  L+ V GC+AQ  G ++LRR P V VV GP+    +P+ LE A   
Sbjct: 67  YGKL----YKTKGKPLLAVIGCMAQNMGADLLRRFPQVKVVAGPRHIGWVPDALENAMRH 122

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           K V+  D   ED  E + + D    R     AF+TI  GCD FCT+C+VPY RG  +SR 
Sbjct: 123 KTVLYLD---EDPREMIDLHDAPMIRSNPYKAFVTIAHGCDNFCTYCIVPYVRGRFVSRR 179

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
             +++ E  +L+D+GV E+TLLGQNV++  GK L  E   FS+LL  ++++ GL+R+R+T
Sbjct: 180 PGEILKEVSELVDDGVLEVTLLGQNVDS-YGKDLK-ESYRFSNLLQDVAKVPGLLRVRFT 237

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
           TSHPRD ++ +I+A  +   + P ++LP+QSGSDRILK MNR +T  +Y +II R+R   
Sbjct: 238 TSHPRDFTEDVIEAMAEESKICPAVNLPIQSGSDRILKKMNRGYTVEDYGRIIKRLREAL 297

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           P+++I+SD IVGFPGET++DF+ T++++  + +    +  YSPR GTP +NM  Q+ E  
Sbjct: 298 PEVSITSDLIVGFPGETEEDFQCTLEMLKTMEFDLVHTASYSPREGTPAANMSNQIPEEE 357

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLNSKNH 445
           K  RL  + +         N    G+  EVL++    K KG L GR+P  + V++     
Sbjct: 358 KKRRLSIVNELQDAISFKKNKILEGKFFEVLLDDFAPKGKGMLQGRTPTDKVVLVPGDES 417

Query: 446 NIGDIIKVRITDVKISTLYGELV 468
            +G + +VRIT      LYGE+V
Sbjct: 418 MLGKLCEVRITGASNWYLYGEIV 440


>gi|311030160|ref|ZP_07708250.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus sp.
           m3-13]
          Length = 514

 Score =  430 bits (1105), Expect = e-118,   Method: Composition-based stats.
 Identities = 168/436 (38%), Positives = 252/436 (57%), Gaps = 15/436 (3%)

Query: 14  VSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIR 73
           +S+      V ++F++++YGCQMN +D+  M  +F + GYE   +++DAD+I+LNTC IR
Sbjct: 57  ISEEFKNLGVGKKFYIRTYGCQMNEHDTEVMAGIFLALGYEATYTVNDADVILLNTCAIR 116

Query: 74  EKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQ 131
           E A  KV+  LG ++ LK    K    LL+ V GC++Q E    +IL+    V+++ G  
Sbjct: 117 ENAENKVFGELGHLKTLK----KSRPGLLIGVCGCMSQEESVVNKILKTYQQVDMIFGTH 172

Query: 132 TYYRLPELLERARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190
             +RLP +L+ A   K +V   +S E D  E L       NRK  + A++ I  GCDKFC
Sbjct: 173 NIHRLPNILKDAYMSKEMVIEVWSKEGDVIENLP-----KNRKGEIKAWVNIMYGCDKFC 227

Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDL 250
           T+C+VPYTRG E SR    ++ E R L   G  EITLLGQNVNA  GK  +  K    DL
Sbjct: 228 TYCIVPYTRGKERSRRPEDIIQEVRHLAAQGYKEITLLGQNVNA-YGKDFEDIKYGLGDL 286

Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
           +  + +I  + R+R+TTSHPRD  D L++       L+ ++HLPVQSGS  ILK M R++
Sbjct: 287 MDEIRKID-IPRIRFTTSHPRDFDDRLVEVLAKGGNLLDHIHLPVQSGSSEILKLMARKY 345

Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370
               Y +++ +I++  P+ ++++D IVGFP ET++ F  TM L  ++ +  A++F YSPR
Sbjct: 346 DRERYLELVGKIKAAMPNASLTTDIIVGFPNETEEQFEETMSLYREVEFDTAYTFIYSPR 405

Query: 371 LGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LV 429
            GTP + M++ V   VK +RL  L   + E          GQI+EVL+E   K+  + L 
Sbjct: 406 EGTPAAKMVDNVPLEVKKDRLQRLNALVNEISAKKLKEYEGQIVEVLVEGESKKNPEVLA 465

Query: 430 GRSPWLQSVVLNSKNH 445
           G +   + V   +   
Sbjct: 466 GYTDKSKLVNFRAPKS 481


>gi|300858669|ref|YP_003783652.1| (dimethylallyl)adenosine tRNA methylthiotransferase
           [Corynebacterium pseudotuberculosis FRC41]
 gi|300686123|gb|ADK29045.1| (dimethylallyl)adenosine tRNA methylthiotransferase
           [Corynebacterium pseudotuberculosis FRC41]
 gi|302206376|gb|ADL10718.1| (Dimethylallyl)adenosine tRNA methylthiotransferase
           [Corynebacterium pseudotuberculosis C231]
 gi|302330932|gb|ADL21126.1| (Dimethylallyl)adenosine tRNA methylthiotransferase
           [Corynebacterium pseudotuberculosis 1002]
 gi|308276619|gb|ADO26518.1| (Dimethylallyl)adenosine tRNA methylthiotransferase
           [Corynebacterium pseudotuberculosis I19]
          Length = 512

 Score =  429 bits (1104), Expect = e-118,   Method: Composition-based stats.
 Identities = 156/456 (34%), Positives = 253/456 (55%), Gaps = 23/456 (5%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + + V+++GCQMNV+DS R+  +    GY  V + DD DL+V NTC +RE A  ++Y  L
Sbjct: 15  KTYEVRTFGCQMNVHDSERLSGLLEDAGYSPVAAGDDPDLVVFNTCAVRENADMRLYGTL 74

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           G++R  K  R      + + V GC+AQ + + +++++P V+VV G      LP LL+RA 
Sbjct: 75  GQLRATKIER----PGMQIAVGGCLAQKDKDAVVKKAPWVDVVFGTHNIGSLPALLDRAE 130

Query: 145 FGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
              R  V+   S+E     L        R+     ++++  GC+  CTFC+VP  RG E+
Sbjct: 131 HNNRAQVEIVDSLEQFPSVLP-----AKRESAYAGWVSVSVGCNNTCTFCIVPSLRGKEV 185

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD----GEKCTFSDLLYSLSEIKG 259
            R    ++ E   L++ GV E+TLLGQNVNA+     D     ++  FS LL +  +I+G
Sbjct: 186 DRRPGDILAEVHALVEQGVSEVTLLGQNVNAYGVNFADSSIERDRSAFSKLLRACGDIEG 245

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           L RLR+T+ HP + +  +I A  +   + P LH+P+QSGSD++LK M R + + ++  I+
Sbjct: 246 LDRLRFTSPHPAEFTSDVIDAMAETPNICPQLHMPLQSGSDKVLKEMRRSYRSKKFLAIL 305

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
           D +R   P  +I++D IVGFPGET++DF+AT+++V+K  +  A++F+YSPR GTP +   
Sbjct: 306 DEVREKIPHASITTDIIVGFPGETEEDFQATLEVVEKARFTSAYTFQYSPRPGTPAAEYE 365

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEK---GKLVGRSPWL 435
            Q+ + V  ER   L +      +  N   +G  +E+L+  + G++     +L GR+   
Sbjct: 366 NQIPKEVVQERYERLLELQERVSLEENQKLIGTEVELLVQTEGGRKNNKTNRLTGRARDG 425

Query: 436 QSVVLN-----SKNHNIGDIIKVRITDVKISTLYGE 466
           + V  +           GDII   +T      L  +
Sbjct: 426 RLVHFSPEGSTDGEIRPGDIIVTTVTSAAPHFLIAD 461


>gi|317125291|ref|YP_004099403.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Intrasporangium calvum
           DSM 43043]
 gi|315589379|gb|ADU48676.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Intrasporangium calvum
           DSM 43043]
          Length = 510

 Score =  429 bits (1104), Expect = e-118,   Method: Composition-based stats.
 Identities = 163/467 (34%), Positives = 250/467 (53%), Gaps = 24/467 (5%)

Query: 17  IVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYE------RVNSMDDADLIVLNTC 70
           +  + ++P+ + V+++GCQMNV+DS R+  +  + GY            D AD++V NTC
Sbjct: 1   MTTENMMPKTYDVRTHGCQMNVHDSERLAGLLETAGYVDVATVPVAQRPDVADVVVFNTC 60

Query: 71  HIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGP 130
            +RE A  K+Y  LG++R  K        D+ + V GC+AQ +   I+ R+P V+VV G 
Sbjct: 61  AVRENADNKLYGNLGQLRPAKLR----NPDMQIAVGGCMAQKDRSTIVERAPWVDVVFGT 116

Query: 131 QTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190
                LP LL RA   KR         + F           R    + +++I  GC+  C
Sbjct: 117 HNIGSLPALLARAAHNKRAEVEILESLETFPSTLPTR----RDSAYSGWVSISVGCNNTC 172

Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDL 250
           TFC+VP  RG E  R   +++ E   L+  GV EITLLGQNVN +  +   G++  F  L
Sbjct: 173 TFCIVPSLRGTEQDRRPGEILAEIEALVAQGVIEITLLGQNVNTYGVEF--GDRLAFGKL 230

Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
           L +  EI+GL R+R+T+ HP   +D +I A  +   +MP LH+P+QSGSD +L+ M R +
Sbjct: 231 LRACGEIEGLERVRFTSPHPAAFTDDVILAMAETPNVMPSLHMPLQSGSDTVLRQMRRSY 290

Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370
            +  +  I+D +R   PD AI++D IVGFPGET++DF+ T+D+V +  ++ AF+F+YS R
Sbjct: 291 RSARFLGILDTVREHIPDAAITTDIIVGFPGETEEDFQGTLDVVRQARFSSAFTFQYSIR 350

Query: 371 LGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI---EK-HGKEKG 426
            GTP + M +QV + V  ER   L     E   + N    G+ +EVL+   E     E  
Sbjct: 351 PGTPAATMSDQVPKAVVQERFDRLLALQEEVSWAENRRFEGREVEVLVAPAEGRKDSETQ 410

Query: 427 KLVGRSPWLQSVVLN----SKNHNIGDIIKVRITDVKISTLYGELVV 469
           ++ GR+   + V       S+    GD++ V +T      L  +  V
Sbjct: 411 RMSGRARDNRLVHFAVPDGSERPRPGDLVTVGVTYGAPHHLVADAAV 457


>gi|110638221|ref|YP_678430.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Cytophaga
           hutchinsonii ATCC 33406]
 gi|123058778|sp|Q11U26|MIAB_CYTH3 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|110280902|gb|ABG59088.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Cytophaga hutchinsonii
           ATCC 33406]
          Length = 481

 Score =  429 bits (1104), Expect = e-118,   Method: Composition-based stats.
 Identities = 157/448 (35%), Positives = 257/448 (57%), Gaps = 11/448 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ +++SYGCQMN  DS  +  +   +G++  ++ ++AD+I+LNTC IR+ A +KV   L
Sbjct: 38  RKLYIESYGCQMNFSDSEIVMSILTEEGFDTTSTPNNADVILLNTCSIRDNAEQKVRHRL 97

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
              + LK    +    ++V V GC+A+    ++L    IV++VVGP  Y  LP L+    
Sbjct: 98  VHFKGLK----RNKPSMIVGVLGCMAERLKAQLLEEEKIVDMVVGPDAYRDLPNLINEVD 153

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G + V+   S E+ +  ++ +    +   GV+AF++I  GCD  C+FCVVPYTRG E S
Sbjct: 154 SGHKAVNVFLSREETYADINPLRLSGD---GVSAFVSIMRGCDNMCSFCVVPYTRGRERS 210

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL-DGEKCTFSDLLYSLSEIKGLVRL 263
           R    +++E R+L+ NG  E+TLLGQNV++++       E+  F+ LL  ++ +   +R+
Sbjct: 211 RDAHSILNEVRELVANGYKEVTLLGQNVDSYKWSAEGTDERVNFAQLLERVALVDPDLRV 270

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R++TSHP+D++D ++      D +   +HLP QSG+ RIL+ MNR +T   Y + I +IR
Sbjct: 271 RFSTSHPKDITDEVLYTMKKYDNICNSIHLPAQSGNTRILELMNRTYTREWYMERITKIR 330

Query: 324 SVR-PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQ 381
            +   D  ISSD I GF  ET+++ + T+ L++   +   + F YS R GTP +  + + 
Sbjct: 331 QILGDDCGISSDTIAGFCSETEEEHQDTLSLMEFARFDFGYQFVYSERPGTPAAKKLADD 390

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440
           V E+VK  RL  +    R+  +  N A +G I ++LIE   K+    L GR+      + 
Sbjct: 391 VPEDVKQRRLSEIITVQRQLSLEHNQAQIGTIQKILIEGVSKKSEHDLKGRNSRNMMAIF 450

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
             KN++ G  + V IT     TL+GE+V
Sbjct: 451 PKKNYSKGQYVDVLITGCSGGTLFGEIV 478


>gi|282600854|ref|ZP_05979919.2| tRNA-I(6)A37 thiotransferase enzyme MiaB [Subdoligranulum variabile
           DSM 15176]
 gi|282571154|gb|EFB76689.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Subdoligranulum variabile
           DSM 15176]
          Length = 447

 Score =  429 bits (1104), Expect = e-118,   Method: Composition-based stats.
 Identities = 178/449 (39%), Positives = 252/449 (56%), Gaps = 14/449 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
            P   FV+SYGCQ NV D  ++  +    G+   ++++DADLI+ NTC +RE A ++V+ 
Sbjct: 8   TPPLAFVRSYGCQQNVNDGEKIRGVLQDVGFGICDTLEDADLILFNTCAVREHAEQRVFG 67

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELL 140
            +G ++ LK         L++ V GC+AQ     E++ +  P V++V G     RLP +L
Sbjct: 68  NIGALKKLKEQ----NPRLIIGVCGCMAQQPHIVEKLRQSYPYVDLVFGVDGIDRLPAML 123

Query: 141 -ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
            ER R GKR ++T        E + I      R  G  A+L I  GCD FCT+C+VPY R
Sbjct: 124 AERLRRGKRYLETPEQRNAVVEEMPI-----RRDSGFRAWLPIMYGCDNFCTYCIVPYVR 178

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G E SR    ++ E R LI  G  EITLLGQNVN+  GKGL G    F+DLL  L  + G
Sbjct: 179 GRERSREPDAILAEFRDLITKGYKEITLLGQNVNS-YGKGL-GNPIDFADLLNLLCAVPG 236

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
             ++R+ TSHP+D S  LI        +  ++HLPVQSGS+R+L+ MNR +T  +Y  ++
Sbjct: 237 DYQIRFMTSHPKDASRKLIDTIAAQPHMCKHIHLPVQSGSNRLLQQMNRHYTVEQYLDLV 296

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
           D  R+  P +  SSD IVGFPGET++DF AT++LV K+GY Q F+F YS R GTP + M 
Sbjct: 297 DYARNKIPGVTFSSDIIVGFPGETEEDFEATLELVRKVGYMQLFTFIYSKRNGTPAAKMP 356

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV 439
           +      KA R+  L +   E   +   +  GQ + VL+E  G+  G + GR      V 
Sbjct: 357 DPTTHAEKAARMERLLRTQDEIAFAAIASMAGQNVRVLVEAAGRTPGTVNGRLDNNLVVE 416

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
             +    IG   +V +T  + + L GELV
Sbjct: 417 FPAPEMLIGQWARVNLTGSRAALLTGELV 445


>gi|255326358|ref|ZP_05367442.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Rothia mucilaginosa ATCC
           25296]
 gi|255296575|gb|EET75908.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Rothia mucilaginosa ATCC
           25296]
          Length = 504

 Score =  429 bits (1103), Expect = e-118,   Method: Composition-based stats.
 Identities = 156/464 (33%), Positives = 253/464 (54%), Gaps = 22/464 (4%)

Query: 13  MVSQIVDQCIVP----QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLN 68
           M S + D    P    + + V+++GCQMNV+DS RM  +  + GY R       DL+V N
Sbjct: 1   MTSTLSDSAQTPETSPRTYEVRTFGCQMNVHDSERMSGLLEANGYVRAEEGTQPDLVVFN 60

Query: 69  TCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVV 128
           TC +RE A+ ++Y  LG++  +K +       + + V GC+AQ + + I+ ++P V+VV 
Sbjct: 61  TCAVRENASNRLYGNLGQLAPVKRAHK----GMQIAVGGCLAQKDQDAIIEKAPWVDVVF 116

Query: 129 GPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
           G      LP LLERAR             + F           R    + +++I  GC+ 
Sbjct: 117 GTHNIGALPTLLERARHNHEAQAELLESLEVFPSTLPT----KRDHVYSGWVSISVGCNN 172

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS 248
            CTFC+VP  RG E  R    ++ E + L+D+G  E+TLLGQNVN++  +   G++  FS
Sbjct: 173 TCTFCIVPSLRGKEKDRRPGDILAEVQALVDDGAIEVTLLGQNVNSYGVEF--GDRQAFS 230

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
            LL +  EI+GL R+R+T+ HP   +D +I A  +   +MP LH+P+QSGSD++LK M R
Sbjct: 231 KLLRACGEIEGLERVRFTSPHPAMFTDDVIDAMAETPNVMPVLHMPLQSGSDKVLKDMRR 290

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
            + + ++  I+D++R   P+  I++D IVGFPGET++DF+ T+ +V++  ++ AF+F+YS
Sbjct: 291 SYRSKKFLNILDKVRERIPNAVITTDIIVGFPGETEEDFQDTLKVVEQARFSSAFTFQYS 350

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE----KHGKE 424
            R GTP + M  Q+ + V  ER   L           N   +G+ +E+++     +  ++
Sbjct: 351 IRPGTPAATMENQIPKEVVQERYERLIALQDRIAGEENRKQLGKTVELMVVAEAGRKAEQ 410

Query: 425 KGKLVGRSPWLQSVVLNSKN----HNIGDIIKVRITDVKISTLY 464
             +L GR P  + V  +          GD++ V IT+     L 
Sbjct: 411 THRLSGRGPDQRLVHFSVPEGCETPRPGDMVTVPITEAGSFHLI 454


>gi|317506460|ref|ZP_07964261.1| MiaB family RNA modification enzyme [Segniliparus rugosus ATCC
           BAA-974]
 gi|316255221|gb|EFV14490.1| MiaB family RNA modification enzyme [Segniliparus rugosus ATCC
           BAA-974]
          Length = 519

 Score =  429 bits (1103), Expect = e-118,   Method: Composition-based stats.
 Identities = 156/461 (33%), Positives = 259/461 (56%), Gaps = 22/461 (4%)

Query: 21  CIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKV 80
               + + ++++GCQMNV+DS R+  +  + G+ +      AD++V NTC +RE A +++
Sbjct: 23  TAASRTYELRTFGCQMNVHDSERLAGLLEADGHVKAEPGQTADVVVFNTCAVRENADDRL 82

Query: 81  YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140
           Y  LG +R +K++       + + V GC+AQ +G+ +LR++P V+VV G      LP LL
Sbjct: 83  YGTLGHLRPVKDA----NPGMQIAVGGCLAQKDGDTVLRKAPWVDVVFGTHNIGSLPALL 138

Query: 141 ERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
            RA   +   V+   S++     L        R      +++I  GC+  CTFC+VP  R
Sbjct: 139 RRAAHNQAAQVEIVDSLQAFPSTLP-----SKRDSLHAGWVSIAVGCNNTCTFCIVPSLR 193

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG----EKCTFSDLLYSLS 255
           G ++ R+  ++  E R L+  GV E+TLLGQNVNA+     D     ++  F+ LL S+ 
Sbjct: 194 GKQLDRAPEEIAAEVRALVAEGVLEVTLLGQNVNAYGSSFADPALARDRGAFAKLLRSMG 253

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
           EI+GL R+R+T+ HP + ++ ++ A  +   + P+LH+P+QSGSDRILK+M R + + ++
Sbjct: 254 EIEGLERVRFTSPHPAEFTEDVVLAMAETPNVCPHLHMPLQSGSDRILKAMRRSYRSAKF 313

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
             I+ R+R + PD AI++D IVGFPGET++DF+ T+++V +  +A A++F+YS R GTP 
Sbjct: 314 LGIVRRVRELLPDAAITTDIIVGFPGETEEDFQQTLEVVAEARFASAYTFQYSKRPGTPA 373

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI----EK-HGKEKGKLVG 430
           + + +QV + V AER   L        +  N   +G+ +E+++    E     +  +L G
Sbjct: 374 AELPDQVAKEVVAERYQRLVDLQERICLEENRKQLGREVELVVAAPHEGKKNAQTARLSG 433

Query: 431 RSPWLQSVVL---NSKNHNIGDIIKVRITDVKISTLYGELV 468
           R+   + V            GD +  RI       L GE V
Sbjct: 434 RAKDGRLVHFSPLPGAQPRPGDFVVARIAHAAPHHLIGEAV 474


>gi|160945078|ref|ZP_02092304.1| hypothetical protein FAEPRAM212_02597 [Faecalibacterium prausnitzii
           M21/2]
 gi|158442809|gb|EDP19814.1| hypothetical protein FAEPRAM212_02597 [Faecalibacterium prausnitzii
           M21/2]
          Length = 463

 Score =  429 bits (1103), Expect = e-118,   Method: Composition-based stats.
 Identities = 175/470 (37%), Positives = 256/470 (54%), Gaps = 15/470 (3%)

Query: 3   LFIKLIGVAH--MVSQIVDQCI-VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSM 59
           +F++ I   H  + +++V Q    P   FV SYGCQ NV D  R++ +    GY   +  
Sbjct: 2   VFLEYINFEHNTVAAELVRQTYDTPPLAFVHSYGCQQNVNDGERIKGVLVDIGYGLCDKP 61

Query: 60  DDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEI 117
           +DADLI+ NTC +RE A ++V+  +G ++ LK         L++ + GC+A  +   E++
Sbjct: 62  EDADLILFNTCAVREHAEQRVFGNVGALKGLKEK----KPGLIIGLCGCMANQKHVVEKL 117

Query: 118 LRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT 177
            +  P V++V G      LP+L+ +     + V  D +          +     R+    
Sbjct: 118 RKSYPYVDLVFGVDGIDTLPQLIAQKLQKHKRVLLDPAQRPVIVENIPIR----RESEFR 173

Query: 178 AFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG 237
           A+L I  GCD FCT+C+VPY RG E SR    ++ E R L++ G  EITLLGQNVN+  G
Sbjct: 174 AWLPIMYGCDNFCTYCIVPYVRGREKSRKPGDILAEFRSLVEAGYKEITLLGQNVNS-YG 232

Query: 238 KGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQS 297
           KGL+ E+  FSDLL  L  + G   +R+ TSHP+D S  LI        L  +LHLPVQ 
Sbjct: 233 KGLE-EQIDFSDLLNLLCTVPGDYHIRFMTSHPKDASHKLIDTIAAQPKLCKHLHLPVQC 291

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
           GSDR+L+ MNR +T  +Y ++ID  R   P I  SSD IVGFPGET++DF  T++LV K+
Sbjct: 292 GSDRLLQQMNRHYTVEQYLELIDYARKTVPGITFSSDIIVGFPGETEEDFVKTLELVRKV 351

Query: 358 GYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVL 417
           GY Q F+F YS R GT  + M +      K +R+  L     E  ++   A VGQ + VL
Sbjct: 352 GYMQLFTFIYSKRTGTKAAEMPDPTPRKEKTDRMTRLLATQDEIAMALVKAQVGQTVRVL 411

Query: 418 IEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
           +E  G+ +G L GR     +V   +    +G    V +T  + + L GE+
Sbjct: 412 VEGFGRNEGTLSGRLDNNLTVEFAADPALLGSYATVHLTGARATVLLGEV 461


>gi|50955210|ref|YP_062498.1| hypothetical protein Lxx15990 [Leifsonia xyli subsp. xyli str.
           CTCB07]
 gi|81390772|sp|Q6AE03|MIAB_LEIXX RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|50951692|gb|AAT89393.1| conserved hypothetical protein [Leifsonia xyli subsp. xyli str.
           CTCB07]
          Length = 535

 Score =  429 bits (1103), Expect = e-118,   Method: Composition-based stats.
 Identities = 161/465 (34%), Positives = 253/465 (54%), Gaps = 19/465 (4%)

Query: 10  VAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNT 69
           V       V +    + + V+++GCQMNV+DS R+     + GY    + ++AD++V+NT
Sbjct: 9   VVPRSEAAVGEDGRARTYEVRTFGCQMNVHDSERLSGSLEAAGYVPA-NGEEADIVVINT 67

Query: 70  CHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG 129
           C +RE A  K+Y  LG + ++K         + + V GC+AQ +   IL ++P V+VV G
Sbjct: 68  CAVRENADNKLYGNLGHLASVKRRHA----GMQIAVGGCLAQKDKNVILEKAPWVDVVFG 123

Query: 130 PQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKF 189
                 LP LLERAR             + F           R    + +++I  GC+  
Sbjct: 124 THNMGALPRLLERARHNDAAEIEILEALETFPSTLPT----KRDSSFSGWVSISVGCNNT 179

Query: 190 CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSD 249
           CTFC+VP  RG E  R    ++ E + L+D G  E+TLLGQNVN++  +   G++  FS 
Sbjct: 180 CTFCIVPALRGKEKDRRPGDILAEVQALVDEGAVEVTLLGQNVNSYGVEF--GDRQAFSK 237

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
           LL +  +I+GL R+R+T+ HP   ++ +I A  +   +MP LH+P+QSGSDRIL+SM R 
Sbjct: 238 LLRAAGQIEGLERIRFTSPHPAAFTEDVIDAMAETPNVMPQLHMPLQSGSDRILRSMRRS 297

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369
           + + ++  I+DR+R+  P  AIS+D IVGFPGET++DF  T+ +V+   +A AF+F+YS 
Sbjct: 298 YRSEKFLGILDRVRAKLPGAAISTDIIVGFPGETEEDFLDTLRVVEAARFASAFTFQYSI 357

Query: 370 RLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKG-- 426
           R GTP + M  QV + V  ER   L        +  N+  +G+ +E+L+    G++    
Sbjct: 358 RPGTPAATMAGQVPKEVVQERYDRLIALQERISLEENEKLIGRDVELLVATGEGRKDADT 417

Query: 427 -KLVGRSPWLQSVVLN----SKNHNIGDIIKVRITDVKISTLYGE 466
            +L GR+   + V       S+    GD+  VR+T      L  +
Sbjct: 418 RRLSGRARDSRLVHFELPAGSEVPRPGDVALVRVTQAAPHYLIAD 462


>gi|282879448|ref|ZP_06288185.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella buccalis ATCC
           35310]
 gi|281298420|gb|EFA90852.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella buccalis ATCC
           35310]
          Length = 497

 Score =  429 bits (1103), Expect = e-118,   Method: Composition-based stats.
 Identities = 161/456 (35%), Positives = 257/456 (56%), Gaps = 20/456 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ ++++YGCQMNV DS  +  +    GYE  +  ++AD I LNTC +RE A  K+Y+ L
Sbjct: 50  KKLYIETYGCQMNVADSEVVASVMQMAGYEICDKEEEADAIFLNTCSVRENAENKIYNRL 109

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             +    ++  K+G +L++ V GC+A+   +++L      ++V GP +Y  LP+++ +A 
Sbjct: 110 DSL----HAERKKGRNLILGVLGCMAERVKDDLLDNH-HTDLVCGPDSYLNLPDMIAQAE 164

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G + +D + S  + ++ +        +  G   F++I  GC+ FC +C+VPYTRG E S
Sbjct: 165 TGNKAIDIELSKTETYKDVVPQRLLIGKIGG---FVSIMRGCNNFCHYCIVPYTRGRERS 221

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWR----------GKGLDGEKCTFSDLLYSL 254
           R +  ++ E R L D    EITLLGQNVN++           G+ +  E   F  LL  +
Sbjct: 222 RDVESILREVRDLRDKHCKEITLLGQNVNSYCFTIPEHLSATGETIPAETIDFPKLLRRV 281

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
           +     VR+R+T+SHP+DMSD  ++   +   +  ++HLPVQSGS++ILK MNR++T   
Sbjct: 282 AHEVPGVRIRFTSSHPKDMSDDTLRVIAEEPNVCKHIHLPVQSGSNKILKLMNRKYTVEW 341

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
           Y   I+ IR + PD  IS+D  VG+ GET++D + ++ L+  +GY  AF FKYS R GT 
Sbjct: 342 YMDRINAIRRIIPDCGISTDMFVGYHGETEEDHQQSLVLMRTVGYDSAFMFKYSERPGTY 401

Query: 375 GSN-MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRS 432
            S  + + V E  K  RL  +     E     N    G+  +VL+E   K    +L GR+
Sbjct: 402 ASKHLPDDVPEEEKIRRLNEMIHLQTELSAVSNKKDEGKTFDVLVEGFSKRSREQLCGRT 461

Query: 433 PWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
              + VV +  NH+IG+ ++VRI     +TL GE +
Sbjct: 462 EQNKMVVFDKVNHHIGETVRVRIVGSTSATLLGEAL 497


>gi|303236111|ref|ZP_07322713.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella disiens
           FB035-09AN]
 gi|302483693|gb|EFL46686.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella disiens
           FB035-09AN]
          Length = 443

 Score =  429 bits (1103), Expect = e-118,   Method: Composition-based stats.
 Identities = 156/450 (34%), Positives = 257/450 (57%), Gaps = 15/450 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ ++++YGCQMNV DS  +  +    GY+     ++AD I LNTC IRE A  K+Y+ L
Sbjct: 2   KKLYIETYGCQMNVADSEVVASVMKMAGYDVCEKEEEADAIFLNTCSIRENAENKIYNRL 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             +   K      G ++++ V GC+A+   ++++      N+V GP +Y  LPE++ R  
Sbjct: 62  ETLYAEKRK----GREVILGVLGCMAERVRKDLIENH-YANLVCGPDSYLNLPEMIARCE 116

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G   +D D S  + +  +     G NR  G   F++I  GC+ FC +C+VP+TRG E S
Sbjct: 117 NGHNAMDVDLSTTETYRDIVPQRIGGNRVSG---FVSIMRGCNNFCHYCIVPFTRGRERS 173

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC----TFSDLLYSLSEIKGL 260
           R +  ++ E + L D G  E+TLLGQNVN+  G   +G++     +F++LL  +++    
Sbjct: 174 RDVESILREVKDLHDRGFKEVTLLGQNVNS-YGLLPNGKRPENGTSFAELLRKVAQSVPD 232

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
           +R+R++TS+P DM++ ++ A  +   L  ++H P QSGS+++LK MNR++T  +Y + + 
Sbjct: 233 MRVRFSTSNPEDMTEDILHAVAEEPNLCNHIHFPAQSGSNKVLKDMNRKYTREDYLEKVA 292

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN-ML 379
            IR + P+  +++D  VG+  ET +D   T+ LV +  +  AF FKYS R GT  +  + 
Sbjct: 293 AIRRIIPNCGLTTDIFVGYHDETLEDQELTLSLVRECQFDSAFMFKYSERPGTYAAKHLP 352

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSV 438
           + V E  K  RL  L K   E     N    G+  ++LIE+  K    +L+GR+   ++V
Sbjct: 353 DNVSEEEKVRRLNELIKLQTEISAQQNKKDEGKEFDILIERFSKRSREQLMGRTEQNKAV 412

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           V+   NH+IG+ ++VRIT    +TL GE V
Sbjct: 413 VIPRGNHHIGETVRVRITSSSSATLIGEAV 442


>gi|289706447|ref|ZP_06502805.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Micrococcus luteus SK58]
 gi|289556942|gb|EFD50275.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Micrococcus luteus SK58]
          Length = 513

 Score =  429 bits (1103), Expect = e-118,   Method: Composition-based stats.
 Identities = 157/460 (34%), Positives = 246/460 (53%), Gaps = 20/460 (4%)

Query: 11  AHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC 70
           A    Q   +      + V+++GCQMNV+DS R+  +  S GY        ADL+V NTC
Sbjct: 10  APAPRQTSARPHEGLTYEVRTFGCQMNVHDSERISGLLESTGYAPAAEDAQADLVVFNTC 69

Query: 71  HIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGP 130
            +RE A  ++Y  LG +R +K++       + + V GC+AQ +   I R++P V+VV G 
Sbjct: 70  AVRENADNRLYGNLGNLRAVKDAH----PGMQIAVGGCLAQKDQAAIQRKAPWVDVVFGT 125

Query: 131 QTYYRLPELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKF 189
                LP LLER+R      ++   S+E     L        R    + +++I  GC+  
Sbjct: 126 HNIGSLPVLLERSRHNAEAEIEILESLEVFPSTLPT-----KRDSTHSGWVSISVGCNNT 180

Query: 190 CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSD 249
           CTFC+VP  RG E  R   +++ E + L+D G  E+TLLGQNVN +  +   G++  F+ 
Sbjct: 181 CTFCIVPSLRGKEKDRRPGEILAEVQALVDAGAVEVTLLGQNVNTYGVEF--GDRGAFAK 238

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
           LL +  +I+GL R+R+T+ HP   +D +I A  +   +MP LH+P+QSGSD +LK+M R 
Sbjct: 239 LLRACGQIEGLERVRFTSPHPAAFTDDVIDAMAETPNVMPQLHMPLQSGSDTVLKAMRRS 298

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369
           + +  +  I++++R   P  AI++D IVGFPGET++DF+ TM +V+   ++ AF+F+YS 
Sbjct: 299 YRSKRFLGILEKVRERIPHAAITTDIIVGFPGETEEDFQDTMRVVEASRFSSAFTFQYSI 358

Query: 370 RLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG----KEK 425
           R GTP   M +QV + V  ER   L               VG   E+L+         E+
Sbjct: 359 RPGTPAGEMADQVPKAVVQERYERLVALQDRISAEEMATLVGTRQELLVTADSGTKAAER 418

Query: 426 GKLVGRSPWLQSVVLN----SKNHNIGDIIKVRITDVKIS 461
           G+L GR+   + V  +    +     GD + V +T+    
Sbjct: 419 GRLSGRARDNRLVHFSVPAGAPTPRPGDFVSVTVTEAHPF 458


>gi|315656851|ref|ZP_07909738.1| tRNA 2-methylthioadenine synthetase [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
 gi|315492806|gb|EFU82410.1| tRNA 2-methylthioadenine synthetase [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
          Length = 498

 Score =  429 bits (1103), Expect = e-118,   Method: Composition-based stats.
 Identities = 161/463 (34%), Positives = 258/463 (55%), Gaps = 30/463 (6%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDD------------ADLIVLNTC 70
            P+ + VK+ GCQMN +DS RM  +  + G+  V  +              ADL+VLNTC
Sbjct: 3   TPRTYLVKTLGCQMNEHDSERMAGLLDAAGWVPVAEVPQKAARATNAGDGGADLVVLNTC 62

Query: 71  HIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGP 130
            +RE A  K+Y  LG++ ++K    +    +++ V GC AQ EG +I+ R+P V+ V G 
Sbjct: 63  SVREAAGTKLYGHLGQLADVK----RNRPGMMIAVGGCFAQQEGSKIIDRAPWVDAVFGT 118

Query: 131 QTYYRLPELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKF 189
                LP LL+RA   +   V+ + S++     L +     +R+   +A+++I  GC+  
Sbjct: 119 HNIDALPVLLKRAEHNQEAAVEIEESLKVFPSVLPV-----HRQSPASAWVSISVGCNNT 173

Query: 190 CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSD 249
           CTFC+VP  RG E  R+ + +V E + ++D G  E+TLLGQNVN++      G +  F+D
Sbjct: 174 CTFCIVPSLRGRERDRNPADIVAEVKAVVDAGALEVTLLGQNVNSYGMSF--GRRGAFAD 231

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
           LL  + +  GL RLR+T+ HP   ++ +I A  +   +MP LH P+QSGSDRIL+ M R 
Sbjct: 232 LLREVGKTPGLERLRFTSPHPAAFTEEVIAAMAETPTVMPSLHFPLQSGSDRILRQMRRS 291

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369
           + +  + +I+  +RS  P+ AI++D IVGFPGET+ DF+ T+D++ +  +  AF+F YS 
Sbjct: 292 YRSERFLRILREVRSAIPEAAITTDVIVGFPGETEADFQDTLDVLSEARFQAAFTFIYSR 351

Query: 370 RLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK---G 426
           R GTP ++  +QVD  V A+R   L +   +  +  N+   G+I+EVL+   G++     
Sbjct: 352 RPGTPAADRDDQVDPEVVAQRYQRLLELQEKITLEENEKQEGRIVEVLVTAGGRKDEATA 411

Query: 427 KLVGRSPWLQSVVL---NSKNHNIGDIIKVRITDVKISTLYGE 466
           ++ GR+   + V            GD + VR+T      L  +
Sbjct: 412 RMSGRAQDNRLVHFAVPQGIKVRPGDFVTVRVTHGAPHHLVAD 454


>gi|163753931|ref|ZP_02161054.1| 2-methylthioadenine synthetase [Kordia algicida OT-1]
 gi|161326145|gb|EDP97471.1| 2-methylthioadenine synthetase [Kordia algicida OT-1]
          Length = 481

 Score =  428 bits (1102), Expect = e-118,   Method: Composition-based stats.
 Identities = 161/459 (35%), Positives = 250/459 (54%), Gaps = 22/459 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ +++SYGCQMN  DS  +  +   +G+   N +++ADL+++NTC IR+KA + V   L
Sbjct: 24  RKLYIESYGCQMNFADSEVVASILAKEGFNTTNRLEEADLVLVNTCSIRDKAEQTVRKRL 83

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            +   +K    +    + V V GC+A+    + L    IV++VVGP  Y  LP L++   
Sbjct: 84  EKYNAVK----RHNPKMKVGVLGCMAERLKSKFLEEEKIVDMVVGPDAYKDLPNLIQEID 139

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G+  V+   S E+ +  +S V        G+ A ++I  GCD  CTFCVVP+TRG E S
Sbjct: 140 DGRNAVNVVLSKEETYGDISPVRLN---TNGINALVSITRGCDNMCTFCVVPFTRGRERS 196

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNA--WRGKGL--DGEKCT---------FSDLL 251
           R    +++E ++L D    EITLLGQNV++  W G GL  D +K +         F+ LL
Sbjct: 197 RDPQSILEEIQELSDKNFKEITLLGQNVDSYLWYGGGLKKDFDKASEMQKATAVDFAKLL 256

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
             ++     +RLR++TS+P+DM + +         +  ++HLPVQSGS+RILK MNR HT
Sbjct: 257 DMVATKFPKLRLRFSTSNPQDMHESVFHVMAKHRNICKHIHLPVQSGSNRILKEMNRLHT 316

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
             EY  +ID+I+ + P   +S D I GFP ET++D + T+ L++ + Y   + F YS R 
Sbjct: 317 REEYFALIDKIQEILPGCGVSQDLIAGFPTETEEDHQDTLSLMEYVKYDFGYMFTYSERP 376

Query: 372 GTPG-SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLV 429
           GT     M + V E  K  RL  + +  R+       + +  + EVLIE   K+     +
Sbjct: 377 GTMAGRKMEDDVPEATKKRRLAEIIELQRKHSAFRTKSHLNTVQEVLIEGTSKKSDEHWM 436

Query: 430 GRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           GR+      V   +N+  GD + V+I D   +TL GE +
Sbjct: 437 GRTSRNTVTVFPKENYKPGDFVNVKIYDCTSATLIGEAI 475


>gi|50758889|ref|XP_417464.1| PREDICTED: hypothetical protein [Gallus gallus]
          Length = 562

 Score =  428 bits (1102), Expect = e-118,   Method: Composition-based stats.
 Identities = 157/478 (32%), Positives = 250/478 (52%), Gaps = 38/478 (7%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + ++++YGCQMNV D+     +    GY R    D+AD+I+L TC +R+KA + +++ L 
Sbjct: 76  KVYLETYGCQMNVNDTEIAWAILQKSGYTRTKEADEADVILLVTCSVRDKAEQTIWNRLQ 135

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            ++ LK  R +    L + + GC+A+   EEIL R  +V++V GP  Y  LP LL  A  
Sbjct: 136 HLKALKARRHQACLPLRIGILGCMAERLKEEILHREKLVDIVAGPDAYRDLPRLLAMAES 195

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G++  +   S+++ +  +  V        G TAF++I  GCD  C++C+VP+TRG E SR
Sbjct: 196 GQQAANVLLSLDETYADILPVQTSAG---GKTAFVSIMRGCDNMCSYCIVPFTRGRERSR 252

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG---------------------LDGEK 244
            ++ ++ E + L D GV E+TLLGQNVN++R                             
Sbjct: 253 PIASILQEVKMLSDQGVKEVTLLGQNVNSFRDMSEVQFQSAAAPVLSRGFSTVYKTKPGG 312

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304
             F+ LL  +S I   +R+R+T+ HP+D  D +++   +   +   LHLP QSGS R+L+
Sbjct: 313 LRFAHLLDQVSRIDPEMRIRFTSPHPKDFPDEVLQLIQERHNICKQLHLPAQSGSTRVLE 372

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
           +M R +T   Y +++  +R+  P +++SSDFI GF GET++D + T+ L+ ++ Y   F 
Sbjct: 373 AMRRGYTREAYLELVQHVRNTIPGVSLSSDFIAGFCGETEEDHQQTVSLLREVRYNIGFL 432

Query: 365 FKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK 423
           F YS R  T     + + V  +VK  RL  L    RE+    N+A VGQ   VL+E   K
Sbjct: 433 FAYSMRQKTRAYHRLQDDVPADVKQRRLEELITVFREEAARANEAMVGQSQLVLVEGPSK 492

Query: 424 EK-GKLVGRSPWLQSVVLNSKN------------HNIGDIIKVRITDVKISTLYGELV 468
               +L GR+     V+    +               GD + V++T     TL G L+
Sbjct: 493 RSASELCGRNDGNIKVIFPDADTEDAGGCKALVRAQPGDYVLVKVTSASSQTLKGVLL 550


>gi|283458476|ref|YP_003363102.1| 2-methylthioadenine synthetase [Rothia mucilaginosa DY-18]
 gi|283134517|dbj|BAI65282.1| 2-methylthioadenine synthetase [Rothia mucilaginosa DY-18]
          Length = 504

 Score =  428 bits (1102), Expect = e-118,   Method: Composition-based stats.
 Identities = 155/464 (33%), Positives = 253/464 (54%), Gaps = 22/464 (4%)

Query: 13  MVSQIVDQCIVP----QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLN 68
           M S + D    P    + + V+++GCQMNV+DS RM  +  + GY R       DL+V N
Sbjct: 1   MTSTLSDSAQTPETSPRTYEVRTFGCQMNVHDSERMSGLLEANGYVRAEEGTQPDLVVFN 60

Query: 69  TCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVV 128
           TC +RE A+ ++Y  LG++  +K +       + + V GC+AQ + + I+ ++P V+VV 
Sbjct: 61  TCAVRENASNRLYGNLGQLAPVKRAHK----GMQIAVGGCLAQKDQDAIIEKAPWVDVVF 116

Query: 129 GPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
           G      LP LLERAR             + F           R    + +++I  GC+ 
Sbjct: 117 GTHNIGALPTLLERARHNHEAQAELLESLEVFPSTLPT----KRDHVYSGWVSISVGCNN 172

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS 248
            CTFC+VP  RG E  R    ++ E + L+D+G  E+TLLGQNVN++  +   G++  FS
Sbjct: 173 TCTFCIVPSLRGKEKDRRPGDILAEVQALVDDGAIEVTLLGQNVNSYGVEF--GDRQAFS 230

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
            LL +  EI+GL R+R+T+ HP   +D +I A  +   +MP LH+P+QSGSD++LK M R
Sbjct: 231 KLLRACGEIEGLERVRFTSPHPAMFTDDVIDAMAETPNVMPVLHMPLQSGSDKVLKDMRR 290

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
            + + ++  I++++R   P+  I++D IVGFPGET++DF+ T+ +V++  ++ AF+F+YS
Sbjct: 291 SYRSKKFLNILEKVRERIPNAVITTDIIVGFPGETEEDFQDTLKVVEQARFSSAFTFQYS 350

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE----KHGKE 424
            R GTP + M  Q+ + V  ER   L           N   +G+ +E+++     +  ++
Sbjct: 351 IRPGTPAATMENQIPKEVVQERYERLIALQDRIAGEENRKQLGKTVELMVVAEAGRKAEQ 410

Query: 425 KGKLVGRSPWLQSVVLNSKN----HNIGDIIKVRITDVKISTLY 464
             +L GR P  + V  +          GD++ V IT+     L 
Sbjct: 411 THRLSGRGPDQRLVHFSVPEGCETPRPGDMVTVPITEAGSFHLI 454


>gi|283797908|ref|ZP_06347061.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Clostridium sp. M62/1]
 gi|291074375|gb|EFE11739.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Clostridium sp. M62/1]
 gi|295091886|emb|CBK77993.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Clostridium cf.
           saccharolyticum K10]
          Length = 483

 Score =  428 bits (1102), Expect = e-118,   Method: Composition-based stats.
 Identities = 167/446 (37%), Positives = 259/446 (58%), Gaps = 16/446 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
            F ++++GCQMN +DS ++E +    G+ + ++ ++ADL++ NTC +RE A ++VY  LG
Sbjct: 47  TFHIETFGCQMNAHDSEKLEGILLEAGFVKTDT-EEADLVLYNTCTVRENANQRVYGRLG 105

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELL-ER 142
            + +LK    K+   +L+ + GC+ Q +   E+I +    V+V+ G    Y+L ELL  R
Sbjct: 106 YLNSLK----KKNPRMLIGLCGCMMQEDQVVEKIKKTYRFVDVIFGTHNIYKLAELLFAR 161

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
              GK V+D     +   E L        RK    + + I  GC+ FC++C+VPY RG E
Sbjct: 162 LHTGKMVIDIWKDTDKIVEDLP-----SERKYPFKSGVNIMFGCNNFCSYCIVPYVRGRE 216

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR    ++ E   L+ +GV E+ LLGQNVN+  GK L  E  TF++LL  + +I+GL R
Sbjct: 217 RSRRPEDIIKEIEGLVADGVVEVMLLGQNVNS-YGKNLP-EPITFAELLRRVEQIEGLER 274

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+ TSHP+D+SD LI+   D   +  +LHLP+QSGS RIL  MNRR+T  +Y  + ++I
Sbjct: 275 IRFMTSHPKDLSDELIEVMRDSKKICRHLHLPLQSGSSRILGQMNRRYTKEQYLALAEKI 334

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           ++  PDI++++D IVGFPGET +DF  T+D+V K+ Y  AF+F YS R GTP + M  QV
Sbjct: 335 KTAIPDISLTTDIIVGFPGETKEDFEETLDVVRKVRYDSAFTFIYSKRTGTPAAVMENQV 394

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRSPWLQSVVLN 441
            E+V  ER   L  +++      +   V  + +VL+E+     +G + GR     +V   
Sbjct: 395 PEDVIKERFDRLLSEVQRISNEISGRDVHTVQKVLVEEPDTHAEGMVTGRLSNNITVHFE 454

Query: 442 SKNHNIGDIIKVRITDVKISTLYGEL 467
                IG I+ V + + K     G+L
Sbjct: 455 GSRELIGKIVDVYLEESKGFYYMGKL 480


>gi|240144034|ref|ZP_04742635.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Roseburia intestinalis
           L1-82]
 gi|257203960|gb|EEV02245.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Roseburia intestinalis
           L1-82]
          Length = 496

 Score =  428 bits (1102), Expect = e-118,   Method: Composition-based stats.
 Identities = 168/466 (36%), Positives = 254/466 (54%), Gaps = 26/466 (5%)

Query: 15  SQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIRE 74
            Q+ ++   P  F V ++GCQMN  DS ++  +    GY      ++AD ++ NTC +RE
Sbjct: 41  RQLSEEKGSPLTFHVSTFGCQMNARDSEKLVGILEKIGYVE-EDSEEADFVIYNTCTVRE 99

Query: 75  KAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQ--AEGEEILRRSPIVNVVVGPQT 132
            A  KVY  LG +    N   K+   +++ + GC+ Q     E+I +    VN++ G   
Sbjct: 100 NANNKVYGRLGYL----NGFQKKNPFMMIGLCGCMMQEPTVVEKIKQSYRFVNLIFGTHN 155

Query: 133 YYRLPELLERARFGK-----------RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLT 181
            Y+  EL+  A                 +D     +   E L +      RK    + + 
Sbjct: 156 IYKFAELIVTALENSYSEHAAGHGTSMTIDIWKDTDKIVEDLPV-----ERKYSFKSGVN 210

Query: 182 IQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD 241
           I  GC+ FC++C+VPY RG E SR   +++ E  +L  +GV EI LLGQNVN+  GK L+
Sbjct: 211 IMFGCNNFCSYCIVPYVRGRERSREPKEIIREVERLAADGVVEIMLLGQNVNS-YGKNLE 269

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
            +  TF+ LL  + ++ G+ R+R+ TSHP+D+SD LI+   +   +  +LHLP+QSGS R
Sbjct: 270 -QPMTFAQLLQEIEKVDGIERIRFMTSHPKDLSDDLIEVMKNSKKICKHLHLPLQSGSSR 328

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
           ILK MNRR+    Y +++D+IR+  PDIA+++D IVGFPGET++DF  TMD+V K+ Y  
Sbjct: 329 ILKLMNRRYDKEHYLELVDKIRAAVPDIALTTDIIVGFPGETEEDFEETMDVVRKVRYDS 388

Query: 362 AFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKH 421
           AF+F YS R GTP + M +Q+ E+V   R   L K+++        A  GQ + VLIE+ 
Sbjct: 389 AFTFIYSKRTGTPAAVMEDQIPEDVIKARFDRLLKEVQTISAEKAGALTGQTLPVLIEEK 448

Query: 422 GKEKGKLV-GRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGE 466
            ++   LV GR      V L      IG I+ V++ + K     GE
Sbjct: 449 NEQDASLVTGRLSNNSVVHLPGTEDMIGKIVDVKLLECKGFYYMGE 494


>gi|28572773|ref|NP_789553.1| hypothetical protein TW627 [Tropheryma whipplei TW08/27]
 gi|81629788|sp|Q83HG3|MIAB_TROW8 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|28410906|emb|CAD67291.1| conserved hypothetical protein [Tropheryma whipplei TW08/27]
          Length = 470

 Score =  428 bits (1102), Expect = e-118,   Method: Composition-based stats.
 Identities = 162/446 (36%), Positives = 251/446 (56%), Gaps = 16/446 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
            + V++YGCQMNV+DS R+  +   +GY +  S DDAD++VLNTC +RE A  + Y  LG
Sbjct: 2   TYTVRTYGCQMNVHDSERIAGVLEDEGYVKSGS-DDADVVVLNTCAVRENADNRFYGNLG 60

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           ++   KN+    G    + V GC+AQ +  +I  ++P V+VV G      LP LL R+R 
Sbjct: 61  QLLQKKNN----GRIRQIAVGGCLAQKDRHKIFEKAPWVDVVFGTHNLGSLPALLRRSRH 116

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            K          + F     V     R+   +A+++I  GC+  CTFC+VP  RG E  R
Sbjct: 117 NKTAEIEIKDFLETFPSSLPVR----RESNYSAWVSISVGCNNTCTFCIVPSLRGKERDR 172

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
               ++ E   L+  GV E+TLLGQNVN +  +   G++  F+ LL     I+GL RL++
Sbjct: 173 RPGDILAEISALVSEGVLEVTLLGQNVNTYGVEF--GDRSAFASLLRKAGAIEGLERLKF 230

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
           T+ HP   +  +I A  D   ++P LH+P+QSGSDRIL++M R + A ++ +II   R+ 
Sbjct: 231 TSPHPAAFTSDVIDAMHDTQAVLPQLHMPLQSGSDRILRAMRRSYRAGKFLKIISEARNK 290

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P+IAI++D IVGFPGET++DF+ T++LV ++ +A AF+F+YSPR GTP ++M  Q+  +
Sbjct: 291 IPNIAITTDIIVGFPGETEEDFQDTLNLVAEVRFASAFTFQYSPRPGTPAASMPNQIPGD 350

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE----KGKLVGRSPWLQSVVLN 441
           +  ER   L        +  N   +G+ +E+L+   G++      +  GR+P  + V  +
Sbjct: 351 IVQERYDRLLDLQNRIALEENRKLIGKEVELLVTVGGRKDSMLDNRYTGRTPCGRLVHFS 410

Query: 442 S-KNHNIGDIIKVRITDVKISTLYGE 466
                  GD   V+I       L G+
Sbjct: 411 CLHQLRPGDFATVKIIYAAPYHLIGD 436


>gi|218281313|ref|ZP_03487801.1| hypothetical protein EUBIFOR_00366 [Eubacterium biforme DSM 3989]
 gi|218217498|gb|EEC91036.1| hypothetical protein EUBIFOR_00366 [Eubacterium biforme DSM 3989]
          Length = 477

 Score =  428 bits (1102), Expect = e-118,   Method: Composition-based stats.
 Identities = 172/461 (37%), Positives = 266/461 (57%), Gaps = 19/461 (4%)

Query: 12  HMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCH 71
             V++++ +    + +F+ +YGCQ N  DS  +  +    G+    + + +D+I++NTC 
Sbjct: 32  PEVARMMGRG---KTYFISTYGCQANERDSETLAGILDELGFTPNETAEGSDVIIINTCA 88

Query: 72  IREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVG 129
           IR+ A EKV   +G  + L     +E  DL++ V GC+AQ EG  E +L + P V ++ G
Sbjct: 89  IRQNAEEKVLGEIGNFKRL----YRENKDLIIGVCGCMAQEEGLVETLLTKYPQVRLLFG 144

Query: 130 PQTYYRLPELLERARF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
                 LP +L    F GK+VV       + +E L +     +R     A++ I  GCDK
Sbjct: 145 THNIQELPSMLYSCMFEGKKVVKIYSKEGEVYENLPV-----HRFGTFKAWVNIMYGCDK 199

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS 248
           FCT+C+VPYTRG + SR +S+++ E ++L D G  EITLLGQNVNA  GK +D E+  F+
Sbjct: 200 FCTYCIVPYTRGKQRSRKMSEILKEVQELKDEGYKEITLLGQNVNA-YGKDMDNEQ-DFA 257

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
            LL  +++I G+ R+R+TTSHP D S+ +I      D +MP++HLP+QSG D +LK M R
Sbjct: 258 TLLEEVAKI-GIPRVRFTTSHPWDFSEQMIDVIAKYDNIMPFIHLPLQSGDDDVLKLMGR 316

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
           R+T   Y  + D+I +  P++A+S+D IVGFP ETD+ F  T+D+V    Y  AF+F +S
Sbjct: 317 RYTKESYLALYDKIINTIPNVAVSTDIIVGFPNETDEQFEHTLDVVRYCKYDNAFTFIFS 376

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGK 427
            R GTP S M + +D   K +RL  L K   +  +  N A +G+ + VL++    K++  
Sbjct: 377 ARPGTPASRMHDSIDMETKRKRLARLNKTWNDLALEKNKAYIGRTVTVLVDGPSKKDENV 436

Query: 428 LVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
             G +   + V    +N   GD ++V+I D K  +L G  V
Sbjct: 437 YSGYTDTQKLVNFKGENLQAGDFVEVKILDAKTFSLDGVAV 477


>gi|229025211|ref|ZP_04181635.1| hypothetical protein bcere0029_35140 [Bacillus cereus AH1272]
 gi|228736144|gb|EEL86715.1| hypothetical protein bcere0029_35140 [Bacillus cereus AH1272]
          Length = 425

 Score =  428 bits (1102), Expect = e-118,   Method: Composition-based stats.
 Identities = 173/429 (40%), Positives = 253/429 (58%), Gaps = 15/429 (3%)

Query: 44  MEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLV 103
           M  +F + GYE   S +DAD+++LNTC IRE A  KV+  LG +++LK    +   DLL+
Sbjct: 1   MAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGHLKSLK----RRNPDLLI 56

Query: 104 VVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVE-DKF 160
            V GC++Q E    +I++++  V++V G    +RLP +L+ A F K  V   +S E D  
Sbjct: 57  GVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKETVVEVWSKEGDVI 116

Query: 161 ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN 220
           E L  V     R+  + A++ I  GCDKFCT+C+VPYTRG E SR    ++ E R L  N
Sbjct: 117 ENLPKV-----RRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEIRHLAAN 171

Query: 221 GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKA 280
           G  EITLLGQNVNA  GK  +  +    DL+  L ++  + R+R+TTSHPRD  D LI+ 
Sbjct: 172 GYKEITLLGQNVNA-YGKDFEDFEYGLGDLMDELRKVD-IARIRFTTSHPRDFDDHLIEV 229

Query: 281 HGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFP 340
            G    L+ ++HLPVQSGS  +LK M R+++   Y +++ +I+   P+   ++D IVGFP
Sbjct: 230 LGKAGNLVEHIHLPVQSGSTEMLKIMARKYSREHYLELVRKIKEAIPNAVFTTDIIVGFP 289

Query: 341 GETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLRE 400
            ETD+ F  TM L  ++G+  AF+F YSPR GTP + M + V   VK ERL  L   +  
Sbjct: 290 NETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERLQRLNTLVNT 349

Query: 401 QQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVLNSKNHNIGDIIKVRITDVK 459
             +  N+   GQI+EVL++   K   + L G +   + V   +    IG ++KV++T+ K
Sbjct: 350 LAIEKNNRYKGQIVEVLVDGESKNNPEVLAGYTRTNKLVNFVASKSLIGQLVKVKVTEAK 409

Query: 460 ISTLYGELV 468
             +L GELV
Sbjct: 410 TWSLNGELV 418


>gi|146299610|ref|YP_001194201.1| RNA modification protein [Flavobacterium johnsoniae UW101]
 gi|229890535|sp|A5FIU2|MIAB_FLAJ1 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|146154028|gb|ABQ04882.1| RNA modification enzyme, MiaB family [Flavobacterium johnsoniae
           UW101]
          Length = 481

 Score =  428 bits (1101), Expect = e-118,   Method: Composition-based stats.
 Identities = 164/459 (35%), Positives = 252/459 (54%), Gaps = 22/459 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F++SYGC MN  DS  +  +    GY   + +++ADL+++NTC IR+KA + +   L
Sbjct: 24  KKLFIESYGCAMNFSDSEVVASILSDGGYNTTSVLEEADLVLVNTCSIRDKAEQTIRKRL 83

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            +   +K    +    + V V GC+A+    + L    IV++VVGP  Y  LP LL    
Sbjct: 84  EKYNAVK----RTNPKMKVGVLGCMAERLKSQFLEEEKIVDLVVGPDAYKDLPNLLAEVE 139

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G+  ++   S E+ +  +S V        G+TA ++I  GCD  CTFCVVP+TRG E S
Sbjct: 140 EGRDAINVILSKEETYGDISPVRLM---SNGITALVSITRGCDNMCTFCVVPFTRGRERS 196

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK-------------CTFSDLL 251
           R    ++ E + L   G  EITLLGQNV+++   G   +K               F  LL
Sbjct: 197 REPQSIMAEIQDLWSKGFKEITLLGQNVDSYLWYGGGLKKDFVNASEMQKATAVDFDQLL 256

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
             ++     +R+R++TS+P+DM + ++        +  ++HLPVQSGS+RILK MNR H+
Sbjct: 257 EMVAVGFPKMRIRFSTSNPQDMHESILHVMAKYPNICKHIHLPVQSGSNRILKEMNRLHS 316

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
             EY  +ID+IR++ PD +IS D I GFP ET+ D + TM L++ + Y   + + YS R 
Sbjct: 317 REEYMALIDKIRAIVPDASISQDMIAGFPTETEQDHQDTMSLMEYVKYNFGYMYSYSERP 376

Query: 372 GTPG-SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLV 429
           GT     M + V+E  KA RL  +    ++     ++  VG+ +EVL+EK  K+ K +  
Sbjct: 377 GTLAGRKMKDDVEEETKARRLQEIVDLQQKHAWFRSEEFVGKTVEVLVEKVSKKSKDEFS 436

Query: 430 GRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           GR+    +VV   +N+ IGD + V+IT     TL GE V
Sbjct: 437 GRNSQSITVVFPKENYKIGDFVNVKITSCTSGTLKGEAV 475


>gi|163787659|ref|ZP_02182106.1| hypothetical protein FBALC1_03932 [Flavobacteriales bacterium
           ALC-1]
 gi|159877547|gb|EDP71604.1| hypothetical protein FBALC1_03932 [Flavobacteriales bacterium
           ALC-1]
          Length = 481

 Score =  428 bits (1101), Expect = e-118,   Method: Composition-based stats.
 Identities = 167/458 (36%), Positives = 252/458 (55%), Gaps = 22/458 (4%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
            ++ F++SYGC MN  DS  +  +   QG+    ++++ADL+++NTC IR+KA + V   
Sbjct: 23  KRKLFIESYGCAMNFSDSEIVASILSDQGFNTTKNLEEADLVLVNTCSIRDKAEQTVRKR 82

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           L +   +K    +    + V V GC+A+    + L    IV++VVGP  Y  LP LL   
Sbjct: 83  LQQYNVVK----RTNPKMKVGVLGCMAERLKTKFLEEEKIVDLVVGPDAYKDLPNLLAEV 138

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             G+  ++   S E+ +  +S V        GVTAF++I  GCD  CTFCVVP+TRG E 
Sbjct: 139 DEGRDAINVILSKEETYGDISPVRLN---TNGVTAFVSITRGCDNMCTFCVVPFTRGRER 195

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNA--WRGKGL--DGEKCT---------FSDL 250
           SR    +++E   L   G  EITLLGQNV++  W G GL  D +K T         F+ L
Sbjct: 196 SRDPQSIIEEINDLWAKGFKEITLLGQNVDSYLWYGGGLKKDFDKATDLQKATAVNFASL 255

Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
           L   ++ +  +R+R++TS+P+D +  +I+     D +  ++HLPVQSGSDRILK MNR H
Sbjct: 256 LELAAKAQPKMRIRFSTSNPQDFTLDVIETMSKYDNICKHIHLPVQSGSDRILKEMNRLH 315

Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370
           T  EY ++ID IR + P+ +IS D I GFP E + D + T+ L++ + Y   + F YS R
Sbjct: 316 TREEYFELIDNIRRIIPECSISQDLIAGFPTENEQDHQDTLSLMEYVKYNFGYMFTYSER 375

Query: 371 LGTPG-SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KL 428
            GT     M + V E  K  RL  + +  R+         +   +E+LIEK  K+   + 
Sbjct: 376 PGTMAGRKMEDDVPEETKKRRLNDIVQLQRKHSDFRTRQHLNTTVEILIEKSSKKSDLQW 435

Query: 429 VGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGE 466
            GR+      V   +++ +GD++ V ITD   +TL GE
Sbjct: 436 SGRTSDNTVAVFPKEDYKVGDLVNVYITDCTSATLIGE 473


>gi|194044464|ref|XP_001928891.1| PREDICTED: CDK5 regulatory subunit-associated protein 1 [Sus
           scrofa]
          Length = 589

 Score =  428 bits (1101), Expect = e-118,   Method: Composition-based stats.
 Identities = 157/479 (32%), Positives = 256/479 (53%), Gaps = 38/479 (7%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ ++++YGCQMNV D+     +    GY R +++ +AD+I+L TC IREKA + +++ L
Sbjct: 102 RKVYLETYGCQMNVNDTEIAWSILQKNGYLRTSNLQEADVILLVTCSIREKAEQTIWNRL 161

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            +++ LK+ R++    L + + GC+A+   EEIL R  +V+++ GP  Y  LP LL  A 
Sbjct: 162 HQLKALKSKRLRSQVPLRIGILGCMAERLKEEILNREKMVDILAGPDAYRDLPRLLAVAE 221

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G++  +   S+++ +  +  V          +AF++I  GCD  C++C+VP+TRG E S
Sbjct: 222 SGQQAANVLLSLDETYADVLPVQTS---PSATSAFVSIMRGCDNMCSYCIVPFTRGRERS 278

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG---------------KGLDGEKCT--- 246
           R ++ +++E RKL + G+ E+TLLGQNVN++R                +G      T   
Sbjct: 279 RPVASILEEVRKLSEQGLKEVTLLGQNVNSFRDTSEVQFNNAVSTNLSRGFSSNYKTKQG 338

Query: 247 ---FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
              F+ LL  +S+I   +R+R+T+ HP+D  D +++   D D +   +HLP QSGS R+L
Sbjct: 339 GLRFAHLLDQVSQIDPEMRIRFTSPHPKDFPDEVLQLIHDRDNICKQIHLPAQSGSSRVL 398

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           ++M R ++   Y +++  IR   P +++SSDFI GF GET++D   T+ L+ ++ Y   F
Sbjct: 399 EAMRRGYSREAYVELVHHIRESIPGVSLSSDFIAGFCGETEEDHLQTVSLLQEVQYNMGF 458

Query: 364 SFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422
            F YS R  T     + + + E VK  RL  L    RE+    N   VG I  VL+E   
Sbjct: 459 LFAYSMRQKTRAYHRLKDDIPEEVKLRRLEELITVFREEATKANKTFVGCIQLVLVEGFS 518

Query: 423 KEKGK-LVGRSPWLQSVVLNSKN------------HNIGDIIKVRITDVKISTLYGELV 468
           K     L GR+     V+                    GD + V+IT     TL G ++
Sbjct: 519 KRSSTDLCGRNDGNLKVIFPDVELEDVTNSGLKVRAQPGDYVLVKITSASSQTLKGHVL 577


>gi|195953226|ref|YP_002121516.1| RNA modification enzyme, MiaB family [Hydrogenobaculum sp. Y04AAS1]
 gi|229890609|sp|B4U8S7|MIAB_HYDS0 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|195932838|gb|ACG57538.1| RNA modification enzyme, MiaB family [Hydrogenobaculum sp. Y04AAS1]
          Length = 435

 Score =  428 bits (1101), Expect = e-118,   Method: Composition-based stats.
 Identities = 163/442 (36%), Positives = 260/442 (58%), Gaps = 12/442 (2%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           ++F+K+YGCQMN+ DS +++ +  +QGYE     +DADL++LNTC IREK  +KV+S LG
Sbjct: 2   KYFIKTYGCQMNINDSEKIKGILQTQGYEPATREEDADLVILNTCTIREKPDQKVWSHLG 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            I+ LK+       ++ + V GC+AQ  G EI  + P +++V G +  + +P+LLE  + 
Sbjct: 62  EIKKLKS----INPNIKIGVCGCMAQRAGYEIASKMPFIDLVFGTKNIHHMPKLLEDVKV 117

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G R ++     E+      +      R     A++TI  GCDK CT+CVVP+TRG E SR
Sbjct: 118 GNRAIEI--LEEEDPSENILDSYPTVRDNSYCAYVTIMRGCDKECTYCVVPFTRGKERSR 175

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           +   ++DE + L+D+GV EI L+GQNV A  GK +D     F  LL ++S+I+G+ R+R+
Sbjct: 176 NPQSILDEVKSLVDSGVMEIHLIGQNVTA-YGKDID---YPFYKLLENISKIEGVKRIRF 231

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
           TT HP DM+D +I+   +L  ++ +LHLP Q+GSDRIL+ M R +T   Y   I+++++ 
Sbjct: 232 TTGHPIDMTDDIIETMANLPNMVNHLHLPFQAGSDRILELMKRNYTKAYYLNRIEKLKAK 291

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
             DI  S+D I+GFP ET++DF+ T+D+V  + + Q FSFKYS R  TP   M + + + 
Sbjct: 292 IKDITFSTDIIIGFPTETEEDFQHTLDVVQTVEFEQVFSFKYSKRPNTPAYYMEDDLTDE 351

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445
           +K +R+  L +  +             + +VL+E   K+    +GR+       + S   
Sbjct: 352 IKTDRIKRLLEIQKAITSKLMQRYKNTVQKVLVE--DKKGNTYIGRTTTNVWCNITSSQD 409

Query: 446 NIGDIIKVRITDVKISTLYGEL 467
            +G  ++V I      +L G +
Sbjct: 410 ILGKEVEVLIAKAGFQSLDGVV 431


>gi|325846562|ref|ZP_08169477.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
 gi|325481320|gb|EGC84361.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
          Length = 450

 Score =  428 bits (1101), Expect = e-118,   Method: Composition-based stats.
 Identities = 170/448 (37%), Positives = 262/448 (58%), Gaps = 17/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +++ + ++GCQMN +DS R+  +    GY   +  ++AD I+ NTC +RE A  K+Y  +
Sbjct: 16  KKYNITTFGCQMNEHDSERISYILEDLGYTLTDDRNEADFILFNTCLVRENAELKLYGQV 75

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAE--GEEILRRSPIVNVVVGPQTYYRLPELLER 142
             ++ LK        + ++ V+GC+ Q     E I ++   V+++ G +    LP+LL +
Sbjct: 76  SSLKKLKEE----NPEKIIAVSGCMMQTSVAREVIEKKHKEVDIIFGTKNINSLPDLLFK 131

Query: 143 A-RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
               G+RV+D         + +      YN K    A++ I  GCD FC++C+VP +RG 
Sbjct: 132 YLETGERVIDVSE------DNVKDDYVNYNSKNNFQAYVNIMTGCDNFCSYCIVPQSRGR 185

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR  S +++E   L++NG  EITLLGQNVN+  G   D    TF +LL   ++IKGL 
Sbjct: 186 EESRRPSHIIEEIENLVNNGYKEITLLGQNVNS-YGNKSDFN-VTFPELLEKCAQIKGLE 243

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           RLR+TTSHP+D+SD LI+   + D +  Y HLP+QSGSD++LK MNR++   +Y +   +
Sbjct: 244 RLRFTTSHPKDLSDDLIRVIKENDNICNYFHLPMQSGSDKVLKDMNRKYNKEQYLEKARK 303

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R   P+IAIS+D IVG+P ET++DF+ T+D+  K+G+  AF+FKYSPR  T  + + E 
Sbjct: 304 LREEIPNIAISTDIIVGYPTETEEDFQETLDVCRKVGFDTAFTFKYSPRPKTKAAKL-ET 362

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVL 440
           +DE +  +R   L   L       N   VG+++EVL+E   K  K  L GR+   + V +
Sbjct: 363 IDEKIVQDRFDRLLDTLYPVFNEKNKEYVGKVVEVLLESESKNNKNVLTGRTDTFKLVHV 422

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
            +    IG I+KV+ITD    T+ G LV
Sbjct: 423 EADKKLIGQIVKVKITDNTSFTISGHLV 450


>gi|28493577|ref|NP_787738.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Tropheryma
           whipplei str. Twist]
 gi|81437721|sp|Q83FT9|MIAB_TROWT RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|28476619|gb|AAO44707.1| unknown [Tropheryma whipplei str. Twist]
          Length = 470

 Score =  428 bits (1101), Expect = e-118,   Method: Composition-based stats.
 Identities = 162/446 (36%), Positives = 251/446 (56%), Gaps = 16/446 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
            + V++YGCQMNV+DS R+  +   +GY +  S DDAD++VLNTC +RE A  + Y  LG
Sbjct: 2   TYTVRTYGCQMNVHDSERIAGVLEDEGYVKSGS-DDADVVVLNTCAVRENADNRFYGNLG 60

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           ++   KN+    G    + V GC+AQ +  +I  ++P V+VV G      LP LL R+R 
Sbjct: 61  QLLQKKNN----GRIRQIAVGGCLAQKDRHKIFEKAPWVDVVFGTHNLGSLPALLRRSRH 116

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            K          + F     V     R+   +A+++I  GC+  CTFC+VP  RG E  R
Sbjct: 117 NKTAEIEIKDFLETFPSSLPVR----RESNYSAWVSISVGCNNTCTFCIVPSLRGKERDR 172

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
               ++ E   L+  GV E+TLLGQNVN +  +   G++  F+ LL     I+GL RL++
Sbjct: 173 RPGDILAEISALVSEGVLEVTLLGQNVNTYGVEF--GDRSAFASLLRKAGAIEGLERLKF 230

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
           T+ HP   +  +I A  D   ++P LH+P+QSGSDRIL++M R + A ++ +II   R+ 
Sbjct: 231 TSPHPAAFTSDVIDAMHDTQAVLPQLHMPLQSGSDRILRAMRRSYRAGKFLKIISEARNK 290

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P+IAI++D IVGFPGET++DF+ T++LV ++ +A AF+F+YSPR GTP ++M  Q+  +
Sbjct: 291 IPNIAITTDIIVGFPGETEEDFQDTLNLVAEVRFASAFTFQYSPRPGTPAASMPNQIPGD 350

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE----KGKLVGRSPWLQSVVLN 441
           +  ER   L        +  N   +G+ +E+L+   G++      +  GR+P  + V  +
Sbjct: 351 IVQERYERLLDLQNRIALEENRKLIGKEVELLVTVGGRKDSMLDNRYTGRTPCGRLVHFS 410

Query: 442 S-KNHNIGDIIKVRITDVKISTLYGE 466
                  GD   V+I       L G+
Sbjct: 411 CLHQLRPGDFATVKIIYAAPYHLIGD 436


>gi|254442609|ref|ZP_05056085.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Verrucomicrobiae
           bacterium DG1235]
 gi|198256917|gb|EDY81225.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Verrucomicrobiae
           bacterium DG1235]
          Length = 461

 Score =  428 bits (1101), Expect = e-117,   Method: Composition-based stats.
 Identities = 158/450 (35%), Positives = 263/450 (58%), Gaps = 10/450 (2%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R ++K+YGCQMN  DS ++      +GY  V++  DAD+++LNTC +R++A +K     G
Sbjct: 11  RVYIKTYGCQMNERDSEQVASSLRDRGYSIVDTEYDADVVLLNTCSVRDQAEQKAIGKAG 70

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE---R 142
            ++  K    K+  + L+ V GC+AQ  G E+  R P +++VVG Q ++R+P+ L+   +
Sbjct: 71  YLKKHK----KDNPNFLIGVMGCMAQNRGAELFDRLPDLDLVVGTQKFHRVPDHLDNMIQ 126

Query: 143 ARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           +  G+     +   + ++    + +     +K  V AF++I +GC+  C FC+VP TRG 
Sbjct: 127 SMNGQGPRPSSVLDLGEEAGSQNTIRDHIGKKGQVQAFVSIMQGCNMNCAFCIVPKTRGR 186

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD--GEKCTFSDLLYSLSEIKG 259
           E +R + ++VDE   L ++GV EITLLGQ V ++  +       K  F  LL  + EI G
Sbjct: 187 ERARPIQEIVDEVIGLAESGVKEITLLGQIVTSYGRRDFPVVNGKSPFVQLLEKIEEIPG 246

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           + R+R+T+ HPR     L++A+ DL  L  Y+HLP+Q+G ++ L++MNR +T   YR+I+
Sbjct: 247 IERIRFTSPHPRGFKQDLVEAYRDLSKLCEYVHLPLQAGCNKTLRAMNRPYTKERYREIV 306

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
           D +R++ P +  S+D IVGFPGET+ DF  T  + D I +  A+ FKYS R GTP   M 
Sbjct: 307 DSLRAMVPSMYFSTDIIVGFPGETEADFNETAAMFDDIAFDMAYIFKYSIRTGTPAETMP 366

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV 439
           +Q+ +  K  R   L   L +  ++ N+  VG   +VL+E   K+  K VG +   ++ +
Sbjct: 367 DQIPQEEKERRNQVLLDLLHKHSLARNEGLVGTTEQVLVEGPAKKGDKYVGHTRGWRNAI 426

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELVV 469
            ++    +G ++ ++I     ST+YG+LV+
Sbjct: 427 FDANERLVGQLVDLKIDRATASTVYGDLVL 456


>gi|315655228|ref|ZP_07908129.1| tRNA-I(6)A37 thiotransferase [Mobiluncus curtisii ATCC 51333]
 gi|315490483|gb|EFU80107.1| tRNA-I(6)A37 thiotransferase [Mobiluncus curtisii ATCC 51333]
          Length = 498

 Score =  428 bits (1101), Expect = e-117,   Method: Composition-based stats.
 Identities = 161/463 (34%), Positives = 256/463 (55%), Gaps = 30/463 (6%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDD------------ADLIVLNTC 70
            P+ + VK+ GCQMN +DS RM  +  + G+  V  +              ADL+VLNTC
Sbjct: 3   TPRTYLVKTLGCQMNEHDSERMAGLLDAAGWVPVAEVPQKAARATNAGDGGADLVVLNTC 62

Query: 71  HIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGP 130
            +RE A  K+Y  LG++ ++K    +    +++ V GC AQ EG +I+ R+P V+ V G 
Sbjct: 63  SVREAAGTKLYGHLGQLADVK----RNRPGMMIAVGGCFAQQEGSKIIDRAPWVDAVFGT 118

Query: 131 QTYYRLPELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKF 189
                LP LL+RA   +   V+ + S++     L       +R+   +A+++I  GC+  
Sbjct: 119 HNIDALPILLKRAEHNQEAAVEIEESLKVFPSVLP-----AHRQSPASAWVSISVGCNNT 173

Query: 190 CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSD 249
           CTFC+VP  RG E  R+ + +V E + ++D G  E+TLLGQNVN++      G +  F+D
Sbjct: 174 CTFCIVPSLRGRERDRNPADIVAEVKAVVDAGALEVTLLGQNVNSYGMSF--GRRGAFAD 231

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
           LL  + +  GL RLR+T+ HP   ++ +I A  +   +MP LH P+QSGSDRIL+ M R 
Sbjct: 232 LLREVGKTPGLERLRFTSPHPAAFTEEVIAAMAETPTVMPSLHFPLQSGSDRILRQMRRS 291

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369
           + +  + +I+  +RS  P  AI++D IVGFPGET+ DF+ T+D++ +  +  AF+F YS 
Sbjct: 292 YRSERFLRILREVRSAIPKAAITTDVIVGFPGETEADFQDTLDVLSEARFQAAFTFIYSR 351

Query: 370 RLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK---G 426
           R GTP ++  +QVD  V A+R   L +   +  +  N+   G+I+EVL+   G++     
Sbjct: 352 RPGTPAADRDDQVDPEVVAQRYQRLLELQEKITLEENEKQEGRIVEVLVTAGGRKDEATA 411

Query: 427 KLVGRSPWLQSVVL---NSKNHNIGDIIKVRITDVKISTLYGE 466
           ++ GR+   + V            GD + VR+T      L  +
Sbjct: 412 RMSGRAQDNRLVHFAVPQGVKVRPGDFVTVRVTHGAPHHLVAD 454


>gi|282880437|ref|ZP_06289144.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella timonensis
           CRIS 5C-B1]
 gi|281305540|gb|EFA97593.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella timonensis
           CRIS 5C-B1]
          Length = 451

 Score =  428 bits (1100), Expect = e-117,   Method: Composition-based stats.
 Identities = 162/457 (35%), Positives = 255/457 (55%), Gaps = 20/457 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F+++YGCQMNV DS  +  +    GYE     ++AD I LNTC +RE A  K+Y+ L
Sbjct: 2   KKLFIETYGCQMNVADSEVVASVMQMAGYELCEQEEEADAIFLNTCSVRENAENKIYNRL 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             +    ++  K+G +L++ V GC+A+   +++L      ++V GP +Y  LP+++ +A 
Sbjct: 62  DAL----HAERKKGRNLILGVLGCMAERVKDDLLNNH-HTDLVCGPDSYLNLPDMMAQAE 116

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G + +D + S  + ++ +        +  G   F++I  GC+ FC +C+VPYTRG E S
Sbjct: 117 TGNKAIDIELSKTETYKDVVPQRLMIGKVSG---FVSIMRGCNNFCHYCIVPYTRGRERS 173

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWR----------GKGLDGEKCTFSDLLYSL 254
           R +  ++ E R L D    EITLLGQNVN++           G+ +      F  LL  +
Sbjct: 174 RDIESILREVRDLRDKHYKEITLLGQNVNSYCFTVPERQLDNGETIAAHTIDFPQLLRRV 233

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
           +     +R+R+T+SHP+DMSD  +    +   +  ++HLPVQSGS++ILK MNR++T   
Sbjct: 234 AHEVPDIRIRFTSSHPKDMSDDTLHVIAEEPNVCKHIHLPVQSGSNKILKLMNRKYTVEW 293

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
           Y   I  I+ + PD  IS+D  VG+ GET++D + ++ L+  +GY  AF FKYS R GT 
Sbjct: 294 YMDRIRAIQRIIPDCGISTDIFVGYHGETEEDHQLSLQLMRTVGYDSAFMFKYSERPGTY 353

Query: 375 GSN-MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRS 432
            S  + + V E  K  RL  +     E     N    G+  EVL+E   K    +L GR+
Sbjct: 354 ASKHLPDNVPEEEKIRRLNEMIHLQTELSAISNKKDEGKEFEVLVEGFSKRSREQLCGRT 413

Query: 433 PWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
              + VVL+   H+IG+ ++VRIT    +TL+GE V 
Sbjct: 414 EQNKMVVLDKGKHHIGETVRVRITRSTSATLFGEEVT 450


>gi|148273204|ref|YP_001222765.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
 gi|229890480|sp|A5CSL5|MIAB_CLAM3 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|147831134|emb|CAN02086.1| putative methylthioadenine synthetase [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
          Length = 528

 Score =  428 bits (1100), Expect = e-117,   Method: Composition-based stats.
 Identities = 169/468 (36%), Positives = 261/468 (55%), Gaps = 21/468 (4%)

Query: 10  VAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNT 69
           +A  V         P+ + V++YGCQMNV+DS R+     + GY      + AD++V+NT
Sbjct: 4   LAEHVRDTPPAAERPRTYEVRTYGCQMNVHDSERLTGSLEAAGYVSAEGAE-ADIVVINT 62

Query: 70  CHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG 129
           C +RE A  K+Y  LG +  +K    +    + + V GC+AQ +   +L ++P V+VV G
Sbjct: 63  CAVRENADNKLYGNLGHLAGVK----RRHEGMQIAVGGCLAQKDRATVLEKAPWVDVVFG 118

Query: 130 PQTYYRLPELLERARF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
                 LP LLERAR  G+  ++   S+E     L        R    + +++I  GC+ 
Sbjct: 119 THNMGALPTLLERARHNGEAQLEILESLETFPSTLPT-----KRDEIASGWVSISVGCNN 173

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS 248
            CTFC+VP  RG E  R    ++ E + L+D+G  E+TLLGQNVN++  +   G++  F 
Sbjct: 174 TCTFCIVPALRGKEKDRRPGDILAEIQALVDDGAVEVTLLGQNVNSYGVEF--GDRQAFG 231

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
            LL +   I+GL R+R+T+ HP   +D +I A  +   +MP LH+P+QSGSDR+LK+M R
Sbjct: 232 KLLRAAGAIEGLERIRFTSPHPAAFTDDVIDAMAETPAVMPQLHMPLQSGSDRVLKAMRR 291

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
            + +  +  I+DR+R+  PD AI++D IVGFPGET++DF+ T+ +V+   ++ AF+F+YS
Sbjct: 292 SYRSERFLGILDRVRTRIPDAAITTDIIVGFPGETEEDFQETLRVVEAARFSSAFTFQYS 351

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKH-GKEKG- 426
            R GTP + M EQV  +V  ER   L           N   VG+ +EVL+  H G++ G 
Sbjct: 352 IRPGTPAATMEEQVPADVVKERYGRLTALQERISHEENQRVVGRTVEVLVSAHEGRKDGD 411

Query: 427 --KLVGRSPWLQSVVLN----SKNHNIGDIIKVRITDVKISTLYGELV 468
             ++ GR+   + V L+    S     GD ++V IT      L  + V
Sbjct: 412 TRRVTGRAQDGRLVHLDVPAGSGEPRPGDAVEVEITRAAPFHLIADSV 459


>gi|297571230|ref|YP_003697004.1| RNA modification enzyme, MiaB family [Arcanobacterium haemolyticum
           DSM 20595]
 gi|296931577|gb|ADH92385.1| RNA modification enzyme, MiaB family [Arcanobacterium haemolyticum
           DSM 20595]
          Length = 514

 Score =  428 bits (1100), Expect = e-117,   Method: Composition-based stats.
 Identities = 164/464 (35%), Positives = 268/464 (57%), Gaps = 33/464 (7%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDD------------ADLIVLNTCHI 72
           + + V++ GCQMNV+DS RM  +    G   V  + +            AD++V+NTC +
Sbjct: 11  KTYAVRTLGCQMNVHDSERMAGLLDQAGIVPVELVPEKAARATEAGDQGADVLVINTCSV 70

Query: 73  REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT 132
           RE AA K++  LG+++ +K++R     D+ + V GC+AQ   + I++R+P V+VV+G   
Sbjct: 71  RENAANKLFGHLGQLKAVKDAR----PDMQIAVGGCLAQQMRDGIVKRAPWVDVVLGTHN 126

Query: 133 YYRLPELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCT 191
              LP LLERAR  K+  V+ + S++     L       +R+    A+++I  GC+  CT
Sbjct: 127 LDVLPALLERARHNKKAAVEIEESLKVFPSTLPT-----HRESAYAAWVSISVGCNNTCT 181

Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLL 251
           FC+VP+ RG E  R   +++ E   ++  G  E+TLLGQNVN+  G G  G++  F+ LL
Sbjct: 182 FCIVPHLRGKERDRRPGEILSEVEAVVSEGAIEVTLLGQNVNS-YGVGF-GDRGAFAKLL 239

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
            +  +I GL R+R+T+ HP   +D +I A  +   +MP LH+P+QSGSDR+L++M R + 
Sbjct: 240 RACGDIDGLERVRFTSPHPAAFTDDVIDAMAETPNVMPTLHMPLQSGSDRVLRAMRRSYR 299

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
           + ++  I+DR+R   P+ AI++D IVGFPGET++DF+AT+D+V+K  +A AF+F YSPR 
Sbjct: 300 SAKFLGILDRVRERIPNAAITTDIIVGFPGETEEDFQATLDVVEKSRFASAFTFLYSPRP 359

Query: 372 GTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG----K 427
           GTP ++M +QV  +V +ER   L        +  N   +G+ ++VL+   G  K     +
Sbjct: 360 GTPAADMEDQVPADVASERYQRLIALQNRITLEENQKLIGERVDVLVSSDGGRKDASTSR 419

Query: 428 LVGRSPWLQSVVLN-----SKNHNIGDIIKVRITDVKISTLYGE 466
           + GR+   + V +       +    GD++   +T      L  +
Sbjct: 420 ITGRAADNRLVHIALPEGLEETPRPGDMVSAIVTHAAPYHLVAD 463


>gi|315502601|ref|YP_004081488.1| RNA modification enzyme, miab family [Micromonospora sp. L5]
 gi|315409220|gb|ADU07337.1| RNA modification enzyme, MiaB family [Micromonospora sp. L5]
          Length = 499

 Score =  428 bits (1100), Expect = e-117,   Method: Composition-based stats.
 Identities = 159/456 (34%), Positives = 249/456 (54%), Gaps = 19/456 (4%)

Query: 17  IVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDD-ADLIVLNTCHIREK 75
                  P+ + V++YGCQMNV+DS R+  +    GY R    D+  D++V NTC +RE 
Sbjct: 2   TTAAAGSPRTYQVRTYGCQMNVHDSERISGLLEDAGYVRAAEADEQPDVVVFNTCAVREN 61

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135
           A  ++Y  LG +R +K         + + V GC+AQ +  +I+R++P V+VV G      
Sbjct: 62  ADNRLYGNLGHLRPVKAKH----PGMQIAVGGCLAQKDRGDIVRKAPWVDVVFGTHNIGS 117

Query: 136 LPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
           LP LL+RAR             + F           R+     +++I  GC+  CTFC+V
Sbjct: 118 LPALLDRARHNAAAEVEILESLEVFPSTLPTR----RESTYAGWVSISVGCNNTCTFCIV 173

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
           P  RG E  R    ++ E R L+D+GV E+TLLGQNVN++  +   G++  F  LL +  
Sbjct: 174 PSLRGKEKDRRPGDILSEVRALVDSGVLEVTLLGQNVNSYGVEF--GDRYAFGKLLRACG 231

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
           +I GL R+R+T+ HP+D +D +I A  +   +   LH+P+QSGSD +L++M R + +  Y
Sbjct: 232 DIDGLERVRFTSPHPKDFTDDVIAAMAETPNVCHSLHMPLQSGSDDVLRAMRRSYRSERY 291

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
             II+++R+  PD AI++D IVGFPGET+ DF  T+D+V +  ++ AF+F+YS R GTP 
Sbjct: 292 LGIIEKVRAAMPDAAITTDIIVGFPGETEADFARTLDVVREARFSSAFTFQYSKRPGTPA 351

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI---EK-HGKEKGKLVGR 431
           + M  Q+ + V  ER   L   + E   + N   VG+ +EVL+   E    +  G++ GR
Sbjct: 352 ATMDGQLPKQVVQERYERLIACVEEITWAENKKLVGETVEVLVAVGEGRKDERTGRMSGR 411

Query: 432 SPWLQSVVLNSKNH----NIGDIIKVRITDVKISTL 463
           +   + V   + +       GDI+   +T      L
Sbjct: 412 ARDGRLVHFATGDLAGRIRPGDIVHTTVTYAAPHHL 447


>gi|167045585|gb|ABZ10235.1| putative uncharacterized protein family UPF0004 [uncultured marine
           crenarchaeote HF4000_APKG10I20]
          Length = 472

 Score =  428 bits (1100), Expect = e-117,   Method: Composition-based stats.
 Identities = 180/455 (39%), Positives = 277/455 (60%), Gaps = 10/455 (2%)

Query: 15  SQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIRE 74
             I  Q    ++ ++ ++GCQMNV D+ RME + F  GY+R    +DADLI++NTC IRE
Sbjct: 13  RAIPLQSFHMKQVYLDTFGCQMNVADTDRMELVLFHSGYQRTLEKEDADLILVNTCSIRE 72

Query: 75  KAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYY 134
           KA +K +S  G ++ LK +      DL++ + GC+ Q EGE++L+R P ++ V+GP    
Sbjct: 73  KAEQKTFSLFGGLKPLKMA----NPDLILGLTGCLGQQEGEKLLKRMPYLDFVIGPDQVE 128

Query: 135 RLPELLERARF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC 193
            + + ++R R  GK  V T +  E  +  +  +     +  G +AF+ I +GCDKFCTFC
Sbjct: 129 GIAQAVDRVRNTGKTFVWTGFDQEKVY-SIPELSRDLPKAPGPSAFVNIIKGCDKFCTFC 187

Query: 194 VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS 253
           VVP+TRG E SR   ++ +E R L+++G  EI LLGQNVN++  +GL  +   F +LLY 
Sbjct: 188 VVPFTRGREKSREPEELFEEIRHLVNHGAKEIILLGQNVNSYGKRGLK-KPVPFHELLYG 246

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
           ++EI G+ RLR+TTSHP D +   I+A+ DLD+LM +LHLPVQSG++++LK+M R HT  
Sbjct: 247 IAEIPGVQRLRFTTSHPNDFTRDTIRAYRDLDILMNHLHLPVQSGNNQMLKAMRRDHTIE 306

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
           EY  ++  ++S  P I++S+D IVGFPGETD+ F  T+ +++++GY+ +F F YSPR GT
Sbjct: 307 EYLDLLAELKSEVPGISLSTDIIVGFPGETDEAFGDTLKIMEEVGYSSSFMFAYSPRPGT 366

Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRS 432
           P + + + V E  K  RL  +      Q      + +G+ +EVLIE    + G    GR+
Sbjct: 367 PANELSDSVPEETKKRRLQEIIALQSRQTKQQGQSFIGKNVEVLIEGRSSKPGYVYKGRN 426

Query: 433 PWLQSVVLNSKN--HNIGDIIKVRITDVKISTLYG 465
           P   +V +         G+ + V +  V   +L G
Sbjct: 427 PQYWNVNIQGGEGILQAGETVTVLVKQVSGHSLNG 461


>gi|311068224|ref|YP_003973147.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
           atrophaeus 1942]
 gi|310868741|gb|ADP32216.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
           atrophaeus 1942]
          Length = 509

 Score =  428 bits (1100), Expect = e-117,   Method: Composition-based stats.
 Identities = 179/448 (39%), Positives = 265/448 (59%), Gaps = 15/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++F++++YGCQMN +D+  M  +F + GYE  NS+DDA++I+LNTC IRE A  KV+  L
Sbjct: 66  RKFYIRTYGCQMNEHDTEVMAGIFMALGYEATNSVDDANVILLNTCAIRENAENKVFGEL 125

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G ++ LK    KE  DL++ V GC++Q E     IL++ P V+++ G    +RLPELL  
Sbjct: 126 GHLKTLK----KENPDLILGVCGCMSQEESVVNRILKKHPFVDMIFGTHNIHRLPELLSE 181

Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           A   K +V   +S E D  E L  V     R+  +  ++ I  GCDKFCT+C+VPYTRG 
Sbjct: 182 AYLSKEMVIEVWSKEGDVIENLPKV-----RRGKIKGWVNIMYGCDKFCTYCIVPYTRGK 236

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR   +++ E R+L   G  EITLLGQNVNA  GK  D       DL+  L +I  + 
Sbjct: 237 ERSRRPEEIIQEVRRLASEGYKEITLLGQNVNA-YGKDFDDITYGLGDLMDELRKID-IP 294

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHPRD  D L++  G    L+ ++HLPVQSGS  +LK M R++    Y +++ +
Sbjct: 295 RIRFTTSHPRDFDDHLVEVLGKGGNLLDHIHLPVQSGSSEVLKLMARKYDRARYMELVGK 354

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I++  P+ ++++D IVGFP ETD+ F  T+ L  ++ +  A++F YSPR GTP + M + 
Sbjct: 355 IKAAMPNASLTTDIIVGFPNETDEQFEETLSLYREVEFDSAYTFIYSPREGTPAAKMKDN 414

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440
           V   VK ERL  L   ++E          G+++EVL+E   K   + L G +   + V  
Sbjct: 415 VPMRVKKERLQRLNDLVKEISAKKMKEYEGEVVEVLVEGESKNNPEILAGYTRKSKLVNF 474

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 IG ++ V+I   K  +L GE+V
Sbjct: 475 KGPKEAIGKLVHVKIHQAKTWSLDGEMV 502


>gi|212696093|ref|ZP_03304221.1| hypothetical protein ANHYDRO_00629 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212676722|gb|EEB36329.1| hypothetical protein ANHYDRO_00629 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 450

 Score =  428 bits (1100), Expect = e-117,   Method: Composition-based stats.
 Identities = 168/448 (37%), Positives = 262/448 (58%), Gaps = 17/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +++ + ++GCQMN +DS R+  +    GY   +  ++AD I+ NTC +RE A  K+Y  +
Sbjct: 16  KKYNITTFGCQMNEHDSERISYILEDLGYTLTDDRNEADFILFNTCLVRENAELKLYGQV 75

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAE--GEEILRRSPIVNVVVGPQTYYRLPELLER 142
             ++ LK        + ++ V+GC+ Q     E I ++   V+++ G +    LP+LL +
Sbjct: 76  SSLKKLKEE----NPEKIIAVSGCMMQTSVAREVIEKKHKEVDIIFGTKNINSLPDLLFK 131

Query: 143 A-RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
               G+RV+D         + +      YN K    A++ I  GCD FC++C+VP +RG 
Sbjct: 132 YLEAGERVIDVSE------DNVKDDYVNYNSKNNFQAYVNIMTGCDNFCSYCIVPQSRGR 185

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR  S +++E   L++NG  EITLLGQNVN+  G   D    TF +LL   ++I+GL 
Sbjct: 186 EESRRPSHIIEEIENLVNNGYKEITLLGQNVNS-YGNKSDFN-VTFPELLERCAQIEGLE 243

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           RLR+TTSHP+D+SD LI+   + D +  Y HLP+QSGSD++LK MNR++   +Y +   +
Sbjct: 244 RLRFTTSHPKDLSDDLIRVIKENDNICNYFHLPMQSGSDKVLKDMNRKYNKEQYLEKARK 303

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R   P+IAIS+D IVG+P ET++DF+ T+D+  K+G+  AF+FKYSPR  T  + + E 
Sbjct: 304 LREEIPNIAISTDIIVGYPTETEEDFQETLDVCRKVGFDTAFTFKYSPRPKTKAAKL-ET 362

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVL 440
           +DE +  +R   L   L       N   VG++++VL+E   K  K  L GR+   + V +
Sbjct: 363 IDEKIVQDRFDRLLDTLYPVFNEKNKEYVGKVVDVLLESESKNNKNVLTGRTDTFKLVHV 422

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
            +    IG I+KV+ITD    T+ G LV
Sbjct: 423 EADKKLIGQIVKVKITDNTSFTISGHLV 450


>gi|309811287|ref|ZP_07705076.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Dermacoccus sp. Ellin185]
 gi|308434769|gb|EFP58612.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Dermacoccus sp. Ellin185]
          Length = 512

 Score =  428 bits (1100), Expect = e-117,   Method: Composition-based stats.
 Identities = 162/460 (35%), Positives = 255/460 (55%), Gaps = 26/460 (5%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYE------RVNSMDDADLIVLNTCHIREK 75
            + + + V+++GCQMNV+DS R+  +    GY            ++ DL+V NTC +RE 
Sbjct: 2   AMAKTYEVRTHGCQMNVHDSERISGLLEQAGYTDFAALPETERSENPDLVVFNTCAVREN 61

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135
           AA K+Y  LG +R  K++       + + V GC+AQ +   I+ R+P V+VV G      
Sbjct: 62  AANKLYGNLGHLRPTKDAT----PGMQIAVGGCLAQKDRATIVERAPWVDVVFGTHNVGS 117

Query: 136 LPELLERARFG-KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCV 194
           LP LL+RAR   +  V+   S+E     L        R    + +++I  GC+  CTFC+
Sbjct: 118 LPALLDRARHNAEAQVEILESLEVFPSTLPT-----RRDSAYSGWVSISVGCNNTCTFCI 172

Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL 254
           VP  RG E  R   +++ E + L+  GV EITLLGQNVN +  +   G++  FS LL + 
Sbjct: 173 VPALRGKEKDRRPGEILAEVKALVAQGVVEITLLGQNVNTYGVEF--GDRHAFSKLLRAC 230

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
            EI+GL R+R+T+ HP   +D +I A  +   +MP LH+P+QSGSD++LK M R + + +
Sbjct: 231 GEIEGLERVRFTSPHPAAFTDDVIDAMAETPNVMPSLHMPLQSGSDKVLKDMRRSYRSKK 290

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
           +  II+++R   PD AI++D IVGFPGET++DF+ T+D+V+   ++ AF+F+YS R GTP
Sbjct: 291 FLGIIEKVREKMPDAAITTDIIVGFPGETEEDFQGTLDVVEASRFSSAFTFQYSIRPGTP 350

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI---EK-HGKEKGKLVG 430
            + M +Q+ + V  ER   L +       + N    G+ +EVL+   E     E  ++ G
Sbjct: 351 AATMDDQIPKEVVQERFERLIELQERVSWAGNREQEGRTVEVLVAPSEGRKDAETHRMSG 410

Query: 431 RSPWLQSVVLN----SKNHNIGDIIKVRITDVKISTLYGE 466
           R+   + V       +K    GD++ V +T      L  +
Sbjct: 411 RARDNRLVHFAVPEGAKRPRPGDMVTVDVTYGAPHHLVAD 450


>gi|311086171|gb|ADP66253.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Buchnera
           aphidicola str. LL01 (Acyrthosiphon pisum)]
 gi|311087332|gb|ADP67412.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Buchnera
           aphidicola str. JF99 (Acyrthosiphon pisum)]
          Length = 427

 Score =  428 bits (1100), Expect = e-117,   Method: Composition-based stats.
 Identities = 176/435 (40%), Positives = 265/435 (60%), Gaps = 12/435 (2%)

Query: 36  MNVYDSLRMEDMFFSQG-YERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSR 94
           MN YDS  +  +      Y    S ++AD+++LNTC IREKA EKV+  LGR + +KN+ 
Sbjct: 1   MNEYDSSMIITLLEKNNQYSLTKSAENADILILNTCSIREKAQEKVFHQLGRWKKIKNN- 59

Query: 95  IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV-VDTD 153
                 +++ V GCVA  EG+EI +R+  V+++ G QT +RLP++++     +++ +D  
Sbjct: 60  ---NPKVIIAVGGCVATQEGKEIFKRANYVDIIFGTQTLHRLPKMIDEVEKKRKLSIDIS 116

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           +   +KF+          +K+G TA ++I EGC+K+C+FCVVPYTRG EISR    V+ E
Sbjct: 117 FPKLEKFKYFL-----APKKKGYTADISIMEGCNKYCSFCVVPYTRGNEISRPCDDVLFE 171

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
              L   G+ EI LLGQNVNA++G   +G+ C FS+L+  ++EI G+ R+R+TTS+P + 
Sbjct: 172 ISLLAKQGIKEINLLGQNVNAYQGPTFNGKVCYFSELIRLVAEIDGIERIRFTTSNPLEF 231

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
           +D +I+ + D   L+ +LHLPVQSGS++IL  M R +T  +Y  II ++   RPDI ISS
Sbjct: 232 TDDIIEVYKDTPKLVSFLHLPVQSGSNKILNLMKRSYTTEDYTSIIKKLTIARPDIQISS 291

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLC 393
           DFIVGFPGE++ DF  T++ +  I +  +FSF YS R GTP SNM + +D   K  RL  
Sbjct: 292 DFIVGFPGESEIDFEKTIEFIKNINFDMSFSFIYSARPGTPASNMNDNLDLKEKKRRLYI 351

Query: 394 LQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNSKNHNIGDIIK 452
           LQ+++  Q + ++    G I  VL+E    +    L GR+   + V     +  IG  + 
Sbjct: 352 LQERINIQTMLWSRKMFGSIQSVLVEGVSDKNIMDLYGRTENNRVVTFQGSSEMIGQFVN 411

Query: 453 VRITDVKISTLYGEL 467
           V+I  V   +L GEL
Sbjct: 412 VKIKKVHTHSLKGEL 426


>gi|304389608|ref|ZP_07371570.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Mobiluncus curtisii
           subsp. curtisii ATCC 35241]
 gi|304327161|gb|EFL94397.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Mobiluncus curtisii
           subsp. curtisii ATCC 35241]
          Length = 498

 Score =  427 bits (1099), Expect = e-117,   Method: Composition-based stats.
 Identities = 160/463 (34%), Positives = 257/463 (55%), Gaps = 30/463 (6%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDD------------ADLIVLNTC 70
            P+ + VK+ GCQMN +DS RM  +  + G+  V  +              ADL+VLNTC
Sbjct: 3   TPRTYLVKTLGCQMNEHDSERMAGLLDAAGWVPVAEVPQKAARATNAGDGGADLVVLNTC 62

Query: 71  HIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGP 130
            +RE A  K+Y  LG++ ++K    +    +++ V GC AQ EG +I+ R+P V+ V G 
Sbjct: 63  SVREAAGTKLYGHLGQLADVK----RNRPGMMIAVGGCFAQQEGSKIIDRAPWVDAVFGT 118

Query: 131 QTYYRLPELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKF 189
                LP LL+RA   +   V+ + S++     L       +R+   +A+++I  GC+  
Sbjct: 119 HNIDALPVLLKRAEHNQEAAVEIEESLKVFPSVLP-----AHRQSPASAWVSISVGCNNT 173

Query: 190 CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSD 249
           CTFC+VP  RG E  R+ + +V E + ++D G  E+TLLGQNVN++      G +  F+D
Sbjct: 174 CTFCIVPSLRGRERDRNPADIVAEVKAVVDAGALEVTLLGQNVNSYGMSF--GRRGAFAD 231

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
           LL  + +  GL RLR+T+ HP   ++ +I A  +   +MP LH P+QSGSDRIL+ M R 
Sbjct: 232 LLREVGKTPGLERLRFTSPHPAAFTEEVIAAMAETPTVMPSLHFPLQSGSDRILRQMRRS 291

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369
           + +  + +I+  +RS  P+ AI++D IVGFPGET+ DF+ T+D++ +  +  AF+F YS 
Sbjct: 292 YRSERFLRILREVRSAIPEAAITTDVIVGFPGETEADFQDTLDVLSEARFQAAFTFIYSR 351

Query: 370 RLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK---G 426
           R GTP ++  +QVD  + A+R   L +   +  +  N+   G+I+EVL+   G++     
Sbjct: 352 RPGTPAADRDDQVDPEIVAQRYQRLLELQEKITLEENEKQEGRIVEVLVTAGGRKDEATA 411

Query: 427 KLVGRSPWLQSVVL---NSKNHNIGDIIKVRITDVKISTLYGE 466
           ++ GR+   + V            GD + VR+T      L  +
Sbjct: 412 RMSGRAQDNRLVHFAVPQGIKVRPGDFVTVRVTHGAPHHLVAD 454


>gi|88606847|ref|YP_505456.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Anaplasma phagocytophilum
           HZ]
 gi|123494765|sp|Q2GJJ5|MIAB_ANAPZ RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|88597910|gb|ABD43380.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Anaplasma phagocytophilum
           HZ]
          Length = 444

 Score =  427 bits (1099), Expect = e-117,   Method: Composition-based stats.
 Identities = 206/450 (45%), Positives = 303/450 (67%), Gaps = 14/450 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + +  +++SYGCQMNVYD+L MED+    GY  V+  +DAD+I++NTCHIREKA+EK+YS
Sbjct: 1   MTRGLYIESYGCQMNVYDALMMEDLLRPVGYAAVSRPEDADIILINTCHIREKASEKLYS 60

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            LGR+R +K        + +++VAGCVAQAEGE +  R+P VNVVVGPQ  + LPEL+ +
Sbjct: 61  TLGRMRVIKKE------ECILIVAGCVAQAEGEAVFERAPYVNVVVGPQGLHTLPELIMK 114

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            +  K+ ++ ++ V  KF+ +SI         GV+A+++IQEGCDKFCTFCVVPYTRG E
Sbjct: 115 VKRDKKQINIEFPVVSKFDAISIDRKANG---GVSAYVSIQEGCDKFCTFCVVPYTRGPE 171

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR +  +++E ++L D G  EI L+GQNVNA+ G    G +     L+  +S I G+ R
Sbjct: 172 YSRDVEAILEEVKQLTDRGTKEIVLIGQNVNAYHG-TYKGNEWDLGKLIQKVSLIDGVER 230

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +RYTTSHPRDM   L +AH D   L P++HLPVQSGSD IL+ MNR+HTA EY ++++++
Sbjct: 231 IRYTTSHPRDMHPSLYEAHRDEKKLAPFVHLPVQSGSDAILRKMNRKHTAEEYLRVVEQL 290

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           +    ++A+SSDFIVGFPGET+ DF  TM LV+ +G+A ++SFKYSPR GTPG+    QV
Sbjct: 291 KDSNKNMALSSDFIVGFPGETEKDFEETMKLVESVGFALSYSFKYSPRPGTPGAEYSNQV 350

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKGKLVGRSPWLQSVVL- 440
            E  K+ RL  LQ  L +QQ+ FN +  G++++VL+ +       ++ G+S + QS+ + 
Sbjct: 351 PEEEKSARLAALQGLLTKQQLQFNKSMEGRVMDVLVGDPSSMRSDRIFGKSEYTQSIHIS 410

Query: 441 --NSKNHNIGDIIKVRITDVKISTLYGELV 468
             +        +++V I   + ++L G ++
Sbjct: 411 APSGSEDCFNRMVRVEILHGRQNSLEGTVL 440


>gi|295110088|emb|CBL24041.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Ruminococcus obeum
           A2-162]
          Length = 478

 Score =  427 bits (1099), Expect = e-117,   Method: Composition-based stats.
 Identities = 160/458 (34%), Positives = 256/458 (55%), Gaps = 13/458 (2%)

Query: 13  MVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHI 72
           + +Q  +    P  + + ++GCQMN   S  +  +    GY R ++ ++AD+++ NTC +
Sbjct: 30  LTAQKSNAAGRPLTYCLTTFGCQMNEKQSEAVAGIMDEIGYVRQDN-EEADVVLYNTCTV 88

Query: 73  REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGP 130
           RE A  KVY  LG + +LK+       D+ +++ GC+ Q +   ++I +  P V++V G 
Sbjct: 89  RENANLKVYGRLGHLHSLKDR----NPDMKIILFGCMMQEQHVVDKIRKSYPFVDLVFGT 144

Query: 131 QTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190
              ++  EL        + +   +   D+       +  Y  K G    + I  GC+ FC
Sbjct: 145 HNIFKFAELFYEMLQSDQQIINIWEGTDQIVEDLPTERNYTFKSG----VNIMFGCNNFC 200

Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDL 250
           ++C+VPY RG E SR    +V E ++L+ +GV E+ LLGQNVN+  GK L+    TF+ L
Sbjct: 201 SYCIVPYVRGRERSREPEAIVKEVKRLVADGVSEVMLLGQNVNS-YGKTLE-HPVTFAQL 258

Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
           L  L +++GL R+R+ TSHP+D+SD LI+       +  +LHLP+QSGS RILK MNR +
Sbjct: 259 LEMLEDVEGLKRIRFMTSHPKDLSDELIETMAKSKKICHHLHLPLQSGSSRILKIMNRCY 318

Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370
              +Y  ++++IR   PDI++++D IVGFPGET++DFR T+D+V K GY  AF+F YS R
Sbjct: 319 DKEKYLNLVEKIRKAIPDISLTTDIIVGFPGETEEDFRETLDVVAKCGYDTAFTFLYSKR 378

Query: 371 LGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG 430
             TP + M  QV ++V  ER   L   ++++  + +      + EVL+E+  KEKG   G
Sbjct: 379 SDTPAAAMENQVPQDVAKERFNRLLALVQKEGRTRSSRFEASVQEVLVEEESKEKGIFTG 438

Query: 431 RSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           R+ +   V        +G  +KV + +       G LV
Sbjct: 439 RTEYNLLVHFPGSADLLGKYVKVSLDECHGFYYMGSLV 476


>gi|91216870|ref|ZP_01253834.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Psychroflexus torquis
           ATCC 700755]
 gi|91185031|gb|EAS71410.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Psychroflexus torquis
           ATCC 700755]
          Length = 485

 Score =  427 bits (1099), Expect = e-117,   Method: Composition-based stats.
 Identities = 168/457 (36%), Positives = 256/457 (56%), Gaps = 22/457 (4%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
            +++SYGC MN  DS  +  +   +GY   N + +ADL+++NTC IR+KA + V   L +
Sbjct: 26  LYIESYGCAMNFSDSEIVASILNKEGYNTTNELSEADLVLVNTCSIRDKAEQTVRKRLEK 85

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
              +K    K    + V V GC+A+    + L    IV++VVGP  Y  LP LLE    G
Sbjct: 86  YNAVK----KINPSMKVGVLGCMAERLKSKFLEEEKIVDLVVGPDAYKDLPNLLEEVESG 141

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           +  ++   S E+ +  +S V        GV+AF++I  GCD  CTFC+VP+TRG E SR 
Sbjct: 142 RDAINVILSKEETYGDISPVRLQ---SNGVSAFVSITRGCDNMCTFCIVPFTRGRERSRD 198

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNA--WRGKGLDGEKCT-----------FSDLLYS 253
              ++DE   L   G  EITLLGQNV++  W G GL  +  +           FS LL  
Sbjct: 199 PLSIIDEVNDLWSKGFKEITLLGQNVDSYLWYGGGLKKDFKSATEMQKATAVGFSHLLDI 258

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
           +++ +  +R+R++TS+P+DM+  +I+     + +  Y+HLPVQSGSDRILK MNR HT  
Sbjct: 259 VAKAQPGMRIRFSTSNPQDMTIDVIEVMAKHNNICDYIHLPVQSGSDRILKKMNRLHTRE 318

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
           EY ++ID IR + P   IS D I+GFP ET++D + T+ L++ + Y   + F YS R GT
Sbjct: 319 EYFRLIDNIRKIIPGCGISQDMIIGFPSETEEDHKDTLSLMENVKYNFGYMFAYSERPGT 378

Query: 374 PGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGR 431
            G+    + + E  K +RL  +    ++      +  +G+I EVL+EK  K+   +  GR
Sbjct: 379 LGAKKFEDDIPEATKKKRLQEIIDVQQKHSRFRTEQHLGKIEEVLVEKESKKSDSQWSGR 438

Query: 432 SPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           +    +VV   K++ +GD + V++     +TL GE V
Sbjct: 439 NTQNTTVVFPKKDYKLGDYVLVKMEKCTSATLIGEPV 475


>gi|115497176|ref|NP_001069114.1| CDK5 regulatory subunit-associated protein 1 [Bos taurus]
 gi|115304933|gb|AAI23653.1| CDK5 regulatory subunit associated protein 1 [Bos taurus]
 gi|296481106|gb|DAA23221.1| CDK5 regulatory subunit associated protein 1 [Bos taurus]
          Length = 589

 Score =  427 bits (1099), Expect = e-117,   Method: Composition-based stats.
 Identities = 155/479 (32%), Positives = 254/479 (53%), Gaps = 38/479 (7%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +R ++++YGCQMNV D+     +    GY R +++ +AD+I+L TC IREKA + +++ L
Sbjct: 102 RRVYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCSIREKAEQTIWNRL 161

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            ++++LK+ R++    L + + GC+A+   EEIL R  +V+++ GP  Y  LP+LL  A 
Sbjct: 162 HQLKSLKSKRLRSRVPLRIGILGCMAERLKEEILNREKMVDILAGPDAYRDLPQLLAVAE 221

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G++  +   S+++ +  +  V          +AF++I  GCD  C++C+VP+TRG E S
Sbjct: 222 SGQQAANVLLSLDETYADVMPVQTS---PSATSAFVSIMRGCDNMCSYCIVPFTRGRERS 278

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG---------------------LDGE 243
           R ++ +++E RKL + G+ E+TLLGQNVN++R                            
Sbjct: 279 RPVASILEEVRKLSEQGLKEVTLLGQNVNSFRDNSEVQFNNAVSTNLSRGFSTNYKAKQG 338

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
              F+ LL  +S I   +R+R+T+ HP+D  D +++   + D +   +HLP QSGS R+L
Sbjct: 339 GLRFAHLLDQVSRIDPEMRIRFTSPHPKDFPDEVLQLIRERDNICKQIHLPAQSGSSRVL 398

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           ++M R ++   Y ++I  IR   P +++SSDFI GF GET++D   T+ L+ ++ Y   F
Sbjct: 399 EAMRRGYSREAYVELIHHIRESIPGVSLSSDFIAGFCGETEEDHLQTVSLLREVQYNIGF 458

Query: 364 SFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422
            F YS R  T     + + + E VK  RL  L    RE+    N + VG    VL+E   
Sbjct: 459 LFAYSMRQKTRAYHRLKDDIPEEVKLRRLEELITVFREEATKANKSFVGCTQLVLVEGPS 518

Query: 423 KEK-GKLVGRSPWLQSVVLNSKN------------HNIGDIIKVRITDVKISTLYGELV 468
           K     L GR+     V+                    GD + V+IT     TL G ++
Sbjct: 519 KRSAADLCGRNDGNLKVIFADAEMEDATDSRLRVRAQPGDYVLVKITSASSQTLKGHVL 577


>gi|229820928|ref|YP_002882454.1| RNA modification enzyme, MiaB family [Beutenbergia cavernae DSM
           12333]
 gi|229566841|gb|ACQ80692.1| RNA modification enzyme, MiaB family [Beutenbergia cavernae DSM
           12333]
          Length = 549

 Score =  427 bits (1098), Expect = e-117,   Method: Composition-based stats.
 Identities = 168/471 (35%), Positives = 265/471 (56%), Gaps = 31/471 (6%)

Query: 19  DQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERV--------NSMDDADLIVLNTC 70
           +     + + +++ GCQMNV+DS RM  M  + G  R             +AD++V+NTC
Sbjct: 44  ESSAAGRSYMIRTLGCQMNVHDSERMAGMLEAAGLVRAAGDGTNLLQDAAEADVVVINTC 103

Query: 71  HIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGP 130
            +RE AA ++Y  LG++ +LK    +E   L + V GC+AQ+E  +I+ ++P V+VV G 
Sbjct: 104 AVRENAATRLYGNLGQLASLK----RERPGLQIAVGGCLAQSERTKIVEKAPWVDVVFGT 159

Query: 131 QTYYRLPELLERARFG-KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKF 189
                LP LLERAR   +  V+   S++     L        R+    A++++  GC+  
Sbjct: 160 HNLDALPVLLERARHNAEAQVEIAESLQVFPSTLPT-----KRESAFAAWVSVSVGCNNT 214

Query: 190 CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSD 249
           CTFC+VP+ RG E  R   +V+ E   ++D G  E+TLLGQNVN++      G++  F+ 
Sbjct: 215 CTFCIVPHLRGKERDRRPGEVLAEVAAVVDAGAIEVTLLGQNVNSYGVSF--GDRGAFAK 272

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
           LL +  EI+GL R+R+T+ HP   +D +I A      +MP LH+P+QSGSDRIL++M R 
Sbjct: 273 LLRACGEIEGLERVRFTSPHPAAFTDDVIDAMASTPNVMPQLHMPLQSGSDRILRAMRRS 332

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369
           + + ++  I+DR+R+  PD AI++D IVGFPGET++DF AT+D+V    ++ AF+F+YSP
Sbjct: 333 YRSEKFLGILDRVRARIPDAAITTDIIVGFPGETEEDFAATLDVVAASRFSSAFTFQYSP 392

Query: 370 RLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKG-- 426
           R GT  + + +QV  +V  ER   L           N A VG+ +EVLI    G++ G  
Sbjct: 393 RPGTSAATLPDQVPADVVTERYARLVALQERISAEENAALVGREVEVLISAGEGRKDGAT 452

Query: 427 -KLVGRSPWLQSVVL-------NSKNHNIGDIIKVRITDVKISTLYGELVV 469
            +L GR+   + V +        ++    GD++  R+T      L  +  +
Sbjct: 453 SRLTGRARDNRLVHVALPASMTTAERPRPGDVVVTRVTHGAPHHLVADAAL 503


>gi|319936488|ref|ZP_08010904.1| tRNA 2-methylthioadenine synthetase [Coprobacillus sp. 29_1]
 gi|319808603|gb|EFW05155.1| tRNA 2-methylthioadenine synthetase [Coprobacillus sp. 29_1]
          Length = 480

 Score =  427 bits (1098), Expect = e-117,   Method: Composition-based stats.
 Identities = 166/448 (37%), Positives = 265/448 (59%), Gaps = 16/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           Q++F+++YGCQ N  D   +  +  S GYE  + + DA +++LNTC IRE A EKV+  +
Sbjct: 44  QKYFIQTYGCQANERDGETLAGILESLGYEATDEIKDAQVVLLNTCAIRENAEEKVFGKI 103

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQ--AEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
           G ++ +K    +   +++  + GC+AQ     ++IL +   V+++ G    +RLP LL++
Sbjct: 104 GYLKKVK----RTNPNVIFGICGCMAQEEVVIQKILEKHQQVDMIFGTHNIHRLPVLLKQ 159

Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           A   K +V   +S E D  E L       +R     A++ I  GC+KFCT+C+VPYTRG 
Sbjct: 160 AMLDKEMVLEVWSKEGDVIENLP-----SHRAHPYKAWVNIMYGCNKFCTYCIVPYTRGK 214

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR  +++++E  +L   G  EITLLGQNVN+  GK  D +   F+ LL  +++  G+ 
Sbjct: 215 ERSRLKNEIIEEVNELKAQGYQEITLLGQNVNS-YGKDFD-DGYNFASLLADVAQ-TGIP 271

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHP D +D +I      D +MP +HLPVQSG+  +LK M RR++  +Y ++ D+
Sbjct: 272 RIRFTTSHPWDFTDDMIDTIAQYDNIMPAIHLPVQSGNSEVLKRMGRRYSREQYLELFDK 331

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I++  PD  I++D IVGFPGETD+ F  T+ L +   Y  A++F YSPR GTP + M + 
Sbjct: 332 IKTKIPDCTITTDIIVGFPGETDEQFEDTITLYEHCEYDLAYTFIYSPRAGTPAAKMEDD 391

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVL 440
           +D + K +RL  L   + E+ +  N   + +++EVL+E    K+   L G +   + +  
Sbjct: 392 IDIHTKEQRLYRLNDLVNEKALKQNQKYLDEVVEVLVEGTSKKDDNMLTGYTRHQKLINF 451

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                +IG I+ V++T+VK   L GE +
Sbjct: 452 KGNQDHIGQIVPVKVTEVKTWALKGEEI 479


>gi|253577928|ref|ZP_04855200.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251850246|gb|EES78204.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 485

 Score =  427 bits (1098), Expect = e-117,   Method: Composition-based stats.
 Identities = 160/444 (36%), Positives = 262/444 (59%), Gaps = 14/444 (3%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           FF+++ GCQMN   +  +  +    GY  V+  +DAD+++ NTC +RE A  K+Y  LG 
Sbjct: 51  FFIQNAGCQMNSLQTDTVAGIVKRMGYTEVSREEDADVVIYNTCTVRENANLKIYGHLGH 110

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           ++++K    K+  +L +++ GC+ Q     E+I +    V++V G   +++ PEL  R+ 
Sbjct: 111 LKSIK----KKNPELKIILFGCMMQEPEVIEKIHKEYSFVDLVFGTHNFHKFPELFYRSL 166

Query: 145 FGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             + +++D     ++  E +       +RK      + I  GC+ FC++C+VPY RG E 
Sbjct: 167 NTEGQIIDVWKESDEIVEGMP-----SDRKYSFKTGVNIMFGCNNFCSYCIVPYVRGREK 221

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR    +++E + L+ +GV E+ LLGQNVN+  GK L+    TF+ LL  +  I+GL R+
Sbjct: 222 SREPEAIIEEIKGLVADGVTEVMLLGQNVNS-YGKTLE-HPVTFAQLLKQVEAIEGLKRI 279

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+ TSHP+D+SD LI+   +   +  +LHLP+QSGS RILK MNRR+   +Y +++ +IR
Sbjct: 280 RFMTSHPKDLSDELIRTMAESKKVCHHLHLPMQSGSSRILKIMNRRYDKEKYLELVAKIR 339

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           +  PDI++++D IVGFPGET++DF+ T+D+V+K  +  AF+F YS R GTP + M  QV 
Sbjct: 340 NAVPDISLTTDIIVGFPGETEEDFQDTLDVVEKCDFDSAFTFIYSKRSGTPAAKMENQVP 399

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
           E+V  +R   L   ++E+    +    G + E+L+E+  +EKG   GR+ +   V     
Sbjct: 400 EDVVKDRFDRLLALVQEKGRKASSRFEGTVQEILVEEESREKGIFTGRTEYNLLVHFPGC 459

Query: 444 NHNIGDIIKVRITDVKISTLYGEL 467
              IG  +KV++   K    +G L
Sbjct: 460 QDLIGKYVKVKLDTCKGFYYFGSL 483


>gi|148235437|ref|NP_001090499.1| CDK5 regulatory subunit associated protein 1 [Xenopus laevis]
 gi|116063382|gb|AAI23345.1| MGC154823 protein [Xenopus laevis]
          Length = 565

 Score =  427 bits (1098), Expect = e-117,   Method: Composition-based stats.
 Identities = 156/476 (32%), Positives = 245/476 (51%), Gaps = 37/476 (7%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + ++++YGCQMNV D+     +    GY R +   +AD+I L TC +REKA + +++ L 
Sbjct: 82  KIYLETYGCQMNVNDTEIAWSILQQNGYVRTHIETEADVIFLVTCSVREKAEQTIWNRLQ 141

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           +   LK  R K+   + + + GC+A+   +EIL R  +V++V GP  Y  LP LL  A  
Sbjct: 142 QFATLKRKRSKDNR-MRIGILGCMAERLKQEILERENLVDIVAGPDAYRDLPRLLAVAES 200

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G++V +   SV++ +  +  V    + K   +AF++I  GCD  CT+C+VP+TRG E SR
Sbjct: 201 GQQVANVLLSVDETYADIMPVHTSASSK---SAFVSIMRGCDNMCTYCIVPFTRGRERSR 257

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG---------------------LDGEK 244
            L  +++E R L   GV E+TLLGQNVN++                              
Sbjct: 258 PLHSIIEEVRMLSSQGVKEVTLLGQNVNSYCDSSSVQFPNVGSPSLSRGFSTIYKHKKGG 317

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304
             F DLL  +S+I   +R+R+T+ HP+D  D +++   +   +   +H+P QSGS+R+L+
Sbjct: 318 LRFVDLLDKVSQIDPEMRIRFTSPHPKDFPDEVLQLIAERHNICKQIHIPAQSGSNRVLE 377

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
           SM R ++   Y  +I  IR   P +++SSDFI GF  ET++D + T+ L+ ++ Y  A+ 
Sbjct: 378 SMRRGYSREAYLDLIQNIRESIPGVSLSSDFITGFCQETEEDHQQTLSLLREVSYNAAYL 437

Query: 365 FKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK 423
           F YS R  T     + + V   VK  RL  L    RE+    N   VG    VL+E   K
Sbjct: 438 FAYSMRKKTRAYHRLQDDVPPEVKQRRLEELISVFREEAGRVNQRTVGSTQLVLVEGPSK 497

Query: 424 E-KGKLVGRSPWLQSVVLNSKNH----------NIGDIIKVRITDVKISTLYGELV 468
               +L GR+     V+ +                GD + V+IT     +L G L+
Sbjct: 498 RSPAELCGRNDGNTKVIFSETPKADNLALENKIQPGDYVLVKITSSSSQSLKGTLL 553


>gi|329897206|ref|ZP_08271946.1| tRNA-i(6)A37 methylthiotransferase [gamma proteobacterium IMCC3088]
 gi|328921361|gb|EGG28755.1| tRNA-i(6)A37 methylthiotransferase [gamma proteobacterium IMCC3088]
          Length = 434

 Score =  427 bits (1098), Expect = e-117,   Method: Composition-based stats.
 Identities = 192/440 (43%), Positives = 276/440 (62%), Gaps = 16/440 (3%)

Query: 36  MNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSR 94
           MN YDS R+ D+   S   ER ++ ++AD+++LNTC IREKA EKV+  LGR + LK   
Sbjct: 1   MNEYDSARIGDLLKTSHQLERTDNPEEADVLLLNTCSIREKAQEKVFHQLGRWKPLKEK- 59

Query: 95  IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-ERARFGK---RVV 150
                +L++ V GCVA  EG  I  R+P V++V GPQT +RLPE++ ER++ G     VV
Sbjct: 60  ---NPNLIIGVGGCVASQEGAAIGERAPYVDLVFGPQTLHRLPEMMAERSQQGPGNTIVV 116

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
           D  +   +KF+ L   +      +G +AF++I EGC K+C+FCVVPYTRG E+SR L  V
Sbjct: 117 DVSFPEIEKFDCLPDPEI-----KGASAFVSIMEGCSKYCSFCVVPYTRGEEVSRPLDDV 171

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270
           + E     ++GV E+ LLGQNVNA+RG    GE   F++LL  ++ I  + R+RYTTSHP
Sbjct: 172 IAEVAHAAEHGVKEVNLLGQNVNAYRGLNYLGEVVDFAELLTYIARIPAIERIRYTTSHP 231

Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330
            + S  LI  + ++  L+ +LHLPVQSGSDRIL +M R HTA EY+  I  +R +RP+I+
Sbjct: 232 VEFSQALIDVYAEIPQLVDHLHLPVQSGSDRILAAMKRGHTALEYKSKIRALRKIRPNIS 291

Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER 390
           +SSDFIVGFPGETD DF ATM L++ IGY  +FSF YS R GTP +++++     VK +R
Sbjct: 292 MSSDFIVGFPGETDADFNATMKLIEDIGYDSSFSFIYSARPGTPAADLVDDTPMEVKKQR 351

Query: 391 LLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLNSKNH-NIG 448
           L  LQ ++  Q    ++  VG    +L+     K+ G+L GR+   + V  +  +H  I 
Sbjct: 352 LQILQARIAGQARIISENMVGTRQRILVSGVSKKDPGQLQGRTENNRVVNFSCTDHGLIN 411

Query: 449 DIIKVRITDVKISTLYGELV 468
           +   V + +   ++L G L+
Sbjct: 412 EFAWVTVDEALPNSLRGTLL 431


>gi|158337776|ref|YP_001518952.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Acaryochloris
           marina MBIC11017]
 gi|229890405|sp|B0C0E2|MIAB_ACAM1 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|158308017|gb|ABW29634.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Acaryochloris marina
           MBIC11017]
          Length = 454

 Score =  427 bits (1098), Expect = e-117,   Method: Composition-based stats.
 Identities = 179/454 (39%), Positives = 279/454 (61%), Gaps = 23/454 (5%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +R+ + +YGCQMN  DS RM  +  + GY+   + DDA+LI+ NTC IR+ A  KVYS+L
Sbjct: 6   RRYHITTYGCQMNKADSERMAGVLENMGYQWSENPDDANLILCNTCTIRDNAEHKVYSYL 65

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR    K+++     DL +VVAGCVAQ EG+ +LRR P +++V+GPQ   RL +LLE+  
Sbjct: 66  GRQAKRKHAQ----PDLTLVVAGCVAQQEGDALLRRVPELDLVMGPQHANRLQDLLEQVA 121

Query: 145 FGKRVVDTD--YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            G++V+ T+  + VED  +          R   VTA++ +  GC++ CT+CVVP  RG+E
Sbjct: 122 SGQQVLATEPIHIVEDITKP--------RRDSAVTAWVNVIYGCNERCTYCVVPNVRGVE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG------EKCTFSDLLYSLSE 256
            SR+   +  E  +L + G  E+TLLGQN++A  G+ L G       + T +DLLY + +
Sbjct: 174 QSRTPEAIRAEMVQLGEQGFKEVTLLGQNIDA-YGRDLPGTTSEGRHQHTLTDLLYFVHD 232

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           + G+ R+R+ TSHPR  ++ LI+A  +L  +  + H+P QSG + +LK+M+R +T  +YR
Sbjct: 233 VPGIERIRFATSHPRYFTERLIQACYELPKVCEHFHIPFQSGDNDVLKAMSRGYTHEKYR 292

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
           +IID IR++ PD +IS+D IVGFPGET++ F  TM LV+ I +    +  YSPR GTP +
Sbjct: 293 RIIDNIRAIMPDASISADAIVGFPGETEEQFMNTMQLVEDIEFDLLNTAAYSPRPGTPAA 352

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSPWL 435
               Q+ E VKA+RL  L + +       +     +I EVL+E ++ K+  +++GR+   
Sbjct: 353 LWDNQLSEEVKADRLQRLNRLVGVCAELRSQRYANRIEEVLVEDQNPKDPTQVMGRTRGN 412

Query: 436 QSVVLNSKNHNI-GDIIKVRITDVKISTLYGELV 468
           +          + G+II V++T+V+  +L GE +
Sbjct: 413 RLTFFPGNIEQLRGEIIAVKVTEVRSFSLTGEPL 446


>gi|302866042|ref|YP_003834679.1| RNA modification enzyme, MiaB family [Micromonospora aurantiaca
           ATCC 27029]
 gi|302568901|gb|ADL45103.1| RNA modification enzyme, MiaB family [Micromonospora aurantiaca
           ATCC 27029]
          Length = 499

 Score =  427 bits (1098), Expect = e-117,   Method: Composition-based stats.
 Identities = 159/456 (34%), Positives = 249/456 (54%), Gaps = 19/456 (4%)

Query: 17  IVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDD-ADLIVLNTCHIREK 75
                  P+ + V++YGCQMNV+DS R+  +    GY R    D+  D++V NTC +RE 
Sbjct: 2   TTAAAGSPRTYQVRTYGCQMNVHDSERISGLLEDAGYVRAAEADEQPDVVVFNTCAVREN 61

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135
           A  ++Y  LG +R +K         + + V GC+AQ +  +I+R++P V+VV G      
Sbjct: 62  ADNRLYGNLGHLRPVKAKH----PGMQIAVGGCLAQKDRGDIVRKAPWVDVVFGTHNIGS 117

Query: 136 LPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
           LP LL+RAR             + F           R+     +++I  GC+  CTFC+V
Sbjct: 118 LPALLDRARHNAAAEVEILESLEVFPSTLPTR----RESTYAGWVSISVGCNNTCTFCIV 173

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
           P  RG E  R    ++ E R L+D+GV E+TLLGQNVN++  +   G++  F  LL +  
Sbjct: 174 PSLRGKEKDRRPGDILSEVRALVDSGVLEVTLLGQNVNSYGVEF--GDRYAFGKLLRACG 231

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
           +I GL R+R+T+ HP+D +D +I A  +   +   LH+P+QSGSD +L++M R + +  Y
Sbjct: 232 DIDGLERVRFTSPHPKDFTDDVIAAMAETPNVCHSLHMPLQSGSDDVLRAMRRSYRSERY 291

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
             II+++R+  PD AI++D IVGFPGET+ DF  T+D+V +  ++ AF+F+YS R GTP 
Sbjct: 292 LGIIEKVRAAMPDAAITTDIIVGFPGETEADFARTLDVVREARFSSAFTFQYSKRPGTPA 351

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI---EK-HGKEKGKLVGR 431
           + M  Q+ + V  ER   L   + E   + N   VG+ +EVL+   E    +  G++ GR
Sbjct: 352 ATMDGQLPKQVVQERYERLIACVEEITWAENKKLVGETVEVLVAVGEGRKDERTGRMSGR 411

Query: 432 SPWLQSVVLNSKNH----NIGDIIKVRITDVKISTL 463
           +   + V   + +       GDI+   +T      L
Sbjct: 412 ARDGRLVHFATGDLAGRIRPGDIVHTTVTYAAPHHL 447


>gi|116625754|ref|YP_827910.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Candidatus Solibacter
           usitatus Ellin6076]
 gi|122252074|sp|Q01RU5|MIAB_SOLUE RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|116228916|gb|ABJ87625.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Candidatus Solibacter
           usitatus Ellin6076]
          Length = 445

 Score =  427 bits (1098), Expect = e-117,   Method: Composition-based stats.
 Identities = 179/451 (39%), Positives = 271/451 (60%), Gaps = 18/451 (3%)

Query: 21  CIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKV 80
            +  + F+++++GCQMN +DS ++     ++GYE+V + + A+L+  NTC IR+KA +KV
Sbjct: 3   AVSGKTFYIETFGCQMNAHDSEKVVGTLLAEGYEQVATPEAAELVFYNTCSIRDKAEQKV 62

Query: 81  YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140
           +    R++N K   +K     +  V GCVAQ EGE+I  R+P V++V G  +Y RLPE+L
Sbjct: 63  F---NRLQNFKREGMK---GKIFGVLGCVAQQEGEKIFDRAPHVSLVAGSASYTRLPEML 116

Query: 141 ERARFG-KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
            +   G +RV       E+ F+          R     A+LTI EGCDK C +CVVP+TR
Sbjct: 117 VQLEAGNRRVTGLSLDTEETFD-----TPFTRRDNPHRAYLTIIEGCDKACAYCVVPFTR 171

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G E SR+   V+ EAR L + G  E+ LLGQNVN++R     G    F+ LL  ++EI G
Sbjct: 172 GPERSRTSESVMAEARGLTEKGYTEVQLLGQNVNSYRDPSPAG--WDFATLLAKVAEIPG 229

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           + R+RYTTSHPRD    ++ A    + +  ++HLPVQSGS ++L +M+R +T  EY + I
Sbjct: 230 MRRVRYTTSHPRDFVRPIVDAMDANEAICDHIHLPVQSGSSKVLAAMDRLYTRDEYLRRI 289

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
           D I+S +   ++++D I+GFPGETD DF  T+DL+D++ Y   FSFKYSPR  T    M 
Sbjct: 290 DWIKSAKRRYSLTTDIIIGFPGETDADFEQTLDLLDEVQYDSLFSFKYSPRPNTSALAME 349

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV 439
           +++ E  K  RLL LQ+K R  Q+  N   +G I EVL+E   +  G+ +GR+   +++ 
Sbjct: 350 DRIPEEEKQRRLLTLQEKQRAIQIRRNAEMIGSIQEVLVEGRNQALGQWIGRTTCNRTLN 409

Query: 440 LN----SKNHNIGDIIKVRITDVKISTLYGE 466
            +    + N  +G  + VR+T    ++L GE
Sbjct: 410 FSHPDTNGNELVGKYLPVRVTRSGPNSLVGE 440


>gi|329947487|ref|ZP_08294689.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Actinomyces sp. oral
           taxon 170 str. F0386]
 gi|328524766|gb|EGF51821.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Actinomyces sp. oral
           taxon 170 str. F0386]
          Length = 553

 Score =  427 bits (1098), Expect = e-117,   Method: Composition-based stats.
 Identities = 165/485 (34%), Positives = 268/485 (55%), Gaps = 39/485 (8%)

Query: 10  VAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDA------- 62
           +A     +  +  +P+ + V++ GCQMNV+DS  M  +    GY RV  + +A       
Sbjct: 4   LAATAPALDARGALPRTYHVRTLGCQMNVHDSEHMAGLLEGAGYLRVEDVPEAAARATDA 63

Query: 63  -----DLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEI 117
                D++++NTC +RE AA +++  LG++  +K    +E   + + VAGC+AQ  GE I
Sbjct: 64  GDGGADVVIINTCSVRENAATRLFGNLGQLAAVK----RERPGMQIAVAGCLAQQMGEGI 119

Query: 118 LRRSPIVNVVVGPQTYYRLPELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGV 176
           + R+P V+VV G      LP LLERAR      V+ + S++     L        R+   
Sbjct: 120 VERAPWVDVVFGTHNLDVLPALLERARHNSAAAVELEESLKVFPSTLPT-----RRESSY 174

Query: 177 TAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR 236
            A+++I  GC+  CTFC+VP  RG +  R    V+ E   +   G  E+TLLGQNVN+  
Sbjct: 175 AAWVSIAVGCNNTCTFCIVPSLRGKQRDRRPGDVLAEVEAVAAQGAIEVTLLGQNVNS-Y 233

Query: 237 GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQ 296
           G G  G++  F+ LL +   ++G+ R+R+T+ HP   +D +I+A    + +MP LH+P+Q
Sbjct: 234 GVGF-GDRGAFTKLLRAAGSVEGIERVRFTSPHPAAFTDDVIEAMATTEAVMPSLHMPLQ 292

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
           SGSDR+L++M R +    +  I+D++R V P+ AI++D IVGFPGET++DF+AT+D+V++
Sbjct: 293 SGSDRVLRAMRRSYRTQRFLGILDKVRGVMPEAAITTDIIVGFPGETEEDFQATLDVVER 352

Query: 357 IGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEV 416
             +A A++F+YSPR GTP ++  +QV   V  ER   L   +R      N+   G+++EV
Sbjct: 353 ARFASAYTFEYSPRPGTPAADRDDQVPAEVVKERYRRLDALVRRIAREENERQEGRVVEV 412

Query: 417 LI-EKHGKEKG---KLVGRSPWLQSVVL-----------NSKNHNIGDIIKVRITDVKIS 461
           L+ E  G+      ++ GR+   + V +                  GD++ VR+T     
Sbjct: 413 LVAEGEGRRDSATARISGRAADNRLVHVALPEGLAEDDYAGGAPRPGDMVSVRVTHGAPH 472

Query: 462 TLYGE 466
            L  +
Sbjct: 473 NLIAD 477


>gi|210621065|ref|ZP_03292450.1| hypothetical protein CLOHIR_00393 [Clostridium hiranonis DSM 13275]
 gi|210155049|gb|EEA86055.1| hypothetical protein CLOHIR_00393 [Clostridium hiranonis DSM 13275]
          Length = 489

 Score =  427 bits (1097), Expect = e-117,   Method: Composition-based stats.
 Identities = 173/443 (39%), Positives = 266/443 (60%), Gaps = 16/443 (3%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           ++GCQMN +DS  +  M    GYER   +  ADLI+ NTC +RE A  KVY  LG+++  
Sbjct: 54  TFGCQMNEHDSEELAYMLERMGYERTEKLYKADLIIYNTCAVRENAEMKVYGNLGQLKFT 113

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELL-ERARFGK 147
           K        D+ + + GC+ Q     EEI +    VN++ G    YR PELL ++   GK
Sbjct: 114 KRK----NPDVKIALCGCMMQQPHVVEEIKKNHKHVNLMFGTHNLYRFPELLYKQMTTGK 169

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
            +V+      +  E L       NRK  + AF+ I  GC+ FCT+C+VPYTRG E SR  
Sbjct: 170 NIVEVWDVDGEVIEGL-----HSNRKFELKAFVNIMYGCNNFCTYCIVPYTRGRERSREP 224

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
             ++DE ++L+ NG  E+TLLGQNVN+  GK L+    TF++LL  +++I+GL R+R+ T
Sbjct: 225 QDILDEIKELVANGTKEVTLLGQNVNS-YGKTLE-NPMTFAELLREVNKIEGLERIRFMT 282

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
           SHP+D+SD +I A  D + +  +LHLPVQ GS  +LK MNR +T  +Y  I+ ++R   P
Sbjct: 283 SHPKDLSDEVIYAMRDCEKICEFLHLPVQCGSSALLKKMNRHYTKEDYLNIVRKVRKEIP 342

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
           DIA S+D +VGFPGET +D + T+D++++  Y  AF+F YS R GTP + M +Q+ E+ K
Sbjct: 343 DIAFSTDIMVGFPGETLEDVQDTIDVIEETKYDSAFTFIYSKREGTPAAKMEDQIPEDEK 402

Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLNS-KNH 445
             R   + + +       N +   +++EVL+E    K+K +  G++   ++V  +S +++
Sbjct: 403 HRRFDEVLEHVNRIVNDINYSYQDKVVEVLVEGRSAKDKNRYTGKTRQNKTVNFDSNEDN 462

Query: 446 NIGDIIKVRITDVKISTLYGELV 468
            IG ++ V+IT  +  +L GE+V
Sbjct: 463 LIGKLVNVKITQPRSFSLNGEVV 485


>gi|255325173|ref|ZP_05366279.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Corynebacterium
           tuberculostearicum SK141]
 gi|255297738|gb|EET77049.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Corynebacterium
           tuberculostearicum SK141]
          Length = 520

 Score =  427 bits (1097), Expect = e-117,   Method: Composition-based stats.
 Identities = 159/470 (33%), Positives = 248/470 (52%), Gaps = 26/470 (5%)

Query: 18  VDQCIVPQRFF-VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA 76
           V+Q I   R + V+++GCQMNV+DS R+  +    GY       + DLIV NTC +RE A
Sbjct: 13  VEQTIADNRTYEVRTFGCQMNVHDSERISGLLEEAGYAAAGEGVEPDLIVFNTCAVRENA 72

Query: 77  AEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL 136
            +++Y  LG ++  K +       + + V GC+AQ + + +L  +P V+ V G      L
Sbjct: 73  DKRLYGTLGALKKTKENH----PGMQIAVGGCLAQKDKDTVLDNAPWVDAVFGTHNMAAL 128

Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
           P LLERAR             + F  +        R+     ++++  GC+  CTFC+VP
Sbjct: 129 PTLLERARHNDEAQVEIVDSLEAFPSVLPA----KRESAYAGWVSVSVGCNNTCTFCIVP 184

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT----FSDLLY 252
             RG E  R    ++ E + L+D GV E+TLLGQNVNA+     D +       FS LL 
Sbjct: 185 SLRGKEEDRRPGDILAEVKALVDQGVSEVTLLGQNVNAYGVNFADPDMPRDRFAFSKLLR 244

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
            + +I+GL RLR+T+ HP + +  +I A  +   + P LH+P+QSGSD++LK M R +  
Sbjct: 245 EVGKIEGLERLRFTSPHPAEFTSDVIDAMAETPAVCPQLHMPLQSGSDKVLKDMRRSYRT 304

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
            ++ +I+D +R   P  AI++D IVGFPGET++DF+ TM+LV +  +A AF+F+YSPR G
Sbjct: 305 KKFLRILDEVRDKIPHAAITTDIIVGFPGETEEDFQDTMELVRRARFASAFTFQYSPRPG 364

Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG----KL 428
           TP + M +Q+ + V  +R   L       Q   N   +G  +E+L++  G  K     ++
Sbjct: 365 TPAAEMEDQIPKEVVQDRFERLVALQDSIQAEENKKLIGTDVELLVQAEGGRKNDETHRM 424

Query: 429 VGRSPWLQSVVLN---------SKNHNIGDIIKVRITDVKISTLYGELVV 469
            GR+   + V            S     GD++  ++T      L  +  V
Sbjct: 425 TGRARDGRLVHFTPVDSDGTDISAEIRPGDVVHTQVTGAGSFFLLADAAV 474


>gi|319441566|ref|ZP_07990722.1| (dimethylallyl)adenosine tRNA methylthiotransferase
           [Corynebacterium variabile DSM 44702]
          Length = 529

 Score =  427 bits (1097), Expect = e-117,   Method: Composition-based stats.
 Identities = 154/468 (32%), Positives = 254/468 (54%), Gaps = 20/468 (4%)

Query: 11  AHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC 70
           A     +       + + V+++GCQMNV+DS R+  +     Y  V   D  D+IV NTC
Sbjct: 9   APATPAVPTLETPARTYEVRTFGCQMNVHDSERLSGLLEDSDYVPVGEGDTPDVIVFNTC 68

Query: 71  HIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGP 130
            +RE A  ++Y  LG+++ +K+S       + + V GC+AQ + + ++ R+P V+VV G 
Sbjct: 69  AVRENADNRLYGTLGQLKKVKDSH----PGMQIAVGGCMAQKDKDTVVSRAPWVDVVFGT 124

Query: 131 QTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190
                LP LL R+    R         ++F  +        R+     ++++  GC+  C
Sbjct: 125 HNMGSLPTLLSRSAHNSRAEVEIVDALEQFPSVLPA----KRESAYAGWVSVSVGCNNTC 180

Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG----EKCT 246
           TFC+VP  RG E  R    ++ E + L+D GV E+TLLGQNVNA+     D     ++  
Sbjct: 181 TFCIVPSLRGKEQDRRPGDILAEVKALVDQGVTEVTLLGQNVNAYGVHFSDPSLERDRSA 240

Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306
           FS LL +  EI+GL RLR+T+ HP + +D +I A  +  V+ P LH+P+QSGSD++LK M
Sbjct: 241 FSKLLRACGEIEGLERLRFTSPHPAEFTDDVIDAMAETPVVCPQLHMPLQSGSDKVLKDM 300

Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
            R + + ++  I+D++R   PD AI++D IVGFPGET++DF+ T+ +V++  +  A++F+
Sbjct: 301 RRSYRSTKFLGILDKVRDRLPDAAITTDIIVGFPGETEEDFQETLRVVEESRFTSAYTFQ 360

Query: 367 YSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG 426
           YSPR GTP + +  QV + V  +R   L++         N   +G  +E+L++  G  K 
Sbjct: 361 YSPRPGTPAAELDNQVPKAVVQDRYERLEELQERISGEENAKQIGCTVELLVQAGGGRKN 420

Query: 427 ----KLVGRSPWLQSVVLN----SKNHNIGDIIKVRITDVKISTLYGE 466
               ++ GR+   + V       +     GD+++V +T      L  +
Sbjct: 421 DRTRRMTGRARDGRLVHFAPGTLADQIRPGDVVEVAVTGAAPHFLTAD 468


>gi|284035911|ref|YP_003385841.1| RNA modification enzyme, MiaB family [Spirosoma linguale DSM 74]
 gi|283815204|gb|ADB37042.1| RNA modification enzyme, MiaB family [Spirosoma linguale DSM 74]
          Length = 513

 Score =  427 bits (1097), Expect = e-117,   Method: Composition-based stats.
 Identities = 164/485 (33%), Positives = 257/485 (52%), Gaps = 44/485 (9%)

Query: 21  CIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKV 80
            +  +R +++SYGCQMN  DS  +  +  + GY   +S D+AD+I LNTC IR+ A +KV
Sbjct: 34  SVGKKRLYIESYGCQMNFADSEIVAAVMRNAGYATTSSADEADVIFLNTCAIRDNAEQKV 93

Query: 81  YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140
              L  +  LK    ++  +LLV + GC+A+    ++L    +V++V GP  Y  +P+L+
Sbjct: 94  RHRLKHLTGLK----RQKPELLVGMLGCMAERLKTKLLEEEKVVDIVAGPDAYRDIPKLV 149

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           E A  G++ V+   S E+ +  +S +        GVTAF++I  GCD  C+FCVVP+TRG
Sbjct: 150 EEAESGQKAVNVFLSREETYADISPIRLN---SNGVTAFVSIMRGCDNMCSFCVVPFTRG 206

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-----------GLDGEKCT--- 246
            E SR    +V EA+ L D G  E+TLLGQNV++++ +              G   +   
Sbjct: 207 RERSRDPFSIVREAQDLFDQGYREVTLLGQNVDSYKWELGVRSEELGVADRTGRPASANM 266

Query: 247 --------------------FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV 286
                               F+ LL  +++I   +R+R++TSHP+D++D ++      D 
Sbjct: 267 DASATPNSSLLTTNTNTTTTFAHLLEMVAQIHPDLRVRFSTSHPKDITDDVLHTMARYDN 326

Query: 287 LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR-PDIAISSDFIVGFPGETDD 345
           +  Y+HLP QSG+ R+LK MNR +    Y   IDRIR +   D  IS+D I GF  ET++
Sbjct: 327 ICNYIHLPAQSGNSRVLKLMNRTYDRPWYIGKIDRIREILGEDCGISTDMISGFCTETEE 386

Query: 346 DFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVS 404
           + + ++ L+D + Y  A+ F YS R GT  +    + + E+VK  RL  +  +       
Sbjct: 387 EHQDSLSLMDYVHYDYAYMFAYSERPGTLAAKKYADDIPEDVKKRRLNEIIARQLAHSAE 446

Query: 405 FNDACVGQIIEVLIEKHGKE-KGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTL 463
            N   +GQ+  VLIE   K     L GR+   + VV    +H  G  + V +T+   +TL
Sbjct: 447 RNQRHIGQVQRVLIEGPSKRSDDFLCGRNDQNKMVVFPKGDHQKGQYVNVLVTECTSATL 506

Query: 464 YGELV 468
            GE+V
Sbjct: 507 RGEVV 511


>gi|293192300|ref|ZP_06609411.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Actinomyces odontolyticus
           F0309]
 gi|292820215|gb|EFF79209.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Actinomyces odontolyticus
           F0309]
          Length = 512

 Score =  427 bits (1097), Expect = e-117,   Method: Composition-based stats.
 Identities = 160/478 (33%), Positives = 261/478 (54%), Gaps = 35/478 (7%)

Query: 13  MVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDA---------- 62
           M +   D   +P+ + V++ GCQMN +DS RM  +    G   V  + +A          
Sbjct: 1   MNTMTQDGTALPRTYAVRTLGCQMNEHDSERMAGLLEQAGLIPVEQVPEAAARATDAGDM 60

Query: 63  --DLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRR 120
             D+IV+NTC +RE AA +++  LG++ ++K +R      + + V GC+AQ   + I+++
Sbjct: 61  GADVIVINTCSVRENAATRLFGNLGQLASVKRAR----PGMQIAVGGCLAQQMRDGIVQK 116

Query: 121 SPIVNVVVGPQTYYRLPELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAF 179
           +P V+ V G      LP LL RA   +   V+ + S++     L       +R+    A+
Sbjct: 117 APWVDAVFGTHNIDVLPALLRRAEHNRAAAVEIEESLKVFPSTLPT-----HRESAYAAW 171

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
           ++I  GC+  CTFC+VP+ RG E  R    ++ E   +   G  E+TLLGQNVN+  G G
Sbjct: 172 VSISVGCNNTCTFCIVPHLRGKERDRRPGDILAEVEAVASQGAIEVTLLGQNVNS-YGVG 230

Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
             GE+  F+DLL ++  ++G+ R+R+T+ HP   +D +I A      +MP LH+P+QSGS
Sbjct: 231 F-GERGAFADLLRAVGRVEGIERVRFTSPHPAAFTDDVIAAMAQTPTVMPSLHMPLQSGS 289

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
           D IL+ M R +    +  I++R+R+  P+ AI++D IVGFPGET++DF+AT+D+V++  +
Sbjct: 290 DAILRQMRRSYRRERFMGILERVRAAIPEAAITTDIIVGFPGETEEDFQATLDVVEQARF 349

Query: 360 AQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI- 418
           + AF+F YSPR GTP ++  +QV ++V  ER   L K         N A  G  +EVL+ 
Sbjct: 350 SSAFTFLYSPRPGTPAADREDQVPDDVALERYQRLVKLQERICAEDNAALAGTEVEVLVS 409

Query: 419 EKHGKEKG---KLVGRSPWLQSVVL-------NSKNHNIGDIIKVRITDVKISTLYGE 466
           E   ++ G   ++ GR+   + V +              GD+I+  +T      L  +
Sbjct: 410 EGDCRKDGATHRISGRARDNRLVHVALPEGMAEEDRPRPGDMIRATVTYGAPHHLIAD 467


>gi|332248854|ref|XP_003273580.1| PREDICTED: CDK5 regulatory subunit-associated protein 1 isoform 1
           [Nomascus leucogenys]
          Length = 623

 Score =  427 bits (1097), Expect = e-117,   Method: Composition-based stats.
 Identities = 154/479 (32%), Positives = 253/479 (52%), Gaps = 38/479 (7%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ ++++YGCQMNV D+     +    GY R +++ +AD+I+L TC IREKA + +++ L
Sbjct: 136 RKVYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCSIREKAEQTIWNRL 195

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            +++ LK  R +    L + + GC+A+   EEIL R  +V+++ GP  Y  LP+LL  A 
Sbjct: 196 HQLKALKTRRPRSRVPLKIGILGCMAERLKEEILNREKMVDILAGPDAYRDLPQLLAVAE 255

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G++  +   S+++ +  +  V          +AF++I  GCD  C++C+VP+TRG E S
Sbjct: 256 SGQQAANVLLSLDETYADVMPVQTS---PSATSAFVSIMRGCDNMCSYCIVPFTRGRERS 312

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG---------------KGLDGEKCT--- 246
           R ++ +++E +KL + G+ E+TLLGQNVN++R                +G      T   
Sbjct: 313 RPIASILEEVKKLSEQGLKEVTLLGQNVNSFRDNSEVQFNNAVPTNLSRGFTTNYKTKQG 372

Query: 247 ---FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
              F+ LL  +S +   +R+R+T+ HP+D  D +++   + D +   +HLP QSGS R+L
Sbjct: 373 GLRFAHLLDQVSRVDPEMRIRFTSPHPKDFPDEVLQLIHERDNICKQIHLPAQSGSSRVL 432

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           ++M R ++   Y +++  IR   P +++SSDFI GF GET++D   T+ L+ ++ Y   F
Sbjct: 433 EAMWRGYSREAYVELVHHIRESIPGVSLSSDFIAGFCGETEEDHVQTVSLLREVQYNIGF 492

Query: 364 SFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422
            F YS R  T     + + V E VK  RL  L    RE+    N   VG    VL+E   
Sbjct: 493 LFAYSMRQKTRAYHRLKDDVPEEVKLRRLEELITVFREEATKANQTSVGCTQLVLVEGLS 552

Query: 423 KEKGK-LVGRSPWLQSVVLNSKN------------HNIGDIIKVRITDVKISTLYGELV 468
           K     L GR+     V+                    GD + V+IT     TL G ++
Sbjct: 553 KRSATDLCGRNDGNLKVIFPDAEMEDVNNPGLRVRAQPGDYVLVKITSASSQTLRGHVL 611


>gi|256832276|ref|YP_003161003.1| RNA modification enzyme, MiaB family [Jonesia denitrificans DSM
           20603]
 gi|256685807|gb|ACV08700.1| RNA modification enzyme, MiaB family [Jonesia denitrificans DSM
           20603]
          Length = 534

 Score =  427 bits (1097), Expect = e-117,   Method: Composition-based stats.
 Identities = 169/489 (34%), Positives = 266/489 (54%), Gaps = 46/489 (9%)

Query: 11  AHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDA----DLIV 66
            H+  + +D    P+ + VK+ GCQMNV+DS  M  +    GY +     DA    D++V
Sbjct: 4   PHVPQRALDTQ--PRTYTVKTLGCQMNVHDSEHMAGLLEQAGYVKAPDGSDATGDADIVV 61

Query: 67  LNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNV 126
           +NTC +RE AA K+Y  LG++  +K    +    + + V GC+AQ +   I+ R+P V+V
Sbjct: 62  INTCAVRENAANKLYGQLGQLAAIK----RTKPGMQIAVGGCLAQKDRGVIVERAPWVDV 117

Query: 127 VVGPQTYYRLPELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEG 185
           V G      LP LLERAR  +   V+   S++     L        R+     +++I  G
Sbjct: 118 VFGTHNLDVLPVLLERARHNEEAQVEIAESLQVFPSTLPT-----RRESVYAGWVSISVG 172

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C+  CTFC+VP+ RG E  R   Q++ E   L+  G  E+TLLGQNVN++  +   G++ 
Sbjct: 173 CNNTCTFCIVPHLRGKERDRRPGQILAEVEALVAAGAVEVTLLGQNVNSYGVEF--GDRG 230

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
            F+ LL +  +I+GL R+R+T+ HP   +D +I+A      +MP LH+P+QSGSDRIL++
Sbjct: 231 AFAKLLRACGDIEGLERVRFTSPHPAAFTDDVIEAMAQTPNVMPSLHMPLQSGSDRILRA 290

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           M R + + ++  I+DR+R+  PD AI++D IVGFPGET++DF+AT+D+V +  +A AF+F
Sbjct: 291 MRRSYRSEKFLGILDRVRTAMPDAAITTDIIVGFPGETEEDFQATLDVVRQSRFASAFTF 350

Query: 366 KYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKE 424
           +YSPR GTP + +  Q+ + V  ER   L     E   + + A VG+ +EVL+ E  G++
Sbjct: 351 QYSPRPGTPAATLDGQLPKEVVQERYERLLAAQDEISAAESQALVGRTVEVLVAESDGRK 410

Query: 425 KG---KLVGRSPWLQSVVLNSKN------------------------HNIGDIIKVRITD 457
                +L GR+   + V                                 GD++KV +T 
Sbjct: 411 DDANHRLTGRAQDNRLVHFALPKGVDWDGAQVHPGDIRLADEVPTLVPRPGDMVKVDVTR 470

Query: 458 VKISTLYGE 466
                +  +
Sbjct: 471 GAPFYVVAD 479


>gi|88801432|ref|ZP_01116960.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Polaribacter irgensii
           23-P]
 gi|88782090|gb|EAR13267.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Polaribacter irgensii
           23-P]
          Length = 484

 Score =  426 bits (1096), Expect = e-117,   Method: Composition-based stats.
 Identities = 168/478 (35%), Positives = 259/478 (54%), Gaps = 25/478 (5%)

Query: 6   KLIGVAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLI 65
           K+ G A +    ++     ++ F++SYGCQMN+ DS  +  +   +GY     +++ADL+
Sbjct: 11  KIQGKALVTENKIENT---KKLFIESYGCQMNMNDSEIVAAILDKEGYNTTQILEEADLV 67

Query: 66  VLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVN 125
           ++NTC IREKA   V   L +   +K    K    + V V GC+A+   E+ L    IV+
Sbjct: 68  LVNTCSIREKAETSVRKRLQKYNAVK----KINPKMKVGVLGCMAERLKEKFLEEEKIVD 123

Query: 126 VVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEG 185
           +VVGP  Y  LP LL     G+  V+   S ++ +  +S V        GVTAF++I  G
Sbjct: 124 LVVGPDAYKDLPNLLSEVSEGRSAVNVILSKDETYGDISPVRLN---TNGVTAFVSITRG 180

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG----LD 241
           CD  CTFCVVP+TRG E SR    +++E + ++D    EITLLGQNV+++   G     D
Sbjct: 181 CDNMCTFCVVPFTRGRERSRDPKSILEEIQSMVDQNFKEITLLGQNVDSFLWFGGGLKKD 240

Query: 242 GEKCT---------FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLH 292
            +K T         F++LL   +      R R++TS+P+DMS  +I        +  YLH
Sbjct: 241 FKKATEMARATAIGFAELLDMCATKFPKTRFRFSTSNPQDMSLDVIHVMAKHINICKYLH 300

Query: 293 LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352
           LPVQSGS+ +LK+MNR+HT  EY  ++D I  + P++++S D IVGF GET++D + T+ 
Sbjct: 301 LPVQSGSNAMLKAMNRQHTREEYMTLVDNIFKIIPEMSLSQDMIVGFCGETEEDHQDTLA 360

Query: 353 LVDKIGYAQAFSFKYSPRLGTPG-SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVG 411
           L+  + Y   F F YS R GT   + M + V + VK  RL  +    +E  +      +G
Sbjct: 361 LMQYVKYDFGFMFTYSERPGTLAGNKMDDDVPQPVKKRRLQEIIDLQQEHALFRTQQHLG 420

Query: 412 QIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           +I E LIE   K+   +   R+      V   +++ +GD + V++ D   +TL G +V
Sbjct: 421 KIEEFLIEGTSKKNPDEWKARNTQNTIAVFKKEHYKLGDFVNVKVEDCTSATLKGTVV 478


>gi|291538852|emb|CBL11963.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Roseburia intestinalis
           XB6B4]
          Length = 496

 Score =  426 bits (1096), Expect = e-117,   Method: Composition-based stats.
 Identities = 168/468 (35%), Positives = 254/468 (54%), Gaps = 26/468 (5%)

Query: 15  SQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIRE 74
            Q+ ++   P  F V ++GCQMN  DS ++  +    GY      + AD ++ NTC +RE
Sbjct: 41  RQLSEEKGNPLTFHVSTFGCQMNARDSEKLVGILEKIGYVE-EDSEKADFVIYNTCTVRE 99

Query: 75  KAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQ--AEGEEILRRSPIVNVVVGPQT 132
            A  KVY  LG +    N   K+   +++ + GC+ Q     E+I +    VN++ G   
Sbjct: 100 NANNKVYGRLGYL----NGFQKKNPFMMIGLCGCMMQEPTVVEKIKQSYRFVNLIFGTHN 155

Query: 133 YYRLPELLERARFGK-----------RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLT 181
            Y+  EL+  A                 +D     +   E L +      RK    + + 
Sbjct: 156 IYKFAELIVTALENSYSEHAAGHGTSMTIDIWKDTDKIVEDLPV-----ERKYSFKSGVN 210

Query: 182 IQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD 241
           I  GC+ FC++C+VPY RG E SR   +++ E  +L  +GV EI LLGQNVN+  GK L+
Sbjct: 211 IMFGCNNFCSYCIVPYVRGRERSREPKEIIREVERLAADGVVEIMLLGQNVNS-YGKNLE 269

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
            +  TF+ LL  + ++ G+ R+R+ TSHP+D+SD LI+   +   +  +LHLP+QSGS R
Sbjct: 270 -QPMTFAQLLQEIEKVDGIERIRFMTSHPKDLSDDLIEVMKNSKKICKHLHLPLQSGSSR 328

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
           ILK MNRR+    Y +++D+IR+  PDIA+++D IVGFPGET++DF  TMD+V K+ Y  
Sbjct: 329 ILKLMNRRYDKEHYLELVDKIRAAVPDIALTTDIIVGFPGETEEDFEETMDVVRKVRYDS 388

Query: 362 AFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKH 421
           AF+F YS R GTP + M +Q+ ++V   R   L K+++        A  GQ + VLIE+ 
Sbjct: 389 AFTFIYSKRTGTPAAVMDDQIPDDVIKARFDRLLKEVQTISAEKAGALTGQTLPVLIEEK 448

Query: 422 GKEKGKLV-GRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            ++   LV GR      V L      IG I+ V++ + K     GE V
Sbjct: 449 NEQDAALVTGRLSNNSVVHLPGTEDMIGKIVDVKLLECKGFYYMGECV 496


>gi|84496889|ref|ZP_00995743.1| hypothetical protein JNB_05180 [Janibacter sp. HTCC2649]
 gi|84383657|gb|EAP99538.1| hypothetical protein JNB_05180 [Janibacter sp. HTCC2649]
          Length = 505

 Score =  426 bits (1096), Expect = e-117,   Method: Composition-based stats.
 Identities = 164/456 (35%), Positives = 256/456 (56%), Gaps = 24/456 (5%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNS------MDDADLIVLNTCHIREKAAE 78
           + + V+++GCQMNV+DS R+  +  + GY  V S       + AD++V NTC +RE A  
Sbjct: 5   KTYDVRTHGCQMNVHDSERLAGLLETAGYVDVASMAGDQQPEAADVVVFNTCAVRENADN 64

Query: 79  KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPE 138
           K+Y  LG++R  K    +   D+ + V GC+AQ + E I++R+P V+VV G      LP 
Sbjct: 65  KLYGNLGQLREAK----RHNPDMQIAVGGCMAQKDRETIVQRAPWVDVVFGTHNIGSLPA 120

Query: 139 LLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
           LL+RAR  KR         ++F           R     A+++I  GC+  CTFC+VP  
Sbjct: 121 LLDRARHNKRAEVEILESLERFPSTLPTR----RDSAYAAWVSISVGCNNTCTFCIVPSL 176

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258
           RG E  R   +++ E + L+D GV E+TLLGQNVN +  +   G++  F  LL +   I+
Sbjct: 177 RGKEADRRPGEILAEIQALVDQGVVEVTLLGQNVNTYGVEF--GDRFAFGKLLRACGAIE 234

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           GL R+R+T+ HP   +D +I A  +   +MP LH+P+QSGSD++LK M R + + ++  I
Sbjct: 235 GLERVRFTSPHPAAFTDDVIAAMAETPNVMPTLHMPLQSGSDKVLKDMRRSYRSEKFLGI 294

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           IDR+R   P+ AI++D IVGFPGET++DF  T+ +V++  ++ AF+F+YS R GTP + M
Sbjct: 295 IDRVREQIPNAAITTDIIVGFPGETEEDFAETLRVVEQSRFSSAFTFQYSIRPGTPAATM 354

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI---EKHGKE-KGKLVGRSPW 434
            +Q+ ++V  ER L L K   E   + N A  G  +EVL+   E        ++ GR+  
Sbjct: 355 ADQIPKDVVQERFLRLVKLQDEISWAENRALEGHTVEVLVAPIEGRKDNATSRMSGRARD 414

Query: 435 LQSVVLN----SKNHNIGDIIKVRITDVKISTLYGE 466
            + V  +     +    GD++   +T      L  +
Sbjct: 415 NRLVHFSIPSGGEVPRPGDMVSCDVTYGAPHHLVAD 450


>gi|149917237|ref|ZP_01905736.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Plesiocystis pacifica
           SIR-1]
 gi|149821844|gb|EDM81238.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Plesiocystis pacifica
           SIR-1]
          Length = 486

 Score =  426 bits (1096), Expect = e-117,   Method: Composition-based stats.
 Identities = 157/453 (34%), Positives = 264/453 (58%), Gaps = 19/453 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R +++++GCQMN  D+  +       G+ RV S  +ADL+++NTC +REKA ++VY    
Sbjct: 37  RVYMETFGCQMNEADTALVLGRLRQDGWVRVTSPAEADLVLVNTCAVREKAEDRVYGRTT 96

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           ++ + +N       DL++ + GC+A+   +++  R+P + +V GP +Y  +  L  +A  
Sbjct: 97  QLLDHRNR----NPDLVIGITGCMAEHLRDKLETRAPHIQLVAGPDSYRNIAALARKAIT 152

Query: 146 GKRVVDTDYSVEDKFERLSIV---------DGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
           G+R VD      + +E L  V         +   +R  GV+ ++TIQ GCDKFCTFCVVP
Sbjct: 153 GERAVDVHLDKAEVYEGLDPVIRSPGDDGSEAATSRDDGVSGYVTIQRGCDKFCTFCVVP 212

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256
           +TRG E      +V+ +AR+L + G  E+TLLGQ VN++  + +     +F++LL +++ 
Sbjct: 213 FTRGRERGVPPREVLRQARRLAEAGYRELTLLGQTVNSYAWEDV-----SFAELLRAVAA 267

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           ++G+ R+R+T+ +P D SD LI+       + PY+H+PVQ+G+D +L+ M R +T  +YR
Sbjct: 268 VEGIERIRFTSPYPVDFSDELIEVLATEPKVCPYVHMPVQAGADVVLERMRRGYTLADYR 327

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
           +++ ++R+  P IAIS+D +VGF GET+ D   T+ L++++ +  AF F YS R  T  S
Sbjct: 328 ELVRKLRAAVPHIAISTDIMVGFCGETEADHAETLALMEEVQFDFAFMFAYSDREITYAS 387

Query: 377 -NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWL 435
             +++ V +  K  RL  + +   +   +   A VGQ   VL+    K   KL+GR+P  
Sbjct: 388 KKLVDDVPQETKLRRLREVIELQEKHTRARLAARVGQRDRVLVVNTSKRGDKLLGRTPTF 447

Query: 436 QSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           Q V+L       G+ + V IT     +L+GEL+
Sbjct: 448 QKVLLPLGCAAPGEFVDVTITGTTGHSLFGELL 480


>gi|327404270|ref|YP_004345108.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Fluviicola taffensis DSM
           16823]
 gi|327319778|gb|AEA44270.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Fluviicola taffensis DSM
           16823]
          Length = 479

 Score =  426 bits (1096), Expect = e-117,   Method: Composition-based stats.
 Identities = 161/454 (35%), Positives = 255/454 (56%), Gaps = 17/454 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ +V+SYGCQMN  DS  +  +   +GY    ++D+AD++++NTC IRE A  +V + L
Sbjct: 29  KKLYVESYGCQMNFSDSEVVASIMTKEGYTTTRNIDEADVVLINTCSIRENAETRVRNRL 88

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
              +  K  +     +L+V + GC+A+   + +L    +V++V GP  Y  LP L++   
Sbjct: 89  TEFKKRKAEQ----PNLVVGILGCMAERLKQALLEEEQLVDLVAGPDAYRDLPNLIDEVG 144

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G+R V+   S E+ +  +S V      + GV+AF+TI  GCD  C+FCVVP+TRG E S
Sbjct: 145 TGQRAVNVLLSREETYADISPVRMD---QGGVSAFVTITRGCDNMCSFCVVPFTRGRERS 201

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG--------KGLDGEKCTFSDLLYSLSE 256
           R    +V E + L  NG  E+TLLGQNV+++R         K        F+ L+  ++ 
Sbjct: 202 RDPLTIVQECKDLFANGYREVTLLGQNVDSYRWNMSSKGVLKDETIPTTNFAQLMEMVAL 261

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           I   +R+R++TSHP+DM+D +++     + + PY+HLPVQSG+  +L+ MNR ++   Y 
Sbjct: 262 IHPDLRIRFSTSHPKDMTDDVLEMMAKYENICPYIHLPVQSGNSNVLERMNRGYSREWYL 321

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
           + I  I+ + PD AIS+D I GF GET+++ + T+ L+ ++GY  A+ FKYS R  T   
Sbjct: 322 ERIAAIKRIIPDCAISTDIITGFCGETEEEHQETVSLMREVGYDFAYMFKYSERPKTLAE 381

Query: 377 -NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLVGRSPW 434
               + V E VK +RL  +     +   + + + VG+I +VL+E   K       GR   
Sbjct: 382 RKFEDDVPEEVKGKRLEEIIALQLKNASAAHKSQVGKIAKVLVEGPSKRSAEHFSGRDGR 441

Query: 435 LQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
              VV    +   G  + V+ITD   +TL GELV
Sbjct: 442 NSKVVFPKGDSKKGQYVFVKITDYTSATLMGELV 475


>gi|167044878|gb|ABZ09545.1| putative uncharacterized protein family UPF0004 [uncultured marine
           crenarchaeote HF4000_APKG8D22]
          Length = 451

 Score =  426 bits (1096), Expect = e-117,   Method: Composition-based stats.
 Identities = 178/445 (40%), Positives = 275/445 (61%), Gaps = 10/445 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ ++ ++GCQMNV D+ RME + F  GY+R    +DADLI++NTC IREKA +K +S  
Sbjct: 2   KQVYLDTFGCQMNVADTDRMELVLFHSGYQRTLEKEDADLILVNTCSIREKAEQKTFSLF 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           G ++ LK +      DL++ + GC+ Q EGE++L+R P ++ V+GP     + + ++R R
Sbjct: 62  GGLKPLKMA----NPDLILGLTGCLGQQEGEKLLKRMPYLDFVIGPDQVEGIAQAVDRVR 117

Query: 145 F-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             GK  V T +  E  +  +  +     +  G +AF+ I +GCDKFCTFCVVP+TRG E 
Sbjct: 118 NTGKTFVWTGFDQEKVY-SIPELSRDLPKAPGPSAFVNIIKGCDKFCTFCVVPFTRGREK 176

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR   ++ +E R L+++G  EI LLGQNVN++  +GL  +   F +LLY ++EI G+ RL
Sbjct: 177 SREPEELFEEIRHLVNHGAKEIILLGQNVNSYGKRGLK-KPVPFHELLYGIAEIPGVQRL 235

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+TTSHP D +   I+A+ DLD+LM +LHLPVQSG++++LK+M R HT  EY  ++  ++
Sbjct: 236 RFTTSHPNDFTRDTIRAYRDLDILMNHLHLPVQSGNNQMLKAMRRDHTIEEYLDLLAELK 295

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           S  P I++S+D IVGFPGETD+ F  T+ +++++GY+ +F F YSPR GTP + + + V 
Sbjct: 296 SEVPGISLSTDIIVGFPGETDEAFGDTLKIMEEVGYSSSFMFAYSPRPGTPANELSDSVP 355

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVLNS 442
           E  K  RL  +      Q      + +G+ +EVLIE    + G    GR+P   +V +  
Sbjct: 356 EETKKRRLQEIIALQSRQTKQQGQSFIGKNVEVLIEGRSSKPGYVYKGRNPQYWNVNIQG 415

Query: 443 KN--HNIGDIIKVRITDVKISTLYG 465
                  G+ + V +  V   +L G
Sbjct: 416 GEGILQAGETVTVLVKQVSGHSLNG 440


>gi|319948419|ref|ZP_08022558.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Dietzia
           cinnamea P4]
 gi|319437923|gb|EFV92904.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Dietzia
           cinnamea P4]
          Length = 522

 Score =  426 bits (1096), Expect = e-117,   Method: Composition-based stats.
 Identities = 160/475 (33%), Positives = 261/475 (54%), Gaps = 29/475 (6%)

Query: 12  HMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVN-SMDDA-----DLI 65
                   + +  + + V+++GCQMNV+DS R+  +  + GY       D A     DL+
Sbjct: 6   PAAENAPAEGVDRRTYQVRTFGCQMNVHDSERLSGVLDAAGYVPFEGDADPATGSLPDLV 65

Query: 66  VLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVN 125
           V NTC +RE A  ++Y  LG +R  K++       L + V GC+AQ + + ++ R+P V+
Sbjct: 66  VFNTCAVRENADNRLYGTLGHLRPWKDA----NPRLQIAVGGCLAQKDKDAVVSRAPWVD 121

Query: 126 VVVGPQTYYRLPELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQE 184
           VV G      LP LL+R+R  +R  V+   S++     L        R      ++++  
Sbjct: 122 VVFGTHNLGHLPTLLDRSRHNERAEVEIADSLQHFPSTLPAT-----RDSAYAGWVSVSV 176

Query: 185 GCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK 244
           GC+  CTFC+VP  RG E+ R   +V+ E + L D GV E+TLLGQNVNA+     D ++
Sbjct: 177 GCNNTCTFCIVPSLRGKEVDRRPGEVLAEMQALADEGVLEVTLLGQNVNAYGRSFHDPDE 236

Query: 245 CT----FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300
            +    F+ LL +   I+G+ R+R+T+ HP + +D +I+A      + P LH+P+QSGSD
Sbjct: 237 PSDKGAFAKLLRAAGRIEGIERIRFTSPHPAEFTDDVIEAMASTPTVCPQLHMPLQSGSD 296

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
           R+L++M R + +  +  IIDR+R+  P  AI++D IVGFPGET++DF+AT+D+V+K  ++
Sbjct: 297 RVLRAMRRSYRSERFLGIIDRVRAAMPHAAITTDIIVGFPGETEEDFQATLDVVEKARFS 356

Query: 361 QAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE- 419
            AF+F+YSPR GTP + M +Q+ + V  ER   L        +  N A VG+++E+L+  
Sbjct: 357 SAFTFQYSPRPGTPAATMEDQIPKAVVQERYERLIALQERITLEENQAQVGRVVELLVTA 416

Query: 420 ---KHGKEKGKLVGRSPWLQSVVL-----NSKNHNIGDIIKVRITDVKISTLYGE 466
              +      ++ GR+   + V        +     GD++  R+T      L  +
Sbjct: 417 DEGRKDAATARMTGRARDGRLVHFAPVGEAADRVRPGDVVTTRVTAAAPHHLLAD 471


>gi|152965467|ref|YP_001361251.1| RNA modification enzyme, MiaB family [Kineococcus radiotolerans
           SRS30216]
 gi|229890611|sp|A6W848|MIAB_KINRD RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|151359984|gb|ABS02987.1| RNA modification enzyme, MiaB family [Kineococcus radiotolerans
           SRS30216]
          Length = 510

 Score =  426 bits (1096), Expect = e-117,   Method: Composition-based stats.
 Identities = 167/470 (35%), Positives = 251/470 (53%), Gaps = 27/470 (5%)

Query: 14  VSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYER---------VNSMDDADL 64
            +   D     + + V+++GCQMNV+DS R+  +    GY R          ++  + D+
Sbjct: 8   PAGADDTVAAARTYQVRTFGCQMNVHDSERLSGLLEDAGYVRFDEAGRPEGSDAPVEPDV 67

Query: 65  IVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIV 124
           +V NTC +RE A  K+Y  LG +  +K  R      + + V GC+AQ +  EI+R++P V
Sbjct: 68  VVFNTCAVRENADNKLYGNLGHLAPVKERR----PGMQIAVGGCLAQKDRGEIVRKAPWV 123

Query: 125 NVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQE 184
           +VV G      LP LLERAR             + F           R+    A+++I  
Sbjct: 124 DVVFGTHNVGSLPVLLERARHNAEAQVEILESLETFPSTLPTR----RESPYAAWVSISV 179

Query: 185 GCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK 244
           GC+  CTFC+VP  RG E  R    V+ E   L+  GV E+TLLGQNVN +  +   G+K
Sbjct: 180 GCNNTCTFCIVPALRGKEKDRRPGDVLAEIEALVGEGVLEVTLLGQNVNTYGVEF--GDK 237

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304
             F  LL +   I+GL R+R+T+ HP   +D ++ A  +   +MP LH+P+QSGSDR+LK
Sbjct: 238 LAFGKLLRATGGIEGLERVRFTSPHPSSFTDDVVDAMAETPNVMPSLHMPLQSGSDRVLK 297

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
           +M R +    +  IIDR+RS  PD AI++D IVGFPGETD+DF  T+ +V++  ++ AF+
Sbjct: 298 AMRRSYRQSRFLGIIDRVRSSIPDAAITTDIIVGFPGETDEDFEQTLHVVEQARFSSAFT 357

Query: 365 FKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGK 423
           F+YSPR GTP + M +Q+ + V  ER   L           N A  G+ +EVL+ E  G+
Sbjct: 358 FQYSPRPGTPAATMGDQIPKRVVQERYERLTALQDRITYEDNQAQTGRTLEVLVAEGEGR 417

Query: 424 EKG---KLVGRSPWLQSVVLN----SKNHNIGDIIKVRITDVKISTLYGE 466
           +     +L GR+P  + V       ++    GD+  V +T      L  +
Sbjct: 418 KDAATRRLSGRAPDNRLVHFALPEGAQAPRPGDVATVTVTRGAPHYLEAD 467


>gi|170781615|ref|YP_001709947.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Clavibacter
           michiganensis subsp. sepedonicus]
 gi|229890481|sp|B0RGZ1|MIAB_CLAMS RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|169156183|emb|CAQ01325.1| conserved hypothetical protein [Clavibacter michiganensis subsp.
           sepedonicus]
          Length = 530

 Score =  426 bits (1095), Expect = e-117,   Method: Composition-based stats.
 Identities = 170/468 (36%), Positives = 260/468 (55%), Gaps = 21/468 (4%)

Query: 10  VAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNT 69
           VA  V         P+ + V++YGCQMNV+DS R+     + GY      + AD++V+NT
Sbjct: 4   VAEHVRAAPSSVDRPRTYEVRTYGCQMNVHDSERLTGSLEAAGYVSAEGAE-ADIVVINT 62

Query: 70  CHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG 129
           C +RE A  K+Y  LG +  +K    +    + + V GC+AQ +   +L ++P V+VV G
Sbjct: 63  CAVRENADNKLYGNLGHLAGVK----RRHEGMQIAVGGCLAQKDRATVLEKAPWVDVVFG 118

Query: 130 PQTYYRLPELLERARF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
                 LP LLERAR  G+  ++   S+E     L        R    + +++I  GC+ 
Sbjct: 119 THNMGALPTLLERARHNGEAQLEILESLETFPSTLPT-----KRDEIASGWVSISVGCNN 173

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS 248
            CTFC+VP  RG E  R    ++ E + L+D+G  E+TLLGQNVN++  +   G++  F 
Sbjct: 174 TCTFCIVPALRGKEKDRRPGDILAEIQALVDDGAVEVTLLGQNVNSYGVEF--GDRQAFG 231

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
            LL +   I+GL R+R+T+ HP   +D +I A  +   +MP LH+P+QSGSDRILK+M R
Sbjct: 232 KLLRAAGAIEGLERIRFTSPHPAAFTDDVIDAMAETPAVMPQLHMPLQSGSDRILKAMRR 291

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
            + +  +  I+DR+R+  PD AI++D IVGFPGET++DF+ T+ +V+   ++ AF+F+YS
Sbjct: 292 SYRSERFLGILDRVRTRVPDAAITTDIIVGFPGETEEDFQETLRVVEAARFSSAFTFQYS 351

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKH-GKEKG- 426
            R GTP + M EQV  +V  ER   L           N   VG+ +EVL+  H G++ G 
Sbjct: 352 IRPGTPAATMEEQVPADVVKERYGRLTALQERISHEENQRVVGRTVEVLVSAHEGRKDGD 411

Query: 427 --KLVGRSPWLQSVVLN----SKNHNIGDIIKVRITDVKISTLYGELV 468
             ++ GR+   + V L+    S     GD + V +T      L  + V
Sbjct: 412 TRRVTGRAQDGRLVHLDVPEGSAEPRPGDAVDVEVTRAAPFHLIADSV 459


>gi|255280937|ref|ZP_05345492.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bryantella formatexigens
           DSM 14469]
 gi|255268385|gb|EET61590.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bryantella formatexigens
           DSM 14469]
          Length = 518

 Score =  426 bits (1095), Expect = e-117,   Method: Composition-based stats.
 Identities = 159/440 (36%), Positives = 240/440 (54%), Gaps = 14/440 (3%)

Query: 30  KSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRN 89
           K++GCQMN  DS ++  +    GY      + ADL++ NTC +RE A  KVY  LG +  
Sbjct: 88  KTFGCQMNARDSEKLTGILELIGYTITED-EHADLVIYNTCTVRENANLKVYGRLGVLGG 146

Query: 90  LKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147
           +K  +       L+ + GC+ Q     E+I +    V+++ G    Y+  ELL     G 
Sbjct: 147 MKKKQ----PHKLIALCGCMMQEPEVVEKIRKSYRFVDLIFGTHNIYKFAELLAACLEGD 202

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
            ++   +   DK      V+  Y  K G    + I  GC+ FC++C+VPY RG E SR  
Sbjct: 203 GMIIDVWKDTDKIVENLPVERKYPFKSG----VNIMFGCNNFCSYCIVPYVRGRERSREP 258

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
            +++ E  +L  +GV E+ LLGQNVN+  GK L  E  +F+ LL  + +I G+ R+R+ T
Sbjct: 259 REILREIERLAADGVVEVMLLGQNVNS-YGKNLP-EPMSFAQLLREVEKIDGIKRIRFMT 316

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
           SHP+D+SD LI+     + +  ++HLP+QSGS RILK MNRR+T  +Y  +++++R   P
Sbjct: 317 SHPKDLSDELIEVMASSEKICRHMHLPLQSGSSRILKIMNRRYTKEQYLALVEKLRRAIP 376

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
           DI++++D IVGFPGET++DF  T+D+V +  Y  AF+F YS R GTP + M  QV E V 
Sbjct: 377 DISLTTDIIVGFPGETEEDFEETLDVVRRARYDSAFTFIYSKRTGTPAAAMENQVPEEVV 436

Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSVVLNSKNHN 446
            ER   L   ++E          GQ + VL E+ + ++   L GR      V        
Sbjct: 437 KERFDRLLALVQEISGEMAARLTGQTLPVLAEEVNSQDASLLTGRLSNNLLVHFPGDASL 496

Query: 447 IGDIIKVRITDVKISTLYGE 466
           IG I+ V + + +     GE
Sbjct: 497 IGKIVDVHLQECRGFYYMGE 516


>gi|291519342|emb|CBK74563.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Butyrivibrio fibrisolvens
           16/4]
          Length = 477

 Score =  426 bits (1095), Expect = e-117,   Method: Composition-based stats.
 Identities = 167/444 (37%), Positives = 255/444 (57%), Gaps = 17/444 (3%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V ++GCQMN  DS ++  +    GY    S ++AD ++ NTC +RE A  KVY  LG + 
Sbjct: 44  VTTFGCQMNARDSEKLLGILKQIGYVETES-ENADFVIYNTCTVRENANNKVYGHLGILH 102

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQ--AEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
             K    K+  D+++ + GC+ Q     E +      V+++ G    Y+  EL   A   
Sbjct: 103 GYK----KKNKDMMIGLCGCMMQEPTVIEHLKANYKFVDLIFGTHNLYKFAELFTTALLN 158

Query: 147 KR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
           K+  ++D     +   E L I     +RK    + + I  GC+ FC++C+VPY RG E S
Sbjct: 159 KKGMIIDIWKDTDKIVENLPI-----SRKYPFKSGVNISFGCNNFCSYCIVPYVRGRERS 213

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R    +V E ++L+ +GV E+ LLGQNVN+  G GL+ EK +F+DLL  +++I+GL R+R
Sbjct: 214 RKPEDIVAEIKELVADGVVEVMLLGQNVNS-YGVGLE-EKISFADLLRMVNDIEGLKRIR 271

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           + T HP+D+SD LI+A    D +  ++HLP+QSGS  ILK MNRR+T   Y  +++++R+
Sbjct: 272 FMTPHPKDLSDDLIEAMATCDKVCHHMHLPLQSGSTEILKKMNRRYTKEHYLGLVEKLRA 331

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             PD+AI++D IVGFPGET++DF  TMD+VDK+ Y  AF+F YS R GTP + M  QV E
Sbjct: 332 RIPDVAITTDIIVGFPGETEEDFLDTMDVVDKVHYDSAFTFIYSKRTGTPAAAMENQVPE 391

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GRSPWLQSVVLNSK 443
           +V  +R   L   +++       +  G + EVL+E+  ++   LV G+     +V     
Sbjct: 392 DVVKDRFDRLLALVQKHGHDKVKSLEGTVQEVLVEEVNEQDNTLVSGKLANNVTVHFPGD 451

Query: 444 NHNIGDIIKVRITDVKISTLYGEL 467
              IG I+ VR+   K     GE+
Sbjct: 452 ESMIGKIVNVRLNCCKGFYFIGEI 475


>gi|88608596|ref|YP_506702.1| tRNA-i(6)A37 modification enzyme MiaB [Neorickettsia sennetsu str.
           Miyayama]
 gi|123763693|sp|Q2GCU4|MIAB_NEOSM RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|88600765|gb|ABD46233.1| tRNA-i(6)A37 modification enzyme MiaB [Neorickettsia sennetsu str.
           Miyayama]
          Length = 471

 Score =  426 bits (1095), Expect = e-117,   Method: Composition-based stats.
 Identities = 217/442 (49%), Positives = 295/442 (66%), Gaps = 10/442 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++F +K+YGCQMNVYDS  +E +    G+      +DADLI+LNTC+IREKAAEK+YS L
Sbjct: 29  KKFHIKTYGCQMNVYDSEMIEKIVSGLGFTLSERAEDADLIILNTCNIREKAAEKLYSEL 88

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA- 143
           G+IR L+    K+   +L+VVAGCVAQAEGEEI+RR+  V+VVVGPQ+ + LPEL+ +  
Sbjct: 89  GQIRLLQK---KKQERILIVVAGCVAQAEGEEIMRRAENVDVVVGPQSIHSLPELIAKVN 145

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           R   + +  ++   +KF+ L+  +    R    +AFL+IQEGCDKFC FCVVPYTRG E 
Sbjct: 146 RQSGKAIKMEFDPIEKFDYLA-EETRKRRVPQSSAFLSIQEGCDKFCAFCVVPYTRGAEY 204

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT-FSDLLYSLSEIKGLVR 262
           SRS  +V  EA  L   GV EITLLGQNVN + G    G K      L+  L +I  L R
Sbjct: 205 SRSTEEVYREALSLTTKGVKEITLLGQNVNGYHGTLDSGNKVLNLGQLISRLGKIPSLKR 264

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +RYTTSHP DM   L  AH +   LMP++HLPVQSGSD+ILK MNR++T  +Y +II+  
Sbjct: 265 IRYTTSHPVDMHKELYDAHANESKLMPFVHLPVQSGSDKILKQMNRKYTTADYLKIINEF 324

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           ++ R DIA SSDFIVGFPGE+DDDF+ T+ L++++ YAQ +SFKYSPR GTPG+    Q+
Sbjct: 325 QNARSDIAFSSDFIVGFPGESDDDFQQTLALIEQVNYAQCYSFKYSPRPGTPGATYP-QI 383

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
            E  K  RL  LQ+ L+E+Q+ FN   +G+ + VL +K  K   K+ GR+ ++Q V  + 
Sbjct: 384 SEETKNTRLQKLQQLLKEKQLEFNKKMIGKTVTVLFDK--KHPDKISGRTEYMQQV-FSD 440

Query: 443 KNHNIGDIIKVRITDVKISTLY 464
            ++ +  I+ +R+ D    TL 
Sbjct: 441 DSNLLDKIVTMRVEDASTFTLK 462


>gi|260760773|ref|ZP_05873116.1| RNA modification protein [Brucella abortus bv. 2 str. 86/8/59]
 gi|260671205|gb|EEX58026.1| RNA modification protein [Brucella abortus bv. 2 str. 86/8/59]
          Length = 380

 Score =  426 bits (1095), Expect = e-117,   Method: Composition-based stats.
 Identities = 227/377 (60%), Positives = 291/377 (77%)

Query: 90  LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149
           ++++R  +G +L + VAGCVAQAEG+EILRR+P V++V+GPQTY+RLP  L R R G++V
Sbjct: 1   MRDARAADGKELTIGVAGCVAQAEGQEILRRAPNVDLVIGPQTYHRLPNALARVRGGEKV 60

Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209
           V+TDY++EDKFE L        RKRGV+AFLT+QEGCDKFCTFCVVPYTRG E+SRS+ Q
Sbjct: 61  VETDYAIEDKFEHLPAPRREETRKRGVSAFLTVQEGCDKFCTFCVVPYTRGSEVSRSVKQ 120

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSH 269
           +V EA +L D+GV E+TLLGQNVNAW G+G DG +    +LL+ L+ I G+ RLRYTTSH
Sbjct: 121 IVAEAERLADSGVRELTLLGQNVNAWHGEGEDGREWGLGELLFRLARIPGIARLRYTTSH 180

Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329
           PRDM D LI AH DL  LMPYLHLPVQSGSDRILK+MNRRH A EY ++I+RIR+VRPD+
Sbjct: 181 PRDMDDSLIAAHRDLRQLMPYLHLPVQSGSDRILKAMNRRHKADEYLRLIERIRNVRPDM 240

Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAE 389
           A+S DFIVGFPGETD DF  TM LV  + YAQA+SFKYSPR GTPG+++ + V+E VK E
Sbjct: 241 ALSGDFIVGFPGETDQDFEDTMQLVRDVNYAQAYSFKYSPRPGTPGADLDDHVEEAVKDE 300

Query: 390 RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGD 449
           RL  LQ  L  QQ +F D+ +G+ ++VL+EK G+E G++VGRSPWL  V+++     +GD
Sbjct: 301 RLQRLQALLSAQQYAFQDSMIGRKMDVLLEKPGREAGQMVGRSPWLLPVIIDDNKDRVGD 360

Query: 450 IIKVRITDVKISTLYGE 466
           II V+I     ++L  +
Sbjct: 361 IIHVKIVSTGTNSLIAQ 377


>gi|226366166|ref|YP_002783949.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Rhodococcus
           opacus B4]
 gi|226244656|dbj|BAH55004.1| putative tRNA-thiotransferase [Rhodococcus opacus B4]
          Length = 525

 Score =  426 bits (1095), Expect = e-117,   Method: Composition-based stats.
 Identities = 156/464 (33%), Positives = 252/464 (54%), Gaps = 22/464 (4%)

Query: 16  QIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREK 75
             +DQ    + + V++YGCQMNV+DS R+  +    GY +  +    DL+V NTC +RE 
Sbjct: 22  DTIDQTPH-RSYEVRTYGCQMNVHDSERLSGLLEDAGYTKAAAGQSPDLVVFNTCAVREN 80

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135
           A  K+Y  L  +   K        D+ + V GC+AQ + + +++++P V+VV G      
Sbjct: 81  ADNKLYGNLSHLAPAKEQ----NPDMQIAVGGCLAQKDRDVVVKKAPWVDVVFGTHNIGS 136

Query: 136 LPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
           LP LL+RAR  +R         + F           R+     +++I  GC+  CTFC+V
Sbjct: 137 LPALLDRARHNQRAEVEILDALEAF----PSTLPAKRESAYAGWVSISVGCNNTCTFCIV 192

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT----FSDLL 251
           P  RG E+ R    ++ E + L++ GV E+TLLGQNVNA+     D ++      F+ LL
Sbjct: 193 PALRGKEVDRRPGDILAEVQALVNEGVVEVTLLGQNVNAYGVSFADPDQPRDRGAFAALL 252

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
            +  EI GL R+R+T+ HP + +D +I+A  +   + P LH+P+QSGSDR+LK+M R + 
Sbjct: 253 RACGEIDGLERVRFTSPHPAEFTDDVIEAMAETPNVCPQLHMPLQSGSDRVLKAMRRSYR 312

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
              +  II+++RS  P  AI++D IVGFPGET++DF+ T+D+V +  +  AF+F+YS R 
Sbjct: 313 KSRFLGIIEKVRSAMPHAAITTDIIVGFPGETEEDFQDTLDVVRQARFTSAFTFQYSKRP 372

Query: 372 GTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEK---GK 427
           GTP ++M +Q+ + V  ER   L     +  +  N   VG  +E+L+    G++     +
Sbjct: 373 GTPAADMDDQLPKAVVQERYERLIALQEQITLEENQKLVGAEVELLVATGEGRKNAETAR 432

Query: 428 LVGRSPWLQSVVLN-----SKNHNIGDIIKVRITDVKISTLYGE 466
           + GR+   + V          N   GD++ + I+      L  +
Sbjct: 433 MSGRARDGRLVHFRPEGNLDGNVRPGDVVTIVISAAAPHHLVAD 476


>gi|315604451|ref|ZP_07879517.1| tRNA-I(6)A37 thiotransferase [Actinomyces sp. oral taxon 180 str.
           F0310]
 gi|315314157|gb|EFU62208.1| tRNA-I(6)A37 thiotransferase [Actinomyces sp. oral taxon 180 str.
           F0310]
          Length = 512

 Score =  426 bits (1095), Expect = e-117,   Method: Composition-based stats.
 Identities = 157/478 (32%), Positives = 258/478 (53%), Gaps = 35/478 (7%)

Query: 13  MVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDA---------- 62
           M +      ++P+ + V++ GCQMN +DS RM  +    G   V  + +A          
Sbjct: 1   MNTMTPQDAVLPRTYAVRTLGCQMNEHDSERMAGLLEQAGLIPVEKVPEAAARATDAGDM 60

Query: 63  --DLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRR 120
             D++V+NTC +RE AA +++  LG++  +K  R      + + V GC+AQ   + I+ +
Sbjct: 61  GADVVVINTCSVRENAATRLFGNLGQLAAVKRKR----PGMQIAVGGCLAQQMRDGIVEK 116

Query: 121 SPIVNVVVGPQTYYRLPELLERARFG-KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAF 179
           +P V+ V G      LP LL RA    +  V+ + S++     L       +R+    A+
Sbjct: 117 APWVDAVFGTHNIDVLPALLRRAEHNSEAAVEIEESLKVFPSTLPT-----HRESVYAAW 171

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
           ++I  GC+  CTFC+VP  RG E  R    ++ E   +   G  E+TLLGQNVN+  G G
Sbjct: 172 VSISVGCNNTCTFCIVPRLRGKERDRRPGDILAEVEAVASQGAIEVTLLGQNVNS-YGVG 230

Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
             GE+  F+DLL ++  + G+ R+R+T+ HP   +D +I+A  +   +MP LH+P+QSGS
Sbjct: 231 F-GERGAFADLLRAVGRVDGIERVRFTSPHPAAFTDDVIEAMANTPTVMPSLHMPLQSGS 289

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
           D +L+ M R +    +  I++R+R+  PD AI++D IVGFPGET++DF+AT+D+V++  +
Sbjct: 290 DAVLRQMRRSYRRERFMGILERVRAAIPDAAITTDIIVGFPGETEEDFQATLDVVEQARF 349

Query: 360 AQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI- 418
             AF+F YSPR GTP ++  ++V ++V  ER   L           N A VG  +EVL+ 
Sbjct: 350 TSAFTFLYSPRPGTPAADREDRVPDDVALERYQRLVALQESICAQDNAALVGTDVEVLVS 409

Query: 419 EKHGKEKG---KLVGRSPWLQSVVL-------NSKNHNIGDIIKVRITDVKISTLYGE 466
              G++ G   ++ GR+   + V +         +    GD+I+  +T      L  +
Sbjct: 410 SGDGRKDGATHRISGRARDNRLVHVALPAGLAAGERPRPGDMIRATVTYGAPHHLIAD 467


>gi|326773675|ref|ZP_08232958.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Actinomyces viscosus
           C505]
 gi|326636905|gb|EGE37808.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Actinomyces viscosus
           C505]
          Length = 553

 Score =  425 bits (1094), Expect = e-117,   Method: Composition-based stats.
 Identities = 163/472 (34%), Positives = 265/472 (56%), Gaps = 39/472 (8%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDA------------DLIVLNTC 70
           +P+ + V++ GCQMNV+DS  M  +    GY RV  + +A            D++++NTC
Sbjct: 17  LPRTYHVRTLGCQMNVHDSEHMAGLLERAGYLRVEDVPEAASRATDAGDGGADVVIINTC 76

Query: 71  HIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGP 130
            +RE AA +++  LG++  +K    +E   + + VAGC+AQ  GE I+ R+P V+VV G 
Sbjct: 77  SVRENAATRLFGNLGQLAAVK----RERPGMQIAVAGCLAQQMGEGIVERAPWVDVVFGT 132

Query: 131 QTYYRLPELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKF 189
                LP LLERAR      V+ + S++     L        R+    A+++I  GC+  
Sbjct: 133 HNLDVLPALLERARHNSAAAVELEESLKVFPSTLPT-----RRESSYAAWVSIAVGCNNT 187

Query: 190 CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSD 249
           CTFC+VP  RG +  R    V+ E   +   G  E+TLLGQNVN+  G G  G++  F+ 
Sbjct: 188 CTFCIVPSLRGKQRDRRPGDVLAEVEAVAAQGAIEVTLLGQNVNS-YGVGF-GDRGAFAK 245

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
           LL +   ++G+ R+R+T+ HP   +D +I+A    + +MP LH+P+QSGSDR+L++M R 
Sbjct: 246 LLRAAGSVEGIERVRFTSPHPAAFTDDVIEAMATTEAVMPSLHMPLQSGSDRVLRAMRRS 305

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369
           +    +  I+D++R+V P+ AI++D IVGFPGET++DF+AT+D+V++  +A A++F+YSP
Sbjct: 306 YRTQRFLGILDKVRAVMPEAAITTDIIVGFPGETEEDFQATLDVVEQARFASAYTFEYSP 365

Query: 370 RLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEK--- 425
           R GTP ++  +QV   V  +R   L   +R      N+   G+++EVL+ E  G+     
Sbjct: 366 RPGTPAADRDDQVPTEVVKDRYRRLDALVRRIAHEENERQEGRVVEVLVAEGEGRRDVVT 425

Query: 426 GKLVGRSPWLQSVVL-----------NSKNHNIGDIIKVRITDVKISTLYGE 466
            ++ GR+   + V +                  GD++ VR+T      L  +
Sbjct: 426 ARISGRAADNRLVHVALPEGLAEDDYAGGAPRPGDMVTVRVTHGAPHNLIAD 477


>gi|311739645|ref|ZP_07713480.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Corynebacterium
           pseudogenitalium ATCC 33035]
 gi|311305461|gb|EFQ81529.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Corynebacterium
           pseudogenitalium ATCC 33035]
          Length = 520

 Score =  425 bits (1094), Expect = e-117,   Method: Composition-based stats.
 Identities = 159/470 (33%), Positives = 247/470 (52%), Gaps = 26/470 (5%)

Query: 18  VDQCIVPQRFF-VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA 76
           V+Q I   R + V+++GCQMNV+DS R+  +    GY       + DLIV NTC +RE A
Sbjct: 13  VEQTIADNRTYEVRTFGCQMNVHDSERISGLLEEAGYAAAGEGVEPDLIVFNTCAVRENA 72

Query: 77  AEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL 136
            +++Y  LG ++  K +       + + V GC+AQ + + +L  +P V+ V G      L
Sbjct: 73  DKRLYGTLGALKKTKENH----PGMQIAVGGCLAQKDKDTVLDNAPWVDAVFGTHNMAAL 128

Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
           P LLERAR             + F  +        R+     ++++  GC+  CTFC+VP
Sbjct: 129 PTLLERARHNDEAQVEIVDSLEAFPSVLPA----KRESAYAGWVSVSVGCNNTCTFCIVP 184

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT----FSDLLY 252
             RG E  R    ++ E + L+D GV E+TLLGQNVNA+     D         FS LL 
Sbjct: 185 SLRGKEEDRRPGDILAEVKALVDQGVSEVTLLGQNVNAYGVNFADPNMPRDRFAFSKLLR 244

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
            + +I+GL RLR+T+ HP + +  +I A  +   + P LH+P+QSGSD++LK M R +  
Sbjct: 245 EVGKIEGLERLRFTSPHPAEFTSDVIDAMAETPAVCPQLHMPLQSGSDKVLKDMRRSYRT 304

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
            ++ +I+D +R   P  AI++D IVGFPGET++DF+ TM+LV +  +A AF+F+YSPR G
Sbjct: 305 KKFLRILDEVRDKIPHAAITTDIIVGFPGETEEDFQDTMELVRRARFASAFTFQYSPRPG 364

Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG----KL 428
           TP + M +Q+ + V  +R   L       Q   N   +G  +E+L++  G  K     ++
Sbjct: 365 TPAAEMEDQIPKEVVQDRFERLVALQDSIQAEANKMLIGTDVELLVQAEGGRKNDETHRM 424

Query: 429 VGRSPWLQSVVLN---------SKNHNIGDIIKVRITDVKISTLYGELVV 469
            GR+   + V            S     GD++  ++T      L  +  V
Sbjct: 425 TGRARDGRLVHFTPVDSDGTDISAEIRPGDVVHTQVTGAGSFFLLADAAV 474


>gi|291563253|emb|CBL42069.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [butyrate-producing
           bacterium SS3/4]
          Length = 476

 Score =  425 bits (1094), Expect = e-117,   Method: Composition-based stats.
 Identities = 164/464 (35%), Positives = 256/464 (55%), Gaps = 16/464 (3%)

Query: 9   GVAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLN 68
            V  +V     +   P   F+ ++GCQMN  DS ++  +    GYE     +++D ++ N
Sbjct: 24  QVKKLVEAESAKKGRPLTCFINTFGCQMNARDSEKLLGILKEAGYEEGTD-ENSDFVLYN 82

Query: 69  TCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNV 126
           TC +RE A  KVY  LG +  +K        D+++ + GC+ Q      +I +    V++
Sbjct: 83  TCTVRENANLKVYGRLGYLSGVKRK----NPDMMIALCGCMMQEPEVVAKIKKSYRHVDL 138

Query: 127 VVGPQTYYRLPELL-ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEG 185
           + G    ++L ELL ER    K VVD      +  E L I      RK    + + I  G
Sbjct: 139 IFGTHNIFKLAELLYERFMEKKMVVDVWEGTNEIVEELPI-----ERKYPFKSGVNIMFG 193

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C+ FC++C+VPY RG E SR    ++ E   L+ +GV E+ LLGQNVN+  GK L+ +  
Sbjct: 194 CNNFCSYCIVPYVRGRERSREPEDIIKEIEGLVADGVVEVMLLGQNVNS-YGKNLE-QPI 251

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
           TF++LL  + +I+GL R+R+ TSHP+D+SD LI+   +   +  +LHLP+QSGS  ILK 
Sbjct: 252 TFAELLRRVEKIEGLERIRFMTSHPKDLSDELIETMKNSKKICSHLHLPLQSGSSEILKR 311

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           MNR+++  +Y  +++++R+  PDI++++D IVGFPGET++DF  TMD+V K+ Y  AF+F
Sbjct: 312 MNRKYSKEQYLALVEKLRAAMPDISLTTDIIVGFPGETEEDFEETMDVVRKVRYDSAFTF 371

Query: 366 KYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KE 424
            YS R GTP + M  Q+ E+V  +R   L K++++          G + +VL+E+    E
Sbjct: 372 IYSKRTGTPAAAMPNQIPEDVVKDRFDRLLKEVQDIASEVVKRHEGTVQKVLVEEIDTHE 431

Query: 425 KGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
              + GR      V        IG I+ V + + K     G LV
Sbjct: 432 DSFVTGRLSNNTVVHFAGDASLIGKIVDVSLDEAKGFYYMGSLV 475


>gi|310779250|ref|YP_003967583.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Ilyobacter polytropus DSM
           2926]
 gi|309748573|gb|ADO83235.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Ilyobacter polytropus DSM
           2926]
          Length = 437

 Score =  425 bits (1094), Expect = e-117,   Method: Composition-based stats.
 Identities = 148/447 (33%), Positives = 249/447 (55%), Gaps = 12/447 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + ++  + +YGCQMNV +S +++ +    GY+    + ++D + LNTC +RE AA ++Y 
Sbjct: 1   MKKKAAIITYGCQMNVNESAKIKRILQDMGYDITEDVSESDAVFLNTCTVREGAATQIYG 60

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            LG ++++K         +++ V GC AQ +GEE+ ++   +++V+G Q   ++P+ +E+
Sbjct: 61  KLGELKHIKEK-----RGMIIGVTGCFAQEQGEELAKKVKAIDIVMGNQNIGKIPQAIEK 115

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
              G    D  Y +    E         +     T++ TI  GC+ FCT+C+VPY RG E
Sbjct: 116 IESG----DFKYVIYVGDEDELPPRLDADFDSKKTSYSTITYGCNNFCTYCIVPYVRGRE 171

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            S  + Q++DE +  ++ G  EI LLGQNVN+  GK  +  K  F+ LL  + +I+G   
Sbjct: 172 RSVPMDQLLDEIKGFVEKGSKEIILLGQNVNS-YGKDFE-NKDNFAKLLEEICKIEGEFI 229

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+ + HPRD +D LI+     D +   +HLP+Q+GS R+L  MNR +   EY  + ++I
Sbjct: 230 VRFMSPHPRDFTDELIEVIAKNDKIARSMHLPIQAGSSRVLGLMNRGYKKEEYIALAEKI 289

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           +   P  +I++D IVGFPGET++DF  T+D+  ++ +  A+ F YSPR GT  + M  Q+
Sbjct: 290 KRSIPGSSITTDVIVGFPGETEEDFLDTIDVAKRVKFENAYMFMYSPRKGTKAAEMDGQI 349

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441
           D+  K ERL  L +         + + +G I  VL E   ++    +  R+   + V+  
Sbjct: 350 DQKTKKERLHRLIEVQNAISKEQSVSYIGSIQRVLAEGPSRKNPDVMCARTSTNKVVLFK 409

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                 G+ I ++ITD    TLYG++V
Sbjct: 410 GDPELEGEFINLKITDANTWTLYGDIV 436


>gi|291536277|emb|CBL09389.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Roseburia intestinalis
           M50/1]
          Length = 496

 Score =  425 bits (1094), Expect = e-117,   Method: Composition-based stats.
 Identities = 167/466 (35%), Positives = 253/466 (54%), Gaps = 26/466 (5%)

Query: 15  SQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIRE 74
            Q+ ++   P  F V ++GCQMN  DS ++  +    G+      ++AD ++ NTC +RE
Sbjct: 41  RQLSEEKGNPLTFHVSTFGCQMNARDSEKLVGILEKIGFVE-EDSEEADFVIYNTCTVRE 99

Query: 75  KAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQ--AEGEEILRRSPIVNVVVGPQT 132
            A  KVY  LG +    N   K+   +++ + GC+ Q     E+I +    VN++ G   
Sbjct: 100 NANNKVYGRLGYL----NGFQKKNPFMMIGLCGCMMQEPTVVEKIKQSYRFVNLIFGTHN 155

Query: 133 YYRLPELLERARFGK-----------RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLT 181
            Y+  EL+  A                 +D     +   E L +      RK    + + 
Sbjct: 156 IYKFAELIVTALENSFPEHSSGHGTSMTIDIWKDTDKIVEDLPV-----ERKYSFKSGVN 210

Query: 182 IQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD 241
           I  GC+ FC++C+VPY RG E SR   +++ E  +L  +GV EI LLGQNVN+  GK L+
Sbjct: 211 IMFGCNNFCSYCIVPYVRGRERSREPKEIIREIERLAADGVVEIMLLGQNVNS-YGKNLE 269

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
            +  TF+ LL  + ++ G+ R+R+ TSHP+D+SD LI+   +   +  +LHLP+QSGS R
Sbjct: 270 -QPMTFAQLLQEIEKVDGIERIRFMTSHPKDLSDDLIEVMKNSKKICKHLHLPLQSGSSR 328

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
           ILK MNRR+    Y +++D+IR+  PDIA+++D IVGFPGET++DF  TMD+V K+ Y  
Sbjct: 329 ILKLMNRRYDKEHYLELVDKIRAAVPDIALTTDIIVGFPGETEEDFEETMDVVRKVRYDS 388

Query: 362 AFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKH 421
           AF+F YS R GTP + M  Q+ E+V   R   L K+++        A  GQ + VLIE+ 
Sbjct: 389 AFTFIYSKRTGTPAAVMENQIPEDVIKARFDRLLKEVQTISAEKAGALTGQTLPVLIEEK 448

Query: 422 GKEKGKLV-GRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGE 466
            ++   LV GR      V L      IG I+ V++ + K     GE
Sbjct: 449 NEQDASLVTGRLSNNSVVHLPGTEDMIGKIVDVKLLECKGFYYMGE 494


>gi|298346683|ref|YP_003719370.1| putative tRNA 2-methylthioadenine synthetase [Mobiluncus curtisii
           ATCC 43063]
 gi|298236744|gb|ADI67876.1| possible tRNA 2-methylthioadenine synthetase [Mobiluncus curtisii
           ATCC 43063]
          Length = 498

 Score =  425 bits (1094), Expect = e-117,   Method: Composition-based stats.
 Identities = 160/463 (34%), Positives = 257/463 (55%), Gaps = 30/463 (6%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDD------------ADLIVLNTC 70
            P+ + VK+ GCQMN +DS RM  +  + G+  V  +              ADL+VLNTC
Sbjct: 3   TPRTYLVKTLGCQMNEHDSERMAGLLDAAGWVPVAEVPQKAARATNAGDGGADLVVLNTC 62

Query: 71  HIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGP 130
            +RE A  K+Y  LG++ ++K    +    +++ V GC AQ EG +I+ R+P V+ V G 
Sbjct: 63  SVREAAGTKLYGHLGQLADVK----RNRPGMMIAVGGCFAQQEGSKIIDRAPWVDAVFGT 118

Query: 131 QTYYRLPELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKF 189
                LP LL+RA   +   V+ + S++     L       +R+   +A+++I  GC+  
Sbjct: 119 HNIDALPVLLKRAEHNQEAAVEIEESLKVFPSVLP-----AHRQSPASAWVSISVGCNNT 173

Query: 190 CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSD 249
           CTFC+VP  RG E  R+ + +V E + ++D G  E+TLLGQNVN++      G +  F+D
Sbjct: 174 CTFCIVPSLRGRERDRNPADIVAEVKAVVDAGALEVTLLGQNVNSYGMSF--GRRGAFAD 231

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
           LL  + +  GL RLR+T+ HP   ++ +I A  +   +MP LH P+QSGSDRIL+ M R 
Sbjct: 232 LLREVGKTPGLERLRFTSPHPAAFTEEVIAAMAETPTVMPSLHFPLQSGSDRILRQMRRS 291

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369
           + +  + +I+  +RS  P+ AI++D IVGFPGET+ DF+ T+D++ +  +  AF+F YS 
Sbjct: 292 YRSERFLRILREVRSAIPEAAITTDVIVGFPGETEVDFQDTLDVLSEARFQAAFTFIYSR 351

Query: 370 RLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK---G 426
           R GTP ++  +QVD  + A+R   L +   +  +  N+   G+I+EVL+   G++     
Sbjct: 352 RPGTPAADRDDQVDPEIVAQRYQRLLELQEKITLEENEKQEGRIVEVLVTAGGRKDEATA 411

Query: 427 KLVGRSPWLQSVVL---NSKNHNIGDIIKVRITDVKISTLYGE 466
           ++ GR+   + V            GD + VR+T      L  +
Sbjct: 412 RMSGRAQDNRLVHFAVPQGIKVRPGDFVTVRVTHGAPHHLVAD 454


>gi|68536191|ref|YP_250896.1| hypothetical protein jk1114 [Corynebacterium jeikeium K411]
 gi|123775708|sp|Q4JV79|MIAB_CORJK RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|68263790|emb|CAI37278.1| miaB [Corynebacterium jeikeium K411]
          Length = 512

 Score =  425 bits (1093), Expect = e-117,   Method: Composition-based stats.
 Identities = 152/469 (32%), Positives = 255/469 (54%), Gaps = 24/469 (5%)

Query: 10  VAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNT 69
              + +Q        + + V+++GCQMNV+DS R+  +    GY   +     D++V NT
Sbjct: 2   TQTIQTQTGKNSGAGRTYEVRTFGCQMNVHDSERLSGLLEDSGYVPASEGVTPDVVVFNT 61

Query: 70  CHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG 129
           C +RE A +++Y  LG+++ +K+        + + V GC+AQ + + ++ ++P V+VV G
Sbjct: 62  CAVRENADKRLYGTLGQMKAIKDEH----PGMQIAVGGCMAQKDKQTVVDKAPWVDVVFG 117

Query: 130 PQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKF 189
                 LP LLER+    +     +   ++F  +        R+     ++++  GC+  
Sbjct: 118 THNLGSLPTLLERSAHNHKAEVEIFDALEEFPSVLPA----KRESAYAGWVSVSVGCNNT 173

Query: 190 CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD----GEKC 245
           CTFC+VP  RG E  R   +++ E + L++ GV E+TLLGQNVNA+     D     ++ 
Sbjct: 174 CTFCIVPSLRGKEQDRRPGEILAEVKALVEQGVSEVTLLGQNVNAYGVNFADETLERDRT 233

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
            FS LL +  EI+GL RLR+T+ HP + +D +I A  +   + P LH+P+QSGSD++LK 
Sbjct: 234 AFSKLLRACGEIEGLERLRFTSPHPAEFTDDVIDAMAETPAVCPQLHMPLQSGSDKVLKD 293

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           M R + + ++  I+D++R   P  AI++D IVGFPGET++DF+AT+D+V+K  ++ AF+F
Sbjct: 294 MKRSYRSKKFLAILDKVRERIPHAAITTDIIVGFPGETEEDFQATLDVVEKARFSSAFTF 353

Query: 366 KYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK 425
           +YSPR GTP + M  QV + V  +R   L           N   +G   E+L++  G++ 
Sbjct: 354 QYSPRPGTPAAEMENQVPKAVVQDRYERLLALQERISEEENRKLIGTTQELLVQADGRKN 413

Query: 426 GKLVGRSP-------WLQSVVL-NSKNHNIGDIIKVRITDVKISTLYGE 466
                R+          + V      +   GD+++V ITD     L  +
Sbjct: 414 D----RTQRRSGRSRDGRLVHFTPEGDVRAGDVVEVVITDAAPHFLIAD 458


>gi|332858143|ref|XP_001155512.2| PREDICTED: CDK5 regulatory subunit-associated protein 1 [Pan
           troglodytes]
          Length = 587

 Score =  425 bits (1093), Expect = e-117,   Method: Composition-based stats.
 Identities = 152/479 (31%), Positives = 251/479 (52%), Gaps = 38/479 (7%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ ++++YGCQMNV D+     +    GY R +++ +AD+I+L TC +REKA + +++ L
Sbjct: 100 RKVYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCSVREKAEQTIWNRL 159

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            +++ LK  R +    L + + GC+A+   EEIL R  +V+++ GP  Y  LP LL  A 
Sbjct: 160 HQLKALKTRRPRSRVPLRIGILGCMAERLKEEILNREKMVDILAGPDAYRDLPRLLAVAE 219

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G++  +   S+++ +  +  V          +AF++I  GCD  C++C+VP+TRG E S
Sbjct: 220 SGQQAANVLLSLDETYADVMPVQTS---ASATSAFVSIMRGCDNMCSYCIVPFTRGRERS 276

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG---------------KGLDGEKCT--- 246
           R ++ +++E +KL + G+ E+TLLGQNVN++                 +G      T   
Sbjct: 277 RPIASILEEVKKLSEQGLKEVTLLGQNVNSFWDNSEVQFNNAVPTNLSRGFTTNYKTKQG 336

Query: 247 ---FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
              F+ LL  +S +   +R+R+T+ HP+D  D +++   + D +   +HLP QSGS R+L
Sbjct: 337 GLRFAHLLDQVSRVDPEMRIRFTSPHPKDFPDEVLQLIHERDNICKQIHLPAQSGSSRVL 396

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           ++M R ++   Y +++  IR   P +++SSDFI GF GET++D   T+ L+ ++ Y   F
Sbjct: 397 EAMRRGYSREAYVELVHHIRESIPGVSLSSDFIAGFCGETEEDHVQTVSLLREVQYNMGF 456

Query: 364 SFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422
            F YS R  T     + + V E VK  RL  L    RE+    N   VG    VL+E   
Sbjct: 457 LFAYSMRQKTRAYHRLKDDVPEEVKLRRLEELITIFREEATKANQTSVGCTQLVLVEGLS 516

Query: 423 KEKGK-LVGRSPWLQSVVLNSKN------------HNIGDIIKVRITDVKISTLYGELV 468
           K     L GR+     V+                    GD + V+IT     TL G ++
Sbjct: 517 KRSATDLCGRNDGNLKVIFPDAEMEDVNNPGLRVRAQPGDYVLVKITSASSQTLRGHVL 575


>gi|94501476|ref|ZP_01307995.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Oceanobacter sp. RED65]
 gi|94426441|gb|EAT11430.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Oceanobacter sp. RED65]
          Length = 425

 Score =  425 bits (1093), Expect = e-117,   Method: Composition-based stats.
 Identities = 181/422 (42%), Positives = 267/422 (63%), Gaps = 12/422 (2%)

Query: 44  MEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLL 102
           M D+   S   E  ++ ++AD+++LNTC IREKA EKV+  LGR   LK        DL+
Sbjct: 1   MADLLGESHAMEITDNPEEADVLLLNTCSIREKAQEKVFHQLGRWNKLKEK----NPDLV 56

Query: 103 VVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFER 162
           + V GCVA  EG+ I +R+P V++V GPQT +RLPE ++ ++    VVD  +   +KF+ 
Sbjct: 57  IGVGGCVASQEGDAIRKRAPQVDMVFGPQTLHRLPEFVDASKNSIPVVDITFPEIEKFDH 116

Query: 163 LSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGV 222
           L        +  G +AF++I EGC K+CTFCVVPYTRG E+SR  + V+ E  +L   GV
Sbjct: 117 LP-----APKVEGASAFVSIMEGCSKYCTFCVVPYTRGEEVSRPFADVMREVEQLAAQGV 171

Query: 223 CEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHG 282
            E+ LLGQNVNA++G+  DG+    ++L+ +++E++G+ R+R+TTSHP + SD LI+ + 
Sbjct: 172 REVNLLGQNVNAYQGQTDDGDIADLAELITAVAEVEGIDRIRFTTSHPVEFSDSLIQVYA 231

Query: 283 DLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGE 342
           ++  L+ +LHLPVQSGS+RIL +M R H    Y   I+RI+ +RPDI+ISSDFI+GFPGE
Sbjct: 232 EVPELVSHLHLPVQSGSNRILSAMKRGHEIDMYIDKINRIKKLRPDISISSDFIIGFPGE 291

Query: 343 TDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQ 402
           TD+DF  TM+L+ +IG+  +FSF YS R GTP S + ++  E+VK +RL  LQ ++ +  
Sbjct: 292 TDEDFEDTMNLIAEIGFDISFSFIYSARPGTPASELKDETPEDVKKQRLSILQNRITQNA 351

Query: 403 VSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLNSKNH-NIGDIIKVRITDVKI 460
                  VG    VL+     K+ G+L GR+   + V     +   IG  +K RI D   
Sbjct: 352 QQIARRMVGNTETVLVTGVSKKDPGQLQGRTENNRVVNFRCDDQTLIGKFVKTRIEDAYS 411

Query: 461 ST 462
           ++
Sbjct: 412 NS 413


>gi|320107085|ref|YP_004182675.1| MiaB family RNA modification protein [Terriglobus saanensis SP1PR4]
 gi|319925606|gb|ADV82681.1| RNA modification enzyme, MiaB family [Terriglobus saanensis SP1PR4]
          Length = 452

 Score =  425 bits (1093), Expect = e-117,   Method: Composition-based stats.
 Identities = 171/447 (38%), Positives = 266/447 (59%), Gaps = 15/447 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + F+++++GCQMN +DS ++      +GY RV   + A LI+ NTC IR+KA +KV+  L
Sbjct: 16  KTFYIETFGCQMNAHDSEKVIGTLEHEGYTRVEDEEAAGLILYNTCSIRDKAEQKVFHRL 75

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
              + ++    K        V GCVAQ EGE+I  ++P V++V G  +Y  LPE+L R  
Sbjct: 76  NEYKKMQGEGKKF------AVIGCVAQQEGEKIFEKAPYVSLVSGSASYRNLPEMLVRLE 129

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G+  +     ++D+    +       R      ++TI EGCDKFC++CVVPYTRG E S
Sbjct: 130 AGENRIT---GLDDRQTDETFDTEFTARSNPHRGYITIIEGCDKFCSYCVVPYTRGKERS 186

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R+   V+ EAR++ D G  +I LLGQNVN++R       K TF+++L ++ ++ G+ R+R
Sbjct: 187 RTSDSVLAEARRMADMGYTDIQLLGQNVNSYRDSS---GKRTFAEVLGAIGQMAGVRRVR 243

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +TTSHPRD +  +I     +  +  ++HLPVQSGS  +LK+M R +T   Y + I  I++
Sbjct: 244 FTTSHPRDFTQDIIDVIDAVPQVCDHVHLPVQSGSSIVLKAMQREYTREWYLERIAWIKA 303

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
            + +I++++D IVGFPGET++DF  T  L+D++GY   F+F+YSPR  TP  +M E V  
Sbjct: 304 AKREISMTTDIIVGFPGETEEDFEQTASLLDEVGYDGVFAFQYSPRPNTPAIHMEETVGV 363

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
            VKA RL  L  + RE Q       +GQ++EV++E + +++G++ GRS   ++V      
Sbjct: 364 EVKAARLQRLMDRQRELQRISYGRHLGQVMEVMVEGYNRQRGQVTGRSSQNKTVNFTVTQ 423

Query: 445 ---HNIGDIIKVRITDVKISTLYGELV 468
                +G    VRIT    ++L GE V
Sbjct: 424 PILPALGSYQTVRITQTFPNSLVGEAV 450


>gi|291528925|emb|CBK94511.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Eubacterium rectale
           M104/1]
          Length = 479

 Score =  425 bits (1093), Expect = e-117,   Method: Composition-based stats.
 Identities = 168/458 (36%), Positives = 254/458 (55%), Gaps = 16/458 (3%)

Query: 14  VSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIR 73
           V +   +   P  +FVK++GCQMN  DS ++  +    GY   N  + +D IV NTC +R
Sbjct: 30  VEKKSKEIGRPMTYFVKTFGCQMNARDSEKLVGILEQIGYVEGND-EHSDFIVYNTCTVR 88

Query: 74  EKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQ 131
           E A  KVY  LG ++N K    K+   + + + GC+ Q     E I +    V++V G  
Sbjct: 89  ENANNKVYGRLGYLQNYK----KKNPLMKIALCGCMMQEPEVVENIKKHYKFVDIVFGTH 144

Query: 132 TYYRLPELL-ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190
             ++  E+L      G +V+D         E L +      RK    + + I  GC+ FC
Sbjct: 145 NIFKFAEILCNNIESGSQVIDIWKDTNQIVEDLPV-----KRKFSFKSGVNIMFGCNNFC 199

Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDL 250
           ++C+VPY RG E SR    ++ E  KL+ +GVCEI LLGQNVN+  GK LD    TF++L
Sbjct: 200 SYCIVPYVRGRERSREPKDIIREIEKLVADGVCEIMLLGQNVNS-YGKTLD-NPITFAEL 257

Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
           L  +++I+GL R+R+ TSHP+D+SD LI A  + D +  ++HLP+QSGS R+LK MNR +
Sbjct: 258 LREVNKIEGLKRIRFMTSHPKDLSDDLIMAIKECDKVCKHMHLPLQSGSSRVLKEMNRHY 317

Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370
              +Y   + R+R   PDIAI++D IVGFPGET++DF  TMD+V ++ Y  AF+F YS R
Sbjct: 318 DKEKYLDEVKRLREQIPDIAITTDIIVGFPGETEEDFLETMDVVKQVRYDSAFTFIYSKR 377

Query: 371 LGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLV 429
            GT  + M  QV ++V  +R   L K+++           G+++ VL E+   ++ G + 
Sbjct: 378 TGTRAATMENQVPDDVVKDRFDRLLKEVQTISSEKAKCYEGKVVPVLAEEMDDQKDGYVT 437

Query: 430 GRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
           GR      V        IG+I  V++ + +     GE+
Sbjct: 438 GRMDNNSIVHFPGTEDMIGNIYNVKLDECRGFYYMGEI 475


>gi|225027640|ref|ZP_03716832.1| hypothetical protein EUBHAL_01899 [Eubacterium hallii DSM 3353]
 gi|224954954|gb|EEG36163.1| hypothetical protein EUBHAL_01899 [Eubacterium hallii DSM 3353]
          Length = 483

 Score =  425 bits (1093), Expect = e-117,   Method: Composition-based stats.
 Identities = 169/445 (37%), Positives = 253/445 (56%), Gaps = 14/445 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
            F+ +++GCQMN  DS ++  +    GY + ++ + AD +  NTC +RE A  +VY  LG
Sbjct: 46  TFYDQTFGCQMNFKDSEKLNGILEDIGYVKADT-EKADFVYYNTCTVRENANVRVYGRLG 104

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAE--GEEILRRSPIVNVVVGPQTYYRLPELLERA 143
            ++N K    K+  ++++ + GC+ Q     E++      V+VV G    ++L ELL   
Sbjct: 105 ALKNYK----KKNPEMVIAMCGCMMQEPEEQEKVKTTFKFVDVVFGTHNIFKLAELLYEC 160

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             G++ V   +   D+     I D   +RK G  A + I  GC+ FC++C+VPY RG E 
Sbjct: 161 LSGRKRVFDVWEKTDQI----IEDLPSDRKFGFKAGVNIMFGCNNFCSYCIVPYVRGRER 216

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR    +V E +KL   GV E+ LLGQNVN+  GK L+    +F+ LL  + E++G+ R+
Sbjct: 217 SRKPEDIVAEVKKLASEGVVEVMLLGQNVNS-YGKNLE-NPISFAKLLTMVEEVEGIERI 274

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+ TSHP+D+SD LI+       +  +LHLPVQSGS RILK MNR++T   Y +++D+IR
Sbjct: 275 RFMTSHPKDLSDELIEVMAHSKKICKHLHLPVQSGSSRILKLMNRKYTKEHYLELVDKIR 334

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           +  PDIAI++D IVGFPGET++DF+ T+D+V K  Y  AF+F YS R GTP + M +QV 
Sbjct: 335 TAVPDIAITTDIIVGFPGETEEDFQETLDVVRKAKYDSAFTFIYSKRSGTPAAKMPDQVP 394

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GRSPWLQSVVLNS 442
           ++V  ER   L K + E     N    G    VL+E+  ++   +V GR      V    
Sbjct: 395 DDVVHERFDRLLKVVNEAAKEQNGKLTGNTELVLVEEIDEKDDTMVTGRLSNNSVVHFKG 454

Query: 443 KNHNIGDIIKVRITDVKISTLYGEL 467
               IG I+ V + + K     G L
Sbjct: 455 DASLIGKIVPVVLEESKGFYYLGRL 479


>gi|146284073|ref|YP_001174226.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Pseudomonas stutzeri
           A1501]
 gi|145572278|gb|ABP81384.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Pseudomonas stutzeri
           A1501]
          Length = 406

 Score =  425 bits (1093), Expect = e-117,   Method: Composition-based stats.
 Identities = 193/418 (46%), Positives = 266/418 (63%), Gaps = 17/418 (4%)

Query: 54  ERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAE 113
           E   +  +AD+I+LNTC IREKA EKV+S LGR R LK     +   L++ V GCVA  E
Sbjct: 2   EITENPAEADVILLNTCSIREKAQEKVFSQLGRWRELKQ----DNPQLVIGVGGCVASQE 57

Query: 114 GEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNR 172
           G  I  R+P V+VV GPQT +RLPE+++ AR  +   VD  +   +KF+RL        R
Sbjct: 58  GAAIRDRAPYVDVVFGPQTLHRLPEMIDAARTTRTPQVDISFPEIEKFDRLP-----EPR 112

Query: 173 KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNV 232
             G +A++++ EGC K+CTFCVVPYTRG E+SR L+ V+ E   L +NGV E+TLLGQNV
Sbjct: 113 VDGPSAYVSVMEGCSKYCTFCVVPYTRGEEVSRPLADVLAEIVHLAENGVKEVTLLGQNV 172

Query: 233 NAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLH 292
           N +R  G D     F+DLL++++ I G+ R+RYTTSHP + SD +I+AH D+  L+ YLH
Sbjct: 173 NGYRHDGHD-----FADLLHAVAAIDGIGRIRYTTSHPLEFSDAIIQAHADIPQLVKYLH 227

Query: 293 LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352
           LPVQ+GSDRIL +M R HTA EY+  I R+++  PDI ISSDFIVGFPGETD DF  TM 
Sbjct: 228 LPVQAGSDRILAAMKRNHTALEYKSRIRRLKAAVPDILISSDFIVGFPGETDKDFEQTMK 287

Query: 353 LVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQ 412
           L++ +G+  ++SF YS R GTP +++ +   E VK +RL  LQ+++ +Q    +   VG 
Sbjct: 288 LIEDVGFDFSYSFVYSARPGTPAADLADDTPEEVKKQRLAILQQRINQQGFENSRRMVGT 347

Query: 413 IIEVLIEKHG-KEKGKLVGRSPWLQSVVLNSKNH-NIGDIIKVRITDVKISTLYGELV 468
              +L+  +  K+ G L GR+   + V     N   IG  + V I D    +L G L+
Sbjct: 348 TQRILVSDYSKKDPGMLQGRTEHNRIVNFRCDNPRLIGQFVDVHIDDALPHSLRGSLL 405


>gi|300744000|ref|ZP_07073020.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Rothia dentocariosa M567]
 gi|300380361|gb|EFJ76924.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Rothia dentocariosa M567]
          Length = 505

 Score =  425 bits (1092), Expect = e-117,   Method: Composition-based stats.
 Identities = 150/458 (32%), Positives = 253/458 (55%), Gaps = 18/458 (3%)

Query: 15  SQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIRE 74
           ++       P+ + V+++GCQMNV+DS RM  +  + GY R    ++ DL+V NTC +RE
Sbjct: 8   AESATSAETPRTYEVRTFGCQMNVHDSERMSGLLEANGYVRAAEGEEPDLVVFNTCAVRE 67

Query: 75  KAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYY 134
            A+ ++Y  LG++ ++K    +    + + V GC+AQ +   I+ ++P V+VV G     
Sbjct: 68  NASNRLYGHLGQLASVK----RRHEGMQIAVGGCLAQKDQNTIIEKAPWVDVVFGTHNIG 123

Query: 135 RLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCV 194
            LP LLERAR             + F           R    + +++I  GC+  CTFC+
Sbjct: 124 SLPTLLERARHNHEAQAELLESLEVFPSTLPT----KRDHVYSGWVSISVGCNNTCTFCI 179

Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL 254
           VP  RG E  R    ++ E + L+D+G  E+TLLGQNVN++  +   G++  FS LL + 
Sbjct: 180 VPSLRGKEKDRRPGDILAEVQALVDDGAIEVTLLGQNVNSYGVEF--GDRQAFSKLLRAC 237

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
            +I+GL R+R+T+ HP   +D +I+A  +   +MP LH+P+QSGSD++LK M R + + +
Sbjct: 238 GDIEGLERVRFTSPHPAMFTDDVIEAMAETPNVMPVLHMPLQSGSDKVLKDMRRSYRSKK 297

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
           +  I++++R   P   I++D IVGFPGE+++DF+ T+ +V++  ++ AF+F+YS R GTP
Sbjct: 298 FLGILEKVRERIPHAVITTDIIVGFPGESEEDFQDTLRVVEQARFSSAFTFQYSIRPGTP 357

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG----KLVG 430
            + M  Q+ +++  ER   L           N   +G+ +E+++      K     +L G
Sbjct: 358 AATMENQIPKDIVQERYERLVALQDRIAGEENRKQLGKTVELMVVAESGRKAQQTHRLAG 417

Query: 431 RSPWLQSVVLN----SKNHNIGDIIKVRITDVKISTLY 464
           R P  + V  +     +    GD++ V IT+     L 
Sbjct: 418 RGPDQRLVHFSVPAGCEEPRPGDMVTVPITEAGSFHLI 455


>gi|301765780|ref|XP_002918310.1| PREDICTED: CDK5 regulatory subunit-associated protein 1-like
           [Ailuropoda melanoleuca]
          Length = 583

 Score =  425 bits (1092), Expect = e-117,   Method: Composition-based stats.
 Identities = 158/479 (32%), Positives = 253/479 (52%), Gaps = 38/479 (7%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ ++++YGCQMNV D+     +    GY R  ++ +AD+I+L TC IREKA + +++ L
Sbjct: 96  RKVYLETYGCQMNVNDTEIAWSILQKSGYLRTRNLQEADVILLVTCSIREKAEQTIWNRL 155

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            +++ LK  R++    L + + GC+A+   EEIL R  +V+++ GP  Y  LP LL  A 
Sbjct: 156 HQLKALKTKRLRSRVPLRIGILGCMAERLKEEILNREKMVDILAGPDAYRDLPRLLAVAE 215

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G++  +   S+++ +  +  V          +AF++I  GCD  C++C+VP+TRG E S
Sbjct: 216 SGQQAANVLLSLDETYADVMPVQTS---PSATSAFVSIMRGCDNMCSYCIVPFTRGRERS 272

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAW-----------------RGKGLDGEKC-- 245
           R +  +++E RKL + G+ E+TLLGQNVN++                 RG   + +    
Sbjct: 273 RPVDSILEEVRKLSEQGLKEVTLLGQNVNSFRDSSEVQFNNAVSTNLSRGFSTNYKPKQG 332

Query: 246 --TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
              F+ LL  +S I   +R+R+T+ HP+D  D +++   + D +   +HLP QSGS R+L
Sbjct: 333 GLRFAHLLDKVSRIDPEMRIRFTSPHPKDFPDEVLQLIQERDNICKQIHLPAQSGSSRVL 392

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           ++M R ++   Y ++I  IR   P +++SSDFI GF GET++D   T+ L+ ++ Y   F
Sbjct: 393 EAMRRGYSREAYVELIHHIRESIPGVSLSSDFIAGFCGETEEDHLQTVSLLREVQYNMGF 452

Query: 364 SFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422
            F YS R  T     + + V E VK  RL  L    RE+    N A VG    VL+E H 
Sbjct: 453 LFAYSMRQKTRAYHRLKDDVPEEVKLRRLEELITVFREEATKANMASVGCTQLVLVEGHS 512

Query: 423 KEKGK-LVGRSPWLQSVVLNSKN------------HNIGDIIKVRITDVKISTLYGELV 468
           K     L GR+     V+                    GD + V+IT     TL G ++
Sbjct: 513 KRSATDLCGRNDGNLKVIFPDVEMEDVNNSKVKVRAQPGDYVLVKITSTSSQTLKGHVL 571


>gi|213161683|ref|ZP_03347393.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Salmonella enterica
           subsp. enterica serovar Typhi str. E00-7866]
          Length = 383

 Score =  425 bits (1092), Expect = e-117,   Method: Composition-based stats.
 Identities = 183/392 (46%), Positives = 263/392 (67%), Gaps = 11/392 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++  +K++GCQMN YDS +M D+  +  GY+  +  ++AD+++LNTC IREKA EKV+
Sbjct: 1   MTKKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTDVAEEADVLLLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR R LK        DL++ V GCVA  EGE I +R+  V+++ GPQT +RLPE++ 
Sbjct: 61  HQLGRWRLLKEK----NPDLIIGVGGCVASQEGEHIRQRAHYVDIIFGPQTLHRLPEMIN 116

Query: 142 RARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
             R  +  VVD  +   +KF+RL        R  G TAF++I EGC+K+CT+CVVPYTRG
Sbjct: 117 SVRGDRSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTYCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR    ++ E  +L   GV E+ LLGQNVNAWRG+  DG   TF+DLL  ++ I G+
Sbjct: 172 EEVSRPSDDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTTGTFADLLRLVAAIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+TTSHP + +D +I+ + D   L+ +LHLPVQSGSDR+L  M R HTA EY+ II 
Sbjct: 232 DRIRFTTSHPIEFTDDIIEVYRDTPELVSFLHLPVQSGSDRVLNLMGRTHTALEYKAIIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R+ RPDI ISSDFIVGFPGET DDF  TM L+  + +  ++SF +S R GTP ++M++
Sbjct: 292 KLRAARPDIQISSDFIVGFPGETTDDFEKTMKLIADVNFDMSYSFIFSARPGTPAADMVD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQ 412
            V E  K +RL  LQ+++ +Q ++++   +G 
Sbjct: 352 DVPEEEKKQRLYILQERINQQAMAWSRRMLGT 383


>gi|160880731|ref|YP_001559699.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Clostridium
           phytofermentans ISDg]
 gi|160429397|gb|ABX42960.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Clostridium
           phytofermentans ISDg]
          Length = 487

 Score =  425 bits (1092), Expect = e-117,   Method: Composition-based stats.
 Identities = 163/457 (35%), Positives = 263/457 (57%), Gaps = 14/457 (3%)

Query: 14  VSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIR 73
           V ++ D+   P  F V+++GCQMN  DS ++  +  + GY   +S ++AD +V NTC +R
Sbjct: 39  VKKVADELGRPLTFNVQTFGCQMNAKDSEKLAGILETIGYVESDS-EEADFVVYNTCTVR 97

Query: 74  EKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQ 131
           E A  +VY  +G + NLK    K+   + + + GC+ Q     E+I +    V++V G  
Sbjct: 98  ENANTRVYGRIGFLGNLK----KKNPHMRIALCGCMMQESHVVEKIKKSYRFVDIVFGTH 153

Query: 132 TYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCT 191
             ++L EL+      K++V   +   DK       +  Y  K    A + I  GC+ FC+
Sbjct: 154 NIFKLAELIYARHTTKKMVIDIWKETDKIVEELPSEQKYKFK----AGVNIMYGCNNFCS 209

Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLL 251
           +C+VPY RG E SR+   ++ E ++L+  GV E+ LLGQNVN+  GK LD E  +F+ LL
Sbjct: 210 YCIVPYVRGRERSRNPEDIIKEIKQLVSKGVVEVMLLGQNVNS-YGKTLD-EPVSFAQLL 267

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
             + +++GL R+R+ T HP+D+S+ +I+   +   +  ++HLPVQSGS  +L  MNR++T
Sbjct: 268 QMVEQVEGLKRIRFMTPHPKDLSNDVIEVMKNSKKICNHIHLPVQSGSTELLMKMNRKYT 327

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
             +Y  ++DRI+   P+I++++D IVGFPGET++DF  T+D+V K+GY  A++F YS R 
Sbjct: 328 KEDYLNLVDRIKMAMPNISLTTDIIVGFPGETEEDFLDTLDVVRKVGYDSAYTFIYSKRS 387

Query: 372 GTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-G 430
           GTP + M  Q+ E V  ER   L   +RE     +    G+I EVL+E+  ++   L+ G
Sbjct: 388 GTPAATMENQIPEEVANERFQRLLTTIRESSSKISKDDEGKIAEVLVEEVNEQDNSLMTG 447

Query: 431 RSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
           R      V        IG+I+ V++++ K     GE+
Sbjct: 448 RLSNNVLVHFKGTKELIGNIVSVKLSECKGFYYMGEM 484


>gi|323691989|ref|ZP_08106237.1| hypothetical protein HMPREF9475_01100 [Clostridium symbiosum
           WAL-14673]
 gi|323503912|gb|EGB19726.1| hypothetical protein HMPREF9475_01100 [Clostridium symbiosum
           WAL-14673]
          Length = 500

 Score =  425 bits (1092), Expect = e-116,   Method: Composition-based stats.
 Identities = 163/456 (35%), Positives = 259/456 (56%), Gaps = 14/456 (3%)

Query: 14  VSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIR 73
           V++  ++   P   F+ ++GCQMN +DS ++  +    G+    S +++D ++ NTC +R
Sbjct: 44  VTEKSEELGRPMTCFISTFGCQMNAHDSEKLMGILLEAGFTEGQS-EESDFVLYNTCTVR 102

Query: 74  EKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQ 131
           E A ++VY  LG + +LK    K+   +++ + GC+ Q     E++ +    V+++ G  
Sbjct: 103 ENANQRVYGRLGYLNSLK----KKNPHMIISLCGCMMQEPEVVEKLKKSYRFVDIIFGTH 158

Query: 132 TYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCT 191
             Y+L ELL     G+++V   +    K     + D    RK    + + I  GC+ FC+
Sbjct: 159 NIYKLAELLSERIDGRKMVIDIWKDTAKI----VEDLPSERKYPFKSGVNIMFGCNNFCS 214

Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLL 251
           +C+VPY RG E SR+   ++ E   L+ +GV EI LLGQNVN+  GK L+ +  TF++LL
Sbjct: 215 YCIVPYVRGRERSRNPEDIIREIEALVASGVVEIMLLGQNVNS-YGKNLE-KPITFAELL 272

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
             + +I+GL R+R+ TSHP+D+SD LI+       +  +LHLP+QSGS RIL  MNR++T
Sbjct: 273 QQIEQIEGLERIRFMTSHPKDLSDELIEVMKHSRKICRHLHLPLQSGSSRILNLMNRKYT 332

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
             +Y  +  +I+   PDI++++D IVGFPGET++DF  TMD+V ++ Y  AF+F YS R 
Sbjct: 333 KEQYLTLAAKIKEAIPDISLTTDIIVGFPGETEEDFEETMDVVQRVRYDSAFTFIYSKRT 392

Query: 372 GTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKH-GKEKGKLVG 430
           GTP ++M +QV E+V  ER   L K+++          V  + EVL+E+    E+G L G
Sbjct: 393 GTPAASMEDQVPEDVVKERFDRLLKEVQAISAQVCGREVHTVQEVLVEEPDDHEEGFLTG 452

Query: 431 RSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGE 466
           R      V        IG I+KV +   K     G 
Sbjct: 453 RLSNNTIVHFPGSRELIGKIVKVYLEQSKGFYYMGR 488


>gi|323486941|ref|ZP_08092256.1| hypothetical protein HMPREF9474_04007 [Clostridium symbiosum
           WAL-14163]
 gi|323399713|gb|EGA92096.1| hypothetical protein HMPREF9474_04007 [Clostridium symbiosum
           WAL-14163]
          Length = 503

 Score =  425 bits (1092), Expect = e-116,   Method: Composition-based stats.
 Identities = 163/456 (35%), Positives = 259/456 (56%), Gaps = 14/456 (3%)

Query: 14  VSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIR 73
           V++  ++   P   F+ ++GCQMN +DS ++  +    G+    S +++D ++ NTC +R
Sbjct: 47  VTEKSEELGRPMTCFISTFGCQMNAHDSEKLMGILLEAGFTEGQS-EESDFVLYNTCTVR 105

Query: 74  EKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQ 131
           E A ++VY  LG + +LK    K+   +++ + GC+ Q     E++ +    V+++ G  
Sbjct: 106 ENANQRVYGRLGYLNSLK----KKNPHMIISLCGCMMQEPEVVEKLKKSYRFVDIIFGTH 161

Query: 132 TYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCT 191
             Y+L ELL     G+++V   +    K     + D    RK    + + I  GC+ FC+
Sbjct: 162 NIYKLAELLSERIDGRKMVIDIWKDTAKI----VEDLPSERKYPFKSGVNIMFGCNNFCS 217

Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLL 251
           +C+VPY RG E SR+   ++ E   L+ +GV EI LLGQNVN+  GK L+ +  TF++LL
Sbjct: 218 YCIVPYVRGRERSRNPEDIIREIEALVASGVVEIMLLGQNVNS-YGKNLE-KPITFAELL 275

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
             + +I+GL R+R+ TSHP+D+SD LI+       +  +LHLP+QSGS RIL  MNR++T
Sbjct: 276 QQIEQIEGLERIRFMTSHPKDLSDELIEVMKHSRKICRHLHLPLQSGSSRILNLMNRKYT 335

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
             +Y  +  +I+   PDI++++D IVGFPGET++DF  TMD+V ++ Y  AF+F YS R 
Sbjct: 336 KEQYLTLAAKIKEAIPDISLTTDIIVGFPGETEEDFEETMDVVQRVRYDSAFTFIYSKRT 395

Query: 372 GTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKH-GKEKGKLVG 430
           GTP ++M +QV E+V  ER   L K+++          V  + EVL+E+    E+G L G
Sbjct: 396 GTPAASMEDQVPEDVVKERFDRLLKEVQAISAQVCGREVHTVQEVLVEEPDDHEEGFLTG 455

Query: 431 RSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGE 466
           R      V        IG I+KV +   K     G 
Sbjct: 456 RLSNNTIVHFPGSRELIGKIVKVYLEQSKGFYYMGR 491


>gi|304438410|ref|ZP_07398350.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Selenomonas sp. oral
           taxon 149 str. 67H29BP]
 gi|304368493|gb|EFM22178.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Selenomonas sp. oral
           taxon 149 str. 67H29BP]
          Length = 437

 Score =  425 bits (1092), Expect = e-116,   Method: Composition-based stats.
 Identities = 168/445 (37%), Positives = 255/445 (57%), Gaps = 14/445 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R+ +  YGCQMNV D+ RME    + GY R     DAD+I++NTC +RE A +KVY  +G
Sbjct: 4   RYKILVYGCQMNVADAERMEGQLQAAGYVRTEKTADADVILINTCCVRETAEDKVYGKIG 63

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            I+ +K         L+  + GC+AQ EGE ++RR+P ++ V+G      L  ++     
Sbjct: 64  EIKKVKE----HHPQLIFGITGCMAQKEGENLMRRAPHIDFVLGTGKVQELGRIVAEIAA 119

Query: 146 GK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            +  VVD         E L I  GG      ++A++ I  GC+ +CT+C+VPY RG E S
Sbjct: 120 ERAPVVDVALDAHAVEEDLPIARGGT-----LSAWVPIMYGCNNYCTYCIVPYVRGRERS 174

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R+  +VV E R+   +G  E+TLLGQNVN++   G D  +  F+DLL  +  ++G+ R+R
Sbjct: 175 RTPEEVVAEVRRAAADGYREVTLLGQNVNSY---GKDHGQADFADLLRMVDAVEGIRRVR 231

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           + TSHP+D+SD LI    +   +  ++HLPVQ GS+RILK+MNR +T  +YR+   R+R 
Sbjct: 232 FMTSHPKDISDKLIDTIKNGTHICEHIHLPVQYGSNRILKAMNRVYTVEQYRERARRVRE 291

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             P  ++++D IVGFPGET++DF  T+D + ++ Y  A++F YS R GTP + M  QV +
Sbjct: 292 ALPGASLTTDLIVGFPGETEEDFAETLDFLREMRYDAAYTFLYSKRSGTPAAAMAAQVPD 351

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVLNSK 443
            VK  RL  L     E   + N+       EV++E   K +     GR+   + V+    
Sbjct: 352 EVKHARLERLMAVQNEISRAINEGLRSAQAEVMVEGASKNDPAVWSGRTRTNKIVLFPHG 411

Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468
              +GD ++V+IT  +   L GE+V
Sbjct: 412 AERVGDFVQVKITQPQTWVLKGEVV 436


>gi|325107255|ref|YP_004268323.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Planctomyces brasiliensis
           DSM 5305]
 gi|324967523|gb|ADY58301.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Planctomyces brasiliensis
           DSM 5305]
          Length = 497

 Score =  425 bits (1092), Expect = e-116,   Method: Composition-based stats.
 Identities = 166/478 (34%), Positives = 259/478 (54%), Gaps = 28/478 (5%)

Query: 15  SQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIRE 74
             I+ Q   P++ F+++ GCQMNV DS  +       GYE  ++M  AD I+ NTC +RE
Sbjct: 9   ETIMSQSEAPKKLFIETVGCQMNVLDSELVVAALRKDGYELTDNMKKADTILFNTCSVRE 68

Query: 75  KAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYY 134
            A +K+YS LGR++  K        DL++ V GC+AQ + ++I +++P V++VVG     
Sbjct: 69  HAEQKIYSQLGRLKYSKQ----TRPDLVIGVMGCMAQKDQKKIFQKAPQVDLVVGTGQLA 124

Query: 135 RLPELLERARFGK---------RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEG 185
            +P L+  AR  +         R   T   V   F+    +     R     AF+ I  G
Sbjct: 125 EIPRLVVEAREKRDRQLAVSLSRKGGTRQEVSSSFQSYDPLRDPEMRPSPYQAFVRITFG 184

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           CDKFCT+CVVP TRG E SR+ S+++ E + L D GV EITLLGQ VN+      +G++ 
Sbjct: 185 CDKFCTYCVVPMTRGPEQSRNPSEILKETKALADQGVQEITLLGQTVNS-YRLTENGKEY 243

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
             +DLL  L E++G+ R+++ T++P+DM++ L++A  D   +  YLH+P+Q G D  LK 
Sbjct: 244 RLADLLTMLHEVEGIKRIKFVTNYPKDMTNDLLQAVRDYKKVSHYLHVPLQHGCDEQLKL 303

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           M R +T  +YR ++ RIR   P  ++SSDFIVGF GET++  + +++ + +  +  +F F
Sbjct: 304 MKRGYTTEDYRDMMGRIREHLPHASVSSDFIVGFCGETEESHQKSLEAIREYRFKNSFIF 363

Query: 366 KYSPRLGTP-GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE 424
           KYS R GT   +N  + + + VK  R   +           N   +G+ +EVL+E   K 
Sbjct: 364 KYSERAGTKAAANFADDIPDEVKKRRNNEMLDLQNAISAEDNAEFIGREVEVLVEGPSKN 423

Query: 425 -------------KGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
                          +L+GR+   + VV N  +   G + +V I D   +TL G +V 
Sbjct: 424 AVKAEQNRPSNATPDQLMGRTRCDRIVVFNGNSRLTGSLTQVAIHDCTPTTLMGNIVT 481


>gi|225021202|ref|ZP_03710394.1| hypothetical protein CORMATOL_01214 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224945935|gb|EEG27144.1| hypothetical protein CORMATOL_01214 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 526

 Score =  424 bits (1091), Expect = e-116,   Method: Composition-based stats.
 Identities = 157/466 (33%), Positives = 254/466 (54%), Gaps = 21/466 (4%)

Query: 14  VSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIR 73
            +      +  + + V+++GCQMNV+DS R+  +    GY+ V + +  DLIV NTC +R
Sbjct: 13  PTATTPDSVAGRTYEVRTFGCQMNVHDSERLSGLLEDAGYQPVVAGNTPDLIVFNTCAVR 72

Query: 74  EKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTY 133
           E A  ++Y  LG +R++K         + + V GC+AQ + + +++++P V+VV G    
Sbjct: 73  ENADMRLYGTLGSLRSVKERH----PGMQIAVGGCLAQKDKDAVVKKAPWVDVVFGTHNI 128

Query: 134 YRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC 193
             LP LL+RA    +         ++F  +        R+     ++++  GC+  CTFC
Sbjct: 129 GSLPALLKRASHNHQAEVEIVDALEQFPSVLPA----KRESAYAGWVSVSVGCNNTCTFC 184

Query: 194 VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG----EKCTFSD 249
           +VP  RG EI R    ++ E + L+D GV E+TLLGQNVNA+     D     ++  FS 
Sbjct: 185 IVPSLRGKEIDRRPGDILAEVQALVDQGVVEVTLLGQNVNAYGVNFADPGLPRDRSAFSR 244

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
           LL +  EI GL R+R+T+ HP + +  +I A  +   + P LH+P+QSGSD++LK M R 
Sbjct: 245 LLRACGEITGLERVRFTSPHPAEFTSDVIDAMAETPTVCPQLHMPLQSGSDKVLKEMRRS 304

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369
           +   ++  I+D +R   P  AI++D IVGFPGET++DF+AT+D+V+K  +  AF+F+YSP
Sbjct: 305 YRTKKFLAILDEVRQKIPHAAITTDIIVGFPGETEEDFQATLDVVEKARFTSAFTFQYSP 364

Query: 370 RLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG--- 426
           R GTP +   +QV + V  ER   L        +  N   V   +E+L++  G +K    
Sbjct: 365 RPGTPAAEYEQQVPKEVVQERYERLIALQERVCLEENQKLVNTEVELLVQADGGKKNAKT 424

Query: 427 -KLVGRSPWLQSVVL-----NSKNHNIGDIIKVRITDVKISTLYGE 466
            ++ GR+   + V         ++   GDII   +T+ K   L  +
Sbjct: 425 HRMTGRARDGRLVHFHPVGSIDQSIRPGDIITTTVTEAKPHFLIAD 470


>gi|226324928|ref|ZP_03800446.1| hypothetical protein COPCOM_02720 [Coprococcus comes ATCC 27758]
 gi|225207376|gb|EEG89730.1| hypothetical protein COPCOM_02720 [Coprococcus comes ATCC 27758]
          Length = 503

 Score =  424 bits (1091), Expect = e-116,   Method: Composition-based stats.
 Identities = 158/457 (34%), Positives = 250/457 (54%), Gaps = 12/457 (2%)

Query: 14  VSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIR 73
           V ++ ++   P      ++GCQMN  DS ++  +    GY+     + AD ++ NTC +R
Sbjct: 54  VKEMSEKIGRPLTATTVTFGCQMNARDSEKLVGVLELIGYKEEPDEEKADFVIYNTCTVR 113

Query: 74  EKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQ--AEGEEILRRSPIVNVVVGPQ 131
           E A  +VY  LG++   K    K+   + + + GC+ Q     E+I +    V+++ G  
Sbjct: 114 ENANLRVYGRLGQLGAKKK---KKNPHMFIGLCGCMMQEPTVVEKIKKSYRFVDLIFGTH 170

Query: 132 TYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCT 191
             Y+  EL+      +R+V   +   DK     + D    RK    + + I  GC+ FC+
Sbjct: 171 NIYKFAELIVTRFESERMVIDIWKDTDKI----VEDLPSERKFSFKSGVNIMFGCNNFCS 226

Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLL 251
           +C+VPY RG E SR+   ++ E   L+ +GV E+ LLGQNVN+  GK L+ E  TF+ LL
Sbjct: 227 YCIVPYVRGRERSRNPKDIIREIEGLVADGVVEVMLLGQNVNS-YGKNLE-EPMTFAQLL 284

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
             + +I+GL R+R+ TSHP+D+SD LI        +  +LHLPVQSGS RIL+ MNR +T
Sbjct: 285 QEIEKIEGLERIRFMTSHPKDLSDELIDVMAHSKKICKHLHLPVQSGSSRILQKMNRHYT 344

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
              Y +++ +IR   PDI++++D IVGFPGET++DF+ T+D+V ++ Y  AF+F YS R 
Sbjct: 345 KEHYLEVVRKIREAVPDISLTTDIIVGFPGETEEDFQDTLDIVRQVRYDSAFTFIYSKRT 404

Query: 372 GTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVG 430
           GTP + M +QV ++V  +R   L K++++          G   +VL+E  +  +   + G
Sbjct: 405 GTPAAAMEDQVPDDVVKDRFDRLLKEVQQISAEVCSVHQGTTQDVLVESVNDHDPSLVTG 464

Query: 431 RSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
           R      V        IG I+ V + + K     GEL
Sbjct: 465 RMSNNLLVHFPGDESMIGKIVTVYLKEAKGFYYMGEL 501


>gi|305681499|ref|ZP_07404306.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Corynebacterium
           matruchotii ATCC 14266]
 gi|305659704|gb|EFM49204.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Corynebacterium
           matruchotii ATCC 14266]
          Length = 531

 Score =  424 bits (1091), Expect = e-116,   Method: Composition-based stats.
 Identities = 157/466 (33%), Positives = 254/466 (54%), Gaps = 21/466 (4%)

Query: 14  VSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIR 73
            +      +  + + V+++GCQMNV+DS R+  +    GY+ V + +  DLIV NTC +R
Sbjct: 18  PTATTPDSVAGRTYEVRTFGCQMNVHDSERLSGLLEDAGYQPVVAGNTPDLIVFNTCAVR 77

Query: 74  EKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTY 133
           E A  ++Y  LG +R++K         + + V GC+AQ + + +++++P V+VV G    
Sbjct: 78  ENADMRLYGTLGSLRSVKERH----PGMQIAVGGCLAQKDKDAVVKKAPWVDVVFGTHNI 133

Query: 134 YRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC 193
             LP LL+RA    +         ++F  +        R+     ++++  GC+  CTFC
Sbjct: 134 GSLPALLKRASHNHQAEVEIVDALEQFPSVLPA----KRESAYAGWVSVSVGCNNTCTFC 189

Query: 194 VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE----KCTFSD 249
           +VP  RG EI R    ++ E + L+D GV E+TLLGQNVNA+     D +    +  FS 
Sbjct: 190 IVPSLRGKEIDRRPGDILAEVQALVDQGVVEVTLLGQNVNAYGVNFADPDLPRDRSAFSR 249

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
           LL +  EI GL R+R+T+ HP + +  +I A  +   + P LH+P+QSGSD++LK M R 
Sbjct: 250 LLRACGEITGLERVRFTSPHPAEFTSDVIDAMAETPTVCPQLHMPLQSGSDKVLKEMRRS 309

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369
           +   ++  I+D +R   P  AI++D IVGFPGET++DF+AT+D+V+K  +  AF+F+YSP
Sbjct: 310 YRTKKFLAILDEVRQKIPHAAITTDIIVGFPGETEEDFQATLDVVEKARFTSAFTFQYSP 369

Query: 370 RLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG--- 426
           R GTP +   +QV + V  ER   L        +  N   V   +E+L++  G +K    
Sbjct: 370 RPGTPAAEYEQQVPKEVVQERYERLIALQERVCLEENQKLVNTEVELLVQADGGKKNAKT 429

Query: 427 -KLVGRSPWLQSVVL-----NSKNHNIGDIIKVRITDVKISTLYGE 466
            ++ GR+   + V         ++   GDII   +T+ K   L  +
Sbjct: 430 HRMTGRARDGRLVHFHPVGSIDQSIRPGDIITTTVTEAKPHFLIAD 475


>gi|169334037|ref|ZP_02861230.1| hypothetical protein ANASTE_00430 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258754|gb|EDS72720.1| hypothetical protein ANASTE_00430 [Anaerofustis stercorihominis DSM
           17244]
          Length = 438

 Score =  424 bits (1091), Expect = e-116,   Method: Composition-based stats.
 Identities = 169/447 (37%), Positives = 255/447 (57%), Gaps = 14/447 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +++ + +YGCQMN  DS ++  M    GY R     DADLI++NTC +RE A  + +  L
Sbjct: 2   KKYLIITYGCQMNENDSEKISGMVEELGYSRTEDEKDADLIIMNTCSVRENANNRFFGNL 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G          K+  DL++ V GC+ Q     ++I  +   V++V G      LP LLE 
Sbjct: 62  GNF----KKLKKKKPDLILAVCGCMMQEGHIVKKIKEKYSFVDIVFGTHNISSLPSLLEE 117

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
               ++++       DK      V    +R+    AF++I +GC+ FC++C+VPYTRG E
Sbjct: 118 CDAKRKLIVEVLEDSDKLAEGLPV----HRQFKHKAFVSIMKGCNNFCSYCIVPYTRGRE 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR    ++ E R+L ++GV E+TLLGQNVN+  GK LD +   F+ LL  +SE++G+ R
Sbjct: 174 RSREYQNILSEVRELANDGVKEVTLLGQNVNS-YGKNLD-DPVPFAKLLKMVSEVEGIER 231

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+ TSHP+D+SD LI+   D   +  ++HLP+QSGS RILK MNR +    Y +++ +I
Sbjct: 232 VRFMTSHPKDLSDELIEVIRDNPKICRHIHLPMQSGSSRILKLMNRHYDKDTYIKLVKKI 291

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R   PD+AI++D IVGFP ET++DF  T+D+  K  +  AF+F YS R GT  + M  Q+
Sbjct: 292 RREIPDVAITTDIIVGFPTETEEDFLDTLDVYKKCEFDTAFTFIYSKREGTKAAVMDGQI 351

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVLN 441
           DE    +R   L K   E  +  N   + + +++LI+   K     L GR+   + V   
Sbjct: 352 DEKTVKDRFDRLLKLHDEIVLKQNKKYLNREVDILIDGKSKTNDNVLTGRTSSFKLVNFT 411

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
            K    GDI+KV+ITDV    L GE++
Sbjct: 412 GKGET-GDIVKVKITDVHTFHLSGEVI 437


>gi|289424090|ref|ZP_06425876.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Peptostreptococcus
           anaerobius 653-L]
 gi|289155515|gb|EFD04194.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Peptostreptococcus
           anaerobius 653-L]
          Length = 482

 Score =  424 bits (1091), Expect = e-116,   Method: Composition-based stats.
 Identities = 165/447 (36%), Positives = 262/447 (58%), Gaps = 12/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + F ++++GCQMN +DS  +  M  S GY R  S D AD+++ NTC +RE A  KVY  L
Sbjct: 39  KSFIIQTFGCQMNEHDSEMLISMLESIGYSRALSEDTADIVIYNTCAVRENAELKVYGNL 98

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G ++++K  R     D+ +VV GC+ Q E   EEI  +   V++V G    Y+ PELL  
Sbjct: 99  GHLKSIKRKR----PDMKIVVCGCMMQQEHIVEEIKAKHQHVDLVFGTHNLYKFPELLAS 154

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
                +++   + ++ +     +     NRK  + AF+ I  GC+ FCT+C+VPYTRG E
Sbjct: 155 TFESDKILVDVWDIDGEV----VEGLKSNRKFDIKAFVNIMYGCNNFCTYCIVPYTRGRE 210

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR    ++ E   L+  GV E+TLLGQNVN++     + ++ +F+DLL  ++EI+GL R
Sbjct: 211 RSRKPKDIISEIEDLVKGGVREVTLLGQNVNSYGKTLEEEDRISFADLLRRVNEIEGLER 270

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+ +SHP+D+SD +I A  D   +  +LHLP Q GS  +LK MNR ++  +Y  II + 
Sbjct: 271 IRFMSSHPKDISDDVIYAMRDCKKVCEFLHLPFQVGSTSLLKKMNRHYSKEDYLNIIKKA 330

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           +   PD+A S+D ++GFPGETD+D + T+D+ +++ +  AF+F YS R GTP + M +Q+
Sbjct: 331 KEEIPDLAFSTDIMIGFPGETDEDVQDTIDICEEVRFDTAFTFIYSKRQGTPAAKMEDQI 390

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVLN 441
            E +K +R   +   +       N    G+I+EVL+E   K+    + G+S   ++V   
Sbjct: 391 PEEIKHKRFDKVLSVINRISGEKNHLYDGKIVEVLVEGASKKDSSIMTGKSRQNKTVNFT 450

Query: 442 -SKNHNIGDIIKVRITDVKISTLYGEL 467
                 +G ++ V+ITD K  +L G+L
Sbjct: 451 GGDESLVGRLVNVKITDPKSFSLNGQL 477


>gi|290968596|ref|ZP_06560134.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Megasphaera genomosp.
           type_1 str. 28L]
 gi|290781249|gb|EFD93839.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Megasphaera genomosp.
           type_1 str. 28L]
          Length = 442

 Score =  424 bits (1091), Expect = e-116,   Method: Composition-based stats.
 Identities = 154/443 (34%), Positives = 244/443 (55%), Gaps = 13/443 (2%)

Query: 28  FVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRI 87
           ++ +YGCQMN  DS R      + GY     MD AD+I+LNTC +RE A  K    +G +
Sbjct: 10  YIATYGCQMNSSDSERYAGQLEALGYRLTEEMDVADVILLNTCCVRETAEGKTLGKIGEL 69

Query: 88  RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147
           ++ K        +L++ V GC+AQ   E +  R+P +++V+G    ++L  LL+  R GK
Sbjct: 70  KHYKER----NPELVIAVTGCMAQEWQERLFERAPHIDLVIGTHNIHKLTALLQE-RQGK 124

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
               + +++       +  D    R     A++ I  GC+KFCT+C+VP+ RG E+SR +
Sbjct: 125 ----SGHALAADMSLPAFHDLPTKRFHKFFAWVPIMNGCNKFCTYCIVPHVRGREVSRPV 180

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
           +++V E  +L  +G  E+TLLGQNVN++     DG    F  L+ +L  + G+ R+RY T
Sbjct: 181 AEIVREVAQLGKDGYKEVTLLGQNVNSYGLDLRDG--TDFGTLVEALETVPGVERIRYMT 238

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
           SHP+DM+  +I A      ++ +LHLP+QSGS+ +LK MNR +T   Y  +I   R    
Sbjct: 239 SHPKDMTPAMIDAIAAGSRVVHHLHLPIQSGSNAMLKRMNRGYTVEHYLDLIAYARKKMS 298

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
           D+ +++D IVGFPGET+  F+ T+ L+ ++GY  A++F YSPR GTP +   +QV    K
Sbjct: 299 DLVLTTDLIVGFPGETEAMFQETLQLIRQVGYDMAYTFIYSPRTGTPAATWPDQVAAAEK 358

Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVLNSKNH- 445
           + RL CL     E  ++ N    G+  EV++E   K   +   GR+   + ++       
Sbjct: 359 SRRLQCLMDIQNETSLALNREMEGRSYEVIVEGPTKNDARHWFGRTRGNKMIIWEEDGSV 418

Query: 446 NIGDIIKVRITDVKISTLYGELV 468
            IGD   V +   +   L G ++
Sbjct: 419 QIGDTADVMVDKGQTWVLKGHVI 441


>gi|189347647|ref|YP_001944176.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Chlorobium
           limicola DSM 245]
 gi|229890475|sp|B3EGT4|MIAB_CHLL2 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|189341794|gb|ACD91197.1| RNA modification enzyme, MiaB family [Chlorobium limicola DSM 245]
          Length = 442

 Score =  424 bits (1091), Expect = e-116,   Method: Composition-based stats.
 Identities = 159/444 (35%), Positives = 247/444 (55%), Gaps = 15/444 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++F++ ++GCQMN  DS  +  +    GY++ +S ++A +I+LNTC +RE A E++  +L
Sbjct: 6   RKFYIHTFGCQMNQADSGIIAALLEQDGYQQASSEEEAGIIMLNTCAVRENAVERIAHYL 65

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             ++  K        +LLV + GC+ Q   EE+    P+++ + GP TY  LP L+  A 
Sbjct: 66  QHVKGFKRK----CPELLVGLTGCIPQYRREELFTVFPVIDFLAGPDTYRVLPVLIAEAG 121

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G R    D++  + ++ ++       R + +TAF+ I  GC+  C FCVVP+TRG E S
Sbjct: 122 KG-RAARLDFNPFETYDGVTQA-----RTQSLTAFVPIMRGCNNMCAFCVVPFTRGRERS 175

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
                V+DE R L ++G  EITLLGQNVN++           FS LL ++S      R+R
Sbjct: 176 HPFGSVLDEVRALAESGCREITLLGQNVNSYHDSQS---GADFSRLLDAVSREAPETRIR 232

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +TTSHP+DMS  L++       +  +LHLPVQSGS R+L  MNR H   +YR  I+ +R 
Sbjct: 233 FTTSHPKDMSHSLVETMASRPNICNHLHLPVQSGSTRMLARMNRGHDIEDYRNKIELLRE 292

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN-MLEQVD 383
             P I++S+D I GF GE+D D   T++L+ ++ +  AF F YS R GT  +  M + V 
Sbjct: 293 RIPGISLSTDLIAGFCGESDADHCQTLELMREVRFDSAFMFYYSVRPGTLAARTMPDDVP 352

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRSPWLQSVVLNS 442
           E VK +RL  +               +G ++EVL+E   +    +L+GR+   + VV + 
Sbjct: 353 EEVKKQRLQEIIDLQNGISAELLRLAIGSVVEVLVESESRRSSDQLMGRTGGNRVVVFDR 412

Query: 443 KNHNIGDIIKVRITDVKISTLYGE 466
             H  GD+++V IT    +TL G 
Sbjct: 413 GIHQPGDMVRVMITGSTSATLIGR 436


>gi|225872143|ref|YP_002753598.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Acidobacterium capsulatum
           ATCC 51196]
 gi|225791726|gb|ACO31816.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Acidobacterium capsulatum
           ATCC 51196]
          Length = 448

 Score =  424 bits (1091), Expect = e-116,   Method: Composition-based stats.
 Identities = 175/459 (38%), Positives = 273/459 (59%), Gaps = 15/459 (3%)

Query: 13  MVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHI 72
           M  Q  +     + F+++++GCQMNV+DS ++      QGY +V     ADLI+ NTC I
Sbjct: 1   MAQQNTNPYSSGKTFYLETFGCQMNVHDSEKVIGTLQQQGYTQVEEEAAADLILYNTCSI 60

Query: 73  REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT 132
           R+KA +KV++ L   + L     + G      V GCVAQ EGE+I  R+P V++V G  +
Sbjct: 61  RDKAEQKVFNRLNDYKKLHAQGKRFG------VLGCVAQQEGEKIFERAPYVSLVSGSAS 114

Query: 133 YYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTF 192
           Y +LPE+L +   G   +     ++D+    +       R      ++TI EGCDKFC +
Sbjct: 115 YRKLPEMLVQLEAGASRIT---GLDDRQTEETFETEFTARSNAHRGYITIIEGCDKFCAY 171

Query: 193 CVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLY 252
           CVVPYTRG E SR  S V+ EAR++ + G  EI LLGQNVN++     +G+K +F++LL 
Sbjct: 172 CVVPYTRGKERSRKSSSVLAEARRMAEAGYTEIQLLGQNVNSYH--DPEGKK-SFAELLA 228

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
           ++ E+ G+VR+R+TTSHPRD +  +++A   +  L  ++HLP+QSGS R+L+ M R +T 
Sbjct: 229 AVGEVPGIVRVRFTTSHPRDFTRDIVEAIDAVPALCDHVHLPIQSGSSRVLQLMQREYTR 288

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
            +Y + I  I++ R  I++++D IVGFPGET DDF  T+ L  ++ Y   F+FKYSPR  
Sbjct: 289 EQYLEKISWIKTARRPISMTTDMIVGFPGETPDDFEETITLAAEVQYDGIFAFKYSPRPN 348

Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS 432
           TP  +M + + E  K+ RL  L  + RE Q       VG++++V++E H   +G+++GR+
Sbjct: 349 TPAIHMSDSIPEEEKSMRLQILLDRQREIQRINYARHVGEVMDVMVEGHNHARGQVIGRT 408

Query: 433 PWLQSVVLNSKN---HNIGDIIKVRITDVKISTLYGELV 468
              +++   +        G  +KVR+T    ++L GE V
Sbjct: 409 SQNKTLNFTTSQPILPAPGSYLKVRVTRSLPNSLVGEAV 447


>gi|326932093|ref|XP_003212155.1| PREDICTED: CDK5 regulatory subunit-associated protein 1-like
           [Meleagris gallopavo]
          Length = 541

 Score =  424 bits (1091), Expect = e-116,   Method: Composition-based stats.
 Identities = 160/488 (32%), Positives = 255/488 (52%), Gaps = 38/488 (7%)

Query: 16  QIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREK 75
            IV +  V +  ++++YGCQMNV D+     +    GY R    D+AD+I+L TC +R+K
Sbjct: 45  HIVGKLTVGRELYLETYGCQMNVNDTEIAWAILQKSGYTRTKEADEADVILLVTCSVRDK 104

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135
           A + +++ L  ++ LK  R +    L + + GC+A+   EEIL R  +V++V GP  Y  
Sbjct: 105 AEQAIWNRLQHLKALKARRRQACLPLRIGILGCMAERLKEEILHREKLVDIVAGPDAYRD 164

Query: 136 LPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
           LP LL  A+ G++  +   S+++ +  +  V        G TAF++I  GCD  C++C+V
Sbjct: 165 LPRLLAVAQSGQQAANVLLSLDETYADILPVQTSAG---GKTAFVSIMRGCDNMCSYCIV 221

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG---------------- 239
           P+TRG E SR ++ ++ E + L D GV E+TLLGQNVN++R                   
Sbjct: 222 PFTRGRERSRPIASILQEVKILSDQGVKEVTLLGQNVNSFRDMSEVQFQSAAAPVLSRGF 281

Query: 240 -----LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP 294
                       F+ LL  +S I   +R+R+T+ HP+D  D +++   +   +   LHLP
Sbjct: 282 STVYKAKPGGLRFAHLLDQVSRIDPEMRIRFTSPHPKDFPDEVLQLIQERHNICKQLHLP 341

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
            QSGS R+L++M R +T   Y +++  +R+  P +++SSDFI GF GET++D + T+ L+
Sbjct: 342 AQSGSTRVLEAMRRGYTREAYLELVQHVRNSIPGVSLSSDFIAGFCGETEEDHQQTVSLL 401

Query: 355 DKIGYAQAFSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQI 413
            ++ Y   F F YS R  T     + + V  +VK  RL  L    RE+    N+A VGQ 
Sbjct: 402 REVRYNVGFLFAYSMRQKTRAYHRLQDDVPADVKRRRLEELITVFREEAARANEAMVGQS 461

Query: 414 IEVLIEKHGKEK-GKLVGRSPWLQSVVLNSKN------------HNIGDIIKVRITDVKI 460
             VL+E   K    +L GR+     V+    +               GD + V++T    
Sbjct: 462 QLVLVEGPSKRSASELCGRNDGNIKVIFPDADTEDAGGCKALVRAQPGDYVLVKVTSASS 521

Query: 461 STLYGELV 468
            TL G L+
Sbjct: 522 QTLKGILL 529


>gi|229890694|sp|A9KMU9|MIAB_CLOPH RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
          Length = 456

 Score =  424 bits (1090), Expect = e-116,   Method: Composition-based stats.
 Identities = 163/457 (35%), Positives = 263/457 (57%), Gaps = 14/457 (3%)

Query: 14  VSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIR 73
           V ++ D+   P  F V+++GCQMN  DS ++  +  + GY   +S ++AD +V NTC +R
Sbjct: 8   VKKVADELGRPLTFNVQTFGCQMNAKDSEKLAGILETIGYVESDS-EEADFVVYNTCTVR 66

Query: 74  EKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQ 131
           E A  +VY  +G + NLK    K+   + + + GC+ Q     E+I +    V++V G  
Sbjct: 67  ENANTRVYGRIGFLGNLK----KKNPHMRIALCGCMMQESHVVEKIKKSYRFVDIVFGTH 122

Query: 132 TYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCT 191
             ++L EL+      K++V   +   DK       +  Y  K    A + I  GC+ FC+
Sbjct: 123 NIFKLAELIYARHTTKKMVIDIWKETDKIVEELPSEQKYKFK----AGVNIMYGCNNFCS 178

Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLL 251
           +C+VPY RG E SR+   ++ E ++L+  GV E+ LLGQNVN+  GK LD E  +F+ LL
Sbjct: 179 YCIVPYVRGRERSRNPEDIIKEIKQLVSKGVVEVMLLGQNVNS-YGKTLD-EPVSFAQLL 236

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
             + +++GL R+R+ T HP+D+S+ +I+   +   +  ++HLPVQSGS  +L  MNR++T
Sbjct: 237 QMVEQVEGLKRIRFMTPHPKDLSNDVIEVMKNSKKICNHIHLPVQSGSTELLMKMNRKYT 296

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
             +Y  ++DRI+   P+I++++D IVGFPGET++DF  T+D+V K+GY  A++F YS R 
Sbjct: 297 KEDYLNLVDRIKMAMPNISLTTDIIVGFPGETEEDFLDTLDVVRKVGYDSAYTFIYSKRS 356

Query: 372 GTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-G 430
           GTP + M  Q+ E V  ER   L   +RE     +    G+I EVL+E+  ++   L+ G
Sbjct: 357 GTPAATMENQIPEEVANERFQRLLTTIRESSSKISKDDEGKIAEVLVEEVNEQDNSLMTG 416

Query: 431 RSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
           R      V        IG+I+ V++++ K     GE+
Sbjct: 417 RLSNNVLVHFKGTKELIGNIVSVKLSECKGFYYMGEM 453


>gi|28872782|ref|NP_057492.2| CDK5 regulatory subunit-associated protein 1 isoform a [Homo
           sapiens]
 gi|29791797|gb|AAH50706.1| CDK5 regulatory subunit associated protein 1 [Homo sapiens]
 gi|56205141|emb|CAI19394.1| CDK5 regulatory subunit associated protein 1 [Homo sapiens]
 gi|119596729|gb|EAW76323.1| CDK5 regulatory subunit associated protein 1, isoform CRA_f [Homo
           sapiens]
 gi|208965952|dbj|BAG72990.1| CDK5 regulatory subunit associated protein 1 [synthetic construct]
          Length = 587

 Score =  424 bits (1090), Expect = e-116,   Method: Composition-based stats.
 Identities = 155/488 (31%), Positives = 257/488 (52%), Gaps = 39/488 (7%)

Query: 17  IVDQCI-VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREK 75
           ++D+ +   ++ ++++YGCQMNV D+     +    GY R +++ +AD+I+L TC IREK
Sbjct: 91  MMDELLGRQRKVYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCSIREK 150

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135
           A + +++ L +++ LK  R +    L + + GC+A+   EEIL R  +V+++ GP  Y  
Sbjct: 151 AEQTIWNRLHQLKALKTRRPRSRVPLRIGILGCMAERLKEEILNREKMVDILAGPDAYRD 210

Query: 136 LPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
           LP LL  A  G++  +   S+++ +  +  V          +AF++I  GCD  C++C+V
Sbjct: 211 LPRLLAVAESGQQAANVLLSLDETYADVMPVQTS---ASATSAFVSIMRGCDNMCSYCIV 267

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG---------------KGL 240
           P+TRG E SR ++ +++E +KL + G+ E+TLLGQNVN++R                +G 
Sbjct: 268 PFTRGRERSRPIASILEEVKKLSEQGLKEVTLLGQNVNSFRDNSEVQFNSAVPTNLSRGF 327

Query: 241 DGEKCT------FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP 294
                T      F+ LL  +S +   +R+R+T+ HP+D  D +++   + D +   +HLP
Sbjct: 328 TTNYKTKQGGLRFAHLLDQVSRVDPEMRIRFTSPHPKDFPDEVLQLIHERDNICKQIHLP 387

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
            QSGS R+L++M R ++   Y +++  IR   P +++SSDFI GF GET++D   T+ L+
Sbjct: 388 AQSGSSRVLEAMRRGYSREAYVELVHHIRESIPGVSLSSDFIAGFCGETEEDHVQTVSLL 447

Query: 355 DKIGYAQAFSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQI 413
            ++ Y   F F YS R  T     + + V E VK  RL  L    RE+    N   VG  
Sbjct: 448 REVQYNMGFLFAYSMRQKTRAYHRLKDDVPEEVKLRRLEELITIFREEATKANQTSVGCT 507

Query: 414 IEVLIEKHGKEKGK-LVGRSPWLQSVVLNSKN------------HNIGDIIKVRITDVKI 460
             VL+E   K     L GR+     V+                    GD + V+IT    
Sbjct: 508 QLVLVEGLSKRSATDLCGRNDGNLKVIFPDAEMEDVNNPGLRVRAQPGDYVLVKITSASS 567

Query: 461 STLYGELV 468
            TL G ++
Sbjct: 568 QTLRGHVL 575


>gi|225374900|ref|ZP_03752121.1| hypothetical protein ROSEINA2194_00523 [Roseburia inulinivorans DSM
           16841]
 gi|225213283|gb|EEG95637.1| hypothetical protein ROSEINA2194_00523 [Roseburia inulinivorans DSM
           16841]
          Length = 480

 Score =  424 bits (1090), Expect = e-116,   Method: Composition-based stats.
 Identities = 163/457 (35%), Positives = 248/457 (54%), Gaps = 14/457 (3%)

Query: 14  VSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIR 73
           V+++ +Q   P  F V ++GCQMN  DS ++  +    GY      + AD ++ NTC +R
Sbjct: 34  VAELAEQKGAPLTFCVTTFGCQMNARDSEKLVGILEKIGYVEAPD-EKADFVIYNTCTVR 92

Query: 74  EKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQ--AEGEEILRRSPIVNVVVGPQ 131
           E A  KVY  LG +   K    K+   +++ + GC+ Q     E+I      V+++ G  
Sbjct: 93  ENANNKVYGRLGYLHGFK----KKNPYMMIGLCGCMMQEPTVVEKIQNSYRFVDLIFGTH 148

Query: 132 TYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCT 191
             Y+  EL+  A     +    +   DK     + D    RK    + + I  GC+ FC+
Sbjct: 149 NIYKFAELIVTALESDSMTIDIWKDTDKI----VEDLPVERKYSFKSGVNIMFGCNNFCS 204

Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLL 251
           +C+VPY RG E SR   ++V E   L+ +GV E+ LLGQNVN+  G+ L+    TF+ LL
Sbjct: 205 YCIVPYVRGRERSREPKEIVREIEHLVQDGVVEVMLLGQNVNS-YGRNLE-HPMTFAQLL 262

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
             + +I+GL R+R+ TSHP+D+SD LI+   +   +  +LHLP+QSGS RILK MNR + 
Sbjct: 263 QEIEKIEGLERIRFMTSHPKDLSDELIEVMKNSKKICNHLHLPLQSGSSRILKIMNRHYD 322

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
              Y +++D+IR+  PDIA+++D IVGFPGET++DF  TMD+V ++ Y  AF+F YS R 
Sbjct: 323 KEHYLELVDKIRAAVPDIALTTDIIVGFPGETEEDFEETMDVVRRVRYDSAFTFIYSKRT 382

Query: 372 GTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-G 430
           GTP + M +Q+ E V  ER   L  +++           GQ + VL+E+   +   LV G
Sbjct: 383 GTPAATMDDQIPEEVIKERFDRLLHEVQTISAEKAGKLTGQTLPVLVEEVNGQDASLVTG 442

Query: 431 RSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
           +     +V        IG I  V + + K     G L
Sbjct: 443 KLTNNSTVHFPGTADMIGTIQNVVLEECKGFYYIGRL 479


>gi|167771421|ref|ZP_02443474.1| hypothetical protein ANACOL_02787 [Anaerotruncus colihominis DSM
           17241]
 gi|167666061|gb|EDS10191.1| hypothetical protein ANACOL_02787 [Anaerotruncus colihominis DSM
           17241]
          Length = 457

 Score =  424 bits (1090), Expect = e-116,   Method: Composition-based stats.
 Identities = 158/448 (35%), Positives = 240/448 (53%), Gaps = 15/448 (3%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P   +V S+GCQ N  D  ++  M    GY   ++ + ADL++ NTC +RE A ++V+  
Sbjct: 18  PPMAYVHSFGCQQNQSDGEKIAGMLAQMGYGFTDAPEQADLVIYNTCAVRENAEDRVFGN 77

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLE 141
           +G +++ K    K    +L+ + GC+ Q +   ++I +  P V++V G    + LPELL 
Sbjct: 78  VGALKSAK----KRRAGMLIGLCGCMMQQQAVADKIKKSYPYVDLVFGTHALHTLPELLY 133

Query: 142 RARFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           R   G+ R   T+ +  +  E + +      R   + A L +  GCD FCT+C+VPY RG
Sbjct: 134 RRLLGENRQFSTENARGEIIEGVPL-----RRSGSIKANLPVMYGCDNFCTYCIVPYVRG 188

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E SR+   V++EAR L+  G  E+ LLGQNVN+  GKGL  E   F+ LL  ++EI+  
Sbjct: 189 RERSRNPGDVLNEARALVGQGYRELLLLGQNVNS-YGKGLS-EPINFAALLRRVNEIEDD 246

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
             +R+ TSHP+D +  LI      + +  ++HLPVQSGSDRIL +MNR +T   Y ++ID
Sbjct: 247 FWIRFMTSHPKDCTHELIDTIAACNKVCRHIHLPVQSGSDRILAAMNRHYTVAHYLELID 306

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
             R+  P +  SSD IVGFPGET  DF  T++L+ ++ +   ++F YSPR GT  + M +
Sbjct: 307 YARARIPGVTFSSDIIVGFPGETRADFEQTLELIKRVRFNALYTFIYSPRPGTKAAGMED 366

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRSPWLQSVV 439
                 K+  L  L     + +       VG  + VL E  G+   G L GR+     V 
Sbjct: 367 PTPAADKSLWLRELLDAESDIRSGMQADAVGTTLRVLAEGEGRSGDGWLTGRTQGNDIVE 426

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGEL 467
             +    IG  + V I   +   L+G L
Sbjct: 427 FTAPRAMIGSFVDVTIERAQNWALFGRL 454


>gi|238924014|ref|YP_002937530.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Eubacterium rectale ATCC
           33656]
 gi|238875689|gb|ACR75396.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Eubacterium rectale ATCC
           33656]
          Length = 479

 Score =  424 bits (1090), Expect = e-116,   Method: Composition-based stats.
 Identities = 167/458 (36%), Positives = 253/458 (55%), Gaps = 16/458 (3%)

Query: 14  VSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIR 73
           V +   +   P  +FVK++GCQMN  DS ++  +    GY      + +D IV NTC +R
Sbjct: 30  VEKKSKEIGRPMTYFVKTFGCQMNARDSEKLVGILEQIGYVEGTD-EHSDFIVYNTCTVR 88

Query: 74  EKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQ 131
           E A  KVY  LG ++N K    K+   + + + GC+ Q     E I +    V++V G  
Sbjct: 89  ENANNKVYGRLGYLQNYK----KKNPLMKIALCGCMMQEPEVVENIKKHYKFVDIVFGTH 144

Query: 132 TYYRLPELL-ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190
             ++  E+L      G +V+D         E L +      RK    + + I  GC+ FC
Sbjct: 145 NIFKFAEILCNNIESGSQVIDIWKDTNQIVEDLPV-----KRKFSFKSGVNIMFGCNNFC 199

Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDL 250
           ++C+VPY RG E SR    ++ E  KL+ +GVCEI LLGQNVN+  GK LD    TF++L
Sbjct: 200 SYCIVPYVRGRERSREPKDIIREIEKLVADGVCEIMLLGQNVNS-YGKTLD-NPITFAEL 257

Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
           L  +++I+GL R+R+ TSHP+D+SD LI A  + D +  ++HLP+QSGS R+LK MNR +
Sbjct: 258 LREVNKIEGLKRIRFMTSHPKDLSDDLIMAIKECDKVCKHMHLPLQSGSSRVLKEMNRHY 317

Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370
              +Y   + R+R   PDIAI++D IVGFPGET++DF  TMD+V ++ Y  AF+F YS R
Sbjct: 318 DKEKYLDEVKRLREQIPDIAITTDIIVGFPGETEEDFLETMDVVKQVRYDSAFTFIYSKR 377

Query: 371 LGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLV 429
            GT  + M  QV ++V  +R   L K+++           G+++ VL E+   ++ G + 
Sbjct: 378 TGTRAATMENQVPDDVVKDRFDRLLKEVQTISSEKAKCYEGKVVPVLAEEMDDQKDGYVT 437

Query: 430 GRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
           GR      V        IG+I  V++ + +     GE+
Sbjct: 438 GRMDNNSIVHFPGTEDMIGNIYNVKLDECRGFYYMGEI 475


>gi|83596005|gb|ABC25364.1| tRNA-i(6)A37 thiotransferase enzyme [uncultured marine bacterium
           Ant29B7]
          Length = 484

 Score =  424 bits (1090), Expect = e-116,   Method: Composition-based stats.
 Identities = 170/467 (36%), Positives = 266/467 (56%), Gaps = 22/467 (4%)

Query: 15  SQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIRE 74
             ++   +  ++ +++SYGCQMN  DS  +  +   +GYE  +   +ADLI+LNTC IR+
Sbjct: 19  EAMIKPGVGSKKLYLESYGCQMNFSDSEIVVSILDKEGYETTSDPKEADLILLNTCSIRD 78

Query: 75  KAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYY 134
           KA + V + L   + +K    +E  D+ + + GC+A+    ++L    +V++VVGP  Y 
Sbjct: 79  KAEQTVRNRLKHFKRIK----RENKDMKIGILGCMAERVKAKLLEEEQLVDLVVGPDAYR 134

Query: 135 RLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCV 194
            LP+L++    GK+ ++   S ++ +  +  V  G     GVTAF++I  GCD  C+FCV
Sbjct: 135 DLPQLMKELDGGKKAINVLLSKDETYHDIEPVRLG---GNGVTAFVSITRGCDNMCSFCV 191

Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA--WRGKGL--------DGEK 244
           VP+TRG E SR+   +V E +KL  +G  E+TLLGQNV++  W G GL        D  K
Sbjct: 192 VPFTRGRERSRNPQTIVVECQKLWADGYKEVTLLGQNVDSYLWYGGGLKKDFKVASDMAK 251

Query: 245 CT---FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
            +   FS LL+ ++     +R+R+ TS+P+DMSD +++A  +   +  Y+HLPVQSGS R
Sbjct: 252 ASALQFSHLLHMVANALPEIRIRFATSNPQDMSDDVLRAIAEHKNICKYIHLPVQSGSSR 311

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
           ILK+MNR H   +Y  +IDR++ + P+ AIS D + GFP ET++D   T+ L+ ++ Y  
Sbjct: 312 ILKAMNRGHDRADYIDLIDRVKRIIPNCAISQDIMSGFPTETEEDHNETLSLMSQVRYNF 371

Query: 362 AFSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
            + F YS R  T  +  + + V   VK  RL  +    +      N A VGQ++EVLIE 
Sbjct: 372 GYMFAYSERPNTMAARKLEDDVPLAVKKRRLQEIIDLQQVHSAERNAANVGQVVEVLIEG 431

Query: 421 HGKEKGK-LVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGE 466
           + K   K + GR+      V   K+H  GD++ V I     +TL G+
Sbjct: 432 YSKRSDKDVFGRTSQNAVAVFPKKHHLPGDLVSVLIRSSTAATLLGD 478


>gi|315651392|ref|ZP_07904417.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Eubacterium saburreum DSM
           3986]
 gi|315486351|gb|EFU76708.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Eubacterium saburreum DSM
           3986]
          Length = 485

 Score =  424 bits (1090), Expect = e-116,   Method: Composition-based stats.
 Identities = 160/446 (35%), Positives = 258/446 (57%), Gaps = 15/446 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
            + V ++GCQMN  DS ++  +    GY    S +DADL++ NTC +RE A +++Y  +G
Sbjct: 46  TYKVVTFGCQMNARDSEKLSGILSGIGYTEAKSEEDADLVLFNTCTVRENANDRLYGRVG 105

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGE--EILRRSPIVNVVVGPQTYYRLPELL-ER 142
           +++  K        D+++ + GC+ Q   E  +I +    V++V G    Y+L E+L + 
Sbjct: 106 QLKKSKEK----NPDMIIGICGCMMQEAEEVEKIKKSYRHVDLVFGTHNIYKLAEILFDH 161

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            +  K++VD   S +   E+L        R+    + + I  GC+ FC++C+VPY RG E
Sbjct: 162 LKTKKQIVDVMESADMIVEKLP-----NKRQYAFKSGVNITFGCNNFCSYCIVPYVRGKE 216

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR   ++ DE + L+ +GV E+ LLGQNVN+  GKGLD EK  F+ LL  +++I GL R
Sbjct: 217 RSRKPEEITDEIKGLVADGVKEVMLLGQNVNS-YGKGLD-EKTNFAMLLDEVAKIDGLER 274

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LR+ T HP+D+SD +I+   +   +  +LHLP+QSGS  ILK MNR +T   Y  ++ RI
Sbjct: 275 LRFMTPHPKDLSDEVIEVMKNNKKICKHLHLPLQSGSSAILKKMNRVYTKESYLDLVKRI 334

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           ++  PDI++++D IVGFPGET++DF  T+D+V ++ Y  AF+F YS R GTP + M EQ+
Sbjct: 335 KAAIPDISLTTDIIVGFPGETEEDFLDTLDVVKQVRYDSAFTFIYSKRSGTPAAKMEEQI 394

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRSPWLQSVVLN 441
           D ++  +R   L K +++          G+ + VL+E + +  +G L G+     +V   
Sbjct: 395 DPDIIKDRFDRLLKTVQDIAAENTKKNEGKCMPVLVENNDEHLEGYLTGKLENNLTVHFK 454

Query: 442 SKNHNIGDIIKVRITDVKISTLYGEL 467
                IG+I+ V + + K     G +
Sbjct: 455 GGKRLIGEIVDVVLDEAKGFYYMGHI 480


>gi|126658288|ref|ZP_01729438.1| tRNA-i(6)A37 modification enzyme MiaB [Cyanothece sp. CCY0110]
 gi|126620437|gb|EAZ91156.1| tRNA-i(6)A37 modification enzyme MiaB [Cyanothece sp. CCY0110]
          Length = 430

 Score =  424 bits (1090), Expect = e-116,   Method: Composition-based stats.
 Identities = 178/441 (40%), Positives = 264/441 (59%), Gaps = 23/441 (5%)

Query: 36  MNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRI 95
           MN  DS RM  +    G++     + AD+I+ NTC IR+ A +KVYS+LGR    K+   
Sbjct: 1   MNKADSERMAGILEDMGFQWSEDPNGADVILYNTCTIRDNAEQKVYSYLGRQAKRKHE-- 58

Query: 96  KEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTD-- 153
               DL +VVAGCVAQ EGE+ILRR P +++V+GPQ   RL +LL +   G +VV T+  
Sbjct: 59  --NPDLTLVVAGCVAQQEGEQILRRVPELDLVMGPQHANRLQDLLTQVFDGNQVVATEPI 116

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           + VED  +          R   VTA++ I  GC++ C++CVVP  RG+E SR+   +  E
Sbjct: 117 HIVEDITKP--------RRDSTVTAWVNIIYGCNERCSYCVVPNVRGVEQSRTPEAIYQE 168

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDG------EKCTFSDLLYSLSEIKGLVRLRYTT 267
              L   G  EITLLGQN++A  G+ L G       + T +DLLY + +I G+ RLR+ T
Sbjct: 169 MELLGKQGYKEITLLGQNIDA-YGRDLPGVTETGRHQHTLTDLLYQVHDISGIERLRFAT 227

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
           SHPR  ++ LIKA  +L  +  + H+P QSG + +LK+M R +T  +YR+IID+IR   P
Sbjct: 228 SHPRYFTERLIKACHELPKVCEHFHIPFQSGDNDVLKAMKRGYTHEKYRKIIDKIRQYMP 287

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
           D +IS+D IVGFPGET++ F  T+ LVD IG+ Q  +  YSPR GTP +    Q+ E +K
Sbjct: 288 DASISADAIVGFPGETEEQFENTLKLVDDIGFDQLNTAAYSPRPGTPAAIWDNQLSEEIK 347

Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSPWLQSVVLNSK-NH 445
           ++RL  L   + ++    +   + +I EVL+E ++ K+  +++GR+   +        + 
Sbjct: 348 SDRLQRLNHLVAQKAAQRSQRYLNRIEEVLVEDQNPKDNSQVMGRTRGNRLTFFKGDIDQ 407

Query: 446 NIGDIIKVRITDVKISTLYGE 466
             G +IKV+IT+V+  +L GE
Sbjct: 408 LKGQLIKVKITEVRAFSLTGE 428


>gi|291524754|emb|CBK90341.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Eubacterium rectale DSM
           17629]
          Length = 479

 Score =  423 bits (1089), Expect = e-116,   Method: Composition-based stats.
 Identities = 167/458 (36%), Positives = 253/458 (55%), Gaps = 16/458 (3%)

Query: 14  VSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIR 73
           V +   +   P  +FVK++GCQMN  DS ++  +    GY      + +D IV NTC +R
Sbjct: 30  VEKKSKEIGRPMTYFVKTFGCQMNARDSEKLVGILEQIGYVEGAD-EHSDFIVYNTCTVR 88

Query: 74  EKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQ 131
           E A  KVY  LG ++N K    K+   + + + GC+ Q     E I +    V++V G  
Sbjct: 89  ENANNKVYGRLGYLQNYK----KKNPLMKIALCGCMMQEPEVVENIKKHYKFVDIVFGTH 144

Query: 132 TYYRLPELL-ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190
             ++  E+L      G +V+D         E L +      RK    + + I  GC+ FC
Sbjct: 145 NIFKFAEILCNNIESGSQVIDIWKDTNQIVEDLPV-----KRKFSFKSGVNIMFGCNNFC 199

Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDL 250
           ++C+VPY RG E SR    ++ E  KL+ +GVCEI LLGQNVN+  GK LD    TF++L
Sbjct: 200 SYCIVPYVRGRERSREPKDIIREIEKLVADGVCEIMLLGQNVNS-YGKTLD-NPITFAEL 257

Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
           L  +++I+GL R+R+ TSHP+D+SD LI A  + D +  ++HLP+QSGS R+LK MNR +
Sbjct: 258 LREVNKIEGLKRIRFMTSHPKDLSDDLIMAIKECDKVCKHMHLPLQSGSSRVLKEMNRHY 317

Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370
              +Y   + R+R   PDIAI++D IVGFPGET++DF  TMD+V ++ Y  AF+F YS R
Sbjct: 318 DKEKYLDEVKRLREQIPDIAITTDIIVGFPGETEEDFLETMDVVKQVRYDSAFTFIYSKR 377

Query: 371 LGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLV 429
            GT  + M  QV ++V  +R   L K+++           G+++ VL E+   ++ G + 
Sbjct: 378 TGTRAATMENQVPDDVVKDRFDRLLKEVQTISSEKAKCYEGKVVPVLAEEMDDQKDGYVT 437

Query: 430 GRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
           GR      V        IG+I  V++ + +     GE+
Sbjct: 438 GRMDNNSIVHFPGTEDMIGNIYNVKLDECRGFYYMGEI 475


>gi|295115178|emb|CBL36025.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [butyrate-producing
           bacterium SM4/1]
          Length = 457

 Score =  423 bits (1089), Expect = e-116,   Method: Composition-based stats.
 Identities = 166/446 (37%), Positives = 258/446 (57%), Gaps = 16/446 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
            F ++++GCQMN +DS ++E +    G+ + ++ ++ADL++ NTC +RE A ++VY  LG
Sbjct: 21  TFHIETFGCQMNAHDSEKLEGILLEAGFVKTDT-EEADLVLYNTCTVRENANQRVYGRLG 79

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELL-ER 142
            + +LK    K+   +L+ + GC+ Q +   E+I +    V+V+ G    Y+L ELL  R
Sbjct: 80  YLNSLK----KKNPRMLIGLCGCMMQEDQVVEKIKKTYRFVDVIFGTHNIYKLAELLFAR 135

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
              GK V+D     +   E L        RK    + + I  GC+ FC++C+VPY RG E
Sbjct: 136 LHTGKMVIDIWKDTDKIVEDLP-----SERKYPFKSGVNIMFGCNNFCSYCIVPYVRGRE 190

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR    ++ E   L+ +GV E+ LLGQNVN+  GK L  E  TF++LL  + +I+GL R
Sbjct: 191 RSRRPEDIIKEIEGLVADGVVEVMLLGQNVNS-YGKNLP-EPITFAELLRRVEQIEGLER 248

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+ TSHP+D+SD LI+   D   +  +LHLP+QSG  RIL  MNRR+T  +Y  + ++I
Sbjct: 249 IRFMTSHPKDLSDELIEVMRDSKKICRHLHLPLQSGRSRILGQMNRRYTKEQYLALAEKI 308

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           ++  PDI++++D IVGFPGET +DF  T+D+V K+ Y  AF+F YS R GTP + M  QV
Sbjct: 309 KTAIPDISLTTDIIVGFPGETKEDFEETLDVVRKVRYDSAFTFIYSKRTGTPAAVMENQV 368

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRSPWLQSVVLN 441
            E+V  ER   L  +++      +   V  + +VL+E+     +G + GR     +V   
Sbjct: 369 PEDVIKERFDRLLSEVQRISNEISGRDVHTVQKVLVEEPDTHAEGMVTGRLSNNITVHFE 428

Query: 442 SKNHNIGDIIKVRITDVKISTLYGEL 467
                IG I+ V + + K     G+L
Sbjct: 429 GSRELIGKIVDVYLEESKGFYYMGKL 454


>gi|313114011|ref|ZP_07799566.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Faecalibacterium cf.
           prausnitzii KLE1255]
 gi|310623713|gb|EFQ07113.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Faecalibacterium cf.
           prausnitzii KLE1255]
          Length = 459

 Score =  423 bits (1089), Expect = e-116,   Method: Composition-based stats.
 Identities = 178/460 (38%), Positives = 256/460 (55%), Gaps = 15/460 (3%)

Query: 12  HMVSQIVDQCI-VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC 70
           ++ +++V Q    P   FV SYGCQ NV D  R++ +    GY   +  +DADLI+ NTC
Sbjct: 10  NIAAELVKQAYDTPPLAFVHSYGCQQNVNDGERIKGVLMDIGYGLCDKPEDADLILFNTC 69

Query: 71  HIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVV 128
            +RE A ++V+  +G ++ LK        DL++ + GC+A  +   E++ +  P V++V 
Sbjct: 70  AVREHAEQRVFGNVGALKGLKEK----KHDLIIGLCGCMANQKHVVEKLRQSYPYVDLVF 125

Query: 129 GPQTYYRLPELL-ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCD 187
           G      LP+L+ ++ +  KRV+          E + I      R+    A+L I  GCD
Sbjct: 126 GVDGIDTLPQLIAQKLQKHKRVLMEPAQRPVIVENIPI-----RRESEFRAWLPIMYGCD 180

Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTF 247
            FCT+C+VPY RG E SR    ++ E R L++ G  EITLLGQNVN+  GKGL+ EK  F
Sbjct: 181 NFCTYCIVPYVRGREKSRKPGDILAEFRGLVEAGYKEITLLGQNVNS-YGKGLE-EKVDF 238

Query: 248 SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307
           SDLL  L  + G   +R+ TSHP+D S  LI        L  +LHLPVQ GSD +LK MN
Sbjct: 239 SDLLNLLCTVPGDYHIRFMTSHPKDASHKLIDTIAAQPKLCKHLHLPVQCGSDELLKKMN 298

Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           R +T  +Y ++I+  R   P I  SSD IVGFPGET+ DF  T++LV K+GY Q F+F Y
Sbjct: 299 RHYTVEQYMELIEYARKTVPGITFSSDIIVGFPGETEADFVKTLELVQKVGYMQLFTFIY 358

Query: 368 SPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK 427
           S R GT  + M +      K +R+  L K   E  ++   A VGQ ++VL+E  G+ +G 
Sbjct: 359 SKRTGTKAAEMPDPTPRKEKTDRMTRLLKVQDEIAMALVKAQVGQTVKVLVEGFGRNEGT 418

Query: 428 LVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
           L GR     +V   +    +G    V +T  + + L GEL
Sbjct: 419 LSGRLDNNLTVEFTADASLMGSYANVHLTGARATVLLGEL 458


>gi|313903997|ref|ZP_07837377.1| RNA modification enzyme, MiaB family [Eubacterium cellulosolvens 6]
 gi|313471146|gb|EFR66468.1| RNA modification enzyme, MiaB family [Eubacterium cellulosolvens 6]
          Length = 487

 Score =  423 bits (1089), Expect = e-116,   Method: Composition-based stats.
 Identities = 165/446 (36%), Positives = 258/446 (57%), Gaps = 18/446 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
            F V ++GCQMN  DS ++  +    GY  V++ ++ADL++ NTC +RE A  KVY  LG
Sbjct: 51  TFHVATFGCQMNARDSEKLRGILEEIGYVPVDT-EEADLVLYNTCTVRENANTKVYGRLG 109

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERA 143
            + + K    K+   +++ + GC+ Q E   + I  +   VN++ G    Y+L EL+ RA
Sbjct: 110 GLHSWK----KKNPHMMIGLCGCMMQEEHVVKTIREKYRFVNLIFGTHNIYKLAELMSRA 165

Query: 144 RFG--KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
                + VVD     +   E+L +     +R     + + I  GC+ FC++C+VPY RG 
Sbjct: 166 LDHPDEMVVDIQQKTDLMVEQLPV-----DRTYKFKSGVNIMYGCNNFCSYCIVPYVRGR 220

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR    ++ E  +L+ +GV E+ LLGQNVN+  GK L+    +F++LL S+++I GL 
Sbjct: 221 EKSREPLDILREIEQLVADGVIEVMLLGQNVNS-YGKTLE-NPVSFAELLESVAQIDGLR 278

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLD-VLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
           R+R+ TSHP+D+SD LI         + P+LHLP+QSGS R+LK MNRR+T   Y +++D
Sbjct: 279 RVRFMTSHPKDLSDELIAVMAKYPDKICPHLHLPLQSGSSRLLKHMNRRYTKESYLELVD 338

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           +IR+  PDI++++D IVG+PGET++DF+ T+++V+K+ Y  AF+F YS R GTP + M +
Sbjct: 339 KIRAAMPDISLTTDIIVGYPGETEEDFQETLEVVEKVRYDSAFTFIYSKRSGTPAAKMDD 398

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVV 439
           QV E+V  +R   L   ++           GQ+ EVL+E   + + G + GR      V 
Sbjct: 399 QVPEDVVKDRFNRLLLLVQNIGREQTARFEGQVKEVLVEHINEQDPGLVTGRMDNNSVVH 458

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYG 465
                  IG I+KV++         G
Sbjct: 459 FPGDASLIGQIVKVKLDKCHGFYYLG 484


>gi|322421071|ref|YP_004200294.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Geobacter sp. M18]
 gi|320127458|gb|ADW15018.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Geobacter sp. M18]
          Length = 441

 Score =  423 bits (1089), Expect = e-116,   Method: Composition-based stats.
 Identities = 173/444 (38%), Positives = 267/444 (60%), Gaps = 9/444 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ +++++GCQMNV DS ++  +    GY+R     +ADL++LNTC IR  A ++VY  L
Sbjct: 5   KKLYLETFGCQMNVSDSEKIVTLMKGIGYQRTADPVEADLVLLNTCSIRATAEQRVYGHL 64

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           G+ +++K    K+   L++ V GCVAQ EGE +L+++P VN+V G    + L +++  A 
Sbjct: 65  GKFKSMK----KQKPGLIIGVGGCVAQQEGERLLKKAPFVNLVFGTHNLHLLQKMVSGAE 120

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            GK+ V TD+  ++K   L         + GV+ F+T+ +GCD FC +C+VP+ RG EIS
Sbjct: 121 EGKQSVATDFLDDEKRFDLFP---HAESEGGVSRFVTVMQGCDNFCAYCIVPHVRGREIS 177

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           RS ++VV+E   L   GV E+TLLGQNVN+  G    GE   F DLL  ++ + G+ RLR
Sbjct: 178 RSAARVVEEVAALAAAGVTEVTLLGQNVNS-YGFREAGEP-DFPDLLRMVARVDGIERLR 235

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +TTSHP+D+S  LI+    +  L P++HLP QSGSD++LK MNR +T  +Y   +  +R 
Sbjct: 236 FTTSHPKDISPRLIECFAGIPQLAPHIHLPAQSGSDQVLKKMNRGYTRADYLGKVRALRD 295

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             P+I  + D IVGFPGE    F  TM+L++++ YA  FSF YS R GT  +   ++V  
Sbjct: 296 ACPEIQFTGDMIVGFPGEDGAAFEQTMELLEEVQYADLFSFIYSARPGTKAAEFPDEVKR 355

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
             K  RL  LQ   ++  ++ N++ VG + +VL+E        L GR+   +  V+    
Sbjct: 356 AEKQARLERLQAAQKKVTLARNESFVGGVQQVLVEGLSTSGDSLFGRTGGNRGTVMAGDP 415

Query: 445 HNIGDIIKVRITDVKISTLYGELV 468
              G I++VRIT+   + L GE++
Sbjct: 416 SLAGRIVEVRITEGLQTLLKGEVL 439


>gi|313206813|ref|YP_004045990.1| tRNA-i(6)a37 thiotransferase enzyme miab [Riemerella anatipestifer
           DSM 15868]
 gi|312446129|gb|ADQ82484.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Riemerella anatipestifer
           DSM 15868]
 gi|315023886|gb|EFT36888.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Riemerella
           anatipestifer RA-YM]
 gi|325335747|gb|ADZ12021.1| 2-methylthioadenine synthetase [Riemerella anatipestifer RA-GD]
          Length = 477

 Score =  423 bits (1089), Expect = e-116,   Method: Composition-based stats.
 Identities = 177/468 (37%), Positives = 259/468 (55%), Gaps = 23/468 (4%)

Query: 16  QIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREK 75
            I ++    ++ F++SYGCQMN  DS  +  +   +GY     +++ADLI+LNTC IREK
Sbjct: 16  AIAEKEGNSKKLFLESYGCQMNFSDSEIVASILNDEGYNTTLKVEEADLILLNTCSIREK 75

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135
           A + V   L + +NLK    KE   L V V GC+A+    + L    +V++VVGP  Y  
Sbjct: 76  AEQTVRMRLSQFKNLK----KEKPSLTVGVLGCMAERLKTKFLEEEQLVDLVVGPDAYRD 131

Query: 136 LPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
           LP LL+    G+  ++   S E+ +  ++ V  G     GVTAF+TI  GCD  CTFCVV
Sbjct: 132 LPNLLKETEDGRDAINVILSKEETYADINPVRLG---GNGVTAFVTITRGCDNMCTFCVV 188

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA--WRGKGL--DGEKCT----- 246
           P+TRG E SR    ++ E ++L +NG  EITLLGQNV++  W G G   D +K T     
Sbjct: 189 PFTRGRERSRDPHSIIKECQELWENGYKEITLLGQNVDSYLWYGGGPKKDFDKATEMQKA 248

Query: 247 ----FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
               FS LL  +++    +R+R++TS+P+DMS  + +       +  Y+HLPVQ+GS+++
Sbjct: 249 TAVDFSQLLEMVAKAVPEMRIRFSTSNPQDMSLEVFRKMAQYPNICKYVHLPVQTGSNKM 308

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           L+ MNR+HT  EY ++I   R + PD+A S D IVGF  ET++D + T+ L+ ++ Y   
Sbjct: 309 LELMNRQHTREEYLELIREARKIVPDVAFSQDMIVGFCNETEEDHQDTLSLMREVEYDYG 368

Query: 363 FSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKH 421
           + F YS R GTP    M + V   VK  RL  +     E         VG+  E+LIE  
Sbjct: 369 YMFAYSERPGTPAHKKMEDNVPAEVKKRRLQEVIDLQGELSRKRMKGYVGRHHEILIEGE 428

Query: 422 G-KEKGKLVGRSPWLQSVVLNSKNH-NIGDIIKVRITDVKISTLYGEL 467
             K+K +  GR+      V + K    IGDI+ V + D    TL G +
Sbjct: 429 SKKDKNQWKGRNSQNAVCVFDKKEGQKIGDIVSVFVYDNTQGTLLGRV 476


>gi|227504866|ref|ZP_03934915.1| possible tRNA 2-methylthioadenine synthetase [Corynebacterium
           striatum ATCC 6940]
 gi|227198557|gb|EEI78605.1| possible tRNA 2-methylthioadenine synthetase [Corynebacterium
           striatum ATCC 6940]
          Length = 537

 Score =  423 bits (1089), Expect = e-116,   Method: Composition-based stats.
 Identities = 164/483 (33%), Positives = 250/483 (51%), Gaps = 31/483 (6%)

Query: 5   IKLIGVAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADL 64
           + L  +A       D     + + V+++GCQMNV+DS R+  +    GY       + DL
Sbjct: 17  VSLGQIAQSAGTNPDGSA--RTYEVRTFGCQMNVHDSERISGLLEEAGYVAAAEEQEPDL 74

Query: 65  IVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIV 124
           IV NTC +RE A +++Y  LG ++  K +       + + V GC+AQ + + +L  +P V
Sbjct: 75  IVFNTCAVRENADKRLYGTLGALKKTKENH----PGMQIAVGGCLAQKDKDTVLDNAPWV 130

Query: 125 NVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQE 184
           + V G      LP LLERAR             + F  +        R+     ++++  
Sbjct: 131 DAVFGTHNMAALPTLLERARHNDEAQVEIVDSLEAFPSVLPA----KRESAYAGWVSVSV 186

Query: 185 GCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE- 243
           GC+  CTFC+VP  RG E  R    ++ E + L+D GV E+TLLGQNVNA+     D + 
Sbjct: 187 GCNNTCTFCIVPSLRGKEEDRRPGDILAEVQALVDQGVSEVTLLGQNVNAYGVNFADPDL 246

Query: 244 ---KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300
              K  FS LL  + +I+GL RLR+T+ HP + +  +I A  +   + P LH+P+QSGSD
Sbjct: 247 PRDKFAFSKLLREVGKIEGLERLRFTSPHPAEFTSDVIDAMAETPAVCPQLHMPLQSGSD 306

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
           RILK M R + + ++  I+D +R   P  AI++D IVGFPGET++DF ATMD+V +  +A
Sbjct: 307 RILKEMRRSYRSKKFLAILDEVREKMPHAAITTDIIVGFPGETEEDFEATMDVVKRARFA 366

Query: 361 QAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
            AF+F+YSPR GTP + M +QV +++  ER   L       Q   N   +G   E+L++ 
Sbjct: 367 SAFTFQYSPRPGTPAAEMEQQVPKHIVQERFERLVALQDSIQAEENAKLIGTDAELLVQA 426

Query: 421 HGKEKG----KLVGRSPWLQSVVL-------------NSKNHNIGDIIKVRITDVKISTL 463
            G  K     +L GRS   + V                + +   GD++   +TD     L
Sbjct: 427 EGGRKAGETHRLTGRSRDGRLVHFAPVLVDAAGTRTEITADIRPGDVVHTTVTDAGSFFL 486

Query: 464 YGE 466
             +
Sbjct: 487 VAD 489


>gi|88855436|ref|ZP_01130100.1| hypothetical protein A20C1_01396 [marine actinobacterium PHSC20C1]
 gi|88815343|gb|EAR25201.1| hypothetical protein A20C1_01396 [marine actinobacterium PHSC20C1]
          Length = 514

 Score =  423 bits (1089), Expect = e-116,   Method: Composition-based stats.
 Identities = 162/462 (35%), Positives = 257/462 (55%), Gaps = 19/462 (4%)

Query: 13  MVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHI 72
           M   I ++   P+ + V++YGCQMNV+DS R+     + GY R      AD++V+NTC +
Sbjct: 1   MEDMIDEKLATPRSYEVRTYGCQMNVHDSERLSGSLEAAGYIRATK-GQADVVVINTCAV 59

Query: 73  REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT 132
           RE A  K+Y  LG + ++K    +E   + + V GC+AQ +   IL ++P V+VV G   
Sbjct: 60  RENADNKLYGNLGMLASVK----REHEGMQIAVGGCLAQKDKNVILEKAPWVDVVFGTHN 115

Query: 133 YYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTF 192
              LP LLERAR  +          D F           R+   +A+++I  GC+  CTF
Sbjct: 116 MGSLPTLLERARHNEEAQLEILESLDVFPSTLPTR----RESTHSAWVSISVGCNNTCTF 171

Query: 193 CVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLY 252
           C+VP  RG E  R    ++ E + ++D+G  EITLLGQNVN++  +   G++  FS LL 
Sbjct: 172 CIVPALRGKEKDRRAGDILSEVQAIVDDGAIEITLLGQNVNSYGVEF--GDRQAFSKLLR 229

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
           +   I GL R+R+T+ HP   +D +I A  +   +MP LH+P+QSGSDRILK+M R + +
Sbjct: 230 ATGAIDGLERVRFTSPHPAAFTDDVIDAMAETPNVMPQLHMPLQSGSDRILKAMRRSYRS 289

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
            ++  I++R+R+  P  AIS+D IVGFPGET++DF  T+ +V++  +A A++F+YS R G
Sbjct: 290 TKFLGILERVRAQMPHAAISTDIIVGFPGETEEDFAETLRVVEEARFASAYTFQYSIREG 349

Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE----KHGKEKGKL 428
           TP + M +Q+ + +  ER   L           N+  VG+ ++V++     +   E  +L
Sbjct: 350 TPAATMEDQIPKEIVQERYERLAALQDRISREENEKQVGRTVQVMVTATEGRKQAETDRL 409

Query: 429 VGRSPWLQSVVLNSKNH----NIGDIIKVRITDVKISTLYGE 466
            GR+   + V  N          GD++ + I++     L  +
Sbjct: 410 SGRAEDSRLVHFNVPEASPVPRPGDVVTLTISEASTFHLVAD 451


>gi|311113252|ref|YP_003984474.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Rothia dentocariosa ATCC
           17931]
 gi|310944746|gb|ADP41040.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Rothia dentocariosa ATCC
           17931]
          Length = 505

 Score =  423 bits (1088), Expect = e-116,   Method: Composition-based stats.
 Identities = 152/458 (33%), Positives = 253/458 (55%), Gaps = 18/458 (3%)

Query: 15  SQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIRE 74
           ++       P+ + V+++GCQMNV+DS RM  +  + GY R    ++ DL+V NTC +RE
Sbjct: 8   AESATSAETPRTYEVRTFGCQMNVHDSERMSGLLEANGYVRAAEGEEPDLVVFNTCAVRE 67

Query: 75  KAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYY 134
            A+ ++Y  LG++ ++K    +    + + V GC+AQ +   I+ ++P V+VV G     
Sbjct: 68  NASNRLYGHLGQLASVK----RRHEGMQIAVGGCLAQKDQNTIIEKAPWVDVVFGTHNIG 123

Query: 135 RLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCV 194
            LP LLERAR             + F           R    + +++I  GC+  CTFC+
Sbjct: 124 SLPTLLERARHNHEAQAELLESLEVFPSTLPT----KRDHVYSGWVSISVGCNNTCTFCI 179

Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL 254
           VP  RG E  R    ++ E + L+D+G  E+TLLGQNVN++  +   G++  FS LL + 
Sbjct: 180 VPSLRGKEKDRRPGDILAEVQALVDDGAIEVTLLGQNVNSYGVEF--GDRQAFSKLLRAC 237

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
            +IKGL R+R+T+ HP   +D +I+A  +   +MP LH+P+QSGSD++LK M R + + +
Sbjct: 238 GDIKGLERVRFTSPHPAMFTDDVIEAMAETPNVMPVLHMPLQSGSDKVLKDMRRSYRSKK 297

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
           +  I++++R   P   I++D IVGFPGE+++DF+ T+ +V++  ++ AF+F+YS R GTP
Sbjct: 298 FLGILEKVRERIPHAVITTDIIVGFPGESEEDFQDTLRVVEQARFSSAFTFQYSIRPGTP 357

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG----KLVG 430
            + M  Q+ ++V  ER   L           N   +G+ +E+++      K     +L G
Sbjct: 358 AATMENQIPKDVVQERYERLVALQDRIAGEENHKQLGKTVELMVVAESGRKAQQTHRLAG 417

Query: 431 RSPWLQSVVLN----SKNHNIGDIIKVRITDVKISTLY 464
           R P  + V  +     +    GD++ V IT+     L 
Sbjct: 418 RGPDQRLVHFSVPAGCEEPRPGDMVTVPITEAGSFHLI 455


>gi|10436223|dbj|BAB14760.1| unnamed protein product [Homo sapiens]
          Length = 587

 Score =  423 bits (1088), Expect = e-116,   Method: Composition-based stats.
 Identities = 155/488 (31%), Positives = 256/488 (52%), Gaps = 39/488 (7%)

Query: 17  IVDQCI-VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREK 75
           ++D+ +   ++ ++++YGCQMNV D+     +    GY R +++ +AD+I+L TC IREK
Sbjct: 91  MMDELLGRQRKVYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCSIREK 150

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135
           A + +++ L +++ LK  R +    L + + GC+A+   EEIL R  +V+++ GP  Y  
Sbjct: 151 AEQTIWNRLHQLKALKTRRPRSRVPLRIGILGCMAERLKEEILNREKMVDILAGPDAYRD 210

Query: 136 LPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
           LP LL  A  G++  +   S+++ +  +  V          +AF++I  GCD  C++C+V
Sbjct: 211 LPRLLAVAESGQQAANVLLSLDETYADVMPVQTS---ASATSAFVSIMRGCDNMCSYCIV 267

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG---------------KGL 240
           P+TRG E SR ++ +++E +KL + G+ E+TLLGQNVN++R                +G 
Sbjct: 268 PFTRGRERSRPIASILEEVKKLSEQGLKEVTLLGQNVNSFRDNSEVQFNSAVPTNLSRGF 327

Query: 241 DGEKCT------FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP 294
                T      F+ LL  +S +   +R+R+T+ HP+D  D +++   + D +   +HLP
Sbjct: 328 TTNYKTKQGGLRFAHLLDQVSRVDPEMRIRFTSPHPKDFPDEVLQLIHERDNICKQIHLP 387

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
            QSGS R+L++M R ++   Y +++  IR   P +++SSDFI GF GET++D   T+ L+
Sbjct: 388 AQSGSSRVLEAMRRGYSREAYVELVHHIRESIPGVSLSSDFIAGFCGETEEDHVQTVSLL 447

Query: 355 DKIGYAQAFSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQI 413
            +  Y   F F YS R  T     + + V E VK  RL  L    RE+    N   VG  
Sbjct: 448 REAQYNMGFLFAYSMRQKTRAYHRLKDDVPEEVKLRRLEELITIFREEATKANQTSVGCT 507

Query: 414 IEVLIEKHGKEKGK-LVGRSPWLQSVVLNSKN------------HNIGDIIKVRITDVKI 460
             VL+E   K     L GR+     V+                    GD + V+IT    
Sbjct: 508 QLVLVEGLSKRSATDLCGRNDGNLKVIFPDAEMEDVNNPGLRVRAQPGDYVLVKITSASS 567

Query: 461 STLYGELV 468
            TL G ++
Sbjct: 568 QTLKGHVL 575


>gi|306821117|ref|ZP_07454733.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
 gi|304550810|gb|EFM38785.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
          Length = 475

 Score =  423 bits (1088), Expect = e-116,   Method: Composition-based stats.
 Identities = 175/447 (39%), Positives = 264/447 (59%), Gaps = 17/447 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++F + ++GCQMN +DS  ++ M  + GYE  N + DAD+++ NTC IRE A  + +  +
Sbjct: 37  KKFIIVTFGCQMNEHDSENIKGMLTNMGYEETNKIYDADVVLYNTCAIRENAETRFFGNI 96

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G ++N+K    K   ++++   GC+ Q     +E+  +   VN++ G    Y+ PELL  
Sbjct: 97  GALKNIK----KNKPNMIIATCGCMMQEPHIVKELTSKYKHVNIIFGTHNIYKFPELLYT 152

Query: 143 ARF---GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
                  + VVD      +  E L  V     R+    AF+ I  GC+ FCT+C+VP+TR
Sbjct: 153 YISLIDKETVVDVWDIDGNIVEGLPSV-----RRYDFKAFVNIMYGCNNFCTYCIVPFTR 207

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G E SR    ++DE + L  N V EITLLGQNVN++     D  K +F  LL  ++++  
Sbjct: 208 GRERSRLPKDILDEVKLLAQNNVKEITLLGQNVNSYGNNFTD--KYSFPMLLEDINKVDN 265

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           + R+R+ TSHP+D+SD LI++ G LD L  YLHLPVQ+GSD +LK MNR++TAY+Y + I
Sbjct: 266 IRRIRFMTSHPKDISDELIESFGRLDKLCDYLHLPVQAGSDSVLKRMNRKYTAYDYMKKI 325

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
           ++I+ V PDIA+++D IVGFPGET++DF+ T+ +V ++ Y  AF F YS R GT    M 
Sbjct: 326 EKIKKVVPDIALTTDIIVGFPGETEEDFQQTLKIVKEVEYDSAFMFMYSTRKGTAAEKME 385

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSV 438
           + +DE +K +R   L +   E     N   +G I EVL+E   K+    L GR+   + +
Sbjct: 386 DHIDEEIKKDRFNRLLETANEIAAKKNKQYLGNIEEVLVEGFSKKNESVLSGRNTKSKLI 445

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYG 465
                   IG ++KV+ITDVK  +L G
Sbjct: 446 NFIGDETKIGQLVKVKITDVKSFSLNG 472


>gi|225163478|ref|ZP_03725792.1| 2-alkenal reductase [Opitutaceae bacterium TAV2]
 gi|224801895|gb|EEG20177.1| 2-alkenal reductase [Opitutaceae bacterium TAV2]
          Length = 494

 Score =  423 bits (1088), Expect = e-116,   Method: Composition-based stats.
 Identities = 173/471 (36%), Positives = 260/471 (55%), Gaps = 33/471 (7%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R ++K+YGCQMN  DS  +  M  ++GY  VN+ DD D+++LNTC +R+ A +K      
Sbjct: 3   RVYIKTYGCQMNERDSNAVAAMLRARGYRIVNTEDDCDIMLLNTCSVRDAAEQKALGKAS 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +   K    K   D ++ + GC+AQ  G EIL + P V++++G Q ++++P  LE  R 
Sbjct: 63  YMSQRK----KRNPDFVLGILGCMAQNRGAEILEKLPDVDLIIGTQKFHQVPGYLENLRA 118

Query: 146 ----GKRVVDTDYSVEDKFERLSIVDGGY-----------------------NRKRGVTA 178
               G  V +T   + ++    + +   Y                            VTA
Sbjct: 119 ARDAGLPVGETIIDIAEEPGSQNTIRDHYFPPAPPASSAISAASDNSPLPPPPPAPQVTA 178

Query: 179 FLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK 238
           +++IQ+GC+  C FC+VP TRG E SR +  +V E R L D G+ EITLLGQ V ++  +
Sbjct: 179 YVSIQQGCNMDCAFCIVPKTRGDERSRPMDDIVAECRALADRGIREITLLGQIVTSYGRR 238

Query: 239 GLD--GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQ 296
             +  G    F  L+  +  I+G+ R+R+T+ HPR     L+ A+  L  L  Y+HLP+Q
Sbjct: 239 DYEHTGGITPFVQLIEKVHAIEGIDRIRFTSPHPRGFKQDLVDAYARLPKLCEYVHLPMQ 298

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
           SGSDRIL++M+R ++   YRQI+  +R+ RPD+  S+D IVGFPGETD +F  T  L ++
Sbjct: 299 SGSDRILRAMHRPYSRDRYRQIVQSLRAARPDMYFSTDIIVGFPGETDAEFEDTRTLFEE 358

Query: 357 IGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEV 416
             Y  A+ FKYS R GTP + M +Q+ E+VK  R   L + LR      N A +G I EV
Sbjct: 359 CNYDMAYIFKYSVRTGTPAAVMGDQIPEDVKEHRNQVLLEILRRNSERRNAALLGTIEEV 418

Query: 417 LIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
           L+E   K   +  GR+   +  + ++    IG ++ +RI    ISTLYGEL
Sbjct: 419 LVEGPDKTGQRYTGRTRGNRVTIFDASPRLIGQLVPLRIQRASISTLYGEL 469


>gi|194335519|ref|YP_002017313.1| RNA modification enzyme, MiaB family [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|229890587|sp|B4SCB6|MIAB_PELPB RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|194307996|gb|ACF42696.1| RNA modification enzyme, MiaB family [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 440

 Score =  423 bits (1088), Expect = e-116,   Method: Composition-based stats.
 Identities = 157/447 (35%), Positives = 254/447 (56%), Gaps = 14/447 (3%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
              F++ ++GCQMN  DS  +  +    GY    S D A +I+LNTC +RE A +++  +
Sbjct: 6   KNTFYIHTFGCQMNQADSATITSLLQQAGYVAAESEDRAGIILLNTCAVRENAVDRIEHY 65

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           L  ++ LK    +    L+V + GC+ Q + EE+   SP ++++ GP TY  LP+L+E+A
Sbjct: 66  LQHLQGLKKRDKR----LIVGILGCIPQHQREEMFATSPAIDLLAGPDTYRTLPQLIEQA 121

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           R G +    D++V + +E +  V     R+  ++AF+ +  GC+  C +CVVP+TRG E 
Sbjct: 122 RSGAKPFSLDFNVAETYEGIDPV-----RQGSISAFVPVMRGCNNMCAYCVVPFTRGRER 176

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           S     V+ E +KL+ +G  EITLLGQNVN++       +   F+ LL ++S      R+
Sbjct: 177 SHPFRAVMGEVQKLVASGYSEITLLGQNVNSY---DDPEQGVNFAALLDAVSCAAPQARV 233

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+TTSHP+D+S  L++   +   +  ++HLPVQSGS   L  MNR HT  EY + I  IR
Sbjct: 234 RFTTSHPKDISGELVRTIANRPNICNHIHLPVQSGSTATLGRMNRGHTIEEYLEKIALIR 293

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN-MLEQV 382
           S+ P + +S+D I GF GE ++D +A+++L+  + +  A+ F YS R GT  +  +++ V
Sbjct: 294 SLLPGVTLSTDIIAGFCGEQEEDHQASLELLSTLRFDSAYMFYYSTRPGTFAARTLVDDV 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLVGRSPWLQSVVLN 441
            E VK  RL  +               +G ++EVL E   K    +L+GR+P  ++VV +
Sbjct: 354 PEVVKKRRLQEIIDLQNTISGELFQQAIGSVVEVLAESESKRSAEQLMGRTPGNRAVVFD 413

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
            + +  GD+++V IT    +TL G  V
Sbjct: 414 REGYRPGDLVRVLITAATSATLTGRPV 440


>gi|269123553|ref|YP_003306130.1| RNA modification enzyme, MiaB family [Streptobacillus moniliformis
           DSM 12112]
 gi|268314879|gb|ACZ01253.1| RNA modification enzyme, MiaB family [Streptobacillus moniliformis
           DSM 12112]
          Length = 438

 Score =  423 bits (1088), Expect = e-116,   Method: Composition-based stats.
 Identities = 155/446 (34%), Positives = 259/446 (58%), Gaps = 13/446 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++  V +YGCQMNV +S +++ +F + GY+ V+ +DD D + LNTC +RE AA +++  L
Sbjct: 2   KKATVITYGCQMNVNESAKIKKIFQNMGYQVVDEIDDCDAVFLNTCTVREGAATQIFGKL 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           G +  LK          ++ + GC AQ  G E++++ P++++V+G Q   R+P+ +E+  
Sbjct: 62  GELIELKK-----NKGTVIGITGCFAQEAGFELIKKFPMIDIVMGNQNIGRIPDAIEKIL 116

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
             +    +++ V    E         +     TA ++I  GCDK C+FC+VPY RG E S
Sbjct: 117 KHE----SEHEVYTDNEDELPPRLDADFGSDKTASISISYGCDKRCSFCIVPYVRGKERS 172

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
             +  ++ + R  +  G  EI LLGQNVNA+  K  +G+  TF+ LL  + +I+G   LR
Sbjct: 173 VPMEDILSDVRHYLKKGAKEIVLLGQNVNAYGKKFKNGD--TFAKLLDEICKIEGDYILR 230

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +T+ HP+D +D +I      + +   +H+P+QSGS +ILK M R +T  ++  +  +I+ 
Sbjct: 231 FTSPHPKDFTDDVIDVIARNEKIARCIHMPLQSGSTKILKKMIRGYTKEQFLDLAYKIKE 290

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             P+ ++++D IVGFPGETD+DF+ T+D+V+K+G+  A+ F YS R GT  + M EQV E
Sbjct: 291 RIPEASLTTDIIVGFPGETDEDFKDTLDVVEKVGFENAYIFMYSIRRGTRAAIMDEQVSE 350

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVLNSK 443
            +K ERL  L      +    +   +G+++ VL+E   K+  + L GR+   + V+ +  
Sbjct: 351 EIKKERLQKLNNLQDRRAYKESVKYLGKVMRVLVEGPSKKNKEILTGRTSTNKVVLFSGD 410

Query: 444 NHNI-GDIIKVRITDVKISTLYGELV 468
                G  + V+I + K  TLYGE+V
Sbjct: 411 AKLYRGRFVNVKINECKTWTLYGEIV 436


>gi|58698340|ref|ZP_00373255.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Wolbachia endosymbiont of
           Drosophila ananassae]
 gi|58535130|gb|EAL59214.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Wolbachia endosymbiont of
           Drosophila ananassae]
          Length = 427

 Score =  423 bits (1088), Expect = e-116,   Method: Composition-based stats.
 Identities = 228/433 (52%), Positives = 308/433 (71%), Gaps = 13/433 (3%)

Query: 36  MNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRI 95
           MNVYDS+ ME++    G+  V+    ADL++LNTCHIREKAAEK+YS LG+I +L+    
Sbjct: 1   MNVYDSVLMENVIKPLGFNVVSDAGKADLVILNTCHIREKAAEKLYSELGKIHSLRKE-- 58

Query: 96  KEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK-RVVDTDY 154
                + +VVAGCVAQAEGEE+ RR+P V++VVGPQ+   LPEL+ +A   K  V++TD+
Sbjct: 59  -----MTIVVAGCVAQAEGEEVFRRAPFVDIVVGPQSIATLPELIVKASRSKGHVINTDF 113

Query: 155 SVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEA 214
               KF++L   D  Y   +G +AFL IQEGCDKFCTFCVVPYTRG E SR ++++  EA
Sbjct: 114 PEVAKFDKLP--DECYGNSQGSSAFLAIQEGCDKFCTFCVVPYTRGAEYSRPVNEIFREA 171

Query: 215 RKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMS 274
            KL+ NG  EI LLGQNVNA+ G+  +GE      L+  +++I+ L R+RYTTSHPRDM 
Sbjct: 172 LKLVANGANEINLLGQNVNAYHGE-CEGEVWDLGKLISHIAKIEKLERIRYTTSHPRDMH 230

Query: 275 DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSD 334
           + L  AH +   LMP++HLPVQSGS++IL +MNR+HTA EY +IIDR R ++P+I  SSD
Sbjct: 231 ESLYLAHAEEPKLMPFVHLPVQSGSNKILHAMNRKHTAEEYLEIIDRFRKLKPEIEFSSD 290

Query: 335 FIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCL 394
           FIVGFPGET+ DF  TM LV+K+ YAQA+SFKYSPR GTPG+   +QV E VK ERLL L
Sbjct: 291 FIVGFPGETEKDFEETMKLVEKVRYAQAYSFKYSPRPGTPGAERKDQVPEEVKTERLLRL 350

Query: 395 QKKLREQQVSFNDACVGQIIEVLI-EKHGKEKGKLVGRSPWLQSVVLNSKNHNIGD-IIK 452
           QK + +QQ+ FN + VG+ I VL  +K GK + +++G+SP++QSV ++       D I+ 
Sbjct: 351 QKLISKQQLEFNQSMVGKTIPVLFSDKKGKHQNQIIGKSPYMQSVCIDDSEDKYRDKIVN 410

Query: 453 VRITDVKISTLYG 465
           V++ + + S+L G
Sbjct: 411 VKVLEARQSSLLG 423


>gi|229891226|sp|Q0IC70|MIAB_SYNS3 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
          Length = 473

 Score =  423 bits (1087), Expect = e-116,   Method: Composition-based stats.
 Identities = 178/455 (39%), Positives = 265/455 (58%), Gaps = 23/455 (5%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           +++ ++GCQMN  DS RM  +  + GY+  N+  DADL++ NTC IR+ A +KVYS+LGR
Sbjct: 29  YWITTFGCQMNKADSERMAGILETMGYQEANAELDADLVLYNTCTIRDNAEQKVYSYLGR 88

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
               K    +   +L +VVAGCVAQ EGE +LRR P +++V+GPQ   RL  LL + + G
Sbjct: 89  QAIRK----RTNPNLTLVVAGCVAQQEGESLLRRVPELDLVMGPQHANRLETLLTQVQAG 144

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           ++VV T+       E L+       R     A++ +  GC++ CT+CVVP  RG E SR 
Sbjct: 145 QQVVATE--DHHILEDLTTAR----RDSSTCAWVNVIYGCNERCTYCVVPSVRGKEQSRL 198

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG------EKCTFSDLLYSLSEIKGL 260
              ++ E   L   G  EITLLGQN++A  G+ L G       + T +DLL+ + +++G+
Sbjct: 199 PESILLEMEGLAARGFKEITLLGQNIDA-YGRDLPGITAEGRRQHTLTDLLHQVHDVEGI 257

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            RLR+ TSHPR  ++ LI A  DL  +  + H+P QSG + +LK+M R +T   YR+IID
Sbjct: 258 ERLRFATSHPRYFTERLIDACADLPKVCEHFHIPFQSGDNELLKAMARGYTVERYRRIID 317

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           RIR   PD AIS+D IV FPGETD  +R T+ L+++IG+ Q  +  YSPR  TP ++   
Sbjct: 318 RIRKRMPDAAISADVIVAFPGETDAQYRRTLALIEEIGFDQVNTAAYSPRPNTPAADWNN 377

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSVV 439
           Q+ E VK  RL  +   +       N    G+I +VL E  + K+  +L+GR+   +   
Sbjct: 378 QLSEEVKVARLQEINALVESTAKERNARYAGRIEQVLAEGMNPKDPSQLMGRTRTNRLTF 437

Query: 440 LNSK-----NHNIGDIIKVRITDVKISTLYGELVV 469
            +++      H  GD++ VRI  V+  +L G  V+
Sbjct: 438 FSAESPQGITHRAGDLVDVRIDQVRSFSLTGTPVI 472


>gi|260578888|ref|ZP_05846793.1| tRNA-I(6)A37 thiotransferase [Corynebacterium jeikeium ATCC 43734]
 gi|258602978|gb|EEW16250.1| tRNA-I(6)A37 thiotransferase [Corynebacterium jeikeium ATCC 43734]
          Length = 512

 Score =  423 bits (1087), Expect = e-116,   Method: Composition-based stats.
 Identities = 151/469 (32%), Positives = 254/469 (54%), Gaps = 24/469 (5%)

Query: 10  VAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNT 69
              + +Q        + + V+++GCQMNV+DS R+  +    GY   +     D++V NT
Sbjct: 2   TQTIQTQTGKNSGAGRTYEVRTFGCQMNVHDSERLSGLLEDSGYVPASEGVTPDVVVFNT 61

Query: 70  CHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG 129
           C +RE A +++Y  LG+++ +K+        + + V GC+AQ + + ++ ++P V+VV G
Sbjct: 62  CAVRENADKRLYGTLGQMKAIKDEH----PGMQIAVGGCMAQKDKQTVVDKAPWVDVVFG 117

Query: 130 PQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKF 189
                 LP LLER+    +     +   ++F  +        R+     ++++  GC+  
Sbjct: 118 THNLGSLPTLLERSAHNHKAEVEIFDALEEFPSVLPA----KRESAYAGWVSVSVGCNNT 173

Query: 190 CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD----GEKC 245
           CTFC+VP  RG E  R   +++ E + L++ GV E+TLLGQNVNA+     D     ++ 
Sbjct: 174 CTFCIVPSLRGKEQDRRPGEILAEVKALVEQGVSEVTLLGQNVNAYGVNFADETLERDRT 233

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
            FS LL +  EI+GL RLR+T+ HP + +D +I A  +   + P LH+P+QSGS ++LK 
Sbjct: 234 AFSKLLRACGEIEGLERLRFTSPHPAEFTDDVIDAMAETPAVCPQLHMPLQSGSGKVLKD 293

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           M R + + ++  I+D++R   P  AI++D IVGFPGET++DF+AT+D+V+K  ++ AF+F
Sbjct: 294 MKRSYRSKKFLAILDKVRERIPHAAITTDIIVGFPGETEEDFQATLDVVEKARFSSAFTF 353

Query: 366 KYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK 425
           +YSPR GTP + M  QV + V  +R   L           N   +G   E+L++  G++ 
Sbjct: 354 QYSPRPGTPAAEMENQVPKAVVQDRYERLLALQERISEEENRKLIGTTQELLVQADGRKN 413

Query: 426 GKLVGRSP-------WLQSVVL-NSKNHNIGDIIKVRITDVKISTLYGE 466
                R+          + V      +   GD+++V ITD     L  +
Sbjct: 414 D----RTQRRSGRSRDGRLVHFTPEGDVRAGDVVEVVITDAAPHFLIAD 458


>gi|217967463|ref|YP_002352969.1| RNA modification enzyme, MiaB family [Dictyoglomus turgidum DSM
           6724]
 gi|217336562|gb|ACK42355.1| RNA modification enzyme, MiaB family [Dictyoglomus turgidum DSM
           6724]
          Length = 441

 Score =  423 bits (1087), Expect = e-116,   Method: Composition-based stats.
 Identities = 158/447 (35%), Positives = 247/447 (55%), Gaps = 12/447 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           +P ++ + +YGCQMN  DS ++  +  S GY     M++ADLI+LNTC +RE+A EKV+ 
Sbjct: 1   MP-KYHIITYGCQMNKSDSEKVAGILESLGYIPSEKMEEADLILLNTCSVRERAEEKVFG 59

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            LG          K+   LL+ + GC+AQ   EE++ + P V+ V+G   +  LP++LE 
Sbjct: 60  KLGE----LRKLKKKNQKLLIGIFGCMAQRMKEELIEKFPHVDFVLGSYKFTELPKVLES 115

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
                + +      ED  +   +      R+    A++ I  GC+ FCT+C+VPY RG E
Sbjct: 116 LNDNNKKIVL---AEDNPKPEEVDFRIIRRENKFQAWIPIIYGCNNFCTYCIVPYLRGKE 172

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR   +++ E   L + GV E+TLLGQNV+++   G D      +DLL  + +I G+ R
Sbjct: 173 KSRDPQEIIKEIEHLANQGVVEVTLLGQNVDSY---GKDLGNVDLADLLVEIHKIPGIKR 229

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+ TSHPRD+SD LI        + P+ HLP+Q+GSDRIL+ M R +T  EY+ +I++I
Sbjct: 230 IRFLTSHPRDVSDKLINVVATHPKICPHWHLPLQAGSDRILRRMGRGYTYNEYKALIEKI 289

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+  P  + S+D IVGFPGE ++DF AT   +++I +       YS R GTP ++  + V
Sbjct: 290 RAKIPRASFSTDIIVGFPGEEEEDFLATRRALEEIKFDTVNLAIYSKRPGTPAASYDDPV 349

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLN 441
               K +    L+   R+     N + +G+   VL E    K   +L GR+   + V   
Sbjct: 350 PYETKKKWFDELENLQRKIIYERNLSMIGKEELVLAEGVNPKNPKELSGRTENYRLVFFE 409

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
           +    IG  + VRI + ++ +L GE +
Sbjct: 410 ADRKLIGKFLLVRIIEARLWSLRGEAI 436


>gi|299144078|ref|ZP_07037158.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Peptoniphilus sp. oral
           taxon 386 str. F0131]
 gi|298518563|gb|EFI42302.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Peptoniphilus sp. oral
           taxon 386 str. F0131]
          Length = 480

 Score =  422 bits (1086), Expect = e-116,   Method: Composition-based stats.
 Identities = 175/447 (39%), Positives = 269/447 (60%), Gaps = 13/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +R  + ++GCQMN +DS ++E +    GYE +  + D+DL+VLNTC +R  A +KVY  L
Sbjct: 43  KRAKIITHGCQMNEHDSEKIEWILEKMGYEIIQDLADSDLVVLNTCSVRHSAEDKVYGQL 102

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEE--ILRRSPIVNVVVGPQTYYRLPELLER 142
           G    +     K+  +L V V GC+ Q +     ++ +   V+++ G    ++LPELL +
Sbjct: 103 G----VLKHLKKKKNNLKVAVCGCMMQRKESRNYVIDKFENVDIIFGTNNIWKLPELLLK 158

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
                ++      +E+ F  +     G NR     +++ I  GC+ FCTFC+VPYTRG E
Sbjct: 159 NYETNKL---SMDIEENFSGIDDT-LGANRLYPYKSYVNIMYGCNNFCTFCIVPYTRGRE 214

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR    ++ E   L  NG  E+TLLGQNVN+  GK L  +  +F++LLY ++EI G+ R
Sbjct: 215 QSRDPRDIIREIELLAKNGTKEVTLLGQNVNS-YGKNLQ-KPISFANLLYRINEIDGIDR 272

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+ TSHP+D+SD LI A+ DLD L  +LHLPVQSGS RILK MNR+++  +Y + ID+I
Sbjct: 273 IRFMTSHPKDISDELIYAYRDLDKLCNFLHLPVQSGSSRILKLMNRKYSKEDYLKKIDKI 332

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           ++V P+IA+ +D +VGFPGET++DF  T+DLV K+ Y  +F+F YS R GT  +   EQ+
Sbjct: 333 KTVNPNIALCTDLMVGFPGETEEDFMETIDLVKKVQYDTSFTFIYSKREGTFAAKSNEQI 392

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVLN 441
            + +K +R   L   L   Q   N   +G+ ++VL+E   K   + + GR+   + V   
Sbjct: 393 PDKIKHDRFQKLIDVLYPIQFEKNKKNIGRNVKVLVEDVSKNNSENVSGRTEEFKLVNFR 452

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
           +  + IG I+ V+ITD    +L GE++
Sbjct: 453 ADKNKIGKIVNVKITDTNTFSLTGEII 479


>gi|289549019|ref|YP_003474007.1| RNA modification enzyme, MiaB family [Thermocrinis albus DSM 14484]
 gi|289182636|gb|ADC89880.1| RNA modification enzyme, MiaB family [Thermocrinis albus DSM 14484]
          Length = 437

 Score =  422 bits (1086), Expect = e-116,   Method: Composition-based stats.
 Identities = 174/443 (39%), Positives = 275/443 (62%), Gaps = 12/443 (2%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           ++++K++GCQMN  DS R++ +    GY+  ++ ++ADLI++NTC IREK  +KVYS LG
Sbjct: 2   KYYIKTFGCQMNFNDSERIKGILHHMGYKPADTPEEADLILINTCTIREKPDQKVYSHLG 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
             + +K  R     ++++ V GC+AQ  G +++ ++P+V+++      + LPEL+++A+ 
Sbjct: 62  EYKKIKEKR----PEVIIGVCGCLAQRMGWQLVEKAPVVDLMFSSFNIHHLPELIQQAQA 117

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G R +       +  +R+   +    R     A++T+ +GCDK CT+CVVP TRG + SR
Sbjct: 118 GYRAIAILEEPPEDEDRM--WEFKTVRDNAYCAYVTVMKGCDKHCTYCVVPKTRGRQRSR 175

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           SL  +++E R L+ +GV EI LLGQNV AW G+ ++     FS+LLY ++EI G+ R+R+
Sbjct: 176 SLESILEEVRWLVADGVKEIHLLGQNVTAW-GQDIN---IHFSELLYRVAEIPGVERIRF 231

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
           TT HP DM + + KA GD+  +  +LHLPVQSGS+RILK M R +T  EY + I  +R  
Sbjct: 232 TTGHPSDMDERIAKAMGDIPQICEHLHLPVQSGSNRILKLMERNYTKEEYLEKIHMLREY 291

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P I  S+D IVGFP ET++DF  T+D++ K+ + Q FSFKYSPR  TP + M  Q+ + 
Sbjct: 292 VPGITFSTDIIVGFPTETEEDFEETLDVLRKVRFEQVFSFKYSPRPDTPAAYMEGQIPDE 351

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445
           VK +R+  L    +E       +  G + EVL+E    + GKLVGR+   + V +     
Sbjct: 352 VKTDRMSRLLSLQKEILAEIARSYEGTVQEVLLE--SWQDGKLVGRTRTNRWVSVEGSED 409

Query: 446 NIGDIIKVRITDVKISTLYGELV 468
            +G  ++VRIT  +  ++ G ++
Sbjct: 410 MLGKTVRVRITRSQPFSMEGIIL 432


>gi|332654850|ref|ZP_08420592.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Ruminococcaceae bacterium
           D16]
 gi|332516193|gb|EGJ45801.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Ruminococcaceae bacterium
           D16]
          Length = 473

 Score =  422 bits (1086), Expect = e-116,   Method: Composition-based stats.
 Identities = 162/462 (35%), Positives = 251/462 (54%), Gaps = 16/462 (3%)

Query: 12  HMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCH 71
           H V+QI  Q   P   FV +YGCQ N  DS R+       GY      + AD+IV+NTC 
Sbjct: 21  HAVAQINAQRPQPPLAFVDTYGCQQNEADSERIRGYLQEMGYGFTQDEEQADVIVINTCA 80

Query: 72  IREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQ--AEGEEILRRSPIVNVVVG 129
           IRE A ++V   LG + ++K    +     L+ + GC+AQ     +++      V++V G
Sbjct: 81  IREHAEQRVLGNLGALVHVK----RRHPGQLICLCGCMAQEAHVAQKVKESYRHVDLVFG 136

Query: 130 PQTYYRLPELLERARFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
           PQ  +R PE +      + RV  T        E + +V     R+  V A+++I  GC+ 
Sbjct: 137 PQVLWRFPEFIHSLLTARGRVFQTPDLPGSIAEGIPVV-----RQDKVKAWVSIMYGCNN 191

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS 248
           FC++C+VPY RG E SR    ++ E R+L++ G  +ITLLGQNVN+  GK L+     F+
Sbjct: 192 FCSYCIVPYVRGRERSREPQDILAEVRQLVEEGYKDITLLGQNVNS-YGKDLE-NPMDFA 249

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
           DLL  ++EI G   +R+ TSHP+D +  L +     + + P LHLP Q+G+DRILK MNR
Sbjct: 250 DLLAKVNEIPGDFLIRFMTSHPKDATQKLFETMARCEKVAPVLHLPFQAGNDRILKVMNR 309

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
           RHT  +Y + I  ++++ PDI ++SD IVGFPGET ++F  T+ +++++ Y   F+F YS
Sbjct: 310 RHTREQYLEKIRALKALIPDIVLTSDVIVGFPGETTEEFEDTLKVLEEVRYDALFTFIYS 369

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK- 427
           PR+GTP + M + +    K      L     +     + A +G+ +  LI+  G +    
Sbjct: 370 PRVGTPAAKMDDPMPREEKLANFNRLVALQDKISEEKHAAYIGKTVRCLIDGQGDDAEYP 429

Query: 428 LVGRSPWLQSVVLNSKN-HNIGDIIKVRITDVKISTLYGELV 468
              R+P  + V +      ++G   ++ I      +LYGELV
Sbjct: 430 FTARTPGNRLVRVKGGTADDVGQFREIHIIGANKWSLYGELV 471


>gi|254797167|ref|YP_003082007.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Neorickettsia risticii
           str. Illinois]
 gi|254590407|gb|ACT69769.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Neorickettsia risticii
           str. Illinois]
          Length = 454

 Score =  422 bits (1086), Expect = e-116,   Method: Composition-based stats.
 Identities = 214/442 (48%), Positives = 295/442 (66%), Gaps = 10/442 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++F +K+YGCQMNVYDS  +E +    G+      +DADLI+LNTC+IREKAAEK+YS L
Sbjct: 12  KKFHIKTYGCQMNVYDSEMIEKIVGGLGFTLSEKAEDADLIILNTCNIREKAAEKLYSEL 71

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA- 143
           G+IR L+    K+   +L VVAGCVAQAEGEEI+RR+  V+VVVGPQ+ + LPEL+ +  
Sbjct: 72  GQIRLLQK---KKQERILTVVAGCVAQAEGEEIIRRAENVDVVVGPQSIHSLPELIAKVN 128

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           R  ++ +  ++   +KF+ L+  +    +    +AFL+IQEGCDKFC FCVVPYTRG E 
Sbjct: 129 RQSEKAIKIEFDPIEKFDYLA-EETNKRQVPQSSAFLSIQEGCDKFCAFCVVPYTRGAEY 187

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC-TFSDLLYSLSEIKGLVR 262
           SR + +V  EA  L   GV EITLLGQNVN + G    G+       L+  L +I  L R
Sbjct: 188 SRPIEEVYREALSLTTKGVKEITLLGQNVNGYHGALNSGDNVFNLGQLISHLGKIPSLKR 247

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +RYTTSHP DM   L  AH +   LMP++HLPVQSGSD+ILK MNR++T  +Y +II + 
Sbjct: 248 IRYTTSHPVDMHKELYDAHANESKLMPFVHLPVQSGSDKILKKMNRKYTTADYLKIIHKF 307

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           ++ R DIA SSDFIVGFPGE+DDDF+ T+ L++++ YAQ +SFKYSPR GTPG+    Q+
Sbjct: 308 QNARSDIAFSSDFIVGFPGESDDDFQQTLALIEQVNYAQCYSFKYSPRPGTPGAAYP-QI 366

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
            E  K  RL  LQ+ L+E+Q+ FN   +G+ + VL +K  K   K+ GR+ ++Q V  + 
Sbjct: 367 AEETKNTRLQKLQQLLKEKQLEFNKKMIGKTVTVLFDK--KHPDKISGRTEYMQQV-FSY 423

Query: 443 KNHNIGDIIKVRITDVKISTLY 464
            ++ +  I+ +R+ D    TL 
Sbjct: 424 DSNLLDKIVTMRVEDASTFTLK 445


>gi|313888326|ref|ZP_07821997.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Peptoniphilus harei
           ACS-146-V-Sch2b]
 gi|312845729|gb|EFR33119.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Peptoniphilus harei
           ACS-146-V-Sch2b]
          Length = 466

 Score =  422 bits (1086), Expect = e-116,   Method: Composition-based stats.
 Identities = 176/453 (38%), Positives = 278/453 (61%), Gaps = 15/453 (3%)

Query: 18  VDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA 77
           + + +  +R  V ++GCQMN +DS ++  +    GY  VN +D+AD I+LNTC +R  A 
Sbjct: 21  IKESVDEKRALVITHGCQMNEHDSEKITWLLEKMGYSFVNEIDEADFIILNTCSVRHSAE 80

Query: 78  EKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEE--ILRRSPIVNVVVGPQTYYR 135
           +KVY  LG       +   +  ++ + V GC+ Q +     ++ + P V+++ G    ++
Sbjct: 81  DKVYGQLG----NLKNLKSKKKNIKIAVCGCMMQRDESRNYVIEKFPNVDIIFGTNNIWK 136

Query: 136 LPELLERARFG-KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCV 194
           LPELL  +  G K  +D + +     ++L     G NR     +++ I  GC+ FC++C+
Sbjct: 137 LPELLTASYNGTKLAMDIEENALSIDDKL-----GANRLYNFKSYVNIMYGCNNFCSYCI 191

Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL 254
           VPYTRG E SR   +++ E   L  +G  E+TLLGQNVN+  GK LD EK +F++LL  +
Sbjct: 192 VPYTRGRETSRRPGEIIREIEDLARHGTKEVTLLGQNVNS-YGKTLD-EKFSFANLLEEI 249

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
           ++IKG+ R+R+ TSHP+D+SD LI +  +LD L  +LHLPVQ+GS R+LK MNR++T  +
Sbjct: 250 NDIKGIERIRFMTSHPKDISDELIYSFKNLDKLCNFLHLPVQAGSSRVLKMMNRKYTRED 309

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
           Y + ID+++S+ P+IA+S+D +VGFPGE+++DF  T+DLV K+ Y  AF+F YS R  TP
Sbjct: 310 YLRKIDKVKSLNPNIALSTDIMVGFPGESEEDFLDTLDLVKKVEYDTAFTFIYSVRENTP 369

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSP 433
            +N  +QV + VK +R   L   L   Q   N A +G+ ++VL+E   K+   K+ GR+ 
Sbjct: 370 AANRTDQVPDKVKHDRFERLLDVLYPIQERKNKAFIGKDVDVLVEDISKKNESKVSGRTD 429

Query: 434 WLQSVVLNSKNHNIGDIIKVRITDVKISTLYGE 466
             + V      +++G+I+KVRI D    +L GE
Sbjct: 430 EFKLVNFKGDKNDVGNIVKVRIKDANSFSLVGE 462


>gi|281357828|ref|ZP_06244314.1| RNA modification enzyme, MiaB family [Victivallis vadensis ATCC
           BAA-548]
 gi|281315775|gb|EFA99802.1| RNA modification enzyme, MiaB family [Victivallis vadensis ATCC
           BAA-548]
          Length = 446

 Score =  422 bits (1086), Expect = e-116,   Method: Composition-based stats.
 Identities = 156/450 (34%), Positives = 245/450 (54%), Gaps = 12/450 (2%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + F+K+YGCQMN  DS     M    G+  V+S + AD+++ NTC +RE+A  K    +G
Sbjct: 2   KIFIKTYGCQMNERDSEAFAGMLVEAGHTMVDSEEQADVLLFNTCSVREQAERKAIGKIG 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            ++ LK        +L++   GC+AQ  G ++L+  P ++ V+G    + L  L+E  R 
Sbjct: 62  FMKKLKAKH----PELIIGAMGCMAQRLGNDLLKELPHLDFVLGTGQLHTLVPLIESIRA 117

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            +R V +    E     +          R   A + I  GC++FC++C+VPY RG EISR
Sbjct: 118 DRRQVASLNESEAVLTGMGSHYRPAGDVRNWHAQIAITRGCNRFCSYCIVPYVRGREISR 177

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC-----TFSDLLYSLSEIKGL 260
               VV EAR+L+  G  E+ LLGQNV A  G G +          F++LL  L  I  L
Sbjct: 178 DPGDVVREARELVAAGARELMLLGQNVAA-YGLGGNTNPPEDGSSPFAELLEELDRIPEL 236

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
           +R+R+T+ +P   +  LI A      +   +HLP+QSGSDR+LK+MNR++T   Y ++++
Sbjct: 237 LRIRFTSPYPTYFNGRLIDAIAKSRTVCHNIHLPLQSGSDRMLKAMNRQYTHDSYLEVVN 296

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           RIR+  PD+  S+D IVGFPGETD DF+ T ++++ +G+  +F FKYSPR G   + + +
Sbjct: 297 RIRAAMPDVTFSTDVIVGFPGETDGDFKQTREVMNTVGFDNSFIFKYSPRPGARSAALAD 356

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVV 439
            V + VK ER   L   L+ +  +F    +G   E+L+E    +   +  GR+   + + 
Sbjct: 357 SVPQEVKEERNQILLNDLKLRVEAFLKQQIGTTQEILVEGVSPRNPARWCGRTGTNRLIH 416

Query: 440 LNSKNHN-IGDIIKVRITDVKISTLYGELV 468
              +     G +  V +T     +L+GELV
Sbjct: 417 FEPEEGLQAGTLRSVTVTRAGSVSLFGELV 446


>gi|318060989|ref|ZP_07979710.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Streptomyces
           sp. SA3_actG]
 gi|318077279|ref|ZP_07984611.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Streptomyces
           sp. SA3_actF]
          Length = 484

 Score =  422 bits (1086), Expect = e-116,   Method: Composition-based stats.
 Identities = 166/441 (37%), Positives = 246/441 (55%), Gaps = 21/441 (4%)

Query: 36  MNVYDSLRMEDMFFSQGYERVNSMDD---ADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92
           MNV+DS R+  +    GY R     +   AD++V NTC +RE A  ++Y  LGR+   K 
Sbjct: 1   MNVHDSERLAGLLEGAGYVRAPEGAEDGGADVVVFNTCAVRENADNRLYGNLGRLAPKKT 60

Query: 93  SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV-VD 151
            R      + + V GC+AQ + + I+ R+P V+VV G     +LP LLERAR  +   V+
Sbjct: 61  ER----PGMQIAVGGCLAQKDRQTIVDRAPWVDVVFGTHNIGKLPVLLERARVQEEAQVE 116

Query: 152 TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVV 211
              S+E     L        R+    A++++  GC+  CTFC+VP  RG E  R    ++
Sbjct: 117 IAESLEAFPSTLPT-----RRESAYAAWVSVSVGCNNTCTFCIVPALRGKEKDRRPGDIL 171

Query: 212 DEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPR 271
            E   L+  GV EITLLGQNVNA  G  + G++  FS LL +   I+GL R+R+T+ HPR
Sbjct: 172 AEVEALVAEGVSEITLLGQNVNA-YGSDI-GDREAFSKLLRACGGIEGLERVRFTSPHPR 229

Query: 272 DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAI 331
           D +D +I A  +   +MP LH+P+QSGSD +L++M R +    Y  II+++R+  PD AI
Sbjct: 230 DFTDDVIAAMAETPNVMPQLHMPLQSGSDTVLRAMRRSYRQDRYLGIIEKVRAAIPDAAI 289

Query: 332 SSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERL 391
           S+D IVGFPGET++DF  T+ +V +  +A AF+F+YS R GTP + M  Q+ + V  +R 
Sbjct: 290 STDIIVGFPGETEEDFEQTLHVVREARFAAAFTFQYSKRPGTPAAEMENQIPKEVVQKRY 349

Query: 392 LCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKG---KLVGRSPWLQSVVL--NSKNH 445
             L     E     N   VG+ ++V++ E  G++ G   +L GR+P  + V      +  
Sbjct: 350 ERLVALQEEISWEENKKQVGRTLDVMVAEGEGRKDGATQRLSGRAPDNRLVHFTKPQEPV 409

Query: 446 NIGDIIKVRITDVKISTLYGE 466
             GD++ V IT      L  E
Sbjct: 410 RPGDVVTVDITYAAPHHLLAE 430


>gi|291388708|ref|XP_002710877.1| PREDICTED: CDK5 regulatory subunit associated protein 1
           [Oryctolagus cuniculus]
          Length = 588

 Score =  422 bits (1086), Expect = e-116,   Method: Composition-based stats.
 Identities = 156/476 (32%), Positives = 253/476 (53%), Gaps = 38/476 (7%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ ++++YGCQMNV D+     +    GY R + + +AD+I+L TC IREKA + +++ L
Sbjct: 101 RKVYLETYGCQMNVNDTEIAWSILQKSGYLRTSDLQEADVILLVTCSIREKAEQTIWNRL 160

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            +++ LK  R++  G L + + GC+A+   EEIL R  +V+++ GP  Y  LP LL    
Sbjct: 161 RQLKALKTKRLRSRGPLRIGILGCMAERLKEEILNREKMVDLLAGPDAYRDLPRLLAVTE 220

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G++  +   S+++ +  +  V          +AF++I  GCD  C++C+VP+TRG E S
Sbjct: 221 SGQQAANVLLSLDETYADVMPVQAS---PGATSAFVSIMRGCDNMCSYCIVPFTRGRERS 277

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG---------------KGLDGEKCT--- 246
           R ++ +++E R+L + G+ E+TLLGQNVN++R                +G      T   
Sbjct: 278 RPVASILEEVRQLSEQGLKEVTLLGQNVNSFRDNSEIQFNNAVPTNLSRGFTTNYKTKQG 337

Query: 247 ---FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
              F+ LL  +S I   +R+R+T+ HP+D  D +++  G+ D +   +HLP QSGS R+L
Sbjct: 338 GLRFAHLLDQVSRIDPEMRIRFTSPHPKDFPDEVLQLIGERDNICKQIHLPAQSGSSRVL 397

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           ++M R ++   Y +++  IR   P +++SSDFI GF GET++D   T+ L+ ++ Y   F
Sbjct: 398 EAMRRGYSREAYVELVHHIRESIPGVSLSSDFIAGFCGETEEDHLQTVSLLREVRYNIGF 457

Query: 364 SFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422
            F YS R  T     + + V E VK  RL  L    RE+    N + VG+   VL+E   
Sbjct: 458 LFAYSMRQKTRAYHRLKDDVPEEVKLRRLEELITVFREEATKVNRSSVGRTELVLVEGLS 517

Query: 423 KEK-GKLVGRSPWLQSVVLNSKN------------HNIGDIIKVRITDVKISTLYG 465
           K     L GR+     V+                    GD + V+IT     TL G
Sbjct: 518 KRSASDLCGRNDGNLKVIFPDVEMEDVASPGLRVRAQPGDYVLVKITSASSQTLKG 573


>gi|111225071|ref|YP_715865.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Frankia alni
           ACN14a]
 gi|123142677|sp|Q0RDX2|MIAB_FRAAA RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|111152603|emb|CAJ64344.1| Putative 2-methylthioadenine synthetase [Frankia alni ACN14a]
          Length = 497

 Score =  422 bits (1086), Expect = e-116,   Method: Composition-based stats.
 Identities = 165/452 (36%), Positives = 248/452 (54%), Gaps = 17/452 (3%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           +  + + V+++GCQMNV+DS R+  +  S GY       +AD++V NTC +RE A  ++Y
Sbjct: 1   MTGRSYEVRTFGCQMNVHDSERLSGLLESAGYVPAPPGSEADVVVFNTCAVRENADNRLY 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LG++  +K    K    + + V GC+AQ +   IL R+P V+VV G    +RLP LLE
Sbjct: 61  GNLGQLVPVK----KGHPGMQIAVGGCLAQKDRSTILDRAPWVDVVFGTHNLHRLPVLLE 116

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           RAR             + F           R    +A+++I  GCD  CTFC+VP  RG 
Sbjct: 117 RARHNAAAELEIAEALEVFPSSLPTR----RASHHSAWVSISVGCDNTCTFCIVPSLRGR 172

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E  R    V+ E   L+  G  EITLLGQNVN+  G+ L G+   F+ LL +   + GL 
Sbjct: 173 ERDRRPGDVLAEVEALVGEGALEITLLGQNVNS-YGRSL-GDPGAFAKLLLACGRVDGLE 230

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+T+ HPRD +D +I+A      +   LH+P+QSGSD +L+ M R +    +  I++R
Sbjct: 231 RVRFTSPHPRDFTDDVIEAMAATPNVCHQLHMPLQSGSDDVLRRMRRSYRRDRFLGIVER 290

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R+  PD AI++D IVGFPGET+ DF  T+D+V +  +A AF+F+YSPR GTP + M  Q
Sbjct: 291 VRAAMPDAAITTDIIVGFPGETEADFADTLDVVRQARFAGAFTFQYSPRPGTPAATMDGQ 350

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEK---GKLVGRSPWLQS 437
           +D    AER   L     E   + N   VG+ +E+L+ E  G++    G+L GR+   + 
Sbjct: 351 IDRTTVAERYARLVALQDEVSWAQNRELVGRRVELLVAEGEGRKDDATGRLSGRARDGRL 410

Query: 438 VVLNSK---NHNIGDIIKVRITDVKISTLYGE 466
           V   +        GD+++  +T      L  +
Sbjct: 411 VHFRAGAGLAARPGDVVETVVTRAAPHHLTAD 442


>gi|319952447|ref|YP_004163714.1| tRNA-i(6)a37 thiotransferase enzyme miab [Cellulophaga algicola DSM
           14237]
 gi|319421107|gb|ADV48216.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Cellulophaga algicola DSM
           14237]
          Length = 480

 Score =  422 bits (1086), Expect = e-116,   Method: Composition-based stats.
 Identities = 170/459 (37%), Positives = 259/459 (56%), Gaps = 22/459 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ +++SYGC MN  DS  +  +   +G+     +++ADL+++NTC IREKA   V   L
Sbjct: 24  RKLYIESYGCAMNFSDSEVVASILAKEGFNTTQILEEADLVLVNTCSIREKAELTVRKRL 83

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            +   +K    K    + V V GC+A+    + L    IV++VVGP  Y  LP L++   
Sbjct: 84  EKFNAVK----KTRPHMKVGVLGCMAERLKSKFLEEEKIVDMVVGPDAYKDLPNLIKEID 139

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G+  V+   S ++ +  +S V        GV+AF++I  GCD  CTFCVVP+TRG E S
Sbjct: 140 EGRDAVNVILSKDETYGDISPVRLQ---TNGVSAFVSITRGCDNMCTFCVVPFTRGRERS 196

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNA--WRGKGL--------DGEKCT---FSDLL 251
           R    ++ E + L D+   E+TLLGQNV++  W G GL        D +K T   FS LL
Sbjct: 197 REPQSILKEIQDLHDSNFKEVTLLGQNVDSYLWYGGGLKKEFEKATDMQKATAVNFSSLL 256

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
            ++++    +R+R++TS+P+DM+  +I+       +  ++HLPVQSGS+RILK MNR HT
Sbjct: 257 DTVAKKFPKMRIRFSTSNPQDMTLDVIETVAKHKNICNHIHLPVQSGSNRILKEMNRLHT 316

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
             EY  +ID IR + PD AIS D I GFP ET++D +AT+D++ ++ Y   + + YS R 
Sbjct: 317 IEEYITLIDNIRRILPDCAISQDMISGFPTETEEDHQATIDVLKRVQYDFGYMYSYSERP 376

Query: 372 GTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LV 429
           GT  +  + + V E  K  RL  +    RE         +G+  EVLIE   K+  +  +
Sbjct: 377 GTMAARKLEDDVPEETKKRRLAEIIAVQRENGHIKTREHLGKTEEVLIEGSSKKSDQDWM 436

Query: 430 GRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           GR+     V+    N+ IGD++ V+ITD   +TL GE +
Sbjct: 437 GRNSQNAVVIFAKGNYKIGDLVHVKITDCTSATLLGEAI 475


>gi|333024041|ref|ZP_08452105.1| putative tRNA-I(6)A37 thiotransferase enzyme MiaB [Streptomyces sp.
           Tu6071]
 gi|332743893|gb|EGJ74334.1| putative tRNA-I(6)A37 thiotransferase enzyme MiaB [Streptomyces sp.
           Tu6071]
          Length = 484

 Score =  422 bits (1085), Expect = e-116,   Method: Composition-based stats.
 Identities = 166/441 (37%), Positives = 246/441 (55%), Gaps = 21/441 (4%)

Query: 36  MNVYDSLRMEDMFFSQGYERVNSMDD---ADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92
           MNV+DS R+  +    GY R     +   AD++V NTC +RE A  ++Y  LGR+   K 
Sbjct: 1   MNVHDSERLAGLLEGAGYVRAPEGAEDGGADVVVFNTCAVRENADNRLYGNLGRLAPKKT 60

Query: 93  SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV-VD 151
            R      + + V GC+AQ + + I+ R+P V+VV G     +LP LLERAR  +   V+
Sbjct: 61  ER----PGMQIAVGGCLAQKDRQTIVDRAPWVDVVFGTHNIGKLPVLLERARVQEEAQVE 116

Query: 152 TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVV 211
              S+E     L        R+    A++++  GC+  CTFC+VP  RG E  R    ++
Sbjct: 117 IAESLEAFPSTLPT-----RRESAYAAWVSVSVGCNNTCTFCIVPALRGKEKDRRPGDIL 171

Query: 212 DEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPR 271
            E   L+  GV EITLLGQNVNA  G  + G++  FS LL +   I+GL R+R+T+ HPR
Sbjct: 172 AEVEALVAEGVSEITLLGQNVNA-YGSDI-GDREAFSKLLRACGGIEGLERVRFTSPHPR 229

Query: 272 DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAI 331
           D +D +I A  +   +MP LH+P+QSGSD +L++M R +    Y  II+++R+  PD AI
Sbjct: 230 DFTDDVIAAMAETPNVMPQLHMPLQSGSDTVLRAMRRSYRQDRYLGIIEKVRAAIPDAAI 289

Query: 332 SSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERL 391
           S+D IVGFPGET++DF  T+ +V +  +A AF+F+YS R GTP + M  Q+ + V  +R 
Sbjct: 290 STDIIVGFPGETEEDFEQTLHVVREARFAAAFTFQYSKRPGTPAAEMENQIPKEVVQKRY 349

Query: 392 LCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKG---KLVGRSPWLQSVVL--NSKNH 445
             L     E     N   VG+ ++V++ E  G++ G   +L GR+P  + V      +  
Sbjct: 350 ERLVALQEEISWEENKKLVGRTLDVMVAEGEGRKDGATQRLSGRAPDNRLVHFTKPQEPV 409

Query: 446 NIGDIIKVRITDVKISTLYGE 466
             GD++ V IT      L  E
Sbjct: 410 RPGDVVTVDITYAAPHHLLAE 430


>gi|213019557|ref|ZP_03335363.1| trna-i(6)a37 thiotransferase enzyme [Wolbachia endosymbiont of
           Culex quinquefasciatus JHB]
 gi|212994979|gb|EEB55621.1| trna-i(6)a37 thiotransferase enzyme [Wolbachia endosymbiont of
           Culex quinquefasciatus JHB]
          Length = 428

 Score =  422 bits (1085), Expect = e-116,   Method: Composition-based stats.
 Identities = 226/433 (52%), Positives = 308/433 (71%), Gaps = 11/433 (2%)

Query: 36  MNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRI 95
           MNVYDS+ ME++    G+  V+  + ADL++LNTCHIREKAAEK+YS LGRI + +    
Sbjct: 1   MNVYDSILMENIVKPLGFNVVSDAEQADLVILNTCHIREKAAEKLYSELGRIHSSQK--- 57

Query: 96  KEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK-RVVDTDY 154
               ++ +VVAGCVAQAEGEE+ RR+P V++VVGPQ+   LPEL+ +A   K  V++TD+
Sbjct: 58  --NKEMTIVVAGCVAQAEGEEVFRRAPFVDIVVGPQSIPALPELIVKASRSKGHVINTDF 115

Query: 155 SVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEA 214
               KF++L   D  Y   +G +AFL IQEGCDKFCTFCVVPYTRG E SR ++++  EA
Sbjct: 116 PEVAKFDKLP--DECYGNSQGSSAFLAIQEGCDKFCTFCVVPYTRGAEYSRPVNEIFREA 173

Query: 215 RKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMS 274
             L+ NG  EITLLGQNVNA+ G+  +GE      L+  +++I+ L R+RYTTSHPRDM 
Sbjct: 174 LNLVKNGAKEITLLGQNVNAYHGE-CEGEVWDLGKLISHIAKIEKLERIRYTTSHPRDMH 232

Query: 275 DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSD 334
           + L   H +   LMP++HLPVQSGS++IL +MNR+HTA EY  IIDR+R ++P+I  SSD
Sbjct: 233 ESLYLVHAEESKLMPFVHLPVQSGSNKILHAMNRKHTAEEYLGIIDRLRKLKPEIEFSSD 292

Query: 335 FIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCL 394
           FIVGFPGET+ DF  TM LV+K+ YAQA+SFKYSPR GTPG+   +QV E VK ERLL L
Sbjct: 293 FIVGFPGETEKDFEETMKLVEKVKYAQAYSFKYSPRPGTPGAERKDQVPEEVKTERLLRL 352

Query: 395 QKKLREQQVSFNDACVGQIIEVLI-EKHGKEKGKLVGRSPWLQSV-VLNSKNHNIGDIIK 452
           Q+ + +QQ+ FN + +G+ I VL  +K GK + +++G+SP++QSV V +  +     I+ 
Sbjct: 353 QELISKQQLEFNQSMIGKTIPVLFSDKKGKHQNQIIGKSPYMQSVCVDDPDDKYKDKIVN 412

Query: 453 VRITDVKISTLYG 465
           VRI + + ++L G
Sbjct: 413 VRILEARQNSLLG 425


>gi|291550415|emb|CBL26677.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Ruminococcus torques
           L2-14]
          Length = 482

 Score =  422 bits (1085), Expect = e-116,   Method: Composition-based stats.
 Identities = 157/457 (34%), Positives = 249/457 (54%), Gaps = 13/457 (2%)

Query: 14  VSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIR 73
           V+++ ++   P    V ++GCQMN  DS ++  +    GY      + AD ++ NTC +R
Sbjct: 33  VAEMSEKLGRPLTACVTTFGCQMNSRDSEKLLGILEKVGYAEETDEEKADFVIYNTCTVR 92

Query: 74  EKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQ 131
           E A  +VY  LG++ ++K    K+    ++ + GC+ Q     E++ +    V+++ G  
Sbjct: 93  ENANLRVYGRLGQLGSIK----KKNPHKMIALCGCMMQEPEVVEKLKKSYRFVDLIFGTH 148

Query: 132 TYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCT 191
             Y+  ELL  A    R V   +   DK     + D    RK    + + I  GC+ FC+
Sbjct: 149 NIYKFAELLTSAIQSDRTVIDIWKDTDKI----VEDLPVERKYPFKSGVNIMFGCNNFCS 204

Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLL 251
           +C+VPY RG E SR    ++ E  +L+ +GV E+ LLGQNVN+  GK L+ E  TF+ LL
Sbjct: 205 YCIVPYVRGRERSREPKAIIREIERLVADGVVEVMLLGQNVNS-YGKNLE-EPMTFAQLL 262

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
             + +I+GL R+R+ TSHP+D+SD LI+       +  +LHLPVQSGS RILK MNR + 
Sbjct: 263 QEIEKIEGLERIRFMTSHPKDLSDELIEVMSKSKKICKHLHLPVQSGSSRILKLMNRHYD 322

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
             +Y  + ++IR   PD+++++D IVGFPGET++DF+ T+D+V K+ Y  AF+F YS R 
Sbjct: 323 KEQYLALAEKIRKAVPDLSLTTDIIVGFPGETEEDFQETLDVVRKVRYDSAFTFIYSKRT 382

Query: 372 GTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-G 430
           GTP + M +Q+ E+V  +R   L  +++           G +  VL+E   +    L+ G
Sbjct: 383 GTPAAVMEDQIPEDVVKDRFNRLLHEVQTISAEQCAIHEGTVQTVLVECVNEHDHHLMTG 442

Query: 431 RSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
           R      V        IG ++ V + + K     G +
Sbjct: 443 RMSNNLLVHFPGDESLIGQLVDVHLDECKGFYYMGRI 479


>gi|166030899|ref|ZP_02233728.1| hypothetical protein DORFOR_00579 [Dorea formicigenerans ATCC
           27755]
 gi|166029166|gb|EDR47923.1| hypothetical protein DORFOR_00579 [Dorea formicigenerans ATCC
           27755]
          Length = 440

 Score =  422 bits (1085), Expect = e-116,   Method: Composition-based stats.
 Identities = 145/448 (32%), Positives = 229/448 (51%), Gaps = 16/448 (3%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
               S GC  N+ DS  M  +   +GY+ V+S +DAD+IV+NTC     A E+    +  
Sbjct: 3   ILFISLGCDKNLVDSEVMLGLLDKKGYQIVDSEEDADIIVVNTCCFIHDAKEESIQTILE 62

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           +   K    KEG    ++V GC+AQ   +EI+   P V+ V+G  +Y  + E +E A  G
Sbjct: 63  MAEYK----KEGKLKALIVTGCLAQRYQQEIIDEIPEVDAVLGTTSYDHIVEAVEEALAG 118

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
              V     +ED      + +       G  A++ I EGCDK CT+C++P  RG   S  
Sbjct: 119 NGHV----VLEDVDALPDVKEKRLVTTGGHYAYMKIAEGCDKHCTYCIIPKLRGNYRSVP 174

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
           + +++ EA+ L D GV E+ L+ Q      GK L GEK +   LL  L +I G+  +R  
Sbjct: 175 MEKLLAEAKDLADQGVKELILVAQETT-VYGKDLYGEK-SLHKLLRELCKISGIQWIRIL 232

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
             +P ++ D LI+   + + +  YL LP+Q  SD +LK M RR +  +  +II+++R   
Sbjct: 233 YCYPEEIYDELIQTIKEENKVCHYLDLPIQHASDAVLKRMGRRTSKAQLVEIIEKLRKEI 292

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           PDI++ +  I GFPGET +      D VD++ + +   F YSP   TP + M EQ+ E V
Sbjct: 293 PDISLRTTLITGFPGETQEQHEELKDFVDEMEFDRLGVFTYSPEEDTPAATMTEQIPEEV 352

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVLNS 442
           K +R   L +  +E      +  VG+ + V+IE    ++   VGR+    P +  ++  +
Sbjct: 353 KEDRQAELMELQQEIAFDLAEDMVGREVLVMIEGKVADENAYVGRTYKDAPNVDGLIFIN 412

Query: 443 KNHNI--GDIIKVRITDVKISTLYGELV 468
            +  +  GD  +VR+T      L GEL+
Sbjct: 413 TDEELMSGDFARVRVTGALEYDLIGELI 440


>gi|317498496|ref|ZP_07956790.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Lachnospiraceae bacterium
           5_1_63FAA]
 gi|291559009|emb|CBL37809.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [butyrate-producing
           bacterium SSC/2]
 gi|316894189|gb|EFV16377.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Lachnospiraceae bacterium
           5_1_63FAA]
          Length = 470

 Score =  422 bits (1085), Expect = e-116,   Method: Composition-based stats.
 Identities = 155/445 (34%), Positives = 252/445 (56%), Gaps = 16/445 (3%)

Query: 28  FVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRI 87
            V ++GCQMN  DS ++  +  + GYE V + ++AD ++ NTC +RE A  K+Y  LG++
Sbjct: 36  HVTTFGCQMNEKDSEKLLGILETIGYEEVET-EEADFLIFNTCTVRENANTKLYGHLGQV 94

Query: 88  RNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLE-RAR 144
           + +K         +++ + GC+ Q E   E+I      V+++ G    ++L ELL+ R  
Sbjct: 95  KKMKER----NPQMMIGLCGCMMQEEHVIEKIRSSYKFVDIIFGTHNIFKLAELLKARVD 150

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
               +VD     +   E L       +RK      + I  GC+ FC++C+VPY RG E S
Sbjct: 151 SKGMIVDIWKDTDQIVEDLP-----SDRKFSFKCGVNIMYGCNNFCSYCIVPYVRGRERS 205

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R    ++ E ++++  GV E+ LLGQNVN+  GK L+ E  +F++LL  + +++GL R+R
Sbjct: 206 RKPEDIIKEVKQVVSEGVKEVMLLGQNVNS-YGKTLE-EPMSFAELLREVEKVEGLERIR 263

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           + T HP+D+SD LI+       +  ++HLP+QSGS R+LK MNR +T  +Y  +  +I+ 
Sbjct: 264 FMTPHPKDLSDDLIEVMATSKKVCKHMHLPMQSGSSRLLKLMNRHYTKEQYVALAKKIQE 323

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             P ++ ++D IVGFPGET++DF+ T+D+V ++G+  A+++ YS R GTP ++M +QVD+
Sbjct: 324 RIPGVSFTTDIIVGFPGETEEDFKETLDVVREVGFDSAYTYVYSKRSGTPAASMEDQVDK 383

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLNSK 443
           +V  +R   L   L+E         VG I  VLIE+    E+G L GR      V     
Sbjct: 384 DVIKDRFDRLLALLKETSAKNCKKKVGDIERVLIEEENTHEEGMLTGRLENNLLVHFKGC 443

Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468
              IG +  V++ + K     GE +
Sbjct: 444 KEQIGTMADVKLVEEKGFYYMGEQI 468


>gi|256375581|ref|YP_003099241.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Actinosynnema
           mirum DSM 43827]
 gi|255919884|gb|ACU35395.1| RNA modification enzyme, MiaB family [Actinosynnema mirum DSM
           43827]
          Length = 491

 Score =  422 bits (1084), Expect = e-116,   Method: Composition-based stats.
 Identities = 162/453 (35%), Positives = 257/453 (56%), Gaps = 18/453 (3%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P++F ++++GCQMNV+DS R+  M  + GY   +  + AD++V NTC +RE A  K+Y  
Sbjct: 4   PKKFEIRTFGCQMNVHDSERLAGMLEAAGYAAASGGESADVVVFNTCAVRENADNKLYGT 63

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LG +   K +      D+ + V GC+AQ +   I++R+P V+VV G      LP LLERA
Sbjct: 64  LGHLAPAKAA----NPDMQIAVGGCLAQKDQAAIVKRAPWVDVVFGTHNIGSLPVLLERA 119

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           R  +          + F           R    + ++++  GC+  CTFC+VP  RG E 
Sbjct: 120 RHNREAQVEILDSLETFPSTLPAR----RDSAYSGWVSVSVGCNNTCTFCIVPSLRGKEK 175

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
            R   +V+ E + L+  GV E+TLLGQNVN++  +   G++  F  LL +  +++GL R+
Sbjct: 176 DRRPGEVLAEVQALVAEGVLEVTLLGQNVNSYGVEF--GDRYAFGKLLRACGDVEGLERV 233

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+T+ HP+D +D +I A  +   +   LH+P+QSGSDR+LK M R +    Y  I++ +R
Sbjct: 234 RFTSPHPKDFTDDVIAAMAETPNVCHQLHMPLQSGSDRVLKEMRRSYRTGRYLSILENVR 293

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           +  PD AI++D IVGFPGET+ DF+AT+D+V +  ++ AF+F+YS R GTP + + +Q+ 
Sbjct: 294 AAMPDAAITTDIIVGFPGETEADFQATLDVVREARFSSAFTFQYSKRPGTPAAELPDQLP 353

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI---EK-HGKEKGKLVGRSPWLQSVV 439
           + V  ER   L   + E   + N A VG+++EVL    E     E  ++ GR+   + V 
Sbjct: 354 KQVVQERYDRLVTLVNELAWAENKAQVGRVVEVLASAGEGRKDTETNRMSGRARDGKLVH 413

Query: 440 LNSKNHNI--GDIIKVRITDVKISTLY--GELV 468
               +  +  GD+++  IT      L   GEL+
Sbjct: 414 FTPGDARVRPGDVVETAITYGAPHNLIADGELI 446


>gi|304440470|ref|ZP_07400359.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Peptoniphilus duerdenii
           ATCC BAA-1640]
 gi|304371222|gb|EFM24839.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Peptoniphilus duerdenii
           ATCC BAA-1640]
          Length = 476

 Score =  422 bits (1084), Expect = e-116,   Method: Composition-based stats.
 Identities = 174/466 (37%), Positives = 275/466 (59%), Gaps = 18/466 (3%)

Query: 7   LIGVAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIV 66
           +  +  +  +  ++    +  +++++GCQMN +DS +++ +     +   +   ++DL +
Sbjct: 22  VNEIKQLNREFFEKNGRKRTAYIETFGCQMNEHDSEKIDWLLRQMDFYMSDR--NSDLYI 79

Query: 67  LNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAE--GEEILRRSPIV 124
           +NTC IR+ A +KVY  LG ++  K    +E  +LLV V GC+ Q +   + +L + P V
Sbjct: 80  INTCSIRKNAEDKVYGRLGELKGKK----RENENLLVAVCGCMMQRKESRDIVLEKFPNV 135

Query: 125 NVVVGPQTYYRLPELL-ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQ 183
           +++ G    Y+ P+LL ER   G R VD + +  ++   L     G NR     +F+ I 
Sbjct: 136 DMIFGTNNIYKFPKLLLERLENGVRAVDIEENYSNEDNLL-----GANRMYSFKSFVNIM 190

Query: 184 EGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
            GC+ FCT+C+VPYTRG E SR    +V+E + L  +GV E+TLLGQNVN+  GK L   
Sbjct: 191 YGCNNFCTYCIVPYTRGREKSRRPMDIVNEIKGLASHGVKEVTLLGQNVNS-YGKSLS-N 248

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
             +F DLL  ++EI G+ R+R+ TSHPRD S  L  A+ DLD L  +LHLPVQ+GS ++L
Sbjct: 249 NVSFVDLLKMVNEIDGIERIRFMTSHPRDFSKELAYAYRDLDKLKNFLHLPVQAGSSKVL 308

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           + MNR +T  EY + ID ++ + P+IA+S+D +VGFP ET++DF+ T+DL   + Y  +F
Sbjct: 309 RDMNRHYTKEEYIRKIDMVKEIVPEIALSTDLMVGFPTETEEDFKDTLDLCKYVEYDTSF 368

Query: 364 SFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK 423
           +F YS R GT    M +QV E +K +R   L   +   Q+  N+  +G++ +VL+E   K
Sbjct: 369 TFIYSMREGTKAYEM-DQVPEEIKHDRFNRLLDLIYPIQLKKNENEIGKVRKVLVESTSK 427

Query: 424 -EKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            ++ KL GR+   + V  +     IG I+ V ITD    +L G+LV
Sbjct: 428 SDENKLSGRTDEFKLVNFDGPKDLIGKIVDVNITDANTFSLKGDLV 473


>gi|255036486|ref|YP_003087107.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Dyadobacter
           fermentans DSM 18053]
 gi|254949242|gb|ACT93942.1| RNA modification enzyme, MiaB family [Dyadobacter fermentans DSM
           18053]
          Length = 489

 Score =  422 bits (1084), Expect = e-116,   Method: Composition-based stats.
 Identities = 166/456 (36%), Positives = 252/456 (55%), Gaps = 18/456 (3%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
            +R F++SYGCQMN  DS  +  +    G+   + ++DADLI LNTC IR+ A +KV + 
Sbjct: 34  KKRLFIESYGCQMNFSDSEIVASVMRDAGFATTSDVNDADLIFLNTCAIRDNAEQKVRNR 93

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           L ++  LK    K    +L+ V GC+A+    + L    +V++V GP  Y  LP L++ A
Sbjct: 94  LKQLNFLK----KNKPGMLIGVLGCMAERLKTKFLEEEKMVDIVTGPDAYRDLPRLVDEA 149

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             G++ V+   S E+ +  +S +        GVTAF++I  GCD  C+FCVVP+TRG E 
Sbjct: 150 ETGQKGVNVFLSREETYADISPIRLN---SNGVTAFISIMRGCDNMCSFCVVPFTRGRER 206

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-------GLDGEKC-TFSDLLYSLS 255
           SR    +V EA  L  +G  E+TLLGQNV++++ K       GL GE    F+ LL  ++
Sbjct: 207 SRDPYSIVKEAEDLFRDGYREVTLLGQNVDSYKWKPEATAEGGLTGETIVNFAHLLEMVA 266

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
           ++   +R+R++TSHP+D++D ++      D +  Y+HLP QSG+ R+L+ MNR +T   Y
Sbjct: 267 KVSPELRIRFSTSHPKDITDEVLYTMKKYDNICKYIHLPAQSGNTRVLEIMNRTYTREWY 326

Query: 316 RQIIDRIRSVRPD-IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
            + ID IR +  D   IS D I GF  ET+++ R T+ L++   +   F F YS R GT 
Sbjct: 327 MERIDAIRRILGDECGISQDMIAGFCTETEEEHRDTLSLMEYAKFDFGFMFAYSERPGTL 386

Query: 375 GS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRS 432
            +    + + E+VK  RL  + +  +   ++ N   VG I  VLIE   K     L GR+
Sbjct: 387 AAKKFKDDIPEDVKKRRLAEIIEVQQRLSLARNQQLVGTIQRVLIEGTSKRSDDDLSGRN 446

Query: 433 PWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
              + VV   +N   G  + V IT+    TL G +V
Sbjct: 447 DQNKKVVFPRENFEKGQYVDVLITECTTVTLLGHVV 482


>gi|308176878|ref|YP_003916284.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Arthrobacter arilaitensis
           Re117]
 gi|307744341|emb|CBT75313.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Arthrobacter arilaitensis
           Re117]
          Length = 509

 Score =  422 bits (1084), Expect = e-116,   Method: Composition-based stats.
 Identities = 158/452 (34%), Positives = 256/452 (56%), Gaps = 21/452 (4%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSM---DDADLIVLNTCHIREKAAEKV 80
           P+ + V+++GCQMNV+DS R+  +  + G  R       + AD++V NTC +RE A  K+
Sbjct: 16  PRTYEVRTFGCQMNVHDSERLSGLLENAGLSRKPEEQAEEVADVVVFNTCAVRENADNKL 75

Query: 81  YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140
           Y  LG ++NLK  R      + + V GC+AQ + + I++++P V+VV G      LP LL
Sbjct: 76  YGHLGLLKNLKAER----PGMQIAVGGCLAQKDRDTIVKKAPWVDVVFGTHNIGSLPALL 131

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           +RA   K+         D F           R+     +++I  GC+  CTFC+VP  RG
Sbjct: 132 DRATHNKKAQLEILESLDVFPSTLPTR----RESVYAGWVSISVGCNNTCTFCIVPSLRG 187

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E  R   +++ E + L+D+G  E+TLLGQNVN++  +   G++  F  LL +  EI+GL
Sbjct: 188 KERDRRPGEILAEIQALVDDGAIEVTLLGQNVNSYGVEF--GDRLAFGKLLRACGEIEGL 245

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+T+ HP   +D +I+A  +   +MP LH+P+QSGSD++LK M R + + ++  I+D
Sbjct: 246 ERVRFTSPHPAAFTDDVIEAMAETPNVMPQLHMPLQSGSDKVLKDMRRSYRSKKFLGILD 305

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R   P  AI++D IVGFPGET++DF+AT+D+V    ++ AF+F+YS R GTP + + E
Sbjct: 306 KVRERIPHAAITTDIIVGFPGETEEDFQATLDVVQASRFSSAFTFQYSKRPGTPAAELEE 365

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG----KLVGRSPWLQ 436
           Q+ + V  ER   L +         N   +G+ +EV++ +    K     +L GR+   +
Sbjct: 366 QLPKAVVQERYERLTQLQDRIAKEENAKQLGRTVEVMVTEQSGRKSAETHRLTGRAQDQR 425

Query: 437 SVVLN----SKNHNIGDIIKVRITDVKISTLY 464
            V  +    ++    GD+  + IT+V    L 
Sbjct: 426 LVHFSVPDGAETPRPGDLATLPITEVAAFHLI 457


>gi|331091143|ref|ZP_08339985.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Lachnospiraceae bacterium 2_1_46FAA]
 gi|330405365|gb|EGG84901.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Lachnospiraceae bacterium 2_1_46FAA]
          Length = 485

 Score =  422 bits (1084), Expect = e-116,   Method: Composition-based stats.
 Identities = 159/446 (35%), Positives = 249/446 (55%), Gaps = 13/446 (2%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
            F V ++GCQMN  DS ++  +    GY      + AD I+ NTC +RE A  +VY  LG
Sbjct: 49  TFCVTTFGCQMNARDSEKLVGILEQIGYAEETDEEKADFIIYNTCTVRENANMRVYGRLG 108

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +++ +K    KE   +++ + GC+ Q     E++ +    V+++ G    Y+  EL+   
Sbjct: 109 QLKRVK----KENPHMMIGLCGCMMQEPEVVEKLKKSYRFVDLIFGTHNIYKFAELIVTR 164

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
              +R+V   +   DK     + D    RK    + + I  GC+ FC++C+VPY RG E 
Sbjct: 165 FESERMVIDIWKDTDKI----VEDLPSERKFSFKSGVNIMFGCNNFCSYCIVPYVRGRER 220

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR+   +V E  +L+ +GV E+ LLGQNVN+  GK L+    TF+ LL  + +I GL R+
Sbjct: 221 SRNPKDIVREIERLVADGVVEVMLLGQNVNS-YGKNLET-PMTFAQLLQEVEKIDGLKRI 278

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+ TSHP+D+SD LI+   +   +  +LHLPVQSGS RIL+ MNRR+T  +Y +++ +I+
Sbjct: 279 RFMTSHPKDLSDDLIEVMKNSKKICKHLHLPVQSGSSRILQKMNRRYTKEQYLELVRKIK 338

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           +  PDI++++D IVGFPGET++DF  TMD+V ++ Y  AF+F YS R GTP + M  Q+ 
Sbjct: 339 TAIPDISLTTDIIVGFPGETEEDFLETMDVVKQVRYDSAFTFIYSKRTGTPAATMENQIA 398

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSVVLNS 442
           ++V  +R   L K+++           G   EVL+E  +  +   + GR      V    
Sbjct: 399 DDVVKDRFDRLLKEVQGISTEVCGVHTGTTQEVLVESLNDHDDSLVTGRLSNNILVHFPG 458

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
               IG I+ V++ + K     G  V
Sbjct: 459 DEDLIGKIVDVKLEECKGFYYIGTRV 484


>gi|325661614|ref|ZP_08150238.1| hypothetical protein HMPREF0490_00972 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325472141|gb|EGC75355.1| hypothetical protein HMPREF0490_00972 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 491

 Score =  422 bits (1084), Expect = e-116,   Method: Composition-based stats.
 Identities = 162/459 (35%), Positives = 252/459 (54%), Gaps = 13/459 (2%)

Query: 13  MVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHI 72
           +V +  ++   P      ++GCQMN  DS ++  +    GY+   + +DAD ++ NTC +
Sbjct: 43  LVKEQSEKLGRPLTACTTTFGCQMNARDSEKLLGVLEQIGYQEETNEEDADFVIYNTCTV 102

Query: 73  REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGP 130
           RE A  +VY  LG++  +K    K+   +L+ + GC+ Q     E+I +    V+++ G 
Sbjct: 103 RENANMRVYGRLGQLNRVK----KQKPHMLIGLCGCMMQEPEVVEKIKKSYRFVDLIFGT 158

Query: 131 QTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190
              Y+  EL+      +R+V   +   DK     + D    RK    + + I  GC+ FC
Sbjct: 159 HNIYKFAELIVTRLESQRMVIDIWKDTDKI----VEDLPSERKFSFKSGVNIMFGCNNFC 214

Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDL 250
           ++C+VPY RG E SR+   ++ E + L+ +GV E+ LLGQNVN+  GK L+    TF+ L
Sbjct: 215 SYCIVPYVRGRERSRNPEDIIREIQGLVADGVVEVMLLGQNVNS-YGKTLE-HPMTFAQL 272

Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
           L  + +I+GL R+R+ TSHP+D+SD LI+       +  +LHLPVQSGS  ILK MNRR+
Sbjct: 273 LTEIEKIEGLERIRFMTSHPKDLSDELIEVMKHSKKICKHLHLPVQSGSTEILKKMNRRY 332

Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370
           T  +Y +++ +I+   PDI++++D IVGFPGET++DF  TMD+V K+ Y  AF+F YS R
Sbjct: 333 TKEQYLELVRKIKEAVPDISLTTDIIVGFPGETEEDFLETMDVVKKVRYDSAFTFIYSKR 392

Query: 371 LGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLV 429
            GTP + M  QV E+V  +R   L K+++           G    VL+E  +  +   + 
Sbjct: 393 TGTPAAAMENQVPEDVVKDRFDRLLKEVQSISAEVCSVHEGTTQSVLVEAVNDHDPALVT 452

Query: 430 GRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           GR      V    +   IG I+ VR+   K     G  V
Sbjct: 453 GRLSNNILVHFPGEKELIGKIVSVRLDACKGFYYIGTRV 491


>gi|238916920|ref|YP_002930437.1| 2-alkenal reductase [Eubacterium eligens ATCC 27750]
 gi|238872280|gb|ACR71990.1| 2-alkenal reductase [Eubacterium eligens ATCC 27750]
          Length = 473

 Score =  422 bits (1084), Expect = e-116,   Method: Composition-based stats.
 Identities = 155/444 (34%), Positives = 240/444 (54%), Gaps = 15/444 (3%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V ++GCQMN  DS ++  +    GY      D +D ++ NTC +RE A  KVY  LG ++
Sbjct: 39  VHTFGCQMNARDSEKLLGVLKEIGYLETEDEDKSDFVIYNTCTVRENANLKVYGRLGHLK 98

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELL-ERARF 145
           N+K         +L+ + GC+ Q     E+I      V++V G    Y + +L+  R   
Sbjct: 99  NVKRK----NPHMLIAMCGCMMQEPDVVEKIRDSYKFVDIVFGTFNIYAMAKLIYNRITS 154

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G +V+D     +D  E L        RK    + + I  GC+ FCT+C+VPY RG EISR
Sbjct: 155 GSQVIDIWEKTKDIVEELPT-----ERKFPFKSGVNIMYGCNNFCTYCIVPYVRGREISR 209

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
               ++ E  +L+ +GV E+ LLGQNV++  GK LD    +F+ LL  + +I+GL R+R+
Sbjct: 210 EPKDIIMEIERLVKDGVKEVMLLGQNVDS-YGKTLD-NPVSFAQLLREIDKIEGLERIRF 267

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
            T HP+D+ +  ++   D   +  ++H P+QSGS R+LK MNR++T   Y + ++ IR +
Sbjct: 268 MTPHPKDIEEETLEVIRDSKKICNHIHFPLQSGSSRLLKLMNRKYTKEHYLEQVEMIRRI 327

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            PD++I++D IVGFPGET++DF  T+D+V K  +  A++F YS R GTP + M  QV E+
Sbjct: 328 LPDVSITTDIIVGFPGETEEDFEDTIDVVKKAKFDSAYTFIYSKRTGTPAARMENQVPED 387

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKH-GKEKGKLVGRSPWLQSVVLNSKN 444
           V  +R   L   + E          G  ++VL+E     E+G + GR      V      
Sbjct: 388 VVKDRFNRLLATVNEVSHEHIRRYEGMDMKVLVEGKDDHEEGFVTGRMTNNILVHFAGDE 447

Query: 445 HNIGDIIKVRITDVKISTLYGELV 468
             IG I+ V + + K     G L+
Sbjct: 448 SLIGQIVTVHLDECKGFYYMGRLI 471


>gi|317500218|ref|ZP_07958449.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|316898389|gb|EFV20429.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Lachnospiraceae bacterium
           8_1_57FAA]
          Length = 483

 Score =  422 bits (1084), Expect = e-116,   Method: Composition-based stats.
 Identities = 155/447 (34%), Positives = 246/447 (55%), Gaps = 15/447 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
            F V ++GCQMN  DS ++  +    GY      + AD ++ NTC +RE A ++VY  LG
Sbjct: 46  TFCVTTFGCQMNARDSEKLVGILEQIGYVEEPDEEKADFVIYNTCTVRENANQRVYGRLG 105

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELL-ER 142
           ++  +K    K    +++ + GC+ Q     E++ +    V+++ G    Y+  EL+  R
Sbjct: 106 QLGRIK----KTNPHMMIALCGCMMQEPEVVEKLKKSYRFVDIIFGTHNIYKFAELIVSR 161

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
              GK V+D     +   E L        RK    + + I  GC+ FC++C+VPY RG E
Sbjct: 162 MNSGKMVIDIWKDTDKIVEDLP-----SERKYPFKSGVNIMFGCNNFCSYCIVPYVRGRE 216

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR    ++ E  +L ++GV E+ LLGQNVN+  GK L+    TF+ LL  + +I  + R
Sbjct: 217 RSRDPKAIIREIERLAEDGVVEVMLLGQNVNS-YGKTLE-HPMTFAQLLREIEKIDKIER 274

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+ TSHP+D+SD LI+       +  +LHLPVQSGS RIL+ MNRR+T   Y ++++++
Sbjct: 275 IRFMTSHPKDLSDELIEVMAQSKKICRHLHLPVQSGSTRILEKMNRRYTKEHYLKLVEKL 334

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R   PDI++++D IVGFPGET++DFR T+D+V K+ Y  AF+F YS R GTP + M +Q+
Sbjct: 335 RKAIPDISLTTDIIVGFPGETEEDFRETLDVVRKVQYDSAFTFIYSKRTGTPAAAMEDQI 394

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GRSPWLQSVVLN 441
            ++V  +R   L ++++           G +  VL+E   +   +L+ GR      V   
Sbjct: 395 SDDVVKDRFGRLLEEVQTISSKMCSRHEGTVQRVLVESCNEHDERLMTGRLSNNLLVHFP 454

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                IG    V + + K     G++V
Sbjct: 455 GDESMIGTFADVSLDECKGFYYIGKIV 481


>gi|331084790|ref|ZP_08333878.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Lachnospiraceae bacterium 9_1_43BFAA]
 gi|330410884|gb|EGG90306.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Lachnospiraceae bacterium 9_1_43BFAA]
          Length = 491

 Score =  422 bits (1084), Expect = e-116,   Method: Composition-based stats.
 Identities = 161/459 (35%), Positives = 252/459 (54%), Gaps = 13/459 (2%)

Query: 13  MVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHI 72
           +V +  ++   P      ++GCQMN  DS ++  +    GY+   + ++AD ++ NTC +
Sbjct: 43  LVKEQSEKLGRPLTACTTTFGCQMNARDSEKLLGVLEQIGYQEETNEEEADFVIYNTCTV 102

Query: 73  REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGP 130
           RE A  +VY  LG++  +K    K+   +L+ + GC+ Q     E+I +    V+++ G 
Sbjct: 103 RENANMRVYGRLGQLNRVK----KQKPHMLIGLCGCMMQEPEVVEKIKKSYRFVDLIFGT 158

Query: 131 QTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190
              Y+  EL+      +R+V   +   DK     + D    RK    + + I  GC+ FC
Sbjct: 159 HNIYKFAELIVTRLESQRMVIDIWKDTDKI----VEDLPSERKFSFKSGVNIMFGCNNFC 214

Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDL 250
           ++C+VPY RG E SR+   ++ E + L+ +GV E+ LLGQNVN+  GK L+    TF+ L
Sbjct: 215 SYCIVPYVRGRERSRNPEDIIREIQGLVADGVVEVMLLGQNVNS-YGKTLE-HPMTFAQL 272

Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
           L  + +I+GL R+R+ TSHP+D+SD LI+       +  +LHLPVQSGS  ILK MNRR+
Sbjct: 273 LTEIEKIEGLERIRFMTSHPKDLSDELIEVMKHSKKICKHLHLPVQSGSTEILKKMNRRY 332

Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370
           T  +Y +++ +I+   PDI++++D IVGFPGET++DF  TMD+V K+ Y  AF+F YS R
Sbjct: 333 TKEQYLELVRKIKEAVPDISLTTDIIVGFPGETEEDFLETMDVVKKVRYDSAFTFIYSKR 392

Query: 371 LGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLV 429
            GTP + M  QV E+V  +R   L K+++           G    VL+E  +  +   + 
Sbjct: 393 TGTPAAAMENQVPEDVVKDRFDRLLKEVQSISAEVCSVHEGTTQSVLVEAVNDHDPALVT 452

Query: 430 GRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           GR      V    +   IG I+ VR+   K     G  V
Sbjct: 453 GRLSNNILVHFPGEKELIGKIVSVRLDACKGFYYIGTRV 491


>gi|167765542|ref|ZP_02437606.1| hypothetical protein CLOSS21_00036 [Clostridium sp. SS2/1]
 gi|167712727|gb|EDS23306.1| hypothetical protein CLOSS21_00036 [Clostridium sp. SS2/1]
          Length = 497

 Score =  422 bits (1084), Expect = e-116,   Method: Composition-based stats.
 Identities = 155/445 (34%), Positives = 252/445 (56%), Gaps = 16/445 (3%)

Query: 28  FVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRI 87
            V ++GCQMN  DS ++  +  + GYE V + ++AD ++ NTC +RE A  K+Y  LG++
Sbjct: 63  HVTTFGCQMNEKDSEKLLGILETIGYEEVET-EEADFLIFNTCTVRENANTKLYGHLGQV 121

Query: 88  RNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLE-RAR 144
           + +K         +++ + GC+ Q E   E+I      V+++ G    ++L ELL+ R  
Sbjct: 122 KKMKER----NPQMMIGLCGCMMQEEHVIEKIRSSYKFVDIIFGTHNIFKLAELLKARVD 177

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
               +VD     +   E L       +RK      + I  GC+ FC++C+VPY RG E S
Sbjct: 178 SKGMIVDIWKDTDQIVEDLP-----SDRKFSFKCGVNIMYGCNNFCSYCIVPYVRGRERS 232

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R    ++ E ++++  GV E+ LLGQNVN+  GK L+ E  +F++LL  + +++GL R+R
Sbjct: 233 RKPEDIIKEVKQVVSEGVKEVMLLGQNVNS-YGKTLE-EPMSFAELLREVEKVEGLERIR 290

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           + T HP+D+SD LI+       +  ++HLP+QSGS R+LK MNR +T  +Y  +  +I+ 
Sbjct: 291 FMTPHPKDLSDDLIEVMATSKKVCKHMHLPMQSGSSRLLKLMNRHYTKEQYVALAKKIQE 350

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             P ++ ++D IVGFPGET++DF+ T+D+V ++G+  A+++ YS R GTP ++M +QVD+
Sbjct: 351 RIPGVSFTTDIIVGFPGETEEDFKETLDVVREVGFDSAYTYVYSKRSGTPAASMEDQVDK 410

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLNSK 443
           +V  +R   L   L+E         VG I  VLIE+    E+G L GR      V     
Sbjct: 411 DVIKDRFDRLLALLKETSAKNCKKKVGDIERVLIEEENTHEEGMLTGRLENNLLVHFKGC 470

Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468
              IG +  V++ + K     GE +
Sbjct: 471 KEQIGTMADVKLVEEKGFYYMGEQI 495


>gi|224078161|ref|XP_002192492.1| PREDICTED: CDK5 regulatory subunit associated protein 1
           [Taeniopygia guttata]
          Length = 593

 Score =  422 bits (1084), Expect = e-116,   Method: Composition-based stats.
 Identities = 158/474 (33%), Positives = 245/474 (51%), Gaps = 38/474 (8%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
            ++++YGCQMNV D+  +  +    GY R   +++AD+++L TC +REKA   V++ L  
Sbjct: 108 LYLETYGCQMNVSDTEIVWAILQKNGYARTKELEEADVVLLVTCSVREKAEHAVWNRLRH 167

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           +R LK  R +    L V + GC+A+   EEIL +  +V+VV GP  Y  LP LL  A  G
Sbjct: 168 LRALKARRPRARAPLRVGILGCMAERLKEEILHKEKLVDVVAGPDAYRDLPRLLAVAESG 227

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           ++  +   S+++ +  +  V        G TAF++I  GCD  C++C+VP+TRG E SR 
Sbjct: 228 QQAANVLLSLDETYADILPVQTSAG---GTTAFVSIMRGCDNMCSYCIVPFTRGRERSRP 284

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRG---------------------KGLDGEKC 245
           ++ ++ E R L D GV E+TLLGQNVN++R                              
Sbjct: 285 IASILQEVRMLSDQGVKEVTLLGQNVNSFRDLSEVQFQSVTAPGLSRGFRTVYKAKQGGL 344

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
            FS LL  +S I   +R+R+T+ HP+D  D +++   +   +  +LHLP QSGS R+L++
Sbjct: 345 RFSHLLDQVSRIDPEMRIRFTSPHPKDFPDEVLQLIQERHNICKHLHLPAQSGSTRVLEA 404

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           M R +T   Y +++  +R   P +++SSDFI GF GET++D   T+ L+ ++ Y   F F
Sbjct: 405 MRRGYTREAYLELVHHVRDSIPGVSLSSDFIAGFCGETEEDHLQTVSLLREVRYNVGFLF 464

Query: 366 KYSPRLGTPG-SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE 424
            YS R  T     + + V  +VK +RL  L    RE+    N   VG+   VL+E   K 
Sbjct: 465 AYSMRQKTRAHHRLQDDVPADVKKQRLEQLIATFREEAARANAELVGRAQLVLVEGPSKR 524

Query: 425 K-GKLVGRSPWLQSVVLNSKN------------HNIGDIIKVRITDVKISTLYG 465
              +L GR+     V+                    GD + V++T     TL G
Sbjct: 525 SASELCGRNDGNIKVIFPDTELEDAAERKAPGRAQPGDYVMVKVTSASSQTLRG 578


>gi|331085298|ref|ZP_08334384.1| ribosomal protein S12 methylthiotransferase rimO [Lachnospiraceae
           bacterium 9_1_43BFAA]
 gi|330408081|gb|EGG87571.1| ribosomal protein S12 methylthiotransferase rimO [Lachnospiraceae
           bacterium 9_1_43BFAA]
          Length = 440

 Score =  421 bits (1083), Expect = e-115,   Method: Composition-based stats.
 Identities = 145/449 (32%), Positives = 231/449 (51%), Gaps = 18/449 (4%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
               S GC  N+ D+  M  M  S+GY+ V    +AD+IV+NTC     A E+    +  
Sbjct: 3   ILFVSLGCDKNLVDTEVMLGMLASRGYQMVEDESEADIIVINTCCFIHDAKEESIQTILE 62

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           +  LK    KEG    ++V GC+AQ   +EI+   P V+ V+G  +Y ++ + ++ A  G
Sbjct: 63  MSELK----KEGRLKALIVTGCLAQRYQQEIIDEIPEVDAVLGTTSYDKILDAVDEALEG 118

Query: 147 KRVVDTDYSVEDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                  Y      + L  VD        G  A+L I EGCDK CT+C++P  RG   S 
Sbjct: 119 HH-----YLKMTDIDALPTVDSKRLVTTGGHFAYLKIAEGCDKHCTYCIIPKIRGNFRSV 173

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            + Q+V EA +L + GV E+ L+ Q      GK L GEK +   LL  L +I G+  +R 
Sbjct: 174 PMEQLVREAEELAEQGVKELILVAQETT-LYGKDLYGEK-SLHKLLKELCKIAGIRWIRV 231

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
              +P +++D LI+   +   +  YL LP+Q  SD ILK M RR +  +  +II+++R  
Sbjct: 232 LYCYPEEITDELIQVMKEESKICHYLDLPIQHASDGILKRMGRRTSKAQLIEIIEKLRRE 291

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            PDI + +  I GFPGET++     MD VD++ + +   F YSP   TP + M +Q++EN
Sbjct: 292 IPDITLRTTLITGFPGETEEQHEELMDFVDQMEFDRLGVFTYSPEEDTPAATMPDQIEEN 351

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVLN 441
           VK +R   L +  ++      +  +G+ + V+IE    ++   VGR+    P +  ++  
Sbjct: 352 VKEDRQAELMELQQDIAFEQAEDMIGREVLVMIEGKIADENAYVGRTYKDAPNVDGLIFV 411

Query: 442 SKNHNI--GDIIKVRITDVKISTLYGELV 468
           + +  +  GD  +V++T      L GE+V
Sbjct: 412 NTDEELMSGDFARVKVTGALEYDLIGEIV 440


>gi|311744192|ref|ZP_07717997.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Aeromicrobium marinum DSM
           15272]
 gi|311312547|gb|EFQ82459.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Aeromicrobium marinum DSM
           15272]
          Length = 487

 Score =  421 bits (1083), Expect = e-115,   Method: Composition-based stats.
 Identities = 170/449 (37%), Positives = 260/449 (57%), Gaps = 19/449 (4%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + + + V++YGCQMNV+DS R+  +  + GYE V      DL+V NTC +RE A  K+Y 
Sbjct: 1   MTRTYEVRTYGCQMNVHDSERLSGLLETAGYEPVG-AGTPDLVVFNTCAVRENADNKLYG 59

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            LG + ++K +       + + V GC+AQ + + I RR+P V+VV G      LP LLER
Sbjct: 60  NLGHVASVKAAH----PGMQIAVGGCLAQKDRDTITRRAPYVDVVFGTHNIGSLPVLLER 115

Query: 143 ARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           AR  +   V+   S+E     L        R     A+++I  GC+  CTFC+VP  RG 
Sbjct: 116 ARVAEESQVEILESLEVFPSTLPT-----KRDSVFAAWVSISVGCNNTCTFCIVPALRGK 170

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E  R    V+ E   L+ +GV E+TLLGQNVNA+  +   G+   F+ LL +   I+GL 
Sbjct: 171 EKDRRPGDVLAEIEALVADGVVEVTLLGQNVNAYGVEF--GDSQAFAKLLRACGRIEGLE 228

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+T+ HP+D +D +I A  +   +MP LH+P+QSGSDR+L++M R +   ++  IIDR
Sbjct: 229 RVRFTSPHPKDFTDDVIAAMAETPTVMPQLHMPLQSGSDRVLRAMRRSYRREKFLGIIDR 288

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R+  PD AI++D IVGFPGET++DF  T+++V    +  AF+F+YS R GTP +++ +Q
Sbjct: 289 VRAAMPDAAITTDIIVGFPGETEEDFVQTLEVVRAARFTSAFTFQYSRRPGTPAADLPDQ 348

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKG---KLVGRSPWLQS 437
           + + V  ER   L + + E   +      G+++E+L+ +  GK+ G   +L GR+   + 
Sbjct: 349 LPKAVVQERYDRLVEVVDEVAWAEARTQEGRVVELLVSDHEGKKDGATRRLTGRARDNRL 408

Query: 438 VVLNSKNHNI--GDIIKVRITDVKISTLY 464
           V      H I  GD++ VRIT      L 
Sbjct: 409 VHFVPGEHEIRPGDVVDVRITRAAPHHLV 437


>gi|159903894|ref|YP_001551238.1| 2-methylthioadenine synthetase [Prochlorococcus marinus str. MIT
           9211]
 gi|229890601|sp|A9BBS2|MIAB_PROM4 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|159889070|gb|ABX09284.1| 2-methylthioadenine synthetase [Prochlorococcus marinus str. MIT
           9211]
          Length = 467

 Score =  421 bits (1083), Expect = e-115,   Method: Composition-based stats.
 Identities = 170/465 (36%), Positives = 263/465 (56%), Gaps = 23/465 (4%)

Query: 15  SQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIRE 74
           +Q   Q      +++ ++GCQMN  DS RM  +    GY++      ADL++ NTC IR+
Sbjct: 12  AQESLQSPTKGSYWITTFGCQMNKADSERMAGILERMGYKQAEEELQADLVLYNTCTIRD 71

Query: 75  KAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYY 134
            A +KVYS+LGR    K    K    L ++VAGCVAQ EGE +LRR P +++V+GPQ   
Sbjct: 72  NAEQKVYSYLGRQALRK----KLFPQLKLIVAGCVAQQEGESLLRRVPELDLVMGPQHAN 127

Query: 135 RLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCV 194
           RL  LL +   G++V+ T+       E L+       R   + A++ +  GC++ CT+CV
Sbjct: 128 RLETLLNKVETGQQVLATEELY--IIEDLTTAR----RDSSICAWVNVIYGCNERCTYCV 181

Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG------EKCTFS 248
           VP  RG E SR+   +  E   L + G  E+TLLGQN++A  G+ L G      +K T +
Sbjct: 182 VPSVRGKEQSRTPPAIKREIENLANTGFKEVTLLGQNIDA-YGRDLPGTTPQGRKKNTLT 240

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
           DLLY + +I+G+ R+R+ TSHPR  +  LI+A  +L  +  + H+P QSG D IL  M R
Sbjct: 241 DLLYYIHDIEGIERIRFATSHPRYFTSRLIEACAELPKVCEHFHIPFQSGDDEILNQMRR 300

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
            +    Y++II RIR + P+ +I++D IV FPGET++ F+ ++ LV++IG+ Q  +  YS
Sbjct: 301 GYKIKTYKKIIGRIRELMPNASITADVIVAFPGETNEQFQRSLSLVEEIGFDQLNTAAYS 360

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGK 427
           PR  TP +    Q+ E +K ERL  L   +  +    N     ++ EVL E    K+K +
Sbjct: 361 PRPNTPAALWPNQIPEEIKIERLRKLNSLVEIKAKERNVRYKDRVEEVLAENTNPKDKQQ 420

Query: 428 LVGRSPWLQSVVLN-----SKNHNIGDIIKVRITDVKISTLYGEL 467
           L+GR+   +            ++  GD++KVR+ D++  +L G +
Sbjct: 421 LMGRTRTNRLTFFPKVDNQGNSYKPGDLVKVRVKDIRAFSLSGVI 465


>gi|325660993|ref|ZP_08149620.1| ribosomal protein S12 methylthiotransferase rimO [Lachnospiraceae
           bacterium 4_1_37FAA]
 gi|325472500|gb|EGC75711.1| ribosomal protein S12 methylthiotransferase rimO [Lachnospiraceae
           bacterium 4_1_37FAA]
          Length = 440

 Score =  421 bits (1083), Expect = e-115,   Method: Composition-based stats.
 Identities = 144/449 (32%), Positives = 232/449 (51%), Gaps = 18/449 (4%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
               S GC  N+ D+  M  M  S+GY+ V    +AD+IV+NTC     A E+    +  
Sbjct: 3   ILFVSLGCDKNLVDTEVMLGMLASRGYQMVEDESEADIIVINTCCFIHDAKEESIQTILE 62

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           +  LK    KEG    ++V GC+AQ   +EI+   P V+ V+G  +Y ++ + ++ A  G
Sbjct: 63  MSELK----KEGRLKALIVTGCLAQRYQQEIIDEIPEVDAVLGTTSYDKILDAVDEALEG 118

Query: 147 KRVVDTDYSVEDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                  Y      + L  VD        G  A+L I EGCDK CT+C++P  RG   S 
Sbjct: 119 HH-----YLKMTDIDALPTVDSKRLVTTGGHFAYLKIAEGCDKHCTYCIIPKIRGNFRSV 173

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            + Q+V EA++L + GV E+ L+ Q      GK L GEK +   LL  L +I G+  +R 
Sbjct: 174 PMEQLVHEAQELAEQGVKELILVAQETT-LYGKDLYGEK-SLHKLLKELCKIAGIRWIRV 231

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
              +P +++D LI+   +   +  YL LP+Q  SD ILK M RR +  +  +II+++R  
Sbjct: 232 LYCYPEEITDELIQVMKEESKICHYLDLPIQHASDGILKRMGRRTSKAQLIEIIEKLRRE 291

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            PDI + +  I GFPGET++     MD VD++ + +   F YSP   TP + M +Q++E+
Sbjct: 292 IPDITLRTTLITGFPGETEEQHEELMDFVDQMEFDRLGVFTYSPEEDTPAATMPDQIEES 351

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVLN 441
           VK +R   L +  ++      +  +G+ + V+IE    ++   VGR+    P +  ++  
Sbjct: 352 VKEDRQAELMELQQDIAFEQAEDMIGREVLVMIEGKIADENAYVGRTYKDAPNVDGLIFV 411

Query: 442 SKNHNI--GDIIKVRITDVKISTLYGELV 468
           + +  +  GD  +V++T      L GE+V
Sbjct: 412 NTDEELMSGDFARVKVTGALEYDLIGEIV 440


>gi|238927480|ref|ZP_04659240.1| tRNA 2-methylthioadenine synthetase [Selenomonas flueggei ATCC
           43531]
 gi|238884762|gb|EEQ48400.1| tRNA 2-methylthioadenine synthetase [Selenomonas flueggei ATCC
           43531]
          Length = 437

 Score =  421 bits (1083), Expect = e-115,   Method: Composition-based stats.
 Identities = 166/445 (37%), Positives = 253/445 (56%), Gaps = 14/445 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R+ +  YGCQMN+ D+ RME    + GY R     DAD+I++NTC +RE A +KVY  +G
Sbjct: 4   RYKILVYGCQMNIADAERMEGQLQAAGYVRTEETADADVILINTCCVRETAEDKVYGKIG 63

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            I+ +K         L+  + GC+AQ EGE ++RR+P ++ V+G      L  ++     
Sbjct: 64  EIKKVKERH----PQLIFGITGCMAQKEGENLMRRAPHIDFVLGTGKVQELGRIVAEIAA 119

Query: 146 GK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            +  VVD         E L I      R   ++A++ I  GC+ +CT+C+VPY RG E S
Sbjct: 120 KRTPVVDVALDARAVEEHLPIA-----RSGTLSAWVPIMYGCNNYCTYCIVPYVRGRERS 174

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R   +VV E R+   +G  E+TLLGQNVN++   G D  +  F+DLL  +  ++G+ R+R
Sbjct: 175 RMPEEVVAEVRRAAADGYREVTLLGQNVNSY---GKDHGQADFADLLRMVDAVEGIRRVR 231

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           + TSHP+D+SD LI    +   +  ++HLPVQ GS+RILK+MNR +T  +YR+   R+R 
Sbjct: 232 FMTSHPKDISDKLIDTIKNGTHICEHIHLPVQYGSNRILKAMNRVYTVEQYRERARRVRE 291

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             P  ++++D IVGFPGET++DF  T+D + ++ Y  A++F YS R GTP + M  QV +
Sbjct: 292 ALPGASLTTDLIVGFPGETEEDFAETLDFLREMRYDAAYTFLYSKRSGTPAAAMAAQVPD 351

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVLNSK 443
            VK  RL  L     E   + N+       EV++E   K +     GR+   + V+    
Sbjct: 352 EVKHARLERLMAVQNEISRAINEGLRSAQAEVMVEGASKNDPAVWSGRTRTNKIVLFPHG 411

Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468
              +GD ++V+IT  +   L GE+V
Sbjct: 412 AERVGDFVQVKITQPQTWVLKGEVV 436


>gi|154504378|ref|ZP_02041116.1| hypothetical protein RUMGNA_01882 [Ruminococcus gnavus ATCC 29149]
 gi|153795307|gb|EDN77727.1| hypothetical protein RUMGNA_01882 [Ruminococcus gnavus ATCC 29149]
          Length = 494

 Score =  421 bits (1083), Expect = e-115,   Method: Composition-based stats.
 Identities = 160/449 (35%), Positives = 249/449 (55%), Gaps = 13/449 (2%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P  F V ++GCQMN  DS ++  +    GY      + AD ++ NTC +RE A +KVY  
Sbjct: 52  PLTFHVTTFGCQMNARDSEKLTGILEQIGYVEEEEENQADFVIYNTCTVRENANQKVYGH 111

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLE 141
           LG++  +K    K+   +L+ + GC+ Q     E++ +    V+++ G    ++  EL+ 
Sbjct: 112 LGQLNRVK----KKNPHMLIGLCGCMMQEPEVVEKLKKSYRFVDLIFGTHNIFKFAELVA 167

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
                 R+V   +   DK     + D    RK    + + I  GC+ FC++C+VPY RG 
Sbjct: 168 TRLESDRMVIDIWKDTDKI----VEDLPSERKFSFKSGVNIMFGCNNFCSYCIVPYVRGR 223

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR+   ++ E   L+ +GV E+ LLGQNVN+  GK L+ E  TF+ LL  + +I+GL 
Sbjct: 224 ERSRNPKDIIREIESLVADGVVEVMLLGQNVNS-YGKTLE-EPMTFAQLLQEIEKIEGLE 281

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+ TSHP+D+SD LI+       +  +LHLPVQSGS RIL+ MNRR+T   Y  ++++
Sbjct: 282 RIRFMTSHPKDLSDELIEVMAQSQKICKHLHLPVQSGSTRILEKMNRRYTKEHYLGLVEK 341

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I++  PDI++++D IVGFPGET++DF+ T+D+V K+ Y  AF+F YS R GTP + + EQ
Sbjct: 342 IKAAVPDISLTTDIIVGFPGETEEDFQETLDVVRKVRYDSAFTFIYSKRTGTPAAVLEEQ 401

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GRSPWLQSVVL 440
           V E +  +R   L K+++             +  VL+E        LV GR      V  
Sbjct: 402 VPEEIVKDRFDRLLKEVQSISAEVCSVHTKTVQRVLVESVNDHDDSLVTGRMSNNLLVHF 461

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELVV 469
             +   +G ++ VR+   K     GE+V 
Sbjct: 462 PGEKDLVGKLVDVRLDTCKGFYYLGEMVA 490


>gi|73992243|ref|XP_534385.2| PREDICTED: similar to CDK5 regulatory subunit associated protein 1
           isoform a [Canis familiaris]
          Length = 583

 Score =  421 bits (1083), Expect = e-115,   Method: Composition-based stats.
 Identities = 156/479 (32%), Positives = 253/479 (52%), Gaps = 38/479 (7%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ ++++YGCQMNV D+     +    GY R  ++ +AD+I+L TC IREKA + +++ L
Sbjct: 96  RKVYLETYGCQMNVNDTEIAWSVLQKSGYLRTRNLQEADVILLVTCSIREKAEQTIWNRL 155

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            +++ LK  R++    L + + GC+A+   EEIL R  +V+++ GP  Y  LP LL  A 
Sbjct: 156 QQLKALKTKRLRSRVPLRIGILGCMAERLKEEILNREKMVDILAGPDAYRDLPRLLAVAE 215

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G++  +   S+++ +  +  V          +AF++I  GCD  C++C+VP+TRG E S
Sbjct: 216 SGQQAANVLLSLDETYADVMPVQTS---PSATSAFVSIMRGCDNMCSYCIVPFTRGRERS 272

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAW-----------------RGKGLDGEKC-- 245
           R ++ +++E RKL + G+ E+TLLGQNVN++                 RG   + +    
Sbjct: 273 RPVASILEEVRKLSEQGLKEVTLLGQNVNSFQDSSEVQFNNAVSTNLSRGFSTNYKPKKG 332

Query: 246 --TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
              F+ LL  +S +   +R+R+T+ HP+D  D +++   + D +   +HLP QSGS R+L
Sbjct: 333 GLRFTYLLDQVSRVDPEMRIRFTSPHPKDFPDEVLQLIHERDNICKQIHLPAQSGSSRVL 392

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           ++M R ++   Y ++I  IR   P +++SSDFI GF GET++D   T+ L+ ++ Y   F
Sbjct: 393 EAMRRGYSREAYVELIHHIRESIPGVSLSSDFIAGFCGETEEDHLQTVSLLREVQYNMGF 452

Query: 364 SFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422
            F YS R  T     + + V E VK  RL  L    RE+    N A VG    VL+E   
Sbjct: 453 LFAYSMRQKTRAYHRLKDDVPEEVKLRRLEELITVFREEATKANMASVGSTQLVLVEGVS 512

Query: 423 KEKGK-LVGRSPWLQSVVLNSKN------------HNIGDIIKVRITDVKISTLYGELV 468
           K     L GR+     V+                    GD + V+IT     TL G ++
Sbjct: 513 KRSATDLCGRNDGNLKVIFPDVEMEDINNSDVRVRAQPGDYVLVKITSTSSQTLKGHVL 571


>gi|194379922|dbj|BAG58313.1| unnamed protein product [Homo sapiens]
          Length = 534

 Score =  421 bits (1082), Expect = e-115,   Method: Composition-based stats.
 Identities = 155/488 (31%), Positives = 257/488 (52%), Gaps = 39/488 (7%)

Query: 17  IVDQCI-VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREK 75
           ++D+ +   ++ ++++YGCQMNV D+     +    GY R +++ +AD+I+L TC IREK
Sbjct: 38  MMDELLGRQRKVYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCSIREK 97

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135
           A + +++ L +++ LK  R +    L + + GC+A+   EEIL R  +V+++ GP  Y  
Sbjct: 98  AEQTIWNRLHQLKALKTRRPRSRVPLRIGILGCMAERLKEEILNREKMVDILAGPDAYRD 157

Query: 136 LPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
           LP LL  A  G++  +   S+++ +  +  V          +AF++I  GCD  C++C+V
Sbjct: 158 LPRLLAVAESGQQAANVLLSLDETYADVMPVQTS---ASATSAFVSIMRGCDNMCSYCIV 214

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG---------------KGL 240
           P+TRG E SR ++ +++E +KL + G+ E+TLLGQNVN++R                +G 
Sbjct: 215 PFTRGRERSRPIASILEEVKKLSEQGLKEVTLLGQNVNSFRDNSEVQFNSAVPTNLSRGF 274

Query: 241 DGEKCT------FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP 294
                T      F+ LL  +S +   +R+R+T+ HP+D  D +++   + D +   +HLP
Sbjct: 275 TTNYKTKQGGLRFAHLLDQVSRVDPEMRIRFTSPHPKDFPDEVLQLIHERDNICKQIHLP 334

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
            QSGS R+L++M R ++   Y +++  IR   P +++SSDFI GF GET++D   T+ L+
Sbjct: 335 AQSGSSRVLEAMRRGYSREAYVELVHHIRESIPGVSLSSDFIAGFCGETEEDHVQTVSLL 394

Query: 355 DKIGYAQAFSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQI 413
            ++ Y   F F YS R  T     + + V E VK  RL  L    RE+    N   VG  
Sbjct: 395 REVQYNMGFLFAYSMRQKTRAYHRLKDDVPEEVKLRRLEELITIFREEATKANQTSVGCT 454

Query: 414 IEVLIEKHGKEKGK-LVGRSPWLQSVVLNSKN------------HNIGDIIKVRITDVKI 460
             VL+E   K     L GR+     V+                    GD + V+IT    
Sbjct: 455 QLVLVEGLSKRSATALCGRNDGNLKVIFPDAEMEDVNNPGLRVRAQPGDYVLVKITSASS 514

Query: 461 STLYGELV 468
            TL G ++
Sbjct: 515 QTLRGHVL 522


>gi|323701900|ref|ZP_08113570.1| MiaB-like tRNA modifying enzyme YliG [Desulfotomaculum nigrificans
           DSM 574]
 gi|323533204|gb|EGB23073.1| MiaB-like tRNA modifying enzyme YliG [Desulfotomaculum nigrificans
           DSM 574]
          Length = 445

 Score =  421 bits (1082), Expect = e-115,   Method: Composition-based stats.
 Identities = 130/448 (29%), Positives = 222/448 (49%), Gaps = 16/448 (3%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
             + S GC  N+ DS  M  +     +   ++  +AD++++NTC   + A E+    +  
Sbjct: 5   VGLVSLGCPKNLVDSEVMLGLLREAKFNITSNEAEADVLIVNTCGFIQSAKEESIRHIFE 64

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           +   K+     G    +VV GC+AQ   +E++   P ++ +VGP     + ++++     
Sbjct: 65  LAQYKDR----GRCQALVVTGCLAQRYHQELMEEIPEIDALVGPGHINDIVQIIKEILAN 120

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           K+        E  ++  +            TA++ + EGCD  C +C +P  RG   SR 
Sbjct: 121 KQRKSHICEPEYIYDEYAP---RLLSTPTYTAYIKVAEGCDNRCAYCAIPNIRGRFRSRP 177

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
           L  +V EA+ L+ NG  EI L+ Q+     G+ + G+  +   LL+ L +I  L  +R  
Sbjct: 178 LESIVAEAKTLVANGTREIILIAQDTT-RYGQDIYGQ-YSLDKLLWLLQDIPDLKWIRIL 235

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
             +P   +D LIKA   L  +  Y+ LPVQ  ++ IL++M R     + R +IDR+R   
Sbjct: 236 YCYPNRFTDGLIKAIAQLPKVCKYIDLPVQHANNEILRAMGRPGNQQQVRSLIDRLRREI 295

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           P + + + FIVGFPGET++ F+  ++ + ++ + +A  F YS   GTP + +  Q+ E +
Sbjct: 296 PGLVLRTSFIVGFPGETEEQFQELLNFMQQVKFDRAGVFTYSQEEGTPAAELPNQIPEEI 355

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKH---GKE--KGKLVGRSPWLQS-VVL 440
           K ER        RE  ++ N   +GQ++EVL+EK     K    G+ +G +P +   V +
Sbjct: 356 KQERYHRAMTLQREISLAQNQRRIGQVLEVLVEKVIDGSKNIYAGRSMGDAPEIDGTVEI 415

Query: 441 NSKNHNI-GDIIKVRITDVKISTLYGEL 467
            S    I G+ + V+IT      L GEL
Sbjct: 416 VSTRPLISGEFVHVKITRALEYDLMGEL 443


>gi|73666881|ref|YP_302897.1| 2-methylthioadenine synthetase [Ehrlichia canis str. Jake]
 gi|123759460|sp|Q3YSK6|MIAB_EHRCJ RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|72394022|gb|AAZ68299.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Ehrlichia canis str.
           Jake]
          Length = 441

 Score =  421 bits (1082), Expect = e-115,   Method: Composition-based stats.
 Identities = 227/449 (50%), Positives = 316/449 (70%), Gaps = 16/449 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +  ++KSYGCQMNVYDSL ME++    G+  V+   +AD+++LNTCHIREKA+EK+YS L
Sbjct: 2   KGLYIKSYGCQMNVYDSLIMENIIKPLGFTVVSEPSEADVVILNTCHIREKASEKLYSEL 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA- 143
           G+IR ++        DL +VVAGCVAQAEGEEI  RSP V++VVGPQ+ + LPELL +A 
Sbjct: 62  GKIRKIQE-----NKDLTIVVAGCVAQAEGEEIFERSPFVDIVVGPQSIHTLPELLVKAH 116

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           R  K+V++ D+ V  KF+ + + +  Y + +  +AF+++QEGC+KFCTFCVVPYTRG E 
Sbjct: 117 RIKKQVINIDFPVISKFDAIPVEE--YTKNQETSAFISVQEGCNKFCTFCVVPYTRGEEY 174

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR++  + +EA  L D+G+ EITL+GQNVNA+ G    G +     L+  +++I  + R+
Sbjct: 175 SRTVEAIFNEALVLADSGIKEITLIGQNVNAYHG-TYKGCEWDLGKLIQHIAKIPNIERI 233

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           RYTTSHPRDM   L +AH   + LMP++HLPVQSGSDRILK MNR+HTA EY  II  +R
Sbjct: 234 RYTTSHPRDMHQSLYEAHKLEEKLMPFVHLPVQSGSDRILKKMNRKHTAEEYIDIISHLR 293

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
             RPDIA SSDFIVGFPGET++DF  T+ LV+K+ ++QA+SFKYSPR GTPG+    QV 
Sbjct: 294 KQRPDIAFSSDFIVGFPGETEEDFENTIKLVEKVKFSQAYSFKYSPRPGTPGAEYPNQVP 353

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKGKLVGRSPWLQSVVLNS 442
           E +K+ERLL LQK LREQQ++FN + +G+   VL   K GK   +++G++ ++QS  +N+
Sbjct: 354 EEIKSERLLRLQKLLREQQLAFNRSMIGETCTVLFSSKKGKFDNQIIGKTAYMQSCYINT 413

Query: 443 KNHNIGDIIK----VRITDVKISTLYGEL 467
            N +          ++I D   ++L G +
Sbjct: 414 DNPS--QFYNSISPIKIIDAHQNSLTGVV 440


>gi|254424981|ref|ZP_05038699.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Synechococcus sp. PCC
           7335]
 gi|196192470|gb|EDX87434.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Synechococcus sp. PCC
           7335]
          Length = 453

 Score =  421 bits (1082), Expect = e-115,   Method: Composition-based stats.
 Identities = 165/452 (36%), Positives = 261/452 (57%), Gaps = 19/452 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +R+ V ++GCQMN  DS RM  +    G         AD+++ NTC IR+ A +KVYS+L
Sbjct: 5   RRYHVTTFGCQMNKADSERMAGILEKMGMRWEEDPLQADVVLYNTCTIRDSAEQKVYSYL 64

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           G+    K        +L +VVAGCVAQ EGE++LRR P ++VV+GPQ   +L  LL +A 
Sbjct: 65  GKQAKRKRKD----PNLTIVVAGCVAQQEGEQLLRRVPELDVVMGPQYANQLESLLAQAA 120

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G +VV TD     +            R+  V+A++ +  GC++ CT+CVVP  RG+E S
Sbjct: 121 QGSQVVATDPVHIMEDITKP------RRESEVSAWVNVIYGCNERCTYCVVPGVRGLEQS 174

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG------EKCTFSDLLYSLSEIK 258
           R+   +  E   L D G  E+TLLGQN++A  G+ L G       + T +DLL+ + ++ 
Sbjct: 175 RTKEAIRAEMAALGDQGYAEVTLLGQNIDA-YGRDLPGITSEGRRENTLTDLLHYVHDVP 233

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           G+ R+R+ TSHPR  ++ L++A  +L  +  + H+P QSG++++LK+M R +T  +Y++I
Sbjct: 234 GIERIRFATSHPRYFTERLVRACAELPKVCEHFHIPFQSGNNQVLKAMGRGYTREKYQRI 293

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           I+ +R   PD +IS+D IV FPGET+  F+ T+ L+++I +    +  YSPR GTP +  
Sbjct: 294 IETVRRYVPDASISADVIVAFPGETEAQFQDTLSLMEEIVFDMVNTAAYSPRPGTPAAEW 353

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQS 437
             Q+DE VK +RL  +   + +Q    +     ++  VL+E    K+  +++GR+   + 
Sbjct: 354 TNQLDEEVKQDRLQRINHLVSQQAEVRSQRYQNRVETVLVEAINPKDPNQVMGRTRGNRL 413

Query: 438 VVLNSK-NHNIGDIIKVRITDVKISTLYGELV 468
              N   N   G I+ V IT+ +  +L GE V
Sbjct: 414 TFFNGDINLLKGQIVPVAITETRAFSLTGERV 445


>gi|138896073|ref|YP_001126526.1| Fe-S oxidoreductase [Geobacillus thermodenitrificans NG80-2]
 gi|196248967|ref|ZP_03147667.1| RNA modification enzyme, MiaB family [Geobacillus sp. G11MC16]
 gi|134267586|gb|ABO67781.1| Fe-S oxidoreductase [Geobacillus thermodenitrificans NG80-2]
 gi|196211843|gb|EDY06602.1| RNA modification enzyme, MiaB family [Geobacillus sp. G11MC16]
          Length = 449

 Score =  421 bits (1082), Expect = e-115,   Method: Composition-based stats.
 Identities = 136/450 (30%), Positives = 239/450 (53%), Gaps = 20/450 (4%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           +P      + GC++N Y++  +  +F   GYER      AD+ V+NTC +     +K   
Sbjct: 1   MP-TVAFHTLGCKVNHYETEAIWQLFKKAGYERKEFESHADVYVINTCTVTNTGDKKSRQ 59

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            + R        ++   D +V V GC AQ    E++   P V++V+G Q  +++ + +E+
Sbjct: 60  VIRRA-------VRRNPDAVVCVTGCYAQTSPAEVMA-IPGVDIVIGTQDRHKILDYVEQ 111

Query: 143 ARFGKRVVDTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
            +  ++ ++  +++     FE + +            A L IQEGC+ FCTFC++P+ RG
Sbjct: 112 FQRERQPINAVHNIMKTRVFEEMDVP----AFTDRTRASLKIQEGCNNFCTFCIIPWARG 167

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE-IKG 259
           +  SR   +++ +AR+L+  G  EI L G +     G G D +   F+ LL  L E + G
Sbjct: 168 LMRSRDPQEIIRQARQLVAAGYKEIVLTGIHTG---GYGTDLKDYNFAALLRDLDEQVPG 224

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           L R+R ++     ++D +I      D ++ +LH+P+QSGS+ +LK M R++T   + + +
Sbjct: 225 LKRIRISSIEASQLTDEVIDVLRRSDKIVRHLHIPLQSGSNTVLKRMRRKYTVEFFAERL 284

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            R+R V P++A++SD IVGFPGET+++F  T + + +  +++   F YS R GTP + M 
Sbjct: 285 ARLREVFPELAVTSDVIVGFPGETEEEFMETYNFIREQRFSELHVFPYSKRTGTPAARMP 344

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSV 438
           +Q+DE  K +R+  L     +    +     GQ++EV+ E+H K E G  +G +     V
Sbjct: 345 DQIDEETKHDRVRRLIALSDQLAKEYASRFEGQVLEVIPEEHDKEEPGMYIGYTDNYLKV 404

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468
              +    +G+++KV+IT        GE V
Sbjct: 405 RFPATEEMVGELVKVKITKAGYPYNEGEFV 434


>gi|78212394|ref|YP_381173.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Synechococcus sp. CC9605]
 gi|123743350|sp|Q3ALB4|MIAB_SYNSC RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|78196853|gb|ABB34618.1| Protein of unknown function UPF0004 [Synechococcus sp. CC9605]
          Length = 464

 Score =  421 bits (1082), Expect = e-115,   Method: Composition-based stats.
 Identities = 177/466 (37%), Positives = 265/466 (56%), Gaps = 25/466 (5%)

Query: 17  IVDQCIVPQR--FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIRE 74
             D    PQR  +++ ++GCQMN  DS RM  +  + GY   ++  DADL++ NTC IR+
Sbjct: 8   ATDATANPQRGSYWITTFGCQMNKADSERMAGILEAMGYREASAELDADLVLYNTCTIRD 67

Query: 75  KAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYY 134
            A +KVYS+LGR    K    +   +L++VVAGCVAQ EGE +LRR P +++V+GPQ   
Sbjct: 68  NAEQKVYSYLGRQAQRK----RSNPNLILVVAGCVAQQEGESLLRRVPELDLVMGPQHAN 123

Query: 135 RLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCV 194
           RL  LL +   G++VV T+       E ++       R   +  ++ +  GC++ CT+CV
Sbjct: 124 RLETLLLQVDSGQQVVATE--DHHILEDITTAR----RDSSICGWVNVIYGCNERCTYCV 177

Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG------EKCTFS 248
           VP  RG E SR    +  E   L   G  EITLLGQN++A  G+ L G       + T +
Sbjct: 178 VPSVRGKEQSRLPQAIKLEMEGLAAQGYKEITLLGQNIDA-YGRDLPGITPEGRRQHTLT 236

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
           DLL+ + +++G+ R+R+ TSHPR  ++ LI A  DL  L  + H+P QSG + +L++M R
Sbjct: 237 DLLHHVHDVEGIERIRFATSHPRYFTERLIDACADLPKLCEHFHIPFQSGDNDVLQAMAR 296

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
            +T   YR+IIDRIR   PD ++S+D IV FPGETD  +R T+DL+++IG+ Q  +  YS
Sbjct: 297 GYTVERYRRIIDRIRERMPDASLSADVIVAFPGETDAQYRRTLDLIEEIGFDQVNTAAYS 356

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGK 427
           PR  TP +N   Q+ E VK ERL  +   +       N    G+  EVL E    K+  +
Sbjct: 357 PRPNTPAANWDNQLPEEVKVERLREINALVERCARKANARYEGRTEEVLAEGINPKDPSQ 416

Query: 428 LVGRSPWLQSVVL-----NSKNHNIGDIIKVRITDVKISTLYGELV 468
           L+GR+   +         +   +  GD+++VRI  V+  +L G  +
Sbjct: 417 LMGRTRTNRLTFFSATGADGHANKAGDLVQVRIDAVRSFSLSGSPL 462


>gi|291461037|ref|ZP_06026579.2| tRNA-I(6)A37 thiotransferase enzyme MiaB [Fusobacterium
           periodonticum ATCC 33693]
 gi|291379315|gb|EFE86833.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Fusobacterium
           periodonticum ATCC 33693]
          Length = 423

 Score =  421 bits (1082), Expect = e-115,   Method: Composition-based stats.
 Identities = 152/434 (35%), Positives = 250/434 (57%), Gaps = 12/434 (2%)

Query: 36  MNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRI 95
           MNV +S +++ +F + GY+     DDAD + LNTC +RE AA +++  LG ++ LK    
Sbjct: 1   MNVNESAKIKKIFQNLGYDVTEETDDADAVFLNTCTVREGAATQIFGKLGELKTLKEK-- 58

Query: 96  KEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYS 155
                 ++ V GC AQ +GEE++R+ PI+++V+G Q   R+P+ +E+    +   +    
Sbjct: 59  ---KGTIIGVTGCFAQEQGEELVRKFPIIDIVMGNQNIGRIPQAIEKIENNESAHEVYTD 115

Query: 156 VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEAR 215
            ED+                 TA ++I  GC+ FCTFC+VPY RG E S  L ++V +  
Sbjct: 116 NEDEL----PPRLDAEFASDQTASISITYGCNNFCTFCIVPYVRGRERSVPLEEIVKDVE 171

Query: 216 KLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSD 275
           + +  G  EI LLGQNVN++     +G+   F+ LL  + +++G   +R+ + HPRD +D
Sbjct: 172 QYVSKGAKEIVLLGQNVNSYGKDFKNGD--NFAKLLEEICKVEGDYIVRFVSPHPRDFTD 229

Query: 276 CLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDF 335
            +I      D +   LHLP+QSGS ++L+ M R +T  +Y  ++D+I+S  PD+A+++D 
Sbjct: 230 DVIDVIAKNDKISKCLHLPLQSGSSQVLRKMRRGYTKEKYLALVDKIKSKIPDVALTADI 289

Query: 336 IVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQ 395
           IVGFPGET++DF  T+D+V+K+ +  ++ F YS R GT  + M  Q+DE+VK ERL  L 
Sbjct: 290 IVGFPGETEEDFLDTVDVVEKVSFDNSYMFMYSIRKGTKAATMDNQIDESVKKERLQRLM 349

Query: 396 KKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVLNSKNHNIGDIIKVR 454
           +   +   + +     +I+ VL+E   K+  + L GR+   + V+        G  + V+
Sbjct: 350 EVQNKCSFNESSKYKDKIVRVLVEGPSKKNKEVLSGRTSTNKIVLFKGDMALKGQFVDVK 409

Query: 455 ITDVKISTLYGELV 468
           I + K  TLYG++V
Sbjct: 410 INECKTWTLYGDIV 423


>gi|255534247|ref|YP_003094618.1| (dimethylallyl)adenosine tRNA methylthiotransferase
           [Flavobacteriaceae bacterium 3519-10]
 gi|255340443|gb|ACU06556.1| tRNA-i(6)A37 methylthiotransferase [Flavobacteriaceae bacterium
           3519-10]
          Length = 508

 Score =  420 bits (1081), Expect = e-115,   Method: Composition-based stats.
 Identities = 173/469 (36%), Positives = 258/469 (55%), Gaps = 23/469 (4%)

Query: 16  QIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREK 75
            I ++    ++ F++SYGCQMN  DS  +  +   QGY    + ++ADLI+LNTC IREK
Sbjct: 39  AIAEKPQNSKKLFLESYGCQMNFSDSEIVASILSKQGYNTTLNHEEADLILLNTCSIREK 98

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135
           A + V   L + +NLK    KE  +L V V GC+A+    + L    +V++VVGP  Y  
Sbjct: 99  AEQTVRMRLSQFKNLK----KERPNLTVGVLGCMAERLKTKFLEEEQLVDLVVGPDAYRD 154

Query: 136 LPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
           LP LL+    G+  ++   S ++ +  ++ V  G     GVTAF+TI  GCD  CTFCVV
Sbjct: 155 LPNLLKETDSGRDAINVILSKDETYADINPVRLG---GNGVTAFVTITRGCDNMCTFCVV 211

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK----------- 244
           P+TRG E SR    +V+E + L +NG  EITLLGQNV+++   G   +K           
Sbjct: 212 PFTRGRERSRDPHSIVEECKTLWENGYKEITLLGQNVDSYLWYGGGAKKDFKNASEMQQL 271

Query: 245 --CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
               F+ LL  ++     +R+R++TS+P DM+  + +     D +  Y+HLPVQSGSDRI
Sbjct: 272 TAIRFAQLLEMVAVAVPEMRIRFSTSNPHDMTVDVFEVMAKHDNICKYVHLPVQSGSDRI 331

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           L+ MNR+HT  EY  +I+R + + P+I+ S D I+GF GET++D + T+ L+ ++ Y   
Sbjct: 332 LEKMNRQHTRAEYLNLINRAKEIVPEISFSQDMIIGFCGETEEDHQLTLSLMREVEYDYG 391

Query: 363 FSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKH 421
           + F YS R GTP    M + V  +VK  RL  +     E          G++ EVLIE  
Sbjct: 392 YMFAYSERPGTPAHRKMEDDVPADVKQRRLAEVIALQGELSRKRMQGYAGRMHEVLIEGT 451

Query: 422 GKEK-GKLVGRSPWLQSVVLNS-KNHNIGDIIKVRITDVKISTLYGELV 468
            K+   +  GR+      V +  ++  +GDI+ V +      TL G  V
Sbjct: 452 SKKNQNQWKGRNSQNAVCVFDKLEDQKLGDIVTVFVHGNTQGTLLGTTV 500


>gi|46199244|ref|YP_004911.1| hypothetical protein TTC0942 [Thermus thermophilus HB27]
 gi|81405796|sp|Q72J39|MIAB_THET2 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|46196869|gb|AAS81284.1| conserved hypothetical protein [Thermus thermophilus HB27]
          Length = 465

 Score =  420 bits (1081), Expect = e-115,   Method: Composition-based stats.
 Identities = 166/443 (37%), Positives = 253/443 (57%), Gaps = 17/443 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R  + +YGCQMN YDS  +     S G+E V+S+++AD +++NTC +R K  EKV S LG
Sbjct: 27  RAHIITYGCQMNEYDSHLVASELVSLGWELVDSVEEADFVLVNTCAVRGKPVEKVRSLLG 86

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           ++R  K         LL+ + GC+AQ +  + + +   V+V++GP     LPE L   + 
Sbjct: 87  QLRKEKER-----RGLLIGMMGCLAQLDEGQQMAKKFGVDVLLGPGALTSLPEAL---KA 138

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            +R  D  +  ED  + +     G      ++A +TI  GC+  CT+C+VP TRG E+SR
Sbjct: 139 NERFFDLTF-REDVLDYIPPPPKG-----ALSAHVTIIRGCNHHCTYCIVPTTRGPEVSR 192

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
               ++ E   L   GV E+TLLGQNVN+  GK   G   +F++LL  +  + G+ R+R+
Sbjct: 193 HPDLILKEIELLKQAGVVEVTLLGQNVNS-YGKDQPGFP-SFAELLRMVGGM-GIPRVRF 249

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
            TSHP + +D +I+A  +   +  Y+HLPVQSGSDR+L+ M R +    Y + I +IR  
Sbjct: 250 LTSHPVNFTDDIIEAIAETPAICRYIHLPVQSGSDRVLRRMAREYRRAHYLERIRKIREA 309

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            PD  +S+D IVGFPGET++DF+ T+ L D++GY QA+ F YSPR GTP     + +   
Sbjct: 310 LPDAVLSTDIIVGFPGETEEDFQETLSLYDEVGYDQAYMFIYSPRPGTPAYKHFQDLPRE 369

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445
           VK ERL+ L +K +E     N   VG+ +EVL+    KE+G + G       V++ +   
Sbjct: 370 VKVERLMRLIEKQKEWSYRRNLEWVGKTVEVLVRGEAKEEGFVQGHDRGNHPVLVPASQA 429

Query: 446 NIGDIIKVRITDVKISTLYGELV 468
            +  + +V I       L+GE+V
Sbjct: 430 PVPGLYQVEIKQATPHLLFGEVV 452


>gi|55981277|ref|YP_144574.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Thermus
           thermophilus HB8]
 gi|81364777|sp|Q5SME9|MIAB_THET8 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|55772690|dbj|BAD71131.1| conserved hypothetical protein [Thermus thermophilus HB8]
          Length = 465

 Score =  420 bits (1081), Expect = e-115,   Method: Composition-based stats.
 Identities = 166/443 (37%), Positives = 253/443 (57%), Gaps = 17/443 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R  + +YGCQMN YDS  +     S G+E V+S+++AD +++NTC +R K  EKV S LG
Sbjct: 27  RAHIITYGCQMNEYDSHLVASELVSLGWELVDSVEEADFVLVNTCAVRGKPVEKVRSLLG 86

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           ++R  K         LL+ + GC+AQ +  + + +   V+V++GP     LPE L   + 
Sbjct: 87  QLRKEKER-----RGLLIGMMGCLAQLDEGQQMAKKFGVDVLLGPGALTSLPEAL---KA 138

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            +R  D  +  ED  + +     G      ++A +TI  GC+  CT+C+VP TRG E+SR
Sbjct: 139 NERFWDLTF-REDVLDYIPPPPKG-----ALSAHVTIIRGCNHHCTYCIVPTTRGPEVSR 192

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
               ++ E   L   GV E+TLLGQNVN+  GK   G   +F++LL  +  + G+ R+R+
Sbjct: 193 HPDLILKEIELLKQAGVVEVTLLGQNVNS-YGKDQPGFP-SFAELLRMVGGM-GIPRVRF 249

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
            TSHP + +D +I+A  +   +  Y+HLPVQSGSDR+L+ M R +    Y + I +IR  
Sbjct: 250 LTSHPVNFTDDIIEAIAETPAICRYIHLPVQSGSDRVLRRMAREYRRAHYLERIRKIREA 309

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            PD  +S+D IVGFPGET++DF+ T+ L D++GY QA+ F YSPR GTP     + +   
Sbjct: 310 LPDAVLSTDIIVGFPGETEEDFQETLSLYDEVGYDQAYMFIYSPRPGTPAYKHFQDLPRE 369

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445
           VK ERL+ L +K +E     N   VG+ +EVL+    KE+G + G       V++ +   
Sbjct: 370 VKVERLMRLIEKQKEWSYRRNLEWVGKTVEVLVRGEAKEEGFVQGHDRGNHPVLVPASQA 429

Query: 446 NIGDIIKVRITDVKISTLYGELV 468
            +  + +V I       L+GE+V
Sbjct: 430 PVPGLYQVEIKQATPHLLFGEVV 452


>gi|331084033|ref|ZP_08333140.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Lachnospiraceae bacterium 6_1_63FAA]
 gi|330402395|gb|EGG81965.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Lachnospiraceae bacterium 6_1_63FAA]
          Length = 491

 Score =  420 bits (1081), Expect = e-115,   Method: Composition-based stats.
 Identities = 160/460 (34%), Positives = 260/460 (56%), Gaps = 14/460 (3%)

Query: 12  HMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCH 71
            +V +  ++   P    + ++GCQMN  DS ++  +    GY  V   ++AD ++ NTC 
Sbjct: 42  QLVKEQSEKLGRPLTANITTFGCQMNARDSEKLVGILERIGYVEVPD-ENADFVIYNTCT 100

Query: 72  IREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVG 129
           +RE A  +VY  LG + +LK    K+   +++ + GC+ Q     E++ +    VN++ G
Sbjct: 101 VRENANLRVYGRLGYLHSLK----KKNPHMMIGLCGCMMQEPQVVEKLKKSYSFVNLIFG 156

Query: 130 PQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKF 189
               Y+  EL+  +    R++   +   DK     + D    RK    + + I  GC+ F
Sbjct: 157 THNIYKFAELVVSSLLSDRMIIDIWKDTDKI----VEDLPVERKYPFKSGVNIMFGCNNF 212

Query: 190 CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSD 249
           C++C+VPY RG E SR+   +V E  +L+ +GV E+ LLGQNVN+  GK LD E  TF+ 
Sbjct: 213 CSYCIVPYVRGRERSRNPKDIVREIERLVKDGVVEVMLLGQNVNS-YGKNLD-EPMTFAQ 270

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
           LL  + +I+GL R+R+ TSHP+D+SD LI+   +   +  +LHLP+QSGS  IL+ MNRR
Sbjct: 271 LLTEIEKIEGLKRIRFMTSHPKDLSDELIEVMKNSKKICKHLHLPLQSGSSDILQKMNRR 330

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369
           +   +Y  ++++IR+  PDI++++D IVGFPGET++DF  T+D+V K+ Y  AF+F YS 
Sbjct: 331 YDKEKYLNLVEKIRTAIPDISLTTDIIVGFPGETEEDFLETVDVVKKVRYDSAFTFIYSK 390

Query: 370 RLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKL 428
           R GTP + M  QV E V  +R   L + ++      +    G+++EVL+E+ + ++K  +
Sbjct: 391 RTGTPAAVMENQVSEGVVKDRFNRLLETVQSIGREMSARDTGKVMEVLVEEQNSQDKHLM 450

Query: 429 VGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            GR      V        IG + +VR+ + +     G  V
Sbjct: 451 TGRLSNNLLVHFEGDTSLIGQLCQVRLDECRGFYYMGTKV 490


>gi|322435958|ref|YP_004218170.1| RNA modification enzyme, MiaB family [Acidobacterium sp. MP5ACTX9]
 gi|321163685|gb|ADW69390.1| RNA modification enzyme, MiaB family [Acidobacterium sp. MP5ACTX9]
          Length = 440

 Score =  420 bits (1081), Expect = e-115,   Method: Composition-based stats.
 Identities = 175/447 (39%), Positives = 269/447 (60%), Gaps = 15/447 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + + F+++++GCQMN +DS ++      QGY +V    +A LI+ NTC IR+KA +KV+ 
Sbjct: 1   MSKTFYIETFGCQMNAHDSEKVVGTLEQQGYAQVQDEAEAGLILYNTCSIRDKAEQKVFH 60

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            L   + ++    +        V GCVAQ EGE+I  R+P V++V G  +Y  LP +LER
Sbjct: 61  RLNEYKKMQGEGKRF------AVIGCVAQQEGEKIFDRAPYVSIVAGSASYRNLPGMLER 114

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
              G + +     ++DK    +       R      ++TI EGCDKFC +CVVPYTRG E
Sbjct: 115 LERGDQRIT---GLDDKKTTETFETPFVARTNQHRGYITIIEGCDKFCAYCVVPYTRGNE 171

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SRS + V++EAR++ D+G  EI LLGQNVN++R     G K +F++LL+++  I G+ R
Sbjct: 172 RSRSAASVMEEARRMADSGYTEIQLLGQNVNSYR--DPSGAK-SFAELLHAVGTIPGIRR 228

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHPRD +  +++       L  ++HLPVQSGS RIL +M R +T   Y + I  +
Sbjct: 229 VRFTTSHPRDFTRDIVEVIDATPTLCDHVHLPVQSGSTRILAAMAREYTREWYLERIAWM 288

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           ++ + DI+++SD IVGFPGETD+D   T  L+D +GY   F+FKYSPR  TP  +M + +
Sbjct: 289 KAAKRDISMTSDIIVGFPGETDEDLEDTATLLDAVGYDAIFAFKYSPRPNTPSVSMADSL 348

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
            + VKA RL  L  + RE Q       +GQ++EV++E H +++ ++VGR+   +++   +
Sbjct: 349 SDEVKAARLQILLDRQREIQRINYQRHIGQVVEVMVEGHNRQRNQVVGRTSQNKTLNFTT 408

Query: 443 KN---HNIGDIIKVRITDVKISTLYGE 466
                  +G    VRIT    ++L GE
Sbjct: 409 AQPIMPALGSYQMVRITQAFPNSLLGE 435


>gi|134098330|ref|YP_001103991.1| (dimethylallyl)adenosine tRNA methylthiotransferase
           [Saccharopolyspora erythraea NRRL 2338]
 gi|291004251|ref|ZP_06562224.1| (dimethylallyl)adenosine tRNA methylthiotransferase
           [Saccharopolyspora erythraea NRRL 2338]
 gi|229890638|sp|A4FAJ1|MIAB_SACEN RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|133910953|emb|CAM01066.1| methylase of isopentenylated A37 derivatives in tRNA
           [Saccharopolyspora erythraea NRRL 2338]
          Length = 491

 Score =  420 bits (1081), Expect = e-115,   Method: Composition-based stats.
 Identities = 162/453 (35%), Positives = 248/453 (54%), Gaps = 19/453 (4%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + + + +++YGCQMNV+DS R+  M    GY R  +  D D++V NTC +RE A  ++Y 
Sbjct: 1   MTRSYQIRTYGCQMNVHDSERLAGMLEDAGYVRAGTDVDPDVVVFNTCAVRENADNRLYG 60

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            LG +R  K+        + + V GC+AQ +  EI++R+P V+VV G      LP LLER
Sbjct: 61  NLGHLRPAKDR----NPGMQIAVGGCLAQKDRGEIVKRAPWVDVVFGTHNLGSLPTLLER 116

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           AR  +          D F           R+   + ++++  GC+  CTFC+VP  RG E
Sbjct: 117 ARHNEEAEVEILESLDVFPSTLPAR----RESAYSGWVSVSVGCNNTCTFCIVPALRGKE 172

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
             R   +++ E + L+  GV E+TLLGQNVNA+  +   G++  F  LL S  EI+GL R
Sbjct: 173 KDRRPGEILSEVQALVSEGVLEVTLLGQNVNAYGVEF--GDRFAFGKLLRSCGEIEGLER 230

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+T+ HPRD +D +I A  +   +   LH+P+QSGSDR+LK M R + +  Y  I+ ++
Sbjct: 231 VRFTSPHPRDFTDDVIAAMAETPNVCHQLHMPLQSGSDRVLKQMRRSYRSQRYLDILRKV 290

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R   PD AI++D IVGFPGET++DF ATM +V +  +A AF+F+YS R GTP + M  Q+
Sbjct: 291 REAMPDAAITTDIIVGFPGETEEDFEATMQVVREARFASAFTFQYSKRPGTPAAEMEGQL 350

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKG---KLVGRSPWLQSV 438
            + V  +R   L +   +         VG+ +E+L+ E  G++     +L GR+   + V
Sbjct: 351 PKEVVQQRYDRLIELQNQISWDVGKELVGRSVELLVAEGEGRKDTETHRLSGRARDGRLV 410

Query: 439 VLN-----SKNHNIGDIIKVRITDVKISTLYGE 466
                         GD++   IT      L  +
Sbjct: 411 HFTPVGAVDGQVRPGDVVHTTITRAAPHHLVAD 443


>gi|325263898|ref|ZP_08130631.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Clostridium sp. D5]
 gi|324030936|gb|EGB92218.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Clostridium sp. D5]
          Length = 481

 Score =  420 bits (1081), Expect = e-115,   Method: Composition-based stats.
 Identities = 158/459 (34%), Positives = 259/459 (56%), Gaps = 15/459 (3%)

Query: 14  VSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIR 73
           V +  ++   P  F V ++GCQMN  DS ++  +    GY+     + AD ++ NTC +R
Sbjct: 34  VREQAEKAGHPLTFCVVTFGCQMNARDSEKLVGILEQIGYQEETDEEKADFVIYNTCTVR 93

Query: 74  EKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQ 131
           E A ++VY  LG++  +K    K+   +L+ + GC+ Q     E++ +    V+++ G  
Sbjct: 94  ENANQRVYGRLGQLNRVK----KKNPHMLIGLCGCMMQEPEVVEKLKKSYRFVDLIFGTH 149

Query: 132 TYYRLPELLE-RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190
             Y+  EL+  R   G+ V+D     +   E L        RK    + + I  GC+ FC
Sbjct: 150 NIYKFAELITTRLESGRMVIDIWKDTDKIVEDLP-----AERKYAFKSGVNIMFGCNNFC 204

Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDL 250
           ++C+VPY RG E SR+   ++ E  +L+ +GV E+ LLGQNVN+  GK L+ +  +F+ L
Sbjct: 205 SYCIVPYVRGRERSRNPLDIIREIEELVADGVIEVMLLGQNVNS-YGKTLE-QPMSFAQL 262

Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
           L  + +I+GL R+R+ TSHP+D+SD LI+  G  + +  +LHLP+QSGS RIL+ MNRR+
Sbjct: 263 LQEIEKIEGLRRIRFMTSHPKDLSDELIEVMGRSEKICRHLHLPIQSGSSRILEKMNRRY 322

Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370
           T   Y +++ +IR+  PDI++++D IVGFPGET++DF+ T+D+V K+ Y  AF+F YS R
Sbjct: 323 TKEHYLELVGKIRASVPDISLTTDIIVGFPGETEEDFQETLDIVRKVRYDSAFTFIYSKR 382

Query: 371 LGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLV 429
            GTP + M +QV E+V  +R   L K+++               +VL+E  +  +   + 
Sbjct: 383 TGTPAAVMEDQVPEDVVKDRFDRLLKEVQSISGEVCSVYTDTTQDVLVETINDHDPALVT 442

Query: 430 GRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           GR      V        +G I+ V + + +     GE++
Sbjct: 443 GRMSNNLLVHFPGDESLVGKIVSVHLKECRGFYYIGEML 481


>gi|87302974|ref|ZP_01085778.1| hypothetical protein WH5701_07366 [Synechococcus sp. WH 5701]
 gi|87282470|gb|EAQ74429.1| hypothetical protein WH5701_07366 [Synechococcus sp. WH 5701]
          Length = 474

 Score =  420 bits (1080), Expect = e-115,   Method: Composition-based stats.
 Identities = 173/458 (37%), Positives = 258/458 (56%), Gaps = 30/458 (6%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           +++ ++GCQMN  DS RM  +    GY+  +    ADL++ NTC IR+ A +KVYS+LGR
Sbjct: 24  YWITTFGCQMNKADSERMAGILEGMGYQPGSDEHSADLVLYNTCTIRDNAEQKVYSYLGR 83

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
               K    +    L +VVAGCVAQ EGE +LRR P +++V+GPQ   RL  LLE+   G
Sbjct: 84  QAQRK----RTNPHLTLVVAGCVAQQEGESLLRRVPELDLVMGPQHANRLDTLLEQVASG 139

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           ++VV T        E ++       R   V A++ +  GC++ CT+CVVP  RG E SRS
Sbjct: 140 QQVVATGE--HHILEDITTAR----RDSQVCAWVNVIYGCNERCTYCVVPSVRGKEQSRS 193

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG------EKCTFSDLLYSLSEIKGL 260
              +  E   L + G  EITLLGQN++A  G+ L G       + T +DLL+ + ++ G+
Sbjct: 194 PGAIRLEMEGLAERGFKEITLLGQNIDA-YGRDLPGITPQGRRQHTLTDLLHHVHDVAGI 252

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+ TSHPR  ++ LI A  +L  L  + H+P QSG D +LK+M R +T   YR+I++
Sbjct: 253 ERIRFATSHPRYFTERLIDACAELPKLCEHFHIPFQSGDDDVLKAMARGYTVDRYRRILE 312

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           RIR   PD AIS+D IV FPGE+D  +R T+ L++ IG+ Q  +  YSPR  TP ++  +
Sbjct: 313 RIRERMPDAAISADVIVAFPGESDAQYRRTLALIEAIGFDQVNTAAYSPRPNTPAADWPD 372

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVV 439
           Q+ E VK ERL  L   +       ++  +G+I +VL+E    ++ G+ +GR+   +   
Sbjct: 373 QLPEAVKVERLQELNALVERTARQRSERYLGRIEQVLVEGTNPRDPGQRMGRTRTNRLTF 432

Query: 440 LN------------SKNHNIGDIIKVRITDVKISTLYG 465
                               GD++ VRI  V+  +L G
Sbjct: 433 FPDLAPSRSPAELEGGIIQPGDLVNVRIEKVRAFSLTG 470


>gi|305666326|ref|YP_003862613.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Maribacter sp. HTCC2170]
 gi|88708318|gb|EAR00555.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Maribacter sp. HTCC2170]
          Length = 481

 Score =  420 bits (1080), Expect = e-115,   Method: Composition-based stats.
 Identities = 167/459 (36%), Positives = 260/459 (56%), Gaps = 22/459 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +  F++SYGC MN  DS  +  +  ++G+     ++DADL+++NTC IREKA   V   L
Sbjct: 24  RNLFIESYGCAMNFSDSEIVASILANEGFNTTQKLEDADLVLVNTCSIREKAELTVRKRL 83

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            +   +K    K+   + V V GC+A+    ++L    IV++VVGP  Y  LP L++   
Sbjct: 84  EKYNAIK----KKRPHMKVGVLGCMAERLKSKLLEEEKIVDMVVGPDAYKDLPNLIQEID 139

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G+  V+   S ++ +  ++ V        GV+A ++I  GCD  CTFCVVP+TRG E S
Sbjct: 140 EGREAVNVILSKDETYGDIAPVRLN---TNGVSALVSITRGCDNMCTFCVVPFTRGRERS 196

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNA--WRGKGL--DGEKCT---------FSDLL 251
           R    ++ E   L + G  EITLLGQNV++  W G GL  D +K +         F++LL
Sbjct: 197 RDSQSIIAEVNDLWNKGFKEITLLGQNVDSYLWYGGGLKKDFDKASEMQIATAVDFANLL 256

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
             ++E +  + +R++TS+P+DMS  +IK     D +  ++HLPVQSGS+RILK+MNR HT
Sbjct: 257 DMVAEAQPKMWIRFSTSNPQDMSLDVIKTMAKHDNICNHIHLPVQSGSNRILKAMNRLHT 316

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
             EY ++ID IR + P+IA+S D I GFP ET++D + T+ ++D++ Y   + + YS R 
Sbjct: 317 IEEYFELIDNIRKIIPEIALSHDMISGFPTETEEDHQDTLAVLDRVKYDYGYMYSYSERP 376

Query: 372 GTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLV 429
           GT  +  M + + E  K  RL  +    RE      +  +G + E+LIE    K++    
Sbjct: 377 GTMAARKMDDDIPEKTKQRRLSEIIALQREHCQFRTEKHLGSVQEILIEGTSKKDETMWK 436

Query: 430 GRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           GR+      V   +N+ +GD + V++ D   +TL GE V
Sbjct: 437 GRNSQNVVAVFPKENYKLGDFVDVKMNDCTSATLIGEAV 475


>gi|296129399|ref|YP_003636649.1| RNA modification enzyme, MiaB family [Cellulomonas flavigena DSM
           20109]
 gi|296021214|gb|ADG74450.1| RNA modification enzyme, MiaB family [Cellulomonas flavigena DSM
           20109]
          Length = 538

 Score =  420 bits (1080), Expect = e-115,   Method: Composition-based stats.
 Identities = 166/457 (36%), Positives = 255/457 (55%), Gaps = 26/457 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADL----IVLNTCHIREKAAEKVY 81
            + VK+ GCQMNV+DS  M  M    GY   +  D A      +V+NTC +RE AA+K+Y
Sbjct: 30  TYHVKTLGCQMNVHDSEHMAGMLEQAGYVPADPADAAADDVDVLVINTCAVRENAADKLY 89

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR+   K SR    G + + V GC+AQ +   I+ R+P V+VV G      LP LLE
Sbjct: 90  GNLGRLAGTKRSRA---GGMQIAVGGCLAQKDRAGIVERAPWVDVVFGTHNLDVLPTLLE 146

Query: 142 RARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           RAR      V+ + S++     L        R+     +++I  GC+  CTFC+VP+ RG
Sbjct: 147 RARHNAAAQVEIEESLKVFPSTLPT-----RRESVYAGWVSISVGCNNTCTFCIVPHLRG 201

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E  R    V+ E   L+  G  E+TLLGQNVN+  G G  G++  F  LL ++  + GL
Sbjct: 202 KERDRRPGDVLAEVEALVATGAIEVTLLGQNVNS-YGVGF-GDRHAFGKLLRAVGAVPGL 259

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+T+ HP   +D +I+A      +MP LH+P+QSGSDR+L++M R + A  +  I++
Sbjct: 260 ERVRFTSPHPAAFTDDVIEAMAATPTVMPQLHMPLQSGSDRVLRAMRRSYRADRFLGILE 319

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           R+R+  P  AI++D IVGFPGET++DFR T+ +V+   ++ AF+F+YSPR GTP +++ +
Sbjct: 320 RVRAAIPHAAITTDVIVGFPGETEEDFRETLRVVEASRFSSAFTFQYSPRPGTPAADLPD 379

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKG---KLVGRSPWLQ 436
           Q+ + V  ER   L           N A VG+ ++VL+ +  G++ G   ++ GR+   +
Sbjct: 380 QLPKAVVQERYERLVALQERISAEENAAQVGRTVDVLVAQGEGRKDGATARISGRAADNR 439

Query: 437 SVVL-------NSKNHNIGDIIKVRITDVKISTLYGE 466
            V L        +     GD++ V++T      L  +
Sbjct: 440 LVHLALPVGLDPADAPRPGDLVTVQVTHGAPHHLVAD 476


>gi|126291872|ref|XP_001381790.1| PREDICTED: hypothetical protein [Monodelphis domestica]
          Length = 653

 Score =  420 bits (1080), Expect = e-115,   Method: Composition-based stats.
 Identities = 157/476 (32%), Positives = 248/476 (52%), Gaps = 38/476 (7%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ ++++YGCQMNV D+     +    GY R N++ +AD+I+L TC IREKA + +++ L
Sbjct: 166 RKVYLETYGCQMNVNDAEIAWAILQKSGYLRTNTLHEADVILLVTCSIREKAEQAIWNRL 225

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R++ +K  R++    L + + GC+A+   EEIL R  +V++V GP  Y  LP LL  A 
Sbjct: 226 KRLKFIKARRLRSQVPLRIGILGCMAERLKEEILHREKLVDIVAGPDAYRDLPRLLSLAD 285

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G+R  +   S+E+ +  +  V          +AF++I  GCD  C++C+VP+TRG E S
Sbjct: 286 SGQRSANVLLSLEETYADIMPVQTS---SNATSAFVSIMRGCDNMCSYCIVPFTRGRERS 342

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG---------------------LDGE 243
           R ++ +++E +KL   G+ E+TLLGQNVN+++ K                          
Sbjct: 343 RPIASILEEVKKLSQQGLKEVTLLGQNVNSYQDKSEMQFNNAMPTHLSRGFSENYKTKKG 402

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
              F+DLL  +S +   +R+R+T+ HP+D  D +++   + + +   +HLP QSGS+R+L
Sbjct: 403 GLRFADLLDQVSRVDPEMRIRFTSPHPKDFPDEVLQLIQERNNICKQIHLPAQSGSNRVL 462

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           + M R +T   Y  +I  IR     + +SSDFI GF GET+DD   T+ L+ ++ Y   F
Sbjct: 463 ELMRRGYTREAYLDLIHHIRESVSGVNLSSDFIAGFCGETEDDHLQTLSLLQEVRYNVGF 522

Query: 364 SFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422
            F YS R  T     + + V E VK  RL  L    RE     N A VG +  +L+E   
Sbjct: 523 LFAYSMRQKTRAYHRLQDDVPEEVKQRRLAELIAAFREGATEANMAMVGHMQLILVEGPS 582

Query: 423 KEK-GKLVGRSPWLQSVVLNSKN------------HNIGDIIKVRITDVKISTLYG 465
           K    +L GR+     V+                    GD + V+IT     +L G
Sbjct: 583 KRSTTELCGRNDGNIRVIFPDIEMGDGIDCRGLIRAQPGDYVLVKITSSNSQSLKG 638


>gi|290956967|ref|YP_003488149.1| radical SAM protein [Streptomyces scabiei 87.22]
 gi|260646493|emb|CBG69590.1| putative Radical SAM protein [Streptomyces scabiei 87.22]
          Length = 483

 Score =  420 bits (1080), Expect = e-115,   Method: Composition-based stats.
 Identities = 165/441 (37%), Positives = 247/441 (56%), Gaps = 21/441 (4%)

Query: 36  MNVYDSLRMEDMFFSQGYERVNS---MDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92
           MNV+DS R+  +    GY R        +AD++V NTC +RE A  ++Y  LGR+  +K 
Sbjct: 1   MNVHDSERLSGLLEDAGYVRAPEDAGEGNADVVVFNTCAVRENADNRLYGNLGRLAPMKT 60

Query: 93  SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR-FGKRVVD 151
           +R      + + V GC+AQ + + I++++P V+VV G     +LP LLERAR   +  V+
Sbjct: 61  AR----PGMQIAVGGCLAQKDRDTIVKKAPWVDVVFGTHNIGKLPVLLERARVQDEAQVE 116

Query: 152 TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVV 211
              S+E     L        R+    A+++I  GC+  CTFC+VP  RG E  R    ++
Sbjct: 117 IAESLEAFPSTLPT-----RRESAYAAWVSISVGCNNTCTFCIVPALRGKEKDRRTGDIL 171

Query: 212 DEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPR 271
            E   L+  GV EITLLGQNVNA  G  + G++  FS LL +  +I+GL R+R+T+ HPR
Sbjct: 172 AEIEALVAEGVSEITLLGQNVNA-YGSDI-GDREAFSKLLRACGKIEGLERVRFTSPHPR 229

Query: 272 DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAI 331
           D +D +I A  +   +MP LH+P+QSGSD +LK+M R +    Y  II+++R+  P  AI
Sbjct: 230 DFTDDVIAAMAETPNVMPQLHMPLQSGSDTVLKAMRRSYRQERYLGIIEKVRASIPHAAI 289

Query: 332 SSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERL 391
           ++D IVGFPGET++DF  TM +V +  + QAF+F+YS R GTP + M  Q+ + V   R 
Sbjct: 290 TTDIIVGFPGETEEDFEQTMHVVREARFTQAFTFQYSKRPGTPAATMENQIPKQVVQARY 349

Query: 392 LCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKG---KLVGRSPWLQSVVL--NSKNH 445
             L     E     N   VG+ +E+++ E  G++ G   +L GR+   + V      +  
Sbjct: 350 ERLVALQEEISWDENKKQVGRTLELMVAEGEGRKDGATHRLSGRAADNRLVHFTKPDQEV 409

Query: 446 NIGDIIKVRITDVKISTLYGE 466
             GD++ V IT      L  E
Sbjct: 410 RPGDVVTVEITYAAPHHLLAE 430


>gi|221194392|ref|ZP_03567449.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Atopobium rimae ATCC
           49626]
 gi|221185296|gb|EEE17686.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Atopobium rimae ATCC
           49626]
          Length = 455

 Score =  420 bits (1079), Expect = e-115,   Method: Composition-based stats.
 Identities = 167/456 (36%), Positives = 253/456 (55%), Gaps = 18/456 (3%)

Query: 20  QCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEK 79
           + +V + + +K++GCQMN++DS R+  +    G   V S DDAD+++  TC +RE A ++
Sbjct: 5   EELVGKTYHIKTFGCQMNLHDSERVRGLLDVCGCNEVESTDDADIVIFMTCSVRENADQR 64

Query: 80  VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL 139
           +Y   G+   + ++     G  +V + GC+AQ +GE + ++ P V+VV G      +P L
Sbjct: 65  LY---GQASAMVSAPTPPSGKRVVAIGGCIAQRDGEALKKKVPAVDVVFGTSALASVPSL 121

Query: 140 LERARFGKRVVDTDYSVEDKFERLS--IVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197
           L  A       D D    D  E       D   +R +   A++ I  GC+ FCT+C+VPY
Sbjct: 122 LSAAFAD----DDDSVKVDTSEEHKGFSTDLPSHRDQVFHAWVPIMTGCNNFCTYCIVPY 177

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257
            RG E SR+   VV E  +L+ +GV EITLLGQNVN+  G+ L G    F++LL ++ + 
Sbjct: 178 VRGRERSRTFEAVVGECERLVADGVREITLLGQNVNS-YGRDLYGTP-RFAELLRAVGK- 234

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
            G+ RLR+T+S+P+D++D  I A  +   +MP+LHL VQSGS RILK MNR +T  EY  
Sbjct: 235 TGIERLRFTSSNPKDLTDETIAAMKETPAVMPHLHLAVQSGSTRILKKMNRSYTREEYLD 294

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
           ++ R+++  PDIA S+D IVGFPGET++DF  T+ LV +  Y+ A++F YS R GTP + 
Sbjct: 295 LVHRLKAAMPDIAFSTDIIVGFPGETEEDFEQTLSLVKEAAYSSAYTFIYSKRPGTPAAK 354

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQ 436
             +     V  ER   L   + +Q    N   +   + VL+E   K   + +VG S   Q
Sbjct: 355 FEDNTSHEVIQERFNRLTDLVAKQAFEANQKDLHTTVSVLVENTSKRDNRVMVGHSEKNQ 414

Query: 437 SVVLNSKN-----HNIGDIIKVRITDVKISTLYGEL 467
           +V             IG I+ V +   +   L G L
Sbjct: 415 TVHFVLPEGHVSDDYIGKIVDVYVEKARTWYLKGTL 450


>gi|212638682|ref|YP_002315202.1| 2-methylthioadenine synthetase [Anoxybacillus flavithermus WK1]
 gi|212560162|gb|ACJ33217.1| 2-methylthioadenine synthetase [Anoxybacillus flavithermus WK1]
          Length = 467

 Score =  420 bits (1079), Expect = e-115,   Method: Composition-based stats.
 Identities = 144/462 (31%), Positives = 242/462 (52%), Gaps = 22/462 (4%)

Query: 13  MVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHI 72
           M   + +   +P      + GC++N Y++  +  +F   GYER +    AD+ V+NTC +
Sbjct: 8   MNGNLSEVIYMP-TVAFHTLGCKVNHYETEAIWQLFKQAGYERKDFESHADVYVINTCTV 66

Query: 73  REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT 132
                +K    + R        ++   D +V V GC AQ    E++   P V++V+G Q 
Sbjct: 67  TNTGDKKSRQVIRRA-------VRRNPDAVVCVTGCYAQTSPAEVMA-IPGVDIVIGTQD 118

Query: 133 YYRLPELLERARFGKRVVDTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190
             ++ E +E+ +  ++ ++   ++     +E L +            A L IQEGC+ FC
Sbjct: 119 RGKILEYIEQFKQQRQPINGVRNIMKTRVYEELDVP----AFTDRTRASLKIQEGCNNFC 174

Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDL 250
           TFC++P+ RG+  SR   +V+ +A++L+D G  EI L G +     G G D +   F+ L
Sbjct: 175 TFCIIPWARGLMRSRDPKEVIRQAQQLVDAGYKEIVLTGIHTG---GYGEDMKDYNFAML 231

Query: 251 LYSLSE-IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
           L  + E +KGL RLR ++     ++D +I      D ++ +LH+P+QSGS+ +LK M R+
Sbjct: 232 LRDMDEQVKGLKRLRISSIEASQITDEVIDVLRQSDKIVRHLHIPLQSGSNAVLKRMRRK 291

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369
           +T   + + + R+R V PD+A++SD IVGFPGET+++F  T + + +  +++   F YS 
Sbjct: 292 YTTEFFAERLARLREVFPDLAVTSDVIVGFPGETEEEFMETYEFIREQRFSELHVFPYSK 351

Query: 370 RLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK---G 426
           R GTP + M +QVDE VK ER+  L     +    +     GQ++EV+ E+  KE    G
Sbjct: 352 RTGTPAARMPDQVDEEVKNERVHRLITLSDQLAKEYASKFEGQVLEVIPEELYKEDPASG 411

Query: 427 KLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
             VG +     V   +    +G ++KV+IT        GE V
Sbjct: 412 LYVGYTDNYLKVKFPATEEMVGQLVKVKITKAGYPYNEGEFV 453


>gi|62897049|dbj|BAD96465.1| CDK5 regulatory subunit associated protein 1 isoform a variant
           [Homo sapiens]
          Length = 586

 Score =  420 bits (1079), Expect = e-115,   Method: Composition-based stats.
 Identities = 155/488 (31%), Positives = 257/488 (52%), Gaps = 40/488 (8%)

Query: 17  IVDQCI-VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREK 75
           ++D+ +   ++ ++++YGCQMNV D+     +    GY R +++ +AD+I+L TC IREK
Sbjct: 91  MMDELLGRQRKVYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCSIREK 150

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135
           A + +++ L +++ LK  R +    L + + GC+A+   EEIL R  +V+++ GP  Y  
Sbjct: 151 AEQTIWNRLHQLKALKTRRPRSRVPLRIGILGCMAERLKEEILNREKMVDILAGPDAYRD 210

Query: 136 LPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
           LP LL  A  G++  +   S+++ +  +  V          +AF++I  GCD  C++C+V
Sbjct: 211 LPRLLAVAESGQQAANVLLSLDETYADVMPVQTS---ASATSAFVSIMRGCDNMCSYCIV 267

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG---------------KGL 240
           P+TRG E SR ++ +++E +KL + G+ E+TLLGQNVN++R                +G 
Sbjct: 268 PFTRGRERSRPIASILEEVKKLSEQGLKEVTLLGQNVNSFRDNSEVQFNSAVPTNLSRGF 327

Query: 241 DGEKCT------FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP 294
                T      F+ LL  +S +   +R+R+T+ HP+D  D +++   + D +   +HLP
Sbjct: 328 TTNYKTKQGGLRFAHLLDQVSRVDPEMRIRFTSPHPKDFPDEVLQLIHERDNICKQIHLP 387

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
            QSGS R+L++M R ++   Y +++  IR   P +++SSDFI GF GET++D   T+ L+
Sbjct: 388 AQSGSSRVLEAMRRGYSREAYVELVHHIRESIPGVSLSSDFIAGFCGETEEDHVQTVSLL 447

Query: 355 DKIGYAQAFSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQI 413
            ++ Y   F F YS R  T     + + V E VK  RL  L    RE+    N   VG  
Sbjct: 448 REVQYNMGFLFAYSMRQ-TRAYHRLKDDVPEEVKLRRLEELITIFREEATKANQTSVGCT 506

Query: 414 IEVLIEKHGKEKGK-LVGRSPWLQSVVLNSKN------------HNIGDIIKVRITDVKI 460
             VL+E   K     L GR+     V+                    GD + V+IT    
Sbjct: 507 QLVLVEGLSKRSATDLCGRNDGNLKVIFPDAEMEDVNNPGLRVRAQPGDYVLVKITSASS 566

Query: 461 STLYGELV 468
            TL G ++
Sbjct: 567 QTLRGHVL 574


>gi|320534666|ref|ZP_08035108.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Actinomyces sp. oral
           taxon 171 str. F0337]
 gi|320133122|gb|EFW25628.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Actinomyces sp. oral
           taxon 171 str. F0337]
          Length = 495

 Score =  420 bits (1079), Expect = e-115,   Method: Composition-based stats.
 Identities = 163/471 (34%), Positives = 263/471 (55%), Gaps = 39/471 (8%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDA------------DLIVLNTCH 71
           P+ + V++ GCQMNV+DS  M  +    GY RV  + +A            D++++NTC 
Sbjct: 18  PRTYHVRTLGCQMNVHDSEHMAGLLERAGYLRVEDVPEAAARATDAGDGGADVVIINTCS 77

Query: 72  IREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ 131
           +RE AA +++  LG++  +K    +E   + + VAGC+AQ  GE I+ R+P V+VV G  
Sbjct: 78  VRENAATRLFGNLGQLAAVK----RERPGMQIAVAGCLAQQMGEGIVDRAPWVDVVFGTH 133

Query: 132 TYYRLPELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190
               LP LLERAR      V+ + S++     L        R+    A+++I  GC+  C
Sbjct: 134 NLDVLPALLERARHNSAAAVELEESLKVFPSTLPT-----RRESSYAAWVSIAVGCNNTC 188

Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDL 250
           TFC+VP  RG +  R    V+ E   +   G  E+TLLGQNVN+  G G  G++  F+ L
Sbjct: 189 TFCIVPSLRGKQRDRRPGDVLAEVEAVAAQGAIEVTLLGQNVNS-YGVGF-GDRGAFAKL 246

Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
           L +   ++G+ R+R+T+ HP   +D +I+A    + +MP LH+P+QSGSDR+L++M R +
Sbjct: 247 LRATGSVEGIERVRFTSPHPAAFTDDVIEAMAFTEAVMPSLHMPLQSGSDRVLRAMRRSY 306

Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370
               +  I+D++R V P+ AI++D IVGFPGET++DF+AT+D+V++  +A A++F+YSPR
Sbjct: 307 RTQRFLGILDKVRDVMPEAAITTDIIVGFPGETEEDFQATLDVVEQARFASAYTFEYSPR 366

Query: 371 LGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKG--- 426
            GTP ++  +QV   V  +R   L   +R      N+   G+++EVL+ E  G+      
Sbjct: 367 PGTPAADRDDQVPVEVVKDRYRRLDALVRRIAHEENERQEGRVVEVLVAEGEGRRDSVTA 426

Query: 427 KLVGRSPWLQSVVL-----------NSKNHNIGDIIKVRITDVKISTLYGE 466
           ++ GR+   + V +                  GD++ VR+T      L  +
Sbjct: 427 RISGRAADNRLVHVALPEGLAEDDYAGGAPRPGDMVSVRVTHGAPHNLIAD 477


>gi|210612282|ref|ZP_03289230.1| hypothetical protein CLONEX_01431 [Clostridium nexile DSM 1787]
 gi|210151656|gb|EEA82663.1| hypothetical protein CLONEX_01431 [Clostridium nexile DSM 1787]
          Length = 440

 Score =  420 bits (1079), Expect = e-115,   Method: Composition-based stats.
 Identities = 143/448 (31%), Positives = 226/448 (50%), Gaps = 16/448 (3%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
               S GC  N+ D+  M  +  S+G++ V+S + AD+IV+NTC     A E+    +  
Sbjct: 3   ILFVSLGCDKNLVDTEVMLGLLASRGHQMVDSEEIADVIVINTCCFIHDAKEESIQTILE 62

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           +   K    K G    ++V GC+AQ   +EI+     V+ V+G  +Y ++ E ++ A  G
Sbjct: 63  MAEYK----KAGSCKALIVTGCLAQRYKQEIIDEIEEVDAVLGTTSYDKIVEAIDEALAG 118

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
              V+    + D      +         G  A+L I EGCDK CT+C++P  RG   S  
Sbjct: 119 HTSVE----MTDIDALPLVESKRLVTTGGHFAYLKIAEGCDKHCTYCIIPKIRGNFRSVP 174

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
           + +++ EA  L+  GV EI L+ Q      GK L GEK +   LL  L +I GL  +R  
Sbjct: 175 IERLLKEAEDLVAQGVKEIILVAQETT-LYGKDLYGEK-SLHKLLRELCKISGLRWIRIL 232

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
             +P +++D LI+   + D +  YL LP+Q  SD ILK M RR +  +  +II ++R   
Sbjct: 233 YCYPEEITDELIQVIKEEDKICNYLDLPIQHASDGILKRMGRRTSKEQLVEIIGKLRKEI 292

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           PDIAI +  I GFPGET +     M+ VD++ + +   F YSP   TP + M +Q+ E+V
Sbjct: 293 PDIAIRTTLITGFPGETQEQHEELMEFVDEMEFDRLGVFTYSPEEDTPAAVMPDQIPEDV 352

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVLNS 442
           K +R   L +  +E      +  +G+ + V+IE    ++   VGR+    P +  ++   
Sbjct: 353 KEDRQAELMELQQEIAFDLAEEMIGREVLVMIEGKVADENAYVGRTYKDAPNVDGLIFVE 412

Query: 443 KNHNI--GDIIKVRITDVKISTLYGELV 468
               +  GD  +VRIT      L GE++
Sbjct: 413 SEEELMSGDFARVRITGALEYDLMGEII 440


>gi|307564743|ref|ZP_07627271.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella amnii CRIS
           21A-A]
 gi|307346465|gb|EFN91774.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella amnii CRIS
           21A-A]
          Length = 442

 Score =  420 bits (1079), Expect = e-115,   Method: Composition-based stats.
 Identities = 156/450 (34%), Positives = 255/450 (56%), Gaps = 15/450 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ ++++YGCQMNV DS  +  +    GY+     DDAD I +NTC IRE A  K+Y+ L
Sbjct: 2   KKLYIETYGCQMNVADSEVVASVMKMAGYDVCEKEDDADAIFINTCSIRENAENKIYNRL 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             +   K      G DL++ V GC+A+   ++++      N+V GP +Y  LP+++ +  
Sbjct: 62  ESLHAEKRK----GRDLILGVLGCMAERVRDDLIDNH-HANLVCGPDSYLNLPDMIAQCE 116

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G    D + S  + +  +     G N+  G   F++I  GC+ FC +C+VP+TRG E S
Sbjct: 117 NGNNACDIELSTTETYRNIIPQRIGGNKVSG---FVSIMRGCNNFCHYCIVPFTRGRERS 173

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC----TFSDLLYSLSEIKGL 260
           R +  ++ E   L + G  E+TLLGQNVN+  G   +G++     +F++LL  +++    
Sbjct: 174 RDVESILQEVNDLKERGFKEVTLLGQNVNS-YGLLPNGKRPKNGTSFAELLQKVAQSVPN 232

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
           +R+R+TTS+P DM++ ++      D L  ++H P QSGS+ +LK MNR++T  EY + + 
Sbjct: 233 MRVRFTTSNPEDMTEDILHVVAQEDNLCNHIHFPAQSGSNTVLKDMNRKYTREEYLEKVA 292

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN-ML 379
            IRS+ P+  +++D  VG+  E+ +D   T+DLV ++G+  AF FKYS R GT  +  + 
Sbjct: 293 AIRSIIPNCGLTTDIFVGYHNESIEDHHQTLDLVREVGFDSAFMFKYSERPGTYAAKHLP 352

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSV 438
           + V E  K  RL  L     +     N    G+  ++LIE+ GK    +L+GR+P  ++V
Sbjct: 353 DNVSEQEKIRRLNELIHLQTQISAEQNKKDEGKEFDILIERFGKRSHDQLMGRNPQNKAV 412

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           V+    H+IG+ + VRI     +TL GE V
Sbjct: 413 VIPKGKHHIGETVHVRIISSTSATLIGEEV 442


>gi|229092810|ref|ZP_04223948.1| hypothetical protein bcere0021_35610 [Bacillus cereus Rock3-42]
 gi|228690608|gb|EEL44389.1| hypothetical protein bcere0021_35610 [Bacillus cereus Rock3-42]
          Length = 457

 Score =  420 bits (1079), Expect = e-115,   Method: Composition-based stats.
 Identities = 168/405 (41%), Positives = 247/405 (60%), Gaps = 14/405 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
             ++F++++YGCQMN +D+  M  +F + GYE   S +DAD+++LNTC IRE A  KV+ 
Sbjct: 64  TGRKFYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFG 123

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELL 140
            LG ++ LK    +   DLL+ V GC++Q E    +I++++  V++V G    +RLP +L
Sbjct: 124 ELGHLKALK----RRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYIL 179

Query: 141 ERARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           + A F K  V   +S E D  E L  V     R+  + A++ I  GCDKFCT+C+VPYTR
Sbjct: 180 KDAMFSKETVVEVWSKEGDVIENLPKV-----RRGDIKAWVNIMYGCDKFCTYCIVPYTR 234

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G E SR    ++ E R L  NG  EITLLGQNVNA  GK  +  +    DL+  L ++  
Sbjct: 235 GKERSRRPEDIIQEIRHLAANGYKEITLLGQNVNA-YGKDFEDIEYGLGDLMDELRKVD- 292

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           + R+R+TTSHPRD  D LI+  G    L+ ++HLPVQSGS  +LK M R+++   Y +++
Sbjct: 293 IARIRFTTSHPRDFDDHLIEVLGKGGNLVEHIHLPVQSGSTEMLKIMARKYSREHYLELV 352

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            +I+   P+  +++D IVGFP ETD+ F  TM L  ++G+  AF+F YSPR GTP + M 
Sbjct: 353 RKIKEAIPNAVLTTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMK 412

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE 424
           + V   VK ERL  L   + +  +  ND   GQI+EVL++   K+
Sbjct: 413 DNVPMEVKKERLQRLNALVNKLAIEKNDRYKGQIVEVLVDGESKK 457


>gi|150026019|ref|YP_001296845.1| hypothetical protein FP1979 [Flavobacterium psychrophilum JIP02/86]
 gi|229890536|sp|A6H119|MIAB_FLAPJ RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|149772560|emb|CAL44043.1| Protein of unknown function [Flavobacterium psychrophilum JIP02/86]
          Length = 481

 Score =  420 bits (1079), Expect = e-115,   Method: Composition-based stats.
 Identities = 161/459 (35%), Positives = 251/459 (54%), Gaps = 22/459 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F++SYGC MN  DS  +  +    GY   N +++ADL+++NTC IR+KA + +   L
Sbjct: 24  KKLFIESYGCAMNFSDSEIVASILSGNGYNTTNVLEEADLVLVNTCSIRDKAEQTIRKRL 83

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            +   +K    +    + V V GC+A+   ++ L    IV++VVGP  Y  LP LL    
Sbjct: 84  EKYNAVK----RINPKMKVGVLGCMAERLKDKFLEEEKIVDLVVGPDAYKDLPNLLNEVE 139

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G+  ++   S ++ +  +S V        G+TA + I  GCD  CTFCVVP+TRG E S
Sbjct: 140 EGRDAINVILSKDETYGDISPVRLM---SNGITALVAITRGCDNMCTFCVVPFTRGRERS 196

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNA--WRGKGLDGEKC-----------TFSDLL 251
           R    ++ E + L   G  EITLLGQNV++  W G GL  +              F  LL
Sbjct: 197 REPQSIMAEIQDLWHKGFKEITLLGQNVDSYLWYGGGLKKDFTNASEIQKATAVDFDQLL 256

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
             ++     +R+R++TS+P+DM + ++        +  ++HLPVQSGS+RILK MNR HT
Sbjct: 257 EMVAVGFPKMRIRFSTSNPQDMHESILHVMAKHSNICKHIHLPVQSGSNRILKEMNRLHT 316

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
             EY  +ID+IR++ P+ +IS D I GFP ET++D + T+ L+  + Y   + + YS R 
Sbjct: 317 REEYMILIDKIRAIIPNASISQDMIAGFPTETEEDHQDTISLMQYVKYNFGYMYSYSERP 376

Query: 372 GTPG-SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLV 429
           GT     M + V + +KA RL  +    ++     ++  +GQ +EVL+EK  K+   +  
Sbjct: 377 GTLAGRKMKDDVSDEIKARRLQEIVDLQQKHAWWRSEDFIGQTVEVLVEKVSKKSTEEFS 436

Query: 430 GRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           GR+    +VV   +++ IGD + V+I      TL GE V
Sbjct: 437 GRNSQSITVVFPKEHYKIGDFVNVKIKSCTSGTLKGEAV 475


>gi|158522366|ref|YP_001530236.1| RNA modification protein [Desulfococcus oleovorans Hxd3]
 gi|229890513|sp|A8ZVH2|MIAB_DESOH RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|158511192|gb|ABW68159.1| RNA modification enzyme, MiaB family [Desulfococcus oleovorans
           Hxd3]
          Length = 466

 Score =  419 bits (1077), Expect = e-115,   Method: Composition-based stats.
 Identities = 179/463 (38%), Positives = 261/463 (56%), Gaps = 31/463 (6%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +RF++ + GCQMNVYDS ++  +  + G+  VN+ + ADL+ +NTC IR KA +K  SF+
Sbjct: 2   KRFYIHTIGCQMNVYDSSQLSAILTAMGHRSVNAPEQADLVFVNTCTIRAKAKQKATSFV 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER-A 143
           GR+  +K +R     D++V V GC+AQ EG ++L   P V++V G     RLP  ++  A
Sbjct: 62  GRLAAMKRAR----PDMIVGVGGCLAQEEGRQLLDAFPCVDIVFGTHALGRLPGHIQAVA 117

Query: 144 RFGKRVVDTDY--SVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
             G R+VD +   ++++    L   D       GVT F+TI  GCD FCT+CVVPY RG 
Sbjct: 118 HQGDRIVDVEMTAAIDESVHALQGPDS-----SGVTGFITIMRGCDNFCTYCVVPYVRGR 172

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR+   ++DE R  +  G+ EITLLGQNVN++   G     C+F+DLL  ++EI GL 
Sbjct: 173 ETSRAPEHILDEIRARVAGGLREITLLGQNVNSY---GQKEGLCSFADLLARVNEIDGLH 229

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHP+D+S  L  A   LD L  ++HLP QSGSD +LK MNRR+T   Y + +  
Sbjct: 230 RIRFTTSHPKDLSPELAAAFTSLDKLCSHVHLPAQSGSDAVLKRMNRRYTRQAYLEKLHW 289

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R  +P +A+S+D IVGFPGET+ DF  T+DL++K+ Y   F+F YS R   P      +
Sbjct: 290 LREAQPGMALSTDIIVGFPGETEQDFLQTLDLIEKVRYDSIFAFMYSDRPLAPARAFDGK 349

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK---------LVGRS 432
           VDE  K +R+  L +         N A  G++ +VL+E   K  G+           GR+
Sbjct: 350 VDEAEKQQRIYALLELQNRITAEKNRALEGRVEQVLVEGKSKSSGRNDITADTVQWTGRT 409

Query: 433 PWLQSVVLNSKNHN-------IGDIIKVRITDVKISTLYGELV 468
              +                  G +++V I      +L G  V
Sbjct: 410 TCNRVANFTVPRELASGNAVGPGAMVRVEIMSGLAHSLSGIAV 452


>gi|72382710|ref|YP_292065.1| (dimethylallyl)adenosine tRNA methylthiotransferase
           [Prochlorococcus marinus str. NATL2A]
 gi|123732603|sp|Q46JG6|MIAB_PROMT RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|72002560|gb|AAZ58362.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Prochlorococcus marinus
           str. NATL2A]
          Length = 463

 Score =  419 bits (1077), Expect = e-115,   Method: Composition-based stats.
 Identities = 163/454 (35%), Positives = 252/454 (55%), Gaps = 23/454 (5%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           +++ ++GCQMN  DS RM  +    GY        ADL++ NTC IR+ A +KVYS+LGR
Sbjct: 21  YWITTFGCQMNKADSERMSGILEYMGYYPAEEELKADLVLYNTCTIRDSAEQKVYSYLGR 80

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
               K S      +L +VVAGC+AQ EGE +LRR P +++++GPQ   RL  LL +   G
Sbjct: 81  QAIRKRSL----PNLKIVVAGCLAQQEGESLLRRVPEIDLLMGPQHCNRLESLLNQVDSG 136

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           ++V+ T    E++F    I      R   +  ++ I  GC++ CT+CVVP  RG E SR+
Sbjct: 137 QQVLAT----EEQFILEDITTP--RRDSSICGWVNIIYGCNERCTYCVVPSVRGKEQSRT 190

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL------DGEKCTFSDLLYSLSEIKGL 260
              +  E   L  +G  EITLLGQN++A  G+        D  + T S LL  + +I+G+
Sbjct: 191 PEAIKSEVEDLAKSGYKEITLLGQNIDA-YGRDFQSQNKEDSAQVTLSYLLKYIHDIEGI 249

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+ TSHPR  +  LI    +L  +  + H+P QSGS++ILK+M R +T   Y+ II+
Sbjct: 250 ERIRFATSHPRYFTKELIDTCSELPKVCEHFHIPFQSGSNKILKNMGRGYTIESYKNIIN 309

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
            I++  P  AIS D IV FPGE++ D+  T+ L+D+I +    +  YSPR  TP +    
Sbjct: 310 YIKAKIPKAAISGDAIVAFPGESETDYEQTLSLIDEIKFDHVNTAAYSPRPNTPAATWPR 369

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLVGRSPWLQSVV 439
           Q++E++K +RL  +   +       N        E+LIE    +   +L+GR+   +   
Sbjct: 370 QLNEDIKVKRLREINSLVENIAKERNQRYKNTSQEILIENINPKDSFQLMGRTRTNRLTF 429

Query: 440 LN-----SKNHNIGDIIKVRITDVKISTLYGELV 468
                     + +G++IKV+ITDV+  +L  +L+
Sbjct: 430 FPRSLKNGVENKLGELIKVKITDVRPFSLTAKLL 463


>gi|227495825|ref|ZP_03926136.1| possible tRNA 2-methylthioadenine synthetase [Actinomyces
           urogenitalis DSM 15434]
 gi|226834647|gb|EEH67030.1| possible tRNA 2-methylthioadenine synthetase [Actinomyces
           urogenitalis DSM 15434]
          Length = 588

 Score =  419 bits (1077), Expect = e-115,   Method: Composition-based stats.
 Identities = 160/472 (33%), Positives = 263/472 (55%), Gaps = 40/472 (8%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNS------------MDDADLIVLNTC 70
           +P+ + V++ GCQMNV+DS  M  +  + GY RV                 AD++++NTC
Sbjct: 32  LPRTYHVRTLGCQMNVHDSEHMAGLLEAAGYRRVEEVPAAAARATEAGDGGADVVIINTC 91

Query: 71  HIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGP 130
            +RE AA +++  LG++  +K    +E   + + VAGC+AQ  GE I+ ++P V+VV G 
Sbjct: 92  SVRENAATRLFGNLGQLAAVK----RERPGMQIAVAGCLAQQMGEGIVEKAPWVDVVFGT 147

Query: 131 QTYYRLPELLERARFG-KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKF 189
                LP LLERAR   +  V+ + S++     L        R+    A+++I  GC+  
Sbjct: 148 HNLDVLPALLERARHNAEAAVELEESLKVFPSTLPT-----RRESAYAAWVSIAVGCNNT 202

Query: 190 CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSD 249
           CTFC+VP  RG +  R   +V+ E   +   GV E+TLLGQNVN+  G G  G++  F+ 
Sbjct: 203 CTFCIVPSLRGKQRDRRPGEVLAEIEAVAAQGVTEVTLLGQNVNS-YGVGF-GDRGAFAK 260

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
           LL +   ++G+ R+R+T+ HP   +  +I A  +   +MP LH+P+QSGSD++L++M R 
Sbjct: 261 LLRAAGGVEGIERVRFTSPHPAAFTSDVIDAMAETPQVMPSLHMPLQSGSDKVLRAMRRS 320

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369
           + +  + +I+D +R   P+ AI++D IVGFPGET++DF+AT+++V+K  +A AF+F+YSP
Sbjct: 321 YRSERFLRILDEVREKIPNAAITTDLIVGFPGETEEDFQATLEVVEKARFASAFTFEYSP 380

Query: 370 RLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEK--- 425
           R GTP +++  QV   V  +R   L + +R      N    G ++E+L+ E  G+     
Sbjct: 381 RPGTPAADLP-QVPVEVVKDRYKRLDELVRRITHEENVRQEGSVVELLVAEGEGRRDAVT 439

Query: 426 GKLVGRSPWLQSVV-----------LNSKNHNIGDIIKVRITDVKISTLYGE 466
            ++ GR+   + V                    GD+++VR+T      L  +
Sbjct: 440 ARISGRAADNRLVHAGLPAGLAADDYAGGAPRPGDMVRVRVTHGAPHNLIAD 491


>gi|300775426|ref|ZP_07085288.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Chryseobacterium gleum
           ATCC 35910]
 gi|300506166|gb|EFK37302.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Chryseobacterium gleum
           ATCC 35910]
          Length = 478

 Score =  419 bits (1077), Expect = e-115,   Method: Composition-based stats.
 Identities = 168/458 (36%), Positives = 255/458 (55%), Gaps = 23/458 (5%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F++SYGCQMN  DS  +  +   QGY     +++ADLI+LNTC IREKA + V   L
Sbjct: 25  KKLFLESYGCQMNFSDSEIVASILNEQGYNTTMKVEEADLILLNTCSIREKAEQTVRMRL 84

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            + +NLK    KE  ++ V V GC+A+    + L    +V++VVGP  Y  LP LL+   
Sbjct: 85  SQFKNLK----KERPNMTVGVLGCMAERLKTKFLEEEQLVDLVVGPDAYRDLPNLLKETD 140

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G+  ++   S E+ +  ++ V  G     GVTAF+TI  GCD  CTFCVVP+TRG E S
Sbjct: 141 DGRDAINVILSKEETYADINPVRLG---GNGVTAFVTITRGCDNMCTFCVVPFTRGRERS 197

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK-------------CTFSDLL 251
           R    +++E + L +NG  EITLLGQNV+++   G   +K               F+ LL
Sbjct: 198 RDPHSIIEECKDLANNGYKEITLLGQNVDSYLWYGGGPKKDFAKASEMQKATAVNFAQLL 257

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
             +++    +R+R++TS+P+DMS  + +     D +  Y+HLPVQSGS+ +L +MNR+HT
Sbjct: 258 DLVAKAVPELRIRFSTSNPQDMSLDVFRMMAKHDNICKYVHLPVQSGSNNMLAAMNRQHT 317

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
             EY  +I + + + P++A S D IVGF  ET++D + T+ L+ ++ Y   + F YS R 
Sbjct: 318 REEYLDLIRKAKEIVPEVAFSQDMIVGFCNETEEDHQDTLSLMREVEYDYGYMFAYSERP 377

Query: 372 GTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLV 429
           GTP    M + +  +VK  RL  +     E       + VG+  ++LIE   K+ K +  
Sbjct: 378 GTPAHKKMEDNIPADVKQRRLAEVIALQGELSKKRMKSYVGREHQILIEGISKKNKNQWK 437

Query: 430 GRSPWLQSVVLNS-KNHNIGDIIKVRITDVKISTLYGE 466
           GR+      V +  +   IGDI+ V + D    TL G 
Sbjct: 438 GRNSQNAVCVFDKLEGQKIGDIVNVFVYDNTQGTLLGR 475


>gi|115313109|gb|AAI24421.1| Zgc:162738 protein [Danio rerio]
          Length = 555

 Score =  419 bits (1077), Expect = e-115,   Method: Composition-based stats.
 Identities = 159/480 (33%), Positives = 245/480 (51%), Gaps = 39/480 (8%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ + ++YGCQMN  D+     +    GY R   +  AD+++L TC IREKA + +++ L
Sbjct: 68  RKVYFETYGCQMNTNDTEIAWSILQKAGYSRTLELQKADVVLLVTCSIREKAEQTIWNRL 127

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             +   K    K    L + V GC+A+    E+L +  +V+V+ GP  Y  LP LL  A 
Sbjct: 128 KHLTASKKRIQKHKRSLTIGVLGCMAERLKSELLDQEKLVDVLAGPDAYRDLPRLLSLAH 187

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G+R  +   S+E+ +  +  V   +    G +AF++I  GCD  C++C+VP+TRG E S
Sbjct: 188 GGQRASNVLLSLEETYADVIPV---HQTLEGHSAFVSIMRGCDNMCSYCIVPFTRGRERS 244

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG----------------------KGLDG 242
           R +S +V+E R L D GV EITLLGQNVN++R                            
Sbjct: 245 RPMSSIVEEVRMLSDQGVKEITLLGQNVNSYRDLSKLQFSCSERNTQLSRGFQSVYRTKQ 304

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
               F+DLL  +S I   +R+R+T+ HP+D  D +++   +   +  +LHLP QSGS RI
Sbjct: 305 GGLRFADLLDRVSLINPNMRIRFTSPHPKDFPDEVLQLIQERSNICKHLHLPAQSGSSRI 364

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           L +M R +T   Y ++++ IR + P +++SSDFI GF  ET++D + T+ L+ ++GY   
Sbjct: 365 LHAMRRGYTREAYLELVENIRKIIPGVSLSSDFIAGFCSETEEDHQQTISLLKEVGYNIG 424

Query: 363 FSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKH 421
           F F YS R  T     + + V   VK  RL  L    RE+    N   +G I  VL+E  
Sbjct: 425 FFFTYSMRKKTHAYHRLEDNVPAPVKKRRLEELISVFREKATKVNMTLIGNIQLVLVEGK 484

Query: 422 GKEKG-KLVGRSPWLQSVVLNSKNHNI------------GDIIKVRITDVKISTLYGELV 468
            K    +L GR+     V+    N  +            GD + V+IT     +L G  +
Sbjct: 485 SKRSSEELCGRNDGNVKVIFPKTNLPVQPEKTQMACITPGDYVLVKITSANSQSLRGHAL 544


>gi|325285677|ref|YP_004261467.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Cellulophaga lytica DSM 7489]
 gi|324321131|gb|ADY28596.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Cellulophaga lytica DSM 7489]
          Length = 480

 Score =  419 bits (1077), Expect = e-115,   Method: Composition-based stats.
 Identities = 159/461 (34%), Positives = 250/461 (54%), Gaps = 23/461 (4%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
            ++ +++SYGC MN  DS  +  +   +G+     ++DADL+++NTC IREKA   +   
Sbjct: 25  KRKLYIESYGCAMNFSDSEIVASILSEEGFNTTKVLEDADLVLVNTCSIREKAELTIRKR 84

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           L +   +K    +    L V V GC+A+    + L    IV++VVGP  Y  LP L++  
Sbjct: 85  LEKFNAVK----RTKPHLKVGVLGCMAERLKSQFLEEEKIVDMVVGPDAYKDLPNLIKEV 140

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             G+  ++   S E+ +  ++ V        G++A+++I  GCD  CTFCVVP+TRG E 
Sbjct: 141 DEGRNAINVILSKEETYGDVAPVRLN---TNGISAYVSITRGCDNMCTFCVVPFTRGRER 197

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK-------------CTFSDL 250
           SR    +++E   L + G  EITLLGQNV+++   G   +K               F++L
Sbjct: 198 SREPQSILEEVNDLWNRGYKEITLLGQNVDSYLWYGGGLKKDFNQATEMQKATAVNFANL 257

Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
           L   +  +  +R+R++TS+P+D++  ++K     D +  ++HLPVQSGSDRILK+MNR H
Sbjct: 258 LEMTAIAQPKMRIRFSTSNPQDLTLDVVKTMAKYDNICKHIHLPVQSGSDRILKAMNRLH 317

Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370
           T  EY  +ID IR + PD AIS D I GFP ET++D + T+ L++ + Y   + + YS R
Sbjct: 318 TREEYFTLIDNIRQIIPDCAISQDMIAGFPTETEEDHKDTLSLLEYVKYDFGYMYSYSER 377

Query: 371 LGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKL 428
            GT  +  + + V E  K  RL  +    R+         +G+I EVLIE   K      
Sbjct: 378 PGTMAARKLEDDVPEADKKRRLAEIIALQRQHSGYRLQQRLGKIDEVLIEGESKRSTEHW 437

Query: 429 VGRSPWLQSVVLNSKN-HNIGDIIKVRITDVKISTLYGELV 468
           +GR+     VV   +    +G+ ++V+I D    TL G +V
Sbjct: 438 MGRNSQNAVVVFPKEEGSQVGEFVQVKIEDCTTGTLLGSIV 478


>gi|295399226|ref|ZP_06809208.1| RNA modification enzyme, MiaB family [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|294978692|gb|EFG54288.1| RNA modification enzyme, MiaB family [Geobacillus
           thermoglucosidasius C56-YS93]
          Length = 451

 Score =  419 bits (1077), Expect = e-115,   Method: Composition-based stats.
 Identities = 143/452 (31%), Positives = 240/452 (53%), Gaps = 22/452 (4%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           +P      + GC++N Y++  +  +F   GYER +    AD+ V+NTC +     +K   
Sbjct: 1   MP-TVAFHTLGCKVNHYETEAIWQLFKKAGYERKDFDSMADVYVINTCTVTNTGDKKSRQ 59

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            + R        I+   D +V V GC AQ    E++   P V++V+G Q   ++ E +E+
Sbjct: 60  VIRRA-------IRRNPDAVVCVTGCYAQTSPAEVMA-IPGVDIVIGTQDRGKILEYVEQ 111

Query: 143 ARFGKRVVDTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
            +  +R ++  +++     FE + + +          A L IQEGC+ FCTFC++P+ RG
Sbjct: 112 FQRERRPINAVHNIMKTRVFEEMDVPE----FSDRTRASLKIQEGCNNFCTFCIIPWARG 167

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE-IKG 259
           +  SR   +++ +A++L++ G  EI L G +     G G D +   F+ LL  L E + G
Sbjct: 168 LMRSRDPQEIIRQAQQLVNAGYKEIVLTGIHTG---GYGTDMKDYNFAALLRDLDEQVVG 224

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           L RLR ++     ++D +I      D ++ +LH+P+QSGS+ +LK M R++T   + + +
Sbjct: 225 LKRLRISSIEASQITDEVIDVLRRSDKIVRHLHIPLQSGSNTVLKRMRRKYTTEFFAERL 284

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            R+R V P++AI+SD IVGFPGET+++F  T + V +  +++   F YS R GTP + M 
Sbjct: 285 ARLREVFPELAITSDVIVGFPGETEEEFMETYNFVREQRFSELHVFPYSKRTGTPAARMP 344

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK---GKLVGRSPWLQ 436
            QVDE VK +R+  L     +    +     GQ++EV+ E+  KE    G  +G +    
Sbjct: 345 NQVDEEVKHDRVRRLIALSDQLAKEYASQFEGQVLEVIPEERDKENLESGLYIGYTDNYL 404

Query: 437 SVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            V   +    +G+I+KV+IT        GE V
Sbjct: 405 KVRFPATEEMVGEIVKVKITKAGYPYNEGEFV 436


>gi|62857473|ref|NP_001017192.1| CDK5 regulatory subunit associated protein 1 [Xenopus (Silurana)
           tropicalis]
          Length = 569

 Score =  419 bits (1077), Expect = e-115,   Method: Composition-based stats.
 Identities = 155/480 (32%), Positives = 248/480 (51%), Gaps = 41/480 (8%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + ++++YGCQMNV D+     +    GY R  +  +AD+I+L TC +REKA + +++ L 
Sbjct: 82  KIYLETYGCQMNVNDTEIAWSILQQNGYVRTYTEAEADVILLVTCSVREKAEQTIWNRLQ 141

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           ++  LK  R K    + + + GC+A+   +EIL +  +V++V GP  Y  LP LL  A  
Sbjct: 142 QLAALKRKRSKTSR-MRIGLLGCMAERLKQEILDKENLVDLVAGPDAYRDLPRLLSVAET 200

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G++V +   SV++ +  +  V    + K   +AF++I  GCD  CT+C+VP+TRG E SR
Sbjct: 201 GQQVANVLLSVDETYADIMPVHTSASSK---SAFVSIMRGCDNMCTYCIVPFTRGRERSR 257

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG---------------------LDGEK 244
            L  +++E R L   GV E+TLLGQNVN++R                             
Sbjct: 258 PLQSILEEVRMLSSQGVKEVTLLGQNVNSYRDTSSAQFPNAESPPLSRGFSTIYKHKKGG 317

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304
             F DLL  +S+I   +R+R+T+ HP+D  D +++   +   +   +H+P QSGS+++L+
Sbjct: 318 LRFVDLLDKVSQIDPEMRIRFTSPHPKDFPDEVLQLIAERHNICKQIHIPAQSGSNKVLE 377

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
           +M R ++   Y  +I  I+   P +++SSDFI GF  ET++D   T+ L+  + Y  AF 
Sbjct: 378 TMRRGYSREVYLDLIQNIQESIPGVSLSSDFITGFCEETEEDHLQTLSLLRTVSYNAAFL 437

Query: 365 FKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK 423
           F YS R  T     + + V + VK  RL  L    RE+    N   VG    VL+E   K
Sbjct: 438 FAYSMRKKTRAYHRLQDDVPQEVKQRRLAELIAVFREEAGRVNQRAVGSTQLVLVEGPSK 497

Query: 424 E-KGKLVGRSPWLQSVVLNSKN------------HNI--GDIIKVRITDVKISTLYGELV 468
               +L GR+     V+ +               + I  GD + V+IT     +L G L+
Sbjct: 498 RSPEELCGRNDGNTKVIFSEAPIVGGLAQENSLQNRIQSGDYVLVKITSSSSQSLKGTLL 557


>gi|89272073|emb|CAJ81315.1| CDK5 regulatory subunit associated protein 1 [Xenopus (Silurana)
           tropicalis]
          Length = 625

 Score =  419 bits (1077), Expect = e-115,   Method: Composition-based stats.
 Identities = 155/480 (32%), Positives = 248/480 (51%), Gaps = 41/480 (8%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + ++++YGCQMNV D+     +    GY R  +  +AD+I+L TC +REKA + +++ L 
Sbjct: 138 KIYLETYGCQMNVNDTEIAWSILQQNGYVRTYTEAEADVILLVTCSVREKAEQTIWNRLQ 197

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           ++  LK  R K    + + + GC+A+   +EIL +  +V++V GP  Y  LP LL  A  
Sbjct: 198 QLAALKRKRSKTSR-MRIGLLGCMAERLKQEILDKENLVDLVAGPDAYRDLPRLLSVAET 256

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G++V +   SV++ +  +  V    + K   +AF++I  GCD  CT+C+VP+TRG E SR
Sbjct: 257 GQQVANVLLSVDETYADIMPVHTSASSK---SAFVSIMRGCDNMCTYCIVPFTRGRERSR 313

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG---------------------LDGEK 244
            L  +++E R L   GV E+TLLGQNVN++R                             
Sbjct: 314 PLQSILEEVRMLSSQGVKEVTLLGQNVNSYRDTSSAQFPNAESPPLSRGFSTIYKHKKGG 373

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304
             F DLL  +S+I   +R+R+T+ HP+D  D +++   +   +   +H+P QSGS+++L+
Sbjct: 374 LRFVDLLDKVSQIDPEMRIRFTSPHPKDFPDEVLQLIAERHNICKQIHIPAQSGSNKVLE 433

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
           +M R ++   Y  +I  I+   P +++SSDFI GF  ET++D   T+ L+  + Y  AF 
Sbjct: 434 TMRRGYSREVYLDLIQNIQESIPGVSLSSDFITGFCEETEEDHLQTLSLLRTVSYNAAFL 493

Query: 365 FKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK 423
           F YS R  T     + + V + VK  RL  L    RE+    N   VG    VL+E   K
Sbjct: 494 FAYSMRKKTRAYHRLQDDVPQEVKQRRLAELIAVFREEAGRVNQRAVGSTQLVLVEGPSK 553

Query: 424 E-KGKLVGRSPWLQSVVLNSKN------------HNI--GDIIKVRITDVKISTLYGELV 468
               +L GR+     V+ +               + I  GD + V+IT     +L G L+
Sbjct: 554 RSPEELCGRNDGNTKVIFSEAPIVGGLAQENSLQNRIQSGDYVLVKITSSSSQSLKGTLL 613


>gi|239617912|ref|YP_002941234.1| RNA modification enzyme, MiaB family [Kosmotoga olearia TBF 19.5.1]
 gi|239506743|gb|ACR80230.1| RNA modification enzyme, MiaB family [Kosmotoga olearia TBF 19.5.1]
          Length = 440

 Score =  419 bits (1077), Expect = e-115,   Method: Composition-based stats.
 Identities = 166/444 (37%), Positives = 261/444 (58%), Gaps = 14/444 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +   +++GCQMNV D+  M  +  S GY  V++ ++AD++++NTC +REKA +K+Y  LG
Sbjct: 2   KIAFRTFGCQMNVNDTETMAGILKSNGYVIVDNEEEADVVIVNTCAVREKAEKKLYGKLG 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R+R+LK    K+  +L++ V+GCVA+ E E +L+R   VN V G ++  R+ E LERA  
Sbjct: 62  RLRSLK----KKNRNLIIGVSGCVAEKEKEALLKR-EEVNFVFGTRSISRVNEFLERAIK 116

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G+R V+    +++             R     A++TI  GC+KFC++C+VPYTRG E SR
Sbjct: 117 GERFVELSDFIDEINSSTP-----RLRTSRHHAWVTIIYGCNKFCSYCIVPYTRGREKSR 171

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           S+  +++E ++L   G  E+T LGQNV+++     DG   T + L+    +I+ + R+ Y
Sbjct: 172 SMEDILNEVKRLASKGYREVTYLGQNVDSYGKDLADG--STLAKLIRETLKIEQIERIWY 229

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
            TS+P+D SD LI        +   +HLP+QSGS+RILK+MNR +T  EY  +I RIR+ 
Sbjct: 230 LTSYPKDFSDELIDVIATSKRVSRSIHLPIQSGSNRILKAMNRGYTREEYLDLIRRIRTK 289

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN-MLEQVDE 384
            PD +IS+D IVGFPGE++DD+  T  L++++ + +     YSPR GT  +  M + V  
Sbjct: 290 VPDASISTDIIVGFPGESEDDYLQTKSLLEEVIFERVNLAIYSPREGTISAKYMKDDVPH 349

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
            +K  RL  L +  +      N   +G+ +E+++E   K+ G L GR+   + V  +   
Sbjct: 350 EIKVRRLQELLELQKCLNRKINSEYIGKTVEIIVEAKHKD-GMLYGRTINNKIVFFHGSE 408

Query: 445 HNIGDIIKVRITDVKISTLYGELV 468
             IG   K+ I       LYG+LV
Sbjct: 409 ELIGSKAKITIEKTTAGPLYGQLV 432


>gi|326798175|ref|YP_004315994.1| (dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Sphingobacterium sp. 21]
 gi|326548939|gb|ADZ77324.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Sphingobacterium sp. 21]
          Length = 477

 Score =  419 bits (1077), Expect = e-115,   Method: Composition-based stats.
 Identities = 163/469 (34%), Positives = 257/469 (54%), Gaps = 18/469 (3%)

Query: 9   GVAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLN 68
           G A M+S   +Q    ++ +++SYGCQMN  DS  +  +   +G+       +AD++ +N
Sbjct: 17  GEAVMLSDNKEQN--GRKLYIESYGCQMNFADSEIVASILLDKGFSTTPDYKEADVVFIN 74

Query: 69  TCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVV 128
           TC IRE A ++V + L    + K         ++V V GC+A+    + L    +V+VVV
Sbjct: 75  TCSIRENAEQRVRNRLKEFESAKLK----KPGMIVGVLGCMAERLKSKFLEEEKLVDVVV 130

Query: 129 GPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
           GP  Y  LP L+E+   G R V+   S E+ +  ++ V        GVTAF++I  GCD 
Sbjct: 131 GPDAYRDLPNLIEKVDDGSRAVNVLLSREETYADINPVRLN---TNGVTAFISIMRGCDN 187

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE----- 243
            C+FCVVP+TRG E SR    +V EAR L   G  E+TLLGQNV++++    + +     
Sbjct: 188 MCSFCVVPFTRGRERSRDPYSIVKEARDLFKAGYREVTLLGQNVDSYKWSPQEDDAAANH 247

Query: 244 -KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
              TF+ LL  ++ +  L+R+R++TSHP+D++D ++ +    + +  Y+HLPVQSG+ RI
Sbjct: 248 TTITFAKLLEMVAAVDPLLRVRFSTSHPKDITDEVLYSIARHENICNYIHLPVQSGNSRI 307

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           L+ MNR +    Y + ID I+ + PD AIS+D I GF  ET+++ + T+ ++D + Y  A
Sbjct: 308 LELMNRTYDRAWYMERIDTIKRIIPDCAISTDVITGFCSETEEEHQDTLSMMDYVQYDYA 367

Query: 363 FSFKYSPRLGTPGSNML-EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKH 421
           + F YS R GT  +    + + E +K  RL  + +K R   +      VG+I +VLIE  
Sbjct: 368 YMFAYSERPGTLAAKRYADDIPEEIKKRRLTEVVEKQRAHSLFRLQQQVGKIHKVLIEGF 427

Query: 422 GKEKGK-LVGRSPWLQSVVLN-SKNHNIGDIIKVRITDVKISTLYGELV 468
            K   K   GR+     VV      + +GD + V       +TL G++V
Sbjct: 428 SKRSDKDYCGRNDQNAMVVFPVDARYKVGDYVNVMAETCTSATLIGKIV 476


>gi|229890680|sp|B1ZVI7|MIAB_OPITP RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
          Length = 480

 Score =  419 bits (1077), Expect = e-115,   Method: Composition-based stats.
 Identities = 169/472 (35%), Positives = 260/472 (55%), Gaps = 32/472 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R  +K+YGCQMN  DS  +  M  ++GY  V   +D D+++LNTC +R+ A +K     G
Sbjct: 3   RVHIKTYGCQMNERDSEAVAAMLRARGYRIVADENDCDILLLNTCSVRDAAEQKAIGKAG 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            ++  K  +     D ++ + GC+AQ  G  +L + P V+++VG Q ++++P  L+  R 
Sbjct: 63  YLQQRKKKQ----PDFVLGILGCMAQNRGASLLDQLPDVDLIVGTQKFHQVPGYLDNLRA 118

Query: 146 --------GKRVVDTDY---SVEDKFERLSIVDGGYNRKRG---------------VTAF 179
                   G+ +VD      S     + L   D   + +                 +TAF
Sbjct: 119 ARDAGVPIGETIVDIGEEAGSQNTIKDHLLPQDSDSDSQPSTLNSQLRGAAAPPPQITAF 178

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW--RG 237
           ++IQ+GC+  C FC+VP TRG E SR +  +V E  +L   GV E+TLLGQ V ++  R 
Sbjct: 179 VSIQQGCNMDCAFCIVPKTRGDERSRPMDDIVRECEQLAARGVREVTLLGQIVTSYGRRD 238

Query: 238 KGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQS 297
                    F  LL  +  + G+ R+R+T+ HPR   D L+ A+G L  L  Y+HLP+QS
Sbjct: 239 YTHTNGISPFVQLLERVHALDGIERIRFTSPHPRGFKDDLVAAYGRLPKLCGYVHLPLQS 298

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
           GS+RIL++MNR +T   YR+I+D +R+VR D+  S+D IVGFPGETD+DF  T +L +  
Sbjct: 299 GSNRILRAMNRPYTRERYREIVDALRAVRSDMYFSTDVIVGFPGETDEDFEQTRELFEAC 358

Query: 358 GYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVL 417
            Y  A+ FKYS R GTP +   +QV E+VK +R   L + LR+     N   +  + EVL
Sbjct: 359 NYDMAYVFKYSVRTGTPAAERGDQVPEDVKEQRNQLLLELLRQNSERRNALLLDTVEEVL 418

Query: 418 IEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
           +E   K   +  GR+   +  +  +    +G ++ +RIT   +STLYGEL++
Sbjct: 419 VEGPDKTGQRFTGRTRGNRVCIFEATPDLVGRLVSLRITRASVSTLYGELML 470


>gi|227503441|ref|ZP_03933490.1| tRNA 2-methylthioadenosine synthase [Corynebacterium accolens ATCC
           49725]
 gi|227075944|gb|EEI13907.1| tRNA 2-methylthioadenosine synthase [Corynebacterium accolens ATCC
           49725]
          Length = 489

 Score =  419 bits (1077), Expect = e-115,   Method: Composition-based stats.
 Identities = 156/451 (34%), Positives = 239/451 (52%), Gaps = 25/451 (5%)

Query: 36  MNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRI 95
           MNV+DS R+  +    GY   +   + DLIV NTC +RE A +++Y  LG ++  K +  
Sbjct: 1   MNVHDSERISGLLEEAGYAAADEATEPDLIVFNTCAVRENADKRLYGTLGALKKTKENH- 59

Query: 96  KEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYS 155
                + + V GC+AQ + + +L  +P V+ V G      LP LLERAR  +        
Sbjct: 60  ---PGMQIAVGGCLAQKDKDTVLDNAPWVDAVFGTHNMAALPTLLERARHNEEAQVEIVD 116

Query: 156 VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEAR 215
             + F  +        R+     ++++  GC+  CTFC+VP  RG E  R    ++ E +
Sbjct: 117 SLEAFPSVLPA----KRESAYAGWVSVSVGCNNTCTFCIVPSLRGKEEDRRPGDILAEVQ 172

Query: 216 KLIDNGVCEITLLGQNVNAWRGKGLDGEKCT----FSDLLYSLSEIKGLVRLRYTTSHPR 271
            L+D GV E+TLLGQNVNA+     D E       FS LL  + +I GL RLR+T+ HP 
Sbjct: 173 ALVDQGVSEVTLLGQNVNAYGVNFADPEMPRDRFAFSKLLREVGKIDGLERLRFTSPHPA 232

Query: 272 DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAI 331
           + +  +I A  +   + P LH+P+QSGSD++LK M R +   ++ +I+D +R   P+ AI
Sbjct: 233 EFTSDVIDAMAETPAVCPQLHMPLQSGSDKVLKDMRRSYRTKKFLRILDEVREKIPNAAI 292

Query: 332 SSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERL 391
           ++D IVGFPGET++DF+ATMDLV +  +A AF+F+YSPR GTP + M  QV + V  +R 
Sbjct: 293 TTDIIVGFPGETEEDFQATMDLVRRARFASAFTFQYSPRPGTPAAEMENQVPKEVVQDRF 352

Query: 392 LCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG----KLVGRSPWLQSVVLN------ 441
             L       Q   N   VG  +E+L++  G  K     ++ GR+   + V  +      
Sbjct: 353 ERLVALQDSIQAEENQKLVGTEVELLVQAEGGRKNDETHRMSGRARDGRLVHFSPIDANG 412

Query: 442 ---SKNHNIGDIIKVRITDVKISTLYGELVV 469
              S     GD+++ ++T      L  +  V
Sbjct: 413 ADISAEIRPGDVVRTKVTGAGSFFLLADAAV 443


>gi|260435870|ref|ZP_05789840.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Synechococcus sp. WH
           8109]
 gi|260413744|gb|EEX07040.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Synechococcus sp. WH
           8109]
          Length = 464

 Score =  418 bits (1076), Expect = e-115,   Method: Composition-based stats.
 Identities = 176/466 (37%), Positives = 264/466 (56%), Gaps = 25/466 (5%)

Query: 17  IVDQCIVPQR--FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIRE 74
             D    PQR  +++ ++GCQMN  DS RM  +  + GY   ++  DADL++ NTC IR+
Sbjct: 8   ATDATANPQRGSYWITTFGCQMNKADSERMAGILEAMGYREASAELDADLVLYNTCTIRD 67

Query: 75  KAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYY 134
            A +KVYS+LGR    K    +   +L +VVAGCVAQ EGE +LRR P +++V+GPQ   
Sbjct: 68  NAEQKVYSYLGRQAQRK----RSNPNLTLVVAGCVAQQEGESLLRRVPELDLVMGPQHAN 123

Query: 135 RLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCV 194
           RL  LL +   G++VV T+       E ++       R   +  ++ +  GC++ CT+CV
Sbjct: 124 RLETLLLQVDSGQQVVATE--DHHILEDITTAR----RDSSICGWVNVIYGCNERCTYCV 177

Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG------EKCTFS 248
           VP  RG E SR    +  E   L   G  EITLLGQN++A  G+ L G       + T +
Sbjct: 178 VPSVRGKEQSRLPEAIKLEMEGLAAQGYKEITLLGQNIDA-YGRDLPGITPEGRRQHTLT 236

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
           DLL+ + +++G+ R+R+ TSHPR  ++ LI A  DL  L  + H+P QSG + +L++M R
Sbjct: 237 DLLHHVHDVEGIERIRFATSHPRYFTERLIDACADLPKLCEHFHIPFQSGDNDVLQAMAR 296

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
            +T   YR+IIDRIR   PD ++S+D IV FPGETD  +R T+ L+++IG+ Q  +  YS
Sbjct: 297 GYTVERYRRIIDRIRERMPDASLSADVIVAFPGETDAQYRRTLHLIEEIGFDQVNTAAYS 356

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGK 427
           PR  TP +N   Q+ E VK ERL  +   +       N    G+  EVL E    K   +
Sbjct: 357 PRPNTPAANWENQLPEEVKVERLREINALVERCARKANTRYEGRTEEVLAEGINPKAPSQ 416

Query: 428 LVGRSPWLQSVVL-----NSKNHNIGDIIKVRITDVKISTLYGELV 468
           L+GR+   +         + + +  GD+++VRI +V+  +L G  +
Sbjct: 417 LMGRTRTNRLTFFSSTGADGRAYKAGDLVEVRIDEVRSFSLSGSPL 462


>gi|312110172|ref|YP_003988488.1| RNA modification enzyme, MiaB family [Geobacillus sp. Y4.1MC1]
 gi|311215273|gb|ADP73877.1| RNA modification enzyme, MiaB family [Geobacillus sp. Y4.1MC1]
          Length = 451

 Score =  418 bits (1076), Expect = e-115,   Method: Composition-based stats.
 Identities = 143/452 (31%), Positives = 241/452 (53%), Gaps = 22/452 (4%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           +P      + GC++N Y++  +  +F   GYER +    AD+ V+NTC +     +K   
Sbjct: 1   MP-TVAFHTLGCKVNHYETEAIWQLFKKAGYERKDFDSMADVYVINTCTVTNTGDKKSRQ 59

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            + R        I+   D +V V GC AQ    E++   P V++V+G Q   ++ E +E+
Sbjct: 60  VIRRA-------IRRNPDAVVCVTGCYAQTSPAEVMA-IPGVDIVIGTQDRGKILEYVEQ 111

Query: 143 ARFGKRVVDTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
            +  +R ++  +++     FE + + +          A L IQEGC+ FCTFC++P+ RG
Sbjct: 112 FQRERRPINAVHNIMKTRVFEEMDVPE----FSDRTRASLKIQEGCNNFCTFCIIPWARG 167

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE-IKG 259
           +  SR   +++ +A++L++ G  EI L G +     G G D +   F+ LL  L E + G
Sbjct: 168 LMRSRDPQEIIRQAQQLVNAGYKEIVLTGIHTG---GYGTDMKDYNFAALLRDLDEQVVG 224

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           L RLR ++     ++D +I      D ++ +LH+P+QSGS+ +LK M R++T   + + +
Sbjct: 225 LKRLRISSIEASQITDEVIDVLRRSDKIVRHLHIPLQSGSNTVLKRMRRKYTTEFFAERL 284

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            R+R V P++AI+SD IVGFPGET+++F  T + V +  +++   F YS R GTP + M 
Sbjct: 285 ARLREVFPELAITSDVIVGFPGETEEEFMETYNFVREQRFSELHVFPYSKRTGTPAARMP 344

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK---GKLVGRSPWLQ 436
            QVDE+VK +R+  L     +    +     GQ++EV+ E+  KE    G  +G +    
Sbjct: 345 NQVDEDVKHDRVRRLIALSDQLAKEYASQFEGQVLEVIPEERDKENLESGLYIGYTDNYL 404

Query: 437 SVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            V   +    +G+I+KV+IT        GE V
Sbjct: 405 KVRFPATEEMVGEIVKVKITKAGYPYNEGEFV 436


>gi|42523558|ref|NP_968938.1| hypothetical protein Bd2086 [Bdellovibrio bacteriovorus HD100]
 gi|81617194|sp|Q6MLC6|MIAB_BDEBA RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|39575764|emb|CAE79931.1| conserved hypothetical protein [Bdellovibrio bacteriovorus HD100]
          Length = 453

 Score =  418 bits (1076), Expect = e-115,   Method: Composition-based stats.
 Identities = 162/448 (36%), Positives = 253/448 (56%), Gaps = 15/448 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + +  ++ +YGCQMNV D+ RM  +   Q +  V     A LI++N+C +REK   KVYS
Sbjct: 19  MGRGVYISTYGCQMNVNDTERMYALLEMQNFVPVTDPKKASLIIINSCSVREKPVHKVYS 78

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +G  + +K        +L + V GCV Q E E +++  P+++ V G      LP+L+ +
Sbjct: 79  EVGTYKYMKRK----NPELKIGVGGCVGQQEKENLMKTQPMIDFVFGTDQIDSLPQLVAK 134

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVD-GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           +  G+R +     V  +FE  S        R  GV  ++ I +GCD FCTFCVVPYTRG 
Sbjct: 135 SFAGERRL-----VNSRFEHRSPYHIETLVRNPGVATYVNITKGCDNFCTFCVVPYTRGR 189

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR +  ++ + R L+  GV E+TLLGQNVN+++G     E   F+DLL  +++   + 
Sbjct: 190 EKSRPVQHILTDIRHLVKRGVKEVTLLGQNVNSYQGD----EGIDFADLLAKVAKETDVE 245

Query: 262 RLRYTTSHPRDMSDCLIKAHGDL-DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
           R+RYTTSHP+D +  L+    +  + +M Y+HLP Q+GS ++L+ MNR +T  EY + I 
Sbjct: 246 RIRYTTSHPKDFNQKLVDVMAEHSNKIMEYIHLPFQAGSTKVLERMNRNYTREEYLERIA 305

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
            I+   P++  S+D IVGFPGET++DF+ T+++V ++G+   F+F YSPR  T  +   +
Sbjct: 306 MIQKGLPNVCFSTDIIVGFPGETEEDFQDTLNMVTEVGFETIFAFSYSPRPFTKAAKFED 365

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440
           Q+ E+VK ERL  L                G  ++VL+E   ++ GK+ GRS   + V  
Sbjct: 366 QLPEDVKNERLNRLFDVHEAMAFERVKRYEGTTMKVLVENVDRDHGKMQGRSTGNKLVHF 425

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 IG  + V+IT    +   GE++
Sbjct: 426 LGTADLIGKTVDVKITKAFPAVFRGEMI 453


>gi|239827771|ref|YP_002950395.1| RNA modification enzyme, MiaB family [Geobacillus sp. WCH70]
 gi|239808064|gb|ACS25129.1| RNA modification enzyme, MiaB family [Geobacillus sp. WCH70]
          Length = 451

 Score =  418 bits (1076), Expect = e-115,   Method: Composition-based stats.
 Identities = 145/452 (32%), Positives = 240/452 (53%), Gaps = 22/452 (4%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           +P      + GC++N Y++  +  +F   GYER +    AD+ V+NTC +     +K   
Sbjct: 1   MP-TVAFHTLGCKVNHYETEAIWQLFKKAGYERKDFDSRADVYVINTCTVTNTGDKKSRQ 59

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            + R        I+   D +V V GC AQ    E++   P V++V+G Q   ++ E +ER
Sbjct: 60  VIRRA-------IRRNPDAVVCVTGCYAQTSPAEVMA-IPGVDIVIGTQDRGKILEYIER 111

Query: 143 ARFGKRVVDTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
            +  ++ ++   ++     FE + + +          A L IQEGC+ FCTFC++P+ RG
Sbjct: 112 FQRERQPINGVSNIMKTRVFEEMDVPE----FTDRTRASLKIQEGCNNFCTFCIIPWARG 167

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE-IKG 259
           +  SR   +V+ +A++L+D G  EI L G +     G G D +  +F+ LL  L E + G
Sbjct: 168 LMRSRDPKEVIRQAQQLVDAGYKEIVLTGIHTG---GYGTDLKDYSFAALLRDLDEQVVG 224

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           L RLR ++     ++D +I+     D ++ +LH+P+QSGS+ +LK M R++T   + + +
Sbjct: 225 LKRLRISSIEASQITDEIIEVLQRSDKIVRHLHIPLQSGSNTVLKRMRRKYTVEFFAERL 284

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            R+R V P++AI+SD IVGFPGET+++F  T   + +  +++   F YS R GTP + M 
Sbjct: 285 QRLREVFPELAITSDVIVGFPGETEEEFMETYHFIREQRFSELHVFPYSKRTGTPAARMP 344

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK---GKLVGRSPWLQ 436
            QVDE VK ER+  L     +    +     GQ++EV+ E+  KE    G  +G +    
Sbjct: 345 NQVDEEVKNERVHRLIALSDQLAKEYASQFEGQVLEVIPEERDKENPESGLYIGYTDNYL 404

Query: 437 SVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            V   +    +G+I+KV+IT        GE V
Sbjct: 405 KVKFPATEEMVGEIVKVKITKAGYPYNEGEFV 436


>gi|323486989|ref|ZP_08092303.1| hypothetical protein HMPREF9474_04054 [Clostridium symbiosum
           WAL-14163]
 gi|323692033|ref|ZP_08106281.1| MiaB family RNA modification enzyme [Clostridium symbiosum
           WAL-14673]
 gi|323399701|gb|EGA92085.1| hypothetical protein HMPREF9474_04054 [Clostridium symbiosum
           WAL-14163]
 gi|323503956|gb|EGB19770.1| MiaB family RNA modification enzyme [Clostridium symbiosum
           WAL-14673]
          Length = 445

 Score =  418 bits (1076), Expect = e-115,   Method: Composition-based stats.
 Identities = 137/449 (30%), Positives = 231/449 (51%), Gaps = 16/449 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC  N+ D+  M  +    G+   +  ++AD+I++NTC     A E+  + + 
Sbjct: 2   KILCISLGCDKNLVDTEMMLGLLNKDGHTFTDDENEADIILINTCCFINDAKEESVNTIL 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +   K    K G    ++V GC+AQ   EEI++  P V+ ++G  TY  +  +L +A  
Sbjct: 62  EMAEYK----KSGKCRALIVTGCMAQRYKEEIIKEIPEVDGILGTSTYDEISNVLNKALS 117

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G++ V       D      + +       G  AFL I EGC+K CT+C++P  RG   S 
Sbjct: 118 GEQAVC----FHDLSALPEVSEKRIVTTGGHYAFLKISEGCNKRCTYCIIPSLRGPYRSV 173

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            + +++ EA +L   GV E+ L+ Q      G  L G+K    +LL  L+EI G+  LR 
Sbjct: 174 PMERLLTEAGQLAGQGVKELILVAQETT-LYGTDLYGKKM-LPELLRRLAEIPGIEWLRV 231

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
              +P ++++ L++   + + +  YL +P+Q  SDRILKSM R+ +  E ++ I R+R  
Sbjct: 232 QYCYPEEITEELVQVIKEEEKVCHYLDIPIQHASDRILKSMGRKTSREELKERIARLREE 291

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            PDI + +  I GFPGET  D    M+ VD++ + +   F YS    TP ++  +QV E 
Sbjct: 292 IPDIVLRTTLISGFPGETPQDHEELMEFVDEMEFDRLGVFAYSAEEDTPAASFPDQVPEE 351

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVLN 441
           V+AER   L +  ++      ++ VG+I+EV+IE    ++   VGR+    P +  ++  
Sbjct: 352 VRAERRDELMELQQDIAFEKAESMVGRILEVMIEGKVADENAFVGRTYMDAPGVDGLIFV 411

Query: 442 SKNHNI--GDIIKVRITDVKISTLYGELV 468
           + +  +  GD  +VR+T      L GE++
Sbjct: 412 NADVPLMSGDFCRVRVTGAADYDLIGEMI 440


>gi|257439844|ref|ZP_05615599.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Faecalibacterium
           prausnitzii A2-165]
 gi|257197753|gb|EEU96037.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Faecalibacterium
           prausnitzii A2-165]
          Length = 460

 Score =  418 bits (1076), Expect = e-115,   Method: Composition-based stats.
 Identities = 172/448 (38%), Positives = 249/448 (55%), Gaps = 14/448 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
            P   FV SYGCQ NV D  R++ +    GY   +  +DADLI+ NTC +RE A ++V+ 
Sbjct: 22  TPPLAFVHSYGCQQNVNDGERIKGVLVDIGYGLCDKPEDADLILFNTCAVREHAEQRVFG 81

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELL 140
            +G ++ LK         L++ + GC+A  +   E++ +  P V++V G      LP+L+
Sbjct: 82  NVGALKGLKEK----KRGLMIGLCGCMANQKHVVEKLRKSYPYVDLVFGVDGIDTLPQLI 137

Query: 141 -ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
            ++ +  KRV+          E + I      R+    A+L I  GCD FCT+C+VPY R
Sbjct: 138 AQKLQKHKRVLMEPAQRPVIVENIPI-----RRESEFRAWLPIMYGCDNFCTYCIVPYVR 192

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G E SR    ++ E R L++ G  EITLLGQNVN+  GKGL+ E+  F+DLL  L  + G
Sbjct: 193 GREKSRKPGDILAEFRGLVEAGYKEITLLGQNVNS-YGKGLE-EQVDFADLLNLLCAVPG 250

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
             ++R+ TSHP+D S  LI        L  +LHLPVQ GSD +LK MNR +T  +Y ++I
Sbjct: 251 DYQIRFMTSHPKDASHKLIDTIAAQPHLCKHLHLPVQCGSDELLKKMNRHYTIGQYMELI 310

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
           +  R   P I  SSD IVGFPGET++DF+ T++LV K+GY Q F+F YS R GT  + M 
Sbjct: 311 EYARKKVPGITFSSDIIVGFPGETEEDFQDTLELVKKVGYMQLFTFIYSKRTGTKAAEMP 370

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV 439
           +      K +R+  L K   E  +      VGQ + VL+E +G+  G L GR     +V 
Sbjct: 371 DPTPRAEKTDRMTRLLKVQDEIAMDLVRQQVGQTVRVLVEGYGRSDGTLSGRLDNNLTVE 430

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGEL 467
             +    +G   +V +T  + + L GEL
Sbjct: 431 FAADPALMGSYAQVHLTGARATVLLGEL 458


>gi|153816459|ref|ZP_01969127.1| hypothetical protein RUMTOR_02712 [Ruminococcus torques ATCC 27756]
 gi|331087554|ref|ZP_08336485.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Lachnospiraceae bacterium 3_1_46FAA]
 gi|145846201|gb|EDK23119.1| hypothetical protein RUMTOR_02712 [Ruminococcus torques ATCC 27756]
 gi|330400694|gb|EGG80298.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Lachnospiraceae bacterium 3_1_46FAA]
          Length = 483

 Score =  418 bits (1076), Expect = e-115,   Method: Composition-based stats.
 Identities = 155/447 (34%), Positives = 246/447 (55%), Gaps = 15/447 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
            F V ++GCQMN  DS ++  +    GY      + AD ++ NTC +RE A ++VY  LG
Sbjct: 46  TFCVTTFGCQMNARDSEKLVGILEQIGYVEEPDEEKADFVIYNTCTVRENANQRVYGRLG 105

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELL-ER 142
           ++  +K    K    +++ + GC+ Q     E++ +    V+++ G    Y+  EL+  R
Sbjct: 106 QLGRIK----KTNPHMMIALCGCMMQEPEVVEKLKKSYRFVDIIFGTHNIYKFAELIVSR 161

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
              GK V+D     +   E L        RK    + + I  GC+ FC++C+VPY RG E
Sbjct: 162 MNSGKMVIDIWKDTDKIVEDLP-----SERKYPFKSGVNIMFGCNNFCSYCIVPYVRGRE 216

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR    ++ E  +L ++GV E+ LLGQNVN+  GK L+    TF+ LL  + +I  + R
Sbjct: 217 RSRDPKAIIREIERLAEDGVVEVMLLGQNVNS-YGKTLE-HPMTFAQLLREIEKIDKIER 274

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+ TSHP+D+SD LI+       +  +LHLPVQSGS RIL+ MNRR+T   Y ++++++
Sbjct: 275 IRFMTSHPKDLSDELIEVMAQSKKICRHLHLPVQSGSTRILEKMNRRYTKEHYLKLVEKL 334

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R   PDI++++D IVGFPGET++DFR T+D+V K+ Y  AF+F YS R GTP + M +Q+
Sbjct: 335 RKAIPDISLTTDIIVGFPGETEEDFRETLDVVCKVQYDSAFTFIYSKRTGTPAAAMEDQI 394

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GRSPWLQSVVLN 441
            ++V  +R   L ++++           G +  VL+E   +   +L+ GR      V   
Sbjct: 395 SDDVVKDRFGRLLEEVQTISSKMCSRHEGTVQRVLVESCNEHDERLMTGRLSNNLLVHFP 454

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                IG    V + + K     G++V
Sbjct: 455 GDESMIGTFADVSLDECKGFYYIGKIV 481


>gi|28872784|ref|NP_057166.3| CDK5 regulatory subunit-associated protein 1 isoform b [Homo
           sapiens]
 gi|119596725|gb|EAW76319.1| CDK5 regulatory subunit associated protein 1, isoform CRA_b [Homo
           sapiens]
 gi|158257582|dbj|BAF84764.1| unnamed protein product [Homo sapiens]
          Length = 497

 Score =  418 bits (1076), Expect = e-115,   Method: Composition-based stats.
 Identities = 153/488 (31%), Positives = 254/488 (52%), Gaps = 39/488 (7%)

Query: 17  IVDQCI-VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREK 75
           ++D+ +   ++ ++++YGCQMNV D+     +    GY R +++ +AD+I+L TC IREK
Sbjct: 1   MMDELLGRQRKVYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCSIREK 60

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135
           A + +++ L +++ LK  R +    L + + GC+A+   EEIL R  +V+++ GP  Y  
Sbjct: 61  AEQTIWNRLHQLKALKTRRPRSRVPLRIGILGCMAERLKEEILNREKMVDILAGPDAYRD 120

Query: 136 LPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
           LP LL  A  G++  +   S+++ +  +  V          +AF++I  GCD  C++C+V
Sbjct: 121 LPRLLAVAESGQQAANVLLSLDETYADVMPVQTS---ASATSAFVSIMRGCDNMCSYCIV 177

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG---------------- 239
           P+TRG E SR ++ +++E +KL + G+ E+TLLGQNVN++R                   
Sbjct: 178 PFTRGRERSRPIASILEEVKKLSEQGLKEVTLLGQNVNSFRDNSEVQFNSAVPTNLSRGF 237

Query: 240 -----LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP 294
                       F+ LL  +S +   +R+R+T+ HP+D  D +++   + D +   +HLP
Sbjct: 238 TTNYKTKQGGLRFAHLLDQVSRVDPEMRIRFTSPHPKDFPDEVLQLIHERDNICKQIHLP 297

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
            QSGS R+L++M R ++   Y +++  IR   P +++SSDFI GF GET++D   T+ L+
Sbjct: 298 AQSGSSRVLEAMRRGYSREAYVELVHHIRESIPGVSLSSDFIAGFCGETEEDHVQTVSLL 357

Query: 355 DKIGYAQAFSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQI 413
            ++ Y   F F YS R  T     + + V E VK  RL  L    RE+    N   VG  
Sbjct: 358 REVQYNMGFLFAYSMRQKTRAYHRLKDDVPEEVKLRRLEELITIFREEATKANQTSVGCT 417

Query: 414 IEVLIEKHGKEKGK-LVGRSPWLQSVVLNSKN------------HNIGDIIKVRITDVKI 460
             VL+E   K     L GR+     V+                    GD + V+IT    
Sbjct: 418 QLVLVEGLSKRSATDLCGRNDGNLKVIFPDAEMEDVNNPGLRVRAQPGDYVLVKITSASS 477

Query: 461 STLYGELV 468
            TL G ++
Sbjct: 478 QTLRGHVL 485


>gi|160333602|ref|NP_001103849.1| CDK5 regulatory subunit-associated protein 1 [Danio rerio]
 gi|159155698|gb|AAI54732.1| Zgc:162738 protein [Danio rerio]
          Length = 577

 Score =  418 bits (1076), Expect = e-115,   Method: Composition-based stats.
 Identities = 159/480 (33%), Positives = 245/480 (51%), Gaps = 39/480 (8%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ + ++YGCQMN  D+     +    GY R   +  AD+++L TC IREKA + +++ L
Sbjct: 90  RKVYFETYGCQMNTNDTEIAWSILQKAGYSRTLELQKADVVLLVTCSIREKAEQTIWNRL 149

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             +   K    K    L + V GC+A+    E+L +  +V+V+ GP  Y  LP LL  A 
Sbjct: 150 KHLTASKKRIQKHKRSLTIGVLGCMAERLKSELLDQEKLVDVLAGPDAYRDLPRLLSLAH 209

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G+R  +   S+E+ +  +  V   +    G +AF++I  GCD  C++C+VP+TRG E S
Sbjct: 210 GGQRASNVLLSLEETYADVIPV---HQTLEGHSAFVSIMRGCDNMCSYCIVPFTRGRERS 266

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG----------------------KGLDG 242
           R +S +V+E R L D GV EITLLGQNVN++R                            
Sbjct: 267 RPMSSIVEEVRMLSDQGVKEITLLGQNVNSYRDLSKMQFSCSERNTQLSRGFQSVYRTKQ 326

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
               F+DLL  +S I   +R+R+T+ HP+D  D +++   +   +  +LHLPVQSGS RI
Sbjct: 327 GGLRFADLLDRVSLINPNMRIRFTSPHPKDFPDEVLQLIQERSNICKHLHLPVQSGSSRI 386

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           L +M R +T   Y ++++ IR + P +++SSDFI GF  ET++D + T+ L+ ++GY   
Sbjct: 387 LHAMRRGYTREAYLELVENIRKIIPGVSLSSDFIAGFCSETEEDHQQTISLLKEVGYNIG 446

Query: 363 FSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKH 421
           F F YS R  T     + + V   VK  RL  L    RE+    N   +G    VL+E  
Sbjct: 447 FFFTYSMRKKTHAYHRLEDNVPAPVKKRRLEELISVFREKATKVNMTLIGNTQLVLVEGK 506

Query: 422 GKEKG-KLVGRSPWLQSVVLNSKNHNI------------GDIIKVRITDVKISTLYGELV 468
            K    +L GR+     V+    N  +            GD + V+IT     +L G  +
Sbjct: 507 SKRSSEELCGRNDGNVKVIFPKTNLPVQPEKTQMACITPGDYVLVKITSANSQSLRGHAL 566


>gi|296199816|ref|XP_002806791.1| PREDICTED: LOW QUALITY PROTEIN: CDK5 regulatory subunit-associated
           protein 1-like [Callithrix jacchus]
          Length = 538

 Score =  418 bits (1076), Expect = e-115,   Method: Composition-based stats.
 Identities = 156/488 (31%), Positives = 254/488 (52%), Gaps = 39/488 (7%)

Query: 17  IVDQCI-VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREK 75
           ++D+ +   ++ ++++YGCQMNV D+     +    GY R +++ +AD+I+L TC IREK
Sbjct: 42  MMDELLGRQRKVYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCSIREK 101

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135
           A + +++ L +++ LK  R++    L + + GC+A+   EEIL R  +V+V+ GP  Y  
Sbjct: 102 AEQTIWNRLHQLKALKTRRLRSRVPLRIGILGCMAERLKEEILNREKMVDVLAGPDAYRD 161

Query: 136 LPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
           LP LL  A  G++  +   S+++ +  +  V          +AF++I  GCD  CT+C+V
Sbjct: 162 LPRLLAVAESGQQAANVLLSLDETYADVMPVQTS---PSATSAFVSIMRGCDNMCTYCIV 218

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG---------------- 239
           P+TRG E SR ++ +++E RKL + G+ E+TLLGQNVN++R                   
Sbjct: 219 PFTRGRERSRPVASILEEVRKLSEQGLKEVTLLGQNVNSFRDSSEVQFNSAVSTNLSRGF 278

Query: 240 -----LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP 294
                       F+ LL  +S +   +R+R+T+ HP+D  D +++   + D +   +HLP
Sbjct: 279 TANCKTKQGGLRFAHLLDQVSRVDPEMRIRFTSPHPKDFPDEVLQLIHERDNICKQIHLP 338

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
            QSGS R+L++M R ++   Y  ++  IR   P +++SSDFI GF GET++D   T+ L+
Sbjct: 339 AQSGSSRVLEAMRRGYSREAYVALVHHIRESIPGVSLSSDFIAGFCGETEEDHVQTVSLL 398

Query: 355 DKIGYAQAFSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQI 413
            ++ Y   F F YS R  T     + + V E VK  RL  L    RE+    N   VG  
Sbjct: 399 REVQYNMGFLFAYSMRQKTRAYHRLKDDVPEEVKLRRLEELITVFREEATKANQTAVGCT 458

Query: 414 IEVLIEKHGKEK-GKLVGRSPWLQSVVLNSKN------------HNIGDIIKVRITDVKI 460
             VL+E   K     L GR+     V+                    GD + V+IT    
Sbjct: 459 QLVLVEGLSKRSAADLCGRNDGNLKVIFPDAEMEDVSNPGLRVRAQPGDYVLVQITSAGS 518

Query: 461 STLYGELV 468
            TL G ++
Sbjct: 519 QTLKGHVL 526


>gi|51892771|ref|YP_075462.1| 2-methylthioadenine synthetase [Symbiobacterium thermophilum IAM
           14863]
 gi|81388877|sp|Q67NX5|RIMO_SYMTH RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|51856460|dbj|BAD40618.1| 2-methylthioadenine synthetase [Symbiobacterium thermophilum IAM
           14863]
          Length = 485

 Score =  418 bits (1075), Expect = e-115,   Method: Composition-based stats.
 Identities = 146/455 (32%), Positives = 225/455 (49%), Gaps = 26/455 (5%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P +    S GC  N+ D+  M  +  + GY+  N  ++AD++V+NTC   + A ++    
Sbjct: 18  PVKVGFISLGCAKNLVDTESMIGLLRNTGYQITNRAEEADVLVVNTCGFIDAAKQESVDA 77

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +      K      G    +VVAGC+    GEE+ R  P ++ +VG   Y R+ E++   
Sbjct: 78  ILEAAQHKTR----GRCQALVVAGCMVPRYGEELAREIPEIDALVGTADYPRIGEVVAGI 133

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNR---KRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
             G+RV           +  SI D  + R     G TA+L I EGCD  C FC +P  RG
Sbjct: 134 LAGQRVQQIS-------DPDSITDWNFERVLATPGYTAYLKIAEGCDCACAFCSIPLMRG 186

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
              SR +  +VDEAR+L   GV E+ ++ Q+   + G  L   K   + LL  L+++ G+
Sbjct: 187 RHRSRPIESIVDEARRLAGMGVRELVVISQDTT-YYGLDLY-RKPMLARLLRELAQVDGI 244

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
             +R   S+P  ++D LI+       ++ YL LP+Q GS+R+L+ MNR   A  Y +++ 
Sbjct: 245 RWIRIHYSYPTRITDELIEVIVTEPKVLNYLDLPLQHGSNRVLRIMNRPANAEGYLRLVQ 304

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R   PDI + S FI G PGET++DF   +D +    +     F YS   GT    M E
Sbjct: 305 KLRERVPDICLRSTFIAGHPGETEEDFELLLDFLRACEFDHVGVFAYSQEEGTKAGQM-E 363

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-----GKLVGRSPWL 435
           Q+ E V+  R     +  +E     N   VG+ +EVL+E    +      G+  G+SP +
Sbjct: 364 QLPEEVRLARRDRAMEVQQEIARRRNQLQVGRELEVLVEGRSPQGRGWFVGRCYGQSPGI 423

Query: 436 QSVVL----NSKNHNIGDIIKVRITDVKISTLYGE 466
             VVL           GD+++VRIT V+   L GE
Sbjct: 424 DGVVLFRAPAGAELKPGDMVQVRITGVQDYDLLGE 458


>gi|325289891|ref|YP_004266072.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Syntrophobotulus
           glycolicus DSM 8271]
 gi|324965292|gb|ADY56071.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Syntrophobotulus
           glycolicus DSM 8271]
          Length = 442

 Score =  418 bits (1075), Expect = e-115,   Method: Composition-based stats.
 Identities = 155/448 (34%), Positives = 247/448 (55%), Gaps = 13/448 (2%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
            +++   SYGCQM+  D+     +   QGYE+   ++ ADLI++NTC +RE A  K+   
Sbjct: 5   KKKYLTLSYGCQMSERDAETFSSVARQQGYEKTTELEQADLIIINTCCVRESAENKIIGK 64

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLE 141
           +G+++N K         L + V GC+ Q  G  E++ +R+  V++  G        +LL+
Sbjct: 65  IGQLKNYKEK----KPSLKIAVCGCMVQQPGTAEKLSKRAAHVDIWTGTNDIGNFAQLLK 120

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
            A    +++      +   +R          K    A + I  GC+ +C +C+VP+ RG 
Sbjct: 121 SASENSKIICVSQEAQKNGDREISTAEYGKLK----ANVNIMYGCNNYCAYCIVPFVRGE 176

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR    + +E   L+  G  E+TLLGQNVN++  +  DG    FS+LL  + ++  L 
Sbjct: 177 ERSRPKEDICEEIGVLVQGGCKEVTLLGQNVNSYGLR--DGFAYDFSNLLQEVDQLPNLD 234

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+ TSHP+D+SD LIK   +   +  ++HLP Q+GS+ IL++MNR +T   Y + I  
Sbjct: 235 RIRFITSHPKDLSDLLIKTIAEGQKICEHIHLPFQAGSNTILRAMNRNYTREYYLERIKA 294

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I  + P++ +++D IVGFPGET++DF  T+DLV K+ ++QAF+F YS R GT  ++  EQ
Sbjct: 295 ILGMIPEVRLTTDIIVGFPGETEEDFEQTIDLVQKVHFSQAFTFMYSKRSGTAAASYEEQ 354

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440
           +  +VK  RL  L      + +S+ +   G+  EVL+E   K   + L GR+   + VV 
Sbjct: 355 IPLDVKKRRLQRLMSIQNARSLSWREQMTGKEYEVLVEGPSKNNPEMLTGRTRGNEVVVF 414

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                  G ++ VRI  V   TL+GELV
Sbjct: 415 PGHLDLAGTLVLVRIQSVNSWTLWGELV 442


>gi|116073345|ref|ZP_01470607.1| hypothetical protein RS9916_32882 [Synechococcus sp. RS9916]
 gi|116068650|gb|EAU74402.1| hypothetical protein RS9916_32882 [Synechococcus sp. RS9916]
          Length = 473

 Score =  418 bits (1075), Expect = e-115,   Method: Composition-based stats.
 Identities = 177/454 (38%), Positives = 260/454 (57%), Gaps = 23/454 (5%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           +++ ++GCQMN  DS RM  +  S GY    +  DADL++ NTC IR+ A +KVYS+LGR
Sbjct: 29  YWITTFGCQMNKADSERMAGILESMGYCEATAELDADLVLYNTCTIRDNAEQKVYSYLGR 88

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
               K    +   +L +VVAGCVAQ EGE +LRR P +++V+GPQ   RL  LL +   G
Sbjct: 89  QAQRK----RSNPNLTLVVAGCVAQQEGESLLRRVPELDLVMGPQHANRLETLLTQVEAG 144

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           ++VV T+       E L+       R   + A++ +  GC++ CT+CVVP  RG E SR 
Sbjct: 145 QQVVATEE--HHILEDLTTAR----RDSAICAWVNVIYGCNERCTYCVVPSVRGKEQSRM 198

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG------EKCTFSDLLYSLSEIKGL 260
              +  E   L   G  EITLLGQN++A  G+ L G       + T +DLL+ + ++ G+
Sbjct: 199 PEAIKLEMEGLAAQGFKEITLLGQNIDA-YGRDLPGITPEGRRQHTLTDLLHFVHDVDGV 257

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+ TSHPR  ++ LI A  DL  L  + H+P QSG + +L+SM R +T   YR+IID
Sbjct: 258 ERIRFATSHPRYFTERLIDACADLPKLCEHFHIPFQSGDNDVLRSMARGYTVERYRRIID 317

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           RIR   PD ++S+D IV FPGETD  +R T+DL+++IG+ Q  +  YSPR  TP ++   
Sbjct: 318 RIRERMPDASLSADVIVAFPGETDAQYRRTLDLIEEIGFDQVNTAAYSPRPNTPAADWDN 377

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVV 439
           Q+ E VK  RL  +   +       N    G+I EVL E    K+  +L+GR+   +   
Sbjct: 378 QLPEEVKVARLQEINALVERCARERNARYDGRIEEVLAEGINPKDPSQLMGRTRTNRLTF 437

Query: 440 LNSKNH-----NIGDIIKVRITDVKISTLYGELV 468
            +++         GD+++VRI  V+  +L G  V
Sbjct: 438 FSAQGADGCSFKPGDLVQVRIDAVRSFSLSGTPV 471


>gi|294787007|ref|ZP_06752261.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Parascardovia denticolens
           F0305]
 gi|294485840|gb|EFG33474.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Parascardovia denticolens
           F0305]
          Length = 481

 Score =  418 bits (1075), Expect = e-114,   Method: Composition-based stats.
 Identities = 162/449 (36%), Positives = 251/449 (55%), Gaps = 22/449 (4%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVN----SMDDADLIVLNTCHIREKAAEKVYS 82
           ++V + GCQMNV+DS R+  +  S GY + N       D DLIV+NTC +RE A+ ++Y 
Sbjct: 30  YYVHTLGCQMNVHDSERIAGVLESDGYVKANQVQIDSHDLDLIVMNTCAVRENASNRMYG 89

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            LG+   LK    +E   L + V GC+AQ + + I  R+P V+ V G +    L  LL++
Sbjct: 90  TLGQWAELK----RENPRLQIAVGGCMAQKDRQRITERAPWVDAVFGTKNIGSLTGLLDK 145

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           AR  +R      +  D F     V    +R   V+A++ I  GC+  CTFC+VP  RG E
Sbjct: 146 ARAERRSQVQVATDLDYFPSQLPV----SRASRVSAWVAISMGCNNTCTFCIVPSVRGRE 201

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
             R    V+DE ++ +D G  E+TLLGQNVN++      G++  FS LL +  +I GL R
Sbjct: 202 RDRRPGDVLDEIQRCVDAGSKEVTLLGQNVNSYGYSM--GDRYAFSKLLRACGKIDGLER 259

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+T+ HP   +D +I+A  +   +M  LH+P+QSGSDRIL++M R +   ++  I+ ++
Sbjct: 260 VRFTSPHPAAFTDDVIEAMAETPNVMHQLHMPLQSGSDRILRAMRRSYRTAKFMDILGKV 319

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+  PD  IS+D IVGFPGET++DF+ T+DL+ +  +A A++F+YSPR GTP + +L Q+
Sbjct: 320 RAAMPDAQISTDVIVGFPGETEEDFQRTLDLISQARFASAYTFEYSPRPGTPAA-LLPQI 378

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG---KLVGRSPWLQSVV 439
             +V  +R   L     E       A  G+ +EV++   G++ G   ++ GR      V 
Sbjct: 379 PADVMRDRYTRLHDLQEEITEEGLKAFRGKEVEVMVTGQGRKDGNTHRITGREKTGTLVH 438

Query: 440 LNSKN----HNIGDIIKVRITDVKISTLY 464
           +          +GD +   +TD     L 
Sbjct: 439 IGPPEGYPAARVGDFVTCTVTDSARHYLI 467


>gi|260683603|ref|YP_003214888.1| putative radical sam protein [Clostridium difficile CD196]
 gi|260687263|ref|YP_003218397.1| putative radical sam protein [Clostridium difficile R20291]
 gi|260209766|emb|CBA63567.1| putative radical sam protein [Clostridium difficile CD196]
 gi|260213280|emb|CBE04822.1| putative radical sam protein [Clostridium difficile R20291]
          Length = 429

 Score =  418 bits (1075), Expect = e-114,   Method: Composition-based stats.
 Identities = 162/437 (37%), Positives = 260/437 (59%), Gaps = 14/437 (3%)

Query: 36  MNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRI 95
           MN +DS ++  M    GY+    ++++DLI+ NTC +RE A  KVY  LG++++LK    
Sbjct: 1   MNEHDSEKLCSMLEEMGYQMSMMVEESDLIIYNTCAVRENAELKVYGNLGQLKHLKGK-- 58

Query: 96  KEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTD 153
               D+ + V GC+ Q     EE+ ++   V+++ G    Y+ P+LL  +    +++   
Sbjct: 59  --NPDMKIAVCGCMMQQPHVVEELRKKYKHVDLIFGTHNLYKFPQLLTESINSDKMLVDV 116

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           + V+ +     I     NRK  + AF+ I  GC+ FCT+C+VPYTRG E SR+   +++E
Sbjct: 117 WDVDGEV----IEGLRSNRKFELKAFVNIMYGCNNFCTYCIVPYTRGRERSRTPEDIINE 172

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
            ++L+ NG  EITLLGQNV++  GK L+    +FS+LL  +++I+G+ R+R+ TSHP+D+
Sbjct: 173 IKELVANGTKEITLLGQNVDS-YGKTLE-NPVSFSELLRKVNDIEGIERVRFMTSHPKDI 230

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
           SD +I A  D D +  +LHLP+Q GS  +LK MNR +T   Y +II++ +   P IA S+
Sbjct: 231 SDEVIYAIRDCDKVCEFLHLPIQCGSSSLLKKMNRHYTKEYYLEIIEKAKKEVPGIAFST 290

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLC 393
           D ++GFPGET++D   T+D+V+K+ Y  AF+F YS R GTP + M  Q+ E++K +R   
Sbjct: 291 DLMIGFPGETEEDLLDTLDVVEKVRYDSAFTFIYSKRQGTPAAKMENQIPEDIKHDRFNR 350

Query: 394 LQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNSK-NHNIGDII 451
           + + +       ND    +I+EVL+E   K    K  GR+   + V      +  IG ++
Sbjct: 351 VLEAVNRISAEINDGYKDRIVEVLVEGRSKNNENKFAGRTRQNKLVNFEGGNDDLIGKLV 410

Query: 452 KVRITDVKISTLYGELV 468
            V+IT+ +  +L G LV
Sbjct: 411 MVKITEPRTFSLNGILV 427


>gi|284044702|ref|YP_003395042.1| RNA modification enzyme, MiaB family [Conexibacter woesei DSM
           14684]
 gi|283948923|gb|ADB51667.1| RNA modification enzyme, MiaB family [Conexibacter woesei DSM
           14684]
          Length = 443

 Score =  418 bits (1074), Expect = e-114,   Method: Composition-based stats.
 Identities = 163/446 (36%), Positives = 249/446 (55%), Gaps = 18/446 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +R+ V ++GCQMN +DS RM+ M  S GY      D ADLI+ NTC IRE A  +  + L
Sbjct: 2   KRYHVTTFGCQMNEHDSERMKGMLESLGYREAPDADVADLILFNTCSIREAADSRFKAHL 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           G  +  K    +E  ++++ V GC AQ+  +E+  + P V+V  GP   ++L E L    
Sbjct: 62  GHAKRRK----RERPEVVIGVGGCWAQSVKDEVFEQFPFVDVAFGPGQVHKLAEFL---- 113

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
             + +    Y   + F      D    R R    +  I  GC+  C++C+VP TRG ++ 
Sbjct: 114 TSESLTAQGYFEFEGF----TGDLPEKRAREFQGWTQISVGCNMACSYCIVPSTRGRDVG 169

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK---CTFSDLLYSLSEIKGLV 261
           R L  +V +  ++   GV E+TLLGQNVNA  G+ L        TF+DLL ++  I G+ 
Sbjct: 170 RPLGVLVADVERMASEGVTEVTLLGQNVNA-YGRDLHRRGFPSATFADLLSAVDAIDGIR 228

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+RYT+ HP+DM + +I+AH +L+ L  ++HLP+QSGS R+LK+M R ++   Y   +  
Sbjct: 229 RIRYTSPHPQDMKEDVIRAHAELEALCEHVHLPLQSGSSRVLKAMRRTYSRERYLDRVAL 288

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R   PD+AI++D IVGFPGETD+DF  T+ L +++ Y  AF+F YSPR  T  + + +Q
Sbjct: 289 LREHVPDVAITTDIIVGFPGETDEDFAQTLSLCEEVAYDGAFTFVYSPRRETEAATLPDQ 348

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVL 440
           V   VK ER+  L + ++ +        VG+ +EVL+E   + +  +L GRS   + V  
Sbjct: 349 VPHEVKVERMDRLVEVIQRRAKERAQRFVGRTVEVLVEGPSRTDPTRLRGRSRHNKVVNF 408

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGE 466
           +      GD + V +      TL GE
Sbjct: 409 SG-LAQPGDYVHVDVESATSQTLMGE 433


>gi|86609485|ref|YP_478247.1| tRNA modifying protein [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86558027|gb|ABD02984.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 494

 Score =  418 bits (1074), Expect = e-114,   Method: Composition-based stats.
 Identities = 130/447 (29%), Positives = 226/447 (50%), Gaps = 19/447 (4%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
             V   GC+ N  D+  M  +    GY      + A+ +++NTC   E A  +  S L  
Sbjct: 53  VAVLHLGCEKNRVDTEHMLGLLAQAGYRVDGDEESANYVIVNTCSFIEAARRESVSTLME 112

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           +               +++AGC+AQ   EE+L+  P    +VG   Y+++ +++ER   G
Sbjct: 113 LAVQGKK---------IIIAGCLAQHFQEELLQEIPEAVAIVGTGDYHQIVQIIERVERG 163

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           +RV     S++   +        Y       A+L + EGC+  C+FC++P+ RG + SRS
Sbjct: 164 ERVNAVTSSLDYIADETVP---RYRTTHAPVAYLRVAEGCNYRCSFCIIPHLRGDQRSRS 220

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
           +  ++ EA +L + GV E+ L+ Q +    G  L GE    +DL+ +L +I  +  +R  
Sbjct: 221 IESILREAEQLAEEGVQELILISQ-ITTHYGIDLYGEP-RLADLIRALGKIP-IPWIRML 277

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
            ++P  ++  +++A  +    +PYL LP+Q    +ILK+MNR        ++I+R+R   
Sbjct: 278 YAYPTGVTPAVVEAIQETPNFLPYLDLPLQHSHPQILKAMNRPWQGQVNDRVIERLRQAL 337

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           P+  + + FIVGFPGET++ F+  +D V +  +     F +SP  GTP  ++  QV E V
Sbjct: 338 PNAVLRTSFIVGFPGETEEHFQHLLDFVQRHQFDHVGVFTFSPEEGTPAYHLPHQVPEAV 397

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVLNS 442
           K ER   L +  +      N   VG+++ VL+E+     G+ +GRS    P +  VV   
Sbjct: 398 KQERRARLMQVQQGITFRRNREQVGRVVPVLLEQENPRTGEWIGRSPRFAPEVDGVVYVQ 457

Query: 443 KNHNIGDIIKVRITDVKISTLYGELVV 469
              ++G ++ V+IT  +   L+G++V 
Sbjct: 458 GQGSLGSLVPVQITRAEPYDLFGQVVA 484


>gi|312898810|ref|ZP_07758198.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Megasphaera
           micronuciformis F0359]
 gi|310619972|gb|EFQ03544.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Megasphaera
           micronuciformis F0359]
          Length = 453

 Score =  418 bits (1074), Expect = e-114,   Method: Composition-based stats.
 Identities = 153/435 (35%), Positives = 243/435 (55%), Gaps = 12/435 (2%)

Query: 36  MNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRI 95
           MN  DS R        GY      + AD+I++NTC +RE A +KV   +G  ++LK    
Sbjct: 1   MNESDSERYAGQLEELGYTPTEDPELADVILMNTCCVRETAEDKVLGKIGEFKHLKTR-- 58

Query: 96  KEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYS 155
               DL++ V GC+AQ   + + +R+P +++V+G    ++L +L++     K        
Sbjct: 59  --NKDLILAVTGCMAQEWQDRLFKRAPHLDLVIGTHNIHKLIDLIKDKEGQKESHMLATE 116

Query: 156 VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEAR 215
           +ED             R +   A++ I  GC+KFCT+C+VPY RG E+SR L ++++E R
Sbjct: 117 MEDNIFHAVPT----KRFQKFFAWVPIMNGCNKFCTYCIVPYVRGREVSRPLEEIIEEIR 172

Query: 216 KLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSD 275
            L   G  EITLLGQNVN++     DG    FS LLY++ +I G+ R+RY TSHP+DM+ 
Sbjct: 173 NLAKEGYKEITLLGQNVNSYGLDFKDG--TDFSALLYAIEDIDGIERVRYMTSHPKDMTF 230

Query: 276 CLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDF 335
            +I A      ++ ++HLPVQSGS  +LK MNR +T   Y +++  IR   P   +++D 
Sbjct: 231 TMIDAIAQCKKVVSHIHLPVQSGSTELLKRMNRGYTTEHYEELVSYIREKMPQAVLTTDI 290

Query: 336 IVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQ 395
           IVGFPGET+  F+ T+DL+ ++ Y  A++F YSPR GTP + M  Q+ ++ K+ RL  L 
Sbjct: 291 IVGFPGETEAMFQETLDLLRRVRYDMAYTFIYSPRTGTPAATMDNQIPQDEKSRRLKRLA 350

Query: 396 KKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVL-NSKNHNIGDIIKV 453
               E  +++N    G+  EV++E   K ++    GR+   + ++  N     +GD I+V
Sbjct: 351 DVQNEISLAYNVEMEGKDYEVIVEGPTKNDENHWFGRTRGNKMIIWENDGTSAVGDTIRV 410

Query: 454 RITDVKISTLYGELV 468
            +   +   L G ++
Sbjct: 411 HVDKGQTWVLKGHVL 425


>gi|238019356|ref|ZP_04599782.1| hypothetical protein VEIDISOL_01220 [Veillonella dispar ATCC 17748]
 gi|237864055|gb|EEP65345.1| hypothetical protein VEIDISOL_01220 [Veillonella dispar ATCC 17748]
          Length = 426

 Score =  418 bits (1074), Expect = e-114,   Method: Composition-based stats.
 Identities = 152/434 (35%), Positives = 236/434 (54%), Gaps = 13/434 (2%)

Query: 36  MNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRI 95
           MN  DS R+     S GY     ++ ADLI+LNTC +RE A  KVY  +G +  LK    
Sbjct: 1   MNTADSERLSHQLESVGYTPTEDVEIADLILLNTCAVRENAETKVYGRIGELMRLKRK-- 58

Query: 96  KEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYS 155
               +L++ V GC+AQ    E+ +R+P +++V+G      + E++E  + G       + 
Sbjct: 59  --NKNLILAVTGCMAQKNQAEMFKRAPHIDIVLGTHNIQHINEMIEEVQRGHT-----HQ 111

Query: 156 VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEAR 215
           +    +   + +          A++ I  GC+KFCT+C+VP+ RG EISR +  +V E  
Sbjct: 112 INVDMDNSVLPELEAKPNGTFYAWVPIMNGCNKFCTYCIVPHVRGREISRPVEAIVKEVT 171

Query: 216 KLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSD 275
           +L   G  EITLLGQNVN++     DG    F  L+ +L  I G+ R+RY TSHP+DM+ 
Sbjct: 172 ELGAKGFKEITLLGQNVNSYGLDFKDG--TDFGTLVDALDGIPGIERIRYMTSHPQDMTK 229

Query: 276 CLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDF 335
            +I A G    ++ +LHLP+QSGS+RILK MNR +T   Y++++   R    D+ +++D 
Sbjct: 230 SMIDALGRSSNIVTHLHLPIQSGSNRILKKMNRHYTVEHYKELLSYCREKIKDVVVTTDI 289

Query: 336 IVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQ 395
           I GFPGET++DF AT+ L+  + Y  A++F YS R GTP + M +QV E VK  RL  L 
Sbjct: 290 IAGFPGETEEDFLATLQLLKDVRYDMAYTFIYSKRSGTPAATMDDQVPEEVKRVRLQTLM 349

Query: 396 KKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLNSKNHN-IGDIIKV 453
               E     N    GQ+ ++++E    +++    GR+   + V+    +   IG+ +  
Sbjct: 350 DVQNEISYELNKPMEGQVFDIIVEGPSPRDEDMWFGRTSGNKMVLFPKDDSLSIGETVPA 409

Query: 454 RITDVKISTLYGEL 467
            I   +    YG +
Sbjct: 410 YIDKAQTWVCYGTI 423


>gi|331089440|ref|ZP_08338339.1| ribosomal protein S12 methylthiotransferase rimO [Lachnospiraceae
           bacterium 3_1_46FAA]
 gi|330404808|gb|EGG84346.1| ribosomal protein S12 methylthiotransferase rimO [Lachnospiraceae
           bacterium 3_1_46FAA]
          Length = 440

 Score =  418 bits (1074), Expect = e-114,   Method: Composition-based stats.
 Identities = 142/449 (31%), Positives = 223/449 (49%), Gaps = 16/449 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC  N+ D+  M  +  S+GYE  +    AD+IV+NTC     A E+    + 
Sbjct: 2   KILFISLGCDKNLVDTEVMLGLLASRGYEMTDDERQADIIVINTCCFIHDAKEESIQNIL 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +   K    K G    ++V GC+AQ   +EIL   P V+ V+G   Y ++ + ++RA  
Sbjct: 62  EMAEYK----KSGQVKALIVTGCLAQRYRQEILDEIPEVDEVLGTTAYDKILDAVDRALE 117

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G++ +     + D                G  A+L I EGCDK CT+C++P  RG   S 
Sbjct: 118 GEQGI----ILSDLNALPVSGAKRLVTTGGHFAYLKIAEGCDKHCTYCIIPKIRGNFRSV 173

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            + +++ EA++L + GV E+ L+ Q      GK L GEKC    L+  L +I G+  +R 
Sbjct: 174 PMERLIKEAKELAEQGVKELILVAQETT-LYGKDLYGEKC-LHRLVEELCKIAGIRWIRI 231

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
              +P +++D LI+       +  YL LP+Q  SD ILK M RR +  E   I+ ++R  
Sbjct: 232 LYCYPEEITDELIEVIKKEPKVCHYLDLPIQHASDSILKRMGRRTSKQELTDIVKKLRKE 291

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            PDI + +  I GFPGET+D     M  VD++ + +   F YSP   TP + M +Q+ E 
Sbjct: 292 IPDICLRTTLITGFPGETEDQHEELMQFVDEMEFDRLGVFTYSPEEDTPAAVMPDQIAEE 351

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVLN 441
           VK ER   L +  +E      +  +G+ + V+IE    ++   VGR+    P +  ++  
Sbjct: 352 VKEERQADLMELQQEIAFDNAENMIGREMLVMIEGKVADENAYVGRTYRDAPNVDGLIFI 411

Query: 442 SKNHNI--GDIIKVRITDVKISTLYGELV 468
           +    +  GD  KV+IT      L GEL+
Sbjct: 412 NTEEELISGDFAKVKITGALEYDLIGELL 440


>gi|194476570|ref|YP_002048749.1| hypothetical protein PCC_0084 [Paulinella chromatophora]
 gi|171191577|gb|ACB42539.1| hypothetical protein PCC_0084 [Paulinella chromatophora]
          Length = 470

 Score =  418 bits (1074), Expect = e-114,   Method: Composition-based stats.
 Identities = 173/455 (38%), Positives = 266/455 (58%), Gaps = 23/455 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
            +++ ++GCQMN  DS RM  +  S GY+   S  +ADL++ NTC IR+ A +KVYS+LG
Sbjct: 27  TYWITTFGCQMNKADSERMAGILESIGYQIAPSEHEADLVLYNTCTIRDSAEQKVYSYLG 86

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R    K    +    ++++VAGCVAQ EG  +LRR P +++V+GPQ   RL  LL +   
Sbjct: 87  RQAQRK----RTNPHIILIVAGCVAQQEGASLLRRVPEIDLVMGPQQTNRLSYLLSQVEN 142

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G++V+ T+ S     E ++       R+  V  ++ +  GC++ CT+CVVP  RG E SR
Sbjct: 143 GQQVIATEESY--ILEDIT----NARRESSVCGWVNVVYGCNERCTYCVVPSVRGKEQSR 196

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG------EKCTFSDLLYSLSEIKG 259
               +  E   L   G  E+TLLGQNV+A  G+ L G         T + LLY + E+KG
Sbjct: 197 LPESIKMEMEILATQGFREVTLLGQNVDA-YGRDLAGISPEGRRHNTLTALLYFVHEVKG 255

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           + R+R+ TSHPR  ++ LI+A  +L  +  + H+P QSG D +LK+M R +    Y +I+
Sbjct: 256 INRIRFATSHPRYFTERLIEACSNLSKVCEHFHIPCQSGDDEVLKTMARGYNVDRYYRIV 315

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
           DRIRS  PD +IS+D IV FPGETD  ++ T++LV+K+G+ Q  +  YSPR  TP SN  
Sbjct: 316 DRIRSRMPDASISADIIVAFPGETDTQYQRTLELVEKVGFDQVNTAAYSPRPNTPASNWS 375

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSV 438
            QVDE +K ERL  L   + ++    +   + +I E+LIE  + K+  + +GR+   +  
Sbjct: 376 IQVDERIKVERLQQLNSLVEKKAFERSKRYLNRIEEILIEGLNPKDSNQFMGRTRSNRLT 435

Query: 439 VLN-----SKNHNIGDIIKVRITDVKISTLYGELV 468
                    K++  GD++ V+I +++  +L G L+
Sbjct: 436 FFPTHTSKGKSYTYGDLVMVKIKEIRAFSLTGTLL 470


>gi|257063789|ref|YP_003143461.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
           [Slackia heliotrinireducens DSM 20476]
 gi|256791442|gb|ACV22112.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
           [Slackia heliotrinireducens DSM 20476]
          Length = 451

 Score =  418 bits (1074), Expect = e-114,   Method: Composition-based stats.
 Identities = 175/457 (38%), Positives = 265/457 (57%), Gaps = 13/457 (2%)

Query: 18  VDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA 77
           ++Q +  + F+V +YGCQMN +DS R+  M  + G  R +  +D+++++  TC +RE A 
Sbjct: 1   MNQFLTGRSFYVFTYGCQMNEHDSERIVGMLEACGAHRTDVFEDSEIVIFMTCCVREAAD 60

Query: 78  EKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLP 137
            ++   +  I+N+   R  E    +V + GC+ Q +G++++     V+VV G Q   RLP
Sbjct: 61  VRLRGQVNSIKNVPLPRTSELKKRVVCIGGCIGQRDGQQLIDDMHHVDVVFGTQNIERLP 120

Query: 138 ELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197
            L+         +       D F      D    R+    A+L I  GC+ FCT+C+VPY
Sbjct: 121 YLINGVLSRGGHIAEVQEESDTF----STDLPSKREHDWAAWLPITVGCNNFCTYCIVPY 176

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257
            RG E SR++  VV +A+ L+  GV EITLLGQNVN+  G+ L GE   F+D+L  ++  
Sbjct: 177 VRGRERSRAIESVVADAQALVAEGVQEITLLGQNVNS-YGRDLYGEP-RFADVLKGVAA- 233

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
            G+ RLR+ TSHP+D++D +I+A G L  LMP LHLPVQSGSD ILK M+R +T   Y  
Sbjct: 234 TGVPRLRFATSHPKDLTDEVIEAFGTLGNLMPALHLPVQSGSDAILKRMHRSYTVEHYLG 293

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
           +ID++R+  PDI++S+D IVGFPGET++DF+AT DLV+K+GY+Q F+F YSPR GTP + 
Sbjct: 294 LIDKLRAACPDISLSTDIIVGFPGETEEDFQATYDLVEKVGYSQVFTFIYSPREGTPAAK 353

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GRSPWLQ 436
           M +    +V  ER   L + ++++    N     + ++VL+E   +    ++ GRSP   
Sbjct: 354 MKDDTPRSVIQERFERLVQMVQDKAYEQNQRFADRTLDVLVEGVSQRNDSIIAGRSPHNA 413

Query: 437 SVVLNSKNHNI-----GDIIKVRITDVKISTLYGELV 468
            V              G II V + + K   L G +V
Sbjct: 414 MVHAPIPEGKTIEQLKGTIIPVHVDEAKTWYLSGTVV 450


>gi|21902527|ref|NP_663773.1| CDK5 regulatory subunit-associated protein 1 [Rattus norvegicus]
 gi|32129430|sp|Q9JLH6|CK5P1_RAT RecName: Full=CDK5 regulatory subunit-associated protein 1;
           AltName: Full=CDK5 activator-binding protein C42
 gi|7330738|gb|AAF60223.1|AF177477_1 CDK5 activator-binding protein [Rattus norvegicus]
 gi|45219720|gb|AAH66666.1| Cdk5rap1 protein [Rattus norvegicus]
 gi|149030944|gb|EDL85971.1| CDK5 regulatory subunit associated protein 1, isoform CRA_a [Rattus
           norvegicus]
 gi|149030945|gb|EDL85972.1| CDK5 regulatory subunit associated protein 1, isoform CRA_a [Rattus
           norvegicus]
          Length = 586

 Score =  418 bits (1074), Expect = e-114,   Method: Composition-based stats.
 Identities = 154/479 (32%), Positives = 246/479 (51%), Gaps = 38/479 (7%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ ++++YGCQMNV D+     +    GY R +++ +AD+I+L TC IREKA + +++ L
Sbjct: 97  RKVYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCSIREKAEQTIWNRL 156

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            +++ LK  R +    L + + GC+A+    EIL R  +V+++ GP  Y  LP LL    
Sbjct: 157 HQLKVLKAKRPRSRVPLRIGILGCMAERLKGEILNREKMVDLLAGPDAYRDLPRLLAVVE 216

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G++  +   S+++ +  +  V          +AF++I  GCD  C++C+VP+TRG E S
Sbjct: 217 SGQQAANVLLSLDETYADIMPVQTS---PSATSAFVSIMRGCDNMCSYCIVPFTRGRERS 273

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAW-----------------RGKGLDGEKC-- 245
           R ++ ++DE RKL + G+ E+TLLGQNVN++                 RG   + +    
Sbjct: 274 RPVASILDEVRKLSEQGLKEVTLLGQNVNSFRDNSEVQFSSTGSANLSRGFTTNYKPKQG 333

Query: 246 --TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
              FS LL  +S I   +R+R+T+ HP+D  D +++   +   +   +HLP QSGS R+L
Sbjct: 334 GLRFSHLLDQVSRIDPEMRIRFTSPHPKDFPDEVLQLIRERHNICKQIHLPAQSGSSRVL 393

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           ++M R ++   Y  ++  IR   P + +SSDFI GF GET+DD   T+ L+ ++ Y   F
Sbjct: 394 EAMRRGYSREAYVALVHHIREAIPGVGLSSDFITGFCGETEDDHLQTVSLLREVQYNTGF 453

Query: 364 SFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422
            F YS R  T     + + V E VK  RL  L    RE+    N   VG    VL+E   
Sbjct: 454 LFAYSMRQKTRAYHRLKDDVPEEVKLRRLEELITVFREEASKVNATSVGCTQLVLVEGFS 513

Query: 423 KEKGK-LVGRSPWLQSVVLNSKN------------HNIGDIIKVRITDVKISTLYGELV 468
           K     L GR+     V+                    GD + V+I      TL G ++
Sbjct: 514 KRSTTDLCGRNDANLKVIFPDAEVEDITDPGLKVRAQPGDYVLVKIISASSQTLKGHIL 572


>gi|124026430|ref|YP_001015545.1| 2-methylthioadenine synthetase [Prochlorococcus marinus str.
           NATL1A]
 gi|229890598|sp|A2C471|MIAB_PROM1 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|123961498|gb|ABM76281.1| 2-methylthioadenine synthetase [Prochlorococcus marinus str.
           NATL1A]
          Length = 463

 Score =  418 bits (1074), Expect = e-114,   Method: Composition-based stats.
 Identities = 163/453 (35%), Positives = 249/453 (54%), Gaps = 21/453 (4%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           +++ ++GCQMN  DS RM  +    GY        ADL++ NTC IR+ A +KVYS+LGR
Sbjct: 21  YWITTFGCQMNKADSERMSGILEYMGYYPAEEELKADLVLYNTCTIRDSAEQKVYSYLGR 80

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
               K S      +L +VVAGC+AQ EGE +LRR P +++++GPQ   RL  LL +   G
Sbjct: 81  QAIRKRSL----PNLKIVVAGCLAQQEGESLLRRVPEIDLLMGPQHCNRLESLLNQVDSG 136

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           ++V+ T    E++F    I      R      ++ I  GC++ CT+CVVP  RG E SR+
Sbjct: 137 QQVLAT----EEQFILEDITTP--RRDSSFCGWVNIIYGCNERCTYCVVPSVRGKEQSRT 190

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK-----CTFSDLLYSLSEIKGLV 261
              +  E   L  +G  EITLLGQN++A+        K      T S LL  + +I+G+ 
Sbjct: 191 PEAIKSEVEDLAKSGYKEITLLGQNIDAYGRDFQSQNKEASAQITLSYLLKYIHDIEGIE 250

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+ TSHPR  +  LI    +L  +  + H+P QSGS++ILK+M R +T   Y+ II+ 
Sbjct: 251 RIRFATSHPRYFTKELIDTCSELPKVCEHFHIPFQSGSNKILKNMGRGYTIESYKNIINY 310

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I+S  P  AIS D IV FPGE++ D+  T+ L+D+I +    +  YSPR  TP +    Q
Sbjct: 311 IKSKIPKAAISGDAIVAFPGESETDYEQTLSLIDEIKFDHVNTAAYSPRPNTPAATWPRQ 370

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLVGRSPWLQSVVL 440
           ++E++K +RL  +   +       N        E+LIE    +   +L+GR+   +    
Sbjct: 371 LNEDIKVKRLREINSLVENIAKERNQRYKNTSQEILIENINPKDSFQLMGRTRTNRLTFF 430

Query: 441 N-----SKNHNIGDIIKVRITDVKISTLYGELV 468
                    + +G++IKV+ITDV+  +L  +L+
Sbjct: 431 PRSLENGVENKLGELIKVKITDVRPFSLTAKLL 463


>gi|291522428|emb|CBK80721.1| SSU ribosomal protein S12P methylthiotransferase [Coprococcus catus
           GD/7]
          Length = 454

 Score =  417 bits (1073), Expect = e-114,   Method: Composition-based stats.
 Identities = 138/449 (30%), Positives = 226/449 (50%), Gaps = 15/449 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
             F  S GC  N+ DS  M  +  + G+  V+   +AD+IV+NTC     A E+    + 
Sbjct: 10  TIFFVSLGCDKNLVDSEVMLGILRAHGFTLVDDEIEADIIVVNTCSFIHDAKEESIQTIL 69

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +  +K+S         ++V GC+A+   +EI+     V+ V+G  +Y  + E++     
Sbjct: 70  EMAEMKHS----CRCKALIVTGCMAERYKDEIMTEIEEVDAVIGTTSYQHIAEVVAEVLE 125

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G++V       +D      +         G +++L I EGCDK CT+C++P  RG   S 
Sbjct: 126 GQKV----KQFDDLQAMPEVDVQRIMTTGGYSSYLKIAEGCDKHCTYCIIPKLRGSYRSH 181

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           S+  ++ +A  L   GV E+ ++ Q      G  L   +    +LL  L  I+GL  +R 
Sbjct: 182 SMDYLIKQAESLAAQGVKELNIVAQETT-VYGTDLYNGQKMLPELLKRLCRIEGLSWIRV 240

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
              +P ++++ LI+   +   +  YL LP+Q GSD +LK M RR T  E R II R+R  
Sbjct: 241 LYCYPEEINEELIQVIKEEPKICHYLDLPIQHGSDAVLKRMGRRTTQAELRSIIGRLREE 300

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            PDIA+ +  I GFPGET+ D +  +  V  + + +   F YS   GTP + M +Q+DE 
Sbjct: 301 IPDIALRTTLIAGFPGETEADHQEALQFVKDMRFDRLGVFTYSEEEGTPAAQMPDQIDEA 360

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQS-VVL 440
           VK  R   L    +      ++  VG+ ++VLIE    E+   +GR+    P +   V +
Sbjct: 361 VKETRRDALMMAQQAIAFDKSEEMVGKTVDVLIEGRLPEEDVYIGRTYRDAPDVDGYVFV 420

Query: 441 NSKNHNI-GDIIKVRITDVKISTLYGELV 468
           +++   I GDI+KV+ITD +   L G+++
Sbjct: 421 HAEEDMISGDIVKVKITDAQDYDLVGDVI 449


>gi|296117712|ref|ZP_06836296.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Corynebacterium
           ammoniagenes DSM 20306]
 gi|295969443|gb|EFG82684.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Corynebacterium
           ammoniagenes DSM 20306]
          Length = 488

 Score =  417 bits (1073), Expect = e-114,   Method: Composition-based stats.
 Identities = 154/446 (34%), Positives = 243/446 (54%), Gaps = 23/446 (5%)

Query: 36  MNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRI 95
           MNV+DS R+  +    GY       + DL+V NTC +RE A +++Y  LG ++ +K +  
Sbjct: 1   MNVHDSERISGLLEEAGYIAAEQEAEPDLVVFNTCAVRENADKRLYGSLGALKKVKENH- 59

Query: 96  KEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYS 155
                + + V GC+AQ + + ++  +P V+ V G      LP LLERAR  ++       
Sbjct: 60  ---PGMQIAVGGCLAQKDKDTVVSNAPWVDAVFGTHNMAALPTLLERARHNEKAQVEIVD 116

Query: 156 VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEAR 215
             + F  +        R+     +++I  GC+  CTFC+VP  RG E  R    ++ E +
Sbjct: 117 SLEAFPSVLPA----KRESSYAGWVSISVGCNNTCTFCIVPSLRGKEEDRRPGDILAEVQ 172

Query: 216 KLIDNGVCEITLLGQNVNAWRGKGLDGE----KCTFSDLLYSLSEIKGLVRLRYTTSHPR 271
            L+D GV E+TLLGQNVN++     D +    K  FS LL ++  I+GL RLR+T+ HP 
Sbjct: 173 ALVDQGVTEVTLLGQNVNSYGVNFADPDLPRDKFAFSKLLRAVGAIEGLERLRFTSPHPA 232

Query: 272 DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAI 331
           + +  +I A  +   + P LH+P+QSGSD++LK+M R +   ++ +I+D +R   P  AI
Sbjct: 233 EFTSDVIDAMAETPAVCPQLHMPLQSGSDKVLKNMRRSYRTKKFMRIVDEVREKMPHAAI 292

Query: 332 SSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERL 391
           ++D IVGFPGET++DF+ TMD+V +  ++ A++F+YSPR GTP + M EQV ++V  ER 
Sbjct: 293 TTDIIVGFPGETEEDFQGTMDIVRRARFSAAYTFQYSPRPGTPAATMDEQVPKHVVQERF 352

Query: 392 LCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG---KLVGRSPWLQSVVL-------- 440
             L K   E     N   +G  +E+L++  G++     +L GR+   + V          
Sbjct: 353 ERLIKLQDEIAAEENAKLIGTDVELLVQAEGRKNNEKHRLSGRARDGRLVHFAPVANGED 412

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGE 466
            S+    GDI+   ITD     L  +
Sbjct: 413 ISEQIRPGDIVHTTITDAGSFFLIAD 438


>gi|318040423|ref|ZP_07972379.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Synechococcus
           sp. CB0101]
          Length = 464

 Score =  417 bits (1073), Expect = e-114,   Method: Composition-based stats.
 Identities = 171/451 (37%), Positives = 257/451 (56%), Gaps = 23/451 (5%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           +++ ++GCQMN  DS RM  +  S GY    +  +ADL++ NTC IR+ A +KVYS+LGR
Sbjct: 21  YWITTFGCQMNKADSERMAGILESMGYSEAQAELEADLVLYNTCTIRDNAEQKVYSYLGR 80

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
               K    +   +L +VVAGCVAQ EGE +LRR P +++V+GPQ   RL  LL +   G
Sbjct: 81  QAQRK----RVNPNLTLVVAGCVAQQEGESLLRRVPELDLVMGPQHANRLDVLLAQVEQG 136

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           ++VV T+       E ++       R   +  ++ +  GC++ CT+CVVP  RG E SR 
Sbjct: 137 QQVVATEE--HHILEDITTAR----RDSSICGWVNVIYGCNERCTYCVVPSVRGKEQSRL 190

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG------EKCTFSDLLYSLSEIKGL 260
              +  E   L   G  EITLLGQN++A  G+ L G       + T +DLL  +  ++GL
Sbjct: 191 PEAIKLEMEGLAAQGFKEITLLGQNIDA-YGRDLPGITPEGRRQHTLTDLLQFVHNVEGL 249

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+ TSHPR  ++ LI A  DL  +  + H+P QSG D +LK+M R +T   YR+II+
Sbjct: 250 ERIRFATSHPRYFTERLIDACADLPKVCEHFHIPFQSGDDDVLKAMARGYTVDRYRRIIE 309

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           RIR   PD +IS+D IV FPGETD  +R T+DL+++IG+ Q  +  YSPR  TP ++  +
Sbjct: 310 RIRERMPDASISADVIVAFPGETDAQYRRTLDLIEEIGFDQVNTAAYSPRPNTPAADWPD 369

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVV 439
           Q+ E VK ERL  +   +       +    G+  +VL+E    K+  +++GR+   +   
Sbjct: 370 QLSEEVKVERLREINALVERVAKGRSARYAGRTEQVLVEGINPKDGDQVMGRTRTNRLTF 429

Query: 440 L-----NSKNHNIGDIIKVRITDVKISTLYG 465
                 +      GD++ VRI +V+  +L G
Sbjct: 430 FAAARTDGNRWEPGDLVDVRIDEVRAFSLSG 460


>gi|317500459|ref|ZP_07958683.1| MiaB family RNA modification enzyme [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|316898214|gb|EFV20261.1| MiaB family RNA modification enzyme [Lachnospiraceae bacterium
           8_1_57FAA]
          Length = 440

 Score =  417 bits (1073), Expect = e-114,   Method: Composition-based stats.
 Identities = 142/449 (31%), Positives = 224/449 (49%), Gaps = 16/449 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC  N+ D+  M  +  S+GYE  +    AD+IV+NTC     A E+    + 
Sbjct: 2   KILFISLGCDKNLVDTEVMLGLLASRGYEMTDDERQADIIVINTCCFIHDAKEESIQNIL 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +   K    K G   +++V GC+AQ   +EIL   P V+ V+G   Y ++ + ++RA  
Sbjct: 62  EMAEYK----KSGQVKVLIVTGCLAQRYRQEILDEIPEVDEVLGTTAYDKILDAVDRALE 117

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G++ +     + D                G  A+L I EGCDK CT+C++P  RG   S 
Sbjct: 118 GEQGI----ILSDLNALPVSGAKRLVTTGGHFAYLKIAEGCDKHCTYCIIPKIRGNFRSV 173

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            + +++ EA++L + GV E+ L+ Q      GK L GEKC    L+  L +I G+  +R 
Sbjct: 174 PMERLIKEAKELAEQGVKELILVAQETT-LYGKDLYGEKC-LHRLVEELCKIAGIRWIRI 231

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
              +P +++D LI+       +  YL LP+Q  SD ILK M RR +  E   I+ ++R  
Sbjct: 232 LYCYPEEITDELIEVIKKEPKVCHYLDLPIQHASDSILKRMGRRTSKQELTDIVKKLRKE 291

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            PDI + +  I GFPGET+D     M  VD++ + +   F YSP   TP + M +Q+ E 
Sbjct: 292 IPDICLRTTLITGFPGETEDQHEELMQFVDEMEFDRLGVFTYSPEEDTPAAVMPDQIAEE 351

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVLN 441
           VK ER   L +  +E      +  +G+ + V+IE    ++   VGR+    P +  ++  
Sbjct: 352 VKEERQADLMELQQEIAFDNAENMIGREMLVMIEGKVADENAYVGRTYRDAPNVDGLIFI 411

Query: 442 SKNHNI--GDIIKVRITDVKISTLYGELV 468
           +    +  GD  KV+IT      L GEL+
Sbjct: 412 NTEEELISGDFAKVKITGALEYDLIGELL 440


>gi|257066511|ref|YP_003152767.1| RNA modification enzyme, MiaB family [Anaerococcus prevotii DSM
           20548]
 gi|256798391|gb|ACV29046.1| RNA modification enzyme, MiaB family [Anaerococcus prevotii DSM
           20548]
          Length = 449

 Score =  417 bits (1072), Expect = e-114,   Method: Composition-based stats.
 Identities = 164/448 (36%), Positives = 255/448 (56%), Gaps = 17/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + + + ++GCQMN +DS R+  +    GY +      AD I+ NTC +RE A  K+Y  +
Sbjct: 14  KTYNITTFGCQMNEHDSERISYILEDLGYTKTEDRSSADFILFNTCLVRENAELKLYGQV 73

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAE--GEEILRRSPIVNVVVGPQTYYRLPELLER 142
             ++ LK    KE  + ++ V+GC+ Q     E I++    V+++ G +    L +L+ R
Sbjct: 74  SSLKKLK----KEHPEKIIAVSGCMMQTSTAREVIIKDHKEVDIIFGTKNINSLVDLIFR 129

Query: 143 A-RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
                +RV+D   S +D  +        YN      AF+ I  GCD FC++C+VP +RG 
Sbjct: 130 YLETNERVIDI--STDDVKDDYV----NYNTLNDFQAFVNIMTGCDNFCSYCIVPESRGR 183

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR  S ++ E   L++ G  EITLLGQNVN+  G   D +  TF +LL  +S+I+GL 
Sbjct: 184 EESRRPSAILAEVEHLVEEGYKEITLLGQNVNS-YGNKADFD-MTFPELLEKISQIEGLK 241

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           RLR+TTSHP+D+SD LI+   + D +  Y HLP+QSGS ++LK MNR++   +Y +   +
Sbjct: 242 RLRFTTSHPKDLSDELIEVIKNNDNICNYFHLPLQSGSSKVLKDMNRKYDQEKYIERAKK 301

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R   P IAIS+D IVG+P ET++DF+ T+ +  +I +  AF+FKYSPR  T  + +   
Sbjct: 302 LREEIPGIAISTDIIVGYPTETEEDFKETLKVCREIEFDSAFTFKYSPRPKTRAAKLTP- 360

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVL 440
           +D+ +  +R   L   +       N   +G+ +EVL+E   K     L GR+   + V +
Sbjct: 361 IDDEIVQDRFDRLLDTIYPIFNEKNKEYIGKTVEVLLESESKNNPDILTGRTDTFKLVHV 420

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
            +    IG+I+KV+ITD    T+ GELV
Sbjct: 421 KASKKLIGEIVKVKITDNTSFTISGELV 448


>gi|95930428|ref|ZP_01313164.1| tRNA-i(6)A37 modification enzyme MiaB [Desulfuromonas acetoxidans
           DSM 684]
 gi|95133468|gb|EAT15131.1| tRNA-i(6)A37 modification enzyme MiaB [Desulfuromonas acetoxidans
           DSM 684]
          Length = 444

 Score =  417 bits (1072), Expect = e-114,   Method: Composition-based stats.
 Identities = 166/449 (36%), Positives = 262/449 (58%), Gaps = 15/449 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + + F+++++GCQMNV DS  + ++     Y  V +   ADLI+LNTC +R+KA  KVY 
Sbjct: 1   MSKSFYLETFGCQMNVVDSEWIVNLLGQIDYHPVETPQQADLILLNTCSVRDKAERKVYG 60

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            L   + LK+ R     DL++ V GCVAQ EG+++L++ P +++V G    ++LPEL+  
Sbjct: 61  HLSHFKPLKDQR----PDLILAVGGCVAQQEGQQLLKKVPYLDIVFGTHNVHKLPELIFA 116

Query: 143 ARFGK-RVVDTDYSVEDKFERLSIVDGGYNR--KRGVTAFLTIQEGCDKFCTFCVVPYTR 199
              G+ R  +T +     +E    +D    R  +  +  F+T+ +GCD FC++CVVPY R
Sbjct: 117 VEQGRGRQCETTH-----YEGAKRLDQFPQRADENAICRFVTVMQGCDNFCSYCVVPYVR 171

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G E+SR+   ++DE R L+D GV E+TLLGQNVN+  G+   G+  +F +LL  + +I G
Sbjct: 172 GREVSRASGDILDEVRSLVDQGVREVTLLGQNVNS-YGQKGSGD-MSFPELLQRVHDIDG 229

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           L RLR+T+SHP+D+SD LI     LD L  ++HL +QSGS+R+L+ MNR ++  +Y + +
Sbjct: 230 LQRLRFTSSHPKDLSDDLIACFTSLDKLCKHMHLALQSGSNRVLELMNRGYSREQYLERV 289

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            R++   P+I +++D IVGFPGE   DF  T+D+++++ +A AFSF YS R  T    M 
Sbjct: 290 TRLKQACPEIRMTTDLIVGFPGEQQADFEQTLDMLEQVRFADAFSFLYSRRPQTKALEME 349

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSV 438
           + V  + K      + K              G +  VL+E   +   G++ GR+ W + V
Sbjct: 350 DPVPADEKQRWFERMLKLQETISAEIWQQDCGTVQPVLVEGVSRHGQGQVFGRNQWNRIV 409

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGEL 467
             +     IG  + VRI D   ++  G L
Sbjct: 410 NFDGPESLIGQQVAVRIEDSLRNSHRGVL 438


>gi|13385358|ref|NP_080152.1| CDK5 regulatory subunit-associated protein 1 [Mus musculus]
 gi|32129439|sp|Q8BTW8|CK5P1_MOUSE RecName: Full=CDK5 regulatory subunit-associated protein 1;
           AltName: Full=CDK5 activator-binding protein C42
 gi|12845305|dbj|BAB26700.1| unnamed protein product [Mus musculus]
 gi|19264024|gb|AAH25132.1| CDK5 regulatory subunit associated protein 1 [Mus musculus]
 gi|123228756|emb|CAM15624.1| CDK5 regulatory subunit associated protein 1 [Mus musculus]
 gi|148674120|gb|EDL06067.1| CDK5 regulatory subunit associated protein 1 [Mus musculus]
          Length = 588

 Score =  417 bits (1072), Expect = e-114,   Method: Composition-based stats.
 Identities = 155/479 (32%), Positives = 248/479 (51%), Gaps = 38/479 (7%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ ++++YGCQMNV D+     +    GY R +++ +AD+I+L TC IREKA + +++ L
Sbjct: 99  RKVYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCSIREKAEQTIWNRL 158

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            +++ LK  R +    L + + GC+A+    EIL R  +V+++ GP  Y  LP LL    
Sbjct: 159 HQLKVLKTKRPRSRVPLRIGILGCMAERLKGEILNREKMVDLLAGPDAYRDLPRLLAVVE 218

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G++  +   S+++ +  +  V          +AF++I  GCD  C++C+VP+TRG E S
Sbjct: 219 SGQQAANVLLSLDETYADIMPVQTS---PSATSAFVSIMRGCDNMCSYCIVPFTRGRERS 275

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAW-----------------RGKGLDGEKC-- 245
           R ++ ++DE RKL + G+ E+TLLGQNVN++                 RG   + +    
Sbjct: 276 RPVASILDEVRKLSEQGLKEVTLLGQNVNSFRDNSEVQFNNAGSANLSRGFTTNYKPKQG 335

Query: 246 --TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
              FS LL  +S I   +R+R+T+ HP+D  D +++   +   +   +HLP QSGS R+L
Sbjct: 336 GLRFSHLLDQVSRIDPEMRIRFTSPHPKDFPDEVLQLIRERHNICKQIHLPAQSGSSRVL 395

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
            +M R ++   Y  ++  +R   P +++SSDFI GF GET+DD R T+ L+ ++ Y   F
Sbjct: 396 DAMRRGYSREAYVALVHHVRETIPGVSLSSDFITGFCGETEDDHRQTVSLLREVQYNTGF 455

Query: 364 SFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422
            F YS R  T     + + V E VK  RL  L    RE+    N   VG    VL+E   
Sbjct: 456 LFAYSMRQKTRAYHRLKDDVPEEVKLRRLEELITVFREEASKANKTSVGCSQLVLVEGFS 515

Query: 423 KEKGK-LVGRSPWLQSVVLNSKN------------HNIGDIIKVRITDVKISTLYGELV 468
           K     L GR+     V+                    GD + V+IT     TL G ++
Sbjct: 516 KRSTTDLCGRNDANLKVIFPDAEVEDITNPGLKVRAQPGDYVLVKITSASSQTLKGHIL 574


>gi|310641636|ref|YP_003946394.1| tRNA-i(6)a37 thiotransferase enzyme miab [Paenibacillus polymyxa
           SC2]
 gi|309246586|gb|ADO56153.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Paenibacillus polymyxa
           SC2]
          Length = 517

 Score =  417 bits (1072), Expect = e-114,   Method: Composition-based stats.
 Identities = 173/447 (38%), Positives = 265/447 (59%), Gaps = 14/447 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + + V ++GCQMN +DS  ++ +    GY+      +AD+I+LNTC IRE A +KV+  L
Sbjct: 74  KHYIVYTFGCQMNEHDSETIKGLLEQMGYQATEDRKEADIILLNTCAIRENAEDKVFGEL 133

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G +++LK         LL+ V GC++Q E     I+++   V+++ G    +RLP+L++ 
Sbjct: 134 GHLKHLKTE----KPGLLLGVCGCMSQEENVVNRIMQKHGFVDMIFGTHNIHRLPQLVKE 189

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           A F K +V   +S E       I++    ++ G+ A++ I  GCDKFCT+C+VP+TRG E
Sbjct: 190 ALFSKEMVVEVWSKEG-----DIIENLPKKREGMRAWVNIMYGCDKFCTYCIVPFTRGKE 244

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR    V+ E R L   G  EITLLGQNVNA  GK L      F DL+  + +I  + R
Sbjct: 245 RSRRPEDVIAEVRDLARQGFKEITLLGQNVNA-YGKDLKDMNYRFGDLMDDMRKIN-IPR 302

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHPRD  D L++  G    L+ ++HLPVQSG+  ILK MNR++T     ++  +I
Sbjct: 303 VRFTTSHPRDFDDHLVEVLGKGGNLVEHIHLPVQSGNTDILKKMNRKYTRERVLELAAKI 362

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           ++  P +++++D IVGFPGETD+ F  T+ LV ++GY  A++F YSPR GTP ++M + V
Sbjct: 363 KAAVPHVSLTTDIIVGFPGETDEQFEDTLSLVREVGYDFAYTFIYSPREGTPAASMEDNV 422

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVLN 441
             +VK ERL  L   + +  + FN    G+++EVL+E   K   K L GR+   + V   
Sbjct: 423 PMSVKKERLRRLNIAVNQNSLRFNSRLRGEVVEVLVEGESKNDSKVLAGRTRSNKLVHFE 482

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                IG  ++V+IT+     + G+LV
Sbjct: 483 GSKDLIGSFVQVKITEPMTFYIKGDLV 509


>gi|153853169|ref|ZP_01994578.1| hypothetical protein DORLON_00563 [Dorea longicatena DSM 13814]
 gi|149753955|gb|EDM63886.1| hypothetical protein DORLON_00563 [Dorea longicatena DSM 13814]
          Length = 481

 Score =  417 bits (1072), Expect = e-114,   Method: Composition-based stats.
 Identities = 164/457 (35%), Positives = 252/457 (55%), Gaps = 14/457 (3%)

Query: 14  VSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIR 73
           V +  ++   P  F V ++GCQMN  DS ++  +    GY      D+AD I+ NTC +R
Sbjct: 34  VQRESEELGRPLTFCVTTFGCQMNARDSEKLCGILEKIGYVEAA-EDEADFIIFNTCTVR 92

Query: 74  EKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQ 131
           E A  +VY  LG+++  K    K+   +++ + GC+ Q     E++      V+++ G  
Sbjct: 93  ENANMRVYGRLGQLKPRK----KKNPHMMIGLCGCMMQEPEVVEKLKTSYRYVDIIFGTH 148

Query: 132 TYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCT 191
             ++  EL+      +R+V   +   DK       D    RK    + + I  GC+ FC+
Sbjct: 149 NIFKFAELIVTRFESQRMVIDIWKDTDKIVENLPND----RKFSFKSGVNIMFGCNNFCS 204

Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLL 251
           +C+VPY RG E SR    ++ E R+L+ +GV E+ LLGQNVN+  GK L+    TF+ LL
Sbjct: 205 YCIVPYVRGRERSRDPEAIISEIRQLVADGVVEVMLLGQNVNS-YGKNLE-HPITFAQLL 262

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
             + +I+GL R+R+ TSHP+D+SD LI+  G    +  +LHLPVQSGS +ILK MNR +T
Sbjct: 263 ERIEQIEGLERIRFMTSHPKDLSDELIEVMGKSKKICKHLHLPVQSGSSKILKKMNRHYT 322

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
             +Y +++++IR   PD+++++D IVGFPGET++DF  TMD+V K+ Y  AF+F YS R 
Sbjct: 323 KEQYLELVEKIRRSVPDVSLTTDIIVGFPGETEEDFEETMDIVRKVRYDSAFTFIYSKRT 382

Query: 372 GTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVG 430
           GTP + M +QV E+V   R   L K++            G +   LIE   + +   + G
Sbjct: 383 GTPAAVMEDQVPEDVVKNRFDRLLKEVHSIASEVCSVHEGTVQTALIESVSEHDPSMVTG 442

Query: 431 RSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
           R      V +      IG +  VR+T+ K     GEL
Sbjct: 443 RLSNNLLVHIKGDKGMIGRLADVRLTECKGFYYLGEL 479


>gi|269978120|ref|ZP_06185070.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Mobiluncus mulieris 28-1]
 gi|269933629|gb|EEZ90213.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Mobiluncus mulieris 28-1]
          Length = 547

 Score =  417 bits (1072), Expect = e-114,   Method: Composition-based stats.
 Identities = 161/508 (31%), Positives = 251/508 (49%), Gaps = 57/508 (11%)

Query: 5   IKLIGVAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDD--- 61
           +K   VA+      ++ + P+ + V + GCQMN +DS RM  +  + G   V+S+ +   
Sbjct: 1   MKTAAVANRPLSPAERGL-PRTYHVVTLGCQMNEHDSERMAGLLDAAGMVPVSSVPEKAA 59

Query: 62  ---------ADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQA 112
                    AD++VLNTC +RE AA K+Y  LG++  +K    +E   +++ V GC AQ 
Sbjct: 60  RATRAGDGGADVVVLNTCSVRENAANKLYGHLGQLAEVK----RERPGMMIAVGGCFAQQ 115

Query: 113 EGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNR 172
           EG  ILRR+P V+ + G      LP LL RA   +            F  +       +R
Sbjct: 116 EGSGILRRAPWVDAIFGTHNIDMLPVLLRRAELRQEAAVELEETLKVFPSMLPA----HR 171

Query: 173 KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNV 232
               +A+++I  GC+  CTFC+VP  RG E  R   +++ E + ++  G  E+TLLGQNV
Sbjct: 172 TSPASAWVSISVGCNNTCTFCIVPSLRGRERDREPEEILRELQAVVAQGAVEVTLLGQNV 231

Query: 233 NAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLH 292
           N+  G G  G +  F+ LL       GL RLR+ + HP   ++ +I A  +   +MP LH
Sbjct: 232 NS-YGNGF-GRRGAFAQLLREAGRTPGLERLRFASPHPAAFTEDVIAAMAETPTVMPSLH 289

Query: 293 LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352
            P+QSGSDR+L+ M R +    + +I+  +R   P+ AI++D IVGFPGETD DF AT+ 
Sbjct: 290 FPLQSGSDRVLRQMRRSYRVERFLRILGEVRDAIPEAAITTDVIVGFPGETDADFEATLR 349

Query: 353 LVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQ 412
           ++++  ++ AF+F YS R GTP ++  +QV   V +ER   L           N+   GQ
Sbjct: 350 VMEQARFSAAFTFIYSRRPGTPAADREDQVPSEVVSERYQRLLALQERISTEENERLEGQ 409

Query: 413 IIEVLIEKHG---KEKGKLVGRSPWLQSVVL----------------------------- 440
            +EVL+ + G   +E G++ GR+   + V                               
Sbjct: 410 TVEVLVGEQGTKDRETGRMSGRARDNRLVHFALPPSLSQSDLQKGNGSAITHSGAKLTHP 469

Query: 441 --NSKNHNIGDIIKVRITDVKISTLYGE 466
                    GD + V++T      L  +
Sbjct: 470 GGEPPMPRPGDFVTVQVTHGAPHHLVAD 497


>gi|227875229|ref|ZP_03993371.1| possible tRNA 2-methylthioadenine synthetase [Mobiluncus mulieris
           ATCC 35243]
 gi|227844134|gb|EEJ54301.1| possible tRNA 2-methylthioadenine synthetase [Mobiluncus mulieris
           ATCC 35243]
          Length = 552

 Score =  417 bits (1072), Expect = e-114,   Method: Composition-based stats.
 Identities = 161/508 (31%), Positives = 251/508 (49%), Gaps = 57/508 (11%)

Query: 5   IKLIGVAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDD--- 61
           +K   VA+      ++ + P+ + V + GCQMN +DS RM  +  + G   V+S+ +   
Sbjct: 6   MKTAAVANRPLSPAERGL-PRTYHVVTLGCQMNEHDSERMAGLLDAAGMVPVSSVPEKAA 64

Query: 62  ---------ADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQA 112
                    AD++VLNTC +RE AA K+Y  LG++  +K    +E   +++ V GC AQ 
Sbjct: 65  RATRAGDGGADVVVLNTCSVRENAANKLYGHLGQLAEVK----RERPGMMIAVGGCFAQQ 120

Query: 113 EGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNR 172
           EG  ILRR+P V+ + G      LP LL RA   +            F  +       +R
Sbjct: 121 EGSGILRRAPWVDAIFGTHNIDMLPVLLRRAELRQEAAVELEETLKVFPSMLPA----HR 176

Query: 173 KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNV 232
               +A+++I  GC+  CTFC+VP  RG E  R   +++ E + ++  G  E+TLLGQNV
Sbjct: 177 TSPASAWVSISVGCNNTCTFCIVPSLRGRERDREPEEILRELQAVVAQGAVEVTLLGQNV 236

Query: 233 NAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLH 292
           N+  G G  G +  F+ LL       GL RLR+ + HP   ++ +I A  +   +MP LH
Sbjct: 237 NS-YGNGF-GRRGAFAQLLREAGRTPGLERLRFASPHPAAFTEDVIAAMAETPTVMPSLH 294

Query: 293 LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352
            P+QSGSDR+L+ M R +    + +I+  +R   P+ AI++D IVGFPGETD DF AT+ 
Sbjct: 295 FPLQSGSDRVLRQMRRSYRVERFLRILGEVRDAIPEAAITTDVIVGFPGETDADFEATLR 354

Query: 353 LVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQ 412
           ++++  ++ AF+F YS R GTP ++  +QV   V +ER   L           N+   GQ
Sbjct: 355 VMEQARFSAAFTFIYSRRPGTPAADREDQVPSEVVSERYQRLLALQERISTEENERLEGQ 414

Query: 413 IIEVLIEKHG---KEKGKLVGRSPWLQSVVL----------------------------- 440
            +EVL+ + G   +E G++ GR+   + V                               
Sbjct: 415 TVEVLVGEQGTKDRETGRMSGRARDNRLVHFALPPSLSQSDLQKGNGSAITHSGGKLMHP 474

Query: 441 --NSKNHNIGDIIKVRITDVKISTLYGE 466
                    GD + V++T      L  +
Sbjct: 475 GGEPPMPRPGDFVTVQVTHGAPHHLVAD 502


>gi|56421035|ref|YP_148353.1| hypothetical protein GK2500 [Geobacillus kaustophilus HTA426]
 gi|261418482|ref|YP_003252164.1| RNA modification enzyme, MiaB family [Geobacillus sp. Y412MC61]
 gi|319767557|ref|YP_004133058.1| RNA modification enzyme, MiaB family [Geobacillus sp. Y412MC52]
 gi|56380877|dbj|BAD76785.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
 gi|261374939|gb|ACX77682.1| RNA modification enzyme, MiaB family [Geobacillus sp. Y412MC61]
 gi|317112423|gb|ADU94915.1| RNA modification enzyme, MiaB family [Geobacillus sp. Y412MC52]
          Length = 449

 Score =  417 bits (1072), Expect = e-114,   Method: Composition-based stats.
 Identities = 137/450 (30%), Positives = 237/450 (52%), Gaps = 20/450 (4%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           +P      + GC++N Y++  +  +F   GYER      AD+ V+NTC +     +K   
Sbjct: 1   MP-TVAFHTLGCKVNHYETEAIWQLFKKAGYERKEFESRADVYVINTCTVTNTGDKKSRQ 59

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            + R        ++   D +V V GC AQ    E++   P V++V+G Q  +++ + +E+
Sbjct: 60  VIRRA-------VRRNPDAVVCVTGCYAQTSPAEVMA-IPGVDIVIGTQDRHKILDYIEQ 111

Query: 143 ARFGKRVVDTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
            +  ++ ++  +++     FE + + +          A L IQEGC+ FCTFC++P+ RG
Sbjct: 112 FQRERQPINAVHNIMKTRVFEEMDVPE----FTDRTRASLKIQEGCNNFCTFCIIPWARG 167

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE-IKG 259
           +  SR   +++ +AR+L+  G  EI L G +     G G D +   F+ LL  L E + G
Sbjct: 168 LMRSRDPQEIIRQARQLVAAGYKEIVLTGIHTG---GYGTDLKDYNFASLLRDLDEQVPG 224

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           L RLR ++     ++D +I      + ++ +LH+P+QSGS+ +LK M R++T   Y + +
Sbjct: 225 LKRLRISSIEASQITDEVIDVLKRSEKIVRHLHIPLQSGSNTVLKRMRRKYTVEFYAERL 284

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            R+R V P++A++SD IVGFPGET+D+F  T + + +  +++   F YS R GTP + M 
Sbjct: 285 ARLREVFPELAVTSDVIVGFPGETEDEFMETYNFIREQRFSELHVFPYSKRTGTPAARMP 344

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRSPWLQSV 438
            Q+DE  K +R+  L     +    +     GQ++EV+ E+  KE     VG +     V
Sbjct: 345 NQIDEETKHDRVRRLIALSDQLAKEYASRFEGQVLEVIPEERDKERPDLYVGYTDNYLKV 404

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468
              +    +G+++KV+IT        GE V
Sbjct: 405 RFPATEEMVGELVKVKITKAGYPYNEGEFV 434


>gi|315226650|ref|ZP_07868438.1| tRNA-I(6)A37 thiotransferase [Parascardovia denticolens DSM 10105]
 gi|315120782|gb|EFT83914.1| tRNA-I(6)A37 thiotransferase [Parascardovia denticolens DSM 10105]
          Length = 501

 Score =  417 bits (1072), Expect = e-114,   Method: Composition-based stats.
 Identities = 162/449 (36%), Positives = 251/449 (55%), Gaps = 22/449 (4%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVN----SMDDADLIVLNTCHIREKAAEKVYS 82
           ++V + GCQMNV+DS R+  +  S GY + N       D DLIV+NTC +RE A+ ++Y 
Sbjct: 50  YYVHTLGCQMNVHDSERIAGVLESDGYVKANQVQIDSHDLDLIVMNTCAVRENASNRMYG 109

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            LG+   LK    +E   L + V GC+AQ + + I  R+P V+ V G +    L  LL++
Sbjct: 110 TLGQWAELK----RENPRLQIAVGGCMAQKDRQRITERAPWVDAVFGTKNIGSLTGLLDK 165

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           AR  +R      +  D F     V    +R   V+A++ I  GC+  CTFC+VP  RG E
Sbjct: 166 ARAERRSQVQVATDLDYFPSQLPV----SRASRVSAWVAISMGCNNTCTFCIVPSVRGRE 221

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
             R    V+DE ++ +D G  E+TLLGQNVN++      G++  FS LL +  +I GL R
Sbjct: 222 RDRRPGDVLDEIQRCVDAGSKEVTLLGQNVNSYGYSM--GDRYAFSKLLRACGKIDGLER 279

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+T+ HP   +D +I+A  +   +M  LH+P+QSGSDRIL++M R +   ++  I+ ++
Sbjct: 280 VRFTSPHPAAFTDDVIEAMAETPNVMHQLHMPLQSGSDRILRAMRRSYRTAKFMDILGKV 339

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+  PD  IS+D IVGFPGET++DF+ T+DL+ +  +A A++F+YSPR GTP + +L Q+
Sbjct: 340 RAAMPDAQISTDVIVGFPGETEEDFQRTLDLISQARFASAYTFEYSPRPGTPAA-LLPQI 398

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG---KLVGRSPWLQSVV 439
             +V  +R   L     E       A  G+ +EV++   G++ G   ++ GR      V 
Sbjct: 399 PADVMRDRYTRLHDLQEEITEEGLKAFRGKEVEVMVTGQGRKDGNTHRITGREKTGTLVH 458

Query: 440 LNSKN----HNIGDIIKVRITDVKISTLY 464
           +          +GD +   +TD     L 
Sbjct: 459 IGPPEGYPAARVGDFVTCTVTDSARHYLI 487


>gi|306818491|ref|ZP_07452214.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Mobiluncus mulieris ATCC
           35239]
 gi|304648664|gb|EFM45966.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Mobiluncus mulieris ATCC
           35239]
          Length = 552

 Score =  417 bits (1071), Expect = e-114,   Method: Composition-based stats.
 Identities = 161/508 (31%), Positives = 251/508 (49%), Gaps = 57/508 (11%)

Query: 5   IKLIGVAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDD--- 61
           +K   VA+      ++ + P+ + V + GCQMN +DS RM  +  + G   V+S+ +   
Sbjct: 6   MKTAAVANRPLSPAERGL-PRTYHVVTLGCQMNEHDSERMAGLLDAAGMVPVSSVPEKAA 64

Query: 62  ---------ADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQA 112
                    AD++VLNTC +RE AA K+Y  LG++  +K    +E   +++ V GC AQ 
Sbjct: 65  RATRAGDGGADVVVLNTCSVRENAANKLYGHLGQLAEVK----RERPGMMIAVGGCFAQQ 120

Query: 113 EGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNR 172
           EG  ILRR+P V+ + G      LP LL RA   +            F  +       +R
Sbjct: 121 EGSGILRRAPWVDAIFGTHNIDMLPVLLRRAELRQEAAVELEETLKVFPSMLPA----HR 176

Query: 173 KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNV 232
               +A+++I  GC+  CTFC+VP  RG E  R   +++ E + ++  G  E+TLLGQNV
Sbjct: 177 TSPASAWVSISVGCNNTCTFCIVPSLRGRERDREPEEILRELQAVVAQGAVEVTLLGQNV 236

Query: 233 NAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLH 292
           N+  G G  G +  F+ LL       GL RLR+ + HP   ++ +I A  +   +MP LH
Sbjct: 237 NS-YGNGF-GRRGAFAQLLREAGRTPGLERLRFASPHPAAFTEDVIAAMAETPTVMPSLH 294

Query: 293 LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352
            P+QSGSDR+L+ M R +    + +I+  +R   P+ AI++D IVGFPGETD DF AT+ 
Sbjct: 295 FPLQSGSDRVLRQMRRSYRVERFLRILGEVRDAIPEAAITTDVIVGFPGETDADFEATLR 354

Query: 353 LVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQ 412
           ++++  ++ AF+F YS R GTP ++  +QV   V +ER   L           N+   GQ
Sbjct: 355 VMEQARFSAAFTFIYSRRPGTPAADREDQVPSEVVSERYQRLLALQERISTEENERLEGQ 414

Query: 413 IIEVLIEKHG---KEKGKLVGRSPWLQSVVL----------------------------N 441
            +EVL+ + G   +E G++ GR+   + V                               
Sbjct: 415 TVEVLVGEQGTKDRETGRMSGRARDNRLVHFALPPSLSQSDLQKGNGSAITHSGGKLMHP 474

Query: 442 SKN---HNIGDIIKVRITDVKISTLYGE 466
                    GD + V++T      L  +
Sbjct: 475 GDEPPMPRPGDFVTVQVTHGAPHHLVAD 502


>gi|302525513|ref|ZP_07277855.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Streptomyces sp. AA4]
 gi|302434408|gb|EFL06224.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Streptomyces sp. AA4]
          Length = 493

 Score =  417 bits (1071), Expect = e-114,   Method: Composition-based stats.
 Identities = 155/457 (33%), Positives = 245/457 (53%), Gaps = 22/457 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + + ++++GCQMNV+DS R+       GY         DL+V NTC +RE A  K+Y  L
Sbjct: 4   KTYQIRTFGCQMNVHDSERLAGQLEEAGYVPAAGQAKPDLVVFNTCAVRENADNKLYGTL 63

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           G +R  K +      D+ + V GC+AQ +  +I++R+P V+VV G      LP LLERAR
Sbjct: 64  GHLRPDKVA----NPDMQIAVGGCLAQKDRGDIVKRAPWVDVVFGTHNIGSLPTLLERAR 119

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
                        + F           R+    +++++  GC+  CTFC+VP  RG E  
Sbjct: 120 HNAEAEVEILESLETFPSTLPAR----RESSYASWVSVSVGCNNTCTFCIVPSLRGKERD 175

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R   +++ E   L+  GV E+TLLGQNVN++  +   G++  F  LL +   I GL R+R
Sbjct: 176 RRPGEILAEVEALVAEGVLEVTLLGQNVNSYGVEF--GDRLAFGKLLRATGGIDGLERVR 233

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +T+ HP   +  +I A  +   +   LH+P+QSGSDR+L+ M R + +  +  I+D +R+
Sbjct: 234 FTSPHPAAFTSDVIDAMAETPNVCHQLHMPLQSGSDRVLREMRRSYRSARFLNILDEVRA 293

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             PD AI++D IVGFPGET++DF+AT+D+V    ++ AF+F+YS R GTP + M EQ+ +
Sbjct: 294 AMPDAAITTDIIVGFPGETEEDFQATLDVVRAARFSSAFTFQYSKRPGTPAAEMAEQLPK 353

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI---EK-HGKEKGKLVGRSPWLQSVVL 440
            V  ER   L +   E     N   VG+ +E+L+   E     E  ++ GR+   + V  
Sbjct: 354 EVVQERYDRLVELQNEISWEENRKLVGRRVELLVAAGEGRKDAETHRMSGRARDGRLVHF 413

Query: 441 N------SKNHNIGDIIKVRITDVKISTLY--GELVV 469
                   ++   GD+++  I+      L   G+L+ 
Sbjct: 414 TPTGSAVDRSVRPGDVVETVISYGAPHHLVADGDLLT 450


>gi|149378505|ref|ZP_01896181.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Marinobacter algicola
           DG893]
 gi|149357211|gb|EDM45757.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Marinobacter algicola
           DG893]
          Length = 417

 Score =  417 bits (1071), Expect = e-114,   Method: Composition-based stats.
 Identities = 185/420 (44%), Positives = 264/420 (62%), Gaps = 14/420 (3%)

Query: 54  ERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAE 113
           E  ++ DDAD+++LNTC IREKA EKV+  LGR + LKNS      DL++ V GCVA  E
Sbjct: 2   EMTDTPDDADILLLNTCSIREKAQEKVFHQLGRWKKLKNS----KPDLIIGVGGCVASQE 57

Query: 114 GEEILRRSPIVNVVVGPQTYYRLPELLERAR---FGKRVVDTDYSVEDKFERLSIVDGGY 170
           G+ I+ R+P V++V GPQT +RLP+++   R    G  VVD  +   +KF+ L       
Sbjct: 58  GQAIIDRAPYVDMVFGPQTLHRLPDMITEVRAKGNGVGVVDVSFPEIEKFDNLP-----D 112

Query: 171 NRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQ 230
               G +AF++I EGC K+CTFCVVPYTRG E+SR +  V+ E   L   GV E+ LLGQ
Sbjct: 113 PGADGPSAFVSIMEGCSKYCTFCVVPYTRGEEVSRPVDDVIAEVAHLASQGVREVNLLGQ 172

Query: 231 NVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY 290
           NVNA+RG+  DG+    ++L+  ++ I G+ R+RYTTSHP + SD LI+A+  +  L+ +
Sbjct: 173 NVNAYRGETHDGDVMDMAELVTLIATIDGIDRIRYTTSHPVEFSDSLIEAYEQVPELVSH 232

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
           LHLPVQSGSDR+L +M R HTA EY+  + R+R +RPDI+ SSDFI+GFPGET+ DF+ T
Sbjct: 233 LHLPVQSGSDRVLAAMKRGHTALEYKSKLRRLRKIRPDISFSSDFIIGFPGETEKDFQDT 292

Query: 351 MDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACV 410
           M L++ IG+  +FSF YS R GTP +++ +     VK +RL  LQ +L +  +  +   V
Sbjct: 293 MKLINDIGFDMSFSFIYSARPGTPAADLPDDTPLEVKKQRLSILQDRLNQNVMDISRKMV 352

Query: 411 GQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLNSKNHN-IGDIIKVRITDVKISTLYGELV 468
           G    +L+     K+ G+  GR+   + V    +N   +G  I V I +   ++L G  V
Sbjct: 353 GSTQRILVTGLSKKDPGEYAGRTENNRIVNFRHENPEVVGHFIDVEIREALPNSLRGVPV 412


>gi|238066631|sp|Q2JK17|RIMO_SYNJB RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
          Length = 473

 Score =  417 bits (1071), Expect = e-114,   Method: Composition-based stats.
 Identities = 130/447 (29%), Positives = 226/447 (50%), Gaps = 19/447 (4%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
             V   GC+ N  D+  M  +    GY      + A+ +++NTC   E A  +  S L  
Sbjct: 32  VAVLHLGCEKNRVDTEHMLGLLAQAGYRVDGDEESANYVIVNTCSFIEAARRESVSTLME 91

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           +               +++AGC+AQ   EE+L+  P    +VG   Y+++ +++ER   G
Sbjct: 92  LAVQGKK---------IIIAGCLAQHFQEELLQEIPEAVAIVGTGDYHQIVQIIERVERG 142

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           +RV     S++   +        Y       A+L + EGC+  C+FC++P+ RG + SRS
Sbjct: 143 ERVNAVTSSLDYIADETVP---RYRTTHAPVAYLRVAEGCNYRCSFCIIPHLRGDQRSRS 199

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
           +  ++ EA +L + GV E+ L+ Q +    G  L GE    +DL+ +L +I  +  +R  
Sbjct: 200 IESILREAEQLAEEGVQELILISQ-ITTHYGIDLYGEP-RLADLIRALGKIP-IPWIRML 256

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
            ++P  ++  +++A  +    +PYL LP+Q    +ILK+MNR        ++I+R+R   
Sbjct: 257 YAYPTGVTPAVVEAIQETPNFLPYLDLPLQHSHPQILKAMNRPWQGQVNDRVIERLRQAL 316

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           P+  + + FIVGFPGET++ F+  +D V +  +     F +SP  GTP  ++  QV E V
Sbjct: 317 PNAVLRTSFIVGFPGETEEHFQHLLDFVQRHQFDHVGVFTFSPEEGTPAYHLPHQVPEAV 376

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVLNS 442
           K ER   L +  +      N   VG+++ VL+E+     G+ +GRS    P +  VV   
Sbjct: 377 KQERRARLMQVQQGITFRRNREQVGRVVPVLLEQENPRTGEWIGRSPRFAPEVDGVVYVQ 436

Query: 443 KNHNIGDIIKVRITDVKISTLYGELVV 469
              ++G ++ V+IT  +   L+G++V 
Sbjct: 437 GQGSLGSLVPVQITRAEPYDLFGQVVA 463


>gi|300784287|ref|YP_003764578.1| methylase of isopentenylated A37 derivatives in tRNA [Amycolatopsis
           mediterranei U32]
 gi|299793801|gb|ADJ44176.1| methylase of isopentenylated A37 derivatives in tRNA [Amycolatopsis
           mediterranei U32]
          Length = 497

 Score =  417 bits (1071), Expect = e-114,   Method: Composition-based stats.
 Identities = 154/459 (33%), Positives = 243/459 (52%), Gaps = 20/459 (4%)

Query: 18  VDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA 77
           + +   P+ + ++++GCQMNV+DS R+       GY    +    DLIV NTC +RE A 
Sbjct: 1   MTENQAPRAYQIRTFGCQMNVHDSERLAGQLEDAGYVPATAGAKPDLIVFNTCAVRENAD 60

Query: 78  EKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLP 137
            K+Y  LG +R  K +      DL + V GC+AQ +  EI++R+P V+VV G      LP
Sbjct: 61  NKLYGTLGHLRPDKVA----NPDLQIAVGGCLAQKDRGEIVKRAPWVDVVFGTHNIGALP 116

Query: 138 ELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197
            LLERAR             + F           R+    +++++  GC+  CTFC+VP 
Sbjct: 117 TLLERARHNAEAEVEILESLETFPSTLPAR----RESSYASWVSVSVGCNNTCTFCIVPA 172

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257
            RG E  R   +++ E   L+  GV E+TLLGQNVN++  +   G++  F  LL +   +
Sbjct: 173 LRGKERDRRPGEILAEVEALVAEGVLEVTLLGQNVNSYGVEF--GDRLAFGKLLRACGTV 230

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
            GL R+R+T+ HP   +  +I A      +   LH+P+QSGSDR+L+ M R + +  +  
Sbjct: 231 DGLERVRFTSPHPAAFTSDVIDAMAATPNVCHQLHMPLQSGSDRVLREMKRSYRSARFLN 290

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
           I+D +R+  PD AI++D IVGFPGET++DF+AT+D+V +  ++ AF+F+YS R GTP + 
Sbjct: 291 ILDEVRAAMPDAAITTDIIVGFPGETEEDFQATLDVVAQARFSSAFTFQYSKRPGTPAAT 350

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI---EK-HGKEKGKLVGRSP 433
           M  Q+ + V  ER   L +         N   VG+ +E+L+   E     E  ++ GR+ 
Sbjct: 351 MDGQLPKEVVQERYERLVELQNAISWEENKKIVGRRVELLVAAGEGRKDAETHRMSGRAR 410

Query: 434 WLQSVVLN------SKNHNIGDIIKVRITDVKISTLYGE 466
             + V          +    GD+++  +T      L  +
Sbjct: 411 DGRLVHFTPAGAHVDRAVRPGDVVETVVTYGAPHHLVAD 449


>gi|307700980|ref|ZP_07638005.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Mobiluncus mulieris
           FB024-16]
 gi|307613975|gb|EFN93219.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Mobiluncus mulieris
           FB024-16]
          Length = 547

 Score =  417 bits (1071), Expect = e-114,   Method: Composition-based stats.
 Identities = 161/508 (31%), Positives = 251/508 (49%), Gaps = 57/508 (11%)

Query: 5   IKLIGVAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDD--- 61
           +K   VA+      ++ + P+ + V + GCQMN +DS RM  +  + G   V+S+ +   
Sbjct: 1   MKTAAVANRPLSPAERGL-PRTYHVVTLGCQMNEHDSERMAGLLDAAGMVPVSSVPEKAA 59

Query: 62  ---------ADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQA 112
                    AD++VLNTC +RE AA K+Y  LG++  +K    +E   +++ V GC AQ 
Sbjct: 60  RATRAGDGGADVVVLNTCSVRENAANKLYGHLGQLAEVK----RERPGMMIAVGGCFAQQ 115

Query: 113 EGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNR 172
           EG  ILRR+P V+ + G      LP LL RA   +            F  +       +R
Sbjct: 116 EGSGILRRAPWVDAIFGTHNIDMLPVLLRRAELRQEAAVELEETLKVFPSMLPA----HR 171

Query: 173 KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNV 232
               +A+++I  GC+  CTFC+VP  RG E  R   +++ E + ++  G  E+TLLGQNV
Sbjct: 172 TSPASAWVSISVGCNNTCTFCIVPSLRGRERDREPEEILRELQAVVAQGAVEVTLLGQNV 231

Query: 233 NAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLH 292
           N+  G G  G +  F+ LL       GL RLR+ + HP   ++ +I A  +   +MP LH
Sbjct: 232 NS-YGNGF-GRRGAFAQLLREAGRTPGLERLRFASPHPAAFTEDVIAAMAETPTVMPSLH 289

Query: 293 LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352
            P+QSGSDR+L+ M R +    + +I+  +R   P+ AI++D IVGFPGETD DF AT+ 
Sbjct: 290 FPLQSGSDRVLRQMRRSYRVERFLRILGEVRDAIPEAAITTDVIVGFPGETDADFEATLR 349

Query: 353 LVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQ 412
           ++++  ++ AF+F YS R GTP ++  +QV   V +ER   L           N+   GQ
Sbjct: 350 VMEQARFSAAFTFIYSRRPGTPAADREDQVPSEVVSERYQRLLALQERISTEENERLEGQ 409

Query: 413 IIEVLIEKHG---KEKGKLVGRSPWLQSVVL----------------------------N 441
            +EVL+ + G   +E G++ GR+   + V                               
Sbjct: 410 TVEVLVGEQGTKDRETGRMSGRARDNRLVHFALPPSLSQSDLQKGNGSAITHSGGKLMHP 469

Query: 442 SKN---HNIGDIIKVRITDVKISTLYGE 466
                    GD + V++T      L  +
Sbjct: 470 GDEPPMPRPGDFVTVQVTHGAPHHLVAD 497


>gi|33240828|ref|NP_875770.1| 2-methylthioadenine synthetase [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
 gi|81664182|sp|Q7VAS5|MIAB_PROMA RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|33238357|gb|AAQ00423.1| 2-methylthioadenine synthetase [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
          Length = 466

 Score =  417 bits (1071), Expect = e-114,   Method: Composition-based stats.
 Identities = 172/454 (37%), Positives = 265/454 (58%), Gaps = 23/454 (5%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           +++ ++GCQMN  DS RM  +  + GY++  +   ADL++ NTC IR+ A +KVYS+LGR
Sbjct: 23  YWITTFGCQMNKADSERMAGILQAMGYQKAKTELCADLVLYNTCTIRDNAEQKVYSYLGR 82

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
               K    K    L +VVAGCVAQ EGE +LRR P +++V+GPQ   RL +LL +   G
Sbjct: 83  QAIRK----KSSPHLKLVVAGCVAQQEGESLLRRVPELDLVMGPQHANRLEDLLNQVDNG 138

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           ++VV T+  +    E L+       R   + A++ +  GC++ CT+CVVP  RG E SR 
Sbjct: 139 QQVVATEEHL--ILEDLTAAR----RDSNICAWVNVIYGCNERCTYCVVPSVRGKEQSRE 192

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG------EKCTFSDLLYSLSEIKGL 260
              +  E   L   G  E+TLLGQN++A  G+ L G       + T +DLLY + +I G+
Sbjct: 193 PKAIKLEIEDLAKKGFKEVTLLGQNIDA-YGRDLPGISSSGRRENTLTDLLYFIHDINGI 251

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+ TSHPR  +  LI+A  +L  L  + H+P QSG + +LK M R +T  +YR+IID
Sbjct: 252 NRIRFATSHPRYFTTRLIEACAELPKLCEHFHIPFQSGDNEVLKRMGRGYTIEKYRRIID 311

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           +IR + P+ +ISSD IV FPGE +  F+ T+ ++ +IG+ Q  +  YS R  TP ++  E
Sbjct: 312 KIRELMPNSSISSDVIVAFPGEDESQFQNTLKIIREIGFDQVNTAAYSQRPNTPAASWAE 371

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVV 439
           Q+ E+VK +RL  L   + +     N     QI+EVL E    K + +L+GR+   +   
Sbjct: 372 QLPESVKIDRLKELNLLVEQTAKDKNTRYHNQIVEVLAEGINPKNQEQLMGRTRTNRLTF 431

Query: 440 L-----NSKNHNIGDIIKVRITDVKISTLYGELV 468
                    ++N GD++KV+I++++  +L G  +
Sbjct: 432 FSKIGPKKYSYNPGDLVKVKISEIRAFSLTGSPI 465


>gi|283778559|ref|YP_003369314.1| RNA modification enzyme, MiaB family [Pirellula staleyi DSM 6068]
 gi|283437012|gb|ADB15454.1| RNA modification enzyme, MiaB family [Pirellula staleyi DSM 6068]
          Length = 475

 Score =  417 bits (1071), Expect = e-114,   Method: Composition-based stats.
 Identities = 176/465 (37%), Positives = 262/465 (56%), Gaps = 25/465 (5%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +R ++++ GCQMNV DS  +      +GYE       AD+++ NTC +RE+A  K YS L
Sbjct: 2   KRLYIETVGCQMNVLDSEMVVASLRKRGYELERDEASADVLLFNTCSVREQAENKTYSAL 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR+R+LK    K   D ++ V GC+AQ + + +  R+P V++VVGP    R+P+L+++  
Sbjct: 62  GRLRSLK----KANPDKIIGVMGCMAQKDQQLVFDRAPYVDLVVGPGQLSRIPDLIDQVA 117

Query: 145 FGK---------RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
            G          R    +  V    E    +     R     A+L IQ GCDKFCT+C+V
Sbjct: 118 AGHGKQMAVSLGRKDAANEEVRRSHETFDPLRDPTMRPTPFQAYLRIQIGCDKFCTYCIV 177

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
           P TRG E  R   Q+ DEAR L D G  EITL+GQ VN++R K  +      SDLL +LS
Sbjct: 178 PSTRGPEQGRPPQQIYDEARILADQGCKEITLIGQTVNSYRYKSGE-STTRLSDLLVNLS 236

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
           EI G+ RL++ T++P+DM++ L+ A  DL  + PYLH+P QSGS+ +L  M R ++  +Y
Sbjct: 237 EIDGIKRLKFVTNYPKDMTNDLLAAVRDLPKVSPYLHVPAQSGSNTVLTRMKRGYSVEDY 296

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
           R+++ RI  + PD A++SDFIVGF GET+ DF AT  LV    +  +F FKYS R GT G
Sbjct: 297 REMMARIYEMVPDAAVTSDFIVGFCGETEADFEATKQLVSDCRFKNSFIFKYSERPGTKG 356

Query: 376 SNML-EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-------KG- 426
           + +L + +  +VK  R   L +         N   +GQ +EVL+E            +G 
Sbjct: 357 AELLADDIPFDVKHRRNNELLELQNRISEQENQKFLGQRVEVLVEGPSSRAVSRGEVEGD 416

Query: 427 --KLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
             +L GR+P  + VV +      G+++++ I +    TL+G +V 
Sbjct: 417 LVQLTGRTPCDRIVVFDGNRRLTGELVQLAIYECAPHTLFGAIVT 461


>gi|222098978|ref|YP_002533546.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Thermotoga neapolitana
           DSM 4359]
 gi|221571368|gb|ACM22180.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Thermotoga neapolitana
           DSM 4359]
          Length = 443

 Score =  416 bits (1070), Expect = e-114,   Method: Composition-based stats.
 Identities = 162/444 (36%), Positives = 258/444 (58%), Gaps = 16/444 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           RF++K++GCQMN  DS  M  +   +G+   ++ ++AD++++NTC +R K+ EK YS LG
Sbjct: 2   RFYIKTFGCQMNENDSETMAGLLMKEGFTPASAPEEADVVIINTCAVRRKSEEKAYSELG 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           ++  +K  R      L+V VAGCVA+ E E++L R    + V+G +   R+ E +++A  
Sbjct: 62  QMLKIKRKRK-----LVVGVAGCVAEKEREKLLER--GADFVLGTRAVPRVTEAVKKALE 114

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G++V   +  +++    L  +     R     A++TI  GCD+FCT+C+VPYTRG E SR
Sbjct: 115 GEKVALFEDHLDEYTHELPRI-----RTSRHHAWVTIIHGCDRFCTYCIVPYTRGRERSR 169

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            ++ +++E +KL + G  E+T LGQNV+A  GK L  +  + + LL   S+I+G+ R+ +
Sbjct: 170 PMADILEEVKKLAEQGYREVTFLGQNVDA-YGKDLK-DGSSLAKLLEEASKIEGIERIWF 227

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
            TS+P D SD LI+       +   +HLPVQSGS+RILK MNRR+T  EY  ++++IRS 
Sbjct: 228 LTSYPTDFSDELIEVIAKNPKVAKSVHLPVQSGSNRILKLMNRRYTKEEYLALLEKIRSK 287

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML-EQVDE 384
            P++AISSD IVGFP ET++DF  T+DLV+K  + +     YSPR GT       + V  
Sbjct: 288 VPEVAISSDIIVGFPTETEEDFMETVDLVEKAQFERLNLAIYSPREGTVAWKYYKDDVPY 347

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
             K  R+  L    +      N+   G+ + +++E   K  G   GR    + +    ++
Sbjct: 348 EEKVRRMQFLMNLQKRINRKLNERYRGKTVRIIVEAQAK-NGLFYGRDIRNKIIAFEGED 406

Query: 445 HNIGDIIKVRITDVKISTLYGELV 468
             IG    V++  +    LYG++V
Sbjct: 407 WMIGRFADVKVEKITAGPLYGKVV 430


>gi|160939143|ref|ZP_02086494.1| hypothetical protein CLOBOL_04037 [Clostridium bolteae ATCC
           BAA-613]
 gi|158438106|gb|EDP15866.1| hypothetical protein CLOBOL_04037 [Clostridium bolteae ATCC
           BAA-613]
          Length = 502

 Score =  416 bits (1070), Expect = e-114,   Method: Composition-based stats.
 Identities = 169/469 (36%), Positives = 259/469 (55%), Gaps = 26/469 (5%)

Query: 13  MVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHI 72
            ++++  +   P    + ++GCQMN  DS ++  +  + GY+ V S + AD ++ NTC +
Sbjct: 40  QLAELSRRLGRPLTCCINTFGCQMNARDSEKLLGILETIGYQAVES-EKADFVLFNTCTV 98

Query: 73  REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGP 130
           RE A  +VY  LG++   K    K   D+++ + GC+ Q E   E+I +    V+++ G 
Sbjct: 99  RENANLRVYGRLGQLGAYK----KTHPDMMIALCGCMMQEEEVVEKIRKSYRYVDLIFGT 154

Query: 131 QTYYRLPEL----LERARFG-------KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAF 179
              ++L EL    LER   G       K VVD     +   E L +      RK    + 
Sbjct: 155 HNIFKLAELVSLCLERRTQGGQKQGKTKMVVDVWKDTDQIVEDLPV-----ERKFPFKSG 209

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
           + I  GC+ FC++C+VPY RG E SR   +++ E +KL  +GV EI LLGQNVN+  GK 
Sbjct: 210 VNIMFGCNNFCSYCIVPYVRGRERSRRPEEIIKEIQKLAADGVVEIMLLGQNVNS-YGKN 268

Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
           LD    TF+ LL  + +I G+ R+R+ TSHP+D+SD LI+     + +  +LHLP+QSGS
Sbjct: 269 LD-NPMTFAQLLEEVEKIDGIERIRFMTSHPKDLSDELIEVMARSEKICRHLHLPLQSGS 327

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
            RILK MNRR+T  +Y  + +RI+   P I++++D IVGFPGETD+DF  TMD+V ++G+
Sbjct: 328 SRILKVMNRRYTKEQYLDLAERIKKAVPGISLTTDIIVGFPGETDEDFEETMDVVRRVGF 387

Query: 360 AQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419
             AF+F YS R GTP + M +QV E +  ER   L K++++         V  + EVL+E
Sbjct: 388 DSAFTFIYSKRTGTPAAAMEDQVPEAIVKERFDRLLKEVQDISAEVCGRDVRTVQEVLVE 447

Query: 420 KHGKE-KGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
           +      G + GR      V        IG ++ V + + K     G +
Sbjct: 448 EVNDHAPGLMTGRLSNNTVVHFPGDASMIGRLVPVYLQESKGFYYMGHI 496


>gi|308272044|emb|CBX28652.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [uncultured Desulfobacterium sp.]
          Length = 471

 Score =  416 bits (1070), Expect = e-114,   Method: Composition-based stats.
 Identities = 183/464 (39%), Positives = 272/464 (58%), Gaps = 26/464 (5%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           +  +  ++ ++GCQMNVYDS ++       GYE   S+D+ADLI++NTC IREKA +K +
Sbjct: 1   MKKKSLYINTFGCQMNVYDSQQIISQLNPIGYEVSESLDEADLIIVNTCAIREKAQQKAF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           SF GR+  LK         L++   GCVAQ EG+ IL R   +++V G     RLPE + 
Sbjct: 61  SFFGRLAVLKRK----KPGLIICAGGCVAQQEGKRILERFSYIDLVFGTHALKRLPEHII 116

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
                +  +      ++  E  S+     N    VT F+TI  GCD +CT+CVVP+ RG 
Sbjct: 117 NISKKRCRISDVEMTDEILEFPSVASQVTN--NIVTRFVTIMRGCDNYCTYCVVPHVRGP 174

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           EISR    ++DE RKL+D+GV E+TLLGQNVN++   G+    C+F +LL  +SE +GL 
Sbjct: 175 EISRKPEHIIDEIRKLVDSGVQEVTLLGQNVNSY---GIKEGLCSFPELLRLVSETEGLF 231

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHP+D+S  L+ A  DLD L  ++HLPVQSGS+ ILK MNR++T   Y + ID+
Sbjct: 232 RIRFTTSHPKDLSQELVFAFRDLDKLCNHIHLPVQSGSNNILKRMNRKYTRELYLEKIDK 291

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R + PDIAI+SD IVGFPGET+DDF+AT+DLV ++ +   F+F+YS R+  P +   ++
Sbjct: 292 LRKISPDIAITSDVIVGFPGETEDDFKATLDLVKEVEFDSLFTFEYSDRIKAPAAKFSDK 351

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-----------KLVG 430
           + +++K  RL  L +         + A VG    +L++   K++               G
Sbjct: 352 ISDDIKNGRLRELLELQEYYTTKKHRALVGSNELILVDGFSKKQDVASDRKGSEGIYWSG 411

Query: 431 RSPWLQSVVLNS------KNHNIGDIIKVRITDVKISTLYGELV 468
           R+   + V   S       + +IG  I V+I    + +L G+ V
Sbjct: 412 RTSTNKIVNFTSGDFFLKDDISIGKKINVKIEKAFLHSLLGKPV 455


>gi|197303019|ref|ZP_03168067.1| hypothetical protein RUMLAC_01746 [Ruminococcus lactaris ATCC
           29176]
 gi|197297874|gb|EDY32426.1| hypothetical protein RUMLAC_01746 [Ruminococcus lactaris ATCC
           29176]
          Length = 440

 Score =  416 bits (1070), Expect = e-114,   Method: Composition-based stats.
 Identities = 141/449 (31%), Positives = 228/449 (50%), Gaps = 16/449 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC  N+ D+  M  +  S+GYE  +   +AD+IV+NTC     A E+    + 
Sbjct: 2   KILFISLGCDKNLVDTEVMLGLLASKGYEMTDDEQEADIIVINTCCFIHDAKEESIQNIL 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +  LK    KEG    ++V GC+A+   +EIL   P V+ V+G   Y ++ + ++ A  
Sbjct: 62  EMAELK----KEGKVKALIVTGCMAERYKDEILEEIPEVDEVLGTTAYDKILDAVDAALE 117

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G + V     + D                G  A+L I EGCDK CT+C++P  RG   S 
Sbjct: 118 GNQEV----ILSDIDALPLPETKRLVTTGGHFAYLKIAEGCDKHCTYCIIPKVRGNYRSV 173

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            + ++V+EAR+L + GV E+ L+ Q      GK L GEK +   L+  L  I G+  +R 
Sbjct: 174 PMERLVNEARELAEQGVKELILVAQETT-LYGKDLYGEK-SLHKLVKELCNISGIRWIRI 231

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
              +P +++D LI+   +   +  YL LP+Q  +D ILK M RR T  E   I++++RS 
Sbjct: 232 LYCYPEEITDELIQVMKEEPKVCHYLDLPIQHANDTILKRMGRRTTKQELVHIVEKLRSE 291

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            PDI + +  I GFPGET +     M  VD++ + +   F YSP   TP + M EQ++E 
Sbjct: 292 IPDICLRTTLITGFPGETAEQHEELMQFVDEMEFDRLGVFTYSPEEDTPAAGMPEQIEEE 351

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVLN 441
           VK +R   + +  +E      +  +G+ + V+IE    ++   VGR+    P +  ++  
Sbjct: 352 VKEDRQAEIMELQQEIAFDKAEDMIGREVLVMIEGKVADENAYVGRTYRDAPNVDGLIFI 411

Query: 442 SKNHNI--GDIIKVRITDVKISTLYGELV 468
           + +  +  GD  +V++T      L GEL+
Sbjct: 412 NTDEELLSGDFARVKVTGALDYDLIGELL 440


>gi|149928259|ref|ZP_01916503.1| hypothetical protein LMED105_15758 [Limnobacter sp. MED105]
 gi|149823065|gb|EDM82306.1| hypothetical protein LMED105_15758 [Limnobacter sp. MED105]
          Length = 404

 Score =  416 bits (1070), Expect = e-114,   Method: Composition-based stats.
 Identities = 186/408 (45%), Positives = 270/408 (66%), Gaps = 12/408 (2%)

Query: 63  DLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSP 122
           D+I+ NTC +REKA EKV+S LGR+++LK    K   +L++ V GCVA  EG+ I+ R+P
Sbjct: 1   DIILFNTCSVREKAQEKVFSDLGRVKHLK----KSNPNLIIGVGGCVASQEGKAIVDRAP 56

Query: 123 IVNVVVGPQTYYRLPELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLT 181
            V+VV GPQT +RLP+L+++ R   R  VD  +   +KF+ L +         G TAF++
Sbjct: 57  YVDVVFGPQTLHRLPQLIKQRRDTHRPQVDISFPEIEKFDNLPLAKNT-----GATAFVS 111

Query: 182 IQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD 241
           I EGC K+C+FCVVPYTRG EISR    V+ E   L D GV EI LLGQNVNA+RGK  D
Sbjct: 112 IMEGCSKYCSFCVVPYTRGEEISRPFDDVLVEIADLADQGVREINLLGQNVNAYRGKMGD 171

Query: 242 G-EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300
             E   F+ LL  +SE+ G+ R+R+TTSHP++    LI+A+  L  L+ +LHLPVQ+GSD
Sbjct: 172 TSEIADFALLLEYVSEVPGIERIRFTTSHPKEFGPRLIQAYAKLPKLVDHLHLPVQAGSD 231

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
           RIL +M R +TA EY+ II ++R +RP+I++SSDFIVGFPGE++ DF  TMDL++ +G+ 
Sbjct: 232 RILSAMKRGYTALEYKSIIRKLREIRPNISMSSDFIVGFPGESEADFEKTMDLINAVGFD 291

Query: 361 QAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
            +FSF YSPR GTP +++ + VD+  K +RL  LQK +++   S + + VG   +VL+E 
Sbjct: 292 TSFSFVYSPRPGTPAADLEDGVDQVTKLKRLARLQKTIQDHATSISKSMVGTRQKVLVEG 351

Query: 421 HG-KEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
              K+  +L GR+   + V        +G I+++ I +   ++L G++
Sbjct: 352 PSRKDPAELAGRTENNRVVNFAGNARMVGQIVELDIVEAYPNSLRGQV 399


>gi|327540187|gb|EGF26778.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Rhodopirellula baltica
           WH47]
          Length = 479

 Score =  416 bits (1070), Expect = e-114,   Method: Composition-based stats.
 Identities = 172/464 (37%), Positives = 263/464 (56%), Gaps = 24/464 (5%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + +  ++K+ GCQMNV DS  +       GY  V++  +ADL++ NTC IRE+A EK YS
Sbjct: 4   MTKTVYIKTVGCQMNVLDSEMVIADLKRHGYTVVDTPGEADLLLYNTCSIREQAEEKTYS 63

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            LG+++  K        +  + V GC+AQ + E I RR+P V++VVGP   + +P++L +
Sbjct: 64  ALGKLKETKARH----PEKTIGVMGCMAQKDQETIFRRAPFVDMVVGPGQLHAIPDMLTK 119

Query: 143 ARFGK-RVVDTDYSVED--------KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC 193
              G+ R +      +D          E    +     R     A+L IQ GCDKFCT+C
Sbjct: 120 VTSGEGRQIAVSLGRKDGKQTVVARSHETFDPLRDPTMRPTPFQAYLRIQIGCDKFCTYC 179

Query: 194 VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS 253
           VVP TRG E  RS  ++V EAR L + G  EITLLGQ VN++R +G DGE    + LL  
Sbjct: 180 VVPNTRGPEQGRSPEEIVSEARVLAEQGALEITLLGQTVNSYRHRGPDGE-TDMAGLLER 238

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
           L +I GL R+++ T++P+DM+  L++   DL  + PYLH+P QSGSD +LK M R +T  
Sbjct: 239 LHDIDGLKRIKFVTNYPKDMTARLLETIRDLPKVSPYLHVPAQSGSDAVLKRMKRGYTIA 298

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
           +Y ++ +RI ++ P+ ++SSDFIVGF GETD+DF+ ++ L+++  +  +F F+YS R GT
Sbjct: 299 DYMEMFERIETILPEASVSSDFIVGFCGETDEDFQKSVKLIERCRFKNSFIFQYSVREGT 358

Query: 374 P-GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG------ 426
              +N+++ V   VKA R   L           N   +G  +EVL+E   K+        
Sbjct: 359 KAAANLIDDVPREVKAARNNELLAVQDRISKEDNQKLIGDTVEVLVEGPSKKADKSDLDA 418

Query: 427 ---KLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
              ++ GR+   + VV +      G ++ ++I DV   TL G +
Sbjct: 419 PIVQMTGRTICDRIVVFDGNRRQAGQLMDIQIDDVSSHTLIGRV 462


>gi|297529334|ref|YP_003670609.1| RNA modification enzyme, MiaB family [Geobacillus sp. C56-T3]
 gi|297252586|gb|ADI26032.1| RNA modification enzyme, MiaB family [Geobacillus sp. C56-T3]
          Length = 449

 Score =  416 bits (1070), Expect = e-114,   Method: Composition-based stats.
 Identities = 137/450 (30%), Positives = 237/450 (52%), Gaps = 20/450 (4%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           +P      + GC++N Y++  +  +F   GYER      AD+ V+NTC +     +K   
Sbjct: 1   MP-TVAFHTLGCKVNHYETEAIWQLFKKAGYERKEFESRADVYVINTCTVTNTGDKKSRQ 59

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            + R        ++   D +V V GC AQ    E++   P V++V+G Q  +++ + +E+
Sbjct: 60  VIRRA-------VRRNPDAVVCVTGCYAQTSPAEVMA-IPGVDIVIGTQDRHKILDYIEQ 111

Query: 143 ARFGKRVVDTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
            +  ++ ++  +++     FE + + +          A L IQEGC+ FCTFC++P+ RG
Sbjct: 112 FQRERQPINAVHNIMKTRVFEEMDVPE----FTDRTRASLKIQEGCNNFCTFCIIPWARG 167

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE-IKG 259
           +  SR   +++ +AR+L+  G  EI L G +     G G D +   F+ LL  L E + G
Sbjct: 168 LMRSRDPQEIIRQARQLVAAGYKEIVLTGIHTG---GYGTDLKDYNFASLLRDLDEQVPG 224

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           L RLR ++     ++D +I      + ++ +LH+P+QSGS+ +LK M R++T   Y + +
Sbjct: 225 LRRLRISSIEASQITDEVIDVLKRSEKIVRHLHIPLQSGSNTVLKRMRRKYTVEFYAERL 284

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            R+R V P++A++SD IVGFPGET+D+F  T + + +  +++   F YS R GTP + M 
Sbjct: 285 ARLREVFPELAVTSDVIVGFPGETEDEFMETYNFIREQRFSELHVFPYSKRTGTPAARMP 344

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRSPWLQSV 438
            Q+DE  K +R+  L     +    +     GQ++EV+ E+  KE     VG +     V
Sbjct: 345 NQIDEETKHDRVRRLIALSDQLAKEYASRFEGQVLEVIPEERDKERPDLYVGYTDNYLKV 404

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468
              +    +G+++KV+IT        GE V
Sbjct: 405 RFPATEEMVGELVKVKITKAGYPYNEGEFV 434


>gi|289178890|gb|ADC86136.1| tRNA 2-methylthioadenosine synthase [Bifidobacterium animalis
           subsp. lactis BB-12]
          Length = 515

 Score =  416 bits (1069), Expect = e-114,   Method: Composition-based stats.
 Identities = 160/453 (35%), Positives = 242/453 (53%), Gaps = 23/453 (5%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD----DADLIVLNTCHIREKAAEKVYS 82
           ++V + GCQMNV+DS R+  +    GY   +       D D++++NTC +RE A E++Y 
Sbjct: 61  YYVHTLGCQMNVHDSERIAGVMEENGYRPASEEQFLAHDVDVVIMNTCAVRENATERMYG 120

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +G+ +  K           + + GC+AQ + E I +R+P V+ V G +    LP LL++
Sbjct: 121 TIGKWKRFK----YRNPHAQIAIGGCMAQLDRERIAKRTPWVDAVFGTKNIEDLPALLDQ 176

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           AR  +    T   V +    L       +R    +A++ I  GC+  CTFC+VP TRG E
Sbjct: 177 ARAAQH---TQVKVNEDL-TLFPSQLPAHRASAHSAWVAISMGCNNTCTFCIVPTTRGKE 232

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
             R    V+ E R+ + NG  EITLLGQNVN+  G G+ G++  FS LL +  EI+GL R
Sbjct: 233 RDRRPGDVLAEIRETVTNGAKEITLLGQNVNS-YGYGI-GDRYAFSKLLRACGEIEGLER 290

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+T+ HP   +D +I A  +   +M  LH P+QSGSDRIL++M R + +  +  I+ +I
Sbjct: 291 VRFTSPHPAAFTDDVIAAMAETPNVMHQLHFPLQSGSDRILRAMRRSYRSERFLGILAKI 350

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R   PD  IS+D IVGFPGET++DF+ T+ +V++  ++ AF+F YSPR GTP + M EQV
Sbjct: 351 REAMPDAQISTDIIVGFPGETEEDFQQTLRVVEEARFSSAFTFIYSPRPGTPAAAM-EQV 409

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK----HGKEKGKLVGRSPWLQSV 438
             +V  +RL  L            +  VG+ +EV+I         E  +  GR      V
Sbjct: 410 PYDVALDRLERLLAVQERITEEILEKFVGRDVEVMITGVTGKKDAETHRYTGREKTGVLV 469

Query: 439 VLNSKN----HNIGDIIKVRITDVKISTLYGEL 467
            +          IGD +   +T      L  + 
Sbjct: 470 HVGVPEGHDAPQIGDFVTATVTHAGRHNLIADP 502


>gi|116072319|ref|ZP_01469586.1| hypothetical protein BL107_11046 [Synechococcus sp. BL107]
 gi|116064841|gb|EAU70600.1| hypothetical protein BL107_11046 [Synechococcus sp. BL107]
          Length = 518

 Score =  416 bits (1069), Expect = e-114,   Method: Composition-based stats.
 Identities = 176/456 (38%), Positives = 263/456 (57%), Gaps = 23/456 (5%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + +++ ++GCQMN  DS RM  +  + GY    +  DADL++ NTC IR+ A +KVYS+L
Sbjct: 70  RSYWITTFGCQMNKADSERMAGILETMGYREATAELDADLVLYNTCTIRDNAEQKVYSYL 129

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR    K    ++  +L +VVAGCVAQ EGE +LRR P +++V+GPQ   RL  LL++  
Sbjct: 130 GRQAQRK----RDNPNLTLVVAGCVAQQEGESLLRRVPELDLVMGPQHANRLETLLQQVD 185

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G++VV T+       E ++       R   +  ++ +  GC++ CT+CVVP  RG E S
Sbjct: 186 SGQQVVATEE--HHILEDITTAR----RDSAICGWVNVIYGCNERCTYCVVPSVRGQEQS 239

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG------EKCTFSDLLYSLSEIK 258
           R    +  E   L   G  EITLLGQN++A  G+ L G       + T +DLL+ + +++
Sbjct: 240 RQPGAIRLEMEGLAAQGFKEITLLGQNIDA-YGRDLPGITAEGRREHTLTDLLHQVHDVE 298

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           GL RLR+ TSHPR  ++ LI A  DL  +  + H+P QSG + +LKSM R +T   YR+I
Sbjct: 299 GLERLRFATSHPRYFTERLIDACADLPKVCEHFHIPFQSGDNELLKSMARGYTVERYRRI 358

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           IDRIR   PD +IS+D IVGFPGETD  +R T++L+D+I + Q  +  YSPR  TP +  
Sbjct: 359 IDRIRDRMPDASISADVIVGFPGETDAQYRRTLNLIDEIAFDQVNTAAYSPRPNTPAATW 418

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQS 437
             Q+ E+VK ERL  +   +       N    G+  EVL E    K+  +L+GR+   + 
Sbjct: 419 DNQLSESVKVERLKEINALVERNARERNARYQGRTEEVLAEGINPKDPEQLMGRTRTNRL 478

Query: 438 VVLNSKN-----HNIGDIIKVRITDVKISTLYGELV 468
              ++ +     +  GD++ VRI  V+  +L G  +
Sbjct: 479 TFFSATSADGHLYQPGDLVNVRIDAVRSFSLSGTPL 514


>gi|189218731|ref|YP_001939372.1| 2-methylthioadenine synthetase [Methylacidiphilum infernorum V4]
 gi|229890614|sp|B3E0M0|MIAB_METI4 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|189185589|gb|ACD82774.1| 2-methylthioadenine synthetase [Methylacidiphilum infernorum V4]
          Length = 467

 Score =  416 bits (1069), Expect = e-114,   Method: Composition-based stats.
 Identities = 149/446 (33%), Positives = 253/446 (56%), Gaps = 7/446 (1%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
            F+K++GCQMNV DS ++   F  +GY+  +S   AD+I++NTC +R  A EK    L  
Sbjct: 4   VFIKTFGCQMNVRDSEQVLQDFIERGYQIASSEKWADIILINTCSVRAMAEEKAIDKLAS 63

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           ++  K    K+  +L++ + GC+AQ  G EI  +   V++V+G Q ++++ E+ +     
Sbjct: 64  LKTAK----KKNPNLVLGIIGCMAQNRGREIAEKYRFVDLVLGTQKFHKVAEIADNLLKN 119

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
                +   +  +    + ++   + K    A+++I +GC   C+FC+VP TRG E SR 
Sbjct: 120 PDRSSSYVDLSKEEAAHNAINKHLSTKAQPIAYVSIMQGCSMHCSFCIVPTTRGEERSRP 179

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG--EKCTFSDLLYSLSEIKGLVRLR 264
           + ++ +E ++L +  V EI LLGQ VN +  K       K  F  LL  LS I+ + R+R
Sbjct: 180 IDEIFEEVKRLAETSVKEIVLLGQIVNRYGAKEFPWVKGKSPFVQLLEKLSTIEEIKRIR 239

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +T+ HP    + LI A  D+  L  ++HLPVQSGSD+ILK+M R ++  ++  ++D++R 
Sbjct: 240 FTSPHPLGFKEDLIAALRDIPQLCEHVHLPVQSGSDKILKAMRRGYSRSKFLSLVDKLRK 299

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             P +A+S+D IVG+PGET++DF+ T  L++++ +  AF F+YS R GT  +++ +Q+ E
Sbjct: 300 AIPQLALSTDIIVGYPGETEEDFQQTCSLLNEVRFDNAFIFRYSAREGTTAASLGDQLSE 359

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNSK 443
            VK ER   L +   +  +      VGQ++E+L+E   K+   K  GR+     V++   
Sbjct: 360 EVKFERNYRLLEIQNKITMEKAQKWVGQVVEILVEGESKKNASKFQGRTRTNHLVIIPKN 419

Query: 444 NHNIGDIIKVRITDVKISTLYGELVV 469
               G+ + VRI +    T YG  ++
Sbjct: 420 ERWRGEFLPVRIVETTGHTFYGTPLI 445


>gi|148269423|ref|YP_001243883.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Thermotoga
           petrophila RKU-1]
 gi|170288080|ref|YP_001738318.1| RNA modification protein [Thermotoga sp. RQ2]
 gi|229891014|sp|A5IJD4|MIAB_THEP1 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|229891017|sp|B1L8F3|MIAB_THESQ RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|147734967|gb|ABQ46307.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Thermotoga petrophila
           RKU-1]
 gi|170175583|gb|ACB08635.1| RNA modification enzyme, MiaB family [Thermotoga sp. RQ2]
          Length = 443

 Score =  416 bits (1069), Expect = e-114,   Method: Composition-based stats.
 Identities = 165/444 (37%), Positives = 255/444 (57%), Gaps = 16/444 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           RF++K++GCQMN  DS  M  +   +G+   ++ ++AD++++NTC +R K+ EK YS LG
Sbjct: 2   RFYIKTFGCQMNENDSETMAGLLMKEGFTPASAPEEADVVIINTCAVRRKSEEKAYSELG 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           ++  +K  R      L+V VAGCVA+ E E++L R    + V+G +   ++ E ++RA  
Sbjct: 62  QMLKIKRKRK-----LVVGVAGCVAEKEREKLLER--GADFVLGTRAVLKVTEAVKRALQ 114

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G++V   +  +++    L  +     R     A++TI  GCD+FCT+C+VPYTRG E SR
Sbjct: 115 GEKVALFEDHLDEYTHELPRI-----RSSKHHAWVTIIFGCDRFCTYCIVPYTRGREKSR 169

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            +  +++E R+L   G  E+T LGQNV+A  GK L  +  + + LL   S+I+G+ R+ +
Sbjct: 170 PMEDILEEVRELAKQGYREVTFLGQNVDA-YGKDLK-DGSSLAKLLEEASKIEGIERIWF 227

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
            TS+P D SD LI+       +   +HLPVQSGS+RILK MNR +T  EY  +++RIRS 
Sbjct: 228 LTSYPTDFSDELIEVIARNPKVAKSVHLPVQSGSNRILKLMNRSYTKEEYLALLERIRSK 287

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN-MLEQVDE 384
            PD+AISSD IVGFP ET++DF  T+DLV+K  + +     YSPR GT       ++V  
Sbjct: 288 VPDVAISSDIIVGFPTETEEDFMETIDLVEKAQFERLNLAIYSPRKGTVAWKHYKDEVPY 347

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
             K  R+  L    +      N+   G+ + V++E   K  G   GR    + +    + 
Sbjct: 348 EEKVRRMQFLMNLQKRINRKLNERYKGKTVRVIVEAQAK-NGLFYGRDIRNKIIAFEGEE 406

Query: 445 HNIGDIIKVRITDVKISTLYGELV 468
             IG    V+I  +    LYG++V
Sbjct: 407 WMIGRFADVKIEKITAGPLYGKVV 430


>gi|253573595|ref|ZP_04850938.1| MiaB-like tRNA modifying enzyme YliG [Paenibacillus sp. oral taxon
           786 str. D14]
 gi|251847123|gb|EES75128.1| MiaB-like tRNA modifying enzyme YliG [Paenibacillus sp. oral taxon
           786 str. D14]
          Length = 442

 Score =  416 bits (1069), Expect = e-114,   Method: Composition-based stats.
 Identities = 132/452 (29%), Positives = 236/452 (52%), Gaps = 15/452 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + ++  + + GC+ N+ DS  M  +   +GY  V++ +DA +I++NTC   + A E+  +
Sbjct: 1   MTEKVKIVTLGCEKNLVDSEIMSGLIEQRGYSLVDNREDATVIIVNTCGFIDAAKEESVN 60

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +  + +LK S    G    ++V+GC+ Q   + ++   P ++ +VG   ++++  +++ 
Sbjct: 61  TILELADLKES----GRLKALIVSGCLTQRYKQALMEEMPEIDGIVGTGDFHQINRIVDE 116

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           A  GK+       V +  + L             T ++ I EGCD  CTFC +P  RG  
Sbjct: 117 ALKGKKPALVGNPVFNYEQALP----RKLSTARYTTYVKIAEGCDNNCTFCSIPIMRGKF 172

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SRS+  +++E R +   GV EI+L+ Q+     G  L GE    ++L+  +++++G+  
Sbjct: 173 RSRSMESILEEVRSMAAQGVKEISLIAQDST-NYGTDLYGE-FKLAELMDRVTQVEGVEW 230

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R   ++P   +D LI+       +  Y+ +P+Q   D ILK M R     + R++I +I
Sbjct: 231 VRLHYAYPGFFTDELIEMMATNPKICKYVDMPLQHSEDSILKRMRRPGRNRDIRELIAKI 290

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+  P++++ +  IVGFPGET++DF    + V +I + +   F YS    TP S + +QV
Sbjct: 291 RARIPNVSLRTSLIVGFPGETEEDFERLCEFVREIKFDRLGVFTYSKEEDTPASRLPDQV 350

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQS- 437
           DE VK  R   L +  RE   + +   +GQ+++VLIE++       VGRS    P +   
Sbjct: 351 DEEVKEWRANTLMEIQREVANANSSKYIGQVLDVLIERYDGRSDVYVGRSQYDAPEIDGE 410

Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
           V + +    +G++ KVRIT      L GE V+
Sbjct: 411 VYVTNCPVGLGELTKVRITHAFDYDLSGEAVL 442


>gi|219683412|ref|YP_002469795.1| (dimethylallyl)adenosine tRNA methylthiotransferase
           [Bifidobacterium animalis subsp. lactis AD011]
 gi|241191145|ref|YP_002968539.1| (dimethylallyl)adenosine tRNA methylthiotransferase
           [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|241196551|ref|YP_002970106.1| (dimethylallyl)adenosine tRNA methylthiotransferase
           [Bifidobacterium animalis subsp. lactis DSM 10140]
 gi|219621062|gb|ACL29219.1| RNA modification enzyme, MiaB family protein [Bifidobacterium
           animalis subsp. lactis AD011]
 gi|240249537|gb|ACS46477.1| hypothetical protein Balac_1121 [Bifidobacterium animalis subsp.
           lactis Bl-04]
 gi|240251105|gb|ACS48044.1| hypothetical protein Balat_1121 [Bifidobacterium animalis subsp.
           lactis DSM 10140]
 gi|295794134|gb|ADG33669.1| hypothetical protein BalV_1081 [Bifidobacterium animalis subsp.
           lactis V9]
          Length = 491

 Score =  416 bits (1069), Expect = e-114,   Method: Composition-based stats.
 Identities = 160/453 (35%), Positives = 242/453 (53%), Gaps = 23/453 (5%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD----DADLIVLNTCHIREKAAEKVYS 82
           ++V + GCQMNV+DS R+  +    GY   +       D D++++NTC +RE A E++Y 
Sbjct: 37  YYVHTLGCQMNVHDSERIAGVMEENGYRPASEEQFLAHDVDVVIMNTCAVRENATERMYG 96

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +G+ +  K           + + GC+AQ + E I +R+P V+ V G +    LP LL++
Sbjct: 97  TIGKWKRFK----YRNPHAQIAIGGCMAQLDRERIAKRTPWVDAVFGTKNIEDLPALLDQ 152

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           AR  +    T   V +    L       +R    +A++ I  GC+  CTFC+VP TRG E
Sbjct: 153 ARAAQH---TQVKVNEDL-TLFPSQLPAHRASAHSAWVAISMGCNNTCTFCIVPTTRGKE 208

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
             R    V+ E R+ + NG  EITLLGQNVN+  G G+ G++  FS LL +  EI+GL R
Sbjct: 209 RDRRPGDVLAEIRETVTNGAKEITLLGQNVNS-YGYGI-GDRYAFSKLLRACGEIEGLER 266

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+T+ HP   +D +I A  +   +M  LH P+QSGSDRIL++M R + +  +  I+ +I
Sbjct: 267 VRFTSPHPAAFTDDVIAAMAETPNVMHQLHFPLQSGSDRILRAMRRSYRSERFLGILAKI 326

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R   PD  IS+D IVGFPGET++DF+ T+ +V++  ++ AF+F YSPR GTP + M EQV
Sbjct: 327 REAMPDAQISTDIIVGFPGETEEDFQQTLRVVEEARFSSAFTFIYSPRPGTPAAAM-EQV 385

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK----HGKEKGKLVGRSPWLQSV 438
             +V  +RL  L            +  VG+ +EV+I         E  +  GR      V
Sbjct: 386 PYDVALDRLERLLAVQERITEEILEKFVGRDVEVMITGVTGKKDAETHRYTGREKTGVLV 445

Query: 439 VLNSKN----HNIGDIIKVRITDVKISTLYGEL 467
            +          IGD +   +T      L  + 
Sbjct: 446 HVGVPEGHDAPQIGDFVTATVTHAGRHNLIADP 478


>gi|308068737|ref|YP_003870342.1| hypothetical protein PPE_01968 [Paenibacillus polymyxa E681]
 gi|305858016|gb|ADM69804.1| Conserved hypothetical protein [Paenibacillus polymyxa E681]
          Length = 517

 Score =  416 bits (1069), Expect = e-114,   Method: Composition-based stats.
 Identities = 173/447 (38%), Positives = 265/447 (59%), Gaps = 14/447 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + + V ++GCQMN +DS  ++ +    GY+      +AD+I+LNTC IRE A +KV+  L
Sbjct: 74  KHYIVYTFGCQMNEHDSETIKGLLEQMGYQATEDRKEADIILLNTCAIRENAEDKVFGEL 133

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G +++LK         LL+ V GC++Q E     I+++   V+++ G    +RLP+L++ 
Sbjct: 134 GHLKHLKTE----KPGLLLGVCGCMSQEENVVNRIMQKHGFVDMIFGTHNIHRLPQLVKE 189

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           A F K +V   +S E       I++    ++ G+ A++ I  GCDKFCT+C+VP+TRG E
Sbjct: 190 ALFSKEMVVEVWSKEG-----DIIENLPKKREGMRAWVNIMYGCDKFCTYCIVPFTRGKE 244

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR    V+ E R L   G  EITLLGQNVNA  GK L      F DL+  + +I  + R
Sbjct: 245 RSRRPEDVIAEVRDLARQGFKEITLLGQNVNA-YGKDLKDLNYRFGDLMDDMRKIN-IPR 302

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHPRD  D L++  G    L+ ++HLPVQSG+  ILK MNR++T     ++  +I
Sbjct: 303 VRFTTSHPRDFDDHLVEVLGKGGNLVEHIHLPVQSGNTDILKKMNRKYTRERVLELAAKI 362

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           ++  P +++++D IVGFPGETD+ F  T+ LV ++GY  A++F YSPR GTP ++M + V
Sbjct: 363 KAAVPHVSLTTDIIVGFPGETDEQFEDTLSLVREVGYDFAYTFIYSPREGTPAASMEDNV 422

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVLN 441
             +VK ERL  L   + +  + FN    G+++EVL+E   K   K L GR+   + V   
Sbjct: 423 PMSVKKERLRRLNIAVNQNSLRFNSRLRGEVVEVLVEGESKNDSKVLAGRTRSNKLVHFE 482

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                IG  ++V+IT+     + G+LV
Sbjct: 483 GSKDLIGSFVQVKITEPMTFYIKGDLV 509


>gi|26353536|dbj|BAC40398.1| unnamed protein product [Mus musculus]
          Length = 588

 Score =  416 bits (1069), Expect = e-114,   Method: Composition-based stats.
 Identities = 155/479 (32%), Positives = 248/479 (51%), Gaps = 38/479 (7%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ ++++YGCQMNV D+     +    GY R +++ +AD+I+L TC IREKA + +++ L
Sbjct: 99  RKVYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCSIREKAEQTIWNRL 158

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            +++ LK  R +    L + + GC+A+    EIL R  +V+++ GP  Y  LP LL    
Sbjct: 159 HQLKVLKTKRPRSRVPLRIGILGCMAERLKGEILNREKMVDLLAGPDAYRDLPRLLAVVE 218

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G++  +   S+++ +  +  V          +AF++I  GCD  C++C+VP+TRG E S
Sbjct: 219 SGQQAANVLLSLDETYADIMPVQTS---PSATSAFVSIMRGCDNMCSYCIVPFTRGRERS 275

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAW-----------------RGKGLDGEKC-- 245
           R ++ ++DE RKL + G+ E+TLLGQNVN++                 RG   + +    
Sbjct: 276 RPVASILDEVRKLSEQGLKEVTLLGQNVNSFRDNSEVQFNNAGSANLSRGFTTNYKPKQG 335

Query: 246 --TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
              FS LL  +S I   +R+R+T+ HP+D  D +++   +   +   +HLP QSGS R+L
Sbjct: 336 GLRFSHLLDQVSRIDPEMRIRFTSPHPKDFPDEVLQLIRERHNICKQIHLPAQSGSSRVL 395

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
            +M R ++   Y  ++  +R   P +++SSDFI GF GET+DD R T+ L+ ++ Y   F
Sbjct: 396 DAMRRGYSREAYVALVHHVRETIPGVSLSSDFITGFCGETEDDHRQTVSLLREVQYNTGF 455

Query: 364 SFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422
            F YS R  T     + + V E VK  RL  L    RE+    N   VG    VL+E   
Sbjct: 456 LFAYSMRQKTRAYHRLKDDVPEEVKLRRLEELITVFREEASKANKTSVGYSQLVLVEGFS 515

Query: 423 KEKGK-LVGRSPWLQSVVLNSKN------------HNIGDIIKVRITDVKISTLYGELV 468
           K     L GR+     V+                    GD + V+IT     TL G ++
Sbjct: 516 KRSTTDLCGRNDANLKVIFPDAEVEDITNPGLKVRAQPGDYVLVKITSASSQTLKGHIL 574


>gi|183601356|ref|ZP_02962726.1| hypothetical protein BIFLAC_01822 [Bifidobacterium animalis subsp.
           lactis HN019]
 gi|183218962|gb|EDT89603.1| hypothetical protein BIFLAC_01822 [Bifidobacterium animalis subsp.
           lactis HN019]
          Length = 492

 Score =  416 bits (1069), Expect = e-114,   Method: Composition-based stats.
 Identities = 160/453 (35%), Positives = 242/453 (53%), Gaps = 23/453 (5%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD----DADLIVLNTCHIREKAAEKVYS 82
           ++V + GCQMNV+DS R+  +    GY   +       D D++++NTC +RE A E++Y 
Sbjct: 38  YYVHTLGCQMNVHDSERIAGVMEENGYRPASEEQFLAHDVDVVIMNTCAVRENATERMYG 97

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +G+ +  K           + + GC+AQ + E I +R+P V+ V G +    LP LL++
Sbjct: 98  TIGKWKRFK----YRNPHAQIAIGGCMAQLDRERIAKRTPWVDAVFGTKNIEDLPALLDQ 153

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           AR  +    T   V +    L       +R    +A++ I  GC+  CTFC+VP TRG E
Sbjct: 154 ARAAQH---TQVKVNEDL-TLFPSQLPAHRASAHSAWVAISMGCNNTCTFCIVPTTRGKE 209

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
             R    V+ E R+ + NG  EITLLGQNVN+  G G+ G++  FS LL +  EI+GL R
Sbjct: 210 RDRRPGDVLAEIRETVTNGAKEITLLGQNVNS-YGYGI-GDRYAFSKLLRACGEIEGLER 267

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+T+ HP   +D +I A  +   +M  LH P+QSGSDRIL++M R + +  +  I+ +I
Sbjct: 268 VRFTSPHPAAFTDDVIAAMAETPNVMHQLHFPLQSGSDRILRAMRRSYRSERFLGILAKI 327

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R   PD  IS+D IVGFPGET++DF+ T+ +V++  ++ AF+F YSPR GTP + M EQV
Sbjct: 328 REAMPDAQISTDIIVGFPGETEEDFQQTLRVVEEARFSSAFTFIYSPRPGTPAAAM-EQV 386

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK----HGKEKGKLVGRSPWLQSV 438
             +V  +RL  L            +  VG+ +EV+I         E  +  GR      V
Sbjct: 387 PYDVALDRLERLLAVQERITEEILEKFVGRDVEVMITGVTGKKDAETHRYTGREKTGVLV 446

Query: 439 VLNSKN----HNIGDIIKVRITDVKISTLYGEL 467
            +          IGD +   +T      L  + 
Sbjct: 447 HVGVPEGHDAPQIGDFVTATVTHAGRHNLIADP 479


>gi|189502025|ref|YP_001957742.1| hypothetical protein Aasi_0614 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|229890438|sp|B3ES11|MIAB_AMOA5 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|189497466|gb|ACE06013.1| hypothetical protein Aasi_0614 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 486

 Score =  415 bits (1068), Expect = e-114,   Method: Composition-based stats.
 Identities = 160/466 (34%), Positives = 254/466 (54%), Gaps = 20/466 (4%)

Query: 15  SQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIRE 74
            + +    + +  +V+SYGCQMN+ DS  +  +    G+E  ++ + AD+I +NTC IR+
Sbjct: 25  EEDITSPTITRNLYVESYGCQMNIADSEVVVSILRPHGFEITDTYEKADVIFINTCAIRD 84

Query: 75  KAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYY 134
           KA + V   L +   LK    +   DL++ V GC+A+   + +L    +V++V GP  Y 
Sbjct: 85  KAEQTVRKRLSQFNQLK----RRNPDLVIGVLGCMAERLKQTLLEEEKLVDLVAGPDAYR 140

Query: 135 RLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCV 194
            LP LL     G + ++T  S E+ +  +S +        GV+AF++I  GCD  C+FCV
Sbjct: 141 DLPRLLATVDSGHKAINTFLSREETYADISPIRLN---SNGVSAFISIMRGCDNMCSFCV 197

Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK---------- 244
           VP+TRG E SR    +V EA +L + G  E+TLLGQNV++++      +K          
Sbjct: 198 VPFTRGRERSRDPYSIVKEATELFEQGYREVTLLGQNVDSYKWSPNTDKKEQPTTPQEGV 257

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304
             F+ LL  +++I   +R+R++TSHP+D++D ++      D +  Y+HLPVQSGS R+LK
Sbjct: 258 VNFAQLLAMVAQIHPDLRIRFSTSHPKDITDQVLYTIKAYDNICKYIHLPVQSGSSRVLK 317

Query: 305 SMNRRHTAYEYRQIIDRIRSVR-PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
            MNR +    Y Q I+ IR +   D  ISSD I GF  ET++D + T+ L++ I Y  ++
Sbjct: 318 LMNRTYDRAWYLQKIEDIRRIVGEDCGISSDMIAGFCTETEEDHQDTLSLMEHIKYEFSY 377

Query: 364 SFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422
            F YS R GT  +    + V   VK  RL  +  K R+     N   +G++ +VL+E   
Sbjct: 378 MFYYSERPGTLAARKYADDVPLAVKKRRLQEIIDKQRQHSFEKNLKDIGKVYQVLVEGPS 437

Query: 423 KEKG-KLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
           K+   +  GR+   + VV  + +   G  + V IT+    TL GE+
Sbjct: 438 KKSDIEWQGRNSANKVVVFPNVDCKKGTYVDVLITNCTTGTLLGEI 483


>gi|255530165|ref|YP_003090537.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Pedobacter
           heparinus DSM 2366]
 gi|255343149|gb|ACU02475.1| RNA modification enzyme, MiaB family [Pedobacter heparinus DSM
           2366]
          Length = 485

 Score =  415 bits (1068), Expect = e-114,   Method: Composition-based stats.
 Identities = 162/456 (35%), Positives = 254/456 (55%), Gaps = 18/456 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ +++SYGCQMN  DS  +  +   QG+E      +AD++ +NTC IRE A ++V + L
Sbjct: 31  RKLYIESYGCQMNFADSEIVASILLDQGFETTGDYKEADVVFINTCSIRENAEQRVRNRL 90

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            +      +  +    L+V V GC+A+    + L    +V+VVVGP  Y  LP+LL    
Sbjct: 91  SQF----GAEKRRNPKLIVGVLGCMAERLKSKFLEEEKLVDVVVGPDAYRELPQLLNEVE 146

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G + ++   S E+ +  +S V        G+TAF++I  GCD  C+FCVVP+TRG E S
Sbjct: 147 SGHKAINVLLSREETYADISPVRLN---GNGITAFISIMRGCDNMCSFCVVPFTRGRERS 203

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT--------FSDLLYSLSE 256
           R    ++ EA+ L D G  E+TLLGQNV++++ KG   ++          F+ LL  ++ 
Sbjct: 204 RDPHSILAEAQDLFDRGYKEVTLLGQNVDSYKWKGAATDENREAQEIEVNFAQLLEKVAL 263

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           I   +R+R++TSHP+D++D ++      + +  Y+HLPVQSGS R+L+ MNR +T   Y 
Sbjct: 264 ISPELRVRFSTSHPKDITDEVLYTIAKYENICNYIHLPVQSGSTRVLELMNRTYTREWYI 323

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
             ID IR + PD AISSD I GF  ET+++ + T+ ++D +GY  AF+F YS R GT  +
Sbjct: 324 NRIDAIRQIIPDCAISSDIIAGFCTETEEEHQETLSIMDYVGYDFAFTFSYSERPGTLAA 383

Query: 377 -NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPW 434
             + + V E VK  RL  +  K +E  +      VG+ +++L+E   K+  +   GR+  
Sbjct: 384 RKLEDDVPEEVKKRRLAEILAKQQETSLFRLQQFVGKTVKILVEGTSKKSDRDFCGRNDQ 443

Query: 435 LQSVVLNSKNH-NIGDIIKVRITDVKISTLYGELVV 469
              VV  +      G  + V I     +TL G +VV
Sbjct: 444 NAMVVFPATAGIKAGQYVNVHIDRCTSATLLGTVVV 479


>gi|225567940|ref|ZP_03776965.1| hypothetical protein CLOHYLEM_04013 [Clostridium hylemonae DSM
           15053]
 gi|225163228|gb|EEG75847.1| hypothetical protein CLOHYLEM_04013 [Clostridium hylemonae DSM
           15053]
          Length = 477

 Score =  415 bits (1068), Expect = e-114,   Method: Composition-based stats.
 Identities = 161/457 (35%), Positives = 245/457 (53%), Gaps = 16/457 (3%)

Query: 14  VSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIR 73
           V++   +   P  F V ++GCQMN  DS ++  +    GYE     D+AD ++ NTC +R
Sbjct: 30  VTEKAREIARPLTFCVTTFGCQMNARDSEKLRGILERIGYEEAA-EDEADFVIYNTCTVR 88

Query: 74  EKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQ 131
           E A  +VY  LG+++  K+        +++ + GC+ Q     E++ +    V++V G  
Sbjct: 89  ENANTRVYGRLGQLKPRKSR----NPHMMIGLCGCMMQEPEVVEKLKKSYRFVDLVFGTH 144

Query: 132 TYYRLPELL-ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190
             Y+  EL+  R   G  V+D     +   E L        RK    + + I  GC+ FC
Sbjct: 145 NIYKFAELIVSRFESGGMVIDIWKDTDKIVEDLP-----NERKYSFKSGVNIMFGCNNFC 199

Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDL 250
           ++C+VPY RG E SR+   ++ E   L+++GV E+ LLGQNVN+  GK LD    TF+ L
Sbjct: 200 SYCIVPYVRGRERSRAPEAIIREIEHLVEDGVTEVMLLGQNVNS-YGKTLDT-PVTFAAL 257

Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
           L  + +I+GL R+R+ TSHP+D+SD LI+  G    +  +LHLPVQSGS  ILK MNR +
Sbjct: 258 LKEIEKIEGLERIRFMTSHPKDLSDELIEVMGSSHKICRHLHLPVQSGSTDILKKMNRHY 317

Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370
           T  +Y +++ +IR   P I++++D IVGFPGET++DF+ T+D+V ++ Y  AF+F YS R
Sbjct: 318 TKEQYLELVRKIREAVPGISLTTDIIVGFPGETEEDFQETLDVVRRVRYDSAFTFIYSKR 377

Query: 371 LGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV- 429
            GTP + M EQV   V  +R   L  +++           G +   L+E        LV 
Sbjct: 378 TGTPAAVMEEQVPGEVVKDRFDRLLGEVQSIAREVCSVHEGSVQRALVESVSDHDSTLVT 437

Query: 430 GRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGE 466
           GR      V        IG    V +T+ K     G+
Sbjct: 438 GRLGNNLLVHFPGSPDLIGTYADVELTECKGFYYIGK 474


>gi|167745633|ref|ZP_02417760.1| hypothetical protein ANACAC_00325 [Anaerostipes caccae DSM 14662]
 gi|167654945|gb|EDR99074.1| hypothetical protein ANACAC_00325 [Anaerostipes caccae DSM 14662]
          Length = 470

 Score =  415 bits (1068), Expect = e-114,   Method: Composition-based stats.
 Identities = 163/449 (36%), Positives = 254/449 (56%), Gaps = 16/449 (3%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P    + ++GCQMN  DS ++  +  + GY + ++ + ADL++ NTC +RE A  K+Y  
Sbjct: 32  PLTCHITTFGCQMNEKDSEKLLGVLETIGYRQTDT-EYADLVLFNTCTVRENANTKLYGH 90

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLE 141
           LG ++  K        ++++ + GC+ Q E   E+I +  P V+++ G    ++L ELL+
Sbjct: 91  LGHVKKAKEQ----NPEMIIGLCGCMMQEEQVVEKIRKSYPFVDLIFGTHNIFKLAELLK 146

Query: 142 -RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
            RA  G  +VD     +   E L       +RK      + I  GC+ FC++C+VPY RG
Sbjct: 147 ARADSGGMIVDIWKDTDQIVEDLP-----SDRKFSFKCGVNIMFGCNNFCSYCIVPYVRG 201

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E SR    ++ E   L+  GV E+ LLGQNVN+  GK LD E  +F+ LL  + +I+GL
Sbjct: 202 RERSRKPEDIIREIEGLVQEGVREVMLLGQNVNS-YGKNLD-EPVSFAQLLQKIEQIEGL 259

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+ T HP+D+SD LI+       +  ++HLPVQSGS RILK MNR +T   Y  + +
Sbjct: 260 ARIRFMTPHPKDLSDELIEVMASSKKICRHMHLPVQSGSSRILKKMNRHYTKESYLALAE 319

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           +I+   P IA+++D IVGFPGET++DF  T+D+V K+ +  A++F YS R GTP ++M +
Sbjct: 320 KIKEKIPGIAMTTDIIVGFPGETEEDFEETLDVVRKVKFDSAYTFVYSKRTGTPAASMED 379

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVV 439
           QV+  V  +R   L + ++E         +G+  EVL+E+    E G + GR      V 
Sbjct: 380 QVEPEVVKKRFSRLLEVIKESSKDNRKDGIGKEEEVLVEEKNTHEDGMVTGRLSNNILVH 439

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG +++V+IT+ K     GE V
Sbjct: 440 FKGDESLIGQLVRVKITEEKGFYYMGEQV 468


>gi|281411880|ref|YP_003345959.1| RNA modification enzyme, MiaB family [Thermotoga naphthophila
           RKU-10]
 gi|281372983|gb|ADA66545.1| RNA modification enzyme, MiaB family [Thermotoga naphthophila
           RKU-10]
          Length = 443

 Score =  415 bits (1068), Expect = e-114,   Method: Composition-based stats.
 Identities = 166/444 (37%), Positives = 256/444 (57%), Gaps = 16/444 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           RF++K++GCQMN  DS  M  +   +G+   ++ ++AD++++NTC +R K+ EK YS LG
Sbjct: 2   RFYIKTFGCQMNENDSETMAGLLMKEGFTPASAPEEADVVIINTCAVRRKSEEKAYSELG 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           ++  +K  R      L+V VAGCVA+ E E++L R    + V+G +   ++ E ++RA  
Sbjct: 62  QMLKIKRKRK-----LVVGVAGCVAEKEREKLLER--GADFVLGTRAVLKVTEAVKRALQ 114

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G++V   +  +++    LS +     R     A++TI  GCD+FCT+C+VPYTRG E SR
Sbjct: 115 GEKVALFEDHLDEYTHDLSRI-----RSSKHHAWVTIIFGCDRFCTYCIVPYTRGREKSR 169

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            +  +++E R+L   G  E+T LGQNV+A  GK L  +  + + LL   S+I+G+ R+ +
Sbjct: 170 PMEDILEEVRELAKQGYREVTFLGQNVDA-YGKDLK-DGSSLAKLLEEASKIEGIERIWF 227

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
            TS+P D SD LI+       +   +HLPVQSGS+RILK MNR +T  EY  +++RIRS 
Sbjct: 228 LTSYPTDFSDELIEVIARNPKVAKSVHLPVQSGSNRILKLMNRSYTKEEYLALLERIRSK 287

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN-MLEQVDE 384
            PD+AISSD IVGFP ET++DF  T+DLV+K  + +     YSPR GT       ++V  
Sbjct: 288 VPDVAISSDIIVGFPTETEEDFMETIDLVEKAQFERLNLAIYSPRKGTVAWKHYKDEVPY 347

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
             K  R+  L    +      N+   G+ + V++E   K  G   GR    + +    + 
Sbjct: 348 EEKVRRMQFLMNLQKRINRKLNERYKGKTVRVIVEAQAK-NGLFYGRDIRNKIIAFEGEE 406

Query: 445 HNIGDIIKVRITDVKISTLYGELV 468
             IG    V+I  +    LYG++V
Sbjct: 407 WMIGRFADVKIEKITAGPLYGKVV 430


>gi|78185107|ref|YP_377542.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Synechococcus
           sp. CC9902]
 gi|123743500|sp|Q3AV90|MIAB_SYNS9 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|78169401|gb|ABB26498.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Synechococcus sp. CC9902]
          Length = 472

 Score =  415 bits (1067), Expect = e-114,   Method: Composition-based stats.
 Identities = 177/456 (38%), Positives = 263/456 (57%), Gaps = 23/456 (5%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + +++ ++GCQMN  DS RM  +  S GY    +  DADL++ NTC IR+ A +KVYS+L
Sbjct: 22  RSYWITTFGCQMNKADSERMAGILESMGYCEATAELDADLVLYNTCTIRDNAEQKVYSYL 81

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR    K    ++  +L +VVAGCVAQ EGE +LRR P +++V+GPQ   RL  LL++  
Sbjct: 82  GRQAQRK----RDNPNLTLVVAGCVAQQEGESLLRRVPELDLVMGPQHANRLETLLQQVD 137

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G++VV T+       E ++       R   +  ++ +  GC++ CT+CVVP  RG E S
Sbjct: 138 SGQQVVATEE--HHILEDITTAR----RDSAICGWVNVIYGCNERCTYCVVPSVRGQEQS 191

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG------EKCTFSDLLYSLSEIK 258
           R    +  E   L   G  EITLLGQN++A  G+ L G       + T +DLL+ + +++
Sbjct: 192 RRPEAIRLEMEGLAAQGFKEITLLGQNIDA-YGRDLPGITAEGRREHTLTDLLHHVHDVE 250

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           G+ RLR+ TSHPR  ++ LI A  DL  +  + H+P QSG + +LKSM R +T   YR+I
Sbjct: 251 GIERLRFATSHPRYFTERLIDACADLSKVCEHFHIPFQSGDNALLKSMARGYTVERYRRI 310

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           IDRIR   PD +IS+D IVGFPGETD  +R T+DL+D+I + Q  +  YSPR  TP +  
Sbjct: 311 IDRIRDRMPDASISADVIVGFPGETDAQYRRTLDLIDEIAFDQVNTAAYSPRPNTPAATW 370

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQS 437
             Q+ E+VK ERL  +   +       N    G+  EVL E    K+  +L+GR+   + 
Sbjct: 371 DNQLPESVKVERLKEINALVERNARERNIRYQGRTEEVLAEGINPKDPEQLMGRTRTNRL 430

Query: 438 VVLNSKN-----HNIGDIIKVRITDVKISTLYGELV 468
              ++ +     +  GD++ VRI  V+  +L G  +
Sbjct: 431 TFFSATSPDGHLYQPGDLVNVRIDAVRSFSLSGTPL 466


>gi|167758192|ref|ZP_02430319.1| hypothetical protein CLOSCI_00530 [Clostridium scindens ATCC 35704]
 gi|167664089|gb|EDS08219.1| hypothetical protein CLOSCI_00530 [Clostridium scindens ATCC 35704]
          Length = 492

 Score =  415 bits (1067), Expect = e-114,   Method: Composition-based stats.
 Identities = 157/442 (35%), Positives = 254/442 (57%), Gaps = 14/442 (3%)

Query: 30  KSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRN 89
           +++GCQMN  DS ++  +    GYE     D AD ++ NTC +RE A  +VY  LG+++ 
Sbjct: 62  RTFGCQMNARDSEKLRGILEKIGYEEAP-EDVADFVIYNTCTVRENANTRVYGRLGQLKP 120

Query: 90  LKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147
           LK    K+   +++ + GC+ Q     E++ +    V+++ G    ++  EL+ +    +
Sbjct: 121 LK----KKNPHMMIGLCGCMMQEPEVVEKLRKSYRFVDIIFGTHNIFKFAELIVQRLESQ 176

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
            +V   +   DK     + D    RK    + + I  GC+ FC++C+VPY RG E SR  
Sbjct: 177 EMVIDIWKDTDKI----VEDLPNERKYFFKSGVNIMFGCNNFCSYCIVPYVRGRERSRDP 232

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
             ++ E  +L+ +GV E+ LLGQNVN+  GK L+ E  +F+ LL  + +I+GL R+R+ T
Sbjct: 233 KAIIREIERLVADGVVEVMLLGQNVNS-YGKNLE-EPMSFARLLTEIEKIEGLERIRFMT 290

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
           SHP+D+SD LI+  G+   +  +LHLP+QSGS RIL+ MNRR+T  +Y  ++D+IR   P
Sbjct: 291 SHPKDLSDELIEVMGNSKKICKHLHLPIQSGSSRILEKMNRRYTKEQYLTLVDKIRKAVP 350

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
           DI++++D IVGFPGET++DF+ T+D+V K+ Y  AF+F YS R GTP + M +Q+ E+V 
Sbjct: 351 DISLTTDIIVGFPGETEEDFQETLDVVRKVRYDSAFTFIYSKRTGTPAAAMEDQIPEDVV 410

Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GRSPWLQSVVLNSKNHN 446
            +R   L ++++           G +   L+E   +    +V GR      V     +  
Sbjct: 411 KDRFDRLLREVQAIAAQVCSVHEGCVQTALVEAKSEHDDSMVTGRLSNNLLVHFKGSSEL 470

Query: 447 IGDIIKVRITDVKISTLYGELV 468
           IG ++ VR+++ K     GE V
Sbjct: 471 IGQLVDVRLSECKGFYYLGEQV 492


>gi|32129446|sp|Q96SZ6|CK5P1_HUMAN RecName: Full=CDK5 regulatory subunit-associated protein 1;
           AltName: Full=CDK5 activator-binding protein C42
 gi|56205140|emb|CAI19393.1| CDK5 regulatory subunit associated protein 1 [Homo sapiens]
 gi|119596731|gb|EAW76325.1| CDK5 regulatory subunit associated protein 1, isoform CRA_h [Homo
           sapiens]
          Length = 601

 Score =  415 bits (1067), Expect = e-114,   Method: Composition-based stats.
 Identities = 155/502 (30%), Positives = 257/502 (51%), Gaps = 53/502 (10%)

Query: 17  IVDQCI-VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREK 75
           ++D+ +   ++ ++++YGCQMNV D+     +    GY R +++ +AD+I+L TC IREK
Sbjct: 91  MMDELLGRQRKVYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCSIREK 150

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135
           A + +++ L +++ LK  R +    L + + GC+A+   EEIL R  +V+++ GP  Y  
Sbjct: 151 AEQTIWNRLHQLKALKTRRPRSRVPLRIGILGCMAERLKEEILNREKMVDILAGPDAYRD 210

Query: 136 LPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
           LP LL  A  G++  +   S+++ +  +  V          +AF++I  GCD  C++C+V
Sbjct: 211 LPRLLAVAESGQQAANVLLSLDETYADVMPVQTS---ASATSAFVSIMRGCDNMCSYCIV 267

Query: 196 PYTRGIEISRSLSQVVDEARKLID--------------NGVCEITLLGQNVNAWRG---- 237
           P+TRG E SR ++ +++E +KL +               G+ E+TLLGQNVN++R     
Sbjct: 268 PFTRGRERSRPIASILEEVKKLSEQVFLPPRPPKVLGLQGLKEVTLLGQNVNSFRDNSEV 327

Query: 238 -----------KGLDGEKCT------FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKA 280
                      +G      T      F+ LL  +S +   +R+R+T+ HP+D  D +++ 
Sbjct: 328 QFNSAVPTNLSRGFTTNYKTKQGGLRFAHLLDQVSRVDPEMRIRFTSPHPKDFPDEVLQL 387

Query: 281 HGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFP 340
             + D +   +HLP QSGS R+L++M R ++   Y +++  IR   P +++SSDFI GF 
Sbjct: 388 IHERDNICKQIHLPAQSGSSRVLEAMRRGYSREAYVELVHHIRESIPGVSLSSDFIAGFC 447

Query: 341 GETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLR 399
           GET++D   T+ L+ ++ Y   F F YS R  T     + + V E VK  RL  L    R
Sbjct: 448 GETEEDHVQTVSLLREVQYNMGFLFAYSMRQKTRAYHRLKDDVPEEVKLRRLEELITIFR 507

Query: 400 EQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVLNSKN------------HN 446
           E+    N   VG    VL+E   K     L GR+     V+                   
Sbjct: 508 EEATKANQTSVGCTQLVLVEGLSKRSATDLCGRNDGNLKVIFPDAEMEDVNNPGLRVRAQ 567

Query: 447 IGDIIKVRITDVKISTLYGELV 468
            GD + V+IT     TL G ++
Sbjct: 568 PGDYVLVKITSASSQTLRGHVL 589


>gi|302335738|ref|YP_003800945.1| RNA modification enzyme, MiaB family [Olsenella uli DSM 7084]
 gi|301319578|gb|ADK68065.1| RNA modification enzyme, MiaB family [Olsenella uli DSM 7084]
          Length = 455

 Score =  415 bits (1067), Expect = e-114,   Method: Composition-based stats.
 Identities = 176/453 (38%), Positives = 258/453 (56%), Gaps = 16/453 (3%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           +V + +FV+++GCQMN++DS R+  +    G   V   D+AD++V  TC +REKA     
Sbjct: 7   LVGKTYFVRTFGCQMNLHDSERVAGLLDDCGCVAVQGPDEADIVVFMTCSVREKAD---T 63

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL- 140
              G   NL        G  +V V GC+AQ +G+ +    P V+VV G      +P LL 
Sbjct: 64  HLFGEASNLVRLPRPPSGRRVVAVGGCIAQRDGDRLREHIPNVDVVFGTSALASVPALLV 123

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           E    G   V  D S E    R    +   +R++   A++ I  GCD FCT+C+VP+ RG
Sbjct: 124 EALEEGGGRVHVDTSEE---GRGFSAELPSHREQDFHAWVPIMTGCDNFCTYCIVPHVRG 180

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E SR+  +VVDE  +L+ +GV EITLLGQNVN+  G+ L GE   F++LL ++ E  G+
Sbjct: 181 RERSRAFERVVDECARLVADGVREITLLGQNVNS-YGRDLYGEP-RFAELLQAVGE-TGV 237

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+T+S+P+D+S   I A      +MP+LHL VQSGS RILK+MNR +T   Y  +I 
Sbjct: 238 ERIRFTSSNPKDLSAETIAAMAGTPNVMPHLHLAVQSGSTRILKAMNRSYTREGYLDVIR 297

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
            I++  P IA+S+D IVGFPGET++DF  T+ LV+++G+A A++F YS R GTP + + +
Sbjct: 298 DIKAAIPGIALSTDIIVGFPGETEEDFLDTLSLVEEVGFASAYTFIYSRRPGTPAARITD 357

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVV 439
                V   R   L   +       N    G  +E LIE   K+  + LVG SP  Q+V+
Sbjct: 358 DTPREVIQGRFDRLASLVERLAHEANVPYQGSRVEALIEGASKKDDRVLVGHSPHNQTVL 417

Query: 440 LN-SKNHNIGDII----KVRITDVKISTLYGEL 467
           L+  +  + GD +     V +T+ +   L GEL
Sbjct: 418 LDLPEGSHAGDFVGTLCDVHVTEARTWYLRGEL 450


>gi|39998295|ref|NP_954246.1| MiaB-like tRNA modifying enzyme YliG [Geobacter sulfurreducens PCA]
 gi|81701038|sp|Q747R0|RIMO_GEOSL RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|39985241|gb|AAR36596.1| MiaB-like tRNA modifying enzyme YliG [Geobacter sulfurreducens PCA]
 gi|298507231|gb|ADI85954.1| ribosomal protein S12 methylthiotransferase [Geobacter
           sulfurreducens KN400]
          Length = 447

 Score =  415 bits (1067), Expect = e-114,   Method: Composition-based stats.
 Identities = 147/456 (32%), Positives = 235/456 (51%), Gaps = 23/456 (5%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
             ++  + S GC  N+ D+  M        YE      +AD+I++NTC   ++A ++   
Sbjct: 4   AKEKVSMVSLGCPKNLVDAEVMLGRLAKDRYEITTDEREADIIIVNTCSFIKEAKQESID 63

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE- 141
            +  + + K     +G   L++V GC+ Q   EE+ R  P V++ VG   Y R+ E++E 
Sbjct: 64  TILDLADRKQ----DGRCRLLIVTGCLPQRYQEELARELPEVDIFVGTGDYPRIAEIIEE 119

Query: 142 ---RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
              R    + + D ++  ++   RL       N     TA+L I EGC   C++CV+P  
Sbjct: 120 KSSRPEQLRYIGDPNFVFDESLTRL-------NSSPAYTAYLKIAEGCSNCCSYCVIPSL 172

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258
           RG   SR L  V+ EAR L+  G  EI L+ Q++    G+ L G   +   L+  L+ I 
Sbjct: 173 RGAFRSRPLESVLAEARSLVAGGAREINLIAQDITT-YGRDLPGAP-SLETLIRELAAID 230

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           GL  +R   ++P  ++D LI+   +   +  YL LP+Q  SD ILK MNRR T  + R++
Sbjct: 231 GLAWIRLLYAYPDGITDGLIQTIKNEPKVCKYLDLPIQHISDPILKRMNRRSTEPQIREL 290

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           + R+R   PDIA+ +  IVGFPGET++DFR  +  V++  + +   F YS   GTP + M
Sbjct: 291 VARLREEIPDIALRTSLIVGFPGETEEDFRTLLHFVEEAQFDRLGVFCYSREEGTPAAEM 350

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-----KGKLVGRSP 433
            +QV E VK ER   L K         N   +    +V++E + +E     KG+   ++P
Sbjct: 351 PDQVSERVKRERYKKLMKAQARVSFKRNRRLIDTEEQVIVEGYSEETELLLKGRSSRQAP 410

Query: 434 WLQS-VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            +   V + + N N+GDI+++RITD     L GE++
Sbjct: 411 DIDGQVYITAGNANVGDIVRLRITDSSDYDLIGEII 446


>gi|32475869|ref|NP_868863.1| MiaB protein- tRNA-thiotransferase [Rhodopirellula baltica SH 1]
 gi|81659862|sp|Q7ULM9|MIAB_RHOBA RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|32446412|emb|CAD76240.1| probable MiaB protein-putative tRNA-thiotransferase [Rhodopirellula
           baltica SH 1]
          Length = 479

 Score =  415 bits (1067), Expect = e-114,   Method: Composition-based stats.
 Identities = 173/464 (37%), Positives = 263/464 (56%), Gaps = 24/464 (5%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + +  ++K+ GCQMNV DS  +       GY  V++  +ADL++ NTC IRE+A EK YS
Sbjct: 4   MTKTVYIKTVGCQMNVLDSEMVIADLKRHGYTVVDTPGEADLLLYNTCSIREQAEEKTYS 63

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            LG+++  K        +  + V GC+AQ + E I RR+P V++VVGP   + +P++L +
Sbjct: 64  ALGKLKETKARH----PEKTIGVMGCMAQKDQETIFRRAPFVDMVVGPGQLHAIPDMLTK 119

Query: 143 ARFGK-RVVDTDYSVED--------KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC 193
              G+ R +      +D          E    +     R     A+L IQ GCDKFCT+C
Sbjct: 120 VTSGEGRQMAVSLGRKDGKQTVVARSHETFDPLRDPTMRPTPFQAYLRIQIGCDKFCTYC 179

Query: 194 VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS 253
           VVP TRG E  RS  ++V EAR L + G  EITLLGQ VN++R +G DGE    + LL  
Sbjct: 180 VVPNTRGPEQGRSPEEIVSEARVLAEQGALEITLLGQTVNSYRHRGPDGE-TDMAGLLER 238

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
           L +I GL R+++ T++P+DM+  L++   DL  + PYLH+P QSGSD +LK M R +T  
Sbjct: 239 LHDIDGLKRIKFVTNYPKDMTARLLETIRDLPKVSPYLHVPAQSGSDAVLKRMKRGYTIA 298

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
           +Y ++ +RI +V P+ ++SSDFIVGF GETD+DF+ ++ L+++  +  +F F+YS R GT
Sbjct: 299 DYMEMFERIETVLPEASVSSDFIVGFCGETDEDFQKSVKLIERCRFKNSFIFQYSVREGT 358

Query: 374 P-GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG------ 426
              +N+++ V   VKA R   L           N   +G  +EVL+E   K+        
Sbjct: 359 KAAANLIDDVPREVKAARNNELLAVQDRISKEDNQKLIGDTVEVLVEGPSKKADKSDLDA 418

Query: 427 ---KLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
              ++ GR+   + VV +      G ++ ++I DV   TL G +
Sbjct: 419 PIVQMTGRTICDRIVVFDGNRRQAGQLMDIQIDDVSSHTLIGRV 462


>gi|291287753|ref|YP_003504569.1| RNA modification enzyme, MiaB family [Denitrovibrio acetiphilus DSM
           12809]
 gi|290884913|gb|ADD68613.1| RNA modification enzyme, MiaB family [Denitrovibrio acetiphilus DSM
           12809]
          Length = 435

 Score =  415 bits (1067), Expect = e-114,   Method: Composition-based stats.
 Identities = 167/446 (37%), Positives = 270/446 (60%), Gaps = 14/446 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +++F+ + GCQMN YDSLR+  +F   G+     M++ D +++NTC +REK   K  S +
Sbjct: 2   RKYFIHTMGCQMNEYDSLRIAAVFDKIGFTEAEEMEEGDYLIVNTCSVREKPQHKAESAI 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR R +K    +   ++ +   GCVAQ EGE +L+ +  ++ VVG    +RL E++    
Sbjct: 62  GRFRQIK----RRRPEVKIGFCGCVAQQEGENLLKTNKDIDFVVGTDGLHRLEEVVAHVE 117

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G+R+ DT  +         +    +NR+  V++F+TI +GC+ FC++C+VPY RG E S
Sbjct: 118 AGERLSDTQVN------EGGLEIDIFNREVSVSSFVTIMKGCNNFCSYCIVPYVRGREKS 171

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R  S+++DE + L D G  EITLLGQNVN+  G  L  +  +F +LL  +S+++G+ R+R
Sbjct: 172 REQSEIIDEIKYLADKGAREITLLGQNVNS-YGTAL-TDPVSFPELLDKVSDVEGIKRIR 229

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           + TSHP+D S+ LI      D +  YLHLP+QSGS+ +L+ MNR++T   Y++ + R + 
Sbjct: 230 FVTSHPKDFSNELIDVMRGNDKICEYLHLPLQSGSNAVLQKMNRKYTYDHYKERVLRAKE 289

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           + PD+A+SSDFIVGFPGET++DF++TM  +++I Y   ++F YS R GT   +  + V  
Sbjct: 290 MIPDLALSSDFIVGFPGETEEDFQSTMKALEEIRYDMIYAFNYSTRPGTKAESFNDDVPL 349

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNSK 443
            VK  RL  L    +      + A    ++EV++E   K+  G+  GR+   + V  +S+
Sbjct: 350 EVKKMRLAKLLDAQKRIIAENSAAYQDLVVEVMVEGESKKGAGQYSGRNRQNRVVNFSSE 409

Query: 444 N-HNIGDIIKVRITDVKISTLYGELV 468
              + GD + V+IT+ + ++L GE V
Sbjct: 410 TILSSGDFVNVKITEPRPNSLLGERV 435


>gi|154497029|ref|ZP_02035725.1| hypothetical protein BACCAP_01322 [Bacteroides capillosus ATCC
           29799]
 gi|150273428|gb|EDN00556.1| hypothetical protein BACCAP_01322 [Bacteroides capillosus ATCC
           29799]
          Length = 471

 Score =  415 bits (1066), Expect = e-114,   Method: Composition-based stats.
 Identities = 153/444 (34%), Positives = 235/444 (52%), Gaps = 15/444 (3%)

Query: 28  FVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRI 87
           FV +YGCQ N  DS R+       GY       +A +IV+NTC IRE A ++V   +G +
Sbjct: 37  FVDTYGCQQNEADSERIRGYLKEMGYGFTQDEKEAAVIVINTCAIREHAEQRVLGNVGAL 96

Query: 88  RNLKNSRIKEGGDLLVVVAGCVAQ--AEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            + K        + ++ + GC+ Q      +I      V++V GP   +R PE L R   
Sbjct: 97  VHTKRK----NPNQIICLCGCMVQEPHNAAKIRTSYRHVDMVFGPHALWRFPEFLYRILT 152

Query: 146 GK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            + R+ +T        E + +V     R+ GV A+++I  GC+ FC++C+VPY RG E S
Sbjct: 153 RRGRIFETADDPGSIAEGIPVV-----RQNGVKAWVSIMYGCNNFCSYCIVPYVRGRERS 207

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R    ++ E  +L   G  EITLLGQNVN+  GK L  E   F+DLL  ++ + G   +R
Sbjct: 208 RDPEGILAEVEELAKAGYKEITLLGQNVNS-YGKDLP-EPMDFADLLRKVNAVPGDFLIR 265

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           + TSHP+D ++ L  A  + + + P +HLPVQ+G++R+LK+MNR +T   Y + + ++R 
Sbjct: 266 FMTSHPKDATEKLFDAMAECEKVAPVIHLPVQAGNNRVLKAMNRVYTREIYLEKVRQLRQ 325

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             PDI ++SD IVGFPGET ++F  TM L+ ++ Y   F+F YSPR GTP + M + + +
Sbjct: 326 RIPDIVLTSDIIVGFPGETTEEFEDTMSLLREVEYDALFTFIYSPREGTPAAKMPDPMSK 385

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNSK 443
             K+     L     E  +  + A  G+ I  L++    +    L  R+P  + V     
Sbjct: 386 EEKSANFQRLVDLQNEISLKKHQAYEGKTIRCLVDGRSDDPRNNLTARTPGGRLVHFTGD 445

Query: 444 NHNIGDIIKVRITDVKISTLYGEL 467
              IG    + IT      L+GEL
Sbjct: 446 EKLIGTYQNLTITGCSTWALFGEL 469


>gi|317472764|ref|ZP_07932076.1| MiaB family RNA modification enzyme [Anaerostipes sp. 3_2_56FAA]
 gi|316899756|gb|EFV21758.1| MiaB family RNA modification enzyme [Anaerostipes sp. 3_2_56FAA]
          Length = 470

 Score =  415 bits (1066), Expect = e-114,   Method: Composition-based stats.
 Identities = 163/449 (36%), Positives = 253/449 (56%), Gaps = 16/449 (3%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P    + ++GCQMN  DS ++  +  + GY + ++ + ADL++ NTC +RE A  K+Y  
Sbjct: 32  PLTCHITTFGCQMNEKDSEKLLGVLETIGYRQTDT-EYADLVLFNTCTVRENANTKLYGH 90

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLE 141
           LG ++  K        ++++ + GC+ Q E   E+I +  P V+++ G    ++L ELL+
Sbjct: 91  LGHVKKAKEQ----NPEMIIGLCGCMMQEEQVVEKIRKSYPFVDLIFGTHNIFKLAELLK 146

Query: 142 -RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
            RA  G  +VD     +   E L       +RK      + I  GC+ FC++C+VPY RG
Sbjct: 147 ARADSGGMIVDIWKDTDQIVEDLP-----SDRKFSFKCGVNIMFGCNNFCSYCIVPYVRG 201

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E SR    ++ E   L+  GV E+ LLGQNVN+  GK LD E  +F+ LL  + +I+GL
Sbjct: 202 RERSRKPEDIIREIEGLVQEGVREVMLLGQNVNS-YGKNLD-EPVSFAQLLQKIEQIEGL 259

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+ T HP+D+SD LI+       +  ++HLPVQSGS RILK MNR +T   Y  + +
Sbjct: 260 ARIRFMTPHPKDLSDELIEVMASSKKICRHMHLPVQSGSSRILKKMNRHYTKESYLALAE 319

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           +I+   P IA+++D IVGFPGET++DF  T+D+V K+ +  A++F YS R GTP + M +
Sbjct: 320 KIKEKIPGIAMTTDIIVGFPGETEEDFEETLDVVRKVKFDSAYTFVYSKRTGTPAAAMED 379

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVV 439
           QV+  V  +R   L + ++E         +G+  EVL+E+    E G + GR      V 
Sbjct: 380 QVEPEVVKKRFSRLLEVIKESSKDNRKDGIGKEEEVLVEEKNTHEDGMVTGRLSNNILVH 439

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG +++V+IT+ K     GE V
Sbjct: 440 FKGDESLIGQLVRVKITEEKGFYYMGEQV 468


>gi|227485050|ref|ZP_03915366.1| tRNA 2-methylthioadenine synthetase [Anaerococcus lactolyticus ATCC
           51172]
 gi|227236883|gb|EEI86898.1| tRNA 2-methylthioadenine synthetase [Anaerococcus lactolyticus ATCC
           51172]
          Length = 451

 Score =  415 bits (1066), Expect = e-114,   Method: Composition-based stats.
 Identities = 163/449 (36%), Positives = 256/449 (57%), Gaps = 19/449 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + + + ++GCQMN +DS R+  +    GY        AD I+ NTC +RE A  K+Y  +
Sbjct: 16  KTYNITTFGCQMNEHDSERISYILEDLGYVYEEDRKKADFILFNTCLVRENAELKLYGQV 75

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAE--GEEILRRSPIVNVVVGPQTYYRLPELLER 142
             ++ +K S      + ++ V+GC+ Q E   + I+ +   V+++ G +    L +L+ R
Sbjct: 76  SSLKKIKESH----PEKIIAVSGCMMQTEVARQVIIDKHREVDIIFGTKNINSLSDLIFR 131

Query: 143 A-RFGKRVVDTD-YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
               G+RVVD    +V+D F +       YN      A++ I  GCD FC++C+VP +RG
Sbjct: 132 YLETGERVVDISTDNVKDDFVK-------YNTPNHFQAYVNIMTGCDNFCSYCIVPESRG 184

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E SR  S +++E   L++ G  EITLLGQNVN+  G   D    TF +LL  +++I  L
Sbjct: 185 REESRRPSSIIEEVEYLVNQGYKEITLLGQNVNS-YGNKADFN-HTFPELLEKVAQIPNL 242

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            RLR+TTSHP+D+SD LIK     D +  Y HLP+QSGSD++LK MNR++T  +Y +   
Sbjct: 243 KRLRFTTSHPKDLSDELIKVIKRNDNICKYFHLPLQSGSDKVLKDMNRKYTQEKYLERAR 302

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           +++   P+IAIS+D IVG+P ET++DF  T+ +  ++GY  AF+FKYSPR  T  + +  
Sbjct: 303 KLKEEIPEIAISTDIIVGYPTETEEDFEQTLKVCKEVGYDTAFTFKYSPRPKTRAAKLTP 362

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVV 439
            +D+++   R   L   L       N   +G+ +EVL+E   K   + L GR+   + V 
Sbjct: 363 -IDDDIVQARFDKLLDLLYPIFNEKNQTYIGKTVEVLLESESKNNPEVLTGRTDDYKLVH 421

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
           + +    IG+ +KV+IT     T+ G+LV
Sbjct: 422 VKADKSLIGEFVKVKITGNTSFTISGDLV 450


>gi|226312987|ref|YP_002772881.1| hypothetical protein BBR47_34000 [Brevibacillus brevis NBRC 100599]
 gi|226095935|dbj|BAH44377.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599]
          Length = 448

 Score =  415 bits (1066), Expect = e-113,   Method: Composition-based stats.
 Identities = 142/460 (30%), Positives = 238/460 (51%), Gaps = 20/460 (4%)

Query: 17  IVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA 76
           + ++    ++  + + GC+ N+ DS  M  +   +GYE V++ ++A ++++NTC   + A
Sbjct: 1   MTEKVGTREKVAIVTLGCEKNLVDSDMMAHLIDEKGYELVDNPEEATVVIVNTCGFIDAA 60

Query: 77  AEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL 136
            E+  + +  +  LK S    G    +VVAGC+ Q   E+IL   P V+ +VG   +  +
Sbjct: 61  KEESVNKILEMGELKES----GKLKSLVVAGCLTQRYKEDILNEIPEVDGIVGTGDFMSI 116

Query: 137 PELLERARFGKRVV---DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC 193
             ++E +  GKR +   +  ++ ED  +R         ++   TA++ I EGCD  CTFC
Sbjct: 117 TGIIEESLEGKRPIFVGNPIFTYEDVVKR-------KVKQGTYTAYIKIAEGCDNACTFC 169

Query: 194 VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS 253
            +P  RG   SR++  +V+EAR L   GV E++L+ Q+     G  +   K    +LL  
Sbjct: 170 SIPLMRGGFRSRTIESIVEEARHLAAQGVVEVSLIAQDST-NYGTDIYDGKLMLPELLNR 228

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
           L+E++G+  +R   ++P   +D LI        +  Y+ +P+Q   D ILK M R     
Sbjct: 229 LAEVEGIEWIRLHYAYPGFFTDELIHTFATNPKVCKYVDMPLQHSEDHILKRMRRPGRQT 288

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
           + R ++ +IR+  PD+A+ +  IVGFPGET++DF    + V  I + +   F YS    T
Sbjct: 289 DIRALVAKIRAQVPDVALRTSLIVGFPGETEEDFERLSEFVKDIRFDRLGVFTYSNEDDT 348

Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS- 432
           P S + + VDE VK +R   L +  RE     N   VGQ+++VLIE++       VGR+ 
Sbjct: 349 PASRLPDHVDEEVKEKRANMLMEIQREVAGDRNGRFVGQVLDVLIERYEGRNDIYVGRTQ 408

Query: 433 ---PWLQSVVLNSK-NHNIGDIIKVRITDVKISTLYGELV 468
              P +   V  +     +G ++KV+IT      L GE+V
Sbjct: 409 YDAPEIDGEVFVTGFKGELGTVVKVKITHSYEYDLAGEVV 448


>gi|197303393|ref|ZP_03168432.1| hypothetical protein RUMLAC_02115 [Ruminococcus lactaris ATCC
           29176]
 gi|197297391|gb|EDY31952.1| hypothetical protein RUMLAC_02115 [Ruminococcus lactaris ATCC
           29176]
          Length = 490

 Score =  415 bits (1066), Expect = e-113,   Method: Composition-based stats.
 Identities = 158/445 (35%), Positives = 246/445 (55%), Gaps = 13/445 (2%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
            F V ++GCQMN  DS ++  +    GY      + AD ++ NTC +RE A  +VY  LG
Sbjct: 52  TFCVTTFGCQMNARDSEKLVGILEQIGYVEEPDEEKADFVIYNTCTVRENANLRVYGRLG 111

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERA 143
           ++  +K    K+   +++ + GC+ Q     E++ +    V+++ G    Y+  ELL  +
Sbjct: 112 QLGRIK----KKNPHMMIALCGCMMQEPEVVEKLKKSYRFVDLIFGTHNIYKFAELLTNS 167

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
               R+V   +   DK     + D    RK    + + I  GC+ FC++C+VPY RG E 
Sbjct: 168 MQSDRMVIDIWKDTDKI----VEDLPVERKYSFKSGVNIMFGCNNFCSYCIVPYVRGRER 223

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR    +V E  +L+ +GV E+ LLGQNVN+  GK L+    TF+ LL  + +I+GL R+
Sbjct: 224 SRDPKAIVREIERLVADGVVEVMLLGQNVNS-YGKNLE-HPMTFAQLLQEIEKIEGLERI 281

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+ TSHP+D+SD LI+       +  +LHLPVQSGS RILK MNR +T   Y +++D+I+
Sbjct: 282 RFMTSHPKDLSDELIEVMSRSKKICRHLHLPVQSGSSRILKKMNRHYTKEHYLELVDKIK 341

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              PDI++++D IVGFPGET++DFR T+D+V K+ Y  AF+F YS R GTP + M +QV 
Sbjct: 342 KAVPDISLTTDIIVGFPGETEEDFRETLDVVRKVRYDSAFTFIYSKRTGTPAAVMEDQVS 401

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSPWLQSVVLNS 442
           E    +R   L K+++           G I + L+E ++  +   + GR      V    
Sbjct: 402 EAEVKDRFDRLLKEVQTISAQRCAIHEGTIQKALVECQNEHDPSLVTGRLSNNLLVHFPG 461

Query: 443 KNHNIGDIIKVRITDVKISTLYGEL 467
               IG ++ V + + K     G++
Sbjct: 462 DPSLIGRLVDVSLDECKGFYYMGKM 486


>gi|88809161|ref|ZP_01124670.1| hypothetical protein WH7805_05696 [Synechococcus sp. WH 7805]
 gi|88787103|gb|EAR18261.1| hypothetical protein WH7805_05696 [Synechococcus sp. WH 7805]
          Length = 497

 Score =  415 bits (1066), Expect = e-113,   Method: Composition-based stats.
 Identities = 178/474 (37%), Positives = 268/474 (56%), Gaps = 27/474 (5%)

Query: 11  AHMVSQIVDQCIVPQR----FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIV 66
           A  V+      ++P R    +++ ++GCQMN  DS RM  +  S GY   +   DADL++
Sbjct: 33  ALTVTASPTTEMLPNRERGSYWITTFGCQMNKADSERMAGILESMGYREASGELDADLVL 92

Query: 67  LNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNV 126
            NTC IR+ A +KVYS+LGR    K    +   +L +VVAGCVAQ EGE +LRR P +++
Sbjct: 93  YNTCTIRDNAEQKVYSYLGRQAQRK----RTNPNLTLVVAGCVAQQEGESLLRRVPELDL 148

Query: 127 VVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGC 186
           V+GPQ   RL  LL++   G++VV T+       E ++       R   +  ++ +  GC
Sbjct: 149 VMGPQHANRLETLLQQVDSGQQVVATEE--HHILEDITTAR----RDSSICGWVNVIYGC 202

Query: 187 DKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG---- 242
           ++ CT+CVVP  RG E SR    +  E   L   G  EITLLGQN++A  G+ L G    
Sbjct: 203 NERCTYCVVPSVRGKEQSRLPDAIRLEMEGLAAQGFKEITLLGQNIDA-YGRDLPGITPE 261

Query: 243 --EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300
              + T +DLL+ +  ++GL R+R+ TSHPR  ++ LI A  DL  L  + H+P QSG +
Sbjct: 262 GRRQHTLTDLLHHVHSVEGLERIRFATSHPRYFTERLIDACADLPKLCEHFHIPFQSGDN 321

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
            +L++M R +T   YR+IIDRIR   PD ++S+D IV FPGETD  +R T+ L+++IG+ 
Sbjct: 322 DVLRAMARGYTVERYRRIIDRIRDRMPDASLSADVIVAFPGETDAQYRRTLALIEEIGFD 381

Query: 361 QAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
           Q  +  YSPR  TP +N   Q+ E+ K ERL  +   +       N+   G++ EVL E 
Sbjct: 382 QVNTAAYSPRPNTPAANWDNQLSEDTKVERLREINALVERCARERNERYSGRVEEVLAEG 441

Query: 421 HG-KEKGKLVGRSPWLQSVVL-----NSKNHNIGDIIKVRITDVKISTLYGELV 468
              K+  +L+GR+   +         N +  + GD+++VRI  V+  +L G  +
Sbjct: 442 INPKDPSQLMGRTRTNRLTFFRSENGNGRRFSAGDLVQVRIDAVRSFSLSGTPL 495


>gi|86742200|ref|YP_482600.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Frankia sp.
           CcI3]
 gi|123737135|sp|Q2J771|MIAB_FRASC RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|86569062|gb|ABD12871.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Frankia sp. CcI3]
          Length = 540

 Score =  415 bits (1066), Expect = e-113,   Method: Composition-based stats.
 Identities = 166/472 (35%), Positives = 249/472 (52%), Gaps = 40/472 (8%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + + V+++GCQMNV+DS R+  +  S GY  V+   +AD++V NTC +RE A  ++Y  L
Sbjct: 4   RSYEVRTFGCQMNVHDSERLCGLLESAGYSPVDPGGEADVVVFNTCAVRENADNRLYGNL 63

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           G++  +K    K    + + V GC+AQ +   IL R+P V+VV G    +RLP LLERAR
Sbjct: 64  GQLVPVK----KGHPGMQIAVGGCLAQKDRAAILDRAPWVDVVFGTHNLHRLPVLLERAR 119

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
                        + F           R    +A+++I  GCD  CTFC+VP  RG E  
Sbjct: 120 HNAAAQVEIAEALEVFPSSLPTR----RASHHSAWVSISVGCDNTCTFCIVPSLRGRERD 175

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R    V+ E   L+  G  EITLLGQNVN+  G+ L G+   F+ LL +   + GL R+R
Sbjct: 176 RRPGDVLAEVEALVAEGALEITLLGQNVNS-YGRSL-GDPGAFAKLLAACGRVDGLERVR 233

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +T+ HPRD +D +I+A      +   LH+P+QSGSD +L+ M R +    +  I++R+R+
Sbjct: 234 FTSPHPRDFTDDVIEAMATTSNVCHQLHMPLQSGSDTVLRRMRRSYRRDRFLGIVERVRA 293

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             PD AI++D IVGFPGET+ DF  T+D+V    ++ AF+F+YSPR GTP + M  QVD 
Sbjct: 294 AMPDAAITTDIIVGFPGETEADFADTLDVVRAARFSGAFTFQYSPRPGTPAATMDAQVDR 353

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEK---GKLVGRSPWLQSVVL 440
              A+R   L     E   + N A VG+ +EVL+ E  G++    G++ GR+   + V  
Sbjct: 354 ATVADRYTRLVALQDEISWAENRALVGRRVEVLVSEGEGRKDGATGRMSGRARDGRLVHF 413

Query: 441 NSKNH--------------------------NIGDIIKVRITDVKISTLYGE 466
            +                               GD+++  +T      L  +
Sbjct: 414 RADEAASSSTGSGPRAGGAAPAVAVAVAPTVRPGDVVETVVTRAAPHHLTAD 465


>gi|221632382|ref|YP_002521603.1| (dimethylallyl)adenosine tRNA methylthiotransferase
           [Thermomicrobium roseum DSM 5159]
 gi|221157157|gb|ACM06284.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Thermomicrobium roseum
           DSM 5159]
          Length = 458

 Score =  415 bits (1066), Expect = e-113,   Method: Composition-based stats.
 Identities = 152/465 (32%), Positives = 241/465 (51%), Gaps = 18/465 (3%)

Query: 5   IKLIGVAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADL 64
           ++LI +    + IVD     +RF + + GCQMN  +S +   +    GY       DAD+
Sbjct: 1   MQLIQLQPAPASIVDAVPGVKRFHIWTIGCQMNEAESAKAAALLRQAGYVPAVREWDADI 60

Query: 65  IVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIV 124
           +++NTC +R++A +K   ++G +  LK    +   D+ + V GC+   +   +  R P V
Sbjct: 61  VIVNTCVVRQQAEDKALGYIGALARLK----RRRPDVRIAVTGCLVTGQERRLAERFPWV 116

Query: 125 NVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQE 184
           ++  GP  + RL  L+         VD D      +      D        VTAF+ +  
Sbjct: 117 DLWYGPSEFERLVSLVPELAD----VDIDLVELPHYYDEGQADPE------VTAFVPVIY 166

Query: 185 GCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK 244
           GC+  C++C+VPY RG E SR + QVV E  KL   GV E+TLLGQ VNA  G  L G+ 
Sbjct: 167 GCNFVCSYCIVPYRRGRERSRPVEQVVAEVEKLAARGVREVTLLGQTVNA-YGHDLPGQP 225

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304
              +DLL  + ++ G+ R+R+ TSHP+  SD LI+A  DL  +  +++LPVQSG + +L+
Sbjct: 226 -DLADLLERVHDVPGIERIRFLTSHPKYFSDKLIRAVADLPKVCEHVNLPVQSGDNEVLR 284

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
            M R +T  EYR+ I RIR + PD+ +S+D IVGFPGET++ F  T  L+++I + +   
Sbjct: 285 RMRRHYTVEEYRERIARIRELIPDVTLSTDIIVGFPGETEEQFLNTYRLLEEIRFDKVHV 344

Query: 365 FKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE 424
             YSPR GT  +   + V    K  R   +++         N+  VG+ +E+L++   + 
Sbjct: 345 AMYSPRPGTLSARWPDDVPREEKRRRHRAVEQLQERIARERNERYVGRTVEILVDGLARG 404

Query: 425 KGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
           + +    +     V   +     G  ++VR+T      L GE V 
Sbjct: 405 RWRGR--TRGNTLVFFEAPGDWRGRFVEVRVTQASPWYLLGEPVT 447


>gi|291563521|emb|CBL42337.1| SSU ribosomal protein S12P methylthiotransferase
           [butyrate-producing bacterium SS3/4]
          Length = 445

 Score =  415 bits (1066), Expect = e-113,   Method: Composition-based stats.
 Identities = 142/444 (31%), Positives = 225/444 (50%), Gaps = 16/444 (3%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
             S GC  N+ D+ +M  +   +GY  V+  ++AD++V+NTC     A E+  + + ++ 
Sbjct: 5   FISLGCDKNLVDTEKMLGILGKEGYSFVDDENEADIVVVNTCCFIGDAKEESINTILQMA 64

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
            LK    K G    ++V GC+AQ   +EI+   P V+ ++G  +Y  +   +     G+ 
Sbjct: 65  ELK----KNGRLKALIVTGCLAQRYKQEIIDEIPEVDAILGTTSYEAVGAAIREVMDGE- 119

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
              T    E     +S          G  AFL I EGCDK CT+C++PY RG   S  + 
Sbjct: 120 ---TPEIFESIDAPVSTATERLITTGGHYAFLKIAEGCDKRCTYCIIPYLRGKYRSVPME 176

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
           Q+V EA +L + GV E+ L+ Q      GK L GEK    +LL  L+ + G+  +R    
Sbjct: 177 QLVREAEELAEKGVKELILVAQETT-LYGKDLYGEKK-LPELLRRLAAVSGIQWIRLQYC 234

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
           +P +++D LI+     + +  YL +P+Q  SD +LK M RR    E R +I ++R   PD
Sbjct: 235 YPEEITDELIETIKTEEKVCNYLDIPIQHASDAVLKRMGRRTNNKEIRGLIAKLRKEIPD 294

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           IA+ +  I GFPGE ++D    M  VD + + +   F YSP   TP  +   QV E VK 
Sbjct: 295 IALRTTLISGFPGEMEEDHEILMQFVDDMEFDRLGVFAYSPEEDTPAFSFENQVPEEVKQ 354

Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVLNSKN 444
           ERL  + +  +E     ++A  G+ +EV+IE    ++   VGR+    P +  ++  +  
Sbjct: 355 ERLDEIMELQQEIAFEKSEAMKGRTLEVMIEGKVADENAYVGRTYMDSPNVDGLIFVNTG 414

Query: 445 HNI--GDIIKVRITDVKISTLYGE 466
            ++  GD +KVR+T      L GE
Sbjct: 415 LSLMSGDFLKVRVTGASEYDLIGE 438


>gi|322382319|ref|ZP_08056226.1| AdoMet radical enzyme-like protein for tRNA modification
           [Paenibacillus larvae subsp. larvae B-3650]
 gi|321153672|gb|EFX46047.1| AdoMet radical enzyme-like protein for tRNA modification
           [Paenibacillus larvae subsp. larvae B-3650]
          Length = 442

 Score =  415 bits (1066), Expect = e-113,   Method: Composition-based stats.
 Identities = 136/451 (30%), Positives = 234/451 (51%), Gaps = 15/451 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + ++  V + GC+ N+ DS  M  +   +G+  V+  ++A +I++NTC   + A E+  +
Sbjct: 1   MSEKVKVVTLGCEKNLVDSEIMGGLINERGFSLVDQAEEATVIIVNTCGFIDAAKEESIN 60

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +  +  LK           ++V+GC+ Q   EE+++  P ++ +VG   ++++ +++++
Sbjct: 61  TILDMAELKQ----TAHLKALIVSGCLTQRYKEELMKELPEIDGIVGTGDFHKINDIIDQ 116

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           A  GK+ +     V +    L             TA++ I EGCD  CTFC +P  RG  
Sbjct: 117 ALNGKKPILVGNPVFNYEAALP----RRITTPRYTAYVKIAEGCDNNCTFCSIPIMRGKF 172

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SRS+  ++ E R+L + GV EI+L+ Q+     G  L  +     +LL  +S I+G+  
Sbjct: 173 RSRSMESILAEVRQLSEQGVKEISLIAQDST-NYGIDLY-DSYVLPELLNKVSAIEGIEW 230

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R   ++P   +D LI+       +  Y+ LP+Q   D +LK M R     + R++I +I
Sbjct: 231 VRLHYAYPGFFTDELIETIATNPKICKYIDLPLQHSEDSVLKRMRRPGRQKDARELIRKI 290

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           RS  PD A+ +  IVGFPGET++DF++ +D V +I + +   F YS    TP S + +Q+
Sbjct: 291 RSRIPDAALRTSIIVGFPGETEEDFQSLVDFVKEINFDRLGVFTYSREQDTPASRLPDQI 350

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQS- 437
            ++VK  R   L +  R+     N   +G  I VLIE++       +GRS    P +   
Sbjct: 351 PDDVKEYRANVLMEVQRQISHERNGKRIGMEIPVLIERYDGRNDVFIGRSQFDAPEIDGE 410

Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           V +++K   IG I +VRIT      L GE+V
Sbjct: 411 VFVSAKRLEIGRIARVRITHSFEFDLSGEVV 441


>gi|251796225|ref|YP_003010956.1| RNA modification enzyme, MiaB family [Paenibacillus sp. JDR-2]
 gi|247543851|gb|ACT00870.1| RNA modification enzyme, MiaB family [Paenibacillus sp. JDR-2]
          Length = 448

 Score =  415 bits (1066), Expect = e-113,   Method: Composition-based stats.
 Identities = 135/447 (30%), Positives = 240/447 (53%), Gaps = 20/447 (4%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
               + GC++N YD+  +  +F ++GYE+V+    AD+ ++NTC +     +K    + R
Sbjct: 4   VAFYTLGCKVNFYDTEAIWQLFKNEGYEQVDFESTADVYLINTCTVTNTGDKKSRQIIRR 63

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
                   ++   D ++ V GC AQ    EI+   P V++V+G Q   ++   + +    
Sbjct: 64  A-------VRRNPDAVIAVTGCYAQTSPAEIMA-IPGVDLVIGTQDREKIMTFVNQIHDD 115

Query: 147 KRVVDTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
           ++ V+   ++     FE L + D     +    AFL IQEGC+ FCTFC++P++RG+  S
Sbjct: 116 RQPVNAVRNIMKTREFEELDVPDFNERTR----AFLKIQEGCNNFCTFCIIPWSRGLSRS 171

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R    V+++A++L+ +G  E+ L G +     G G D E     DLL+ L +I+GL R+R
Sbjct: 172 RDPKSVLEQAKQLVASGYKEVVLTGIHTG---GYGDDMENYRLVDLLWDLDKIEGLERIR 228

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
            ++     + D +I        +  +LH+P+Q+G   +LK M R++T  E+   + RIR 
Sbjct: 229 ISSIEASQIDDAMIDVLNRSTKMCRHLHIPLQAGDTSVLKRMRRKYTTDEFAAKLKRIRE 288

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             P +AI++D IVGFPGET++ F      ++++G+++   F YS R GTP + M +QVD+
Sbjct: 289 AMPGVAITTDVIVGFPGETEEMFENGYKFMEEVGFSEMHVFPYSKRTGTPAARMDDQVDD 348

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK---EKGKLVGRSPWLQSVVLN 441
            VK ER+  L     + Q+++ +  VG +++V+ E+  K     G ++G S     +V  
Sbjct: 349 EVKNERVHKLIDLSEKMQLAYAEQHVGAVLDVIPERDYKGAPGTGLVMGYSDNYIQIVFE 408

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                +G + +V+IT+  ++    +LV
Sbjct: 409 GTEALVGKLCRVKITEAGVNECRAQLV 435


>gi|86158777|ref|YP_465562.1| (dimethylallyl)adenosine tRNA methylthiotransferase
           [Anaeromyxobacter dehalogenans 2CP-C]
 gi|123736702|sp|Q2IKE9|MIAB_ANADE RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|85775288|gb|ABC82125.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 464

 Score =  414 bits (1065), Expect = e-113,   Method: Composition-based stats.
 Identities = 188/451 (41%), Positives = 265/451 (58%), Gaps = 22/451 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ +V ++GCQMN  DS RM ++     Y R  S D+ADLI+LNTC +REKA +K+ S L
Sbjct: 27  RKVYVHTFGCQMNESDSDRMVELLGRHAYARAASADEADLILLNTCAVREKAEQKLLSAL 86

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR R +K          L+ V+GCVAQ E + +L R P V+ V GP    RLPE++ERAR
Sbjct: 87  GRYREVKAR-----RGALIAVSGCVAQQEKDRLLARVPYVDFVFGPDNIARLPEMVERAR 141

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G+R  +T +   +++      D    R R  TAF+T  +GCD  C FC+VP+TRG E+S
Sbjct: 142 -GERFAETGWMDSEEY-VFPRADAEAARGRA-TAFVTAMKGCDNVCAFCIVPHTRGREVS 198

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R    VV E   L   GV E+TL+GQNVN++      G  CTF+DLL  ++ + G+ R+R
Sbjct: 199 RPFPDVVAECAALAAVGVREVTLIGQNVNSY------GGGCTFADLLRRVAAVPGIDRIR 252

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +TTSHP D+S  L++   D   +MP+ HLPVQSGSD +L+ M R ++  EY    DR+R+
Sbjct: 253 FTTSHPHDLSGALVEVFRDEPKVMPHFHLPVQSGSDAVLRRMRRDYSVAEYLDRFDRLRA 312

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE---- 380
            RP IAI++DFIVGFPGETD DF A++ L+++  + Q+FSF +SPR  T  +  L     
Sbjct: 313 ARPGIAITTDFIVGFPGETDADFEASLALLERARFEQSFSFVFSPRPHTVAAVRLGSAPE 372

Query: 381 --QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSV 438
              V  +V   RL  L    R        A +G+++EVL+E    E G+ +GR+P  + V
Sbjct: 373 WQDVPRDVAVARLERLLAAQRRIAGEILAAELGKVVEVLVEGPSDEPGERLGRTPENRVV 432

Query: 439 VLNSKNHNIGDI--IKVRITDVKISTLYGEL 467
            L +          + VRIT    S+L G L
Sbjct: 433 HLTADEAAAPAGARVPVRITRAGGSSLSGTL 463


>gi|238066630|sp|Q2JSD0|RIMO_SYNJA RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
          Length = 460

 Score =  414 bits (1065), Expect = e-113,   Method: Composition-based stats.
 Identities = 132/468 (28%), Positives = 229/468 (48%), Gaps = 23/468 (4%)

Query: 5   IKLIGVAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADL 64
           +  +  A   S + +         V   GC+ N  D+  M  +    GY      D AD 
Sbjct: 1   MNWLETALSTSSLKEAPA----VAVLHLGCEKNRVDTEHMLGLLAQAGYRVEGDEDSADY 56

Query: 65  IVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIV 124
           +++NTC   E A  +  S L  +               +++AGC+AQ   EE+LR  P  
Sbjct: 57  VIVNTCSFIEAARRESVSTLMELAVQGKK---------IIIAGCLAQHFQEELLREIPEA 107

Query: 125 NVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQE 184
             +VG   Y+++ ++++RA  G+RV     S++   +        Y       A+L + E
Sbjct: 108 VAIVGTGDYHQIVQVIQRAERGERVNAVTSSLDYIADETVP---RYRTTHAPVAYLRVAE 164

Query: 185 GCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK 244
           GCD  C+FC++P+ RG + SR +  ++ EA +L   GV E+ L+ Q +    G  L GE 
Sbjct: 165 GCDYRCSFCIIPHLRGKQRSRPIESILREAEQLAAEGVQELILISQ-ITTNYGLDLYGEP 223

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304
              ++L+ +L +I  +  +R   ++P  ++  +++A  +    + YL LP+Q     ILK
Sbjct: 224 -RLAELIRALGQIP-IPWIRMLYAYPTGITPAVVEAIQETPNFLLYLDLPLQHSHPAILK 281

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
           +MNR        ++I+R+R   P   + + FIVGFPGET++ F+  ++ V +  +     
Sbjct: 282 AMNRPWQGQVNDRLIERLRQALPKAVLRTSFIVGFPGETEEHFQHLLEFVQRHQFDHVGV 341

Query: 365 FKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE 424
           F +SP  GTP  ++ +QV E +K ER   L +  +      N   VGQ++ VL+E+    
Sbjct: 342 FTFSPEEGTPAYHLPQQVPEPLKEERRARLMQLQQGIAFRRNREQVGQVVPVLLEQENPR 401

Query: 425 KGKLVGRS----PWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            G+ +GRS    P +  VV      ++G ++ V+IT  +   L+G++V
Sbjct: 402 TGEWIGRSPRFAPEVDGVVYVRGPGSLGSLVPVQITRAEPYDLFGQVV 449


>gi|323702404|ref|ZP_08114069.1| RNA modification enzyme, MiaB family [Desulfotomaculum nigrificans
           DSM 574]
 gi|323532710|gb|EGB22584.1| RNA modification enzyme, MiaB family [Desulfotomaculum nigrificans
           DSM 574]
          Length = 441

 Score =  414 bits (1065), Expect = e-113,   Method: Composition-based stats.
 Identities = 146/449 (32%), Positives = 225/449 (50%), Gaps = 16/449 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + +   + + GC++N Y+S  + D+F   GY+ V+    AD+ V+NTC +      K   
Sbjct: 1   MTKTAAIYTLGCKVNQYESAAIGDLFRQAGYQLVDFEQPADVYVVNTCTVTHLGDRKSRQ 60

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            + R         K+    ++ V GC AQ    E+L   P V++VVG +   R+ +L+E 
Sbjct: 61  IIRRAA-------KQNPAAVIAVTGCYAQTSPGEVL-EIPGVDLVVGTRDRARIVKLVEG 112

Query: 143 ARFGKRVVDT--DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
               K  V+   D    + FE L +            AFL IQEGC+ FC +C++PY RG
Sbjct: 113 HVKNKGPVNAVEDIMQSECFEELPVPTEQGK----ARAFLKIQEGCNSFCAYCIIPYARG 168

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
              SR    V+  A +L+  G  EI L G ++ A  G+    +    + L+  L+ + GL
Sbjct: 169 PVRSRLPENVLKAATELVQQGYQEIVLTGIHIGA-YGQDFTAQNIDLAWLVERLAAVPGL 227

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            RLR  +  P D++  LI+A  +   +  +LH+P+QSG D+IL  M RR+   EY ++I 
Sbjct: 228 RRLRLGSVEPHDINTALIEAVANHPNICRHLHIPLQSGDDQILAKMRRRYDTREYNRLIA 287

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
            I    P +AI+SD IVGFPGET+ +F+ T+  V K  +A+   FKYSPR GTP +   +
Sbjct: 288 EIYRKVPGVAITSDVIVGFPGETEANFQNTLRTVAKAKFARIHVFKYSPRKGTPAAEFAD 347

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRSPWLQSVV 439
           QV    K ER   L +   +    F    VG+ +EVL+E+   E      G +     V+
Sbjct: 348 QVPPEEKEERSRRLIELGEQLAHEFARIQVGKDLEVLVEQPSHEYTPLWEGHTDTYLKVI 407

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
             +     G I KV I +V+   L G ++
Sbjct: 408 FPADESVRGQIAKVHIDNVEGPILKGTII 436


>gi|302386432|ref|YP_003822254.1| RNA modification enzyme, MiaB family [Clostridium saccharolyticum
           WM1]
 gi|302197060|gb|ADL04631.1| RNA modification enzyme, MiaB family [Clostridium saccharolyticum
           WM1]
          Length = 482

 Score =  414 bits (1065), Expect = e-113,   Method: Composition-based stats.
 Identities = 162/446 (36%), Positives = 262/446 (58%), Gaps = 16/446 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
            F + ++GCQMN  DS +++ +  + G+   +  ++AD ++ NTC +RE A ++VY  LG
Sbjct: 47  TFHIATFGCQMNSRDSEKLQGILEAIGFVE-HDTEEADFVLYNTCTVRENANDRVYGRLG 105

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELL-ER 142
            + +LK    K+   +++ + GC+ Q E    +I +    V+++ G    ++L EL+ ER
Sbjct: 106 YLNSLK----KKNPYMMIALCGCMMQEEEVVAKIKKSYRFVDIIFGTHNIFKLAELMYER 161

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
               K VVD     +   E L        RK    + + I  GC+ FC++C+VPY RG E
Sbjct: 162 LEEKKMVVDIWEGTDRIVEDLPT-----ERKYSFKSGVNIMFGCNNFCSYCIVPYVRGRE 216

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SRS   +++E ++L+++GV EI LLGQNVN+  GK LD    +F++LL  + +++GL R
Sbjct: 217 RSRSPKDILEEIKQLVNDGVVEIMLLGQNVNS-YGKTLDT-PVSFAELLTQIDQVEGLER 274

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+ TSHP+D+SD LIKA  +   +  +LHLP+QSGS RILK MNR++T  +Y +++++I
Sbjct: 275 IRFMTSHPKDLSDELIKAMKNSKKVCHHLHLPLQSGSSRILKVMNRKYTKEQYLELVEKI 334

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+  PDI++++D IVGFPGET++DF  T+++V K+ +  AF+F YS R GTP + M EQV
Sbjct: 335 RTAIPDISLTTDIIVGFPGETEEDFNETLEVVRKVRFDSAFTFIYSKRTGTPAAKMEEQV 394

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSVVLN 441
            E     R   L  +++          V  + +VL E+ +  E+G L GR     +V   
Sbjct: 395 SEEAIKNRFDRLLDEVKNISSEVCGREVHTVQKVLAEEVNDHEEGLLTGRLGNNTTVHFK 454

Query: 442 SKNHNIGDIIKVRITDVKISTLYGEL 467
             +  IG I+ V + + +     G L
Sbjct: 455 GDSSLIGKIVDVYLDESRGFYYMGTL 480


>gi|257791365|ref|YP_003181971.1| RNA modification enzyme, MiaB family [Eggerthella lenta DSM 2243]
 gi|257475262|gb|ACV55582.1| RNA modification enzyme, MiaB family [Eggerthella lenta DSM 2243]
          Length = 459

 Score =  414 bits (1065), Expect = e-113,   Method: Composition-based stats.
 Identities = 168/450 (37%), Positives = 253/450 (56%), Gaps = 15/450 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
            F ++++GCQMN +DS R+  M    G  +V++++DAD++   TC +RE A  ++Y  + 
Sbjct: 9   TFCIRTFGCQMNKHDSERIAGMLEGMGALQVDAIEDADVVAFMTCCVREAADTRLYGQVA 68

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA-R 144
            ++N+           +V V GC+ Q +GE+++     ++VV G      LP LLE A  
Sbjct: 69  SLKNVPLRAGTPLSKRIVAVGGCIGQRDGEKLVDELKHLDVVFGTHNLGSLPRLLEAALE 128

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G   V+   +       L        R+    A+L I  GC+ FC++C+VPY RG E S
Sbjct: 129 EGSHQVEVLDAASSFPTELPTA-----REHEWAAWLPITIGCNNFCSYCIVPYVRGREKS 183

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R L  +V EA + +  GV EITLLGQNVN+  G+ L G    F+ +L +L +  G+ RLR
Sbjct: 184 RPLEDIVAEAERYVAAGVKEITLLGQNVNS-YGRDLYGSP-RFAQVLDALDQ-TGIERLR 240

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           + TSHP+D++D ++     L  LMP LHLPVQSGSD +L +MNRR+T   YR ++ ++R 
Sbjct: 241 FATSHPKDLNDEVVGRFATLRSLMPALHLPVQSGSDAVLAAMNRRYTRDHYRALVAKLRD 300

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             PDIA+S+D IVGFPGET  DF  T  LVD++GY Q F+F YS R GTP ++M +    
Sbjct: 301 AVPDIALSTDIIVGFPGETAKDFEDTYRLVDEVGYHQVFTFIYSKREGTPAASMDDDTPR 360

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVLNSK 443
            V  +R   L   ++++    N   +G  ++VL+E   K   + L G+SP  Q+V   + 
Sbjct: 361 EVIQQRFDRLVDLVQQRAFEANQRDLGSTVDVLVEGASKRDERLLAGKSPKNQTVHAPAP 420

Query: 444 -----NHNIGDIIKVRITDVKISTLYGELV 468
                    G  ++VR+ + K   L GE+V
Sbjct: 421 AGVRAEDLAGSTVRVRVDEAKTWYLAGEIV 450


>gi|159037038|ref|YP_001536291.1| RNA modification protein [Salinispora arenicola CNS-205]
 gi|229890640|sp|A8M7W6|MIAB_SALAI RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|157915873|gb|ABV97300.1| RNA modification enzyme, MiaB family [Salinispora arenicola
           CNS-205]
          Length = 502

 Score =  414 bits (1065), Expect = e-113,   Method: Composition-based stats.
 Identities = 166/464 (35%), Positives = 254/464 (54%), Gaps = 21/464 (4%)

Query: 17  IVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERV-NSMDDADLIVLNTCHIREK 75
                  P+ + V++YGCQMNV+DS R+  +    GY R  ++ D  D++V NTC +RE 
Sbjct: 4   TTAAASSPRTYQVRTYGCQMNVHDSERIAGLLEQAGYLRAGDADDVPDVVVFNTCAVREN 63

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135
           A  ++Y  LG++R  K+        + + V GC+AQ +  EI+RR+P V+VV G      
Sbjct: 64  ADNRLYGNLGQLRPSKDRH----PGMQIAVGGCLAQKDRSEIVRRAPWVDVVFGTHNIGS 119

Query: 136 LPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
           LP LLERAR             D F           R+     +++I  GC+  CTFC+V
Sbjct: 120 LPVLLERARHNAAAEVEILESLDVFPSTLPTR----RESTYAGWVSISVGCNNTCTFCIV 175

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
           P  RG E  R    V+ E R L+D GV E+TLLGQNVN++  +   G++  F  LL +  
Sbjct: 176 PALRGKERDRRPGDVLSEVRALVDEGVLEVTLLGQNVNSYGIEF--GDRYAFGKLLRACG 233

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
           +I GL R+R+T+ HP+D +D +I A  +   +   LH+P+QSGSD +L++M R + +  Y
Sbjct: 234 DIDGLERVRFTSPHPKDFTDDVIAAMAETPNVCHSLHMPLQSGSDDVLRAMRRSYRSERY 293

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
             II+++R+  PD AI++D IVGFPGET+ DF  T+D+V    ++ AF+F+YS R GTP 
Sbjct: 294 LGIIEKVRAAMPDAAITTDIIVGFPGETEADFERTLDVVRSARFSSAFTFQYSKRPGTPA 353

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI---EK-HGKEKGKLVGR 431
           + M +Q+ + V  ER   L   + E   + N   VG+ +EVL+   E    +  G+L GR
Sbjct: 354 ATMADQLPKPVVQERYERLVACVEEITWAENRRLVGETVEVLVAVGEGRKDERTGRLSGR 413

Query: 432 SPWLQSVVLNSKNH----NIGDIIKVRITDVKISTLY--GELVV 469
           +   + V  ++ +       GD++   +T      L   GE + 
Sbjct: 414 ARDGRLVHFDAGSLAGQIRPGDVVHTTVTYAAPHHLNADGEPLA 457


>gi|46447392|ref|YP_008757.1| 2-methylthioadenine synthetase [Candidatus Protochlamydia
           amoebophila UWE25]
 gi|81626503|sp|Q6MAB7|MIAB_PARUW RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|46401033|emb|CAF24482.1| probable 2-methylthioadenine synthetase [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 450

 Score =  414 bits (1065), Expect = e-113,   Method: Composition-based stats.
 Identities = 171/445 (38%), Positives = 266/445 (59%), Gaps = 14/445 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++FFVK+YGCQMN  DS  M     ++G  R +  +DADL++ NTC IR+ A  KV   L
Sbjct: 17  KKFFVKTYGCQMNELDSEIMIGQLENRGLTRSHDENDADLLIFNTCSIRDLAERKVMGKL 76

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           G++   K S        ++ V GC+A A+ + + ++ P ++ V+G    + L  +L+   
Sbjct: 77  GKLGLTKQS------QAIIGVTGCMANAKKDSLFQKLPHIDFVLGTNNIHDLNHVLDEVL 130

Query: 145 F-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             GK+ + TD   E + + L        R+  + A+++I  GCDKFCT+CVVPYTRG E+
Sbjct: 131 ASGKQSIRTDDHFEFELDYL-----NAKREDQIKAYVSIIRGCDKFCTYCVVPYTRGSEV 185

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR+   +++E R L++ G  EITLLGQNVN+  GK     KC F DLLY L +I GL R+
Sbjct: 186 SRAPENILEECRHLVNQGYKEITLLGQNVNS-YGKDKLEWKCLFHDLLYQLDKIPGLERV 244

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+ TSHP D+S  L++A  DL  L  ++H P+Q+GS+R+LK M+R +T  +Y + +  ++
Sbjct: 245 RFMTSHPVDISKELMEAIRDLKTLCEFVHFPLQAGSNRVLKKMHRIYTVEQYLEKVQMLK 304

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
            + P++A+ +D IVGFP ET+++F+ T  L+ +I Y+ AF F YSPR GTP     + V 
Sbjct: 305 EIVPNVALGTDIIVGFPTETEEEFQETYRLLKEIEYSVAFLFSYSPRKGTPAMRWRDDVP 364

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GRSPWLQSVVLNS 442
           E VK +RL  L +      +    A +GQ +EVL+E+   +  +LV GR+   ++V+   
Sbjct: 365 EEVKQDRLQRLLQLQDTIYMKHRQAFLGQTVEVLVERRNFKDDRLVKGRTRCWKNVLFTG 424

Query: 443 KNHNIGDIIKVRITDVKISTLYGEL 467
            +  +G + +V+I      TL G+L
Sbjct: 425 GDELVGTMQQVKIHGYSHQTLLGDL 449


>gi|282892480|ref|ZP_06300814.1| hypothetical protein pah_c260o033 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281497762|gb|EFB40126.1| hypothetical protein pah_c260o033 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 437

 Score =  414 bits (1064), Expect = e-113,   Method: Composition-based stats.
 Identities = 164/446 (36%), Positives = 245/446 (54%), Gaps = 14/446 (3%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+ F+V++YGCQMN  DS  M  +  ++G  R    + ADL++ NTC IR+ A  KV   
Sbjct: 4   PKTFYVRTYGCQMNELDSEVMVGILENRGLVRSMEEETADLLIFNTCSIRDLAERKVMGK 63

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LG++            D ++ V GC+A A+ E +  + P ++ V+G    + L  +L+  
Sbjct: 64  LGKL------GRNRNHDTIIGVTGCMANAKKESLFHKVPHIDFVLGTNNIHDLNRVLDDV 117

Query: 144 -RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
              GK+   TD   E + + +     G  R   V+A ++I  GC K+CT+CVVPYTRG E
Sbjct: 118 ISTGKQTSLTDTKFETELDYM-----GAKRDNKVSAHVSIIRGCSKYCTYCVVPYTRGEE 172

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR    +V+E R L+  G  EITLLGQNVN+  GK      C F DLL  L  I GL R
Sbjct: 173 VSRPPEHIVEECRHLVSQGYREITLLGQNVNS-YGKDAPEWGCLFHDLLEKLDAIPGLER 231

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+ TSHP D+S  L+ A  DL  L  ++H P+Q+GS+RILK M+R +T  EY + +  +
Sbjct: 232 IRFMTSHPVDISRELMLAIRDLKSLCEFVHFPIQAGSNRILKKMHRMYTVEEYLEKVAML 291

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R + P +A+ +D IVGFP ETD++F+ T  ++ +  YA AF F YS R GTP     + +
Sbjct: 292 RELVPHVALGTDIIVGFPTETDEEFQETYRILKETEYAVAFIFAYSARKGTPAMRWKDDI 351

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GRSPWLQSVVLN 441
            E VK +RL  L +   +         + + +EVL+E+   +  +L+  R+   ++VV  
Sbjct: 352 PEEVKDQRLKALMQLQEDIYAKQRQNLLDETLEVLVERPSTKDPRLLKARTRCWKNVVFE 411

Query: 442 SKNHNIGDIIKVRITDVKISTLYGEL 467
                IG +  V+I      TL   L
Sbjct: 412 GGEELIGTLQNVKIHSYTNQTLLATL 437


>gi|288817802|ref|YP_003432149.1| 2-methylthioadenine synthetase [Hydrogenobacter thermophilus TK-6]
 gi|288787201|dbj|BAI68948.1| 2-methylthioadenine synthetase [Hydrogenobacter thermophilus TK-6]
 gi|308751400|gb|ADO44883.1| RNA modification enzyme, MiaB family [Hydrogenobacter thermophilus
           TK-6]
          Length = 433

 Score =  414 bits (1064), Expect = e-113,   Method: Composition-based stats.
 Identities = 172/443 (38%), Positives = 269/443 (60%), Gaps = 11/443 (2%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           ++++K++GCQMN  DS R++ M  + GY+      +AD+I++NTC IREK  +KV+S LG
Sbjct: 2   KYYIKTFGCQMNFNDSERIKGMLQTLGYQEAKDWQEADIILINTCTIREKPDQKVFSHLG 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
             + LK          L+ V GC+AQ  G E++++SP+V+++      ++LPEL+++A+ 
Sbjct: 62  EYKKLKEQ----NPKALIGVCGCLAQRMGFELIQKSPVVDIMFSSFNMHQLPELIQQAQA 117

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G + V    +  D  ++L   D    R     A++T+ +GCDK CT+CVVP TRG + SR
Sbjct: 118 GYKAVAILENPPDDEDKL--WDYPTVRDNPYCAYVTVMKGCDKNCTYCVVPKTRGRQRSR 175

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           SL  ++ E R L+ +GV E+ LLGQNV AW GK +      FS+LLY ++EI G+ R+R+
Sbjct: 176 SLESILKEVRDLVSDGVKEVHLLGQNVTAW-GKDI---GKHFSELLYRVAEIDGVERIRF 231

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
           TT HP+D+ + + KA G++  +  ++HLP Q+GSDRILK M+R +T  EY + I  ++  
Sbjct: 232 TTGHPKDLDEGIAKAMGEIKKVCEHIHLPFQAGSDRILKLMDRGYTKEEYLEKISMLKEY 291

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
              I  S+D IVGFP ET++DF  T+D++ K+ + Q FSFK+SPR  TP  +M  QV + 
Sbjct: 292 VKGITFSTDVIVGFPTETEEDFEETLDMLKKVRFEQVFSFKFSPRPDTPAYSMEGQVPDQ 351

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445
           VK +R+  L +  +E       +  G I EVLIE   +   KL+GR+   + V +     
Sbjct: 352 VKTQRMSRLLQLQKEIMGEVAKSYEGTIQEVLIESI-EHGNKLIGRTRTNRWVSMEGGVE 410

Query: 446 NIGDIIKVRITDVKISTLYGELV 468
            +G ++KV++       +  ELV
Sbjct: 411 MLGKVVKVKVIRSYPFNMECELV 433


>gi|196231514|ref|ZP_03130372.1| RNA modification enzyme, MiaB family [Chthoniobacter flavus
           Ellin428]
 gi|196224367|gb|EDY18879.1| RNA modification enzyme, MiaB family [Chthoniobacter flavus
           Ellin428]
          Length = 463

 Score =  414 bits (1064), Expect = e-113,   Method: Composition-based stats.
 Identities = 172/459 (37%), Positives = 269/459 (58%), Gaps = 17/459 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           +P + F+K+YGCQMN  DS ++  M   +GYE      +AD+++LNTC +R+ A +K   
Sbjct: 1   MP-KVFLKTYGCQMNERDSEQVARMLVEKGYEMTPHETEADVVLLNTCSVRDMAEQKAIG 59

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +G +  L+ +      +++    GC+AQ+ G E+ R    V++VVG Q ++R+ E +E+
Sbjct: 60  KMGMLSRLRAN----KPEMIFGFLGCMAQSRGAELTRDMGHVDLVVGTQKFHRVAEYVEQ 115

Query: 143 ARFGKR---------VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC 193
               KR            +   VE++      +      ++  TAF++I +GC+  CTFC
Sbjct: 116 IIQRKRELRERLMDDARFSIVDVEEEAGSQETIREHVLTEKQATAFVSIMQGCNMHCTFC 175

Query: 194 VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQ--NVNAWRGKGLDGEKCTFSDLL 251
           +VP TRG E SR + ++V E   L+  GV E+TLLGQ  N+           K  F  LL
Sbjct: 176 IVPSTRGAERSRRIEEIVHEVEGLVARGVKEVTLLGQIVNLFGRHEFEKQDGKSPFVQLL 235

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
            ++  I+GL RLR+T+ HP    D L+ A  +L  LMP++HLP+QSGSDRILK+M+R +T
Sbjct: 236 EAVHAIEGLKRLRFTSPHPIGFRDDLVNAFAELPKLMPHVHLPMQSGSDRILKAMHRGYT 295

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
           A +Y  + +++R+ RPDIA+++D IVGFPGETD+D+ AT DLV ++G+  A+ F+YSPR 
Sbjct: 296 AEKYFSLTEKLRAARPDIAMTTDIIVGFPGETDEDYAATRDLVQRVGFDNAYIFRYSPRR 355

Query: 372 GTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVG 430
            TP + M +QV E VK ER   + + +     +  +A VG+ +E+L E   K    KL G
Sbjct: 356 DTPAATMGDQVAEAVKEERNQDVLRVVDTLAKAKGEALVGRNVEILCEGPSKTNDAKLTG 415

Query: 431 RSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
           R+P  + V+      +IG+I +V ++     +LYG+  V
Sbjct: 416 RTPGNKIVIFEGSERHIGEIFEVAVSRSSGFSLYGDPAV 454


>gi|327398199|ref|YP_004339068.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Hippea
           maritima DSM 10411]
 gi|327180828|gb|AEA33009.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Hippea
           maritima DSM 10411]
          Length = 421

 Score =  413 bits (1063), Expect = e-113,   Method: Composition-based stats.
 Identities = 170/443 (38%), Positives = 258/443 (58%), Gaps = 25/443 (5%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           F++K++GCQMN  DS ++  +    G++  + +  A+L+++N+C +REKA  K+YS +GR
Sbjct: 3   FYIKTFGCQMNERDSEKVIGILTQNGWKMTDDIKSANLVIVNSCAVREKAENKIYSEIGR 62

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           +R           +  VV  GCVAQ   E++ R   + ++VVG  T     ++ +  + G
Sbjct: 63  LRFK-------NKNATVVAMGCVAQINYEKLSR---VADIVVGTNTIDEFYKIAKTPQKG 112

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
             +           ER+   D  +    GV+AF+ I  GC+ FCT+C+VPYTRG EISR 
Sbjct: 113 AFIK----------ERMDNPDYIFPHVEGVSAFVDIMYGCNNFCTYCIVPYTRGREISRK 162

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
              +++E ++L D G  E+ LLGQNVN+  GKGL+     F DLLY +++I GL R+R+T
Sbjct: 163 KEAIIEEIKRLTDKGTKEVMLLGQNVNS-YGKGLE---YNFVDLLYEVNKIDGLKRIRFT 218

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
           TSHP+D S  LI A  DLD +  ++HLP+QSGS++ILK M R +T  +Y + +   +   
Sbjct: 219 TSHPKDFSKELIDAMRDLDKVCEHIHLPLQSGSNKILKLMRRGYTKEDYLEKVMLFKETI 278

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           P  +I++D IVGFP ET++DF  T+D++  + Y  +FSFKYS R  T  S M  Q+DE  
Sbjct: 279 PQGSITTDIIVGFPQETEEDFLETIDVLKTVEYDTSFSFKYSKRPLTKASQMKGQIDEKT 338

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN-SKNH 445
           K +RL  LQ+   +          G+I+EVL+E   K++G L GR+     V  N   N 
Sbjct: 339 KLKRLNYLQELQAQITQKKLKNYEGKIVEVLVEGKAKKEGMLSGRNRQNIVVNFNFRDNI 398

Query: 446 NIGDIIKVRITDVKISTLYGELV 468
             GD ++V+I      +L GEL+
Sbjct: 399 KAGDCLRVKIIKALKHSLVGELI 421


>gi|306836314|ref|ZP_07469294.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Corynebacterium accolens
           ATCC 49726]
 gi|304567785|gb|EFM43370.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Corynebacterium accolens
           ATCC 49726]
          Length = 489

 Score =  413 bits (1063), Expect = e-113,   Method: Composition-based stats.
 Identities = 155/451 (34%), Positives = 237/451 (52%), Gaps = 25/451 (5%)

Query: 36  MNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRI 95
           MNV+DS R+  +    GY   +   + DLIV NTC +RE A +++Y  LG ++  K +  
Sbjct: 1   MNVHDSERISGLLEEAGYAAADEATEPDLIVFNTCAVRENADKRLYGTLGALKKTKENH- 59

Query: 96  KEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYS 155
                + + V GC+AQ + + +L  +P V+ V G      LP LLERAR  +        
Sbjct: 60  ---PGMQIAVGGCLAQKDKDTVLDNAPWVDAVFGTHNMAALPTLLERARHNEEAQVEIVD 116

Query: 156 VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEAR 215
             + F  +        R+     ++++  GC+  CTFC+VP  RG E  R    ++ E +
Sbjct: 117 SLEAFPSVLPA----KRESAYAGWVSVSVGCNNTCTFCIVPSLRGKEEDRRPGDILAEVQ 172

Query: 216 KLIDNGVCEITLLGQNVNAWRGKGLDGEKCT----FSDLLYSLSEIKGLVRLRYTTSHPR 271
            L+D GV E+TLLGQNVNA+     D E       FS LL  + +I GL RLR+T+ HP 
Sbjct: 173 ALVDQGVSEVTLLGQNVNAYGVNFADPEMPRDRFAFSKLLREVGKIDGLERLRFTSPHPA 232

Query: 272 DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAI 331
           + +  +I A  +   + P LH+P+QSGSD++LK M R +   ++ +I+D +R   P+ AI
Sbjct: 233 EFTSDVIDAMAETPAVCPQLHMPLQSGSDKVLKDMRRSYRTKKFLRILDEVREKIPNAAI 292

Query: 332 SSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERL 391
           ++D IVGFPGET+ DF+ TMDLV +  +A AF+F+YSPR GTP + M  QV + V  +R 
Sbjct: 293 TTDIIVGFPGETEVDFQDTMDLVRRARFASAFTFQYSPRPGTPAAEMENQVPKEVVQDRF 352

Query: 392 LCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG----KLVGRSPWLQSVVLN------ 441
             L       Q   N   VG  +E+L++  G  K     ++ GR+   + V  +      
Sbjct: 353 ERLVALQDSIQAEENQKLVGTEVELLVQAEGGRKNDETHRMSGRARDGRLVHFSPIDDNG 412

Query: 442 ---SKNHNIGDIIKVRITDVKISTLYGELVV 469
              S     GD+++ ++T      L  +  V
Sbjct: 413 ADISVEIRPGDVVRTKVTGAGSFFLLADAAV 443


>gi|187735351|ref|YP_001877463.1| RNA modification enzyme, MiaB family [Akkermansia muciniphila ATCC
           BAA-835]
 gi|229890497|sp|B2UQE7|MIAB_AKKM8 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|187425403|gb|ACD04682.1| RNA modification enzyme, MiaB family [Akkermansia muciniphila ATCC
           BAA-835]
          Length = 458

 Score =  413 bits (1063), Expect = e-113,   Method: Composition-based stats.
 Identities = 163/456 (35%), Positives = 262/456 (57%), Gaps = 18/456 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           +P + ++K+YGCQMN  DS ++  MF  +GY   +  D+AD+I+ N+C IRE+A +K   
Sbjct: 1   MP-KLYIKTYGCQMNERDSEQVARMFVQKGYTMTDREDEADVILFNSCSIREQAEQKALG 59

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE- 141
            +G +      + +    ++  + GC+AQ++ EE+ +  P +++VVG Q Y+R+ E ++ 
Sbjct: 60  KMGLLA----KQQRHRPHVVYGMMGCMAQSKKEELFKELPRLDLVVGTQKYHRVFEHVDG 115

Query: 142 --RARFGKRVVD--------TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCT 191
             RAR  +R+ +            V ++ +  + +    N     TA+++I +GC+  C 
Sbjct: 116 ILRARQERRMDELQTAFSGTHVCDVAEEADSQNRIRDHLNPGVRSTAYVSIMQGCEMKCA 175

Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-RGKGLDGEKCTFSDL 250
           +C+VPYTRG E SR +  VVDE + L D GV E+TLLGQ VN + R     G K  F  L
Sbjct: 176 YCIVPYTRGAERSRPIRDVVDEVKMLADAGVKEVTLLGQIVNRYGRQMETAGGKGGFVQL 235

Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
           L ++ E++G+ R+R+ + HP      L++A   L  L  ++H P+QSGSDRILK M R +
Sbjct: 236 LEAVHEVEGIRRIRFVSPHPIGFRQDLVQAFTYLPKLCSHIHFPMQSGSDRILKMMRRPY 295

Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370
               Y  +  R++  RPD++I++D IVGFPGET++D+  T   V+++ +  AF F+YSPR
Sbjct: 296 RNETYLDLCSRMKQARPDLSITTDIIVGFPGETEEDYLLTRQAVEQVQFDNAFIFRYSPR 355

Query: 371 LGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLV 429
            GTP + M  Q+ E VK  R   L   + E  +  N   VG + EVL+E   K    +L 
Sbjct: 356 RGTPAAVMENQIPEEVKEARNQDLLAVVNEIAIRKNRDLVGTVQEVLLEGPSKTNAARLS 415

Query: 430 GRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYG 465
           GR+   + V++++     G+I+ +RI +    TLYG
Sbjct: 416 GRTSQNKPVMVDAAPDLAGEILPIRIEESTGFTLYG 451


>gi|158313078|ref|YP_001505586.1| RNA modification protein [Frankia sp. EAN1pec]
 gi|229890538|sp|A8L6J8|MIAB_FRASN RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|158108483|gb|ABW10680.1| RNA modification enzyme, MiaB family [Frankia sp. EAN1pec]
          Length = 494

 Score =  413 bits (1063), Expect = e-113,   Method: Composition-based stats.
 Identities = 168/456 (36%), Positives = 249/456 (54%), Gaps = 21/456 (4%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           +  + + V+++GCQMNV+DS R+  +  S GY       DAD++V NTC +RE A  ++Y
Sbjct: 1   MSGRSYQVRTFGCQMNVHDSERLAGLLESAGYVPAPEGSDADVVVFNTCAVRENADNRLY 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LG +   K    K    + + V GC+AQ +   IL R+P V+VV G    +RLP LLE
Sbjct: 61  GNLGHLYPAK----KSNPAMQIAVGGCLAQKDRSVILDRAPWVDVVFGTHNIHRLPVLLE 116

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           RAR             + F           R    +A+++I  GCD  CTFC+VP  RG 
Sbjct: 117 RARHNSAAQVEIAEALEVF----PSSLPARRASHHSAWVSISVGCDNTCTFCIVPSLRGG 172

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E  R    V+ E   L+  G  EITLLGQNVN+  G+ L G+   F+ LL +   ++GL 
Sbjct: 173 ERDRRPGDVLAEVEALVAEGALEITLLGQNVNS-YGRSL-GDPGAFAKLLRACGRVEGLE 230

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+T+ HPRD +D +I+A      + P LH+P+QSGSD +L+ M R +    +  I++R
Sbjct: 231 RVRFTSPHPRDFTDDVIEAMAQTPNVCPQLHMPLQSGSDVVLRRMRRSYRRERFLGIVER 290

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R+  PD AI++D IVGFPGET+ DF  T+D+V    +A AF+FKYSPR GTP + M   
Sbjct: 291 VRAAMPDAAITTDIIVGFPGETEADFADTLDVVRTARFAGAFTFKYSPRPGTPAAEMDGA 350

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEK---GKLVGRSPWLQS 437
           VD  V +ER   L     E   + N A VG+ +E+++ E  G++    G+L GR+   + 
Sbjct: 351 VDPAVVSERYGRLASLQDEMSWAENRAQVGRRVEIVVAEGEGRKDSATGRLSGRARDGRL 410

Query: 438 VV--LNSKNH-----NIGDIIKVRITDVKISTLYGE 466
           V   +   +        GD+++  +T      L  +
Sbjct: 411 VHLLVTGPHAQEGLVRPGDVVETVVTRGAPHHLTAD 446


>gi|78044693|ref|YP_359280.1| MiaB-like tRNA modifying enzyme [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|77996808|gb|ABB15707.1| MiaB-like tRNA modifying enzyme [Carboxydothermus hydrogenoformans
           Z-2901]
          Length = 434

 Score =  413 bits (1063), Expect = e-113,   Method: Composition-based stats.
 Identities = 158/444 (35%), Positives = 237/444 (53%), Gaps = 13/444 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++    + GC++N Y++  ++  F  +GYE V+  D AD+ V+NTC +   +  K    +
Sbjct: 2   KKVAFYTLGCKVNQYETEALKGAFLEKGYEIVDFSDYADIYVINTCTVTHLSDRKSRQMI 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            +               +V   GC AQ   EEIL + P VN+V+G     RL EL+E+  
Sbjct: 62  RKAVQK-------NPRAVVAAVGCYAQVAPEEIL-KIPEVNLVLGTVHKNRLVELVEKVL 113

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
             +  ++   S E+  E   +       K    AF+ IQEGC+ +C +C++PY RG   S
Sbjct: 114 RERTKINAVASFEELLEFEEMPLKLAPGK--ARAFVKIQEGCNSYCAYCIIPYARGPLRS 171

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R L  VV E +KL  +G  EI L G +  A+  +  D  K   +DL+  L +I  L RLR
Sbjct: 172 RPLEDVVAEVKKLCQSGFSEIVLTGIHTGAYGQEKQDLPK--LADLVAELFKIPELKRLR 229

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
            ++  P+D +  L+    +      +LHLP+QSG D ILK+M R++T+YEY ++I+ IR 
Sbjct: 230 LSSIEPQDFTVELLDVLANSPKFCRHLHLPLQSGDDDILKAMRRKYTSYEYLRLIETIRE 289

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             PDIA++SD IVGFPGET++ F  T +LV K+G+     FKYSPR GTP + M  Q+ E
Sbjct: 290 RIPDIALTSDVIVGFPGETEEQFLNTYNLVKKVGFMDIHVFKYSPRAGTPAAKMPGQIPE 349

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
             K  R L L     E   ++    +G+I+EV+ E+   E G   G S     V  +  N
Sbjct: 350 REKERRSLLLLNLKEELFKNYASKFLGKILEVIPEEQDTE-GFWEGHSDNYLRVKFSGNN 408

Query: 445 HNIGDIIKVRITDVKISTLYGELV 468
              G+I  V+IT++K   + GELV
Sbjct: 409 IKRGEIYPVKITEMKEGYVSGELV 432


>gi|95931189|ref|ZP_01313911.1| conserved hypothetical protein [Desulfuromonas acetoxidans DSM 684]
 gi|95132751|gb|EAT14428.1| conserved hypothetical protein [Desulfuromonas acetoxidans DSM 684]
          Length = 453

 Score =  413 bits (1063), Expect = e-113,   Method: Composition-based stats.
 Identities = 137/454 (30%), Positives = 235/454 (51%), Gaps = 16/454 (3%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           +  ++  + S GC  N+ D+  M        +E +   + AD++++NTC     A E+  
Sbjct: 1   MPRKKVCLVSLGCPKNLVDAEVMLGHLPPDRFEIITEEEAADILIINTCAFINDAQEESV 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             +      K      G   +++V GC+ Q   +E+    P V++ +G     R+ EL++
Sbjct: 61  DTILEAARFKEE----GQCRMLIVTGCLPQRYRDELATELPEVDLFMGTGDAARIVELID 116

Query: 142 RARFGKRVVD-TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           + +  ++ ++ T  + +  ++ L+            +A++ I EGC   C++C++P  RG
Sbjct: 117 QWQGSQQQINATSANPQALYDHLTPRAKASPF---YSAYVKIAEGCSNHCSYCIIPKLRG 173

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
           +  SRS+  +V E +KL+  GV E+ L+ Q++ A+     DG   T  +LL  L +I+ L
Sbjct: 174 MLRSRSIDSIVQEVQKLVKEGVKEVNLIAQDITAFGQDRSDG--ATLEELLQELVKIEDL 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
             LR   ++P  +S+ LI      D +  YL LP+Q  +D IL  MNRR  A + RQ+I 
Sbjct: 232 SWLRLLYAYPDGISNELIDLIASEDKICNYLDLPLQHINDDILSMMNRRIDAQDSRQLIS 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           R+R   PD+ + + FIVGFPGETD  ++  ++ V++  + +   F+YS   GT  +N+  
Sbjct: 292 RLRERIPDMTLRTSFIVGFPGETDAQYQQLLEFVEEGHFDRVGVFRYSREEGTAAANLDN 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GRS----PWL 435
           QVDE +K  RL  L K         +   VG+++ VLIE + +E   L+ GRS    P +
Sbjct: 352 QVDETIKKRRLDKLMKAQSRVSFRKHRDLVGKVVPVLIEGYSEETELLLQGRSPSQAPDI 411

Query: 436 QS-VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
              V + S   ++GDI+ ++ITD     L GE+V
Sbjct: 412 DGLVYVTSGQADVGDIVDLKITDTTEYDLIGEMV 445


>gi|163814091|ref|ZP_02205483.1| hypothetical protein COPEUT_00244 [Coprococcus eutactus ATCC 27759]
 gi|158450540|gb|EDP27535.1| hypothetical protein COPEUT_00244 [Coprococcus eutactus ATCC 27759]
          Length = 483

 Score =  413 bits (1063), Expect = e-113,   Method: Composition-based stats.
 Identities = 167/443 (37%), Positives = 251/443 (56%), Gaps = 16/443 (3%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           ++++GCQMNV DS ++  +    GY R  S + AD I+ NTC +RE A  KVY  LG ++
Sbjct: 51  IQTFGCQMNVRDSEKLAGILEQMGYVRTES-EHADFIIYNTCTVRENANRKVYGHLGLMK 109

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPEL-LERARF 145
           +LK        ++ + + GC+ Q +   E I +    V++V G    Y+L E+ + R   
Sbjct: 110 HLKEK----NPEMKIALCGCMMQEQHVVEIISKSYRFVDMVFGTHNVYKLAEIFVNRIES 165

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G  V+D     ++  E L  V     R+    + + I  GC+ FCT+C+VPY RG E SR
Sbjct: 166 GSMVIDIWKDAKEVVEDLPAV-----REFPFKSGVNIMFGCNNFCTYCIVPYVRGRERSR 220

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           +   ++ E  +L D+GV EI LLGQNVN+  GK L+    TF++LL  +  I+ + R+R+
Sbjct: 221 NPEDIIAECERLADDGVVEIMLLGQNVNS-YGKNLE-HPITFAELLRRICTIEKIQRVRF 278

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
            TSHP+D+SD LI    D   +  +LHLPVQSGS +IL +MNRR+T   Y  ++DRIR+ 
Sbjct: 279 MTSHPKDLSDELIDVIADNPKVCRHLHLPVQSGSTKILNAMNRRYTKESYLALVDRIRTK 338

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P+I++++D IVGFPGET++DF  TMD+V+K+ Y  AF+F YS R GTP + M     + 
Sbjct: 339 VPEISLTTDIIVGFPGETEEDFLETMDVVEKVQYDTAFTFIYSKRTGTPAAGMENGSTKE 398

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRSPWLQSVVLNSKN 444
              +R   L ++++E       A  GQ   VL+E   ++  G L GR      V      
Sbjct: 399 EIQDRYNRLLRRVQEISDVKTLAIKGQTQPVLVEGFDEKGDGLLTGRLSNNILVHFPGCA 458

Query: 445 HNIGDIIKVRITDVKISTLYGEL 467
             +G I+ V++ + K     GEL
Sbjct: 459 EMVGKILNVKLVECKGFYYMGEL 481


>gi|307720461|ref|YP_003891601.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Sulfurimonas autotrophica
           DSM 16294]
 gi|306978554|gb|ADN08589.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Sulfurimonas autotrophica
           DSM 16294]
          Length = 434

 Score =  413 bits (1063), Expect = e-113,   Method: Composition-based stats.
 Identities = 162/450 (36%), Positives = 252/450 (56%), Gaps = 19/450 (4%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++ F+++ GC MN  DS  M       +GYE   +++DADLI++NTC +RE+   K++
Sbjct: 1   MSKKLFIETLGCAMNSRDSEHMIAQLREKEGYETTQNLEDADLILINTCSVRERPVHKLF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S LG  +  K           + V GC A   GEEI++R+P VN V+G +   ++ E+L 
Sbjct: 61  SELGGFKKRKK------PSAKIGVCGCTASHLGEEIIKRAPYVNFVLGARNVSKIGEVLH 114

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           + +  +  ++ D S E  F+          R     A++ I  GCDK CT+C+VP TRG 
Sbjct: 115 KDKAVEIDINYDES-EFAFDDF--------RTSSYKAYINISIGCDKQCTYCIVPKTRGD 165

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW--RGKGLDGEKCTFSDLLYSLSEIKG 259
           EIS     +++EA++ +DNG  EI LLGQNVN +  R    + EK  F++LL  LS+I+G
Sbjct: 166 EISIPDDLIINEAKRAVDNGAKEIFLLGQNVNNYGRRFSSSEHEKVNFTELLRRLSKIEG 225

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           L R+R+T+ HP  M D  I+       +   +H+P+QSGS ++LK M R +T   +   +
Sbjct: 226 LERIRFTSPHPFHMDDEFIEEFAKNPKICKSMHMPLQSGSSKVLKEMKRGYTKEWFLNRV 285

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            ++RSV PD++IS+D IV FPGE+D+DF  T+D++ ++ + Q FSFKYSPR  T   +  
Sbjct: 286 QKLRSVCPDVSISTDIIVAFPGESDEDFADTIDVMKQVKFDQIFSFKYSPRPETEAEHFT 345

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV 439
             VDE+V ++RL  LQ    E     N   +G+   V  E   K+   + GRS     + 
Sbjct: 346 NVVDEDVASDRLAYLQSLHNELLDEINTKYLGETFRVYFENLNKD-NFVSGRSDNNLVIK 404

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELVV 469
           +      +G+   V+IT +  + L GE+V 
Sbjct: 405 VKGSEELLGEFRDVKITSIGRTILTGEIVA 434


>gi|320450914|ref|YP_004203010.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Thermus scotoductus
           SA-01]
 gi|320151083|gb|ADW22461.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Thermus scotoductus
           SA-01]
          Length = 440

 Score =  413 bits (1063), Expect = e-113,   Method: Composition-based stats.
 Identities = 166/443 (37%), Positives = 253/443 (57%), Gaps = 17/443 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R  + ++GCQMN YDS  +     S G+E V+S+++AD +++NTC +R K  EKV S LG
Sbjct: 2   RAHIITFGCQMNEYDSHLVASELVSLGWELVDSVEEADFVLVNTCAVRGKPVEKVRSLLG 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           ++R  K+        LL+ + GC+AQ +  + + R   V+V++GP     LPE L+    
Sbjct: 62  QLRKEKDR-----RGLLIGLMGCLAQLDEGQQMARKFGVDVLLGPGALTSLPEALK---- 112

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G +        ED  + +     G      ++A +TI  GC+  CT+C+VP TRG E+SR
Sbjct: 113 GNQRFWDLTFKEDLLDYIPPPPRG-----ALSAHVTIIRGCNHHCTYCIVPTTRGPEVSR 167

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
               ++ E   L   GV E+TLLGQNVN+  GK   G   +F++LL  + ++ G+ R+R+
Sbjct: 168 HPDLILKEIETLKKAGVVEVTLLGQNVNS-YGKDQPGFP-SFAELLRMVGQM-GIPRVRF 224

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
            TSHP + +D +I+A  +   +  Y+HLPVQSGSDR+L+ M R +   +Y + I RIR +
Sbjct: 225 LTSHPVNFTDDIIEAIAETPAITRYIHLPVQSGSDRVLRRMAREYRRAQYLERIRRIREI 284

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            PD  +S+D IVGFPGET++DF+ T+ L D++GY QA+ F YSPR GTP     + +   
Sbjct: 285 LPDAVLSTDIIVGFPGETEEDFQETLSLYDEVGYDQAYMFIYSPRPGTPAYKHFQDLPRE 344

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445
           VK ERL  L +K +E     N   VG+ +EVL+    KE+G + G       V++ +   
Sbjct: 345 VKVERLQRLIEKQKEWSYRRNLEWVGKTVEVLVRGVAKEEGYVQGHDRGNHPVLVPAHQA 404

Query: 446 NIGDIIKVRITDVKISTLYGELV 468
               + +V I       L+GE+V
Sbjct: 405 PTPGLYQVEIKQATPHLLFGEVV 427


>gi|296133939|ref|YP_003641186.1| RNA modification enzyme, MiaB family [Thermincola sp. JR]
 gi|296032517|gb|ADG83285.1| RNA modification enzyme, MiaB family [Thermincola potens JR]
          Length = 445

 Score =  413 bits (1062), Expect = e-113,   Method: Composition-based stats.
 Identities = 148/446 (33%), Positives = 237/446 (53%), Gaps = 17/446 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++    + GC++N Y++  +  +F  QGY+ V   D AD+ V+NTC +      K    +
Sbjct: 2   KKVAFHTLGCKVNQYETEALASLFRRQGYQVVEFSDKADVYVINTCTVTHLGDRKSRQMI 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R +       +   D +V V GC AQ    E+      V++V+G     ++ E +E  +
Sbjct: 62  RRAK-------RNNPDAIVAVMGCYAQTSPGEV-TAIEGVDLVIGTSDRSKVVECVEDFK 113

Query: 145 FGKRVVDT--DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
                V+   D     +FE L ++D     +    AFL IQEGC+ FCT+C++PY RG  
Sbjct: 114 RQDTPVNLVKDIMQAREFEELPVLDY----ESRTRAFLKIQEGCNNFCTYCIIPYARGPV 169

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR    V+ EA +L+  G  EI L G ++ A  G+  D +    + L+  L+ IKGL R
Sbjct: 170 RSRKRDNVITEAERLVGEGFREIVLTGIHIGA-YGRDRD-DGYDLAALVADLARIKGLRR 227

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LR  +  P D++  LI    D  V+  +LHLP+QSG D +L+ MNR++  +E+ ++++ I
Sbjct: 228 LRLGSVEPEDVTPHLIATMADNRVICRHLHLPLQSGDDAVLEKMNRKYNTHEFTRLVNSI 287

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R++  DIAI++D IVGFPGETD+ F  T + V  +G+++   FKYSPR GTP +N   QV
Sbjct: 288 RAMVDDIAITTDIIVGFPGETDEQFDNTYNYVKALGFSRLHVFKYSPRKGTPAANFPGQV 347

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GRSPWLQSVVLN 441
               K ER   L +  +E    F    +G+ +EVL+E+  +     + G +    +V   
Sbjct: 348 PAETKEERSSRLIELGKEMGREFARRFLGREMEVLVEQRLEADLHYMEGLTDNYLAVAFP 407

Query: 442 SKNHNIGDIIKVRITDVKISTLYGEL 467
             N   G+ + V++T VK   ++GE+
Sbjct: 408 GGNELKGEFVTVKLTSVKEEHVFGEV 433


>gi|152976740|ref|YP_001376257.1| RNA modification protein [Bacillus cereus subsp. cytotoxis NVH
           391-98]
 gi|152025492|gb|ABS23262.1| RNA modification enzyme, MiaB family [Bacillus cytotoxicus NVH
           391-98]
          Length = 450

 Score =  413 bits (1062), Expect = e-113,   Method: Composition-based stats.
 Identities = 138/449 (30%), Positives = 239/449 (53%), Gaps = 21/449 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
                + GC++N Y++  +  +F   GYERV+    AD+ V+NTC +     +K    + 
Sbjct: 3   TVAFHTLGCKVNHYETEAIWQLFKQSGYERVDFEKTADVYVVNTCTVTNTGDKKSRQVIR 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R        ++   D ++ V GC AQ    EI+   P V++VVG Q   ++ + +E+ R 
Sbjct: 63  RA-------VRHNPDAVICVTGCYAQTSPAEIMA-IPGVDIVVGTQDREKMLDYIEQYRQ 114

Query: 146 GKRVVDTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            ++ ++   ++     +E L +            A L IQEGC+ FCTFC++P+ RG+  
Sbjct: 115 ERQPINAVRNIMKTRVYEELDVP----YFTDRTRASLKIQEGCNNFCTFCIIPWARGLMR 170

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKGLVR 262
           SR   +V+ +A++L+D G  EI L G +     G G D +    + LL  + +E+KGL R
Sbjct: 171 SRDGKEVIKQAQQLVDAGYKEIVLTGIHTG---GYGEDMKDYNLAGLLRDMEAEVKGLKR 227

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LR ++     +SD +I+      V++ +LH+P+QSGS+ +LK M R++T   +++ ++R+
Sbjct: 228 LRISSIEASQISDEVIEVLDKSKVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLNRL 287

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           +   P +AI+SD IVGFPGET+++F  T + + +  +++   F YS R GTP + M +Q+
Sbjct: 288 KEALPGLAITSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQI 347

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK---HGKEKGKLVGRSPWLQSVV 439
            E VK ER+  L +   +    +     G+++E++ E+    G  +G  VG +     VV
Sbjct: 348 PEEVKNERVHRLIELSNQLAKEYASQFEGEVLEIIPEEPFKEGDREGLYVGYTDNYLKVV 407

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG ++KV+IT        G+ V
Sbjct: 408 FEGSEELIGKLVKVKITKAGYPYNEGQFV 436


>gi|225573635|ref|ZP_03782390.1| hypothetical protein RUMHYD_01829 [Blautia hydrogenotrophica DSM
           10507]
 gi|225039003|gb|EEG49249.1| hypothetical protein RUMHYD_01829 [Blautia hydrogenotrophica DSM
           10507]
          Length = 445

 Score =  413 bits (1062), Expect = e-113,   Method: Composition-based stats.
 Identities = 133/449 (29%), Positives = 220/449 (48%), Gaps = 18/449 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC  N+ DS  M  +   +GYE  +   +AD+I +NTC     A E+    + 
Sbjct: 2   KVLFISLGCDKNLVDSEEMLGLLRDRGYEITDDETEADVIAINTCCFIHDAKEESIQSIL 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +        K+G   +++V GC+AQ   +EI +  P V+VV+G  ++ ++ + L+ A  
Sbjct: 62  EMAE----YRKQGRCKVLLVTGCMAQRYQKEIRQEIPEVDVVLGTTSFEKIVDALDSAFR 117

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGY-NRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
           G       Y   +  + L +V         G   +L I EGCDK CT+C++P  RG   S
Sbjct: 118 G-----IPYEDFESIDYLPMVSADRILTTGGYYGYLKIAEGCDKHCTYCIIPSLRGKFRS 172

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
             + +++ +A K+   GV E+ L+ Q      G  L G+K +   LL  L +I G+  +R
Sbjct: 173 YPMERLLKQAEKMAQQGVRELILVAQETT-LYGTDLYGKK-SLHRLLEELCKITGIYWIR 230

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
               +P ++   L++       +  YL LP+Q  SDRILK M RR +  +  +I+  +R 
Sbjct: 231 VLYCYPEEIYPELVEVIAREPKVCHYLDLPIQHASDRILKRMGRRTSKKQLVEIVRTLRE 290

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             PDI + +  I GFPGET +D    M+ VD + + +   F YSP   TP + M  Q+ E
Sbjct: 291 KIPDIVLRTTLITGFPGETQEDHEELMEFVDTMEFDRLGVFTYSPEENTPAAVMKAQISE 350

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVL 440
            +K +R   L +  +E  +   ++ +GQ++ V+IE    ++   VGR+    P +   + 
Sbjct: 351 EIKEDRKAELMELQQEISLERGNSRIGQVLLVMIEGKVADENAYVGRTYADAPNVDGYIF 410

Query: 441 NSKNHNI--GDIIKVRITDVKISTLYGEL 467
                 +  GD +KVR+T      L GE+
Sbjct: 411 VQSPEMLMSGDFVKVRVTGALEYDLIGEI 439


>gi|317970572|ref|ZP_07971962.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Synechococcus
           sp. CB0205]
          Length = 461

 Score =  413 bits (1062), Expect = e-113,   Method: Composition-based stats.
 Identities = 171/451 (37%), Positives = 259/451 (57%), Gaps = 23/451 (5%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           +++ ++GCQMN  DS RM  +  S GY    +  +ADL++ NTC IR+ A +KVYS+LGR
Sbjct: 18  YWITTFGCQMNKADSERMAGILESMGYSEATAELEADLVLYNTCTIRDNAEQKVYSYLGR 77

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
               K    +   +L +VVAGCVAQ EGE +LRR P +++V+GPQ   RL  LL +   G
Sbjct: 78  QAQRK----RVNPNLTLVVAGCVAQQEGESLLRRVPELDLVMGPQHANRLDVLLSQVEQG 133

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           ++VV T+       E ++       R   +  ++ +  GC++ CT+CVVP  RG E SR 
Sbjct: 134 QQVVATEE--HHILEDITTAR----RDSSICGWVNVIYGCNERCTYCVVPSVRGKEQSRL 187

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG------EKCTFSDLLYSLSEIKGL 260
              +  E   L   G  EITLLGQN++A  G+ L G       + T +DLL  + +++G+
Sbjct: 188 PEAIKLEMEGLAAQGFKEITLLGQNIDA-YGRDLPGITPEGRRQHTLTDLLQFVHDVEGI 246

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+ TSHPR  ++ LI A  DL  +  + H+P QSG D +LK+M R +T   YR+IID
Sbjct: 247 ERIRFATSHPRYFTERLIDACADLPKVCEHFHVPFQSGDDDVLKAMARGYTIDRYRRIID 306

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           RIR   PD +IS+D IV FPGETD  +R T+DL+D+IG+ Q  +  YSPR  TP ++   
Sbjct: 307 RIRDRMPDASISADVIVAFPGETDAQYRRTLDLIDEIGFDQVNTAAYSPRPNTPAADWPN 366

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVV 439
           Q+ E VK +RL  +   +  +    +    G+  +VL+E    K+  +++GR+   +   
Sbjct: 367 QLSEEVKVQRLQEINALVERKAKERSARYAGRTEQVLVEGVNPKQADQVMGRTRTNRLTF 426

Query: 440 LNSKNH-----NIGDIIKVRITDVKISTLYG 465
             +          GD+++VRI +V+  +L G
Sbjct: 427 FPAARASEGHWQAGDLVEVRIEEVRAFSLSG 457


>gi|227499453|ref|ZP_03929564.1| tRNA 2-methylthioadenine synthetase [Anaerococcus tetradius ATCC
           35098]
 gi|227218515|gb|EEI83758.1| tRNA 2-methylthioadenine synthetase [Anaerococcus tetradius ATCC
           35098]
          Length = 448

 Score =  413 bits (1062), Expect = e-113,   Method: Composition-based stats.
 Identities = 162/449 (36%), Positives = 259/449 (57%), Gaps = 19/449 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + + + ++GCQMN +DS R+  +  S GY+++   + AD I+ NTC +RE A  K+Y  +
Sbjct: 14  KTYNITTFGCQMNEHDSERISYILESLGYKKIQDRNKADFILFNTCLVRENAELKLYGQV 73

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAE--GEEILRRSPIVNVVVGPQTYYRLPELLER 142
             ++ LK    KE  D ++ V+GC+ Q     + I+ +   V+++ G +    L +L+ R
Sbjct: 74  SSLKKLK----KENPDKIIAVSGCMMQTSTARQVIIDKHKEVDIIFGTKNINSLADLIFR 129

Query: 143 A-RFGKRVVDTD-YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
                +RV+D    +V+D F         YN      A++ I  GCD FC++C+VP +RG
Sbjct: 130 YLETNERVIDISTDNVKDDF-------VYYNTPNDFQAYVNIMTGCDNFCSYCIVPESRG 182

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E SR  S ++DE   L+  G  EITLLGQNVN+  G   D +  TF  LL  +S I+GL
Sbjct: 183 REESRRPSSILDEVENLVSRGYKEITLLGQNVNS-YGNRADFD-MTFPALLEKISHIEGL 240

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            RLR+TTSHP+D+SD LI    + D +  Y HLP+QSGS ++LK MNR++   +Y +   
Sbjct: 241 KRLRFTTSHPKDLSDELIDVIKNNDNICNYFHLPLQSGSSKVLKDMNRKYDQEKYLERAL 300

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R   P IAIS+D IVG+P ET++DF+ T+ + +K+ Y  A++FK+SPR  T  + + +
Sbjct: 301 KLREEIPSIAISTDIIVGYPTETEEDFQETLKVCEKVKYDSAYTFKFSPRPKTRAAKL-K 359

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVV 439
            +D+ +  +R   L   +       N+  +G+ +EVL+E   K   + L GR+   + V 
Sbjct: 360 TIDDAIVQDRFDRLLDTIYPIFNKKNEEYIGRTVEVLLESESKNNPQILTGRTDTFKLVH 419

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
           + +    IG  +KV+ITD    T+ G+L+
Sbjct: 420 VKADKKLIGQFVKVKITDNTSFTISGDLI 448


>gi|319651610|ref|ZP_08005737.1| hypothetical protein HMPREF1013_02349 [Bacillus sp. 2_A_57_CT2]
 gi|317396677|gb|EFV77388.1| hypothetical protein HMPREF1013_02349 [Bacillus sp. 2_A_57_CT2]
          Length = 450

 Score =  413 bits (1062), Expect = e-113,   Method: Composition-based stats.
 Identities = 134/448 (29%), Positives = 237/448 (52%), Gaps = 21/448 (4%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
               + GC++N Y++  +  +F   GYER +    +D+ V+NTC +     +K    + R
Sbjct: 4   VAFHTLGCKVNHYETEAIWQLFKEAGYERTDFESVSDVYVINTCTVTNTGDKKSRQVIRR 63

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
                   I++  D ++ V GC AQ    EI+   P V++VVG Q   ++ E +E+ +  
Sbjct: 64  A-------IRKNPDAVICVTGCYAQTSPAEIMA-IPGVDIVVGTQDRVKMLEYIEQYKQE 115

Query: 147 KRVVDTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
           ++ ++   ++     +E L +            A L IQEGC+ FCTFC++P+ RG+  S
Sbjct: 116 RQPINGVGNIMKNRVYEELDVP----AFTDRTRASLKIQEGCNNFCTFCIIPWARGLMRS 171

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKGLVRL 263
           R   +V+ +A++L+D G  EI L G +     G G D +    + LL  L +++KGL RL
Sbjct: 172 RDPKEVIRQAQQLVDAGYKEIVLTGIHTG---GYGEDMKDYNLAMLLRDLEAQVKGLKRL 228

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R ++     ++D +I+      V++ +LH+P+QSGS+ +LK M R++T   + + ++R++
Sbjct: 229 RISSIEASQITDEVIEVMDQSKVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFAERLERLK 288

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              P +A++SD IVGFPGET+++F  T + + +  +++   F YS R GTP + M +Q+D
Sbjct: 289 EALPGLAVTSDVIVGFPGETEEEFMETYNFIKEHKFSELHVFPYSKRTGTPAARMDDQID 348

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK---HGKEKGKLVGRSPWLQSVVL 440
           E +K ER+  L     +    +     G+++EV+ E+      +    VG +     VV 
Sbjct: 349 EEIKNERVHRLIALSDQLAKEYASQYEGEVLEVIPEESFKESSDSSLFVGYTDNYLKVVF 408

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
            +    +G I+KV+IT        G+ V
Sbjct: 409 PAAEEMVGQIVKVKITKAGYPYNEGQFV 436


>gi|317490506|ref|ZP_07948986.1| MiaB family RNA modification enzyme [Eggerthella sp. 1_3_56FAA]
 gi|316910399|gb|EFV32028.1| MiaB family RNA modification enzyme [Eggerthella sp. 1_3_56FAA]
          Length = 452

 Score =  413 bits (1062), Expect = e-113,   Method: Composition-based stats.
 Identities = 168/450 (37%), Positives = 253/450 (56%), Gaps = 15/450 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
            F ++++GCQMN +DS R+  M    G  +V++++DAD++   TC +RE A  ++Y  + 
Sbjct: 2   TFCIRTFGCQMNKHDSERIAGMLEGMGALQVDAIEDADIVAFMTCCVREAADTRLYGQVA 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA-R 144
            ++N+           +V V GC+ Q +GE+++     ++VV G      LP LLE A  
Sbjct: 62  SLKNVPLRAGTPLSKRIVAVGGCIGQRDGEKLVDELKHLDVVFGTHNLGSLPRLLEAALE 121

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G   V+   +       L        R+    A+L I  GC+ FC++C+VPY RG E S
Sbjct: 122 EGGHQVEVLDAASSFPTELPTA-----REHEWAAWLPITIGCNNFCSYCIVPYVRGREKS 176

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R L  +V EA + +  GV EITLLGQNVN+  G+ L G    F+ +L +L +  G+ RLR
Sbjct: 177 RPLEDIVAEAERYVAAGVKEITLLGQNVNS-YGRDLYGSP-RFAQVLDALDQ-TGIERLR 233

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           + TSHP+D++D ++     L  LMP LHLPVQSGSD +L +MNRR+T   YR ++ ++R 
Sbjct: 234 FATSHPKDLNDEVVGRFATLRSLMPALHLPVQSGSDAVLAAMNRRYTRDHYRALVAKLRD 293

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             PDIA+S+D IVGFPGET  DF  T  LVD++GY Q F+F YS R GTP ++M +    
Sbjct: 294 AVPDIALSTDIIVGFPGETAKDFEDTYRLVDEVGYHQVFTFIYSKREGTPAASMDDDTPR 353

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVLNSK 443
            V  +R   L   ++++    N   +G  ++VL+E   K   + L G+SP  Q+V   + 
Sbjct: 354 EVIQQRFDRLVDLVQQRAFEANQRDLGSTVDVLVEGASKRDERLLAGKSPKNQTVHAPAP 413

Query: 444 -----NHNIGDIIKVRITDVKISTLYGELV 468
                    G  ++VR+ + K   L GE+V
Sbjct: 414 AGVRAEDLAGSTVRVRVDEAKTWYLAGEIV 443


>gi|283768308|ref|ZP_06341220.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bulleidia extructa W1219]
 gi|283104700|gb|EFC06072.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bulleidia extructa W1219]
          Length = 480

 Score =  413 bits (1062), Expect = e-113,   Method: Composition-based stats.
 Identities = 171/448 (38%), Positives = 256/448 (57%), Gaps = 16/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++++VK+YGCQ NV D   +  M    G+      + AD+I+ NTC IR  A EKV + +
Sbjct: 43  KKYYVKTYGCQANVRDGESLSGMLEMMGFTYAEVPEKADVILFNTCAIRRAAEEKVMAEI 102

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G ++ LK    KE  +++ V+ GC+AQ +   EE+L++ P ++++ G    YR P LL+ 
Sbjct: 103 GNLKYLK----KEKPNIIFVLCGCMAQEKDVVEELLQKHPQLDLIFGTHNLYRFPALLQE 158

Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
               K      YS E +  E L +      R      F+ I  GCDKFCT+C+VPYTRG 
Sbjct: 159 VMVKKIQKVEVYSQEGEVVESLPV-----KRSMSSKGFVNIMYGCDKFCTYCIVPYTRGK 213

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR +  +++E   L  +G  E+ LLGQNVNA  GK L  E   F+DLL ++S+  G+ 
Sbjct: 214 ERSRRMKDILEEVSALKKSGRKEVVLLGQNVNA-YGKDLHMED-GFTDLLRAISD-TGIE 270

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+ TSHPRD    LI    +   +MP+LH PVQSGS+ ILK M R +T   Y  + D 
Sbjct: 271 RIRFYTSHPRDYRSSLIDLMAERKNIMPFLHFPVQSGSNEILKRMARGYTVEHYISLYDE 330

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +    P++  ++D IVGFPGE+D+DF  TM+LV+   Y  A++F YSPR+GTP ++M + 
Sbjct: 331 MMKKIPNMTFTTDIIVGFPGESDEDFEKTMNLVEHCQYDMAYTFLYSPRVGTPAASMTDS 390

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440
           + + VK  RL  L ++LRE     N   +G+I+ VL E   K+  K   G +   + V  
Sbjct: 391 ISKEVKKARLQRLNQRLREIAAKKNKVYLGRIVRVLCEGISKKNEKIYAGYTEDNKLVNF 450

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
           +   + + +I+ V IT+    TL G ++
Sbjct: 451 SCPWNCMDEIVDVEITETHSYTLNGRVL 478


>gi|331001788|ref|ZP_08325310.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Lachnospiraceae oral
           taxon 107 str. F0167]
 gi|330412762|gb|EGG92145.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Lachnospiraceae oral
           taxon 107 str. F0167]
          Length = 475

 Score =  413 bits (1061), Expect = e-113,   Method: Composition-based stats.
 Identities = 159/457 (34%), Positives = 263/457 (57%), Gaps = 16/457 (3%)

Query: 15  SQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIRE 74
           S+ +D+   P  + V ++GCQMN  DS ++  +    GY    + +DADL++ NTC +RE
Sbjct: 26  SRAMDKGAYP-TYKVVTFGCQMNARDSEKLSGILSGIGYTEAENEEDADLVLFNTCTVRE 84

Query: 75  KAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGE--EILRRSPIVNVVVGPQT 132
            A +++Y  +G+++  K        D++V + GC+ Q   E  +I +    V++V G   
Sbjct: 85  NANDRLYGRVGQLKKSKEK----NHDMIVGICGCMMQEAEEVEKIKKSYRHVDLVFGTHN 140

Query: 133 YYRLPELL-ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCT 191
            Y+L E+L +     K++++   S +   E+L        R+    + + I  GC+ FC+
Sbjct: 141 IYKLAEILFDHLTTKKQIINVMESADMIVEKLP-----NKRQYAFKSGVNITFGCNNFCS 195

Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLL 251
           +C+VPY RG E SR   +++DE + L+ +GV EI LLGQNVN+  G+GL+ E+ +F+ LL
Sbjct: 196 YCIVPYVRGRERSRKPEEIIDEIKTLVADGVKEIMLLGQNVNS-YGRGLE-EEISFAGLL 253

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
             ++EI+GL RLR+ T HP+D+SD +I+   +   +  +LHLP+QSGS  ILK MNR +T
Sbjct: 254 ERIAEIEGLERLRFMTPHPKDLSDEVIEVMKNNKKICKHLHLPLQSGSSAILKKMNRVYT 313

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
             +Y  ++ RI++  PDI++++D IVGFPGET+ DF  T+++V ++ Y  AF+F YS R 
Sbjct: 314 KEDYLNLVKRIKTAIPDISLTTDIIVGFPGETEGDFLDTLEVVKEVRYDSAFTFIYSKRS 373

Query: 372 GTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVG 430
           GTP + M EQVD     +R   L K +++          G+ +  L+E   +  +G L G
Sbjct: 374 GTPAAKMEEQVDPKAIKDRFDRLLKTVQDIAAENTKKNEGKCMPALVEGKNEHMEGYLTG 433

Query: 431 RSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
           +     +V    +   IG+I+ V + + K     G +
Sbjct: 434 KLENNLTVHFKGQERLIGEIVDVILDEAKGFYYMGHI 470


>gi|310821577|ref|YP_003953935.1| tRNA-i(6)a37 thiotransferase enzyme miab [Stigmatella aurantiaca
           DW4/3-1]
 gi|309394649|gb|ADO72108.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Stigmatella aurantiaca
           DW4/3-1]
          Length = 467

 Score =  413 bits (1061), Expect = e-113,   Method: Composition-based stats.
 Identities = 182/449 (40%), Positives = 264/449 (58%), Gaps = 17/449 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +R+F+ ++GCQMNV DSLRM +      Y    + D+ADLI+LNTC IREKA +K+ S L
Sbjct: 2   KRYFIHTFGCQMNVNDSLRMSEALAQIAYAPTPTPDNADLIILNTCAIREKAEDKMLSAL 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR R +K          L+ V GCVAQ E + +L++ P V+ V GP    +LPE++ R  
Sbjct: 62  GRYRPVK-----VSRGALIGVGGCVAQQEKDRLLKKVPYVDFVFGPDNIGKLPEIITRVS 116

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
             +  V     V+ +       D   +R + VT F+T+ +GCD  C+FCVVP+TRG E+S
Sbjct: 117 QERERVVETAFVDSEEYVFPRADPETSRGK-VTEFVTVMKGCDNVCSFCVVPHTRGREVS 175

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R+   V+ E   L   G+ E+TL+GQNVN++RG        +F+ LL   +E+ G+ R+R
Sbjct: 176 RAFPDVLTEVADLARVGLREVTLIGQNVNSYRG------GISFAQLLLRTAEVPGIERVR 229

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +TTSHP D+SD LI A      + P+ HLPVQ GSDRILK M R +T  +Y + ++++R+
Sbjct: 230 FTTSHPHDLSDELIDAFRTQPKIAPHFHLPVQCGSDRILKMMRRDYTVVQYLERLEKLRA 289

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ--- 381
            RP IA+++D IVGFPGET++DF  TM L +++ Y   FSF +SPR  T  +   +    
Sbjct: 290 ARPGIAVTTDIIVGFPGETEEDFEMTMQLTEQVRYESQFSFIFSPRPKTGAALREKDWGS 349

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVL 440
           V   VK  RL  LQK  R+       + VG  +EVL+E H K + GK  GRSP  ++V  
Sbjct: 350 VPHEVKIARLERLQKVQRKICGEIAVSQVGLEVEVLVEGHSKYDAGKRFGRSPENRTVNF 409

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELVV 469
           +  +   G I+KV +     + L G+ + 
Sbjct: 410 DG-DAPAGAIVKVLVDRATPNHLMGKQLA 437


>gi|269795611|ref|YP_003315066.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Sanguibacter keddieii DSM
           10542]
 gi|269097796|gb|ACZ22232.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Sanguibacter keddieii DSM
           10542]
          Length = 557

 Score =  413 bits (1061), Expect = e-113,   Method: Composition-based stats.
 Identities = 164/480 (34%), Positives = 254/480 (52%), Gaps = 49/480 (10%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDAD----LIVLNTCHIREKAAEKV 80
           + + V++ GCQMNV+DS  M  M    GY+R  +   A     ++V+NTC +RE AA ++
Sbjct: 28  RTYVVRTLGCQMNVHDSEHMSGMLEQAGYQRATAEAAARDEADVVVINTCAVRENAATRL 87

Query: 81  YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140
           Y  LG++   K    K    + + V GC+AQ +   I+ R+P V+VV G      LP LL
Sbjct: 88  YGNLGQLAGAK----KRRAGMQIAVGGCLAQKDRSTIVERAPWVDVVFGTHNLDALPVLL 143

Query: 141 ERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           ERAR  +   V+   S++     L        R+     +++I  GC+  CTFC+VP+ R
Sbjct: 144 ERARHNEAAQVEIAESLQVFPSTLPT-----RRESIYAGWVSISVGCNNTCTFCIVPHLR 198

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G E  R   QV+ E   L+  G  E+TLLGQNVN++  +   G++  F+ LL +   I G
Sbjct: 199 GKERDRRPGQVLAEVEALVAQGAVEVTLLGQNVNSYGVEF--GDRGAFAHLLRACGRIDG 256

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           L R+R+T+ HP   +D +I A  +   +MP LH+P+QSGSDR+L++M R + +  +  I+
Sbjct: 257 LERVRFTSPHPAAFTDDVIDAMAETHNVMPQLHMPLQSGSDRVLRAMRRSYRSDRFLGIL 316

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
           DR+R+  P+ AI++D IVGFPGET+DDF  T+ +V+   +A AF+F+YSPR GTP + + 
Sbjct: 317 DRVRAAIPEAAITTDLIVGFPGETEDDFAETLRVVEASRFASAFTFQYSPRPGTPAATLE 376

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKG---KLVGRSPWL 435
           +Q+ + V  ER   L           +   VG+ +EVL+ E  G++ G   +L GR+   
Sbjct: 377 DQLPKEVVQERYERLMALQDAVSARESARQVGRTVEVLVTEGAGRKDGATHRLTGRAEDN 436

Query: 436 QSVVLNSKNHN-----------------------------IGDIIKVRITDVKISTLYGE 466
           + V L    H                               GD++ V++T      L  +
Sbjct: 437 RLVHLAVPAHLSEHLAGGSPVETGALDPRLAETLDPDVPRPGDMVTVQVTGSAPYHLVAD 496


>gi|258592142|emb|CBE68447.1| conserved protein of unknown function [NC10 bacterium 'Dutch
           sediment']
          Length = 438

 Score =  413 bits (1061), Expect = e-113,   Method: Composition-based stats.
 Identities = 176/449 (39%), Positives = 252/449 (56%), Gaps = 16/449 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           +P +  + ++GCQ N  DS R+  +  ++GY      ++ADLI+LNTC IREKA  KVYS
Sbjct: 1   MP-KLKLITFGCQANDLDSERITGLLHNEGYTLTECEEEADLILLNTCAIREKAEHKVYS 59

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            LG  + LK  R      L + + GCVAQ EG+ +L R P ++ VVGP     +P LL+ 
Sbjct: 60  RLGSFQVLKRERA----GLKIGICGCVAQQEGQVLLNRFPYLDFVVGPAQLTAIPSLLQT 115

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
               + VV T             VD    R+  + A+++I EGCD FCTFCVVP+TRG E
Sbjct: 116 GAT-RSVVTT-----RAPGYSYPVDAPVQRQSNIRAWVSIMEGCDHFCTFCVVPFTRGRE 169

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE-IKGLV 261
            SR   ++V+E R L   G  E+TLLGQ VN+  G+ L     +F +LL  + + +   +
Sbjct: 170 RSRPPQEIVEEIRGLKRQGYREVTLLGQTVNS-YGRKL-TPPISFVELLRQIDQLVDSQM 227

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+T+ HP D++D L  A   L  L   +HLPVQSGSDRIL  M R HT  EY + I  
Sbjct: 228 RVRFTSPHPLDVTDELAAAIAALPSLCEQIHLPVQSGSDRILYQMKRGHTRDEYLKKIAL 287

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R+  P+IAI++D IVGFPGET++DF+AT+DL+ ++G+  AF FKYSPR  T    M +Q
Sbjct: 288 LRARTPEIAITTDVIVGFPGETEEDFQATLDLMQEVGFDGAFMFKYSPRPHTEAERMPDQ 347

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG--KLVGRSPWLQSVV 439
           + E  K   L      +    +  N A +G+ +EVL+ +   +    +  GR+   + V 
Sbjct: 348 LSEEAKGRWLEQALALMNRLSLERNRAYLGRTVEVLVNREDAKGNTDRHTGRTRQNKIVH 407

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
              +    G  + V IT      L GE+V
Sbjct: 408 FGGEGVVDGSFVSVAITGATPLYLQGEMV 436


>gi|153853286|ref|ZP_01994695.1| hypothetical protein DORLON_00681 [Dorea longicatena DSM 13814]
 gi|149754072|gb|EDM64003.1| hypothetical protein DORLON_00681 [Dorea longicatena DSM 13814]
          Length = 440

 Score =  413 bits (1061), Expect = e-113,   Method: Composition-based stats.
 Identities = 142/448 (31%), Positives = 225/448 (50%), Gaps = 16/448 (3%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
            F  S GC  N+ DS  M  +  ++GY+ V+    AD++V+NTC     A E+    +  
Sbjct: 3   IFFVSLGCDKNLVDSEVMLGLLDAKGYQIVDDETLADVMVINTCCFIHDAKEESIQTILD 62

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           +   K      G    +VV GC+AQ   +EI+   P V+VV+G  +Y ++ E +E A  G
Sbjct: 63  MARYKEE----GRLKALVVTGCLAQRYKQEIIDEIPEVDVVLGTTSYDKIVEAVEEALEG 118

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           K  V+    + D                G  A+L I EGCDK CT+C++P  RG   S  
Sbjct: 119 KSEVE----LADINALPLPETKRLVTTGGHYAYLKIAEGCDKHCTYCIIPKVRGNYRSVP 174

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
           + +++ EA++L D GV E+ L+ Q      G+ + GEK +   LL  L +IKG+  +R  
Sbjct: 175 MERLIKEAQELADQGVKELILVAQETT-VYGQDIYGEK-SLHKLLKELCQIKGIRWIRLL 232

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
             +P ++ D LI+   +   +  YL LP+Q  SD ILK M RR +  +    I ++R   
Sbjct: 233 YCYPEEIDDNLIQVMKEEPKICHYLDLPIQHASDAILKRMGRRTSKQQLIDTITKLRKEI 292

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           PDIA+ +  I GFPGET +     M+ VD++ + +   F YSP   TP + M +Q+DE V
Sbjct: 293 PDIALRTTLITGFPGETQEQHEEVMEFVDEMEFERLGVFTYSPEEDTPAATMPDQIDEEV 352

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVL-- 440
           K +R   + +  +E      +  +G+ + V+IE    ++   VGR+    P +  ++   
Sbjct: 353 KEDRQADIMELQQEIVFDQAEDMIGKEVLVMIEGKVADENAYVGRTYRDAPNVDGLIFVN 412

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
             +    GD  KV++T      L GEL+
Sbjct: 413 TDEELMTGDFAKVKVTGAAEYDLIGELI 440


>gi|254467785|ref|ZP_05081191.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [beta proteobacterium
           KB13]
 gi|207086595|gb|EDZ63878.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [beta proteobacterium
           KB13]
          Length = 438

 Score =  413 bits (1061), Expect = e-113,   Method: Composition-based stats.
 Identities = 181/448 (40%), Positives = 281/448 (62%), Gaps = 12/448 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQG-YERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++ F+K+YGCQMN YDS ++ ++      Y+  + ++DADL+VLNTC IREKA +KVY
Sbjct: 1   MIKKIFIKTYGCQMNEYDSDQISNLMGKMDSYQSTDQVEDADLVVLNTCSIREKAEDKVY 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL- 140
             LGR+R LKN        + + V GCVA  EGE I++R+P V++V GPQT +++P LL 
Sbjct: 61  GQLGRLRELKNK----KPSMKIAVGGCVASQEGENIIKRAPYVDLVFGPQTLHKIPSLLK 116

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           E  R G   +D  +   +KF++L        +  G +++++I EGC K+C+FCVVPYTRG
Sbjct: 117 ENERVGSAQIDISFPAIEKFDQLPQA-----KSNGPSSYVSIMEGCSKYCSFCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR    +++E  +L   GV E+ LLGQNVNA+R K   G +  F++L+  +SEI  +
Sbjct: 172 EEVSRPAEDIIEEILRLTQQGVIELNLLGQNVNAYRYKDKKGFEYDFAELINLISEIDEI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+TTSHP +M+D LI+   +   L  ++HLP+QSGSDRIL +M R +   EY+QII 
Sbjct: 232 NRIRFTTSHPNEMNDTLIECFQNNHKLANFIHLPIQSGSDRILSAMKRNYLYLEYKQIIK 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++++  P+I ISSDFIVGFPGETD D + T+  + +I +  ++SF YS R GTP S + +
Sbjct: 292 KLKAASPNILISSDFIVGFPGETDQDHQQTIKAIKEIDFDYSYSFLYSARPGTPASYLKD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440
             +E +K  RL  +Q  + EQ  +   A +     VLI++   ++    G++   + V +
Sbjct: 352 STNEEIKKNRLQEIQNLINEQGKNHTHALMNSEQRVLIDEKV-DEITFKGKTDNNRIVEI 410

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
            +K   +  ++KV++T      + GEL+
Sbjct: 411 KTKQDILNQMVKVKVTKTTNRRISGELI 438


>gi|15827471|ref|NP_301734.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Mycobacterium
           leprae TN]
 gi|221229948|ref|YP_002503364.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Mycobacterium
           leprae Br4923]
 gi|13432283|sp|Q49842|MIAB_MYCLE RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|13093021|emb|CAC31370.1| conserved hypothetical protein [Mycobacterium leprae]
 gi|219933055|emb|CAR71084.1| conserved hypothetical protein [Mycobacterium leprae Br4923]
          Length = 517

 Score =  413 bits (1061), Expect = e-113,   Method: Composition-based stats.
 Identities = 163/484 (33%), Positives = 259/484 (53%), Gaps = 42/484 (8%)

Query: 7   LIGVAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDD---AD 63
           +   A M           + + V++YGCQMNV+DS R+  +  + GY+R     D   AD
Sbjct: 2   VTRDAGMADDAATGST--RTYQVRTYGCQMNVHDSERLAGLLEAAGYQRAADEADVGDAD 59

Query: 64  LIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPI 123
           ++V NTC +RE A  ++Y  L  +   K    +   D+ + V GC+AQ +   +L ++P 
Sbjct: 60  VVVFNTCAVRENADNRLYGNLSHLAPRK----RNNPDMQIAVGGCLAQKDKHTVLSKAPW 115

Query: 124 VNVVVGPQTYYRLPELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTI 182
           V++V G      LP LL+RAR  K   V+   +++     L        R+    A+++I
Sbjct: 116 VDIVFGTHNLGSLPTLLDRARHNKVAQVEIVEALQHFPSSLPSA-----RESDYAAWVSI 170

Query: 183 QEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG 242
             GC+  CTFC+VP  RG E+ RS + ++ E   L+ +GV E+TLLGQNVNA+     D 
Sbjct: 171 SVGCNNSCTFCIVPSLRGKEVDRSPADILAEVEALVADGVLEVTLLGQNVNAYGVSFADP 230

Query: 243 ----EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
                + +F++LL S   I GL R+R+T+ HP + +  +I+A      + P LH+P+QSG
Sbjct: 231 ALARNRGSFAELLRSCGSIDGLERVRFTSPHPAEFTYDVIEAMAQTPNVCPSLHMPLQSG 290

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           SDR+L++M R +    Y  II ++R+  P  AI++D IVGFPGET++DF AT+D+V ++ 
Sbjct: 291 SDRVLRAMRRSYRVERYLGIIGQVRAAMPHAAITTDLIVGFPGETEEDFAATLDVVRQVR 350

Query: 359 YAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI 418
           +  AF+F+YS R GTP + +  Q+ + V  ER   L +   +  +  N   +G+I+E+L+
Sbjct: 351 FTAAFTFQYSKRPGTPAAELGGQLPKAVVQERYERLVELQEQICMEENRVLIGRIVELLV 410

Query: 419 -EKHGKE------------KGKLVG---RSPWLQSVVLNSKNHNIGDIIKVRITDVKIST 462
               G++             G+LV     +PW   V         GDII V +T+     
Sbjct: 411 TTGEGRKDARTARRTGRARDGRLVHFALDTPWEAQV-------RPGDIITVMVTEAAPHH 463

Query: 463 LYGE 466
           L  +
Sbjct: 464 LIAD 467


>gi|314933749|ref|ZP_07841114.1| Fe-S oxidoreductase [Staphylococcus caprae C87]
 gi|313653899|gb|EFS17656.1| Fe-S oxidoreductase [Staphylococcus caprae C87]
          Length = 448

 Score =  413 bits (1061), Expect = e-113,   Method: Composition-based stats.
 Identities = 138/436 (31%), Positives = 237/436 (54%), Gaps = 17/436 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
                + GC++N Y++  +  +F    Y+RV+   +AD+ V+NTC +     +K    + 
Sbjct: 3   TVAFHTLGCKVNHYETEAIWQLFKEADYDRVDFETNADVFVINTCTVTNTGDKKSRQIIR 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R        I++    +V V GC AQ    EI+   P V+VVVG Q  ++L + +++ + 
Sbjct: 63  RA-------IRQNPKAVVCVTGCYAQTSSAEIM-EIPGVDVVVGTQDRHKLLDYIDQFQE 114

Query: 146 GKRVVDT--DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            ++ ++   +      +E L +            A L IQEGC+ FCTFC++P+ RG+  
Sbjct: 115 ERQPINGVGNIMKNRTYEELEVP----YFTDRTRASLKIQEGCNNFCTFCIIPWARGLMR 170

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR   +VV++A +L+++G  EI L G +     G G D +    + LL  L EI+GL R+
Sbjct: 171 SRDPEKVVEQASQLVNSGYKEIVLTGIHTG---GYGQDLKNYNLAQLLRDLDEIEGLERI 227

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R ++     ++D +I+  G+ + ++ +LH+P+QSGSD +LK M R++T   + + +  + 
Sbjct: 228 RISSIEASQLTDEVIEVIGNSNKVVRHLHVPLQSGSDSVLKRMRRKYTMEHFSERLTELH 287

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              PD+A++SD IVGFPGET+++F+ T D + K  +++   F YSPR+GTP + M +Q+D
Sbjct: 288 KALPDLAVTSDVIVGFPGETEEEFQETYDFIVKHQFSELHVFPYSPRIGTPAARMDDQID 347

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
           E+VK ER+  L     +    +      +++EV+ E+ G+E   LVG +     V     
Sbjct: 348 ESVKNERVHKLIALSDQLAKEYASKFENEVLEVIPEEKGEEPNTLVGYADNYMKVQFEGD 407

Query: 444 NHNIGDIIKVRITDVK 459
              IG I+KV+I    
Sbjct: 408 ESLIGQIVKVKILKAD 423


>gi|33861861|ref|NP_893422.1| 2-methylthioadenine synthetase [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
 gi|81575722|sp|Q7V0F7|MIAB_PROMP RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|33640229|emb|CAE19764.1| conserved hypothetical protein [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
          Length = 464

 Score =  413 bits (1061), Expect = e-113,   Method: Composition-based stats.
 Identities = 168/453 (37%), Positives = 259/453 (57%), Gaps = 23/453 (5%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           +++ ++GCQMN  DS RM       GY R      ADL++ NTC IR+ A +KVYSFLG+
Sbjct: 21  YWITTFGCQMNKADSERMAGTLEKMGYSRAIDELKADLVLYNTCTIRDSAQQKVYSFLGK 80

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
               K+S  K    L +VVAGC+AQ EGE +LRR P +++++GPQ    L  LLER   G
Sbjct: 81  QVKRKHSTPK----LKLVVAGCLAQQEGESLLRRVPELDLIMGPQHVNNLENLLERVDLG 136

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
            +VV T    E+ F    I +    R   +  ++ I  GC++ C++CVVP  RG E SR 
Sbjct: 137 NQVVAT----EETFISEDITNP--RRDSSICGWVNIIYGCNERCSYCVVPSVRGKEQSRY 190

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG------EKCTFSDLLYSLSEIKGL 260
              +  E   L  N   E+TLLGQN++A  G+ L G      ++ + +DLLY + +++G+
Sbjct: 191 PDAIKSEIESLAHNNFKEVTLLGQNIDA-YGRDLPGTTKEGRKENSLTDLLYFIHDVEGI 249

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R++TSHP+  S  LI A  +LD +  + H+P QSG++ IL+ M R +T  +Y++II+
Sbjct: 250 KRIRFSTSHPKYFSKRLINACYELDKVCEHFHIPFQSGNNEILRLMARGYTIEKYKRIIE 309

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
            IR + P+ +I++D IV FPGET+  +R T+ L+  IG+ Q  +  YSPR  TP +    
Sbjct: 310 NIRQLMPNASITADAIVAFPGETETQYRETLKLISDIGFDQVMTAAYSPRPNTPAAFWDN 369

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSVV 439
           Q+ E VK ERL  + + +       N   +  I  VLIE  + K   +++GR+   +   
Sbjct: 370 QIPEEVKKERLKEINELVETTSRKRNQRYLNNIESVLIEGLNPKNNAQMMGRTRTNRLTF 429

Query: 440 LNSK-----NHNIGDIIKVRITDVKISTLYGEL 467
           +        N++ GD I V+IT+ +  +L G++
Sbjct: 430 VEISKNIEFNYSYGDEINVKITEARSFSLSGQI 462


>gi|56963428|ref|YP_175159.1| 2-methylthioadenine synthetase [Bacillus clausii KSM-K16]
 gi|56909671|dbj|BAD64198.1| 2-methylthioadenine synthetase [Bacillus clausii KSM-K16]
          Length = 445

 Score =  413 bits (1061), Expect = e-113,   Method: Composition-based stats.
 Identities = 135/448 (30%), Positives = 240/448 (53%), Gaps = 20/448 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
                + GC++N Y++  +  +F  +GYE+V     AD+ V+NTC +     +K    + 
Sbjct: 3   TVAFHTLGCKVNHYETEAIWQLFKQEGYEKVEFEQTADVYVINTCTVTNTGDKKSRQVIR 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R        I++  D ++ V GC AQ    E++   P V++VVG Q   ++   +++ + 
Sbjct: 63  RA-------IRKNPDAVICVTGCYAQTSPAEVMA-IPGVDIVVGTQDRSKMLGYIDQYKK 114

Query: 146 GKRVVDTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            ++ ++   ++     +E L +     +      A L IQEGC+ FCTFC++P+ RG+  
Sbjct: 115 ERQPINAVGNIMKSRVYEELDVP----SFTDRTRASLKIQEGCNNFCTFCIIPWARGLMR 170

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR   +VV +A++L+  G  EI L G +     G G D +  + + LL  L +++GL RL
Sbjct: 171 SRDPQEVVRQAQQLVHAGYKEIVLTGIHTG---GYGEDLKDYSLARLLEDLEKVEGLKRL 227

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R ++     ++D +I   G    ++ ++H+P+QSGSD +LK M R++T   Y + I++++
Sbjct: 228 RISSIEASQLTDEVIAVIGKSSKVVRHMHIPLQSGSDTVLKRMRRKYTMAAYEERIEKLK 287

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              P +AI+SD IVGFPGET+++F+ T D + K  +++   F YS R GTP + M +Q+D
Sbjct: 288 QALPRLAITSDVIVGFPGETEEEFQETYDFIAKHKFSELHVFPYSMRTGTPAARMTDQID 347

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK---GKLVGRSPWLQSVVL 440
           E +K ER+  L +   +    +  +   +++EV+ E+  K+    G  VG +     V L
Sbjct: 348 EAIKNERVHRLIELSNQLAKEYASSFENEVLEVIPEERDKDNPESGLFVGYTDNYLKVKL 407

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
            +    IG +++V+I +       GE V
Sbjct: 408 EADETMIGKLVRVKIKEAGYPYNRGEFV 435


>gi|184201228|ref|YP_001855435.1| putative tRNA-thiotransferase [Kocuria rhizophila DC2201]
 gi|229890554|sp|B2GKH0|MIAB_KOCRD RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|183581458|dbj|BAG29929.1| putative tRNA-thiotransferase [Kocuria rhizophila DC2201]
          Length = 513

 Score =  413 bits (1061), Expect = e-113,   Method: Composition-based stats.
 Identities = 163/450 (36%), Positives = 244/450 (54%), Gaps = 21/450 (4%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           + V++ GCQMN +DS R+  +  + GY      +  DL+V NTC +RE A  K+Y  LG+
Sbjct: 29  YEVRTLGCQMNAHDSERITGLLENAGYVPAVGREP-DLVVFNTCAVRENADNKLYGQLGQ 87

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           +  +K    +    L + V GC+AQ +   I+ ++P V+VV G      LP LLERAR  
Sbjct: 88  LAPVK----RRNDRLQIAVGGCLAQKDRSTIVEKAPWVDVVFGTHNIGSLPVLLERARHN 143

Query: 147 KRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           ++  V+   S+E     L        R++    +++I  GC+  CTFC+VP  RG E  R
Sbjct: 144 QQAQVEILESLETFPSALPT-----KREQAYAGWVSISVGCNNTCTFCIVPQLRGKEKDR 198

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
               ++ E R L+D+G  E+TLLGQNVN++  +   G++  F+ LL +  EI+GL R+R+
Sbjct: 199 RPGDILAEVRALVDSGAVEVTLLGQNVNSYGVEF--GDRGAFAKLLRACGEIEGLERIRF 256

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
           T+ HP   +D +I A  +   +MP LH+P+QSGSDRILK M R + +  +  I+DR+R  
Sbjct: 257 TSPHPAAFTDDVIDAMAETPNVMPQLHMPLQSGSDRILKRMRRSYRSTRFLGILDRVRDR 316

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            PD AI++D IVGFPGET+ DF+ T+D+V    ++ AF+F+YS R GTP   M +QV   
Sbjct: 317 IPDAAITTDIIVGFPGETEQDFQDTLDVVAASEFSSAFTFQYSIRPGTPAGEMADQVPAA 376

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE----KHGKEKGKLVGRSPWLQSVVLN 441
           V  ER   L           N   VG   EVL+     +  +   +L GRS   + V   
Sbjct: 377 VVQERFERLTALQDGISARLNRQLVGTRAEVLVSAQSGRKSESTHRLSGRSRDQRLVHFT 436

Query: 442 SKN----HNIGDIIKVRITDVKISTLYGEL 467
             +       GD++ V +T      L  + 
Sbjct: 437 VPDGAVAPRPGDVVSVPVTGAASYHLLADP 466


>gi|299136873|ref|ZP_07030056.1| RNA modification enzyme, MiaB family [Acidobacterium sp. MP5ACTX8]
 gi|298601388|gb|EFI57543.1| RNA modification enzyme, MiaB family [Acidobacterium sp. MP5ACTX8]
          Length = 472

 Score =  412 bits (1060), Expect = e-113,   Method: Composition-based stats.
 Identities = 171/445 (38%), Positives = 261/445 (58%), Gaps = 13/445 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + F+++++GCQMN +DS ++      +GY +V    DA LI+ NTC IR+KA +KV+  L
Sbjct: 16  KTFYIETFGCQMNAHDSEKVVGTLLREGYSQVVDEADAGLILYNTCSIRDKAEQKVFHRL 75

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
              + ++    K        V GCVAQ EG +I  R+P V++V G  +Y  LPE+L R  
Sbjct: 76  NEYKRMQGEGKKF------AVLGCVAQQEGNKIFERAPYVSLVAGSASYRNLPEMLARLE 129

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G+  +     ++D+    +      +R      ++TI EGCDKFC++CVVPYTRG E S
Sbjct: 130 AGETRIT---GLDDRQTDETFDTEFTSRTNPHRGYITIIEGCDKFCSYCVVPYTRGKERS 186

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R+ + V+ EA+++   G  EI LLGQNVN++        K +F++LL ++ E+ G+ R+R
Sbjct: 187 RTSASVLAEAQRIAQMGFTEIQLLGQNVNSYLDPS---GKRSFAELLAAVGEVNGIKRVR 243

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +TTSHPRD +  ++ A   +  L  ++HLPVQSGS  +L++M R +T   Y + I   ++
Sbjct: 244 FTTSHPRDFTKDIVDAIDAVPTLCDHVHLPVQSGSTDVLRAMQRDYTRDWYLERIAWTKA 303

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
            R DI+++SD IVGFPGETD DF  T+ L++ +GY   + FKYSPR  TP  +M + + E
Sbjct: 304 ARRDISLTSDIIVGFPGETDRDFEDTITLLETVGYDAIYGFKYSPRPNTPAIHMHDSIPE 363

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
           +VK  RL  L  + RE Q       + Q +EV++E     +G++ GRS   ++V     +
Sbjct: 364 DVKVARLAILNARQREIQRENYGRHLDQTVEVMVEHGANSRGQITGRSTQNKTVNFMCDS 423

Query: 445 HNI-GDIIKVRITDVKISTLYGELV 468
               G  I VRIT V  S+L GE +
Sbjct: 424 TPPSGSYIDVRITQVFPSSLVGEAI 448


>gi|160903280|ref|YP_001568861.1| RNA modification protein [Petrotoga mobilis SJ95]
 gi|229890590|sp|A9BGV7|MIAB_PETMO RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|160360924|gb|ABX32538.1| RNA modification enzyme, MiaB family [Petrotoga mobilis SJ95]
          Length = 439

 Score =  412 bits (1060), Expect = e-113,   Method: Composition-based stats.
 Identities = 141/444 (31%), Positives = 249/444 (56%), Gaps = 11/444 (2%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +F+++++GCQMN+ +S  M  +   +G+E   +  +AD+I++N+C +REKA  K+Y  +G
Sbjct: 2   KFYIRTFGCQMNINESEIMAGLLKEEGFEWTENPKEADIILINSCAVREKAENKMYGAIG 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
               LK+       +L++ V GC A+ E E +L R   ++ V G +    +  L++RA  
Sbjct: 62  GYGKLKDE----NKNLILGVGGCSAEKERENLLERFKNIDFVFGTRNVVDIGNLVKRALN 117

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           GKR  D    + D    +  +    +      A++TI  GC+K+C++C+VPYTRG E SR
Sbjct: 118 GKRFADFSDKLNDVNYDIPKMPISKHH-----AWITIIYGCNKYCSYCIVPYTRGFEKSR 172

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            +  ++ E       G  EIT LGQNV++  GK    +K     L+   +E   + R+ +
Sbjct: 173 PMEDIIREVESYAKKGYKEITFLGQNVDS-YGKDFGDKKSKLDLLIQKAAEFDSIKRIWF 231

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
            TS+P D++D LI+   + +    Y HLP QSGS++ILK+MNR++T  E+ +++++++  
Sbjct: 232 LTSYPSDITDSLIQTVANEEKAANYFHLPAQSGSNKILKAMNRKYTREEFIELVNKVKKE 291

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML-EQVDE 384
             ++ +SSDFI GFP ETD+DF  T+DL+ +  + +    +YSPR GT       + V +
Sbjct: 292 VANVTVSSDFITGFPSETDEDFEETVDLIKQCRFERINIAEYSPREGTIAYKYQNDDVPK 351

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
           ++K +RL  L +  +   +  N+  + Q + ++ E    + G  +GR+   + ++  S  
Sbjct: 352 HIKNKRLQYLMELQKRINLEENEKYLEQEVVIIQEGKAGKNGTYMGRTMNNKLIIFESNE 411

Query: 445 HNIGDIIKVRITDVKISTLYGELV 468
              G+ +KV++  +    LYGE+V
Sbjct: 412 ELNGEFLKVKVNKITPGPLYGEVV 435


>gi|147677631|ref|YP_001211846.1| 2-methylthioadenine synthetase [Pelotomaculum thermopropionicum SI]
 gi|238066433|sp|A5D2R3|RIMO_PELTS RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|146273728|dbj|BAF59477.1| 2-methylthioadenine synthetase [Pelotomaculum thermopropionicum SI]
          Length = 444

 Score =  412 bits (1060), Expect = e-113,   Method: Composition-based stats.
 Identities = 140/451 (31%), Positives = 214/451 (47%), Gaps = 17/451 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +  + S GC  N+ DS  M  +    GYE      +AD++++NTC     A E+    + 
Sbjct: 4   KIGLVSLGCPKNLVDSEIMLGILKKAGYEITAREKEADVLIVNTCSFINDAKEESIRTII 63

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +   K      G    ++VAGC+AQ    E++   P ++ +VG      +   + R   
Sbjct: 64  ELARNK----INGRCRAILVAGCLAQRYPAELMAEMPEIDGLVGTGQVPEIARAVRRVLE 119

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G +V+ T             V          TA+L I EGCD  C++CV+P  RG   SR
Sbjct: 120 GGKVLLTGSPGYLHDAYFPKV----LATPPYTAYLKIAEGCDNRCSYCVIPAVRGPFRSR 175

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            +  ++ EA +L + GV E+ ++ Q+     G  L G K     LL  L+ IKG V LR 
Sbjct: 176 RMEDIMSEAEELANKGVKELIIVAQDTT-RYGIDLYG-KPMLDALLEGLTGIKGPVWLRL 233

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
             ++P  ++D LI        +  YL +P Q  S+R+L+ MNRR +  E  +++ ++R+ 
Sbjct: 234 LYTYPSLITDDLIYLMAKSRKICRYLDIPFQHASNRVLQLMNRRGSKEEAARLVAKLRAD 293

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P I + + FIVGFPGET++DF+  +D + +  + +A  F YS   GT  + M  QV E 
Sbjct: 294 IPGIVLRTTFIVGFPGETEEDFQELLDFMAEAKFDRAGVFTYSREEGTAAAEMPGQVPEE 353

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRS----PWLQS-VV 439
           VK  R        +E  +  N   VG++IEVL+E    K +G   GRS    P +   V 
Sbjct: 354 VKLLRRERAMMLQQEISLQKNLKRVGEVIEVLVEGKSLKGRGMYTGRSEGDAPGIDGKVF 413

Query: 440 LNSK-NHNIGDIIKVRITDVKISTLYGELVV 469
             S  N   GD  +V I       L GE V+
Sbjct: 414 FKSGFNLQPGDFARVLIKGGTEYDLTGETVL 444


>gi|467090|gb|AAA17273.1| B2235_C2_195 [Mycobacterium leprae]
          Length = 516

 Score =  412 bits (1060), Expect = e-113,   Method: Composition-based stats.
 Identities = 163/482 (33%), Positives = 258/482 (53%), Gaps = 42/482 (8%)

Query: 9   GVAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDD---ADLI 65
             A M           + + V++YGCQMNV+DS R+  +  + GY+R     D   AD++
Sbjct: 3   RDAGMADDAATGST--RTYQVRTYGCQMNVHDSERLAGLLEAAGYQRAADEADVGDADVV 60

Query: 66  VLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVN 125
           V NTC +RE A  ++Y  L  +   K    +   D+ + V GC+AQ +   +L ++P V+
Sbjct: 61  VFNTCAVRENADNRLYGNLSHLAPRK----RNNPDMQIAVGGCLAQKDKHTVLSKAPWVD 116

Query: 126 VVVGPQTYYRLPELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQE 184
           +V G      LP LL+RAR  K   V+   +++     L        R+    A+++I  
Sbjct: 117 IVFGTHNLGSLPTLLDRARHNKVAQVEIVEALQHFPSSLPSA-----RESDYAAWVSISV 171

Query: 185 GCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG-- 242
           GC+  CTFC+VP  RG E+ RS + ++ E   L+ +GV E+TLLGQNVNA+     D   
Sbjct: 172 GCNNSCTFCIVPSLRGKEVDRSPADILAEVEALVADGVLEVTLLGQNVNAYGVSFADPAL 231

Query: 243 --EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300
              + +F++LL S   I GL R+R+T+ HP + +  +I+A      + P LH+P+QSGSD
Sbjct: 232 ARNRGSFAELLRSCGSIDGLERVRFTSPHPAEFTYDVIEAMAQTPNVCPSLHMPLQSGSD 291

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
           R+L++M R +    Y  II ++R+  P  AI++D IVGFPGET++DF AT+D+V ++ + 
Sbjct: 292 RVLRAMRRSYRVERYLGIIGQVRAAMPHAAITTDLIVGFPGETEEDFAATLDVVRQVRFT 351

Query: 361 QAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-E 419
            AF+F+YS R GTP + +  Q+ + V  ER   L +   +  +  N   +G+I+E+L+  
Sbjct: 352 AAFTFQYSKRPGTPAAELGGQLPKAVVQERYERLVELQEQICMEENRVLIGRIVELLVTT 411

Query: 420 KHGKE------------KGKLVG---RSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLY 464
             G++             G+LV     +PW   V         GDII V +T+     L 
Sbjct: 412 GEGRKDARTARRTGRARDGRLVHFALDTPWEAQV-------RPGDIITVMVTEAAPHHLI 464

Query: 465 GE 466
            +
Sbjct: 465 AD 466


>gi|167758331|ref|ZP_02430458.1| hypothetical protein CLOSCI_00670 [Clostridium scindens ATCC 35704]
 gi|167664228|gb|EDS08358.1| hypothetical protein CLOSCI_00670 [Clostridium scindens ATCC 35704]
          Length = 449

 Score =  412 bits (1059), Expect = e-113,   Method: Composition-based stats.
 Identities = 145/448 (32%), Positives = 227/448 (50%), Gaps = 18/448 (4%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
               S GC  N+ DS  M  +  ++GY  V+    AD+I++NTC     A E+    +  
Sbjct: 11  ILFISLGCDKNLVDSEVMLGLLAAKGYRMVDDEMQADIIIVNTCCFIHDAKEESIQTILE 70

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           +   K     +G   ++VV GC+AQ   +EIL   P V+ V+G  +Y ++ E +E A  G
Sbjct: 71  MAQYKT----DGRLKVLVVTGCLAQRYQQEILDEIPEVDAVLGTTSYDKIVEAVEEALAG 126

Query: 147 KRVVDTDYSVEDKFERLSIVD-GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           K  V+      +  + L +VD        G  A+L I EGCDK CT+C++P  RG   S 
Sbjct: 127 KGHVEV-----EDIDALPLVDTRRLVTTGGHFAYLKIAEGCDKHCTYCIIPKIRGDFRSV 181

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            + ++V EA +L + GV E+ L+ Q      GK L GEK +   LL  L  I G+  +R 
Sbjct: 182 PMERLVKEAGELAEQGVKELILVAQETT-LYGKDLYGEK-SLHRLLRELCRISGIRWIRL 239

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
              +P ++ + LI+   +   +  YL LP+Q  +D ILK M RR +  +  +II R+R  
Sbjct: 240 LYCYPEEIDENLIQIMKEEKKICHYLDLPIQHANDDILKRMGRRTSKNQLEEIIGRLRRE 299

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            PDIA+ +  I GFPGET +     M+ VD++ + +   F YSP   TP + M +QV E 
Sbjct: 300 IPDIALRTTLITGFPGETKEQHEELMEFVDEMEFDRLGVFTYSPEEDTPAAGMPDQVPEE 359

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVLN 441
           VK ER   + +  +E      +A +G+ + V+IE    ++   VGR+    P +  ++  
Sbjct: 360 VKEERQAEIMELQQEIVFDQAEAMIGREVLVMIEGKVADENAYVGRTYKDAPNVDGLIFI 419

Query: 442 SKNHNI--GDIIKVRITDVKISTLYGEL 467
           +    +  GD  +V++T      L GEL
Sbjct: 420 NTEAELMSGDFARVKVTGALEYDLIGEL 447


>gi|119358129|ref|YP_912773.1| RNA modification protein [Chlorobium phaeobacteroides DSM 266]
 gi|229890478|sp|A1BIX2|MIAB_CHLPD RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|119355478|gb|ABL66349.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Chlorobium
           phaeobacteroides DSM 266]
          Length = 442

 Score =  412 bits (1059), Expect = e-113,   Method: Composition-based stats.
 Identities = 154/444 (34%), Positives = 244/444 (54%), Gaps = 15/444 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++F++ ++GCQMN  DS  +  +   +GY++  S ++A +I+LNTC +RE A E++  +L
Sbjct: 6   RKFYIHTFGCQMNQADSGIITALLEKEGYQQAASEEEAGIIMLNTCAVRENAVERISHYL 65

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             ++  K        +L+V + GC+ Q   EE+    P+++ + GP TY  LP L+  A 
Sbjct: 66  QHVKGFKRK----CPELIVGLTGCIPQYRREELFTVFPVIDFLAGPDTYRVLPALIAEAG 121

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
             +     +++  + ++ +        R + + AF+ I  GC+  C FCVVP+TRG E S
Sbjct: 122 DSRSAR-LEFNAFETYDGVRQA-----RTQSLNAFVPIIRGCNNMCAFCVVPFTRGRERS 175

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
                V+DE R L D+G  EITLLGQNVN++           FS LL ++S      R+R
Sbjct: 176 HPFESVLDEVRALADDGCREITLLGQNVNSYHD---PASGADFSRLLDAVSREAPETRIR 232

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +TTSHP+DMS  L++       +  +LHLPVQSGS R+L  MNR H   EYR  I+ +R 
Sbjct: 233 FTTSHPKDMSHSLVETMALRPNICNHLHLPVQSGSTRMLARMNRGHDIEEYRNKIELLRK 292

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN-MLEQVD 383
             P I++S+D I GF GE++ D   T++L+ ++ +   F F YS R GT  +  M + V 
Sbjct: 293 WIPGISLSTDLIAGFCGESEADHDQTLELMREVRFDSVFMFYYSVRQGTLAARTMPDDVP 352

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRSPWLQSVVLNS 442
           E VK +RL  +                G ++EVL+E   +    +L+GR+   + VV + 
Sbjct: 353 EEVKKQRLQEIIDLQNGISAELLGLAPGSVVEVLVESESRRSSDQLMGRTDGNRVVVFDR 412

Query: 443 KNHNIGDIIKVRITDVKISTLYGE 466
             H  GD+++V IT    +TL+G+
Sbjct: 413 GIHQPGDLVRVMITGSTSATLFGQ 436


>gi|225351354|ref|ZP_03742377.1| hypothetical protein BIFPSEUDO_02948 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157698|gb|EEG70981.1| hypothetical protein BIFPSEUDO_02948 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 484

 Score =  412 bits (1059), Expect = e-113,   Method: Composition-based stats.
 Identities = 162/473 (34%), Positives = 251/473 (53%), Gaps = 25/473 (5%)

Query: 9   GVAHMVSQIVDQCIVPQR--FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD----DA 62
             + +     +      +  F+V + GCQMNV+DS R+  +  + GY           D 
Sbjct: 11  RASKLAEPATEDTATRGKGVFYVHTLGCQMNVHDSERIAGVLEADGYVPATEEQYLDHDV 70

Query: 63  DLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSP 122
           DLIV+NTC +RE AAE++Y  +G    LK    ++  +L + V GC+AQ + E+I +++P
Sbjct: 71  DLIVMNTCAVRENAAERMYGTIGLWAELK----RQRPNLQIAVGGCMAQLDREKIAKKAP 126

Query: 123 IVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTI 182
            V+ V G +    LP+LL++AR             + F      D    R   V++++ I
Sbjct: 127 WVDAVFGTKNIGSLPQLLDQARIEGHAQVKVKEELNYFPSQLPTD----RASKVSSWVAI 182

Query: 183 QEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG 242
             GC+  CTFC+VP TRG E  R    ++ E R+ +D G  E+TLLGQNVN++ G G+ G
Sbjct: 183 SVGCNNTCTFCIVPTTRGKEHDRRPGDILAEIRQCVDEGAKEVTLLGQNVNSF-GYGI-G 240

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
           ++  FS LL +  EI+GL R+R+T+ HP   +D +I A  +   +M  LH P+QSGSDRI
Sbjct: 241 DRFAFSKLLRACGEIEGLERVRFTSPHPAAFTDDVIAAMAETPNVMHQLHFPLQSGSDRI 300

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           L++M R + + ++  I+ +IR   PD  IS+D IVGFPGET++DF+ T+ +V++  +A A
Sbjct: 301 LRAMRRSYRSAKFLDILRKIREAMPDAQISTDIIVGFPGETEEDFQKTLRVVEEARFASA 360

Query: 363 FSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422
           F+F YSPR GTP + M EQV  +V  +R   L                G+ +EV++    
Sbjct: 361 FTFIYSPRPGTPAAEM-EQVPHDVVQDRFERLVALQERITEENLKTFEGRDVEVMVTGAS 419

Query: 423 KEKG----KLVGRSPWLQSVVLNSKN----HNIGDIIKVRITDVKISTLYGEL 467
            +K     ++ GR      V +          +GD +   IT      L  + 
Sbjct: 420 GKKDAATHRVTGREKTGVLVHVGVPEGEPMPQVGDFVTATITHAGRHNLIADP 472


>gi|223044380|ref|ZP_03614414.1| conserved hypothetical protein [Staphylococcus capitis SK14]
 gi|222442249|gb|EEE48360.1| conserved hypothetical protein [Staphylococcus capitis SK14]
          Length = 448

 Score =  412 bits (1059), Expect = e-113,   Method: Composition-based stats.
 Identities = 138/436 (31%), Positives = 238/436 (54%), Gaps = 17/436 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
                + GC++N Y++  +  +F    Y+RV+   +AD+ V+NTC +     +K    + 
Sbjct: 3   TVAFHTLGCKVNHYETEAIWQLFKEADYDRVDFETNADVFVINTCTVTNTGDKKSRQIIR 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R        I++  + +V V GC AQ    EI+   P V+VVVG Q  ++L + +++ + 
Sbjct: 63  RA-------IRQNPEAVVCVTGCYAQTSSAEIM-EIPGVDVVVGTQDRHKLLDYIDQFQE 114

Query: 146 GKRVVDT--DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            ++ ++   +      +E L +            A L IQEGC+ FCTFC++P+ RG+  
Sbjct: 115 ERQPINGVGNIMKNRTYEELEVP----YFTDRTRASLKIQEGCNNFCTFCIIPWARGLMR 170

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR   +VV++A +L+++G  EI L G +     G G D +    + LL  L EI+GL R+
Sbjct: 171 SRDPEKVVEQASQLVNSGYKEIVLTGIHTG---GYGQDLKNYNLAQLLRDLDEIEGLERI 227

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R ++     ++D +I+  G+ + ++ +LH+P+QSGSD +LK M R++T   + + +  + 
Sbjct: 228 RISSIEASQLTDEVIEVIGNSNKVVRHLHVPLQSGSDSVLKRMRRKYTMEHFSERLTELH 287

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              PD+A++SD IVGFPGET+++F+ T D + K  +++   F YSPR+GTP + M +Q+D
Sbjct: 288 KALPDLAVTSDVIVGFPGETEEEFQETYDFIVKHQFSELHVFPYSPRIGTPAARMDDQID 347

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
           E+VK ER+  L     +    +      +++EV+ E+ G+E   LVG +     V     
Sbjct: 348 ESVKNERVHKLIALSDQLAKEYTSKFENEVLEVIPEEKGEEPNTLVGYADNYMKVQFEGD 407

Query: 444 NHNIGDIIKVRITDVK 459
              IG I+KV+I    
Sbjct: 408 ESLIGQIVKVKILKAD 423


>gi|119026050|ref|YP_909895.1| (dimethylallyl)adenosine tRNA methylthiotransferase
           [Bifidobacterium adolescentis ATCC 15703]
 gi|229890431|sp|A1A280|MIAB_BIFAA RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|118765634|dbj|BAF39813.1| hypothetical protein [Bifidobacterium adolescentis ATCC 15703]
          Length = 480

 Score =  412 bits (1059), Expect = e-113,   Method: Composition-based stats.
 Identities = 162/473 (34%), Positives = 250/473 (52%), Gaps = 25/473 (5%)

Query: 9   GVAHMVSQIVDQCIVPQR--FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD----DA 62
             + +     +      +  F+V + GCQMNV+DS R+  +  + GY           D 
Sbjct: 7   RASKLAEPAANDTPTRGKGVFYVHTLGCQMNVHDSERIAGVLEADGYVPATEEQYLNHDI 66

Query: 63  DLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSP 122
           DLIV+NTC +RE AAE++Y  +G    LK    +E  +L + V GC+AQ + E+I +++P
Sbjct: 67  DLIVMNTCAVRENAAERMYGTIGLWAELK----RERPNLQIAVGGCMAQLDREKIAKKAP 122

Query: 123 IVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTI 182
            V+ V G +    LP+LL++AR             + F      D    R   V++++ I
Sbjct: 123 WVDAVFGTKNIGSLPQLLDQARIEGHAQVKVQEELNYFPSQLPTD----RASKVSSWVAI 178

Query: 183 QEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG 242
             GC+  CTFC+VP TRG E  R    ++ E R+ +D G  E+TLLGQNVN++ G G+ G
Sbjct: 179 SVGCNNTCTFCIVPTTRGKEHDRRPGDILAEIRQCVDEGAKEVTLLGQNVNSF-GYGI-G 236

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
           ++  FS LL +  EI GL R+R+T+ HP   +D +I A  +   +M  LH P+QSGSDRI
Sbjct: 237 DRFAFSKLLRACGEIDGLERVRFTSPHPAAFTDDVIAAMAETPNVMHQLHFPLQSGSDRI 296

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           L++M R + + ++  I+ +IR   PD  IS+D IVGFPGET++DF+ T+ +V++  +A A
Sbjct: 297 LRAMRRSYRSAKFLDILRKIREAMPDAQISTDIIVGFPGETEEDFQETLRVVEEARFASA 356

Query: 363 FSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422
           F+F YSPR GTP + M EQV  +V  +R   L                G+ +EV++    
Sbjct: 357 FTFIYSPRPGTPAAEM-EQVPHDVVQDRFERLVALQERITEENLKTFEGRDVEVMVTGAS 415

Query: 423 KEKG----KLVGRSPWLQSVVLNSKN----HNIGDIIKVRITDVKISTLYGEL 467
            +K     ++ GR      V +          +GD +   +T      L  + 
Sbjct: 416 GKKDAATHRVTGREKTGVLVHVGVPEGEPMPQVGDFVTATVTHAGRHNLIADP 468


>gi|212550847|ref|YP_002309164.1| tRNA-i(6)A37 modification enzyme MiaB [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
 gi|229890446|sp|B6YRD1|MIAB_AZOPC RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|212549085|dbj|BAG83753.1| tRNA-i(6)A37 modification enzyme MiaB [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
          Length = 449

 Score =  412 bits (1059), Expect = e-113,   Method: Composition-based stats.
 Identities = 149/445 (33%), Positives = 261/445 (58%), Gaps = 12/445 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +R F+++YGCQMN+ DS  +  +    G+E   ++ +AD++++NTC +RE A +K++S L
Sbjct: 13  RRIFIETYGCQMNIADSEIVIAIVQMDGFEYTENILEADVVLINTCSVRENAEKKIFSRL 72

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
              ++LK    K+   L++ V GC+A+   E ++++   V++VVGP +Y  LP L+    
Sbjct: 73  QYFQSLK----KKRNQLIIGVLGCMAKRIRETLIQQY-HVDLVVGPDSYMDLPHLIGTVE 127

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G + ++ + S  + ++ +  +      +  ++ F++I  GC+ FC++C+VPYTRG E S
Sbjct: 128 KGAKAININLSSTEVYKGIVPL---KLSRIKISGFISIIRGCNNFCSYCIVPYTRGRERS 184

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R    +++E   L + G  E+ LLGQNVN++  K  +     F  LL  ++     +R+R
Sbjct: 185 RDPKSILNELHILKEQGYKEVILLGQNVNSYFYK--NENITDFPHLLELVALNAPEMRIR 242

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +TTSHP+DM D  ++     + +  ++HLP+QSGS +IL++MNR++T   Y Q +  IR 
Sbjct: 243 FTTSHPKDMGDETLRVIAKYNNICKHIHLPIQSGSSKILRAMNRKYTREWYLQRVTSIRK 302

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN-MLEQVD 383
           + P+++IS+D   GFP ET++D + T+ L+ ++G+  AF FKYS R  T  S  + + V 
Sbjct: 303 IVPEVSISTDLFCGFPSETEEDHKKTLSLMKEVGFDSAFMFKYSERPETYASRYLPDNVP 362

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNS 442
           E VK  RL  +     +  +  N   +G+ +E+LIE   K    +L GR+   + V+   
Sbjct: 363 EEVKIRRLNEIITLQLKISLMKNKENIGKTMEILIEGFSKRSREQLFGRTLQNKIVLFPR 422

Query: 443 KNHNIGDIIKVRITDVKISTLYGEL 467
           KN++IG+ + V I     +TL+G+ 
Sbjct: 423 KNYHIGEKVLVEIKKASAATLFGDP 447


>gi|320103836|ref|YP_004179427.1| MiaB family RNA modification protein [Isosphaera pallida ATCC
           43644]
 gi|319751118|gb|ADV62878.1| RNA modification enzyme, MiaB family [Isosphaera pallida ATCC
           43644]
          Length = 633

 Score =  412 bits (1059), Expect = e-113,   Method: Composition-based stats.
 Identities = 169/423 (39%), Positives = 242/423 (57%), Gaps = 16/423 (3%)

Query: 12  HMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCH 71
              S        P+R F+++ GCQMNV DS  + +     GYE  +    AD I+ NTC 
Sbjct: 32  PERSAPGSDAPPPRRLFIETVGCQMNVLDSELVVERLRRDGYELTSDPQQADTILFNTCS 91

Query: 72  IREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ 131
           +R+ A +KVYS LGR+R LK        ++ + V GC+AQ + + IL+R+P V+++VGP 
Sbjct: 92  VRQHAEDKVYSALGRLRGLKAEH----PEVTIGVLGCMAQKDQKRILQRAPHVDLMVGPG 147

Query: 132 TYYRLPELLERARFGKRVVDTDYSVEDK----------FERLSIVDGGYNRKRGVTAFLT 181
               +PEL+ RA+ G+R + T +S+             F           RK    AF+ 
Sbjct: 148 QLEVVPELIARAKNGERKL-TAFSLPRTAGSRDRVAASFNEFDPARRKEARKVPFQAFVR 206

Query: 182 IQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD 241
           I  GCDKFCT+C+VP  RG E SR   ++V+E R L+D G  E+TLLGQ VN++R K  D
Sbjct: 207 IMMGCDKFCTYCIVPSVRGPEQSRHPDEIVEEVRNLVDQGTREVTLLGQTVNSYRHKTPD 266

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
           G   +F+DLL  L +I GL R+++ T++P DM+D L+ A  DL  +  YLH+P QSG D+
Sbjct: 267 GRITSFADLLAKLHDIDGLRRIKFVTNYPNDMTDELLAAIRDLPRISRYLHVPAQSGCDQ 326

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
           +LK M R +T   Y  ++ RIR   P+ A++SDFIVGF GET+  F+ T+DLV +  +  
Sbjct: 327 VLKRMKRGYTVGLYNDMMARIRETLPEAAVTSDFIVGFCGETEASFQKTVDLVRRWRFKN 386

Query: 362 AFSFKYSPRLGTPGSNM-LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
           +F FKYSPR GT   N+  + V E VK  R   L        +    A VG+ +E+L+E 
Sbjct: 387 SFIFKYSPREGTKAYNLFPDDVPEAVKRRRNNELLAVQNAIALEDQQAFVGRTVEILVEG 446

Query: 421 HGK 423
             K
Sbjct: 447 PSK 449



 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 20/51 (39%)

Query: 419 EKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
           E       +L GR+   + VV       IG  + V I      TL+G+ V 
Sbjct: 551 ESEEDRPLQLTGRTACDRIVVFEGHPRLIGSFLPVTIQAASAVTLFGQAVT 601


>gi|87125523|ref|ZP_01081368.1| hypothetical protein RS9917_02081 [Synechococcus sp. RS9917]
 gi|86166823|gb|EAQ68085.1| hypothetical protein RS9917_02081 [Synechococcus sp. RS9917]
          Length = 465

 Score =  412 bits (1059), Expect = e-113,   Method: Composition-based stats.
 Identities = 172/454 (37%), Positives = 260/454 (57%), Gaps = 23/454 (5%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           ++V ++GCQMN  DS RM  +  S GY   ++  +ADL++ NTC IR+ A +KVYS+LGR
Sbjct: 23  YWVTTFGCQMNKADSERMAGILESMGYREASAELEADLVLYNTCTIRDNAEQKVYSYLGR 82

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
               K    +   +L +VVAGCVAQ EGE +LRR P +++V+GPQ   RL  LL +   G
Sbjct: 83  QAQRK----RTNPNLTLVVAGCVAQQEGESLLRRVPELDLVMGPQHANRLDVLLAQVEQG 138

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           ++VV T+       E ++       R   +  ++ +  GC++ CT+CVVP  RG E SR 
Sbjct: 139 QQVVATEE--HHILEDITTAR----RDSAICGWVNVIYGCNERCTYCVVPSVRGKEQSRL 192

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG------EKCTFSDLLYSLSEIKGL 260
            + +  E   L   G  EITLLGQN++A  G+ L G       + T +DLL  + +++GL
Sbjct: 193 PAAIRLEMEGLAAQGFKEITLLGQNIDA-YGRDLPGITPEGRRQHTLTDLLQFVHDVEGL 251

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+ TSHPR  ++ LI A  +L  +  + H+P QSG D +LK+M R +T   YR+IID
Sbjct: 252 ERIRFATSHPRYFTERLIDACAELPKVCEHFHIPFQSGDDAVLKAMARGYTVDRYRRIID 311

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           RIR   PD AIS+D IV FPGET   +R T+DL++ IG+ Q  +  YSPR  TP ++  +
Sbjct: 312 RIRERMPDAAISADVIVAFPGETAAQYRRTLDLIEAIGFDQVNTAAYSPRPNTPAADWPD 371

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVV 439
           Q+ E VK ERL  +   +     + +    G+  +VL+E    K+  +++GR+   +   
Sbjct: 372 QLPEAVKVERLREINALVERVARARSARYAGRTEQVLVEGINPKDPEQVMGRTRTNRLTF 431

Query: 440 L-----NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 +      GD+++VRI  V+  +L G  +
Sbjct: 432 FPAARTDGSRWQPGDLVEVRIEAVRSFSLSGTPI 465


>gi|269956048|ref|YP_003325837.1| RNA modification enzyme, MiaB family [Xylanimonas cellulosilytica
           DSM 15894]
 gi|269304729|gb|ACZ30279.1| RNA modification enzyme, MiaB family [Xylanimonas cellulosilytica
           DSM 15894]
          Length = 543

 Score =  412 bits (1059), Expect = e-113,   Method: Composition-based stats.
 Identities = 165/476 (34%), Positives = 261/476 (54%), Gaps = 49/476 (10%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVN----SMDDADLIVLNTCHIREKAAEKVYSFL 84
           V++ GCQMNV+DS  M  M    GY R +    + + AD++V+NTC +RE AA ++Y  L
Sbjct: 25  VRTLGCQMNVHDSEHMAGMLEQAGYVRASQADDAANAADVVVINTCAVRENAATRLYGNL 84

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           G++ ++K +R      + + V GC+AQ +  EI+ ++P V+VV G      LP LLERAR
Sbjct: 85  GQLASIKAAR----PGMQIAVGGCLAQKDRGEIVAKAPYVDVVFGTHNLDALPVLLERAR 140

Query: 145 FGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             +   V+   S++     L        R+     +++I  GC+  CTFC+VP+ RG E 
Sbjct: 141 HNEAAQVEIAESLQVFPSTLPT-----RRESVYAGWVSISVGCNNTCTFCIVPHLRGKER 195

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
            R   +++ E + L+D G  E+TLLGQNVN++  +   G++  F+ LL +  +I GL R+
Sbjct: 196 DRRPGEILAEVQALVDAGAVEVTLLGQNVNSYGVEF--GDRGAFAKLLRACGQIAGLERV 253

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+T+ HP   +D +I A      +MP LH+P+QSGSDR+L++M R + + ++  I+DR+R
Sbjct: 254 RFTSPHPAAFTDDVIDAMAQTPNVMPSLHMPLQSGSDRVLRAMRRSYRSEKFLGILDRVR 313

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           +  PD AI++D IVGFPGET++DF  T+ +V+   +A AF+F+YSPR GTP + M  Q+ 
Sbjct: 314 AAMPDAAITTDLIVGFPGETEEDFAETLRVVEASRFASAFTFQYSPRPGTPAATMDGQLP 373

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKG---KLVGRSPWLQSVV 439
           + V  ER   L           + A VG+ +E+L+ E  GK+ G   +L GR+P  + V 
Sbjct: 374 KEVVQERFERLLALQERISTEESAAQVGRTVELLVTEGRGKKDGATHRLSGRAPDNRLVH 433

Query: 440 L-----------------------------NSKNHNIGDIIKVRITDVKISTLYGE 466
                                         + +    GD++ V +T      L  +
Sbjct: 434 FALPADVAGGHGSGEPTSLADERLRPTVELDPRLPRPGDLVTVEVTRSAPHHLIAD 489


>gi|296121908|ref|YP_003629686.1| RNA modification enzyme, MiaB family [Planctomyces limnophilus DSM
           3776]
 gi|296014248|gb|ADG67487.1| RNA modification enzyme, MiaB family [Planctomyces limnophilus DSM
           3776]
          Length = 501

 Score =  412 bits (1059), Expect = e-113,   Method: Composition-based stats.
 Identities = 162/463 (34%), Positives = 251/463 (54%), Gaps = 24/463 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + ++++ GCQMN+ DS  +      +GYE  +  DDAD I+ NTC +RE A  K+YS LG
Sbjct: 29  KLYIETVGCQMNMLDSELVVAALRREGYELTSQPDDADTILFNTCSVREHAEHKIYSALG 88

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R+++ +    K+    ++ V GC+AQ +   I  R+P V++VVG      +P L++ AR 
Sbjct: 89  RLKHAR----KQRPQQVIGVMGCMAQKDQSLIFDRAPHVDIVVGTGQMAEIPGLIKNARK 144

Query: 146 GK---------RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
            +         R   T   V   F+    +     R     AF+ I  GCDKFCT+CVVP
Sbjct: 145 DRERALAVSLDRKAGTRREVSASFQSYDPLREPEMRPSPYQAFVRIMFGCDKFCTYCVVP 204

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256
            TRG E SR  S+++ E   L   GV E+TLLGQ VN+++    +G+    SDLL ++ E
Sbjct: 205 MTRGPEQSRLPSEILAEVAHLAGQGVKEVTLLGQTVNSYKCV-ENGKTWRLSDLLAAMHE 263

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
             G++R ++ TS+PRDM+D L+ A  DL     Y+H+P+Q G D +L  M R +T   YR
Sbjct: 264 TPGMLRFKFVTSYPRDMTDDLLIALRDLPKCSHYIHVPLQHGCDDVLTRMKRGYTTAHYR 323

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
           ++  RI+   P  A+SSDFIVGF GET++  + +++ + +  +  +F FKYS R GT   
Sbjct: 324 EMHQRIKEYLPYSAVSSDFIVGFCGETEESHQKSLEAIREYRFKNSFIFKYSERPGTKAQ 383

Query: 377 NML-EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE---------KG 426
           ++  + + + VK  R   L +   E     N A +G+ +EVL+E   K          K 
Sbjct: 384 SLFQDDIPDEVKKRRNQELLELQNEISEEDNAAFIGREVEVLVEGPSKNAIKKADSSLKE 443

Query: 427 KLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
           +L GR+   + VV +      G + +V + DV  +TL G ++ 
Sbjct: 444 QLTGRTRCDRIVVFDGNPRLAGSLAQVVVHDVTPTTLVGSILT 486


>gi|111023729|ref|YP_706701.1| hypothetical protein RHA1_ro06771 [Rhodococcus jostii RHA1]
 gi|110823259|gb|ABG98543.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
          Length = 552

 Score =  412 bits (1058), Expect = e-113,   Method: Composition-based stats.
 Identities = 152/442 (34%), Positives = 243/442 (54%), Gaps = 17/442 (3%)

Query: 16  QIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREK 75
             +DQ    + + V++YGCQMNV+DS R+  +    GY +  +    DL+V NTC +RE 
Sbjct: 49  DTIDQTPH-RSYEVRTYGCQMNVHDSERLSGLLEDAGYTKAAAGQAPDLVVFNTCAVREN 107

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135
           A  K+Y  L  +   K        D+ + V GC+AQ + + +++++P V+VV G      
Sbjct: 108 ADNKLYGNLSHLAPAKER----NPDMQIAVGGCLAQKDRDVVVKKAPWVDVVFGTHNIGS 163

Query: 136 LPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
           LP LL+RAR  +R         + F           R+     +++I  GC+  CTFC+V
Sbjct: 164 LPALLDRARHNQRAEVEILEALEAF----PSTLPAKRESAYAGWVSISVGCNNTCTFCIV 219

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT----FSDLL 251
           P  RG E+ R    ++ E + L++ GV E+TLLGQNVNA+     D ++      F+ LL
Sbjct: 220 PALRGKEVDRRPGDILAEVQALVNEGVVEVTLLGQNVNAYGVSFADPDQPRDRGAFAALL 279

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
            +  +I GL R+R+T+ HP + +D +I+A  +   + P LH+P+QSGSDR+LK+M R + 
Sbjct: 280 RACGQIDGLERVRFTSPHPAEFTDDVIEAMAETPNVCPQLHMPLQSGSDRVLKAMRRSYR 339

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
              +  IID++R+  P  AI++D IVGFPGET++DF+ T+D+V +  +  A++F+YS R 
Sbjct: 340 KSRFLGIIDKVRTAMPHAAITTDIIVGFPGETEEDFQDTLDVVRQARFTSAYTFQYSKRP 399

Query: 372 GTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI---EK-HGKEKGK 427
           GTP + M EQ+ + V  ER   L     +  +  N   VG  +E+L+   E     E  +
Sbjct: 400 GTPAAEMDEQLPKAVVQERYERLIALQEQITLEENQKLVGAEVELLVAAGEGRKNAETAR 459

Query: 428 LVGRSPWLQSVVLNSKNHNIGD 449
           + GR+   + V    + +  G 
Sbjct: 460 MSGRARDGRLVHFRPEGNLDGT 481


>gi|86156522|ref|YP_463307.1| hypothetical protein Adeh_0093 [Anaeromyxobacter dehalogenans
           2CP-C]
 gi|85773033|gb|ABC79870.1| SSU ribosomal protein S12P methylthiotransferase [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 483

 Score =  412 bits (1058), Expect = e-113,   Method: Composition-based stats.
 Identities = 141/465 (30%), Positives = 227/465 (48%), Gaps = 18/465 (3%)

Query: 11  AHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC 70
                 +  +  +  R ++ + GC  N  DS  M       GY  V     A++IV+NTC
Sbjct: 2   PRAPRSVRSRVPMATRVYMHTLGCPKNRVDSEVMLGTLAEAGYRLVQDPAKAEVIVVNTC 61

Query: 71  HIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGP 130
              E A E+    +  + + K    +EG    +VV GC+ Q   EE+ R  P V+  +G 
Sbjct: 62  GFIESAKEESVEAIVELADQK----REGRCRKLVVTGCLVQRHAEELARELPEVDHFLGT 117

Query: 131 QTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190
             Y  +  ++  A+  + VV       D     S      N     TA+L I EGCD  C
Sbjct: 118 GAYQDVARIVSDAQAKRLVV------PDPDFVHSAATPRVNSLPSHTAYLKIAEGCDNAC 171

Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDL 250
            FC++P  RG + SR +  +V EA  L   G  E++L+ Q++ A  G+ L G K     L
Sbjct: 172 AFCIIPKLRGGQRSRPIDDLVAEAAALAAQGTVELSLVAQDLTA-YGQDLPG-KVRLHHL 229

Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
           L  L+++ GL  +R   ++PRD+ D L+ A  D   ++ YL +P+Q  SDR+L++M R  
Sbjct: 230 LPELAKVDGLRWIRLHYAYPRDVPDALVAAMADEPKIVKYLDMPLQHSSDRLLRAMKRGR 289

Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370
            +   R ++ R+R+  P +A+ +  IVG PGET+ DF   +  V++  + +   F+YSP 
Sbjct: 290 DSVFLRDLLARLRARIPGLALRTALIVGLPGETEADFEDLLRFVEEQRFERLGVFEYSPE 349

Query: 371 LGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV- 429
            GTP + M +QV + +K ER   +    +    +   A +G+ +EVL+E   +E   L+ 
Sbjct: 350 EGTPAAEMADQVPDALKRERRDRIMAVQQGISRAHQQAMIGRRLEVLVEGRAEETEHLLA 409

Query: 430 GR----SPWLQSV-VLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
           GR    +P +  +  +N      G+I+ V ITD     L G +V 
Sbjct: 410 GRHAQQAPEIDGLTYVNDGVAYPGEIVTVEITDAAEYDLVGRVVA 454


>gi|325831353|ref|ZP_08164607.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Eggerthella sp. HGA1]
 gi|325486607|gb|EGC89055.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Eggerthella sp. HGA1]
          Length = 459

 Score =  412 bits (1058), Expect = e-113,   Method: Composition-based stats.
 Identities = 168/450 (37%), Positives = 253/450 (56%), Gaps = 15/450 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
            F ++++GCQMN +DS R+  M    G  +V++++DAD++   TC +RE A  ++Y  + 
Sbjct: 9   TFCIRTFGCQMNKHDSERIAGMLEGMGALQVDAIEDADIVAFMTCCVREAADTRLYGQVA 68

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA-R 144
            ++N+           +V V GC+ Q +GE+++     ++VV G      LP LLE A  
Sbjct: 69  SLKNVPLRAGTPLSKRIVAVGGCIGQRDGEKLVDELKHLDVVFGTHNLGSLPRLLEAALE 128

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G   V+   +       L        R+    A+L I  GC+ FC++C+VPY RG E S
Sbjct: 129 EGGHQVEVLDAASSFPTELPTA-----REHEWAAWLPITIGCNNFCSYCIVPYVRGREKS 183

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R L  +V EA + +  GV EITLLGQNVN+  G+ L G    F+ +L +L +  G+ RLR
Sbjct: 184 RPLEDIVAEAERYVAAGVKEITLLGQNVNS-YGRDLYGSP-RFAQVLDALDQ-TGIERLR 240

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           + TSHP+D++D ++     L  LMP LHLPVQSGSD +L +MNRR+T   YR ++ ++R 
Sbjct: 241 FATSHPKDLNDEVVGRFATLRSLMPALHLPVQSGSDAVLAAMNRRYTRDHYRALVAKLRD 300

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             PDIA+S+D IVGFPGET  DF  T  LVD++GY Q F+F YS R GTP ++M +    
Sbjct: 301 DVPDIALSTDIIVGFPGETAKDFEDTYRLVDEVGYHQVFTFIYSKREGTPAASMDDDTPR 360

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVLNSK 443
            V  +R   L   ++++    N   +G  ++VL+E   K   + L G+SP  Q+V   + 
Sbjct: 361 EVIQQRFDRLVDLVQQRAFEANQRDLGSTVDVLVEGASKRDERLLAGKSPKNQTVHAPAP 420

Query: 444 -----NHNIGDIIKVRITDVKISTLYGELV 468
                    G  ++VR+ + K   L GE+V
Sbjct: 421 AGVRAEDLAGSTVRVRVDEAKTWYLAGEIV 450


>gi|124002076|ref|ZP_01686930.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Microscilla marina ATCC
           23134]
 gi|123992542|gb|EAY31887.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Microscilla marina ATCC
           23134]
          Length = 493

 Score =  412 bits (1058), Expect = e-113,   Method: Composition-based stats.
 Identities = 153/467 (32%), Positives = 261/467 (55%), Gaps = 30/467 (6%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ +++SYGCQMN  DS  +  +    G++  + +D+AD+++LNTC IR+ A ++V + L
Sbjct: 34  RKLYIESYGCQMNFSDSEIVASIMSEHGFDTTSEVDNADVVLLNTCAIRDNAEQRVRNRL 93

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             + ++KN        ++V V GC+A+   + +L    +V++V GP +Y  LP+L+ +A 
Sbjct: 94  RNLNHIKNK----KPGMVVGVLGCMAERLKKRLLEEEQMVDIVAGPDSYRDLPQLVLQAD 149

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G+  V+   S ++ +  ++ V        GVTAF++I  GCD  C+FCVVP+TRG E S
Sbjct: 150 EGQEAVNVFLSRDETYADIAPVRLN---SNGVTAFISIMRGCDNMCSFCVVPFTRGRERS 206

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAW-------------------RGKGLDG-EK 244
           R    VV EA+ L D G  E+TLLGQNV+++                   +G  L G + 
Sbjct: 207 RDPYSVVKEAQDLFDKGYREVTLLGQNVDSYLWSSNPDVISLLGEKKAVKKGADLTGVDI 266

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304
             F+ LL  ++ +   +R+R++TSHP+D+++ ++      + +  Y+HLPVQSG+ R+L 
Sbjct: 267 VDFAGLLEKVALVSPDLRIRFSTSHPKDITEDVLHTMAKYENICKYIHLPVQSGNSRVLD 326

Query: 305 SMNRRHTAYEYRQIIDRIRSVR-PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           +MNR +T   Y +I+  IR +   +  ISSD I GF  ETD++ + T+ L+ ++ Y  ++
Sbjct: 327 AMNRGYTRERYLEIVASIRRILGEECGISSDMIAGFCTETDEEHQDTLTLMKEVKYDFSY 386

Query: 364 SFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422
            F YS R  T  +  M + V   VK +RL  +    +E  +  N   +G++ +VL+E   
Sbjct: 387 MFYYSERPNTTAAKKMEDDVPLEVKKKRLQEIIALQQELSLKRNQQDIGKVHKVLVEGFS 446

Query: 423 KE-KGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           K     L GR+   + V+   K++  GD + V + +   +TL G+ V
Sbjct: 447 KRSDDYLKGRNTANKMVIFPKKHYKKGDYVNVMVKECSAATLIGDPV 493


>gi|312195023|ref|YP_004015084.1| RNA modification enzyme, MiaB family [Frankia sp. EuI1c]
 gi|311226359|gb|ADP79214.1| RNA modification enzyme, MiaB family [Frankia sp. EuI1c]
          Length = 550

 Score =  412 bits (1058), Expect = e-113,   Method: Composition-based stats.
 Identities = 169/470 (35%), Positives = 251/470 (53%), Gaps = 38/470 (8%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + + + V+++GCQMNV+DS R+  +  S GY  V++ +  DL+V NTC +RE A  ++Y 
Sbjct: 1   MGRSYQVRTFGCQMNVHDSERISGLLESAGYVPVDAGETPDLVVFNTCAVRENADNRLYG 60

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            LG +   K    ++   + + V GC+AQ +   I R++P V+VV G    +RLP LLER
Sbjct: 61  NLGHLYPTK----RDNPGMQIAVGGCLAQKDRGTITRKAPWVDVVFGTHNLHRLPVLLER 116

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           AR             + F           R    +A+++I  GCD  CTFC+VP  RG E
Sbjct: 117 ARHNAEAQVEIAEALEVFPSTLPAR----RASHASAWVSISVGCDNTCTFCIVPSLRGKE 172

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
             R    V+ E   L+ +G  E+TLLGQNVN+  G+   G+   F+ LL +   I+GL R
Sbjct: 173 RDRRPGDVLAEVEALVADGAVEVTLLGQNVNS-YGRSF-GDPGAFAKLLRACGRIEGLER 230

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+T+ HPRD +D +I A  +   + P LH+P+QSGSD +L+ M R +    Y  I++R+
Sbjct: 231 VRFTSPHPRDFTDDVIAAMAETPNVCPSLHMPMQSGSDEVLRRMRRSYRRDRYLGIVERV 290

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+  PD AI++D IVGFPGET+ DF  T+D+V +  ++ AF+F+YSPR GTP + M EQV
Sbjct: 291 RAALPDAAITTDIIVGFPGETERDFLDTLDVVGQARFSGAFTFQYSPRPGTPAATMDEQV 350

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEK---GKLVGRSPWLQSV 438
              V AER   L     E  ++ N A VG+ +EVL+ E  G++    G+  GR+   + V
Sbjct: 351 PPAVVAERYGRLVALQDEVSLAENRAQVGRTVEVLLAEGEGRKDESTGRRSGRARDGRLV 410

Query: 439 VLNSK------------------------NHNIGDIIKVRITDVKISTLY 464
            L                               GD++   IT      L 
Sbjct: 411 HLGPDANASARSGVHTSPAEEAAVLAELARLRPGDVVTTAITYGAPHYLV 460


>gi|209525671|ref|ZP_03274208.1| RNA modification enzyme, MiaB family [Arthrospira maxima CS-328]
 gi|209493840|gb|EDZ94158.1| RNA modification enzyme, MiaB family [Arthrospira maxima CS-328]
          Length = 436

 Score =  412 bits (1058), Expect = e-113,   Method: Composition-based stats.
 Identities = 167/441 (37%), Positives = 255/441 (57%), Gaps = 19/441 (4%)

Query: 36  MNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRI 95
           MN  DS RM  +    G   V   + AD+++ NTC IR+ A +KVYS+LGR    K    
Sbjct: 1   MNKADSERMAGILDEMGLTFVEDPNQADIVLYNTCTIRDNAEQKVYSYLGRQAKRKQE-- 58

Query: 96  KEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYS 155
               +L ++VAGCVAQ EGE +LRR P +++V+GPQ   RL +LLE+   G +VV T+  
Sbjct: 59  --NPNLTLIVAGCVAQQEGEALLRRVPELDLVMGPQHANRLQDLLEQVFEGSQVVATE-- 114

Query: 156 VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEAR 215
             +  E ++       R   +TA++ +  GC++ CT+CVVP  RG E SR+   +  E  
Sbjct: 115 PINIVEDITKPR----RDSNITAWVNVIYGCNERCTYCVVPNVRGTEQSRTPEAIRAEME 170

Query: 216 KLIDNGVCEITLLGQNVNAWRGKGLDG------EKCTFSDLLYSLSEIKGLVRLRYTTSH 269
           +L   G  E+TLLGQN++A  G+ L G       + T +DLLY + +I G+ R+R+ TSH
Sbjct: 171 ELARAGYKEVTLLGQNIDA-YGRDLPGSTPDGRHQHTLTDLLYYVHDIPGIERIRFATSH 229

Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329
           PR  ++ LI+A  +L  +  + H+P QSG + +LK+M R +T  +YR+II+ IR   PD 
Sbjct: 230 PRYFTERLIRACAELPKVCEHFHIPFQSGDNDVLKAMARGYTHEKYRRIINTIREYIPDA 289

Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAE 389
           +IS+D IVGFPGET+  F  T+ LVD IG+    +  YSPR GT  +    Q+ E VKA+
Sbjct: 290 SISADAIVGFPGETEAQFENTLKLVDDIGFDLLNTAAYSPRPGTGAALWENQLSEEVKAD 349

Query: 390 RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLNSK-NHNI 447
           RL  L + +  + +  +     +I EVL+E    K+  +++GR+   +            
Sbjct: 350 RLQRLNRLVNVKAMERSQRYRDRIEEVLVEGTNPKDPSQVMGRTRGNRLTFFKGNLAELS 409

Query: 448 GDIIKVRITDVKISTLYGELV 468
           G+++KV+I +V+  +L GE +
Sbjct: 410 GELVKVKIIEVRAFSLTGEPI 430


>gi|294102364|ref|YP_003554222.1| RNA modification enzyme, MiaB family [Aminobacterium colombiense
           DSM 12261]
 gi|293617344|gb|ADE57498.1| RNA modification enzyme, MiaB family [Aminobacterium colombiense
           DSM 12261]
          Length = 440

 Score =  412 bits (1058), Expect = e-113,   Method: Composition-based stats.
 Identities = 171/444 (38%), Positives = 256/444 (57%), Gaps = 11/444 (2%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           RF +K YGCQMNVYD  ++       G++   S ++AD+++ N C IR KA  KV+S LG
Sbjct: 3   RFILKVYGCQMNVYDGDKLRTALIRNGWQET-SEEEADIVIFNGCSIRAKAEHKVWSELG 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R     + + K      V V GC+AQ  G  ++ R P V +V GP+    LPE LER   
Sbjct: 62  RYGESWSDKKKP----FVAVTGCIAQRLGSAMMTRFPWVRLVGGPRHIGDLPEALERVMA 117

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G+RV   D   ED    + +      R     A++TI  GCD FCT+C+VPY RG  +SR
Sbjct: 118 GERVSLLD---EDSRAFVDLAVPPIERVNPWKAYVTIAHGCDNFCTYCIVPYVRGRFVSR 174

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
               ++ E R L+++GV EITLLGQNVN++     +G   TFS LL  ++ I GL  +R+
Sbjct: 175 FPEDILVEIRGLVEDGVKEITLLGQNVNSYGQDFKNG--YTFSSLLRDVAAIDGLPLIRF 232

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
            TSHP+D +  +++       + P ++LP+QSGSDRILK MNR++T  +YR+ +  IR+ 
Sbjct: 233 VTSHPKDFTPDIVEVMAHHPKICPSINLPIQSGSDRILKKMNRKYTLAKYRETVSVIRNA 292

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P++ ++SD IVGFPGET++DF+A++  + +  Y    +  YSPR GT  S M +Q+D++
Sbjct: 293 LPEVGLTSDLIVGFPGETEEDFQASVAALHEFRYDLVHTAAYSPREGTAASTMEDQIDQD 352

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GRSPWLQSVVLNSKN 444
           VK +RL  +     E  +  N   VG+  ++LI+    +   LV GR+P  + V++    
Sbjct: 353 VKMKRLNTVNAVQSEIALQINRGLVGKRYKILIDDWAPKGESLVQGRTPGDKVVIMEGTE 412

Query: 445 HNIGDIIKVRITDVKISTLYGELV 468
             IG    V IT  +   L+GE++
Sbjct: 413 EFIGRFALVSITSAENWCLHGEVI 436


>gi|308233434|ref|ZP_07664171.1| RNA modification enzyme, MiaB family protein [Atopobium vaginae DSM
           15829]
          Length = 455

 Score =  412 bits (1058), Expect = e-113,   Method: Composition-based stats.
 Identities = 173/452 (38%), Positives = 262/452 (57%), Gaps = 14/452 (3%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           +V + + +K++GCQMN++DS R+  +    G   V + ++AD+++  TC +REKA   +Y
Sbjct: 7   LVGKTYLIKTFGCQMNLHDSERVAGLLDDCGANEVATFEEADIVIFMTCSVREKADTHLY 66

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
              G + NL        G  ++ V GC+AQ +G ++    P V+VV G      +PELL 
Sbjct: 67  ---GAVSNLVTLPPSPCGKRVIAVGGCIAQRDGAKLREHVPNVDVVFGTSALASVPELLC 123

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
            A       D  +    +  R    D    R +   A++ I  GC+ FCTFC+VPY RG 
Sbjct: 124 EAFESND--DEVFVDTIEKNRGFSTDLPSKRDQSFHAWVPIMTGCNNFCTFCIVPYVRGR 181

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR L +VVDE R+L D+GV E+TLLGQNVN+  G+ L  +K  F++LL  + E+ G+ 
Sbjct: 182 ERSRVLERVVDEVRRLKDDGVREVTLLGQNVNS-YGRDLY-KKPCFAELLRKVGEV-GIE 238

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+T+S+P+D+SD  I A  +   +MP LHL VQSGS RILK+M+R +T  +Y ++ID 
Sbjct: 239 RIRFTSSNPKDLSDETIAAMAETPAVMPQLHLAVQSGSTRILKAMHRSYTREKYLEVIDH 298

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           ++S  PDIA+S+D IVGFPGET++DF  T+ LV ++ Y+ AF+F YS R GTP +N+ + 
Sbjct: 299 LKSAMPDIALSTDIIVGFPGETEEDFEETLSLVREVEYSSAFTFIYSKRPGTPAANIEDT 358

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440
               V  +R   L   + E     N   +  ++  L+E   K+    LVG SP  Q+V+ 
Sbjct: 359 TPHEVIQQRFNRLTDLIEELAYKANQKELHTLVTSLVEGTSKKDSHVLVGHSPKNQTVLF 418

Query: 441 N-----SKNHNIGDIIKVRITDVKISTLYGEL 467
           +     S    IG + +V + + K   L G+L
Sbjct: 419 SLPKDASAQDYIGKMCEVYVEEAKTWYLRGKL 450


>gi|224372319|ref|YP_002606691.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Nautilia
           profundicola AmH]
 gi|223588403|gb|ACM92139.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Nautilia profundicola
           AmH]
          Length = 422

 Score =  412 bits (1058), Expect = e-113,   Method: Composition-based stats.
 Identities = 161/445 (36%), Positives = 253/445 (56%), Gaps = 25/445 (5%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ +++++GCQMNV DS  +      + YE   + +DA+LI+LNTC +REK  +K++S L
Sbjct: 2   KKLYIETFGCQMNVKDSEHIIAELSDE-YETTQNPEDAELILLNTCSVREKPVQKLFSEL 60

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           G ++       K+  +    V GC A   G+EI++R+P V+ V+G +   R+ E L    
Sbjct: 61  GALK-------KKNPNAKFGVCGCTASHMGKEIIKRAPFVSFVLGARNVSRIKEALNTP- 112

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
              + V TD + +D             RK     F+ I  GCDK C+FC+VP TRG E+S
Sbjct: 113 ---KAVITDINYDDTTYIFKNT-----RKNPYKDFVNIMVGCDKKCSFCIVPKTRGKELS 164

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG-LDGEKCTFSDLLYSLSEIKGLVRL 263
             +  ++ +  KL   GV EITLLGQNVN +  +  ++  K  F+DLL  +S+I G+ R+
Sbjct: 165 IPMDLIIKQIEKLAKEGVKEITLLGQNVNNYGKRFSVEHPKVDFTDLLKEVSKIDGIERI 224

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+T+ HP    D  +    +   +  ++H P+QSGS  ILK+M R +T   +    + IR
Sbjct: 225 RFTSPHPLHADDRFLDEFANNPKICKHIHFPLQSGSSEILKAMRRGYTKEWFLNRCEIIR 284

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              PD++I++D IVGFPGE+++DF  TMD+++K+ + Q FSF YSPR  T  + M  QVD
Sbjct: 285 Q-IPDVSITTDIIVGFPGESEEDFEHTMDVLEKVRFEQIFSFVYSPRPLTEAAEMPNQVD 343

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
           +N+  ERL  LQ +  E         +G+I +VLI++ G       G+S    +V +   
Sbjct: 344 KNIAKERLYRLQSRHGEILDEIAKNQIGKIYKVLIDEPG------SGKSDNFFTVKIPET 397

Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468
           N  +G+I+ V+IT+    TL GE++
Sbjct: 398 NKYLGEIVDVKITEANKHTLKGEVI 422


>gi|123969036|ref|YP_001009894.1| 2-methylthioadenine synthetase [Prochlorococcus marinus str.
           AS9601]
 gi|229890604|sp|A2BSM6|MIAB_PROMS RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|123199146|gb|ABM70787.1| 2-methylthioadenine synthetase [Prochlorococcus marinus str.
           AS9601]
          Length = 464

 Score =  412 bits (1058), Expect = e-113,   Method: Composition-based stats.
 Identities = 173/453 (38%), Positives = 262/453 (57%), Gaps = 23/453 (5%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           +++ ++GCQMN  DS RM       GY R ++  +ADL++ NTC IR+ A +KVYSFLGR
Sbjct: 21  YWITTFGCQMNKADSERMAGTLEKMGYTRADNELNADLVLYNTCTIRDNAEQKVYSFLGR 80

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
               K+        L +VVAGC+AQ EGE +LRR P +++V+GPQ    L  LL +   G
Sbjct: 81  QAKRKHKT----PSLKLVVAGCLAQQEGESLLRRVPELDLVMGPQHVNNLENLLGKVDLG 136

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
            +V  T    E+ F    I      R+  +  ++ I  GC++ C++CVVP  RG E SR 
Sbjct: 137 NQVAAT----EENFISEDITSA--RRESSICGWVNIIYGCNERCSYCVVPSVRGKEQSRY 190

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG------EKCTFSDLLYSLSEIKGL 260
            + +  E +KL  +   EITLLGQN++A  G+ L G      ++ T +DLLY + ++KG+
Sbjct: 191 PNAIKSEIQKLAGDNFKEITLLGQNIDA-YGRDLPGTTKEGRKENTLTDLLYYIHDVKGI 249

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+ TSHPR  S  LI+A  +LD +  + H+P QSG+D ILK M+R +T  +Y+ II+
Sbjct: 250 RRIRFATSHPRYFSKRLIQACYELDKVCEHFHIPFQSGNDEILKQMSRGYTIKKYKNIIE 309

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
            IRS+ PD +I++D IV FPGET+  ++ T+ L+ +IG+ Q  +  YSPR  TP +    
Sbjct: 310 NIRSLMPDASITADAIVAFPGETEKQYQDTLKLITEIGFDQVNTAAYSPRPNTPAAVWSN 369

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSVV 439
           Q+ E VK  RL  +   + +   S N   +  I  VLIE  + K   +++GR+   +   
Sbjct: 370 QLSEEVKKARLQEINDLVEKTARSRNKRYINNIESVLIEGLNPKNSSQIMGRTRTNRLTF 429

Query: 440 LNSKNH-----NIGDIIKVRITDVKISTLYGEL 467
           +    +     ++GD I VRI + +  +L GEL
Sbjct: 430 VEIPKNIDFNFSLGDEIDVRINETRPFSLTGEL 462


>gi|318042484|ref|ZP_07974440.1| hypothetical protein SCB01_12282 [Synechococcus sp. CB0101]
          Length = 473

 Score =  412 bits (1058), Expect = e-113,   Method: Composition-based stats.
 Identities = 133/466 (28%), Positives = 226/466 (48%), Gaps = 24/466 (5%)

Query: 12  HMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCH 71
            ++S  + Q            GC+ N  D+  M  +    GY       DA+++V+NTC 
Sbjct: 6   PLISHPMSQTSTKPTVAFAHLGCEKNRVDTEHMLGLLAQAGYGVSADESDANVVVVNTCS 65

Query: 72  IREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ 131
             + A E+    L  +               +++AGC+AQ   +E+L   P    +VG  
Sbjct: 66  FIQDAREESVRTLVELAEQGKE---------LIIAGCLAQHFQDELLESLPEAKAIVGTG 116

Query: 132 TYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCT 191
            Y  +  +LER   G+RV     +     +        Y       A+L + EGCD  C 
Sbjct: 117 DYQHIVSVLERVEAGERVKQVSANPTFVADEHLP---RYRTTSEAVAYLKVAEGCDYRCA 173

Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLL 251
           FC++P+ RG + SR++  +V EA++L   GV E+ L+ Q +    G  L G K   ++LL
Sbjct: 174 FCIIPHLRGDQRSRTIESIVAEAQQLAAQGVKELVLISQ-ITTNYGLDLAG-KPQLAELL 231

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
            +L E++ +  +R   ++P  +++ +++A+ ++  ++PYL LP+Q     +L++MNR   
Sbjct: 232 RALGEVE-IPWIRVHYAYPTGLTEAVLEAYREVPNVLPYLDLPLQHSHPEVLRAMNRPWQ 290

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
           A     ++ RIR   PD  + + FIVG+PGET++ F+  +D V +  +     F +SP  
Sbjct: 291 ADVTGGVLRRIREQLPDAVLRTTFIVGYPGETEEHFQHLLDFVAEQRFDHVGVFTFSPEE 350

Query: 372 GTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR 431
           GTP + + +QV   V AER   L    +      N A VG+I++VLIE+     G+++GR
Sbjct: 351 GTPAAELPDQVPAEVAAERKDRLMALQQPIAAERNAAWVGRIVDVLIEQENPGTGEMIGR 410

Query: 432 ----SPWLQSV--VLNSKNHN---IGDIIKVRITDVKISTLYGELV 468
               +P +     V+  +       G ++ VRIT      L GE+V
Sbjct: 411 CARFAPEVDGEVRVMPGEGGLCAAPGTMVPVRITAADTYDLIGEVV 456


>gi|220916715|ref|YP_002492019.1| RNA modification enzyme, MiaB family [Anaeromyxobacter dehalogenans
           2CP-1]
 gi|219954569|gb|ACL64953.1| RNA modification enzyme, MiaB family [Anaeromyxobacter dehalogenans
           2CP-1]
          Length = 464

 Score =  411 bits (1057), Expect = e-112,   Method: Composition-based stats.
 Identities = 192/477 (40%), Positives = 271/477 (56%), Gaps = 24/477 (5%)

Query: 1   MGLFIKLIGVAHMVS--QIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNS 58
           M   + L      V+   +      P++ +V ++GCQMN  DS RM ++     Y R  S
Sbjct: 1   MSDLVPLSRKPAPVAGDPVPSPAAPPRKVYVHTFGCQMNESDSDRMVELLGRHAYARAAS 60

Query: 59  MDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEIL 118
            D+ADLI+LNTC +REKA +K+ S LGR R +K          L+ V+GCVAQ E + +L
Sbjct: 61  ADEADLILLNTCAVREKAEQKLLSALGRYREVKAR-----RGALIAVSGCVAQQEKDRLL 115

Query: 119 RRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTA 178
            R P V+ V GP    RLPE++ERAR  +R  +T +   +++      D    R R VTA
Sbjct: 116 ARVPYVDFVFGPDNIGRLPEMVERAR-DERFAETGWMDSEEY-VFPRADPEAARGR-VTA 172

Query: 179 FLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK 238
           F+T  +GCD  C FC+VP+TRG E+SR    VV E   L   GV E+TL+GQNVN++ G 
Sbjct: 173 FVTAMKGCDNVCAFCIVPHTRGREVSRPFPDVVAECAALAGVGVREVTLIGQNVNSYTG- 231

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
                 CTF+DLL  ++ + G+ R+R+TTSHP D+SD L++   D   +MP+ HLPVQSG
Sbjct: 232 -----GCTFADLLRRVAAVPGIDRIRFTTSHPHDLSDALVEVFRDEPKVMPHFHLPVQSG 286

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           SD +L+ M R ++  EY    DR+R+ RP IAI++DFIVGFPGETD DF A++ L+++  
Sbjct: 287 SDAVLRRMRRDYSVAEYLDRFDRLRAARPGIAITTDFIVGFPGETDADFEASLALLERAR 346

Query: 359 YAQAFSFKYSPRLGTPGSNMLE------QVDENVKAERLLCLQKKLREQQVSFNDACVGQ 412
           + Q+FSF +SPR  T  +  L        V       RL  L    R          +G+
Sbjct: 347 FEQSFSFVFSPRPHTVAAVRLGSAPEWQDVPRGTAVARLERLLAAQRRIAGEILAGELGK 406

Query: 413 IIEVLIEKHGKEKGKLVGRSPWLQSVVL--NSKNHNIGDIIKVRITDVKISTLYGEL 467
           ++EVL+E    E G+ +GR+P  + V L  +      G  + VRIT    S+L G L
Sbjct: 407 VVEVLVEGPSDEPGERLGRTPENRVVHLAADEAAAPAGARVAVRITRAGGSSLSGTL 463


>gi|189426248|ref|YP_001953425.1| MiaB-like tRNA modifying enzyme YliG [Geobacter lovleyi SZ]
 gi|238066235|sp|B3EAM2|RIMO_GEOLS RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|189422507|gb|ACD96905.1| MiaB-like tRNA modifying enzyme YliG [Geobacter lovleyi SZ]
          Length = 449

 Score =  411 bits (1057), Expect = e-112,   Method: Composition-based stats.
 Identities = 150/457 (32%), Positives = 235/457 (51%), Gaps = 23/457 (5%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           +  Q+  + S GC  N+ D+  M  +   QGYE      +AD+I++NTC   ++A E+  
Sbjct: 4   LAKQKVSMVSLGCPKNLVDAEVMLGVLAQQGYEITMDEKEADVIIVNTCSFIKEAREESV 63

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             +  + + K+    +G    +VVAGC+ Q   EE+ +  P V++++G   Y R+ E+L 
Sbjct: 64  DAILDLADRKS----DGNCKTLVVAGCLPQRYQEELAKELPEVDILIGTGDYPRVAEILA 119

Query: 142 RARFG----KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197
               G    K V D +Y  ++   RL+   G Y       A+L I EGC   CT+CV+P 
Sbjct: 120 EHHAGDAQIKYVGDPNYIYDEDLPRLNSSPGWY-------AYLKIGEGCSNCCTYCVIPS 172

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257
            RG   SR +  +V EA +L+  GV E+ L+ Q++    G  +D +  + + L+  L+ I
Sbjct: 173 LRGPYRSRPVEALVAEAERLVKGGVRELILVSQDIT-RYGSDMD-DTSSLAGLIRRLAAI 230

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
           + L  +R   ++P  +SD LI+       L  YL +P+Q  SD +L+ M RR +  + R 
Sbjct: 231 EDLKWIRLLYAYPDGISDELIELFKTEPKLCNYLDIPIQHISDNVLQRMKRRSSEEQIRT 290

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
           +I R+R+  P I + +  IVGFPGET DDF      V+K  + +   F YS   GTP + 
Sbjct: 291 LIARLRNEIPGITLRTSLIVGFPGETVDDFLNLTQFVEKAQFDRLGVFCYSREEGTPAAE 350

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GRS---- 432
           M +QV E VK ER   L K         N A VGQ  +V++E + +E   L+ GR+    
Sbjct: 351 MPDQVSERVKRERHRKLMKTQARVSFRRNRAMVGQTEQVIVEGYSEETELLLKGRTSRQA 410

Query: 433 PWLQS-VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           P +   V + S +  IGDI+  +ITD     L  E++
Sbjct: 411 PDIDGQVYITSGHAEIGDIVACKITDSSDYDLVAEMI 447


>gi|157413867|ref|YP_001484733.1| (dimethylallyl)adenosine tRNA methylthiotransferase
           [Prochlorococcus marinus str. MIT 9215]
 gi|229890599|sp|A8G6B6|MIAB_PROM2 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|157388442|gb|ABV51147.1| 2-methylthioadenine synthetase [Prochlorococcus marinus str. MIT
           9215]
          Length = 464

 Score =  411 bits (1057), Expect = e-112,   Method: Composition-based stats.
 Identities = 167/451 (37%), Positives = 258/451 (57%), Gaps = 23/451 (5%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           +++ ++GCQMN  DS RM       GY R +    ADL++ NTC IR+ A +KVYSFLGR
Sbjct: 21  YWITTFGCQMNKADSERMAGTLEKMGYTRADDELKADLVLYNTCTIRDNAEQKVYSFLGR 80

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
               K+        L +VVAGC+AQ EGE +LRR P +++V+GPQ    L  LL +   G
Sbjct: 81  QAKRKHKI----PSLKLVVAGCLAQQEGESLLRRVPELDLVMGPQHVNNLENLLGKVDLG 136

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
            +V  T    E+ F    I      R+  +  ++ I  GC++ C++CVVP  RG E SR 
Sbjct: 137 NQVAAT----EETFISEDIT--NARRESSICGWVNIIYGCNERCSYCVVPSVRGKEQSRY 190

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG------EKCTFSDLLYSLSEIKGL 260
              +  E +KL ++   EITLLGQN++A  G+ L G      ++ T +DLLY + +++G+
Sbjct: 191 PDAIKSEIQKLANDNFKEITLLGQNIDA-YGRDLPGTTKEGRKENTLTDLLYYIHDVEGI 249

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+ TSHPR  S  LI+A  +LD +  + H+P QSG++ ILK M R +T  +Y++II+
Sbjct: 250 RRIRFATSHPRYFSRRLIQACYELDKVCEHFHIPFQSGNNEILKLMARGYTIDKYKRIIE 309

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
            IRS+ P+ +I++D IV FPGE+++ +R T+ L+  IG+ Q  +  YSPR  TP +    
Sbjct: 310 NIRSLMPNASITADAIVAFPGESEEQYRDTLKLISDIGFDQVMTAAYSPRPNTPAALWHN 369

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVV 439
           Q+ E VK ERL  + + +       N+  +  I  VLIE    K   +++GR+   +   
Sbjct: 370 QISEEVKKERLKEINELVETTSKQRNERYLDSIESVLIEGFNPKNSSQIMGRTRTNRLTF 429

Query: 440 LNSKNH-----NIGDIIKVRITDVKISTLYG 465
           +    +     ++GD I V+I + +  +L G
Sbjct: 430 VEIPKNIKFNFSLGDEIDVKINEARPFSLTG 460


>gi|320527236|ref|ZP_08028422.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Solobacterium moorei
           F0204]
 gi|320132427|gb|EFW24971.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Solobacterium moorei
           F0204]
          Length = 477

 Score =  411 bits (1057), Expect = e-112,   Method: Composition-based stats.
 Identities = 168/447 (37%), Positives = 242/447 (54%), Gaps = 14/447 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +++F+ +YGCQ NV D   +  M    GY   N  DDAD++  NTC IR+ A ++V S +
Sbjct: 42  KKYFIHTYGCQANVRDGEALAGMMEMMGYTSTNVPDDADVLFFNTCAIRKAAEDRVLSDV 101

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
            ++R LK  R       +  + GC+AQ E   + IL  SP V+++ G    +R+P LL  
Sbjct: 102 NKLRYLKEQR----PTTVFCICGCMAQEEETVKRILSVSPHVDLIFGTHNIHRMPNLLAE 157

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
                +     +S E       + D    R      F+ I  GCDKFCT+C+VPYTRG E
Sbjct: 158 VIQSNQRKVEVFSQEGDV----VEDVPVKRSMDSKGFVNIMYGCDKFCTYCIVPYTRGRE 213

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR +  ++ E  +L  +G  E+ LLGQNVNA  GK L  E   F+ LL ++++  G+ R
Sbjct: 214 RSRRMEDILREVEELKASGRKEVVLLGQNVNA-YGKDLKMED-GFTQLLVAVAK-TGIER 270

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           + + TSHPRD S   I A  D   +MP+LHLPVQSGS+ +L+ M R +T   Y+Q+ + +
Sbjct: 271 ISFYTSHPRDYSATTIDAMRDYPNIMPFLHLPVQSGSNEVLRRMARGYTVERYKQLYNDL 330

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           +   P IA ++D IVGFP ETD++F AT+DLV    +  A++F YSPR GTP +NM + +
Sbjct: 331 KKKVPHIAFTTDLIVGFPNETDEEFEATLDLVRYCRFDMAYAFIYSPRAGTPAANMEDNI 390

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVLN 441
              VK ERL  L   L E     N   +G+I+ VL     K   +   G S   + V   
Sbjct: 391 PLEVKKERLARLNDLLTEIAEENNRRFLGEIVSVLCIGTSKRNSEVYSGYSKDNKLVNFT 450

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
           S+   I  I+ V IT      L G+ +
Sbjct: 451 SEKDCINQIVNVEITATHSYYLEGKAL 477


>gi|253574631|ref|ZP_04851971.1| MiaB-like tRNA modifying enzyme [Paenibacillus sp. oral taxon 786
           str. D14]
 gi|251845677|gb|EES73685.1| MiaB-like tRNA modifying enzyme [Paenibacillus sp. oral taxon 786
           str. D14]
          Length = 447

 Score =  411 bits (1057), Expect = e-112,   Method: Composition-based stats.
 Identities = 140/450 (31%), Positives = 240/450 (53%), Gaps = 18/450 (4%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDA-DLIVLNTCHIREKAAEKVY 81
           +P      + GC++N YD+  +  +F ++GYE+V+    A D+ ++NTC +     +K  
Sbjct: 1   MP-TVAFYTLGCKVNFYDTEAIWQLFKNEGYEQVDFEQSAADVYLINTCTVTNTGDKKSR 59

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             + R        ++   D ++ V GC AQ    EIL   P V++V+G Q   ++   ++
Sbjct: 60  QIIRRA-------VRRNPDAIIAVTGCYAQTSPAEILD-IPGVDLVIGTQDRDKIIPYVK 111

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           + +  ++ ++   ++    E   +     +      A+L IQEGC+ FCTFC++P++RG+
Sbjct: 112 QLQEQRKPINAVRNIMKTREFEEL--DVPSFADHTRAYLKIQEGCNNFCTFCIIPWSRGL 169

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
             SR    V+ +AR+L+  G  EI L G +     G G D E    SDLL+ L +++GL 
Sbjct: 170 SRSRDPQSVIQQARQLVAAGYKEIVLTGIHTG---GYGDDLENYRLSDLLWDLDKVEGLG 226

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R ++     + D ++    +   +  + H+P+Q+GS+ +LK M R++T  E+   I  
Sbjct: 227 RIRISSIEASQIDDRMLDVLKNSSKMCRHFHIPLQAGSNEVLKRMRRKYTIEEFEHKIKM 286

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           IR   PD+AI++D IVGFPGETD+ FR   + + +IG+++   F YS R GTP + M +Q
Sbjct: 287 IRDFMPDVAITTDVIVGFPGETDELFREGFEAIKRIGFSEMHVFPYSKRSGTPAARMEDQ 346

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK---EKGKLVGRSPWLQSV 438
           VDE VK  R+  L     + Q+++ +  VGQ+++V+ EK  K     G + G S     +
Sbjct: 347 VDEEVKHARVHELIDLSEQMQLAYAEKFVGQVLDVIPEKDEKGTAGDGYVTGFSDNYLQI 406

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468
                    G I +V++T    +T  G+LV
Sbjct: 407 RFPGTPDLTGKICRVKLTQADANTCEGQLV 436


>gi|294790986|ref|ZP_06756144.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Scardovia inopinata
           F0304]
 gi|294458883|gb|EFG27236.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Scardovia inopinata
           F0304]
          Length = 483

 Score =  411 bits (1056), Expect = e-112,   Method: Composition-based stats.
 Identities = 161/452 (35%), Positives = 250/452 (55%), Gaps = 22/452 (4%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVN----SMDDADLIVLNTCHIREKAAEKVYS 82
           ++V + GCQMNV+DS R+  +  + GY +        +D DLIV+NTC +RE A+ ++Y 
Sbjct: 31  YYVHTLGCQMNVHDSERIAGVLEADGYVKATRRQIENNDLDLIVMNTCAVRENASNRMYG 90

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            LG+   LK    +E   L + V GC+AQ +   I++R+P V+ V G +    L  LL++
Sbjct: 91  TLGQWAELK----RERPGLQIAVGGCMAQKDRRRIVQRAPWVDAVFGTKNIGSLTGLLKK 146

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           AR   R      +  D F           R   V++++ I  GC+  CTFC+VP  RG E
Sbjct: 147 ARLENRSQVQVATDLDYF----PSQLPAARASRVSSWVAISVGCNNTCTFCIVPSVRGKE 202

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
             R    ++DE ++ +D G  EITLLGQNVN++      G++  FS LL +  +I GL R
Sbjct: 203 RDRRPGDILDEIQRCVDAGAKEITLLGQNVNSYGYST--GDRYAFSKLLRACGKIDGLKR 260

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+T+ HP   +D +I+A  + D +M  LH+P+QSGSDRIL++M R +    ++ IID++
Sbjct: 261 VRFTSPHPAAFTDDVIEAMAETDNVMHQLHMPLQSGSDRILRAMRRSYRVSRFKGIIDKV 320

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+  PD  I++D IVGFPGET+DDF+ TMDL+ +I ++ A++F+YSPR GTP + M EQ+
Sbjct: 321 RAAMPDAQITTDIIVGFPGETEDDFQQTMDLLRQIRFSSAYTFEYSPRPGTPAALM-EQI 379

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG---KLVGRSPWLQSVV 439
              V  +R   L               +G+ +EVL+   G++     ++ GR      V 
Sbjct: 380 PPEVMRDRYTRLHDMQETITAQEMQKFLGRTVEVLVTGQGRKDSNTHRVTGRERTGALVH 439

Query: 440 --LNSKNHNI--GDIIKVRITDVKISTLYGEL 467
             + +       GD +   +TD     L  + 
Sbjct: 440 IGVPAGQEIPQTGDFVDCTVTDSSRHYLLADP 471


>gi|226226860|ref|YP_002760966.1| hypothetical protein GAU_1454 [Gemmatimonas aurantiaca T-27]
 gi|226090051|dbj|BAH38496.1| hypothetical protein [Gemmatimonas aurantiaca T-27]
          Length = 451

 Score =  411 bits (1056), Expect = e-112,   Method: Composition-based stats.
 Identities = 166/435 (38%), Positives = 256/435 (58%), Gaps = 20/435 (4%)

Query: 23  VPQR--FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKV 80
           + ++   ++++YGCQMNV DS  M     + GYE V++ D AD+I++NTC IRE A  +V
Sbjct: 1   MTKKPTVYIETYGCQMNVADSELMYGKLVAHGYEPVDAPDGADVILVNTCAIRENAETRV 60

Query: 81  YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140
              LG +R           D +V V GC+AQ  G  +L ++  V++VVGP  Y  LP LL
Sbjct: 61  IGRLGELRRYMK------PDTIVGVTGCMAQRLGPRVLEQARHVSLVVGPDGYRALPALL 114

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           + AR G++   TD+ +E+ +E     D    R  GV A++ +Q GCD  CT+C+VP+TRG
Sbjct: 115 DGARRGEKFTATDFDLEEHYE-----DVVARRFEGVKAWIPVQRGCDYRCTYCIVPFTRG 169

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E SR L  VV E +++++ G+ E+ LLGQ VN++     D     F+DLL ++  + G+
Sbjct: 170 PERSRKLDDVVREVQQVVEQGLSEVVLLGQTVNSYTDGTHD-----FADLLRAVGAVDGI 224

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+RYT+ HP D SD +I A   +  +  ++HLP+QSGS  +LK M RR++  EY   + 
Sbjct: 225 RRVRYTSPHPNDFSDRVIDAMASVATVCEHIHLPMQSGSTSMLKRMLRRYSREEYLDCVA 284

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           R+R+  P +++++D IVGFPGETD +F  T+ L  ++ +  AF FK+SPR GTP + M  
Sbjct: 285 RMRAAIPGLSLTTDIIVGFPGETDAEFEDTLSLCQEVRFDDAFMFKFSPREGTPATRMPA 344

Query: 381 Q--VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSV 438
              + ++V A R   L K +R      N   +G  +EVLIEK  ++      RS   ++V
Sbjct: 345 DWTIPDDVMAARFDRLVKTVRGISRENNLKRLGDTVEVLIEKLARDGELWQARSRDFKTV 404

Query: 439 VLNSKNHNIGDIIKV 453
           ++ +    IGD ++V
Sbjct: 405 MVPADAGKIGDYLRV 419


>gi|126696829|ref|YP_001091715.1| 2-methylthioadenine synthetase [Prochlorococcus marinus str. MIT
           9301]
 gi|229890597|sp|A3PED9|MIAB_PROM0 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|126543872|gb|ABO18114.1| 2-methylthioadenine synthetase [Prochlorococcus marinus str. MIT
           9301]
          Length = 464

 Score =  411 bits (1056), Expect = e-112,   Method: Composition-based stats.
 Identities = 176/473 (37%), Positives = 270/473 (57%), Gaps = 29/473 (6%)

Query: 13  MVSQIVDQCIVPQR------FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIV 66
           M+++     I  Q+      +++ ++GCQMN  DS RM       GY R ++  +ADL++
Sbjct: 1   MLTKTKSDEIKTQKDSTTGSYWITTFGCQMNKADSERMAGTLEKMGYTRADNELNADLVL 60

Query: 67  LNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNV 126
            NTC IR+ A +KVYSFLGR    K+        L +VVAGC+AQ EGE +LRR P +++
Sbjct: 61  YNTCTIRDNAEQKVYSFLGRQAKRKHKT----PRLKLVVAGCLAQQEGESLLRRVPELDL 116

Query: 127 VVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGC 186
           V+GPQ    L  LL +   G +VV T    E+ F    I      R+  +  ++ I  GC
Sbjct: 117 VMGPQHVNNLENLLGKVDLGNQVVAT----EETFISEDITSA--RRESSICGWVNIIYGC 170

Query: 187 DKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG---- 242
           ++ C++CVVP  RG E SR  + +  E +KL D+   EITLLGQN++A  G+ L G    
Sbjct: 171 NERCSYCVVPSVRGKEQSRYPNAIKSEIQKLADDNFKEITLLGQNIDA-YGRDLPGTTKE 229

Query: 243 --EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300
             ++ T +DLLY + ++KG+ R+R+ TSHPR  S  LI+A  +LD +  + H+P QSG+D
Sbjct: 230 GRKENTLTDLLYYIHDVKGIRRIRFATSHPRYFSKRLIQACYELDKVCEHFHIPFQSGND 289

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
            ILK M+R ++  +Y+ II+ IRS+ PD +I++D IV FPGET+  ++ T+ L+ +IG+ 
Sbjct: 290 EILKQMSRGYSIKKYKNIIENIRSLMPDASITADAIVAFPGETEKQYQDTLKLISEIGFD 349

Query: 361 QAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
           Q  +  YS R  TP +    Q+ E VK  RL  +   + +   S N   +  I  VLIE 
Sbjct: 350 QVNTAAYSARPNTPAAVWTNQLSEEVKKARLQEINDLVEKTARSRNQRYIDNIESVLIEG 409

Query: 421 -HGKEKGKLVGRSPWLQSVVLNSKNH-----NIGDIIKVRITDVKISTLYGEL 467
            + K   +++GR+   +   +    +     ++GD I VRI + +  +L GEL
Sbjct: 410 LNPKNSSQIMGRTRTNRLTFVEIPKNINFNFSLGDEINVRINEARPFSLTGEL 462


>gi|328944037|ref|ZP_08241502.1| tRNA-I(6)A37 thiotransferase [Atopobium vaginae DSM 15829]
 gi|327492006|gb|EGF23780.1| tRNA-I(6)A37 thiotransferase [Atopobium vaginae DSM 15829]
          Length = 460

 Score =  411 bits (1056), Expect = e-112,   Method: Composition-based stats.
 Identities = 173/452 (38%), Positives = 262/452 (57%), Gaps = 14/452 (3%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           +V + + +K++GCQMN++DS R+  +    G   V + ++AD+++  TC +REKA   +Y
Sbjct: 12  LVGKTYLIKTFGCQMNLHDSERVAGLLDDCGANEVATFEEADIVIFMTCSVREKADTHLY 71

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
              G + NL        G  ++ V GC+AQ +G ++    P V+VV G      +PELL 
Sbjct: 72  ---GAVSNLVTLPPSPCGKRVIAVGGCIAQRDGAKLREHVPNVDVVFGTSALASVPELLC 128

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
            A       D  +    +  R    D    R +   A++ I  GC+ FCTFC+VPY RG 
Sbjct: 129 EAFESND--DEVFVDTIEKNRGFSTDLPSKRDQSFHAWVPIMTGCNNFCTFCIVPYVRGR 186

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR L +VVDE R+L D+GV E+TLLGQNVN+  G+ L  +K  F++LL  + E+ G+ 
Sbjct: 187 ERSRVLERVVDEVRRLKDDGVREVTLLGQNVNS-YGRDLY-KKPCFAELLRKVGEV-GIE 243

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+T+S+P+D+SD  I A  +   +MP LHL VQSGS RILK+M+R +T  +Y ++ID 
Sbjct: 244 RIRFTSSNPKDLSDETIAAMAETPAVMPQLHLAVQSGSTRILKAMHRSYTREKYLEVIDH 303

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           ++S  PDIA+S+D IVGFPGET++DF  T+ LV ++ Y+ AF+F YS R GTP +N+ + 
Sbjct: 304 LKSAMPDIALSTDIIVGFPGETEEDFEETLSLVREVEYSSAFTFIYSKRPGTPAANIEDT 363

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440
               V  +R   L   + E     N   +  ++  L+E   K+    LVG SP  Q+V+ 
Sbjct: 364 TPHEVIQQRFNRLTDLIEELAYKANQKELHTLVTSLVEGTSKKDSHVLVGHSPKNQTVLF 423

Query: 441 N-----SKNHNIGDIIKVRITDVKISTLYGEL 467
           +     S    IG + +V + + K   L G+L
Sbjct: 424 SLPKDASAQDYIGKMCEVYVEEAKTWYLRGKL 455


>gi|238065381|sp|Q2IM41|RIMO_ANADE RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
          Length = 470

 Score =  411 bits (1056), Expect = e-112,   Method: Composition-based stats.
 Identities = 141/450 (31%), Positives = 224/450 (49%), Gaps = 18/450 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R ++ + GC  N  DS  M       GY  V     A++IV+NTC   E A E+    + 
Sbjct: 4   RVYMHTLGCPKNRVDSEVMLGTLAEAGYRLVQDPAKAEVIVVNTCGFIESAKEESVEAIV 63

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            + + K    +EG    +VV GC+ Q   EE+ R  P V+  +G   Y  +  ++  A+ 
Sbjct: 64  ELADQK----REGRCRKLVVTGCLVQRHAEELARELPEVDHFLGTGAYQDVARIVSDAQA 119

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            + VV       D     S      N     TA+L I EGCD  C FC++P  RG + SR
Sbjct: 120 KRLVV------PDPDFVHSAATPRVNSLPSHTAYLKIAEGCDNACAFCIIPKLRGGQRSR 173

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            +  +V EA  L   G  E++L+ Q++ A  G+ L G K     LL  L+++ GL  +R 
Sbjct: 174 PIDDLVAEAAALAAQGTVELSLVAQDLTA-YGQDLPG-KVRLHHLLPELAKVDGLRWIRL 231

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
             ++PRD+ D L+ A  D   ++ YL +P+Q  SDR+L++M R   +   R ++ R+R+ 
Sbjct: 232 HYAYPRDVPDALVAAMADEPKIVKYLDMPLQHSSDRLLRAMKRGRDSVFLRDLLARLRAR 291

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P +A+ +  IVG PGET+ DF   +  V++  + +   F+YSP  GTP + M +QV + 
Sbjct: 292 IPGLALRTALIVGLPGETEADFEDLLRFVEEQRFERLGVFEYSPEEGTPAAEMADQVPDA 351

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GR----SPWLQSV-V 439
           +K ER   +    +    +   A +G+ +EVL+E   +E   L+ GR    +P +  +  
Sbjct: 352 LKRERRDRIMAVQQGISRAHQQAMIGRRLEVLVEGRAEETEHLLAGRHAQQAPEIDGLTY 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELVV 469
           +N      G+I+ V ITD     L G +V 
Sbjct: 412 VNDGVAYPGEIVTVEITDAAEYDLVGRVVA 441


>gi|15643418|ref|NP_228462.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Thermotoga
           maritima MSB8]
 gi|81553183|sp|Q9WZC1|MIAB_THEMA RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|4981175|gb|AAD35737.1|AE001738_17 conserved hypothetical protein [Thermotoga maritima MSB8]
          Length = 443

 Score =  411 bits (1056), Expect = e-112,   Method: Composition-based stats.
 Identities = 160/444 (36%), Positives = 258/444 (58%), Gaps = 16/444 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           RF++K++GCQMN  DS  M  +   +G+   +S ++AD++++NTC +R K+ EK YS LG
Sbjct: 2   RFYIKTFGCQMNENDSEAMAGLLVKEGFTPASSPEEADVVIINTCAVRRKSEEKAYSELG 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           ++      ++K+   ++V VAGCVA+ E E+ L +    + V+G +   R+ E +++A  
Sbjct: 62  QV-----LKLKKKKKIVVGVAGCVAEKEREKFLEK--GADFVLGTRAVPRVTEAVKKALE 114

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G++V   +  +++    L  +     R     A++TI  GCD+FCT+C+VPYTRG E SR
Sbjct: 115 GEKVALFEDHLDEYTHELPRI-----RTSRHHAWVTIIHGCDRFCTYCIVPYTRGRERSR 169

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            ++ +++E +KL + G  E+T LGQNV+A  GK L  +  + + LL   S+I+G+ R+ +
Sbjct: 170 PMADILEEVKKLAEQGYREVTFLGQNVDA-YGKDLK-DGSSLAKLLEEASKIEGIERIWF 227

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
            TS+P D SD LI+       +   +HLPVQSGS+RILK MNRR+T  EY  ++++IRS 
Sbjct: 228 LTSYPTDFSDELIEVIAKNPKVAKSVHLPVQSGSNRILKLMNRRYTKEEYLALLEKIRSK 287

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML-EQVDE 384
            P++AISSD IVGFP ET++DF  T+DLV+K  + +     YSPR GT       + V  
Sbjct: 288 VPEVAISSDIIVGFPTETEEDFMETVDLVEKAQFERLNLAIYSPREGTVAWKYYKDDVPY 347

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
             K  R+  L    +      N+   G+ + +++E   K  G   GR    + +    ++
Sbjct: 348 EEKVRRMQFLMNLQKRINRKLNERYRGKTVRIIVEAQAK-NGLFYGRDIRNKIIAFEGED 406

Query: 445 HNIGDIIKVRITDVKISTLYGELV 468
             IG    V++  +    LYG++V
Sbjct: 407 WMIGRFADVKVEKITAGPLYGKVV 430


>gi|294055618|ref|YP_003549276.1| RNA modification enzyme, MiaB family [Coraliomargarita akajimensis
           DSM 45221]
 gi|293614951|gb|ADE55106.1| RNA modification enzyme, MiaB family [Coraliomargarita akajimensis
           DSM 45221]
          Length = 461

 Score =  411 bits (1056), Expect = e-112,   Method: Composition-based stats.
 Identities = 167/451 (37%), Positives = 267/451 (59%), Gaps = 11/451 (2%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R ++K+YGCQMN  DS  +  M  ++GY  V S  DAD+I+LNTC +RE+A +K     G
Sbjct: 3   RVYIKTYGCQMNERDSDAVAAMLRAKGYSIVGSESDADVILLNTCSVREQAEQKAIGKAG 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            I   K    K+  +L+V + GC+AQ  G+++L R P ++++VG Q ++R+P+ L+    
Sbjct: 63  HITARK----KKNPNLVVGIMGCMAQNRGDDLLDRLPDLDLIVGTQKFHRVPDHLDNMIA 118

Query: 146 GKR----VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
             +       T   +E +    + +         V+AF++I +GC+  C++C+VP TRG 
Sbjct: 119 SLQGQGPRPSTVVDLEAEAGSQNTIREHAEDTVQVSAFVSIMQGCNMKCSYCIVPKTRGA 178

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD--GEKCTFSDLLYSLSEIKG 259
           E +R + Q+VDE + L   G  E+TLLGQ VN +  +      +K  F  LL  ++EI G
Sbjct: 179 ERARPMDQIVDEIKDLAAKGTKEVTLLGQIVNQYGIREFPFVDKKSPFVQLLEKVNEIDG 238

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           + R+R+T+ HP    D LI+ +  L  L  YLH P+QSGSDR+LK+M R ++   +R+II
Sbjct: 239 IERIRFTSPHPVGFKDDLIECYARLPKLCEYLHFPMQSGSDRVLKAMRRPYSIERFRRII 298

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
           D++R++RPDI IS+D IVGFPGETD+DF  T    +++G+  A+ FKYS R GT    + 
Sbjct: 299 DKLRAIRPDIYISTDVIVGFPGETDEDFELTRKHFEEVGFDMAYLFKYSVRPGTTAEPLG 358

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRSPWLQSV 438
           + +   VK +R   L   L ++ +  N++ +G + +VL E   ++ +   +GR+   + V
Sbjct: 359 DPIATEVKEKRNQILLDILGKRSLERNESLLGTVEDVLFEGPARKGENMFMGRTRGHRKV 418

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
           ++ +    IG ++ VRI     STL+GELV+
Sbjct: 419 IVKASPRLIGQLVPVRIQRATTSTLFGELVL 449


>gi|15613914|ref|NP_242217.1| hypothetical protein BH1351 [Bacillus halodurans C-125]
 gi|10173967|dbj|BAB05070.1| BH1351 [Bacillus halodurans C-125]
          Length = 448

 Score =  411 bits (1056), Expect = e-112,   Method: Composition-based stats.
 Identities = 137/448 (30%), Positives = 242/448 (54%), Gaps = 20/448 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
               ++ GC++N Y++  +  +F  +GYE+V+    AD+ V+NTC +     +K    + 
Sbjct: 3   TVAFQTLGCKVNHYETEAIWQLFKGEGYEKVDFEQMADVYVINTCTVTNTGDKKSRQVIR 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R        I++  D ++ V GC AQ    E++   P V++VVG Q   ++ E +E+ + 
Sbjct: 63  RA-------IRKNPDAVICVTGCYAQTSPAEVMA-IPGVDIVVGTQDRKKMLEYIEQYKK 114

Query: 146 GKRVVDTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            ++ ++   ++     +E L +            A L IQEGC+ FCTFC++P+ RG+  
Sbjct: 115 ERQPINGVGNIMKSRVYEELDVP----AFTDRTRASLKIQEGCNNFCTFCIIPWARGLMR 170

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR   +V+ +A +L+  G  EI L G +     G G D +  + + LL  L ++ GL R+
Sbjct: 171 SRDPKEVIKQAEQLVQAGYKEIVLTGIHTG---GYGEDLKDYSLARLLEDLEQVNGLKRI 227

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R ++     ++D +I+       ++ +LH+P+QSGSD +LK M R++T   + + ++R+R
Sbjct: 228 RISSIEASQLTDEVIEVIDRSTKVVRHLHIPLQSGSDTVLKRMRRKYTMAFFAERLERLR 287

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              P +A++SD IVGFPGET+ +F+ T D + K  +++   F YS R GTP + M +QV+
Sbjct: 288 EALPGLAVTSDVIVGFPGETEAEFQETYDFIAKHKFSELHVFPYSKRTGTPAARMEDQVN 347

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK---GKLVGRSPWLQSVVL 440
           E+VK ER+  L +   +    +     G+++E++ E+  KE+   G  VG +     V +
Sbjct: 348 EDVKNERVHRLIQLSDQLAKEYASQFEGEVLEMIPEERDKEEPNSGLYVGYTDNYLKVKI 407

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
            + +  IG ++KV+IT        GE V
Sbjct: 408 PATDEMIGKLVKVKITKAGYPYNEGEFV 435


>gi|329924074|ref|ZP_08279337.1| tRNA methylthiotransferase YqeV [Paenibacillus sp. HGF5]
 gi|328940913|gb|EGG37221.1| tRNA methylthiotransferase YqeV [Paenibacillus sp. HGF5]
          Length = 447

 Score =  411 bits (1056), Expect = e-112,   Method: Composition-based stats.
 Identities = 138/447 (30%), Positives = 235/447 (52%), Gaps = 20/447 (4%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
               + GC++N YD+  +   F ++GY++V+    AD+ ++NTCH+     +K    + R
Sbjct: 4   VAFYTLGCKVNFYDTEAIWQYFKNEGYDQVDFEQTADVYLINTCHVTNTGDKKSRQMIRR 63

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
                   ++   + +V V GC AQ    EIL   P V++V+G Q   ++ + +      
Sbjct: 64  A-------VRRNPEAIVAVTGCYAQTSPAEILD-IPGVDLVIGNQDREKIMDFIHDIEKT 115

Query: 147 KRVVDTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
           ++ ++   ++     FE + + D          AFL IQ+GC+ FCTFC++P++RG+  S
Sbjct: 116 RQPINAVRNIMKTRVFEEMDVPD----FAERTRAFLKIQDGCNNFCTFCIIPWSRGLSRS 171

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R    ++ +A +L+  G  EI L G +     G G D E    SDLL+ L  + GL R+R
Sbjct: 172 RDPKSIIKQAHQLVGAGYKEIVLTGIHTG---GYGDDLEDYRLSDLLWDLDRVDGLERIR 228

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
            ++     + + ++        +  +LH+P+Q+G D +LK M R++T  E+   +  IR 
Sbjct: 229 ISSIEASQIDEKMLDVLNRSSKMCRHLHIPLQAGDDTVLKRMRRKYTTEEFYNKMGLIRQ 288

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             PD+ I++D IVGFPGET++ FR   DL+  I +++   F YS R GTP + M +QVDE
Sbjct: 289 AMPDVGITTDVIVGFPGETEEMFRNGYDLMKAIQFSEMHVFPYSKRTGTPAARMEDQVDE 348

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK---EKGKLVGRSPWLQSVVLN 441
            VK  R+  L     + Q+++ +  VGQI+ V+ E+  K   + GK+ G S     +V N
Sbjct: 349 EVKNARVHDLIDLSEQLQLAYAERFVGQILNVIPEREYKGAPKGGKMQGYSDNYLQLVFN 408

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                 G + +V++T   ++   GEL+
Sbjct: 409 GSPDLEGKLCRVKVTKAGVNECEGELL 435


>gi|224094881|ref|XP_002310277.1| predicted protein [Populus trichocarpa]
 gi|222853180|gb|EEE90727.1| predicted protein [Populus trichocarpa]
          Length = 623

 Score =  411 bits (1056), Expect = e-112,   Method: Composition-based stats.
 Identities = 165/507 (32%), Positives = 258/507 (50%), Gaps = 52/507 (10%)

Query: 12  HMVSQIVDQCIVPQ-RFFVKSYGCQMNVYDSLRMEDMFFSQGY-ERVNSMDDADLIVLNT 69
             +    D  I+P+ R + ++YGCQMNV D   +  +  + GY E V+  + A++I +NT
Sbjct: 100 PAIEVPPDIEILPRGRIYHETYGCQMNVNDMEIVLSIMKNAGYSEIVDVPESAEIIFINT 159

Query: 70  CHIREKAAEKVYSFLGRIRNLKNSRI--------KEGGDLLVVVAGCVAQAEGEEILRRS 121
           C IR+ A +KV+  L     LK            +      VVV GC+A+   ++IL   
Sbjct: 160 CAIRDNAEQKVWQRLNYFWFLKRHWKSNVAIGRSQSHHPPKVVVLGCMAERLKDKILDAD 219

Query: 122 PIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLT 181
            +V+VV GP  Y  LP LLE   +G++ ++T  S+E+ +  +S V      K  + AF++
Sbjct: 220 KMVDVVCGPDAYRDLPRLLEEVEYGQKGINTLLSLEETYADISPVRIS---KNSINAFVS 276

Query: 182 IQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR----- 236
           +  GC+  C+FC+VP+TRG E SR +  +V E  +L   GV E+TLLGQNVN++      
Sbjct: 277 VMRGCNNMCSFCIVPFTRGRERSRPVESIVKEVAELWKEGVKEVTLLGQNVNSYNDASEI 336

Query: 237 ---------GKGLDGEKCT---------FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLI 278
                     K  DG   T         FSDLL  LS     +R RYT+ HP+D  D L+
Sbjct: 337 EKEVEPGTNWKYSDGFSSTCKVKRVGLRFSDLLDRLSTEFPEMRFRYTSPHPKDFPDDLL 396

Query: 279 KAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVG 338
               +   +   +HLP Q+GS  +L+ M R +T   Y  ++ +IR + PD+ I+SDFI G
Sbjct: 397 YVMRNRHNICKSIHLPAQTGSSTVLERMRRGYTREAYLDLVQKIRRIIPDVGITSDFICG 456

Query: 339 FPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN-MLEQVDENVKAERLLCLQKK 397
           F GET+++ + T+ LV  +GY  A+ F YS R  T      ++ V + VK  RL  L + 
Sbjct: 457 FCGETEEEHQDTLSLVKAVGYDMAYMFAYSMREKTHAHRNYVDDVPDEVKKRRLAELIEA 516

Query: 398 LREQQVSFNDACVGQIIEVLIEKHGKE--KGKLVGRSPWLQSVVLN-------------S 442
            RE      D+ +G +  VL+E   K     +L+G+S     V+               +
Sbjct: 517 FRESTGQCFDSQIGSVQLVLVEGPNKRAPDTELIGKSDRGHRVLFTNLPLPNRNEDGSQA 576

Query: 443 KNHNIGDIIKVRITDVKISTLYGELVV 469
           +N  +GD ++V I     ++L+G+ + 
Sbjct: 577 RNPMVGDYVEVLILKSTRASLFGDALA 603


>gi|298529986|ref|ZP_07017388.1| RNA modification enzyme, MiaB family [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298509360|gb|EFI33264.1| RNA modification enzyme, MiaB family [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 443

 Score =  410 bits (1055), Expect = e-112,   Method: Composition-based stats.
 Identities = 172/449 (38%), Positives = 266/449 (59%), Gaps = 15/449 (3%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           +++ ++GCQMNV DSL ++    + G +  +  ++AD+ ++NTC +REK  +K+YS LGR
Sbjct: 3   YYIFTFGCQMNVSDSLWLDQALQALGLKPCSREEEADIFLINTCSVREKPEQKIYSLLGR 62

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           +        +E   +   V GCVAQ  G   L R   V +V G      +PE ++R    
Sbjct: 63  L----YEYTREKPHVFAGVGGCVAQQVGRRFLERFSFVRLVFGTDGLVMVPEAIKRLLKD 118

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           + +     S+ D  +      G    K  V AF+ I +GCD FC +C+VPYTRG + SRS
Sbjct: 119 RHLKT---SLLDFQDHYPERKGYQPEKAPVQAFVNIMQGCDNFCAYCIVPYTRGRQKSRS 175

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
             +++ E   L+  G  EITLLGQNVN++ G+  +G    FS+LL S++ + GL RLR+T
Sbjct: 176 SREILQECAGLVARGCREITLLGQNVNSF-GQDKEGRDIPFSELLRSVAALPGLERLRFT 234

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
           TSHP+D+ + +I+A G+L  L P+LHLP+QSGSD++L SM R++ + +Y +I++++RS  
Sbjct: 235 TSHPKDIDEEVIQAFGELPALCPHLHLPLQSGSDQVLSSMGRKYNSDDYLRIVEKLRSSC 294

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           PDI++++D IVGFPGETD DF  TMD+V K+G+  +FSFKYS R G   ++M  ++D+  
Sbjct: 295 PDISLTTDLIVGFPGETDADFEDTMDIVKKVGFDSSFSFKYSDRPGVRAADMQPKIDDET 354

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-----KLVGRSPWLQSVVL- 440
           K ERL  LQ+   E         VG+   VL+E   K++G        GR P  + V + 
Sbjct: 355 KTERLARLQQLQSELTRDRLAGRVGRQELVLVEGRSKKQGPPDTVSWTGRDPGGRLVHVH 414

Query: 441 -NSKNHNIGDIIKVRITDVKISTLYGELV 468
              +    G++++V I      +L GE++
Sbjct: 415 LPVERDCTGEVLRVTIVRAHKHSLSGEVI 443


>gi|311747597|ref|ZP_07721382.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Algoriphagus sp. PR1]
 gi|126575579|gb|EAZ79889.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Algoriphagus sp. PR1]
          Length = 492

 Score =  410 bits (1055), Expect = e-112,   Method: Composition-based stats.
 Identities = 155/470 (32%), Positives = 255/470 (54%), Gaps = 23/470 (4%)

Query: 15  SQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIRE 74
           + + +     ++ +++SYGCQMN  DS  +  +    G++  +  + AD+I LNTC IRE
Sbjct: 23  TTVDENTGKSRKLYIESYGCQMNFSDSEIVASIMKENGFDTTSDFNQADVIFLNTCSIRE 82

Query: 75  KAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYY 134
           KA   V   L      K    +   ++ + V GC+A+   +++L    IV+VVVGP  Y 
Sbjct: 83  KAELTVRKRLTDFNKAK----RNKPEMTIGVLGCMAERLKDKLLEEEKIVDVVVGPDAYR 138

Query: 135 RLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCV 194
            LP L+  A  G + V+T  S E+ +  ++ V        GVTAF++I  GCD  C+FCV
Sbjct: 139 DLPNLVSSAEDGNKGVNTFLSREETYADIAPVRLN---SNGVTAFISIMRGCDNMCSFCV 195

Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT-------- 246
           VP+TRG E SR    +V EA+ L   G  E+TLLGQNV++++    +  K          
Sbjct: 196 VPFTRGRERSRDPHSIVAEAQDLYAKGYKEVTLLGQNVDSYKWSPEENNKARLNKKEEAV 255

Query: 247 -----FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
                F++LL  ++++   +R+R++TSHP+D++D ++      D +  Y+HLPVQSG+ R
Sbjct: 256 SSVINFANLLEMVAQVSPTLRVRFSTSHPKDITDEVLYTMKKYDNICKYIHLPVQSGNSR 315

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPD-IAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
           +L  MNR +    Y   ++ IR++  D   ISSD I GF  ET+++ + T+ L+D + Y 
Sbjct: 316 VLDLMNRTYDREWYLNRVESIRNILGDECGISSDMIAGFCSETEEEHQDTLTLMDIVKYD 375

Query: 361 QAFSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419
            ++ F YS R GT  +    + +   VK  RL  +  K  +     N   +G+   +LIE
Sbjct: 376 FSYMFFYSERPGTLAAKKYEDDIPLEVKKRRLAEIISKQSKLSHERNKLDIGKEQVILIE 435

Query: 420 KHGKEKGK-LVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
              K+  +   GR+   + V++ S ++ IGD + V+I D   +TL+G+++
Sbjct: 436 GISKKSDQEYRGRNSANKVVIIPSGDYGIGDYVLVKIKDCTPATLFGDIL 485


>gi|149194207|ref|ZP_01871305.1| tRNA-i(6)A37 modification enzyme MiaB [Caminibacter mediatlanticus
           TB-2]
 gi|149136160|gb|EDM24638.1| tRNA-i(6)A37 modification enzyme MiaB [Caminibacter mediatlanticus
           TB-2]
          Length = 422

 Score =  410 bits (1055), Expect = e-112,   Method: Composition-based stats.
 Identities = 159/445 (35%), Positives = 250/445 (56%), Gaps = 25/445 (5%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ +++++GCQMNV DS  +     S  Y    +  +ADLI+LNTC +REK  +K++S L
Sbjct: 2   KKLYIETFGCQMNVKDSEHIIAEL-SDFYGTTQNPKEADLIILNTCSVREKPVQKLFSEL 60

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           G ++       K   +    V GC A   GEEI++++P V+ V+G +   R+ E++ +  
Sbjct: 61  GALK-------KINPNAKFGVCGCTASHMGEEIIKKAPYVSFVLGARNVSRIKEVINK-- 111

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
             ++ V TD   +D             RK     F+ I  GCDK CTFC+VP TRG EIS
Sbjct: 112 --EKAVITDIDYDDTTYVFKNT-----RKNPYKDFVNIMVGCDKKCTFCIVPKTRGKEIS 164

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG-LDGEKCTFSDLLYSLSEIKGLVRL 263
             +  ++ +   L  +GV EITLLGQNVN +  +  +   K  F+DLL  +S+I G+ R+
Sbjct: 165 IPMDLILKQVENLAKDGVKEITLLGQNVNNYGKRFSVPHSKVDFTDLLREVSKIDGVERI 224

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+T+ HP    D  +    +   +  ++H P+QSGS +IL+SM R +    +    + IR
Sbjct: 225 RFTSPHPLHADDKFLDEFANNPKICKHIHFPLQSGSSKILQSMKRGYDKEWFLNRCEIIR 284

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              PD+AIS+D IVGFPGE+++DF+ T+D+V+K+ + Q FSF YSPR  T  +N   QVD
Sbjct: 285 Q-IPDVAISTDIIVGFPGESEEDFKDTLDVVEKVKFEQIFSFVYSPRPLTEAANYPNQVD 343

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
           + V  +RL  LQ+   E     +   +G+I +VL+E+ G      +G+S    +V L+  
Sbjct: 344 KEVAKKRLWKLQELHAEILEEVSKKQIGKIYKVLVEEEG------MGKSDNFFTVKLDKD 397

Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468
              +G I+ V+I      TL G+++
Sbjct: 398 PTLLGKIVDVKIHKANKHTLKGQVI 422


>gi|242373881|ref|ZP_04819455.1| 2-methylthioadenine synthase [Staphylococcus epidermidis M23864:W1]
 gi|242348435|gb|EES40037.1| 2-methylthioadenine synthase [Staphylococcus epidermidis M23864:W1]
          Length = 451

 Score =  410 bits (1055), Expect = e-112,   Method: Composition-based stats.
 Identities = 136/436 (31%), Positives = 236/436 (54%), Gaps = 17/436 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
                + GC++N Y++  +  +F    Y+RV+   +AD+ V+NTC +     +K    + 
Sbjct: 6   TVAFHTLGCKVNHYETEAIWQLFKEADYDRVDFETNADVFVINTCTVTNTGDKKSRQIIR 65

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R        I++  + +V V GC AQ    EI+   P V+VVVG Q  ++L + +++ + 
Sbjct: 66  RA-------IRQNPEAVVCVTGCYAQTSSAEIM-EIPGVDVVVGTQDRHKLLDYIDQFQQ 117

Query: 146 GKRVVDT--DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            ++ ++   +      +E L +            A L IQEGC+ FCTFC++P+ RG+  
Sbjct: 118 ERQPINGVGNIMKNRTYEELEVP----YFTDRTRASLKIQEGCNNFCTFCIIPWARGLMR 173

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR   +VV++A +L+++G  EI L G +     G G D +    + LL  L EI GL R+
Sbjct: 174 SRDPEKVVEQASQLVNSGYKEIVLTGIHTG---GYGQDLKNYNLAQLLRDLDEIDGLERI 230

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R ++     ++D +I+  G+ + ++ +LH+P+QSGSD +LK M R++T   + + +  + 
Sbjct: 231 RISSIEASQLTDEVIEVIGNSNKVVRHLHVPLQSGSDSVLKRMRRKYTMEHFSERLTELH 290

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              PD+A++SD IVGFPGET+++F+ T D + K  +++   F YSPR+GTP + M +Q+D
Sbjct: 291 KALPDLAVTSDVIVGFPGETEEEFQETYDFIVKHQFSELHVFPYSPRIGTPAARMDDQID 350

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
           E +K ER+  L     +    +      +++EV+ E+ G++   LVG +     V     
Sbjct: 351 EGIKNERVHKLITLSNQLAKEYASKFENEVLEVIPEEQGEKPNTLVGYADNYMKVQFEGD 410

Query: 444 NHNIGDIIKVRITDVK 459
              IG I+KV+I    
Sbjct: 411 ESLIGQIVKVKILKAD 426


>gi|261405595|ref|YP_003241836.1| RNA modification enzyme, MiaB family [Paenibacillus sp. Y412MC10]
 gi|261282058|gb|ACX64029.1| RNA modification enzyme, MiaB family [Paenibacillus sp. Y412MC10]
          Length = 447

 Score =  410 bits (1055), Expect = e-112,   Method: Composition-based stats.
 Identities = 139/447 (31%), Positives = 235/447 (52%), Gaps = 20/447 (4%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
               + GC++N YD+  +   F ++GY++V+    AD+ ++NTCH+     +K    + R
Sbjct: 4   VAFYTLGCKVNFYDTEAIWQYFKNEGYDQVDFEQTADVYLINTCHVTNTGDKKSRQMIRR 63

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
                   ++   + +V V GC AQ    EIL   P V++V+G Q   ++ + +      
Sbjct: 64  A-------VRRNPEAIVAVTGCYAQTSPAEILD-IPGVDLVIGNQDREKIMDFIHDIEKT 115

Query: 147 KRVVDTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
           ++ ++   ++     FE + + D          AFL IQ+GC+ FCTFC++P++RG+  S
Sbjct: 116 RQPINAVRNIMKTRVFEEMDVPD----FAERTRAFLKIQDGCNNFCTFCIIPWSRGLSRS 171

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R    ++ +A +L+  G  EI L G +     G G D E    SDLL+ L  + GL R+R
Sbjct: 172 RDPKSIIKQAHQLVGAGYKEIVLTGIHTG---GYGDDLEDYRLSDLLWDLDRVDGLERIR 228

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
            ++     + + ++        +  +LH+P+Q+G D +LK M R++T  E+   +  IR 
Sbjct: 229 ISSIEASQIDEKMLDVLNRSSKMCRHLHIPLQAGDDTVLKRMRRKYTTEEFYNKMGLIRQ 288

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             PD+ I++D IVGFPGETD+ FR   DL+  I +++   F YS R GTP + M +QVDE
Sbjct: 289 AMPDVGITTDVIVGFPGETDEMFRNGYDLMKAIQFSEMHVFPYSKRTGTPAARMEDQVDE 348

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK---EKGKLVGRSPWLQSVVLN 441
            VK  R+  L     + Q+++ +  VGQI+ V+ E+  K   + GK+ G S     +V N
Sbjct: 349 EVKNARVHDLIDLSEQLQLAYAERFVGQILNVIPEREYKGAPKGGKMQGYSDNYLQLVFN 408

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                 G + +V++T   ++   GEL+
Sbjct: 409 GSPDLEGKLCRVKVTKAGVNECEGELL 435


>gi|227488710|ref|ZP_03919026.1| tRNA 2-methylthioadenosine synthase [Corynebacterium
           glucuronolyticum ATCC 51867]
 gi|227542291|ref|ZP_03972340.1| tRNA 2-methylthioadenosine synthase [Corynebacterium
           glucuronolyticum ATCC 51866]
 gi|227091371|gb|EEI26683.1| tRNA 2-methylthioadenosine synthase [Corynebacterium
           glucuronolyticum ATCC 51867]
 gi|227181891|gb|EEI62863.1| tRNA 2-methylthioadenosine synthase [Corynebacterium
           glucuronolyticum ATCC 51866]
          Length = 483

 Score =  410 bits (1055), Expect = e-112,   Method: Composition-based stats.
 Identities = 164/451 (36%), Positives = 250/451 (55%), Gaps = 28/451 (6%)

Query: 36  MNVYDSLRMEDMFFSQGYERVNSMDD---------ADLIVLNTCHIREKAAEKVYSFLGR 86
           MNV+DS R+  +  S GY      D           DLIV NTC +RE AA+++Y  LG+
Sbjct: 1   MNVHDSERLSGLLESAGYVAYEGEDPLVAGDHTVVPDLIVFNTCAVRENAAQRLYGTLGQ 60

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           +  +K     +   + + V GC AQ +G++I+ ++P V+VV G      LP LL+RA   
Sbjct: 61  LLGVKE----DHPTMQIAVGGCQAQNDGKKIIEKAPWVDVVFGTHNLGSLPALLDRASHN 116

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           KR    +  ++D  E    V     R+   + +++I  GC+  CTFC+VP+ RG E+ R 
Sbjct: 117 KRA---EVEIKDALEDFPSV-LPAKRESAYSGWVSISVGCNNTCTFCIVPHLRGKELDRR 172

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG----EKCTFSDLLYSLSEIKGLVR 262
              ++ E R L++ GV E+TLLGQNVNA+     D     ++  FS LL +  EI GL R
Sbjct: 173 PGDILAEVRALVEQGVEEVTLLGQNVNAYGVNFADPSVERDRSAFSKLLRACGEIDGLER 232

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LR+T+ HP + +  +I A  D   + P LH+P+QSGSD++LK M R +   ++  I+D +
Sbjct: 233 LRFTSPHPAEFTSDVIDAMVDTPNICPQLHMPLQSGSDQVLKRMRRSYRTKKFLSILDEV 292

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R   P  AI++D IVGFPGET++DF+ T+D+V++  +  AF+F+YSPR GTP ++  +QV
Sbjct: 293 REKIPHAAITTDIIVGFPGETEEDFQKTLDVVERARFTSAFTFQYSPRPGTPAASYEDQV 352

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKH----GKEKGKLVGRSPWLQSV 438
            + V  ER   LQ          N   VGQ +E+L+++H    G E  +L GR+   + V
Sbjct: 353 PKEVVQERFERLQALQERICAEENACFVGQEVELLVQEHQSKKGTENHRLSGRARDGRLV 412

Query: 439 VL---NSKNHNIGDIIKVRITDVKISTLYGE 466
                  +    GD + V +T+ K   L  +
Sbjct: 413 HFAPSTGEGIRPGDFVIVTVTESKPHYLIAD 443


>gi|229543808|ref|ZP_04432867.1| RNA modification enzyme, MiaB family [Bacillus coagulans 36D1]
 gi|229324947|gb|EEN90623.1| RNA modification enzyme, MiaB family [Bacillus coagulans 36D1]
          Length = 450

 Score =  410 bits (1055), Expect = e-112,   Method: Composition-based stats.
 Identities = 135/449 (30%), Positives = 234/449 (52%), Gaps = 21/449 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
                + GC++N Y++  M  +F   GYER +   +AD+ V+NTC +     +K    + 
Sbjct: 3   TVAFHTLGCKVNHYETEAMWQLFKKAGYERTDFETNADVYVINTCTVTNTGDKKSRQVIR 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R        +++  D +V V GC AQ    EIL   P V+VVVG Q   ++   +E+   
Sbjct: 63  RA-------VRQNPDAVVCVTGCYAQTSPGEIL-EIPGVDVVVGTQDRTKMLGYIEQYLK 114

Query: 146 GKRVVDTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            ++ V+   ++     +E + +            A L IQEGC+ FCTFC++P+ RG+  
Sbjct: 115 ERKPVNAVKNIMKNRVYEEMEVP----YFTDRHRASLKIQEGCNNFCTFCIIPWARGLMR 170

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE-IKGLVR 262
           SR   +V+ +A+KL++ G  E+ L G +     G G D +    + LL  L E ++GL R
Sbjct: 171 SRDPEKVIAQAQKLVNAGYKELVLTGIHTG---GYGQDLKDYNLAMLLKDLEEKVQGLKR 227

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R ++     ++D +I       V++ ++H+P+QSGSD +LK M R++T  ++ + I ++
Sbjct: 228 VRISSIEASQLTDEVIDVIKHSKVVVRHMHVPIQSGSDTVLKRMRRKYTMDQFAERITKL 287

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           +   P +A++SD IVGFPGET+++F  T + + +  +A+   F YSPR GTP + M +Q+
Sbjct: 288 KEALPGLALTSDVIVGFPGETEEEFMETYNFIKEHRFAELHVFPYSPRTGTPAARMKDQI 347

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK---GKLVGRSPWLQSVV 439
           DE +K ER+  +     +    +      +++EV+ E+  KE    G   G +     VV
Sbjct: 348 DEEIKNERVHRMIALSDQLAKEYASQFENEVLEVIPEEPFKEDPESGLYEGYTDNYLKVV 407

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
             +    +G ++KV+IT         + V
Sbjct: 408 FPATPDMVGKLVKVKITKAGYPYNEAQFV 436


>gi|78188191|ref|YP_378529.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Chlorobium
           chlorochromatii CaD3]
 gi|123770899|sp|Q3AU39|MIAB_CHLCH RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|78170390|gb|ABB27486.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Chlorobium
           chlorochromatii CaD3]
          Length = 449

 Score =  410 bits (1055), Expect = e-112,   Method: Composition-based stats.
 Identities = 161/451 (35%), Positives = 257/451 (56%), Gaps = 16/451 (3%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P  F++ ++GCQMN  DS  M  +  ++GY   ++  DA +++LNTC +RE A E+V   
Sbjct: 6   PDAFYIHTFGCQMNQADSGIMTAILQNEGYVAASNEADAGIVLLNTCAVREHATERVGHL 65

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           L  +   K    +  G LLV V GC+ Q E E + +  P+V+ + GP TY  LP L+++ 
Sbjct: 66  LQHLHGRKK---RSKGRLLVGVTGCIPQYEREVLFKNYPVVDFLAGPDTYRSLPLLIKQV 122

Query: 144 R---FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           +    G       ++  + ++ +  V     R   ++AF+ +  GC+  C +CVVP TRG
Sbjct: 123 QQAGKGATEAALAFNSAETYDGIEPV-----RSSSMSAFVPVMRGCNNHCAYCVVPLTRG 177

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E S   + V++E R+L + G  EITLLGQNVN++        +C F++LL ++S     
Sbjct: 178 RERSHPKAAVLNEVRQLAEAGYREITLLGQNVNSYYD---PLAQCNFAELLAAVSCAAPA 234

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+TTSHP+D+S+ L++   +   +  ++HLPVQSGS RIL+ M R HT  EY + I 
Sbjct: 235 TRIRFTTSHPKDISEALVRTIAEHSNICNHIHLPVQSGSSRILRLMQRGHTIEEYLEKIA 294

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NML 379
            IRS+ P++ +S+D I GF GET+ D +AT+ L++++ +  AF F YSPR  TP +  + 
Sbjct: 295 LIRSLIPNVTLSTDMIAGFCGETEADHQATLRLLEEVQFDSAFMFYYSPRPRTPAAEKLT 354

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLVGRSPWLQSV 438
           + V E +K  RL  + +       S     VG ++EVL E   +    +L+GR+   ++V
Sbjct: 355 DDVPEALKKARLQEIIECQNRISASLFSQAVGSVVEVLAEAESRRSSEQLMGRTAGNRTV 414

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
           V     +  GD++ VRIT    +TL GE ++
Sbjct: 415 VFARNGYQAGDVLHVRITGSTSATLLGEPLI 445


>gi|167630431|ref|YP_001680930.1| miab-like tRNA modifying enzyme [Heliobacterium modesticaldum Ice1]
 gi|238066299|sp|B0TIH8|RIMO_HELMI RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|167593171|gb|ABZ84919.1| miab-like tRNA modifying enzyme [Heliobacterium modesticaldum Ice1]
          Length = 460

 Score =  410 bits (1055), Expect = e-112,   Method: Composition-based stats.
 Identities = 131/458 (28%), Positives = 210/458 (45%), Gaps = 22/458 (4%)

Query: 19  DQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAE 78
            + I+  +  + S GC  N  D+  M  +    GYE     +DA ++++NTC     A E
Sbjct: 12  TEAILTMKIHITSLGCAKNRVDTEVMMGLLREAGYELTQREEDAHVLLVNTCGFILPAKE 71

Query: 79  KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPE 138
           +    +  +   K      G    ++VAGC+ Q    E+    P V+   GP    R+  
Sbjct: 72  ESIQTILELARYKE----TGRCRALLVAGCLPQGYAGELAAELPEVDAFFGPGDVPRVTS 127

Query: 139 LLERARFGKRVVDT---DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
           ++     GKR ++    D+  +    R+      Y       A++ I +GCD  C +C +
Sbjct: 128 IVAEVLRGKRSLEVGKPDFLYDHTMPRVLSTPFHY-------AYVKIADGCDNRCGYCAI 180

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
           P  RG   SRS   +V+E R L+D G+ E  L+ Q+     G    GE    + L+  L+
Sbjct: 181 PNLRGRFRSRSEESIVEETRSLVDRGIQEALLIAQDTT-CYGVDRYGE-FRLAQLIGKLA 238

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
            I GL  +R    +P   +  LI+A      +  Y+ LP+Q   D +L+SMNR     E 
Sbjct: 239 SIDGLRWIRLMYCYPSHFTPELIEAMAAEPKVCRYVDLPLQHADDELLRSMNRHAGVDEI 298

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
           R++I  +R   P +AI + FIVG PGET++ F+  +D + ++ + +   F YS    TP 
Sbjct: 299 RRLIRTLRERLPGLAIRTSFIVGLPGETEEKFQRLLDFLAEMRFDRVGIFTYSREENTPA 358

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS--- 432
             + +QV E VK ER        +E  +S     +G+ +EVL+E+     G   GRS   
Sbjct: 359 GKLADQVPEEVKEERYHRAMVLQQEISLSIQQEWIGKTLEVLVEEEVA-PGLYRGRSERE 417

Query: 433 -PWLQS-VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            P +   +    ++  IG+   VRIT      L GE +
Sbjct: 418 APEVDGHIEFKGRHRMIGEWANVRITAASHYDLMGEAI 455


>gi|148240091|ref|YP_001225478.1| 2-methylthioadenine synthetase [Synechococcus sp. WH 7803]
 gi|229891030|sp|A5GML6|MIAB_SYNPW RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|147848630|emb|CAK24181.1| 2-methylthioadenine synthetase [Synechococcus sp. WH 7803]
          Length = 454

 Score =  410 bits (1054), Expect = e-112,   Method: Composition-based stats.
 Identities = 172/454 (37%), Positives = 261/454 (57%), Gaps = 23/454 (5%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           +++ ++GCQMN  DS RM  +  S GY   ++  DADL++ NTC IR+ A +KVYS+LGR
Sbjct: 10  YWITTFGCQMNKADSERMAGILESMGYREASAELDADLVLYNTCTIRDNAEQKVYSYLGR 69

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
               K    +   +L +VVAGCVAQ EGE +LRR P +++V+GPQ   RL  LL++   G
Sbjct: 70  QAQRK----RTNPNLTLVVAGCVAQQEGESLLRRVPELDLVMGPQHANRLETLLQQVDSG 125

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           ++VV T+       E ++       R   +  ++ +  GC++ CT+CVVP  RG E SR 
Sbjct: 126 QQVVATEE--HHILEDITTAR----RDSSICGWVNVIYGCNERCTYCVVPSVRGKEQSRL 179

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG------EKCTFSDLLYSLSEIKGL 260
              +  E   L   G  EITLLGQN++A  G+ L G       + T +DLL+ + +++GL
Sbjct: 180 PDAIKLEMEGLAAQGFKEITLLGQNIDA-YGRDLPGITPEGRRQHTLTDLLHHVHDVEGL 238

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+ TSHPR  +D LI A  DL  L  + H+P QSG + +L++M R +T   YR+IID
Sbjct: 239 ERIRFATSHPRYFTDRLIDACADLPKLCEHFHIPFQSGDNDVLRAMARGYTVERYRRIID 298

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           RIR   PD ++S+D IV FPGETD  +R T+ L+++IG+ Q  +  YSPR  TP ++   
Sbjct: 299 RIRERMPDASLSADVIVAFPGETDAQYRRTLALIEEIGFDQVNTAAYSPRPNTPAADWDN 358

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVV 439
           Q+ E++K ERL  +   +       N    G++ EVL E    K+  +L+GR+   +   
Sbjct: 359 QLPEDIKVERLREINALVERCARERNGRYAGRVEEVLAEGINPKDPSQLMGRTRTNRLTF 418

Query: 440 L-----NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 + + +  GD++ V I  V+  +L G  +
Sbjct: 419 FSATGADDRRYQAGDLVNVHIDAVRSFSLSGTPL 452


>gi|291550943|emb|CBL27205.1| SSU ribosomal protein S12P methylthiotransferase [Ruminococcus
           torques L2-14]
          Length = 440

 Score =  410 bits (1054), Expect = e-112,   Method: Composition-based stats.
 Identities = 138/449 (30%), Positives = 222/449 (49%), Gaps = 16/449 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC  N+ D+  M  M  S+GYE  N   +AD+IV+NTC     A E+    + 
Sbjct: 2   KILFISLGCDKNLVDTEVMLGMLASRGYEMTNDEQEADIIVINTCCFIHDAKEESIQNIL 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +   K    K G    ++V GC+A+   +EIL   P V+ V+G   Y R+ + ++ A  
Sbjct: 62  EMAEYK----KNGSAKALIVTGCMAERYRQEILDEIPEVDEVLGTTAYDRILDAVDAALA 117

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G+  V       D                G  A+L I EGCDK CT+C++P  RG   S 
Sbjct: 118 GQHEV----MTADLDALPLPETKRLVTTGGHFAYLKIAEGCDKHCTYCIIPKIRGNFRSV 173

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            + +++ EA+ L + GV E+ L+ Q      GK L GEK +   LL  L +I G+  +R 
Sbjct: 174 PMERLLKEAQDLAEQGVKELILVAQETT-LYGKDLYGEK-SLPKLLRELCKISGIRWIRI 231

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
              +P +++D LI+   +   +  YL LP+Q  +D ILK M RR +  E   I+ ++R  
Sbjct: 232 LYCYPEEITDELIQVMKEESKICHYLDLPIQHANDTILKRMGRRTSKQELIDIVQKLRKE 291

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            PDI + +  I GFPGET +     M+ +D + + +  +F YSP   TP +   +Q+DE 
Sbjct: 292 IPDICLRTTLITGFPGETQEQHEEVMEFIDTLEFDRLGAFTYSPEEDTPAATFEDQIDEE 351

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVLN 441
           VK +R   + +  +E      +  +G+ + V+IE    ++   VGR+    P +  ++  
Sbjct: 352 VKEDRQADIMELQQEIAFDKAEDMIGREVLVMIEGKVADENAYVGRTYRDAPNVDGLIFI 411

Query: 442 SKNHNI--GDIIKVRITDVKISTLYGELV 468
           + +  +  GD  KV++T      L GEL+
Sbjct: 412 NTDVELISGDFAKVKVTGALDYDLIGELI 440


>gi|254525438|ref|ZP_05137490.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Prochlorococcus marinus
           str. MIT 9202]
 gi|221536862|gb|EEE39315.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Prochlorococcus marinus
           str. MIT 9202]
          Length = 464

 Score =  410 bits (1054), Expect = e-112,   Method: Composition-based stats.
 Identities = 166/451 (36%), Positives = 258/451 (57%), Gaps = 23/451 (5%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           +++ ++GCQMN  DS RM       GY + +    ADL++ NTC IR+ A +KVYSFLGR
Sbjct: 21  YWITTFGCQMNKADSERMAGTLEKMGYTKADDELKADLVLYNTCTIRDNAEQKVYSFLGR 80

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
               K+        L +VVAGC+AQ EGE +LRR P +++V+GPQ    L  LL +   G
Sbjct: 81  QAKRKHKI----PSLKLVVAGCLAQQEGESLLRRVPELDLVMGPQHVNNLENLLGKVDSG 136

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
            +V  T    E+ F    I      R+  +  ++ I  GC++ C++CVVP  RG E SR 
Sbjct: 137 NQVAAT----EETFISEDIT--NARRESSICGWVNIIYGCNERCSYCVVPSVRGKEQSRY 190

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG------EKCTFSDLLYSLSEIKGL 260
            + +  E +KL ++   EITLLGQN++A  G+ L G      ++ T +DLLY + +++G+
Sbjct: 191 PNAIKSEIQKLANDNFKEITLLGQNIDA-YGRDLPGTTKEGRKENTLTDLLYYIHDVEGI 249

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+ TSHPR  S  LI+A  +LD +  + H+P QSG++ ILK M R +T  +Y++II+
Sbjct: 250 RRIRFATSHPRYFSKRLIQACYELDKVCEHFHIPFQSGNNEILKLMARGYTIDKYKRIIE 309

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
            IRS+ P+ +I++D IV FPGE+++ +R T+ L+  IG+ Q  +  YSPR  TP +    
Sbjct: 310 NIRSLMPNASITADAIVAFPGESEEQYRDTLKLISDIGFDQVMTAAYSPRPNTPAALWHN 369

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVV 439
           Q+ E VK ERL  + + +       N   +  I  VLIE    K   +++GR+   +   
Sbjct: 370 QISEEVKKERLKEINELVETTSKQRNARYLDSIESVLIEGFNPKNSSQIMGRTRTNRLTF 429

Query: 440 LNSKNH-----NIGDIIKVRITDVKISTLYG 465
           +    +     ++GD I V+I + +  +L G
Sbjct: 430 VEIPKNIKFNFSLGDEIDVKINEARPFSLTG 460


>gi|332662143|ref|YP_004444931.1| (dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Haliscomenobacter hydrossis DSM 1100]
 gi|332330957|gb|AEE48058.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Haliscomenobacter hydrossis DSM 1100]
          Length = 481

 Score =  410 bits (1054), Expect = e-112,   Method: Composition-based stats.
 Identities = 151/448 (33%), Positives = 246/448 (54%), Gaps = 11/448 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
             + F+++SYGCQMN  DS  +  +    G++   +++ ADLI++NTC IREKA E V  
Sbjct: 38  AGKHFYIESYGCQMNFSDSEIVASILAEVGFKPTRNLELADLILVNTCSIREKAEETVRK 97

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            L     +K    ++    LV V GC+A+    + L    +V++VVGP  Y  LP+L+  
Sbjct: 98  RLRIFDAIK----RQKPGTLVGVLGCMAERLKSKFLEEERLVDLVVGPDAYRDLPKLVAT 153

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           A  G + V+   S E+ +  +S +       +GV+AF++I  GCD  C+FCVVP+TRG E
Sbjct: 154 AEDGDKGVNVFLSREETYADISPLRLD---SKGVSAFISIMRGCDNMCSFCVVPFTRGRE 210

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK-CTFSDLLYSLSEIKGLV 261
            SR    ++ EA++L + G  E+TLLGQNV++++    + E    F+ LL  ++ +   +
Sbjct: 211 RSRDAFSILAEAQELYERGYREVTLLGQNVDSYKWTNPETETLVNFAHLLEMVALVAPDL 270

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R++TSHP+D+++ ++        +  Y+HLPVQSG+  +L+ MNR +    Y + I+ 
Sbjct: 271 RVRFSTSHPKDITNEVLHTIAKYPNICKYIHLPVQSGNSNVLERMNRTYDREWYMERIEA 330

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLE 380
           IR + PD AISSD I GF  ET+ + + T+ +++   Y+ ++ F YS R GT  +    +
Sbjct: 331 IRQIIPDCAISSDIIAGFCSETEAEHQDTLSMIEFADYSMSYMFFYSERPGTLAARKYPD 390

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVV 439
            +   VK  RL  +     +     N   VG++ EVLIE   ++  +   GR+   + +V
Sbjct: 391 DITLEVKKRRLQEIINLQSQVSYRHNQRDVGKVYEVLIEGDSRKSEQDFCGRNSQNKMIV 450

Query: 440 LNS-KNHNIGDIIKVRITDVKISTLYGE 466
                 +  G  I V I     +TL GE
Sbjct: 451 FPKVPGYQPGQYINVLIKAASSATLIGE 478


>gi|294501299|ref|YP_003564999.1| ribosomal protein S12 methylthiotransferase [Bacillus megaterium QM
           B1551]
 gi|294351236|gb|ADE71565.1| ribosomal protein S12 methylthiotransferase [Bacillus megaterium QM
           B1551]
          Length = 452

 Score =  410 bits (1054), Expect = e-112,   Method: Composition-based stats.
 Identities = 140/449 (31%), Positives = 243/449 (54%), Gaps = 21/449 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
                + GC++N Y++  +  +F  QGYERV     AD+ V+NTC +     +K    + 
Sbjct: 3   TVAFHTLGCKVNHYETEAIWQLFKGQGYERVEYEQTADVYVINTCTVTNTGDKKSRQVIR 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R        +++  D ++ V GC AQ    EI+   P V++VVG Q   ++ + +E+ + 
Sbjct: 63  RA-------VRKNPDAVICVTGCYAQTSPAEIMA-IPGVDIVVGTQDRVKMLDYIEQFKK 114

Query: 146 GKRVVDTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            ++ ++   ++     +E L +            A L IQEGC+ FCTFC++P+ RG+  
Sbjct: 115 ERQPINGVGNIMKTRVYEELDVP----AFTDRTRASLKIQEGCNNFCTFCIIPWARGLMR 170

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKGLVR 262
           SR   +VV +A++L+D G  EI L G +     G G D +    + LL  L S++KGL R
Sbjct: 171 SRDPKEVVAQAQQLVDAGYKEIVLTGIHTG---GYGEDMKDYNLAQLLRDLESQVKGLKR 227

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R ++     ++D +I+     ++++ +LH+P+QSGS+ +LK M R++T   + + ++R+
Sbjct: 228 IRISSIEASQITDEVIEVLDQSEMVVRHLHIPLQSGSNTVLKRMRRKYTMEFFGERLNRL 287

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           +   P +AI+SD IVGFPGET+++F  T + + + G+++   F YS R GTP + M +Q+
Sbjct: 288 KEALPGLAITSDVIVGFPGETEEEFMETYNFIKEHGFSELHVFPYSKRTGTPAARMTDQI 347

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK---GKLVGRSPWLQSVV 439
           DE VK ER+  L +   +    +     G+++EV+ E+  KE    G  VG +     VV
Sbjct: 348 DEEVKNERVHRLIELSNQLAKEYASTFEGEVLEVIPEEKYKEDPESGLYVGYTDNYLKVV 407

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
             +    +G ++KV+I+        GE V
Sbjct: 408 FKASEEMVGKLVKVKISKAGYPYNEGEFV 436


>gi|295094832|emb|CBK83923.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Coprococcus sp. ART55/1]
          Length = 483

 Score =  410 bits (1054), Expect = e-112,   Method: Composition-based stats.
 Identities = 165/443 (37%), Positives = 250/443 (56%), Gaps = 16/443 (3%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           ++++GCQMNV DS ++  +    GY R  S + AD I+ NTC +RE A  KVY  LG ++
Sbjct: 51  IQTFGCQMNVRDSEKLAGILEQMGYVRTES-EHADFIIYNTCTVRENANRKVYGHLGLMK 109

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPEL-LERARF 145
           +LK        ++ + + GC+ Q +     I +    V++V G    Y+L E+ + R   
Sbjct: 110 HLKEK----NPEMKIALCGCMMQEQHVVTTISKSYRFVDMVFGTHNVYKLAEIFVSRIES 165

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G  V+D     ++  E L  V     R+    + + I  GC+ FCT+C+VPY RG E SR
Sbjct: 166 GSMVIDIWKDAKEVVEDLPAV-----REFPFKSGVNIMFGCNNFCTYCIVPYVRGRERSR 220

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           +   ++ E  +L D+GV EI LLGQNVN+  GK L+    TF++LL  +  I+ + R+R+
Sbjct: 221 NPEDIIAECERLADDGVVEIMLLGQNVNS-YGKNLE-HPITFAELLRRVCAIEKIQRVRF 278

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
            TSHP+D+SD LI    +   +  +LHLPVQSGS +IL +MNRR+T   Y  ++DRIR+ 
Sbjct: 279 MTSHPKDLSDELIDVIAENQKICRHLHLPVQSGSTKILNAMNRRYTKESYLALVDRIRAK 338

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P+I++++D IVGFPGET++DF  TMD+V+K+ Y  AF+F YS R GTP + M     + 
Sbjct: 339 IPEISLTTDIIVGFPGETEEDFLETMDVVEKVQYDTAFTFIYSKRTGTPAAGMENGSTKE 398

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRSPWLQSVVLNSKN 444
              +R   L ++++E       A  GQ   VL+E   ++  G L GR      V      
Sbjct: 399 EIQDRYNRLLRRVQEISDVKTIAIKGQTQPVLVEGFDEKGDGLLTGRLSNNILVHFPGCA 458

Query: 445 HNIGDIIKVRITDVKISTLYGEL 467
             +G I+ V++ + K     GEL
Sbjct: 459 EMVGKILNVKLVECKGFYYMGEL 481


>gi|78779785|ref|YP_397897.1| 2-methylthioadenine synthetase [Prochlorococcus marinus str. MIT
           9312]
 gi|123741439|sp|Q319I4|MIAB_PROM9 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|78713284|gb|ABB50461.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Prochlorococcus marinus
           str. MIT 9312]
          Length = 463

 Score =  410 bits (1054), Expect = e-112,   Method: Composition-based stats.
 Identities = 173/455 (38%), Positives = 259/455 (56%), Gaps = 23/455 (5%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + +++ ++GCQMN  DS RM       GY R +   +ADL++ NTC IR+ A  KVYSFL
Sbjct: 19  RSYWITTFGCQMNKADSERMAGTLEKMGYTRADDELNADLVLYNTCTIRDNAEHKVYSFL 78

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR    K+        L +VVAGC+AQ EGE +LRR P +++V+GPQ    L  LL +  
Sbjct: 79  GRQAKRKHKI----PSLKLVVAGCLAQQEGESLLRRVPELDLVMGPQHVNNLENLLGKVD 134

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G +V  T    E+ F    I      R+  +  ++ I  GC++ C++CVVP  RG E S
Sbjct: 135 LGNQVAAT----EETFISEDIT--NARRESSICGWVNIIYGCNERCSYCVVPSVRGKEQS 188

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG------EKCTFSDLLYSLSEIK 258
           R  + +  E +KL D+   EITLLGQN++A  G+ L G      ++ T +DLLY + +I 
Sbjct: 189 RYPNAIKSEIQKLADDNFKEITLLGQNIDA-YGRDLPGTTKEGRKENTLTDLLYYIHDIN 247

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           G+ R+R+ TSHPR  S  LI+A  +LD +  + H+P QSG+D ILK M+R +   +Y+ I
Sbjct: 248 GISRIRFATSHPRYFSKRLIQACYELDKVCEHFHIPFQSGNDEILKQMSRGYNIKKYKNI 307

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           ID IRS+ PD +I++D IV FPGET+  ++ T+ L+  IG+ Q  +  YSPR  TP +  
Sbjct: 308 IDNIRSLMPDASITADAIVAFPGETEQQYQDTLKLISDIGFDQVNTAAYSPRPNTPAAVW 367

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQS 437
             Q+ E VK  RL  +   + +   + N   +  I  VLIE  + K   +++GR+   + 
Sbjct: 368 SNQLSEEVKKTRLQEINALVEKTARNRNQRYINNIESVLIEGLNPKNSSQIMGRTRTNRL 427

Query: 438 VVLNSKNH-----NIGDIIKVRITDVKISTLYGEL 467
             +    +     ++GD I VRI + +  +L GEL
Sbjct: 428 TFVKIPKNIQFNFSLGDEIDVRINEARPFSLTGEL 462


>gi|78186125|ref|YP_374168.1| hypothetical protein Plut_0237 [Chlorobium luteolum DSM 273]
 gi|123743738|sp|Q3B6A6|MIAB_PELLD RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|78166027|gb|ABB23125.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Chlorobium luteolum DSM
           273]
          Length = 446

 Score =  410 bits (1054), Expect = e-112,   Method: Composition-based stats.
 Identities = 167/443 (37%), Positives = 249/443 (56%), Gaps = 14/443 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +RF+++++GCQMN  DS  +  +    G+ R ++  DAD+++LNTC +RE A EK+   L
Sbjct: 5   RRFYIQTFGCQMNEADSGIIARVLLDAGFRRADTEQDADVVLLNTCAVRENAVEKIAHLL 64

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             ++  K    K    L V V GCV Q + EE+  R P ++ + GP +Y RLP L++ A 
Sbjct: 65  EHLKGAK----KRRKTLQVGVLGCVPQHQREEMFSRFPAIDFIAGPDSYRRLPSLIDDAA 120

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
              R    D+   + +  +  V     R+  ++AF+ +  GC+  C FCVVP+TRG E S
Sbjct: 121 SAVRSAMLDFDPSETYVGIRQV-----REGRISAFIPVMRGCNNMCAFCVVPFTRGRERS 175

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           + L+ V  EAR+L + G  EITLLGQNVN+       G   TFS LL +++     VR+R
Sbjct: 176 QPLAMVTGEARELAEAGYREITLLGQNVNS-YSDPASG--ATFSALLDAVALAAPDVRIR 232

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +TTSHP+D+S  LI        +  ++HLPVQSGSD +L+ MNR H   EY + I  IR 
Sbjct: 233 FTTSHPKDISVGLIDTIARRPNICRHVHLPVQSGSDSVLRRMNRGHGISEYLEKIRIIRD 292

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN-MLEQVD 383
             P + +S+D I GF GE ++D RAT+DL+  + +  AF F YS R GT  +  + + V 
Sbjct: 293 ALPGVTLSTDIIAGFCGEREEDHRATLDLLRTVRFDAAFMFHYSTREGTLAARTLPDDVA 352

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRSPWLQSVVLNS 442
           E  K  RL  +    +E     N   VG + EVL E   +   G+L+GR+   ++VV + 
Sbjct: 353 ETDKKRRLQEIIDLQQEISAENNRRQVGTVAEVLAESESRRSPGRLLGRTDGNRAVVFDR 412

Query: 443 KNHNIGDIIKVRITDVKISTLYG 465
                GD+++VR+T    +TL G
Sbjct: 413 GECMPGDLVRVRLTSSTSATLSG 435


>gi|212715618|ref|ZP_03323746.1| hypothetical protein BIFCAT_00517 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660985|gb|EEB21560.1| hypothetical protein BIFCAT_00517 [Bifidobacterium catenulatum DSM
           16992]
          Length = 484

 Score =  410 bits (1054), Expect = e-112,   Method: Composition-based stats.
 Identities = 161/453 (35%), Positives = 246/453 (54%), Gaps = 23/453 (5%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD----DADLIVLNTCHIREKAAEKVYS 82
           F+V + GCQMNV+DS R+  +  + GY           D DLIV+NTC +RE AAE++Y 
Sbjct: 31  FYVHTLGCQMNVHDSERISGVLEADGYVPATEEQYLDHDVDLIVMNTCAVRENAAERMYG 90

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +G     K    ++  +L + V GC+AQ + E+I +++P V+ V G +    LP+LL++
Sbjct: 91  TIGLWAERK----RQRPNLQIAVGGCMAQLDREKIAKKAPWVDAVFGTKNIGSLPQLLDQ 146

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           AR             + F      D    R   V++++ I  GC+  CTFC+VP TRG E
Sbjct: 147 ARIEGHAQVKVKEELNYFPSQLPTD----RASKVSSWVAISVGCNNTCTFCIVPTTRGKE 202

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
             R    ++ E R+ +D G  E+TLLGQNVN++ G G+ G++  FS LL +  EI+GL R
Sbjct: 203 HDRRPGDILAEIRQCVDEGAKEVTLLGQNVNSF-GYGI-GDRFAFSKLLRACGEIEGLER 260

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+T+ HP   +D +I A  +   +M  LH P+QSGSDRIL++M R + + ++  I+ +I
Sbjct: 261 VRFTSPHPAAFTDDVIAAMAETPNVMHQLHFPLQSGSDRILRAMRRSYRSAKFLDILRKI 320

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R   PD  IS+D IVGFPGET++DF+ T+ +V++  +A AF+F YSPR GTP + M EQV
Sbjct: 321 REAMPDAQISTDIIVGFPGETEEDFQETLRVVEEARFASAFTFIYSPRPGTPAAEM-EQV 379

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG----KLVGRSPWLQSV 438
             +V  +R   L                G+ +EV++     +K     ++ GR      V
Sbjct: 380 PHDVVQDRFERLVALQERITEENLKTFEGRDVEVMVTGASGKKDAATHRVTGREKTGVLV 439

Query: 439 VLNSKN----HNIGDIIKVRITDVKISTLYGEL 467
            +          +GD +   IT      L  + 
Sbjct: 440 HVGVPEGEPMPQVGDFVTATITHAGRHNLIADP 472


>gi|302338928|ref|YP_003804134.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Spirochaeta smaragdinae
           DSM 11293]
 gi|301636113|gb|ADK81540.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Spirochaeta smaragdinae
           DSM 11293]
          Length = 440

 Score =  410 bits (1053), Expect = e-112,   Method: Composition-based stats.
 Identities = 155/446 (34%), Positives = 254/446 (56%), Gaps = 16/446 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           RFF+++YGCQMN+ +S  M     + G+      ++AD+++LNTC +R+ A ++++  +G
Sbjct: 4   RFFLETYGCQMNIAESNAMTLQLEALGWSAAERPEEADIVLLNTCAVRQTAEDRIWGRIG 63

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL-LERAR 144
             + LK S      D  ++V GC+A+  GEEI++ S  V+ V+G     +L E+      
Sbjct: 64  YYKFLKES-----RDFTLIVTGCMAERLGEEIIKESKAVDYVLGTFQKRKLSEIACGHGE 118

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
               V   D SV   F+        +  K    AFL I  GC+ FC++C+VPY RG EIS
Sbjct: 119 THAPVKADDLSVSPHFQFEP----YHLAKGAFKAFLPIMHGCNNFCSYCIVPYVRGREIS 174

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI-KGLVRL 263
           RS   +  E  +L + GV EITLLGQNVN++           F DLL  ++ +   +  +
Sbjct: 175 RSPEDIFREIERLEEKGVREITLLGQNVNSYNWNDT----LRFPDLLAKIASMTDSIRWI 230

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+ +SHP+D+   LI+   + + +  ++HLPVQ GS+ +L+ MNR++T   Y  +++ +R
Sbjct: 231 RFMSSHPKDIPQELIRVIAEHETVCNHIHLPVQHGSNSVLRRMNRKYTREHYFDLVEMMR 290

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           SV P +++S+D ++GFPGE+++DF  T+DLV ++G+  AF++ Y+PR GT   +M EQV 
Sbjct: 291 SVIPGLSLSTDLMIGFPGESEEDFELTLDLVRQVGFDDAFTYYYNPREGTAAYDMAEQVP 350

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRSPWLQSVVLNS 442
             VK +RL  L +  RE   +   A +G    VL+E+  K+ +G+L+ R+   + V    
Sbjct: 351 HEVKLDRLKTLIELQREISFARRKARIGDSERVLVEQRAKKREGELLARTNRNEMVAFPG 410

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
               IG  + V +  +  +T  GE+V
Sbjct: 411 GEGLIGSFVPVVLKTLHGNTFRGEVV 436


>gi|149277185|ref|ZP_01883327.1| 2-methylthioadenine synthetase [Pedobacter sp. BAL39]
 gi|149232062|gb|EDM37439.1| 2-methylthioadenine synthetase [Pedobacter sp. BAL39]
          Length = 482

 Score =  410 bits (1053), Expect = e-112,   Method: Composition-based stats.
 Identities = 161/453 (35%), Positives = 254/453 (56%), Gaps = 15/453 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ +++SYGCQMN  DS  +  +   QG+E      +AD++ +NTC IRE A ++V + L
Sbjct: 31  RKLYIESYGCQMNFADSEIVASILKDQGFETTGDYKEADVVFINTCSIRENAEQRVRNRL 90

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            +    K         L+V V GC+A+    + L    +V+VVVGP  Y  LP+L+ +  
Sbjct: 91  SQFSAEKRK----NPKLVVGVLGCMAERLKSKFLEEEKLVDVVVGPDAYRDLPQLIGQVE 146

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G + ++   S E+ +  +S V        G+TAF++I  GCD  C+FCVVP+TRG E S
Sbjct: 147 EGHKAINVLLSREETYADISPVRLN---GNGITAFISIMRGCDNMCSFCVVPFTRGRERS 203

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK-----CTFSDLLYSLSEIKG 259
           R    ++ EA+ L+D G  E+TLLGQNV++++ KG D E+       F+ LL  ++ +  
Sbjct: 204 RDPHSILAEAQDLVDKGYKEVTLLGQNVDSYKWKGADAEEGAEIEVNFAQLLEKVALLSP 263

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
            +R+R++TSHP+D++D ++      D +  Y+HLPVQSGS R+L+ MNR +T   Y   +
Sbjct: 264 ELRVRFSTSHPKDITDEVLYTIAKYDNICNYIHLPVQSGSSRVLELMNRTYTREWYINRV 323

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NM 378
           D IR + P  AISSD I GF  ET+++ + T+ ++D +GY  AF+F YS R GT  +  +
Sbjct: 324 DAIRRIIPGCAISSDIIAGFCTETEEEHQETLSMMDYVGYDFAFTFSYSERPGTLAARKL 383

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQS 437
            + + E VK  RL  +  K +E  +      VG +  +L+E   K+  K   GR+     
Sbjct: 384 EDDIPEPVKKRRLAEILLKQQETSLYRLQQFVGTMQRILVEGTSKKSDKDFCGRNDQNAM 443

Query: 438 VVLNS-KNHNIGDIIKVRITDVKISTLYGELVV 469
           VV  + +    G  + V +     +TL G +VV
Sbjct: 444 VVFPAVEGVKAGTYVNVHVDRCTSATLLGTVVV 476


>gi|154488819|ref|ZP_02029668.1| hypothetical protein BIFADO_02127 [Bifidobacterium adolescentis
           L2-32]
 gi|154082956|gb|EDN82001.1| hypothetical protein BIFADO_02127 [Bifidobacterium adolescentis
           L2-32]
          Length = 484

 Score =  410 bits (1053), Expect = e-112,   Method: Composition-based stats.
 Identities = 161/473 (34%), Positives = 249/473 (52%), Gaps = 25/473 (5%)

Query: 9   GVAHMVSQIVDQCIVPQR--FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD----DA 62
             + +     +      +  F+V + GCQMNV+DS R+  +  + GY           D 
Sbjct: 11  RASKLAEPAANDTPTRGKGVFYVHTLGCQMNVHDSERIAGVLEADGYVPATEEQYLNHDI 70

Query: 63  DLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSP 122
           DLIV+NTC +RE AAE++Y  +G    LK    +E  +L + V GC+AQ + E+I +++P
Sbjct: 71  DLIVMNTCAVRENAAERMYGTIGLWAELK----RERPNLQIAVGGCMAQLDREKIAKKAP 126

Query: 123 IVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTI 182
            V+ V G +    LP+LL++A              + F      D    R   V++++ I
Sbjct: 127 WVDAVFGTKNIGSLPQLLDQACIEGHAQVKVQEELNYFPSQLPTD----RASKVSSWVAI 182

Query: 183 QEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG 242
             GC+  CTFC+VP TRG E  R    ++ E R+ +D G  E+TLLGQNVN++ G G+ G
Sbjct: 183 SVGCNNTCTFCIVPTTRGKEHDRRPGDILAEIRQCVDEGAKEVTLLGQNVNSF-GYGI-G 240

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
           ++  FS LL +  EI GL R+R+T+ HP   +D +I A  +   +M  LH P+QSGSDRI
Sbjct: 241 DRFAFSKLLRACGEIDGLERVRFTSPHPAAFTDDVIAAMAETPNVMHQLHFPLQSGSDRI 300

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           L++M R + + ++  I+ +IR   PD  IS+D IVGFPGET++DF+ T+ +V++  +A A
Sbjct: 301 LRAMRRSYRSAKFLDILRKIREAMPDAQISTDIIVGFPGETEEDFQETLRVVEEARFASA 360

Query: 363 FSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422
           F+F YSPR GTP + M EQV  +V  +R   L                G+ +EV++    
Sbjct: 361 FTFIYSPRPGTPAAEM-EQVPHDVVQDRFERLVALQERITEENLKTFEGRDVEVMVTGAS 419

Query: 423 KEKG----KLVGRSPWLQSVVLNSKN----HNIGDIIKVRITDVKISTLYGEL 467
            +K     ++ GR      V +          +GD +   +T      L  + 
Sbjct: 420 GKKDAATHRVTGREKTGVLVHVGVPEGESMPQVGDFVTATVTHAGRHNLIADP 472


>gi|319955951|ref|YP_004167214.1| tRNA-i(6)a37 thiotransferase enzyme miab [Nitratifractor salsuginis
           DSM 16511]
 gi|319418355|gb|ADV45465.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Nitratifractor salsuginis
           DSM 16511]
          Length = 434

 Score =  410 bits (1053), Expect = e-112,   Method: Composition-based stats.
 Identities = 161/448 (35%), Positives = 248/448 (55%), Gaps = 19/448 (4%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++ ++++ GC MNV D+  M       + Y+   ++++ADLI++NTC +REK   K++
Sbjct: 1   MSKKLYIETLGCAMNVRDTEHMIAELSRKEDYDLTENLEEADLIIINTCSVREKPVAKLF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S +GR R  +    K      + VAGC A   GEEI+RR+P V+ V+G +   ++ ++L 
Sbjct: 61  SEIGRFRKQRKEGAK------IGVAGCTASHLGEEIIRRAPYVDFVLGARNVSKITKVLN 114

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
                +   D D S             G  R     A + I  GCDK CTFC+VP TRG 
Sbjct: 115 EKHAVEVSTDYDES---------TYPFGEYRSNPFKAMVNISIGCDKKCTFCIVPATRGD 165

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK--CTFSDLLYSLSEIKG 259
           EIS   S ++ E +K +  G  E+ LLGQNVN +  +   GE     F++LL  +S ++G
Sbjct: 166 EISIPSSLILQEVKKAVQAGAKEVILLGQNVNNYGRRFSAGEDEVRNFTELLKRVSAVEG 225

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           L R+R+ + HP  M D  ++       + P +H+P+QSGS R+LK M R ++   +    
Sbjct: 226 LERIRFQSPHPLHMDDAFLEEFASNPKICPQIHVPLQSGSTRLLKRMKRGYSKEWFLDRC 285

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
           +RIR++ P +AIS+D IVGFPGE+++DF  TM++V+K+ + Q FSF+YSPR  T  +   
Sbjct: 286 ERIRAMVPGVAISTDIIVGFPGESEEDFAETMEVVEKVRFDQMFSFRYSPRPMTAAAEYE 345

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV 439
           +Q+ E V AERL  LQ +  E       A  G+I EV  E+  +   ++ GRS   + V 
Sbjct: 346 DQIPETVAAERLKRLQSRQDEITDEIMAAQEGRIHEVYFEEL-RPGNRVAGRSADGRLVS 404

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGEL 467
           +      +G I+ VRIT     +L GEL
Sbjct: 405 VEGSEELLGKILPVRITRAMRRSLEGEL 432


>gi|229890675|sp|Q0S1P3|MIAB_RHOSR RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
          Length = 505

 Score =  410 bits (1053), Expect = e-112,   Method: Composition-based stats.
 Identities = 152/442 (34%), Positives = 243/442 (54%), Gaps = 17/442 (3%)

Query: 16  QIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREK 75
             +DQ    + + V++YGCQMNV+DS R+  +    GY +  +    DL+V NTC +RE 
Sbjct: 2   DTIDQTPH-RSYEVRTYGCQMNVHDSERLSGLLEDAGYTKAAAGQAPDLVVFNTCAVREN 60

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135
           A  K+Y  L  +   K        D+ + V GC+AQ + + +++++P V+VV G      
Sbjct: 61  ADNKLYGNLSHLAPAKER----NPDMQIAVGGCLAQKDRDVVVKKAPWVDVVFGTHNIGS 116

Query: 136 LPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
           LP LL+RAR  +R         + F           R+     +++I  GC+  CTFC+V
Sbjct: 117 LPALLDRARHNQRAEVEILEALEAF----PSTLPAKRESAYAGWVSISVGCNNTCTFCIV 172

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT----FSDLL 251
           P  RG E+ R    ++ E + L++ GV E+TLLGQNVNA+     D ++      F+ LL
Sbjct: 173 PALRGKEVDRRPGDILAEVQALVNEGVVEVTLLGQNVNAYGVSFADPDQPRDRGAFAALL 232

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
            +  +I GL R+R+T+ HP + +D +I+A  +   + P LH+P+QSGSDR+LK+M R + 
Sbjct: 233 RACGQIDGLERVRFTSPHPAEFTDDVIEAMAETPNVCPQLHMPLQSGSDRVLKAMRRSYR 292

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
              +  IID++R+  P  AI++D IVGFPGET++DF+ T+D+V +  +  A++F+YS R 
Sbjct: 293 KSRFLGIIDKVRTAMPHAAITTDIIVGFPGETEEDFQDTLDVVRQARFTSAYTFQYSKRP 352

Query: 372 GTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI---EK-HGKEKGK 427
           GTP + M EQ+ + V  ER   L     +  +  N   VG  +E+L+   E     E  +
Sbjct: 353 GTPAAEMDEQLPKAVVQERYERLIALQEQITLEENQKLVGAEVELLVAAGEGRKNAETAR 412

Query: 428 LVGRSPWLQSVVLNSKNHNIGD 449
           + GR+   + V    + +  G 
Sbjct: 413 MSGRARDGRLVHFRPEGNLDGT 434


>gi|33866174|ref|NP_897733.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Synechococcus
           sp. WH 8102]
 gi|81574233|sp|Q7U5R0|MIAB_SYNPX RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|33639149|emb|CAE08155.1| 2-methylthioadenine synthetase [Synechococcus sp. WH 8102]
          Length = 460

 Score =  410 bits (1053), Expect = e-112,   Method: Composition-based stats.
 Identities = 173/454 (38%), Positives = 257/454 (56%), Gaps = 23/454 (5%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           +++ ++GCQMN  DS RM  +  S GY   N+  +ADL++ NTC IR+ A +KVYS+LGR
Sbjct: 12  YWITTFGCQMNKADSERMAGILESMGYRAANAELEADLVLYNTCTIRDNAEQKVYSYLGR 71

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
               K    +   +L ++VAGCVAQ EGE +LRR P +++V+GPQ   RL  LL R   G
Sbjct: 72  QAQRK----RLDPNLTLIVAGCVAQQEGESLLRRVPELDLVMGPQHANRLEVLLNRVDSG 127

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           ++VV T+       E ++       R   +  ++ +  GC++ CT+CVVP  RG E SR 
Sbjct: 128 QQVVATE--DHHILEDITTAR----RDSSICGWVNVIYGCNERCTYCVVPSVRGKEQSRL 181

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG------EKCTFSDLLYSLSEIKGL 260
              +  E   L   G  EITLLGQN++A  G+ L G       + T +DLL+ + ++ G+
Sbjct: 182 PEAIRLEMEGLAAQGYKEITLLGQNIDA-YGRDLPGITPEGRRQHTLTDLLHQVHDVSGI 240

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+ TSHPR  ++ LI A  DL  L  + H+P QSG + +L++M R +T   YR+IID
Sbjct: 241 KRIRFATSHPRYFTERLIDACADLPKLCEHFHIPFQSGDNDVLRAMARGYTVERYRRIID 300

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           RIR   PD ++S+D IV FPGETD  ++ T+DL+++IG+ Q  +  YSPR  TP +    
Sbjct: 301 RIRERMPDASLSADVIVAFPGETDLQYQRTLDLIEEIGFDQVNTAAYSPRPNTPAATWDN 360

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVV 439
           Q+ E VK  RL  +   +       N    G+  EVL E    K+  +L+GR+   +   
Sbjct: 361 QLPEEVKVIRLQTINALVERCARERNARYAGRTEEVLAEGINPKDPSQLMGRTRTNRLTF 420

Query: 440 L-----NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 +   HN GD++ VRI  V+  +L G  +
Sbjct: 421 FQAAGPDGHQHNPGDLVNVRIDAVRSFSLSGTPL 454


>gi|297621452|ref|YP_003709589.1| miaB-methiolase [Waddlia chondrophila WSU 86-1044]
 gi|297376753|gb|ADI38583.1| miaB-methiolase [Waddlia chondrophila WSU 86-1044]
          Length = 439

 Score =  410 bits (1053), Expect = e-112,   Method: Composition-based stats.
 Identities = 157/445 (35%), Positives = 248/445 (55%), Gaps = 12/445 (2%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+ FFV++YGCQMN  D+  +  +  S+G ER    + ADL++ NTC IR+ A  KV   
Sbjct: 4   PKNFFVRTYGCQMNELDTEVIVGLLESRGLERTEDENLADLLIYNTCSIRDLAERKVMGK 63

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LG++   +           + V GC+A A+ + + R+ P ++ V+G    + L  +L+  
Sbjct: 64  LGKLGRSRKKDKM------IGVTGCMANAKKDTLFRKLPHIDFVLGTNNIHDLNSVLDEV 117

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
                   T     D+     +      R   + AF++I  GCDKFCT+CVVPYTRG E+
Sbjct: 118 M----ATGTQSCRTDEKFSFELDYASAKRDDHLKAFVSIIRGCDKFCTYCVVPYTRGPEV 173

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SRS   +++E ++L D G  E+TLLGQNVN+  GK      C F DLL  + +  G+ R+
Sbjct: 174 SRSPEHIIEEIKQLADKGYKEVTLLGQNVNS-YGKDQPEWNCLFHDLLERIDQETGIARV 232

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+ TSHP D++  L++A  D D L  ++H P+QSGS RIL+ M+R +T  +Y + +  ++
Sbjct: 233 RFMTSHPVDITRELMEAIRDFDSLCEFVHFPIQSGSSRILRKMHRIYTLEQYMEKVQMLK 292

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
            + P++++ +D IVGFP ET+++F+ T D + +I Y+ AF F YSPR GTP     + + 
Sbjct: 293 EIVPNVSLGTDVIVGFPTETEEEFQMTYDAMKEIEYSVAFIFAYSPRKGTPAMRWKDDIP 352

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GRSPWLQSVVLNS 442
           E VK ERL  L +             +G+ +EVL+E+   +  + V GR+   + V+   
Sbjct: 353 EEVKQERLHRLMELQESIYKKQLQEMMGKEVEVLVERRNSKDDRFVKGRTSCWKKVIFPG 412

Query: 443 KNHNIGDIIKVRITDVKISTLYGEL 467
            +  IG + KV +      TL G++
Sbjct: 413 TDEMIGTLQKVIVDGYSHQTLIGKM 437


>gi|311069144|ref|YP_003974067.1| YqeV protein [Bacillus atrophaeus 1942]
 gi|310869661|gb|ADP33136.1| YqeV [Bacillus atrophaeus 1942]
          Length = 451

 Score =  410 bits (1053), Expect = e-112,   Method: Composition-based stats.
 Identities = 138/449 (30%), Positives = 233/449 (51%), Gaps = 21/449 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
                + GC++N Y++  +  +F   GYER      AD+ V+NTC +     +K    + 
Sbjct: 3   TVAFHTLGCKVNHYETEAIWQLFKEAGYERKEFEQAADVYVINTCTVTNTGDKKSRQVIR 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R        I+   D ++ V GC AQ    EI+   P V++VVG Q   ++   +E+ R 
Sbjct: 63  RA-------IRHNPDGVICVTGCYAQTSPAEIMA-IPGVDIVVGTQDREKMLGYIEQYRQ 114

Query: 146 GKRVVDTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            ++ ++   ++     FE L +            A L IQEGC+ FCTFC++P+ RG+  
Sbjct: 115 ERQPINGVGNIMKARVFEELDVP----AFTDRTRASLKIQEGCNNFCTFCIIPWARGLLR 170

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKGLVR 262
           SR   +V+ +A++L+D G  EI L G +     G G D +   F+ LL  L + + GL R
Sbjct: 171 SRDPEEVIKQAQQLVDAGYKEIVLTGIHTG---GYGEDMKDYNFAKLLRELDARVDGLKR 227

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R ++     ++D +I+     D ++ +LH+P+QSGS+ +LK M R++T   +   ++++
Sbjct: 228 IRISSIEASQITDEVIEVLDRSDKIVRHLHIPIQSGSNTVLKRMRRKYTMEFFADRLNKL 287

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           +   P +A++SD IVGFPGET+++F  T D + +  +++   F YS R GTP + M +QV
Sbjct: 288 KKALPGLAVTSDVIVGFPGETEEEFMETYDFIKENRFSELHVFPYSKRTGTPAARMEDQV 347

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK---LVGRSPWLQSVV 439
           DENVK ER+  L     +    +     G+++E++ E+  KE  +    VG +     VV
Sbjct: 348 DENVKNERVHQLIALSDQLAKEYASDYEGEVLEIIPEEAFKETNESNLFVGYTDNYMKVV 407

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG ++KV+I         G+ V
Sbjct: 408 FKGTEDLIGKLVKVKIEKAGYPYNEGQFV 436


>gi|289449396|ref|YP_003475195.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Clostridiales genomosp.
           BVAB3 str. UPII9-5]
 gi|289183943|gb|ADC90368.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Clostridiales genomosp.
           BVAB3 str. UPII9-5]
          Length = 485

 Score =  410 bits (1053), Expect = e-112,   Method: Composition-based stats.
 Identities = 156/462 (33%), Positives = 250/462 (54%), Gaps = 32/462 (6%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + +F++++GCQ N  DS ++  +    GY    + + AD++++NTC +RE A+++ +  L
Sbjct: 29  KTYFIQTFGCQQNDNDSEKLAGLLQKMGYTPAANRESADIVLINTCSVRENASDRFFGNL 88

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G ++ LK    K    +L+   GC+ + E   E+I R  P V+V++ P   YR PELL R
Sbjct: 89  GILKPLK----KSNPGMLICTCGCMMKQEEVVEKIKRSYPFVDVLLAPSDLYRFPELLWR 144

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
              G R V    + +   E + ++      +R   A  TI  GC+ +CT+C+VP+TRG E
Sbjct: 145 RLNGTRRVYDITADDVVAEGIPVL-----HERKYRALCTIMYGCNNYCTYCIVPFTRGRE 199

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR   +++ E ++L  +G  E+ LLGQNVN+  G+ L  +K +F++LL   +E  GL R
Sbjct: 200 RSRQPEEILRELQELAASGYTEVMLLGQNVNS-YGRDL-ADKMSFAELLALAAEHSGLPR 257

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +RY TSHP+D+S  LI        +  ++HLP+QSGSD +L+ MNR +    Y  I+D  
Sbjct: 258 IRYMTSHPKDLSPELIDVMAAYPNIERHIHLPLQSGSDAVLRKMNRHYNIARYMSIVDLA 317

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           +   PD++I++D IVGFPGET+ DF  T+ +V ++GY  AF+F+YSPR GTP +    QV
Sbjct: 318 KRKIPDLSITTDIIVGFPGETEADFAETLRIVGEVGYDSAFTFQYSPRPGTPAAKWTNQV 377

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLN 441
              V +ER   L     +  ++ N   + +  EVLIE       G   GR      +   
Sbjct: 378 PAEVVSERFDRLVTLQNQNSLAANLRRLNRSGEVLIEGISDHNPGMFTGRFSDNHLINFE 437

Query: 442 SKNHNI------------------GDIIKVRITDVKISTLYG 465
              + +                  G + +V++T+ K  +L G
Sbjct: 438 IPANELAALSGRTLSPIAAAGIVEGKLAQVKVTEAKTFSLQG 479


>gi|295706646|ref|YP_003599721.1| ribosomal protein S12 methylthiotransferase [Bacillus megaterium
           DSM 319]
 gi|294804305|gb|ADF41371.1| ribosomal protein S12 methylthiotransferase [Bacillus megaterium
           DSM 319]
          Length = 452

 Score =  409 bits (1052), Expect = e-112,   Method: Composition-based stats.
 Identities = 139/449 (30%), Positives = 243/449 (54%), Gaps = 21/449 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
                + GC++N Y++  +  +F  QGYERV     AD+ V+NTC +     +K    + 
Sbjct: 3   TVAFHTLGCKVNHYETEAIWQLFKGQGYERVEYEQTADVYVINTCTVTNTGDKKSRQVIR 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R        +++  D ++ V GC AQ    EI+   P V++VVG Q   ++ + +E+ + 
Sbjct: 63  RA-------VRKNPDAVICVTGCYAQTSPAEIMA-IPGVDIVVGTQDRVKMLDYIEQFKK 114

Query: 146 GKRVVDTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            ++ ++   ++     +E L +            A L IQEGC+ FCTFC++P+ RG+  
Sbjct: 115 ERQPINGVGNIMKTRIYEELDVP----AFTDRTRASLKIQEGCNNFCTFCIIPWARGLMR 170

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKGLVR 262
           SR   +VV +A++L+D G  EI L G +     G G D +    + LL  L S++KGL R
Sbjct: 171 SRDPKEVVAQAQQLVDAGYKEIVLTGIHTG---GYGEDMKDYNLAQLLRDLESQVKGLKR 227

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R ++     ++D +I+     ++++ +LH+P+QSGS+ +LK M R++T   + + ++R+
Sbjct: 228 IRISSIEASQITDEVIEVLDQSEMVVRHLHIPLQSGSNTVLKRMRRKYTMEFFGERLNRL 287

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           +   P +AI+SD IVGFPGET+++F  T + + + G+++   F YS R GTP + M +Q+
Sbjct: 288 KEALPGLAITSDVIVGFPGETEEEFMETYNFIKEHGFSELHVFPYSKRTGTPAARMTDQI 347

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK---GKLVGRSPWLQSVV 439
           DE VK +R+  L +   +    +     G+++EV+ E+  KE    G  VG +     VV
Sbjct: 348 DEEVKNQRVHRLIELSNQLAKEYASTFEGEVLEVIPEEKYKEDPESGLYVGYTDNYLKVV 407

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
             +    +G ++KV+I+        GE V
Sbjct: 408 FKASEEMVGKLVKVKISKAGYPYNEGEFV 436


>gi|297735074|emb|CBI17436.3| unnamed protein product [Vitis vinifera]
          Length = 663

 Score =  409 bits (1052), Expect = e-112,   Method: Composition-based stats.
 Identities = 161/484 (33%), Positives = 252/484 (52%), Gaps = 32/484 (6%)

Query: 13  MVSQIVDQCIVPQ-RFFVKSYGCQMNVYDSLRMEDMFFSQGY-ERVNSMDDADLIVLNTC 70
               +    I+P+ R + ++YGCQMN+ D   +  +    GY E V   + A++I +NTC
Sbjct: 169 QPDPVSASEILPRGRIYHETYGCQMNINDMEIVLSIMKKAGYNEVVEVPESAEVIFINTC 228

Query: 71  HIREKAAEKVYSFLGRIRNLKNSRIKEG--------GDLLVVVAGCVAQAEGEEILRRSP 122
            IR+ A +KV+  L     LK                   VVV GC+A+   ++IL    
Sbjct: 229 AIRDNAEQKVWQRLNYFWFLKRHWKSNVSIGRADSLHPPKVVVLGCMAERLKDKILDADK 288

Query: 123 IVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTI 182
           +V+VV GP  Y  LP LLE   +G++ ++T  S+E+ +  +S V      K  VTAF++I
Sbjct: 289 MVDVVCGPDAYRDLPRLLEEVDYGQKGINTLLSLEETYADISPVRIS---KNSVTAFVSI 345

Query: 183 QEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG-KGLD 241
             GC+  C+FC+VP+TRG E SR +  +V E  +L   GV E+ LLGQNVN++    G D
Sbjct: 346 MRGCNNMCSFCIVPFTRGRERSRPVESIVREVAELWKEGVKEVMLLGQNVNSYNDASGFD 405

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
            E    ++  + LSE    +R RYT+ HP+D  D L+    D   +   +HLP Q+GS  
Sbjct: 406 KEVEPGAN--WKLSEEFPEMRFRYTSPHPKDFPDELLYLMRDRYNVCKSIHLPAQTGSST 463

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
           +L+ M R +T   Y  ++ +IR + PD+ I+SDFI GF GET++++  T+ LV  +GY  
Sbjct: 464 VLERMRRGYTREAYLDLVQKIRRIVPDVGITSDFICGFCGETEEEYADTISLVKAVGYDM 523

Query: 362 AFSFKYSPRLGTPGSN-MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
           A+ F YS R  T      ++ V +N+K  RL  + +  RE      D+ +G +  VL+E 
Sbjct: 524 AYMFAYSMREKTHAHRNYVDDVPDNIKQRRLAEMIEVFRESTGQCYDSQIGTVQLVLVEG 583

Query: 421 HGKE--KGKLVGRSPWLQSVVLNSK-------------NHNIGDIIKVRITDVKISTLYG 465
             K     +L+G++     V   +              N  +GD ++VRI     ++L+G
Sbjct: 584 PNKRAPDTELIGKTDRGHRVSFKNTPVPHWDDDVGGNQNPRVGDFVEVRILTSTRASLFG 643

Query: 466 ELVV 469
           E + 
Sbjct: 644 EALA 647


>gi|315645963|ref|ZP_07899084.1| RNA modification enzyme, MiaB family protein [Paenibacillus vortex
           V453]
 gi|315278724|gb|EFU42038.1| RNA modification enzyme, MiaB family protein [Paenibacillus vortex
           V453]
          Length = 447

 Score =  409 bits (1052), Expect = e-112,   Method: Composition-based stats.
 Identities = 137/447 (30%), Positives = 239/447 (53%), Gaps = 20/447 (4%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
               + GC++N YD+  +   F ++GY++V+    AD+ ++NTCH+     +K    + R
Sbjct: 4   VAFYTLGCKVNFYDTEAIWQYFKNEGYDQVDFEQTADVYLINTCHVTNTGDKKSRQMIRR 63

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
                   ++   + +V V GC AQ    EIL   P V++V+G Q   ++ + ++     
Sbjct: 64  A-------VRRNPEAIVAVTGCYAQTSPAEILD-IPGVDLVIGNQDRDKIMDFIQDIEKT 115

Query: 147 KRVVDTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
           ++ ++   ++     FE + + D          AFL IQ+GC+ FCTFC++P++RG+  S
Sbjct: 116 RQPINAVRNIMKTRVFEEMDVPD----FAERTRAFLKIQDGCNNFCTFCIIPWSRGLSRS 171

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R    ++ +A +L+  G  EI L G +     G G D E+   SDLL+ L  + GL R+R
Sbjct: 172 RDPKSIIQQAHQLVGAGYKEIVLTGIHTG---GYGDDLEEYRLSDLLWDLDRVDGLERIR 228

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
            ++     + + ++        +  +LH+P+Q+G D +LK M R++T  E+   +  IR 
Sbjct: 229 ISSIEASQIDEKMLDVLNRSTKMCRHLHIPLQAGDDTVLKRMRRKYTTEEFYNKMGLIRQ 288

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             PD+ I++D IVGFPGETD+ FR   DL+  I +++   F YS R GTP + M +QVDE
Sbjct: 289 AMPDVGITTDVIVGFPGETDEMFRNGYDLMKAIQFSEMHVFPYSKRTGTPAARMEDQVDE 348

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK---EKGKLVGRSPWLQSVVLN 441
            VK  R+  L     + Q+++ +  VG+I++V+ E+  K   + GK+ G S     ++ N
Sbjct: 349 EVKNARVHDLIDLSEQLQLAYAEQFVGKILDVIPEREYKGAPKGGKMQGYSDNYLQLIFN 408

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
             +   G + +V++T   ++   GEL+
Sbjct: 409 GSSDLEGKLCRVKVTKAGVNECEGELL 435


>gi|304403939|ref|ZP_07385601.1| RNA modification enzyme, MiaB family [Paenibacillus curdlanolyticus
           YK9]
 gi|304346917|gb|EFM12749.1| RNA modification enzyme, MiaB family [Paenibacillus curdlanolyticus
           YK9]
          Length = 464

 Score =  409 bits (1052), Expect = e-112,   Method: Composition-based stats.
 Identities = 142/448 (31%), Positives = 236/448 (52%), Gaps = 21/448 (4%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD-DADLIVLNTCHIREKAAEKVYSFLG 85
               + GC++N YD+  M  +F + GYE+V+  +  AD+ V+NTC +     +K      
Sbjct: 4   VAFYTLGCKVNFYDTEAMWQLFKNDGYEQVDFEERTADVYVINTCTVTNTGDKKSRQI-- 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                    I+   D ++ V GC AQ    EI+   P V++V+G Q   +L   + + + 
Sbjct: 62  -----IRRAIRRNPDAVIAVTGCYAQTSPAEIM-EIPGVDLVIGTQDRDKLLGYVGQIQQ 115

Query: 146 GKRVVDTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            ++ V+   ++     FE L + D          AFL IQEGC+ FCTFC++P++RG+  
Sbjct: 116 DRQPVNAVRNIMKTREFEELDVPD----FAERTRAFLKIQEGCNNFCTFCIIPWSRGLSR 171

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR    V+ +A +L++ G  EI L G +     G G D E    SDLL+ L +++GL R+
Sbjct: 172 SRDPKSVIAQAEQLVEAGYKEIVLTGIHTG---GYGDDLENYRLSDLLWDLDKVEGLERI 228

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R ++     + D +I        +  +LH+P+Q+G D +LK M R++T  E+ + +  + 
Sbjct: 229 RISSIEASQIDDKMIDVLNRSSKMCRHLHIPLQAGEDAVLKRMRRKYTTAEFAEKVKMLH 288

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              P +AI++D IVGFPGETD+ F      + +IG+++   F YS R GTP + M +QVD
Sbjct: 289 RAMPGVAITTDVIVGFPGETDEMFEEGYRFMQEIGFSEMHVFPYSKRTGTPAARMEDQVD 348

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK---EKGKLVGRSPWLQSVVL 440
           E VK +R+  L     + Q+ +    VG++++V+ E+  K     G ++G S     VV 
Sbjct: 349 EEVKNDRVHKLIDLSEKMQLDYAKQWVGEVVDVIPERDYKGAPGTGLVMGYSGNYLQVVF 408

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 IG + +V+IT+  ++   G+LV
Sbjct: 409 EGSEALIGQLCRVKITEAGVNECRGQLV 436


>gi|302389477|ref|YP_003825298.1| RNA modification enzyme, MiaB family [Thermosediminibacter oceani
           DSM 16646]
 gi|302200105|gb|ADL07675.1| RNA modification enzyme, MiaB family [Thermosediminibacter oceani
           DSM 16646]
          Length = 441

 Score =  409 bits (1052), Expect = e-112,   Method: Composition-based stats.
 Identities = 150/452 (33%), Positives = 252/452 (55%), Gaps = 15/452 (3%)

Query: 17  IVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA 76
           ++ + I+P++    + GC++N Y+S  M ++F ++GYE V   D AD+ V+NTC +  + 
Sbjct: 1   MIGEVIMPKKVAFYTLGCKVNQYESDAMAELFKNRGYELVGFDDVADVYVINTCTVTNEG 60

Query: 77  AEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL 136
           A K    + +         +   +  + V GC AQ E EE+  R P V+VVVG +  +++
Sbjct: 61  ARKSRQIIRKAA-------RRNPEATIAVVGCYAQLEAEEV-SRIPGVDVVVGTKDRHKI 112

Query: 137 PELLERA-RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
            +L+E+A +  +++++ +  ++ +        G   R R   AFL IQEGC+ FC++C++
Sbjct: 113 VDLVEQAGKNNEKIIEVEDIMQTRNFEEIAFRGHRQRTR---AFLKIQEGCNMFCSYCII 169

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
           PY RG   SR+L  ++ EA  L  +G  EI L G ++    G    G   T  D++  LS
Sbjct: 170 PYVRGPVRSRTLESIIREAENLAGDGFKEIVLTGIHLG-LYGADFKGGP-TLYDVIERLS 227

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
            I+G+ R+R ++    ++SD LIK    LD    + H+P+QSGSDRILK MNRR+T  E+
Sbjct: 228 RIEGIKRIRLSSIEAMELSDDLIKKLASLDNFCHHFHIPLQSGSDRILKLMNRRYTTAEF 287

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
            + +  IR + PD+ I++D IVGFPGETD+DF  T   +++  +++   FK+SPR GTP 
Sbjct: 288 EERLRFIRDIMPDVGITTDVIVGFPGETDEDFEITRKFIERAAFSRLHVFKFSPRKGTPA 347

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWL 435
           + M +Q+   VK  R   L +  R  +  F D   G++++VL E+    +G   G +   
Sbjct: 348 AEMPDQIPGPVKESRSRELIRLSRRLERDFRDGLTGKVLDVLFEERD-NRGLYHGLTDNY 406

Query: 436 QSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
             V + S       ++ VR+ + +   ++GE+
Sbjct: 407 IRVAVWSDQDLHNRLLPVRLIENRDEYIFGEI 438


>gi|328554278|gb|AEB24770.1| ribosomal protein S12 methylthiotransferase [Bacillus
           amyloliquefaciens TA208]
 gi|328912675|gb|AEB64271.1| ribosomal protein S12 methylthiotransferase [Bacillus
           amyloliquefaciens LL3]
          Length = 451

 Score =  409 bits (1052), Expect = e-112,   Method: Composition-based stats.
 Identities = 137/449 (30%), Positives = 232/449 (51%), Gaps = 21/449 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
                + GC++N Y++  +  +F   GYER      AD+ V+NTC +     +K    + 
Sbjct: 3   TVAFHTLGCKVNHYETEAIWQLFKDAGYERKEFEQTADVYVINTCTVTNTGDKKSRQVIR 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R        I++  D ++ V GC AQ    EI+   P V++VVG Q   ++   +E+ R 
Sbjct: 63  RA-------IRQNPDGVICVTGCYAQTSPAEIMA-IPGVDIVVGTQDREKMLGYIEQYRE 114

Query: 146 GKRVVDTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            ++ ++   ++     FE L +            A L IQEGC+ FCTFC++P+ RG+  
Sbjct: 115 ERQPINGVGNIMKARVFEELDVP----AFTDRTRASLKIQEGCNNFCTFCIIPWARGLLR 170

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS-EIKGLVR 262
           SR   +V+ +A++L+D G  EI L G +     G G D +   F+ LL  L   ++GL R
Sbjct: 171 SRDPEEVIKQAQQLVDAGYKEIVLTGIHTG---GYGEDMKDYNFAKLLRELDTRVEGLKR 227

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R ++     ++D +I+     D ++ +LH+P+QSGS+ +LK M R++T   +   ++++
Sbjct: 228 IRISSIEASQITDEVIEVLDASDKIVRHLHIPIQSGSNTVLKRMRRKYTMEFFADRLNKL 287

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           +   P +A++SD IVGFPGET+++F  T   + +  +++   F YS R GTP + M +QV
Sbjct: 288 KEALPGLAVTSDVIVGFPGETEEEFMETYRFIKEHKFSELHVFPYSKRTGTPAARMEDQV 347

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK---HGKEKGKLVGRSPWLQSVV 439
           DENVK ER+  L     +    +     G+++E++ E+      E G  VG +     VV
Sbjct: 348 DENVKNERVHKLIALSDQLAKEYASDYEGEVLEIIPEETFKESDEDGMFVGYTDNYMKVV 407

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG ++KV+I         G+ V
Sbjct: 408 FKGSEDLIGKLVKVKIQKAGYPYNEGQFV 436


>gi|302389780|ref|YP_003825601.1| SSU ribosomal protein S12P methylthiotransferase
           [Thermosediminibacter oceani DSM 16646]
 gi|302200408|gb|ADL07978.1| SSU ribosomal protein S12P methylthiotransferase
           [Thermosediminibacter oceani DSM 16646]
          Length = 441

 Score =  409 bits (1052), Expect = e-112,   Method: Composition-based stats.
 Identities = 131/451 (29%), Positives = 224/451 (49%), Gaps = 16/451 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + ++  + S GC  N+ DS  +       GY   +   +AD+I++NTC     A ++   
Sbjct: 1   MKEKIGLVSLGCDKNLVDSEYLLGALLENGYVITSDASEADIIIINTCCFINSAKQESID 60

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +  +   K S    G   +++  GC+AQ  G+ IL+  P ++ V+G   +++LP L+E+
Sbjct: 61  TILEMAQYKTS----GNCKMLIATGCLAQRYGDAILKEIPELDAVIGTGDFHKLPGLIEK 116

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
               +  + T+      ++    V     R     +++ I EGC   C++C +P  RG  
Sbjct: 117 LNNSRLKIITENRSFINYDIKKRV-----RTSNYFSYVKIAEGCSNCCSYCAIPQIRGPY 171

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR +  + +E   L+  GV EI L+ Q+  +  G  + G K +  DLL +L +IKG   
Sbjct: 172 KSRPIESIKEEVELLVSQGVKEINLVAQDTTS-YGMDISG-KPSLPDLLRALVDIKGEFW 229

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R   ++P  + D L++       +  YL +P+Q  +DRIL+ MNR   + + +++I++I
Sbjct: 230 IRILYAYPTHIDDELLELISSSTKIAKYLDIPLQHINDRILRLMNRPINSEQIKKLIEKI 289

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R + PDI I + FIVGFP E+D DF+  +D V    + +  +FKYS   GT  + +  QV
Sbjct: 290 RIIVPDITIRTTFIVGFPTESDSDFQELIDFVKIYRFDRVGAFKYSREEGTYAATLKPQV 349

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQS- 437
            E VK ER   L    +      N+  +G  I VL E +   +   +GRS    P +   
Sbjct: 350 PERVKQERYDQLMTVQQVISKMNNEKMLGSTITVLAESYDPARKMFIGRSQKDAPGVDGT 409

Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           V+   +   +G   +V+IT+     L GE+V
Sbjct: 410 VMFQGEVRQLGRFYRVKITEAFEYDLMGEVV 440


>gi|86606951|ref|YP_475714.1| MiaB tRNA modifying enzyme-like protein [Synechococcus sp.
           JA-3-3Ab]
 gi|86555493|gb|ABD00451.1| MiaB tRNA modifying enzyme-like protein [Synechococcus sp.
           JA-3-3Ab]
          Length = 439

 Score =  409 bits (1052), Expect = e-112,   Method: Composition-based stats.
 Identities = 129/441 (29%), Positives = 222/441 (50%), Gaps = 19/441 (4%)

Query: 32  YGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLK 91
            GC+ N  D+  M  +    GY      D AD +++NTC   E A  +  S L  +    
Sbjct: 3   LGCEKNRVDTEHMLGLLAQAGYRVEGDEDSADYVIVNTCSFIEAARRESVSTLMELAVQG 62

Query: 92  NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVD 151
                      +++AGC+AQ   EE+LR  P    +VG   Y+++ ++++RA  G+RV  
Sbjct: 63  KK---------IIIAGCLAQHFQEELLREIPEAVAIVGTGDYHQIVQVIQRAERGERVNA 113

Query: 152 TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVV 211
              S++   +        Y       A+L + EGCD  C+FC++P+ RG + SR +  ++
Sbjct: 114 VTSSLDYIADETVP---RYRTTHAPVAYLRVAEGCDYRCSFCIIPHLRGKQRSRPIESIL 170

Query: 212 DEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPR 271
            EA +L   GV E+ L+ Q +    G  L GE    ++L+ +L +I  +  +R   ++P 
Sbjct: 171 REAEQLAAEGVQELILISQ-ITTNYGLDLYGEP-RLAELIRALGQIP-IPWIRMLYAYPT 227

Query: 272 DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAI 331
            ++  +++A  +    + YL LP+Q     ILK+MNR        ++I+R+R   P   +
Sbjct: 228 GITPAVVEAIQETPNFLLYLDLPLQHSHPAILKAMNRPWQGQVNDRLIERLRQALPKAVL 287

Query: 332 SSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERL 391
            + FIVGFPGET++ F+  ++ V +  +     F +SP  GTP  ++ +QV E +K ER 
Sbjct: 288 RTSFIVGFPGETEEHFQHLLEFVQRHQFDHVGVFTFSPEEGTPAYHLPQQVPEPLKEERR 347

Query: 392 LCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVLNSKNHNI 447
             L +  +      N   VGQ++ VL+E+     G+ +GRS    P +  VV      ++
Sbjct: 348 ARLMQLQQGIAFRRNREQVGQVVPVLLEQENPRTGEWIGRSPRFAPEVDGVVYVRGPGSL 407

Query: 448 GDIIKVRITDVKISTLYGELV 468
           G ++ V+IT  +   L+G++V
Sbjct: 408 GSLVPVQITRAEPYDLFGQVV 428


>gi|210633082|ref|ZP_03297649.1| hypothetical protein COLSTE_01557 [Collinsella stercoris DSM 13279]
 gi|210159236|gb|EEA90207.1| hypothetical protein COLSTE_01557 [Collinsella stercoris DSM 13279]
          Length = 453

 Score =  409 bits (1052), Expect = e-112,   Method: Composition-based stats.
 Identities = 161/448 (35%), Positives = 255/448 (56%), Gaps = 18/448 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + +F++++GCQMN++DS R+  +  S G  +     DAD+++  TC +RE A  ++Y   
Sbjct: 10  KTYFIRTFGCQMNLHDSERVSGLLDSLGCLQALDPKDADIVIFMTCCVREAADTRLY--- 66

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           G+  + K+      G  +V V GC+AQ +GE +L     V+V+ G  +   + +LL  A 
Sbjct: 67  GQCSSCKSLPASPSGRRVVAVGGCIAQRDGEGLLTNLDNVDVIFGTHSIAHVGDLLADAF 126

Query: 145 F-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             G R V       ++ +  +  +  ++R+    A++ I  GC+ FC++C+VPY RG E 
Sbjct: 127 ADGDRHVRV-----EEIDSGAATEMPWHRETAYHAWVPIMTGCNNFCSYCIVPYVRGREK 181

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR + ++VDE   L+  GV  +TLLGQNVN+  G+   G    F++LL  + E  G+ R+
Sbjct: 182 SRPMEEIVDEVTGLVRQGVRSVTLLGQNVNS-YGRDH-GSAPRFAELLRRVGE-TGVERI 238

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
            +T+SHP+D+    I A  ++  +MP LHL VQSGS RILK MNR++T  +Y  ++DR+R
Sbjct: 239 YFTSSHPKDLLPETIDAIAEVPAVMPQLHLAVQSGSSRILKLMNRKYTREQYLDLVDRVR 298

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              PDIA+++D IVGFPGET++DF  T+ LVD+  +AQAF+F YS R GTP + + +   
Sbjct: 299 DRIPDIALTTDIIVGFPGETEEDFEQTVTLVDEAKFAQAFTFIYSKRAGTPAAEIDDPTP 358

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLVGRSPWLQSVVLNS 442
            +V  +R   L + +      +N   +G  + +LIE   K+    L G+SPW Q+V    
Sbjct: 359 RSVIQQRFDRLVRHVETTAFDYNQRFLGTTVPMLIEGTSKKNDAVLQGKSPWNQTVHCPV 418

Query: 443 KNH-----NIGDIIKVRITDVKISTLYG 465
                    IG I+ VR+   +   L G
Sbjct: 419 PEGMDARQLIGKILDVRVDAARTWYLSG 446


>gi|269837050|ref|YP_003319278.1| RNA modification enzyme, MiaB family [Sphaerobacter thermophilus
           DSM 20745]
 gi|269786313|gb|ACZ38456.1| RNA modification enzyme, MiaB family [Sphaerobacter thermophilus
           DSM 20745]
          Length = 460

 Score =  409 bits (1052), Expect = e-112,   Method: Composition-based stats.
 Identities = 148/461 (32%), Positives = 239/461 (51%), Gaps = 20/461 (4%)

Query: 9   GVAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLN 68
            +A        Q    +R+ + + GCQMN  +S +   M    GY + +  ++AD+I++N
Sbjct: 7   RLARAPEPAGVQAA--KRYCIWTIGCQMNEAESAKAAAMLSQAGYLQTHLEEEADVIIVN 64

Query: 69  TCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVV 128
           +C +R+ A +KV   LG +  LK    +   D+ + + GC+   + + +  R P V++  
Sbjct: 65  SCVVRQAAEDKVAGKLGSLARLK----RVRPDVRIALTGCMVTGQEQALAERFPHVDLFY 120

Query: 129 GPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
           GP  + RL E+          VDTD +    F +             VTAF+ I  GC+ 
Sbjct: 121 GPSQFERLVEIAPELAH----VDTDLAELPHFYQPDAA------GSDVTAFVPIIYGCNF 170

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS 248
            C++C+VPY RG E SR +++V+ E  +L + GV E+TLLGQ VNA  G  L G     +
Sbjct: 171 VCSYCIVPYRRGRERSRPMAEVIAEVERLAERGVKEVTLLGQTVNA-YGHDLPGSP-DLA 228

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
           DLL +++EI G+ R+R+ TSHP+ MSD +++A   L     +++LPVQ+G D +L+ M R
Sbjct: 229 DLLTAVNEIPGIERIRFLTSHPKYMSDRIVQAVATLPKACEHINLPVQAGDDEVLRRMRR 288

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
            +T   YR+ I  IR   P + +S+D IVGFPGET++ F+ T+DL+ ++   +     YS
Sbjct: 289 TYTVDFYRERIAYIRETIPGVTVSTDIIVGFPGETEEQFQRTLDLLAELRLDKVHVAMYS 348

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL 428
           PR  T  +   + +  + K  R   ++K   +     N   +G   E+L++   K  G+ 
Sbjct: 349 PRPRTLSARWEDDIPWDEKRRRHQAVEKLQAQILGERNRGYLGATFEILVDGMAK--GRW 406

Query: 429 VGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
            GR+     V   +     G  + VRIT+     L GE V 
Sbjct: 407 RGRTRGNDLVFFEAPGDWKGKFVDVRITEASPWYLLGEPVA 447


>gi|225389074|ref|ZP_03758798.1| hypothetical protein CLOSTASPAR_02820 [Clostridium asparagiforme
           DSM 15981]
 gi|225044863|gb|EEG55109.1| hypothetical protein CLOSTASPAR_02820 [Clostridium asparagiforme
           DSM 15981]
          Length = 451

 Score =  409 bits (1052), Expect = e-112,   Method: Composition-based stats.
 Identities = 141/448 (31%), Positives = 227/448 (50%), Gaps = 13/448 (2%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + F  S GC  N+ D+ +M  +   +GY   +   +AD I++NTC     A E+  + + 
Sbjct: 5   KLFCVSLGCDKNLVDTEKMLGLLNREGYAFTDDEGEADAILINTCCFIGDAKEESVNTIL 64

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +  LK      G    +VVAGC+AQ   EEIL   P V+ ++G  +   +  +L     
Sbjct: 65  EMARLKEE----GRCRALVVAGCLAQRYKEEILEEIPEVDGILGTTSCDEIVNVLNGIL- 119

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G+          D  E  +  +       G  A L I EGCDK CT+C++PY RG   S 
Sbjct: 120 GREKPAPVSCFHDLAEPPTGGENRVVTTGGYYAHLKIAEGCDKRCTYCIIPYLRGSFRSV 179

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            + Q+V EA +L + GV E+ L+ Q      GK L GEK     LL+ L+++ G+  +R 
Sbjct: 180 PMEQLVREAGQLAEQGVKELILVAQETT-LYGKDLYGEKA-LPKLLHELAKVPGIQWIRL 237

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
              +P +++D LI+A    + +  YL +P+Q  SD IL+ M RR    + R++I R+R  
Sbjct: 238 QYCYPEEITDELIEAIRTEEKVCHYLDIPIQHASDGILRRMGRRTNQAQLREMIARLRRE 297

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            PDIA+ +  I GFPGET +D    M  VD++ + +   F YS    TP  +  +QV + 
Sbjct: 298 IPDIALRTTLISGFPGETQEDHEELMAFVDEMEFERLGVFAYSAEEDTPAYSFPDQVPQE 357

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVLN 441
           VK +R   + +  +E     ++A VG+++ VLIE    ++   VGR+    P +  ++  
Sbjct: 358 VKEDRRDEIMQLQQEIAFEKSEAMVGRVLTVLIEGKVVDEPAYVGRTYMDAPSVDGLIFV 417

Query: 442 SKNHNI--GDIIKVRITDVKISTLYGEL 467
           + +  +  GD ++VR+T      L GE+
Sbjct: 418 NADVELMSGDFVRVRVTGSAEYDLIGEI 445


>gi|297626490|ref|YP_003688253.1| 2-methylthioadenine synthetase MiaB protein [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
 gi|296922255|emb|CBL56827.1| 2-methylthioadenine synthetase MiaB protein [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
          Length = 504

 Score =  409 bits (1052), Expect = e-112,   Method: Composition-based stats.
 Identities = 162/471 (34%), Positives = 252/471 (53%), Gaps = 27/471 (5%)

Query: 12  HMVSQIVDQCIVPQRFF-VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD-----DADLI 65
              +  VD    P R + V +YGCQMN +DS R+  +    GY  + + +      AD++
Sbjct: 4   PEYTPAVDAPSAPARSYRVITYGCQMNAHDSERIAGLLDQAGYVALPAHEHTEIGPADVV 63

Query: 66  VLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVN 125
           V NTC +RE A  ++Y  LGR+   K    KE   + + V GC+AQ + + I+ ++P V+
Sbjct: 64  VFNTCAVRENADNRLYGNLGRMATFK----KEHPGMQIAVGGCMAQKDRDLIVSKAPWVD 119

Query: 126 VVVGPQTYYRLPELLERARFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQE 184
           VV G      LP LLERAR  +   V+   +++     L       +R+    A+++I  
Sbjct: 120 VVFGTNNVGSLPILLERARIEQASQVEITEALQTFPSNLPT-----HRELDYAAWVSISV 174

Query: 185 GCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK 244
           GC+  CT+C+VP  RG E  R    ++ E + L+D GV EITLLGQNVN +  +   G++
Sbjct: 175 GCNNTCTYCIVPALRGKETDRRPGDILAEIQMLVDQGVQEITLLGQNVNTYGVEF--GDR 232

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304
             F+ LL +  +I GL R+R+T+ HP   +D +I+A  +   +M  LH+P+QSGSD +L+
Sbjct: 233 GAFAKLLRACGDITGLERVRFTSPHPAAFTDDVIEAMAETPNVMHQLHMPLQSGSDHVLR 292

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
           +M R + +  +  I++R+R+  PD AIS+D IVGFPGETD+DF  T+  V +  +  A++
Sbjct: 293 AMRRSYRSERFHGILERVRAAMPDAAISTDIIVGFPGETDEDFEQTLQAVRRSRFTNAYT 352

Query: 365 FKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGK 423
           F+YS R GTP   M  QV  +V  ER   L     E     N   +G  +EV+     G+
Sbjct: 353 FQYSIRPGTPAGEMANQVPHDVVQERYERLVAVQDEISWEENKLLLGANVEVMFTTGDGR 412

Query: 424 EK---GKLVGRSPWLQSVVL-----NSKNHNIGDIIKVRITDVKISTLYGE 466
           +     ++ GR+   + V +      +     GDI +V IT      L  +
Sbjct: 413 KDQATDRISGRARDNRLVHVRVPSDPADRPRPGDIGEVTITYAAPHHLVAD 463


>gi|255505363|ref|ZP_05345671.3| RNA modification enzyme, MiaB family [Bryantella formatexigens DSM
           14469]
 gi|255268564|gb|EET61769.1| RNA modification enzyme, MiaB family [Bryantella formatexigens DSM
           14469]
          Length = 446

 Score =  409 bits (1051), Expect = e-112,   Method: Composition-based stats.
 Identities = 138/449 (30%), Positives = 219/449 (48%), Gaps = 18/449 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC  N+ DS  M  +   +GY   +  + AD+I++NTC     A E+    + 
Sbjct: 3   KILFISLGCDKNLVDSEEMLGLLARRGYTMTDDEEQADIIIINTCCFINDAKEESVQTIL 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +        K G    ++V GC+AQ   EEI      V+ V+G  +Y  + E +ER   
Sbjct: 63  EMAE----HRKNGTCRALIVTGCLAQRYREEITTEISEVDAVLGTSSYDEIVETVERVLA 118

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYN-RKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
           G++     Y    + +RL   DGG      G  A L I EGCDK CT+C++P  RG   S
Sbjct: 119 GQK-----YLHFQELDRLPAPDGGRVVTTGGHYAHLKIAEGCDKHCTYCIIPQIRGNFRS 173

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
             + +++ +A +L   GV E+ L+ Q      G  L G+K +   LL  L +IKG+  +R
Sbjct: 174 VPMERLLAQAEELAGGGVRELILVAQETT-LYGVDLYGKK-SLHLLLQELCKIKGIRWIR 231

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
               +P ++ + LI+       +  YL LP+Q  S+RILK M RR +  +  +II ++R 
Sbjct: 232 ILYCYPEEIYEELIETIRTEKKICHYLDLPIQHASNRILKRMGRRTSREQLAEIIHKLRR 291

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             PDIA+ +  I GFPGET +D    M  VD++ + +   F YS   GTP + M +Q+ +
Sbjct: 292 EIPDIALRTTLISGFPGETQEDHEELMAFVDEMEFDRLGVFPYSQEEGTPAAAMPDQIPQ 351

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVL 440
            +K  R   L +  +E     NDA  G+ +  ++E +  ++   V R+    P +   + 
Sbjct: 352 EIKEARRDELMELQQEIVFEKNDAMCGRTVTAMVEGYLTDENVYVARTYADAPGVDGYLF 411

Query: 441 NSKNHNI--GDIIKVRITDVKISTLYGEL 467
                 +  GD ++VRIT      L GE+
Sbjct: 412 IETQETLMSGDFVRVRITGALEYDLIGEI 440


>gi|197120521|ref|YP_002132472.1| MiaB-like tRNA modifying enzyme YliG [Anaeromyxobacter sp. K]
 gi|238065287|sp|B4UKQ2|RIMO_ANASK RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|196170370|gb|ACG71343.1| MiaB-like tRNA modifying enzyme YliG [Anaeromyxobacter sp. K]
          Length = 469

 Score =  409 bits (1051), Expect = e-112,   Method: Composition-based stats.
 Identities = 141/450 (31%), Positives = 223/450 (49%), Gaps = 18/450 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R ++ + GC  N  DS  M       GY  V     A++IV+NTC   E A E+    + 
Sbjct: 4   RVYMHTLGCPKNRVDSEVMLGTLAEAGYRLVQDPAQAEVIVVNTCGFIESAKEESVEAIV 63

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            + + K    +EG    +VV GC+ Q   EE+ R  P V+  +G   Y  +  ++  A+ 
Sbjct: 64  ELADQK----REGRCRKLVVTGCLVQRHAEELARELPEVDHFLGTGAYQDVARIVSDAQA 119

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            + VV       D     S      N     TA+L I EGCD  C FC++P  RG + SR
Sbjct: 120 KRLVV------PDPDFVHSSATPRVNSLPSHTAYLKIAEGCDNACAFCIIPKLRGGQRSR 173

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            +  +V EA  L   G  E++L+ Q++ A  G+ L G K     LL  L+++ G+  +R 
Sbjct: 174 PIDDLVAEAAALAAQGTVELSLVAQDLTA-YGQDLPG-KVRLHHLLPELAKVDGIRWIRL 231

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
             ++PRD+ D L+ A  D   ++ YL +P+Q  SDR+L++M R   +   R ++ R+RS 
Sbjct: 232 HYAYPRDVPDALVAAIADEPRIVKYLDMPLQHSSDRLLRAMKRGRDSVFLRDLLARLRSR 291

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P +A+ +  IVG PGET+ DF   +  V++  + +   F+YS   GTP + M +QV + 
Sbjct: 292 IPGLALRTALIVGLPGETEADFEDLLRFVEEQRFERLGVFEYSAEEGTPAAEMADQVPDA 351

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GR----SPWLQSV-V 439
           VK ER   +    +    +   A +G+ +EVL+E   +E   L+ GR    +P +  +  
Sbjct: 352 VKRERRDRIMAVQQAISRAHQQAMIGRRVEVLVEGRAEETEHLLAGRHAQQAPEIDGLTY 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELVV 469
           +N      G+I+ V ITD     L G +V 
Sbjct: 412 INDGVAYPGEIVTVEITDAAEYDLVGRVVA 441


>gi|332975771|gb|EGK12652.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Desmospora sp. 8437]
          Length = 448

 Score =  409 bits (1051), Expect = e-112,   Method: Composition-based stats.
 Identities = 144/447 (32%), Positives = 230/447 (51%), Gaps = 18/447 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
                + GC++N Y++  M  +F  QGYE+V+    AD+ V+NTC +      K    + 
Sbjct: 3   TVAFHTLGCKVNAYETEAMWKLFQRQGYEKVDFEQKADVYVINTCTVTNTGDRKSRQMIR 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R        +++  + +V V GC AQ    EI+   P V+VVVG Q   +L + +E  R 
Sbjct: 63  RA-------VRKNPEAVVAVTGCYAQTSSAEIMD-IPGVDVVVGTQGRDKLLQYIEEHRQ 114

Query: 146 GKRVVDTDYSVEDKFERLSI-VDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            ++ V+   ++    E   + V     R R   A L IQEGC+ FCTFC++P+ RG+  S
Sbjct: 115 TRQPVNAVKNIMKTREFEEMDVPSFSERTR---ASLKIQEGCNNFCTFCIIPWARGLLRS 171

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R    V+ +AR+L+D G  EI L G +     G G D E    +DLL+ L +++GL R+R
Sbjct: 172 RKPESVLRQARQLVDAGYKEIVLTGIHTG---GYGEDFEDYKLADLLWDLDKVEGLKRIR 228

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
            ++     + D +I      D +  +LH+P+Q+G D +LK M RR+T  EYR+ I+ +  
Sbjct: 229 ISSIEASQIDDRVIDVLNKSDKMCRHLHIPLQAGDDVVLKRMRRRYTVDEYRRKIEHLHR 288

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             P +AI+SD IVGFPGET++ F     L++++G+++   F YS R GTP + M +QV  
Sbjct: 289 AMPGVAITSDVIVGFPGETEEQFENGYRLIEELGFSELHVFPYSTRTGTPAARMTDQVPA 348

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK---GKLVGRSPWLQSVVLN 441
            VK +R+  L        +++     G+++EV+ E   K+    G L G S     +   
Sbjct: 349 EVKQDRVARLIALSDRLALTYASKYAGEVLEVIPEGPLKDDPDSGWLAGYSDNYLQIAFP 408

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                +G + +VR+         G  V
Sbjct: 409 GNEELVGQVCRVRLDQPGSEYSQGTFV 435


>gi|308174331|ref|YP_003921036.1| 30S ribosomal protein S12 methylthiotransferase [Bacillus
           amyloliquefaciens DSM 7]
 gi|307607195|emb|CBI43566.1| ribosomal protein S12 methylthiotransferase [Bacillus
           amyloliquefaciens DSM 7]
          Length = 451

 Score =  409 bits (1051), Expect = e-112,   Method: Composition-based stats.
 Identities = 137/449 (30%), Positives = 232/449 (51%), Gaps = 21/449 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
                + GC++N Y++  +  +F   GYER      AD+ V+NTC +     +K    + 
Sbjct: 3   TVAFHTLGCKVNHYETEAIWQLFKDAGYERKEFEQTADVYVINTCTVTNTGDKKSRQVIR 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R        I++  D ++ V GC AQ    EI+   P V++VVG Q   ++   +E+ R 
Sbjct: 63  RA-------IRQNPDGVICVTGCYAQTSPAEIMA-IPGVDIVVGTQDREKMLGYIEQYRE 114

Query: 146 GKRVVDTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            ++ ++   ++     FE L +            A L IQEGC+ FCTFC++P+ RG+  
Sbjct: 115 ERQPINGVGNIMKARVFEELDVP----AFTDRTRASLKIQEGCNNFCTFCIIPWARGLLR 170

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS-EIKGLVR 262
           SR   +V+ +A++L+D G  EI L G +     G G D +   F+ LL  L   ++GL R
Sbjct: 171 SRDPEEVIKQAQQLVDAGYKEIVLTGIHTG---GYGEDMKDYNFAKLLRELDTRVEGLKR 227

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R ++     ++D +I+     D ++ +LH+P+QSGS+ +LK M R++T   +   ++++
Sbjct: 228 IRISSIEASQITDEVIEVLDASDKIVRHLHIPIQSGSNTVLKRMRRKYTMEFFADRLNKL 287

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           +   P +A++SD IVGFPGET+++F  T   + +  +++   F YS R GTP + M +QV
Sbjct: 288 KEALPGLAVTSDVIVGFPGETEEEFMETYRFIKEHKFSELHVFPYSKRTGTPAARMEDQV 347

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK---HGKEKGKLVGRSPWLQSVV 439
           DENVK ER+  L     +    +     G+++E++ E+      E G  VG +     VV
Sbjct: 348 DENVKNERVHKLIALSDQLAKEYASDYEGEVLEIIPEETFKESDEDGMFVGYTDNYMKVV 407

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG ++KV+I         G+ V
Sbjct: 408 FKGTEDLIGKLVKVKIQKAGYPYNEGQFV 436


>gi|226324718|ref|ZP_03800236.1| hypothetical protein COPCOM_02504 [Coprococcus comes ATCC 27758]
 gi|225207166|gb|EEG89520.1| hypothetical protein COPCOM_02504 [Coprococcus comes ATCC 27758]
          Length = 446

 Score =  409 bits (1051), Expect = e-112,   Method: Composition-based stats.
 Identities = 141/450 (31%), Positives = 226/450 (50%), Gaps = 14/450 (3%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
               S GC  N+ DS  M  +    G++ V+    AD+I++NTC     A E+    +  
Sbjct: 3   ILFISLGCDKNLVDSEVMLGILAKDGHQMVDDETMADVIIINTCCFIHDAKEESIQNILE 62

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           + +LK    K G    ++V GC+AQ   EEI++  P V+ V+G  +Y  +  +++     
Sbjct: 63  MADLK----KTGRLKALIVTGCLAQRYKEEIIQEIPEVDAVLGTTSYEEIAHVIDGVLSD 118

Query: 147 KRVVDTDYSVEDK-FERLSIVDGGYN-RKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
             +   D  +  K  + L + D        G  A+L I EGCDK CT+C++P  RG   S
Sbjct: 119 SPMERGDVRLTMKDVDYLPVTDTHRMVTTGGHFAYLKIAEGCDKHCTYCIIPKVRGDFRS 178

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
             +  +++EA+ L D GV E+ L+ Q      G  L GEK     LL +L +I GL  +R
Sbjct: 179 VPMEHLLEEAQNLADGGVKELILVAQETTM-YGTDLYGEK-RLPQLLRALCKISGLRWIR 236

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
               +P +++D LI+   +   +  YL LP+Q  SD ILK M RR +  +  + I+++R 
Sbjct: 237 ILYCYPEEITDELIQVIKEEPKICHYLDLPIQHASDGILKRMGRRTSRAQLIETIEKLRR 296

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             PDIA+ +  I GFPGET +     MD VD++ + +   F YSP   TP ++M +Q+ E
Sbjct: 297 EIPDIALRTTLITGFPGETQEQHEELMDFVDQMEFDRLGVFTYSPEEDTPAASMPDQIPE 356

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVL 440
            VK ER   L +  ++      +  +G+ + V+IE    ++   VGR+    P +  ++ 
Sbjct: 357 EVKEERQAELMELQQDIVFDQAEDRIGEELLVMIEGKVADENAYVGRTYRDAPNVDGLIF 416

Query: 441 --NSKNHNIGDIIKVRITDVKISTLYGELV 468
              S+    GD  KV++T      L GEL+
Sbjct: 417 VNTSEELMSGDFAKVKVTGSADYDLIGELL 446


>gi|303233246|ref|ZP_07319918.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Atopobium vaginae
           PB189-T1-4]
 gi|302480636|gb|EFL43724.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Atopobium vaginae
           PB189-T1-4]
          Length = 459

 Score =  409 bits (1051), Expect = e-112,   Method: Composition-based stats.
 Identities = 173/458 (37%), Positives = 263/458 (57%), Gaps = 14/458 (3%)

Query: 17  IVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA 76
           + D  +V + + +K++GCQMN++DS R+  +    G   V ++++AD++V  TC +REKA
Sbjct: 6   VQDNKLVGKTYLIKTFGCQMNLHDSERVAGLLDDCGCNEVQTVEEADIVVFMTCSVREKA 65

Query: 77  AEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL 136
              +Y   G + NL        G  ++ V GC+AQ +G  + +  P V+VV G      +
Sbjct: 66  DTHLY---GAVSNLVVVPAPPCGKRVIAVGGCIAQRDGARLKKHIPNVDVVFGTSALASV 122

Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
           PELL  A           +VE    R    +    R++   A++ I  GC+ FCTFC+VP
Sbjct: 123 PELLCEAFESDGSEVFVDTVEKN--RGFSCELPSKREQYFHAWVPIMTGCNNFCTFCIVP 180

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256
             RG E SR   +VV E  +L+D+GV E+TLLGQNVN+  G+ L G K  FS+LL  + +
Sbjct: 181 LVRGRERSRVFERVVAEVARLVDDGVREVTLLGQNVNS-YGRDLYG-KPRFSELLREVGK 238

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
             G+ R+R+T+S+P+D+S   I+A  +   +MP LHL VQSGS+RIL++M+R +   +Y 
Sbjct: 239 -TGIERIRFTSSNPKDLSHDTIRAMAETPNVMPQLHLAVQSGSNRILRAMHRAYNREKYL 297

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
            +I  ++   P IA+S+D IVGFPGET++DF  TM LVD++GYA A++F YS R GTP +
Sbjct: 298 SVIAELKEAIPGIALSTDIIVGFPGETEEDFLQTMSLVDEVGYASAYTFIYSKRPGTPAA 357

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWL 435
            +++     V  ER   L K++ E   S N   +   +  L+E   K+    LVG SP  
Sbjct: 358 KIVDTTPHEVIQERFERLTKRIEELAYSANQVDLHAHVTALVEGTSKKNPSVLVGHSPKN 417

Query: 436 QSVVLN-----SKNHNIGDIIKVRITDVKISTLYGELV 468
           Q+V+ +        H IG + +V I++ K   L G LV
Sbjct: 418 QTVLFDLPEGTKPEHFIGQMCEVEISEAKTWYLRGSLV 455


>gi|269215580|ref|ZP_06159434.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Slackia exigua ATCC
           700122]
 gi|269131067|gb|EEZ62142.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Slackia exigua ATCC
           700122]
          Length = 454

 Score =  409 bits (1051), Expect = e-112,   Method: Composition-based stats.
 Identities = 167/459 (36%), Positives = 262/459 (57%), Gaps = 15/459 (3%)

Query: 17  IVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA 76
            ++  +  + F+  +YGCQMN +DS R+  +  S G   V++++++++++  TC +RE+A
Sbjct: 2   TMNDILTNKTFYTFTYGCQMNEHDSERIAGLLESCGCVPVSTLEESEIVIFMTCCVRERA 61

Query: 77  AEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL 136
             ++   +  I+ +           +V + GC+ Q +G  +      V+VV G Q   RL
Sbjct: 62  DIRLMGQVSTIKGVPLPEGSALDKRIVCIGGCIGQRDGIALTETLDNVDVVFGTQNIERL 121

Query: 137 PELLERAR-FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
           P L+      G   V+ +   +         D   +R++  +A+L I  GCD FCTFC+V
Sbjct: 122 PYLITGVLSQGGHFVEIEQDSDSF-----STDLPSDREKPWSAWLPITVGCDNFCTFCIV 176

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
           PY RG E SR++  VV  A   +  GV EITLLGQNVN+  G+ L G    F+D+L +++
Sbjct: 177 PYVRGRERSRAIEDVVMNAEAYVAEGVKEITLLGQNVNS-YGRDLYGSP-RFADVLKAVA 234

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
              G+ RLR+ TSHP+D++D +I A G+LD LMP LHLPVQSGSDRIL+ MNR + +  Y
Sbjct: 235 A-TGVERLRFATSHPKDLTDEVIAAFGELDNLMPALHLPVQSGSDRILEDMNRTYDSAHY 293

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
             ++ ++R+  PDIA+S+D IVGFPGET++DF+AT DL++ +GY+Q F+F YS R GTP 
Sbjct: 294 LGLVRKLRASCPDIALSTDVIVGFPGETEEDFQATYDLIESVGYSQVFTFIYSRREGTPA 353

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPW 434
           ++M +    +V   R   L + ++ + +  N   +G+ ++VL E    ++   LVG SP 
Sbjct: 354 ADMFDDTPRDVIQRRFDRLVELVQRKALEQNRRFLGRDLDVLFEGPSRRDPSMLVGHSPH 413

Query: 435 LQSVVLNSKNHN-----IGDIIKVRITDVKISTLYGELV 468
             +V             +G    V I + K   L G LV
Sbjct: 414 NVTVHAPLPAGMDASAFVGRTCLVHIDEAKTWYLSGTLV 452


>gi|229817424|ref|ZP_04447706.1| hypothetical protein BIFANG_02686 [Bifidobacterium angulatum DSM
           20098]
 gi|229785213|gb|EEP21327.1| hypothetical protein BIFANG_02686 [Bifidobacterium angulatum DSM
           20098]
          Length = 484

 Score =  409 bits (1051), Expect = e-112,   Method: Composition-based stats.
 Identities = 161/453 (35%), Positives = 248/453 (54%), Gaps = 23/453 (5%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD----DADLIVLNTCHIREKAAEKVYS 82
           F+V + GCQMNV+DS R+  +    GY           D DLIV+NTC +RE AAE++Y 
Sbjct: 31  FYVHTLGCQMNVHDSERIAGVLEQAGYVPATEEQYLDHDIDLIVMNTCAVRENAAERMYG 90

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +G   N+K    +E  +L + V GC+AQ + E+I +++P V+ V G +    LP+LL++
Sbjct: 91  TIGLWANMK----RERPNLQIAVGGCMAQLDREKIAKKAPWVDAVFGTKNIGSLPQLLDQ 146

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           AR             + F      D    R   V++++ I  GC+  CTFC+VP TRG E
Sbjct: 147 ARIQGHAQVKVQEDLNYFPSQLPTD----RASKVSSWVAISVGCNNTCTFCIVPTTRGKE 202

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
             R    ++ E R+ +D G  EITLLGQNVN++ G G+ G++  FS LL +  +I+GL R
Sbjct: 203 HDRRPGDILAEIRQCVDEGAKEITLLGQNVNSF-GYGI-GDRFAFSKLLRACGDIEGLER 260

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+T+ HP   +D +I A  +   +M  LH P+QSGSDRIL++M R + + ++  I+ +I
Sbjct: 261 VRFTSPHPAAFTDDVIAAMAETPNVMHQLHFPLQSGSDRILRAMRRSYRSAKFLDILRKI 320

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R   PD  IS+D IVGFPGET++DF+ T+ +V++  ++ AF+F YSPR GTP + M EQ+
Sbjct: 321 RQAMPDAQISTDIIVGFPGETEEDFQETLRVVEEARFSSAFTFIYSPRPGTPAAQM-EQL 379

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKG---KLVGRSPWLQSV 438
             +V  +R   L                G+ +EV++    GK+     ++ GR      V
Sbjct: 380 PHDVVQDRFDRLVALQERITEENLKTFEGRDVEVMVTGTPGKKDSATHRVTGRERTGVLV 439

Query: 439 VL----NSKNHNIGDIIKVRITDVKISTLYGEL 467
            +          +GD +   +T      L  + 
Sbjct: 440 HVGVPEGEPTPQVGDFVTATVTHAGRHNLIADP 472


>gi|193211917|ref|YP_001997870.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Chlorobaculum
           parvum NCIB 8327]
 gi|229890476|sp|B3QR49|MIAB_CHLP8 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|193085394|gb|ACF10670.1| RNA modification enzyme, MiaB family [Chlorobaculum parvum NCIB
           8327]
          Length = 443

 Score =  409 bits (1051), Expect = e-112,   Method: Composition-based stats.
 Identities = 156/450 (34%), Positives = 242/450 (53%), Gaps = 15/450 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           +   FF+ ++GCQMN+ D+  +  +    G+        AD+++LNTC +R  A ++  +
Sbjct: 1   MSPTFFIHTFGCQMNMADTEIVTAILVEGGFAPAEDEGTADMVLLNTCAVRANAVDRAGN 60

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            L  ++ +K    +    L+V + GCV Q E E++    P V+ +VGP  Y  L  ++  
Sbjct: 61  VLSHLKGMK----RRRKGLVVGLLGCVPQYEREQLFGDFPFVDFIVGPDNYRDLCGIVRS 116

Query: 143 ARFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
            R G+ R    DY  ++ +  +  +     R   V+ FL +  GC+  C FCVVP TRG 
Sbjct: 117 VREGEQRRAFIDYDQQETYAGIDPI-----RANRVSTFLPVMRGCNNHCAFCVVPVTRGR 171

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E S +  +V+ E   L   G  E+TLLGQNVN+W       +   F+ LL  +S     +
Sbjct: 172 ERSVAFDRVIAEVAALEQAGYREVTLLGQNVNSWCDAD---KSLDFAGLLEGVSHAAPSM 228

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHP+D+S+ L++  G+   L  ++HLPVQSGS R+L  M R HT  EY   I  
Sbjct: 229 RIRFTTSHPKDISESLVRVIGERPNLCKHIHLPVQSGSSRMLDLMKRGHTREEYLDKIAM 288

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN-MLE 380
           IR + P +AI++D I GF  ET+ D R T+ L++ +GY  AF F YS R GT  +  + +
Sbjct: 289 IRELVPGVAITTDLIAGFCTETEVDHRETLSLMEAVGYDTAFMFYYSVRPGTWAARNLPD 348

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439
            V E VK  RL  +               +G+++EVL E   K    +L+GR+   ++VV
Sbjct: 349 DVPEAVKKARLQEIIDLQTAMSRELYQREIGKVVEVLAEAESKRSASQLMGRTSENRAVV 408

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELVV 469
            + ++   GD++ VRIT    +TL GE +V
Sbjct: 409 FSREHFMPGDLVPVRITAATSATLSGEALV 438


>gi|220915232|ref|YP_002490536.1| MiaB-like tRNA modifying enzyme YliG [Anaeromyxobacter dehalogenans
           2CP-1]
 gi|219953086|gb|ACL63470.1| MiaB-like tRNA modifying enzyme YliG [Anaeromyxobacter dehalogenans
           2CP-1]
          Length = 469

 Score =  409 bits (1051), Expect = e-112,   Method: Composition-based stats.
 Identities = 140/450 (31%), Positives = 223/450 (49%), Gaps = 18/450 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R ++ + GC  N  DS  M       GY  V     A++IV+NTC   E A E+    + 
Sbjct: 4   RVYMHTLGCPKNRVDSEVMLGTLAEAGYRLVQDPAQAEVIVVNTCGFIESAKEESVEAIV 63

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            + + K    +EG    +VV GC+ Q   EE+ R  P V+  +G   Y  +  ++  A+ 
Sbjct: 64  ELADQK----REGRCRKLVVTGCLVQRHAEELARELPEVDHFLGTGAYQDVARIVSDAQA 119

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            + VV       D     S      N     TA+L I EGCD  C FC++P  RG + SR
Sbjct: 120 KRLVV------PDPDFVHSSATPRVNSLPSHTAYLKIAEGCDNACAFCIIPKLRGGQRSR 173

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            +  +V EA  L   G  E++L+ Q++ A  G+ L G K     LL  L+++ G+  +R 
Sbjct: 174 PIDDLVAEAAALAAQGTVELSLVAQDLTA-YGQDLPG-KVRLHHLLPELAKVDGIRWIRL 231

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
             ++PRD+ D L+ A  D   ++ YL +P+Q  SDR+L++M R   +   R ++ R+RS 
Sbjct: 232 HYAYPRDVPDALVAAIADEPKIVKYLDMPLQHSSDRLLRAMKRGRDSVFLRDLLARLRSR 291

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P +A+ +  IVG PGET+ DF   +  V++  + +   F+YS   GTP + M +QV + 
Sbjct: 292 IPGLALRTALIVGLPGETEADFEDLLRFVEEQRFERLGVFEYSAEEGTPAAEMADQVPDA 351

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GR----SPWLQSV-V 439
           +K ER   +    +    +   A +G+ +EVL+E   +E   L+ GR    +P +  +  
Sbjct: 352 LKRERRDRIMAVQQAISRAHQQAMIGRRVEVLVEGRAEETEHLLAGRHAQQAPEIDGLTY 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELVV 469
           +N      G+I+ V ITD     L G +V 
Sbjct: 412 INDGVAYPGEIVTVEITDAAEYDLVGRVVA 441


>gi|320094018|ref|ZP_08025843.1| tRNA-I(6)A37 thiotransferase [Actinomyces sp. oral taxon 178 str.
           F0338]
 gi|319979062|gb|EFW10580.1| tRNA-I(6)A37 thiotransferase [Actinomyces sp. oral taxon 178 str.
           F0338]
          Length = 508

 Score =  409 bits (1051), Expect = e-112,   Method: Composition-based stats.
 Identities = 158/472 (33%), Positives = 253/472 (53%), Gaps = 35/472 (7%)

Query: 19  DQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDA------------DLIV 66
           +    P+ + V++ GCQMN +DS RM  +    G   V+ + +A            D++V
Sbjct: 5   NPPAPPRTYAVRTLGCQMNEHDSERMAGLLEQAGLLPVDQVPEAAARATDAGDMGADVVV 64

Query: 67  LNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNV 126
           +NTC +RE AA +++  LG++  +K  R      + + V GC+AQ   E I+ R+P V+ 
Sbjct: 65  INTCSVRENAATRLFGNLGQLAAVKRGR----PGMQIAVGGCLAQQMREGIVERAPWVDA 120

Query: 127 VVGPQTYYRLPELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEG 185
           V G      LP LL RA   +   V+ + S++     L        R+    A+++I  G
Sbjct: 121 VFGTHNIDVLPALLRRAEHNRAAAVEIEESLKVFPSTLPT-----RRESVYAAWVSISVG 175

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C+  CTFC+VP  RG E  R   +++ E   +   G  E+TLLGQNVN+  G G  GE+ 
Sbjct: 176 CNNTCTFCIVPRLRGKERDRRPGEILAEVEAVASQGAIEVTLLGQNVNS-YGVGF-GERR 233

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
            F+DLL ++  ++G+ R+R+T+ HP   +D +I A      +MP LH+P+QSGSDR+L+ 
Sbjct: 234 AFADLLRAVGGVEGIERVRFTSPHPAAFTDDVIDAMATTPTVMPSLHMPLQSGSDRVLRQ 293

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           M R +    +  I++R+R+  P  AI++D IVGFPGET++DF  T+ +V++  +A AF+F
Sbjct: 294 MRRSYRRERFMGILERVRAAVPAAAITTDIIVGFPGETEEDFAQTLQVVEEARFASAFTF 353

Query: 366 KYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKE 424
            YSPR GTP ++  +QV  +V  ER   L           N A VG  +EVL+ E  G++
Sbjct: 354 LYSPRPGTPAADREDQVPADVALERYKRLVALQERICAEDNAALVGNGVEVLVSEGDGRK 413

Query: 425 KG---KLVGRSPWLQSVVL-------NSKNHNIGDIIKVRITDVKISTLYGE 466
            G   ++ GR+   + V +        +     GD+++  +T      L  +
Sbjct: 414 DGATRRITGRARDNRLVHVGLPASLSGADRPRPGDMVRASVTHGAPHHLIAD 465


>gi|331090885|ref|ZP_08339729.1| ribosomal protein S12 methylthiotransferase rimO [Lachnospiraceae
           bacterium 2_1_46FAA]
 gi|330405531|gb|EGG85062.1| ribosomal protein S12 methylthiotransferase rimO [Lachnospiraceae
           bacterium 2_1_46FAA]
          Length = 440

 Score =  409 bits (1051), Expect = e-112,   Method: Composition-based stats.
 Identities = 141/448 (31%), Positives = 228/448 (50%), Gaps = 16/448 (3%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
               S GC  N+ D+  M  +  S+G++ VN   +AD+IV+NTC     A E+    +  
Sbjct: 3   ILFISLGCDKNLVDTEVMLGLLASKGHQMVNDEMEADVIVINTCCFIHDAKEESIQNILE 62

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           +  LK    KEG    ++V GC+AQ   EEI+   P V+ V+G  +Y ++ E ++ A  G
Sbjct: 63  MAELK----KEGRLKALIVTGCLAQRYKEEIIEEIPEVDAVLGTTSYDKILEAIDEALEG 118

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           +  V+    + D      +         G  A+L I EGCDK CT+C++P  RG   S  
Sbjct: 119 RHCVE----MTDIDALPLVQSNRLVTTGGHFAYLKIAEGCDKHCTYCIIPKIRGNFRSVP 174

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
           + +++ EA  L + GV E+ L+ Q      GK + GEK +   LL  L ++ G+  +R  
Sbjct: 175 MERLLKEAEGLAEQGVKELILVAQETT-LYGKDIYGEK-SLHKLLKELCKVSGIQWIRIL 232

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
             +P +++D LI+   +   +  YL LP+Q  SD ILK M RR +  + ++II ++R   
Sbjct: 233 YCYPEEITDELIQVMKEEKKICHYLDLPIQHASDEILKRMGRRTSKAQLKEIIGKLREEI 292

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           PDI + +  I GFPGET +     M+ VD++ + +   F YSP   TP + M  Q++E V
Sbjct: 293 PDITLRTTLITGFPGETKEQHEELMEFVDEMEFDRLGVFTYSPEEDTPAALMDNQIEEEV 352

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVLNS 442
           K +R   L +  ++      +  +G+ + VLIE    ++   VGR+    P +  ++  +
Sbjct: 353 KEDRQAELMELQQDIAFDLAEDMIGKEVLVLIEGKVADENAYVGRTYKDAPNVDGLIFVN 412

Query: 443 KNHNI--GDIIKVRITDVKISTLYGELV 468
               +  GD  KVR+T      L GE+V
Sbjct: 413 TEEELMSGDFAKVRVTGALEYDLIGEIV 440


>gi|326430372|gb|EGD75942.1| CDK5 regulatory subunit-associated protein 1 [Salpingoeca sp. ATCC
           50818]
          Length = 632

 Score =  408 bits (1050), Expect = e-112,   Method: Composition-based stats.
 Identities = 159/478 (33%), Positives = 250/478 (52%), Gaps = 41/478 (8%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +R  +++YGCQMNV DS     +    G E+   +++AD+++L TC IRE A  KV++ L
Sbjct: 123 KRVLIQTYGCQMNVNDSELAWSILKEAGCEKATDVEEADIVLLVTCAIRENAETKVWTKL 182

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            ++ ++K  R K   DL + V GC+A+    +++  S  V++V GP  Y  LP +L RA 
Sbjct: 183 DQLSHIKRKRPKH-KDLQIGVLGCMAERLKHKLVEESKCVDIVAGPDAYRELPTMLSRAA 241

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G   V+   S+E+ +  L+ V          +AF++IQ GCD  C++C+VP+TRG E S
Sbjct: 242 AGDTQVNVLLSLEETYADLTPVRHN---PNSPSAFVSIQRGCDNMCSYCIVPFTRGRERS 298

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAW-----------------------RGKGLD 241
           R +S ++ E ++L + GV E+TLLGQNVN++                         +  D
Sbjct: 299 RPVSAILREVQQLSEQGVKEVTLLGQNVNSYLDHSQISVATAAPVVNTPGFKTIYKRKKD 358

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
           G   TF+ LL  ++++   +R+R+T+ HP+D  D ++    D   +   +HLP QSGSD 
Sbjct: 359 G--ITFAQLLEQVAQVDPEMRIRFTSPHPKDFPDEVLHVIRDHHNVCNQIHLPAQSGSDA 416

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
           +L  M R +T   Y +++DRI  + PD+ +SSDFI GF GET+ D   T+ L++ + Y  
Sbjct: 417 VLDRMRRGYTHAAYCELVDRIHDLIPDVTLSSDFISGFCGETEADHLDTLRLLEYVKYDM 476

Query: 362 AFSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
           A+ F YS R  T     + + V E+VK  RL  L +   +   + N    G +  VLIE 
Sbjct: 477 AYLFAYSLREKTHAHRRLQDDVPEDVKLARLNDLIQLFHKHAKNNNAQRHGSVQTVLIES 536

Query: 421 HGKE-KGKLVGRSPWLQSVVLNS----------KNHNIGDIIKVRITDVKISTLYGEL 467
             K  + +LVGRS     V++                 GD + V + D    +L G  
Sbjct: 537 ASKRSEDELVGRSDGNLKVIVPKTFTDARTAKQTTLRTGDYVLVEVNDSTSMSLRGTP 594


>gi|126652827|ref|ZP_01724972.1| Fe-S oxidoreductase [Bacillus sp. B14905]
 gi|126590363|gb|EAZ84483.1| Fe-S oxidoreductase [Bacillus sp. B14905]
          Length = 449

 Score =  408 bits (1050), Expect = e-112,   Method: Composition-based stats.
 Identities = 136/451 (30%), Positives = 237/451 (52%), Gaps = 22/451 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +     + GC++N Y++  +  +F  +GY+R      AD+ V+NTC +     +K    +
Sbjct: 7   KIVSFHTLGCKVNHYETEAIWQLFKDEGYDRTEFDQQADVYVINTCTVTNTGDKKSRQVI 66

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R        I++  D ++ V GC AQ    EI+   P V++VVG Q   +L   +++ R
Sbjct: 67  RRA-------IRQNPDAVICVTGCYAQTSPAEIMA-IPGVDIVVGTQDRTKLLGYIDQYR 118

Query: 145 FGKRVVDTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
             ++ ++   ++     +E L +            A L IQEGC+ FCTFC++P+ RG+ 
Sbjct: 119 AERQPINAVRNIMKNRVYEELDVP----AFTDRTRASLKIQEGCNNFCTFCIIPWARGLM 174

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKGLV 261
            SR   +V+ +A++L+D G  EI L G +     G G D +    + LL  L + +KGL 
Sbjct: 175 RSRDPQEVLHQAQQLVDAGYLEIVLTGIHTG---GYGQDLKDYNLAQLLRDLEANVKGLK 231

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           RLR ++     ++D +I    +  +++ +LH+P+QSGSD +LK M R++T   + + + +
Sbjct: 232 RLRISSIEASQLTDEVIDVLRESKIVVNHLHIPIQSGSDTVLKRMRRKYTMEFFGERLTK 291

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +    PD+A++SD IVGFPGET+++F  T + +    +++   F +SPR GTP + M +Q
Sbjct: 292 LHEALPDLAVTSDVIVGFPGETEEEFMDTYNFIRDHKFSELHVFPFSPRTGTPAARMEDQ 351

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKH----GKEKGKLVGRSPWLQS 437
           +DE++K ER+  L     +    +      Q++EV+ E+      +E+G L G +     
Sbjct: 352 IDEDIKNERVHRLISLNDQLAKEYASRFEDQVLEVIPEEFVHDGSEEEGLLTGYTDNYLK 411

Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           VV       IG ++KV+IT        G+ V
Sbjct: 412 VVFEGPESLIGQLVKVKITQAGYPHSQGQFV 442


>gi|119596726|gb|EAW76320.1| CDK5 regulatory subunit associated protein 1, isoform CRA_c [Homo
           sapiens]
          Length = 592

 Score =  408 bits (1050), Expect = e-112,   Method: Composition-based stats.
 Identities = 155/502 (30%), Positives = 256/502 (50%), Gaps = 54/502 (10%)

Query: 17  IVDQCI-VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREK 75
           ++D+ +   ++ ++++YGCQMNV D+     +    GY R +++ +AD+I+L TC IREK
Sbjct: 91  MMDELLGRQRKVYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCSIREK 150

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135
           A + +++ L +++ LK  R +    L + + GC+A+   EEIL R  +V+++ GP  Y  
Sbjct: 151 AEQTIWNRLHQLKALKTRRPRSRVPLRIGILGCMAERLKEEILNREKMVDILAGPDAYRD 210

Query: 136 LPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
           LP LL  A  G++  +   S+++ +  +  V          +AF++I  GCD  C++C+V
Sbjct: 211 LPRLLAVAESGQQAANVLLSLDETYADVMPVQTS---ASATSAFVSIMRGCDNMCSYCIV 267

Query: 196 PYTRGIEISRSLSQVVDEARKLID--------------NGVCEITLLGQNVNAWRG---- 237
           P+TRG E SR ++ +++E +KL +               G+ E+TLLGQNVN++R     
Sbjct: 268 PFTRGRERSRPIASILEEVKKLSEQVFLPPRPPKVLGLQGLKEVTLLGQNVNSFRDNSEV 327

Query: 238 -----------KGLDGEKCT------FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKA 280
                      +G      T      F+ LL  +S +   +R+R+T+ HP+D  D +++ 
Sbjct: 328 QFNSAVPTNLSRGFTTNYKTKQGGLRFAHLLDQVSRVDPEMRIRFTSPHPKDFPDEVLQL 387

Query: 281 HGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFP 340
             + D +   +HLP QSGS R+L++M R ++   Y +++  IR   P +++SSDFI GF 
Sbjct: 388 IHERDNICKQIHLPAQSGSSRVLEAMRRGYSREAYVELVHHIRESIPGVSLSSDFIAGFC 447

Query: 341 GETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLR 399
           GET++D   T+ L+ ++ Y   F F YS R  T     + + V E VK  RL  L    R
Sbjct: 448 GETEEDHVQTVSLLREVQYNMGFLFAYSMRQKTRAYHRLKDDVPEEVKLRRLEELITIFR 507

Query: 400 EQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVLNSKN------------HN 446
           E+    N   VG    VL+E   K     L GR+     V+                   
Sbjct: 508 EEATKANQTSVGCTQLVLVEGLSKRSATDLCGRNDGNLKVIFPDAEMEDVNNPGLRVRAQ 567

Query: 447 IGDIIKVRITDVKISTLYGELV 468
            GD + V IT     TL G ++
Sbjct: 568 PGDYVLV-ITSASSQTLRGHVL 588


>gi|153002973|ref|YP_001377298.1| MiaB-like tRNA modifying protein YliG [Anaeromyxobacter sp.
           Fw109-5]
 gi|238065286|sp|A7H6G8|RIMO_ANADF RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|152026546|gb|ABS24314.1| MiaB-like tRNA modifying enzyme YliG [Anaeromyxobacter sp. Fw109-5]
          Length = 470

 Score =  408 bits (1050), Expect = e-112,   Method: Composition-based stats.
 Identities = 141/450 (31%), Positives = 219/450 (48%), Gaps = 18/450 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R ++ + GC  N  DS  M       GY        AD+IV+NTC   E A E+    + 
Sbjct: 5   RVYLHTLGCPKNRVDSEVMLGTLTGAGYRLERDPAQADVIVVNTCGFIESAKEESVDAIV 64

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +  +K      G    +VV GC+ Q   EE+    P V+  +G   Y  +  ++  A+ 
Sbjct: 65  ELAGMKQE----GRCKKLVVTGCLVQRHAEELSAELPEVDHFLGTGAYAEIARVVSDAQA 120

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            + VV       D     S      N     TA+L I EGCD  C FC++P  RG + SR
Sbjct: 121 KRLVV------PDPDFVHSAATPRVNSLPSHTAYLKISEGCDNACAFCIIPKLRGAQRSR 174

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            +  VV EA  L   G  E++L+ Q++ A  G  L G K     LL  L ++ G+  LR 
Sbjct: 175 PVDDVVAEAAALAAQGTVELSLVAQDLTA-YGYDLPG-KVRLHHLLPELCKVDGIRWLRL 232

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
             ++PRD+ D L++       ++ YL +P+Q  SDR+L+SM R   +   R+++ R+R+ 
Sbjct: 233 HYAYPRDVPDALVEVIAREPKIVKYLDMPLQHSSDRLLRSMKRGRDSVFLRELLARLRAR 292

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P IA+ +  IVG PGET++DF   +  V++  + +   F++SP  GTP ++M EQV + 
Sbjct: 293 VPGIALRTSLIVGLPGETEEDFEDLVRFVEEQRFERLGVFEFSPEDGTPAADMAEQVPDV 352

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GR----SPWLQSV-V 439
           VK  R   +    +E       A VG+ +EVL+E   +E   L+ GR    +P +  +  
Sbjct: 353 VKRARRDRIMALQQEISREHQRAMVGRRLEVLVEGRAEETEHLLAGRHAQQAPEIDGITY 412

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELVV 469
           +N      G+++ V ITD     L G +V 
Sbjct: 413 VNDGVAYPGELVTVEITDASEYDLVGHVVA 442


>gi|167462198|ref|ZP_02327287.1| RNA modification enzyme, MiaB family protein [Paenibacillus larvae
           subsp. larvae BRL-230010]
          Length = 449

 Score =  408 bits (1050), Expect = e-112,   Method: Composition-based stats.
 Identities = 140/451 (31%), Positives = 239/451 (52%), Gaps = 21/451 (4%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           +P      + GC++N YD+  +  +F ++GYE+ +    AD+ V+NTC +     +K   
Sbjct: 1   MP-TVAFHTLGCKVNFYDTEAIWQLFKAEGYEQTDFEKTADVYVINTCTVTNTGDKKSRQ 59

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            + R        ++   D ++ V GC AQ    EI+   P V++V+G Q   ++   +++
Sbjct: 60  MIRRA-------VRRNPDAIIAVTGCYAQTSPAEIM-EIPGVDLVIGTQDREKIVPYVKQ 111

Query: 143 ARFGKRVVDTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
               ++ ++   ++     FE L + D          AFL IQEGC+ FCTFC++P++RG
Sbjct: 112 IESERQPINAVRNIMKTRQFEELDVPD----FADRTRAFLKIQEGCNNFCTFCIIPWSRG 167

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
           +  SR    VV +A  L+D G  EI L G +     G G D E  + + LL+ L ++ GL
Sbjct: 168 LMRSRDPKSVVQQAHMLVDAGYKEIVLTGIHTG---GYGEDMEDYSLAKLLWDLDKVDGL 224

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R ++     ++D +++     D +  +LH+P+Q+G DR+LK M R++T  EY + I+
Sbjct: 225 ERIRISSIEASQITDEVLEVLNASDKMCRHLHIPLQAGDDRVLKRMRRKYTTEEYGRKIE 284

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
            I    P +AI++D IVGFPGET++ F  +   ++++ Y++   F YS R GTP + M +
Sbjct: 285 LIHKAMPGVAITTDVIVGFPGETEEMFENSYRFMEQMKYSEMHVFPYSKRTGTPAARMED 344

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK---EKGKLVGRSPWLQS 437
           Q+DE +K  R+  L       Q+ +     GQ +EV+ E+  K     G ++G S     
Sbjct: 345 QIDEEIKNARVHRLIDLSERMQLDYARQHEGQALEVIPEREYKGAEGSGLVMGYSDNYIQ 404

Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           +V       IG I +V++T+  I+   G+LV
Sbjct: 405 LVFEGSEQLIGQICRVKLTEPGINESRGQLV 435


>gi|299535792|ref|ZP_07049113.1| hypothetical protein BFZC1_07203 [Lysinibacillus fusiformis ZC1]
 gi|298728992|gb|EFI69546.1| hypothetical protein BFZC1_07203 [Lysinibacillus fusiformis ZC1]
          Length = 444

 Score =  408 bits (1050), Expect = e-112,   Method: Composition-based stats.
 Identities = 135/450 (30%), Positives = 238/450 (52%), Gaps = 22/450 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    + GC++N Y++  +  +F  +GY+R      AD+ V+NTC +     +K    + 
Sbjct: 3   KVAFHTLGCKVNHYETEAIWQLFKEEGYDRTEFDHQADVYVINTCTVTNTGDKKSRQVIR 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R        +++  D ++ V GC AQ    EI+   P V++VVG Q   +L   +E+ R 
Sbjct: 63  RA-------VRQNPDAVICVTGCYAQTSPAEIMA-IPGVDIVVGTQDRTKLLGYIEQYRA 114

Query: 146 GKRVVDTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            ++ ++   ++     +E L +            A L IQEGC+ FCTFC++P+ RG+  
Sbjct: 115 ERQPINAVRNIMKNRVYEELDVP----AFTDRTRASLKIQEGCNNFCTFCIIPWARGLMR 170

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKGLVR 262
           SR   +V+ +A++L+D G  EI L G +     G G D +    + LL  L + +KGL R
Sbjct: 171 SRDPQEVLHQAQQLVDAGYLEIVLTGIHTG---GYGQDLKDYNLAQLLRDLEANVKGLKR 227

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LR ++     ++D +I+   +  +++ +LH+P+QSGSD +LK M R++T   + + + ++
Sbjct: 228 LRISSIEASQLTDEVIEVLRESKIVVNHLHIPIQSGSDTVLKRMRRKYTMEFFGERLTKL 287

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
               PD+A++SD IVGFPGET+++F  T + +    +++   F +SPR GTP + M +Q+
Sbjct: 288 HEALPDLAVTSDVIVGFPGETEEEFMETYNFIRDHKFSELHVFPFSPRTGTPAARMEDQI 347

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKH----GKEKGKLVGRSPWLQSV 438
           DE++K ER+  L     +    +      Q++EV+ E+      +E+G L G +     +
Sbjct: 348 DEDIKNERVHRLISLNDQLAKEYASRFEDQVLEVIPEEFVHDGSEEEGLLTGYTDNYLKI 407

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           V       IG ++KV+IT        G+ V
Sbjct: 408 VFEGPESLIGQLVKVKITQAGYPHSQGQFV 437


>gi|228476133|ref|ZP_04060841.1| conserved hypothetical protein [Staphylococcus hominis SK119]
 gi|314936303|ref|ZP_07843650.1| Fe-S oxidoreductase [Staphylococcus hominis subsp. hominis C80]
 gi|228269956|gb|EEK11436.1| conserved hypothetical protein [Staphylococcus hominis SK119]
 gi|313654922|gb|EFS18667.1| Fe-S oxidoreductase [Staphylococcus hominis subsp. hominis C80]
          Length = 448

 Score =  408 bits (1050), Expect = e-112,   Method: Composition-based stats.
 Identities = 140/445 (31%), Positives = 235/445 (52%), Gaps = 17/445 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
                + GC++N Y++  +  +F    YERV+   +AD+ V+NTC +     +K    + 
Sbjct: 3   TVAFHTLGCKVNHYETEAIWQLFKDANYERVDFETNADVYVINTCTVTNTGDKKSRQVIR 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R        I+   D +V V GC AQ    EI+   P V+VVVG Q  ++L   +++ R 
Sbjct: 63  RA-------IRRNPDAVVCVTGCYAQTSSAEIM-EIPGVDVVVGTQDRHKLLSYIDQFRE 114

Query: 146 GKRVVDT--DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            ++ ++   +      +E L +            A L IQEGC+ FCTFC++P+ RG+  
Sbjct: 115 ERQPINGVGNIMKNRTYEELDVP----YFTDRTRASLKIQEGCNNFCTFCIIPWARGLMR 170

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR   +VV++A +L+ +G  EI L G +     G G D +    + LL  L EI GL R+
Sbjct: 171 SRDPEKVVEQATQLVQSGYKEIVLTGIHTG---GYGQDLKNYNLAQLLRDLEEIDGLERI 227

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R ++     ++D +I    + + ++ +LH+P+QSGSD +LK M R++T   + + + ++ 
Sbjct: 228 RISSIEASQLTDEVIDVLKNSNKVVRHLHVPLQSGSDTVLKRMRRKYTMEHFSERLTKLH 287

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              PD+A++SD IVGFPGET+++F+ T D + K  +++   F YS R+GTP + M +Q+D
Sbjct: 288 DALPDLAVTSDVIVGFPGETEEEFQETYDFIVKHKFSELHVFPYSQRIGTPAARMGDQID 347

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
           E++K ER+  L     +    +      +++EV+ E+ G+ K  LVG +     V     
Sbjct: 348 ESIKNERVHKLIALSDQLAKEYASKFENEVLEVIPEEVGETKNTLVGYADNYMKVEFEGS 407

Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468
              IG+I+KV+I         G  V
Sbjct: 408 EDLIGEIVKVKINKADYPINIGSAV 432


>gi|239623774|ref|ZP_04666805.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239521805|gb|EEQ61671.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 448

 Score =  408 bits (1049), Expect = e-112,   Method: Composition-based stats.
 Identities = 139/448 (31%), Positives = 228/448 (50%), Gaps = 13/448 (2%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + F  S GC  N+ D+ +M  +    G+   +   +AD+I++NTC     A E+  + + 
Sbjct: 2   KLFCVSLGCDKNLVDTEKMLGLLGGTGFTFTDDEMEADVILVNTCCFIGDAKEESVNTIL 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +  LK      G    ++V GC+AQ   +EIL   P V+ ++G  +Y  +  ++++   
Sbjct: 62  DMARLKEE----GACRALIVTGCLAQRYKQEILDEIPEVDAILGTTSYEDVAGIVKQVLE 117

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           GK +     S  D  E      G      G  AFL I EGCDK CT+C++PY RG   S 
Sbjct: 118 GKGITHLT-SFHDLGELPDTQAGRVVTTGGYYAFLKIAEGCDKRCTYCIIPYLRGPYRSV 176

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            + Q+++EAR+L   GV E+ L+ Q      GK + G K +   LL+ L++I G+  +R 
Sbjct: 177 PMEQLLEEARQLASGGVKELILVAQETT-LYGKDIYGGK-SLPKLLHELAQIPGIQWIRI 234

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
              +P +++D LI+A    + +  YL +P+Q  S+RILK M RR    E  + I ++R  
Sbjct: 235 QYCYPEEITDELIEAIRSEEKVCHYLDIPIQHASNRILKRMGRRTNREELTERIAKLRKE 294

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            PDIA+ +  I GFPGET  D    MD V+++ + +   F YS    TP  +  +QV + 
Sbjct: 295 IPDIALRTTMISGFPGETQADHEELMDFVNEMEFERLGVFAYSAEEDTPAYSYPDQVPQE 354

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVLN 441
           VK ER   + +  ++      +  VG+I+ VLIE    ++   VGR+    P +  ++  
Sbjct: 355 VKEERRDEIMELQQDIAFGHCEDMVGRILTVLIEGKVVDEPVYVGRTYMDAPGVDGLIFV 414

Query: 442 SKNHNI--GDIIKVRITDVKISTLYGEL 467
           +    +  GD ++V++T      L GE+
Sbjct: 415 NAEMELMSGDFVRVKVTGAAEYDLIGEV 442


>gi|219123728|ref|XP_002182171.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217406132|gb|EEC46072.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 453

 Score =  408 bits (1049), Expect = e-112,   Method: Composition-based stats.
 Identities = 167/449 (37%), Positives = 256/449 (57%), Gaps = 12/449 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQ-GYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           Q + +++ GCQMNV DS R+  +  ++      +   DADL++ NTC IR+ A +K+Y  
Sbjct: 2   QTYHIQTSGCQMNVADSERLAGVLRNELNMRVADQSQDADLVLFNTCSIRDHAEQKLYDA 61

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LG     K    K    + ++V GCVAQ EGE +LRR P ++VV+GPQ    L  +LE  
Sbjct: 62  LGPYAAQKRKGQK---QMALIVTGCVAQQEGEALLRRVPEIDVVLGPQYVPFLKNVLESV 118

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRG--VTAFLTIQEGCDKFCTFCVVPYTRGI 201
             G+++V T   +  +    S  D  +   RG  V A++ I  GC++ CT+CVVP TRG+
Sbjct: 119 SLGQQIVATAPMLLQEDVSGSSADWNHKPVRGHDVRAWVNIIHGCNEHCTYCVVPGTRGM 178

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS-EIK-G 259
           E SR++  ++ E   L   G  E+TLLGQN++A+    +   K TF+DLL  L+  I   
Sbjct: 179 EQSRTMEAILQEIIDLGRRGYKEVTLLGQNIDAYGRDMVP--KRTFADLLTFLNFRIPQD 236

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
            +R+RY TSHPR  SD +I A  +LD +    H+P Q+G D +L+ M R +T   Y +II
Sbjct: 237 DMRIRYVTSHPRYFSDRVIDAVANLDKVCECFHMPFQAGDDEVLRRMRRGYTYDSYMRII 296

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            +IR   PD AI  D IVGFPGETD+ F  T+ L++++ +    +F YSPR  T  +   
Sbjct: 297 RKIRDKAPDAAICGDVIVGFPGETDEGFEKTLQLMEEVHFDNLNTFAYSPRPNTEAATWD 356

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSPWLQSV 438
           +QV ++VKAERL  +Q    E  +  +   VG+++ VL+E  + +   +++GR+   + V
Sbjct: 357 DQVPDSVKAERLQRVQTLAAEHGLERSMRYVGRVVPVLVEDGNPRNPAQVMGRTRQGRQV 416

Query: 439 VLNSK-NHNIGDIIKVRITDVKISTLYGE 466
             +       G+I+ V IT+ +  +L GE
Sbjct: 417 YFDGDLAALRGEIVDVHITEARTWSLMGE 445


>gi|150390422|ref|YP_001320471.1| MiaB-like tRNA modifying enzyme YliG [Alkaliphilus metalliredigens
           QYMF]
 gi|238065283|sp|A6TRJ4|RIMO_ALKMQ RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|149950284|gb|ABR48812.1| MiaB-like tRNA modifying enzyme YliG [Alkaliphilus metalliredigens
           QYMF]
          Length = 446

 Score =  408 bits (1049), Expect = e-111,   Method: Composition-based stats.
 Identities = 138/450 (30%), Positives = 235/450 (52%), Gaps = 17/450 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           +P   +V+S GC  N+ D+  M  +    GY+  N+   AD+I++NTC   E A E+  +
Sbjct: 1   MPLSVYVESLGCSKNLIDAEVMLGILNQYGYKLTNNEVKADVIIVNTCGFIEAAKEESIN 60

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +  +      ++K+    L++VAGC+ +   +++L   P V+ +VG   Y+ + +++ +
Sbjct: 61  KIIEL-----GQLKKDKLKLLIVAGCLGERYQKDLLEELPEVDAIVGTGGYHEIVKVIHQ 115

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
              G+R+V+         E L  +          +A++ I +GCD +CT+C++P  RG  
Sbjct: 116 TMKGQRIVEIGDINRPYDETLPRIQ----TTASHSAYIKISDGCDNYCTYCIIPKLRGKY 171

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR +  ++ EA+ L +NGV EI L+ Q+     G  L  E    S LL  LSE++G+  
Sbjct: 172 RSRKMENIIQEAQTLANNGVKEIILIAQDTT-RYGIDLYDE-YRLSALLDKLSEVEGIQW 229

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R    +P  ++D LI    + D +  Y+ +P+Q  S +ILK MNRR +  E   +I+++
Sbjct: 230 IRILYCYPEMITDELIATIKNNDKVCKYIDIPIQHCSTKILKLMNRRTSKEEIVSLIEKL 289

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           +   P+I I +  IVGFPGE+++DF      ++ I + +   F YS   GTP + + EQV
Sbjct: 290 KKNVPNIVIRTSIIVGFPGESEEDFNELKAFIEDIKFDRLGVFTYSQEEGTPAAQLAEQV 349

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSV 438
              +K  R   L +  +   ++ N   +GQ IEVLIE+   EK + +GRS    P +  +
Sbjct: 350 PSELKESRQKILMELQQRISLNKNRLYIGQSIEVLIEEEIAEKTEYLGRSQGDAPEIDGI 409

Query: 439 VLNSKNHN--IGDIIKVRITDVKISTLYGE 466
           V         +G I+KV+I +     L GE
Sbjct: 410 VYVKSTVPLCVGQIVKVKIENALEYDLMGE 439


>gi|313837164|gb|EFS74878.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes
           HL037PA2]
 gi|314927814|gb|EFS91645.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes
           HL044PA1]
 gi|314971937|gb|EFT16035.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes
           HL037PA3]
          Length = 490

 Score =  408 bits (1049), Expect = e-111,   Method: Composition-based stats.
 Identities = 163/466 (34%), Positives = 260/466 (55%), Gaps = 24/466 (5%)

Query: 13  MVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYE---RVNSMDDADLIVLNT 69
           M +  +     P  + V +YGCQMNV+DS R+  +    GY    R +++  AD++V NT
Sbjct: 1   MPNNTLQHAEAP-TYRVVTYGCQMNVHDSERIAGLLEEAGYVPDPRTDTLAPADVVVFNT 59

Query: 70  CHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG 129
           C +RE A  ++Y  LG + ++K++       + + V GC+AQ + + ++ R+P V+VV G
Sbjct: 60  CAVRENADNRLYGTLGHMASVKSA----NPGMQLAVGGCMAQKDKDAVVARAPWVDVVFG 115

Query: 130 PQTYYRLPELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
                 LP LL+RAR      V+ + S+      L        R    +A+++I  GC+ 
Sbjct: 116 THNVGSLPALLKRARHNATAQVEIEESLITFPSNLPT-----RRDSAYSAWVSISVGCNN 170

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS 248
            CTFC+VP  RG E  R   +++ E R L+D GV E+TLLGQNVN++  +   G++  F+
Sbjct: 171 TCTFCIVPQLRGRETDRRPGEILSEIRALVDEGVQEVTLLGQNVNSYGVQF--GDRGAFA 228

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
            LL +   I GL R+R+T+ HP   +D +I+A  +   +MP LH+P+QSGSD +L+ M R
Sbjct: 229 KLLRACGNIDGLERVRFTSPHPAAFTDDVIEAMAETPNVMPSLHMPLQSGSDEVLRRMRR 288

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
            + + ++  I+DR+R   PD AI++D IVGFPGETD DF  TM +V +  ++ AF+F+YS
Sbjct: 289 SYRSTKFLGILDRVREAIPDAAITTDIIVGFPGETDKDFAETMRVVAESKFSAAFTFQYS 348

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKG- 426
            R  TP   M +QV + +  ER   L + + +     N+A VG+ +EV+  E  G++   
Sbjct: 349 IRPHTPAGVMADQVPKPIVQERYERLVELVDDIAWQENEAQVGRTVEVMFAEGEGRKDEA 408

Query: 427 --KLVGRSPWLQSVVL---NSKN-HNIGDIIKVRITDVKISTLYGE 466
             ++ GR+   + V +      +    GDI +V IT      L  +
Sbjct: 409 THRVTGRACDNRLVHVSLNPGDDVPRPGDIGEVVITSGHPHHLVAD 454


>gi|306822499|ref|ZP_07455877.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bifidobacterium dentium
           ATCC 27679]
 gi|304554044|gb|EFM41953.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bifidobacterium dentium
           ATCC 27679]
          Length = 503

 Score =  408 bits (1049), Expect = e-111,   Method: Composition-based stats.
 Identities = 167/473 (35%), Positives = 249/473 (52%), Gaps = 25/473 (5%)

Query: 9   GVAHMVSQIVDQCIVPQR--FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD----DA 62
             + +    VD   V  R  F+V + GCQMNV+DS R+  +  S GY           D 
Sbjct: 30  RASKLAEPTVDTAPVRGRGVFYVHTLGCQMNVHDSERIAGVLESAGYVPATEEQYMDHDV 89

Query: 63  DLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSP 122
           DLIV+NTC +RE AAE++Y  +G    +K    +E  +L + V GC+AQ + E I  ++P
Sbjct: 90  DLIVMNTCAVRENAAERMYGTIGLWAEMK----RERPNLQIAVGGCMAQLDRERIAEKAP 145

Query: 123 IVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTI 182
            V+ V G +    LP+LL++AR             + F      D    R   V++++ I
Sbjct: 146 WVDAVFGTKNIGSLPQLLDQARVQGHAQVKVEEELNYFPSQLPTD----RASRVSSWVAI 201

Query: 183 QEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG 242
             GC+  CTFC+VP TRG E  R    ++ E R+ +D G  EITLLGQNVN++ G G+ G
Sbjct: 202 SVGCNNTCTFCIVPTTRGKEHDRRPGDILAEIRQCVDEGAKEITLLGQNVNSF-GYGI-G 259

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
           ++  FS LL +  EI+GL R+R+T+ HP   +D +I A  +   +M  LH P+QSGSDRI
Sbjct: 260 DRFAFSKLLRACGEIEGLERVRFTSPHPAAFTDDVIAAMAETPNVMHQLHFPLQSGSDRI 319

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           L++M R + + ++  I+ +IR   PD  IS+D IVGFPGET++DF+ TM +V++  ++ A
Sbjct: 320 LRAMRRSYRSAKFLDILRKIREAMPDAQISTDIIVGFPGETEEDFQETMRVVEEARFSSA 379

Query: 363 FSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422
           F+F YSPR GTP + M EQV  +V   R   L                G+ +EV++    
Sbjct: 380 FTFIYSPRPGTPAAEM-EQVPHDVVQNRFERLVALQERITEENLKIFEGRDVEVMVTGAS 438

Query: 423 KEKG----KLVGRSPWLQSVVLNSKN----HNIGDIIKVRITDVKISTLYGEL 467
             K     ++ GR      V +          +GD +   +T      L  + 
Sbjct: 439 GRKDAATHRVTGRERTGVLVHVGIPEGEPMPQVGDFVTATVTHAGRHNLIADP 491


>gi|160933105|ref|ZP_02080494.1| hypothetical protein CLOLEP_01948 [Clostridium leptum DSM 753]
 gi|156868179|gb|EDO61551.1| hypothetical protein CLOLEP_01948 [Clostridium leptum DSM 753]
          Length = 459

 Score =  408 bits (1048), Expect = e-111,   Method: Composition-based stats.
 Identities = 153/439 (34%), Positives = 237/439 (53%), Gaps = 13/439 (2%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V++YGCQ NV D  +++ M    G+      ++AD I+ NTC IRE A ++++  +G ++
Sbjct: 29  VRTYGCQQNVSDGEKIKGMLQQMGFGFTEDQEEADFILFNTCAIREHAEDRIFGNVGALK 88

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
            LK    +    L++ + GC+ + E   E I +  P V++V G  +    P+L+     G
Sbjct: 89  YLK----RRNPSLIIALCGCMMEQEHVVERIRKSYPFVSLVFGTHSLSSFPQLVYETLTG 144

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
            + V      +   E + +      R     A+L +  GCD FC++CVVPY RG E SR 
Sbjct: 145 AKRVFQRGGEDTIDENIPV-----RRDGRFKAWLPVMYGCDNFCSYCVVPYVRGRERSRE 199

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
              V+ EAR+LI+ G  +ITLLGQNVN+  GK L  E   F+ LL  +S+++G   LR+ 
Sbjct: 200 PEAVLKEARQLIEGGYKDITLLGQNVNS-YGKNLP-EPVNFAKLLKEISDMEGDYWLRFM 257

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
           TSHP+D +  LI        +  +LHLP QSG++R+LK MNRR+T  +Y +II   R   
Sbjct: 258 TSHPKDCTKELIDVMASSGHIAKHLHLPFQSGNNRVLKEMNRRYTREQYLEIIRYAREKM 317

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           P ++I+SD IVGFPGET ++F+ T+ L+ ++G+   ++F +SPR GTP + M + V    
Sbjct: 318 PGLSITSDVIVGFPGETYEEFQDTLSLIREVGFTALYTFIFSPRKGTPAAGMSDPVSHKE 377

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHN 446
           K      L K   E  V    + VG+ +  L+E+   + G L  R+    +V +      
Sbjct: 378 KTRWFAELLKVQEEISVRRCASMVGKTVRGLVEEEASKPGVLNARTEENVTVEIPGGPEM 437

Query: 447 IGDIIKVRITDVKISTLYG 465
           IG    + +TD     L G
Sbjct: 438 IGSFRNILVTDAGNWVLKG 456


>gi|262184302|ref|ZP_06043723.1| 2-methylthioadenine synthetase [Corynebacterium aurimucosum ATCC
           700975]
          Length = 487

 Score =  408 bits (1048), Expect = e-111,   Method: Composition-based stats.
 Identities = 152/448 (33%), Positives = 232/448 (51%), Gaps = 25/448 (5%)

Query: 36  MNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRI 95
           MNV+DS R+  +    GY    +  + DLIV NTC +RE A +++Y  LG ++  K +  
Sbjct: 1   MNVHDSERISGLLEEAGYSAAPNGTEPDLIVFNTCAVRENADKRLYGTLGALKKTKENH- 59

Query: 96  KEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYS 155
                + + V GC+AQ + + +L  +P V+ V G      LP LLERAR           
Sbjct: 60  ---PGMQIAVGGCLAQKDKDTVLDHAPWVDAVFGTHNMAALPALLERARHNDEAQVEIVD 116

Query: 156 VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEAR 215
             + F  +        R+     ++++  GC+  CTFC+VP  RG E  R    ++ E +
Sbjct: 117 ALEAFPSVLPA----KRESAYAGWVSVSVGCNNTCTFCIVPSLRGKEEDRRPGDILAEVQ 172

Query: 216 KLIDNGVCEITLLGQNVNAWRGKGLDGEKCT----FSDLLYSLSEIKGLVRLRYTTSHPR 271
            L+D GV E+TLLGQNVNA+     D +       FS LL  + +I+GL RLR+T+ HP 
Sbjct: 173 ALVDQGVSEVTLLGQNVNAYGVNFADPDLPRDRFAFSKLLREVGKIEGLERLRFTSPHPA 232

Query: 272 DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAI 331
           + +  +I A  +   + P LH+P+QSGSD++LK M R +   ++  I+D +R   P  AI
Sbjct: 233 EFTSDVIDAMAETPAVCPQLHMPLQSGSDKVLKDMRRSYRTKKFLGILDEVREKMPHAAI 292

Query: 332 SSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERL 391
           ++D IVGFPGET++DF AT+++V +  +A AF+F+YSPR GTP + M  Q+ + V  ER 
Sbjct: 293 TTDIIVGFPGETEEDFEATLEVVRRARFASAFTFQYSPRPGTPAAEMENQIPKEVVQERF 352

Query: 392 LCLQKKLREQQVSFNDACVGQIIEVLI--EK--HGKEKGKLVGRSPWLQSVVL------- 440
             L       Q   N   VG  +E+L+  E      E  +L GR+   + V         
Sbjct: 353 ERLVALQDSIQAEENAKLVGTDVELLVQAEGGRKSAETHRLTGRARDGRLVHFAPVDPAG 412

Query: 441 --NSKNHNIGDIIKVRITDVKISTLYGE 466
              S     GD++   +T+     L  +
Sbjct: 413 KDISAEIRPGDVVHTTVTEAGSFFLVAD 440


>gi|52081091|ref|YP_079882.1| hypothetical protein BL02101 [Bacillus licheniformis ATCC 14580]
 gi|52786470|ref|YP_092299.1| YqeV [Bacillus licheniformis ATCC 14580]
 gi|319644951|ref|ZP_07999184.1| hypothetical protein HMPREF1012_00217 [Bacillus sp. BT1B_CT2]
 gi|52004302|gb|AAU24244.1| conserved hypothetical protein [Bacillus licheniformis ATCC 14580]
 gi|52348972|gb|AAU41606.1| YqeV [Bacillus licheniformis ATCC 14580]
 gi|317392760|gb|EFV73554.1| hypothetical protein HMPREF1012_00217 [Bacillus sp. BT1B_CT2]
          Length = 451

 Score =  408 bits (1048), Expect = e-111,   Method: Composition-based stats.
 Identities = 138/449 (30%), Positives = 233/449 (51%), Gaps = 21/449 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
                + GC++N Y++  +  +F   GYER      AD+ V+NTC +     +K    + 
Sbjct: 3   TVAFHTLGCKVNHYETEAIWQLFKEAGYERKEFESSADVYVINTCTVTNTGDKKSRQVIR 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R        I++  D ++ V GC AQ    EI+   P V++VVG Q   ++   +++ + 
Sbjct: 63  RA-------IRQNPDAVICVTGCYAQTSPAEIMA-IPGVDIVVGTQDREKMLGYIKQYQE 114

Query: 146 GKRVVDTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            ++ ++   ++     FE L +            A L IQEGC+ FCTFC++P+ RG+  
Sbjct: 115 ERQPINGVSNIMKARVFEELDVP----AFTDRTRASLKIQEGCNNFCTFCIIPWARGLLR 170

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKGLVR 262
           SR   +V+ +A++L+D G  EI L G +     G G D +   F+ LL  L S +KGL R
Sbjct: 171 SRDPEEVIRQAQQLVDAGYKEIVLTGIHTG---GYGEDMKDYNFAQLLKELDSRVKGLKR 227

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R ++     ++D +I+     D ++ +LH+P+QSGS+ +LK M R++T   +   + ++
Sbjct: 228 IRISSIEASQITDEVIEVLDRSDKIVRHLHIPLQSGSNSVLKRMRRKYTMEFFADRLTKL 287

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           +   P +A++SD IVGFPGET+++F  T + + +  +++   F YS R GTP + M  QV
Sbjct: 288 KKALPGLAVTSDVIVGFPGETEEEFMETYNFIKEHKFSELHVFPYSKRTGTPAARMDGQV 347

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK---LVGRSPWLQSVV 439
           DENVK ER+  L     +    +     G ++E++ E+   E G+   LVG +     VV
Sbjct: 348 DENVKNERVHKLIALSDQLAKEYASDYEGDVLEIIPEEPFTETGEGNLLVGYTDNYIKVV 407

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG ++KV+I         G+ V
Sbjct: 408 FEGSEDLIGQLVKVKILKAGYPYNKGQFV 436


>gi|42525235|gb|AAS18317.1| CDK5 regulatory subunit associated protein 1 transcript variant 3
           [Homo sapiens]
          Length = 574

 Score =  408 bits (1048), Expect = e-111,   Method: Composition-based stats.
 Identities = 150/475 (31%), Positives = 251/475 (52%), Gaps = 39/475 (8%)

Query: 17  IVDQCI-VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREK 75
           ++D+ +   ++ ++++YGCQMNV D+     +    GY R +++ +AD+I+L TC IREK
Sbjct: 91  MMDELLGRQRKVYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCSIREK 150

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135
           A + +++ L +++ LK  R +    L + + GC+A+   EEIL R  +V+++ GP  Y  
Sbjct: 151 AEQTIWNRLHQLKALKTRRPRSRVPLRIGILGCMAERLKEEILNREKMVDILAGPDAYRD 210

Query: 136 LPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
           LP LL  A  G++  +   S+++ +  +  V          +AF++I  GCD  C++C+V
Sbjct: 211 LPRLLAVAESGQQAANVLLSLDETYADVMPVQTS---ASATSAFVSIMRGCDNMCSYCIV 267

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG---------------KGL 240
           P+TRG E SR ++ +++E +KL + G+ E+TLLGQNVN++R                +G 
Sbjct: 268 PFTRGRERSRPIASILEEVKKLSEQGLKEVTLLGQNVNSFRDNSEVQFNSAVPTNLSRGF 327

Query: 241 DGEKCT------FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP 294
                T      F+ LL  +S +   +R+R+T+ HP+D  D +++   + D +   +HLP
Sbjct: 328 TTNYKTKQGGLRFAHLLDQVSRVDPEMRIRFTSPHPKDFPDEVLQLIHERDNICKQIHLP 387

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
            QSGS R+L++M R ++   Y +++  IR   P +++SSDFI GF GET++D   T+ L+
Sbjct: 388 AQSGSSRVLEAMRRGYSREAYVELVHHIRESIPGVSLSSDFIAGFCGETEEDHVQTVSLL 447

Query: 355 DKIGYAQAFSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQI 413
            ++ Y   F F YS R  T     + + V E VK  RL  L    RE+    N   VG  
Sbjct: 448 REVQYNMGFLFAYSMRQKTRAYHRLKDDVPEEVKLRRLEELITIFREEATKANQTSVGCT 507

Query: 414 IEVLIEKHGKEKGK-LVGRSPWLQSVVLNSKN------------HNIGDIIKVRI 455
             VL+E   K     L GR+     V+                    GD + V++
Sbjct: 508 QLVLVEGLSKRSATDLCGRNDGNLKVIFPDAEMEDVNNPGLRVRAQPGDYVLVKV 562


>gi|160939106|ref|ZP_02086457.1| hypothetical protein CLOBOL_04000 [Clostridium bolteae ATCC
           BAA-613]
 gi|158438069|gb|EDP15829.1| hypothetical protein CLOBOL_04000 [Clostridium bolteae ATCC
           BAA-613]
          Length = 459

 Score =  408 bits (1048), Expect = e-111,   Method: Composition-based stats.
 Identities = 141/448 (31%), Positives = 226/448 (50%), Gaps = 13/448 (2%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + F  S GC  N+ D+ +M  +   +G    +   +AD+I++NTC     A E+  + + 
Sbjct: 13  KLFCVSLGCDKNLVDTEKMLGLLNGRGITFTDDETEADVILVNTCCFIGDAKEESVNTIL 72

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +   K      G    ++VAGC+AQ   +EIL   P V+ ++G  +Y  + ++L+    
Sbjct: 73  DMARYKEE----GNLKALLVAGCLAQRYKQEILDEIPEVDAILGTTSYEEVAKVLDEVLA 128

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G+          D  E             G  AFL I EGCDK CT+C++PY RG   S 
Sbjct: 129 GRTGTHLS-CFHDLSELPQTEVRRVVTTGGHYAFLKIAEGCDKRCTYCIIPYLRGPYRSV 187

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            + Q+V EAR+L + GV E+ L+ Q      G+ L GEKC    LL  L++I G+  +R 
Sbjct: 188 PIEQLVKEARQLAEAGVKELILVAQETT-LYGRDLYGEKC-LPRLLRELAKIPGIYWIRI 245

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
              +P +++D LI+     + +  YL +P+Q  SDRILK M RR    E  + I ++R  
Sbjct: 246 QYCYPEEITDELIETIRTEEKVCNYLDIPIQHASDRILKRMGRRTNKEELMERIGKLRQE 305

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            PDIAI +  I GFPGET+ D    MD V+++ + +   F YS    TP  +  +QV E 
Sbjct: 306 IPDIAIRTTLISGFPGETESDHEELMDFVNEMEFERLGVFAYSAEEDTPAFSYPDQVPEE 365

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVLN 441
           VK ER   + +  ++      +  VG+++ VLIE    ++   VGR+    P +  ++  
Sbjct: 366 VKEERRDEIMELQQDIAFEHCENMVGRVLTVLIEGKVVDEPAYVGRTYMDAPNVDGLIFV 425

Query: 442 SKNHNI--GDIIKVRITDVKISTLYGEL 467
           + +  +  GD ++V++T      L GE+
Sbjct: 426 NGDVELMSGDFVRVKVTGAAEYDLIGEV 453


>gi|291457707|ref|ZP_06597097.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bifidobacterium breve DSM
           20213]
 gi|291380760|gb|EFE88278.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bifidobacterium breve DSM
           20213]
          Length = 483

 Score =  408 bits (1048), Expect = e-111,   Method: Composition-based stats.
 Identities = 159/453 (35%), Positives = 246/453 (54%), Gaps = 23/453 (5%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD----DADLIVLNTCHIREKAAEKVYS 82
           F + + GCQMNV+DS R+  +  + GY           D DLIVLNTC +RE AAE++Y 
Sbjct: 30  FHIHTLGCQMNVHDSERIAGVLETDGYVPATEEQVNDHDLDLIVLNTCAVRENAAERMYG 89

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +G    +K    ++  +L + V GC+AQ + ++I  ++P V  V G +    LP+LL +
Sbjct: 90  TVGLWAEMK----RQRPNLQIAVGGCMAQLDRQKIANKAPWVAAVFGTKNIGDLPQLLNQ 145

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
                R  DT     D   +         R   V++++ I  GC+  CTFC+VP TRG E
Sbjct: 146 ----NRATDTPQVKVDDQLQQFPSQLPAARASRVSSWVAISVGCNNTCTFCIVPTTRGKE 201

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
             R    ++DE R+ + NG  E+TLLGQNVN++ G G+ G++  FS LL +   I GL R
Sbjct: 202 KDRRPGDILDEVRQCVANGAKEVTLLGQNVNSF-GYGI-GDRYAFSKLLRACGTIDGLER 259

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+T+ HP   +D +I+A  +   +M  LH+P+QSGSD+IL++M R + A ++  I++++
Sbjct: 260 VRFTSPHPAAFTDDVIEAMAETPNVMHQLHMPLQSGSDKILRAMRRSYRASKFMTILEKV 319

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R   PD  IS+D IVGFPGET++DF+ T+D+V +  ++ AF+F YSPR GTP + M EQV
Sbjct: 320 RQAMPDAQISTDIIVGFPGETEEDFQQTLDVVRQARFSSAFTFIYSPRPGTPAAEM-EQV 378

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK----HGKEKGKLVGRSPWLQSV 438
             +V  +R   L     +       +  G+ +EV+I         +  ++ GR      V
Sbjct: 379 PHDVVQDRFNRLVALQEQITAENLQSFEGRDVEVMITGTQGKKDADTHRVTGREKTGVLV 438

Query: 439 VLNSKN----HNIGDIIKVRITDVKISTLYGEL 467
            +          IGD +   +T      L  + 
Sbjct: 439 HIGVPEGQPMPQIGDFVTATVTHAGRHNLIADP 471


>gi|328907278|gb|EGG27044.1| RNA modification enzyme, MiaB family [Propionibacterium sp. P08]
          Length = 493

 Score =  408 bits (1048), Expect = e-111,   Method: Composition-based stats.
 Identities = 163/466 (34%), Positives = 260/466 (55%), Gaps = 24/466 (5%)

Query: 13  MVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYE---RVNSMDDADLIVLNT 69
           M +  +     P  + V +YGCQMNV+DS R+  +    GY    R +++  AD++V NT
Sbjct: 4   MPNNTLQHAEAP-TYRVVTYGCQMNVHDSERIAGLLEEAGYVPDPRTDTLAPADVVVFNT 62

Query: 70  CHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG 129
           C +RE A  ++Y  LG + ++K++       + + V GC+AQ + + ++ R+P V+VV G
Sbjct: 63  CAVRENADNRLYGTLGHMASVKSA----NPGMQLAVGGCMAQKDKDAVVARAPWVDVVFG 118

Query: 130 PQTYYRLPELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
                 LP LL+RAR      V+ + S+      L        R    +A+++I  GC+ 
Sbjct: 119 THNVGSLPALLKRARHNATAQVEIEESLITFPSNLPT-----RRDSAYSAWVSISVGCNN 173

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS 248
            CTFC+VP  RG E  R   +++ E R L+D GV E+TLLGQNVN++  +   G++  F+
Sbjct: 174 TCTFCIVPQLRGRETDRRPGEILSEIRALVDEGVQEVTLLGQNVNSYGVQF--GDRGAFA 231

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
            LL +   I GL R+R+T+ HP   +D +I+A  +   +MP LH+P+QSGSD +L+ M R
Sbjct: 232 KLLRACGNIDGLERVRFTSPHPAAFTDDVIEAMAETPNVMPSLHMPLQSGSDEVLRRMRR 291

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
            + + ++  I+DR+R   PD AI++D IVGFPGETD DF  TM +V +  ++ AF+F+YS
Sbjct: 292 SYRSTKFLGILDRVREAIPDAAITTDIIVGFPGETDKDFAETMRVVAESKFSAAFTFQYS 351

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKG- 426
            R  TP   M +QV + +  ER   L + + +     N+A VG+ +EV+  E  G++   
Sbjct: 352 IRPHTPAGVMADQVPKPIVQERYERLVELVDDIAWQENEAQVGRTVEVMFAEGEGRKDEA 411

Query: 427 --KLVGRSPWLQSVVL---NSKN-HNIGDIIKVRITDVKISTLYGE 466
             ++ GR+   + V +      +    GDI +V IT      L  +
Sbjct: 412 THRVTGRACDNRLVHVSLNPGDDVPRPGDIGEVVITSGHPHHLVAD 457


>gi|24213805|ref|NP_711286.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Leptospira
           interrogans serovar Lai str. 56601]
 gi|45658409|ref|YP_002495.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Leptospira
           interrogans serovar Copenhageni str. Fiocruz L1-130]
 gi|81406958|sp|Q72PA4|MIAB_LEPIC RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|81470597|sp|Q8F743|MIAB_LEPIN RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|24194637|gb|AAN48304.1| 2-methylthioadenine synthetase [Leptospira interrogans serovar Lai
           str. 56601]
 gi|45601652|gb|AAS71132.1| conserved hypothetical protein [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 449

 Score =  408 bits (1048), Expect = e-111,   Method: Composition-based stats.
 Identities = 154/452 (34%), Positives = 252/452 (55%), Gaps = 22/452 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + ++++YGCQMN YDS  +  +     Y   +  +++D+I LNTC IRE A  K+Y+ L 
Sbjct: 12  KVYIETYGCQMNEYDSGIVSSLMRDAEYSTSSDPENSDIIFLNTCAIRENAHAKIYNRLQ 71

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +  LK    K   +L++ V GC+AQ  G+++  +   +++VVGP  Y  LPEL++R R 
Sbjct: 72  SLGYLK----KRNPNLVIGVLGCMAQNLGDDLFHQELPLDLVVGPDNYRSLPELIQRIRK 127

Query: 146 GKRVVD-TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
           G+  +  T  S  + ++ +           G+ AF+TI  GC+ FCTFCVVPYTRG E S
Sbjct: 128 GENSISLTRLSKIETYDEIEP-----RVVNGIQAFVTIMRGCNNFCTFCVVPYTRGRERS 182

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R    +V E + L+  G+ +ITLLGQNVN+++ +  D     F+ L+  L +   + R+R
Sbjct: 183 RDPKSIVREVQDLVQKGIRQITLLGQNVNSYKEQDTD-----FAGLIQMLLDETSIERIR 237

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +T+ HP+D    L++   +     P +HLP+Q+G+ R+L+ M R ++  E+  ++  IR+
Sbjct: 238 FTSPHPKDFPTHLLQLMSENPRFCPNIHLPLQAGNTRVLEEMKRSYSKEEFLDVVKEIRN 297

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG-SNMLEQVD 383
           + PD+ I++D IVGFP ET+++F  T+ +V ++ +  AF FKYS R GT     + + V 
Sbjct: 298 IVPDVGITTDIIVGFPNETEEEFEDTLAVVREVQFDMAFMFKYSEREGTMAQRKLPDNVP 357

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLVGRSPWLQSVVLNS 442
           E VK+ RL  L           N A +G++  +LIE   ++   +L GR+P  +  V   
Sbjct: 358 EEVKSARLTKLVDLQTSISHEQNRARIGRVYSILIENISRKSEKQLCGRTPCGRMTVFPL 417

Query: 443 KNH-----NIGDIIKVRITDVKISTLYGELVV 469
                    IG  + V+I     +TL G ++ 
Sbjct: 418 PQETNVSGMIGSTVSVQIESATSATLKGRILA 449


>gi|157736509|ref|YP_001489192.1| tRNA-methylthiotransferase [Arcobacter butzleri RM4018]
 gi|229890442|sp|A8ERE9|MIAB_ARCB4 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|157698363|gb|ABV66523.1| tRNA-methylthiotransferase [Arcobacter butzleri RM4018]
          Length = 436

 Score =  408 bits (1048), Expect = e-111,   Method: Composition-based stats.
 Identities = 146/447 (32%), Positives = 251/447 (56%), Gaps = 19/447 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQ-GYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ F+++ GCQMN  DS  ++       GY    +++DADLI++NTC +RE+  +K++S 
Sbjct: 5   KKLFIQTLGCQMNDTDSQHIQAELEKHKGYVTTQNIEDADLIIINTCSVRERPVQKLFSE 64

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G+    K    K      + V GC A   G++I++R+P V+ VVG +   ++ ++++  
Sbjct: 65  IGQFNKKKKEGAK------IGVCGCTASHLGQDIIKRAPYVDFVVGARNISKIKDVVDVK 118

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
              +  +D D S  +             +     A + I  GCDK CT+C+VP TRG EI
Sbjct: 119 GAVEVSIDNDESTYEF---------STAKTNKYRASVNISVGCDKKCTYCIVPSTRGEEI 169

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVR 262
           S     +V++ RK ++ G  E+ LLGQNVN++  K  D  EK TF+ LL  +S+I GL R
Sbjct: 170 SIPPEMIVEQVRKSVEQGAVEVMLLGQNVNSYGRKFSDKREKYTFTKLLQDVSKIDGLER 229

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+T+ HP  M D  I+       +   +H+P+QSGS  +LK+M R ++   +     ++
Sbjct: 230 IRFTSPHPLHMDDEFIEEFAKNPKISKCIHMPLQSGSTSVLKAMKRGYSKEWFLNRASKM 289

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ- 381
           R + P++ I++D IV FPGET +DF  T+D+V+++ + Q F+FKYSPR GT   N+ ++ 
Sbjct: 290 RELVPNLRITTDIIVAFPGETQEDFLDTLDVVEQVKFDQIFNFKYSPRPGTEALNLKDKE 349

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           + + + ++RL+ L +  +          +G+ + +L+E   K  G++ G +     V   
Sbjct: 350 LPDEIGSQRLIDLIELHKRYLEESMPKLIGETLNILVESL-KPNGEVCGYTDNYLQVFAK 408

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
             +  +G  + V+ITDV  ++L GE+V
Sbjct: 409 GSDELLGKFVNVKITDVTRTSLKGEVV 435


>gi|157693043|ref|YP_001487505.1| 2-methylthioadenine synthetase [Bacillus pumilus SAFR-032]
 gi|157681801|gb|ABV62945.1| 2-methylthioadenine synthetase [Bacillus pumilus SAFR-032]
          Length = 453

 Score =  407 bits (1047), Expect = e-111,   Method: Composition-based stats.
 Identities = 142/450 (31%), Positives = 234/450 (52%), Gaps = 22/450 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
                + GC++N Y++  +  +F   GYER      AD+ V+NTC +     +K    + 
Sbjct: 4   TVAFHTLGCKVNHYETEAIWQLFKEAGYERKEYESKADVYVINTCTVTNTGDKKSRQVIR 63

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R        I+   D ++ V GC AQ    EI+   P V++VVG Q  ++L   +E  R 
Sbjct: 64  RA-------IRHNPDGVICVTGCYAQTSPAEIMA-IPGVDIVVGTQDRHKLLGYIEEFRR 115

Query: 146 GKRVVDTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            ++ ++   ++     FE L +            A L IQEGC+ FCTFC++P+ RG+  
Sbjct: 116 ERQPINGVGNIMKARVFEELDVP----AFTDRTRASLKIQEGCNNFCTFCIIPWARGLLR 171

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE-IKGLVR 262
           SR   +V+++A++L+D G  EI L G +     G G D +   F+ LL  L E + GL R
Sbjct: 172 SRDPEEVINQAQQLVDAGYKEIVLTGIHTG---GYGEDLKDYNFAKLLKELDERVNGLKR 228

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R ++     ++D +I+     D ++ +LH+P+QSGS+ +LK M R++T   + + + ++
Sbjct: 229 IRISSIEASQITDEVIEVLDQSDKIVRHLHIPLQSGSNTVLKRMRRKYTMEFFAERLTKL 288

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           +   P +A++SD IVGFPGET+++F  T + V    +++   F YS R GTP + M +QV
Sbjct: 289 KKALPGLAVTSDVIVGFPGETEEEFLETYNFVKDHQFSELHVFPYSKRTGTPAARMEDQV 348

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK----GKLVGRSPWLQSV 438
           DENVK ER+  L     +    +  A  G ++E++ E+  KE+       VG +     V
Sbjct: 349 DENVKNERVHRLIALSDQLAKEYASAYEGDVLEIIPEESFKEQEGKHNLYVGYTDNYMKV 408

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           V       IG ++KV+IT        G+ V
Sbjct: 409 VFEGTEDMIGRLVKVKITKAGYPYNEGQFV 438


>gi|297798268|ref|XP_002867018.1| radical SAM domain-containing protein [Arabidopsis lyrata subsp.
           lyrata]
 gi|297312854|gb|EFH43277.1| radical SAM domain-containing protein [Arabidopsis lyrata subsp.
           lyrata]
          Length = 636

 Score =  407 bits (1047), Expect = e-111,   Method: Composition-based stats.
 Identities = 166/504 (32%), Positives = 258/504 (51%), Gaps = 52/504 (10%)

Query: 15  SQIVDQCIVPQ-RFFVKSYGCQMNVYDSLRMEDMFFSQGY-ERVNSMDDADLIVLNTCHI 72
              +D  +  + R + ++YGCQMN+ D   +  +  + GY E V   + A++I +NTC I
Sbjct: 115 ESTLDSDVASKGRIYHETYGCQMNINDMEIVLSIMKNSGYKEVVTDPESAEVIFINTCAI 174

Query: 73  REKAAEKVYSFLGRIRNLKNSRI--------KEGGDLLVVVAGCVAQAEGEEILRRSPIV 124
           R+ A ++V+  L     LK            +      VVV GC+A+   ++IL    +V
Sbjct: 175 RDNAEQRVWQRLNYFWFLKREWKVNVAKGRAQSLKPPKVVVLGCMAERLKDKILDSDKMV 234

Query: 125 NVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQE 184
           +VV GP  Y  LP LLE   +G++ ++T  S+E+ +  +S V      +  +TAF+++  
Sbjct: 235 DVVCGPDAYRDLPRLLEEVDYGQKGINTLLSLEETYADISPVRIS---ENSITAFVSVMR 291

Query: 185 GCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE- 243
           GC+  C FC+VP+TRG E SR +  ++ E  +L ++GV E+TLLGQNVN++     D E 
Sbjct: 292 GCNNMCAFCIVPFTRGRERSRPVESIIREVGELWESGVKEVTLLGQNVNSYNDDSSDPES 351

Query: 244 -------------------KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL 284
                                 F+DLL  LS     +R R+T+ HP+D  D L+    D 
Sbjct: 352 GANWEYSEGFSSRCKVKNMGLRFADLLDRLSVQFPEMRFRFTSPHPKDYPDELLYLMRDR 411

Query: 285 DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETD 344
             +   +HLP QSG+ RIL+ M R +T   Y  ++ +IRS+ PD+AI+SDFI GF GET+
Sbjct: 412 HNICNLIHLPAQSGNSRILEQMRRGYTREAYLDLVKKIRSIIPDVAITSDFITGFCGETE 471

Query: 345 DDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQV 403
           ++ + T+ LV  +GY  A+ F YS R  T       + V E VK  RL  L +  RE   
Sbjct: 472 EEHQETLSLVRAVGYDMAYMFAYSMREKTHAHRKYTDDVPEEVKQRRLTELIEAFRETTG 531

Query: 404 SFNDACVGQIIEVLIEKHGKE--KGKLVGRSPWLQSVVLNSK----------------NH 445
              ++ VG I  VL+E   K   + +L+G++     V   +K                N 
Sbjct: 532 PCYNSQVGSIQLVLVEGPNKRAPETELIGKTDKGHRVSFVTKPLFDTACLLDGDDLKRNP 591

Query: 446 NIGDIIKVRITDVKISTLYGELVV 469
            IGD ++VRI     ++L+GE + 
Sbjct: 592 EIGDFVEVRIEKSTRASLFGEALA 615


>gi|317131675|ref|YP_004090989.1| RNA modification enzyme, MiaB family [Ethanoligenens harbinense
           YUAN-3]
 gi|315469654|gb|ADU26258.1| RNA modification enzyme, MiaB family [Ethanoligenens harbinense
           YUAN-3]
          Length = 467

 Score =  407 bits (1047), Expect = e-111,   Method: Composition-based stats.
 Identities = 166/448 (37%), Positives = 242/448 (54%), Gaps = 17/448 (3%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
             P++ +V++YGCQ NV DS ++  M    GY   +S  DADL++ NTC +RE A ++V 
Sbjct: 26  AAPKKAYVRTYGCQQNVSDSEKLSGMLSEMGYVFTDSPKDADLVLFNTCAVREHAEQRVL 85

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPEL 139
             +G ++  K        D+L+ + GC+ Q     E+I +  P V++V G     R PEL
Sbjct: 86  GNVGALKGFKAK----KPDMLIALCGCMMQERHVSEKIKQSYPYVDLVFGTGALPRFPEL 141

Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           L RA      V          E + +      R    TA+L +  GC+ FCT+C+VPY R
Sbjct: 142 LWRALTENGRVFDLEEQNGVVEGVPV-----RRDGAYTAWLPVMNGCNNFCTYCIVPYVR 196

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G E SR+  QV+ EA +L+  GV ++TLLGQNVN+  GK L  +   F+ LL  L+ + G
Sbjct: 197 GREHSRAPEQVLREAEELLAAGVKDLTLLGQNVNS-YGKNLQND-WDFAKLLEKLAALPG 254

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
             RL + TSHP+D S  L         +   LHLP QSGSDRIL+ MNR +TA +YR+++
Sbjct: 255 EFRLHFMTSHPKDASHRLFDTIAANPKISRRLHLPFQSGSDRILRQMNRGYTAAQYRELV 314

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
              ++  P + ++SD IVGFPGET +DF+ T+ LV+++G+A  ++F YSPR GTP + M 
Sbjct: 315 AYAKAAIPGLCLTSDVIVGFPGETCEDFKQTLALVEEVGFANLYTFLYSPRKGTPAAEMP 374

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV 439
           + V    KA     L      +  +F ++ VG    VL E    E G   G +    +V 
Sbjct: 375 DPVAREEKARWFEELLAAQGVKSRAFLESHVGMAGRVLAENV--ENGLAAGHTDSGVAVS 432

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGEL 467
             +     G   +V  T+VK  TL GE 
Sbjct: 433 FPAPAA--GRFYEVSFTEVKGVTLLGEP 458


>gi|270284053|ref|ZP_05965469.2| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bifidobacterium gallicum
           DSM 20093]
 gi|270278006|gb|EFA23860.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bifidobacterium gallicum
           DSM 20093]
          Length = 479

 Score =  407 bits (1047), Expect = e-111,   Method: Composition-based stats.
 Identities = 167/453 (36%), Positives = 254/453 (56%), Gaps = 24/453 (5%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVN----SMDDADLIVLNTCHIREKAAEKVYS 82
           F+V + GCQMNV+DS R+  +  + GY           D DLIVLNTC +RE AAE++Y 
Sbjct: 27  FYVHTLGCQMNVHDSERIAGVLEADGYVPATQEQMDAQDVDLIVLNTCAVRENAAERMYG 86

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +G    +K  R     +L + V GC+AQ + E I R++P V+ V G +    LP LL++
Sbjct: 87  TVGLWYRIKQER----PNLQIAVGGCMAQLDRERICRKAPWVSAVFGTKNIGDLPALLDQ 142

Query: 143 AR-FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
            R  G+  V  + ++      +   D   +R   ++ +++I  GC+  CTFC+VP TRG 
Sbjct: 143 NRLTGEPQVKVNDNLT-----MFPSDLPVDRASKISNWVSISVGCNNTCTFCIVPTTRGK 197

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E  R    V+ E ++ +DNG  E+TLLGQNVN+  G G+ G++  FS LL +   I+GL 
Sbjct: 198 EHDRRPGDVLAEVQRCVDNGAKEVTLLGQNVNS-YGYGI-GDRFAFSKLLRACGSIEGLE 255

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+T+ HP   +D +I A  +   +M  LH P+QSGSDR+L++M R +   ++  I+D+
Sbjct: 256 RVRFTSPHPAAFTDDVIAAMAETPNVMHQLHFPLQSGSDRVLRAMRRSYRTSKFLTILDK 315

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           IR+  PD  IS+D IVGFPGET++DF+AT+D+V++  +A AF+F YSPR GTP + M EQ
Sbjct: 316 IRAAMPDAQISTDIIVGFPGETEEDFQATLDVVEQARFASAFTFIYSPRPGTPAAAM-EQ 374

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG---KLVGRSPWLQSV 438
           +D +V  ER   L                G+ +EV+I   G++     ++ GR    Q V
Sbjct: 375 IDHDVVQERFERLVALQERITAENLATFEGRDVEVMITGSGRKDDNTHRVTGRERTGQLV 434

Query: 439 VLNSKN----HNIGDIIKVRITDVKISTLYGEL 467
            +          +GD +   +T      L  + 
Sbjct: 435 HIGVPEGFDTPQVGDFVTATVTHAGRHNLIADP 467


>gi|108760706|ref|YP_629733.1| putative tRNA modifying protein [Myxococcus xanthus DK 1622]
 gi|123248036|sp|Q1DC90|RIMO_MYXXD RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|108464586|gb|ABF89771.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Myxococcus xanthus
           DK 1622]
          Length = 476

 Score =  407 bits (1047), Expect = e-111,   Method: Composition-based stats.
 Identities = 130/456 (28%), Positives = 221/456 (48%), Gaps = 21/456 (4%)

Query: 20  QCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEK 79
           +   P+  ++ + GC  N  DS  M      +GY  V    DA +IV+NTC     A ++
Sbjct: 2   ETTTPKSLYMMTLGCPKNRVDSEVMLGTLRHRGYTLVQEASDAQVIVVNTCAFIGPAKQE 61

Query: 80  VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL 139
               +  +  LK    K G    +VV GC++Q  GEE+ +  P V+  +G   Y ++ +L
Sbjct: 62  SVDSILEMAELK----KSGACKTLVVTGCLSQRYGEELSKEMPEVDHFLGTSAYAQIGDL 117

Query: 140 LERARFGKRVV-DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
           L      ++V+ D DY  +    R++ +          TA+L I EGCD  C FC++P  
Sbjct: 118 LAAEASPRQVIPDPDYIHDANTPRINSMP-------KYTAYLKISEGCDNACAFCIIPTL 170

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258
           RG + SR +  +V EA++L D+GV E+ L+ Q++ A  G  L G +    DLL +L ++ 
Sbjct: 171 RGGQRSRPIDDIVAEAKQLADSGVQELNLVAQDLTA-YGHDLPG-RPKLHDLLKALVQVD 228

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
            +  +R   ++PR   D LI+       +  YL +PVQ  SD++L SM R   +   + +
Sbjct: 229 -VKWIRLHYAYPRIFPDELIEVMASEPKIARYLDMPVQHVSDKLLLSMKRGRNSEFLKGL 287

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           + ++R   P + + +  IVG PGET++DF    + V    + +   F+YS   GT   ++
Sbjct: 288 LTKLRERVPGLVMRTSLIVGLPGETEEDFEMLKEFVKTQRFERLGVFQYSDEEGTAAYDL 347

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-----GKLVGRSP 433
            ++V + +   R   +    +      N   VG+ +EVL+E    E      G+  G++P
Sbjct: 348 PDKVPQKLIERRWREVMAIQKRINREQNKKLVGKRLEVLVEGPAPETEHLLVGRHQGQAP 407

Query: 434 WLQS-VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            +   V +N      G+I+ V +T+     L   +V
Sbjct: 408 DIDGMVYINDGLAYPGEIVTVEVTEAHDYDLVARVV 443


>gi|229829135|ref|ZP_04455204.1| hypothetical protein GCWU000342_01220 [Shuttleworthia satelles DSM
           14600]
 gi|229792298|gb|EEP28412.1| hypothetical protein GCWU000342_01220 [Shuttleworthia satelles DSM
           14600]
          Length = 534

 Score =  407 bits (1047), Expect = e-111,   Method: Composition-based stats.
 Identities = 160/455 (35%), Positives = 254/455 (55%), Gaps = 16/455 (3%)

Query: 19  DQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAE 78
           ++      F V ++GCQMN  DS ++  +    GY    S ++AD ++ NTC +RE A  
Sbjct: 89  EEAGRKLTFCVTTFGCQMNARDSEKLRGILEKIGYVEKES-EEADFVIYNTCTVRENANN 147

Query: 79  KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRL 136
           KVY  LG +   K    K    +++ + GC+ Q +   ++I +    V+++ G    Y+ 
Sbjct: 148 KVYGRLGYLHGFK----KTNPGMMIALCGCMMQEDVVVDKIRQSYRFVDLIFGTHNIYKF 203

Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
            EL   A    +++   +   D+      V+  Y+ K G    + I  GCD FCT+C+VP
Sbjct: 204 AELAYEALQADQMIIDIWKDADRIVENLPVERKYSFKSG----VNIMFGCDNFCTYCIVP 259

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256
           Y RG E SR   +++ E  +L+D+GV E+ LLGQNVN+  G GL+ +  +F+ LL  + +
Sbjct: 260 YVRGRERSRRPVEIIREIERLVDDGVVEVMLLGQNVNS-YGAGLE-DHMSFAQLLSEIEK 317

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           I+GL R+R+ TSHP+D+SD LI      D +  ++HLP+QSGS R+L  MNRR+T   Y 
Sbjct: 318 IEGLARIRFMTSHPKDLSDELIDVIAASDKICHHVHLPLQSGSSRLLARMNRRYTKESYL 377

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
            + DRIR   P+++I++D IVGFPGE ++DF  TMD+V ++GY  AF+F YSPR GTP +
Sbjct: 378 ALADRIRKRIPNVSITTDIIVGFPGEEEEDFEDTMDVVRQVGYDSAFTFVYSPRTGTPAA 437

Query: 377 NM--LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSP 433
                +Q   +V  +R   L  + ++   +   A  G I EVL+E+  + +   + GR  
Sbjct: 438 KWAREDQTPASVIKDRFDRLLAQTQKDARNRAAAYTGSIQEVLVEEVNRQDPALVTGRMS 497

Query: 434 WLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
              +V        IG +++VR+T+ +     GE +
Sbjct: 498 NNSTVHFPGGADLIGRLVQVRLTECRGFYYIGEQI 532


>gi|78224396|ref|YP_386143.1| hypothetical protein Gmet_3205 [Geobacter metallireducens GS-15]
 gi|123729170|sp|Q39QQ6|RIMO_GEOMG RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|78195651|gb|ABB33418.1| SSU ribosomal protein S12P methylthiotransferase [Geobacter
           metallireducens GS-15]
          Length = 445

 Score =  407 bits (1047), Expect = e-111,   Method: Composition-based stats.
 Identities = 149/456 (32%), Positives = 233/456 (51%), Gaps = 23/456 (5%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + ++  + S GC  N+ D+  M        YE      +AD+I++NTC     A ++   
Sbjct: 1   MKEKVSMVSLGCPKNLVDAEVMLGCLAKDQYEITTDEHEADIIIVNTCSFIGDAKKESID 60

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +  + + K     +G   L+VV GC+ Q   EE+    P V++ VG   Y R+ E++  
Sbjct: 61  TILDLADRK----HDGRCKLLVVTGCLPQRYQEELATELPEVDIFVGTADYPRIAEIIAE 116

Query: 143 ----ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
               A   + + D +Y  ++   RL             TA+L I EGC   C++CV+P  
Sbjct: 117 KRGVAEQLRYISDPNYIFDESLPRLKSSP-------AYTAYLKIAEGCSNCCSYCVIPSL 169

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258
           RG   SR L  ++ EAR L+  G  EI L+ Q++ AW G+ L G   T  +L+  L++I 
Sbjct: 170 RGALRSRPLDNLLMEARTLVATGTREINLIAQDITAW-GRDLPGSP-TLEELVRELAKIV 227

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           GL  +R   ++P  ++D LI+       +  YL +P+Q  SD +LK MNRR T  + R +
Sbjct: 228 GLRWIRLLYAYPDGITDGLIEIIKTEPKVCKYLDIPIQHISDPVLKRMNRRSTEPQIRAL 287

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           I +IR+  P+IA+ +  IVGFPGET++DFR  +  V++  + +   F YS   GTP + M
Sbjct: 288 IAKIRAEIPEIALRTSLIVGFPGETEEDFRTLLHYVEETQFDRLGVFCYSREEGTPAAGM 347

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GRS----P 433
            +QV E VK +R   L K         N   +    EV++E +  E   L+ GRS    P
Sbjct: 348 EDQVSERVKRDRYKKLMKVQARLSFKRNRRLIDTEEEVIVEGYSDETDLLLKGRSSRQAP 407

Query: 434 WLQS-VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            +   V + + N N+GDI+++RITD     L GE+V
Sbjct: 408 DIDGQVYITAGNANVGDIVRLRITDSSDYDLIGEIV 443


>gi|315635668|ref|ZP_07890931.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Arcobacter butzleri JV22]
 gi|315479965|gb|EFU70635.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Arcobacter butzleri JV22]
          Length = 436

 Score =  407 bits (1046), Expect = e-111,   Method: Composition-based stats.
 Identities = 145/447 (32%), Positives = 251/447 (56%), Gaps = 19/447 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQ-GYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ F+++ GCQMN  DS  ++       GY    +++DADLI++NTC +RE+  +K++S 
Sbjct: 5   KKLFIQTLGCQMNDTDSQHIQAELEKHKGYVTTQNIEDADLIIINTCSVRERPVQKLFSE 64

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G+    K    K      + V GC A   G++I++R+P V+ VVG +   ++ ++++  
Sbjct: 65  IGQFNKKKKEGAK------IGVCGCTASHLGQDIIKRAPYVDFVVGARNISKIKDVVDVK 118

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
              +  +D D S  +             +     A + I  GCDK CT+C+VP TRG EI
Sbjct: 119 GAVEVSIDNDESTYEF---------STAKTNKYRASVNISVGCDKKCTYCIVPSTRGEEI 169

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVR 262
           S     +V++ RK ++ G  E+ LLGQNVN++  +  D  EK TF+ LL  +S+I GL R
Sbjct: 170 SIPPEMIVEQVRKSVEQGAVEVMLLGQNVNSYGRRFSDKREKYTFTKLLQDVSKIDGLER 229

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+T+ HP  M D  I+       +   +H+P+QSGS  +LK+M R ++   +     ++
Sbjct: 230 IRFTSPHPLHMDDEFIEEFAKNPKISKCIHMPLQSGSTSVLKAMKRGYSKEWFLNRASKM 289

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ- 381
           R + P++ I++D IV FPGET +DF  T+D+V+++ + Q F+FKYSPR GT   N+ ++ 
Sbjct: 290 RELVPNLRITTDIIVAFPGETQEDFLDTLDVVEQVKFDQIFNFKYSPRPGTEALNLKDKE 349

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           + + + ++RL+ L +  +          +G+ + +L+E   K  G++ G +     V   
Sbjct: 350 LPDEIGSQRLIDLIELHKRYLEESMPKLIGETLNILVESL-KPNGEVCGYTDNYLQVFAK 408

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
             +  +G  + V+ITDV  ++L GE+V
Sbjct: 409 GSDELLGKFVNVKITDVTRTSLKGEVV 435


>gi|89100455|ref|ZP_01173317.1| hypothetical protein B14911_05476 [Bacillus sp. NRRL B-14911]
 gi|89084798|gb|EAR63937.1| hypothetical protein B14911_05476 [Bacillus sp. NRRL B-14911]
          Length = 450

 Score =  407 bits (1046), Expect = e-111,   Method: Composition-based stats.
 Identities = 135/449 (30%), Positives = 240/449 (53%), Gaps = 21/449 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
                + GC++N Y++  +  +F  +GYER +    +D+ ++NTC +     +K    + 
Sbjct: 3   TVAFHTLGCKVNHYETEAIWQLFKQEGYERTDFESASDVYIINTCTVTNTGDKKSRQVIR 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R        I++  D ++ V GC AQ    EI+   P V++VVG Q   ++ E +E+ + 
Sbjct: 63  RA-------IRKNPDAVICVTGCYAQTSPAEIMA-IPGVDIVVGTQDRVKMLEYIEQYKQ 114

Query: 146 GKRVVDTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            ++ ++   ++     +E L +            A L IQEGC+ FCTFC++P+ RG+  
Sbjct: 115 ERQPINAVGNIMKNRVYEELDVP----AFTDRTRASLKIQEGCNNFCTFCIIPWARGLMR 170

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKGLVR 262
           SR   +V+ +A++L+D G  EI L G +     G G D +    + LL  L +++KGL R
Sbjct: 171 SRDPQEVIRQAQQLVDAGYKEIVLTGIHTG---GYGEDMKDYNLAMLLRDLEAQVKGLKR 227

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LR ++     ++D +I+     +V++ +LH+P+QSGS+ +LK M R++T   + + +DR+
Sbjct: 228 LRISSIEASQITDEVIEVMDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFAERLDRL 287

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           +   P +A++SD IVGFPGET+++F  T + + +  +++   F YS R GTP + M +Q+
Sbjct: 288 KEALPGLAVTSDVIVGFPGETEEEFMETYNFIKEHKFSELHVFPYSKRTGTPAARMEDQI 347

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK---GKLVGRSPWLQSVV 439
           DE +K ER+  L     +    +      +++EV+ E+  KE    G  VG +     VV
Sbjct: 348 DEEIKNERVHRLISLSDQLAKEYASQFENEVLEVIPEEIYKEDPESGLYVGYTDNYLKVV 407

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
             +    +G I+KV+I+        G+ V
Sbjct: 408 FPASEEMVGKIVKVKISKAGYPFNEGQFV 436


>gi|171742622|ref|ZP_02918429.1| hypothetical protein BIFDEN_01735 [Bifidobacterium dentium ATCC
           27678]
 gi|283456298|ref|YP_003360862.1| tRNA 2-methylthioadenosine synthase [Bifidobacterium dentium Bd1]
 gi|171278236|gb|EDT45897.1| hypothetical protein BIFDEN_01735 [Bifidobacterium dentium ATCC
           27678]
 gi|283102932|gb|ADB10038.1| tRNA 2-methylthioadenosine synthase [Bifidobacterium dentium Bd1]
          Length = 503

 Score =  407 bits (1046), Expect = e-111,   Method: Composition-based stats.
 Identities = 166/473 (35%), Positives = 249/473 (52%), Gaps = 25/473 (5%)

Query: 9   GVAHMVSQIVDQCIVPQR--FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD----DA 62
             + +    VD   V  R  F+V + GCQMNV+DS R+  +  + GY           D 
Sbjct: 30  RASKLAEPTVDTAPVRGRGVFYVHTLGCQMNVHDSERIAGVLENAGYVPATEEQYMDHDV 89

Query: 63  DLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSP 122
           DLIV+NTC +RE AAE++Y  +G    +K    +E  +L + V GC+AQ + E I  ++P
Sbjct: 90  DLIVMNTCAVRENAAERMYGTIGLWAEMK----RERPNLQIAVGGCMAQLDRERIAEKAP 145

Query: 123 IVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTI 182
            V+ V G +    LP+LL++AR             + F      D    R   V++++ I
Sbjct: 146 WVDAVFGTKNIGSLPQLLDQARVQGHAQVKVEEELNYFPSQLPTD----RDSRVSSWVAI 201

Query: 183 QEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG 242
             GC+  CTFC+VP TRG E  R    ++ E R+ +D G  EITLLGQNVN++ G G+ G
Sbjct: 202 SVGCNNTCTFCIVPTTRGKEHDRRPGDILAEIRQCVDEGAKEITLLGQNVNSF-GYGI-G 259

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
           ++  FS LL +  EI+GL R+R+T+ HP   +D +I A  +   +M  LH P+QSGSDRI
Sbjct: 260 DRFAFSKLLRACGEIEGLERVRFTSPHPAAFTDDVIAAMAETPNVMHQLHFPLQSGSDRI 319

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           L++M R + + ++  I+ +IR   PD  IS+D IVGFPGET++DF+ TM +V++  ++ A
Sbjct: 320 LRAMRRSYRSAKFLDILRKIREAMPDAQISTDIIVGFPGETEEDFQETMRVVEEARFSSA 379

Query: 363 FSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422
           F+F YSPR GTP + M EQV  +V   R   L                G+ +EV++    
Sbjct: 380 FTFIYSPRPGTPAAEM-EQVPHDVVQNRFERLVALQERITEENLKIFEGRDVEVMVTGAS 438

Query: 423 KEKG----KLVGRSPWLQSVVLNSKN----HNIGDIIKVRITDVKISTLYGEL 467
             K     ++ GR      V +          +GD +   +T      L  + 
Sbjct: 439 GRKDAATHRVTGRERTGVLVHVGIPEGEPMPQVGDFVTATVTHAGRHNLIADP 491


>gi|256827172|ref|YP_003151131.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
           [Cryptobacterium curtum DSM 15641]
 gi|256583315|gb|ACU94449.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
           [Cryptobacterium curtum DSM 15641]
          Length = 448

 Score =  407 bits (1046), Expect = e-111,   Method: Composition-based stats.
 Identities = 173/449 (38%), Positives = 256/449 (57%), Gaps = 15/449 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
            F + ++GCQMN +DS R+  +  S G   V+S  +AD  +  TC +REKA E++   + 
Sbjct: 6   TFSITTFGCQMNKHDSERIAGLLESLGSIAVSSPAEADFSIFMTCCVREKADERLMGQVA 65

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA-R 144
            ++N    +    G   V + GC+ Q +GE++L +   V+VV G      LP+LLE A  
Sbjct: 66  TMKNDAPRKGSPFGRRFVAIGGCIGQRDGEKLLTQLDNVDVVFGTHNMETLPQLLESAIE 125

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G R  +      +  + L       +R+    A+L I  GC+ FCTFC+VPY RG EIS
Sbjct: 126 KGSRRAEIIDGRAEFHDELP-----EDREHPWAAWLPITVGCNNFCTFCIVPYVRGREIS 180

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R L ++ D+AR  +  GV EITLLGQNVN+  G+ L G    F  +L +++   G+ R+R
Sbjct: 181 RPLDEIADQARAYVQQGVKEITLLGQNVNS-YGRDLYGSP-RFDAVLDAVAA-SGIERIR 237

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           + TSHP+D++D +I+    L  LMP LHLP QSGS+RIL +MNRR+T   Y  +I+++R 
Sbjct: 238 FATSHPKDLTDGVIERFATLPNLMPALHLPAQSGSNRILAAMNRRYTIEHYEGLIEKLRV 297

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           VRP IA+S+D IVGFPGET+DDF  T +LV ++GY Q F+F YS R GTP + + +    
Sbjct: 298 VRPYIALSTDIIVGFPGETEDDFEQTCELVKRVGYNQVFTFIYSRRDGTPAARLPDDTPR 357

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GRSPWLQSVVLNSK 443
           +V  ER   L   +RE  ++ N   + + + VLIE   K    ++ G+SP+ Q+V L   
Sbjct: 358 SVIQERFDRLVSIVREGALARNRLSLDRTMPVLIEGISKRNASMMAGKSPYNQTVHLPLP 417

Query: 444 NH-----NIGDIIKVRITDVKISTLYGEL 467
                    G I+   I + +   L G +
Sbjct: 418 AGTSLQQWEGTIVTAHIEEARTWYLRGSM 446


>gi|302670851|ref|YP_003830811.1| tRNA-thiotransferase enzyme MiaB [Butyrivibrio proteoclasticus
           B316]
 gi|302395324|gb|ADL34229.1| tRNA-thiotransferase enzyme MiaB [Butyrivibrio proteoclasticus
           B316]
          Length = 484

 Score =  407 bits (1046), Expect = e-111,   Method: Composition-based stats.
 Identities = 156/448 (34%), Positives = 240/448 (53%), Gaps = 14/448 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
              V ++GCQMN  DS ++  +    GYE   S ++AD ++ NTC +R+ A ++VY  LG
Sbjct: 46  TACVVTFGCQMNARDSEKLLAILRLVGYEESES-ENADFVIYNTCTVRDNADQRVYGRLG 104

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQ--AEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
              N K    K+   + + + GC+ Q     E+I +    V+++ G    Y+  ELL   
Sbjct: 105 ACSNFK----KKNPHMKIALCGCMMQEQTVIEKIKKSYRFVDLIFGTHNIYKFAELLCTC 160

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
               R++   +   DK     + D    RK    + + I  GC+ FCT+C+VPY RG E 
Sbjct: 161 LESDRMIIDIWKETDKI----VEDLPVLRKYPFKSGVNIMFGCNNFCTYCIVPYVRGRER 216

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAW--RGKGLDGEKCTFSDLLYSLSEIKGLV 261
           SRS   +V E  KL+ +GV E+ LLGQNVN++    K  D  K +F +LL  + +++GL 
Sbjct: 217 SRSPRDIVRECEKLVADGVKEVMLLGQNVNSYGLDFKDDDPNKISFPELLEEVCKVEGLE 276

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+ T HP+D SD L+        +  ++HLP+QSGS  IL+ MNR++T   Y  ++D+
Sbjct: 277 RIRFMTPHPKDFSDELLDVIERNPKIARHIHLPLQSGSTEILRRMNRKYTKDSYLALVDK 336

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           IR+  PD+AI++D IVGFPGET  D   T+D+V+K  +  AF+F YS R GTP +   +Q
Sbjct: 337 IRTKLPDVAITTDIIVGFPGETPADVDETIDVVEKASFDNAFTFIYSKRTGTPAAGFPDQ 396

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GRSPWLQSVVL 440
           V E    E    L K ++E     ++   G   +VL+E   ++   LV GR      V  
Sbjct: 397 VPEEEVKENFDRLLKVVQETARKQSEKLTGVTEKVLVESVNEQDSSLVTGRLSNNTLVHF 456

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 IG+++ V++ +       GE V
Sbjct: 457 PGDESLIGEMVDVKLANCHGFYFTGERV 484


>gi|309801462|ref|ZP_07695589.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bifidobacterium dentium
           JCVIHMP022]
 gi|308221977|gb|EFO78262.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bifidobacterium dentium
           JCVIHMP022]
          Length = 484

 Score =  407 bits (1046), Expect = e-111,   Method: Composition-based stats.
 Identities = 167/473 (35%), Positives = 249/473 (52%), Gaps = 25/473 (5%)

Query: 9   GVAHMVSQIVDQCIVPQR--FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD----DA 62
             + +    VD   V  R  F+V + GCQMNV+DS R+  +  S GY           D 
Sbjct: 11  RASKLAEPTVDTAPVRGRGVFYVHTLGCQMNVHDSERIAGVLESAGYVPATEEQYMDHDV 70

Query: 63  DLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSP 122
           DLIV+NTC +RE AAE++Y  +G    +K    +E  +L + V GC+AQ + E I  ++P
Sbjct: 71  DLIVMNTCAVRENAAERMYGTIGLWAEMK----RERPNLQIAVGGCMAQLDRERIAEKAP 126

Query: 123 IVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTI 182
            V+ V G +    LP+LL++AR             + F      D    R   V++++ I
Sbjct: 127 WVDAVFGTKNIGSLPQLLDQARVQGHAQVKVEEELNYFPSQLPTD----RASRVSSWVAI 182

Query: 183 QEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG 242
             GC+  CTFC+VP TRG E  R    ++ E R+ +D G  EITLLGQNVN++ G G+ G
Sbjct: 183 SVGCNNTCTFCIVPTTRGKEHDRRPGDILAEIRQCVDEGAKEITLLGQNVNSF-GYGI-G 240

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
           ++  FS LL +  EI+GL R+R+T+ HP   +D +I A  +   +M  LH P+QSGSDRI
Sbjct: 241 DRFAFSKLLRACGEIEGLERVRFTSPHPAAFTDDVIAAMAETPNVMHQLHFPLQSGSDRI 300

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           L++M R + + ++  I+ +IR   PD  IS+D IVGFPGET++DF+ TM +V++  ++ A
Sbjct: 301 LRAMRRSYRSAKFLDILRKIREAMPDAQISTDIIVGFPGETEEDFQETMRVVEEARFSSA 360

Query: 363 FSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422
           F+F YSPR GTP + M EQV  +V   R   L                G+ +EV++    
Sbjct: 361 FTFIYSPRPGTPAAEM-EQVPHDVVQNRFERLVALQERITEENLKIFEGRDVEVMVTGAS 419

Query: 423 KEKG----KLVGRSPWLQSVVLNSKN----HNIGDIIKVRITDVKISTLYGEL 467
             K     ++ GR      V +          +GD +   +T      L  + 
Sbjct: 420 GRKDAATHRVTGRERTGVLVHVGIPEGEPMPQVGDFVTATVTHAGRHNLIADP 472


>gi|224476684|ref|YP_002634290.1| putative radical SAM family protein [Staphylococcus carnosus subsp.
           carnosus TM300]
 gi|222421291|emb|CAL28105.1| putative radical SAM family protein [Staphylococcus carnosus subsp.
           carnosus TM300]
          Length = 448

 Score =  407 bits (1046), Expect = e-111,   Method: Composition-based stats.
 Identities = 137/445 (30%), Positives = 237/445 (53%), Gaps = 17/445 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
                + GC++N Y++  +  +F   GY+RV    +AD+ V+NTC +     +K    + 
Sbjct: 3   TVAFHTLGCKVNHYETEAIWQLFKDAGYDRVEFDTNADVFVINTCTVTNTGDKKSRQIIR 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R        I++  D +V V GC AQ    EI+   P V+VVVG Q   +L + +E  + 
Sbjct: 63  RA-------IRKNPDAVVCVTGCYAQTSSAEIM-EIPGVDVVVGTQDRTKLLDYIEEFKV 114

Query: 146 GKRVVDT--DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            ++ ++   +     K+E L +            A L IQEGC+ FCTFC++P+ RG+  
Sbjct: 115 ERQPINGVGNIMKNRKYEELEVP----YFTDRTRASLKIQEGCNNFCTFCIIPWARGLMR 170

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR   +VV++A  L+++G  EI L G +     G G D +    + LL  L  I GL R+
Sbjct: 171 SRDPEKVVEQATTLVNSGYKEIVLTGIHTG---GYGQDLKDYNLAQLLRDLETIDGLERI 227

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R ++     ++D +I    + + ++ +LH+P+QSGSD +LK M R+++   + + + ++ 
Sbjct: 228 RISSIEASQLTDEVINVISNSNKVVRHLHVPLQSGSDSVLKRMRRKYSMAHFSERLMKLH 287

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              P +A++SD IVGFPGET+++F+ T D + K  +++   F YS R GTP + M +Q+D
Sbjct: 288 EALPGLAVTSDVIVGFPGETEEEFQETYDFILKHHFSELHVFPYSARTGTPAARMDDQID 347

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
           E++K ER+  L +   +    +      +++EV+ E+ G+  G LVG +     V     
Sbjct: 348 ESIKNERVHKLIELSNQLAKEYASHFENEVLEVIPEEAGEAPGTLVGYADNYMKVEFEGD 407

Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468
           +  IG++++V+IT        G +V
Sbjct: 408 DSLIGELVRVKITQAGYPLNQGHVV 432


>gi|295091931|emb|CBK78038.1| SSU ribosomal protein S12P methylthiotransferase [Clostridium cf.
           saccharolyticum K10]
          Length = 446

 Score =  407 bits (1045), Expect = e-111,   Method: Composition-based stats.
 Identities = 140/448 (31%), Positives = 236/448 (52%), Gaps = 15/448 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC  N+ D+  M  +    GY   +  ++AD+I++NTC     A E+  + + 
Sbjct: 2   KILCVSLGCDKNLVDTEMMLGLLNRDGYTFTDDENEADVILINTCCFINDAKEESVNTIL 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +  LK    K+G    ++V GC+AQ   EEI++  P V+ ++G  TY  +  +L++A  
Sbjct: 62  EMAELK----KKGRCRALIVTGCMAQRYKEEIMQEIPEVDGILGTSTYDEISNVLKKALS 117

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G+  +   + +    +   +         G  AFL I EGCDK+CT+C++P  RG   S 
Sbjct: 118 GEEHISCFHELTALPD---VKAKRLVTTGGHYAFLKIAEGCDKYCTYCIIPSLRGPYRSV 174

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            + +++++AR+L + GV E+ L+ Q      G  L G+K    +LL  L+ I GL  +R 
Sbjct: 175 PMERLIEQARELTEQGVRELILVAQETT-LYGVDLYGKKM-LPELLRQLAAIDGLYWIRI 232

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
              +P ++++ LI+     + +  YL +P+Q  SDRILK MNR+ T  E ++ I R+R  
Sbjct: 233 QYCYPEEITEELIETIRTEEKICHYLDIPIQHASDRILKKMNRKTTMEELKRNIARLREA 292

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            PDIA+ +  I GFPGET +D    MD VD++ + +   F YS    TP ++  +QV + 
Sbjct: 293 IPDIALRTTLIAGFPGETKEDHELLMDFVDEMEFERLGVFAYSAEEDTPAASFPDQVPQE 352

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVLN 441
           +K ER   L +  +E     ++  VG+I++V+IE    ++   VGR+    P +  ++  
Sbjct: 353 IKEERRDALMELQQEIAFEKSERMVGRILDVMIEGKVADENAYVGRTYMDAPNVDGLIFV 412

Query: 442 SKNHNI--GDIIKVRITDVKISTLYGEL 467
           + +  +  GD  KVR+T      L GE+
Sbjct: 413 NTDEPLMSGDFCKVRVTGALDYDLIGEM 440


>gi|283797856|ref|ZP_06347009.1| RNA modification enzyme, MiaB family [Clostridium sp. M62/1]
 gi|291074547|gb|EFE11911.1| RNA modification enzyme, MiaB family [Clostridium sp. M62/1]
          Length = 446

 Score =  407 bits (1045), Expect = e-111,   Method: Composition-based stats.
 Identities = 140/448 (31%), Positives = 236/448 (52%), Gaps = 15/448 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC  N+ D+  M  +    GY   +  ++AD+I++NTC     A E+  + + 
Sbjct: 2   KILCVSLGCDKNLVDTEMMLGLLNRDGYTFTDDENEADVILINTCCFINDAKEESVNTIL 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +  LK    K+G    ++V GC+AQ   EEI++  P V+ ++G  TY  +  +L++A  
Sbjct: 62  EMAELK----KKGRCRALIVTGCMAQRYKEEIMQEIPEVDGILGTSTYDEISNVLKKALS 117

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G+  +   + +    +   +         G  AFL I EGCDK+CT+C++P  RG   S 
Sbjct: 118 GEEHISCFHELTALPD---VKAKRLVTTGGHYAFLKIAEGCDKYCTYCIIPSLRGPYRSV 174

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            + +++++AR+L + GV E+ L+ Q      G  L G+K    +LL  L+ I GL  +R 
Sbjct: 175 PMERLIEQARELTEQGVRELILVAQETT-LYGVDLYGKKM-LPELLRQLAAIDGLYWIRI 232

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
              +P ++++ LI+     + +  YL +P+Q  SDRILK MNR+ T  E ++ I R+R  
Sbjct: 233 QYCYPEEITEELIETIRTEEKICHYLDIPIQHASDRILKRMNRKTTMEELKRNIARLREA 292

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            PDIA+ +  I GFPGET +D    MD VD++ + +   F YS    TP ++  +QV + 
Sbjct: 293 IPDIALRTTLIAGFPGETKEDHELLMDFVDEMEFERLGVFAYSAEEDTPAASFPDQVPQE 352

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVLN 441
           +K ER   L +  +E     ++  VG+I++V+IE    ++   VGR+    P +  ++  
Sbjct: 353 IKEERRDALMELQQEIAFEKSERMVGRILDVMIEGKVADENAYVGRTYMDAPNVDGLIFV 412

Query: 442 SKNHNI--GDIIKVRITDVKISTLYGEL 467
           + +  +  GD  KVR+T      L GE+
Sbjct: 413 NTDEPLMSGDFCKVRVTGALDYDLIGEM 440


>gi|224283403|ref|ZP_03646725.1| hypothetical protein BbifN4_06194 [Bifidobacterium bifidum NCIMB
           41171]
          Length = 479

 Score =  407 bits (1045), Expect = e-111,   Method: Composition-based stats.
 Identities = 163/453 (35%), Positives = 249/453 (54%), Gaps = 23/453 (5%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDAD----LIVLNTCHIREKAAEKVYS 82
           F+V + GCQMNV+DS R+  +    GY        AD    LI++NTC +RE AAE++Y 
Sbjct: 26  FYVHTLGCQMNVHDSERIAGVLEDDGYIPATEEQAADKDVDLIIMNTCAVRENAAERMYG 85

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +G   +LK    +   ++ + + GC+AQ + + I +++P V+ V G +    LP LL++
Sbjct: 86  TIGLWADLK----RTHPNMQIAIGGCMAQLDRKRIAQKAPWVDAVFGTKNIGSLPRLLDQ 141

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           AR             D F     V     R   V+++++I  GC+  CTFC+VP TRG E
Sbjct: 142 ARMAGTCQVEVADKLDYFPSQLPV----ARASKVSSWVSISIGCNNTCTFCIVPTTRGKE 197

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
             R    ++ E R+ +D G  E+TLLGQNVN++ G G+ G++  FS LL +  +I+GL R
Sbjct: 198 HDRRPGDILAEIRRCVDEGAKEVTLLGQNVNSF-GYGI-GDRYAFSKLLRACGDIEGLER 255

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+T+ HP   +D +I A  +   +M  LH+P+QSGSD+IL++M R + + ++  I+ ++
Sbjct: 256 VRFTSPHPAAFTDDVIAAMAETPNVMHQLHMPLQSGSDKILRAMRRSYRSAKFLDILRKV 315

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R   PD  IS+D IVGFPGETD+DF ATMD+V +  +  AF+F+YSPR GTP + M EQV
Sbjct: 316 REAMPDAQISTDIIVGFPGETDEDFEATMDVVRQARFQSAFTFEYSPRPGTPAAEM-EQV 374

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKG---KLVGRSPWLQSV 438
              V  ER   L K   +          G+ +EV+I    GK+     ++ GR      V
Sbjct: 375 PHEVVQERFDRLVKLQEQITEEELAKFEGRDVEVMITGAQGKKDSATHRVTGRERTGVLV 434

Query: 439 VLNSKN----HNIGDIIKVRITDVKISTLYGEL 467
            +   +      IGD +   +T      L  + 
Sbjct: 435 HIGVPDGEPMPQIGDFVTATVTHAGRHNLIADP 467


>gi|206895928|ref|YP_002247164.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Coprothermobacter
           proteolyticus DSM 5265]
 gi|229890499|sp|B5Y8R7|MIAB_COPPD RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|206738545|gb|ACI17623.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Coprothermobacter
           proteolyticus DSM 5265]
          Length = 426

 Score =  407 bits (1045), Expect = e-111,   Method: Composition-based stats.
 Identities = 158/443 (35%), Positives = 242/443 (54%), Gaps = 23/443 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           ++++ +YGCQMN  DS  +  +  S G+E   ++ D+DL+V+NTC +R  A E+    + 
Sbjct: 2   KYYIFTYGCQMNKNDSEMVSGILKSSGWEEAKNVVDSDLVVINTCSVRLHAEERAIGTIS 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            ++ L            VVV GC+++  G EI+ R P V  V+GP         +     
Sbjct: 62  ALKKLGKK---------VVVMGCMSEVRGNEIMSRFPHVQAVLGPS----YEAHILDVLN 108

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G+R +       D FE+ S      NRK   + +++I +GCD FCT+C+VP+TRG   SR
Sbjct: 109 GERRILVGDEKVD-FEKYSSA----NRKEKHSVYVSIMKGCDDFCTYCIVPFTRGRVQSR 163

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
               +++E R  +DNG  EITLLGQNVN   GK L G    F  L+  ++ I G+ R+R+
Sbjct: 164 DPESILEEVRVCVDNGAVEITLLGQNVN-DYGKDLSG--WDFVSLVERVATIDGVRRIRF 220

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
            + HP +     I    +L  + PY HLP+QSG D IL+ MNR++T  E+ +++  IR  
Sbjct: 221 MSPHPANFKKDDITRLANLPQVAPYYHLPLQSGDDEILRRMNRKYTTGEFAELVGFIRES 280

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ-VDE 384
            P++AI +D IVGFPGE+D+ F+ T   ++K+ +   +   YSPR GT  +      V  
Sbjct: 281 VPNVAIGTDLIVGFPGESDEHFQNTFKFLEKMQFDVVYMAIYSPRPGTAAARQETSFVPA 340

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS-K 443
            V   R   L +   +   S N   VG + EVLI++  K  GK +GR+P  ++VV  S +
Sbjct: 341 EVAKARYDELLRLQEKISYSINQRYVGTLQEVLIDREDKTTGKFIGRTPTNKTVVFTSIR 400

Query: 444 NHNIGDIIKVRITDVKISTLYGE 466
           + + G+ + VRI + K   LYGE
Sbjct: 401 HVSPGEFVDVRINEAKSWVLYGE 423


>gi|115486105|ref|NP_001068196.1| Os11g0592800 [Oryza sativa Japonica Group]
 gi|110832794|sp|Q2R1U4|CK5P1_ORYSJ RecName: Full=CDK5RAP1-like protein
 gi|77551766|gb|ABA94563.1| CDK5RAP1, putative, expressed [Oryza sativa Japonica Group]
 gi|113645418|dbj|BAF28559.1| Os11g0592800 [Oryza sativa Japonica Group]
 gi|215694718|dbj|BAG89909.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222616254|gb|EEE52386.1| hypothetical protein OsJ_34478 [Oryza sativa Japonica Group]
          Length = 600

 Score =  407 bits (1045), Expect = e-111,   Method: Composition-based stats.
 Identities = 158/490 (32%), Positives = 249/490 (50%), Gaps = 49/490 (10%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGY-ERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           R + ++YGCQMNV D   +  +  ++GY E V   + A++I +NTC IR+ A +KV+  L
Sbjct: 94  RIYHETYGCQMNVNDMEIVLSIMKNEGYDEIVPDPESAEIIFINTCAIRDNAEQKVWQRL 153

Query: 85  GRIRNLKNSRI--------KEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL 136
                LK            +      + V GC+A+   E+IL    +V+VV GP  Y  L
Sbjct: 154 NYFWFLKRQWKANVAAGRSRSLRPPKIAVLGCMAERLKEKILDSDKMVDVVCGPDAYRDL 213

Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
           P LL+   +G++ ++T  S+E+ +  ++ V         VTAF++I  GC+  C+FC+VP
Sbjct: 214 PRLLQEVDYGQKGINTLLSLEETYADITPVRIS---DNSVTAFVSIMRGCNNMCSFCIVP 270

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL-----DGEKC------ 245
           +TRG E SR +S +V E  +L   GV E+ LLGQNVN++           G+        
Sbjct: 271 FTRGRERSRPVSSIVREVGELWKAGVKEVMLLGQNVNSYNDTSEVEELEPGKNWELSEGF 330

Query: 246 -----------TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP 294
                       F+DLL  LS     +R R+T+ HP+D  D L+    D   +   +H+P
Sbjct: 331 SSMCKVKNMGLRFADLLDQLSLEYPEMRFRFTSPHPKDYPDELLYLMRDRHNVCKLIHMP 390

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
            QSGS  +L+ M R +T   Y +++ +IRS+ PD+ +SSDFI GF GET+++   T+ LV
Sbjct: 391 AQSGSSAVLERMRRGYTREAYLELVQKIRSIIPDVGLSSDFISGFCGETEEEHAETLTLV 450

Query: 355 DKIGYAQAFSFKYSPRLGTPGSN-MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQI 413
             +GY  A+ F YS R  T      ++ V ++VK  RL  L    RE      D+ VG +
Sbjct: 451 RAVGYDMAYMFAYSMREKTHAHRNYVDDVPDDVKQRRLAELISTFRETTAKIYDSQVGTV 510

Query: 414 IEVLIEKHGKE--KGKLVGRSPWLQSV---------VLNSKNHN---IGDIIKVRITDVK 459
             VL+E   K   + +++G++     V                    +GD I+V+IT   
Sbjct: 511 QLVLVEGPNKRAPETEMIGKTDRGHRVSFASVPVPHTFEGDELRKPVVGDFIEVKITKSS 570

Query: 460 ISTLYGELVV 469
            ++L G+++ 
Sbjct: 571 TASLSGDVIA 580


>gi|330686099|gb|EGG97720.1| tRNA methylthiotransferase YqeV [Staphylococcus epidermidis VCU121]
          Length = 448

 Score =  407 bits (1045), Expect = e-111,   Method: Composition-based stats.
 Identities = 140/445 (31%), Positives = 235/445 (52%), Gaps = 17/445 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
                + GC++N Y++  +  +F    YERV+   +AD+ V+NTC +     +K    + 
Sbjct: 3   TVAFHTLGCKVNHYETEAIWQLFKEADYERVDFETNADVFVINTCTVTNTGDKKSRQIIR 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R        I++  D +V V GC AQ    EI+   P V+VVVG Q  ++L + ++  + 
Sbjct: 63  RA-------IRKNPDAVVCVTGCYAQTSSAEIM-EIPGVDVVVGTQDRHKLLDYIDEFQK 114

Query: 146 GKRVVDT--DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            ++ ++   +     K+E L +            A L IQEGC+ FCTFC++P+ RG+  
Sbjct: 115 ERQPINGVGNIMKNRKYEELDVP----YFTDRTRASLKIQEGCNNFCTFCIIPWARGLMR 170

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR   +VV++A  L++ G  EI L G +     G G D +    + LL  L ++ GL R+
Sbjct: 171 SRDPEKVVEQATTLVNAGYKEIVLTGIHTG---GYGQDLKNYNLAQLLRDLDQVDGLERI 227

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R ++     ++D +I      + ++ +LH+P+QSGSD +LK M R++T   + + I ++ 
Sbjct: 228 RISSIEASQLTDEVIDVLERSNKIVRHLHVPLQSGSDTVLKRMRRKYTMEHFSERITKLH 287

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              PD+AI+SD IVGFPGET+++F+ T D + K  +++   F YS R+GTP + M +Q+D
Sbjct: 288 EALPDVAITSDVIVGFPGETEEEFQETYDFIVKHKFSELHVFPYSSRIGTPAARMDDQID 347

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
           E +K ER+  L     +    +      +++EV+ E+ G++   LVG +     V     
Sbjct: 348 EEIKNERVHKLIALSDQLAKEYASKFEDEVLEVIPEEKGEKPNTLVGYADNYMKVEFEGS 407

Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468
              IG IIKV+I        YG+ +
Sbjct: 408 EDLIGQIIKVKIQKADYPLNYGKAI 432


>gi|310287756|ref|YP_003939014.1| RNA modification enzyme, MiaB family [Bifidobacterium bifidum S17]
 gi|309251692|gb|ADO53440.1| RNA modification enzyme, MiaB family [Bifidobacterium bifidum S17]
          Length = 479

 Score =  407 bits (1045), Expect = e-111,   Method: Composition-based stats.
 Identities = 163/453 (35%), Positives = 249/453 (54%), Gaps = 23/453 (5%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDAD----LIVLNTCHIREKAAEKVYS 82
           F+V + GCQMNV+DS R+  +    GY        AD    LI++NTC +RE AAE++Y 
Sbjct: 26  FYVHTLGCQMNVHDSERIAGVLEDDGYIPATEEQAADKDVDLIIMNTCAVRENAAERMYG 85

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +G   +LK    +   ++ + + GC+AQ + + I +++P V+ V G +    LP LL++
Sbjct: 86  TIGLWADLK----RTHPNMQIAIGGCMAQLDRKRIAQKAPWVDAVFGTKNIGSLPRLLDQ 141

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           AR             D F     V     R   V+++++I  GC+  CTFC+VP TRG E
Sbjct: 142 ARMAGTCQVEVADKLDYFPSQLPV----ARASKVSSWVSISIGCNNTCTFCIVPTTRGKE 197

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
             R    ++ E R+ +D G  E+TLLGQNVN++ G G+ G++  FS LL +  +I+GL R
Sbjct: 198 HDRRPGDILAEIRRCVDEGAKEVTLLGQNVNSF-GYGI-GDRYAFSKLLRACGDIEGLER 255

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+T+ HP   +D +I A  +   +M  LH+P+QSGSD+IL++M R + + ++  I+ ++
Sbjct: 256 VRFTSPHPAAFTDDVIAAMAETPNVMHQLHMPLQSGSDKILRAMRRSYRSAKFLDILRKV 315

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R   PD  IS+D IVGFPGETD+DF ATMD+V +  +  AF+F+YSPR GTP + M EQV
Sbjct: 316 REAMPDAQISTDVIVGFPGETDEDFEATMDVVRQARFQSAFTFEYSPRPGTPAAEM-EQV 374

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKG---KLVGRSPWLQSV 438
              V  ER   L K   +          G+ +EV+I    GK+     ++ GR      V
Sbjct: 375 PHEVVQERFDRLVKLQEQITEEELAKFEGRDVEVMITGAQGKKDSATHRVTGRERTGVLV 434

Query: 439 VLNSKN----HNIGDIIKVRITDVKISTLYGEL 467
            +   +      IGD +   +T      L  + 
Sbjct: 435 HIGVPDGEPMPQIGDFVTATVTHAGRHNLIADP 467


>gi|307718683|ref|YP_003874215.1| hypothetical protein STHERM_c09960 [Spirochaeta thermophila DSM
           6192]
 gi|306532408|gb|ADN01942.1| hypothetical protein STHERM_c09960 [Spirochaeta thermophila DSM
           6192]
          Length = 448

 Score =  407 bits (1045), Expect = e-111,   Method: Composition-based stats.
 Identities = 161/448 (35%), Positives = 260/448 (58%), Gaps = 13/448 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + ++V++YGCQMN  +S  +       G+ R ++ D+AD++VLNTC +R+ A E++   L
Sbjct: 2   RTYWVETYGCQMNKAESEALIRDLEEAGWGRASAPDEADVVVLNTCAVRQTAEERIAGRL 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-ERA 143
           G  R LK       G  ++V+ GC+A+   EE+L   P V+VVVG         LL ERA
Sbjct: 62  GYYRYLKK-----HGRFVLVLMGCMAERMKEEVLEAFPHVDVVVGTFQKKSFVRLLRERA 116

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
                +     + ED++    I   G     G  AF+ I  GC+ FC++C+VPY RG E+
Sbjct: 117 EDLTLLQQLLLTEEDEYSFEKIHHSG----PGFKAFVPIMHGCNNFCSYCIVPYVRGREV 172

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKGLVR 262
           SR  S++ +E   L++ GV EITLLGQNVN+      +G++  F+ LL  +      L  
Sbjct: 173 SRHPSEIFEEIEALLEKGVKEITLLGQNVNS-YRFTWEGKEVRFAGLLREIVHRFPELPW 231

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LR+ TSHP+D+SD LI+       +  +LHLPVQ GS+RIL +MNRR+T   Y  +++RI
Sbjct: 232 LRFLTSHPKDLSDELIEVMSASPSICKHLHLPVQHGSNRILGAMNRRYTREHYLNLVERI 291

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+  P IA+++D +VGFPGET++D   T+DL+ ++ +A A+++ Y+PR GT      + +
Sbjct: 292 RTAMPGIALTTDILVGFPGETEEDLELTLDLMRRVRFADAYTYYYNPRKGTRAYEWGDPI 351

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLN 441
              VK ERL  + +  RE  + +    +G++++VL+E+   K + +++ R+   + VV  
Sbjct: 352 PLEVKKERLDRVIRLQRELSLEWKQMRIGRMVDVLVEEVSRKREDEVLARTEQDEMVVFP 411

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELVV 469
           +    IG   +V++  ++ +T   E VV
Sbjct: 412 ASPERIGRFARVQLVSLEGNTFRAEEVV 439


>gi|219669148|ref|YP_002459583.1| MiaB-like tRNA modifying enzyme YliG [Desulfitobacterium hafniense
           DCB-2]
 gi|219539408|gb|ACL21147.1| MiaB-like tRNA modifying enzyme YliG [Desulfitobacterium hafniense
           DCB-2]
          Length = 442

 Score =  407 bits (1045), Expect = e-111,   Method: Composition-based stats.
 Identities = 131/452 (28%), Positives = 218/452 (48%), Gaps = 17/452 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + ++  V + GC  N  DS  M     ++ Y+ VN  + AD+I++NTC   E A  +   
Sbjct: 1   MNKKVAVVTLGCPKNQVDSEIMTGHMMTK-YQIVNEPEQADIIIINTCTFIESAKAESID 59

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            + ++   K      G    +V  GC+AQ  G+E+L   P ++ ++G      + E LE 
Sbjct: 60  MILQMSQYKEE----GQCQTLVATGCLAQRYGDELLAEIPELDGIMGTGNVAEILETLEE 115

Query: 143 ARFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           A   K R +  +       E +  V     +     A++ + EGCD +CT+C++P+ RG 
Sbjct: 116 AEKSKVRRISAEAPAFIYDETMPRVRLSPKQ----YAYVKVAEGCDNYCTYCIIPHVRGH 171

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
             SR+   ++ E   +   GV E+ L+ Q+     GK   GE      L+  ++ I+G+ 
Sbjct: 172 FRSRTQESILREVEAMASEGVKEVLLIAQDTT-RYGKDRYGE-YRLPSLIKEIAGIEGIE 229

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
            +R    +P   +D LI    +   +  YL LP+Q   D++L  MNRR T  E   +I +
Sbjct: 230 WIRLMYCYPELFTDELITVMKETPKVCRYLDLPLQHAHDKVLAEMNRRGTIREAEGLIHK 289

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R   PDI + +  I GFPGET+++F+A +D   KI + +  +F YS    TP +   +Q
Sbjct: 290 LRQEIPDIRLRTTMITGFPGETEEEFQAVVDFAKKIRFDRLGAFAYSQEESTPAAQREDQ 349

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK---GKLVGRSPWLQSV 438
           V E ++ +R   L +   +         VGQ ++VLIE+   ++   G+  G +P +  V
Sbjct: 350 VPEEIRQQRRDQLMELQHDIAYEQQQRWVGQTLKVLIEEALPDQRWVGRSEGDAPEIDGV 409

Query: 439 VLNS--KNHNIGDIIKVRITDVKISTLYGELV 468
           V         IGD + V+IT      L GE+V
Sbjct: 410 VYVDSPGELEIGDFVLVKITGADSYDLMGEVV 441


>gi|325680283|ref|ZP_08159843.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Ruminococcus albus 8]
 gi|324107992|gb|EGC02248.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Ruminococcus albus 8]
          Length = 465

 Score =  406 bits (1044), Expect = e-111,   Method: Composition-based stats.
 Identities = 165/445 (37%), Positives = 251/445 (56%), Gaps = 21/445 (4%)

Query: 28  FVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRI 87
           FV SYGCQ NV D  +++ M    GY+  +  D A LI+LNTC +RE A ++V+  +G  
Sbjct: 36  FVHSYGCQQNVSDGEKIKGMLAKVGYDFTDDTDSAQLILLNTCAVRENAEDRVFGNIGNF 95

Query: 88  RNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELL-ERAR 144
           + LK        +L++ + GC+AQ +   E+I      V++V G   Y  +  +L E   
Sbjct: 96  KKLKEQ----NRELVIGICGCMAQQKHVAEKIKASYRQVDLVFGTFAYNDMYSMLWEVIS 151

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
             KR+ +   +  +  E ++       R+  V AFL I  GC+ FCT+C+VPY RG E S
Sbjct: 152 KHKRLFNQSEACTEIDESMT-----QLREDKVRAFLPIMYGCNNFCTYCIVPYVRGRERS 206

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R    V+ E R L++ G  EITLLGQNVN++        +  F  LL  + +I+G  R+R
Sbjct: 207 RKPEAVIAEVRSLVEQGYKEITLLGQNVNSY--------EYGFPALLREIDKIEGKYRIR 258

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           + +SHP+D +  LI A  D + +  +LHLPVQ+GS+R+LK+MNRR+T  +Y ++ID  RS
Sbjct: 259 FMSSHPKDATKELIDAIIDCEHVCTHLHLPVQAGSNRVLKAMNRRYTVEKYMEMIDYARS 318

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             PD + ++D IVGFPGET ++F  T +++ ++ Y   +SF YS R GTP +   + V +
Sbjct: 319 RVPDFSFTTDLIVGFPGETYEEFCETKEVIKRVKYDNIYSFVYSRRSGTPAAKFEDHVTD 378

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRSPWLQSVVLNSK 443
             K   L  L  + RE    +    VG+ +EVL+E  G+  +G L G++     V + + 
Sbjct: 379 KQKGLWLRELLLEQREITSEWFGRFVGRTVEVLVEGEGRTGEGWLTGKNDENIIVEVKAD 438

Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468
              IG+ ++VRIT      L GELV
Sbjct: 439 KKYIGEFVRVRITKAMNWALSGELV 463


>gi|313140558|ref|ZP_07802751.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB
           41171]
 gi|313133068|gb|EFR50685.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB
           41171]
          Length = 480

 Score =  406 bits (1044), Expect = e-111,   Method: Composition-based stats.
 Identities = 163/453 (35%), Positives = 249/453 (54%), Gaps = 23/453 (5%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDAD----LIVLNTCHIREKAAEKVYS 82
           F+V + GCQMNV+DS R+  +    GY        AD    LI++NTC +RE AAE++Y 
Sbjct: 27  FYVHTLGCQMNVHDSERIAGVLEDDGYIPATEEQAADKDVDLIIMNTCAVRENAAERMYG 86

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +G   +LK    +   ++ + + GC+AQ + + I +++P V+ V G +    LP LL++
Sbjct: 87  TIGLWADLK----RTHPNMQIAIGGCMAQLDRKRIAQKAPWVDAVFGTKNIGSLPRLLDQ 142

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           AR             D F     V     R   V+++++I  GC+  CTFC+VP TRG E
Sbjct: 143 ARMAGTCQVEVADKLDYFPSQLPV----ARASKVSSWVSISIGCNNTCTFCIVPTTRGKE 198

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
             R    ++ E R+ +D G  E+TLLGQNVN++ G G+ G++  FS LL +  +I+GL R
Sbjct: 199 HDRRPGDILAEIRRCVDEGAKEVTLLGQNVNSF-GYGI-GDRYAFSKLLRACGDIEGLER 256

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+T+ HP   +D +I A  +   +M  LH+P+QSGSD+IL++M R + + ++  I+ ++
Sbjct: 257 VRFTSPHPAAFTDDVIAAMAETPNVMHQLHMPLQSGSDKILRAMRRSYRSAKFLDILRKV 316

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R   PD  IS+D IVGFPGETD+DF ATMD+V +  +  AF+F+YSPR GTP + M EQV
Sbjct: 317 REAMPDAQISTDIIVGFPGETDEDFEATMDVVRQARFQSAFTFEYSPRPGTPAAEM-EQV 375

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKG---KLVGRSPWLQSV 438
              V  ER   L K   +          G+ +EV+I    GK+     ++ GR      V
Sbjct: 376 PHEVVQERFDRLVKLQEQITEEELAKFEGRDVEVMITGAQGKKDSATHRVTGRERTGVLV 435

Query: 439 VLNSKN----HNIGDIIKVRITDVKISTLYGEL 467
            +   +      IGD +   +T      L  + 
Sbjct: 436 HIGVPDGEPMPQIGDFVTATVTHAGRHNLIADP 468


>gi|257068238|ref|YP_003154493.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Brachybacterium faecium
           DSM 4810]
 gi|256559056|gb|ACU84903.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Brachybacterium faecium
           DSM 4810]
          Length = 533

 Score =  406 bits (1044), Expect = e-111,   Method: Composition-based stats.
 Identities = 161/458 (35%), Positives = 253/458 (55%), Gaps = 28/458 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDA-----DLIVLNTCHIREKAAEKV 80
            + V+++GCQMNV+DS R+  M    GY    +  DA     D++V NTC +RE AA K+
Sbjct: 26  TYQVRTFGCQMNVHDSERLTGMLEDSGYVAAPADADARKGEVDVLVFNTCAVRENAANKL 85

Query: 81  YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140
           Y  LG +R  K++       + + V GC+AQ +   I+ R+P V+VV G      LP LL
Sbjct: 86  YGTLGGLRPGKDA----NPGMQIAVGGCLAQKDRAAIVERAPWVDVVFGTHNIGSLPVLL 141

Query: 141 ERARFG-KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           +RAR   +  V+   S+E     L        R+    A+++I  GC+  CTFC+VP  R
Sbjct: 142 DRARHNAEAQVEILESLEVFPSTLPT-----RRESAYAAWVSISVGCNNTCTFCIVPSLR 196

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G E  R    V+ E R ++D+G  E+TLLGQNVN++  +   G++  F+ LL +  EI G
Sbjct: 197 GKEKDRRPGDVLAEVRDVVDSGAIEVTLLGQNVNSYGVEF--GDRGAFAKLLRACGEIDG 254

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           L R+R+T+ HP   +D +I A  +   +MP LH+P+QSGSD++L+ M R + + ++  I+
Sbjct: 255 LERVRFTSPHPAMFTDDVIDAMAETPNVMPQLHMPLQSGSDKVLRRMRRSYRSRKFLGIL 314

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
           +R+R   P+ AI++D IVGFPGET+DDF+ T+++V+   ++ AF+F+YS R GTP + M 
Sbjct: 315 ERVRERIPEAAITTDIIVGFPGETEDDFQRTLEVVEASRFSSAFTFQYSIRPGTPAATMD 374

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKG---KLVGRSPWL 435
            Q+ + V  ER   L +         N A  G+ +E+L+ E  G       +L GR+   
Sbjct: 375 GQLPKEVVQERFERLIELQDRITFEENRALEGRAVEILVAEGEGARDAQTHRLSGRARDH 434

Query: 436 QSVVL-------NSKNHNIGDIIKVRITDVKISTLYGE 466
           + V          ++    GD++   +T      L  +
Sbjct: 435 RLVHFALPEGFPEAERPRPGDLVTATVTRAAPYYLIAD 472


>gi|226311621|ref|YP_002771515.1| hypothetical protein BBR47_20340 [Brevibacillus brevis NBRC 100599]
 gi|226094569|dbj|BAH43011.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599]
          Length = 452

 Score =  406 bits (1044), Expect = e-111,   Method: Composition-based stats.
 Identities = 148/449 (32%), Positives = 242/449 (53%), Gaps = 21/449 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSM-DDADLIVLNTCHIREKAAEKVYSFL 84
                + GC++N Y++  +  +F + GYERV+   +DAD+ V+NTC +     +K    +
Sbjct: 3   TVAFHTLGCKVNSYETEAIWQLFKADGYERVDFEQEDADVYVINTCTVTNTGDKKSRQVI 62

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R        I+   + +V V GC AQ    EI  + P V++VVG Q   +L E +++ R
Sbjct: 63  RRA-------IRRNPEAIVAVTGCYAQTSPSEIA-QIPGVDIVVGTQGREKLIEYVDQIR 114

Query: 145 FGKRVVDTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
             +  ++   ++     FE L +     N      A L IQEGC+ FCTFC++P+ RG+ 
Sbjct: 115 AERTPINAVGNIMKARDFEELDVP----NFTDRTRASLKIQEGCNNFCTFCIIPWARGLM 170

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR    VV++A+KL++ G  EI L G +     G G D E    + LL  L +++GL R
Sbjct: 171 RSRKPESVVEQAQKLVEAGYLEIVLTGIHTG---GYGEDLEDYNLAKLLIDLHQVEGLKR 227

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R ++     ++D +I+   + D ++ +LH+P+Q+G D +LK M R++T  E+ + + ++
Sbjct: 228 IRISSIEASQITDEVIEVINNSDRVVRHLHVPLQAGDDEVLKRMRRKYTTAEFYERMVKV 287

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R   P  AI++D IVGFPGET++ F    + + KIG+A+   F YS R GTP + M +Q+
Sbjct: 288 REALPGAAITTDVIVGFPGETEEQFWNGYEFMKKIGFAEMHVFPYSMRTGTPAARMTDQI 347

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE---KGKLVGRSPWLQSVV 439
            E  K ER+  L +  +E  ++++   VG ++EV+ E+  KE    G L+G S    +VV
Sbjct: 348 PEEEKNERVAKLLELNQELTLAYSKKFVGDVLEVIPERPFKEAPDSGLLMGYSDNYLNVV 407

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG I KVR+ +       G  V
Sbjct: 408 FPGDESMIGKICKVRLDEPGSEYCKGTFV 436


>gi|154686803|ref|YP_001421964.1| YqeV [Bacillus amyloliquefaciens FZB42]
 gi|154352654|gb|ABS74733.1| YqeV [Bacillus amyloliquefaciens FZB42]
          Length = 451

 Score =  406 bits (1044), Expect = e-111,   Method: Composition-based stats.
 Identities = 137/449 (30%), Positives = 233/449 (51%), Gaps = 21/449 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
                + GC++N Y++  +  +F   GYER      AD+ V+NTC +     +K    + 
Sbjct: 3   TVAFHTLGCKVNHYETEAIWQLFKDAGYERKEFEQTADVYVINTCTVTNTGDKKSRQVIR 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R        I++  D ++ V GC AQ    EI+   P V++VVG Q   ++   +E+ R 
Sbjct: 63  RA-------IRQNPDGVICVTGCYAQTSPAEIMA-IPGVDIVVGTQDREKMLGYIEQYRE 114

Query: 146 GKRVVDTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            ++ ++   ++     FE L +            A L IQEGC+ FCTFC++P+ RG+  
Sbjct: 115 ERQPINGVGNIMKARVFEELDVP----AFTDRTRASLKIQEGCNNFCTFCIIPWARGLLR 170

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS-EIKGLVR 262
           SR   +V+ +A++L+D G  EI L G +     G G D +   F+ LL  L   ++GL R
Sbjct: 171 SRDPEEVIKQAQQLVDAGYKEIVLTGIHTG---GYGEDMKDYNFAKLLRELDTRVEGLKR 227

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R ++     ++D +I+     D ++ +LH+P+QSGS+ +LK M R++T   +   ++++
Sbjct: 228 IRISSIEASQITDEVIEVLDASDKIVRHLHIPIQSGSNTVLKRMRRKYTMEFFADRLNKL 287

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           +   P +A++SD IVGFPGET+++F  T   + +  +++   F YS R GTP + M +QV
Sbjct: 288 KEALPGLAVTSDVIVGFPGETEEEFMETYRFIKEHKFSELHVFPYSKRTGTPAARMEDQV 347

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK---HGKEKGKLVGRSPWLQSVV 439
           DENVK ER+  L     +    +     G+++E++ E+      E+G  VG +     VV
Sbjct: 348 DENVKNERVHKLIALSDQLAKEYASDYEGEVLEIIPEEAFKESDEEGMFVGYTDNYMKVV 407

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG ++KV+I         G+ V
Sbjct: 408 FKGTEDVIGKLVKVKIQKAGYPYNEGQFV 436


>gi|148981402|ref|ZP_01816398.1| hypothetical protein VSWAT3_09558 [Vibrionales bacterium SWAT-3]
 gi|145960894|gb|EDK26224.1| hypothetical protein VSWAT3_09558 [Vibrionales bacterium SWAT-3]
          Length = 432

 Score =  406 bits (1044), Expect = e-111,   Method: Composition-based stats.
 Identities = 176/407 (43%), Positives = 256/407 (62%), Gaps = 11/407 (2%)

Query: 64  LIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPI 123
           +++LNTC IREKA EKV+  LGR + LK+ +      +   V    A  EG+ I +R+P 
Sbjct: 1   VLLLNTCSIREKAQEKVFHQLGRWKTLKDKKEGVVIGVGGCV----ATQEGDHIRQRAPY 56

Query: 124 VNVVVGPQTYYRLPELLERARFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTI 182
           V+V+ GPQT +RLPE+++ +   +  V+D  +   +KF+ L        R  G TAF++I
Sbjct: 57  VDVIFGPQTLHRLPEMIKSSLSNEAPVMDISFPEIEKFDSLP-----EPRAEGATAFVSI 111

Query: 183 QEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG 242
            EGC K+CT+CVVPYTRG E+SR +  V+ E  +L + GV E+ LLGQNVNA+RG   +G
Sbjct: 112 MEGCSKYCTYCVVPYTRGEEVSRPMDDVLFEVAQLAEQGVREVNLLGQNVNAYRGPTHEG 171

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
           + CTF++LL  ++ I G+ R+R+TTSHP +  D +I  + D   L+ +LHLPVQSGSDRI
Sbjct: 172 DICTFAELLRLVASIDGIDRIRFTTSHPLEFGDDIIAVYEDTPELVSFLHLPVQSGSDRI 231

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           L  M R HTA EY+ II ++R  RPDI ISSDFIVGFPGE++ DF+ TM L+ ++ +  +
Sbjct: 232 LTMMKRPHTAIEYKSIIRKLRKARPDIQISSDFIVGFPGESNQDFQDTMKLIKEVDFDMS 291

Query: 363 FSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422
           FSF +SPR GTP ++    V E  K +RL  LQ+ +  Q + ++   +G    VL+E   
Sbjct: 292 FSFIFSPRPGTPAADYPCDVPEQEKKDRLYELQQTVNTQAMRYSRLMLGTEQRVLVEGPS 351

Query: 423 KEK-GKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           K+   +L  R+   + V        IG  + V+IT+V  ++L GE+V
Sbjct: 352 KKNLMELRARTENSRVVNFEGSADLIGQFVDVKITEVFANSLRGEVV 398


>gi|322383639|ref|ZP_08057390.1| ribosomal protein S12 methylthiotransferase-like protein
           [Paenibacillus larvae subsp. larvae B-3650]
 gi|321151851|gb|EFX44794.1| ribosomal protein S12 methylthiotransferase-like protein
           [Paenibacillus larvae subsp. larvae B-3650]
          Length = 446

 Score =  406 bits (1044), Expect = e-111,   Method: Composition-based stats.
 Identities = 139/446 (31%), Positives = 237/446 (53%), Gaps = 20/446 (4%)

Query: 28  FVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRI 87
              + GC++N YD+  +  +F ++GYE+ +    AD+ V+NTC +     +K    + R 
Sbjct: 2   AFHTLGCKVNFYDTEAIWQLFKAEGYEQTDFEKTADVYVINTCTVTNTGDKKSRQMIRRA 61

Query: 88  RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147
                  ++   D ++ V GC AQ    EI+   P V++V+G Q   ++   +++    +
Sbjct: 62  -------VRRNPDAIIAVTGCYAQTSPAEIM-EIPGVDLVIGTQDREKIVPYVKQIESER 113

Query: 148 RVVDTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           + ++   ++     FE L + D          AFL IQEGC+ FCTFC++P++RG+  SR
Sbjct: 114 QPINAVRNIMKTRQFEELDVPD----FADRTRAFLKIQEGCNNFCTFCIIPWSRGLMRSR 169

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
               VV +A  L+D G  EI L G +     G G D E  + + LL+ L ++ GL R+R 
Sbjct: 170 DPKSVVQQAHMLVDAGYKEIVLTGIHTG---GYGEDMEDYSLAKLLWDLDKVDGLERIRI 226

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
           ++     ++D +++     D +  +LH+P+Q+G DR+LK M R++T  EY + I+ I   
Sbjct: 227 SSIEASQITDEVLEVLNASDKMCRHLHIPLQAGDDRVLKRMRRKYTTEEYGRKIELIHKA 286

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P +AI++D IVGFPGET++ F  +   ++++ Y++   F YS R GTP + M +Q+DE 
Sbjct: 287 MPGVAITTDVIVGFPGETEEMFENSYRFMEQMKYSEMHVFPYSKRTGTPAARMEDQIDEE 346

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK---EKGKLVGRSPWLQSVVLNS 442
           +K  R+  L       Q+ +     GQ +EV+ E+  K     G ++G S     +V   
Sbjct: 347 IKNARVHRLIDLSERMQLDYARQHEGQALEVIPEREYKGAEGSGLVMGYSDNYIQLVFEG 406

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
               IG I +V++T+  I+   G+LV
Sbjct: 407 SEQLIGQICRVKLTEPGINESRGQLV 432


>gi|269926079|ref|YP_003322702.1| RNA modification enzyme, MiaB family [Thermobaculum terrenum ATCC
           BAA-798]
 gi|269789739|gb|ACZ41880.1| RNA modification enzyme, MiaB family [Thermobaculum terrenum ATCC
           BAA-798]
          Length = 432

 Score =  406 bits (1044), Expect = e-111,   Method: Composition-based stats.
 Identities = 156/447 (34%), Positives = 244/447 (54%), Gaps = 24/447 (5%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           +    F++ + GCQMNV DS R  D     GY+  N   +AD+I+LNTC +RE A  + +
Sbjct: 1   MPGNTFYIWTVGCQMNVADSRRAADALKHSGYKETNKPSEADVIILNTCSVRESAERRTW 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LG +  LK    ++  D ++V+ GC+  ++   + R+ P+V+  V         ELL 
Sbjct: 61  GKLGALSQLK----RQRPDTIIVMMGCMVHSDTALLHRQFPLVDHFVPAGDID---ELLA 113

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
                        S+    +         +   GVTAF+ +  GC+KFCTFCVVPY RG 
Sbjct: 114 -------------SIPPVEDEWGTQLYDLSSASGVTAFVPVIMGCNKFCTFCVVPYRRGR 160

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E S  +  VV+E R L D GV E+TLLGQ +N   GK L   +   +DLLY++ E+ G+ 
Sbjct: 161 ERSIPIPDVVEEVRFLADRGVKEVTLLGQTIN-HYGKDLP-NRPDLADLLYAVHEVPGIE 218

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+ TS+PR M+D ++ A  DL  +  ++++P Q+G + +L++M R +T  +Y  +IDR
Sbjct: 219 RIRFLTSYPRTMTDKILHAVADLPKVCEHINIPFQAGDNDVLRAMRRGYTIEQYIDLIDR 278

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +RS+ P ++I++D IVGFP ET++ F+ T D+++++   Q     YSPR GT    M + 
Sbjct: 279 VRSIIPGVSIATDIIVGFPNETEEKFQKTYDVLEQLRLDQVHIACYSPRPGTKAYEMGDP 338

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           +    K  R   L+++        N    G I EVL E+  K+KGK  GR+   + V ++
Sbjct: 339 IPLEEKQRRFRILEEQHERISAEINKQLEGTIQEVLFEE--KQKGKWKGRTRTNKLVFVD 396

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
           S+    G  + VRIT     ++  ELV
Sbjct: 397 SEEDLTGKTLPVRITHTTAWSMQAELV 423


>gi|314923002|gb|EFS86833.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes
           HL001PA1]
          Length = 492

 Score =  406 bits (1044), Expect = e-111,   Method: Composition-based stats.
 Identities = 162/466 (34%), Positives = 258/466 (55%), Gaps = 24/466 (5%)

Query: 13  MVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYE---RVNSMDDADLIVLNT 69
           M +  +     P  + V +YGCQMNV+DS R+  +    GY    R +++  AD++V NT
Sbjct: 1   MPNNTLQHTEAP-TYRVVTYGCQMNVHDSERIAGLLEEAGYVPDPRTDTLAPADVVVFNT 59

Query: 70  CHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG 129
           C +RE A  ++Y  LG +  +K++       + + V GC+AQ + + ++ R+P V+VV G
Sbjct: 60  CAVRENADNRLYGTLGHMAAVKSAH----PGMQLAVGGCMAQKDKDTVVARAPWVDVVFG 115

Query: 130 PQTYYRLPELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
                 LP LL+RAR      V+ + S+      L        R    +A+++I  GC+ 
Sbjct: 116 THNVGSLPVLLKRARHNATAQVEIEESLVTFPSNLP-----ARRDSAYSAWVSISVGCNN 170

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS 248
            CTFC+VP  RG E  R   +++ E R L+D GV EITLLGQNVN++  +   G++  F+
Sbjct: 171 TCTFCIVPQLRGKETDRRPGEILSEIRALVDEGVQEITLLGQNVNSYGVQF--GDRGAFA 228

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
            LL +   I GL R+R+T+ HP   +D +I+A  +   +MP LH+P+QSGSD +L+ M R
Sbjct: 229 KLLRACGNIDGLERVRFTSPHPAAFTDDVIEAMAETPNVMPSLHMPLQSGSDEVLRRMRR 288

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
            + + ++  I+DR+R   P  AI++D IVGFPGETD DF  TM +V++  ++ AF+F+YS
Sbjct: 289 SYRSTKFLGILDRVREAIPHAAITTDIIVGFPGETDKDFAETMRIVEESRFSAAFTFQYS 348

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKG- 426
            R  TP   M +QV + V  ER   L + + +     N A +G+ +EV+  +  G++   
Sbjct: 349 IRPNTPAGVMEDQVPKPVVQERYEQLVELVDDIAWQENKAQIGRAVEVMFAQGEGRKDEA 408

Query: 427 --KLVGRSPWLQSVVL---NSKN-HNIGDIIKVRITDVKISTLYGE 466
             ++ GR+   + V +      +    GDI +V IT      L  +
Sbjct: 409 THRVTGRARDNRLVHVSLNPGDDVPRPGDIGEVVITSGHPHDLVAD 454


>gi|302344087|ref|YP_003808616.1| RNA modification enzyme, MiaB family [Desulfarculus baarsii DSM
           2075]
 gi|301640700|gb|ADK86022.1| RNA modification enzyme, MiaB family [Desulfarculus baarsii DSM
           2075]
          Length = 447

 Score =  406 bits (1044), Expect = e-111,   Method: Composition-based stats.
 Identities = 165/443 (37%), Positives = 246/443 (55%), Gaps = 14/443 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +  + ++GCQMN YDS RM  M    GY        ADL++ NTC +R+KA +K+YS LG
Sbjct: 9   KAHIATFGCQMNEYDSARMARMLGQMGYIAEADPQKADLVIFNTCSVRDKAEQKLYSALG 68

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +  +K        DL++ V GCVAQ EG  +LRR   ++ V+G     +LPEL+  A  
Sbjct: 69  PLVKIKRQ-----RDLIIGVTGCVAQQEGRRLLRRVAHLDFVLGTAQIDKLPELVHDAAK 123

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G R  +       +   + +         G++A +T+  GCD FC++CVVPY RG E SR
Sbjct: 124 GLRRAELSLKRASEPAPIVLPPQV-----GLSANVTVMRGCDNFCSYCVVPYVRGREQSR 178

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
              QV++E   L+  G  E+ LLGQNV+++R     G    F++LL   + ++GL R+R+
Sbjct: 179 PADQVLEEIAALVAAGAREVVLLGQNVDSYRD---PGRGIGFAELLRLAAGVEGLWRVRF 235

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
            TSHP+D+S  LI+       +M  +HLP+QSG D +L +MNR +T  +Y   ++ +R  
Sbjct: 236 LTSHPKDLSPELIETLAAEPKVMEQMHLPIQSGDDSVLAAMNRGYTTGQYLAKVEALRRA 295

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P++ +  D IVGFPGE+ D F  T++LV+++GY   F F YS R  T  S M  ++D++
Sbjct: 296 APEVTLGGDIIVGFPGESADAFARTLELVERVGYDTLFCFIYSDRPFTKASRMTGKIDQD 355

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNSKN 444
           VKA R+  L +  R      N A VG I EVL+E   K+  G L GR     +V    + 
Sbjct: 356 VKASRVNQLLELHRRLGRERNRARVGTIREVLVEGPAKKGQGMLAGRDRGGLAVNFAGEA 415

Query: 445 HNIGDIIKVRITDVKISTLYGEL 467
             +G I +V +T    ++L G L
Sbjct: 416 ALVGTIQRVLVTQGLTNSLIGRL 438


>gi|123966699|ref|YP_001011780.1| 2-methylthioadenine synthetase [Prochlorococcus marinus str. MIT
           9515]
 gi|229890602|sp|A2BY12|MIAB_PROM5 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|123201065|gb|ABM72673.1| 2-methylthioadenine synthetase [Prochlorococcus marinus str. MIT
           9515]
          Length = 464

 Score =  406 bits (1044), Expect = e-111,   Method: Composition-based stats.
 Identities = 172/472 (36%), Positives = 264/472 (55%), Gaps = 28/472 (5%)

Query: 13  MVSQIVDQCIVPQ-----RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVL 67
           +   I ++   P+      +++ ++GCQMN  DS RM       GY R      ADL++ 
Sbjct: 2   LTKTIQEEKKTPKDESIGSYWITTFGCQMNKADSERMAGTLEKMGYSRAIDELKADLVLY 61

Query: 68  NTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVV 127
           NTC IR+ A +KVYSFLGR    K+S  K    L +VVAGC+AQ EGE +LRR P ++++
Sbjct: 62  NTCTIRDSAQQKVYSFLGRQIKRKHSLPK----LKLVVAGCLAQQEGESLLRRVPELDLI 117

Query: 128 VGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCD 187
           +GPQ    L  LLER   G +VV T    E+ F    I      R   +  ++ I  GC+
Sbjct: 118 MGPQHVNNLENLLERVDSGNQVVAT----EETFISEDIT--NARRDSTICGWVNIIYGCN 171

Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL-----DG 242
           + C++CVVP  RG E SR    +  E + L  N   EITLLGQN++A  G+ L     +G
Sbjct: 172 ERCSYCVVPSVRGKEQSRYPKAIKSEIQTLAQNNYKEITLLGQNIDA-YGRDLPVTTKEG 230

Query: 243 EK-CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
            K  T +DLLY + ++ G+ R+R++TSHP+  S  LIKA  +LD +  + H+P QSG+D 
Sbjct: 231 RKENTLTDLLYFIHDVDGIRRIRFSTSHPKYFSKRLIKACYELDKVCEHFHIPFQSGNDE 290

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
           IL+ M R +T  +Y++II+ IRS+ P+ +I++D IV FPGET+  ++ T+ L+  +G+ Q
Sbjct: 291 ILRLMARGYTIDKYKKIIENIRSLMPNASITADAIVAFPGETEKQYQDTLRLISDVGFDQ 350

Query: 362 AFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK- 420
             +  YSPR  TP +    Q+ E VK ERL  + + +       N   +     VLIE  
Sbjct: 351 VMTAAYSPRPNTPAAIWNNQIAEEVKKERLKEINELVEATSRKRNQRYLNNTESVLIEGL 410

Query: 421 HGKEKGKLVGRSPWLQSVVLNSKN-----HNIGDIIKVRITDVKISTLYGEL 467
           + K   +++GR+   +   +         ++ GD + V+IT+ +  +L G++
Sbjct: 411 NPKNSMQMMGRTRTNRLTFVEIPENIEFNYSFGDELNVKITEARSFSLSGQI 462


>gi|260789490|ref|XP_002589779.1| hypothetical protein BRAFLDRAFT_125887 [Branchiostoma floridae]
 gi|229274962|gb|EEN45790.1| hypothetical protein BRAFLDRAFT_125887 [Branchiostoma floridae]
          Length = 514

 Score =  406 bits (1044), Expect = e-111,   Method: Composition-based stats.
 Identities = 157/489 (32%), Positives = 249/489 (50%), Gaps = 47/489 (9%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ + ++YGCQMNV D+     +    GY+R  S++DAD+I+  TC IRE A +K+++ L
Sbjct: 6   RKVYFETYGCQMNVSDTEIAWSVLKDSGYQRTESVNDADVILAVTCAIRENAEQKIWTRL 65

Query: 85  GRIRNLKNSRIKE--------GGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL 136
              R +K  R K         G +  V +  C+A+   +++L R   V+++ GP  Y  L
Sbjct: 66  QEFRAMKTRRNKSRPLKVGVLGKENCVDILRCMAERLKKDLLEREKSVDLIAGPDAYRDL 125

Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
           P LL     G++  +   S+++ +  +  V          TAF++I  GCD  C++C+VP
Sbjct: 126 PRLLSVTESGQQAANVVLSLDETYADVMPVRMNAG---APTAFVSIMRGCDNMCSYCIVP 182

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR------------------GK 238
           +TRG E SR +  +++E R L   GV E+TLLGQNVN++R                  G 
Sbjct: 183 FTRGRERSRPIKSILEEVRALSGQGVKEVTLLGQNVNSYRDMSEQQHQLADSPTNLSAGF 242

Query: 239 GLDGEKC----TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP 294
           G    K      FS LL  ++++   +R+R+ + HP+D  D +++   D   +  +LHLP
Sbjct: 243 GTIYRKKKGGLRFSALLDRVAQVDPEMRIRFVSPHPKDFPDEVLQLIRDRPNICNHLHLP 302

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
            QSGS ++L+SM R HT   Y +++  ++ V PD+++SSDFIVGF GET+DD   T+ L 
Sbjct: 303 AQSGSSQVLQSMRRNHTREAYLELVQHVKKVIPDVSLSSDFIVGFCGETEDDHNQTLSLA 362

Query: 355 DKIGYAQAFSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQI 413
             + Y  A+ F YS R  T     +++ V  +VK  RL  L    R+     N   +GQ+
Sbjct: 363 RLVRYDNAYLFAYSMRKKTHAYHKLMDDVPADVKQRRLAELINVCRQGMAEANAEKIGQV 422

Query: 414 IEVLIEKHGKEK-GKLVGRSPWLQSVVLN------------SKNHNIGDIIKVRITDVKI 460
             VL+E   K+    L GR+     V++             S     GD + V+IT    
Sbjct: 423 HLVLVEGVSKKSASDLAGRNDGNTKVIIPNMDIPDEVGGQKSSPMKTGDYVAVKITSYTS 482

Query: 461 STLYGELVV 469
             L G  + 
Sbjct: 483 QVLKGIPLA 491


>gi|317968047|ref|ZP_07969437.1| 2-methylthioadenine synthetase [Synechococcus sp. CB0205]
          Length = 477

 Score =  406 bits (1043), Expect = e-111,   Method: Composition-based stats.
 Identities = 135/467 (28%), Positives = 223/467 (47%), Gaps = 26/467 (5%)

Query: 13  MVSQIVDQC--IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC 70
           + S + D       +       GC+ N  D+  M  +    GY       DA+++V+NTC
Sbjct: 9   LTSSMTDSARPSTGKTVAFAHLGCEKNRIDTEHMLGLLAEAGYGVSADEADANVVVVNTC 68

Query: 71  HIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGP 130
              + A E+    L  +               +++AGC+AQ   EE+L   P    +VG 
Sbjct: 69  SFIQDAREESVRTLVELAEQGKE---------LIIAGCLAQHFQEELLESLPEAKAIVGT 119

Query: 131 QTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190
             Y  +  +LER   G+RV     +     +        Y       A+L + EGCD  C
Sbjct: 120 GDYQHIVSVLERVEAGERVNQVSANPTFVGDENLP---RYRTTSEAVAYLKVAEGCDYRC 176

Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDL 250
            FC++P+ RG + SR++  +V EAR+L   GV E+ L+ Q +    G  L G K   ++L
Sbjct: 177 AFCIIPHLRGDQRSRTIESIVAEARQLAAQGVQELVLISQ-ITTNYGLDLAG-KPQLAEL 234

Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
           L +L E++ +  +R   ++P  ++  ++ A+ D+  ++PYL LP+Q     +L++MNR  
Sbjct: 235 LRALGEVE-IPWIRVHYAYPTGLTPEVLAAYRDVPNVLPYLDLPLQHSHPDVLRAMNRPW 293

Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370
            A     ++ RIR   PD  + + FIVG+PGET++ F+  +D V +  +     F +SP 
Sbjct: 294 QADVTNGVLARIREQLPDAVLRTTFIVGYPGETEEQFQHLLDFVAEQRFDHVGVFTFSPE 353

Query: 371 LGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG 430
            GTP + +  QV   + AER   L    +      N A VG+I++VLIE+     G+++G
Sbjct: 354 EGTPAAELPNQVPAEIAAERKDRLMALQQPIAAERNAAWVGRIVDVLIEQENPSSGEMIG 413

Query: 431 R----SPWLQSV--VLNSKNHN---IGDIIKVRITDVKISTLYGELV 468
           R    +P +     V+  +       G ++ VRIT      L GE+V
Sbjct: 414 RCARFAPEVDGEVRVMPGEGGLCAAPGTMVPVRITAADTYDLIGEVV 460


>gi|228993053|ref|ZP_04152976.1| hypothetical protein bpmyx0001_37900 [Bacillus pseudomycoides DSM
           12442]
 gi|228999103|ref|ZP_04158685.1| hypothetical protein bmyco0003_36600 [Bacillus mycoides Rock3-17]
 gi|229006651|ref|ZP_04164285.1| hypothetical protein bmyco0002_35530 [Bacillus mycoides Rock1-4]
 gi|228754512|gb|EEM03923.1| hypothetical protein bmyco0002_35530 [Bacillus mycoides Rock1-4]
 gi|228760720|gb|EEM09684.1| hypothetical protein bmyco0003_36600 [Bacillus mycoides Rock3-17]
 gi|228766701|gb|EEM15341.1| hypothetical protein bpmyx0001_37900 [Bacillus pseudomycoides DSM
           12442]
          Length = 450

 Score =  406 bits (1043), Expect = e-111,   Method: Composition-based stats.
 Identities = 135/449 (30%), Positives = 235/449 (52%), Gaps = 21/449 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
                + GC++N Y++  +  +F   GYER      AD+ V+NTC +     +K    + 
Sbjct: 3   TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKADVYVINTCTVTNTGDKKSRQVIR 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R        +++  D ++ V GC AQ    EI+   P V++VVG Q   ++   +E  R 
Sbjct: 63  RA-------VRQNPDAVICVTGCYAQTSPAEIMA-IPGVDIVVGTQDREKMLGYIEEFRK 114

Query: 146 GKRVVDTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            ++ ++   ++     +E L +            A L IQEGC+ FCTFC++P+ RG+  
Sbjct: 115 ERQPINAVRNIMKTRVYEELDVP----YFTDRTRASLKIQEGCNNFCTFCIIPWARGLMR 170

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKGLVR 262
           SR   +V+ +A++L+D G  EI L G +     G G D +    + LL  + +E+ GL R
Sbjct: 171 SRDGKEVIHQAQQLVDAGYKEIVLTGIHTG---GYGEDMKNYNLAGLLRDMEAEVNGLKR 227

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LR ++     +SD +I+     +V++ +LH+P+QSGS+ +LK M R++T   +++ +DR+
Sbjct: 228 LRISSIEASQISDEVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRL 287

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           +   P +AI+SD IVGFPGET+++F  T + + +  +++   F YS R GTP + M +Q+
Sbjct: 288 KEALPGLAITSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMDDQI 347

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKH---GKEKGKLVGRSPWLQSVV 439
            E VK +R+  L +   +    +     G+++E++ E+    G  +G  VG +     VV
Sbjct: 348 PEEVKNDRVHRLIELSNQLAKEYASQFEGEVLEIIPEEPFKDGDREGLYVGYTDNYLKVV 407

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG ++KV+IT         + V
Sbjct: 408 FEGSEELIGKLVKVKITKAGYPYNEAQFV 436


>gi|256828394|ref|YP_003157122.1| MiaB family RNA modification protein [Desulfomicrobium baculatum
           DSM 4028]
 gi|256577570|gb|ACU88706.1| RNA modification enzyme, MiaB family [Desulfomicrobium baculatum
           DSM 4028]
          Length = 444

 Score =  406 bits (1043), Expect = e-111,   Method: Composition-based stats.
 Identities = 174/447 (38%), Positives = 246/447 (55%), Gaps = 14/447 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           RF + ++GCQMNV D+  +     S+G+       DA + V+ TC +REK  +KVYS LG
Sbjct: 2   RFHILTFGCQMNVADADWLTQSLVSRGWTEAG-ESDAQVFVVTTCSVREKPEQKVYSLLG 60

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R+++  +       D+ V V GCVAQ  GEE   R P V +V G      +P+ LER   
Sbjct: 61  RLKSYADRS----PDVFVAVGGCVAQQIGEEFWNRFPFVRLVFGTDGTAMVPQALERLAN 116

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
              +     S+ D  +     +          AF+ I +GCD FC +C+VP+TRG + SR
Sbjct: 117 DPALR---ISLLDFLDHYPEREQPEGGTVQAQAFVNIMQGCDNFCAYCIVPFTRGRQKSR 173

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           S   VV E   L+  G  E+TLLGQNVN+  G+   G+  +F+ LL  +S I GL+RL++
Sbjct: 174 SSDAVVAECEALVRRGARELTLLGQNVNS-YGQDKHGDGTSFASLLERISAIPGLMRLKF 232

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
           TTSHP+D++  ++ A G L  L P LHLPVQSGSD +LK+M R++T   Y   I  +R V
Sbjct: 233 TTSHPKDIAPEVVTAFGKLPNLCPQLHLPVQSGSDAVLKAMGRKYTRARYLDTIRELRRV 292

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P I +++D IVGFPGET  DF  T++L+ ++ Y  +FSFKYS R G     M  +V E 
Sbjct: 293 CPQITLTTDIIVGFPGETLQDFEDTLELMREVRYESSFSFKYSDRPGVRAEKMDFKVPEE 352

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG----KLVGRSPWLQSVVLN 441
            K+ RL  LQ+      V    A VG + EVL+E   K +        GR    + V  +
Sbjct: 353 EKSRRLAVLQEMQDRITVEELAAQVGSMAEVLVEGPSKMQDSEYIFWRGRDGGGRIVNFS 412

Query: 442 SK-NHNIGDIIKVRITDVKISTLYGEL 467
           S      G +++VRI D K  +L GE+
Sbjct: 413 SPIPCLTGRMVRVRIVDAKKHSLVGEI 439


>gi|148262793|ref|YP_001229499.1| MiaB-like tRNA modifying enzyme YliG [Geobacter uraniireducens Rf4]
 gi|238066246|sp|A5GBX9|RIMO_GEOUR RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|146396293|gb|ABQ24926.1| SSU ribosomal protein S12P methylthiotransferase [Geobacter
           uraniireducens Rf4]
          Length = 448

 Score =  406 bits (1043), Expect = e-111,   Method: Composition-based stats.
 Identities = 149/458 (32%), Positives = 234/458 (51%), Gaps = 23/458 (5%)

Query: 21  CIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKV 80
             + ++  + S GC  N+ D+  M      + YE      +AD+I++NTC   ++A ++ 
Sbjct: 3   TSIKEKVSLVSLGCPKNLVDAEVMLGYLAKEKYEVTTDEREADIIIVNTCSFIKEAKQES 62

Query: 81  YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140
              +  + + K     +    L++V GC+ Q   EE+++  P V++ VG   Y R+ E++
Sbjct: 63  IDTILDLADRK----HDARCRLLIVTGCLPQRYQEELVKELPEVDIFVGTGDYPRIAEII 118

Query: 141 ERARFGKRVV----DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
                    +    D ++  ++   RL             TA+L I EGC   C++CV+P
Sbjct: 119 AEKEGMSEQLRYTGDPNFLYDEDLPRLQSSPY-------YTAYLKIAEGCSNCCSYCVIP 171

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256
             RG   SR L +++ EAR+L+  GV EI L+ Q++    GK L G   +   L+  L+ 
Sbjct: 172 SLRGAFRSRPLDKLLKEARELVARGVKEINLIAQDITG-YGKDLAGG-ASLEGLIKELAA 229

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           + GL  +R   ++P  +SD LI+   D D +  YL +P+Q  SD +LK MNRR +  E R
Sbjct: 230 LDGLQWIRLLYAYPDGISDSLIQLIRDEDKVCKYLDIPLQHVSDPVLKRMNRRSSEAEIR 289

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
            +I ++R   P IA+ +  IVGFPGETD+DF+  +  V++  + +   F YS   GTP +
Sbjct: 290 SLIAKLRGEIPGIALRTSLIVGFPGETDEDFKKLLHFVEETRFDRLGVFCYSREEGTPSA 349

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GRS--- 432
            M +QV E VK ER   L +         N + V     VLIE + +E   L+ GRS   
Sbjct: 350 EMPDQVSERVKRERYKKLMRTQARVSFKHNRSLVDTEELVLIEGYSEETELLLKGRSSKQ 409

Query: 433 -PWLQS-VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            P +   V + S N  IGDI+K+RITD     L GE+V
Sbjct: 410 APDIDGQVYVTSGNAQIGDIVKLRITDSSDYDLIGEIV 447


>gi|295696216|ref|YP_003589454.1| MiaB-like tRNA modifying enzyme YliG [Bacillus tusciae DSM 2912]
 gi|295411818|gb|ADG06310.1| MiaB-like tRNA modifying enzyme YliG [Bacillus tusciae DSM 2912]
          Length = 442

 Score =  406 bits (1043), Expect = e-111,   Method: Composition-based stats.
 Identities = 143/452 (31%), Positives = 238/452 (52%), Gaps = 16/452 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + ++  V + GC+ N  DS  M  +    G++ V    +AD+IV+NTC   ++A  +  +
Sbjct: 1   MGRQIAVVTLGCEKNQVDSEVMMGLMERWGFDLVADPQEADVIVVNTCGFVDQAKAESVN 60

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            + ++   K +    G    +VVAGC+AQ   EE++R  P ++ ++G   ++R+PE++E+
Sbjct: 61  TILQMAQYKEN----GHCKALVVAGCLAQRYQEELMREIPEIDGMLGTGEFHRVPEVVEQ 116

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           A  G+  +     V    E       G       ++++ I EGCD  CTFC +P  RG  
Sbjct: 117 ALAGRHPMRFGNPVYLYDEVTPRKRVGL----PYSSYVKIAEGCDHGCTFCAIPLMRGKF 172

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR +  +V+EAR+L  +GV EI+L+ Q+     G  L G +    DLL +L+++  L  
Sbjct: 173 RSRPIPSIVEEARRLAADGVREISLIAQDST-QYGLDLYGRR-RLPDLLKALNDVDELRW 230

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R   ++P   +D LI A   L  +  Y+ LP+Q   D IL++M+R     + R++++RI
Sbjct: 231 IRLHYAYPGYFTDELIDAMAGLPKVCKYVDLPLQHSEDEILRAMHRPGRNSQVRKLLERI 290

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+  P++AI S FIVGFPGET++ F    D V+++ + +   F +S   GTP + M  Q+
Sbjct: 291 RTRIPNVAIRSSFIVGFPGETEEQFLRLADFVEEMAFDRIGVFAFSREEGTPSAAMEGQI 350

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRS----PWLQS 437
            E  K  R   L +  R+   +   A VGQ+I+ L+E+   +     +GRS    P +  
Sbjct: 351 SEAEKERRAAWLMEVGRKASAARGAARVGQVIDCLLERQDDRRPDIWIGRSEYDAPEIDG 410

Query: 438 -VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            V ++      G+ +KVRIT      L GE V
Sbjct: 411 QVFVSGAGGRPGEFVKVRITHSFDFDLAGEGV 442


>gi|239637612|ref|ZP_04678584.1| conserved hypothetical protein [Staphylococcus warneri L37603]
 gi|239596830|gb|EEQ79355.1| conserved hypothetical protein [Staphylococcus warneri L37603]
          Length = 448

 Score =  406 bits (1043), Expect = e-111,   Method: Composition-based stats.
 Identities = 140/445 (31%), Positives = 235/445 (52%), Gaps = 17/445 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
                + GC++N Y++  +  +F    YERV+   +AD+ V+NTC +     +K    + 
Sbjct: 3   TVAFHTLGCKVNHYETEAIWQLFKEADYERVDFETNADVFVINTCTVTNTGDKKSRQIIR 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R        I++  D +V V GC AQ    EI+   P V+VVVG Q  ++L + ++  + 
Sbjct: 63  RA-------IRKNPDAVVCVTGCYAQTSSAEIM-EIPGVDVVVGTQDRHKLLDYIDEFQK 114

Query: 146 GKRVVDT--DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            ++ ++   +     K+E L +            A L IQEGC+ FCTFC++P+ RG+  
Sbjct: 115 ERQPINGVGNIMKNRKYEELDVP----YFTDRTRASLKIQEGCNNFCTFCIIPWARGLMR 170

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR   +VV++A  L++ G  EI L G +     G G D +    + LL  L ++ GL R+
Sbjct: 171 SRDPEKVVEQATTLVNAGYKEIVLTGIHTG---GYGQDLKNYNLAQLLRDLDQVDGLERI 227

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R ++     ++D +I      + ++ +LH+P+QSGSD +LK M R++T   + + I ++ 
Sbjct: 228 RISSIEASQLTDEVIDVLERSNKIVRHLHVPLQSGSDTVLKRMRRKYTMEHFSERITKLH 287

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              PD+AI+SD IVGFPGET+++F+ T D + K  +++   F YS R+GTP + M  Q+D
Sbjct: 288 EALPDVAITSDVIVGFPGETEEEFQETYDFIVKHQFSELHVFPYSSRIGTPAARMDNQID 347

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
           E++K ER+  L     +    +      +++EV+ E+ G++   LVG +     V     
Sbjct: 348 EDIKNERVHKLIALSDQLAKEYASKFENEVLEVIPEEKGEKPNTLVGYADNYMKVEFEGT 407

Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468
              IG IIKV+I        YG+ +
Sbjct: 408 EDLIGQIIKVKIQKADYPLNYGKAI 432


>gi|328955566|ref|YP_004372899.1| RNA modification enzyme, MiaB family [Coriobacterium glomerans PW2]
 gi|328455890|gb|AEB07084.1| RNA modification enzyme, MiaB family [Coriobacterium glomerans PW2]
          Length = 456

 Score =  406 bits (1043), Expect = e-111,   Method: Composition-based stats.
 Identities = 166/450 (36%), Positives = 263/450 (58%), Gaps = 16/450 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + +FV+++GCQMN++DS R+  +  S G   V +  +AD++V  TC +RE A  ++Y   
Sbjct: 13  KTYFVRTFGCQMNLHDSERVAGLLDSCGCLEVETPQEADIVVFMTCCVREAADVRLY--- 69

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           G+  +LK+     GG  +V V GC+AQ +G ++L     V+VV G  +   + +LL  A 
Sbjct: 70  GQCSSLKSLSSPPGGRRIVAVGGCIAQRDGRDLLCNLDNVDVVFGTHSIAHVAQLLAAAF 129

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
             +    + +      E+ +  D  ++R+R   A++ I  GC+ FC++C+VPY RG E S
Sbjct: 130 EDE----SPHVRTRDQEKRAATDMPWSRRRTYHAWVPIMTGCNNFCSYCIVPYVRGRERS 185

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R   +V+DE   L  +GV E+TLLGQNVN+  G+   G +  F+ LL  +++  G+ R+R
Sbjct: 186 RPADEVIDEVVGLARSGVREVTLLGQNVNS-YGRDSAG-RPRFAKLLREVAD-TGIERIR 242

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +T+SHP+D+    I+A  DL  +MP LHL VQSGS RIL  MNRR++   Y ++IDR+R 
Sbjct: 243 FTSSHPKDLLPETIEAMADLPAVMPQLHLAVQSGSSRILSLMNRRYSRESYLELIDRVRQ 302

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             P+IA+S+D IVGFPGE++DDF  T+ LV  + ++QAF+F YS R GTP + + +    
Sbjct: 303 RMPEIALSTDIIVGFPGESEDDFEETLSLVRSVRFSQAFTFIYSRRQGTPAAQIEDSTPR 362

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNSK 443
           +V  +R   L + + +  +  N+  +G+ + VLIE   K+    L G+SP  Q+V     
Sbjct: 363 DVVLDRYNRLLRVVEQGALENNERDLGRTVPVLIEGSSKKNPDMLQGKSPKNQTVHAPVP 422

Query: 444 N-----HNIGDIIKVRITDVKISTLYGELV 468
           +       +G I+ V I   +   L G +V
Sbjct: 423 DTADARRFVGSILDVTIKRARTWYLTGSVV 452


>gi|254821762|ref|ZP_05226763.1| hypothetical protein MintA_17652 [Mycobacterium intracellulare ATCC
           13950]
          Length = 394

 Score =  406 bits (1043), Expect = e-111,   Method: Composition-based stats.
 Identities = 156/403 (38%), Positives = 241/403 (59%), Gaps = 15/403 (3%)

Query: 18  VDQCIVP-QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA 76
           + +   P + + V++YGCQMNV+DS R+  +  + GY+R     DAD++V NTC +RE A
Sbjct: 1   MARGAAPARTYQVRTYGCQMNVHDSERLAGLLEAAGYQRAAEDADADVVVFNTCAVRENA 60

Query: 77  AEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL 136
             K+Y  L  +   K    ++  ++ + V GC+AQ + + +LR++P V+VV G      L
Sbjct: 61  DNKLYGNLSHLAPRK----RDDPEMQIAVGGCLAQKDRDALLRKAPWVDVVFGTHNIGSL 116

Query: 137 PELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
           P LLERAR  K   V+   ++++    L        R+    A+++I  GC+  CTFC+V
Sbjct: 117 PTLLERARHNKVAQVEIAEALQEFPSSLPSA-----RESAYAAWVSISVGCNNSCTFCIV 171

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG----EKCTFSDLL 251
           P  RG E+ RS   ++ E   L+D+GV E+TLLGQNVNA+     D     ++  F+ LL
Sbjct: 172 PSLRGKEVDRSPDDILAEVASLVDDGVLEVTLLGQNVNAYGVSFADPALPRDRGAFARLL 231

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
            +  +I GL R+R+T+ HP + +D +I+A      + P LH+P+QSGSDR+L++M R + 
Sbjct: 232 RACGDIDGLERVRFTSPHPAEFTDDVIEAMAQTPNVCPALHMPLQSGSDRVLRAMRRSYR 291

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
           A  Y  IIDR+R+  P  AI++D IVGFPGET++DF AT+D+V +  ++ AF+F+YS R 
Sbjct: 292 AERYLGIIDRVRAAMPHAAITTDLIVGFPGETEEDFAATLDVVRRARFSAAFTFQYSKRP 351

Query: 372 GTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQII 414
           GTP +++  Q+ + V  ER   L     E  +  N A VGQ +
Sbjct: 352 GTPAADLDGQLPKAVVQERYERLVALQEEISLQGNQALVGQTV 394


>gi|225431257|ref|XP_002274814.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 626

 Score =  406 bits (1043), Expect = e-111,   Method: Composition-based stats.
 Identities = 165/506 (32%), Positives = 253/506 (50%), Gaps = 52/506 (10%)

Query: 13  MVSQIVDQCIVPQ-RFFVKSYGCQMNVYDSLRMEDMFFSQGY-ERVNSMDDADLIVLNTC 70
               +    I+P+ R + ++YGCQMN+ D   +  +    GY E V   + A++I +NTC
Sbjct: 98  QPDPVSASEILPRGRIYHETYGCQMNINDMEIVLSIMKKAGYNEVVEVPESAEVIFINTC 157

Query: 71  HIREKAAEKVYSFLGRIRNLKNSRIKEG--------GDLLVVVAGCVAQAEGEEILRRSP 122
            IR+ A +KV+  L     LK                   VVV GC+A+   ++IL    
Sbjct: 158 AIRDNAEQKVWQRLNYFWFLKRHWKSNVSIGRADSLHPPKVVVLGCMAERLKDKILDADK 217

Query: 123 IVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTI 182
           +V+VV GP  Y  LP LLE   +G++ ++T  S+E+ +  +S V      K  VTAF++I
Sbjct: 218 MVDVVCGPDAYRDLPRLLEEVDYGQKGINTLLSLEETYADISPVRIS---KNSVTAFVSI 274

Query: 183 QEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG-KGLD 241
             GC+  C+FC+VP+TRG E SR +  +V E  +L   GV E+ LLGQNVN++    G D
Sbjct: 275 MRGCNNMCSFCIVPFTRGRERSRPVESIVREVAELWKEGVKEVMLLGQNVNSYNDASGFD 334

Query: 242 GE----------------------KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIK 279
            E                         FSDLL  LS     +R RYT+ HP+D  D L+ 
Sbjct: 335 KEVEPGANWKLSEGFSSKCKVKKMGLRFSDLLDRLSTEFPEMRFRYTSPHPKDFPDELLY 394

Query: 280 AHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGF 339
              D   +   +HLP Q+GS  +L+ M R +T   Y  ++ +IR + PD+ I+SDFI GF
Sbjct: 395 LMRDRYNVCKSIHLPAQTGSSTVLERMRRGYTREAYLDLVQKIRRIVPDVGITSDFICGF 454

Query: 340 PGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN-MLEQVDENVKAERLLCLQKKL 398
            GET++++  T+ LV  +GY  A+ F YS R  T      ++ V +N+K  RL  + +  
Sbjct: 455 CGETEEEYADTISLVKAVGYDMAYMFAYSMREKTHAHRNYVDDVPDNIKQRRLAEMIEVF 514

Query: 399 REQQVSFNDACVGQIIEVLIEKHGKE--KGKLVGRSPWLQSVVLNSK------------- 443
           RE      D+ +G +  VL+E   K     +L+G++     V   +              
Sbjct: 515 RESTGQCYDSQIGTVQLVLVEGPNKRAPDTELIGKTDRGHRVSFKNTPVPHWDDDVGGNQ 574

Query: 444 NHNIGDIIKVRITDVKISTLYGELVV 469
           N  +GD ++VRI     ++L+GE + 
Sbjct: 575 NPRVGDFVEVRILTSTRASLFGEALA 600


>gi|311064642|ref|YP_003971367.1| tRNA 2-methylthioadenosine synthase [Bifidobacterium bifidum
           PRL2010]
 gi|310866961|gb|ADP36330.1| tRNA 2-methylthioadenosine synthase [Bifidobacterium bifidum
           PRL2010]
          Length = 479

 Score =  406 bits (1043), Expect = e-111,   Method: Composition-based stats.
 Identities = 164/453 (36%), Positives = 249/453 (54%), Gaps = 23/453 (5%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDAD----LIVLNTCHIREKAAEKVYS 82
           F+V + GCQMNV+DS R+  +    GY        AD    LIV+NTC +RE AAE++Y 
Sbjct: 26  FYVHTLGCQMNVHDSERIAGVLEDDGYMPATEEQAADKDVDLIVMNTCAVRENAAERMYG 85

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +G   +LK    +   ++ + + GC+AQ + + I +++P V+ V G +    LP LL++
Sbjct: 86  TIGLWADLK----RTHPNMQIAIGGCMAQLDRKRIAQKAPWVDAVFGTKNIGSLPRLLDQ 141

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           AR             D F     V     R   V+++++I  GC+  CTFC+VP TRG E
Sbjct: 142 ARMAGTCQVEVADRLDYFPSQLPV----ARASKVSSWVSISIGCNNTCTFCIVPTTRGKE 197

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
             R    ++ E R+ +D G  E+TLLGQNVN++ G G+ G++  FS LL +  +I+GL R
Sbjct: 198 HDRRPGDILAEIRRCVDEGAKEVTLLGQNVNSF-GYGI-GDRYAFSKLLRACGDIEGLER 255

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+T+ HP   +D +I A  +   +M  LH+P+QSGSD+IL++M R + + ++  I+ ++
Sbjct: 256 VRFTSPHPAAFTDDVIAAMAETPNVMHQLHMPLQSGSDKILRAMRRSYRSAKFLDILRKV 315

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R   PD  IS+D IVGFPGETD+DF ATMD+V +  +  AF+F+YSPR GTP + M EQV
Sbjct: 316 REAMPDAQISTDIIVGFPGETDEDFEATMDVVRQARFQSAFTFEYSPRPGTPAAEM-EQV 374

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKG---KLVGRSPWLQSV 438
              V  ER   L K   +          G+ +EV+I    GK+     ++ GR      V
Sbjct: 375 PHEVVQERFDRLVKLQEQITEEELAKFEGRDVEVMITGAQGKKDSATHRVTGRERTGVLV 434

Query: 439 VLNSKN----HNIGDIIKVRITDVKISTLYGEL 467
            +   +      IGD +   +T      L  + 
Sbjct: 435 HIGVPDGEPMPQIGDFVTATVTHAGRHNLIADP 467


>gi|327453856|gb|EGF00511.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes
           HL083PA2]
          Length = 494

 Score =  405 bits (1042), Expect = e-111,   Method: Composition-based stats.
 Identities = 162/466 (34%), Positives = 258/466 (55%), Gaps = 24/466 (5%)

Query: 13  MVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYE---RVNSMDDADLIVLNT 69
           M +  +     P  + V +YGCQMNV+DS R+  +    GY    R +++  AD++V NT
Sbjct: 1   MPNNTLQHTEAP-TYRVVTYGCQMNVHDSERIAGLLEEAGYVPDPRTDTLAPADVVVFNT 59

Query: 70  CHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG 129
           C +RE A  ++Y  LG +  +K++       + + V GC+AQ + + ++ R+P V+VV G
Sbjct: 60  CAVRENADNRLYGTLGHMAAVKSAH----PGMQLAVGGCMAQKDKDTVVARAPWVDVVFG 115

Query: 130 PQTYYRLPELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
                 LP LL+RAR      V+ + S+      L        R    +A+++I  GC+ 
Sbjct: 116 THNVGSLPVLLKRARHNATAQVEIEESLVTFPSNLP-----ARRDSAYSAWVSISVGCNN 170

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS 248
            CTFC+VP  RG E  R   +++ E R L++ GV EITLLGQNVN++  +   G++  F+
Sbjct: 171 TCTFCIVPQLRGKETDRRPGEILSEIRALVNEGVQEITLLGQNVNSYGVQF--GDRGAFA 228

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
            LL +   I GL R+R+T+ HP   +D +I+A  +   +MP LH+P+QSGSD +L+ M R
Sbjct: 229 KLLRACGNIDGLERVRFTSPHPAAFTDDVIEAMAETPNVMPSLHMPLQSGSDEVLRRMRR 288

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
            + + ++  I+DR+R   P  AI++D IVGFPGETD DF  TM +V++  ++ AF+F+YS
Sbjct: 289 SYRSTKFLGILDRVREAIPHAAITTDIIVGFPGETDKDFAETMRIVEESRFSAAFTFQYS 348

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKG- 426
            R  TP   M +QV + V  ER   L + + +     N A VG+ +EV+  +  G++   
Sbjct: 349 IRPNTPAGVMKDQVPKPVVQERYEQLVELVDDIAWQENKAQVGRAVEVMFAQGEGRKDEA 408

Query: 427 --KLVGRSPWLQSVVL---NSKN-HNIGDIIKVRITDVKISTLYGE 466
             ++ GR+   + V +      +    GDI +V IT      L  +
Sbjct: 409 THRVTGRARDNRLVHVSLNPGDDVPRPGDIGEVVITSGHPHHLVAD 454


>gi|237785694|ref|YP_002906399.1| 2-methylthioadenine synthetase [Corynebacterium kroppenstedtii DSM
           44385]
 gi|237758606|gb|ACR17856.1| 2-methylthioadenine synthetase [Corynebacterium kroppenstedtii DSM
           44385]
          Length = 509

 Score =  405 bits (1042), Expect = e-111,   Method: Composition-based stats.
 Identities = 153/476 (32%), Positives = 249/476 (52%), Gaps = 56/476 (11%)

Query: 36  MNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRI 95
           MNV+DS R+  +    GY  V S D AD++V NTC +RE A  ++Y  LG+++++K++  
Sbjct: 1   MNVHDSERLAGLLEEAGYVPVGSDDPADVVVFNTCAVRENADNRLYGTLGQLKSVKDA-- 58

Query: 96  KEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYS 155
               D+ + V GC+AQ + + +++R+P V+VV G     +LP LL RA            
Sbjct: 59  --KPDMQIAVGGCMAQKDKDVVVKRAPWVDVVFGTHNIGKLPTLLARAAHNHEAQVEIAD 116

Query: 156 VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEAR 215
             ++F  +        R    + ++++  GC+  CTFC+VP  RG E  R    ++ E +
Sbjct: 117 ALEQFPSVLPA----KRDSAYSGWVSVSVGCNNTCTFCIVPSLRGKEKDRRPGDILAEVQ 172

Query: 216 KLIDNGVCEITLLGQNVNAWRGKGLDG----EKCTFSDLLYSLSEIKGLVRLRYTTSHPR 271
            L+D+GV E+TLLGQNVNA+     D     ++  FS LL +  +I+GL R+R+T+ HP 
Sbjct: 173 TLVDDGVSEVTLLGQNVNAYGVHFEDPTLERDRSAFSKLLRACGDIEGLERVRFTSPHPA 232

Query: 272 DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAI 331
           + +  +I A  +   + P LH+P+QSGSD++LK M R +    + +I+D +R   P  +I
Sbjct: 233 EFTSDVIDAMAETHNVCPQLHMPLQSGSDKVLKEMRRSYRTKRFMRILDEVREKLPQASI 292

Query: 332 SSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERL 391
           ++D IVGFPGET++DF+ T+DLV+K  +  A++F+YSPR GTP + M +QV + V  +R 
Sbjct: 293 TTDIIVGFPGETEEDFQQTLDLVEKARFTSAYTFQYSPRPGTPAAAMEDQVPKAVVQDRY 352

Query: 392 LCLQKKLREQQVSFNDACVGQIIEVLIE----KHGKEKGKLVGRSPWLQSVVLNSKNHNI 447
             L +         N   VG ++EVL++    +   +  +L GR+   + V       ++
Sbjct: 353 ERLVELQERISAELNAEMVGDVVEVLVQADDGRRSAQTHRLSGRTRDGRLVHFAPDAASM 412

Query: 448 ----------------------------------------GDIIKVRITDVKISTL 463
                                                   GD++ VRITD +   L
Sbjct: 413 EETARAWDSIGATPMAHPTSPGRNSVEECVKPGVDQAIRAGDVVWVRITDSRSHFL 468


>gi|70726341|ref|YP_253255.1| hypothetical protein SH1340 [Staphylococcus haemolyticus JCSC1435]
 gi|68447065|dbj|BAE04649.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 448

 Score =  405 bits (1042), Expect = e-111,   Method: Composition-based stats.
 Identities = 141/445 (31%), Positives = 238/445 (53%), Gaps = 17/445 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
                + GC++N Y++  +  +F    Y+RVN   +AD+ V+NTC +     +K    + 
Sbjct: 3   TVAFHTLGCKVNHYETEAIWQLFKDANYDRVNFETNADVFVINTCTVTNTGDKKSRQIIR 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R        I++  D +V V GC AQ    EI+   P V+VVVG Q  ++L + +++ R 
Sbjct: 63  RA-------IRQNPDAVVCVTGCYAQTSSAEIM-EIPGVDVVVGTQDRHKLLDYIQQFRE 114

Query: 146 GKRVVDT--DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            ++ ++   +      +E L +            A L IQEGC+ FCTFC++P+ RG+  
Sbjct: 115 ERQPINGVGNIMKNRTYEELDVP----YFTDRTRASLKIQEGCNNFCTFCIIPWARGLMR 170

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR   +VV++A +L++ G  EI L G +     G G D +    + LL  L EI GL R+
Sbjct: 171 SRDPEKVVEQATQLVNAGYKEIVLTGIHTG---GYGQDLKDYNLAQLLRDLEEIDGLERI 227

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R ++     ++D +I      + ++ +LH+P+QSGSD +LK M R++T   + + I ++ 
Sbjct: 228 RISSIEASQLTDEVIDVLKRSNKVVRHLHVPLQSGSDTVLKRMRRKYTMEHFSERIMKLH 287

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              PD+A++SD IVGFPGET+++F+ T D + K  +++   F YS R+GTP + M +Q+D
Sbjct: 288 DALPDLAVTSDVIVGFPGETEEEFQETYDFIVKHKFSELHVFPYSARIGTPAARMDDQID 347

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
           E +K ER+  L     +    +      +++EV+ E+ G+ +G LVG +     V     
Sbjct: 348 ETIKNERVHKLITLSDQLAKEYASKFEDEVLEVIPEEAGEIEGTLVGYADNYMKVQFEGN 407

Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468
           +  IG I+KV+I         G++V
Sbjct: 408 DSLIGQIVKVKIAKADYPINKGKVV 432


>gi|206969427|ref|ZP_03230381.1| RNA modification enzyme, MiaB family [Bacillus cereus AH1134]
 gi|229180587|ref|ZP_04307929.1| hypothetical protein bcere0005_39320 [Bacillus cereus 172560W]
 gi|229192521|ref|ZP_04319483.1| hypothetical protein bcere0002_41730 [Bacillus cereus ATCC 10876]
 gi|206735115|gb|EDZ52283.1| RNA modification enzyme, MiaB family [Bacillus cereus AH1134]
 gi|228590945|gb|EEK48802.1| hypothetical protein bcere0002_41730 [Bacillus cereus ATCC 10876]
 gi|228603011|gb|EEK60490.1| hypothetical protein bcere0005_39320 [Bacillus cereus 172560W]
          Length = 450

 Score =  405 bits (1042), Expect = e-111,   Method: Composition-based stats.
 Identities = 136/449 (30%), Positives = 237/449 (52%), Gaps = 21/449 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
                + GC++N Y++  +  +F   GYER      AD+ V+NTC +     +K    + 
Sbjct: 3   TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKADVYVINTCTVTNTGDKKSRQVIR 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R        +++  D ++ V GC AQ    EI+   P V++VVG Q   ++   +E  R 
Sbjct: 63  RA-------VRQNPDAVICVTGCYAQTSPAEIMA-IPGVDIVVGTQDREKMLGYIEEFRK 114

Query: 146 GKRVVDTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            ++ ++   ++     +E L +            A L IQEGC+ FCTFC++P+ RG+  
Sbjct: 115 ERQPINAVRNIMKTRVYEELDVP----YFTDRTRASLKIQEGCNNFCTFCIIPWARGLMR 170

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKGLVR 262
           SR   +V+ +A++L+D G  EI L G +     G G D +    + LL  + +E+ GL R
Sbjct: 171 SRDGKEVIKQAQQLVDAGYKEIVLTGIHTG---GYGEDIKDYNLAGLLRDMEAEVDGLKR 227

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LR ++     +SD +I+     +V++ +LH+P+QSGS+ +LK M R++T   +++ +DR+
Sbjct: 228 LRISSIEASQISDEVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRL 287

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           +   P +AI+SD IVGFPGET+++F  T + + +  +++   F YS R GTP + M +QV
Sbjct: 288 KEALPGLAITSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQV 347

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK---HGKEKGKLVGRSPWLQSVV 439
            E+VK +R+  L +   +    +  A  G+++E++ E+    G  +G  VG +     +V
Sbjct: 348 PEDVKNDRVHRLIELSNQLAKEYASAFEGEVLEIIPEEQFKEGDREGLYVGYTDNYLKIV 407

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG ++KV+IT         + V
Sbjct: 408 FEGSEELIGKLVKVKITKAGYPYNEAQFV 436


>gi|121535290|ref|ZP_01667104.1| MiaB-like tRNA modifying enzyme YliG [Thermosinus carboxydivorans
           Nor1]
 gi|121306175|gb|EAX47103.1| MiaB-like tRNA modifying enzyme YliG [Thermosinus carboxydivorans
           Nor1]
          Length = 441

 Score =  405 bits (1042), Expect = e-111,   Method: Composition-based stats.
 Identities = 130/447 (29%), Positives = 218/447 (48%), Gaps = 16/447 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC  N+ D+  M  +  +     V+   DAD++++NTC   + A E+  + + 
Sbjct: 3   KAGFVSLGCAKNLVDTEVMLGILTNNNIAIVDDPGDADILIVNTCGFIDSAKEESITTIL 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           ++   K    KE     ++VAGC+ Q   +E+L   P V+ +VG   ++R+ E ++ A  
Sbjct: 63  QMAEYK----KESNCRALIVAGCLGQRYQQELLDELPEVDAIVGTGAWHRIMEAVQAALS 118

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G+RV+    +     E +  +          +A++ + EGC   C++CV+P  RG   SR
Sbjct: 119 GQRVLVIGPTETIYDETMPRI----YTTPKYSAYVKVAEGCSNCCSYCVIPLVRGRFRSR 174

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
               +V E ++L  NG+ EI L+ Q+  +  G+ L G+      LL +L +I+G+  +R 
Sbjct: 175 PQESIVSEVKRLAANGIKEINLIAQDTTS-YGRDLYGQLQ-LPQLLRALVQIEGIEWIRL 232

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
              +PR  +D LI+       +  Y+ LP+Q   D ILK+M+RR + ++   ++ +IR  
Sbjct: 233 LYCYPRYFTDELIEVIAKEPKICKYVDLPLQHIHDDILKAMHRRDSRFDIESLLAKIRKA 292

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            PD+AI + FIVGFPGETDD F+   + +    +     F YS   GT    M +QV E 
Sbjct: 293 IPDVAIRTSFIVGFPGETDDHFQVLQEFMQVQKFDHVGIFTYSQEEGTVAGAMADQVPEE 352

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQS-VVL 440
           VK ER   L     +     N    G++++VL+E    + G + GRS    P +   V +
Sbjct: 353 VKQERYHALMALQCQISEEINRQLEGRVLKVLVEGKSDQPGVVFGRSYREAPDVDGRVYV 412

Query: 441 NS-KNHNIGDIIKVRITDVKISTLYGE 466
                   GD+I  ++       L  E
Sbjct: 413 EGAPGSRAGDLIVAKVVQGFTYDLLAE 439


>gi|255560986|ref|XP_002521505.1| radical sam protein, putative [Ricinus communis]
 gi|223539183|gb|EEF40776.1| radical sam protein, putative [Ricinus communis]
          Length = 535

 Score =  405 bits (1042), Expect = e-111,   Method: Composition-based stats.
 Identities = 169/518 (32%), Positives = 258/518 (49%), Gaps = 52/518 (10%)

Query: 1   MGLFIKLIGVAHMVSQIVDQCIVPQ-RFFVKSYGCQMNVYDSLRMEDMFFSQGY-ERVNS 58
           M  F+ L   A  +   +D  I  + R + ++YGCQMN+ D   +  +    GY E V+ 
Sbjct: 1   MFSFVLLSRTAQALEVPLDTEIPVRGRIYHETYGCQMNINDMEIVLSIMKDAGYREVVDV 60

Query: 59  MDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRI--------KEGGDLLVVVAGCVA 110
            + A++I +NTC IR+ A +KV+  L     LK            +      VVV GC+A
Sbjct: 61  PESAEIIFINTCAIRDNAEQKVWQRLNYFWFLKRHWKSNVTIGRSQSLSPPKVVVLGCMA 120

Query: 111 QAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGY 170
           +   ++IL    +V+VV GP  Y  LP LLE   +G++ ++T  S+E+ +  +  V    
Sbjct: 121 ERLKDKILDADKMVDVVCGPDAYRDLPRLLEEVDYGQKGINTLLSLEETYADICPVRIS- 179

Query: 171 NRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQ 230
             K  +TAF+++  GC+  C+FC+VP+TRG E SR +  +V E  +L   GV E+TLLGQ
Sbjct: 180 --KNSITAFVSVMRGCNNMCSFCIVPFTRGRERSRPVDSIVKEVAELWKEGVKEVTLLGQ 237

Query: 231 NVNAWRG-----------------------KGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
           NVN++                           +      FSDLL  LS     +R RYT+
Sbjct: 238 NVNSYNDASGVENEVEPGSNWKLSEGFSSMCKVKKMGLRFSDLLDRLSTEFPEMRFRYTS 297

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
            HP+D  D L+    D   +   +HLP QSGS  +L+ M R +T   Y  ++ +IR + P
Sbjct: 298 PHPKDFPDDLLYVMRDKYNICKSIHLPAQSGSSTVLERMRRGYTREAYLDLVQKIRRIMP 357

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN-MLEQVDENV 386
           D+ I+SDFI GF GET++D  +T+ LV  +GY  A+ F YS R  T       + V +NV
Sbjct: 358 DVGITSDFICGFCGETEEDHESTLSLVRTVGYDMAYMFAYSMREKTHAHRNYNDDVPDNV 417

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE--KGKLVGRSPWLQSV------ 438
           K  RL  L +  R       D+ +G I  VL+E   K     +L+G++     V      
Sbjct: 418 KQRRLTELIEAFRGSTGQCYDSQIGSIQLVLVEGPNKRAPDTELIGKTDRGHRVSFINLA 477

Query: 439 -------VLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
                   +N +N  +GD ++VRI     ++L+GE + 
Sbjct: 478 VPNRSEGFINKRNPVVGDYVEVRILKSTRASLFGEALA 515


>gi|30690642|ref|NP_195357.2| radical SAM domain-containing protein / TRAM domain-containing
           protein [Arabidopsis thaliana]
 gi|32129440|sp|Q8H0V1|CK5P1_ARATH RecName: Full=CDK5RAP1-like protein
 gi|25083016|gb|AAN72033.1| putative protein [Arabidopsis thaliana]
 gi|30725464|gb|AAP37754.1| At4g36390 [Arabidopsis thaliana]
 gi|332661250|gb|AEE86650.1| Methylthiotransferase [Arabidopsis thaliana]
          Length = 640

 Score =  405 bits (1042), Expect = e-111,   Method: Composition-based stats.
 Identities = 167/504 (33%), Positives = 257/504 (50%), Gaps = 52/504 (10%)

Query: 15  SQIVDQCIVPQ-RFFVKSYGCQMNVYDSLRMEDMFFSQGY-ERVNSMDDADLIVLNTCHI 72
              +D  I  + R + ++YGCQMN+ D   +  +  + GY E V   + A++I +NTC I
Sbjct: 118 ESTLDSDIASKGRIYHETYGCQMNINDMEIVLAIMKNSGYKEVVTDPESAEVIFVNTCAI 177

Query: 73  REKAAEKVYSFLGRIRNLKNSRI--------KEGGDLLVVVAGCVAQAEGEEILRRSPIV 124
           RE A ++V+  L     LK            K      VVV GC+A+   ++IL    +V
Sbjct: 178 RENAEQRVWQRLNYFWFLKREWKVNAATGRAKSLKPPKVVVLGCMAERLKDKILDSDKMV 237

Query: 125 NVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQE 184
           +VV GP  Y  LP LLE   +G++ ++T  S+E+ +  +S V      +  +TAF+++  
Sbjct: 238 DVVCGPDAYRDLPRLLEEVDYGQKGINTLLSLEETYADISPVRIS---ENSITAFVSVMR 294

Query: 185 GCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE- 243
           GC+  C FC+VP+TRG E SR +  ++ E  +L ++GV E+TLLGQNVN++     D E 
Sbjct: 295 GCNNMCAFCIVPFTRGRERSRPVESIIREVGELWESGVKEVTLLGQNVNSYNDDSADRES 354

Query: 244 -------------------KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL 284
                                 F+DLL  LS     +R R+T+ HP+D  D L+    D 
Sbjct: 355 GANWEYSEGFSSRCKVKNMGLRFADLLDRLSVEFPEMRFRFTSPHPKDYPDELLYLMRDR 414

Query: 285 DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETD 344
             +   +HLP QSG+ RIL+ M R +T   Y  ++ +IRS+ PD+AI+SDFI GF GET+
Sbjct: 415 HNICNLIHLPAQSGNSRILEQMRRGYTREAYLDLVKKIRSIIPDVAITSDFITGFCGETE 474

Query: 345 DDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN-MLEQVDENVKAERLLCLQKKLREQQV 403
           ++ + T+ LV  +GY  A+ F YS R  T       + V E VK  RL  L    RE   
Sbjct: 475 EEHQETLSLVRAVGYDMAYMFAYSMREKTHAHRNYTDDVPEEVKQRRLTELIDAFRETTG 534

Query: 404 SFNDACVGQIIEVLIEKHGKE--KGKLVGRSPWLQSV------------VLNSKNHN--- 446
              D+ VG    VL+E   K   + +L+G++     V            +L+  +     
Sbjct: 535 PCYDSQVGSTQLVLVEGPNKRAPETELIGKTDKGHRVSFVTKPLFDKACLLDGDDLKRNP 594

Query: 447 -IGDIIKVRITDVKISTLYGELVV 469
            IGD ++V+I     ++L+GE + 
Sbjct: 595 GIGDFVEVQIEKSTRASLFGEALA 618


>gi|315101123|gb|EFT73099.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes
           HL046PA1]
          Length = 494

 Score =  405 bits (1042), Expect = e-111,   Method: Composition-based stats.
 Identities = 162/466 (34%), Positives = 259/466 (55%), Gaps = 24/466 (5%)

Query: 13  MVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYE---RVNSMDDADLIVLNT 69
           M +  +     P  + V +YGCQMNV+DS R+  +    GY    R +++  AD++V NT
Sbjct: 1   MPNNTLQHTEAP-TYRVVTYGCQMNVHDSERIAGLLEEAGYVPDPRTDTLAPADVVVFNT 59

Query: 70  CHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG 129
           C +RE A  ++Y  LG +  +K++       + + V GC+AQ + + ++ R+P V+VV G
Sbjct: 60  CAVRENADNRLYGTLGHMAAVKSAH----PGMQLAVGGCMAQKDKDTVVARAPWVDVVFG 115

Query: 130 PQTYYRLPELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
                 LP LL+RAR      V+ + S+      L        R    +A+++I  GC+ 
Sbjct: 116 THNVGSLPVLLKRARHNATAQVEIEESLVTFPSNLP-----ARRDSAYSAWVSISVGCNN 170

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS 248
            CTFC+VP  RG E  R   +++ E R L++ GV EITLLGQNVN++  +   G++  F+
Sbjct: 171 TCTFCIVPQLRGKETDRRPGEILSEIRALVNEGVQEITLLGQNVNSYGVQF--GDRGAFA 228

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
            LL +   I GL R+R+T+ HP   +D +I+A  +   +MP LH+P+QSGSD +L+ M R
Sbjct: 229 KLLRACGNIDGLERVRFTSPHPAAFTDDVIEAMAETPNVMPSLHMPLQSGSDEVLRRMRR 288

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
            + + ++  I+DR+R   P +AI++D IVGFPGETD DF  TM +V++  ++ AF+F+YS
Sbjct: 289 SYRSTKFLGILDRVREAIPHVAITTDIIVGFPGETDKDFAETMRIVEESRFSAAFTFQYS 348

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKG- 426
            R  TP   M +QV + V  ER   L + + +     N A VG+ +EV+  +  G++   
Sbjct: 349 IRPNTPAGVMKDQVPKPVVQERYEQLVELVDDIAWQENKAQVGRAVEVMFAQGEGRKDEA 408

Query: 427 --KLVGRSPWLQSVVL---NSKN-HNIGDIIKVRITDVKISTLYGE 466
             ++ GR+   + V +      +    GDI +V IT      L  +
Sbjct: 409 THRVTGRARDNRLVHVSLNPGDDVPRPGDIGEVVITSGHPHHLVAD 454


>gi|83281193|dbj|BAD15110.2| similar to CDK5 regulatory subunit-associated protein [Nicotiana
           tabacum]
          Length = 623

 Score =  405 bits (1041), Expect = e-111,   Method: Composition-based stats.
 Identities = 160/505 (31%), Positives = 250/505 (49%), Gaps = 51/505 (10%)

Query: 13  MVSQIVDQCIVPQ-RFFVKSYGCQMNVYDSLRMEDMFFSQGY-ERVNSMDDADLIVLNTC 70
               ++   ++P+ R + ++YGCQMNV D   +  +  + GY E V   ++A++I +NTC
Sbjct: 100 QQESVMISDVMPRGRIYHETYGCQMNVNDMEIVLSIMKNAGYTESVEVPENAEIIFINTC 159

Query: 71  HIREKAAEKVYSFLGRIRNLKNSRI--------KEGGDLLVVVAGCVAQAEGEEILRRSP 122
            IR+ A  KV+  L     LK            +      V V GC+A+   ++IL    
Sbjct: 160 AIRDNAELKVWQRLNYFWFLKRQWKSNVASGRSQSAHPPKVSVLGCMAERLKDKILDSDK 219

Query: 123 IVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTI 182
           +V+VV GP  Y  LP LLE   +G++ ++T  S+E+ +  ++ V      K  ++AF+++
Sbjct: 220 MVDVVCGPDAYRDLPRLLEEVDYGQKGINTLLSLEETYADINPVRIS---KNSISAFVSV 276

Query: 183 QEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG 242
             GC+  C+FC+VP+TRG E SR +  +V E  +L   GV E+TLLGQNVN++       
Sbjct: 277 MRGCNNMCSFCIVPFTRGRERSRPVESIVKEVAELWKEGVKEVTLLGQNVNSYNDTSGVE 336

Query: 243 EKC-----------------------TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIK 279
                                      F+DLL  L+     +R RYT+ HP+D  D L+ 
Sbjct: 337 NPAEPAVSWELSDGFSSMCKVKHVGLRFADLLDRLATEFPEMRFRYTSPHPKDFPDDLLY 396

Query: 280 AHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGF 339
              D   +   +HLP QSGS  +L+ M R +T   Y  ++ +IR + PD+ ISSDFI GF
Sbjct: 397 VMRDRYNICKSIHLPAQSGSSAVLERMRRGYTREAYLDLVKKIRDIIPDMGISSDFICGF 456

Query: 340 PGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKL 398
            GET++D   T+ LV  + Y  A+ F YS R  T      ++ V ++VK  RL  L +  
Sbjct: 457 CGETEEDHEDTLSLVKAVCYDMAYMFAYSMREKTHAHRKYVDDVPDDVKQRRLTELIEAF 516

Query: 399 REQQVSFNDACVGQIIEVLIEKHGKE--KGKLVGRSPWLQSVVLN------------SKN 444
           R       D+ +G +  VL+E   K     +L+G+S     V                +N
Sbjct: 517 RGSTGQNYDSKIGTLQLVLVEGPNKRAPDTELIGKSDRGHRVSFTNLPIPDKVDNNGKRN 576

Query: 445 HNIGDIIKVRITDVKISTLYGELVV 469
             IGD ++V IT    ++L+GE + 
Sbjct: 577 PKIGDYVEVHITKSTRASLFGEALA 601


>gi|50842500|ref|YP_055727.1| MiaB family protein [Propionibacterium acnes KPA171202]
 gi|81611809|sp|Q6A8Z7|MIAB_PROAC RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|50840102|gb|AAT82769.1| MiaB family protein [Propionibacterium acnes KPA171202]
 gi|313764472|gb|EFS35836.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes
           HL013PA1]
 gi|313812959|gb|EFS50673.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes
           HL025PA1]
 gi|313816010|gb|EFS53724.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes
           HL059PA1]
 gi|313827761|gb|EFS65475.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes
           HL063PA2]
 gi|314915464|gb|EFS79295.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes
           HL005PA4]
 gi|314918252|gb|EFS82083.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes
           HL050PA1]
 gi|314920065|gb|EFS83896.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes
           HL050PA3]
 gi|314932079|gb|EFS95910.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes
           HL067PA1]
 gi|314955740|gb|EFT00140.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes
           HL027PA1]
 gi|314958155|gb|EFT02258.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes
           HL002PA1]
 gi|314967816|gb|EFT11915.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes
           HL037PA1]
 gi|315098519|gb|EFT70495.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes
           HL059PA2]
 gi|315105399|gb|EFT77375.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes
           HL030PA1]
 gi|315108344|gb|EFT80320.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes
           HL030PA2]
 gi|328754531|gb|EGF68147.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes
           HL025PA2]
          Length = 494

 Score =  405 bits (1041), Expect = e-111,   Method: Composition-based stats.
 Identities = 162/466 (34%), Positives = 258/466 (55%), Gaps = 24/466 (5%)

Query: 13  MVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYE---RVNSMDDADLIVLNT 69
           M +  +     P  + V +YGCQMNV+DS R+  +    GY    R +++  AD++V NT
Sbjct: 1   MPNNTLQHTEAP-TYRVVTYGCQMNVHDSERIAGLLEEAGYVPDPRTDTLAPADVVVFNT 59

Query: 70  CHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG 129
           C +RE A  ++Y  LG +  +K++       + + V GC+AQ + + ++ R+P V+VV G
Sbjct: 60  CAVRENADNRLYGTLGHMAAVKSAH----PGMQLAVGGCMAQKDKDTVVARAPWVDVVFG 115

Query: 130 PQTYYRLPELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
                 LP LL+RAR      V+ + S+      L        R    +A+++I  GC+ 
Sbjct: 116 THNVGSLPVLLKRARHNATAQVEIEESLVTFPSNLP-----ARRDSAYSAWVSISVGCNN 170

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS 248
            CTFC+VP  RG E  R   +++ E R L++ GV EITLLGQNVN++  +   G++  F+
Sbjct: 171 TCTFCIVPQLRGKETDRRPGEILSEIRALVNEGVQEITLLGQNVNSYGVQF--GDRGAFA 228

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
            LL +   I GL R+R+T+ HP   +D +I+A  +   +MP LH+P+QSGSD +L+ M R
Sbjct: 229 KLLRACGNIDGLERVRFTSPHPAAFTDDVIEAMAETPNVMPSLHMPLQSGSDEVLRRMRR 288

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
            + + ++  I+DR+R   P  AI++D IVGFPGETD DF  TM +V++  ++ AF+F+YS
Sbjct: 289 SYRSTKFLGILDRVREAIPHAAITTDIIVGFPGETDKDFAETMRIVEESRFSAAFTFQYS 348

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKG- 426
            R  TP   M +QV + V  ER   L + + +     N A VG+ +EV+  +  G++   
Sbjct: 349 IRPNTPAGVMKDQVPKPVVQERYEQLVELVDDIAWQENKAQVGRAVEVMFAQGEGRKDEA 408

Query: 427 --KLVGRSPWLQSVVL---NSKN-HNIGDIIKVRITDVKISTLYGE 466
             ++ GR+   + V +      +    GDI +V IT      L  +
Sbjct: 409 THRVTGRARDNRLVHVSLNPGDDVPRPGDIGEVVITSGHPHHLVAD 454


>gi|229815363|ref|ZP_04445698.1| hypothetical protein COLINT_02409 [Collinsella intestinalis DSM
           13280]
 gi|229809143|gb|EEP44910.1| hypothetical protein COLINT_02409 [Collinsella intestinalis DSM
           13280]
          Length = 453

 Score =  405 bits (1041), Expect = e-111,   Method: Composition-based stats.
 Identities = 160/448 (35%), Positives = 256/448 (57%), Gaps = 18/448 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + +F++++GCQMN++DS R+  +  S G    +S  DAD+++  TC +RE A  ++Y   
Sbjct: 10  KTYFIRTFGCQMNLHDSERVSGLLDSCGCLVASSPADADIVIFMTCCVREAADTRLY--- 66

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           G+  + K+      G  ++ V GC+AQ +GE +L     V+V+ G  +   + +LL  A 
Sbjct: 67  GQCSSCKSLPASPSGKRVIAVGGCIAQRDGEGLLTNLDNVDVIFGTHSIAHVADLLADAF 126

Query: 145 FGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
                 D D+ V  ++ +  +  D  ++R+    A++ I  GC+ FC++C+VPY RG E 
Sbjct: 127 A-----DGDHHVRVEEIDTGAATDMPWHRETAYHAWVPIMTGCNNFCSYCIVPYVRGREK 181

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR + ++VDE   L+  GV  ITLLGQNVN+  G+  D +   F++LL  + +  G+ R+
Sbjct: 182 SRPMDEIVDEVTGLVRQGVRSITLLGQNVNS-YGRDHDHDP-RFAELLRRVGD-TGIERI 238

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
            +T+SHP+D+    I A  ++  +MP LHL VQSGS RILK MNR++T  +Y  ++ R+R
Sbjct: 239 YFTSSHPKDLLPETIDAMAEVPAVMPQLHLAVQSGSSRILKLMNRKYTREQYLDLVQRVR 298

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              P+IA+++D IVGFPGE ++DF  T+ LVD+  +AQAF+F YS R GTP + +++   
Sbjct: 299 DRIPNIALTTDIIVGFPGEAEEDFEQTVSLVDEAKFAQAFTFIYSKREGTPAAKIVDPTP 358

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLN- 441
            +V  ER   L K + +    FN   +   + +LIE    K+   L G+SPW Q+V    
Sbjct: 359 RSVIQERFDRLVKHVEQTAFDFNQGSLDTTVPMLIEGTSKKDPNVLQGKSPWNQTVHCPV 418

Query: 442 ----SKNHNIGDIIKVRITDVKISTLYG 465
                    IG +I V +   +   L G
Sbjct: 419 PAGVDPTTLIGKVIDVHVDTARTWYLAG 446


>gi|242071517|ref|XP_002451035.1| hypothetical protein SORBIDRAFT_05g023010 [Sorghum bicolor]
 gi|241936878|gb|EES10023.1| hypothetical protein SORBIDRAFT_05g023010 [Sorghum bicolor]
          Length = 601

 Score =  405 bits (1041), Expect = e-111,   Method: Composition-based stats.
 Identities = 161/490 (32%), Positives = 246/490 (50%), Gaps = 49/490 (10%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGY-ERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           R + ++YGCQMN+ D   +  +  + GY E V   + A++I +NTC IR+ A +KV+  L
Sbjct: 95  RIYHETYGCQMNINDMEIVLSIMKNDGYDEIVPDPESAEIIFINTCAIRDNAEQKVWQRL 154

Query: 85  GRIRNLKNSRI--------KEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL 136
                LK            K      + V GC+A+   E+IL    +V+VV GP  Y  L
Sbjct: 155 NYFWFLKREWKANVAEGRSKSLRPPKIAVLGCMAERLKEKILDSDKMVDVVCGPDAYRDL 214

Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
           P LL+   +G + ++T  S+E+ +  ++ V         VTAF++I  GC+  C+FC+VP
Sbjct: 215 PRLLQEVDYGHKGMNTLLSLEETYADITPVRIS---DNSVTAFVSIMRGCNNMCSFCIVP 271

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG------------------- 237
           +TRG E SR +S +V E  +L   GV E+ LLGQNVN++                     
Sbjct: 272 FTRGRERSRPVSSIVREVGELWKAGVKEVMLLGQNVNSYNDTSEVEELEPGQNWQLSEGF 331

Query: 238 ---KGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP 294
                +      F+DLL  LS     +R R+T+ HP+D  D L+    D   +   +HLP
Sbjct: 332 SSMCKVKNMGLRFADLLDRLSLEYPEMRFRFTSPHPKDFPDELLYLMRDRYNICNLIHLP 391

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
            Q+GS  +L+ M R +T   Y +++ +IR+V PD+ +SSDFI GF GET+DD   T+ LV
Sbjct: 392 AQTGSTAVLERMRRGYTREAYLELVHKIRNVIPDVGLSSDFITGFCGETEDDHAETLSLV 451

Query: 355 DKIGYAQAFSFKYSPRLGTPGSN-MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQI 413
             +GY  A+ F YS R  T       + V E+VK  RL+ L    RE      D+ +G +
Sbjct: 452 RAVGYDMAYMFAYSMREKTHAHRNYEDDVPEDVKQRRLMELINTFRETTKKNYDSQIGTV 511

Query: 414 IEVLIEKHGKE--KGKLVGRSPWLQSV---------VLNSKNHN---IGDIIKVRITDVK 459
             VL+E   K   K +L+G++     V             +      +GD ++V+I    
Sbjct: 512 QLVLVEGPNKRAPKTELIGKTDRGHKVSFASVPIPHTFEGEEARKPVVGDFVEVKILRSS 571

Query: 460 ISTLYGELVV 469
            +TL+GE + 
Sbjct: 572 TATLFGEPIA 581


>gi|327330240|gb|EGE71989.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes
           HL097PA1]
          Length = 494

 Score =  405 bits (1041), Expect = e-111,   Method: Composition-based stats.
 Identities = 162/466 (34%), Positives = 258/466 (55%), Gaps = 24/466 (5%)

Query: 13  MVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYE---RVNSMDDADLIVLNT 69
           M +  +     P  + V +YGCQMNV+DS R+  +    GY    R +++  AD++V NT
Sbjct: 1   MPNNTLQHTEAP-TYRVVTYGCQMNVHDSERIAGLLEEAGYVPDPRTDTLAPADVVVFNT 59

Query: 70  CHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG 129
           C +RE A  ++Y  LG +  +K++       + + V GC+AQ + + ++ R+P V+VV G
Sbjct: 60  CAVRESADNRLYGTLGHMAAVKSAH----PGMQLAVGGCMAQKDKDTVVARAPWVDVVFG 115

Query: 130 PQTYYRLPELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
                 LP LL+RAR      V+ + S+      L        R    +A+++I  GC+ 
Sbjct: 116 THNVGSLPVLLKRARHNATAQVEIEESLVTFPSNLP-----ARRDSAYSAWVSISVGCNN 170

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS 248
            CTFC+VP  RG E  R   +++ E R L++ GV EITLLGQNVN++  +   G++  F+
Sbjct: 171 TCTFCIVPQLRGKETDRRPGEILSEIRALVNEGVQEITLLGQNVNSYGVQF--GDRGAFA 228

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
            LL +   I GL R+R+T+ HP   +D +I+A  +   +MP LH+P+QSGSD +L+ M R
Sbjct: 229 KLLRACGNIDGLERVRFTSPHPAAFTDDVIEAMAETPNVMPSLHMPLQSGSDEVLRRMRR 288

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
            + + ++  I+DR+R   P  AI++D IVGFPGETD DF  TM +V++  ++ AF+F+YS
Sbjct: 289 SYRSTKFLGILDRVREAIPHAAITTDIIVGFPGETDKDFAETMRIVEESRFSAAFTFQYS 348

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKG- 426
            R  TP   M +QV + V  ER   L + + +     N A VG+ +EV+  +  G++   
Sbjct: 349 IRPNTPAGVMKDQVPKPVVQERYEQLVELVDDIAWQENKAQVGRAVEVMFAQGEGRKDEA 408

Query: 427 --KLVGRSPWLQSVVL---NSKN-HNIGDIIKVRITDVKISTLYGE 466
             ++ GR+   + V +      +    GDI +V IT      L  +
Sbjct: 409 THRVTGRARDNRLVHVSLNPGDDVPRPGDIGEVVITSGHPHHLVAD 454


>gi|315080658|gb|EFT52634.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes
           HL078PA1]
          Length = 494

 Score =  405 bits (1041), Expect = e-111,   Method: Composition-based stats.
 Identities = 162/466 (34%), Positives = 258/466 (55%), Gaps = 24/466 (5%)

Query: 13  MVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYE---RVNSMDDADLIVLNT 69
           M +  +     P  + V +YGCQMNV+DS R+  +    GY    R +++  AD++V NT
Sbjct: 1   MPNNTLQHTEAP-TYRVVTYGCQMNVHDSERIAGLLEEAGYVPDPRTDTLAPADVVVFNT 59

Query: 70  CHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG 129
           C +RE A  ++Y  LG +  +K++       + + V GC+AQ + + ++ R+P V+VV G
Sbjct: 60  CAVRENADNRLYGTLGHMAAVKSAH----PGMQLAVGGCMAQKDKDTVVARAPWVDVVFG 115

Query: 130 PQTYYRLPELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
                 LP LL+RAR      V+ + S+      L        R    +A+++I  GC+ 
Sbjct: 116 THNVGSLPVLLKRARHNATAQVEIEESLVTFPSNLP-----ARRDSAYSAWVSISVGCNN 170

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS 248
            CTFC+VP  RG E  R   +++ E R L++ GV EITLLGQNVN++  +   G++  F+
Sbjct: 171 TCTFCIVPQLRGKETDRRPGEILSEIRALVNEGVQEITLLGQNVNSYGVQF--GDRGAFA 228

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
            LL +   I GL R+R+T+ HP   +D +I+A  +   +MP LH+P+QSGSD +L+ M R
Sbjct: 229 KLLRACGNIDGLERVRFTSPHPAAFTDDVIEAMAETPNVMPSLHMPLQSGSDEVLRRMRR 288

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
            + + ++  I+DR+R   P  AI++D IVGFPGETD DF  TM +V++  ++ AF+F+YS
Sbjct: 289 SYRSTKFLGILDRVREAIPHAAITTDIIVGFPGETDKDFAETMRIVEESRFSAAFTFQYS 348

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKG- 426
            R  TP   M +QV + V  ER   L + + +     N A VG+ +EV+  +  G++   
Sbjct: 349 IRPNTPAGVMKDQVPKPVVQERYEQLVELVDDIAWQENKAQVGRAVEVMFAQGEGRKDEA 408

Query: 427 --KLVGRSPWLQSVVL---NSKN-HNIGDIIKVRITDVKISTLYGE 466
             ++ GR+   + V +      +    GDI +V IT      L  +
Sbjct: 409 THRVTGRARDNRLVHVSLNPGDDVPRPGDIGEVVITSGHPHHLVAD 454


>gi|42783437|ref|NP_980684.1| hypothetical protein BCE_4391 [Bacillus cereus ATCC 10987]
 gi|206978420|ref|ZP_03239289.1| RNA modification enzyme, MiaB family [Bacillus cereus H3081.97]
 gi|217961800|ref|YP_002340370.1| RNA modification enzyme, MiaB family [Bacillus cereus AH187]
 gi|222097755|ref|YP_002531812.1| fe-s oxidoreductase [Bacillus cereus Q1]
 gi|229141048|ref|ZP_04269590.1| hypothetical protein bcere0013_41420 [Bacillus cereus BDRD-ST26]
 gi|229198438|ref|ZP_04325142.1| hypothetical protein bcere0001_39660 [Bacillus cereus m1293]
 gi|42739366|gb|AAS43292.1| conserved hypothetical protein [Bacillus cereus ATCC 10987]
 gi|206743376|gb|EDZ54814.1| RNA modification enzyme, MiaB family [Bacillus cereus H3081.97]
 gi|217065337|gb|ACJ79587.1| RNA modification enzyme, MiaB family [Bacillus cereus AH187]
 gi|221241813|gb|ACM14523.1| Fe-S oxidoreductase [Bacillus cereus Q1]
 gi|228584941|gb|EEK43055.1| hypothetical protein bcere0001_39660 [Bacillus cereus m1293]
 gi|228642326|gb|EEK98615.1| hypothetical protein bcere0013_41420 [Bacillus cereus BDRD-ST26]
 gi|324328214|gb|ADY23474.1| Fe-S oxidoreductase [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 450

 Score =  405 bits (1041), Expect = e-111,   Method: Composition-based stats.
 Identities = 135/449 (30%), Positives = 236/449 (52%), Gaps = 21/449 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
                + GC++N Y++  +  +F   GYER      AD+ V+NTC +     +K    + 
Sbjct: 3   TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKADVYVINTCTVTNTGDKKSRQVIR 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R        +++  D ++ V GC AQ    EI+   P V++VVG Q   ++   +E  R 
Sbjct: 63  RA-------VRQNPDAVICVTGCYAQTSPAEIMA-IPGVDIVVGTQDREKMLGYIEEFRK 114

Query: 146 GKRVVDTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            ++ ++   ++     +E L +            A L IQEGC+ FCTFC++P+ RG+  
Sbjct: 115 ERQPINAVRNIMKTRVYEELDVP----YFTDRTRASLKIQEGCNNFCTFCIIPWARGLMR 170

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKGLVR 262
           SR   +V+ +A++L+D G  EI L G +     G G D +    + LL  + +E+ GL R
Sbjct: 171 SRDGKEVIKQAQQLVDAGYKEIVLTGIHTG---GYGEDIKDYNLAGLLRDMEAEVDGLKR 227

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LR ++     +SD +I+     +V++ +LH+P+QSGS+ +LK M R++T   +++ +DR+
Sbjct: 228 LRISSIEASQISDEVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRL 287

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           +   P +AI+SD IVGFPGET+++F  T + + +  +++   F YS R GTP + M +QV
Sbjct: 288 KEALPGLAITSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQV 347

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK---HGKEKGKLVGRSPWLQSVV 439
            E+VK +R+  L +   +    +     G+++E++ E+    G  +G  VG +     +V
Sbjct: 348 PEDVKNDRVHRLIELSNQLAKEYASQFEGEVLEIIPEEQFKEGDREGLYVGYTDNYLKIV 407

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG ++KV+IT         + V
Sbjct: 408 FEGSEELIGKLVKVKITKAGYPYNEAQFV 436


>gi|313807502|gb|EFS45989.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes
           HL087PA2]
 gi|313818544|gb|EFS56258.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes
           HL046PA2]
 gi|313820311|gb|EFS58025.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes
           HL036PA1]
 gi|313822882|gb|EFS60596.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes
           HL036PA2]
 gi|313825186|gb|EFS62900.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes
           HL063PA1]
 gi|314925198|gb|EFS89029.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes
           HL036PA3]
 gi|314960019|gb|EFT04121.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes
           HL002PA2]
 gi|314978441|gb|EFT22535.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes
           HL072PA2]
 gi|314988142|gb|EFT32233.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes
           HL005PA2]
 gi|314989946|gb|EFT34037.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes
           HL005PA3]
 gi|315084330|gb|EFT56306.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes
           HL027PA2]
 gi|315085672|gb|EFT57648.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes
           HL002PA3]
 gi|315088906|gb|EFT60882.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes
           HL072PA1]
 gi|327331955|gb|EGE73692.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes
           HL096PA3]
 gi|327443156|gb|EGE89810.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes
           HL013PA2]
 gi|328753487|gb|EGF67103.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes
           HL020PA1]
 gi|332675417|gb|AEE72233.1| (dimethylallyl)adenosine tRNA methylthiotransferase MiaB
           [Propionibacterium acnes 266]
          Length = 494

 Score =  405 bits (1041), Expect = e-111,   Method: Composition-based stats.
 Identities = 162/466 (34%), Positives = 258/466 (55%), Gaps = 24/466 (5%)

Query: 13  MVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYE---RVNSMDDADLIVLNT 69
           M +  +     P  + V +YGCQMNV+DS R+  +    GY    R +++  AD++V NT
Sbjct: 1   MPNNTLQHTEAP-TYRVVTYGCQMNVHDSERIAGLLEEAGYVPDPRTDTLAPADVVVFNT 59

Query: 70  CHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG 129
           C +RE A  ++Y  LG +  +K++       + + V GC+AQ + + ++ R+P V+VV G
Sbjct: 60  CAVRENADNRLYGTLGHMAAVKSAH----PGMQLAVGGCMAQKDKDTVVARAPWVDVVFG 115

Query: 130 PQTYYRLPELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
                 LP LL+RAR      V+ + S+      L        R    +A+++I  GC+ 
Sbjct: 116 THNVGSLPVLLKRARHNATAQVEIEESLVTFPSNLP-----ARRDSAYSAWVSISVGCNN 170

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS 248
            CTFC+VP  RG E  R   +++ E R L++ GV EITLLGQNVN++  +   G++  F+
Sbjct: 171 TCTFCIVPQLRGKETDRRPGEILSEIRALVNEGVQEITLLGQNVNSYGVQF--GDRGAFA 228

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
            LL +   I GL R+R+T+ HP   +D +I+A  +   +MP LH+P+QSGSD +L+ M R
Sbjct: 229 KLLRACGNIDGLERVRFTSPHPAAFTDDVIEAMAETPNVMPSLHMPLQSGSDEVLRRMRR 288

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
            + + ++  I+DR+R   P  AI++D IVGFPGETD DF  TM +V++  ++ AF+F+YS
Sbjct: 289 SYRSTKFLGILDRVREAIPHAAITTDIIVGFPGETDKDFAETMRIVEESRFSAAFTFQYS 348

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKG- 426
            R  TP   M +QV + V  ER   L + + +     N A VG+ +EV+  +  G++   
Sbjct: 349 IRPNTPAGVMKDQVPKPVVQERYEQLVELVDDIAWQENKAQVGRAVEVMFAQGEGRKDEA 408

Query: 427 --KLVGRSPWLQSVVL---NSKN-HNIGDIIKVRITDVKISTLYGE 466
             ++ GR+   + V +      +    GDI +V IT      L  +
Sbjct: 409 THRVTGRARDNRLVHVSLNPGDDVPRPGDIGEVVITSGHPHHLVAD 454


>gi|89894712|ref|YP_518199.1| hypothetical protein DSY1966 [Desulfitobacterium hafniense Y51]
 gi|123279971|sp|Q24W37|RIMO_DESHY RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|89334160|dbj|BAE83755.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 445

 Score =  405 bits (1041), Expect = e-111,   Method: Composition-based stats.
 Identities = 130/450 (28%), Positives = 217/450 (48%), Gaps = 17/450 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++  V + GC  N  DS  M     ++ Y+ VN  + AD+I++NTC   E A  +    +
Sbjct: 6   KKVAVVTLGCPKNQVDSEIMTGHMMTK-YQIVNEPEQADIIIINTCTFIESAKAESIDMI 64

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            ++   K      G    +V  GC+AQ  G+E+L   P ++ ++G      + E LE A 
Sbjct: 65  LQMSQYKEE----GQCQTLVATGCLAQRYGDELLAEIPELDGIMGTGNVAEILETLEEAE 120

Query: 145 FGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             K R +  +       E +  V     +     A++ + EGCD +CT+C++P+ RG   
Sbjct: 121 KSKVRRISAEAPAFIYDETMPRVRLSPKQ----YAYVKVAEGCDNYCTYCIIPHVRGHFR 176

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR+   ++ E   +   GV E+ L+ Q+     GK   GE      L+  ++ I+G+  +
Sbjct: 177 SRTQESILREVEAMASEGVKEVLLIAQDTT-RYGKDRYGE-YRLPSLIKEIARIEGIEWI 234

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R    +P   +D LI    +   +  YL LP+Q   D++L  MNRR T  E   +I ++R
Sbjct: 235 RLMYCYPELFTDELITVMKETPKVCRYLDLPLQHAHDKVLAEMNRRGTIREAEGLIHKLR 294

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              PDI + +  I GFPGET+++F+A ++   KI + +  +F YS    TP +   +QV 
Sbjct: 295 QEIPDIRLRTTMITGFPGETEEEFQAVVEFAKKIRFDRLGAFAYSQEESTPAAQREDQVP 354

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK---GKLVGRSPWLQSVVL 440
           E ++ +R   L +   +         VGQ ++VLIE+   ++   G+  G +P +  VV 
Sbjct: 355 EEIRQQRRDQLMELQHDIAYEQQQRWVGQTLKVLIEEALPDQRWVGRSEGDAPEIDGVVY 414

Query: 441 NS--KNHNIGDIIKVRITDVKISTLYGELV 468
                   IGD + V+IT      L GE+V
Sbjct: 415 VDSPGELEIGDFVLVKITRADSYDLMGEVV 444


>gi|167533556|ref|XP_001748457.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163772976|gb|EDQ86621.1| predicted protein [Monosiga brevicollis MX1]
          Length = 1020

 Score =  405 bits (1041), Expect = e-111,   Method: Composition-based stats.
 Identities = 147/489 (30%), Positives = 246/489 (50%), Gaps = 38/489 (7%)

Query: 15  SQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIRE 74
           + I +Q ++ ++  +++YGCQMNV D+     +  + G  R ++ ++AD+ +L TC IRE
Sbjct: 107 APIDEQSLLGRKVHIEAYGCQMNVSDAEIAWSILKNAGCVRCDTAEEADVTLLVTCAIRE 166

Query: 75  KAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYY 134
            A  K++S L +++  K    +      + V GC+A+    ++L +   +++V GP  Y 
Sbjct: 167 NAENKIWSRLNQLKAHKRRLGRTRNF-QIGVLGCMAERLKHKLLEQEKAIDLVAGPDAYR 225

Query: 135 RLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCV 194
            LP +L  +  G+  V+   S+++ +  ++ V           AF++IQ GC   C++C+
Sbjct: 226 DLPRMLMDSAQGQAQVNVLLSLDETYADITPVRTN---PNSPAAFVSIQRGCANNCSYCI 282

Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR------------------ 236
           VP+TRG E SR +  +V+E   L   GV E+TLLGQNVN++R                  
Sbjct: 283 VPFTRGRERSRQIETIVEEVAHLSRQGVKEVTLLGQNVNSYRDLTGIDDVRNEPVVSMAK 342

Query: 237 GKGLDGEKCT----FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLH 292
           G G   +       F +LL +++E+   +R+R+T+ HP+D  D +++A      +   +H
Sbjct: 343 GFGTIYKPRRGGRGFGELLRAVAEVDPTMRIRFTSPHPKDFPDDVLEAIATTPNICKQIH 402

Query: 293 LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352
           +P QSGS R+L+ M R HT   Y  ++  +R V P +A+SSDFI GF GET+ D   T  
Sbjct: 403 IPAQSGSTRMLELMRRNHTREAYLDLVQHMRQVIPGVALSSDFIAGFCGETEADHEDTRS 462

Query: 353 LVDKIGYAQAFSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVG 411
           L++ + Y  AF F YS R  T     M + V E+VK  RL  ++ +        N   +G
Sbjct: 463 LIEMVDYDMAFLFAYSMRAKTHAYHRMQDDVPEDVKKRRLEEIRDQFYGGATLKNQRRIG 522

Query: 412 QIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNSKN----------HNIGDIIKVRITDVKI 460
            +  VL+EK  +    +  GR+      V                N+G+ + V+I     
Sbjct: 523 SLQLVLVEKRSRRNQDEWSGRTDGNIRAVFTDAEVPDVQGLLRRANVGEYVVVQIEGATA 582

Query: 461 STLYGELVV 469
            TL G  + 
Sbjct: 583 MTLRGRPLA 591


>gi|228960578|ref|ZP_04122226.1| hypothetical protein bthur0005_40430 [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|296504804|ref|YP_003666504.1| Fe-S oxidoreductase [Bacillus thuringiensis BMB171]
 gi|228799091|gb|EEM46060.1| hypothetical protein bthur0005_40430 [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|296325856|gb|ADH08784.1| Fe-S oxidoreductase [Bacillus thuringiensis BMB171]
          Length = 450

 Score =  405 bits (1040), Expect = e-111,   Method: Composition-based stats.
 Identities = 136/449 (30%), Positives = 237/449 (52%), Gaps = 21/449 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
                + GC++N Y++  +  +F   GYER      AD+ V+NTC +     +K    + 
Sbjct: 3   TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKADVYVINTCTVTNTGDKKSRQVIR 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R        +++  D ++ V GC AQ    EI+   P V++VVG Q   ++   +E  R 
Sbjct: 63  RA-------VRQNPDAVICVTGCYAQTSPAEIMA-IPGVDIVVGTQDREKMLGYIEEFRK 114

Query: 146 GKRVVDTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            ++ ++   ++     +E L +            A L IQEGC+ FCTFC++P+ RG+  
Sbjct: 115 ERQPINAVRNIMKTRVYEELDVP----YFTDRTRASLKIQEGCNNFCTFCIIPWARGLMR 170

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKGLVR 262
           SR   +V+ +A++L+D G  EI L G +     G G D +    + LL  + +E+ GL R
Sbjct: 171 SRDGKEVIKQAQQLVDAGYKEIVLTGIHTG---GYGEDIKDYNLAGLLRDMEAEVGGLKR 227

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LR ++     +SD +I+     +V++ +LH+P+QSGS+ +LK M R++T   +++ +DR+
Sbjct: 228 LRISSIEASQISDEVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRL 287

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           +   P +AI+SD IVGFPGET+++F  T + + +  +++   F YS R GTP + M +QV
Sbjct: 288 KEALPGLAITSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQV 347

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK---HGKEKGKLVGRSPWLQSVV 439
            E+VK +R+  L +   +    +  A  G+++E++ E+    G  +G  VG +     +V
Sbjct: 348 PEDVKNDRVHRLIELSNQLAKEYASAFEGEVLEIIPEEQFKEGDREGLYVGYTDNYLKIV 407

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG ++KV+IT         + V
Sbjct: 408 FEGSEELIGKLVKVKITKAGYPYNEAQFV 436


>gi|194740916|ref|XP_001952936.1| GF17521 [Drosophila ananassae]
 gi|190625995|gb|EDV41519.1| GF17521 [Drosophila ananassae]
          Length = 577

 Score =  405 bits (1040), Expect = e-111,   Method: Composition-based stats.
 Identities = 151/475 (31%), Positives = 244/475 (51%), Gaps = 33/475 (6%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++   + +GCQMN  D+  +  +    GY R    +DAD+I+L TC +R+ A +++++ L
Sbjct: 94  RKVHFEVFGCQMNTNDTEVVWSVLRENGYARCQDPEDADIIMLVTCAVRDGAEQRIWNRL 153

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             +R +K+ R      L + V GC+A+   E++L +   V+V+ GP +Y  LP LL  +R
Sbjct: 154 KHLRAMKSKRSPRRHPLQLSVLGCMAERLKEKLLEKEQCVDVIAGPDSYKDLPRLLAISR 213

Query: 145 F-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             G   ++   S+++ +  +  V          TA+++I  GCD  CT+C+VP+TRG E 
Sbjct: 214 HYGNSAINVLLSLDETYADVMPVRLN---SESPTAYVSIMRGCDNMCTYCIVPFTRGRER 270

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK------------------- 244
           SR L  ++ E R L + GV E+TLLGQNVN++R  G   EK                   
Sbjct: 271 SRPLESILTEVRALQEQGVKEVTLLGQNVNSYRDGGTSQEKDPNSVPVPGFKTVYKPKSG 330

Query: 245 -CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
             TFS LL S++E    +R+R+T+ HP+D SD +++   D   +   LHLP QSG+ ++L
Sbjct: 331 GITFSRLLRSVAEAVPEMRIRFTSPHPKDFSDDVLRVIRDYPNVCKQLHLPAQSGNTKVL 390

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           + M R ++   Y  ++DRIR   P++ +SSDFI GF GET+++F+ T+ L+ ++ Y  A+
Sbjct: 391 ERMRRGYSREAYLHLVDRIRLFLPNVGLSSDFICGFCGETEEEFQDTVSLIQQVQYNVAY 450

Query: 364 SFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422
            F YS R  T       + V   VK ERL  + +  R      +    G    +LIE   
Sbjct: 451 LFAYSMREKTTAHRRFKDDVPLLVKNERLKRMVEVFRAGATELHKKMEGHEQLILIEGKS 510

Query: 423 KEK-GKLVGRSPWLQSVVLNSKNHN-------IGDIIKVRITDVKISTLYGELVV 469
           K       GR+     V++ +           IGD +   I +     L G+ + 
Sbjct: 511 KRSASHWFGRNDANIKVIVPAGKPLGSDQPIQIGDFVVAHIEESNSQVLKGKPLA 565


>gi|229174985|ref|ZP_04302504.1| hypothetical protein bcere0006_40680 [Bacillus cereus MM3]
 gi|228608446|gb|EEK65749.1| hypothetical protein bcere0006_40680 [Bacillus cereus MM3]
          Length = 450

 Score =  405 bits (1040), Expect = e-110,   Method: Composition-based stats.
 Identities = 136/449 (30%), Positives = 236/449 (52%), Gaps = 21/449 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
                + GC++N Y++  +  +F   GYER      AD+ V+NTC +     +K    + 
Sbjct: 3   TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKADVYVINTCTVTNTGDKKSRQVIR 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R        +++  D ++ V GC AQ    EI+   P V++VVG Q   ++   +E  R 
Sbjct: 63  RA-------VRQNPDAVICVTGCYAQTSPAEIMA-IPGVDIVVGTQDREKMLGYIEEFRK 114

Query: 146 GKRVVDTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            ++ ++   ++     +E L +            A L IQEGC+ FCTFC++P+ RG+  
Sbjct: 115 ERQPINAVRNIMKTRVYEELDVP----YFTDRTRASLKIQEGCNNFCTFCIIPWARGLMR 170

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKGLVR 262
           SR   +V+ +A++L+D G  EI L G +     G G D +    + LL  + +E+ GL R
Sbjct: 171 SRDGKEVIKQAQQLVDAGYKEIVLTGIHTG---GYGEDIKDYNLAGLLRDMEAEVGGLKR 227

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LR ++     +SD +I+     +V++ +LH+P+QSGS+ +LK M R++T   +++ +DR+
Sbjct: 228 LRISSIEASQISDEVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRL 287

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           +   P +AI+SD IVGFPGET+++F  T + + +  +++   F YS R GTP + M +QV
Sbjct: 288 KEALPGLAITSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQV 347

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK---HGKEKGKLVGRSPWLQSVV 439
            E+VK +R+  L +   +    +     G+++E++ E+    G  KG  VG +     +V
Sbjct: 348 PEDVKNDRVHRLIELSNQLAKEYASQFEGEVLEIIPEEQFKEGDRKGLYVGYTDNYLKIV 407

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG ++KV+IT         + V
Sbjct: 408 FEGSEELIGKLVKVKITKAGYPYNEAQFV 436


>gi|154505306|ref|ZP_02042044.1| hypothetical protein RUMGNA_02820 [Ruminococcus gnavus ATCC 29149]
 gi|153794349|gb|EDN76769.1| hypothetical protein RUMGNA_02820 [Ruminococcus gnavus ATCC 29149]
          Length = 440

 Score =  405 bits (1040), Expect = e-110,   Method: Composition-based stats.
 Identities = 147/451 (32%), Positives = 224/451 (49%), Gaps = 22/451 (4%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
               S GC  N+ D+  M  M  S+GY+ V     AD+IV+NTC     A E+    +  
Sbjct: 3   ILFISLGCDKNLVDTEVMLGMLASRGYQMVEEETQADVIVINTCCFVHDAKEESIQNILE 62

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           +   K    KEG    ++V GC+AQ   +EIL   P V+ V+G   Y ++ + ++ A  G
Sbjct: 63  MAEYK----KEGRLKALIVTGCLAQRYRQEILDEIPEVDAVLGTTAYDKILDAIDEALKG 118

Query: 147 KRVV---DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
              +   DTD   E + +RL    G +       A+L I EGCDK CT+C++P  RG   
Sbjct: 119 HHTLTLADTDLLPEVETKRLVTTGGHF-------AYLKIAEGCDKHCTYCIIPKIRGNFR 171

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           S  + Q++ EA  L + GV E+ L+ Q      GK L GEK +   LL  L +I G+  +
Sbjct: 172 SVPMEQLLSEAEYLAEQGVKELILVAQETT-LYGKDLYGEK-SLHKLLRELCKISGIRWI 229

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R    +P ++ D LI+   +   +  YL LP+Q  +D ILK M RR T  E   II ++R
Sbjct: 230 RILYCYPEEIYDELIQTIKEEPKICHYLDLPIQHANDEILKRMGRRTTKQELIDIISKLR 289

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              PDIA+ +  I GFPGET +     M+ VD++ + +   F YSP   T  + M  Q++
Sbjct: 290 REIPDIALRTTLITGFPGETKEQHEELMEFVDEMEFDRLGVFTYSPEEDTAAARMEGQIE 349

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVV 439
           E VK ER   L +  +E      +  VG+ + V+IE    ++   VGR+    P +  ++
Sbjct: 350 EEVKEERQAELMELQQEIAFDTAENMVGKEVLVMIEGKVADENAYVGRTYRDAPNVDGLI 409

Query: 440 LNSKNHNI--GDIIKVRITDVKISTLYGELV 468
             +    +  GD  KV+++      L G L+
Sbjct: 410 FVNTEEELMSGDFAKVKVSGAVDYDLIGGLI 440


>gi|222151475|ref|YP_002560631.1| hypothetical protein MCCL_1228 [Macrococcus caseolyticus JCSC5402]
 gi|222120600|dbj|BAH17935.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
          Length = 448

 Score =  405 bits (1040), Expect = e-110,   Method: Composition-based stats.
 Identities = 134/446 (30%), Positives = 233/446 (52%), Gaps = 17/446 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
                + GC++N Y++  +  +F    YERV+   +AD+ V+NTC +     +K    + 
Sbjct: 3   TVAFHTLGCKVNHYETEAIWQLFKDADYERVDFEQNADVYVINTCTVTNTGDKKSRQVIR 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R        I+   D ++ V GC AQ    EI+  +  V++VVG Q  +++   +E+ R 
Sbjct: 63  RA-------IRRNPDAVICVTGCYAQTSSAEIMDIA-GVDIVVGTQDRHKMLPYIEQYRA 114

Query: 146 GKRVVD--TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            ++ ++  T+      +E L +            A L IQEGC+ FCTFC++P+ RG+  
Sbjct: 115 ERQPINGVTNIMKNRTYEELDVP----YFTDRTRASLKIQEGCNNFCTFCIIPWARGLMR 170

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR   +VV +A +L+ +G  EI L G +     G G D +    + LL  L  I GL R+
Sbjct: 171 SRDPKEVVRQATQLVQSGYQEIVLTGIHTG---GYGEDLKDYNLAQLLRDLETIDGLKRI 227

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R ++     ++D +I      + ++ +LH+P+QSGSD +LK M R++T   + + + ++ 
Sbjct: 228 RISSIEASQLTDEVIDVIDKSNKVVRHLHIPLQSGSDTVLKRMRRKYTMSHFSERLKKLH 287

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           ++ P +A++SD IVGFPGET+++F+ T D + + G+++   F YS R GTP + M +Q+D
Sbjct: 288 AIMPGLAVTSDVIVGFPGETEEEFQETYDFILQHGFSELHVFPYSMRTGTPAARMTDQID 347

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
           E++K +R+  L     +    +     G ++EV+ E+       LVG +     V   + 
Sbjct: 348 ESIKNDRVHRLITLSDQLAKEYASRFEGDVLEVIPEEKASNGNMLVGYTDNYLKVQFEAD 407

Query: 444 NHNIGDIIKVRITDVKISTLYGELVV 469
            H IG+++KV+I         G  V 
Sbjct: 408 EHLIGELVKVKIDKSGYPLNEGTFVT 433


>gi|229086881|ref|ZP_04219040.1| hypothetical protein bcere0022_34550 [Bacillus cereus Rock3-44]
 gi|228696391|gb|EEL49217.1| hypothetical protein bcere0022_34550 [Bacillus cereus Rock3-44]
          Length = 450

 Score =  405 bits (1040), Expect = e-110,   Method: Composition-based stats.
 Identities = 135/449 (30%), Positives = 235/449 (52%), Gaps = 21/449 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
                + GC++N Y++  +  +F   GYER      AD+ V+NTC +     +K    + 
Sbjct: 3   TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKADVYVINTCTVTNTGDKKSRQVIR 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R        +++  D ++ V GC AQ    EI+   P V++VVG Q   ++   +E  R 
Sbjct: 63  RA-------VRQNPDAVICVTGCYAQTSPAEIMA-IPGVDIVVGTQDREKMLGYIEEFRK 114

Query: 146 GKRVVDTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            ++ ++   ++     +E L +            A L IQEGC+ FCTFC++P+ RG+  
Sbjct: 115 ERQPINAVRNIMKTRVYEELDVP----YFTDRTRASLKIQEGCNNFCTFCIIPWARGLMR 170

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKGLVR 262
           SR   +V+ +A++L+D G  EI L G +     G G D +    + LL  + +E+ GL R
Sbjct: 171 SRDGKEVIHQAQQLVDAGYKEIVLTGIHTG---GYGEDIKDYNLAGLLRDMEAEVSGLKR 227

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LR ++     +SD +I+     +V++ +LH+P+QSGS+ +LK M R++T   +++ +DR+
Sbjct: 228 LRISSIEASQISDEVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRL 287

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           +   P +AI+SD IVGFPGET+++F  T + + +  +++   F YS R GTP + M +Q+
Sbjct: 288 KEALPGLAITSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQI 347

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKH---GKEKGKLVGRSPWLQSVV 439
            E VK +R+  L +   +    +     G+++E++ E+    G  +G  VG +     VV
Sbjct: 348 PEEVKNDRVHRLIELSNQLAKEYASQFEGEVLEIIPEEPFKDGDREGLYVGYTDNYLKVV 407

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG ++KV+IT         + V
Sbjct: 408 FEGSEELIGKLVKVKITKAGYPYNEAQFV 436


>gi|251771426|gb|EES52005.1| TRNA-i(6)A37 modification enzyme (MiaB) [Leptospirillum
           ferrodiazotrophum]
          Length = 452

 Score =  405 bits (1040), Expect = e-110,   Method: Composition-based stats.
 Identities = 170/443 (38%), Positives = 253/443 (57%), Gaps = 15/443 (3%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           + ++++GCQMNV+DS RM  +    GY   +  + A LI++NTC +R+KA +K  S LGR
Sbjct: 18  YHIRTFGCQMNVHDSERMAGILAEAGYRSTDDPEAASLIIVNTCTVRDKADQKALSDLGR 77

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           +R LK    K  G+ ++ V GC+A+ E E + R  P +++V GP     L  +++R R  
Sbjct: 78  LRLLK----KGEGEKILAVTGCMAEREQERLHRIMPEIDLVAGPAQVRNLLPMIDRLRAE 133

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           KR     + +   F+   +      R  GVTA +T+QEGCDK C++CVVP TRG E SR 
Sbjct: 134 KR-----FQLGRDFDLPEMTTPPAIRPPGVTALVTVQEGCDKSCSYCVVPRTRGPERSRP 188

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
           ++ +V E R L+  G  E+TLLGQNVN   GKG   E   F+DLL +L  ++GL+R+R+T
Sbjct: 189 IASIVSEVRGLVSQGYREVTLLGQNVNG-YGKGAP-EGEGFADLLLALDRVEGLLRIRFT 246

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
           TSHP D+    I A      +MP+LHLPVQSGSDR+L+ M R +T  EYR+ I  +R+  
Sbjct: 247 TSHPSDLDLPTIGAMARSSKVMPHLHLPVQSGSDRMLRLMERGYTLEEYREKIRHLRAAI 306

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           PD+A+++D IVGF  E+++DF+ T++ V +  +  AF F YSPR GTP        D +V
Sbjct: 307 PDVALTTDLIVGFCEESEEDFQRTLEAVREFRFDGAFCFIYSPRPGTPAYGREGLPDRSV 366

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV----LNS 442
             +R   L   L    +  N   +G   E+L+E+  +      GRSP  ++V        
Sbjct: 367 SLDRFRRLDDLLTGMVLEKNRGRIGATEEILVERTDEASRTFSGRSPHFRTVRGRLSDPG 426

Query: 443 KNHNIGDIIKVRITDVKISTLYG 465
              + G+  +V +     + L G
Sbjct: 427 PLPSPGETARVAVESCTKAGLAG 449


>gi|314966778|gb|EFT10877.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes
           HL082PA2]
          Length = 492

 Score =  405 bits (1040), Expect = e-110,   Method: Composition-based stats.
 Identities = 162/466 (34%), Positives = 258/466 (55%), Gaps = 24/466 (5%)

Query: 13  MVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYE---RVNSMDDADLIVLNT 69
           M +  +     P  + V +YGCQMNV+DS R+  +    GY    R +++  AD++V NT
Sbjct: 1   MPNNTLQHTEAP-TYRVVTYGCQMNVHDSERIAGLLEEAGYVPDPRTDTLAPADVVVFNT 59

Query: 70  CHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG 129
           C +RE A  ++Y  LG +  +K++       + + V GC+AQ + + ++ R+P V+VV G
Sbjct: 60  CAVRENADNRLYGTLGHMAAVKSAH----PGMQLAVGGCMAQKDKDAVVARAPWVDVVFG 115

Query: 130 PQTYYRLPELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
                 LP LL+RAR      V+ + S+      L        R    +A+++I  GC+ 
Sbjct: 116 THNVGSLPVLLKRARHNATAQVEIEESLVTFPSNLP-----ARRDSAYSAWVSISVGCNN 170

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS 248
            CTFC+VP  RG E  R   +++ E R L+D GV EITLLGQNVN++  +   G++  F+
Sbjct: 171 TCTFCIVPQLRGKETDRRPGEILSEIRALVDEGVQEITLLGQNVNSYGVQF--GDRGAFA 228

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
            LL +   I GL R+R+T+ HP   +D +I+A  +   +MP LH+P+QSGSD +L+ M R
Sbjct: 229 KLLRACGNIDGLERVRFTSPHPAAFTDDVIEAMAETPNVMPSLHMPLQSGSDEVLRRMRR 288

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
            + + ++  I+DR+R   P  AI++D IVGFPGETD DF  TM +V++  ++ AF+F+YS
Sbjct: 289 SYRSTKFLGILDRVREAIPHAAITTDIIVGFPGETDKDFAETMRIVEESRFSAAFTFQYS 348

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKG- 426
            R  TP   M +QV + V  ER   L + + +     N A +G+ +EV+  +  G++   
Sbjct: 349 IRPNTPAGVMEDQVPKPVVQERYEQLVELVDDIAWQENKAQIGRAVEVMFAQGEGRKDEA 408

Query: 427 --KLVGRSPWLQSVVL---NSKN-HNIGDIIKVRITDVKISTLYGE 466
             ++ GR+   + V +      +    GDI +V IT      L  +
Sbjct: 409 THRVTGRARDNRLVHVSLNPGDDVPRPGDIGEVVITSGHPHHLVAD 454


>gi|163814151|ref|ZP_02205543.1| hypothetical protein COPEUT_00305 [Coprococcus eutactus ATCC 27759]
 gi|158450600|gb|EDP27595.1| hypothetical protein COPEUT_00305 [Coprococcus eutactus ATCC 27759]
          Length = 437

 Score =  405 bits (1040), Expect = e-110,   Method: Composition-based stats.
 Identities = 129/449 (28%), Positives = 219/449 (48%), Gaps = 20/449 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +  + S GC  N+ DS  M  +    G+E  N   +A+ +V+NTC     A E+  + + 
Sbjct: 2   KVLLISLGCDKNLVDSEVMLGLLNKAGHELTNDETEAEAVVINTCAFISDAKEESINTII 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +  LK    K G    ++VAGC++Q   +EI++  P ++V++G   Y ++ E +     
Sbjct: 62  EMGRLK----KTGRLKKLIVAGCLSQRYKDEIMKELPEIDVIIGATNYDKIVEAIG---- 113

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                D D  V+D       V           A+  I EGC+K CT+C++P+ RG   S 
Sbjct: 114 ----TDEDAIVDDINYTPKPVSERIVTTNASMAYFKIAEGCNKLCTYCIIPHIRGRYRSI 169

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            + +++  A KL  +G+ E+ L+ Q      G  L G K    +LL  LS+I+G+  +R 
Sbjct: 170 PMDRLLASAEKLAADGIKELVLVAQETT-LYGVDLYGGKK-LPELLTKLSDIEGIEWIRL 227

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
              +P +++D LI    +   +  Y+ +P+Q   + IL+ M R+ +  +   ++ ++R+ 
Sbjct: 228 LYCYPEEITDELISVMAENPKICHYIDIPIQHSENEILRRMGRKTSREDIVSLVSKLRTA 287

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            PDIAI +  I GFPGET +     +D VD+  + +   F YSP  GTP +   +QVD  
Sbjct: 288 MPDIAIRTTLISGFPGETQELHDGLVDFVDECEFDRLGVFTYSPEEGTPAAGYEDQVDGE 347

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVLN 441
           + A+    + +  +E     N   +G I  VLIE +  E    VGR+    P +  +V  
Sbjct: 348 LAAKWRDEIMELQQEISYEKNQELIGSIQRVLIEGYLVEDDVYVGRTYRDAPGVDGIVFV 407

Query: 442 SKNHNI--GDIIKVRITDVKISTLYGELV 468
           S  + +  G  + V+IT+     L G +V
Sbjct: 408 SAPYELMSGSFVDVKITEANEYDLTGVIV 436


>gi|313792158|gb|EFS40259.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes
           HL110PA1]
 gi|313801889|gb|EFS43123.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes
           HL110PA2]
 gi|313838715|gb|EFS76429.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes
           HL086PA1]
 gi|314962816|gb|EFT06916.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes
           HL082PA1]
 gi|315078033|gb|EFT50084.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes
           HL053PA2]
 gi|327453124|gb|EGE99778.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes
           HL092PA1]
          Length = 494

 Score =  405 bits (1040), Expect = e-110,   Method: Composition-based stats.
 Identities = 162/466 (34%), Positives = 258/466 (55%), Gaps = 24/466 (5%)

Query: 13  MVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYE---RVNSMDDADLIVLNT 69
           M +  +     P  + V +YGCQMNV+DS R+  +    GY    R +++  AD++V NT
Sbjct: 1   MPNNTLQHTEAP-TYRVVTYGCQMNVHDSERIAGLLEEAGYVPDPRTDTLAPADVVVFNT 59

Query: 70  CHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG 129
           C +RE A  ++Y  LG +  +K++       + + V GC+AQ + + ++ R+P V+VV G
Sbjct: 60  CAVRENADNRLYGTLGHMAAVKSAH----PGMQLAVGGCMAQKDKDTVVARAPWVDVVFG 115

Query: 130 PQTYYRLPELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
                 LP LL+RAR      V+ + S+      L        R    +A+++I  GC+ 
Sbjct: 116 THNVGSLPVLLKRARHNATAQVEIEESLVTFPSNLP-----ARRDSAYSAWVSISVGCNN 170

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS 248
            CTFC+VP  RG E  R   +++ E R L++ GV EITLLGQNVN++  +   G++  F+
Sbjct: 171 TCTFCIVPQLRGKETDRRPGEILSEIRALVNEGVQEITLLGQNVNSYGVQF--GDRGAFA 228

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
            LL +   I GL R+R+T+ HP   +D +I+A  +   +MP LH+P+QSGSD +L+ M R
Sbjct: 229 KLLRACGNIDGLERVRFTSPHPAAFTDDVIEAMAETPNVMPSLHMPLQSGSDEVLRRMRR 288

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
            + + ++  I+DR+R   P  AI++D IVGFPGETD DF  TM +V++  ++ AF+F+YS
Sbjct: 289 SYRSTKFLGILDRVREAIPHAAITTDIIVGFPGETDKDFAETMRIVEESRFSAAFTFQYS 348

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKG- 426
            R  TP   M +QV + V  ER   L + + +     N A VG+ +EV+  +  G++   
Sbjct: 349 IRPNTPAGVMKDQVPKPVVQERYEQLVELVDDIAWQENKAQVGRAVEVMFAQGEGRKDEA 408

Query: 427 --KLVGRSPWLQSVVL---NSKN-HNIGDIIKVRITDVKISTLYGE 466
             ++ GR+   + V +      +    GDI +V IT      L  +
Sbjct: 409 THRVTGRARDNRLVHVSLNPGDDVPRPGDIGEVVITSGHPHHLVAD 454


>gi|282854035|ref|ZP_06263372.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes
           J139]
 gi|282583488|gb|EFB88868.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes
           J139]
 gi|314981113|gb|EFT25207.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes
           HL110PA3]
 gi|315091939|gb|EFT63915.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes
           HL110PA4]
 gi|315093305|gb|EFT65281.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes
           HL060PA1]
 gi|315103440|gb|EFT75416.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes
           HL050PA2]
 gi|327327604|gb|EGE69380.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes
           HL103PA1]
          Length = 492

 Score =  405 bits (1040), Expect = e-110,   Method: Composition-based stats.
 Identities = 162/466 (34%), Positives = 258/466 (55%), Gaps = 24/466 (5%)

Query: 13  MVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYE---RVNSMDDADLIVLNT 69
           M +  +     P  + V +YGCQMNV+DS R+  +    GY    R +++  AD++V NT
Sbjct: 1   MPNNTLQHTEAP-TYRVVTYGCQMNVHDSERIAGLLEEAGYVPDPRTDTLAPADVVVFNT 59

Query: 70  CHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG 129
           C +RE A  ++Y  LG +  +K++       + + V GC+AQ + + ++ R+P V+VV G
Sbjct: 60  CAVRENADNRLYGTLGHMAAVKSAH----PGMQLAVGGCMAQKDKDTVVARAPWVDVVFG 115

Query: 130 PQTYYRLPELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
                 LP LL+RAR      V+ + S+      L        R    +A+++I  GC+ 
Sbjct: 116 THNVGSLPVLLKRARHNATAQVEIEESLVTFPSNLP-----ARRDSAYSAWVSISVGCNN 170

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS 248
            CTFC+VP  RG E  R   +++ E R L+D GV EITLLGQNVN++  +   G++  F+
Sbjct: 171 TCTFCIVPQLRGKETDRRPGEILSEIRALVDEGVQEITLLGQNVNSYGVQF--GDRGAFA 228

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
            LL +   I GL R+R+T+ HP   +D +I+A  +   +MP LH+P+QSGSD +L+ M R
Sbjct: 229 KLLRACGNIDGLERVRFTSPHPAAFTDDVIEAMAETPNVMPSLHMPLQSGSDEVLRRMRR 288

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
            + + ++  I+DR+R   P  AI++D IVGFPGETD DF  TM +V++  ++ AF+F+YS
Sbjct: 289 SYRSTKFLGILDRVREAIPHAAITTDIIVGFPGETDKDFAETMRIVEESRFSAAFTFQYS 348

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKG- 426
            R  TP   M +QV + V  ER   L + + +     N A +G+ +EV+  +  G++   
Sbjct: 349 IRPNTPAGVMEDQVPKPVVQERYEQLVELVDDIAWQENKAQIGRAVEVMFAQGEGRKDEA 408

Query: 427 --KLVGRSPWLQSVVL---NSKN-HNIGDIIKVRITDVKISTLYGE 466
             ++ GR+   + V +      +    GDI +V IT      L  +
Sbjct: 409 THRVTGRARDNRLVHVSLNPGDDVPRPGDIGEVVITSGHPHHLVAD 454


>gi|295130577|ref|YP_003581240.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes
           SK137]
 gi|291375467|gb|ADD99321.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes
           SK137]
          Length = 497

 Score =  405 bits (1040), Expect = e-110,   Method: Composition-based stats.
 Identities = 162/466 (34%), Positives = 258/466 (55%), Gaps = 24/466 (5%)

Query: 13  MVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYE---RVNSMDDADLIVLNT 69
           M +  +     P  + V +YGCQMNV+DS R+  +    GY    R +++  AD++V NT
Sbjct: 4   MPNNTLQHTEAP-TYRVVTYGCQMNVHDSERIAGLLEEAGYVPDPRTDTLAPADVVVFNT 62

Query: 70  CHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG 129
           C +RE A  ++Y  LG +  +K++       + + V GC+AQ + + ++ R+P V+VV G
Sbjct: 63  CAVRENADNRLYGTLGHMAAVKSAH----PGMQLAVGGCMAQKDKDTVVARAPWVDVVFG 118

Query: 130 PQTYYRLPELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
                 LP LL+RAR      V+ + S+      L        R    +A+++I  GC+ 
Sbjct: 119 THNVGSLPVLLKRARHNATAQVEIEESLVTFPSNLP-----ARRDSAYSAWVSISVGCNN 173

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS 248
            CTFC+VP  RG E  R   +++ E R L++ GV EITLLGQNVN++  +   G++  F+
Sbjct: 174 TCTFCIVPQLRGKETDRRPGEILSEIRALVNEGVQEITLLGQNVNSYGVQF--GDRGAFA 231

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
            LL +   I GL R+R+T+ HP   +D +I+A  +   +MP LH+P+QSGSD +L+ M R
Sbjct: 232 KLLRACGNIDGLERVRFTSPHPAAFTDDVIEAMAETPNVMPSLHMPLQSGSDEVLRRMRR 291

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
            + + ++  I+DR+R   P  AI++D IVGFPGETD DF  TM +V++  ++ AF+F+YS
Sbjct: 292 SYRSTKFLGILDRVREAIPHAAITTDIIVGFPGETDKDFAETMRIVEESRFSAAFTFQYS 351

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKG- 426
            R  TP   M +QV + V  ER   L + + +     N A VG+ +EV+  +  G++   
Sbjct: 352 IRPNTPAGVMKDQVPKPVVQERYEQLVELVDDIAWQENKAQVGRAVEVMFAQGEGRKDEA 411

Query: 427 --KLVGRSPWLQSVVL---NSKN-HNIGDIIKVRITDVKISTLYGE 466
             ++ GR+   + V +      +    GDI +V IT      L  +
Sbjct: 412 THRVTGRARDNRLVHVSLNPGDDVPRPGDIGEVVITSGHPHHLVAD 457


>gi|289427275|ref|ZP_06428991.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes
           J165]
 gi|289159744|gb|EFD07932.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes
           J165]
          Length = 497

 Score =  405 bits (1040), Expect = e-110,   Method: Composition-based stats.
 Identities = 162/466 (34%), Positives = 258/466 (55%), Gaps = 24/466 (5%)

Query: 13  MVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYE---RVNSMDDADLIVLNT 69
           M +  +     P  + V +YGCQMNV+DS R+  +    GY    R +++  AD++V NT
Sbjct: 4   MPNNTLQHTEAP-TYRVVTYGCQMNVHDSERIAGLLEEAGYVPDPRTDTLAPADVVVFNT 62

Query: 70  CHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG 129
           C +RE A  ++Y  LG +  +K++       + + V GC+AQ + + ++ R+P V+VV G
Sbjct: 63  CAVRENADNRLYGTLGHMAAVKSAH----PGMQLAVGGCMAQKDKDTVVARAPWVDVVFG 118

Query: 130 PQTYYRLPELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
                 LP LL+RAR      V+ + S+      L        R    +A+++I  GC+ 
Sbjct: 119 THNVGSLPVLLKRARHNATAQVEIEESLVTFPSNLP-----ARRDSAYSAWVSISVGCNN 173

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS 248
            CTFC+VP  RG E  R   +++ E R L++ GV EITLLGQNVN++  +   G++  F+
Sbjct: 174 TCTFCIVPQLRGKETDRRPGEILSEIRALVNEGVQEITLLGQNVNSYGVQF--GDRGAFA 231

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
            LL +   I GL R+R+T+ HP   +D +I+A  +   +MP LH+P+QSGSD +L+ M R
Sbjct: 232 KLLRACGNIDGLERVRFTSPHPAAFTDDVIEAMAETPNVMPSLHMPLQSGSDEVLRRMRR 291

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
            + + ++  I+DR+R   P  AI++D IVGFPGETD DF  TM +V++  ++ AF+F+YS
Sbjct: 292 SYRSTKFLGILDRVREAIPHAAITTDIIVGFPGETDKDFAETMRIVEESRFSAAFTFQYS 351

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKG- 426
            R  TP   M +QV + V  ER   L + + +     N A VG+ +EV+  +  G++   
Sbjct: 352 IRPNTPAGVMKDQVPKPVVQERYEQLVELVDDIAWQENKAQVGRAVEVMFAQGEGRKDEA 411

Query: 427 --KLVGRSPWLQSVVL---NSKN-HNIGDIIKVRITDVKISTLYGE 466
             ++ GR+   + V +      +    GDI +V IT      L  +
Sbjct: 412 THRVTGRARDNRLVHVSLNPGDDVPRPGDIGEVVITSGHPHHLVAD 457


>gi|30022389|ref|NP_834020.1| Fe-S oxidoreductase [Bacillus cereus ATCC 14579]
 gi|218232497|ref|YP_002369119.1| hypothetical protein BCB4264_A4429 [Bacillus cereus B4264]
 gi|218899478|ref|YP_002447889.1| RNA modification enzyme, MiaB family [Bacillus cereus G9842]
 gi|228902835|ref|ZP_04066979.1| hypothetical protein bthur0014_40060 [Bacillus thuringiensis IBL
           4222]
 gi|228954596|ref|ZP_04116620.1| hypothetical protein bthur0006_39650 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|229071815|ref|ZP_04205029.1| hypothetical protein bcere0025_39840 [Bacillus cereus F65185]
 gi|229081572|ref|ZP_04214069.1| hypothetical protein bcere0023_42040 [Bacillus cereus Rock4-2]
 gi|229129590|ref|ZP_04258559.1| hypothetical protein bcere0015_40320 [Bacillus cereus BDRD-Cer4]
 gi|229152512|ref|ZP_04280703.1| hypothetical protein bcere0011_40490 [Bacillus cereus m1550]
 gi|29897947|gb|AAP11221.1| Fe-S oxidoreductase [Bacillus cereus ATCC 14579]
 gi|218160454|gb|ACK60446.1| conserved hypothetical protein [Bacillus cereus B4264]
 gi|218544457|gb|ACK96851.1| RNA modification enzyme, MiaB family [Bacillus cereus G9842]
 gi|228630943|gb|EEK87581.1| hypothetical protein bcere0011_40490 [Bacillus cereus m1550]
 gi|228653858|gb|EEL09727.1| hypothetical protein bcere0015_40320 [Bacillus cereus BDRD-Cer4]
 gi|228701728|gb|EEL54217.1| hypothetical protein bcere0023_42040 [Bacillus cereus Rock4-2]
 gi|228711294|gb|EEL63255.1| hypothetical protein bcere0025_39840 [Bacillus cereus F65185]
 gi|228805042|gb|EEM51637.1| hypothetical protein bthur0006_39650 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228856791|gb|EEN01307.1| hypothetical protein bthur0014_40060 [Bacillus thuringiensis IBL
           4222]
          Length = 450

 Score =  405 bits (1040), Expect = e-110,   Method: Composition-based stats.
 Identities = 136/449 (30%), Positives = 237/449 (52%), Gaps = 21/449 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
                + GC++N Y++  +  +F   GYER      AD+ V+NTC +     +K    + 
Sbjct: 3   TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKADVYVINTCTVTNTGDKKSRQVIR 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R        +++  D ++ V GC AQ    EI+   P V++VVG Q   ++   +E  R 
Sbjct: 63  RA-------VRQNPDAVICVTGCYAQTSPAEIMA-IPGVDIVVGTQDREKMLGYIEEFRK 114

Query: 146 GKRVVDTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            ++ ++   ++     +E L +            A L IQEGC+ FCTFC++P+ RG+  
Sbjct: 115 ERQPINAVRNIMKTRVYEELDVP----YFTDRTRASLKIQEGCNNFCTFCIIPWARGLMR 170

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKGLVR 262
           SR   +V+ +A++L+D G  EI L G +     G G D +    + LL  + +E+ GL R
Sbjct: 171 SRDGKEVIKQAQQLVDAGYKEIVLTGIHTG---GYGEDIKDYNLAGLLRDMEAEVGGLKR 227

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LR ++     +SD +I+     +V++ +LH+P+QSGS+ +LK M R++T   +++ +DR+
Sbjct: 228 LRISSIEASQISDEVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRL 287

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           +   P +AI+SD IVGFPGET+++F  T + + +  +++   F YS R GTP + M +QV
Sbjct: 288 KEALPGLAITSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQV 347

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK---HGKEKGKLVGRSPWLQSVV 439
            E+VK +R+  L +   +    +  A  G+++E++ E+    G  +G  VG +     +V
Sbjct: 348 PEDVKNDRVHRLIELSNQLAKEYASAFEGEVLEIIPEEQFKDGDREGLYVGYTDNYLKIV 407

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG ++KV+IT         + V
Sbjct: 408 FEGSEELIGKLVKVKITKAGYPYNEAQFV 436


>gi|224369269|ref|YP_002603433.1| MiaB [Desulfobacterium autotrophicum HRM2]
 gi|223691986|gb|ACN15269.1| MiaB [Desulfobacterium autotrophicum HRM2]
          Length = 460

 Score =  405 bits (1040), Expect = e-110,   Method: Composition-based stats.
 Identities = 179/454 (39%), Positives = 260/454 (57%), Gaps = 21/454 (4%)

Query: 24  PQRF-FVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           P+ + ++ + GCQMN YD+ R+  +    GY + N +  AD+IV NTC IREKA EK +S
Sbjct: 12  PKGYAYIYTIGCQMNTYDTERLFFILGGLGYVKTNDLHRADIIVCNTCSIREKAQEKAFS 71

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
           FLGR+  LK    K    L+ ++ GCVAQ E EE+ +R+  +++V+G Q + RL   +  
Sbjct: 72  FLGRVPPLK----KAKPHLITIMTGCVAQQEAEEVFKRNACIDIVLGTQAFSRLGGHIMN 127

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
              G+  +         +E +   D  +     V+ F+TI +GCD FCT+CVVPY RG E
Sbjct: 128 VLNGRGQITDVEDSPAIYEAMP--DFSFIDNDKVSRFVTIMQGCDNFCTYCVVPYVRGRE 185

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR+   +V+E   L D GV E+TLLGQNVN++   G   + C+FSDLL  +S + G+ R
Sbjct: 186 RSRTPESIVEEISILADAGVKEVTLLGQNVNSY---GQKEQICSFSDLLEQISRVSGIER 242

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+ TSHP+D+SD LI A  D+D +   LHLPVQSGS+RILK MNR +T  +Y + + ++
Sbjct: 243 IRFATSHPKDLSDDLIYAIRDIDKVCNQLHLPVQSGSNRILKKMNRGYTKEQYLERVGKL 302

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R   P IA+SSD I+GFP ET  DF  TMDLV ++ +   F+F YS R   P S   + V
Sbjct: 303 RKNCPSIALSSDMIIGFPSETRADFDETMDLVRRVEFDGIFAFAYSDRPQAPASKFSDGV 362

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-----------GKLVGR 431
           ++  K ERL  L +   E     N A VG   +VL+E   ++K            ++ GR
Sbjct: 363 EDAEKMERLNELIQFQDEMTHQKNQALVGAWEQVLVEGLSQKKRHDEGENPSDFPQMTGR 422

Query: 432 SPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYG 465
           +   + V     N   G+I+ V+I      +L+ 
Sbjct: 423 TESGKIVHFYGNNVCPGEILDVKIKYAYPHSLWA 456


>gi|258405711|ref|YP_003198453.1| (dimethylallyl)adenosine tRNA methylthiotransferase
           [Desulfohalobium retbaense DSM 5692]
 gi|257797938|gb|ACV68875.1| RNA modification enzyme, MiaB family [Desulfohalobium retbaense DSM
           5692]
          Length = 445

 Score =  404 bits (1039), Expect = e-110,   Method: Composition-based stats.
 Identities = 170/447 (38%), Positives = 258/447 (57%), Gaps = 13/447 (2%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           RF + ++GCQMNV DS  +       G E     + A++ V+NTC +REK  +KVYS LG
Sbjct: 2   RFHIITHGCQMNVCDSDWLHRALVDLGGEPA-DEESAEVFVVNTCSVREKPEQKVYSLLG 60

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R+        +   ++ V V GCVAQ  G    +R P V +V G      +P+ ++R R 
Sbjct: 61  RL----QGYWQRNPNVFVAVGGCVAQQVGTRFWKRFPHVRLVFGTDGIAMVPQAVDRLRS 116

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
             ++  +    E+ +            +    AF+ I +GCD +C +C+VPYTRG + SR
Sbjct: 117 DPQLRLSLLDFEEHYPERE--QLWPEAEVPAQAFVNIMQGCDNYCAYCIVPYTRGRQKSR 174

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           S + V+ E R+L   G  EITLLGQNVN+  G+  +G+  +F+ LL  +  I G+ ++R+
Sbjct: 175 SSAAVLQECRELARRGAREITLLGQNVNS-YGQDANGDGTSFAALLEQVCAIPGIEQVRF 233

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
           TTSHP+D++  +I A G L  L P+LHLP+QSGSDRILK+M RR+T   Y  I+  +R  
Sbjct: 234 TTSHPKDIAPEVIAAFGRLPELSPHLHLPLQSGSDRILKAMRRRYTRQRYLDIVTGLRQA 293

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
           RP+I +++D IVGFPGET+ DF  T++++ ++G+A +FSFKYS R G     M ++V E 
Sbjct: 294 RPEITLTTDLIVGFPGETEADFEQTLEMMREVGFASSFSFKYSDRPGVAAEQMEDKVPEE 353

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK---LVGRSPWLQSVVLNS 442
           +K+ RL  LQ    E       A VG+ + VL+ + G++ G      GR P  + V   +
Sbjct: 354 IKSHRLQRLQSLQEELTGEALQAEVGRHVTVLLREPGRQDGGGVIWRGRDPGGRVVNCRT 413

Query: 443 --KNHNIGDIIKVRITDVKISTLYGEL 467
              +  IG  + VR+T+ K  +L+GE+
Sbjct: 414 ELDSALIGSYVGVRVTEAKKHSLFGEV 440


>gi|118594514|ref|ZP_01551861.1| tRNA-i(6)A37 modification enzyme MiaB [Methylophilales bacterium
           HTCC2181]
 gi|118440292|gb|EAV46919.1| tRNA-i(6)A37 modification enzyme MiaB [Methylophilales bacterium
           HTCC2181]
          Length = 441

 Score =  404 bits (1039), Expect = e-110,   Method: Composition-based stats.
 Identities = 181/449 (40%), Positives = 274/449 (61%), Gaps = 12/449 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++ F+K++GCQMN YDS ++ D+   S       S D AD+I+LNTC IRE+A  KVY
Sbjct: 1   MTKQLFIKTFGCQMNEYDSEKIVDVLKESSKISLTESPDHADIIILNTCSIRERAEVKVY 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S LGR R LK +      ++ + V GCVA  EGE I++R+P V++V GPQT +RLP LL+
Sbjct: 61  SDLGRYRKLKEN----NPNIRIAVGGCVASQEGENIIKRAPYVDLVFGPQTLHRLPSLLK 116

Query: 142 -RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
            R   G   +D  +   +KF+ L I        +G +A ++I EGC K+C+FCVVPYTRG
Sbjct: 117 KRELLGTPQIDITFPEIEKFDSLPITQF-----KGPSASVSIMEGCSKYCSFCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            EISR L  ++DE  +L   GV EITLLGQNVNA+RG+      C F+ LL  ++EI  +
Sbjct: 172 EEISRPLDDILDEIIELTMIGVQEITLLGQNVNAYRGQSQHNGVCDFATLLEYVAEINEV 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+TTSHP +M++ LI   G ++ L    HLP+QSGSDR+L +M R +T  EY+ II 
Sbjct: 232 KRIRFTTSHPNEMTEELIACFGKINKLSKQFHLPIQSGSDRVLSAMKRNYTVLEYKSIIK 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           +++ V P+I+++SDFI+GFP ETD++F  T  +++++ +  +FSF YSPR GTP S + +
Sbjct: 292 KLKKVCPEISLTSDFIIGFPNETDEEFNQTKKIMEEVNFDYSFSFLYSPRPGTPASFIKD 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439
            + +  K  RL   Q     Q        +G    +LI++  K K G  +G++   + + 
Sbjct: 352 NISKEKKESRLREFQDMNIIQGKKHTLNMIGTKQRILIDRESKRKAGIFLGKTDNNRVIE 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
           ++  +  +   + V+I  +    L G ++
Sbjct: 412 VDGSSEILNKFVNVKIKAISEKNLEGIII 440


>gi|47567875|ref|ZP_00238583.1| MiaB-like tRNA modifying enzyme [Bacillus cereus G9241]
 gi|49478605|ref|YP_038365.1| hypothetical protein BT9727_4047 [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|52141194|ref|YP_085636.1| hypothetical protein BCZK4057 [Bacillus cereus E33L]
 gi|167634590|ref|ZP_02392910.1| conserved hypothetical protein [Bacillus anthracis str. A0442]
 gi|170687423|ref|ZP_02878640.1| conserved hypothetical protein [Bacillus anthracis str. A0465]
 gi|196034518|ref|ZP_03101927.1| RNA modification enzyme, MiaB family [Bacillus cereus W]
 gi|196039288|ref|ZP_03106594.1| RNA modification enzyme, MiaB family [Bacillus cereus NVH0597-99]
 gi|225866291|ref|YP_002751669.1| RNA modification enzyme, MiaB family [Bacillus cereus 03BB102]
 gi|228929354|ref|ZP_04092378.1| hypothetical protein bthur0010_40400 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228935630|ref|ZP_04098444.1| hypothetical protein bthur0009_40760 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228948023|ref|ZP_04110308.1| hypothetical protein bthur0007_41500 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228987561|ref|ZP_04147679.1| hypothetical protein bthur0001_42320 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|229031959|ref|ZP_04187945.1| hypothetical protein bcere0028_40050 [Bacillus cereus AH1271]
 gi|229123849|ref|ZP_04253042.1| hypothetical protein bcere0016_41350 [Bacillus cereus 95/8201]
 gi|229157924|ref|ZP_04285997.1| hypothetical protein bcere0010_41050 [Bacillus cereus ATCC 4342]
 gi|254684067|ref|ZP_05147927.1| RNA modification enzyme, MiaB family protein [Bacillus anthracis
           str. CNEVA-9066]
 gi|254721901|ref|ZP_05183690.1| RNA modification enzyme, MiaB family protein [Bacillus anthracis
           str. A1055]
 gi|254741453|ref|ZP_05199140.1| RNA modification enzyme, MiaB family protein [Bacillus anthracis
           str. Kruger B]
 gi|300118700|ref|ZP_07056428.1| RNA modification enzyme, MiaB family protein [Bacillus cereus SJ1]
 gi|47555552|gb|EAL13895.1| MiaB-like tRNA modifying enzyme [Bacillus cereus G9241]
 gi|49330161|gb|AAT60807.1| conserved hypothetical protein [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|51974663|gb|AAU16213.1| conserved hypothetical protein [Bacillus cereus E33L]
 gi|167530042|gb|EDR92777.1| conserved hypothetical protein [Bacillus anthracis str. A0442]
 gi|170668618|gb|EDT19364.1| conserved hypothetical protein [Bacillus anthracis str. A0465]
 gi|195993060|gb|EDX57019.1| RNA modification enzyme, MiaB family [Bacillus cereus W]
 gi|196029915|gb|EDX68516.1| RNA modification enzyme, MiaB family [Bacillus cereus NVH0597-99]
 gi|225790885|gb|ACO31102.1| RNA modification enzyme, MiaB family [Bacillus cereus 03BB102]
 gi|228625532|gb|EEK82286.1| hypothetical protein bcere0010_41050 [Bacillus cereus ATCC 4342]
 gi|228659563|gb|EEL15210.1| hypothetical protein bcere0016_41350 [Bacillus cereus 95/8201]
 gi|228729349|gb|EEL80340.1| hypothetical protein bcere0028_40050 [Bacillus cereus AH1271]
 gi|228772159|gb|EEM20607.1| hypothetical protein bthur0001_42320 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|228811609|gb|EEM57945.1| hypothetical protein bthur0007_41500 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228823990|gb|EEM69808.1| hypothetical protein bthur0009_40760 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228830305|gb|EEM75918.1| hypothetical protein bthur0010_40400 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|298723949|gb|EFI64663.1| RNA modification enzyme, MiaB family protein [Bacillus cereus SJ1]
          Length = 450

 Score =  404 bits (1039), Expect = e-110,   Method: Composition-based stats.
 Identities = 135/449 (30%), Positives = 236/449 (52%), Gaps = 21/449 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
                + GC++N Y++  +  +F   GYER      AD+ V+NTC +     +K    + 
Sbjct: 3   TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKADVYVINTCTVTNTGDKKSRQVIR 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R        +++  D ++ V GC AQ    EI+   P V++VVG Q   ++   +E  R 
Sbjct: 63  RA-------VRQNPDAVICVTGCYAQTSPAEIMA-IPGVDIVVGTQDREKMLGYIEEFRK 114

Query: 146 GKRVVDTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            ++ ++   ++     +E L +            A L IQEGC+ FCTFC++P+ RG+  
Sbjct: 115 ERQPINAVRNIMKTRVYEELDVP----YFTDRTRASLKIQEGCNNFCTFCIIPWARGLMR 170

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKGLVR 262
           SR   +V+ +A++L+D G  EI L G +     G G D +    + LL  + +E+ GL R
Sbjct: 171 SRDGKEVIKQAQQLVDAGYKEIVLTGIHTG---GYGEDIKDYNLAGLLRDMEAEVGGLKR 227

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LR ++     +SD +I+     +V++ +LH+P+QSGS+ +LK M R++T   +++ +DR+
Sbjct: 228 LRISSIEASQISDEVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRL 287

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           +   P +AI+SD IVGFPGET+++F  T + + +  +++   F YS R GTP + M +QV
Sbjct: 288 KEALPGLAITSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQV 347

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK---HGKEKGKLVGRSPWLQSVV 439
            E+VK +R+  L +   +    +     G+++E++ E+    G  +G  VG +     +V
Sbjct: 348 PEDVKNDRVHRLIELSNQLAKEYASQFEGEVLEIIPEEQFKEGDREGLYVGYTDNYLKIV 407

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG ++KV+IT         + V
Sbjct: 408 FEGSEELIGKLVKVKITKAGYPYNEAQFV 436


>gi|255655337|ref|ZP_05400746.1| radical SAM-superfamily protein [Clostridium difficile QCD-23m63]
 gi|296451323|ref|ZP_06893063.1| MiaB family RNA modification enzyme [Clostridium difficile NAP08]
 gi|296880325|ref|ZP_06904288.1| MiaB family RNA modification enzyme [Clostridium difficile NAP07]
 gi|296259929|gb|EFH06784.1| MiaB family RNA modification enzyme [Clostridium difficile NAP08]
 gi|296428566|gb|EFH14450.1| MiaB family RNA modification enzyme [Clostridium difficile NAP07]
          Length = 444

 Score =  404 bits (1039), Expect = e-110,   Method: Composition-based stats.
 Identities = 136/448 (30%), Positives = 229/448 (51%), Gaps = 15/448 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +  ++S GC  N+ D+  M  +  ++GY+ +   ++AD+I++NTC   E A ++    + 
Sbjct: 3   KIALESLGCSKNLVDAEIMMGILNNKGYKLIGDFEEADVIIVNTCGFIESAKQESIDTII 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
               LK    K G   L++V GC+AQ   EE+    P ++ +VG  +Y  + ++L     
Sbjct: 63  NFAELK----KTGNLKLLIVTGCLAQRYSEELKTEIPEIDAIVGTGSYQNIDKILRELSE 118

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
             ++V  +       E L      Y       A+L I EGC   CT+C++P  RG   SR
Sbjct: 119 MHQIVSLNDIEFVFNEDLP----RYLSTPSYMAYLKIGEGCSNNCTYCIIPKLRGKYRSR 174

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
               ++ EA+KL ++GV E+ ++ Q+     G  L G K   S+LL  L++I G   +R 
Sbjct: 175 KFEDIIKEAKKLAESGVKELVVIAQDTT-KYGFDLYG-KERLSELLEELAKIDGFKWIRV 232

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
             S+P  +++ LI+     D +  Y  +P+Q  S+ ILK MNR+ T  +    I+ IRS 
Sbjct: 233 MYSYPESITEELIQVIKKYDNICSYFDMPIQHASNNILKLMNRKTTKEDILNKINLIRSN 292

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            PD  + +  IVGFPGET+DDF+  +D V+++ + +  +F YS    TP   +   +DE+
Sbjct: 293 IPDAILRTTIIVGFPGETEDDFKQLVDFVEEVKFDRLGAFAYSREEDTPADRLPNHIDED 352

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK---GKLVGRSPWLQSVVLNS 442
           VK +R   L    ++     ND  +G+  EVLIE+  ++    G+  G +  + S+V   
Sbjct: 353 VKIQRRDTLMMIQQKISEELNDKKIGKTYEVLIEEQIEDNVYTGRTQGDAEEIDSIVYVK 412

Query: 443 --KNHNIGDIIKVRITDVKISTLYGELV 468
              N  IG+ + V+I D     L G+++
Sbjct: 413 SVDNLEIGEFVSVKINDAMEYDLMGDVL 440


>gi|289425065|ref|ZP_06426842.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes
           SK187]
 gi|289154043|gb|EFD02731.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes
           SK187]
          Length = 497

 Score =  404 bits (1039), Expect = e-110,   Method: Composition-based stats.
 Identities = 162/466 (34%), Positives = 258/466 (55%), Gaps = 24/466 (5%)

Query: 13  MVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYE---RVNSMDDADLIVLNT 69
           M +  +     P  + V +YGCQMNV+DS R+  +    GY    R +++  AD++V NT
Sbjct: 4   MPNNTLQHTEAP-TYRVVTYGCQMNVHDSERIAGLLEEAGYVPDPRTDTLAPADVVVFNT 62

Query: 70  CHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG 129
           C +RE A  ++Y  LG +  +K++       + + V GC+AQ + + ++ R+P V+VV G
Sbjct: 63  CAVRENADNRLYGTLGHMAAVKSAH----PGMQLAVGGCMAQKDKDTVVARAPWVDVVFG 118

Query: 130 PQTYYRLPELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
                 LP LL+RAR      V+ + S+      L        R    +A+++I  GC+ 
Sbjct: 119 THNVGSLPVLLKRARHNATAQVEIEESLVTFPSNLP-----ARRDSAYSAWVSISVGCNN 173

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS 248
            CTFC+VP  RG E  R   +++ E R L++ GV EITLLGQNVN++  +   G++  F+
Sbjct: 174 TCTFCIVPQLRGKETDRRPGEILSEIRALVNEGVQEITLLGQNVNSYGVQF--GDRGAFA 231

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
            LL +   I GL R+R+T+ HP   +D +I+A  +   +MP LH+P+QSGSD +L+ M R
Sbjct: 232 KLLRACGNIDGLERVRFTSPHPAAFTDDVIEAMAETPNVMPSLHMPLQSGSDEVLRRMRR 291

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
            + + ++  I+DR+R   P  AI++D IVGFPGETD DF  TM +V++  ++ AF+F+YS
Sbjct: 292 SYRSTKFLGILDRVREAIPHAAITTDIIVGFPGETDKDFAETMRIVEESRFSAAFTFQYS 351

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKG- 426
            R  TP   M +QV + V  ER   L + + +     N A VG+ +EV+  +  G++   
Sbjct: 352 IRPNTPAGVMKDQVPKPVVQERYEQLVELVDDIAWQENKAQVGRAVEVMFAQGEGRKDEA 411

Query: 427 --KLVGRSPWLQSVVL---NSKN-HNIGDIIKVRITDVKISTLYGE 466
             ++ GR+   + V +      +    GDI +V IT      L  +
Sbjct: 412 THRVTGRARDNRLVHVSLNPGDDVPRPGDIGEVVITSGHPHHLVAD 457


>gi|218133712|ref|ZP_03462516.1| hypothetical protein BACPEC_01581 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991087|gb|EEC57093.1| hypothetical protein BACPEC_01581 [Bacteroides pectinophilus ATCC
           43243]
          Length = 447

 Score =  404 bits (1039), Expect = e-110,   Method: Composition-based stats.
 Identities = 137/448 (30%), Positives = 218/448 (48%), Gaps = 14/448 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC  N+ D+  M     S+GYE  +  ++AD +V+NTC     A ++    L 
Sbjct: 2   KIMFVSLGCDKNLVDTEMMLGQLHSRGYEFTDDENEADAVVVNTCCFIHDAKQESVDTLL 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +  LK    K G    ++  GC+AQ   +EI+   P V+ VVG   Y ++ + L+    
Sbjct: 62  EMAELK----KNGRCRFLIACGCLAQRYRQEIIDEIPEVDAVVGTSAYDKIADTLDELV- 116

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
             +  D     ED        D       G   +L I EGCDK CT+C++P  RG   S 
Sbjct: 117 -NKQGDGINCFEDINRLPQTHDRRIVTTGGYYEYLKIAEGCDKCCTYCIIPKVRGSYRSV 175

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            + +++ +A  L + GV E+ L+ Q   +  G  L GEK +   LL+ L+ I G+  +R 
Sbjct: 176 PMDELIKQAEDLAEQGVKELILVAQET-SLYGTDLYGEK-SLHRLLHELAAIDGIEWIRI 233

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
              +P ++ D LI+A      +  YL LP+Q  +D ILK M RR T  +   I+ ++RS 
Sbjct: 234 LYCYPEEIDDTLIQAIKSEPKVCHYLDLPIQHANDAILKRMGRRTTKQDLIDIVKKLRSE 293

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            PDI + +  I GFPGET +     +D +D++ + +  +F YS    TP +    Q+DE+
Sbjct: 294 IPDICLRTTLITGFPGETKEQHEEVLDFIDELEFDRLGAFTYSAEEDTPAAGFDNQIDED 353

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVLN 441
           VKA R   + +  +E     +   VG+ ++V+IE    ++   VGR+    P +   V  
Sbjct: 354 VKAARRDAVMELQQEISADRSAEVVGRTLKVMIEGKLADEDVYVGRTYRDAPNVDGYVFV 413

Query: 442 SKNHNI--GDIIKVRITDVKISTLYGEL 467
           + +  +  GD I V+IT      L GE 
Sbjct: 414 NTDAQLMSGDFIPVKITASDNYDLIGEP 441


>gi|218905447|ref|YP_002453281.1| RNA modification enzyme, MiaB family [Bacillus cereus AH820]
 gi|218535522|gb|ACK87920.1| RNA modification enzyme, MiaB family [Bacillus cereus AH820]
          Length = 450

 Score =  404 bits (1039), Expect = e-110,   Method: Composition-based stats.
 Identities = 135/449 (30%), Positives = 236/449 (52%), Gaps = 21/449 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
                + GC++N Y++  +  +F   GYER      AD+ V+NTC +     +K    + 
Sbjct: 3   TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKADVYVINTCTVTNTGDKKSRQVIR 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R        +++  D ++ V GC AQ    EI+   P V++VVG Q   ++   +E  R 
Sbjct: 63  RA-------VRQNPDAVICVTGCYAQTSPAEIMA-IPGVDIVVGTQDREKMLGYIEEFRX 114

Query: 146 GKRVVDTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            ++ ++   ++     +E L +            A L IQEGC+ FCTFC++P+ RG+  
Sbjct: 115 ERQPINAVRNIMKTRVYEELDVP----YFTDRTRASLKIQEGCNNFCTFCIIPWARGLMR 170

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKGLVR 262
           SR   +V+ +A++L+D G  EI L G +     G G D +    + LL  + +E+ GL R
Sbjct: 171 SRDGKEVIKQAQQLVDAGYKEIVLTGIHTG---GYGEDIKDYNLAGLLRDMEAEVGGLKR 227

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LR ++     +SD +I+     +V++ +LH+P+QSGS+ +LK M R++T   +++ +DR+
Sbjct: 228 LRISSIEASQISDEVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRL 287

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           +   P +AI+SD IVGFPGET+++F  T + + +  +++   F YS R GTP + M +QV
Sbjct: 288 KEALPGLAITSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQV 347

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK---HGKEKGKLVGRSPWLQSVV 439
            E+VK +R+  L +   +    +     G+++E++ E+    G  +G  VG +     +V
Sbjct: 348 PEDVKNDRVHRLIELSNQLAKEYASQFEGEVLEIIPEEQFKEGDREGLYVGYTDNYLKIV 407

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG ++KV+IT         + V
Sbjct: 408 FEGSEELIGKLVKVKITKAGYPYNEAQFV 436


>gi|320166116|gb|EFW43015.1| HSPC167 [Capsaspora owczarzaki ATCC 30864]
          Length = 712

 Score =  404 bits (1039), Expect = e-110,   Method: Composition-based stats.
 Identities = 159/522 (30%), Positives = 256/522 (49%), Gaps = 81/522 (15%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F ++YGCQMNV D+  +  +    G+ER   +  AD+I+L TC IR+ A  KV+S L
Sbjct: 163 RKVFFETYGCQMNVNDTEIVWSILQGVGFERTLDVKQADVILLMTCAIRDNAERKVWSRL 222

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             +++++  R K+     V V GC+A+    ++L +  +V+VV GP +Y  LP LL  A 
Sbjct: 223 NELKHMRLKRTKDQPISRVGVLGCMAERLKTQLLEKDQLVDVVAGPDSYRDLPRLLSIAN 282

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G + V+   S+++ +  ++ V      K  VTAF++I  GCD  C+FC+VP+TRG E S
Sbjct: 283 QGDQAVNVQLSLDETYADIAPVRMS---KDSVTAFVSIMRGCDNMCSFCIVPFTRGRERS 339

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK----------GLDGEKCT-------- 246
           R L+ +V+E R+L   GV E+TLLGQNVN++R +          G  G            
Sbjct: 340 RPLASIVEEVRQLARQGVREVTLLGQNVNSYRDESEPAHDAAEQGQPGNPADSPNLSAAS 399

Query: 247 -----------------------------------FSDLLYSLSEIKGLVRLRYTTSHPR 271
                                              F++LL  ++ +   +R+R+T+ HP+
Sbjct: 400 PPPLPPSAAADTTHNVTALAAGFKSIYKPKIGGRRFAELLRQVAAVDPEMRIRFTSPHPK 459

Query: 272 DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAI 331
           D  D ++        +   LH+P QSGS  +L+ M R ++   Y +++ R+R + PD+ +
Sbjct: 460 DFPDDVLTVIASTANVCKSLHMPAQSGSTSVLERMRRGYSRESYLELVARVRRLIPDVTL 519

Query: 332 SSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQVDENVKAER 390
           SSDFI GF GET+ DF+ T+DL++K GY   + F YS R  T     +++ V  +VK +R
Sbjct: 520 SSDFIAGFCGETEADFKDTLDLIEKAGYEYGYLFGYSMREKTHAHRKLVDDVPADVKNQR 579

Query: 391 LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRSPWLQSVVLNS------- 442
           L  +      +        VG    VL+E+  +  K +L GRS    SV + +       
Sbjct: 580 LKEMIASFYARSEQSLSRFVGSRQLVLVERPSRRAKDQLTGRSDGNISVNIGADLLPQGV 639

Query: 443 ----------------KNHNIGDIIKVRITDVKISTLYGELV 468
                                G+ ++V IT V   +L G  +
Sbjct: 640 VERASDEILAARRRLLDATKPGEYLEVEITSVTARSLRGVPI 681


>gi|229051301|ref|ZP_04194819.1| hypothetical protein bcere0027_52370 [Bacillus cereus AH676]
 gi|229111783|ref|ZP_04241330.1| hypothetical protein bcere0018_40280 [Bacillus cereus Rock1-15]
 gi|229148157|ref|ZP_04276463.1| hypothetical protein bcere0012_52520 [Bacillus cereus BDRD-ST24]
 gi|228635297|gb|EEK91821.1| hypothetical protein bcere0012_52520 [Bacillus cereus BDRD-ST24]
 gi|228671657|gb|EEL26954.1| hypothetical protein bcere0018_40280 [Bacillus cereus Rock1-15]
 gi|228722059|gb|EEL73486.1| hypothetical protein bcere0027_52370 [Bacillus cereus AH676]
          Length = 450

 Score =  404 bits (1039), Expect = e-110,   Method: Composition-based stats.
 Identities = 137/449 (30%), Positives = 238/449 (53%), Gaps = 21/449 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
                + GC++N Y++  +  +F   GYER      AD+ V+NTC +     +K    + 
Sbjct: 3   TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKADVYVINTCTVTNTGDKKSRQVIR 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R        +++  D ++ V GC AQ    EI+   P V++VVG Q   ++   +E  R 
Sbjct: 63  RA-------VRQNPDAVICVTGCYAQTSPAEIMA-IPGVDIVVGTQDREKMLGYIEEFRK 114

Query: 146 GKRVVDTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            ++ ++   ++     +E L +            A L IQEGC+ FCTFC++P+ RG+  
Sbjct: 115 ERQPINAVRNIMKTRVYEELDVP----YFTDRTRASLKIQEGCNNFCTFCIIPWARGLMR 170

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKGLVR 262
           SR   +V+ +A++L+D G  EI L G +     G G D +    + LL  + +E+ GL R
Sbjct: 171 SRDGKEVIKQAQQLVDAGYKEIVLTGIHTG---GYGEDIKDYNLAGLLRDMEAEVGGLKR 227

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LR ++     +SD +I+     +V++ +LH+P+QSGS+ +LK M R++T   +++ +DR+
Sbjct: 228 LRISSIEASQISDEVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRL 287

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           + V P +AI+SD IVGFPGET+++F  T + + +  +++   F YS R GTP + M +QV
Sbjct: 288 KEVLPGLAITSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQV 347

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK---HGKEKGKLVGRSPWLQSVV 439
            E+VK +R+  L +   +    +  A  G+++E++ E+    G  +G  VG +     +V
Sbjct: 348 PEDVKNDRVHRLIELSNQLAKEYASAFEGEVLEIIPEEQFKEGDREGLYVGYTDNYLKIV 407

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG ++KV+IT         + V
Sbjct: 408 FEGSEELIGKLVKVKITKAGYPYNEAQFV 436


>gi|228941477|ref|ZP_04104027.1| hypothetical protein bthur0008_41150 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228974407|ref|ZP_04134975.1| hypothetical protein bthur0003_41610 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228981002|ref|ZP_04141304.1| hypothetical protein bthur0002_41640 [Bacillus thuringiensis Bt407]
 gi|228778662|gb|EEM26927.1| hypothetical protein bthur0002_41640 [Bacillus thuringiensis Bt407]
 gi|228785243|gb|EEM33254.1| hypothetical protein bthur0003_41610 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228818127|gb|EEM64202.1| hypothetical protein bthur0008_41150 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|326942093|gb|AEA17989.1| Fe-S oxidoreductase [Bacillus thuringiensis serovar chinensis
           CT-43]
          Length = 450

 Score =  404 bits (1038), Expect = e-110,   Method: Composition-based stats.
 Identities = 136/449 (30%), Positives = 237/449 (52%), Gaps = 21/449 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
                + GC++N Y++  +  +F   GYER      AD+ V+NTC +     +K    + 
Sbjct: 3   TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKADVYVINTCTVTNTGDKKSRQVIR 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R        +++  D ++ V GC AQ    EI+   P V++VVG Q   ++   +E  R 
Sbjct: 63  RA-------VRQNPDAVICVTGCYAQTSPAEIMA-IPGVDIVVGTQDREKMLGYIEEFRK 114

Query: 146 GKRVVDTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            ++ ++   ++     +E L +            A L IQEGC+ FCTFC++P+ RG+  
Sbjct: 115 ERQPINAVRNIMKTRVYEELDVP----YFTDRTRASLKIQEGCNNFCTFCIIPWARGLMR 170

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKGLVR 262
           SR   +V+ +A++L+D G  EI L G +     G G D +    + LL  + +E+ GL R
Sbjct: 171 SRDGKEVIKQAQQLVDAGYKEIVLTGIHTG---GYGEDIKDYNLAGLLRDMEAEVGGLKR 227

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LR ++     +SD +I+     +V++ +LH+P+QSGS+ +LK M R++T   +++ +DR+
Sbjct: 228 LRISSIEASQISDEVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRL 287

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           +   P +AI+SD IVGFPGET+++F  T + + +  +++   F YS R GTP + M +QV
Sbjct: 288 KEALPGLAITSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQV 347

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK---HGKEKGKLVGRSPWLQSVV 439
            E+VK +R+  L +   +    +  A  G+++E++ E+    G  +G  VG +     +V
Sbjct: 348 PEDVKNDRVHRLIELSNQLAKEYASAFEGEVLEIIPEEQFKDGDREGLYVGYTDNYLKIV 407

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG ++KV+IT         + V
Sbjct: 408 FEGSEELIGKLVKVKITKAGYPYNEAQFV 436


>gi|239623740|ref|ZP_04666771.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239521771|gb|EEQ61637.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 492

 Score =  404 bits (1038), Expect = e-110,   Method: Composition-based stats.
 Identities = 156/480 (32%), Positives = 257/480 (53%), Gaps = 36/480 (7%)

Query: 13  MVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHI 72
            V ++ D+   P    + ++GCQMN  DS ++  +  + GY  V S ++AD ++ NTC +
Sbjct: 21  QVKELSDRLGRPLTCCINTFGCQMNARDSEKLLGILETIGYRAVES-EEADFVLYNTCTV 79

Query: 73  REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGP 130
           RE A  +VY  LG++   K    K+   +++ + GC+ Q +   ++I +    V+++ G 
Sbjct: 80  RENANLRVYGRLGQLGAYK----KKHPQMMIALCGCMMQEKEVVDKIKKSYRYVDLIFGT 135

Query: 131 QTYYRLPELLE---------------------RARFGKRVVDTDYSVEDKFERLSIVDGG 169
              ++L EL+                      +    K V+D     +   E L +    
Sbjct: 136 HNIFKLAELVSLCLDSRKKEDESRKAAEGTPVKGHKHKMVIDVWEDTDQIVEDLPV---- 191

Query: 170 YNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLG 229
             RK    + + I  GC+ FC++C+VPY RG E SR   +++ E R+L  +GV E+ LLG
Sbjct: 192 -ERKYPFKSGVNIMFGCNNFCSYCIVPYVRGRERSRKPEEIIKEIRRLASDGVVEVMLLG 250

Query: 230 QNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMP 289
           QNVN+  GK L+    TF+ LL  + ++ G+ R+R+ TSHP+D+SD LI+       +  
Sbjct: 251 QNVNS-YGKNLET-PMTFAGLLREVEKVDGIRRIRFMTSHPKDLSDELIEVMAGSGKICR 308

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +LHLP+QSGS RILK MNR +T  ++  +  RI++  P I++++D IVGFPGET++DF  
Sbjct: 309 HLHLPLQSGSSRILKEMNRHYTKEQFLDLAARIKAAVPGISLTTDIIVGFPGETEEDFLE 368

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDAC 409
           T+D+V ++G+  AF+F YS R GTP + M +QV E+V  ER   L K++++         
Sbjct: 369 TLDVVRRVGFDSAFTFIYSKRTGTPAAAMEDQVPEDVVKERFDRLLKEVQDISAEVCCRD 428

Query: 410 VGQIIEVLIEKHGKEKGKLV-GRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
              + EVL+E+      +L+ GR      V        IG ++ V + + +     G+ V
Sbjct: 429 EHTVQEVLVEEVNDHSPELMTGRLSNNTVVHFPGDVSLIGKLVPVYLEESRGFYYMGKQV 488


>gi|118479478|ref|YP_896629.1| 2-methylthioadenine synthetase [Bacillus thuringiensis str. Al
           Hakam]
 gi|229186550|ref|ZP_04313711.1| hypothetical protein bcere0004_40930 [Bacillus cereus BGSC 6E1]
 gi|118418703|gb|ABK87122.1| conserved hypothetical protein [Bacillus thuringiensis str. Al
           Hakam]
 gi|228596809|gb|EEK54468.1| hypothetical protein bcere0004_40930 [Bacillus cereus BGSC 6E1]
          Length = 450

 Score =  404 bits (1038), Expect = e-110,   Method: Composition-based stats.
 Identities = 134/440 (30%), Positives = 234/440 (53%), Gaps = 21/440 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
                + GC++N Y++  +  +F   GYER      AD+ V+NTC +     +K    + 
Sbjct: 3   TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKADVYVINTCTVTNTGDKKSRQVIR 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R        +++  D ++ V GC AQ    EI+   P V++VVG Q   ++   +E  R 
Sbjct: 63  RA-------VRQNPDAVICVTGCYAQTSPAEIMA-IPGVDIVVGTQDREKMLGYIEEFRK 114

Query: 146 GKRVVDTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            ++ ++   ++     +E L +            A L IQEGC+ FCTFC++P+ RG+  
Sbjct: 115 ERQPINAVRNIMKTRVYEELDVP----YFTDRTRASLKIQEGCNNFCTFCIIPWARGLMR 170

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKGLVR 262
           SR   +V+ +A++L+D G  EI L G +     G G D +    + LL  + +E+ GL R
Sbjct: 171 SRDGKEVIKQAQQLVDAGYKEIVLTGIHTG---GYGEDIKDYNLAGLLRDMEAEVGGLKR 227

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LR ++     +SD +I+     +V++ +LH+P+QSGS+ +LK M R++T   +++ +DR+
Sbjct: 228 LRISSIEASQISDEVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRL 287

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           +   P +AI+SD IVGFPGET+++F  T + + +  +++   F YS R GTP + M +QV
Sbjct: 288 KEALPGLAITSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQV 347

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK---HGKEKGKLVGRSPWLQSVV 439
            E+VK +R+  L +   +    +     G+++E++ E+    G  +G  VG +     +V
Sbjct: 348 PEDVKNDRVHRLIELSNQLAKEYASQFEGEVLEIIPEEQFKEGDREGLYVGYTDNYLKIV 407

Query: 440 LNSKNHNIGDIIKVRITDVK 459
                  IG ++KV+IT   
Sbjct: 408 FEGSEELIGKLVKVKITKAG 427


>gi|313772146|gb|EFS38112.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes
           HL074PA1]
 gi|313810010|gb|EFS47731.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes
           HL083PA1]
 gi|313830338|gb|EFS68052.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes
           HL007PA1]
 gi|313833712|gb|EFS71426.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes
           HL056PA1]
 gi|314973343|gb|EFT17439.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes
           HL053PA1]
 gi|314976020|gb|EFT20115.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes
           HL045PA1]
 gi|314983958|gb|EFT28050.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes
           HL005PA1]
 gi|315096258|gb|EFT68234.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes
           HL038PA1]
 gi|327326170|gb|EGE67960.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes
           HL096PA2]
 gi|327445942|gb|EGE92596.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes
           HL043PA2]
 gi|327448079|gb|EGE94733.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes
           HL043PA1]
 gi|328760608|gb|EGF74175.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes
           HL099PA1]
          Length = 494

 Score =  404 bits (1038), Expect = e-110,   Method: Composition-based stats.
 Identities = 162/463 (34%), Positives = 257/463 (55%), Gaps = 24/463 (5%)

Query: 13  MVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYE---RVNSMDDADLIVLNT 69
           M +  +     P  + V +YGCQMNV+DS R+  +    GY    R +++  AD++V NT
Sbjct: 1   MPNNTLQHTEAP-TYRVVTYGCQMNVHDSERIAGLLEEAGYVPDPRTDTLAPADVVVFNT 59

Query: 70  CHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG 129
           C +RE A  ++Y  LG +  +K++       + + V GC+AQ + + ++ R+P V+VV G
Sbjct: 60  CAVRENADNRLYGTLGHMAAVKSAH----PGMQLAVGGCMAQKDKDTVVARAPWVDVVFG 115

Query: 130 PQTYYRLPELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
                 LP LL+RAR      V+ + S+      L        R    +A+++I  GC+ 
Sbjct: 116 THNVGSLPVLLKRARHNATAQVEIEESLVTFPSNLP-----ARRDSAYSAWVSISVGCNN 170

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS 248
            CTFC+VP  RG E  R   +++ E R L++ GV EITLLGQNVN++  +   G++  F+
Sbjct: 171 TCTFCIVPQLRGKETDRRPGEILSEIRALVNEGVQEITLLGQNVNSYGVQF--GDRGAFA 228

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
            LL +   I GL R+R+T+ HP   +D +I+A  +   +MP LH+P+QSGSD +L+ M R
Sbjct: 229 KLLRACGNIDGLERVRFTSPHPAAFTDDVIEAMAETPNVMPSLHMPLQSGSDEVLRRMRR 288

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
            + + ++  I+DR+R   P  AI++D IVGFPGETD DF  TM +V++  ++ AF+F+YS
Sbjct: 289 SYRSTKFLGILDRVREAIPHAAITTDIIVGFPGETDKDFAETMRIVEESRFSAAFTFQYS 348

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKG- 426
            R  TP   M +QV + V  ER   L + + +     N A VG+ +EV+  +  G++   
Sbjct: 349 IRPNTPAGVMKDQVPKPVVQERYEQLVELVDDIAWQENKAQVGRAVEVMFAQGEGRKDEA 408

Query: 427 --KLVGRSPWLQSVVL---NSKN-HNIGDIIKVRITDVKISTL 463
             ++ GR+   + V +      +    GDI +V IT      L
Sbjct: 409 THRVTGRARDNRLVHVSLNPGDDVPRPGDIGEVVITSGHPHHL 451


>gi|327289365|ref|XP_003229395.1| PREDICTED: CDK5 regulatory subunit-associated protein 1-like
           [Anolis carolinensis]
          Length = 591

 Score =  404 bits (1038), Expect = e-110,   Method: Composition-based stats.
 Identities = 161/477 (33%), Positives = 246/477 (51%), Gaps = 38/477 (7%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P + ++++YGCQMNV D+     +    GY+R   +++AD+I+L TC IREKA + +++ 
Sbjct: 103 PGKVYLETYGCQMNVNDTEIAWSILQRSGYQRTTRLEEADVILLVTCSIREKAEQTIWNR 162

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           L  ++ LK  R    G L + + GC+A+   E+IL R  +V+VV GP +Y  LP LL  A
Sbjct: 163 LKHLKTLKLKRPASQGALRIGILGCMAERLKEKILDRERLVDVVAGPDSYRDLPRLLTVA 222

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             G++  +   S+E+ +  +  V          +AF++I  GCD  CT+C+VP+TRG E 
Sbjct: 223 ESGQQAANVLLSLEETYADILPVQTN---PSSTSAFVSIMRGCDNMCTYCIVPFTRGRER 279

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG---------------------KGLDG 242
           SR +  ++ E + L D GV E+TLLGQNVN++R                           
Sbjct: 280 SRPIVSILQEVQMLSDQGVKEVTLLGQNVNSYRDVSEVQFLSSAPSHLSRGFSTVYRPKQ 339

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
               F++LL  +S I   +R+R+T+ HP+D  D + +   +   +   LHLPVQSGS RI
Sbjct: 340 GGLRFAELLDRVSVIDPEMRIRFTSPHPKDFPDEVFQLMKERHNICKQLHLPVQSGSSRI 399

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           L++M R +T   Y +++  +R   P + + SD I GF GET+ D + T+ LV ++GY  A
Sbjct: 400 LEAMRRGYTREAYLELVHHVRDSLPGVTLGSDIIAGFCGETEADHQQTVSLVQEVGYRTA 459

Query: 363 FSFKYSPRLGTPG-SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKH 421
           F F YS R  T     + + V  +VK  R+  L    RE     N A VGQ+  VL+E  
Sbjct: 460 FIFAYSERQKTRAFHRLKDDVPLDVKRRRVKELTDVFREGASKANAAAVGQMQVVLVEGP 519

Query: 422 GKEKG-KLVGRSPWLQSVVLNSKN------------HNIGDIIKVRITDVKISTLYG 465
            K    +L GR+     V+                    GD + V+I+     TL G
Sbjct: 520 SKRSALELSGRNDGNIKVIFPDVKMDDGTGSGSTVHAQPGDYVLVKISSANSQTLKG 576


>gi|118581497|ref|YP_902747.1| MiaB-like tRNA modifying protein YliG [Pelobacter propionicus DSM
           2379]
 gi|238066600|sp|A1ATL9|RIMO_PELPD RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|118504207|gb|ABL00690.1| SSU ribosomal protein S12P methylthiotransferase [Pelobacter
           propionicus DSM 2379]
          Length = 450

 Score =  404 bits (1038), Expect = e-110,   Method: Composition-based stats.
 Identities = 135/458 (29%), Positives = 227/458 (49%), Gaps = 23/458 (5%)

Query: 20  QCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEK 79
           +    Q+  + S GC  N+ D+  M  +   Q YE      +AD+I++NTC   ++A ++
Sbjct: 2   ESTEKQKVSMVSLGCSKNLVDAEVMLGLLARQEYEITTDEREADIIIVNTCSFIKEAKQE 61

Query: 80  VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL 139
               +  +   KN    +G    ++V+GC+ Q   EE+ R  P V++ +G   Y R+ E+
Sbjct: 62  SIDAILDLAERKN----DGRCHTLIVSGCLPQRYQEELARELPEVDIFIGTGDYPRIAEI 117

Query: 140 LERARFGKRVV----DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
           L         +    D D+  ++   RL+     +       ++L I EGC   C++C++
Sbjct: 118 LAEKSGTDEQLCYIGDPDFVFDETLPRLNSSPAWF-------SYLKIGEGCSNRCSYCII 170

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
           P  RG   SR L  +V EA +L   GV E+ ++ Q++  +     DG   T   LL  L 
Sbjct: 171 PKLRGPYRSRPLEALVAEAEQLASRGVKELNIISQDITRYGSDMEDG--TTLETLLRRLV 228

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
           +I G+  +R   ++P  +SD LI    D   +  YL +P+Q  SD +LK M RR    + 
Sbjct: 229 QIDGIQWIRLLYAYPDGISDALIALIRDEPKICKYLDIPLQHISDPVLKLMRRRSNEQQI 288

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
           R+++ ++R   P +A+ +  IVGFPGET +DF + M  V++  + +   F YS   GTP 
Sbjct: 289 RELLAKLRREIPTLALRTSLIVGFPGETMEDFTSLMQFVEQARFDRLGVFCYSREEGTPA 348

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-----KGKLVG 430
           + M +QV E VK ER   L +         N   +G   +V++E + +E     KG+   
Sbjct: 349 ATMPDQVSERVKRERHRKLMRIQARLSFKRNRELIGTTEQVIVEGYSEETELLLKGRSSR 408

Query: 431 RSPWLQS-VVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
           ++P +   V + +   ++GDI+ +RITD     L GE+
Sbjct: 409 QAPDIDGQVYITAGTADVGDIVALRITDSSDYDLIGEI 446


>gi|228923063|ref|ZP_04086355.1| hypothetical protein bthur0011_40430 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228836561|gb|EEM81910.1| hypothetical protein bthur0011_40430 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 450

 Score =  404 bits (1038), Expect = e-110,   Method: Composition-based stats.
 Identities = 135/449 (30%), Positives = 236/449 (52%), Gaps = 21/449 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
                + GC++N Y++  +  +F   GYER      AD+ V+NTC +     +K    + 
Sbjct: 3   TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKADVYVINTCTVTNTGDKKSRQVIR 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R        +++  D ++ V GC AQ    EI+   P V++VVG Q   ++   +E  R 
Sbjct: 63  RA-------VRQNPDAVICVTGCYAQTSPAEIMA-IPGVDIVVGTQDREKMLGYIEEFRK 114

Query: 146 GKRVVDTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            ++ ++   ++     +E L +            A L IQEGC+ FCTFC++P+ RG+  
Sbjct: 115 ERQPINAVRNIMKTRVYEELDVP----YFTDRTRASLKIQEGCNNFCTFCIIPWARGLMR 170

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKGLVR 262
           SR   +V+ +A++L+D G  EI L G +     G G D +    + LL  + +E+ GL R
Sbjct: 171 SRDGKEVIKQAQQLVDAGYKEIVLTGIHTG---GYGEDIKDYNLAGLLRDMEAEVGGLKR 227

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LR ++     +SD +I+     +V++ +LH+P+QSGS+ +LK M R++T   +++ +DR+
Sbjct: 228 LRISSIEASQISDEVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRL 287

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           +   P +AI+SD IVGFPGET+++F  T + + +  +++   F YS R GTP + M +QV
Sbjct: 288 KEALPGLAITSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQV 347

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK---HGKEKGKLVGRSPWLQSVV 439
            E+VK +R+  L +   +    +     G+++E++ E+    G  +G  VG +     +V
Sbjct: 348 PEDVKNDRVHRLIELSNQLAKEYASGFEGEVLEIIPEEQFKEGDREGLYVGYTDNYLKIV 407

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG ++KV+IT         + V
Sbjct: 408 FEGSEELIGKLVKVKITKAGYPYNEAQFV 436


>gi|229093380|ref|ZP_04224485.1| hypothetical protein bcere0021_41060 [Bacillus cereus Rock3-42]
 gi|228689974|gb|EEL43777.1| hypothetical protein bcere0021_41060 [Bacillus cereus Rock3-42]
          Length = 478

 Score =  404 bits (1038), Expect = e-110,   Method: Composition-based stats.
 Identities = 135/449 (30%), Positives = 236/449 (52%), Gaps = 21/449 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
                + GC++N Y++  +  +F   GYER      AD+ V+NTC +     +K    + 
Sbjct: 3   TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKADVYVINTCTVTNTGDKKSRQVIR 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R        +++  D ++ V GC AQ    EI+   P V++VVG Q   ++   +E  R 
Sbjct: 63  RA-------VRQNPDAVICVTGCYAQTSPAEIMA-IPGVDIVVGTQDREKMLGYIEEFRK 114

Query: 146 GKRVVDTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            ++ ++   ++     +E L +            A L IQEGC+ FCTFC++P+ RG+  
Sbjct: 115 ERQPINAVRNIMKTRVYEELDVP----YFTDRTRASLKIQEGCNNFCTFCIIPWARGLMR 170

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKGLVR 262
           SR   +V+ +A++L+D G  EI L G +     G G D +    + LL  + +E+ GL R
Sbjct: 171 SRDGKEVIKQAQQLVDAGYKEIVLTGIHTG---GYGEDIKDYNLAGLLRDMEAEVGGLKR 227

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LR ++     +SD +I+     +V++ +LH+P+QSGS+ +LK M R++T   +++ +DR+
Sbjct: 228 LRISSIEASQISDEVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRL 287

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           +   P +AI+SD IVGFPGET+++F  T + + +  +++   F YS R GTP + M +QV
Sbjct: 288 KEALPGLAITSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQV 347

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK---HGKEKGKLVGRSPWLQSVV 439
            E+VK +R+  L +   +    +     G+++E++ E+    G  +G  VG +     +V
Sbjct: 348 PEDVKNDRVHRLIELSNQLAKEYASQFEGEVLEIIPEEQFKEGDREGLYVGYTDNYLKIV 407

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG ++KV+IT         + V
Sbjct: 408 FEGSEELIGKLVKVKITKAGYPYNEAQFV 436


>gi|189501144|ref|YP_001960614.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Chlorobium
           phaeobacteroides BS1]
 gi|229890477|sp|B3ENP4|MIAB_CHLPB RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|189496585|gb|ACE05133.1| RNA modification enzyme, MiaB family [Chlorobium phaeobacteroides
           BS1]
          Length = 447

 Score =  404 bits (1038), Expect = e-110,   Method: Composition-based stats.
 Identities = 157/447 (35%), Positives = 247/447 (55%), Gaps = 14/447 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + ++ +++++GCQMN  D+  +  +   +GY    S + ADL++LNTC +RE A EK+  
Sbjct: 12  MTKKVYIRTFGCQMNQADTEIITALLQDEGYVMTGSEERADLVILNTCAVRENAVEKILH 71

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            L  ++     + +    LLV V GCV Q   E++   +  ++ + GP TY +LP ++  
Sbjct: 72  TLDHMK----GKRRSRPGLLVGVIGCVPQYYREKMFGMADGIDFLAGPDTYRQLPAMIAN 127

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           A  G R  D  +S ++ +  +        R   ++AF+ +  GC+  C FCVVP+TRG E
Sbjct: 128 AGQGIRGADFGFSSDETYCGIEPA-----RSGTISAFIPVMRGCNNRCAFCVVPFTRGKE 182

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR    V+++  +L  +G  EITLLGQNVN++     D   C F++LL  ++     VR
Sbjct: 183 RSRPFRSVLEDVGRLAASGYKEITLLGQNVNSYSD---DEAACDFTELLDRVAVAAEGVR 239

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP+D+S+ L++     + +   +HLPVQSGS R+LK MNR HT  EY + I  I
Sbjct: 240 IRFTTSHPKDISESLVRVIAARNNICNAIHLPVQSGSTRMLKLMNRGHTREEYFEKIAMI 299

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN-MLEQ 381
           RS  P + +S+D I GF GET +D +AT+ +++ + +  A+ F YS R GT  +  + + 
Sbjct: 300 RSAIPGVTVSTDLIAGFCGETLEDHQATLSMMEDVRFDFAYMFYYSVRPGTYAAKHLPDD 359

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440
           V E  K  RL  +           N A VG ++EVL E   K   + L+GR+   + VV 
Sbjct: 360 VPEEEKKRRLEEIIALQGSISGERNAAEVGAVVEVLAESESKRSSEMLMGRTDTNRVVVF 419

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGEL 467
           +      GD++KVRI     +TL G  
Sbjct: 420 DRHGFEAGDLVKVRIRSSTPATLIGTP 446


>gi|331083857|ref|ZP_08332966.1| ribosomal protein S12 methylthiotransferase rimO [Lachnospiraceae
           bacterium 6_1_63FAA]
 gi|330403282|gb|EGG82842.1| ribosomal protein S12 methylthiotransferase rimO [Lachnospiraceae
           bacterium 6_1_63FAA]
          Length = 446

 Score =  404 bits (1038), Expect = e-110,   Method: Composition-based stats.
 Identities = 136/449 (30%), Positives = 216/449 (48%), Gaps = 16/449 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++    S GC  N+ DS  M  M    GY   N   +A++IV+NTC     A E+  + +
Sbjct: 2   RKVLFISLGCDKNLADSEEMLGMLVENGYTLTNDETEAEIIVVNTCAFIHDAKEESINSI 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             +   K      G   +++V GC+AQ   EEI++  P V+ V+G  ++  + + L++  
Sbjct: 62  LEMARYKTE----GVLKVLLVTGCLAQRYKEEIIKEIPEVDAVLGTTSFGDIIKALDKVF 117

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G+R ++     +D      I         G   +L I EGCDK CT+C++P  RG   S
Sbjct: 118 EGERYLE----FKDINALTEISKKRVLTTGGYYGYLKIAEGCDKRCTYCIIPKLRGNYRS 173

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
             + Q++ +A  L   GV E+ L+ Q      GK + G+KC    LL  L +I G+  +R
Sbjct: 174 IPMEQLISQAEYLAGQGVRELILVAQETT-VYGKDIYGKKC-LHKLLKELCKIPGIQWIR 231

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
               +P ++   LI+   +   +  YL LP+Q  SD+ILK M RR T  E   I+  +R 
Sbjct: 232 ILYCYPEEIYPELIQTMKEEKKICHYLDLPIQHCSDKILKKMGRRTTKQELIDIVTLLRK 291

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             PDI + +  I GFPGET++D    M+ +D + + +   F YS    TP +NM  Q+ E
Sbjct: 292 EIPDIILRTTLITGFPGETEEDHEELMEFIDTMEFDRLGVFTYSAEEDTPAANMPNQIAE 351

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVL 440
            VK +R   L +  +E  +   +  +G  +EV+IE    ++   VGR+    P +   + 
Sbjct: 352 EVKQDRQAELMELQQEISIDKGNDKIGTCVEVMIEGKVADENAYVGRTYGDAPNVDGYIF 411

Query: 441 --NSKNHNIGDIIKVRITDVKISTLYGEL 467
                    GD  +V +T      L GEL
Sbjct: 412 INTDTELMSGDFARVHVTGALEYDLIGEL 440


>gi|228910147|ref|ZP_04073966.1| hypothetical protein bthur0013_42950 [Bacillus thuringiensis IBL
           200]
 gi|228849430|gb|EEM94265.1| hypothetical protein bthur0013_42950 [Bacillus thuringiensis IBL
           200]
          Length = 450

 Score =  403 bits (1037), Expect = e-110,   Method: Composition-based stats.
 Identities = 136/449 (30%), Positives = 237/449 (52%), Gaps = 21/449 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
                + GC++N Y++  +  +F   GYER      AD+ V+NTC +     +K    + 
Sbjct: 3   TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKADVYVINTCTVTNTGDKKSRQVIR 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R        +++  D ++ V GC AQ    EI+   P V++VVG Q   ++   +E  R 
Sbjct: 63  RA-------VRQNPDAVICVTGCYAQTSPAEIMA-IPGVDIVVGTQDREKMLGYIEEFRK 114

Query: 146 GKRVVDTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            ++ ++   ++     +E L +            A L IQEGC+ FCTFC++P+ RG+  
Sbjct: 115 ERQPINAVRNIMKTRVYEELDVP----YFTDRTRASLKIQEGCNNFCTFCIIPWARGLMR 170

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKGLVR 262
           SR   +V+ +A++L+D G  EI L G +     G G D +    + LL  + +E+ GL R
Sbjct: 171 SRDGKEVIKQAQQLVDAGYKEIVLTGIHTG---GYGEDIKDYNLAGLLRDMEAEVGGLKR 227

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LR ++     +SD +I+     +V++ +LH+P+QSGS+ +LK M R++T   +++ +DR+
Sbjct: 228 LRISSIEASQISDEVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRL 287

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           +   P +AI+SD IVGFPGET+++F  T + + +  +++   F YS R GTP + M +QV
Sbjct: 288 KEALPGLAITSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQV 347

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK---HGKEKGKLVGRSPWLQSVV 439
            E+VK +R+  L +   +    +  A  G+++E++ E+    G  +G  VG +     +V
Sbjct: 348 PEDVKNDRVHRLIELSNQLAKEYASAFEGEVLEIIPEEQFKEGDREGLYVGYTDNYLKIV 407

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG ++KV+IT         + V
Sbjct: 408 FEGSEELIGKLVKVKITKSGYPYNEAQFV 436


>gi|153004383|ref|YP_001378708.1| (dimethylallyl)adenosine tRNA methylthiotransferase
           [Anaeromyxobacter sp. Fw109-5]
 gi|229890439|sp|A7HAH8|MIAB_ANADF RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|152027956|gb|ABS25724.1| RNA modification enzyme, MiaB family [Anaeromyxobacter sp. Fw109-5]
          Length = 460

 Score =  403 bits (1037), Expect = e-110,   Method: Composition-based stats.
 Identities = 179/465 (38%), Positives = 263/465 (56%), Gaps = 22/465 (4%)

Query: 11  AHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC 70
               S    +    ++ +V ++GCQMN  DS RM ++     + R  + DDADLI+LNTC
Sbjct: 9   PKPASAPGTRPAAARKVYVHTFGCQMNASDSDRMIELLGRHAFARAETPDDADLILLNTC 68

Query: 71  HIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGP 130
            +REKA +K+ S LGR R +K          L+ V+GCVAQ E + +L R P V+ V GP
Sbjct: 69  AVREKAEQKLLSALGRYREVKAR-----RGALIAVSGCVAQQEKDRLLARVPYVDFVFGP 123

Query: 131 QTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190
               +LPE++ RA   +         +D        D    R R  TAF+T  +GCD  C
Sbjct: 124 DNIGKLPEMVARAERERFAETGWMDSQDYV--FPQADPEAARGRP-TAFVTAMKGCDNVC 180

Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDL 250
            FC+VP+TRG E+SR+  ++V E   L + GV E+TL+GQNVN++ G       CTF++L
Sbjct: 181 AFCIVPHTRGREVSRAFPEIVAECASLAEVGVREVTLIGQNVNSYAG------GCTFAEL 234

Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
           L  ++ + G+ R+R+TTSHP D+SD L+    D   +MP+ HLPVQSGSD +L  M R +
Sbjct: 235 LRRVAAVPGIARIRFTTSHPHDLSDALVAVFRDEPKVMPHFHLPVQSGSDAVLARMRRDY 294

Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370
           T  EY    DR+R+ RP IAI++DFIVGFPGE + DF  ++ L+++  + Q+FSF +SPR
Sbjct: 295 TVAEYLDRFDRLRAARPGIAITTDFIVGFPGEGEADFEGSLALLERARFEQSFSFLFSPR 354

Query: 371 LGTPG------SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE 424
             T        +   +++   V  ERL  LQ   R    +   A +G+++EVL+E    E
Sbjct: 355 PKTVANLRLGTAPEWQEIPRAVAVERLERLQAAQRRIAAAALAAELGKVVEVLVEGASDE 414

Query: 425 KGKLVGRSPWLQSVVLNSKN--HNIGDIIKVRITDVKISTLYGEL 467
            G+ +GR+P  + V L +       G +++ RIT    S+L G  
Sbjct: 415 PGERLGRTPENRVVHLAADEAGAPTGALVRARITRAGGSSLSGTP 459


>gi|225570522|ref|ZP_03779547.1| hypothetical protein CLOHYLEM_06624 [Clostridium hylemonae DSM
           15053]
 gi|225160719|gb|EEG73338.1| hypothetical protein CLOHYLEM_06624 [Clostridium hylemonae DSM
           15053]
          Length = 441

 Score =  403 bits (1037), Expect = e-110,   Method: Composition-based stats.
 Identities = 135/448 (30%), Positives = 220/448 (49%), Gaps = 16/448 (3%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
               S GC  N+ DS  M  +   +GY+ V+   +AD+IV+NTC     A E+    +  
Sbjct: 3   ILFISLGCDKNLVDSEVMLGLLDREGYQIVDDEAEADIIVVNTCCFIHDAKEESIQTILE 62

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           +   K      G    ++V GC+AQ   +EI+   P V+ V+G  +Y ++ E ++ A  G
Sbjct: 63  MAEYKQ----TGRLKALIVTGCLAQRYQKEIVEEIPEVDAVLGTSSYDKIAEAVKEALEG 118

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
              ++    +ED      +         G  A+L I EGCDK CT+C++P  RG   S  
Sbjct: 119 HPCME----MEDIDVLPLVESKRLVTTGGHYAYLKIAEGCDKHCTYCIIPKIRGNFRSVP 174

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
           + ++V EA  L + GV E+ L+ Q      GK + GEK +   LL  L  I+GL  +R  
Sbjct: 175 MERLVKEAEALAEQGVKELILVAQETT-LYGKDIYGEK-SLHRLLRKLCGIEGLRWIRIL 232

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
             +P ++ D LI+   +   +  YL LP+Q  +D ILK M RR    +  +I+ ++R   
Sbjct: 233 YCYPEEIYDELIQVIKEEKKICHYLDLPIQHANDDILKRMGRRTDKKQLIEIVGKLRKEI 292

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           PDI + +  I GFPGET       M+ VD++ + +   F YSP   TP ++M +Q+ E +
Sbjct: 293 PDITLRTTLITGFPGETIKQHEELMEFVDEMAFERLGVFTYSPEEDTPAASMPDQIPEEI 352

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVLNS 442
           K++R   L +  ++      ++ VGQ + V+IE    ++   VGR+    P +  ++  +
Sbjct: 353 KSDRQAELMELQQDIVFEQAESMVGQKVLVMIEGRVADENAYVGRTYRDAPGVDGLIFIN 412

Query: 443 KNHNI--GDIIKVRITDVKISTLYGELV 468
               +  GD     +T      L GEL+
Sbjct: 413 TEEELMSGDFAMAEVTGASEYDLIGELI 440


>gi|325265342|ref|ZP_08132066.1| 2-methylthioadenine synthetase [Clostridium sp. D5]
 gi|324029343|gb|EGB90634.1| 2-methylthioadenine synthetase [Clostridium sp. D5]
          Length = 440

 Score =  403 bits (1036), Expect = e-110,   Method: Composition-based stats.
 Identities = 138/449 (30%), Positives = 224/449 (49%), Gaps = 16/449 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC  N+ D+  M  +  S+GY+  +    AD+IV+NTC     A E+    + 
Sbjct: 2   KILFISLGCDKNLVDTEVMLGLLASRGYQMTDDETAADIIVINTCCFIHDAKEESIQNIL 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +   K    KEG    +VV GC+A+   +EIL   P V+ V+G  +Y ++ E ++ A  
Sbjct: 62  EMAEYK----KEGSLKALVVTGCLAERYRQEILDEIPEVDAVLGTTSYDKILEAVDGALK 117

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G+  V       D      +         G  A+L I EGCDK CT+C++P  RG   S 
Sbjct: 118 GQHSVTIS----DINGIPEVETNRLVTTGGHFAYLKIAEGCDKHCTYCIIPKIRGNFRSV 173

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            + +++ EA+ L + GV E+ L+ Q      GK + GEK +   LL  L  ++G+  +R 
Sbjct: 174 PMEKLLKEAQYLAEQGVKELILVAQETT-LYGKDIYGEK-SLHLLLKELCRVQGIRWIRV 231

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
              +P +++D LI+   + + +  YL LP+Q  +D IL+ M RR +  E   II ++RS 
Sbjct: 232 LYCYPEEITDELIQVMKEEEKICHYLDLPIQHANDEILRRMGRRTSKQELTDIICKLRSE 291

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            PDI + +  I GFPGET +     M+ VD++ + +   F YSP   TP + M +Q+D+ 
Sbjct: 292 IPDICLRTTLITGFPGETKEQHEELMEFVDEMEFDRLGVFTYSPEEDTPAALMTDQIDDE 351

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVLN 441
           VK ER   L +  +E      +  VG+ + V+IE    ++   VGR+    P +  ++  
Sbjct: 352 VKEERQADLMELQQEIAFDNAERMVGREVLVMIEGKVADENAYVGRTYRDAPNVDGLIFV 411

Query: 442 SKNHNI--GDIIKVRITDVKISTLYGELV 468
           +    +  GD  +V ++      L G LV
Sbjct: 412 NTEEELMSGDFARVNVSGAVDYDLIGGLV 440


>gi|262197995|ref|YP_003269204.1| RNA modification enzyme, MiaB family [Haliangium ochraceum DSM
           14365]
 gi|262081342|gb|ACY17311.1| RNA modification enzyme, MiaB family [Haliangium ochraceum DSM
           14365]
          Length = 521

 Score =  403 bits (1036), Expect = e-110,   Method: Composition-based stats.
 Identities = 163/468 (34%), Positives = 264/468 (56%), Gaps = 38/468 (8%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R ++++YGCQMNV DS  +  +    GY R  S D AD+I++NTC +RE+A +KV +   
Sbjct: 45  RVYLETYGCQMNVADSDMLTGILLDAGYRRAASADAADVILINTCAVRERAEDKVLARAR 104

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           ++  LK    ++  D+++ +AGC+A+   + +L ++P V++V GP +Y R+ ELL RAR 
Sbjct: 105 QLSALK----RQRPDMVLGIAGCMAEHLKDSLLEQAPYVDIVAGPDSYRRMGELLARARD 160

Query: 146 -----------------------GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTI 182
                                  G +VVD      + +E LS   GG     G++ F+TI
Sbjct: 161 LAAPAAGERADSDAPRPVRAPGVGAQVVDVQLDKGETYEGLSGALGG----DGISGFVTI 216

Query: 183 QEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG 242
           Q GCDKFCTFCVVP+TRG E   +  +++ + R  ++ G  E+ LLGQ VN++R + +  
Sbjct: 217 QRGCDKFCTFCVVPFTRGRERGSAPREILRQVRAYVEAGYREVVLLGQTVNSYRYEDV-- 274

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
               F++LL +++ + GL R+R+T+ +P D +  +I A    D +  Y+HLP+QSGSD +
Sbjct: 275 ---GFAELLRAVARVDGLERIRFTSPYPVDFTAEVIDAIASEDKVCKYVHLPLQSGSDEV 331

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           L  M R +T  ++R I+  +R+  PDIAIS+D +  F GET+ D +AT+ L+ ++ +  A
Sbjct: 332 LARMRRGYTVDDFRAIVAALRARMPDIAISTDILSSFSGETEADHQATLALMRELRFDSA 391

Query: 363 FSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKH 421
           F F+YS R  T  +  + + V E  K  RL  +             A +G+   VL+   
Sbjct: 392 FMFRYSERSLTYAAKKLPDDVSEADKKRRLAEIIALQERISAEVFAAQIGKRERVLLHNR 451

Query: 422 GKEKG-KLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            K    +LVGR+   +SV++ +    IGDI++V I    ++TL+G  +
Sbjct: 452 SKRSDQQLVGRTDGFKSVIVPAAGLAIGDIVEVEIERATMATLFGRPI 499


>gi|228916942|ref|ZP_04080503.1| hypothetical protein bthur0012_41550 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|301055802|ref|YP_003794013.1| hypothetical protein BACI_c42790 [Bacillus anthracis CI]
 gi|228842663|gb|EEM87750.1| hypothetical protein bthur0012_41550 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|300377971|gb|ADK06875.1| conserved hypothetical protein [Bacillus cereus biovar anthracis
           str. CI]
          Length = 450

 Score =  403 bits (1036), Expect = e-110,   Method: Composition-based stats.
 Identities = 135/449 (30%), Positives = 235/449 (52%), Gaps = 21/449 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
                + GC++N Y++  +  +F   GYER      AD+ V+NTC +     +K    + 
Sbjct: 3   TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKADVYVINTCTVTNTGDKKSRQVIR 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R        +++  D ++ V GC AQ    EI+   P V++VVG Q   ++   +E  R 
Sbjct: 63  RA-------VRQNPDAVICVTGCYAQTSPAEIMA-IPGVDIVVGTQDREKMLGYIEEFRK 114

Query: 146 GKRVVDTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            ++ ++   ++     +E L +            A L IQEGC+ FCTFC++P+ RG+  
Sbjct: 115 ERQPINAVRNIMKTRVYEELDVP----YFTDRTRASLKIQEGCNNFCTFCIIPWARGLMR 170

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS-EIKGLVR 262
           SR   +V+ +A++L+D G  EI L G +     G G D +    + LL  +  E+ GL R
Sbjct: 171 SRDGKEVIKQAQQLVDAGYKEIVLTGIHTG---GYGEDIKDYNLAGLLRDMETEVGGLKR 227

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LR ++     +SD +I+     +V++ +LH+P+QSGS+ +LK M R++T   +++ +DR+
Sbjct: 228 LRISSIEASQISDEVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRL 287

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           +   P +AI+SD IVGFPGET+++F  T + + +  +++   F YS R GTP + M +QV
Sbjct: 288 KEALPGLAITSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQV 347

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK---HGKEKGKLVGRSPWLQSVV 439
            E+VK +R+  L +   +    +     G+++E++ E+    G  +G  VG +     +V
Sbjct: 348 PEDVKNDRVHRLIELSNQLAKEYASQFEGEVLEIIPEEQFKEGDREGLYVGYTDNYLKIV 407

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG ++KV+IT         + V
Sbjct: 408 FEGSEELIGKLVKVKITKAGYPYNEAQFV 436


>gi|320162381|ref|YP_004175606.1| putative tRNA-thiotransferase [Anaerolinea thermophila UNI-1]
 gi|319996235|dbj|BAJ65006.1| putative tRNA-thiotransferase [Anaerolinea thermophila UNI-1]
          Length = 438

 Score =  403 bits (1036), Expect = e-110,   Method: Composition-based stats.
 Identities = 149/444 (33%), Positives = 234/444 (52%), Gaps = 11/444 (2%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           ++ + + GCQMNV DS R+       GY      ++AD+IVLNTC +R+ A +K Y  L 
Sbjct: 2   KYHIWTEGCQMNVADSQRVASALEHLGYSVTPKPEEADVIVLNTCVVRQSAEDKAYGRLN 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQ-AEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            +R LK         L++ + GC+      + + +R P V+V   P     L   L ++ 
Sbjct: 62  SLRPLKEK----NPHLVINLMGCLVGIRNNDALRKRFPFVDVFSPPSDPSPLVAFLTQSE 117

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
             + + ++  +    +    +V     R + V+A + +  GC   CT+C++PY RGIE S
Sbjct: 118 V-RAMEESATATRYAYMDGDLVLPEVERGKLVSAHIPVVYGCSHACTYCIIPYRRGIERS 176

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R    ++ EAR L+  GV EITLLGQ +    GK           L+  LSEI+GL R+R
Sbjct: 177 RPPEDILAEARALVRQGVKEITLLGQ-IVDRYGKDNPAYPTLAGLLIR-LSEIEGLERIR 234

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           + TSHP  M+D L+ A   L  +MP++ +P Q+G D +L++M R +TA +YR++I RIR 
Sbjct: 235 FLTSHPNWMTDELLDAVASLPKVMPHIEVPAQAGDDTVLENMKRGYTAEQYRELIARIRE 294

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT-PGSNMLEQVD 383
             P ++I++D IVGFPGET++ F  T  L++ +    A   +YSPR GT     M + V 
Sbjct: 295 RIPGVSIATDIIVGFPGETEEQFMNTYRLLEDLRLDVAHLARYSPRPGTVSARRMKDDVP 354

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
           E  K  R   L++         N   +G+ + VL E+  K+  +  GR+P  + V + S+
Sbjct: 355 EEEKMRRFRMLEELQERIVGEINARYLGESVPVLFEEKVKQ--RWKGRTPTNKLVFVESE 412

Query: 444 NHNIGDIIKVRITDVKISTLYGEL 467
               G I +V+IT     ++ G L
Sbjct: 413 EDLHGQIREVKITWTGPWSMIGSL 436


>gi|255659775|ref|ZP_05405184.1| RNA modification enzyme, MiaB family [Mitsuokella multacida DSM
           20544]
 gi|260847845|gb|EEX67852.1| RNA modification enzyme, MiaB family [Mitsuokella multacida DSM
           20544]
          Length = 455

 Score =  403 bits (1036), Expect = e-110,   Method: Composition-based stats.
 Identities = 134/450 (29%), Positives = 212/450 (47%), Gaps = 17/450 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC  N+ D+  M  +    G E   +  +AD++++NTC   + A E+  + + 
Sbjct: 2   KAGFISLGCSKNLVDTEVMLGILKQHGIELTANPAEADILIVNTCAFIQSAKEESITTIL 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +   K S    G    ++VAGC+ Q   +E+L   P  + ++G   + R+ E +E    
Sbjct: 62  NMAEYKES----GRCRSLIVAGCLGQRYKQELLDEIPEADAIIGTGAWGRIMEAVEETLK 117

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G RVV          E    +          TA++ I EGC+  C FC +PY RG   SR
Sbjct: 118 GHRVVIAGKDEALYDENTPRI----TTTPSYTAYVKIAEGCNNRCAFCAIPYIRGDYRSR 173

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            +  + DE R L +NGV E+ L+ Q+     G+ L G     S+LL  + ++  L  +R 
Sbjct: 174 RIEDICDEVRHLTENGVREVVLIAQDSTE-YGRDLYGAPK-LSELLREIVKVPKLQWVRT 231

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
             S+P+  SD LI+       +  Y+ LP+Q   D +L+SM R  T  E R +I ++R  
Sbjct: 232 LYSYPKYFSDELIETIASEPKICKYVDLPLQHAHDAVLRSMRRPDTQEEMRALIKKLRER 291

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P + I S FIVGFPGETD  +    + ++++   +   F YS   GTP  +M  QV E 
Sbjct: 292 IPGVTIRSTFIVGFPGETDAQYHTLRNFIEEMRLDKVGVFTYSREEGTPAYDMPNQVPEE 351

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRS----PWLQSVVL 440
           +  ER   L     +     N +  G+ ++VL+E   +E     VGRS    P +   V 
Sbjct: 352 IMQERYHDLMSLQCKISEQINQSLEGKELDVLVEGRDEEQPNISVGRSYREAPEVDGQVY 411

Query: 441 --NSKNHNIGDIIKVRITDVKISTLYGELV 468
             N  +   GDI++VR+       + GE +
Sbjct: 412 VENDTDSKPGDIVRVRVLQGFTYDIVGERI 441


>gi|4006921|emb|CAB16849.1| putative protein [Arabidopsis thaliana]
 gi|7270587|emb|CAB80305.1| putative protein [Arabidopsis thaliana]
          Length = 587

 Score =  403 bits (1036), Expect = e-110,   Method: Composition-based stats.
 Identities = 169/512 (33%), Positives = 260/512 (50%), Gaps = 52/512 (10%)

Query: 7   LIGVAHMVSQIVDQCIVPQ-RFFVKSYGCQMNVYDSLRMEDMFFSQGY-ERVNSMDDADL 64
           L G    +   +D  I  + R + ++YGCQMN+ D   +  +  + GY E V   + A++
Sbjct: 57  LFGFILALRSTLDSDIASKGRIYHETYGCQMNINDMEIVLAIMKNSGYKEVVTDPESAEV 116

Query: 65  IVLNTCHIREKAAEKVYSFLGRIRNLKNSRI--------KEGGDLLVVVAGCVAQAEGEE 116
           I +NTC IRE A ++V+  L     LK            K      VVV GC+A+   ++
Sbjct: 117 IFVNTCAIRENAEQRVWQRLNYFWFLKREWKVNAATGRAKSLKPPKVVVLGCMAERLKDK 176

Query: 117 ILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGV 176
           IL    +V+VV GP  Y  LP LLE   +G++ ++T  S+E+ +  +S V      +  +
Sbjct: 177 ILDSDKMVDVVCGPDAYRDLPRLLEEVDYGQKGINTLLSLEETYADISPVRIS---ENSI 233

Query: 177 TAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR 236
           TAF+++  GC+  C FC+VP+TRG E SR +  ++ E  +L ++GV E+TLLGQNVN++ 
Sbjct: 234 TAFVSVMRGCNNMCAFCIVPFTRGRERSRPVESIIREVGELWESGVKEVTLLGQNVNSYN 293

Query: 237 GKGLDGE--------------------KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDC 276
               D E                       F+DLL  LS     +R R+T+ HP+D  D 
Sbjct: 294 DDSADRESGANWEYSEGFSSRCKVKNMGLRFADLLDRLSVEFPEMRFRFTSPHPKDYPDE 353

Query: 277 LIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFI 336
           L+    D   +   +HLP QSG+ RIL+ M R +T   Y  ++ +IRS+ PD+AI+SDFI
Sbjct: 354 LLYLMRDRHNICNLIHLPAQSGNSRILEQMRRGYTREAYLDLVKKIRSIIPDVAITSDFI 413

Query: 337 VGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN-MLEQVDENVKAERLLCLQ 395
            GF GET+++ + T+ LV  +GY  A+ F YS R  T       + V E VK  RL  L 
Sbjct: 414 TGFCGETEEEHQETLSLVRAVGYDMAYMFAYSMREKTHAHRNYTDDVPEEVKQRRLTELI 473

Query: 396 KKLREQQVSFNDACVGQIIEVLIEKHGKE--KGKLVGRSPWLQSV------------VLN 441
              RE      D+ VG    VL+E   K   + +L+G++     V            +L+
Sbjct: 474 DAFRETTGPCYDSQVGSTQLVLVEGPNKRAPETELIGKTDKGHRVSFVTKPLFDKACLLD 533

Query: 442 SKNHN----IGDIIKVRITDVKISTLYGELVV 469
             +      IGD ++V+I     ++L+GE + 
Sbjct: 534 GDDLKRNPGIGDFVEVQIEKSTRASLFGEALA 565


>gi|296132944|ref|YP_003640191.1| MiaB-like tRNA modifying enzyme YliG [Thermincola sp. JR]
 gi|296031522|gb|ADG82290.1| MiaB-like tRNA modifying enzyme YliG [Thermincola potens JR]
          Length = 439

 Score =  403 bits (1036), Expect = e-110,   Method: Composition-based stats.
 Identities = 119/451 (26%), Positives = 218/451 (48%), Gaps = 23/451 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC  N+ D+  M  +    G++ V     AD++++NTC   ++A E+  + + 
Sbjct: 3   KVGFTSLGCNKNLVDTEVMMGLLAEAGFKIVEEEKSADILIVNTCGFIDEAKEESINAVL 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +   K      G    ++VAGC+AQ   +E+L+  P ++ ++G     ++ +++  A  
Sbjct: 63  ELARYKEE----GNCKALIVAGCLAQRYKDELLKEMPEIDGIIGTGEIDKIVQVVRDAAA 118

Query: 146 GKR---VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           G R   V D ++  +    R              TA++ I EGCD  C++C +P  RG  
Sbjct: 119 GMRPELVTDREFIYDHTLPRWQSTP-------PYTAYVKIAEGCDNRCSYCAIPGIRGGY 171

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR    ++ E   L+  GV E+ L+ Q+     G  + G +   ++L+  ++ +  +  
Sbjct: 172 RSRPKESILQEVNDLVRRGVKEVILIAQDTT-RYGTDIYG-RYALAELIQEIASLP-VHW 228

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R   ++P  ++D LI+       +  YL +P+Q     I+K+MNR+    E  ++++R+
Sbjct: 229 IRILYAYPTRITDDLIQIIRGEPKVCKYLDMPIQHVDKDIIKAMNRQGDREEIMKLVNRL 288

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R   P I + +  IVGFPGET+  F+  ++ V +  + +   F YS    TP   +  QV
Sbjct: 289 RKEIPGITLRTTLIVGFPGETEAQFQNLLEFVREAKFDRLGVFTYSREESTPAGMLANQV 348

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRS----PWLQS 437
            E VK +R   + ++ ++  +  N   +G  I V++E    +  +  VGRS    P +  
Sbjct: 349 PEEVKIKRRDLIMQEQQKISLQKNRQKIGSTILVMVEGISADNPEIYVGRSDADAPEIDG 408

Query: 438 -VVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
            V  +    N GDI++V+ITD     L GE+
Sbjct: 409 LVYFSGPALNPGDIVQVKITDASEYDLIGEV 439


>gi|315452658|ref|YP_004072928.1| (Dimethylallyl)adenosine tRNA methylthiotransferase-MiaB
           [Helicobacter felis ATCC 49179]
 gi|315131710|emb|CBY82338.1| (Dimethylallyl)adenosine tRNA methylthiotransferase-MiaB
           [Helicobacter felis ATCC 49179]
          Length = 434

 Score =  403 bits (1036), Expect = e-110,   Method: Composition-based stats.
 Identities = 147/443 (33%), Positives = 247/443 (55%), Gaps = 19/443 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ ++++ GC MN  DS  +       GYE      +ADLI+LNTC +REK   K++S +
Sbjct: 6   KKVYIETMGCAMNTRDSQHLLSELHKVGYEESGDPKEADLILLNTCSVREKPERKLFSEI 65

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           G    +K +  K      + V GC A   G +IL+++P V+ V+G +   ++ +++ R +
Sbjct: 66  GHFAKIKKAGAK------IGVCGCSASHMGAQILQKAPSVDFVLGARNVSKISQIIHRPK 119

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
             +  +D D S                 K  + A + I  GCDK C++C+VP+TRG EIS
Sbjct: 120 AVEVALDHDESHYVFGHS----------KSALQALINISIGCDKHCSYCIVPHTRGKEIS 169

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG-LDGEKCTFSDLLYSLSEIKGLVRL 263
             +  ++ EAR  ++NG  EI LLGQNVN +  +   D  K TF+ LL SL +I+GL R+
Sbjct: 170 IPMDLILQEARYRVENGAKEIILLGQNVNNYGARFSTDHPKVTFTTLLESLCQIEGLKRI 229

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+T+ HP  M D  ++       +   +H+P+QSGS+ ILK+M R +T   Y   I+++R
Sbjct: 230 RFTSPHPLHMDDAFLECFAKHPQICKSIHIPLQSGSNAILKAMRRGYTKEWYLNRIEKLR 289

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           S+ PD+ I +D IVGFPGE++ DF  TMD+++++ +   +SF YSPR  T  ++   QV 
Sbjct: 290 SLVPDVGIGTDIIVGFPGESEVDFEHTMDVLEQVRFDTMYSFIYSPRPLTSAASWDHQVP 349

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
             +  + L  LQ++ +E         +G++ +VL+E    ++G+  GRS   + +   ++
Sbjct: 350 YEIAQQNLSRLQQRHQEILEQKAKTQLGKVYQVLVE--SIKEGRAQGRSDQGRLLSFEAE 407

Query: 444 NHNIGDIIKVRITDVKISTLYGE 466
              +GD+++V +      +L G+
Sbjct: 408 GVQVGDLVEVEVRAHHRGSLQGQ 430


>gi|311031621|ref|ZP_07709711.1| ribosomal protein S12 methylthiotransferase [Bacillus sp. m3-13]
          Length = 454

 Score =  403 bits (1036), Expect = e-110,   Method: Composition-based stats.
 Identities = 138/452 (30%), Positives = 239/452 (52%), Gaps = 22/452 (4%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           +P      + GC++N Y++  +  +F +  YER      AD+ V+NTC +     +K   
Sbjct: 1   MP-TVAFHTLGCKVNHYETEAIWQLFKANNYERTEFEGTADVYVINTCTVTNTGDKKSRQ 59

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            + R        I++  D ++ V GC AQ    EI+   P V+VVVG Q   ++ + +E+
Sbjct: 60  VIRRA-------IRKNPDAVICVTGCYAQTSPAEIMA-IPGVDVVVGTQDRVKMLDYIEQ 111

Query: 143 ARFGKRVVDTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
            +  ++ ++   ++     +E L +            A L IQEGC+ FCTFC++P+ RG
Sbjct: 112 FKQERQPINGVGNIMKARVYEELDVP----AFTDRTRASLKIQEGCNNFCTFCIIPWARG 167

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE-IKG 259
           +  SR   +VV +A++L+D G  EI L G +     G G D +   F+ LL  L E ++G
Sbjct: 168 LMRSRDPQEVVTQAQQLVDAGYKEIVLTGIHTG---GYGEDMKDYNFAMLLRELDEKVEG 224

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           L R+R ++     ++D +I+   + D ++ +LH+P+QS S+ +LK M R++T   + + +
Sbjct: 225 LKRIRISSIEASQITDEVIEVLNNSDKIVRHLHIPIQSASNTVLKRMRRKYTMEFFAERL 284

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
           DR++   P +AI+SD IVGFPGET+++F  T + + +  +++   F YS R GTP + M 
Sbjct: 285 DRLKEALPGLAITSDVIVGFPGETEEEFMETYNFIKEHKFSELHVFPYSKRTGTPAARMT 344

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE---KGKLVGRSPWLQ 436
           +QVDE +K ER+  L     +    +      +++EV+ E+  KE   +G  VG +    
Sbjct: 345 DQVDEEMKNERVHRLIALSDQLAKEYASTFEEEVLEVIPEEIYKEAPDQGLYVGYTDNYL 404

Query: 437 SVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            VV  +    +G ++KV+I         G+ V
Sbjct: 405 KVVFPATEEMVGKLVKVKIAKAGYPYNEGQFV 436


>gi|317056657|ref|YP_004105124.1| RNA modification enzyme, MiaB family [Ruminococcus albus 7]
 gi|315448926|gb|ADU22490.1| RNA modification enzyme, MiaB family [Ruminococcus albus 7]
          Length = 465

 Score =  403 bits (1035), Expect = e-110,   Method: Composition-based stats.
 Identities = 159/445 (35%), Positives = 240/445 (53%), Gaps = 21/445 (4%)

Query: 28  FVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRI 87
           ++ SYGCQ NV D  +++ M    GY   +  D A LI+LNTC +RE A ++V+  +G  
Sbjct: 36  YIHSYGCQQNVSDGEKLKGMLDKIGYGFTDDTDTAQLILLNTCAVRENAEDRVFGNIGNF 95

Query: 88  RNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELL-ERAR 144
           + LK        DL++ + GC+AQ +   ++I      V++V G   Y     +L E   
Sbjct: 96  KKLKEQ----NKDLVIGICGCMAQQKHVADKIKESYRQVDLVFGTFAYNEFYSMLWEIIS 151

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
             KR+ +      +  E ++       R     AF+ I  GC+ FCT+C+VPY RG E S
Sbjct: 152 KHKRLFNQSEVCTEIDESMT-----QLRDDKFRAFVPIMYGCNNFCTYCIVPYVRGRERS 206

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R    V+ E + L++ G  EITLLGQNVN++           F  LL  + +I+G  R+R
Sbjct: 207 RKPEAVLAEVKSLVEQGYKEITLLGQNVNSYA--------YGFPQLLKDIDKIQGKFRIR 258

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           + +SHP+D +  LI    D + +  +LHLPVQ+GSDR+LK+MNRR+T  +Y ++ID  R 
Sbjct: 259 FMSSHPKDATKELIDTIIDSEHICKHLHLPVQAGSDRVLKAMNRRYTTEKYLEMIDYARG 318

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             P  + ++D IVGFPGE+ ++F  T D++ ++ Y   +SF YS R GTP + M + + +
Sbjct: 319 RMPHFSFTTDLIVGFPGESYEEFCQTKDIIKRVKYDNIYSFVYSRRSGTPAAKMEDNISD 378

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVLNSK 443
             K   L  L  + RE    +    VGQ +EVL E  G+  +G L G++     V   + 
Sbjct: 379 KQKGLWLRELLLEQREITCEWFGRFVGQTVEVLAEGEGRTAEGWLTGKNDENIIVEFPAD 438

Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468
              IG+ +KVRI       L GELV
Sbjct: 439 KKYIGEFVKVRINKAMNWALSGELV 463


>gi|197121922|ref|YP_002133873.1| (dimethylallyl)adenosine tRNA methylthiotransferase
           [Anaeromyxobacter sp. K]
 gi|229890440|sp|B4UK35|MIAB_ANASK RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|196171771|gb|ACG72744.1| RNA modification enzyme, MiaB family [Anaeromyxobacter sp. K]
          Length = 464

 Score =  403 bits (1035), Expect = e-110,   Method: Composition-based stats.
 Identities = 188/451 (41%), Positives = 264/451 (58%), Gaps = 22/451 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ +V ++GCQMN  DS RM ++     Y R  S D+ADLI+LNTC +REKA +K+ S L
Sbjct: 27  RKVYVHTFGCQMNESDSDRMVELLGRHAYARAASADEADLILLNTCAVREKAEQKLLSAL 86

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR R +K          L+ V+GCVAQ E + +L R P V+ V GP    RLPE++ERAR
Sbjct: 87  GRYREVKAR-----RGALIAVSGCVAQQEKDRLLARVPYVDFVFGPDNIGRLPEMVERAR 141

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
             +R  +T +   +++      D    R R VTAF+T  +GCD  C FC+VP+TRG E+S
Sbjct: 142 -DERFAETGWMDSEEY-VFPRADPEAARGR-VTAFVTAMKGCDNVCAFCIVPHTRGREVS 198

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R    VV E   L   GV E+TL+GQNVN++ G       CTF+DLL  ++ + G+ R+R
Sbjct: 199 RPFPDVVAECAALAGVGVREVTLIGQNVNSYTG------GCTFADLLRRVAAVPGIDRIR 252

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +TTSHP D+SD L++   D   +MP+ HLPVQSGSD +L+ M R ++  EY    DR+R+
Sbjct: 253 FTTSHPHDLSDALVEVFRDEPKVMPHFHLPVQSGSDAVLRRMRRDYSVAEYLDRFDRLRA 312

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE---- 380
            RP IAI++DFIVGFPGETD DF A++ L+++  + Q+FSF +SPR  T  +  L     
Sbjct: 313 ARPGIAITTDFIVGFPGETDADFEASLALLERARFEQSFSFVFSPRPHTVAAVRLGSAPE 372

Query: 381 --QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSV 438
              V       RL  L    R          +G+++EVL+E    E G+ +GR+P  + V
Sbjct: 373 WRDVPREAAVARLERLLAAQRRIAGEILAGELGKVVEVLVEGPSDEPGERLGRTPENRVV 432

Query: 439 VL--NSKNHNIGDIIKVRITDVKISTLYGEL 467
            L  +      G  + VRIT    S+L G L
Sbjct: 433 HLAADEAAAPAGARVAVRITRAGGSSLSGTL 463


>gi|296454331|ref|YP_003661474.1| MiaB family RNA modification protein [Bifidobacterium longum subsp.
           longum JDM301]
 gi|296183762|gb|ADH00644.1| RNA modification enzyme, MiaB family [Bifidobacterium longum subsp.
           longum JDM301]
          Length = 479

 Score =  403 bits (1035), Expect = e-110,   Method: Composition-based stats.
 Identities = 161/454 (35%), Positives = 247/454 (54%), Gaps = 25/454 (5%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVN----SMDDADLIVLNTCHIREKAAEKVYS 82
           F + + GCQMNV+DS R+  +  + GY        + +D DL+VLNTC +RE AAE++Y 
Sbjct: 26  FHIHTLGCQMNVHDSERIAGVLEANGYVPATEGQINDNDLDLLVLNTCAVRENAAERMYG 85

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +GR   +K        +L + V GC+AQ + ++I   +P V+ V G +    LP+LL++
Sbjct: 86  TIGRFNRVKL----VRPNLQIAVGGCMAQLDRKKIADTAPWVSAVFGTKNIEDLPKLLDQ 141

Query: 143 ARF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
            R  GK  V     +     +L        R   +++++ I  GC+  CTFC+VP TRG 
Sbjct: 142 NRATGKAQVQVTEQLRQFPSQLPAA-----RASRISSWVAISVGCNNTCTFCIVPTTRGK 196

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E  R    ++DE R+ + +G  E+TLLGQNVN++ G G+ G++  FS LL +   I GL 
Sbjct: 197 EKDRRPGDILDEIRQCVADGAKEVTLLGQNVNSF-GYGI-GDRYAFSKLLRACGTIDGLE 254

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+T+ HP   +D +I A  +   +M  LH P+QSGSDRIL++M R + + ++  I+ R
Sbjct: 255 RVRFTSPHPAAFTDDVIAAMAETPNIMHQLHFPLQSGSDRILRAMRRSYRSAKFLDILGR 314

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           IR   PD  IS+D IVGFPGET++DF+ TMD+V +  ++ AF+F YSPR GTP + M EQ
Sbjct: 315 IREAMPDAQISTDIIVGFPGETEEDFQQTMDVVRQARFSSAFTFIYSPRPGTPAAAM-EQ 373

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK----HGKEKGKLVGRSPWLQS 437
           +  +V  +R   L     +          G+ +EV+I         +  ++ GR      
Sbjct: 374 IPRDVVQDRFDRLVALQEQITEENLATFEGRDVEVMITGKLGKKDTDTHRVTGREKTGVL 433

Query: 438 VVLNSKN----HNIGDIIKVRITDVKISTLYGEL 467
           V +          IGD + V +T      L  + 
Sbjct: 434 VHIGVPEGEPVPEIGDFVTVTVTHAGRHNLLADP 467


>gi|242279951|ref|YP_002992080.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Desulfovibrio
           salexigens DSM 2638]
 gi|242122845|gb|ACS80541.1| RNA modification enzyme, MiaB family [Desulfovibrio salexigens DSM
           2638]
          Length = 458

 Score =  402 bits (1034), Expect = e-110,   Method: Composition-based stats.
 Identities = 180/457 (39%), Positives = 262/457 (57%), Gaps = 24/457 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +F V ++GCQMNV+DS  +     S+G+  V    +AD+ ++NTC +R+K  +KVYS LG
Sbjct: 2   KFTVLTFGCQMNVHDSDWLIRAMESRGWTAVE-ESEADIFIINTCSVRDKPEQKVYSVLG 60

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER--A 143
           R+  L            V V GCVAQ  G+  L + P V +V G     + P+ L    A
Sbjct: 61  RLAPLCK-----NPGSFVAVGGCVAQQIGDGFLEKFPHVRLVFGSDGIAQAPDALVDLAA 115

Query: 144 RFGKRVVDTD----YSVEDKFERLSIVDGGYNR--KRGVTAFLTIQEGCDKFCTFCVVPY 197
              KR+V TD    Y   +  E     D            AF+ I +GCD FC +C+VPY
Sbjct: 116 NHEKRLVLTDFLGDYPEREGGEVQPNADLIPPGIGTIPGQAFVNIMQGCDNFCAYCIVPY 175

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257
           TRG + SRS   V+ E   L+ +GV EITLLGQNVN++ G    GE  +F+ LLY +S I
Sbjct: 176 TRGRQKSRSSEAVIKECAHLVKSGVREITLLGQNVNSF-GIDKKGEDISFAQLLYKISAI 234

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
           +GL R+R+TTSHP+D++  +IKA G+L  L P LHLPVQSGSDRILK M R++    Y  
Sbjct: 235 EGLERIRFTTSHPKDIAPEVIKAFGELPNLCPSLHLPVQSGSDRILKKMGRKYDRERYLG 294

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
           I++ ++   P+I++++D IVGFPGETD+DF  TMD+++++ Y  +FSFKYS R G     
Sbjct: 295 IVEGLKEACPNISLTTDLIVGFPGETDEDFEQTMDMLERVRYESSFSFKYSDRPGVAAVK 354

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK----LVGRSP 433
           M  +V E+V   RL  LQ++ +       +A  G    VL+E+  K + +      G+ P
Sbjct: 355 MKPKVPEDVAQARLARLQERQKRITRKSLEALEGHETVVLLERLSKRQEEGGMTWRGKDP 414

Query: 434 WLQSVVLN----SKNHNI-GDIIKVRITDVKISTLYG 465
             + V ++     +   + G ++KV+IT+ K  +L G
Sbjct: 415 GGRVVNVHFAGYGEEQKLGGKLVKVKITEAKNHSLVG 451


>gi|229019534|ref|ZP_04176351.1| hypothetical protein bcere0030_40370 [Bacillus cereus AH1273]
 gi|229025776|ref|ZP_04182175.1| hypothetical protein bcere0029_40670 [Bacillus cereus AH1272]
 gi|228735484|gb|EEL86080.1| hypothetical protein bcere0029_40670 [Bacillus cereus AH1272]
 gi|228741790|gb|EEL91973.1| hypothetical protein bcere0030_40370 [Bacillus cereus AH1273]
          Length = 450

 Score =  402 bits (1034), Expect = e-110,   Method: Composition-based stats.
 Identities = 134/449 (29%), Positives = 236/449 (52%), Gaps = 21/449 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
                + GC++N Y++  +  +F   GYER      +D+ V+NTC +     +K    + 
Sbjct: 3   TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKSDVYVINTCTVTNTGDKKSRQVIR 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R        +++  D ++ V GC AQ    EI+   P V++VVG Q   ++   +E  R 
Sbjct: 63  RA-------VRQNPDAVICVTGCYAQTSPAEIMA-IPGVDIVVGTQDREKMLGYIEEFRK 114

Query: 146 GKRVVDTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            ++ ++   ++     +E L +            A L IQEGC+ FCTFC++P+ RG+  
Sbjct: 115 ERQPINAVRNIMKTRVYEELDVP----YFTDRTRASLKIQEGCNNFCTFCIIPWARGLMR 170

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKGLVR 262
           SR   +V+ +A++L+D G  EI L G +     G G D +    + LL  + +E+ GL R
Sbjct: 171 SRDGKEVIKQAQQLVDAGYKEIVLTGIHTG---GYGEDIKDYNLAGLLRDMEAEVGGLKR 227

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LR ++     +SD +I+     +V++ +LH+P+QSGS+ +LK M R++T   +++ +DR+
Sbjct: 228 LRISSIEASQISDEVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRL 287

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           +   P +AI+SD IVGFPGET+++F  T + + +  +++   F YS R GTP + M +QV
Sbjct: 288 KEALPGLAITSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQV 347

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK---HGKEKGKLVGRSPWLQSVV 439
            E+VK +R+  L +   +    +     G+++E++ E+    G  +G  VG +     +V
Sbjct: 348 PEDVKNDRVHRLIELSNQLAKEYASQFEGEVLEIIPEEQFKEGDREGLYVGYTDNYLKIV 407

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG ++KV+IT         + V
Sbjct: 408 FEGSEDLIGKLVKVKITKAGYPYNEAQFV 436


>gi|320457927|dbj|BAJ68548.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis ATCC 15697]
          Length = 480

 Score =  402 bits (1034), Expect = e-110,   Method: Composition-based stats.
 Identities = 161/454 (35%), Positives = 246/454 (54%), Gaps = 25/454 (5%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVN----SMDDADLIVLNTCHIREKAAEKVYS 82
           F + + GCQMNV+DS R+  +  + GY        + +D DL+VLNTC +RE AAE++Y 
Sbjct: 27  FHIHTLGCQMNVHDSERIAGVLEANGYVPATEDQINDNDLDLLVLNTCAVRENAAERMYG 86

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +GR   +K        +L + V GC+AQ + ++I   +P V+ V G +    LP+LL++
Sbjct: 87  TIGRFNRVKL----VRPNLQIAVGGCMAQLDRKKIADTAPWVSAVFGTKNIEDLPKLLDQ 142

Query: 143 ARF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
            R  GK  V     +     +L        R   +++++ I  GC+  CTFC+VP TRG 
Sbjct: 143 NRATGKAQVQVTEQLRQFPSQLPAA-----RASRISSWVAISVGCNNTCTFCIVPTTRGK 197

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E  R    ++DE R+ +  G  E+TLLGQNVN++ G G+ G++  FS LL +   I GL 
Sbjct: 198 EKDRRPGDILDEIRQCVAGGAKEVTLLGQNVNSF-GYGI-GDRYAFSKLLRACGTIDGLE 255

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+T+ HP   +D +I A  +   +M  LH P+QSGSDRIL++M R + + ++  I+ R
Sbjct: 256 RVRFTSPHPAAFTDDVIAAMAETPNIMHQLHFPLQSGSDRILRAMRRSYRSAKFLDILGR 315

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           IR   PD  IS+D IVGFPGET++DF+ TMD+V +  ++ AF+F YSPR GTP + M EQ
Sbjct: 316 IREAMPDAQISTDIIVGFPGETEEDFQQTMDVVRQARFSSAFTFIYSPRPGTPAAAM-EQ 374

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK----HGKEKGKLVGRSPWLQS 437
           +  +V  +R   L     +          G+ +EV+I         +  ++ GR      
Sbjct: 375 IPRDVVQDRFDRLVALQEQITEENLATFEGRDVEVMITGKLGKKDTDTHRVTGREKTGVL 434

Query: 438 VVLNSKN----HNIGDIIKVRITDVKISTLYGEL 467
           V +          IGD + V +T      L  + 
Sbjct: 435 VHIGVPEGEPVPEIGDFVTVTVTHAGRHNLLADP 468


>gi|326791250|ref|YP_004309071.1| ribosomal protein S12 methylthiotransferase rimO [Clostridium
           lentocellum DSM 5427]
 gi|326542014|gb|ADZ83873.1| Ribosomal protein S12 methylthiotransferase rimO [Clostridium
           lentocellum DSM 5427]
          Length = 448

 Score =  402 bits (1034), Expect = e-110,   Method: Composition-based stats.
 Identities = 132/448 (29%), Positives = 217/448 (48%), Gaps = 15/448 (3%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
               S GC  N+ DS  M  +    G+      + AD+IV+NTC   E A ++    +  
Sbjct: 5   VSFVSLGCDKNLVDSEHMLGLLNQGGFSLTGDEEKADVIVVNTCCFIEDAKKESIENILE 64

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           +   K      G    ++V GC+AQ   +EIL   P V+ VVG  +Y ++ ++       
Sbjct: 65  VAGYKE----TGNCKALIVTGCMAQRYKQEILDEIPEVDAVVGTTSYDKIVDIANGILEQ 120

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           K +    + + D+     +         G  A++ I EGCDK CT+C++P  RG   SR 
Sbjct: 121 KGLRTQHFDLIDREMLDEMPR--ILTTAGYFAYVKISEGCDKHCTYCIIPKLRGKYRSRQ 178

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
           + ++  E  KL  +GV EI L+ Q+   +   G D E  + + LL+ L EI+G+  +R  
Sbjct: 179 MDKIKAEVEKLAADGVSEIILVAQDTTEY---GRDLENASLAKLLHELGEIEGIEWIRVL 235

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
             +P  ++D LI+       +  YL +P+Q  S  ILK M R+ +  + ++ + ++R   
Sbjct: 236 YCYPESITDELIEEIKTNPKVCKYLDIPIQHASTAILKRMARKSSLEQLKERLGKLRQEI 295

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           P IA+ +  IVGFPGET++DF+   D V ++ + +   F YS   GTP +   +Q+DE  
Sbjct: 296 PGIALRTTLIVGFPGETEEDFQILYDFVKEMRFDRLGVFTYSKEEGTPAALFEDQIDEKT 355

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQS-VVLN 441
           K +R   +         +     VG+ ++VLIE    ++   +GR+    P +   V + 
Sbjct: 356 KIKRRDAIMALQHGISSALTAEKVGKTMKVLIEGKITDEDVYIGRTYQDAPDIDGEVFVE 415

Query: 442 SKNHNI-GDIIKVRITDVKISTLYGELV 468
            +   I GD + VRIT      L GE+V
Sbjct: 416 YEGELISGDFVDVRITASNDYDLIGEIV 443


>gi|17228717|ref|NP_485265.1| hypothetical protein alr1222 [Nostoc sp. PCC 7120]
 gi|81853061|sp|Q8YXJ1|RIMO_NOSS1 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|17130569|dbj|BAB73179.1| alr1222 [Nostoc sp. PCC 7120]
          Length = 440

 Score =  402 bits (1034), Expect = e-110,   Method: Composition-based stats.
 Identities = 134/447 (29%), Positives = 213/447 (47%), Gaps = 19/447 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
              +   GC+ N  D+  M  +    GY    + + AD +++NTC   E A E+    L 
Sbjct: 6   TIAISHLGCEKNRIDTEHMLGLLVKAGYGVDTNEELADYVIVNTCSFIESAREESVRTLV 65

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +               +V+ GC+AQ    ++L   P    VVG   Y+++  ++ERA  
Sbjct: 66  ELAEANKK---------IVITGCMAQHFQTQLLEELPEAVAVVGTGDYHKIVSVIERAEQ 116

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G+RV  T  S E  +              GV A+L + EGCD  C FC++P+ RG + SR
Sbjct: 117 GERV--TLVSAEPTYIADETTPRYRTTTEGV-AYLRVAEGCDYRCAFCIIPHLRGNQRSR 173

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           ++  +V EA +L+  GV EI L+ Q +    G  + G K   ++LL +L +I  +  +R 
Sbjct: 174 TIESIVAEAEQLVAQGVQEIILISQ-ITTNYGLDIYG-KPKLAELLRALGKIN-VPWIRM 230

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
             ++P  ++  +I A  +   ++PYL LP+Q     +L+SMNR        +II+R++  
Sbjct: 231 HYAYPTGLTPDVIAAIQETPNVLPYLDLPLQHSHSEVLRSMNRPWQGRVNDEIIERLKIA 290

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P   + + FIVGFPGET+  F   +  V +  +     F +S   GTP   +  Q+ + 
Sbjct: 291 IPGAVLRTTFIVGFPGETEAQFEHLLQFVQRHEFDHVGVFTFSAEEGTPAYKLPNQLPQE 350

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVVLN 441
           V  ER   L    +      N   VG+ +EVLIE+   E GKL+GR    SP +   V  
Sbjct: 351 VMDERRDRLMALQQPISWRKNQQEVGKTVEVLIEQENPESGKLIGRSGRFSPEVDGQVYV 410

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                +G II V+I       L+G++V
Sbjct: 411 DGEAKLGTIIPVKIHSADEYDLFGQVV 437


>gi|269958944|ref|YP_003328733.1| putative 2-methylthioadenine synthetase [Anaplasma centrale str.
           Israel]
 gi|269848775|gb|ACZ49419.1| putative 2-methylthioadenine synthetase [Anaplasma centrale str.
           Israel]
          Length = 463

 Score =  402 bits (1034), Expect = e-110,   Method: Composition-based stats.
 Identities = 213/450 (47%), Positives = 292/450 (64%), Gaps = 17/450 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + +  +++SYGCQMNVYDSL +ED+    G+  V   +DAD+I++NTCH+REKAAEK+YS
Sbjct: 1   MTKGLYIESYGCQMNVYDSLMVEDILRPLGFAAVQRPEDADIIMVNTCHVREKAAEKLYS 60

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            LGR+R L+          L+VVAGCVAQAEGE +  R+P V+VVVGPQ+ + LPEL+ +
Sbjct: 61  ALGRMRMLRKE------GALIVVAGCVAQAEGEAVFERAPFVDVVVGPQSIHTLPELIMK 114

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           A    + ++ ++    KF+   ++       RGV+AF+++QEGCDKFCTFCVVPYTRG E
Sbjct: 115 ATRDAKQMNVEFPAISKFD---VISTDLLVSRGVSAFVSVQEGCDKFCTFCVVPYTRGPE 171

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SRS+  V+ E RKL D G  E+ LLGQNVNA+ G    G +     L+  ++E+ G+ R
Sbjct: 172 YSRSVEDVLAEVRKLADGGTKEVVLLGQNVNAYHG-TYKGNEWDLGRLIRKVAEVDGIER 230

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +RYTTSHPRDM   L  AH     L+P +HLPVQSGSD +L+ MNR+H+  EY  IID +
Sbjct: 231 IRYTTSHPRDMHSSLYDAHKHEPKLLPCVHLPVQSGSDSVLRKMNRKHSVQEYMDIIDTL 290

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           +  R DIA+SSDFIVGFPGET++DF ATMDLV  +G+A ++SFKYSPR GTPG+    QV
Sbjct: 291 KEARSDIALSSDFIVGFPGETEEDFEATMDLVRHVGFATSYSFKYSPRPGTPGAEYTNQV 350

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI---EKHGKEKGKLVGRSPWLQSVV 439
            E  K+ RL  LQ  L  QQ  F  + +G+ + VL+   E       ++ G+S  +Q V 
Sbjct: 351 PEEEKSSRLHRLQHLLLTQQRLFTKSMIGKTVSVLVCGTEGSRGCSNEVFGKSEHMQPVY 410

Query: 440 LNSKNHNIG---DIIKVRI-TDVKISTLYG 465
           ++      G    I  V++  +   S+L G
Sbjct: 411 ISVDGDPAGYRNKIFSVKVLEEGARSSLKG 440


>gi|149179348|ref|ZP_01857907.1| probable MiaB protein-putative tRNA-thiotransferase [Planctomyces
           maris DSM 8797]
 gi|148841820|gb|EDL56224.1| probable MiaB protein-putative tRNA-thiotransferase [Planctomyces
           maris DSM 8797]
          Length = 510

 Score =  402 bits (1034), Expect = e-110,   Method: Composition-based stats.
 Identities = 152/468 (32%), Positives = 251/468 (53%), Gaps = 29/468 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + ++++ GCQMN+ DS  +      +GYE   ++ +A+ I+ NTC +RE A  K+YS LG
Sbjct: 33  KLYIETVGCQMNMLDSELVVADLRKRGYELTQNVKEAETILFNTCSVREHAEHKIYSSLG 92

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R+R       ++    ++ V GC+AQ + + I +++P V+ VVG     ++  L+++AR 
Sbjct: 93  RLRY----GARKNPKKVIGVMGCMAQKDQKLIFQKAPQVDFVVGTGQLAQVASLIDKARV 148

Query: 146 GKRVVDTD--------------YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCT 191
                                   + + F+    +     R     AF+ I  GCDKFC+
Sbjct: 149 NHSQNVRSRELAVGLGRKDGKLAEITNSFQSYDPLRDPEMRPSPYQAFVRIMIGCDKFCS 208

Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLL 251
           +CVVP TRG E SRS  +++ E + L D GV E+TLLGQ VN+      DG+    SDLL
Sbjct: 209 YCVVPSTRGPEQSRSPREILSEVKVLADQGVKEVTLLGQTVNS-YKHTQDGKLFRLSDLL 267

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
           Y + +++G+ R+++ TS+P+DM+  L++A  DL     YLH+P+Q G + +LK M R +T
Sbjct: 268 YLIHDVEGISRIKFVTSYPKDMTTDLLEAIRDLPKATRYLHVPLQHGCNDVLKVMKRGYT 327

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
             +YR+++ R+  + P  ++SSDFIVG PGET++  + +++ + +  +  +F FKYS R 
Sbjct: 328 VEDYREMMQRVNEILPGCSVSSDFIVGHPGETEESHQLSLESIREFRFKNSFIFKYSERP 387

Query: 372 GTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE------ 424
           GT  +    +++ + VK  R   +     +     N   +G+ +EVL+E   K       
Sbjct: 388 GTKAAERFKDEIPDAVKKRRNNEMLAVQNQISEEDNAEFIGKQVEVLVEGPSKSAQKAIE 447

Query: 425 ---KGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
                +LVGRS   + VV +      G +  V I DV  +TL G +V 
Sbjct: 448 ESLAEQLVGRSNCDRIVVFDGNPRLAGSLATVEIFDVTPTTLIGGIVT 495


>gi|282908895|ref|ZP_06316713.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           subsp. aureus WW2703/97]
 gi|283958340|ref|ZP_06375791.1| Fe-S oxidoreductase [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|282327159|gb|EFB57454.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           subsp. aureus WW2703/97]
 gi|283790489|gb|EFC29306.1| Fe-S oxidoreductase [Staphylococcus aureus subsp. aureus
           A017934/97]
          Length = 448

 Score =  402 bits (1034), Expect = e-110,   Method: Composition-based stats.
 Identities = 139/436 (31%), Positives = 231/436 (52%), Gaps = 17/436 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
                + GC++N Y++  +  +F    YERV+   +AD+ V+NTC +     +K    + 
Sbjct: 3   TVAFHTLGCKVNHYETEAIWQLFKEANYERVDFEANADVFVINTCTVTNTGDKKSRQIIR 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R        I++  D ++ V GC AQ    EI+   P V+VVVG Q  ++L   ++  R 
Sbjct: 63  RA-------IRQNPDAVICVTGCYAQTSSAEIMG-IPGVDVVVGTQDRHKLLGYIDEFRK 114

Query: 146 GKRVVDT--DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            ++ ++   +     K+E L +            A L IQEGC+ FCTFC++P+ RG+  
Sbjct: 115 ERQPINGVGNIMKNRKYEELDVP----YFTDRTRASLKIQEGCNNFCTFCIIPWARGLMR 170

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR   +VV++A +L+++G  EI L G +     G G D +    + LL  L  I GL R+
Sbjct: 171 SRDPEKVVEQATQLVNSGYKEIVLTGIHTG---GYGQDLKDYNLAQLLRDLETINGLERI 227

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R ++     ++D +I        ++ +LH+P+QSGSD +LK M R++T   + + + ++ 
Sbjct: 228 RISSIEASQLTDEVIDVLERSTKVVRHLHIPLQSGSDTVLKRMRRKYTMDRFSERLTKLH 287

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              PD+A++SD IVGFPGET+++F+ T D + K  +++   F YSPR+GTP + M +Q+D
Sbjct: 288 KALPDLAVTSDVIVGFPGETEEEFQETYDFIVKHKFSELHVFPYSPRIGTPAARMDDQID 347

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
           E +K ER+  L     +    +       ++EV+ E+ G  +G LVG +     V     
Sbjct: 348 EEIKNERVHKLITLSNQLGKLYASKFDQDVLEVIPEEQGDTEGTLVGYADNYMKVQFEGD 407

Query: 444 NHNIGDIIKVRITDVK 459
              IG I+KV+IT   
Sbjct: 408 ESLIGQIVKVKITQAN 423


>gi|227495170|ref|ZP_03925486.1| possible tRNA 2-methylthioadenine synthetase [Actinomyces
           coleocanis DSM 15436]
 gi|226831622|gb|EEH64005.1| possible tRNA 2-methylthioadenine synthetase [Actinomyces
           coleocanis DSM 15436]
          Length = 485

 Score =  402 bits (1034), Expect = e-110,   Method: Composition-based stats.
 Identities = 159/455 (34%), Positives = 254/455 (55%), Gaps = 35/455 (7%)

Query: 36  MNVYDSLRMEDMFFSQGYERVNSMDDA------------DLIVLNTCHIREKAAEKVYSF 83
           MNV+DS RM  +  + GY  V  + +A            D++V+NTC +RE AA +++  
Sbjct: 1   MNVHDSERMAGLLAADGYVPVEQVPEAAARATEAGDGGADVVVINTCSVRENAANRLFGN 60

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LG++ ++K    K   D+ + V GC+AQ    +I++++P V+VV G      LP LL+RA
Sbjct: 61  LGQLASVK----KNRPDMQIAVGGCLAQQMRADIVKKAPFVDVVFGTHNIDVLPVLLKRA 116

Query: 144 RFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           R  +   V+ + S++     L              A+++I  GC+  CTFC+VP+ RG E
Sbjct: 117 RHNRDAAVEIEESLKVFPSTLP-----KKADSSYAAWVSISVGCNNTCTFCIVPHLRGKE 171

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
             R   +V+ E   ++  G  E+TLLGQNVN++      GE+  F+ LL +   I+GL R
Sbjct: 172 RDRRPGEVLAEIEAVVSEGAVEVTLLGQNVNSYGVSF--GERDAFAKLLRAAGNIEGLER 229

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LR+T+ HP   SD +I+A  +   +MP LH+P+QSGSDRIL+ M R +   ++  I++R+
Sbjct: 230 LRFTSPHPAAFSDDVIRAMAETPTVMPSLHMPLQSGSDRILRMMRRSYRRAKFEGILERV 289

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R + PD AI++D IVGFPGET++DF+ T+++V+K  +A AF+F YSPR GTP ++M +QV
Sbjct: 290 RELIPDAAITTDIIVGFPGETEEDFQQTLEVVEKARFASAFTFLYSPRPGTPAADMEDQV 349

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEK---GKLVGRSPWLQSV 438
            ++V AER   L     +          G  +EVLI E  G++     ++ GR+   + V
Sbjct: 350 PDDVAAERYKRLLALQEKISFEEMQKLEGTTVEVLIAETEGRKDLATRRISGRARDNRLV 409

Query: 439 VLN-------SKNHNIGDIIKVRITDVKISTLYGE 466
            +         ++   GD++   +T      L  +
Sbjct: 410 HVGLPAGFEYGRDIRPGDMVTAVVTHAAPHHLVAD 444


>gi|255004110|ref|ZP_05278911.1| 2-methylthioadenine synthetase (miaB) [Anaplasma marginale str.
           Virginia]
          Length = 463

 Score =  402 bits (1034), Expect = e-110,   Method: Composition-based stats.
 Identities = 212/450 (47%), Positives = 292/450 (64%), Gaps = 17/450 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + +  +++SYGCQMNVYDSL +ED+    G+  V   +DAD+I++NTCH+REKAAEK+YS
Sbjct: 1   MTKGLYIESYGCQMNVYDSLMVEDILRPLGFAAVQRPEDADIIMVNTCHVREKAAEKLYS 60

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            LGR+R L+          L+VVAGCVAQAEGE +  R+P V+VVVGPQ+ + LPEL+ +
Sbjct: 61  ALGRMRMLRKE------GALIVVAGCVAQAEGEAVFERAPFVDVVVGPQSIHTLPELIMK 114

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           A    + ++ ++    KF+   ++       RGV+AF+++QEGCDKFCTFCVVPYTRG E
Sbjct: 115 ATRDAKQMNVEFPAISKFD---VISTDLLVSRGVSAFVSVQEGCDKFCTFCVVPYTRGPE 171

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SRS+  V+ E RKL D G  E+ LLGQNVNA+ G    G +     L+  ++E+ G+ R
Sbjct: 172 YSRSVEDVLAEVRKLADGGTKEVVLLGQNVNAYHG-TYKGNEWDLGRLIRKVAEVDGIER 230

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +RYTTSHP+DM   L  AH     L+P +HLPVQSGSD +L+ MNR+H+  EY  IID +
Sbjct: 231 IRYTTSHPKDMHSSLYDAHKHEPKLLPCVHLPVQSGSDSVLRKMNRKHSVQEYMDIIDTL 290

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           +  R DIA+SSDFIVGFPGET++DF ATMDLV  +G+A ++SFKYSPR GTPG+    QV
Sbjct: 291 KEARSDIALSSDFIVGFPGETEEDFEATMDLVRHVGFATSYSFKYSPRPGTPGAEYTNQV 350

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI---EKHGKEKGKLVGRSPWLQSVV 439
            E  K+ RL  LQ  L  QQ  F  + +G+ + VL+   E       ++ G+S  +Q V 
Sbjct: 351 PEEEKSSRLHRLQHLLLTQQRLFTKSMIGKTVSVLVCGTEGSRSCSNEVFGKSEHMQPVY 410

Query: 440 LNSKNHNIG---DIIKVRI-TDVKISTLYG 465
           ++      G    I  V++  +   S+L G
Sbjct: 411 ISVDGDPAGYRNKIFSVKVLEEGARSSLKG 440


>gi|49483824|ref|YP_041048.1| hypothetical protein SAR1653 [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|257425701|ref|ZP_05602125.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257428362|ref|ZP_05604760.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257430999|ref|ZP_05607379.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257433687|ref|ZP_05610045.1| RNA modification protein [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257436601|ref|ZP_05612645.1| RNA modification protein [Staphylococcus aureus subsp. aureus M876]
 gi|282904158|ref|ZP_06312046.1| Fe-S oxidoreductase [Staphylococcus aureus subsp. aureus C160]
 gi|282905985|ref|ZP_06313840.1| MiaB tRNA modifying enzyme [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282911214|ref|ZP_06319016.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           subsp. aureus WBG10049]
 gi|282914383|ref|ZP_06322169.1| Fe-S oxidoreductase [Staphylococcus aureus subsp. aureus M899]
 gi|282919352|ref|ZP_06327087.1| MiaB-like tRNA modifying enzyme [Staphylococcus aureus subsp.
           aureus C427]
 gi|282924677|ref|ZP_06332345.1| MiaB-like tRNA modifying enzyme [Staphylococcus aureus subsp.
           aureus C101]
 gi|293503457|ref|ZP_06667304.1| MiaB tRNA modifying enzyme [Staphylococcus aureus subsp. aureus
           58-424]
 gi|293510474|ref|ZP_06669180.1| MiaB-like tRNA modifying enzyme [Staphylococcus aureus subsp.
           aureus M809]
 gi|293531014|ref|ZP_06671696.1| Fe-S oxidoreductase [Staphylococcus aureus subsp. aureus M1015]
 gi|295428154|ref|ZP_06820786.1| MiaB-like tRNA modifying enzyme [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|297590880|ref|ZP_06949518.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           subsp. aureus MN8]
 gi|49241953|emb|CAG40648.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|257271395|gb|EEV03541.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257275203|gb|EEV06690.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257278429|gb|EEV09065.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257281780|gb|EEV11917.1| RNA modification protein [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257283952|gb|EEV14075.1| RNA modification protein [Staphylococcus aureus subsp. aureus M876]
 gi|282313512|gb|EFB43907.1| MiaB-like tRNA modifying enzyme [Staphylococcus aureus subsp.
           aureus C101]
 gi|282317162|gb|EFB47536.1| MiaB-like tRNA modifying enzyme [Staphylococcus aureus subsp.
           aureus C427]
 gi|282321564|gb|EFB51889.1| Fe-S oxidoreductase [Staphylococcus aureus subsp. aureus M899]
 gi|282324909|gb|EFB55219.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           subsp. aureus WBG10049]
 gi|282331277|gb|EFB60791.1| MiaB tRNA modifying enzyme [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282595776|gb|EFC00740.1| Fe-S oxidoreductase [Staphylococcus aureus subsp. aureus C160]
 gi|290920282|gb|EFD97348.1| Fe-S oxidoreductase [Staphylococcus aureus subsp. aureus M1015]
 gi|291095123|gb|EFE25388.1| MiaB tRNA modifying enzyme [Staphylococcus aureus subsp. aureus
           58-424]
 gi|291466838|gb|EFF09358.1| MiaB-like tRNA modifying enzyme [Staphylococcus aureus subsp.
           aureus M809]
 gi|295128512|gb|EFG58146.1| MiaB-like tRNA modifying enzyme [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|297575766|gb|EFH94482.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           subsp. aureus MN8]
 gi|312437955|gb|ADQ77026.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           subsp. aureus TCH60]
 gi|315195479|gb|EFU25866.1| hypothetical protein CGSSa00_07410 [Staphylococcus aureus subsp.
           aureus CGS00]
          Length = 448

 Score =  402 bits (1034), Expect = e-110,   Method: Composition-based stats.
 Identities = 139/436 (31%), Positives = 231/436 (52%), Gaps = 17/436 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
                + GC++N Y++  +  +F    YERV+   +AD+ V+NTC +     +K    + 
Sbjct: 3   TVAFHTLGCKVNHYETEAIWQLFKEANYERVDFEANADVFVINTCTVTNTGDKKSRQIIR 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R        I++  D ++ V GC AQ    EI+   P V+VVVG Q  ++L   ++  R 
Sbjct: 63  RA-------IRQNPDAVICVTGCYAQTSSAEIM-EIPGVDVVVGTQDRHKLLGYIDEFRK 114

Query: 146 GKRVVDT--DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            ++ ++   +     K+E L +            A L IQEGC+ FCTFC++P+ RG+  
Sbjct: 115 ERQPINGVGNIMKNRKYEELDVP----YFTDRTRASLKIQEGCNNFCTFCIIPWARGLMR 170

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR   +VV++A +L+++G  EI L G +     G G D +    + LL  L  I GL R+
Sbjct: 171 SRDPEKVVEQATQLVNSGYKEIVLTGIHTG---GYGQDLKDYNLAQLLRDLETINGLERI 227

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R ++     ++D +I        ++ +LH+P+QSGSD +LK M R++T   + + + ++ 
Sbjct: 228 RISSIEASQLTDEVIDVLERSTKVVRHLHIPLQSGSDTVLKRMRRKYTMDRFSERLTKLH 287

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              PD+A++SD IVGFPGET+++F+ T D + K  +++   F YSPR+GTP + M +Q+D
Sbjct: 288 KALPDLAVTSDVIVGFPGETEEEFQETYDFIVKHKFSELHVFPYSPRIGTPAARMDDQID 347

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
           E +K ER+  L     +    +       ++EV+ E+ G  +G LVG +     V     
Sbjct: 348 EEIKNERVHKLITLSNQLGKLYASKFDQDVLEVIPEEQGDTEGTLVGYADNYMKVQFEGD 407

Query: 444 NHNIGDIIKVRITDVK 459
              IG I+KV+IT   
Sbjct: 408 ESLIGQIVKVKITQAN 423


>gi|315658148|ref|ZP_07911020.1| Fe-S oxidoreductase [Staphylococcus lugdunensis M23590]
 gi|315496477|gb|EFU84800.1| Fe-S oxidoreductase [Staphylococcus lugdunensis M23590]
          Length = 451

 Score =  402 bits (1033), Expect = e-110,   Method: Composition-based stats.
 Identities = 137/445 (30%), Positives = 228/445 (51%), Gaps = 17/445 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
                + GC++N Y++  +  +F    YERV+   +AD+ V+NTC +     +K    + 
Sbjct: 6   TVAFHTLGCKVNHYETEAIWQLFKEANYERVDFETNADVYVINTCTVTNTGDKKSRQVIR 65

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R        I++  D ++ V GC AQ    EI+   P V+VVVG Q  ++L   ++  + 
Sbjct: 66  RA-------IRKNPDAVICVTGCYAQTSSAEIM-EIPGVDVVVGTQDRHKLLSYIDEFQK 117

Query: 146 GKRVVDT--DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            ++ ++   +      +E L +            A L IQEGC+ FCTFC++P+ RG+  
Sbjct: 118 ERQPINGVGNIMKNRTYEELDVP----YFTDRTRASLKIQEGCNNFCTFCIIPWARGLMR 173

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR   +VV++A  L++ G  EI L G +     G G D +    + LL  L  I  L R+
Sbjct: 174 SRDPKKVVEQATTLVNAGYKEIVLTGIHTG---GYGQDLKNYNLAQLLRDLETIDSLERI 230

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R ++     ++D +I      + ++ +LH+P+QSGSD +LK M R++T   + + + ++ 
Sbjct: 231 RISSIEASQLTDEVIDVIEKSNKVVRHLHIPLQSGSDSVLKRMRRKYTMEHFSERLSKLH 290

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              PD+A++SD IVGFPGETD++F+ T D + K  +++   F YS R+GTP + M  Q+D
Sbjct: 291 KALPDLAVTSDVIVGFPGETDEEFQETFDFIAKHKFSELHVFPYSSRIGTPAARMDNQID 350

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
           E+VK ER+  L     +    +       ++EV+ E+ G   G L G +     V  +  
Sbjct: 351 EDVKNERVHKLIALSDQLAKEYASKFEDDVLEVIPEEKGSFHGSLAGYADNYMKVQFDGD 410

Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468
              IG I+KV+I         GE +
Sbjct: 411 ESLIGQIVKVKIVHADYPLNKGEAL 435


>gi|315185787|gb|EFU19553.1| RNA modification enzyme, MiaB family [Spirochaeta thermophila DSM
           6578]
          Length = 448

 Score =  402 bits (1033), Expect = e-110,   Method: Composition-based stats.
 Identities = 157/448 (35%), Positives = 259/448 (57%), Gaps = 13/448 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + ++V++YGCQMN  +S  +       G+ R ++ ++AD++VLNTC +R+ A E++   L
Sbjct: 2   RTYWVETYGCQMNKAESEALIRDLEEAGWGRASAPEEADVVVLNTCTVRQTAEERIAGRL 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-ERA 143
           G  R LK       G  ++V+ GC+A+   EE+L   P V+VVVG         LL ERA
Sbjct: 62  GYYRYLKK-----HGRFILVLMGCMAERMKEEVLEAFPHVDVVVGTFQKNSFVRLLRERA 116

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
                +     + ED++    +   G     G  AF+ I  GC+ FC++C+VPY RG EI
Sbjct: 117 EDLTLLQQLLLTEEDEYSFEKLHHSGL----GFKAFVPIMHGCNNFCSYCIVPYVRGREI 172

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKGLVR 262
           SR  S++ +E   L++ GV EITLLGQNVN+      +G++  F+ LL  +      L  
Sbjct: 173 SRRPSEIFEEIEALLEKGVREITLLGQNVNS-YRFTWEGKEMRFAGLLREIVHRFPELPW 231

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LR+ TSHP+D+S+ LI+       +  +LHLPVQ GS+RIL +MNRR+T   Y  +++RI
Sbjct: 232 LRFLTSHPKDLSEELIEVMSASSSICKHLHLPVQHGSNRILGAMNRRYTREHYLNLVERI 291

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+  P IA+++D +VGFPGET++D   T+DL+ ++ +A A+++ Y+PR GT      + +
Sbjct: 292 RTAMPGIALTTDILVGFPGETEEDLELTLDLMRRVRFADAYTYYYNPRKGTRAYEWGDPI 351

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLN 441
              VK ERL  + +  RE  + +    +G++++VL+E+   K + +++ R+   + VV  
Sbjct: 352 PLEVKKERLGRVIRLQRELSLEWKQRKIGRMVDVLVEEVSRKREDEVLARTEQDEMVVFP 411

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELVV 469
           +    IG    V++  ++ +T   + V+
Sbjct: 412 APPERIGRFAHVQLVSLEGNTFRAKEVI 439


>gi|254994852|ref|ZP_05277042.1| hypothetical protein AmarM_01756 [Anaplasma marginale str.
           Mississippi]
          Length = 463

 Score =  402 bits (1033), Expect = e-110,   Method: Composition-based stats.
 Identities = 213/450 (47%), Positives = 293/450 (65%), Gaps = 17/450 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + +  +++SYGCQMNVYDSL +ED+    G+  V   +DAD+I++NTCH+REKAAEK+YS
Sbjct: 1   MTKGLYIESYGCQMNVYDSLMVEDILRPLGFAAVQRPEDADIIMVNTCHVREKAAEKLYS 60

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            LGR+R L+          L+VVAGCVAQAEGE +  R+P V+VVVGPQ+ + LPEL+ +
Sbjct: 61  ALGRMRMLRKE------GALIVVAGCVAQAEGEAVFERAPFVDVVVGPQSIHTLPELIMK 114

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           A    + ++ ++    KF+   ++       RGV+AF+++QEGCDKFCTFCVVPYTRG E
Sbjct: 115 ATRDAKQMNVEFPAISKFD---VISTDLLVSRGVSAFVSVQEGCDKFCTFCVVPYTRGPE 171

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SRS+  V+ E RKL D G  E+ LLGQNVNA+ G    G +     L+  ++E++G+ R
Sbjct: 172 YSRSVEDVLAEVRKLADGGTKEVVLLGQNVNAYHG-TYKGNEWDLGRLIRKVAEVEGIER 230

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +RYTTSHPRDM   L  AH     L+P +HLPVQSGSD +L+ MNR+H+  EY  IID +
Sbjct: 231 IRYTTSHPRDMHSSLYDAHKHEPKLLPCVHLPVQSGSDSVLRKMNRKHSVQEYMDIIDTL 290

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           +  R DIA+SSDFIVGFPGET++DF ATMDLV  +G+A ++SFKYSPR GTPG+    QV
Sbjct: 291 KEARSDIALSSDFIVGFPGETEEDFEATMDLVRHVGFATSYSFKYSPRPGTPGAEYTNQV 350

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI---EKHGKEKGKLVGRSPWLQSVV 439
            E  K+ RL  LQ  L  QQ  F  + +G+ + VL+   E       ++ G+S  +Q V 
Sbjct: 351 PEEEKSSRLHRLQHLLLTQQRLFTKSMIGKTVSVLVCGTEGSRSCSNEVFGKSEHMQPVY 410

Query: 440 LNSKNHNIG---DIIKVRI-TDVKISTLYG 465
           ++      G    I  V++  +   S+L G
Sbjct: 411 ISVDGDPAGYRNKIFSVKVLEEGARSSLKG 440


>gi|229062008|ref|ZP_04199334.1| hypothetical protein bcere0026_40810 [Bacillus cereus AH603]
 gi|228717317|gb|EEL68990.1| hypothetical protein bcere0026_40810 [Bacillus cereus AH603]
          Length = 450

 Score =  402 bits (1033), Expect = e-110,   Method: Composition-based stats.
 Identities = 134/449 (29%), Positives = 237/449 (52%), Gaps = 21/449 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
                + GC++N Y++  +  +F   GYER      +D+ V+NTC +     +K    + 
Sbjct: 3   TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKSDVYVINTCTVTNTGDKKSRQVIR 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R        +++  D ++ V GC AQ    EI+   P V++VVG Q   ++   +E  R 
Sbjct: 63  RA-------VRQNPDAVICVTGCYAQTSPAEIMA-IPGVDIVVGTQDREKMLGYIEEFRK 114

Query: 146 GKRVVDTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            ++ ++   ++     +E L +            A L IQEGC+ FCTFC++P+ RG+  
Sbjct: 115 ERQPINAVRNIMKTRVYEELDVP----YFTDRTRASLKIQEGCNNFCTFCIIPWARGLMR 170

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKGLVR 262
           SR   +V+ +A++L+D G  EI L G +     G G D ++   + LL  + +E+ GL R
Sbjct: 171 SRDGKEVIKQAQQLVDAGYKEIVLTGIHTG---GYGEDIKEYNLAGLLRDMEAEVGGLKR 227

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LR ++     +SD +I+     +V++ +LH+P+QSGS+ +LK M R++T   +++ +DR+
Sbjct: 228 LRISSIEASQISDEVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRL 287

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           +   P +AI+SD IVGFPGET+++F  T + + +  +++   F YS R GTP + M +QV
Sbjct: 288 KEALPGLAITSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQV 347

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK---HGKEKGKLVGRSPWLQSVV 439
            E+VK +R+  L +   +    +     G+++E++ E+    G  +G  VG +     +V
Sbjct: 348 PEDVKNDRVHRLIELSNQLAKEYASKFEGEVLEIIPEETFKDGDREGLYVGYTDNYLKIV 407

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG ++KV+IT         + V
Sbjct: 408 FEGSEELIGKLVKVKITKAGYPYNEAQFV 436


>gi|255100347|ref|ZP_05329324.1| radical SAM-superfamily protein [Clostridium difficile QCD-63q42]
 gi|255306284|ref|ZP_05350455.1| radical SAM-superfamily protein [Clostridium difficile ATCC 43255]
          Length = 444

 Score =  402 bits (1033), Expect = e-110,   Method: Composition-based stats.
 Identities = 135/448 (30%), Positives = 229/448 (51%), Gaps = 15/448 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +  ++S GC  N+ D+  M  +  ++GY+ +   ++AD+I++NTC   E A ++    + 
Sbjct: 3   KIALESLGCSKNLVDAEIMMGILNNKGYKLIGDFEEADVIIVNTCGFIESAKQESIDTII 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
               LK    K G   L++V GC+AQ   EE+    P ++ +VG  +Y  + ++L+    
Sbjct: 63  NFAELK----KTGNLKLLIVTGCLAQRYSEELKTEIPEIDAIVGTGSYQNIDKILKELSE 118

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
             ++V  +       E L      Y       A+L I EGC   CT+C++P  RG   SR
Sbjct: 119 MHQIVSLNDIEFVFNEDLP----RYISTPSYMAYLKIGEGCSNNCTYCIIPKLRGKYRSR 174

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
               ++ EA+KL ++GV E+ ++ Q+     G  L G K   S+LL  L++I G   +R 
Sbjct: 175 KFEDIIKEAKKLAESGVKELVVIAQDTT-KYGFDLYG-KERLSELLEELAKIDGFKWIRV 232

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
             S+P  +++ LI+     D +  Y  +P+Q  S+ ILK MNR+ T  +    I+ IRS 
Sbjct: 233 MYSYPESITEELIQVIKKYDNICSYFDMPIQHASNNILKLMNRKTTKEDILNKINLIRSN 292

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            PD  + +  IVGFPGET+DDF+  +D V+++ + +  +F YS    TP   +   +DE 
Sbjct: 293 IPDAILRTTIIVGFPGETEDDFKQLVDFVEEVKFDRLGAFAYSREEDTPADRLPNHIDEE 352

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK---GKLVGRSPWLQSVVLNS 442
           VK +R   L    ++     ND  +G+  EVLIE+  ++    G+  G +  + S+V   
Sbjct: 353 VKIQRRDTLMMIQQKISEELNDKKIGKTYEVLIEEQIEDNVYTGRTQGDAEEIDSIVYVK 412

Query: 443 --KNHNIGDIIKVRITDVKISTLYGELV 468
              N  +G+ + V+I D     L G+++
Sbjct: 413 SVDNLEVGEFVSVQINDAMEYDLMGDVL 440


>gi|163942066|ref|YP_001646950.1| RNA modification protein [Bacillus weihenstephanensis KBAB4]
 gi|229013530|ref|ZP_04170664.1| hypothetical protein bmyco0001_39400 [Bacillus mycoides DSM 2048]
 gi|229169058|ref|ZP_04296774.1| hypothetical protein bcere0007_40100 [Bacillus cereus AH621]
 gi|163864263|gb|ABY45322.1| RNA modification enzyme, MiaB family [Bacillus weihenstephanensis
           KBAB4]
 gi|228614467|gb|EEK71576.1| hypothetical protein bcere0007_40100 [Bacillus cereus AH621]
 gi|228747767|gb|EEL97636.1| hypothetical protein bmyco0001_39400 [Bacillus mycoides DSM 2048]
          Length = 450

 Score =  402 bits (1033), Expect = e-110,   Method: Composition-based stats.
 Identities = 134/449 (29%), Positives = 237/449 (52%), Gaps = 21/449 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
                + GC++N Y++  +  +F   GYER      +D+ V+NTC +     +K    + 
Sbjct: 3   TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKSDVYVINTCTVTNTGDKKSRQVIR 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R        +++  D ++ V GC AQ    EI+   P V++VVG Q   ++   +E  R 
Sbjct: 63  RA-------VRQNPDAVICVTGCYAQTSPAEIMA-IPGVDIVVGTQDREKMLGYIEEFRK 114

Query: 146 GKRVVDTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            ++ ++   ++     +E L +            A L IQEGC+ FCTFC++P+ RG+  
Sbjct: 115 ERQPINAVRNIMKTRVYEELDVP----YFTDRTRASLKIQEGCNNFCTFCIIPWARGLMR 170

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKGLVR 262
           SR   +V+ +A++L+D G  EI L G +     G G D ++   + LL  + +E+ GL R
Sbjct: 171 SRDGKEVIKQAQQLVDAGYKEIVLTGIHTG---GYGEDIKEYNLAGLLRDMEAEVGGLKR 227

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LR ++     +SD +I+     +V++ +LH+P+QSGS+ +LK M R++T   +++ +DR+
Sbjct: 228 LRISSIEASQISDEVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRL 287

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           +   P +AI+SD IVGFPGET+++F  T + + +  +++   F YS R GTP + M +QV
Sbjct: 288 KEALPGLAITSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQV 347

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK---HGKEKGKLVGRSPWLQSVV 439
            E+VK +R+  L +   +    +     G+++E++ E+    G  +G  VG +     +V
Sbjct: 348 PEDVKNDRVHRLIELSNQLAKEYASRFEGEVLEIIPEETFKDGDREGLYVGYTDNYLKIV 407

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG ++KV+IT         + V
Sbjct: 408 FEGSEELIGKLVKVKITKAGYPYNEAQFV 436


>gi|327450799|gb|EGE97453.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes
           HL087PA3]
 gi|328754218|gb|EGF67834.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes
           HL087PA1]
          Length = 494

 Score =  402 bits (1033), Expect = e-110,   Method: Composition-based stats.
 Identities = 161/466 (34%), Positives = 257/466 (55%), Gaps = 24/466 (5%)

Query: 13  MVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYE---RVNSMDDADLIVLNT 69
           M +  +     P  + V +YGCQMNV+DS R+  +    GY    R +++  AD++V NT
Sbjct: 1   MPNNTLQHTEAP-TYRVVTYGCQMNVHDSERIAGLLEEAGYVPDPRTDTLAPADVVVFNT 59

Query: 70  CHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG 129
           C +RE A  ++Y  LG +  +K++       + + V GC+AQ + + ++ R+P V+VV G
Sbjct: 60  CAVRENADNRLYGTLGHMAAVKSAH----PGMQLAVGGCMAQKDKDTVVARAPWVDVVFG 115

Query: 130 PQTYYRLPELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
                 LP LL+RAR      V+ + S+      L        R    +A+++I  GC+ 
Sbjct: 116 THNVGSLPVLLKRARHNATAQVEIEESLVTFPSNLP-----ARRDSAYSAWVSISVGCNN 170

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS 248
            CTFC+VP  RG E  R   +++ E R L++ GV EITLLGQNVN++  +   G++  F+
Sbjct: 171 TCTFCIVPQLRGKETDRRPGEILSEIRALVNEGVQEITLLGQNVNSYGVQF--GDRGAFA 228

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
            LL +   I GL R+R+T+ HP   +D +I+A  +   +MP LH+P+QSGSD +L+ M R
Sbjct: 229 KLLRACGNIDGLERVRFTSPHPAAFTDDVIEAMAETPNVMPSLHMPLQSGSDEVLRRMRR 288

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
            + + ++  I+DR+R   P  AI++D IVGFPGETD DF  TM +V++  ++ AF+F+YS
Sbjct: 289 SYRSTKFLGILDRVREAIPHAAITTDIIVGFPGETDKDFAETMRIVEESRFSAAFTFQYS 348

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKG- 426
            R  T    M +QV + V  ER   L + + +     N A VG+ +EV+  +  G++   
Sbjct: 349 IRPNTSAGVMKDQVPKPVVQERYEQLVELVDDIAWQENKAQVGRAVEVMFAQGEGRKDEA 408

Query: 427 --KLVGRSPWLQSVVL---NSKN-HNIGDIIKVRITDVKISTLYGE 466
             ++ GR+   + V +      +    GDI +V IT      L  +
Sbjct: 409 THRVTGRARDNRLVHVSLNPGDDVPRPGDIGEVVITSGHPHHLVAD 454


>gi|229098781|ref|ZP_04229719.1| hypothetical protein bcere0020_40070 [Bacillus cereus Rock3-29]
 gi|228684625|gb|EEL38565.1| hypothetical protein bcere0020_40070 [Bacillus cereus Rock3-29]
          Length = 450

 Score =  402 bits (1033), Expect = e-110,   Method: Composition-based stats.
 Identities = 134/449 (29%), Positives = 236/449 (52%), Gaps = 21/449 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
                + GC++N Y++  +  +F   GYER      +D+ V+NTC +     +K    + 
Sbjct: 3   TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKSDVYVINTCTVTNTGDKKSRQVIR 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R        +++  D ++ V GC AQ    EI+   P V++VVG Q   ++   +E  R 
Sbjct: 63  RA-------VRQNPDAVICVTGCYAQTSPAEIMA-IPGVDIVVGTQDREKMLGYIEEFRK 114

Query: 146 GKRVVDTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            ++ ++   ++     +E L +            A L IQEGC+ FCTFC++P+ RG+  
Sbjct: 115 ERQPINAVRNIMKTRVYEELDVP----YFTDRTRASLKIQEGCNNFCTFCIIPWARGLMR 170

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKGLVR 262
           SR   +V+ +A++L+D G  EI L G +     G G D +    + LL  + +E+ GL R
Sbjct: 171 SRDGKEVIKQAQQLVDAGYKEIVLTGIHTG---GYGEDIKDYNLAGLLRDMEAEVGGLKR 227

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LR ++     +SD +I+     +V++ +LH+P+QSGS+ +LK M R++T   +++ +DR+
Sbjct: 228 LRISSIEASQISDEVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRL 287

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           +   P +AI+SD IVGFPGET+++F  T + + +  +++   F YS R GTP + M +QV
Sbjct: 288 KEALPGLAITSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQV 347

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK---HGKEKGKLVGRSPWLQSVV 439
            E+VK +R+  L +   +    +     G+++E++ E+    G  +G  VG +     +V
Sbjct: 348 PEDVKNDRVHRLIELSNQLAKEYASRFEGEVLEIIPEEQFKDGDREGLYVGYTDNYLKIV 407

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG ++KV+IT         + V
Sbjct: 408 FEGSEELIGKLVKVKITKAGYPYNEAQFV 436


>gi|213691832|ref|YP_002322418.1| RNA modification enzyme, MiaB family [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|229890433|sp|B7GQG0|MIAB_BIFLI RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|213523293|gb|ACJ52040.1| RNA modification enzyme, MiaB family [Bifidobacterium longum subsp.
           infantis ATCC 15697]
          Length = 484

 Score =  402 bits (1033), Expect = e-110,   Method: Composition-based stats.
 Identities = 161/454 (35%), Positives = 246/454 (54%), Gaps = 25/454 (5%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVN----SMDDADLIVLNTCHIREKAAEKVYS 82
           F + + GCQMNV+DS R+  +  + GY        + +D DL+VLNTC +RE AAE++Y 
Sbjct: 31  FHIHTLGCQMNVHDSERIAGVLEANGYVPATEDQINDNDLDLLVLNTCAVRENAAERMYG 90

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +GR   +K        +L + V GC+AQ + ++I   +P V+ V G +    LP+LL++
Sbjct: 91  TIGRFNRVKL----VRPNLQIAVGGCMAQLDRKKIADTAPWVSAVFGTKNIEDLPKLLDQ 146

Query: 143 ARF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
            R  GK  V     +     +L        R   +++++ I  GC+  CTFC+VP TRG 
Sbjct: 147 NRATGKAQVQVTEQLRQFPSQLPAA-----RASRISSWVAISVGCNNTCTFCIVPTTRGK 201

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E  R    ++DE R+ +  G  E+TLLGQNVN++ G G+ G++  FS LL +   I GL 
Sbjct: 202 EKDRRPGDILDEIRQCVAGGAKEVTLLGQNVNSF-GYGI-GDRYAFSKLLRACGTIDGLE 259

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+T+ HP   +D +I A  +   +M  LH P+QSGSDRIL++M R + + ++  I+ R
Sbjct: 260 RVRFTSPHPAAFTDDVIAAMAETPNIMHQLHFPLQSGSDRILRAMRRSYRSAKFLDILGR 319

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           IR   PD  IS+D IVGFPGET++DF+ TMD+V +  ++ AF+F YSPR GTP + M EQ
Sbjct: 320 IREAMPDAQISTDIIVGFPGETEEDFQQTMDVVRQARFSSAFTFIYSPRPGTPAAAM-EQ 378

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK----HGKEKGKLVGRSPWLQS 437
           +  +V  +R   L     +          G+ +EV+I         +  ++ GR      
Sbjct: 379 IPRDVVQDRFDRLVALQEQITEENLATFEGRDVEVMITGKLGKKDTDTHRVTGREKTGVL 438

Query: 438 VVLNSKN----HNIGDIIKVRITDVKISTLYGEL 467
           V +          IGD + V +T      L  + 
Sbjct: 439 VHIGVPEGEPVPEIGDFVTVTVTHAGRHNLLADP 472


>gi|56416641|ref|YP_153715.1| hypothetical protein AM401 [Anaplasma marginale str. St. Maries]
 gi|81599177|sp|Q5PB69|MIAB_ANAMM RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|56387873|gb|AAV86460.1| hypothetical protein AM401 [Anaplasma marginale str. St. Maries]
          Length = 455

 Score =  402 bits (1033), Expect = e-110,   Method: Composition-based stats.
 Identities = 213/450 (47%), Positives = 293/450 (65%), Gaps = 17/450 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + +  +++SYGCQMNVYDSL +ED+    G+  V   +DAD+I++NTCH+REKAAEK+YS
Sbjct: 1   MTKGLYIESYGCQMNVYDSLMVEDILRPLGFAAVQRPEDADIIMVNTCHVREKAAEKLYS 60

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            LGR+R L+          L+VVAGCVAQAEGE +  R+P V+VVVGPQ+ + LPEL+ +
Sbjct: 61  ALGRMRMLRKE------GALIVVAGCVAQAEGEAVFERAPFVDVVVGPQSIHTLPELIMK 114

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           A    + ++ ++    KF+   ++       RGV+AF+++QEGCDKFCTFCVVPYTRG E
Sbjct: 115 ATRDAKQMNVEFPAISKFD---VISTDLLVSRGVSAFVSVQEGCDKFCTFCVVPYTRGPE 171

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SRS+  V+ E RKL D G  E+ LLGQNVNA+ G    G +     L+  ++E++G+ R
Sbjct: 172 YSRSVEDVLAEVRKLADGGTKEVVLLGQNVNAYHG-TYKGNEWDLGRLIRKVAEVEGIER 230

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +RYTTSHPRDM   L  AH     L+P +HLPVQSGSD +L+ MNR+H+  EY  IID +
Sbjct: 231 IRYTTSHPRDMHSSLYDAHKHEPKLLPCVHLPVQSGSDSVLRKMNRKHSVQEYMDIIDTL 290

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           +  R DIA+SSDFIVGFPGET++DF ATMDLV  +G+A ++SFKYSPR GTPG+    QV
Sbjct: 291 KEARSDIALSSDFIVGFPGETEEDFEATMDLVRHVGFATSYSFKYSPRPGTPGAEYTNQV 350

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI---EKHGKEKGKLVGRSPWLQSVV 439
            E  K+ RL  LQ  L  QQ  F  + +G+ + VL+   E       ++ G+S  +Q V 
Sbjct: 351 PEEEKSSRLHRLQHLLLTQQRLFTKSMIGKTVSVLVCGTEGSRSCSNEVFGKSEHMQPVY 410

Query: 440 LNSKNHNIG---DIIKVRI-TDVKISTLYG 465
           ++      G    I  V++  +   S+L G
Sbjct: 411 ISVDGDPAGYRNKIFSVKVLEEGARSSLKG 440


>gi|222475005|ref|YP_002563420.1| 2-methylthioadenine synthetase (miaB) [Anaplasma marginale str.
           Florida]
 gi|222419141|gb|ACM49164.1| 2-methylthioadenine synthetase (miaB) [Anaplasma marginale str.
           Florida]
          Length = 454

 Score =  402 bits (1033), Expect = e-110,   Method: Composition-based stats.
 Identities = 212/450 (47%), Positives = 292/450 (64%), Gaps = 17/450 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + +  +++SYGCQMNVYDSL +ED+    G+  V   +DAD+I++NTCH+REKAAEK+YS
Sbjct: 1   MTKGLYIESYGCQMNVYDSLMVEDILRPLGFAAVQRPEDADIIMVNTCHVREKAAEKLYS 60

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            LGR+R L+          L+VVAGCVAQAEGE +  R+P V+VVVGPQ+ + LPEL+ +
Sbjct: 61  ALGRMRMLRKE------GALIVVAGCVAQAEGEAVFERAPFVDVVVGPQSIHTLPELIMK 114

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           A    + ++ ++    KF+   ++       RGV+AF+++QEGCDKFCTFCVVPYTRG E
Sbjct: 115 ATRDAKQMNVEFPAISKFD---VISTDLLVSRGVSAFVSVQEGCDKFCTFCVVPYTRGPE 171

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SRS+  V+ E RKL D G  E+ LLGQNVNA+ G    G +     L+  ++E+ G+ R
Sbjct: 172 YSRSVEDVLAEVRKLADGGTKEVVLLGQNVNAYHG-TYKGNEWDLGRLIRKVAEVDGIER 230

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +RYTTSHP+DM   L  AH     L+P +HLPVQSGSD +L+ MNR+H+  EY  IID +
Sbjct: 231 IRYTTSHPKDMHSSLYDAHKHEPKLLPCVHLPVQSGSDSVLRKMNRKHSVQEYMDIIDTL 290

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           +  R DIA+SSDFIVGFPGET++DF ATMDLV  +G+A ++SFKYSPR GTPG+    QV
Sbjct: 291 KEARSDIALSSDFIVGFPGETEEDFEATMDLVRHVGFATSYSFKYSPRPGTPGAEYTNQV 350

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI---EKHGKEKGKLVGRSPWLQSVV 439
            E  K+ RL  LQ  L  QQ  F  + +G+ + VL+   E       ++ G+S  +Q V 
Sbjct: 351 PEEEKSSRLHRLQHLLLTQQRLFTKSMIGKTVSVLVCGTEGSRSCSNEVFGKSEHMQPVY 410

Query: 440 LNSKNHNIG---DIIKVRI-TDVKISTLYG 465
           ++      G    I  V++  +   S+L G
Sbjct: 411 ISVDGDPAGYRNKIFSVKVLEEGARSSLKG 440


>gi|145219118|ref|YP_001129827.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Prosthecochloris
           vibrioformis DSM 265]
 gi|229890605|sp|A4SCW6|MIAB_PROVI RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|145205282|gb|ABP36325.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Chlorobium
           phaeovibrioides DSM 265]
          Length = 448

 Score =  402 bits (1033), Expect = e-110,   Method: Composition-based stats.
 Identities = 160/443 (36%), Positives = 245/443 (55%), Gaps = 14/443 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + F++ ++GCQMN  DS  +  +    G+    S +DAD+++LNTC +RE A E++   L
Sbjct: 7   RSFYIHTFGCQMNQADSAIITAILMDGGFRVAGSQEDADIVILNTCAVRENAVERITHQL 66

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             +R  K    +    LLV VAGCV Q    E+L   P+++ + GP TY  LP L+  A 
Sbjct: 67  QFLRGAK----RRKKSLLVGVAGCVPQHLKREMLEMFPVIDFLAGPDTYRNLPALIGDAE 122

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            GKR    ++ +E+ +  +  +     R+ GV AF+ +  GC+  C FCVVP+TRG E S
Sbjct: 123 EGKRPAALEFRIEETYAGIDPL-----REVGVGAFVPVTRGCNNMCAFCVVPFTRGRERS 177

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           +  S V+DE R++++ G  EITLLGQNVN++       E   F+ LL ++S      R+R
Sbjct: 178 QPFSAVMDEVRRVVEKGYGEITLLGQNVNSYADPE---EGRDFASLLRAVSREAPGCRIR 234

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +TTSHP+D+S  L+ A  D   +  ++HLPVQSGS R+L  MNR H   EY + +  +R 
Sbjct: 235 FTTSHPKDISPDLVDAIADSPNICNHVHLPVQSGSSRMLHRMNRGHGIDEYLETVALLRR 294

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN-MLEQVD 383
             P +++++D I GF GE D+D  AT+ L+ ++ Y  AF F YSPR GT     + + V 
Sbjct: 295 RIPGVSLTTDLIAGFCGEEDEDHEATLALLREVRYDNAFMFYYSPRFGTAAWKTLADTVP 354

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNS 442
             VK +RL  +               VG +++VL E   +    +L+GR+   ++VV + 
Sbjct: 355 LAVKKQRLQEIIDLQLSISAECLQEAVGSVVDVLAESESRRSTEQLMGRTGTNRAVVFDR 414

Query: 443 KNHNIGDIIKVRITDVKISTLYG 465
                GD + V I+    +TL G
Sbjct: 415 GGARPGDRVSVLISKASSATLTG 437


>gi|332704873|ref|ZP_08424961.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Desulfovibrio africanus str. Walvis Bay]
 gi|332555022|gb|EGJ52066.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Desulfovibrio africanus str. Walvis Bay]
          Length = 474

 Score =  402 bits (1033), Expect = e-110,   Method: Composition-based stats.
 Identities = 166/448 (37%), Positives = 253/448 (56%), Gaps = 16/448 (3%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           F + ++GCQMNV DS  +     S+G++     + AD+I++NTC +R+K  +KVYS LGR
Sbjct: 32  FHILTFGCQMNVGDSQWLSRALRSRGWQETTD-EQADVIIINTCSVRDKPEQKVYSLLGR 90

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           + ++            V V GCVAQ  G     R P V +V G      +P+ LER    
Sbjct: 91  LASIVRET-----GAFVAVGGCVAQQIGAGFWNRFPFVRLVFGTDGVAGVPQALERLAST 145

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
            R+  +     +  E +       +     +AF+TI +GC+ FC +C+VPY RG + SR+
Sbjct: 146 PRLRLSLLDFSE--EYVERGQDFPDASVSPSAFVTIMQGCNNFCAYCIVPYVRGRQKSRT 203

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
            + ++ E   LI  G  EITLLGQNVN+  G+   G+  +F+ LL  ++ + GL RLR+ 
Sbjct: 204 SASIISECESLIARGAREITLLGQNVNS-YGQDAGGDGLSFTQLLRRVAVLPGLARLRFV 262

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
           TSHP+D++  ++ A G+L+ L P LHLP+QSGSD +L  M R++    Y  I+ R+R  R
Sbjct: 263 TSHPKDIAPEVVAAFGELEQLCPCLHLPMQSGSDAVLARMGRKYDRARYLDIVRRLRQAR 322

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           P + +++D IVGFPGET+ DFRATMD+++++ + ++FSFKYS R G     M  +V E V
Sbjct: 323 PGMVLTTDIIVGFPGETEQDFRATMDVLEEVRFERSFSFKYSDRPGVAAERMAFKVPEEV 382

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK----LVGRSPWLQSV---V 439
           KAERL   Q +  E       A  G+ + VL+E+  K + +      GR P  + V   V
Sbjct: 383 KAERLASFQARQAELTAEDLRAQEGRRVSVLLEELSKRQDEGGLSWRGREPGGRVVDIPV 442

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGEL 467
           ++      G +  VRI+  +  +L GE+
Sbjct: 443 IDGGPDLTGALATVRISLARKHSLLGEM 470


>gi|289550653|ref|YP_003471557.1| MiaB family protein [Staphylococcus lugdunensis HKU09-01]
 gi|289180185|gb|ADC87430.1| MiaB family protein [Staphylococcus lugdunensis HKU09-01]
          Length = 448

 Score =  402 bits (1033), Expect = e-110,   Method: Composition-based stats.
 Identities = 138/445 (31%), Positives = 229/445 (51%), Gaps = 17/445 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
                + GC++N Y++  +  +F    YERV+   +AD+ V+NTC +     +K    + 
Sbjct: 3   TVAFHTLGCKVNHYETEAIWQLFKEANYERVDFETNADVYVINTCTVTNTGDKKSRQVIR 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R        I++  D ++ V GC AQ    EI+   P V+VVVG Q  ++L   ++  + 
Sbjct: 63  RA-------IRKNPDAVICVTGCYAQTSSAEIM-EIPGVDVVVGTQDRHKLLSYIDEFQK 114

Query: 146 GKRVVDT--DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            ++ ++   +      +E L +            A L IQEGC+ FCTFC++P+ RG+  
Sbjct: 115 ERQPINGVGNIMKNRTYEELDVP----YFTDRTRASLKIQEGCNNFCTFCIIPWARGLMR 170

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR   +VV++A  L++ G  EI L G +     G G D +    + LL  L  I GL R+
Sbjct: 171 SRDPKKVVEQATTLVNAGYKEIVLTGIHTG---GYGQDLKNYNLAQLLRDLETIDGLERI 227

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R ++     ++D +I      + ++ +LH+P+QSGSD +LK M R++T   + + + ++ 
Sbjct: 228 RISSIEASQLTDEVIDVIEKSNKVVRHLHIPLQSGSDSVLKRMRRKYTMEHFSERLSKLH 287

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
               D+A++SD IVGFPGETD++F+ T D + K  +++   F YS R+GTP + M  Q+D
Sbjct: 288 KALSDLAVTSDVIVGFPGETDEEFQETFDFIAKHKFSELHVFPYSSRIGTPAARMDNQID 347

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
           E+VK ER+  L     +    +       ++EV+ E+ G   G LVG +     V  +  
Sbjct: 348 EDVKNERVHKLIALSDQLAKEYASKFEDDVLEVIPEEKGSFHGSLVGYADNYMKVQFDGD 407

Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468
              IG I+KV+I         GE +
Sbjct: 408 ESLIGQIVKVKIVHADYPLNKGEAL 432


>gi|26554249|ref|NP_758183.1| hypothetical protein MYPE7940 [Mycoplasma penetrans HF-2]
 gi|81747516|sp|Q8EUX4|MIAB_MYCPE RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|26454258|dbj|BAC44587.1| conserved hypothetical protein [Mycoplasma penetrans HF-2]
          Length = 491

 Score =  402 bits (1033), Expect = e-110,   Method: Composition-based stats.
 Identities = 149/447 (33%), Positives = 251/447 (56%), Gaps = 13/447 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + + +K++GCQ N+ D+  M  M    GYE    ++ +DL++LNTC +RE A  KV++ +
Sbjct: 54  KTYHIKTFGCQSNLRDTEVMMGMLELIGYEYNEDVNTSDLVLLNTCAVREHAESKVFADI 113

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQ--AEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
           G +  +K    K   + +  V GC+AQ  A    IL+ +  V+ + G    +R+  LLE+
Sbjct: 114 GILDRIK----KSNPNFIFGVCGCMAQEEAVVNRILKSNFNVDFIFGTHNVHRILNLLEQ 169

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
             F K +V   +S E       I +    R   +  F+ +  GCDKFCT+C+VP TRG  
Sbjct: 170 VIFEKNLVVEVWSHEGNV----IENLPSKRTNNLKGFVNVMYGCDKFCTYCIVPMTRGKI 225

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR    ++DE  ++I  G  E+TL+GQNVN++     +GE   F++LL  +++  G+ R
Sbjct: 226 RSRRKEDILDEVHQMISEGYKEVTLIGQNVNSYGIDFDNGENYLFNNLLEDVAK-TGIER 284

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTS+P + +  ++        +MP++HLP+QSG + ILK MNR     +Y  ++D I
Sbjct: 285 VRFTTSNPWNFTRSIVDTMKKYPNIMPHIHLPIQSGDETILKKMNRPMKIGDYIDLVDYI 344

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+  P+ +I++D IVGFP ET + F  T++L  +I +  AF+F YS R GT  + + +++
Sbjct: 345 RANIPNCSITTDLIVGFPNETKEQFNKTLELYKRIEFDNAFTFIYSKRDGTVAAIIPDEI 404

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GRSPWLQSVVLN 441
             + K ERL  L + ++      N+  V ++++VL++   K+   ++ G SP  + V   
Sbjct: 405 PLSEKKERLQELNEMVKTFSKKNNEKYVNKVLDVLVDGPSKKDKTVISGYSPQWKVVNFT 464

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                 G+I+KV IT     TL G+++
Sbjct: 465 GS-AKSGEIVKVLITSASRFTLNGKMI 490


>gi|195443590|ref|XP_002069485.1| GK11551 [Drosophila willistoni]
 gi|194165570|gb|EDW80471.1| GK11551 [Drosophila willistoni]
          Length = 576

 Score =  402 bits (1033), Expect = e-110,   Method: Composition-based stats.
 Identities = 154/480 (32%), Positives = 244/480 (50%), Gaps = 39/480 (8%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++   + YGCQMN  D+  +  +    GY+R +  ++AD+I+L TC +R+ A +K+++ L
Sbjct: 88  RKVHFEVYGCQMNTNDTEVVWSILQENGYQRCHDQNEADVIMLVTCAVRDGAEQKIWNRL 147

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             +R LK  R    G L + + GC+A+   E +L +   V+V+ GP +Y  LP LL  +R
Sbjct: 148 RHLRALKEKRSSRRGPLQLTLLGCMAERLKERLLEQEKSVDVIAGPDSYKDLPRLLAVSR 207

Query: 145 F-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             G   ++   S+++ +  +  V          TAF++I  GCD  C++C+VP+TRG E 
Sbjct: 208 HYGNSAINVLLSLDETYADVMPVRLN---SESPTAFVSIMRGCDNMCSYCIVPFTRGRER 264

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT----------------- 246
           SR L  +V E   L + GV E+TLLGQNVN++R +    E  T                 
Sbjct: 265 SRPLESIVREVLTLQEQGVKEVTLLGQNVNSYRDRSGQDEDNTKDAPVPGFKTVYKPKSG 324

Query: 247 ---FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
              FS LL S++E    +R+R+T+ HP+D SD +++   D   +   LHLP QSG+ ++L
Sbjct: 325 GLPFSKLLESVAEAVPEMRIRFTSPHPKDFSDDVLRIIRDYPNVCKQLHLPAQSGNSQVL 384

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
             M R +T   Y ++++ IR + P + +SSDFI GF GETD++F  T+ L+ K+ Y  A+
Sbjct: 385 ARMRRGYTREAYLELVEHIRKILPHVGLSSDFICGFCGETDEEFEDTISLIQKVRYNVAY 444

Query: 364 SFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422
            F YS R  T      ++ V   VK +RL  + +  R      +   VGQ   +LIE   
Sbjct: 445 LFAYSMREKTTAHRRFVDDVPLAVKTQRLQRMVQAFRTGATQLHQEFVGQQQLILIEGRS 504

Query: 423 KEKG-KLVGRSPWLQSVVLNSKNHN-------------IGDIIKVRITDVKISTLYGELV 468
           K       GR+     V++ S                 +GD +  RI +     L G  +
Sbjct: 505 KRSALHWFGRNDANIKVIVPSMEVPVAGQDSSEMKSFGVGDFVVARIEESNSQVLKGTPL 564


>gi|153810776|ref|ZP_01963444.1| hypothetical protein RUMOBE_01160 [Ruminococcus obeum ATCC 29174]
 gi|149833172|gb|EDM88254.1| hypothetical protein RUMOBE_01160 [Ruminococcus obeum ATCC 29174]
          Length = 445

 Score =  402 bits (1033), Expect = e-110,   Method: Composition-based stats.
 Identities = 144/451 (31%), Positives = 221/451 (49%), Gaps = 22/451 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC  N+ DS  M  +    G+E V+S ++AD IV+NTC     A E+  + + 
Sbjct: 2   KILFISLGCDKNLADSEEMLGLLTGNGHEIVDSEEEADAIVINTCCFIHDAKEESVNTIL 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +   K    K G   +++V GC+AQ   EEI    P V+ V+G  +Y  + + L  A  
Sbjct: 62  EMAEYK----KTGPCKILIVTGCMAQRYKEEITEEIPEVDAVLGTTSYGDIVKALNEAEA 117

Query: 146 GK---RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           G       D +   ED   R+    G +        +L I EGCDK CT+C++P  RG  
Sbjct: 118 GHVFQEFKDINALPEDSGRRVITTGGHF-------GYLKIAEGCDKHCTYCIIPSLRGKF 170

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            S    +++ +A  +   GV E+ L+ Q      G  L G+K T   LL  L +IKG+  
Sbjct: 171 RSVPEERLLKQAEYMASQGVRELILVAQETT-VYGTDLYGKK-TLHILLKKLCQIKGIRW 228

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R    +P ++ D LI+   +   +  YL LP+Q  SDRILK M RR +  +   II ++
Sbjct: 229 IRVLYCYPEEIYDELIQVMKEEKKICHYLDLPIQHASDRILKRMGRRTSKAQLVGIITKL 288

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R   PDI + +  I GFPGET++D +  M+ VD++ + +   F YSP  GTP   M EQV
Sbjct: 289 RREIPDIVLRTSLITGFPGETEEDHQELMEFVDEMEFDRLGVFTYSPEEGTPAETMEEQV 348

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSV 438
            E +K ER   + +  +E  +   +  +GQ + V+IE     +   +GR+    P +   
Sbjct: 349 PEELKEERRDEIMELQQEISLEKGNDRIGQELLVMIEGKVSGESAYIGRTYGDAPKVDGY 408

Query: 439 VLNSKNHNI--GDIIKVRITDVKISTLYGEL 467
           +       +  GD  KV++T      L GEL
Sbjct: 409 MFVQTGELLVTGDFAKVKVTGAMEYDLIGEL 439


>gi|260587855|ref|ZP_05853768.1| RNA modification enzyme, MiaB family [Blautia hansenii DSM 20583]
 gi|260542120|gb|EEX22689.1| RNA modification enzyme, MiaB family [Blautia hansenii DSM 20583]
          Length = 446

 Score =  402 bits (1032), Expect = e-110,   Method: Composition-based stats.
 Identities = 136/449 (30%), Positives = 215/449 (47%), Gaps = 16/449 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++    S GC  N+ DS  M  M    GY   N   +A++IV+NTC     A E+  + +
Sbjct: 2   RKVLFISLGCDKNLADSEEMLGMLVENGYTLTNDETEAEIIVVNTCAFIHDAKEESINSI 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             +   K      G   +++V GC+AQ   EEI++  P V+ V+G  ++  + + L+   
Sbjct: 62  LEMARYKTE----GVLKVLLVTGCLAQRYKEEIIKEIPEVDAVLGTTSFGDIIKALDIVF 117

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G+R ++     +D      I         G   +L I EGCDK CT+C++P  RG   S
Sbjct: 118 EGERYLE----FKDINALTEISKKRVLTTGGYYGYLKIAEGCDKRCTYCIIPKLRGNYRS 173

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
             + Q++ +A  L   GV E+ L+ Q      GK + G+KC    LL  L +I G+  +R
Sbjct: 174 IPMEQLISQAEYLAGQGVRELILVAQETT-VYGKDIYGKKC-LHKLLKELCKIPGIQWIR 231

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
               +P ++   LI+   +   +  YL LP+Q  SD+ILK M RR T  E   I+  +R 
Sbjct: 232 ILYCYPEEIYPELIQTMKEEKKICHYLDLPIQHCSDKILKKMGRRTTKQELIDIVTLLRK 291

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             PDI + +  I GFPGET++D    M+ +D + + +   F YS    TP +NM  Q+ E
Sbjct: 292 EIPDIILRTTLITGFPGETEEDHEELMEFIDTMEFDRLGVFTYSAEEDTPAANMPNQIAE 351

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVL 440
            VK +R   L +  +E  +   +  +G  +EV+IE    ++   VGR+    P +   + 
Sbjct: 352 EVKQDRQAELMELQQEISIDKGNDKIGTCVEVMIEGKVADENAYVGRTYGDAPNVDGYIF 411

Query: 441 --NSKNHNIGDIIKVRITDVKISTLYGEL 467
                    GD  +V +T      L GEL
Sbjct: 412 INTDTELMSGDFARVHVTGALEYDLIGEL 440


>gi|126698925|ref|YP_001087822.1| radical SAM superfamily protein [Clostridium difficile 630]
 gi|123174606|sp|Q18BJ2|RIMO_CLOD6 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|115250362|emb|CAJ68184.1| Ribosomal protein S12 methylthiotransferase [Clostridium difficile]
          Length = 444

 Score =  402 bits (1032), Expect = e-110,   Method: Composition-based stats.
 Identities = 135/448 (30%), Positives = 229/448 (51%), Gaps = 15/448 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +  ++S GC  N+ D+  M  +  ++GY+ +   ++AD+I++NTC   E A ++    + 
Sbjct: 3   KIALESLGCSKNLVDAEIMMGILNNKGYKLIGDFEEADVIIVNTCGFIESAKQESIDTII 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
               LK    K G   L++V GC+AQ   EE+    P ++ +VG  +Y  + ++L+    
Sbjct: 63  NFAELK----KTGNLKLLIVTGCLAQRYSEELKTEIPEIDAIVGTGSYQNIDKILKELSE 118

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
             ++V  +       E L      Y       A+L I EGC   CT+C++P  RG   SR
Sbjct: 119 IHQIVSLNDIEFVFNEDLP----RYISTPSYMAYLKIGEGCSNNCTYCIIPKLRGKYRSR 174

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
               ++ EA+KL ++GV E+ ++ Q+     G  L G K   S+LL  L++I G   +R 
Sbjct: 175 KFEDIIKEAKKLAESGVKELVVIAQDTT-KYGFDLYG-KERLSELLEELAKIDGFKWIRV 232

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
             S+P  +++ LI+     D +  Y  +P+Q  S+ ILK MNR+ T  +    I+ IRS 
Sbjct: 233 MYSYPESITEELIQVIKKYDNICSYFDMPIQHASNNILKLMNRKTTKEDILNKINLIRSN 292

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            PD  + +  IVGFPGET+DDF+  +D V+++ + +  +F YS    TP   +   +DE 
Sbjct: 293 IPDAILRTTIIVGFPGETEDDFKQLVDFVEEVKFDRLGAFAYSREEDTPADRLPNHIDEE 352

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK---GKLVGRSPWLQSVVLNS 442
           VK +R   L    ++     ND  +G+  EVLIE+  ++    G+  G +  + S+V   
Sbjct: 353 VKIQRRDTLMMIQQKISEELNDKKIGKTYEVLIEEQIEDNVYTGRTQGDAEEIDSIVYVK 412

Query: 443 --KNHNIGDIIKVRITDVKISTLYGELV 468
              N  +G+ + V+I D     L G+++
Sbjct: 413 SVDNLEVGEFVSVQINDAMEYDLMGDVL 440


>gi|149184079|ref|ZP_01862427.1| hypothetical protein BSG1_17550 [Bacillus sp. SG-1]
 gi|148848213|gb|EDL62515.1| hypothetical protein BSG1_17550 [Bacillus sp. SG-1]
          Length = 445

 Score =  402 bits (1032), Expect = e-110,   Method: Composition-based stats.
 Identities = 135/451 (29%), Positives = 244/451 (54%), Gaps = 20/451 (4%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           +P      + GC++N Y++  +  +F  QGYER+   + AD+ V+NTC +     +K   
Sbjct: 4   MP-TVAFHTLGCKVNHYETEAIWQLFKEQGYERLEYENTADVYVINTCTVTNTGDKKSRQ 62

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            + R        I++  D ++ V GC AQ    EI+   P V++VVG Q   ++ E +E+
Sbjct: 63  VIRRA-------IRKNPDAVICVTGCYAQTSPAEIMA-IPGVDIVVGTQDRRKMLEYIEQ 114

Query: 143 ARFGKRVVDTDYSVEDKFERLSI-VDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
            +  ++ ++   ++        + V    +R R   A L IQEGC+ FCTFC++P+ RG+
Sbjct: 115 FKEERQPINGVGNIMKNRVYEELQVPAFTDRTR---ASLKIQEGCNNFCTFCIIPWARGL 171

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE-IKGL 260
             SR   +V+ +A++L+D G  EI L G +     G G D +    + LL  L E + GL
Sbjct: 172 MRSREPEEVIRQAQQLVDAGYKEIVLTGIHTG---GYGEDMKDYNLAMLLRDLEEKVDGL 228

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R ++     ++D +I+   +  +++ +LH+P+QSGS+ +LK M R++T   + + ++
Sbjct: 229 KRIRISSIEASQLTDEVIEVIDNSKLVVRHLHIPLQSGSNTVLKRMRRKYTMEFFAERLE 288

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           +++   P +A++SD IVGFPGET+++F+ T + + +  +++   F YS R GTP + M +
Sbjct: 289 KLKKALPGLAVTSDVIVGFPGETEEEFKETYNFIKEHKFSELHVFPYSKRTGTPAARMTD 348

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE---KGKLVGRSPWLQS 437
           Q+DE +K ER+  L +   +    +      +++EV+ E+  KE    G  VG +     
Sbjct: 349 QIDEEIKNERVHRLIELSNQLAKEYASQFEYEVLEVIPEEVYKEQPDSGLYVGYTDNYLK 408

Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           VV  +    +G ++KV++T        G+ V
Sbjct: 409 VVFPATEDMVGKLVKVKLTKAGYPFNEGQFV 439


>gi|91762485|ref|ZP_01264450.1| tRNA-i(6)A37 modification enzyme [Candidatus Pelagibacter ubique
           HTCC1002]
 gi|91718287|gb|EAS84937.1| tRNA-i(6)A37 modification enzyme [Candidatus Pelagibacter ubique
           HTCC1002]
          Length = 455

 Score =  402 bits (1032), Expect = e-110,   Method: Composition-based stats.
 Identities = 188/449 (41%), Positives = 288/449 (64%), Gaps = 8/449 (1%)

Query: 19  DQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAE 78
           +   + ++ F+K++GCQMN YDS R+ D     G+E+    +DA+  +LNTCHIR+KA E
Sbjct: 6   NPNTMLKKIFIKTFGCQMNEYDSNRIFDTVKKIGFEKTEKYEDANCYLLNTCHIRDKAKE 65

Query: 79  KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPE 138
           KVY  +GR++ +   + K     +V+VAGCVAQAE +E+L+R P +++V+GPQ+Y+++ E
Sbjct: 66  KVYHEIGRVKKIFREKKKP----IVIVAGCVAQAENQEMLKREPYIDIVIGPQSYHKINE 121

Query: 139 LLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
            +            + +  D   + + +    N+   V++FLTIQEGCDKFC FCVVPYT
Sbjct: 122 AILNHLK--NKKKEEETEFDTISKFNYLSQIKNKDSKVSSFLTIQEGCDKFCHFCVVPYT 179

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258
           RG E SR   Q+++EA++L+ +G  EI LLGQNVNA      +G++   SDLL  L    
Sbjct: 180 RGPEYSRPFDQIINEAKELVQSGAKEIILLGQNVNA-YSYDEEGKEYRLSDLLIKLDSFD 238

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
            L R+RYTTSHP+DM+D LI  +     LMP +HLPVQSGS++IL  MNR+HT  EY  +
Sbjct: 239 KLERIRYTTSHPKDMTDDLINVYKTSSKLMPLVHLPVQSGSNKILNLMNRKHTIEEYLLV 298

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
            +++R + P I  SSDFI+G+P E + DF+ TM+L++K+ +  ++SF +SPR GT  +N+
Sbjct: 299 YEKLRKINPKIEFSSDFIIGYPEEDEQDFKMTMELIEKVKFINSYSFIFSPRPGTVAANL 358

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSV 438
              VD+    +RL  +Q+KL   Q+  N +   +I+ VL+E   K+  KL GR+ ++ SV
Sbjct: 359 T-LVDQKKSKQRLEIIQEKLFNNQIKKNKSLENKILNVLVENKMKDGIKLFGRTEYMASV 417

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGEL 467
           + +    NIG +++V IT    ++L+G+L
Sbjct: 418 IFDGNIENIGKLVQVEITSSNQNSLFGKL 446


>gi|282916846|ref|ZP_06324604.1| MiaB-like tRNA modifying enzyme [Staphylococcus aureus subsp.
           aureus D139]
 gi|283770652|ref|ZP_06343544.1| 2-alkenal reductase [Staphylococcus aureus subsp. aureus H19]
 gi|282319333|gb|EFB49685.1| MiaB-like tRNA modifying enzyme [Staphylococcus aureus subsp.
           aureus D139]
 gi|283460799|gb|EFC07889.1| 2-alkenal reductase [Staphylococcus aureus subsp. aureus H19]
          Length = 448

 Score =  402 bits (1032), Expect = e-110,   Method: Composition-based stats.
 Identities = 139/436 (31%), Positives = 230/436 (52%), Gaps = 17/436 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
                + GC++N Y++  +  +F    YERV+   +AD+ V+NTC +     +K    + 
Sbjct: 3   TVAFHTLGCKVNHYETEAIWQLFKEANYERVDFEANADVFVINTCTVTNTGDKKSRQIIR 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R        I++  D ++ V GC AQ    EI+   P V+VVVG Q  ++L   ++  R 
Sbjct: 63  RA-------IRQNPDAVICVTGCYAQTSSAEIM-EIPGVDVVVGTQDRHKLLGYIDEFRK 114

Query: 146 GKRVVDT--DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            ++ ++   +     K+E L +            A L IQEGC+ FCTFC++P+ RG+  
Sbjct: 115 ERQPINGVGNIMKNRKYEELDVP----YFTDRTRASLKIQEGCNNFCTFCIIPWARGLMR 170

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR   +VV++A +L+++G  EI L G +     G G D +    + LL  L  I GL R+
Sbjct: 171 SRDPEKVVEQATQLVNSGYKEIVLTGIHTG---GYGQDLKDYNLAQLLRDLETINGLERI 227

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R ++     ++D +I        ++ +LH+P+QSGSD +LK M R++T   + + + ++ 
Sbjct: 228 RISSIEASQLTDEVIDVLERSTKVVRHLHIPLQSGSDTVLKRMRRKYTMDRFSERLTKLH 287

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              PD+A++SD IVGFPGET+ +F+ T D + K  +++   F YSPR+GTP + M +Q+D
Sbjct: 288 KALPDLAVTSDVIVGFPGETEAEFQETYDFIVKHKFSELHVFPYSPRIGTPAARMDDQID 347

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
           E +K ER+  L     +    +       ++EV+ E+ G  +G LVG +     V     
Sbjct: 348 EEIKNERVHKLITLSNQLGKLYASKFDQDVLEVIPEEQGDREGTLVGYADNYMKVQFEGD 407

Query: 444 NHNIGDIIKVRITDVK 459
              IG I+KV+IT   
Sbjct: 408 ESLIGQIVKVKITQAN 423


>gi|229075984|ref|ZP_04208957.1| hypothetical protein bcere0024_40230 [Bacillus cereus Rock4-18]
 gi|229104941|ref|ZP_04235597.1| hypothetical protein bcere0019_40790 [Bacillus cereus Rock3-28]
 gi|229117807|ref|ZP_04247171.1| hypothetical protein bcere0017_40780 [Bacillus cereus Rock1-3]
 gi|228665604|gb|EEL21082.1| hypothetical protein bcere0017_40780 [Bacillus cereus Rock1-3]
 gi|228678435|gb|EEL32656.1| hypothetical protein bcere0019_40790 [Bacillus cereus Rock3-28]
 gi|228707096|gb|EEL59296.1| hypothetical protein bcere0024_40230 [Bacillus cereus Rock4-18]
          Length = 450

 Score =  402 bits (1032), Expect = e-110,   Method: Composition-based stats.
 Identities = 134/449 (29%), Positives = 236/449 (52%), Gaps = 21/449 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
                + GC++N Y++  +  +F   GYER      +D+ V+NTC +     +K    + 
Sbjct: 3   TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKSDVYVINTCTVTNTGDKKSRQVIR 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R        +++  D ++ V GC AQ    EI+   P V++VVG Q   ++   +E  R 
Sbjct: 63  RA-------VRQNPDAVICVTGCYAQTSPAEIMA-IPGVDIVVGTQDREKMLGYIEEFRK 114

Query: 146 GKRVVDTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            ++ ++   ++     +E L +            A L IQEGC+ FCTFC++P+ RG+  
Sbjct: 115 ERQPINAVRNIMKTRVYEELDVP----YFTDRTRASLKIQEGCNNFCTFCIIPWARGLMR 170

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKGLVR 262
           SR   +V+ +A++L+D G  EI L G +     G G D +    + LL  + +E+ GL R
Sbjct: 171 SRDGKEVIKQAQQLVDAGYKEIVLTGIHTG---GYGEDIKDYNLAGLLRDMEAEVGGLKR 227

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LR ++     +SD +I+     +V++ +LH+P+QSGS+ +LK M R++T   +++ +DR+
Sbjct: 228 LRISSIEASQISDEVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRL 287

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           +   P +AI+SD IVGFPGET+++F  T + + +  +++   F YS R GTP + M +QV
Sbjct: 288 KEALPGLAITSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQV 347

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK---HGKEKGKLVGRSPWLQSVV 439
            E+VK +R+  L +   +    +     G+++E++ E+    G  +G  VG +     +V
Sbjct: 348 PEDVKNDRVHRLIELSNQLAKEYASQFEGEVLEIIPEEQFKDGDREGLYVGYTDNYLKIV 407

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG ++KV+IT         + V
Sbjct: 408 FEGSEELIGKLVKVKITKAGYPYNEAQFV 436


>gi|319400912|gb|EFV89131.1| RNA modification enzyme, MiaB family protein [Staphylococcus
           epidermidis FRI909]
          Length = 448

 Score =  402 bits (1032), Expect = e-110,   Method: Composition-based stats.
 Identities = 134/436 (30%), Positives = 232/436 (53%), Gaps = 17/436 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
                + GC++N Y++  +  +F    YERV    +AD+ V+NTC +     +K    + 
Sbjct: 3   TVAFHTLGCKVNHYETEAIWQLFKDANYERVEFETNADVFVINTCTVTNTGDKKSRQIIR 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R        I++  D +V V GC AQ    EI+   P V++VVG Q  ++L + +++ + 
Sbjct: 63  RA-------IRQNPDAVVCVTGCYAQTSSAEIM-EIPGVDIVVGTQDRHKLLDYIQQFQE 114

Query: 146 GKRVVDT--DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            ++ ++   +      +E L +            A L IQEGC+ FCTFC++P+ RG+  
Sbjct: 115 ERQPINGVGNIMKNRTYEELEVP----YFTDRTRASLKIQEGCNNFCTFCIIPWARGLMR 170

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR   +VV++A +L+++G  EI L G +     G G D +    + LL  L  I+GL R+
Sbjct: 171 SRDPEKVVEQATQLVNSGYKEIVLTGIHTG---GYGQDLKNYNLAQLLRDLDTIEGLERI 227

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R ++     ++D +I   G+ + ++ +LH+P+QSGSD +LK M R++T   + + + ++ 
Sbjct: 228 RISSIEASQLTDEVIDVIGNSNKVVRHLHIPLQSGSDDVLKRMRRKYTMAHFSERLTKLH 287

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              PD+A++SD IVGFPGE++++F+ T D +    +++   F YSPR+GTP + M  Q+D
Sbjct: 288 QALPDLAVTSDVIVGFPGESEEEFQETYDFIVNHHFSELHVFPYSPRIGTPAARMDNQID 347

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
           E  K  R+  L     +    +      +++EV+ E+ G+E   LVG +     V     
Sbjct: 348 EETKNVRVHKLISLSNQLAKEYASKFEDEVLEVIPEEMGEEPQTLVGYADNYMKVRFEGD 407

Query: 444 NHNIGDIIKVRITDVK 459
           +  IG I+KV+I    
Sbjct: 408 DSLIGQIVKVKIVKAN 423


>gi|115889751|ref|XP_801957.2| PREDICTED: hypothetical protein isoform 4 [Strongylocentrotus
           purpuratus]
 gi|115944930|ref|XP_001194545.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
          Length = 561

 Score =  402 bits (1032), Expect = e-110,   Method: Composition-based stats.
 Identities = 160/491 (32%), Positives = 250/491 (50%), Gaps = 50/491 (10%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +R + ++YGCQMNV D+     +    G+++V  +  AD+I+  TC IRE A +K+++ L
Sbjct: 52  RRVYFETYGCQMNVSDTEIAWAILEKSGFQKVEDISHADVILAVTCAIRENAEQKIWNRL 111

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
              ++LKN+R K    L + + GC+A+   +++L +S  V++V GP  Y  LP LL  A 
Sbjct: 112 KYFQSLKNNRRKGEVPLKIGLLGCMAERLKKKLLEQSKTVDIVAGPDAYRDLPRLLNVAG 171

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G+  ++   S+++ +  +  V    + K   +AF++I  GCD  C++C+VP+TRG E S
Sbjct: 172 SGQTAINVMLSMDETYADVVPVRLDKDSK---SAFVSIMRGCDNMCSYCIVPFTRGRERS 228

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG---------------------- 242
           R +  +VDE R L D GV E+T+LGQNVN++R    +                       
Sbjct: 229 RPIDSIVDEIRALSDQGVKEVTVLGQNVNSYRDVSEESYYSNSANEGSAVSEPTRLARGF 288

Query: 243 --------EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP 294
                       F+DLL  ++ +   +R+R+T+ HP+D  D ++ A  D   +   LHLP
Sbjct: 289 KSIYKPKKGGRRFADLLERVALVDPEMRIRFTSPHPKDFPDEVLYAIRDFPNICNQLHLP 348

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
            QSGS ++L+ M R ++   Y +++D +++  P +A+SSDFI GF GET++D   TM L+
Sbjct: 349 AQSGSTKVLQLMRRGYSREAYLELVDHVQTAIPGVALSSDFIAGFCGETEEDHEDTMSLL 408

Query: 355 DKIGYAQAFSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQI 413
             + Y  AF F YS R  T     M + V E VK  RL  +    R+     N   VG  
Sbjct: 409 RLVKYNYAFLFAYSMRQKTHAYHKMQDDVPEEVKQRRLREMITVCRDGMAEINATHVGAK 468

Query: 414 IEVLIEKHGKEKGK-LVGRSPWLQSVVLNSKNH---------------NIGDIIKVRITD 457
             VL+E   K   K LVGR+     VV+ +                    GD I V IT+
Sbjct: 469 QLVLLEGTSKRSEKDLVGRNDANTRVVIPNTPIPACNGHHHGNNNQSMKPGDYIAVEITE 528

Query: 458 VKISTLYGELV 468
                L G  +
Sbjct: 529 SNSQVLKGRPL 539


>gi|330466440|ref|YP_004404183.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Verrucosispora
           maris AB-18-032]
 gi|328809411|gb|AEB43583.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Verrucosispora
           maris AB-18-032]
          Length = 491

 Score =  402 bits (1032), Expect = e-110,   Method: Composition-based stats.
 Identities = 162/453 (35%), Positives = 244/453 (53%), Gaps = 28/453 (6%)

Query: 36  MNVYDSLRMEDMFFSQGYERVNSMDDA-DLIVLNTCHIREKAAEKVYSFLGRIRNLKNSR 94
           MNV+DS R+  +    GY R    DD+ D++V NTC +RE A  ++Y  LG +R +K+  
Sbjct: 1   MNVHDSERISGLLEQAGYVRAGESDDSPDVVVFNTCAVRENADNRLYGNLGHLRPVKDRH 60

Query: 95  IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDY 154
                 + + V GC+AQ +  +I+R++P V+VV G      LP LLERAR          
Sbjct: 61  ----PGMQIAVGGCLAQKDRGDIVRKAPWVDVVFGTHNIGSLPVLLERARHNAAAEVEIL 116

Query: 155 SVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEA 214
              D F           R+     +++I  GC+  CTFC+VP  RG E  R    ++ E 
Sbjct: 117 ESLDVFPSTLPTR----RESTYAGWVSISVGCNNTCTFCIVPALRGKEKDRRPGDILSEV 172

Query: 215 RKLIDNGVCEITLLGQNVNAWRGKGLD---------GEKCTFSDLLYSLSEIKGLVRLRY 265
           R L+D GV E+TLLGQNVN++     D         G +  F+ LL +  +I GL R+R+
Sbjct: 173 RALVDEGVLEVTLLGQNVNSYGVAFGDAGEPNWKRSGGRSAFAQLLRACGDIDGLERVRF 232

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
           T+ HP+D +D +I A  +   +   LH+P+QSGSD +L++M R + A  Y  IID++R+ 
Sbjct: 233 TSPHPKDFTDDVIAAMAETPNVCHSLHMPLQSGSDDVLRAMRRSYRAERYLGIIDKVRAA 292

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            PD AI++D IVGFPGET+ DF  T+D+V    ++ AF+F+YS R GTP + M  Q+ + 
Sbjct: 293 MPDAAITTDIIVGFPGETEADFERTLDVVRAARFSSAFTFQYSKRPGTPAATMDGQLPKQ 352

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLI---EK-HGKEKGKLVGRSPWLQSVVLN 441
           V  ER   L   + E   + N   VG+ +EVL+   E    +  G+L GR+   + V  +
Sbjct: 353 VVQERYERLIACVEEITWAENKKLVGEAVEVLVAVGEGRKDERTGRLSGRARDGRLVHFD 412

Query: 442 SKNH----NIGDIIKVRITDVKISTLY--GELV 468
           + ++      GDI+   +T      L   GE +
Sbjct: 413 AGSYAGAIRPGDIVHTVVTYAAPHHLNADGEPL 445


>gi|229163255|ref|ZP_04291210.1| hypothetical protein bcere0009_40230 [Bacillus cereus R309803]
 gi|228620318|gb|EEK77189.1| hypothetical protein bcere0009_40230 [Bacillus cereus R309803]
          Length = 454

 Score =  402 bits (1032), Expect = e-110,   Method: Composition-based stats.
 Identities = 135/449 (30%), Positives = 235/449 (52%), Gaps = 21/449 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
                + GC++N Y++  +  +F   GYER      AD+ V+NTC +     +K    + 
Sbjct: 3   TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKADVYVINTCTVTNTGDKKSRQVIR 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R        +++  D ++ V GC AQ    EI+   P V++VVG Q   ++   +E  R 
Sbjct: 63  RA-------VRQNPDAVICVTGCYAQTSPAEIMA-IPGVDIVVGTQDREKMLGYIEEFRQ 114

Query: 146 GKRVVDTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            ++ ++   ++     +E L +            A L IQEGC+ FCTFC++P+ RG+  
Sbjct: 115 ERQPINAVRNIMKTRVYEELDVP----YFTDRTRASLKIQEGCNNFCTFCIIPWARGLMR 170

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKGLVR 262
           SR   +V+ +A++L+D G  EI L G +     G G D +    + LL  + +E+ GL R
Sbjct: 171 SRDGKEVIKQAQQLVDAGYKEIVLTGIHTG---GYGEDIKDYNLAGLLRDMEAEVGGLKR 227

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LR ++     +SD +I+     +V++ +LH+P+QSGS+ +LK M R++T   +++ +DR+
Sbjct: 228 LRISSIEASQISDEVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRL 287

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           +   P +AI+SD IVGFPGET+++F  T + + +  +++   F YS R GTP + M +QV
Sbjct: 288 KEALPGLAITSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQV 347

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK---HGKEKGKLVGRSPWLQSVV 439
            E+VK +R+  L +   +    +      +++E++ E+    G  KG  VG +     +V
Sbjct: 348 PEDVKNDRVHRLIELSNQLAKEYASQFEDEVLEIIPEEQFKEGDRKGLYVGYTDNYLKIV 407

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG ++KV+IT         + V
Sbjct: 408 FEGSEDLIGKLVKVKITKAGYPYNEAQFV 436


>gi|254974871|ref|ZP_05271343.1| radical SAM-superfamily protein [Clostridium difficile QCD-66c26]
 gi|255092258|ref|ZP_05321736.1| radical SAM-superfamily protein [Clostridium difficile CIP 107932]
 gi|255313998|ref|ZP_05355581.1| radical SAM-superfamily protein [Clostridium difficile QCD-76w55]
 gi|255516678|ref|ZP_05384354.1| radical SAM-superfamily protein [Clostridium difficile QCD-97b34]
 gi|255649777|ref|ZP_05396679.1| radical SAM-superfamily protein [Clostridium difficile QCD-37x79]
 gi|260682934|ref|YP_003214219.1| radical SAM-superfamily protein [Clostridium difficile CD196]
 gi|260686532|ref|YP_003217665.1| radical SAM-superfamily protein [Clostridium difficile R20291]
 gi|260209097|emb|CBA62258.1| radical SAM-superfamily protein [Clostridium difficile CD196]
 gi|260212548|emb|CBE03514.1| radical SAM-superfamily protein [Clostridium difficile R20291]
          Length = 444

 Score =  402 bits (1032), Expect = e-109,   Method: Composition-based stats.
 Identities = 135/448 (30%), Positives = 229/448 (51%), Gaps = 15/448 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +  ++S GC  N+ D+  M  +  ++GY+ +   ++AD+I++NTC   E A ++    + 
Sbjct: 3   KIALESLGCSKNLVDAEIMMGILNNKGYKLIGDFEEADVIIVNTCGFIESAKQESIDTII 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
               LK    K G   L++V GC+AQ   EE+    P ++ +VG  +Y  + ++L+    
Sbjct: 63  NFSELK----KTGNLKLLIVTGCLAQRYSEELKTEIPEIDAIVGTGSYQNIDKILKELSE 118

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
             ++V  +       E L      Y       A+L I EGC   CT+C++P  RG   SR
Sbjct: 119 MHQIVSLNDIEFVFNEDLP----RYISTPSYMAYLKIGEGCSNNCTYCIIPKLRGKYRSR 174

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
               ++ EA+KL ++GV E+ ++ Q+     G  L G K   S+LL  L++I G   +R 
Sbjct: 175 KFEDIIKEAKKLAESGVKELVVIAQDTT-KYGFDLYG-KERLSELLEELAKIDGFKWIRV 232

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
             S+P  +++ LI+     D +  Y  +P+Q  S+ ILK MNR+ T  +    I+ IRS 
Sbjct: 233 MYSYPESITEELIQVIKKYDNICSYFDMPIQHASNNILKLMNRKTTKEDILNKINLIRSN 292

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            PD  + +  IVGFPGET+DDF+  +D V+++ + +  +F YS    TP   +   +DE 
Sbjct: 293 IPDAILRTTIIVGFPGETEDDFKQLVDFVEEVKFDRLGAFAYSREEDTPADRLPNHIDEE 352

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK---GKLVGRSPWLQSVVLNS 442
           VK +R   L    ++     ND  +G+  EVLIE+  ++    G+  G +  + S+V   
Sbjct: 353 VKIQRRDTLMMIQQKISEELNDKKIGKTYEVLIEEQIEDNVYTGRTQGDAEEIDSIVYVK 412

Query: 443 --KNHNIGDIIKVRITDVKISTLYGELV 468
              N  +G+ + V+I D     L G+++
Sbjct: 413 SVDNLEVGEFVSVQINDAMEYDLMGDVL 440


>gi|313681425|ref|YP_004059163.1| tRNA-i(6)a37 thiotransferase enzyme miab [Sulfuricurvum kujiense
           DSM 16994]
 gi|313154285|gb|ADR32963.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Sulfuricurvum kujiense
           DSM 16994]
          Length = 433

 Score =  402 bits (1032), Expect = e-109,   Method: Composition-based stats.
 Identities = 159/449 (35%), Positives = 246/449 (54%), Gaps = 18/449 (4%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++ F+++ GC MNV DS  M     + +GYE  +    ADLI++NTC +REK   K++
Sbjct: 1   MSKKLFIETLGCAMNVRDSEHMIAELNAHEGYELTDDAASADLILINTCSVREKPVHKLF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S LG    LK +  K      + V GC A   G+EI++R+P VN V+G +   ++ ++L 
Sbjct: 61  SELGVFNKLKKADAK------IGVCGCTASHLGKEIIKRAPYVNFVLGARNVSKIADVLH 114

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           R R  +  +D D S     +          R     A++ I  GCDK CTFC+VP TRG 
Sbjct: 115 RDRAVEVEIDYDESQFAFKDF---------RSSPYKAYINISIGCDKQCTFCIVPKTRGD 165

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGL 260
           EIS     +V E RK ++NG  E+ LLGQNVN +  +  D  +K  F++LL  +S ++GL
Sbjct: 166 EISIPPDLIVAEVRKAVENGAKEVFLLGQNVNNYGRRFSDVNDKMNFTELLRRVSAVEGL 225

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+T+ HP  M D  ++       +   +H+P+QSGS  ILK+M R +T   +     
Sbjct: 226 ERIRFTSPHPFHMDDEFLEEFARNPKICKSMHMPLQSGSTDILKAMKRGYTKEWFLNRAR 285

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R + PD++IS+D IV FPGE+D DF  T+D++ ++ + Q FSFKYSPR  T   +   
Sbjct: 286 KLRELVPDVSISTDIIVAFPGESDADFEDTLDVMKEVRFEQVFSFKYSPRPLTEAESFTN 345

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440
            VD  + + RL  LQ        S +   +G+  +V  E+  +  G + GRS     + +
Sbjct: 346 VVDSELGSFRLSTLQAYQDTILDSISAGLLGKEYDVYFEEL-RSDGYVAGRSDNNIMIKV 404

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELVV 469
                 +G I +V+IT+V  S  YGE++ 
Sbjct: 405 KGSEEWLGKIARVKITEVSRSVQYGEIIA 433


>gi|169349836|ref|ZP_02866774.1| hypothetical protein CLOSPI_00574 [Clostridium spiroforme DSM 1552]
 gi|169293404|gb|EDS75537.1| hypothetical protein CLOSPI_00574 [Clostridium spiroforme DSM 1552]
          Length = 428

 Score =  402 bits (1032), Expect = e-109,   Method: Composition-based stats.
 Identities = 152/446 (34%), Positives = 249/446 (55%), Gaps = 21/446 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +     + GC++N Y+S  M  +F   GY+ V+  + AD+ V+NTC +      K    +
Sbjct: 2   KTIAFHTLGCKVNTYESNAMLKIFNEAGYQEVDFKEIADVYVINTCTVTNTGDSKSRQMI 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA- 143
            +        I++     V VAGC +Q   EEI  +   V VV+G Q    + + ++   
Sbjct: 62  RKA-------IRKNPQATVCVAGCYSQIAPEEI-EQIEGVGVVLGTQHRKDIVKYVDEYL 113

Query: 144 RFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           + GK V+  D  +   KFE L+I     +R +   AFL IQ+GC+ FCT+C++PY RG  
Sbjct: 114 KTGKPVIKVDNVMNLKKFEDLNI-----DRFKNTRAFLKIQDGCNNFCTYCIIPYARGRV 168

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR    V+++A+ L+ NG  EI L G +     G G D +  +F DLL  L +I GL R
Sbjct: 169 RSRDKDSVLNQAKTLVANGYVEIVLTGIHTA---GYGEDLDNYSFYDLLVDLVKIDGLKR 225

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LR ++     +SD +I   G  D+++ +LH+P+QSG D  LK MNR++T  +Y + I++I
Sbjct: 226 LRISSIETSQISDEIINLIGSNDIIVDHLHIPLQSGCDATLKRMNRKYTTSQYLEKINKI 285

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+  P+IA ++D IVGFPGE+D++F  T + + ++ Y++   F YS R  TP + M +QV
Sbjct: 286 RNYLPNIAFTTDVIVGFPGESDEEFEETYNFIKEVNYSELHVFPYSLRRNTPAAKMKDQV 345

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
           D+ +K ER+  L +  ++    F    +G+I++VL EK  ++   LVG +     V + +
Sbjct: 346 DDKIKHERVNRLLELSKKLNRDFALKQIGKILKVLFEK--RDGDYLVGHASDYLKVKVKT 403

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
            ++ IG+I++V+I +     L G +V
Sbjct: 404 TDNLIGEIVEVKINN-YEGILEGSVV 428


>gi|268611648|ref|ZP_06145375.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Ruminococcus
           flavefaciens FD-1]
          Length = 456

 Score =  401 bits (1031), Expect = e-109,   Method: Composition-based stats.
 Identities = 152/445 (34%), Positives = 238/445 (53%), Gaps = 14/445 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + +V+S+GCQ +V D  +++ +    G       ++AD+I+LNTC +RE A ++V+  +G
Sbjct: 21  KAYVRSFGCQQSVSDGEKIKGLLGLMGCSFTEDENEADMIILNTCAVRENAEDRVFGIVG 80

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERA 143
            ++ LK         L++ +AGC+       E+I +  P V+ V+G      LP LL   
Sbjct: 81  SMKKLKE----LKPSLIIGIAGCMTAQSHVAEKIKKSYPQVDFVMGTSAISSLPHLLLEC 136

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             G +    D S  D F  +        R     A + +  GC+ FCT+C+VPY RG E 
Sbjct: 137 LNGAKF-SADISEYDDFSAVVP----QIRDSSFKASVPVMFGCNNFCTYCIVPYVRGRER 191

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR    +++E R L+ +G  EI LLGQNVN+  GK L+    TF  LL  L +I+G   +
Sbjct: 192 SRQPQDIINEVRGLVRDGYKEIMLLGQNVNS-YGKDLE-NGMTFPQLLRELDKIEGDFWI 249

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+ +SHP+D +  L  A  D   +  +LHLPVQSGS+ +L+ MNRR+T  +Y + +D IR
Sbjct: 250 RFMSSHPKDATKKLADAIFDCTKVAKHLHLPVQSGSNDVLRRMNRRYTVEKYMETVDYIR 309

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              PD ++++D IVGFP E D+DF AT+D++ ++ Y   +SF YS R GT  + M + + 
Sbjct: 310 QRDPDFSLTTDLIVGFPDEKDEDFEATLDIIRRVKYDNIYSFIYSKRTGTKAAEMDDPIT 369

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRSPWLQSVVLNS 442
           +  K  R+  L +  RE         +G+ + VL +   K+ +G L G+S     V    
Sbjct: 370 DEEKGMRMRRLLEVQREISSEHYKRFIGRTMRVLADGKAKKREGWLTGKSSEFIIVEFEG 429

Query: 443 KNHNIGDIIKVRITDVKISTLYGEL 467
            +  IG  + V ITD     + G +
Sbjct: 430 DSSLIGQFVDVEITDAMNWAVSGVI 454


>gi|160892633|ref|ZP_02073423.1| hypothetical protein CLOL250_00163 [Clostridium sp. L2-50]
 gi|156865674|gb|EDO59105.1| hypothetical protein CLOL250_00163 [Clostridium sp. L2-50]
          Length = 483

 Score =  401 bits (1031), Expect = e-109,   Method: Composition-based stats.
 Identities = 159/444 (35%), Positives = 246/444 (55%), Gaps = 16/444 (3%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           +++YGCQMNV DS ++  +    GY   +  +DADL++ NTC +RE A  KVY  LG ++
Sbjct: 52  IQTYGCQMNVRDSEKLTGILEEIGYT-SSDSEDADLVIYNTCTVRENANRKVYGHLGIMK 110

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPE-LLERARF 145
           + K        D ++ + GC+ Q       I ++   V++V G    ++L E    R   
Sbjct: 111 HDKE----THPDKMIGLCGCMMQEPDVVATIQKKYRFVDMVFGTHNVFKLAEIYCNRIEA 166

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G +VVD         E L +      ++    + + I  GC+ FCT+C+VPY RG E SR
Sbjct: 167 GGQVVDIWKDTNLVVEDLPV-----KKEFPFKSGVNIMFGCNNFCTYCIVPYVRGRERSR 221

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
               ++ E ++L + GV EI LLGQNVN+  GK L+ +  TF++LL  ++E+ G+ R+R+
Sbjct: 222 QPEDIIREVKRLSEEGVKEIMLLGQNVNS-YGKTLE-KPMTFAELLQKVTEVDGIERVRF 279

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
            TSHP+D+SD LI      + +  ++HLP+QSGS RIL  MNRR+T   Y +++D+IR  
Sbjct: 280 MTSHPKDLSDELIDVIAANEKICRHIHLPMQSGSSRILNQMNRRYTKESYLELVDKIRRQ 339

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P+I++++D IVGFPGET++DF  TMD+V+++ +  AF+F YS R GTP +   +   + 
Sbjct: 340 IPEISLTTDIIVGFPGETEEDFLETMDVVNRVRFDTAFTFIYSKRTGTPAATFEDHATKE 399

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVLNSKN 444
               R   L K++ E          GQ++ VLIE   ++  + L GR      V      
Sbjct: 400 EIQNRFDRLIKRVSEISGEEICRYKGQVMPVLIESVSEQNPELLTGRLSNNILVHFKGDP 459

Query: 445 HNIGDIIKVRITDVKISTLYGELV 468
             IG+I  V + + K     G LV
Sbjct: 460 SMIGEIRDVSLDECKGFYYMGNLV 483


>gi|218132529|ref|ZP_03461333.1| hypothetical protein BACPEC_00388 [Bacteroides pectinophilus ATCC
           43243]
 gi|217992639|gb|EEC58641.1| hypothetical protein BACPEC_00388 [Bacteroides pectinophilus ATCC
           43243]
          Length = 484

 Score =  401 bits (1031), Expect = e-109,   Method: Composition-based stats.
 Identities = 161/443 (36%), Positives = 249/443 (56%), Gaps = 14/443 (3%)

Query: 28  FVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRI 87
            + ++GCQMN  DS ++  +    GY   +S ++AD ++ NTC +RE A  KVY  LG +
Sbjct: 50  HIATFGCQMNARDSEKLMGILEQIGYVAADS-ENADFVLYNTCTVRENANLKVYGRLGHL 108

Query: 88  RNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERARF 145
             +K    +   D+++ + GC+ Q     E+I +    V+VV G    Y+L ELL     
Sbjct: 109 GAVK----RSNPDMMIGMCGCMMQEPDVVEKIRKSYRFVDVVFGTHNIYKLAELLVSRFE 164

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            + ++   +   DK       +  ++ K+G    + I  GC+ FC++C+VPY RG E SR
Sbjct: 165 SEGMIIDIWKDTDKIVEELPNERRFSFKQG----VNITFGCNNFCSYCIVPYVRGRERSR 220

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
               ++ E   L+ +GV E+ LLGQNVN+  G+ L+    TF+ LL  + +I GL R+R+
Sbjct: 221 EPKDIIREIESLVADGVVEVMLLGQNVNS-YGRSLET-PVTFAQLLQEIEKIDGLERIRF 278

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
            T HP+D+SD LI+   +   +  ++HLP+QSGS RILK MNR +T   Y +++++IR  
Sbjct: 279 MTPHPKDLSDELIEVMKNSKKICNHVHLPLQSGSSRILKLMNRHYTKEHYLELVEKIRRE 338

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            PD++I++D IVGFP ET++DF  TMD+V+K  Y  A++F YS R GTP ++M  QV E+
Sbjct: 339 IPDVSITTDIIVGFPQETEEDFLETMDVVEKAQYESAYTFIYSKRTGTPAASMDGQVPED 398

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GRSPWLQSVVLNSKN 444
           V  +R   L +KL        D  V  I +VL+E        LV GR      V    ++
Sbjct: 399 VVKDRFDRLLEKLSGISAKHIDKYVDTIQDVLVESVNDHDSSLVTGRMRNNTLVHFPGES 458

Query: 445 HNIGDIIKVRITDVKISTLYGEL 467
             +G I+ V +T+ K    +GEL
Sbjct: 459 GLVGKIVNVHLTEGKGFYYFGEL 481


>gi|284929205|ref|YP_003421727.1| 30S ribosomal protein S12P methylthiotransferase [cyanobacterium
           UCYN-A]
 gi|284809649|gb|ADB95346.1| SSU ribosomal protein S12P methylthiotransferase [cyanobacterium
           UCYN-A]
          Length = 439

 Score =  401 bits (1031), Expect = e-109,   Method: Composition-based stats.
 Identities = 132/446 (29%), Positives = 223/446 (50%), Gaps = 19/446 (4%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
             +   GC+ N  DS  +  +  ++GY   ++ + AD +V+NTC   ++A E+    L  
Sbjct: 7   IAISHLGCEKNRIDSEHILGLLAAEGYSVSSNENLADYVVVNTCSFIQQAREESVRTLVE 66

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           +               +++AGC+AQ   +++L   P V  +VG   Y  + + ++R   G
Sbjct: 67  LAENNKK---------IIIAGCMAQHFQDQLLEELPEVVAIVGTGNYQEIVKTVQRVELG 117

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           +RV+D         +        Y       A+L I EGC+  CTFC++P+ RG + SR+
Sbjct: 118 ERVIDISQKPTFIADETVP---RYRTTNEGVAYLRIAEGCNYRCTFCIIPHLRGNQRSRT 174

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
           +  +V EA++L + GV EI ++ Q +    G  L G K   ++LL +L ++  +  +R  
Sbjct: 175 IESIVAEAQQLANEGVQEIIIVSQ-ITTNYGLDLYG-KVKLAELLQALGKVN-VPWIRVH 231

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
            ++P  ++  ++KA  ++  ++PYL LP+Q    +ILK+MNR        +II  IR+  
Sbjct: 232 YAYPTGLTAEVLKAVKEVPNVIPYLDLPLQHSHPKILKAMNRPWKEAINDEIIKSIRASI 291

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           PD+ + + FIVGFPGETD+ F   +  + +  +     F +SP  GTP   M +QV   +
Sbjct: 292 PDVVLRTTFIVGFPGETDEYFEHLVKFIKRHHFDHVGVFVFSPEEGTPSYKMPDQVPLEI 351

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVVLNS 442
             ER   L +  +      N   VG+I++VLIE+   +  + +GR    SP +  VV   
Sbjct: 352 AQERRDYLMEIQQPISNRKNQQYVGKIVKVLIEQENTKTHQYIGRSIKSSPDVDGVVFVK 411

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
               +  II V IT      LYG++V
Sbjct: 412 GKAQLNSIIPVEITKADAYDLYGKVV 437


>gi|310643065|ref|YP_003947823.1| tRNA-i(6)a37 thiotransferase enzyme miab [Paenibacillus polymyxa
           SC2]
 gi|309248015|gb|ADO57582.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Paenibacillus polymyxa
           SC2]
          Length = 447

 Score =  401 bits (1031), Expect = e-109,   Method: Composition-based stats.
 Identities = 141/448 (31%), Positives = 247/448 (55%), Gaps = 21/448 (4%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDD-ADLIVLNTCHIREKAAEKVYSFLG 85
               + GC++N YD+  +  +F  +GYE+V+  +  AD+ ++NTC +     +K      
Sbjct: 4   VAFYTLGCKVNFYDTEAIWQLFKKEGYEQVDFDEQTADVYLINTCTVTNTGDKKSRQI-- 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                    I+   D +V V GC AQ    EI+   P V++V+G Q   ++   ++  + 
Sbjct: 62  -----IRRAIRRNPDAIVAVTGCYAQTSPAEIMD-IPGVDLVIGTQDRDKIIPFVKEIQE 115

Query: 146 GKRVVDTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            ++ V+   ++     FE + + D  ++ +    AFL IQ+GC+ FCTFC++P++RG+  
Sbjct: 116 SRQPVNAVRNIMKTRVFEEMDVPDFAHHTR----AFLKIQDGCNNFCTFCIIPWSRGLSR 171

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR  + ++ +AR+L+  G  EI L G +     G G D +    SDLL+ L +++GL R+
Sbjct: 172 SRDAASIITQARQLVHAGYKEIVLTGIHTG---GYGDDMDNYDLSDLLWDLEKVEGLERI 228

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R ++     + + ++      + L+ + H+P+Q+G D +LK M R++T  E+   +  IR
Sbjct: 229 RISSIEASQIDEKMLDVLKRSNKLVRHFHIPLQAGDDTVLKRMRRKYTTEEFYNKMLMIR 288

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              PD+AI++D IVGFPGETD+ FR   +L+ KIG+++   F YS R GTP + M +QVD
Sbjct: 289 KAMPDVAITTDIIVGFPGETDEMFRNGYELMKKIGFSEMHVFPYSKRTGTPAARMEDQVD 348

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE---KHGKEKGKLVGRSPWLQSVVL 440
           E+VK  R+  L +   + Q+++ +  VGQ++EV+ E   K  ++ G L G S     +V 
Sbjct: 349 EDVKNARVRELIELSEQMQLAYAEKFVGQVLEVIPEVAPKGTEDSGILYGYSDNYIQLVF 408

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 +G + +V++T   ++   G+LV
Sbjct: 409 EGNKDLVGKVCRVKLTKAGVNESEGQLV 436


>gi|23465968|ref|NP_696571.1| (dimethylallyl)adenosine tRNA methylthiotransferase
           [Bifidobacterium longum NCC2705]
 gi|317482468|ref|ZP_07941485.1| MiaB family RNA modification enzyme [Bifidobacterium sp.
           12_1_47BFAA]
 gi|81753721|sp|Q8G4H4|MIAB_BIFLO RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|23326682|gb|AAN25207.1| widely conserved hypothetical protein in upf0004 [Bifidobacterium
           longum NCC2705]
 gi|316916128|gb|EFV37533.1| MiaB family RNA modification enzyme [Bifidobacterium sp.
           12_1_47BFAA]
          Length = 480

 Score =  401 bits (1031), Expect = e-109,   Method: Composition-based stats.
 Identities = 160/454 (35%), Positives = 247/454 (54%), Gaps = 25/454 (5%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVN----SMDDADLIVLNTCHIREKAAEKVYS 82
           F + + GCQMNV+DS R+  +  + GY        + +D DL+VLNTC +RE AAE++Y 
Sbjct: 27  FHIHTLGCQMNVHDSERIAGVLEANGYVPATEDQINDNDLDLLVLNTCAVRENAAERMYG 86

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +GR   +K        +L + V GC+AQ + ++I   +P V+ V G +    LP+LL++
Sbjct: 87  TIGRFNRVKL----VRPNLQIAVGGCMAQLDRKKIADTAPWVSAVFGTKNIEDLPKLLDQ 142

Query: 143 ARF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
            R  GK  V     +     +L        R   +++++ I  GC+  CTFC+VP TRG 
Sbjct: 143 NRATGKAQVQVTEQLRQFPSQLPAA-----RASRISSWVAISVGCNNTCTFCIVPTTRGK 197

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E  R    ++DE R+ + +G  E+TLLGQNVN++ G G+ G++  FS LL +   I GL 
Sbjct: 198 EKDRRPGDILDEIRQCVADGAKEVTLLGQNVNSF-GYGI-GDRYAFSKLLRACGTIDGLE 255

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+T+ HP   +D +I A  +   +M  LH P+QSGSDRIL++M R + + ++  I+ R
Sbjct: 256 RVRFTSPHPAAFTDDVIAAMAETPNIMHQLHFPLQSGSDRILRAMRRSYRSAKFLDILGR 315

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           IR+  PD  IS+D IVGFPGET++DF+ TMD+V +  ++ AF+F YSPR GTP + M EQ
Sbjct: 316 IRAAMPDAQISTDIIVGFPGETEEDFQQTMDVVRQARFSSAFTFIYSPRPGTPAAAM-EQ 374

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK----HGKEKGKLVGRSPWLQS 437
           +  +V  +R   L     +          G+ +EV+I         +  ++ GR      
Sbjct: 375 IPRDVVQDRFDRLVALQEQITEENLATFEGRDVEVMITGKLGKKDTDTHRVTGREKTGVL 434

Query: 438 VVLNSKN----HNIGDIIKVRITDVKISTLYGEL 467
           V +          IGD +   +T      L  + 
Sbjct: 435 VHIGVPEGEPVPEIGDFVTATVTHAGRHNLLADP 468


>gi|219849842|ref|YP_002464275.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Chloroflexus
           aggregans DSM 9485]
 gi|219544101|gb|ACL25839.1| RNA modification enzyme, MiaB family [Chloroflexus aggregans DSM
           9485]
          Length = 459

 Score =  401 bits (1031), Expect = e-109,   Method: Composition-based stats.
 Identities = 156/468 (33%), Positives = 244/468 (52%), Gaps = 27/468 (5%)

Query: 7   LIGVAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIV 66
           +I          DQ    +R++V + GCQMN+ DS R+E      GY      ++A  IV
Sbjct: 4   VIFFEQPTRPDRDQTPRERRYYVWTVGCQMNISDSERLEAALQGVGYSPAARPEEASFIV 63

Query: 67  LNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEIL-RRSPIVN 125
           LN+C +R  A E++   LG +  +K S      D  +V+ GC+       I   + P+V+
Sbjct: 64  LNSCSVRASAEERILGKLGELVRVKRSY----PDTKIVLWGCMVGPNNRSIFAEQLPMVD 119

Query: 126 VVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEG 185
             V P     +  L           +  Y++++    L + D     +  V+  + IQ G
Sbjct: 120 HFVSPSAVDEVVAL---------APNPIYTLDE--PALPVRDWS---RPPVSVHVPIQYG 165

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C+  C++CV+P  RG E SR L ++V+E R+++  G  EITLLGQ V++W G  L G   
Sbjct: 166 CNMTCSYCVIPLRRGRERSRPLPEIVEEVRRIVARGAKEITLLGQIVDSW-GHDLPGRPE 224

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
             +DLL ++  I GL+RLR+ TSHP  M+D LI+    L    P ++LPVQ+GSDR+LK 
Sbjct: 225 -LADLLEAVDPIPGLLRLRFLTSHPAWMTDRLIETVARLPRCQPEINLPVQAGSDRVLKL 283

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           M R +T   Y+ +I +IR+  P I++++D IVG PGET++DFR TM+L  +IG+ +    
Sbjct: 284 MRRGYTVARYKSLIAKIRAAIPHISLTTDIIVGHPGETEEDFRQTMELCAEIGFDKVHIA 343

Query: 366 KYSPRLGTPGSNMLEQ----VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKH 421
            +S R GT  +   +     V  +VK ER   L++   +         +GQ +EVL+E  
Sbjct: 344 AFSARPGTLAAEQEQDPALAVPPDVKEERRRRLEQLQEQIATERMARFLGQTVEVLVEGE 403

Query: 422 GKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
            K  GK  GR+P  + V  +      G ++ V+IT     +L G  ++
Sbjct: 404 SK--GKWRGRTPGNRLVFFSHPADLTGQLVPVKITATSPWSLQGVPLL 449


>gi|21283257|ref|NP_646345.1| hypothetical protein MW1528 [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49486411|ref|YP_043632.1| hypothetical protein SAS1514 [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|57651969|ref|YP_186473.1| hypothetical protein SACOL1633 [Staphylococcus aureus subsp. aureus
           COL]
 gi|87160469|ref|YP_494231.1| hypothetical protein SAUSA300_1536 [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|88195385|ref|YP_500189.1| hypothetical protein SAOUHSC_01679 [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|148268060|ref|YP_001247003.1| RNA modification protein [Staphylococcus aureus subsp. aureus JH9]
 gi|150394128|ref|YP_001316803.1| RNA modification protein [Staphylococcus aureus subsp. aureus JH1]
 gi|151221691|ref|YP_001332513.1| hypothetical protein NWMN_1479 [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|161509804|ref|YP_001575463.1| hypothetical protein USA300HOU_1577 [Staphylococcus aureus subsp.
           aureus USA300_TCH1516]
 gi|253316051|ref|ZP_04839264.1| hypothetical protein SauraC_07882 [Staphylococcus aureus subsp.
           aureus str. CF-Marseille]
 gi|253732229|ref|ZP_04866394.1| 2-methylthioadenine synthase [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253733173|ref|ZP_04867338.1| 2-methylthioadenine synthase [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|257793652|ref|ZP_05642631.1| MiaB-like tRNA modifying enzyme [Staphylococcus aureus A9781]
 gi|258411048|ref|ZP_05681328.1| RNA modification protein [Staphylococcus aureus A9763]
 gi|258420148|ref|ZP_05683103.1| MiaB-like tRNA modifying enzyme [Staphylococcus aureus A9719]
 gi|258437408|ref|ZP_05689392.1| RNA modification protein [Staphylococcus aureus A9299]
 gi|258443614|ref|ZP_05691953.1| conserved hypothetical protein [Staphylococcus aureus A8115]
 gi|258446821|ref|ZP_05694975.1| RNA modification protein [Staphylococcus aureus A6300]
 gi|258448735|ref|ZP_05696847.1| RNA modification protein [Staphylococcus aureus A6224]
 gi|258450595|ref|ZP_05698657.1| MiaB-like tRNA modifying enzyme [Staphylococcus aureus A5948]
 gi|258453552|ref|ZP_05701530.1| MiaB-like tRNA modifying enzyme [Staphylococcus aureus A5937]
 gi|262049149|ref|ZP_06022026.1| hypothetical protein SAD30_0306 [Staphylococcus aureus D30]
 gi|262051236|ref|ZP_06023460.1| hypothetical protein SA930_1667 [Staphylococcus aureus 930918-3]
 gi|269203204|ref|YP_003282473.1| hypothetical protein SAAV_1568 [Staphylococcus aureus subsp. aureus
           ED98]
 gi|282893077|ref|ZP_06301311.1| MiaB tRNA modifying enzyme [Staphylococcus aureus A8117]
 gi|282920125|ref|ZP_06327850.1| MiaB-like tRNA modifying enzyme [Staphylococcus aureus A9765]
 gi|282928209|ref|ZP_06335814.1| MiaB-like tRNA modifying enzyme [Staphylococcus aureus A10102]
 gi|284024635|ref|ZP_06379033.1| hypothetical protein Saura13_08590 [Staphylococcus aureus subsp.
           aureus 132]
 gi|294848607|ref|ZP_06789353.1| MiaB-like tRNA modifying enzyme [Staphylococcus aureus A9754]
 gi|295406699|ref|ZP_06816504.1| MiaB-like tRNA modifying enzyme [Staphylococcus aureus A8819]
 gi|296275802|ref|ZP_06858309.1| hypothetical protein SauraMR_05622 [Staphylococcus aureus subsp.
           aureus MR1]
 gi|297207705|ref|ZP_06924140.1| Fe-S oxidoreductase [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|297245719|ref|ZP_06929584.1| MiaB-like tRNA modifying enzyme [Staphylococcus aureus A8796]
 gi|300911786|ref|ZP_07129229.1| Fe-S oxidoreductase [Staphylococcus aureus subsp. aureus TCH70]
 gi|304380835|ref|ZP_07363495.1| Fe-S oxidoreductase [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|21204697|dbj|BAB95393.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49244854|emb|CAG43315.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|57286155|gb|AAW38249.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           COL]
 gi|87126443|gb|ABD20957.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87202943|gb|ABD30753.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|147741129|gb|ABQ49427.1| RNA modification enzyme, MiaB family [Staphylococcus aureus subsp.
           aureus JH9]
 gi|149946580|gb|ABR52516.1| RNA modification enzyme, MiaB family [Staphylococcus aureus subsp.
           aureus JH1]
 gi|150374491|dbj|BAF67751.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|160368613|gb|ABX29584.1| possible 2-methylthioadenine synthase [Staphylococcus aureus subsp.
           aureus USA300_TCH1516]
 gi|253724018|gb|EES92747.1| 2-methylthioadenine synthase [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253728713|gb|EES97442.1| 2-methylthioadenine synthase [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|257787624|gb|EEV25964.1| MiaB-like tRNA modifying enzyme [Staphylococcus aureus A9781]
 gi|257840198|gb|EEV64662.1| RNA modification protein [Staphylococcus aureus A9763]
 gi|257843859|gb|EEV68253.1| MiaB-like tRNA modifying enzyme [Staphylococcus aureus A9719]
 gi|257848613|gb|EEV72601.1| RNA modification protein [Staphylococcus aureus A9299]
 gi|257851020|gb|EEV74963.1| conserved hypothetical protein [Staphylococcus aureus A8115]
 gi|257854396|gb|EEV77345.1| RNA modification protein [Staphylococcus aureus A6300]
 gi|257858013|gb|EEV80902.1| RNA modification protein [Staphylococcus aureus A6224]
 gi|257861753|gb|EEV84552.1| MiaB-like tRNA modifying enzyme [Staphylococcus aureus A5948]
 gi|257864283|gb|EEV87033.1| MiaB-like tRNA modifying enzyme [Staphylococcus aureus A5937]
 gi|259160873|gb|EEW45893.1| hypothetical protein SA930_1667 [Staphylococcus aureus 930918-3]
 gi|259162818|gb|EEW47383.1| hypothetical protein SAD30_0306 [Staphylococcus aureus D30]
 gi|262075494|gb|ACY11467.1| hypothetical protein SAAV_1568 [Staphylococcus aureus subsp. aureus
           ED98]
 gi|269941066|emb|CBI49450.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           TW20]
 gi|282590016|gb|EFB95098.1| MiaB-like tRNA modifying enzyme [Staphylococcus aureus A10102]
 gi|282594473|gb|EFB99458.1| MiaB-like tRNA modifying enzyme [Staphylococcus aureus A9765]
 gi|282764395|gb|EFC04521.1| MiaB tRNA modifying enzyme [Staphylococcus aureus A8117]
 gi|283470855|emb|CAQ50066.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           ST398]
 gi|285817258|gb|ADC37745.1| MiaB family protein, possibly involved in tRNA or rRNA modification
           [Staphylococcus aureus 04-02981]
 gi|294824633|gb|EFG41056.1| MiaB-like tRNA modifying enzyme [Staphylococcus aureus A9754]
 gi|294968446|gb|EFG44470.1| MiaB-like tRNA modifying enzyme [Staphylococcus aureus A8819]
 gi|296887722|gb|EFH26620.1| Fe-S oxidoreductase [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|297177370|gb|EFH36622.1| MiaB-like tRNA modifying enzyme [Staphylococcus aureus A8796]
 gi|298694858|gb|ADI98080.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           ED133]
 gi|300886032|gb|EFK81234.1| Fe-S oxidoreductase [Staphylococcus aureus subsp. aureus TCH70]
 gi|304340562|gb|EFM06496.1| Fe-S oxidoreductase [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|312829964|emb|CBX34806.1| RNA modification enzyme, MiaB family protein [Staphylococcus aureus
           subsp. aureus ECT-R 2]
 gi|315129855|gb|EFT85845.1| possible 2-methylthioadenine synthase [Staphylococcus aureus subsp.
           aureus CGS03]
 gi|315198728|gb|EFU29056.1| possible 2-methylthioadenine synthase [Staphylococcus aureus subsp.
           aureus CGS01]
 gi|320140539|gb|EFW32393.1| MiaB-like tRNA modifying enzyme [Staphylococcus aureus subsp.
           aureus MRSA131]
 gi|320144076|gb|EFW35845.1| MiaB-like tRNA modifying enzyme [Staphylococcus aureus subsp.
           aureus MRSA177]
 gi|323440474|gb|EGA98186.1| hypothetical protein SAO11_0770 [Staphylococcus aureus O11]
 gi|323443248|gb|EGB00866.1| hypothetical protein SAO46_0897 [Staphylococcus aureus O46]
 gi|329727386|gb|EGG63842.1| tRNA methylthiotransferase YqeV [Staphylococcus aureus subsp.
           aureus 21172]
 gi|329728416|gb|EGG64853.1| tRNA methylthiotransferase YqeV [Staphylococcus aureus subsp.
           aureus 21189]
 gi|329733119|gb|EGG69456.1| tRNA methylthiotransferase YqeV [Staphylococcus aureus subsp.
           aureus 21193]
          Length = 448

 Score =  401 bits (1030), Expect = e-109,   Method: Composition-based stats.
 Identities = 139/436 (31%), Positives = 230/436 (52%), Gaps = 17/436 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
                + GC++N Y++  +  +F    YERV+   +AD+ V+NTC +     +K    + 
Sbjct: 3   TVAFHTLGCKVNHYETEAIWQLFKEANYERVDFEANADVFVINTCTVTNTGDKKSRQIIR 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R        I++  D ++ V GC AQ    EI+   P V+VVVG Q  ++L   ++  R 
Sbjct: 63  RA-------IRQNPDAVICVTGCYAQTSSAEIM-EIPGVDVVVGTQDRHKLLGYIDEFRK 114

Query: 146 GKRVVDT--DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            ++ ++   +     K+E L +            A L IQEGC+ FCTFC++P+ RG+  
Sbjct: 115 ERQPINGVGNIMKNRKYEELDVP----YFTDRTRASLKIQEGCNNFCTFCIIPWARGLMR 170

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR   +VV++A +L+++G  EI L G +     G G D +    + LL  L  I GL R+
Sbjct: 171 SRDPEKVVEQATQLVNSGYKEIVLTGIHTG---GYGQDLKDYNLAQLLRDLETINGLERI 227

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R ++     ++D +I        ++ +LH+P+QSGSD +LK M R++T   + + + ++ 
Sbjct: 228 RISSIEASQLTDEVIDVLERSTKVVRHLHIPLQSGSDTVLKRMRRKYTMDRFSERLTKLH 287

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              PD+A++SD IVGFPGET+ +F+ T D + K  +++   F YSPR+GTP + M +Q+D
Sbjct: 288 KALPDLAVTSDVIVGFPGETEAEFQETYDFIVKHKFSELHVFPYSPRIGTPAARMDDQID 347

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
           E +K ER+  L     +    +       ++EV+ E+ G  +G LVG +     V     
Sbjct: 348 EEIKNERVHKLITLSNQLGKLYASKFDQDVLEVIPEEQGDTEGTLVGYADNYMKVQFEGD 407

Query: 444 NHNIGDIIKVRITDVK 459
              IG I+KV+IT   
Sbjct: 408 ESLIGQIVKVKITQAN 423


>gi|302037248|ref|YP_003797570.1| isopentenyl-adenosine A37 tRNA methylthiolase MiaB [Candidatus
           Nitrospira defluvii]
 gi|300605312|emb|CBK41645.1| Isopentenyl-adenosine A37 tRNA methylthiolase MiaB [Candidatus
           Nitrospira defluvii]
          Length = 452

 Score =  401 bits (1030), Expect = e-109,   Method: Composition-based stats.
 Identities = 157/459 (34%), Positives = 243/459 (52%), Gaps = 25/459 (5%)

Query: 18  VDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA 77
           + Q   P    ++++GCQMN YDS  +  +    G+E     + AD++++NTC IRE A 
Sbjct: 1   MTQPNKPHTVHIETFGCQMNEYDSELVRSLLRKAGFEFTEDRERADVMLMNTCAIRENAH 60

Query: 78  EKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLP 137
            KVY  L  ++ +K         L+V V GC+AQ   EE+  + P+V+V+VGP  Y +LP
Sbjct: 61  NKVYGHLAELKAVKEQ-----RPLVVGVLGCMAQNLKEELTEKQPLVDVLVGPDGYRQLP 115

Query: 138 ELLERARFGK------RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCT 191
            LL  A   +      R +  D S  + ++ +        R     A++ I  GCD FC+
Sbjct: 116 GLLTNALNAEEQGLARRGMAVDLSEYETYDDILP-----ERDCSSNAWIAIMRGCDNFCS 170

Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLL 251
           FCVVPYTRG E SR    ++ E    +  G  +ITLLGQNVN++R +  D     F+ L+
Sbjct: 171 FCVVPYTRGRERSRDPQGILREVEASVATGHTQITLLGQNVNSYRYEDWD-----FARLI 225

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
            +++E+ G+ R+R+T+ HP+D    L+ A      +  ++HLP+QSG+DRIL+ MNR ++
Sbjct: 226 LAVAEVPGVRRVRFTSPHPKDFPAALLDAVAGHPNICKHIHLPLQSGNDRILELMNRTYS 285

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
             EY  +   IR   P IA+++D I GF  ET+++F  T  +V+++ Y  A+ FKYS R 
Sbjct: 286 RKEYLDLAAHIRRRHPGIALTTDIICGFCSETEEEFLDTYRVVEEVQYHSAYVFKYSERK 345

Query: 372 GTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLV 429
            T  +    + V E VK ER+  L    R      N   +GQ + V++E   K    + +
Sbjct: 346 NTIAARKFPDDVPEAVKGERVSRLVDLQRPITARLNRELIGQTLPVMVEGDSKRSTDQWM 405

Query: 430 GRSPWLQSVVLNSKN--HNIGDIIKVRITDVKISTLYGE 466
           GR+     V+ N  +    +G I  V I D   + L G 
Sbjct: 406 GRTDTGVYVIWNKSDAPALLGSIQPVTILDGSAAVLMGR 444


>gi|308069953|ref|YP_003871558.1| hypothetical protein PPE_03202 [Paenibacillus polymyxa E681]
 gi|305859232|gb|ADM71020.1| Conserved hypothetical protein [Paenibacillus polymyxa E681]
          Length = 447

 Score =  401 bits (1030), Expect = e-109,   Method: Composition-based stats.
 Identities = 142/448 (31%), Positives = 245/448 (54%), Gaps = 21/448 (4%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDD-ADLIVLNTCHIREKAAEKVYSFLG 85
               + GC++N YD+  +  +F ++GYE+V+  +  AD+ ++NTC +     +K    + 
Sbjct: 4   VAFYTLGCKVNFYDTEAIWQLFKNEGYEQVDFDEQTADVYLINTCTVTNTGDKKSRQII- 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                    I+   D +V V GC AQ    EI+   P V++V+G Q   ++   ++  + 
Sbjct: 63  ------RRAIRRNPDAIVAVTGCYAQTSPAEIMD-IPGVDLVIGTQDRDKIIPFVQEIQE 115

Query: 146 GKRVVDTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            ++ V+   ++     FE + + D          AFL IQ+GC+ FCTFC++P++RG+  
Sbjct: 116 TRQPVNAVRNIMKTRVFEEMDVPD----FANHTRAFLKIQDGCNNFCTFCIIPWSRGLSR 171

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR  + ++ +AR+L+  G  EI L G +     G G D +    SDLL+ L +++GL R+
Sbjct: 172 SRDAASIIAQARQLVHAGYKEIVLTGIHTG---GYGDDMDNYDLSDLLWDLEKVEGLERI 228

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R ++     + + ++        L+ + H+P+Q+G D +LK M R++T  E+   +  IR
Sbjct: 229 RISSIEASQIDEKMLDVLNRSTKLVRHFHIPLQAGDDTVLKRMRRKYTTEEFYNKMLMIR 288

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              PD+AI++D IVGFPGETD+ FR   +L+ KIG+++   F YS R GTP + M +QVD
Sbjct: 289 KAMPDVAITTDVIVGFPGETDEMFRNGYELMKKIGFSEMHVFPYSKRSGTPAARMEDQVD 348

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE---KHGKEKGKLVGRSPWLQSVVL 440
           E+VK  R+  L +   + Q+++ +  VGQ++EV+ E   K  ++ G L G S     +V 
Sbjct: 349 EDVKNARVHELIQLSEQMQLAYAEKFVGQVLEVIPEVAPKGTEDSGILYGYSDNYIQLVF 408

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 +G + +V++T   I+   G+LV
Sbjct: 409 EGTEDMVGKVCRVKLTKAGINESEGQLV 436


>gi|281339290|gb|EFB14874.1| hypothetical protein PANDA_006744 [Ailuropoda melanoleuca]
          Length = 567

 Score =  401 bits (1030), Expect = e-109,   Method: Composition-based stats.
 Identities = 152/475 (32%), Positives = 246/475 (51%), Gaps = 47/475 (9%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ ++++YGCQMNV D+     +    GY R  ++ +AD+I+L TC IREKA + +++ L
Sbjct: 96  RKVYLETYGCQMNVNDTEIAWSILQKSGYLRTRNLQEADVILLVTCSIREKAEQTIWNRL 155

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            +++ LK  R++    L + + GC+A+   EEIL R  +V+++ GP  Y  LP LL  A 
Sbjct: 156 HQLKALKTKRLRSRVPLRIGILGCMAERLKEEILNREKMVDILAGPDAYRDLPRLLAVAE 215

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G++  +   S+++ +  +  V          +AF++I  GCD  C++C+VP+TRG E S
Sbjct: 216 SGQQAANVLLSLDETYADVMPVQTS---PSATSAFVSIMRGCDNMCSYCIVPFTRGRERS 272

Query: 205 RSLSQVVDEARKLIDN---------GVCEITLLGQNVNAW-----------------RGK 238
           R +  +++E RKL +          G+ E+TLLGQNVN++                 RG 
Sbjct: 273 RPVDSILEEVRKLSEQVKSCLGFCLGLKEVTLLGQNVNSFRDSSEVQFNNAVSTNLSRGF 332

Query: 239 GLDGEKC----TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP 294
             + +       F+ LL  +S I   +R+R+T+ HP+D  D +++   + D +   +HLP
Sbjct: 333 STNYKPKQGGLRFAHLLDKVSRIDPEMRIRFTSPHPKDFPDEVLQLIQERDNICKQIHLP 392

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
            QSGS R+L++M R ++   Y ++I  IR   P +++SSDFI GF GET++D   T+ L+
Sbjct: 393 AQSGSSRVLEAMRRGYSREAYVELIHHIRESIPGVSLSSDFIAGFCGETEEDHLQTVSLL 452

Query: 355 DKIGYAQAFSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQI 413
            ++ Y   F F YS R  T     + + V E VK  RL  L    RE+    N A VG  
Sbjct: 453 REVQYNMGFLFAYSMRQKTRAYHRLKDDVPEEVKLRRLEELITVFREEATKANMASVGCT 512

Query: 414 IEVLIEKHGKEKGK-LVGRSPWLQSVVLNSKN------------HNIGDIIKVRI 455
             VL+E   K     L GR+     V+                    GD + V++
Sbjct: 513 QLVLVEGVSKRSATDLCGRNDGNLKVIFPDVEMEDVNNSKVKVRAQPGDYVLVKV 567


>gi|30264381|ref|NP_846758.1| hypothetical protein BA_4535 [Bacillus anthracis str. Ames]
 gi|47529832|ref|YP_021181.1| hypothetical protein GBAA_4535 [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49187205|ref|YP_030457.1| hypothetical protein BAS4209 [Bacillus anthracis str. Sterne]
 gi|65321683|ref|ZP_00394642.1| COG0621: 2-methylthioadenine synthetase [Bacillus anthracis str.
           A2012]
 gi|165872059|ref|ZP_02216699.1| conserved hypothetical protein [Bacillus anthracis str. A0488]
 gi|167638687|ref|ZP_02396963.1| conserved hypothetical protein [Bacillus anthracis str. A0193]
 gi|170707478|ref|ZP_02897932.1| conserved hypothetical protein [Bacillus anthracis str. A0389]
 gi|177653235|ref|ZP_02935487.1| conserved hypothetical protein [Bacillus anthracis str. A0174]
 gi|190566951|ref|ZP_03019867.1| RNA modification enzyme, MiaB family [Bacillus anthracis
           Tsiankovskii-I]
 gi|227817086|ref|YP_002817095.1| RNA modification enzyme, MiaB family [Bacillus anthracis str. CDC
           684]
 gi|229600003|ref|YP_002868599.1| RNA modification enzyme, MiaB family [Bacillus anthracis str.
           A0248]
 gi|254736415|ref|ZP_05194121.1| RNA modification enzyme, MiaB family protein [Bacillus anthracis
           str. Western North America USA6153]
 gi|254750891|ref|ZP_05202930.1| RNA modification enzyme, MiaB family protein [Bacillus anthracis
           str. Vollum]
 gi|254757781|ref|ZP_05209808.1| RNA modification enzyme, MiaB family protein [Bacillus anthracis
           str. Australia 94]
 gi|30259039|gb|AAP28244.1| conserved hypothetical protein [Bacillus anthracis str. Ames]
 gi|47504980|gb|AAT33656.1| conserved hypothetical protein [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49181132|gb|AAT56508.1| conserved hypothetical protein [Bacillus anthracis str. Sterne]
 gi|164712190|gb|EDR17727.1| conserved hypothetical protein [Bacillus anthracis str. A0488]
 gi|167513535|gb|EDR88905.1| conserved hypothetical protein [Bacillus anthracis str. A0193]
 gi|170127722|gb|EDS96595.1| conserved hypothetical protein [Bacillus anthracis str. A0389]
 gi|172081517|gb|EDT66589.1| conserved hypothetical protein [Bacillus anthracis str. A0174]
 gi|190561942|gb|EDV15911.1| RNA modification enzyme, MiaB family [Bacillus anthracis
           Tsiankovskii-I]
 gi|227006018|gb|ACP15761.1| RNA modification enzyme, MiaB family [Bacillus anthracis str. CDC
           684]
 gi|229264411|gb|ACQ46048.1| RNA modification enzyme, MiaB family [Bacillus anthracis str.
           A0248]
          Length = 450

 Score =  401 bits (1030), Expect = e-109,   Method: Composition-based stats.
 Identities = 134/449 (29%), Positives = 235/449 (52%), Gaps = 21/449 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
                + GC++N Y++  +  +F   GYER      AD+ V+NTC +     +K    + 
Sbjct: 3   TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKADVYVINTCTVTNTGDKKSRQVIR 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R        +++  D ++ V GC AQ    EI+   P V++VVG Q   ++   +E  R 
Sbjct: 63  RA-------VRQNPDAVICVTGCYAQTSPAEIMA-IPGVDIVVGTQDREKMLGYIEEFRK 114

Query: 146 GKRVVDTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            ++ ++   ++     +E L +            A L IQEGC+ FCTFC++P+ RG+  
Sbjct: 115 ERQPINAVRNIMKTRVYEELDVP----YFTDRTRASLKIQEGCNNFCTFCIIPWARGLMR 170

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKGLVR 262
           SR   +V+ +A++L+D G  EI L G +     G G D +    + LL  + +E+ GL R
Sbjct: 171 SRDGKEVIKQAQQLVDAGYKEIVLTGIHTG---GYGEDIKDYNLAGLLRDMEAEVGGLKR 227

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LR ++     +SD +I+     +V++ +LH+P+QSGS+ +LK M R++T   +++ +DR+
Sbjct: 228 LRISSIEASQISDEVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRL 287

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           +   P +AI+SD IVGFPGET+++F  T + + +  +++   F YS R GTP + M +QV
Sbjct: 288 KEALPGLAITSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQV 347

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK---HGKEKGKLVGRSPWLQSVV 439
            E+VK +R+  L +   +    +     G+++E++ E+    G  +G  VG +     +V
Sbjct: 348 PEDVKNDRVHRLIELSNQLAKEYASQFEGEVLEIIPEEQFKEGDREGLYVGYTDNYLKIV 407

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG ++KV+I          + V
Sbjct: 408 FEGSEELIGKLVKVKIMKAGYPYNEAQFV 436


>gi|134299776|ref|YP_001113272.1| MiaB-like tRNA modifying protein YliG [Desulfotomaculum reducens
           MI-1]
 gi|238065335|sp|A4J5U4|RIMO_DESRM RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|134052476|gb|ABO50447.1| SSU ribosomal protein S12P methylthiotransferase [Desulfotomaculum
           reducens MI-1]
          Length = 444

 Score =  401 bits (1030), Expect = e-109,   Method: Composition-based stats.
 Identities = 145/448 (32%), Positives = 223/448 (49%), Gaps = 24/448 (5%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S GC  N+ DS  M  +     +   N+  +AD +++NTC   E A E+    +  +   
Sbjct: 8   SLGCPKNLVDSEVMLGLLRENNFTITNNEANADALIVNTCGFIESAKEESIRHIFELAQY 67

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK--- 147
           K      G    ++V GC+AQ   +E+L   P ++V++GP     + E++  A  GK   
Sbjct: 68  KER----GKCKALIVTGCLAQRYSKELLEEIPEIDVILGPGHVSNIVEVVNHALEGKDRH 123

Query: 148 -RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
            RV D  Y  ++   RL             TA++ I EGCD  C +C +P  RG   SR 
Sbjct: 124 TRVEDLLYIYDEHSPRLLSTP-------SYTAYVKIAEGCDNRCAYCAIPDIRGKFRSRP 176

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
           +  +  E + L++ GV EI L+ Q+     G  L GE      LL  L  I+GL  +R  
Sbjct: 177 IESIEAEVKDLVEKGVREIILIAQDTT-RYGLDLYGE-YRLDQLLERLGPIQGLQWIRLL 234

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
             +P   +D LIKA  +   +  Y+ LP+Q  ++ IL++M R  T  + R +I ++R+  
Sbjct: 235 YCYPNRFTDQLIKAMAENPNICKYIDLPMQHAANDILRAMKRPVTKQQARILIQKLRTEI 294

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           P I I + FIVGFPGET++ F+  +D ++++ + +A  F YS   GTP + M  Q+   +
Sbjct: 295 PGIVIRTSFIVGFPGETEEHFKELLDFMEEVKFDRAGVFTYSQEEGTPAAEMPNQIHGRI 354

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKH-GKEKGKLVGRS----PWLQS-VVL 440
           K ER     K  RE  +S N   +GQ IEV++E+   + KG   GRS    P +   V  
Sbjct: 355 KQERYHRAMKLQREISLSQNQKRIGQEIEVVVEEVTDQSKGVYTGRSSYDAPEIDGTVEF 414

Query: 441 -NSKNHNIGDIIKVRITDVKISTLYGEL 467
            +S+   IGD +KV+I       L GEL
Sbjct: 415 TSSRPLRIGDFVKVKINRALEYDLMGEL 442


>gi|242242851|ref|ZP_04797296.1| 2-methylthioadenine synthase [Staphylococcus epidermidis W23144]
 gi|242233693|gb|EES36005.1| 2-methylthioadenine synthase [Staphylococcus epidermidis W23144]
          Length = 451

 Score =  401 bits (1030), Expect = e-109,   Method: Composition-based stats.
 Identities = 134/436 (30%), Positives = 232/436 (53%), Gaps = 17/436 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
                + GC++N Y++  +  +F    YERV    +AD+ V+NTC +     +K    + 
Sbjct: 6   TVAFHTLGCKVNHYETEAIWQLFKDANYERVEFETNADVFVINTCTVTNTGDKKSRQIIR 65

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R        I++  D +V V GC AQ    EI+   P V++VVG Q  ++L + +++ + 
Sbjct: 66  RA-------IRQNPDAVVCVTGCYAQTSSAEIM-EIPGVDIVVGTQDRHKLLDYIQQFQE 117

Query: 146 GKRVVDT--DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            ++ ++   +      +E L +            A L IQEGC+ FCTFC++P+ RG+  
Sbjct: 118 ERQPINGVGNIMKNRTYEELEVP----YFTDRTRASLKIQEGCNNFCTFCIIPWARGLMR 173

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR   +VV++A +L+++G  EI L G +     G G D +    + LL  L  I+GL R+
Sbjct: 174 SRDPEKVVEQATQLVNSGYKEIVLTGIHTG---GYGQDLKNYNLAQLLRDLDTIEGLERI 230

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R ++     ++D +I   G+ + ++ +LH+P+QSGSD +LK M R++T   + + + ++ 
Sbjct: 231 RISSIEASQLTDEVIDVIGNSNKVVRHLHIPLQSGSDDVLKRMRRKYTMAHFSERLTKLH 290

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              PD+A++SD IVGFPGE++++F+ T D +    +++   F YSPR+GTP + M  Q+D
Sbjct: 291 QALPDLAVTSDVIVGFPGESEEEFQETYDFIVNHHFSELHVFPYSPRIGTPAARMDNQID 350

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
           E  K  R+  L     +    +      +++EV+ E+ G+E   LVG +     V     
Sbjct: 351 EETKNVRVHKLISLSNQLAKEYASKFEDEVLEVIPEEMGEEPHTLVGYADNYMKVRFEGD 410

Query: 444 NHNIGDIIKVRITDVK 459
           +  IG I+KV+I    
Sbjct: 411 DSLIGQIVKVKIVKAN 426


>gi|322689418|ref|YP_004209152.1| hypothetical protein BLIF_1234 [Bifidobacterium longum subsp.
           infantis 157F]
 gi|320460754|dbj|BAJ71374.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis 157F]
          Length = 480

 Score =  401 bits (1030), Expect = e-109,   Method: Composition-based stats.
 Identities = 160/454 (35%), Positives = 246/454 (54%), Gaps = 25/454 (5%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVN----SMDDADLIVLNTCHIREKAAEKVYS 82
           F + + GCQMNV+DS R+  +  + GY        + +D DL+VLNTC +RE AAE++Y 
Sbjct: 27  FHIHTLGCQMNVHDSERIAGVLEANGYVPATEDQINDNDLDLLVLNTCAVRENAAERMYG 86

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +GR   +K        +L + V GC+AQ + ++I   +P V+ V G +    LP+LL++
Sbjct: 87  TIGRFNRVKL----VRPNLQIAVGGCMAQLDRKKIADTAPWVSAVFGTKNIEDLPKLLDQ 142

Query: 143 ARF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
            R  GK  V     +     +L        R   +++++ I  GC+  CTFC+VP TRG 
Sbjct: 143 NRATGKAQVQVTEQLRQFPSQLPAA-----RASRISSWVAISVGCNNTCTFCIVPTTRGK 197

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E  R    ++DE R+ + +G  E+TLLGQNVN++ G G+ G++  FS LL +   I GL 
Sbjct: 198 EKDRRPGDILDEIRQCVADGAKEVTLLGQNVNSF-GYGI-GDRYAFSKLLRACGTIDGLE 255

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+T+ HP   +D +I A  +   +M  LH P+QSGSDRIL++M R + + ++  I+ R
Sbjct: 256 RVRFTSPHPAAFTDDVIAAMAETPNIMHQLHFPLQSGSDRILRAMRRSYRSAKFLDILGR 315

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           IR   PD  IS+D IVGFPGET++DF+ TMD+V +  ++ AF+F YSPR GTP + M EQ
Sbjct: 316 IREAMPDAQISTDIIVGFPGETEEDFQQTMDVVRQARFSSAFTFIYSPRPGTPAAAM-EQ 374

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK----HGKEKGKLVGRSPWLQS 437
           +  +V  +R   L     +          G+ +EV+I         +  ++ GR      
Sbjct: 375 IPRDVVQDRFDRLVALQEQITEENLATFEGRDVEVMITGKLGKKDTDTHRVTGREKTGVL 434

Query: 438 VVLNSKN----HNIGDIIKVRITDVKISTLYGEL 467
           V +          IGD +   +T      L  + 
Sbjct: 435 VHIGVPEGEPVPEIGDFVTATVTHAGRHNLLADP 468


>gi|166365636|ref|YP_001657909.1| hypothetical protein MAE_28950 [Microcystis aeruginosa NIES-843]
 gi|238066406|sp|B0JJS5|RIMO_MICAN RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|166088009|dbj|BAG02717.1| hypothetical protein MAE_28950 [Microcystis aeruginosa NIES-843]
          Length = 437

 Score =  401 bits (1030), Expect = e-109,   Method: Composition-based stats.
 Identities = 133/447 (29%), Positives = 217/447 (48%), Gaps = 19/447 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
              +   GC+ N  DS  M  +    GY   N  + AD +++NTC   + A E+    L 
Sbjct: 6   TIAISHLGCEKNRIDSEHMLGLLAKAGYPVDNDEELADYVIVNTCSFIQAAREESVRTLV 65

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +               ++++GC+AQ   +E+L   P    +VG   Y ++ E++ER   
Sbjct: 66  ELAEANKK---------IIISGCMAQHFQDELLTELPEAVAIVGTGDYQKIVEIVERVET 116

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G+RV +         +        Y       A+L + EGCD  C FC++P  RG + SR
Sbjct: 117 GERVKEVSADPTFIADENLP---RYRTTSEGVAYLRVAEGCDYRCAFCIIPQLRGDQRSR 173

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           S+  +V EAR+L   GV E+ L+ Q +    G  L GE    ++LL +L E+  +  +R 
Sbjct: 174 SIESIVAEARQLASQGVQELILISQ-ITTNYGLDLYGEPK-LAELLRALGEVD-IPWIRV 230

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
             ++P  ++  +I+A  +   ++PYL LP+Q     IL+ MNR         II+RI+  
Sbjct: 231 HYAYPTGLTPKVIEAIRETPNVLPYLDLPLQHSHPDILRGMNRPWQGRVNDGIIERIKQA 290

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P+  + + FIVGFPGET++ F   ++ V +  +     F +S   GT   ++ + V + 
Sbjct: 291 IPNAVLRTTFIVGFPGETEEHFSHLLEFVKRHEFDHVGVFTFSAEEGTAAFDLPDPVPQA 350

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVVLN 441
           +  ER   L    +      N A +GQ ++VLIE+   E G+L+GR    SP +  +V  
Sbjct: 351 IMDERRERLMLTQQPISERKNQAYIGQTVDVLIEQENPETGELIGRSARFSPEVDGLVYV 410

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
           +    +G I++VRIT      LYGE+V
Sbjct: 411 TGEAILGAIVQVRITAADTYDLYGEIV 437


>gi|78357421|ref|YP_388870.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
 gi|123741239|sp|Q30YS1|MIAB_DESDG RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|78219826|gb|ABB39175.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 464

 Score =  401 bits (1030), Expect = e-109,   Method: Composition-based stats.
 Identities = 170/464 (36%), Positives = 255/464 (54%), Gaps = 29/464 (6%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + F + ++GCQMNV DS  +     ++G+ +V   + A + ++NTC +R+K  +KVYS L
Sbjct: 4   RTFHIMTFGCQMNVNDSDWLARALEARGFTQVPEHEAA-IYIINTCSVRDKPEQKVYSLL 62

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GRIR       K   ++ V V GCVAQ  G+   +R   V +V G       P+ +ER  
Sbjct: 63  GRIRR----ETKNRRNVTVCVGGCVAQQIGKGFFKRFSQVRLVFGTDGAASAPQAIERLV 118

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
                  +     ++F       G  N +  V+A++ I +GC+ FC +C+VPYTRG + S
Sbjct: 119 QEPHARISLLDFSEEFPERDA--GWENGEVPVSAYVNIMQGCNNFCAYCIVPYTRGRQKS 176

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           RS + V+DE R L+ NG  EITLLGQNVN+  G    G+  TF+ LL+ ++ I GL RLR
Sbjct: 177 RSSAAVLDECRTLVGNGAREITLLGQNVNS-YGLDPHGDGTTFARLLHDVAAIPGLERLR 235

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           + T HP+D++  +I+A G L  L P +HLP+QSGSDR+LK+M R++    Y  I+ R+++
Sbjct: 236 FMTPHPKDIAGEVIEAFGALKNLCPRVHLPLQSGSDRVLKAMGRKYDMARYMDIVTRLKA 295

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           VRPDI I+SD IVGFPGET+ DF  T++ +  + + Q+FSF YS R GT    +  ++  
Sbjct: 296 VRPDIQITSDLIVGFPGETEADFEQTLEAMRTVPFVQSFSFIYSDRPGTRAEMLPGKLSR 355

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG---------------KEKGK-- 427
             K  RL+ LQ+   E   +   A VG+ + VL E                  +E G+  
Sbjct: 356 EEKTARLVRLQEVQNEYSEAALQAMVGKTVMVLFESPSPKSAAGSGTDAQNAAEESGRTA 415

Query: 428 --LVGRSPW--LQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
               GR     + +V L +     G I+ V +T  +  +L GE 
Sbjct: 416 SSWQGRDEHGFILNVHLPAPADLYGKIMPVTVTAARKHSLTGEP 459


>gi|189439139|ref|YP_001954220.1| (dimethylallyl)adenosine tRNA methylthiotransferase
           [Bifidobacterium longum DJO10A]
 gi|227547646|ref|ZP_03977695.1| possible tRNA 2-methylthioadenine synthetase [Bifidobacterium
           longum subsp. infantis ATCC 55813]
 gi|239621252|ref|ZP_04664283.1| RNA modification enzyme [Bifidobacterium longum subsp. infantis
           CCUG 52486]
 gi|312132572|ref|YP_003999911.1| miab [Bifidobacterium longum subsp. longum BBMN68]
 gi|229890432|sp|B3DQX6|MIAB_BIFLD RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|189427574|gb|ACD97722.1| 2-methylthioadenine synthetase [Bifidobacterium longum DJO10A]
 gi|227211901|gb|EEI79797.1| possible tRNA 2-methylthioadenine synthetase [Bifidobacterium
           longum subsp. infantis ATCC 55813]
 gi|239515713|gb|EEQ55580.1| RNA modification enzyme [Bifidobacterium longum subsp. infantis
           CCUG 52486]
 gi|311773512|gb|ADQ03000.1| MiaB [Bifidobacterium longum subsp. longum BBMN68]
          Length = 484

 Score =  401 bits (1030), Expect = e-109,   Method: Composition-based stats.
 Identities = 160/454 (35%), Positives = 247/454 (54%), Gaps = 25/454 (5%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVN----SMDDADLIVLNTCHIREKAAEKVYS 82
           F + + GCQMNV+DS R+  +  + GY        + +D DL+VLNTC +RE AAE++Y 
Sbjct: 31  FHIHTLGCQMNVHDSERIAGVLEANGYVPATEDQINDNDLDLLVLNTCAVRENAAERMYG 90

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +GR   +K        +L + V GC+AQ + ++I   +P V+ V G +    LP+LL++
Sbjct: 91  TIGRFNRVKL----VRPNLQIAVGGCMAQLDRKKIADTAPWVSAVFGTKNIEDLPKLLDQ 146

Query: 143 ARF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
            R  GK  V     +     +L        R   +++++ I  GC+  CTFC+VP TRG 
Sbjct: 147 NRATGKAQVQVTEQLRQFPSQLPAA-----RASRISSWVAISVGCNNTCTFCIVPTTRGK 201

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E  R    ++DE R+ + +G  E+TLLGQNVN++ G G+ G++  FS LL +   I GL 
Sbjct: 202 EKDRRPGDILDEIRQCVADGAKEVTLLGQNVNSF-GYGI-GDRYAFSKLLRACGTIDGLE 259

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+T+ HP   +D +I A  +   +M  LH P+QSGSDRIL++M R + + ++  I+ R
Sbjct: 260 RVRFTSPHPAAFTDDVIAAMAETPNIMHQLHFPLQSGSDRILRAMRRSYRSAKFLDILGR 319

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           IR+  PD  IS+D IVGFPGET++DF+ TMD+V +  ++ AF+F YSPR GTP + M EQ
Sbjct: 320 IRAAMPDAQISTDIIVGFPGETEEDFQQTMDVVRQARFSSAFTFIYSPRPGTPAAAM-EQ 378

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK----HGKEKGKLVGRSPWLQS 437
           +  +V  +R   L     +          G+ +EV+I         +  ++ GR      
Sbjct: 379 IPRDVVQDRFDRLVALQEQITEENLATFEGRDVEVMITGKLGKKDTDTHRVTGREKTGVL 438

Query: 438 VVLNSKN----HNIGDIIKVRITDVKISTLYGEL 467
           V +          IGD +   +T      L  + 
Sbjct: 439 VHIGVPEGEPVPEIGDFVTATVTHAGRHNLLADP 472


>gi|322691385|ref|YP_004220955.1| hypothetical protein BLLJ_1196 [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|320456241|dbj|BAJ66863.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           longum JCM 1217]
          Length = 480

 Score =  400 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 160/454 (35%), Positives = 247/454 (54%), Gaps = 25/454 (5%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVN----SMDDADLIVLNTCHIREKAAEKVYS 82
           F + + GCQMNV+DS R+  +  + GY        + +D DL+VLNTC +RE AAE++Y 
Sbjct: 27  FHIHTLGCQMNVHDSERIAGVLEANGYVPATEDQINDNDLDLLVLNTCAVRENAAERMYG 86

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +GR   +K        +L + V GC+AQ + ++I   +P V+ V G +    LP+LL++
Sbjct: 87  TIGRFNRVKL----VRPNLQIAVGGCMAQLDRKKIADTAPWVSAVFGTKNIEDLPKLLDQ 142

Query: 143 ARF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
            R  GK  V     +     +L        R   +++++ I  GC+  CTFC+VP TRG 
Sbjct: 143 NRATGKAQVQVTEQLRQFPSQLPAA-----RASRISSWVAISVGCNNTCTFCIVPTTRGK 197

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E  R    ++DE R+ + +G  E+TLLGQNVN++ G G+ G++  FS LL +   I GL 
Sbjct: 198 EKDRRPGDILDEIRQCVADGAKEVTLLGQNVNSF-GYGI-GDRYAFSKLLRACGTIDGLE 255

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+T+ HP   +D +I A  +   +M  LH P+QSGSDRIL++M R + + ++  I+ R
Sbjct: 256 RVRFTSPHPAAFTDDVIAAMAETPNIMHQLHFPLQSGSDRILRAMRRSYRSAKFLDILGR 315

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           IR+  PD  IS+D IVGFPGET++DF+ TMD+V +  ++ AF+F YSPR GTP + M EQ
Sbjct: 316 IRAAMPDAQISTDIIVGFPGETEEDFQQTMDVVRQARFSSAFTFIYSPRPGTPAAAM-EQ 374

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK----HGKEKGKLVGRSPWLQS 437
           +  +V  +R   L     +          G+ +EV+I         +  ++ GR      
Sbjct: 375 IPRDVVQDRFDRLVALQEQITEENLATFEGRDVEVMITGKLGKKDTDTHRVTGREKTGVL 434

Query: 438 VVLNSKN----HNIGDIIKVRITDVKISTLYGEL 467
           V +          IGD +   +T      L  + 
Sbjct: 435 VHIGVPEGEPVPEIGDFVTATVTHAGRHNLLADP 468


>gi|172039350|ref|YP_001805851.1| CHP1125-containing protein [Cyanothece sp. ATCC 51142]
 gi|238065329|sp|B1WUD1|RIMO_CYAA5 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|171700804|gb|ACB53785.1| CHP1125-containing protein [Cyanothece sp. ATCC 51142]
          Length = 437

 Score =  400 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 134/447 (29%), Positives = 219/447 (48%), Gaps = 19/447 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
              V   GC+ N  DS  M  +   QGY    + + AD +++NTC   ++A E+    L 
Sbjct: 6   TISVSHLGCEKNRIDSEHMLGILAQQGYSIDANEELADYVIVNTCSFIQEAREESVRTLV 65

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +               ++++GC+AQ   E++L   P    +VG   Y ++ E+++R   
Sbjct: 66  ELAEANKK---------IIISGCMAQHFQEQLLEELPEAVALVGTGDYQKIAEVIQRVET 116

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G+RV +   +     + ++     Y       A+L + EGCD  C FC++P+ RG + SR
Sbjct: 117 GERVTEVSQNPTFVADEMTP---RYRTTNEAVAYLRVAEGCDYRCAFCIIPHLRGNQRSR 173

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           S+  +V EA++L D GV EI L+ Q +    G  L GE    ++LL +L ++  +  +R 
Sbjct: 174 SIESIVTEAQQLADQGVQEIILISQ-ITTNYGLDLYGEPK-LAELLRALGKVD-IPWIRI 230

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
             ++P  ++  +I A  D   ++PYL LP+Q     ILK+MNR         II+R++  
Sbjct: 231 HYAYPTGLTPKVIDAIRDTPNILPYLDLPLQHSHPAILKAMNRPWQGQVNDNIIERLKQS 290

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P+  + + FIVGFPGET++ F   ++ V +  +     F +SP   TP   M  QV   
Sbjct: 291 IPNAILRTTFIVGFPGETEEHFEHLINFVQRHEFDHVGVFTFSPEEETPAYQMPNQVPSE 350

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVLN 441
           +   R   L +  +      N  CVGQ +EVLIE+      + +GRS    P +  VV  
Sbjct: 351 IAQARRNYLMEIQQPIAAKKNQKCVGQTVEVLIEQENPTTQEYIGRSIRFAPEVDGVVYV 410

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                +  II V+ITD  +  LYG+++
Sbjct: 411 EGEGQLNSIIPVKITDADVYDLYGKVI 437


>gi|325106271|ref|YP_004275925.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Pedobacter saltans DSM
           12145]
 gi|324975119|gb|ADY54103.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Pedobacter saltans DSM
           12145]
          Length = 473

 Score =  400 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 151/456 (33%), Positives = 246/456 (53%), Gaps = 13/456 (2%)

Query: 19  DQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAE 78
            +    ++ +V+SYGCQMN  DS  +  +    G+   +   +AD++ +NTC IRE A  
Sbjct: 25  SKSNTGRKLYVESYGCQMNFSDSEIVASILSDAGFVTTSDYKEADVVFINTCSIRENAEI 84

Query: 79  KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPE 138
           +V + L      K        D+L+ V GC+A+    + L    IV++VVGP  Y  LP 
Sbjct: 85  RVRNRLKEFGASKVR----KPDMLIGVLGCMAERLKSKFLEEEKIVDLVVGPDAYRDLPN 140

Query: 139 LLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
           L+ +   G + V+   S E+ +  ++ V        G+TAF++I  GCD  C+FCVVP+T
Sbjct: 141 LIGKVDEGNKAVNVLLSREETYADINPVRLN---SNGITAFISIMRGCDNMCSFCVVPFT 197

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC---TFSDLLYSLS 255
           RG E SR    ++ EA+ L + G  E+TLLGQNV++++ K  D E      F+ LL  ++
Sbjct: 198 RGRERSRDPHSIIKEAQDLFNAGYREVTLLGQNVDSYKWKASDEENAESVNFAQLLEKVA 257

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
            +   +R+R++TSHP+D++D ++      + +  Y+HLPVQSG+ R+L+ MNR +    Y
Sbjct: 258 LVHPDLRVRFSTSHPKDITDDVLYTMAKYENICKYIHLPVQSGNSRVLEVMNRTYDREWY 317

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
            + I+ IR + P+ AIS+D I GF  ET+++ + T+ + + + Y  A+ F YS R GTP 
Sbjct: 318 MEKINAIRRILPECAISTDIITGFCTETEEEHQETLSMQEFVKYDFAYMFSYSERPGTPA 377

Query: 376 S-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSP 433
           +    + V E VK  RL  +    +          +G++ +VLIE   ++  +   GR+ 
Sbjct: 378 AKKFTDDVPEAVKKRRLEEVIALQQTHGYYRLQQHIGKVEKVLIEGFSRKSKEDYCGRND 437

Query: 434 WLQSVVLN-SKNHNIGDIIKVRITDVKISTLYGELV 468
               VV   S  +  G  + V I     +TL G++V
Sbjct: 438 QNCMVVFPVSDAYKPGQYVNVLIERATSATLIGKVV 473


>gi|329314252|gb|AEB88665.1| RNA modification enzyme, MiaB family [Staphylococcus aureus subsp.
           aureus T0131]
          Length = 448

 Score =  400 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 138/436 (31%), Positives = 229/436 (52%), Gaps = 17/436 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
                + GC++N Y++  +  +F    YERV+   +AD+ V+NTC +     +K    + 
Sbjct: 3   TVAFHTLGCKVNHYETEAIWQLFKEANYERVDFEANADVFVINTCTVTNTGDKKSRQIIR 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R        I++  D ++ V GC AQ    EI+   P V+VVVG Q  ++L   ++    
Sbjct: 63  RA-------IRQNPDAVICVTGCYAQTSSAEIM-EIPGVDVVVGTQDRHKLLGYIDEFHK 114

Query: 146 GKRVVDT--DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            ++ ++   +     K+E L +            A L IQEGC+ FCTFC++P+ RG+  
Sbjct: 115 ERQPINGVGNIMKNRKYEELDVP----YFTDRTRASLKIQEGCNNFCTFCIIPWARGLMR 170

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR   +VV++A +L+++G  EI L G +     G G D +    + LL  L  I GL R+
Sbjct: 171 SRDPEKVVEQATQLVNSGYKEIVLTGIHTG---GYGQDLKDYNLAQLLRDLETINGLERI 227

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R ++     ++D +I        ++ +LH+P+QSGSD +LK M R++T   + + + ++ 
Sbjct: 228 RISSIEASQLTDEVIDVLERSTKVVRHLHIPLQSGSDTVLKRMRRKYTMDRFSERLTKLH 287

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              PD+A++SD IVGFPGET+ +F+ T D + K  +++   F YSPR+GTP + M +Q+D
Sbjct: 288 KALPDLAVTSDVIVGFPGETEAEFQETYDFIVKHKFSELHVFPYSPRIGTPAARMDDQID 347

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
           E +K ER+  L     +    +       ++EV+ E+ G  +G LVG +     V     
Sbjct: 348 EEIKNERVHKLITLSNQLGKLYASKFDQDVLEVIPEEQGDTEGTLVGYADNYMKVQFEGD 407

Query: 444 NHNIGDIIKVRITDVK 459
              IG I+KV+IT   
Sbjct: 408 ESLIGQIVKVKITQAN 423


>gi|297566522|ref|YP_003685494.1| RNA modification enzyme, MiaB family [Meiothermus silvanus DSM
           9946]
 gi|296850971|gb|ADH63986.1| RNA modification enzyme, MiaB family [Meiothermus silvanus DSM
           9946]
          Length = 440

 Score =  400 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 159/444 (35%), Positives = 243/444 (54%), Gaps = 19/444 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +  + +YGCQMN YD+  ++    S G E V++  +AD +++NTC +R K  EKV S LG
Sbjct: 2   KTHIITYGCQMNEYDTHLVKSELASLGAEFVDTWQEADFVLVNTCAVRGKPVEKVRSLLG 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +R  K+       DL+V + GC+AQ E  + + R   V++++GP         + +A  
Sbjct: 62  ELRKEKDK-----RDLMVGMMGCLAQLEEGQQIARKFGVDILLGPGALTE----IGKALE 112

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            K         E+    L     G      ++AF++I  GC+  CT+C+VP TRG E+SR
Sbjct: 113 AKSRFWELSFREELAHHLPPAPQG-----QLSAFVSIIRGCNHHCTYCIVPTTRGPEVSR 167

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
               ++ E  +L   GV E+TLLGQNVN+  G    G    F++LL  + +I G+ R+++
Sbjct: 168 HPDLILREIEQLKAAGVVEVTLLGQNVNS-YGNDQPGFPK-FAELLRMVGQI-GIPRIKF 224

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
           TTSHP + +D +I+A  +   +  Y+HLPVQSGS+R+L+ M R +    Y   I  IR  
Sbjct: 225 TTSHPVNFTDEVIRAMAETPQVCEYIHLPVQSGSNRVLRRMGREYRREWYLDRIRAIREA 284

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P++ +S+D IVGFPGET++DF+ T+ L D++GY  A+ F YSPR GTP     + +   
Sbjct: 285 MPEVVLSTDIIVGFPGETEEDFQETLSLYDQVGYDSAYMFIYSPRPGTPSYKHFQDLPRE 344

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSV-VLNSKN 444
           VK ERL  L +K ++     N   VG+ +EVL+    K+     G S     V VL S+ 
Sbjct: 345 VKVERLQRLIEKQKQWSYKQNQRWVGRTLEVLVRGAAKDDSYAEGHSRGNHPVLVLASQA 404

Query: 445 HNIGDIIKVRITDVKISTLYGELV 468
              G + +V +       L GE+V
Sbjct: 405 PRPG-LYQVVVKQATPHMLLGEVV 427


>gi|149198156|ref|ZP_01875203.1| hypothetical protein LNTAR_15882 [Lentisphaera araneosa HTCC2155]
 gi|149138758|gb|EDM27164.1| hypothetical protein LNTAR_15882 [Lentisphaera araneosa HTCC2155]
          Length = 452

 Score =  400 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 159/455 (34%), Positives = 254/455 (55%), Gaps = 17/455 (3%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           +  ++  +K+YGCQMN  DS  +E      GYE      DAD+I+LNTC +R++A  K  
Sbjct: 1   MSKEKVLIKTYGCQMNDRDSEAVEMDLLKSGYEITTEEKDADVIILNTCSVRDQAERKAL 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             +G +  L+         L V V GC+AQ+  ++I+ ++  VN V G    +++PEL+E
Sbjct: 61  GKVGSLIKLRRK----NPKLQVGVIGCMAQSRADDIVEKNAHVNFVAGTDQLHKIPELIE 116

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           +++  +  +       D  ERL     G      + A + I  GC+++CT+C+VP+TRG 
Sbjct: 117 KSKDTEDALIETGLSRDIMERLDNHPEG-----QMNASVAIMRGCNEYCTYCIVPFTRGQ 171

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGEKCTFSDLLYSLS 255
           E SR+++ ++ E + L + GV EI  LGQN+ A+      R +  + E   F+ LL   +
Sbjct: 172 EKSRTIASIIAEVKALSEKGVREIMYLGQNITAYGLIEARRDRTFNKEVSPFAALLRETA 231

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
           +I+G+ R+R+T+ H R  +D LI        +   +H P+QSGS+R+LK M RRHTA E+
Sbjct: 232 KIEGIKRIRFTSPHARYFNDDLIDTIAAEPKICRAIHFPLQSGSNRLLKVMRRRHTAEEF 291

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
              I++++     I  ++D IVGFPGET++DF+AT D+ ++I + Q F F+YS R  TP 
Sbjct: 292 LSWINKMKERIDGITFTTDLIVGFPGETEEDFKATRDMCNEIDFDQQFIFRYSTRKNTPA 351

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRSPW 434
           + M  Q+DE  K ER   L K L E+    N+  VG I E+++E   K    K  GR+  
Sbjct: 352 AQMPNQLDEETKIERNQILLKDLEERLTHKNEQRVGTIEEIMVEGVSKRNDDKWTGRTTN 411

Query: 435 LQSVVLNS-KNHNIGDIIKVRITDVKISTLYGELV 468
            + V+ +  ++  +GD+I ++I       LYG  V
Sbjct: 412 YKIVIFDPQEDVKVGDLINIKIERATQHALYGSYV 446


>gi|163847968|ref|YP_001636012.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Chloroflexus
           aurantiacus J-10-fl]
 gi|222525848|ref|YP_002570319.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Chloroflexus
           sp. Y-400-fl]
 gi|229890474|sp|A9WHB1|MIAB_CHLAA RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|163669257|gb|ABY35623.1| RNA modification enzyme, MiaB family [Chloroflexus aurantiacus
           J-10-fl]
 gi|222449727|gb|ACM53993.1| RNA modification enzyme, MiaB family [Chloroflexus sp. Y-400-fl]
          Length = 466

 Score =  400 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 158/452 (34%), Positives = 241/452 (53%), Gaps = 27/452 (5%)

Query: 19  DQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAE 78
           DQ    +R++V + GCQMN+ DS R+E      GY      +DA  IVLN+C +R  A E
Sbjct: 16  DQTPRERRYYVWTVGCQMNISDSERLEAALQGVGYSPATRPEDASFIVLNSCSVRASAEE 75

Query: 79  KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEIL-RRSPIVNVVVGPQTYYRLP 137
           ++   LG +  +K    ++  D  +V+ GC+       I   + P+V+  V P     + 
Sbjct: 76  RILGKLGELVRVK----RQHPDTRIVLWGCMVGPNNRSIFADQLPMVDHFVSPSAVDEVV 131

Query: 138 ELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197
            L           +  Y++++    L + D  +     V+  + IQ GC+  C++CV+P 
Sbjct: 132 AL---------APNPIYTLDE--PALPVRDWSHP---PVSVHVPIQYGCNMTCSYCVIPL 177

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257
            RG E SR L+++V+E R+++  G  EITLLGQ V++W G  L G     +DLL ++   
Sbjct: 178 RRGRERSRPLAEIVEEVRRIVARGAKEITLLGQIVDSW-GHDLPGRPE-LADLLEAVDPT 235

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
            GL+RLR+ TSHP  M+D LI+    L    P ++LPVQ+GSDR+LK M R +T   Y+ 
Sbjct: 236 PGLLRLRFLTSHPAWMTDRLIETVARLPRCQPEINLPVQAGSDRVLKLMRRGYTVARYKT 295

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
           +I RIR+  PDI++++D IVG PGET+DDFR TMDL  +IG+ +     +S R GT  + 
Sbjct: 296 LIARIRAAIPDISLTTDIIVGHPGETEDDFRQTMDLCAEIGFDKVHIAAFSARPGTRAAE 355

Query: 378 MLEQ----VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSP 433
             +     V   VK ER   L++   +         +GQ +EVL+E   K  GK  GR+P
Sbjct: 356 QEQDPALAVPPAVKEERRRRLEQLQEQIATERMARFLGQTVEVLVEGESK--GKWRGRTP 413

Query: 434 WLQSVVLNSKNHNIGDIIKVRITDVKISTLYG 465
             + V  +      G ++ V+IT     +L G
Sbjct: 414 GNRLVFFSHPADLTGQLVPVKITATSPWSLQG 445


>gi|291516737|emb|CBK70353.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bifidobacterium longum
           subsp. longum F8]
          Length = 484

 Score =  400 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 160/454 (35%), Positives = 247/454 (54%), Gaps = 25/454 (5%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVN----SMDDADLIVLNTCHIREKAAEKVYS 82
           F + + GCQMNV+DS R+  +  + GY        + +D DL+VLNTC +RE AAE++Y 
Sbjct: 31  FHIHTLGCQMNVHDSERIAGVLEANGYVPATEDQINDNDLDLLVLNTCAVRENAAERMYG 90

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +GR   +K        +L + V GC+AQ + ++I   +P V+ V G +    LP+LL++
Sbjct: 91  TIGRFNRVKL----VRPNLQIAVGGCMAQLDRKKIADTAPWVSAVFGTKNIEDLPKLLDQ 146

Query: 143 ARF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
            R  GK  V     +     +L        R   +++++ I  GC+  CTFC+VP TRG 
Sbjct: 147 NRATGKAQVQVTEQLRQFPSQLPAA-----RASRISSWVAISVGCNNTCTFCIVPTTRGK 201

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E  R    ++DE R+ + +G  E+TLLGQNVN++ G G+ G++  FS LL +   I GL 
Sbjct: 202 EKDRRPGDILDEIRQCVADGAKEVTLLGQNVNSF-GYGI-GDRYAFSKLLRACGTIDGLE 259

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+T+ HP   +D +I A  +   +M  LH P+QSGSDRIL++M R + + ++  I+ R
Sbjct: 260 RVRFTSPHPAAFTDDVIAAMAETPNIMHQLHFPLQSGSDRILRAMRRSYRSAKFLDILGR 319

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           IR+  PD  IS+D IVGFPGET++DF+ TMD+V +  ++ AF+F YSPR GTP + M EQ
Sbjct: 320 IRAAMPDAQISTDIIVGFPGETEEDFQQTMDVVRQARFSSAFTFIYSPRPGTPAAAM-EQ 378

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK----HGKEKGKLVGRSPWLQS 437
           +  +V  +R   L     +          G+ +EV+I         +  ++ GR      
Sbjct: 379 IPRDVVQDRFDRLVALQEQITEENLATFEGRDVEVMITGKLGKKDTDTHRVTGREKTGVL 438

Query: 438 VVLNSKN----HNIGDIIKVRITDVKISTLYGEL 467
           V +          IGD +   +T      L  + 
Sbjct: 439 VHIGVPEGEPVPEIGDFVTATVTHAGRHNLLADP 472


>gi|323464328|gb|ADX76481.1| conserved hypothetical protein [Staphylococcus pseudintermedius
           ED99]
          Length = 449

 Score =  400 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 130/436 (29%), Positives = 231/436 (52%), Gaps = 17/436 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
                + GC++N Y++  +  +F    Y RV+   +AD+ V+NTC +     +K    + 
Sbjct: 3   TVAFHTLGCKVNHYETEAIWQLFKDAEYNRVDFEQNADVFVINTCTVTNTGDKKSRQIIR 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R        I++  D ++ V GC AQ    EI+   P V++VVG Q  ++L + ++  + 
Sbjct: 63  RA-------IRQNPDAVICVTGCYAQTSSAEIM-EIPGVDIVVGTQDRHKLLDYIDTYQD 114

Query: 146 GKRVVD--TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            ++ ++  ++      +E L +            A L IQEGC+ FCTFC++P+ RG+  
Sbjct: 115 ERQPINGVSNIMKNRTYEELDVP----YFTDRTRASLKIQEGCNNFCTFCIIPWARGLMR 170

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR   +V+++A +L+++G  EI L G +     G G D +    + LL  L  + GL R+
Sbjct: 171 SRDPKKVIEQATQLVNSGYKEIVLTGIHTG---GYGQDLKDYNLAQLLRDLETVDGLERI 227

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R ++     ++D +I+       ++ +LH+P+QSGSD +LK M R+++   + + I ++ 
Sbjct: 228 RISSIEASQLTDEVIEVLQQSQKVVRHLHIPLQSGSDSVLKRMRRKYSMAHFSERIQKLH 287

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           +  P +A++SD IVGFPGET+ +F+ T D +    +++   F YSPR+GTP + M +Q+D
Sbjct: 288 AALPGLAVTSDVIVGFPGETEAEFQETYDFIVNHHFSELHVFPYSPRIGTPAARMDDQID 347

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
           E +K ER+  L +   +   ++       ++EV+ E+ G + G LVG +     V     
Sbjct: 348 EEIKNERVHKLIELSNQLAKTYASKFENDVLEVIPEEKGSQDGLLVGYADNYMKVEFVGD 407

Query: 444 NHNIGDIIKVRITDVK 459
              IG I KV++T   
Sbjct: 408 ESLIGQICKVKVTQAG 423


>gi|319892634|ref|YP_004149509.1| MiaB family protein, possibly involved in tRNA or rRNA modification
           [Staphylococcus pseudintermedius HKU10-03]
 gi|317162330|gb|ADV05873.1| MiaB family protein, possibly involved in tRNA or rRNA modification
           [Staphylococcus pseudintermedius HKU10-03]
          Length = 449

 Score =  400 bits (1028), Expect = e-109,   Method: Composition-based stats.
 Identities = 130/436 (29%), Positives = 231/436 (52%), Gaps = 17/436 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
                + GC++N Y++  +  +F    Y RV+   +AD+ V+NTC +     +K    + 
Sbjct: 3   TVAFHTLGCKVNHYETEAIWQLFKDAEYNRVDFEQNADVFVINTCTVTNTGDKKSRQIIR 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R        I++  D ++ V GC AQ    EI+   P V++VVG Q  ++L + ++  + 
Sbjct: 63  RA-------IRQNPDAVICVTGCYAQTSSAEIM-EIPGVDIVVGTQDRHKLLDYIDTYQD 114

Query: 146 GKRVVD--TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            ++ ++  ++      +E L +            A L IQEGC+ FCTFC++P+ RG+  
Sbjct: 115 ERQPINGVSNIMKNRTYEELDVP----YFTDRTRASLKIQEGCNNFCTFCIIPWARGLMR 170

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR   +V+++A +L+++G  EI L G +     G G D +    + LL  L  + GL R+
Sbjct: 171 SRDPKKVIEQATQLVNSGYKEIVLTGIHTG---GYGQDLKDYNLAQLLRDLETVDGLERI 227

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R ++     ++D +I+       ++ +LH+P+QSGSD +LK M R+++   + + I ++ 
Sbjct: 228 RISSIEASQLTDEVIEVLQQSQKVVRHLHIPLQSGSDSVLKRMRRKYSMAHFSERIQKLH 287

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           +  P +A++SD IVGFPGET+ +F+ T D +    +++   F YSPR+GTP + M +Q+D
Sbjct: 288 AALPGLAVTSDVIVGFPGETEAEFQETYDFIVNHHFSELHVFPYSPRIGTPAARMDDQID 347

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
           E +K ER+  L +   +   ++       ++EV+ E+ G + G LVG +     V     
Sbjct: 348 EEIKNERVHKLIELSNQLAKTYASKFENDVLEVIPEEKGSQDGLLVGYADNYMKVEFVGD 407

Query: 444 NHNIGDIIKVRITDVK 459
              IG I KV++T   
Sbjct: 408 ESLIGQICKVKVTQAG 423


>gi|328950938|ref|YP_004368273.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Marinithermus hydrothermalis DSM 14884]
 gi|328451262|gb|AEB12163.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Marinithermus hydrothermalis DSM 14884]
          Length = 445

 Score =  400 bits (1028), Expect = e-109,   Method: Composition-based stats.
 Identities = 157/443 (35%), Positives = 244/443 (55%), Gaps = 17/443 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R  + ++GCQMN YD+  ++    S G E V+++ DA+ +++NTC +R K  EKV S LG
Sbjct: 7   RAHLITFGCQMNEYDTHLVQSELASLGAEFVDTIQDANFVLVNTCAVRGKPVEKVKSLLG 66

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           ++R  K         LLV + GCVAQ E  + + +   V++++GP    ++ + LE    
Sbjct: 67  KLRKEKER-----RPLLVGMMGCVAQLEEGQEIAKKFDVDILLGPGAITQIAKALESH-- 119

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                  D   +  F            K  ++AF++I  GC+  CT+C+VP TRG E+SR
Sbjct: 120 -------DKFWDLTFRDEVNTYVPPPPKGTLSAFVSIIRGCNHHCTYCIVPKTRGPEVSR 172

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
               +++E  +L   GV E+TLLGQNVN+  GK   G   +F++LL  + +I G+ R+++
Sbjct: 173 HPDLILEEIERLKAAGVLEVTLLGQNVNS-YGKDQPGYP-SFAELLRMVGQI-GIPRIKF 229

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
           TTSHP + +D +I+A  +   +  Y+HLPVQSGS+R+L+ M R +    Y   +  I+  
Sbjct: 230 TTSHPVNFTDDIIQAIAETPQVCRYIHLPVQSGSNRVLRRMGREYRREWYLDRVRAIKEA 289

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            PD+ +S+D IVGFPGET+ DF  T+ L D++GY  A+ F YSPR GTP +   + +   
Sbjct: 290 LPDVVLSTDIIVGFPGETEADFEETLTLYDEVGYDHAYMFIYSPRPGTPSARHFQDLPRE 349

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445
           VK  RL  L +K +E     N    G+++EVL+    KE G   G       V++ +   
Sbjct: 350 VKVARLQRLIEKQKEWSYRKNKRWEGRVVEVLVRGTAKEDGYAEGHDRGNHPVLVPAAQA 409

Query: 446 NIGDIIKVRITDVKISTLYGELV 468
               + +V I       LYGE+V
Sbjct: 410 PEPGLYQVEIKQATPHLLYGEVV 432


>gi|116073885|ref|ZP_01471147.1| hypothetical protein RS9916_35582 [Synechococcus sp. RS9916]
 gi|116069190|gb|EAU74942.1| hypothetical protein RS9916_35582 [Synechococcus sp. RS9916]
          Length = 513

 Score =  400 bits (1028), Expect = e-109,   Method: Composition-based stats.
 Identities = 130/465 (27%), Positives = 222/465 (47%), Gaps = 27/465 (5%)

Query: 14  VSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIR 73
            +    Q   P        GC+ N  D+  M  +    GY   +  +DA+++V+NTC   
Sbjct: 53  ATTASAQAARP-TVAFAHLGCEKNRVDTEHMLGLLSEAGYGVSSDENDANVVVVNTCSFI 111

Query: 74  EKA-AEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT 132
           + A  E V + +G     K           +++AGC+AQ   +E+L   P    +VG   
Sbjct: 112 QDAREESVRTLVGLAEQGKE----------LIIAGCLAQHFQDELLESLPEAKAIVGTGD 161

Query: 133 YYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTF 192
           Y  + ++L+R   G+RV     +     +        Y       A+L + EGCD  C F
Sbjct: 162 YQHIVDVLKRVEAGERVKQVSENPTFVGDENLP---RYRTTGEAVAYLKVAEGCDYRCAF 218

Query: 193 CVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLY 252
           C++P+ RG + SR +  +V EA +L   GV E+ L+ Q +    G  L G K   +DLL 
Sbjct: 219 CIIPHLRGDQRSRPIESIVAEAHQLAAQGVQELILISQ-ITTNYGLDLYG-KPRLADLLR 276

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
           +L E++ +  +R   ++P  ++  ++ A+ ++  ++PYL LP+Q     +L++MNR   A
Sbjct: 277 ALGEVE-IPWIRVHYAYPTGLTPDVLAAYREVPNVLPYLDLPLQHSHPDVLRAMNRPWQA 335

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
               +++D+IR   PD  + +  IVGFPGET++ F      +++  +     F +SP  G
Sbjct: 336 DVNERLLDQIREQLPDAVLRTTLIVGFPGETEEQFEHLASFIERQRFDHVGVFTFSPEDG 395

Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR- 431
           TP + + + V E V   R   L    +    + N + VG+ ++VLIE+H    G+++GR 
Sbjct: 396 TPAATLPDHVPEEVAIARKDKLMGLQQPISAAGNASWVGRTVDVLIEQHNPTTGEMIGRC 455

Query: 432 ---SPWLQSVVLNSKNHN-----IGDIIKVRITDVKISTLYGELV 468
              +P +   VL     N      G ++ V IT   +  L G +V
Sbjct: 456 ARFAPEVDGEVLVQPGDNGIQAGPGTMVPVLITGADVYDLTGRIV 500


>gi|78777940|ref|YP_394255.1| tRNA-i(6)A37 modification enzyme MiaB [Sulfurimonas denitrificans
           DSM 1251]
 gi|123768587|sp|Q30PR1|MIAB_SULDN RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|78498480|gb|ABB45020.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Sulfurimonas
           denitrificans DSM 1251]
          Length = 435

 Score =  400 bits (1028), Expect = e-109,   Method: Composition-based stats.
 Identities = 159/447 (35%), Positives = 242/447 (54%), Gaps = 20/447 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ F+++ GC MN  DS  M       +GYE  N +  ADLI++NTC +REK   K++S 
Sbjct: 5   KKLFIETLGCAMNSRDSEHMIAELSEKEGYETTNDLSSADLIIINTCSVREKPVAKLFSE 64

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LG     K    K      + V GC A   GEEI++R+P V+ V+G +   ++ E+L + 
Sbjct: 65  LGVFNKRKKEGAK------IGVCGCTASHLGEEIIKRAPYVSFVLGARNVSKISEVLHKE 118

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           R  +  ++ D S     +          R     A++ I  GCDK CT+C+VP TRG EI
Sbjct: 119 RAVEIDINYDESEFAFNDF---------RTSPYKAYINISIGCDKSCTYCIVPKTRGEEI 169

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE--KCTFSDLLYSLSEIKGLV 261
           S     ++ EA+K +  G  EI LLGQNVN   G+   GE  K +FS+LL  LS+I  L 
Sbjct: 170 SIPTELILREAQKAVKGGAKEIFLLGQNVN-NYGRRFSGEHEKVSFSELLRRLSKIDALE 228

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+T+ HP  M D  I+       +   +H+P+QSGS ++LK M R +T   +   + +
Sbjct: 229 RIRFTSPHPFHMDDEFIEEFSSNPKICKSMHMPLQSGSSKVLKDMKRGYTKEWFLNRVQK 288

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R++ PD++IS+D IV FPGE+D+DF  T+ ++ ++ + Q FSFKYSPR  T   +    
Sbjct: 289 LRAMSPDVSISTDIIVAFPGESDEDFEETLSIMREVKFDQIFSFKYSPRPETEAEHFTNI 348

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           VDE+V + RL  LQ          N   +G+I  V  E   ++     GRS     + + 
Sbjct: 349 VDEDVASSRLTTLQNLAVNILDEKNKTHLGKIYRVYFEDLNQDY-YASGRSDNNLLIKVK 407

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
             +  +G+   V+ITD+  + L GE+V
Sbjct: 408 GSDELLGEFRDVKITDIGRTILSGEIV 434


>gi|312880310|ref|ZP_07740110.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Aminomonas paucivorans
           DSM 12260]
 gi|310783601|gb|EFQ23999.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Aminomonas paucivorans
           DSM 12260]
          Length = 446

 Score =  400 bits (1028), Expect = e-109,   Method: Composition-based stats.
 Identities = 161/444 (36%), Positives = 237/444 (53%), Gaps = 11/444 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + F +  YGCQMN YD  R+       G+  V   D+AD ++  TC IR+KA +KV S L
Sbjct: 2   RSFKIDVYGCQMNAYDGDRLRTALSGAGWTEVQGEDEADAVLFVTCSIRDKAEQKVASEL 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR R             +V + GC+AQ  GE+I RR P V ++ GP+   R+PE L R  
Sbjct: 62  GRYR-----PGGGRKAPVVALLGCMAQRLGEDIPRRFPWVRLLAGPRHLGRVPEALGRCL 116

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
              ++    +  ED      +          + A++TI  GCD FC +C+VPY RG   S
Sbjct: 117 EDDQLR--VFLDEDPRALEDLRFPPQVTPGSIRAYVTIAHGCDHFCAYCIVPYVRGRFQS 174

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R    ++ E R L D GV EITLLGQNVN +     DG   +F  LL  ++E+ G++R+R
Sbjct: 175 RDPEAILREVRCLADRGVREITLLGQNVNRFGVDRSDG--FSFPRLLREVAEVPGVLRVR 232

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           Y TSHP D S+ L++   +   + P L+LPVQSGSDRIL +M R +    YR+ +  +R 
Sbjct: 233 YATSHPVDFSEELVRVMAEHPRVCPALNLPVQSGSDRILAAMGRGYDGASYRRSVGLLRE 292

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             PD  +++D IVGFPGET++DFR ++ L++++ + Q  S  YS R GT   ++   +D+
Sbjct: 293 RVPDAGLTTDLIVGFPGETEEDFRESLSLLEELRFDQVHSAAYSVRPGTRAESLPGHLDQ 352

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLNSK 443
             +  RL  +           N+  VG+++ VL E    K +G   GR+P  + V+    
Sbjct: 353 ATRMRRLGEVNDLQSRIAREINETYVGRVLPVLAEGPAPKGEGFWQGRTPQDKVVLFPG- 411

Query: 444 NHNIGDIIKVRITDVKISTLYGEL 467
               G+ I VRI   +   L GE+
Sbjct: 412 PATAGEEILVRIVSAETWYLRGEV 435


>gi|302392275|ref|YP_003828095.1| 30S ribosomal protein S12P methylthiotransferase [Acetohalobium
           arabaticum DSM 5501]
 gi|302204352|gb|ADL13030.1| SSU ribosomal protein S12P methylthiotransferase [Acetohalobium
           arabaticum DSM 5501]
          Length = 442

 Score =  400 bits (1028), Expect = e-109,   Method: Composition-based stats.
 Identities = 133/449 (29%), Positives = 220/449 (48%), Gaps = 18/449 (4%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
             + + GC  N  D+  M  +    G++ VN    A+++++NTC     A E+    + +
Sbjct: 4   VGLVNLGCAKNQVDAEIMLGLIDEAGFKLVNDYSQAEVLIVNTCGFIGDAKEESIDTILQ 63

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           +   K    K      ++V GC+AQ   EE+    P ++ ++G   + ++ E+++    G
Sbjct: 64  LAEYKKDNCKS-----LIVTGCLAQRHLEELEAEIPEIDGILGTGNFDKIVEVIKETLSG 118

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           K   +      +   RL     G +     TA+L I EGC+  C++CV+P  RG   SR 
Sbjct: 119 KSRAEVGNPEFNYHNRLPQKRIGQD----YTAYLKIAEGCNNCCSYCVIPELRGKLHSRE 174

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
           +  +V EA +L D GV E+ ++ Q++    G  L GE     +LL  L ++KG+   R  
Sbjct: 175 IEDIVTEAVELADQGVKEVNIIAQDIT-KYGSDLYGEP-RLVELLTELMKVKGIKWFRLL 232

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
            ++P D SD LI+     + +  Y+ LP+Q   D+I   M RR T  +   +I ++R   
Sbjct: 233 YAYPNDFSDELIEVMAKHERICNYIDLPIQHVDDKIRSKMRRRGTKEDILSLIRKLRDRI 292

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           P I+I +  IVGFPGET+D+F+  +D V +  + +   F YS   GT  + M +QV E +
Sbjct: 293 PGISIRTSLIVGFPGETEDEFKNLLDFVQQARFDRLGVFTYSREEGTAAAEMPDQVAEEI 352

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK--HGKEKGKLVGRS----PWLQS-VV 439
           K ER   +    +   +  N   +G+ +EVLIE+    +++   VGR+    P +   V 
Sbjct: 353 KEERYERIMDLQQRISLERNQEWIGREVEVLIEEIQQNEDQKLAVGRTQQDAPEIDGLVY 412

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
           +       G+ IKVRI D     L GE V
Sbjct: 413 VEDVKAEPGEFIKVRIKDAYEYDLIGERV 441


>gi|305433013|ref|ZP_07402169.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Campylobacter coli JV20]
 gi|304443714|gb|EFM36371.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Campylobacter coli JV20]
          Length = 433

 Score =  400 bits (1028), Expect = e-109,   Method: Composition-based stats.
 Identities = 159/449 (35%), Positives = 244/449 (54%), Gaps = 18/449 (4%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKV 80
           +  ++ F+++ GC MNV DS  M         Y     + +ADLI++NTC +REK   K+
Sbjct: 1   MSSKKLFIQTLGCAMNVRDSEHMIAELTQKDNYTLTEDIKEADLILINTCSVREKPVHKL 60

Query: 81  YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140
           +S +G    +K S  K      + V GC A   G EI RR+P V+ V+G +   ++ + +
Sbjct: 61  FSEVGGFEKVKKSGAK------IGVCGCTASHLGSEIFRRAPYVDFVLGARNISKITQAV 114

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
              +F    VD DY   +          G  R     +++ I  GCDK CT+C+VP+TRG
Sbjct: 115 NTPKF--MSVDIDYDESEFA-------FGDFRNSIYKSYINISIGCDKHCTYCIVPHTRG 165

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKG 259
            EIS  L+ +  EA+K +D G  EI LLGQNVN +  +  +  +K  FSDLL  LS I+G
Sbjct: 166 DEISIPLNIIYKEAQKAVDKGAKEIFLLGQNVNNYGKRFRNEHKKMDFSDLLEELSTIEG 225

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           L R+R+T+ HP  M D  ++       +   +H+P+QSGS +ILK+M R +T   Y    
Sbjct: 226 LERIRFTSPHPLHMDDKFLEVFAKNPKVCKSMHMPLQSGSSQILKAMKRGYTKEWYLDRA 285

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            ++R + P+++IS+D IV FPGE+D DF  TM++++K+ + Q FSFKYS R  T  + M 
Sbjct: 286 LKLRELCPNVSISTDIIVAFPGESDKDFEETMEVLEKVRFEQMFSFKYSKRPLTKAATMP 345

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV 439
            Q+DE + + RL  LQ +  E           +  +VL E+  +    +VGR+     V 
Sbjct: 346 NQIDEEIASNRLSTLQARHNEILDDIVKKQENKTFKVLFEEL-RAGNAIVGRTDNNFLVQ 404

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
           +      +G   +V+IT+ K   LYGE++
Sbjct: 405 VEGSEELLGTFKEVKITNAKRMVLYGEII 433


>gi|82751179|ref|YP_416920.1| hypothetical protein SAB1448c [Staphylococcus aureus RF122]
 gi|82656710|emb|CAI81137.1| conserved hypothetical protein [Staphylococcus aureus RF122]
          Length = 448

 Score =  400 bits (1028), Expect = e-109,   Method: Composition-based stats.
 Identities = 139/436 (31%), Positives = 230/436 (52%), Gaps = 17/436 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
                + GC++N Y++  +  +F    YERV+   +AD+ V+NTC +     +K    + 
Sbjct: 3   TVAFHTLGCKVNHYETEAIWQLFKEANYERVDFEANADVFVINTCTVTNTGDKKSRQIIR 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R        I++  D ++ V GC AQ    EI+   P V+VVVG Q  ++L   ++  R 
Sbjct: 63  RA-------IRQNPDAVICVTGCYAQTSSAEIM-EIPGVDVVVGTQDRHKLLGYIDEFRK 114

Query: 146 GKRVVDT--DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            ++ ++   +     K+E L +            A L IQEGC+ FCTFC++P+ RG+  
Sbjct: 115 ERQPINGVGNIMKNRKYEELDVP----YFTDRTRASLKIQEGCNNFCTFCIIPWARGLMR 170

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR   +VV++A +L+++G  EI L G +     G G D +    + LL  L  I GL R+
Sbjct: 171 SRDPEKVVEQATQLVNSGYKEIVLTGIHTG---GYGQDLKDYNLAQLLRDLEMINGLERI 227

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R ++     ++D +I        ++ +LH+P+QSGSD +LK M R++T   + + + ++ 
Sbjct: 228 RISSIEASQLTDEVIDVLERSTKVVRHLHIPLQSGSDTVLKRMRRKYTMDRFSERLTKLH 287

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              PD+A++SD IVGFPGET+ +F+ T D + K  +++   F YSPR+GTP + M +Q+D
Sbjct: 288 KALPDLAVTSDVIVGFPGETEAEFQETYDFIVKHKFSELHVFPYSPRIGTPAARMDDQID 347

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
           E +K ER+  L     +    +       ++EV+ E+ G  +G LVG +     V     
Sbjct: 348 EEIKNERVHKLITLSNQLGKLYASKFDQDVLEVIPEEQGDTEGTLVGYADNYMKVQFEGD 407

Query: 444 NHNIGDIIKVRITDVK 459
              IG I+KV+IT   
Sbjct: 408 ESLIGQIVKVKITQAN 423


>gi|323698031|ref|ZP_08109943.1| RNA modification enzyme, MiaB family [Desulfovibrio sp. ND132]
 gi|323457963|gb|EGB13828.1| RNA modification enzyme, MiaB family [Desulfovibrio desulfuricans
           ND132]
          Length = 450

 Score =  400 bits (1027), Expect = e-109,   Method: Composition-based stats.
 Identities = 173/447 (38%), Positives = 252/447 (56%), Gaps = 12/447 (2%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +F + ++GCQMNV+DS  +     S+G+E     DDA + +LNTC +R+K  +KVYS LG
Sbjct: 4   KFHITTFGCQMNVHDSQWLTRALESRGWEETG-EDDAQVYILNTCSVRDKPEQKVYSELG 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R+     +  K    +   V GCVAQ  G     R P V +V G       P  LER   
Sbjct: 63  RVA----AHCKRDESVFAAVGGCVAQQVGRGFFERFPFVRLVFGSDGIAGAPNALERIAA 118

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G             +E     +          AF+ I +GCD FC +C+VPYTRG + SR
Sbjct: 119 GSDERVALLDFVTLYEERERPETPAAPDNTRQAFVNIMQGCDNFCAYCIVPYTRGRQKSR 178

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           +   ++DE R L+DNGV EITLLGQNVN++ G    G   +F+ LL +++ I GL RLR+
Sbjct: 179 TPDAILDECRSLVDNGVREITLLGQNVNSF-GLDKGGTGVSFAQLLRAVAAIPGLDRLRF 237

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
           TTSHP+D++  +I+A G+L+ L P LHLP+Q+GSDR+LK+M R++    Y +I+D +++ 
Sbjct: 238 TTSHPKDIAGEVIRAFGELENLCPSLHLPMQAGSDRVLKAMRRKYDMKRYLEIVDGLKAA 297

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
           RPDI++++D IVGFPGET++DF+ T+ +V+ +G+  +FSFKYS R G    NM  +V   
Sbjct: 298 RPDISLTTDLIVGFPGETEEDFKETLRMVELVGFESSFSFKYSDRPGVAAVNMEPKVPAE 357

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK----EKGKLVGRSPWLQSVVLN 441
             AERLL LQ              VG   +  IE   +    +     GR P  + V ++
Sbjct: 358 EAAERLLRLQTLQNNITRKCLKNLVGVETDAFIEGLSRMQEGDALSWKGRDPAGRIVNVS 417

Query: 442 --SKNHNIGDIIKVRITDVKISTLYGE 466
                  +G ++ VRI + K  +L GE
Sbjct: 418 VAESGDLVGRMVPVRIVEAKKHSLVGE 444


>gi|254457437|ref|ZP_05070865.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Campylobacterales
           bacterium GD 1]
 gi|207086229|gb|EDZ63513.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Campylobacterales
           bacterium GD 1]
          Length = 433

 Score =  400 bits (1027), Expect = e-109,   Method: Composition-based stats.
 Identities = 159/450 (35%), Positives = 248/450 (55%), Gaps = 20/450 (4%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++ F+++ GC MN  DS  M       +GYE ++   +ADLI++NTC +REK   K++
Sbjct: 1   MSKKLFIETLGCAMNSRDSEHMIAQLTEKEGYEAISDFREADLILINTCSVREKPVSKLF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S LG     K           + V GC A   GEEI++R+P VN V+G +   ++ E+L 
Sbjct: 61  SELGIFNKKKK------PGAKIGVCGCTASHLGEEIIKRAPYVNFVLGARNVSKITEVLH 114

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           + +  +  ++ D S E  F+          R     AF+ I  GCDK CT+C+VP TRG 
Sbjct: 115 KDKAVEIDINYDES-EFAFDDF--------RTSPYKAFINISIGCDKACTYCIVPKTRGD 165

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE--KCTFSDLLYSLSEIKG 259
           EIS   + ++ EA + +D+G  EI LLGQNVN   G+   GE  K  FS+LL  LS+I+G
Sbjct: 166 EISIPDALIIREAERAVDSGAKEIFLLGQNVN-NYGRRFSGEHEKVNFSELLRRLSKIEG 224

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           L RLR+T+ HP  M D  I+       +   +H+P+QSGS ++LK M R ++   +   +
Sbjct: 225 LERLRFTSPHPFHMDDEFIEEFASNPKICKSMHMPLQSGSTKVLKDMKRGYSKEWFLNRV 284

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
           +++R+  P ++IS+D IV FPGE+D+DF  ++D++ ++ + Q FSFKYS R  T   +  
Sbjct: 285 EKLRAECPQVSISTDIIVAFPGESDEDFEDSLDVMRQVRFNQIFSFKYSARPETEAEHFT 344

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV 439
             VDE V ++RL  LQ    E     N   +G+   V  E+  K+   + GRS     + 
Sbjct: 345 NTVDEEVASDRLTALQSLNTEIVDEINATSLGKTYRVYFEELIKDY-FVSGRSDNNIVIK 403

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELVV 469
           +   +  +G+   V+IT +  + L GE+V 
Sbjct: 404 VKGSDELLGEFRDVKITSIGRTILTGEVVA 433


>gi|297624625|ref|YP_003706059.1| RNA modification enzyme, MiaB family [Truepera radiovictrix DSM
           17093]
 gi|297165805|gb|ADI15516.1| RNA modification enzyme, MiaB family [Truepera radiovictrix DSM
           17093]
          Length = 444

 Score =  400 bits (1027), Expect = e-109,   Method: Composition-based stats.
 Identities = 164/442 (37%), Positives = 249/442 (56%), Gaps = 15/442 (3%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
             V ++GCQMN YD+  +     + G++ V++  DA+LI+LNTC +R K  EKV S LG 
Sbjct: 3   VHVITHGCQMNEYDTHTILSELVAGGHQIVDTPADAELIILNTCAVRGKPVEKVISLLGE 62

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
            R  K +    G DL V + GC+AQ E  + L +   V+++VGP     + + +E     
Sbjct: 63  FRKQKLA----GRDLTVGMMGCLAQLEEGQALAKKFGVDILVGPGAITDILKAIEAVETR 118

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
                +    +D    L+           +T FLTI  GC+  CT+C+VP TRG E+SRS
Sbjct: 119 GESFWSLDFKDDLHSYLTPPP------NTLTGFLTIMRGCNHHCTYCIVPQTRGPEVSRS 172

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
           L  ++ EAR +   GV EI LLGQNVN+  G G   +  +F++LL  ++   G+ R+++T
Sbjct: 173 LESIMHEARAMQAAGVQEIYLLGQNVNS-YGLGRP-DLPSFAELLRLVAA-TGIPRVKFT 229

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
           TSHP + +  +I A  + D +  Y+HLPVQSGSDR+L+ M R +    Y +II  I++  
Sbjct: 230 TSHPMNFTSDVIDAMAECDNVCKYIHLPVQSGSDRVLRRMAREYRRARYLEIIAEIKAKI 289

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           PD+ IS+D IVGFPGET++DF AT+ L D++G+  A+ F YS R GTP     + +   V
Sbjct: 290 PDVVISTDIIVGFPGETEEDFEATLTLYDEVGFDHAYMFMYSARPGTPSYKHFKDLPREV 349

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHN 446
           K ERL  L ++ +      N   VG+ + VL+++   +   LVG S    +V++  +   
Sbjct: 350 KTERLGRLIERQKYWSNRRNARWVGRNLRVLVKEVATDGQYLVGHSDQNHTVLVPKEQVR 409

Query: 447 -IGDIIKVRITDVKISTLYGEL 467
            +G + +VRI      TLYG +
Sbjct: 410 TLG-LHEVRIDSATPHTLYGTV 430


>gi|260437149|ref|ZP_05790965.1| RNA modification enzyme, MiaB family [Butyrivibrio crossotus DSM
           2876]
 gi|292810461|gb|EFF69666.1| RNA modification enzyme, MiaB family [Butyrivibrio crossotus DSM
           2876]
          Length = 439

 Score =  400 bits (1027), Expect = e-109,   Method: Composition-based stats.
 Identities = 138/449 (30%), Positives = 231/449 (51%), Gaps = 17/449 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC  N+ DS  M  +   +GYE  ++ ++AD+IV+NTC     A E+  + + 
Sbjct: 2   KLLFISLGCDKNLVDSEMMMGLLHDRGYEFTDNEEEADIIVINTCGFINDAKEESINTIL 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +   K + +K      ++VAGC+ +    EIL+  P ++ +VG   + ++ ++++    
Sbjct: 62  EMAKYKENNLK-----ALIVAGCLVERYKNEILQELPEIDAIVGTTAFDKICDVVDDVLA 116

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            K+  +    +E   +             G  ++L I EGCDK CT+C +P  RG   S 
Sbjct: 117 DKKHNE----LESINKMCRPDVKRIITTGGYYSYLKIAEGCDKHCTYCSIPMIRGAYRSV 172

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            + ++V EA  L DNGV E+ ++ Q +    GK L GEK    +LL+ L +I G+  +R 
Sbjct: 173 PMDELVKEAEYLADNGVKELIIVAQEIT-VYGKDLYGEKK-LPELLHRLCKIPGIQWIRL 230

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
              +P +++D LI+       +  Y+ +P+Q  SD+ILK+M RR    E R II ++R  
Sbjct: 231 LYCYPEEITDELIETIRTEKKICHYIDMPIQHASDKILKAMGRRTNNVELRNIISKLRKE 290

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            PDI + +  I GFPGET++D +  +D +D++ + +   F YSP   T  +++  QVDE 
Sbjct: 291 IPDICLRTTLITGFPGETEEDHQILLDFIDEMEFDRLGVFTYSPEEDTKAASLDNQVDEE 350

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVLN 441
           VK  R   + +  +E  +  ++  VG+ IEV+IE    ++   VGRS    P +   V  
Sbjct: 351 VKLCRKDEIMELQQEISMDKSERLVGKEIEVIIEGKASDEDVYVGRSYMDAPSVDGYVFI 410

Query: 442 SKNHNI--GDIIKVRITDVKISTLYGELV 468
           +    +  GD  KVRI       L G+L+
Sbjct: 411 NSEEELMSGDFAKVRIVKAMEYDLIGDLI 439


>gi|322421215|ref|YP_004200438.1| MiaB-like tRNA modifying enzyme YliG [Geobacter sp. M18]
 gi|320127602|gb|ADW15162.1| MiaB-like tRNA modifying enzyme YliG [Geobacter sp. M18]
          Length = 448

 Score =  400 bits (1027), Expect = e-109,   Method: Composition-based stats.
 Identities = 138/456 (30%), Positives = 238/456 (52%), Gaps = 23/456 (5%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + ++  + S GC  N+ D+  M      + YE       AD+IV+NTC   ++A ++   
Sbjct: 5   IKEKVSLVSLGCPKNLVDAEVMLGYLSKEAYEVTTDEMQADIIVVNTCSFIKEAKQESID 64

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-E 141
            +  + + K     +    L++V GC+ Q   EE+ +  P V++ +G   Y R+ E++ E
Sbjct: 65  TILDLADRK----HDARCKLLIVTGCLPQRYQEELAKELPEVDIFIGTGDYPRIAEIIAE 120

Query: 142 RARFGKRVV---DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
           +   G ++    D ++   D+  RL             TA+L I EGC   C +CV+P  
Sbjct: 121 KKTTGNQLCYTGDPNFVYNDELPRLQSSPH-------YTAYLKIAEGCSNNCAYCVIPAL 173

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258
           RG   SR+ + +++EAR L+D GV E+ L+ Q++ A  GK L  ++ +   L+  L++++
Sbjct: 174 RGALRSRAFATLMNEARALVDAGVKELNLIAQDITA-YGKDLP-DQPSLELLVRELAKLE 231

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           GL  +R   ++P  ++D LI+   +   +  YL LP+Q  +D +L  M RR    + R +
Sbjct: 232 GLKWIRLLYAYPDGVTDSLIELIKNEPKVCKYLDLPIQHIADPVLSRMKRRSGEADIRAL 291

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           I ++R   PDIAI +  IVGFPGET++DF+  +  V++  + +   F YS   GTP + M
Sbjct: 292 IAKLRKEIPDIAIRTSLIVGFPGETNEDFKKLLQFVEETRFDRLGVFCYSREEGTPAAEM 351

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-----KGKLVGRSP 433
            +QV E +K ER   L +         N   V    +VL+E + +E     KG+   ++P
Sbjct: 352 PDQVSERIKRERHKKLMRTQARVSFKHNRTLVDSEEDVLVEGYSEETELLLKGRSSRQAP 411

Query: 434 WLQS-VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            +   V + + N N+GDI++++ITD     L GE++
Sbjct: 412 DVDGLVYITAGNANVGDIVRLKITDSSDYDLIGEII 447


>gi|295698304|ref|YP_003602959.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Candidatus Riesia
           pediculicola USDA]
 gi|291157316|gb|ADD79761.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Candidatus Riesia
           pediculicola USDA]
          Length = 445

 Score =  400 bits (1027), Expect = e-109,   Method: Composition-based stats.
 Identities = 170/446 (38%), Positives = 270/446 (60%), Gaps = 9/446 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ ++K++GC MN YDS ++ D+F   + Y    +  +AD+I+LNTC +REKA EKV+  
Sbjct: 6   KKIYIKTWGCDMNKYDSSKIIDIFFKKKKYSLAKTDTEADIILLNTCSVREKAQEKVFHQ 65

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK ++I+    L++ V GCVA    + IL+R+P V+++ GP+T + LPE++   
Sbjct: 66  LGRWKKLKKNKIE----LILCVGGCVASQMNKSILKRAPYVDIIFGPKTIHLLPEMIRSF 121

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
              +R +    +++  F            ++ +++ ++I EGC+K C+FC+VP+TRG E 
Sbjct: 122 EKSRRKI---INIDSNFRNEKFQKNHETIRKDISSLISIIEGCNKKCSFCIVPFTRGKEF 178

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR L++++ E + L+  G  EI LLGQNVNA+R    +G+   FS L+  +S I G+ R+
Sbjct: 179 SRPLNEILIEIKNLVSEGCREIHLLGQNVNAYRYVQKNGKIYDFSKLIQKISLINGVKRI 238

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           +++T+HP   +  +I  +  +  L+ Y+H+PVQSGSD IL+ M R +T   Y++II +IR
Sbjct: 239 KFSTNHPNHFTQDVIDLYSTISQLVDYVHIPVQSGSDEILRKMRRPYTIERYKKIIKKIR 298

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
            VRPDI I SDFIVGFPGET +DF  T+ LV +I +  +FSF YS R GT  S + +  +
Sbjct: 299 EVRPDILIGSDFIVGFPGETKEDFLKTIQLVKEIDFDVSFSFMYSSRPGTEASLLRDDTN 358

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVLNS 442
            + K  RL  LQ  +  Q +  N   V Q  ++L+    + +  KLVG S   + V+   
Sbjct: 359 GHEKRNRLYFLQNLIERQIIEHNKRMVNQTQKILVLSKDQNDPNKLVGFSNKNRKVIFYG 418

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
               IG++I V+IT    + LYG  +
Sbjct: 419 SKEMIGNLIDVKITHFYKNKLYGRAI 444


>gi|75906864|ref|YP_321160.1| hypothetical protein Ava_0641 [Anabaena variabilis ATCC 29413]
 gi|123758912|sp|Q3MFH1|RIMO_ANAVT RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|75700589|gb|ABA20265.1| SSU ribosomal protein S12P methylthiotransferase [Anabaena
           variabilis ATCC 29413]
          Length = 440

 Score =  400 bits (1027), Expect = e-109,   Method: Composition-based stats.
 Identities = 133/447 (29%), Positives = 213/447 (47%), Gaps = 19/447 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
              +   GC+ N  D+  M  +    GY    + + AD +++NTC   E A E+    L 
Sbjct: 6   TIAISHLGCEKNRIDTEHMLGLLVKAGYGVDTNEELADYVIVNTCSFIESAREESVKTLV 65

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +               +V+ GC+AQ    ++L   P    VVG   Y+++  ++ERA  
Sbjct: 66  ELAEANKK---------IVITGCMAQHFQTQLLEELPEAVAVVGTGDYHKIVNVIERAEQ 116

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G+RV  T  S +  +              GV A+L + EGCD  C FC++P+ RG + SR
Sbjct: 117 GERV--TLVSAKPTYIADETTPRYRTTTEGV-AYLRVAEGCDYRCAFCIIPHLRGNQRSR 173

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           ++  +V EA +L+  GV EI L+ Q +    G  + G K   ++LL +L +I  +  +R 
Sbjct: 174 TIESIVAEAEQLVAQGVQEIILISQ-ITTNYGLDIYG-KPKLAELLRALGKIN-VPWIRM 230

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
             ++P  ++  +I A  +   ++PYL LP+Q     +L+SMNR        +II+R++  
Sbjct: 231 HYAYPTGLTPDVIAAIQETPNVLPYLDLPLQHSHSEVLRSMNRPWQGRVNDEIIERLKIA 290

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P   + + FIVGFPGET+  F   +  V +  +     F +S   GTP   +  Q+ + 
Sbjct: 291 IPGAVLRTTFIVGFPGETEAQFEHLLQFVQRHEFDHVGVFTFSAEEGTPAYKLSNQLPQE 350

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVVLN 441
           V  ER   L    +      N   VG+ +EVLIE+   E GKL+GR    SP +   V  
Sbjct: 351 VMDERRDRLMALQQPISWRKNQQEVGKTVEVLIEQENPESGKLIGRSGRFSPEVDGQVYV 410

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                +G II V+I       L+G++V
Sbjct: 411 DGEAKLGTIIPVKIHSADEYDLFGQVV 437


>gi|86151526|ref|ZP_01069740.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Campylobacter jejuni
           subsp. jejuni 260.94]
 gi|315124005|ref|YP_004066009.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Campylobacter jejuni
           subsp. jejuni ICDCCJ07001]
 gi|85841155|gb|EAQ58403.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Campylobacter jejuni
           subsp. jejuni 260.94]
 gi|315017727|gb|ADT65820.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Campylobacter jejuni
           subsp. jejuni ICDCCJ07001]
          Length = 433

 Score =  400 bits (1027), Expect = e-109,   Method: Composition-based stats.
 Identities = 152/446 (34%), Positives = 240/446 (53%), Gaps = 18/446 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ F+++ GC MNV DS  M       + Y     + +ADLI++NTC +REK   K++S 
Sbjct: 4   KKLFIQTLGCAMNVRDSEHMIAELTQKENYALTEDIKEADLILINTCSVREKPVHKLFSE 63

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G    +K    K      + V GC A   G EI +R+P V+ V+G +   ++ + ++  
Sbjct: 64  VGGFEKVKKEGAK------IGVCGCTASHLGNEIFKRAPYVDFVLGARNISKITQAIKTP 117

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           +F    ++ D S     +          R     +++ I  GCDK CT+C+VP+TRG EI
Sbjct: 118 KFMGVDINYDESEFAFADF---------RNSIYKSYINISIGCDKHCTYCIVPHTRGDEI 168

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVR 262
           S   + +  EA+K ++ G  EI LLGQNVN +  +  +  +K  FSDLL  LS I+GL R
Sbjct: 169 SIPFNIIYKEAQKAVEKGAKEIFLLGQNVNNYGKRFRNEHKKMDFSDLLEELSTIEGLER 228

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+T+ HP  M D  ++   +   +   +H+P+QSGS  ILK+M R +T   Y     ++
Sbjct: 229 IRFTSPHPLHMDDKFLEVFANNPKVCKSMHMPLQSGSSEILKAMKRGYTKEWYLNRALKL 288

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R + P+++IS+D IV FPGE++ DF  TMD+++K+ + Q FSFKYS R  T  + M  Q+
Sbjct: 289 RELCPNVSISTDIIVAFPGESEKDFEETMDVLEKVRFEQIFSFKYSKRPLTKAATMPNQI 348

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
           DE   + RL  LQ +  E           +  +VL E+  +    + GR+     V +  
Sbjct: 349 DEETASRRLSTLQNRHSEILDEIVKKQENKTFKVLFEEL-RAGNSITGRTDNNFLVQVEG 407

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
               +G   +V+IT+ K   LYGE+V
Sbjct: 408 SEELLGQFKEVKITNAKRMVLYGEIV 433


>gi|159030017|emb|CAO90398.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 437

 Score =  400 bits (1027), Expect = e-109,   Method: Composition-based stats.
 Identities = 136/447 (30%), Positives = 220/447 (49%), Gaps = 19/447 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
              +   GC+ N  DS  M  +    GY   N  + AD +++NTC   + A E+    L 
Sbjct: 6   TIAISHLGCEKNRIDSEHMLGLLAKAGYPVDNDEELADYVIVNTCSFIQAAREESVRTLV 65

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +               ++++GC+AQ   +E+L   P    +VG   Y ++ E++ER   
Sbjct: 66  ELAEANKK---------IIISGCMAQHFQDELLTELPEAVAIVGTGDYQKIVEIVERVET 116

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G+RV +   S +  F     +        GV A+L + EGCD  C FC++P  RG + SR
Sbjct: 117 GERVKEV--STDPTFIADENLPRYRTTTEGV-AYLRVAEGCDYRCAFCIIPQLRGDQRSR 173

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           S+  +V EAR+L   GV E+ L+ Q +    G  L GE    ++LL +L+E+  +  +R 
Sbjct: 174 SIESIVAEARQLASQGVQELILISQ-ITTNYGLDLYGEPK-LAELLRALAEVD-IPWIRV 230

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
             ++P  ++  +I+A  +   ++PYL LP+Q     IL+ MNR         II+RI+  
Sbjct: 231 HYAYPTGLTPKVIEAIRESPNVLPYLDLPLQHSHPDILRGMNRPWQGRVNDGIIERIKQA 290

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P+  + + FIVGFPGET++ F   ++ V +  +     F +S   GT    +   V + 
Sbjct: 291 IPNAVLRTTFIVGFPGETEEHFSHLLEFVKRHEFDHVGVFTFSAEEGTAAFGLPNPVPQA 350

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVVLN 441
           +  ER   L    +      N A +GQ ++VLIE+   E G+L+GR    SP +  +V  
Sbjct: 351 IMDERRERLMLTQQPISERKNQAYIGQTVDVLIEQENPETGELIGRSARFSPEVDGLVYV 410

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
           +    +G I++VRIT      LYGE+V
Sbjct: 411 TGEAILGAIVQVRITAADTYDLYGEIV 437


>gi|27468181|ref|NP_764818.1| hypothetical protein SE1263 [Staphylococcus epidermidis ATCC 12228]
 gi|57867026|ref|YP_188720.1| hypothetical protein SERP1144 [Staphylococcus epidermidis RP62A]
 gi|282875998|ref|ZP_06284865.1| MiaB-like protein [Staphylococcus epidermidis SK135]
 gi|27315727|gb|AAO04862.1|AE016748_96 conserved hypothetical protein [Staphylococcus epidermidis ATCC
           12228]
 gi|57637684|gb|AAW54472.1| conserved hypothetical protein [Staphylococcus epidermidis RP62A]
 gi|281295023|gb|EFA87550.1| MiaB-like protein [Staphylococcus epidermidis SK135]
 gi|329735363|gb|EGG71655.1| tRNA methylthiotransferase YqeV [Staphylococcus epidermidis VCU045]
 gi|329737126|gb|EGG73380.1| tRNA methylthiotransferase YqeV [Staphylococcus epidermidis VCU028]
          Length = 448

 Score =  400 bits (1027), Expect = e-109,   Method: Composition-based stats.
 Identities = 135/436 (30%), Positives = 232/436 (53%), Gaps = 17/436 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
                + GC++N Y++  +  +F    YERV    +AD+ V+NTC +     +K    + 
Sbjct: 3   TVAFHTLGCKVNHYETEAIWQLFKDANYERVEFETNADVFVINTCTVTNTGDKKSRQIIR 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R        I++  D +V V GC AQ    EI+   P V++VVG Q  ++L + +++ + 
Sbjct: 63  RA-------IRQNPDAVVCVTGCYAQTSSAEIM-EIPGVDIVVGTQDRHKLLDYIQQFQD 114

Query: 146 GKRVVDT--DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            ++ ++   +      +E L +            A L IQEGC+ FCTFC++P+ RG+  
Sbjct: 115 ERQPINGVGNIMKNRTYEELEVP----YFTDRTRASLKIQEGCNNFCTFCIIPWARGLMR 170

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR   +VV++A +L+++G  EI L G +     G G D +    + LL  L  I+GL R+
Sbjct: 171 SRDPEKVVEQATQLVNSGYKEIVLTGIHTG---GYGQDLKNYNLAQLLRDLDTIEGLERI 227

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R ++     ++D +I   G+ + ++ +LH+P+QSGSD +LK M R++T   + + + ++ 
Sbjct: 228 RISSIEASQLTDEVIDVIGNSNKVVRHLHIPLQSGSDDVLKRMRRKYTMAHFSERLTKLH 287

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              PD+A++SD IVGFPGE++D+F+ T D +    +++   F YSPR+GTP + M  Q+D
Sbjct: 288 QALPDLAVTSDVIVGFPGESEDEFQETYDFIVNHHFSELHVFPYSPRIGTPAARMDNQID 347

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
           E  K  R+  L     +    +      +++EV+ E+ G+E   LVG +     V     
Sbjct: 348 EETKNVRVHKLISLSNQLAKEYASKFEDEVLEVIPEEMGEEPHTLVGYADNYMKVRFEGD 407

Query: 444 NHNIGDIIKVRITDVK 459
           +  IG I+KV+I    
Sbjct: 408 DSLIGQIVKVKIVKAN 423


>gi|330803397|ref|XP_003289693.1| hypothetical protein DICPUDRAFT_36174 [Dictyostelium purpureum]
 gi|325080203|gb|EGC33768.1| hypothetical protein DICPUDRAFT_36174 [Dictyostelium purpureum]
          Length = 538

 Score =  399 bits (1026), Expect = e-109,   Method: Composition-based stats.
 Identities = 149/493 (30%), Positives = 263/493 (53%), Gaps = 40/493 (8%)

Query: 11  AHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC 70
            ++ S I+++    +  ++++YGCQMN  D+  +  +  + GY+ ++++ +AD++ LNTC
Sbjct: 34  PYLQSTIMNETGEGKNVYIETYGCQMNFADTEVINSILKTSGYKIIDTLKEADIVFLNTC 93

Query: 71  HIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGP 130
            IRE A  K++  L  +R+ K    +   ++ + V GC+A+   E++L     V++VVGP
Sbjct: 94  AIRENAESKIWLRLSELRSKKRKEKR---NITIAVIGCMAERLKEKLLESEHRVDIVVGP 150

Query: 131 QTYYRLPELLERARFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
             Y  LP LL + + G++   ++   S ++ +  ++ V         V+A+++I  GC+ 
Sbjct: 151 DAYRSLPSLLAKIQDGEQQTAINVMLSADETYADITPVRTS---DNMVSAYVSIMRGCNN 207

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG--------- 239
            C++C+VP+TRG E SR +  +++E R+L + G  EITLLGQNVN++             
Sbjct: 208 MCSYCIVPFTRGRERSRPVESILNEVRQLSEQGYKEITLLGQNVNSYNFVDNEESTPVNK 267

Query: 240 --------LDGEKC---------TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHG 282
                    DG K          +F++L+  +SE+   +R+R+T+ HP+D  + L++   
Sbjct: 268 DEIEKLKPRDGFKTIYKSPKKGISFTELIKLVSEVDPEMRIRFTSPHPKDFPNDLLELVK 327

Query: 283 DLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGE 342
           +   +   LH+P QSGS ++L+SM R +T   Y ++ID I+   PD  ISSDFI GF GE
Sbjct: 328 NTPNICNSLHIPAQSGSSKVLESMRRGYTRESYLELIDTIKKELPDCTISSDFISGFCGE 387

Query: 343 TDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN-MLEQVDENVKAERLLCLQKKLREQ 401
           T+ D   T+ L++ +G+  AF F YS R  T     + + V    KA RL  +     + 
Sbjct: 388 TEQDHLETISLMEYVGFENAFMFMYSLREKTHAHRHLKDDVSVEDKARRLSQVVDTFYKL 447

Query: 402 QVSFNDACVGQIIEVLIEKHGKE-KGKLVGRSPWLQSVVLNS---KNHNIGDIIKVRIT- 456
               ++  +G    VLI++  +      VGR+   + V++ +      NIGD + V+I  
Sbjct: 448 LKEKSNKEIGNFHLVLIDRLSRRSNNDFVGRTDTNKKVLIPNLEEDKLNIGDYVIVQIVN 507

Query: 457 DVKISTLYGELVV 469
                TL G+ ++
Sbjct: 508 GNSEVTLTGKPIM 520


>gi|86153933|ref|ZP_01072136.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Campylobacter jejuni
           subsp. jejuni HB93-13]
 gi|157414751|ref|YP_001482007.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Campylobacter jejuni
           subsp. jejuni 81116]
 gi|229890469|sp|A8FKP3|MIAB_CAMJ8 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|85842894|gb|EAQ60106.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Campylobacter jejuni
           subsp. jejuni HB93-13]
 gi|157385715|gb|ABV52030.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Campylobacter jejuni
           subsp. jejuni 81116]
 gi|307747390|gb|ADN90660.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Campylobacter jejuni subsp. jejuni M1]
 gi|315931101|gb|EFV10075.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Campylobacter jejuni
           subsp. jejuni 327]
          Length = 433

 Score =  399 bits (1026), Expect = e-109,   Method: Composition-based stats.
 Identities = 153/446 (34%), Positives = 240/446 (53%), Gaps = 18/446 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ F+++ GC MNV DS  M       + Y     + +ADLI++NTC +REK   K++S 
Sbjct: 4   KKLFIQTLGCAMNVRDSEHMIAELTQKENYALTEDIKEADLILINTCSVREKPVHKLFSE 63

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G    +K    K      + V GC A   G EI +R+P V+ V+G +   ++ + ++  
Sbjct: 64  VGGFEKVKKEGAK------IGVCGCTASHLGNEIFKRAPYVDFVLGARNISKITQAIKTP 117

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           +F    +D D S     +          R     +++ I  GCDK CT+C+VP+TRG EI
Sbjct: 118 KFMGVDIDYDESEFAFADF---------RNSIYKSYINISIGCDKHCTYCIVPHTRGDEI 168

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVR 262
           S   + +  EA+K ++ G  EI LLGQNVN +  +  +  +K  FSDLL  LS I+GL R
Sbjct: 169 SIPFNIIYKEAQKAVEKGAKEIFLLGQNVNNYGKRFRNEHKKMDFSDLLEELSTIEGLER 228

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+T+ HP  M D  ++   +   +   +H+P+QSGS  ILK+M R +T   Y     ++
Sbjct: 229 IRFTSPHPLHMDDKFLEVFANNPKVCKSMHMPLQSGSSEILKAMKRGYTKEWYLNRALKL 288

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R + P+++IS+D IV FPGE++ DF  TMD+++K+ + Q FSFKYS R  T  + M  Q+
Sbjct: 289 RELCPNVSISTDIIVAFPGESEKDFEETMDVLEKVRFEQIFSFKYSKRPLTKAATMPNQI 348

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
           DE   + RL  LQ +  E           +  +VL E+  +    + GR+     V +  
Sbjct: 349 DEETASRRLSTLQNRHSEILDEIVKKQENKTFKVLFEEL-RAGNSIAGRTDNNFLVQVEG 407

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
               +G   +V+IT+ K   LYGE+V
Sbjct: 408 SEELLGQFKEVKITNAKRMVLYGEIV 433


>gi|220928129|ref|YP_002505038.1| MiaB-like tRNA modifying enzyme YliG [Clostridium cellulolyticum
           H10]
 gi|219998457|gb|ACL75058.1| MiaB-like tRNA modifying enzyme YliG [Clostridium cellulolyticum
           H10]
          Length = 446

 Score =  399 bits (1026), Expect = e-109,   Method: Composition-based stats.
 Identities = 129/452 (28%), Positives = 225/452 (49%), Gaps = 17/452 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + ++  + S GC  N+ DS  M  M     YE VNS +DAD++++NTC   E A ++  +
Sbjct: 1   MKKKIGIVSLGCPKNLVDSEIMLGMLSHSDYEIVNSKEDADVLIVNTCGFIESAQQESIN 60

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +  +   K    +     +++V GC+A+   E+IL + P V+ V+G   Y  + E++  
Sbjct: 61  TILEMAEEKGRNCE-----VLIVTGCMAERYKEKILEQIPEVDAVLGTGNYKEIAEVINL 115

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           A  G++ V   Y   D+ + L   +         + +L I EGCD  CT+C++P+ RG  
Sbjct: 116 AYMGEKTVA--YGKLDETDYLD--EERVLSSSKHSVYLKISEGCDNRCTYCIIPFLRGKY 171

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR +  +V EA  L   G  EI ++ Q+     G  L G+K    +L+  +S+I G+  
Sbjct: 172 RSRKMESLVREAELLAGKGTKEIVIVAQDST-RYGIDLYGKKM-LPELIRKISDISGIEW 229

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R    +P ++ D LI        +  YL +P+Q  SDR+LK M RR T  E +Q+++++
Sbjct: 230 VRLLYCYPEEIDDELINEIAINPKVCKYLDIPIQHASDRVLKQMGRRGTISEIKQVLNKL 289

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R     I I +  IVGFPGET++DF   M  V +    +   F YS   GT  + M  Q+
Sbjct: 290 REKVSGITIRTSLIVGFPGETEEDFEELMAFVKEFRLDRVGVFTYSKEEGTAAAKMKNQI 349

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSV 438
            +++K +R   + +         N +  G++ + +++    +     GR+    P +  +
Sbjct: 350 PKHIKIKRQKKILELQNVISREINQSRNGKVYKTIVDGIADDGIFYYGRTYAEAPEIDGI 409

Query: 439 VL--NSKNHNIGDIIKVRITDVKISTLYGELV 468
           +   + +  +IG  I VRI + +   L GE++
Sbjct: 410 IYFTSPEELSIGSFINVRILNTEDYDLIGEVI 441


>gi|15924566|ref|NP_372100.1| hypothetical protein SAV1576 [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|15927156|ref|NP_374689.1| hypothetical protein SA1405 [Staphylococcus aureus subsp. aureus
           N315]
 gi|156979894|ref|YP_001442153.1| hypothetical protein SAHV_1563 [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|255006362|ref|ZP_05144963.2| hypothetical protein SauraM_07835 [Staphylococcus aureus subsp.
           aureus Mu50-omega]
 gi|13701374|dbj|BAB42668.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           N315]
 gi|14247347|dbj|BAB57738.1| putative 2-methylthioadenine synthetase [Staphylococcus aureus
           subsp. aureus Mu50]
 gi|156722029|dbj|BAF78446.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           Mu3]
          Length = 448

 Score =  399 bits (1026), Expect = e-109,   Method: Composition-based stats.
 Identities = 139/436 (31%), Positives = 230/436 (52%), Gaps = 17/436 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
                + GC++N Y++  +  +F    YERV+   +AD+ V+NTC +     +K    + 
Sbjct: 3   TVAFHTLGCKVNHYETEAIWQLFKEANYERVDFEANADVFVINTCTVTNTGDKKSRQIIR 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R        I++  D ++ V GC AQ    EI+   P V+VVVG Q  ++L   ++  R 
Sbjct: 63  RA-------IRQNPDAVICVTGCYAQTSSAEIM-EIPGVDVVVGTQDRHKLLGYIDEFRK 114

Query: 146 GKRVVDT--DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            ++ ++   +     K+E L +            A L IQEGC+ FCTFC++P+ RG+  
Sbjct: 115 ERQPINGVGNIMKNRKYEELDVP----YFTDRTRASLKIQEGCNNFCTFCIIPWARGLMR 170

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR   +VV++A +L+++G  EI L G +     G G D +    + LL  L  I GL R+
Sbjct: 171 SRDPEKVVEQATQLVNSGYKEIVLTGIHTG---GYGQDLKDYNLAQLLRDLETINGLERI 227

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R ++     ++D +I        ++ +LH+P+QSGSD +LK M R++T   + + + ++ 
Sbjct: 228 RISSIEASQLTDEVIDVLERSTKVVRHLHIPLQSGSDTVLKRMRRKYTMDRFSERLTKLH 287

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              PD+A++SD IVGFPGET+ +F+ T D + K  +++   F YSPR+GTP + M +Q+D
Sbjct: 288 KALPDLAVTSDVIVGFPGETEAEFQETYDFIVKHKFSELHVFPYSPRIGTPAARMDDQID 347

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
           E +K ER+  L     +    +       ++EV+ E+ G  +G LVG +     V     
Sbjct: 348 EEIKNERVHKLITLSNQLGKLYVSKFDQDVLEVIPEEQGDTEGTLVGYADNYMKVQFEGD 407

Query: 444 NHNIGDIIKVRITDVK 459
              IG I+KV+IT   
Sbjct: 408 ESLIGQIVKVKITQAN 423


>gi|171909784|ref|ZP_02925254.1| hypothetical protein VspiD_01390 [Verrucomicrobium spinosum DSM
           4136]
          Length = 455

 Score =  399 bits (1026), Expect = e-109,   Method: Composition-based stats.
 Identities = 166/459 (36%), Positives = 269/459 (58%), Gaps = 18/459 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           +P + ++K+YGCQMN  DS ++  MF  +GY       +AD++++NTC +R++A +K   
Sbjct: 1   MP-KVYIKTYGCQMNERDSEQVSQMFIERGYTMTREEPEADVVLINTCSVRDQAEQKAIG 59

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE- 141
            +G +R +     ++   ++    GC+AQ+   E+L+ +  V++VVG Q Y+R+ E +E 
Sbjct: 60  KMGMLRKIH----RQRTHVVTGFMGCMAQSRAGELLKTA-KVDLVVGTQKYHRVVEYVEE 114

Query: 142 --RARFGKRVVDTDYSVEDKFERLSI---VDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
             RA+  +++ D  +S+ D  E  S    +     +++  +AF++I +GC+  CTFC+VP
Sbjct: 115 IVRAKEARQMDDEKFSIVDVEEESSSQNAIRDHILKEKQASAFVSIMQGCNMKCTFCIVP 174

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE--KCTFSDLLYSL 254
           YTRG E  R ++++V+E R+L D G+ E+TLLGQ VN +       +  K  F  LL  +
Sbjct: 175 YTRGGERGRPIAEIVEEVRRLADQGIKEVTLLGQIVNLYGRHEFPMKDGKSPFVQLLEGV 234

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
            E+ G+ R+R+T+ HP      LI A   L  L  ++HLP+QSGSD ILK M+R ++A +
Sbjct: 235 HEVPGIERIRFTSPHPIGYKSDLINAFTYLPKLAEHVHLPLQSGSDAILKKMHRPYSAAK 294

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
           +  ++ RIR+ RP IA+S+D IVGFPGET++ ++ T  L D++ +  AF F+YS R GTP
Sbjct: 295 FEDLVARIRAARPGIAVSTDIIVGFPGETEEHYQETRALCDRVQFENAFIFRYSKRRGTP 354

Query: 375 GSNMLE--QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGR 431
            + M +  Q+ E VK ER   L   + +   +     +G  +E+L E   K +  +LVGR
Sbjct: 355 AAEMDDALQLSERVKEERNQDLLALVNQHAQAKYVPLIGTKVEILCEGPSKTDASRLVGR 414

Query: 432 SPWLQSVVLNSKNHNI-GDIIKVRITDVKISTLYGELVV 469
           +   + VV       + G I  V +TD    TLYGE V+
Sbjct: 415 TRTNKIVVFEGPAERLTGQIFDVHVTDFANFTLYGEAVL 453


>gi|147794658|emb|CAN73510.1| hypothetical protein VITISV_007911 [Vitis vinifera]
          Length = 590

 Score =  399 bits (1026), Expect = e-109,   Method: Composition-based stats.
 Identities = 165/503 (32%), Positives = 253/503 (50%), Gaps = 52/503 (10%)

Query: 16  QIVDQCIVPQ-RFFVKSYGCQMNVYDSLRMEDMFFSQGY-ERVNSMDDADLIVLNTCHIR 73
            +    I+P+ R + ++YGCQMN+ D   +  +    GY E V   + A++I +NTC IR
Sbjct: 65  PVSASEILPRGRIYHETYGCQMNINDMEIVLSIMKKAGYNEVVEVPESAEVIFINTCAIR 124

Query: 74  EKAAEKVYSFLGRIRNLKNSRIKEG--------GDLLVVVAGCVAQAEGEEILRRSPIVN 125
           + A +KV+  L     LK                   VVV GC+A+   ++IL    +V+
Sbjct: 125 DNAEQKVWQRLNYFWFLKRHWKSNVSIGRADSLHPPKVVVLGCMAERLKDKILDADKMVD 184

Query: 126 VVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEG 185
           VV GP  Y  LP LLE   +G++ ++T  S+E+ +  +S V      K  VTAF++I  G
Sbjct: 185 VVCGPDAYRDLPRLLEEVDYGQKGINTLLSLEETYADISPVRIS---KNSVTAFVSIMRG 241

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG-KGLDGE- 243
           C+  C+FC+VP+TRG E SR +  +V E  +L   GV E+ LLGQNVN++    G D E 
Sbjct: 242 CNNMCSFCIVPFTRGRERSRPVESIVREVAELWKEGVKEVMLLGQNVNSYNDASGFDKEV 301

Query: 244 ---------------------KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHG 282
                                   FSDLL  LS     +R RYT+ HP+D  D L+    
Sbjct: 302 EPGANWKLSEGFSSKCKVKKMGLRFSDLLDRLSTEFPEMRFRYTSPHPKDFPDELLYLMR 361

Query: 283 DLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGE 342
           D   +   +HLP Q+GS  +L+ M R +T   Y  ++ +IR + PD+ I+SDFI GF GE
Sbjct: 362 DRYNVCKSIHLPAQTGSSTVLERMRRGYTREAYLDLVQKIRRIVPDVGITSDFICGFCGE 421

Query: 343 TDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN-MLEQVDENVKAERLLCLQKKLREQ 401
           T++++  T+ LV  +GY  A+ F YS R  T      ++ V +N+K  RL  + +  RE 
Sbjct: 422 TEEEYADTISLVKAVGYDMAYMFAYSMREKTHAHRNYVDDVPDNIKQRRLAEMIEVFRES 481

Query: 402 QVSFNDACVGQIIEVLIEKHGKE--KGKLVGRSPWLQSVVLNSK-------------NHN 446
                D+ +G +  VL+E   K     +L+G++     V   +              N  
Sbjct: 482 TGQCYDSQIGTVQLVLVEGPNKRAPDTELIGKTDRGHRVSFKNTPVPHWDDDVGGNQNPR 541

Query: 447 IGDIIKVRITDVKISTLYGELVV 469
           +GD ++VRI     ++L+GE + 
Sbjct: 542 VGDFVEVRILTSTRASLFGEALA 564


>gi|116327643|ref|YP_797363.1| 2-methylthioadenine synthetase [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116330557|ref|YP_800275.1| 2-methylthioadenine synthetase [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
 gi|122281687|sp|Q04UA3|MIAB_LEPBJ RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|122284560|sp|Q053R5|MIAB_LEPBL RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|116120387|gb|ABJ78430.1| 2-methylthioadenine synthetase [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116124246|gb|ABJ75517.1| 2-methylthioadenine synthetase [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
          Length = 449

 Score =  399 bits (1026), Expect = e-109,   Method: Composition-based stats.
 Identities = 154/448 (34%), Positives = 248/448 (55%), Gaps = 22/448 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + ++++YGCQMN YDS  +  +     Y      +++D+I LNTC IRE A  K+Y+ L 
Sbjct: 12  KVYIETYGCQMNEYDSGIVSSLMKDAEYSSSPDPENSDIIFLNTCAIRENAHAKIYNRLQ 71

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +  LK    K   +L++ V GC+AQ  G+++  +   +++VVGP  Y  LPEL++R R 
Sbjct: 72  SLGYLK----KRNPELVIGVLGCMAQNLGDDLFHQELPLDLVVGPDNYRSLPELIQRIRS 127

Query: 146 GKRVVD-TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
           G+  +  T  S  + ++ +           G+ AF+TI  GC+ FCTFCVVPYTRG E S
Sbjct: 128 GEHSISLTRLSKIETYDEIEP-----RVVNGIQAFVTIMRGCNNFCTFCVVPYTRGRERS 182

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R    +V E + L + G+ ++TLLGQNVN+++ +G D     F+ L+  L +   + R+R
Sbjct: 183 RDPKSIVREIQDLTEKGIRQVTLLGQNVNSYKEQGTD-----FAGLIQMLLDETTIERIR 237

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +T+ HP+D    L++         P +HLP+Q+G+ R+L+ M R ++  E+  ++  IR+
Sbjct: 238 FTSPHPKDFPVRLLRLMAQNPRFCPNIHLPLQAGNTRVLEEMKRSYSKEEFLDVVREIRN 297

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQVD 383
           + PD+ I++D IVGFP ET+++F  T+ +V ++ +  AF FKYS R GT     + + V 
Sbjct: 298 IVPDVGITTDIIVGFPNETEEEFEDTLAVVREVQFDMAFMFKYSEREGTMARKKLPDNVS 357

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLVGRSPWLQSVVLNS 442
           E  K+ RL  L           N A +G++  +LIE   ++   +L GR+P  +  V   
Sbjct: 358 EETKSARLTKLVDLQTSISHEQNRARIGRVYSILIENTSRKSEKQLCGRTPCGRMTVFPL 417

Query: 443 KN-----HNIGDIIKVRITDVKISTLYG 465
                    IG  + VRI     +TL G
Sbjct: 418 PEGRSASEMIGSTVSVRIESATSATLKG 445


>gi|113952803|ref|YP_729952.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Synechococcus
           sp. CC9311]
 gi|113880154|gb|ABI45112.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Synechococcus sp. CC9311]
          Length = 436

 Score =  399 bits (1026), Expect = e-109,   Method: Composition-based stats.
 Identities = 175/446 (39%), Positives = 257/446 (57%), Gaps = 23/446 (5%)

Query: 36  MNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRI 95
           MN  DS RM  +  + GY+  N+  DADL++ NTC IR+ A +KVYS+LGR    K    
Sbjct: 1   MNKADSERMAGILETMGYQEANAELDADLVLYNTCTIRDNAEQKVYSYLGRQAIRK---- 56

Query: 96  KEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYS 155
           +   +L +VVAGCVAQ EGE +LRR P +++V+GPQ   RL  LL + + G++VV T+  
Sbjct: 57  RTNPNLTLVVAGCVAQQEGESLLRRVPELDLVMGPQHANRLETLLTQVQAGQQVVATE-- 114

Query: 156 VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEAR 215
                E L+       R     A++ +  GC++ CT+CVVP  RG E SR    ++ E  
Sbjct: 115 DHHILEDLTTAR----RDSSTCAWVNVIYGCNERCTYCVVPSVRGKEQSRLPESILLEME 170

Query: 216 KLIDNGVCEITLLGQNVNAWRGKGLDG------EKCTFSDLLYSLSEIKGLVRLRYTTSH 269
            L   G  EITLLGQN++A  G+ L G       + T +DLL+ + +++G+ RLR+ TSH
Sbjct: 171 GLAARGFKEITLLGQNIDA-YGRDLPGITAEGRRQHTLTDLLHQVHDVEGIERLRFATSH 229

Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329
           PR  ++ LI A  DL  +  + H+P QSG + +LK+M R +T   YR+IIDRIR   PD 
Sbjct: 230 PRYFTERLIDACADLPKVCEHFHIPFQSGDNELLKAMARGYTVERYRRIIDRIRKRMPDA 289

Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAE 389
           AIS+D IV FPGETD  +R T+ L+++IG+ Q  +  YSPR  TP ++   Q+ E VK  
Sbjct: 290 AISADVIVAFPGETDAQYRRTLALIEEIGFDQVNTAAYSPRPNTPAADWNNQLSEEVKVA 349

Query: 390 RLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSVVLNSK----- 443
           RL  +   +       N    G+I +VL E  + K+  +L+GR+   +    +++     
Sbjct: 350 RLQEINALVESTAKERNARYAGRIEQVLAEGMNPKDPSQLMGRTRTNRLTFFSAESPQGI 409

Query: 444 NHNIGDIIKVRITDVKISTLYGELVV 469
            H  GD++ VRI  V+  +L G  V+
Sbjct: 410 THRAGDLVDVRIDQVRSFSLTGTPVI 435


>gi|115372357|ref|ZP_01459666.1| conserved hypothetical protein [Stigmatella aurantiaca DW4/3-1]
 gi|115370570|gb|EAU69496.1| conserved hypothetical protein [Stigmatella aurantiaca DW4/3-1]
          Length = 469

 Score =  399 bits (1026), Expect = e-109,   Method: Composition-based stats.
 Identities = 125/451 (27%), Positives = 211/451 (46%), Gaps = 21/451 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +  ++ + GC  N  DS  M      +GY  V    +A +IV+NTC     A ++    +
Sbjct: 6   KSLYMMTLGCPKNRVDSEVMLGTLKQRGYRLVQEPAEAQVIVVNTCAFIGPAKQESVDSI 65

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             +   K    K G    +VV GC++Q  G E+ +  P V+  +G   Y ++ +LL    
Sbjct: 66  LEMAEYK----KSGACSTLVVTGCLSQRHGGELAQEMPEVDHFLGTSAYAQIGDLLAAEA 121

Query: 145 FGKRVV-DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             ++V+ D DY    +  R        N     TA+L + EGCD  C FC++P  RG + 
Sbjct: 122 SPRQVIPDPDYIHNAETPR-------ENSMPSYTAYLKVSEGCDNACAFCIIPTLRGGQR 174

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR ++ ++ EA +L D GV E+ L+ Q++ A  G  L G K    DLL  L ++  +  +
Sbjct: 175 SRPIADIIAEATRLADQGVQELNLVAQDLTA-YGHDLPG-KPKLHDLLKELVKVD-VRWI 231

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R   ++PR   D LI+       +  YL +P+Q  SD++L SM R   +     ++ ++R
Sbjct: 232 RLHYAYPRIFPDELIEVMATEKKIAKYLDMPLQHASDKLLTSMKRGRNSQFLTDLLAKLR 291

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           +  P + + +  IVG PGET++DF    + V    + +   F+YS   GT   +M  ++ 
Sbjct: 292 ARVPGLVMRTSLIVGLPGETEEDFELLKEFVKTQRFERLGVFQYSDEEGTAAYDMPNKIP 351

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-----GKLVGRSPWLQS- 437
           +     R   +    +      N   VG+ IEVL+E    E      G+  G++P +   
Sbjct: 352 QKTIERRWREIMAIQKRINREQNKKLVGKRIEVLVEGTSPETEHLLVGRHEGQAPEIDGQ 411

Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           V +N      G+ + + +T+     L G +V
Sbjct: 412 VYINDGLAYPGEFVTLEVTEAHDYDLVGRVV 442


>gi|283955880|ref|ZP_06373370.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Campylobacter jejuni
           subsp. jejuni 1336]
 gi|283792540|gb|EFC31319.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Campylobacter jejuni
           subsp. jejuni 1336]
          Length = 433

 Score =  399 bits (1026), Expect = e-109,   Method: Composition-based stats.
 Identities = 154/446 (34%), Positives = 240/446 (53%), Gaps = 18/446 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ F+++ GC MNV DS  M       + Y     + +ADLI++NTC +REK   K++S 
Sbjct: 4   KKLFIQTLGCAMNVRDSEHMIAELTQKENYALTEDIKEADLILINTCSVREKPVHKLFSE 63

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G    +K    K      + V GC A   G EI +R+P V+ V+G +   ++ + ++  
Sbjct: 64  VGGFEKVKKEGAK------IGVCGCTASHLGNEIFKRAPYVDFVLGARNISKITQAIKTP 117

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           +F    +D D S     +          R     +++ I  GCDK CT+C+VP+TRG EI
Sbjct: 118 KFMGVDIDYDESEFAFADF---------RNSIYKSYINISIGCDKHCTYCIVPHTRGDEI 168

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVR 262
           S   + +  EA+K ++ G  EI LLGQNVN +  +  +  +K  FSDLL  LS I+GL R
Sbjct: 169 SIPFNIIYKEAQKAVEKGAKEIFLLGQNVNNYGKRFRNEHKKMDFSDLLEELSTIEGLER 228

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+T+ HP  M D  +K   +   +   +H+P+QSGS  ILK+M R +T   Y     ++
Sbjct: 229 IRFTSPHPLHMDDKFLKVFANNPKVCKSMHMPLQSGSSEILKAMKRGYTKEWYLNRALKL 288

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R + P+++IS+D IV FPGE++ DF  TMD+++K+ + Q FSFKYS R  T  + M  Q+
Sbjct: 289 RELCPNVSISTDIIVAFPGESEKDFEETMDVLEKVRFEQIFSFKYSKRPLTKAATMPNQI 348

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
           DE   + RL  LQ +  E           +  +VL E+  +    + GR+     V +  
Sbjct: 349 DEETASRRLSTLQNRHSEILDEIVKKQENKTFKVLFEEL-RAGNSIAGRTDNNFLVQVEG 407

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
               +G   +V+IT+ K   LYGE+V
Sbjct: 408 SEELLGQFKEVKITNAKRMVLYGEIV 433


>gi|71083088|ref|YP_265807.1| tRNA-i(6)A37 modification enzyme [Candidatus Pelagibacter ubique
           HTCC1062]
 gi|123775533|sp|Q4FNN5|MIAB_PELUB RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|71062201|gb|AAZ21204.1| tRNA-i(6)A37 modification enzyme [Candidatus Pelagibacter ubique
           HTCC1062]
          Length = 446

 Score =  399 bits (1026), Expect = e-109,   Method: Composition-based stats.
 Identities = 189/445 (42%), Positives = 286/445 (64%), Gaps = 8/445 (1%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + ++ F+K++GCQMN YDS R+ D     G+E+    +DA+  +LNTCHIR+KA EKVY 
Sbjct: 1   MLKKIFIKTFGCQMNEYDSNRIFDTVKKIGFEKTEKYEDANCYLLNTCHIRDKAKEKVYH 60

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +GR++ +   + K     +VVVAGCVAQAE +E+L+R P +++V+GPQ+Y+++ E +  
Sbjct: 61  EIGRVKKIFREKKKP----IVVVAGCVAQAENQEMLKREPYIDIVIGPQSYHKINEAILN 116

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
                     + +  D   + + +    N+   V++FLTIQEGCDKFC FCVVPYTRG E
Sbjct: 117 HLK--NKKKEEETEFDTISKFNYLSQIKNKDSKVSSFLTIQEGCDKFCHFCVVPYTRGPE 174

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR   Q+++EA++L+ +G  EI LLGQNVNA      +G+K   SDLL  L     L R
Sbjct: 175 YSRPFDQIINEAKELVQSGAKEIILLGQNVNA-YSYDEEGKKYRLSDLLIKLDSFDKLER 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +RYTTSHP+DM+D LI  +     LMP +HLPVQSGS++IL  MNR+HT  EY  + +++
Sbjct: 234 IRYTTSHPKDMTDDLINVYKTSSKLMPLVHLPVQSGSNKILNLMNRKHTIEEYLLVYEKL 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R + P I  SSDFI+G+P E + DF+ TM+L++K+ +  ++SF +SPR GT  +N+   V
Sbjct: 294 RKINPKIEFSSDFIIGYPEEDEQDFKMTMELIEKVKFINSYSFIFSPRPGTVAANLT-LV 352

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
           D+    +RL  +Q+KL   Q+  N +   +I+ VL+E   K+  KL GR+ ++ SV+ + 
Sbjct: 353 DQKKSKQRLEIIQEKLFNNQIKKNKSLENKILNVLVENKMKDGIKLFGRTEYMTSVIFDG 412

Query: 443 KNHNIGDIIKVRITDVKISTLYGEL 467
              NIG +++V I     ++L+G+L
Sbjct: 413 NIENIGKLVQVEIISSNQNSLFGKL 437


>gi|251810993|ref|ZP_04825466.1| 2-methylthioadenine synthase [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|293366463|ref|ZP_06613140.1| Fe-S oxidoreductase [Staphylococcus epidermidis M23864:W2(grey)]
 gi|251805503|gb|EES58160.1| 2-methylthioadenine synthase [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|291319232|gb|EFE59601.1| Fe-S oxidoreductase [Staphylococcus epidermidis M23864:W2(grey)]
          Length = 451

 Score =  399 bits (1026), Expect = e-109,   Method: Composition-based stats.
 Identities = 135/436 (30%), Positives = 232/436 (53%), Gaps = 17/436 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
                + GC++N Y++  +  +F    YERV    +AD+ V+NTC +     +K    + 
Sbjct: 6   TVAFHTLGCKVNHYETEAIWQLFKDANYERVEFETNADVFVINTCTVTNTGDKKSRQIIR 65

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R        I++  D +V V GC AQ    EI+   P V++VVG Q  ++L + +++ + 
Sbjct: 66  RA-------IRQNPDAVVCVTGCYAQTSSAEIM-EIPGVDIVVGTQDRHKLLDYIQQFQD 117

Query: 146 GKRVVDT--DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            ++ ++   +      +E L +            A L IQEGC+ FCTFC++P+ RG+  
Sbjct: 118 ERQPINGVGNIMKNRTYEELEVP----YFTDRTRASLKIQEGCNNFCTFCIIPWARGLMR 173

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR   +VV++A +L+++G  EI L G +     G G D +    + LL  L  I+GL R+
Sbjct: 174 SRDPEKVVEQATQLVNSGYKEIVLTGIHTG---GYGQDLKNYNLAQLLRDLDTIEGLERI 230

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R ++     ++D +I   G+ + ++ +LH+P+QSGSD +LK M R++T   + + + ++ 
Sbjct: 231 RISSIEASQLTDEVIDVIGNSNKVVRHLHIPLQSGSDDVLKRMRRKYTMAHFSERLTKLH 290

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              PD+A++SD IVGFPGE++D+F+ T D +    +++   F YSPR+GTP + M  Q+D
Sbjct: 291 QALPDLAVTSDVIVGFPGESEDEFQETYDFIVNHHFSELHVFPYSPRIGTPAARMDNQID 350

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
           E  K  R+  L     +    +      +++EV+ E+ G+E   LVG +     V     
Sbjct: 351 EETKNVRVHKLISLSNQLAKEYASKFEDEVLEVIPEEMGEEPHTLVGYADNYMKVRFEGD 410

Query: 444 NHNIGDIIKVRITDVK 459
           +  IG I+KV+I    
Sbjct: 411 DSLIGQIVKVKIVKAN 426


>gi|42525164|ref|NP_970544.1| hypothetical protein Bd3841 [Bdellovibrio bacteriovorus HD100]
 gi|81615876|sp|Q6MGT1|RIMO_BDEBA RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|39577375|emb|CAE81198.1| conserved hypothetical protein [Bdellovibrio bacteriovorus HD100]
          Length = 457

 Score =  399 bits (1026), Expect = e-109,   Method: Composition-based stats.
 Identities = 133/463 (28%), Positives = 229/463 (49%), Gaps = 18/463 (3%)

Query: 17  IVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA 76
           +  +    ++    S GC  N+ DS  M       GYE V   D AD +++NTC   E +
Sbjct: 1   MKQETAQNKKVHFISLGCPKNLVDSEIMAGTLMKDGYEVVGEADQADTVIVNTCGFIEDS 60

Query: 77  AEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL 136
            ++    +  + +LK      G    VVVAGC+ Q   ++++   P  ++ VG   +  +
Sbjct: 61  KKESIQRILDMSDLKQE----GKIKKVVVAGCLTQRYKDDLVEGLPEADLFVGSGEFQNI 116

Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
            ++L+ +  G++   T +++    +  +      N + G  A+L I EGC K C FC +P
Sbjct: 117 AKILKNSDEGEKQ-KTFFNLPTYLQEEATPR--VNSQPGHRAYLKISEGCMKRCAFCAIP 173

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL----DGEKCTFSDLLY 252
             RG   SRS+  +V EA+ L+  GV E+ ++  +     G  +       K +  +LL 
Sbjct: 174 LIRGNLQSRSIDAIVAEAKLLVAGGVKELIIISHDFT-DYGFDIRRKDPTRKESPVELLK 232

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
           +L +++GL  +R    +P  ++  +++   +   ++ Y  +P+Q  +D++LKSMNR+ T 
Sbjct: 233 ALDQVEGLQWIRLMYLYPDGITQEMVQVIKNSTKIVKYFDMPLQHVNDQVLKSMNRKMTR 292

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
            E    +  IR   P+  I + FIVGFPGET + F   ++ V +  + +   FKYSP   
Sbjct: 293 DEIETALMNIREHLPEAVIRTQFIVGFPGETQEQFEELLNFVAEQQFDRVGCFKYSPEEN 352

Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-----GK 427
           TPG  M  Q+DE  K  R   L +  +      +   VG+ ++V++E   +E      G+
Sbjct: 353 TPGGRMENQIDEETKQYRHDALMEVQQNISREKHSDFVGKTLQVIVEGFSEETDLLLQGR 412

Query: 428 LVGRSPWLQSVV-LNSKNHNIGDIIKVRITDVKISTLYGELVV 469
             G++P +  VV +N     +GD++KV ITD     L GE+VV
Sbjct: 413 FWGQAPDIDGVVLINDGQAQVGDMVKVHITDNMEYDLIGEIVV 455


>gi|195571987|ref|XP_002103982.1| GD20720 [Drosophila simulans]
 gi|194199909|gb|EDX13485.1| GD20720 [Drosophila simulans]
          Length = 583

 Score =  399 bits (1025), Expect = e-109,   Method: Composition-based stats.
 Identities = 152/480 (31%), Positives = 246/480 (51%), Gaps = 39/480 (8%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++   + YGCQMN  D+  +  +    GY R    ++AD+I+L TC +R+ A +++++ L
Sbjct: 92  RKVHFEVYGCQMNTNDTEVVFSILKENGYLRCQEPEEADVIMLVTCAVRDGAEQRIWNRL 151

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             +R +KN R      L + + GC+A+   E++L +   V+V+ GP +Y  LP LL  +R
Sbjct: 152 KHLRAMKNKRSTRRHPLQLTLLGCMAERLKEKLLDQEQCVDVIAGPDSYKDLPRLLAISR 211

Query: 145 F-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             G   ++   S+++ +  +  V          TAF++I  GCD  CT+C+VP+TRG E 
Sbjct: 212 HYGNSAINVLLSLDETYADVMPVRLN---SESPTAFVSIMRGCDNMCTYCIVPFTRGRER 268

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE-------------------- 243
           SR L+ +V E + L + GV E+TLLGQNVN++R +    E                    
Sbjct: 269 SRPLASIVAEVKALAEQGVKEVTLLGQNVNSYRDRSAQEEQEPLKATAVPGFSTVYKPKT 328

Query: 244 -KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
               F+ LL S+++    +R+R+T+ HP+D SD +++   D   +   LHLP QSG+ ++
Sbjct: 329 GGTPFAALLRSVAQAVPEMRIRFTSPHPKDFSDEVLEVIRDHPNVCKQLHLPAQSGNTQV 388

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           L+ M R ++   Y +++  IR   PD+ +SSDFI GF GET+++F+ T+ L+ ++ Y  A
Sbjct: 389 LERMRRGYSREAYLELVQHIRQFLPDVGLSSDFICGFCGETEEEFQDTVSLIQQVQYNVA 448

Query: 363 FSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKH 421
           + F YS R  T       + V  NVK ERL  + +  RE     +    GQ   +LIE  
Sbjct: 449 YLFAYSMREKTTAHRRFKDDVPINVKNERLRRMVQIFREGATQLHRKMEGQEQLILIEGK 508

Query: 422 GKE-KGKLVGRSPWLQSVVLNSKNHNI------------GDIIKVRITDVKISTLYGELV 468
            K       GR+     V++ S    I            GD + VRI +     L G  +
Sbjct: 509 SKRSDSHWFGRNDANIKVIVPSIEVPISGDSSARKSFGVGDFLAVRIEESNSQVLKGTPL 568


>gi|302333252|gb|ADL23445.1| radical SAM domain protein [Staphylococcus aureus subsp. aureus
           JKD6159]
          Length = 448

 Score =  399 bits (1025), Expect = e-109,   Method: Composition-based stats.
 Identities = 140/436 (32%), Positives = 229/436 (52%), Gaps = 17/436 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
                + GC++N Y++  +  +F    YERV+   +AD+ V+NTC +     +K    + 
Sbjct: 3   TVAFHTLGCKVNHYETEAIWQLFKEANYERVDFEANADVFVINTCTVTNTGDKKSRQIIR 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R        I++  D ++ V GC AQ    EI+   P V+VVVG Q  ++L   ++  R 
Sbjct: 63  RA-------IRQNPDAVICVTGCYAQTSSAEIM-EIPGVDVVVGTQDRHKLLGYIDEFRK 114

Query: 146 GKRVVDT--DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            ++ ++   +     K+E L +            A L IQEGC+ FCTFC++P+ RG+  
Sbjct: 115 ERQPINGVGNIMKNRKYEELDVP----YFTDRTRASLKIQEGCNNFCTFCIIPWARGLMR 170

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR   +VV++A +L+++G  EI L G +     G G D +    + LL  L  I GL R+
Sbjct: 171 SRDPEKVVEQATQLVNSGYKEIVLTGIHTG---GYGQDLKDYNLAQLLRDLETINGLERI 227

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R ++     ++D +I        ++ +LH+P+QSGSD +LK M R++T   + + + ++ 
Sbjct: 228 RISSIEASQLTDEVIDVLERSTKVVRHLHIPLQSGSDTVLKRMRRKYTMDRFSERLTKLH 287

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              PD+A++SD IVGFPGET+ +F+ T D + K  +++   F YSPR+GTP + M +Q+D
Sbjct: 288 KALPDLAVTSDVIVGFPGETEAEFQETYDFIVKHKFSELHVFPYSPRIGTPAARMDDQID 347

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
           E VK ER+  L     +    +       ++EV+ E+ G   G LVG +     V     
Sbjct: 348 EEVKNERVHKLITLSNQLGKLYASKFDQDVLEVIPEEQGNTVGTLVGYADNYMKVQFEGD 407

Query: 444 NHNIGDIIKVRITDVK 459
              IG I+KV+IT   
Sbjct: 408 ESLIGQIVKVKITQAN 423


>gi|197117015|ref|YP_002137442.1| ribosomal protein S12 methylthiotransferase [Geobacter bemidjiensis
           Bem]
 gi|238066226|sp|B5ED60|RIMO_GEOBB RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|197086375|gb|ACH37646.1| ribosomal protein S12 methylthiotransferase [Geobacter bemidjiensis
           Bem]
          Length = 448

 Score =  399 bits (1025), Expect = e-109,   Method: Composition-based stats.
 Identities = 138/456 (30%), Positives = 233/456 (51%), Gaps = 23/456 (5%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
             ++  + S GC  N+ D+  M        YE       AD+IV+NTC   ++A ++   
Sbjct: 5   TKEKVSLVSLGCPKNLVDAEVMLGYLSQDEYEVTTDETQADIIVVNTCSFIKEAKQESID 64

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +  + + K     +    L++V GC+ Q   +E+ +  P V++ +G   Y R+ E++  
Sbjct: 65  TILDLADRK----HDARCKLLIVTGCLPQRYQQELAKELPEVDIFIGTGDYPRIAEIIAE 120

Query: 143 ARFGKRVV----DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
            +  +  +    D ++   D+  RL             TA+L I EGC   C++CV+P  
Sbjct: 121 KKQTEEQLCYTGDPNFVYNDEVPRLQSSPH-------YTAYLKIAEGCSNNCSYCVIPSL 173

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258
           RG   SR L+ ++ EA+ L++ GV E+ L+ Q++ A  G+ L+G K +   L+  L +++
Sbjct: 174 RGGHRSRPLATLLAEAKALVEGGVKELNLIAQDITA-YGRDLEG-KPSLELLIKELVKME 231

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
            L  +R   ++P  ++D LI+   +   +  YL LP+Q  SD +L +M RR    E R +
Sbjct: 232 KLKWIRLLYAYPDGVTDSLIQLIKEEPKVCKYLDLPIQHISDPVLSNMKRRSGEAEIRTL 291

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           I ++R   PDIAI +  IVGFPGET DDF+  +  V++  + +   F YS   GTP + M
Sbjct: 292 ISKLRREIPDIAIRTSLIVGFPGETTDDFKKLLQFVEQTRFDRLGVFCYSREDGTPAAEM 351

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-----KGKLVGRSP 433
            +QV E +K ER   L +         N   V    +VL+E + +E     KG+   ++P
Sbjct: 352 PDQVSERIKRERHKKLMRTQARVSFKHNRTLVDSEEDVLVEGYSEETELLLKGRSSRQAP 411

Query: 434 WLQS-VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            +   V + + N N+GDI++++ITD     L GE+V
Sbjct: 412 DVDGLVYITAGNANVGDIVRLKITDSSDYDLIGEIV 447


>gi|285808553|gb|ADC36074.1| putative 2-methylthioadenine synthetase [uncultured bacterium 164]
          Length = 449

 Score =  398 bits (1024), Expect = e-109,   Method: Composition-based stats.
 Identities = 129/454 (28%), Positives = 208/454 (45%), Gaps = 16/454 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++    S GC  N+ DS  M       GYE  +   +AD +V+NTC   E A ++    +
Sbjct: 2   KKVGFVSLGCPKNLVDSEVMMGQLAEAGYEITSKAGEADTVVVNTCGFIESAKQESIDAI 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
                LK      G    V+VAGC+ +   E++++  P V+  +G      + +  +   
Sbjct: 62  LEATRLKTE----GHATRVIVAGCMVERYREDLVKELPEVDAFIGTSQVGEILKAADENF 117

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
              ++  T    +                +  TAF+ I EGCD+ C FC +P  RG   S
Sbjct: 118 DAGQLTATPIGNKSATYLYDEYTPRLRATQSHTAFVKIAEGCDRPCAFCSIPSMRGSFRS 177

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R    +V+EAR L   GV E+ L+ Q+ ++  G+ L GE    + L+ ++ EI  L  +R
Sbjct: 178 RRFGSIVEEARMLARQGVKEVVLIAQD-SSRYGEDL-GEVDALAALIRAIGEIDDLEWVR 235

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
              ++P  +SD  + A  +    + YL +P+Q  S  +LK M R        ++I+R+R 
Sbjct: 236 VMYAYPTHISDAFLAAVAETPKAVKYLDMPLQHASRNVLKLMKRGGNRGSLERLIERVRE 295

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             P IAI + FI GFPGET +DF   M+ V    +     F YS   GTP   +  +VD 
Sbjct: 296 RVPGIAIRTTFITGFPGETQEDFEELMEFVRNCRFDNVGVFTYSDEEGTPAYVLPNKVDP 355

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-----GKLVGRSPWLQSVV 439
            +  +R   L K+        N A +G+  +V+ E   +E      G+L G++  +   +
Sbjct: 356 KIAKQRRGRLMKEQARISKQLNAAKIGETYKVMFEGISQESDMLFQGRLPGQTQDIDGYI 415

Query: 440 LNSK-----NHNIGDIIKVRITDVKISTLYGELV 468
           L +         +G+I  VRIT+     L GE+V
Sbjct: 416 LINDVPERLEPQVGEIYDVRITEALEYDLVGEIV 449


>gi|307297843|ref|ZP_07577649.1| RNA modification enzyme, MiaB family [Thermotogales bacterium
           mesG1.Ag.4.2]
 gi|306917103|gb|EFN47485.1| RNA modification enzyme, MiaB family [Thermotogales bacterium
           mesG1.Ag.4.2]
          Length = 434

 Score =  398 bits (1024), Expect = e-109,   Method: Composition-based stats.
 Identities = 158/444 (35%), Positives = 251/444 (56%), Gaps = 13/444 (2%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +   +++GCQMN+ D+  M  +    G+E   S ++AD +++NTC +R K+ +K+Y  LG
Sbjct: 2   KVAFRTFGCQMNINDTEAMMGVLSKAGHEIAVSEEEADAVIVNTCAVRAKSEDKLYGKLG 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           +++ +K    K  G LLV V GCVA+    E+L     V+ V G +   R+ ELL RA  
Sbjct: 62  QLKAVK----KRKGRLLVGVCGCVAEKNALELLT-HKEVDFVFGTRAITRVDELLGRAES 116

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G+R ++    +++       +     R     A++TI  GC+KFC++C+VPYTRG E SR
Sbjct: 117 GERFIEMGDFIDELDSTTPRI-----RTSAHHAWITIIFGCNKFCSYCIVPYTRGREKSR 171

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           ++  ++ EAR+L  NG  EIT LGQNV++  GK L+ +  + + L+    EI G+ R+ +
Sbjct: 172 NMDDILSEARELAVNGYREITYLGQNVDS-YGKDLE-DGSSLAKLIRETIEINGIERIWF 229

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
            TS+PRD SD LI      + +   +HLPVQSGS+RILK MNR +T   Y  ++ R+++ 
Sbjct: 230 LTSYPRDFSDELIDVIASSEKVSRAIHLPVQSGSNRILKDMNRGYTREYYLDLLGRVKNR 289

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT-PGSNMLEQVDE 384
                +S+D I+GFPGET+ ++  T+ LV ++ + +     YSPR GT     M + V +
Sbjct: 290 IQGATLSTDLIIGFPGETEKEYEETVSLVKEVRFERVNLAMYSPREGTLSAKKMKDDVPQ 349

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
            VK  RL  L    +      N+  + + I+V+ E   K  GK+ GR+   + V+  ++ 
Sbjct: 350 EVKTRRLNDLLAIQKHINREENEKYLNETIDVIGEGKVKGNGKIYGRTMNNKIVIYEAEA 409

Query: 445 HNIGDIIKVRITDVKISTLYGELV 468
             IG  +K+RI  V    LYG +V
Sbjct: 410 DLIGQPVKIRIVRVSAGPLYGVIV 433


>gi|167754793|ref|ZP_02426920.1| hypothetical protein CLORAM_00297 [Clostridium ramosum DSM 1402]
 gi|167705625|gb|EDS20204.1| hypothetical protein CLORAM_00297 [Clostridium ramosum DSM 1402]
          Length = 428

 Score =  398 bits (1024), Expect = e-109,   Method: Composition-based stats.
 Identities = 151/446 (33%), Positives = 247/446 (55%), Gaps = 21/446 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +     + GC++N Y+S  M  +F   GY+ V+    AD+ V+NTC +      K    +
Sbjct: 2   KTVAFHTLGCKVNTYESNAMLKIFNEAGYQEVDFKQVADVYVINTCTVTNTGDSKSRQMI 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            +        I++     + V GC +Q   EEI  +   V VV+G Q    + + ++   
Sbjct: 62  RKA-------IRKNPKATICVVGCYSQTAPEEI-EKIEGVGVVLGTQYRSDIVKYVDEHL 113

Query: 145 -FGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
             G+ V+  D  +   KFE L+I     +R +   AFL IQ+GC+ FCT+C++PY RG  
Sbjct: 114 GTGEMVIKVDNVMNLRKFEDLNI-----DRFKNTRAFLKIQDGCNNFCTYCIIPYARGRV 168

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR    V+++A+KL+DNG  EI L G +     G G D +  +F +LL  L +IKGL R
Sbjct: 169 RSRQKESVLNQAQKLVDNGYVEIVLTGIHTA---GYGEDLDDYSFYELLVDLVKIKGLKR 225

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LR ++     +SD +I   G  ++++ +LH+P+Q+GSD  LK MNR++T  EY + I++I
Sbjct: 226 LRISSIETSQISDEIIDLIGSNEIIVDHLHVPLQAGSDATLKRMNRKYTTAEYLEKINKI 285

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           RS  P+IA ++D IVGFPGETD++F  T + + ++ Y++   F YSPR  TP + M +QV
Sbjct: 286 RSYLPNIAFTTDVIVGFPGETDEEFEETYNFIKQVNYSELHVFPYSPRKNTPAAKMKDQV 345

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
           ++ +K ER   L +  +E    F    +G+ ++VL EK  ++   L+G +     V + +
Sbjct: 346 NDQIKHERANRLLQLSKELNHEFALKQIGKTLKVLFEK--RDGEYLIGHAGDYLKVKVKT 403

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
            ++ IG+I+ ++I       L G +V
Sbjct: 404 ADNLIGEIVTIKIDKYDE-ILEGRVV 428


>gi|119491288|ref|ZP_01623342.1| hypothetical protein L8106_21864 [Lyngbya sp. PCC 8106]
 gi|119453452|gb|EAW34614.1| hypothetical protein L8106_21864 [Lyngbya sp. PCC 8106]
          Length = 440

 Score =  398 bits (1024), Expect = e-109,   Method: Composition-based stats.
 Identities = 136/447 (30%), Positives = 225/447 (50%), Gaps = 19/447 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
              +   GC+ N  D+  M  +    GY+  ++ + AD +++NTC   E A E+    + 
Sbjct: 6   TIAISHLGCEKNRIDTEHMLGLLVQAGYQVDSNEELADYVIVNTCSFIEAAREESVQTIV 65

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +   K           VV+ GC+AQ   + +L   P    VVG   Y+++ ++L+R + 
Sbjct: 66  DLAEAKKK---------VVITGCMAQHFQDALLEELPEAVAVVGTGDYHKIVDVLQRTQQ 116

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G+RV +   S E  +     V        GV A+L + EGC+  C FC++P+ RG + SR
Sbjct: 117 GERVREI--SAEPTYIADETVPRYRTTTEGV-AYLRVAEGCNYRCAFCIIPHLRGNQRSR 173

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           S+  +V EA++L + GV EI L+ Q +    G  L GE    ++LL +L ++  +  +R 
Sbjct: 174 SIESIVTEAQQLAEQGVKEIVLISQ-ITTNYGVDLYGEPK-LAELLRALGKVD-IPWVRM 230

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
             ++P  ++  +++A  D   ++PYL LP+Q     IL++MNR        +II++I+  
Sbjct: 231 HYAYPTGLTPKVMEAIQDTPNVLPYLDLPLQHSHPEILRAMNRPWQGRVNDEIIEKIKLA 290

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P+  + + FIVGFPGET+  F   +  V +  +     F +S   GTP  ++  QV + 
Sbjct: 291 LPNAVLRTTFIVGFPGETNQHFEHLLQFVKRHHFDHVGVFTFSAEEGTPAYDLPHQVPQA 350

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVLN 441
           V   R   L +  +   +  N   VG+I+EVL+E+     GKL+GRS    P +  VV  
Sbjct: 351 VMDARRDALMQVQQPISLKQNQKSVGEIVEVLVEQEQPSTGKLIGRSGRFAPDVDGVVYV 410

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                +G I+ V+ITD  +  LYG  V
Sbjct: 411 EGMARLGSIVPVKITDADVYDLYGSTV 437


>gi|219114795|ref|XP_002178193.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217409928|gb|EEC49858.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 455

 Score =  398 bits (1024), Expect = e-109,   Method: Composition-based stats.
 Identities = 166/450 (36%), Positives = 253/450 (56%), Gaps = 18/450 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYER----VNSMDDADLIVLNTCHIREKAAEKVY 81
            + +++ GCQMN+ DS R+E      G       V+     D+++LNTC IR+ A +KVY
Sbjct: 14  TYKLETMGCQMNMADSERIEGQLQGLGIRPLDPDVDKNKQPDVVILNTCSIRDHAEQKVY 73

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S++G        R ++G D+ ++VAGCVAQ EGE +LRR P V++V+GPQ   R+ +LLE
Sbjct: 74  SYIG----PHAKRKRDGEDVTIIVAGCVAQQEGEALLRRVPEVDLVMGPQYANRIGDLLE 129

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
               G +VV T+ S   +            R+  V A++ +  GC++ CTFC+VP TRG+
Sbjct: 130 DVSNGNQVVATEASHIMEDSTKP------RRQSTVAAWVNVIYGCNERCTFCIVPTTRGV 183

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR    +V E  +L++ G  EITLLGQN++A+    +   K  FSDL+  + EI GL 
Sbjct: 184 EQSRPAESIVREVTELVEQGFKEITLLGQNIDAYGRDMIP--KRKFSDLIRIVGEIPGLD 241

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           RLR+ TSHPR MS  ++ +  +        H+P QSGS+ IL +M R HT  +Y  I+DR
Sbjct: 242 RLRFVTSHPRYMSLGVVDSVAETPAACECFHIPFQSGSNEILAAMGRGHTREKYLHIVDR 301

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           IRS  PD AI++D IVGFPGET++ F  T+ L+ ++ +    +  YSPR  TP +   +Q
Sbjct: 302 IRSRIPDAAITADVIVGFPGETEEQFEDTLSLMREVVFDSVNTAAYSPRPNTPAAVWDDQ 361

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVL 440
           VD+ VK  RL  +     E          G+ +E+L+E+   +   +++GR+     V  
Sbjct: 362 VDDAVKQNRLQRINALNLEHAAQRRARMKGRTVEILVEERNVRVPTQVMGRTRHGYIVYC 421

Query: 441 NSK-NHNIGDIIKVRITDVKISTLYGELVV 469
           + + +   G ++ V I   +   L G+ V 
Sbjct: 422 DGEIDELRGKLVNVEIDTCEQYYLAGKPVA 451


>gi|237735920|ref|ZP_04566401.1| 2-methylthioadenine synthetase [Mollicutes bacterium D7]
 gi|229381665|gb|EEO31756.1| 2-methylthioadenine synthetase [Coprobacillus sp. D7]
          Length = 428

 Score =  398 bits (1024), Expect = e-109,   Method: Composition-based stats.
 Identities = 151/446 (33%), Positives = 247/446 (55%), Gaps = 21/446 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +     + GC++N Y+S  M  +F   GY+ V+    AD+ V+NTC +      K    +
Sbjct: 2   KTVAFHTLGCKVNTYESNAMLKIFNEAGYQEVDFKQVADVYVINTCTVTNTGDSKSRQMI 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA- 143
            +        I++     + V GC +Q   EEI  +   V VV+G Q    + + ++   
Sbjct: 62  RKA-------IRKNPKATICVVGCYSQTAPEEI-EKIEGVGVVLGTQYRSDIVKYVDEHL 113

Query: 144 RFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
             G+ V+  D  +   KFE L+I     +R +   AFL IQ+GC+ FCT+C++PY RG  
Sbjct: 114 ETGEMVIKVDNVMNLRKFEDLNI-----DRFKNTRAFLKIQDGCNNFCTYCIIPYARGRV 168

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR    V+++A+KL+DNG  EI L G +     G G D +  +F +LL  L +IKGL R
Sbjct: 169 RSRQKESVLNQAQKLVDNGYVEIVLTGIHTA---GYGEDLDDYSFYELLVDLVKIKGLKR 225

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LR ++     +SD +I   G  ++++ +LH+P+Q+GSD  LK MNR++T  EY + I++I
Sbjct: 226 LRISSIETSQISDEIIDLIGSNEIIVDHLHVPLQAGSDATLKRMNRKYTTAEYLEKINKI 285

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           RS  P+IA ++D IVGFPGETD++F  T + + ++ Y++   F YSPR  TP + M +QV
Sbjct: 286 RSYLPNIAFTTDVIVGFPGETDEEFEETYNFIKQVNYSELHVFPYSPRKNTPAAKMKDQV 345

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
           ++ +K ER   L +  +E    F    +G+ ++VL EK  ++   L+G +     V + +
Sbjct: 346 NDQIKHERANRLLQLSKELNHEFALKQIGKTLKVLFEK--RDGEYLIGHAGDYLKVKVKT 403

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
            ++ IG+I+ ++I       L G +V
Sbjct: 404 ADNLIGEIVTIKIDKYDE-ILEGRVV 428


>gi|253699275|ref|YP_003020464.1| MiaB-like tRNA modifying enzyme YliG [Geobacter sp. M21]
 gi|251774125|gb|ACT16706.1| MiaB-like tRNA modifying enzyme YliG [Geobacter sp. M21]
          Length = 448

 Score =  398 bits (1024), Expect = e-109,   Method: Composition-based stats.
 Identities = 138/456 (30%), Positives = 232/456 (50%), Gaps = 23/456 (5%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + ++  + S GC  N+ D+  M        YE       AD+IV+NTC   ++A ++   
Sbjct: 5   IKEKVSLVSLGCPKNLVDAEVMLGYLSRDEYEVTTDETQADIIVVNTCSFIKEAKQESID 64

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +  + + K     +    L++V GC+ Q   +E+ +  P V++ +G   Y R+ E++  
Sbjct: 65  TILDLADRK----HDARCKLLIVTGCLPQRYQQELAKELPEVDIFIGTGDYPRIAEIVAE 120

Query: 143 ARFGKRVV----DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
            +     +    D ++   D+  RL             TA+L I EGC   C++CV+P  
Sbjct: 121 KKQTDEQLCYTGDPNFVYNDEVPRLQSSPH-------YTAYLKIAEGCSNNCSYCVIPSL 173

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258
           RG   SR L+ ++ EA+ LI+ GV E+ L+ Q++ A  G+ L+G   +   L+  L++++
Sbjct: 174 RGGHRSRPLATLLAEAKTLIEGGVKELNLIAQDITA-YGRDLEGTP-SLELLIKELAKME 231

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
            L  +R   ++P  ++D LI+   D   +  YL LP+Q  SD +L +M RR    E R +
Sbjct: 232 KLKWIRLLYAYPDGVTDSLIQLIKDEPKVCKYLDLPIQHISDPVLSNMKRRSGETEIRNL 291

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           I ++R   PDIAI +  IVGFPGET +DF+  +  V++  + +   F YS   GTP + M
Sbjct: 292 IAKLRREIPDIAIRTSLIVGFPGETSEDFKKLLQFVEETRFDRLGVFCYSREEGTPAAQM 351

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-----KGKLVGRSP 433
            +QV E +K ER   L +         N   V    +VL+E   +E     KG+   ++P
Sbjct: 352 PDQVSERIKRERHKKLMRTQARVSFKHNRTLVDSEEDVLVEGFSEETELLLKGRSSRQAP 411

Query: 434 WLQS-VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            +   V + + N N+GDI++++ITD     L GE+V
Sbjct: 412 DVDGLVYITAGNANVGDIVRLKITDSSDYDLIGEIV 447


>gi|152991225|ref|YP_001356947.1| tRNA-i(6)A37 thiotransferase enzyme [Nitratiruptor sp. SB155-2]
 gi|229890577|sp|A6Q531|MIAB_NITSB RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|151423086|dbj|BAF70590.1| tRNA-i(6)A37 thiotransferase enzyme [Nitratiruptor sp. SB155-2]
          Length = 433

 Score =  398 bits (1024), Expect = e-109,   Method: Composition-based stats.
 Identities = 154/448 (34%), Positives = 243/448 (54%), Gaps = 18/448 (4%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + +R ++++ GC MNV DS  +       + YE   ++ +ADLI++NTC +REK   K++
Sbjct: 1   MKKRLYIETLGCAMNVRDSEHIIAELTQKEDYELTQNLQEADLILINTCSVREKPVHKLF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S +G     K    K      + V GC A   GEEI++++P V+ V+G +   ++ ++++
Sbjct: 61  SEIGYFNKKKKEGAK------IGVCGCTASHLGEEIIKKAPYVSFVLGARNVSKIRDVIK 114

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           + +  +  +D D S     +          R     AF+ I  GCDK CTFC+VP TRG 
Sbjct: 115 QEKAVEVDIDYDESTYAFSDF---------RTSPYKAFINISIGCDKKCTFCIVPNTRGE 165

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGL 260
           EIS     ++ E R+ +D G  EI LLGQNVN +     D   K  F+DLL  +SEI G+
Sbjct: 166 EISIPPELILQEVRRAVDTGAKEIFLLGQNVNNYGRSFSDKARKVDFTDLLRMVSEIDGV 225

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+T+ HP  M D  ++       +   +H+P+QSGS ++L+ M R +T   +     
Sbjct: 226 RRIRFTSPHPLHMDDKFLQEFATNPKICKSMHMPLQSGSTKVLRDMKRGYTKEWFLDRAM 285

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R + P++ IS+D IVGFPGE+++DF  T+D+V K+ + Q FSFKYSPR  TP  +   
Sbjct: 286 KLREMVPEVHISTDIIVGFPGESEEDFADTIDVVQKVRFEQIFSFKYSPRPLTPAKDYEN 345

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440
           Q+ + V + RL  LQ    +   S ++    ++ EV  E+  K  G + GR+     V +
Sbjct: 346 QIPDEVASRRLSYLQDLHLQMLDSISEQEKDKVYEVYFEEL-KPGGYVAGRTDNNWIVKV 404

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 +G+   VRIT     +L GELV
Sbjct: 405 KGSEELLGEFKSVRITKPGRLSLEGELV 432


>gi|330813325|ref|YP_004357564.1| tRNA-i(6)A37 methylthiotransferase [Candidatus Pelagibacter sp.
           IMCC9063]
 gi|327486420|gb|AEA80825.1| tRNA-i(6)A37 methylthiotransferase [Candidatus Pelagibacter sp.
           IMCC9063]
          Length = 437

 Score =  398 bits (1024), Expect = e-109,   Method: Composition-based stats.
 Identities = 195/446 (43%), Positives = 281/446 (63%), Gaps = 13/446 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + + F +K++GCQMN YDS R+ D+  +  Y+R+  ++ AD  + NTCHIREKA +KVYS
Sbjct: 1   MSKNFVIKTFGCQMNEYDSNRIADLLSTIDYKRIEEVEKADCFIFNTCHIREKATQKVYS 60

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +G+I+ +   +       L V+AGCVAQAE   +  +S  V++VVGPQ Y++LPEL++ 
Sbjct: 61  DIGKIKKILRGKQ---SKPLFVLAGCVAQAESSMVFEKSDFVDIVVGPQAYHKLPELIKN 117

Query: 143 ARFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
            +  K +  +T+  V DKF+ L   +   N    V++F+TIQEGCDKFC FCVVPYTRG 
Sbjct: 118 YQKNKTKSFNTNLDVSDKFDSL---ENYKNISSKVSSFITIQEGCDKFCKFCVVPYTRGP 174

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR   Q+ +E + L+D G  EI LLGQNV+ ++ K ++      S L+  ++ IK L 
Sbjct: 175 EFSRCPDQIYNEVQGLVDAGTREIILLGQNVSGYKNKDIN-----LSRLIDKVASIKKLE 229

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHP D  + LI A    D LMP LHLPVQSGS++IL+SMNR+HT   Y ++ID+
Sbjct: 230 RIRFTTSHPNDFDEDLINAFKYQDKLMPQLHLPVQSGSNKILESMNRKHTREFYLKLIDK 289

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
            R ++ DI  SSDFIVG+PGETD DF  T+DLVDK+ ++ ++SF YS R GTP  +  +Q
Sbjct: 290 FRDIKKDIEFSSDFIVGYPGETDKDFEDTLDLVDKVKFSNSYSFVYSQRPGTPAVDF-DQ 348

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           + +   A RL  LQ KL + Q  FND+ V    +VL+E   K+  +  GR+ ++Q V + 
Sbjct: 349 IPKEESATRLEVLQNKLFDLQRKFNDSKVNSKTKVLVENITKKGNQFFGRNEYMQPVFIE 408

Query: 442 SKNHNIGDIIKVRITDVKISTLYGEL 467
                 G I  + +       L+G +
Sbjct: 409 GNKCTPGQIEIIEVKSSNRHNLWGTI 434


>gi|291296231|ref|YP_003507629.1| RNA modification enzyme, MiaB family [Meiothermus ruber DSM 1279]
 gi|290471190|gb|ADD28609.1| RNA modification enzyme, MiaB family [Meiothermus ruber DSM 1279]
          Length = 440

 Score =  398 bits (1024), Expect = e-109,   Method: Composition-based stats.
 Identities = 161/444 (36%), Positives = 242/444 (54%), Gaps = 19/444 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +  + +YGCQMN YD+  +     S G E V+   +AD +++NTC +R K  EKV S LG
Sbjct: 2   KTNIITYGCQMNEYDTHLVRSELVSLGAEFVDHWREADFVLVNTCAVRGKPVEKVRSLLG 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +R  K         LLV + GC+AQ E  + + R   V+V++GP     + + LE    
Sbjct: 62  ELRKEKEK-----RPLLVGMMGCLAQLEEGQQMARKFEVDVLLGPGALTEIGKALEA--- 113

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
             R  D  +  E+    L     G      ++AF++I  GC+  CT+C+VP TRG E+SR
Sbjct: 114 KSRFWDLSF-REELTHHLPPAPQG-----ALSAFVSIIRGCNHHCTYCIVPTTRGPEVSR 167

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
               ++ E  +L   GV E+TLLGQNVN+  GK   G   +F++LL  ++++ G+ R+++
Sbjct: 168 HPDLILREVEQLKAAGVLEVTLLGQNVNS-YGKDQPGFP-SFAELLRLVAQV-GIPRIKF 224

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
           TTSHP + +D +I A  +   +  Y+HLPVQSGS+R+L+ M R +    Y   I  IR  
Sbjct: 225 TTSHPVNFTDDVIAAMAETPQICRYIHLPVQSGSNRVLRRMGREYRREWYLDRIRAIREA 284

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            PD+ +S+D IVGFPGET++DF+AT+ L D++ Y  A+ F YSPR GTP     + +   
Sbjct: 285 MPDVVLSTDIIVGFPGETEEDFQATLSLYDEVRYDSAYMFIYSPRPGTPSYKHFQDLPRE 344

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445
           VK ERL  L +K +E     N   VGQ +EVL+    K+   + G +      +L +   
Sbjct: 345 VKVERLQRLIEKQKEWSYRQNQRWVGQTVEVLVRGAAKDDSFVEGHTRGNHPTLLPAAQA 404

Query: 446 -NIGDIIKVRITDVKISTLYGELV 468
              G + +  I       L GE+V
Sbjct: 405 PRPG-LYQAVIQQATPHMLLGEVV 427


>gi|218961210|ref|YP_001740985.1| tRNA-i(6)A37 modification enzyme MiaB [Candidatus Cloacamonas
           acidaminovorans]
 gi|167729867|emb|CAO80779.1| tRNA-i(6)A37 modification enzyme MiaB [Candidatus Cloacamonas
           acidaminovorans]
          Length = 427

 Score =  398 bits (1024), Expect = e-109,   Method: Composition-based stats.
 Identities = 155/440 (35%), Positives = 250/440 (56%), Gaps = 17/440 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +F++++YGCQMNV DS  +  +    G++ V  + +ADL++ NTC +R  A E+V   + 
Sbjct: 2   KFYIETYGCQMNVADSELIASILTKAGHQEVTQISEADLLLFNTCSVRGHAEERVLGRIQ 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
              + K    KE  +L + V GC+AQ  GEEI +    V+ V+G   Y  LP++L     
Sbjct: 62  SENHRK----KENPNLKIGVVGCMAQRLGEEINKEKLTVDFVIGVDQYQHLPDILN--EE 115

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            ++ + TD      ++ +              A++TI  GC+ FC++C+VPY RG E SR
Sbjct: 116 TEKTILTDLDETQLYKGIQPAYH-----NDYCAYITIMRGCNNFCSYCIVPYVRGRERSR 170

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           S   +++E     + G  +ITLLGQNVN++    L+GE   F  LL  L+E+  + RLR+
Sbjct: 171 SWQDIIEETISAGNQGKKDITLLGQNVNSY----LNGE-VNFPRLLIILNELDEIYRLRF 225

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
            TSHP+D+S+ LI+   +   +  ++HLPVQSGSD ILK+MNR +T   Y  +++++   
Sbjct: 226 ITSHPKDLSEELIEVLANSAKICEHIHLPVQSGSDNILKAMNRNYTVQHYISLVEKLHKF 285

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P+IAI++D + GFPGET++DF+ T+ L+  I +  AF +K+SPR GT    +  QV E 
Sbjct: 286 IPNIAITTDIMTGFPGETENDFQDTLSLMKTIEFDDAFCYKFSPRPGTTAETLSNQVPEA 345

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GRSPWLQSVVLNSKN 444
            +  RL  +    R+  +  N   +G+ +EV IE   K+  K+V G++   ++ VL    
Sbjct: 346 ERLARLQQMIDLQRKISLKKNREQIGRKVEVYIESFSKKSRKMVLGKTRDFKTAVLPGTE 405

Query: 445 HNIGDIIKVRITDVKISTLY 464
            + G + ++ + D   STL 
Sbjct: 406 DDFGTLKQIEVKDATASTLI 425


>gi|21674804|ref|NP_662869.1| hypothetical protein CT1993 [Chlorobium tepidum TLS]
 gi|81790619|sp|Q8KB05|MIAB_CHLTE RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|21648022|gb|AAM73211.1| conserved hypothetical protein [Chlorobium tepidum TLS]
          Length = 444

 Score =  398 bits (1024), Expect = e-109,   Method: Composition-based stats.
 Identities = 161/449 (35%), Positives = 239/449 (53%), Gaps = 15/449 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           +P  F++ ++GCQMN  DS  +  +  ++G+       +AD+++LN+C +RE A E++ +
Sbjct: 8   MPSSFYIHTFGCQMNQADSEIVTALLRAEGFVPSADETNADIVLLNSCAVRENAEERLGN 67

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            L  ++  K    +   +L++ V GCV Q E E +    P V+ +VGP  Y  L  L+  
Sbjct: 68  ILMHLKGRK----RRCKELVIGVLGCVPQFERERVFSDYPFVDFIVGPDNYRELAGLVAG 123

Query: 143 ARFG-KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
            R    R    DY   + +  +  V     R   ++AFL +  GC+  C FCVVP TRG 
Sbjct: 124 LREAVARPALLDYDQTETYAGIEPV-----RAGSISAFLPVMRGCNNHCAFCVVPVTRGR 178

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E S    +VV E   L   G  E+TLLGQNVN+WR      +   F+ LL  +S     +
Sbjct: 179 ERSVGFERVVAEVVALEKAGFREVTLLGQNVNSWRDAE---KGLDFAGLLEGVSLAVPSM 235

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+TTSHP+D+S+ L+K       L  ++HLPVQSGS R+L  M R HT  EY   I  
Sbjct: 236 RIRFTTSHPKDISEALVKVIAARPNLCNHIHLPVQSGSSRMLDLMKRGHTREEYLDRIAM 295

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN-MLE 380
           IRS  P++AI++D I GF  ET+ D R T+ L++ +GY  AF F YS R GT  +  + +
Sbjct: 296 IRSYIPEVAITTDLIAGFCTETEKDHRETLSLMEAVGYDTAFMFHYSVRPGTWAARNLPD 355

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRSPWLQSVV 439
            V + VK  RL  + +             +G+ +EVL E   K  +  L+GR+P  + VV
Sbjct: 356 DVPDTVKKARLQEIIELQNAISREIFQREIGKTVEVLAEAESKRSESMLMGRTPENRVVV 415

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
            +    N  D + V+IT    +TL GE V
Sbjct: 416 FSRGRFNPSDTLLVKITGATSATLSGEAV 444


>gi|253578849|ref|ZP_04856120.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251849792|gb|EES77751.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 445

 Score =  398 bits (1024), Expect = e-109,   Method: Composition-based stats.
 Identities = 142/451 (31%), Positives = 222/451 (49%), Gaps = 22/451 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC  N+ DS  M  +    G+E V+   +A+ IV+NTC     A E+  + + 
Sbjct: 2   KLLFVSLGCDKNLVDSEEMLGLLTGNGFEIVDDETEAEAIVVNTCCFINDAKEESVNTIL 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +   K    K G   ++VV GC+AQ    EI+   P V+ V+G  +Y  + + +  A  
Sbjct: 62  EMAEYK----KTGSCKVLVVTGCMAQRYKNEIIEEVPEVDAVLGTTSYGDILKAIREAME 117

Query: 146 GKRVV---DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           GK      D DY  E   +R+    G +        +L I EGCDK CT+C++P  RG  
Sbjct: 118 GKHFQEFKDIDYLPEKLGKRVLTTGGHF-------GYLKIAEGCDKHCTYCIIPKLRGKF 170

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            S  + ++V +A+++ + GV E+ L+ Q      G  + G+K +   LL  L +IKG+  
Sbjct: 171 RSVPMERLVTQAKEMAEEGVKELILVAQETT-VYGTDIYGKK-SLHILLKELCKIKGIRW 228

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R    +P ++ D LI+   +   +  YL LP+Q  SDRILK M RR T  E  +I++++
Sbjct: 229 IRVLYCYPEEIYDELIQTMKEEKKICHYLDLPIQHASDRILKRMGRRTTQAELVEIVNKL 288

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R   PDI + +  I GFPGET +D    M  VD++ + +   F YSP   TP + M +QV
Sbjct: 289 RREIPDIVLRTTLISGFPGETQEDHEELMSFVDEMEFDRLGVFTYSPEEDTPAATMPDQV 348

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSV 438
            E VK  R   + +  +E         +GQ + V+IE    ++   +GR+    P +   
Sbjct: 349 AEEVKEARRDEIMELQQEISYDKGTDRIGQELLVMIEGKVADESAYIGRTYGDAPKVDGY 408

Query: 439 VLNSKNHNI--GDIIKVRITDVKISTLYGEL 467
           +       +  GD  KVR+T      L GEL
Sbjct: 409 IFVQTGELLMTGDFAKVRVTGALEYDLIGEL 439


>gi|47227354|emb|CAF96903.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 522

 Score =  398 bits (1024), Expect = e-109,   Method: Composition-based stats.
 Identities = 147/469 (31%), Positives = 241/469 (51%), Gaps = 41/469 (8%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ + ++YGCQMNV D+     +   +GY+R   +  AD+++L TC IREKA + +++ L
Sbjct: 56  RKVYFETYGCQMNVNDTEIAWSILQKKGYQRTFDLSQADVVLLVTCSIREKAEQTIWNRL 115

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            ++  +K  R+K    + + + GC+A+    E+L R  +V+++ GP  Y  LP LL  A 
Sbjct: 116 QQLTAMKRRRLKSQTPMKIGILGCMAERLKTELLEREKLVDILAGPDAYRDLPRLLAVAD 175

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G++  +   S+E+ +  +  V       +  +A+++I  GCD  CT+C+VP+TRG E S
Sbjct: 176 GGQQASNVLLSLEETYADIMPVHHA---PQAYSAYVSIMRGCDNMCTYCIVPFTRGRERS 232

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG---------------------E 243
           R +  +++E  +L D GV E+TLLGQNVN++R    +                       
Sbjct: 233 RPVRSILEEVSQLSDQGVKEVTLLGQNVNSYRDTSHEQFGGTELTQLSRGFQTVYRTKQG 292

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
              FSDLL  +S I   +R+R+T+ HP+D  D +++   +   +   +HLP QSGS +IL
Sbjct: 293 GLRFSDLLDQVSRIDPDMRIRFTSPHPKDFPDEVLQLIAERKNICQQIHLPAQSGSSKIL 352

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           K+M R +T   Y  ++  I+ + P +++SSDFI GF GE ++D + T+ L+ ++GY   F
Sbjct: 353 KAMRRGYTREAYLDLVKNIKKIIPGVSLSSDFISGFCGEKEEDHQQTLSLIREVGYNVGF 412

Query: 364 SFKYSPRLGTPG-SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422
            F YS R  T     + + V   VK  RL       RE+    N A V     VL+E   
Sbjct: 413 LFAYSMRKKTQAFHRLQDDVPAEVKRRRLEECIGVFREEAARVNGALVRSTQLVLVEGVS 472

Query: 423 -----------KEKGKLVGRSPWLQSVVLN-----SKNHNIGDIIKVRI 455
                      +    L GR+     VV       +   N GD + V++
Sbjct: 473 LPFLANKDQSKRSADDLCGRTDGNMRVVFPRADSSAAPINAGDYVLVKV 521


>gi|78043523|ref|YP_360009.1| putative tRNA modifying protein [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|123770593|sp|Q3ACX5|RIMO_CARHZ RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|77995638|gb|ABB14537.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 438

 Score =  398 bits (1023), Expect = e-109,   Method: Composition-based stats.
 Identities = 132/449 (29%), Positives = 224/449 (49%), Gaps = 20/449 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           ++F+ S GC  N  DS  +  +  S+GY R  + +++DL+++NTC     A E+    + 
Sbjct: 2   KYFILSLGCTKNQADSEVIMGILESKGYVRSLNPEESDLLIVNTCGFIAAAIEESIEEIL 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            + +LK           ++VAGC+ Q EG+E+ +  P V++   P+    L +LL     
Sbjct: 62  NLVHLKK------PGQKILVAGCLVQREGKELAKHLPEVDLFFTPREINNLDKLLADLGE 115

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
             ++V ++         L++      +   V  ++ I +GCD  CT+C +P  RG   SR
Sbjct: 116 NNKLVLSE------PGFLNLEKKPRAKSNEVYRYIKIADGCDNRCTYCTIPAIRGKYTSR 169

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            L  +++E +  +  G+ EI L+ Q+  A  G  L GE     +LL  +  IKG   +R 
Sbjct: 170 PLDDILEEIKDTLKQGIKEIILVAQDTTA-YGIDLYGE-FKLVELLRKIGSIKGNFWVRL 227

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
              +P  ++  LI    +   ++ Y+ +P+Q     ILK M R+ ++ E    ++R+R  
Sbjct: 228 MYLYPDKITPELINEIKENPKVIKYVDVPLQHIHPEILKKMGRKGSSEEIISTLERLRKE 287

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            PDI I + FIVGFPGET++ F   +D V K  + +  +F Y    GTP + M  Q+ + 
Sbjct: 288 IPDITIRTTFIVGFPGETEEQFNYLLDFVKKFKFNRLGAFPYYREKGTPAAKMKGQIPKK 347

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVLN 441
           VK +R   L +  +E  ++ N A VG+ I V++EK  + +   +GR+    P +  ++  
Sbjct: 348 VKEQRYEKLMEVQQEISLNLNKALVGKKIPVIVEKKIRGENLYLGRTYMDAPEIDGIIEI 407

Query: 442 SKNHNI--GDIIKVRITDVKISTLYGELV 468
                +  G II V ITD  I  L GE +
Sbjct: 408 KAEKRLKKGQIINVLITDYDIYDLKGEFI 436


>gi|261414864|ref|YP_003248547.1| RNA modification enzyme, MiaB family [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|261371320|gb|ACX74065.1| RNA modification enzyme, MiaB family [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|302326764|gb|ADL25965.1| tRNA-i(6)A37 modification enzyme MiaB [Fibrobacter succinogenes
           subsp. succinogenes S85]
          Length = 440

 Score =  398 bits (1023), Expect = e-109,   Method: Composition-based stats.
 Identities = 160/448 (35%), Positives = 248/448 (55%), Gaps = 13/448 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +++ + +YGCQMN YDS  +       G    N+ +DAD+I++NTC +REKA E     +
Sbjct: 2   KKYHLATYGCQMNEYDSAMIAQELDMCGCVETNNQEDADIIIVNTCSVREKAEETAIVNI 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            +++ L+    K+  D+ VVV GC+A+  G E+L+R   VN +VGP  Y ++PELL    
Sbjct: 62  SKLKYLR----KKNPDVKVVVCGCMAKNRGPELLKRLKNVNYIVGPDQYRKIPELLFGDA 117

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
                        D+    + +      +  V+AF+ IQ GC+K C++C+VPY RG E  
Sbjct: 118 QSPLHKTHHKMFIDEDRDENYLGEYAKLQNDVSAFVAIQRGCNKRCSYCIVPYLRGPEKY 177

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R +  V+ E ++  D G+ E+ LLGQ VNA++    D     F+ LL  +SEI G+ R+R
Sbjct: 178 RDMDDVLTEVKRAADKGITEVMLLGQTVNAYKTPNAD-----FTTLLTKVSEIGGIKRIR 232

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +T+ HPR  ++ LI    +   +  Y H+P+QSGSD ILK M R+H   +Y  +I+++RS
Sbjct: 233 FTSPHPRHYTNELIDVLLNNPKVCHYAHIPLQSGSDAILKKMRRQHNMEQYMTVIEQLRS 292

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             P  AIS+D I GF GETD+DF  T+   +   +  A+ F YSPR GT   N  E +  
Sbjct: 293 KDPYYAISTDVICGFVGETDEDFEQTIKAFEACQFDTAYMFIYSPRKGTESFNEAEILTP 352

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSPWLQSVVLNSK 443
             K+ R   L +      +  N   +G+  E+L+E    ++K +LVG++   + V+   +
Sbjct: 353 EEKSARHSRLVELQNAITLKRNQMMIGRTEEILVEHGSTRDKTELVGKTDNFKKVIFKPE 412

Query: 444 NHNI---GDIIKVRITDVKISTLYGELV 468
              I   GD +KV+I D++  TL G LV
Sbjct: 413 EGRIIKPGDYVKVKIDDIRGWTLRGTLV 440


>gi|221140004|ref|ZP_03564497.1| hypothetical protein SauraJ_00040 [Staphylococcus aureus subsp.
           aureus str. JKD6009]
 gi|302751406|gb|ADL65583.1| radical SAM domain protein [Staphylococcus aureus subsp. aureus
           str. JKD6008]
          Length = 448

 Score =  398 bits (1023), Expect = e-109,   Method: Composition-based stats.
 Identities = 139/436 (31%), Positives = 229/436 (52%), Gaps = 17/436 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
                + GC++N Y++  +  +F    YERV+   +AD+ V+NTC +     +K    + 
Sbjct: 3   TVAFHTLGCKVNHYETEAIWQLFKEANYERVDFEANADVFVINTCTVTNTGDKKSRQIIR 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R        I++  D ++ V GC AQ    EI+   P V+VVVG Q  ++L   ++  R 
Sbjct: 63  RA-------IRQNPDAVICVTGCYAQTSSAEIM-EIPGVDVVVGTQDRHKLLGYIDEFRK 114

Query: 146 GKRVVDT--DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            ++ ++   +     K+E L +            A L IQEGC+ FCTFC++P+ RG+  
Sbjct: 115 ERQPINGVGNIMKNRKYEELDVP----YFTDRTRASLKIQEGCNNFCTFCIIPWARGLMR 170

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR   +VV++A +L+++G  EI L G +     G G D +    + LL  L  I GL R+
Sbjct: 171 SRDPEKVVEQATQLVNSGYKEIVLTGIHTG---GYGQDLKDYNLAQLLRDLETINGLERI 227

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R ++     ++D +I        ++ +LH+P+QSGSD +LK M R++T   + + + ++ 
Sbjct: 228 RISSIEASQLTDEVIDVLERSTKVVRHLHIPLQSGSDTVLKRMRRKYTMDRFSERLTKLH 287

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              PD+A++SD IVGFPGET+ +F+ T D + K  +++   F YSPR+GTP   M +Q+D
Sbjct: 288 KALPDLAVTSDVIVGFPGETEAEFQETYDFIVKHKFSELHVFPYSPRIGTPAVRMDDQID 347

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
           E +K ER+  L     +    +       ++EV+ E+ G  +G LVG +     V     
Sbjct: 348 EEIKNERVHKLITLSNQLGKLYASKFDQDVLEVIPEEQGDTEGTLVGYADNYMKVQFEGD 407

Query: 444 NHNIGDIIKVRITDVK 459
              IG I+KV+IT   
Sbjct: 408 ESLIGQIVKVKITQAN 423


>gi|317418553|emb|CBN80591.1| CDK5 regulatory subunit-associated protein 1 [Dicentrarchus labrax]
          Length = 569

 Score =  398 bits (1023), Expect = e-109,   Method: Composition-based stats.
 Identities = 154/474 (32%), Positives = 256/474 (54%), Gaps = 46/474 (9%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ + ++YGCQMNV D+     +   +GY+R   + +AD+++L TC IREKA + +++ L
Sbjct: 94  RKVYFETYGCQMNVNDTDIAWSILQRKGYQRTVDLREADVVLLVTCSIREKAEQTIWNRL 153

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             ++ +K  R+K    + + + GC+A+    EIL R  +V+V+ GP  Y  LP LL  A 
Sbjct: 154 QELKAMKKRRLKTHTPMKIGILGCMAERLKTEILEREKLVDVLAGPDAYRDLPRLLTVAD 213

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G++  +   S+E+ +  +  V   ++  +G +AF++I  GCD  C++C+VP+TRG E S
Sbjct: 214 GGQQASNVLLSLEETYADVMPV---HHAPQGRSAFVSIMRGCDNMCSYCIVPFTRGRERS 270

Query: 205 RSLSQVVDEARKLIDN--------GVCEITLLGQNVNAWRGKGLD------------GEK 244
           R +S +++E R L +         GV E+TLLGQNVN++R    +            G K
Sbjct: 271 RPVSSILEEVRMLSEQASYNLNTKGVKEVTLLGQNVNSYRDTSEEQFCSSDLTQLSRGFK 330

Query: 245 C---------TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPV 295
                      FSDLL  +S I   +R+R+T+ HP+D  D ++    +   +   +HLP 
Sbjct: 331 TVYRTKQGGLRFSDLLDRVSRIDPDMRIRFTSPHPKDFPDEVLHLIAERGNICQQIHLPA 390

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
           QSGS ++L++M R +T   Y  ++  I+++ P++++SSDFI GF GET+DD + T+ L+ 
Sbjct: 391 QSGSSKVLEAMRRGYTREAYLDLVKNIKAIMPEVSLSSDFISGFCGETEDDHQQTLSLIR 450

Query: 356 KIGYAQAFSFKYSPRLGTPG-SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQII 414
           ++GY   F F YS R  T     + + V   VK +RL    +  RE+    N A +G + 
Sbjct: 451 EVGYNVGFLFAYSMRKKTHAFHRLQDDVPAEVKQQRLAECIRVFREEAARVNAALIGSMQ 510

Query: 415 EVLIEKHGKEKGK-LVGRSPWLQSVVLNSKN------------HNIGDIIKVRI 455
            VL+E   K   K L GR+     V+   ++             N GD + V++
Sbjct: 511 LVLVEGESKRSAKDLCGRTDGNMKVIFPKEDVAAQNAESNTAPVNAGDYVLVKV 564


>gi|86148942|ref|ZP_01067174.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Campylobacter jejuni
           subsp. jejuni CF93-6]
 gi|85840300|gb|EAQ57557.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Campylobacter jejuni
           subsp. jejuni CF93-6]
          Length = 433

 Score =  398 bits (1023), Expect = e-109,   Method: Composition-based stats.
 Identities = 153/446 (34%), Positives = 241/446 (54%), Gaps = 18/446 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ F+++ GC MNV DS  M       + Y     + +ADLI++NTC +REK   K++S 
Sbjct: 4   KKLFIQTLGCAMNVRDSEHMIAELTQKENYVLTEDIKEADLILINTCSVREKPVHKLFSE 63

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G    +K    K      + V GC A   G EI +R+P V+ V+G +   ++ + ++  
Sbjct: 64  VGGFEKVKKEGAK------IGVCGCTASHLGNEIFKRAPYVDFVLGARNISKITQAIKTP 117

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           +F    +D D S     +          R     +++ I  GCDK CT+C+VP+TRG EI
Sbjct: 118 KFMGVDIDYDESEFAFADF---------RNSIYKSYINISIGCDKHCTYCIVPHTRGDEI 168

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVR 262
           S   + +  EA+K I+ G  EI LLGQNVN +  +  +  +K  FSDLL  LS I+GL R
Sbjct: 169 SIPFNIIYKEAQKAIEKGAKEIFLLGQNVNNYGKRFRNEHKKMDFSDLLEELSTIEGLER 228

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+T+ HP  M D  ++   +   +   +H+P+QSGS  ILK+M R +T   Y     ++
Sbjct: 229 IRFTSPHPLHMDDKFLEVFANNPKVCKSMHMPLQSGSSEILKAMKRGYTKEWYLNRALKL 288

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R + P+++IS+D IV FPGE++ DF  T+D+++K+ + Q FSFKYS R  T  + M  Q+
Sbjct: 289 RELCPNVSISTDIIVAFPGESEKDFEETVDVLEKVRFEQIFSFKYSKRPLTKAATMPNQI 348

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
           DE + + RL  LQ +  E           +  +VL E+  +    + GR+     V +  
Sbjct: 349 DEEIASRRLSTLQNRHSEILDKIVKKQENKTFKVLFEEL-RAGNSIAGRTDNNFLVQVEG 407

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
               +G   +V+IT+ K   LYGE+V
Sbjct: 408 SEELLGQFKEVKITNAKRMVLYGEIV 433


>gi|229891230|sp|A6QCD0|MIAB_SULNB RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
          Length = 431

 Score =  398 bits (1023), Expect = e-109,   Method: Composition-based stats.
 Identities = 163/446 (36%), Positives = 244/446 (54%), Gaps = 18/446 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ F+++ GC MNV DS  M       + YE   ++++ADLI++NTC +REK   K++S 
Sbjct: 2   KKLFIETLGCAMNVRDSEHMIAELNQKEPYELTQNVEEADLIIINTCSVREKPVAKLFSE 61

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G     K           + VAGC A   G++I++R+P V+ V+G +   ++ E++++ 
Sbjct: 62  IGVFNKYKK------PGAKIGVAGCTASHLGKDIIKRAPSVDFVIGARNVSKITEVVDK- 114

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
              K  V+ D   ++     S    G  R     A + I  GCDK CTFC+VP TRG EI
Sbjct: 115 ---KHAVEIDTDYDE-----STYAFGEYRTNPFKAMVNISIGCDKSCTFCIVPATRGDEI 166

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-RGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           S     +V E  K +  G  E+ LLGQNVN + R  G   EK  F+ LL  +S+I+GL R
Sbjct: 167 SIPSDLLVQEITKAVATGAKEVMLLGQNVNNYGRRFGATEEKIDFTGLLQKISKIEGLER 226

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+T+ HP  M D  I+       +   +H+P+QSGS  +LK M R +T   +    ++I
Sbjct: 227 IRFTSPHPLHMDDAFIQEFASNPKICKQIHVPLQSGSTSLLKVMKRGYTKENFLGRCEKI 286

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R + P+  IS+D IVGFPGET+ DF  TMD+++K+ + Q FSFKYSPR  T  +   EQ+
Sbjct: 287 RMLCPEATISTDIIVGFPGETEADFEDTMDVLEKVRFEQLFSFKYSPRPHTEAAEFEEQI 346

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
           D  +  ERL  LQ +  E      DA +G++ EV  ++  K  G++ GRS   + V +  
Sbjct: 347 DNKIAGERLTRLQTRHTEILDEIMDAQLGKVHEVYFDEL-KSNGRVSGRSDDGKLVFVEG 405

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
               +G I+ VRI       L G LV
Sbjct: 406 SEELLGKIVDVRIIKTSRGALDGVLV 431


>gi|254432004|ref|ZP_05045707.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Cyanobium sp. PCC
           7001]
 gi|197626457|gb|EDY39016.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Cyanobium sp. PCC
           7001]
          Length = 467

 Score =  398 bits (1023), Expect = e-109,   Method: Composition-based stats.
 Identities = 130/464 (28%), Positives = 218/464 (46%), Gaps = 24/464 (5%)

Query: 14  VSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIR 73
           +S         +       GC+ N  D+  M  +    GY       +A+++V+NTC   
Sbjct: 1   MSSPRQPGSPRKTIAFSHLGCEKNRVDTEHMLGLLAEAGYGVSADEGEANVVVVNTCSFI 60

Query: 74  EKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTY 133
           + A E+    L  +               +++AGC+AQ   EE+L   P    +VG   Y
Sbjct: 61  QDAREESVRTLVELAEQGKE---------LIIAGCLAQHFQEELLESLPEAKAIVGTGDY 111

Query: 134 YRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC 193
             +  +LER   G+RV     +     +        Y       A+L + EGCD  C FC
Sbjct: 112 QHIVSVLERVEAGERVNQVSATPTFVGDEHLP---RYRTTSEAVAYLKVAEGCDYRCAFC 168

Query: 194 VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS 253
           ++P  RG + SR +  +V EAR+L   GV E+ L+ Q +    G  L G K   ++LL +
Sbjct: 169 IIPRLRGDQRSRPIESIVAEARQLAAQGVKELVLISQ-ITTNYGLDLYG-KPRLAELLRA 226

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
           L+E++ +  +R   ++P  ++  ++ A+ ++  ++PYL LP+Q     +L++MNR   A 
Sbjct: 227 LAEVE-IPWIRVHYAYPTGLTPEVLAAYREVPNVVPYLDLPLQHSHPDVLRAMNRPWQAN 285

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
               ++ RIR   PD  + + FIVGFPGET++ F+  +D V +  +     F +SP  GT
Sbjct: 286 VTGGLLHRIREQLPDAVLRTTFIVGFPGETEEHFQHLLDFVAEQRFDHVGVFTFSPEDGT 345

Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR-- 431
           P + + + V   + A R   L    +    + N A VG+I++VLIE+     G+++GR  
Sbjct: 346 PAAELPDAVAPELAAARKDRLMTVQQPIAAARNQAWVGRIVDVLIEQENPATGEMLGRCS 405

Query: 432 --SPWLQSV--VLNSKNHN---IGDIIKVRITDVKISTLYGELV 468
             +P +     V           G ++ VR+T      L GE+V
Sbjct: 406 RFAPEVDGEVRVHPGPGGLCAAPGTMVPVRLTAADTYDLIGEVV 449


>gi|326495462|dbj|BAJ85827.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 586

 Score =  398 bits (1023), Expect = e-109,   Method: Composition-based stats.
 Identities = 160/508 (31%), Positives = 247/508 (48%), Gaps = 49/508 (9%)

Query: 8   IGVAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGY-ERVNSMDDADLIV 66
           +      S+     +   R + ++YGCQMNV D   +  +   +GY + V   + A++I 
Sbjct: 62  VSEPQTDSESGTATVKKGRIYHETYGCQMNVNDMEIVLSIMKKEGYNDIVPDPESAEIIF 121

Query: 67  LNTCHIREKAAEKVYSFLGRIRNLKNSRI--------KEGGDLLVVVAGCVAQAEGEEIL 118
           +NTC IR+ A +KV+  L     LK            K      + V GC+A+   E+IL
Sbjct: 122 INTCAIRDNAEQKVWQRLNYFWFLKRQWKTNVAGGRSKSLRPPKIAVLGCMAERLKEKIL 181

Query: 119 RRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTA 178
               +V+VV GP  Y  LP LL+   +G++ ++T  S+E+ +  ++ V         VTA
Sbjct: 182 DSDKMVDVVCGPDAYRDLPRLLQEVDYGQKGINTLLSLEETYADITPVRIS---DNSVTA 238

Query: 179 FLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK 238
           F+++  GC+  C+FC+VP+TRG E SR +S VV E  +L   GV E+ LLGQNVN++   
Sbjct: 239 FVSVMRGCNNMCSFCIVPFTRGRERSRPVSSVVREVGELWYAGVKEVMLLGQNVNSYNDT 298

Query: 239 GL-----DGEKC-----------------TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDC 276
                   G+                    F+DLL  LS     +R R+T+ HP+D  D 
Sbjct: 299 SEVEELEPGKNWQLSEGFSSRCKVKNTGLRFADLLDQLSLEYPEMRFRFTSPHPKDFPDE 358

Query: 277 LIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFI 336
           L+    D   +   +HLP QSGS  +L+ M R +T   Y +++ +IR+V PD+ +SSDFI
Sbjct: 359 LLYLMRDRHNICKLIHLPAQSGSTEVLERMKRGYTREAYLELVQKIRNVIPDVGLSSDFI 418

Query: 337 VGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN-MLEQVDENVKAERLLCLQ 395
            GF  ET+DD   T+ LV  +GY  A+ F YS R  T       + V  +VK  RL  L 
Sbjct: 419 SGFCEETEDDHADTLSLVRAVGYDMAYMFAYSMREKTHAHRNYEDDVPNDVKQRRLAELI 478

Query: 396 KKLREQQVSFNDACVGQIIEVLIEKHGKE--KGKLVGRSPWLQSVVLN------------ 441
              RE      D+ +G    VL+E   K   + +L G++     V               
Sbjct: 479 NTFRETTRKIYDSQIGTTQVVLVEGPNKRAPETELFGKTDRGHRVSFTSLPVTHTSEGDG 538

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELVV 469
           ++   +GD ++V+I     ++L GE + 
Sbjct: 539 ARKPVVGDFVEVKILRSSTASLSGEPIA 566


>gi|258424004|ref|ZP_05686886.1| MiaB-like tRNA modifying enzyme [Staphylococcus aureus A9635]
 gi|257845625|gb|EEV69657.1| MiaB-like tRNA modifying enzyme [Staphylococcus aureus A9635]
          Length = 448

 Score =  398 bits (1023), Expect = e-109,   Method: Composition-based stats.
 Identities = 138/436 (31%), Positives = 229/436 (52%), Gaps = 17/436 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
                + GC++N Y++  +  +F    YERV+   +AD+ V+NTC +     +K    + 
Sbjct: 3   TVAFHTLGCKVNHYETEAIWQLFKEANYERVDFEANADVFVINTCTVTNTGDKKSRQIIR 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R        I++  D ++ V GC AQ    EI+   P V+VVVG Q  ++L   ++  R 
Sbjct: 63  RA-------IRQNPDAVICVTGCYAQTSSAEIM-EIPGVDVVVGTQDRHKLLGYIDEFRK 114

Query: 146 GKRVVDT--DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            ++ ++   +     K+E L +            A L IQEGC+ FCTFC++P+ RG+  
Sbjct: 115 ERQPINGVGNIMKNRKYEELDVP----YFTDRTRASLKIQEGCNNFCTFCIIPWARGLMR 170

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR   +VV++A +L+++   EI L G +     G G D +    + LL  L  I GL R+
Sbjct: 171 SRDPEKVVEQATQLVNSEYKEIVLTGIHTG---GYGQDLKDYNLAQLLRDLETINGLERI 227

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R ++     ++D +I        ++ +LH+P+QSGSD +LK M R++T   + + + ++ 
Sbjct: 228 RISSIEASQLTDEVIDVLERSTKVVRHLHIPLQSGSDTVLKRMRRKYTMDRFSERLTKLH 287

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              PD+A++SD IVGFPGET+ +F+ T D + K  +++   F YSPR+GTP + M +Q+D
Sbjct: 288 KALPDLAVTSDVIVGFPGETEAEFQETYDFIVKHKFSELHVFPYSPRIGTPAARMDDQID 347

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
           E +K ER+  L     +    +       ++EV+ E+ G  +G LVG +     V     
Sbjct: 348 EEIKNERVHKLITLSNQLGKLYASKFDQDVLEVIPEEQGDTEGTLVGYADNYMKVQFEGD 407

Query: 444 NHNIGDIIKVRITDVK 459
              IG I+KV+IT   
Sbjct: 408 ESLIGQIVKVKITQAN 423


>gi|325479264|gb|EGC82360.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Anaerococcus prevotii
           ACS-065-V-Col13]
          Length = 449

 Score =  398 bits (1023), Expect = e-108,   Method: Composition-based stats.
 Identities = 159/448 (35%), Positives = 257/448 (57%), Gaps = 17/448 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +++ + ++GCQMN +DS R+  +    GYE+  + + AD I+ NTC +RE A  K+Y  +
Sbjct: 14  KKYNITTFGCQMNEHDSERISYILEELGYEKTENRESADFILFNTCLVRENAELKLYGQV 73

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAE--GEEILRRSPIVNVVVGPQTYYRLPELLER 142
             ++ LK    KE  + ++ V+GC+ Q     + I+ +   V+++ G +    L +L+ R
Sbjct: 74  SSLKKLK----KEHPEKIIAVSGCMMQTSTARQVIIDKHKEVDIIFGTKNINSLADLIFR 129

Query: 143 A-RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
                +RV+D   S +D  +        YN      A++ I  GCD FC++C+VP +RG 
Sbjct: 130 YLETNERVIDI--STDDVKDDFV----NYNTLNNFQAYVNIMRGCDNFCSYCIVPESRGR 183

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR  S +++E   L+  G  E+TLLGQNVN+  G   D +  TF +LL  +S++ GL 
Sbjct: 184 EESRRPSAILEEVEHLVSEGYKEVTLLGQNVNS-YGNKADFD-MTFPELLQKVSDVAGLK 241

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           RLR+TTSHP+D+SD LI+   + D +  Y HLP+QSGS ++LK MNR++   +Y +   +
Sbjct: 242 RLRFTTSHPKDLSDELIEVIKNNDNICKYFHLPLQSGSSKVLKDMNRKYDQEKYIERAKK 301

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R   P IAIS+D IVG+P ET++DF  T+ +  +I Y  A++FKYSPR  T  + +   
Sbjct: 302 LRKEIPGIAISTDIIVGYPTETEEDFEETLKVCREIAYDSAYTFKYSPRPKTRAAKLTP- 360

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVL 440
           +++++  +R   L   L       N   +G+ +EVL+E   K     L GR+   + V +
Sbjct: 361 IEDDIVQDRFDRLLDTLYPIFYEKNKQYIGKTVEVLLESESKNNPDILTGRTDTFKLVHV 420

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
            +    IG+ +KV+IT+    T+ GELV
Sbjct: 421 KADKKLIGEFVKVKITENTSFTISGELV 448


>gi|148925837|ref|ZP_01809524.1| hypothetical protein Cj8486_0449c [Campylobacter jejuni subsp.
           jejuni CG8486]
 gi|145844823|gb|EDK21927.1| hypothetical protein Cj8486_0449c [Campylobacter jejuni subsp.
           jejuni CG8486]
          Length = 433

 Score =  398 bits (1023), Expect = e-108,   Method: Composition-based stats.
 Identities = 152/446 (34%), Positives = 239/446 (53%), Gaps = 18/446 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ F+++ GC MNV DS  M       + Y     + +ADLI++NTC +REK   K++S 
Sbjct: 4   KKLFIQTLGCAMNVRDSEHMIAELTQKENYALTEDIKEADLILINTCSVREKPVHKLFSE 63

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G    +K    K      + V GC A   G EI +R+P V+ V+G +   ++ + ++  
Sbjct: 64  VGSFEKVKKEGAK------IGVCGCTASHLGNEIFKRAPYVDFVLGARNISKITQAIKTP 117

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           +F    +D D S     +          R     +++ I  GCDK CT+C+VP+TRG EI
Sbjct: 118 KFMGVDIDYDESEFAFADF---------RNSIYKSYINISIGCDKHCTYCIVPHTRGDEI 168

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVR 262
           S   + +  EA+K ++ G  EI LLGQNVN +  +  +  +K  FSDLL  LS I+ L R
Sbjct: 169 SIPFNIIYKEAQKAVEKGAKEIFLLGQNVNNYGKRFRNEHKKMDFSDLLEELSTIEDLER 228

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+T+ HP  M D  ++   +   +   +H+P+QSGS  ILK+M R +T   Y     ++
Sbjct: 229 IRFTSPHPLHMDDKFLEVFANNPKVCKSMHMPLQSGSSEILKAMKRGYTKEWYLNRALKL 288

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R + P+++IS+D IV FPGE++ DF  TMD+++K+ + Q FSFKYS R  T  + M  Q+
Sbjct: 289 RELCPNVSISTDIIVAFPGESEKDFEETMDVLEKVRFEQIFSFKYSKRPLTKAATMPNQI 348

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
           DE   + RL  LQ +  E           +  +VL E+  +    + GR+     V +  
Sbjct: 349 DEETASRRLSTLQNRHSEILDEIVKKQENKTFKVLFEEL-RAGNSIAGRTDNNFLVQVEG 407

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
               +G   +V+IT+ K   LYGE+V
Sbjct: 408 SEELLGQFKEVKITNAKRMVLYGEIV 433


>gi|88597143|ref|ZP_01100379.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Campylobacter jejuni
           subsp. jejuni 84-25]
 gi|121613595|ref|YP_001000165.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Campylobacter jejuni
           subsp. jejuni 81-176]
 gi|167005123|ref|ZP_02270881.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Campylobacter jejuni
           subsp. jejuni 81-176]
 gi|218562113|ref|YP_002343892.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Campylobacter
           jejuni subsp. jejuni NCTC 11168]
 gi|123141627|sp|Q0PB55|MIAB_CAMJE RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|229890471|sp|A1VYH4|MIAB_CAMJJ RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|87250048|gb|EAQ73006.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Campylobacter jejuni
           subsp. jejuni 81-176]
 gi|88190832|gb|EAQ94805.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Campylobacter jejuni
           subsp. jejuni 84-25]
 gi|112359819|emb|CAL34606.1| putative tRNA 2-methylthioadenosine synthase [Campylobacter jejuni
           subsp. jejuni NCTC 11168]
 gi|284925725|gb|ADC28077.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Campylobacter jejuni
           subsp. jejuni IA3902]
 gi|315928214|gb|EFV07531.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Campylobacter jejuni
           subsp. jejuni DFVF1099]
 gi|315930005|gb|EFV09148.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Campylobacter jejuni
           subsp. jejuni 305]
          Length = 433

 Score =  398 bits (1023), Expect = e-108,   Method: Composition-based stats.
 Identities = 153/446 (34%), Positives = 241/446 (54%), Gaps = 18/446 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ F+++ GC MNV DS  M       + Y     + +ADLI++NTC +REK   K++S 
Sbjct: 4   KKLFIQTLGCAMNVRDSEHMIAELTQKENYALTEDIKEADLILINTCSVREKPVHKLFSE 63

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G    +K    K      + V GC A   G EI +R+P V+ V+G +   ++ + ++  
Sbjct: 64  VGGFEKVKKEGAK------IGVCGCTASHLGNEIFKRAPYVDFVLGARNISKITQAIKTP 117

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           +F    +D D S     +          R     +++ I  GCDK CT+C+VP+TRG EI
Sbjct: 118 KFMGVDIDYDESEFAFADF---------RNSIYKSYINISIGCDKHCTYCIVPHTRGDEI 168

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVR 262
           S   + +  EA+K I+ G  EI LLGQNVN +  +  +  +K  FSDLL  LS I+GL R
Sbjct: 169 SIPFNIIYKEAQKAIEKGAKEIFLLGQNVNNYGKRFRNEHKKMDFSDLLEELSTIEGLER 228

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+T+ HP  M D  ++   +   +   +H+P+QSGS  ILK+M R +T   Y     ++
Sbjct: 229 IRFTSPHPLHMDDKFLEVFANNPKVCKSMHMPLQSGSSEILKAMKRGYTKEWYLNRALKL 288

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R + P+++IS+D IV FPGE++ DF  T+D+++K+ + Q FSFKYS R  T  + M  Q+
Sbjct: 289 RELCPNVSISTDIIVAFPGESEKDFEETVDVLEKVRFEQIFSFKYSKRPLTKAATMPNQI 348

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
           DE + + RL  LQ +  E           +  +VL E+  +    + GR+     V +  
Sbjct: 349 DEEIASRRLSTLQNRHSEILDKIVKKQENKTFKVLFEEL-RAGNSIAGRTDNNFLVQVEG 407

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
               +G   +V+IT+ K   LYGE+V
Sbjct: 408 SEELLGQFKEVKITNAKRMVLYGEIV 433


>gi|34558083|ref|NP_907898.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Wolinella
           succinogenes DSM 1740]
 gi|81653788|sp|Q7MR25|MIAB_WOLSU RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|34483801|emb|CAE10798.1| conserved hypothetical protein-2-methylthioadenine synthetase
           [Wolinella succinogenes]
          Length = 433

 Score =  398 bits (1023), Expect = e-108,   Method: Composition-based stats.
 Identities = 149/448 (33%), Positives = 242/448 (54%), Gaps = 17/448 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++ F+++ GC MNV DS  M     + +GY   +   +ADLI++NTC +REK   K++
Sbjct: 1   MSKKLFIQTLGCAMNVRDSEHMIAELEAKEGYTLTDDPKEADLILINTCSVREKPERKLF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S +G+    K    K      + V GC A   G EIL+++P V+ V+G +   ++  ++ 
Sbjct: 61  SEIGQFSKEKKEEAK------IGVCGCTASHLGSEILKKAPSVSFVLGARNVSKISRVIH 114

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           + +  +   D D S                 +    A + I  GCDK C +C+VP+TRG 
Sbjct: 115 QEKAVEVATDYDDS---------SYVFATGSRNDYKAMVNISIGCDKKCAYCIVPHTRGQ 165

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE-KCTFSDLLYSLSEIKGL 260
           EIS     ++ EAR+L   GV EI LLGQNVN +  +      K +F++LL  LS+++G+
Sbjct: 166 EISVPSDLILGEARRLASAGVKEILLLGQNVNHYGRRFSSAHPKISFTELLRELSQVEGI 225

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            RLR+T+ HP  M D  ++       +   +H+P+QSGS RIL  M R ++   +   ++
Sbjct: 226 ERLRFTSPHPLHMDDEFLEEFASNPKICKSIHMPLQSGSTRILSLMRRGYSQEWFINRVE 285

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           R++++ P+  I +D IVGFPGE+++DF  TM++++++ +   +SF YSPR  T  ++   
Sbjct: 286 RLKALAPETTIGTDIIVGFPGESEEDFLGTMEVLERVRFETLYSFVYSPRPHTEAASWEN 345

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440
            VDE V +ERL  LQ + +E     N   VG I  VL E   +++G   GR+   + V +
Sbjct: 346 LVDEEVASERLHRLQARHKEILEELNQKEVGAIHSVLWEHQRRDEGWCEGRTDTGKMVRM 405

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 +G I  VRI +   + L GE +
Sbjct: 406 KGGEEFLGRITPVRIKEAYRAFLIGEPL 433


>gi|77917652|ref|YP_355467.1| 2-methylthioadenine synthetase [Pelobacter carbinolicus DSM 2380]
 gi|123729547|sp|Q3A8J5|RIMO_PELCD RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|77543735|gb|ABA87297.1| SSU ribosomal protein S12P methylthiotransferase [Pelobacter
           carbinolicus DSM 2380]
          Length = 455

 Score =  398 bits (1023), Expect = e-108,   Method: Composition-based stats.
 Identities = 131/456 (28%), Positives = 223/456 (48%), Gaps = 15/456 (3%)

Query: 19  DQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAE 78
              +  ++  + S GC  N+ D+  M        +E       AD+I++NTC     A E
Sbjct: 4   SDSVEKRKVSMISLGCAKNLVDAEVMLGYLPQDRFEITTDEAQADIIIVNTCGFISDAKE 63

Query: 79  KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPE 138
           +    L      K    K G   L+VV GC++Q   E++ +  P V++++G     R+ E
Sbjct: 64  ESVETLLEAIEYK----KSGNCTLLVVTGCLSQRYAEDMAKELPEVDILLGTGDVPRILE 119

Query: 139 LLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
           L+E    G+ V  +    +  ++  +            + ++ I EGC+  C++C++P  
Sbjct: 120 LIEAHDRGEDVRQSVGLPQYLYDHTTPRVASSPF---YSTYVKIAEGCNNLCSYCIIPQL 176

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258
           RG   SRS++ VV E  +L+  G  E+ L+ Q++ A+     DG   +   LL  L +I 
Sbjct: 177 RGPLRSRSIASVVAEVERLVAAGAQEVNLIAQDITAFGADRHDG--ASLEGLLRELVKIS 234

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
            L  LR   ++P  +SD LI+     + +  Y  +P+Q   DR+L  MNRR      R +
Sbjct: 235 ELRWLRLLYAYPDGISDELIELVATEEKICSYFDVPLQHIDDRVLARMNRRVGEDTIRDL 294

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           I R+R   PD+ + + FIVGFPGETD +F   +  V++  + +   F+YS    TP +++
Sbjct: 295 IHRMRQRIPDLTLRTSFIVGFPGETDAEFAKLLAFVEEGHFDRVGVFRYSREEDTPAASL 354

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-----KGKLVGRSP 433
            +QV E VK  R   L K  +      N A +G++  VL+E + +E      G+ + ++P
Sbjct: 355 PDQVPEGVKKSRYNKLMKAQQRVSFRRNRALIGRVEPVLVEGYSEETELLLSGRSIRQAP 414

Query: 434 WLQS-VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            +   V + +   ++G I+ +RITD     L GE+V
Sbjct: 415 DVDGQVYITAGQADVGQIVPLRITDSSEYDLIGEIV 450


>gi|21356207|ref|NP_650002.1| CG6345 [Drosophila melanogaster]
 gi|32129453|sp|Q9VGZ1|CK5P1_DROME RecName: Full=CDK5RAP1-like protein
 gi|7299338|gb|AAF54531.1| CG6345 [Drosophila melanogaster]
 gi|17945319|gb|AAL48716.1| RE15838p [Drosophila melanogaster]
          Length = 583

 Score =  398 bits (1022), Expect = e-108,   Method: Composition-based stats.
 Identities = 151/480 (31%), Positives = 249/480 (51%), Gaps = 39/480 (8%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++   + YGCQMN  D+  +  +    GY R    ++AD+I+L TC +R+ A +++ + L
Sbjct: 92  RKVHFEVYGCQMNTNDTEVVFSILKENGYLRCQEPEEADVIMLVTCAVRDGAEQRIRNRL 151

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             +R +KN R      L + + GC+A+   E++L +   V+V+ GP +Y  LP LL  +R
Sbjct: 152 KHLRAMKNKRSTRRHPLQLTLLGCMAERLKEKLLEQEQCVDVIAGPDSYKDLPRLLAISR 211

Query: 145 F-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             G   ++   S+++ +  +  V          TAF++I  GCD  CT+C+VP+TRG E 
Sbjct: 212 HYGNSAINVLLSLDETYADVMPVRLN---SESPTAFVSIMRGCDNMCTYCIVPFTRGRER 268

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT----------------- 246
           SR L+ +V E + L + GV E+TLLGQNVN++R +    E+ +                 
Sbjct: 269 SRPLASIVAEVKALAEQGVKEVTLLGQNVNSYRDRTAQEEQDSLKATPVPGFSTVYKPKT 328

Query: 247 ----FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
               F+ LL S+++    +R+R+T+ HP+D SD +++   D   +   LHLP QSG+ ++
Sbjct: 329 GGTPFAALLRSVAQAVPDMRIRFTSPHPKDFSDEVLEVIRDHPNVCKQLHLPAQSGNTQV 388

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           L+ M R ++   Y +++  IR   P++ +SSDFI GF GET+++F+ T+ L+ ++ Y  A
Sbjct: 389 LERMRRGYSREAYLELVQHIRQFLPNVGLSSDFICGFCGETEEEFQDTVSLIQQVQYNVA 448

Query: 363 FSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKH 421
           + F YS R  T       + V  NVK ERL  + +  RE     +    GQ   +LIE  
Sbjct: 449 YLFAYSMREKTTAHRRYKDDVPINVKNERLQRMVQVFREGATQLHRKMEGQEQLILIEGK 508

Query: 422 GKEKG-KLVGRSPWLQSVVLNS------------KNHNIGDIIKVRITDVKISTLYGELV 468
            K       GR+     V++ S            K+  +GD + VRI +     L G  +
Sbjct: 509 SKRSDAHWFGRNDANIKVIVPSIYVPISGDSTARKSFGVGDFLAVRIEESNSQVLKGTPL 568


>gi|320159796|ref|YP_004173020.1| hypothetical protein ANT_03860 [Anaerolinea thermophila UNI-1]
 gi|319993649|dbj|BAJ62420.1| hypothetical protein ANT_03860 [Anaerolinea thermophila UNI-1]
          Length = 444

 Score =  398 bits (1022), Expect = e-108,   Method: Composition-based stats.
 Identities = 122/451 (27%), Positives = 221/451 (49%), Gaps = 14/451 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + +RF++ S GC  N  DS  M  +    G+E  +   +AD++++NTC     A ++   
Sbjct: 1   MSKRFYLVSLGCAKNTVDSQSMASLLQEAGFEPTDRQKEADVLIVNTCGFIGPARQESLD 60

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            L  +   K          L+V AGC+ +   +++ +  P ++ ++G + +  + +L+++
Sbjct: 61  TLRDLARHKKKHQ------LLVAAGCLTERYRQQVAQEVPGIDGILGTRRWMDIVDLVQQ 114

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRK-RGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
            R G++  +  Y + +         G      +G +A+L I +GC + C FC +P  +G 
Sbjct: 115 LRPGRKYPEPLYHLPETPTVGKDEKGVLRAAIQGASAYLKIADGCRRPCAFCAIPLIKGT 174

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
            +SR    ++ EAR L D GV E+ L+ Q+     G  L  +    + L   L E   + 
Sbjct: 175 AVSRPPEVILQEARILQDEGVKELLLIAQDTT-DYGHDLGMKDGLATLLEGILREAPEIP 233

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
            +R   ++P  ++D LI+   +   ++PYL +P+Q    + L+ M R        Q + +
Sbjct: 234 WIRILYAYPGYVTDRLIEVMANHPQIVPYLDMPLQHAHPQTLRRMRRPSNMEWVYQTLAK 293

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R+  P++A+ + FIVG+PGET+++F+  +D V +I +     F +S   GT    + + 
Sbjct: 294 MRAAIPNLALRTTFIVGYPGETEEEFQTLLDFVQEIQFDHVGIFTFSFEKGTASEPLGDP 353

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQS 437
           +   VK ERL  L +      ++ N + VGQI  VLIE   +  G  +GR    +P +  
Sbjct: 354 IPAEVKQERLARLAEVQERVSLARNQSYVGQIQPVLIEGFDR--GIAIGRAPHDAPEIDG 411

Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           +V       +G+I+ VRIT      L G LV
Sbjct: 412 LVFVEGEAPVGEIVPVRITGAMTHDLTGVLV 442


>gi|326203617|ref|ZP_08193481.1| MiaB-like tRNA modifying enzyme YliG [Clostridium papyrosolvens DSM
           2782]
 gi|325986437|gb|EGD47269.1| MiaB-like tRNA modifying enzyme YliG [Clostridium papyrosolvens DSM
           2782]
          Length = 446

 Score =  398 bits (1022), Expect = e-108,   Method: Composition-based stats.
 Identities = 124/452 (27%), Positives = 227/452 (50%), Gaps = 17/452 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + ++  + S GC  N+ DS  M  M     YE VN+ +DA+++++NTC   E A ++  +
Sbjct: 1   MKKKIGIVSLGCPKNLVDSEIMLGMLSHADYEIVNNKEDANVLIVNTCGFIESAQQESIN 60

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +  +     +  K     +++V GC+A+   E+IL + P V+ V+G   Y  + E++  
Sbjct: 61  TILEM-----ADEKGHNCEVLIVTGCMAERYKEKILEQIPEVDAVLGTGNYKEIAEVINL 115

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           A  G++ V   Y   D+ + L       + K+ V  +L I EGCD  CT+C++P+ RG  
Sbjct: 116 AYMGEKTVA--YGKLDETDYLDQERVISSAKQSV--YLKISEGCDNRCTYCIIPFLRGKY 171

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR +  +V EA  L   G  EI ++ Q+     G  L G+K    +L+ ++S+I G+  
Sbjct: 172 RSRKMESLVREAELLAQKGAKEIIIVAQDST-RYGIDLYGKKM-LPELIRNISDINGIEW 229

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R    +P +++D LI+       +  YL +P+Q  SDR+LK M RR T  + +Q+++++
Sbjct: 230 IRLLYCYPEEINDELIEEIAKNPKVCKYLDIPIQHASDRVLKQMGRRGTICDIKQVLNKL 289

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R     I I +  IVGFPGET++DF   +  + +    +   F YS   GT  + +  Q+
Sbjct: 290 REKVSGITIRTSLIVGFPGETEEDFEELIAFLKEYRLDRVGVFTYSKEDGTAAAKLKGQI 349

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSV 438
            + +K  R   + +         N    G++ + +++    +     GR+    P +  V
Sbjct: 350 PKRIKLNRQKKILELQNTISREINQDRNGKVFKTIVDGIADDGIFYYGRTYAEAPEIDGV 409

Query: 439 VL--NSKNHNIGDIIKVRITDVKISTLYGELV 468
           +   +++  +IG    V+I + +   L GE++
Sbjct: 410 IYFTSAEELSIGSFTNVKILNSEDYDLIGEVI 441


>gi|266623302|ref|ZP_06116237.1| RNA modification enzyme, MiaB family [Clostridium hathewayi DSM
           13479]
 gi|288864920|gb|EFC97218.1| RNA modification enzyme, MiaB family [Clostridium hathewayi DSM
           13479]
          Length = 446

 Score =  398 bits (1022), Expect = e-108,   Method: Composition-based stats.
 Identities = 134/448 (29%), Positives = 223/448 (49%), Gaps = 15/448 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC  N+ D+  M  +    GY   +   +AD+IV+NTC     A E+  + + 
Sbjct: 2   KLLCISLGCDKNLVDTEMMLGLLNRDGYTFTDDEYEADVIVINTCCFIGDAKEESVNTIL 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +  +K      G    ++V GC+AQ   +EI+   P V+ ++G  TY  +  +L     
Sbjct: 62  EMAQMKE----VGKCKALIVTGCLAQRYKQEIVDEIPEVDGILGTTTYDEISHVLAETLD 117

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G+  V   + ++   E   +         G  AFL I EGCDK CT+C++P  RG   S 
Sbjct: 118 GREHVQCFHDLDIIPE---VKTDRVITTGGHYAFLKIAEGCDKHCTYCIIPSLRGNFRSV 174

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            + ++V EA+ L D GV E+ L+ Q      G  L G+K +  +LL  L  I G+  +R 
Sbjct: 175 PMERLVSEAQSLADQGVKELILVAQETT-LYGVDLYGKK-SLPELLKKLCRISGIQWIRI 232

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
              +P +++D LI+     D +  Y+ +P+Q  SD IL+ M RR +  + +++I ++RS 
Sbjct: 233 QYCYPEEITDELIQTMKTEDKICHYIDMPIQHASDTILRRMGRRTSRAQLKEMIGKLRSE 292

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            PDIAI +  I GFPGET++D    M+ VD++ + +   F YS    TP +   +QV + 
Sbjct: 293 IPDIAIRTTLISGFPGETEEDHEILMEFVDEMEFERLGVFAYSAEEDTPAAGFPDQVLQE 352

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVL- 440
           VK ER   + +  +E     + + VG+ +EV+IE    ++   VGR+    P +  ++  
Sbjct: 353 VKEERRDAIMELQQEISFDHSQSMVGRSLEVMIEGKVADENAYVGRTYMDGPGVDGMIFI 412

Query: 441 -NSKNHNIGDIIKVRITDVKISTLYGEL 467
              +    G  ++ R+T      L GE+
Sbjct: 413 QTGEELMSGTFVRARVTGALEYDLIGEI 440


>gi|225378030|ref|ZP_03755251.1| hypothetical protein ROSEINA2194_03690 [Roseburia inulinivorans DSM
           16841]
 gi|225210031|gb|EEG92385.1| hypothetical protein ROSEINA2194_03690 [Roseburia inulinivorans DSM
           16841]
          Length = 441

 Score =  398 bits (1022), Expect = e-108,   Method: Composition-based stats.
 Identities = 132/449 (29%), Positives = 218/449 (48%), Gaps = 18/449 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC  N+ D+  M  M    G E  N   +AD+I++NTC     A E+  + + 
Sbjct: 2   KLLFVSLGCDKNLVDTEFMLGMLRDDGIEITNDETEADIIIVNTCCFINDAKEESVNTIL 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +   K    K G    ++V GC+AQ   EEI    P V+ ++G  +Y  + + +  A  
Sbjct: 62  EMAEYK----KTGPLKALIVTGCLAQRYKEEIKTEIPEVDAILGTNSYEDIVKAVHEALG 117

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYN-RKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
           G     T Y      E L  +    +    G  A+L I EGC+K CT+C++PY RG   S
Sbjct: 118 G-----TFYENFKTLEGLPSIHTKRSVTTGGHFAYLKIAEGCNKRCTYCIIPYIRGNYRS 172

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
             +  ++ +A++L+ NG  E+ L+ Q      G  L GEK +   LL  L++I GL  +R
Sbjct: 173 VPMEDLIGQAKELVANGAKELILVAQETT-LYGIDLYGEK-SLHKLLDELNKINGLFWIR 230

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
               +P ++ + LI +    + +  YL +P+Q  +D +LK M RR +  +  +II  +R 
Sbjct: 231 IMYCYPEEIYEDLIDSMIRNEKVCHYLDIPIQHSNDTMLKRMGRRTSHDDLVRIITHLRE 290

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             PDI + +  I GFPGET +     M  ++ + + +  +F YSP  GTP +   +QVDE
Sbjct: 291 RIPDITLRTTLICGFPGETQEIHEELMQFINDMEFDRLGAFTYSPEEGTPAAAFEDQVDE 350

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVL 440
            +K +    + +   E     N+   G+ + V IE   ++    VGR+    P +   + 
Sbjct: 351 ELKKDWQADVMELQEEVIFDKNEEMKGRELYVFIEGQVEDDNAYVGRTYRDAPDIDGYIF 410

Query: 441 NSKNHNI--GDIIKVRITDVKISTLYGEL 467
            + +  +  GDI+KV++T      L GE+
Sbjct: 411 INTDETLMTGDIVKVKVTGAYEYDLIGEI 439


>gi|110598152|ref|ZP_01386430.1| tRNA-i(6)A37 modification enzyme MiaB [Chlorobium ferrooxidans DSM
           13031]
 gi|110340284|gb|EAT58781.1| tRNA-i(6)A37 modification enzyme MiaB [Chlorobium ferrooxidans DSM
           13031]
          Length = 428

 Score =  398 bits (1022), Expect = e-108,   Method: Composition-based stats.
 Identities = 157/434 (36%), Positives = 245/434 (56%), Gaps = 14/434 (3%)

Query: 36  MNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRI 95
           MN  DS  M  +    GY    S  +A +I+LNTC +RE A E++  +L  +  +K  + 
Sbjct: 1   MNQADSAIMAALLVEDGYVPAESEGEAGIILLNTCAVRENAVERIEHYLQHLLGMKRKQK 60

Query: 96  KEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYS 155
               DL++ VAGC+ Q + EE+   SP ++ + GP TY  LP L+ +AR GKR    +++
Sbjct: 61  ----DLILGVAGCIPQYQREEMFSMSPAIDFLAGPDTYRSLPLLISQARSGKRAASLEFN 116

Query: 156 VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEAR 215
             + +  +        R+  +TAF+ +  GC+  C +CVVP+TRG E S ++S V+DE R
Sbjct: 117 PAETYAGIDP-----RRQGLITAFVPVMRGCNNMCAYCVVPFTRGRERSHTMSSVLDEVR 171

Query: 216 KLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSD 275
           K+  +G  EITLLGQNVN++     D     F+ LL ++S     +R+R+TTSHP+D+S+
Sbjct: 172 KVAASGYREITLLGQNVNSYSAPDRD---MDFAGLLEAVSRQAPELRIRFTTSHPKDISE 228

Query: 276 CLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDF 335
            L++       +  ++HLPVQSGS R+L  MNR HT  +YR+ I  IRSV PD+++S+D 
Sbjct: 229 SLVRTIARRPNICNHIHLPVQSGSSRVLGLMNRGHTIEQYREKIALIRSVIPDVSLSTDL 288

Query: 336 IVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN-MLEQVDENVKAERLLCL 394
           I GF GE + D + T+ L+  I +  A+ F YS R GT  +  + + V E VK  RL  +
Sbjct: 289 IAGFCGEDEADHQLTLKLLSDIRFDAAYMFFYSTRPGTLAARTLEDDVPEAVKKRRLQEI 348

Query: 395 QKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNSKNHNIGDIIKV 453
                +         +G ++EVL E   +    +L+GR+   ++VV + K +  GD++ V
Sbjct: 349 IDLQNDISGQLLQQSIGSVVEVLAESESRRSAAQLMGRTDTNRAVVFDRKGYQPGDLVSV 408

Query: 454 RITDVKISTLYGEL 467
            IT    +T+ G  
Sbjct: 409 LITSATSATMTGTP 422


>gi|167766692|ref|ZP_02438745.1| hypothetical protein CLOSS21_01198 [Clostridium sp. SS2/1]
 gi|317497520|ref|ZP_07955839.1| MiaB-like tRNA modifying enzyme YliG [Lachnospiraceae bacterium
           5_1_63FAA]
 gi|167711629|gb|EDS22208.1| hypothetical protein CLOSS21_01198 [Clostridium sp. SS2/1]
 gi|291558365|emb|CBL37165.1| SSU ribosomal protein S12P methylthiotransferase
           [butyrate-producing bacterium SSC/2]
 gi|316895203|gb|EFV17366.1| MiaB-like tRNA modifying enzyme YliG [Lachnospiraceae bacterium
           5_1_63FAA]
          Length = 448

 Score =  398 bits (1022), Expect = e-108,   Method: Composition-based stats.
 Identities = 131/448 (29%), Positives = 217/448 (48%), Gaps = 13/448 (2%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC  N+ DS  M  +    GY   +    AD+IV+NTC     A E+  + + 
Sbjct: 2   KILFISLGCDKNLVDSEVMLGLLTKHGYTLTDDETQADVIVINTCCFIHDAKEESINTIL 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +   K   +K      +VVAGC+A+   +EIL+  P ++ V+G  +Y  + E +  A  
Sbjct: 62  EMAQYKEQNLK-----ALVVAGCLAERYKDEILKEIPEIDAVLGTTSYDSIVEAVNTALE 116

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                  ++     +   +             A+L I EGCDK C++C++P  RG   S 
Sbjct: 117 ENTGEHFEHYESIDYLPDNSEVERVVTTGNHMAYLKIAEGCDKRCSYCIIPKIRGRFRSV 176

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            + ++++EA++L   GV E+ L+ Q      GK L GEK     LL+ L +I+G+  +R 
Sbjct: 177 PMQELLNEAKRLASEGVKELVLVAQETT-LYGKDLTGEKQ-LPLLLHELCKIEGIEWIRL 234

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
              +P +++D LIK     + +  Y+ +P+Q   +RIL+ M RR +  +   +I ++R  
Sbjct: 235 LYCYPEEITDELIKVIKTEEKVCNYIDMPIQHSENRILQRMGRRTSREDLVAVIKKLRKE 294

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            PDI I +  I GFPGE+ +D    M+ V++  + +   F YSP   T  +   +Q+DE 
Sbjct: 295 IPDITIRTTLITGFPGESQEDHEGLMNFVEECQFDRLGVFTYSPEEDTLAATFEDQIDEE 354

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVLN 441
           VK ER   L    +E         VG+ I+V++E +  E    VGRS    P +   V  
Sbjct: 355 VKEERRDELMSLQQEISYEHTQQLVGKTIKVMVEGYLFEDDIYVGRSYMDAPKVDGCVFI 414

Query: 442 SKNHNI--GDIIKVRITDVKISTLYGEL 467
           +    +  GD + V+IT  +   + GE+
Sbjct: 415 NSPEELMTGDFVYVKITQGREYDVIGEV 442


>gi|195330093|ref|XP_002031743.1| GM26169 [Drosophila sechellia]
 gi|194120686|gb|EDW42729.1| GM26169 [Drosophila sechellia]
          Length = 583

 Score =  397 bits (1021), Expect = e-108,   Method: Composition-based stats.
 Identities = 150/480 (31%), Positives = 245/480 (51%), Gaps = 39/480 (8%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++   + YGCQMN  D+  +  +    GY R    ++AD+I+L TC +R+ A +++++ L
Sbjct: 92  RKVHFEVYGCQMNTNDTEVVFSILKENGYMRCQEPEEADVIMLVTCAVRDGAEQRIWNRL 151

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             +R +KN R      L + + GC+A+   E++L +   V+V+ GP +Y  LP LL  +R
Sbjct: 152 KHLRAMKNKRSTRRHPLQLTLLGCMAERLKEKLLEQEQCVDVIAGPDSYKDLPRLLAISR 211

Query: 145 F-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             G   ++   S+++ +  +  V          TAF++I  GCD  CT+C+VP+TRG E 
Sbjct: 212 HYGNSAINVLLSLDETYADVMPVRLN---SESPTAFVSIMRGCDNMCTYCIVPFTRGRER 268

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE-------------------- 243
           SR L+ +V E + L + GV E+TLLGQNVN++R +    E                    
Sbjct: 269 SRPLASIVAEVKALAEQGVKEVTLLGQNVNSYRDRSAQEEQESLKATPVPGFSTVYKPKA 328

Query: 244 -KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
               F+ LL S+++    +R+R+T+ HP+D SD +++   D   +   LHLP QSG+ ++
Sbjct: 329 GGTPFAALLRSVAQAVPEMRIRFTSPHPKDFSDEVLEVIRDHPNVCKQLHLPAQSGNTQV 388

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           L+ M R ++   Y +++  IR   PD+ +SSDFI GF GET+++F+ T  L+ ++ Y  A
Sbjct: 389 LERMRRGYSREAYLELVQHIRQFLPDVGLSSDFICGFCGETEEEFQDTESLIQQVQYNVA 448

Query: 363 FSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKH 421
           + F YS R  T       + V  NVK ERL  + +  R+     +    G+   +LIE  
Sbjct: 449 YLFAYSMREKTTAHRRYKDDVPINVKNERLKRMVQVFRDGAKQLHRKMEGKEQLILIEGK 508

Query: 422 GKE-KGKLVGRSPWLQSVVLNSKNHNI------------GDIIKVRITDVKISTLYGELV 468
            K       GR+     V++ S    I            GD + VRI +     L G  +
Sbjct: 509 SKRSDSHWFGRNDANIKVIVPSIEVPISGDSTARKSFGVGDFLAVRIEESNSQVLKGTPL 568


>gi|225028441|ref|ZP_03717633.1| hypothetical protein EUBHAL_02715 [Eubacterium hallii DSM 3353]
 gi|224954239|gb|EEG35448.1| hypothetical protein EUBHAL_02715 [Eubacterium hallii DSM 3353]
          Length = 465

 Score =  397 bits (1021), Expect = e-108,   Method: Composition-based stats.
 Identities = 139/463 (30%), Positives = 218/463 (47%), Gaps = 25/463 (5%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +     S GC  N+ DS +M  +    GY       +AD IV+NTC     A E+    +
Sbjct: 2   KNVLFVSLGCDKNLVDSEKMLGLLNEAGYRVAQEESEADAIVVNTCCFIHDAKEESVETI 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL----PELL 140
             +   K    K+G    ++V GC+AQ   +EI +  P V+ V+G   Y  +     E+L
Sbjct: 62  LEMAEWK----KKGRLKALIVTGCMAQRYQDEIQQEIPEVDAVIGTTGYTEIVPILDEIL 117

Query: 141 ERARFGKRVVDTDYSVEDKFERL---------SIVDGGYNRKRGVTAFLTIQEGCDKFCT 191
             A   ++    +   E  F            S+ D       G TA+L I EGC+K CT
Sbjct: 118 AEAEASQKEAAVEEPKEKSFVNCCPSIDLLPASLADKRVVTTGGYTAYLKIAEGCNKRCT 177

Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLL 251
           +C++PY RG   S  +  +++EARKL + GV E+ L+ Q      G    G K    +LL
Sbjct: 178 YCIIPYIRGHYRSFPMEDLLEEARKLAEGGVKELILIAQETT-VYGMDCYGRKA-LPELL 235

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
             L EI+G+  +R    +P +++D LI        +  YL +P+Q   D ILK M RR  
Sbjct: 236 TKLCEIEGIEWIRILYCYPEEITDELIAVMKKEKKICHYLDIPIQHSEDTILKRMGRRTN 295

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
             E   +++++R   PDI + +  I GFPGET+++F+  +D VD + + +   F YS   
Sbjct: 296 RAELVSLVEKLRKEIPDIVLRTTLITGFPGETEEEFKNMVDFVDSMEFDRLGVFPYSAEE 355

Query: 372 GTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR 431
           GT  + M  Q+ E VK  R   +    +E       + +   + VLIE +  E    +GR
Sbjct: 356 GTKAAEMDGQITEEVKESRRDEIMALQQEISADKAASRIDDEMSVLIEGYLYEDDIYIGR 415

Query: 432 S----PWLQS-VVLNSKNHNI-GDIIKVRITDVKISTLYGELV 468
           +    P +   V + ++   I GDI+ VRIT      L G+++
Sbjct: 416 TYMDAPKVDGNVFVRAEEELISGDIVPVRITGANEYDLMGDVI 458


>gi|229824790|ref|ZP_04450859.1| hypothetical protein GCWU000182_00139 [Abiotrophia defectiva ATCC
           49176]
 gi|229791119|gb|EEP27233.1| hypothetical protein GCWU000182_00139 [Abiotrophia defectiva ATCC
           49176]
          Length = 515

 Score =  397 bits (1021), Expect = e-108,   Method: Composition-based stats.
 Identities = 166/461 (36%), Positives = 253/461 (54%), Gaps = 30/461 (6%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           ++GCQMN  DS ++  +    G+E        D ++LNTC IRE A +KVY  LG ++ L
Sbjct: 60  TFGCQMNFRDSEKIAGILEKIGFENTEDKSP-DFVILNTCTIRENADQKVYGNLGYLKKL 118

Query: 91  KNSRIKEGGDLLVVVAGCVAQ--AEGEEILRRSPIVNVVVGPQTYYRLPELL-------- 140
           K        ++++ + GC+ Q     +++      ++++ G    Y+L EL+        
Sbjct: 119 KE----LNPNMIIALCGCMMQETTVVQKLRESYSFIDLIYGTHNIYKLAELVFAMFALKS 174

Query: 141 -----ERARFGKRVVDTDYSVEDKFERLSIV-DGGYNRKRGVTAFLTIQEGCDKFCTFCV 194
                   + GK  +     V+   +   IV D    RK    A + I  GCD FCT+C+
Sbjct: 175 YAAHHPVKKNGKYKIKHSMLVDIWKDTDKIVEDLPDERKYSFKASVNITYGCDNFCTYCI 234

Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK---CTFSDLL 251
           VPY RG E SR    +V E + L D GV EI LLGQNVN+  GKGL+GEK    TF++LL
Sbjct: 235 VPYVRGRERSRRPGDIVKEVKCLADAGVIEIMLLGQNVNS-YGKGLEGEKGEPVTFANLL 293

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
             + +++G+ R+R+ T HP+D SD LI+   D + +  ++HLP Q+GS+ +L+ MNRR+T
Sbjct: 294 RMVEKVEGIKRIRFMTPHPKDFSDELIEVIADSEKICKHIHLPFQAGSNNVLRRMNRRYT 353

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
              Y ++  +I++  PDIA+++D IVGFPGET++DF  T+D+V ++ Y  A+ F+YS R 
Sbjct: 354 KESYLELAGKIKTRIPDIALTTDIIVGFPGETEEDFEDTLDVVKEVRYQSAYMFEYSKRT 413

Query: 372 GTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-G 430
           GTP + M +QVD      R   LQ  + E         VG + EVL E+   E+  ++ G
Sbjct: 414 GTPAATMEDQVDAEAVKRRFKRLQDTVAEYADDKFGNKVGCMAEVLAEEVNSEEPLIITG 473

Query: 431 RSPWLQSVVL----NSKNHNIGDIIKVRITDVKISTLYGEL 467
           R      V      ++K   IG ++KV+IT+     L GEL
Sbjct: 474 RMSDNTLVHFKVPTDNKEDYIGKLLKVKITENCRFYLMGEL 514


>gi|16331757|ref|NP_442485.1| hypothetical protein slr0082 [Synechocystis sp. PCC 6803]
 gi|2501537|sp|Q55803|RIMO_SYNY3 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|1001718|dbj|BAA10555.1| slr0082 [Synechocystis sp. PCC 6803]
          Length = 443

 Score =  397 bits (1021), Expect = e-108,   Method: Composition-based stats.
 Identities = 130/444 (29%), Positives = 211/444 (47%), Gaps = 19/444 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
              +   GC+ N  DS  M  +    GY+   + + AD +++NTC   + A ++    L 
Sbjct: 6   TIAINHLGCEKNRIDSEHMLGLLVEAGYQVDANEELADYVIVNTCSFIQDARQESVRTLV 65

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +   K           +V++GC+AQ   E++L   P    VVG   Y  + +++ R   
Sbjct: 66  ELAEAKKK---------IVISGCLAQHFQEQLLEEIPEAVAVVGTGDYQNIVDIIRRTEQ 116

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G+RV     +     +        Y       A+L + EGCD  C FC++P  RG + SR
Sbjct: 117 GQRVKAISPNPSFIADENLP---RYRTTNEAIAYLRVAEGCDYRCAFCIIPQLRGKQRSR 173

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            +  +V EA +L   GV E+ L+ Q +    G  L GE    ++LL +L ++  +  +R 
Sbjct: 174 PIESIVAEAEQLASQGVKELILISQ-ITTNYGLDLYGEPK-LAELLQALGKVD-IPWIRI 230

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
             ++P  ++  +I+A  D   ++PYL LP+Q     IL++MNR         II R+++ 
Sbjct: 231 HYAYPTGLTPKVIEAIRDTPNVLPYLDLPLQHSHPDILRAMNRPWQGQVNDDIITRLKTA 290

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            PD  + + FIVGFPGET++ F   +D V +  +     F +SP  GT   ++   V E 
Sbjct: 291 LPDAVLRTTFIVGFPGETEEHFGHLLDFVQRHQFDHVGVFTFSPEEGTAAFDLPNAVPEE 350

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVLN 441
           V  +R   L    +      N AC+GQ ++VLIE+     G+ +GRS    P +  +V  
Sbjct: 351 VMGDRRDRLMALQQPISAQKNAACLGQTLDVLIEQENPSTGEFIGRSTRFAPEVDGLVYV 410

Query: 442 SKNHNIGDIIKVRITDVKISTLYG 465
             N N+ +I+ V IT      LYG
Sbjct: 411 KGNANLNEIVPVVITATDDYDLYG 434


>gi|194902322|ref|XP_001980672.1| GG17285 [Drosophila erecta]
 gi|190652375|gb|EDV49630.1| GG17285 [Drosophila erecta]
          Length = 586

 Score =  397 bits (1021), Expect = e-108,   Method: Composition-based stats.
 Identities = 148/483 (30%), Positives = 245/483 (50%), Gaps = 42/483 (8%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++   + YGCQMN  D+  +  +    GY R    ++AD+I+L TC +R+ A +++++ L
Sbjct: 92  RKVHFEVYGCQMNTNDTEVVFSILKESGYLRCQEPEEADVIMLVTCAVRDGAEQRIWNRL 151

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             +R +KN R      L + + GC+A+   E++L +   V+V+ GP +Y  LP LL  +R
Sbjct: 152 KHLRAMKNKRSTRRHPLQLTLLGCMAERLKEKLLEQEQCVDVIAGPDSYKDLPRLLAISR 211

Query: 145 F-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             G   ++   S+++ +  +  V          TAF++I  GCD  CT+C+VP+TRG E 
Sbjct: 212 HYGNSAINVLLSLDETYADVMPVRLN---SESPTAFVSIMRGCDNMCTYCIVPFTRGRER 268

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG------------------------ 239
           SR L  +V EA+ L + GV E+TLLGQNVN++R +                         
Sbjct: 269 SRPLHSIVAEAKALAEQGVKEVTLLGQNVNSYRDRSAQEQQEALCPEEATPVPGFSTVYK 328

Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
                  F+ LL ++++    +R+R+T+ HP+D SD +++   D   +   LHLP QSG+
Sbjct: 329 PKTGGTPFAALLRAVAQAVPEMRVRFTSPHPKDFSDEVLEVIRDHPNVCKQLHLPAQSGN 388

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
            ++L  M R ++   Y +++  IR   P++ +SSDFI GF GET+++F+ T+ L+ ++ Y
Sbjct: 389 TQVLDRMRRGYSREAYLELVQHIRQFLPNVGLSSDFICGFCGETEEEFQDTVSLIQQVQY 448

Query: 360 AQAFSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI 418
             A+ F YS R  T       + V  NVK ERL  + +  RE     +    GQ   +L+
Sbjct: 449 NVAYLFAYSMREKTTAHRRYKDDVPLNVKNERLQRMVQVFREGATQLHRQMEGQEQLILV 508

Query: 419 EKHGKEKG-KLVGRSPWLQSVVLNSKNHNI------------GDIIKVRITDVKISTLYG 465
           E   K       GR+     V++ + +  I            GD + VRI +     L G
Sbjct: 509 EGKSKRSDAHWFGRNDANIKVIVPAIDVPICGDPTARRSFGAGDFLTVRIEESNSQVLKG 568

Query: 466 ELV 468
             +
Sbjct: 569 TPL 571


>gi|160880587|ref|YP_001559555.1| MiaB-like tRNA modifying enzyme YliG [Clostridium phytofermentans
           ISDg]
 gi|238065326|sp|A9KLS2|RIMO_CLOPH RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|160429253|gb|ABX42816.1| MiaB-like tRNA modifying enzyme YliG [Clostridium phytofermentans
           ISDg]
          Length = 440

 Score =  397 bits (1021), Expect = e-108,   Method: Composition-based stats.
 Identities = 136/446 (30%), Positives = 219/446 (49%), Gaps = 16/446 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + F  S GC  N+ DS  M  +   +G+E  N   +AD+IV+NTC     A E+  + + 
Sbjct: 2   KIFFISLGCDKNLVDSEVMLGLIRDRGFELTNDESEADIIVVNTCCFIHDAKEESINTIL 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +   K    K G    ++V GC+AQ   E+IL   P V+ ++G  +Y  + E++++   
Sbjct: 62  EMAEYK----KSGSLKGLIVTGCLAQRYKEDILAEIPEVDALLGTTSYDAITEVIDKVLG 117

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G+R      S +D      +     N   G  +FL I EGCDK CT+C++P  RG   S 
Sbjct: 118 GERT----ESFKDVDYLSEVKTNRVNTTGGYYSFLKIAEGCDKHCTYCIIPKIRGDYRSV 173

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            + ++V+EA+ L + GV E+ L+ Q      G  L G+K    +LL  L  I G+  +R 
Sbjct: 174 PMERLVEEAKFLSEGGVKELILIAQETT-VYGVDLYGKKM-LPELLRKLCAIDGIEWIRI 231

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
              +P +++D LI        +  YL +P+Q  SD ILK M RR    E   +I ++R  
Sbjct: 232 QYCYPEEINDELIDVLKSETKICHYLDIPIQHASDDILKRMGRRTNNEELVTLITKLRKE 291

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            PDIA+ +  I GFPGET++D     + V K+ + +   F YS    TP + M +Q+ + 
Sbjct: 292 IPDIALRTSLITGFPGETEEDHEILKEFVRKMRFERLGVFTYSKEEDTPAAKMKDQITKK 351

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVL- 440
           VK  R   L +  +       ++ VG+ ++V+IE    E G  +GR+    P +   +  
Sbjct: 352 VKVARQKELMEIQQGIAFERAESMVGRKLKVMIEGKLVEDGIFIGRTYMDAPNIDGYIFV 411

Query: 441 -NSKNHNIGDIIKVRITDVKISTLYG 465
                   G+ ++V +T+ K   L G
Sbjct: 412 HTKDELMSGEFVEVTVTEAKEYDLIG 437


>gi|57237512|ref|YP_178526.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Campylobacter jejuni
           RM1221]
 gi|81353973|sp|Q5HW09|MIAB_CAMJR RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|57166316|gb|AAW35095.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Campylobacter jejuni
           RM1221]
 gi|315057878|gb|ADT72207.1| tRNA-i(6)A37 methylthiotransferase [Campylobacter jejuni subsp.
           jejuni S3]
          Length = 433

 Score =  397 bits (1021), Expect = e-108,   Method: Composition-based stats.
 Identities = 152/446 (34%), Positives = 239/446 (53%), Gaps = 18/446 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ F+++ GC MNV DS  M       + Y     + +ADLI++NTC +REK   K++S 
Sbjct: 4   KKLFIQTLGCAMNVRDSEHMIAELTQKENYALTEDIKEADLILINTCSVREKPVHKLFSE 63

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G    +K    K      + V GC A   G EI +R+P V+ V+G +   ++ + ++  
Sbjct: 64  VGGFEKVKKEGAK------IGVCGCTASHLGNEIFKRAPYVDFVLGARNISKITQAIKTP 117

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           +F    +D D S     +          R     +++ I  GCDK CT+C+VP+TRG EI
Sbjct: 118 KFMGVDIDYDESEFAFADF---------RNSIYKSYINISIGCDKHCTYCIVPHTRGDEI 168

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVR 262
           S   + +  EA+K ++ G  EI LLGQNVN +  +  +  +K  FSDLL  LS I+ L R
Sbjct: 169 SIPFNIIYKEAQKAVEKGAKEIFLLGQNVNNYGKRFRNEHKKMDFSDLLEELSTIEDLER 228

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+T+ HP  M D  ++   +   +   +H+P+QSGS  ILK+M R +T   Y     ++
Sbjct: 229 IRFTSPHPLHMDDKFLEVFANNPKVCKSMHMPLQSGSSEILKAMKRGYTKEWYLNRALKL 288

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R + P+++IS+D IV FPGE++ DF  TMD+++K+ + Q FSFKYS R  T  + M  Q+
Sbjct: 289 RELCPNVSISTDIIVAFPGESEKDFEETMDVLEKVRFEQIFSFKYSKRPLTKAATMPNQI 348

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
           DE   + RL  LQ +  E           +  +VL E+  +    + GR+     V +  
Sbjct: 349 DEETASRRLSTLQNRHSEILDEIVKKQENKTFKVLFEEL-RAGNSIAGRTDNNFLVQVEG 407

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
               +G   +V+IT+ K   LYGE+V
Sbjct: 408 SEELLGQFKEVKITNAKRMVLYGEIV 433


>gi|329725446|gb|EGG61929.1| tRNA methylthiotransferase YqeV [Staphylococcus epidermidis VCU144]
          Length = 448

 Score =  397 bits (1021), Expect = e-108,   Method: Composition-based stats.
 Identities = 135/435 (31%), Positives = 233/435 (53%), Gaps = 15/435 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
                + GC++N Y++  +  +F    YERV    +AD+ V+NTC +     +K    + 
Sbjct: 3   TVAFHTLGCKVNHYETEAIWQLFKDANYERVEFETNADVFVINTCTVTNTGDKKSRQIIR 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R        I++  D +V V GC AQ    EI+   P V++VVG Q  ++L + +++ + 
Sbjct: 63  RA-------IRQNPDAVVCVTGCYAQTSSAEIM-EIPGVDIVVGTQDRHKLLDYIQQFQD 114

Query: 146 GKRVVDTDYSVEDKFERLSI-VDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            ++ ++   ++        + V    +R R     L IQEGC+ FCTFC++P+ RG+  S
Sbjct: 115 ERQPINGVGNIMKNRTYEELEVPYFTDRTRD---SLKIQEGCNNFCTFCIIPWARGLMRS 171

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R   +VV++A +L+++G  EI L G +     G G D +    + LL  L  I+GL R+R
Sbjct: 172 RDPEKVVEQATQLVNSGYKEIVLTGIHTG---GYGQDLKNYNLAQLLRDLDTIEGLERIR 228

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
            ++     ++D +I   G+ + ++ +LH+P+QSGSD +LK M R++T   + + + ++  
Sbjct: 229 ISSIEASQLTDEVIDVIGNSNKVVRHLHIPLQSGSDDVLKRMRRKYTMAHFSERLTKLHQ 288

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             PD+A++SD IVGFPGE++D+F+ T D +    +++   F YSPR+GTP + M  Q+DE
Sbjct: 289 ALPDLAVTSDVIVGFPGESEDEFQETYDFIVNHHFSELHVFPYSPRIGTPAARMDNQIDE 348

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
             K  R+  L     +    +      +++EV+ E+ G+E   LVG +     V     +
Sbjct: 349 ETKNVRVHKLISLSNQLAKEYASKFEDEVLEVIPEEMGEEPHTLVGYADNYMKVRFEGDD 408

Query: 445 HNIGDIIKVRITDVK 459
             IG I+KV+I    
Sbjct: 409 SLIGQIVKVKIVKAN 423


>gi|209528374|ref|ZP_03276821.1| MiaB-like tRNA modifying enzyme YliG [Arthrospira maxima CS-328]
 gi|209491190|gb|EDZ91598.1| MiaB-like tRNA modifying enzyme YliG [Arthrospira maxima CS-328]
          Length = 439

 Score =  397 bits (1021), Expect = e-108,   Method: Composition-based stats.
 Identities = 130/448 (29%), Positives = 217/448 (48%), Gaps = 19/448 (4%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
                      GC+ N  D+  M  +    GY+  ++ + AD +V+NTC   E A E+  
Sbjct: 2   ATKPTIAFSHLGCEKNRIDTEHMIGLLAEAGYQVDSNEEAADYVVVNTCSFIESAREESV 61

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           + +  +               VV+ GC+ Q   E++L   P    VVG   Y+++  ++ 
Sbjct: 62  NTIVELAEAHKK---------VVITGCMVQHFQEQLLDELPEAVAVVGTGDYHKIVNVIN 112

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           R   G RV +   S +  +     V        GV A+L I EGC+  C FC++P+ RG 
Sbjct: 113 RVEKGDRVSEI--SADPTYIADHTVPRYRTTTEGV-AYLRIAEGCNYRCAFCIIPHLRGN 169

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           + SR++  +V EA++L D GV E+ L+ Q +    G  + GE    +DL+ +L ++  + 
Sbjct: 170 QRSRTIESIVTEAKQLADQGVQELVLISQ-ITTNYGTDIYGEPK-LADLIRALGKVD-VP 226

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
            +R   ++P  ++  +I A  +    +PYL LP+Q     IL++MNR        QII+ 
Sbjct: 227 WVRMHYAYPTGLTPKVIDAIAETPNFLPYLDLPLQHSHPEILRAMNRPWQGQVNDQIIEN 286

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I++  P+  I + FIVGFPGET+  F   +  V +  +     F +SP  GTP   +   
Sbjct: 287 IKTAMPNAVIRTTFIVGFPGETNSHFEHLLKFVKRHEFDHVGVFTFSPEEGTPAYTLPNT 346

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQS 437
           V + V   R   L +  +   +  N  C+G++++VL+E+     G+ +GRS    P +  
Sbjct: 347 VSQAVMDARRDALMQVQQPISLKRNRQCIGEVVDVLVEQENPSTGEFIGRSPRFAPEVDG 406

Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYG 465
           +V    N  +G ++ V+ITD  I  LYG
Sbjct: 407 LVYVEGNARLGSLVSVKITDADIYDLYG 434


>gi|302386329|ref|YP_003822151.1| MiaB-like tRNA modifying enzyme YliG [Clostridium saccharolyticum
           WM1]
 gi|302196957|gb|ADL04528.1| MiaB-like tRNA modifying enzyme YliG [Clostridium saccharolyticum
           WM1]
          Length = 487

 Score =  397 bits (1021), Expect = e-108,   Method: Composition-based stats.
 Identities = 139/460 (30%), Positives = 225/460 (48%), Gaps = 15/460 (3%)

Query: 14  VSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIR 73
            +   +   +  +    S GC  N+ D+  M  +    GY   +   +AD+IV+NTC   
Sbjct: 31  AATTKNDRSLNMKLLCVSLGCDKNLVDTEMMLGLLNKDGYTFTDDEYEADVIVINTCCFI 90

Query: 74  EKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTY 133
             A E+  + +  +   K     +G    ++V GC+AQ   +EI+   P V+ ++G  TY
Sbjct: 91  GDAKEESINTILEMAQRKG----DGKCKALIVTGCLAQRYKQEIIDEIPEVDGILGTSTY 146

Query: 134 YRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC 193
             +  +L  A  GK  V   + ++   E   +         G  AFL I EGCDK CT+C
Sbjct: 147 DEISHVLSDALGGKEHVQRFHDLDGLPE---VETERILTTGGHYAFLKIAEGCDKHCTYC 203

Query: 194 VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS 253
           ++P  RG   S  + ++V EA +L + GV E+ L+ Q      G  L GEK     L   
Sbjct: 204 IIPSLRGNYRSVPMERLVKEAERLAEMGVKELILVAQETT-LYGLDLYGEKALPKLLKKL 262

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
              I G+  +R    +P +++D LI+   + + +  YL LP+Q  SDRILK M RR T  
Sbjct: 263 -CRISGIRWIRIQYCYPEEITDELIQTIKEEEKVCNYLDLPIQHASDRILKRMGRRTTKA 321

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
           + ++I++++R   PDIA+ +  I GFPGET +D    M+ VD++ + +   F YS    T
Sbjct: 322 QLQEIVEKLRKEIPDIALRTTLISGFPGETQEDHEELMEFVDEMEFQRLGVFVYSAEEDT 381

Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS- 432
           P +   +QV + VK ER   + +  +E    F+ + +G+ +EV+IE    ++   VGR+ 
Sbjct: 382 PAAEFPDQVLQEVKEERRDAIMELQQEISYDFSRSMIGKTLEVMIEGKVADENAYVGRTY 441

Query: 433 ---PWLQSVVL--NSKNHNIGDIIKVRITDVKISTLYGEL 467
              P +  ++     +    GD   VR+T      L GEL
Sbjct: 442 MDGPGVDGMIFVQTDEELMSGDFASVRVTGAMEYDLIGEL 481


>gi|168008611|ref|XP_001757000.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162691871|gb|EDQ78231.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 523

 Score =  397 bits (1021), Expect = e-108,   Method: Composition-based stats.
 Identities = 162/484 (33%), Positives = 251/484 (51%), Gaps = 43/484 (8%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGY-ERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + +V++YGCQMNV D   +  +    GY E V + +++D+I +NTC IRE A  K++  L
Sbjct: 31  KLYVETYGCQMNVNDMEIVLAIMKDSGYTEIVQTPEESDIIFINTCAIRENAEHKIWHRL 90

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
              ++LK+   +      V V GC+A+   E+++    +V+VV GP  Y  LP LL    
Sbjct: 91  NYFKHLKSRATRPAKPPKVAVLGCMAERLKEKLIVADKMVDVVCGPDAYRDLPRLLSLVD 150

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G+  ++T  S+E+ +  +S V      K  VTAF+++  GC+  C+FC+VP+TRG E S
Sbjct: 151 EGQTGINTLLSLEETYADVSPVRIA---KNSVTAFVSVMRGCNNMCSFCIVPFTRGRERS 207

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG-KGLDGEKC------------------ 245
           R +S +  E  +L + GV E+ LLGQNVN++     +DG                     
Sbjct: 208 RPVSSIAREVSELWEQGVKEVILLGQNVNSYNDTSEIDGGDENAKYMSTLSPGFSTIYKT 267

Query: 246 -----TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300
                +F+ LL  LS     +R R+T+ HP+D  D L+    D   +   +HLP QSGS 
Sbjct: 268 KELGLSFAHLLDVLSSQYPEMRFRFTSPHPKDFPDDLLFLMRDRPNICNMVHLPAQSGST 327

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
           R+L+ M R +T   Y   +DRIR + PD++ISSDFI GF GET++D + T+ LV ++GY 
Sbjct: 328 RVLERMRRGYTREAYLACVDRIRMIIPDVSISSDFISGFCGETEEDHQDTLKLVAEVGYD 387

Query: 361 QAFSFKYSPRLGTPGSN-MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419
            A+ F YS R  T       + V E VK  RL  +    RE  +    + +  +  VL+E
Sbjct: 388 MAYMFAYSMREKTHAHRNYEDDVPEPVKNRRLAEMITTFRETTLPRFTSQLQTMQLVLVE 447

Query: 420 KHGKE--KGKLVGRSPWLQSVVLNS------------KNHNIGDIIKVRITDVKISTLYG 465
              K   + +LVG+S     V+                +   GD ++V IT+   ++L G
Sbjct: 448 GPNKRAPETELVGKSDKGHRVIFPKVPVMDGLSAAEMVDLKPGDFVEVYITETTHASLRG 507

Query: 466 ELVV 469
           E ++
Sbjct: 508 EPLL 511


>gi|269792733|ref|YP_003317637.1| RNA modification enzyme, MiaB family [Thermanaerovibrio
           acidaminovorans DSM 6589]
 gi|269100368|gb|ACZ19355.1| RNA modification enzyme, MiaB family [Thermanaerovibrio
           acidaminovorans DSM 6589]
          Length = 433

 Score =  397 bits (1020), Expect = e-108,   Method: Composition-based stats.
 Identities = 162/444 (36%), Positives = 240/444 (54%), Gaps = 14/444 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
            F +  +GCQMNVYD+ ++       G+ +      +D+ V  TC IR+KA +KV S +G
Sbjct: 3   TFNINVFGCQMNVYDADKLRAALLGMGWTQ-GEPGGSDVEVYVTCSIRDKAEQKVLSEIG 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R         +     LV + GC+AQ  G E+ RR P V VV GP+   ++PE LER+  
Sbjct: 62  R-------HSRSKERPLVALVGCMAQRTGRELARRFPWVKVVAGPRHLGKVPEALERSMA 114

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
              V       ED  E   +    +  +  V  ++TI  GCD FC +C+VPY RG   SR
Sbjct: 115 DGEVRL--LLDEDPREVDDLCCTPHVEEGAVRGYVTIAHGCDHFCAYCIVPYVRGRFRSR 172

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
               +V+E R+L+  GV EITLLGQNVN   GK L G    F  LL  ++ ++G+ R+R+
Sbjct: 173 DPEGIVEEVRQLVARGVREITLLGQNVN-RYGKDLPGGPQ-FPGLLEMVARVEGISRVRF 230

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
            T+HP D S  L+      + + P ++LPVQSGSDR+LK M R +T  EY  ++  +R  
Sbjct: 231 ATNHPVDFSRELVDVMVRCEKVCPSINLPVQSGSDRVLKLMGRGYTRDEYLSMVALLRDN 290

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P++ I+SD IVGFPGET +DF  ++ L++++ +    +  YS R GT    M   +D +
Sbjct: 291 LPEVGITSDLIVGFPGETPEDFEKSLSLLEEVRFDLVHTAAYSVRPGTRAERMEGHLDVS 350

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLNSKN 444
            KAERL  + +      +  N + VG++  VL+E    K +G   GR+P  + V+     
Sbjct: 351 TKAERLNRVNQLQARISLEINLSKVGRVYPVLVEGPAPKGEGMWQGRTPQDKVVLFKG-P 409

Query: 445 HNIGDIIKVRITDVKISTLYGELV 468
             +G+ + VRIT      L GEL+
Sbjct: 410 SKVGEEVPVRITSALAWYLQGELI 433


>gi|125973459|ref|YP_001037369.1| MiaB-like tRNA modifying enzyme YliG [Clostridium thermocellum ATCC
           27405]
 gi|256005355|ref|ZP_05430320.1| MiaB-like tRNA modifying enzyme YliG [Clostridium thermocellum DSM
           2360]
 gi|281417660|ref|ZP_06248680.1| MiaB-like tRNA modifying enzyme YliG [Clostridium thermocellum
           JW20]
 gi|238065327|sp|A3DDZ7|RIMO_CLOTH RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|125713684|gb|ABN52176.1| SSU ribosomal protein S12P methylthiotransferase [Clostridium
           thermocellum ATCC 27405]
 gi|255990674|gb|EEU00791.1| MiaB-like tRNA modifying enzyme YliG [Clostridium thermocellum DSM
           2360]
 gi|281409062|gb|EFB39320.1| MiaB-like tRNA modifying enzyme YliG [Clostridium thermocellum
           JW20]
 gi|316940304|gb|ADU74338.1| MiaB-like tRNA modifying enzyme YliG [Clostridium thermocellum DSM
           1313]
          Length = 453

 Score =  397 bits (1020), Expect = e-108,   Method: Composition-based stats.
 Identities = 133/455 (29%), Positives = 234/455 (51%), Gaps = 16/455 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + ++  + S GC  N+ DS  M  +     +E  +  ++A++I++NTC   E A E+  +
Sbjct: 1   MKKKVGIISLGCPKNLVDSEIMLGLLKKNDFEITSDSEEANVIIVNTCGFIESAKEESIN 60

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +  + N KN   +      ++VAGC+AQ   +EI++  P V+ VVG   Y  + +++E 
Sbjct: 61  TILEMANYKNKNCEM-----LIVAGCLAQRYKDEIIKEMPEVDAVVGVSGYDEIAKVIEE 115

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNR---KRGVTAFLTIQEGCDKFCTFCVVPYTR 199
               K   +         + LS+      R        A+L I EGCD  CT+C +PY R
Sbjct: 116 FYSKKNDKNDKEKAVFHKDTLSVEYLNNERLLSTNSGYAYLKISEGCDNRCTYCAIPYIR 175

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G   SR +  ++ EA  L   GV E+ L+ Q+V    GK L G+K    +L+  +S I+G
Sbjct: 176 GPYRSRKMEDIISEAEFLAGKGVKEVILVAQDVT-VYGKDLYGQKK-LVELVREVSGIEG 233

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           +  +R   ++P ++ + LIK   + + ++ YL +P+Q  SD+ILK M RR T+   R I+
Sbjct: 234 IEWIRLLYTYPEEIDEELIKEIANNEKVVKYLDIPIQHASDKILKLMGRRSTSEGIRNIL 293

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
           DR+R+  PDI + +  IVGFPGE + DF+   D V K  + +   F YS   GTP  ++ 
Sbjct: 294 DRLRAEVPDIVLRTSLIVGFPGEDEKDFKILYDFVRKYEFDRLGVFTYSREEGTPAYDLK 353

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWL 435
            Q+ ++VK  R   + +  +E     N++ + ++ + L+E   ++     GR+    P +
Sbjct: 354 PQIKKSVKESRRNDIMQLQKEIVQRKNESRLEKVYKTLVEGVSEDGIFYYGRTYAEAPDI 413

Query: 436 QS-VVL-NSKNHNIGDIIKVRITDVKISTLYGELV 468
              V   +++    G+ + V++ ++    L GE++
Sbjct: 414 DGSVYFTSAEPLKFGEFVNVKVLNIDDYDLIGEVI 448


>gi|194334797|ref|YP_002016657.1| (dimethylallyl)adenosine tRNA methylthiotransferase
           [Prosthecochloris aestuarii DSM 271]
 gi|229890596|sp|B4S564|MIAB_PROA2 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|194312615|gb|ACF47010.1| RNA modification enzyme, MiaB family [Prosthecochloris aestuarii
           DSM 271]
          Length = 441

 Score =  397 bits (1020), Expect = e-108,   Method: Composition-based stats.
 Identities = 156/446 (34%), Positives = 248/446 (55%), Gaps = 14/446 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + ++  ++++GCQMN  D+  +  +  ++GY  V   DDADL++LNTC +RE A EK+  
Sbjct: 1   MTKKVSIRTFGCQMNQADTEIISSLLTAEGYCLVAEEDDADLVMLNTCAVRENAVEKIMH 60

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            L  ++ L+  R      ++    GCV Q   EE+ ++S +++ + GP +Y +LP L+  
Sbjct: 61  HLDSLKGLRRRRRGLVVGVI----GCVPQYYREEMFQKSGVIDFIAGPDSYRKLPGLIRN 116

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           A  G R  +   +  + +  +  +     R   ++AF+ +  GC+  C FCVVP+TRG E
Sbjct: 117 AFQGIRGAELFLTQSETYGDIEPM-----RSGSISAFIPVMRGCNNMCAFCVVPFTRGRE 171

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SRSL  V+DE R+L   G  E+TLLGQNVN++R    D     F+ LL  +S+  G +R
Sbjct: 172 RSRSLQSVLDEVRRLEGQGYRELTLLGQNVNSYRD---DEAGADFALLLDEVSKAAGEMR 228

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+TTSHP+D+S+ L+      + +   +HLPVQSGS R+L+ M+R HT  EY   I  I
Sbjct: 229 VRFTTSHPKDISEDLVNVVAQRENVCNAIHLPVQSGSSRMLEVMHRGHTRREYLDKIAMI 288

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN-MLEQ 381
           RS  P +A+S+D I GF GET++D   T+ L++++ +  A+ F YS R GT  +  + + 
Sbjct: 289 RSAVPGVALSTDLIAGFCGETEEDHLQTLSLMEEVRFDYAYMFYYSVRPGTYAARHLTDD 348

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRSPWLQSVVL 440
           V    K  RL  +               VG + EVL E   +     L+GRS   + VV 
Sbjct: 349 VALEEKKRRLQEIIDLQSGISGEIFGNDVGSVQEVLAESESRRSSDMLMGRSDTNRVVVF 408

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGE 466
           + +++  GD+++V I     +TL G 
Sbjct: 409 DRQHYQPGDLVRVVIESSTQATLIGR 434


>gi|222054021|ref|YP_002536383.1| MiaB-like tRNA modifying enzyme YliG [Geobacter sp. FRC-32]
 gi|221563310|gb|ACM19282.1| MiaB-like tRNA modifying enzyme YliG [Geobacter sp. FRC-32]
          Length = 451

 Score =  397 bits (1020), Expect = e-108,   Method: Composition-based stats.
 Identities = 148/455 (32%), Positives = 239/455 (52%), Gaps = 23/455 (5%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
            ++  + S GC  N+ D+  M        YE      +AD+I++NTC   ++A ++    
Sbjct: 6   KEKVSLVSLGCPKNLVDAEVMLGYLSKDSYEVTTDEHEADIIIVNTCSFIKEAKQESIDT 65

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +  + + K     +    +++V GC+ Q   EE+++  P V++ VG   Y R+ E++   
Sbjct: 66  ILDLADRK----HDARCKMLIVTGCLPQRYQEELVKELPEVDIFVGTGDYPRIAEIIAEK 121

Query: 144 RFGKRVV----DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           R     +    D ++  +D+  RL             TA+L I EGC   C++CV+P  R
Sbjct: 122 RGLSEQLCYTGDPNFLYDDELPRLQSSPY-------YTAYLKIAEGCSNCCSYCVIPSLR 174

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G   SR + +++ EA+ L+  GV EI L+ Q++    GK L+ E  T   L+ SL +++G
Sbjct: 175 GSFRSRPMDKLLREAKGLVAKGVREINLIAQDITG-YGKDLN-EGATLEALIRSLVKLEG 232

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           L  +R   ++P  +SD LIK   + D +  YL +P+Q  SD ILK MNRR +  E R++I
Sbjct: 233 LQWIRLLYAYPDGISDSLIKLIKEEDKVCKYLDIPLQHISDPILKQMNRRSSEAEIRELI 292

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            ++R+  P IAI + FIVGFPGETDDDF+  +  V++  + +   F YS   GTP   M 
Sbjct: 293 AKLRTEVPGIAIRTSFIVGFPGETDDDFKKLVQFVEETRFDRMGVFCYSREEGTPAFEMA 352

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-----KGKLVGRSPW 434
           EQV E +K ER   L +         N + V +   VLIE + +E     KG+   ++P 
Sbjct: 353 EQVSERIKRERYKKLMRTQARVSFKHNRSLVDKEEMVLIEGYSEETELLLKGRSSRQAPD 412

Query: 435 LQS-VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           +   V + + N  +G+I+++RITD     L GE+V
Sbjct: 413 IDGQVYITAGNAQVGEIVRLRITDSSDYDLIGEIV 447


>gi|224014702|ref|XP_002297013.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220968393|gb|EED86741.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 432

 Score =  397 bits (1020), Expect = e-108,   Method: Composition-based stats.
 Identities = 170/438 (38%), Positives = 254/438 (57%), Gaps = 14/438 (3%)

Query: 33  GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92
           GCQMN+ DS R+E    S G   +   +  D+IVLNTC IR+ A +KVYS+LG       
Sbjct: 2   GCQMNLADSERIEGQLMSLGIRPLGEDEKPDVIVLNTCSIRDHAEQKVYSYLG----PHA 57

Query: 93  SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDT 152
            R + G D+ ++VAGCVAQ EG+ +LRR P +++V+GPQ   R+ +LLE    G +VV T
Sbjct: 58  KRKRAGEDITIIVAGCVAQQEGQSLLRRIPEIDLVMGPQYANRISDLLEDVANGNQVVAT 117

Query: 153 DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVD 212
           + S   +            R   V A++ +  GC++ CT+C+VP TRG+E SR +  +VD
Sbjct: 118 EASHIMEDSTKP------RRGSDVCAWVNVIYGCNERCTYCIVPTTRGVEQSRPVESIVD 171

Query: 213 EARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
           E +KL+++G  E+TLLGQN++A+    L   K  FSDLL  +  + GL RLR+ TSHPR 
Sbjct: 172 EVKKLVESGYKEVTLLGQNIDAYGRDMLP--KRKFSDLLRIVGGVDGLERLRFVTSHPRY 229

Query: 273 MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAIS 332
           MS  ++ A  +      Y H+P QSGS+ ILK+M R HT  ++  I+DRIR   PD AI+
Sbjct: 230 MSLGVVDAVAETPTACEYFHVPFQSGSNDILKAMGRGHTREKFLGIVDRIRQRLPDAAIT 289

Query: 333 SDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLL 392
           +D IVGFPGET+ DF+ T+DL++ + +    +  YSPR  TP S    Q+ E VK +RL 
Sbjct: 290 ADVIVGFPGETEQDFQDTLDLMETVVFDNVNTAAYSPRPNTPASTWENQLSEEVKQDRLQ 349

Query: 393 CLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLNSKNHNI-GDI 450
            + +             +G+++EVL+E+   K   +++GR+     V        + G +
Sbjct: 350 RINELNLRHASERRARMMGRVVEVLVEERNVKVPTQVMGRTRHGYIVYCEGDIGQLRGKL 409

Query: 451 IKVRITDVKISTLYGELV 468
           + V++   +   L G +V
Sbjct: 410 VNVKVEKCQRYYLAGSIV 427


>gi|182412618|ref|YP_001817684.1| RNA modification protein [Opitutus terrae PB90-1]
 gi|177839832|gb|ACB74084.1| RNA modification enzyme, MiaB family [Opitutus terrae PB90-1]
          Length = 468

 Score =  397 bits (1019), Expect = e-108,   Method: Composition-based stats.
 Identities = 163/462 (35%), Positives = 252/462 (54%), Gaps = 32/462 (6%)

Query: 36  MNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRI 95
           MN  DS  +  M  ++GY  V   +D D+++LNTC +R+ A +K     G ++  K  + 
Sbjct: 1   MNERDSEAVAAMLRARGYRIVADENDCDILLLNTCSVRDAAEQKAIGKAGYLQQRKKKQ- 59

Query: 96  KEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF--------GK 147
               D ++ + GC+AQ  G  +L + P V+++VG Q ++++P  L+  R         G+
Sbjct: 60  ---PDFVLGILGCMAQNRGASLLDQLPDVDLIVGTQKFHQVPGYLDNLRAARDAGVPIGE 116

Query: 148 RVVDTDY---SVEDKFERLSIVDGGYNRKRG---------------VTAFLTIQEGCDKF 189
            +VD      S     + L   D   + +                 +TAF++IQ+GC+  
Sbjct: 117 TIVDIGEEAGSQNTIKDHLLPQDSDSDSQPSTLNSQLRGAAAPPPQITAFVSIQQGCNMD 176

Query: 190 CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW--RGKGLDGEKCTF 247
           C FC+VP TRG E SR +  +V E  +L   GV E+TLLGQ V ++  R          F
Sbjct: 177 CAFCIVPKTRGDERSRPMDDIVRECEQLAARGVREVTLLGQIVTSYGRRDYTHTNGISPF 236

Query: 248 SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307
             LL  +  + G+ R+R+T+ HPR   D L+ A+G L  L  Y+HLP+QSGS+RIL++MN
Sbjct: 237 VQLLERVHALDGIERIRFTSPHPRGFKDDLVAAYGRLPKLCGYVHLPLQSGSNRILRAMN 296

Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           R +T   YR+I+D +R+VR D+  S+D IVGFPGETD+DF  T +L +   Y  A+ FKY
Sbjct: 297 RPYTRERYREIVDALRAVRSDMYFSTDVIVGFPGETDEDFEQTRELFEACNYDMAYVFKY 356

Query: 368 SPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK 427
           S R GTP +   +QV E+VK +R   L + LR+     N   +  + EVL+E   K   +
Sbjct: 357 SVRTGTPAAERGDQVPEDVKEQRNQLLLELLRQNSERRNALLLDTVEEVLVEGPDKTGQR 416

Query: 428 LVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
             GR+   +  +  +    +G ++ +RIT   +STLYGEL++
Sbjct: 417 FTGRTRGNRVCIFEATPDLVGRLVSLRITRASVSTLYGELML 458


>gi|282856153|ref|ZP_06265436.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Pyramidobacter piscolens
           W5455]
 gi|282585912|gb|EFB91197.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Pyramidobacter piscolens
           W5455]
          Length = 435

 Score =  397 bits (1019), Expect = e-108,   Method: Composition-based stats.
 Identities = 163/442 (36%), Positives = 247/442 (55%), Gaps = 12/442 (2%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQG-YERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           F +K YGCQMN YD+ ++     ++G YE     + AD I+   C IR+KA  KV+S LG
Sbjct: 4   FAMKVYGCQMNQYDADKIRTALVARGAYETAE--EGADAIIFIGCSIRDKAEHKVWSELG 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                     +     +V + GC+AQ  G ++ RR P + VV GP+    +P+ LE A  
Sbjct: 62  HYEERWRKERRP----VVAMTGCIAQNVGVDMSRRYPWIRVVSGPRHIGLVPDALETAMS 117

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G   +      +D  E   +      R+    A + I  GCD FCT+C+VPY RG   SR
Sbjct: 118 GDEKI--VLLDDDPRELHELRFAPLERQFPWKASVMISHGCDNFCTYCIVPYVRGRFASR 175

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           S  +++ EA +L++ GV EI LLGQNV+   GK LD  + +F+DLL  ++ IKGL RLR+
Sbjct: 176 SPREIMSEAEQLVEGGVKEICLLGQNVDT-YGKDLD--RYSFADLLNDVAHIKGLERLRF 232

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
            TS+P D +  ++ A      + P ++LP+Q+GSDRILK+MNRR+T  EY +++D IR  
Sbjct: 233 MTSYPTDFTKDVVDAIAGNANICPAINLPIQAGSDRILKAMNRRYTVEEYAKVVDCIRCG 292

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P++ ++SD IVGFP ET+DDF  +M+ +++  + Q  +  YS R GTP + M +QV E+
Sbjct: 293 LPEVGLTSDLIVGFPSETEDDFACSMEALERFRFDQVHTAAYSRRQGTPAAAMKDQVPES 352

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445
           VK  RL  + +   E     N   VG+   VL++    +   L GR+P  + ++      
Sbjct: 353 VKNRRLNDVNRLQTEIAKDINKKLVGRRYRVLVDGRALKGNLLQGRNPADKVILFEGGES 412

Query: 446 NIGDIIKVRITDVKISTLYGEL 467
            IG  + V +T     +L G++
Sbjct: 413 VIGTFVDVEVTAADSWSLKGKI 434


>gi|220905819|ref|YP_002481130.1| MiaB-like tRNA modifying enzyme YliG [Cyanothece sp. PCC 7425]
 gi|219862430|gb|ACL42769.1| MiaB-like tRNA modifying enzyme YliG [Cyanothece sp. PCC 7425]
          Length = 450

 Score =  396 bits (1018), Expect = e-108,   Method: Composition-based stats.
 Identities = 129/448 (28%), Positives = 216/448 (48%), Gaps = 19/448 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
              +   GC+ N  DS  M  +    GY   N    AD +++NTC   + A E+    L 
Sbjct: 6   TIAIAHLGCEKNRIDSEHMLGLLVQAGYSVDNDEALADYVIVNTCSFIQAAREESVRTLV 65

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +               +++ GC+AQ   E++L   P    +VG   Y+++ E++E+   
Sbjct: 66  ELAEADKK---------IIITGCMAQHFQEQLLEELPEAVALVGTGDYHKIVEVVEQVEA 116

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G+RV     S E  +     V        GV A+L + EGCD  C FC++P+ RG + SR
Sbjct: 117 GQRVKQI--SAEPTYIADETVPRYRTTTEGV-AYLRVAEGCDYRCAFCIIPHLRGNQRSR 173

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           S+  +V EA +L   GV EI L+ Q +    G  L G K   ++LL +L ++  +  +R 
Sbjct: 174 SIESIVAEAEQLAAEGVQEIILISQ-ITTNYGLDLYG-KPKLAELLRALGKVD-VPWIRM 230

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
             ++P  ++  +I A  +   ++PYL LP+Q     +L++MNR        +I+++I++ 
Sbjct: 231 HYAYPTGLTPDVIAAIKETPNVLPYLDLPLQHSHPDVLRAMNRPWQGQVNDRIMEQIKTA 290

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P+  + + FIVGFPGET+  F+   + V +  +     F +SP  GTP  ++  Q+ + 
Sbjct: 291 LPEAVLRTTFIVGFPGETEAHFQHLCEFVQRHQFDHVGVFTFSPEEGTPAFDLPNQLSQE 350

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVVLN 441
           V  ER   L    +      N   +G+++ VLIE+   E G+L+GR    SP +  +V  
Sbjct: 351 VMEERREILMALQQPISYQKNQQEIGRVVNVLIEQENPETGELIGRSARFSPEVDGLVYV 410

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELVV 469
                +G +  V+IT      LYG +  
Sbjct: 411 QGEARLGAMTLVKITAADPYDLYGHVAT 438


>gi|195499798|ref|XP_002097099.1| GE24685 [Drosophila yakuba]
 gi|194183200|gb|EDW96811.1| GE24685 [Drosophila yakuba]
          Length = 583

 Score =  396 bits (1018), Expect = e-108,   Method: Composition-based stats.
 Identities = 147/480 (30%), Positives = 245/480 (51%), Gaps = 39/480 (8%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++   + YGCQMN  D+  +  +    GY R    ++AD+I+L TC +R+ A +++++ L
Sbjct: 92  RKVHFEVYGCQMNTNDTEVVFSILQENGYLRCQEPEEADVIMLVTCAVRDGAEQRIWNRL 151

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             +R +K+ R      L + + GC+A+   E++L +   V+V+ GP +Y  LP LL  +R
Sbjct: 152 KHLRAMKSKRSTRRHPLQLTLLGCMAERLKEKLLEQEQCVDVIAGPDSYKDLPRLLAISR 211

Query: 145 F-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             G   ++   S+++ +  +  V          TAF++I  GCD  CT+C+VP+TRG E 
Sbjct: 212 HYGNSAINVLLSLDETYADVMPVRLN---SESPTAFVSIMRGCDNMCTYCIVPFTRGRER 268

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG---------------------LDG 242
           SR L  +V E + L + GV E+TLLGQNVN++R +                         
Sbjct: 269 SRPLESIVAEVKALAEQGVKEVTLLGQNVNSYRDRSGLEAQESLKATPVPGFSTVYKPKT 328

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
               F+ LL S+++    +R+R+T+ HP+D SD +++   D   +   LHLP QSG+ ++
Sbjct: 329 GGTPFAALLRSVAQAVPEMRIRFTSPHPKDFSDEVLEVIRDHPNVCKQLHLPAQSGNTQV 388

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           L+ M R ++   Y ++++ IR   P++ +SSDFI GF GET+ +F+ T+ L+ ++ Y  A
Sbjct: 389 LERMRRGYSREAYLELVEHIRQFLPNVGLSSDFICGFCGETEAEFQDTVSLIQQVKYNVA 448

Query: 363 FSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKH 421
           + F YS R  T       + V  NVK +RL  + +  RE     +    GQ   +L+E  
Sbjct: 449 YLFAYSMREKTTAHRRYKDNVPLNVKNKRLQRMVQVFREGATQLHRKMEGQEQLILVEGK 508

Query: 422 GKEKG-KLVGRSPWLQSVVLNSKNHNI------------GDIIKVRITDVKISTLYGELV 468
            K       GR+     V++ S +  I            GD + VRI +     L G  +
Sbjct: 509 SKRSDAHWFGRNDANIKVIVPSIDVAISRDPTAKRSFGVGDFLAVRIEESNSQVLKGTPL 568


>gi|326389860|ref|ZP_08211424.1| MiaB-like tRNA modifying enzyme [Thermoanaerobacter ethanolicus JW
           200]
 gi|325994128|gb|EGD52556.1| MiaB-like tRNA modifying enzyme [Thermoanaerobacter ethanolicus JW
           200]
          Length = 455

 Score =  396 bits (1017), Expect = e-108,   Method: Composition-based stats.
 Identities = 134/446 (30%), Positives = 237/446 (53%), Gaps = 15/446 (3%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
            +     + GC++N Y++  M ++F   GYE V+  + AD+ V+NTC +  ++  K    
Sbjct: 20  KKTVAFYTLGCKVNQYETEVMAELFKKAGYEVVDFNEKADVYVINTCTVTNRSDMKSRQE 79

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           + + R       K+  D LVV AGC  Q   EE     P V++ +G +   ++ EL+E  
Sbjct: 80  IRKAR-------KKNPDALVVAAGCYVQVSPEE-AFSLPEVDIAIGTKNKDKIVELVEEF 131

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
               + +    ++  + E        Y       A++ IQ+GC+++CT+C++PY RG   
Sbjct: 132 TQKNQKLSVVNNIMTQKEYEEFGVTAY--TERTRAYIKIQDGCNQYCTYCIIPYARGPVR 189

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR   +V+DE ++  D+G  EI L G ++ ++   G D +     D++  + EI G+ R+
Sbjct: 190 SRDPKKVLDEVKRFADSGYKEIVLTGIHIASY---GKDLKNIGLLDIIKMIHEIDGIKRI 246

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R ++  P  +++  +K   +L  +  + H+ +QSG D  LK M RR+T  EY+ +IDR+R
Sbjct: 247 RLSSIEPTFLTEEFVKEIANLPKMCRHYHVSLQSGCDETLKRMGRRYTTKEYKSVIDRLR 306

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
               D+AI++D +VGFPGET+++F  T   V++I +++   FKYS R GT   N   QV 
Sbjct: 307 EYIKDVAITTDVMVGFPGETEEEFLKTYKFVEEICFSKMHVFKYSRRKGTRAYNFPNQVA 366

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRSPWLQSVVLNS 442
            ++K +R   L +     +  F ++ +G+ +EVL E+  K  +G + G +    SV +  
Sbjct: 367 NHIKEDRSKKLIELSNRCEYKFMESFIGKTLEVLFEQPVKNMEGYVEGLTDNYLSVAVKG 426

Query: 443 KNHNI-GDIIKVRITDVKISTLYGEL 467
               +  +I  V+I ++K + L GE+
Sbjct: 427 DRKLLRNEIFPVKIKEIKDNLLIGEI 452


>gi|164688504|ref|ZP_02212532.1| hypothetical protein CLOBAR_02149 [Clostridium bartlettii DSM
           16795]
 gi|164602917|gb|EDQ96382.1| hypothetical protein CLOBAR_02149 [Clostridium bartlettii DSM
           16795]
          Length = 445

 Score =  396 bits (1017), Expect = e-108,   Method: Composition-based stats.
 Identities = 129/448 (28%), Positives = 218/448 (48%), Gaps = 17/448 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +  ++S GC  N+ D+  M  +   +GY+   + ++AD+I++NTC   E A ++    + 
Sbjct: 3   KIALESLGCSKNLVDAEIMMGILNEKGYKLTGNFEEADVILVNTCGFIESAKQESIQTIL 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
               LK          L++V GC+AQ   +E+    P ++ +VG  +Y  + E+L     
Sbjct: 63  EFAELKE----TANLKLLIVTGCLAQRYADELKEEIPEIDAIVGTGSYQNIDEILAELSE 118

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
             ++V  +       E L      Y       A+L I EGCD  CT+C++P  RG   SR
Sbjct: 119 KHQIVSLNNIEFAYDENLP----RYVSTPSHMAYLKIGEGCDNKCTYCIIPKLRGKYRSR 174

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            +  ++ EA+KL + GV E+ ++ Q+     G  L GE+   ++LL  L++I+G   +R 
Sbjct: 175 KMEDIIAEAKKLAERGVKELVVIAQDTT-KYGLDLYGEEK-LANLLEELAQIEGFKWIRV 232

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
             S+P  +++ L+K     D +  Y  +P+Q  S+R+LK MNR+ T  +    I+ IRS 
Sbjct: 233 MYSYPESITEELVKVIKKYDNICNYFDMPIQHASNRVLKLMNRKTTKEDILSKINMIRSH 292

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
             D  + +  IVGFPGET++DF    + + +  + +   F YS    TP   +   ++E 
Sbjct: 293 ISDATLRTSIIVGFPGETEEDFNELAEFIKEAQFDKLGVFTYSREEDTPADKLPNHLEEE 352

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVLN 441
           VK ER   L    +      N+  +G   EVL+E+   E    VGR+      + ++V  
Sbjct: 353 VKVERQEALMMIQQGISEEKNNNKIGNKYEVLVEEQ-IEDNVYVGRTIYDAEEIDAIVYV 411

Query: 442 SK--NHNIGDIIKVRITDVKISTLYGEL 467
               N  +G+ + V ITD     L G +
Sbjct: 412 KSIRNLQVGEFVNVVITDALEYDLMGVI 439


>gi|258516263|ref|YP_003192485.1| MiaB-like tRNA modifying enzyme YliG [Desulfotomaculum acetoxidans
           DSM 771]
 gi|257779968|gb|ACV63862.1| MiaB-like tRNA modifying enzyme YliG [Desulfotomaculum acetoxidans
           DSM 771]
          Length = 446

 Score =  396 bits (1017), Expect = e-108,   Method: Composition-based stats.
 Identities = 135/455 (29%), Positives = 218/455 (47%), Gaps = 21/455 (4%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           +  +  + S GC  N+ D+  M       GY   N   DA+++V+NTC    +A E+  +
Sbjct: 1   MTLKVGIVSLGCAKNLVDTEIMLGFLKRAGYSITNREKDAEVLVVNTCGFITEAKEEAIN 60

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +  +   K      G    ++VAGC+AQ    E+L+  P ++ ++G  +  ++  ++ER
Sbjct: 61  TILEMAQFKLG----GKCRALLVAGCLAQRYAPELLKEMPEIDGILGIGSIGQIVSVIER 116

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
              G+RV +         E   I+          TA+L I EGCD  C++C +P  RG  
Sbjct: 117 VLAGERVREVGAPEYVFAETARIL-----ATPPYTAYLKIAEGCDNKCSYCAIPGIRGSF 171

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR +  +  EA  L   GV E  L+ Q+     G  L G K + S+L+  L+ I  +  
Sbjct: 172 LSRKIDSIKKEAAALAAQGVREAVLIAQDTT-KYGFDLYG-KFSLSNLIKELTLINDIEW 229

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R    +P   +  LI        +  YL +P+Q  SD IL SMNR  TA + R++I+++
Sbjct: 230 IRLLYCYPSKFTPELIDVLASEKKVCRYLDIPLQHASDSILLSMNRSGTAEQNRRLIEKL 289

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R     IA+ + FIVGFPGET+ DF+  +D + +I + +   F YSP   TP + +  Q+
Sbjct: 290 RQAVSGIALRTSFIVGFPGETEADFQTLLDYMQEIRFDRVGIFVYSPEEDTPAAALDNQI 349

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK----LVGRS----PW 434
            E++K +R        ++  +  N   VG ++ VLIE   + K +      GRS    P 
Sbjct: 350 AEDIKQDRYERAMLLQQKISLENNRRKVGSVVSVLIEGIARNKEEGNFTYTGRSEFDAPG 409

Query: 435 LQSVVLNSKNHNI--GDIIKVRITDVKISTLYGEL 467
           +   VL      +  G+I+ V I       L GEL
Sbjct: 410 IDGKVLVETQEKLSAGEIVPVLIKKAYEYDLIGEL 444


>gi|156743179|ref|YP_001433308.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Roseiflexus
           castenholzii DSM 13941]
 gi|156234507|gb|ABU59290.1| RNA modification enzyme, MiaB family [Roseiflexus castenholzii DSM
           13941]
          Length = 480

 Score =  396 bits (1017), Expect = e-108,   Method: Composition-based stats.
 Identities = 157/459 (34%), Positives = 241/459 (52%), Gaps = 27/459 (5%)

Query: 14  VSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIR 73
             Q  D     +R++V + GCQMNV DS R+E      GY      +DA  IVLN+C +R
Sbjct: 15  ADQSRDATPRERRYYVWTVGCQMNVSDSERLEAALQGVGYAPAERPEDASFIVLNSCSVR 74

Query: 74  EKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILR-RSPIVNVVVGPQT 132
             A E++   L  ++ +K    +   D  +V+ GC+     + I + R P+V+  V P  
Sbjct: 75  ASAEERILGKLSEVQRIK----RNHPDTKIVLWGCMVGPGNQSIFQSRLPMVDHFVSPSA 130

Query: 133 YYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTF 192
              +  L           +  Y +++    L +    +     V+  + IQ GC+  C+F
Sbjct: 131 VDEVLAL---------APNPIYQLDE--PALPVARWDHP---PVSVHVPIQYGCNMSCSF 176

Query: 193 CVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLY 252
           CV+P  RG E SR L+++V+E R+++  G  EITLLGQ V++W G  L G +   +DLL 
Sbjct: 177 CVIPLRRGRERSRPLAEIVEECRRIVARGAKEITLLGQIVDSW-GHDLPG-RPDLADLLR 234

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
           ++ EI GL+RLR+ TSHP  M+D LI A  +L   MP ++LPVQ+G D +LK M R +T 
Sbjct: 235 AVHEIPGLLRLRFLTSHPAWMTDRLIAAVAELPRCMPDINLPVQAGDDALLKIMRRGYTV 294

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
             YR++I +IR   P +++++D IVG PGET + F  T  L+D+I + +     +SPR G
Sbjct: 295 QRYRELIAKIRDAIPHVSLTTDVIVGHPGETRERFEGTKRLLDEIRFDKVHIAAFSPRPG 354

Query: 373 TPGSNMLEQ----VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL 428
           T  + M       V E  K  R + L++   +     N   + Q +EVL+E  G+ KGK 
Sbjct: 355 TRAAEMELDPALAVPEGEKQLRRIELERIQEQIATERNARFLNQTVEVLVE--GEHKGKW 412

Query: 429 VGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
            GR+P  + V  +      G ++ VRI      +L G L
Sbjct: 413 RGRTPGNKLVFFSDPRDRTGQLVNVRIIHTGPWSLQGVL 451


>gi|317486846|ref|ZP_07945659.1| MiaB family RNA modification enzyme [Bilophila wadsworthia 3_1_6]
 gi|316921901|gb|EFV43174.1| MiaB family RNA modification enzyme [Bilophila wadsworthia 3_1_6]
          Length = 453

 Score =  396 bits (1017), Expect = e-108,   Method: Composition-based stats.
 Identities = 171/453 (37%), Positives = 251/453 (55%), Gaps = 17/453 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
            F + ++GCQMNV DS  +      +G+     ++ A++++LNTC +R+K  +KVY+ LG
Sbjct: 5   TFHIITFGCQMNVNDSFWLARSLQRRGFVESP-LEKAEVVILNTCSVRDKPEQKVYAALG 63

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           RI+       +       VVAGCVAQ  G     R P V +VVG       P+ +ER   
Sbjct: 64  RIKY----ETRRVPGSFAVVAGCVAQQIGAGFFERFPQVRLVVGGDGLAMAPDAIERLHG 119

Query: 146 GK--RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
               R+  TD+S E   ER   +      +    AF+ I +GCD FCT+C+VP+TRG + 
Sbjct: 120 DPSLRLNLTDFS-EIYPERDPALPAQGEGEIPPVAFVNIMQGCDNFCTYCIVPFTRGRQK 178

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR    ++DE R LIDNG  EITLLGQNVN++          +F+ LL  +SE+ GL RL
Sbjct: 179 SRDAGAILDECRALIDNGAKEITLLGQNVNSYGLDKHASGDTSFARLLRKVSELPGLARL 238

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+ T HP+D+S  +I   G++  L P LHLP+Q+GSDR+L  MNR++    Y  +++ +R
Sbjct: 239 RFVTPHPKDLSPEVIAMFGEVPNLCPRLHLPLQAGSDRVLARMNRKYDMARYMTLVEGLR 298

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           + RPDIA+S+D IVGFPGET++ F+ T+D V  + +  +FSF YS R GT  S   ++V+
Sbjct: 299 AARPDIALSTDLIVGFPGETEEQFQETLDAVRAVNFMSSFSFCYSDRPGTAASRHTDKVE 358

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-------KLVGRSPWLQ 436
              K  RL  LQ    +    +  A VG   ++L+E   +++           GR PW  
Sbjct: 359 PAEKLRRLERLQALQEDLSSDWLKARVGCKTDILLEGASRKQDGEDAATESWQGRDPWGD 418

Query: 437 SVVL--NSKNHNIGDIIKVRITDVKISTLYGEL 467
           +V +   +     G I+ V I   K  +L GEL
Sbjct: 419 AVNVSLPAGIGKAGLIVPVTIVTAKKHSLIGEL 451


>gi|210623865|ref|ZP_03294100.1| hypothetical protein CLOHIR_02051 [Clostridium hiranonis DSM 13275]
 gi|210153291|gb|EEA84297.1| hypothetical protein CLOHIR_02051 [Clostridium hiranonis DSM 13275]
          Length = 432

 Score =  395 bits (1016), Expect = e-108,   Method: Composition-based stats.
 Identities = 149/445 (33%), Positives = 241/445 (54%), Gaps = 15/445 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++    + GC++N Y++  M ++F   GYE V S + AD+ V+NTC +   +  K   ++
Sbjct: 2   KKVAFYTLGCKVNQYETEAMIELFEHAGYEHVQSEEYADVYVINTCTVTHMSDRKSRQYI 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R++       K+  + ++ V GC +Q   EEIL     VN+V+G      + E +E   
Sbjct: 62  RRVK-------KKNPNSVIAVVGCYSQVAPEEILD-IEEVNLVMGTNDRRHIVEKVEAVT 113

Query: 145 FGKRVVDTDYSVEDK-FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
              +V   D  ++ K FE + I       +    AF+ IQ+GCD+FCT+C++PY RG   
Sbjct: 114 CNDKVSTVDDIMKVKEFEEIEITQTNGRTR----AFMKIQDGCDRFCTYCIIPYARGRVR 169

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR L  +V+E + L   G  E+ L G +V A  GK +  ++    D++ +++EI G+ R+
Sbjct: 170 SRDLDNIVEEVKLLASKGYKEVVLTGIHV-ASYGKDIKDKEVKLLDVIKAVNEIDGIERI 228

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R ++  P   +D  ++    ++ + P+ HL +QSG D  L  MNRR+T  EY++I+DR+R
Sbjct: 229 RTSSVEPILFTDEFVEEISKMNKVCPHFHLSLQSGCDATLDRMNRRYTTKEYKEIVDRLR 288

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              PD+AI++D IVGFPGET+++F+ T + +  I  AQ   FKYSPR GTP + M  Q+D
Sbjct: 289 EKMPDVAITTDVIVGFPGETNEEFKQTYEFLKDIELAQMHIFKYSPRKGTPAAKMDNQID 348

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
             VK  R   L    +     F +  +G+ ++VL E+  K  G   G +     V   S+
Sbjct: 349 PQVKHMRSEQLISLSKNNFDKFAERFIGREMDVLFEETTK-SGNYEGLTMNYMRVEAPSE 407

Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468
               G I KV+IT +K   + G L+
Sbjct: 408 EDISGQIRKVKITGIKEDYVEGVLI 432


>gi|312622481|ref|YP_004024094.1| RNA modification enzyme, miab family [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312202948|gb|ADQ46275.1| RNA modification enzyme, MiaB family [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 434

 Score =  395 bits (1016), Expect = e-108,   Method: Composition-based stats.
 Identities = 145/447 (32%), Positives = 244/447 (54%), Gaps = 19/447 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    + GC++N Y++  + ++F   G+E V+    AD+ V+NTC +   +  K    + 
Sbjct: 2   KIAFYTLGCKVNQYETQAVAELFKESGFEIVDFDSKADVYVINTCTVTNISDRKSRHAIK 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           + + L           +VVV GC  Q   +E+  +   V++++G +   ++ + + +   
Sbjct: 62  KAKKL-------SPQSIVVVMGCYPQVYPQEV-EKIEDVDIIIGTKDRQKIVDYVRQYLE 113

Query: 146 GKR---VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            K+    ++ DY  E  FE L I +     +    AF+ I+EGCD+FC++C++PY RG  
Sbjct: 114 DKKKIVAINEDYKRE-AFEELKISEFNERSR----AFIKIEEGCDQFCSYCIIPYARGAV 168

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SRSL  + +E  +L+  G  E  + G N+++  GK LDG K T  D++  +++I+G+ R
Sbjct: 169 RSRSLKSIEEEVIRLVQKGYKEFVITGINISS-YGKDLDG-KVTLIDVIERVNKIEGVKR 226

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R ++  P  M+   I+     D L  +LHL +QSGSD+ILK MNR +T  +Y+ I+DRI
Sbjct: 227 IRLSSLEPVIMNGEFIERLLSFDKLCHHLHLSLQSGSDKILKLMNRHYTTAQYQSIVDRI 286

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R    D+A ++D IVGFPGET++DF AT+D V KIG+++   F++SP+ GT    M  QV
Sbjct: 287 REKWDDVAFTTDIIVGFPGETEEDFNATLDFVQKIGFSRIHVFRFSPKKGTKAYEMPNQV 346

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
           D   K  R   +++        F+   VG+ +EVLIE+     G   G S      ++  
Sbjct: 347 DSKEKERRSKIMKEVAASLSYQFHSKFVGKTLEVLIEQDSDFDGYYEGYSGNYIRTLIRK 406

Query: 443 KNHNI-GDIIKVRITDVKISTLYGELV 468
            +  + G+I KV+IT      + GE++
Sbjct: 407 SHMIVHGEIYKVKITQAYRQYVKGEII 433


>gi|238019340|ref|ZP_04599766.1| hypothetical protein VEIDISOL_01204 [Veillonella dispar ATCC 17748]
 gi|237864039|gb|EEP65329.1| hypothetical protein VEIDISOL_01204 [Veillonella dispar ATCC 17748]
          Length = 431

 Score =  395 bits (1016), Expect = e-108,   Method: Composition-based stats.
 Identities = 144/443 (32%), Positives = 244/443 (55%), Gaps = 18/443 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +     + GC++N YD+  M+ +F    YE V+  + AD+ V+NTC +     +K    +
Sbjct: 2   KTVAFTTLGCRVNQYDTDAMKGLFLQNNYEAVDFDEKADIYVINTCSVTNMGEKKSRQLI 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            + +       ++  D  V+V GC AQ + + I      VN+V+G     ++ EL+E+  
Sbjct: 62  RKAK-------RQNEDAYVIVTGCYAQLDPDAIAA-IDGVNLVIGTNNRSKIVELVEQLE 113

Query: 145 FGKRVVDT--DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
             +R ++   D   E  FE + +     ++ R   AF+ IQEGC+ +C FC++PYTRG  
Sbjct: 114 STERQINAVRDIMNESNFEEMPLYGNESDKAR---AFMKIQEGCNNYCAFCIIPYTRGKL 170

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR +  +V EA++L+++G  EI L G ++    G  L G + T +D++ +L EI  L R
Sbjct: 171 KSRKVDDIVQEAKRLVEHGFHEIVLTGIHLG-NYGVELPG-RPTLADVVKALLEIPDLYR 228

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+ +    ++SD L++       + P+LHLP+Q+GSD +LK M R +T  EY+ +I  +
Sbjct: 229 IRFGSIESVEVSDELVELMATNKRVCPHLHLPLQAGSDHVLKLMKRHYTLQEYKDLIASL 288

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           RS   D++I++D I GFP ETD+DF  T++ V +IG+    +F YS R GTP + M +QV
Sbjct: 289 RSRIKDLSITTDIIAGFPQETDEDFEETLNTVREIGFTHIHAFPYSIREGTPAATMPDQV 348

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS-PWLQSVVLN 441
            E VK  R+  L    +    ++  + +G+  E+LIEK  +E G  +G +  ++   V +
Sbjct: 349 PEAVKKTRVALLNGLSQSGYEAYAKSRIGKPGEILIEK--EENGYYMGLTNEYVNGKVKS 406

Query: 442 SKNHNIGDIIKVRITDVKISTLY 464
              H IGD+I   +  ++ + L 
Sbjct: 407 DGTHKIGDLIGGTVVGLEDNYLI 429


>gi|94968901|ref|YP_590949.1| tRNA-i(6)A37 modification enzyme MiaB [Candidatus Koribacter
           versatilis Ellin345]
 gi|123256543|sp|Q1IQH5|MIAB_ACIBL RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|94550951|gb|ABF40875.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Candidatus Koribacter
           versatilis Ellin345]
          Length = 444

 Score =  395 bits (1016), Expect = e-108,   Method: Composition-based stats.
 Identities = 168/449 (37%), Positives = 261/449 (58%), Gaps = 16/449 (3%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+ F+++++GCQMN +DS ++     SQGY +V +  DA LI+ NTC IR+KA +KV+  
Sbjct: 7   PKTFYIETFGCQMNFHDSEKVVGTLISQGYRQVETELDAGLILYNTCSIRDKAEQKVFHR 66

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           L   R L+    +        V GCVAQ EGE+I  R+P V++V G  +Y  L E+L + 
Sbjct: 67  LSEFRQLQKEGKRF------AVLGCVAQQEGEKIFERAPHVSLVAGSASYRNLAEMLVQI 120

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             G + +     ++D+    +       R      ++TI EGCDKFC +CVVPYTRG E 
Sbjct: 121 ESGSQRIT---GLDDRETDQTFETEFTARGNAHRGYITIIEGCDKFCAYCVVPYTRGKER 177

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SRS   V+ EAR++ D G  ++ LLGQNVN++          TF++LL ++ EI G+ R+
Sbjct: 178 SRSAESVLREARQMADAGFTDVQLLGQNVNSYHDPS---GTMTFAELLTAVGEITGIKRV 234

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+TTSHPRD +  +++A  +   L  ++HLPVQSGS ++L+ M R +T  +Y + I  ++
Sbjct: 235 RFTTSHPRDFTRDIVEAIDNHPTLCDHVHLPVQSGSSKVLREMFREYTREQYLERISWMK 294

Query: 324 SVR-PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           + +   ++I++D IVGFPGET+ +F  T+ L+D + Y   FSFKYSPR  TP    ++ V
Sbjct: 295 ATKNRKLSITTDVIVGFPGETETEFEETLALLDHVQYDGVFSFKYSPRPNTPALKYIDTV 354

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
            E  K+ RL  L +  RE Q +     +G+ IEV++E     + + +GR+   +++    
Sbjct: 355 PEQEKSRRLQILMEHQREIQRANYRKHIGETIEVMVEAENATRAQWIGRTSQNKTLNFTV 414

Query: 443 K---NHNIGDIIKVRITDVKISTLYGELV 468
                  IG   +V +T    ++L GELV
Sbjct: 415 PQTVQPEIGSYHQVLVTQAFPNSLVGELV 443


>gi|239906359|ref|YP_002953100.1| tRNA-i(6)A37 modification enzyme MiaB family protein [Desulfovibrio
           magneticus RS-1]
 gi|239796225|dbj|BAH75214.1| tRNA-i(6)A37 modification enzyme MiaB family protein [Desulfovibrio
           magneticus RS-1]
          Length = 446

 Score =  395 bits (1016), Expect = e-108,   Method: Composition-based stats.
 Identities = 162/447 (36%), Positives = 242/447 (54%), Gaps = 14/447 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +F V + GCQMNV D   +     + G+ +    + A+  +L TC +R+K  +KV S +G
Sbjct: 2   KFHVTTMGCQMNVGDGDWLARSLIAAGFTQAPEAE-AECFILFTCSVRDKPEQKVVSEIG 60

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           RI +    R +   +  + V GC AQ  G  + RR P+V +V G       P  L R   
Sbjct: 61  RIAD----RNRHNPNAFIAVGGCTAQQLGTTLWRRFPMVRLVFGTDGIAAAPRALARLAE 116

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
             ++  +     + +          + K    AF++I +GCD +C +C+VP+ RG + SR
Sbjct: 117 EPQLRLSLLDFSEAYPERD--QSWPDDKLPPKAFVSIMQGCDNYCAYCIVPFVRGRQKSR 174

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            L  V+ E + L   GV E+TLLGQNVN+  G    G+  +F+ LL +++ + G+ R+R+
Sbjct: 175 PLPSVIAECQSLASRGVREVTLLGQNVNS-YGLDDAGDGASFAKLLDAVAAVPGIERIRF 233

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
           TTSHP+D+SD +I+    L  L P LHLPVQSGSD IL+ M RR+    Y  +++++R  
Sbjct: 234 TTSHPKDLSDEVIERFAALPQLCPALHLPVQSGSDDILRRMGRRYDTAAYLTLVEKLRRA 293

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            PDIA++SDFIVGFPGET  DF AT++LV K+G+   FSF YS R GT    +  ++   
Sbjct: 294 CPDIALTSDFIVGFPGETRADFEATLELVRKVGFDSGFSFMYSDRPGTASEKLAPKILPE 353

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG----KLVGRSPWLQSVVL- 440
            K+ RL  LQ  L E+  +   A +G+   VLIE   + +G       GR P  + V + 
Sbjct: 354 EKSARLAELQALLDERLAASLAARLGRREVVLIEGESRREGTLGATWRGRDPGGRVVNVP 413

Query: 441 -NSKNHNIGDIIKVRITDVKISTLYGE 466
             +     G  + VRI   K  +L GE
Sbjct: 414 LPAGADYAGRFVAVRIVQAKKHSLVGE 440


>gi|310658985|ref|YP_003936706.1| hypothetical protein CLOST_1681 [Clostridium sticklandii DSM 519]
 gi|308825763|emb|CBH21801.1| conserved protein of unknown function [Clostridium sticklandii]
          Length = 442

 Score =  395 bits (1015), Expect = e-108,   Method: Composition-based stats.
 Identities = 140/453 (30%), Positives = 221/453 (48%), Gaps = 17/453 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + +  F+ + GC  N+ DS  M ++    G ++V+S   AD+ V+NTC   E A E+  +
Sbjct: 1   MNKSVFISTLGCSKNLVDSEVMLNILLENGLQKVDSPQLADIAVINTCGFIESAKEESIN 60

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +  I   K      G    ++V GC++Q   EE+ +  P V+  +G  ++  +  +++ 
Sbjct: 61  EILEIAKYKQ----IGKLKHLIVTGCLSQRYSEELKKELPEVDSFLGTTSFEHIYNIIQG 116

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
              G+     +  + D    L             TAFL I EGCD  CT+C++P  RG  
Sbjct: 117 LELGEN----NSLILDINHDLKPDSKRSLLTEKYTAFLKIAEGCDNLCTYCIIPKLRGKY 172

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR L  +V EA+ L  +GV EI ++ Q+     G  +  EK +   LL  L+ I+ L  
Sbjct: 173 RSRKLEDIVKEAKVLAASGVKEIIVIAQDTT-KYGLDIYNEK-SLPRLLRELNAIEDLNW 230

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+  S+P D+   LI    + D +  Y  +P+Q   D++LK MNR+ T       I  I
Sbjct: 231 IRFLYSYPEDIDLDLILTVKESDKVCSYFDMPIQHSHDQVLKRMNRKTTGKHIEDTIALI 290

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+  P+  + +  I GFPGETD++F A  D V KI + +   F YS   GTP + M  QV
Sbjct: 291 RAHIPEAVLRTTLITGFPGETDEEFDALYDFVKKIEFDRLGVFAYSKEEGTPAAIMSGQV 350

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSV 438
            E +K ER   + +  +E  +  N A +G+  EV+IEK   E      RS    P +  +
Sbjct: 351 AEEIKEERKNKIMQLQQEISLRKNQALIGKDFEVIIEKE-IEPNLYEARSYRDVPEIDGI 409

Query: 439 VLNS--KNHNIGDIIKVRITDVKISTLYGELVV 469
           +      +HN G+ IKV I D     L G+ ++
Sbjct: 410 IYVKALASHNEGEFIKVTIKDAMEYDLLGDEII 442


>gi|303246488|ref|ZP_07332767.1| RNA modification enzyme, MiaB family [Desulfovibrio fructosovorans
           JJ]
 gi|302492198|gb|EFL52073.1| RNA modification enzyme, MiaB family [Desulfovibrio fructosovorans
           JJ]
          Length = 446

 Score =  395 bits (1015), Expect = e-108,   Method: Composition-based stats.
 Identities = 175/449 (38%), Positives = 245/449 (54%), Gaps = 18/449 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +F + + GCQMNV D   +       G+      ++A+L +L TC +REK  +KV S LG
Sbjct: 2   KFHITTMGCQMNVGDGDWLTRSLIGLGFTPAP-EEEAELFILFTCSVREKPEQKVASELG 60

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER--A 143
           RI +      ++  +  V V GCVAQ  G  + RR P+V +V G       P+ L R  A
Sbjct: 61  RIADRH----RDNPNAFVAVGGCVAQQFGTALWRRFPMVRLVFGSDGIAGAPQALSRLAA 116

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             G R+   D++        S  +          AF++I +GCD FC +C+VP+ RG + 
Sbjct: 117 EPGLRLSLLDFTETYPERDQSWPEDTV----PPRAFVSIMQGCDNFCAYCIVPFVRGRQK 172

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR L  VV E   L   G  EITLLGQNVN+  G    G+  +F+ LL +++ I G+ R+
Sbjct: 173 SRGLPAVVAECEALAGRGAREITLLGQNVNS-YGLDASGDGTSFARLLDAVATIPGIARI 231

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+TTSHP+D+SD ++    DL  L P LHLPVQSGSD +L  M RR+    Y +++D++R
Sbjct: 232 RFTTSHPKDLSDDVVARFADLPELCPALHLPVQSGSDAVLTRMGRRYDRAAYLRLVDKLR 291

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
             RP IA+++D IVGFPGETDDDFR T+DLV ++G+   FSF Y  R GT    M  +V 
Sbjct: 292 RARPGIALTTDLIVGFPGETDDDFRRTLDLVREVGFDSGFSFMYCDRPGTVSERMEPKVA 351

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG----KLVGRSPWLQSVV 439
           + VK+ RL  LQ  L E+  +   A VG+  E+LIE   +          GR P  + V 
Sbjct: 352 QEVKSARLAELQALLDERLAAALAAQVGRTTEILIEGASRRDSPTGPSWRGRDPGGRIVN 411

Query: 440 --LNSKNHNIGDIIKVRITDVKISTLYGE 466
             L       G I++ RI   K  +L GE
Sbjct: 412 MALPGVAEAAGTIVRARIRQAKKHSLIGE 440


>gi|224003997|ref|XP_002291670.1| hypothetical protein THAPSDRAFT_41246 [Thalassiosira pseudonana
           CCMP1335]
 gi|220973446|gb|EED91777.1| hypothetical protein THAPSDRAFT_41246 [Thalassiosira pseudonana
           CCMP1335]
          Length = 453

 Score =  395 bits (1015), Expect = e-108,   Method: Composition-based stats.
 Identities = 158/456 (34%), Positives = 264/456 (57%), Gaps = 27/456 (5%)

Query: 26  RFF-VKSYGCQMNVYDSLRMEDMFFSQ-GYERVNSMDD-------ADLIVLNTCHIREKA 76
           +++ + + GCQMNV DS R+  +   + G   ++  ++        D+++LNTC IR+ A
Sbjct: 9   KYYKILTAGCQMNVADSERIMGVLEGELGLTSLDDTEENTNKQTTPDILLLNTCTIRDHA 68

Query: 77  AEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL 136
            +KVY  LG   +LK    ++G  L +VVAGCVAQ EGE +LRR P +++V+GPQ    L
Sbjct: 69  EQKVYDALGPYASLK----RDGKPLAIVVAGCVAQQEGEALLRRFPEIDLVLGPQYIPWL 124

Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
            +LL     G ++  T+  + +             R   V A++ +  GC++ CT+CVVP
Sbjct: 125 GDLLVEVGKGSQLCMTESMIWNWM-------VPIKRGHSVRAWVNVIYGCNEHCTYCVVP 177

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256
             RG+E SRS+  ++ E  +L  +G  E+TLLGQN++A  G+ +   + TF+DLL+ L++
Sbjct: 178 SVRGVEQSRSMEAILQECVQLAASGYKEVTLLGQNIDA-YGRDMTPRR-TFADLLHYLND 235

Query: 257 ---IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
                 + R+RY TSHPR  SD +I A  DLD +    H+P Q+G D++L+ M R +T  
Sbjct: 236 NLPPDTISRIRYVTSHPRYFSDRVIDAVADLDKVCECFHMPFQAGDDQVLRDMRRGYTYA 295

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
            Y  II +IR+  PD +I  D IVGFP ETD+ F+ T+DL++++ +    +F YSPR  T
Sbjct: 296 SYMNIIKKIRAKAPDASICGDIIVGFPNETDEAFQRTLDLMEEVKFDNLNTFAYSPRPNT 355

Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRS 432
             +N   Q+  +V++ERL  +Q    +  +  +    G+++EVL+E ++ K   +++GR+
Sbjct: 356 EAANWENQIPPDVQSERLQRVQALAAKHALERSQRYEGRVVEVLVEDRNPKNGNEVMGRT 415

Query: 433 PWLQSVVLNSK-NHNIGDIIKVRITDVKISTLYGEL 467
              + V      +   G+++ V++ + +  +L G+L
Sbjct: 416 RQGRQVFFEGSVDELKGELVMVKVVEARTWSLVGKL 451


>gi|222823363|ref|YP_002574937.1| tRNA-i(6)A37 thiotransferase [Campylobacter lari RM2100]
 gi|222538585|gb|ACM63686.1| tRNA-i(6)A37 thiotransferase [Campylobacter lari RM2100]
          Length = 432

 Score =  395 bits (1015), Expect = e-108,   Method: Composition-based stats.
 Identities = 157/448 (35%), Positives = 243/448 (54%), Gaps = 18/448 (4%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++ F+++ GC MNV DS  M       + YE      +ADLI++NTC +REK   K++
Sbjct: 1   MSKKLFIQTLGCAMNVRDSEHMIAELKEKENYELTQDAKEADLILINTCSVREKPVHKLF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S +G    +K +  K      + V GC A   G+EI +R+P V+ V+G +   ++ + + 
Sbjct: 61  SEVGSFEKIKKNGAK------IGVCGCTASHLGDEIFKRAPNVDFVLGARNVSKITKAVN 114

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
             +F    +D D S     +          R      ++ I  GCDK CT+C+VP+TRG 
Sbjct: 115 TPKFLGNDIDFDESNYAFADF---------RNSLYKTYVNISIGCDKHCTYCIVPHTRGD 165

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG-EKCTFSDLLYSLSEIKGL 260
           EIS     +  EA K + NG  EI LLGQNVN +  +  +  EK  FSDLL  LSEI+GL
Sbjct: 166 EISIPFEIIKKEALKAVANGAKEIFLLGQNVNNYGKRFSNAHEKINFSDLLEKLSEIEGL 225

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+T+ HP  M D  ++       +   +H+P+QSGS  ILK+M R +T   Y     
Sbjct: 226 ERIRFTSPHPLHMDDRFLEVFSKNPKVCKSMHMPLQSGSSEILKAMKRGYTKEWYLDRAL 285

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++RS+  D++IS+D IV FPGE+D DF  TMD+++K+ + Q FSFKYS R  T  + M  
Sbjct: 286 KLRSMCKDVSISTDVIVAFPGESDKDFEDTMDVLEKVRFEQMFSFKYSKRPLTKAATMPN 345

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440
           Q+ +++ ++RL  LQ +  E           +  EVL E+  + +G + GRS     + +
Sbjct: 346 QIPDDIASKRLSILQARHTEILDEIVAKQKDKEFEVLFEEL-RSEGFVAGRSDNNFLIQV 404

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 +G + KV+IT+ +   L GE++
Sbjct: 405 KGSEELLGQMTKVKITNPRRMVLNGEIL 432


>gi|188586093|ref|YP_001917638.1| MiaB-like tRNA modifying enzyme YliG [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|238066413|sp|B2A3C0|RIMO_NATTJ RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|179350780|gb|ACB85050.1| MiaB-like tRNA modifying enzyme YliG [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 444

 Score =  395 bits (1015), Expect = e-108,   Method: Composition-based stats.
 Identities = 126/448 (28%), Positives = 219/448 (48%), Gaps = 16/448 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +  + S GC  N  D+  M+ +  +  Y+  +   DAD+I++NTC   + A E+    + 
Sbjct: 2   KVGIISLGCAKNQVDTEVMQGILENSNYKMTDDYYDADIIIVNTCGFIDDAKEESVDHIL 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +  LK      G   +++VAGC++Q   E +    P ++ ++G  T  ++ E++  A  
Sbjct: 62  EVAQLKE----TGKLKVLIVAGCLSQRYQESLKEEIPEIDAMIGTDTQDKITEVISSALK 117

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G  +  + Y   +K +    +   Y  + G +A++ I EGC  +C++C +P  RG   SR
Sbjct: 118 GNYI--SFYDRLNKIDEQLFLRQPY--QPGPSAYIKIAEGCHNYCSYCAIPLIRGGYRSR 173

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           ++  +  EA   I+ G  E+TL+ Q+     G  + G K +   LL  L+ I G   +R 
Sbjct: 174 TIEDIKIEANHFIEKGSKELTLIAQDTT-NYGSDIYG-KFSLDTLLDELATIPGDFWIRV 231

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
             ++P  ++D LI+     + +  YL +P+Q   D IL SMNR     +   +I  +R  
Sbjct: 232 LYAYPTRITDSLIEVINRHEKICSYLDIPLQHIDDDILTSMNRGGNKEQILNLIHNLRKN 291

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            PDI + +  IVGFPGETD+ ++  +  + +I +  A  FKYS    T   N  ++V E+
Sbjct: 292 IPDITLRTSLIVGFPGETDEKYQNLISFMQEIEFDHAGIFKYSDEEDTQAYNFKDKVSED 351

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-----GKLVGRSPWLQS-VV 439
           VK +R     +  +E     N+  VG  + VLIE+  +++     G+  G +P +   V+
Sbjct: 352 VKEQRYQEAWEVQKEITRKKNEGLVGTEMRVLIEEALEDEPTTKVGRTEGHAPEVDGAVI 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGEL 467
           +     + GD I V I       L GE+
Sbjct: 412 IPDCEASSGDFINVEIVQALDYDLIGEM 439


>gi|255002985|ref|ZP_05277949.1| 2-methylthioadenine synthetase (miaB) [Anaplasma marginale str.
           Puerto Rico]
          Length = 425

 Score =  395 bits (1015), Expect = e-108,   Method: Composition-based stats.
 Identities = 205/426 (48%), Positives = 282/426 (66%), Gaps = 13/426 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + +  +++SYGCQMNVYDSL +ED+    G+  V   +DAD+I++NTCH+REKAAEK+YS
Sbjct: 1   MTKGLYIESYGCQMNVYDSLMVEDILRPLGFAAVQRPEDADIIMVNTCHVREKAAEKLYS 60

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            LGR+R L+          L+VVAGCVAQAEGE +  R+P V+VVVGPQ+ + LPEL+ +
Sbjct: 61  ALGRMRMLRKE------GALIVVAGCVAQAEGEAVFERAPFVDVVVGPQSIHTLPELIMK 114

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           A    + ++ ++    KF+   ++       RGV+AF+++QEGCDKFCTFCVVPYTRG E
Sbjct: 115 ATRDAKQMNVEFPAISKFD---VISTDLLVSRGVSAFVSVQEGCDKFCTFCVVPYTRGPE 171

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SRS+  V+ E RKL D G  E+ LLGQNVNA+ G    G +     L+  ++E+ G+ R
Sbjct: 172 YSRSVEDVLAEVRKLADGGTKEVVLLGQNVNAYHG-TYKGNEWDLGRLIRKVAEVDGIER 230

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +RYTTSHP+DM   L  AH     L+P +HLPVQSGSD +L+ MNR+H+  EY  IID +
Sbjct: 231 IRYTTSHPKDMHSSLYDAHKHEPKLLPCVHLPVQSGSDSVLRKMNRKHSVQEYMDIIDTL 290

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           +  R DIA+SSDFIVGFPGET++DF ATM+LV  +G+A ++SFKYSPR GTPG+    QV
Sbjct: 291 KEARSDIALSSDFIVGFPGETEEDFEATMNLVRHVGFATSYSFKYSPRPGTPGAEYTNQV 350

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI---EKHGKEKGKLVGRSPWLQSVV 439
            E  K+ RL  LQ  L  QQ  F  + +G+ + VL+   E       ++ G+S  +Q V 
Sbjct: 351 PEEEKSSRLHRLQHLLLTQQRLFTKSMIGKTVSVLVCGTEGSRSCSNEVFGKSEHMQPVY 410

Query: 440 LNSKNH 445
           ++    
Sbjct: 411 ISVDGD 416


>gi|170077243|ref|YP_001733881.1| tRNA modifying enzyme MiaB-like protein [Synechococcus sp. PCC
           7002]
 gi|238066620|sp|B1XPZ7|RIMO_SYNP2 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|169884912|gb|ACA98625.1| tRNA modifying enzyme MiaB-like protein [Synechococcus sp. PCC
           7002]
          Length = 439

 Score =  395 bits (1015), Expect = e-108,   Method: Composition-based stats.
 Identities = 131/450 (29%), Positives = 224/450 (49%), Gaps = 19/450 (4%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
                 +   GC+ N  DS  M  +  + GYE   + + AD +++NTC   E A  +   
Sbjct: 3   TKPTIAISHLGCEKNRIDSEHMIGLLVNAGYEVDANEELADYVIVNTCSFIEDARAESVR 62

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            L  +               +V++GC+AQ   E++L   P    +VG   Y+++ ++++R
Sbjct: 63  TLVELAEANKK---------IVISGCMAQHFQEQLLEELPEAVALVGTGDYHKIVDVIQR 113

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
              G+ V +    +    +        Y       A+L + EGCD  C FC++P+ RG +
Sbjct: 114 TEQGEIVKEVSQEITYIADETVP---RYRTTNEAVAYLRVAEGCDYRCAFCIIPHLRGDQ 170

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR +  +V EA++L + GV EI L+ Q +    GK + G K   ++LL +L  +  +  
Sbjct: 171 RSRPIESIVAEAKQLAEQGVQEIILISQ-ITTNYGKDIYG-KPKLAELLRALGGVD-VPW 227

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R   ++P  ++  +I A  D   ++PYL LP+Q     IL++MNR        +II+ +
Sbjct: 228 IRIHYAYPTGLTPEVIAAMRDTPNVIPYLDLPLQHSHPDILRAMNRPWQGRVNDRIIEDL 287

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           +   PD  + + FIVGFPGET++ F+  +D V +  +     F +S   GTP  ++  Q+
Sbjct: 288 KKALPDAILRTTFIVGFPGETEEHFQHLVDFVKRHEFDHVGVFTFSAEEGTPAIDLPNQL 347

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSV 438
            ++VK  R   L +  +      N+ CVGQ ++VLIE+     G+L+GRS    P +  +
Sbjct: 348 PQSVKDSRRDALMEIQQPIAARRNELCVGQTVDVLIEQENPATGELIGRSPRFAPDVDGL 407

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           V  +   ++G I+ V+IT   I  LYG +V
Sbjct: 408 VYVTGEASLGSIVPVQITAADIYDLYGTIV 437


>gi|238917054|ref|YP_002930571.1| 2-alkenal reductase [Eubacterium eligens ATCC 27750]
 gi|238872414|gb|ACR72124.1| 2-alkenal reductase [Eubacterium eligens ATCC 27750]
          Length = 450

 Score =  395 bits (1014), Expect = e-107,   Method: Composition-based stats.
 Identities = 130/447 (29%), Positives = 221/447 (49%), Gaps = 18/447 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC  N+ D+  M  +   +G+E  +    AD+IV+NTC     A ++  + + 
Sbjct: 9   KIMFASLGCDKNLVDTENMLGILNDKGFEFTDDETQADVIVVNTCCFIGDAKQESINTIL 68

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +   K   +       ++V GC+A    +EI++  P V+  +G  +Y ++ E++     
Sbjct: 69  EMAQHKEDAV----CKALIVTGCLAHRYKDEIIKEIPEVDAFLGTTSYDKIAEVVTSVLE 124

Query: 146 GKRVVDTDYSVEDKFERLSIV-DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
           GK      ++V D   RL IV +       G   +L I EGCDK CT+C++P  RG   S
Sbjct: 125 GK-----GFNVVDDANRLPIVKEKRIITTPGYFEYLKIAEGCDKHCTYCIIPKVRGNFRS 179

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
             +  +V++A+ L+ NG  E+ L+ Q      G  L G+K +   L++ L++I+ L  +R
Sbjct: 180 YPVEYLVEQAKHLVHNGAKELILVAQETT-LYGTDLYGKK-SLPMLIHELAKIEDLKWIR 237

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
               +P +++D LI+A  +   +  YL +P+Q  SD +LK M R+    E   I+ ++R 
Sbjct: 238 IQYCYPEEINDELIEAIKNEPKVCHYLDMPIQHASDNVLKRMGRKTDKQELLDIVAKLRK 297

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             PDIA+ +  I GFPGET  D    M+ +D+I + +   F YS    TP + M +Q+D+
Sbjct: 298 EIPDIALRTTLIAGFPGETQADHEEVMEFIDEIEFDRLGVFTYSREEDTPAATMPDQIDQ 357

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVL 440
           ++       L    +E  +  +   VG+ I+V++E +  E    VGRS    P +  +V 
Sbjct: 358 DIMDTWRDELMALQQEISIDKSAQMVGKTIDVMVEGYIAEDNTYVGRSYKDAPNVDGMVF 417

Query: 441 N--SKNHNIGDIIKVRITDVKISTLYG 465
               +    GD + V+IT      L G
Sbjct: 418 FECDRELMSGDFVSVKITSSTEYDLMG 444


>gi|310819551|ref|YP_003951909.1| MiaB-like tRNA modifying enzyme YliG [Stigmatella aurantiaca
           DW4/3-1]
 gi|309392623|gb|ADO70082.1| MiaB-like tRNA modifying enzyme YliG [Stigmatella aurantiaca
           DW4/3-1]
          Length = 459

 Score =  395 bits (1014), Expect = e-107,   Method: Composition-based stats.
 Identities = 125/445 (28%), Positives = 208/445 (46%), Gaps = 21/445 (4%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC  N  DS  M      +GY  V    +A +IV+NTC     A ++    +  +   
Sbjct: 2   TLGCPKNRVDSEVMLGTLKQRGYRLVQEPAEAQVIVVNTCAFIGPAKQESVDSILEMAEY 61

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
           K    K G    +VV GC++Q  G E+ +  P V+  +G   Y ++ +LL      ++V+
Sbjct: 62  K----KSGACSTLVVTGCLSQRHGGELAQEMPEVDHFLGTSAYAQIGDLLAAEASPRQVI 117

Query: 151 -DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209
            D DY    +  R        N     TA+L + EGCD  C FC++P  RG + SR ++ 
Sbjct: 118 PDPDYIHNAETPR-------ENSMPSYTAYLKVSEGCDNACAFCIIPTLRGGQRSRPIAD 170

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSH 269
           ++ EA +L D GV E+ L+ Q++ A  G  L G K    DLL  L ++  +  +R   ++
Sbjct: 171 IIAEATRLADQGVQELNLVAQDLTA-YGHDLPG-KPKLHDLLKELVKVD-VRWIRLHYAY 227

Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329
           PR   D LI+       +  YL +P+Q  SD++L SM R   +     ++ ++R+  P +
Sbjct: 228 PRIFPDELIEVMATEKKIAKYLDMPLQHASDKLLTSMKRGRNSQFLTDLLAKLRARVPGL 287

Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAE 389
            + +  IVG PGET++DF    + V    + +   F+YS   GT   +M  ++ +     
Sbjct: 288 VMRTSLIVGLPGETEEDFELLKEFVKTQRFERLGVFQYSDEEGTAAYDMPNKIPQKTIER 347

Query: 390 RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-----GKLVGRSPWLQS-VVLNSK 443
           R   +    +      N   VG+ IEVL+E    E      G+  G++P +   V +N  
Sbjct: 348 RWREIMAIQKRINREQNKKLVGKRIEVLVEGTSPETEHLLVGRHEGQAPEIDGQVYINDG 407

Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468
               G+ + + +T+     L G +V
Sbjct: 408 LAYPGEFVTLEVTEAHDYDLVGRVV 432


>gi|312622756|ref|YP_004024369.1| miab-like tRNA modifying enzyme ylig [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312203223|gb|ADQ46550.1| MiaB-like tRNA modifying enzyme YliG [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 440

 Score =  395 bits (1014), Expect = e-107,   Method: Composition-based stats.
 Identities = 130/449 (28%), Positives = 220/449 (48%), Gaps = 17/449 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC  N+ DS  M       G+E  ++ +DAD+IV+NTC     A ++    + 
Sbjct: 3   KVGFVSLGCNKNLVDSEIMMGACVKAGFEITSNAEDADVIVVNTCGFINDAKQESIDTIL 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +   KN + K      ++V GC+ Q   +EIL + P ++ ++G +   +LPE+++    
Sbjct: 63  DMAEYKNKKCK-----FLIVTGCLTQRYKDEILEQMPEIDAILGVKEMLKLPEVIKDLYE 117

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           GK+ +   +     F  LS +           A++ I EGC+  C++C +P  RG   SR
Sbjct: 118 GKQKIKV-FDDTSSFVYLSSMPRMIA-TPSYYAYIKIAEGCNNRCSYCSIPLIRGKYTSR 175

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            +  +V EA++L + G  EI L  Q+     G  L G+K   + LL  L +I+ +  +R+
Sbjct: 176 PIEDIVKEAKELAEKGYKEIVLTAQDTT-KYGLDLYGKKMLHA-LLEELEKIEKIKWIRF 233

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
             S+P D+ + LI+       ++ Y  +P+Q  +DRILK MNR+ T    +++I++IR  
Sbjct: 234 LYSYPEDVDESLIEVVKSSSKIVNYFDIPIQHINDRILKLMNRKTTKEGIKRLIEKIRRS 293

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
             ++ I +  +VGFP ETD++F      +    + +  +F YS   GT  S +  Q+D+ 
Sbjct: 294 FDEVIIRTTVLVGFPTETDEEFEELCSFIKWAEFDRLGAFMYSQEEGTLASQLP-QIDDE 352

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQS--VV 439
           VK  R   +    R+     N   VG+  EV+IE   K     +GRS    P +    +V
Sbjct: 353 VKQRRYENILNIQRKISKRQNKKRVGREYEVVIEAKDK-NNFYIGRSQFEAPEVDGKVLV 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
            + K    G  + V+I D     L GE++
Sbjct: 412 FSQKKLTAGQFVNVKILDAFEYDLVGEII 440


>gi|210622624|ref|ZP_03293284.1| hypothetical protein CLOHIR_01232 [Clostridium hiranonis DSM 13275]
 gi|210154125|gb|EEA85131.1| hypothetical protein CLOHIR_01232 [Clostridium hiranonis DSM 13275]
          Length = 445

 Score =  395 bits (1014), Expect = e-107,   Method: Composition-based stats.
 Identities = 134/449 (29%), Positives = 221/449 (49%), Gaps = 17/449 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +  ++S GC  N+ D+  M  +   +GYE V    +AD+I++NTC     A ++    + 
Sbjct: 3   KIALESLGCSKNLMDAEIMTGILKEKGYEFVEEFAEADIIIVNTCGFIRDAKQESIDTIV 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +  LK      G    ++V GC+AQ   +E+L   P ++ +VG   +  + E+++R   
Sbjct: 63  ELSQLKE----FGKLKYLIVTGCLAQRYADELLEEIPEIDAIVGTGNFMNISEIIDRLES 118

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            K V +         E L      Y       A+L I EGC   CT+C++P  RG   SR
Sbjct: 119 EKNVTEIGNIEFAFDETLP----RYVSTPEHMAYLKIGEGCSNHCTYCIIPKLRGKYRSR 174

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            +  +V+EA+ L   GV E+ ++ Q+     G+ L GE    ++LL  L+ I+G+  +R 
Sbjct: 175 KIEDIVEEAKTLAAEGVKELVVIAQDTT-RYGEDLYGE-AKLAELLEELAGIEGIKWIRI 232

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
             S+P  +++ LI      D +  Y  +P+Q  S+R+LK MNRR +  + R  ++ IRS 
Sbjct: 233 MYSYPESITEKLIDVIAAHDNICSYFDMPIQHASNRVLKRMNRRTSKEDIRNKVEMIRSK 292

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            PD  I +  IVGFPGET++D    ++ + +I + +  +F YS    TP   M   +DE 
Sbjct: 293 IPDAVIRTTVIVGFPGETEEDLEELIEFMKEIKFDRLGAFAYSREEDTPADRMDGHMDEE 352

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVL- 440
           +K ER   +    +      N     ++ EVLI +   E+G  VGR+      + SVV  
Sbjct: 353 IKEERRDRVMMVQQAISEEINQKREDKVFEVLI-EEEAEEGVYVGRTQGDAEEIDSVVYV 411

Query: 441 -NSKNHNIGDIIKVRITDVKISTLYGELV 468
            + +   IG  + V IT+     L G++V
Sbjct: 412 NSDEELEIGSFVNVYITEAMEYDLIGDVV 440


>gi|269797947|ref|YP_003311847.1| MiaB-like tRNA modifying enzyme [Veillonella parvula DSM 2008]
 gi|269094576|gb|ACZ24567.1| MiaB-like tRNA modifying enzyme [Veillonella parvula DSM 2008]
          Length = 431

 Score =  395 bits (1014), Expect = e-107,   Method: Composition-based stats.
 Identities = 143/443 (32%), Positives = 242/443 (54%), Gaps = 18/443 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +     + GC++N YD+  M+ +F    YE V+  + AD+ V+NTC +     +K    +
Sbjct: 2   KTVAFTTLGCRVNQYDTDAMKGLFLQNNYEAVDFDEKADIYVINTCSVTNMGEKKSRQLI 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            + +       ++  D  V+V GC AQ + + I      VN+V+G     ++ EL+E+  
Sbjct: 62  RKAK-------RQNEDAYVIVTGCYAQLDPDAIAA-IDGVNLVIGTNNRSKIVELVEQLE 113

Query: 145 FGKRVVDT--DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
             +R ++   D   E  FE + +     ++ R   AF+ IQEGC+ +C FC++PYTRG  
Sbjct: 114 STERQINAVRDIMKESNFEEMPLFGNESDKTR---AFMKIQEGCNNYCAFCIIPYTRGKL 170

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR +  +V EA++L+D+G  EI L G ++    G  L G + T +D++ +L EI  L R
Sbjct: 171 KSRKVDDIVQEAKRLVDHGFHEIVLTGIHLG-NYGVELPG-RPTLADVVKALLEIPNLYR 228

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+ +    ++SD L++       + P+LHLP+Q+GSD +LK M R +T  EY+ +I  +
Sbjct: 229 IRFGSIESVEVSDELVELMATNKRVCPHLHLPLQAGSDHVLKLMKRHYTLQEYKDLITSL 288

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           RS   D++I++D I GFP ETD+DF  T++ V +IG+    +F YS R GTP + M +QV
Sbjct: 289 RSRIKDLSITTDIIAGFPQETDEDFEETLNTVREIGFTHIHAFPYSIREGTPAATMADQV 348

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS-PWLQSVVLN 441
            E VK  R+  L    +     +  + +G+  E+LIEK  +E G  +G +  ++   V +
Sbjct: 349 PEAVKKTRVALLNGLSQSGYERYAKSRIGKPGEILIEK--EENGYYMGLTNEYINGKVKS 406

Query: 442 SKNHNIGDIIKVRITDVKISTLY 464
                IGD++   +  ++ + L 
Sbjct: 407 DGTRKIGDLVGGTVVGLEDNYLI 429


>gi|83589922|ref|YP_429931.1| hypothetical protein Moth_1074 [Moorella thermoacetica ATCC 39073]
 gi|123752930|sp|Q2RJK1|RIMO_MOOTA RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|83572836|gb|ABC19388.1| SSU ribosomal protein S12P methylthiotransferase [Moorella
           thermoacetica ATCC 39073]
          Length = 432

 Score =  394 bits (1013), Expect = e-107,   Method: Composition-based stats.
 Identities = 131/444 (29%), Positives = 215/444 (48%), Gaps = 18/444 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R  V + GC  N  +S  M  +      E V+    A+++++NTC     A E+    + 
Sbjct: 3   RVAVITLGCPKNQVESEYMLGILEKNHLEVVSDPRQAEVVIINTCSFITAAREEALDTIL 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +        +      ++VAGC+AQ    E+ +  P     +GP    RLPE++ R   
Sbjct: 63  ELA-------RAANHPRLIVAGCLAQQYASELWQELPEAAAFIGPGATGRLPEIINRVLK 115

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G+RV+D         E   +++ G        A+L I EGC+  CT+C +P  +G   SR
Sbjct: 116 GERVLDVPGPEMITGELPRLIEDGKPF-----AYLKIAEGCNNRCTYCTIPSIKGPYRSR 170

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            L +VV EA  L   G+ E+ L+ Q+  A  G    GE     +LL  L+ I+G+  +R 
Sbjct: 171 PLEKVVAEAVSLAARGIKELVLVAQDTTA-YGLDCYGE-YRLPELLRRLARIEGIEWVRL 228

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
             ++P  ++  LI+       ++PYL LP+Q  S+ +L+ M R  T     + I+ +R  
Sbjct: 229 LYAYPTRITPELIEVMATEPGVVPYLDLPLQHASEGVLRRMGRPGTGAAGLRAIESLRRA 288

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P+I I S FIVGFPGE ++DF+  +D +         +FK+SP  GT  +++  QV E 
Sbjct: 289 IPEITIRSTFIVGFPGEEEEDFQILLDFLTDARLDWVGAFKFSPEEGTIAASLPGQVPEE 348

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV-LNSKN 444
           VK ER   L    +    + N+  +G+ ++VL  K G E G+ + ++P +  VV +    
Sbjct: 349 VKEERYQRLMLHQQSITRACNEGWLGREVQVL--KEGPEVGRSMRQAPEVDGVVYVKGDP 406

Query: 445 HNIGDIIKVRITD-VKISTLYGEL 467
              G ++ V++T    I    GE+
Sbjct: 407 SPAGSMVTVKLTQLYNIYDFLGEI 430


>gi|323141892|ref|ZP_08076753.1| tRNA methylthiotransferase YqeV [Phascolarctobacterium sp. YIT
           12067]
 gi|322413639|gb|EFY04497.1| tRNA methylthiotransferase YqeV [Phascolarctobacterium sp. YIT
           12067]
          Length = 437

 Score =  394 bits (1013), Expect = e-107,   Method: Composition-based stats.
 Identities = 147/445 (33%), Positives = 234/445 (52%), Gaps = 12/445 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++    + GC++N  D+  ME +F + GYE V   + AD+ ++NTC +      K    +
Sbjct: 2   RKIAFYTLGCKVNQADTASMEGIFRASGYEVVPFGEPADVYLVNTCVVTNTGQRKSRQII 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R        ++     LVVV GC  Q   EE+      V+V++G Q   R+ EL+E A 
Sbjct: 62  NRA-------VRHNPLSLVVVTGCYPQTAPEEVRA-IEGVDVIIGNQERGRIVELVEEAL 113

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
             KR    D   +   +      G         AFL IQEGC+++CT+C++P+ RG   S
Sbjct: 114 EHKRTEILDNVQQMTVDTKFEELGVGTETDKTRAFLKIQEGCNQYCTYCIIPFARGPLRS 173

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL--DGEKCTFSDLLYSLSEIKGLVR 262
           RSL  + +E  KL+  G  E+ L+G ++    GK L  +G+  T  D + +   ++G+ R
Sbjct: 174 RSLDSIREEVGKLVAAGYKEVVLIGIHLG-CYGKELAKEGKHVTLYDAVKAALSVEGVQR 232

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R  +    ++   L++   +   L  +LHLP+QSG D+IL++M+R +    + ++++ I
Sbjct: 233 VRLGSLESVEVEPRLLQLMAEEPRLQRHLHLPLQSGCDKILRAMHRPYDTKRFTELVNEI 292

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+  PD+AI++D IVGFPGE ++DF  T++   K G+A+   F YS R GTP + M EQV
Sbjct: 293 RAQVPDVAITTDVIVGFPGENEEDFATTLEFAKKCGFAKMHIFPYSKRKGTPAAEMKEQV 352

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
           DE VK+ER   L K   E       + VG++ EVL E+   ++  + G       VV+  
Sbjct: 353 DEAVKSERAARLAKVDEELHQQMLQSTVGKVEEVLFEQPVDDE-HMEGLCGPYLRVVVPG 411

Query: 443 KNHNIGDIIKVRITDVKISTLYGEL 467
                  I+KV+IT +K   L GEL
Sbjct: 412 TAELANTIVKVKITGIKEDFLLGEL 436


>gi|237733845|ref|ZP_04564326.1| tRNA 2-methylthioadenine synthetase [Mollicutes bacterium D7]
 gi|229383183|gb|EEO33274.1| tRNA 2-methylthioadenine synthetase [Coprobacillus sp. D7]
          Length = 415

 Score =  394 bits (1013), Expect = e-107,   Method: Composition-based stats.
 Identities = 163/422 (38%), Positives = 244/422 (57%), Gaps = 14/422 (3%)

Query: 48  FFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAG 107
             S  Y+    + +AD+IVLNTC IRE A EKV+  +G ++NLK    K   +L+  + G
Sbjct: 1   MESMSYQPTTEIKEADVIVLNTCAIRENAEEKVFGKVGYVKNLK----KTNPNLIFAMCG 56

Query: 108 CVAQ--AEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSI 165
           C+AQ       IL + P V+++ G    +RLPELL+ A + K ++   +S E      + 
Sbjct: 57  CMAQEEVVVNRILEKHPHVDLIFGTHNIHRLPELLKDALYSKEMIVEVWSKEGDVIENAP 116

Query: 166 VDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEI 225
           V     R     A++ I  GC+KFCT+C+VPYTRG E SR    ++ E  +L+  G  EI
Sbjct: 117 VR----RDNKYKAWVNIMYGCNKFCTYCIVPYTRGKERSRLAKDIIKEVEELVAEGYQEI 172

Query: 226 TLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLD 285
           TLLGQNVN+  GK L GE   FS+LL  +++   + R+R+TTSHP D S+ +IK     D
Sbjct: 173 TLLGQNVNS-YGKDL-GEDYNFSNLLEDVAK-TNIPRIRFTTSHPWDFSEDMIKIIAKYD 229

Query: 286 VLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDD 345
            +MP +HLPVQSG++ +LK M RR++  +Y ++  +I+   PD  +++D IVGFP ET +
Sbjct: 230 NIMPAIHLPVQSGNNEVLKLMGRRYSREQYLELFHKIKEYIPDCTVTTDIIVGFPNETHE 289

Query: 346 DFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSF 405
            +  T+ L  +  Y  A++F YSPR GTP + M++ V  + K +RL  L + + E+    
Sbjct: 290 QYLDTLSLYQECEYDLAYTFVYSPRAGTPAAKMVDNVASDEKDQRLYKLNEIVNEKAYKQ 349

Query: 406 NDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLY 464
           N   + +I+EVL+E    K+   L G +   + V       +IG IIKV+IT+ K   L 
Sbjct: 350 NQRFLNKIVEVLVEGTSKKDDSMLTGYTRHQKLVNFKGDPKDIGKIIKVKITEAKTWALK 409

Query: 465 GE 466
           GE
Sbjct: 410 GE 411


>gi|85858115|ref|YP_460317.1| tRNA 2-methylthioadenine synthetase -like protein [Syntrophus
           aciditrophicus SB]
 gi|123725210|sp|Q2LQ68|RIMO_SYNAS RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|85721206|gb|ABC76149.1| tRNA 2-methylthioadenine synthetase -like protein [Syntrophus
           aciditrophicus SB]
          Length = 453

 Score =  394 bits (1013), Expect = e-107,   Method: Composition-based stats.
 Identities = 125/450 (27%), Positives = 204/450 (45%), Gaps = 14/450 (3%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
             + S GC  N+ DS  M  +    G   V+  ++AD+++LNTC     A E+    + R
Sbjct: 6   VHIVSLGCPKNLIDSEVMAALLEQAGCRIVSGPEEADILLLNTCAFILPAREESIDEIFR 65

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           +   K    K G    ++V GC+ Q  G E+    P V++ +G      + + L     G
Sbjct: 66  LAEWK----KAGKCRHLIVTGCLPQRYGAELAAELPEVDLFLGISEVPNIADHLRVLMEG 121

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           K        V +    +             +A+L I EGC   C++C++P  RG   SR 
Sbjct: 122 KHSEKNRVIVTNPLFLMDAGHPRLLSTPPYSAYLKIAEGCSNRCSYCIIPRLRGKARSRP 181

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
           +  ++ EA  L+D GV E+ L+ Q+  A  G+ L+G K T + LL  L+ +  L  +R  
Sbjct: 182 IEDILREAEDLVDRGVRELILVAQDTTA-YGRDLEG-KPTLALLLRELAGLNTLAWIRIL 239

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
            ++P  ++D L+    + D +  YL +P+Q   D IL +M RR  ++  R  ++R R+V 
Sbjct: 240 YTYPTGLTDELLNVIANQDRICSYLDVPIQHIDDDILAAMKRRGDSHLIRNSLERARAVI 299

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           PD+A+ +  I GFPGET   F   +  V +  +     F YSP  GTP   +  QV +  
Sbjct: 300 PDLALRTSLITGFPGETPAKFHRLIAFVQETRFDHLGVFPYSPEEGTPAEKLPRQVSQRT 359

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGR----SPWLQSVVLN 441
           K  R   L ++        N   VG + EVLIE         ++GR    +P +  +   
Sbjct: 360 KETRRNLLMEEQAVISHEINQTLVGSLQEVLIEGPSSSPDYPMIGRCRRQAPDIDGLTYV 419

Query: 442 SK---NHNIGDIIKVRITDVKISTLYGELV 468
                    G +++ RI       L+ E++
Sbjct: 420 KGGKQPFLPGSLVQCRIVAADDYDLFAEVI 449


>gi|254456428|ref|ZP_05069857.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Candidatus Pelagibacter
           sp. HTCC7211]
 gi|207083430|gb|EDZ60856.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Candidatus Pelagibacter
           sp. HTCC7211]
          Length = 442

 Score =  394 bits (1013), Expect = e-107,   Method: Composition-based stats.
 Identities = 200/447 (44%), Positives = 306/447 (68%), Gaps = 14/447 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + Q+ F+K++GCQMN YDS R+ D     G+++    ++A+  +LNTCHIR+KA EKVY 
Sbjct: 1   MNQKIFIKTFGCQMNEYDSNRIYDSVKKIGFQKTEKYEEANCYLLNTCHIRDKAKEKVYH 60

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPE-LLE 141
            +GR++ +  S+ K     LV++AGCVAQAE +E+L+R P +++V+GPQ+Y+++ + +L 
Sbjct: 61  EIGRVKKIFRSKQKP----LVIIAGCVAQAENQEMLKREPYIDLVIGPQSYHKINDTILN 116

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
                K++ +T++    KF+ L+ ++        +++FLTIQEGCDKFC FCVVPYTRG 
Sbjct: 117 HIEKKKKIEETEFDAISKFDYLNKINNDSG---KISSFLTIQEGCDKFCHFCVVPYTRGP 173

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E SR L Q++DEA+ L DNG  EI LLGQNVNA+       E+   S+L++ + +I  + 
Sbjct: 174 EYSRPLEQILDEAKYLADNGAQEIVLLGQNVNAYSY-----EQNKLSNLIFEIEKIPQIK 228

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+RYTTSHP+DMSD LIK +     LMP +HLPVQSGS++IL+ MNR+HT  EY +I D+
Sbjct: 229 RIRYTTSHPKDMSDDLIKVYKSSKKLMPLVHLPVQSGSNKILERMNRKHTISEYHKIFDK 288

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           ++ + P+I  SSDFI+G+PGE ++DF+AT +L++KI +  +FSF +SPR GT  +++ E 
Sbjct: 289 LKDINPNIEFSSDFIIGYPGEEEEDFQATFELINKIKFINSFSFIFSPRPGTVAADL-EL 347

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           +D+ +  ERL  +Q +L E Q++ N +   + I VL+E    +K ++ GRS ++ SV+ N
Sbjct: 348 IDKKISMERLEIIQNQLFENQINMNKSLENKTINVLVENLTDDKTQVFGRSEYMTSVIFN 407

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
            K  +IG I+ VRI     STL+GE++
Sbjct: 408 GKKEDIGKILPVRIIKSNRSTLFGEII 434


>gi|160892570|ref|ZP_02073360.1| hypothetical protein CLOL250_00099 [Clostridium sp. L2-50]
 gi|156865611|gb|EDO59042.1| hypothetical protein CLOL250_00099 [Clostridium sp. L2-50]
          Length = 438

 Score =  394 bits (1013), Expect = e-107,   Method: Composition-based stats.
 Identities = 133/449 (29%), Positives = 217/449 (48%), Gaps = 19/449 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +  + S GC  N+ DS  M  +    G+E  N   +A+ +V+NTC   + A E+  + + 
Sbjct: 2   KVLMVSLGCDKNLVDSEVMLGLLHKAGHEITNDEHEAEAVVINTCAFIKDAQEESINTII 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
               LK    K G    ++V GC++Q   ++IL   P ++ +VG   Y  + + +     
Sbjct: 62  EYGELK----KTGSLKKLIVTGCLSQRYKDDILAELPEIDTIVGAANYDAIVDAIGSEEE 117

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
              V D +Y  E        V G         A+L I EGC K CT+C +PY RG   S 
Sbjct: 118 HSFVTDINYMPE-------AVGGRIVTTGASMAYLKIAEGCGKMCTYCAIPYIRGKYRSI 170

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            + Q++  A++L   GV E+ L+ Q      G  L GEK T   LL+ L +I+ +  +R 
Sbjct: 171 PMEQLLASAKELAAQGVKELILVAQETT-LYGVDLYGEK-TLPKLLHELCKIEEIQWIRL 228

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
              +P +++D LI    + + +  YL +P+Q   D +L+ M RR    +  ++I ++R  
Sbjct: 229 MYCYPEEITDELIDTIAEEEKVCHYLDIPIQHSEDPVLRRMGRRTCKKDIVELIAKLRIR 288

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            PDIAI +  I GFPGET+ D  A M+ V++  + +   F YSP  GTP ++   Q++  
Sbjct: 289 IPDIAIRTTLIAGFPGETEADHEALMEFVNESEFDRLGVFTYSPEEGTPAASFPNQIENE 348

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVLN 441
           V  +    +    +E     N   +G+ + VLIE +  E    VGR+    P +  +V  
Sbjct: 349 VAEKWRDDIMALQQEVSYDKNQELLGKSLTVLIEGYVAEDDVYVGRTYRDAPDVDGMVFV 408

Query: 442 SKNHNI--GDIIKVRITDVKISTLYGELV 468
              + +  G  ++VRITD     L GE++
Sbjct: 409 DAPYELMSGTFVQVRITDANEYDLTGEMI 437


>gi|312793173|ref|YP_004026096.1| miab-like tRNA modifying enzyme ylig [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312180313|gb|ADQ40483.1| MiaB-like tRNA modifying enzyme YliG [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 440

 Score =  394 bits (1013), Expect = e-107,   Method: Composition-based stats.
 Identities = 133/449 (29%), Positives = 218/449 (48%), Gaps = 17/449 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC  N+ DS  M       G+E  ++ +DAD+IV+NTC     A ++    + 
Sbjct: 3   KVGFVSLGCNKNLVDSEIMMGACVKAGFEITSNAEDADVIVVNTCGFINDAKQESIDTIL 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +   KN + K      ++V GC+ Q   +EIL + P V+ ++G +   +LPE++     
Sbjct: 63  DMAEYKNKKCK-----FLIVTGCLTQRYKDEILEQMPEVDAILGVKEMLKLPEVIRGLYE 117

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           GK+ +   +     F   S +       R   A++ I EGC+  C++C +P  RG   SR
Sbjct: 118 GKQKI-KMFDDATSFVYTSSMPRVIATPR-YYAYIKIAEGCNNRCSYCSIPLIRGKYTSR 175

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            +  +V EA++L   G  EI L  Q+     G  L G+K     LL  L +I+ +  +R+
Sbjct: 176 PIEDIVKEAKELAKKGYQEIVLTAQDTT-KYGLDLYGKKM-LPSLLEELEKIEKIKWIRF 233

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
             S+P D+ + LI+       ++ Y  +P+Q  +DRILK MNR+ T    +++I++IR  
Sbjct: 234 LYSYPEDVDENLIEVVKSSSKIVNYFDIPIQHINDRILKLMNRKTTKEGIKRLIEKIRRS 293

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
             ++ I +  +VGFP ETD++F      +    + +  +F YS   GTP S +  QVD+ 
Sbjct: 294 FDEVVIRTTVLVGFPTETDEEFEELCSFLRWAEFDRLGAFMYSQEEGTPASQLP-QVDDE 352

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQS--VV 439
           VK  R   +    R+     N   VG+  EV+IE   K     +GRS    P +    +V
Sbjct: 353 VKQRRYEKVLNIQRKISKKQNKKRVGREYEVVIEAKDK-NNFYIGRSQFEAPEVDGKVLV 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
            +      G  +KV+I D     L GE++
Sbjct: 412 FSQNKLTAGQFVKVKILDAFEYDLVGEII 440


>gi|225017551|ref|ZP_03706743.1| hypothetical protein CLOSTMETH_01478 [Clostridium methylpentosum
           DSM 5476]
 gi|224949701|gb|EEG30910.1| hypothetical protein CLOSTMETH_01478 [Clostridium methylpentosum
           DSM 5476]
          Length = 441

 Score =  394 bits (1013), Expect = e-107,   Method: Composition-based stats.
 Identities = 132/449 (29%), Positives = 214/449 (47%), Gaps = 17/449 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +  + S GC  N  D+  +       G+E    +  AD++V+NTC   E A ++    + 
Sbjct: 4   KVGMVSLGCPKNQVDAEMLLSNIKRDGFEITADVQQADVVVINTCGFIESAKQESIDSIL 63

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
               LK      G    VVV GC+A+   EE+ +  P V+VV+G  +   +   +  A  
Sbjct: 64  EFCALKEQ----GQLKCVVVTGCLAERYQEELAKEIPEVDVVLGIGSNAEIARAITDALD 119

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G++V D         + L++            A+L I EGCD  CT+C +P  RG   SR
Sbjct: 120 GRKVSDFADK-----QALALNGERVISTPSYFAYLKIAEGCDNNCTYCAIPAIRGPYRSR 174

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            L  +V+EA  L  +GV E+ ++ Q+     G  L GE     +LL  L +I G V +R 
Sbjct: 175 KLEDIVEEAEWLASSGVKELIVVAQDTT-RYGSDLYGELK-LPELLRRLCQIDGFVWIRV 232

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
              +P  ++D L+    +   +  Y+ +P+Q  +  +L+ M+RR T  E   ++ R+R  
Sbjct: 233 LYCYPEMVTDELLDVLAEEPKMAKYIDIPIQHINSAVLRRMHRRSTREEILSVVQRVRER 292

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P+I + +  I GFPGET + F   ++ V +  + +   F YS   GTP + + +Q+DE 
Sbjct: 293 VPNITLRTTLIAGFPGETKEQFEELVEFVKESKFDRLGCFAYSQEEGTPAAKLPDQLDEE 352

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVV-- 439
            KA R   +  + +      N A +G+I++VL+E    E    VGRS    P +  VV  
Sbjct: 353 TKARRAELVMLEQQTINEERNRAQLGKIVKVLVEGFDMETCCYVGRSEADAPDIDGVVLF 412

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
           ++ K  + GD  +V I D+    L G  V
Sbjct: 413 VSEKELSPGDFAEVEIIDILDYDLMGRAV 441


>gi|302804139|ref|XP_002983822.1| hypothetical protein SELMODRAFT_180500 [Selaginella moellendorffii]
 gi|300148659|gb|EFJ15318.1| hypothetical protein SELMODRAFT_180500 [Selaginella moellendorffii]
          Length = 469

 Score =  394 bits (1013), Expect = e-107,   Method: Composition-based stats.
 Identities = 154/459 (33%), Positives = 238/459 (51%), Gaps = 29/459 (6%)

Query: 36  MNVYDSLRMEDMFFSQGY-ERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSR 94
           MN  D   +  +    GY + V   +++D+I++NTC IR+ A  K++  L   +++K++ 
Sbjct: 1   MNFNDVEVVLAIMKKAGYGDIVQLPEESDVILINTCAIRDNAENKIWQRLNYFKHIKSNW 60

Query: 95  IKEG-----GDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149
            K G         V V GC+A+   E+++    +V+VV GP  Y  LP LL     G++ 
Sbjct: 61  RKNGTKSSRPPPKVAVLGCMAERLKEKLIEADKMVDVVCGPDAYRDLPRLLSSVEQGQQA 120

Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209
           ++T  S+E+ +  +S V      K  VTAF++I  GC+  C FC+VP+TRG E SR L  
Sbjct: 121 INTLLSLEETYADVSPVRIA---KDSVTAFVSIMRGCNNMCAFCIVPFTRGRERSRPLES 177

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRG-------KGLDGEKCTFSDLLYSLSEIKGLVR 262
           +V E  +L + GV E+TLLGQNVN++            +     F+ LL  L+E    +R
Sbjct: 178 IVREVGELWEQGVKEVTLLGQNVNSYCDLSGFSAIYRTNESGLRFASLLKCLAETYPEMR 237

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
            R+T+ HP+D  D L+    +   +   +HLPVQSGS R+L+ M R +T   Y ++++RI
Sbjct: 238 FRFTSPHPKDFPDDLLLVMREHHNVCNSIHLPVQSGSSRVLERMRRGYTREAYLELVERI 297

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML-EQ 381
           R + P +A+SSDFI GF GET++D   T+ +V+ +GY  A+ F YS R  TP      + 
Sbjct: 298 REIIPGVALSSDFIAGFCGETEEDHLQTLSIVETVGYEMAYMFAYSMREKTPAHRHDVDD 357

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVL 440
           V E VK  RL  L    +    +   + +G+   VLIE   K    +  GR    Q V  
Sbjct: 358 VPEEVKQRRLSELIATFKRSSAARYHSQLGKTQLVLIEAPNKRNPNEWGGRCDSGQKVFF 417

Query: 441 NSKNH-----------NIGDIIKVRITDVKISTLYGELV 468
           +                 GD + V+I D   ++L GE +
Sbjct: 418 SRAPVPDHQSGDLVDTKPGDYVAVKILDTTFASLRGEPL 456


>gi|169829242|ref|YP_001699400.1| hypothetical protein Bsph_3790 [Lysinibacillus sphaericus C3-41]
 gi|168993730|gb|ACA41270.1| UPF0004 protein [Lysinibacillus sphaericus C3-41]
          Length = 432

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 134/440 (30%), Positives = 231/440 (52%), Gaps = 22/440 (5%)

Query: 36  MNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRI 95
           MN Y++  +  +F  +GY+R      AD+ V+NTC +     +K    + R        I
Sbjct: 1   MNHYETEAIWQLFKDEGYDRTEFDQQADVYVINTCTVTNTGDKKSRQVIRRA-------I 53

Query: 96  KEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYS 155
           ++  D ++ V GC AQ    EI+   P V++VVG Q   +L   +++ R  ++ ++   +
Sbjct: 54  RQNPDAVICVTGCYAQTSPAEIMA-IPGVDIVVGTQDRTKLLGYIDQYRAERQPINAVRN 112

Query: 156 VEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           +     +E L +            A L IQEGC+ FCTFC++P+ RG+  SR   +V+ +
Sbjct: 113 IMKNRVYEELDVP----AFTDRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDPQEVLHQ 168

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKGLVRLRYTTSHPRD 272
           A++L+D G  EI L G +     G G D +    + LL  L + + GL RLR ++     
Sbjct: 169 AQQLVDAGYLEIVLTGIHTG---GYGQDLKDYNLAQLLRDLEANVTGLKRLRISSIEASQ 225

Query: 273 MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAIS 332
           ++D +I    +  +++ +LH+P+QSGSD +LK M R++T   + + + ++    PD+A++
Sbjct: 226 LTDEVIDVLRESKIVVNHLHIPIQSGSDTVLKRMRRKYTMEFFGERLTKLHEALPDLAVT 285

Query: 333 SDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLL 392
           SD IVGFPGET+++F  T + +    +++   F +SPR GTP + M +Q+DE++K ER+ 
Sbjct: 286 SDVIVGFPGETEEEFMDTYNFIRDHKFSELHVFPFSPRTGTPAARMEDQIDEDIKNERVH 345

Query: 393 CLQKKLREQQVSFNDACVGQIIEVLIEKH----GKEKGKLVGRSPWLQSVVLNSKNHNIG 448
            L     +    +      Q++EV+ E+      +E+G L G +     VV       IG
Sbjct: 346 RLISLNDQLAKEYASRFEDQVLEVIPEEFVHDGSEEEGLLTGYTDNYLKVVFEGPESLIG 405

Query: 449 DIIKVRITDVKISTLYGELV 468
            ++KV+IT        G+ V
Sbjct: 406 QLVKVKITQAGYPHSQGQFV 425


>gi|283954250|ref|ZP_06371774.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Campylobacter jejuni
           subsp. jejuni 414]
 gi|283794268|gb|EFC33013.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Campylobacter jejuni
           subsp. jejuni 414]
          Length = 433

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 154/446 (34%), Positives = 240/446 (53%), Gaps = 18/446 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ F+++ GC MNV DS  M       + Y    ++ +ADLI++NTC +REK   K++S 
Sbjct: 4   KKLFIQTLGCAMNVRDSEHMIAELTQKENYALTENIKEADLILINTCSVREKPVHKLFSE 63

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G    +K    K      + V GC A   G EI +R+P V+ V+G +   ++ + ++  
Sbjct: 64  VGSFEKVKKEGAK------IGVCGCTASHLGNEIFKRAPYVDFVLGARNISKITQAIKTP 117

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           +F    +D D S     +          R     +++ I  GCDK CT+C+VP+TRG EI
Sbjct: 118 KFMGVDIDYDESEFAFADF---------RNSIYKSYINISIGCDKHCTYCIVPHTRGDEI 168

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVR 262
           S   + +  EA+K ++ G  EI LLGQNVN +  +  +  +K  FSDLL  LS IK L R
Sbjct: 169 SIPFNIIYKEAQKAVEKGAKEIFLLGQNVNNYGKRFRNEHKKMDFSDLLEELSTIKDLER 228

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+T+ HP  M D  ++   +   +   +H+P+QSGS  ILK+M R +T   Y     ++
Sbjct: 229 IRFTSPHPLHMDDKFLEVFANNPKVCKSMHMPLQSGSSEILKAMKRGYTKEWYLNRALKL 288

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R + P++ IS+D IV FPGE++ DF  TMD+++K+ + Q FSFKYS R  T  + M  Q+
Sbjct: 289 RELCPNVNISTDIIVAFPGESEKDFEETMDVLEKVRFEQIFSFKYSKRPLTKAATMPNQI 348

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
           DE   + RL  LQ +  E           +I +VL E+  +    + GR+     V +  
Sbjct: 349 DEETASRRLKILQNRHSEILDEIVKKQENKIFKVLFEEL-RAGNAIAGRTDNNFLVQVEG 407

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
               +G   +V+IT+ K   LYGE+V
Sbjct: 408 SEELLGHFKEVKITNAKRMVLYGEIV 433


>gi|195107983|ref|XP_001998572.1| GI23564 [Drosophila mojavensis]
 gi|193915166|gb|EDW14033.1| GI23564 [Drosophila mojavensis]
          Length = 588

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 155/476 (32%), Positives = 246/476 (51%), Gaps = 38/476 (7%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +R   + YGCQMN  D+  +  +    GY+R   + ++D+++L TC +RE A +K+++ L
Sbjct: 101 RRVHFEVYGCQMNTNDTEVVWSILKEHGYQRSEDVANSDVVMLVTCAVREGAEQKIWNRL 160

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             +R LK  R  +   L + + GC+A+   E++L +   V+V+ GP +Y  LP LL  AR
Sbjct: 161 RHLRALKEKRGSKRAPLQLTILGCMAERLKEKLLEQEQCVDVIAGPDSYKDLPRLLAVAR 220

Query: 145 F-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             G   ++   S+++ +  +  V    +     TAF++I  GCD  CT+C+VP+TRG E 
Sbjct: 221 HYGNSAINVLLSLDETYADVMPVRLNSH---SPTAFVSIMRGCDNMCTYCIVPFTRGRER 277

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT----------------- 246
           SR L  +V E R L + GV E+TLLGQNVN++R +  +                      
Sbjct: 278 SRPLDSIVHEVRTLQEQGVKEVTLLGQNVNSYRDRTSENSTKAAGNTAPGFSTVYKPKTG 337

Query: 247 ---FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
              FS LL S++E    +R+R+T+ HP+D SD +++   D   +   LHLP QSG+  +L
Sbjct: 338 GLPFSVLLQSVAEAVPEMRIRFTSPHPKDFSDEVLRVIRDYPNVCKQLHLPAQSGNSAVL 397

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
             M R +T   Y Q+++ IR + P++ +SSDFI GF GET+ +F  T+ L++ + Y  AF
Sbjct: 398 ARMRRGYTREAYLQLVEHIRQILPNVGLSSDFICGFCGETEAEFEDTISLIEIVQYNVAF 457

Query: 364 SFKYSPRLGTPGSNM-LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422
            F YS R  T      ++ V   VK +RL  + +  RE     +    GQ   +LIE   
Sbjct: 458 LFAYSMREKTTAHRRCVDDVPTAVKTDRLKRMVQAFREGATKLHKRFEGQEQLILIEGKS 517

Query: 423 KE-KGKLVGRSPWLQSVVLN------------SKNHNIGDIIKVRITDVKISTLYG 465
           K       GR+     V++             +K+ N+GD +  RI +     L G
Sbjct: 518 KRSDSHWFGRNDANIKVIVPAAALRTANANESAKDINVGDFVVARIVESNSQVLKG 573


>gi|297584652|ref|YP_003700432.1| RNA modification enzyme, MiaB family [Bacillus selenitireducens
           MLS10]
 gi|297143109|gb|ADH99866.1| RNA modification enzyme, MiaB family [Bacillus selenitireducens
           MLS10]
          Length = 441

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 143/450 (31%), Positives = 241/450 (53%), Gaps = 19/450 (4%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           +P +    + GC++N Y++  +  +F ++GYE+      AD+ V+NTC +     +K   
Sbjct: 1   MP-KVAFHTLGCKVNHYETEAIWQLFQAEGYEKEAFDQLADVYVINTCTVTNTGDKKSRQ 59

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            + R        I++  D +V V GC AQ    E++   P V++VVG Q  ++L   ++ 
Sbjct: 60  VIRRA-------IRKNPDAVVCVTGCYAQTSPAEVMA-IPGVDIVVGTQDRHKLIPYIKE 111

Query: 143 ARFGKRVVDTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
            +  +  V+   ++     +E L +            A L IQEGC+ FCTFC++P+ RG
Sbjct: 112 FQVSREPVNGVGNIMKARVYEELDVP----AFTDRTRASLKIQEGCNNFCTFCIIPWARG 167

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
           +  SR    V+ +A +L++ G  EI L G +     G G D +    + LL  L  I+GL
Sbjct: 168 LMRSRKPEDVLSQANQLVEAGYKEIVLTGIHTG---GYGEDMKDYNLAGLLRDLETIEGL 224

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R ++     ++D +I+     D ++ +LH+P+QSGSD +LK M R++T   YR+ ++
Sbjct: 225 RRIRISSIEASQITDEVIEVINRSDKVVNHLHIPLQSGSDTVLKRMRRKYTTSFYRERVE 284

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           R++   P +A++SD IVGFPGETD++F  T  L+  IGY++   F +S R GTP + M E
Sbjct: 285 RLKEALPGLAVTSDVIVGFPGETDEEFEETYQLIRDIGYSELHVFPFSKRTGTPAARMDE 344

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRSPWLQSVV 439
           QVD+ +K ER+  L     +Q   +  +  G+I+E++ E+   +   +LVG +     V 
Sbjct: 345 QVDDGIKNERVHRLIALSDQQAKEYASSYEGEIVEMIPEERDADHPERLVGYTDNYLKVA 404

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELVV 469
           +  ++  IG+I+KVRI         G  V 
Sbjct: 405 VELEDSYIGEIVKVRIEQAGYPMNQGRFVA 434


>gi|291543948|emb|CBL17057.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Ruminococcus sp. 18P13]
          Length = 455

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 153/443 (34%), Positives = 237/443 (53%), Gaps = 14/443 (3%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V+S+GCQ+N+ D  +++ +  S GY      + ADLI+LNTC +RE A ++V+  LG+++
Sbjct: 23  VQSFGCQLNMTDGEKLKWLLLSMGYGLTEEPEQADLILLNTCAVREHAEDRVFGHLGQLK 82

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
             K         L++ + GC+   E   E++    P VN+VVG     RLP +L     G
Sbjct: 83  PYKQK----KPGLIIGLCGCMTAEEPVREKLKASYPYVNLVVGTGALERLPAMLLEILGG 138

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           K+     +SV+   +     +    R     A + I  GC+ FCT+C+VPY RG E SR 
Sbjct: 139 KK-----HSVDATVQSAPSEELSQVRSCSFKASVPIMYGCNNFCTYCIVPYVRGRERSRD 193

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
              +  + R+L+  G  EI LLGQNVN+  GK L  +   F +LL  L  I+G   +R+ 
Sbjct: 194 PKIIERQVRELVSQGCKEIFLLGQNVNS-YGKDLP-DGIRFPELLRRLDAIEGEYWIRFM 251

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
           +SHP+D +  LI    +   +  +LHLPVQSGSD IL +MNR +T  +Y + +   RS  
Sbjct: 252 SSHPKDATPELIDVICNSRHVEKHLHLPVQSGSDSILHAMNRCYTVKKYLETVRYARSRV 311

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           PD A+++D IVGFP ETD++F AT+ L++++G+   +SF YSPR GT  + + +     V
Sbjct: 312 PDFALTTDIIVGFPNETDEEFSATLGLLEQVGFDNVYSFIYSPRSGTKAAQIADHTPAQV 371

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRSPWLQSVVLNSKNH 445
           K  R+  L  + RE         +G+ ++VL E   ++ +  L G+S     V       
Sbjct: 372 KTVRMQQLLAQQRETSTRLYRRFLGRTMQVLFEGVSRKGEPWLTGKSTEGVIVEAKGDPS 431

Query: 446 NIGDIIKVRITDVKISTLYGELV 468
            IG    V I + K   + G ++
Sbjct: 432 RIGTFADVHIEETKNWAVLGTIL 454


>gi|271500868|ref|YP_003333893.1| MiaB-like tRNA modifying enzyme YliG [Dickeya dadantii Ech586]
 gi|270344423|gb|ACZ77188.1| MiaB-like tRNA modifying enzyme YliG [Dickeya dadantii Ech586]
          Length = 467

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 136/456 (29%), Positives = 222/456 (48%), Gaps = 34/456 (7%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++    S GC  N+ DS R+     ++GY+ V S +DADL+++NTC   + A ++    +
Sbjct: 34  RKIGFVSLGCPKNLVDSERILTELRTEGYQVVPSYNDADLVIVNTCGFIDSAVQESLEAI 93

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           G              +  V+V GC+  A+  +I    P V  + GP +Y ++   +    
Sbjct: 94  GEA---------LNENGKVIVTGCLG-AKENQIREVHPKVLEITGPHSYEQVLSHVHHY- 142

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
                        D F  L    G     R   A+L I EGCD  CTFC++P  RG   S
Sbjct: 143 -------VPKPEHDPFTSLIPAQGVKLTPRHY-AYLKISEGCDHRCTFCIIPSMRGDLDS 194

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNA------WRGKGLDGE--KCTFSDLLYSLSE 256
           R +  V+DEA++L + GV E+ ++ Q+ +A       R    +G+  K +   L   LS 
Sbjct: 195 RPIGSVLDEAKRLAEAGVKELLVISQDTSAYGADVKHRTGFWNGQPVKTSMVSLCEQLST 254

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           +   VRL Y   +P       + A G    ++PYL +P+Q  S +ILK M R        
Sbjct: 255 LGLWVRLHYVYPYPHVDDVIPLMAAG---KVLPYLDIPLQHASPKILKLMKRPGAVERTL 311

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
           + I R R + PD+ + S FIVGFPGET++DF+  +D + +    +   F+YSP  G   +
Sbjct: 312 ERIKRWREICPDLTLRSTFIVGFPGETEEDFQMLLDFLQEAQLDRVGCFRYSPVEGAAAN 371

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPW 434
           ++ +QV E+VK +R     +  ++       A VG+ ++VLI++  +E   G+ +  +P 
Sbjct: 372 DLPDQVPEDVKEDRYHRFMQVQQQISSQRLLAKVGRELKVLIDEVDEEGAIGRSMADAPE 431

Query: 435 LQS-VVLNSKN-HNIGDIIKVRITDVKISTLYGELV 468
           +   V LN +N   +GD++ V+I       L+G LV
Sbjct: 432 IDGAVYLNGENRVKVGDLVTVKIEHADEYDLWGSLV 467


>gi|251790001|ref|YP_003004722.1| ribosomal protein S12 methylthiotransferase [Dickeya zeae Ech1591]
 gi|247538622|gb|ACT07243.1| MiaB-like tRNA modifying enzyme YliG [Dickeya zeae Ech1591]
          Length = 467

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 132/456 (28%), Positives = 220/456 (48%), Gaps = 34/456 (7%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++    S GC  N+ DS R+     ++GY+ V S +DADL+++NTC   + A ++    +
Sbjct: 34  RKIGFVSLGCPKNLVDSERILTELRTEGYQVVPSYNDADLVIVNTCGFIDSAVQESLEAI 93

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           G              +  V+V GC+  A+  +I    P V  + GP +Y ++ + +    
Sbjct: 94  GEA---------LNENGKVIVTGCLG-AKENQIREVHPKVLEITGPHSYEQVLKHVHHY- 142

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
                        D F  L    G     R   A+L I EGCD  CTFC++P  RG   S
Sbjct: 143 -------VPKPEHDPFTSLIPAQGVKLTPRHY-AYLKISEGCDHRCTFCIIPSMRGDLDS 194

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNA------WRGKGLDGE--KCTFSDLLYSLSE 256
           R +  V+DEA++L + GV E+ ++ Q+ +A       R    +G+  K +   L   L+ 
Sbjct: 195 RPIGSVLDEAKRLAEAGVKELLVISQDTSAYGADVKHRTGFWNGQPVKTSMVSLCEQLAT 254

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           +   VRL Y   +P       + A G    ++PYL +P+Q  S ++LK M R        
Sbjct: 255 LGMWVRLHYVYPYPHVDDVIPLMAAG---KVLPYLDIPLQHASPKVLKLMKRPGAVERTL 311

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
           + I R R + PD+ + S FIVGFPGET++DF+  +D + +    +   F+YSP  G   +
Sbjct: 312 ERIKRWREICPDLTLRSTFIVGFPGETEEDFQMLLDFLQEAQLDRVGCFRYSPVEGAAAN 371

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPW 434
           ++ + V E+VK +R     +  ++       A VG+ ++VLI++   E   G+ +  +P 
Sbjct: 372 DLPDHVPEDVKEDRYHRFMQVQQQISSQRLQAKVGRELKVLIDEVDDEGAIGRSMADAPE 431

Query: 435 LQS-VVLNSKN-HNIGDIIKVRITDVKISTLYGELV 468
           +   V LN +    +GD++ V+I       L+G LV
Sbjct: 432 IDGAVYLNGEKRVKVGDLVTVKIEHADEYDLWGSLV 467


>gi|240144123|ref|ZP_04742724.1| RNA modification enzyme, MiaB family [Roseburia intestinalis L1-82]
 gi|257203915|gb|EEV02200.1| RNA modification enzyme, MiaB family [Roseburia intestinalis L1-82]
 gi|291536225|emb|CBL09337.1| SSU ribosomal protein S12P methylthiotransferase [Roseburia
           intestinalis M50/1]
          Length = 444

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 135/450 (30%), Positives = 219/450 (48%), Gaps = 18/450 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC  N+ D+  M  M    G E  +   +AD+I++NTC     A E+  + + 
Sbjct: 6   KLLFVSLGCDKNLVDTEFMLGMLRDDGIEMTDDEQEADIIIVNTCCFINDAKEESINTIL 65

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +  LK    KE     ++V GC+AQ   EEI++  P V+ ++G  +Y  +   + ++  
Sbjct: 66  EMAELK----KEARLKSLIVTGCLAQRYKEEIVKEIPEVDAILGTNSYEDIVNAVHQSLE 121

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYN-RKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
           GK      Y      E L  +    +    G  A+L I EGC+K CT+C++PY RG   S
Sbjct: 122 GKH-----YENFKTLEGLPTLHTKRSVTTGGHFAYLKIAEGCNKRCTYCIIPYIRGNYRS 176

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
             +  ++++A++L+  G  E+ L+ Q      G  L GEK +   LL  L++IK L  +R
Sbjct: 177 VPMEDLIEQAKELVAAGAKELILVAQETT-LYGVDLYGEK-SLHRLLDELNKIKDLFWIR 234

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
               +P ++ + LI A      +  YL +P+Q  +D ILK M RR +  +  +II  +R 
Sbjct: 235 IMYCYPEEIYEGLIDAMIRNQKVCHYLDIPIQHANDTILKRMGRRTSNADLVKIITHLRE 294

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             PDI + +  I GFPGET +     M  ++ + + +  +F YSP  GTP +   +QVDE
Sbjct: 295 RIPDITLRTTLICGFPGETQEMHEELMQFINDMEFDRLGAFTYSPEEGTPAAEFTDQVDE 354

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVL 440
           N+K +    + +   E     N+   G+ + V IE    ++   VGR+    P +   + 
Sbjct: 355 NLKKDWQADVMELQEEIIFDKNETMKGRELYVFIEGKVSDENAYVGRTYRDAPDVDGYIF 414

Query: 441 --NSKNHNIGDIIKVRITDVKISTLYGELV 468
               +    GDI KVR+T      L GEL+
Sbjct: 415 INTDEELMTGDIAKVRVTGAYEYDLIGELI 444


>gi|168335412|ref|ZP_02693503.1| MiaB-like tRNA modifying enzyme YliG [Epulopiscium sp. 'N.t.
           morphotype B']
          Length = 446

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 138/453 (30%), Positives = 223/453 (49%), Gaps = 19/453 (4%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           +       S GC  N+ DS  M  +    G+  ++  D AD+I++NTC   + A ++   
Sbjct: 1   MANTVTFLSLGCDKNLVDSEHMLGLLNEGGFVLISEEDKADVIIVNTCCFIDDAKQESID 60

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +  +   K    K G    ++V GC+A+    E+L   P V+ VVG  +Y +   ++  
Sbjct: 61  SILEVAQYK----KTGNCKALIVTGCMAERYKTELLEEMPEVDAVVGTTSYDK---IVHI 113

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           AR      +     ED                G  A++ I EGC+  CT+C++P  RG  
Sbjct: 114 ARNVLDQNEVKQHFEDVNRPHLENMPRVLTTGGYFAYIKIAEGCNSHCTYCIIPSLRGQY 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR   ++V+E  +L ++GV EI L+ QN     G     +  T ++LL  LS+I G+  
Sbjct: 174 RSRPKEKIVEEVMQLAEDGVSEIILVAQNTTM-YGID---KGYTLTNLLQELSDIDGIEW 229

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R    +P +++D LI+       +  YL +P+Q  SD+ILK MNR+ +    +Q+I ++
Sbjct: 230 IRILYCYPENITDELIEEIKVNSKVCKYLDIPIQHSSDQILKRMNRKSSNAFLKQLIQKL 289

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R   P+I I S  IVGFPGET++DF   +D V +    +   F YS   GTP + +  Q+
Sbjct: 290 RDNIPNIMIRSTLIVGFPGETEEDFNNLIDFVKETKLDRLGVFTYSQEEGTPAAKLANQI 349

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
           DE++K  R   + K  +E         VG+I  VLIE   +++   +GR+ +  + V++S
Sbjct: 350 DEHIKESRKNTIMKIQQEISKQICATKVGKIFRVLIEGKLEKEDVYIGRT-YGDAPVVDS 408

Query: 443 K-------NHNIGDIIKVRITDVKISTLYGELV 468
           K       +   GD I V+IT      L GE+V
Sbjct: 409 KVFVEYEGDLMCGDFISVKITQADEYDLIGEVV 441


>gi|282850176|ref|ZP_06259555.1| MiaB-like protein [Veillonella parvula ATCC 17745]
 gi|294791828|ref|ZP_06756976.1| Fe-S oxidoreductase [Veillonella sp. 6_1_27]
 gi|294793689|ref|ZP_06758826.1| Fe-S oxidoreductase [Veillonella sp. 3_1_44]
 gi|282579669|gb|EFB85073.1| MiaB-like protein [Veillonella parvula ATCC 17745]
 gi|294455259|gb|EFG23631.1| Fe-S oxidoreductase [Veillonella sp. 3_1_44]
 gi|294457058|gb|EFG25420.1| Fe-S oxidoreductase [Veillonella sp. 6_1_27]
          Length = 431

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 143/443 (32%), Positives = 242/443 (54%), Gaps = 18/443 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +     + GC++N YD+  M+ +F    YE V+  + AD+ V+NTC +     +K    +
Sbjct: 2   KTVAFTTLGCRVNQYDTDAMKGLFLQNNYEAVDFDEKADIYVINTCSVTNMGEKKSRQLI 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            + +       ++  D  V+V GC AQ + + I      VN+V+G     ++ EL+E+  
Sbjct: 62  RKAK-------RQNEDAYVIVTGCYAQLDPDAIAA-IDGVNLVIGTNNRSKIVELVEQLE 113

Query: 145 FGKRVVDT--DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
             +R ++   D   E  FE + +     ++ R   AF+ IQEGC+ +C FC++PYTRG  
Sbjct: 114 STERQINAVRDIMKESNFEEMPLYGNESDKAR---AFMKIQEGCNNYCAFCIIPYTRGKL 170

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR +  +V EA++L+D+G  EI L G ++    G  L G + T +D++ +L EI  L R
Sbjct: 171 KSRKVDDIVQEAKRLVDHGFHEIVLTGIHLG-NYGVELPG-RPTLADVVKALLEIPNLYR 228

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+ +    ++SD L++       + P+LHLP+Q+GSD +LK M R +T  EY+ +I  +
Sbjct: 229 IRFGSIESVEVSDELVELMATNKRVCPHLHLPLQAGSDHVLKLMKRHYTLQEYKDLITSL 288

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           RS   D++I++D I GFP ETD+DF  T++ V +IG+    +F YS R GTP + M +QV
Sbjct: 289 RSRIKDLSITTDIIAGFPQETDEDFEETLNTVREIGFTHIHAFPYSIREGTPAATMADQV 348

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS-PWLQSVVLN 441
            E VK  R+  L    +     +  + +G+  E+LIEK  +E G  +G +  ++   V +
Sbjct: 349 PEAVKKTRVALLNGLSQSGYERYAKSRIGKPGEILIEK--EENGYYMGLTNEYINGKVKS 406

Query: 442 SKNHNIGDIIKVRITDVKISTLY 464
                IGD++   +  ++ + L 
Sbjct: 407 DGTRKIGDLVGGTVVGLEDNYLI 429


>gi|291538907|emb|CBL12018.1| SSU ribosomal protein S12P methylthiotransferase [Roseburia
           intestinalis XB6B4]
          Length = 444

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 134/450 (29%), Positives = 219/450 (48%), Gaps = 18/450 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC  N+ D+  M  M    G E  +   +AD+I++NTC     A E+  + + 
Sbjct: 6   KLLFVSLGCDKNLVDTEFMLGMLRDDGIEMTDDEQEADIIIVNTCCFINDAKEESINTIL 65

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +  LK    KE     ++V GC+AQ   EEI++  P V+ ++G  +Y  +   + ++  
Sbjct: 66  EMAELK----KEARLKSLIVTGCLAQRYKEEIVKEIPEVDAILGTNSYEDIVNAVHQSLE 121

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYN-RKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
           GK      Y      E L  +    +    G  A+L I EGC+K CT+C++PY RG   S
Sbjct: 122 GKH-----YENFKTLEGLPTLHTKRSVTTGGHFAYLKIAEGCNKRCTYCIIPYIRGNYRS 176

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
             +  ++++A++L+  G  E+ L+ Q      G  L GEK +   LL  L++I+ L  +R
Sbjct: 177 VPMEDLIEQAKELVAAGAKELILVAQETT-LYGVDLYGEK-SLHRLLDELNKIEDLFWIR 234

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
               +P ++ + LI A      +  YL +P+Q  +D ILK M RR +  +  +II  +R 
Sbjct: 235 IMYCYPEEIYEGLIDAMIRNQKVCHYLDIPIQHANDTILKRMGRRTSNADLVKIITHLRE 294

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             PDI + +  I GFPGET +     M  ++ + + +  +F YSP  GTP +   +QVDE
Sbjct: 295 RIPDITLRTTLICGFPGETQEMHEELMQFINDMEFDRLGAFTYSPEEGTPAAEFTDQVDE 354

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVL 440
           N+K +    + +   E     N+   G+ + V IE    ++   VGR+    P +   + 
Sbjct: 355 NLKKDWQADVMELQEEIIFDKNETMKGRELYVFIEGKVSDENAYVGRTYRDAPDVDGYIF 414

Query: 441 --NSKNHNIGDIIKVRITDVKISTLYGELV 468
               +    GDI KVR+T      L GEL+
Sbjct: 415 INTDEELMTGDIAKVRVTGAYEYDLIGELI 444


>gi|312878039|ref|ZP_07737977.1| MiaB-like tRNA modifying enzyme YliG [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311795191|gb|EFR11582.1| MiaB-like tRNA modifying enzyme YliG [Caldicellulosiruptor
           lactoaceticus 6A]
          Length = 440

 Score =  393 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 133/449 (29%), Positives = 218/449 (48%), Gaps = 17/449 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC  N+ DS  M       G+E  ++ +DAD+IV+NTC     A ++    + 
Sbjct: 3   KVGFVSLGCNKNLVDSEIMMGACVKAGFEITSNAEDADVIVVNTCGFINDAKQESIDTIL 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +   KN + K      ++V GC+ Q   +EIL + P V+ ++G +   +LPE++     
Sbjct: 63  DMAEYKNKKCK-----FLIVTGCLTQRYKDEILEQMPEVDAILGVKEMLKLPEVIRGLYE 117

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           GK+ +   +     F   S +       R   A++ I EGC+  C++C +P  RG   SR
Sbjct: 118 GKQKI-KMFDDATSFVYTSSMPRVIATPR-YYAYIKIAEGCNNRCSYCSIPLIRGKYTSR 175

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            +  +V EA +L + G  EI L  Q+     G  L G+K     LL  L +I+ +  +R+
Sbjct: 176 PIEDIVKEAEELAEKGYQEIVLTAQDTT-KYGLDLYGKKM-LPSLLEELEKIEKIKWIRF 233

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
             S+P D+ + LI+       ++ Y  +P+Q  +DRILK MNR+ T    +++I++IR  
Sbjct: 234 LYSYPEDVDENLIEVVKSSSKIVNYFDIPIQHINDRILKLMNRKTTKEGIKRLIEKIRRS 293

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
             ++ I +  +VGFP ETD++F      +    + +  +F YS   GTP S +  QVD+ 
Sbjct: 294 FDEVVIRTTVLVGFPTETDEEFEELCSFLRWAEFDRLGAFMYSQEEGTPASQLP-QVDDE 352

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQS--VV 439
           VK  R   +    R+     N   VG+  EV+IE   K     +GRS    P +    +V
Sbjct: 353 VKQRRYEKVLNIQRKISKKQNKKRVGREYEVVIEAKDK-NNFYIGRSQFEAPEVDGKVLV 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
            +      G  +KV+I D     L GE++
Sbjct: 412 FSQNKLTAGQFVKVKILDAFEYDLVGEII 440


>gi|222529273|ref|YP_002573155.1| MiaB family RNA modification enzyme [Caldicellulosiruptor bescii
           DSM 6725]
 gi|222456120|gb|ACM60382.1| RNA modification enzyme, MiaB family [Caldicellulosiruptor bescii
           DSM 6725]
          Length = 434

 Score =  393 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 145/447 (32%), Positives = 244/447 (54%), Gaps = 19/447 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    + GC++N Y++  + ++F   G+E V+    AD+ V+NTC +   +  K    + 
Sbjct: 2   KIAFYTLGCKVNQYETQAVAELFKESGFEIVDFDSKADVYVINTCTVTNISDRKSRQAIK 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           + + L           +VVV GC  Q   +E+  +   V++++G +   ++ + + +   
Sbjct: 62  KAKKL-------SPQSIVVVMGCYPQVYPQEV-EKIEDVDIIIGTKDRQKIVDYVRQYLE 113

Query: 146 GKR---VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            K+    ++ DY  E  FE L I +     +    AF+ I+EGCD+FC++C++PY RG  
Sbjct: 114 DKKKIVAINEDYKRE-AFEELKISEFNERSR----AFIKIEEGCDQFCSYCIIPYARGAV 168

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SRSL  + +E  +L+  G  E  + G N+++  GK LD EK T  D++  +++I+G+ R
Sbjct: 169 RSRSLKSIEEEVIRLVQKGYKEFVITGINISS-YGKDLD-EKVTLIDVIERVNKIEGVKR 226

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R ++  P  M+   I+     D L  +LHL +QSGSD+ILK MNR +T  +Y+ I+DRI
Sbjct: 227 IRLSSLEPVIMNGEFIERLLSFDKLCHHLHLSLQSGSDKILKLMNRHYTTAQYQSIVDRI 286

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R    D+A ++D IVGFPGET++DF AT+D V KIG+++   F++SP+ GT    M  QV
Sbjct: 287 REKWDDVAFTTDIIVGFPGETEEDFNATLDFVQKIGFSRIHVFRFSPKKGTKAYEMPNQV 346

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
           D   K  R   +++        F+   VG+ +EVLIE+     G   G S      ++  
Sbjct: 347 DSKEKERRSKIMKEVAASLSYQFHSKFVGKTLEVLIEQDSDFDGYYEGYSGNYIRTLIRK 406

Query: 443 KNHNI-GDIIKVRITDVKISTLYGELV 468
            +  + G+I KV+IT      + GE++
Sbjct: 407 SHMIVHGEIYKVKITQAYRQYVKGEII 433


>gi|22299107|ref|NP_682354.1| hypothetical protein tlr1564 [Thermosynechococcus elongatus BP-1]
 gi|81844879|sp|Q8DIL8|RIMO_THEEB RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|22295289|dbj|BAC09116.1| tlr1564 [Thermosynechococcus elongatus BP-1]
          Length = 446

 Score =  393 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 131/444 (29%), Positives = 205/444 (46%), Gaps = 19/444 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +      GC  N  D+  M  +  + GY       +AD +++NTC   + A E+    L 
Sbjct: 8   KIAFAHLGCDKNRVDTEHMIGLLAAAGYGVGTDETEADYVIVNTCSFIQAAREESVRTLV 67

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +               +V+ GC+AQ    E+L   P    VVG   Y  + E++ER   
Sbjct: 68  ELAEANKK---------IVITGCLAQHFQGELLAELPEAVAVVGSGDYQHIVEVIERVER 118

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G+RV           +        Y       A+L I EGCD  C FC++P+ RG + SR
Sbjct: 119 GERVQQISAVPTYIADETVP---RYRTTPAPVAYLRIAEGCDYRCAFCIIPHLRGNQRSR 175

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           SL  +V EA +L   GV EI ++ Q +    G    G+    + L+ +L E+  +  +R 
Sbjct: 176 SLESIVSEAHQLAAEGVQEIIIVSQ-ITTNYGLDRYGQPQ-LATLIRALGEVD-VPWIRL 232

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
             ++P  ++  +I A  +   ++PYL LP+Q     +L++MNR   A    ++I+R+R  
Sbjct: 233 HYAYPTGLTPEVIAAMRETPNILPYLDLPLQHSHPEVLRAMNRPWQAGVNDRLIERLRQE 292

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P+  + + FIVGFPGET+  F      V +  +     F YSP  GT   ++  Q+ E 
Sbjct: 293 LPEAVVRTTFIVGFPGETESQFEHLCQFVQRHEFDHVGVFTYSPEEGTAAYDLPHQIPEE 352

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVLN 441
           +K  R   L +  +      N A VG+I+ VLIE+   + G+ +GRS    P +  VV  
Sbjct: 353 IKRARRDRLMELQQPIAQRKNAAEVGKIVPVLIEQENPQTGEFIGRSPRFAPEVDGVVYV 412

Query: 442 SKNHNIGDIIKVRITDVKISTLYG 465
                +G I+ V IT   I  LYG
Sbjct: 413 KGAATLGTIVPVEITAADIYDLYG 436


>gi|291533186|emb|CBL06299.1| SSU ribosomal protein S12P methylthiotransferase [Megamonas
           hypermegale ART12/1]
          Length = 446

 Score =  393 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 127/449 (28%), Positives = 209/449 (46%), Gaps = 13/449 (2%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC  N+ D+  M  +      E       AD++++NTC   + A E+  + + 
Sbjct: 3   KAGFISLGCSKNLVDTEVMLGILAKNNIEITAEPAKADILIVNTCTFIQSAKEESITTIL 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +   K      G    +++AGC+ Q  G+E+L   P V+ +VG   + R+ E +E    
Sbjct: 63  NMAEYKQEGK--GKCRSLIIAGCMGQRYGQELLEEFPEVDAIVGTGAWSRIMEAVEATIQ 120

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            ++ V      ++ +  L+            +A++ I EGC+  C +C +PY RG   SR
Sbjct: 121 ERKRVLITGESKEIYTALTPRIFTTPF---YSAYIKIAEGCNHRCAYCAIPYVRGNYRSR 177

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           ++  +  E   L + GV E  ++ Q+   + G+ + G K +  +LL  L +I+ +  LR 
Sbjct: 178 TIEDIKQEVEALAEKGVKEFNIIAQDTT-YYGRDIYG-KPSLVELLKELVKIEKVKWLRI 235

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
             ++P   +D LI      D +  Y+ LP+Q   + +LK M R  T      ++ ++R  
Sbjct: 236 QYAYPHTFTDELIDLIASEDKICNYVDLPLQHAHNDVLKRMRRSDTKESVEALLAKLRER 295

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P + I S FIVGFPGETD  +    + V+K  + +   F YS   GTP  +M  QVDEN
Sbjct: 296 IPGVVIRSSFIVGFPGETDSQYTTLRNFVEKQRFDKVGIFSYSREEGTPAYDMPNQVDEN 355

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVLN 441
           +  ER   L     +   + N    G++++VLIE    E+    GRS    P +   V  
Sbjct: 356 IMQERYHDLMSLQSKISETINIEMEGKVLDVLIEGRDDEQHMAYGRSYREAPDVDGQVFI 415

Query: 442 SKNH--NIGDIIKVRITDVKISTLYGELV 468
             +     GDI+KVRI       + GE V
Sbjct: 416 EGDDISQPGDIVKVRILQGFDYDVVGERV 444


>gi|258516358|ref|YP_003192580.1| RNA modification enzyme, MiaB family [Desulfotomaculum acetoxidans
           DSM 771]
 gi|257780063|gb|ACV63957.1| RNA modification enzyme, MiaB family [Desulfotomaculum acetoxidans
           DSM 771]
          Length = 435

 Score =  393 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 136/448 (30%), Positives = 225/448 (50%), Gaps = 14/448 (3%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           +  +   V + GC++N Y++  +  +F S+GY  V+  + A + V+NTC +   +  K  
Sbjct: 1   MKSKTVAVATLGCKVNQYEAAAIVSLFRSKGYSEVDFTEPAGVYVINTCTVTHLSDRKSR 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             + R        ++   + ++ V GC AQ    E++   P V++VVG     ++ +L+E
Sbjct: 61  QLIRRA-------VRTNPEAVIAVTGCYAQTSPGELMS-LPEVDLVVGTSDRDKIVDLVE 112

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
            +   +++       +  F        G  R R   A+L IQEGC  FC++C++PY RG 
Sbjct: 113 ASSKAEKINAVADIEKACFYEELPAPAGQGRVR---AYLKIQEGCRNFCSYCIIPYARGP 169

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
             SR    V++EA  L+  G  EI L G    A  G  L   K + + ++  L  I GL 
Sbjct: 170 LRSRQPEAVLNEAESLLAAGFKEIVLTGIQTGA-YGVDLP-AKTSLAAIVEKLLRISGLS 227

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           RLR ++  P D+S  LI+      +  P+LH+P+QSGSDR+LK M RR+T   Y +I++ 
Sbjct: 228 RLRLSSIEPNDLSPELIELILHSKIFCPHLHIPLQSGSDRVLKLMRRRYTTEGYAKILNN 287

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R   P++A+++D + GFPGET++DF   +  +  + ++    FKYSPR GTP +   +Q
Sbjct: 288 LREKMPNLAVTTDIMAGFPGETEEDFEQALGFIKDMAFSGMHVFKYSPRRGTPAAGFPQQ 347

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKH-GKEKGKLVGRSPWLQSVVL 440
           VD  VK +R   L     +   ++     G  + VL E+      G   G +P    VV 
Sbjct: 348 VDARVKEQRSRRLIALGEQLTENYASKFAGLTLPVLAEQPFSGRGGCWEGLTPNYLRVVF 407

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
               +  G+II ++I    I    G ++
Sbjct: 408 ACLENLSGEIIDIKIEKTGIQYQTGIII 435


>gi|258621980|ref|ZP_05717009.1| conserved hypothetical protein [Vibrio mimicus VM573]
 gi|258585733|gb|EEW10453.1| conserved hypothetical protein [Vibrio mimicus VM573]
          Length = 383

 Score =  393 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 177/386 (45%), Positives = 252/386 (65%), Gaps = 11/386 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++  +K++GCQMN YDS +M D+   + GYE     ++AD+++LNTC IREKA EKV+
Sbjct: 1   MSKKLLIKTWGCQMNEYDSSKMADLLNAANGYELTEIPEEADVLLLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR + LK+ +      +   V    A  EG+ I  R+P V+V+ GPQT +RLPE+++
Sbjct: 61  HQLGRWKTLKDKKPGVVIGVGGCV----ATQEGDSIRDRAPYVDVIFGPQTLHRLPEMIK 116

Query: 142 RARFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           +++  +  V+D  +   +KF+RL        R  G TAF++I EGC K+CT+CVVPYTRG
Sbjct: 117 QSQISEAPVMDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCSKYCTYCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR +  V+ E  +L + GV E+ LLGQNVNA+RG   DGE C+F++LL  ++ I G+
Sbjct: 172 EEVSRPMDDVLFEIAQLAEQGVREVNLLGQNVNAYRGATHDGEICSFAELLRLVATIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+TTSHP + +D +I  + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II 
Sbjct: 232 DRIRFTTSHPLEFTDDIIAVYEDTPELVSFLHLPVQSGSDRILTMMKRPHTAIEYKSIIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R  RPDI ISSDFIVGFPGETD DF+ TM L+  + +  +FSF +SPR GTP ++   
Sbjct: 292 KLRKARPDIQISSDFIVGFPGETDKDFQDTMKLIRDVDFDMSFSFIFSPRPGTPAADYPC 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFN 406
            + E VK ERL  L    ++   +  
Sbjct: 352 DLSEEVKKERLYELAAADQQSSHALL 377


>gi|167750510|ref|ZP_02422637.1| hypothetical protein EUBSIR_01486 [Eubacterium siraeum DSM 15702]
 gi|167656436|gb|EDS00566.1| hypothetical protein EUBSIR_01486 [Eubacterium siraeum DSM 15702]
          Length = 486

 Score =  393 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 155/445 (34%), Positives = 234/445 (52%), Gaps = 17/445 (3%)

Query: 28  FVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRI 87
            V S+GCQ NV D  +++ M    GY        ADLI+ NTC +RE A ++V+  +G +
Sbjct: 51  HVHSFGCQQNVSDGEKIKGMLAQMGYGFTPETAFADLILFNTCAVRENAEDRVFGNIGAL 110

Query: 88  RNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELL-ERAR 144
           + LK        +L++ V GC+ Q E   + + +  P V+++ G    + LP+++ E+  
Sbjct: 111 KKLKEK----NRNLIIAVGGCMVQQEHIAQRMRKSFPQVDIIFGTHVMHTLPQMIYEKLS 166

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
             +R +    S     E L ++     R+  V A + I  GC+ FCT+C+VP+ RG E S
Sbjct: 167 ENRRTLSIPESDGVIAEGLPVI-----RESKVKASVPIMYGCNNFCTYCIVPFVRGRERS 221

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R   +V+ E + LI++G  EI LLGQNVN+  GK  D     F+ LL  L +I G  +L 
Sbjct: 222 RRPEEVIAEVKGLINDGYKEILLLGQNVNS-YGKEYDFG---FAKLLSELDKIPGKYKLS 277

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           + TSHP+D +  LI    D   +  +LHLPVQ GSDRILK MNR +    Y ++I+  + 
Sbjct: 278 FMTSHPKDCTHELIDTIADSRHISYHLHLPVQCGSDRILKEMNRHYDTAHYLELIEYAKK 337

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             P +A+++D IVGFPGET +DF  T++L+ K+ Y  A++F YS R GT  + M + + +
Sbjct: 338 RIPKVALTTDIIVGFPGETYEDFLGTVELMKKVRYDSAYTFIYSKREGTKAAAMPDPISD 397

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVLNSK 443
             K +    L            +  +G  +EVL E  G+   G + G S     V  N  
Sbjct: 398 EDKGKWFRQLLDVQNSIGEKAYERFIGDEVEVLCEGIGRTADGLMTGHSRHGVIVDFNGT 457

Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468
              IG  + VRI       + GELV
Sbjct: 458 RDMIGKYVTVRIQKALPWAVTGELV 482


>gi|78183934|ref|YP_376369.1| hypothetical protein Syncc9902_0353 [Synechococcus sp. CC9902]
 gi|123757134|sp|Q3B002|RIMO_SYNS9 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|78168228|gb|ABB25325.1| Protein of unknown function UPF0004 [Synechococcus sp. CC9902]
          Length = 466

 Score =  393 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 125/457 (27%), Positives = 217/457 (47%), Gaps = 26/457 (5%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA-AEKV 80
           +   +      GC+ N  D+  M  +    GY      +DA ++V+NTC   + A  E V
Sbjct: 13  MAKPKVAFAHLGCEKNRVDTEHMVGLLAEAGYGVSTDEEDASVVVVNTCSFIQDAREESV 72

Query: 81  YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140
            + +G     K           +++AGC+AQ   EE+L   P    +VG   Y  + ++L
Sbjct: 73  RTLVGLAEQGKE----------LIIAGCLAQHFQEELLESIPEAKAIVGTGDYQHIVDVL 122

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           +R   G+RV           +                A+L + EGCD  C FC++P  RG
Sbjct: 123 QRVEAGERVNRVSAVPSFVGDEHLPRQ---RTTDQAVAYLKVAEGCDYRCAFCIIPKLRG 179

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            + SR +  +V EA +L + GV E+ L+ Q +    G  L G K   ++LL +L E++ +
Sbjct: 180 DQRSRPIESIVAEAHQLAEQGVQELILISQ-ITTNYGLDLYG-KPKLAELLRALGEVE-I 236

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
             +R   ++P  ++  ++ A+ D+  ++PYL LP+Q     +L++MNR   A    ++++
Sbjct: 237 PWIRVHYAYPTGLTASVVAAYRDVPNVVPYLDLPLQHSHPDVLRAMNRPWQADVNERLLN 296

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
            IR   PD  + +  IVGFPGET++ F+     ++   +     F +SP  GT  +++  
Sbjct: 297 EIREQLPDAVLRTTLIVGFPGETEEHFQHLKHFLETQRFDHVGIFTFSPEDGTAAADLPN 356

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQ 436
           +VD +V   R   L    +      N   VG+ ++VLIE+H  + G+++GR    +P + 
Sbjct: 357 RVDPDVAQARKDALMALQQPIAAERNQRWVGKTVDVLIEQHNPQTGEMIGRCARFAPEVD 416

Query: 437 S-VVL----NSKNHNIGDIIKVRITDVKISTLYGELV 468
             V +    + +    G  + V+IT   I  L G +V
Sbjct: 417 GEVHVQPGDDGQQAAPGSFVPVKITGADIYDLTGHIV 453


>gi|145356333|ref|XP_001422387.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144582629|gb|ABP00704.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 579

 Score =  393 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 160/490 (32%), Positives = 246/490 (50%), Gaps = 51/490 (10%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +  +V++YGCQMNV DS  M  +    GY+    ++DAD+I++NTC IR+KA  K++  L
Sbjct: 67  RAVYVETYGCQMNVNDSEVMMAVLEGAGYDETKEVNDADVILINTCAIRDKAEAKIWQRL 126

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA- 143
              R+L N   K     +V V GC+A+   E++L    + ++V GP  Y  LP L++   
Sbjct: 127 AYFRSLGNG-KKRSEKPVVGVLGCMAERIKEKLLEADRLADIVAGPDAYRDLPNLIDAVV 185

Query: 144 -RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
              G + ++   SVE+ +  +  V          +AF+TI  GCD  C FC+VPYTRG E
Sbjct: 186 GNPGGKAMNVQLSVEETYADIIPVRE----AGSHSAFVTIMRGCDNACAFCIVPYTRGRE 241

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVN---------------AWRGKGL----DGE 243
            SR L+ ++ E R L + GV E+TLLGQN+                     G     D E
Sbjct: 242 RSRDLASIMYEIRLLSEQGVKEVTLLGQNLANASTERLASASGSAFVGYADGFASRYDPE 301

Query: 244 KCT-----FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
           +       F++LL  ++ +   +R+R+T+ HP+D  D +++   D   +   LH+P QSG
Sbjct: 302 RKRAGTIQFAELLDKVASVDPEMRIRFTSPHPKDFPDDVLRVIRDRPNVSKCLHMPAQSG 361

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           S   L+ M R +T   Y  +IDR++++ P  AI++D I GF GET+DD   T+ L+  IG
Sbjct: 362 SSATLERMARGYTRESYFALIDRVKAMIPGCAITTDIISGFCGETEDDHEDTVSLMSAIG 421

Query: 359 YAQAFSFKYSPRLGTPGSNML-EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVL 417
           Y QAF F YS R GT G     + V E+VK  RL  +    R +        +G    VL
Sbjct: 422 YEQAFMFAYSEREGTAGQRHQIDDVPEDVKQRRLQEVIDAFRARAAEKQQMEIGSTHCVL 481

Query: 418 IEKHGKEK-GKLVGRSPWLQSVVLNSKNH------------------NIGDIIKVRITDV 458
           +E   K+   +  G++   + VV    +                     GD + VR+T  
Sbjct: 482 VEGPSKKNSDEWTGKTDTSKWVVFEKNDAIGKYAGDEDAPTSGSYGVKPGDYVAVRVTGC 541

Query: 459 KISTLYGELV 468
              TL+G+++
Sbjct: 542 STGTLFGQVL 551


>gi|225175074|ref|ZP_03729070.1| RNA modification enzyme, MiaB family [Dethiobacter alkaliphilus AHT
           1]
 gi|225169250|gb|EEG78048.1| RNA modification enzyme, MiaB family [Dethiobacter alkaliphilus AHT
           1]
          Length = 431

 Score =  393 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 143/440 (32%), Positives = 239/440 (54%), Gaps = 15/440 (3%)

Query: 28  FVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRI 87
              + GC++N  ++  ++++F   GYE V   + AD+ V+NTC +   +  K    + R 
Sbjct: 5   AFYTLGCKVNQTETAALQNLFGEAGYETVPFEETADVYVINTCTVTHLSDRKSRQMIRRA 64

Query: 88  RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147
           R       +   D ++VV GC AQ   ++I+   P V++V+G  + +RLPEL++ A+ G+
Sbjct: 65  R-------RTNPDAVIVVTGCYAQVSADDIM-EIPEVDLVIGTHSRHRLPELVQEAKKGR 116

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
                 +  +  FE +     G   +    AFL +QEGC +FC++C+VPY RG   SR  
Sbjct: 117 LNCVAPWEEKQGFEAMPASQSGERTR----AFLKVQEGCRQFCSYCIVPYARGPLHSRPP 172

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
                EA +L + G  E+ L G ++ +  G+ L GE    SDL+  L  I+ + R+R ++
Sbjct: 173 EDAAAEAERLAEQGFSEMVLSGVHLGS-YGEDLPGELA-LSDLIRELVTIEKIRRIRISS 230

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
             P +++  LI+   D   +  +LH+P+QSG D +L+ MNR++ + E+ Q+I  +R+  P
Sbjct: 231 IEPTEITPDLIEVLLDYPKVCRHLHIPLQSGDDHVLRRMNRKYDSAEFLQLIRWLRAQIP 290

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
           ++AI++D +VGFPGETD  F  T+++V K G+++   FKYSPR GTP +   EQ+   VK
Sbjct: 291 EMAITTDVMVGFPGETDSQFERTLEVVRKCGFSRIHVFKYSPRSGTPAAKFDEQISPQVK 350

Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNI 447
            ER   L     E   +F    +G+ +EVL E+    +G++ G +     V   +    +
Sbjct: 351 EERSRRLIDLGEELAGTFRRRFIGETVEVLFEE-SAGEGQITGLTEHYVRVTAEAPQAML 409

Query: 448 GDIIKVRITDVKISTLYGEL 467
           G I+KV I       L G++
Sbjct: 410 GQIVKVDILSELKDGLLGKV 429


>gi|195143761|ref|XP_002012866.1| GL23830 [Drosophila persimilis]
 gi|194101809|gb|EDW23852.1| GL23830 [Drosophila persimilis]
          Length = 589

 Score =  393 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 151/478 (31%), Positives = 246/478 (51%), Gaps = 37/478 (7%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++   + YGCQMN  D+  +  +    GYER   ++DADL++L TC +RE A +K+++ L
Sbjct: 98  RKVHFEVYGCQMNTNDTEVVWSILKQHGYERCQEVEDADLVMLVTCAVREGAEQKIWNRL 157

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             +R +K  R  +   L + + GC+A+   E +L +   V+V+ GP +Y  LP LL  +R
Sbjct: 158 RHLRAMKQKRGAKRQPLQLTLLGCMAERLKERLLDQEQCVDVIAGPDSYKDLPRLLAVSR 217

Query: 145 F-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             G   ++   S+++ +  +  V    +     TAF++I  GCD  CT+C+VP+TRG E 
Sbjct: 218 HYGNSAINVLLSLDETYADVMPVRLNSD---SPTAFVSIMRGCDNMCTYCIVPFTRGRER 274

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG------------------LDGEKC 245
           SR L+ +V+E + L + GV E+TLLGQNVN++R KG                        
Sbjct: 275 SRPLASIVNEVQALQEQGVKEVTLLGQNVNSYRDKGAGQTSDTSLVPGFKTVYKPKTGGI 334

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
            FS+LL S++E    +R+R+T+ HP+D SD +++   D   +   LHLP QSG+  +L  
Sbjct: 335 PFSELLQSVAEAVPEMRIRFTSPHPKDFSDEVLRVIRDYPNVCKQLHLPAQSGNTEVLAR 394

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           M R +T   Y ++++ IR + P + +SSDFI GF GET+ +F  T+ L++++ Y  A+ F
Sbjct: 395 MRRGYTREAYLELVEHIREILPTVGLSSDFICGFCGETEAEFEDTISLINRVQYNVAYLF 454

Query: 366 KYSPRLGTPGSNML-EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE 424
            YS R  T       + V   VK  RL  + +  RE     +    G+   +LIE   K 
Sbjct: 455 AYSMREKTTAHRRYVDDVPVAVKTARLQRMVQAFREGATQLHKNFEGKQQLILIEGKSKR 514

Query: 425 KG-KLVGRSPWLQSVVLNSKNHN-------------IGDIIKVRITDVKISTLYGELV 468
                 GR+     V++ + +               +GD +  +I +     L G  +
Sbjct: 515 SDAHWFGRNDANIKVIVPAMDLPTDTGDTARRRSIAVGDFVVAQIDESNSQVLKGTPL 572


>gi|16079597|ref|NP_390421.1| ribosomal protein S12 methylthiotransferase [Bacillus subtilis
           subsp. subtilis str. 168]
 gi|221310468|ref|ZP_03592315.1| hypothetical protein Bsubs1_13906 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221314791|ref|ZP_03596596.1| hypothetical protein BsubsN3_13822 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221319714|ref|ZP_03601008.1| hypothetical protein BsubsJ_13743 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221323991|ref|ZP_03605285.1| hypothetical protein BsubsS_13877 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|1730990|sp|P54462|YQEV_BACSU RecName: Full=Putative methylthiotransferase yqeV
 gi|1303812|dbj|BAA12468.1| YqeV [Bacillus subtilis]
 gi|1890061|dbj|BAA12080.1| YqeV [Bacillus subtilis]
 gi|2634989|emb|CAB14485.1| ribosomal protein S12 methylthiotransferase [Bacillus subtilis
           subsp. subtilis str. 168]
 gi|291484990|dbj|BAI86065.1| hypothetical protein BSNT_03787 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 451

 Score =  393 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 133/449 (29%), Positives = 233/449 (51%), Gaps = 21/449 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
                + GC++N Y++  +  +F   GYER +    AD+ V+NTC +     +K    + 
Sbjct: 3   TVAFHTLGCKVNHYETEAIWQLFKEAGYERRDFEQTADVYVINTCTVTNTGDKKSRQVIR 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R        I++  D ++ V GC AQ    EI+   P V++VVG Q   ++   +++ R 
Sbjct: 63  RA-------IRQNPDGVICVTGCYAQTSPAEIMA-IPGVDIVVGTQDREKMLGYIDQYRE 114

Query: 146 GKRVVDTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            ++ ++   ++     +E L +            A L IQEGC+ FCTFC++P+ RG+  
Sbjct: 115 ERQPINGVSNIMKARVYEELDVP----AFTDRTRASLKIQEGCNNFCTFCIIPWARGLLR 170

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS-EIKGLVR 262
           SR   +V+ +A++L+D G  EI L G +     G G D +   F+ LL  L   ++G+ R
Sbjct: 171 SRDPEEVIKQAQQLVDAGYKEIVLTGIHTG---GYGEDMKDYNFAKLLSELDTRVEGVKR 227

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R ++     ++D +I+     D ++ +LH+P+QSGS+ +LK M R++T   +   ++++
Sbjct: 228 IRISSIEASQITDEVIEVLDRSDKIVNHLHIPIQSGSNTVLKRMRRKYTMEFFADRLNKL 287

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           +   P +A++SD IVGFPGET+++F  T + + +  +++   F YS R GTP + M +QV
Sbjct: 288 KKALPGLAVTSDVIVGFPGETEEEFMETYNFIKEHKFSELHVFPYSKRTGTPAARMEDQV 347

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVL---IEKHGKEKGKLVGRSPWLQSVV 439
           DENVK ER+  L     +    +      +++E++     K  +E+   VG +     VV
Sbjct: 348 DENVKNERVHRLIALSDQLAKEYASQYENEVLEIIPEEAFKETEEENMFVGYTDNYMKVV 407

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG I+KV+I         G+ V
Sbjct: 408 FKGTEDMIGKIVKVKILKAGYPYNEGQFV 436


>gi|313893435|ref|ZP_07827007.1| tRNA methylthiotransferase YqeV [Veillonella sp. oral taxon 158
           str. F0412]
 gi|313442076|gb|EFR60496.1| tRNA methylthiotransferase YqeV [Veillonella sp. oral taxon 158
           str. F0412]
          Length = 431

 Score =  393 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 145/443 (32%), Positives = 246/443 (55%), Gaps = 18/443 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +     + GC++N YD+  M+ +F    YE V+  + AD+ V+NTC +     +K    +
Sbjct: 2   KTVAFTTLGCRVNQYDTDAMKGLFLQNNYEAVDFDEKADIYVINTCSVTNMGEKKSRQLI 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            + +       ++  D  V+V GC AQ + + I      VN+V+G     ++ EL+E+  
Sbjct: 62  RKAK-------RQNEDAYVIVTGCYAQLDPDAIAA-IDGVNLVIGTNNRSKIVELVEQLE 113

Query: 145 FGKRVVDT--DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
             +R ++   D   E  FE + +     ++ R   AF+ IQEGC+ +C+FC++PYTRG  
Sbjct: 114 STERQINAVRDIMKESNFEEMPLFGNESDKAR---AFMKIQEGCNNYCSFCIIPYTRGKL 170

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR +  +V+EA++L+D+G  EI L G ++    G  L G + T +D++ +L EI  L R
Sbjct: 171 KSRKIEDIVEEAKRLVDHGFHEIVLTGIHLG-NYGVELPG-RPTLADVVKALLEIPELYR 228

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+ +    ++SD L++       + P LHLP+Q+GSD +LK M R +T  EY+ +I ++
Sbjct: 229 IRFGSIESVEVSDELVELMDTDKRVCPNLHLPLQAGSDHVLKLMRRHYTLQEYKDLIAKL 288

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           RS   D++I++D I GFP ETD+DF  T++ V +IG+    +F YS R GTP + M +QV
Sbjct: 289 RSRIKDLSITTDIIAGFPQETDEDFEETLNTVREIGFTHIHAFPYSIREGTPAATMPDQV 348

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS-PWLQSVVLN 441
            E VK  R+  L    +    ++  + +G+  E+LIEK  +E G  +G +  ++   V +
Sbjct: 349 PEAVKKTRVALLNGLSQAGYEAYAKSRIGKPGEILIEK--EENGYYMGLTNEYVNGKVKS 406

Query: 442 SKNHNIGDIIKVRITDVKISTLY 464
              H IGD+I   +  ++ + L 
Sbjct: 407 DGAHKIGDLIGGTVVGLEDNYLI 429


>gi|303241628|ref|ZP_07328127.1| RNA modification enzyme, MiaB family [Acetivibrio cellulolyticus
           CD2]
 gi|302590848|gb|EFL60597.1| RNA modification enzyme, MiaB family [Acetivibrio cellulolyticus
           CD2]
          Length = 438

 Score =  393 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 144/444 (32%), Positives = 238/444 (53%), Gaps = 14/444 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++    + GC++N Y++  + +MF + GYE V+  + AD+ V+NTC +   +  K    +
Sbjct: 2   KKAAFYTLGCKVNQYETEAILEMFRNNGYEIVDFEEFADVYVINTCTVTNLSDRKSRQMI 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R +       K   D +VVVAGC AQ   +E+L   P VN+V+G +   ++ E ++   
Sbjct: 62  RRAK-------KNNEDSIVVVAGCYAQTSPDEVLS-IPGVNLVIGTKDKGKIIENIKSIE 113

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G+  V+    +    E   +    Y  K    AF+ IQEGC +FC++C++PY RG   S
Sbjct: 114 EGRNKVNLVQDIMKTREFEELGVEVY--KERTRAFIKIQEGCSQFCSYCIIPYARGPIRS 171

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R +  V+DE RKL  NG  EI L G ++ ++   G D +  +  D++  + EI G+ R+R
Sbjct: 172 RPVEYVLDEVRKLALNGYKEIVLTGIHIASY---GKDIKTTSLIDIIKKVHEIDGVERVR 228

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
             +  P  ++   +   G L+ + P+ H+ +QSG D  LK MNRR+T  EYR  I  +RS
Sbjct: 229 LGSIEPTTITHEFVNEIGKLEKVCPHFHISLQSGCDSTLKRMNRRYTTEEYRSSIALLRS 288

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
              D+A+++D +VGFPGETD++F  T+  +++I ++    FKYS R GTP +    Q+  
Sbjct: 289 GIKDVAVTTDVMVGFPGETDEEFNETVKFLNEISFSAMHVFKYSQRKGTPAAEFSNQISP 348

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVLNSK 443
             K ER   L +   ++   FN    G+ +EVL E+  K E G + G +P    V+   +
Sbjct: 349 KKKDERSEVLIELSSKKTKEFNKRFEGRKMEVLFEQEVKSESGLIEGLTPNYIRVLCEGE 408

Query: 444 NHNIGDIIKVRITDVKISTLYGEL 467
               G I+KV++ +     + G++
Sbjct: 409 PDLNGKILKVKLNEAVEDYITGQI 432


>gi|313891928|ref|ZP_07825529.1| ribosomal protein S12 methylthiotransferase RimO [Dialister
           microaerophilus UPII 345-E]
 gi|313119571|gb|EFR42762.1| ribosomal protein S12 methylthiotransferase RimO [Dialister
           microaerophilus UPII 345-E]
          Length = 448

 Score =  393 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 125/452 (27%), Positives = 221/452 (48%), Gaps = 16/452 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++    S GC  N+ D+  M  +  + GYE  N + +A +I++NTC   + A ++    +
Sbjct: 4   KKLGFISLGCSKNLVDTEMMVGILQNAGYELTNDLSEAHVIIVNTCTFIDPAKQESIETV 63

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             I N K    K G    +V AGC+ Q   E + +  P +++ +G  ++  + + ++++ 
Sbjct: 64  LEIANYK----KTGKCERLVAAGCLTQQYKEALAKEIPEIDIFIGTDSWRNILKAVQKSY 119

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
             +     +++         I            +++ I EGC+K CTFC +P+ RG   S
Sbjct: 120 EKENEKIYEFNCTPCASEELIPR--KLTTPSYMSYIKISEGCNKGCTFCYIPFVRGPMRS 177

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R++S ++ E R L   GV E  L+ Q++ +  G+ L  +  +   LL  L +I  +  +R
Sbjct: 178 RTISSILSEVRNLAKQGVREFNLIAQDL-SCYGQDL-RDGTSLILLLKQLVKIPEVKWIR 235

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
               +P + +D L+        +  Y+ +P+Q  SD +LK MNR+ T+    +++++IR+
Sbjct: 236 LFYLYPTNFNDELLDLISKERKICKYIDIPLQHISDNVLKRMNRKDTSESILKLLNKIRN 295

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             P I I +  +VGFPGET+ DF    + + KI +    +FK+SP+ GT  + M  Q+ E
Sbjct: 296 NIPYITIRTTLMVGFPGETESDFEDLCEFIKKIKFDNMGAFKFSPQEGTAAALMQNQISE 355

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV--GRS----PWLQSV 438
           +VK +R   L           ND  +G+  EVLIE   K+  KL+  GR+    P +   
Sbjct: 356 DVKEKRYDKLMSIQAGISEENNDLLIGKEAEVLIEDIIKDGEKLIAKGRTSFQAPDVDGN 415

Query: 439 --VLNSKNHNIGDIIKVRITDVKISTLYGELV 468
             + N  +   GD +K +I D     L  E +
Sbjct: 416 TYIYNFGDACPGDFVKTKIIDGYSYDLIAERI 447


>gi|296333299|ref|ZP_06875752.1| ribosomal protein S12 methylthiotransferase [Bacillus subtilis
           subsp. spizizenii ATCC 6633]
 gi|305675196|ref|YP_003866868.1| ribosomal protein S12 methylthiotransferase [Bacillus subtilis
           subsp. spizizenii str. W23]
 gi|296149497|gb|EFG90393.1| ribosomal protein S12 methylthiotransferase [Bacillus subtilis
           subsp. spizizenii ATCC 6633]
 gi|305413440|gb|ADM38559.1| ribosomal protein S12 methylthiotransferase [Bacillus subtilis
           subsp. spizizenii str. W23]
          Length = 451

 Score =  393 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 133/449 (29%), Positives = 234/449 (52%), Gaps = 21/449 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
                + GC++N Y++  +  +F   GYER +    AD+ V+NTC +     +K    + 
Sbjct: 3   TVAFHTLGCKVNHYETEAIWQLFKEAGYERRDFEQTADVYVINTCTVTNTGDKKSRQVIR 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R        I++  D ++ V GC AQ    EI+   P V++VVG Q   ++   +++ R 
Sbjct: 63  RA-------IRQNPDGVICVTGCYAQTSPAEIMA-IPGVDIVVGTQDREKMLGYIDQYRE 114

Query: 146 GKRVVDTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            ++ ++   ++     +E L +            A L IQEGC+ FCTFC++P+ RG+  
Sbjct: 115 ERQPINGVSNIMKARVYEELDVP----AFTDRTRASLKIQEGCNNFCTFCIIPWARGLLR 170

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS-EIKGLVR 262
           SR   +V+ +A++L+D G  EI L G +     G G D +   F+ LL  L   ++G+ R
Sbjct: 171 SRDPEEVIKQAQQLVDAGYKEIVLTGIHTG---GYGEDMKDYNFAKLLSELDTRVEGVKR 227

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R ++     ++D +I+     D ++ +LH+P+QSGS+ +LK M R++T   +   ++++
Sbjct: 228 IRISSIEASQITDEVIEVLDRSDKIVNHLHIPIQSGSNTVLKRMRRKYTMEFFADRLNKL 287

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           +   P +A++SD IVGFPGET+++F  T + + +  +++   F YS R GTP + M +QV
Sbjct: 288 KKALPGLAVTSDVIVGFPGETEEEFMETYNFIKEHKFSELHVFPYSKRTGTPAARMEDQV 347

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVL---IEKHGKEKGKLVGRSPWLQSVV 439
           DENVK ER+  L     +    +      +++E++     K  +E+   VG +     VV
Sbjct: 348 DENVKNERVHRLIALSDQLAKEYASQYENEVLEIIPEEAYKETEEENMFVGYTDNYMKVV 407

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG I+KV+I +       G+ V
Sbjct: 408 FKGTEDMIGKIVKVKILNAGYPYNEGQFV 436


>gi|262195718|ref|YP_003266927.1| MiaB-like tRNA modifying enzyme YliG [Haliangium ochraceum DSM
           14365]
 gi|262079065|gb|ACY15034.1| MiaB-like tRNA modifying enzyme YliG [Haliangium ochraceum DSM
           14365]
          Length = 486

 Score =  393 bits (1010), Expect = e-107,   Method: Composition-based stats.
 Identities = 124/468 (26%), Positives = 208/468 (44%), Gaps = 25/468 (5%)

Query: 20  QCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEK 79
             + P++ F  S GC  N  D+  M       GY  V   D+AD+IV+NTC   E A E+
Sbjct: 19  PAVAPRKVFFVSLGCPKNRVDTEVMLGHAGGAGYRIVAEPDEADVIVVNTCGFIEAAKEE 78

Query: 80  VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL 139
               +  +   K    +      +VV GC++Q   EE+    P ++ ++G   + +L   
Sbjct: 79  SVDTILEMAEYKKQNCE-----ALVVTGCLSQRYPEELAAEIPEIDHLLGSADFRQLNSA 133

Query: 140 LERARFGKRVVDTDYSVEDKFERL-------SIVDGGYNRKRG---VTAFLTIQEGCDKF 189
           L  A   K               +        + D    R R     +A+L I EGCD+ 
Sbjct: 134 LGSALSAKAGASPARPARSSLPVIQVSETPSDLYDHTTPRMRSGALHSAYLKIAEGCDRP 193

Query: 190 CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD---GEKCT 246
           C+FC++P  RG + SRS+  VV E   L+  G  EI L+ Q++    G  L      +  
Sbjct: 194 CSFCIIPKLRGPQRSRSIDSVVAETEALVAGGAREINLIAQDLT-RYGADLPAGPDGRPN 252

Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306
            + LL  ++ + G+  +R   ++P   +D LI+   +   ++ Y+ +P+Q   D +LK M
Sbjct: 253 LAGLLRRVARVPGVRWVRLHYTYPSAFTDELIEVIAEEPTVVKYIDVPLQHIDDEMLKRM 312

Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
            R H+A    +++ ++R     + + + FIVG PGETD+ F   +D V +  + +  +F 
Sbjct: 313 RRGHSARVTHELVAKLRQRIDGLVLRTTFIVGHPGETDESFGRLLDFVRETRFERVGAFT 372

Query: 367 YSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK- 425
           YS   GT    +  +V   V   R   L     E   + N   + + IEVL++    E  
Sbjct: 373 YSIEPGTVSGMLPNRVPPEVAEARRDELMALQSEIHRAHNQTLIDREIEVLVDGISDESD 432

Query: 426 ----GKLVGRSPWLQS-VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
               G+  G++P +   V L       GDI++  +TD     L   ++
Sbjct: 433 LLLQGRWYGQAPEIDGSVYLADGTAQPGDIVRAVVTDCAEYDLAASIL 480


>gi|307266431|ref|ZP_07547967.1| MiaB-like tRNA modifying enzyme [Thermoanaerobacter wiegelii
           Rt8.B1]
 gi|306918539|gb|EFN48777.1| MiaB-like tRNA modifying enzyme [Thermoanaerobacter wiegelii
           Rt8.B1]
          Length = 455

 Score =  393 bits (1010), Expect = e-107,   Method: Composition-based stats.
 Identities = 134/446 (30%), Positives = 236/446 (52%), Gaps = 15/446 (3%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
            +     + GC++N Y++  M ++F   GYE V+  + AD+ V+NTC +  ++  K    
Sbjct: 20  KKTVAFYTLGCKVNQYETEVMAELFKKAGYEVVDFNEKADVYVINTCTVTNRSDMKSRQE 79

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           + + R       K+  D LVV AGC  Q   EE     P V++ +G +   ++ EL+E  
Sbjct: 80  IRKAR-------KKNPDALVVAAGCYVQVSPEE-AFSLPEVDIAIGTKNKDKIVELVEEF 131

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
               + +    ++  + E        Y       A++ IQ+GC+++CT+C++PY RG   
Sbjct: 132 TQKNQKLSVVNNIMTQKEYEEFGVTAY--TERTRAYIKIQDGCNQYCTYCIIPYARGPVR 189

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR   +V+DE ++  D+G  EI L G ++ ++   G D +     D++  + EI G+ R+
Sbjct: 190 SRDPKKVLDEVKRFADSGYKEIVLTGIHIASY---GKDLKNIGLLDIIKMIHEIDGIKRI 246

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R ++  P  +++  +K   +L  +  + H+ +QSG D  LK M RR+T  EY+ +IDR+R
Sbjct: 247 RLSSIEPTFLTEEFVKEIANLPKMCRHYHVSLQSGCDETLKRMGRRYTTKEYKSVIDRLR 306

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
               D+AI++D +VGFPGET ++F  T   V++I +++   FKYS R GT   N   QV 
Sbjct: 307 EYIKDVAITTDVMVGFPGETGEEFLKTYKFVEEICFSKMHVFKYSRRKGTRAYNFPNQVA 366

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRSPWLQSVVLNS 442
            ++K +R   L +     +  F ++ +G+ +EVL E+  K  +G + G +    SV +  
Sbjct: 367 NHIKEDRSKKLIELSNRCEYKFMESFIGKTLEVLFEQPVKNMEGYVEGLTDNYLSVAVKG 426

Query: 443 KNHNI-GDIIKVRITDVKISTLYGEL 467
               +  +I  V+I ++K + L GE+
Sbjct: 427 DRKLLRNEIFTVKIKEIKDNLLIGEI 452


>gi|297544398|ref|YP_003676700.1| MiaB-like tRNA modifying protein [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
 gi|296842173|gb|ADH60689.1| MiaB-like tRNA modifying enzyme [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
          Length = 449

 Score =  393 bits (1010), Expect = e-107,   Method: Composition-based stats.
 Identities = 127/446 (28%), Positives = 235/446 (52%), Gaps = 15/446 (3%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
            +     + GC++N Y++  M ++F   GYE V+  + AD+ V+NTC +  ++  K    
Sbjct: 14  KKAVAFYTLGCKVNQYETEVMAELFKKAGYEVVDFDEKADVYVINTCTVTNRSDMKSRQE 73

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           + + R       K+  + +VV  GC  Q   +++    P V++ +G +   ++ EL+E  
Sbjct: 74  IRKAR-------KKNPNAVVVAVGCYVQVSPKDVFS-LPEVDIAIGTKNKDKIVELVEEF 125

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
               + +    ++  + E        Y       A++ IQ+GC+++CT+C++PY RG   
Sbjct: 126 TQKHQKLSVVNNIMTQKEYEEFEVTAY--TERTRAYVKIQDGCNQYCTYCIIPYARGPVR 183

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR   ++++E ++  D+G  EI L G ++ ++   G D +     D++  + EI G+ R+
Sbjct: 184 SREPEKILEEVKRFADSGYKEIVLTGIHIASY---GKDLKNIGLLDIIKRIHEIDGIKRI 240

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R ++  P  +++  +K    L  +  + H+ +QSG D  LK M RR+T  EY+ +IDR+R
Sbjct: 241 RLSSIEPVFLTEEFVKEIAKLPKMCRHYHVSLQSGCDETLKRMGRRYTTKEYKSVIDRLR 300

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
               D+AI++D +VGFPGET+++F  T   V++I +++   FKYS R GT   +   QV 
Sbjct: 301 KYIKDVAITTDVMVGFPGETEEEFLETYKFVEEICFSKMHVFKYSRRKGTRAYSFPNQVA 360

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRSPWLQSVVLNS 442
            ++K +R   L +  +  +  F ++ +G+ +EVL E+  K  KG + G +    SV +  
Sbjct: 361 NHIKEDRSKKLIELSKRCEYKFMESFIGKTLEVLFEQPVKNMKGYVEGLTDNYLSVAVKG 420

Query: 443 K-NHNIGDIIKVRITDVKISTLYGEL 467
                  +I  V+I + K + L GE+
Sbjct: 421 DIKLLRNEIYPVKIKERKDNFLIGEI 446


>gi|170040301|ref|XP_001847942.1| CDK5 regulatory subunit-associated protein 1 [Culex
           quinquefasciatus]
 gi|167863869|gb|EDS27252.1| CDK5 regulatory subunit-associated protein 1 [Culex
           quinquefasciatus]
          Length = 579

 Score =  393 bits (1010), Expect = e-107,   Method: Composition-based stats.
 Identities = 156/477 (32%), Positives = 246/477 (51%), Gaps = 39/477 (8%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F + YGCQMN  D+  +  +     Y+R  S+ DAD+++L TC IR+ A   V++ L
Sbjct: 78  RKVFFEVYGCQMNTNDTEIVWSILKGHEYQRTGSIKDADVVLLMTCAIRDGAESTVWNRL 137

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             +R +K  R  EG  L V V GC+A+    +++ +   V+VV GP +Y  LP LL   +
Sbjct: 138 KHVRLMKERRESEGRALQVGVLGCMAERLKRQLVEKEGSVDVVAGPDSYKDLPRLLAVGQ 197

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G++ ++   S+++ +  +  V      +   TA+++I  GCD  C++C+VP+TRG E S
Sbjct: 198 KGQKAINVLLSLDETYADVMPVKLDRKSR---TAYVSIMRGCDNMCSYCIVPFTRGKERS 254

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG--KGLDGEKC----------------- 245
           R ++ + DEA  L   G+ EITLLGQNVN++R      DGEK                  
Sbjct: 255 RPVASIRDEALHLEAKGIKEITLLGQNVNSYRDLSTESDGEKQASVLAPGFKTVYKTKVG 314

Query: 246 --TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
              F++LL  L+EI   +R+R+T+ HP+D    +++       +   LHLP QSGS  +L
Sbjct: 315 GLRFAELLTELAEIVPEMRIRFTSPHPKDFPREVLETIARYPNICKSLHLPAQSGSSTVL 374

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           + M R +T   Y  ++D +R++ P++ +SSDFI GF GETD +F  T+ L++++GY  AF
Sbjct: 375 ERMRRGYTREAYLNLVDEVRTIVPNVTLSSDFICGFCGETDAEFAETLSLIEQVGYHTAF 434

Query: 364 SFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422
            F YS R  T       + V   +K +RL  + K  R      N   VG+   +L+E   
Sbjct: 435 LFAYSMREKTTAHRRFTDDVPNPIKQQRLRDMIKVFRAGAERLNAQFVGREELILVEGAS 494

Query: 423 KE-KGKLVGRSPWLQSVVLNSKNHNI-------------GDIIKVRITDVKISTLYG 465
           K     L GR+     V++   +  I             GD + VRI +     L  
Sbjct: 495 KRSPNDLAGRNDGNVKVIIPGGDVPIGGEDVGERKTIVSGDYVAVRIVESNSQILKA 551


>gi|313888304|ref|ZP_07821975.1| ribosomal protein S12 methylthiotransferase RimO [Peptoniphilus
           harei ACS-146-V-Sch2b]
 gi|312845707|gb|EFR33097.1| ribosomal protein S12 methylthiotransferase RimO [Peptoniphilus
           harei ACS-146-V-Sch2b]
          Length = 438

 Score =  393 bits (1010), Expect = e-107,   Method: Composition-based stats.
 Identities = 130/448 (29%), Positives = 224/448 (50%), Gaps = 19/448 (4%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
             + + GC  N  DS  M  +     Y+ VN    AD++++NTC   + A E+    +  
Sbjct: 4   VHIVTLGCSKNDVDSSMMYSLLDKNKYQMVNEPSQADILIVNTCGFIDAAKEESIDTILE 63

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
               KN     G    V+++GC+AQ   EE+++  P ++ ++G      + ELL+R+  G
Sbjct: 64  SVEYKNE----GRCKKVLLSGCLAQRYPEELIKEIPEIDGIIGTGNIDYINELLDRSLAG 119

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
              + TD          + ++G        T ++ I EGC+  C++C++P  RG   SR 
Sbjct: 120 DLFIKTDNL------NSAYIEGIRKEVVNTTEYVKISEGCNNNCSYCIIPSLRGKNRSRK 173

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
           +  +  E   L+  G  EI L+ QN     G  L   K + ++L+  +S+I+ L  +R  
Sbjct: 174 IEDIYSEVEYLVSKGAREIILIAQNTT-DYGIDLY-SKYSLANLINKISKIEDLKWIRVL 231

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
             +P   +D LI+   + D L+ Y+ +P+Q  SD +LK MNR+ +     + +  +R   
Sbjct: 232 YLYPDHFTDELIEEFKNNDKLVNYVDMPLQHISDDVLKRMNRKTSKEHIIKTLKNLRKSV 291

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           PDI I + FIVGFPGE+DDDF   +D ++ I + +   F+YS   GT  +++ EQ+ +++
Sbjct: 292 PDIVIRTTFIVGFPGESDDDFNQLVDFIEDIKFDKLGVFEYSKEEGTRAASLDEQIPDSI 351

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSV--VL 440
           K ER   +     E         +G+ +EVLIE+   E+   VGR+    P +  V  V 
Sbjct: 352 KEERKNEIMAIQSEISAEILSKKIGKKLEVLIEEEVDEEN-YVGRTYMDSPEIDGVTYVH 410

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
           ++KN  +G  +++ + D     L GE++
Sbjct: 411 SAKNLEMGSFVQIDVVDSLDYDLVGEII 438


>gi|325068449|ref|ZP_08127122.1| RNA modification enzyme, MiaB family protein [Actinomyces oris K20]
          Length = 417

 Score =  393 bits (1010), Expect = e-107,   Method: Composition-based stats.
 Identities = 152/409 (37%), Positives = 243/409 (59%), Gaps = 24/409 (5%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDA------------DLIVLNTC 70
           +P+ + V++ GCQMNV+DS  M  +    GY RV  + +A            D++++NTC
Sbjct: 17  LPRTYHVRTLGCQMNVHDSEHMAGLLERAGYLRVEDVPEAAARATDAGDGGADVVIINTC 76

Query: 71  HIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGP 130
            +RE AA +++  LG++  +K    +E   + + VAGC+AQ  GE I+ R+P V+VV G 
Sbjct: 77  SVRENAATRLFGNLGQLAAVK----RERPGMQIAVAGCLAQQMGEGIVERAPWVDVVFGT 132

Query: 131 QTYYRLPELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKF 189
                LP LLERAR      V+ + S++     L        R+    A+++I  GC+  
Sbjct: 133 HNLDVLPALLERARHNSAAAVELEESLKVFPSTLPT-----RRESSYAAWVSIAVGCNNT 187

Query: 190 CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSD 249
           CTFC+VP  RG +  R    V+ E   +   G  E+TLLGQNVN+  G G  G++  F+ 
Sbjct: 188 CTFCIVPSLRGKQRDRRPGDVLAEVEAVAAQGAIEVTLLGQNVNS-YGVGF-GDRGAFAK 245

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
           LL +   ++G+ R+R+T+ HP   +D +I+A    + +MP LH+P+QSGSDR+L++M R 
Sbjct: 246 LLRAAGSVEGIERVRFTSPHPAAFTDDVIEAMATTEAVMPSLHMPLQSGSDRVLRAMRRS 305

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369
           +    +  I+D++R V P+ AI++D IVGFPGET++DF+AT+D+V++  +A A++F+YSP
Sbjct: 306 YRTQRFLGILDKVRDVMPEAAITTDIIVGFPGETEEDFQATLDVVEQARFASAYTFEYSP 365

Query: 370 RLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI 418
           R GTP ++  +QV   V  +R   L   +R      N+   G+++EVL+
Sbjct: 366 RPGTPAADRDDQVPTEVVKDRYRRLDALVRRIAHEENERQEGRVVEVLV 414


>gi|256751980|ref|ZP_05492850.1| MiaB-like tRNA modifying enzyme [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|320116201|ref|YP_004186360.1| MiaB-like tRNA modifying enzyme [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
 gi|256749185|gb|EEU62219.1| MiaB-like tRNA modifying enzyme [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|319929292|gb|ADV79977.1| MiaB-like tRNA modifying enzyme [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
          Length = 455

 Score =  393 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 132/446 (29%), Positives = 235/446 (52%), Gaps = 15/446 (3%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
            +     + GC++N Y++  M ++F   GYE V+  + AD+ V+NTC +  ++  K    
Sbjct: 20  KKTVAFYTLGCKVNQYETEVMAELFKKAGYEVVDFNEKADVYVINTCTVTNRSDMKSRQE 79

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           + + R       K+  D LVV  GC  Q   EE     P V++ +G +   ++ EL+E  
Sbjct: 80  IRKAR-------KKNPDALVVAVGCYVQVSPEE-AFSLPEVDIAIGTKNKDKIVELVEEF 131

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
               + +    ++  + E        Y       A++ IQ+GC+++CT+C++PY RG   
Sbjct: 132 TQKNQKLSVVNNIMTQKEYEEFGVTAY--TERTRAYIKIQDGCNQYCTYCIIPYARGPVR 189

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR   +V+DE ++  D+G  EI L G ++ ++   G D +     D++  + EI G+ R+
Sbjct: 190 SRDPKKVLDEVKRFADSGYKEIVLTGIHIASY---GKDLKNIGLLDIIKMIHEIDGIKRI 246

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R ++  P  +++  +K   +L  +  + H+ +QSG D  LK M RR+T  EY+ +IDR+R
Sbjct: 247 RLSSIEPTFLTEEFVKEIANLPKMCRHYHVSLQSGCDETLKRMGRRYTTKEYKSVIDRLR 306

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
               D+AI++D +VGFPGET+++F  T   V++I +++   FKYS R GT   N   QV 
Sbjct: 307 EYIKDVAITTDVMVGFPGETEEEFLKTYKFVEEICFSKMHVFKYSRRKGTRAYNFPNQVA 366

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRSPWLQSVVLNS 442
            ++K +R   L +     +  F ++ +G+ +EVL E+  K  +G + G +    S+ +  
Sbjct: 367 NHIKEDRSKKLIELSNRCEYKFMESFIGKTLEVLFEQPVKNMEGYVEGLTDNYLSIAVKG 426

Query: 443 K-NHNIGDIIKVRITDVKISTLYGEL 467
                  +I  V+I ++K + L GE+
Sbjct: 427 DIKLLRNEIFPVKIKEIKDNFLIGEI 452


>gi|126700065|ref|YP_001088962.1| putative radical SAM superfamily protein [Clostridium difficile
           630]
 gi|254976042|ref|ZP_05272514.1| putative radical SAM superfamily protein [Clostridium difficile
           QCD-66c26]
 gi|255093430|ref|ZP_05322908.1| putative radical SAM superfamily protein [Clostridium difficile CIP
           107932]
 gi|255101608|ref|ZP_05330585.1| putative radical SAM superfamily protein [Clostridium difficile
           QCD-63q42]
 gi|255307477|ref|ZP_05351648.1| putative radical SAM superfamily protein [Clostridium difficile
           ATCC 43255]
 gi|255315175|ref|ZP_05356758.1| putative radical SAM superfamily protein [Clostridium difficile
           QCD-76w55]
 gi|255517844|ref|ZP_05385520.1| putative radical SAM superfamily protein [Clostridium difficile
           QCD-97b34]
 gi|255650960|ref|ZP_05397862.1| putative radical SAM superfamily protein [Clostridium difficile
           QCD-37x79]
 gi|260684029|ref|YP_003215314.1| putative radical SAM superfamily protein [Clostridium difficile
           CD196]
 gi|260687689|ref|YP_003218823.1| putative radical SAM superfamily protein [Clostridium difficile
           R20291]
 gi|306520839|ref|ZP_07407186.1| putative radical SAM superfamily protein [Clostridium difficile
           QCD-32g58]
 gi|115251502|emb|CAJ69335.1| putative MiaB-like tRNA modifying enzyme [Clostridium difficile]
 gi|260210192|emb|CBA64398.1| putative radical SAM superfamily protein [Clostridium difficile
           CD196]
 gi|260213706|emb|CBE05587.1| putative radical SAM superfamily protein [Clostridium difficile
           R20291]
          Length = 432

 Score =  393 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 156/445 (35%), Positives = 249/445 (55%), Gaps = 15/445 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++    + GC++N Y++  M ++F   GYE+VNS + AD+ V+NTC +   +  K   ++
Sbjct: 2   KKVAFYTLGCKVNQYETEAMLELFEKDGYEQVNSEEYADVYVINTCTVTHMSDRKSRQYI 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R++       K+  D ++ V GC +Q   EEIL     VN+V+G     ++ E +++  
Sbjct: 62  RRVK-------KKNPDAIIAVVGCYSQVSPEEILD-IEEVNLVMGTNDRRKIVEEIKKIN 113

Query: 145 FGKRVVDTDYSVEDK-FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             K+V   D  ++ K FE + I       +    AF+ IQ+GCD+FCT+C++PY RG   
Sbjct: 114 SSKKVSTVDDIMKVKAFEEIEISQTNGKTR----AFMKIQDGCDRFCTYCIIPYARGRVR 169

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR +  +VDE +KL +NG  E+ L G +V A  GK L        D++  +++I+ + R+
Sbjct: 170 SRDIDSIVDEVKKLANNGYKEVVLTGIHV-ASYGKDLKDRDIKLLDVIKQINQIEKIERI 228

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R ++  P   +D  +     +D + P+ HL +QSG D  LK MNRR+T  EY+ I+DR+R
Sbjct: 229 RLSSVEPILFTDEFVNEVLKMDKVCPHYHLSLQSGCDETLKRMNRRYTTLEYKTIVDRLR 288

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           S  PD+AI++D IVGFPGET+++F+ T + + +I  +Q   FKYSPR GTP + M  QVD
Sbjct: 289 SKMPDVAITTDVIVGFPGETNEEFKKTYEFLKEIELSQMHIFKYSPRKGTPAATMENQVD 348

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
             +K  R   L    +     F    +G+ ++VL E+   E  K  G +     VV+ S 
Sbjct: 349 PQMKHFRSEQLLNLSKVNFNKFATKFIGRELDVLFEQ-NIEGNKYEGLTSNYIRVVVESD 407

Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468
            +  G I+KV+I DVK   + G L+
Sbjct: 408 KNIQGQILKVKINDVKDEYVEGILL 432


>gi|121534805|ref|ZP_01666625.1| RNA modification enzyme, MiaB family [Thermosinus carboxydivorans
           Nor1]
 gi|121306600|gb|EAX47522.1| RNA modification enzyme, MiaB family [Thermosinus carboxydivorans
           Nor1]
          Length = 432

 Score =  393 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 149/449 (33%), Positives = 234/449 (52%), Gaps = 19/449 (4%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           +P R    + GC++N +++  +E +F  +GY  V+  + AD+ V+NTC +     +K   
Sbjct: 1   MP-RAAFTTLGCKVNQFETEVIEGLFKQRGYTIVSFDEPADVYVINTCSVTHLGEKKSRQ 59

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            + R         +   + ++V  GC AQ   +++    P V+V+VG Q   R+ +L+E 
Sbjct: 60  LIRRAA-------RVNPEAVIVATGCYAQVSPDKVAA-IPGVDVIVGTQDRGRIVDLVEE 111

Query: 143 ARFGKRVVD--TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           AR  +  V+  TD    ++FE + I D     +    AFL IQEGC  FCT+C++PY RG
Sbjct: 112 ARRTRGQVNAVTDIMEAEQFEDIPIFDAPGRTR----AFLKIQEGCTNFCTYCIIPYARG 167

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
              SRSL  V  EA KLI  G  EI L G ++ A+     DG +   +D + ++  + GL
Sbjct: 168 PLRSRSLDSVKREAEKLIATGFKEIVLTGIHLGAYGRDMGDGLE--LADAVETVLSVAGL 225

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
           VRLR ++    ++SD L+        L P+LHLP+Q+G D +L  MNR +T  EY +++ 
Sbjct: 226 VRLRLSSLESVEVSDRLVALMRRDAKLCPHLHLPLQAGDDHVLSQMNRHYTTEEYSRLVG 285

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
            IR   PD+A+++D IVGFPGET   F  ++  V+++ +A+   F YS R GTP +    
Sbjct: 286 DIRRRVPDLAVTTDVIVGFPGETPTMFANSLAFVERMAFAKVHIFPYSRRSGTPAATYPN 345

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440
           QV E  K  R+  +Q+   +   +F  A VG+ +EVL E      G L G +     V  
Sbjct: 346 QVPEEEKKRRVREMQRVAEKGAAAFLAAFVGREMEVLFE--TANDGVLDGLTGNYIRVYT 403

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELVV 469
                 +G +  VR+       L+G L+ 
Sbjct: 404 RGGVDLVGTLGVVRLEKPYKDGLWGTLLA 432


>gi|329121012|ref|ZP_08249643.1| MiaB family RNA modification enzyme [Dialister micraerophilus DSM
           19965]
 gi|327471174|gb|EGF16628.1| MiaB family RNA modification enzyme [Dialister micraerophilus DSM
           19965]
          Length = 448

 Score =  393 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 125/452 (27%), Positives = 221/452 (48%), Gaps = 16/452 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++    S GC  N+ D+  M  +  + GYE  N + +A +I++NTC   + A ++    +
Sbjct: 4   KKLGFISLGCSKNLVDTEMMVGILQNAGYELTNDLSEAHVIIVNTCTFIDPAKQESIETV 63

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             I N K    K G    +V AGC+ Q   E + +  P +++ +G  ++  + + ++++ 
Sbjct: 64  LEIANYK----KTGKCERLVAAGCLTQQYKEALAKEIPEIDIFIGTDSWRNILKAVQKSY 119

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
             +     +++         I            +++ I EGC+K CTFC +P+ RG   S
Sbjct: 120 EKENEKIYEFNCTPCASEELIPR--KLTTPSYMSYIKISEGCNKGCTFCYIPFVRGPMRS 177

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R++S ++ E R L   GV E  L+ Q++ +  G+ L  +  +   LL  L +I  +  +R
Sbjct: 178 RTISSILSEVRNLAKQGVREFNLIAQDL-SCYGQDL-RDGTSLILLLKQLVKIPEVKWIR 235

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
               +P + +D L+        +  Y+ +P+Q  SD +LK MNR+ T+    +++++IR+
Sbjct: 236 LFYLYPTNFTDELLDLISKERKICKYIDIPLQHISDNVLKRMNRKDTSESILKLLNKIRN 295

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             P I I +  +VGFPGET+ DF    + + KI +    +FK+SP+ GT  + M  Q+ E
Sbjct: 296 NIPYITIRTTLMVGFPGETESDFEDLCEFIKKIKFDNMGAFKFSPQEGTAAALMQNQISE 355

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV--GRS----PWLQSV 438
           +VK +R   L           N+  +G+  EVLIE   K+  KL+  GR+    P +   
Sbjct: 356 DVKEKRYDKLMSIQAGISEENNELLIGKEAEVLIEDIIKDGEKLIAKGRTSFQSPDVDGN 415

Query: 439 --VLNSKNHNIGDIIKVRITDVKISTLYGELV 468
             + N  +   GD IK +I D     L  E +
Sbjct: 416 TYIYNFGDACPGDFIKTKIIDGYSYDLIAERI 447


>gi|255656429|ref|ZP_05401838.1| putative radical SAM superfamily protein [Clostridium difficile
           QCD-23m63]
 gi|296450124|ref|ZP_06891885.1| 2-methylthioadenine synthetase [Clostridium difficile NAP08]
 gi|296878505|ref|ZP_06902510.1| 2-methylthioadenine synthetase [Clostridium difficile NAP07]
 gi|296260887|gb|EFH07721.1| 2-methylthioadenine synthetase [Clostridium difficile NAP08]
 gi|296430312|gb|EFH16154.1| 2-methylthioadenine synthetase [Clostridium difficile NAP07]
          Length = 432

 Score =  393 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 156/445 (35%), Positives = 250/445 (56%), Gaps = 15/445 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++    + GC++N Y++  M ++F   GYE+VNS + AD+ V+NTC +   +  K   ++
Sbjct: 2   KKVAFYTLGCKVNQYETEAMLELFEKDGYEQVNSEEYADVYVINTCTVTHMSDRKSRQYI 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R++       K+  D ++ V GC +Q   EEIL     VN+V+G     ++ E +++  
Sbjct: 62  RRVK-------KKNPDAIIAVVGCYSQVSPEEILD-IEEVNLVMGTNDRRKIVEEIKKIN 113

Query: 145 FGKRVVDTDYSVEDK-FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             K+V   D  ++ K FE + I       +    AF+ IQ+GCD+FCT+C++PY RG   
Sbjct: 114 SSKKVSTVDDIMKVKAFEEIEISQTNGKTR----AFMKIQDGCDRFCTYCIIPYARGRVR 169

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR +  +VDE +KL +NG  E+ L G +V A  GK L        D++  +++I+ + R+
Sbjct: 170 SRDIDSIVDEVKKLANNGYKEVVLTGIHV-ASYGKDLKDRDIKLLDVIKQINKIEKIERI 228

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R ++  P   +D  +     +D + P+ HL +QSG D  LK MNRR+T  EY+ I+DR+R
Sbjct: 229 RLSSVEPILFTDEFVNEVLKMDKVCPHYHLSLQSGCDETLKRMNRRYTTLEYKTIVDRLR 288

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           S  PD+AI++D IVGFPGET+++F+ T + + +I  +Q   FKYSPR GTP + M  QVD
Sbjct: 289 SKMPDVAITTDVIVGFPGETNEEFKKTYEFLKEIELSQMHIFKYSPRKGTPAATMENQVD 348

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
             +K  R   L    +     F    +G+ ++VL E++  E  K  G +     VV+ S 
Sbjct: 349 PQMKHFRSEQLLNLSKVNFNKFATKFIGRKLDVLFEQNL-EGNKYEGLTSNYIRVVVESD 407

Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468
            +  G I+KV+I DVK   + G L+
Sbjct: 408 KNIQGQILKVKINDVKDEYVEGILL 432


>gi|78213845|ref|YP_382624.1| hypothetical protein Syncc9605_2337 [Synechococcus sp. CC9605]
 gi|123756842|sp|Q3AH63|RIMO_SYNSC RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|78198304|gb|ABB36069.1| Protein of unknown function UPF0004 [Synechococcus sp. CC9605]
          Length = 458

 Score =  393 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 124/460 (26%), Positives = 214/460 (46%), Gaps = 24/460 (5%)

Query: 18  VDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA 77
           +              GC+ N  D+  M  +    GY       DA ++V+NTC   + A 
Sbjct: 1   MTSTPTKPTVAFAHLGCEKNRVDTEHMVGLLAEAGYGVSTDESDAAVVVVNTCSFIQDAR 60

Query: 78  EKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLP 137
           E+    L  +               +++AGC+AQ   EE+L   P    +VG   Y  + 
Sbjct: 61  EESVRTLVELAEQGKE---------LIIAGCLAQHFQEELLESIPEAKAIVGTGDYQHIV 111

Query: 138 ELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197
           ++L+R   G+RV           +                AFL + EGCD  C FC++P 
Sbjct: 112 DVLQRVEVGERVNRVSAVPTFVGDEHLPRQ---RTTDQAVAFLKVAEGCDYRCAFCIIPK 168

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257
            RG + SR +  +V EA +L   GV E+ L+ Q +    G  L G K   ++LL +L ++
Sbjct: 169 LRGDQRSRPIESIVAEAHQLAAQGVQELILISQ-ITTNYGLDLYG-KPKLAELLRALGDV 226

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
           + +  +R   ++P  ++  ++ A+ ++  ++PYL LP+Q     +L++MNR   A    +
Sbjct: 227 E-IPWIRVHYAYPTGLTPDVLAAYREVPNVVPYLDLPLQHSHPEMLRAMNRPWQADVNDR 285

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
           ++D+IR   PD  + +  IVGFPGET++ F+  M  +++  +     F +SP  GT  ++
Sbjct: 286 LLDQIREQLPDAVLRTTLIVGFPGETEEHFQHLMGFLERQRFDHVGVFTFSPEDGTAAAD 345

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SP 433
           + ++VD  V   R   L    +      N   VG+ ++VLIE+H  + G+++GR    +P
Sbjct: 346 LPDRVDPEVAQARKDALMALQQPISAERNSRWVGRTVDVLIEQHNPQTGEMIGRCARFAP 405

Query: 434 WLQSVV-----LNSKNHNIGDIIKVRITDVKISTLYGELV 468
            +   V        +    G ++ V IT   I  L G++V
Sbjct: 406 EVDGEVRVQPGAEGQQAAPGSLVPVEITGADIYDLNGQMV 445


>gi|284040196|ref|YP_003390126.1| MiaB-like tRNA modifying enzyme YliG [Spirosoma linguale DSM 74]
 gi|283819489|gb|ADB41327.1| MiaB-like tRNA modifying enzyme YliG [Spirosoma linguale DSM 74]
          Length = 437

 Score =  393 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 126/460 (27%), Positives = 217/460 (47%), Gaps = 33/460 (7%)

Query: 17  IVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNS--MDDADLIVLNTCHIRE 74
           +  + I   +  + + GC  N+ DS  +       G    +    DDA+++V+NTC   +
Sbjct: 1   MKTKGIRTNKINIVTLGCSKNLVDSEVLFTQLKGNGMNVTHESKKDDANIVVINTCGFID 60

Query: 75  KAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYY 134
            A E+  + + R  + K +    G    V V GC++    +E+    P V+   G     
Sbjct: 61  NAKEESINTILRYVDAKEA----GIVDKVYVTGCLSHRYKDELEVEMPTVDAWFGTNELP 116

Query: 135 RLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCV 194
           R+ + L            DY  E   ERL      +       A+L I EGCD+ C+FC 
Sbjct: 117 RMLKTLR----------ADYKHELVGERLLTTPAHF-------AYLKIAEGCDRPCSFCA 159

Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL 254
           +P  RG  +SR + +++ EAR L   G  E+ L+ Q++  + G  L  +K   +DL+  L
Sbjct: 160 IPLMRGGHVSRPIDELLTEARSLARRGTKELILIAQDLT-YYGLDLY-KKRNLADLIDQL 217

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
           ++++G+  +R   ++P      ++    +   +  YL +P+Q+GS  +LK M R  T  +
Sbjct: 218 ADVEGIDWIRLQYAYPSGFPMDILDVMRNRPNVCNYLDMPLQTGSTELLKLMRRGITREK 277

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
              +I+ IR   PDI + +  IVG PGET+  F+ T D V+++ + +   F YS    T 
Sbjct: 278 TESLIETIREKVPDITLRTTLIVGHPGETEAMFQETYDFVERMRFDRLGVFTYSHEDDTH 337

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS-- 432
              M + +  ++K ER   L    +      N   VG+  +VL ++  KE G  +GR+  
Sbjct: 338 SFTMPDDIPADIKQERADELMDLQQGISQELNQQKVGKTYKVLFDR--KEGGYFIGRTEA 395

Query: 433 --PWLQS-VVLNSKNH-NIGDIIKVRITDVKISTLYGELV 468
             P + + V++ +  +  +GD   VRI   +   LYGE+V
Sbjct: 396 DSPEVDNEVLVPATQYVRLGDFANVRIDRAEEFDLYGEVV 435


>gi|186684627|ref|YP_001867823.1| MiaB-like tRNA modifying enzyme YliG [Nostoc punctiforme PCC 73102]
 gi|238066420|sp|B2IVR7|RIMO_NOSP7 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|186467079|gb|ACC82880.1| MiaB-like tRNA modifying enzyme YliG [Nostoc punctiforme PCC 73102]
          Length = 439

 Score =  393 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 132/447 (29%), Positives = 215/447 (48%), Gaps = 19/447 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
              +   GC+ N  D+  M  M    GY    + + AD +++NTC   E A ++    L 
Sbjct: 6   TIAISHLGCEKNRIDTEHMLGMLVEAGYGVDTNEELADYVIVNTCSFIEAARQESVRTLV 65

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +               +V+ GC+AQ   E++L   P    VVG   Y+++  ++ER   
Sbjct: 66  ELAEANKK---------IVITGCMAQHFQEQLLEELPEAVAVVGTGDYHKIVNVIERVEL 116

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G+RV     S+E  +              GV A+L + EGCD  C FC++P+ RG + SR
Sbjct: 117 GERVKQV--SIEPTYIADETTPRYRTTTEGV-AYLRVAEGCDYRCAFCIIPHLRGNQRSR 173

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           ++  +V EA +L+  GV EI L+ Q +    G  + G K   ++LL +L ++  +  +R 
Sbjct: 174 TIESIVAEAEQLVSQGVKEIILISQ-ITTNYGLDIYG-KPKLAELLRALGKVD-IPWIRM 230

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
             ++P  ++   I A  +   ++PYL LP+Q     IL++MNR         IIDRI++ 
Sbjct: 231 HYAYPTGLTPDAIAAIQETPNVLPYLDLPLQHSHPDILRAMNRPWQGRVNDGIIDRIKTA 290

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P   + + FIVGFPGET + F   ++ V +  +     F +S   GTP   +  Q+ + 
Sbjct: 291 LPTAVLRTTFIVGFPGETQEHFEHLLEFVQRHEFDHVGVFTFSSEEGTPAYKLPNQLAQE 350

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVVLN 441
           V  +R   L +  +      N   VG+I++VLIE+   E G+L+GR    SP +  +V  
Sbjct: 351 VMDDRRYQLMELQQPISQKKNQQEVGKIVDVLIEQENPESGELIGRSGRFSPEVDGLVYV 410

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                +G I+ V I       LYG++V
Sbjct: 411 KGQAKLGTIVPVAIHHADTYDLYGQVV 437


>gi|332981300|ref|YP_004462741.1| MiaB family RNA modification protein [Mahella australiensis 50-1
           BON]
 gi|332698978|gb|AEE95919.1| RNA modification enzyme, MiaB family [Mahella australiensis 50-1
           BON]
          Length = 443

 Score =  393 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 136/443 (30%), Positives = 233/443 (52%), Gaps = 15/443 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           +P +    + GC++N Y+S  M  +F   GYE V   +DAD+ V+NTC +   +  K   
Sbjct: 1   MP-KVAFYTLGCKVNQYESEAMVGLFRKAGYEIVPFEEDADVYVINTCTVTNISDRKSRQ 59

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            + R        ++   + +V V GC  Q   +E+      V++++G    + + EL+++
Sbjct: 60  MIRRA-------VRRNPNAVVAVTGCYTQRAADEV-SSIEGVDLIIGTDERHNIVELVQK 111

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           A      ++    + +      I    Y  K    AF+ I++GCD++CT+C++PY RG  
Sbjct: 112 AHGADGPINVVKDIRNVKSFEEIPIDSYEGK--TRAFVKIEDGCDRYCTYCIIPYARGPV 169

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR+   +VDE  +L  +G  EI L G +V ++   G D       D++  +  I G+ R
Sbjct: 170 RSRAPQDIVDEVSRLSQSGFKEIVLTGIHVASY---GKDIGGIGLIDIIEMVHGISGIER 226

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R ++  P  + +  I    +L  + P+ H+ +QSG D +L+ M R +T   Y+ I++R+
Sbjct: 227 IRLSSVEPMLLDNDFITRIKELPKVCPHFHISLQSGCDTVLRRMGRCYTTAVYKDIVNRL 286

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R   PD+AI++D IVGFPGETD +F  T+  V +I ++Q   F YSPR GTP + + +QV
Sbjct: 287 RKAIPDVAITTDVIVGFPGETDGEFEQTLAFVKEIAFSQVHVFPYSPREGTPAAKLKDQV 346

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
             ++K +R   + +  RE ++SF  + +G+I+ VL E H  E G   G +P    V++ S
Sbjct: 347 PPHIKEQRSHMMLQMARELKMSFMRSYIGRIMPVLFE-HEIEDGYYEGLTPNYIRVLMPS 405

Query: 443 KNHNIGDIIKVRITDVKISTLYG 465
                G II V++   +   + G
Sbjct: 406 DIDISGRIINVQLNKAEDDYIEG 428


>gi|300770384|ref|ZP_07080263.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Sphingobacterium
           spiritivorum ATCC 33861]
 gi|300762860|gb|EFK59677.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Sphingobacterium
           spiritivorum ATCC 33861]
          Length = 478

 Score =  393 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 151/462 (32%), Positives = 250/462 (54%), Gaps = 16/462 (3%)

Query: 16  QIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREK 75
           +   +    ++ +++SYGCQMN  DS  +  +   +G+E     ++AD++ +NTC IRE 
Sbjct: 23  EASAENSNGRKLYIESYGCQMNFSDSEIVASILMDKGFETTKDFNEADVVFINTCSIREN 82

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135
           A  +V + L      K+        ++V V GC+A+    + L    +V+VVVGP  Y  
Sbjct: 83  AETRVRNRLKEFEFAKSK----NPGMIVGVLGCMAERLKSKFLEEEKLVDVVVGPDAYRD 138

Query: 136 LPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
           LP L+E+   G + V+   S E+ +  ++ V        G+TAF++I  GCD  C+FCVV
Sbjct: 139 LPNLIEQVDDGAKAVNVLLSREETYADINPVRLN---TNGITAFISIMRGCDNMCSFCVV 195

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL------DGEKCTFSD 249
           P+TRG E SR +  ++ EA+ L + G  E+TLLGQNV++++            E   F+ 
Sbjct: 196 PFTRGRERSRDVDSIIKEAQDLFNAGYREVTLLGQNVDSYKFTAPVAEGESPAEPVNFAQ 255

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
           LL  ++++  L+R+R++TSHP+D++D ++      + +  Y+HLPVQSG+ R+L+ MNR 
Sbjct: 256 LLAKVADVSPLLRVRFSTSHPKDITDEVLHTMARYENICNYIHLPVQSGNSRVLELMNRT 315

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369
           +    Y   +D IR + P+  IS+D I GF  ET+++ + T+ ++D + Y  A+ F YS 
Sbjct: 316 YDRAWYIDRVDAIRRILPECGISTDVITGFCTETEEEHQETLSMMDYVKYDYAYMFAYSE 375

Query: 370 RLGTPGSN-MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK- 427
           R GT  +    + + E +K  RL  +  K R          VG++ ++LIE + K   + 
Sbjct: 376 RPGTLAAKRYEDDIPEEIKKRRLTEVVAKQRLHSHYRIQNFVGKVHKILIEGYSKRSDQD 435

Query: 428 LVGRSPWLQSVVLNSKN-HNIGDIIKVRITDVKISTLYGELV 468
             GR+     VV    N + IGD + V       +TL G +V
Sbjct: 436 FAGRNDQNAMVVFPVDNRYKIGDYVNVIGESCTSATLLGRIV 477


>gi|296274350|ref|YP_003656981.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Arcobacter nitrofigilis
           DSM 7299]
 gi|296098524|gb|ADG94474.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Arcobacter nitrofigilis
           DSM 7299]
          Length = 439

 Score =  393 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 148/447 (33%), Positives = 253/447 (56%), Gaps = 19/447 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ F+++ GCQMN  DS  +       + Y+  ++M+DADLI++NTC +REK  +K++S 
Sbjct: 7   KKLFIQTLGCQMNDTDSQHIIAELEKYKDYKTTDNMEDADLIIINTCSVREKPVQKLFSE 66

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G+    K    K      + V GC A   G++I++R+P V+ VVG +   ++ ++++  
Sbjct: 67  IGQFNAKKKDGAK------IGVCGCTASHLGKDIIKRAPYVDFVVGARNISKIKDIIDVK 120

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
              +  ++ D S  +            +        + I  GCDK CT+C+VP TRG EI
Sbjct: 121 GAVEISIENDDSTYEFA---------RSETSMYKTSVNISIGCDKECTYCIVPATRGDEI 171

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE-KCTFSDLLYSLSEIKGLVR 262
           S     +V + +K +D G  E+ LLGQNVN++  +  D   K TF+ LL  +S+I+GL R
Sbjct: 172 SIPPEMIVQQIQKDVDKGAVEVMLLGQNVNSYGRRFSDKRAKTTFTKLLQEISKIEGLRR 231

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+T+ HP  M D  I+       +   +H+P+QSGS  ILK+M R +T   +    ++I
Sbjct: 232 IRFTSPHPLHMDDEFIEEFSSNPKISKCIHMPLQSGSTSILKAMKRGYTKEWFLNRAEKI 291

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ- 381
           R + P++ I++D IVGFPGET +DF  TMD+++K+ + Q F+FKYSPR  T    + +Q 
Sbjct: 292 RRLVPNVRITTDIIVGFPGETQEDFEDTMDVIEKVKFDQIFNFKYSPRPNTAALALKDQE 351

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           +D+ +   RL+ +    +E  V   ++ +G+ +E+L+E + K  G++ G +     V + 
Sbjct: 352 IDDEIAGARLIKVIDLHKEHLVEHMNSHIGKTVEILVE-NLKSDGEVCGFTDNWCQVFVK 410

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
             +  +G  +KV+I D   + L GE++
Sbjct: 411 GSDELLGKFVKVKINDASRTALKGEVI 437


>gi|284052700|ref|ZP_06382910.1| MiaB-like tRNA modifying enzyme YliG [Arthrospira platensis str.
           Paraca]
 gi|291570232|dbj|BAI92504.1| tRNA modifying enzyme MiaB-like protein [Arthrospira platensis
           NIES-39]
          Length = 439

 Score =  392 bits (1008), Expect = e-107,   Method: Composition-based stats.
 Identities = 130/451 (28%), Positives = 217/451 (48%), Gaps = 19/451 (4%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
                      GC+ N  D+  M  +    GY+  ++ + AD +V+NTC   E A E+  
Sbjct: 2   ATKPTIAFSHLGCEKNRIDTEHMIGLLAEAGYQVDSNEEAADYVVVNTCSFIESAREESV 61

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           + +  +               VV+ GC+ Q   E++L   P    VVG   Y+++  ++ 
Sbjct: 62  NTIVELAEAHKK---------VVITGCMVQHFQEQLLDELPEAVAVVGTGDYHKIVNVIN 112

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           R   G RV +   S +  +     V        GV A+L I EGC+  C FC++P+ RG 
Sbjct: 113 RVEKGDRVSEI--SADPTYIADHTVPRYRTTTEGV-AYLRIAEGCNYRCAFCIIPHLRGN 169

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           + SR++  +V EA++L D GV E+ L+ Q +    G  + GE    +DL+ +L ++  + 
Sbjct: 170 QRSRTIESIVTEAKQLADQGVQELVLISQ-ITTNYGTDIYGEPK-LADLIRALGKVD-VP 226

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
            +R   ++P  ++  +I A  +    +PYL LP+Q     IL++MNR         II+ 
Sbjct: 227 WIRMHYAYPTGLTPKVIDAITETPNFLPYLDLPLQHSHPEILRAMNRPWQGQVNDHIIEN 286

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I++  P+  I + FIVGFPGET+  F   +  V +  +     F +SP  GTP   +   
Sbjct: 287 IKTAMPNAVIRTTFIVGFPGETNSHFEHLLKFVKRHEFDHVGVFTFSPEEGTPAYTLDNT 346

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQS 437
           V + V   R   L +  +   +  N  C+G++++VL+E+     G+ +GRS    P +  
Sbjct: 347 VSQAVMDARRDALMQVQQPISLKGNRQCIGEVVDVLVEQENPSTGEFIGRSARFAPEVDG 406

Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           +V    N  +G ++ V+ITD  I  LYG  V
Sbjct: 407 LVYVEGNARLGSLVSVKITDADIYDLYGHTV 437


>gi|320355049|ref|YP_004196388.1| 30S ribosomal protein S12P methylthiotransferase [Desulfobulbus
           propionicus DSM 2032]
 gi|320123551|gb|ADW19097.1| SSU ribosomal protein S12P methylthiotransferase [Desulfobulbus
           propionicus DSM 2032]
          Length = 448

 Score =  392 bits (1008), Expect = e-107,   Method: Composition-based stats.
 Identities = 127/450 (28%), Positives = 207/450 (46%), Gaps = 15/450 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +  ++ S GC  N+ DS  M       GY  V+  D A ++++NTC     A E+    +
Sbjct: 2   KTLYIVSLGCPKNLVDSEVMLAALEQSGYAVVDDPDQASVLLINTCGFIRPAVEEAIDTI 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             +   K           +VV GC+ Q  G E+L   P V++ VG   + R+  +LE+  
Sbjct: 62  FELAAYKEQ----NPHQKLVVTGCMVQRYGSELLNELPEVDLFVGLDDFPRIGTMLEQLP 117

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
              + + T                     R   A+L I EGCD  C +C++P  RG   S
Sbjct: 118 LRPQCIVTSGPSTFLMNNTLPRRISTPFFR---AYLKITEGCDNRCAYCMIPSIRGRLRS 174

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R+++ ++ EA +L   GV E+ L+ Q++ A  G+ L G   +   LL +L     +  LR
Sbjct: 175 RAMTDLLLEATRLQQAGVRELALIAQDLTA-YGRDL-GNGTSLVSLLEALLTQTDIPWLR 232

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
              ++P  ++D L+    D   L+PYL +P Q  S  +L++MNR +     + +I RIR 
Sbjct: 233 LLYAYPSGITDDLLHLMADQPRLLPYLDIPFQHVSTPVLRAMNRHYDHRALQDLILRIRR 292

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           + PD AI +  +VGFPGET DD    ++ +          F+Y    G+  + + +++ E
Sbjct: 293 IVPDCAIRTTMLVGFPGETRDDVDLLLEALQTWQLDHVGVFQYQDEEGSRAAKLPDKISE 352

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GRS----PWLQS-V 438
             K  R   +               VG++  VL+E   +E   L+ GRS    P +   V
Sbjct: 353 EKKEARYQQVMAVQATISAQRQQRFVGRVEPVLVEGISEESDLLLEGRSRFQAPEIDGCV 412

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            + + +   GDI+ VRIT+     L GE+V
Sbjct: 413 YITAGHVTPGDIVPVRITEAHTYDLVGEVV 442


>gi|119510100|ref|ZP_01629240.1| hypothetical protein N9414_19797 [Nodularia spumigena CCY9414]
 gi|119465287|gb|EAW46184.1| hypothetical protein N9414_19797 [Nodularia spumigena CCY9414]
          Length = 442

 Score =  392 bits (1008), Expect = e-107,   Method: Composition-based stats.
 Identities = 134/447 (29%), Positives = 216/447 (48%), Gaps = 19/447 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
              V   GC+ N  D+  M  +    GY    + + AD +++NTC   E A ++    L 
Sbjct: 6   TIAVSHLGCEKNRIDTEHMLGLLVEAGYSVDTNEELADYVIVNTCSFIEAARQESVRTLV 65

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +               VV+ GC+AQ   E++L   P    +VG   Y+++  ++ER   
Sbjct: 66  ELAEANKK---------VVITGCMAQHFQEQLLEELPEAVALVGTGDYHKIVNVIERVEQ 116

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G++V +   S+E  +              GV A+L + EGCD  C FC++PY RG + SR
Sbjct: 117 GEQVKEV--SLEPTYIADETTPRYRTTTEGV-AYLRVAEGCDYRCAFCIIPYLRGNQRSR 173

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           ++  +V EA +L   GV EI L+ Q +    G  + G K   ++LL +L ++  +  +R 
Sbjct: 174 TIESIVAEAEQLASQGVQEIILISQ-ITTNYGLDIYG-KPKLAELLRALGKVD-VPWIRM 230

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
             ++P  ++  +I+A  +   ++PYL LP+Q     IL+SMNR         II+RI++ 
Sbjct: 231 HYAYPTGLTPDVIEAIQETHNVLPYLDLPLQHSHPDILRSMNRPWQGRVNDGIIERIKAA 290

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P+  + + FIVGFPGET + F    + V +  +     F +SP  GTP   +  Q+ ++
Sbjct: 291 LPNAVLRTTFIVGFPGETAEHFEHLREFVQRHEFDHVGVFTFSPEEGTPAYKLANQLPQS 350

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVVLN 441
           V  ER   L           N   +G+I+EVLIE+   E GKL+GR    SP +   +  
Sbjct: 351 VMDERWHKLMALQEPIAGKKNQQEIGKIVEVLIEQENPETGKLIGRSGRFSPEVDGQIYV 410

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                +G I+ V I       LYG++V
Sbjct: 411 DGEAKLGTIVPVAIHSADTYDLYGQVV 437


>gi|307153171|ref|YP_003888555.1| RNA modification enzyme, MiaB family [Cyanothece sp. PCC 7822]
 gi|306983399|gb|ADN15280.1| RNA modification enzyme, MiaB family [Cyanothece sp. PCC 7822]
          Length = 436

 Score =  392 bits (1008), Expect = e-107,   Method: Composition-based stats.
 Identities = 138/450 (30%), Positives = 225/450 (50%), Gaps = 26/450 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
              +   GC+ N  DS  M  +    GY  V+  D AD +++NTC    +A ++    L 
Sbjct: 6   TIAISHLGCEKNRIDSEHMLGLLAQAGYG-VDDPDLADYVIVNTCSFIGEARQESVRTLV 64

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +               ++++GC+AQ   +E+L   P    +VG   Y+++ E++ER   
Sbjct: 65  ELAEANKK---------IIISGCLAQHFQDELLCELPEAVALVGTGDYHKIVEVIERVES 115

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT---AFLTIQEGCDKFCTFCVVPYTRGIE 202
           G+RV +         E   I D    R R  T   A+L + EGCD  C+FC++P+ RG +
Sbjct: 116 GQRVKEIS------PEPTYIADENLPRYRTTTEGVAYLRVAEGCDYRCSFCIIPHLRGNQ 169

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SRS+  +V EA +L   GV EI L+ Q +    G  L GE    ++LL SL ++  +  
Sbjct: 170 RSRSIESIVAEAEQLAAQGVQEIILISQ-ITTNYGLDLYGEPK-LAELLRSLGKVD-VPW 226

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R   ++P  ++  +IKA      ++PYL LP+Q     IL++MNR         II+RI
Sbjct: 227 IRIHYAYPTGLTPKVIKAIQQTPNVLPYLDLPLQHSHPEILRAMNRPWQGKVNDSIIERI 286

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           +   P+  + + FIVGFPGETD+ F   ++ V +  +     F +SP   TP   M  Q+
Sbjct: 287 KDTIPEAILRTTFIVGFPGETDEHFAHLVEFVKRHQFDHVGVFTFSPEEETPAYRMANQI 346

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSV 438
            + +  +R   + +  +   +  N AC+G  ++VLIE+     G+L+GRS    P +  +
Sbjct: 347 PQEIMEQRRDTIMQIQQPISLQKNCACIGDTVDVLIEQENPHTGQLIGRSARFAPEVDGL 406

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           V      ++G ++ V+I D  I  LYGE+V
Sbjct: 407 VYVEGEASLGSLVSVKIKDADIYDLYGEVV 436


>gi|167037786|ref|YP_001665364.1| MiaB-like tRNA modifying protein [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|166856620|gb|ABY95028.1| MiaB-like tRNA modifying enzyme [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
          Length = 467

 Score =  392 bits (1008), Expect = e-107,   Method: Composition-based stats.
 Identities = 132/446 (29%), Positives = 235/446 (52%), Gaps = 15/446 (3%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
            +     + GC++N Y++  M ++F   GYE V+  + AD+ V+NTC +  ++  K    
Sbjct: 32  KKTVAFYTLGCKVNQYETEVMAELFKKAGYEVVDFNEKADVYVINTCTVTNRSDMKSRQE 91

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           + + R       K+  D LVV  GC  Q   EE     P V++ +G +   ++ EL+E  
Sbjct: 92  IRKAR-------KKNPDALVVAVGCYVQVSPEE-AFSLPEVDIAIGTKNKDKIVELVEEF 143

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
               + +    ++  + E        Y       A++ IQ+GC+++CT+C++PY RG   
Sbjct: 144 TQKNQKLSVVNNIMTQKEYEEFGVTAY--TERTRAYIKIQDGCNQYCTYCIIPYARGPVR 201

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR   +V+DE ++  D+G  EI L G ++ ++   G D +     D++  + EI G+ R+
Sbjct: 202 SRDPKKVLDEVKRFADSGYKEIVLTGIHIASY---GKDLKNIGLLDIIKMIHEIDGIKRI 258

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R ++  P  +++  +K   +L  +  + H+ +QSG D  LK M RR+T  EY+ +IDR+R
Sbjct: 259 RLSSIEPTFLTEEFVKEIANLPKMCRHYHVSLQSGCDETLKRMGRRYTTKEYKSVIDRLR 318

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
               D+AI++D +VGFPGET+++F  T   V++I +++   FKYS R GT   N   QV 
Sbjct: 319 EYIKDVAITTDVMVGFPGETEEEFLKTYKFVEEICFSKMHVFKYSRRKGTRAYNFPNQVA 378

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRSPWLQSVVLNS 442
            ++K +R   L +     +  F ++ +G+ +EVL E+  K  +G + G +    S+ +  
Sbjct: 379 NHIKEDRSKKLIELSNRCEYKFMESFIGKTLEVLFEQPVKNMEGYVEGLTDNYLSIAVKG 438

Query: 443 K-NHNIGDIIKVRITDVKISTLYGEL 467
                  +I  V+I ++K + L GE+
Sbjct: 439 DIKLLRNEIFPVKIKEIKDNFLIGEI 464


>gi|153951503|ref|YP_001398505.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Campylobacter jejuni
           subsp. doylei 269.97]
 gi|229890470|sp|A7H4S5|MIAB_CAMJD RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|152938949|gb|ABS43690.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Campylobacter jejuni
           subsp. doylei 269.97]
          Length = 433

 Score =  392 bits (1008), Expect = e-107,   Method: Composition-based stats.
 Identities = 151/446 (33%), Positives = 239/446 (53%), Gaps = 18/446 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ F+++ GC MNV DS  M       + Y     + +ADLI++NTC +REK   K++S 
Sbjct: 4   KKLFIQTLGCAMNVRDSEHMIAELTQKENYALTEDIKEADLILINTCSVREKPVHKLFSE 63

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G    +K    K      + V GC A   G EI +R+P V+ V+G +   ++ + ++  
Sbjct: 64  VGGFEKVKKEGAK------IGVCGCTASHLGNEIFKRAPYVDFVLGARNISKITQAIKTP 117

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           +F    +D D S     +          R     +++ I  GCDK CT+C+VP+TRG EI
Sbjct: 118 KFMGIDIDYDESEFAFADF---------RNSIYKSYINISIGCDKHCTYCIVPHTRGDEI 168

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVR 262
           S   + +  EA+K ++ G  EI LLGQNVN +  +  +  +K  FSDLL  LS I+ L R
Sbjct: 169 SIPFNIIHKEAQKAVEKGAKEIFLLGQNVNNYGKRFRNEHKKMDFSDLLEELSTIEDLER 228

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+T+ HP  M D  ++   +   +   +H+P+QSGS  ILK+M R +T   Y     ++
Sbjct: 229 IRFTSPHPLHMDDKFLEVFANNPKVCKSMHMPLQSGSSEILKAMKRGYTKKWYLNRALKL 288

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R + P+++IS+D IV FPGE++ DF  TMD+++K+ + Q FSFKYS R  T  + M  Q+
Sbjct: 289 RELCPNVSISTDIIVAFPGESEKDFEETMDVLEKVRFEQIFSFKYSKRPLTKAATMSNQI 348

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
           DE   + RL  LQ +  E           +  +VL E+  +    + GR+     V +  
Sbjct: 349 DEETASRRLSTLQNRHSEILDEIVKKQENKTFKVLFEEL-RVGNSIAGRTDNNFLVQVEG 407

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
               +G   +V+IT+ K   LYGE++
Sbjct: 408 SEELLGQFKEVKITNAKRMVLYGEII 433


>gi|237751475|ref|ZP_04581955.1| 2-methylthioadenine synthetase [Helicobacter bilis ATCC 43879]
 gi|229372841|gb|EEO23232.1| 2-methylthioadenine synthetase [Helicobacter bilis ATCC 43879]
          Length = 444

 Score =  392 bits (1008), Expect = e-107,   Method: Composition-based stats.
 Identities = 159/447 (35%), Positives = 252/447 (56%), Gaps = 21/447 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + ++++ GC MNV DS  +       +GY    ++ +ADLI++NTC +REK  +K++S +
Sbjct: 9   KLYIETLGCAMNVRDSEHIIAELQDKEGYSLTANIQEADLILINTCSVREKPEQKLFSEI 68

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           G+    K    K      + V GC A A G EI+++SP V+ V+G +   ++  ++ +  
Sbjct: 69  GQFAKHKKDGAK------IGVCGCTASAMGHEIIKKSPHVDFVLGARNISKITSVIHKP- 121

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
              + V+ D S +D     S      +++ G  A L I  GCDK C +C+VP+TRG EIS
Sbjct: 122 ---KAVEIDTSYDD-----STYVFSDSKQSGFKALLNISIGCDKKCAYCIVPFTRGKEIS 173

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG-LDGEKCTFSDLLYSLSEIKGLVRL 263
                +  EA KL+ NGV EI LLGQNVN +  +     EK  F+ LL  LS+I GL R+
Sbjct: 174 IPFDLLYQEANKLVKNGVKEILLLGQNVNNYGVRFSTPHEKIDFTTLLRELSKIDGLERI 233

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+T+ HP  M+D  +        +   +H+P+QSGS++ILKSM R +T   Y   I  ++
Sbjct: 234 RFTSPHPLHMNDSFLDEFASNPKICKSIHIPLQSGSNKILKSMKRGYTQEWYLDRIAYLK 293

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ-- 381
              P++ IS+D IVGFPGE DDDF+ TM +++ + +   +SF YSPR  T   +  ++  
Sbjct: 294 KQSPNVGISTDIIVGFPGENDDDFKETMSVLESVRFDTMYSFIYSPRPNTLSHSWGDKDS 353

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV--GRSPWLQSVV 439
           V + V  ERL  LQ++ RE     +   +G+I +VLI+ + K   +    GRS   + + 
Sbjct: 354 VPKEVAKERLAILQQRHREILQENSQKELGKIHKVLIDSNKKSLSETFSEGRSDTNRLIR 413

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGE 466
           + ++  ++G I+ + IT V  STL+G+
Sbjct: 414 IENEFIDMGAIVDIEITKVVGSTLFGK 440


>gi|108759982|ref|YP_631966.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Myxococcus
           xanthus DK 1622]
 gi|122388752|sp|Q1D5V7|MIAB_MYXXD RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|108463862|gb|ABF89047.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Myxococcus xanthus DK
           1622]
          Length = 462

 Score =  392 bits (1008), Expect = e-107,   Method: Composition-based stats.
 Identities = 176/449 (39%), Positives = 260/449 (57%), Gaps = 17/449 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +R+F+ ++GCQMNV DSLRM ++     Y      D+ADLI+LNTC IREKA +K+ S L
Sbjct: 2   KRYFIHTFGCQMNVNDSLRMSEVLSQMSYAPTPVPDNADLIILNTCSIREKAEDKMLSAL 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR + +K S        L+ V GCVAQ E +++L++ P ++ V GP    RLP+++ R  
Sbjct: 62  GRYKPVKAS-----RGALIGVGGCVAQQEKDKLLKKVPYLDFVFGPDNIARLPDIIGRVS 116

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
             +  V     V  +       D   +R + VT F+T+ +GCD  C+FC+VP+TRG E+S
Sbjct: 117 AERERVVETAFVNSEEYVFPRADPETSRGK-VTEFVTVMKGCDNVCSFCIVPHTRGREVS 175

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R+   V+ E   L   GV E+TL+GQNVN++ G        +F+ LL   +E+ G+ R+R
Sbjct: 176 RAFPDVLVEVADLAKVGVREVTLIGQNVNSYAG------GISFAQLLLRTAEVPGIERVR 229

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +TTSHP D+SD LI+A      + P+ HLPVQ GSDRILK M R +T  +Y + + ++R 
Sbjct: 230 FTTSHPHDLSDELIEAFRVQPKITPHFHLPVQCGSDRILKMMRRDYTVVQYLERLAKLRE 289

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ--- 381
            RP IA+++D IVGFPGET+++F  TM L +++ Y   FSF YSPR  T  +   +    
Sbjct: 290 ARPGIAVTTDIIVGFPGETEEEFEMTMQLTEQVRYDNQFSFVYSPRPKTGAALREKDWGP 349

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVL 440
           V   VK  RL  LQK  R        A VG  +EV++E H + +  K  GR+P  ++V  
Sbjct: 350 VPHEVKIARLERLQKLQRRISGEITAALVGSEVEVMVEGHSRYDATKRFGRTPENRTVNF 409

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELVV 469
           +  +   G  + V++     + L G+ V 
Sbjct: 410 DG-DAPAGSFVTVKVERATPNQLAGKQVA 437


>gi|312135098|ref|YP_004002436.1| RNA modification enzyme, miab family [Caldicellulosiruptor
           owensensis OL]
 gi|311775149|gb|ADQ04636.1| RNA modification enzyme, MiaB family [Caldicellulosiruptor
           owensensis OL]
          Length = 434

 Score =  392 bits (1008), Expect = e-107,   Method: Composition-based stats.
 Identities = 146/446 (32%), Positives = 244/446 (54%), Gaps = 17/446 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    + GC++N Y++  + ++F   G+E V+    AD+ V+NTC +   +  K    + 
Sbjct: 2   KIAFYTLGCKVNQYETQAVAELFKESGFEIVDFDSKADVYVINTCTVTNMSDRKSRQAIK 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           + + L         + +VVV GC  Q    E+  +   +++++G +   ++ + ++    
Sbjct: 62  KAKKL-------SPESIVVVMGCYPQVYPHEV-EKIRDIDIIIGTKDRQKIVDYVKEYLE 113

Query: 146 GKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            K+  V   +      FE L I +     +    AF+ I+EGCD+FC++C++PY RG   
Sbjct: 114 NKKKIVAIDEGYKRGTFEELKISEFNERSR----AFIKIEEGCDQFCSYCIIPYARGAVR 169

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SRSL  + +E R+L+ NG  E  + G N++A  GK LDG K T  D++  ++EI+G+ R+
Sbjct: 170 SRSLESIEEEVRRLVSNGYKEFVITGINISA-YGKDLDG-KITLIDVIERINEIEGVKRI 227

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R ++  P  MS+  I      D L  +LHL +QSGSD+ILK MNR +T  +Y+ I+DRI+
Sbjct: 228 RLSSLEPLIMSEQFISRLLSFDKLCHHLHLSLQSGSDKILKFMNRHYTTAQYQDIVDRIK 287

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
               D+A ++D IVGFPGET++DF AT++ V KIG+++   F++SP+ GT   +M  QVD
Sbjct: 288 EKWDDVAFTTDIIVGFPGETEEDFNATLEFVQKIGFSRIHVFRFSPKKGTKAYDMPNQVD 347

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
              K  R   +++        F+   VG+ +EVLIE+     G   G S      V+   
Sbjct: 348 SKEKERRSKVMKEVAANLSYQFHRKFVGKWLEVLIEQDSDFDGYYEGYSGNYIRTVVRKN 407

Query: 444 NHNI-GDIIKVRITDVKISTLYGELV 468
           +  + G+I KV+IT      + GE++
Sbjct: 408 HFIVPGEIYKVKITQAYEQYVKGEII 433


>gi|321312027|ref|YP_004204314.1| ribosomal protein S12 methylthiotransferase [Bacillus subtilis
           BSn5]
 gi|320018301|gb|ADV93287.1| ribosomal protein S12 methylthiotransferase [Bacillus subtilis
           BSn5]
          Length = 451

 Score =  392 bits (1008), Expect = e-107,   Method: Composition-based stats.
 Identities = 133/449 (29%), Positives = 233/449 (51%), Gaps = 21/449 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
                + GC++N Y++  +  +F   GYER +    AD+ V+NTC +     +K    + 
Sbjct: 3   TVAFHTLGCKVNHYETEAIWQLFKEAGYERRDFEQTADVYVINTCTVTNTGDKKSRQVIR 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R        I++  D ++ V GC AQ    EI+   P V++VVG Q   ++   +++ R 
Sbjct: 63  RA-------IRQNPDGVICVTGCYAQTSPAEIMA-IPGVDIVVGTQDREKMLGYIDQYRE 114

Query: 146 GKRVVDTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            ++ ++   ++     +E L +            A L IQEGC+ FCTFC++P+ RG+  
Sbjct: 115 ERQPINGVSNIMKARVYEELDVP----AFTDRTRASLKIQEGCNNFCTFCIIPWARGLLR 170

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS-EIKGLVR 262
           SR   +V+ +A++L+D G  EI L G +     G G D +   F+ LL  L   ++G+ R
Sbjct: 171 SRDPEEVIKQAQQLVDAGYKEIVLTGIHTG---GYGEDMKDYNFAKLLSELDTRVEGVKR 227

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R ++     ++D +I+     D ++ +LH+P+QSGS+ +LK M R++T   +   ++++
Sbjct: 228 IRISSIEASQITDKVIEVLDRSDKIVNHLHIPIQSGSNTVLKRMRRKYTMEFFADRLNKL 287

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           +   P +A++SD IVGFPGET+++F  T + + +  +++   F YS R GTP + M +QV
Sbjct: 288 KKALPGLAVTSDVIVGFPGETEEEFMETYNFIKEHKFSELHVFPYSKRTGTPAARMEDQV 347

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVL---IEKHGKEKGKLVGRSPWLQSVV 439
           DENVK ER+  L     +    +      +++E++     K  +E+   VG +     VV
Sbjct: 348 DENVKNERVHRLIALSDQLAKEYASQYENEVLEIIPEEAYKETEEENMFVGYTDNYMKVV 407

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  IG I+KV+I         G+ V
Sbjct: 408 FKGTEDMIGKIVKVKILKAGYPYNEGQFV 436


>gi|311233220|gb|ADP86074.1| RNA modification enzyme, MiaB family [Desulfovibrio vulgaris RCH1]
          Length = 476

 Score =  392 bits (1008), Expect = e-107,   Method: Composition-based stats.
 Identities = 176/463 (38%), Positives = 257/463 (55%), Gaps = 21/463 (4%)

Query: 15  SQIVDQCIVP---QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCH 71
           +      I P   + F ++++GCQMNV DS  +      +G+      + A L ++NTC 
Sbjct: 18  ASAQADTIPPMHDRTFHIETFGCQMNVNDSDWLARALMERGFSPAPFGE-ARLTIVNTCS 76

Query: 72  IREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ 131
           +R+K  +KVYS LGRIR   +       D  V V GCVAQ  G     R P V +V G  
Sbjct: 77  VRDKPEQKVYSLLGRIRQATSK----KPDAFVAVGGCVAQQIGSGFFSRFPQVRLVFGTD 132

Query: 132 TYYRLPELLERARFGK--RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKF 189
                P+ L+R       ++   D+S ED  ER +++  G       + F+ I +GCD F
Sbjct: 133 GLAMAPQALDRLVEEPDLKLSLLDFS-EDYPERDAVLGQGAV---PASVFVNIMQGCDNF 188

Query: 190 CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSD 249
           C +C+VPYTRG + SR+   ++DE R L+D G  EITLLGQNVN++ G+   G+  TF+ 
Sbjct: 189 CAYCIVPYTRGRQKSRATGTILDECRALLDRGAREITLLGQNVNSF-GQDSHGDGTTFAQ 247

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
           LL+ ++ + GL RLR+ T HP+D++  +++A G L  L P LHLP+Q+GSDRILK M RR
Sbjct: 248 LLHKVAALPGLERLRFVTPHPKDIAPEVVEAFGTLPNLCPRLHLPLQAGSDRILKLMGRR 307

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369
           +    Y +I+D +R+ RPDI +SSD IVGFPGET++DF  TMD ++ +GYA ++SF YS 
Sbjct: 308 YDMARYLRIVDDLRAARPDIVLSSDIIVGFPGETEEDFMETMDALETVGYAASYSFCYSD 367

Query: 370 RLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG--- 426
           R GT    + +++   VK ERL  LQ              VG+ +EVL+E   ++ G   
Sbjct: 368 RPGTRAEMLPDKLSREVKLERLERLQTLQNRLTERCLQDMVGRKVEVLLEGMSRKPGDEG 427

Query: 427 -KLVGRSPWLQSVVL--NSKNHNIGDIIKVRITDVKISTLYGE 466
               GR P+   V +     +   G  + V +   K  +L  E
Sbjct: 428 DSWQGRDPYGNLVNVALPQGSDVRGRFLPVVVAQAKKHSLLAE 470


>gi|195037130|ref|XP_001990018.1| GH19109 [Drosophila grimshawi]
 gi|193894214|gb|EDV93080.1| GH19109 [Drosophila grimshawi]
          Length = 647

 Score =  392 bits (1007), Expect = e-107,   Method: Composition-based stats.
 Identities = 155/487 (31%), Positives = 240/487 (49%), Gaps = 41/487 (8%)

Query: 17  IVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA 76
            +D     +R   + YGCQMN  D+  +  +    GY+R   +  AD+++L TC +R+ A
Sbjct: 150 AIDYNGQGRRVHFEVYGCQMNTNDTEVVWSILHENGYQRCEDVASADVVMLVTCAVRDGA 209

Query: 77  AEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL 136
            +K++  L  +R LK  R      L + + GC+A+   E +L +   V+V+ GP +Y  L
Sbjct: 210 EQKIWHRLRHLRALKERRGTRRHPLQLTLLGCMAERLKERLLEQEQCVDVIAGPDSYKDL 269

Query: 137 PELLERARF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
           P LL  AR  G   ++   S+++ +  +  V    +     TAF++I  GCD  CT+C+V
Sbjct: 270 PRLLAVARHYGNSAINVLLSLDETYADVMPVRLNSD---SPTAFVSIMRGCDNMCTYCIV 326

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-------GLDGEKCT-- 246
           P+TRG E SR L  +V E R L   GV E+TLLGQNVN++R +         DG   +  
Sbjct: 327 PFTRGRERSRPLDSIVREVRTLQQQGVKEVTLLGQNVNSYRDRSGENNQATTDGNMASGF 386

Query: 247 ------------FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP 294
                       F+ LL S++E    +R+R+T+ HP+D SD +++   D   +   LHLP
Sbjct: 387 STVYKPKTGGLPFAVLLQSVAEAVPEMRIRFTSPHPKDFSDEVLRVIRDYPNVCKQLHLP 446

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
            QSG+  +L  M R +T   Y Q++  IR + P++ +SSDFI GF GET+ +F  T+ L+
Sbjct: 447 AQSGNTAVLARMRRGYTRDAYLQLVTHIRQMLPEVGLSSDFICGFCGETEAEFEDTVTLI 506

Query: 355 DKIGYAQAFSFKYSPRLGTPGSNML-EQVDENVKAERLLCLQKKLREQQVSFNDACVGQI 413
           + + Y  AF F YS R  T       + V   VK  RL  + +  R      +    GQ 
Sbjct: 507 ESVRYNVAFLFAYSMREKTTAHRRYVDDVPTAVKTARLQRMVQAFRAGATHLHKRFEGQQ 566

Query: 414 IEVLIEKHGKE-KGKLVGRSPWLQSVVLNS--------------KNHNIGDIIKVRITDV 458
             +LIE   K       GR+     V++ +              +N  +GD +  RI + 
Sbjct: 567 QLILIEGKSKRSDSHWFGRNDANIKVIVPAASIPTTADAGESSRRNIGVGDFVVARIVES 626

Query: 459 KISTLYG 465
               L G
Sbjct: 627 NSQVLKG 633


>gi|317153127|ref|YP_004121175.1| RNA modification enzyme, MiaB family [Desulfovibrio aespoeensis
           Aspo-2]
 gi|316943378|gb|ADU62429.1| RNA modification enzyme, MiaB family [Desulfovibrio aespoeensis
           Aspo-2]
          Length = 452

 Score =  392 bits (1007), Expect = e-107,   Method: Composition-based stats.
 Identities = 182/456 (39%), Positives = 261/456 (57%), Gaps = 22/456 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +F + ++GCQMNV+DS  +     S+G++     D+A + + NTC +R+K  +KVYS LG
Sbjct: 2   KFHITTFGCQMNVHDSQWLARALESRGWQEAG-EDEALVYIFNTCSVRDKPEQKVYSELG 60

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           RI     + +     +  VV GCVAQ  G     R P V +V G       P  LER   
Sbjct: 61  RIA----AHLGRDDRVFAVVGGCVAQQIGRGFFERFPFVRLVFGSDGIVGAPNALERLVA 116

Query: 146 G--KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           G  +RV   D+    + ER +  +   NR R   AF+TI +GCD FC +C+VPYTRG + 
Sbjct: 117 GDDERVALLDFMPVYE-ERETPGEQTANRTR--QAFVTIMQGCDNFCAYCIVPYTRGRQK 173

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR    VVDE R L+ +GV EITLLGQNVN++ G    G   +F+ LL  ++ + GL RL
Sbjct: 174 SRHPDAVVDECRALVASGVREITLLGQNVNSF-GLDKGGAGVSFAQLLRRVAGLDGLDRL 232

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+TTSHP+D++  +I A G+ D+L P LHLP+QSGSD +LK+M RR+T   Y + ++ +R
Sbjct: 233 RFTTSHPKDIAPEVIAAFGEFDMLCPSLHLPLQSGSDAMLKAMRRRYTLDHYMRTVEALR 292

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
             RP IA+++D IVGFPGET+ DF+AT+D+++ +GY  +FSFKYS R G    NM  +VD
Sbjct: 293 RARPGIALTTDLIVGFPGETEADFQATLDVMEAVGYDSSFSFKYSDRPGVAAVNMEPKVD 352

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK--EKG-------KLVGRSPW 434
             V A+RL+ LQ               G   +V +E   +  + G          GR P 
Sbjct: 353 PQVAADRLMRLQTLQNSITRKCLKMLEGVETDVFVEGLSRIQDPGATSSTATSWKGRDPA 412

Query: 435 LQSVVLNSK--NHNIGDIIKVRITDVKISTLYGELV 468
            + V + +      +G ++ VRIT  K  +L GE +
Sbjct: 413 GRIVNVPTDVREGLVGLLMPVRITQAKKHSLMGERI 448


>gi|164686289|ref|ZP_02210319.1| hypothetical protein CLOBAR_02727 [Clostridium bartlettii DSM
           16795]
 gi|164601891|gb|EDQ95356.1| hypothetical protein CLOBAR_02727 [Clostridium bartlettii DSM
           16795]
          Length = 432

 Score =  392 bits (1007), Expect = e-107,   Method: Composition-based stats.
 Identities = 145/445 (32%), Positives = 239/445 (53%), Gaps = 15/445 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++    + GC++N Y++  M ++F  +GYE+  + D AD+ V+NTC +   +  K   ++
Sbjct: 2   KKVAFYTLGCKVNQYETEAMLELFEKEGYEKAETEDYADVYVINTCTVTHMSDRKSRQYI 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R++       K+  D ++ V GC +Q   EEIL     VN+V+G     ++ E +++  
Sbjct: 62  RRMK-------KKNPDAIIAVVGCYSQVSPEEILS-IDEVNLVMGTNDRKKIVEEVKKID 113

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRG-VTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             ++V   D    D  +  +  +   N+  G   AF+ IQ+GCD++C++C++PY RG   
Sbjct: 114 ASRKVSTVD----DIMKVKAFEEIEINKTNGKTRAFMKIQDGCDRYCSYCIIPYARGRVR 169

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR L  +V E   L  NG  E+ L G +V A  GK +        D++  +++I+G+ R+
Sbjct: 170 SRDLESIVKEVENLASNGYKEVVLTGIHV-ASYGKDIKDSDIKLLDVIKQINDIEGIERI 228

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R ++  P   +D  ++A   +D + P+ HL +QSG D  LK M RR+T  EY+ I+DR+R
Sbjct: 229 RLSSVEPILFTDEFVEAVSTMDKVCPHYHLSLQSGCDETLKRMKRRYTTEEYKAIVDRLR 288

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           +  P+++I++D IVGFPGET+++F  T + +  I       FKYSPR GTP + M  QVD
Sbjct: 289 AAIPNVSITTDVIVGFPGETNEEFDKTYEFLKDIELTHMHVFKYSPRKGTPAATMENQVD 348

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
            + K +R   L +   E    F    + +   VL E+   +  K  G +     V++ S 
Sbjct: 349 PSTKHDRSEKLLQLNEENFNKFGQKMLDKEFNVLFEQKVGD-NKYEGLTENYVKVIVESD 407

Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468
           N     I+KV+I DVK   L G LV
Sbjct: 408 NDISEQILKVKIKDVKNEFLEGILV 432


>gi|116071448|ref|ZP_01468716.1| hypothetical protein BL107_04849 [Synechococcus sp. BL107]
 gi|116065071|gb|EAU70829.1| hypothetical protein BL107_04849 [Synechococcus sp. BL107]
          Length = 458

 Score =  392 bits (1007), Expect = e-107,   Method: Composition-based stats.
 Identities = 126/453 (27%), Positives = 216/453 (47%), Gaps = 26/453 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA-AEKVYSFL 84
                  GC+ N  D+  M  +    GY      +DA ++V+NTC   + A  E V + +
Sbjct: 9   TVAFAHLGCEKNRVDTEHMVGLLAEAGYGVSTDEEDASVVVVNTCSFIQDAREESVRTLV 68

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           G     K           +++AGC+AQ   EE+L   P    +VG   Y  + ++L+R  
Sbjct: 69  GLAEQGKE----------LIIAGCLAQHFQEELLESIPEAKAIVGTGDYQHIVDVLQRVE 118

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G+RV           +                A+L + EGCD  C FC++P  RG + S
Sbjct: 119 SGERVNRVSAVPSFVGDEHLPRQ---RTTDQAVAYLKVAEGCDYRCAFCIIPKLRGDQRS 175

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R +  +V EA +L + GV E+ L+ Q +    G  L G K   ++LL +L E++ +  +R
Sbjct: 176 RPIESIVAEAHQLAEQGVQELILISQ-ITTNYGLDLYG-KPKLAELLRALGEVE-IPWIR 232

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
              ++P  ++  ++ A+ D+  ++PYL LP+Q     +L++MNR   A    +++D+IR 
Sbjct: 233 VHYAYPTGLTPAVVAAYRDVPNVVPYLDLPLQHSHPDVLRAMNRPWQADVNERLLDQIRE 292

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             PD  + +  IVGFPGET++ F+     ++   +     F +SP  GT  +++  +VD 
Sbjct: 293 QLPDAVLRTTLIVGFPGETEEHFQHLATFLETQRFDHVGIFTFSPEDGTAAADLPNRVDP 352

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQS-VV 439
           +V   R   L    +      N   VG+ ++VLIE+H  + G+++GR    +P +   V 
Sbjct: 353 DVAQARKDALMALQQPIAAERNQRWVGKTVDVLIEQHNPQTGEMIGRCSRFAPEVDGEVH 412

Query: 440 L----NSKNHNIGDIIKVRITDVKISTLYGELV 468
           +    + +    G  + V+IT   I  L G +V
Sbjct: 413 VQPGDDGQQAAPGSFVPVKITGADIYDLTGHIV 445


>gi|227538855|ref|ZP_03968904.1| 2-methylthioadenine synthetase [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227241364|gb|EEI91379.1| 2-methylthioadenine synthetase [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 478

 Score =  392 bits (1007), Expect = e-107,   Method: Composition-based stats.
 Identities = 150/462 (32%), Positives = 250/462 (54%), Gaps = 16/462 (3%)

Query: 16  QIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREK 75
           +   +    ++ +++SYGCQMN  DS  +  +   +G+E     ++AD++ +NTC IRE 
Sbjct: 23  EASAENSNGRKLYIESYGCQMNFSDSEIVASILMDKGFETTKDFNEADVVFINTCSIREN 82

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135
           A  +V + L      K+        ++V V GC+A+    + L    +V+VVVGP  Y  
Sbjct: 83  AETRVRNRLKEFEFAKSK----NPGMIVGVLGCMAERLKSKFLEEEKLVDVVVGPDAYRD 138

Query: 136 LPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
           LP L+E+   G + V+   S E+ +  ++ V        G+TAF++I  GCD  C+FCVV
Sbjct: 139 LPNLIEQVDDGAKAVNVLLSREETYADINPVRLN---TNGITAFISIMRGCDNMCSFCVV 195

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL------DGEKCTFSD 249
           P+TRG E SR +  ++ EA+ L + G  E+TLLGQNV++++            E   F+ 
Sbjct: 196 PFTRGRERSRDVDSIIKEAQDLFNAGYREVTLLGQNVDSYKFTAPVAEGESPAEPVNFAQ 255

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
           LL  ++++  L+R+R++TSHP+D++D ++      + +  Y+HLPVQSG+ R+L+ MNR 
Sbjct: 256 LLAKVADVSPLLRVRFSTSHPKDITDEVLHTMARYENICNYIHLPVQSGNSRVLELMNRT 315

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369
           +    Y   +D IR + P+  IS+D I GF  ET+++ + T+ ++D + Y  A+ F YS 
Sbjct: 316 YDRAWYIDRVDAIRRILPECGISTDVITGFCTETEEEHQETLSMMDYVKYDYAYMFAYSE 375

Query: 370 RLGTPGSN-MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK- 427
           R GT  +    + + E +K  RL  +  K R          VG++ ++LIE + K   + 
Sbjct: 376 RPGTLAAKRYEDDIPEEIKKRRLTEVVAKQRLHSHYRIQNFVGKVHKILIEGYSKRSDQD 435

Query: 428 LVGRSPWLQSVVLNSKN-HNIGDIIKVRITDVKISTLYGELV 468
             GR+     VV    N + +GD + V       +TL G +V
Sbjct: 436 FAGRNDQNAMVVFPVDNRYKVGDYVNVIGESCTSATLLGRIV 477


>gi|242309674|ref|ZP_04808829.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489]
 gi|239523675|gb|EEQ63541.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489]
          Length = 438

 Score =  392 bits (1007), Expect = e-107,   Method: Composition-based stats.
 Identities = 151/453 (33%), Positives = 247/453 (54%), Gaps = 22/453 (4%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++ F+++ GC MN  DS  +       + Y    +  +ADLI++NTC +REK  +K++
Sbjct: 1   MSKKLFIETLGCAMNERDSEHIIAELEDKENYTLTQNPKEADLILINTCSVREKPEKKLF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S +G+   +K    K      + + GC A   GE IL+RS  V+ V+G +   ++ ++L 
Sbjct: 61  SEIGQYAKIKKENAK------IGICGCTASHLGENILKRSKAVDFVLGARNVSKISQILH 114

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           +     RV   D   +D     S       +   +   + I  GCDK CT+C+VP+TRG 
Sbjct: 115 QG----RVAWVDIDYDD-----STYVFSNKQNSSLKGMINISIGCDKQCTYCIVPHTRGN 165

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL-DGEKCTFSDLLYSLSEIKGL 260
           EIS     ++DEA+KL D G  EI LLGQNVN +  +      K  F+ LL  +SEI G+
Sbjct: 166 EISIPTHLILDEAKKLADKGTKEILLLGQNVNNYGRRFSSPHRKINFTQLLREISEIDGI 225

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+T+ HP  M D  I+       +   +H+P+QSGS +IL+ M R ++   +   ++
Sbjct: 226 QRIRFTSPHPLHMDDEFIEEVAKNPKICKAIHMPLQSGSTKILQKMKRGYSKEWFLNRVE 285

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++RS+ P ++IS+D IVGFP E+++DF  T+D+++K+ +   +SF YS R  T  +  LE
Sbjct: 286 KMRSLIPHLSISTDIIVGFPTESEEDFLETLDVLEKVRFDTMYSFIYSTRPHTQAATWLE 345

Query: 381 Q-----VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWL 435
                 VDE +   RL  L+ + +E     N   +G+I  VL E +  +   L GRS   
Sbjct: 346 NNEISLVDEEIAKNRLAILKDRHKEILTQDNAKQIGKIHSVLFESYDAQNMLLEGRSDTN 405

Query: 436 QSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           + + + +  + IG+I  +RI++ K + L GEL+
Sbjct: 406 KLIRVKAGRNLIGEIHSIRISETKGAQLIGELL 438


>gi|167039974|ref|YP_001662959.1| MiaB-like tRNA modifying protein [Thermoanaerobacter sp. X514]
 gi|300914064|ref|ZP_07131380.1| MiaB-like tRNA modifying enzyme [Thermoanaerobacter sp. X561]
 gi|307724703|ref|YP_003904454.1| MiaB-like tRNA modifying enzyme [Thermoanaerobacter sp. X513]
 gi|166854214|gb|ABY92623.1| MiaB-like tRNA modifying enzyme [Thermoanaerobacter sp. X514]
 gi|300888999|gb|EFK84145.1| MiaB-like tRNA modifying enzyme [Thermoanaerobacter sp. X561]
 gi|307581764|gb|ADN55163.1| MiaB-like tRNA modifying enzyme [Thermoanaerobacter sp. X513]
          Length = 449

 Score =  392 bits (1007), Expect = e-107,   Method: Composition-based stats.
 Identities = 132/446 (29%), Positives = 235/446 (52%), Gaps = 15/446 (3%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
            +     + GC++N Y++  M ++F   GYE V+  + AD+ V+NTC +  ++  K    
Sbjct: 14  KKAVAFYTLGCKVNQYETEVMAELFKKAGYEVVDFDEKADVYVINTCTVTNRSDMKSRQE 73

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           + + R       K+  D LVV  GC  Q   EE     P V++ +G +   ++ EL+E  
Sbjct: 74  IRKAR-------KKNPDALVVAVGCYVQVSPEE-AFSLPEVDIAIGTKNKDKIVELVEEF 125

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
               + +    ++  + E        Y       A++ IQ+GC+++CT+C++PY RG   
Sbjct: 126 TQKNQKLSVVNNIMTQKEYEEFGVTAY--TERTRAYIKIQDGCNQYCTYCIIPYARGPVR 183

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR   +V+DE ++  D+G  EI L G ++ ++   G D +     D++  + EI G+ R+
Sbjct: 184 SRDPKKVLDEVKRFADSGYKEIVLTGIHIASY---GKDLKNIGLLDIIKMIHEIDGIKRI 240

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R ++  P  +++  +K   +L  +  + H+ +QSG D  LK M RR+T  EY+ +IDR+R
Sbjct: 241 RLSSIEPTFLTEEFVKEIANLPKMCRHYHVSLQSGCDETLKRMGRRYTTKEYKSVIDRLR 300

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
               D+AI++D +VGFPGET+++F  T   V++I +++   FKYS R GT   N   QV 
Sbjct: 301 EYIKDVAITTDVMVGFPGETEEEFLKTYKFVEEICFSKMHVFKYSRRKGTRAYNFPNQVA 360

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRSPWLQSVVLNS 442
            ++K +R   L +     +  F ++ +G+ +EVL E+  K  +G + G +    S+ +  
Sbjct: 361 NHIKEDRSKKLIELSNRCEYKFMESFIGKTLEVLFEQPVKNMEGYVEGLTDNYLSIAVKG 420

Query: 443 K-NHNIGDIIKVRITDVKISTLYGEL 467
                  +I  V+I ++K + L GE+
Sbjct: 421 DIKLLRNEIFPVKIKEIKDNFLIGEI 446


>gi|312127957|ref|YP_003992831.1| miab-like tRNA modifying enzyme ylig [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311777976|gb|ADQ07462.1| MiaB-like tRNA modifying enzyme YliG [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 440

 Score =  392 bits (1006), Expect = e-107,   Method: Composition-based stats.
 Identities = 131/449 (29%), Positives = 217/449 (48%), Gaps = 17/449 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC  N+ DS  M       G+E  +  +DAD+IV+NTC     A ++    + 
Sbjct: 3   KVGFVSLGCNKNLVDSEIMMGACVKAGFEITSHAEDADVIVVNTCGFINDAKQESIDTIL 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +   KN + K      ++V GC+ Q   +EIL + P V+ ++G +   +LPE+++    
Sbjct: 63  DMAEYKNKKCK-----FLIVTGCLTQRYKDEILEQMPEVDAILGVKEMLKLPEVIKDLYE 117

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           GK+ +             S+            A++ I EGC+  C++C +P  RG   SR
Sbjct: 118 GKQKIKVFDDTSSFVYYSSMPRVIA--TPSYYAYIKIAEGCNNRCSYCSIPLIRGKYTSR 175

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            +  +V EA++L + G  EI L  Q+     G  L G+K   + LL  L +I+ +  +R+
Sbjct: 176 PIEDIVKEAKELAEKGYQEIVLTAQDTT-KYGTDLYGKKMLHA-LLEELEKIEKIKWIRF 233

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
             S+P D+ + LI+       ++ Y  +P+Q  +DRILK MNR+ T    +++I++IR  
Sbjct: 234 LYSYPEDVDENLIEVVKSSSKIVNYFDIPIQHINDRILKLMNRKTTKEGIKRLIEKIRRS 293

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
             ++ I +  +VGFP ETD++F      +    + +  +F YS   GT  S +  QVD+ 
Sbjct: 294 FDEVIIRTTVLVGFPTETDEEFEELCSFLKWAEFDRLGAFMYSQEEGTLASQLP-QVDDE 352

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQS--VV 439
           VK  R   +    R+     N   VG+  EV+IE   K     +GRS    P +    +V
Sbjct: 353 VKQRRYEKVLNIQRKISKRQNKKRVGREYEVVIEAKDK-NNFYIGRSQFEAPEVDGKVLV 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
            + K    G  +KV+I D     L GE++
Sbjct: 412 FSQKKLTAGKFVKVKILDAFEYDLVGEII 440


>gi|328948379|ref|YP_004365716.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Treponema succinifaciens
           DSM 2489]
 gi|328448703|gb|AEB14419.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Treponema succinifaciens
           DSM 2489]
          Length = 460

 Score =  392 bits (1006), Expect = e-107,   Method: Composition-based stats.
 Identities = 139/464 (29%), Positives = 243/464 (52%), Gaps = 27/464 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
            +F ++YGC+MN+ +S  +E +  S+G+++  +   ADL+V+NTC +R  A E+++  LG
Sbjct: 2   TYFFETYGCEMNIAESASVEQILISRGWKKAENAQLADLVVINTCSVRGSAEERIFGRLG 61

Query: 86  RIRNLKN------SRIKEGG-------------DLLVVVAGCVAQAEGEEILRRSPIVNV 126
               LK          K                 L ++V GC+A+   + + ++ P V+ 
Sbjct: 62  FFSGLKKVRSCAPDAKKRNMEIAAEYVQKNGAVPLTLIVMGCMAERLLKSLQKQWPCVDY 121

Query: 127 VVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGC 186
           VVG     +  E+++    G++ + TD      F   S  +G ++       F+ I  GC
Sbjct: 122 VVGTFAKNKFGEIIQAVEEGQKYIQTDEEPVYVFAETSYEEGAFST------FVPIMHGC 175

Query: 187 DKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT 246
           + FC++C+VPY RG E+SR + Q++ E   L   GV EITLLGQNVN+++G         
Sbjct: 176 NNFCSYCIVPYVRGREVSRPVEQILHELDVLARRGVKEITLLGQNVNSYKGADGMNFPNL 235

Query: 247 FSDLLYSLSEIK-GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
              +   L +    +  +R+ +S+P+D SD LI    +   +   LH+ VQ GS+ ILK+
Sbjct: 236 LKTICRHLEQTNSPIEWIRFESSNPKDFSDELIDVIAEEKRICRGLHIAVQHGSNSILKA 295

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           MNR++T  +Y  ++ ++R   P+I +++D ++GFPGET++DF     L+ ++ +  AF +
Sbjct: 296 MNRKYTREQYLLLVQKLRERIPEIQLTTDIMLGFPGETEEDFEQAASLMKEVEFESAFMY 355

Query: 366 KYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK 425
            Y+PR GTP + M  Q+   VK ERL  +            +  VG+ I+VL +   ++ 
Sbjct: 356 YYNPREGTPAAKMQNQIPLEVKKERLQKIIDIQLGITRKVMEKQVGKNIKVLADIISRDN 415

Query: 426 -GKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
             +L+G++   + +   +    IG  ++V I  +  +T  G LV
Sbjct: 416 ANELLGKTEQNERIAFEAPVSLIGKFVQVHIDSLNGNTFKGSLV 459


>gi|313674871|ref|YP_004052867.1| tRNA-i(6)a37 thiotransferase enzyme miab [Marivirga tractuosa DSM
           4126]
 gi|312941569|gb|ADR20759.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Marivirga tractuosa DSM
           4126]
          Length = 488

 Score =  392 bits (1006), Expect = e-107,   Method: Composition-based stats.
 Identities = 153/461 (33%), Positives = 250/461 (54%), Gaps = 24/461 (5%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ +++SYGCQMN  DS  +  +    G++  N  ++AD+I LNTC IREKA   V   L
Sbjct: 35  RKLYIESYGCQMNFSDSEIVTSIMKENGFDTTNDFNNADVIFLNTCSIREKAELTVRKRL 94

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
                +K        ++ + V GC+A+    ++L    IV++V GP +Y  LP L++   
Sbjct: 95  TDFNKVKAR----KPEMQIGVLGCMAERLKTKLLEEEKIVDIVAGPDSYRDLPNLVKTVD 150

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G++ V+T  S E+ +  +S V        GVTAF++I  GCD  C+FCVVP+TRG E S
Sbjct: 151 DGEKAVNTFLSREETYADISPVRLN---SNGVTAFISIMRGCDNMCSFCVVPFTRGRERS 207

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT--------------FSDL 250
           R    +V EA+ L D G  E+TLLGQNV++++       K                F++L
Sbjct: 208 RDPFSIVQEAQDLFDKGYREVTLLGQNVDSYKWSEEINNKARLEKIEKKEEVEVINFANL 267

Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
           +  ++ +   +R+R++TSHP+D++D ++      + +  Y+HLP QSG+ RILK MNR +
Sbjct: 268 IEMVANVSPDLRVRFSTSHPKDITDEVLHTMKKYENICKYIHLPAQSGNSRILKMMNRTY 327

Query: 311 TAYEYRQIIDRIRSVR-PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369
               Y   +D IR++   +  ISSD I GF  ET+++ + T+ L+D + Y  ++ F YS 
Sbjct: 328 DRDWYINRVDAIRNILGEECGISSDMIAGFCSETEEEHQDTLTLMDYVKYDFSYMFFYSE 387

Query: 370 RLGTPGSN-MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGK 427
           R GT       + +    K +RL  +  K RE  +  N   + ++ +VL+E   K  + +
Sbjct: 388 RPGTLAEKRYEDDIPLETKKKRLQEIINKQREYSLERNQLDLNKVHKVLVEGTSKRSEEQ 447

Query: 428 LVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           L GR+   + V+   +N+  GD + V + +   +TL G+ V
Sbjct: 448 LQGRNTANKVVIFPKENYKKGDYVDVFVEECTGATLIGKAV 488


>gi|169831003|ref|YP_001716985.1| MiaB-like tRNA modifying protein YliG [Candidatus Desulforudis
           audaxviator MP104C]
 gi|238065333|sp|B1I310|RIMO_DESAP RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|169637847|gb|ACA59353.1| MiaB-like tRNA modifying enzyme YliG [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 450

 Score =  392 bits (1006), Expect = e-107,   Method: Composition-based stats.
 Identities = 139/449 (30%), Positives = 218/449 (48%), Gaps = 19/449 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R  + S GC  N  D   M  +    GY+    ++ AD+I++NTC   + A ++    + 
Sbjct: 11  RIALVSLGCDKNRVDGEVMLGLLERAGYQITAELE-ADIILVNTCAFIQDAKQESIEAIL 69

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                + +    G   +++  GC+AQ   +E+LR  P ++ VVG     R+ +++ RA  
Sbjct: 70  ETARYRGN----GRCRVLLATGCLAQRYPDELLRDIPELDGVVGTGEVGRVVDIVRRAAT 125

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G+RV +         E L  V  G       TA+L I EGCD  C +CV+P  RG   SR
Sbjct: 126 GERVREVGPPGFLGREVLPRVPSG----SPFTAYLKISEGCDNRCLYCVIPQLRGPYRSR 181

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
             S +V EAR L   G  EI L+ Q+     G  L  E+ + +DL+  L+ ++G+  +R 
Sbjct: 182 EASVLVREARALAARGAREIVLVAQDTT-RYGSDLK-ERTSLTDLVSRLAALEGVAWIRL 239

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
              +P  ++  L++       L  YL +P+Q  SDR+L+ M R   +Y+ R++I  +RS 
Sbjct: 240 LYCYPSGITFELVELMAREPRLCRYLDIPLQHASDRVLRRMGRSTMSYDLRKLILFLRSA 299

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P + I S F+VGFPGET+ DF   +  +  +   +A  F YS   GTP + M +QV   
Sbjct: 300 IPGLTIRSTFMVGFPGETEADFEELLGFLKAMKLDRAGFFAYSREEGTPAARMPDQVPPE 359

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVL- 440
           VK ERL       RE   + N A VG  + VL+E  G++  +  GRS    P +   V  
Sbjct: 360 VKRERLERAAAVQREVSRALNRARVGSEVTVLVE--GRKGEQYYGRSEADAPDIDGRVFL 417

Query: 441 -NSKNHNIGDIIKVRITDVKISTLYGELV 468
             + +   G  ++ RIT      L   ++
Sbjct: 418 SAASDLEPGTFVRARITGAGPYDLRARVL 446


>gi|46579397|ref|YP_010205.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|81404892|sp|Q72DE5|MIAB_DESVH RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|46448811|gb|AAS95464.1| tRNA-i(6)A37 modification enzyme MiaB [Desulfovibrio vulgaris str.
           Hildenborough]
          Length = 449

 Score =  392 bits (1006), Expect = e-107,   Method: Composition-based stats.
 Identities = 174/450 (38%), Positives = 254/450 (56%), Gaps = 18/450 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + F ++++GCQMNV DS  +      +G+      + A L ++NTC +R+K  +KVYS L
Sbjct: 4   RTFHIETFGCQMNVNDSDWLARALMERGFSPAPFGE-ARLTIVNTCSVRDKPEQKVYSLL 62

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GRIR   +       D  V V GCVAQ  G     R P V +V G       P+ L+R  
Sbjct: 63  GRIRQATSK----KPDAFVAVGGCVAQQIGSGFFSRFPQVRLVFGTDGLAMAPQALDRLV 118

Query: 145 FGK--RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
                ++   D+S ED  ER +++  G       + F+ I +GCD FC +C+VPYTRG +
Sbjct: 119 EEPDLKLSLLDFS-EDYPERDAVLGQGAV---PASVFVNIMQGCDNFCAYCIVPYTRGRQ 174

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR+   ++DE R L+D G  EITLLGQNVN++ G+   G+  TF+ LL+ ++ + GL R
Sbjct: 175 KSRATGTILDECRALLDRGAREITLLGQNVNSF-GQDSHGDGTTFAQLLHKVAALPGLER 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LR+ T HP+D++  +++A G L  L P LHLP+Q+GSDRILK M RR+    Y +I+D +
Sbjct: 234 LRFVTPHPKDIAPEVVEAFGTLPNLCPRLHLPLQAGSDRILKLMGRRYDMARYLRIVDDL 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+ RPDI +SSD IVGFPGET++DF  TMD ++ +GYA ++SF YS R GT    + +++
Sbjct: 294 RAARPDIVLSSDIIVGFPGETEEDFMETMDALETVGYAASYSFCYSDRPGTRAEMLPDKL 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG----KLVGRSPWLQSV 438
              VK ERL  LQ              VG+ +EVL+E   ++ G       GR P+   V
Sbjct: 354 SREVKLERLERLQTLQNRLTERCLQDMVGRKVEVLLEGMSRKPGDEGDSWQGRDPYGNLV 413

Query: 439 VL--NSKNHNIGDIIKVRITDVKISTLYGE 466
            +     +   G  + V +   K  +L  E
Sbjct: 414 NVALPQGSDVRGRFLPVVVAQAKKHSLLAE 443


>gi|91088221|ref|XP_973511.1| PREDICTED: similar to CG6345 CG6345-PA [Tribolium castaneum]
 gi|270011824|gb|EFA08272.1| hypothetical protein TcasGA2_TC005903 [Tribolium castaneum]
          Length = 610

 Score =  392 bits (1006), Expect = e-107,   Method: Composition-based stats.
 Identities = 142/485 (29%), Positives = 243/485 (50%), Gaps = 38/485 (7%)

Query: 16  QIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREK 75
           Q +++    ++ +   YGCQMNV D+  +  +     Y + +++ +AD++++ TC IRE 
Sbjct: 102 QDINRYGQKRKVYFDVYGCQMNVNDTEIIWSILQKHNYLKTSNLLEADVVLIVTCAIREG 161

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135
           A  K++  L  +R +  S+        V V GC+A+    ++L ++  V++V GP  Y  
Sbjct: 162 AESKIWGRLEYLRGINKSKATFSSRFKVGVLGCMAERLKHKVLEKNKTVDLVAGPDAYRD 221

Query: 136 LPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
           LP LL      ++ V+   S ++ +  +  V      +  V+AF++I  GCD  CT+C+V
Sbjct: 222 LPRLLALTENDQKSVNVLLSFDETYADIMPVRLN---ENSVSAFVSIMRGCDNMCTYCIV 278

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE------------ 243
           P+TRG E SR +  ++ E   L   GV E+TLLGQNVN++R     G+            
Sbjct: 279 PFTRGKERSRPVDSILREIELLSQQGVKEVTLLGQNVNSYRDLSNSGDIFINNQTNLAKG 338

Query: 244 ----------KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHL 293
                        F+ LL  ++++   +R+R+T+ HP+D  D ++        +   LH+
Sbjct: 339 FKTVYKSKIGGRRFAHLLEKVADVNPEMRIRFTSPHPKDFPDEVLHVIKSRPNICKNLHM 398

Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
           P QSG+  +L+ M R +T   Y +++D IR + P++++SSDFI GF GET+++F  T+ L
Sbjct: 399 PAQSGNTNVLERMRRGYTREAYIELVDHIRYLLPEVSLSSDFICGFCGETEEEFEDTISL 458

Query: 354 VDKIGYAQAFSFKYSPRLGTPGSNML-EQVDENVKAERLLCLQKKLREQQVSFNDACVGQ 412
           ++ + Y  A+ F YS R  T       + V   VK +RL  + +  R      N A +G+
Sbjct: 459 MEMVQYNNAYLFPYSMREKTAAHRRYTDDVPAEVKQKRLERMIQTFRFYAEKLNRAQIGR 518

Query: 413 IIEVLIEKHGKEK-GKLVGRSPWLQSVVLNS-----------KNHNIGDIIKVRITDVKI 460
           +  +LIE   +    +L GR+     VV+ +           K    GD + V+I     
Sbjct: 519 LQLILIEGFSRRSRNQLAGRNDQNIKVVIPAGEVPQKDGRSSKELGPGDYVVVQINAANS 578

Query: 461 STLYG 465
             L G
Sbjct: 579 QILKG 583


>gi|319937480|ref|ZP_08011885.1| 2-methylthioadenine synthetase [Coprobacillus sp. 29_1]
 gi|319807320|gb|EFW03929.1| 2-methylthioadenine synthetase [Coprobacillus sp. 29_1]
          Length = 438

 Score =  392 bits (1006), Expect = e-106,   Method: Composition-based stats.
 Identities = 142/444 (31%), Positives = 236/444 (53%), Gaps = 20/444 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +     + GC++N Y+S  M  +F   GYE V+  D AD+ V+NTC +      K    +
Sbjct: 4   KTVAFLTLGCKVNTYESEAMLKLFHQAGYEAVDFKDKADVYVINTCTVTNTGDSKSRQMI 63

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            +        I++    +V V GC +Q   EE++     V VV+G Q   ++ + +   +
Sbjct: 64  RKA-------IRQNEKAIVCVVGCYSQVASEEVVS-IEGVGVVLGTQFRNQIVDFVNEYK 115

Query: 145 FGKRVV--DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
             ++ V    D     +FE L I +      R   AFL IQ+GC+ FCT+C++PY RG  
Sbjct: 116 TTQKPVIKVADVMKLSRFEDLDIDE----FTRNTRAFLKIQDGCNNFCTYCIIPYARGQI 171

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS-EIKGLV 261
            SR+   V+ +A+ L+D+G  EI L G +     G G D E  +F DLL  L+ +IKGL 
Sbjct: 172 RSRTPESVLKQAQSLVDHGFVEIVLTGIHTA---GYGQDFENYSFYDLLVDLTTKIKGLK 228

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           RLR ++     ++  +I       +++ +LH+P+QSG D  LK MNR +T  E+   +  
Sbjct: 229 RLRISSIEMSQITQEIIDLIAMSPIIVDHLHIPIQSGCDATLKRMNRHYTTAEFSDKLRD 288

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           ++   P +++++D IVGFPGET+++F+ T   ++K+ + Q   F YS R GTP + M +Q
Sbjct: 289 LKEKLPSLSVTTDVIVGFPGETEEEFQQTYQWIEKMHFNQLHVFPYSIRKGTPAARMKDQ 348

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           +D +VK +R+  L    +  Q  F    +G+ +EVLIE+  +   ++VG +     V ++
Sbjct: 349 IDGHVKHDRVKSLMDLSQRLQSEFASYQIGKTLEVLIEE--RHGDRMVGHASNYLKVHVD 406

Query: 442 SKNHNIGDIIKVRITDVKISTLYG 465
             + +IG I +V+I     + L G
Sbjct: 407 LPDSSIGHIYRVKILSQNGTELIG 430


>gi|303288614|ref|XP_003063595.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226454663|gb|EEH51968.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 548

 Score =  392 bits (1006), Expect = e-106,   Method: Composition-based stats.
 Identities = 149/459 (32%), Positives = 241/459 (52%), Gaps = 24/459 (5%)

Query: 8   IGVAHMVSQIVDQCIVPQR--FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLI 65
           +GVA  V++  +     +R   + ++YGCQMNV DS  M  +    GY+  + + DAD+I
Sbjct: 71  VGVAGAVAEAPETPSPRERKNVYTETYGCQMNVNDSEVMLSVLADNGYDTTDDVHDADVI 130

Query: 66  VLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVN 125
           ++NTC IR+KA  K++  L   ++L+  R K     +V V GC+A+    ++L    + +
Sbjct: 131 LINTCAIRDKAEAKIWQRLAYFKSLRRRRKK-NEKPVVGVLGCMAERLKTQLLEADQLAD 189

Query: 126 VVVGPQTYYRLPELLERARF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQE 184
           +V GP  Y  LP L+      G++ ++   SVE+ +  +  V     ++    AF+TI  
Sbjct: 190 LVAGPDAYRDLPNLISAVNSSGEKAMNVQLSVEETYADIVPVR----KEGAHAAFVTIMR 245

Query: 185 GCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-----RGKG 239
           GCD  C+FC+VPYTRG E SR  + +  E R L + GV E+TLLGQNVN++      G G
Sbjct: 246 GCDNACSFCIVPYTRGRERSRDPASIEYEVRLLSEQGVKEVTLLGQNVNSYAYVAEEGAG 305

Query: 240 LDGEK---------CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY 290
            DG             F+ LL  ++ +   +R+R+T+ HP+D  D +++   +   +   
Sbjct: 306 ADGATDFLSKLTGSMQFAALLDRVASVDPEMRVRFTSPHPKDFPDEVLEVIKNRPNVCKC 365

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
           LH+P QSGS   L+ M R +T   Y  +I  +    P  AI++D I GF  ET+++   T
Sbjct: 366 LHMPAQSGSTTTLERMARGYTREAYLDLIKNVHEKIPGCAITTDIITGFCAETEEEHEDT 425

Query: 351 MDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDAC 409
           + L+  + Y QAF F YS R GT  +  M + VD++VK  RL  +    R      N+  
Sbjct: 426 VSLMKLVKYEQAFMFAYSEREGTAAARKMSDDVDDDVKQRRLAEIIDAFRSSASERNERE 485

Query: 410 VGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVLNSKNHNI 447
           +G++   L+E   K+  + L G++   + VV    +  +
Sbjct: 486 IGRVHLCLVEGVSKKNDRELTGKTDTSKWVVFADDDPRL 524


>gi|121729822|ref|ZP_01682255.1| conserved hypothetical protein [Vibrio cholerae V52]
 gi|121628426|gb|EAX60920.1| conserved hypothetical protein [Vibrio cholerae V52]
          Length = 398

 Score =  391 bits (1005), Expect = e-106,   Method: Composition-based stats.
 Identities = 166/369 (44%), Positives = 238/369 (64%), Gaps = 7/369 (1%)

Query: 102 LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK-RVVDTDYSVEDKF 160
           ++ V GCVA  EG+ I  R+P V+V+ GPQT +RLPE++++++     V+D  +   +KF
Sbjct: 1   MIGVGGCVATQEGDSIRDRAPYVDVIFGPQTLHRLPEMIKQSQTSDAPVMDISFPEIEKF 60

Query: 161 ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN 220
           +RL        R  G TAF++I EGC K+CT+CVVPYTRG E+SR +  V+ E  +L + 
Sbjct: 61  DRLP-----EPRAEGPTAFVSIMEGCSKYCTYCVVPYTRGEEVSRPMDDVLFEIAQLAEQ 115

Query: 221 GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKA 280
           GV E+ LLGQNVNA+RG   DG  C+F++LL  ++ I G+ R+R+TTSHP + +D +I  
Sbjct: 116 GVREVNLLGQNVNAYRGATHDGGICSFAELLRLVATIDGIDRIRFTTSHPLEFTDDIIAV 175

Query: 281 HGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFP 340
           + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II ++R  RPDI ISSDFIVGFP
Sbjct: 176 YEDTPELVSFLHLPVQSGSDRILTMMKRPHTAIEYKSIIRKLRKARPDIQISSDFIVGFP 235

Query: 341 GETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLRE 400
           GETD DF+ TM L+  + +  +FSF +SPR GTP ++    + E VK ERL  LQ+++  
Sbjct: 236 GETDKDFQDTMKLIRDVDFDMSFSFIFSPRPGTPAADYPCDLSEEVKKERLYELQQQINS 295

Query: 401 QQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVK 459
           Q + ++   +G    +L+E   K+   +L GR+   + V        IG  + V+I DV 
Sbjct: 296 QAMRYSRLMLGTEQRILVEGPSKKDLMELRGRTENNRVVNFEGSPDLIGQFVDVKIVDVF 355

Query: 460 ISTLYGELV 468
            ++L GEL+
Sbjct: 356 PNSLRGELL 364


>gi|198450948|ref|XP_001358190.2| GA19527 [Drosophila pseudoobscura pseudoobscura]
 gi|198131266|gb|EAL27327.2| GA19527 [Drosophila pseudoobscura pseudoobscura]
          Length = 589

 Score =  391 bits (1005), Expect = e-106,   Method: Composition-based stats.
 Identities = 151/478 (31%), Positives = 244/478 (51%), Gaps = 37/478 (7%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++   + YGCQMN  D+  +  +    GYER   ++DADL++L TC +RE A +K+++ L
Sbjct: 98  RKVHFEVYGCQMNTNDTEVVWSILKQHGYERCQELEDADLVMLVTCAVREGAEQKIWNRL 157

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             +R +K  R  +   L + + GC+A+   E +L +   V+V+ GP +Y  LP LL  +R
Sbjct: 158 RHLRAMKQKRGAKRQPLQLTLLGCMAERLKERLLDQEQCVDVIAGPDSYKDLPRLLAVSR 217

Query: 145 F-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             G   ++   S+++ +  +  V    +     TAF++I  GCD  CT+C+VP+TRG E 
Sbjct: 218 HYGNSAINVLLSLDETYADVMPVRLNSD---SPTAFVSIMRGCDNMCTYCIVPFTRGRER 274

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG------------------LDGEKC 245
           SR L+ +V+E R L   GV E+TLLGQNVN++R KG                        
Sbjct: 275 SRPLASIVNEVRALQVQGVKEVTLLGQNVNSYRDKGAGQTSDTSLVPGFKTVYKPKTGGI 334

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
            FS+LL S++E    +R+R+T+ HP+D SD +++   D   +   LHLP QSG+  +L  
Sbjct: 335 PFSELLQSVAEAVPEMRIRFTSPHPKDFSDEVLRVIRDYPNVCKQLHLPAQSGNTEVLAR 394

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           M R +T   Y ++++ IR + P + +SSDFI GF GET+ +F  T+ L++ + Y  A+ F
Sbjct: 395 MRRGYTREAYLELVEHIREILPTVGLSSDFICGFCGETEAEFEDTISLINTVQYNVAYLF 454

Query: 366 KYSPRLGTPGSNML-EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE 424
            YS R  T       + V   VK  RL  + +  R+     +    G+   +LIE   K 
Sbjct: 455 AYSMREKTTAHRRYVDDVPVAVKTARLQRMVQAFRDGATQLHKNFEGKQQLILIEGKSKR 514

Query: 425 KG-KLVGRSPWLQSVVLNSKNHN-------------IGDIIKVRITDVKISTLYGELV 468
                 GR+     V++ + +               +GD +  +I +     L G  +
Sbjct: 515 SDAHWFGRNDANIKVIVPAMDLPTDTGDAARRRSIAVGDFVVAQIDESNSQVLKGTPL 572


>gi|237752702|ref|ZP_04583182.1| 2-methylthioadenine synthetase [Helicobacter winghamensis ATCC
           BAA-430]
 gi|229376191|gb|EEO26282.1| 2-methylthioadenine synthetase [Helicobacter winghamensis ATCC
           BAA-430]
          Length = 438

 Score =  391 bits (1005), Expect = e-106,   Method: Composition-based stats.
 Identities = 148/452 (32%), Positives = 249/452 (55%), Gaps = 22/452 (4%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++ ++++ GC MN  DS  +       + Y+   +  +ADLI++NTC +REK  +K++
Sbjct: 1   MAKKLYIETLGCAMNERDSAHIIAELEEKESYQLTENPQEADLILINTCSVREKPEKKLF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S +G+   +K    K      + + GC A   G++IL+RS  V+ V+G +   ++ +++ 
Sbjct: 61  SEIGQYAKIKKGDAK------IGICGCTASHLGDKILKRSKAVDFVLGARNVSKISQIIH 114

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           +     RV   D   +D     S      N+   +   + I  GCDK CT+C+VP+TRG 
Sbjct: 115 Q----NRVAWVDIDYDD-----STYVFSQNQHSALKGMINISIGCDKKCTYCIVPHTRGN 165

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC-TFSDLLYSLSEIKGL 260
           EIS     ++ EAR+L ++G  EI LLGQNVN +  +     +   F+ LL  +S+I GL
Sbjct: 166 EISIPSDLILQEARRLAESGTKEILLLGQNVNNYGRRFSGAHRAINFTQLLNEISQINGL 225

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+T+ HP  M D  I        +   +H+P+QSGS  IL+ M R ++   +   ++
Sbjct: 226 ERIRFTSPHPLHMDDEFILEFAQNPKICKAIHMPLQSGSSEILRKMKRGYSKEWFLNRVE 285

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R + P+++I +D IVGFP E++DDF  T+D+++K+ +   +SF YS R  T   + LE
Sbjct: 286 KMRHLIPELSIGTDIIVGFPTESEDDFLETLDVLEKVRFDTLYSFIYSSRPHTEAHHWLE 345

Query: 381 Q-----VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWL 435
                 +DE +  ERL+ L+ + +E     N   VG+I +VL+E +  +   L GRS   
Sbjct: 346 MEQVHLIDEEIAKERLMRLKDRHKEILTQDNAKQVGRIHKVLVESYDAQNLWLEGRSDTN 405

Query: 436 QSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
           + V + +    +G +  VRIT+VK + L GEL
Sbjct: 406 KLVRIKAGRDLVGSLCNVRITEVKGAQLIGEL 437


>gi|282899323|ref|ZP_06307292.1| conserved hypothetical protein [Cylindrospermopsis raciborskii
           CS-505]
 gi|281195780|gb|EFA70708.1| conserved hypothetical protein [Cylindrospermopsis raciborskii
           CS-505]
          Length = 439

 Score =  391 bits (1005), Expect = e-106,   Method: Composition-based stats.
 Identities = 136/448 (30%), Positives = 221/448 (49%), Gaps = 19/448 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
              +   GC+ N  D+  +  M    GY    + D AD +++NTC   E A E+    L 
Sbjct: 6   TIAISHLGCEKNRIDTEHILGMLVEAGYGVDTNEDLADYVIVNTCSFIEAAREESVRTLV 65

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +               +V+AGC+AQ   E++L   P    VVG   Y+ +  +LER   
Sbjct: 66  ELAEANKK---------IVIAGCMAQHFQEQLLEELPEAVAVVGTGDYHNIVNVLERVEK 116

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G+RV     SV+  +              GV A+L + EGCD  C FC++PY RG + SR
Sbjct: 117 GERVKQV--SVDPIYIADENTPRYRTTTEGV-AYLRVAEGCDYGCAFCIIPYLRGKQRSR 173

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           S+  +V EA++L   GV E+ L+ Q +    G  + G+    ++L+ +L E+  +  +R 
Sbjct: 174 SIESIVGEAKQLAAQGVKELILISQ-ITTNYGLDIYGQPK-LAELIRALGEVD-IPWVRM 230

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
             ++P  ++  +IKA  +    +PYL LP+Q     IL++MNR         II+RI++ 
Sbjct: 231 HYAYPTGITPDVIKAIQETANFLPYLDLPLQHSHPEILRAMNRPWQGRVNDGIIERIKTA 290

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P   + + FIVGFPGET + F   ++  ++  +     F +SP  GTP  ++  Q+ + 
Sbjct: 291 LPKAVLRTTFIVGFPGETQEHFDHLLEFTERHQFDHLGVFTFSPEEGTPAYDLPNQLPQE 350

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVLN 441
           +  ER   L +  +   +  N   VG+I++VLIE+   + G L+GRS    P +   V  
Sbjct: 351 LMVERRNQLMEIQQPISLRKNWQQVGKIVDVLIEQENPQTGDLIGRSDRFAPEVDGQVYV 410

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELVV 469
               ++G I+ V+IT      LYGE+V+
Sbjct: 411 QGKASLGTIVPVKITTADAYDLYGEVVM 438


>gi|81301321|ref|YP_401529.1| hypothetical protein Synpcc7942_2512 [Synechococcus elongatus PCC
           7942]
 gi|81323650|sp|Q935Y2|RIMO_SYNE7 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|15620542|gb|AAL03926.1|U30252_14 unknown [Synechococcus elongatus PCC 7942]
 gi|81170202|gb|ABB58542.1| Protein of unknown function UPF0004 [Synechococcus elongatus PCC
           7942]
          Length = 452

 Score =  391 bits (1005), Expect = e-106,   Method: Composition-based stats.
 Identities = 128/449 (28%), Positives = 213/449 (47%), Gaps = 19/449 (4%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
                     GC+ N  D+  M  +    GY    +   AD++V+NTC   + A E+   
Sbjct: 3   AKPTIAFSHLGCEKNRIDTEHMIGLLAEAGYGIDANEALADVVVVNTCSFIQAAREESVR 62

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            L  +               +V+AGC+AQ   +++L   P    +VG   Y+R+ ++L+R
Sbjct: 63  TLVELAE---------SGKKIVIAGCLAQHFQDQLLAELPEAIALVGTGDYHRIVDVLQR 113

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
              G+RV           +        Y       A+L + EGCD  C FC++P+ RG +
Sbjct: 114 TESGERVNAISQEPSFIADENLP---RYRTTTSAVAYLRVAEGCDYRCAFCIIPHLRGKQ 170

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SRS+  +V EA++L   GV E+ L+ Q +    G    G K   ++LL  L ++  +  
Sbjct: 171 RSRSIESIVAEAKQLAAEGVQELVLISQ-ITTNYGLDRYG-KPMLAELLRQLGQVD-VPW 227

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R   ++P  ++  +I A  +   ++PYL LP+Q     ILK+MNR        +II+++
Sbjct: 228 IRIHYAYPTGLTPEVIAAIRETHNVLPYLDLPLQHSHPEILKAMNRPWQGNVNDRIIEKL 287

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           +   PD  + + FI GFPGET++ FR     + +  +     F +SP  GT   ++   V
Sbjct: 288 KEALPDAVLRTTFIAGFPGETEEHFRHLQQFIQRHEFDHVGVFAFSPEEGTAAIDLPNPV 347

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSV 438
            ++VK  R   L    +      N A +G++++VLIE+     G  +GRS    P +  V
Sbjct: 348 PDDVKEARRDALMATQQPIAERRNRAQIGRLVDVLIEQEHPSTGLKIGRSARFAPEVDGV 407

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGEL 467
           V    +  +G ++ VRITD  I  L+GE+
Sbjct: 408 VYVQGDAALGQLVTVRITDADIYDLHGEV 436


>gi|293402175|ref|ZP_06646313.1| 2-methylthioadenine synthetase [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291304282|gb|EFE45533.1| 2-methylthioadenine synthetase [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 433

 Score =  391 bits (1005), Expect = e-106,   Method: Composition-based stats.
 Identities = 133/450 (29%), Positives = 215/450 (47%), Gaps = 26/450 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC  N+ DS +M  M  S  +E V    +A+ I++NTC     A E+  + + 
Sbjct: 2   KIGFISLGCSKNLVDSEKMMGMLKSGHHELVKDAQEAEAIIINTCGFINSAKEEAINTIF 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           ++   K    K      ++V GC+AQ   E +    P ++ V+  + Y  L E+L     
Sbjct: 62  KMAEYKKQNCK-----KLIVVGCLAQRYKETLEAEIPEIDAVISIREYPHLHEILHSLLD 116

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           GK +V    S                  +  TA+L I EGC   CT+C +P  RG  ++ 
Sbjct: 117 GKELVSYGKSERMV------------SSKPWTAYLKIAEGCSNRCTYCAIPLIRGDNVTF 164

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            + Q+V EA++L   GV E+ L+ Q+     G  L G++ +  +LL  L EI G   +R 
Sbjct: 165 PMEQLVQEAKELAQRGVKELVLIAQDTT-KYGVDLYGKR-SLLELLQKLHEIDGFHWIRI 222

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
              +P ++ + LI+    L  ++PY  +P+Q  ++R+L +MNRR T  E   +I +IR  
Sbjct: 223 LYMYPDEIDEDLIEGMAKLPKVLPYFDIPMQHANNRMLAAMNRRGTKEEVLALIKKIRKT 282

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
             D  + + FIVGFP ET +DF   M  V+ + + +  +F YSP   TP   M + V E 
Sbjct: 283 YADPTLRTTFIVGFPSETQEDFDELMQFVEDVHWDRMGAFTYSPEEDTPAFEMEQSVAEE 342

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS-----PWLQS-VV 439
            K  RL  L ++  E  ++     +G ++EVL+E      GK  GR        +   V+
Sbjct: 343 EKQRRLAILMQRQEEISLANQQKRIGTVMEVLVEAQDGLTGKYRGRGANSAPDEVDGMVI 402

Query: 440 LNSKNHN-IGDIIKVRITDVKISTLYGELV 468
             SK    +G  ++V+IT+     + GE +
Sbjct: 403 FTSKQPLALGSFVQVKITEALPHDVIGEAL 432


>gi|312134799|ref|YP_004002137.1| miab-like tRNA modifying enzyme ylig [Caldicellulosiruptor
           owensensis OL]
 gi|311774850|gb|ADQ04337.1| MiaB-like tRNA modifying enzyme YliG [Caldicellulosiruptor
           owensensis OL]
          Length = 440

 Score =  391 bits (1005), Expect = e-106,   Method: Composition-based stats.
 Identities = 128/449 (28%), Positives = 217/449 (48%), Gaps = 17/449 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC  N+ DS  M       G+E  ++  DAD+IV+NTC     A ++    + 
Sbjct: 3   KVGFVSLGCNKNLVDSEIMMGACVKAGFEITSNAKDADVIVVNTCGFINDAKQESIDTIL 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +   KN + K      ++V GC+ Q   +EIL + P ++ ++G +   +LPE+++    
Sbjct: 63  DMAEYKNKKCK-----FLIVTGCLTQRYKDEILEQMPEIDAILGVKEMLKLPEVIKDLYE 117

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           GK+ +             S+            A++ I EGC+  C++C +P+ RG   SR
Sbjct: 118 GKQKIKVFNDASSFVYSSSMPRVIA--TPSYYAYIKIAEGCNNRCSYCSIPFIRGKYTSR 175

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            +  +V EA++L + G  EI L  Q+     G  L G+K     LL  L  I+ +  +R+
Sbjct: 176 PIEDIVKEAKELAEKGYQEIILTAQDTT-KYGIDLYGKKM-LPALLEELEGIEKIKWIRF 233

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
             S+P D+ + LI        ++ Y  +P+Q  +DRILK MNR+ T    +++I++IR  
Sbjct: 234 LYSYPEDLDENLIDVVKSSSKIVNYFDIPIQHINDRILKLMNRKTTKEGIKRLIEKIRRS 293

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
             ++ I +  +VGFP ETD++F      +    + +  +F YS   GTP   +  QVDE+
Sbjct: 294 FDEVVIRTTVLVGFPTETDEEFEELCSFLKWAEFDRLGAFMYSQEEGTPAFKLP-QVDED 352

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQS--VV 439
           +K  R   +    R+     N   VG+  EV+IE   +     +GRS    P +    +V
Sbjct: 353 IKQRRYEKVLNIQRKISKKQNRKRVGKEYEVVIEAKDR-NNFYIGRSQFEAPEVDGKVLV 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
            + K    G+ +KV++ D     L GE++
Sbjct: 412 FSQKKLIAGEFVKVKVLDAFEYDLVGEII 440


>gi|269219570|ref|ZP_06163424.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Actinomyces sp. oral
           taxon 848 str. F0332]
 gi|269210812|gb|EEZ77152.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Actinomyces sp. oral
           taxon 848 str. F0332]
          Length = 496

 Score =  391 bits (1005), Expect = e-106,   Method: Composition-based stats.
 Identities = 160/455 (35%), Positives = 252/455 (55%), Gaps = 35/455 (7%)

Query: 36  MNVYDSLRMEDMFFSQGYERVN------------SMDDADLIVLNTCHIREKAAEKVYSF 83
           MNV+DS R+  +  + GY  V               + AD++V+NTC +RE AA +++  
Sbjct: 1   MNVHDSERLAGLLENAGYVPVAVVPEKAARATDAGDEGADVVVVNTCSVRENAATRLFGN 60

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LG++  +K    +E   + + V GC+AQ     I+ ++P V+ V+G      LP LLERA
Sbjct: 61  LGQLAAVK----RERPGMQIAVGGCLAQQMRGGIIEKAPWVDAVLGTHNLDVLPALLERA 116

Query: 144 RFG-KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           R   +  V+ + S++     L        R+    A+++I  GC+  CTFC+VP+ RG E
Sbjct: 117 RHNAEAAVEIEESLKVFPSTLPT-----RRESAFAAWVSISVGCNNTCTFCIVPHLRGKE 171

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
             R   +V+ E   ++  G  E+TLLGQNVN+  G G  G++  F+ LL +  EI+GL R
Sbjct: 172 RDRRPGEVLAEVEAVVSEGAIEVTLLGQNVNS-YGVGF-GDRQAFAKLLRACGEIEGLER 229

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+T+ HP   SD +I A  +   +MP LH+P+QSGSDR+L++M R + +  +  I+DR+
Sbjct: 230 VRFTSPHPAAFSDEVIAAMAETPSVMPSLHMPLQSGSDRVLRAMRRSYRSSRFLGILDRV 289

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+  P+ AI++D IVGFPGETD+DF AT+D+V++  +A A++F YSPR GTP ++M  QV
Sbjct: 290 RARMPEAAITTDVIVGFPGETDEDFEATLDVVERSRFASAYTFIYSPRPGTPAADMDNQV 349

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKG---KLVGRSPWLQSV 438
           D  V ++R   L           N A  G  +EVLI E  G++     ++ GR+   + V
Sbjct: 350 DPEVVSDRYRRLVALQERISTEENKAKEGSAVEVLISEGEGRKDAETERVSGRAADNRLV 409

Query: 439 VL-------NSKNHNIGDIIKVRITDVKISTLYGE 466
            +              GD+++  +T      L  +
Sbjct: 410 HVALPAGIDAGDRPRPGDMVRAVVTHGAPHHLVAD 444


>gi|113477201|ref|YP_723262.1| MiaB-like tRNA modifying protein YliG [Trichodesmium erythraeum
           IMS101]
 gi|123056314|sp|Q10Y85|RIMO_TRIEI RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|110168249|gb|ABG52789.1| MiaB-like tRNA modifying enzyme YliG [Trichodesmium erythraeum
           IMS101]
          Length = 441

 Score =  391 bits (1004), Expect = e-106,   Method: Composition-based stats.
 Identities = 132/450 (29%), Positives = 218/450 (48%), Gaps = 19/450 (4%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
                     GC+ N  D+  +  +    GYE   + + AD +V+NTC   + A E+   
Sbjct: 3   TKPTIAFTHLGCEKNRIDTEHIIGLLVQAGYEVDANEELADYVVVNTCSFIQAAREESVK 62

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            L  +               +V+AGC+AQ   EE+L   P    +VG   Y+++ ++++R
Sbjct: 63  TLVELAEANKK---------IVIAGCMAQHFPEELLAELPEAIALVGTGDYHKIVDVMQR 113

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
              G RV +         +  +     Y       A++ I EGCD  C FC++P+ RG  
Sbjct: 114 VEKGDRVKEVTAEPTYIADETTP---RYRTTSEGVAYVRIAEGCDYRCAFCIIPHLRGKA 170

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR++  +V EA+KL D GV EI L+ Q +    G  + G+    +DLL +L ++  +  
Sbjct: 171 RSRTIESIVVEAQKLADQGVKEIILISQ-ITTNYGIDIYGQPK-LADLLEALGKVD-IPW 227

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R   ++P  ++  +I A  D   ++PYL LP+Q     IL++MNR         II RI
Sbjct: 228 IRMHYAYPTGLTPKVITAIQDTPNILPYLDLPLQHSHPEILRAMNRPWQGQVNDDIIKRI 287

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           ++  P+  + + FIVGFPGET++     ++ V +  +     F +SP  GTP  N+  Q+
Sbjct: 288 KTAMPNAVLRTSFIVGFPGETEEHHSHLVEFVKRHEFDHVGVFTFSPEEGTPAYNLPNQL 347

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSV 438
            + V   R   + +  +      N   VGQ+++VLIE+   + G+L+GR    SP +  +
Sbjct: 348 PQEVMDARRQEIMEVQQSISWQQNQKLVGQLVDVLIEQENPQTGELIGRSPRFSPEVDGL 407

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           +       +G I+ V ITD  I  LYG L+
Sbjct: 408 IYVKGEARLGCIVPVMITDADIYDLYGCLI 437


>gi|303229106|ref|ZP_07315908.1| MiaB-like protein [Veillonella atypica ACS-134-V-Col7a]
 gi|302516230|gb|EFL58170.1| MiaB-like protein [Veillonella atypica ACS-134-V-Col7a]
          Length = 435

 Score =  391 bits (1004), Expect = e-106,   Method: Composition-based stats.
 Identities = 144/430 (33%), Positives = 238/430 (55%), Gaps = 18/430 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +     + GC++N YD+  M+ +F    YE V+    AD+ V+NTC +     +K    +
Sbjct: 6   KTVAFTTLGCRVNQYDTDAMKGLFLQHDYEAVDFDSKADIYVINTCSVTNMGEKKSRQLI 65

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            + +       ++  D  V+V GC AQ + + I      VN+V+G     ++ EL+E+  
Sbjct: 66  RKAK-------RQNQDAYVIVTGCYAQLDPDAIAA-IDGVNLVIGTNNRSKIVELVEQLE 117

Query: 145 FGKRVVDT--DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
             +R ++   D   E  FE + +     ++ R   AF+ IQEGC+ +C FC++PYTRG  
Sbjct: 118 TTERQINAVRDIMKESNFEEMPLFGNESDKSR---AFMKIQEGCNNYCAFCIIPYTRGKL 174

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR +  +V+EA++L+++G  EI L G ++    G  L G + T +D++ +L EI  L R
Sbjct: 175 KSRKVDDIVNEAKRLVEHGFHEIVLTGIHLG-NYGVELPG-RPTLADVVKALLEIPNLHR 232

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+ +    ++SD LI+       + P+LHLP+Q+GSD +L  M R +T  EY+ +I  +
Sbjct: 233 IRFGSIESVEVSDELIELMATDKRVCPHLHLPLQAGSDHVLTLMKRHYTLQEYKDLIKNL 292

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+  PD++I++D I GFP ETD+DF  TM+ V +IG+    +F YS R GTP + M  QV
Sbjct: 293 RNRIPDLSITTDIIAGFPQETDEDFDETMNTVKEIGFTHIHAFPYSIREGTPAATMPNQV 352

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS-PWLQSVVLN 441
            E VK  R+  L     +   ++  + +G+  E+LIEK  +E G   G +  ++   V +
Sbjct: 353 PEAVKKARVALLNDLSEKGLHAYATSRIGKPGEILIEK--EENGYYTGLTNEYIHGRVKS 410

Query: 442 SKNHNIGDII 451
              H+IGD+I
Sbjct: 411 DGQHSIGDLI 420


>gi|295109889|emb|CBL23842.1| SSU ribosomal protein S12P methylthiotransferase [Ruminococcus
           obeum A2-162]
          Length = 445

 Score =  391 bits (1004), Expect = e-106,   Method: Composition-based stats.
 Identities = 134/448 (29%), Positives = 210/448 (46%), Gaps = 16/448 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC  N+ DS  M  +  + G+E V+S ++AD IV+NTC     A E+  + + 
Sbjct: 2   KILFISLGCDKNLADSEEMLGLLTANGHEIVDSEEEADAIVINTCCFIHDAKEESVNTIL 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +   K    K G    ++V GC+AQ   EEI +  P V+ V+G  +Y  + + L   + 
Sbjct: 62  EMAEYK----KSGTCKALIVTGCMAQRYKEEITQEIPEVDAVLGTTSYGDIVKALNEVQA 117

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G    +      D  E             G   +L I EGCDK CT+C++P  RG   S 
Sbjct: 118 G----NVFQEFRDINELPEDCGHRVITTGGHFGYLKIAEGCDKHCTYCIIPSLRGKFRSV 173

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
              +++ +A  +   GV E+ L+ Q      G  L G+K     L     +I+G+  +R 
Sbjct: 174 PEERLLKQAEYMASQGVRELILVAQETT-VYGTDLYGKKTLHLLLKKL-CQIRGIRWIRV 231

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
              +P ++ D LI+       +  YL LP+Q  SD+IL+ M RR +  +   II ++R  
Sbjct: 232 LYCYPEEIYDELIQVMKAEPKICHYLDLPIQHASDKILRRMGRRTSKQQLIDIITKLRRE 291

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            PDI + +  I GFPGET++D +  M+ VD++ + +   F YSP  GTP   M  QV E 
Sbjct: 292 IPDIVLRTSLITGFPGETEEDHQELMEFVDEMEFDRLGVFTYSPEEGTPAETMEGQVPEE 351

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE----KHGKEKGKLVGRSPWLQSVVLN 441
           VK  R   + +  +E  +   +  +GQ + V+IE          G+  G +P +   +  
Sbjct: 352 VKEARRDEIMELQQEISLDKGNDRIGQEVLVMIEGKVLGESAYIGRTYGDAPKVDGYIFV 411

Query: 442 SKNHNI--GDIIKVRITDVKISTLYGEL 467
                +  GD  KV +T      L GEL
Sbjct: 412 QTGELLVTGDFAKVTVTGALEYDLIGEL 439


>gi|120603047|ref|YP_967447.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Desulfovibrio
           vulgaris DP4]
 gi|120563276|gb|ABM29020.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Desulfovibrio vulgaris
           DP4]
          Length = 476

 Score =  391 bits (1004), Expect = e-106,   Method: Composition-based stats.
 Identities = 175/463 (37%), Positives = 255/463 (55%), Gaps = 21/463 (4%)

Query: 15  SQIVDQCIVP---QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCH 71
           +      I P   + F ++++GCQMNV DS  +      +G+      + A L ++NTC 
Sbjct: 18  ASAQADTIPPMHDRTFHIETFGCQMNVNDSDWLARALMERGFSPAPFGE-ARLTIVNTCS 76

Query: 72  IREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ 131
           +R+K  +KVYS LGRIR           D  V V GCVAQ  G     R P V +V G  
Sbjct: 77  VRDKPEQKVYSLLGRIRQATGK----KPDAFVAVGGCVAQQIGSGFFSRFPQVRLVFGTD 132

Query: 132 TYYRLPELLERARFGK--RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKF 189
                P+ L+R       ++   D+S ED  ER +++  G       + F+ I +GCD F
Sbjct: 133 GLAMAPQALDRLVEEPDLKLSLLDFS-EDYPERDAVLGQGAV---PASVFVNIMQGCDNF 188

Query: 190 CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSD 249
           C +C+VPYTRG + SR+   ++DE R L+D G  EITLLGQNVN++ G+   G+  TF+ 
Sbjct: 189 CAYCIVPYTRGRQKSRATGTILDECRALLDRGAREITLLGQNVNSF-GQDSHGDGTTFAQ 247

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
           LL+ ++ + GL RLR+ T HP+D++  +++A G L  L P LHLP+Q+GSDRILK M RR
Sbjct: 248 LLHKVAALPGLERLRFVTPHPKDIAPEVVEAFGTLPNLCPRLHLPLQAGSDRILKLMGRR 307

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369
           +    Y +I+D +R+ RPDI +SSD IVGFPGET++DF  TM  ++ +GYA ++SF YS 
Sbjct: 308 YDMARYLRIVDDLRAARPDIVLSSDIIVGFPGETEEDFMETMGALETVGYAASYSFCYSD 367

Query: 370 RLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG--- 426
           R GT    + +++   VK ERL  LQ              VG+ +EVL+E   ++ G   
Sbjct: 368 RPGTRAEMLPDKLSREVKLERLERLQTLQNRLTERCLQDMVGKKVEVLLEGMSRKPGDEG 427

Query: 427 -KLVGRSPWLQSVVL--NSKNHNIGDIIKVRITDVKISTLYGE 466
               GR P+   V +     +   G  + V +   K  +L  E
Sbjct: 428 DSWQGRDPYGNLVNVALPQGSDVRGRFLPVVVAQAKKHSLLAE 470


>gi|283853068|ref|ZP_06370324.1| RNA modification enzyme, MiaB family [Desulfovibrio sp. FW1012B]
 gi|283571535|gb|EFC19539.1| RNA modification enzyme, MiaB family [Desulfovibrio sp. FW1012B]
          Length = 446

 Score =  391 bits (1004), Expect = e-106,   Method: Composition-based stats.
 Identities = 173/448 (38%), Positives = 245/448 (54%), Gaps = 16/448 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +F V + GCQMNV D   +     + G+      + ADL +L TC +REK  +KV S LG
Sbjct: 2   KFHVITMGCQMNVGDGDWLTRSLQTTGFTPAPEHE-ADLFILFTCSVREKPEQKVASELG 60

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           RI +      ++  +  V V GCVAQ  G  + RR P+V +V G       P  L R   
Sbjct: 61  RIADRH----RDNPNACVAVGGCVAQQLGTSLWRRFPMVRLVFGTDGIAAAPRALARLAE 116

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKR-GVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
                    S+ D  E     D  +   R    AF++I +GCD +C +C+VP+ RG + S
Sbjct: 117 E---PGLRLSLLDFTESYPERDQSWPEDRLPPRAFVSIMQGCDNYCAYCIVPFVRGRQKS 173

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R  + VV+E R L + GV E+TLLGQNVN+  G    G+  +F+ LL +++ + G+ R+R
Sbjct: 174 RGAAAVVEECRNLAERGVREVTLLGQNVNS-YGLDASGDGTSFARLLDAVAAVPGIARIR 232

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +TTSHP+D+SD +I+  G L  L P LHLPVQSGSDRIL+ M RR+   +YR+++ ++R 
Sbjct: 233 FTTSHPKDLSDDVIERFGSLPQLCPALHLPVQSGSDRILRRMGRRYDTADYRRLVAKLRR 292

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
            RPD+A+++D IVGFPGET+ DF+ T+DLV ++ +   FSF Y  R GT    +  ++  
Sbjct: 293 ARPDLALTTDLIVGFPGETEADFKETLDLVREVRFESGFSFMYGDRPGTASERLEPKIAP 352

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG----KLVGRSPWLQSVV- 439
             KA RL  LQ  L     +   A VG   E+LIE   +  G       GR PW + V  
Sbjct: 353 EAKAARLAELQTLLDAGLTASLAARVGTSAEILIEGPSRRDGAAGPSWRGRDPWGRIVNL 412

Query: 440 -LNSKNHNIGDIIKVRITDVKISTLYGE 466
            L       G I+  RI   K  +L GE
Sbjct: 413 PLPGHGDAAGTIVPARIVQAKKHSLIGE 440


>gi|23099419|ref|NP_692885.1| hypothetical protein OB1964 [Oceanobacillus iheyensis HTE831]
 gi|22777648|dbj|BAC13920.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
          Length = 450

 Score =  390 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 135/438 (30%), Positives = 230/438 (52%), Gaps = 19/438 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
                + GC++N Y++  +  MF  +GYERV+   ++D+ V+NTC +     +K    + 
Sbjct: 3   TVAFHTLGCKVNHYETEGIWRMFKEEGYERVDFDHNSDVYVINTCTVTNSGDKKSRQVIR 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R        I++  D +V V GC AQ    EI+   P V++VVG Q    +   +E  + 
Sbjct: 63  RA-------IRKNPDAVVCVTGCYAQTSPGEIM-EIPGVDIVVGTQDRKNIFSYIEEHQK 114

Query: 146 GKRVVDTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            K  V+   ++     FE + +            A L IQEGC+ FCTFC++P++RG+  
Sbjct: 115 TKEPVNGVSNIMKNRVFEEMDVP----VFTDRTRASLKIQEGCNNFCTFCIIPWSRGLLR 170

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR    V+++A KL+  G  E+ L G +     G G D +   F+ LL  L E++GL R+
Sbjct: 171 SRDPKNVIEQATKLVKAGYKELVLTGIHTA---GYGEDMKDYNFAMLLRELEEVEGLERI 227

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R ++     ++D +I      + ++ +LH+P+QSGSD +L  M R+++   Y++ +++++
Sbjct: 228 RISSIEASQITDEVIDVIDQSNKIVRHLHVPLQSGSDSVLARMRRKYSTSFYKEKVNKLQ 287

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              P +AI+SD IVGFPGET+++F+ T   + +IGYA+   F +S R GTP + M  QV+
Sbjct: 288 KALPGLAITSDVIVGFPGETEEEFQQTYSFIKEIGYAELHVFPFSRRTGTPAARMENQVE 347

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPWLQSVVLN 441
           + +K +R+  L     +    +      +++EV+ E+   E     LVG +     V   
Sbjct: 348 DPIKEKRVHDLIALSDQLAKEYASRYENEVLEVIPEEQVDENQSNTLVGYTDNYMKVQFE 407

Query: 442 SKNHNIGDIIKVRITDVK 459
                IG I+KV++T   
Sbjct: 408 GTPDLIGKIVKVKVTQSG 425


>gi|303232181|ref|ZP_07318884.1| MiaB-like protein [Veillonella atypica ACS-049-V-Sch6]
 gi|302513287|gb|EFL55326.1| MiaB-like protein [Veillonella atypica ACS-049-V-Sch6]
          Length = 431

 Score =  390 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 144/430 (33%), Positives = 238/430 (55%), Gaps = 18/430 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +     + GC++N YD+  M+ +F    YE V+    AD+ V+NTC +     +K    +
Sbjct: 2   KTVAFTTLGCRVNQYDTDAMKGLFLQHDYEAVDFDSKADIYVINTCSVTNMGEKKSRQLI 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            + +       ++  D  V+V GC AQ + + I      VN+V+G     ++ EL+E+  
Sbjct: 62  RKAK-------RQNQDAYVIVTGCYAQLDPDAIAA-IDGVNLVIGTNNRSKIVELVEQLE 113

Query: 145 FGKRVVDT--DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
             +R ++   D   E  FE + +     ++ R   AF+ IQEGC+ +C FC++PYTRG  
Sbjct: 114 TTERQINAVRDIMKESNFEEMPLFGNESDKSR---AFMKIQEGCNNYCAFCIIPYTRGKL 170

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR +  +V+EA++L+++G  EI L G ++    G  L G + T +D++ +L EI  L R
Sbjct: 171 KSRKVDDIVNEAKRLVEHGFHEIVLTGIHLG-NYGVELPG-RPTLADVVKALLEIPNLHR 228

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+ +    ++SD LI+       + P+LHLP+Q+GSD +L  M R +T  EY+ +I  +
Sbjct: 229 IRFGSIESVEVSDELIELMATDKRVCPHLHLPLQAGSDHVLTLMKRHYTLQEYKDLIKNL 288

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+  PD++I++D I GFP ETD+DF  TM+ V +IG+    +F YS R GTP + M  QV
Sbjct: 289 RNRIPDLSITTDIIAGFPQETDEDFDETMNTVKEIGFTHIHAFPYSIREGTPAATMPNQV 348

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS-PWLQSVVLN 441
            E VK  R+  L     +   ++  + +G+  E+LIEK  +E G   G +  ++   V +
Sbjct: 349 PEAVKKARVALLNDLSEKGLHAYATSRIGKPGEILIEK--EENGYYTGLTNEYIHGRVKS 406

Query: 442 SKNHNIGDII 451
              H+IGD+I
Sbjct: 407 DGQHSIGDLI 416


>gi|218437475|ref|YP_002375804.1| MiaB-like tRNA modifying enzyme YliG [Cyanothece sp. PCC 7424]
 gi|238065330|sp|B7KDB6|RIMO_CYAP7 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|218170203|gb|ACK68936.1| MiaB-like tRNA modifying enzyme YliG [Cyanothece sp. PCC 7424]
          Length = 438

 Score =  390 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 133/447 (29%), Positives = 225/447 (50%), Gaps = 19/447 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
              +   GC+ N  DS  M  +    GY    + + AD +++NTC   + A E+    L 
Sbjct: 6   TIAISHLGCEKNRIDSEHMLGLLAQAGYPVDANEELADYVIVNTCSFIQSAREESVRTLV 65

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +               V+++GC+AQ   +E+L   P    +VG   Y ++ ++++R   
Sbjct: 66  ELAEANKK---------VIISGCMAQHFQDELLSELPEAVAIVGTGDYQKIVQVIQRVEN 116

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G+RV +   S E  +     V        GV A+L + EGCD  C+FC++P+ RG + SR
Sbjct: 117 GQRVKEI--SSEPTYIADETVPRYRTTSEGV-AYLRVAEGCDYRCSFCIIPHLRGNQRSR 173

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           ++  +V EA++L D GV E+ L+ Q +    G  L GE    + LL +L E+  +  +R 
Sbjct: 174 TIESIVREAQQLADQGVQELILISQ-ITTNYGLDLYGEPK-LAQLLQALGEVD-IPWIRI 230

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
             ++P  ++  +I+A  +   ++PYL LP+Q     ILK MNR         II+RI+  
Sbjct: 231 HYAYPTGLTPKVIEAIRETPNVLPYLDLPLQHSHPDILKRMNRPWQGRVNDSIIERIKDA 290

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P   + + FIVGFPGET++ +   ++ V +  +     F +SP   TP  +M  Q+ + 
Sbjct: 291 IPKAVLRTTFIVGFPGETEEHYAHLVEFVKRHEFDHVGVFTFSPEEETPAYHMANQIPQE 350

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVLN 441
           +  +R   + +  +   +  N AC+G I++VLIE+   + G+ +GRS    P +  +V  
Sbjct: 351 IMEQRRDTIMQIQQPISLQKNCACIGDIVDVLIEQENPDTGQFIGRSARFAPEVDGLVYV 410

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
               ++G II V+I D  I  LYGE++
Sbjct: 411 EGEASLGTIIPVKIKDADIYDLYGEVI 437


>gi|315651497|ref|ZP_07904518.1| 2-methylthioadenine synthetase [Eubacterium saburreum DSM 3986]
 gi|315486232|gb|EFU76593.1| 2-methylthioadenine synthetase [Eubacterium saburreum DSM 3986]
          Length = 440

 Score =  390 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 128/449 (28%), Positives = 220/449 (48%), Gaps = 16/449 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +  + S GC  N  DS  M  +   +G+E  +  ++AD++++NTC   + A E+  + + 
Sbjct: 2   KMSMVSLGCDKNTVDSEMMLGLMNEKGFEYTDIDEEADVMIINTCGFIQSAKEESINAIL 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
               LK      G    ++V GC+AQ   +EI++  P V+ ++G  ++ ++ E +E    
Sbjct: 62  EASKLKE----VGNLKALIVTGCLAQRYKDEIIKEIPEVDALLGTSSFDKIVETVEEVLG 117

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G+  +  ++   D+    SI     N   G  A+L I EGC+K CT+C++P  RG   S 
Sbjct: 118 GE--IKNEFLDLDRLP--SISKKRKNSTGGYYAYLKIAEGCNKNCTYCIIPSLRGNYRSY 173

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            L  ++ +A+ L   G+ E+ L+ Q      G  + G+K T   LL  L++I+G+  +R 
Sbjct: 174 PLDDLIAQAKDLATQGIKELILVAQETT-LYGVDIYGKK-TLPKLLKELAKIEGIEWIRI 231

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
              +P +++D LI      D +  YL +P+Q  SD IL+ M RR T  +   II R+R+ 
Sbjct: 232 LYCYPEEITDELIDVIASEDKVCKYLDIPIQHASDNILRRMARRTTYDDLVNIIGRLRNN 291

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            PDI + +  I GFPGET +D    ++ + ++ + +   F YS   GT  +    Q+DE 
Sbjct: 292 IPDITLRTTIIAGFPGETVEDVDTVIEFIKQMKFERLGVFTYSEEEGTVAAGFDNQIDEK 351

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVLN 441
            K  R   + +  +E      +  VG+   VLIE    ++   +GR+    P +   V  
Sbjct: 352 EKEARRDRIMRVQQEISEKNLERKVGKTFRVLIEGKLPDENVYIGRTYMDVPGVDGYVFV 411

Query: 442 S--KNHNIGDIIKVRITDVKISTLYGELV 468
           +  + +  GD   V IT      L G+ +
Sbjct: 412 NTEREYMSGDFCDVLITGSSEYDLIGDAL 440


>gi|229890688|sp|A1VF04|MIAB_DESVV RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
          Length = 449

 Score =  390 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 173/450 (38%), Positives = 252/450 (56%), Gaps = 18/450 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + F ++++GCQMNV DS  +      +G+      + A L ++NTC +R+K  +KVYS L
Sbjct: 4   RTFHIETFGCQMNVNDSDWLARALMERGFSPAPFGE-ARLTIVNTCSVRDKPEQKVYSLL 62

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GRIR           D  V V GCVAQ  G     R P V +V G       P+ L+R  
Sbjct: 63  GRIRQATGK----KPDAFVAVGGCVAQQIGSGFFSRFPQVRLVFGTDGLAMAPQALDRLV 118

Query: 145 FGK--RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
                ++   D+S ED  ER +++  G       + F+ I +GCD FC +C+VPYTRG +
Sbjct: 119 EEPDLKLSLLDFS-EDYPERDAVLGQGAV---PASVFVNIMQGCDNFCAYCIVPYTRGRQ 174

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR+   ++DE R L+D G  EITLLGQNVN++ G+   G+  TF+ LL+ ++ + GL R
Sbjct: 175 KSRATGTILDECRALLDRGAREITLLGQNVNSF-GQDSHGDGTTFAQLLHKVAALPGLER 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LR+ T HP+D++  +++A G L  L P LHLP+Q+GSDRILK M RR+    Y +I+D +
Sbjct: 234 LRFVTPHPKDIAPEVVEAFGTLPNLCPRLHLPLQAGSDRILKLMGRRYDMARYLRIVDDL 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+ RPDI +SSD IVGFPGET++DF  TM  ++ +GYA ++SF YS R GT    + +++
Sbjct: 294 RAARPDIVLSSDIIVGFPGETEEDFMETMGALETVGYAASYSFCYSDRPGTRAEMLPDKL 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG----KLVGRSPWLQSV 438
              VK ERL  LQ              VG+ +EVL+E   ++ G       GR P+   V
Sbjct: 354 SREVKLERLERLQTLQNRLTERCLQDMVGKKVEVLLEGMSRKPGDEGDSWQGRDPYGNLV 413

Query: 439 VL--NSKNHNIGDIIKVRITDVKISTLYGE 466
            +     +   G  + V +   K  +L  E
Sbjct: 414 NVALPQGSDVRGRFLPVVVAQAKKHSLLAE 443


>gi|4929773|gb|AAD34147.1|AF152097_1 CGI-05 protein [Homo sapiens]
          Length = 554

 Score =  390 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 152/490 (31%), Positives = 248/490 (50%), Gaps = 54/490 (11%)

Query: 17  IVDQCI-VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREK 75
           ++D+ +   ++ ++++YGCQMNV D+     +    GY R      AD+I+L TC IREK
Sbjct: 52  MMDELLGRQRKVYLETYGCQMNVNDTEIAWSILQKSGYLR-PVTSRADVILLVTCSIREK 110

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135
           A + +++ L +++ LK  R +    L + + GC+A+   EEIL R  +V+++ GP  Y  
Sbjct: 111 AEQTIWNRLHQLKALKTRRPRSRVPLRIGILGCMAERLKEEILNREKMVDILAGPDAYRD 170

Query: 136 LPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
           LP LL  A  G++  +   S+++ +  +  V          +AF++I  GCD  C++C+V
Sbjct: 171 LPRLLAVAESGQQAANVLLSLDETYADVMPVQTS---ASATSAFVSIMRGCDNMCSYCIV 227

Query: 196 PYTRGIEISRSLSQVVDEARKLIDN--------------GVCEITLLGQNVNAWRG---- 237
           P+TRG E SR ++ +++E +KL +               G+ E+TLLGQNVN++R     
Sbjct: 228 PFTRGRERSRPIASILEEVKKLSEQVFLPPRPPKVLGLQGLKEVTLLGQNVNSFRDNSEV 287

Query: 238 -----------KGLDGEKCT------FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKA 280
                      +G      T      F+ LL  +S +   +R+R+T+ HP+D  D +++ 
Sbjct: 288 QFNSAVPTNLSRGFTTNYKTKQGGLRFAHLLDQVSRVDPEMRIRFTSPHPKDFPDEVLQL 347

Query: 281 HGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFP 340
             + D +   +HLP QSGS R+L++M R ++   Y +++  IR   P +++SSDFI GF 
Sbjct: 348 IHERDNICKQIHLPAQSGSSRVLEAMRRGYSREAYVELVHHIRESIPGVSLSSDFIAGFC 407

Query: 341 GETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLR 399
           GET++D   T+ L+ ++ Y   F F YS R  T     + + V E VK  RL  L    R
Sbjct: 408 GETEEDHVQTVSLLREVQYNMGFLFAYSMRQKTRAYHRLKDDVPEEVKLRRLEELITIFR 467

Query: 400 EQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVLNSKN------------HN 446
           E+    N   VG    VL+E   K     L GR+     V+                   
Sbjct: 468 EEATKANQTSVGCTQLVLVEGLSKRSATDLCGRNDGNLKVIFPDAEMEDVNNPGLRVRAQ 527

Query: 447 IGDIIKVRIT 456
            GD + V+IT
Sbjct: 528 PGDYVLVKIT 537


>gi|315638402|ref|ZP_07893580.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Campylobacter upsaliensis
           JV21]
 gi|315481530|gb|EFU72156.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Campylobacter upsaliensis
           JV21]
          Length = 433

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 153/446 (34%), Positives = 243/446 (54%), Gaps = 18/446 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ F+++ GC MNV DS  +       + Y     + +ADLI++NTC +REK   K++S 
Sbjct: 4   KKLFIQTLGCAMNVRDSEHIIAELTQKENYSLTEDIKEADLILINTCSVREKPVHKLFSE 63

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G    +K    K      + V GC A   GEEI RR+P V+ V+G +   ++ + ++  
Sbjct: 64  VGGFEKVKKKGAK------IGVCGCTASHLGEEIFRRAPYVDFVLGARNISKITQAVKTP 117

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           +F    +D D S     +          R     +++ I  GCDK CT+C+VP+TRG EI
Sbjct: 118 KFVGVDLDYDESEFAFSDF---------RNSPYKSYINISIGCDKHCTYCIVPHTRGDEI 168

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG-EKCTFSDLLYSLSEIKGLVR 262
           S     + +EA+K ++ G  EI LLGQNVN +  +  +  +K  FSDLL +LSEI+ L R
Sbjct: 169 SIPFELIYNEAKKAVEKGAKEIFLLGQNVNNYGKRFRNAHKKMDFSDLLNALSEIENLRR 228

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+T+ HP  M D  ++     + +   +H+P+QSGS  ILK+M R ++   Y     ++
Sbjct: 229 IRFTSPHPLHMDDKFLQTFSQNEKICKAMHMPLQSGSSEILKAMKRGYSKEWYLDRALKL 288

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R +  D++IS+D IV FPGE++ DF  T+D+++K+ + Q FSFKYS R  T  + M  Q+
Sbjct: 289 RELCKDVSISTDIIVAFPGESEKDFEDTLDVLEKVRFEQIFSFKYSKRPLTKAATMQGQI 348

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
            E++ + RL  LQ +  E           Q  EVL E+  +    + GR+     V +  
Sbjct: 349 PEDIASRRLSFLQNRHAEILDEITKKQENQTFEVLFEEL-RANNAVAGRTDNNFLVQIQG 407

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
               +G + +V+IT+ K   LYGE+V
Sbjct: 408 SEEMLGTMKQVKITNAKRMVLYGEIV 433


>gi|301168365|emb|CBW27955.1| radical SAM-superfamily protein [Bacteriovorax marinus SJ]
          Length = 458

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 143/454 (31%), Positives = 238/454 (52%), Gaps = 15/454 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +  F  S GC  N+ DS  M       G++ V   D A++IV+NTC   E A ++    +
Sbjct: 9   RTVFFTSLGCSKNLVDSQVMLGYMGLDGFKVVPEPDSAEVIVVNTCSFVEAAKQESIETI 68

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             + + K+   ++G    +VV+GC+AQ   +++    P V++ +G   Y ++  LL +A 
Sbjct: 69  LDLADYKD--TEQGNCKALVVSGCMAQRYSDQLEESLPEVDMFIGTGEYNKIVPLL-KAL 125

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
              ++    +    KF      D   N     TA+L I EGC++ CTFC++P  RG   S
Sbjct: 126 EDNKLEKKSFVEIPKFIHTE-FDPRLNTSPFYTAWLKISEGCNRNCTFCIIPTLRGRLRS 184

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           RS+  +V EA+KL ++GV E+ L+ Q++ +  G  LD E     +LL  L  ++G+  +R
Sbjct: 185 RSVESLVTEAQKLSESGVRELNLISQDL-SDYGVDLD-ENNNLHELLNGLETVEGIDWVR 242

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
               +P +++D +I+   +   +  YL +PVQ  S+ +LK MNRR T  E    ++R+R 
Sbjct: 243 LFYFYPDELTDEVIEQMRNSKKICSYLDMPVQHFSNNVLKRMNRRITGAEIMNRVERLRE 302

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             P I + +  IVGFPGE+D+DF+  ++ V K  +     F+YS   GTP   +  +VD+
Sbjct: 303 RIPGIVLRTSIIVGFPGESDEDFQELLEGVKKARFNHLGIFRYSDEEGTPAYRLKGKVDQ 362

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-----GKLVGRSPWLQS-V 438
               +R   L +  RE     N    GQ+I+VLIE   +E      G+ +G++P +   V
Sbjct: 363 ETIDDRFDQLFETQREIVRELNAKYEGQLIDVLIEGQHEETELLIQGRHIGQAPDIDGKV 422

Query: 439 VLNS---KNHNIGDIIKVRITDVKISTLYGELVV 469
           ++N    ++   GD++KV IT+V    L G +V+
Sbjct: 423 IINDSDIEDLKAGDLVKVEITEVLDYDLVGRVVL 456


>gi|328872998|gb|EGG21365.1| hypothetical protein DFA_01246 [Dictyostelium fasciculatum]
          Length = 636

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 156/495 (31%), Positives = 250/495 (50%), Gaps = 51/495 (10%)

Query: 17  IVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA 76
             +     +  FV+SYGCQMN  D+  +  +    GY   +S   AD+I LNTC IRE A
Sbjct: 123 TANTTGDGRSVFVESYGCQMNFADTEVIYAVMKQSGYIIADSAKSADVIFLNTCAIRENA 182

Query: 77  AEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL 136
            +K++  L  +R  K  +  +GG++++ V GC+A+   +++L     V++VVGP  Y  L
Sbjct: 183 EDKIWFRLTELRKQKRVKRSQGGNMVIGVLGCMAERLKQKLLDSKNSVDLVVGPDAYRSL 242

Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
           P LL R   G+  ++   S ++ +  ++ V        G+ A+++I  GC+  C++C+VP
Sbjct: 243 PALLGRIEDGQTAINVMLSADETYADIAPVRHD---SNGLCAYVSIMRGCNNMCSYCIVP 299

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-RGKGLDGEKC---------- 245
           +TRG E SR L  ++DE ++L   G  EITLLGQNVN++    G+D E            
Sbjct: 300 FTRGRERSRPLESILDEVKQLSKTGYKEITLLGQNVNSYNYIPGVDAETSSEQVEQKDNK 359

Query: 246 -----------------------TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHG 282
                                  TF++L+ ++S +   +R+R+T+ HP+D  D LI+   
Sbjct: 360 MEKEKLQPREGFNTIYKSPKKGITFTELMDAVSLVDPEMRVRFTSPHPKDFPDSLIELVK 419

Query: 283 DLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGE 342
               +    H+P QSG+  +L+ M R +T   Y ++ID I+   PD +ISSDFI GF GE
Sbjct: 420 VRPNICRQFHIPAQSGNSDVLERMRRGYTRESYIELIDLIKRELPDCSISSDFISGFCGE 479

Query: 343 TDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN-MLEQVDENVKAERLLCLQKKLREQ 401
           T+ + R T+ L++ +GY  A+ F YS R  T     M + V E+VKA RL  +     + 
Sbjct: 480 TEQEHRDTISLMEYVGYENAYMFAYSLREKTHAHRSMKDDVTEDVKARRLKEVIDTYYKC 539

Query: 402 QVSFNDACVGQIIEVLIEKHGKEKG-KLVGRSPWLQSVVLN------------SKNHNIG 448
               +   +G+   VL+E+  +  G   VGR+   +  ++             S    +G
Sbjct: 540 IREKSKDELGKKHLVLVERQSRRSGDHFVGRTDSNKKCIVPMIDVTDPTNNNESTPIKLG 599

Query: 449 DIIKVRITDVKISTL 463
           D + V I D    TL
Sbjct: 600 DYVMVEIIDGSDITL 614


>gi|227486728|ref|ZP_03917044.1| 2-methylthioadenine synthetase [Anaerococcus lactolyticus ATCC
           51172]
 gi|227235316|gb|EEI85331.1| 2-methylthioadenine synthetase [Anaerococcus lactolyticus ATCC
           51172]
          Length = 432

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 135/447 (30%), Positives = 241/447 (53%), Gaps = 18/447 (4%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           +   + + + GC++N Y+S  +E++F ++G+ER  +  +A + V+NTC +   +  K   
Sbjct: 1   MKNTYNIITLGCKVNQYESEAVEEIFKARGFERKEN--NASVYVINTCTVTNMSDRKSRQ 58

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            + R R       K+  D ++ V GC +Q + E++  +   V++++G +    + +L E 
Sbjct: 59  MISRAR-------KDNPDAIIAVMGCYSQVKPEDVA-KIEGVDIILGSRNKEEVVDLCED 110

Query: 143 ARFGKRVVDTDYSV--EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
               K  +D   SV  E  FE L I     N+     A++ IQ+GC+ +C++C++PY RG
Sbjct: 111 MLQNKEAIDQVISVSEEKSFEDLEIS----NQTEMTRAYMKIQDGCNMYCSYCLIPYARG 166

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
             +SR +  +V EA +L +NG  EI L G +V ++     DG   +  D++ +++++ G+
Sbjct: 167 NVVSRPMDSIVKEAERLAENGFKEIVLTGIHVASYGKDFKDG--ISLIDVIENVAKVDGI 224

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R ++  PR ++   ++          + HL +QSGSD +L++MNR++    +++  D
Sbjct: 225 KRIRLSSMEPRHITRDFLERMKATKKACDHFHLSLQSGSDDVLRAMNRKYDTKVFKEKTD 284

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
            IR + P+  +++D IVGFPGET+ + + TM  V +I +A+   FKYS R GT  + M  
Sbjct: 285 LIREIFPNAGLTTDIIVGFPGETEANHQETMAFVKEIKFAKTHLFKYSKRDGTRAATMKG 344

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440
           QVD NVK ERL  L+   +  +  F +  VG+ + VL E+     G   G S     V +
Sbjct: 345 QVDGNVKKERLKDLEAIEKTNREKFLENQVGKTLSVLFEEKSDMAGFKSGYSTNYLRVNV 404

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGEL 467
            + +    +I  V+IT +    L GE+
Sbjct: 405 ENPSLPTNEIYDVKITGLINDELIGEI 431


>gi|224541752|ref|ZP_03682291.1| hypothetical protein CATMIT_00924 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525356|gb|EEF94461.1| hypothetical protein CATMIT_00924 [Catenibacterium mitsuokai DSM
           15897]
          Length = 435

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 146/445 (32%), Positives = 238/445 (53%), Gaps = 20/445 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
                + GC++N Y+S  M ++F  +GYE ++    AD+ V+NTC +      K    + 
Sbjct: 3   TVAFHTLGCKVNSYESEAMLEIFKKRGYETIDFESPADVYVINTCTVTNTGDSKSRQMIR 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           +         +   + ++ V GC +Q   EEI      V+VV+G Q    + + +E  + 
Sbjct: 63  KAH-------RTNPEAVICVVGCYSQVASEEITG-IEGVSVVLGTQHRASIVDFVEEYKS 114

Query: 146 GKRVVDTDYSVED--KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             + +    +V    +FE LSI    +  +    AFL IQ+GC+ FCT+C++PY RG   
Sbjct: 115 THKQIVKIENVMKVSRFEDLSI----HAFENKTRAFLKIQDGCNNFCTYCIIPYARGGVR 170

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS-EIKGLVR 262
           SR    V+ +A++L+D G  EI L G +     G G+D E  +F DLL  L+ +IKGL R
Sbjct: 171 SRPKEDVLRQAQELVDRGFVEIVLTGIHTA---GYGVDLENYSFYDLLVDLTTKIKGLKR 227

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LR ++     +SD +I+  G   +++ +LH+P+QSG+D IL+ M R +   E+ +    +
Sbjct: 228 LRISSIEMSQVSDEIIELIGKSPIIVDHLHIPIQSGTDSILRRMARHYNTAEFEKKYFEL 287

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           +   P I+I++D IVGFPGET++DF  T + + K+ + Q   F YS R GTP   M  QV
Sbjct: 288 KEALPGISITTDVIVGFPGETEEDFVDTYNWIKKLHFNQLHVFPYSRRRGTPADRMPSQV 347

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
             +VK ER+  L K   E +  F  + + + +EVLIE+  ++ G +VG +     V++  
Sbjct: 348 PGDVKKERVRRLLKLSDELKTEFALSEMNKELEVLIEE--EKDGYMVGHASNYLKVLVAD 405

Query: 443 KNHNIGDIIKVRITDVKISTLYGEL 467
            +   G I KV++TD +   L G +
Sbjct: 406 TSLKEGHIYKVKVTDHRGYDLIGVV 430


>gi|238066628|sp|Q5N1N6|RIMO_SYNP6 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
          Length = 452

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 128/449 (28%), Positives = 212/449 (47%), Gaps = 19/449 (4%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
                     GC+ N  D+  M  +    GY    +   AD++V+NTC   + A E+   
Sbjct: 3   AKPTIAFSHLGCEKNRIDTEHMIGLLAEAGYGIDANEALADVVVVNTCSFIQAAREESVR 62

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            L  +               +V+AGC+AQ   +++L   P    +VG   Y+R+ ++L+R
Sbjct: 63  TLVELAE---------SGKKIVIAGCLAQHFQDQLLAELPEAIALVGTGDYHRIVDVLQR 113

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
              G+RV           +        Y       A+L + EGCD  C FC++P+ RG  
Sbjct: 114 TESGERVNAISQEPSFIADENLP---RYRTTTSAVAYLRVAEGCDYRCAFCIIPHLRGKR 170

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SRS+  +V EA++L   GV E+ L+ Q +    G    G K   ++LL  L ++  +  
Sbjct: 171 RSRSIESIVAEAKQLAAEGVQELVLISQ-ITTNYGLDRYG-KPMLAELLRQLGQVD-VPW 227

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R   ++P  ++  +I A  +   ++PYL LP+Q     ILK+MNR        +II+++
Sbjct: 228 IRIHYAYPTGLTPEVIAAIRETHNVLPYLDLPLQHSHPEILKAMNRPWQGNVNDRIIEKL 287

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           +   PD  + + FI GFPGET++ FR     + +  +     F +SP  GT   ++   V
Sbjct: 288 KEALPDAVLRTTFIAGFPGETEEHFRHLQQFIQRHEFDHVGVFAFSPEEGTAAIDLPNPV 347

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSV 438
            ++VK  R   L    +      N A +G++++VLIE+     G  +GRS    P +  V
Sbjct: 348 PDDVKEARRDALMATQQPIAERRNRAQIGRLVDVLIEQEHPSTGLKIGRSARFAPEVDGV 407

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGEL 467
           V    +  +G ++ VRITD  I  L+GE+
Sbjct: 408 VYVQGDAALGQLVTVRITDADIYDLHGEV 436


>gi|255072327|ref|XP_002499838.1| radical SAM protein with TRAM and UPF0004 domains [Micromonas sp.
           RCC299]
 gi|226515100|gb|ACO61096.1| radical SAM protein with TRAM and UPF0004 domains [Micromonas sp.
           RCC299]
          Length = 507

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 149/492 (30%), Positives = 255/492 (51%), Gaps = 51/492 (10%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + +R ++++YGCQMNV DS  +  +  +  Y+  ++ +DAD I++NTC IR+ A  K+++
Sbjct: 1   MRRRAYIETYGCQMNVSDSEIVASVLGASDYDLTDTHEDADAILVNTCAIRDGAEAKIWA 60

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            L +++ +K          +V V GC+ +    ++L    + ++V GP  Y  LP L++ 
Sbjct: 61  RLRQLKAVKR-DRDVRPAPVVGVLGCMGERLKGKLLEADGLADLVAGPDAYRDLPRLIDA 119

Query: 143 ARFGKR---VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           AR G      ++T  S+E+ +  ++ V        G +AF++I  GC+  C FC+VP+TR
Sbjct: 120 ARGGGDQGLAINTQLSLEETYADIAPVRRSDA---GPSAFVSIMRGCNNMCAFCIVPFTR 176

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW--------------------RGKG 239
           G E SR    ++DE R+L D G  E+TLLGQNVN++                        
Sbjct: 177 GRERSRPRGSILDEVRRLSDEGCKEVTLLGQNVNSYADTKTSDAFERYYAPGFKSVYKPR 236

Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
            DG    F++LL +++++   +R+R+T+ HP+D  D +++       +   LH+P QSGS
Sbjct: 237 RDGA-VRFAELLDAVADVDPEMRVRFTSPHPKDFPDEVLRVIASRANVAKQLHMPAQSGS 295

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
             +L+ M R +T   Y  +++R R     +A+SSDFI GF GET+++   T+ L+  +GY
Sbjct: 296 SSVLERMRRGYTREAYLDLVERARRDILGVALSSDFISGFCGETEEEHADTVSLMKAVGY 355

Query: 360 AQAFSFKYSPRLGTPGSN-MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI 418
            +AF F YS R  T  +  + + V E+VK  RL  +    R+   + N   +G++  VL+
Sbjct: 356 EKAFMFAYSMRDKTAAARHLTDDVPEDVKKRRLAEVIDAQRKGAEAANAREIGRVHCVLV 415

Query: 419 EKHGKEKG-KLVGRSPWLQSVVLNS--------------KNHNI-------GDIIKVRIT 456
           E   K    ++ GR+   + V+++                N +        GD + VRI 
Sbjct: 416 EGESKRSDERMSGRTCTNKRVIIDGVDTFAEYSPSSSSSGNDSPAVVGIHSGDYVAVRID 475

Query: 457 DVKISTLYGELV 468
               +TLYG  +
Sbjct: 476 RAGANTLYGTPL 487


>gi|300088213|ref|YP_003758735.1| MiaB family RNA modification protein [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
 gi|299527946|gb|ADJ26414.1| RNA modification enzyme, MiaB family [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
          Length = 417

 Score =  390 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 156/447 (34%), Positives = 247/447 (55%), Gaps = 35/447 (7%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           +P ++ + + GCQMN  ++ R+  +   +G+  V   +DADL++L +C +R+ A E++ +
Sbjct: 1   MP-KYHIFTIGCQMNQAEAERLGSLMELKGFSGVEKPEDADLVLLVSCAVRQSAEERIIN 59

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            L  +  LK     +   L V + GC+   +   + R  P+V+   G       P+ L+ 
Sbjct: 60  RLAVLNKLKQ----DRPGLKVALTGCMVDEDPSAMRRTYPMVDYFFGAGQM---PDFLDE 112

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
                                 I       K GVTAF+ I +GCD FC++C+VPY RG E
Sbjct: 113 ----------------------IPPMILPGKPGVTAFVPIIQGCDNFCSYCIVPYRRGRE 150

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR+L ++  E  +L+  GV E+TLLGQNVNAW G  L G+    +DLL SLS  +GL+R
Sbjct: 151 RSRTLEELQAELTELVSRGVREVTLLGQNVNAW-GHDLPGQP-DLADLLTSLSRQEGLLR 208

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LR+ T+HP+DMS+ L+++  +LD + P ++LPVQ+G DR+L+ M R +TA EY  ++ R+
Sbjct: 209 LRFLTNHPKDMSERLMRSLAELDKVCPAVNLPVQAGDDRVLELMRRGYTAGEYLDLVKRL 268

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQ 381
           R   P +A+++D IVGFPGET+  F+ T  L++++ +       YSPR GT  +    + 
Sbjct: 269 RQAVPGLALTTDIIVGFPGETEAQFQNTRSLMEQVRFDAVHLAVYSPRPGTEAAEKYPDD 328

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           V  + K+ RL  L++         N A  G+ +EVL+E   +  G+  GR    + V   
Sbjct: 329 VPRDQKSRRLAELERLQARIAGEINAALTGETVEVLVENQNR--GRWRGRDIRGKLVFFE 386

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
           S+    G ++ VRITD    +L GE+V
Sbjct: 387 SRMELSGRLVNVRITDTGPWSLRGEIV 413


>gi|222528975|ref|YP_002572857.1| MiaB-like tRNA modifying enzyme YliG [Caldicellulosiruptor bescii
           DSM 6725]
 gi|222455822|gb|ACM60084.1| MiaB-like tRNA modifying enzyme YliG [Caldicellulosiruptor bescii
           DSM 6725]
          Length = 440

 Score =  390 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 130/449 (28%), Positives = 221/449 (49%), Gaps = 17/449 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC  N+ DS  M       G+E  ++ +DAD+IV+NTC     A ++    + 
Sbjct: 3   KVGFVSLGCNKNLVDSEIMMGACVKAGFEITSNAEDADVIVVNTCGFINDAKQESIDTIL 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +   K+ + K      ++V GC+ Q   +EIL + P ++ ++G +   +LPE+++    
Sbjct: 63  DMAEYKSKKCK-----FLIVTGCLTQRYKDEILEQMPEIDAILGVKEMLKLPEVIKDLYE 117

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           GK+ +   +     F  LS +           A++ I EGC+  C++C +P  RG   SR
Sbjct: 118 GKQKIKV-FDDTSSFVYLSSMPR-VIATPSYYAYIKIAEGCNNRCSYCSIPLIRGKYTSR 175

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            +  +V EA++L + G  EI L  Q+     G  L G+K   + LL  L +I+ +  +R+
Sbjct: 176 PIEDIVKEAKELAEKGYQEIVLTAQDTT-KYGLDLYGKKMLHA-LLEELEKIEKIKWIRF 233

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
             S+P D+ + LI+       ++ Y  +P+Q  +DRILK MNR+ T    +++I++IR  
Sbjct: 234 LYSYPEDVDESLIEVVKSSSKIVNYFDIPIQHINDRILKLMNRKTTKEGIKRLIEKIRRS 293

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
             ++ I +  +VGFP ETD++F      +    + +  +F YS   GT  S +  QVD+ 
Sbjct: 294 FDEVIIRTTVLVGFPTETDEEFEELCSFLKWAEFDRLGAFMYSQEEGTLASQLP-QVDDE 352

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQS--VV 439
           V+  R   +    R+     N   VG+  EV+IE   K     +GRS    P +    +V
Sbjct: 353 VRQRRYEKVLNIQRKISKRQNKKRVGREYEVVIEAKDK-NNFYIGRSQFEAPEVDGKVLV 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
            + K    G  +KV+I D     L GE++
Sbjct: 412 FSQKKLTAGKFVKVKILDAFEYDLVGEII 440


>gi|167037606|ref|YP_001665184.1| MiaB-like tRNA modifying protein YliG [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|320116021|ref|YP_004186180.1| MiaB-like tRNA modifying enzyme YliG [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
 gi|326389420|ref|ZP_08210987.1| MiaB-like tRNA modifying enzyme YliG [Thermoanaerobacter
           ethanolicus JW 200]
 gi|238064962|sp|B0K9N5|RIMO_THEP3 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|166856440|gb|ABY94848.1| MiaB-like tRNA modifying enzyme YliG [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|319929112|gb|ADV79797.1| MiaB-like tRNA modifying enzyme YliG [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
 gi|325994425|gb|EGD52850.1| MiaB-like tRNA modifying enzyme YliG [Thermoanaerobacter
           ethanolicus JW 200]
          Length = 436

 Score =  390 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 129/448 (28%), Positives = 224/448 (50%), Gaps = 20/448 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +   + S GC  N  DS +M  +   +GY  VN  + AD++++NTC   E A  +   ++
Sbjct: 2   KNVGIISLGCPKNTVDSEKMLAILKEKGYNIVNDKNKADILIINTCGFIEDAKRESIEYI 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             +  LKN R+K      ++  GC+++   +E+L+  P ++ V+G   + ++ E++E   
Sbjct: 62  IEMGKLKNRRLKY-----LIATGCLSERYNKELLKELPELDAVIGTGDFPKIAEVIEEIE 116

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            GK V++  ++     E +  +           A+L I EGC   C+FC++P  RG   S
Sbjct: 117 KGKTVLEYGHANLLNDEGIQRI----LTTPNYYAYLKIAEGCSNACSFCIIPKIRGRYRS 172

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R +  ++ EA +L+  G  E+ L+ Q+     G  +  +K     LL  +S+I GL  +R
Sbjct: 173 RKMEDILREAEELVKKGAKELILIAQDTT-KYGVDVY-KKFMLPQLLKEISKIDGLKWIR 230

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
              ++P  +++ L++   + + ++ Y+ +P+Q   D +LK MNR     +  ++I R+RS
Sbjct: 231 LLYAYPDSVTEELVEEIKNNEKIVKYIDIPLQHSHDEVLKRMNRNTNRQKIEEVISRLRS 290

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             P++ I + F+VGFPGET+++F      + +  + +   F YS   GT    M  Q+ +
Sbjct: 291 -IPNMVIRTTFMVGFPGETEEEFEDLKQFIKEKRFERVGVFTYSREEGTKSYYMKPQIKK 349

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVL 440
           +VK +R   L +  +E     N + VG+ +EVLIE    E G   GRS    P +  VV 
Sbjct: 350 SVKIKRQQELMEIQKEISYQHNLSKVGKQLEVLIEGF--EDGIYYGRSYMDAPEIDGVVY 407

Query: 441 NS--KNHNIGDIIKVRITDVKISTLYGE 466
               K    GD +   ITD     L GE
Sbjct: 408 VKSNKKLKAGDFVVATITDAYEYDLVGE 435


>gi|288555683|ref|YP_003427618.1| RNA modification enzyme, MiaB family [Bacillus pseudofirmus OF4]
 gi|288546843|gb|ADC50726.1| RNA modification enzyme, MiaB family [Bacillus pseudofirmus OF4]
          Length = 449

 Score =  390 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 137/451 (30%), Positives = 240/451 (53%), Gaps = 21/451 (4%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           +P      + GC++N Y++  +  +F  +GYE+V     +D+ V+NTC +     +K   
Sbjct: 1   MP-TVAFHTLGCKVNHYETEAIWQLFKQEGYEKVEYEQTSDVYVINTCTVTNTGDKKSRQ 59

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            + R        I++  D ++ V GC AQ    EI+   P V++VVG Q   ++   +E+
Sbjct: 60  VIRRA-------IRKNPDAVICVTGCYAQTSPAEIMA-IPGVDIVVGTQDRTKMIGYIEQ 111

Query: 143 ARFGKRVVDTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
            +  +  ++   ++     +E L +            A L IQEGC+ FCTFC++P+ RG
Sbjct: 112 FKKEREPINGVGNIMKSRVYEELDVP----AFTDRTRASLKIQEGCNNFCTFCIIPWARG 167

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
           +  SR    V+ +A +L++ G  EI L G +     G G D +  + + LL  L ++ GL
Sbjct: 168 LMRSRDPKDVIKQATQLVEAGYKEIVLTGIHTG---GYGEDLKDYSLARLLEDLEQVDGL 224

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R ++     ++D +I+     + ++ +LH+P+QSGS+ +LK M R++T   + + +D
Sbjct: 225 KRIRISSIEASQLTDEVIEVIDRSEKVVRHLHIPLQSGSNTVLKRMRRKYTMEFFAERLD 284

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           R++ V P +A++SD IVGFPGET+++F+ T D + K  +++   F YS R GTP + M +
Sbjct: 285 RLKEVLPGLAVTSDVIVGFPGETEEEFQETFDFIAKHKFSELHVFPYSKRTGTPAARMDD 344

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK---GKLVGRSPWLQS 437
           Q+DE VK ER+  L +   +    +     G+++EV+ E+  KE    G  +G +     
Sbjct: 345 QIDEEVKNERVHRLIELSNQLAKEYASQFEGEVLEVIPEERDKENPESGLYIGYTDNYLK 404

Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           V + + +  IG I+KV+I         GE V
Sbjct: 405 VKVKATDEMIGKIVKVKIAKAGYPYNKGEFV 435


>gi|260436076|ref|ZP_05790046.1| conserved hypothetical protein [Synechococcus sp. WH 8109]
 gi|260413950|gb|EEX07246.1| conserved hypothetical protein [Synechococcus sp. WH 8109]
          Length = 458

 Score =  390 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 126/461 (27%), Positives = 216/461 (46%), Gaps = 26/461 (5%)

Query: 18  VDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA- 76
           +              GC+ N  D+  M  +    GY       DA ++V+NTC   + A 
Sbjct: 1   MTSTPTKPTVAFAHLGCEKNRVDTEHMVGLLAEAGYGVSTDERDAAVVVVNTCSFIQDAR 60

Query: 77  AEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL 136
            E V + +G     K           +++AGC+AQ   EE+L   P    +VG   Y  +
Sbjct: 61  EESVRTLVGLAEQGKE----------LIIAGCLAQHFQEELLESIPEAKAIVGTGDYQHI 110

Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
            ++L+R   G+RV           +                AFL + EGCD  C FC++P
Sbjct: 111 VDVLQRVEAGERVNQVSAVPTFVGDEHLPRQ---RTTDQAVAFLKVAEGCDYRCAFCIIP 167

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256
             RG + SR +  +V EA +L + GV E+ L+ Q +    G  L G K   ++LL +L +
Sbjct: 168 KLRGDQRSRPIESIVAEAHQLAEQGVQELILISQ-ITTNYGLDLYG-KPKLAELLRALGD 225

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           ++ +  +R   ++P  ++  ++ A+ ++  ++PYL LP+Q     +L++MNR   A    
Sbjct: 226 VE-IPWIRVHYAYPTGLTPDVLAAYREVPNVVPYLDLPLQHSHPEVLRAMNRPWQADVND 284

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
           +++D+IR   PD  + +  IVGFPGET++ F+  M  +++  +     F +SP  GT  +
Sbjct: 285 RLLDQIRDQLPDAVLRTTLIVGFPGETEEHFQHLMGFLERQRFDHVGVFTFSPEDGTAAA 344

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----S 432
            + ++VD  V   R   L    +      N   VG+ ++VLIE+H  + G+++GR    +
Sbjct: 345 ELPDRVDPEVAQARKDALMALQQPISEERNSRWVGRTVDVLIEQHNPQTGEMIGRCARFA 404

Query: 433 PWLQSVV-----LNSKNHNIGDIIKVRITDVKISTLYGELV 468
           P +   V      + +    G ++ V IT   I  L G +V
Sbjct: 405 PEVDGEVRVQPGADDQQAAPGSLVPVEITGADIYDLSGRIV 445


>gi|167748881|ref|ZP_02421008.1| hypothetical protein ANACAC_03655 [Anaerostipes caccae DSM 14662]
 gi|317470277|ref|ZP_07929671.1| MiaB tRNA modifying enzyme YliG [Anaerostipes sp. 3_2_56FAA]
 gi|167651851|gb|EDR95980.1| hypothetical protein ANACAC_03655 [Anaerostipes caccae DSM 14662]
 gi|316902250|gb|EFV24170.1| MiaB tRNA modifying enzyme YliG [Anaerostipes sp. 3_2_56FAA]
          Length = 445

 Score =  390 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 133/450 (29%), Positives = 218/450 (48%), Gaps = 20/450 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC  N+ DS  M  +   +G+   N  ++AD+IV+NTC     A E+  + + 
Sbjct: 2   KILFISLGCDKNLVDSEVMLGLLTERGHTLTNDEEEADVIVINTCCFIHDAKEESINTIL 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +   K   +K      +VVAGC+++   +EIL   P ++ V+G  +Y  + E ++ A  
Sbjct: 62  EMAAYKEQNLK-----ALVVAGCLSERYKDEILEEIPEIDAVLGTTSYDSIVEAVDEALA 116

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYN--RKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           G       Y   +  + L    G           A+L I EGCDK C++C++P  RG   
Sbjct: 117 GN-----GYEHYESIDYLPDNSGHRRLVTTGSHMAYLKIAEGCDKRCSYCIIPKIRGRFR 171

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           S  + +++  AR+L  +GV E+ L+ Q      GK L G+K     LL  L  ++G+  +
Sbjct: 172 SVPMKELLKSARELAASGVTELVLVAQETT-LYGKDLTGKKE-LPTLLKELCGVEGIEWI 229

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R    +P +++D LI+   + + ++ Y+ +P+Q  SD ILK M RR + ++   II ++R
Sbjct: 230 RLLYCYPEEITDELIRTIKEEEKVVNYIDMPIQHCSDGILKRMGRRTSKHDIETIIAKLR 289

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              PD+AI +  I GFPGET++      + V +  + +   F YSP   T  +    Q++
Sbjct: 290 KEIPDMAIRTTLITGFPGETEEQHEELKEFVRQQRFERLGVFTYSPEEDTKAAEFEGQIE 349

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVV 439
           E+VK  R   L    ++         VG+ I VLIE +  E    VGRS    P +   V
Sbjct: 350 EDVKEARRDELMALQQKISYEHTHEMVGKTIRVLIEGYLFEDDVYVGRSYMDAPKVDGCV 409

Query: 440 LNSKNHNI--GDIIKVRITDVKISTLYGEL 467
             +    +  GD + V+IT      L GE+
Sbjct: 410 FVTSPEELLTGDYVYVKITKGNEYDLIGEM 439


>gi|157132304|ref|XP_001655989.1| radical sam proteins [Aedes aegypti]
 gi|108881684|gb|EAT45909.1| radical sam proteins [Aedes aegypti]
          Length = 573

 Score =  390 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 161/503 (32%), Positives = 255/503 (50%), Gaps = 49/503 (9%)

Query: 8   IGVAHMVSQIVDQCIVPQ--------RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSM 59
           +G  H V + VD   +P+        + F + YGCQMN  D+  +  +  S  ++R  ++
Sbjct: 59  VGDVHQVERSVDIPYLPRESLLGQKRKVFFEIYGCQMNTNDTEIVWSILKSHDFQRTGNI 118

Query: 60  DDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILR 119
            DAD+++L TC IR+ A   +++ L  IR +K  R +    L + V GC+A+   ++++ 
Sbjct: 119 KDADVVLLMTCAIRDGAESTIWNRLKHIRLMKGKRDEAKP-LQIGVLGCMAERLKKQLVE 177

Query: 120 RSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAF 179
           +   V+VV GP +Y  LP LL   + G++ ++   S+++ +  +  V      +   TA+
Sbjct: 178 KEQAVDVVAGPDSYKDLPRLLAVGQSGQKAINVMLSLDETYADVMPVKLDRKSR---TAY 234

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG-- 237
           ++I  GCD  C++C+VP+TRG E SR +S +  EA  L D G+ EITLLGQNVN++R   
Sbjct: 235 VSIMRGCDNMCSYCIVPFTRGRERSRPISSIRKEALNLQDKGIKEITLLGQNVNSYRDTS 294

Query: 238 -KGLDGEKC-------------------TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCL 277
               D EK                     F++LL  L+     +R+R+T+ HP+D  + +
Sbjct: 295 ECSEDTEKQASILAPGFKTVYKTKIGGLRFAELLMDLAVTVPEMRIRFTSPHPKDFPNAV 354

Query: 278 IKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIV 337
           ++       +   LHLP QSGS  +L+ M R +T   Y  +ID +RS+ PD+ +SSDFI 
Sbjct: 355 LETIAKYPNICNSLHLPAQSGSSSVLERMRRGYTREAYLNLIDEVRSLIPDVTLSSDFIC 414

Query: 338 GFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQK 396
           GF GETD++F  T+ L+ ++ Y  AF F YS R  T       + V E  K +RL  +  
Sbjct: 415 GFCGETDEEFSETISLIRQVKYHTAFLFAYSMREKTTAHRRYEDDVPEEKKQQRLREMIA 474

Query: 397 KLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRSPWLQSVVLNSKNHNI-------- 447
             R      N   VG+   VL+E   K  K  L GR+     V+L S +  +        
Sbjct: 475 AFRAGAEQLNRQFVGREELVLVEGLSKRSKDDLSGRNDGNIKVILPSGDVPMGHSNADER 534

Query: 448 -----GDIIKVRITDVKISTLYG 465
                GD + V+I +     L G
Sbjct: 535 KTIVSGDYVAVKIVESNSQILKG 557


>gi|312876022|ref|ZP_07736011.1| RNA modification enzyme, MiaB family [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311797220|gb|EFR13560.1| RNA modification enzyme, MiaB family [Caldicellulosiruptor
           lactoaceticus 6A]
          Length = 434

 Score =  389 bits (1000), Expect = e-106,   Method: Composition-based stats.
 Identities = 150/447 (33%), Positives = 246/447 (55%), Gaps = 19/447 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    + GC++N Y++  + ++F   G+E V+    AD+ V+NTC +   +  K    + 
Sbjct: 2   KIAFYTLGCKVNQYETQAVAELFKENGFEIVDFDSKADVYVINTCTVTNISDRKSRQAIK 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           + + L           +VVV GC  Q   +E+  +   V++++G +   R+ + + +   
Sbjct: 62  KAKKL-------SPQSIVVVMGCYPQVYPQEV-EKIEDVDIIIGTKDRQRIVDYVRQYLE 113

Query: 146 GKR---VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            K+    +D +Y  E  FE L I +   + +    AF+ I+EGCD+FC++C++PY RG  
Sbjct: 114 DKKKIVAIDGEYKRE-AFEELKISEFNEHSR----AFIKIEEGCDQFCSYCIIPYARGAV 168

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR L  + +E R+L+  G  E  + G N++A  GK LDG K T  D++  ++EI+G+ R
Sbjct: 169 RSRGLKSIEEEVRRLVQKGYKEFVITGINISA-YGKDLDG-KVTLIDVIERVNEIEGVKR 226

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R ++  P  M+D  I+     D L  +LHL +QSGSD+ILK MNR +T  +Y+ I+DRI
Sbjct: 227 IRLSSLEPVIMNDEFIERLLGFDKLCHHLHLSLQSGSDKILKLMNRHYTTAQYQGIVDRI 286

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R    D+A ++D IVGFPGET++DF AT++ V KIG+++   F++SP+ GT    M  QV
Sbjct: 287 REKWEDVAFTTDIIVGFPGETEEDFNATLEFVQKIGFSRIHVFRFSPKKGTKAYEMPNQV 346

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWL-QSVVLN 441
           D   K  R   +++        F+   VG  +EVLIE+     G   G S    +++V  
Sbjct: 347 DSKEKERRSKIMKEVAANLAYQFHKKFVGNWLEVLIEQDSDFDGYYEGYSGNYIRTLVRK 406

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
           S     G+I KV+IT      + GE++
Sbjct: 407 SHMIVPGEIYKVKITQAYEQYVKGEII 433


>gi|312793464|ref|YP_004026387.1| RNA modification enzyme, miab family [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312180604|gb|ADQ40774.1| RNA modification enzyme, MiaB family [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 434

 Score =  389 bits (1000), Expect = e-106,   Method: Composition-based stats.
 Identities = 149/447 (33%), Positives = 247/447 (55%), Gaps = 19/447 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    + GC++N Y++  + ++F   G+E V+    AD+ V+NTC +   +  K    + 
Sbjct: 2   KIAFYTLGCKVNQYETQAVAELFKENGFEIVDFDSKADVYVINTCTVTNISDRKSRQAIK 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           + + L           +VVV GC  Q   +E+  +   V++++G +   R+ + + +   
Sbjct: 62  KAKKL-------SPQSIVVVMGCYPQVYPQEV-EKIEDVDIIIGTKDRQRIVDYVRQYLE 113

Query: 146 GKR---VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            K+    +D +Y  E  FE L I +   + +    AF+ I+EGCD+FC++C++PY RG  
Sbjct: 114 DKKKIVAIDGEYKRE-AFEELKISEFNEHSR----AFIKIEEGCDQFCSYCIIPYARGAV 168

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SRSL  + +E  +L+  G  E  + G N++A  GK LDG K T  D++  +++I+G+ R
Sbjct: 169 RSRSLKSIEEEVVRLVQKGYKEFVITGINISA-YGKDLDG-KVTLIDVIERVNKIEGVKR 226

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R ++  P  M+D  I+     D L  +LHL +QSGSD+ILK MNR +T  +Y+ I+DRI
Sbjct: 227 IRLSSLEPVIMNDEFIERLLGFDKLCHHLHLSLQSGSDKILKLMNRHYTTAQYQGIVDRI 286

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R    D+A ++D IVGFPGET++DF AT++ V KIG+++   F++SP+ GT   +M  QV
Sbjct: 287 REKWEDVAFTTDIIVGFPGETEEDFNATLEFVQKIGFSRIHVFRFSPKKGTKAYDMPNQV 346

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWL-QSVVLN 441
           D   K  R   +++        F+   VG  +EVLIE+     G   G S    +++V  
Sbjct: 347 DSKEKERRSKIMKEVAANLAYQFHKKFVGNWLEVLIEQDSDFDGYYEGYSGNYIRTLVRK 406

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
           S     G+I KV+IT      + GE++
Sbjct: 407 SHMIVPGEIYKVKITQAYEQYVKGEII 433


>gi|298489930|ref|YP_003720107.1| MiaB family RNA modification protein ['Nostoc azollae' 0708]
 gi|298231848|gb|ADI62984.1| RNA modification enzyme, MiaB family ['Nostoc azollae' 0708]
          Length = 440

 Score =  389 bits (1000), Expect = e-106,   Method: Composition-based stats.
 Identities = 128/448 (28%), Positives = 219/448 (48%), Gaps = 19/448 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
              +   GC+ N  D+  M  +    GY    + + AD +++NTC   E A E+    L 
Sbjct: 6   TIAISHLGCEKNRIDTEHMLGLLVEAGYGVDTNDELADYVIVNTCSFIEAAREESVKTLV 65

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +               VV+ GC+AQ   E++L   P    V+G   Y+++  ++ER   
Sbjct: 66  ELAEANKK---------VVITGCLAQHFQEQLLEELPEALAVIGTGDYHKIVNVIERVEQ 116

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G+RV     + +  +              GV A+L + EGCD  C FC++P+ RG + SR
Sbjct: 117 GERVKQI--TPQPTYIADETTPRYRTTTEGV-AYLRVAEGCDYRCAFCIIPHLRGNQRSR 173

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           ++  +V EA++L   GV EI L+ Q +    G  + G K   ++LL +L ++  +  +R 
Sbjct: 174 TIESIVAEAKQLASQGVKEIILISQ-ITTNYGLDIYG-KPKLAELLCALGKVD-VPWIRM 230

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
             ++P  ++  +I A  ++  ++PYL LP+Q     IL++MNR         II+ I++ 
Sbjct: 231 HYAYPTGLTPDVIAAIQEIPNVLPYLDLPLQHSHPEILRAMNRPWQGRVNDTIIESIKTA 290

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P   + + FIVGFPGET + F   ++  ++  +     F +SP  GTP  N+L Q+ + 
Sbjct: 291 LPSAVLRTTFIVGFPGETQEHFEHLLEFTERHEFDHVGVFTFSPEEGTPAYNLLNQLPQE 350

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVVLN 441
           +  ER   L    +   +  N   V +I++VLIE+   E G+L+GR    SP +   V  
Sbjct: 351 LMVERRDQLMALQQPISLLKNQQEVDKIVDVLIEQENPESGELIGRSGRFSPEVDGQVYV 410

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELVV 469
             +  +G I+ V+I       LYG++++
Sbjct: 411 KGDAGLGTIVPVKIHSADAYDLYGQIIM 438


>gi|242239728|ref|YP_002987909.1| ribosomal protein S12 methylthiotransferase [Dickeya dadantii
           Ech703]
 gi|242131785|gb|ACS86087.1| MiaB-like tRNA modifying enzyme YliG [Dickeya dadantii Ech703]
          Length = 467

 Score =  389 bits (1000), Expect = e-106,   Method: Composition-based stats.
 Identities = 140/476 (29%), Positives = 229/476 (48%), Gaps = 36/476 (7%)

Query: 7   LIGVAHMVSQIVDQCIVP--QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADL 64
           L      ++   D   +P   R    S GC  N+ DS R+     ++GY+ V S +DADL
Sbjct: 14  LSAPQKALADQNDDTGMPLSHRIGFISLGCPKNLVDSERILTELRTEGYQVVPSYNDADL 73

Query: 65  IVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIV 124
           +++NTC   + A ++    +G              +  V+V GC+  A+  +I    P V
Sbjct: 74  VIVNTCGFIDSAVQESLEAIGEA---------LNENGKVIVTGCLG-AKENQIREVHPKV 123

Query: 125 NVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQE 184
             + GP +Y ++   +                 ++F  L+   G     R   A+L I E
Sbjct: 124 LEITGPHSYEQVLSHVHHY--------VPKPEHNQFTSLTPAQGVKLTPRHY-AYLKISE 174

Query: 185 GCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA------WRGK 238
           GCD  CTFC++P  RG   SR +  V+DEAR+L D GV E+ ++ Q+ +A       R  
Sbjct: 175 GCDHRCTFCIIPSMRGDLDSRPIGAVLDEARRLKDAGVKELLVISQDTSAYGADVKHRTG 234

Query: 239 GLDGE--KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQ 296
             +G+  K +  DL   L+ +   VRL Y   +P   +   + A G    ++PYL +P+Q
Sbjct: 235 FWNGQPVKTSMVDLCEQLATLGIWVRLHYVYPYPHVDTVIPLMAAG---KILPYLDIPLQ 291

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
             S +ILK M R        + I R R + P++ + S FIVGFPGET++DF+  +D + +
Sbjct: 292 HASPKILKLMKRPGAVERTLERIKRWREICPELTLRSTFIVGFPGETEEDFQMLLDFLTE 351

Query: 357 IGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEV 416
               +   FK+SP  G   +++ + V E VK +R     +  +E       A VG+ ++V
Sbjct: 352 AQLDRVGCFKFSPVDGAAANDLPDPVPEAVKEDRYHRFMQLQQEISARRLQAKVGRELKV 411

Query: 417 LIEKHGKEK--GKLVGRSPWLQS-VVLNSKN-HNIGDIIKVRITDVKISTLYGELV 468
           LI++  +E   G+ +  +P +   V LN +   N+GD++ VRI       L+G L+
Sbjct: 412 LIDEVDEEGAIGRSMADAPEIDGAVYLNGEKRVNVGDLVTVRIEHADEYDLWGSLI 467


>gi|291459240|ref|ZP_06598630.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Oribacterium sp. oral
           taxon 078 str. F0262]
 gi|291418494|gb|EFE92213.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Oribacterium sp. oral
           taxon 078 str. F0262]
          Length = 479

 Score =  389 bits (1000), Expect = e-106,   Method: Composition-based stats.
 Identities = 160/440 (36%), Positives = 250/440 (56%), Gaps = 17/440 (3%)

Query: 33  GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92
           GCQM+  D+ ++  +    GY      DDAD+I+  TC +RE A +K+Y  +GR+++   
Sbjct: 53  GCQMSAKDAEKLRGILKGCGYREAEREDDADVILFTTCTVRENANQKLYGRIGRLKH--- 109

Query: 93  SRIKEGGDLLVVVAGCVAQAEGE--EILRRSPIVNVVVGPQTYYRLPELLERA-RFGKRV 149
            + +    +++ + GC+ Q + E   I +R P V ++ G    Y+L ELL R  R  +R 
Sbjct: 110 -QCERRKGMILGITGCMMQEKDEVETIRKRYPYVKLIFGTHNVYKLAELLYRTLRRDERT 168

Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209
           V+         E L  +     RK    A + I  GC+ FCT+C+VPY RG E SRS  +
Sbjct: 169 VEIIDDTSLIVENLPSL-----RKTDFRASVNISYGCNNFCTYCIVPYVRGREKSRSSEE 223

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSH 269
           ++ E R L+ +GV EI LLGQNVN++   GLD E+  F +LL  +SEI GL R+R+ T +
Sbjct: 224 ILRECRDLVRDGVKEIMLLGQNVNSY---GLDREELRFPELLRRVSEIPGLRRIRFMTPN 280

Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329
           P+D S+ LI   G+ + +  ++HLP+QSGS  +L+ MNR +T   Y  ++ RIR   PD+
Sbjct: 281 PKDFSEELIDLIGERENICRHIHLPLQSGSTEVLRRMNRHYTKESYLALVRRIREKLPDV 340

Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAE 389
           ++++D IVGFPGE++ DF+ TMD+V ++G+  AF+F YS R GTP +     V E +  +
Sbjct: 341 SLTTDIIVGFPGESERDFQDTMDVVRRVGFDSAFTFVYSKRSGTPAAKWEG-VSEELVKD 399

Query: 390 RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNSKNHNIG 448
           R   L   +RE         +G+++EVL+E+  +EK G L GR      V        IG
Sbjct: 400 RFHRLLDAVRESSAENEGRDIGKVMEVLVEERDREKPGFLTGRLSNNILVHFRGGERLIG 459

Query: 449 DIIKVRITDVKISTLYGELV 468
           +++ V + + +     G L+
Sbjct: 460 ELVSVELLESRGFYYMGRLL 479


>gi|282897302|ref|ZP_06305304.1| conserved hypothetical protein [Raphidiopsis brookii D9]
 gi|281197954|gb|EFA72848.1| conserved hypothetical protein [Raphidiopsis brookii D9]
          Length = 439

 Score =  389 bits (1000), Expect = e-106,   Method: Composition-based stats.
 Identities = 134/448 (29%), Positives = 223/448 (49%), Gaps = 19/448 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
              +   GC+ N  D+  +  +    GY    + + AD +++NTC   E A E+    L 
Sbjct: 6   TIAISHLGCEKNRIDTEHILGLLVEAGYSVDTNEELADYVIVNTCSFIEAAREESVRTLV 65

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +               +V+AGC+AQ   E++L   P    VVG   Y+++  +LER   
Sbjct: 66  ELAESNKK---------IVIAGCMAQHFQEQLLEELPEAVAVVGTGDYHKIVNVLERVER 116

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G+RV     SV+  +              GV A+L + EGCD  C FC++PY RG + SR
Sbjct: 117 GERVKQI--SVDPTYIADENTPRYRTTTEGV-AYLRVAEGCDYGCAFCIIPYLRGNQRSR 173

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           ++  +V EA++L   GV E+ L+ Q +    G  + G+    ++L+ +L E+  +  +R 
Sbjct: 174 TIESIVGEAKQLAAQGVKELILISQ-ITTNYGLDIYGQPK-LAELISALGEVD-IPWVRM 230

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
             ++P  ++  +IKA  +    +PYL LP+Q     IL++MNR         II+RI++ 
Sbjct: 231 HYAYPTGITPDVIKAIQETANFLPYLDLPLQHSHPEILRAMNRPWQGRVNDGIIERIKTA 290

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P+  + + FIVGFPGET + F   ++  ++  +     F +SP  GTP  N+  Q+ + 
Sbjct: 291 LPEAVLRTTFIVGFPGETQEHFDHLLEFTERHQFDHLGVFTFSPEEGTPAYNLPNQLPQE 350

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVLN 441
           +  ER   L +  +   +  N   VG+I++VLIE+   + G L+GRS    P +   V  
Sbjct: 351 LMVERRNQLMEIQQPISLHKNWQQVGRIVDVLIEQENPQTGDLIGRSDRFAPEVDGQVYV 410

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELVV 469
               ++G I+ V+IT      LYGE+V+
Sbjct: 411 QGKASLGTIVPVKITTADAYDLYGEVVM 438


>gi|268571887|ref|XP_002641175.1| Hypothetical protein CBG09036 [Caenorhabditis briggsae]
          Length = 997

 Score =  389 bits (1000), Expect = e-106,   Method: Composition-based stats.
 Identities = 154/467 (32%), Positives = 235/467 (50%), Gaps = 31/467 (6%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +     +YGCQMNV D   +  +    G+      + AD+++L TC IR+ A +KV++ L
Sbjct: 534 RTVCYVTYGCQMNVSDMEIVRSIMTQYGFVESEKKEKADVVLLMTCSIRDGAEKKVWNHL 593

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             IR+            +V V GC+A+    ++L +  +VN+V GP +Y  LP L+  A 
Sbjct: 594 KLIRS-----NSVNKSQIVGVLGCMAERVRHDLLAKRNLVNIVAGPDSYRDLPRLVAIAA 648

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G   ++   S+++ +  +  +      K   TAF++I  GCD  CT+CVVP+TRG E S
Sbjct: 649 GGSNAINVQLSLDETYADVQPIRVDAATK---TAFISIMRGCDNMCTYCVVPFTRGRERS 705

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG----------KGLDGEKC--------- 245
           R +  +V+E R+L D+G  +ITLLGQNVN++R             + G K          
Sbjct: 706 RPIESIVEEVRRLRDDGYKQITLLGQNVNSYRDLTISPSTSSEDRVPGFKTVYKPKTGGL 765

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
           TF+ LL  +++    VR R+T+ HP+D    LI+       L   LHLP QSG D  L+ 
Sbjct: 766 TFTSLLEQVADAAPEVRFRFTSPHPKDFPMQLIELIASRPNLCKQLHLPAQSGDDDTLER 825

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           M R +T   Y +++D IR + P++ ++SDFI GF GET+   + T+ L+ ++GY+  F F
Sbjct: 826 MGRGYTRDLYLRLVDDIRKILPNVFLTSDFIAGFCGETEQAHQMTLSLIRQVGYSFCFVF 885

Query: 366 KYSPRLGTPG-SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE 424
            YS R  T     + + V E VKA+R L L    RE+ +  N   +G    VL E   + 
Sbjct: 886 PYSMRGKTRAHHRLADDVPEEVKAQRHLDLTTVFREEALKLNQTLIGTEQIVLREGTSRR 945

Query: 425 KGKL-VGRSPWLQSVVLNSKNH--NIGDIIKVRITDVKISTLYGELV 468
                 GR       V  +       G   KV IT+    TL  +L+
Sbjct: 946 DATFSYGRIDGGVKTVFPNPEDIVKPGQYAKVLITEANSQTLRAQLI 992


>gi|300867546|ref|ZP_07112196.1| Ribosomal protein S12 methylthiotransferase rimO [Oscillatoria sp.
           PCC 6506]
 gi|300334434|emb|CBN57366.1| Ribosomal protein S12 methylthiotransferase rimO [Oscillatoria sp.
           PCC 6506]
          Length = 439

 Score =  389 bits (1000), Expect = e-106,   Method: Composition-based stats.
 Identities = 125/452 (27%), Positives = 220/452 (48%), Gaps = 19/452 (4%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
                      GC+ N  D+  M  +    GY+   + + AD +++NTC   + A E+  
Sbjct: 2   ATKPTIAFTHLGCEKNRIDTEHMIGLLAQAGYQVDANEELADYVIVNTCSFIQAAREESV 61

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             L  +               +V+AGC+AQ   +++L   P    +VG   Y+++  ++E
Sbjct: 62  RTLVELAQANKK---------IVIAGCMAQHFQQDLLNELPEAVALVGTGDYHQIVGVIE 112

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           +   G RV           +  +     Y       A+L I EGCD  C FC++P+ RG 
Sbjct: 113 QVEKGDRVTLVSAEPTYIADENTP---RYRTTPEAVAYLRIAEGCDYRCAFCIIPHLRGN 169

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           + SR++  +V EA +L   GV EI L+ Q +    GK + GE    ++LL++L ++  + 
Sbjct: 170 QRSRTIESIVAEAEQLAAEGVKEIILISQ-ITTNYGKDIYGEPK-LAELLHALGKVD-IP 226

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
            +R   ++P  ++  ++ A  +   ++PYL LP+Q     IL++MNR   A     II+R
Sbjct: 227 WIRMHYAYPTGLTPKVMAAIQETPNILPYLDLPLQHSHPEILRAMNRPFQAGVNDSIIER 286

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I++  PD  + + FIVGFPGET++     ++ V +  +     F +SP  GTP  ++  Q
Sbjct: 287 IKASMPDAILRTTFIVGFPGETEEHAAHLLEFVKRHEFDHVGVFTFSPEEGTPAHDLPNQ 346

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQS 437
           + + V   R   +    +   +  N   VG++++VL+E+   E G+L+GR    SP +  
Sbjct: 347 LPQEVMEARREAVMAAQQPISLKNNQKSVGKVVDVLLEQENPETGELIGRSARFSPDVDG 406

Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
           +V      ++G +++V IT+  I  LYG +  
Sbjct: 407 LVYVEGEASLGAMVRVNITNADIYDLYGSVAT 438


>gi|312127656|ref|YP_003992530.1| RNA modification enzyme, miab family [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311777675|gb|ADQ07161.1| RNA modification enzyme, MiaB family [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 434

 Score =  389 bits (1000), Expect = e-106,   Method: Composition-based stats.
 Identities = 147/447 (32%), Positives = 244/447 (54%), Gaps = 19/447 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    + GC++N Y++  + ++F   G+E V+    AD+ V+NTC +   +  K    + 
Sbjct: 2   KIAFYTLGCKVNQYETQAVAELFKESGFEIVDFDSKADVYVINTCTVTNISDRKSRQAIK 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           + + L           +VVV GC  Q   +E+  +   V++++G +   R+ + + +   
Sbjct: 62  KAKKL-------SPQSIVVVMGCYPQVYPQEV-EKIEDVDIIIGTKDRQRIVDYVRQYLE 113

Query: 146 GKR---VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            K+    +D +Y  E  FE L I +     +    AF+ I+EGCD+FC++C++PY RG  
Sbjct: 114 DKKKIVAIDGEYKRE-AFEELKISEFNERSR----AFIKIEEGCDQFCSYCIIPYARGAV 168

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SRSL  + +E  +L+  G  E  + G N+++  GK LDG K T  D++  +++I+G+ R
Sbjct: 169 RSRSLKSIEEEVIRLVQKGYKEFVITGINISS-YGKDLDG-KVTLIDVIERVNKIEGVKR 226

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R ++  P  M+D  I+     D L  +LHL +QSGSD+ILK MNR +T  +Y+ I+DRI
Sbjct: 227 IRLSSLEPVIMNDEFIERLLGFDKLCHHLHLSLQSGSDKILKLMNRHYTTAKYQGIVDRI 286

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R    D+A ++D IVGFPGET++DF AT++ V KIG+++   F++SP+ GT    M  QV
Sbjct: 287 REKWEDVAFTTDIIVGFPGETEEDFNATLEFVQKIGFSRIHVFRFSPKKGTKAYEMPNQV 346

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
           D   K  R   +++        F+   VG  +EVLIE+     G   G S      ++  
Sbjct: 347 DSKEKERRSKVMKEVAARLSYQFHRKFVGNWLEVLIEQDSDFDGYYEGYSGNYIRTLIRK 406

Query: 443 KNHNI-GDIIKVRITDVKISTLYGELV 468
            N  + G+I KV+IT      + GE++
Sbjct: 407 SNMIVSGEIYKVKITQAYEQYVKGEII 433


>gi|254413514|ref|ZP_05027284.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Microcoleus
           chthonoplastes PCC 7420]
 gi|196179621|gb|EDX74615.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Microcoleus
           chthonoplastes PCC 7420]
          Length = 445

 Score =  389 bits (1000), Expect = e-106,   Method: Composition-based stats.
 Identities = 135/447 (30%), Positives = 216/447 (48%), Gaps = 19/447 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
              +   GC+ N  D+  +  +    GY   ++ D A+ +++NTC   E A  +    L 
Sbjct: 6   TIAISHLGCEKNRIDTEHILGLLVQAGYPVDSNEDLAEYVIVNTCSFIEAARTESVRTLV 65

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +               +V+AGC+AQ   E++L   P    VVG   Y  + E++ER   
Sbjct: 66  ELAEANKK---------IVIAGCMAQHFQEKLLAELPEAVAVVGTGDYQNIVEVIERVEA 116

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G+RV     S E  +              GV A+L + EGC+  C FC++PY RG + SR
Sbjct: 117 GERVKAV--SAEPTYIADETTPRYRTTSEGV-AYLRVAEGCNYRCAFCIIPYLRGNQRSR 173

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           ++  +V EA +L   GV E+ L+ Q +    G  L GE    ++LL +L ++  +  +R 
Sbjct: 174 TIESIVAEAEQLASQGVQELILISQ-ITTNYGVDLYGEPK-LAELLRALGKVD-IPWIRM 230

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
             ++P  +++ ++ A  +   ++PYL LP+Q     +L++MNR        QIID I++ 
Sbjct: 231 HYAYPTGLTEPVMAAIQETPNVLPYLDLPLQHSHPEVLRAMNRPWQGRVNDQIIDHIKTA 290

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P+  + + FIVGFPGET+  F   +  V    +     F +SP  GTP  N+   V + 
Sbjct: 291 LPNAVLRTTFIVGFPGETEQHFNHLLQFVQHHEFDHVGVFTFSPEEGTPAYNLPNSVPQA 350

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVLN 441
           V  ER   L    +   +  N   VG+I++VLIE+     GK +GRS    P +  +V  
Sbjct: 351 VMEERRQTLMAVQQPITLKKNQGEVGKIVDVLIEQENPSTGKQIGRSARFAPEVDGLVYV 410

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                +G I++V ITD  I  LYG +V
Sbjct: 411 QGEAPLGTIVEVEITDAGIYDLYGSVV 437


>gi|291519359|emb|CBK74580.1| SSU ribosomal protein S12P methylthiotransferase [Butyrivibrio
           fibrisolvens 16/4]
          Length = 442

 Score =  389 bits (1000), Expect = e-106,   Method: Composition-based stats.
 Identities = 120/452 (26%), Positives = 216/452 (47%), Gaps = 19/452 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC  N+ DS  M      +G+   +   +AD+IV+NTC     A E+    + 
Sbjct: 2   KVLFVSLGCDKNLVDSEHMLGDLIEEGFTICDDEAEADIIVVNTCSFIADAMEESIQNII 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA-- 143
            +   K +    G    ++V GC+AQ   +EIL   P V+ ++G  +Y  L + +     
Sbjct: 62  DMGQYKEN----GNLKGLIVTGCLAQRFTDEILADLPEVDAIIGTNSYDELLKAINIVLE 117

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           + G++ +     ++     L           G   +L I EGC+K CT+C++PY RG   
Sbjct: 118 KNGEKPI-----IKKPLTGLPRNGKRVLTTGGHYGYLKIAEGCNKRCTYCIIPYIRGDYR 172

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           S  + +++ EA++L+ +GV EI L+ Q      G  +   K +  +LL  L EI GL  +
Sbjct: 173 SVPMEEILSEAKQLVADGVKEIILVAQETT-VYGMDIY-NKKSLPELLNKLCEIDGLEWI 230

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R   ++P +++D LI+       +  Y+ +P+Q  +D +L+ M R+    +   I  R+R
Sbjct: 231 RILYAYPEEITDELIECMASQPKICHYIDMPIQHCNDELLRKMGRKTNKADIMNIAARLR 290

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              PDI++ +  I GFPGET++  +  +  +  + + +  +F YS   GT  +    QVD
Sbjct: 291 EAMPDISLRTTLICGFPGETEEMHQELLQFIKDMQFDRLGAFAYSKEDGTVAATWDNQVD 350

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVV 439
           E++K +    +    ++  +S N+  VG+ I V IE    E G  +GR    +P +   +
Sbjct: 351 EDLKHKWQDEVMLCQKDISMSNNEKYVGRTIPVFIEGKLPEDGVFIGRTYRDTPSVDGFI 410

Query: 440 LNSKNHNI--GDIIKVRITDVKISTLYGELVV 469
             + +  +  G  + V +T      L G++ +
Sbjct: 411 FVNSDTELTSGQFVDVTVTSFDEYDLIGDVAL 442


>gi|33866726|ref|NP_898285.1| Fe-S oxidoreductase [Synechococcus sp. WH 8102]
 gi|81573837|sp|Q7U477|RIMO_SYNPX RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|33639327|emb|CAE08709.1| possible Fe-S oxidoreductase [Synechococcus sp. WH 8102]
          Length = 464

 Score =  389 bits (999), Expect = e-106,   Method: Composition-based stats.
 Identities = 125/463 (26%), Positives = 221/463 (47%), Gaps = 26/463 (5%)

Query: 16  QIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREK 75
            ++              GC+ N  D+  M  +    GY    + +DA ++V+NTC   + 
Sbjct: 5   AVMTSTPTKPTVAFAHLGCEKNRVDTEHMVGLLAQAGYGVSTNENDAAVVVVNTCSFIQD 64

Query: 76  A-AEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYY 134
           A  E V + +G     K           +++AGC+AQ   +E+L   P    +VG   Y 
Sbjct: 65  AREESVRTLVGLAEQGKE----------LIIAGCLAQHFQDELLESIPEAKAIVGTGDYQ 114

Query: 135 RLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCV 194
            + E+L+R   G+RV           +                AFL + EGCD  C FC+
Sbjct: 115 HIVEVLQRVEAGERVNRVSAVPTFVGDEHLPRQ---RTTDQAVAFLKVAEGCDYRCAFCI 171

Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL 254
           +P  RG + SR +  +V EA +L++ GV E+ L+ Q +    G  L G K   ++LL +L
Sbjct: 172 IPKLRGDQRSRPIESIVAEAHQLVEQGVQELILISQ-ITTNYGLDLYG-KPKLAELLRAL 229

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
            E++ +  +R   ++P  ++  ++ A+ ++  ++PYL LP+Q     +L++MNR   A  
Sbjct: 230 GEVE-IPWIRVHYAYPTGLTPEVLAAYREVPNVVPYLDLPLQHSHPEVLRAMNRPWQADV 288

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
             +++D+IR   PD  + +  IVGFPGET++ F+  M+ + +  +     F +SP  GT 
Sbjct: 289 NDRLLDQIRDQLPDAVLRTTLIVGFPGETEEHFQHLMEFLRRQRFDHVGVFTFSPEDGTA 348

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR--- 431
            + +   VD +V   R   L    +      N + V + ++VLIE+H  + G+++GR   
Sbjct: 349 AAELPNPVDPDVAQARKDALMALQQPISAERNHSWVSRTVDVLIEQHNPQTGQMIGRCAR 408

Query: 432 -SPWLQS-VVL----NSKNHNIGDIIKVRITDVKISTLYGELV 468
            +P +   V +    + +    G ++ V+IT   +  L G +V
Sbjct: 409 FAPEVDGEVHVQPGEDGQKAAPGTMVPVQITGADVYDLSGRIV 451


>gi|324508033|gb|ADY43398.1| CDK5RAP1-like protein [Ascaris suum]
          Length = 584

 Score =  389 bits (999), Expect = e-106,   Method: Composition-based stats.
 Identities = 154/478 (32%), Positives = 244/478 (51%), Gaps = 43/478 (8%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++    +YGCQMNV D   +  + F+  Y  V+    AD+++L TC IRE A EKV+  L
Sbjct: 94  RKVKFITYGCQMNVNDMETVRSILFANKYLEVDDERKADVVLLMTCSIREGAEEKVWRVL 153

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            ++R              V V GC+A+    ++L+ +  V+VV GP +Y  LP LL   R
Sbjct: 154 KKLRR------SANKQQTVGVLGCMAERVRHKLLQEANAVDVVAGPDSYRDLPRLLAVTR 207

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G+  ++   S+E+ +  ++ V      K   +AF++I  GCD  CT+C+VP+TRG E S
Sbjct: 208 TGRSAINVQLSLEETYADVTPVRLDPMAK---SAFVSIMRGCDNMCTYCIVPFTRGRERS 264

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG--------------LDGEKC----- 245
           R L  +VDE ++L   G  ++ LLGQNVN++R                   G K      
Sbjct: 265 RPLRSIVDEVKRLSYQGYKQVVLLGQNVNSYRDTSEATYVSCGIDDSGLAPGFKTIYKPK 324

Query: 246 ----TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
                F+ LL  +S++   +R+R+T+ HP+D S  +I+   +   +   +HLP QSGS+ 
Sbjct: 325 KSGLNFATLLERVSDVDPEMRIRFTSPHPKDFSFQVIELIKERTNICKQIHLPAQSGSNT 384

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
           +L++M R +T   Y  ++D+IR + P+++++SDFI GF GET+ D + T+DL+ ++ Y+ 
Sbjct: 385 VLEAMGRGYTRESYLALVDQIRQLIPEVSLTSDFIAGFCGETERDHQQTLDLIRRVKYSF 444

Query: 362 AFSFKYSPRLGTPG-SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
            + F YS R  T    ++ + V   VK  R   L +  R + +  N A VG    VLIE 
Sbjct: 445 CYVFPYSMREKTRASYHLKDDVPIEVKRRRHEELAQVFRGEALKTNAALVGSKQLVLIES 504

Query: 421 HGKEKGKLV-GRSPWLQSVVLNS---------KNHNIGDIIKVRITDVKISTLYGELV 468
             K     V GR+     V+L +         +    GD + V I      TL G  +
Sbjct: 505 RSKRSATAVAGRADGGAKVILENCEVDGCGEVRELRPGDYVAVEIESANSQTLLGRAL 562


>gi|229890692|sp|A7GZE1|MIAB_CAMC5 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
          Length = 433

 Score =  389 bits (999), Expect = e-106,   Method: Composition-based stats.
 Identities = 157/448 (35%), Positives = 244/448 (54%), Gaps = 20/448 (4%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++ F+++ GC MNV DS  +       + Y    ++++ADLI++NTC +REK   K++
Sbjct: 1   MSKKLFIQTLGCAMNVRDSEHIIAELSQKEDYTLTQNLEEADLILINTCSVREKPVHKLF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S +G     K +  K      + V GC A   G+EI +R+P V+ V+G +   ++   ++
Sbjct: 61  SEVGAFEKAKKNGAK------IGVCGCTASHLGDEIFKRAPYVDFVLGARNVSKISTAVK 114

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
             +F    ++ D S     E          R     + + I  GCDK CT+C+VP+TRG 
Sbjct: 115 TPKFISTDINHDESEYAFGEF---------RGSPYKSHINISIGCDKKCTYCIVPHTRGD 165

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG--EKCTFSDLLYSLSEIKG 259
           EIS   + ++ E  K   NG  EI LLGQNVN   GK   G  EK  FSDLL  +SE+ G
Sbjct: 166 EISIPANLILREVEKAATNGAKEIFLLGQNVN-NYGKRFSGAHEKIDFSDLLVRISEVAG 224

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           + R+R+T+ HP  M D  ++       +   +H+P+QSG+ ++L+ M R +T   +    
Sbjct: 225 VERIRFTSPHPLHMDDKFLEIFSQNPKICKSMHMPLQSGNTKVLREMKRGYTKEWFLDRA 284

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            ++R + PD++IS+D IV FPGE+D +F  TMD+++++ + Q FSFKYSPR  T  +   
Sbjct: 285 AKLREMCPDVSISTDIIVAFPGESDAEFEDTMDVLERVKFEQIFSFKYSPRPMTKAAEFT 344

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV 439
            Q+DE   + RL  LQ +  E       A  G+I++V  E+  +  G + GRS     V 
Sbjct: 345 NQIDEATASARLTRLQSRHNEILDEIVAAQEGKILDVYFEEL-RANGGVAGRSFNNFLVQ 403

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGEL 467
           +N     +G  +KV+ITD K   LYGEL
Sbjct: 404 VNGSEELLGRTLKVKITDTKRMVLYGEL 431


>gi|57242309|ref|ZP_00370248.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Campylobacter upsaliensis
           RM3195]
 gi|57016989|gb|EAL53771.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Campylobacter upsaliensis
           RM3195]
          Length = 433

 Score =  389 bits (999), Expect = e-106,   Method: Composition-based stats.
 Identities = 153/446 (34%), Positives = 243/446 (54%), Gaps = 18/446 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ F+++ GC MNV DS  +       + Y     + +ADLI++NTC +REK   K++S 
Sbjct: 4   KKLFIQTLGCAMNVRDSEHIIAELTQKENYSLTEDIKEADLILINTCSVREKPVHKLFSE 63

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G    +K    K      + V GC A   GEEI RR+P V+ V+G +   ++ + ++  
Sbjct: 64  VGGFEKVKKKGAK------IGVCGCTASHLGEEIFRRAPYVDFVLGARNISKITQAVKTP 117

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           +F    +D D S     +          R     +++ I  GCDK CT+C+VP+TRG EI
Sbjct: 118 KFVGVDLDYDESEFAFSDF---------RNSPYKSYINISIGCDKHCTYCIVPHTRGDEI 168

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG-EKCTFSDLLYSLSEIKGLVR 262
           S     + +EA++ ++ G  EI LLGQNVN +  +  +  +K  FSDLL SLSEI+ L R
Sbjct: 169 SIPFELIYNEAKRAVEKGAKEIFLLGQNVNNYGKRFRNAHKKMDFSDLLNSLSEIENLRR 228

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+T+ HP  M D  ++     + +   +H+P+QSGS  ILK+M R ++   Y     ++
Sbjct: 229 IRFTSPHPLHMDDKFLQTFSQNEKICKAMHMPLQSGSSEILKAMKRGYSKEWYLDRALKL 288

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R +  D++IS+D IV FPGE++ DF  T+D+++K+ + Q FSFKYS R  T  + M  Q+
Sbjct: 289 RELCKDVSISTDIIVAFPGESEKDFEDTLDVLEKVRFEQIFSFKYSKRPLTKAATMQGQI 348

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
            E++ + RL  LQ +  E           Q  EVL E+  +    + GR+     V +  
Sbjct: 349 PEDIASRRLSFLQNRHAEILDEITKKQENQTFEVLFEEL-RANNAVAGRTDNNFLVQIQG 407

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
               +G + +V+IT+ K   LYGE+V
Sbjct: 408 SEEMLGTMKQVKITNAKRMVLYGEIV 433


>gi|313676026|ref|YP_004054022.1| SSU ribosomal protein s12p methylthiotransferase [Marivirga
           tractuosa DSM 4126]
 gi|312942724|gb|ADR21914.1| SSU ribosomal protein S12P methylthiotransferase [Marivirga
           tractuosa DSM 4126]
          Length = 436

 Score =  389 bits (999), Expect = e-106,   Method: Composition-based stats.
 Identities = 129/451 (28%), Positives = 218/451 (48%), Gaps = 34/451 (7%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVN--SMDDADLIVLNTCHIREKAAEKVYSF 83
           +  V + GC  N+ DS  M         +  +    DD+++IV+NTC   + A ++    
Sbjct: 10  KVNVVTLGCSKNLVDSEVMITQLRGNSIDVTHESDKDDSNIIVVNTCGFIDNAKQESIDT 69

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           + R  + K      G    + V GC++Q   +++ +  P V+   G       P LL++ 
Sbjct: 70  ILRYADAKEE----GIIEKLYVTGCLSQRYKDDLEKEIPQVDAFFGTMEL---PMLLKK- 121

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
                  + DY  E   ER++     +       A++ I EGCD+ C+FC +P  RG  +
Sbjct: 122 ------FNADYKHELVGERITTTANHF-------AYMKIAEGCDRPCSFCAIPIMRGKHV 168

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR + ++V EA+ +  NG  EI L+ Q+   + G  +  +K   ++LL  LS+++G+  +
Sbjct: 169 SRPIEELVKEAKNMARNGTKEILLIAQDST-YYGLDIY-KKRNLAELLRQLSDVEGIEWI 226

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R   + P    + ++    + D +  YL +P+Q GS ++LK M R  T  +   +I RIR
Sbjct: 227 RLHYAFPTGFPEDILDVMAERDNICNYLDMPLQHGSTKMLKMMRRGTTHEKQAALIKRIR 286

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              P IA+ +  I G PGET++DF+  MD V    + +   F YS    T   +  + V 
Sbjct: 287 EKVPGIALRTTLIAGHPGETEEDFQEMMDFVRDTRFDRLGIFPYSHEENTHAYSFEDDVP 346

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQS-V 438
           E +K ER   + +   +     N   +G+  +VLI+K  KE G  VGR+    P + + V
Sbjct: 347 EEIKQERADAVMELQTQISHELNQEKIGKTFKVLIDK--KEGGFFVGRTEHDSPEVDNEV 404

Query: 439 VLNSKNH--NIGDIIKVRITDVKISTLYGEL 467
           ++++  +   IGD + V ITD     LYG L
Sbjct: 405 LIDATENYVRIGDFVDVEITDATEFDLYGNL 435


>gi|320539647|ref|ZP_08039311.1| putative truncated isopentenyl-adenosine A37 tRNA methylthiolase
           [Serratia symbiotica str. Tucson]
 gi|320030259|gb|EFW12274.1| putative truncated isopentenyl-adenosine A37 tRNA methylthiolase
           [Serratia symbiotica str. Tucson]
          Length = 407

 Score =  388 bits (998), Expect = e-106,   Method: Composition-based stats.
 Identities = 164/376 (43%), Positives = 235/376 (62%), Gaps = 7/376 (1%)

Query: 95  IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR-VVDTD 153
            ++   L++ V GCVA  EGE I  R+P V+VV GPQT +RLPE++   +  +  +VD  
Sbjct: 3   KEKNPALIIGVGGCVASQEGEHIRSRAPCVDVVFGPQTLHRLPEMINHVQGTRSPIVDIS 62

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           +   +KF+RL        R  G  AF++I EGC+K+CTFCVVPYTRG E+SR    V+ E
Sbjct: 63  FPEIEKFDRLP-----EPRAEGPCAFVSIMEGCNKYCTFCVVPYTRGEEVSRPSDDVLFE 117

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
             +L   GV E+ LLGQNVNA+R    DG+ CTF++LL  +  I G+ R+R+TTSHP + 
Sbjct: 118 IAQLAAQGVREVNLLGQNVNAYRATTYDGDICTFAELLRLVGAIDGIDRIRFTTSHPIEF 177

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
           +D +I  + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II ++R VRP++  SS
Sbjct: 178 TDDVIAVYEDTPELVSFLHLPVQSGSDRILTMMKRAHTALEYKAIIRKLRKVRPNMQFSS 237

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLC 393
           DFI+GFPGET  DF  T+ L+ ++ +  +FSF YSPR GTP + M++ V E  K +RL  
Sbjct: 238 DFIIGFPGETQADFEQTLKLIAEVNFDASFSFIYSPRPGTPAAEMIDDVSEEEKKQRLYI 297

Query: 394 LQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNSKNHNIGDIIK 452
           LQ ++ +Q + F+   +G +  +L+E   ++   +L GR+   + V        IG  + 
Sbjct: 298 LQDRINQQVLQFSRRMLGSVQRILVEGTSRKNVMELAGRTECNRMVNFEGSPEMIGQFVD 357

Query: 453 VRITDVKISTLYGELV 468
           V IT+V   +L G +V
Sbjct: 358 VEITEVWAHSLRGTVV 373


>gi|328787511|ref|XP_393868.4| PREDICTED: CDK5RAP1-like protein-like [Apis mellifera]
          Length = 596

 Score =  388 bits (998), Expect = e-106,   Method: Composition-based stats.
 Identities = 156/479 (32%), Positives = 250/479 (52%), Gaps = 41/479 (8%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           Q+ + + YGCQMNV D+  +  +  S GY++V  + +A++I+  TC IR+ A +K+++ L
Sbjct: 110 QKVYFEVYGCQMNVNDTEVIWSILKSHGYKKVEDIKEANIILFITCSIRDNAEQKIWNRL 169

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             + +L   + K+   + + + GC+A+   ++IL R  +V+V+ GP +Y  LP LL    
Sbjct: 170 TDLNHL--RKKKKKNPIKIGLLGCMAERLKDKILERGKLVDVIAGPDSYKDLPRLL-SIP 226

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
             +  ++   S ++ +  ++ V          +AF+TI  GCD  CT+C+VP+TRG E S
Sbjct: 227 DNETAINVVLSFDETYADITPVRLN---PNSTSAFVTIMRGCDNMCTYCIVPFTRGRERS 283

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG------------LDGEKC------- 245
           R +  +V E + L D+GV EI LLGQNVN++R                 G K        
Sbjct: 284 RPIESIVKEIQSLSDDGVKEIVLLGQNVNSYRDMSQLKLYTNMETHLAKGFKTVYKNKKG 343

Query: 246 --TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
              F DLL  +S I   +R+R+T+ HP+D  D +++   +   +   +HLP QSG+ RIL
Sbjct: 344 GRRFCDLLDEVSRINPEMRIRFTSPHPKDFPDEVLQLIAERPNICKEIHLPAQSGNSRIL 403

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           + M R +T   Y  ++  IR + P+I +SSDFI GF GET+++F+ T+ L++ I Y +AF
Sbjct: 404 EKMRRGYTREAYIDLVHHIRQIIPNIYLSSDFITGFCGETEEEFQDTLSLIELIKYNKAF 463

Query: 364 SFKYSPRLGTPGSNML-EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422
            F YS R  T       + V  NVK  RL  +  K R +    N   +GQ   VL+EK  
Sbjct: 464 LFSYSMREKTTAHRRYQDDVPPNVKQNRLERMISKYRTEAEKLNKLQIGQSQLVLVEKPS 523

Query: 423 KEK-GKLVGRSPWLQSVVLNS------------KNHNIGDIIKVRITDVKISTLYGELV 468
           K        ++     V++ S            K   IGD + V+I +    TL G+ +
Sbjct: 524 KRSHDSFQTKNDGNTRVIIPSMSIPIGKHSRDEKPIKIGDYVVVKIENANFQTLMGKPL 582


>gi|37523886|ref|NP_927263.1| hypothetical protein gll4317 [Gloeobacter violaceus PCC 7421]
 gi|81708224|sp|Q7NDB8|RIMO_GLOVI RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|35214892|dbj|BAC92258.1| gll4317 [Gloeobacter violaceus PCC 7421]
          Length = 437

 Score =  388 bits (998), Expect = e-106,   Method: Composition-based stats.
 Identities = 126/449 (28%), Positives = 214/449 (47%), Gaps = 19/449 (4%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           +P    V   GC+ N  D+  M  +    GY+  +  D A+ +++NTC     A  +   
Sbjct: 1   MPATIAVTHLGCEKNRIDTEHMLGLLAQAGYQIDSDEDKAEYVLVNTCSFIGPARTESVR 60

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            L  +               +++AGC+ Q   +E+L+  P    +VG   Y+R+ E++ER
Sbjct: 61  TLVNLAE---------QGKKIIIAGCLPQMFRDELLKEIPEAVAIVGTGDYHRIVEVVER 111

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           +R G+RV     +     +        Y       A+L I EGCD  C FC++P+ RG +
Sbjct: 112 SRTGERVSLVSATPTYIADEHLP---RYRTTTEAVAYLKIAEGCDYRCAFCIIPHLRGDQ 168

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR +  +V EA++L   GV E+ L+ Q ++   G  L G K   +DLL +L E+  +  
Sbjct: 169 RSRPIESIVAEAKQLASEGVKELILISQ-ISTNYGLDLYG-KPRLADLLRALGEVD-IPW 225

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R   ++P  ++D L+ A      ++PY  +P+Q     +L++MNR   A    ++++RI
Sbjct: 226 VRVHYAYPTGLTDELLTAVEQTANVLPYFDVPLQHSHPEVLRAMNRPWQADLNTRLLERI 285

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R   P+  + +  IVGFPGE++  F      V++  +     F YS    T  +N+  Q+
Sbjct: 286 RERLPEATLRTTLIVGFPGESEAHFAHLCAFVERSEFDHVGVFAYSREENTAAANLEGQI 345

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSV 438
            E +K  R   L +  +      N + VG+++ VLIE+   +K   +GR    SP +   
Sbjct: 346 PEAIKKRRRRDLMRLQQTISQRRNASQVGRVVPVLIEQENTQKKVWLGRSARFSPEIDGQ 405

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGEL 467
           V+      +  +I VRIT      L GE+
Sbjct: 406 VIVCGGAALNQLIPVRITAATPYDLCGEV 434


>gi|113955194|ref|YP_731737.1| tRNA modifying protein [Synechococcus sp. CC9311]
 gi|123327578|sp|Q0I735|RIMO_SYNS3 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|113882545|gb|ABI47503.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Synechococcus sp.
           CC9311]
          Length = 470

 Score =  388 bits (998), Expect = e-106,   Method: Composition-based stats.
 Identities = 125/453 (27%), Positives = 221/453 (48%), Gaps = 26/453 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA-AEKVYSFL 84
                  GC+ N  D+  M  +    GY   +  +DA+L+V+NTC   + A  E V + +
Sbjct: 21  TVAFAHLGCEKNRVDTEHMLGLLAEAGYGVSSDENDANLVVVNTCSFIQDAREESVRTLV 80

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           G     K           +++AGC+AQ   +E+L   P    +VG   Y  + E+L++  
Sbjct: 81  GLAEQGKE----------LIIAGCLAQHFQDELLESIPEAKAIVGTGDYQHIVEVLQQVE 130

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G+RV     +     +        Y       A+L + EGCD  C FC++P+ RG + S
Sbjct: 131 AGERVNRVSQTPTFVADENLP---RYRTTGEAVAYLKVAEGCDYRCAFCIIPHLRGNQRS 187

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R++  +V EA +L + GV E+ L+ Q +    G  L G K   +DLL +L +++ +  +R
Sbjct: 188 RTIESIVAEAHQLAEQGVQELILISQ-ITTNYGLDLYG-KPRLADLLKALGDVE-IPWIR 244

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
              ++P  ++  ++ A+ D+  ++PYL LP+Q     +L++MNR   A    +++D+IR 
Sbjct: 245 VHYAYPTGLTPAVLAAYRDVPNVLPYLDLPLQHSHPEVLRAMNRPWQADVNERLLDQIRE 304

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             P+  + +  IVGFPGET+D F      +++  +     F +SP  GT  + + + V +
Sbjct: 305 QLPNAILRTTLIVGFPGETEDQFEHLAGFLERQRFDHVGIFTFSPEDGTAAATLPDSVPD 364

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVVL 440
            +   R   L    +    + N + +G+ ++VL+E+H    G+++GR    +P +   VL
Sbjct: 365 EIAIARKDKLMTLQQPISAARNASWIGKTVDVLVEQHNPSTGEMIGRCSRFAPEVDGEVL 424

Query: 441 --NSKNHN---IGDIIKVRITDVKISTLYGELV 468
                N      G ++ V+IT   I  L G +V
Sbjct: 425 VQPGDNGLQVNPGTMVPVQITGADIYDLSGHVV 457


>gi|307130740|ref|YP_003882756.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Dickeya dadantii
           3937]
 gi|306528269|gb|ADM98199.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Dickeya dadantii
           3937]
          Length = 467

 Score =  388 bits (998), Expect = e-106,   Method: Composition-based stats.
 Identities = 137/456 (30%), Positives = 222/456 (48%), Gaps = 34/456 (7%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++    S GC  N+ DS R+     ++GY+ V S +DADL+++NTC   + A ++    +
Sbjct: 34  RKIGFVSLGCPKNLVDSERILTELRTEGYQVVPSYNDADLVIVNTCGFIDSAVQESLEAI 93

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           G              +  V+V GC+  A+  +I    P V  + GP +Y ++   +    
Sbjct: 94  GEA---------LNENGKVIVTGCLG-AKDNQIREVHPNVLEITGPHSYEQVLNHVHHY- 142

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
                        D F  L    G     R   A+L I EGCD  CTFC++P  RG   S
Sbjct: 143 -------VPKPEHDPFTSLIPAQGVKLTPRHY-AYLKISEGCDHRCTFCIIPSMRGDLDS 194

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYSLSE 256
           R +  V+DEA++L D GV E+ ++ Q+ +A+      R    +G+  K +   L   LS 
Sbjct: 195 RPIGSVLDEAKRLADAGVKELLVISQDTSAYGADVKNRTGFWNGQPVKTSMVSLCEQLST 254

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           +   VRL Y   +P       + A G    ++PYL +P+Q  S +ILK M R        
Sbjct: 255 LGLWVRLHYVYPYPHVDDVIPLMAAG---KVLPYLDIPLQHASPKILKLMKRPGAVERTL 311

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
           + I R R + P++ + S FIVGFPGET++DF+  +D + +    +   F+YSP  G   +
Sbjct: 312 ERIKRWREICPELTLRSTFIVGFPGETEEDFQMLLDFLQEAQLDRVGCFRYSPVEGAAAN 371

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPW 434
           ++ +QV E VK ER     +  ++       A VG+ ++VLI++  +E   G+ +  +P 
Sbjct: 372 DLPDQVPEEVKEERYHRFMQIQQQISSQRLQAKVGRELKVLIDEVDEEGAIGRSMADAPE 431

Query: 435 LQS-VVLNSKN-HNIGDIIKVRITDVKISTLYGELV 468
           +   V LN +N   +GD++ V+I       L+G LV
Sbjct: 432 IDGAVYLNGENRVKVGDLVTVKIEHADEYDLWGSLV 467


>gi|67920439|ref|ZP_00513959.1| Protein of unknown function UPF0004:Conserved hypothetical protein
           1125 [Crocosphaera watsonii WH 8501]
 gi|67857923|gb|EAM53162.1| Protein of unknown function UPF0004:Conserved hypothetical protein
           1125 [Crocosphaera watsonii WH 8501]
          Length = 437

 Score =  388 bits (998), Expect = e-106,   Method: Composition-based stats.
 Identities = 132/447 (29%), Positives = 218/447 (48%), Gaps = 19/447 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
              +   GC+ N  DS  M  +  ++GY+   + + AD +++NTC   ++A E+    L 
Sbjct: 6   TIAISHLGCEKNRIDSEHMLGLLAAKGYDIDANEELADYVIVNTCSFIQEAREESVRTLV 65

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +               ++++GC+AQ   EE+L   P    +VG   Y ++ E+++R   
Sbjct: 66  ELAEANKK---------IIISGCMAQHFQEELLEELPEAVALVGTGDYQKIVEVVQRVET 116

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G+RV +   +     +  +     Y       A+L + EGCD  C FC++PY RG + SR
Sbjct: 117 GERVTEVTQNPSFVADETTP---RYRTTNEAVAYLRVAEGCDYRCAFCIIPYLRGNQRSR 173

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           S+  +V EA++L + GV EI L+ Q +    G  L G K   ++LL +L ++  +  +R 
Sbjct: 174 SIESIVREAQQLAEQGVQEIILISQ-ITTNYGLDLYG-KPKLAELLRALGQVD-VPWIRI 230

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
             ++P  ++  +I A  +   ++PYL LP+Q     ILKSMNR         IID+++  
Sbjct: 231 HYAYPTGLTQTVIDAIRETPNILPYLDLPLQHSHPNILKSMNRPWQGQVNDNIIDKLKKA 290

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P+    + FIVGFPGET++ F   +  V +  +     F +SP   TP   M  QV   
Sbjct: 291 IPNAIFRTTFIVGFPGETEEYFEHLIKFVKRHEFDHVGVFTFSPEEETPAYQMQNQVLPE 350

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVLN 441
           +  ER   L +  +      N   VG+ +EVLIE+   +  + +GRS    P +  VV  
Sbjct: 351 IAQERRNYLMEIQQPISAQKNQNYVGKTVEVLIEQENPQTQEHIGRSSRFAPEVDGVVYV 410

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                +  II V+IT   I  LYG+++
Sbjct: 411 QGEAPLNSIIPVKITHADIYDLYGKVI 437


>gi|304316648|ref|YP_003851793.1| MiaB-like protein tRNA modifying enzyme [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778150|gb|ADL68709.1| MiaB-like protein tRNA modifying enzyme [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 452

 Score =  388 bits (997), Expect = e-106,   Method: Composition-based stats.
 Identities = 144/448 (32%), Positives = 239/448 (53%), Gaps = 18/448 (4%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
            +     + GC++N Y++  M ++F + GY+ V+  + AD+ ++NTC +  +   K    
Sbjct: 20  KKIVSFFTLGCKVNQYETEAMVEIFKNSGYDVVDFDEYADVYIINTCTVTGRGDMKSRQE 79

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           + + +       K   D ++ V GC +Q    E+L   P VN+V+G +    + +L+E+ 
Sbjct: 80  IRKAK-------KINPDSIIAVVGCYSQVASNEVLN-LPEVNIVLGTKNKGEVVKLVEKV 131

Query: 144 RFGKRVVDTDYSVED--KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
              K  ++   ++ D  KFE L I      ++    A+L IQ+GC++FCT+C++PY RG 
Sbjct: 132 SGDKEKINAVENIFDNKKFEELKIS----AQEGHTRAYLKIQDGCNQFCTYCIIPYARGP 187

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
             SR    ++DE ++L DNG  E+ L G +V ++   G D E     D++  + E+ G+ 
Sbjct: 188 VRSRRPDNILDEVKRLRDNGYKEVILTGIHVASY---GKDLENINLLDIIKMIHEVDGIE 244

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R ++  P  +++  IK    L     + H+ +QSGSD  LK M R++T  EY +IIDR
Sbjct: 245 RIRMSSIEPTFLTEDFIKEVASLPKFCRHYHVSLQSGSDSTLKRMGRKYTTSEYMEIIDR 304

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           IR    D+AI++D +VGFPGETD++F  T + +  I +++   FKYS R GT  +N  +Q
Sbjct: 305 IRKYIKDVAITTDVMVGFPGETDEEFNETYEFLKSIEFSKMHVFKYSRRAGTKAANYPDQ 364

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRSPWLQSVVL 440
           V  +VK ER   L K   E +  F    VG  + VL E+  K+ +G + G +     V +
Sbjct: 365 VKNSVKEERSKKLIKLSEENEAKFYKKFVGSTLNVLFEQSVKDVEGYVEGLTDNYIRVAV 424

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
            S       I+ V++  VK     G+LV
Sbjct: 425 ESDLKIKNKILPVKLIGVKEDFAIGKLV 452


>gi|299144058|ref|ZP_07037138.1| 2-methylthioadenine synthetase [Peptoniphilus sp. oral taxon 386
           str. F0131]
 gi|298518543|gb|EFI42282.1| 2-methylthioadenine synthetase [Peptoniphilus sp. oral taxon 386
           str. F0131]
          Length = 438

 Score =  388 bits (997), Expect = e-105,   Method: Composition-based stats.
 Identities = 138/448 (30%), Positives = 230/448 (51%), Gaps = 19/448 (4%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
               + GC  N  D+ +M+ +  S+ Y   N+++DA++I++NTC   + A E+    +  
Sbjct: 4   IHFITLGCSKNEVDTSQMQSILDSKKYIITNNVNDANVIIINTCGFIDAAKEESVDTIIE 63

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
               K+     G    +++AGC+AQ   +E++   P V+ ++G      +  +L+ A  G
Sbjct: 64  AAKYKD----VGKCKKLILAGCLAQRYSKELMEEIPEVDAILGTGNIININNILDSAFNG 119

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           +R+V  D ++ DK+     ++G    K  VT ++ I EGC+  CT+C++P  RG   SR 
Sbjct: 120 ERIVKVD-NINDKY-----IEGIKKSKVSVTEYVKISEGCNNNCTYCIIPKLRGRNRSRK 173

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
           +  + DE + L++NG  E+ L+ QN     G   + ++    DL+  LSEIK L  +R  
Sbjct: 174 IEDIYDEVKYLVNNGTREVILIAQNTT-DYGID-NYKEYKLKDLVKKLSEIKDLKWIRLM 231

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
             +P + +D LI    + D L+ Y+ +P+Q  SD IL  MNR+       +++ ++R+  
Sbjct: 232 YLYPDNFTDELIDEFKNNDKLLNYVDIPLQHISDNILSKMNRKTNRNNISELLFKLRNNI 291

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           P+I I + FIVGFPGE + DF    + +++  + +  +F YS    TP  NM  Q+ ENV
Sbjct: 292 PNIIIRTTFIVGFPGEENSDFNELNEFIEENKFDKLGAFIYSREEDTPAFNMNNQIQENV 351

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVLNS 442
           K +RL  L         +   + +G I+EVLIE+   +    VGRS    P +  VV   
Sbjct: 352 KQKRLDILMSTQISISENKLSSNIGNILEVLIEEIA-DNETYVGRSYMDAPEIDGVVYVK 410

Query: 443 K--NHNIGDIIKVRITDVKISTLYGELV 468
              N  IG    V+ITD     L G+ +
Sbjct: 411 SKNNLKIGSFYNVKITDYLEYDLIGDAI 438


>gi|31790361|gb|AAP58618.1| putative 2-methylthioadenine synthetase [uncultured Acidobacteria
           bacterium]
          Length = 450

 Score =  388 bits (997), Expect = e-105,   Method: Composition-based stats.
 Identities = 118/454 (25%), Positives = 207/454 (45%), Gaps = 16/454 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC  N+ DS  M     + GYE      +AD +V+NTC   + A ++    + 
Sbjct: 3   KVGFISLGCPKNLVDSEVMMGQLKANGYELTADASEADTVVVNTCGFIDSAKQESIDTIL 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
               LK+    +G    ++VAGC+ +   +E+    P V+  +G      +  + +    
Sbjct: 63  EAARLKS----DGKATRIIVAGCLVERYRDELKASIPEVDAFIGTSQINDILSVCDPHTN 118

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            + +       +                    AF+ I EGCD+ C FC +P  RG   SR
Sbjct: 119 TRALPVIPLGNQSATYLYDESTPRVLATPSHYAFIKIAEGCDRPCAFCFIPQMRGHFRSR 178

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
               +V EA++L + GV E+ L+ Q+ ++  G+ L G+    + LL  LS   G+  +R 
Sbjct: 179 RFGSIVAEAQQLAEEGVKELILVAQD-SSRYGEDL-GKDDALAHLLRELSHTDGIEWVRV 236

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
             ++P  +SD  ++   +    + YL +P+Q  S  +LK M R        ++I R+R  
Sbjct: 237 MYTYPTHISDGFLEVLAEEAKAVKYLDMPLQHASQNVLKLMKRGGNRASLERLIKRVRDR 296

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P+IA+ + FI GFPGETD+DF   +  V  + + +   F YS   GTP  ++  +V+  
Sbjct: 297 VPEIAVRTTFITGFPGETDEDFEELLTFVKNVEFDRVGVFTYSDEEGTPAYDLPNKVEPK 356

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-----GKLVGRSPWLQSVVL 440
           +  +R   L K+  +     + A +G+ + V+ E    E      G++  ++P +   VL
Sbjct: 357 IAKQRRARLMKEQAKIAKRKHKAMIGRQVRVIFEGESSESELLWQGRMETQAPDIDGCVL 416

Query: 441 NSK-----NHNIGDIIKVRITDVKISTLYGELVV 469
            +          G+++ V IT+ +   L G +VV
Sbjct: 417 INDAPEDFAPMPGEMLHVMITEAQEYDLVGRIVV 450


>gi|307264932|ref|ZP_07546494.1| MiaB-like tRNA modifying enzyme YliG [Thermoanaerobacter wiegelii
           Rt8.B1]
 gi|306920190|gb|EFN50402.1| MiaB-like tRNA modifying enzyme YliG [Thermoanaerobacter wiegelii
           Rt8.B1]
          Length = 436

 Score =  388 bits (997), Expect = e-105,   Method: Composition-based stats.
 Identities = 129/448 (28%), Positives = 224/448 (50%), Gaps = 20/448 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +   + S GC  N  DS +M  +   +GY  VN  + AD++++NTC   E A  +   ++
Sbjct: 2   KNVGIISLGCPKNTVDSEKMLAILKEKGYNIVNDKNKADILIINTCGFIEDAKRESIEYI 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             +  LKN R+K      ++  GC+++   +E+L+  P ++ V+G   + ++ E++E   
Sbjct: 62  IEMGKLKNRRLKY-----LIATGCLSERYNKELLKELPELDAVIGTGDFPKIAEVIEEIE 116

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            GK V++  ++     E +  +            +L I EGC   C+FC++P  RG   S
Sbjct: 117 KGKTVLEYGHANLLNDEGIQRI----LTTPNYYTYLKIAEGCSNACSFCIIPKIRGRYRS 172

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R +  ++ EA +L+  G  E+ L+ Q+     G  +  +K     LL  +S+I GL  +R
Sbjct: 173 RKMEDILREAEELVKKGAKELILIAQDTT-KYGVDVY-KKFMLPQLLKEISKIDGLKWIR 230

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
              ++P  +++ L++   + + ++ Y+ +P+Q   D +LK MNR     +  ++I R+RS
Sbjct: 231 LLYAYPDSVTEELVEEIKNNEKIVKYIDIPLQHSHDEVLKRMNRNTNRQKIEEVISRLRS 290

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             P++ I + F+VGFPGET+++F      V +  + +   F YS   GT    M  Q+ +
Sbjct: 291 -IPNMVIRTTFMVGFPGETEEEFEDLKQFVKEKRFERVGVFTYSREEGTKSYYMKPQIKK 349

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVL 440
           NVK +R   L +  +E     N + +G+ +EVLIE    E G   GRS    P +  VV 
Sbjct: 350 NVKIKRQQELMEIQKEISYQHNLSKIGKQLEVLIEGF--EDGIYYGRSYMDAPEIDGVVY 407

Query: 441 --NSKNHNIGDIIKVRITDVKISTLYGE 466
             + K    GD +   ITD     L GE
Sbjct: 408 VKSDKKLKAGDFVVATITDAYEYDLVGE 435


>gi|302832307|ref|XP_002947718.1| hypothetical protein VOLCADRAFT_57473 [Volvox carteri f.
           nagariensis]
 gi|300267066|gb|EFJ51251.1| hypothetical protein VOLCADRAFT_57473 [Volvox carteri f.
           nagariensis]
          Length = 453

 Score =  388 bits (997), Expect = e-105,   Method: Composition-based stats.
 Identities = 167/445 (37%), Positives = 247/445 (55%), Gaps = 23/445 (5%)

Query: 35  QMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSR 94
           QMN+ DS RM  +  + GYE       AD+++ NTC IREKA +KVYS LG+    K  R
Sbjct: 1   QMNMADSERMAGVLEAVGYECSQDASQADVLIYNTCSIREKAEQKVYSALGKQAKRKRDR 60

Query: 95  IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDY 154
           +   GDL +VVAGCVAQ EG+ +LRR P +++V+GPQ   R+ +LL++A   +       
Sbjct: 61  V---GDLKIVVAGCVAQQEGQTLLRRVPELDIVMGPQFANRIHDLLDQANDAQVCATEQV 117

Query: 155 SVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEA 214
           +VE+             R+  +TA++ +  GC++ CT+CVVPYTRG E SR    +  E 
Sbjct: 118 AVEEDI-------TTPRRESNITAWVNVIYGCNEKCTYCVVPYTRGAEQSRRPDDIRREM 170

Query: 215 RKLIDNGVCEITLLGQNVNAWRGKGLDG--------EKCTFSDLLYSLSEIKGLVRLRYT 266
             L + G  E+TLLGQN++A  G+ L G           TF+DLL  + ++ G+ R+R+ 
Sbjct: 171 LALGEAGYKEVTLLGQNIDA-YGRDLPGLAADASGRRAWTFTDLLRHVHDVPGIERIRFA 229

Query: 267 TSHPRDMS--DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           TSHPR  +    L++A  +L  L  + H+P QSG + IL+ M R +T   YR IID IR 
Sbjct: 230 TSHPRYFTGKHRLVRACAELPKLCEFFHIPFQSGDNDILREMKRGYTHERYRAIIDNIRR 289

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             PD +IS D IVGFPGET++ + AT  LV ++G+ +  +  YSPR  TP +    QV +
Sbjct: 290 YMPDASISGDAIVGFPGETEEQYLATERLVREVGFDRVNTAAYSPRPNTPAAEWDNQVAD 349

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLNSK 443
            +K +RL  L K + +          G+ +EVL+E    K   +  GR    + V  +  
Sbjct: 350 LIKQDRLNRLNKVVMDVATERAQRFQGRTLEVLVEGPNPKNPRQAFGRIRHNKLVYFDGD 409

Query: 444 NHNI-GDIIKVRITDVKISTLYGEL 467
            + + G ++  RI      +L+G L
Sbjct: 410 GNELRGKLVLARIDQCNAFSLFGTL 434


>gi|313904016|ref|ZP_07837396.1| MiaB-like tRNA modifying enzyme YliG [Eubacterium cellulosolvens 6]
 gi|313471165|gb|EFR66487.1| MiaB-like tRNA modifying enzyme YliG [Eubacterium cellulosolvens 6]
          Length = 453

 Score =  388 bits (997), Expect = e-105,   Method: Composition-based stats.
 Identities = 130/453 (28%), Positives = 217/453 (47%), Gaps = 24/453 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC  N+ D+  M      +GYE  +   +A++I++NTC   + A E+  + + 
Sbjct: 2   KVLFISLGCDKNLVDAEHMLGSLAGRGYEMTDDETEAEIIIVNTCCFIDSAKEESVNTIL 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +   K      G    ++V GCVA+   EE+L   P V+ +VG  +Y ++ E + +   
Sbjct: 62  DMARYKTE----GKCHTLIVTGCVAERYKEEVLEEIPEVDAIVGTNSYNKIEEAILKVGE 117

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRK----RGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           G R            E L+ +  G  R+     G   +L I EGCD+ CT+C +P  RG 
Sbjct: 118 GARPA--------ILEPLNYIPKGEKRRVMATGGFFEYLKIAEGCDRHCTYCAIPDMRGP 169

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
             S  +  +++EAR L  +GV E+ L+ Q      G  L  EK     LL  L +I+ + 
Sbjct: 170 YRSVPMEDLLEEARGLAADGVKELILVAQETT-LYGTDLYNEK-RLHILLKELCKIEDIH 227

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
            +R    +P ++   LI+   +   +  Y+ +P+Q  +D ILK M R+ +  +  ++++ 
Sbjct: 228 WIRVLYCYPEEIYPELIQTMKEEPKICHYMDIPIQHANDEILKKMGRKTSRADLVRVVNT 287

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R   PDIAI +  I GFPGET+  F    D + ++ + +   F YS   GT  + M  Q
Sbjct: 288 LRQEIPDIAIRTTLITGFPGETEAQFEDVCDFIREMKFDRLGVFTYSCEEGTAAARMDGQ 347

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQS 437
           +DE V  +R   L    +E       + +G  +EV IE +  ++   VGR+    P +  
Sbjct: 348 IDEEVMKDRQDALMTIQQEISSERGQSLIGSTLEVFIEGYMSQENAYVGRTYADIPNVDG 407

Query: 438 VVL--NSKNHNIGDIIKVRITDVKISTLYGELV 468
           ++    S+  N GD +KV +T      L G+LV
Sbjct: 408 MIFIQTSETLNSGDFVKVLVTAAMEYDLIGQLV 440


>gi|218548354|ref|YP_002382145.1| ribosomal protein S12 methylthiotransferase [Escherichia fergusonii
           ATCC 35469]
 gi|238065355|sp|B7LMZ9|RIMO_ESCF3 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|218355895|emb|CAQ88510.1| putative AdoMet-dependent methyltransferase, UPF0004 family
           [Escherichia fergusonii ATCC 35469]
 gi|325496777|gb|EGC94636.1| ribosomal protein S12 methylthiotransferase [Escherichia fergusonii
           ECD227]
          Length = 441

 Score =  388 bits (997), Expect = e-105,   Method: Composition-based stats.
 Identities = 134/455 (29%), Positives = 219/455 (48%), Gaps = 34/455 (7%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC  N+ DS R+     ++GY+ V S DDAD++++NTC   + A ++    +G
Sbjct: 9   KIGFVSLGCPKNLVDSERILTELRTEGYDVVPSYDDADMVIVNTCGFIDSAVQESLEAIG 68

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                         +  V+V GC+  A+ ++I    P V  + GP +Y ++ E +     
Sbjct: 69  EA---------LNENGKVIVTGCLG-AKEDQIREVHPKVLEITGPHSYEQVLEHVHHY-- 116

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                       + F  L + + G        A+L I EGC+  CTFC++P  RG  +SR
Sbjct: 117 ------VPKPKHNPFLSL-VPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGDLVSR 169

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNA------WRGKGLDGE--KCTFSDLLYSLSEI 257
            +  V+ EA++L+D GV EI ++ Q+ +A       R    +GE  K +   L   LS++
Sbjct: 170 PIGDVLSEAKRLVDAGVKEILVISQDTSAYGVDVKHRTGFYNGEPVKTSMVSLCEQLSKL 229

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
               RL Y   +P       + A G    ++PYL +P+Q  S RILK M R  +      
Sbjct: 230 GIWTRLHYVYPYPHVDDVIPLMAEG---KILPYLDIPLQHASPRILKLMKRPGSVDRQLA 286

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
            I + R + P++ + S FIVGFPGET++DF+  +D + +    +   FKYSP  G   + 
Sbjct: 287 RIKQWREICPELTLRSTFIVGFPGETEEDFQMLLDFLKEARLDRVGCFKYSPVEGADANA 346

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPWL 435
           + +QV E VK ER     +  ++         VG+ I V+I++   E   G+ +  +P +
Sbjct: 347 LPDQVPEEVKEERWNRFMQLQQQISAERLQEKVGKEILVIIDEVDDEGAIGRSMADAPEI 406

Query: 436 QS-VVLNSK-NHNIGDIIKVRITDVKISTLYGELV 468
              V LN + N   GDI++V++       L+G  V
Sbjct: 407 DGAVYLNGESNVKPGDIVRVKVEHADEYDLWGSRV 441


>gi|260655072|ref|ZP_05860560.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Jonquetella anthropi
           E3_33 E1]
 gi|260630183|gb|EEX48377.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Jonquetella anthropi
           E3_33 E1]
          Length = 432

 Score =  388 bits (996), Expect = e-105,   Method: Composition-based stats.
 Identities = 143/441 (32%), Positives = 226/441 (51%), Gaps = 11/441 (2%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           +K YGCQMN YD+ +++    + G+      + AD ++   C IR+KA  KV+S LGR  
Sbjct: 1   MKVYGCQMNQYDASKIQTALTALGWHET-DEETADAVIFVACSIRDKAEHKVWSELGRYA 59

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR-FGK 147
               +  K      V V  C+AQ  G E+  R P V VV GP+    LP  L  A   G 
Sbjct: 60  ERWQAEGKP----AVAVTSCIAQNVGTEMAGRFPWVRVVSGPRHIGDLPAALSDALDNGN 115

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
           R    D   +D      +      R     A +TI  GCD FCT+C+VPY RG   SR  
Sbjct: 116 RHTLLD---DDPRAVRELDVPPSVRSFQWKASVTISHGCDNFCTYCIVPYVRGRFASRPA 172

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
            +++ E R L+  G  EITLLGQNV+ W      G +  F+DLL  ++   G+  LR+ T
Sbjct: 173 EEILAEVRSLVAGGAKEITLLGQNVDTWGLDCPGGMR--FADLLELVAREPGVEWLRFMT 230

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
           S+P D +  +++       + P ++LP+Q+GS+R+L++MNRR++  EY   +  IR   P
Sbjct: 231 SYPTDFTVDVVETMVRHSNICPSINLPIQAGSERVLRAMNRRYSLEEYADTMKLIRDGLP 290

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
           ++ ++SD IVGFPGET+++F+ ++  +++  +    +  YSPR GTP + M  Q+   VK
Sbjct: 291 EVGLTSDLIVGFPGETEEEFQCSLAALERFRFDMVHTAAYSPRQGTPAAKMKNQIPAAVK 350

Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNI 447
             RL  +           N + VG+  +VL++    +   +  R+   + V+L     + 
Sbjct: 351 ERRLNEVNDLQTSIARQINQSLVGRTYKVLVDGPAPKGDYMEARTATDKVVLLKGAGASF 410

Query: 448 GDIIKVRITDVKISTLYGELV 468
           G  +  +I   +   L G ++
Sbjct: 411 GQFVTAKIDSAESWCLKGTVL 431


>gi|254479101|ref|ZP_05092453.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Carboxydibrachium
           pacificum DSM 12653]
 gi|214034950|gb|EEB75672.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Carboxydibrachium
           pacificum DSM 12653]
          Length = 436

 Score =  388 bits (996), Expect = e-105,   Method: Composition-based stats.
 Identities = 125/448 (27%), Positives = 226/448 (50%), Gaps = 20/448 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +   + S GC  N  DS +M  +   +GY  VN    AD+I++NTC   E A ++   ++
Sbjct: 2   KNIGIISLGCPKNSVDSEKMLALLKEKGYNIVNDEKKADVIIINTCAFIEDAKKESIEYI 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            ++  LK  R+K      ++  GC+++   +E+++  P ++ V+G   + ++ +++E  +
Sbjct: 62  IQMGELKKKRLKY-----LIATGCLSERYNKELIKELPELDAVIGTGDFTQIVDVIEEVK 116

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            GK+V+   +      E +  +           A+L I EGC   C+FC++P  RG   S
Sbjct: 117 KGKKVLKYGHPDLLNDEGIPRI----LTTPPYYAYLKIAEGCSNACSFCIIPKLRGKYKS 172

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R +  +++EA++L   GV E+ ++ Q+     G  L  +K     LL  LS+I+ L  +R
Sbjct: 173 RKMENIIEEAQELARKGVKELIIIAQDTT-KYGIDLY-KKLMLPQLLRELSKIEELKWIR 230

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
              ++P  ++D LI+   + + ++ Y+ +P+Q  S+ +LK MNR  T  +  ++I ++RS
Sbjct: 231 LLYAYPDSVTDELIEEIKNNEKIVKYIDIPLQHSSESVLKRMNRGTTRRKIEEVISKLRS 290

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             P + + + F+VGFPGET+++F    + + +  + +   F YS   GT    M  Q+ +
Sbjct: 291 -IPGMVMRTTFMVGFPGETEEEFEDLKNFIKEKRFERVGVFTYSREEGTKSYYMKPQIRK 349

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVL 440
            VK +R   L +  ++    FN + +G  +EVLIE    E G   GRS    P +  +V 
Sbjct: 350 KVKLKRQEELMEIQKQISYEFNMSKIGTKLEVLIEGF--EDGVYYGRSYMDAPEIDGLVY 407

Query: 441 NSKNHN--IGDIIKVRITDVKISTLYGE 466
                    GD + V + D     L GE
Sbjct: 408 VRSEKKLFPGDFVTVTVVDAFEYDLVGE 435


>gi|224436855|ref|ZP_03657844.1| hypothetical protein HcinC1_02771 [Helicobacter cinaedi CCUG 18818]
          Length = 452

 Score =  388 bits (996), Expect = e-105,   Method: Composition-based stats.
 Identities = 154/449 (34%), Positives = 249/449 (55%), Gaps = 21/449 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + F+++ GC MN  DS  +       + Y   ++  +ADLI++NTC +REK  +K++S +
Sbjct: 2   KLFIQTLGCAMNERDSAHIIAELKEKKQYTLTDNAKEADLILINTCSVREKPEKKLFSEI 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           G+    K S  K      + + GC A   GEEI++++P V+ V+G +   ++ ++L+R  
Sbjct: 62  GQFAKEKKSGAK------IGICGCTASHLGEEIIKKAPSVDFVLGARNVSKITQVLDRP- 114

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
              + V+ D   +D     +          G+ A L I  GCDK C++C+VP+TRG EIS
Sbjct: 115 ---KAVEVDIDYDDSTYVFASSQDM-----GIKAHLNISIGCDKKCSYCIVPFTRGKEIS 166

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG-LDGEKCTFSDLLYSLSEIKGLVRL 263
             +  +V+EA+KL+ NG  E+ LLGQNVN +  +     +K  F++LL +LSEI+GL R+
Sbjct: 167 IPIDLLVNEAKKLVANGAKELLLLGQNVNHYGVRFSTPHKKTNFTELLATLSEIEGLYRI 226

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+T+ HP  M D  ++       +   +H+P+QSGS +ILK M R +    Y   I +++
Sbjct: 227 RFTSPHPLHMDDEFLEEFARNPKIAKGIHIPLQSGSSQILKMMRRGYDKQWYLDRIAKLK 286

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ-- 381
           S+ P++ I +D IVGFP E++ DF  TM+++  + +   +SF YSPR  T   +  +   
Sbjct: 287 SLLPNVGIGTDIIVGFPTESEQDFEDTMEVLSIVEFDTLYSFVYSPRPHTSAYSYDKSML 346

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL--VGRSPWLQSVV 439
           V + V  ERL  LQ   ++         +G I EVLIE H  ++G+    GRS   + + 
Sbjct: 347 VPQEVAKERLSRLQNLHKQILQKKAQKEIGSIYEVLIENHRDDEGQTWSEGRSSQNKLIK 406

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
           +  +   IG II+V++T      LYGE V
Sbjct: 407 ILGRKCPIGSIIQVKVTHNDGGGLYGEFV 435


>gi|303240746|ref|ZP_07327259.1| MiaB-like tRNA modifying enzyme YliG [Acetivibrio cellulolyticus
           CD2]
 gi|302591634|gb|EFL61369.1| MiaB-like tRNA modifying enzyme YliG [Acetivibrio cellulolyticus
           CD2]
          Length = 452

 Score =  388 bits (996), Expect = e-105,   Method: Composition-based stats.
 Identities = 128/454 (28%), Positives = 220/454 (48%), Gaps = 15/454 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + ++  + S GC  N+ DS  M      + YE       AD+I++NTC   E A E+  +
Sbjct: 1   MKKKIGIVSLGCPKNLVDSEIMLGTLKKKDYEITPDEKHADIIIVNTCGFIESAIEESIN 60

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +  +   K          L++V GC+AQ   E+IL+  P V+ VVG   Y ++ E++++
Sbjct: 61  AILEMVGYKQ-----HKCRLLIVTGCLAQRYKEQILKEIPEVDAVVGTGGYGQIAEIIDK 115

Query: 143 ARFGKRVVDTDYSVEDKFERLS--IVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
               +     D  +   FE     + +      +   A+L I EGCD  CT+CV+P  RG
Sbjct: 116 LYEAEAKTPQDKRLFLDFEYNVEYMKEERVLSSKKGYAYLKIAEGCDNCCTYCVIPSLRG 175

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
              SRS+  ++ +A  L   GV E+ L+ Q++    G+ +  EK    +L+  +  I+G+
Sbjct: 176 PYTSRSMEDIIQDAGHLAKQGVKEVILVAQDIT-RYGEDIYNEKK-LVELIRQICRIEGI 233

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
             +R    +P ++ + LI        ++ YL +P+Q  SD+IL +M RR T      ++ 
Sbjct: 234 EWIRLLYCYPEEIDENLISEMASNPKILKYLDMPIQHASDKILSAMGRRGTFENLEALLT 293

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           +++   PDI I +  IVGFPGE + DFR     V K  + +   F YS   GT   +M  
Sbjct: 294 KLKERIPDIVIRTTLIVGFPGEDEKDFRILYGFVKKHQFDRLGVFPYSKEEGTLAFDMKP 353

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQ 436
           Q+  +VK  RL  + +  +E  +  N+A + ++  VL+E    +     GRS    P + 
Sbjct: 354 QIKRSVKESRLSDIMQLQKEIVLEKNNARLNKVYTVLVEGVADDGLFYTGRSYAEAPEID 413

Query: 437 SVVL--NSKNHNIGDIIKVRITDVKISTLYGELV 468
           +++   +      G  ++V+I ++    L GE+V
Sbjct: 414 NLIYFTSKDPLEFGSFVEVKILNIDEYDLIGEVV 447


>gi|220932034|ref|YP_002508942.1| MiaB-like tRNA modifying enzyme [Halothermothrix orenii H 168]
 gi|219993344|gb|ACL69947.1| MiaB-like tRNA modifying enzyme [Halothermothrix orenii H 168]
          Length = 442

 Score =  388 bits (996), Expect = e-105,   Method: Composition-based stats.
 Identities = 133/450 (29%), Positives = 220/450 (48%), Gaps = 21/450 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +  + S GC  N  DS  M       + +  V+ ++ AD+IV+NTC   + A E+    +
Sbjct: 3   KVGLISLGCPKNQVDSEIMLGFLSNDKNFTEVDDLELADVIVINTCGFIQDAKEESIETI 62

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
                 K+     G    ++V GC+ Q   EEIL   P V+ ++G   + ++   +++  
Sbjct: 63  LEAGQYKS----VGNCKALIVTGCLTQRYREEILENMPEVDAILGTGNFDKIIPTIKKVL 118

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G+RV +            +  D     +    A++ I EGCD  CT+C +PY RG   S
Sbjct: 119 KGQRVSNIGNPT------FNYNDVPRKIRTSHFAYVKIAEGCDNRCTYCSIPYIRGKLTS 172

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R +  + +E  KL   G+ EI L+ Q+     GK + G K     LL  L EI  +  +R
Sbjct: 173 RPIEDIYNEVVKLGQQGIKEIILVAQDTT-QYGKDIYG-KSMLLPLLKELVEIDSIKWIR 230

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
               +P  ++D L+    + + +  YL LP+Q  S++I + MNR+ +  E   +I R+R 
Sbjct: 231 LLYCYPERITDELLFFIAENNKICNYLDLPIQHSSNKIRRLMNRKGSREELINLIKRVRE 290

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           + PDI I +  IVGFPGETD+DF    + V +I + +   FKYS    TP ++   Q+ E
Sbjct: 291 LVPDIVIRTSLIVGFPGETDEDFNDLFNFVKEIKFDRLGVFKYSREENTPAASFPGQISE 350

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVL 440
            +K ER   + +  ++   + N   +G+ ++VLI++   E    +GR+    P + + V 
Sbjct: 351 KIKDERYNKIMEVQQKISRNKNQERIGEKVKVLIDELTDE--MAIGRTQYDAPEIDNQVY 408

Query: 441 NSKNHNI--GDIIKVRITDVKISTLYGELV 468
            S N  I  GD+I  R+T+     L GE +
Sbjct: 409 VSCNGKISEGDMILCRVTEAYEYDLLGECI 438


>gi|332799240|ref|YP_004460739.1| 30S ribosomal protein S12 methylthiotransferase rimO
           [Tepidanaerobacter sp. Re1]
 gi|332696975|gb|AEE91432.1| Ribosomal protein S12 methylthiotransferase rimO [Tepidanaerobacter
           sp. Re1]
          Length = 441

 Score =  388 bits (996), Expect = e-105,   Method: Composition-based stats.
 Identities = 123/449 (27%), Positives = 217/449 (48%), Gaps = 19/449 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC  N+ DS  M  +     Y   N+ ++A +I++NTC   ++A ++    + 
Sbjct: 4   KIGFISLGCDKNLVDSEYMLGILKKHNYTITNNENEAQIIIINTCGFIKEAKQESIDTIL 63

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +  LK    K G   L++  GC+AQ    E+L   P ++ V+G   + ++ E++++   
Sbjct: 64  EMAQLK----KLGKCRLLIATGCLAQRYKSELLTEIPELDAVIGTGDFDKICEVIQQLDS 119

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            K  +  +YS  D      +      R    T+F+ I EGCD +C++C +P+ RG   SR
Sbjct: 120 NKINLTNNYSFIDYDVHSRV------RIYPYTSFVKIAEGCDNYCSYCAIPFIRGSYRSR 173

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            +  + +E + L+  GV EI L+ Q+     G  + G + +  +LL  L +I G   +R 
Sbjct: 174 KIEAIKEEVKILVAQGVKEINLVAQDTT-NYGVDIYG-RPSLPELLQELIKIDGEYLIRI 231

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
             ++P +++  L+        +  YL +P+Q  +DRIL+ M R   +     +ID IRS 
Sbjct: 232 LYAYPTNINKELLDVMLSSKKIANYLDIPLQHFNDRILRLMGRPTNSQSIITLIDNIRSR 291

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P+I + + FIVGFP ET+ ++   +D + +  + +   FKYS    T  + ++ Q+ E 
Sbjct: 292 LPEITLRTTFIVGFPTETEAEYEQLLDFIREYKFDKVGVFKYSQEEDTVAAALMPQISEK 351

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPW-------LQSV 438
           +K +R   L K         N    G+I+ VLIE + +     +GRS         +  V
Sbjct: 352 IKQKRYNKLMKVQNSISKIKNQRFKGKILNVLIEGYDQANQIFIGRSENDAPFVDGIVKV 411

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGEL 467
           +  + N  +G I  V+I +     L G+L
Sbjct: 412 LCGNGNCELGQIYPVKILETYEYDLLGKL 440


>gi|261821225|ref|YP_003259331.1| ribosomal protein S12 methylthiotransferase [Pectobacterium
           wasabiae WPP163]
 gi|261605238|gb|ACX87724.1| MiaB-like tRNA modifying enzyme YliG [Pectobacterium wasabiae
           WPP163]
          Length = 437

 Score =  387 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 132/455 (29%), Positives = 219/455 (48%), Gaps = 34/455 (7%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R    S GC  N+ DS R+     ++GY+ V   DDA+L+++NTC   + A ++    +G
Sbjct: 5   RIGFVSLGCPKNLVDSERILTELRTEGYQVVPRYDDAELVIVNTCGFIDSAVQESLEAIG 64

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                         +  V+V GC+  A+  +I    P V  + GP +Y ++   + +   
Sbjct: 65  EA---------LNENGKVIVTGCLG-AKENQIREVHPKVLEITGPHSYEQVLSHVHQH-- 112

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                       + F  L + + G        A+L I EGC+  CTFC++P  RG   SR
Sbjct: 113 ------VPKPTHNPFTSL-VPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGDLDSR 165

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYSLSEI 257
            +  V+DEA++L+D GV E+ ++ Q+ +A+      R    +G+  K + + L   L+ +
Sbjct: 166 PIGSVLDEAKRLVDAGVKELLVISQDTSAYGADVKQRTGFWNGQPVKTSMASLCEQLASL 225

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
              VRL Y   +P       + A G    ++PYL +P+Q  S +ILK M R        +
Sbjct: 226 GVWVRLHYVYPYPHVDDVIPLMAEG---KILPYLDIPLQHASPKILKLMKRPGAVERTLE 282

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
            I R R + PD+ + S FIVGFPGET++DF+  +D + +    +   FK+SP  G   + 
Sbjct: 283 RIKRWREICPDLTLRSTFIVGFPGETEEDFQMLLDFLQEAKLDRVGCFKFSPVEGASANA 342

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPWL 435
           + +QV E VK ER     +  +          +G+ + VLI++  +E   G+ +  +P +
Sbjct: 343 LPDQVPEEVKEERFHRFMQLQQAISTQRLQDKIGREVLVLIDEIDEEGAIGRSMADAPEI 402

Query: 436 QS-VVLNSK-NHNIGDIIKVRITDVKISTLYGELV 468
              V LN +    +GDI+KV+I       L+G  V
Sbjct: 403 DGAVYLNGETGVKVGDIVKVKIEHADEYDLWGSRV 437


>gi|125972674|ref|YP_001036584.1| RNA modification protein [Clostridium thermocellum ATCC 27405]
 gi|256004833|ref|ZP_05429807.1| RNA modification enzyme, MiaB family [Clostridium thermocellum DSM
           2360]
 gi|125712899|gb|ABN51391.1| RNA modification enzyme, MiaB family [Clostridium thermocellum ATCC
           27405]
 gi|255991143|gb|EEU01251.1| RNA modification enzyme, MiaB family [Clostridium thermocellum DSM
           2360]
 gi|316941090|gb|ADU75124.1| RNA modification enzyme, MiaB family [Clostridium thermocellum DSM
           1313]
          Length = 434

 Score =  387 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 140/447 (31%), Positives = 238/447 (53%), Gaps = 18/447 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +R    + GC++N Y++  + +MF   GY+ V+  D+AD+ V+NTC +   +  K    +
Sbjct: 2   KRAAFYTLGCKVNQYETEAISEMFEKAGYKIVDFEDEADVYVINTCTVTNLSDRKSRQMI 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R +       +   + +V+V GC AQ   EE+  +   VN+VVG +   R+ E L+   
Sbjct: 62  RRAK-------RNNENSIVIVIGCYAQTAPEEV-SKIEGVNLVVGTKDRSRILEYLKELE 113

Query: 145 F--GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
              G+R    D     +FE L +       K    AF+ IQEGC++FCT+C++PY RG  
Sbjct: 114 TSGGRRNYVGDIMKTREFEELGVNVY----KERTRAFIKIQEGCNQFCTYCIIPYARGPV 169

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SRS   ++ E   L  +G  E+ L G +V ++   G D +  +  D++  + EI+G+ R
Sbjct: 170 RSRSEENILKEVSGLAHSGYKEVVLTGIHVASY---GKDIKNTSLIDIIRKVHEIEGIER 226

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R  +  P  +++  ++A   ++ L P  H+ +QSG D  LK MNR++T  EY + ++ +
Sbjct: 227 IRLGSIEPTTVTEEFVRAIKGMEKLCPQFHISLQSGCDSTLKRMNRKYTTKEYLRSVELL 286

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R    D+A+++D +VGFPGETD++F  T   V+K+ +A+   FKYS R GTP ++  +QV
Sbjct: 287 RENLKDVAVTTDVMVGFPGETDEEFNETCRFVEKVLFARMHVFKYSRRKGTPAASYPDQV 346

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVLN 441
               K ER   L +      + +N +  G+++ VL E+  K ++G + G +P    V   
Sbjct: 347 APQKKEERSRILIELASRMTLEYNKSFTGRVLPVLFEQEVKGKEGFMEGLTPNYIRVECK 406

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                 G I+ V + + K   + GE+V
Sbjct: 407 GDKDIEGQILNVLLREAKDDYIVGEIV 433


>gi|237730814|ref|ZP_04561295.1| Fe-S oxidoreductase 1 [Citrobacter sp. 30_2]
 gi|226906353|gb|EEH92271.1| Fe-S oxidoreductase 1 [Citrobacter sp. 30_2]
          Length = 435

 Score =  387 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 133/455 (29%), Positives = 223/455 (49%), Gaps = 34/455 (7%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC  N+ DS R+     ++GY+ V S DDAD++++NTC   + A ++    +G
Sbjct: 3   KIGFISLGCPKNLVDSERILTELRTEGYDVVPSYDDADMVIVNTCGFIDSAVQESLEAIG 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                         +  V+V GC+  A+ ++I    P V  + GP +Y ++ E +     
Sbjct: 63  EA---------LNENGKVIVTGCLG-AKVDQIREVHPKVLEITGPHSYEQVLEHVHHY-- 110

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                       + F+ L + + G        A+L I EGC+  CTFC++P  RG  +SR
Sbjct: 111 ------VPKPKHNPFQSL-VPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGDLVSR 163

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNA------WRGKGLDGE--KCTFSDLLYSLSEI 257
            +  V+ EA++L+D GV EI ++ Q+ +A       R    +GE  K +  DL   LS++
Sbjct: 164 PIGDVLSEAKRLVDAGVKEILVISQDTSAYGVDVKHRTGFHNGEPVKTSMVDLCEQLSKL 223

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
               RL Y   +P       + A G    ++PYL +P+Q  S RILK M R  +      
Sbjct: 224 GIWTRLHYVYPYPHVDDVIPLMAEG---KILPYLDIPLQHASPRILKLMKRPGSVDRQLA 280

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
            I + R + P++ + S FIVGFPGET++DF+  +D + +    +   FKYSP  G   ++
Sbjct: 281 RIKQWREICPELTLRSTFIVGFPGETEEDFQMLLDFLKEARLDRVGCFKYSPVEGAGAND 340

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPWL 435
           + +Q+ E VK ER     +  ++         VG+ I V++++  +E   G+ +  +P +
Sbjct: 341 LPDQIPEEVKEERWNRFMQLQQQISAERLQEKVGREILVIVDEVDEEGAIGRSMADAPEI 400

Query: 436 QS-VVLNSK-NHNIGDIIKVRITDVKISTLYGELV 468
              V LN +     GDII+V++ +     L+G  V
Sbjct: 401 DGAVYLNGETKVKPGDIIRVKVENADEYDLWGTRV 435


>gi|283833872|ref|ZP_06353613.1| RNA modification enzyme, MiaB family [Citrobacter youngae ATCC
           29220]
 gi|291070543|gb|EFE08652.1| RNA modification enzyme, MiaB family [Citrobacter youngae ATCC
           29220]
          Length = 435

 Score =  387 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 133/455 (29%), Positives = 223/455 (49%), Gaps = 34/455 (7%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC  N+ DS R+     ++GY+ V S DDAD++++NTC   + A ++    +G
Sbjct: 3   KIGFISLGCPKNLVDSERILTELRTEGYDVVPSYDDADMVIVNTCGFIDSAVQESLEAIG 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                         +  V+V GC+  A+ ++I    P V  + GP +Y ++ E +     
Sbjct: 63  EA---------LNENGKVIVTGCLG-AKVDQIREVHPKVLEITGPHSYEQVLEHVHHY-- 110

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                       + F+ L + + G        A+L I EGC+  CTFC++P  RG  +SR
Sbjct: 111 ------VPKPKHNPFQSL-VPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGDLVSR 163

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNA------WRGKGLDGE--KCTFSDLLYSLSEI 257
            +  V+ EA++L+D GV EI ++ Q+ +A       R    +GE  K +  DL   LS++
Sbjct: 164 PIGDVLSEAKRLVDAGVKEILVISQDTSAYGVDVKHRTGFHNGEPVKTSMVDLCEQLSKL 223

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
               RL Y   +P       + A G    ++PYL +P+Q  S RILK M R  +      
Sbjct: 224 GIWTRLHYVYPYPHVDDVIPLMAEG---KILPYLDIPLQHASPRILKLMKRPGSVDRQLA 280

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
            I + R + P++ + S FIVGFPGET++DF+  +D + +    +   FKYSP  G   ++
Sbjct: 281 RIKQWREICPELTLRSTFIVGFPGETEEDFQMLLDFLKEARLDRVGCFKYSPVEGAGAND 340

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPWL 435
           + +Q+ E VK ER     +  ++         VG+ I V++++  +E   G+ +  +P +
Sbjct: 341 LPDQIPEEVKEERWNRFMQLQQQISAERLQEKVGREILVIVDEVDEEGAIGRSMADAPEI 400

Query: 436 QS-VVLNSKN-HNIGDIIKVRITDVKISTLYGELV 468
              V LN +     GDII+V++ +     L+G  V
Sbjct: 401 DGAVYLNGETQVKPGDIIRVKVENADEYDLWGTRV 435


>gi|255037356|ref|YP_003087977.1| MiaB-like tRNA modifying enzyme YliG [Dyadobacter fermentans DSM
           18053]
 gi|254950112|gb|ACT94812.1| MiaB-like tRNA modifying enzyme YliG [Dyadobacter fermentans DSM
           18053]
          Length = 436

 Score =  387 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 133/460 (28%), Positives = 225/460 (48%), Gaps = 33/460 (7%)

Query: 17  IVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNS--MDDADLIVLNTCHIRE 74
           +  + IV  +  + + GC  N+ DS  +       G+   +    DD+ ++V+NTC   +
Sbjct: 1   MKTKGIVKNKVNIVTLGCSKNLVDSEVLYTQLKGNGFAVDHESKKDDSQIVVINTCGFID 60

Query: 75  KAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYY 134
            A E+  + + R  + K +    G    V V GC++    +E+    P V+   G     
Sbjct: 61  NAKEESINTILRYADAKAA----GMVDKVYVTGCLSHRYKDELSVEIPTVDAWFGTNELP 116

Query: 135 RLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCV 194
           RL + L+           DY  E   ERL      Y       A+L I EGCD+ C+FC 
Sbjct: 117 RLLKTLK----------ADYKHELVGERLLTTPAHY-------AYLKIAEGCDRPCSFCA 159

Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL 254
           +P  RG  +SRS+  +V EA+ L   G  E+ L+ Q++  + G  +  +K   SDLL +L
Sbjct: 160 IPLMRGGHVSRSIEDLVKEAKSLAKRGTKELILIAQDLT-YYGLDIY-KKRNLSDLLRNL 217

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
           S+++G+  +R   ++P      ++    +   +  YL +P+QSGS  +LK M R  T  +
Sbjct: 218 SDVEGIEWIRLQYAYPAGFPMDVLDVMNERSNIAKYLDMPLQSGSTEMLKLMRRGITREK 277

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
              +I  IR   PDIA+ +  IVG PGET++ F  T + V+K+ + +  +F+YS    T 
Sbjct: 278 TEALIHSIRDKVPDIALRTTLIVGHPGETEELFDETYEFVEKMRFDRLGAFQYSHEDNTH 337

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSP- 433
             +M + V+  VK ER   + +  +      N A +G+  +VL ++  KE G  +GR+  
Sbjct: 338 SFSMEDDVEAEVKQERADAIMELQQGISAELNQAKIGKTFKVLFDR--KEGGYFIGRTEF 395

Query: 434 -----WLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  + +VL S+   +GD  +V++T  +   LYGE++
Sbjct: 396 DSPEVDNEVLVLASQYVRLGDYAQVKVTSAEEFDLYGEVI 435


>gi|284048363|ref|YP_003398702.1| MiaB-like tRNA modifying enzyme YliG [Acidaminococcus fermentans
           DSM 20731]
 gi|283952584|gb|ADB47387.1| MiaB-like tRNA modifying enzyme YliG [Acidaminococcus fermentans
           DSM 20731]
          Length = 442

 Score =  387 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 128/447 (28%), Positives = 214/447 (47%), Gaps = 18/447 (4%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V S GC  N+ DS  M  +   + +   N    AD+I++NTC   E A  +  + + ++ 
Sbjct: 5   VVSLGCPKNLVDSEVMMGLIRERQWTITNDPTHADVIIVNTCGFIESAKTESINTILQMA 64

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
             K    K+     ++V GC+ Q   +E+    P V+ ++G + Y ++  +++R   G+R
Sbjct: 65  EYK----KDDPHRKLIVTGCLGQRYADELFADLPEVDAIIGTECYDQIGTVIDRVEKGER 120

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
                +++    ++ +            TA+L I EGC+  C++C +P  RG   SR   
Sbjct: 121 -----FTLLKPPQKYTQKARRVLTTPQYTAYLKIAEGCNNRCSYCAIPKIRGPYRSRPYE 175

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
           +V+ EAR L+  GV E+ L+ Q+     G  L   K   +DLL  L+ I  L  +R    
Sbjct: 176 EVLQEARDLVSQGVRELILVAQDTT-QYGIDLY-HKLRLADLLRDLNTIPDLKWIRILYC 233

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
           +P   +D LI+     D +  Y+ LP+Q  S+ +L +M+RR T  +  +++ ++R   PD
Sbjct: 234 YPDSFTDELIETMAQCDKVCHYVDLPLQHASNSLLHTMHRRDTREQVEELLAKLRKRMPD 293

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           I + + FIVGFPGETD  F+  +D V K  +  A  F YS   GT    M  Q+ + VK 
Sbjct: 294 ICLRTTFIVGFPGETDGQFQELLDFVRKERFQCAGVFPYSQEDGTEAGAMPNQIPDEVKQ 353

Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-----GKLVGRSPWLQSVVL--N 441
           +R   L     E          G+++EVLIE   +E      G+    +P +   +    
Sbjct: 354 DRYHALMSLQAEISEEIQQEREGKVLEVLIEGKDEEDPNLALGRSYAEAPDIDGKIYVEE 413

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
           + +   GD +KVRI+        G++V
Sbjct: 414 AADLKAGDFVKVRISQGFTYEAVGQIV 440


>gi|157364247|ref|YP_001471014.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Thermotoga
           lettingae TMO]
 gi|229891012|sp|A8F716|MIAB_THELT RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|157314851|gb|ABV33950.1| RNA modification enzyme, MiaB family [Thermotoga lettingae TMO]
          Length = 436

 Score =  387 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 164/443 (37%), Positives = 257/443 (58%), Gaps = 15/443 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R F K+YGCQMN+ D+  M  +    GYE VN  ++AD+++LNTC +R+K+ EK +S LG
Sbjct: 2   RVFFKTYGCQMNLNDTETMAGILSQHGYEVVNLPEEADIVILNTCVVRQKSQEKYHSALG 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           +   LK    K G   L+ +AGC +  EGEE+++     + V+G ++  ++ E+L++A  
Sbjct: 62  QFVKLK----KSGKIKLIGIAGCGSNLEGEELIKS--GADFVIGSRSIGKIAEVLQKAAR 115

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G+++V   Y  +D     S       R     A++TI  GC++FCT+C+VPYTRG E SR
Sbjct: 116 GEKIV---YLEDDICTVDSKTPRM--RFSKHHAWITIIHGCNRFCTYCIVPYTRGREKSR 170

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            L  V+ E  KL  NGV EIT LGQNV+A  GK L  +    + L+    + + + R+ +
Sbjct: 171 PLPDVLLEVEKLAKNGVKEITFLGQNVDA-YGKDLK-DGTNLASLIEQAGKFEQIKRIWF 228

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
            TS+P D++D LI+   +        H+PVQSGS+RIL+ MNRR+   ++ Q++++IRS 
Sbjct: 229 LTSYPTDITDKLIETVAEDPKAAKSFHIPVQSGSNRILRLMNRRYDRDQFLQLVEKIRSK 288

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM-LEQVDE 384
            P  +ISSD IVGFP ET+ D+  TMDLV K  + +     YSPR GT  S    + V  
Sbjct: 289 IPHASISSDIIVGFPTETEYDYMQTMDLVRKARFERLNLAVYSPRQGTVASKYFKDDVPR 348

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
             K +RL  L +  ++     N   +G+++E+++E   KE G   GR    + ++ +S+ 
Sbjct: 349 EEKVQRLNKLLELQKQINRELNMQYLGKVVEIIVEGKTKE-GLYYGRDIRNKVIIFSSQE 407

Query: 445 HNIGDIIKVRITDVKISTLYGEL 467
            + G+ + ++I  +    LYG+L
Sbjct: 408 VSEGENVLLKIDKITAGPLYGKL 430


>gi|148656015|ref|YP_001276220.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Roseiflexus
           sp. RS-1]
 gi|229890636|sp|A5UUG7|MIAB_ROSS1 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|148568125|gb|ABQ90270.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Roseiflexus sp. RS-1]
          Length = 476

 Score =  387 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 158/459 (34%), Positives = 240/459 (52%), Gaps = 27/459 (5%)

Query: 14  VSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIR 73
            +Q  D     +R++V + GCQMNV DS R+E      GY      +DA  IVLN+C +R
Sbjct: 15  ATQSRDATPRERRYYVWTVGCQMNVSDSERLEAALQGVGYAPAERPEDASFIVLNSCSVR 74

Query: 74  EKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILR-RSPIVNVVVGPQT 132
             A E++   L  ++ LK        D  VV+ GC+     + I + R P+V+  V P  
Sbjct: 75  ASAEERILGKLSEVQRLKRKH----PDTKVVLWGCMVGPGNQSIFQSRLPMVDHFVSPSA 130

Query: 133 YYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTF 192
              +  L           +  Y +E+    L +    +     V+  + IQ GC+  C+F
Sbjct: 131 VDEVLAL---------APNPIYQLEE--PALPVARWDHP---PVSVHVPIQYGCNMSCSF 176

Query: 193 CVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLY 252
           CV+P  RG E SR L ++V+E R+++  G  EITLLGQ V++W G  L G +   +DLL 
Sbjct: 177 CVIPLRRGRERSRPLDEIVEECRRIVARGAKEITLLGQIVDSW-GHDLPG-RPDLADLLR 234

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
           ++ +I GL+RLR+ TSHP  M+D LI A  +L   MP ++LPVQ+G D +LK M R +T 
Sbjct: 235 AVHDIPGLLRLRFLTSHPAWMTDRLIAAVAELPRCMPDINLPVQAGDDALLKIMRRGYTV 294

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
             YR +I +IR   PD+++++D IVG PGET + F  T  L++ I + +     +S R G
Sbjct: 295 QRYRDLIAKIRDAIPDVSLTTDVIVGHPGETRERFEGTKRLLEDIRFDKVHIAAFSSRPG 354

Query: 373 TPGSNMLEQ----VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL 428
           T  ++M       V E  K  R + L++   +     N   + Q +EVL+E  G+ KGK 
Sbjct: 355 TRAADMELDPTLAVPEGEKQLRRIELERLQEQIAAERNARFLHQTVEVLVE--GEHKGKW 412

Query: 429 VGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
            GR+P  + V  +  +   G + +V IT     +L G L
Sbjct: 413 RGRTPGNKLVFFSDPDDWTGRLARVIITHTGPWSLQGVL 451


>gi|281416862|ref|ZP_06247882.1| RNA modification enzyme, MiaB family [Clostridium thermocellum
           JW20]
 gi|281408264|gb|EFB38522.1| RNA modification enzyme, MiaB family [Clostridium thermocellum
           JW20]
          Length = 434

 Score =  387 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 140/447 (31%), Positives = 238/447 (53%), Gaps = 18/447 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +R    + GC++N Y++  + +MF   GY+ V+  D+AD+ V+NTC +   +  K    +
Sbjct: 2   KRAAFYTLGCKVNQYETEAISEMFEKAGYKIVDFEDEADVYVINTCTVTNLSDRKSRQMI 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R +       +   + +V+V GC AQ   EE+  +   VN+VVG +   R+ E L+   
Sbjct: 62  RRAK-------RNNENSIVIVIGCYAQTAPEEV-SKIEGVNLVVGTKDRSRILEYLKELE 113

Query: 145 F--GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
              G+R    D     +FE L +       K    AF+ IQEGC++FCT+C++PY RG  
Sbjct: 114 TSGGRRNYVGDIMKTREFEELGVNVY----KERTRAFIKIQEGCNQFCTYCIIPYARGPV 169

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SRS   ++ E   L  +G  E+ L G +V ++   G D +  +  D++  + EI+G+ R
Sbjct: 170 RSRSEENILKEVSGLAHSGYKEVVLTGIHVASY---GKDIKNTSLIDIIRKVHEIEGIER 226

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R  +  P  +++  ++A   ++ L P  H+ +QSG D  LK MNR++T  EY + ++ +
Sbjct: 227 IRLGSIEPTTVTEEFVRAIKGMEKLCPQFHISLQSGCDSTLKRMNRKYTTKEYLKSVELL 286

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R    D+A+++D +VGFPGETD++F  T   V+K+ +A+   FKYS R GTP ++  +QV
Sbjct: 287 RENLKDVAVTTDVMVGFPGETDEEFNETCRFVEKVLFARMHVFKYSRRKGTPAASYPDQV 346

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVLN 441
               K ER   L +      + +N +  G+++ VL E+  K ++G + G +P    V   
Sbjct: 347 APQKKEERSRILIELASRMTLEYNKSFTGRVLPVLFEQEVKGKEGFMEGLTPNYIRVECK 406

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                 G I+ V + + K   + GE+V
Sbjct: 407 GDKDIEGQILNVLLREAKDDYIVGEIV 433


>gi|20807824|ref|NP_622995.1| 2-methylthioadenine synthetase [Thermoanaerobacter tengcongensis
           MB4]
 gi|81481565|sp|Q8RA52|RIMO_THETN RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|20516384|gb|AAM24599.1| 2-methylthioadenine synthetase [Thermoanaerobacter tengcongensis
           MB4]
          Length = 436

 Score =  387 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 126/448 (28%), Positives = 227/448 (50%), Gaps = 20/448 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +   + S GC  N  DS +M  +   +GY  VN    AD+I++NTC   E A ++   ++
Sbjct: 2   RNVGIISLGCPKNSVDSEKMLALLKEKGYNIVNDEKKADVIIINTCAFIEDAKKESIEYI 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            ++  LK  R+K      ++  GC+++   +E+++  P ++ V+G   + ++ +++E  +
Sbjct: 62  IQMGELKKKRLKY-----LIATGCLSERYNKELIKELPELDAVIGTGDFTQIVDVIEEVK 116

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            GK+V+   +      E +  +           A+L I EGC   C+FC++P  RG   S
Sbjct: 117 KGKKVLKYGHPDLLNDEGIPRI----LTTPPYYAYLKIAEGCSNACSFCIIPKLRGKYKS 172

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R +  +++EA++L   GV E+ ++ Q+     G  L  +K     LL  LS+I+ L  +R
Sbjct: 173 RKMENIIEEAQELARKGVKELIIIAQDTT-KYGIDLY-KKLMLPQLLRELSKIEELKWIR 230

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
              ++P  ++D LI+   +   ++ Y+ +P+Q  S+ +LK MNR  T  +  ++I ++RS
Sbjct: 231 LLYAYPDSVTDELIEEIKNNQKIVKYIDIPLQHSSESVLKRMNRGTTRRKIEEVISKLRS 290

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             P + + + F+VGFPGET+++F    + + +  + +   F YS   GT    M  Q+ +
Sbjct: 291 -IPGMVMRTTFMVGFPGETEEEFEDLKNFIKEKRFERVGVFTYSREEGTKSYYMKPQIRK 349

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVL 440
            VK +R   L +  ++    FN + +G  +EVLIE    E G   GRS    P +  +V 
Sbjct: 350 KVKLKRQEELMEIQKQISYEFNMSKIGTKLEVLIEGF--EDGVYYGRSYMDAPEIDGLVY 407

Query: 441 --NSKNHNIGDIIKVRITDVKISTLYGE 466
             + K    GD + V + D     L GE
Sbjct: 408 VRSDKKLFPGDFVTVTVVDAFEYDLVGE 435


>gi|327440950|dbj|BAK17315.1| 2-methylthioadenine synthetase [Solibacillus silvestris StLB046]
          Length = 449

 Score =  387 bits (994), Expect = e-105,   Method: Composition-based stats.
 Identities = 133/450 (29%), Positives = 238/450 (52%), Gaps = 21/450 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +   + + GC++N Y++  +  +F  QGYER      AD+ V+NTC +     +K    +
Sbjct: 7   KTVSLHTLGCKVNHYETEAIWQLFKEQGYERTEFDHQADVYVINTCTVTNTGDKKSRQVI 66

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R        I++  D ++ V GC AQ    EI+   P V++VVG Q   ++   +++ R
Sbjct: 67  RRA-------IRQNPDAVICVTGCYAQTSPAEIMA-IPGVDIVVGTQDREKMLGYIDQYR 118

Query: 145 FGKRVVDTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
             ++ ++   ++     +E L +            A L IQEGC+ FCTFC++P+ RG+ 
Sbjct: 119 NERQPINAVRNIMKNRVYEELDVP----AFTDRTRASLKIQEGCNNFCTFCIIPWARGLM 174

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKGLV 261
            SR   +V+ +A++L+D G  EI L G +     G G D +    + LL  L +++KGL 
Sbjct: 175 RSRDPEEVIRQAQQLVDAGYLEIVLTGIHTG---GYGQDFKDYNLAQLLRDLEAQVKGLK 231

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           RLR ++     ++D +I    + ++++ +LH+P+QSGSD +LK M R++T   + + +++
Sbjct: 232 RLRISSIEASQLTDEVIDVLQNSEIVVNHLHIPIQSGSDTVLKRMRRKYTMEFFAERLEK 291

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           ++   PD+A++SD IVGFPGET+++F  T + +    +++   F YS R GTP + M +Q
Sbjct: 292 LKIALPDLAVTSDVIVGFPGETEEEFMETFNFIRDHKFSELHVFPYSQRTGTPAARMEDQ 351

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKH---GKEKGKLVGRSPWLQSV 438
           VDE +K ER+  L     +    +     G+++EV+ E+       +   VG +     V
Sbjct: 352 VDEEIKNERVHRLIALNDQLAKEYASRFEGEVLEVIPEERFKDSDNENLYVGYTTNYLKV 411

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           +       +G ++KV++T        G+ V
Sbjct: 412 IFEGAEEMVGQLVKVKVTKAGYPYNEGQFV 441


>gi|302871917|ref|YP_003840553.1| RNA modification enzyme, MiaB family [Caldicellulosiruptor
           obsidiansis OB47]
 gi|302574776|gb|ADL42567.1| RNA modification enzyme, MiaB family [Caldicellulosiruptor
           obsidiansis OB47]
          Length = 433

 Score =  387 bits (994), Expect = e-105,   Method: Composition-based stats.
 Identities = 144/446 (32%), Positives = 244/446 (54%), Gaps = 17/446 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R    + GC++N Y++  + ++F   G+E V+    AD+ V+NTC +   +  K    + 
Sbjct: 2   RIAFYTLGCKVNQYETQAVAELFKESGFEIVDFDSKADVYVINTCTVTNMSDRKSRQAIK 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           + + L         + +VVV GC  Q    E+  +   +++++G +   ++ + ++    
Sbjct: 62  KAKKL-------SPESIVVVMGCYPQVYPHEV-EKIRDIDIIIGTKDRQKIVDYVKEYLD 113

Query: 146 GKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            K+  V   +    + FE L I +     +    AF+ I+EGCD+FC++C++PY RG   
Sbjct: 114 NKKKIVAIDEGYKRESFEELKISEFNERSR----AFIKIEEGCDQFCSYCIIPYARGAVR 169

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SRSL  + +E R+L+ NG  E  + G N++A  GK LDG K T  D++  ++EI+G+ R+
Sbjct: 170 SRSLESIEEEVRRLVSNGYKEFVITGINISA-YGKDLDG-KITLIDVIERINEIEGVKRI 227

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R ++  P  MS+  I      D L  +LHL +QSGSD+ILK MNR +T  +Y+ I++RI+
Sbjct: 228 RLSSLEPLIMSEQFISRLLSFDKLCHHLHLSLQSGSDKILKLMNRHYTTAQYQGIVERIK 287

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
               D+A ++D IVGFPGET++DF  T+  V +IG+++   F++SP+ GT   +M  Q+D
Sbjct: 288 EKWDDVAFTTDIIVGFPGETEEDFNDTVKFVQEIGFSRIHVFRFSPKKGTKAYDMPNQID 347

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWL-QSVVLNS 442
              K  R   +++        F+   VG+ +EVLIE+     G   G S    +++V  S
Sbjct: 348 SKEKERRSKVMKEVAANLSYQFHRKFVGKWLEVLIEQDSDFDGYYEGYSGNYIRTLVRKS 407

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
                G+I KV+IT      + GE++
Sbjct: 408 HMIVPGEIYKVKITQAYEQYVKGEII 433


>gi|146297144|ref|YP_001180915.1| MiaB-like tRNA modifying enzyme YliG [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|238065313|sp|A4XLD9|RIMO_CALS8 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|145410720|gb|ABP67724.1| SSU ribosomal protein S12P methylthiotransferase
           [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 440

 Score =  387 bits (994), Expect = e-105,   Method: Composition-based stats.
 Identities = 123/449 (27%), Positives = 222/449 (49%), Gaps = 17/449 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC  N+ DS  M       G+E   + +DAD+IV+NTC     A ++    + 
Sbjct: 3   KVGFVSLGCNKNLVDSEIMMGACKEAGFEITPNAEDADVIVINTCGFINDAKQESIDTIL 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +   KN + K      ++V GC++Q   ++IL+  P V+ ++G +   +LP ++++   
Sbjct: 63  EMAEYKNKKCK-----FLIVTGCLSQRYKDDILKELPEVDAILGVKEMLKLPNVIKKLYE 117

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G+  +   +  +  F   S +           A++ I EGC+  C++C +P  RG   SR
Sbjct: 118 GESKLQV-FDDKPTFVYTSSMPR-LIATPKFYAYIKIAEGCNNRCSYCSIPLIRGNYTSR 175

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            +  ++ EARKL ++G  EI L  Q+     G  +  +K   + LL  LSEI  +  +R+
Sbjct: 176 YIDDIIQEARKLSEDGYKEIVLTAQDTT-KYGIDIY-QKKMLATLLQKLSEIDNIKWIRF 233

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
             S+P D+ D L+     L  ++ Y  +P+Q  ++RILK MNR+ ++   +++I RIRS 
Sbjct: 234 LYSYPEDIDDELLNIVKSLPKVVKYFDIPIQHINNRILKLMNRKTSSEGIKELIQRIRSA 293

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
             ++ I +  +VGFP E++D+F    + V    + +  +F YS   GTP +++  Q D+ 
Sbjct: 294 FDEVVIRTTVMVGFPTESEDEFEELYEFVKWAKFDRLGAFMYSQEEGTPAADLP-QTDDE 352

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQS--VV 439
            K +R   +    R+  +  N   + +  EV+IE   +     + RS    P +    +V
Sbjct: 353 TKVKRYERILNLQRKISLERNRKRISKKYEVVIEGRDR-NNFYIARSQFEAPEVDGKIIV 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
            + +    G+ + V+I D     L GE++
Sbjct: 412 FSKRKLLPGEFVVVKILDAFEYDLVGEVI 440


>gi|297260004|ref|XP_001103977.2| PREDICTED: CDK5 regulatory subunit-associated protein 1-like
           [Macaca mulatta]
          Length = 483

 Score =  387 bits (994), Expect = e-105,   Method: Composition-based stats.
 Identities = 151/479 (31%), Positives = 244/479 (50%), Gaps = 51/479 (10%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ ++++YGCQMNV D+     +    GY R +++ +AD+I+L TC IREKA + +++ L
Sbjct: 9   RKVYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCSIREKAEQTIWNRL 68

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            +++ LK  R +    L + + GC+A+   EEIL R  +V+V+ GP  Y  LP LL  A 
Sbjct: 69  HQLKALKTRRPRSRVPLRIGILGCMAERLKEEILNREKMVDVLAGPDAYRDLPRLLAVAE 128

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G++  +   S+++ +  +  V          +AF++I  GCD  C++C+VP+TRG E S
Sbjct: 129 SGQQAANVLLSLDETYADVMPVQTN---PSATSAFVSIMRGCDNMCSYCIVPFTRGRERS 185

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG---------------------LDGE 243
           R ++ +++E +KL + G+ E+TLLGQNVN++R                            
Sbjct: 186 RPVASILEEVKKLSEQGLKEVTLLGQNVNSFRDNSEVQFNNAVSTNLSRGFTTNYKAKQG 245

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
              F+ LL  +S +   +R+R+T+ HP+D  D +++   + D +   +HLP QSGS R+L
Sbjct: 246 GLRFAHLLDQVSRVDPEMRIRFTSPHPKDFPDEVLQLIHERDNICKQIHLPAQSGSSRVL 305

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           ++M R             +RS+   +++SSDFI GF GET++D   T+ L+ ++ Y   F
Sbjct: 306 EAMRRG-----------VMRSL--GVSLSSDFIAGFCGETEEDHVQTVSLLREVQYNMGF 352

Query: 364 SFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422
            F YS R  T     + + V E VK  RL  L    RE+    N   VG    VL+E   
Sbjct: 353 LFAYSMRQKTRAYHRLKDDVPEEVKLRRLEELITVFREEATKANQISVGCTQLVLVEGLS 412

Query: 423 KEK-GKLVGRSPWLQSVVLNSKN------------HNIGDIIKVRITDVKISTLYGELV 468
           K     L GR+     V+                    GD + V+IT     TL G ++
Sbjct: 413 KRSVTDLCGRNDGNLKVIFPDAEMEDVNNPGLRVRAQPGDYVLVKITSASSQTLRGHVL 471


>gi|332981525|ref|YP_004462966.1| 30S ribosomal protein S12P methylthiotransferase [Mahella
           australiensis 50-1 BON]
 gi|332699203|gb|AEE96144.1| SSU ribosomal protein S12P methylthiotransferase [Mahella
           australiensis 50-1 BON]
          Length = 440

 Score =  387 bits (994), Expect = e-105,   Method: Composition-based stats.
 Identities = 136/455 (29%), Positives = 229/455 (50%), Gaps = 24/455 (5%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           +P    + S GC  N+ DS  M      +GY   N   +AD+I++NTC   E A ++  +
Sbjct: 1   MPYNIGMISLGCPKNLVDSETMLAELADKGYVITNDPKEADVIIINTCSFIESAKQESIN 60

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +  +   K      G    ++  GC++Q   E++L   P +N V+G   Y+ +  ++++
Sbjct: 61  TILEMARYKE----IGRCKGLIAVGCLSQQYKEQLLDEIPELNAVIGTGDYHSIGLVVDK 116

Query: 143 ARFGKRVV---DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
              G +V      D SVE   +R+              A++ I EGCD  C++C++P+ R
Sbjct: 117 ILNGGKVAYFEGGDVSVEGIEKRILSTP-------PYMAYVKIAEGCDNGCSYCIIPFLR 169

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G   SR +  +++E ++L+D GV EI L+ Q+  +  G+ + G K   ++LL+ L  I  
Sbjct: 170 GPYRSRPMENIIEECKELVDRGVKEIILIAQDT-SVYGRDIYG-KPRLAELLHELDNINN 227

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           +  +R    +P  ++D LI+A      +  Y+ +P+Q  +D+IL  M RR  + + + +I
Sbjct: 228 IEWIRVLYCYPDYVNDELIEAIVQSRHVCHYIDIPIQHINDKILAKMGRRSRSNDIKGVI 287

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
           +R+R   P IAI +  IVGFPGETD DF+   D V++        F YS   GT  + M 
Sbjct: 288 ERLRKCIPGIAIRTSLIVGFPGETDRDFQMLRDFVEQYRLDNVGVFTYSQEEGTIAAAMP 347

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWL 435
           EQV E+VK ER   + +  R+  +  N   +G   +VL+E      G  VGR    +P +
Sbjct: 348 EQVAEDVKQERYKSIMRVQRKIVLEKNKERIGFSYKVLVEGCN--NGVYVGRGYMYAPEI 405

Query: 436 QSVVL--NSKNHNIGDIIKVRITDVKISTLYGELV 468
             ++   + K  + G ++ V+I  VK   L GE +
Sbjct: 406 DGLIYFTSDKPLDAGQMVYVKIKGVKDYDLTGEAI 440


>gi|196230124|ref|ZP_03128987.1| MiaB-like tRNA modifying enzyme YliG [Chthoniobacter flavus
           Ellin428]
 gi|196225721|gb|EDY20228.1| MiaB-like tRNA modifying enzyme YliG [Chthoniobacter flavus
           Ellin428]
          Length = 480

 Score =  386 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 132/483 (27%), Positives = 228/483 (47%), Gaps = 35/483 (7%)

Query: 17  IVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA 76
           +  +   P++  + S GC  N+ D+  M     S+G +  ++ D+AD++++NTC   + A
Sbjct: 1   MSTKTATPKKVGMISLGCAKNLVDAEIMLGGVLSKGMQITSNADEADVLIVNTCAFIDSA 60

Query: 77  AEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL 136
            E+    +      +  + + G  L  +V+GC+AQ   +E+    P V+  +G       
Sbjct: 61  KEESIEAILEAHESRGLKKRAGQRL--IVSGCMAQRFAKELTHEMPEVDAFIGLDQVADA 118

Query: 137 PELLERARF-------GKRVVDTDYSVEDKFERLS--------IVDGGYNRKR---GVTA 178
             ++E+            +    D  +++++E L+        I D    R R     TA
Sbjct: 119 AGIIEQVFSRPAAPVPAAKAKAPDVLLDEQWEPLNLVTRKPVYIPDYDTPRFRLTPAHTA 178

Query: 179 FLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK 238
           F  I EGC+  C+FCV+P  RG   SR++  VV E R L+  GV EI L+ Q+   + G 
Sbjct: 179 FTKIAEGCNHPCSFCVIPQMRGKHRSRTIESVVAEVRSLVAEGVKEINLISQDTTYF-GM 237

Query: 239 GLDGEK------------CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV 286
            L  EK             T   LL  L +I+G   +R   +HP   SD LI    +   
Sbjct: 238 DLWEEKAGPRQQVDSSRGPTLIKLLRELDKIEGDFWIRLLYTHPAHWSDELIACIAECKK 297

Query: 287 LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDD 346
           +  Y+ +P+Q    R+L+ M R  ++     +I RIR+  P IAI + FIVGFPGETD++
Sbjct: 298 VCRYIDMPLQHIHPRMLELMRRETSSEHIENLIARIRAGIPGIAIRTTFIVGFPGETDEE 357

Query: 347 FRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFN 406
           F   +D +++  + +   F YS   G+  + M +QV + VKA R     K  ++     +
Sbjct: 358 FNYLLDFIERTRFERLGVFTYSQEEGSRAAKMDDQVPQKVKAARYKRAMKLQQKIAREIS 417

Query: 407 DACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGE 466
           +  VGQ +  ++++      +    +P +   +L S    +G+ I V IT  ++  L G+
Sbjct: 418 ETQVGQRVRAVVDQPLV--ARAAADAPDIDGRILLSSPAPVGEFIDVEITGTQVYDLVGD 475

Query: 467 LVV 469
            ++
Sbjct: 476 PIL 478


>gi|119897316|ref|YP_932529.1| ribosomal protein S12 methylthiotransferase [Azoarcus sp. BH72]
 gi|238065290|sp|A1K487|RIMO_AZOSB RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|119669729|emb|CAL93642.1| hypothetical protein azo1025 [Azoarcus sp. BH72]
          Length = 443

 Score =  386 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 134/456 (29%), Positives = 209/456 (45%), Gaps = 35/456 (7%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R    S GC     DS  +     ++GYE   S D ADL+V+NTC   + A E+    +G
Sbjct: 11  RVGFVSLGCPKATSDSEHILTRLRAEGYEISGSYDAADLVVVNTCGFIDAAVEESLDAIG 70

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                         +  V+V GC+  A+ + IL   P V  V GP     + + + R   
Sbjct: 71  EALA---------ENGRVIVTGCLG-AKDDVILAAHPQVLAVTGPHATEEVMQAVHRHLP 120

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                       D F  L +   G        A+L I EGC+  CTFC++P  RG  +SR
Sbjct: 121 ---------KPHDPFSDL-VPPQGIRLTPQHYAYLKISEGCNHRCTFCIIPSMRGDLVSR 170

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAW-----RGKGLDGEKC---TFSDLLYSLSEI 257
            +  V+ EA  L D GV E+ ++ Q+ +A+        G  G K       DL  +L E+
Sbjct: 171 PIHDVMREAEALADAGVKELLVISQDTSAYGVDVKYRTGFWGGKPVKTRLYDLANALGEL 230

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
              +R+ Y   +P       + A G    ++PYL +P Q  S RILK+M R   A    +
Sbjct: 231 GIWIRMHYVYPYPSVDDLIPLMAEG---KILPYLDVPFQHASPRILKAMKRPANAENVLE 287

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
            + + R + PD+ I S FI GFPGET++DF   +  ++     +  +F YSP  G   ++
Sbjct: 288 RVRKWREICPDLTIRSTFITGFPGETEEDFEQLLQFLEAAQLDRVGAFAYSPVEGAAAND 347

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPWL 435
           + + V + V+ ER   L     +      +A +G+ + VL++   +E    +  G +P +
Sbjct: 348 LPDAVPDEVREERRARLMDFQEDISTQRLEAKIGREMTVLVDDVDEEGALARSPGDAPEI 407

Query: 436 QSVVL--NSKNHNIGDIIKVRITDVKISTLYGELVV 469
             +V+  + +    GD ++VRITD  I  LY E VV
Sbjct: 408 DGLVVIPDGEGLAPGDFVRVRITDCDIHDLYAERVV 443


>gi|309362075|emb|CAP28750.2| hypothetical protein CBG_09036 [Caenorhabditis briggsae AF16]
          Length = 1062

 Score =  386 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 154/471 (32%), Positives = 236/471 (50%), Gaps = 35/471 (7%)

Query: 25   QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
            +     +YGCQMNV D   +  +    G+      + AD+++L TC IR+ A +KV++ L
Sbjct: 595  RTVCYVTYGCQMNVSDMEIVRSIMTQYGFVESEKKEKADVVLLMTCSIRDGAEKKVWNHL 654

Query: 85   GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
              IR+            +V V GC+A+    ++L +  +VN+V GP +Y  LP L+  A 
Sbjct: 655  KLIRS-----NSVNKSQIVGVLGCMAERVRHDLLAKRNLVNIVAGPDSYRDLPRLVAIAA 709

Query: 145  FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
             G   ++   S+++ +  +  +      K   TAF++I  GCD  CT+CVVP+TRG E S
Sbjct: 710  GGSNAINVQLSLDETYADVQPIRVDAATK---TAFISIMRGCDNMCTYCVVPFTRGRERS 766

Query: 205  RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG----------KGLDGEKC--------- 245
            R +  +V+E R+L D+G  +ITLLGQNVN++R             + G K          
Sbjct: 767  RPIESIVEEVRRLRDDGYKQITLLGQNVNSYRDLTISPSTSSEDRVPGFKTVYKPKTGGL 826

Query: 246  TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
            TF+ LL  +++    VR R+T+ HP+D    LI+       L   LHLP QSG D  L+ 
Sbjct: 827  TFTSLLEQVADAAPEVRFRFTSPHPKDFPMQLIELIASRPNLCKQLHLPAQSGDDDTLER 886

Query: 306  MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
            M R +T   Y +++D IR + P++ ++SDFI GF GET+   + T+ L+ ++GY+  F F
Sbjct: 887  MGRGYTRDLYLRLVDDIRKILPNVFLTSDFIAGFCGETEQAHQMTLSLIRQVGYSFCFVF 946

Query: 366  KYSPRLGTPG-SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-- 422
             YS R  T     + + V E VKA+R L L    RE+ +  N   +G    VL E     
Sbjct: 947  PYSMRGKTRAHHRLADDVPEEVKAQRHLDLTTVFREEALKLNQTLIGTEQIVLREGVSQN 1006

Query: 423  ---KEKGKLVGRSPWLQSVVLNSKNH--NIGDIIKVRITDVKISTLYGELV 468
               ++     GR       V  +       G   KV IT+    TL  +L+
Sbjct: 1007 TSRRDATFSYGRIDGGVKTVFPNPEDIVKPGQYAKVLITEANSQTLRAQLI 1057


>gi|255066997|ref|ZP_05318852.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Neisseria sicca ATCC
           29256]
 gi|255048822|gb|EET44286.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Neisseria sicca ATCC
           29256]
          Length = 496

 Score =  386 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 166/395 (42%), Positives = 240/395 (60%), Gaps = 8/395 (2%)

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135
           A +     + R+R    ++ K   DL++ VAGCVA  EGE I++R+P V+VV GPQT +R
Sbjct: 106 ARKSAGKSVLRLRPRTPAQRK-NPDLIIGVAGCVASQEGENIIKRAPYVDVVFGPQTLHR 164

Query: 136 LPELL-ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCV 194
           LP+++ ++   G   VD  +   +KF+ L        R  G  AF++I EGC K+C+FCV
Sbjct: 165 LPKMIVDKETSGLSQVDISFPEIEKFDHLPPA-----RVEGGAAFVSIMEGCSKYCSFCV 219

Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL 254
           VPYTRG E SR L+ V+ E   L   GV EI LLGQNVNA+RG+  DGE C F+ LL  +
Sbjct: 220 VPYTRGEEFSRPLNDVLTEIANLAQQGVKEINLLGQNVNAYRGEMEDGEICDFATLLRIV 279

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
            EI G+ R+R+TTSHPR+ +D +I+ + DL  L+ +LHLP+QSGSDR+L +M R +TA E
Sbjct: 280 HEIPGIERMRFTTSHPREFTDSIIECYRDLPKLVSHLHLPIQSGSDRVLSAMKRGYTALE 339

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
           Y+ II ++R++RPD+ +SSDFIVGFPGET+ +F  T+ LV  I +  +F F YSPR GTP
Sbjct: 340 YKSIIRKLRAIRPDLCLSSDFIVGFPGETEREFEQTLKLVKDIAFDLSFVFIYSPRPGTP 399

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSP 433
            +N+ +      K  RL  L + +  +    N   +G +   L+E    K+  +L  R+ 
Sbjct: 400 AANLPDDTPHAEKVRRLEALNEVIEAETARINQTMIGTVQRCLVEGISKKDPDQLQARTA 459

Query: 434 WLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
             + V        I  +I + IT+    +L G+ V
Sbjct: 460 NNRVVNFTGTPDMINQMIDLEITEAYTFSLRGKPV 494


>gi|229825044|ref|ZP_04451113.1| hypothetical protein GCWU000182_00394 [Abiotrophia defectiva ATCC
           49176]
 gi|229790791|gb|EEP26905.1| hypothetical protein GCWU000182_00394 [Abiotrophia defectiva ATCC
           49176]
          Length = 464

 Score =  386 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 134/470 (28%), Positives = 224/470 (47%), Gaps = 30/470 (6%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + ++ ++ S GC  N+ DS  M      +GYE  + + +AD  V+N+C     A E+  +
Sbjct: 1   MTEKIYLVSLGCDKNLVDSEIMLGFLKREGYEITDELYEADYAVVNSCCFIGDAKEESIN 60

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +  I  LK    KEG    ++V GC+AQ     I    P  + V+G   Y  +   ++ 
Sbjct: 61  TIIEIGELK----KEGKLKGLIVTGCLAQRYQSLITEELPEADAVIGTTAYDNIVAAIDE 116

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            +  ++  +    +ED        +        +++++ I EGC+K CT+C++PY RG  
Sbjct: 117 IKTKQKKDNKSLYIEDLDRLAGGEEVRLVPAGEISSYIKIAEGCNKRCTYCIIPYIRGNF 176

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            S  +  ++ EA  L   G  E+ L+ Q      G  + G+K    DL++ LS+I G+  
Sbjct: 177 RSIPMETIIKEAESLAAQGTKELLLVAQETT-LYGTDIYGKKA-LPDLVHELSKISGIEW 234

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R    +P +++D +I A  +   +  Y+ LP+Q  SD ILK M RR    E R+ I ++
Sbjct: 235 IRLLYCYPEEITDEIIYAIKNEKKVCHYIDLPIQHSSDSILKRMARRTNQAELRERIAKL 294

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R   PDI + +  I GFPGET+DDF+   + VD++ + +   F YS   GTP + M  Q+
Sbjct: 295 REEIPDITLRTTLITGFPGETEDDFKELYNFVDEMEFDRLGVFTYSAEEGTPAAEMENQI 354

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK----------------HGKEKG 426
           DE VK  R   + +  +E      +  +G++ EVL+E                    E G
Sbjct: 355 DEEVKVARRNEIMELQQEISAEKAEGRIGKVYEVLVEGTVPSDSVNGEAFASIREVNEDG 414

Query: 427 K--LVGRS----PWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468
           K   +GR+    P +   V    ++ I  G++ +V I       L+G LV
Sbjct: 415 KKVYIGRTYMDAPDVDGQVFFESDYEIMSGELAEVEIIASDEYDLFGVLV 464


>gi|255323483|ref|ZP_05364614.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Campylobacter showae
           RM3277]
 gi|255299520|gb|EET78806.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Campylobacter showae
           RM3277]
          Length = 436

 Score =  386 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 158/451 (35%), Positives = 244/451 (54%), Gaps = 20/451 (4%)

Query: 21  CIVPQRFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEK 79
               ++ F+++ GC MNV DS  +       + YE    + +ADLI++NTC +REK   K
Sbjct: 2   SAAQKKLFIQTLGCAMNVRDSEHIIAELKQKEDYELTQDISEADLILINTCSVREKPVHK 61

Query: 80  VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL 139
           ++S +G    +K +  K      + V GC A   G EI +R+P V+ ++G +   ++   
Sbjct: 62  LFSEVGGFEKVKKAGAK------IGVCGCTASHLGSEIFKRAPYVDFILGARNVSKISAA 115

Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           ++  +F    ++ D S     E          R     +++ I  GCDK CT+C+VP+TR
Sbjct: 116 VKTPKFISTDINHDESEYAFGEF---------RGSPYKSYINISIGCDKKCTYCIVPHTR 166

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG--EKCTFSDLLYSLSEI 257
           G EIS   + ++ E +K  + G  EI LLGQNVN   GK   G  EK  FSDLL  +SEI
Sbjct: 167 GDEISIPANLILREVKKAAEGGAKEIFLLGQNVN-NYGKRFSGTHEKIDFSDLLVKISEI 225

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
           +G+ R+R+T+ HP  M D  ++       +   +H+P+QSGS ++L+ M R +T   +  
Sbjct: 226 EGVERIRFTSPHPLHMDDKFLEIFSQNPKICKSMHMPLQSGSTKVLREMKRGYTKEWFLD 285

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
              R+R++ P+++IS+D IV FP ETD++F  TMD+++K+ + Q FSFKYSPR  T  + 
Sbjct: 286 RAGRLRAMCPEVSISTDIIVAFPSETDEEFEDTMDVLEKVRFEQIFSFKYSPRPMTKAAE 345

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQS 437
              Q+ E V + RL  LQ +  E       A  G+I +V  E+  +  G + GRS     
Sbjct: 346 FTNQIPEAVASARLTRLQSRHNEILDEIVAAQKGKIFDVYFEEL-RANGGVAGRSFNNFL 404

Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           V +      +G  +KVR+ D K   LYGELV
Sbjct: 405 VQVAGSEELLGKTLKVRVNDPKRMVLYGELV 435


>gi|224582664|ref|YP_002636462.1| ribosomal protein S12 methylthiotransferase [Salmonella enterica
           subsp. enterica serovar Paratyphi C strain RKS4594]
 gi|224467191|gb|ACN45021.1| hypothetical protein SPC_0849 [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
          Length = 441

 Score =  386 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 132/455 (29%), Positives = 220/455 (48%), Gaps = 34/455 (7%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC  N+ DS R+     ++GY+ V   DDAD++++NTC   + A ++    +G
Sbjct: 9   KIGFVSLGCPKNLVDSERILTELRTEGYDVVPRYDDADMVIVNTCGFIDSAVQESLEAIG 68

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                         +  VVV GC+  A+ ++I    P V  + GP +Y ++ + +     
Sbjct: 69  EA---------LNENGKVVVTGCLG-AKEDQIREVHPKVLEITGPHSYEQVLQHVHHY-- 116

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                       + F  L + + G        A+L I EGC+  CTFC++P  RG  +SR
Sbjct: 117 ------VPKPKHNPFLSL-VPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGDLVSR 169

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNA------WRGKGLDGE--KCTFSDLLYSLSEI 257
            +  V+ EA++L+D GV EI ++ Q+ +A       R    +GE  K +   L   LS++
Sbjct: 170 PIGDVLSEAKRLVDAGVKEILVISQDTSAYGVDVKHRTGFHNGEPVKTSMVSLCEQLSKL 229

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
               RL Y   +P       + A G    ++PYL +P+Q  S RILK M R  +      
Sbjct: 230 GVWTRLHYVYPYPHVDDVIPLMAEG---KILPYLDIPLQHASPRILKLMKRPGSVDRQLA 286

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
            I + R + P++ + S FIVGFPGET++DF+  +D + +    +   FKYSP  G   + 
Sbjct: 287 RIKQWREICPELTLRSTFIVGFPGETEEDFQMLLDFLKEARLDRVGCFKYSPVEGAGANE 346

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPWL 435
           + +QV E VK ER     +  ++         VG+ I V++++  +E   G+ +  +P +
Sbjct: 347 LPDQVPEEVKEERWNRFMQLQQQISAERLQEKVGREILVIVDEVDEEGAIGRSMADAPEI 406

Query: 436 QS-VVLNSK-NHNIGDIIKVRITDVKISTLYGELV 468
              V LN + N   GDI++V++ +     L+G  V
Sbjct: 407 DGAVYLNGETNVKPGDIVRVKVENADEYDLWGSRV 441


>gi|167550447|ref|ZP_02344204.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|204929807|ref|ZP_03220828.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|204320801|gb|EDZ06002.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|205324564|gb|EDZ12403.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|322616326|gb|EFY13235.1| ribosomal protein S12 methylthiotransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315996572]
 gi|322619576|gb|EFY16451.1| ribosomal protein S12 methylthiotransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-1]
 gi|322622728|gb|EFY19573.1| ribosomal protein S12 methylthiotransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-3]
 gi|322628640|gb|EFY25427.1| ribosomal protein S12 methylthiotransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-4]
 gi|322631577|gb|EFY28333.1| ribosomal protein S12 methylthiotransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-1]
 gi|322637104|gb|EFY33807.1| ribosomal protein S12 methylthiotransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-2]
 gi|322641696|gb|EFY38332.1| hypothetical protein SEEM954_16890 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322644510|gb|EFY41050.1| ribosomal protein S12 methylthiotransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322648443|gb|EFY44895.1| ribosomal protein S12 methylthiotransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. OH_2009072675]
 gi|322654178|gb|EFY50501.1| ribosomal protein S12 methylthiotransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322658093|gb|EFY54360.1| ribosomal protein S12 methylthiotransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 19N]
 gi|322663567|gb|EFY59769.1| ribosomal protein S12 methylthiotransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 81038-01]
 gi|322670303|gb|EFY66443.1| ribosomal protein S12 methylthiotransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. MD_MDA09249507]
 gi|322671539|gb|EFY67661.1| ribosomal protein S12 methylthiotransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 414877]
 gi|322676895|gb|EFY72962.1| ribosomal protein S12 methylthiotransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 366867]
 gi|322682820|gb|EFY78839.1| ribosomal protein S12 methylthiotransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 413180]
 gi|322686499|gb|EFY82481.1| ribosomal protein S12 methylthiotransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 446600]
 gi|323194604|gb|EFZ79797.1| ribosomal protein S12 methylthiotransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609458-1]
 gi|323196806|gb|EFZ81950.1| ribosomal protein S12 methylthiotransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556150-1]
 gi|323204818|gb|EFZ89813.1| ribosomal protein S12 methylthiotransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609460]
 gi|323208954|gb|EFZ93891.1| ribosomal protein S12 methylthiotransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 507440-20]
 gi|323213939|gb|EFZ98709.1| ribosomal protein S12 methylthiotransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556152]
 gi|323215209|gb|EFZ99954.1| ribosomal protein S12 methylthiotransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB101509-0077]
 gi|323222435|gb|EGA06811.1| ribosomal protein S12 methylthiotransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB102109-0047]
 gi|323227535|gb|EGA11695.1| ribosomal protein S12 methylthiotransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB110209-0055]
 gi|323229887|gb|EGA14010.1| ribosomal protein S12 methylthiotransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB111609-0052]
 gi|323233112|gb|EGA17208.1| ribosomal protein S12 methylthiotransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009083312]
 gi|323240847|gb|EGA24889.1| ribosomal protein S12 methylthiotransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009085258]
 gi|323243164|gb|EGA27184.1| ribosomal protein S12 methylthiotransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315731156]
 gi|323248705|gb|EGA32633.1| ribosomal protein S12 methylthiotransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2009159199]
 gi|323251707|gb|EGA35574.1| ribosomal protein S12 methylthiotransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008282]
 gi|323257521|gb|EGA41209.1| ribosomal protein S12 methylthiotransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008283]
 gi|323261478|gb|EGA45059.1| ribosomal protein S12 methylthiotransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008284]
 gi|323267909|gb|EGA51388.1| ribosomal protein S12 methylthiotransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008285]
 gi|323272024|gb|EGA55439.1| ribosomal protein S12 methylthiotransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008287]
          Length = 441

 Score =  386 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 131/455 (28%), Positives = 221/455 (48%), Gaps = 34/455 (7%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC  N+ DS R+     ++GY+ V   DDAD++++NTC   + A ++    +G
Sbjct: 9   KIGFVSLGCPKNLVDSERILTELRTEGYDVVPRYDDADMVIVNTCGFIDSAVQESLEAIG 68

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                         +  V+V GC+  A+ ++I    P V  + GP +Y ++ + +     
Sbjct: 69  EA---------LNENGKVIVTGCLG-AKEDQIREVHPKVLEITGPHSYEQVLQHVHHY-- 116

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                       + F  L + + G        A+L I EGC+  CTFC++P  RG  +SR
Sbjct: 117 ------VPKPKHNPFLSL-VPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGDLVSR 169

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNA------WRGKGLDGE--KCTFSDLLYSLSEI 257
            +  V+ EA++L+D GV EI ++ Q+ +A       R    +GE  K +   L   LS++
Sbjct: 170 PIGDVLSEAKRLVDAGVKEILVISQDTSAYGVDVKHRTGFHNGEPVKTSMVSLCEQLSKL 229

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
               RL Y   +P       + A G    ++PYL +P+Q  S RILK M R  +      
Sbjct: 230 GVWTRLHYVYPYPHVDDVIPLMAEG---KILPYLDIPLQHASPRILKLMKRPGSVDRQLA 286

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
            I + R + P++ + S FIVGFPGET++DF+  +D + +    +   FKYSP  G   ++
Sbjct: 287 RIKQWREICPELTLRSTFIVGFPGETEEDFQMLLDFLKEARLDRVGCFKYSPVEGAGAND 346

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPWL 435
           + +QV E VK ER     +  ++         VG+ I V++++  +E   G+ +  +P +
Sbjct: 347 LPDQVPEEVKEERWNRFMQLQQQISAERLQEKVGREILVIVDEVDEEGAIGRSMADAPEI 406

Query: 436 QS-VVLNSK-NHNIGDIIKVRITDVKISTLYGELV 468
              V LN + N   GDI++V++ +     L+G  V
Sbjct: 407 DGAVYLNGETNVKPGDIVRVKVENADEYDLWGSRV 441


>gi|324112729|gb|EGC06705.1| MiaB tRNA modifying enzyme YliG [Escherichia fergusonii B253]
          Length = 441

 Score =  386 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 133/455 (29%), Positives = 219/455 (48%), Gaps = 34/455 (7%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC  N+ DS R+     ++GY+ V S DDAD++++NTC   + A ++    +G
Sbjct: 9   KIGFVSLGCPKNLVDSERILTELRTEGYDVVPSYDDADMVIVNTCGFIDSAVQESLEAIG 68

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                         +  V+V GC+  A+ ++I    P V  + GP +Y ++ E +     
Sbjct: 69  EA---------LNENGKVIVTGCLG-AKEDQIREVHPKVLEITGPHSYEQVLEHVHHY-- 116

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                       + F  L + + G        A+L I EGC+  CTFC++P  RG  +SR
Sbjct: 117 ------VPKPKHNPFLSL-VPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGDLVSR 169

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNA------WRGKGLDGE--KCTFSDLLYSLSEI 257
            +  V+ EA++L+D GV EI ++ Q+ +A       R    +GE  K +   L   LS++
Sbjct: 170 PIGDVLSEAKRLVDAGVKEILVISQDTSAYGVDVKHRTGFYNGEPVKTSMVSLCEQLSKL 229

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
               RL Y   +P       + A G    ++PYL +P+Q  S RILK M R  +      
Sbjct: 230 GIWTRLHYVYPYPHVDDVIPLMAEG---KILPYLDIPLQHASPRILKLMKRPGSVDRQLA 286

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
            I + R + P++ + S FIVGFPGET++DF+  +D + +    +   FK+SP  G   + 
Sbjct: 287 RIKQWREICPELTLRSTFIVGFPGETEEDFQMLLDFLKEARLDRVGCFKFSPVEGADANA 346

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPWL 435
           + +QV E VK ER     +  ++         VG+ I V+I++   E   G+ +  +P +
Sbjct: 347 LPDQVPEEVKEERWNRFMQLQQQISAERLQEKVGKEILVIIDEVDDEGAIGRSMADAPEI 406

Query: 436 QS-VVLNSK-NHNIGDIIKVRITDVKISTLYGELV 468
              V LN + N   GDI++V++       L+G  V
Sbjct: 407 DGAVYLNGESNVKPGDIVRVKVEHADEYDLWGSRV 441


>gi|302872168|ref|YP_003840804.1| MiaB-like tRNA modifying enzyme YliG [Caldicellulosiruptor
           obsidiansis OB47]
 gi|302575027|gb|ADL42818.1| MiaB-like tRNA modifying enzyme YliG [Caldicellulosiruptor
           obsidiansis OB47]
          Length = 441

 Score =  386 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 125/450 (27%), Positives = 216/450 (48%), Gaps = 17/450 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC  N+ DS  M       G+E  ++ +DAD+IV+NTC     A ++    + 
Sbjct: 3   KIGFVSLGCNKNLVDSEIMMGACVEAGFEITSNAEDADVIVVNTCGFINDAKQESIDTIL 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +   KN + K      ++V GC+ Q   +EIL + P ++ ++G +   +LP++++    
Sbjct: 63  DMAEYKNKKCK-----FLIVTGCLTQRYKDEILEQMPEIDAILGVKEMLKLPDVIKDLYE 117

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           GK+ +             S+            A++ I EGC+  C++C +P  RG   SR
Sbjct: 118 GKQRIKVFNDASSFVYSSSMPRVIA--TPSYYAYIKIAEGCNNRCSYCSIPLIRGKYTSR 175

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            +  +V EA++L + G  EI L  Q+     G  + G+K     LL  L +I+ +  +R+
Sbjct: 176 PIEDIVREAKELAERGYKEIILTAQDTT-KYGTDIYGKKM-LPALLEELEKIEKIKWIRF 233

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
             S+P D+ +  +        ++ Y  +PVQ  +DRILK MNR+ T    R++I++IR  
Sbjct: 234 LYSYPEDLDENFVNVVKFSSKVVNYFDIPVQHVNDRILKLMNRKSTKESIRRLIEKIRES 293

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
             ++ I +  +VGFP ETD++F      +    + +  +F YS   GT  S +  QVDE+
Sbjct: 294 FDEVVIRTTILVGFPTETDEEFEELCSFLKWAEFDRLGAFMYSQEEGTLASQLP-QVDED 352

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQS--VV 439
           +K  R   +    R+     N   +G+  EV+IE   +     +GRS    P +    +V
Sbjct: 353 IKQRRYEKVLNIQRKISKKQNRKRIGKEYEVVIEAKDR-NNFYIGRSQFEAPEVDGKVLV 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELVV 469
            +      G  +KV+I D     L GE+++
Sbjct: 412 FSKNRLTAGQFVKVKILDAFEYDLVGEIIL 441


>gi|253688060|ref|YP_003017250.1| MiaB-like tRNA modifying enzyme YliG [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|251754638|gb|ACT12714.1| MiaB-like tRNA modifying enzyme YliG [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 442

 Score =  386 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 132/464 (28%), Positives = 220/464 (47%), Gaps = 34/464 (7%)

Query: 17  IVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA 76
           + +      R    S GC  N+ DS R+     ++GY+ V   DDA+L+++NTC   + A
Sbjct: 1   MSNIAPPQPRIGFVSLGCPKNLVDSERILTELRTEGYQVVPRYDDAELVIVNTCGFIDSA 60

Query: 77  AEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL 136
            ++    +G              +  V+V GC+  A+  +I    P V  + GP +Y ++
Sbjct: 61  VQESLEAIGEA---------LNENGKVIVTGCLG-AKENQIREVHPKVLEITGPHSYEQV 110

Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
              + +               + F  L + + G        A+L I EGCD  CTFC++P
Sbjct: 111 LSHVHQY--------VPKPTHNPFTSL-VPEQGVKLTPRHYAYLKISEGCDHRCTFCIIP 161

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFS 248
             RG   SR +  V+DEA++L+D GV E+ ++ Q+ +A+      R    +G+  K +  
Sbjct: 162 SMRGDLDSRPIGSVLDEAKRLVDAGVKELLVISQDTSAYGADVKQRTGFWNGQPVKTSMV 221

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
            L   L+ +   VRL Y   +P       + A G    ++PYL +P+Q  S +ILK M R
Sbjct: 222 SLCEQLASLGVWVRLHYVYPYPHVDDVIPLMAEG---KILPYLDIPLQHASPKILKLMKR 278

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
                   + I R R + PD+ + S FIVGFPGET++DF+  +D + +    +   FK+S
Sbjct: 279 PGAVERTLERIKRWREICPDLTLRSTFIVGFPGETEEDFQMLLDFLKEAKLDRVGCFKFS 338

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--G 426
           P  G   + + +QV E VK ER     +  +          +G+ + VLI++  +E   G
Sbjct: 339 PVEGAAANALPDQVPEEVKEERFHRFMQLQQAISAQRLQDKIGREVLVLIDEIDEEGAIG 398

Query: 427 KLVGRSPWLQS-VVLNSK-NHNIGDIIKVRITDVKISTLYGELV 468
           + +  +P +   V LN +    +GDI+KV++       L+G  V
Sbjct: 399 RSMADAPEIDGAVYLNGETGVKVGDIVKVKVEHADEYDLWGSRV 442


>gi|308497096|ref|XP_003110735.1| hypothetical protein CRE_04500 [Caenorhabditis remanei]
 gi|308242615|gb|EFO86567.1| hypothetical protein CRE_04500 [Caenorhabditis remanei]
          Length = 561

 Score =  386 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 155/481 (32%), Positives = 242/481 (50%), Gaps = 40/481 (8%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +     +YGCQMNV D   +  +    G+   +  + AD+++L TC IR+ A +KV++ L
Sbjct: 79  KTVCYVTYGCQMNVSDMEIVRSIMSQYGFVESDQKEKADIVLLMTCSIRDGAEKKVWNQL 138

Query: 85  GRIRNLKNSRIKEGGDLLV----------VVAGCVAQAEGEEILRRSPIVNVVVGPQTYY 134
             IR+   ++ +  G L +           + GC+A+    ++L +  +VN+V GP +Y 
Sbjct: 139 KLIRSNSVNKRQIVGVLGLFSVLMNAKISYLTGCMAERVRHDLLEKRNLVNIVAGPDSYR 198

Query: 135 RLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCV 194
            LP L+  A  G   ++   S+++ +  +  +      +   TAF++I  GCD  CT+CV
Sbjct: 199 DLPRLVAVASGGSNAINVQLSLDETYAEVQPIRVDAESR---TAFISIMRGCDNMCTYCV 255

Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG--------------KGL 240
           VP+TRG E SR +  +V+E R+L D G  +ITLLGQNVN++R                 +
Sbjct: 256 VPFTRGRERSRPIDSIVEEVRRLRDQGYKQITLLGQNVNSYRDMTSMDFPMNPSTTEDRV 315

Query: 241 DGEKC---------TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL 291
            G K          TF+ LL  +++    VR R+T+ HP+D    LI+       L   L
Sbjct: 316 PGFKTVYKPKSGGLTFTSLLEKVADAAPDVRFRFTSPHPKDFPMQLIELIASRTNLCKQL 375

Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351
           HLP QSG D  L  M R ++   Y +++D IR + P+++++SDFI GF GET++  + T+
Sbjct: 376 HLPAQSGDDETLDRMGRGYSRDLYLRLVDDIRIILPNVSLTSDFIAGFCGETEEAHQNTL 435

Query: 352 DLVDKIGYAQAFSFKYSPRLGTPG-SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACV 410
            L+ ++GY+  F F YS R  T     + + V ENVKA R L L    RE+ +  N   +
Sbjct: 436 SLIREVGYSFCFVFPYSMRGKTRAHHRLTDDVPENVKARRHLDLTTVFREEAMKLNQKLI 495

Query: 411 GQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN--SKNHNIGDIIKVRITDVKISTLYGEL 467
           G    VL+E   K       GR+      V +      N G   KV IT+    TL  E 
Sbjct: 496 GTEQTVLLEGKSKRDVAFSHGRTDGGVKAVFDNSKSQLNPGQYAKVLITEANSQTLKAEF 555

Query: 468 V 468
           +
Sbjct: 556 I 556


>gi|16759769|ref|NP_455386.1| ribosomal protein S12 methylthiotransferase [Salmonella enterica
           subsp. enterica serovar Typhi str. CT18]
 gi|29142458|ref|NP_805800.1| ribosomal protein S12 methylthiotransferase [Salmonella enterica
           subsp. enterica serovar Typhi str. Ty2]
 gi|213051906|ref|ZP_03344784.1| hypothetical protein Salmoneentericaenterica_02590 [Salmonella
           enterica subsp. enterica serovar Typhi str. E00-7866]
 gi|213428067|ref|ZP_03360817.1| hypothetical protein SentesTyphi_22295 [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213853079|ref|ZP_03382611.1| hypothetical protein SentesT_09591 [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
 gi|289827178|ref|ZP_06545920.1| hypothetical protein Salmonellentericaenterica_16188 [Salmonella
           enterica subsp. enterica serovar Typhi str. E98-3139]
 gi|81515236|sp|Q8Z861|RIMO_SALTI RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|25305455|pir||AH0603 conserved hypothetical protein yliG [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16502062|emb|CAD05298.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29138088|gb|AAO69649.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
          Length = 441

 Score =  386 bits (992), Expect = e-105,   Method: Composition-based stats.
 Identities = 131/455 (28%), Positives = 220/455 (48%), Gaps = 34/455 (7%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC  N+ DS R+     ++GY+ V   DDAD++++NTC   + A ++    +G
Sbjct: 9   KIGFVSLGCPKNLVDSERILTELRTEGYDVVPHYDDADMVIVNTCGFIDSAVQESLEAIG 68

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                         +  V+V GC+  A+ ++I    P V  + GP +Y ++ + +     
Sbjct: 69  EA---------LNENGKVIVTGCLG-AKEDQIREVHPKVLEITGPHSYEQVLQHVHHY-- 116

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                       + F  L + + G        A+L I EGC+  CTFC++P  RG  +SR
Sbjct: 117 ------VPKPKHNPFLSL-VPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGDLVSR 169

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNA------WRGKGLDGE--KCTFSDLLYSLSEI 257
            +  V+ EA++L+D GV EI ++ Q+ +A       R    +GE  K +   L   LS++
Sbjct: 170 PIGDVLSEAKRLVDAGVKEILVISQDTSAYGVDVKHRTGFHNGEPMKTSMVSLCEQLSKL 229

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
               RL Y   +P       + A G    ++PYL +P+Q  S RILK M R  +      
Sbjct: 230 GVWTRLHYVYPYPHVDDVIPLMAEG---KILPYLDIPLQHASPRILKLMKRPGSVDRQLA 286

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
            I + R + P++ + S FIVGFPGET++DF+  +D + +    +   FKYSP  G   + 
Sbjct: 287 RIKQWREICPELTLRSTFIVGFPGETEEDFQMLLDFLKEARLDRVGCFKYSPVEGAGANE 346

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPWL 435
           + +QV E VK ER     +  ++         VG+ I V++++  +E   G+ +  +P +
Sbjct: 347 LPDQVPEEVKEERWNRFMQLQQQISAERLQEKVGREILVIVDEVDEEGAIGRSMADAPEI 406

Query: 436 QS-VVLNSK-NHNIGDIIKVRITDVKISTLYGELV 468
              V LN + N   GDI++V++ +     L+G  V
Sbjct: 407 DGAVYLNGETNVKPGDIVRVKVENADEYDLWGSRV 441


>gi|15642615|ref|NP_232248.1| hypothetical protein VC2620 [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121588096|ref|ZP_01677844.1| conserved hypothetical protein [Vibrio cholerae 2740-80]
 gi|153819032|ref|ZP_01971699.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457]
 gi|153821555|ref|ZP_01974222.1| conserved hypothetical protein [Vibrio cholerae B33]
 gi|229507328|ref|ZP_04396833.1| ribosomal protein S12p Asp88 methylthiotransferase [Vibrio cholerae
           BX 330286]
 gi|229509748|ref|ZP_04399229.1| ribosomal protein S12p Asp88 methylthiotransferase [Vibrio cholerae
           B33]
 gi|229516873|ref|ZP_04406319.1| ribosomal protein S12p Asp88 methylthiotransferase [Vibrio cholerae
           RC9]
 gi|229606834|ref|YP_002877482.1| ribosomal protein S12 methylthiotransferase [Vibrio cholerae
           MJ-1236]
 gi|254851159|ref|ZP_05240509.1| conserved hypothetical protein [Vibrio cholerae MO10]
 gi|255744413|ref|ZP_05418365.1| MiaB-like tRNA modifying enzyme YliG [Vibrio cholera CIRS 101]
 gi|262158474|ref|ZP_06029589.1| MiaB-like tRNA modifying enzyme YliG [Vibrio cholerae INDRE 91/1]
 gi|81544361|sp|Q9KNW0|RIMO_VIBCH RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|9657209|gb|AAF95761.1| conserved hypothetical protein [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121547639|gb|EAX57736.1| conserved hypothetical protein [Vibrio cholerae 2740-80]
 gi|126510413|gb|EAZ73007.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457]
 gi|126520940|gb|EAZ78163.1| conserved hypothetical protein [Vibrio cholerae B33]
 gi|229345936|gb|EEO10908.1| ribosomal protein S12p Asp88 methylthiotransferase [Vibrio cholerae
           RC9]
 gi|229353222|gb|EEO18161.1| ribosomal protein S12p Asp88 methylthiotransferase [Vibrio cholerae
           B33]
 gi|229354833|gb|EEO19754.1| ribosomal protein S12p Asp88 methylthiotransferase [Vibrio cholerae
           BX 330286]
 gi|229369489|gb|ACQ59912.1| ribosomal protein S12p Asp88 methylthiotransferase [Vibrio cholerae
           MJ-1236]
 gi|254846864|gb|EET25278.1| conserved hypothetical protein [Vibrio cholerae MO10]
 gi|255737938|gb|EET93331.1| MiaB-like tRNA modifying enzyme YliG [Vibrio cholera CIRS 101]
 gi|262029635|gb|EEY48284.1| MiaB-like tRNA modifying enzyme YliG [Vibrio cholerae INDRE 91/1]
          Length = 470

 Score =  386 bits (992), Expect = e-105,   Method: Composition-based stats.
 Identities = 130/469 (27%), Positives = 218/469 (46%), Gaps = 36/469 (7%)

Query: 13  MVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHI 72
           +  Q  +      +    S GC  N+ DS R+     ++GYE VNS  D+D++++NTC  
Sbjct: 21  IAEQSQNSQTTGNKIGFVSLGCPKNLVDSERILTQLRTEGYEIVNSYHDSDVVIVNTCGF 80

Query: 73  REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT 132
            + A ++    +G    LK +         V+V GC+   E +EI +  P V  + GP  
Sbjct: 81  IDSAVQESLDTIGEA--LKENGK-------VIVTGCLGARE-DEIRQVHPNVLGITGPHA 130

Query: 133 YYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTF 192
           Y  + E + +               + F  L + D G        A+L I EGC+  CTF
Sbjct: 131 YQNVLEHVHQY--------APKPAHNPFTSL-VPDHGVKLTPKHYAYLKISEGCNHRCTF 181

Query: 193 CVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE--------- 243
           C++P  RG  +SR + +++ EA +L + GV E+ ++ Q+ +A  G               
Sbjct: 182 CIIPSMRGDLVSRPVGEIIGEAERLKNAGVKELLVISQDTSA-YGVDTKHSLGFANGSPV 240

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
           +     L   L ++   VRL Y   +P       + A G    ++PYL +P Q  S R+L
Sbjct: 241 RHNIKALSEELGKMGIWVRLHYVYPYPHVDEIIPLMAEG---KVLPYLDIPFQHASPRVL 297

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           K M R   A    + I + R + P++ I S FIVGFPGET++DF+  +D + +    +  
Sbjct: 298 KMMKRPGQAERTLERIKKWREICPELVIRSTFIVGFPGETEEDFQILLDWLKEAQLDRVG 357

Query: 364 SFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK 423
            FKYSP  G   + + +Q+ E+VK +R        +E   +     +G  ++VLI++  +
Sbjct: 358 CFKYSPVEGAAANEIEDQIPEDVKQDRFERFMLVQQEISAAKLQKRIGSTMQVLIDEVDE 417

Query: 424 EK--GKLVGRSPWLQS-VVLNSK-NHNIGDIIKVRITDVKISTLYGELV 468
           E   G+    +P +   V LN + N   G+++ V I       L+G ++
Sbjct: 418 EGAIGRTYADAPEIDGLVYLNGETNLKPGELVNVVIEHADEYDLWGSIL 466


>gi|161503979|ref|YP_001571091.1| ribosomal protein S12 methylthiotransferase [Salmonella enterica
           subsp. arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|238066586|sp|A9MIP6|RIMO_SALAR RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|160865326|gb|ABX21949.1| hypothetical protein SARI_02072 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 441

 Score =  386 bits (992), Expect = e-105,   Method: Composition-based stats.
 Identities = 131/455 (28%), Positives = 221/455 (48%), Gaps = 34/455 (7%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC  N+ DS R+     ++GY+ V   DDAD++++NTC   + A ++    +G
Sbjct: 9   KIGFVSLGCPKNLVDSERILTELRTEGYDVVPRYDDADMVIVNTCGFIDSAVQESLEAIG 68

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                         +  V+V GC+  A+ ++I    P V  + GP +Y ++ + +     
Sbjct: 69  EA---------LNENGKVIVTGCLG-AKEDQIREVHPKVLEITGPHSYEQVLQHVHHY-- 116

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                       + F  L + + G        A+L I EGC+  CTFC++P  RG  +SR
Sbjct: 117 ------VPKPKHNPFLSL-VPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGDLVSR 169

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNA------WRGKGLDGE--KCTFSDLLYSLSEI 257
            +  V+ EA++L+D GV EI ++ Q+ +A       R    +GE  K + + L   LS++
Sbjct: 170 PIGDVLSEAKRLVDAGVKEILVISQDTSAYGVDVKHRTGFHNGEPVKTSMASLCEQLSKL 229

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
               RL Y   +P       + A G    ++PYL +P+Q  S RILK M R  +      
Sbjct: 230 GVWTRLHYVYPYPHVDDVIPLMAEG---KILPYLDIPLQHASPRILKLMKRPGSVDRQLA 286

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
            I + R + P++ + S FIVGFPGET++DF+  +D + +    +   FKYSP  G   + 
Sbjct: 287 RIKQWRDICPELTLRSTFIVGFPGETEEDFQMLLDFLKEARLDRVGCFKYSPVEGAGANE 346

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPWL 435
           + +QV E VK ER     +  ++         VG+ I V++++  +E   G+ +  +P +
Sbjct: 347 LPDQVPEEVKEERWNRFMQLQQQISAERLQEKVGREILVIVDEVDEEGAIGRSMADAPEI 406

Query: 436 QS-VVLNSK-NHNIGDIIKVRITDVKISTLYGELV 468
              V LN + N   GDI++V++ +     L+G  V
Sbjct: 407 DGAVYLNGETNVKPGDIVRVKVENADEYDLWGSRV 441


>gi|158334864|ref|YP_001516036.1| hypothetical protein AM1_1701 [Acaryochloris marina MBIC11017]
 gi|238065264|sp|B0CB83|RIMO_ACAM1 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|158305105|gb|ABW26722.1| conserved hypothetical protein [Acaryochloris marina MBIC11017]
          Length = 443

 Score =  386 bits (992), Expect = e-105,   Method: Composition-based stats.
 Identities = 135/450 (30%), Positives = 223/450 (49%), Gaps = 23/450 (5%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
             V   GC+ N  D+  M  +    GY   +    AD +++NTC   + A E+    L  
Sbjct: 7   VAVAHLGCEKNRVDTEHMLGLLVEAGYPVDSDEAFADYVIVNTCSFIQAAREESVRTLVE 66

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           +               +V+ GC+AQ   EE+L   P    +VG   Y+++ ++++RA  G
Sbjct: 67  LAEANKK---------IVITGCMAQHFQEELLEELPEAVALVGTGDYHKIVDVIQRAEAG 117

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           +RV +   S E  +     V        G TA++ I EGCD  C FC++P+ RG + SRS
Sbjct: 118 ERVKEV--SPEPTYIADETVPRYRTTTEG-TAYVRIAEGCDYGCAFCIIPHLRGKQRSRS 174

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
           +  +V EA++L   GV E+ L+ Q +    G  L G K   ++LL +L E+  +  +R  
Sbjct: 175 IESIVAEAQQLAAEGVQELILISQ-ITTNYGIDLYG-KPQLAELLRALGEVD-VPWIRMH 231

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
            ++P  ++  ++ A  + D ++PYL LP+Q     +L++MNR        QII++I++  
Sbjct: 232 YAYPTGLTPEVMAAIQETDNVLPYLDLPLQHSHPEVLRAMNRPWQGQVNDQIIEKIKTAL 291

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           PD  + + FIVGFPGETD+ F    + V +  +     F +SP  GTP  ++  Q+ ++V
Sbjct: 292 PDAVLRTTFIVGFPGETDEHFEHLCEFVQRHEFDHVGVFTFSPEEGTPAFDLPNQLPQDV 351

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSP----WLQSVVL-- 440
              R   L    +      N   VG+ ++VLIE+     G+L+GRSP     +  +V   
Sbjct: 352 MDARRDRLMALQQPISWQQNQQEVGKTVQVLIEQEHPGSGQLIGRSPRFSADVDGLVYID 411

Query: 441 --NSKNHNIGDIIKVRITDVKISTLYGELV 468
              + +  +G +  V+ITD     L G+LV
Sbjct: 412 PGEAPSPRLGSLTPVQITDADAYDLQGQLV 441


>gi|16764214|ref|NP_459829.1| ribosomal protein S12 methylthiotransferase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|62179417|ref|YP_215834.1| ribosomal protein S12 methylthiotransferase [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|167992097|ref|ZP_02573195.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|168230763|ref|ZP_02655821.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|168236790|ref|ZP_02661848.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|168263635|ref|ZP_02685608.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|168466463|ref|ZP_02700325.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|168819992|ref|ZP_02831992.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|194445570|ref|YP_002040091.1| ribosomal protein S12 methylthiotransferase [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
 gi|194472522|ref|ZP_03078506.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|194734067|ref|YP_002113944.1| ribosomal protein S12 methylthiotransferase [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|197249990|ref|YP_002145812.1| ribosomal protein S12 methylthiotransferase [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
 gi|197362974|ref|YP_002142611.1| ribosomal protein S12 methylthiotransferase [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. AKU_12601]
 gi|198242582|ref|YP_002214817.1| ribosomal protein S12 methylthiotransferase [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|200390615|ref|ZP_03217226.1| MiaB-like tRNA modifying enzyme YliG [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|207856287|ref|YP_002242938.1| ribosomal protein S12 methylthiotransferase [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
 gi|75484309|sp|Q57RA8|RIMO_SALCH RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|81523437|sp|Q8ZQM1|RIMO_SALTY RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|238066584|sp|B5F0X7|RIMO_SALA4 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|238066587|sp|B5FPB9|RIMO_SALDC RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|238066588|sp|B5QXV6|RIMO_SALEP RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|238066591|sp|B4T0B2|RIMO_SALNS RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|238066593|sp|B5BBX8|RIMO_SALPK RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|238066626|sp|B4TQZ6|RIMO_SALSV RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|16419359|gb|AAL19788.1| putative Fe-S oxidoreductases family 1 [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|62127050|gb|AAX64753.1| putative Fe-S oxidoreductases family 1 [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|194404233|gb|ACF64455.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194458886|gb|EDX47725.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|194709569|gb|ACF88790.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|195630937|gb|EDX49523.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|197094451|emb|CAR59967.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|197213693|gb|ACH51090.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197290104|gb|EDY29461.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|197937098|gb|ACH74431.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|199603060|gb|EDZ01606.1| MiaB-like tRNA modifying enzyme YliG [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|205329653|gb|EDZ16417.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|205334686|gb|EDZ21450.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|205343222|gb|EDZ29986.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|205347796|gb|EDZ34427.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|206708090|emb|CAR32381.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|261246108|emb|CBG23911.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|301157436|emb|CBW16925.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|312911876|dbj|BAJ35850.1| hypothetical protein STMDT12_C09070 [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|320085126|emb|CBY94913.1| Ribosomal protein S12 methylthiotransferase rimO S12
           methylthiotransferase; S12 MTTase; Ribosome maturation
           factor rimO [Salmonella enterica subsp. enterica serovar
           Weltevreden str. 2007-60-3289-1]
 gi|321226432|gb|EFX51483.1| ribosomal protein S12 methylthiotransferase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. TN061786]
 gi|322713887|gb|EFZ05458.1| RNA modification enzyme [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
 gi|323129158|gb|ADX16588.1| hypothetical protein STM474_0877 [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|326622569|gb|EGE28914.1| putative FeS oxidoreductase [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
 gi|332987783|gb|AEF06766.1| ribosomal protein S12 methylthiotransferase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. UK-1]
          Length = 441

 Score =  386 bits (992), Expect = e-105,   Method: Composition-based stats.
 Identities = 131/455 (28%), Positives = 220/455 (48%), Gaps = 34/455 (7%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC  N+ DS R+     ++GY+ V   DDAD++++NTC   + A ++    +G
Sbjct: 9   KIGFVSLGCPKNLVDSERILTELRTEGYDVVPRYDDADMVIVNTCGFIDSAVQESLEAIG 68

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                         +  V+V GC+  A+ ++I    P V  + GP +Y ++ + +     
Sbjct: 69  EA---------LNENGKVIVTGCLG-AKEDQIREVHPKVLEITGPHSYEQVLQHVHHY-- 116

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                       + F  L + + G        A+L I EGC+  CTFC++P  RG  +SR
Sbjct: 117 ------VPKPKHNPFLSL-VPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGDLVSR 169

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNA------WRGKGLDGE--KCTFSDLLYSLSEI 257
            +  V+ EA++L+D GV EI ++ Q+ +A       R    +GE  K +   L   LS++
Sbjct: 170 PIGDVLSEAKRLVDAGVKEILVISQDTSAYGVDVKHRTGFHNGEPVKTSMVSLCEQLSKL 229

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
               RL Y   +P       + A G    ++PYL +P+Q  S RILK M R  +      
Sbjct: 230 GVWTRLHYVYPYPHVDDVIPLMAEG---KILPYLDIPLQHASPRILKLMKRPGSVDRQLA 286

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
            I + R + P++ + S FIVGFPGET++DF+  +D + +    +   FKYSP  G   + 
Sbjct: 287 RIKQWREICPELTLRSTFIVGFPGETEEDFQMLLDFLKEARLDRVGCFKYSPVEGAGANE 346

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPWL 435
           + +QV E VK ER     +  ++         VG+ I V++++  +E   G+ +  +P +
Sbjct: 347 LPDQVPEEVKEERWNRFMQLQQQISAERLQEKVGREILVIVDEVDEEGAIGRSMADAPEI 406

Query: 436 QS-VVLNSK-NHNIGDIIKVRITDVKISTLYGELV 468
              V LN + N   GDI++V++ +     L+G  V
Sbjct: 407 DGAVYLNGETNVKPGDIVRVKVENADEYDLWGSRV 441


>gi|183179613|ref|ZP_02957824.1| conserved hypothetical protein [Vibrio cholerae MZO-3]
 gi|229524596|ref|ZP_04414001.1| ribosomal protein S12p Asp88 methylthiotransferase [Vibrio cholerae
           bv. albensis VL426]
 gi|254285814|ref|ZP_04960776.1| conserved hypothetical protein [Vibrio cholerae AM-19226]
 gi|297581460|ref|ZP_06943383.1| conserved hypothetical protein [Vibrio cholerae RC385]
 gi|150423996|gb|EDN15935.1| conserved hypothetical protein [Vibrio cholerae AM-19226]
 gi|183013024|gb|EDT88324.1| conserved hypothetical protein [Vibrio cholerae MZO-3]
 gi|229338177|gb|EEO03194.1| ribosomal protein S12p Asp88 methylthiotransferase [Vibrio cholerae
           bv. albensis VL426]
 gi|297534298|gb|EFH73136.1| conserved hypothetical protein [Vibrio cholerae RC385]
          Length = 470

 Score =  386 bits (992), Expect = e-105,   Method: Composition-based stats.
 Identities = 130/469 (27%), Positives = 218/469 (46%), Gaps = 36/469 (7%)

Query: 13  MVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHI 72
           +  Q  +      +    S GC  N+ DS R+     ++GYE VNS  D+D++++NTC  
Sbjct: 21  IAEQSQNSQTTGNKIGFVSLGCPKNLVDSERILTQLRTEGYEIVNSYHDSDVVIVNTCGF 80

Query: 73  REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT 132
            + A ++    +G    LK +         V+V GC+   E +EI +  P V  + GP  
Sbjct: 81  IDSAVQESLDTIGEA--LKENGK-------VIVTGCLGARE-DEIRQVHPNVLGITGPHA 130

Query: 133 YYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTF 192
           Y  + E + +               + F  L + D G        A+L I EGC+  CTF
Sbjct: 131 YQNVLEHVHQY--------APKPAHNPFTSL-VPDHGVKLTPKHYAYLKISEGCNHRCTF 181

Query: 193 CVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE--------- 243
           C++P  RG  +SR + +++ EA +L + GV E+ ++ Q+ +A  G               
Sbjct: 182 CIIPSMRGDLVSRPVGEIIGEAERLKNAGVKELLVISQDTSA-YGVDTKHSLGFANGSPV 240

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
           +     L   L ++   VRL Y   +P       + A G    ++PYL +P Q  S R+L
Sbjct: 241 RHNIKALSEELGKMGIWVRLHYVYPYPHVDEIIPLMAEG---KVLPYLDIPFQHASPRVL 297

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           K M R   A    + I + R + P++ I S FIVGFPGET++DF+  +D + +    +  
Sbjct: 298 KMMKRPGQAERTLERIKKWREICPELVIRSTFIVGFPGETEEDFQILLDWLKEAQLDRVG 357

Query: 364 SFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK 423
            FKYSP  G   + + +Q+ E+VK +R        +E   +     +G  ++VLI++  +
Sbjct: 358 CFKYSPVEGAAANEIEDQIPEDVKQDRFERFMLVQQEISAAKLQKRIGSTMQVLIDEVDE 417

Query: 424 EK--GKLVGRSPWLQS-VVLNSK-NHNIGDIIKVRITDVKISTLYGELV 468
           E   G+    +P +   V LN + N   G+++ V I       L+G ++
Sbjct: 418 EGAIGRTYADAPEIDGLVYLNGETNLKPGELVNVVIEHADEYDLWGSVL 466


>gi|153830055|ref|ZP_01982722.1| conserved hypothetical protein [Vibrio cholerae 623-39]
 gi|254226795|ref|ZP_04920368.1| conserved hypothetical protein [Vibrio cholerae V51]
 gi|262190834|ref|ZP_06049056.1| MiaB-like tRNA modifying enzyme YliG [Vibrio cholerae CT 5369-93]
 gi|125620688|gb|EAZ49049.1| conserved hypothetical protein [Vibrio cholerae V51]
 gi|148874454|gb|EDL72589.1| conserved hypothetical protein [Vibrio cholerae 623-39]
 gi|262033283|gb|EEY51799.1| MiaB-like tRNA modifying enzyme YliG [Vibrio cholerae CT 5369-93]
          Length = 470

 Score =  386 bits (992), Expect = e-105,   Method: Composition-based stats.
 Identities = 131/469 (27%), Positives = 218/469 (46%), Gaps = 36/469 (7%)

Query: 13  MVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHI 72
           +  Q  +      +    S GC  N+ DS R+     ++GYE VNS  D+D++++NTC  
Sbjct: 21  IAEQSQNSQTTGNKIGFVSLGCPKNLVDSERILTQLRTEGYEIVNSYHDSDVVIVNTCGF 80

Query: 73  REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT 132
            + A ++    +G    LK +         V+V GC+   E +EI +  P V  + GP  
Sbjct: 81  IDSAVQESLDTIGEA--LKENGK-------VIVTGCLGARE-DEIRQVHPNVLGITGPHA 130

Query: 133 YYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTF 192
           Y  + E + +               + F  L + D G        A+L I EGC+  CTF
Sbjct: 131 YQNVLEHVHQY--------APKPAHNPFTSL-VPDHGVKLTPKHYAYLKISEGCNHRCTF 181

Query: 193 CVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE--------- 243
           C++P  RG  +SR + +++ EA +L + GV E+ ++ Q+ +A  G               
Sbjct: 182 CIIPSMRGDLVSRPVGEIIGEAERLKNAGVKELLVISQDTSA-YGVDTKHSLGFANGSPV 240

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
           +     L   L ++   VRL Y   +P       + A G    ++PYL +P Q  S RIL
Sbjct: 241 RHNIKALSEELGKMGIWVRLHYVYPYPHVDEIIPLMAEG---KVLPYLDIPFQHASPRIL 297

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           K M R   A    + I + R + P++ I S FIVGFPGET++DF+  +D + +    +  
Sbjct: 298 KMMKRPGQAERTLERIKKWREICPELVIRSTFIVGFPGETEEDFQILLDWLKEAQLDRVG 357

Query: 364 SFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK 423
            FKYSP  G   + + +Q+ E+VK +R        +E   +     +G  ++VLI++  +
Sbjct: 358 CFKYSPVEGAAANEIEDQIPEDVKQDRFERFMLVQQEISAAKLQKRIGSTMQVLIDEVDE 417

Query: 424 EK--GKLVGRSPWLQS-VVLNSK-NHNIGDIIKVRITDVKISTLYGELV 468
           E   G+    +P +   V LN + N   G+++ V I       L+G ++
Sbjct: 418 EGAIGRTYADAPEIDGLVYLNGETNLKPGELVNVVIEHADEYDLWGSVL 466


>gi|220936126|ref|YP_002515025.1| 2-alkenal reductase [Thioalkalivibrio sp. HL-EbGR7]
 gi|219997436|gb|ACL74038.1| 2-alkenal reductase [Thioalkalivibrio sp. HL-EbGR7]
          Length = 446

 Score =  386 bits (992), Expect = e-105,   Method: Composition-based stats.
 Identities = 136/468 (29%), Positives = 213/468 (45%), Gaps = 40/468 (8%)

Query: 14  VSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIR 73
           +S+  +Q     R    S GC   + DS R+     ++GY    S +DADL+V+NTC   
Sbjct: 1   MSKSSEQAAGGGRVGFVSLGCPKALVDSERILTQLRAEGYGISPSYEDADLVVVNTCGFI 60

Query: 74  EKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTY 133
           + A E+    +G              +  V+V GC+  AE +++    P V  V GP  Y
Sbjct: 61  DAAVEESLEAIGEA---------LTENGRVIVTGCLG-AEADKVRDAHPGVLAVTGPHAY 110

Query: 134 YRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC 193
             +   + R                 FE L  + GG        A+L I EGC+  C+FC
Sbjct: 111 EAVMAEVHRHLPPSHA---------PFESLVPL-GGVKLTPRHYAYLKISEGCNHRCSFC 160

Query: 194 VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE---------K 244
           ++P  RG  +SR + +V+ EA  L+  GV E+ ++ Q+ +A  G  +            +
Sbjct: 161 IIPQFRGDLVSRPVGEVMQEAENLVAAGVKELLIVSQDTSA-YGVDVKYRTGFWQGRPLR 219

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304
                L  +L  +   VRL Y   +P       + A G    L+PYL +P+Q GS R+LK
Sbjct: 220 THIQQLAEALGSLGVWVRLHYVYPYPHVDQLIPLMAEG---KLLPYLDVPLQHGSPRVLK 276

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
           +M R   + +  + I   R + PDI + S FIVGFPGET+D+F   +  +++    +   
Sbjct: 277 AMRRPAASEKALERIRAWREICPDITLRSTFIVGFPGETEDEFEELLAFIEEAQLDRVGC 336

Query: 365 FKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE 424
           F YSP  G   + + + V E VKAERL    +           A VG+ + VL++    E
Sbjct: 337 FAYSPVEGAAANALPDPVPEEVKAERLERFMEVQAAISADRLQARVGRTLTVLVDGED-E 395

Query: 425 KGKLVGRS----PWLQSVVL--NSKNHNIGDIIKVRITDVKISTLYGE 466
            G ++ RS    P +  VV+  + +    G I+ V IT      L+G+
Sbjct: 396 DGAIIARSSSDAPEIDGVVVIEDGEGLEAGQIVDVEITAASEHDLFGK 443


>gi|268679070|ref|YP_003303501.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Sulfurospirillum
           deleyianum DSM 6946]
 gi|268617101|gb|ACZ11466.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Sulfurospirillum
           deleyianum DSM 6946]
          Length = 438

 Score =  386 bits (991), Expect = e-105,   Method: Composition-based stats.
 Identities = 156/448 (34%), Positives = 242/448 (54%), Gaps = 19/448 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ ++++ GC MNV DS  +       + Y   +++ +ADLI++NTC +REK   K++S 
Sbjct: 7   KKLYIETLGCAMNVRDSEHIIAELGDKENYVLTDNLQEADLILVNTCSVREKPVSKLFSE 66

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G+    K    K      + V GC A   G+EI +R+P VN VVG +   ++   +   
Sbjct: 67  IGKYNLQKKEGAK------IGVCGCTASHLGKEIFKRAPYVNFVVGARNVSKIATAVNTE 120

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           +F    VD DY   D          G  R     A++ I  GCDK CT+C+VP+TRG EI
Sbjct: 121 KF--LSVDIDYDESDYA-------FGDYRNNLYKAYVNISIGCDKKCTYCIVPHTRGDEI 171

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAW--RGKGLDGEKCTFSDLLYSLSEIKGLV 261
           S     ++ EA+K    G  EI LLGQNVN +  R      EK  FSDLL  +SEI+ + 
Sbjct: 172 SIPADLIIKEAQKAAQKGAKEIFLLGQNVNNYGKRFSSSTHEKMDFSDLLNRVSEIEEVE 231

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+T+ HP  M D  ++       +   +H+P+QSGS +IL +M R ++   +     +
Sbjct: 232 RIRFTSPHPLHMDDKFLETFAHNPKVCKSMHMPLQSGSTQILAAMKRGYSKEWFLDRALK 291

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R++ PD++IS+D IVGFPGE+D DF  T+D++ ++ + Q F+FKYS R  T  +    Q
Sbjct: 292 LRAMIPDVSISTDIIVGFPGESDADFEDTLDVMRQVRFEQVFAFKYSARPLTKAAEFTNQ 351

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           VD  V +ERL  LQ            +   +I  V I++  +  G L GR+     V + 
Sbjct: 352 VDNEVASERLDRLQVMQDTILDEIATSRTDKIYPVYIDEL-RNSGFLAGRTDNNALVQIK 410

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELVV 469
              + +G  I ++IT+ K  +LYGE+V+
Sbjct: 411 GDENLLGQTIPIKITNPKRLSLYGEIVL 438


>gi|288572815|ref|ZP_06391172.1| RNA modification enzyme, MiaB family [Dethiosulfovibrio
           peptidovorans DSM 11002]
 gi|288568556|gb|EFC90113.1| RNA modification enzyme, MiaB family [Dethiosulfovibrio
           peptidovorans DSM 11002]
          Length = 442

 Score =  386 bits (991), Expect = e-105,   Method: Composition-based stats.
 Identities = 157/442 (35%), Positives = 249/442 (56%), Gaps = 11/442 (2%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           F +K YGCQMNVYD  ++      +G+  V   D AD++V   C IR+KA  K++S +GR
Sbjct: 4   FCIKVYGCQMNVYDGDKIRTAMILKGWREVPETD-ADVVVYVGCSIRDKAEHKIWSEMGR 62

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
            R             +V + GC+AQ  G ++++R P + ++ GP++   +P+ L RA  G
Sbjct: 63  YRPGWEG----KKSPIVCLVGCMAQNVGRDMMKRFPWIRMIAGPRSIGFIPDGLIRAVSG 118

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           +RV   D    D  E   +      R     A++TI  GCD FCT+C+VPY RG  +SR 
Sbjct: 119 ERV---DLLDADAREFNDLDVVPIKRDNPWKAYVTIAHGCDYFCTYCIVPYVRGRFMSRD 175

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
             ++++E R L+D+GV EI+LLGQNV+   G   D     F+DLL  ++E  G+  +R+ 
Sbjct: 176 SEEILEEIRALVDDGVREISLLGQNVDT-YGADFD-RSYRFADLLRDVAETDGVDLVRFM 233

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
           TS+P+D++  ++    +   + P ++LP+QSGSDRILKSMNR ++  EY + +  IR   
Sbjct: 234 TSYPKDLTADVVSVMAEYPKICPGINLPIQSGSDRILKSMNRHYSIAEYTETVRIIREGL 293

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           P++ ++SD IVGFPGET++DF A+M+ V +  +    +  YSPR GTP + M +Q+ +  
Sbjct: 294 PEVGLTSDLIVGFPGETEEDFMASMEAVRQFRFDLVHTAAYSPRAGTPAAKMEDQLPDEE 353

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GRSPWLQSVVLNSKNH 445
           K  RL  + +      +  N+A VG+   +LI+    +   LV GR+   + V+   +  
Sbjct: 354 KFRRLSEINRLQSSIAMEINEATVGRRYRILIDGPAPKGDGLVQGRTMTDKVVICPGEAS 413

Query: 446 NIGDIIKVRITDVKISTLYGEL 467
             G    V+I   +   L+GE+
Sbjct: 414 WAGRFADVKIVRAENWCLHGEI 435


>gi|310779080|ref|YP_003967413.1| SSU ribosomal protein S12P methylthiotransferase [Ilyobacter
           polytropus DSM 2926]
 gi|309748403|gb|ADO83065.1| SSU ribosomal protein S12P methylthiotransferase [Ilyobacter
           polytropus DSM 2926]
          Length = 448

 Score =  386 bits (991), Expect = e-105,   Method: Composition-based stats.
 Identities = 133/451 (29%), Positives = 223/451 (49%), Gaps = 19/451 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +  + S GC  N+ DS  +  +    +G+E    ++DAD+ ++NTC     A E+    +
Sbjct: 2   KLALISLGCSKNLVDSENLIGIMVNKKGFEITTDIEDADIALINTCGFIGDAKEESIQTI 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             I   K      G    ++VAGC+AQ   +EI+   P V+ V+G     ++ E+++   
Sbjct: 62  LEIGEYKRG----GNLKKIIVAGCLAQRYAQEIINEMPEVDAVIGTGEIDKIEEVVDEVL 117

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGY-NRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            G++++       +  E L+  D          TA+L I EGC++ CT+C++P  RG   
Sbjct: 118 AGRKII-----KSESLEFLANADTDRILTTHPHTAYLKIAEGCNRRCTYCIIPKLRGDLR 172

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR++  +V+EA++L   GV EI LL Q      G  L  +K    D++ +LS+++G+  +
Sbjct: 173 SRNIEDIVEEAQRLAAGGVREINLLAQETTE-YGIDLY-KKKALPDVMKALSKVEGIEWI 230

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R     P  ++D LI+     + +  Y  +PVQ  SD +L++M R  T  + + ++ +IR
Sbjct: 231 RTYYMFPNSITDELIETMKKEEKVCNYFDVPVQHVSDSVLRNMGRAKTGQQIKDLLYKIR 290

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              PD  I +  IVGFPGET++DF    + V +  +     FKYS    T   +M EQ+D
Sbjct: 291 REIPDATIRTTVIVGFPGETEEDFIELKEFVKEFKFDYVGVFKYSREEDTVAHDMDEQID 350

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GRSP----WLQSV 438
           E VK  R + L     E     N   +G+ +EV+I+    E   ++ GR+      +   
Sbjct: 351 EEVKHRRWMELTNLQSEIAEIKNREFIGKTVEVIIDTVSSESEYMLEGRTRGQALEIDGK 410

Query: 439 VL-NSKNHNIGDIIKVRITDVKISTLYGELV 468
           +L N      G+I+KV+I       L G +V
Sbjct: 411 ILTNDGTAKQGEIVKVKIEQNFDYDLLGAIV 441


>gi|50121632|ref|YP_050799.1| ribosomal protein S12 methylthiotransferase [Pectobacterium
           atrosepticum SCRI1043]
 gi|81644718|sp|Q6D3N6|RIMO_ERWCT RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|49612158|emb|CAG75608.1| conserved hypothetical protein [Pectobacterium atrosepticum
           SCRI1043]
          Length = 442

 Score =  386 bits (991), Expect = e-105,   Method: Composition-based stats.
 Identities = 132/464 (28%), Positives = 221/464 (47%), Gaps = 35/464 (7%)

Query: 18  VDQCIVPQ-RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA 76
           +     PQ R    S GC  N+ DS R+     ++GY+ V   DDA+L+++NTC   + A
Sbjct: 1   MSNISTPQPRIGFVSLGCPKNLVDSERILTELRTEGYQVVPRYDDAELVIVNTCGFIDSA 60

Query: 77  AEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL 136
            ++    +G              +  V+V GC+  A+  +I    P V  + GP +Y ++
Sbjct: 61  VQESLEAIGEA---------LNENGKVIVTGCLG-AKENQIREVHPKVLEITGPHSYEQV 110

Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
              + +               + F  L + + G        A+L I EGC+  CTFC++P
Sbjct: 111 LSHVHQY--------VPKPTHNPFTSL-VPEQGVKLTPRHYAYLKISEGCNHRCTFCIIP 161

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFS 248
             RG   SR +  V+DEA++L++ GV E+ ++ Q+ +A+      R    +G+  K +  
Sbjct: 162 SMRGDLDSRPIGSVLDEAKRLVNAGVKELLVISQDTSAYGADVKQRTGFWNGQPVKTSMV 221

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
            L   L+ +   VRL Y   +P       + A G    ++PYL +P+Q  S +ILK M R
Sbjct: 222 SLCEQLASLGVWVRLHYVYPYPHVDDVIPLMAEG---KILPYLDIPLQHASPKILKLMKR 278

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
                   + I R R + PD+ + S FIVGFPGET++DF+  +D + +    +   FK+S
Sbjct: 279 PGAVERTLERIKRWREICPDLTLRSTFIVGFPGETEEDFQMLLDFLKEAKLDRVGCFKFS 338

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--G 426
           P  G   + + +QV E VK ER     +  +          +G+ + VLI++  +E   G
Sbjct: 339 PVEGAAANELPDQVPEEVKEERFHRFMQLQQAISTQRLQDKIGREVLVLIDEIDEEGAIG 398

Query: 427 KLVGRSPWLQS-VVLNSK-NHNIGDIIKVRITDVKISTLYGELV 468
           + +  +P +   V LN +    +GDI+KV++       L+G  V
Sbjct: 399 RSMADAPEIDGAVYLNGETGVKVGDIVKVKVEHADEYDLWGSRV 442


>gi|56414051|ref|YP_151126.1| ribosomal protein S12 methylthiotransferase [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|81360331|sp|Q5PGP7|RIMO_SALPA RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|56128308|gb|AAV77814.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
          Length = 441

 Score =  386 bits (991), Expect = e-105,   Method: Composition-based stats.
 Identities = 131/455 (28%), Positives = 221/455 (48%), Gaps = 34/455 (7%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC  N+ DS R+     ++GY+ V   DDAD++++NTC   + A ++    +G
Sbjct: 9   KIGFVSLGCPKNLVDSERILTELRTEGYDVVPRYDDADMVIVNTCGFIDSAVQESLEAIG 68

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                         +  V+V GC+  A+ ++I    P V  + GP +Y ++ + +     
Sbjct: 69  EA---------LNENGKVIVTGCLG-AKEDQIREVHPKVLEITGPHSYEQVLQHVHHY-- 116

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                       + F  L + + G        A+L I EGC+  CTFC++P  RG  +SR
Sbjct: 117 ------VPKPKHNPFLSL-VPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGDLVSR 169

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNA------WRGKGLDGE--KCTFSDLLYSLSEI 257
            +  V+ EA++L+D GV EI ++ Q+ +A       R    +GE  K +   L   LS++
Sbjct: 170 PIGDVLSEAKRLVDAGVKEILVISQDTSAYGVDVKHRTGFHNGEPVKTSMVSLCEQLSKL 229

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
               RL Y   +P       + A G    ++PYL +P+Q  S RILK M R  +      
Sbjct: 230 GVWTRLHYVYPYPHVDDVIPLMAEG---KILPYLDIPLQHASPRILKLMKRPGSVDRQLA 286

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
            I + R + P++ + S FIVGFPGET++DF+  +D + +    +   FKYSP  G   + 
Sbjct: 287 RIKQWREICPELTLRSTFIVGFPGETEEDFQMLLDFLKEARLDRVGCFKYSPVEGAGANE 346

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPWL 435
           + +QV E VK ER     +  ++         VG+ I V++++  +E   G+ +  +P +
Sbjct: 347 LPDQVPEEVKEERWNRFMQLQQQISAERLQEKVGREILVIVDEVDEEGAIGRSMADAPEI 406

Query: 436 QS-VVLNSK-NHNIGDIIKVRITDVKISTLYGELV 468
              V LN + N  +GDI++V++ +     L+G  V
Sbjct: 407 DGAVYLNGETNVKLGDIVRVKVENADEYDLWGSRV 441


>gi|183221201|ref|YP_001839197.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Leptospira
           biflexa serovar Patoc strain 'Patoc 1 (Paris)']
 gi|189911292|ref|YP_001962847.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Leptospira
           biflexa serovar Patoc strain 'Patoc 1 (Ames)']
 gi|229890556|sp|B0S9E2|MIAB_LEPBA RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|229890557|sp|B0SS31|MIAB_LEPBP RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|167775968|gb|ABZ94269.1| 2-methylthioadenine synthetase [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167779623|gb|ABZ97921.1| Putative tRNA-i(6)A37 modification enzyme MiaB [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Paris)']
          Length = 458

 Score =  386 bits (991), Expect = e-105,   Method: Composition-based stats.
 Identities = 171/465 (36%), Positives = 270/465 (58%), Gaps = 24/465 (5%)

Query: 15  SQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIRE 74
           SQ +   I   + +V++YGCQMN YDS  ++++F  + YE  N ++++D+I LNTC +RE
Sbjct: 8   SQTLTPTIQLGKVYVETYGCQMNEYDSGIVKELFRKEHYETTNVVEESDIIFLNTCAVRE 67

Query: 75  KAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYY 134
            A  K+Y  L  +  LK    K+  +L++ V GC+AQ  GE++  +   ++++VGP  Y 
Sbjct: 68  NAHAKIYGRLQSLGYLK----KKNPNLVIGVLGCMAQNLGEDLFHQELPLDLIVGPDNYR 123

Query: 135 RLPELLERARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC 193
            LPEL++  R G++ V  T  S  + ++ L           G+ AF+TI  GC+ FCTFC
Sbjct: 124 TLPELIQNIRNGEKDVQLTRLSRSETYDELEP-----KVVNGIQAFVTIMRGCNNFCTFC 178

Query: 194 VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS 253
           VVPYTRG E SR    ++ E ++L + GV ++TLLGQNVN++  +  D     F  L+ S
Sbjct: 179 VVPYTRGRERSREPKSIIHEIKQLQEMGVKQVTLLGQNVNSYSYESYD-----FCALVES 233

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
           + +   + R+R+T+ HP+D  D LI      D     +H+P+Q+GS ++L+ M R +T  
Sbjct: 234 ILKETTIERVRFTSPHPKDFPDHLISLMAKEDRFSSQIHMPLQAGSSKVLRDMKRSYTKE 293

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
           EY  ++ +I+SV PDI I+SD IVGFPGET+++F  T+++V K+ +  ++ FKYS R GT
Sbjct: 294 EYLDLVKKIQSVIPDIGITSDIIVGFPGETEEEFLETLEVVKKVKFDMSYMFKYSEREGT 353

Query: 374 PG-SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGR 431
                 ++ V E VK+ RL+ L +   +  +  N + +G+I  +LIE   K+ K +L GR
Sbjct: 354 IAKRKFIDDVPEEVKSRRLIELVELQTKISLEKNTSKIGKIFSILIENTSKKSKQELCGR 413

Query: 432 SPWLQSVVLNSKN-------HNIGDIIKVRITDVKISTLYGELVV 469
           S   + VV              IG  + V I     +TL G+L+V
Sbjct: 414 SHCGRMVVFPIPEGMSQDLSDWIGKTVNVLIEQATSATLKGKLIV 458


>gi|255994069|ref|ZP_05427204.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Eubacterium saphenum ATCC
           49989]
 gi|255993737|gb|EEU03826.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Eubacterium saphenum ATCC
           49989]
          Length = 440

 Score =  386 bits (991), Expect = e-105,   Method: Composition-based stats.
 Identities = 170/443 (38%), Positives = 253/443 (57%), Gaps = 16/443 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           ++ + ++GCQMN  DS  +  +  S G     S+++AD++V+NTC IRE A  K Y  LG
Sbjct: 8   KYNIITFGCQMNERDSESIAGILKSHGLTSA-SIEEADIVVINTCSIRENANNKFYGTLG 66

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERA 143
            ++N+K    K G DL+V V GC+ Q     E++  R P V+V+ G     R+ +L+   
Sbjct: 67  IVKNIKKKLKKNGDDLVVCVCGCMMQEGEVVEDLKARFPFVDVIFGTHNIDRVYDLI--- 123

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
               + ++T     +  E   I +   +R     AF+ I  GC+ FCT+C+VPYTRG E 
Sbjct: 124 ---IKTIETKRREIEILENAEIKEMPVDRVNKHKAFVNITFGCNNFCTYCIVPYTRGREK 180

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SRSL +++ E    +  G  E+T LGQNVN++RG+        F D+L   S+I+GL R+
Sbjct: 181 SRSLDKILGETADAVSLGAKEVTFLGQNVNSYRGE----NGENFRDVLVEASKIQGLERI 236

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+ TSHP+D++D LI     LD +MP++HLPVQSGS  ILK MNR +    Y +IID+I 
Sbjct: 237 RFMTSHPKDLTDELIDVM-SLDKIMPHIHLPVQSGSSEILKRMNRHYDRERYLEIIDKIY 295

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           S+  DIAI++D IVGFP ET++DF  T+DLV +  +  AF+F YS R  T  +N   QVD
Sbjct: 296 SLNEDIAITTDIIVGFPTETEEDFSKTLDLVRRARFDAAFTFMYSKRRNTKAANFDGQVD 355

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
                 R   L + L++     N   +G+ I+V+++K   +  +  GRSP  + V    K
Sbjct: 356 RVEMGRRFDMLSELLKDISFEKNKKFIGRRIKVMVDKIEGDNAE--GRSPEFKLVKFYGK 413

Query: 444 NHNIGDIIKVRITDVKISTLYGE 466
           N   GDI+ V +      +L G+
Sbjct: 414 NIKKGDILDVVVDRASPFSLSGK 436


>gi|197286995|ref|YP_002152867.1| ribosomal protein S12 methylthiotransferase [Proteus mirabilis
           HI4320]
 gi|227354764|ref|ZP_03839181.1| 2-methylthioadenine synthetase [Proteus mirabilis ATCC 29906]
 gi|238066464|sp|B4F137|RIMO_PROMH RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|194684482|emb|CAR46244.1| conserved hypothetical protein [Proteus mirabilis HI4320]
 gi|227165082|gb|EEI49913.1| 2-methylthioadenine synthetase [Proteus mirabilis ATCC 29906]
          Length = 443

 Score =  386 bits (991), Expect = e-105,   Method: Composition-based stats.
 Identities = 124/463 (26%), Positives = 221/463 (47%), Gaps = 34/463 (7%)

Query: 18  VDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA 77
           + Q     +    S GC  N+ DS R+     ++GY+ V + DDADL+++NTC   + A 
Sbjct: 1   MSQTNQVPKIGFVSLGCPKNLVDSERILTELRTEGYQVVPTYDDADLVIVNTCGFIDSAV 60

Query: 78  EKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLP 137
           ++    +G   +             V+V GC+  A+  +I    P V  + GP +Y ++ 
Sbjct: 61  QESLEAIGEALDENGK---------VIVTGCLG-AKENQIREVHPKVLEITGPHSYEQVL 110

Query: 138 ELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197
             +                 + F  L + + G        A+L I EGC+  CTFC++P 
Sbjct: 111 SHIHHY--------VPKPSHNPFTSL-VPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPS 161

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK------GLDGE--KCTFSD 249
            RG   SR + +V++EA++L++ GV E+ ++ Q+ +A+           DG   K +   
Sbjct: 162 MRGDLDSRPIGEVLNEAKRLVNAGVKELLVISQDTSAYGVDTKHQTGFWDGMPVKTSMVS 221

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
           L   L+++   VRL Y   +P       + A G    ++PYL +P+Q  S ++LK M R 
Sbjct: 222 LCEQLAKLGIWVRLHYVYPYPHVDEVIPLMAEG---KILPYLDIPLQHASPKVLKLMKRP 278

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369
            +     + + R R + P++ + S FIVGFPGET++DF+  +D + +    +   FKYSP
Sbjct: 279 GSVERTLERVKRWREICPELTLRSTFIVGFPGETEEDFQMLLDFLTEARLDRVGCFKYSP 338

Query: 370 RLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GK 427
             G   + + +QV E VK ER     +  ++         +G+++ V+I++  +E   G+
Sbjct: 339 VEGAKANELPDQVPEEVKEERYHRFMQLQQQISTERLQEKIGKVLPVIIDEVDEEGAIGR 398

Query: 428 LVGRSPWLQSVVLNSK--NHNIGDIIKVRITDVKISTLYGELV 468
            +  +P +   V  ++  +   G I++V I       L+G +V
Sbjct: 399 SMADAPEIDGAVYLNEQFDVEPGQIVRVLIEHADEYDLWGTIV 441


>gi|121729038|ref|ZP_01682039.1| conserved hypothetical protein [Vibrio cholerae V52]
 gi|147675671|ref|YP_001218113.1| hypothetical protein VC0395_A2197 [Vibrio cholerae O395]
 gi|262170131|ref|ZP_06037820.1| MiaB-like tRNA modifying enzyme YliG [Vibrio cholerae RC27]
 gi|238055296|sp|A5F514|RIMO_VIBC3 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|121628686|gb|EAX61157.1| conserved hypothetical protein [Vibrio cholerae V52]
 gi|146317554|gb|ABQ22093.1| conserved hypothetical protein [Vibrio cholerae O395]
 gi|227014508|gb|ACP10718.1| conserved hypothetical protein [Vibrio cholerae O395]
 gi|262021539|gb|EEY40251.1| MiaB-like tRNA modifying enzyme YliG [Vibrio cholerae RC27]
          Length = 470

 Score =  386 bits (991), Expect = e-105,   Method: Composition-based stats.
 Identities = 130/469 (27%), Positives = 217/469 (46%), Gaps = 36/469 (7%)

Query: 13  MVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHI 72
           +  Q  +      +    S GC  N+ DS R+     ++GYE VNS  D+D++++NTC  
Sbjct: 21  IAEQSQNSQTTGNKIGFVSLGCPKNLVDSERILTQLRTEGYEIVNSYHDSDVVIVNTCGF 80

Query: 73  REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT 132
            + A ++    +G    LK +         V+V GC+   E +EI +  P V  + GP  
Sbjct: 81  IDSAVQESLDTIGEA--LKENGK-------VIVTGCLGARE-DEIRQVHPNVLGITGPHA 130

Query: 133 YYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTF 192
           Y  + E + +               + F  L + D G        A+L I EGC+  CTF
Sbjct: 131 YQNVLEHVHQY--------APKPAHNPFTSL-VPDHGVKLTPKHYAYLKISEGCNHRCTF 181

Query: 193 CVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE--------- 243
           C++P  RG  +SR + +++ EA +L + GV E+ ++ Q+ +A  G               
Sbjct: 182 CIIPSMRGDLVSRPVGEIIGEAERLKNAGVKELLVISQDTSA-YGVDTKHSLGFANGSPV 240

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
           +     L   L ++   VRL Y   +P       + A G    ++PYL +P Q  S R+L
Sbjct: 241 RHNIKALSEELGKMGIWVRLHYVYPYPHVDEIIPLMAEG---KVLPYLDIPFQHASPRVL 297

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           K M R   A    + I + R + P++ I S FIVGFPGET++DF+  +D + +    +  
Sbjct: 298 KMMKRPGQAERTLERIKKWREICPELVIRSTFIVGFPGETEEDFQILLDWLKEAQLDRVG 357

Query: 364 SFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK 423
            FKYSP  G   + + +Q+ E+VK +R        +E   +     +G  ++VLI++   
Sbjct: 358 CFKYSPVEGAAANEIEDQIPEDVKQDRFERFMLVQQEISAAKLQKRIGSTMQVLIDEVDD 417

Query: 424 EK--GKLVGRSPWLQS-VVLNSK-NHNIGDIIKVRITDVKISTLYGELV 468
           E   G+    +P +   V LN + N   G+++ V I       L+G ++
Sbjct: 418 EGAIGRTYADAPEIDGLVYLNGETNLKPGELVNVVIEHADEYDLWGSVL 466


>gi|227082736|ref|YP_002811287.1| hypothetical protein VCM66_2540 [Vibrio cholerae M66-2]
 gi|298500557|ref|ZP_07010361.1| MiaB-like tRNA modifying enzyme YliG [Vibrio cholerae MAK 757]
 gi|227010624|gb|ACP06836.1| conserved hypothetical protein [Vibrio cholerae M66-2]
 gi|297540726|gb|EFH76783.1| MiaB-like tRNA modifying enzyme YliG [Vibrio cholerae MAK 757]
          Length = 470

 Score =  385 bits (990), Expect = e-105,   Method: Composition-based stats.
 Identities = 130/469 (27%), Positives = 217/469 (46%), Gaps = 36/469 (7%)

Query: 13  MVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHI 72
           +  Q  +      +    S GC  N+ DS R+     ++GYE VNS  D+D++++NTC  
Sbjct: 21  IAEQSQNSQTTGNKIGFVSLGCPKNLVDSERILTQLRTEGYEIVNSYHDSDVVIVNTCGF 80

Query: 73  REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT 132
            + A ++    +G    LK +         V+V GC+   E +EI +  P V  + GP  
Sbjct: 81  IDSAVQESLDTIGEA--LKENG-------QVIVTGCLGARE-DEIRQVHPNVLGITGPHA 130

Query: 133 YYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTF 192
           Y  + E + +               + F  L + D G        A+L I EGC+  CTF
Sbjct: 131 YQNVLEHVHQY--------APKPAHNPFTSL-VPDHGVKLTPKHYAYLKISEGCNHRCTF 181

Query: 193 CVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE--------- 243
           C++P  RG  +SR + +++ EA +L + GV E+ ++ Q+ +A  G               
Sbjct: 182 CIIPSMRGDLVSRPVGEIIGEAERLKNAGVKELLVISQDTSA-YGVDTKHSLGFANGSPV 240

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
           +     L   L ++   VRL Y   +P       + A G    ++PYL +P Q  S R+L
Sbjct: 241 RHNIKALSEELGKMGIWVRLHYVYPYPHVDEIIPLMAEG---KVLPYLDIPFQHASPRVL 297

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           K M R   A    + I + R + P++ I S FIVGFPGET++DF+  +D + +    +  
Sbjct: 298 KMMKRPGQAERTLERIKKWREICPELVIRSTFIVGFPGETEEDFQILLDWLKEAQLDRVG 357

Query: 364 SFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK 423
            FKYSP  G   + + +Q+ E+VK +R        +E   +     +G  ++VLI++   
Sbjct: 358 CFKYSPVEGAAANEIEDQIPEDVKQDRFERFMLVQQEISAAKLQKRIGSTMQVLIDEVDD 417

Query: 424 EK--GKLVGRSPWLQS-VVLNSK-NHNIGDIIKVRITDVKISTLYGELV 468
           E   G+    +P +   V LN + N   G+++ V I       L+G ++
Sbjct: 418 EGAIGRTYADAPEIDGLVYLNGETNLKPGELVNVVIEHADEYDLWGSVL 466


>gi|262166639|ref|ZP_06034376.1| ribosomal protein S12p Asp88 methylthiotransferase [Vibrio mimicus
           VM223]
 gi|262026355|gb|EEY45023.1| ribosomal protein S12p Asp88 methylthiotransferase [Vibrio mimicus
           VM223]
          Length = 470

 Score =  385 bits (990), Expect = e-105,   Method: Composition-based stats.
 Identities = 130/469 (27%), Positives = 216/469 (46%), Gaps = 36/469 (7%)

Query: 13  MVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHI 72
           +  Q         +    S GC  N+ DS R+     ++GYE VNS  D+D++++NTC  
Sbjct: 21  IAEQSQSSQTTGNKIGFVSLGCPKNLVDSERILTQLRTEGYEIVNSYHDSDVVIVNTCGF 80

Query: 73  REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT 132
            + A ++    +G    LK +         V+V GC+   E +EI +  P V  + GP  
Sbjct: 81  IDSAVQESLDTIGEA--LKENGK-------VIVTGCLGARE-DEIRQVHPNVLGITGPHA 130

Query: 133 YYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTF 192
           Y  + E + +               + F  L + D G        A+L I EGC+  CTF
Sbjct: 131 YQNVLEHVHQY--------APKPAHNPFTSL-VPDHGVKLTPKHYAYLKISEGCNHRCTF 181

Query: 193 CVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE--------- 243
           C++P  RG  +SR + +++ EA +L + GV E+ ++ Q+ +A  G               
Sbjct: 182 CIIPSMRGDLVSRPVGEIIGEAERLKNAGVKELLVISQDTSA-YGVDTKHSLGFSNGSPV 240

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
           +     L   L ++   VRL Y   +P       + A G    ++PYL +P Q  S R+L
Sbjct: 241 RHNIKALSEELGKMGIWVRLHYVYPYPHVDEIIPLMAEG---KVLPYLDIPFQHASPRVL 297

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           K M R   A    + I + R + P++ I S FIVGFPGET++DF+  +D + +    +  
Sbjct: 298 KMMKRPGQAERTLERIKKWREICPELVIRSTFIVGFPGETEEDFQILLDWLKEAQLDRVG 357

Query: 364 SFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK 423
            FKYSP  G   + + +Q+ E VK +R        +E   +     +G  ++VLI++  +
Sbjct: 358 CFKYSPVEGAAANEIEDQIPEEVKQDRFERFMLVQQEISAAKLQKRIGSTMQVLIDEVDE 417

Query: 424 EK--GKLVGRSPWLQS-VVLNSK-NHNIGDIIKVRITDVKISTLYGELV 468
           E   G+    +P +   V LN + N   G+++ V I       L+G ++
Sbjct: 418 EGAIGRTYADAPEIDGLVYLNGETNLKPGELVNVVIEHADEYDLWGSVL 466


>gi|331001874|ref|ZP_08325395.1| MiaB-like tRNA modifying enzyme YliG [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330412197|gb|EGG91591.1| MiaB-like tRNA modifying enzyme YliG [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 440

 Score =  385 bits (990), Expect = e-105,   Method: Composition-based stats.
 Identities = 127/449 (28%), Positives = 223/449 (49%), Gaps = 16/449 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +  + S GC  N  DS  M  +   +G+E  +  ++A+++++NTC   + A E+  + + 
Sbjct: 2   KMSMVSLGCDKNTVDSEMMLGLMNEKGFEYTDIDEEAEVMIINTCGFIQSAKEESINAIL 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
               LK     +G    ++V GC+AQ   +EI++  P V+ ++G  ++ ++ E +E    
Sbjct: 62  DAARLKE----DGALKALIVTGCLAQRYKDEIIKEIPEVDALLGTSSFDKIVETVEDVLG 117

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G+  +  ++   D+    SI +   N   G  A+L I EGC+K CT+C++P  RG   S 
Sbjct: 118 GE--IKNEFLDLDRLP--SISNKRKNSTGGYYAYLKIAEGCNKNCTYCIIPSLRGNYRSY 173

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            +  ++ +A+ L   G+ E+ L+ Q      G  L GEK T   LL  L+++ G+  +R 
Sbjct: 174 PMDDLITQAKDLAAQGIKELILVAQETT-LYGVDLYGEK-TLPKLLKELAKVSGIEWIRI 231

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
              +P +++D LI    + + +  YL +P+Q  SD IL+ M RR T  +   II ++R  
Sbjct: 232 LYCYPEEITDELIDVIANEEKVCKYLDIPIQHASDNILRRMARRTTHDDLVSIIGKLRKN 291

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P I + +  I GFPGET+ D    +  + ++ + +   F YS   GT  +    Q+DE 
Sbjct: 292 IPGITLRTTIISGFPGETEKDLETVIKFIKEMKFERLGVFTYSEEEGTVAAGFENQIDEE 351

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQS-VVL 440
            K  R   + +  +E   +     VG+  +VLIE    E+   +GR+    P +   V +
Sbjct: 352 EKEARRDRIMRVQQEVSENNLLNMVGRTFKVLIEGRLPEENVYIGRTYMDVPGVDGYVFV 411

Query: 441 NSKNHNI-GDIIKVRITDVKISTLYGELV 468
           N+  + I GD   V IT      L G+++
Sbjct: 412 NTDKNFISGDFCDVIITGSSEYDLIGDVL 440


>gi|238913831|ref|ZP_04657668.1| hypothetical protein SentesTe_22240 [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
          Length = 441

 Score =  385 bits (990), Expect = e-105,   Method: Composition-based stats.
 Identities = 131/455 (28%), Positives = 220/455 (48%), Gaps = 34/455 (7%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC  N+ DS R+     ++GY+ V   DDAD++++NTC   + A ++    +G
Sbjct: 9   KIGFVSLGCPKNLVDSERILTELRTEGYDVVPRYDDADMVIVNTCGFIDSAVQESLEAIG 68

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                         +  V+V GC+  A+ ++I    P V  + GP +Y ++ + +     
Sbjct: 69  EA---------LNENGKVIVTGCLG-AKEDQIREVHPKVLEITGPHSYEQVLQHVHHY-- 116

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                       + F  L + + G        A+L I EGC+  CTFC++P  RG  +SR
Sbjct: 117 ------VPKPKHNPFLSL-VPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGDLVSR 169

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNA------WRGKGLDGE--KCTFSDLLYSLSEI 257
            +  V+ EA++L+D GV EI ++ Q+ +A       R    +GE  K +   L   LS++
Sbjct: 170 PIGDVLSEAKRLVDAGVKEILVISQDTSAYGVDVKHRTGFHNGEPVKTSMVSLCEQLSKL 229

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
               RL Y   +P       + A G    ++PYL +P+Q  S RILK M R  +      
Sbjct: 230 GVWTRLHYVYPYPHVDDVIPLMAEG---KILPYLDIPLQHASPRILKLMKRPGSVDRQLA 286

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
            I + R + P++ + S FIVGFPGET++DF+  +D + +    +   FKYSP  G   + 
Sbjct: 287 RIKQWREICPELTLRSTFIVGFPGETEEDFQMLLDFLKEARLDRVGCFKYSPVEGAGANE 346

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPWL 435
           + +QV E VK ER     +  ++         VG+ I V++++  +E   G+ +  +P +
Sbjct: 347 LPDQVPEEVKVERWNRFMQLQQQISAERLQEKVGREILVIVDEVDEEGAIGRSMADAPEI 406

Query: 436 QS-VVLNSK-NHNIGDIIKVRITDVKISTLYGELV 468
              V LN + N   GDI++V++ +     L+G  V
Sbjct: 407 DGAVYLNGETNVKPGDIVRVKVENADEYDLWGSRV 441


>gi|258625718|ref|ZP_05720597.1| conserved hypothetical protein [Vibrio mimicus VM603]
 gi|262170444|ref|ZP_06038122.1| ribosomal protein S12p Asp88 methylthiotransferase [Vibrio mimicus
           MB-451]
 gi|258581956|gb|EEW06826.1| conserved hypothetical protein [Vibrio mimicus VM603]
 gi|261891520|gb|EEY37506.1| ribosomal protein S12p Asp88 methylthiotransferase [Vibrio mimicus
           MB-451]
          Length = 470

 Score =  385 bits (990), Expect = e-105,   Method: Composition-based stats.
 Identities = 130/469 (27%), Positives = 216/469 (46%), Gaps = 36/469 (7%)

Query: 13  MVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHI 72
           +  Q         +    S GC  N+ DS R+     ++GYE VNS  D+D++++NTC  
Sbjct: 21  IAEQSQSSQTTGNKIGFVSLGCPKNLVDSERILTQLRTEGYEIVNSYHDSDVVIVNTCGF 80

Query: 73  REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT 132
            + A ++    +G    LK +         V+V GC+   E +EI +  P V  + GP  
Sbjct: 81  IDSAVQESLDTIGEA--LKENGK-------VIVTGCLGARE-DEIRQVHPNVLGITGPHA 130

Query: 133 YYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTF 192
           Y  + E + +               + F  L + D G        A+L I EGC+  CTF
Sbjct: 131 YQNVLEHVHQY--------APKPAHNPFTSL-VPDHGVKLTPKHYAYLKISEGCNHRCTF 181

Query: 193 CVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE--------- 243
           C++P  RG  +SR + +++ EA +L + GV E+ ++ Q+ +A  G               
Sbjct: 182 CIIPSMRGDLVSRPVGEIIGEAERLKNAGVKELLVISQDTSA-YGVDTKHSLGFANGSPV 240

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
           +     L   L ++   VRL Y   +P       + A G    ++PYL +P Q  S R+L
Sbjct: 241 RHNIKALSEELGKMGIWVRLHYVYPYPHVDEIIPLMAEG---KVLPYLDIPFQHASPRVL 297

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           K M R   A    + I + R + P++ I S FIVGFPGET++DF+  +D + +    +  
Sbjct: 298 KMMKRPGQAERTLERIKKWREICPELVIRSTFIVGFPGETEEDFQILLDWLKEAQLDRVG 357

Query: 364 SFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK 423
            FKYSP  G   + + +Q+ E VK +R        +E   +     +G  ++VLI++  +
Sbjct: 358 CFKYSPVEGAAANEIEDQIPEEVKQDRFERFMLVQQEISAAKLQKRIGSTMQVLIDEVDE 417

Query: 424 EK--GKLVGRSPWLQS-VVLNSK-NHNIGDIIKVRITDVKISTLYGELV 468
           E   G+    +P +   V LN + N   G+++ V I       L+G ++
Sbjct: 418 EGAIGRTYADAPEIDGLVYLNGETNLKPGELVNVVIEHADEYDLWGSVL 466


>gi|217076413|ref|YP_002334129.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Thermosipho africanus
           TCF52B]
 gi|229891011|sp|B7IFC4|MIAB_THEAB RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|217036266|gb|ACJ74788.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Thermosipho africanus
           TCF52B]
          Length = 429

 Score =  385 bits (990), Expect = e-105,   Method: Composition-based stats.
 Identities = 156/444 (35%), Positives = 243/444 (54%), Gaps = 20/444 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +FF+K+YGCQMN  DS         +GYE   + ++AD+++LNTC +R+KA +K  S +G
Sbjct: 2   KFFIKTYGCQMNENDSEVARYYLEQEGYESAENENEADIVILNTCVVRKKAEDKFLSTIG 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +R              + V GC A+   E++ +R   VN V+G +   R+PE +E +  
Sbjct: 62  ELRKKNKK---------IGVMGCGAEKLKEDLFKR--GVNFVIGTRAISRIPEAVELSIK 110

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           GK+    D  +++             R     A++TI  GC++FCT+C+VPYTRG E SR
Sbjct: 111 GKKAAIFDDKLDEID-----YRNILKRNSKHHAWITIIYGCNRFCTYCIVPYTRGREKSR 165

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            +  ++ E + L  NGV EIT LGQNV+A  GK L+ +  + + LL    +I+ + R+ +
Sbjct: 166 KMDDILREVKNLSLNGVREITYLGQNVDA-YGKDLN-DGTSLAKLLNETKKIENIERIWF 223

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
            TS+P D S  + +     + +   +HLPVQ GS++ILK MNRR+T  EY ++I  IR +
Sbjct: 224 LTSYPTDFSLDIAREIASSEKIAKSIHLPVQHGSNKILKKMNRRYTIEEYYELIKSIREI 283

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM-LEQVDE 384
            PD +ISSD IVGFP ET+DDF+ T+ LV++I + +     YSPR GT       + V  
Sbjct: 284 VPDASISSDIIVGFPDETEDDFQQTVKLVEEIKFERLNLAIYSPREGTIAWKYFEDNVPR 343

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
            +K  R+  L    +E     N++ + + +EV++E+  K  G   GR    + +      
Sbjct: 344 AIKTRRMAYLLNLQKEINKMLNESYLDKTVEVIVEERAK-SGLFYGRDIRNKIIAFEGDE 402

Query: 445 HNIGDIIKVRITDVKISTLYGELV 468
             IG  I V+I       LYG+++
Sbjct: 403 SLIGKKILVKIKKTTAGPLYGDII 426


>gi|162452546|ref|YP_001614913.1| hypothetical protein sce4270 [Sorangium cellulosum 'So ce 56']
 gi|238066605|sp|A9F1Y8|RIMO_SORC5 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|161163128|emb|CAN94433.1| hypothetical protein sce4270 [Sorangium cellulosum 'So ce 56']
          Length = 488

 Score =  385 bits (990), Expect = e-105,   Method: Composition-based stats.
 Identities = 124/457 (27%), Positives = 212/457 (46%), Gaps = 20/457 (4%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           +  ++    S GC  N  DS  M  +  + G+  V+   +A++IV+NTC    +A ++  
Sbjct: 1   MSSRKVHFVSLGCPKNRVDSEVMLGVARAAGFAHVDDAAEAEVIVVNTCGFIGEAKKESI 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             +  +   K      G    +VVAGC++Q   EE+ R  P V+  +G     +    L 
Sbjct: 61  DAIFEMAQHKE----HGSCKRLVVAGCLSQRHPEELAREMPEVDHFLGSSDMLK----LG 112

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           R   G        +  +    +   D       G +A++ I EGC++ C+FCV+P  RG 
Sbjct: 113 RVLAGDAERMLVGNPAEWL--IQAGDPRTLSTPGGSAYVKIAEGCNRTCSFCVIPDLRGA 170

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR----GKGLDGEKCTFSDLLYSLSEI 257
           + SR +  VV E  +L   GV EI L+ Q+  A+     G+   G + T + L+  ++++
Sbjct: 171 QRSRPIPDVVREVEQLAAAGVREINLISQDTIAYGRDAAGRSEGGARATLAQLVERVADV 230

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
            G+  +R    +P  M+D L++       ++PY+ +P+Q  +D +L+ M R H     R+
Sbjct: 231 PGVRWVRLFYLYPETMTDDLVELLAGHPRVVPYVDMPLQHAADAMLRRMRRGHGGDRLRR 290

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
           ++  +R   PD+   + FIVG PGETD +F    D V    + +   F+YS    +    
Sbjct: 291 VVSTLRERVPDLTFRTAFIVGHPGETDAEFEELCDFVRWAEFERVGVFRYSDEEASRSYE 350

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-----GKLVGRS 432
           +  +V     A R   L    R      + A +G+ +EVL+E    E      G+  G++
Sbjct: 351 LEGKVPARTAASRYRRLMTLQRRISHKKSAAMIGRELEVLVEGTSDEHEYVLMGRHAGQA 410

Query: 433 PWLQS-VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           P +   V L+      G++ +VRIT      L GEL+
Sbjct: 411 PEIDGQVYLSGGEVRPGEMCRVRITQASDYDLVGELL 447


>gi|26246810|ref|NP_752850.1| ribosomal protein S12 methylthiotransferase [Escherichia coli
           CFT073]
 gi|91209869|ref|YP_539855.1| ribosomal protein S12 methylthiotransferase [Escherichia coli
           UTI89]
 gi|110641037|ref|YP_668767.1| hypothetical protein ECP_0849 [Escherichia coli 536]
 gi|117623015|ref|YP_851928.1| hypothetical protein APECO1_1258 [Escherichia coli APEC O1]
 gi|191173725|ref|ZP_03035248.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli F11]
 gi|218557739|ref|YP_002390652.1| ribosomal protein S12 methylthiotransferase [Escherichia coli S88]
 gi|218688618|ref|YP_002396830.1| ribosomal protein S12 methylthiotransferase [Escherichia coli ED1a]
 gi|227884201|ref|ZP_04002006.1| 2-methylthioadenine synthetase [Escherichia coli 83972]
 gi|237707202|ref|ZP_04537683.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|300991871|ref|ZP_07179696.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Escherichia coli
           MS 200-1]
 gi|300993439|ref|ZP_07180381.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Escherichia coli
           MS 45-1]
 gi|301051237|ref|ZP_07198066.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Escherichia coli
           MS 185-1]
 gi|331656857|ref|ZP_08357819.1| putative Fe-S oxidoreductase family 1 [Escherichia coli TA206]
 gi|331682343|ref|ZP_08382962.1| putative Fe-S oxidoreductase family 1 [Escherichia coli H299]
 gi|81477710|sp|Q8FJK5|RIMO_ECOL6 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|122424474|sp|Q1RE90|RIMO_ECOUT RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|123344201|sp|Q0TJL3|RIMO_ECOL5 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|238065340|sp|B7MGU2|RIMO_ECO45 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|238065344|sp|B7MQT8|RIMO_ECO81 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|238065348|sp|A1A974|RIMO_ECOK1 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|26107209|gb|AAN79393.1|AE016757_297 Hypothetical protein yliG [Escherichia coli CFT073]
 gi|91071443|gb|ABE06324.1| hypothetical protein YliG [Escherichia coli UTI89]
 gi|110342629|gb|ABG68866.1| hypothetical protein YliG [Escherichia coli 536]
 gi|115512139|gb|ABJ00214.1| conserved hypothetical protein [Escherichia coli APEC O1]
 gi|190905975|gb|EDV65591.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli F11]
 gi|218364508|emb|CAR02190.1| putative AdoMet-dependent methyltransferase, UPF0004 family
           [Escherichia coli S88]
 gi|218426182|emb|CAR07004.1| putative AdoMet-dependent methyltransferase, UPF0004 family
           [Escherichia coli ED1a]
 gi|222032564|emb|CAP75303.1| UPF0004 protein yliG [Escherichia coli LF82]
 gi|226898412|gb|EEH84671.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|227838953|gb|EEJ49419.1| 2-methylthioadenine synthetase [Escherichia coli 83972]
 gi|294494144|gb|ADE92900.1| ribosomal protein S12 methylthiotransferase RimO [Escherichia coli
           IHE3034]
 gi|300297144|gb|EFJ53529.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Escherichia coli
           MS 185-1]
 gi|300305481|gb|EFJ60001.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Escherichia coli
           MS 200-1]
 gi|300406553|gb|EFJ90091.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Escherichia coli
           MS 45-1]
 gi|307552678|gb|ADN45453.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli ABU 83972]
 gi|307627756|gb|ADN72060.1| ribosomal protein S12 methylthiotransferase [Escherichia coli
           UM146]
 gi|312945352|gb|ADR26179.1| putative AdoMet-dependent methyltransferase, UPF0004 family protein
           [Escherichia coli O83:H1 str. NRG 857C]
 gi|315287333|gb|EFU46744.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli MS 110-3]
 gi|315292510|gb|EFU51862.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli MS 153-1]
 gi|323953504|gb|EGB49370.1| MiaB tRNA modifying enzyme YliG [Escherichia coli H252]
 gi|323958124|gb|EGB53833.1| MiaB tRNA modifying enzyme YliG [Escherichia coli H263]
 gi|324009731|gb|EGB78950.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Escherichia coli
           MS 57-2]
 gi|324013058|gb|EGB82277.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Escherichia coli
           MS 60-1]
 gi|331055105|gb|EGI27114.1| putative Fe-S oxidoreductase family 1 [Escherichia coli TA206]
 gi|331079974|gb|EGI51153.1| putative Fe-S oxidoreductase family 1 [Escherichia coli H299]
          Length = 441

 Score =  385 bits (990), Expect = e-105,   Method: Composition-based stats.
 Identities = 136/460 (29%), Positives = 224/460 (48%), Gaps = 35/460 (7%)

Query: 22  IVPQ-RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKV 80
           + PQ +    S GC  N+ DS R+     ++GY+ V S DDAD++++NTC   + A ++ 
Sbjct: 4   VTPQPKIGFVSLGCPKNLVDSERILTELRTEGYDVVPSYDDADMVIVNTCGFIDSAVQES 63

Query: 81  YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140
              +G              +  V+V GC+  A+ ++I    P V  + GP +Y ++ E +
Sbjct: 64  LEAIGEA---------LNENGKVIVTGCLG-AKEDQIREVHPKVLEITGPHSYEQVLEHV 113

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
                            + F  L + + G        A+L I EGC+  CTFC++P  RG
Sbjct: 114 HHY--------VPKPKHNPFLSL-VPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRG 164

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA------WRGKGLDGE--KCTFSDLLY 252
             +SR + +V+ EA++L+D GV EI ++ Q+ +A       R    +GE  K +   L  
Sbjct: 165 DLVSRPIGEVLSEAKRLVDAGVKEILVISQDTSAYGVDVKHRTGFHNGEPVKTSMVSLCE 224

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
            LS++    RL Y   +P       + A G    ++PYL +P+Q  S RILK M R  + 
Sbjct: 225 QLSKLGIWTRLHYVYPYPHVDDVIPLMAEG---KILPYLDIPLQHASPRILKLMKRPGSV 281

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
                 I + R + P++ + S FIVGFPGET++DF+  +D + +    +   FKYSP  G
Sbjct: 282 DRQLARIKQWRKICPELTLRSTFIVGFPGETEEDFQMLLDFLKEARLDRVGCFKYSPVEG 341

Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVG 430
              + + +QV E VK ER     +  ++         VG+ I V+I++  +E   G+ + 
Sbjct: 342 ADANALPDQVPEEVKEERWNRFMQLQQQISAERLQEKVGREILVIIDEVDEEGAIGRSMA 401

Query: 431 RSPWLQS-VVLNSK-NHNIGDIIKVRITDVKISTLYGELV 468
            +P +   V LN + N   GDI++V++       L+G  V
Sbjct: 402 DAPEIDGAVYLNGETNVKPGDILRVKVEHADEYDLWGSRV 441


>gi|161614891|ref|YP_001588856.1| ribosomal protein S12 methylthiotransferase [Salmonella enterica
           subsp. enterica serovar Paratyphi B str. SPB7]
 gi|238066592|sp|A9MSQ9|RIMO_SALPB RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|161364255|gb|ABX68023.1| hypothetical protein SPAB_02645 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 441

 Score =  385 bits (990), Expect = e-105,   Method: Composition-based stats.
 Identities = 130/455 (28%), Positives = 220/455 (48%), Gaps = 34/455 (7%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC  N+ DS R+     ++GY+ V   DDAD++++NTC   + A ++    +G
Sbjct: 9   KIGFVSLGCPKNLVDSERILTELRTEGYDVVPRYDDADMVIVNTCGFIDSAVQESLEAIG 68

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                         +  V+V GC+  A+ ++I    P V  + GP +Y ++ + +     
Sbjct: 69  EA---------LNENGKVIVTGCLG-AKEDQIREVHPKVLEITGPHSYEQVLQHVHHY-- 116

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                       + F  L + +          A+L I EGC+  CTFC++P  RG  +SR
Sbjct: 117 ------VPKPKHNPFLSL-VPEQDVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGDLVSR 169

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNA------WRGKGLDGE--KCTFSDLLYSLSEI 257
            +  V+ EA++L+D GV EI ++ Q+ +A       R    +GE  K +   L   LS++
Sbjct: 170 PIGDVLSEAKRLVDAGVKEILVISQDTSAYGVDVKHRTGFHNGEPVKTSMVSLCEQLSKL 229

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
               RL Y   +P       + A G    ++PYL +P+Q  S RILK M R  +      
Sbjct: 230 GVWTRLHYVYPYPHVDDVIPLMAEG---KILPYLDIPLQHASPRILKLMKRPGSVDRQLA 286

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
            I + R + P++ + S FIVGFPGET++DF+  +D + +    +   FKYSP  G   ++
Sbjct: 287 RIKQWREICPELTLRSTFIVGFPGETEEDFQMLLDFLKEARLDRVGCFKYSPVEGAGAND 346

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPWL 435
           + +QV E VK ER     +  ++         VG+ I V++++  +E   G+ +  +P +
Sbjct: 347 LPDQVPEEVKEERWNRFMQLQQQISAERLQEKVGREILVIVDEVDEEGAIGRSMADAPEI 406

Query: 436 QS-VVLNSK-NHNIGDIIKVRITDVKISTLYGELV 468
              V LN + N   GDI++V++ +     L+G  V
Sbjct: 407 DGAVYLNGETNVKPGDIVRVKVENADEYDLWGSRV 441


>gi|170769043|ref|ZP_02903496.1| MiaB-like tRNA modifying enzyme YliG [Escherichia albertii TW07627]
 gi|170122115|gb|EDS91046.1| MiaB-like tRNA modifying enzyme YliG [Escherichia albertii TW07627]
          Length = 441

 Score =  385 bits (990), Expect = e-105,   Method: Composition-based stats.
 Identities = 136/460 (29%), Positives = 224/460 (48%), Gaps = 35/460 (7%)

Query: 22  IVPQ-RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKV 80
           + PQ +    S GC  N+ DS R+     ++GY+ V S DDAD++++NTC   + A ++ 
Sbjct: 4   VTPQPKIGFVSLGCPKNLVDSERILTELRTEGYDVVPSYDDADMVIVNTCGFIDSAVQES 63

Query: 81  YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140
              +G              +  V+V GC+  A+ ++I    P V  + GP +Y ++ E +
Sbjct: 64  LEAIGEA---------LNENGKVIVTGCLG-AKEDQIREVHPKVLEITGPHSYEQVLEHV 113

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
                            + F  L + + G        A+L I EGC+  CTFC++P  RG
Sbjct: 114 HHY--------VPKPKHNPFLSL-VPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRG 164

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA------WRGKGLDGE--KCTFSDLLY 252
             +SR + +V+ EA++L+D GV EI ++ Q+ +A       R    +GE  K +   L  
Sbjct: 165 DLVSRPIGEVLSEAKRLVDAGVKEILVISQDTSAYGVDVKHRTGFHNGEPVKTSMVSLCE 224

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
            LS++    RL Y   +P       + A G    ++PYL +P+Q  S RILK M R  + 
Sbjct: 225 QLSKLGIWTRLHYVYPYPHVDDVIPLMAEG---KILPYLDIPLQHASPRILKLMKRPGSV 281

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
                 I + R + P++ + S FIVGFPGET++DF+  +D + +    +   FKYSP  G
Sbjct: 282 DRQLARIKQWREICPELTLRSTFIVGFPGETEEDFQMLLDFLKEARLDRVGCFKYSPVEG 341

Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVG 430
              + + +QV E VK ER     +  ++         VG+ I V+I++  +E   G+ + 
Sbjct: 342 ADANALPDQVPEEVKEERWNRFMQLQQQISAERLQEKVGREILVIIDEVDEEGAIGRSMA 401

Query: 431 RSPWLQS-VVLNSKNH-NIGDIIKVRITDVKISTLYGELV 468
            +P +   V LN + H   GDI++V++       L+G  V
Sbjct: 402 DAPEIDGAVYLNGETHVKPGDILRVKVEHADEYDLWGSRV 441


>gi|312084023|ref|XP_003144103.1| hypothetical protein LOAG_08525 [Loa loa]
 gi|307760732|gb|EFO19966.1| hypothetical protein LOAG_08525 [Loa loa]
          Length = 568

 Score =  385 bits (989), Expect = e-105,   Method: Composition-based stats.
 Identities = 158/472 (33%), Positives = 246/472 (52%), Gaps = 44/472 (9%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    +YGCQMNV D   +  +  S GY   + + +AD+++L TC IRE A  KV+  L 
Sbjct: 77  KVKFITYGCQMNVNDVELVRSLLLSSGYMETDDVKEADIVLLMTCSIREGAENKVWDELK 136

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +R ++          +V V GC+A+     +L  +  V+VV GP +Y  LP LL  AR 
Sbjct: 137 VLRKIRRK------KGVVGVLGCMAERVRHNLLTYTENVDVVAGPDSYRDLPRLLAIARC 190

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G   ++   S+E+ +  +  V      K   TAF++I  GCD  CT+CVVPYTRG E SR
Sbjct: 191 GSMAINVQLSLEETYADIVPVRKDKFSK---TAFVSIMRGCDNMCTYCVVPYTRGRERSR 247

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRG------------------------KGLD 241
            ++ ++DE R L D GV ++TLLGQNVN++R                         K   
Sbjct: 248 PINSILDEIRSLSDEGVKQVTLLGQNVNSYRDLSEISFPSACLTEPGTAPGFRTKYKPKK 307

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
           G + TF  LL  +S+I   +R+R+T+ HP+D    +I+   +   +   +HLP QSGS+ 
Sbjct: 308 GGR-TFLTLLDKVSQIDPEMRIRFTSPHPKDFPLEVIQLIKERSNICKQIHLPAQSGSNA 366

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
           +L +M+R ++   Y +++DRI++V P+++++SDFI GF GET++  R ++DL+  + Y+ 
Sbjct: 367 VLDAMDRGYSRESYLELVDRIKAVLPNVSLTSDFIAGFCGETEESHRESLDLIRHVVYSF 426

Query: 362 AFSFKYSPRLGTPGSN-MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
            + F YS R  T     + + V + VK  R   L    RE  +  N+A VG    VL+E+
Sbjct: 427 CYVFPYSQREKTKAYRHLKDNVSKEVKNRRHQELANVFRETALKHNEALVGTEQLVLLEE 486

Query: 421 HGKEKG-KLVGRSPWLQSVVL-----NSK---NHNIGDIIKVRITDVKISTL 463
             K     L GR     +V++     +         GD + V+IT     TL
Sbjct: 487 TSKRSSEHLRGRIDGGVNVIIHKYYNDGSELVELKPGDYVAVKITSANSQTL 538


>gi|241560240|ref|XP_002400838.1| CDK5 regulatory subunit-associated protein, putative [Ixodes
           scapularis]
 gi|215499787|gb|EEC09281.1| CDK5 regulatory subunit-associated protein, putative [Ixodes
           scapularis]
          Length = 547

 Score =  385 bits (989), Expect = e-105,   Method: Composition-based stats.
 Identities = 145/493 (29%), Positives = 247/493 (50%), Gaps = 45/493 (9%)

Query: 18  VDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA 77
            D  +  +  + ++YGCQMNV D+     +  S G+ +   ++ AD++++ TC IRE A 
Sbjct: 38  PDVRVRDRSVYFETYGCQMNVNDTEVAWSVLKSAGFTKTEDVNVADVVLIMTCAIREGAE 97

Query: 78  EKVYSFLGRIRNLKNSRIKE-GGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL 136
            K++S + +++ LK +R +   G + + + GC+A+   E+++ R   V++V GP +Y  L
Sbjct: 98  SKIWSRINQLKALKKARRRSSRGPMQIGILGCMAERLKEKLVEREKEVDIVAGPDSYRDL 157

Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
           P LL  A  G+  V+   S+++ +  +  V    N K   +A+++I  GC+  CT+C+VP
Sbjct: 158 PRLLRVATSGQVGVNVLLSLDETYADVVPVRLTENAK---SAYVSIMRGCNNMCTYCIVP 214

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD--------------- 241
           +TRG E SR ++ ++DE R L + GV E+ LLGQNVN++R    +               
Sbjct: 215 FTRGRERSRPVTSILDEVRALSEQGVKEVILLGQNVNSYRDTSAESQALIARPAPGDVLL 274

Query: 242 -----------GEKCTFSDLLYSLSEIKGLVRLRYTT-SHPRDMSDCLIKAHGDLDVLMP 289
                           F DLL  +S++   +R+R+T  ++ R     +++   D   +  
Sbjct: 275 SRGFRTVYKTQLGGVRFVDLLDRVSQVDPEMRIRFTCRANARTYGGRVLEVIQDRHNICK 334

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
            +HLP QSG+ R+L++M R +T   Y  ++  IR+  PD+A++SDFI GF GET++  R 
Sbjct: 335 QIHLPAQSGNSRVLETMRRGYTREAYLDLVAHIRTFLPDVALTSDFICGFCGETEEAHRD 394

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDA 408
           T+ LV+ + Y  A+ F YS R  T     + + V   VK  R+  +    R +    +D 
Sbjct: 395 TLSLVEAVQYDMAYVFPYSLREKTHAHRRLEDDVPLEVKKRRVAEVLAVFRRRVKQLHDK 454

Query: 409 CVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN------------SKNHNIGDIIKVRI 455
            VG +  VL+E   +     L GR+     V+               +    GD + V I
Sbjct: 455 QVGSLQLVLVEGVSRRSAADLAGRNDNNTKVIFPQSLIPESSGSTVRREVQPGDYVVVEI 514

Query: 456 TDVKISTLYGELV 468
            D     L G  +
Sbjct: 515 NDCTSQVLKGTPI 527


>gi|212704632|ref|ZP_03312760.1| hypothetical protein DESPIG_02695 [Desulfovibrio piger ATCC 29098]
 gi|212672031|gb|EEB32514.1| hypothetical protein DESPIG_02695 [Desulfovibrio piger ATCC 29098]
          Length = 448

 Score =  385 bits (989), Expect = e-105,   Method: Composition-based stats.
 Identities = 168/453 (37%), Positives = 254/453 (56%), Gaps = 19/453 (4%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           ++   F + ++GCQMNV+DS  +     ++G+     +++A ++V+NTC +REK  +KV 
Sbjct: 1   MIDNSFHIITFGCQMNVHDSQWLARALEARGFCEAP-LEEARVVVVNTCSVREKPEQKVM 59

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S LGRIR +  +       +LV V GCVAQ  GE++  R   V +V G       P+ +E
Sbjct: 60  STLGRIRQVTGNS----PRVLVAVTGCVAQQLGEKLFSR--QVRLVAGSDGISGAPQAIE 113

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           R      +     S+ D        + G +       F+ I +GCD FC +C+VPYTRG 
Sbjct: 114 RLLDEPALR---LSLLDFTSHYVEREPGADTPSAPVGFVNIMQGCDNFCAYCIVPYTRGR 170

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           + SR    ++DE R L+D G  EITLLGQNVNA+ G+   G+  +F+ LL  ++ + GL 
Sbjct: 171 QKSRLTPAILDECRHLLDRGAHEITLLGQNVNAF-GRDTHGDGVSFATLLEKVAALPGLK 229

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           RLRY T HP+DM    ++A  D+  L P LHLP+Q+GSD +LK M R++ +  Y +++  
Sbjct: 230 RLRYVTPHPKDMGPEDVRAFADIPQLCPRLHLPLQAGSDAVLKRMGRKYDSVRYLELVAS 289

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R  RPDIA+S+D IVGFPGET++DF AT++L+    +  +FSF YS R GT  S  L++
Sbjct: 290 LRDARPDIALSTDLIVGFPGETEEDFAATLELMRASDFMSSFSFCYSDRPGTRASRFLDK 349

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-------LVGRSPW 434
           +  +V+ +RLL LQ    E    + DA VGQ  EVL+E   + +           GR  +
Sbjct: 350 IAPDVQQDRLLRLQALQEELSQRWLDARVGQECEVLLENASRREATADDSLQSWQGRDIY 409

Query: 435 LQSVVLN-SKNHNIGDIIKVRITDVKISTLYGE 466
              V +      + G ++  RI + K  +L  E
Sbjct: 410 GALVHVPLPAGDHTGRLVNARIVEAKKHSLVAE 442


>gi|15800587|ref|NP_286601.1| hypothetical protein Z1061 [Escherichia coli O157:H7 EDL933]
 gi|15830169|ref|NP_308942.1| ribosomal protein S12 methylthiotransferase [Escherichia coli
           O157:H7 str. Sakai]
 gi|16128803|ref|NP_415356.1| ribosomal protein S12 methylthiotransferase; radical SAM
           superfamily [Escherichia coli str. K-12 substr. MG1655]
 gi|82543282|ref|YP_407229.1| ribosomal protein S12 methylthiotransferase [Shigella boydii Sb227]
 gi|89107686|ref|AP_001466.1| predicted SAM-dependent methyltransferase [Escherichia coli str.
           K-12 substr. W3110]
 gi|157156507|ref|YP_001462031.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli E24377A]
 gi|157160316|ref|YP_001457634.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli HS]
 gi|168750019|ref|ZP_02775041.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli O157:H7 str.
           EC4113]
 gi|168756629|ref|ZP_02781636.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli O157:H7 str.
           EC4401]
 gi|168763315|ref|ZP_02788322.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli O157:H7 str.
           EC4501]
 gi|168767345|ref|ZP_02792352.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli O157:H7 str.
           EC4486]
 gi|168776376|ref|ZP_02801383.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli O157:H7 str.
           EC4196]
 gi|168779387|ref|ZP_02804394.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli O157:H7 str.
           EC4076]
 gi|168787056|ref|ZP_02812063.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli O157:H7 str.
           EC869]
 gi|168799883|ref|ZP_02824890.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli O157:H7 str.
           EC508]
 gi|170020808|ref|YP_001725762.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli ATCC 8739]
 gi|170080494|ref|YP_001729814.1| SAM-dependent methyltransferase [Escherichia coli str. K-12 substr.
           DH10B]
 gi|170679937|ref|YP_001742942.1| ribosomal protein S12 methylthiotransferase [Escherichia coli
           SMS-3-5]
 gi|188491719|ref|ZP_02998989.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli 53638]
 gi|193064469|ref|ZP_03045550.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli E22]
 gi|193069349|ref|ZP_03050304.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli E110019]
 gi|194428238|ref|ZP_03060781.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli B171]
 gi|194438397|ref|ZP_03070487.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli 101-1]
 gi|195936880|ref|ZP_03082262.1| SAM-dependent methyltransferase [Escherichia coli O157:H7 str.
           EC4024]
 gi|208809462|ref|ZP_03251799.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli O157:H7 str.
           EC4206]
 gi|208815511|ref|ZP_03256690.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli O157:H7 str.
           EC4045]
 gi|208822008|ref|ZP_03262327.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli O157:H7 str.
           EC4042]
 gi|209397285|ref|YP_002269504.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli O157:H7 str.
           EC4115]
 gi|209918084|ref|YP_002292168.1| ribosomal protein S12 methylthiotransferase [Escherichia coli SE11]
 gi|215485921|ref|YP_002328352.1| predicted SAM-dependent methyltransferase [Escherichia coli O127:H6
           str. E2348/69]
 gi|217324506|ref|ZP_03440590.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli O157:H7 str.
           TW14588]
 gi|218553421|ref|YP_002386334.1| ribosomal protein S12 methylthiotransferase [Escherichia coli IAI1]
 gi|218694309|ref|YP_002401976.1| putative AdoMet-dependent methyltransferase, UPF0004 family
           [Escherichia coli 55989]
 gi|218699210|ref|YP_002406839.1| ribosomal protein S12 methylthiotransferase [Escherichia coli
           IAI39]
 gi|218704259|ref|YP_002411778.1| ribosomal protein S12 methylthiotransferase [Escherichia coli
           UMN026]
 gi|238900094|ref|YP_002925890.1| putative SAM-dependent methyltransferase [Escherichia coli BW2952]
 gi|253774163|ref|YP_003036994.1| ribosomal protein S12 methylthiotransferase [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254792031|ref|YP_003076868.1| ribosomal protein S12 methylthiotransferase [Escherichia coli
           O157:H7 str. TW14359]
 gi|256021094|ref|ZP_05434959.1| predicted SAM-dependent methyltransferase [Shigella sp. D9]
 gi|256023569|ref|ZP_05437434.1| predicted SAM-dependent methyltransferase [Escherichia sp. 4_1_40B]
 gi|260843086|ref|YP_003220864.1| putative SAM-dependent methyltransferase [Escherichia coli O103:H2
           str. 12009]
 gi|260854127|ref|YP_003228018.1| putative SAM-dependent methyltransferase [Escherichia coli O26:H11
           str. 11368]
 gi|260867009|ref|YP_003233411.1| putative SAM-dependent methyltransferase [Escherichia coli O111:H-
           str. 11128]
 gi|261225485|ref|ZP_05939766.1| predicted SAM-dependent methyltransferase [Escherichia coli O157:H7
           str. FRIK2000]
 gi|261258546|ref|ZP_05951079.1| putative SAM-dependent methyltransferase [Escherichia coli O157:H7
           str. FRIK966]
 gi|293404140|ref|ZP_06648134.1| ribosomal protein S12 methylthiotransferase rimO [Escherichia coli
           FVEC1412]
 gi|293409210|ref|ZP_06652786.1| MiaB tRNA modifying enzyme YliG [Escherichia coli B354]
 gi|293414112|ref|ZP_06656761.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli B185]
 gi|293433133|ref|ZP_06661561.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli B088]
 gi|297519256|ref|ZP_06937642.1| ribosomal protein S12 methylthiotransferase [Escherichia coli OP50]
 gi|298379921|ref|ZP_06989526.1| ribosomal protein S12 methylthiotransferase rimO [Escherichia coli
           FVEC1302]
 gi|300817104|ref|ZP_07097323.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli MS 107-1]
 gi|300823976|ref|ZP_07104098.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli MS 119-7]
 gi|300895750|ref|ZP_07114343.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Escherichia coli
           MS 198-1]
 gi|300907167|ref|ZP_07124830.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli MS 84-1]
 gi|300916314|ref|ZP_07133061.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Escherichia coli
           MS 115-1]
 gi|300924443|ref|ZP_07140413.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Escherichia coli
           MS 182-1]
 gi|300929357|ref|ZP_07144830.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Escherichia coli
           MS 187-1]
 gi|300939879|ref|ZP_07154514.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Escherichia coli
           MS 21-1]
 gi|300947075|ref|ZP_07161296.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Escherichia coli
           MS 116-1]
 gi|300957038|ref|ZP_07169284.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Escherichia coli
           MS 175-1]
 gi|301020653|ref|ZP_07184726.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Escherichia coli
           MS 69-1]
 gi|301027025|ref|ZP_07190406.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Escherichia coli
           MS 196-1]
 gi|301303594|ref|ZP_07209716.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli MS 124-1]
 gi|301325843|ref|ZP_07219276.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Escherichia coli
           MS 78-1]
 gi|301646272|ref|ZP_07246163.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Escherichia coli
           MS 146-1]
 gi|306812763|ref|ZP_07446956.1| putative SAM-dependent methyltransferase [Escherichia coli NC101]
 gi|307137463|ref|ZP_07496819.1| ribosomal protein S12 methylthiotransferase [Escherichia coli H736]
 gi|307314528|ref|ZP_07594131.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli W]
 gi|309795418|ref|ZP_07689836.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli MS 145-7]
 gi|312969142|ref|ZP_07783349.1| RNA modification enzyme, MiaB family protein [Escherichia coli
           2362-75]
 gi|312970914|ref|ZP_07785093.1| RNA modification enzyme, MiaB family protein [Escherichia coli
           1827-70]
 gi|331641355|ref|ZP_08342490.1| putative Fe-S oxidoreductase family 1 [Escherichia coli H736]
 gi|331646054|ref|ZP_08347157.1| putative Fe-S oxidoreductase family 1 [Escherichia coli M605]
 gi|331651848|ref|ZP_08352867.1| putative Fe-S oxidoreductase family 1 [Escherichia coli M718]
 gi|331662196|ref|ZP_08363119.1| putative Fe-S oxidoreductase family 1 [Escherichia coli TA143]
 gi|331667207|ref|ZP_08368072.1| putative Fe-S oxidoreductase family 1 [Escherichia coli TA271]
 gi|331676574|ref|ZP_08377270.1| putative Fe-S oxidoreductase family 1 [Escherichia coli H591]
 gi|332282318|ref|ZP_08394731.1| conserved hypothetical protein [Shigella sp. D9]
 gi|83288204|sp|P0AEI5|RIMO_ECO57 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|83288205|sp|P0AEI4|RIMO_ECOLI RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|123742019|sp|Q323V7|RIMO_SHIBS RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|238065339|sp|A7ZJQ2|RIMO_ECO24 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|238065341|sp|B7LCB8|RIMO_ECO55 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|238065342|sp|B5YSC6|RIMO_ECO5E RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|238065343|sp|B7NNR8|RIMO_ECO7I RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|238065345|sp|B7M7B0|RIMO_ECO8A RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|238065346|sp|B1X7X6|RIMO_ECODH RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|238065347|sp|A7ZY97|RIMO_ECOHS RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|238065349|sp|B1IXD2|RIMO_ECOLC RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|238065350|sp|B7NAI1|RIMO_ECOLU RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|238065351|sp|B6I8F5|RIMO_ECOSE RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|238065352|sp|B1LMD0|RIMO_ECOSM RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|12513847|gb|AAG55211.1|AE005265_1 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933]
 gi|1787057|gb|AAC73922.1| ribosomal protein S12 methylthiotransferase; radical SAM
           superfamily [Escherichia coli str. K-12 substr. MG1655]
 gi|4062412|dbj|BAA35530.1| predicted SAM-dependent methyltransferase [Escherichia coli str.
           K12 substr. W3110]
 gi|13360374|dbj|BAB34338.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
 gi|81244693|gb|ABB65401.1| conserved hypothetical protein [Shigella boydii Sb227]
 gi|157065996|gb|ABV05251.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli HS]
 gi|157078537|gb|ABV18245.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli E24377A]
 gi|169755736|gb|ACA78435.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli ATCC 8739]
 gi|169888329|gb|ACB02036.1| predicted SAM-dependent methyltransferase [Escherichia coli str.
           K-12 substr. DH10B]
 gi|170517655|gb|ACB15833.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli SMS-3-5]
 gi|187768242|gb|EDU32086.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli O157:H7 str.
           EC4196]
 gi|188015693|gb|EDU53815.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli O157:H7 str.
           EC4113]
 gi|188486918|gb|EDU62021.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli 53638]
 gi|189003096|gb|EDU72082.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli O157:H7 str.
           EC4076]
 gi|189356288|gb|EDU74707.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli O157:H7 str.
           EC4401]
 gi|189363546|gb|EDU81965.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli O157:H7 str.
           EC4486]
 gi|189366506|gb|EDU84922.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli O157:H7 str.
           EC4501]
 gi|189373003|gb|EDU91419.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli O157:H7 str.
           EC869]
 gi|189377794|gb|EDU96210.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli O157:H7 str.
           EC508]
 gi|192928931|gb|EDV82544.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli E22]
 gi|192957302|gb|EDV87750.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli E110019]
 gi|194413798|gb|EDX30077.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli B171]
 gi|194422621|gb|EDX38618.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli 101-1]
 gi|208729263|gb|EDZ78864.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli O157:H7 str.
           EC4206]
 gi|208732159|gb|EDZ80847.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli O157:H7 str.
           EC4045]
 gi|208737493|gb|EDZ85176.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli O157:H7 str.
           EC4042]
 gi|209158685|gb|ACI36118.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli O157:H7 str.
           EC4115]
 gi|209775578|gb|ACI86101.1| hypothetical protein ECs0915 [Escherichia coli]
 gi|209775580|gb|ACI86102.1| hypothetical protein ECs0915 [Escherichia coli]
 gi|209775582|gb|ACI86103.1| hypothetical protein ECs0915 [Escherichia coli]
 gi|209775586|gb|ACI86105.1| hypothetical protein ECs0915 [Escherichia coli]
 gi|209911343|dbj|BAG76417.1| conserved hypothetical protein [Escherichia coli SE11]
 gi|215263993|emb|CAS08334.1| predicted SAM-dependent methyltransferase [Escherichia coli O127:H6
           str. E2348/69]
 gi|217320727|gb|EEC29151.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli O157:H7 str.
           TW14588]
 gi|218351041|emb|CAU96745.1| putative AdoMet-dependent methyltransferase, UPF0004 family
           [Escherichia coli 55989]
 gi|218360189|emb|CAQ97739.1| putative AdoMet-dependent methyltransferase, UPF0004 family
           [Escherichia coli IAI1]
 gi|218369196|emb|CAR16951.1| putative AdoMet-dependent methyltransferase, UPF0004 family
           [Escherichia coli IAI39]
 gi|218431356|emb|CAR12234.1| putative AdoMet-dependent methyltransferase, UPF0004 family
           [Escherichia coli UMN026]
 gi|238863092|gb|ACR65090.1| predicted SAM-dependent methyltransferase [Escherichia coli BW2952]
 gi|242376626|emb|CAQ31336.1| ribosomal protein S12 D88 methylthiotransferase [Escherichia coli
           BL21(DE3)]
 gi|253325207|gb|ACT29809.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253977033|gb|ACT42703.1| predicted SAM-dependent methyltransferase [Escherichia coli
           BL21(DE3)]
 gi|254591431|gb|ACT70792.1| predicted SAM-dependent methyltransferase [Escherichia coli O157:H7
           str. TW14359]
 gi|257752776|dbj|BAI24278.1| predicted SAM-dependent methyltransferase [Escherichia coli O26:H11
           str. 11368]
 gi|257758233|dbj|BAI29730.1| predicted SAM-dependent methyltransferase [Escherichia coli O103:H2
           str. 12009]
 gi|257763365|dbj|BAI34860.1| predicted SAM-dependent methyltransferase [Escherichia coli O111:H-
           str. 11128]
 gi|260450018|gb|ACX40440.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli DH1]
 gi|281177970|dbj|BAI54300.1| conserved hypothetical protein [Escherichia coli SE15]
 gi|284920688|emb|CBG33751.1| radical SAM superfamily protein [Escherichia coli 042]
 gi|291323952|gb|EFE63374.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli B088]
 gi|291428726|gb|EFF01751.1| ribosomal protein S12 methylthiotransferase rimO [Escherichia coli
           FVEC1412]
 gi|291434170|gb|EFF07143.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli B185]
 gi|291469678|gb|EFF12162.1| MiaB tRNA modifying enzyme YliG [Escherichia coli B354]
 gi|298279619|gb|EFI21127.1| ribosomal protein S12 methylthiotransferase rimO [Escherichia coli
           FVEC1302]
 gi|299879453|gb|EFI87664.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Escherichia coli
           MS 196-1]
 gi|300316178|gb|EFJ65962.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Escherichia coli
           MS 175-1]
 gi|300360324|gb|EFJ76194.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Escherichia coli
           MS 198-1]
 gi|300398581|gb|EFJ82119.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Escherichia coli
           MS 69-1]
 gi|300401042|gb|EFJ84580.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli MS 84-1]
 gi|300416403|gb|EFJ99713.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Escherichia coli
           MS 115-1]
 gi|300419328|gb|EFK02639.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Escherichia coli
           MS 182-1]
 gi|300453314|gb|EFK16934.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Escherichia coli
           MS 116-1]
 gi|300455261|gb|EFK18754.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Escherichia coli
           MS 21-1]
 gi|300462703|gb|EFK26196.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Escherichia coli
           MS 187-1]
 gi|300523487|gb|EFK44556.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli MS 119-7]
 gi|300530456|gb|EFK51518.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli MS 107-1]
 gi|300841093|gb|EFK68853.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli MS 124-1]
 gi|300847357|gb|EFK75117.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Escherichia coli
           MS 78-1]
 gi|301075475|gb|EFK90281.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Escherichia coli
           MS 146-1]
 gi|305853526|gb|EFM53965.1| putative SAM-dependent methyltransferase [Escherichia coli NC101]
 gi|306905951|gb|EFN36473.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli W]
 gi|308121068|gb|EFO58330.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli MS 145-7]
 gi|309701113|emb|CBJ00411.1| radical SAM superfamily protein [Escherichia coli ETEC H10407]
 gi|310336675|gb|EFQ01842.1| RNA modification enzyme, MiaB family protein [Escherichia coli
           1827-70]
 gi|312286544|gb|EFR14457.1| RNA modification enzyme, MiaB family protein [Escherichia coli
           2362-75]
 gi|315060073|gb|ADT74400.1| predicted SAM-dependent methyltransferase [Escherichia coli W]
 gi|315135484|dbj|BAJ42643.1| ribosomal protein S12 methylthiotransferase rimO [Escherichia coli
           DH1]
 gi|315257824|gb|EFU37792.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli MS 85-1]
 gi|315619839|gb|EFV00358.1| RNA modification enzyme, MiaB family protein [Escherichia coli
           3431]
 gi|320186091|gb|EFW60835.1| hypothetical protein SGF_01691 [Shigella flexneri CDC 796-83]
 gi|320192686|gb|EFW67327.1| hypothetical protein ECoD_00613 [Escherichia coli O157:H7 str.
           EC1212]
 gi|320196670|gb|EFW71293.1| hypothetical protein EcoM_01211 [Escherichia coli WV_060327]
 gi|320199026|gb|EFW73623.1| hypothetical protein ECoL_03723 [Escherichia coli EC4100B]
 gi|320637701|gb|EFX07493.1| ribosomal protein S12 methylthiotransferase [Escherichia coli
           O157:H7 str. G5101]
 gi|320642825|gb|EFX12026.1| ribosomal protein S12 methylthiotransferase [Escherichia coli
           O157:H- str. 493-89]
 gi|320648282|gb|EFX16937.1| ribosomal protein S12 methylthiotransferase [Escherichia coli
           O157:H- str. H 2687]
 gi|320654119|gb|EFX22187.1| ribosomal protein S12 methylthiotransferase [Escherichia coli
           O55:H7 str. 3256-97 TW 07815]
 gi|320664213|gb|EFX31364.1| ribosomal protein S12 methylthiotransferase [Escherichia coli
           O157:H7 str. LSU-61]
 gi|323155793|gb|EFZ41962.1| RNA modification enzyme, MiaB family protein [Escherichia coli
           EPECa14]
 gi|323159657|gb|EFZ45636.1| RNA modification enzyme, MiaB family protein [Escherichia coli
           E128010]
 gi|323172246|gb|EFZ57884.1| RNA modification enzyme, MiaB family protein [Escherichia coli
           LT-68]
 gi|323175544|gb|EFZ61139.1| RNA modification enzyme, MiaB family protein [Escherichia coli
           1180]
 gi|323185248|gb|EFZ70613.1| RNA modification enzyme, MiaB family protein [Escherichia coli
           1357]
 gi|323379369|gb|ADX51637.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli KO11]
 gi|323938190|gb|EGB34450.1| MiaB tRNA modifying enzyme YliG [Escherichia coli E1520]
 gi|323942707|gb|EGB38872.1| MiaB tRNA modifying enzyme YliG [Escherichia coli E482]
 gi|323947141|gb|EGB43152.1| MiaB tRNA modifying enzyme YliG [Escherichia coli H120]
 gi|323962948|gb|EGB58520.1| MiaB tRNA modifying enzyme YliG [Escherichia coli H489]
 gi|323967270|gb|EGB62693.1| MiaB tRNA modifying enzyme YliG [Escherichia coli M863]
 gi|323969601|gb|EGB64889.1| MiaB tRNA modifying enzyme YliG [Escherichia coli TA007]
 gi|323976780|gb|EGB71868.1| MiaB tRNA modifying enzyme YliG [Escherichia coli TW10509]
 gi|324015967|gb|EGB85186.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Escherichia coli
           MS 117-3]
 gi|324116148|gb|EGC10071.1| MiaB tRNA modifying enzyme YliG [Escherichia coli E1167]
 gi|326338276|gb|EGD62105.1| hypothetical protein ECF_05227 [Escherichia coli O157:H7 str. 1125]
 gi|326346253|gb|EGD69991.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli O157:H7 str.
           1044]
 gi|327253622|gb|EGE65251.1| RNA modification enzyme, MiaB family protein [Escherichia coli
           STEC_7v]
 gi|330910577|gb|EGH39087.1| ribosomal protein S12p Asp88 methylthiotransferase [Escherichia
           coli AA86]
 gi|331038153|gb|EGI10373.1| putative Fe-S oxidoreductase family 1 [Escherichia coli H736]
 gi|331044806|gb|EGI16933.1| putative Fe-S oxidoreductase family 1 [Escherichia coli M605]
 gi|331050126|gb|EGI22184.1| putative Fe-S oxidoreductase family 1 [Escherichia coli M718]
 gi|331060618|gb|EGI32582.1| putative Fe-S oxidoreductase family 1 [Escherichia coli TA143]
 gi|331065563|gb|EGI37456.1| putative Fe-S oxidoreductase family 1 [Escherichia coli TA271]
 gi|331075263|gb|EGI46561.1| putative Fe-S oxidoreductase family 1 [Escherichia coli H591]
 gi|332088907|gb|EGI94019.1| RNA modification enzyme, MiaB family protein [Shigella boydii
           5216-82]
 gi|332097419|gb|EGJ02399.1| RNA modification enzyme, MiaB family protein [Shigella boydii
           3594-74]
 gi|332104670|gb|EGJ08016.1| conserved hypothetical protein [Shigella sp. D9]
 gi|332342168|gb|AEE55502.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli UMNK88]
          Length = 441

 Score =  385 bits (989), Expect = e-105,   Method: Composition-based stats.
 Identities = 136/460 (29%), Positives = 224/460 (48%), Gaps = 35/460 (7%)

Query: 22  IVPQ-RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKV 80
           + PQ +    S GC  N+ DS R+     ++GY+ V S DDAD++++NTC   + A ++ 
Sbjct: 4   VTPQPKIGFVSLGCPKNLVDSERILTELRTEGYDVVPSYDDADMVIVNTCGFIDSAVQES 63

Query: 81  YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140
              +G              +  V+V GC+  A+ ++I    P V  + GP +Y ++ E +
Sbjct: 64  LEAIGEA---------LNENGKVIVTGCLG-AKEDQIREVHPKVLEITGPHSYEQVLEHV 113

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
                            + F  L + + G        A+L I EGC+  CTFC++P  RG
Sbjct: 114 HHY--------VPKPKHNPFLSL-VPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRG 164

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA------WRGKGLDGE--KCTFSDLLY 252
             +SR + +V+ EA++L+D GV EI ++ Q+ +A       R    +GE  K +   L  
Sbjct: 165 DLVSRPIGEVLSEAKRLVDAGVKEILVISQDTSAYGVDVKHRTGFHNGEPVKTSMVSLCE 224

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
            LS++    RL Y   +P       + A G    ++PYL +P+Q  S RILK M R  + 
Sbjct: 225 QLSKLGIWTRLHYVYPYPHVDDVIPLMAEG---KILPYLDIPLQHASPRILKLMKRPGSV 281

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
                 I + R + P++ + S FIVGFPGET++DF+  +D + +    +   FKYSP  G
Sbjct: 282 DRQLARIKQWREICPELTLRSTFIVGFPGETEEDFQMLLDFLKEARLDRVGCFKYSPVEG 341

Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVG 430
              + + +QV E VK ER     +  ++         VG+ I V+I++  +E   G+ + 
Sbjct: 342 ADANALPDQVPEEVKEERWNRFMQLQQQISAERLQEKVGREILVIIDEVDEEGAIGRSMA 401

Query: 431 RSPWLQS-VVLNSK-NHNIGDIIKVRITDVKISTLYGELV 468
            +P +   V LN + N   GDI++V++       L+G  V
Sbjct: 402 DAPEIDGAVYLNGETNVKPGDILRVKVEHADEYDLWGSRV 441


>gi|262340984|ref|YP_003283839.1| MiaB family tRNA modification enzyme: 2-methylthioadenine
           synthetase [Blattabacterium sp. (Blattella germanica)
           str. Bge]
 gi|262272321|gb|ACY40229.1| MiaB family tRNA modification enzyme: 2-methylthioadenine
           synthetase [Blattabacterium sp. (Blattella germanica)
           str. Bge]
          Length = 453

 Score =  385 bits (989), Expect = e-105,   Method: Composition-based stats.
 Identities = 149/457 (32%), Positives = 257/457 (56%), Gaps = 12/457 (2%)

Query: 13  MVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHI 72
           M+ +  +Q  + Q F++++YGCQMN+ DS  +  +  + G+   N+++ AD+I+ N+C I
Sbjct: 1   MMEKNKNQKKLNQSFYIENYGCQMNLSDSEIVISILSNDGFVLSNNLEKADIILFNSCSI 60

Query: 73  REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT 132
           REKA   +   L +++ L     K+    L  V GC+++      L     ++  V P +
Sbjct: 61  REKAELTLKKRLEQLQFL-----KKKKKTLFGVIGCLSKKIIN-FLIEEKKIDFFVNPNS 114

Query: 133 YYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTF 192
           Y ++ + +  A  GK+ +  ++   + +  +      Y  ++ VT FL+I  GCD  CTF
Sbjct: 115 YKKISDFIRYAMDGKKSLHLNHQKNETYSDIQP---FYLNQKKVTTFLSITRGCDNMCTF 171

Query: 193 CVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLY 252
           C+VP+TRG E S S   ++++ + L  NG  EITLLGQNV+++R          FS+LL 
Sbjct: 172 CIVPFTRGRERSSSPYSIIEQCKHLYQNGYKEITLLGQNVDSYRWS-KGFITIGFSELLN 230

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
            L+     +R+R++TS+P DMSD +++       +  ++HLPVQSGS++IL+ MNR++T 
Sbjct: 231 LLALEIPSMRIRFSTSNPHDMSDKVLEIISKHPNICKHIHLPVQSGSNKILRLMNRKYTR 290

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
            +Y  +++RIR++ P+ +IS D + GF  E + D + T+DL++KI Y   + F YSPR G
Sbjct: 291 EKYLSLVNRIRTIIPECSISHDIMTGFCNEEEKDHQDTIDLMNKIQYNYGYMFSYSPRPG 350

Query: 373 TPGSN-MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVG 430
           T     + + V ++VK +RL  +    R          +G++ E+LIE   K+      G
Sbjct: 351 TYAYRNLQDNVPKDVKKKRLKEIIDLQRNHSSFRMKEYLGKVQEILIEGESKKNCQYWYG 410

Query: 431 RSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
           R+     VV   +++ IGD   ++IT+   +TL G++
Sbjct: 411 RNTQNLVVVFPKQSYKIGDFTHIQITETTSATLIGKI 447


>gi|187730809|ref|YP_001880977.1| ribosomal protein S12 methylthiotransferase [Shigella boydii CDC
           3083-94]
 gi|238066604|sp|B2TV93|RIMO_SHIB3 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|187427801|gb|ACD07075.1| MiaB-like tRNA modifying enzyme YliG [Shigella boydii CDC 3083-94]
          Length = 441

 Score =  385 bits (989), Expect = e-105,   Method: Composition-based stats.
 Identities = 135/460 (29%), Positives = 224/460 (48%), Gaps = 35/460 (7%)

Query: 22  IVPQ-RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKV 80
           + PQ +    S GC  N+ DS R+     ++GY+ V S DDAD++++NTC   + A ++ 
Sbjct: 4   VTPQPKIGFVSLGCPKNLVDSERILTELRTEGYDVVPSYDDADMVIVNTCGFIDSAVQES 63

Query: 81  YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140
              +G              +  V+V GC+  A+ ++I    P V  + GP +Y ++ E +
Sbjct: 64  LEAIGEA---------LNENGKVIVTGCLG-AKEDQIREVHPKVLEITGPHSYEQVLEHV 113

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
                            + F  L + + G        A+L I EGC+  CTFC++P  RG
Sbjct: 114 HHY--------VPKPKHNPFLSL-VPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRG 164

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA------WRGKGLDGE--KCTFSDLLY 252
             +SR + +V+ EA++L+D GV EI ++ Q+ +A       R    +G+  K +   L  
Sbjct: 165 DLVSRPIGEVLSEAKRLVDAGVKEILVISQDTSAYGVDVKHRTGFHNGKPVKTSMVSLCE 224

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
            LS++    RL Y   +P       + A G    ++PYL +P+Q  S RILK M R  + 
Sbjct: 225 QLSKLGIWTRLHYVYPYPHVDDVIPLMAEG---KILPYLDIPLQHASPRILKLMKRPGSV 281

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
                 I + R + P++ + S FIVGFPGET++DF+  +D + +    +   FKYSP  G
Sbjct: 282 DRQLARIKQWREICPELTLRSTFIVGFPGETEEDFQMLLDFLKEARLDRVGCFKYSPVEG 341

Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVG 430
              + + +QV E VK ER     +  ++         VG+ I V+I++  +E   G+ + 
Sbjct: 342 ADANALPDQVPEEVKEERWNRFMQLQQQISAERLQEKVGREILVIIDEVDEEGAIGRSMA 401

Query: 431 RSPWLQS-VVLNSK-NHNIGDIIKVRITDVKISTLYGELV 468
            +P +   V LN + N   GDI++V++       L+G  V
Sbjct: 402 DAPEIDGAVYLNGETNVKPGDILRVKVEHADEYDLWGSRV 441


>gi|229521686|ref|ZP_04411104.1| ribosomal protein S12p Asp88 methylthiotransferase [Vibrio cholerae
           TM 11079-80]
 gi|229341280|gb|EEO06284.1| ribosomal protein S12p Asp88 methylthiotransferase [Vibrio cholerae
           TM 11079-80]
          Length = 470

 Score =  385 bits (989), Expect = e-105,   Method: Composition-based stats.
 Identities = 130/469 (27%), Positives = 218/469 (46%), Gaps = 36/469 (7%)

Query: 13  MVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHI 72
           +  Q  +      +    S GC  N+ DS R+     ++GYE VNS  D+D++++NTC  
Sbjct: 21  IAEQSQNSQTTGNKIGFVSLGCPKNLVDSERILTQLRTEGYEIVNSYHDSDVVIVNTCGF 80

Query: 73  REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT 132
            + A ++    +G    LK +         V+V GC+   E +EI +  P V  + GP  
Sbjct: 81  IDSAVQESLDTIGEA--LKENGK-------VIVTGCLGARE-DEIRQVHPNVLGITGPHA 130

Query: 133 YYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTF 192
           Y  + E + +               + F  L + D G        A+L I EGC+  CTF
Sbjct: 131 YQNVLEHVHQY--------APKPAHNPFTSL-VPDHGVKLTPKHYAYLKISEGCNHRCTF 181

Query: 193 CVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE--------- 243
           C++P  RG  +SR + +++ EA +L + GV E+ ++ Q+ +A  G               
Sbjct: 182 CIIPSMRGDLVSRPVGEIIGEAERLKNAGVKELLVISQDTSA-YGVDTKHSLGFANGSPV 240

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
           +     L   L ++   VRL Y   +P       + A G    ++PYL +P Q  S R+L
Sbjct: 241 RHNIKALSEELGKMGIWVRLHYVYPYPHVDEIIPLMAEG---KVLPYLDIPFQHASPRVL 297

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           K M R   A    + I + R + P++ I S FIVGFPGET++DF+  +D + +    +  
Sbjct: 298 KMMKRPGQAERTLERIKKWREICPELVIRSTFIVGFPGETEEDFQILLDWLKEAQLDRVG 357

Query: 364 SFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK 423
            FKYSP  G   + + EQ+ E+VK +R        +E   +     +G  ++VL+++  +
Sbjct: 358 CFKYSPVEGAAANEIEEQIPEDVKQDRFERFMLVQQEISAAKLQKRIGSTMQVLVDEVDE 417

Query: 424 EK--GKLVGRSPWLQS-VVLNSK-NHNIGDIIKVRITDVKISTLYGELV 468
           E   G+    +P +   V LN + N   G+++ V I       L+G ++
Sbjct: 418 EGAIGRTYADAPEIDGLVYLNGETNLKPGELVNVVIEHADEYDLWGSVL 466


>gi|320173893|gb|EFW49071.1| hypothetical protein SDB_03579 [Shigella dysenteriae CDC 74-1112]
          Length = 441

 Score =  385 bits (989), Expect = e-105,   Method: Composition-based stats.
 Identities = 137/460 (29%), Positives = 225/460 (48%), Gaps = 35/460 (7%)

Query: 22  IVPQ-RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKV 80
           + PQ +    S GC  N+ DS R+     ++GY+ V S DDAD++++NTC   + A ++ 
Sbjct: 4   VTPQPKIGFVSLGCPKNLVDSERILTELRTEGYDVVPSYDDADMVIVNTCGFIDSAVQES 63

Query: 81  YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140
              +G              +  V+V GC+  A+ ++I    P V  + GP +Y ++ E +
Sbjct: 64  LEAIGEA---------LNENGKVIVTGCLG-AKEDQIREVHPKVLEITGPHSYEQVLEHV 113

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
                            + F  L + + G        A+L I EGC+  CTFC++P  RG
Sbjct: 114 HHY--------VPKPKHNPFLSL-VPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRG 164

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA------WRGKGLDGE--KCTFSDLLY 252
             +SR + +V+ EA++L+D GV EI ++ Q+ +A       R    +GE  K +   L  
Sbjct: 165 DLVSRPIGEVLSEAKRLVDAGVKEILVISQDTSAYGVDVKHRTGFHNGEPVKTSMVSLCE 224

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
            LS++    RL Y   +P       + A G    ++PYL +P+Q  S RILK M R  + 
Sbjct: 225 QLSKLGIWTRLHYVYPYPHVDDVIPLMAEG---KILPYLDIPLQHASPRILKLMKRPGSV 281

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
                 I + R + P++ + S FIVGFPGET++DF+  +D + +    +   FKYSP  G
Sbjct: 282 DRQLARIKQWREICPELTLRSTFIVGFPGETEEDFQMLLDFLKEARLDRVGCFKYSPVEG 341

Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVG 430
              + + +QV E VK ER     +  ++         VG+ I V+I++  +E   G+ + 
Sbjct: 342 ADANALPDQVPEEVKEERWNRFMQLQQQISAERLQEKVGREILVIIDEVDEEGAIGRSMA 401

Query: 431 RSPWLQS-VVLNSK-NHNIGDIIKVRITDVKISTLYGELV 468
            +P +   V LN + N N GDI++V++       L+G  V
Sbjct: 402 DAPEIDGAVYLNGETNVNPGDILRVKVEHADEYDLWGSRV 441


>gi|300770675|ref|ZP_07080554.1| MiaB family RNA modification enzyme [Sphingobacterium spiritivorum
           ATCC 33861]
 gi|300763151|gb|EFK59968.1| MiaB family RNA modification enzyme [Sphingobacterium spiritivorum
           ATCC 33861]
          Length = 455

 Score =  385 bits (989), Expect = e-105,   Method: Composition-based stats.
 Identities = 124/469 (26%), Positives = 225/469 (47%), Gaps = 37/469 (7%)

Query: 12  HMVSQIVDQCIVPQR--FFVKSYGCQMNVYDSLRMEDMFFSQGYERVN---SMDDADLIV 66
           +M ++ V    + Q+    V + GC  N++DS  +         E V+   ++ + D++V
Sbjct: 11  NMKTKSVRSAEIKQKPRVNVITLGCSKNIHDSEVLMGQLKGNQMEVVHEASNIQNNDIVV 70

Query: 67  LNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNV 126
           +NTC   + A ++    + +   LK      G    V+V GC+++    E+      V+ 
Sbjct: 71  INTCGFIDNAKQESIDTILQYSELKEQ----GKINKVIVTGCLSERYKPELQAEISSVDA 126

Query: 127 VVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGC 186
             G       PELL         +  DY  E   ER+      +       ++  I EGC
Sbjct: 127 YFGTNDL---PELLSS-------IGADYRHELLGERMLSTPLHF-------SYFKIAEGC 169

Query: 187 DKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT 246
           ++ C+FC +P  RG  +S+ +  +V EA+ L  NG  E+ L+ Q++  + G  + G++  
Sbjct: 170 NRPCSFCAIPLMRGKHVSKPMEDLVKEAKFLASNGTKELILIAQDLT-YYGLDIYGKR-N 227

Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306
            SDLL +LS++ G+  +R   ++P      ++ A  +   +  YL +P+Q  SD +LKSM
Sbjct: 228 LSDLLRNLSDVDGIEWIRLQYAYPSGFPMDILDAMAERSNICNYLDMPLQHISDNMLKSM 287

Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
            R  T  +   ++++IR   PDIA+ +  I G+PGET+ DF+  ++ V++  + +   F 
Sbjct: 288 RRGTTKQKQIDLVNQIRDKVPDIALRTTLICGYPGETEQDFQEMLEWVEESRFDRLGCFT 347

Query: 367 YSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG 426
           YS    T   ++ + V E VK  R+  + +  +      N   +G+  +VL++K   +  
Sbjct: 348 YSHEEKTHAYSLTDDVPEEVKESRVEQIMEVQQGISYDINQEKIGKTYKVLVDKV--DGD 405

Query: 427 KLVGRS----PWLQSVVLNSKNH---NIGDIIKVRITDVKISTLYGELV 468
             +GR+    P + + VL S       IGD ++V+I   +   LYG +V
Sbjct: 406 YFIGRTEYDSPEVDNEVLISAKDTYARIGDFVQVKIDRAEDFDLYGTIV 454


>gi|227325860|ref|ZP_03829884.1| hypothetical protein PcarcW_00499 [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 435

 Score =  385 bits (989), Expect = e-105,   Method: Composition-based stats.
 Identities = 130/455 (28%), Positives = 218/455 (47%), Gaps = 34/455 (7%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC  N+ DS R+     ++GY+ V   DDA+L+++NTC   + A ++    +G
Sbjct: 3   KIGFLSLGCPKNLVDSERILTELRTEGYQVVPRYDDAELVIVNTCGFIDSAVQESLEAIG 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                         +  V+V GC+  A+  +I    P V  + GP +Y ++   + +   
Sbjct: 63  EA---------LNENGKVIVTGCLG-AKENQIREVHPKVLEITGPHSYEQVLSHVHQY-- 110

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                       + F  L + + G        A+L I EGC+  CTFC++P  RG   SR
Sbjct: 111 ------VPKPTHNPFTSL-VPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGDLDSR 163

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYSLSEI 257
            +  V+DEA++L+D GV E+ ++ Q+ +A+      R    +G+  K +   L   L+ +
Sbjct: 164 PIGSVLDEAKRLVDAGVKELLVISQDTSAYGADVKQRTGFWNGQPVKTSMVSLCEQLASL 223

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
              VRL Y   +P       + A G    ++PYL +P+Q  S +ILK M R        +
Sbjct: 224 GVWVRLHYVYPYPHVDDVIPLMAEG---KILPYLDIPLQHASPKILKLMKRPGAVERTLE 280

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
            I R R + PD+ + S FIVGFPGET++DF+  +D + +    +   FK+SP  G   + 
Sbjct: 281 RIKRWREICPDLTLRSTFIVGFPGETEEDFQMLLDFLKEAKLDRVGCFKFSPVEGAAANE 340

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPWL 435
           + +QV E VK ER     +  +          +G+ + VLI++  +E   G+ +  +P +
Sbjct: 341 LPDQVPEEVKEERFHRFMQLQQAISTQRLQDKIGREVLVLIDEIDEEGAIGRSMADAPEI 400

Query: 436 QS-VVLNSK-NHNIGDIIKVRITDVKISTLYGELV 468
              V LN +    +GDI+KV++       L+G  V
Sbjct: 401 DGAVYLNGETGVKVGDIVKVKVEHADEYDLWGSRV 435


>gi|289423873|ref|ZP_06425666.1| conserved hypothetical protein [Peptostreptococcus anaerobius
           653-L]
 gi|289155650|gb|EFD04322.1| conserved hypothetical protein [Peptostreptococcus anaerobius
           653-L]
          Length = 449

 Score =  385 bits (989), Expect = e-105,   Method: Composition-based stats.
 Identities = 133/449 (29%), Positives = 224/449 (49%), Gaps = 18/449 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +  ++S GC  N+ D+  M  +   +G++ V+S + AD++++NTC   E A ++    + 
Sbjct: 2   KIALESLGCSKNLVDAEIMLGLLNKKGHQLVSSPEGADVVIVNTCGFIESAKQESIDSIV 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
              +LKN     G    ++V+GC+AQ   +E+    P ++ +VG  +Y  +  ++++   
Sbjct: 62  EYADLKNE----GSLKYLLVSGCLAQRYPDELKEEIPEIDAIVGTGSYQNITTVVDKLMT 117

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
              +V+         E L      Y       A+L I EGCD  CT+C++P  RG   SR
Sbjct: 118 RDGIVEIGDINFSFNEDLP----RYISTPDHLAYLKIGEGCDNNCTYCIIPKLRGKYRSR 173

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            L  ++ EA  L++ GV E+ ++ Q+  +  G+   G +   ++LL  L+++ G   +R 
Sbjct: 174 KLEDLLAEAEGLLERGVKELVVIAQDT-SVYGRDRYG-RVMLAELLERLAKM-GFKWIRV 230

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
             S+P  +++ ++      D L  Y  +P+Q  SDRILK MNR  +  E R  ++ IRS 
Sbjct: 231 MYSYPEGITEEIVDVIAKYDNLCSYFDIPMQHASDRILKLMNRHTSNQELRSKVEMIRSK 290

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            PD  I + FIVGFPGETD+DF   +D V+ +G  +  +F YS    TP   + + +DE+
Sbjct: 291 IPDATIRTTFIVGFPGETDEDFDTLIDFVENMGLDRMGAFTYSREEDTPADRLPDHIDED 350

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVLN 441
            K ERL  L    +      N   +G   EVLIE    +    +GR+      + SV+  
Sbjct: 351 TKKERLERLMMVQQSVSEIINQKKIGNTYEVLIEDQ-IDDTLYIGRTKYDAEEIDSVIYV 409

Query: 442 SKNHNI--GDIIKVRITDVKISTLYGELV 468
               ++  GD++ V +       L G LV
Sbjct: 410 ETKRDLSRGDMVDVLVESAYEYDLKGHLV 438


>gi|289642430|ref|ZP_06474576.1| RNA modification enzyme, MiaB family [Frankia symbiont of Datisca
           glomerata]
 gi|289507775|gb|EFD28728.1| RNA modification enzyme, MiaB family [Frankia symbiont of Datisca
           glomerata]
          Length = 469

 Score =  385 bits (989), Expect = e-105,   Method: Composition-based stats.
 Identities = 164/439 (37%), Positives = 241/439 (54%), Gaps = 19/439 (4%)

Query: 36  MNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRI 95
           MNV+DS R+  M  + GY    +    D++V NTC +RE A  ++Y  LG++   K    
Sbjct: 1   MNVHDSERIAGMLEAAGYVPAATDVTPDVVVFNTCAVRENADNRLYGNLGQMYPAK---- 56

Query: 96  KEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV-VDTDY 154
           K    + + V GC+AQ +   I  R+P V+VV G    +RLP LLERAR      V+   
Sbjct: 57  KHHPGMQIAVGGCLAQKDRATITERAPWVDVVFGTHNLHRLPVLLERARHNAAAEVEIVE 116

Query: 155 SVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEA 214
           ++E     L        R    +A+++I  GCD  CTFC+VP  RG E  R    V+ E 
Sbjct: 117 ALEVFPSALP-----SRRSTHHSAWVSISVGCDNTCTFCIVPSLRGREADRRPGGVLAEV 171

Query: 215 RKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMS 274
             L+ +GV EITLLGQNVN+  G+ L G+   F+ LL++   I GL R+R+T+ HPRD +
Sbjct: 172 EALVADGVIEITLLGQNVNS-YGRSL-GDPGAFAKLLHACGTIDGLERVRFTSPHPRDFT 229

Query: 275 DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSD 334
           D +I+A      + P LH+P+QSGSD +L+ M R +    +  I++R+R+V P  AI++D
Sbjct: 230 DDVIEAMAATPNVCPQLHMPLQSGSDAVLRRMRRSYRQERFLGILERVRAVMPHAAITTD 289

Query: 335 FIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCL 394
            IVGFPGET+ DF  T+ +V +  +A AF+F+YS R GTP + M  QVD     +R   L
Sbjct: 290 IIVGFPGETEADFADTLRVVREARFAGAFTFQYSARAGTPAAAMDGQVDPAAVRDRYERL 349

Query: 395 QKKLREQQVSFNDACVGQIIEVL-IEKHGKEK---GKLVGRSPWLQSVVLNSKNH---NI 447
                E     N A VGQ +EVL +E  G++    G+  GR+   + V L + +      
Sbjct: 350 VAVQDEISWVGNRALVGQPVEVLVVEGEGRKDAATGRRSGRARDGRLVHLGAPSAALIRP 409

Query: 448 GDIIKVRITDVKISTLYGE 466
           GD+++  +T      L  +
Sbjct: 410 GDVVRTAVTRGAPHHLVAD 428


>gi|320177831|gb|EFW52817.1| hypothetical protein SGB_05069 [Shigella boydii ATCC 9905]
          Length = 441

 Score =  385 bits (989), Expect = e-105,   Method: Composition-based stats.
 Identities = 136/460 (29%), Positives = 224/460 (48%), Gaps = 35/460 (7%)

Query: 22  IVPQ-RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKV 80
           + PQ +    S GC  N+ DS R+     ++GY+ V S DDAD++++NTC   + A ++ 
Sbjct: 4   VTPQPKIGFVSLGCPKNLVDSERILTELRTEGYDVVPSYDDADMVIVNTCGFIDSAVQES 63

Query: 81  YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140
              +G              +  V+V GC+  A+ ++I    P V  + GP +Y ++ E +
Sbjct: 64  LEAIGEA---------LNENGKVIVTGCLG-AKEDQIREVHPKVLEITGPHSYEQVLEHV 113

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
                            + F  L + + G        A+L I EGC+  CTFC++P  RG
Sbjct: 114 HHY--------VPKPKHNPFLSL-VPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRG 164

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA------WRGKGLDGE--KCTFSDLLY 252
             +SR + +V+ EA++L+D GV EI ++ Q+ +A       R    +GE  K +   L  
Sbjct: 165 DLVSRPIGEVLSEAKRLVDAGVKEILVISQDTSAYGVDVKHRTGFHNGEPVKTSMVSLCE 224

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
            LS++    RL Y   +P       + A G    ++PYL +P+Q  S RILK M R  + 
Sbjct: 225 QLSKLGIWTRLHYVYPYPHVDDVIPLMAEG---KILPYLDIPLQHASPRILKLMKRPGSV 281

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
                 I + R + P++ + S FIVGFPGET++DF+  +D + +    +   FKYSP  G
Sbjct: 282 DRQLARIKQWREICPELTLRSTFIVGFPGETEEDFQMLLDFLKEARLDRIGCFKYSPVEG 341

Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVG 430
              + + +QV E VK ER     +  ++         VG+ I V+I++  +E   G+ + 
Sbjct: 342 ADANALPDQVPEEVKEERWNRFMQLQQQISAERLQEKVGREILVIIDEVDEEGAIGRSMA 401

Query: 431 RSPWLQS-VVLNSK-NHNIGDIIKVRITDVKISTLYGELV 468
            +P +   V LN + N   GDI++V++       L+G  V
Sbjct: 402 DAPEIDGAVYLNGETNVKPGDILRVKVEHADEYDLWGSRV 441


>gi|304316847|ref|YP_003851992.1| RNA modification enzyme, MiaB family [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778349|gb|ADL68908.1| RNA modification enzyme, MiaB family [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 437

 Score =  385 bits (989), Expect = e-105,   Method: Composition-based stats.
 Identities = 131/448 (29%), Positives = 225/448 (50%), Gaps = 20/448 (4%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
             + S GC  N  DS +M  +   +GY  VN+ +DAD++++NTC   E A  +  +++  
Sbjct: 4   VGIISLGCAKNTVDSEKMLGIIKEKGYNIVNNENDADVLIINTCGFIESAKRESINYIIE 63

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           +  LK  R+K      ++ AGC+++   EE+L   P ++ V+G   + ++ E++E    G
Sbjct: 64  MGKLKEKRLKS-----LIAAGCLSERYKEELLSNLPELDAVIGTGDFLKISEIIESTLNG 118

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           KRV++  ++ E        +            +L I EGC+  C+FC++P  RG   S  
Sbjct: 119 KRVLEYGHADELDDANSPRM----LSTPKHYGYLKIAEGCNNKCSFCIIPKLRGHYRSVK 174

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
           +  +V+EA+ +  NGV E+ L+ Q+     G  +  +K     LL  LS+I  +  +R  
Sbjct: 175 IEDLVNEAKIMAKNGVRELILIAQDTT-KYGIDIY-KKFMLPTLLRELSKIDEIKWIRIL 232

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
            ++P  ++D LI+       L+ Y+ +P+Q  ++ +LK M R     +  +IID++R+  
Sbjct: 233 YAYPDSITDELIEEIRTNSKLLKYVDMPLQHSNNNVLKRMKRNTQKEKIEEIIDKLRT-I 291

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
             + I + FIVGFPGETD +F    D + +  + +   F YS    T    M  QV E +
Sbjct: 292 SGMVIRTTFIVGFPGETDTEFDDLKDFIKEKKFNKLGVFTYSREEDTEAYGMPNQVPEKI 351

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVLNS 442
           K +R   +    R   ++ N + +G  +E++IE +  + G   GRS    P +  V    
Sbjct: 352 KQKRYNEIMLLQRNISLNNNKSLIGTELEIVIEGY--KDGLYYGRSYIDAPDIDGVTFVK 409

Query: 443 KN--HNIGDIIKVRITDVKISTLYGELV 468
            +   NIGD +KVRI+      L GEL+
Sbjct: 410 SDRKLNIGDFVKVRISKAFDYDLMGELL 437


>gi|15639741|ref|NP_219191.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Treponema
           pallidum subsp. pallidum str. Nichols]
 gi|189025979|ref|YP_001933751.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Treponema
           pallidum subsp. pallidum SS14]
 gi|6136574|sp|O83735|MIAB_TREPA RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|229891019|sp|B2S3Z3|MIAB_TREPS RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|3323060|gb|AAC65721.1| conserved hypothetical protein [Treponema pallidum subsp. pallidum
           str. Nichols]
 gi|189018554|gb|ACD71172.1| hypothetical protein TPASS_0754 [Treponema pallidum subsp. pallidum
           SS14]
 gi|291060116|gb|ADD72851.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Treponema pallidum subsp.
           pallidum str. Chicago]
          Length = 456

 Score =  385 bits (989), Expect = e-105,   Method: Composition-based stats.
 Identities = 143/455 (31%), Positives = 243/455 (53%), Gaps = 17/455 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
            +F ++YGCQMNV +S  +E +  ++G+ +       D++++NTC +R  A  +V+  LG
Sbjct: 2   TYFFETYGCQMNVAESASVEQLLLARGWTKAVDAQTCDVLIINTCSVRITAETRVFGRLG 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
              +LK           +++ GC+AQ   ++I ++ P ++ VVG   + R   + +    
Sbjct: 62  LFSSLKKK-----RAFFIILMGCMAQRLHDKIQQQFPRIDYVVGTFAHARFESIFQEIEQ 116

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT-----AFLTIQEGCDKFCTFCVVPYTRG 200
                D  +    +  R   V G        +     +F+ I  GC+ FC+FC+VPY RG
Sbjct: 117 KLTQKDYRFEFISERYREHPVSGYRFFASSYSEGSFQSFIPIMNGCNNFCSFCIVPYVRG 176

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL---SEI 257
            EISR L  ++ E   L + GV EITLLGQNVN++RG+  +G   TF  LL  L    E+
Sbjct: 177 REISRDLDAILQEVDVLSEKGVREITLLGQNVNSYRGRDREGNIVTFPQLLRHLVRRCEV 236

Query: 258 KG-LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           K  +  +R+ +SHP+D+SD LI        L   +HLPVQ G++ +LK M R +T  +Y 
Sbjct: 237 KDQIKWIRFVSSHPKDLSDDLIATIAQESRLCRLVHLPVQHGANGVLKRMRRSYTREQYL 296

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
            ++ ++++  P++A+S+D ++GFPGET++DF  T+DL+ ++ +  AF + Y+PR GTP  
Sbjct: 297 SLVGKLKASVPNVALSTDILIGFPGETEEDFEQTLDLMREVEFDSAFMYHYNPREGTPAY 356

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWL 435
           +  +++ +  +  RL  +        +    A VG+ + VL+E   +    +L G +   
Sbjct: 357 DFPDRIPDATRIARLQRVIALQMSTTLKKMRARVGKTLPVLVESRSRNNPEELFGHTELG 416

Query: 436 QSVVLNS--KNHNIGDIIKVRITDVKISTLYGELV 468
           +  VL        IG  + V++ +V+  TL   LV
Sbjct: 417 EMTVLEGKVDPTYIGRFVDVQVKEVRGRTLRAHLV 451


>gi|94987263|ref|YP_595196.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Lawsonia
           intracellularis PHE/MN1-00]
 gi|123385040|sp|Q1MQ52|MIAB_LAWIP RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|94731512|emb|CAJ54875.1| 2-methylthioadenine synthetase [Lawsonia intracellularis
           PHE/MN1-00]
          Length = 457

 Score =  385 bits (989), Expect = e-105,   Method: Composition-based stats.
 Identities = 177/461 (38%), Positives = 270/461 (58%), Gaps = 18/461 (3%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           ++ + F + ++GCQMN  DS  +      +G++ V S++DA +I++NTC +REK  +KVY
Sbjct: 1   MLQRNFHIITFGCQMNTNDSFWLSCSLQKKGFQEV-SLEDASIIIINTCSVREKPEQKVY 59

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S LG+IR+      K   D  VV+AGCVAQ  G     + P V +V G       P+ +E
Sbjct: 60  SILGKIRHA----TKNNPDSFVVIAGCVAQQLGATFFEKFPQVRLVSGSDGIAMAPDAIE 115

Query: 142 R--ARFGKRVVDTDYS--VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197
           R  A    ++  TD+S    ++    S +    N    + A++ I +GCD +CT+C+VPY
Sbjct: 116 RLYAEPDLKLNLTDFSEYYPEREYAFSKLTLSNNNTLALMAYVNIMQGCDNYCTYCIVPY 175

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW---RGKGLDGEKCTFSDLLYSL 254
           TRG + SRS+  +V+E ++LID+GV EI LLGQNVNA+   + K        F+ L++++
Sbjct: 176 TRGKQKSRSVQAIVEECQQLIDSGVKEIVLLGQNVNAYGLDKDKNSPANGVNFAMLVHTI 235

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
           + + GL RLR+ ++HP++ S  LI   G+   L P LHLP+QSGSD+IL+ M R+++  E
Sbjct: 236 ASLPGLERLRFFSAHPKEFSSELIDLFGEFSTLCPRLHLPLQSGSDKILRRMGRKYSMDE 295

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
           Y  II +++ VRPDIA+S+DFIVGFPGET++DF  T+  ++ I +  +FSF YS R GT 
Sbjct: 296 YISIITKLKKVRPDIALSTDFIVGFPGETEEDFLQTLQSINTIKFMSSFSFCYSDRPGTR 355

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK----EKGKLVG 430
            S    +VD  VK +RL  LQ    E   S+  + VG    VL+EK  +    +     G
Sbjct: 356 SSTFSNKVDHEVKIKRLEQLQATQLEHSTSWLKSRVGVETTVLLEKVSRKKAEDNNSWQG 415

Query: 431 RSPW--LQSVVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
           R PW  + +V+L    +    ++ VRI   K  +L  E ++
Sbjct: 416 RDPWGNVVNVILPQSTNISNTLLPVRIIASKKHSLVAEPLI 456


>gi|333006632|gb|EGK26131.1| RNA modification enzyme, MiaB family protein [Shigella flexneri
           VA-6]
          Length = 441

 Score =  385 bits (988), Expect = e-104,   Method: Composition-based stats.
 Identities = 136/460 (29%), Positives = 224/460 (48%), Gaps = 35/460 (7%)

Query: 22  IVPQ-RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKV 80
           + PQ +    S GC  N+ DS R+     ++GY+ V S DDAD++++NTC   + A ++ 
Sbjct: 4   VTPQPKIGFVSLGCPKNLVDSERILTELRTEGYDVVPSYDDADMVIVNTCGFIDSAVQES 63

Query: 81  YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140
              +G              +  V+V GC+  A+ ++I    P V  + GP +Y ++ E +
Sbjct: 64  LEAIGEA---------LNENGKVIVTGCLG-AKEDQIREVHPKVLEITGPHSYEQVLEHV 113

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
                            + F  L + + G        A+L I EGC+  CTFC++P  RG
Sbjct: 114 HHY--------VPKPKHNPFLSL-VPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRG 164

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA------WRGKGLDGE--KCTFSDLLY 252
             +SR + +V+ EA++L+D GV EI ++ Q+ +A       R    +GE  K +   L  
Sbjct: 165 DLVSRPIGEVLSEAKRLVDAGVKEILVISQDTSAYGVDVKHRTGFHNGEPVKTSMVSLCE 224

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
            LS++    RL Y   +P       + A G    ++PYL +P+Q  S RILK M R  + 
Sbjct: 225 QLSKLGIWTRLHYVYPYPHVDDVIPLMAEG---KILPYLDIPLQHASPRILKLMKRPGSV 281

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
                 I + R + P++ + S FIVGFPGET++DF+  +D + +    +   FKYSP  G
Sbjct: 282 DRQLARIKQWREICPELTLRSTFIVGFPGETEEDFQMLLDFLKEARLDRVGCFKYSPVEG 341

Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVG 430
              + + +QV E VK ER     +  ++         VG+ I V+I++  +E   G+ + 
Sbjct: 342 ADANALPDQVPEEVKEERWNRFMQLQQQISAERLQEKVGREILVIIDEVDEEGAIGRSMA 401

Query: 431 RSPWLQS-VVLNSK-NHNIGDIIKVRITDVKISTLYGELV 468
            +P +   V LN + N   GDI++V++       L+G  V
Sbjct: 402 DAPEIDGAVYLNGETNIKPGDILRVKVEHADEYDLWGSRV 441


>gi|197263566|ref|ZP_03163640.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|197241821|gb|EDY24441.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
          Length = 441

 Score =  385 bits (988), Expect = e-104,   Method: Composition-based stats.
 Identities = 131/455 (28%), Positives = 219/455 (48%), Gaps = 34/455 (7%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC  N+ DS R+     ++GY+ V   DDAD++++NTC   + A ++    +G
Sbjct: 9   KIGFVSLGCPKNLVDSERILTELRTEGYDVVPRYDDADMVIVNTCGFIDSAVQESLEAIG 68

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                         +  V+V GC+  A+ ++I    P V  + GP +Y ++ + +     
Sbjct: 69  EA---------LNENGKVIVTGCLG-AKEDQIREVHPKVLEITGPHSYEQVLQHVHHY-- 116

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                       + F  L + + G        A+L I EGC+  CTFC++P  RG  +SR
Sbjct: 117 ------VPKPKHNPFLSL-VPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGDLVSR 169

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNA------WRGKGLDGE--KCTFSDLLYSLSEI 257
            +  V+ EA++L+D GV EI ++ Q+ +A       R    +GE  K +   L   LS++
Sbjct: 170 PIGDVLSEAKRLVDAGVKEILVISQDTSAYGVDVKHRTGFHNGEPVKTSMVSLCEQLSKL 229

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
               RL Y   +P       + A G    ++PYL +P+Q  S RILK M R  +      
Sbjct: 230 GVWTRLHYVYPYPHVDDVIPLMAEG---KILPYLDIPLQHASPRILKLMKRPGSVDRQLA 286

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
            I + R + P++ + S FIVGFPGET++DF+  +D + +    +   FKYSP  G   + 
Sbjct: 287 RIKQWREICPELTLRSTFIVGFPGETEEDFQMLLDFLKEARLDRVGCFKYSPVEGAGANE 346

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPWL 435
           + +QV E VK ER     +  ++         VG+ I V+++   +E   G+ +  +P +
Sbjct: 347 LPDQVPEEVKEERWNRFMQLQQQISAERLQEKVGREILVIVDDVDEEGAIGRSMADAPEI 406

Query: 436 QS-VVLNSK-NHNIGDIIKVRITDVKISTLYGELV 468
              V LN + N   GDI++V++ +     L+G  V
Sbjct: 407 DGAVYLNGETNVKPGDIVRVKVENADEYDLWGSRV 441


>gi|256371457|ref|YP_003109281.1| RNA modification enzyme, MiaB family [Acidimicrobium ferrooxidans
           DSM 10331]
 gi|256008041|gb|ACU53608.1| RNA modification enzyme, MiaB family [Acidimicrobium ferrooxidans
           DSM 10331]
          Length = 487

 Score =  385 bits (988), Expect = e-104,   Method: Composition-based stats.
 Identities = 157/479 (32%), Positives = 248/479 (51%), Gaps = 37/479 (7%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           +P  + V+++GCQMN +DS R+  +    G  R +   DA ++V NTC IR  A E+ + 
Sbjct: 1   MPSSYVVRTFGCQMNEHDSERIAGVLEGLGLTRGDDPADASVVVFNTCTIRANADERFFG 60

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            + ++R  +    +    + +VVAGC+AQ EG  +L R+P V+V+VG     RL ELL  
Sbjct: 61  QVNQLREAR----RRNPSMRIVVAGCLAQGEGAGLLERAPHVDVIVGTHQVGRLAELLGA 116

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYN-RKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           A   + VVD                 G    +    A++TIQ GCD  C FC+VP  RG 
Sbjct: 117 ADGAEAVVDVREPEPGSVGLDDPTPWGEAVSEEPWRAWVTIQVGCDNRCAFCIVPRVRGP 176

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR------------------------- 236
           E SR    +V E R+L   GV E+TLLGQNVN++                          
Sbjct: 177 EASRPFDAIVAEVRELAARGVSEVTLLGQNVNSYGRDLVLAMRRAEDERERAQVASRSGV 236

Query: 237 ---GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHL 293
              G+G+   +  F+DL+ ++  + G+ R+R+T+ HP+DM     +A  +   +   LH 
Sbjct: 237 AFLGQGVPRVRPLFADLVRAVGAVPGIRRVRFTSPHPKDMRTETFQAMAETPTVCESLHF 296

Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
           P+QSGSDRIL +M+R ++A  +   +   R+   D+A+S+D IVGFPGETD DF AT+++
Sbjct: 297 PLQSGSDRILAAMHRGYSADRFLAKLAEARATIDDLAVSTDIIVGFPGETDADFEATLEV 356

Query: 354 VDKIGYAQAFSFKYSPRLGTPGSNMLEQ-VDENVKAERLLCLQKKLREQQVSFNDACVGQ 412
             +  +  A++F YSPR GT  + ++++ VD +V  ER   L +       + + A VG+
Sbjct: 357 AAEAAFDLAYTFIYSPRPGTEAAALVDRFVDPDVVHERFDRLVRVTERSAAAAHRARVGR 416

Query: 413 IIEVLIEKHGKEKGKL-VGRSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468
             E+LIE   ++  +    R+   + V +   +     G   + RI D +   L GE++
Sbjct: 417 DEEILIEGPSRKDPRTATARTRQHKLVHIPGLDARALGGRYGRARIVDARAHYLIGEII 475


>gi|148241399|ref|YP_001226556.1| 2-methylthioadenine synthetase [Synechococcus sp. RCC307]
 gi|238066614|sp|A5GQP4|RIMO_SYNR3 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|147849709|emb|CAK27203.1| 2-methylthioadenine synthetase [Synechococcus sp. RCC307]
          Length = 487

 Score =  385 bits (988), Expect = e-104,   Method: Composition-based stats.
 Identities = 129/452 (28%), Positives = 213/452 (47%), Gaps = 24/452 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
                  GC+ N  D+  M  +    GY       DA ++V+NTC   + A  +    L 
Sbjct: 39  TVAFAHLGCEKNRVDTEHMLGLLAQAGYGVSADEADAQVVVVNTCSFIQDARAESVRTLV 98

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +               +V+AGC+AQ   EE+L   P    +VG   Y  + E+LE+   
Sbjct: 99  DLAE---------QGKQIVIAGCLAQHFQEELLESLPEARAIVGTGDYQHIVEVLEQVEA 149

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G+RV           +        Y       A+L + EGCD  C FC++P  RG + SR
Sbjct: 150 GERVNRVSQVPTFVADENLP---RYRTTSEAVAYLKVAEGCDYRCAFCIIPKLRGDQRSR 206

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            +  +V EA++L   GV E+ L+ Q +    G  L G K   ++LL +L E++ +  +R 
Sbjct: 207 PIESIVAEAQQLAAQGVKELILISQ-ITTNYGLDLYG-KPQLAELLRALGEVE-IPWIRV 263

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
             ++P  ++  ++ A+ ++  ++PYL LP+Q     +L++MNR        Q++ RIR  
Sbjct: 264 HYAYPTGLTPEVLAAYREVPNVLPYLDLPLQHSHPEVLRAMNRPWQEGVNGQLLQRIREQ 323

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            PD  + + FIVG+PGET++ F   ++ V +  +     F +SP  GTP +++   V   
Sbjct: 324 LPDAVLRTTFIVGYPGETEEQFEHLLEFVQEQRFDHVGVFCFSPEDGTPAADLPNAVPAE 383

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVV-- 439
           V   R   L +  +      N A VG+I++VL+E+     G+L+GR    +P +   V  
Sbjct: 384 VAEARRGRLMEAQQAISAERNGAWVGRIVDVLVEQENPSSGELIGRCLRFAPDVDGEVRI 443

Query: 440 ---LNSKNHNIGDIIKVRITDVKISTLYGELV 468
               +    + G ++ VRIT   I  L GE+V
Sbjct: 444 RAGSHGAAASAGTMVPVRITAADIYDLEGEVV 475


>gi|87301773|ref|ZP_01084607.1| hypothetical protein WH5701_00570 [Synechococcus sp. WH 5701]
 gi|87283341|gb|EAQ75296.1| hypothetical protein WH5701_00570 [Synechococcus sp. WH 5701]
          Length = 453

 Score =  385 bits (988), Expect = e-104,   Method: Composition-based stats.
 Identities = 128/446 (28%), Positives = 212/446 (47%), Gaps = 24/446 (5%)

Query: 32  YGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLK 91
            GC+ N  D+  M  +    GY       DA ++V+NTC   + A ++    L  +    
Sbjct: 6   LGCEKNRVDTEHMLGLLAQAGYGISADERDASVVVVNTCSFIQDARQESVRTLVELAEQG 65

Query: 92  NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVD 151
                      +++AGC+AQ   EE+L   P    +VG   Y  + ++LER   G+RV  
Sbjct: 66  KE---------LIIAGCLAQHFREELLESLPEARAIVGTGDYQHIVDVLERVEAGERVNR 116

Query: 152 TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVV 211
                    +        Y       AFL + EGCD  C FC++P  RG + SR++  +V
Sbjct: 117 VSDVPTFVGDEHLP---RYRTTSEAVAFLKVAEGCDYRCAFCIIPRLRGDQRSRTIESIV 173

Query: 212 DEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPR 271
            EA +L D GV E+ L+ Q +    G  L G K   ++LL +L E++ +  +R   ++P 
Sbjct: 174 AEAHQLADQGVQELILISQ-ITTNYGLDLYG-KPQLAELLRALGEVE-IPWIRVHYAYPT 230

Query: 272 DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAI 331
            ++  ++ A+ ++  ++PYL LP+Q     +L++MNR        +++ RIR   PD  +
Sbjct: 231 GLTPEVLSAYREVPNVLPYLDLPLQHSHPEVLRAMNRPWQTGLTTELLGRIREQLPDAVL 290

Query: 332 SSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERL 391
            + FIVGFPGET++ F   +  V++  +     F +SP  GT   ++ + V   V  ER 
Sbjct: 291 RTTFIVGFPGETEEQFEHLLRFVEEQRFDHVGVFTFSPEDGTAAVDLPDPVPAEVAIERR 350

Query: 392 LCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVVLNSKN--- 444
             L    +      N + VG+I++VLIE+     G+++GR    +P +   V  S     
Sbjct: 351 NRLMAAQQPIAAERNASWVGRIVDVLIEQENPSNGEMIGRCARFAPDVDGEVRVSPGPGG 410

Query: 445 --HNIGDIIKVRITDVKISTLYGELV 468
                G ++ VR+T      L GE+V
Sbjct: 411 LCAAPGTMVPVRLTASTPYDLQGEVV 436


>gi|315299417|gb|EFU58669.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli MS 16-3]
          Length = 441

 Score =  385 bits (988), Expect = e-104,   Method: Composition-based stats.
 Identities = 136/460 (29%), Positives = 225/460 (48%), Gaps = 35/460 (7%)

Query: 22  IVPQ-RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKV 80
           + PQ +    S GC  N+ DS R+     ++GY+ V S DDAD++++NTC   + A ++ 
Sbjct: 4   VTPQPKIGFVSLGCPKNLVDSERILTELRTEGYDVVPSYDDADMVIVNTCGFIDSAVQES 63

Query: 81  YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140
              +G              +  V+V GC+  A+ ++I    P V  + GP +Y ++ E +
Sbjct: 64  LEAIGEA---------LNENGKVIVTGCLG-AKEDQIREVHPKVLEITGPHSYEQVLEHV 113

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
                            + F  L + + G        A+L I EGC+  CTFC++P  RG
Sbjct: 114 HHY--------VPKPKHNPFLSL-VPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRG 164

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA------WRGKGLDGE--KCTFSDLLY 252
             +SR + +V+ EA++L+D GV EI ++ Q+ +A       R    +GE  K +   L  
Sbjct: 165 DLVSRPIGEVLSEAKRLVDAGVKEILVISQDTSAYGVDVKHRTGFHNGEPVKTSMVSLCE 224

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
            LS++    RL Y   +P       ++A G    ++PYL +P+Q  S RILK M R  + 
Sbjct: 225 QLSKLGIWTRLHYVYPYPHVDDVIPLRAEG---KILPYLDIPLQHASPRILKLMKRPGSV 281

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
                 I + R + P++ + S FIVGFPGET++DF+  +D + +    +   FKYSP  G
Sbjct: 282 DRQLARIKQWRKICPELTLRSTFIVGFPGETEEDFQMLLDFLKEARLDRVGCFKYSPVEG 341

Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVG 430
              + + +QV E VK ER     +  ++         VG+ I V+I++  +E   G+ + 
Sbjct: 342 ADANALPDQVPEEVKEERWNRFMQLQQQISAERLQEKVGREILVIIDEVDEEGAIGRSMA 401

Query: 431 RSPWLQS-VVLNSK-NHNIGDIIKVRITDVKISTLYGELV 468
            +P +   V LN + N   GDI++V++       L+G  V
Sbjct: 402 DAPEIDGAVYLNGETNVKPGDILRVKVEHADEYDLWGSRV 441


>gi|153214874|ref|ZP_01949672.1| conserved hypothetical protein [Vibrio cholerae 1587]
 gi|229513543|ref|ZP_04403007.1| ribosomal protein S12p Asp88 methylthiotransferase [Vibrio cholerae
           TMA 21]
 gi|124115033|gb|EAY33853.1| conserved hypothetical protein [Vibrio cholerae 1587]
 gi|229349420|gb|EEO14376.1| ribosomal protein S12p Asp88 methylthiotransferase [Vibrio cholerae
           TMA 21]
          Length = 470

 Score =  385 bits (988), Expect = e-104,   Method: Composition-based stats.
 Identities = 131/469 (27%), Positives = 217/469 (46%), Gaps = 36/469 (7%)

Query: 13  MVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHI 72
           +  Q  +      +    S GC  N+ DS R+     ++GYE VNS  D+D++++NTC  
Sbjct: 21  IAEQSQNSQTTGNKIGFVSLGCPKNLVDSERILTQLRTEGYEIVNSYHDSDVVIVNTCGF 80

Query: 73  REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT 132
            + A ++    +G    LK +         V+V GC+   E +EI +  P V  + GP  
Sbjct: 81  IDSAVQESLDTIGEA--LKENGK-------VIVTGCLGARE-DEIRQVHPNVLGITGPHA 130

Query: 133 YYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTF 192
           Y  + E + +               + F  L + D G        A+L I EGC+  CTF
Sbjct: 131 YQNVLEHVHQY--------APKPAHNPFTSL-VPDHGVKLTPKHYAYLKISEGCNHRCTF 181

Query: 193 CVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE--------- 243
           C++P  RG  +SR + +++ EA +L + GV E+ ++ Q+ +A  G               
Sbjct: 182 CIIPSMRGDLVSRPVGEIIGEAERLKNAGVKELLVISQDTSA-YGVDTKHSLGFANGSPV 240

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
           +     L   L ++   VRL Y   +P       + A G    ++PYL +P Q  S R+L
Sbjct: 241 RHNIKALSEELGKMGIWVRLHYVYPYPHVDEIIPLMAEG---KVLPYLDIPFQHASPRVL 297

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           K M R   A    + I + R + P++ I S FIVGFPGET++DF+  +D + +    +  
Sbjct: 298 KMMKRPGQAERTLERIKKWREICPELVIRSTFIVGFPGETEEDFQILLDWLKEAQLDRVG 357

Query: 364 SFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK 423
            FKYSP  G   + + EQ+ E VK +R        +E   +     +G  ++VLI++  +
Sbjct: 358 CFKYSPVEGAAANEIEEQIPEEVKQDRFERFMLVQQEISAAKLQKRIGSTMQVLIDEVDE 417

Query: 424 EK--GKLVGRSPWLQS-VVLNSK-NHNIGDIIKVRITDVKISTLYGELV 468
           E   G+    +P +   V LN + N   G+++ V I       L+G ++
Sbjct: 418 EGAIGRTYADAPEIDGLVYLNGETNLKPGELVNVVIEHADEYDLWGSVL 466


>gi|118402077|ref|XP_001033358.1| RNA modification enzyme, MiaB family [Tetrahymena thermophila]
 gi|89287706|gb|EAR85695.1| RNA modification enzyme, MiaB family [Tetrahymena thermophila
           SB210]
          Length = 604

 Score =  385 bits (988), Expect = e-104,   Method: Composition-based stats.
 Identities = 144/452 (31%), Positives = 237/452 (52%), Gaps = 40/452 (8%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +++F+++YGCQMN  D+  +  +    G+ R +++D+AD++ LNTC IRE A  K++  L
Sbjct: 76  KKYFIETYGCQMNESDTEIISGILQKAGFVRESNLDNADIVFLNTCAIREGAENKIWKRL 135

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             IR  K    K    L+  V GC+A+   ++++ ++ +V+++VGP  Y  LP L++   
Sbjct: 136 ENIRAYKRKEKK---QLITGVLGCMAERLKDKLVEKNKVVDIIVGPDAYRDLPRLIQSLD 192

Query: 145 FG--KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
                  ++   S+E+ +  +  V    +      AF++I  GC+  C+FC+VP+TRG E
Sbjct: 193 PSTDDYSINVQLSLEETYADIVPVRQNPD---SCQAFVSIMRGCNNMCSFCIVPFTRGRE 249

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD--------------------- 241
            SR +  +V+E + L + GV EITLLGQNVN++  K  +                     
Sbjct: 250 RSRDIQSIVEEVKMLANQGVKEITLLGQNVNSYFDKEAEGYEDLDHLNSEGFKETFKLRK 309

Query: 242 ----------GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL 291
                     G+   F+ LL  +++    VR R+T+ HP+D  D +++       +   L
Sbjct: 310 VIRALLNSLLGKGARFAHLLEEVAKAAPEVRFRFTSPHPKDFPDPVLQVIKKYPNIAKNL 369

Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351
           H+P QSG+  +L  M R ++   Y  ++D I+   P I +SSDFI GF GETD +F+ T+
Sbjct: 370 HMPAQSGNTEMLTRMRRNYSRENYINLVDHIKQTIPGITLSSDFICGFCGETDQEFQDTL 429

Query: 352 DLVDKIGYAQAFSFKYSPRLGTPGSNML-EQVDENVKAERLLCLQKKLREQQVSFNDACV 410
            L++ + Y  AF F YS R  T       + V E VK +RL  +     + Q   N   V
Sbjct: 430 TLLEYVKYENAFLFAYSLREKTHAHRHYQDDVPEEVKKQRLQQMIDVFHKNQELVNKQEV 489

Query: 411 GQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
           G+I  VL+E  GK + ++ GR+   + V+ NS
Sbjct: 490 GRIHLVLVEGKGKFENQIRGRTDTNKRVIFNS 521


>gi|153825111|ref|ZP_01977778.1| conserved hypothetical protein [Vibrio cholerae MZO-2]
 gi|229527451|ref|ZP_04416843.1| MiaB-like tRNA modifying enzyme YliG [Vibrio cholerae 12129(1)]
 gi|149741257|gb|EDM55299.1| conserved hypothetical protein [Vibrio cholerae MZO-2]
 gi|229335083|gb|EEO00568.1| MiaB-like tRNA modifying enzyme YliG [Vibrio cholerae 12129(1)]
 gi|327485100|gb|AEA79507.1| Ribosomal protein S12p Asp88 methylthiotransferase [Vibrio cholerae
           LMA3894-4]
          Length = 470

 Score =  385 bits (988), Expect = e-104,   Method: Composition-based stats.
 Identities = 131/469 (27%), Positives = 218/469 (46%), Gaps = 36/469 (7%)

Query: 13  MVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHI 72
           +  Q  +      +    S GC  N+ DS R+     ++GYE VNS  D+D++++NTC  
Sbjct: 21  IAEQSQNSQTTGNKIGFVSLGCPKNLVDSERILTQLRTEGYEIVNSYHDSDVVIVNTCGF 80

Query: 73  REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT 132
            + A ++    +G    LK +         V+V GC+   E +EI +  P V  + GP  
Sbjct: 81  IDSAVQESLDTIGEA--LKENGK-------VIVTGCLGARE-DEIRQVHPNVLGITGPHA 130

Query: 133 YYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTF 192
           Y  + E + +               + F  L + D G        A+L I EGC+  CTF
Sbjct: 131 YQNVLEHVHQY--------APKPAHNPFTSL-VPDHGVKLTPKHYAYLKISEGCNHRCTF 181

Query: 193 CVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE--------- 243
           C++P  RG  +SR + +++ EA +L + GV E+ ++ Q+ +A  G               
Sbjct: 182 CIIPSMRGDLVSRPVGEIIGEAERLKNAGVKELLVISQDTSA-YGVDTKHSLGFANGSPV 240

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
           +     L   L ++   VRL Y   +P       + A G    ++PYL +P Q  S R+L
Sbjct: 241 RHNIKALSEELGKMGIWVRLHYVYPYPHVDEIIPLMAEG---KVLPYLDIPFQHASPRVL 297

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           K M R   A    + I + R + P++ I S FIVGFPGET++DF+  +D + +    +  
Sbjct: 298 KMMKRPGQAERTLERIKKWREICPELVIRSTFIVGFPGETEEDFQILLDWLKEAQLDRVG 357

Query: 364 SFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK 423
            FKYSP  G   + + EQ+ E+VK +R        +E   +     +G  ++VLI++  +
Sbjct: 358 CFKYSPVEGAAANEIEEQIPEDVKQDRFERFMLVQQEISAAKLQKRIGSTMQVLIDEVDE 417

Query: 424 EK--GKLVGRSPWLQS-VVLNSK-NHNIGDIIKVRITDVKISTLYGELV 468
           E   G+    +P +   V LN + N   G+++ V I       L+G ++
Sbjct: 418 EGAIGRTYADAPEIDGLVYLNGETNLKPGELVNVVIEHADEYDLWGSVL 466


>gi|332297280|ref|YP_004439202.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Treponema
           brennaborense DSM 12168]
 gi|332180383|gb|AEE16071.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Treponema
           brennaborense DSM 12168]
          Length = 470

 Score =  385 bits (988), Expect = e-104,   Method: Composition-based stats.
 Identities = 140/474 (29%), Positives = 238/474 (50%), Gaps = 42/474 (8%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
            +F ++YGCQMN  +S  +E +  ++G+   ++ + AD+ ++NTC +R  A  +++  LG
Sbjct: 2   TYFFETYGCQMNKAESASLEQLLIARGWTASDTPESADMAIINTCSVRATAENRIFGRLG 61

Query: 86  RIRNLK------------------NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVV 127
               LK                           L +VV GC+A+   + + ++ P+++ V
Sbjct: 62  WFSALKAVRSGSKDAKNASFPDAAREFASGRPPLTLVVTGCMAERLLDSLQKQYPVIDYV 121

Query: 128 VGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCD 187
           VG        ++++     +     D      F  +S   G +      TAF+ I  GC+
Sbjct: 122 VGNFQKQHFQDIIDAVEQQRAPFVVDEEPVYSFAPVSWEPGAF------TAFVPIMHGCN 175

Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK--------- 238
            FCT+C+VPY RG E+SRS + ++ E  +L  + V EITLLGQNVN++R           
Sbjct: 176 NFCTYCIVPYVRGREVSRSPADILSELDQLSAHNVREITLLGQNVNSYRWDCNAETGAAE 235

Query: 239 ------GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLH 292
                          +D L   +   G VR  + +SHP+D+SD LI       VL  ++H
Sbjct: 236 TGDSAVDFPALVQLIADHLRKTASPIGWVR--FMSSHPKDLSDRLIDVIAREPVLCRHIH 293

Query: 293 LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352
           LPVQ GS  +L+ MNRR+T  +Y  ++ RIR+  PD ++++D ++GFPGE D DF  T+ 
Sbjct: 294 LPVQHGSSDVLRRMNRRYTREQYLDLVSRIRTKLPDASLTTDILIGFPGENDADFEQTVS 353

Query: 353 LVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQ 412
           L++ + Y  A+ + Y+PR GTP +    Q+    K  RL  +     E   +     +G 
Sbjct: 354 LMESVRYQAAYMYYYNPREGTPAAEYDGQIPLETKKSRLKRIIDMQLEITRAETAKRLGS 413

Query: 413 IIEVLIEKHGKEK-GKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYG 465
            ++VL E   ++  G+L+G++   + VV  +    IG  ++V + ++  +T+ G
Sbjct: 414 TVKVLAESVSRDNPGELLGKTEQDERVVFAAPRSCIGTFVQVLLVELTGNTIRG 467


>gi|296103227|ref|YP_003613373.1| hypothetical protein ECL_02885 [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295057686|gb|ADF62424.1| hypothetical protein ECL_02885 [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 441

 Score =  385 bits (988), Expect = e-104,   Method: Composition-based stats.
 Identities = 134/457 (29%), Positives = 221/457 (48%), Gaps = 34/457 (7%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P +    S GC  N+ DS R+     ++GY+ V S D+AD++++NTC   + A ++    
Sbjct: 7   PPKIGFVSLGCPKNLVDSERILTELRTEGYDVVPSYDNADMVIVNTCGFIDSAVQESLEA 66

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G                 V+V GC+  A+ ++I    P V  + GP +Y ++ E +   
Sbjct: 67  IGEALTENGK---------VIVTGCLG-AKEDQIREVHPKVLEITGPHSYEQVLEHVHHY 116

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
                         + F  L + + G        A+L I EGC+  CTFC++P  RG  +
Sbjct: 117 --------VPKPKHNPFLSL-VPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGDLV 167

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNA------WRGKGLDGE--KCTFSDLLYSLS 255
           SR + +V+ EA++L D GV E+ ++ Q+ +A       R    +GE  K +   L   L+
Sbjct: 168 SRPIGEVLAEAKRLADAGVKELLVISQDTSAYGVDVKHRSGFHNGEPVKTSMVGLCEQLA 227

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
           ++    RL Y   +P       + A G    ++PYL +P+Q  S RILK M R  +    
Sbjct: 228 KLGIWTRLHYVYPYPHVDDVIPLMAEG---KILPYLDIPLQHASPRILKLMKRPGSVDRQ 284

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
              I + R + PD+ + S FIVGFPGET++DF+  +D + +    +   FKYSP  G   
Sbjct: 285 LARIKQWREICPDLTLRSTFIVGFPGETEEDFQMLLDFLKEARLDRVGCFKYSPVEGATA 344

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSP 433
           + + +QV E VK ER     +  ++         VG+ I V+I++  +E   G+ +  +P
Sbjct: 345 NELADQVPEEVKEERWNRFMQLQQQISAERLQEKVGREIMVIIDEVDEEGAIGRSMADAP 404

Query: 434 WLQS-VVLNSK-NHNIGDIIKVRITDVKISTLYGELV 468
            +   V LN + N   GDII+V++ +     L+G  V
Sbjct: 405 EIDGAVYLNGETNVKPGDIIRVKVENADEYDLWGSRV 441


>gi|152969423|ref|YP_001334532.1| ribosomal protein S12 methylthiotransferase [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|238893892|ref|YP_002918626.1| ribosomal protein S12 methylthiotransferase [Klebsiella pneumoniae
           NTUH-K2044]
 gi|262041072|ref|ZP_06014291.1| MiaB family RNA modification enzyme [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|330008410|ref|ZP_08306227.1| ribosomal protein S12 methylthiotransferase RimO [Klebsiella sp. MS
           92-3]
 gi|238066343|sp|A6T6T1|RIMO_KLEP7 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|150954272|gb|ABR76302.1| hypothetical protein KPN_00866 [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|238546208|dbj|BAH62559.1| hypothetical protein KP1_1825 [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
 gi|259041630|gb|EEW42682.1| MiaB family RNA modification enzyme [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|328535155|gb|EGF61659.1| ribosomal protein S12 methylthiotransferase RimO [Klebsiella sp. MS
           92-3]
          Length = 441

 Score =  385 bits (988), Expect = e-104,   Method: Composition-based stats.
 Identities = 133/455 (29%), Positives = 223/455 (49%), Gaps = 34/455 (7%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC  N+ DS R+     ++GY+ V + D+AD++++NTC   + A ++    +G
Sbjct: 9   KIGFVSLGCPKNLVDSERILTELRTEGYDVVPTYDNADMVIVNTCGFIDSAVQESLEAIG 68

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
               LK +         V+V GC+  A+ ++I    P V  + GP +Y ++ E +     
Sbjct: 69  EA--LKENGK-------VIVTGCLG-AKEDQIREVHPKVLEITGPHSYEQVLEHVHHY-- 116

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                 T     + F  L + + G        A+L I EGC+  CTFC++P  RG  +SR
Sbjct: 117 ------TPKPKHNPFLSL-VPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGDLVSR 169

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNA------WRGKGLDGE--KCTFSDLLYSLSEI 257
            + +V+ EA++L D GV E+ ++ Q+ +A       R    +G   K +   L   L+++
Sbjct: 170 PIGEVLAEAKRLADAGVKELLVISQDTSAYGVDVKHRTGFHNGMPVKTSMVSLCEELAKL 229

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
              VRL Y   +P       + A G    ++PYL +P+Q  S RILK M R  +A     
Sbjct: 230 GIWVRLHYVYPYPHVDDVIPLMAEG---KILPYLDIPLQHASPRILKLMKRPGSADRQLA 286

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
            I + R + PD+ + S FIVGFPGET++DF+  +D + +    +   FKYSP  G   + 
Sbjct: 287 RIKQWREICPDLTLRSTFIVGFPGETEEDFQMLLDFLKEARLDRVGCFKYSPVEGATANE 346

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPWL 435
           + +QV E VK ER     +  ++         VG+ I VL+++  +E   G+ +  +P +
Sbjct: 347 LADQVPEEVKEERWNRFMQLQQQISAERLQEKVGREILVLVDEVDEEGAIGRSMADAPEI 406

Query: 436 QS-VVLNSK-NHNIGDIIKVRITDVKISTLYGELV 468
              V LN +     GD+++V++       L+G  V
Sbjct: 407 DGAVYLNGETRVKPGDVVRVKVEHADEYDLWGTRV 441


>gi|261211176|ref|ZP_05925465.1| ribosomal protein S12p Asp88 methylthiotransferase [Vibrio sp.
           RC341]
 gi|260839677|gb|EEX66288.1| ribosomal protein S12p Asp88 methylthiotransferase [Vibrio sp.
           RC341]
          Length = 470

 Score =  385 bits (988), Expect = e-104,   Method: Composition-based stats.
 Identities = 129/469 (27%), Positives = 217/469 (46%), Gaps = 36/469 (7%)

Query: 13  MVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHI 72
           +  Q         +    S GC  N+ DS R+     ++GYE VNS  D+D++++NTC  
Sbjct: 21  IAEQSQGSQTTGNKIGFVSLGCPKNLVDSERILTQLRTEGYEIVNSYHDSDVVIVNTCGF 80

Query: 73  REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT 132
            + A ++    +G    LK +         V+V GC+   E +EI +  P V  + GP  
Sbjct: 81  IDSAVQESLDTIGEA--LKENGK-------VIVTGCLGARE-DEIRQVHPNVLGITGPHA 130

Query: 133 YYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTF 192
           Y  + E + +               + F  L + D G        A+L I EGC+  CTF
Sbjct: 131 YQNVLEHVHQY--------APKPAHNPFTSL-VPDHGVKLTPKHYAYLKISEGCNHRCTF 181

Query: 193 CVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE--------- 243
           C++P  RG  +SR + +++ EA +L + GV E+ ++ Q+ +A  G               
Sbjct: 182 CIIPSMRGDLVSRPVGEIIGEAERLKNAGVKELLVISQDTSA-YGVDTKHSLGFANGSPV 240

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
           +     L   L ++   +RL Y   +P       + A G    ++PYL +P Q  S R+L
Sbjct: 241 RHNIKALSEELGKMGIWIRLHYVYPYPHVDEIIPLMAEG---KVLPYLDIPFQHASPRVL 297

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           K M R   A    + I + R + P++ I S FIVGFPGET++DF+  +D + +    +  
Sbjct: 298 KMMKRPGQAERTLERIKKWREICPELVIRSTFIVGFPGETEEDFQILLDWLKEAQLDRVG 357

Query: 364 SFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK 423
            FKYSP  G   + + +Q+ E+VK +R        +E   +     +G  ++VLI++  +
Sbjct: 358 CFKYSPVEGAAANEIEDQIPEDVKQDRFERFMLVQQEISAAKLQKRIGSTMQVLIDEVDE 417

Query: 424 EK--GKLVGRSPWLQS-VVLNSK-NHNIGDIIKVRITDVKISTLYGELV 468
           E   G+    +P +   V LN + N   G+++ V I       L+G ++
Sbjct: 418 EGAIGRTYADAPEIDGLVYLNGETNLKPGELVNVVIEHADEYDLWGSVL 466


>gi|148654700|ref|YP_001274905.1| MiaB-like tRNA modifying protein YliG [Roseiflexus sp. RS-1]
 gi|238066581|sp|A5UQQ2|RIMO_ROSS1 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|148566810|gb|ABQ88955.1| MiaB-like tRNA modifying enzyme YliG [Roseiflexus sp. RS-1]
          Length = 472

 Score =  384 bits (987), Expect = e-104,   Method: Composition-based stats.
 Identities = 127/467 (27%), Positives = 221/467 (47%), Gaps = 33/467 (7%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +F + + GC  N  DS  M  +  +QG+  V   DDAD++V+NTC     A E+    L 
Sbjct: 2   KFHIITLGCPKNQVDSEGMSSILAAQGHTPVAHADDADVVVVNTCSFIAAAREETLDVLR 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +   K           +V AGC+A++    ++  +P V+ ++  + + R+ ++++  + 
Sbjct: 62  EVAARKT------PGQYLVAAGCMAESH-SALVAAAPGVDALLSTREWMRIGDVVDTLQR 114

Query: 146 GKRVVDTDYSVEDKFERLSIVD----------------GGYNRKRGVTAFLTIQEGCDKF 189
              V  +  + E      +                       R  G +A+L I +GC+  
Sbjct: 115 EPAVAASSAAREIIPLSSAPASSDDLRVPGAYADWRTAPIRRRITGPSAYLKISDGCNLR 174

Query: 190 CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSD 249
           C FC +P  +G   S+++  ++ EA++L D GV EI L+ Q++    G+ L G K   + 
Sbjct: 175 CAFCTIPSFKGDMRSKAVGAILGEAQELADAGVKEIVLVAQHLT-DYGRDL-GLKDGLAL 232

Query: 250 LLYSLSEI-KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
           LL  L  +      +R   ++P  +S+ LI        +  YL +P+Q      L+ M+R
Sbjct: 233 LLDELCAVLPKDRWVRLMYAYPHGISERLIATMARHPQICHYLDMPLQHAHPETLRRMHR 292

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
              +   R++I  +R+  PDIA+ S FI+GFPGET  +FRA    ++++ + +   F+YS
Sbjct: 293 PPDSDRTRRLIADLRAAMPDIALRSTFIIGFPGETSAEFRALTAFLEEVQFDRVGVFRYS 352

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGK 427
              GTP + + +Q+ + V   R   + +  +      N   VG++I VL+E  G  + G+
Sbjct: 353 REPGTPAAALPDQIPQRVIERRWHTIMRLQQGISRQRNRRWVGRVIRVLVEGQGQTDDGR 412

Query: 428 L--VGRS----PWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           L  VGRS    P +   VL       G  + VR+T      L+GE+V
Sbjct: 413 LLSVGRSFRDAPEVDGQVLFWGTAATGTFVDVRVTQALDYDLWGEMV 459


>gi|255083280|ref|XP_002504626.1| predicted protein [Micromonas sp. RCC299]
 gi|226519894|gb|ACO65884.1| predicted protein [Micromonas sp. RCC299]
          Length = 495

 Score =  384 bits (987), Expect = e-104,   Method: Composition-based stats.
 Identities = 159/489 (32%), Positives = 245/489 (50%), Gaps = 52/489 (10%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +  +V++YGCQMNV DS  M  +   +GY+    M DAD+I++NTC IR+KA  K++  L
Sbjct: 2   KNVYVETYGCQMNVNDSEVMLSVLKDRGYDETGDMHDADVILVNTCAIRDKAEAKIWQRL 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
              ++L+  + K     +V V GC+A+    ++L    + ++V GP  Y  LP L+E   
Sbjct: 62  AYFKSLRRKKKKSEKP-VVGVLGCMAERLKTQLLEADQLADLVAGPDAYRDLPNLIEAVA 120

Query: 145 -FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             G++ ++   SVE+ +  +  V     ++    AF+TI  GCD  C FC+VPYTRG E 
Sbjct: 121 GTGEKAMNVQLSVEETYADIIPVR----KEGAHAAFVTIMRGCDNACAFCIVPYTRGRER 176

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR--------------GKGLDGEKCT--- 246
           SR  + +  E R L + GV E+TLLGQNVN++               G+G+ G       
Sbjct: 177 SRDPASIEYEVRLLSEQGVKEVTLLGQNVNSYAYQEGETDFLSMLAAGEGVVGSDAAARR 236

Query: 247 ------FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300
                 F+ LL  ++ I   +R+R+T+ HP+D  D +++       +   LH+P QSGS 
Sbjct: 237 REGAVQFAALLDRVAAIDPEMRVRFTSPHPKDFPDEVLEVIARRPNVCNCLHMPAQSGST 296

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
             L+ M R +T   Y  +IDR++ + P  AI++D I GF GET++D   T+ L+  +GY 
Sbjct: 297 ATLERMARGYTREAYLTLIDRVKEIIPGCAITTDIISGFCGETEEDHADTVSLMKAVGYE 356

Query: 361 QAFSFKYSPRLGTPGSNM-LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419
           QAF F YS R GT  +    + V E+VK  RL  +    R          VG+   VL+E
Sbjct: 357 QAFMFAYSERDGTSAARHQEDDVPEDVKQRRLAEVIDAFRTTAAERQKEEVGRTHLVLVE 416

Query: 420 KHGKEKGK-LVGRSPWLQSVVLNSKNHNI---------------------GDIIKVRITD 457
              K+  + L G++   +  V       I                     G+ + VR+T 
Sbjct: 417 GPSKKNERELTGKTDSAKWAVFADTPVGIYGGDEDEERTGGEKGVATPRAGEYVAVRVTG 476

Query: 458 VKISTLYGE 466
               TL+GE
Sbjct: 477 CSTGTLFGE 485


>gi|156934668|ref|YP_001438584.1| ribosomal protein S12 methylthiotransferase [Cronobacter sakazakii
           ATCC BAA-894]
 gi|238065354|sp|A7MF19|RIMO_ENTS8 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|156532922|gb|ABU77748.1| hypothetical protein ESA_02503 [Cronobacter sakazakii ATCC BAA-894]
          Length = 441

 Score =  384 bits (987), Expect = e-104,   Method: Composition-based stats.
 Identities = 129/463 (27%), Positives = 221/463 (47%), Gaps = 34/463 (7%)

Query: 18  VDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA 77
           +   +   +    S GC  N+ DS R+     ++GY+ V   DDAD++++NTC   + A 
Sbjct: 1   MSNVMQQPKIGFVSLGCPKNLVDSERILTELRTEGYDVVPRYDDADMVIVNTCGFIDSAV 60

Query: 78  EKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLP 137
           ++    +G              +  V+V GC+  A+ ++I    P V  + GP +Y ++ 
Sbjct: 61  QESLEAIGEA---------LNENGKVIVTGCLG-AKEDQIREVHPKVLEITGPHSYEQVL 110

Query: 138 ELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197
           + +                 + F  L + + G        A+L I EGC+  CTFC++P 
Sbjct: 111 QHVHHY--------VPKPKHNPFLSL-VPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPS 161

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA------WRGKGLDGE--KCTFSD 249
            RG   SR +  V+ EA++L++ GV E+ ++ Q+ +A       R    +G   K +   
Sbjct: 162 MRGDLDSRPIGDVLAEAKRLVEAGVKELLVISQDTSAYGVDVKHRTGFWNGSPVKTSMVS 221

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
           L   L+++   VRL Y   +P       + A G    ++PYL +P+Q  S RILK M R 
Sbjct: 222 LCEQLAKLGVWVRLHYVYPYPHVDDVIPLMAEG---KILPYLDIPLQHASPRILKLMKRP 278

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369
            +       I + R + P++ + S FIVGFPGET+DDF+  +D + +    +   FKYSP
Sbjct: 279 GSVDRQLARIKQWREICPELTLRSTFIVGFPGETEDDFQMLLDFLKEARLDRVGCFKYSP 338

Query: 370 RLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GK 427
             G   +++ +QV E VK ER        ++         VG+ I V+I++  +E   G+
Sbjct: 339 VEGATANDLPDQVPEEVKEERWNRFMALQQQISAERLQEKVGREILVIIDEVDEEGAIGR 398

Query: 428 LVGRSPWLQS-VVLNSK-NHNIGDIIKVRITDVKISTLYGELV 468
            +  +P +   V LN +     GD+++V++ +     L+G LV
Sbjct: 399 SMADAPEIDGAVYLNGETKLKPGDVVRVKVENADEYDLWGSLV 441


>gi|88807145|ref|ZP_01122657.1| possible Fe-S oxidoreductase [Synechococcus sp. WH 7805]
 gi|88788359|gb|EAR19514.1| possible Fe-S oxidoreductase [Synechococcus sp. WH 7805]
          Length = 468

 Score =  384 bits (987), Expect = e-104,   Method: Composition-based stats.
 Identities = 130/460 (28%), Positives = 215/460 (46%), Gaps = 26/460 (5%)

Query: 19  DQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA-A 77
           D             GC+ N  D+  M  +    GY   +   DA ++V+NTC   + A  
Sbjct: 12  DGASTKPTVAFAHLGCEKNRVDTEHMLGLLSEAGYGVSSDESDASVVVVNTCSFIQDARE 71

Query: 78  EKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLP 137
           E V + +G     K           +++AGC+AQ   EE+L   P    +VG   Y  + 
Sbjct: 72  ESVRTLVGLAEQGKE----------LIIAGCLAQHFQEELLESLPEAKAIVGTGDYQHIV 121

Query: 138 ELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197
           E+LER   G+RV     +     +        +       A+L + EGCD  C FC++P+
Sbjct: 122 EVLERVEAGERVNRVSKTPTFVADERLP---RHRTTGEAVAYLKVAEGCDYRCAFCIIPH 178

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257
            RG + SR +  +V EA +L   GV E+ L+ Q +    G  L G +   +DLL +L E+
Sbjct: 179 LRGNQRSRPIESIVAEAHQLAAEGVKELILISQ-ITTNYGLDLYG-RPRLADLLQALGEV 236

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
           + +  +R   ++P  +++ +I A+ D+  ++PYL LP+Q     +L++MNR   A    +
Sbjct: 237 E-IPWIRVHYAYPTGLTNEVISAYRDVPNVLPYLDLPLQHSHPEVLRAMNRPWQADVNER 295

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
           ++D+IRS  PD  + +  IVGFPGET   F      +++  +     F +SP  GT  + 
Sbjct: 296 LLDQIRSQLPDAVLRTTLIVGFPGETQQQFEHLASFLERQRFDHVGVFTFSPEQGTAAAE 355

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SP 433
           + + VD ++   R   L    +    + N   VG+ ++ LIE+H    G ++GR    +P
Sbjct: 356 LPDPVDADIAMARKDRLMTLQQPISAAANARWVGRTVDALIEQHNPANGAMIGRCGRFAP 415

Query: 434 WLQSVVLNSKNHN-----IGDIIKVRITDVKISTLYGELV 468
            +   V      +      G +I V+IT   I  L  E+V
Sbjct: 416 EVDGEVHIEPRADGLQAAPGTMIPVQITGSDIYDLRAEIV 455


>gi|238924037|ref|YP_002937553.1| MiaB-like tRNA modifying enzyme YliG [Eubacterium rectale ATCC
           33656]
 gi|238875712|gb|ACR75419.1| MiaB-like tRNA modifying enzyme YliG [Eubacterium rectale ATCC
           33656]
 gi|291524773|emb|CBK90360.1| SSU ribosomal protein S12P methylthiotransferase [Eubacterium
           rectale DSM 17629]
          Length = 441

 Score =  384 bits (987), Expect = e-104,   Method: Composition-based stats.
 Identities = 133/450 (29%), Positives = 217/450 (48%), Gaps = 18/450 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC  N+ DS  M  M  + G E  +    AD+I++N+C     A E+  + + 
Sbjct: 2   KLLFISLGCDKNLVDSEYMIGMLANDGIEMTDDETQADIIIVNSCCFIGDAKEESINTIL 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +   K      G    ++V GC+AQ   +EI +  P V+ ++G  +Y  + E +     
Sbjct: 62  EMAQYKE----TGKCKSLIVTGCLAQRYKDEIFKEIPEVDAILGTNSYDTIVEAVHETLE 117

Query: 146 GKRVVDTDYSVEDKFERLS-IVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
             R     YS     E L  I         G  A+L I EGC+K CT+CV+P  RG   S
Sbjct: 118 KHR-----YSNLHTLEGLPSIKTKRIVTTGGHFAYLKIAEGCNKNCTYCVIPSVRGRYRS 172

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
             +  ++++A+ L++ G  E+ L+ Q      G  L GEK +   LL  L++I GL  +R
Sbjct: 173 VPMEDLIEQAKSLVEQGAKELILVAQETT-LYGVDLYGEK-SLHKLLDELNKISGLFWIR 230

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
               +P ++ D LI++    + +  YL +P+Q  +D IL+ M R+ T  E  + I  +R 
Sbjct: 231 IMYCYPEEIYDELIESMIKDEKVCHYLDMPIQHCNDDILRRMGRKTTKAELMERIRMLRE 290

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             PDI + +  I GFPGET D+    M  V+ + + +  +F YSP  GT  + M +Q+DE
Sbjct: 291 RIPDITLRTTLICGFPGETQDNHEELMQFVNDMEFDRLGAFTYSPEEGTKAAAMPDQIDE 350

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVL 440
           ++KA+    + +   E     N+   G+ + V IE    ++   +GR+    P +   + 
Sbjct: 351 DIKADWQADVMELEEEVIFDKNETLKGKELYVFIEGKVADENAYIGRTYRDAPNVDGYIF 410

Query: 441 NSKNHNI--GDIIKVRITDVKISTLYGELV 468
            + +  +  GDI KV +T      L GELV
Sbjct: 411 INTDETLMTGDICKVMVTGAYEYDLIGELV 440


>gi|205352105|ref|YP_002225906.1| ribosomal protein S12 methylthiotransferase [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|238066622|sp|B5R840|RIMO_SALG2 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|205271886|emb|CAR36726.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|326627147|gb|EGE33490.1| putative FeS oxidoreductase [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
          Length = 441

 Score =  384 bits (987), Expect = e-104,   Method: Composition-based stats.
 Identities = 131/455 (28%), Positives = 220/455 (48%), Gaps = 34/455 (7%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC  N+ DS R+     ++GY+ V   DDAD++++NTC   + A ++    +G
Sbjct: 9   KIGFVSLGCPKNLVDSERILTELRTEGYDVVPRYDDADMVIVNTCGFIDSAVQESLEAIG 68

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                         +  V+V GC+  A+ ++I    P V  + GP +Y ++ + +     
Sbjct: 69  EA---------LNENGKVIVTGCLG-AKEDQIREVHPKVLEITGPYSYEQVLQHVHHY-- 116

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                       + F  L + + G        A+L I EGC+  CTFC++P  RG  +SR
Sbjct: 117 ------VPKPKHNPFLSL-VPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGDLVSR 169

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNA------WRGKGLDGE--KCTFSDLLYSLSEI 257
            +  V+ EA++L+D GV EI ++ Q+ +A       R    +GE  K +   L   LS++
Sbjct: 170 PIGDVLSEAKRLVDAGVKEILVISQDTSAYGVDVKHRTGFHNGEPVKTSMVSLCEQLSKL 229

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
               RL Y   +P       + A G    ++PYL +P+Q  S RILK M R  +      
Sbjct: 230 GVWTRLHYVYPYPHVDDVIPLMAEG---KILPYLDIPLQHASPRILKLMKRPGSVDRQLA 286

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
            I + R + P++ + S FIVGFPGET++DF+  +D + +    +   FKYSP  G   + 
Sbjct: 287 RIKQWREICPELTLRSTFIVGFPGETEEDFQMLLDFLKEARLDRVGCFKYSPVEGAGANE 346

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPWL 435
           + +QV E VK ER     +  ++         VG+ I V++++  +E   G+ +  +P +
Sbjct: 347 LPDQVPEEVKEERWNRFMQLQQQISAERLQEKVGREILVIVDEVDEEGAIGRSMADAPEI 406

Query: 436 QS-VVLNSK-NHNIGDIIKVRITDVKISTLYGELV 468
              V LN + N   GDI++V++ +     L+G  V
Sbjct: 407 DGAVYLNGETNVKPGDIVRVKVENADEYDLWGSRV 441


>gi|267992608|gb|ACY87493.1| putative FeS oxidoreductase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
          Length = 441

 Score =  384 bits (987), Expect = e-104,   Method: Composition-based stats.
 Identities = 130/455 (28%), Positives = 219/455 (48%), Gaps = 34/455 (7%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC  N+ DS R+     ++GY+ V   DDAD++++NTC   + A ++    +G
Sbjct: 9   KIGFVSLGCPKNLVDSERILTELRTEGYDVVPRYDDADMVIVNTCGFIDSAVQESLEAIG 68

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                         +  V+V GC+  A+ ++I    P V  + GP +Y ++ + +     
Sbjct: 69  EA---------LNENGKVIVTGCLG-AKEDQIREVHPKVLEITGPHSYEQVLQHVHHY-- 116

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                       + F  L + + G        A+L I EGC+  CTFC++P  RG  +SR
Sbjct: 117 ------VPKPKHNPFLSL-VPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGDLVSR 169

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNA------WRGKGLDGE--KCTFSDLLYSLSEI 257
            +  V+ EA++L+D GV EI ++ Q+ +A       R    +GE  K +   L   LS++
Sbjct: 170 PIGDVLSEAKRLVDAGVKEILVISQDTSAYGVDVKHRTGFHNGEPVKTSMVSLCEQLSKL 229

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
               RL Y   +P       + A G    ++PYL +P+Q  S RILK M R  +      
Sbjct: 230 GVWTRLHYVYPYPHVDDVIPLMAEG---KILPYLDIPLQHASPRILKLMKRPGSVDRQLA 286

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
            I + R + P++ + S FIVGFP ET++DF+  +D + +    +   FKYSP  G   + 
Sbjct: 287 RIKQWREICPELTLRSTFIVGFPAETEEDFQMLLDFLKEARLDRVGCFKYSPVEGAGANE 346

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPWL 435
           + +QV E VK ER     +  ++         VG+ I V++++  +E   G+ +  +P +
Sbjct: 347 LPDQVPEEVKEERWNRFMQLQQQISAERLQEKVGREILVIVDEVDEEGAIGRSMADAPEI 406

Query: 436 QS-VVLNSK-NHNIGDIIKVRITDVKISTLYGELV 468
              V LN + N   GDI++V++ +     L+G  V
Sbjct: 407 DGAVYLNGETNVKPGDIVRVKVENADEYDLWGSRV 441


>gi|255524216|ref|ZP_05391175.1| MiaB-like tRNA modifying enzyme YliG [Clostridium carboxidivorans
           P7]
 gi|296185337|ref|ZP_06853747.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Clostridium
           carboxidivorans P7]
 gi|255512041|gb|EET88322.1| MiaB-like tRNA modifying enzyme YliG [Clostridium carboxidivorans
           P7]
 gi|296050171|gb|EFG89595.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Clostridium
           carboxidivorans P7]
          Length = 446

 Score =  384 bits (987), Expect = e-104,   Method: Composition-based stats.
 Identities = 138/448 (30%), Positives = 224/448 (50%), Gaps = 18/448 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +  + S GC  N  DS  +     +   E VN    AD+I++NTC   E + ++    + 
Sbjct: 5   KVGLISLGCDKNRIDSEIILSNIKANN-EIVNDAKKADIIIVNTCGFIETSKQESIDTIL 63

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +   KN         L+VV GC+ Q  G+E++   P ++V++G   Y +L E +++   
Sbjct: 64  EMAKYKNKY----NCKLLVVTGCLTQRYGKELMELMPEIDVMLGVNDYDKLNESIDKCIK 119

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                +  YS E K   ++  +         TA++ I EGC+ FCT+C++P  RG   SR
Sbjct: 120 NSE--EKVYSCEYKDAGINEGERIL-TTPSHTAYIRIAEGCNNFCTYCIIPKIRGKYRSR 176

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           S+  ++ EA+ L   GV EI L+ Q+     G  + G+K   S+L+  LS+I+ +  +R 
Sbjct: 177 SMENIIKEAQSLAQQGVKEIILVAQDTT-RYGTDIYGKKA-LSELIRKLSKIENIHWIRI 234

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
              +P ++++ LI        +  YL +P+Q  S+ ILK+M RR T  E    I+++R  
Sbjct: 235 LYCYPEEITEELIDEIATNTKVCKYLDIPLQHISNNILKAMGRRGTKEEILNNINKLREK 294

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
             +I + +  IVGFPGET++DF+   D +      +   FKYS   GTP + M  Q+DE 
Sbjct: 295 VKNIVLRTSIIVGFPGETEEDFQELKDFIKDEKLDKLGVFKYSREDGTPAALMKNQIDEK 354

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQS-VVL 440
           VK  R   L    +E     N   +G++ EV++E  GKE+ +  GR    +P +   V  
Sbjct: 355 VKESREEELMSIQQEISKQINSNKIGRVYEVIVE--GKEEEEWYGRNYEMTPEIDGLVYF 412

Query: 441 NSKNHN-IGDIIKVRITDVKISTLYGEL 467
           N  N+  IG I+ V+IT      L G +
Sbjct: 413 NCDNNLEIGSIVNVKITHSLEYDLIGVV 440


>gi|168240726|ref|ZP_02665658.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|194448215|ref|YP_002044882.1| ribosomal protein S12 methylthiotransferase [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|238066590|sp|B4TCV0|RIMO_SALHS RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|194406519|gb|ACF66738.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|205339895|gb|EDZ26659.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
          Length = 441

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 131/455 (28%), Positives = 220/455 (48%), Gaps = 34/455 (7%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC  N+ DS R+     ++GY+ V   DDAD++++NTC   + A ++    +G
Sbjct: 9   KIGFVSLGCPKNLVDSERILTELRTEGYDVVPRYDDADMVIVNTCGFIDSAVQESLEAIG 68

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                         +  V+V GC+  A+ ++I    P V  + GP +Y ++ + +     
Sbjct: 69  EA---------LNENGKVIVTGCLG-AKEDQIREVHPKVLEITGPHSYEQVLQHVHHY-- 116

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                       + F  L + + G        A+L I EGC+  CTFC++P  RG  +SR
Sbjct: 117 ------VPKPKHNPFLSL-VPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGDLVSR 169

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNA------WRGKGLDGE--KCTFSDLLYSLSEI 257
            +  V+ EA++L+D GV EI ++ Q+ +A       R    +GE  K +   L   LS++
Sbjct: 170 PIGDVLSEAKRLVDAGVKEILVISQDTSAYGVDVKHRTGFHNGEPVKTSMVSLCEQLSKL 229

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
               RL Y   +P       + A G    ++PYL +P+Q  S RILK M R  +      
Sbjct: 230 GVWTRLHYVYPYPHVDDVIPLMAEG---KILPYLDIPLQHASPRILKLMKRPGSVDRQLA 286

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
            I + R + P++ + S FIVGFPGET++DF+  +D + +    +   FKYSP  G   ++
Sbjct: 287 RIKQWREICPELTLRSTFIVGFPGETEEDFQMLLDFLKEARLDRVGCFKYSPVEGAGAND 346

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPWL 435
           +  QV E VK ER     +  ++         VG+ I V++++  +E   G+ +  +P +
Sbjct: 347 LPAQVPEEVKEERWNRFMQLQQQISAERLQEKVGREILVIVDEVDEEGAIGRSMADAPEI 406

Query: 436 QS-VVLNSK-NHNIGDIIKVRITDVKISTLYGELV 468
              V LN + N   GDI++V++ +     L+G  V
Sbjct: 407 DGAVYLNGETNVKPGDIVRVKVENADEYDLWGSRV 441


>gi|146296852|ref|YP_001180623.1| RNA modification protein [Caldicellulosiruptor saccharolyticus DSM
           8903]
 gi|145410428|gb|ABP67432.1| RNA modification enzyme, MiaB family [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 434

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 145/446 (32%), Positives = 248/446 (55%), Gaps = 17/446 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    + GC++N Y++  + + F   GYE V+   +AD+ V+NTC +   +  K    + 
Sbjct: 2   KIAFYTLGCKVNQYETQAIAETFERLGYEIVDFDQEADIYVINTCTVTNVSDRKSRQAIK 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R +       K   D +VVV GC  Q   +E+ ++   V+++VG +   ++ E +     
Sbjct: 62  RAK-------KTSPDSIVVVMGCYPQVYPQEV-QKIEGVDIIVGTRDREKIVEYVTEYLK 113

Query: 146 GKRVVDTDYS--VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            K+ +    +    D FE L I       +    AF+ I+EGC++FC++C++PY RG  +
Sbjct: 114 QKKKILAVNNEYKRDTFEELKISSFNERTR----AFIKIEEGCEQFCSYCIIPYARGSVV 169

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SRSLS ++DE ++L  NG  E  + G N++A  GK LD  K T  D++  +S+I+ + R+
Sbjct: 170 SRSLSSILDEVQRLASNGYKEFVITGINISA-YGKDLDY-KVTLVDVIEEISKIEKVRRI 227

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R ++  P  M +  IK    ++ L  +LHL +QSGSD+ILK MNR +T  EYRQI++ +R
Sbjct: 228 RLSSLEPIVMKEDFIKRLVKIEKLCHHLHLSLQSGSDKILKLMNRHYTTDEYRQIVEMVR 287

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
               D+A ++D IVGFPGE+D+DF  T++ V +IG+++   F++SP+ GT   NM  QV+
Sbjct: 288 GYWNDVAFTTDIIVGFPGESDEDFERTVEFVKEIGFSRIHVFRFSPKKGTNAYNMPYQVN 347

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
              K +R   L+   R+    F+    G+I++VLIE++   +G   G S      ++   
Sbjct: 348 SAEKEKRSEILKSVARKLSFGFHKKFEGKIVDVLIEENSSLEGYFEGYSGNYIRTLVPKT 407

Query: 444 NH-NIGDIIKVRITDVKISTLYGELV 468
               +G+I KV++ +     + G+++
Sbjct: 408 ESIRVGEIYKVKVKEAFEQYVIGDII 433


>gi|254160912|ref|YP_003044020.1| ribosomal protein S12 methylthiotransferase [Escherichia coli B
           str. REL606]
 gi|253972813|gb|ACT38484.1| predicted SAM-dependent methyltransferase [Escherichia coli B str.
           REL606]
          Length = 441

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 136/460 (29%), Positives = 224/460 (48%), Gaps = 35/460 (7%)

Query: 22  IVPQ-RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKV 80
           + PQ +    S GC  N+ DS R+     ++GY+ V S DDAD++++NTC   + A ++ 
Sbjct: 4   VTPQPKIGFVSLGCPKNLVDSERILTELRTEGYDVVPSYDDADMVIVNTCGFIDSAVQES 63

Query: 81  YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140
              +G              +  V+V GC+  A+ ++I    P V  + GP +Y ++ E +
Sbjct: 64  LEAIGEA---------LNENGKVIVTGCLG-AKEDQIREVHPKVLEITGPHSYEQVLEHV 113

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
                            + F  L + + G        A+L I EGC+  CTFC++P  RG
Sbjct: 114 HHY--------VPKPKHNPFLSL-VPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRG 164

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA------WRGKGLDGE--KCTFSDLLY 252
             +SR + +V+ EA++L+D GV EI ++ Q+ +A       R    +GE  K +   L  
Sbjct: 165 DLVSRPIGEVLSEAKRLVDAGVKEILVISQDTSAYGVDVKHRTGFHNGEPVKTSMVSLCE 224

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
            LS++    RL Y   +P       + A G    ++PYL +P+Q  S RILK M R  + 
Sbjct: 225 QLSKLGIWTRLHYVYPYPHVDDVIPLMAEG---KILPYLDIPLQHASPRILKLMKRPGSV 281

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
                 I + R + P++ + S FIVGFPGET++DF+  +D + +    +   FKYSP  G
Sbjct: 282 DRQLARIKQWREICPELILRSTFIVGFPGETEEDFQMLLDFLKEARLDRVGCFKYSPVEG 341

Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVG 430
              + + +QV E VK ER     +  ++         VG+ I V+I++  +E   G+ + 
Sbjct: 342 ADANALPDQVPEEVKEERWNRFMQLQQQISAERLQEKVGREILVIIDEVDEEGAIGRSMA 401

Query: 431 RSPWLQS-VVLNSK-NHNIGDIIKVRITDVKISTLYGELV 468
            +P +   V LN + N   GDI++V++       L+G  V
Sbjct: 402 DAPEIDGAVYLNGETNVKPGDILRVKVEHADEYDLWGSRV 441


>gi|145343353|ref|XP_001416312.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144576537|gb|ABO94605.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 492

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 153/488 (31%), Positives = 241/488 (49%), Gaps = 52/488 (10%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R ++++YGCQMNV DS  +  +  + G      + +A   ++NTC +R+ A  +V++ L 
Sbjct: 1   RVYIETYGCQMNVSDSDVVRSVLRAHGVATTEDLREATAALVNTCAVRDNAESRVWTRLR 60

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA-- 143
           +++ LK           V V GC+A+    ++L    + ++V GP  Y  +P LLE +  
Sbjct: 61  QLKALKRDA--GHALTTVGVLGCMAERLKAKLLETEDLADLVCGPDAYRDVPRLLENSTR 118

Query: 144 ----RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
                  +  ++   S+++ +  +  V           A++++  GCD  C FCVVP+TR
Sbjct: 119 RLSDLSEEHRMNVLLSLDETYADVRPVRRDVG---SPMAYVSVMRGCDNMCAFCVVPFTR 175

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------------------------ 235
           G E SR    VVDEAR LI  GV EITLLGQNVN++                        
Sbjct: 176 GRERSRPFESVVDEARGLIAEGVKEITLLGQNVNSYADAPMKATTSADDDPFAAYAKGFK 235

Query: 236 --RGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHL 293
                  +G + TF+DL+ +++ +   VR+R+T+ HP+D  D L++       +   LH+
Sbjct: 236 SVYKPKREGAR-TFADLISAVAGLDQEVRVRFTSPHPKDFPDDLLRVIAQTPNVCKQLHM 294

Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
           P QSGS   L+ M R +T   Y  +I R R + P +A+SSDFI GF GET+D+   T+ L
Sbjct: 295 PAQSGSTSTLERMRRGYTREVYLDLIKRAREMIPGVALSSDFISGFCGETEDEHAETLSL 354

Query: 354 VDKIGYAQAFSFKYSPRLGTPGSN-MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQ 412
           ++ + Y QAF F YS R  T  +  + + V E+VK  RL  +    R + +  N A VG+
Sbjct: 355 LEDVRYEQAFMFHYSLREKTHAARNLEDDVPEHVKKRRLAEVIATFRRRALEANAAEVGR 414

Query: 413 IIEVLIEKHGKEK--GKLVGRSPWLQSVVLNSKNH-----------NIGDIIKVRITDVK 459
              VL+E   K+    ++ GRS   + VV+  K               GD +  R+ +  
Sbjct: 415 THLVLVEGASKKDPEAQMSGRSDTGKRVVIQGKRAFSNSSGKEVDIKAGDYVVARVVEAG 474

Query: 460 ISTLYGEL 467
            STL    
Sbjct: 475 ASTLLATP 482


>gi|260597230|ref|YP_003209801.1| ribosomal protein S12 methylthiotransferase [Cronobacter turicensis
           z3032]
 gi|260216407|emb|CBA29484.1| Ribosomal protein S12 methylthiotransferase rimO [Cronobacter
           turicensis z3032]
          Length = 441

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 128/463 (27%), Positives = 220/463 (47%), Gaps = 34/463 (7%)

Query: 18  VDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA 77
           +   +   +    S GC  N+ DS R+     ++GY+ V   DDAD++++NTC   + A 
Sbjct: 1   MSNVMQQPKIGFVSLGCPKNLVDSERILTELRTEGYDVVPRYDDADMVIVNTCGFIDSAV 60

Query: 78  EKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLP 137
           ++    +G              +  V+V GC+  A+ ++I    P V  + GP +Y ++ 
Sbjct: 61  QESLEAIGEA---------LNENGKVIVTGCLG-AKEDQIREVHPKVLEITGPHSYEQVL 110

Query: 138 ELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197
           + +                 + F  L + + G        A+L I EGC+  CTFC++P 
Sbjct: 111 QHVHHY--------VPKPKHNPFLSL-VPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPS 161

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA------WRGKGLDGE--KCTFSD 249
            RG   SR +  V+ EA++L++ GV E+ ++ Q+ +A       R    +G   K +   
Sbjct: 162 MRGDLDSRPIGDVLAEAKRLVEAGVKELLVISQDTSAYGVDVKHRTGFWNGSPVKTSMVS 221

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
           L   L+++   VRL Y   +P       + A G    ++PYL +P+Q  S RILK M R 
Sbjct: 222 LCEQLAKLGVWVRLHYVYPYPHVDDVIPLMAEG---KILPYLDIPLQHASPRILKLMKRP 278

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369
            +       I + R + P++ + S FIVGFPGET++DF+  +D + +    +   FKYSP
Sbjct: 279 GSVDRQLARIKQWREICPELTLRSTFIVGFPGETEEDFQMLLDFLKEARLDRVGCFKYSP 338

Query: 370 RLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GK 427
             G   +++ +QV E VK ER        ++         VG+ I V+I++   E   G+
Sbjct: 339 VEGATANDLADQVPEEVKEERWNRFMALQQQISAERLQEKVGREILVIIDEVDDEGAIGR 398

Query: 428 LVGRSPWLQS-VVLNSK-NHNIGDIIKVRITDVKISTLYGELV 468
            +  +P +   V LN +     GD+++V++ +     L+G LV
Sbjct: 399 SMADAPEIDGAVYLNGETTLKPGDVVRVKVENADEYDLWGSLV 441


>gi|206579256|ref|YP_002239518.1| MiaB-like tRNA modifying enzyme YliG [Klebsiella pneumoniae 342]
 gi|288936365|ref|YP_003440424.1| RNA modification enzyme, MiaB family [Klebsiella variicola At-22]
 gi|290510579|ref|ZP_06549949.1| MiaB-like tRNA modifying enzyme YliG [Klebsiella sp. 1_1_55]
 gi|238066342|sp|B5XYQ3|RIMO_KLEP3 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|206568314|gb|ACI10090.1| MiaB-like tRNA modifying enzyme YliG [Klebsiella pneumoniae 342]
 gi|288891074|gb|ADC59392.1| RNA modification enzyme, MiaB family [Klebsiella variicola At-22]
 gi|289777295|gb|EFD85293.1| MiaB-like tRNA modifying enzyme YliG [Klebsiella sp. 1_1_55]
          Length = 441

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 132/455 (29%), Positives = 223/455 (49%), Gaps = 34/455 (7%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC  N+ DS R+     ++GY+ V + D+AD++++NTC   + A ++    +G
Sbjct: 9   KIGFVSLGCPKNLVDSERILTELRTEGYDVVPTYDNADMVIVNTCGFIDSAVQESLEAIG 68

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
               LK +         V+V GC+  A+ ++I    P V  + GP +Y ++ E +     
Sbjct: 69  EA--LKENGK-------VIVTGCLG-AKEDQIREVHPKVLEITGPHSYEQVLEHVHHY-- 116

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                 +     + F  L + + G        A+L I EGC+  CTFC++P  RG  +SR
Sbjct: 117 ------SPKPKHNPFLSL-VPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGDLVSR 169

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNA------WRGKGLDGE--KCTFSDLLYSLSEI 257
            + +V+ EA++L D GV E+ ++ Q+ +A       R    +G   K +   L   L+++
Sbjct: 170 PIGEVLAEAKRLADAGVKELLVISQDTSAYGVDVKHRTGFHNGMPVKTSMVSLCEELAKL 229

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
              VRL Y   +P       + A G    ++PYL +P+Q  S RILK M R  +A     
Sbjct: 230 GIWVRLHYVYPYPHVDDVIPLMAEG---KILPYLDIPLQHASPRILKLMKRPGSADRQLA 286

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
            I + R + PD+ + S FIVGFPGET++DF+  +D + +    +   FKYSP  G   + 
Sbjct: 287 RIKQWREICPDLTLRSTFIVGFPGETEEDFQMLLDFLKEARLDRVGCFKYSPVEGATANE 346

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPWL 435
           + +QV E VK ER     +  ++         VG+ I VL+++  +E   G+ +  +P +
Sbjct: 347 LADQVPEEVKEERWNRFMQLQQQISAERLQEKVGREILVLVDEVDEEGAIGRSMADAPEI 406

Query: 436 QS-VVLNSK-NHNIGDIIKVRITDVKISTLYGELV 468
              V LN +     GD+++V++       L+G  V
Sbjct: 407 DGAVYLNGETRVKPGDVVRVKVEHADEYDLWGTRV 441


>gi|167040267|ref|YP_001663252.1| MiaB-like tRNA modifying protein YliG [Thermoanaerobacter sp. X514]
 gi|256750808|ref|ZP_05491693.1| MiaB-like tRNA modifying enzyme YliG [Thermoanaerobacter
           ethanolicus CCSD1]
 gi|300914351|ref|ZP_07131667.1| MiaB-like tRNA modifying enzyme YliG [Thermoanaerobacter sp. X561]
 gi|307724413|ref|YP_003904164.1| MiaB-like tRNA modifying enzyme YliG [Thermoanaerobacter sp. X513]
 gi|238064963|sp|B0K1C1|RIMO_THEPX RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|166854507|gb|ABY92916.1| MiaB-like tRNA modifying enzyme YliG [Thermoanaerobacter sp. X514]
 gi|256750391|gb|EEU63410.1| MiaB-like tRNA modifying enzyme YliG [Thermoanaerobacter
           ethanolicus CCSD1]
 gi|300889286|gb|EFK84432.1| MiaB-like tRNA modifying enzyme YliG [Thermoanaerobacter sp. X561]
 gi|307581474|gb|ADN54873.1| MiaB-like tRNA modifying enzyme YliG [Thermoanaerobacter sp. X513]
          Length = 436

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 130/448 (29%), Positives = 225/448 (50%), Gaps = 20/448 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +   + S GC  N  DS +M  +   +GY  VN  + AD++++NTC   E A  +    +
Sbjct: 2   KNVGIISLGCHKNTIDSEKMLAILKEKGYNIVNDENKADILIINTCGFIEDAKRESIECI 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             +  LK  R+K      ++  GC+++   +E+L+  P ++ V+G   ++++ E++E+  
Sbjct: 62  IEMGKLKKHRLKY-----LIATGCLSERYNKELLKELPELDAVIGTGDFHKIAEVIEKIE 116

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            GK V++  ++     E +  +           A+L I EGC   C+FC++P  RG   S
Sbjct: 117 KGKTVLEYGHANLLNDEGIQRI----LTTPNYYAYLKIAEGCSNACSFCIIPRLRGRYRS 172

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R +  ++ EA +L+  GV E+ L+ Q+     G  +  +K     LL  +S+I GL  +R
Sbjct: 173 RKMEDILREAEELVKKGVKELILIAQDTT-KYGVDVY-KKFMLPQLLKEISKIDGLKWIR 230

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
              ++P  +++ L++   + + ++ Y+ +P+Q   D +LK MNR     +  ++I R+RS
Sbjct: 231 LLYAYPDSVTEELVEEIKNNEKIVKYIDIPLQHSHDEVLKRMNRNTNKQKIEEVISRLRS 290

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             P + I + F+VGFPGET+++F      V +  + +   F YS   GT    M  Q+ +
Sbjct: 291 -IPYMVIRTTFMVGFPGETEEEFEDLKQFVKEKRFERVGVFTYSREEGTKSYYMKPQIKK 349

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVL 440
           +VK +R   L +  +E     N + VG+ +EVLIE    E G   GRS    P +  VV 
Sbjct: 350 SVKIKRQQELMEIQKEISYQHNLSKVGKQLEVLIEGF--EDGIYYGRSYMDAPEIDGVVY 407

Query: 441 --NSKNHNIGDIIKVRITDVKISTLYGE 466
             + K    GD +   ITD     L GE
Sbjct: 408 VKSDKKLKAGDFVVATITDAYEYDLVGE 435


>gi|332879760|ref|ZP_08447450.1| ribosomal protein S12 methylthiotransferase RimO [Capnocytophaga
           sp. oral taxon 329 str. F0087]
 gi|332682279|gb|EGJ55186.1| ribosomal protein S12 methylthiotransferase RimO [Capnocytophaga
           sp. oral taxon 329 str. F0087]
          Length = 434

 Score =  383 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 133/460 (28%), Positives = 216/460 (46%), Gaps = 33/460 (7%)

Query: 17  IVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA 76
           +  + I      V + GC  NVYDS  +     + G   V+  +  +++V+NTC     A
Sbjct: 1   MRTRSIKKNTINVVTLGCSKNVYDSEVLMGQLKAGGKNVVHEQEG-NIVVINTCGFINNA 59

Query: 77  AEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL 136
            E+  + +      K +    G    V V GC+++    ++ +  P V+   G       
Sbjct: 60  KEESINTILDYVQQKEA----GLIDKVFVMGCLSERYKPDLEKEIPDVDQYFGTSEL--- 112

Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
           P LL       +V+  DY  E   ERL+     Y       A+L I EGCD+ C+FC +P
Sbjct: 113 PALL-------KVLGADYKHELIGERLTTTPKNY-------AYLKISEGCDRPCSFCAIP 158

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256
             RG  IS  +  +V EA KL   GV E+ L+ Q++  + G  L  +K   +DLL +L +
Sbjct: 159 LMRGAHISTPIEALVTEAEKLAAKGVKELILIAQDIT-YYGLDLY-KKRALADLLRALVK 216

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           ++G+  +R   + P      +I+   +   +  YL +P+Q  SD IL SM R  T  +  
Sbjct: 217 VEGIEWIRIHYAFPTGFPMDVIEVMKEEPKICNYLDIPLQHISDPILASMKRGTTQEKTT 276

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
           +++ + R   P++AI +  IVG+PGET  DF A    V ++ + +   F YS    T   
Sbjct: 277 KLLKKFREAMPEMAIRTTLIVGYPGETQADFEALKFFVKEMRFDRLGCFTYSHEENTTAY 336

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQ 436
           ++ + V E VK  R   + +   +     N   VG+    LI++  KE    VGR+ +  
Sbjct: 337 DLEDDVPEEVKLARANEIMEIQSQISWELNQQKVGKTFRCLIDR--KEGNYFVGRTEYDS 394

Query: 437 S-----VVLNSKNHNI--GDIIKVRITDVKISTLYGELVV 469
                 V++++K H +  GD ++V+I D     LYGE VV
Sbjct: 395 PDVDNEVLIDAKKHYVKTGDFVEVKIIDATDYDLYGEPVV 434


>gi|66807387|ref|XP_637416.1| hypothetical protein DDB_G0287079 [Dictyostelium discoideum AX4]
 gi|74853166|sp|Q54KV4|CK5P1_DICDI RecName: Full=CDK5RAP1-like protein
 gi|60465830|gb|EAL63904.1| hypothetical protein DDB_G0287079 [Dictyostelium discoideum AX4]
          Length = 607

 Score =  383 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 153/505 (30%), Positives = 255/505 (50%), Gaps = 48/505 (9%)

Query: 8   IGVAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVL 67
             +   +S + +     ++ ++++YGCQMNV D   +  +  S GY   N  + AD++ L
Sbjct: 90  YELPPYLSSLPNDKGNGRKVWIETYGCQMNVSDEEVICSIMKSSGYTISNDFNTADIVFL 149

Query: 68  NTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVV 127
           NTC IRE A  K++  L  +R ++  + +   +L+V V GC+A+   E++L     V++V
Sbjct: 150 NTCSIRENAEAKIWLRLTELRAIRRKQGR--PNLIVGVLGCMAERLKEKLLESDMKVDIV 207

Query: 128 VGPQTYYRLPELLERARFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEG 185
           VGP  Y  LP LL     G++   ++   S ++ +  +  V         V+A+++I  G
Sbjct: 208 VGPDAYRSLPSLLATLEDGEQQTAINVILSADETYADIKPVR---KSDNQVSAYVSIMRG 264

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG-------- 237
           C+  C++C+VP+TRG E SR +  ++ E + L D G  EITLLGQNVN++          
Sbjct: 265 CNNMCSYCIVPFTRGRERSRPIDSILREVKDLSDQGFKEITLLGQNVNSFNYYEESNNNN 324

Query: 238 -----------------KGLDGEKC---------TFSDLLYSLSEIKGLVRLRYTTSHPR 271
                            K  +G K          TF+ L+  +S++   +R+R+T+ HP+
Sbjct: 325 NENFIDTQKNKLELESLKPREGFKTIYKSPKKGITFTKLMELVSKVDPEIRIRFTSPHPK 384

Query: 272 DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAI 331
           D  D L++   +   +   LH+P QSGS ++L+SM R +T   Y ++ID I+ V P  AI
Sbjct: 385 DFPDDLLELIKNQPNICKQLHIPAQSGSSKVLESMRRGYTRESYIELIDTIKRVLPGCAI 444

Query: 332 SSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN-MLEQVDENVKAER 390
           SSDFI GF GE+D D   T+ L++ +GY  AF F YS R  T     + + V   +K  R
Sbjct: 445 SSDFISGFCGESDQDHNETISLMEYVGYENAFMFMYSLREKTHAHRQLKDDVPTTLKNSR 504

Query: 391 LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVLNSK----NH 445
           L  +     ++    N   +G    VL++   K   K  VGR+   + V++++     + 
Sbjct: 505 LTQVVDTFYKRLKEKNQLEIGNHHLVLVDGFSKRSEKDFVGRTDTNKKVLISNDIENQDI 564

Query: 446 NIGDIIKVRITDVKIS-TLYGELVV 469
            +G+   V I       TL G+ ++
Sbjct: 565 KVGEYYIVEIIKGDSEVTLKGKPIM 589


>gi|323448466|gb|EGB04364.1| hypothetical protein AURANDRAFT_32629 [Aureococcus anophagefferens]
          Length = 494

 Score =  383 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 175/468 (37%), Positives = 260/468 (55%), Gaps = 27/468 (5%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
             + + + + GCQMN  DS R+E      G         A+++VLNTC IRE A  KVYS
Sbjct: 26  AGKTYAMVTMGCQMNAADSERLEGSLRQLGLVEAPDPKLANVVVLNTCSIREHAETKVYS 85

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
           ++G     K    + G D+ +VVAGCVAQ EG  +LRR+P V+VV+GPQ   RLP++LER
Sbjct: 86  YVGPQAKRK----RNGEDVTIVVAGCVAQQEGARLLRRAPEVDVVMGPQYANRLPDVLER 141

Query: 143 AR-FGKRVVDTDYSVEDKFERLSI------VDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
           A   G++V  T  S        +             R  GV A++TI  GC++ CT+CVV
Sbjct: 142 AMVHGEQVAATSASYGATSTSSAASGAALDAPTAPRRASGVVAWVTITHGCNERCTYCVV 201

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
           P TRG+E SR+  +++ E   L + G  E+TLLGQNV+A  G+ +   +  F DLL +++
Sbjct: 202 PNTRGVEQSRAPDEILAEIDDLGNRGYREVTLLGQNVDA-YGRDMRPRR-HFHDLLAAVA 259

Query: 256 EIK---GLVRLRYTTSHPRDMSDCLIKAHGDL-DVLMPYLHLPVQSGSDRILKSMNRRHT 311
           ++    G +R+R+ TSHPR ++D +I A  D  DV+MP  H+P QSG D +L+ M R +T
Sbjct: 260 DVARRHGDMRVRFVTSHPRYITDAVIDAVADHGDVIMPVFHMPAQSGDDAMLRLMGRGYT 319

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
           A  YR I+ +IR   PD  ISSDFIVG PGE++  F AT+ L+D + +    +  YSPR 
Sbjct: 320 ADRYRSIVAKIRKRLPDATISSDFIVGCPGESEAAFEATLALMDDVEFDACMTAAYSPRP 379

Query: 372 GTPGSNMLEQV--------DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG- 422
           GTP ++             D++VK +RL  +  K         +  +G++  VL+E+   
Sbjct: 380 GTPMAHWDGAADAFATLGCDDDVKEDRLRRINAKSDAHVKRRAERYLGRVEPVLVEQRNT 439

Query: 423 KEKGKLVGRSPWLQSVVLNSK-NHNIGDIIKVRITDVKISTLYGELVV 469
           +   ++VGR+   + V      +  +G  + V IT+    +L G  VV
Sbjct: 440 RAPTQVVGRTRGNKLVFFEGDADDLVGRTVDVEITEANTFSLVGVRVV 487


>gi|281207324|gb|EFA81507.1| hypothetical protein PPL_05496 [Polysphondylium pallidum PN500]
          Length = 616

 Score =  383 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 158/494 (31%), Positives = 249/494 (50%), Gaps = 49/494 (9%)

Query: 16  QIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREK 75
           +I D     +  FV+SYGCQMN  D+  +  +  S GY    S   AD++ LNTC IRE 
Sbjct: 116 EIADASGEGRSVFVESYGCQMNFADTEIVYSVMRSAGYTVAESAKSADIVFLNTCAIREN 175

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135
           A +K++  L  +R  K  +       ++ V GC+A+   +++L  +  V++VVGP  Y  
Sbjct: 176 AEDKIWFRLSELRKQKRRQ-----GTVIGVLGCMAERLKQKLLESNKSVDLVVGPDAYRS 230

Query: 136 LPELLERARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCV 194
           LP LL R   G +  ++   S ++ +  ++ +        GV+A+++I  GC+  C++C+
Sbjct: 231 LPSLLSRIEDGDQTAINVMLSADETYADIAPIRTN---SNGVSAYVSIMRGCNNMCSYCI 287

Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL-------------- 240
           VP+TRG E SRS+  +VDE ++L  +G  EITLLGQNVN++                   
Sbjct: 288 VPFTRGRERSRSIHSIVDEVKQLSADGYKEITLLGQNVNSYNFIDEVVEPLAEKKEKEVL 347

Query: 241 ------------DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLM 288
                            TF++L+  +S +   +R+R+T+ HP+D  D LI+       + 
Sbjct: 348 TPREGFNTIYKSPKRGVTFTELMDKVSLVDPEMRIRFTSPHPKDFPDALIELIKQRPNIC 407

Query: 289 PYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFR 348
             LH+P QSG+  +L+ M R ++   Y Q+ID IR   PD AISSDFI GF GET+ + R
Sbjct: 408 QQLHIPAQSGNTEVLERMRRGYSRESYLQLIDLIRRELPDAAISSDFISGFCGETESEHR 467

Query: 349 ATMDLVDKIGYAQAFSFKYSPRLGTPGSN-MLEQVDENVKAERLLCLQKKLREQQVSFND 407
            T+ L++ +GY  AF F YS R  T     M + VD   K  RL  +           + 
Sbjct: 468 DTISLLNAVGYENAFMFMYSLREKTHAHRTMADDVDVETKTRRLQEVIDTFYSNLRGKSK 527

Query: 408 ACVGQIIEVLIEKHGKE-KGKLVGRSPWLQSVVLNS------------KNHNIGDIIKVR 454
           A +G+   VL+++  +  K   VGR+   + V++ +            ++   GD I V 
Sbjct: 528 AEIGRRHLVLVDRISRRSKDHFVGRTDTNKKVIIPNTPIVNPSNSNNMEDIKPGDYIMVD 587

Query: 455 ITDVKISTLYGELV 468
           I D    TL G+ +
Sbjct: 588 IVDGSEITLQGKPI 601


>gi|258620505|ref|ZP_05715543.1| conserved hypothetical protein [Vibrio mimicus VM573]
 gi|258587384|gb|EEW12095.1| conserved hypothetical protein [Vibrio mimicus VM573]
          Length = 470

 Score =  383 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 130/466 (27%), Positives = 213/466 (45%), Gaps = 36/466 (7%)

Query: 13  MVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHI 72
           +  Q         +    S GC  N+ DS R+     ++GYE VNS  D+D++++NTC  
Sbjct: 21  IAEQSQSSQTTGNKIGFVSLGCPKNLVDSERILTQLRTEGYEIVNSYHDSDVVIVNTCGF 80

Query: 73  REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT 132
            + A ++    +G    LK +         V+V GC+   E +EI +  P V  + GP  
Sbjct: 81  IDSAVQESLDTIGEA--LKENGK-------VIVTGCLGARE-DEIRQVHPNVLGITGPHA 130

Query: 133 YYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTF 192
           Y  + E + +               + F  L + D G        A+L I EGC+  CTF
Sbjct: 131 YQNVLEHVHQY--------APKPAHNPFTSL-VPDHGVKLTPKHYAYLKISEGCNHRCTF 181

Query: 193 CVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE--------- 243
           C++P  RG  +SR + +++ EA +L + GV E+ ++ Q+ +A  G               
Sbjct: 182 CIIPSMRGDLVSRPVGEIIGEAERLKNAGVKELLVISQDTSA-YGVDTKHSLGFASGSPV 240

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
           +     L   L ++   VRL Y   +P       + A G    ++PYL +P Q  S R+L
Sbjct: 241 RHNIKALSEELGKMGIWVRLHYVYPYPHVDEIIPLMAEG---KVLPYLDIPFQHASPRVL 297

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           K M R   A    + I + R + P++ I S FIVGFPGET++DF+  +D + +    +  
Sbjct: 298 KMMKRPGQAERTLERIKKWREICPELVIRSTFIVGFPGETEEDFQILLDWLKEAQLDRVG 357

Query: 364 SFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK 423
            FKYSP  G   + + +Q+ E VK +R        +E   +     +G  + VLI++  +
Sbjct: 358 CFKYSPVEGAAANEIEDQIPEEVKQDRFERFMLVQQEISAAKLQKRIGSTMRVLIDEVDE 417

Query: 424 EK--GKLVGRSPWLQS-VVLNSK-NHNIGDIIKVRITDVKISTLYG 465
           E   G+    +P +   V LN + N   G+++ V I       L+G
Sbjct: 418 EGAIGRTYADAPEIDGLVYLNGETNLKPGELVNVVIEHADEYDLWG 463


>gi|309789580|ref|ZP_07684161.1| RNA modification enzyme, MiaB family [Oscillochloris trichoides
           DG6]
 gi|308228316|gb|EFO81963.1| RNA modification enzyme, MiaB family [Oscillochloris trichoides
           DG6]
          Length = 450

 Score =  383 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 152/454 (33%), Positives = 235/454 (51%), Gaps = 27/454 (5%)

Query: 19  DQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAE 78
           D     +R++V + GCQMN+ DS R+E      GY      + A  IVLN+C +R  A E
Sbjct: 16  DATPRSRRYYVWTVGCQMNISDSERLEAALQGVGYSPAARPEQASFIVLNSCSVRASAEE 75

Query: 79  KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRR-SPIVNVVVGPQTYYRLP 137
           ++   LG +  +K    +E  D +VV+ GC+       I  R  P+V+  V P     + 
Sbjct: 76  RIIGKLGELVRVK----RENPDTIVVLWGCMVGPHNRSIFERQLPMVDHFVSPSAVDAVV 131

Query: 138 ELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197
            L           +  Y++++    L + D  +     V   + IQ GC+  C++CV+P 
Sbjct: 132 AL---------APNPIYTLDE--PALPVRDAAHP---PVAVHVPIQYGCNMRCSYCVIPQ 177

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257
            RG E SRSL ++V E  +++D+G  EI LLGQ V++W G  L G +   +DL+ ++  I
Sbjct: 178 RRGRERSRSLDEIVAEVTRIVDHGAREIVLLGQIVDSW-GHDLPG-RPQLADLIRAVHAI 235

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
            GL+RLR+ TSHP  M+D LI+    L   MP ++LPVQ+GSDR+L  M R +T   YR 
Sbjct: 236 PGLLRLRFLTSHPAWMTDHLIETVASLPRCMPEINLPVQAGSDRVLALMQRGYTTARYRD 295

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
           +I RIR+  P I++++D IVG PGE++ DF  T+ L ++I + +     +S R GT  + 
Sbjct: 296 LIARIRAAIPHISLTTDIIVGHPGESEADFAQTLALCEEIRFDKIHIAAFSARPGTVAAE 355

Query: 378 MLEQ----VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSP 433
                   V E  K  R + +++         +   +GQ +EVL+E   +  GK  GRSP
Sbjct: 356 QEADPSLAVSEEQKQARRIAMEQLHERIATQRSAMLLGQTVEVLVEGESR--GKWRGRSP 413

Query: 434 WLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
             + V  +      G + +V IT     +L G L
Sbjct: 414 GNKLVFFSDAADWTGRLARVHITQTSPWSLQGRL 447


>gi|33862448|ref|NP_894008.1| Fe-S oxidoreductase [Prochlorococcus marinus str. MIT 9313]
 gi|81577992|sp|Q7V8Z5|RIMO_PROMM RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|33640561|emb|CAE20350.1| possible Fe-S oxidoreductase [Prochlorococcus marinus str. MIT
           9313]
          Length = 472

 Score =  383 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 129/452 (28%), Positives = 216/452 (47%), Gaps = 26/452 (5%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA-AEKVYSFLG 85
                 GC+ N  D+  M  +    GY   +  +DA ++V+NTC   + A  E V + +G
Sbjct: 24  VAFAHLGCEKNRVDTEHMLGLLTEAGYSVSSDENDAAVVVVNTCSFIQDAREESVRTLIG 83

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                K           +++AGC+AQ   EE+L   P    +VG   Y  + ++L+R   
Sbjct: 84  LAEQGKE----------LIIAGCLAQHFQEELLESIPEAKAIVGTGDYQHIVDVLKRVEA 133

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G+RV           +                A+L + EGCD  C FC++P  RG + SR
Sbjct: 134 GERVNHVSEFPTFVGDETLPRQ---RTTDQAVAYLKVAEGCDYRCAFCIIPKLRGDQRSR 190

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            +  +V EA +L + GV E+ L+ Q +    G  L G K  F++LL +L E+  +  +R 
Sbjct: 191 PVESIVTEAHQLAEQGVQELILISQ-ITTNYGLDLYG-KPKFAELLQALGEVD-IPWVRV 247

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
             ++P  ++  ++ A+ ++  ++ YL LP+Q     +L++MNR        +++DRIR  
Sbjct: 248 HYAYPTGLTPEVLAAYREVPNVLRYLDLPLQHSHPEVLRAMNRPWQTDVNERLLDRIREQ 307

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            PD  + +  IVGFPGET+D F      +++  +     F +SP  GT  +++ ++VD +
Sbjct: 308 LPDAVLRTTLIVGFPGETEDHFNHLAAFIERQRFDHVGVFTFSPEDGTAAADLPDRVDPS 367

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVVL- 440
           + A R   L    +      N   VG+ I+VLIE+H  E G ++GR    +P +   VL 
Sbjct: 368 IAAARKDRLMALQQPISAERNQRWVGRTIDVLIEQHNPETGAMIGRCDRFAPEVDGEVLV 427

Query: 441 ----NSKNHNIGDIIKVRITDVKISTLYGELV 468
                    + G ++ V IT   +  L G+LV
Sbjct: 428 LPSEKGLQASPGTMVPVFITGSDVYDLTGQLV 459


>gi|260887121|ref|ZP_05898384.1| RNA modification enzyme, MiaB family [Selenomonas sputigena ATCC
           35185]
 gi|330839106|ref|YP_004413686.1| Ribosomal protein S12 methylthiotransferase rimO [Selenomonas
           sputigena ATCC 35185]
 gi|260863183|gb|EEX77683.1| RNA modification enzyme, MiaB family [Selenomonas sputigena ATCC
           35185]
 gi|329746870|gb|AEC00227.1| Ribosomal protein S12 methylthiotransferase rimO [Selenomonas
           sputigena ATCC 35185]
          Length = 442

 Score =  383 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 125/450 (27%), Positives = 209/450 (46%), Gaps = 17/450 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC  N+ D+  M  +    G E      +A++I++NTC   + A E+  + + 
Sbjct: 2   KAGFISLGCAKNLVDTEVMLGILQDNGIELTPDPAEAEIIIVNTCAFIQSAKEESITTVL 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +   K      G    +++AGC+ +   +E+L   P  + ++G   + R+ E +     
Sbjct: 62  NMAEYKE----TGCCRSLIIAGCLGERYHQELLDDMPEADAIIGTGAWNRIMEAVRETLA 117

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G R+V    +      +   +          +A++ I EGCD  C FC +P  RG   SR
Sbjct: 118 GNRIVLAGENEIVYDAKTPRI----LTTPAYSAYVKIAEGCDHRCAFCAIPLIRGRFRSR 173

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           S+  +  E  +L   GV EI L+ Q+   + GK + GE  + + LL  L +I+ +  +R 
Sbjct: 174 SMDDIKREVTRLAAEGVREIILVAQDST-YYGKDIYGEP-SLARLLQELVKIEKVEWMRV 231

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
              +P++ +D LI        +  Y+ LP+Q   + ILKSM R  T  E   ++ +IR+ 
Sbjct: 232 LYCYPKNFTDELITTIAQEPKICKYVDLPLQHAHNSILKSMRRPDTQEEVVTLLKKIRAR 291

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P++A+ S FIVGFPGETD  ++     + +  + +   F YS    TP ++M+ QV E+
Sbjct: 292 IPNVAVRSTFIVGFPGETDAQYQTLRRFLIEQRFEKVGIFTYSQEEDTPAASMMRQVPED 351

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRS----PWLQSVVL 440
           V  ER   L     +     N    G+ ++VL+E   +E      GRS    P +   + 
Sbjct: 352 VVQERYHDLMSVQCKISEELNQGLEGKELDVLVEGRDEEQPNLAFGRSYREAPGVDGQIF 411

Query: 441 NSKNH--NIGDIIKVRITDVKISTLYGELV 468
              +     GDI++VRI         GELV
Sbjct: 412 IEGDAVSRPGDIVRVRIVQGFTYDAVGELV 441


>gi|212711339|ref|ZP_03319467.1| hypothetical protein PROVALCAL_02411 [Providencia alcalifaciens DSM
           30120]
 gi|212686068|gb|EEB45596.1| hypothetical protein PROVALCAL_02411 [Providencia alcalifaciens DSM
           30120]
          Length = 444

 Score =  383 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 136/463 (29%), Positives = 223/463 (48%), Gaps = 35/463 (7%)

Query: 19  DQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAE 78
           +   VP+  FV S GC  N+ DS R+     + GY+ V S DDADL+++NTC   + A +
Sbjct: 4   NTNSVPKIGFV-SLGCPKNLVDSERILTELRTDGYQVVPSYDDADLVIVNTCGFIDSAVQ 62

Query: 79  KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPE 138
           +    +G              +  V+V GC+  A+  +I    P V  + GP +Y ++  
Sbjct: 63  ESLEAIGEA---------LNENGKVIVTGCLG-AKENQIREVHPKVLEITGPHSYEQVLN 112

Query: 139 LLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
            +                 D F  L + + G        A+L I EGC+  CTFC++P  
Sbjct: 113 HVHHY--------VPKPEHDPFFSL-VPEQGVKLTPKHYAYLKISEGCNHRCTFCIIPSM 163

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA------WRGKGLDGE--KCTFSDL 250
           RG   SR++  V++EA++L+++GV E+ ++ Q+ +A       R    DG+  K +   L
Sbjct: 164 RGDLDSRAIGDVLNEAKRLVESGVKELLVISQDTSAYGVDVKHRMGFWDGKPVKTSMVGL 223

Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
              L+ +   VRL Y   +P       +   G    ++PYL +P+Q  S +ILK M R  
Sbjct: 224 CEQLASMGVWVRLHYVYPYPHVDDVIPLMVEG---KVLPYLDIPLQHASPKILKLMKRPG 280

Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370
                 + I R R + P++ + S FIVGFPGET++DF+  +D + +    +   FKYSP 
Sbjct: 281 AVERTLERIKRWREMCPELTLRSTFIVGFPGETEEDFQMLLDFLQEARLDRVGCFKYSPV 340

Query: 371 LGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKL 428
            G   + + +QV E+VK ER     +  +E         VG+ + V++++   E   G+ 
Sbjct: 341 EGAKANELADQVPEDVKEERYHRFMQLQQEISTQRLQEKVGRELWVIVDEVDDEGAVGRS 400

Query: 429 VGRSPWLQS-VVLNSK-NHNIGDIIKVRITDVKISTLYGELVV 469
           +  +P +   V LN + +   GDI+KV I       L+G +V 
Sbjct: 401 MADAPEIDGMVYLNGEFDVKAGDIVKVLIEHADEYDLWGTVVT 443


>gi|167753010|ref|ZP_02425137.1| hypothetical protein ALIPUT_01274 [Alistipes putredinis DSM 17216]
 gi|167659324|gb|EDS03454.1| hypothetical protein ALIPUT_01274 [Alistipes putredinis DSM 17216]
          Length = 432

 Score =  383 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 122/453 (26%), Positives = 209/453 (46%), Gaps = 35/453 (7%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEKVYS 82
           ++  V + GC  N  DS  +     + GY   +  D  DA ++V+NTC     A ++   
Sbjct: 2   KKINVITLGCSKNTVDSEHLMAQLAAAGYTVTHDSDRTDAKVVVINTCGFIGDAKQESID 61

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            + R    K      G    + V GC+++   EE+    P V+   G + +  +   LE 
Sbjct: 62  MILRAAAAKQ----TGKIERLFVVGCLSERYAEELRAELPEVDEFFGVKDWDDIVRALEA 117

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
                              R ++            A+L I EGC+  C +C +P  RG  
Sbjct: 118 T-----------------PRPALATERRLTTPKHYAYLKISEGCNWKCGYCAIPLIRGPH 160

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            S  +  +++EARKL   GV E+ ++ Q+   + G  L G++   ++LL +L  I G+  
Sbjct: 161 ASVPMETLLEEARKLAAGGVRELIVIAQDTT-YYGLDLYGKR-RLAELLEALCRIDGIRW 218

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R   ++P    D +I+       +  YL +P Q  SD  L +M+RRHT  +  ++ID++
Sbjct: 219 IRLHYAYPTAFPDEVIEVMAREPKICKYLDIPFQHISDDQLAAMHRRHTKAQAYELIDKL 278

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN-MLEQ 381
           R   PD+A+ +  +VG+PGET+ DF   ++ V  + + +   F YS   GT  +  + + 
Sbjct: 279 RQAIPDLALRTTLLVGYPGETEADFEELLEFVRTVRFERLGVFPYSEEEGTYSARNLPDD 338

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQS 437
           V E VK  R+  +     E  +  N A +GQ+  V+I+   ++    VGR    SP +  
Sbjct: 339 VPEEVKQSRVERVMALQNEISLENNRARIGQLERVIID--SRQGDFYVGRSQYDSPEVDQ 396

Query: 438 -VVLNSKNHNI--GDIIKVRITDVKISTLYGEL 467
            +++ +    +  G   +VRIT  +   LYGEL
Sbjct: 397 EILIPAAGRRLIRGCFYQVRITAAEDYDLYGEL 429


>gi|328949917|ref|YP_004367252.1| Ribosomal protein S12 methylthiotransferase rimO [Marinithermus
           hydrothermalis DSM 14884]
 gi|328450241|gb|AEB11142.1| Ribosomal protein S12 methylthiotransferase rimO [Marinithermus
           hydrothermalis DSM 14884]
          Length = 451

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 138/461 (29%), Positives = 220/461 (47%), Gaps = 40/461 (8%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           +P +    S GC   + DS ++     ++GYE   + ++ADL+V+NTC     A E+   
Sbjct: 1   MPGKIGFVSLGCPKALVDSEQILTRLRAEGYEVAPTYEEADLVVVNTCGFITPAVEESLD 60

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +G                 VVV GC+     E I  R P V  V GP    R+ E + R
Sbjct: 61  AIGEALRENGK---------VVVTGCLGAR-PEVIQARHPEVLEVTGPGEVDRVLEAVHR 110

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
                          D+    ++V  G        A+L I EGC+  C+FC++P  RG +
Sbjct: 111 VL-----------PPDENPFTALVPRGVKLTPRHYAYLKIAEGCNHRCSFCIIPKLRGRQ 159

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE---------KCTFSDLLYS 253
            SR   +V+ EA +L+  G  E+ ++ Q+ +A  G  L            +   +DL+  
Sbjct: 160 RSRDAGEVLYEAYRLVSTGTKELLVIAQDTSA-YGVDLQHRTSEFQGRAVRAHLTDLVTE 218

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
           L+E+   VRL Y   +P      L+    +   L+PYL +P+Q  S RIL++M R     
Sbjct: 219 LAEMGAWVRLHYVYPYPHV--ADLVALMAE-GKLLPYLDVPLQHASPRILRAMRRPGGPE 275

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
            + + I   R V P++ I S FIVGFPGET+ +F   ++ + +    +  +F YS   G 
Sbjct: 276 AHLETIRAWREVCPELTIRSTFIVGFPGETEAEFELLLEFLAEARLDRVGAFTYSEVEGA 335

Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS- 432
             + +  +V E VKAERL  L     E  +  N   +GQ++EV+++++G+E G+++GR+ 
Sbjct: 336 EANALPGRVPEEVKAERLERLMALQAEISLEKNRKKIGQVLEVIVDEYGEEPGQVIGRTK 395

Query: 433 ---PWLQSVVL--NSKNHNIGDIIKVRITDVKISTLYGELV 468
              P +   V         IGDII+V++TD     LYG+ V
Sbjct: 396 GDAPGIDGRVYAMTDGTVKIGDIIRVKVTDASTYDLYGDAV 436


>gi|227825054|ref|ZP_03989886.1| conserved hypothetical protein [Acidaminococcus sp. D21]
 gi|226905553|gb|EEH91471.1| conserved hypothetical protein [Acidaminococcus sp. D21]
          Length = 442

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 124/443 (27%), Positives = 203/443 (45%), Gaps = 18/443 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +  V S GC  N+ DS  M  +   + +E  N    AD+I++NTC   E A  +  + + 
Sbjct: 2   KIGVVSLGCPKNLVDSEVMMGLIRDRKWELTNDPSHADIIIVNTCGFIESAKTESINTIL 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           ++   K    K      +++ GC+ Q    E+  + P V+ ++G + Y  +  +++R   
Sbjct: 62  QMAEYK----KIDSHRKLIMTGCLGQRYAHELFEQMPEVDAIIGTECYDAIGSVIDRVEK 117

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G+R V  +   +      S            TA++ I EGC   C++C +P  RG   SR
Sbjct: 118 GERFVLLEAPKQ-----YSQPKSRVLSTPQYTAYVKIAEGCSNRCSYCAIPKIRGPYRSR 172

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
              ++V+E + L+  G  E+ L+ Q+     G  L   K   S+LL  L+EI  L  +R 
Sbjct: 173 PYEEIVEEVKSLVQQGTREVILVAQDTT-QYGIDLY-HKLRLSELLRDLNEIPALTWIRI 230

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
              +P   SD LI+       +  Y+ LP+Q  S+ +LK+M RR T  +   ++ ++R+ 
Sbjct: 231 LYCYPESFSDELIETMAQCKKVCHYVDLPLQHASNSLLKTMRRRDTREQVEMLLAKLRNR 290

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            PDI + + FIVGFPGET+  F   +D   K  +  A  F YS    T    M  Q+DE 
Sbjct: 291 MPDICLRTTFIVGFPGETEAQFEELLDFAQKEHFQCAGVFTYSQEEETEAGAMKNQIDEA 350

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL-VGRS----PWLQSVVL 440
            K ER   L     +          G+++ VL+E H ++   L V RS    P +   + 
Sbjct: 351 TKQERYHRLMALQAKISEEIQQEREGKVLTVLVEGHDEKNPDLAVARSYAEAPDIDGKIF 410

Query: 441 N--SKNHNIGDIIKVRITDVKIS 461
              +K   +GD + V+I      
Sbjct: 411 IEGAKGLRVGDFVNVQIDQGFTY 433


>gi|323191004|gb|EFZ76271.1| RNA modification enzyme, MiaB family protein [Escherichia coli
           RN587/1]
          Length = 441

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 136/460 (29%), Positives = 223/460 (48%), Gaps = 35/460 (7%)

Query: 22  IVPQ-RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKV 80
           + PQ +    S GC  N+ DS R+     ++GY+ V S DDAD++++NTC   + A ++ 
Sbjct: 4   VTPQPKIGFVSLGCPKNLVDSERILTELRTEGYDVVPSYDDADMVIVNTCGFIDSAVQES 63

Query: 81  YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140
              +G              +  V+V GC+  A+ ++I    P V  + GP +Y ++ E +
Sbjct: 64  LEAIGEA---------LNENGKVIVTGCLG-AKEDQIREVHPKVLEITGPHSYEQVLEHV 113

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
                            + F  L + + G        A+L I EGC+  CTFC++P  RG
Sbjct: 114 HHY--------VPKPKHNPFLSL-VPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRG 164

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA------WRGKGLDGE--KCTFSDLLY 252
             +SR + +V+ EA++L+D GV EI ++ Q+ +A       R    +GE  K     L  
Sbjct: 165 DLVSRPIGEVLSEAKRLVDAGVKEILVISQDTSAYGVDVKHRTGFHNGEPVKTCMVSLCE 224

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
            LS++    RL Y   +P       + A G    ++PYL +P+Q  S RILK M R  + 
Sbjct: 225 QLSKLGIWTRLHYVYPYPHVDDVIPLMAEG---KILPYLDIPLQHASPRILKLMKRPGSV 281

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
                 I + R + P++ + S FIVGFPGET++DF+  +D + +    +   FKYSP  G
Sbjct: 282 DRQLARIKQWRKICPELTLRSTFIVGFPGETEEDFQMLLDFLKEARLDRVGCFKYSPVEG 341

Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVG 430
              + + +QV E VK ER     +  ++         VG+ I V+I++  +E   G+ + 
Sbjct: 342 ADANALPDQVPEEVKEERWNRFMQLQQQISAERLQEKVGREILVIIDEVDEEGAIGRSMA 401

Query: 431 RSPWLQS-VVLNSK-NHNIGDIIKVRITDVKISTLYGELV 468
            +P +   V LN + N   GDI++V++       L+G  V
Sbjct: 402 DAPEIDGAVYLNGETNVKPGDILRVKVEHADEYDLWGSRV 441


>gi|291528906|emb|CBK94492.1| SSU ribosomal protein S12P methylthiotransferase [Eubacterium
           rectale M104/1]
          Length = 441

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 132/450 (29%), Positives = 216/450 (48%), Gaps = 18/450 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC  N+ DS  M  M  + G E  +    AD+I++N+C     A E+  + + 
Sbjct: 2   KLLFISLGCDKNLVDSEYMIGMLANDGIEMTDDETQADIIIVNSCCFIGDAKEESINTIL 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +   K      G    ++V GC+AQ   +EI +  P V+ ++G  +Y  + E +     
Sbjct: 62  EMAQYKE----TGKCKSLIVTGCLAQRYKDEIFKEIPEVDAILGTNSYDTIVEAVHETLE 117

Query: 146 GKRVVDTDYSVEDKFERLS-IVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
             R     YS     E L  I         G  A+L I EGC+K CT+CV+P  RG   S
Sbjct: 118 KHR-----YSNLHTLEGLPSIKTKRIVTTGGHFAYLKIAEGCNKNCTYCVIPSVRGRYRS 172

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
             +  ++++A+ L++ G  E+ L+ Q      G  L GEK +   LL  L++I GL  +R
Sbjct: 173 VPMEDLIEQAKNLVEQGAKELILVAQETT-LYGVDLYGEK-SLHKLLDELNKISGLFWIR 230

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
               +P ++ D LI++    + +  YL +P+Q  +D IL+ M R+ T  E  + I  +R 
Sbjct: 231 IMYCYPEEIYDELIESMIKDEKVCHYLDMPIQHCNDDILRRMGRKTTKAELMERIRMLRE 290

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             PDI + +  I GFPGET D+    M  V+ + + +  +F YSP  GT  + M +Q+DE
Sbjct: 291 RIPDITLRTTLICGFPGETQDNHEELMQFVNDMEFDRLGAFTYSPEEGTKAAAMPDQIDE 350

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVL 440
           ++K +    + +   E     N+   G+ + V IE    ++   +GR+    P +   + 
Sbjct: 351 DIKTDWQADVMELEEEVIFDKNETLKGKELYVFIEGKVADENAYIGRTYRDAPNVDGYIF 410

Query: 441 NSKNHNI--GDIIKVRITDVKISTLYGELV 468
            + +  +  GDI KV +T      L GELV
Sbjct: 411 INTDETLMTGDICKVMVTGAYEYDLIGELV 440


>gi|148240542|ref|YP_001225929.1| 2-methylthioadenine synthetase [Synechococcus sp. WH 7803]
 gi|238066625|sp|A5GNW7|RIMO_SYNPW RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|147849081|emb|CAK24632.1| 2-methylthioadenine synthetase [Synechococcus sp. WH 7803]
          Length = 468

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 128/468 (27%), Positives = 219/468 (46%), Gaps = 26/468 (5%)

Query: 11  AHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC 70
           +       D             GC+ N  D+  M  +    GY   +    A+++V+NTC
Sbjct: 4   SPDPRPGRDGASTKPTVAFAHLGCEKNRVDTEHMLGLLSEAGYGVSSDESVANVVVVNTC 63

Query: 71  HIREKA-AEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG 129
              ++A  E V + +G     K           +++AGC+AQ   EE+L   P    +VG
Sbjct: 64  SFIQEAREESVRTLVGLAEQGKE----------LIIAGCLAQHFQEELLESLPEAKAIVG 113

Query: 130 PQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKF 189
              Y  + E+LER   G+RV     +     +        +       A+L + EGCD  
Sbjct: 114 TGDYQHIVEVLERVEAGERVNRVSSTPTFVADERLP---RHRTTGEAVAYLKVAEGCDYR 170

Query: 190 CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSD 249
           C FC++P+ RG + SR +  +V EA +L   GV E+ L+ Q +    G  L G +   +D
Sbjct: 171 CAFCIIPHLRGNQRSRPIESIVAEAHQLAAEGVKELILISQ-ITTNYGLDLYG-RPRLAD 228

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
           LL +L +++ +  +R   ++P  +++ +I A+ D+  ++PYL LP+Q     +L++MNR 
Sbjct: 229 LLQALGDVE-IPWIRVHYAYPTGLTNEVISAYRDVPNVLPYLDLPLQHSHPDVLRAMNRP 287

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369
             A    +++D+IRS  P+  + +  IVGFPGET + F      +++  +     F +SP
Sbjct: 288 WQADVNERLLDQIRSQLPEAVLRTTLIVGFPGETQEQFEHLAGFLERQQFDHVGVFTFSP 347

Query: 370 RLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV 429
             GT  + +   VD ++   R   L    +    + N   VG+ ++ LIE+H  E G ++
Sbjct: 348 EQGTAAAELPNPVDADIALARKDRLMTLQQPISAAANARWVGRTVDALIEQHNPETGAMI 407

Query: 430 GR----SPWLQSVVLNSKNHN-----IGDIIKVRITDVKISTLYGELV 468
           GR    +P +   V  +   +      G +I V+IT   I  L  E+V
Sbjct: 408 GRCARFAPEVDGEVHIAPRADGLQAAPGTMIPVQITGSDIYDLRAEIV 455


>gi|291281834|ref|YP_003498652.1| hypothetical protein G2583_1065 [Escherichia coli O55:H7 str.
           CB9615]
 gi|331672336|ref|ZP_08373127.1| putative Fe-S oxidoreductase family 1 [Escherichia coli TA280]
 gi|209775584|gb|ACI86104.1| hypothetical protein ECs0915 [Escherichia coli]
 gi|290761707|gb|ADD55668.1| UPF0004 protein yliG [Escherichia coli O55:H7 str. CB9615]
 gi|320659743|gb|EFX27299.1| ribosomal protein S12 methylthiotransferase [Escherichia coli
           O55:H7 str. USDA 5905]
 gi|331070531|gb|EGI41895.1| putative Fe-S oxidoreductase family 1 [Escherichia coli TA280]
          Length = 441

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 135/460 (29%), Positives = 223/460 (48%), Gaps = 35/460 (7%)

Query: 22  IVPQ-RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKV 80
           + PQ +    S GC  N+ DS R+     ++GY+ V S DDAD++++NTC   + A ++ 
Sbjct: 4   VTPQPKIGFVSLGCPKNLVDSERILTELRTEGYDVVPSYDDADMVIVNTCGFIDSAVQES 63

Query: 81  YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140
              +G              +  V+V GC+  A+ ++I    P V  + GP +Y ++ E +
Sbjct: 64  LEAIGEA---------LNENGKVIVTGCLG-AKEDQIREVHPKVLEITGPHSYEQVLEHV 113

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
                            + F  L + + G        A+L I EGC+  CTFC++P  RG
Sbjct: 114 HHY--------VPKPKHNPFLSL-VPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRG 164

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA------WRGKGLDGE--KCTFSDLLY 252
             +SR + +V+ EA++L+D GV EI ++ Q+ +A       R    +GE  K +   L  
Sbjct: 165 DLVSRPIGEVLSEAKRLVDAGVKEILVISQDTSAYGVDVKHRTGFHNGEPVKTSMVSLCE 224

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
            LS++    RL Y   +P       + A G    ++PYL +P+Q  S RILK M R  + 
Sbjct: 225 QLSKLGIWTRLHYVYPYPHVDDVIPLMAEG---KILPYLDIPLQHASPRILKLMKRPGSV 281

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
                 I + R + P++ + S FIVGFPGET++DF+  +D + +    +   FKYSP  G
Sbjct: 282 DRQLARIKQWREICPELTLRSTFIVGFPGETEEDFQMLLDFLKEARLDRVGCFKYSPVEG 341

Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVG 430
              + + + V E VK ER     +  ++         VG+ I V+I++  +E   G+ + 
Sbjct: 342 ADANALPDPVPEEVKEERWNRFMQLQQQISAERLQEKVGREILVIIDEVDEEGAIGRSMA 401

Query: 431 RSPWLQS-VVLNSK-NHNIGDIIKVRITDVKISTLYGELV 468
            +P +   V LN + N   GDI++V++       L+G  V
Sbjct: 402 DAPEIDGAVYLNGETNVKPGDILRVKVEHADEYDLWGSRV 441


>gi|20807443|ref|NP_622614.1| 2-methylthioadenine synthetase [Thermoanaerobacter tengcongensis
           MB4]
 gi|20515967|gb|AAM24218.1| 2-methylthioadenine synthetase [Thermoanaerobacter tengcongensis
           MB4]
          Length = 437

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 126/444 (28%), Positives = 238/444 (53%), Gaps = 15/444 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    + GC++N Y++  M ++F   GYE V+  + AD+ V+NTC +  ++  K    + 
Sbjct: 3   KVAFYTLGCKVNQYETEVMAELFRKAGYEIVDFDEIADVYVINTCSVTARSDMKSRQMIR 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           + RN          D +VV  GC  Q   +E+    P V++V+G +   ++ +L++    
Sbjct: 63  KTRNK-------NPDAIVVAVGCYVQVSPDEVFS-MPEVDIVIGTKDKDKIVDLVKDFEN 114

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            K+      ++  + +       GY       A++ I++GC+++CT+C++PY RG   SR
Sbjct: 115 EKKKTKLIENIMKQRDYEEFGITGY--TERTRAYIKIEDGCNQYCTYCIIPYARGPVRSR 172

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
               ++ E +K  ++G  EI L G ++ ++   G D +     D++  + E++G+ R+R 
Sbjct: 173 KPENIIKEVKKYAEHGYKEIVLTGIHIASY---GRDLKNIGLLDVIKMVHEVEGIERIRI 229

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
           ++  P  +++ ++K   +L  +  + H+ +QSG D  LK M R++TA EY+++++R+R  
Sbjct: 230 SSIEPTFLTEDVVKELANLPKMCRHYHVSLQSGCDETLKRMGRKYTASEYKEVVERLRRY 289

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            PD+AI++D +VGFPGET+++F  +    ++I +A+   FKYS R GT   N   QV   
Sbjct: 290 IPDVAITTDIMVGFPGETEEEFEKSYKFAEEICFAKMHVFKYSRRKGTRAYNFPNQVPNK 349

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRSPWLQSVVLNSK- 443
           VK ER   L +  +  +  F +  + + +EVL E+  K+  G + G +    SV +  + 
Sbjct: 350 VKEERSKKLLQLSKVCERKFKERFLNRTVEVLFEQKVKDLDGYVEGLTDNYLSVAVKGEL 409

Query: 444 NHNIGDIIKVRITDVKISTLYGEL 467
            +    I+ VR+ ++K   L GE+
Sbjct: 410 ENLRNRILPVRVKEIKNDLLIGEI 433


>gi|124021929|ref|YP_001016236.1| Fe-S oxidoreductase [Prochlorococcus marinus str. MIT 9303]
 gi|238066589|sp|A2C661|RIMO_PROM3 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|123962215|gb|ABM76971.1| possible Fe-S oxidoreductase [Prochlorococcus marinus str. MIT
           9303]
          Length = 472

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 129/452 (28%), Positives = 215/452 (47%), Gaps = 26/452 (5%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA-AEKVYSFLG 85
                 GC+ N  D+  M  +    GY   +  +DA ++V+NTC   + A  E V + +G
Sbjct: 24  VAFAHLGCEKNRVDTEHMLGLLTEAGYSVSSDENDAAVVVVNTCSFIQDAREESVRTLIG 83

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                K           +++AGC+AQ   EE+L   P    +VG   Y  + ++L+R   
Sbjct: 84  LAEQGKE----------LIIAGCLAQHFQEELLESIPEAKAIVGTGDYQHIVDVLKRVEA 133

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G+RV           +                A+L + EGCD  C FC++P  RG + SR
Sbjct: 134 GERVNRVSAFPTFVGDETLPRQ---RTTDQAVAYLKVAEGCDYRCAFCIIPKLRGDQRSR 190

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            +  +V EA +L + GV E+ L+ Q +    G  L G K  F++LL +L E+  +  +R 
Sbjct: 191 PVESIVAEAHQLAEQGVQELILISQ-ITTNYGLDLYG-KPKFAELLQALGEVD-IPWVRV 247

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
             ++P  ++  ++ A+ ++  ++ YL LP+Q     +L++MNR        +++DRIR  
Sbjct: 248 HYAYPTGLTPEVLAAYREVPNVLRYLDLPLQHSHPDVLRAMNRPWQTDVNERLLDRIREQ 307

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            PD  + +  IVGFPGET+D F      +++  +     F +SP  GT  +++  +VD +
Sbjct: 308 LPDAVLRTTLIVGFPGETEDHFNHLAAFIERQRFDHVGVFTFSPEDGTAAADLPNRVDPS 367

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVVL- 440
           + A R   L    +      N   VG+ I+VLIE+H  E G ++GR    +P +   VL 
Sbjct: 368 IAAARKDRLMALQQPISAERNQRWVGRTIDVLIEQHNPETGAMIGRCDRFAPEVDGEVLV 427

Query: 441 ----NSKNHNIGDIIKVRITDVKISTLYGELV 468
                    + G ++ V IT   +  L G+LV
Sbjct: 428 LPSEKGLQASPGTMVPVFITGSDVYDLTGQLV 459


>gi|74311379|ref|YP_309798.1| ribosomal protein S12 methylthiotransferase [Shigella sonnei Ss046]
 gi|110804833|ref|YP_688353.1| ribosomal protein S12 methylthiotransferase [Shigella flexneri 5
           str. 8401]
 gi|123048317|sp|Q0T6C8|RIMO_SHIF8 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|123773546|sp|Q3Z3U9|RIMO_SHISS RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|73854856|gb|AAZ87563.1| conserved hypothetical protein [Shigella sonnei Ss046]
 gi|110614381|gb|ABF03048.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401]
 gi|323165766|gb|EFZ51552.1| RNA modification enzyme, MiaB family protein [Shigella sonnei 53G]
          Length = 441

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 135/460 (29%), Positives = 223/460 (48%), Gaps = 35/460 (7%)

Query: 22  IVPQ-RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKV 80
           + PQ +    S GC  N+ DS R+     ++GY+ V S DDAD++++NTC   + A ++ 
Sbjct: 4   VTPQPKIGFVSLGCPKNLVDSERILTELRTEGYDVVPSYDDADMVIVNTCGFIDSAVQES 63

Query: 81  YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140
              +G              +  V+V GC+  A+ ++I    P V  + GP +Y ++ E +
Sbjct: 64  LEAIGEA---------LNENGKVIVTGCLG-AKEDQIREVHPKVLEITGPHSYEQVLEHV 113

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
                            + F  L + + G        A+L I EGC+  CTFC++P  RG
Sbjct: 114 HHY--------VPKPKHNPFLSL-VPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRG 164

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA------WRGKGLDGE--KCTFSDLLY 252
             +SR + +V+ EA++L+D GV EI ++ Q+ +A       R    +GE  K +   L  
Sbjct: 165 DLVSRPIGEVLSEAKRLVDAGVKEILVISQDTSAYGVDVKHRTGFHNGEPVKTSMVSLCE 224

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
            LS++    RL Y   +P       + A G    ++PYL +P+Q  S RILK M R  + 
Sbjct: 225 QLSKLGIWTRLHYVYPYPHVDDVIPLMAEG---KILPYLDIPLQHASPRILKLMKRPGSV 281

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
                 I + R + P++ + S FIVGFP ET++DF+  +D + +    +   FKYSP  G
Sbjct: 282 DRQLARIKQWREICPELTLRSTFIVGFPSETEEDFQMLLDFLKEARLDRVGCFKYSPVEG 341

Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVG 430
              + + +QV E VK ER     +  ++         VG+ I V+I++  +E   G+ + 
Sbjct: 342 ADANALPDQVPEEVKEERWNRFMQLQQQISAERLQEKVGREILVIIDEVDEEGAIGRSMA 401

Query: 431 RSPWLQS-VVLNSK-NHNIGDIIKVRITDVKISTLYGELV 468
            +P +   V LN + N   GDI++V++       L+G  V
Sbjct: 402 DAPEIDGAVYLNGETNVKPGDILRVKVEHADEYDLWGSRV 441


>gi|37675741|ref|NP_936137.1| 2-methylthioadenine synthetase [Vibrio vulnificus YJ016]
 gi|320157907|ref|YP_004190285.1| ribosomal protein S12p Asp88, methylthiotransferase [Vibrio
           vulnificus MO6-24/O]
 gi|81756249|sp|Q7MG88|RIMO_VIBVY RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|37200280|dbj|BAC96107.1| 2-methylthioadenine synthetase [Vibrio vulnificus YJ016]
 gi|319933219|gb|ADV88082.1| ribosomal protein S12p Asp88 methylthiotransferase [Vibrio
           vulnificus MO6-24/O]
          Length = 469

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 129/474 (27%), Positives = 214/474 (45%), Gaps = 37/474 (7%)

Query: 10  VAHMVSQIVDQCIVP---QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIV 66
            A    +   Q + P    +    S GC  N+ DS R+     ++GYE VNS  D+D+++
Sbjct: 16  TAKKTIEQQSQELTPSGGNKIGFVSLGCPKNLVDSERILTQLRTEGYEIVNSYHDSDVVI 75

Query: 67  LNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNV 126
           +NTC   + A ++    +G    LK +         V+V GC+   E +EI    P V  
Sbjct: 76  VNTCGFIDSAVQESLDTIGEA--LKENGK-------VIVTGCLGARE-DEIREVHPGVLG 125

Query: 127 VVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGC 186
           + GP  Y  + E + +              E       + D G        A+L I EGC
Sbjct: 126 ITGPHAYENVLEHVHQFAP---------KPEHNPFTSLVPDHGVKLTPKHYAYLKISEGC 176

Query: 187 DKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK------GL 240
           +  CTFC++P  RG  +SR + +++ EA +L + GV E+ ++ Q+ +A+           
Sbjct: 177 NHRCTFCIIPSMRGDLVSRPVGEILSEAERLKNAGVKELLVISQDTSAYGVDSKHSLGFA 236

Query: 241 DGEKCT--FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
           +G         L   L ++   VRL Y   +P       + A G    ++PYL +P Q  
Sbjct: 237 NGSPVRQNIKALSEELGKMGIWVRLHYVYPYPHVDDLIPLMAEG---KILPYLDIPFQHA 293

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           S  +LK+M R   A      I + R + P++ I S FIVGFPGETD+DF   ++ + +  
Sbjct: 294 SPNVLKAMKRPGRAERTLDQIKKWREICPELVIRSTFIVGFPGETDEDFEMLLEWLKEAQ 353

Query: 359 YAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI 418
             +   FKYSP  G   +++ +Q+ E VK ER        +E   +     +G  ++V+I
Sbjct: 354 LDRVGCFKYSPVEGAAANDIDDQISEEVKQERFERFMLVQQEISAAKLQKRIGSTMKVII 413

Query: 419 EKHGKEK--GKLVGRSPWLQSVVLNSKN--HNIGDIIKVRITDVKISTLYGELV 468
           ++  +E   G+    +P +  +V  +       G+++ V I       L+G LV
Sbjct: 414 DEVDEEGAIGRTYADAPEIDGLVYLNGETSLKAGELVDVLIEHADEYDLWGSLV 467


>gi|145298336|ref|YP_001141177.1| ribosomal protein S12 methylthiotransferase [Aeromonas salmonicida
           subsp. salmonicida A449]
 gi|238065281|sp|A4SKK7|RIMO_AERS4 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|142851108|gb|ABO89429.1| Fe-S oxidoreductases family 1 [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 442

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 136/464 (29%), Positives = 221/464 (47%), Gaps = 35/464 (7%)

Query: 17  IVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA 76
           + +    P+  FV S GC  N+ DS R+     ++GY+ V S DDA+L+V+NTC   + A
Sbjct: 1   MSNTKQAPKVGFV-SLGCPKNLVDSERILTQLRTEGYDVVPSYDDAELVVVNTCGFIDSA 59

Query: 77  AEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL 136
            ++    +G                 V+V GC+  A+  +I    P V  + GP  Y  +
Sbjct: 60  VQESLEAIGEALAENGK---------VIVTGCLG-AKENQIREIHPKVLEITGPHAYEEV 109

Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
              + +               + F  L    G     R   A+L I EGC+  CTFC++P
Sbjct: 110 LGHVHKY--------VAKPTHNPFTSLVPAHGVKLTPRHY-AYLKISEGCNHRCTFCIIP 160

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA------WRGKGLDGE--KCTFS 248
             RG  +SR + +V+ EA++L + GV EI ++ Q+ +A       R    DG   K +  
Sbjct: 161 SMRGDLVSRPIGEVLAEAKRLKEAGVKEILVISQDTSAYGVDVKHRTGFYDGMPVKTSMV 220

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
            L   L+++   VRL Y   +P       +        ++PYL +P+Q  S RILK M R
Sbjct: 221 ALCEELAKLDIWVRLHYVYPYPHVDDVIPLM---RDGKVLPYLDIPLQHASPRILKLMKR 277

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
             T     + I + R + P+I + S FIVGFPGET+++F+  +D +DK    +   FKYS
Sbjct: 278 PGTVERTLERIQKWREICPEITLRSTFIVGFPGETEEEFQMLLDFIDKAELDRVGCFKYS 337

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--G 426
           P  G   + + + V E+V+ ER     +  ++  +      VG+ + VLI++  +E   G
Sbjct: 338 PVEGAKANELPDPVPEDVQEERFQRFMELQQQVSIRKLARKVGKEMTVLIDEVDEEGATG 397

Query: 427 KLVGRSPWLQS-VVLNSK-NHNIGDIIKVRITDVKISTLYGELV 468
           +    +P +   V LN + +   GD++KVRI +     L+  L+
Sbjct: 398 RSFADAPEIDGLVYLNGETDLKPGDLVKVRIDEADEYDLWASLI 441


>gi|205374147|ref|ZP_03226947.1| RNA modification protein [Bacillus coahuilensis m4-4]
          Length = 430

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 132/435 (30%), Positives = 240/435 (55%), Gaps = 21/435 (4%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
               + GC++N Y++  +  +F  QGYERV+    +D+ V+NTC +     +K    + R
Sbjct: 4   VAFHTLGCKVNHYETEAIWQLFKDQGYERVDFEKQSDVYVINTCTVTNTGDKKSRQVIRR 63

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
                   I+   D ++ V GC AQ    EI+   P V++VVG Q   ++ + +E+ +  
Sbjct: 64  A-------IRSNPDAVICVTGCYAQTSPAEIMA-IPGVDIVVGTQDRVKMLDYIEQYKVE 115

Query: 147 KRVVDTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
           ++ ++   ++     +E L +            A L IQEGC+ FCTFC++P+ RG+  S
Sbjct: 116 RQPINAVGNIMKNRVYEELDVP----AFTDRTRASLKIQEGCNNFCTFCIIPWARGLMRS 171

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS-EIKGLVRL 263
           R   +V+ +A++L+D G  EI L G +     G G D +    + LL  L  ++KGL R+
Sbjct: 172 RDPKEVIRQAQQLVDAGYKEIVLTGIHTG---GYGEDMKDYNLALLLRDLETQVKGLKRI 228

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R ++     ++D +++     ++++ +LH+P+QSGS+ +LK M R++T   + + ++++R
Sbjct: 229 RISSIEASQLTDEVMEVIDQSNMVVRHLHIPLQSGSNTVLKRMRRKYTMEFFGERLEKLR 288

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              P +A++SD IVGFPGET+++F  T   + + G+++   F YS R GTP + M +QVD
Sbjct: 289 KALPGLAVTSDVIVGFPGETEEEFLETFHFIKEQGFSELHVFPYSKRTGTPAARMDDQVD 348

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK---GKLVGRSPWLQSVVL 440
           E++K ER+  L +   +    +     G+++EV+ E+  KE    G  VG +     +V 
Sbjct: 349 EDIKNERVHRLIELSNQLAKEYASRFEGEVLEVIPEEPFKEDPDSGLYVGYTDNYLKIVF 408

Query: 441 NSKNHNIGDIIKVRI 455
            +++  +G ++KV+I
Sbjct: 409 PARDDMVGKLVKVKI 423


>gi|17553146|ref|NP_498290.1| hypothetical protein F25B5.5 [Caenorhabditis elegans]
 gi|2501544|sp|Q09316|CK5P1_CAEEL RecName: Full=CDK5RAP1-like protein
 gi|726392|gb|AAC46526.1| Hypothetical protein F25B5.5 [Caenorhabditis elegans]
          Length = 547

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 153/472 (32%), Positives = 237/472 (50%), Gaps = 36/472 (7%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +     +YGCQMNV D   +  +    G+   +  ++AD+++L TC IR+ A +KV++ L
Sbjct: 79  RTVCYVTYGCQMNVSDMEIVRSIMTKYGFVESDKKENADIVLLMTCSIRDGAEKKVWNQL 138

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             IR+            +V V GC+A+    ++L +  +VN+V GP +Y  LP L+  A 
Sbjct: 139 KLIRS-----NSVNKGQIVGVLGCMAERVRHDLLEKRNLVNIVAGPDSYRDLPRLVAVAA 193

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G   ++   S+++ +  +  +      K   TAF++I  GCD  CT+CVVP+TRG E S
Sbjct: 194 GGSNGINVQLSLDETYADVQPIRVDSASK---TAFISIMRGCDNMCTYCVVPFTRGRERS 250

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG---------------KGLDGEKC---- 245
           R +  +V+E ++L D G  ++TLLGQNVN++R                  + G K     
Sbjct: 251 RPIESIVEEVQRLRDQGYKQVTLLGQNVNSYRDMTSMDFSMAPSTSQEDRVPGFKTVYKP 310

Query: 246 -----TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300
                TF+ LL  +++    +R R+T+ HP+D    LI+       L   LHLP QSG D
Sbjct: 311 KSGGLTFTTLLEKVADAAPDIRFRFTSPHPKDFPMQLIELIASRPNLCKQLHLPAQSGDD 370

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
             L+ M R +T   Y +++D IR V P ++++SDFI GF GET+   + T+ L+  + Y+
Sbjct: 371 ETLERMERGYTRDLYLRLVDDIRHVLPSVSLTSDFIAGFCGETEQAHQNTLSLIRAVRYS 430

Query: 361 QAFSFKYSPRLGTPG-SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419
             F F YS R  T     + + V E+VKA R L L    RE+ +  N A +G    VL+E
Sbjct: 431 FCFVFPYSMRGKTRAHHRLTDDVPEDVKARRHLDLTTVFREEALKLNQALIGSEQTVLLE 490

Query: 420 KHGKEKGKLV-GRSPWLQSVVLNSKN--HNIGDIIKVRITDVKISTLYGELV 468
              K       GR       V ++       G   K+ ITD    TL  +L+
Sbjct: 491 GKSKRDASFSHGRIDGGVKAVFDNSKLCLEPGQYAKILITDANSQTLKAQLI 542


>gi|312898442|ref|ZP_07757832.1| MiaB-like tRNA modifying enzyme YliG [Megasphaera micronuciformis
           F0359]
 gi|310620361|gb|EFQ03931.1| MiaB-like tRNA modifying enzyme YliG [Megasphaera micronuciformis
           F0359]
          Length = 443

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 132/451 (29%), Positives = 217/451 (48%), Gaps = 18/451 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC  N+ D+  M  +   +     +    AD+I++NTC   EKA ++    + 
Sbjct: 3   KIAFVSLGCSKNLIDTEVMLGILKDKHMGMTDDPAQADIIIVNTCTFIEKAKQESIDAII 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                K      G   +++V GC++Q   EE+L+  P V+ ++G  ++ R+ E +   + 
Sbjct: 63  EAGRYKTE----GRCKILIVTGCLSQQYQEELLKELPEVDALLGTGSWDRIWEAVTAGKT 118

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           GKR       ++D                  +A++ I EGC+  CTFC++P+ RG   SR
Sbjct: 119 GKRAC----FMDDVSHLYDQNTSRVLTTPTYSAYVKIGEGCNNGCTFCIIPHVRGPLYSR 174

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           ++  V  E R+L   GV EI L+ Q+  +  G  L G K    DLL  L +I+G+  +R 
Sbjct: 175 TVESVTAEVRQLAAGGVKEINLIAQDTTS-YGFDLAG-KSLLPDLLRELVKIEGIEWIRL 232

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
              +P   +D L +     + + PY+ LP+Q  S  +LK MNRR +  +  ++ID++ + 
Sbjct: 233 FYLYPHFFTDELTELIVKEEKICPYVDLPLQHISQSVLKRMNRRDSQADILKLIDKLTAH 292

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
              + + S FIVGFPGET+++F+   D V++  +     F YS   GTP + M +Q+ E 
Sbjct: 293 GRKLTLRSTFIVGFPGETEEEFQELCDFVERTKFDAVGVFTYSQEEGTPAAAMADQIPEE 352

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL--VGR----SPWLQSV- 438
           VK ER   L     +     N    G I   ++E+   E G L  VGR    +P +  + 
Sbjct: 353 VKEERYHRLMAIQAKVSEERNRDLEGSIHPFIVEELTDESGHLQAVGRLDIQAPEVDGLT 412

Query: 439 -VLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            V ++K    GDII VR+       +  E +
Sbjct: 413 YVEDAKGLKEGDIIPVRVVQGFAYDVIAERI 443


>gi|24112201|ref|NP_706711.1| hypothetical protein SF0785 [Shigella flexneri 2a str. 301]
 gi|81723615|sp|Q83LT1|RIMO_SHIFL RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|24051044|gb|AAN42418.1| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301]
 gi|332760529|gb|EGJ90818.1| RNA modification enzyme, MiaB family protein [Shigella flexneri
           2747-71]
 gi|332768001|gb|EGJ98187.1| SAM-dependent methylase [Shigella flexneri 2930-71]
 gi|333006987|gb|EGK26482.1| RNA modification enzyme, MiaB family protein [Shigella flexneri
           K-218]
          Length = 441

 Score =  383 bits (983), Expect = e-104,   Method: Composition-based stats.
 Identities = 135/460 (29%), Positives = 224/460 (48%), Gaps = 35/460 (7%)

Query: 22  IVPQ-RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKV 80
           + PQ +    S GC  N+ DS R+     ++GY+ V S DDA+++++NTC   + A ++ 
Sbjct: 4   VTPQPKIGFVSLGCPKNLVDSERILTELRTEGYDVVPSYDDANMVIVNTCGFIDSAVQES 63

Query: 81  YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140
              +G              +  V+V GC+  A+ ++I    P V  + GP +Y ++ E +
Sbjct: 64  LEAIGEA---------LNENGKVIVTGCLG-AKEDQIREVHPKVLEITGPHSYEQVLEHV 113

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
                            + F  L + + G        A+L I EGC+  CTFC++P  RG
Sbjct: 114 HHY--------VPKPKHNPFLSL-VPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRG 164

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA------WRGKGLDGE--KCTFSDLLY 252
             +SR + +V+ EA++L+D GV EI ++ Q+ +A       R    +GE  K +   L  
Sbjct: 165 DLVSRPIGEVLSEAKRLVDAGVKEILVISQDTSAYGVDVKHRTGFHNGEPVKTSMVSLCE 224

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
            LS++    RL Y   +P       + A G    ++PYL +P+Q  S RILK M R  + 
Sbjct: 225 QLSKLGIWTRLHYVYPYPHVDDVIPLMAEG---KILPYLDIPLQHASPRILKLMKRPGSV 281

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
                 I + R + P++ + S FIVGFPGET++DF+  +D + +    +   FKYSP  G
Sbjct: 282 DRQLARIKQWREICPELTLRSTFIVGFPGETEEDFQMLLDFLKEARLDRVGCFKYSPVEG 341

Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVG 430
              + + +QV E VK ER     +  ++         VG+ I V+I++  +E   G+ + 
Sbjct: 342 ADANALPDQVPEEVKEERWNRFMQLQQQISAERLQEKVGREILVIIDEVDEEGAIGRSMA 401

Query: 431 RSPWLQS-VVLNSK-NHNIGDIIKVRITDVKISTLYGELV 468
            +P +   V LN + N   GDI++V++       L+G  V
Sbjct: 402 DAPEIDGAVYLNGETNVKPGDILRVKVEHADEYDLWGSRV 441


>gi|162453546|ref|YP_001615913.1| hypothetical protein sce5270 [Sorangium cellulosum 'So ce 56']
 gi|229891000|sp|A9FST8|MIAB_SORC5 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|161164128|emb|CAN95433.1| hypothetical protein sce5270 [Sorangium cellulosum 'So ce 56']
          Length = 498

 Score =  383 bits (983), Expect = e-104,   Method: Composition-based stats.
 Identities = 181/471 (38%), Positives = 261/471 (55%), Gaps = 32/471 (6%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           +P R+ + ++GCQMNV+DS RM D+    GY    S D+AD++VLNTC +REKA +K+ S
Sbjct: 1   MP-RYSITTFGCQMNVHDSERMHDVLRCAGYTEAGSADEADVLVLNTCSVREKAEQKLRS 59

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +GR+   K  R     D ++VVAGCVAQ EGE +L++   ++VVVGP     LP LL  
Sbjct: 60  EVGRLARWKRERA----DRVLVVAGCVAQQEGERLLKQMRAIDVVVGPDNIPELPGLLGD 115

Query: 143 ARFG-----KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197
              G     + V D D          S       R    TAF+T+ +GCD+ C+FC+VP+
Sbjct: 116 LAIGGLPIARTVFDLDAPRFLVASPPSPSSSSSPRA-APTAFVTVMKGCDERCSFCIVPH 174

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG-----------KGLDGEKCT 246
           TRG E  R   ++V E   L+  G  E+TLLGQ VN++R               D ++  
Sbjct: 175 TRGPERYRPSDEIVAEIAALVAAGTREVTLLGQTVNSYRDPLGALPRAPGASADDPDESE 234

Query: 247 FSDLLYSLS-EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
           F+ LL  ++ ++ GL RLRYT+ HPR ++  L+ AH +L VL  ++H+PVQSGSDR+L+ 
Sbjct: 235 FAALLRRVAADVPGLARLRYTSPHPRHLTPSLVLAHAELPVLPRHVHMPVQSGSDRVLRR 294

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           M RR+T  EY      +    P + +S+D IVGFPGET+DDF AT+ LV ++G+   F F
Sbjct: 295 MIRRYTRAEYVARTRALVEAVPGLTLSTDIIVGFPGETEDDFAATLSLVREVGFKGLFGF 354

Query: 366 KYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK 425
           KYS R  TP   + + V E VK ERL  L ++      +   A VG   EVL+E   KE+
Sbjct: 355 KYSRRPHTPALKLPDDVPEGVKGERLARLFEESEALLAAHLSALVGTTQEVLVEGRDKER 414

Query: 426 GK-------LVGRSPWLQSVVLNSKNH--NIGDIIKVRITDVKISTLYGEL 467
           G          GR+   +   ++       +G++++V I      +L  EL
Sbjct: 415 GHGGAGGALWSGRTGRHEIAHIDGAGELDLLGEVVEVSIARANKHSLQAEL 465


>gi|293602346|ref|ZP_06684792.1| MiaB family RNA modification enzyme [Achromobacter piechaudii ATCC
           43553]
 gi|292819108|gb|EFF78143.1| MiaB family RNA modification enzyme [Achromobacter piechaudii ATCC
           43553]
          Length = 439

 Score =  383 bits (983), Expect = e-104,   Method: Composition-based stats.
 Identities = 130/459 (28%), Positives = 215/459 (46%), Gaps = 33/459 (7%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           +   +    S GC   + DS R+     ++GYE     +DAD++V+NTC   + A  +  
Sbjct: 1   MSSPKVGFVSLGCPKALVDSERILTQLRTEGYEVTPEYNDADVVVVNTCGFIDSAKAESL 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             +G                 V+V GC+   E   I +  P V  V GPQ Y  +   + 
Sbjct: 61  EAIGEALAENGK---------VIVTGCMGVEE-SVIRKVHPSVLAVTGPQQYEEVVRAVH 110

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
            A   K+  +    +        +   G        A+L I EGC+  C+FC++P  RG 
Sbjct: 111 DAAPPKQDHNPYLDL--------VPPQGIKLTPRHYAYLKISEGCNHRCSFCIIPSMRGD 162

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYS 253
            +SR +  V+ EA +L+  GV E+ ++ Q+ +A+      R    +G   K   ++L  +
Sbjct: 163 LVSRPVGDVLSEAERLVKAGVKEMLVISQDTSAYGVDVKYRSGFWNGRPVKTRMTELCLA 222

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
           LSE+    RL Y   +P       + A G    ++PYL +P Q  S RILK+M R     
Sbjct: 223 LSEMGIWTRLHYVYPYPHVDEVIPLMAEG---KILPYLDIPFQHASPRILKAMKRPAFED 279

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
           +    I R R + PD+ I S FIVGFPGET++DF+  +D + +    +   F+YSP  G 
Sbjct: 280 KTLARIKRWREICPDLTIRSTFIVGFPGETEEDFQYLLDWMQEAQLDRVGCFQYSPVEGA 339

Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGR 431
           P + +   V ++VK ER     +  +    +     VG+ I+VLI++  ++   G+    
Sbjct: 340 PANLLDNPVPDDVKQERWERFMQLQQGISTARLARKVGREIDVLIDEVDEDGAIGRSSAD 399

Query: 432 SPWLQSVVLNSKN--HNIGDIIKVRITDVKISTLYGELV 468
           +P +   V  S +     GD+++VR+T+     L+GE++
Sbjct: 400 APEIDGCVYVSSDNPLKPGDMVRVRVTESDEYDLWGEVI 438


>gi|257467023|ref|ZP_05631334.1| hypothetical protein FgonA2_06247 [Fusobacterium gonidiaformans
           ATCC 25563]
 gi|315918160|ref|ZP_07914400.1| radical SAM domain-containing protein [Fusobacterium gonidiaformans
           ATCC 25563]
 gi|313692035|gb|EFS28870.1| radical SAM domain-containing protein [Fusobacterium gonidiaformans
           ATCC 25563]
          Length = 444

 Score =  383 bits (983), Expect = e-104,   Method: Composition-based stats.
 Identities = 127/450 (28%), Positives = 221/450 (49%), Gaps = 20/450 (4%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQ-GYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           F + S GC  N+ DS  +  +  ++ G++  N +++ADL+++NTC     A ++    + 
Sbjct: 3   FALISLGCSKNLVDSENLTGILVNRKGFQLTNEIEEADLVLINTCGFIGDAKKESIETIL 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +   K  R+K      +VV GC+AQ   EE+L+  P ++ V+G     ++  +++    
Sbjct: 63  EVAEYKQERLK-----KIVVCGCLAQRYAEELLQEIPEIDAVIGTGEIDKIESVVDEILQ 117

Query: 146 GKRVVDTDYSVEDKFERLSIVD-GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            K+ V+T       F  L   D          TA+L I EGC++ CT+C++P  RG   S
Sbjct: 118 DKKAVETS-----SFHFLPNADTDRVLTTPPHTAYLKISEGCNRRCTYCIIPQLRGDLRS 172

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R+   +++EA++L+  GV E+ LL Q      G    G+K    DLL  L +I+GL  +R
Sbjct: 173 RTKEDILEEAKRLVSGGVRELNLLAQETTE-YGIDNYGKKA-LPDLLRELVKIEGLDWIR 230

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
                PR ++D LI+     + +  Y  +P+Q  S  +L+ M R  T  + ++++ +IR 
Sbjct: 231 TYYMFPRSITDELIEVMKQEEKICKYFDIPIQHISSNMLRRMGRAITGEQTKELLYKIRK 290

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             P+    +  IVGFPGET+++F+   D V++  +     F+YS    T    M  Q+ E
Sbjct: 291 EIPEAVFRTSLIVGFPGETEEEFQELKDFVEEFQFDYIGVFQYSREEDTVAYTMENQIPE 350

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GR----SPWLQSVV 439
            VK  R   L     E   S N   +G+ +EVLI+    E   ++ GR    +  +   V
Sbjct: 351 EVKERRQAELINLQNEIAESKNRKLLGREVEVLIDGISSESEYMLEGRLKTQALDIDGKV 410

Query: 440 LNSKN-HNIGDIIKVRITDVKISTLYGELV 468
           L S+    +G+++++ +         G +V
Sbjct: 411 LTSEGTAQVGEMVRIMLEQNFEYDFIGRIV 440


>gi|262401907|ref|ZP_06078472.1| ribosomal protein S12p Asp88 methylthiotransferase [Vibrio sp.
           RC586]
 gi|262351879|gb|EEZ01010.1| ribosomal protein S12p Asp88 methylthiotransferase [Vibrio sp.
           RC586]
          Length = 470

 Score =  382 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 131/469 (27%), Positives = 217/469 (46%), Gaps = 36/469 (7%)

Query: 13  MVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHI 72
           +  Q         +    S GC  N+ DS R+     ++GYE VNS  D+D++++NTC  
Sbjct: 21  IAEQSQGSQTTGNKIGFVSLGCPKNLVDSERILTQLRTEGYEIVNSYHDSDVVIVNTCGF 80

Query: 73  REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT 132
            + A ++    +G    LK +         V+V GC+   E +EI +  P V  + GP  
Sbjct: 81  IDSAVQESLDTIGEA--LKENGK-------VIVTGCLGARE-DEIRQVHPNVLGITGPHA 130

Query: 133 YYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTF 192
           Y  + E + +               + F  L + D G        A+L I EGC+  CTF
Sbjct: 131 YQNVLEHVHQY--------APKPAHNPFTSL-VPDHGVKLTPKHYAYLKISEGCNHRCTF 181

Query: 193 CVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE--------- 243
           C++P  RG  +SR + +++ EA +L + GV E+ ++ Q+ +A  G               
Sbjct: 182 CIIPSMRGDLVSRPVGEIIGEAERLKNAGVKELLVISQDTSA-YGVDTKHSLGFANGSPV 240

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
           +     L   L ++   VRL Y   +P       + A G    ++PYL +P Q  S R+L
Sbjct: 241 RHNIKALSEELGKMGIWVRLHYVYPYPHVDEIIPLMAKG---KVLPYLDIPFQHASPRVL 297

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           K M R   A    + I + R + P++ I S FIVGFPGET++DF+  +D + +    +  
Sbjct: 298 KMMKRPGQAERTLERIKKWREICPELVIRSTFIVGFPGETEEDFQILLDWLKEAQLDRVG 357

Query: 364 SFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK 423
            FKYSP  G   + + EQ+ E+VK +R        +E   +     +G  ++VLI++  +
Sbjct: 358 CFKYSPVEGAAANEIEEQIPEDVKQDRFERFMLVQQEISAAKLQKRIGSTMQVLIDEVDE 417

Query: 424 EK--GKLVGRSPWLQS-VVLNSK-NHNIGDIIKVRITDVKISTLYGELV 468
           E   G+    +P +   V LN + N   G+++ V I       L+G ++
Sbjct: 418 EGAIGRTYADAPEIDGLVYLNGETNLKPGELVNVVIEHADEYDLWGSVL 466


>gi|228471734|ref|ZP_04056507.1| conserved hypothetical protein [Capnocytophaga gingivalis ATCC
           33624]
 gi|228276887|gb|EEK15582.1| conserved hypothetical protein [Capnocytophaga gingivalis ATCC
           33624]
          Length = 469

 Score =  382 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 134/459 (29%), Positives = 217/459 (47%), Gaps = 33/459 (7%)

Query: 17  IVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA 76
           +  + I   +  V + GC  NVYDS  +     + G E V+  D  +++V+NTC     A
Sbjct: 10  MRTKSIKQNKINVVTLGCSKNVYDSEVLMGQLKASGKEVVH-EDKGNIVVINTCGFINNA 68

Query: 77  AEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL 136
            E+  + +      K      G    V V GC+++    ++ +  P V+   G      L
Sbjct: 69  KEESINTILEYIQKKEE----GLVDKVFVMGCLSERYKPDLQKEIPDVDQYFGT---TEL 121

Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
           P LL       +V+  DY  E   ERL+     Y       A+L + EGCD+ C+FC +P
Sbjct: 122 PALL-------KVLGADYKHELIGERLTTTPKNY-------AYLKVSEGCDRPCSFCAIP 167

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256
             RG   S S+  +V EA KL   GV E+ L+ Q+V  + G  L GE+   +DLL +L++
Sbjct: 168 IMRGSHKSTSIENLVIEAEKLAKKGVKELILIAQDVT-YYGLDLYGERK-LADLLRALAK 225

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           ++G+  +R   + P      ++    +   +  YL +P+Q  +D ILKSM R  T  +  
Sbjct: 226 VEGIEWIRIHYAFPTGFPKDVLTVMKEEPKICKYLDIPLQHIADPILKSMKRGTTKAKTT 285

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
           Q+++  R   P+IAI +  IVG+P ET++DF    + V ++ + +   F YS    T   
Sbjct: 286 QLLEDFRKAMPEIAIRTTLIVGYPNETEEDFEELKEFVRQMRFERLGCFTYSHEENTAAY 345

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQ 436
            + + + E VK  R   + +   +     N A VG+    LI++  KE    VGR+ +  
Sbjct: 346 ELEDNIPEEVKQRRAAEIMEIQSQISWELNQAKVGKTFRCLIDR--KEGQYFVGRTEYDS 403

Query: 437 S-----VVLNSKNH--NIGDIIKVRITDVKISTLYGELV 468
                 V++++  H   IGD   + IT+     LYGE V
Sbjct: 404 PDVDNEVLIDAAKHYVKIGDFADILITEATDFDLYGEPV 442


>gi|227112051|ref|ZP_03825707.1| hypothetical protein PcarbP_03748 [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 437

 Score =  382 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 130/455 (28%), Positives = 218/455 (47%), Gaps = 34/455 (7%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R    S GC  N+ DS R+     ++GY+ V   DDA+L+++NTC   + A ++    +G
Sbjct: 5   RIGFVSLGCPKNLVDSERILTELRTEGYQVVPRYDDAELVIVNTCGFIDSAVQESLEAIG 64

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                         +  V+V GC+  A+  +I    P V  + GP +Y ++   + +   
Sbjct: 65  EA---------LNENGKVIVTGCLG-AKENQIREVHPKVLEITGPHSYEQVLSHVHQY-- 112

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                       + F  L + + G        A+L I EGC+  CTFC++P  RG   SR
Sbjct: 113 ------VPKPTHNPFTSL-VPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGDLDSR 165

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYSLSEI 257
            +  V+DEA++L+D GV E+ ++ Q+ +A+      R    +G+  K +   L   L+ +
Sbjct: 166 PIGSVLDEAKRLVDAGVKELLVISQDTSAYGADVKQRTGFWNGQPVKTSMVSLCEQLASL 225

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
              VRL Y   +P       + A G    ++PYL +P+Q  S +ILK M R        +
Sbjct: 226 GVWVRLHYVYPYPHVDDVIPLMAEG---KILPYLDIPLQHASPKILKLMKRPGAVERTLE 282

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
            I R R + PD+ + S FIVGFPGET++DF+  +D + +    +   FK+SP  G   + 
Sbjct: 283 RIKRWREICPDLTLRSTFIVGFPGETEEDFQMLLDFLTEAKLDRVGCFKFSPVEGASANA 342

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPWL 435
           + +QV E +K ER     +  +          +G+ + VLI++  +E   G+ +  +P +
Sbjct: 343 LPDQVPEEIKEERFHRFMQLQQAISTQRLQDKIGREVLVLIDEIDEEGAIGRSMADAPEI 402

Query: 436 QS-VVLNSK-NHNIGDIIKVRITDVKISTLYGELV 468
              V LN +    +GDI+KV++       L+G  V
Sbjct: 403 DGAVYLNGETGVKVGDIVKVKVEHADEYDLWGSRV 437


>gi|325283155|ref|YP_004255696.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Deinococcus proteolyticus MRP]
 gi|324314964|gb|ADY26079.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Deinococcus proteolyticus MRP]
          Length = 459

 Score =  382 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 159/447 (35%), Positives = 235/447 (52%), Gaps = 20/447 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +  V +YGCQMN YD+  ++    S G + V  +D AD ++LNTC +R K  +KV S LG
Sbjct: 2   KAHVVTYGCQMNEYDTHLVQSQLVSLGADMVEDIDSADFVLLNTCAVRGKPVDKVRSVLG 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +R  K         L+V + GC+AQ E  + + R   V+V++GP +   + + LE    
Sbjct: 62  ELRKEKAK-----RPLVVGMMGCLAQLEEGQQIARKFEVDVLIGPGSLLDIGKALE---S 113

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            +R    ++  E          G       + A LTI  GCD  CT+C+VP TRG ++SR
Sbjct: 114 NERFWALNFRDELHGHIPPAPQG------KLQAHLTIMRGCDHHCTYCIVPTTRGPQVSR 167

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK---CTFSDLLYSLSEIKGLVR 262
           S   ++ E    +  GV E+TLLGQNVNA  G           +F+DLL  +    G+ R
Sbjct: 168 SPDDILRELDMQLAAGVREVTLLGQNVNA-YGVDQGARLAGYPSFADLLRMVGA-SGIER 225

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +++TTSHP + ++ + +A  +   +  ++HLPVQSGSDR+L+ M R +   +Y   I++I
Sbjct: 226 IKFTTSHPMNFTEDVAQAMAETPAVCEFIHLPVQSGSDRVLRRMAREYNREKYLTHIEQI 285

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R   PD  + +D IVGFPGET++DF+ T+DL D++GY  A+ F YS R GTP       +
Sbjct: 286 RRHMPDAVLYTDIIVGFPGETEEDFQQTLDLYDEVGYDSAYMFIYSARPGTPSYKHFTDL 345

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
              VK ERL  L  K ++       A VG + EVL+       G L G +      V+  
Sbjct: 346 PREVKTERLQRLIAKQKDWSARRFAAKVGTVQEVLVRGDAYSPGFLEGHTRGQHPTVVPK 405

Query: 443 KNHNIG-DIIKVRITDVKISTLYGELV 468
                G  I +VRI       LYG++V
Sbjct: 406 AVGAEGAGIYQVRINHATPHMLYGQVV 432


>gi|118792628|ref|XP_320425.3| AGAP012104-PA [Anopheles gambiae str. PEST]
 gi|116116988|gb|EAA00300.4| AGAP012104-PA [Anopheles gambiae str. PEST]
          Length = 538

 Score =  382 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 149/485 (30%), Positives = 247/485 (50%), Gaps = 43/485 (8%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
            ++ F++ YGCQMN  D+  +  +  +  Y R  ++ +AD++++ TC IRE A + V++ 
Sbjct: 45  KRKVFLEVYGCQMNTNDTEIVWSILKAHQYHRTVNLKEADIVLMMTCAIREGAEDTVWNR 104

Query: 84  LGRIRNLKNSRIKEG-GDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
           L  +R LK  R   G   L + V GC+A+   ++++ +   V+VV GP  Y  LP LL  
Sbjct: 105 LKHLRLLKRKRETNGEKPLQIGVLGCMAERLKKQLVEKEHSVDVVAGPDAYKDLPRLLAI 164

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            + G++ ++   S+++ +  +  V      K   TAF++I  GCD  C++C+VP+TRG E
Sbjct: 165 GQRGQKAINVLLSLDETYADVVPVKLDRKSK---TAFVSIMRGCDNMCSYCIVPFTRGKE 221

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG-------------------- 242
            SR +  + +E  +L + G+ EITLLGQNVN++R    +                     
Sbjct: 222 RSRPIKSIREEVLQLENEGIREITLLGQNVNSYRDTSDESLEDAPKEATLLAPGFRTVYK 281

Query: 243 ---EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
                  F++LL  L+E    +R+R+T+ HP+D    +++       +   LHLP QSG+
Sbjct: 282 SKVGGLRFAELLTELAEAVPEMRIRFTSPHPKDFPVDVLETIAKYPNICNSLHLPAQSGN 341

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
            ++L+ M R +T   Y  +++ +R + P++ +SSDFI GF GE++ +F  T+ L++++GY
Sbjct: 342 TQVLERMRRGYTREAYLNLVEEVRRIIPNVTLSSDFICGFCGESEPEFADTVSLIEQVGY 401

Query: 360 AQAFSFKYSPRLGTPGSNML-EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI 418
             AF F YS R  T       + V E VK ERL  +    R +    N   V +   VLI
Sbjct: 402 HAAFLFAYSMREKTTAHRRYSDDVPEEVKQERLRRMIAAFRREAERLNSLFVDRTELVLI 461

Query: 419 EKHGKEK-GKLVGRSPWLQSVVLNSKNHN--------------IGDIIKVRITDVKISTL 463
           E + K     L GR+     V++ +                  +GD + VRIT      L
Sbjct: 462 EGYSKRSRTDLAGRNDGNVKVIVPAGQVRSDRAADRDDVRPLGVGDYVAVRITGSNSQIL 521

Query: 464 YGELV 468
            GE +
Sbjct: 522 KGEPL 526


>gi|183600133|ref|ZP_02961626.1| hypothetical protein PROSTU_03669 [Providencia stuartii ATCC 25827]
 gi|188022422|gb|EDU60462.1| hypothetical protein PROSTU_03669 [Providencia stuartii ATCC 25827]
          Length = 444

 Score =  382 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 134/462 (29%), Positives = 222/462 (48%), Gaps = 35/462 (7%)

Query: 19  DQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAE 78
           +   VP+  FV S GC  N+ DS R+     + GY+ V S DDADL+++NTC   + A +
Sbjct: 4   NTNPVPKIGFV-SLGCPKNLVDSERILTELRTDGYQVVPSYDDADLVIVNTCGFIDSAVQ 62

Query: 79  KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPE 138
           +    +G              +  V+V GC+  A+  +I    P V  + GP +Y ++  
Sbjct: 63  ESLEAIGEA---------LNENGKVIVTGCLG-AKENQIREVHPKVLEITGPHSYEQVLN 112

Query: 139 LLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
            +                 D F  L + + G        A+L I EGC+  CTFC++P  
Sbjct: 113 HVHHY--------VPKPEHDPFLSL-VPEQGVKLTPKHYAYLKISEGCNHRCTFCIIPSM 163

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA------WRGKGLDGE--KCTFSDL 250
           RG   SR++  V++EA++L+++GV E+ ++ Q+ +A       R    +G+  K +   L
Sbjct: 164 RGDLDSRAIGDVLNEAKRLVESGVKELLVISQDTSAYGVDVKHRTGFWEGKPVKTSMVGL 223

Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
              L+ +   VRL Y   +P       + A G    ++PYL +P+Q  S +ILK M R  
Sbjct: 224 CEQLASLGVWVRLHYVYPYPHVDEVIPLMAEG---KVLPYLDIPLQHASPKILKLMKRPG 280

Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370
                 + I R R + P++ + S FIVGFPGET++DF+  +D + +    +   FKYSP 
Sbjct: 281 AVERTLERIKRWREICPELTLRSTFIVGFPGETEEDFQMLLDFLQEARLDRVGCFKYSPV 340

Query: 371 LGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKL 428
            G   + + +QV E VK ER     +  ++         +G+ + V+I++   E   G+ 
Sbjct: 341 EGAKANELADQVPEEVKEERYHRFMQLQQQISTERLQEKIGRKLPVIIDEVDDEGAIGRS 400

Query: 429 VGRSPWLQS-VVLNSK-NHNIGDIIKVRITDVKISTLYGELV 468
           +  +P +   V LN + +   GDI+ V I       L+G +V
Sbjct: 401 MADAPEIDGMVYLNGEFDVKPGDIVNVLIEHADEYDLWGSIV 442


>gi|117617471|ref|YP_855900.1| hypothetical protein AHA_1361 [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|238065280|sp|A0KHZ9|RIMO_AERHH RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|117558878|gb|ABK35826.1| conserved hypothetical protein [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 442

 Score =  382 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 133/464 (28%), Positives = 219/464 (47%), Gaps = 35/464 (7%)

Query: 17  IVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA 76
           + +    P+  FV S GC  N+ DS R+     ++GY+ V S DDA+++V+NTC   + A
Sbjct: 1   MSNTKQAPKVGFV-SLGCPKNLVDSERILTQLRTEGYDVVPSYDDAEVVVVNTCGFIDSA 59

Query: 77  AEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL 136
            ++    +G                 V+V GC+  A+  +I    P V  + GP  Y  +
Sbjct: 60  VQESLEAIGEALAENGK---------VIVTGCLG-AKENQIREIHPKVLEITGPHAYEEV 109

Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
              + +          +    + F  L    G     R   A+L I EGC+  CTFC++P
Sbjct: 110 LGHVHKY--------VEKPTHNPFTSLVPAQGVKLTPRHY-AYLKISEGCNHRCTFCIIP 160

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA------WRGKGLDGE--KCTFS 248
             RG  +SR + +V+ EA++L + GV EI ++ Q+ +A       R    DG   K +  
Sbjct: 161 SMRGDLVSRPIGEVLAEAKRLKEAGVKEILVISQDTSAYGVDVKHRTGFYDGMPVKTSMV 220

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
            L   L+++   VRL Y   +P       +        ++PYL +P+Q  S RILK M R
Sbjct: 221 ALCEELAKLGMWVRLHYVYPYPHVDDVIPLM---RDGKVLPYLDIPLQHASPRILKLMKR 277

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
             T     + I + R + P+I + S FIVGFPGET+++F+  +D +DK    +   FKYS
Sbjct: 278 PGTVERTLERIQKWREICPEITLRSTFIVGFPGETEEEFQMLLDFIDKAELDRVGCFKYS 337

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--G 426
           P  G   + + + V E V+ ER     +  ++  +      VG+ + VLI++  +E   G
Sbjct: 338 PVEGAKANELPDPVPEEVQEERFQRFMELQQQVSIRKLARKVGKEMLVLIDEVDEEGATG 397

Query: 427 KLVGRSPWLQSVVLNSKN--HNIGDIIKVRITDVKISTLYGELV 468
           +    +P +  +V  +       GD++KVRI +     L+  L+
Sbjct: 398 RSAADAPEIDGLVYLNGETGLKPGDMVKVRIDEADEYDLWASLI 441


>gi|218248984|ref|YP_002374355.1| MiaB-like tRNA modifying enzyme YliG [Cyanothece sp. PCC 8801]
 gi|238065331|sp|B7JV66|RIMO_CYAP8 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|218169462|gb|ACK68199.1| MiaB-like tRNA modifying enzyme YliG [Cyanothece sp. PCC 8801]
          Length = 449

 Score =  382 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 130/445 (29%), Positives = 218/445 (48%), Gaps = 19/445 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
              +   GC+ N  DS  M  +    GY+   + + AD +++NTC   ++A ++    L 
Sbjct: 6   TIAISHLGCEKNRIDSEHMLGLLAEAGYQIDGNEELADYVIVNTCSFIQEARQESVRTLV 65

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +               ++++GC+AQ   EE+L   P    +VG   Y  + ++++R   
Sbjct: 66  ELAEANKK---------IIISGCMAQHFQEELLEELPEAVAIVGTGDYQTIVDVVQRVEN 116

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G+RV     S    F     +        GV A+L + EGCD  C FC++P+ RG + SR
Sbjct: 117 GERVKAI--STTPTFIADESIPRYRTTTEGV-AYLRVAEGCDYRCAFCIIPHLRGNQRSR 173

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           S+  +V EA++L D GV E+ L+ Q +    G  L GE    ++LL  L ++  +  +R 
Sbjct: 174 SIESIVTEAQQLADQGVQELILISQ-ITTNYGLDLYGEPK-LAELLRELGKVD-IPWVRI 230

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
             ++P  ++  +I A  +   ++PYL LP+Q    +ILK+MNR         II+RI+  
Sbjct: 231 HYAYPTGLTSPIIAAIRETPNVLPYLDLPLQHSHPQILKTMNRPWQGQVNDSIIERIKEA 290

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P+  + + FIVGFPGET++ F   ++ V +  +     F +S    TP   M  QV  +
Sbjct: 291 IPEAVLRTTFIVGFPGETEEHFDHLVNFVQRHEFDHVGVFTFSAEEETPAYQMSPQVPPD 350

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVLN 441
           +  ER   L +  +   +  N  C+GQ + VLIE+   + G+L+GRS    P +  +V  
Sbjct: 351 IAQERRNLLMEVQQPISIKKNQNCIGQTVPVLIEQENPQTGQLIGRSPRFAPEVDGLVYV 410

Query: 442 SKNHNIGDIIKVRITDVKISTLYGE 466
                +  I+ V+IT   +  LYG+
Sbjct: 411 QGEAPLNTIVPVQITHADVYDLYGK 435


>gi|168704786|ref|ZP_02737063.1| hypothetical protein GobsU_34937 [Gemmata obscuriglobus UQM 2246]
          Length = 467

 Score =  382 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 129/449 (28%), Positives = 222/449 (49%), Gaps = 16/449 (3%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           +   S GC  N  DS RM       GY        AD++++NTC   E A ++  + +  
Sbjct: 24  YAFISLGCPKNTVDSERMLGKLAQDGYSLQPDAAGADVVIVNTCGFIEPARQESLAVIRE 83

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           +  LK    K G    VVVAGC+A+ + + +L + P V+ +VG      +  +++RA   
Sbjct: 84  MLELK----KAGKVGSVVVAGCMAERQKDVLLEQVPEVDQIVGVFGREEIAAVVDRAVSQ 139

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNR-KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           +   D   S+       ++ D    R      A+L + EGCD+ CT+C +P  RG  +++
Sbjct: 140 R---DEQRSLFRPAPVRALEDTARLRITPRHFAYLKVSEGCDRLCTYCAIPKMRGKHVTK 196

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            + +V+ EAR+L  +GV E+ ++ Q+   + G  L G +   ++LL  L +++ +  +R 
Sbjct: 197 PIEEVIREARELAADGVRELIIVAQDTT-YYGMDLYG-RTRLAELLRELDKVENIEWIRT 254

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
             ++P  +SD LI+       ++PYL +P+Q  SDR+LK M RR       +++ R+R  
Sbjct: 255 LYAYPEHISDELIETFAGSKKIIPYLDMPLQHISDRVLKRMIRRVDRAATEKLLYRLREK 314

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            PD+AI + FI GFPGETD +F    D V +  + +   F YS   GTP   +   + E+
Sbjct: 315 WPDLAIRTTFITGFPGETDAEFEELRDFVAQFKFERVGVFPYSLEPGTPAEKLDGHLPED 374

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-----KGKLVGRSPWLQ-SVV 439
           VK  R+  + +  +     + +A VG+   V+I+    E     +G+    +P +  +V 
Sbjct: 375 VKQARVNAIMEVQQGVAFGWAEAQVGREHPVVIDGPDPEFANHFRGRTYADAPEIDCAVR 434

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
           +  KN   GD ++ +IT      L    +
Sbjct: 435 VKGKNLRPGDFVRAKITASDGYDLVARAI 463


>gi|261866815|ref|YP_003254737.1| ribosomal protein S12 methylthiotransferase [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261412147|gb|ACX81518.1| hypothetical protein D11S_0094 [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 443

 Score =  382 bits (981), Expect = e-104,   Method: Composition-based stats.
 Identities = 133/461 (28%), Positives = 213/461 (46%), Gaps = 40/461 (8%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
            P      S GC  N+ DS R+     S GY  + S ++ADL+++NTC   + A ++   
Sbjct: 3   TPPNIGFVSLGCPKNLVDSERILTELRSNGYNIIPSYENADLVIVNTCGFIDSAVQESLE 62

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +G                 V+V GC+  A+ ++I +  P V  + GP +Y  +   + +
Sbjct: 63  AIGEALEENGK---------VIVTGCLG-AKEDQIRQVHPKVLEISGPHSYETVMNQVHK 112

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
                            +E L     G        A+L I EGCD  CTFC++P  RG  
Sbjct: 113 Y--------VPKPQYSPYESLVPAQ-GVKLTPKHYAYLKISEGCDHRCTFCIIPSMRGDL 163

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNV----------NAWRGKGLDGE--KCTFSDL 250
            SR ++QV+DEA++L+D GV E+ ++ Q+           N  +    +G   K     L
Sbjct: 164 DSRPITQVLDEAKRLVDAGVKELLIVSQDTSAYALDQSKENQNKTVFWNGMPIKNNLISL 223

Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
              L  +   VRL Y   +P       + A G    L+PYL +P+Q  S +ILK+M R  
Sbjct: 224 CRQLGNLGVWVRLHYVYPYPHVDDLIPLMAEG---KLLPYLDIPLQHASPKILKTMKRPG 280

Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370
                 + I + R + P++ + S FIVGFPGET++DF+  +D +      +   FK+SP 
Sbjct: 281 KIDRTLERIQQWREICPELTLRSTFIVGFPGETEEDFQMLLDFLKAAQLDRVGCFKFSPV 340

Query: 371 LGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKL 428
            G P ++M +QV E VK ER     +  +E   +     +G+ + V++++   +   G+ 
Sbjct: 341 EGAPATDMPDQVPEEVKEERFHRFMQVQQEISAARLQQKIGKTLSVIVDEVNMKGVIGRS 400

Query: 429 VGRSPWLQSVVLNSKNH----NIGDIIKVRITDVKISTLYG 465
           +  +P +  VV          NIGD+I V ITD     L+G
Sbjct: 401 MADAPEIDGVVYVENQSQSAVNIGDVISVTITDADEYDLWG 441


>gi|218886426|ref|YP_002435747.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Desulfovibrio
           vulgaris str. 'Miyazaki F']
 gi|218757380|gb|ACL08279.1| RNA modification enzyme, MiaB family [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 478

 Score =  382 bits (981), Expect = e-104,   Method: Composition-based stats.
 Identities = 177/483 (36%), Positives = 255/483 (52%), Gaps = 50/483 (10%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + F + ++GCQMNV DS  +     ++G+     +  A + ++NTC +R+K  +KVYS L
Sbjct: 4   RTFHILTFGCQMNVNDSDWLARALVARGFTEAP-LGKARVNIVNTCSVRDKPEQKVYSVL 62

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER-- 142
           GRIR           D   VV GCVAQ  G     R P V +V G       P+ +ER  
Sbjct: 63  GRIRQATRKL----PDAFAVVGGCVAQQIGSGFFTRFPQVRLVFGGDGSSMAPQAIERLC 118

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           A  G R+   D+S E+  ER + +D G       +AF+ I +GCD FC +C+VPYTRG +
Sbjct: 119 AEPGLRLSLLDFS-EEYPERDAQLDAGPV---PPSAFVNIMQGCDNFCAYCIVPYTRGRQ 174

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL----------DGEKCTFSDLLY 252
            SR+   VV E  +L++ G  EITLLGQNVN+  G+            DG   TF++LL+
Sbjct: 175 KSRAADAVVRECAELVERGAKEITLLGQNVNS-YGQDAEAARQATVAGDGNAVTFAELLH 233

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
            ++ + GL RLR+ T HP+D++  +I A G LD L P LHLP+QSGSDRILK+M R++  
Sbjct: 234 RVAALPGLARLRFVTPHPKDIAPEVIDAFGTLDNLCPRLHLPMQSGSDRILKAMGRKYDM 293

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
             Y  I+ R+++ RPDI +S+D IVGFPGET+ DF  T+  +  +G+A +FSF YS R G
Sbjct: 294 ARYMDIVHRLKAARPDIQLSTDIIVGFPGETEQDFEDTLSAMRAVGFAASFSFCYSDRPG 353

Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK----- 427
           T    +  ++D   KA RL  LQ+   +         VG    VL++   ++ G      
Sbjct: 354 TRAEMLPGKLDAAEKAARLARLQEWQNDYTEQCLRNMVGLHTMVLLDGMSRKPGMATPES 413

Query: 428 ----------------LVGRSPWLQSVVLN-------SKNHNIGDIIKVRITDVKISTLY 464
                             GR P+ Q+V +             +G I+ V I + K  +L 
Sbjct: 414 HEGVHDGATGTPGGESWQGRDPYGQAVNVVMPPRTEGGPEGWLGRIVPVTIVEAKKHSLR 473

Query: 465 GEL 467
           G L
Sbjct: 474 GVL 476


>gi|251793811|ref|YP_003008543.1| ribosomal protein S12 methylthiotransferase [Aggregatibacter
           aphrophilus NJ8700]
 gi|247535210|gb|ACS98456.1| conserved hypothetical protein [Aggregatibacter aphrophilus NJ8700]
          Length = 443

 Score =  382 bits (981), Expect = e-104,   Method: Composition-based stats.
 Identities = 136/463 (29%), Positives = 218/463 (47%), Gaps = 41/463 (8%)

Query: 21  CIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKV 80
              P   FV S GC  N+ DS R+     + GY  + S ++ADL+++NTC   + A ++ 
Sbjct: 2   SATPNIGFV-SLGCPKNLVDSERILTELRANGYNIIPSYENADLVIVNTCGFIDSAVQES 60

Query: 81  YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140
              +G                 V+V GC+  A+ ++I +  P V  V GP +Y  +   +
Sbjct: 61  LEAIGEALEENGK---------VIVTGCLG-AKEDQIRQVHPKVLEVSGPHSYETVMTQV 110

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
            +               + +E L     G        A+L I EGCD  CTFC++P  RG
Sbjct: 111 HKY--------VPKPAYNPYESLMPAQ-GVKLTPKHYAYLKISEGCDHRCTFCIIPSMRG 161

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNV----------NAWRGKGLDGE--KCTFS 248
              SR ++QV+DEA++L+D GV E+ ++ Q+           N  +    +G   K    
Sbjct: 162 DLDSRPITQVLDEAKRLVDAGVKELLIVSQDTSAYALDQTKENQNKTVFWNGMPIKNNLI 221

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
            L   L  +   VRL Y   +P       + A G    L+PYL +P+Q  S +ILK+M R
Sbjct: 222 SLCQQLGNLGVWVRLHYVYPYPHVDELIPLMAAG---KLLPYLDIPLQHASPKILKAMKR 278

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
                   + I + R + P++ + S FIVGFPGET++DF+  +D + +    +   FK+S
Sbjct: 279 PGKIDHTLERIKQWREICPELTLRSTFIVGFPGETEEDFQILLDFLKEAQLDRVGCFKFS 338

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--G 426
           P  G P ++M +QV E VK ER     +  +E   +     +G+ + V++++  +E   G
Sbjct: 339 PVEGAPATDMPDQVPEEVKEERYHRFMQVQQEISSARLQQKIGKTLAVIVDEINEEGIIG 398

Query: 427 KLVGRSPWLQSVVLNSKNH----NIGDIIKVRITDVKISTLYG 465
           + +  +P +  VV          NIGDII V IT+     L+G
Sbjct: 399 RSMADAPEIDGVVYVENQSQSAVNIGDIISVTITEADEYDLWG 441


>gi|172056823|ref|YP_001813283.1| RNA modification protein [Exiguobacterium sibiricum 255-15]
 gi|171989344|gb|ACB60266.1| RNA modification enzyme, MiaB family [Exiguobacterium sibiricum
           255-15]
          Length = 444

 Score =  382 bits (981), Expect = e-104,   Method: Composition-based stats.
 Identities = 138/437 (31%), Positives = 236/437 (54%), Gaps = 18/437 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
               ++ GC++N Y++  +  +F   GY RV+  D AD+ V+NTC +     +K    + 
Sbjct: 3   TVAFQTLGCKVNHYETEAVWQLFKDAGYGRVDFADHADVYVVNTCTVTNTGDKKSRQVIR 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R        I++  D ++ V GC AQ    EI+   P V+VVVG Q  +++   +E+ R 
Sbjct: 63  RA-------IRQNPDSVICVTGCYAQTSPAEIMA-IPGVDVVVGTQDRHKMIGYIEQFRE 114

Query: 146 GKRVVDTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            +  ++   ++     +E L +            A L IQEGC+ FCTFC++P+ RG+  
Sbjct: 115 ERMPINAVGNIMKAKVYEELDVP----AFTDRTRASLKIQEGCNNFCTFCIIPWARGLMR 170

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR    V+ +A++L+D G  EI L G +     G G D +    + LL +L  + GL RL
Sbjct: 171 SRQPEDVLKQAQQLVDAGYKEIVLTGIHTG---GYGEDLKDYNLAKLLKALESVTGLERL 227

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R ++     ++D ++    D  +++ +LH+P+QSGSD +L+ M R++T  E+ + I R++
Sbjct: 228 RISSIEASQITDEVLDVLKDSPIVVRHLHVPIQSGSDTVLRRMRRKYTMAEFGKRITRLK 287

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
            V PD AI+SD IVGFPGET+++F  T + ++   +++   F YS R GTP + M +QVD
Sbjct: 288 EVLPDCAITSDVIVGFPGETEEEFMETFNFINDHKFSELHVFPYSKRTGTPAAMMDDQVD 347

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRSPWLQSVVLNS 442
           E VK +R+  L     +    +     G+++E++ E+  +E  G+LVG +     V +  
Sbjct: 348 EQVKEQRVARLIALSDQLAKEYASKYEGELLEIIPEEFSEEAGGRLVGYTDNYLRVAIEG 407

Query: 443 KNHNIGDIIKVRITDVK 459
               IG +++V+I+   
Sbjct: 408 DESLIGQLVRVKISKAG 424


>gi|30062317|ref|NP_836488.1| hypothetical protein S0828 [Shigella flexneri 2a str. 2457T]
 gi|30040562|gb|AAP16294.1| hypothetical protein S0828 [Shigella flexneri 2a str. 2457T]
 gi|281600159|gb|ADA73143.1| protein yliG [Shigella flexneri 2002017]
 gi|313650263|gb|EFS14675.1| RNA modification enzyme, MiaB family protein [Shigella flexneri 2a
           str. 2457T]
 gi|332763044|gb|EGJ93289.1| RNA modification enzyme, MiaB family protein [Shigella flexneri
           K-671]
 gi|333020987|gb|EGK40245.1| RNA modification enzyme, MiaB family protein [Shigella flexneri
           K-304]
          Length = 441

 Score =  382 bits (981), Expect = e-104,   Method: Composition-based stats.
 Identities = 135/460 (29%), Positives = 224/460 (48%), Gaps = 35/460 (7%)

Query: 22  IVPQ-RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKV 80
           + PQ +    S GC  N+ DS R+     ++GY+ V S DDA+++++NTC   + A ++ 
Sbjct: 4   VTPQPKIGFVSLGCPKNLVDSERILTELRTEGYDVVPSYDDANMVIVNTCGFIDSAVQES 63

Query: 81  YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140
              +G              +  V+V GC+  A+ ++I    P V  + GP +Y ++ E +
Sbjct: 64  LEAIGEA---------LNENGKVIVTGCLG-AKEDQIREVHPKVLEITGPHSYEQVLEHV 113

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
                            + F  L + + G        A+L I EGC+  CTFC++P  RG
Sbjct: 114 HHY--------VPKPKHNPFLSL-VPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRG 164

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA------WRGKGLDGE--KCTFSDLLY 252
             +SR + +V+ EA++L+D GV EI ++ Q+ +A       R    +GE  K +   L  
Sbjct: 165 DLMSRPIGEVLSEAKRLVDAGVKEILVISQDTSAYGVDVKHRTGFHNGEPVKTSMVSLCE 224

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
            LS++    RL Y   +P       + A G    ++PYL +P+Q  S RILK M R  + 
Sbjct: 225 QLSKLGIWTRLHYVYPYPHVDDVIPLMAEG---KILPYLDIPLQHASPRILKLMKRPGSV 281

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
                 I + R + P++ + S FIVGFPGET++DF+  +D + +    +   FKYSP  G
Sbjct: 282 DRQLARIKQWREICPELTLRSTFIVGFPGETEEDFQMLLDFLKEARLDRVGCFKYSPVEG 341

Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVG 430
              + + +QV E VK ER     +  ++         VG+ I V+I++  +E   G+ + 
Sbjct: 342 ADANALPDQVPEEVKEERWNRFMQLQQQISAERLQEKVGREILVIIDEVDEEGAIGRSMA 401

Query: 431 RSPWLQS-VVLNSK-NHNIGDIIKVRITDVKISTLYGELV 468
            +P +   V LN + N   GDI++V++       L+G  V
Sbjct: 402 DAPEIDGAVYLNGETNVKPGDILRVKVEHADEYDLWGSRV 441


>gi|283784597|ref|YP_003364462.1| radical SAM superfamily protein [Citrobacter rodentium ICC168]
 gi|282948051|emb|CBG87615.1| radical SAM superfamily protein [Citrobacter rodentium ICC168]
          Length = 444

 Score =  382 bits (981), Expect = e-104,   Method: Composition-based stats.
 Identities = 132/455 (29%), Positives = 219/455 (48%), Gaps = 34/455 (7%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC  N+ DS R+     ++GY  V S DDAD++++NTC   + A ++    +G
Sbjct: 12  KIGFVSLGCPKNLVDSERILTELRTEGYNVVPSYDDADMVIVNTCGFIDSAVQESLEAIG 71

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
              +             V+V GC+  A+ ++I    P V  + GP +Y ++ E +     
Sbjct: 72  EALSENGK---------VIVTGCLG-AKEDQIREVHPKVLEITGPHSYEQVLEHVHHY-- 119

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                       + F  L + + G        A+L I EGC+  CTFC++P  RG  +SR
Sbjct: 120 ------VPKPQHNPFLSL-VPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGDLVSR 172

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNA------WRGKGLDGE--KCTFSDLLYSLSEI 257
            +  V+ EA++L+D GV EI ++ Q+ +A       R    +GE  K +   L   LS++
Sbjct: 173 PIGDVLSEAKRLVDAGVKEILVISQDTSAYGVDVKHRTGFYNGEPVKTSMVSLCEQLSKL 232

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
               RL Y   +P       + A G    ++PYL +P+Q  S RILK M R  +      
Sbjct: 233 GIWTRLHYVYPYPHVDDVIPLMAEG---KILPYLDIPLQHASPRILKLMKRPGSVDRQLA 289

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
            I + R + P++ + S FIVGFPGET++DF+  +D + +    +   FKYSP  G   + 
Sbjct: 290 RIKQWREICPELTLRSTFIVGFPGETEEDFQMLLDFLKEARLDRVGCFKYSPVEGAGANE 349

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPWL 435
           + +QV E VK ER     +  ++         VG+ I V++++  +E   G+ +  +P +
Sbjct: 350 LPDQVPEEVKEERWNRFMQLQQQISAERLQEKVGREILVIVDEVDEEGAIGRSMADAPEI 409

Query: 436 QS-VVLNSK-NHNIGDIIKVRITDVKISTLYGELV 468
              V LN +     GD+I+V++ +     L+G  V
Sbjct: 410 DGAVYLNGETRVKPGDVIRVKVENADEYDLWGSRV 444


>gi|257062069|ref|YP_003139957.1| MiaB-like tRNA modifying enzyme YliG [Cyanothece sp. PCC 8802]
 gi|256592235|gb|ACV03122.1| MiaB-like tRNA modifying enzyme YliG [Cyanothece sp. PCC 8802]
          Length = 449

 Score =  382 bits (981), Expect = e-104,   Method: Composition-based stats.
 Identities = 130/445 (29%), Positives = 218/445 (48%), Gaps = 19/445 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
              +   GC+ N  DS  M  +    GY+   + + AD +++NTC   ++A ++    L 
Sbjct: 6   TIAISHLGCEKNRIDSEHMLGLLAEAGYQIDGNEELADYVIVNTCSFIQEARQESVRTLV 65

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +               ++++GC+AQ   EE+L   P    +VG   Y  + ++++R   
Sbjct: 66  ELAEANKK---------IIISGCMAQHFQEELLEELPEAVAIVGTGDYQTIVDVVQRVEN 116

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G+RV     S    F     +        GV A+L + EGCD  C FC++P+ RG + SR
Sbjct: 117 GERVKAI--STTPTFIADESIPRYRTTTEGV-AYLRVAEGCDYRCAFCIIPHLRGNQRSR 173

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           S+  +V EA++L D GV E+ L+ Q +    G  L GE    ++LL  L ++  +  +R 
Sbjct: 174 SIESIVTEAQQLADQGVQELILISQ-ITTNYGLDLYGEPK-LAELLRELGKVD-IPWVRI 230

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
             ++P  ++  +I A  +   ++PYL LP+Q    +ILK+MNR         II+RI+  
Sbjct: 231 HYAYPTGLTSPVIAAIRETPNVLPYLDLPLQHSHPQILKTMNRPWQGQVNDSIIERIKEA 290

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P+  + + FIVGFPGET++ F   ++ V +  +     F +S    TP   M  QV  +
Sbjct: 291 IPEAVLRTTFIVGFPGETEEHFDHLVNFVQRHEFDHVGVFTFSAEEETPAYQMSPQVPPD 350

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVLN 441
           +  ER   L +  +   +  N  C+GQ + VLIE+   + G+L+GRS    P +  +V  
Sbjct: 351 IAQERRNLLMEVQQPISIKKNQNCIGQTVPVLIEQENPQTGQLIGRSPRFAPEVDGLVYV 410

Query: 442 SKNHNIGDIIKVRITDVKISTLYGE 466
                +  I+ V+IT   +  LYG+
Sbjct: 411 QGEAPLNTIVPVQITHADVYDLYGK 435


>gi|303328189|ref|ZP_07358627.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Desulfovibrio sp.
           3_1_syn3]
 gi|302861519|gb|EFL84455.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Desulfovibrio sp.
           3_1_syn3]
          Length = 449

 Score =  382 bits (981), Expect = e-104,   Method: Composition-based stats.
 Identities = 162/452 (35%), Positives = 250/452 (55%), Gaps = 16/452 (3%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           +  + F + ++GCQMNV+DSL +     ++G+     +++A ++V+NTC +REK  +KV 
Sbjct: 1   MTEKSFHIITFGCQMNVHDSLWLARALTARGFTEAP-LEEAGVVVVNTCSVREKPEQKVM 59

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S LGRIR +          +LV VAGCVAQ  G     R   V +V G       P  +E
Sbjct: 60  SALGRIRQVTGG----NSGVLVAVAGCVAQQLGTAFFERESQVRLVAGSDGISGAPAAIE 115

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           R        D   S+ D        + G +   G  A++ I +GCD FC +C+VP+TRG 
Sbjct: 116 RLLAE---PDLRLSLLDFTSHYVEREPGADGPSGPVAYVNIMQGCDNFCAYCIVPFTRGR 172

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           + SR+   ++DE R  +D G  EITLLGQNVNA+ G    G+  +F+ LL  ++ + GL 
Sbjct: 173 QKSRATPAILDECRTRLDQGAREITLLGQNVNAF-GHDKSGDGVSFAQLLAQVAALPGLE 231

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           RLR+ T HP+DM    + A  +L  L P LHLP+Q+GSD +L  M RR+    + +++D 
Sbjct: 232 RLRFVTPHPKDMGLEDVAAFAELAPLCPRLHLPLQAGSDAVLTRMRRRYDRRGFLELVDS 291

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R  RPD+A+S+D IVGFPGE+++DF+AT+++++  G+  +FSF YS R G   +   ++
Sbjct: 292 LRKARPDLALSTDLIVGFPGESEEDFQATLEMMEACGFMSSFSFCYSDRPGARAALFPDK 351

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-----KLVGRSPWLQ 436
           +   V+ ERLL LQ         + DA V +   +LIE   ++ G        GR P+  
Sbjct: 352 IPPEVQQERLLRLQALQDRLSQRWLDARVDRETCLLIEGRSRKDGPDGESSWQGRDPYGA 411

Query: 437 SVVL--NSKNHNIGDIIKVRITDVKISTLYGE 466
            V +    +  + G ++ VRI + K  +L   
Sbjct: 412 LVHVALPPEADHTGRMVPVRIIEAKKHSLMAR 443


>gi|198415552|ref|XP_002127642.1| PREDICTED: similar to CDK5 regulatory subunit associated protein 1
           [Ciona intestinalis]
          Length = 618

 Score =  382 bits (981), Expect = e-104,   Method: Composition-based stats.
 Identities = 154/479 (32%), Positives = 254/479 (53%), Gaps = 42/479 (8%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +  + + YGCQMNV D      +    GY++   ++ AD+I+L TC IREKA +K+++ L
Sbjct: 117 KTVYFEMYGCQMNVNDGEYAWAILKKAGYKKTTDINTADVIMLVTCSIREKAEDKIWNRL 176

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            +++  K +    G    + + GC+A+   ++I+ +   V++V GP  Y  LP LLE+A 
Sbjct: 177 KQLKTHKQNYHTPG-YPKIGILGCMAERLKKKIVEKEKAVDIVAGPDAYRDLPRLLEQAT 235

Query: 145 FGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
                 ++T  SV++ +  +  V    + K   TAF++I  GCD  C++C+VP+TRG E 
Sbjct: 236 TDSTTAINTMLSVDETYADIMPVRFDQDSK---TAFVSIMRGCDNMCSYCIVPFTRGRER 292

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR--------------GKGLDGEKC---- 245
           SR ++ +++E R L D G+ ++ LLGQNVN++R              G    G K     
Sbjct: 293 SRPVTSILEEIRILSDQGIKQVNLLGQNVNSYRDLSETQHSAVDAIAGNMSRGFKTIYKP 352

Query: 246 -----TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300
                 F+DLL  +S++   +R+R+ + HP+D  D +++   + + +   +HLP QSGS 
Sbjct: 353 KHGGLRFADLLDRVSQVDPEMRIRFISPHPKDFPDEVLQIISERENICKQIHLPAQSGSS 412

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
            +L  M R HT  +Y  ++DRIR++ P++ +S+D I GF GETD D   T+ L+  + Y 
Sbjct: 413 NVLNLMRRGHTREDYLNLVDRIRTLIPNVVLSTDIISGFCGETDSDHEDTLSLMSLVKYE 472

Query: 361 QAFSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419
            AF FKYS R  T     M + V E +K++RL  + K  ++   + +   VG+ + VL+E
Sbjct: 473 YAFLFKYSIRQKTHAYHKMNDDVPEEIKSQRLQEVIKVYQDVLPTVHQKTVGKTLLVLVE 532

Query: 420 K-HGKEKGKLVGRSPWLQSVVLN------------SKNHNIGDIIKVRITDVKISTLYG 465
           K   K    L GR+     V +             +K    GD I V++T  K ++  G
Sbjct: 533 KDKTKVPNTLQGRTDGNVKVFIPNYDVASSVTSQSTKTICTGDYIAVKVTSYKPNSYRG 591


>gi|27367631|ref|NP_763158.1| ribosomal protein S12 methylthiotransferase [Vibrio vulnificus
           CMCP6]
 gi|81446986|sp|Q8D4N8|RIMO_VIBVU RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|27359203|gb|AAO08148.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Vibrio vulnificus
           CMCP6]
          Length = 469

 Score =  382 bits (981), Expect = e-104,   Method: Composition-based stats.
 Identities = 130/474 (27%), Positives = 215/474 (45%), Gaps = 37/474 (7%)

Query: 10  VAHMVSQIVDQCIVP---QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIV 66
            A    +   Q + P    +    S GC  N+ DS R+     ++GYE VNS  D+D+++
Sbjct: 16  TAKKTIEQQSQELTPSGGNKIGFVSLGCPKNLVDSERILTQLRTEGYEIVNSYHDSDVVI 75

Query: 67  LNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNV 126
           +NTC   + A ++    +G    LK +         V+V GC+   E +EI    P V  
Sbjct: 76  VNTCGFIDSAVQESLDTIGEA--LKENGK-------VIVTGCLGARE-DEIREVHPGVLG 125

Query: 127 VVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGC 186
           + GP  Y  + E + +              E       + D G        A+L I EGC
Sbjct: 126 ITGPHAYENVLEHVHQFAP---------KPEHNPFTSLVPDHGVKLTPKHYAYLKISEGC 176

Query: 187 DKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK------GL 240
           +  CTFC++P  RG  +SR + +++ EA +L + GV E+ ++ Q+ +A+           
Sbjct: 177 NHRCTFCIIPSMRGDLVSRPVGEILSEAERLKNAGVKELLVISQDTSAYGVDSKHSLGFA 236

Query: 241 DGEKCT--FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
           +G         L   L ++   VRL Y   +P       + A G    ++PYL +P Q  
Sbjct: 237 NGSPVRQNIKALSEELGKMGIWVRLHYVYPYPHVDDLIPLMAEG---KILPYLDIPFQHA 293

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           S  +LK+M R   A      I + R + P++ I S FIVGFPGETD+DF   ++ + +  
Sbjct: 294 SPNVLKAMKRPGRAERTLDQIKKWREICPELVIRSTFIVGFPGETDEDFEMLLEWLKEAQ 353

Query: 359 YAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI 418
             +   FKYSP  G   +++ +Q+ E VK ER  C     +E   +     +G  ++V+I
Sbjct: 354 LDRVGCFKYSPVEGAAANDIDDQISEEVKQERFECFMLVQQEISAAKLQKRIGSTMKVII 413

Query: 419 EKHGKEK--GKLVGRSPWLQSVVLNSKN--HNIGDIIKVRITDVKISTLYGELV 468
           ++  +E   G+    +P +  +V  +       G+++ V I       L+G LV
Sbjct: 414 DEVDEEGAIGRTYADAPEIDGLVYLNGETSLKAGELVDVLIEHADEYDLWGSLV 467


>gi|293376256|ref|ZP_06622499.1| MiaB-like protein [Turicibacter sanguinis PC909]
 gi|325845151|ref|ZP_08168460.1| tRNA methylthiotransferase YqeV [Turicibacter sp. HGF1]
 gi|292645148|gb|EFF63215.1| MiaB-like protein [Turicibacter sanguinis PC909]
 gi|325488816|gb|EGC91216.1| tRNA methylthiotransferase YqeV [Turicibacter sp. HGF1]
          Length = 434

 Score =  381 bits (980), Expect = e-104,   Method: Composition-based stats.
 Identities = 137/449 (30%), Positives = 247/449 (55%), Gaps = 19/449 (4%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           +P      + GC++N Y++  + ++F ++GYE+V+    AD+ ++NTC +     +K   
Sbjct: 1   MP-TVAFHTLGCKVNHYETEAVWELFKNEGYEKVDFKGVADVYIINTCTVTNTGDKKSRQ 59

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            + R        I+   + ++ V GC AQ + +EI+     V++V+G     ++P+L+++
Sbjct: 60  VIRRA-------IRRNPEAVMCVMGCYAQTKPKEIMD-IEGVDIVIGTHGRDQIPQLVQK 111

Query: 143 ARFGKRVVDTDYSV--EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
            R  ++ +    +V   D FE L++            A L IQ+GC+ FCT+C++P+ RG
Sbjct: 112 YREERQPISQIQNVFKVDGFETLNVSQ----FSDRTRATLKIQDGCNNFCTYCIIPWARG 167

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
              S+    V+D+ ++L+ NG CE+ L G +  A+   G D E  +F  LL  L +I GL
Sbjct: 168 TVRSQKPEIVIDQVKQLVANGHCEVVLTGIHTAAY---GEDLEDYSFGKLLQDLIKIDGL 224

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R ++    +M+D +I A    D ++ +LH+P+Q+GS+ ILK M R +T  E+   + 
Sbjct: 225 KRIRISSIEASEMTDDVITAMKMSDKIVNHLHMPLQAGSNEILKGMKRPYTLAEFEAKVK 284

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
            +R +  ++AI++D IVGFPGET++ F  T++ + +IG+++   F YS R GTP + M  
Sbjct: 285 ELRELFDNLAITTDVIVGFPGETEELFNETVETIKRIGFSELHVFPYSVRNGTPAARMEN 344

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVV 439
           QV E VK+ R+  L     +    +  +C G+I++V+ E+    ++G LVG +     V 
Sbjct: 345 QVPEMVKSMRVNKLLALSEQLAKEYASSCEGKILQVIPEEASHTKEGYLVGHASNYVKVE 404

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
              +   IG+++ V++         GE+V
Sbjct: 405 FKGETDLIGEVVPVKVVKADYPICLGEIV 433


>gi|260892512|ref|YP_003238609.1| RNA modification enzyme, MiaB family [Ammonifex degensii KC4]
 gi|260864653|gb|ACX51759.1| RNA modification enzyme, MiaB family [Ammonifex degensii KC4]
          Length = 437

 Score =  381 bits (980), Expect = e-104,   Method: Composition-based stats.
 Identities = 154/444 (34%), Positives = 231/444 (52%), Gaps = 17/444 (3%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P R    + GC++N  D+  M  +F  +GY+ V+  + AD+ V+NTC +   AA+K    
Sbjct: 9   PLRVAFYTLGCKVNQCDTAEMAALFAQRGYQIVDFEEPADVYVVNTCVVTHTAAQKSRQA 68

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           + R         +     LVVV GC AQ +  E++   P V VV G      LP+L+E A
Sbjct: 69  IRRA-------WRRNPRSLVVVTGCYAQLDP-ELISSLPGVRVVAGTGAKKELPDLVEEA 120

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           R   R +     +   FE L     G  R     AFL +QEGC  FCT+C+VPY RG   
Sbjct: 121 RCSGRQLVAVKDIPSSFEDLPAYFFGRTR-----AFLKVQEGCRDFCTYCIVPYVRGPCR 175

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR L  V+  AR+ +  G  E+ L G ++    G+ L     T + L+  L E   L RL
Sbjct: 176 SRPLEAVLKAARRFLQEGFVELVLTGTHLG-LYGQDLTPS-LTLAHLVERLLEFPELKRL 233

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R ++  P +++  LI+         P+LH+P+QSG D IL+ M RR+T  +YR+++ R+R
Sbjct: 234 RLSSIEPLEVTADLIELMRRDSRFCPHLHIPLQSGDDEILRRMGRRYTTAQYRELVARLR 293

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              PDIAI++D +VGFPGET++ F  T  L+ ++  A    F YSPR GTP +    +V 
Sbjct: 294 EAVPDIAITTDVMVGFPGETEEAFARTERLLRELELAGMHVFPYSPRPGTPAARFPGRVP 353

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
                 RL  L     E +  +    +G+ +EVL+EK  +++G  +G SP    V++   
Sbjct: 354 WPEVERRLERLLLLRDELRQRYAQRFLGRDVEVLLEKVEEKQG--LGLSPHYLPVIVFGS 411

Query: 444 NHNIGDIIKVRITDVKISTLYGEL 467
             + G +++VR+  V   TLYG L
Sbjct: 412 LLSPGKLVQVRVERVAEGTLYGHL 435


>gi|257468233|ref|ZP_05632329.1| 2-methylthioadenine synthetase [Fusobacterium ulcerans ATCC 49185]
 gi|317062515|ref|ZP_07927000.1| radical SAM domain-containing protein [Fusobacterium ulcerans ATCC
           49185]
 gi|313688191|gb|EFS25026.1| radical SAM domain-containing protein [Fusobacterium ulcerans ATCC
           49185]
          Length = 445

 Score =  381 bits (980), Expect = e-104,   Method: Composition-based stats.
 Identities = 139/450 (30%), Positives = 222/450 (49%), Gaps = 17/450 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +F + S GC  N+ DS     +    +G+E  + + +AD+I++NTC     A ++    +
Sbjct: 2   KFALISLGCSKNLVDSENFIGILVNKRGFEVTSELGEADIIIVNTCGFIGDAKKESIETI 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             + +LK      G    ++V GC+AQ    EIL+  P V+ V+G     ++ +++E   
Sbjct: 62  LEVSDLK----INGNLKKIIVTGCLAQRYAGEILKELPEVDAVIGTGEIDKIEKVVEEIL 117

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
             KRVV+   S +  F   S  D         TA+L I EGCD+ CT+C++P  RG   S
Sbjct: 118 ADKRVVE---STKMDFLANSETDR-VLTTASHTAYLKIAEGCDRRCTYCIIPQLRGKLRS 173

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R++  ++ EA KL+ +GV E+ LL Q      G  L  EK + + L+  L +I GL  LR
Sbjct: 174 RTIEDILKEANKLVASGVKELNLLAQETTE-YGIDLYKEK-SLARLMKELVKIDGLKWLR 231

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
                P  ++D LI    + D +  Y  +PVQ  SD IL+ M R  +    + I++RIR 
Sbjct: 232 TYYMFPDSLTDELIDVMKNEDKICKYFDIPVQHISDNILQQMGRAKSGDHIKGILNRIRK 291

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             PD  I +  IVGFPGET+++F      +++  +     FKYS    T   +M  QV E
Sbjct: 292 EIPDAVIRTAVIVGFPGETEENFEELKAFIEEYKFDYVGVFKYSREEDTKAYDMENQVPE 351

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GRSP----WLQS-V 438
            +K +R + +     +   S N   +GQI+EV+I+    E   L+ GR+      +   V
Sbjct: 352 EIKEKRWVEITNLQSKIAESKNRNMLGQIVEVMIDGVSTESEYLLEGRTKGQALEIDGKV 411

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           + N      G+I+KV++         G +V
Sbjct: 412 LTNDGTAKPGEIVKVKLEQNFDYDFIGPIV 441


>gi|110803355|ref|YP_698962.1| MiaB-like tRNA modifying enzyme YliG [Clostridium perfringens
           SM101]
 gi|123341726|sp|Q0SSE5|RIMO_CLOPS RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|110683856|gb|ABG87226.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Clostridium
           perfringens SM101]
          Length = 445

 Score =  381 bits (980), Expect = e-103,   Method: Composition-based stats.
 Identities = 142/453 (31%), Positives = 224/453 (49%), Gaps = 21/453 (4%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           +   +  + S GC  N  DS  M  M  ++ YE  N+  +AD+I++NTC   EKA ++  
Sbjct: 1   MAKYKVGMVSLGCDKNRVDSEIMLGMVQNE-YELTNNPKEADIIIVNTCGFIEKAKQESI 59

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           + +  +   K S        L++  GC+ Q  G+E+L   P +++++G   Y ++ E + 
Sbjct: 60  NTILDMAKYKTSH----NCKLLIATGCLTQRYGDELLELMPEIDIMLGVNDYAKINEAIM 115

Query: 142 RARFG--KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
               G  ++V  T+YS     E L ++          TA+L I EGCD FCT+C++P  R
Sbjct: 116 NFINGNNEKVKATNYSDVSINEGLRLI-----TTDKATAYLRIAEGCDNFCTYCIIPKIR 170

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G   SR+L  +V+EA+KL +NGV E+ L+ Q+     G  + GEK     +L  L++I+G
Sbjct: 171 GKFRSRALESIVEEAKKLAENGVKELILIAQDTT-NYGIDIYGEKK-LHLVLRELAKIEG 228

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           +  +R    +P  + D LIK     D +  YL LP+Q  S+ +LK M R+ T  E    I
Sbjct: 229 IEWIRVLYCYPEAIYDELIKEISVNDKVCNYLDLPIQHISNNVLKRMGRKTTKEEIIGKI 288

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
           + +R   P+I + +  IVGFPGE+ +DF    D +  I   +   F YS   GTP + M 
Sbjct: 289 NDLRKNVPNIVLRTSLIVGFPGESCEDFNELKDFIKTIKLDKVGVFTYSREEGTPAAIME 348

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWL 435
           +Q+DE VK  R   +    +E     N   +G+  +VLIEK   E    +GRS    P +
Sbjct: 349 DQIDEEVKKAREEEIMLLQKELSEEINKNKLGREYDVLIEKFNGE--YYIGRSYEMAPDI 406

Query: 436 QS-VVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
              + +           KV+I       L G +
Sbjct: 407 DGCIYVKGNGAKKDQFCKVKIEKALEYDLVGVV 439


>gi|194433148|ref|ZP_03065430.1| MiaB-like tRNA modifying enzyme YliG [Shigella dysenteriae 1012]
 gi|194418645|gb|EDX34732.1| MiaB-like tRNA modifying enzyme YliG [Shigella dysenteriae 1012]
 gi|332091042|gb|EGI96132.1| RNA modification enzyme, MiaB family protein [Shigella dysenteriae
           155-74]
          Length = 441

 Score =  381 bits (980), Expect = e-103,   Method: Composition-based stats.
 Identities = 136/460 (29%), Positives = 224/460 (48%), Gaps = 35/460 (7%)

Query: 22  IVPQ-RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKV 80
           + PQ +    S GC  N+ DS R+     ++GY+ V S DDAD++++NTC   + A ++ 
Sbjct: 4   VTPQPKIGFVSLGCPKNLVDSERILTELRTEGYDVVPSYDDADMVIVNTCGFIDSAVQES 63

Query: 81  YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140
              +G              +  V+V GC+  A+ ++I    P V  + GP +Y ++ E +
Sbjct: 64  LEAIGEA---------LNENGKVIVTGCLG-AKEDQIREVHPKVLEITGPHSYEQVLEHV 113

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
                            + F  L + + G        A+L I EGC+  CTFC++P  RG
Sbjct: 114 HHY--------VPKPKHNPFLSL-VPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRG 164

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA------WRGKGLDGE--KCTFSDLLY 252
             +SR + +V+ EA++L+D GV EI ++ Q+ +A       R    +GE  K +   L  
Sbjct: 165 DLVSRPIGEVLSEAKRLVDAGVKEILVISQDTSAYGVDVKHRTGFHNGEPVKTSMVSLCE 224

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
            LS++    RL Y   +P       + A G    ++PYL +P+Q  S RILK M R  + 
Sbjct: 225 QLSKLGIWTRLHYVYPYPHVDDVIPLMAEG---KILPYLDIPLQHASPRILKLMKRPGSV 281

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
                 I + R + P++ + S FIVGFPGET++DF+  +D + +    +   FKYSP  G
Sbjct: 282 DRQLARIKQWREICPELTLRSTFIVGFPGETEEDFQMLLDFLKEARLDRVGCFKYSPVEG 341

Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVG 430
              + + +QV E VK ER     +  ++         VG+ I V+I++  +E   G+ + 
Sbjct: 342 ADTNALPDQVPEEVKEERWNRFMQLQQQISAERLQEKVGREILVIIDEVDEEGAIGRSMA 401

Query: 431 RSPWLQS-VVLNSK-NHNIGDIIKVRITDVKISTLYGELV 468
            +P +   V LN + N   GDI++V++       L+G  V
Sbjct: 402 DAPEIDGAVYLNGETNVKPGDILRVKVEHADEYDLWGSRV 441


>gi|238065376|sp|A8AIT5|RIMO_CITK8 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
          Length = 441

 Score =  381 bits (980), Expect = e-103,   Method: Composition-based stats.
 Identities = 137/455 (30%), Positives = 221/455 (48%), Gaps = 34/455 (7%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC  N+ DS R+     ++GY+ V S DDAD++++NTC   + A ++    +G
Sbjct: 9   KIGFVSLGCPKNLVDSERILTELRTEGYDVVPSYDDADMVIVNTCGFIDSAVQESLEAIG 68

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                            V+V GC+  A+ ++I    P V  + GP +Y ++ E +     
Sbjct: 69  EALTENGK---------VIVTGCLG-AKVDQIREVHPKVLEITGPHSYEQVLEHVHHY-- 116

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                       + F  L + + G        A+L I EGC+  CTFC++P  RG  +SR
Sbjct: 117 ------VPKPKHNPFLSL-VPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGDLVSR 169

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNA------WRGKGLDGE--KCTFSDLLYSLSEI 257
            + +V+ EA++L+D GV EI ++ Q+ +A       R    +GE  K +  DL   LS++
Sbjct: 170 PIGEVLSEAKRLVDAGVKEILVISQDTSAYGVDVKHRTGFHNGEPVKTSMVDLCEQLSKL 229

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
               RL Y   +P       + A G    ++PYL +P+Q  S RILK M R         
Sbjct: 230 GIWTRLHYVYPYPHVDDVIPLMAEG---KILPYLDIPLQHASPRILKLMKRPGAVDRQLA 286

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
            I + R + P++ + S FIVGFPGET+DDF+  +D + +    +   FKYSP  G   + 
Sbjct: 287 RIKQWREICPELTLRSTFIVGFPGETEDDFQMLLDFLKEARLDRVGCFKYSPVEGAGANA 346

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPWL 435
           + +QV E VK ER     +  ++         VG+ I V+I++  KE   G+ +  +P +
Sbjct: 347 LPDQVPEEVKEERWNRFMQLQQQISAERLQEKVGREILVIIDEVDKEGAIGRSMADAPEI 406

Query: 436 QS-VVLNSK-NHNIGDIIKVRITDVKISTLYGELV 468
              V LN + N   GD+I+V++ +     L+G  V
Sbjct: 407 DGAVYLNGETNVKPGDVIRVKVDNADEYDLWGSRV 441


>gi|291542169|emb|CBL15279.1| SSU ribosomal protein S12P methylthiotransferase [Ruminococcus
           bromii L2-63]
          Length = 446

 Score =  381 bits (980), Expect = e-103,   Method: Composition-based stats.
 Identities = 124/450 (27%), Positives = 209/450 (46%), Gaps = 18/450 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +  + S GC  N  D+  +     ++G+  VN   DAD +++NTC   E A ++  + + 
Sbjct: 4   KVGIVSLGCAKNQVDAEMLLYTLKNRGFIIVNDPADADAVIVNTCGFIESAKQESINEII 63

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +  LK+     G    ++V GC+AQ    EI  +   V+ V+G      + +++     
Sbjct: 64  ELGKLKDE----GKIKAIIVTGCLAQRYKSEISEQLYEVDSVIGIGANETIADIVLETLD 119

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G++       V      L +  G        TA+L I EGCD  C++C +P  RG   SR
Sbjct: 120 GQKCESFPDKV-----CLPLEGGRILSTPPYTAYLKIAEGCDNRCSYCAIPMIRGRFRSR 174

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            +  VV EA  L + GV E+ ++ Q+     G+   G K   ++LL  L  I G   +R 
Sbjct: 175 DIEDVVKEAEGLAERGVKELNVIAQDTT-RFGEDKYG-KPMLAELLRRLCRIDGFKWIRV 232

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
              +P  ++D LI      D ++ Y+ +P+Q     +L+ MNR         ++++I+  
Sbjct: 233 LYCYPDRITDELIDTIAGEDKIVKYMDIPLQHCDGDVLRRMNRHGDRESLTALMNKIKDK 292

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P++   S FI GFPGET++ F    +    + + +   F YSP   T  + M +Q+DE 
Sbjct: 293 IPNVIFRSTFITGFPGETEEQFNELAEFAADMKFQRLGCFAYSPEEDTKAAEMPDQIDEE 352

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVL- 440
           +K +R   + +  ++    + ++ VG+ IEVL+E   K      GRS    P +   V  
Sbjct: 353 IKQKRADIIMEHQQQVMAEYCESLVGKEIEVLVEGFDKLAECFFGRSYADAPEVDGCVFF 412

Query: 441 --NSKNHNIGDIIKVRITDVKISTLYGELV 468
             + +    GD +KVR+TD       GE V
Sbjct: 413 TCDGEKPKAGDFVKVRVTDYTGCDPVGEFV 442


>gi|18310657|ref|NP_562591.1| hypothetical protein CPE1675 [Clostridium perfringens str. 13]
 gi|168207519|ref|ZP_02633524.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Clostridium
           perfringens E str. JGS1987]
 gi|168211437|ref|ZP_02637062.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Clostridium
           perfringens B str. ATCC 3626]
 gi|168214492|ref|ZP_02640117.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Clostridium
           perfringens CPE str. F4969]
 gi|168216962|ref|ZP_02642587.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Clostridium
           perfringens NCTC 8239]
 gi|182626371|ref|ZP_02954125.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Clostridium
           perfringens D str. JGS1721]
 gi|261876147|ref|YP_696362.2| putative tRNA modifying protein [Clostridium perfringens ATCC
           13124]
 gi|81766992|sp|Q8XJS9|RIMO_CLOPE RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|238065375|sp|Q0TPS8|RIMO_CLOP1 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|18145338|dbj|BAB81381.1| conserved hypothetical protein [Clostridium perfringens str. 13]
 gi|170661121|gb|EDT13804.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Clostridium
           perfringens E str. JGS1987]
 gi|170710553|gb|EDT22735.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Clostridium
           perfringens B str. ATCC 3626]
 gi|170714028|gb|EDT26210.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Clostridium
           perfringens CPE str. F4969]
 gi|177908322|gb|EDT70870.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Clostridium
           perfringens D str. JGS1721]
 gi|182380907|gb|EDT78386.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Clostridium
           perfringens NCTC 8239]
 gi|255529895|gb|ABG84692.2| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Clostridium
           perfringens ATCC 13124]
          Length = 445

 Score =  381 bits (980), Expect = e-103,   Method: Composition-based stats.
 Identities = 143/453 (31%), Positives = 224/453 (49%), Gaps = 21/453 (4%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           +   +  + S GC  N  DS  M  M  ++ YE  N+  +AD+I++NTC   EKA ++  
Sbjct: 1   MAKYKVGMVSLGCDKNRVDSEIMLGMVQNE-YELTNNPKEADIIIVNTCGFIEKAKQESI 59

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           + +  +   K S        L++  GC+ Q  G+E+L   P +++++G   Y ++ E + 
Sbjct: 60  NTILDMAKYKTSH----NCKLLIATGCLTQRYGDELLELMPEIDIMLGVNDYAKINEAIM 115

Query: 142 RARFG--KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
               G  ++V  T+YS     E L ++          TA+L I EGCD FCT+C++P  R
Sbjct: 116 NFINGNNEKVKATNYSDVSINEGLRLI-----TTDKATAYLRIAEGCDNFCTYCIIPKIR 170

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G   SR+L  +V+EA+KL +NGV E+ L+ Q+     G  + GEK     +L  L++I+G
Sbjct: 171 GKFRSRALESIVEEAKKLAENGVKELILIAQDTT-NYGIDIYGEKK-LHLVLRELAKIEG 228

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           +  +R    +P  + D LIK     D +  YL LP+Q  S+ +LK M R+ T  E    I
Sbjct: 229 IEWIRVLYCYPEAIYDELIKEISVNDKVCNYLDLPIQHISNNVLKRMGRKTTKEEIIGKI 288

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
           + +R   P+I + +  IVGFPGE+ +DF    D +  I   +   F YS   GTP + M 
Sbjct: 289 NDLRKNVPNIVLRTSLIVGFPGESCEDFNELKDFIKTIKLDKVGVFTYSREEGTPAAIME 348

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWL 435
           +Q+DE VK  R   +    +E     N   VG+  +VLIEK   E    +GRS    P +
Sbjct: 349 DQIDEEVKKAREEEIMLLQKEVSEEINKNKVGREYDVLIEKFNGE--YYIGRSYEMAPDI 406

Query: 436 QS-VVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
              + +           KV+I       L G +
Sbjct: 407 DGCIYVKGNGAKKDQFCKVKIEKALEYDLVGVV 439


>gi|328713992|ref|XP_003245232.1| PREDICTED: CDK5 regulatory subunit-associated protein 1-like
           [Acyrthosiphon pisum]
          Length = 580

 Score =  381 bits (980), Expect = e-103,   Method: Composition-based stats.
 Identities = 146/476 (30%), Positives = 244/476 (51%), Gaps = 39/476 (8%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ +++ YGCQMNV D+  +  +  ++GY + NS+ +AD+I+L TC IR+ A  K+++ +
Sbjct: 86  RKVYIEVYGCQMNVNDAEIVWSILQNEGYIKTNSIYEADVILLVTCAIRDSAENKIWTRI 145

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPI-VNVVVGPQTYYRLPELLERA 143
            ++R++K  R K    L + + GC+A+   E+++  S   +++V GP +Y  LP LL + 
Sbjct: 146 KQLRSVKRWRGKLDP-LKIGILGCMAERLKEKLVSDSKGAIDLVAGPDSYRDLPRLLAKT 204

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             G++ ++   S ++ +  +  V    +    VTA+++I  GCD  CT+C+VP+TRG E 
Sbjct: 205 EAGQKAINVLLSFDETYAEIKPVKLNDD---NVTAYVSIMRGCDNMCTYCIVPFTRGRER 261

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG------------------KGLDGEKC 245
           SR +  ++DE + L + G  E+TLLGQNVN++R                   K +  EK 
Sbjct: 262 SRPVESILDEIKYLSEKGFKEVTLLGQNVNSYRDLSTSSFFMPSTNTLASGFKTVYKEKK 321

Query: 246 ---TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
               F++LL  +S++   +R+R+T+ HP+D  D ++    +   +   LHLP Q GS  +
Sbjct: 322 GGVRFAELLNRVSDVDPEMRIRFTSPHPKDFPDEVLDIILEKPNVCKNLHLPAQCGSTEV 381

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           L+ M R +T   Y  +   IR   P +  SSDFI GF GETD++F  T+ L++ + Y  A
Sbjct: 382 LEKMRRGYTRESYLSLAQHIRDRLPGVTYSSDFIAGFCGETDEEFEDTISLMETVKYHNA 441

Query: 363 FSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKH 421
           F F YS R  T       + V   +K ER+  +    R      N   V     +L+E  
Sbjct: 442 FLFAYSMREKTTAYRRYKDDVPHEIKVERVKKMFNVFRRDAEILNKQFVNTEQLMLVEGE 501

Query: 422 GKE-KGKLVGRSPWLQSVVLNSKNH-----------NIGDIIKVRITDVKISTLYG 465
            +     L GR+     V++ +                GD I V+I +     L G
Sbjct: 502 SRRGPSDLCGRTDGNIKVIIPNTKLPLEESSFNQDIKPGDYITVKIIESNSQVLKG 557


>gi|145521116|ref|XP_001446413.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124413891|emb|CAK79016.1| unnamed protein product [Paramecium tetraurelia]
          Length = 504

 Score =  381 bits (980), Expect = e-103,   Method: Composition-based stats.
 Identities = 141/466 (30%), Positives = 247/466 (53%), Gaps = 38/466 (8%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +FF+++YGCQMN  DS  ++ +  S+GY   N + +AD+I LNTC IR  A +KV+  + 
Sbjct: 46  KFFIETYGCQMNANDSQIVQSILSSEGYSNTNDISEADIIFLNTCSIRANAEKKVFQRMS 105

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +++          + ++ + GC+A+   E++  +    N++VGP +Y  LP LL   + 
Sbjct: 106 ELKS---------QNKVLGILGCMAERLKEQLFVQ--GANIIVGPDSYKSLPTLLNSFQL 154

Query: 146 GK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            + + +DT+ S+ + ++ +  +    N    +T +++I  GC+  C+FCVVP+TRG E S
Sbjct: 155 TRDKQIDTNLSLTETYDDILPI----NPTDSITTYVSIMRGCNNMCSFCVVPFTRGRERS 210

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-------------------GEKC 245
           R+   +++E + L   G+ E+TLLGQNVN++  +                      G   
Sbjct: 211 RNPESILEEIQILTQKGIKEVTLLGQNVNSYFFQDEKISSQHENTVGFTELYKLRSGNGL 270

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
            F  LL  ++      R+R+T+ HP++    +++       +   +H+P+QSGSD ILK 
Sbjct: 271 RFDQLLDEIAVKFPKTRIRFTSPHPKNFPKKVLEVIAKHPNICKNIHIPIQSGSDEILKK 330

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           M R +T      + +  R++ P++ +S+D IVGF  ET+ DF  T+ L+  + +  AF F
Sbjct: 331 MRRNYTRGAIVDLCNEARTLIPNVTLSTDVIVGFCDETEYDFEQTLSLLQLVQFENAFMF 390

Query: 366 KYSPRLGTPGSN-MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE 424
            YS R  T     + + V E+VK+ RL  L ++  +     N   +G+   VL+E+ G +
Sbjct: 391 AYSMREKTHAYRNLQDNVPESVKSSRLEKLIEQQHKIMNYKNSLEIGKKHIVLVEQLGNK 450

Query: 425 KGKLVGRSPWLQSVVLNSKN--HNIGDIIKVRITDVKISTLYGELV 468
             +L GR+   + VV  + N  + IGD ++V I    + TL G  +
Sbjct: 451 PNQLKGRTDSNKGVVFQNDNNIYAIGDFVEVEILGSGLKTLSGRPL 496


>gi|302814840|ref|XP_002989103.1| hypothetical protein SELMODRAFT_235679 [Selaginella moellendorffii]
 gi|300143204|gb|EFJ09897.1| hypothetical protein SELMODRAFT_235679 [Selaginella moellendorffii]
          Length = 507

 Score =  381 bits (980), Expect = e-103,   Method: Composition-based stats.
 Identities = 157/497 (31%), Positives = 243/497 (48%), Gaps = 67/497 (13%)

Query: 36  MNVYDSLRMEDMFFSQGY-ERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSR 94
           MN  D   +  +    GY + V   +++D+I++NTC IR+ A  K++  L   +++K++ 
Sbjct: 1   MNFNDLEVVLAIMKKAGYGDIVQLPEESDVILINTCAIRDNAENKIWQRLNYFKHIKSNW 60

Query: 95  IKEG-----GDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149
            K G         V V GC+A+   E+++    +V+VV GP  Y  LP LL     G++ 
Sbjct: 61  RKNGTKSSRPPPKVAVLGCMAERLKEKLIEADKMVDVVCGPDAYRDLPRLLSSVEQGQQA 120

Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209
           ++T  S+E+ +  +S V      K  VTAF++I  GC+  C+FC+VP+TRG E SR L  
Sbjct: 121 INTLLSLEETYADVSPVRIA---KDSVTAFVSIMRGCNNMCSFCIVPFTRGRERSRPLES 177

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKG-----LDGEKCT------------------ 246
           +V E  +L + GV E+TLLGQNVN++          +GE+ T                  
Sbjct: 178 IVREVGELWEQGVKEVTLLGQNVNSYCDLSNTPGIREGEEDTPDEEQRREEEKKKTKKSE 237

Query: 247 ----------------------FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL 284
                                 F+ LL  L+E    +R R+T+ HP+D  D L+    + 
Sbjct: 238 AVSDVLSSGFSAIYRTNESGLRFASLLKCLAETYPEMRFRFTSPHPKDFPDDLLLVMREQ 297

Query: 285 DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETD 344
             +   +HLPVQSGS R+L+ M R +T   Y ++++RIR + P +A+SSDFI GF GET+
Sbjct: 298 HNVCNSIHLPVQSGSSRVLERMRRGYTREAYLELVERIREIIPGVALSSDFIAGFCGETE 357

Query: 345 DDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML-EQVDENVKAERLLCLQKKLREQQV 403
           +D   T+ +V+ +GY  A+ F YS R  TP      + V E VK  RL  L    +    
Sbjct: 358 EDHLQTLSIVETVGYEMAYMFAYSMREKTPAHRHDVDDVPEEVKQRRLSELIATFKRSSA 417

Query: 404 SFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNSKNH-----------NIGDII 451
           +   + +G+   VLIE   K    +  GR    Q V  +                 GD +
Sbjct: 418 ARYHSQLGKTQLVLIEAPNKRNPNEWGGRCDSGQKVFFSRAPVPDHQSGDLVDTKPGDYV 477

Query: 452 KVRITDVKISTLYGELV 468
            V+I D   ++L GE +
Sbjct: 478 AVKILDTTFASLRGEPL 494


>gi|171914402|ref|ZP_02929872.1| MiaB-like tRNA modifying enzyme YliG [Verrucomicrobium spinosum DSM
           4136]
          Length = 478

 Score =  381 bits (980), Expect = e-103,   Method: Composition-based stats.
 Identities = 122/455 (26%), Positives = 216/455 (47%), Gaps = 17/455 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +  + S GC  N+ DS  M       G       ++AD++++NTC   + A ++  + + 
Sbjct: 3   KVGLVSLGCAKNLIDSEIMIGHLQQAGMAMTPQAEEADVLIINTCSFIDMAKKESIASVH 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
              + +    K      ++VAGC+AQ   +E+    P V+  +G     ++  ++E    
Sbjct: 63  EAVDGRAEGGKVRAKQKIIVAGCMAQRFAQELPNLMPEVDAFIGLDQLTKVAPIIEGLMG 122

Query: 146 GKRVVD--TDYSVEDKFERLSIVDGGYNR-KRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            KR  D   +  V +K + +   D    R     TA++ I EGC+  C+FC++P  RG  
Sbjct: 123 KKREEDEAPENHVTEKPQYIPDYDTPRFRLTPKHTAYIKIAEGCNHPCSFCIIPKIRGKH 182

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC------------TFSDL 250
            SR+   VV EA+ LI +GV EI L+ Q+   +     +G++             + + L
Sbjct: 183 RSRTQESVVFEAKALIKSGVKEINLISQDTTYFGMDKWEGQRPNPRSGVDSSRGESLATL 242

Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
           +  L+ ++G   +R   +HP   SD LI+A  + + ++ Y+ +P+Q  SD +L  M R  
Sbjct: 243 IRELNALEGDFWIRLLYTHPAHWSDELIQAVAECEKVVKYVDIPLQHISDNMLTLMKRET 302

Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370
                R++I R+R+  P IAI + FIVGFPGET+ DF   +  +++  + +A  F YS  
Sbjct: 303 NGAYIRELIQRMRAGIPGIAIRTTFIVGFPGETEADFEELVQFIEETKFERAGVFNYSRE 362

Query: 371 LGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG 430
            GT    M   +  + +  R     + L+ +   FN + +G+   VL+E  G+ +  +  
Sbjct: 363 EGTRADKMEGHLHHSTRKRRWNEAMRVLQHRAEEFNASQLGKTYRVLVENPGEGRSYM-- 420

Query: 431 RSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYG 465
            S  +  VV       +G+  +V I+D +   L  
Sbjct: 421 DSIDIDGVVFVDPALPVGEFAEVTISDWRGYDLVA 455


>gi|153831444|ref|ZP_01984111.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Vibrio cholerae 623-39]
 gi|148873074|gb|EDL71209.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Vibrio cholerae 623-39]
          Length = 375

 Score =  381 bits (979), Expect = e-103,   Method: Composition-based stats.
 Identities = 175/378 (46%), Positives = 247/378 (65%), Gaps = 11/378 (2%)

Query: 36  MNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSR 94
           MN YDS +M D+   + GYE     ++AD+++LNTC IREKA EKV+  LGR + LK+ +
Sbjct: 1   MNEYDSSKMADLLNAANGYELTEIPEEADVLLLNTCSIREKAQEKVFHQLGRWKTLKDKK 60

Query: 95  IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK-RVVDTD 153
                 +   V    A  EG+ I  R+P V+V+ GPQT +RLPE++++++     V+D  
Sbjct: 61  PGVVIGVGGCV----ATQEGDSIRDRAPYVDVIFGPQTLHRLPEMIKQSQTSDAPVMDIS 116

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           +   +KF+RL        R  G TAF++I EGC K+CT+CVVPYTRG E+SR +  V+ E
Sbjct: 117 FPEIEKFDRLP-----EPRAEGPTAFVSIMEGCSKYCTYCVVPYTRGEEVSRPMDDVLFE 171

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
             +L + GV E+ LLGQNVNA+RG   DG  C+F++LL  ++ I G+ R+R+TTSHP + 
Sbjct: 172 IAQLAEQGVREVNLLGQNVNAYRGATHDGGICSFAELLRLVATIDGIDRIRFTTSHPLEF 231

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
           +D +I  + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II ++R  RPDI ISS
Sbjct: 232 TDDIIAVYEDTPELVSFLHLPVQSGSDRILTMMKRPHTAIEYKSIIRKLRKARPDIQISS 291

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLC 393
           DFIVGFPGETD DF+ TM L+  + +  +FSF +SPR GTP ++    + E VK ERL  
Sbjct: 292 DFIVGFPGETDKDFQDTMKLIRDVDFDMSFSFIFSPRPGTPAADYPCDLSEEVKKERLYE 351

Query: 394 LQKKLREQQVSFNDACVG 411
           LQ+++  Q + ++   +G
Sbjct: 352 LQQQINSQAMRYSRLMLG 369


>gi|237807752|ref|YP_002892192.1| 30S ribosomal protein S12 methylthiotransferase [Tolumonas auensis
           DSM 9187]
 gi|237500013|gb|ACQ92606.1| MiaB-like tRNA modifying enzyme YliG [Tolumonas auensis DSM 9187]
          Length = 442

 Score =  381 bits (979), Expect = e-103,   Method: Composition-based stats.
 Identities = 127/464 (27%), Positives = 219/464 (47%), Gaps = 36/464 (7%)

Query: 18  VDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA 77
           ++Q     +    S GC  N+ D+ R+     ++GY+ VN+ D+A+L+++NTC   + A 
Sbjct: 1   MNQKAQAPKVGFVSLGCPKNLVDAERILTQLRTEGYDVVNNYDNAELVIVNTCGFIDSAV 60

Query: 78  EKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLP 137
           ++    +G                 V+V GC+  A+ ++I    P V  + GP  Y ++ 
Sbjct: 61  QESLEAIGEALQENGK---------VIVTGCLG-AKEDQIREVHPKVLEISGPHAYEQVL 110

Query: 138 ELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197
             + +              E       + + G        A+L I EGC+  CTFC++P 
Sbjct: 111 SHVHKYAP---------KPEHNPFLSLVPEQGVKLTPKHYAYLKISEGCNHRCTFCIIPS 161

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE---------KCTFS 248
            RG   SR++ +V+ EA++L + GV EI ++ Q+ +A  G  +            K +  
Sbjct: 162 MRGDLDSRAIGEVLGEAKRLKNAGVKEILVISQDTSA-YGADVKHRTGFYEGSPVKTSMI 220

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
            L   L+++   VRL Y   +P       + A G    ++PYL +P+Q  S RILK M R
Sbjct: 221 ALCEELAKMGMWVRLHYVYPYPHVDDVIPLMAEG---KILPYLDIPLQHASPRILKLMKR 277

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
                   + I   R + PD+ + S FIVGFPGET++DF+  +D ++K    +   FKYS
Sbjct: 278 PGAIERTLERIQEWRRICPDLTLRSTFIVGFPGETEEDFQMLLDFLEKAELDRVGCFKYS 337

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--G 426
           P  G   + + + V E VK ER     +  ++       A +G+ ++V++++  +E   G
Sbjct: 338 PVDGAKANELPDPVPEEVKEERFHRFMELQQKISARRLAAKIGRELDVIVDEVDEEGAIG 397

Query: 427 KLVGRSPWLQSVVLNSKN--HNIGDIIKVRITDVKISTLYGELV 468
           +    +P +  VV  +       GDI+KV+I +     L+G +V
Sbjct: 398 RSFADAPEIDGVVYLNGETTLKPGDIVKVKIENSDEYDLWGTVV 441


>gi|333009569|gb|EGK29021.1| RNA modification enzyme, MiaB family protein [Shigella flexneri
           K-272]
 gi|333020497|gb|EGK39760.1| RNA modification enzyme, MiaB family protein [Shigella flexneri
           K-227]
          Length = 441

 Score =  381 bits (979), Expect = e-103,   Method: Composition-based stats.
 Identities = 135/462 (29%), Positives = 224/462 (48%), Gaps = 35/462 (7%)

Query: 20  QCIVPQ-RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAE 78
           + + PQ +    S GC  N+ DS R+     ++GY+ V S DDAD++++NTC   + A +
Sbjct: 2   RKVTPQPKIGFVSLGCPKNLVDSERILTELRTEGYDVVPSYDDADMVIVNTCGFIDSAVQ 61

Query: 79  KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPE 138
           +    +G              +  V+V GC+  A+ ++I    P V  + GP +Y ++ E
Sbjct: 62  ESLEAIGEA---------LNENGKVIVTGCLG-AKEDQIREVHPKVLEITGPHSYEQVLE 111

Query: 139 LLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
            +                 + F  L + + G        A+L I EGC+  CTFC++P  
Sbjct: 112 HVHHY--------VPKPKHNPFLSL-VPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSM 162

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA------WRGKGLDGE--KCTFSDL 250
           RG  +SR + +V+ EA++L+D GV EI ++ Q+ +A       R    +GE  K +   L
Sbjct: 163 RGDLVSRPIGEVLSEAKRLVDAGVKEILVISQDTSAYGVDVKHRTGFHNGEPVKTSMVSL 222

Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
              LS++    RL Y   +P       + A G    ++PYL +P+Q  S RILK M R  
Sbjct: 223 CEQLSKLGIWTRLHYVYPYPHVDDVIPLMAEG---KILPYLDIPLQHASPRILKLMKRPG 279

Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370
           +       I + R + P++ + S FIVGFPGET++DF+  +D + +    +   FKYSP 
Sbjct: 280 SVDRQLARIKQWREICPELTLRSTFIVGFPGETEEDFQMLLDFLKEARLDRVGCFKYSPV 339

Query: 371 LGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKL 428
            G   + + +QV E VK ER     +  ++         V + I V+I++  +E   G+ 
Sbjct: 340 EGADANALPDQVPEEVKEERWNRFMQLQQQISAERLQEKVDREILVIIDEVDEEGAIGRS 399

Query: 429 VGRSPWLQS-VVLNSK-NHNIGDIIKVRITDVKISTLYGELV 468
           +  +P +   V LN + N   GDI++V++       L+G  V
Sbjct: 400 MADAPEIDGAVYLNGETNVKPGDILRVKVEHADEYDLWGSRV 441


>gi|289578370|ref|YP_003476997.1| MiaB-like tRNA modifying enzyme YliG [Thermoanaerobacter italicus
           Ab9]
 gi|297544647|ref|YP_003676949.1| MiaB-like tRNA modifying protein YliG [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
 gi|289528083|gb|ADD02435.1| MiaB-like tRNA modifying enzyme YliG [Thermoanaerobacter italicus
           Ab9]
 gi|296842422|gb|ADH60938.1| MiaB-like tRNA modifying enzyme YliG [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
          Length = 436

 Score =  381 bits (979), Expect = e-103,   Method: Composition-based stats.
 Identities = 125/448 (27%), Positives = 221/448 (49%), Gaps = 20/448 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +   + S GC  N  DS +M  +   +GY  VN  ++AD++++NTC   E A  +   ++
Sbjct: 2   KNVGIISLGCPKNTVDSEKMIAILKEKGYNIVNDENEADILIINTCSFIEDAKRESIEYI 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             +      ++K+     ++  GC+++   +E+L+  P ++ V+G   + ++ E++E   
Sbjct: 62  IEM-----GKLKKHKLKYLIATGCLSERYNKELLKELPELDAVIGTGDFPKIAEVIEEIE 116

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            GK V++  ++     E +  +           A+L I EGC   C+FC +P  RG   S
Sbjct: 117 KGKTVLEYGHANLLNDEGIQRI----LTTPNYYAYLKIAEGCSNVCSFCAIPRIRGRYRS 172

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R +  ++ EA +L+  G  E+ L+ Q+     G  +  +K     LL  LS I  L  +R
Sbjct: 173 RKMEDILKEAEELVKKGAKELILIAQDTT-KYGIDIY-KKFMLPQLLKELSLIPNLKWIR 230

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
              ++P  ++D LI+       ++ Y+ +P+Q  +D +LK M R  T  +  ++I+++R+
Sbjct: 231 LLYAYPDSVTDELIEEIKANKKVVKYIDIPLQHSNDEVLKRMKRHTTRQKIEEVINKLRT 290

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             P++ I + F+VGFPGET+++F      V +  + +   F YS   GT    M  Q+ +
Sbjct: 291 -IPNMVIRTTFMVGFPGETEEEFEDLKHFVKEKRFERVGVFAYSREEGTKSYYMKPQIKK 349

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVL 440
           +VK  R   L +  +E     N + VG+ +EVLIE    E G   GRS    P +  VV 
Sbjct: 350 SVKLRRQQELMEIQKEISYQHNLSKVGKQLEVLIEGF--EDGIYYGRSYMDAPEIDGVVY 407

Query: 441 NSKNHNI--GDIIKVRITDVKISTLYGE 466
              +  +  G+ + V ITD     L GE
Sbjct: 408 VKSDKKLTAGEFVVVTITDAYEYDLVGE 435


>gi|261345828|ref|ZP_05973472.1| RNA modification enzyme, MiaB-family [Providencia rustigianii DSM
           4541]
 gi|282566317|gb|EFB71852.1| RNA modification enzyme, MiaB-family [Providencia rustigianii DSM
           4541]
          Length = 446

 Score =  381 bits (979), Expect = e-103,   Method: Composition-based stats.
 Identities = 136/462 (29%), Positives = 221/462 (47%), Gaps = 35/462 (7%)

Query: 19  DQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAE 78
           +   VP+  FV S GC  N+ DS R+     + GY+ V S DDADL+++NTC   + A +
Sbjct: 4   NTNSVPKIGFV-SLGCPKNLVDSERILTELRTDGYQVVPSYDDADLVIVNTCGFIDSAVQ 62

Query: 79  KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPE 138
           +    +G              +  V+V GC+  A+  +I    P V  + GP +Y ++  
Sbjct: 63  ESLEAIGEA---------LNENGKVIVTGCLG-AKENQIREVHPKVLEITGPHSYEQVLN 112

Query: 139 LLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
            +                 D F  L + + G        A+L I EGC+  CTFC++P  
Sbjct: 113 HVHHY--------VPKPEHDPFLSL-VPEQGVKLTPKHYAYLKISEGCNHRCTFCIIPSM 163

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA------WRGKGLDGE--KCTFSDL 250
           RG   SR +  V++EA++L+++GV E+ ++ Q+ +A       R    +G+  K +   L
Sbjct: 164 RGDLDSRPIGDVLNEAKRLVESGVKELLVISQDTSAYGVDVKHRTGFWEGKPVKTSMVGL 223

Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
              L+ +   VRL Y   +P       + A G    ++PYL +P+Q  S +ILK M R  
Sbjct: 224 CEQLASMGVWVRLHYVYPYPHVDEVIPLMAEG---KVLPYLDIPLQHASPKILKLMKRPG 280

Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370
                 + I R R + P++ + S FIVGFPGET++DF+  +D + +    +   FKYSP 
Sbjct: 281 AVERTLERIKRWREICPELTLRSTFIVGFPGETEEDFQMLLDFLQEARLDRVGCFKYSPV 340

Query: 371 LGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKL 428
            G   + + +QV E +K ER     +  +E         VG+ + V+I++   E   G+ 
Sbjct: 341 EGAKANELADQVSEEIKEERYHRFMQLQQEISTQRLQEKVGRKLWVIIDEVDDEGAVGRS 400

Query: 429 VGRSPWLQS-VVLNSK-NHNIGDIIKVRITDVKISTLYGELV 468
           +  +P +   V LN + +   GDI+ V I       L+G LV
Sbjct: 401 MADAPEIDGMVYLNGEFDVKAGDIVNVLIEHADEYDLWGSLV 442


>gi|332019786|gb|EGI60247.1| CDK5RAP1-like protein [Acromyrmex echinatior]
          Length = 544

 Score =  381 bits (979), Expect = e-103,   Method: Composition-based stats.
 Identities = 160/502 (31%), Positives = 258/502 (51%), Gaps = 52/502 (10%)

Query: 10  VAHMVSQIVDQCIVP---------QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD 60
           ++  V  I  +  VP         Q+ + + +GCQMNV D+  +  +  S GY+    +D
Sbjct: 34  LSPSVIDIPSEKPVPYVQNIRGENQKVYFEIFGCQMNVNDADIVWSILKSHGYKHTECLD 93

Query: 61  DADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRR 120
           DAD+++L TC IR+ A +KV+  L  +  ++N + +     L +  GC+A+    +IL R
Sbjct: 94  DADIVLLVTCSIRDNAEQKVWHKLENLNGVRNKKKRT--TKLPMKIGCMAERLKTKILDR 151

Query: 121 SPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFL 180
             +V+V+ GP +Y  LP LL      +  ++   S ++ +  ++ V    +      A++
Sbjct: 152 GKLVDVIAGPDSYKDLPRLL-AVTDDETAINVLLSFDETYADVTPVRLNQDSTE---AYV 207

Query: 181 TIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG--- 237
           +I  GCD  CT+C+VP+TRG E SR ++ ++DE R+L D GV EITLLGQNVN++R    
Sbjct: 208 SIMRGCDNMCTYCIVPFTRGRERSRPIASILDEVRQLSDQGVKEITLLGQNVNSYRDLSK 267

Query: 238 -----------------KGLDGEKC---TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCL 277
                            K +   K     FSDLL  +S I   +R+R+T+ HP+D  D +
Sbjct: 268 SEFILSPNMETQLAKGFKTVYKNKKGGLRFSDLLDKVSLINPEIRIRFTSPHPKDFPDEV 327

Query: 278 IKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIV 337
           +    +   +   +HLP QSG+  IL+ M R +T   Y  ++  IR++ PD+ ISSDFI 
Sbjct: 328 LHLIAERPNICKQIHLPAQSGNSVILERMRRGYTREAYLDLVYHIRNILPDVYISSDFIA 387

Query: 338 GFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQK 396
           GF  ET++ F+ T+ L++++ Y  AF F YS R  T       + V+ + K ER+  +  
Sbjct: 388 GFCSETEEQFQDTLSLIEEVKYNNAFLFAYSMREKTTAHRRYKDDVETHTKTERMNRMIA 447

Query: 397 KLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLVGRSPWLQSVVLNSKNHNI-------- 447
             R++    N A +GQ   VL+E+  K    +L GR+     V+L S    I        
Sbjct: 448 LYRKEVEKLNKAQIGQHQLVLVERTSKRSDQQLQGRNDGNVRVILPSTAIPIAQHSTTTR 507

Query: 448 ----GDIIKVRITDVKISTLYG 465
               GD + V+I +    +L G
Sbjct: 508 EIQAGDYVVVQIDNANSHSLQG 529


>gi|237738331|ref|ZP_04568812.1| radical SAM domain-containing protein [Fusobacterium mortiferum
           ATCC 9817]
 gi|229420211|gb|EEO35258.1| radical SAM domain-containing protein [Fusobacterium mortiferum
           ATCC 9817]
          Length = 445

 Score =  381 bits (979), Expect = e-103,   Method: Composition-based stats.
 Identities = 135/450 (30%), Positives = 220/450 (48%), Gaps = 17/450 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQ-GYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +  + S GC  N+ DS     +   +   E  + + +AD++++NTC     A E+    +
Sbjct: 2   KLALISLGCSKNLVDSEHYLGILSKRKEMELTSELSEADIVIVNTCGFIGDAKEESIETI 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             +   K      G    ++VAGC+AQ   EEIL+  P V+ V+G     ++ ++++   
Sbjct: 62  LEVSEFKE----TGNLKKLIVAGCLAQKYSEEILKELPEVDAVIGTGDIDKIEKVVDEIL 117

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
             K+VV+T             V          TA+L I EGC++ CT+C++P  RG   S
Sbjct: 118 ENKKVVETKNMTFLANANTERV----LTTASHTAYLKISEGCNRACTYCIIPQMRGRLRS 173

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           RS+  +V+EA++L+ +GV EI LL Q      G  L G+K   + L+  L +I+GL  LR
Sbjct: 174 RSIEDIVEEAKRLVASGVREINLLAQETTE-YGIDLYGDKK-LAALMKELCKIEGLKWLR 231

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
               HP  ++D LI+     + +  Y  +P+Q  SD IL++M R  +  + + +++RIR 
Sbjct: 232 TYYMHPEYVTDELIEVMKSEEKICKYFDVPIQHVSDNILRNMARAKSGEQVKDVLNRIRK 291

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             P+  I +  IVGFPGET+++F+  MD V +  +  A  FKYS    T   N+  QV E
Sbjct: 292 AIPEATIRTTLIVGFPGETEENFQELMDYVREFEFDYAGVFKYSREEDTVAYNLPNQVPE 351

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GRSP----WLQS-V 438
            +K +R   L     E     N   +G+ IEV+I+    E   L+ GR+      +   V
Sbjct: 352 EIKEKRYAELVNLQSEIAERKNRRLLGEEIEVMIDGVSSESEYLLEGRTRGQALEIDGKV 411

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           +        G+I+KV+          G +V
Sbjct: 412 LTTDGTAKPGEIVKVKFEQNFEYDFVGPIV 441


>gi|332799055|ref|YP_004460554.1| MiaB-like tRNA modifying enzyme [Tepidanaerobacter sp. Re1]
 gi|332696790|gb|AEE91247.1| MiaB-like tRNA modifying enzyme [Tepidanaerobacter sp. Re1]
          Length = 435

 Score =  381 bits (979), Expect = e-103,   Method: Composition-based stats.
 Identities = 138/445 (31%), Positives = 241/445 (54%), Gaps = 13/445 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           +P+  F  + GC++N Y+S  + ++F ++GYE V+    AD+ V+NTC++  ++A K   
Sbjct: 1   MPKVAFF-TLGCKVNQYESAAIAELFENKGYEIVDFDTKADVYVINTCNVTNESARKSRQ 59

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            + +        I+      V V GC  Q    E+L     V+V VG +  +R+ +L+E+
Sbjct: 60  IIRKA-------IRNNPSAKVAVVGCYVQMALHEVLN-IKGVSVAVGTKDRHRIVDLVEK 111

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           A    + + T  ++  +     I   G+ +K    AFL IQ+GC+ FC++C++PY RG  
Sbjct: 112 AEQCSKPIVTVGNIMKQQTFEEIALKGHRQK--TRAFLKIQDGCNMFCSYCIIPYARGPV 169

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SRS+  ++DEA+ L  +G  EI L G ++    G+    E     D++  +++I+G+ R
Sbjct: 170 RSRSIDNIIDEAQSLAKDGFKEIVLTGIHLG-LYGRDFKDENIHLLDVISRIADIEGIER 228

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R ++    +++D  +K+   +     + H+P+QSG D +L+ MNRR+T  E+R  ID I
Sbjct: 229 IRLSSIEAMELTDEFLKSLCGIKKFCHHFHVPLQSGCDTVLRRMNRRYTTDEFRDRIDYI 288

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R + PD +I++D IVGFPGET+++F+ T + + +I +++   F +SPR GT   +M  Q+
Sbjct: 289 RQLMPDASITTDVIVGFPGETEEEFKQTENFIKEINFSRLHVFPFSPRKGTLADDMPNQI 348

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
           +++VK ER   L     + +  F    V  I +VL E   K+     G +     V + S
Sbjct: 349 EKSVKVERSHRLISLSEKLEKDFCKRFVNSIQKVLFEDK-KDDNFYEGLTENYIKVGVKS 407

Query: 443 KNHNIGDIIKVRITDVKISTLYGEL 467
           K      II VR+       ++GE+
Sbjct: 408 KQDLHNKIIHVRLKKNFNDYVFGEV 432


>gi|88857374|ref|ZP_01132017.1| hypothetical protein PTD2_02401 [Pseudoalteromonas tunicata D2]
 gi|88820571|gb|EAR30383.1| hypothetical protein PTD2_02401 [Pseudoalteromonas tunicata D2]
          Length = 467

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 134/468 (28%), Positives = 219/468 (46%), Gaps = 36/468 (7%)

Query: 13  MVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHI 72
           + SQ         +    S GC  N+ DS R+     ++GYE V+S  D+D++++NTC  
Sbjct: 21  LASQAPTAKGTGSKVGFVSLGCPKNLVDSERILTQLRTEGYEVVSSYHDSDVVIVNTCGF 80

Query: 73  REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT 132
            + A ++    +G    LK +         V+V GC+   E +EI    P V  + GP  
Sbjct: 81  IDSAVQESLDTIGEA--LKENGK-------VIVTGCLGARE-DEIREVHPNVLGITGPHA 130

Query: 133 YYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTF 192
           Y  + E +      K V++   S+        I D G        A+L I EGC+  CTF
Sbjct: 131 YENVMEHVHE-FAPKPVLNPFMSL--------IPDQGVKLTPKHYAYLKISEGCNHRCTF 181

Query: 193 CVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE--------- 243
           C++P  RG  +SR +  V+ EA +L   GV E+ ++ Q+ +A  G  +  +         
Sbjct: 182 CIIPSMRGDLVSRPIGDVLQEAERLKQAGVKELLVISQDTSA-YGVDVKSKTGFWNGMPV 240

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
           K    +L  +L+++   VRL Y   +P       + A G    L+PYL +P Q  S RIL
Sbjct: 241 KTDMLNLCQALNKLGIWVRLHYVYPYPHVDDIIPLMAEG---KLLPYLDIPFQHASPRIL 297

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           K M R   A      I + R + P++ I S FIVGFPGET++DF+  +D +++    +  
Sbjct: 298 KMMKRPGQAERTLDRIKKWRQLCPELVIRSTFIVGFPGETEEDFQILLDWLEEAQLDRVG 357

Query: 364 SFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK 423
            FKYSP  G   + + E V E +  +R      K +    +     +GQ++EVL+++  +
Sbjct: 358 CFKYSPIEGAKANELAEPVPEEIMQDRFERFMLKQQAISKNRLALRIGQVMEVLVDEVDE 417

Query: 424 EK--GKLVGRSPWLQSVVL--NSKNHNIGDIIKVRITDVKISTLYGEL 467
           E   G+    +P +  V+      +   GD++KV +       L+G +
Sbjct: 418 EGAIGRTFADAPEIDGVIYLNGETDLKPGDVVKVLVEHSDEYDLWGSV 465


>gi|87125226|ref|ZP_01081072.1| hypothetical protein RS9917_07410 [Synechococcus sp. RS9917]
 gi|86166995|gb|EAQ68256.1| hypothetical protein RS9917_07410 [Synechococcus sp. RS9917]
          Length = 458

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 132/454 (29%), Positives = 220/454 (48%), Gaps = 28/454 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA-AEKVYSFL 84
                  GC+ N  D+  M  +    GY   +   DA ++V+NTC   + A  E V + +
Sbjct: 9   TVAFAHLGCEKNRVDTEHMLGLLEQAGYGVSSDEQDASVVVVNTCSFIQDAREESVRTLV 68

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           G     K           +++AGC+AQ   EE+L   P    +VG   Y  + ++L+R  
Sbjct: 69  GLAEQGKE----------LIIAGCLAQHFQEELLESLPEAKAIVGTGDYQHIVDVLQRVE 118

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRG-VTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            G+RV      V      ++      +R  G   A+L + EGCD  C FC++P+ RG + 
Sbjct: 119 AGERV----NQVSPVPTFVANEHLPRHRTSGEAVAYLKVAEGCDYRCAFCIIPHLRGNQR 174

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR +  +V EA +L   GV E+ L+ Q +    G  L G K   +DLL++L E++ +  +
Sbjct: 175 SRPIESIVAEAHQLAAQGVKELILISQ-ITTNYGLDLYG-KPRLADLLHALGEVE-IPWV 231

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R   ++P  ++  ++ A+ D+  ++PYL LP+Q     +L++MNR   A    +++D+IR
Sbjct: 232 RVHYAYPTGLTPEVLAAYRDVSNVLPYLDLPLQHSHPDVLRAMNRPWQADVNERLLDQIR 291

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              PD  + +  IVGFPGET+  F      +++  +     F +SP  GT  + +  +V+
Sbjct: 292 DQLPDAVLRTTLIVGFPGETEAHFEHLATFLERQRFDHVGVFTFSPEDGTAAATLPGRVE 351

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVV 439
             V   R   L    +    + N+A VG+ ++VLIE+H    G ++GR    +P +   V
Sbjct: 352 AEVAVARKDRLMMLQQPISAARNNAWVGRTVDVLIEQHNPSSGAMIGRCARFAPEVDGEV 411

Query: 440 LNSKNHN-----IGDIIKVRITDVKISTLYGELV 468
           L     N      G ++ V+IT   +  L G LV
Sbjct: 412 LVQPGANNLQAGPGTMVPVQITGGDVYDLSGHLV 445


>gi|291549892|emb|CBL26154.1| MiaB-like tRNA modifying enzyme [Ruminococcus torques L2-14]
          Length = 450

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 143/451 (31%), Positives = 237/451 (52%), Gaps = 30/451 (6%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++  + + GC++N Y++  M++M    GYE V   + ADL V+NTC +   A  K    L
Sbjct: 2   KKAALHNLGCKVNAYETEAMQEMLEKAGYEIVPFKEGADLYVINTCTVTNIADRKSRQML 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R R       K   D +VV AGC  QA+ +EI +    +++V+G      L E LE   
Sbjct: 62  HRAR-------KMNPDAVVVAAGCYVQAKEKEI-QVDDCIDIVLGNNKKQNLIEALEEYE 113

Query: 145 FGKRV-------------VDTDYSVEDKFERLSIVDGGYN-----RKRGVTAFLTIQEGC 186
                              + D   E K E +       N           A++ +Q+GC
Sbjct: 114 RTHNADCNVTENEKNAKNQENDRKAEIKMEEIGKTKEYENLHLTKPGDHTRAYIKVQDGC 173

Query: 187 DKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT 246
           ++FCT+C++PY RG   SRS+  V+DE R L DNG  E+ L G ++++  G   D ++  
Sbjct: 174 NQFCTYCIIPYARGRVRSRSMEDVLDEVRTLADNGYKEVVLTGIHLSS-YGIDFD-KEYH 231

Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306
             +L+ ++ EI G+ R+R  +  P  +++   +    L  + P+ HL +QSG D  LK M
Sbjct: 232 LLELIRAVHEIDGIERIRLGSLEPGIITEEFAEGIAKLPKMCPHFHLSLQSGCDATLKRM 291

Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
           NRR+T+ EY +  + +R   P+ A+++D IVGFPGET+++F+ + D VD I + +   FK
Sbjct: 292 NRRYTSSEYAEKCELLRKYFPNPALTTDVIVGFPGETEEEFKESYDFVDSIDFYETHIFK 351

Query: 367 YSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG 426
           YS R GT  + M +QVDE +KA+R   L +   +++ ++  +  G+ +EVL+E++ +  G
Sbjct: 352 YSRREGTKAAVMPDQVDEQIKAKRSAQLIELGEKKRAAYEQSFQGKEVEVLVEENLELNG 411

Query: 427 KLV--GRSPWLQSVVLNSKNHNIGDIIKVRI 455
           K V  G +     + L +  +    I+KV+I
Sbjct: 412 KEVQTGHTKEYMKIALETNENLKNSIVKVQI 442


>gi|325681387|ref|ZP_08160913.1| ribosomal protein S12 methylthiotransferase RimO [Ruminococcus
           albus 8]
 gi|324106877|gb|EGC01167.1| ribosomal protein S12 methylthiotransferase RimO [Ruminococcus
           albus 8]
          Length = 443

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 128/452 (28%), Positives = 212/452 (46%), Gaps = 16/452 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           +  R  + S GC  N  D+  M      +GY+ V     AD++V+NTC   E A ++   
Sbjct: 1   MSTRVGMVSLGCPKNQVDAEHMLFDLKKEGYQIVADAALADVVVVNTCGFIESAKQEAID 60

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +     LK      G    V+  GC+A+   +E+ +  P ++ VVG  +  +LPE++  
Sbjct: 61  TILEFCTLKQE----GRIKAVIATGCLAERYRDEMKKEIPELDAVVGLGSNSKLPEIIRD 116

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
              G+  +    S  D    L +  G         A++ I EGC   CT+C +P  RG  
Sbjct: 117 IYRGEEQICAYGSKTD----LPMEGGRIISTEPFYAYIKIAEGCSNNCTYCAIPAIRGKF 172

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR +  +++EAR L +NGV E+ ++ Q+     G+ + G K    +LL  L +I G   
Sbjct: 173 RSRKMEDILEEARWLAENGVTELVVIAQDTT-RYGEDIYG-KSKLPELLRELCKIDGFKW 230

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R   S+P  +S+  I      + L+ Y+ +P+Q  +  +L+SMNR        ++I ++
Sbjct: 231 IRTLYSYPERISEEFIDVLASEEKLVKYIDMPIQHCNGDVLRSMNRPGNEAFLLELISKL 290

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+  PDI + +  I GFPGET+  F    + V  +G+ +   F YSP  GT   +M  QV
Sbjct: 291 RARIPDIVLRTTLIAGFPGETEAQFEELCEFVKNVGFERLGCFAYSPEEGTKAFSMEGQV 350

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSV 438
           DE  K  R   + ++       +N A +G+ IEV+ E   +      GR    +P +   
Sbjct: 351 DEQTKERRADIIMREQMLVADRYNQAQLGKTIEVVCEGFDRYAECYFGRGTADAPEIDGK 410

Query: 439 VL--NSKNHNIGDIIKVRITDVKISTLYGELV 468
           +   + K   +G  +KV + D     L G +V
Sbjct: 411 IFFTSEKKVQVGQYVKVELFDTMDYDLLGTVV 442


>gi|328953239|ref|YP_004370573.1| Ribosomal protein S12 methylthiotransferase rimO [Desulfobacca
           acetoxidans DSM 11109]
 gi|328453563|gb|AEB09392.1| Ribosomal protein S12 methylthiotransferase rimO [Desulfobacca
           acetoxidans DSM 11109]
          Length = 473

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 129/450 (28%), Positives = 208/450 (46%), Gaps = 17/450 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +R +  S GC  N  D+  M  +  + GY+ V+   +ADL+++NTC     A ++    +
Sbjct: 13  RRLYPVSLGCAKNRVDTEIMLALLEAAGYQVVSRPQEADLMLVNTCGFITPACQEAIDTI 72

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             +   K     +  +  +VV GC+ Q   +E+L   P V++ +G   + R+ E++    
Sbjct: 73  LELAAYKQ----DQPEKQLVVTGCLVQRYQQELLDLLPEVDIFLGVNDFPRIVEVIRA-- 126

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
              R        +D ++   ++   +      +A+L I EGC   CT+C +P  RG   S
Sbjct: 127 ---RSTTGRLHCQDGWQDYELIWPRHLTTPFYSAYLKIAEGCSHHCTYCTIPQIRGPYRS 183

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R LS +V EA++L   GV E+ L+ Q+  A  G    G +    +LL  L+ I  L  +R
Sbjct: 184 RPLSTLVAEAKQLAAQGVRELNLVAQDTTA-YGVD-QGGRLLLPELLRQLAGIAALQWIR 241

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
               HP  ++  L++   D   + PY  LPVQ  SDR+L  M R +   +  + + RIR+
Sbjct: 242 LLYGHPARVTPELLRVMADHPQICPYFDLPVQHVSDRLLHRMGRGYRQKDLWETLARIRT 301

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           + P   + +  IVGFPGE + DF     +  ++ +     F Y P  GTP + M E V  
Sbjct: 302 IIPAATLRTSVIVGFPGEREQDFAELCQVTAQMEFDHLGVFAYQPEEGTPAAKMAESVTP 361

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-----KGKLVGRSPWLQS-V 438
                R   L+               G I  VLIE H +E     +G+L G++P     V
Sbjct: 362 REANRRARRLRSLQARLNRKKLRRLKGTIQPVLIEGHSEETELLLRGRLAGQAPEADGQV 421

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            +N+    +G +  VRIT      L GE+V
Sbjct: 422 YINAGWAELGRLTPVRITKTYTYDLLGEVV 451


>gi|257451722|ref|ZP_05617021.1| hypothetical protein F3_01564 [Fusobacterium sp. 3_1_5R]
 gi|317058281|ref|ZP_07922766.1| radical SAM-superfamily protein [Fusobacterium sp. 3_1_5R]
 gi|313683957|gb|EFS20792.1| radical SAM-superfamily protein [Fusobacterium sp. 3_1_5R]
          Length = 444

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 126/450 (28%), Positives = 221/450 (49%), Gaps = 20/450 (4%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQ-GYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           F + S GC  N+ DS  +  +  ++ G++  N +++ADL+++NTC     A ++    + 
Sbjct: 3   FALISLGCSKNLVDSENLTGILVNRKGFQLTNEIEEADLVLINTCGFIGDAKKESIETIL 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +   K  R+K      +VV GC+AQ   EE+L+  P ++ V+G     ++  +++    
Sbjct: 63  EVAEYKQERLK-----KIVVCGCLAQRYAEELLQEIPEIDAVIGTGEIDKIESVVDEILQ 117

Query: 146 GKRVVDTDYSVEDKFERLSIVD-GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            K+ V+T       F  L   D          TA+L I EGC++ CT+C++P  RG   S
Sbjct: 118 DKKAVETS-----SFHFLPNADTDRVLTTPPHTAYLKISEGCNRRCTYCIIPQLRGDLRS 172

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R+   +++EA++L+  GV E+ LL Q      G    G+K    DLL  L +I+GL  +R
Sbjct: 173 RTKEDILEEAKRLVSGGVRELNLLAQETTE-YGIDNYGKKA-LPDLLRELVKIEGLDWIR 230

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
                PR ++D LI+     + +  Y  +P+Q  S  +L+ M R  T  + ++++ +IR 
Sbjct: 231 TYYMFPRSITDELIEVMKQEEKICKYFDIPIQHISSNMLRRMGRAITGEQTKELLYKIRK 290

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             P+    +  IVGFPGET+++F+   D V++  +     F+YS    T    M  Q+ E
Sbjct: 291 EIPEAVFRTSLIVGFPGETEEEFQELKDFVEEFQFDYIGVFQYSREEDTVAYTMENQIPE 350

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GR----SPWLQSVV 439
            VK  R   +     E   S N   +G+ +EVLI+    E   ++ GR    +  +   V
Sbjct: 351 EVKERRQAEIINLQNEIAESKNRKLLGREVEVLIDGISSESEYMLEGRLKTQALDIDGKV 410

Query: 440 LNSKN-HNIGDIIKVRITDVKISTLYGELV 468
           L S+    +G+++++ +         G +V
Sbjct: 411 LTSEGTAQVGEMVRIMLEQNFEYDFIGRIV 440


>gi|213962370|ref|ZP_03390633.1| conserved hypothetical protein [Capnocytophaga sputigena Capno]
 gi|213955036|gb|EEB66355.1| conserved hypothetical protein [Capnocytophaga sputigena Capno]
          Length = 436

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 133/460 (28%), Positives = 220/460 (47%), Gaps = 33/460 (7%)

Query: 17  IVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA 76
           +  + I      V + GC  NVYDS  +     + G E V+  +  +++V+NTC     A
Sbjct: 1   MRTRSIKKNTINVVTLGCSKNVYDSEVLMGQLKAGGKEVVHEKEG-NIVVINTCGFINNA 59

Query: 77  AEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL 136
            E+  + +      K +    G    V V GC+++    ++ +  P V+   G       
Sbjct: 60  KEESINTILDYVQQKEA----GLVDKVFVMGCLSERYKPDLEKEIPDVDQYFGTSEL--- 112

Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
           P LL       +V+  DY  E   ERL+     Y       A+L I EGCD+ C+FC +P
Sbjct: 113 PALL-------KVLGADYKHELIGERLTTTPKNY-------AYLKISEGCDRPCSFCAIP 158

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256
             RG  IS S+  +V EA KL   GV E+ L+ Q++  + G  L  +K   +DLL +L +
Sbjct: 159 LMRGAHISTSIKDLVTEAEKLAAKGVKELILIAQDIT-YYGLDLY-KKRALADLLRALVK 216

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           ++G+  +R   + P      +++       +  YL +P+Q  SD+IL SM R  T  +  
Sbjct: 217 VEGIEWIRIHYAFPTGFPMDVLEVMKAEPKICNYLDIPLQHISDKILTSMKRGTTQEKTT 276

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
           +++ + R   P++AI +  IVG+PGET++DF+A  + V  + + +   F YS    T   
Sbjct: 277 KLLKKFREAVPEMAIRTTLIVGYPGETEEDFQALKEFVKAMRFDRLGCFTYSHEENTTAY 336

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQ 436
            + + V E VK +R   + +   +     N A VG++   LI++  KE    VGR+ +  
Sbjct: 337 ELADDVPEEVKLQRANEIMELQSQISWELNQAKVGKVFRCLIDR--KEGNYFVGRTEYDS 394

Query: 437 S-----VVLNSKNH--NIGDIIKVRITDVKISTLYGELVV 469
                 V++++K H   IGD   V+I +     LYGE + 
Sbjct: 395 PDVDNEVLIDAKKHYVKIGDFTDVKIIEAADYDLYGEPIT 434


>gi|226326854|ref|ZP_03802372.1| hypothetical protein PROPEN_00714 [Proteus penneri ATCC 35198]
 gi|225204691|gb|EEG87045.1| hypothetical protein PROPEN_00714 [Proteus penneri ATCC 35198]
          Length = 442

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 126/464 (27%), Positives = 220/464 (47%), Gaps = 36/464 (7%)

Query: 18  VDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA 77
           + Q     +    S GC  N+ DS R+     ++GY+ V + +DADL+++NTC   + A 
Sbjct: 1   MSQTNQVPKIGFVSLGCPKNLVDSERILTELRTEGYQVVPTYNDADLVIVNTCGFIDSAV 60

Query: 78  EKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLP 137
           ++    +G   +             V+V GC+  A+  +I    P V  + GP +Y ++ 
Sbjct: 61  QESLEAIGEALDENGK---------VIVTGCLG-AKENQIREVHPKVLEITGPHSYEQVL 110

Query: 138 ELLERARFGKRVVDTDYSVEDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
             +                 D    LS+V   G        A+L I EGC+  CTFC++P
Sbjct: 111 SHIHHY----------VPKPDHNPFLSLVPEQGVKLTPRHYAYLKISEGCNHRCTFCIIP 160

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK------GLDGE--KCTFS 248
             RG   SR + +V+ EA++L++ GV E+ ++ Q+ +A+           DG   K +  
Sbjct: 161 SMRGDLDSRPIGEVLGEAKRLVNAGVKELLVISQDTSAYGVDTKHQTGFWDGMPVKTSMV 220

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
            L   L+++   VRL Y   +P       + A G    ++PYL +P+Q  S +ILK M R
Sbjct: 221 SLCEQLAKLGIWVRLHYVYPYPHVDDVIPLMAEG---KILPYLDIPLQHASPKILKLMKR 277

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
             +     + + R R + P++ + S FIVGFPGET++DF+  +D + +    +   FKYS
Sbjct: 278 PGSVERTLERVKRWREICPELTLRSTFIVGFPGETEEDFQMLLDFLTEARLDRVGCFKYS 337

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--G 426
           P  G   + + +QV E VK ER     +  ++         +G+++ V+I++  +E   G
Sbjct: 338 PVDGAKANELADQVPEEVKEERYHRFMQLQQQISTERLQEKIGKVLLVMIDEVDEEGAIG 397

Query: 427 KLVGRSPWLQSVVLNSK--NHNIGDIIKVRITDVKISTLYGELV 468
           + +  +P +   V  ++  +   G I++V I       L+G +V
Sbjct: 398 RSMADAPEIDGAVYLNEQFDVEPGQIVRVLIEHADEYDLWGTIV 441


>gi|322379427|ref|ZP_08053797.1| conserved hypothetical ATP-binding protein [Helicobacter suis HS1]
 gi|322380962|ref|ZP_08055028.1| MiaB-like protein [Helicobacter suis HS5]
 gi|321146634|gb|EFX41468.1| MiaB-like protein [Helicobacter suis HS5]
 gi|321148136|gb|EFX42666.1| conserved hypothetical ATP-binding protein [Helicobacter suis HS1]
          Length = 435

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 148/442 (33%), Positives = 242/442 (54%), Gaps = 19/442 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           Q+ ++++ GC MN  DS  +       GY  V    +ADLI++NTC +REK   K++S +
Sbjct: 4   QKVYIETMGCAMNTRDSQHLIGELSKIGYVEVKEAKEADLILINTCSVREKPERKLFSEI 63

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           G+   +K        +  + V GC A   G +IL+++P V+ V+G +   ++ ++++R +
Sbjct: 64  GQFAKIKK------PNAKIGVCGCSASHMGVQILQKAPSVDFVLGARNVSKITDIIKREK 117

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
             +  +D D S                    + A L I  GCDK CT+C+VP+TRG EIS
Sbjct: 118 AVEISLDHDDSTYVFNTHAP---------SQIKALLNISIGCDKHCTYCIVPHTRGKEIS 168

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG-LDGEKCTFSDLLYSLSEIKGLVRL 263
             +  ++ EA KL   GV EI LLGQNVN +  +  +   K  FS LL +LS+I+GL R+
Sbjct: 169 IPMDLILKEAEKLTKQGVKEILLLGQNVNNYGVRFSIKHPKVNFSALLENLSQIEGLKRI 228

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+T+ HP  M +  ++       +   +H+P+QSGS+ ILK+M R ++   Y   I R++
Sbjct: 229 RFTSPHPLHMDNAFLECFARNPKVCKSIHIPLQSGSNAILKAMKRGYSKEWYLDRITRLK 288

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           S+ P++ IS+D IVGFPGET  DF  T+++++++ +   +SF YS R  TP  ++ E+V 
Sbjct: 289 SLVPNVGISTDIIVGFPGETQQDFEQTLEVLEQVRFDTLYSFIYSARPLTPAYHL-EKVP 347

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
           EN+    L  LQ + RE         VG+I +VL+E   +      GRS   + +   + 
Sbjct: 348 ENIAHHNLERLQSRHREILEQKARDEVGKIHQVLVENITE--PLAEGRSDNGRLLSFEAL 405

Query: 444 NHNIGDIIKVRITDVKISTLYG 465
           +  +GD+++V++       L G
Sbjct: 406 SARVGDLVRVQVVAHHKGRLKG 427


>gi|268591324|ref|ZP_06125545.1| RNA modification enzyme, MiaB-family [Providencia rettgeri DSM
           1131]
 gi|291313300|gb|EFE53753.1| RNA modification enzyme, MiaB-family [Providencia rettgeri DSM
           1131]
          Length = 444

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 132/463 (28%), Positives = 223/463 (48%), Gaps = 35/463 (7%)

Query: 19  DQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAE 78
           +   VP+  FV S GC  N+ DS R+     + GY+ V S D+ADL+++NTC   + A +
Sbjct: 4   NTNPVPKIGFV-SLGCPKNLVDSERILTELRTDGYQVVPSYDNADLVIVNTCGFIDSAVQ 62

Query: 79  KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPE 138
           +    +G              +  V+V GC+  A+  +I    P V  + GP +Y ++  
Sbjct: 63  ESLEAIGEA---------LNENGKVIVTGCLG-AKENQIREVHPKVLEITGPHSYEQVLN 112

Query: 139 LLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
            +                 D F  L + + G        A+L I EGC+  CTFC++P  
Sbjct: 113 HVHHY--------VPKPEHDPFLSL-VPEQGVKLTPKHYAYLKISEGCNHRCTFCIIPSM 163

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDL 250
           RG   SR +  V++EA++L+ +GV E+ ++ Q+ +A+      +    DG+  K +   L
Sbjct: 164 RGDLDSRPIGDVLNEAKRLVASGVKELLVISQDTSAYGVDVKNKTGFWDGQPVKTSMVGL 223

Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
              L+ +   VRL Y   +P       + A G    ++PYL +P+Q  S +ILK M R  
Sbjct: 224 CEQLASMGVWVRLHYVYPYPHVDDVIPLMAEG---KILPYLDIPLQHASPKILKLMKRPG 280

Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370
                 + I R R + P++ + S FIVGFPGET++DF+  +D + +    +   FKYSP 
Sbjct: 281 AVERTLERIKRWREICPELTLRSTFIVGFPGETEEDFQMLLDFLLEAKLDRVGCFKYSPV 340

Query: 371 LGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKL 428
            G   + + +QV E +K +R     +  ++         +G+ I V+I++   E   G+ 
Sbjct: 341 EGAKANELADQVPEEIKEDRYHRFMQLQQQISTQRLQDKIGKEILVIIDEVDDEGAIGRS 400

Query: 429 VGRSPWLQS-VVLNSK-NHNIGDIIKVRITDVKISTLYGELVV 469
           +  +P +   V LN +   ++GDI+KV +       L+G +V 
Sbjct: 401 MADAPEIDGMVYLNGEFEVSVGDIVKVLVEHADEYDLWGNIVT 443


>gi|262277765|ref|ZP_06055558.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [alpha proteobacterium
           HIMB114]
 gi|262224868|gb|EEY75327.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [alpha proteobacterium
           HIMB114]
          Length = 435

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 185/444 (41%), Positives = 280/444 (63%), Gaps = 14/444 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++F++K++GCQMN YDS ++ D+  S  Y++++ +D+AD  + NTCHIREKA +KVYS  
Sbjct: 4   KKFYIKTFGCQMNEYDSNKISDLMNSIAYQKIDKIDEADCFIFNTCHIREKATQKVYSD- 62

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
                      K+    + V+AGCVAQAE   +  +S  V++VVGPQ Y++LP L++  +
Sbjct: 63  ---IGKIKKIYKDKKKPIFVLAGCVAQAESSMVFEKSDYVDIVVGPQAYHKLPYLIKSFK 119

Query: 145 FGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             + R V+T+  V+ KF+ L       N K  +++F+TIQEGCDKFC FCVVPYTRG E 
Sbjct: 120 SNRQRSVETELDVDGKFDVLK---NLKNTKSKISSFVTIQEGCDKFCKFCVVPYTRGPEF 176

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR  ++++DE   L DNG  EI LLGQNV+A++   +     + + L+  +++I  + R+
Sbjct: 177 SRDHNKILDEILSLTDNGTKEIVLLGQNVSAYKNNDI-----SLARLIKKIAKINNVKRI 231

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+TTSHP D    LI   G+   LMP LHLPVQSGSD+ILK MNR HT  +Y  +I++ R
Sbjct: 232 RFTTSHPNDFDQELISLFGEEPKLMPQLHLPVQSGSDKILKLMNRNHTRSDYLNLIEKFR 291

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
             + DI  SSDFIVGFPGET++D   T++LV ++ ++ ++SF YS R GTP +N+ E +D
Sbjct: 292 KEKSDIQFSSDFIVGFPGETNEDHLDTINLVKEVKFSLSYSFIYSQRPGTPATNLSE-LD 350

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
            N+  +RL  LQ  L +QQ+ FN + +     VL E   + + +  GR+ ++  V + + 
Sbjct: 351 NNISQKRLEELQGLLFKQQIEFNHSMINHENSVLFENKTQNEEQFFGRNQYMTPVFIKNT 410

Query: 444 NHNIGDIIKVRITDVKISTLYGEL 467
               G+I K+ I +   + L+G +
Sbjct: 411 AIKAGEIKKIFIENANRNNLFGRI 434


>gi|113461587|ref|YP_719656.1| ribosomal protein S12 methylthiotransferase [Haemophilus somnus
           129PT]
 gi|123327372|sp|Q0I4D9|RIMO_HAES1 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|112823630|gb|ABI25719.1| SSU ribosomal protein S12P methylthiotransferase [Haemophilus
           somnus 129PT]
          Length = 443

 Score =  380 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 128/457 (28%), Positives = 213/457 (46%), Gaps = 40/457 (8%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
             S GC  N+ DS R+     S GY  ++S + ADL+++NTC   + A ++    +G   
Sbjct: 9   FISLGCPKNLVDSERILTELRSDGYNIISSYEGADLVIVNTCGFIDSAVQESLESIGEAL 68

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
                      +  V+V GC+  A+  +I    P V  + GP +Y  + + + +      
Sbjct: 69  E---------NNGKVIVTGCLG-AKENQIREIHPQVLEITGPHSYEAVMKHVHKY----- 113

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
                   E       +   G        A+L I EGCD  CTFC++P  RG   SRS+ 
Sbjct: 114 ----VPKPEYSPYTSLVPKHGIKLTPKHYAYLKISEGCDHRCTFCIIPSMRGDLDSRSIV 169

Query: 209 QVVDEARKLIDNGVCEITLLGQNV----------NAWRGKGLDGE--KCTFSDLLYSLSE 256
            ++DEA++L+D GV EI ++ Q+           NA +    +G   K     L   L  
Sbjct: 170 HILDEAKRLVDAGVKEILVVSQDTSAYALDKKKENASKTVFWNGMPIKNDLITLCEKLGS 229

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           +   VRL Y   +P   +   + A G    ++PYL +P+Q  S +ILK M R  +     
Sbjct: 230 LGAWVRLHYVYPYPHVDNLIPLMAEG---KILPYLDIPLQHASPKILKMMKRPGSIERTL 286

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
           + I + R + PD+ + S FIVGFPGET++DF+  +D + +    +   FK+SP  G   +
Sbjct: 287 ERIKKWREICPDLTLRSTFIVGFPGETEEDFQLLLDFLQEAQLDRVGCFKFSPVEGAVAT 346

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPW 434
           +M +Q+ E +K ER     +  ++         +G+ + V+I++  +E   G+ +  +P 
Sbjct: 347 DMEDQIPEEIKEERFHRFMQLQQKISAERLRQKIGRTLPVIIDEIDEEGIIGRTMADAPE 406

Query: 435 LQSVV----LNSKNHNIGDIIKVRITDVKISTLYGEL 467
           +  VV     +     +G II V IT+     L+GE+
Sbjct: 407 IDGVVYVDNFSKVEVKLGQIINVTITNADEYDLWGEI 443


>gi|332704961|ref|ZP_08425047.1| SSU ribosomal protein S12P methylthiotransferase [Lyngbya majuscula
           3L]
 gi|332356313|gb|EGJ35767.1| SSU ribosomal protein S12P methylthiotransferase [Lyngbya majuscula
           3L]
          Length = 440

 Score =  380 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 128/453 (28%), Positives = 220/453 (48%), Gaps = 21/453 (4%)

Query: 23  VPQR--FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKV 80
           + ++    +   GC+ N  D+  M  +    GY+   + + AD +++NTC   E+A  + 
Sbjct: 1   MGKKPTVAISHLGCEKNRIDTEHMLGLLVQAGYQVDANEELADYVIVNTCSFIEEARRES 60

Query: 81  YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140
              L  +               +V+ GC+AQ    ++L   P    VVG   Y+++ +++
Sbjct: 61  VRTLVELAEANQK---------IVITGCMAQHFQSQLLEELPEAVAVVGTGDYHKIVDVI 111

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           +R   G RV +   S E  +              GV A+L + EGCD  C+FC++P+ RG
Sbjct: 112 QRVETGDRVQEV--STEPSYIADETTPRYRTTSEGV-AYLRVAEGCDYRCSFCIIPHLRG 168

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            + SR++  +V EA +L   GV E+ L+ Q +    G  +  E    ++LL +L E+  +
Sbjct: 169 KQRSRTIESIVAEAEQLASQGVQELILISQ-ITTNYGLDIYSEPK-LAELLRALGEVD-I 225

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
             +R   ++P  ++  +IKA  +   ++PYL LP+Q     IL+SMNR         II 
Sbjct: 226 PWIRIHYAYPTGLTPSVIKAIQETHNVLPYLDLPLQHSHPEILRSMNRPWQGRVNDAIIK 285

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++++  PD  + + FIVGFPGET+  F   ++ V          F +S   GT    +  
Sbjct: 286 QLKTALPDAVLRTTFIVGFPGETEQHFEHLLEFVQHHECDHVGVFTFSAEEGTAAYKLPN 345

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQ 436
           Q+ + V   R   L    +   +  N  C+G+I++VLIE+     G+L+GRS    P + 
Sbjct: 346 QLPQGVMDARRDALMAVQQPISLKKNQNCLGKIVDVLIEQENPLTGELIGRSARFAPEVD 405

Query: 437 SVVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
            +V    + ++G I+ V ITD  +  LYG +V+
Sbjct: 406 GLVYVQGDASLGTIVSVEITDSDVYDLYGSVVL 438


>gi|156741270|ref|YP_001431399.1| MiaB-like tRNA modifying protein YliG [Roseiflexus castenholzii DSM
           13941]
 gi|238066619|sp|A7NIS8|RIMO_ROSCS RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|156232598|gb|ABU57381.1| MiaB-like tRNA modifying enzyme YliG [Roseiflexus castenholzii DSM
           13941]
          Length = 482

 Score =  380 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 126/471 (26%), Positives = 219/471 (46%), Gaps = 36/471 (7%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +  + + GC  N  DS  M  +  +QG+    S DDAD++++NTC     A E+  + L 
Sbjct: 3   KVHIITLGCPKNQVDSEGMSGILAAQGHTLAASADDADVVIVNTCSFIAAAREETLAVLR 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE---- 141
            +   K        +  +V AGC+A++    I+  +P V+  +G + + R+ E++E    
Sbjct: 63  DVAACKT------PEQRLVAAGCMAESHRA-IVAATPGVDATLGTREWTRIAEVVETFQP 115

Query: 142 --------RARFGKRVVDTDYSVEDKFERLSIVDGGY---------NRKRGVTAFLTIQE 184
                    A   + +  T   V         V G Y          R  G +A+L I +
Sbjct: 116 AATMAPLNAASAREIIPLTSAGVPSPAPHDLSVPGAYADWRTAPIRRRAVGPSAYLKISD 175

Query: 185 GCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK 244
           GC+  C FC +P  +G   S+++  ++ EA++L   GV EI L+ Q++    G+ L  + 
Sbjct: 176 GCNLRCAFCTIPSFKGDMRSKAIGAILGEAQELAAAGVKEIVLVAQHLT-DYGRDLGLKD 234

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304
                L    + +   V +R   ++P  + + LI        +  YL +P+Q      L+
Sbjct: 235 GLAILLDEICAVLPENVWVRLMYAYPHGIGERLIATMARHPQICHYLDMPLQHAHPETLR 294

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
            M R       R++ID +R+  PDIAI S FIVGFPGET+ +FRA +  ++ + + +   
Sbjct: 295 RMRRPPDTDRTRRLIDDLRAAIPDIAIRSTFIVGFPGETNTEFRALLAFLEDVQFDRVGV 354

Query: 365 FKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-K 423
           F+YS   GTP + + +Q+   +   R   + +  +      N   +G+++ VL+E  G  
Sbjct: 355 FRYSREPGTPAAALPDQLAPRIIERRWHEIMRLQQRISRERNRRWLGRVVRVLVEGQGQT 414

Query: 424 EKGKL--VGRS----PWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           + G++  VGRS    P +   VL       G  + VR+T      L+G++V
Sbjct: 415 DDGRMLSVGRSFRDAPEVDGQVLFWGAATPGTFVDVRVTQALDYDLWGDVV 465


>gi|294637044|ref|ZP_06715359.1| RNA modification enzyme, MiaB-family [Edwardsiella tarda ATCC
           23685]
 gi|291089741|gb|EFE22302.1| RNA modification enzyme, MiaB-family [Edwardsiella tarda ATCC
           23685]
          Length = 446

 Score =  380 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 131/464 (28%), Positives = 221/464 (47%), Gaps = 35/464 (7%)

Query: 16  QIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREK 75
            + +Q   P+  F+ S GC  N+ DS R+     ++GY  V + +DADL+++NTC   + 
Sbjct: 5   AMSNQSRQPKIGFI-SLGCPKNLVDSERILTELRTEGYLVVPTYEDADLVIVNTCGFIDS 63

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135
           A ++    +G              +  V+V GC+  A+  +I    P V  + GP +Y +
Sbjct: 64  AVQESLEAIGEA---------LNENGKVIVTGCLG-AKENQIREVHPKVLEISGPHSYEQ 113

Query: 136 LPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
           +   + +               + F  L + + G        A+L I EGC+  C FC++
Sbjct: 114 VLHHVHKY--------VAKPQHNPFTSL-VPEQGVKLTPKHFAYLKISEGCNHRCAFCII 164

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTF 247
           P  RG   SR +  V+DEA++L D+GV E+ ++ Q+ +A+      R    +G+  K + 
Sbjct: 165 PSLRGDLESRPIGAVLDEAKRLADSGVKELLVISQDTSAYGADIQQRTGFWNGQPVKTSM 224

Query: 248 SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307
             L   L+ +   VRL Y   +P       + A G    L+PYL +P+Q  S RILK M 
Sbjct: 225 LSLCEQLATLGVWVRLHYVYPYPHVDDVIPLMAAG---KLLPYLDIPLQHASPRILKLMK 281

Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           R        + I R R + P + + S FIVGFPGET++DF+  +D + +    +   F+Y
Sbjct: 282 RPGAVERTLERIKRWREICPQLTLRSTFIVGFPGETEEDFQMLLDFLREARLDRVGCFQY 341

Query: 368 SPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-- 425
           SP  G   + + +QV + VK  R     +  ++         VG  + V+I++  +E   
Sbjct: 342 SPVEGAAANALPDQVADEVKQARYDRFMQLQQQISAERLQEKVGLTLPVIIDEVDEEGAI 401

Query: 426 GKLVGRSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGEL 467
           G+ +  +P +  VV  +   N+  GDI+ V I +V    ++G L
Sbjct: 402 GRSMADAPEIDGVVYLNGERNVKAGDIVNVTIENVDEYDMWGSL 445


>gi|124005536|ref|ZP_01690376.1| conserved hypothetical protein [Microscilla marina ATCC 23134]
 gi|123988970|gb|EAY28563.1| conserved hypothetical protein [Microscilla marina ATCC 23134]
          Length = 437

 Score =  380 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 121/452 (26%), Positives = 213/452 (47%), Gaps = 34/452 (7%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSM--DDADLIVLNTCHIREKAAEKVYSF 83
           +  + + GC  N+ DS  +            +    D+A+++++NTC   E A ++    
Sbjct: 10  KVNIVTLGCSKNLVDSENILTQLRGNDIAVTHEAQNDEANVVIVNTCGFIENAKQESIDT 69

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           + +  + K      G    + V GC++Q   +++ +    V+   G +     P LL++ 
Sbjct: 70  ILQYADAKEQ----GLIDKLYVTGCLSQRYKDDLEKEITTVDAFFGTRDL---PLLLKKF 122

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           +        DY  E   ERL+     Y       A++ I EGCD+ C+FC +P  RG  +
Sbjct: 123 K-------ADYKHELVGERLTTTPRHY-------AYMKIAEGCDRPCSFCAIPIMRGKHV 168

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           S  + ++V  A+ +  NG  E+ L+ Q++  + G  L  +K   ++L+  L++++G+  +
Sbjct: 169 SHPMEELVKSAQTMAKNGTKELILIAQDLT-YYGLDLY-KKRNLAELMARLADVEGIEWI 226

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R   ++P      ++ A      +  YL +P+Q GS  +LK M R  T  +  Q+ID IR
Sbjct: 227 RLQYAYPAGFPLDILDAIKQYPNVCNYLDMPLQHGSSNVLKLMRRGITREKTEQLIDTIR 286

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              P+IA+ +  I G PGET+ DF      V+K  + +   F YS    T    M + V 
Sbjct: 287 QKVPEIALRTTLIAGHPGETEADFEEMYTFVEKSRFDRLGIFTYSHEDNTHSFTMKDDVP 346

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVV 439
           E VK +R   +    +E     N   VG+ ++V+I++  KE G  +GR+    P + + V
Sbjct: 347 EEVKEDRAGQVMALQQEISAELNQQKVGKTLKVMIDR--KEGGYFIGRTESDSPEVDNEV 404

Query: 440 LNSKN---HNIGDIIKVRITDVKISTLYGELV 468
           L S       +G+   ++I +     LYGELV
Sbjct: 405 LISAENTYLPVGEFAPIKIINATEFDLYGELV 436


>gi|169342699|ref|ZP_02863740.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Clostridium
           perfringens C str. JGS1495]
 gi|169299205|gb|EDS81275.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Clostridium
           perfringens C str. JGS1495]
          Length = 445

 Score =  380 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 144/453 (31%), Positives = 224/453 (49%), Gaps = 21/453 (4%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           +   +  + S GC  N  DS  M  M  ++ YE  N+  +AD+I++NTC   EKA ++  
Sbjct: 1   MAKYKVGMVSLGCDKNRVDSEIMLGMVQNE-YELTNNPKEADIIIVNTCGFIEKAKQESI 59

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           + +  +   K S        L++  GC+ Q  G+E+L   P +++++G   Y ++ E + 
Sbjct: 60  NTILDMAKYKTSH----NCKLLIATGCLTQRYGDELLELMPEIDIMLGVNDYAKINEGIM 115

Query: 142 RARFG--KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
               G  ++V  T+YS     E L ++          TA+L I EGCD FCT+C++P  R
Sbjct: 116 NFINGNNEKVKATNYSDVSINEGLRLI-----TTDKATAYLRIAEGCDNFCTYCIIPKIR 170

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G   SR+L  +V+EA+KL +NGV E+ L+ Q+     G  + GEK     +L  L++I+G
Sbjct: 171 GKFRSRALESIVEEAKKLAENGVKELILIAQDTT-NYGIDIYGEKK-LHLVLRELAKIEG 228

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           +  +R    +P  + D LIK     D +  YL LP+Q  S+ +LK M R+ T  E    I
Sbjct: 229 IEWIRVLYCYPEAIYDELIKEISVNDKVCNYLDLPIQHISNNVLKRMGRKTTKEEIIGKI 288

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
           + +R   P+I + +  IVGFPGE+ +DF    D +  I   +   F YS   GTP + M 
Sbjct: 289 NDLRKNVPNIVLRTSLIVGFPGESCEDFNELKDFIKTIKLDKVGVFTYSREEGTPAAIME 348

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWL 435
           +Q+DE VK  R   +    +E     N   VG+  +VLIEK   E    VGRS    P +
Sbjct: 349 DQIDEEVKKAREEEIMLLQKEVSEEINKNKVGREYDVLIEKFNGE--YYVGRSYEMAPDI 406

Query: 436 QS-VVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
              + +           KV+I       L G +
Sbjct: 407 DGCIYVKGNGAKKDQFCKVKIEKALEYDLVGVV 439


>gi|297624233|ref|YP_003705667.1| MiaB-like tRNA modifying enzyme YliG [Truepera radiovictrix DSM
           17093]
 gi|297165413|gb|ADI15124.1| MiaB-like tRNA modifying enzyme YliG [Truepera radiovictrix DSM
           17093]
          Length = 450

 Score =  380 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 133/461 (28%), Positives = 222/461 (48%), Gaps = 39/461 (8%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           +  +    S GC   + DS R+     ++GY  V S D+A+++V+NTC     A E+  +
Sbjct: 1   MSGKVGFVSLGCPKALVDSERILTQLRAEGYRVVPSYDEAEVVVVNTCGFITPAVEESLN 60

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +G                 V+V GC+ +   E+I+ R P V  V G      +   + R
Sbjct: 61  AIGEALA---------HTGKVIVTGCLGER-PEKIMARHPSVLAVTGQADVAGVMAAVHR 110

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
                         +D      +   G        ++L I EGC+  C FC++P  RG++
Sbjct: 111 VL----------PPDDNPFTSLVPPQGVKLTPRHYSYLKIAEGCNHKCAFCIIPQLRGLQ 160

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSD---------LLYS 253
           +SR   +V+ EA +L+ +G  E+ ++ Q+ +A  G  L   +  F           L+  
Sbjct: 161 VSRDAGEVLYEAYRLVASGTKELLVIAQDSSA-YGVDLRHRESAFQGRQVAAHLVPLVRE 219

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
           LS++   VRL Y   +P      LI    +   L+PYL +P+Q  S ++L++M R   A 
Sbjct: 220 LSDMGAWVRLHYVYPYPHV--RELIPLMAE-GKLLPYLDVPLQHASPKVLRAMRRPGGAE 276

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
            + + I   R+V P++AI S FIVGFPGET++DF   +D + +    +  +F YS   G 
Sbjct: 277 SHLKTIRAWRAVCPELAIRSTFIVGFPGETEEDFEQLLDFLQEARLERVGAFTYSEVPGA 336

Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS- 432
             +   +QV E VK ER   L    +   +  N A VG+++EV+++ +G+  G++VGR+ 
Sbjct: 337 VANGFPDQVPEAVKQERFDRLMAVQQRISLEKNQAKVGRVLEVIVDDYGELPGEVVGRTK 396

Query: 433 ---PWLQSVVLNSKNH--NIGDIIKVRITDVKISTLYGELV 468
              P +   VL + +    IGDI++V++T      L GE+V
Sbjct: 397 ADAPGIDGTVLATGDGTTKIGDIVRVKVTGATAYDLSGEVV 437


>gi|182417560|ref|ZP_02626322.2| conserved hypothetical protein [Clostridium butyricum 5521]
 gi|237667762|ref|ZP_04527746.1| conserved hypothetical protein [Clostridium butyricum E4 str. BoNT
           E BL5262]
 gi|182378573|gb|EDT76101.1| conserved hypothetical protein [Clostridium butyricum 5521]
 gi|237656110|gb|EEP53666.1| conserved hypothetical protein [Clostridium butyricum E4 str. BoNT
           E BL5262]
          Length = 464

 Score =  380 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 128/451 (28%), Positives = 218/451 (48%), Gaps = 22/451 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +  + S GC  N  DS  +     S+ Y   N+  +AD++++NTC   E A ++    + 
Sbjct: 23  KVGIISLGCDKNRVDSEIILGNM-SRDYTITNNPKEADILIVNTCGFIESAKQESIDTIL 81

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            + + K +        L++  GC+ Q   EE+    P +++++G   Y ++  ++     
Sbjct: 82  EMADYKVNYK----CKLLIATGCLIQRYSEELGELIPELDLMLGVNDYDKINSVITNFIN 137

Query: 146 G--KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           G  K+    +Y+ E   E   I+       +  +A++ I EGC+ FCT+C++P  RG   
Sbjct: 138 GNEKKEGLVNYTDEGINEGSRIL-----TTQKGSAYIRIAEGCNNFCTYCIIPKIRGKFR 192

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR +  ++ EA +L   G+ E+ L+ Q+     G  + G+K    +LL  LS+I+G+  +
Sbjct: 193 SRKMENILKEAEELASQGIKELILIAQDTTM-YGSDIYGKK-NLHELLNELSKIEGIEWI 250

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R    +P ++ D LI      + ++ YL LP+Q  S+ +LK M R+ T     + ID +R
Sbjct: 251 RVLYCYPEEIYDELIDEMAQNNKVVKYLDLPIQHISNHVLKLMGRKTTKEAILKKIDTLR 310

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              P + I + FIVGFP ET++DF    D +      +   F YS    TP + M  Q+D
Sbjct: 311 ERIPGMIIRTTFIVGFPQETEEDFNEIKDFLQDYKLEKVGVFTYSQEENTPAARMDGQID 370

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVV 439
           E VK +R   L    +      N+  +G+I ++L+E +  E     GRS    P + + V
Sbjct: 371 EEVKKQREKDLMLLQKGISEKINELKIGKIYDILVEGYDGED--YRGRSYEMAPEIDAEV 428

Query: 440 LNS--KNHNIGDIIKVRITDVKISTLYGELV 468
                 N  IG  +KV+IT      L G +V
Sbjct: 429 FFKCNDNLEIGTFVKVKITKSMDYDLLGVVV 459


>gi|191166154|ref|ZP_03027988.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli B7A]
 gi|190903763|gb|EDV63478.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli B7A]
          Length = 441

 Score =  380 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 135/460 (29%), Positives = 223/460 (48%), Gaps = 35/460 (7%)

Query: 22  IVPQ-RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKV 80
           + PQ +    S GC  N+ DS R+     ++GY+ V S DDAD++++NTC   + A ++ 
Sbjct: 4   VTPQPKIGFVSLGCPKNLVDSERILTELRTEGYDVVPSYDDADMVIVNTCGFIDSAVQES 63

Query: 81  YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140
              +G              +  V+V GC+  A+ ++I    P V  + GP +Y ++ E +
Sbjct: 64  LEAIGEA---------LNENGKVIVTGCLG-AKEDQIREVHPKVLEITGPHSYEQVLEHV 113

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
                            + F  L + + G        A+L I EGC+  CTFC++P  RG
Sbjct: 114 HHY--------VPKPKHNPFLSL-VPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRG 164

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA------WRGKGLDGE--KCTFSDLLY 252
             +SR + +V+ EA++L+D GV EI ++ Q+ +A       R    +GE  K +   L  
Sbjct: 165 DLVSRPIGEVLSEAKRLVDAGVKEILVISQDTSAYGVDVKHRTGFHNGEPVKTSMVSLCE 224

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
            LS++    RL Y   +P       + A G    ++PYL +P+Q  S RILK M R  + 
Sbjct: 225 QLSKLGIWTRLHYVYPYPHVDDVIPLMAEG---KILPYLDIPLQHASPRILKLMKRPGSV 281

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
                 I + R + P++ + S FIVGFPGET++DF+  +D + +    +   FKYSP  G
Sbjct: 282 DRQLARIKQWREICPELTLRSTFIVGFPGETEEDFQMLLDFLKEARLDRVGCFKYSPVEG 341

Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVG 430
              + + +QV E VK ER     +  ++         VG+ I V+I++  +E   G+ + 
Sbjct: 342 ADANALPDQVPEEVKEERWNRFMQLQQQISAERLQEKVGREILVIIDEVDEEGAIGRSMA 401

Query: 431 RSPWLQS-VVLNSK-NHNIGDIIKVRITDVKISTLYGELV 468
            +P +   V LN + N    DI++V++       L+G  V
Sbjct: 402 DAPEIDGAVYLNGETNVKPSDILRVKVEHADEYDLWGSRV 441


>gi|192360739|ref|YP_001982368.1| MiaB-like tRNA modifying enzyme YliG [Cellvibrio japonicus Ueda107]
 gi|238065319|sp|B3PGP3|RIMO_CELJU RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|190686904|gb|ACE84582.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Cellvibrio
           japonicus Ueda107]
          Length = 451

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 124/465 (26%), Positives = 202/465 (43%), Gaps = 33/465 (7%)

Query: 16  QIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREK 75
            +             S GC  N+ DS R+      +GY  V S +DAD++++NTC   + 
Sbjct: 8   PMKSSSTSNPTIGFVSLGCPKNLVDSERILTQLRMEGYNIVPSYNDADMVIVNTCGFIDS 67

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135
           A ++    +G              +  V+V GC+  A+ +EI++  P V  + G   Y  
Sbjct: 68  AVQESLGAIGEA---------LNENGKVLVTGCLG-AKKDEIIQVHPNVLGITGAHAYEE 117

Query: 136 LPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
           +   +       +         + F  L    G     R   A+L I EGC+  C+FC++
Sbjct: 118 VLAQVHEHLPPSQ-------THNPFTDLVPPQGIKLTPRHY-AYLKISEGCNHSCSFCII 169

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA------WRGKGLDGE--KCTF 247
           P  RG  +SR + QV+ EA +L+  GV E+ ++ Q+ +A       R    DG   K   
Sbjct: 170 PDMRGKLVSRPIGQVMGEAERLVKAGVKELLVISQDTSAYGVDIKHRTDFWDGRPLKTDM 229

Query: 248 SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307
             L  +L E+   VRL Y   +P   +   + A G    ++PYL +P Q  S  +L+ M 
Sbjct: 230 YQLAAALGELGVWVRLHYVYPYPHVDNVIPLMAQG---KVLPYLDIPFQHASPTLLRKMR 286

Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           R     +  + I   R   P++ + S FIVGFPGET+ DF   +  +++    +   F+Y
Sbjct: 287 RPGQVEKTLERIKNWREQVPNLTLRSTFIVGFPGETEADFEELLGFLEEAQLDRVGCFQY 346

Query: 368 SPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-- 425
           SP  G   + + + V + +K  R     +  +          VGQ + VLI++   E   
Sbjct: 347 SPVEGAKANELPDPVLDEIKQARYDRFMQLQQRISTERLKQKVGQTLPVLIDEVDDEGAI 406

Query: 426 GKLVGRSPWLQS-VVLNSK-NHNIGDIIKVRITDVKISTLYGELV 468
           G+    +P +   V LN       GDI+ V+I       L+G  V
Sbjct: 407 GRSYADAPEIDGCVYLNGDIQVKPGDIVNVQIEHSDEYDLWGTRV 451


>gi|327402650|ref|YP_004343488.1| 30S ribosomal protein S12P methylthiotransferase [Fluviicola
           taffensis DSM 16823]
 gi|327318158|gb|AEA42650.1| SSU ribosomal protein S12P methylthiotransferase [Fluviicola
           taffensis DSM 16823]
          Length = 437

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 122/462 (26%), Positives = 216/462 (46%), Gaps = 34/462 (7%)

Query: 17  IVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSM--DDADLIVLNTCHIRE 74
           +  + +   +  V + GC  N +DS  +     +  +E  +    DD++++++NTC   +
Sbjct: 1   MKTKTLRKNKVNVVTLGCAKNTFDSEVLMAQLKANKFEVEHEAKQDDSEIVIINTCGFID 60

Query: 75  KAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYY 134
            A ++    + R  + KN     G    V V GC+ Q   +++ +  P V+   G +   
Sbjct: 61  NAKQESIDTILRYADAKNE----GLVDKVYVTGCLVQRYKDDLEQEIPEVDAFFGTRDLP 116

Query: 135 RLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCV 194
           RL + L+           DY  E   ERL      Y       A+  I EGCD+ C+FC 
Sbjct: 117 RLLKTLK----------ADYKHELVGERLLTTPSHY-------AYFKIAEGCDRPCSFCA 159

Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL 254
           +P  RG  +S  + Q+V  A+ L   GV EI L+ Q++  + G  +  +K   ++LL  L
Sbjct: 160 IPLMRGKHVSTPMDQLVASAKSLAAQGVKEILLIAQDLT-YYGLDIY-KKRNLAELLDQL 217

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
           + ++G+  +R   + P      ++ A      +  YL +P+Q GS +IL+SM R  T  +
Sbjct: 218 AAVEGIEWIRLHYAFPAGFPMDVLDAMVKYPNVCLYLDMPLQHGSTKILQSMRRGITREK 277

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
              ++  IR   P IAI +  I G+PGET++DF+  +D V+++ + +   F YS    T 
Sbjct: 278 TEALVHTIREKVPGIAIRTTLIAGYPGETEEDFQEMVDFVERMRFDRLGIFTYSHEEDTH 337

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS-- 432
             ++ + V + VK +R   + +         N   +G+  +VL ++   E    +GR+  
Sbjct: 338 AHSLEDDVPDEVKRQRADEIMELQSGISYELNQTKIGKTFKVLFDRI--EGDYFIGRTEF 395

Query: 433 --PWLQSVVLNSKNH---NIGDIIKVRITDVKISTLYGELVV 469
             P + + VL  K+    ++GD   V IT      LYG+  +
Sbjct: 396 DSPEVDNEVLVKKSEGYVSVGDFALVEITSADHYDLYGKFAM 437


>gi|227539201|ref|ZP_03969250.1| 2-methylthioadenine synthetase [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227240883|gb|EEI90898.1| 2-methylthioadenine synthetase [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 444

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 125/468 (26%), Positives = 225/468 (48%), Gaps = 37/468 (7%)

Query: 13  MVSQIVDQCIVPQR--FFVKSYGCQMNVYDSLRMEDMFFSQGYERVN---SMDDADLIVL 67
           M ++ V    + Q+    V + GC  N++DS  +         E V+   ++ + D++V+
Sbjct: 1   MKTKSVRPAEIKQKPRVNVITLGCSKNIHDSEVLMGQLKGNQMEVVHEASNIQNNDIVVI 60

Query: 68  NTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVV 127
           NTC   + A ++    + +   LK      G    V+V GC+++    E+      V+  
Sbjct: 61  NTCGFIDNAKQESIDTILQYSELKEQ----GKINKVIVTGCLSERYKPELQAEISSVDAY 116

Query: 128 VGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCD 187
            G       PELL         +  DY  E   ER+      +       ++  I EGC+
Sbjct: 117 FGTNDL---PELLSS-------IGADYRHELLGERMLSTPSHF-------SYFKIAEGCN 159

Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTF 247
           + C+FC +P  RG  +S+S+  +V EA+ L  NG  E+ L+ Q++  + G  + G++   
Sbjct: 160 RPCSFCAIPLMRGKHVSKSMEDLVKEAKFLASNGTKELILIAQDLT-YYGLDIYGKR-NL 217

Query: 248 SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307
           SDLL +LS++ G+  +R   ++P      ++ A  +   +  YL +P+Q  SD +LKSM 
Sbjct: 218 SDLLRNLSDVDGIEWIRLQYAYPSGFPMDILDAMAERSNICNYLDMPLQHISDNMLKSMR 277

Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           R  T  +   ++++IR   PDIA+ +  I G+PGET+ DF+  ++ V+   + +   F Y
Sbjct: 278 RGTTKQKQIDLVNQIRDKVPDIALRTTLICGYPGETEQDFQEMLEWVEDSRFDRLGCFTY 337

Query: 368 SPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK 427
           S    T   ++ + + E VK  R+  + +  +      N   +G+I +VL++K   +   
Sbjct: 338 SHEEKTHAYSLTDDIPEEVKESRVEQIMEVQQGISYDINQEKIGKIYKVLVDKV--DGDY 395

Query: 428 LVGRS----PWLQSVVLNSKNH---NIGDIIKVRITDVKISTLYGELV 468
            +GR+    P + + VL S       IGD ++V+I   +   LYG +V
Sbjct: 396 FIGRTEYDSPEVDNEVLISAKDAYARIGDFVQVKIDRAEDFDLYGTIV 443


>gi|170718739|ref|YP_001783927.1| ribosomal protein S12 methylthiotransferase [Haemophilus somnus
           2336]
 gi|238066256|sp|B0US28|RIMO_HAES2 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|168826868|gb|ACA32239.1| MiaB-like tRNA modifying enzyme YliG [Haemophilus somnus 2336]
          Length = 443

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 128/457 (28%), Positives = 213/457 (46%), Gaps = 40/457 (8%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
             S GC  N+ DS R+     S GY  ++S + ADL+++NTC   + A ++    +G   
Sbjct: 9   FISLGCPKNLVDSERILTELRSDGYNIISSYEGADLVIVNTCGFIDSAVQESLESIGEAL 68

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
                      +  V+V GC+  A+  +I    P V  + GP +Y  + + + +      
Sbjct: 69  E---------NNGKVIVTGCLG-AKENQIREIHPQVLEITGPHSYEAVMKHVHKY----- 113

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
                   E       +   G        A+L I EGCD  CTFC++P  RG   SRS+ 
Sbjct: 114 ----VPKPEYSPYTSLVPKQGIKLTPKHYAYLKISEGCDHRCTFCIIPSMRGDLDSRSIV 169

Query: 209 QVVDEARKLIDNGVCEITLLGQNV----------NAWRGKGLDGE--KCTFSDLLYSLSE 256
            ++DEA++L+D GV EI ++ Q+           NA +    +G   K     L   L  
Sbjct: 170 HILDEAKRLVDAGVKEILVVSQDTSAYALDKKKENASKTVFWNGMPIKNDLITLCEKLGS 229

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           +   VRL Y   +P   +   + A G    ++PYL +P+Q  S +ILK M R  +     
Sbjct: 230 LGAWVRLHYVYPYPHVDNLIPLMAEG---KILPYLDIPLQHASPKILKMMKRPGSIERTL 286

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
           + I + R + PD+ + S FIVGFPGET++DF+  +D + +    +   FK+SP  G   +
Sbjct: 287 ERIKKWREICPDLTLRSTFIVGFPGETEEDFQLLLDFLQEAQLDRVGCFKFSPVEGAVAT 346

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPW 434
           +M +Q+ E +K ER     +  ++         +G+ + V+I++  +E   G+ +  +P 
Sbjct: 347 DMEDQIPEEIKEERFHRFMQLQQKISAERLRQKIGRTLSVIIDEIDEEGIIGRTMADAPE 406

Query: 435 LQSVV----LNSKNHNIGDIIKVRITDVKISTLYGEL 467
           +  VV     +     +G II V IT+     L+GE+
Sbjct: 407 IDGVVYVDNFSKVEVKLGQIINVTITNADEYDLWGEI 443


>gi|15596113|ref|NP_249607.1| hypothetical protein PA0916 [Pseudomonas aeruginosa PAO1]
 gi|107100372|ref|ZP_01364290.1| hypothetical protein PaerPA_01001397 [Pseudomonas aeruginosa PACS2]
 gi|218893115|ref|YP_002441984.1| hypothetical protein PLES_44001 [Pseudomonas aeruginosa LESB58]
 gi|254245200|ref|ZP_04938522.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
 gi|313105799|ref|ZP_07792062.1| hypothetical protein PA39016_000110096 [Pseudomonas aeruginosa
           39016]
 gi|81541685|sp|Q9I541|RIMO_PSEAE RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|9946818|gb|AAG04305.1|AE004525_13 conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
 gi|126198578|gb|EAZ62641.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
 gi|218773343|emb|CAW29155.1| conserved hypothetical protein [Pseudomonas aeruginosa LESB58]
 gi|310878564|gb|EFQ37158.1| hypothetical protein PA39016_000110096 [Pseudomonas aeruginosa
           39016]
          Length = 440

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 134/460 (29%), Positives = 214/460 (46%), Gaps = 34/460 (7%)

Query: 21  CIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKV 80
              P+  FV S GC   + DS R+      +GYE V + +DAD++V+NTC   + A  + 
Sbjct: 3   TPTPKVGFV-SLGCPKALVDSERILTQLRMEGYEVVPTYEDADVVVVNTCGFIDSAKAES 61

Query: 81  YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140
              +G              +  V+V GC+   E   I    P V  V GPQ Y ++   +
Sbjct: 62  LEVIGEA---------IAENGKVIVTGCMGVEEHA-IRDVHPSVLAVTGPQQYEQVVTAV 111

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
                           E       +   G        A+L I EGC+  C+FC++P  RG
Sbjct: 112 HEV--------VPPKTEHNPLVDLVPPQGVKLTPRHYAYLKISEGCNHSCSFCIIPSMRG 163

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLY 252
             +SR +  V+ EA +L+  GV E+ ++ Q+ +A+      +    +G+  K    +L  
Sbjct: 164 KLVSRPVGDVLSEAERLVKAGVKELLVISQDTSAYGVDLKYKTDFWNGQPVKTRMKELCE 223

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
           +LS +   VRL Y   +P       + A G    L+PYL +P Q  S ++LK+M R    
Sbjct: 224 ALSSMGVWVRLHYVYPYPNVDDVIPLMAAG---KLLPYLDIPFQHASPKVLKAMKRPAFE 280

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
            +    I + R + P++ I S FIVGFPGET++DF+  +D + +    +   F+YSP  G
Sbjct: 281 DKTLARIKQWREICPELTIRSTFIVGFPGETEEDFQYLLDWLTEAQLDRVGCFQYSPVEG 340

Query: 373 TPGSNM-LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLV 429
            P + + LE V + VK +R        +    +     VG+ IEVLI++  ++   G+  
Sbjct: 341 APANELGLEPVPDEVKQDRWERFMAHQQAISAARLQLKVGKEIEVLIDEVDEQGAVGRSW 400

Query: 430 GRSPWLQS-VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
             +P +   V ++S     GD ++VRITD     L+ ELV
Sbjct: 401 ADAPEIDGNVFVDSDELKPGDKVRVRITDADEYDLWAELV 440


>gi|116048839|ref|YP_792360.1| hypothetical protein PA14_52420 [Pseudomonas aeruginosa UCBPP-PA14]
 gi|122257946|sp|Q02I76|RIMO_PSEAB RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|115584060|gb|ABJ10075.1| conserved hypothetical protein [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 440

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 134/460 (29%), Positives = 214/460 (46%), Gaps = 34/460 (7%)

Query: 21  CIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKV 80
              P+  FV S GC   + DS R+      +GYE V + +DAD++V+NTC   + A  + 
Sbjct: 3   TPTPKVGFV-SLGCPKALVDSERILTQLRMEGYEVVPTYEDADVVVVNTCGFIDSAKAES 61

Query: 81  YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140
              +G              +  V+V GC+   E   I    P V  V GPQ Y ++   +
Sbjct: 62  LEVIGEA---------IAENGKVIVTGCMGVEEH-TIRDVHPSVLAVTGPQQYEQVVTAV 111

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
                           E       +   G        A+L I EGC+  C+FC++P  RG
Sbjct: 112 HEV--------VPPKTEHNPLVDLVPPQGVKLTPRHYAYLKISEGCNHSCSFCIIPSMRG 163

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLY 252
             +SR +  V+ EA +L+  GV E+ ++ Q+ +A+      +    +G+  K    +L  
Sbjct: 164 KLVSRPVGDVLSEAERLVKAGVKELLVISQDTSAYGVDLKYKTDFWNGQPVKTRMKELCE 223

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
           +LS +   VRL Y   +P       + A G    L+PYL +P Q  S ++LK+M R    
Sbjct: 224 ALSSMGVWVRLHYVYPYPNVDDVIPLMAAG---KLLPYLDIPFQHASPKVLKAMKRPAFE 280

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
            +    I + R + P++ I S FIVGFPGET++DF+  +D + +    +   F+YSP  G
Sbjct: 281 DKTLARIKQWREICPELTIRSTFIVGFPGETEEDFQYLLDWLTEAQLDRVGCFQYSPVEG 340

Query: 373 TPGSNM-LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLV 429
            P + + LE V + VK +R        +    +     VG+ IEVLI++  ++   G+  
Sbjct: 341 APANELGLEPVPDEVKQDRWERFMAHQQAISAARLQLKVGKEIEVLIDEVDEQGAVGRSW 400

Query: 430 GRSPWLQS-VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
             +P +   V ++S     GD ++VRITD     L+ ELV
Sbjct: 401 ADAPEIDGNVFVDSDELKPGDKVRVRITDADEYDLWAELV 440


>gi|242020507|ref|XP_002430694.1| CDK5 regulatory subunit-associated protein, putative [Pediculus
           humanus corporis]
 gi|212515884|gb|EEB17956.1| CDK5 regulatory subunit-associated protein, putative [Pediculus
           humanus corporis]
          Length = 581

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 150/480 (31%), Positives = 246/480 (51%), Gaps = 46/480 (9%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           Q+ F++ +GCQMNV D+  +  +    GY+R  S DDAD+I + TC IRE A  K++   
Sbjct: 80  QKVFLEVHGCQMNVNDAEIVLSVLQKHGYQRTLSKDDADVIFILTCSIRESAESKIWFK- 138

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
                  N   K+  +L + + GC+A+   ++++ +  IV++V GP  Y  LP LL    
Sbjct: 139 ---LKELNHLKKKKKNLKIGLLGCMAERLKDKVIEKEKIVDLVAGPDAYKDLPRLLTTTS 195

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
             ++ ++   S ++ +  +  V      +  V+AF++I  GCD  CT+C+VP+TRG E S
Sbjct: 196 NNQKAINVLLSFDETYADVMPVRLN---ENNVSAFVSIMRGCDNMCTYCIVPFTRGRERS 252

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG--------------LDGEKC----- 245
           R +  +++E + L D GV +ITLLGQNVN++R                  DG K      
Sbjct: 253 RPIDSILEEVKILSDQGVKQITLLGQNVNSYRDIKSKEYLSTFNEPTVVADGFKTVYKPK 312

Query: 246 ----TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
                FS LL  +SE+   +R+R+T+ HP+D  D ++    +   +  ++HLP+QSGS++
Sbjct: 313 IGGVRFSTLLDKVSEVNPEMRIRFTSPHPKDFPDDVLHLIKERKNICNFIHLPIQSGSNQ 372

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
           +L+ M R +T   Y ++++ IRS+ P+I +S+D I GF GET+ D   TM+++  I Y Q
Sbjct: 373 VLERMRRGYTREAYIKLVENIRSLIPNIVLSTDIITGFCGETEKDHEDTMEMIRLIQYHQ 432

Query: 362 AFSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
            + F YS R  T       + V + VK  R   +  + R      N++ + Q+  +LIE 
Sbjct: 433 MYFFPYSMREKTTAHRRYEDDVPQEVKMRRFQEVGAEFRRISKKLNESQINQVQVILIEG 492

Query: 421 HGKEKG-KLVGRSPWLQSVVLNSKNH--------------NIGDIIKVRITDVKISTLYG 465
             K     L GR+     V++ +++                 GD + V I D     L G
Sbjct: 493 FSKRSNEYLAGRNDGNIKVIIPAQDVPSSRNSNSSVSRVIKPGDYVVVHINDASSQVLKG 552


>gi|292670946|ref|ZP_06604372.1| MiaB family RNA modification enzyme [Selenomonas noxia ATCC 43541]
 gi|292647567|gb|EFF65539.1| MiaB family RNA modification enzyme [Selenomonas noxia ATCC 43541]
          Length = 442

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 140/450 (31%), Positives = 221/450 (49%), Gaps = 17/450 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC  N+ D+  M  +    G +  N   +AD++++NTC   E A E+  + + 
Sbjct: 2   KAGFISLGCAKNLVDTEVMLGIMREHGIDITNEPAEADILIVNTCAFIESAKEESITTVL 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            + + K S    G    ++VAGC+ Q  G+++L   P  N ++G   + R+ E++E    
Sbjct: 62  GMADYKES----GRCRSLIVAGCLGQRYGQQLLDEIPEANAIIGTGAWSRIMEVIEETLK 117

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G+R++ +    +D                  TA++ I EGCD  C FC +P  RG   SR
Sbjct: 118 GRRLLISG--KDDTIYDAKTPR--LRTTPNYTAYVKIAEGCDHRCAFCAIPLIRGSFRSR 173

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            +  VV EA  L   GV E+ L+ Q+ +A  G  L  EK     LL +L++IK +  +R 
Sbjct: 174 VMEDVVAEAEHLAAQGVRELVLIAQD-SANYGLDLY-EKPMLPALLRALTKIKDIAWIRV 231

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
             S+P+  SD LI+       ++ Y+ LP+Q   D +L+SMNR  T     ++I R+R  
Sbjct: 232 LYSYPKYFSDELIEVFATEPKVVKYVDLPLQHAHDAVLRSMNRPDTREGVEKLIKRLRER 291

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P +AI S FIVGFPGETD  ++A    V+   + +   F YS    TP + M ++V E 
Sbjct: 292 IPGVAIRSTFIVGFPGETDTHYQALRSFVEAQRFDKVGIFTYSEEEDTPAAKMAQKVPEE 351

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRS----PWLQS-VV 439
           V  ER   L     +     N +  G+ ++VLIE   +E +G  +GRS    P +   + 
Sbjct: 352 VMQERYHDLMSLQSKISEEINVSLEGKEVDVLIEGRDEEQEGISIGRSYREAPEVDGQIY 411

Query: 440 LNSK-NHNIGDIIKVRITDVKISTLYGELV 468
           + S     +GDI +VR+       + GE V
Sbjct: 412 IESDTESRVGDIARVRLLQGFTYDIVGEKV 441


>gi|289423896|ref|ZP_06425689.1| conserved hypothetical protein [Peptostreptococcus anaerobius
           653-L]
 gi|289155673|gb|EFD04345.1| conserved hypothetical protein [Peptostreptococcus anaerobius
           653-L]
          Length = 442

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 141/443 (31%), Positives = 235/443 (53%), Gaps = 16/443 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++    + GC++N Y++  M +MF  +GY  V S + AD+ V+NTC +   +  K   ++
Sbjct: 2   KKVAFYTLGCKVNQYETEAMLEMFEKKGYTNVGSEEYADVYVINTCTVTHMSDRKSRQYI 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R++       K+    ++ V GC +Q   EEIL     VN+V+G      + + +E   
Sbjct: 62  RRVK-------KKNPKSIIAVVGCYSQVSPEEIL-EIEDVNLVMGTNDRRTIVDRIEELD 113

Query: 145 FGKRVVDTD-YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
              ++   D      +FE + I       +    AF+ IQ+GCD++CT+C++PY RG   
Sbjct: 114 SNSKLSTVDDIMKVREFESIEISQNNGKTR----AFIKIQDGCDRYCTYCIIPYARGRIR 169

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR++ ++ +E   L +NG  E+ L G +V A  GK L  E     D++ ++++I G+ R+
Sbjct: 170 SRNIDEIREEIITLANNGYKEVVLTGIHV-ASYGKDLK-EDIGILDVIKAVNDIDGIERI 227

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R ++  P   +D  I     +D L+P+ HL +QSG+D  LK MNRR+TA EY++ +D +R
Sbjct: 228 RLSSVEPVLFTDEFIDEICKIDKLVPHFHLSLQSGTDSTLKRMNRRYTAAEYKRTVDTLR 287

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
               D+ +++D IVGFPGET++DF  T+  + +I       FKYSPR GTP ++M +QVD
Sbjct: 288 DRIKDVMLTTDVIVGFPGETNEDFSETLRFLKEIKLMHMHVFKYSPRKGTPAASMKDQVD 347

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
              K  R   L    ++      +  +G+ + VL E+  KE G   G S     + + S 
Sbjct: 348 PQAKQFRSDALLNLSKKNFKENTEKYIGRPLNVLFEEVDKE-GYYEGLSDNYIRIKVKSD 406

Query: 444 NHNIGDIIKVRITDVKISTLYGE 466
               G I++ +I D++     GE
Sbjct: 407 KDIRGQILEAKIVDIRDDYCIGE 429


>gi|320536571|ref|ZP_08036594.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Treponema phagedenis
           F0421]
 gi|320146584|gb|EFW38177.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Treponema phagedenis
           F0421]
          Length = 455

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 146/451 (32%), Positives = 246/451 (54%), Gaps = 17/451 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
            +F ++YGCQMNV +S  +E +   +G+E+    D  DL+++NTC +R  A  +V+  LG
Sbjct: 2   TYFFETYGCQMNVAESASVEQLLLKRGWEKAEKADVCDLLIINTCSVRITAETRVFGRLG 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
               LK  R        +++ GC+A+   ++I +  P ++ VVG     +   + +    
Sbjct: 62  LFSALKKKRAFS-----IILMGCMAERLHDKIKKDFPRLDYVVGMFERNQFTAIFKEIES 116

Query: 146 --GKRVVDTDYSVEDKFERLSIVDGGYNR---KRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
              K    +++S ED  E+             +    +F+ I  GC+ FCT+C+VPY RG
Sbjct: 117 KLNKTDYHSEFSGEDFLEKPVSGYHFAESSYIEGAFQSFIPIMNGCNNFCTYCIVPYVRG 176

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI--- 257
            EISRSL  ++ E  +L + GV EITLLGQNVN++RGK  +G+  TF +LL  ++ +   
Sbjct: 177 REISRSLEAILAEVEELSEKGVREITLLGQNVNSYRGKDFEGKLITFPELLRRVARVCEK 236

Query: 258 -KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
              +  +R+ +SHP+D SD LI    +   +   +HLPVQ GS+ +LK MNR +T   Y 
Sbjct: 237 KDSIRWIRFMSSHPKDFSDELITVIAEEPRVCKLIHLPVQHGSNAVLKRMNRSYTREHYL 296

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
            ++D++R+  PD A+S+D ++GFPGE+++DF  T+DL+ ++ +  AF + Y+PR GT   
Sbjct: 297 SLVDKLRTKVPDSALSTDILIGFPGESEEDFELTLDLMRQVQFDSAFMYHYNPREGTRAY 356

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWL 435
           +  +++ + V+  RL  +     +         V  I+ VL+E   +    +L G + + 
Sbjct: 357 DFPDRIPDAVRIARLQQVIDLQMKTSAEKMRNRVNHILHVLVESRSRNNPDELFGHTEFG 416

Query: 436 QSVVLNS--KNHNIGDIIKVRITDVKISTLY 464
           +  VL      ++IG  +KV+I  V+  T  
Sbjct: 417 EMAVLTGADPENSIGHFVKVQIQSVQGKTFR 447


>gi|302874325|ref|YP_003842958.1| RNA modification enzyme, MiaB family [Clostridium cellulovorans
           743B]
 gi|307689408|ref|ZP_07631854.1| RNA modification enzyme, MiaB family protein [Clostridium
           cellulovorans 743B]
 gi|302577182|gb|ADL51194.1| RNA modification enzyme, MiaB family [Clostridium cellulovorans
           743B]
          Length = 433

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 142/439 (32%), Positives = 244/439 (55%), Gaps = 16/439 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    + GC++N+Y+S  M + F S+GY+ V+  + A++ V+NTC +     +K   ++ 
Sbjct: 2   KVAFATLGCRVNIYESEAMTEKFKSEGYDVVDFDEKAEVYVINTCTVTNMGDKKSRQYIS 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           + +       K+  + +V V GC +Q   +E+      V+VV+G +    +   + RA  
Sbjct: 62  KAK-------KKNPEAVVAVVGCYSQTSPDEV-SAIEGVDVVLGTRNKGDIVYYVNRAMD 113

Query: 146 GKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            K   VV  D      FE L I D     +    AFL +Q+GC++FC++C++PY RG   
Sbjct: 114 TKEKFVVVKDVLRNKVFEELKIEDFEGKTR----AFLKVQDGCNRFCSYCLIPYARGAVC 169

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           S++   ++DE  KL DNG  EI L G ++ A  G  L+ E+ T  D++  + +I G+ R+
Sbjct: 170 SKNPETIIDEVNKLADNGFKEIILSGIHI-ASYGVDLE-ERKTLMDIIEEIHKINGIKRI 227

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R  +  PR  +D +I+    ++ + P+ HL +QSG D  LK MNR++TA EY   + ++R
Sbjct: 228 RIGSVEPRFFTDEVIEKMASMEKMCPHFHLSLQSGCDATLKRMNRKYTAEEYFNTVVKLR 287

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              P+++I++D IVGFPGET ++F  T + + ++  A+   FKYSPR GT  ++M + V 
Sbjct: 288 ERIPNVSITTDVIVGFPGETAEEFNETFNYLKELRVAKMHIFKYSPRKGTKAADMKDDVH 347

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
             +K ER   LQ+  RE + +F    +G+ +EVL+E+  K+  + +G +     V+++S 
Sbjct: 348 GTIKEERSKLLQELDRENEKNFIQDFIGEKLEVLVEEKLKDDNRYIGYTSNYIKVIIDST 407

Query: 444 NHNIGDIIKVRITDVKIST 462
              +G II VR+ + K   
Sbjct: 408 EDIVGKIITVRLIENKGDY 426


>gi|188990993|ref|YP_001903003.1| MiaB-family RNA modification enzyme, probable [Xanthomonas
           campestris pv. campestris str. B100]
 gi|167732753|emb|CAP50947.1| MiaB-family RNA modification enzyme, probable [Xanthomonas
           campestris pv. campestris]
          Length = 622

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 135/482 (28%), Positives = 219/482 (45%), Gaps = 44/482 (9%)

Query: 7   LIGVAHMVSQIVDQCIVPQ-----RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDD 61
           +IG+A    + V Q          +    S GC   + DS R+      +GY+ V S D 
Sbjct: 148 IIGLAQAPGRSVSQAPASMSQLNPKVGFVSLGCPKALVDSERILTQLRVEGYDIVPSYDA 207

Query: 62  ADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRS 121
           AD++V+NTC   + A  +    +G              +  V+V GC+ +   E+I    
Sbjct: 208 ADVVVVNTCGFIDSAVTESLDAIGEA---------MNANGKVIVTGCLGKR-PEQIREAY 257

Query: 122 PIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLT 181
           P V  V GPQ Y  + E +  A   +          D F  L + D G        A+L 
Sbjct: 258 PQVLAVSGPQDYQSVMEAVHAALPPR---------HDPFVDL-VPDYGIKLTPRHYAYLK 307

Query: 182 IQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD 241
           I EGC+  C+FC++P  RG   SR + +V+ EA +L+  GV E+ ++ Q+ +A  G  L 
Sbjct: 308 ISEGCNHRCSFCIIPSMRGDLASRPVDEVLREAERLVRGGVKELLVVSQDTSA-YGVDLK 366

Query: 242 GEKCTFSD---------LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLH 292
             +  + D         L   LSE+    RL Y   +P       + A G    L+PYL 
Sbjct: 367 YAERPWRDRMYQTRMKALCEGLSELGVWTRLHYVYPYPHVDDVIPLMAEG---KLLPYLD 423

Query: 293 LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352
           +P Q  S RILK M R     +  + + R +++ P+I + S FIVGFPGETD +F A ++
Sbjct: 424 IPFQHASPRILKLMKRPGAVEKTLERVQRWKAMCPEITVRSTFIVGFPGETDAEFEALLE 483

Query: 353 LVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQ 412
            +D+    +  +F YSP  G   + + + V E +K ERL     +  E   +  +A +G 
Sbjct: 484 FLDQAQLDRVGAFAYSPVEGASANALPDPVPEELKQERLARFMARQAEISAARLEAKIGT 543

Query: 413 IIEVLIE--KHGKEKGKLVGRSPWLQS-VVLNSKNHN---IGDIIKVRITDVKISTLYGE 466
           + + L++  +      +    +P +   V + +       +GD++ V ITD     L+G+
Sbjct: 544 VQQCLVDLIEDDIAVARSRADAPEIDGLVHIQNGGELKLKVGDLVDVEITDSDEHDLFGD 603

Query: 467 LV 468
            +
Sbjct: 604 AL 605


>gi|313891670|ref|ZP_07825277.1| tRNA methylthiotransferase YqeV [Dialister microaerophilus UPII
           345-E]
 gi|313119948|gb|EFR43133.1| tRNA methylthiotransferase YqeV [Dialister microaerophilus UPII
           345-E]
          Length = 445

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 137/452 (30%), Positives = 238/452 (52%), Gaps = 17/452 (3%)

Query: 19  DQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAE 78
           +QC   ++    + GC++N YDS  M  +F  +GY+ V   + AD+ ++NTC +      
Sbjct: 6   EQCKNTKKVSFITLGCKVNQYDSDAMRTLFIHRGYKPVEHPEVADVYIINTCSVTSIGDR 65

Query: 79  KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPE 138
           K    + +IR       +   D ++   GC AQ   EE+  +   V+V+VG Q   ++ +
Sbjct: 66  KSRQVIRKIR-------RNNPDAVIAATGCYAQVAPEEL-EKMGDVDVIVGHQDRNKIVD 117

Query: 139 LLERARFGKRVVDT--DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
            +E A   ++ V+   D     ++E L++   G  + R   AF+ +QEGCD +CTFC++P
Sbjct: 118 YIEEAEKSEKTVNAVKDIMSIREYENLTVDPEGEVKAR---AFVKVQEGCDNYCTFCIIP 174

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256
           Y RG   SR     VDE +KL++ G  E+ L G ++    GK L     + S L+  L +
Sbjct: 175 YARGRLKSRKQEDAVDEIKKLVEKGYREVVLTGIHLG-NYGKDL-RNGTSLSTLVSELLK 232

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           I  L+R+R  +    ++SD LI    +   +  +LHLP+QSGSD +LKSMNR +   +Y+
Sbjct: 233 IPNLLRIRLGSIESVELSDELINIIKNEKRVCHHLHLPLQSGSDAVLKSMNRHYRLKQYK 292

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
            +I  +R   P++A+++D IVGFPGET+++F+ T++ + ++ ++    F +S R GTP +
Sbjct: 293 DLIAMLREKIPNLALTTDLIVGFPGETEENFKETLNTLHELNFSAIHVFPFSKRTGTPAA 352

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQ 436
               Q+    K +R+  +Q+  ++    F    + +I+ VL E   K++    G S    
Sbjct: 353 MYPNQITNEEKKKRVHRVQELEKKISKEFRCEFLNKIVHVLAE--NKKEEYFEGFSDEYI 410

Query: 437 SVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            V +  +N   G +  V + +V    L G ++
Sbjct: 411 RVTIKGENVKRGHLYSVIVEEVTDEGLIGRVI 442


>gi|254239267|ref|ZP_04932590.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
 gi|126171198|gb|EAZ56709.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
          Length = 440

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 134/460 (29%), Positives = 214/460 (46%), Gaps = 34/460 (7%)

Query: 21  CIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKV 80
              P+  FV S GC   + DS R+      +GYE V + +DAD++V+NTC   + A  + 
Sbjct: 3   TPTPKVGFV-SLGCPKALVDSERILTQLRMEGYEVVPTYEDADVVVVNTCGFIDSAKAES 61

Query: 81  YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140
              +G              +  V+V GC+   E   I    P V  V GPQ Y ++   +
Sbjct: 62  LEVIGEA---------IAENGKVIVTGCMGVEEHA-IRDVHPSVLAVTGPQQYEQVVTAV 111

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
                           E       +   G        A+L I EGC+  C+FC++P  RG
Sbjct: 112 HEV--------VPPKTEHNPLVDLVPPQGVKLTPRHYAYLKISEGCNHSCSFCIIPSMRG 163

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLY 252
             +SR +  V+ EA +L+  GV E+ ++ Q+ +A+      +    +G+  K    +L  
Sbjct: 164 KLVSRPVGDVLSEAERLVKAGVKELLVISQDTSAYGVDLKYKTDFWNGQPVKTRMKELCE 223

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
           +LS +   VRL Y   +P       + A G    L+PYL +P Q  S ++LK+M R    
Sbjct: 224 ALSSMGVWVRLHYVYPYPNVDDVIPLMAAG---KLLPYLDIPFQHASPKVLKAMKRPAFE 280

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
            +    I + R + P++ I S FIVGFPGET++DF+  +D + +    +   F+YSP  G
Sbjct: 281 DKTLARIKQWREICPELTIRSTFIVGFPGETEEDFQYLLDWLTEAQLDRVGCFQYSPVEG 340

Query: 373 TPGSNM-LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLV 429
            P + + LE V + VK +R        +    +     VG+ IEVLI++  ++   G+  
Sbjct: 341 APANELGLEPVPDEVKQDRWERFMAHQQAISAARLQFKVGKEIEVLIDEVDEQGAVGRSW 400

Query: 430 GRSPWLQS-VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
             +P +   V ++S     GD ++VRITD     L+ ELV
Sbjct: 401 ADAPEIDGNVFVDSDELKPGDKVRVRITDADEYDLWAELV 440


>gi|317132913|ref|YP_004092227.1| MiaB-like tRNA modifying enzyme YliG [Ethanoligenens harbinense
           YUAN-3]
 gi|315470892|gb|ADU27496.1| MiaB-like tRNA modifying enzyme YliG [Ethanoligenens harbinense
           YUAN-3]
          Length = 451

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 131/451 (29%), Positives = 217/451 (48%), Gaps = 16/451 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
            P R  + S GC  N  D+  M      +G+      D AD++++NTC   E A ++   
Sbjct: 4   TPIRVGMISLGCPKNQVDAEVMLAKLTGEGFTLTPHADAADVVIVNTCGFIEDAKKESIE 63

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +  +  LK    KEG    +VV GC+++   +E+ +  P VN ++       + E +  
Sbjct: 64  NILEMAQLK----KEGAIRGLVVTGCLSERYFKEMRQEFPEVNCILQVGRAGDIAEAVRA 119

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           A  G  +   D+S   + E L+             ++L I EGCD  CT+C++P  RG  
Sbjct: 120 AADGGTL---DFS--GRPESLAAGGTRVLTTLPFYSYLKIAEGCDNHCTYCIIPKLRGRY 174

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR L  +V EA +L   GV E+TL+ Q+     G  L G K    +LL     I GL  
Sbjct: 175 RSRPLDDLVREAEQLAARGVRELTLVAQDTT-RYGTDLSGGKRMLPELLRRFCRIDGLHW 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R    +P  + D LI      + ++PYL +P+Q  S R++++MNRR +  E   ++ ++
Sbjct: 234 VRLLYCYPEALDDELIDTIASEEKVVPYLDMPIQHVSPRVVRAMNRRMSKAEITALVCKL 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+  PD+ + +  IVGFPGET+++F      V +  + +  +F YS   GTP + +  Q+
Sbjct: 294 RARIPDVTLRTTLIVGFPGETEEEFAELAAFVRETRFERLGAFAYSQEEGTPAAELPGQI 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSV 438
           DE+VK  R   + ++      + N   +G  +EVL+E + +  G   GRS    P +   
Sbjct: 354 DEDVKKRRQEQIMEEQMLVADANNQRRLGSTVEVLVEGYDRYAGCWFGRSAAEAPEIDGK 413

Query: 439 VL--NSKNHNIGDIIKVRITDVKISTLYGEL 467
           +   + K +  G  + V + +V    L G L
Sbjct: 414 IFIRSQKTNRPGTFVSVHLDEVCGDDLIGSL 444


>gi|307244373|ref|ZP_07526486.1| ribosomal protein S12 methylthiotransferase RimO
           [Peptostreptococcus stomatis DSM 17678]
 gi|306492274|gb|EFM64314.1| ribosomal protein S12 methylthiotransferase RimO
           [Peptostreptococcus stomatis DSM 17678]
          Length = 440

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 128/446 (28%), Positives = 214/446 (47%), Gaps = 18/446 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +  ++S GC  N+ D+  M  +    G++ V   +DAD++++NTC   E A ++    + 
Sbjct: 2   KIALESLGCSKNLVDAEIMLGLLNKNGHQLVGDYNDADIVIVNTCGFIESAKQESIDSIV 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           +  NLKN     G    ++V+GC+AQ   +E++   P ++ +VG  +Y  + ++++    
Sbjct: 62  QYANLKNE----GSLSYLLVSGCLAQRYPDELVEEIPEIDAIVGTGSYQNITDVVD---- 113

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G    D    +ED     +     Y       A+L I EGCD  CT+C++P  RG   SR
Sbjct: 114 GLTERDGIRLIEDINFTFNEDLPRYVSTPDHLAYLKIGEGCDNHCTYCIIPKLRGKYRSR 173

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            L  +++EA+KL + GV E+ ++ Q+  +  G+ + G+      L          +R  Y
Sbjct: 174 KLENLLEEAKKLKEAGVKELVVIAQDT-SVYGRDIYGKPDLAGLLEGLALLGFDWIRFMY 232

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
           +      +S  ++      D +  Y  +P+Q  SDRILK MNR+ +  E +  +D IRS 
Sbjct: 233 SYPEG--ISQEIVDVVAKYDNICSYFDIPMQHASDRILKLMNRKTSRQELKDKVDMIRSR 290

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            PD  I + FIVGFPGETD+DF   +D V ++   +  +F YS    TP   +   + + 
Sbjct: 291 VPDATIRTTFIVGFPGETDEDFEDLIDFVKEMKLDRMGAFTYSREEDTPADRLDGHLSQG 350

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVLN 441
           VK ERL  L    +      N   +G+  +VLIE    +    +GR+      + SV+  
Sbjct: 351 VKEERLQRLMMVQQAISEELNRKKIGKTYKVLIEDQV-DDNLYIGRTQCDAEDIDSVIYV 409

Query: 442 SKN--HNIGDIIKVRITDVKISTLYG 465
                  IGD + V + +     L G
Sbjct: 410 DSRQSLEIGDFVNVVVKEAFEYDLKG 435


>gi|149278722|ref|ZP_01884858.1| 2-methylthioadenine synthetase [Pedobacter sp. BAL39]
 gi|149230717|gb|EDM36100.1| 2-methylthioadenine synthetase [Pedobacter sp. BAL39]
          Length = 444

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 121/468 (25%), Positives = 222/468 (47%), Gaps = 37/468 (7%)

Query: 13  MVSQIVDQCIVPQR--FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDA---DLIVL 67
           M ++ V + I  ++    V + GC  N+YDS  +         + V+  D     D++V+
Sbjct: 1   MNTKTVSKIIPVKKPKINVITLGCSKNLYDSEVLMGQLRGNSMDVVHEADKMGKDDIVVI 60

Query: 68  NTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVV 127
           NTC   + A ++    + +   LK+     G    V+V GC+++    E+      V+  
Sbjct: 61  NTCGFIDNAKQESIDTILQYSQLKDE----GKVGKVIVTGCLSERYKPELESEITNVDAF 116

Query: 128 VGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCD 187
            G      +             +  +Y  E   ERL      +       A+  I EGC+
Sbjct: 117 FGTNDLNNIL----------HSLGANYKHELIGERLLTTPSHF-------AYFKIAEGCN 159

Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTF 247
           + C+FC +P  RG  +SR + ++V+EA+ L  NG  E+ L+ Q++  + G  + G++   
Sbjct: 160 RPCSFCAIPLMRGKHVSRDMQELVNEAKILAANGTKELILIAQDLT-YYGLDIYGKR-NL 217

Query: 248 SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307
            +LL  LS++ G+  +R   ++P      ++ A  + D +  YL +P+Q  +D +LKSM 
Sbjct: 218 DELLRRLSDVNGIEWIRLQYAYPSGFPMEILDAMNERDNICKYLDMPLQHITDNMLKSMR 277

Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           R  T  +   I+++IR   P+IA+ +  I G+PGET+ DF   +  V+   + +   F Y
Sbjct: 278 RGITKQKTIDIVNQIRDKVPNIAMRTTLICGYPGETEQDFEEMLSWVEDTRFDRLGCFTY 337

Query: 368 SPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK 427
           S    T   N+++ V + VK ER+  + +  +      N   VG+  +VL+++  KE   
Sbjct: 338 SHEEKTHAHNLVDDVPDEVKQERVDAIMELQQGISFDINQEKVGKTYKVLVDR--KEGDF 395

Query: 428 LVGRS----PWLQS-VVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468
            +GR+    P + + V++++       G  + VRI   +   LYG++V
Sbjct: 396 FIGRTEFDSPEVDNEVLIDAATGYAANGSFVNVRIDRAEDFDLYGQIV 443


>gi|223040820|ref|ZP_03611086.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Campylobacter rectus
           RM3267]
 gi|222877919|gb|EEF13034.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Campylobacter rectus
           RM3267]
          Length = 436

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 156/451 (34%), Positives = 246/451 (54%), Gaps = 20/451 (4%)

Query: 21  CIVPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEK 79
               ++ F+++ GC MNV DS  +       + YE   ++ DADLI++NTC +REK   K
Sbjct: 2   SAAQKKLFIQTLGCAMNVRDSEHIIAELSQKEDYELTGNIADADLILINTCSVREKPVHK 61

Query: 80  VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL 139
           ++S +G     K +  K      + V GC A   G+EI +R+P V+ V+G +   ++   
Sbjct: 62  LFSEVGAFEKAKKNGAK------IGVCGCTASHLGDEIFKRAPYVDFVLGARNVSKISTA 115

Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           ++  +F    ++ D S     E          R     + + I  GCDK CT+C+VP+TR
Sbjct: 116 VKTPKFISTDINHDESEYAFGEF---------RGSPYKSHINISIGCDKKCTYCIVPHTR 166

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG--EKCTFSDLLYSLSEI 257
           G EIS   + ++ E +K  ++G  EI LLGQNVN   GK   G  EK  FSDLL  +SEI
Sbjct: 167 GDEISIPANLILREVKKAAESGAKEIFLLGQNVN-NYGKRFSGAHEKIDFSDLLVKISEI 225

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
           KG+ R+R+T+ HP  M D  ++       +   +H+P+QSG+ ++L+ M R +T   +  
Sbjct: 226 KGVERIRFTSPHPLHMDDKFLEIFSQNPKICKSMHMPLQSGNTKVLREMKRGYTKEWFLD 285

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
              ++R++ P+++IS+D IV FPGE+D++F  TMD+++K+ + Q FSFKYSPR  T  + 
Sbjct: 286 RAAKLRAMCPEVSISTDIIVAFPGESDEEFEDTMDVLEKVRFEQIFSFKYSPRPLTKAAE 345

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQS 437
              Q+ +++ + RL  LQ +  E       A   +I +V  E+  +  G + GRS     
Sbjct: 346 FTNQIPDSLASARLTRLQSRHNEILDEIVAAQKSKIFDVYFEEL-RANGGVAGRSFNNFL 404

Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           V +      +G  +KVR+ D K   LYGELV
Sbjct: 405 VQVAGSEELLGKTLKVRVNDPKRMVLYGELV 435


>gi|296390731|ref|ZP_06880206.1| ribosomal protein S12 methylthiotransferase [Pseudomonas aeruginosa
           PAb1]
          Length = 440

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 134/460 (29%), Positives = 214/460 (46%), Gaps = 34/460 (7%)

Query: 21  CIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKV 80
              P+  FV S GC   + DS R+      +GYE V + +DAD++V+NTC   + A  + 
Sbjct: 3   TPTPKVGFV-SLGCPKALVDSERILTQLRMEGYEVVPTYEDADVVVVNTCGFIDSAKAES 61

Query: 81  YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140
              +G              +  V+V GC+   E   I    P V  V GPQ Y ++   +
Sbjct: 62  LEVIGEA---------IAENGKVIVTGCMGVEEHA-IRDVHPSVLAVTGPQQYEQVVTAV 111

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
                           E       +   G        A+L I EGC+  C+FC++P  RG
Sbjct: 112 HEV--------VPPKTEHNPLVDLVPPQGVKLTPRHYAYLKISEGCNHSCSFCIIPSMRG 163

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLY 252
             +SR +  V+ EA +L+  GV E+ ++ Q+ +A+      +    +G+  K    +L  
Sbjct: 164 KLVSRPVGDVLSEAERLVKAGVKELLVISQDTSAYGVDLKYKTDFWNGQPVKTRMKELCE 223

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
           +LS +   VRL Y   +P       + A G    L+PYL +P Q  S ++LK+M R    
Sbjct: 224 ALSSMGVWVRLHYVYPYPNVDDVIPLMAGG---KLLPYLDIPFQHASPKVLKAMKRPAFE 280

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
            +    I + R + P++ I S FIVGFPGET++DF+  +D + +    +   F+YSP  G
Sbjct: 281 DKTLARIKQWREICPELTIRSTFIVGFPGETEEDFQYLLDWLTEAQLDRVGCFQYSPVEG 340

Query: 373 TPGSNM-LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLV 429
            P + + LE V + VK +R        +    +     VG+ IEVLI++  ++   G+  
Sbjct: 341 APANELGLEPVPDEVKQDRWERFMAHQQAISAARLQLKVGKEIEVLIDEVDEQGAVGRSW 400

Query: 430 GRSPWLQS-VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
             +P +   V ++S     GD ++VRITD     L+ ELV
Sbjct: 401 ADAPEIDGNVFVDSDELKPGDKVRVRITDADEYDLWAELV 440


>gi|229829112|ref|ZP_04455181.1| hypothetical protein GCWU000342_01197 [Shuttleworthia satelles DSM
           14600]
 gi|229792275|gb|EEP28389.1| hypothetical protein GCWU000342_01197 [Shuttleworthia satelles DSM
           14600]
          Length = 449

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 128/452 (28%), Positives = 223/452 (49%), Gaps = 16/452 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           +  +    S GC  N+ DS  M       G+   +S ++AD+I++NTC   E A E+   
Sbjct: 1   MSLKILFVSLGCDKNLVDSEHMLSRLHRDGFSMTDSEEEADIIIVNTCAFIESAKEESIE 60

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            + ++   K      G    ++  GC++Q    +I  + P V+ V+G  +Y  +  +L  
Sbjct: 61  TILQMAAYKEK----GRLKALLATGCLSQRYARQIREQIPEVDGVLGTNSYDDIVPVLHA 116

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
              G      D   +   +  +   G      G  A+L I EGCDK C++C++P  RG  
Sbjct: 117 VLDGLPQTRIDDLDDLPDDEEA---GRLLTTAGHYAYLKIAEGCDKHCSYCIIPKLRGSY 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            S  + +++ EAR+L+  GV E+ L+ Q      G  L G K    +LL  L++I+GL  
Sbjct: 174 RSVPMIKLIKEARELVSQGVRELILVAQETT-LYGSDLYGRKM-LPELLDKLNDIEGLRW 231

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R   ++P ++   LI+A    D ++ Y+ +P+Q G D IL+ M RR    + R+ +  +
Sbjct: 232 IRILYAYPEEIDQELIQAMVRNDKVLHYIDMPIQHGDDEILRRMGRRTNQDDIRKKVAML 291

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R   PDIAI +  I GFPGETD   +  +D +D++ + +  +F YS    TP ++   Q+
Sbjct: 292 REAMPDIAIRTTVICGFPGETDQMHQNLLDFIDEMQFDRLGAFAYSQEEDTPAASFAGQL 351

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSV 438
           D+ VK  RL  + +K ++   + N++ VG  +E +IE    ++   VGR+    P +   
Sbjct: 352 DQKVKEARLARVMEKQQKINFAMNESLVGSDLEAIIEGKIADEPAYVGRTYRDAPDVDGY 411

Query: 439 VLNSKNHNI---GDIIKVRITDVKISTLYGEL 467
           +  S  +++   GD++   ++      L GE 
Sbjct: 412 IFVSGENDVFHTGDLVMTHVSGAYEYDLIGEP 443


>gi|187476722|ref|YP_784746.1| ribosomal protein S12 methylthiotransferase [Bordetella avium 197N]
 gi|115421308|emb|CAJ47813.1| putative radical SAM protein [Bordetella avium 197N]
          Length = 442

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 128/461 (27%), Positives = 214/461 (46%), Gaps = 33/461 (7%)

Query: 18  VDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA 77
           V +     R    S GC   + DS R+     ++GYE     +DAD++V+NTC   + A 
Sbjct: 1   VSKTSRAPRVGFVSLGCPKALVDSERILTQLRTEGYEVTPEYNDADVVVVNTCGFIDSAK 60

Query: 78  EKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLP 137
            +    +G                 V+V GC+   E   I    P V  V GPQ Y ++ 
Sbjct: 61  AESLDAIGEALAENGK---------VIVTGCMGVEE-SAIRSVHPSVLAVTGPQQYEQVV 110

Query: 138 ELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197
           + +  A   ++  +    +        +   G        A+L I EGC+  C+FC++P 
Sbjct: 111 QAVHSAAPPRQDHNPYVDL--------VPPQGVKLTPRHYAYLKISEGCNHRCSFCIIPS 162

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSD 249
            RG  +SR +  V++EA +L+  GV E+ ++ Q+ +A+      R    +G   K   ++
Sbjct: 163 MRGNLVSRPVGDVLNEAERLVKAGVKELLVISQDTSAYGVDLKYRSGFWNGRPVKTRMTE 222

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
           L  +LSE+    RL Y   +P       + A G    ++PYL +P Q  S RILK+M R 
Sbjct: 223 LCDALSELGVWTRLHYVYPYPSVDDIIPLMAEG---KVLPYLDIPFQHASPRILKAMKRP 279

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369
               +    I + R+  PD+ I S FIVGFPGET++DF+  +D + +    +   F+YSP
Sbjct: 280 AFEDKTLARIHQWRAACPDLTIRSTFIVGFPGETEEDFQYLLDWMSEAQLDRVGCFQYSP 339

Query: 370 RLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GK 427
             G P + +   V + VK ER     +  +    +     +G+ I+VLI++  ++   G+
Sbjct: 340 VEGAPANALAGIVPDEVKQERWERFMEHQQAISAARLQTRIGREIDVLIDEVDEDGAVGR 399

Query: 428 LVGRSPWLQSVVLNSKN--HNIGDIIKVRITDVKISTLYGE 466
               +P +   V  S +     GD+++VR+TD     L+ +
Sbjct: 400 SSADAPEIDGCVYVSSDTPVKPGDMVRVRVTDADEYDLWAD 440


>gi|317128304|ref|YP_004094586.1| RNA modification enzyme, MiaB family [Bacillus cellulosilyticus DSM
           2522]
 gi|315473252|gb|ADU29855.1| RNA modification enzyme, MiaB family [Bacillus cellulosilyticus DSM
           2522]
          Length = 448

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 131/452 (28%), Positives = 242/452 (53%), Gaps = 20/452 (4%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           +        + GC++N Y++  +  +F  +GYE+ +    +D+ V+NTC +     +K  
Sbjct: 1   MTMPTVAFHTLGCKVNHYETEAIWQLFQQEGYEKTDFNHSSDVYVINTCTVTNTGDKKSR 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             + R        I++  + +V V GC AQ    EI+   P V++VVG Q  ++L   +E
Sbjct: 61  QVIRRA-------IRKNPEAVVCVTGCYAQTSPAEIMA-IPGVDIVVGTQDRHKLIPYIE 112

Query: 142 RARFGKRVVDTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           + +  +  ++   ++     +E L +            A L IQEGC+ FCTFC++P+ R
Sbjct: 113 QYQKEREPINGVGNIMKARVYEELDVP----AFTDRTRASLKIQEGCNNFCTFCIIPWAR 168

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G+  SR   +V+ +A +L+ +G  EI L G +     G G D +  + ++LL  L ++ G
Sbjct: 169 GLMRSRKPEEVIKQAEQLVASGYKEIVLTGIHTG---GYGEDMKDYSLANLLLDLEKVDG 225

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           L R+R ++     ++D +I+     + ++ +LH+P+QSGS+ +LK M R++T   + + +
Sbjct: 226 LKRIRISSIEASQITDEVIQVIDQSEKVVNHLHVPLQSGSNSVLKRMRRKYTTAFFYERV 285

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
           ++++   P +A++SD IVGFPGET+++F  T + + K+G+++   F YS R GTP + M 
Sbjct: 286 EKLKKALPGLAVTSDVIVGFPGETEEEFNETFEFIKKVGFSELHVFPYSKRTGTPAARMD 345

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK---GKLVGRSPWLQ 436
           +QVD++VK ER+  L     +    +  +  G+++E++ E+  KE    G  VG +    
Sbjct: 346 DQVDDDVKNERVHKLIALSTQLAKEYASSYEGEVLEMIPEELDKENPDAGLYVGYTDNYL 405

Query: 437 SVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            V + +    +G+I+KV+I         G  V
Sbjct: 406 KVRVKADESIVGEIVKVKIDKAGYPFNKGSFV 437


>gi|217967846|ref|YP_002353352.1| MiaB-like tRNA modifying enzyme YliG [Dictyoglomus turgidum DSM
           6724]
 gi|217336945|gb|ACK42738.1| MiaB-like tRNA modifying enzyme YliG [Dictyoglomus turgidum DSM
           6724]
          Length = 440

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 125/452 (27%), Positives = 217/452 (48%), Gaps = 21/452 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++  V   GC  N  D+  +     + GY      ++ADLI++NTC   + A ++    +
Sbjct: 2   KKAGVIHLGCSKNQVDTEVLMGFLKNLGYTFTPHSEEADLILVNTCAFIKPAWQEAEENI 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             +   K    K   +L +VV GC  +   EE+  + P V++ +GP  Y +   L+    
Sbjct: 62  SLLEKYK----KINENLKIVVVGCYVERFKEELENKYPFVDLFIGPGEYEKFVSLI--TS 115

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            GKR + +  +    +                  ++ I EGC+ FC++C +P+ RG   S
Sbjct: 116 NGKRGIYSSPASSFIYNHKMPRILISP---NFWVYVKIAEGCNNFCSYCTIPFIRGRLRS 172

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           RS+  +V E    I  GV E+ L+ Q+     G+ L G + +  DLL ++ +I+G   +R
Sbjct: 173 RSIEDIVKEIEIWIGKGVKEVNLIAQDTT-RYGEDLYG-RPSLVDLLRNIEKIRGDFYVR 230

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
              S+P  +S+ LI+A  + + ++PY  +P+Q  SD ILK MNR +   +  ++  RI+ 
Sbjct: 231 ILYSYPSRISEKLIEAIKNSEKVVPYFDIPIQHVSDVILKRMNRSYKKDDIIKLWHRIKE 290

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
              +  I +  +VGFPGET+++F   +D + K  + +  +F Y    GT       QVDE
Sbjct: 291 NFENAVIRTTVMVGFPGETEENFEELIDFIKKYPFDRLGAFIYYNENGTISKGFENQVDE 350

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVL 440
           + K  R   L +  ++     N   +G+  +V+IE   ++    VGRS    P +  +++
Sbjct: 351 DEKLRRYEILMETQKKISKKLNAKLLGKEFDVIIE--DEKGKYFVGRSWREAPEVDGLIM 408

Query: 441 ----NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 K   IG  ++V+I   +   L GELV
Sbjct: 409 IPKEKEKTLKIGSKVRVKIKKYRSYDLLGELV 440


>gi|154249151|ref|YP_001409976.1| (dimethylallyl)adenosine tRNA methylthiotransferase
           [Fervidobacterium nodosum Rt17-B1]
 gi|229890533|sp|A7HK86|MIAB_FERNB RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|154153087|gb|ABS60319.1| RNA modification enzyme, MiaB family [Fervidobacterium nodosum
           Rt17-B1]
          Length = 430

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 153/443 (34%), Positives = 244/443 (55%), Gaps = 20/443 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +  + +YGCQMN  DS  ++ +   +G E  +  +DAD+++LNTC +R+K+ EKVYS +G
Sbjct: 2   KVHIFTYGCQMNENDSEIVKQLLKDEGIELTDDENDADVVILNTCAVRKKSEEKVYSHIG 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           ++R              + + GCVA+ E E + +R   V+ V+G +   ++P+ +  A+ 
Sbjct: 62  KLRKKGKK---------IGIMGCVAEKEKENLFKR--GVSFVIGTRALTKVPDAVLNAKN 110

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G + +  + ++++             R     A++TI  GCD+FCT+C+VPYTRG E SR
Sbjct: 111 GNKQIYLEDTLDEIEYH-----KVETRSSNHHAWVTIIHGCDRFCTYCIVPYTRGREKSR 165

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            + +V+ E   L   G  E T LGQNV+A+     DG   + + LL   S+I  + RL +
Sbjct: 166 PIDEVLKEVESLSQRGYKEFTFLGQNVDAYGKDLRDG--TSLAKLLKLASQIDNVKRLWF 223

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
            TS+P D S  + K   + + +   +HLPVQ GSD+ILK+MNRR+T  EY  +I+ IR +
Sbjct: 224 LTSYPTDFSLEIPKVMLESEKVARSIHLPVQHGSDKILKAMNRRYTRQEYIDLINEIRKI 283

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN-MLEQVDE 384
            PD +ISSD IVGFPGE D+DF AT++LV  + + +     YSPR GT     + + V  
Sbjct: 284 VPDASISSDIIVGFPGENDEDFEATVELVKLLKFERLNLAVYSPREGTVAWKYLKDDVPY 343

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
            VK  R+  L    +      N + +G+ +EV++E   K  G   GR    + +   +  
Sbjct: 344 QVKVRRMSYLLNLQKTINKELNKSYLGKEVEVIVEAQAK-NGLFYGRDIRNKIISFEANP 402

Query: 445 HNIGDIIKVRITDVKISTLYGEL 467
            +IG  + V++  +    LYGE+
Sbjct: 403 ESIGKNVIVKVNKISAGPLYGEI 425


>gi|323705384|ref|ZP_08116959.1| MiaB-like tRNA modifying enzyme YliG [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323535286|gb|EGB25062.1| MiaB-like tRNA modifying enzyme YliG [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 437

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 121/448 (27%), Positives = 225/448 (50%), Gaps = 20/448 (4%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
             + S GC  N+ DS +M  +   +G+  VN+ +DAD++++NTC   E A  +   ++  
Sbjct: 4   VGIISLGCAKNIVDSEKMLGIIKKKGFNIVNNENDADVLIINTCGFIESAKRESIDYILE 63

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           +      ++K+     ++ +GC+++   +E+L   P ++ V+G   + ++ +++E    G
Sbjct: 64  M-----GKLKKKRLKSLIASGCLSERYKDELLESLPELDAVIGTGDFLKIADVIEDTLKG 118

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           KR+++  ++ E   +    +           A+L I EGC+  C+FC++P  RG   S  
Sbjct: 119 KRILEYGHANELDDKDSPRI----LSTPKHYAYLKISEGCNNKCSFCIIPKLRGRYRSVK 174

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
           +  +++EA+ L +NGV E+ L+ Q+     G  +   K     LL  L+ I G+  +R  
Sbjct: 175 IEDLLNEAKMLAENGVKELILIAQDTT-KYGIDIY-NKYMLPTLLRKLANINGIKWIRIL 232

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
            ++P  ++D LI      + ++ Y+ +P+Q  +D +L+ M R  T  +    I++++S  
Sbjct: 233 YAYPDSITDELIDEIKTNEKVLKYIDIPLQHSNDEVLRRMKRNTTRKKIEDTIEKLKS-I 291

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           P + I + FIVGFPGETDD+F      + +  + +   F YS    T   +M  Q+ E +
Sbjct: 292 PGMIIRTTFIVGFPGETDDEFDDLKKFIVEKKFNKLGVFTYSREEDTEAYDMQNQISEQI 351

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVL-- 440
           K +R   +    +   + +N   +G   EV++E    + G   GRS    P +  +    
Sbjct: 352 KQKRYNEIMLLQKNISLEYNKRLIGSEFEVVVEGQ--KDGLYYGRSYIDAPDIDGITFFK 409

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
           ++K  NIGD  KV+IT      L GEL+
Sbjct: 410 SNKKLNIGDFAKVKITKAFDYDLMGELL 437


>gi|169832193|ref|YP_001718175.1| MiaB-like tRNA modifying protein [Candidatus Desulforudis
           audaxviator MP104C]
 gi|169639037|gb|ACA60543.1| MiaB-like tRNA modifying enzyme [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 450

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 141/448 (31%), Positives = 227/448 (50%), Gaps = 20/448 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++    + GC++N  ++  +  +F  +GY+ +   + AD+ V+NTC +  +   K    +
Sbjct: 2   KKVAFYTLGCKVNQAETQGLAALFRDRGYKVIPFEETADVYVVNTCTVTREGDRKSRQVV 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R        ++   + LVVV GC AQ   EE     P V++V+G     R+ +L+E+A 
Sbjct: 62  RRA-------VRANPEALVVVTGCYAQVAPEE-AGAIPGVSLVIGTSGRERIVDLVEQAA 113

Query: 145 F------GKRVVDTDYSVEDKFERLSIVDGGYNRKRG-VTAFLTIQEGCDKFCTFCVVPY 197
                   K+      +V D  +     D       G   AF+ +QEGC  FCT+C+VPY
Sbjct: 114 ARCPVPAEKKGPGPFLAVGDIEQAREFEDLPGTADPGRTRAFIKVQEGCRDFCTYCIVPY 173

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257
            RG   SR   +V++ AR L+D G  E+ L G N+ A  G+ L  E      L+  L  I
Sbjct: 174 ARGPLRSRPPERVLELARGLVDRGYSELVLTGVNLGA-YGRDLGTE--NLPGLVRRLVRI 230

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
            GL RLR ++  P +++  L++A  +  V  P+ H+P+QSGSD +L  M RR++  E+  
Sbjct: 231 PGLARLRLSSVEPNEITRELVEAVAENPVCAPHFHIPLQSGSDSVLSRMGRRYSTGEFTG 290

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
           ++D +R+  P++A+++D +VGFPGET  + R +++ V +IG+A    F YSPR GTP ++
Sbjct: 291 LVDMVRARVPEVAVTADVMVGFPGETAAEHRESLEYVRRIGFAGLHVFVYSPRRGTPAAS 350

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQS 437
             + V   VK ER   +    RE +  F     G+ +EVL+E      G   G +P    
Sbjct: 351 FPDPVPYRVKKERSREMLALGRELRDRFASRYRGRTVEVLVESVS--GGVASGYTPNYLR 408

Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYG 465
           V   +     G I+KV     +   L G
Sbjct: 409 VFFKNGPELAGRIVKVYADGAEQGNLRG 436


>gi|317047503|ref|YP_004115151.1| MiaB-like tRNA modifying enzyme YliG [Pantoea sp. At-9b]
 gi|316949120|gb|ADU68595.1| MiaB-like tRNA modifying enzyme YliG [Pantoea sp. At-9b]
          Length = 441

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 124/457 (27%), Positives = 214/457 (46%), Gaps = 34/457 (7%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P R    S GC  N+ DS R+     ++GY+ V   DDA+++++NTC   + A ++    
Sbjct: 7   PPRVGFVSLGCPKNLVDSERILTELRTEGYDVVPRYDDAEIVIVNTCGFIDSAVQESLEA 66

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G              +  V+V GC+  A+ ++I    P V  + GP +Y ++   +   
Sbjct: 67  IGEA---------LNENGKVIVTGCLG-AKVDQIREVHPKVLEITGPHSYEQVLSHVHHY 116

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
                        E       +   G        A+L I EGC+  CTFC++P  RG   
Sbjct: 117 ---------VPKPEHNPFLSLVPQQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGDLD 167

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNA------WRGKGLDGE--KCTFSDLLYSLS 255
           SR +  V+DEA++L++ GV E+ ++ Q+ +A       R    +G   K +   L   L+
Sbjct: 168 SRPIGAVLDEAKRLVEAGVKELLVISQDTSAYGVDVKHRTGFWNGSPVKTSMVSLCEQLA 227

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
           ++   VRL Y   +P       + A G    ++PYL +P+Q  S RILK M R       
Sbjct: 228 KLGVWVRLHYVYPYPHVDDVIPLMAEG---KILPYLDIPLQHASPRILKLMKRPGAVERT 284

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
            + I R R + P++ + S FIVGFPGET++DF+  +D + +    +   F+YSP  G   
Sbjct: 285 LERIKRWREICPELTLRSTFIVGFPGETEEDFQMLLDFLKEARLDRVGCFQYSPVEGATA 344

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSP 433
           + + + V ++VK  R     +  ++         +G+ I V+I++  +E   G+ +  +P
Sbjct: 345 NQLPDPVPDDVKQARFERFMQLQQQISAERLQEKIGREILVIIDEVDEEGAVGRSMADAP 404

Query: 434 WLQS-VVLNSKN-HNIGDIIKVRITDVKISTLYGELV 468
            +   V LN      +GD+++V++       L+G  V
Sbjct: 405 EIDGAVYLNGDRQVKVGDVVRVKVDHADEYDLWGTRV 441


>gi|260913493|ref|ZP_05919971.1| MiaB family RNA modification enzyme [Pasteurella dagmatis ATCC
           43325]
 gi|260632433|gb|EEX50606.1| MiaB family RNA modification enzyme [Pasteurella dagmatis ATCC
           43325]
          Length = 444

 Score =  378 bits (972), Expect = e-103,   Method: Composition-based stats.
 Identities = 134/463 (28%), Positives = 218/463 (47%), Gaps = 41/463 (8%)

Query: 21  CIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKV 80
              P   F+ S GC  N+ DS R+     S GY  + S ++ADL+++NTC   + A ++ 
Sbjct: 3   SSAPNIGFI-SLGCPKNLVDSERILTELRSDGYNIIPSYENADLVIVNTCGFIDSAVQES 61

Query: 81  YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140
              +G                 V+V GC+  A+ + I    P V  V GP +Y  +   +
Sbjct: 62  LEAIGEALEENGK---------VIVTGCLG-AKEDRIREVHPKVLEVTGPHSYEAVMTQV 111

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
            +              E       +   G        A+L I EGCD  CTFC++P  RG
Sbjct: 112 HKY---------VPKPEYNPYTALVPKQGVKLTPKHYAYLKISEGCDHRCTFCIIPSMRG 162

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW----------RGKGLDGE--KCTFS 248
              SRS++QV+DEA++L+D GV E+ ++ Q+ +A+          +    +G   K    
Sbjct: 163 DLDSRSITQVLDEAKRLVDAGVKELLIVSQDTSAYALDQSKEVQNKTVFWNGMPIKNNLM 222

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
            L   L ++   VRL Y   +P       + A G    L+PYL +P+Q  S ++LK+M R
Sbjct: 223 SLCEQLGKLGVWVRLHYVYPYPHVDDLIPLMAEG---KLLPYLDIPLQHASPKVLKAMKR 279

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
             +     + I + R + P++ + S FIVGFPGET++DF+  +D + +    +   FK+S
Sbjct: 280 PGSIDRTLERIKKWREICPELTLRSTFIVGFPGETEEDFQLLLDFLKEAQLDRVGCFKFS 339

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--G 426
           P  G   ++M +QV E+VK ER     +  +E         VG+I+ V+I++  +E   G
Sbjct: 340 PVEGAVATDMPDQVPEDVKEERFHRFMQLQQEISAQRLQQKVGKILSVIIDEIDEEGIIG 399

Query: 427 KLVGRSPWLQSVVLNSK----NHNIGDIIKVRITDVKISTLYG 465
           + +  +P +  VV        +  +G II+V IT      L+G
Sbjct: 400 RSMADAPEIDGVVYIDNVSQIDVKVGQIIQVEITQADEYDLWG 442


>gi|15806170|ref|NP_294874.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Deinococcus
           radiodurans R1]
 gi|81624877|sp|Q9RV79|MIAB_DEIRA RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|6458887|gb|AAF10722.1|AE001964_6 conserved hypothetical protein [Deinococcus radiodurans R1]
          Length = 505

 Score =  378 bits (972), Expect = e-103,   Method: Composition-based stats.
 Identities = 152/448 (33%), Positives = 242/448 (54%), Gaps = 22/448 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +  + +YGCQMN YD+  ++    S G + V S D+AD +++NTC +R K  +KV S LG
Sbjct: 48  KAHLITYGCQMNEYDTHLVQSQLVSFGADIVESPDEADFVLVNTCAVRGKPVDKVRSLLG 107

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +R  K         L+V + GC+AQ E  + + R   V+V++GP +   +   LE    
Sbjct: 108 DLRKQKAQ-----RSLVVGMMGCLAQLEEGQQIARKFEVDVLLGPGSLLDIGAALE---S 159

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            +R     +  ++  + +     G      + A LTI  GCD  CT+C+VP TRG ++SR
Sbjct: 160 NERFWGLQFK-DELHDHIPPPPSGK-----LQAHLTIMRGCDHHCTYCIVPTTRGPQVSR 213

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAW---RGKGLDGEKCTFSDLLYSLSEIKGLVR 262
               ++ E    +  GV E+TLLGQNVNA+   +G  L G   +F+DLL  +    G+ R
Sbjct: 214 HPDDILRELDMQLAAGVREVTLLGQNVNAYGVDQGAKLKGYP-SFADLLRMVGA-SGIER 271

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +++TTSHP + ++ +  A G+   +  ++HLPVQSGSDR+L+ M R +   +Y   I +I
Sbjct: 272 VKFTTSHPMNFTEDVAAAIGETPAICEFVHLPVQSGSDRVLRRMAREYNREKYLTHIAQI 331

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           +   PD+ +++D IVGFPGET++DF+ T+ L D++GY  A+ F YSPR GTP     + +
Sbjct: 332 KKHIPDVVLATDIIVGFPGETEEDFQDTLSLYDEVGYDSAYMFIYSPRPGTPSYKHFQDL 391

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
              +K ERL  L  + ++     N   VG + +VL+     + G L G +      V+  
Sbjct: 392 PRELKTERLQRLIARQKDWSARKNAQKVGTVQQVLLRGDAHDAGFLEGHTRGNHPTVVPK 451

Query: 443 --KNHNIGDIIKVRITDVKISTLYGELV 468
                  G + +VRI       +YG ++
Sbjct: 452 AIGADGAG-VYQVRIDHATPHMMYGHIL 478


>gi|315635047|ref|ZP_07890328.1| RNA modification enzyme [Aggregatibacter segnis ATCC 33393]
 gi|315476309|gb|EFU67060.1| RNA modification enzyme [Aggregatibacter segnis ATCC 33393]
          Length = 478

 Score =  378 bits (972), Expect = e-103,   Method: Composition-based stats.
 Identities = 134/463 (28%), Positives = 218/463 (47%), Gaps = 41/463 (8%)

Query: 21  CIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKV 80
              P   FV S GC  N+ DS R+     S GY  + S ++ADL+++NTC   + A ++ 
Sbjct: 37  SSTPNIGFV-SLGCPKNLVDSERILTELRSNGYNIIPSYENADLVIVNTCGFIDSAVQES 95

Query: 81  YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140
              +G                 V+V GC+  A+ ++I +  P V  + GP +Y  +   +
Sbjct: 96  LEAIGEALEENGK---------VIVTGCLG-AKEDQIRQVHPKVLEISGPHSYETVMNQV 145

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           ++               + +E L     G        A+L I EGCD  CTFC++P  RG
Sbjct: 146 QKY--------VPKPAYNPYESLLPAQ-GVKLTPKHYAYLKISEGCDHRCTFCIIPSMRG 196

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNV----------NAWRGKGLDGE--KCTFS 248
              SR ++QV+DEA++L+D GV E+ ++ Q+           N  +    +G   K    
Sbjct: 197 DLDSRPITQVLDEAKRLVDAGVKELLIVSQDTSAYALDQTKENQNKTVFWNGMPIKNNLI 256

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
            L   L  +   VRL Y   +P       + A G    L+PYL +P+Q  S +ILK+M R
Sbjct: 257 SLCRQLGNLGIWVRLHYVYPYPHVDELIPLMAEG---KLLPYLDIPLQHASPKILKAMKR 313

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
                   + I   R + P++ + S FIVGFPGET++DF+  +D + +    +   FK+S
Sbjct: 314 PGKIDRTLERIKTWREICPELTLRSTFIVGFPGETEEDFQMLLDFLKEAQLDRVGCFKFS 373

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--G 426
           P  G P ++M +QV E+VK ER     +  +    +     +G+ ++V+++   +E   G
Sbjct: 374 PVEGAPATDMPDQVPEDVKEERYHRFMQLQQAISAARLQQKIGKTLKVIVDDINEEGIIG 433

Query: 427 KLVGRSPWLQSVVLNSKNH----NIGDIIKVRITDVKISTLYG 465
           + +  +P +  +V          NIGD+I V ITD     L+G
Sbjct: 434 RSMADAPEIDGLVYVDNQSQSAVNIGDVISVHITDADEYDLWG 476


>gi|300716030|ref|YP_003740833.1| conserved uncharacterized protein [Erwinia billingiae Eb661]
 gi|299061866|emb|CAX58982.1| conserved uncharacterized protein [Erwinia billingiae Eb661]
          Length = 442

 Score =  378 bits (972), Expect = e-103,   Method: Composition-based stats.
 Identities = 132/459 (28%), Positives = 219/459 (47%), Gaps = 35/459 (7%)

Query: 19  DQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAE 78
           +  + P+  FV S GC  N+ DS R+     ++GYE V   DDA+++++NTC   + A +
Sbjct: 4   NTTMAPRVGFV-SLGCPKNLVDSERILTELRTEGYEVVPRYDDAEIVIVNTCGFIDSAVQ 62

Query: 79  KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPE 138
           +    +G              +  V+V GC+  A+  +I    P V  + GP +Y ++  
Sbjct: 63  ESLEAIGEA---------LNENGKVIVTGCLG-AKENQIREVHPKVLEITGPHSYEQVLS 112

Query: 139 LLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
            + R               + F  L + + G        A+L I EGC+  CTFC++P  
Sbjct: 113 HVHRY--------VPKPAHNPFLSL-VPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSM 163

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA------WRGKGLDGE--KCTFSDL 250
           RG   SR +  V+DEA++L + GV E+ ++ Q+ +A       R    +G   K +   L
Sbjct: 164 RGDLDSRPIGSVLDEAKRLAEAGVKELLVISQDTSAYGVDVKHRTGFWNGSPVKTSMVSL 223

Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
              L+++   VRL Y   +P       + A G    L+PYL +P+Q  S RILK M R  
Sbjct: 224 CEQLAKLGVWVRLHYVYPYPHVDDVIPLMAEG---KLLPYLDIPLQHASPRILKLMKRPG 280

Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370
                 + I R R + PD+ + S FIVGFPGET++DF+  +D + +    +   FKYSP 
Sbjct: 281 AVERTLERIKRWREICPDLTLRSTFIVGFPGETEEDFQMLLDFLKEARLDRVGCFKYSPV 340

Query: 371 LGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKL 428
            G   + + + V E+VK ER     +  +          VG+ I V+I++  +E   G+ 
Sbjct: 341 EGATANQLPDPVPESVKEERYDRFMQLQQAISAERLQEKVGREILVIIDEVDEEGAIGRS 400

Query: 429 VGRSPWLQS-VVLNSKN-HNIGDIIKVRITDVKISTLYG 465
           +  +P +   V LN +     GD+++V++ +     L+ 
Sbjct: 401 MADAPEIDGAVYLNGEKSLKPGDVVRVKVDNADEYDLWA 439


>gi|326201371|ref|ZP_08191243.1| RNA modification enzyme, MiaB family [Clostridium papyrosolvens DSM
           2782]
 gi|325988939|gb|EGD49763.1| RNA modification enzyme, MiaB family [Clostridium papyrosolvens DSM
           2782]
          Length = 436

 Score =  378 bits (972), Expect = e-103,   Method: Composition-based stats.
 Identities = 134/448 (29%), Positives = 235/448 (52%), Gaps = 18/448 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++    + GC++N Y+S  +  +F   GYE V+    +++ ++NTC +   +  K    +
Sbjct: 2   KKVAFYTLGCKVNQYESEAVSSIFEQNGYEIVSFEQVSNVYIINTCTVTNLSDRKSRQAI 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            + +       K   D +V+V GC AQ   EE+L + P VN+V+G +   R+ E +ER  
Sbjct: 62  RKAK-------KTNPDSIVIVMGCYAQTSSEEVL-KIPGVNMVIGTKDRGRILEYVERIE 113

Query: 145 FGKRVVDTDYSVE--DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            G+  ++   ++     FE L +       K    A+L IQEGC +FC +C++PY RG  
Sbjct: 114 AGECRINAVDNIMASRSFEELKLS----TFKERTRAYLKIQEGCSQFCAYCIIPYARGPI 169

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR    +++E R+L D+G  E+ L G ++ ++   G + E  +  D++  +  I G+ R
Sbjct: 170 RSRKPDDIIEEVRQLADSGFLEVVLTGIHLASY---GRELEDTSLLDIIRKIHSIDGIKR 226

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R  +  P  ++   ++A   L  L P+ HL +QSG D+ L  MNR++   EYR+ ++ +
Sbjct: 227 IRLGSIEPTTITKEFVEAAVGLPKLCPHFHLSLQSGCDKTLVEMNRKYNTDEYRRSVELL 286

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           ++  PD+AI++D +VGFPGET +DF  + D  ++IG+++   FKYSPR GTP + M  QV
Sbjct: 287 KNNIPDVAITTDLMVGFPGETGEDFAESRDFAEEIGFSKIHVFKYSPRKGTPAAGMKNQV 346

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVLN 441
               K  R   +     E +  + +  VG+ +EVL E+    E G + G +     V+  
Sbjct: 347 SPEEKERRSEIMLALSDELEKKYLEKYVGRDMEVLYEQEMHGEDGYIEGLTNNYIRVMAK 406

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELVV 469
                 G + + +++ V      G++V 
Sbjct: 407 GDISLKGKLAETKLSKVNGVLFEGKIVA 434


>gi|304440349|ref|ZP_07400238.1| MiaB family RNA modification enzyme [Peptoniphilus duerdenii ATCC
           BAA-1640]
 gi|304371101|gb|EFM24718.1| MiaB family RNA modification enzyme [Peptoniphilus duerdenii ATCC
           BAA-1640]
          Length = 444

 Score =  378 bits (972), Expect = e-103,   Method: Composition-based stats.
 Identities = 130/446 (29%), Positives = 225/446 (50%), Gaps = 17/446 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + +  + GC  N  D+  M  +   +  E  N++DDAD+I++NTC   E A E+      
Sbjct: 3   KVYFITLGCSKNDVDTDLMNTILDEKKSEATNNVDDADVIIVNTCGFIESAKEESIDMTL 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            + + K +         +++AGC+A+    E+++  P ++ ++G     ++ E+++ +  
Sbjct: 63  EVASYKEN----KKLKSLILAGCLAERYSNELMKEIPEIDGIIGTGHLNKINEVIDLSLE 118

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           GK+ V       +  E         N    +T ++ I EGCD FCT+C++P  +G   SR
Sbjct: 119 GKKPVFIGDINSEYLEGNLKSKQDIN----ITEYVKISEGCDNFCTYCIIPKLKGKNRSR 174

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            L  +V E + L++NG  E+ L+ QN     G  L GE    + LL+ L +I+ L  +R 
Sbjct: 175 KLENIVGEVKYLVENGTREVILIAQNTT-DYGIDLYGE-YRLAKLLHELEKIEDLKWIRV 232

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
              +P   +  LI    +   L+ Y  +P+Q  SD +LK MNRR    + + +I  +RS 
Sbjct: 233 MYLYPDHFTKELIDEFKNNKKLVKYADIPLQHVSDNVLKRMNRRTNKEDIKNLIKTLRSE 292

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
             D+ I + FIVGFPGET++DF   ++ ++     +  +F YS   GTP +N+  Q+ E+
Sbjct: 293 IDDMVIRTTFIVGFPGETEEDFMELLEFINFAKLDRVGAFTYSKEEGTPAANLEGQISED 352

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQS-VVL 440
           +K +R   +  +         ++ VG+++EVLIE+   +K   +GRS    P + + V+ 
Sbjct: 353 IKQDRFERIMMEQMGISEELLNSKVGKVLEVLIEEKADDK-TYIGRSEYDAPEIDTEVIF 411

Query: 441 NSKNHN-IGDIIKVRITDVKISTLYG 465
            S     IG  +KV I D +   L G
Sbjct: 412 TSDRELEIGSFVKVFIEDSQEYELLG 437


>gi|83648001|ref|YP_436436.1| 2-methylthioadenine synthetase [Hahella chejuensis KCTC 2396]
 gi|123726293|sp|Q2SBG3|RIMO_HAHCH RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|83636044|gb|ABC32011.1| 2-methylthioadenine synthetase [Hahella chejuensis KCTC 2396]
          Length = 439

 Score =  378 bits (972), Expect = e-103,   Method: Composition-based stats.
 Identities = 127/455 (27%), Positives = 208/455 (45%), Gaps = 34/455 (7%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC  N  DS R+     ++GYE   S +DAD++++NTC   + A ++    +G
Sbjct: 7   KVGFVSLGCPKNTVDSERILTQLRTEGYEISASYEDADVVLVNTCGFIDSAVQESLDAIG 66

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                            V+V GC+  A+ + I    P V  V GP  Y  +   + +   
Sbjct: 67  EALRENGK---------VIVTGCLG-AKEDVIREVHPKVLAVSGPHAYTEVMNQVHQVAP 116

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                      E       + D G        A+L I EGC+  CTFC++P  RG  +SR
Sbjct: 117 ---------KPEYNPFVNLVPDTGVKLTPKHYAYLKISEGCNHRCTFCIIPSFRGDLVSR 167

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYSLSEI 257
            +  V+ EA++L+ NGV E+ ++ Q+ +A+      R    +G   K    +L   L  +
Sbjct: 168 PIGDVLGEAQRLVKNGVKELLVISQDTSAYGVDTKYRTGFWEGRPVKTRMKELCDELGRM 227

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
              VRL Y   +P       + A G    ++PYL +P Q  S  +LK+M R   A +   
Sbjct: 228 GVWVRLHYVYPYPHVDDVIPLMADG---KILPYLDIPFQHASPSVLKNMRRPAHAEKVLH 284

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
            I + R   PDI + S FIVGFPGET++DF+  ++ +++    +   FKYSP  G   + 
Sbjct: 285 RIGKWREQCPDITLRSTFIVGFPGETEEDFQTLLNFLEEAQLDRVGCFKYSPVEGATANE 344

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG--KLVGRSPWL 435
           + + V+E VK ER     +  +    S   A +G+ ++V++++  +E    +    +P +
Sbjct: 345 LPDPVEEVVKQERWERFMEVQQRISASRLQAKIGKRMDVIVDEVVEEGAVCRSKADAPEI 404

Query: 436 QSVVL--NSKNHNIGDIIKVRITDVKISTLYGELV 468
              V   N  +   GD++ V I D     L+G  V
Sbjct: 405 DGQVFLDNQTHLKPGDLVTVEIEDADEYDLWGRPV 439


>gi|304436321|ref|ZP_07396298.1| MiaB family RNA modification enzyme [Selenomonas sp. oral taxon 149
           str. 67H29BP]
 gi|304370676|gb|EFM24324.1| MiaB family RNA modification enzyme [Selenomonas sp. oral taxon 149
           str. 67H29BP]
          Length = 442

 Score =  378 bits (972), Expect = e-103,   Method: Composition-based stats.
 Identities = 131/450 (29%), Positives = 214/450 (47%), Gaps = 17/450 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC  N+ D+  M  +    G +  N   +AD++++NTC   + A E+  + + 
Sbjct: 2   KAGFISLGCAKNLVDTEVMLGIMREHGIDITNDPSEADILIVNTCAFIQSAKEESITTVL 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            + + K      G    ++VAGC+ Q  G+++L   P  + ++G   + R+ E++E    
Sbjct: 62  GMADYKE----TGRCRSLIVAGCLGQRYGQQLLDEIPEADAIIGTGAWSRIMEVIEATLK 117

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G+R++      +D                  TA++ I EGCD  C FC +P  RG   SR
Sbjct: 118 GRRLLIAG--KDDTIYDAKTPR--LRTTPNYTAYVKIAEGCDHRCAFCAIPLIRGSFRSR 173

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            +  +V E R+L   GV E+ L+ Q+ +A  G     +K     LL  L++I G+  +R 
Sbjct: 174 PMEDIVAEGRELAAAGVRELVLIAQD-SANYGLDCY-QKPMLPTLLRELAKIDGIAWIRV 231

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
             S+P+  +D LI+       ++ Y+ LP+Q   D +L+SMNR  T     ++I ++R+ 
Sbjct: 232 LYSYPKYFTDELIEVFATEPKVVKYVDLPLQHAHDAVLRSMNRPDTRAGMEELIAKLRAR 291

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P +AI S FIVGFPGETD  ++     V+K  + +   F YS    T  + M ++V E 
Sbjct: 292 IPGVAIRSTFIVGFPGETDAQYQTLRRFVEKQRFDKVGIFTYSEEEDTAAAAMGKKVSEE 351

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRS----PWLQSVVL 440
           V  ER   L     +     N     Q ++VLIE H  E  G  VGRS    P +   + 
Sbjct: 352 VMQERYHDLMSLQSKISEEINIGLEHQELDVLIEGHDAEQSGIAVGRSYREAPEVDGQIY 411

Query: 441 NSKNHN--IGDIIKVRITDVKISTLYGELV 468
              +     G+I++VR+       + GE V
Sbjct: 412 IEGDAEGAPGEIVRVRLLQGFTYDIVGERV 441


>gi|311109259|ref|YP_003982112.1| RNA modification enzyme, MiaB family protein [Achromobacter
           xylosoxidans A8]
 gi|310763948|gb|ADP19397.1| RNA modification enzyme, MiaB family protein [Achromobacter
           xylosoxidans A8]
          Length = 477

 Score =  378 bits (972), Expect = e-103,   Method: Composition-based stats.
 Identities = 134/467 (28%), Positives = 218/467 (46%), Gaps = 34/467 (7%)

Query: 14  VSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIR 73
           ++ +  +   P+  FV S GC   + DS R+     ++GYE     DDAD++V+NTC   
Sbjct: 33  IAAVNAEGRTPRVGFV-SLGCPKALVDSERILTQLRTEGYEVTPEYDDADVVVVNTCGFI 91

Query: 74  EKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTY 133
           + A  +    +G                 V+V GC+   E   I    P V  V GPQ Y
Sbjct: 92  DSAKAESLEAIGEALAENGK---------VIVTGCMGVEE-SVIRDVHPSVLAVTGPQQY 141

Query: 134 YRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC 193
             +   +  A   K+  +    +        +   G        A+L I EGC+  C+FC
Sbjct: 142 EEVVRAVHEAAPPKKDHNPYLDL--------VPPQGIKLTPRHYAYLKISEGCNHRCSFC 193

Query: 194 VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KC 245
           ++P  RG  +SR +  V+ EA +L+  GV E+ ++ Q+ +A+      R    +G   K 
Sbjct: 194 IIPSMRGNLVSRPVGDVLSEAERLVKAGVKELLVISQDTSAYGVDVKYRSGFWNGRPVKT 253

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
             ++L  +LSE+    RL Y   +P       + A G    ++PYL +P Q  S RILK+
Sbjct: 254 RMTELCMALSEMGVWTRLHYVYPYPHVDEVIPLMAEG---KILPYLDIPFQHASPRILKA 310

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           M R     +    I R R + PD+ I S FIVGFPGET++DF+  +D + +    +   F
Sbjct: 311 MKRPAFEDKTLARIKRWREICPDLTIRSTFIVGFPGETEEDFQYLLDWMQEAQLDRVGCF 370

Query: 366 KYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK 425
           +YSP  G P + +   V ++VK ER     +  +    +     VG+ I+VLI++  ++ 
Sbjct: 371 QYSPVEGAPANLLDNPVPDDVKQERWERFMELQQSISTARLAKKVGREIDVLIDEVDEDG 430

Query: 426 --GKLVGRSPWLQSVVLNS--KNHNIGDIIKVRITDVKISTLYGELV 468
             G+    +P +   V  S  K    GD+++VR+TD     L+ + +
Sbjct: 431 AVGRSSADAPEIDGCVYVSSDKPLKAGDLVRVRVTDSDEYDLWADAI 477


>gi|329122066|ref|ZP_08250674.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Dialister micraerophilus
           DSM 19965]
 gi|327466873|gb|EGF12389.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Dialister micraerophilus
           DSM 19965]
          Length = 445

 Score =  378 bits (972), Expect = e-103,   Method: Composition-based stats.
 Identities = 137/452 (30%), Positives = 238/452 (52%), Gaps = 17/452 (3%)

Query: 19  DQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAE 78
           +QC   ++    + GC++N YDS  M  +F  +GY+ V   + AD+ ++NTC +      
Sbjct: 6   EQCKNTKKVSFITLGCKVNQYDSDAMRTLFIHRGYKPVEHSEVADVYIINTCSVTSIGDR 65

Query: 79  KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPE 138
           K    + +IR       +   D ++   GC AQ   EE+  +   V+V+VG Q   ++ +
Sbjct: 66  KSRQVIRKIR-------RNNPDAVIAATGCYAQVAPEEL-EKMGDVDVIVGHQNRNKIVD 117

Query: 139 LLERARFGKRVVDT--DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
            +E A   ++ V+   D     ++E L++   G  + R   AF+ +QEGCD +CTFC++P
Sbjct: 118 YIEEAEKSEKTVNAVKDIMSIREYENLTVDPEGEVKAR---AFVKVQEGCDNYCTFCIIP 174

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256
           Y RG   SR     VDE +KL++ G  E+ L G ++    GK L     + S L+  L +
Sbjct: 175 YARGRLKSRKQEDAVDEIKKLVEKGYREVVLTGIHLG-NYGKDL-RNGTSLSTLVSELLK 232

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           I  L+R+R  +    ++SD LI    +   +  +LHLP+QSGSD +LKSMNR +   +Y+
Sbjct: 233 IPNLLRIRLGSIESVELSDELINIIKNEKRVCHHLHLPLQSGSDAVLKSMNRHYRLRQYK 292

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
            +I  +R   P++A+++D IVGFPGET+++F+ T++ + ++ ++    F +S R GTP +
Sbjct: 293 DLIAMLRKKIPNLALTTDLIVGFPGETEENFKETLNTLHELKFSAIHVFPFSKRTGTPAA 352

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQ 436
               Q+    K +R+  +Q+  ++    F    + +I+ VL E   K++    G S    
Sbjct: 353 MYPNQITNEEKKKRVHRVQELEKKISKEFRCEFLNKIVHVLAE--NKKEEYFEGFSDEYI 410

Query: 437 SVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            V +  +N   G +  V + +V    L G ++
Sbjct: 411 RVTIKGENVKRGHLYSVIVEEVTDEGLIGRVI 442


>gi|158320272|ref|YP_001512779.1| MiaB-like tRNA modifying enzyme [Alkaliphilus oremlandii OhILAs]
 gi|158140471|gb|ABW18783.1| MiaB-like tRNA modifying enzyme [Alkaliphilus oremlandii OhILAs]
          Length = 433

 Score =  378 bits (972), Expect = e-103,   Method: Composition-based stats.
 Identities = 142/444 (31%), Positives = 238/444 (53%), Gaps = 16/444 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++    + GC++N Y++  M ++F  +GYE V+  + AD+ V+NTC +     +K   F+
Sbjct: 2   KKVAFHTLGCKVNQYETQAMGELFEKEGYEIVSDEEVADVYVINTCTVTNVGDKKSRQFI 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R +       +   + ++ V GC AQ   +E+L     VN+V+G     ++ E +E   
Sbjct: 62  RRAK-------RNNEEAIIAVVGCYAQTAPKEVLA-IEGVNIVIGTNERNKIVEAVENCS 113

Query: 145 FGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             +++ +  D     +FE +SIVD     K    AFL IQEGC+++CT+C++PY RG   
Sbjct: 114 TEEKISLVDDIMKVKQFEEMSIVDV----KDKTRAFLKIQEGCNQYCTYCIIPYARGPIR 169

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR   ++V+E   L+  G  E+ L G +V ++     DG       +L  ++  +GL R+
Sbjct: 170 SRGPLEIVEEVETLVQKGFKEVVLTGIHVASYGKDRSDG--TDLIHILKQVNGAQGLERI 227

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R ++  P   +D  ++    LD +  + HL +QSG +  LK MNR++TA EY++I  RIR
Sbjct: 228 RLSSLEPTLFTDDFLRELSQLDKICDHFHLSLQSGCNATLKRMNRKYTAEEYKEIAGRIR 287

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
            V P++A+++D IVGFPGET+++F  T + +  IG+++   FKYSPR GTP S   EQVD
Sbjct: 288 KVYPEVALTTDVIVGFPGETEEEFNTTYEFIKDIGFSEIHVFKYSPRTGTPASKYKEQVD 347

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRSPWLQSVVLNS 442
              K  R   L     + +  +    VG+  +VL E   KE K  + G +     V++ +
Sbjct: 348 GLTKHYRSEKLIDLGEKMKNQYRGQFVGKERKVLFEAISKENKAYMEGYTDNYLKVLVPA 407

Query: 443 KNHNIGDIIKVRITDVKISTLYGE 466
                G++  V + ++K   + GE
Sbjct: 408 SEVVEGELTNVVLKELKEEYILGE 431


>gi|284048079|ref|YP_003398418.1| RNA modification enzyme, MiaB family [Acidaminococcus fermentans
           DSM 20731]
 gi|283952300|gb|ADB47103.1| RNA modification enzyme, MiaB family [Acidaminococcus fermentans
           DSM 20731]
          Length = 437

 Score =  378 bits (971), Expect = e-103,   Method: Composition-based stats.
 Identities = 139/451 (30%), Positives = 233/451 (51%), Gaps = 22/451 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++    + GC++N  D+  ME +F   G++ V+  + AD+ ++NTC +      K    +
Sbjct: 2   KKIAFYTLGCKVNQSDTASMEKLFRDAGFQIVDFEEPADICLINTCVVTNMGQSKSRKII 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R         +     L+VV GC  Q   +E++     V++++G Q   ++ EL+ R R
Sbjct: 62  HRAA-------RRDPKPLIVVTGCYPQTSPDEVVH-IDGVDLIIGNQDRSKVVELV-RER 112

Query: 145 FGKRVVDT------DYSVEDKFERLSI-VDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197
            G+   +       D  V  +FE L   VD   NR     AFL IQEGCD++C +C++PY
Sbjct: 113 LGESPDEAPINAVHDLPVGREFEELDAAVDASRNR-----AFLKIQEGCDQYCAYCIIPY 167

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257
            RG   SRSL  + +E  KL      EI L+G ++    GK + G       +  +LS  
Sbjct: 168 ARGHLRSRSLDNIREEVAKLTAEQYKEIVLIGIHLG-CYGKEIPGGPHLSDAVKAALSAE 226

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
             + RLR  +    ++ D L+        L  +LHLP+Q+G D  L  M+R +   ++ Q
Sbjct: 227 PQVPRLRLGSLESVEVEDALLDLMAREPRLCAHLHLPLQAGCDSTLARMHRPYDTAKFAQ 286

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
           ++++IRS+ P++AI++D IVGFPGET++DF+A++D + +  +++   F YS R GTP + 
Sbjct: 287 LLEKIRSLVPNVAITTDVIVGFPGETEEDFQASLDFIRQCRFSKIHIFPYSQRKGTPAAV 346

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQS 437
           M +Q+    K ER+  L++  RE  +++    +GQ   VL E+  K  G   G +P    
Sbjct: 347 MPDQISNQEKQERVHRLEEVDREGNLAYRKEQIGQESTVLWERRNKNNGLWEGLTPGYVR 406

Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           V  +S  +  G I  VR+ ++    L G ++
Sbjct: 407 VYADSPENMKGKISAVRLENLFEDGLKGGII 437


>gi|302035686|ref|YP_003796008.1| putative tRNA modifying enzyme, MiaB-like [Candidatus Nitrospira
           defluvii]
 gi|300603750|emb|CBK40082.1| putative tRNA modifying enzyme, MiaB-like [Candidatus Nitrospira
           defluvii]
          Length = 484

 Score =  378 bits (971), Expect = e-102,   Method: Composition-based stats.
 Identities = 128/468 (27%), Positives = 216/468 (46%), Gaps = 22/468 (4%)

Query: 13  MVSQIVDQCIVPQ---RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNT 69
           M S ++      +        + GC  N  DS  M     + G++       A+++++NT
Sbjct: 1   MASSLITPSRAKRDKPTIGFVNLGCSKNQVDSEVMLGTLVAGGFQLTGDARAAEVVIINT 60

Query: 70  CHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG 129
           C   E+A ++  + +     LK    K G   +++ AGC+AQ    E+L+  P ++ VVG
Sbjct: 61  CGFIEEAKQESINSIIEHGRLK----KSGSCRVLIAAGCLAQRYQGELLKELPELDGVVG 116

Query: 130 PQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKR---GVTAFLTIQEGC 186
              + R+ E+       K      +  +  +    + D    R R     +A+L I EGC
Sbjct: 117 TGEFGRIAEICRSLLAPKARQQRLWIGQPPY----LYDAETPRIRLGTPHSAYLKIAEGC 172

Query: 187 DKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT 246
           ++ C FC +P  RG + SR +  +V EA +L+  GV E+ L+ Q+     G  L G K  
Sbjct: 173 NRNCAFCAIPIMRGKQRSRPIESIVAEAGRLVQEGVKELNLISQDT-INYGVDL-GLKQG 230

Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306
            + LL  L  +K +  +R    +P+ ++D L+  +     +  YL +P+Q  SD +LK M
Sbjct: 231 LTALLRELVTVKDVRWIRPFYLYPQQVTDELLDLYAGEARITKYLDMPLQHISDGMLKRM 290

Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
           +R        Q+++RIR+  P +   + FIVGFPGETD  F      +  + + +   F 
Sbjct: 291 HRLGDRKHVTQLVERIRAKIPGVFFRTAFIVGFPGETDAMFEELKQFILDMEFDRVAVFL 350

Query: 367 YSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG 426
           YS   GT   ++  +VD  V  ER   L         + N A +G+ +EVL++   +E  
Sbjct: 351 YSDEEGTSAVDLDRKVDLAVMEERRNELLALQESISEAKNRAYLGRTMEVLVDGISEESD 410

Query: 427 KLV-----GRSPWLQSVVL-NSKNHNIGDIIKVRITDVKISTLYGELV 468
           +L+     G +P +  VV  +      G+ + V ITDV    L  + V
Sbjct: 411 RLLECRHEGLAPEIDGVVFCDRNAAKPGEFVSVTITDVAGYDLIAQPV 458


>gi|325290323|ref|YP_004266504.1| SSU ribosomal protein S12P methylthiotransferase [Syntrophobotulus
           glycolicus DSM 8271]
 gi|324965724|gb|ADY56503.1| SSU ribosomal protein S12P methylthiotransferase [Syntrophobotulus
           glycolicus DSM 8271]
          Length = 442

 Score =  378 bits (971), Expect = e-102,   Method: Composition-based stats.
 Identities = 115/450 (25%), Positives = 219/450 (48%), Gaps = 17/450 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + ++  V + GC  N  DS  +      + Y+ V+    A +I++NTC   ++A ++  +
Sbjct: 1   MKKKVAVINLGCPKNQVDSEVLAGFLVRK-YQLVDEPAKAHIIIVNTCTFIDEAKQESIN 59

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            L ++   K    K G    V+  GC+AQ  G+E++   P +++V+G      + + +E 
Sbjct: 60  ELCQMVEYK----KNGICEKVIATGCMAQRYGKELIEEIPELDMVLGDGNLANILDHIEE 115

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           A+  + +   +       E++         +    A++ I EGC+  C++CV+P  +G  
Sbjct: 116 AKDKRLLTWQETQSFLYDEKMP----RQRFEESHYAYIKIAEGCNNRCSYCVIPQIKGSY 171

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR+   ++ E   L + GV EI +  Q+   +      G +   ++LL +++EI G+  
Sbjct: 172 RSRTKESILGEVAWLAEQGVKEIIVTAQDTTRYGMDIYQGLE--LANLLAAIAEIDGIEW 229

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R    +P   +D LI+       +  YL +P+Q  +++IL  MNRR+   +  ++I+++
Sbjct: 230 IRLLYCYPEVFTDELIEVMRKEPKICKYLDIPLQHANNKILTEMNRRYLKQDVERLINKL 289

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R   PDI + + FI GFPGE ++++    + V ++ + +   F YS    TP     +QV
Sbjct: 290 RKAIPDIVLRTTFITGFPGEGEEEYAELQNFVREMKFDRLGVFAYSREENTPAGMRKDQV 349

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK---GKLVGRSPWLQSVV 439
            E V+ +R   L +   EQ        +G+ ++VL+E+        G+  G +P +   V
Sbjct: 350 PEEVREDRKNRLLELQAEQAEENQKKWIGKTVKVLLEERLDHTQWLGRSEGDAPEIDGQV 409

Query: 440 LN---SKNHNIGDIIKVRITDVKISTLYGE 466
                 K  + GD+I+V +T+  I  L GE
Sbjct: 410 YVRAQKKEFSTGDMIEVTVTNADIYDLEGE 439


>gi|156538649|ref|XP_001607691.1| PREDICTED: similar to radical sam proteins [Nasonia vitripennis]
          Length = 660

 Score =  378 bits (971), Expect = e-102,   Method: Composition-based stats.
 Identities = 151/480 (31%), Positives = 244/480 (50%), Gaps = 46/480 (9%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           Q+ +++ YGCQMNV D+  +  +     Y+    + DA++I+L TC IRE A  KV++ L
Sbjct: 163 QKVYLEVYGCQMNVNDTEVVSAILKKHNYKITKDIMDANVILLVTCAIRENAENKVWNKL 222

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            + R LK  ++       + + GC+A+    +I+ +  IV+++ GP +Y  LP LL  + 
Sbjct: 223 KQFRILKERKV----VSKIGLLGCMAERLKHKIIEKEKIVDIIAGPDSYKDLPRLLAISN 278

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
             +  ++   S+++ +  ++ V    + K    A+++I  GCD  CT+C+VP+TRG E S
Sbjct: 279 EHETAINVALSLDETYADVTPVRLNPDSK---AAYVSIMRGCDNMCTYCIVPFTRGRERS 335

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAW-------RGKGLDGEKCT----------- 246
           R +S ++DE ++L D G+ E+TLLGQNVN++            D  + T           
Sbjct: 336 RPISSILDEVQQLSDQGIKEVTLLGQNVNSYRDISESKYYTSADTPQKTNLVKGFNTVYK 395

Query: 247 -------FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
                  FS LL  +S I   +R+R+T+ HP+D  D +I    +   +   +HLP QSGS
Sbjct: 396 TKLGGLRFSHLLDKVSLINPEMRIRFTSPHPKDFPDEVIHLIAERPNICKQIHLPAQSGS 455

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
             +L  M R ++   Y  ++  IR++ PDIAISSDFI GF  ET+ +F  T+ L++++ Y
Sbjct: 456 TDVLTRMRRGYSREAYLDLVYHIRNIIPDIAISSDFIAGFCNETEKEFEETLTLIEEVKY 515

Query: 360 AQAFSFKYSPRLGTPGSNML-EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI 418
             AF F YS R  T       + VD+ +K +RL  + K  R +        +G+   VL+
Sbjct: 516 TTAFLFAYSMREKTTAYRRYSDNVDKKIKIQRLQKMIKLYRTEVERLYKNSIGKQQLVLV 575

Query: 419 EKHGKEKGK-LVGRSPWLQSVVLNSKNHNI------------GDIIKVRITDVKISTLYG 465
           E   K   K L GR+     V+  ++                GD I V I +     L G
Sbjct: 576 EGESKRSVKDLQGRNDGNVKVIFPNEPIPSSNTSTSYKPIQNGDYIVVHICNANSQILRG 635


>gi|261749500|ref|YP_003257186.1| RNA modification protein [Blattabacterium sp. (Periplaneta
           americana) str. BPLAN]
 gi|261497593|gb|ACX84043.1| RNA modification protein [Blattabacterium sp. (Periplaneta
           americana) str. BPLAN]
          Length = 466

 Score =  378 bits (971), Expect = e-102,   Method: Composition-based stats.
 Identities = 151/458 (32%), Positives = 247/458 (53%), Gaps = 29/458 (6%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           ++++SYGCQMN+ D+  +  +    G+   N++  A +I+LNTC IR+KA   + + L  
Sbjct: 15  YYIESYGCQMNISDTEIIISILSKNGFLLTNNLKKAHIILLNTCAIRKKAELSIKNRLEN 74

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           +R LK++  K     L  + GC++++E       S +++  +GP +Y ++P+++      
Sbjct: 75  LRYLKSNNQKI---PLFGILGCLSKSEK-----YSNLIDFSIGPNSYRKIPDIIRLVMMN 126

Query: 147 K----RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
                + +    +  + +E +S           +T FL+I  GCD  CTFC+VP+TRG E
Sbjct: 127 DEKKIKPILLSENQNETYENISPSPSIKK----ITTFLSITRGCDNMCTFCIVPFTRGRE 182

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK-----------CTFSDLL 251
            S S   ++ E   L + G  E+TLLGQNV+++   G   +K             FS LL
Sbjct: 183 RSSSPYSIIKECENLYEKGYKEVTLLGQNVDSYLWFGGGLKKQIKIDNNNEKIIDFSRLL 242

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
             L+     +R+R++TS+P DMSD +I+       +  ++HLPVQSGS++ILK MNR++T
Sbjct: 243 DLLASKIPFMRIRFSTSNPHDMSDRVIEVISKHSNICKHIHLPVQSGSNKILKLMNRKYT 302

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
             +Y  +I +IRS+ P+ +IS D I GF  E ++D   T+ L++K+ Y   + F YSPR 
Sbjct: 303 REKYLSLIQKIRSIIPECSISHDIITGFCNEEEEDHLETISLMNKVKYDYGYMFSYSPRA 362

Query: 372 GTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LV 429
           GT     + + V EN+K +RL  +    R   +      +G I EVLIE   K+  +   
Sbjct: 363 GTYAYKKLKDNVPENIKKKRLKEIIDLQRIHSIFRMKKYLGTIQEVLIEGKSKKNNQDWY 422

Query: 430 GRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
           GR+     VV   K   IG+ + V+IT+   +TL G +
Sbjct: 423 GRNTQNIVVVFPKKLSKIGETVFVKITNCTSATLIGRI 460


>gi|163847415|ref|YP_001635459.1| MiaB-like tRNA modifying protein YliG [Chloroflexus aurantiacus
           J-10-fl]
 gi|222525264|ref|YP_002569735.1| MiaB-like tRNA modifying enzyme YliG [Chloroflexus sp. Y-400-fl]
 gi|238065320|sp|A9WDA3|RIMO_CHLAA RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|163668704|gb|ABY35070.1| MiaB-like tRNA modifying enzyme YliG [Chloroflexus aurantiacus
           J-10-fl]
 gi|222449143|gb|ACM53409.1| MiaB-like tRNA modifying enzyme YliG [Chloroflexus sp. Y-400-fl]
          Length = 455

 Score =  378 bits (971), Expect = e-102,   Method: Composition-based stats.
 Identities = 126/462 (27%), Positives = 214/462 (46%), Gaps = 28/462 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           ++ + + GC  N  DS  M+ +  +QG++ V S ++AD+I++NTC     A  +    L 
Sbjct: 2   KYHIVTLGCPKNAVDSEGMDGLLSTQGHQAVASAEEADVIIVNTCSFIAAARAETLGVLK 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR- 144
            +   K           ++ AGC+AQ+   E+      V+  +G Q + ++  L+ +   
Sbjct: 62  ELAGRKR------PGQRLIAAGCMAQSHPHEVAGVQ-GVDATLGTQQWTQINALVGQLER 114

Query: 145 ------FGKRVVDTDYSVEDKFERLSIVDGGYNRKRG----VTAFLTIQEGCDKFCTFCV 194
                  G+ V     +     +  S  D    + R      +A+L I +GC+  C FC 
Sbjct: 115 PVIPLTPGQPVATIPLTTTTNGQPTSYADWRTTQIRRTHQTPSAYLKISDGCNLRCAFCT 174

Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL 254
           +P  +G   S+ +  V+ EA++L+  GV EI L+ Q++    G+ L G K   + LL  L
Sbjct: 175 IPSFKGDMRSKPVGAVLAEAQELVAGGVREIVLVAQHLT-DYGRDL-GLKDGLATLLAEL 232

Query: 255 SEI-KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
            ++      +R   ++P  +S+ LI        +  YL +P+Q      L+ M R     
Sbjct: 233 CQVTPPETWIRLMYAYPHGISERLITTMASYPQICHYLDMPLQHAHPATLRRMRRPPDTD 292

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
              +II  +R+  PDIAI S FIVG+PGET  +F A ++ +      +  +F+YS   GT
Sbjct: 293 RTLRIIAELRAAMPDIAIRSTFIVGYPGETTAEFHALLEFLQTAQLDRVGAFRYSREPGT 352

Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG---KLVG 430
           P + + +QV   V   R   L +  +    + N   VG+ I+VLIE +G         +G
Sbjct: 353 PAAELPDQVRPQVIERRWHELMRLQQTISYTRNQRWVGRTIKVLIEGNGTADDGSALSIG 412

Query: 431 RS----PWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           RS    P +   V    N+  G +I V++T      L+GE +
Sbjct: 413 RSFRDAPEIDGQVFVWGNYPAGTMIPVQVTQATAYDLWGEAL 454


>gi|225164430|ref|ZP_03726689.1| 2-alkenal reductase [Opitutaceae bacterium TAV2]
 gi|224800953|gb|EEG19290.1| 2-alkenal reductase [Opitutaceae bacterium TAV2]
          Length = 473

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 118/454 (25%), Positives = 197/454 (43%), Gaps = 17/454 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +  + S GC  N+ DS  M       G   V   D AD++++NTC   + + E+  + + 
Sbjct: 6   KVSLVSLGCAKNLVDSEIMIGHLHQAGMSVVPETDQADVVIVNTCSFIDSSKEESINHIL 65

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA-- 143
                     K   +  ++VAGC++Q   +E+    P V+  +G      +  ++E    
Sbjct: 66  AAHQA-RGLSKRRKEQKLIVAGCMSQRFSKELPAAMPEVDAFIGLDQLTGIAPIIEEITG 124

Query: 144 -RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            + GK+    ++               +      TA++ I EGC+  C FC++P  RG  
Sbjct: 125 RKRGKKDAPANFIEGRSTYIPDYDTPRFRLTPKHTAYIKIAEGCNHPCAFCIIPQIRGRH 184

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK-----------CTFSDLL 251
            SRS+  VV EAR+L+  GV E+ L+ Q+   +     +                 + LL
Sbjct: 185 RSRSVESVVAEARRLVAEGVKELNLISQDTTYFGMDTWEQRPNPRSPVDSSRGTALTTLL 244

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
             L+ I+G   +R   +HP   SD LI+       +  Y+ +P+Q  SD +L  M R  +
Sbjct: 245 RELNAIEGDFWIRLLYTHPAHWSDELIRTIAACPKVARYIDIPLQHISDHMLGLMQRETS 304

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
               R +I RIR+  P IA+ + FIVGFPGET DD       +    + +   F+YS   
Sbjct: 305 GAYIRDLIARIRAGIPGIAVRTTFIVGFPGETPDDVEELCHFIRDTQFERLGVFRYSQEE 364

Query: 372 GTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR 431
           GT  + M+ Q+    K  R        +E     ++  VG+ + VL+E+ G  +G+    
Sbjct: 365 GTKAARMVGQLSFKAKDARWHQTMSLQKEIAAQVSERYVGRTLRVLVEEPGIARGE--AD 422

Query: 432 SPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYG 465
           +P +   V   +   +G+   V IT      L  
Sbjct: 423 APDIDGRVYVPRELPVGEFADVTITGFADYDLLA 456


>gi|153854410|ref|ZP_01995688.1| hypothetical protein DORLON_01683 [Dorea longicatena DSM 13814]
 gi|149752936|gb|EDM62867.1| hypothetical protein DORLON_01683 [Dorea longicatena DSM 13814]
          Length = 442

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 128/448 (28%), Positives = 229/448 (51%), Gaps = 30/448 (6%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++  + + GC++N Y++  M+++    GYE V   + AD+ ++NTC +   A  K    L
Sbjct: 2   KKVALHNLGCKVNAYETEAMQELLEKHGYEIVPFQEGADVYIINTCTVTNMADRKSRQML 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            + R       K   D +VV  GC  QA+ ++I      +++VVG      + E+LE   
Sbjct: 62  HKAR-------KMNPDSIVVACGCYVQAKKDDI---PEGIDIVVGNNKKQNIVEILENYE 111

Query: 145 FGK----RVVDTDYSVEDKFERLSIVDGGYNR----------KRGVTAFLTIQEGCDKFC 190
             K    +   +D   ++      I+D  + +               A++ +Q+GC++FC
Sbjct: 112 KEKNQDGQRETSDEQEKETETYQEILDINHEKVYEDLHLSTAAEHTRAYIKVQDGCNQFC 171

Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDL 250
           ++C++P+ RG   SRS   V+DE + L  NG  E+ L G ++++  G   D        L
Sbjct: 172 SYCIIPFARGRVRSRSRDSVLDEVKTLSANGYKEVVLTGIHLSS-YGIDCDDN---LLSL 227

Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
           + ++ E++G+ R+R  +  PR +++   +    L  + P+ HL +QSG +  LK MNRR+
Sbjct: 228 ILAIHEVEGIERIRLGSLEPRIITEEFAQTIAKLPKMCPHFHLSLQSGCNATLKRMNRRY 287

Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370
           TA EY +    +R    + A+++D IVGFPGET+++F  +   VDK+ + +   FKYS R
Sbjct: 288 TAEEYYEKCQLLRKYFDNPALTTDVIVGFPGETEEEFAESKAFVDKVDFYETHIFKYSRR 347

Query: 371 LGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK--L 428
            GT  + M +QV + +KA R   L +  R++Q  + +  +G   EVLIE+     G+   
Sbjct: 348 EGTKAAAMKDQVPDQIKAARSAELLELNRKKQAVYEERLLGTTQEVLIEEKIVRDGEELQ 407

Query: 429 VGRSPWLQSVVLNSKNHNIGDIIKVRIT 456
           +G +     + + + N+ I  ++ V I 
Sbjct: 408 IGHTKEYVKIGVKNPNNLINQLVNVEIE 435


>gi|317177084|dbj|BAJ54873.1| putative ATP-binding protein [Helicobacter pylori F16]
          Length = 437

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 141/445 (31%), Positives = 240/445 (53%), Gaps = 19/445 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + ++++ GC MN  DS  +        Y+  +    ADLI++NTC +REK   K++S +G
Sbjct: 2   KVYIETMGCAMNSRDSEHLLSELSKLDYKETSDPKAADLILINTCSVREKPERKLFSEIG 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           +   +K        +  + V GC A   G +IL+++P V+ V+G +   ++ +++ + + 
Sbjct: 62  QFAKIKK------PNAKIGVCGCTASHMGSDILKKAPSVSFVLGARNVSKISQVIHKEKA 115

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            +  +D D S        +     + +K  + + L I  GCDK CT+C+VP+TRG EIS 
Sbjct: 116 VEVAIDYDES--------AYAFEFFEKKAQIRSLLNISIGCDKKCTYCIVPHTRGKEISI 167

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE-KCTFSDLLYSLSEIKGLVRLR 264
            +  ++ EA KL +NG  E+ LLGQNVN +  +  +   K  FSDLL  LSEI+G+ R+R
Sbjct: 168 PMDLILKEAEKLANNGTKELMLLGQNVNNYGARFSNEHAKVDFSDLLDKLSEIQGIERIR 227

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +T+ HP  M D  ++       +   +H+P+QSGS  +LK M R ++   +   ++R+++
Sbjct: 228 FTSPHPLHMDDAFLERFAKNPKVCKSIHMPLQSGSSTVLKMMRRGYSKEWFLNRVERLKA 287

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           + P++ IS+D IVGFP E+D DF  TM++++K+ +   +SF YSPR  T      E+V  
Sbjct: 288 LVPEVGISTDIIVGFPNESDKDFEDTMEVLEKVRFDTLYSFIYSPRPFTEAGAWKERVPL 347

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV---GRSPWLQSVVLN 441
            V + RL  LQ + +E         VG+   VL+E   +   ++V   GRS   + + + 
Sbjct: 348 EVSSSRLERLQNRHKEILEEKAKLEVGKTHVVLVENRREINNQIVGFEGRSDTGKFIEVA 407

Query: 442 -SKNHNIGDIIKVRITDVKISTLYG 465
             +  N G++++V I       L  
Sbjct: 408 CKEKRNPGELVRVEIVSHSKGRLMA 432


>gi|254361128|ref|ZP_04977272.1| 2-methylthioadenine synthetase [Mannheimia haemolytica PHL213]
 gi|153092619|gb|EDN73668.1| 2-methylthioadenine synthetase [Mannheimia haemolytica PHL213]
          Length = 445

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 132/463 (28%), Positives = 215/463 (46%), Gaps = 41/463 (8%)

Query: 21  CIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKV 80
              P   F+ S GC  N+ DS R+     + GY  + S ++ADL+++NTC   + A ++ 
Sbjct: 2   SASPNIGFI-SLGCPKNLVDSERILTELRADGYNIIPSYENADLVIVNTCGFIDSAVQES 60

Query: 81  YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140
              +G                 V+V GC+  A+  +I    P V  + GP +Y  +   +
Sbjct: 61  LESIGEALEANGK---------VIVTGCLG-AKENQIREVHPKVLEITGPHSYEAVMNHV 110

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
            +              E       +   G        A+L I EGCD  CTFC++P  RG
Sbjct: 111 HKY---------VPKPEFNPYTSLVPKQGIKLTPKHYAYLKISEGCDHRCTFCIIPSMRG 161

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW----------RGKGLDGE--KCTFS 248
              SRS+ QV+DEA++L+D GV E+ ++ Q+ +A+          +    +G   K    
Sbjct: 162 DLASRSIVQVLDEAKRLVDAGVKELLIVSQDTSAYSLDRKKEEATKTVFWNGMPIKSNLI 221

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
            L   L  +   VRL Y   +P       + A G    ++PYL +P+Q  S +ILK+M R
Sbjct: 222 TLCEQLGSMGVWVRLHYVYPYPHVDDLIPLMAAG---KILPYLDIPLQHASPKILKAMKR 278

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
             +     + I + R + P++ + S FIVGFPGET++DF+  +D + +    +   FK+S
Sbjct: 279 PGSIERTLERIKKWREICPELTLRSTFIVGFPGETEEDFQLLLDFLKEAQLDRVGCFKFS 338

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--G 426
           P  G   ++M +QV E VK ER     +  +E   +   A +G+ ++V+I+   +E   G
Sbjct: 339 PVEGAVATDMPDQVPEEVKEERFHRFMQLQQEISAARLQAKIGKTVQVIIDDIDEEGIIG 398

Query: 427 KLVGRSPWLQSVVLNSKNHN----IGDIIKVRITDVKISTLYG 465
           + +  +P +  VV      N    +G II V IT      L+G
Sbjct: 399 RSMADAPEIDGVVYVDNPSNQLVTVGQIISVTITHADEYDLWG 441


>gi|226355861|ref|YP_002785601.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Deinococcus
           deserti VCD115]
 gi|226317851|gb|ACO45847.1| putative tRNA-i 6A37 modification enzyme MiaB (2-methylthioadenine
           synthetase) [Deinococcus deserti VCD115]
          Length = 459

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 154/448 (34%), Positives = 236/448 (52%), Gaps = 22/448 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +  V +YGCQMN YD+  +E    S G + V  +D+AD +++NTC +R K  +KV S LG
Sbjct: 2   KATVITYGCQMNEYDTHLVESQLVSLGADLVQGVDEADFVLVNTCAVRGKPVDKVRSLLG 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +R +K         L+V + GC+AQ E  + + R   V+V++GP +   + + LE    
Sbjct: 62  TLRKIKAQ-----RPLVVGMMGCLAQLEEGQQMARKFEVDVLLGPGSLLDIGQALE---S 113

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            +R     +  ++  E +     G      + A LTI  GCD  CT+C+VP TRG ++SR
Sbjct: 114 NERFWGLQFK-DELHEHIPPAPTGK-----LQAHLTIMRGCDHHCTYCIVPTTRGPQVSR 167

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK---CTFSDLLYSLSEIKGLVR 262
           S   ++ E    +  GV E+TLLGQNVNA  G           +F+DLL  +    G+ R
Sbjct: 168 SPDDILRELDLQLAAGVQEVTLLGQNVNA-YGVDQGARLAGYPSFADLLRLVGR-SGVRR 225

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +++TTSHP + ++ +  A  +   +  ++HLPVQSGS+ +L+ M R +T  +Y Q I  I
Sbjct: 226 IKFTTSHPMNFTEDVAAAMAETPAVCEFVHLPVQSGSNHVLRRMAREYTREKYLQHIAEI 285

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R   P   +++D IVGFPGET++DF+ T+ L D++GY  A+ F YSPR GTP       +
Sbjct: 286 RRHLPHAVLATDIIVGFPGETEEDFQDTLSLYDEVGYDSAYMFIYSPRPGTPSYKHFADL 345

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
              +K ERL  L  + +E     N   VG + EVL+     + G L G +      V+  
Sbjct: 346 PRELKTERLQRLIARQKEWSARKNAEKVGSVQEVLLRGDAHDAGFLEGHTRGNHPTVVPK 405

Query: 443 --KNHNIGDIIKVRITDVKISTLYGELV 468
                  G +  VRI       +YG ++
Sbjct: 406 AIGASQAG-VYPVRIEHATPHMMYGRIL 432


>gi|323140804|ref|ZP_08075720.1| ribosomal protein S12 methylthiotransferase RimO
           [Phascolarctobacterium sp. YIT 12067]
 gi|322414720|gb|EFY05523.1| ribosomal protein S12 methylthiotransferase RimO
           [Phascolarctobacterium sp. YIT 12067]
          Length = 441

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 134/450 (29%), Positives = 218/450 (48%), Gaps = 17/450 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +  + S GC  N+ DS  M  +   +  E  N   DA+LI++NTC   E A E+  S + 
Sbjct: 2   KIGMVSLGCPKNLVDSEVMLGIIKDKQLEITNDPADAELIIVNTCGFIESAKEESISTIL 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           ++   K      G    +++ GC+ Q   +E+    P V+ +VG  ++  +  ++++   
Sbjct: 62  QMAQYKEE----GSCKYLIMTGCLGQRYADELFESMPEVDAIVGTDSFTDIGWVIDQVLA 117

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           GKRV           +                A+L I EGCD  C++C++P  RG   SR
Sbjct: 118 GKRVKHLQKLESKNVQ----TPPRMLTTPDYMAYLKIAEGCDNCCSYCIIPQLRGPYTSR 173

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
              +V+ EAR L  +GV E+ ++ Q+     G+ L G K     LL  L+E++G+  +R 
Sbjct: 174 PYDEVMAEARSLAAHGVKELIVVAQDTT-RYGEDLIG-KLLLPQLLRDLNELEGIEWIRV 231

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
              +P + +D LI A  + D +  Y+ +P+Q  SDR+L+SMNR  T  +  +++ ++R  
Sbjct: 232 MYLYPNNFTDDLIAAFAECDKVCKYIDIPLQHASDRLLESMNRYDTRAQVEELLAKLRER 291

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P I I + FIVGFPGETD+DF   MD V+K  +  A  F+YS   GT    M  Q++  
Sbjct: 292 IPGITIRTTFIVGFPGETDEDFAELMDFVEKQRFENAGVFQYSQEEGTVAGAMENQIEPE 351

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL-VGRS----PWLQSVVL 440
           VK  R   L           +     + ++V++E   +E   L VGRS    P +   + 
Sbjct: 352 VKENRYHELMALQAGISEEIHQEREDEELDVIVEGFDEENPALAVGRSYHEAPDIDGNIF 411

Query: 441 --NSKNHNIGDIIKVRITDVKISTLYGELV 468
             N+    +G +++VRI       +  ELV
Sbjct: 412 IENAAELEVGQMVRVRILQGFTYEMVAELV 441


>gi|315924493|ref|ZP_07920714.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Pseudoramibacter
           alactolyticus ATCC 23263]
 gi|315622197|gb|EFV02157.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Pseudoramibacter
           alactolyticus ATCC 23263]
          Length = 444

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 127/446 (28%), Positives = 210/446 (47%), Gaps = 20/446 (4%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
            F+ + GC  N  DS +M       GY   +  D A LI++NTC   E A ++    +  
Sbjct: 7   VFISTLGCDKNTVDSEQMAGGLLQAGYRVTDEPDAASLIIVNTCCFIEAAKKESIDKIFE 66

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
               K      G     VVAGC+AQ   +E+ +  P ++  +G      LPE++      
Sbjct: 67  YLPFKTR----GNCECFVVAGCMAQRYAKELRKEIPEIDFFIGVNQIDDLPEVISHQSEE 122

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           K  +   +S        +     Y + + VTA+L I EGCD  CT+C +P  RG   SR+
Sbjct: 123 KAFISAHFS--------ASAAPRYLKDKTVTAYLKISEGCDNHCTYCAIPTIRGRHHSRT 174

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
              ++ EA+ L  +GV E+ L+ QN+    G  L G +   + LL  LSE      +R  
Sbjct: 175 PEAILAEAKILYSSGVRELILVAQNLT-QYGSDLPGNE-NLASLLTQLSEKIPFKWIRLL 232

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
             +P  +++ L+ A    + +  Y  +P+Q   + ILK M R     +    +  IR + 
Sbjct: 233 YLYPEGITEELLTAIKHHENICRYFDMPIQHTENEILKRMGRHIDKAQIYDKVKLIRKML 292

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           PD  + +  I GFPGE++  F   +  +  + + +  +F YS   GTP   M +Q+D+ V
Sbjct: 293 PDAVLRTTVIAGFPGESEAQFEEMLADLQTLRFERLGAFAYSREEGTPAYTMADQIDKTV 352

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQS-VVLN 441
           K  RL  + ++ +    + N+A +G+ +EVLI++  +  G  +GR+    P +   V++ 
Sbjct: 353 KETRLRRIYEQQQGITAAANEAMIGKTVEVLIDE-NQTNGVSIGRTRGEAPEVDCDVLIE 411

Query: 442 SKNHNIGDIIKVRITDVKISTLYGEL 467
             +  +G   KV+I D     L GEL
Sbjct: 412 QSDLPVGQFFKVKIIDSIEYDLIGEL 437


>gi|166031237|ref|ZP_02234066.1| hypothetical protein DORFOR_00924 [Dorea formicigenerans ATCC
           27755]
 gi|166029084|gb|EDR47841.1| hypothetical protein DORFOR_00924 [Dorea formicigenerans ATCC
           27755]
          Length = 428

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 129/442 (29%), Positives = 233/442 (52%), Gaps = 23/442 (5%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + ++  + + GC++N Y++  M+++    GYE V   + AD+ ++NTC +   A  K   
Sbjct: 1   MKKKAALHNLGCKVNAYETEAMQELLEQNGYEIVPFKEGADVYIINTCTVTNIADRKSRQ 60

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            L + R       K   D +VV  GC  QA GE+I    P V++VVG      L  +L+ 
Sbjct: 61  MLHKAR-------KMNPDAVVVATGCYVQARGEDI---DPCVDIVVGNNKKKDLIAILDE 110

Query: 143 ARFGKRVVD---TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
               +  V     D + E ++E + +     +      A++ +Q+GC++FC++C++PY R
Sbjct: 111 YYNAQHKVKKELLDINHEKEYEEMQVT----HTAEHTRAYIKVQDGCNQFCSYCIIPYAR 166

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G   SR+L  V++E R L  +G  E+ L G ++++  G        +  +L+  + EI G
Sbjct: 167 GRVRSRNLEHVLEEVRTLAASGYKEVVLTGIHLSS-YGIDT---GESLLELIQKVHEIDG 222

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           + R+R  +  PR +++    +   L  + P+ HL +QSG +  L+ MNRR++A EY +  
Sbjct: 223 IKRIRLGSLEPRIITEEFASSIAALPKMCPHFHLSLQSGCNATLRRMNRRYSAEEYMEKC 282

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
           D +R    + A+++D IVGFPGET ++F  +MD VD++ + +   FKYS R GT  + M 
Sbjct: 283 DLLRKYFHNPALTTDVIVGFPGETQEEFAESMDFVDRVNFYETHIFKYSRRAGTKAAVMP 342

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK--HGKEKGKLVGRSPWLQS 437
           +Q+ E +K+ER   + +    +Q ++ +  +G   EVL+E+    ++    VG +     
Sbjct: 343 DQIPEEIKSERSAKMIELGHRKQKAYEERLLGTTQEVLMEEAVETEDGIYQVGHTKEYVK 402

Query: 438 VVLNSKNHNIGDIIKVRITDVK 459
           + L ++ +    +  V+I D K
Sbjct: 403 IGLKTEENLSNQLKNVKIEDTK 424


>gi|291515240|emb|CBK64450.1| SSU ribosomal protein S12P methylthiotransferase [Alistipes shahii
           WAL 8301]
          Length = 432

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 119/455 (26%), Positives = 206/455 (45%), Gaps = 35/455 (7%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEKVYS 82
           ++  V + GC  N  DS  +     + GYE +   D  DA ++V+NTC     A ++   
Sbjct: 2   KKINVITLGCSKNTVDSEHLMARLAAAGYEVLFDSDRTDAKVVVINTCGFIGDAKQESID 61

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            + R    K +    G    + V GC+++   +E+    P V+   G +T+  +   L  
Sbjct: 62  MILRAAAAKQA----GKIERLFVVGCLSERYADELRAEIPEVDDYFGARTWDGIVRALGA 117

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           +                 E  ++            A+L I EGC+  C +C +P  RG  
Sbjct: 118 S-----------------EDPALATERRLTTPKHYAYLKISEGCNWKCGYCAIPLIRGAH 160

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +S  + ++ +EARKL   GV E+ ++ Q+   + G  L G +   ++LL  L  I G+  
Sbjct: 161 VSVPMEELEEEARKLAGQGVRELMVIAQDTT-YYGIDLYGRRM-LAELLRRLCRIDGIEW 218

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R   ++P    D +I+A      +  YL +P Q  SD  L SM+RRHT  E  ++I R+
Sbjct: 219 IRLHYAYPAGFPDEVIEAMASEPKICKYLDIPFQHISDAQLASMHRRHTKAEAMELIGRL 278

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT-PGSNMLEQ 381
           R   PD+A+ +  +VG+PGET+ DF   +  V ++ + +   F YS   GT    N+ + 
Sbjct: 279 RGAIPDLALRTTLLVGYPGETEADFEELLAFVREVRFERLGVFPYSEEEGTWSAENLRDD 338

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQS 437
           + E +K +R   +     E  +  N   VG+   V+I+   ++    VGR+    P +  
Sbjct: 339 IPETIKQQRAERVMALQNEISLENNRRRVGRTERVIID--SRQGDWYVGRTQYDSPEVDQ 396

Query: 438 -VVLNSKNHNI--GDIIKVRITDVKISTLYGELVV 469
            +++ +    +  G    V +T      LYGE+  
Sbjct: 397 EILIPASERRLLRGHFYDVTVTSAADYDLYGEIAA 431


>gi|313206227|ref|YP_004045404.1| SSU ribosomal protein s12p methylthiotransferase [Riemerella
           anatipestifer DSM 15868]
 gi|312445543|gb|ADQ81898.1| SSU ribosomal protein S12P methylthiotransferase [Riemerella
           anatipestifer DSM 15868]
 gi|315023087|gb|EFT36100.1| possible 2-methylthioadenine synthetase [Riemerella anatipestifer
           RA-YM]
 gi|325336326|gb|ADZ12600.1| 2-methylthioadenine synthetase [Riemerella anatipestifer RA-GD]
          Length = 434

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 123/459 (26%), Positives = 215/459 (46%), Gaps = 32/459 (6%)

Query: 17  IVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA 76
           +  +    ++  V + GC  N+YDS  +     + G E V+  +  D++V+NTC   + A
Sbjct: 1   MRTKSTGKKKINVVTLGCSKNLYDSEVLMGQLKANGKEVVHEQERGDIVVINTCGFIDNA 60

Query: 77  AEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL 136
            E+  + +      KN     G    V V GC+++    ++L+  P V+   G +    L
Sbjct: 61  KEESINTILDYVEAKNR----GEVEQVFVTGCLSERYKPDLLKEIPDVDQYFGTRDLPIL 116

Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
            + L            DY  E   ERL+     Y       A+L I EGCD+ C+FC +P
Sbjct: 117 LKHL----------GADYKHELVGERLTTTPKHY-------AYLKISEGCDRPCSFCAIP 159

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256
             RG  +S  + ++V+EA+KL   G  E+ L+ Q++  + G  +  +K    DLL  L +
Sbjct: 160 LMRGGHVSTPIEKLVEEAKKLAKKGTKELILIAQDLT-YYGLDIY-KKRALGDLLKELVK 217

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           + G+  +R   + P    + ++    +   +  Y+ +P+Q  +  +LKSM R  T  +  
Sbjct: 218 VDGIEWIRLHYAFPTGFPEEVLDIIREESKVCNYIDIPLQHINTDLLKSMKRGTTHEKTN 277

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
            ++++ R   P++A+ +  IVG+PGET++ F+   + V +  + +   F YS    T   
Sbjct: 278 ALLNKFREKVPNMAVRTTLIVGYPGETEERFQELKNWVKEQRFDRLGCFTYSHEENTTAY 337

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS---- 432
            + + V + VK  R   +     +     N   VGQ+   + ++  KE    VGR+    
Sbjct: 338 QLEDDVPQEVKEAREEEIMALQSQISWEKNQEKVGQVFRCIFDR--KEGNYFVGRTEFDS 395

Query: 433 PWLQSVVLNSKNH---NIGDIIKVRITDVKISTLYGELV 468
           P + + VL S  +   +IG+   VRIT  +   LYGELV
Sbjct: 396 PDVDNTVLVSAENTYISIGEFANVRITSAEEYDLYGELV 434


>gi|116515198|ref|YP_802827.1| hypothetical protein BCc_272 [Buchnera aphidicola str. Cc (Cinara
           cedri)]
 gi|122285406|sp|Q057G5|MIAB_BUCCC RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|116257052|gb|ABJ90734.1| bifunctional enzyme involved in thiolation and methylation of tRNA
           [Buchnera aphidicola str. Cc (Cinara cedri)]
          Length = 435

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 168/437 (38%), Positives = 268/437 (61%), Gaps = 11/437 (2%)

Query: 36  MNVYDSLRMEDMFFSQG-YERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSR 94
           MN +DS  +E++      Y      + +D+++LNTC IREKA EK++  LGR + LK   
Sbjct: 1   MNEHDSSIIENILKKTNLYIITKKPEISDILILNTCSIREKAQEKLFHQLGRWKKLKQKN 60

Query: 95  IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDY 154
            K     L+ V GCVA  EG++I +R+  ++++ GPQT ++LP+LL  +   K ++  + 
Sbjct: 61  SKI----LIAVGGCVAVQEGKKIYKRAKFIDIIFGPQTLHKLPKLLIESNKKKSLI-INI 115

Query: 155 SVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEA 214
             +   +    ++   N K+  ++F+TI EGC+K+C+FC+VPYTRG E+SR+  +++ E 
Sbjct: 116 KKKSLKKFNYTINKNTNIKKKFSSFVTIMEGCNKYCSFCIVPYTRGKEVSRNNKKIISEI 175

Query: 215 RKLIDNGVCEITLLGQNVNAWRGKGLDGEK-CTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
            +L   GV EITLLGQNVNA++      +K  +FSDLLYS+SEI  + R+R+ TSHP + 
Sbjct: 176 IELSKKGVREITLLGQNVNAYKFSDTFNKKNYSFSDLLYSISEIPRIDRIRFITSHPVEF 235

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
           ++ +I+A+  +  L  +LHLPVQSGS++ILK M R +T  +Y  I+++I+ +RP I ISS
Sbjct: 236 NNNIIEAYKKIPKLTNFLHLPVQSGSNKILKLMKRGYTIEKYENIVNKIKKIRPKINISS 295

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLC 393
           DFI+GFPGET +DF+ T+  + KI +  ++SF YS R  T  S + + V    K +RL  
Sbjct: 296 DFIIGFPGETKEDFQKTIYFISKINFDTSYSFIYSKRPRTRASKLEDNVTMEEKKKRLYK 355

Query: 394 LQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNSKNHNIGDIIK 452
           +Q+K+ +Q   +          VL+E   K    +L GR+   ++V        IG+ IK
Sbjct: 356 VQQKINQQAFQWKRRS--TEQIVLVEGISKNNIQELYGRTENNRTVFFEGNPKFIGNFIK 413

Query: 453 VRITDVKIST-LYGELV 468
           ++I  +K +T L G+++
Sbjct: 414 LKIISIKYNTFLKGKII 430


>gi|146306744|ref|YP_001187209.1| MiaB-like tRNA modifying enzyme YliG [Pseudomonas mendocina ymp]
 gi|238066507|sp|A4XT11|RIMO_PSEMY RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|145574945|gb|ABP84477.1| SSU ribosomal protein S12P methylthiotransferase [Pseudomonas
           mendocina ymp]
          Length = 440

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 133/460 (28%), Positives = 214/460 (46%), Gaps = 34/460 (7%)

Query: 21  CIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKV 80
              P+  FV S GC     DS R+      +GYE V +  DAD++V+NTC   + A  + 
Sbjct: 3   TATPKVGFV-SLGCPKATVDSERILTQLRMEGYEIVPTYQDADVVVVNTCGFIDSAKAES 61

Query: 81  YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140
              +G              +  V+V GC+  AE + I    P V  V GPQ Y ++   +
Sbjct: 62  LDAIGEA---------IAENGKVIVTGCMGVAE-DSIRDVHPSVLAVTGPQQYEQVVSAV 111

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
                           E       +   G        A+L I EGC+  C+FC++P  RG
Sbjct: 112 HEV--------VPPKTEHNPLIDLVPPQGIKLTPRHYAYLKISEGCNHSCSFCIIPSMRG 163

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLY 252
             +SR +  V+ EA +L+  GV E+ ++ Q+ +A+      +    +G+  K    +L  
Sbjct: 164 KLVSRPVGDVLSEAERLVKAGVKELLVISQDTSAYGVDMKYKLDFWNGQPVKTRMLELCE 223

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
           +LS +   VRL Y   +P       + A G    L+PYL +P Q  S ++LKSM R    
Sbjct: 224 ALSSMGVWVRLHYVYPYPNVDDVIPLMAAG---KLLPYLDIPFQHASPKVLKSMKRPAFE 280

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
            +    I + R + P++ I S FIVGFPGET++DF+  +D + +    +   F+YSP  G
Sbjct: 281 DKTLARIKKWREICPELTIRSTFIVGFPGETEEDFQYLLDWLTEAQLDRVGCFQYSPVEG 340

Query: 373 TPGSNM-LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLV 429
            P +++ LE V ++VK ER        +    +   A +G  ++VL+++   E    +  
Sbjct: 341 APANDLGLEPVPDDVKQERWERFMAHQQAISSARLQAKIGLEMDVLVDEVDGEGAVARSW 400

Query: 430 GRSPWLQS-VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
             +P +   V ++S     GD ++VRI D     ++GELV
Sbjct: 401 ADAPEIDGSVFIDSTAVKPGDKVRVRIVDADEYDMWGELV 440


>gi|25989454|gb|AAL82723.1| Fe-S oxidoreductase [Edwardsiella tarda]
          Length = 446

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 126/464 (27%), Positives = 214/464 (46%), Gaps = 35/464 (7%)

Query: 16  QIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREK 75
            + +Q   P      S GC  N+ DS R+     ++GY  V + +DADL+++NTC   + 
Sbjct: 5   AMSNQSRQP-TIGFVSLGCPKNLVDSERILTELRTEGYLVVPTYEDADLVIVNTCGFIDS 63

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135
           A ++    +G              +  V+V GC+  A+  +I    P V  + GP +Y +
Sbjct: 64  AVQESLEAIGEA---------LHENGKVIVTGCLG-AKENQIREVHPKVLEISGPHSYEQ 113

Query: 136 LPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
           +   + +               + F  L + + G        A+L I EGC+  C FC++
Sbjct: 114 VLHHVHKY--------VAKPQHNPFTSL-VPEQGVKLTPKHFAYLKISEGCNHRCAFCII 164

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA------WRGKGLDGE--KCTF 247
           P  RG   SR +  V+DEA++L D+GV E+ ++ Q+ +A       R    +G+  K + 
Sbjct: 165 PSLRGDLESRPIGAVLDEAKRLADSGVRELLVISQDTSAYGADIQHRTGFWNGQPVKTSM 224

Query: 248 SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307
             L   L+ +   +RL Y   +P       + A G    L+PYL +P+Q  S RILK M 
Sbjct: 225 LSLCEQLATLGIWIRLHYVYPYPHVDDVIPLMAQG---KLLPYLDIPLQHASPRILKLMK 281

Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           R        + I R R + P + + S FIVGFPGET++DF+  +D + +    +   F+Y
Sbjct: 282 RPGAVERTLERIKRWREICPQLTLRSTFIVGFPGETEEDFQMLLDFLREARLDRVGCFQY 341

Query: 368 SPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-- 425
           SP  G   + + +QV + +K  R     +  ++         VG  + V+I++  +E   
Sbjct: 342 SPVEGAAANELPDQVPDEIKQARFDRFMQLQQQISAERLQEKVGLTLPVIIDEVDEEGAI 401

Query: 426 GKLVGRSPWLQSVVLNSKN--HNIGDIIKVRITDVKISTLYGEL 467
           G+ +  +P +  VV  +       GDI+ V I +     ++G L
Sbjct: 402 GRSMADAPEIDGVVYLNGERGVKPGDIVSVTIENADEYDMWGTL 445


>gi|325109974|ref|YP_004271042.1| 30S ribosomal protein S12P methylthiotransferase [Planctomyces
           brasiliensis DSM 5305]
 gi|324970242|gb|ADY61020.1| SSU ribosomal protein S12P methylthiotransferase [Planctomyces
           brasiliensis DSM 5305]
          Length = 474

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 120/468 (25%), Positives = 226/468 (48%), Gaps = 16/468 (3%)

Query: 5   IKLIGVAHMVSQIVDQCIVPQR--FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDA 62
           + ++ ++   S +        +  +   S GC  N+ DS +M       GY   +    +
Sbjct: 4   LPILDLSPAASTLSAPTSDGAKGQYAFVSLGCPKNLVDSEKMLGTLAVDGYSLTSEPAGS 63

Query: 63  DLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSP 122
           D +++NTC   + + ++    +  +  LK    ++G    V+VAGC+ +  G E+  R P
Sbjct: 64  DFVIVNTCGFIDSSRQESIETIEEMLELK----RQGKTKGVIVAGCLPERIGPELRERLP 119

Query: 123 IVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNR-KRGVTAFLT 181
            ++ +VG      + ++ +R       ++    +       ++ D    R      A+L 
Sbjct: 120 EIDHIVGVFGRDEISKVADRLVGH---INEQRDLFRPAPIRALDDRARLRITPQHFAYLK 176

Query: 182 IQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD 241
           I EGC++ CTFC +P  RG  +++ +  VV+EAR+L  +GV E+ L+ Q+   + G  L 
Sbjct: 177 ISEGCNRTCTFCSIPKMRGKHVTKPIEAVVEEARELAADGVKELILVAQDTT-YYGMDLY 235

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
           GE    +DLL  L +++G+  +R    +P + +D LI    +   ++PYL +P+Q  + R
Sbjct: 236 GE-VRLTDLLGELEKVEGIDWIRLMYLYPINFTDALIDRIANSSKILPYLDMPLQHINSR 294

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
           +LK M RR    +  ++++++R   P++ + + F+VGFPGETD+ F    + V    + +
Sbjct: 295 VLKRMQRRINQEKTYELVEKLRERVPNLVLRTTFVVGFPGETDEQFEELREFVKATRFQR 354

Query: 362 AFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKH 421
              F YS   GTP   +   + E VK +R+  L    +E    F ++ VG  ++VLI++H
Sbjct: 355 MGVFPYSLEPGTPAEKLDGHLPEEVKQQRVDTLMADQQEIAFEFGESLVGYELDVLIDEH 414

Query: 422 GKEK---GKLVGRSPWLQS-VVLNSKNHNIGDIIKVRITDVKISTLYG 465
             +    G+    +P +   V +  +   +G+   V I   +   L G
Sbjct: 415 VGDNVWMGRTFADAPEIDGAVYVQGEGLTVGEFTPVEIVGTQDYDLIG 462


>gi|256370749|ref|YP_003108574.1| RNA modification protein, MiaB family [Candidatus Sulcia muelleri
           SMDSEM]
 gi|256009541|gb|ACU52901.1| RNA modification protein, MiaB family [Candidatus Sulcia muelleri
           SMDSEM]
          Length = 458

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 144/462 (31%), Positives = 254/462 (54%), Gaps = 27/462 (5%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +++++++YGCQMN+ DS  +  +  ++G+ + + + +A++I++NTC IREK+  K+   +
Sbjct: 4   KKYYIENYGCQMNISDSEIVCSILDNEGFIQTDLIQNANIILINTCSIREKSENKILLRI 63

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            +I+ LKN       +L++ + GC+A+   ++  + + IVN+++GP +Y  LP L+++  
Sbjct: 64  NQIKYLKN----YKKNLIIGILGCMAEIFKKKFFKINKIVNLILGPDSYRELPFLIKKIL 119

Query: 145 F-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
               + ++T +S  + +  +        +K  +TAF+TI  GCD  CTFCVVP+TRG E 
Sbjct: 120 NQNGKYINTYFSNNETYSDILP----KRKKEKITAFVTIMRGCDNMCTFCVVPFTRGREK 175

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC--------------TFSD 249
           SR    ++ E   L   G  EI LLGQNV+++   G   +K                F  
Sbjct: 176 SRDPISILKECEFLFQKGFKEIILLGQNVDSYFWYGGGLKKNFNKFSFSLKNNTIINFPK 235

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
           LL  +++    +R+R+ TS+P  ++  ++        +  ++HLPVQSGS++IL  MNR+
Sbjct: 236 LLELVAKTVPFMRIRFWTSNPNQITFNVLNVMKKYKNICKHIHLPVQSGSNKILSLMNRK 295

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369
           ++  EY  +I++I  + P+ +IS D I GF  E++ D   T++L++ + Y  ++ F YSP
Sbjct: 296 YSREEYILLINQIYKIIPNCSISCDIITGFCNESEKDHNETLNLMNYVKYNFSYMFIYSP 355

Query: 370 RLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GK 427
           R  T       + V   +K  RL  +    R+         +G+I E+LIE   K+    
Sbjct: 356 RKLTYAFKKFNDNVSLTIKKRRLTEIINLQRKHSYYRLKKSIGKIQEILIEGISKKSRNY 415

Query: 428 LVGRSPWLQSVVL--NSKNHNIGDIIKVRITDVKISTLYGEL 467
             GR+     V+   N KN  IG++IKV+I +   +TL GE+
Sbjct: 416 FYGRNSGNDIVIFNKNKKNSKIGNLIKVKIKNCTSATLIGEI 457


>gi|261496271|ref|ZP_05992676.1| 2-methylthioadenine synthetase [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|261308102|gb|EEY09400.1| 2-methylthioadenine synthetase [Mannheimia haemolytica serotype A2
           str. OVINE]
          Length = 445

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 130/455 (28%), Positives = 212/455 (46%), Gaps = 40/455 (8%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
             S GC  N+ DS R+     + GY  + S ++ADL+++NTC   + A ++    +G   
Sbjct: 9   FISLGCPKNLVDSERILTELRADGYNIIPSYENADLVIVNTCGFIDSAVQESLESIGEAL 68

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
                         V+V GC+  A+  +I    P V  + GP +Y  +   + +      
Sbjct: 69  EANGK---------VIVTGCLG-AKENQIREVHPKVLEITGPHSYEAVMNHVHKY----- 113

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
                   E       +   G        A+L I EGCD  CTFC++P  RG   SRS+ 
Sbjct: 114 ----VPKPEFNPYTSLVPKQGIKLTPKHYAYLKISEGCDHRCTFCIIPSMRGDLASRSIV 169

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAW----------RGKGLDGE--KCTFSDLLYSLSE 256
           QV+DEA++L+D GV E+ ++ Q+ +A+          +    +G   K     L   L  
Sbjct: 170 QVLDEAKRLVDAGVKELLIVSQDTSAYSLDRKKEEETKTVFWNGMPIKSNLITLCEQLGS 229

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           +   VRL Y   +P       + A G    ++PYL +P+Q  S +ILK+M R  +     
Sbjct: 230 MGVWVRLHYVYPYPHVDDLIPLMAAG---KILPYLDIPLQHASPKILKAMKRPGSIERTL 286

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
           + I + R + P++ + S FIVGFPGET++DF+  +D + +    +   FK+SP  G   +
Sbjct: 287 ERIKKWREICPELTLRSTFIVGFPGETEEDFQLLLDFLKEAQLDRVGCFKFSPVEGAVAT 346

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPW 434
           +M +QV E VK ER     +  +E   +   A +G+ ++V+I+   +E   G+ +  +P 
Sbjct: 347 DMPDQVPEEVKEERFHRFMQLQQEISAARLQAKIGKTVQVIIDDIDEEGIIGRSMADAPE 406

Query: 435 LQSVVLNSKNHN----IGDIIKVRITDVKISTLYG 465
           +  VV      N    +G II V IT      L+G
Sbjct: 407 IDGVVYVDNPSNQLVTVGQIISVTITHADEYDLWG 441


>gi|255533406|ref|YP_003093778.1| MiaB-like tRNA modifying enzyme YliG [Pedobacter heparinus DSM
           2366]
 gi|255346390|gb|ACU05716.1| MiaB-like tRNA modifying enzyme YliG [Pedobacter heparinus DSM
           2366]
          Length = 444

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 118/468 (25%), Positives = 220/468 (47%), Gaps = 37/468 (7%)

Query: 13  MVSQIVDQCIVPQR--FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDA---DLIVL 67
           M ++   + +  ++    V + GC  N YDS  +         + V+  +     D++V+
Sbjct: 1   MNTKTPSKIVPVKKPKINVITLGCSKNTYDSEVLMGQLRGNSMDVVHEANKMGKDDIVVI 60

Query: 68  NTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVV 127
           NTC   + A ++    + +   LK      G    V+V GC+++    E+      V+  
Sbjct: 61  NTCGFIDNAKQESIDTILQYSQLKEE----GKVGKVIVTGCLSERYKPELEAEITNVDAF 116

Query: 128 VGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCD 187
            G      L   L            +Y  E   ERL      +       A+  I EGC+
Sbjct: 117 FGTNDLNNLLHAL----------GANYKHELIGERLLTTPSHF-------AYFKIAEGCN 159

Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTF 247
           + C+FC +P  RG  +SR + ++V+EA+ L   G  E+ L+ Q++  + G  + G++   
Sbjct: 160 RPCSFCAIPLMRGKHVSRDMQELVNEAKILAAGGTKELILIAQDLT-YYGLDIYGKR-NL 217

Query: 248 SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307
            +LL  LS++ G+  +R   ++P      ++ A  + + +  YL +P+Q  +D +LKSM 
Sbjct: 218 DELLRRLSDVNGIEWIRLQYAYPSGFPMEILDAMNERENICKYLDMPLQHITDNMLKSMR 277

Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           R  T  +   I+++IR   P IA+ +  I G+PGET+ DF   MD V++  + +   F Y
Sbjct: 278 RGITKQKTIDIVNQIRDKVPGIAMRTTLICGYPGETEQDFEEMMDWVEETRFDRLGCFTY 337

Query: 368 SPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK 427
           S    T   ++++ V + +K ER+  + +  +      N   VG+  +VL+++  KE   
Sbjct: 338 SHEEKTHAHSLVDDVPDEIKQERVDAIMELQQGISYDINQEKVGKTYKVLVDR--KEGAF 395

Query: 428 LVGRS----PWLQS-VVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468
            +GR+    P + + V++++       G  +KV+I   +   LYG++V
Sbjct: 396 FIGRTEFDSPEVDNEVLIDASTGYAANGSFVKVKIDRAEDFDLYGQIV 443


>gi|298242300|ref|ZP_06966107.1| RNA modification enzyme, MiaB family [Ktedonobacter racemifer DSM
           44963]
 gi|297555354|gb|EFH89218.1| RNA modification enzyme, MiaB family [Ktedonobacter racemifer DSM
           44963]
          Length = 502

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 155/504 (30%), Positives = 255/504 (50%), Gaps = 63/504 (12%)

Query: 18  VDQCIVPQ-RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA 76
           +    +P+ ++ + + GCQMN  DS R++ M    G+E   +MD A+L+VLNTC +R+  
Sbjct: 1   MTTTTIPRGKYHIWTVGCQMNQADSQRIQTMLEGMGWEEA-NMDQANLVVLNTCSVRKAP 59

Query: 77  AEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVA--QAEGEEILRRSPIVNVVVGPQTYY 134
            EK ++ L  ++  K  R     DLLV + GC+   Q   +E+ +R P +++ +  +   
Sbjct: 60  EEKAHNQLALLKYAKEKR----DDLLVALMGCMIGNQKTIDELSKRYPHIDLFMKVEQAD 115

Query: 135 RLPELLER---------------------------------------------ARFGKRV 149
            LP  LE                                              +R GKR 
Sbjct: 116 ILPRFLEERWTPISGAGCLDIEFMPNEEALSEQAQRLTTLPNEPQTPTFATSFSRSGKRT 175

Query: 150 VDTDYSVEDKFERLSIVD-GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           V          ER++        +K   TA+L I  GC+K CT+C+VPY RG E SR + 
Sbjct: 176 VLPMAITPKPGERIAHYPTKIEPKKASPTAWLPIVLGCNKVCTYCIVPYRRGRERSRPID 235

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
           +++ EAR L++ G  E+TLLGQ + +  G  L   +   +DL+ SLSEI GL R+R+ TS
Sbjct: 236 ELMIEARLLVEKGAKEVTLLGQTIES-YGLDL-ANQPNLADLMTSLSEIDGLDRIRFMTS 293

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
           +PR M+D +I+    L  +  +L++PVQ+G +  LK M R ++  EY + IDR+R + P+
Sbjct: 294 YPRYMTDSMIERMASLPKVCEHLNIPVQAGHNDTLKRMKRGYSIEEYYEKIDRVRELWPN 353

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           I++S+D IVGF GETD++F+ T+D+++++ +       YS R GT  +   + +    K 
Sbjct: 354 ISLSTDVIVGFCGETDEEFQTTLDMIERVRFDVVHVAAYSVRPGTVAARWEDDIPLVEKK 413

Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK--LVGRSPWLQSVVLNSKNH- 445
            RL  +++   +  ++ N   + +I EVL+E+  +  G+    GR+   + V        
Sbjct: 414 RRLHAVEEVQSKIALAINRQYLDKIEEVLVEESNETHGRQQWKGRNRANKLVFFPQPEEG 473

Query: 446 ----NIGDIIKVRITDVKISTLYG 465
                IGD++ VRI      +L G
Sbjct: 474 QQPIQIGDLVNVRIERTTPWSLQG 497


>gi|302670644|ref|YP_003830604.1| MiaB-like tRNA modifying enzyme [Butyrivibrio proteoclasticus B316]
 gi|302395117|gb|ADL34022.1| MiaB-like tRNA modifying enzyme [Butyrivibrio proteoclasticus B316]
          Length = 451

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 139/453 (30%), Positives = 210/453 (46%), Gaps = 18/453 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC  N  D+  M  M   +G+   +   +A+  V+NTC     A E+  + + 
Sbjct: 2   KILFVSLGCDKNRVDTEVMLGMLADRGHNFTDDEQEAEAAVVNTCCFINDAKEESINTIL 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +      R K G    ++V GC+AQ   EEI    P V+ ++G  +  ++ E L+    
Sbjct: 62  ELAE----RRKSGQLKALIVTGCLAQRYKEEIQDEIPEVDEILGVSSTDKIIEALDETIE 117

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
             ++       +D   +            G+  +L I EGCDK CT+C++P  RG   S 
Sbjct: 118 RNKLFSHKNYFDDVNRKPIGGKKRVITTGGLYNYLKIAEGCDKHCTYCIIPKVRGAYRSV 177

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            + Q++ +AR L + GV E+ L+ Q      G  L GEK    +LL+ L EI G   +R 
Sbjct: 178 PMEQLLADARNLAEAGVTELLLVAQETT-LYGTDLYGEKK-LPELLHKLCEIDGFKWIRI 235

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
              +P ++++ LI+       +  YL +P+QSGSDRILK M RR    E R +++ +R  
Sbjct: 236 LYCYPEEITEELIQTIKTEPKICHYLDIPIQSGSDRILKLMGRRTNNAEIRALVEHLREE 295

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            PDI I +  I GFPGET  D   T  LV+ + + +   F YS    TP + M +QV E 
Sbjct: 296 IPDICIRTTLISGFPGETAADHNETFKLVEDLRFDRLGVFTYSQEEDTPAATMPDQVTER 355

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKH-----GKEKGKLVGRS----PWLQ 436
           VK  R   L +  +E      +  VG+I+E +IE        +E    V R+    P + 
Sbjct: 356 VKNTRRNKLMRLQQEIAFENAENMVGKIVEAVIEGRITDTDDEEGFSYVARTYKDAPDID 415

Query: 437 SVVLNSK---NHNIGDIIKVRITDVKISTLYGE 466
             V  +        GD IKV IT      L GE
Sbjct: 416 GYVFVTGVKRELMTGDYIKVLITGSNEYDLIGE 448


>gi|237653780|ref|YP_002890094.1| ribosomal protein S12 methylthiotransferase [Thauera sp. MZ1T]
 gi|237625027|gb|ACR01717.1| MiaB-like tRNA modifying enzyme YliG [Thauera sp. MZ1T]
          Length = 443

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 130/455 (28%), Positives = 206/455 (45%), Gaps = 35/455 (7%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R    S GC     DS  +     ++GY    S DDADL+V+NTC   + A E+    +G
Sbjct: 11  RVGFVSLGCPKATVDSEHILTRLRAEGYAISGSYDDADLVVVNTCGFIDAAVEESLDAIG 70

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                            V+V GC+  A+ + IL   P V  V GP     +   + R   
Sbjct: 71  EALAENGK---------VIVTGCLG-AKDDVILAAHPQVLAVTGPHATEEVMHAVHRHLP 120

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                       D F  L +   G        A+L I EGC+  C+FC++P  RG  +SR
Sbjct: 121 ---------KPHDPFTDL-VPPQGIRLTPQHYAYLKISEGCNHRCSFCIIPSMRGDLVSR 170

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAW-----RGKGLDGE---KCTFSDLLYSLSEI 257
            + +V+ EA  L D GV E+ ++ Q+ +A+        G  G    K    DL  +L E+
Sbjct: 171 PIHEVMREAEALADAGVKELLVISQDTSAYGVDVKYRTGFWGGRPVKTRLLDLAKALGEL 230

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
              +RL Y   +P       + A G    ++PYL +P Q  S RILK+M R   A    +
Sbjct: 231 GIWIRLHYVYPYPSVDDLIPLMAEG---KILPYLDVPFQHASPRILKAMKRPANAENVLE 287

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
            + + RS+ P++ I S FI GFPGET++DF   ++ +++    +  +F YSP  G   + 
Sbjct: 288 RVRKWRSICPELTIRSTFITGFPGETEEDFEMLLNFLEEAQLDRVGAFAYSPVEGATANE 347

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPWL 435
           +   V + V+ ER   L     +      +A + + + VL+++  +E    +  G +P +
Sbjct: 348 LPGAVPDEVREERRARLMDFQEDISTQRLEAKIDREMTVLVDEVDEEGALARSPGDAPEI 407

Query: 436 QSVVL--NSKNHNIGDIIKVRITDVKISTLYGELV 468
             +V+         GD ++VRITD  +  LY E +
Sbjct: 408 DGLVVIPEGDGLAPGDFVRVRITDCDVHDLYAERI 442


>gi|167854805|ref|ZP_02477583.1| hypothetical protein HPS_00775 [Haemophilus parasuis 29755]
 gi|167854103|gb|EDS25339.1| hypothetical protein HPS_00775 [Haemophilus parasuis 29755]
          Length = 443

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 133/463 (28%), Positives = 212/463 (45%), Gaps = 41/463 (8%)

Query: 21  CIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKV 80
              P   FV S GC  N+ DS R+     S GY  ++S + ADL+++NTC   + A ++ 
Sbjct: 2   SSAPNIGFV-SLGCPKNLVDSERILTELRSDGYNIISSYEGADLVIVNTCGFIDSAVQES 60

Query: 81  YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140
              +G                 V+V GC+  A+  +I    P V  + GP +Y  + + +
Sbjct: 61  LESIGEALEANGK---------VIVTGCLG-AKENQIREVHPKVLEITGPHSYEAVMKHV 110

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
            +              E       +   G        A+L I EGCD  CTFC++P  RG
Sbjct: 111 HKY---------VPKPEYNPYVSLVPKQGIKLTPKHYAYLKISEGCDHRCTFCIIPSMRG 161

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE------------KCTFS 248
              SR + QV+DEA++L+D+GV E+ ++ Q+ +A+       E            K    
Sbjct: 162 DLDSRPIVQVLDEAKRLVDSGVKELLIVSQDTSAYALDKKKEEGTKTVFWNGMPIKNNLI 221

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
            L   L  +   VRL Y   +P       + A G    L+PYL +P+Q  S +ILK+M R
Sbjct: 222 ALCEQLGSMGVWVRLHYVYPYPHVDDLIPLMAQG---KLLPYLDIPLQHASPKILKAMKR 278

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
             +     + I + R + PD+ + S FIVGFPGET++DF+  +D + +    +   FK+S
Sbjct: 279 PGSIDRTLERIKKWREICPDLTLRSTFIVGFPGETEEDFQMLLDFLKEAQLDRVGCFKFS 338

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--G 426
           P  G   + M +QV E VK ER     +  ++         +G+ + V++++  KE   G
Sbjct: 339 PVDGAVATEMEDQVPEEVKEERFHRFMQLQQQISADRLQQKIGRTLSVIVDEIDKEGIIG 398

Query: 427 KLVGRSPWLQSVV----LNSKNHNIGDIIKVRITDVKISTLYG 465
           + +  +P +  VV    L+     +G II V IT      L+G
Sbjct: 399 RSMADAPEIDGVVYVDNLSGAEVKVGQIISVTITQADEYDLWG 441


>gi|315586263|gb|ADU40644.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Helicobacter pylori 35A]
          Length = 437

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 139/445 (31%), Positives = 239/445 (53%), Gaps = 19/445 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + ++++ GC MN  DS  +        Y+  +    ADLI++NTC +REK   K++S +G
Sbjct: 2   KVYIETMGCAMNSRDSEHLLSELSKLDYKETSDPKAADLILINTCSVREKPERKLFSEIG 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           +   +K        +  + V GC A   G +IL+++P V+ V+G +   ++ +++ + + 
Sbjct: 62  QFAKIKK------PNAKIGVCGCTASHMGADILKKAPSVSFVLGARNVSKISQVIHKEKA 115

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            +  +D D S        +     + +K  + + L I  GCDK C +C+VP+TRG EIS 
Sbjct: 116 VEVAIDYDES--------AYAFEFFEKKAQIRSLLNISIGCDKKCAYCIVPHTRGKEISI 167

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL-DGEKCTFSDLLYSLSEIKGLVRLR 264
            +  ++ EA KL  NG  E+ LLGQNVN +  +   +  K  FSDLL  LSEI+G+ R+R
Sbjct: 168 PMDLILKEAEKLASNGTKELMLLGQNVNNYGARFSSEHAKVDFSDLLDKLSEIQGIERIR 227

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +T+ HP  M+D  ++       +   +H+P+QSGS  +LK M R ++   +   ++R+++
Sbjct: 228 FTSPHPLHMNDAFLERFAKNPKVCKSIHMPLQSGSSAVLKMMRRGYSKEWFLNRVERLKA 287

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           + P++ IS+D IVGFP E+D DF  TM++++K+ +   +SF YSPR  T      E+V  
Sbjct: 288 LVPEVGISTDIIVGFPNESDKDFEDTMEVLEKVRFDTLYSFIYSPRPFTEAGAWKERVPL 347

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV---GRSPWLQSVVLN 441
            + + RL  LQ + +E         VG+   VL+E   +   ++V   GRS   + + + 
Sbjct: 348 EISSSRLERLQNRHKEILEEKAKLEVGKTHVVLVENRREINNQIVGFEGRSDTGKFIEVA 407

Query: 442 -SKNHNIGDIIKVRITDVKISTLYG 465
             +  N G++++V I       L  
Sbjct: 408 CKEKRNPGELVRVEIVSHSKGHLIA 432


>gi|229890683|sp|Q7VGP6|MIAB_HELHP RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
          Length = 462

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 155/449 (34%), Positives = 238/449 (53%), Gaps = 21/449 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + F+++ GC MN  DS  M       + Y   N +  ADLI++NTC +REK  +K++S +
Sbjct: 2   KLFIQTLGCAMNERDSAHMIAELRDKKHYTLTNDIKQADLILINTCSVREKPEKKLFSEI 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           G     K +  K      + V GC A   GEEI++++P V+ V+G +   ++ ++LER  
Sbjct: 62  GAFAKEKKAGAK------IGVCGCTASHLGEEIIKKAPSVDFVLGARNVSKITQVLERP- 114

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
              + V+ D   +D     +   G      G+ A L I  GCDK C++C+VP+TRG EIS
Sbjct: 115 ---KAVEVDIDYDDSTYVFASSQGM-----GIKAHLNISIGCDKKCSYCIVPFTRGKEIS 166

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG-LDGEKCTFSDLLYSLSEIKGLVRL 263
                ++ EA+K + +G  E+ LLGQNVN +  +      K  F+ LL +LSEI GL R+
Sbjct: 167 VPKDLLISEAKKCVASGAKELLLLGQNVNNYGVRFSHSHPKTNFTQLLRALSEIDGLYRI 226

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+T+ HP  M D  ++      V+   +H+P+QSGS +ILK M R +    Y   I +++
Sbjct: 227 RFTSPHPLHMDDEFLEEFASNPVIAKGIHIPLQSGSSQILKMMRRGYDKQWYLNRIAKLK 286

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ-- 381
           S+ P++ I +D IVGFP E++ DF  TM+++  + +   +SF YSPR  T      +   
Sbjct: 287 SLVPNVGIGTDIIVGFPTESEQDFEDTMEVLSLVEFDTLYSFVYSPRPHTSAFEYDKSML 346

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK--LVGRSPWLQSVV 439
           V   V  ERL  LQ   +E         +G+I  VLIE H   +G+    GRS   + + 
Sbjct: 347 VSPEVAKERLARLQNLHKEILSKKAQLEIGRIHNVLIENHYNGEGQCWSEGRSSSNKLIK 406

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
           +  K   IG I+KV IT  +   L G  +
Sbjct: 407 ILDKKCEIGSIVKVEITHNEGGGLMGRFI 435


>gi|254422541|ref|ZP_05036259.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Synechococcus sp.
           PCC 7335]
 gi|196190030|gb|EDX84994.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Synechococcus sp.
           PCC 7335]
          Length = 445

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 128/450 (28%), Positives = 216/450 (48%), Gaps = 23/450 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
              +   GC+ N  DS  M  +    GY    + + AD +++NTC   + A E+    L 
Sbjct: 6   TIAISHLGCEKNRVDSEHMLGLLAKAGYGIGANEEGADYVIVNTCSFIQAAREESVRTLV 65

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +               +V+ GC+AQ    E+L   P    +VG   Y+++ +++E+A  
Sbjct: 66  ELAEADKK---------IVITGCLAQHFQGELLDEIPEAVALVGTGDYHKIVDVIEQAEA 116

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           GKRV     S E  +     V        GV A++ I EGCD  C FC++P+ RG + SR
Sbjct: 117 GKRV--KVVSAEPIYIADETVPRYRTTSEGV-AYVRIAEGCDYKCAFCIIPHLRGKQRSR 173

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           S+  +V EA +L D GV E+ L+ Q +    G  L G K   ++L+ +L E+  +  +R 
Sbjct: 174 SIESIVAEAHQLADQGVKELILISQ-ITTNYGVDLYG-KPKLAELIRALGEVD-VPWVRM 230

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
             ++P  ++  +IKA  +    +PYL LP+Q    +IL++MNR        +IID +++ 
Sbjct: 231 HYAYPTGLTPAVIKAIQETPNFLPYLDLPLQHSHPQILRAMNRPWQGQVNDEIIDGLKAS 290

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P+  + + FIVGFPGET++ F      V++  +     F +S   G    ++  Q++++
Sbjct: 291 LPEAVLRTTFIVGFPGETEEQFNHLKSFVERHEFDHVGVFTFSAEEGAVAYDLPNQIEQS 350

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVLN 441
           V  ER   +    +E     N A +G  ++VLIE+     G+L+GRS    P +  +V  
Sbjct: 351 VMDERREAIMLTQQEISFRRNQAQIGTTVKVLIEQENPSTGELIGRSARFAPDVDGLVYV 410

Query: 442 SKNHN----IGDIIKVRITDVKISTLYGEL 467
               +    +G +  V I       L+G +
Sbjct: 411 KGGTSGQTAMGQMTSVLIEAADSYDLFGSV 440


>gi|307636963|gb|ADN79413.1| tRNA-i:6:A37 methylthiotransferase [Helicobacter pylori 908]
 gi|325995554|gb|ADZ50959.1| tRNA-i(6)A37 methylthiotransferase [Helicobacter pylori 2018]
          Length = 437

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 142/449 (31%), Positives = 243/449 (54%), Gaps = 23/449 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + ++++ GC MN  DS  +        Y+  +    ADLI++NTC +REK   K++S +G
Sbjct: 2   KVYIETMGCAMNSRDSEHLLSELSKLDYKETSDPKMADLILINTCSVREKPERKLFSEIG 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           +   +K        +  + V GC A   G +IL+++P V+ V+G +   ++ +++ + + 
Sbjct: 62  QFAKIKK------PNAKIGVCGCTASHMGADILKKAPSVSFVLGARNVSKISQVIHKEKA 115

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            +  +D D S        +     + +K  + + L I  GCDK C +C+VP+TRG EIS 
Sbjct: 116 VEVAIDYDES--------AYAFEFFEKKAQIRSLLNISIGCDKKCAYCIVPHTRGKEISI 167

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL-DGEKCTFSDLLYSLSEIKGLVRLR 264
            +  ++ EA KL +NG  E+ LLGQNVN +  +   +  K  FSDLL  LSEI+G+ R+R
Sbjct: 168 PMDLILKEAEKLANNGTKELMLLGQNVNNYGVRFSSEHAKVGFSDLLDKLSEIQGIERIR 227

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +T+ HP  M+D  ++       +   +H+P+QSGS  +LK M R ++   +   ++R+++
Sbjct: 228 FTSPHPLHMNDEFLERFAKNPKVCKSIHMPLQSGSSAVLKMMRRGYSKEWFLNRVERLKA 287

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           + P++ IS+D IVGFP E+D DF  TM++++K+ +   +SF YSPR  T      E+V  
Sbjct: 288 LVPEVGISTDIIVGFPNESDKDFEDTMEVLEKVRFDTLYSFIYSPRPFTEAGAWKERVPL 347

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV---GRSPWLQSVVLN 441
            V + RL  LQ + +E         VG+   VL+E   +  G++V   GRS   + + + 
Sbjct: 348 EVSSSRLERLQNRHKEILEEKAKLEVGKTHVVLVENRREMDGQIVGFEGRSDTGKFIEVT 407

Query: 442 -SKNHNIGDIIKVRITDVKISTLYGELVV 469
             +  N G++++V I         G L+ 
Sbjct: 408 CKEKRNPGELVRVEIISHS----KGRLIA 432


>gi|169335621|ref|ZP_02862814.1| hypothetical protein ANASTE_02041 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258359|gb|EDS72325.1| hypothetical protein ANASTE_02041 [Anaerofustis stercorihominis DSM
           17244]
          Length = 448

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 131/449 (29%), Positives = 219/449 (48%), Gaps = 15/449 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ FV + GC  N  DS  +  +   QGYE V+    +D I++NTC     A E+  + +
Sbjct: 6   KKVFVLTLGCPKNTVDSENIMYLLSKQGYEIVDDATVSDYIIINTCTFIHDAMEESINSI 65

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
                +K    K+  ++ ++V GC+AQ   +++    P V+  VG   +Y + ++++   
Sbjct: 66  LEATLVK----KDRSEVKIIVTGCLAQRYSKDLKEEIPEVDAFVGTGEFYNMDKIIKSME 121

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
             +   D      D  +                A+L + EGCDK CT+CV+P  RG + S
Sbjct: 122 TEES--DEVIVKVDNIDCPIFETDRTLTTPSHFAYLKVSEGCDKHCTYCVIPSIRGKQRS 179

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R +  +V EA++L D GV E+ L+ Q+V    G  L GE+    +LL  L++I+ +  +R
Sbjct: 180 RKIEDIVSEAKRLADRGVKELILIAQDVGE-YGTDLYGERK-LPELLEELNKIESIHWIR 237

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
               +P  +SD LI    +LD ++ Y+ +P+Q  +D ILK M R+ +  +   +I ++RS
Sbjct: 238 VLYIYPETVSDELIDKFVNLDKVLKYIDMPLQHINDNILKKMGRKTSKEDILTLIRKLRS 297

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
               I I S FI  FPGET+++ +  ++ +      +   FKYS   GTP  +M  QV E
Sbjct: 298 KVNGIKIRSTFITAFPGETEENHKELLEFIKLYQLDRVGFFKYSREEGTPAYDMDNQVSE 357

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRS----PWLQSVV 439
            +K ER + L     +      ++ + + +EVLIE+  + E    +GRS    P +   V
Sbjct: 358 EIKDERYMELMSAQEDVSEELMESYLDKTLEVLIEEKVEDEDNVYIGRSYMDCPEIDGEV 417

Query: 440 LN--SKNHNIGDIIKVRITDVKISTLYGE 466
                K   IG+   + I D     L G 
Sbjct: 418 YVYADKPLEIGNFYDIVIEDSMEYDLIGR 446


>gi|295101447|emb|CBK98992.1| SSU ribosomal protein S12P methylthiotransferase [Faecalibacterium
           prausnitzii L2-6]
          Length = 441

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 129/449 (28%), Positives = 210/449 (46%), Gaps = 16/449 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC  N  D   M  +  S G+E V  + DAD+I++NTC   E A  +    + 
Sbjct: 2   KIACISLGCPKNQVDLDVMVHILLSAGHETVADLADADVILVNTCGFIESAKTEAIENIL 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
              + K +      +L VVV GC+A+    +I    P V+ VVG  +   +  ++ R   
Sbjct: 62  EACSYKQA----NPNLKVVVTGCLAERYRSQIEEEIPEVDAVVGCASNKAIDSIVARLFN 117

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G+  +++    +D      +            A+L I EGC+  C +C +P  RG   SR
Sbjct: 118 GEEHLESYGLKKD----FPLGGKRVIGTPAHYAYLKIAEGCNNRCHYCAIPGIRGPLRSR 173

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            ++  V EAR L   GV E+ ++ Q+  A  G+   G+  +  +LL  L++I GL  +R 
Sbjct: 174 EMADCVAEARWLAGEGVKELIIVAQDPTA-YGEDW-GKPGSICELLDKLNKIPGLEWIRI 231

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
             ++P  ++D  I A    + ++PYL LP+Q  +D ILK+MNRR    E   +I ++R  
Sbjct: 232 MYAYPERITDDFIAAMKRNEKVLPYLDLPIQHCNDTILKNMNRRSNRAELLDVIGKLRRE 291

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P+I + +  I GFPGET++ F    + V ++ + +   F YS    T  + M  Q+D+ 
Sbjct: 292 IPNITLRTTLIAGFPGETEEQFEDLCNFVKEVQFDRLGCFAYSAEENTVAARMDGQIDQE 351

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVLN 441
           VK +R   + +           A VGQ + VL +    E G  + R+    P +   V  
Sbjct: 352 VKDKRAELVMQIQTGIMAQKQAAKVGQTVRVLCDGVDDESGLYLCRTAADAPEVDGNVCV 411

Query: 442 SKNHN--IGDIIKVRITDVKISTLYGELV 468
           S       G+   V + D  +  LYG +V
Sbjct: 412 SSEEPLYPGEFYDVLVDDSDLYDLYGTVV 440


>gi|317180074|dbj|BAJ57860.1| putative ATP-binding protein [Helicobacter pylori F32]
          Length = 437

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 142/449 (31%), Positives = 242/449 (53%), Gaps = 23/449 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + ++++ GC MN  DS  +        Y+  +    ADLI++NTC +REK   K++S +G
Sbjct: 2   KVYIETMGCAMNSRDSEHLLSELSKLDYKETSDPKTADLILINTCSVREKPERKLFSEIG 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           +   +K        +  + V GC A   G +IL+++P V+ V+G +   ++ +++ + + 
Sbjct: 62  QFAKIKK------PNAKIGVCGCTASHMGADILKKAPSVSFVLGARNVSKISQVIHKEKA 115

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            +  +D D S        +     + +K  + + L I  GCDK CT+C+VP+TRG EIS 
Sbjct: 116 VEVAIDYDES--------AYAFEFFEKKAQIRSLLNISIGCDKKCTYCIVPHTRGKEISI 167

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL-DGEKCTFSDLLYSLSEIKGLVRLR 264
            +  ++ EA KL  NG  E+ LLGQNVN +  +   +  K  FSDLL  LSEI+G+ R+R
Sbjct: 168 PMDLILKEAEKLASNGTKELMLLGQNVNNYGARFSSEHAKVDFSDLLDKLSEIQGIERIR 227

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +T+ HP  M+D  ++       +   +H+P+QSGS  +LK M R ++   +   ++R+++
Sbjct: 228 FTSPHPLHMNDAFLERFAKNPKVCKSIHMPLQSGSSAVLKMMRRGYSKEWFLNRVERLKA 287

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           + P++ IS+D IVGFP E+D DF  TM++++K+ +   +SF YSPR  T      E+V  
Sbjct: 288 LVPEVGISTDIIVGFPNESDKDFEDTMEVLEKVRFDTLYSFIYSPRPFTEAGAWKERVPL 347

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV---GRSPWLQSVVLN 441
            V + RL  LQ + +E         VG+   VL+E   +   ++V   GRS   + + + 
Sbjct: 348 EVSSSRLERLQNRHKEILEEKAKLEVGKTHVVLVENGREINNQIVGFEGRSDTGKFIEVA 407

Query: 442 -SKNHNIGDIIKVRITDVKISTLYGELVV 469
             +  N G++++V I         G L+ 
Sbjct: 408 CKEKRNPGELVRVEIISHS----KGRLIA 432


>gi|253583638|ref|ZP_04860836.1| 2-methylthioadenine synthetase [Fusobacterium varium ATCC 27725]
 gi|251834210|gb|EES62773.1| 2-methylthioadenine synthetase [Fusobacterium varium ATCC 27725]
          Length = 445

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 134/453 (29%), Positives = 224/453 (49%), Gaps = 23/453 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +F + S GC  N+ DS     +    +G+E  + + +AD+I++NTC     A ++    +
Sbjct: 2   KFALISLGCSKNLVDSENFIGILVNKRGFEVTSELGEADIIIVNTCGFIGDAKKESIETI 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             + +LK      G    ++V GC+AQ    EIL+  P V+ V+G     ++ +++E   
Sbjct: 62  LEVSDLK----INGNLKKIIVTGCLAQRYAGEILKELPEVDAVIGTGEIDKIEKVIEEVL 117

Query: 145 FGKRVVDT---DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
             KRVV++   D+  + + +R+             TA+L I EGCD+ CT+C++P  RG 
Sbjct: 118 ADKRVVESTKMDFLADSETDRVLTTASH-------TAYLKIAEGCDRKCTYCIIPQLRGN 170

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
             SR++  ++ EA KL+ +GV E+ LL Q      G  L  EK + + L+  L +I GL 
Sbjct: 171 LRSRTIEDILKEANKLVASGVRELNLLAQETTE-YGIDLYKEK-SLARLMKELVKIDGLK 228

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
            LR     P  ++D LI      + +  Y  +PVQ  SD IL+ M R  +    + I++R
Sbjct: 229 WLRTYYMFPDSLTDELIDVMKTEEKICKYFDIPVQHISDNILQQMGRAKSGNHIKGILNR 288

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           IR   PD  I +  IVGFPGET+++F      +++  +     FKYS    T   +M  Q
Sbjct: 289 IRKEIPDAVIRTAVIVGFPGETEENFEELKAFIEEYKFDYVGVFKYSREEDTKAYDMENQ 348

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GRSP----WLQ 436
           V E +K +R + +     +   + N   +G+I+EV+I+    E   L+ GR+      + 
Sbjct: 349 VPEEIKEKRWIEITNLQTKIAENKNRNMLGKIVEVMIDGVSTESEYLLEGRTKGQALEID 408

Query: 437 S-VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
             V+ N      G+I+KV++         G +V
Sbjct: 409 GKVLTNDGTAKPGEIVKVKLEQNFDYDFIGPIV 441


>gi|189485484|ref|YP_001956425.1| hypothetical protein TGRD_481 [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
 gi|229891020|sp|B1H0D2|MIAB_UNCTG RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|170287443|dbj|BAG13964.1| conserved hypothetical protein [uncultured Termite group 1
           bacterium phylotype Rs-D17]
          Length = 418

 Score =  376 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 143/442 (32%), Positives = 251/442 (56%), Gaps = 26/442 (5%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           + +++ GCQMNV DS  +  +F + G  + N++ +AD+++LNTC +R +A +K +S+LGR
Sbjct: 3   YLIETIGCQMNVCDSDMLVSIFSAYGASKANNLSEADVVILNTCSVRSQAEQKAFSYLGR 62

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           ++  K         + +VV GC+A+  G  I +R   V++++G        ++   A   
Sbjct: 63  VKEFKQK----NPCIKIVVIGCMAERLGPNIKKRFSSVDLIIGA------KDIGNAALKI 112

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
             +  TDYS +     +         K  +  ++TI  GCD +C++C VP+ RG E+S +
Sbjct: 113 MNLFRTDYSAKKVNSEI---------KSKIVRYITIMRGCDNYCSYCAVPFVRGREVSIN 163

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
              +V+E   ++ NG  EI LLGQNVN+++ + ++     F+ L+   + I+ L R+R+ 
Sbjct: 164 CETIVNECSSMVKNGAREIILLGQNVNSYQYEDVN-----FASLIKKTAAIENLERIRFM 218

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
           T+HP+D+SD LIK       + P++H+P+QS SD+ILK+MNR+++   Y  +I ++R+  
Sbjct: 219 TNHPKDLSDDLIKIMATEPKVCPHIHIPMQSASDKILKAMNRKYSYEHYLGLIKKLRTAV 278

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           PD+++++D IVGFPGETD+DF  T+  V  I +   + F+YSPR  T  + M++ V    
Sbjct: 279 PDVSVTTDIIVGFPGETDEDFEDTLKAVKTIRFGGLYVFRYSPRPDTKAAEMIDDVPFEE 338

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHN 446
           K  R   + K+  +  +      +G   +VL E+   + G +  R+   + V    +   
Sbjct: 339 KKRRHAVVLKESNKISIEIVSEMLGSTQQVLAEEI--KNGIIKARTKNGRKVFAEGRKEY 396

Query: 447 IGDIIKVRITDVKISTLYGELV 468
           IG  I V I + KI++L+G++V
Sbjct: 397 IGKHINVNIKEAKINSLFGDIV 418


>gi|15644897|ref|NP_207067.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Helicobacter
           pylori 26695]
 gi|2501535|sp|P56131|MIAB_HELPY RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|2313364|gb|AAD07337.1| conserved hypothetical ATP-binding protein [Helicobacter pylori
           26695]
          Length = 437

 Score =  376 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 142/445 (31%), Positives = 240/445 (53%), Gaps = 19/445 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + ++++ GC MN  DS  +        Y+  N    ADLI++NTC +REK   K++S +G
Sbjct: 2   KVYIETMGCAMNSRDSEHLLSELSKLDYKETNDPKTADLILINTCSVREKPERKLFSEIG 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           +   +K        +  + V GC A   G +IL+++P V+ V+G +   ++ +++ + + 
Sbjct: 62  QFAKIKK------PNAKIGVCGCTASHMGADILKKAPSVSFVLGARNVSKISQVIHKEKA 115

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            +  +D D S        +     + +K  + + L I  GCDK C +C+VP+TRG EIS 
Sbjct: 116 VEVAIDYDES--------AYAFEFFEKKAQIRSLLNISIGCDKKCAYCIVPHTRGKEISI 167

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL-DGEKCTFSDLLYSLSEIKGLVRLR 264
            +  ++ EA KL +NG  E+ LLGQNVN +  +   +  K  FSDLL  LSEI+G+ R+R
Sbjct: 168 PMDLILKEAEKLANNGTKELMLLGQNVNNYGARFSSEHAKVDFSDLLDKLSEIQGIERIR 227

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +T+ HP  M+D  ++       +   +H+P+QSGS  +LK M R ++   +   ++R+++
Sbjct: 228 FTSPHPLHMNDGFLERFAKNPKVCKSIHMPLQSGSSAVLKMMRRGYSKEWFLNRVERLKA 287

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           + P++ IS+D IVGFP E+D DF  TM++++K+ +   +SF YSPR  T      E+V  
Sbjct: 288 LVPEVGISTDIIVGFPNESDKDFEDTMEVLEKVRFDTLYSFIYSPRPFTEAGAWKERVPL 347

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV---GRSPWLQSVVLN 441
            V + RL  LQ + +E         VG+   VL+E   +   ++V   GRS   + + + 
Sbjct: 348 EVSSSRLERLQNRHKEILEEKAKLEVGKTHVVLVENRREMDNQIVGFEGRSDTGKFIEVT 407

Query: 442 -SKNHNIGDIIKVRITDVKISTLYG 465
             +  N G+++KV I       L  
Sbjct: 408 CKEKRNPGELVKVEIISHSKGRLMA 432


>gi|317181612|dbj|BAJ59396.1| putative ATP-binding protein [Helicobacter pylori F57]
          Length = 437

 Score =  376 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 143/449 (31%), Positives = 241/449 (53%), Gaps = 23/449 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + ++++ GC MN  DS  +        Y+  +    ADLI++NTC +REK   K++S +G
Sbjct: 2   KVYIETMGCAMNSRDSEHLLSELSKLDYKETSDPKAADLILINTCSVREKPERKLFSEIG 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           +   +K        +  + V GC A   G +IL+++P V+ V+G +   ++ +++ + + 
Sbjct: 62  QFAKIKK------PNAKIGVCGCTASHMGADILKKAPSVSFVLGARNVSKISQVIHKEKA 115

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            +  +D D S        +     + +K  + + L I  GCDK C +C+VP+TRG EIS 
Sbjct: 116 VEVAIDYDES--------AYAFEFFEKKAQIRSLLNISIGCDKKCAYCIVPHTRGKEISI 167

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL-DGEKCTFSDLLYSLSEIKGLVRLR 264
            +  ++ EA KL  NG  E+ LLGQNVN +  +   D  K  FSDLL  LSEI+G+ R+R
Sbjct: 168 PMDLILKEAEKLASNGTKELMLLGQNVNNYGARFSSDHAKVDFSDLLDKLSEIQGIERIR 227

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +T+ HP  M+D  ++       +   +H+P+QSGS  +LK M R ++   +   ++R+++
Sbjct: 228 FTSPHPLHMNDAFLERFAKNPKVCKSIHMPLQSGSSAVLKMMRRGYSKEWFLNRVERLKA 287

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           + P++ IS+D IVGFP E+D DF  TM++++K+ +   +SF YSPR  T      E+V  
Sbjct: 288 LVPEVGISTDIIVGFPNESDKDFEDTMEVLEKVHFDTLYSFIYSPRPFTEAGAWKERVPL 347

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV---GRSPWLQSVVLN 441
            V + RL  LQ + +E         VG+   VL+E   +   ++V   GRS   + + + 
Sbjct: 348 EVSSSRLERLQNRHKEILEEKAKLEVGKTHVVLVENGREIDNQIVGFEGRSDTGKFIEVA 407

Query: 442 -SKNHNIGDIIKVRITDVKISTLYGELVV 469
             +  N G+++KV I         G L+ 
Sbjct: 408 CKEKRNPGELVKVEIVSHS----KGRLIA 432


>gi|291543502|emb|CBL16611.1| SSU ribosomal protein S12P methylthiotransferase [Ruminococcus sp.
           18P13]
          Length = 447

 Score =  376 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 124/450 (27%), Positives = 219/450 (48%), Gaps = 17/450 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +  + S GC  N+ DS RM  +   +GYE V    DAD++V+NTC   + A E+    + 
Sbjct: 4   KVGMVSLGCAKNLVDSERMLHLIRQRGYELVTEPGDADVVVVNTCGFIQSAKEEAIDTIL 63

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +  LK      G    +++ GC+A+   +E     P V+ V+G     ++ ++++    
Sbjct: 64  ELCQLKAE----GSIRKIIMTGCLAERYRQEAADEFPEVDAVIGIGDQGQIIDVIDHVLA 119

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            +R+V     ++     + +            A+L I EGC+  CT+C +P  RG   S 
Sbjct: 120 NERMVHFCSKLD-----VPMSGRRVLSTLPFFAYLKIAEGCNNCCTYCAIPMIRGGFRSV 174

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            +  V++EAR L ++GV E+T++ Q+     G+ L GE     +LL  L  I+G+  +R 
Sbjct: 175 PMEDVLEEARWLTEHGVTELTVIAQDTT-RYGEDLYGE-SRLPELLEQLCRIQGIRWIRV 232

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
              +P  ++D L++     + L+ YL +P+Q  +  IL+ MNR+  A     ++++IR +
Sbjct: 233 LYCYPERITDKLLEVMAREEKLVKYLDIPIQHCNGDILRRMNRQGDAGTLAALLNKIRQM 292

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            PDI + +  I GFPGET+  F    + +    + +   F YS   GT  +   +QV E+
Sbjct: 293 IPDITLRTTLITGFPGETEAQFTELAEFIQAQRFDRLGCFAYSQEEGTRAAEFPDQVPED 352

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVL- 440
           V+  R   L ++ +      N+A +GQ+   +IE + +      GR+    P +   V  
Sbjct: 353 VRQHRADILMEQQQLIVEEKNNARLGQVCTAVIEGYDRWAECWFGRTAADAPDIDGKVFI 412

Query: 441 -NSKNHNIGDIIKVRITDVKISTLYGELVV 469
            +    +IGD + VR+ +V      GE+V 
Sbjct: 413 RSETPLHIGDYVTVRLDEVLDYDFVGEVVT 442


>gi|261839125|gb|ACX98890.1| hypothetical protein HPKB_0280 [Helicobacter pylori 52]
          Length = 437

 Score =  376 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 141/449 (31%), Positives = 241/449 (53%), Gaps = 23/449 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + ++++ GC MN  DS  +        Y+  +    ADLI++NTC +REK   K++S +G
Sbjct: 2   KVYIETMGCAMNSRDSEHLLSELSKLDYKETSDPKAADLILINTCSVREKPERKLFSEIG 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           +   +K        +  + V GC A   G +IL+++P V+ V+G +   ++ +++ + + 
Sbjct: 62  QFAKIKK------PNAKIGVCGCTASHMGADILKKAPSVSFVLGARNVSKISQVIHKEKA 115

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            +  +D D S        +     + +K  + + L I  GCDK C +C+VP+TRG EIS 
Sbjct: 116 VEVAIDYDES--------AYAFEFFEKKAQIRSLLNISIGCDKKCAYCIVPHTRGKEISI 167

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL-DGEKCTFSDLLYSLSEIKGLVRLR 264
            +  ++ EA KL  NG  E+ LLGQNVN +  +   +  K  FSDLL  LSEI+G+ R+R
Sbjct: 168 PMDLILKEAEKLASNGTKELMLLGQNVNNYGARFSSEHAKVDFSDLLDKLSEIQGIERIR 227

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +T+ HP  M+D  ++       +   +H+P+QSGS  +LK M R ++   +   ++R+++
Sbjct: 228 FTSPHPLHMNDAFLERFAKNPKVCKSIHMPLQSGSSAVLKMMRRGYSKEWFLNRVERLKA 287

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           + P++ IS+D IVGFP E+D DF  TM++++K+ +   +SF YSPR  T      E+V  
Sbjct: 288 LVPEVGISTDIIVGFPNESDKDFEDTMEVLEKVRFDTLYSFIYSPRPFTEAGAWKERVPL 347

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV---GRSPWLQSVVLN 441
            V + RL  LQ + +E         VG+   VL+E   +   ++V   GRS   + + + 
Sbjct: 348 EVSSSRLERLQNRHKEILEEKAKLEVGKTHVVLVENRREMDNQIVGFEGRSDTGKFIEVA 407

Query: 442 -SKNHNIGDIIKVRITDVKISTLYGELVV 469
             +  N G++++V I         G L+ 
Sbjct: 408 CKEKRNPGELVRVEIVSHS----KGRLIA 432


>gi|297379491|gb|ADI34378.1| RNA modification enzyme, MiaB family [Helicobacter pylori v225d]
          Length = 437

 Score =  376 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 141/449 (31%), Positives = 240/449 (53%), Gaps = 23/449 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + ++++ GC MN  DS  +        Y+  +    ADLI++NTC +REK   K++S +G
Sbjct: 2   KVYIETMGCAMNSRDSEHLLSELSKLDYKETSDPKAADLILINTCSVREKPERKLFSEIG 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           +   +K        +  + V GC A   G +IL+++P V+ V+G +   ++ +++ + + 
Sbjct: 62  QFAKIKK------PNAKIGVCGCTASHMGADILKKAPSVSFVLGARNVSKISQVIHKEKA 115

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            +  +D D S        +     + +K  + + L I  GCDK C +C+VP+TRG EIS 
Sbjct: 116 VEVAIDYDES--------AYAFEFFEKKAQIRSLLNISIGCDKKCAYCIVPHTRGKEISI 167

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL-DGEKCTFSDLLYSLSEIKGLVRLR 264
            +  ++ EA KL  NG  E+ LLGQNVN +  +   +  K  FSDLL  L EI+G+ R+R
Sbjct: 168 PMDLILKEAEKLASNGTKELMLLGQNVNNYGTRFSSEHAKVDFSDLLDKLGEIQGIERIR 227

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +T+ HP  MSD  ++       +   +H+P+QSGS  +LK M R ++   +   ++R+++
Sbjct: 228 FTSPHPLHMSDAFLERFAKNPKVCKSIHMPLQSGSSAVLKMMRRGYSKEWFLNRVERLKA 287

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           + P++ IS+D IVGFP E+D DF  TM++++K+ +   +SF YSPR  T      E+V  
Sbjct: 288 LVPEVGISTDIIVGFPNESDKDFEDTMEVLEKVRFDTLYSFIYSPRPFTEAGAWKERVPL 347

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV---GRSPWLQSVVLN 441
            V + RL  LQ + +E         VG+   VL+E   +   ++V   GRS   + + + 
Sbjct: 348 EVSSSRLERLQNRHKEILEEKAKLEVGKTHVVLVENRREIDNQIVGFEGRSDTGKFIEVA 407

Query: 442 -SKNHNIGDIIKVRITDVKISTLYGELVV 469
             +  N G++++V I         G L+ 
Sbjct: 408 CKEKRNPGELVRVEIVSHS----KGRLIA 432


>gi|254778972|ref|YP_003057077.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Helicobacter
           pylori B38]
 gi|254000883|emb|CAX28819.1| Putative tRNA-i(6)A37 modification enzyme MiaB [Helicobacter pylori
           B38]
          Length = 437

 Score =  376 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 142/449 (31%), Positives = 242/449 (53%), Gaps = 23/449 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + ++++ GC MN  DS  +        Y+  +    ADLI++NTC +REK   K++S +G
Sbjct: 2   KVYIETMGCAMNSRDSEHLLSELSKLDYKETSDPKTADLILINTCSVREKPERKLFSEIG 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           +   +K        +  + V GC A   G +IL+++P V+ V+G +   ++ +++ + + 
Sbjct: 62  QFAKIKK------PNAKIGVCGCTASHMGADILKKAPSVSFVLGARNVSKISQVIHKEKA 115

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            +  +D D S        +     + +K  + + L I  GCDK C +C+VP+TRG EIS 
Sbjct: 116 VEVAIDYDES--------AYAFEFFEKKAQIRSLLNISIGCDKKCAYCIVPHTRGKEISI 167

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL-DGEKCTFSDLLYSLSEIKGLVRLR 264
            +  ++ EA KL +NG  E+ LLGQNVN +  +   +  K  FSDLL  LSEI+G+ R+R
Sbjct: 168 PMDLILKEAEKLANNGTKELMLLGQNVNNYGARFSSEHAKVDFSDLLDKLSEIQGIERIR 227

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +T+ HP  M+D  ++       +   +H+P+QSGS  +LK M R ++   +   ++R+++
Sbjct: 228 FTSPHPLHMNDAFLERFAKNPKVCKSIHMPLQSGSSAVLKMMRRGYSKEWFLNRVERLKA 287

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           + P++ IS+D IVGFP E+D DF  TM++++K+ +   +SF YSPR  T      E+V  
Sbjct: 288 LVPEVGISTDIIVGFPNESDKDFEDTMEVLEKVRFDTLYSFIYSPRPFTEAGAWKERVPL 347

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV---GRSPWLQSVVLN 441
            V + RL  LQ + +E         VG+   VL+E   +   ++V   GRS   + + + 
Sbjct: 348 EVSSSRLERLQNRHKEILEEKAKLEVGKTHVVLVENRREMDNQIVGFEGRSDTGKFIEVT 407

Query: 442 -SKNHNIGDIIKVRITDVKISTLYGELVV 469
             +  N G+++KV I         G L+ 
Sbjct: 408 CKEKRNPGELVKVEIISHS----KGRLIA 432


>gi|238920449|ref|YP_002933964.1| ribosomal protein S12 methylthiotransferase [Edwardsiella ictaluri
           93-146]
 gi|238870018|gb|ACR69729.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
          Length = 441

 Score =  376 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 127/463 (27%), Positives = 213/463 (46%), Gaps = 35/463 (7%)

Query: 17  IVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA 76
           + +Q   P      S GC  N+ DS R+     ++GY  V + +DADL+++NTC   + A
Sbjct: 1   MSNQSRQP-TIGFVSLGCPKNLVDSERILTELRTEGYLVVPTYEDADLVIVNTCGFIDSA 59

Query: 77  AEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL 136
            ++    +G              +  V+V GC+  A+  +I    P V  + GP +Y ++
Sbjct: 60  VQESLEAIGEA---------LHENGKVIVTGCLG-AKENQIREVHPKVLEISGPHSYEQV 109

Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
              + +               + F  L + + G        A+L I EGC+  C FC++P
Sbjct: 110 LHHVHKY--------VAKPQHNPFTSL-VPEQGVKLTPKHFAYLKISEGCNHRCAFCIIP 160

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA------WRGKGLDGE--KCTFS 248
             RG   SRS+  V+DEA++L D+GV E+ ++ Q+  A       R    +G+  K +  
Sbjct: 161 SLRGDLESRSIGSVLDEAKRLADSGVRELLVISQDTAAYGADIQHRTGFWNGQPVKTSML 220

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
            L   L+ +   +RL Y   +P       + A G    L+PYL +P+Q  S RILK M R
Sbjct: 221 SLCEQLATLGVWIRLHYVYPYPHVDDVIPLMAQG---KLLPYLDIPLQHASPRILKLMKR 277

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
                   + I R R + P + + S FIVGFPGET++DF+  +D + +    +   F+YS
Sbjct: 278 PGAVERTLERIKRWREICPQLTLRSTFIVGFPGETEEDFQMLLDFLREARLDRVGCFQYS 337

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--G 426
           P  G   + + +QV + +K  R     +  ++         VG  + V+I++   E   G
Sbjct: 338 PVEGAAANELPDQVPDEIKQARFDRFMQLQQQISAERLQEKVGLTLPVIIDEVDGEGAIG 397

Query: 427 KLVGRSPWLQSVVLNSKN--HNIGDIIKVRITDVKISTLYGEL 467
           + +  +P +  VV  +       GDI+ V I +     ++G L
Sbjct: 398 RSMADAPEIDGVVYLNGERSVKPGDIVNVTIENADEYDMWGSL 440


>gi|190575308|ref|YP_001973153.1| ribosomal protein S12 methylthiotransferase [Stenotrophomonas
           maltophilia K279a]
 gi|238066609|sp|B2FP10|RIMO_STRMK RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|190013230|emb|CAQ46864.1| conserved hypothetical protein [Stenotrophomonas maltophilia K279a]
          Length = 453

 Score =  376 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 131/459 (28%), Positives = 211/459 (45%), Gaps = 41/459 (8%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC   + DS R+     S+GY+ V S D AD++V+NTC   + A  +    +G
Sbjct: 7   KVGFVSLGCPKALVDSERILTQLRSEGYDIVPSYDSADVVVVNTCGFIDSAVTESLDAIG 66

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                         +  V+V GC+ +   E+I    P V  V GPQ Y  + E +  A  
Sbjct: 67  EA---------MNQNGKVIVTGCLGKR-PEQIREAYPNVLAVSGPQDYQSVMEAVHEALP 116

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            K          D F  L + D G        A+L I EGC+  C+FC++P  RG  +SR
Sbjct: 117 PK---------HDPFVDL-VPDYGIKLTPRHYAYLKISEGCNHKCSFCIIPSMRGKLVSR 166

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK--------CTFSDLLYSLSEI 257
            + +V+ EA +L+  GV E+ ++ Q+ +A+       EK             L   LSE+
Sbjct: 167 PVDEVLREAERLVRGGVRELLVVSQDTSAYGVDVKYAEKMWRNKAYQTRLKALCEGLSEL 226

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
              VR+ Y   +P       + A    + ++PYL +P Q  S RIL+ M R     +  +
Sbjct: 227 DAWVRMHYVYPYPHVDEVVPLMA---ENRILPYLDIPFQHASPRILRLMKRPGAVEKTLE 283

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
            +   R + PDI + S FIVGFPGET+ +F   +  +D+    +  +F YSP  G   ++
Sbjct: 284 RVQNWRRIAPDITVRSTFIVGFPGETEAEFEELLSFLDEAQLDRVGAFAYSPVEGATAND 343

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----P 433
           + + V E VK ERL    +K  +   +  +A +G + + L++    E    V RS    P
Sbjct: 344 LPDAVPEEVKQERLARFMEKQAQISAARLEAKIGTVQQCLVDAI--EGDIAVARSKADAP 401

Query: 434 WLQS-VVLNSKN---HNIGDIIKVRITDVKISTLYGELV 468
            +   V + + +     +G+ + V IT+     LYG+ +
Sbjct: 402 EIDGLVHIQNADQVPLRVGEFVDVEITESDEHDLYGDAL 440


>gi|302874938|ref|YP_003843571.1| MiaB-like tRNA modifying enzyme YliG [Clostridium cellulovorans
           743B]
 gi|307690444|ref|ZP_07632890.1| MiaB-like tRNA modifying enzyme YliG [Clostridium cellulovorans
           743B]
 gi|302577795|gb|ADL51807.1| MiaB-like tRNA modifying enzyme YliG [Clostridium cellulovorans
           743B]
          Length = 445

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 129/449 (28%), Positives = 221/449 (49%), Gaps = 21/449 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +  + S GC  N  DS  +     S+GYE  N  ++AD+I++NTC   E + ++  + + 
Sbjct: 5   KVGLISLGCDKNRIDSEIILSKL-SEGYEITNEENEADIIIVNTCGFIETSKQESINAIL 63

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +   K +        ++V  GC+ Q  G E+L   P ++ ++G   Y RL   +E    
Sbjct: 64  EMAKYKTNY----SCKVLVATGCLTQRYGSELLELIPELDFILGVNDYDRLKSFIEEKIS 119

Query: 146 GKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
           G  +    +YS  +  E   I+  G       TA+L I EGC   C++C++P  RG   S
Sbjct: 120 GNTIETKINYSDSNINEGKRILTTGKQ-----TAYLRISEGCSNNCSYCIIPRIRGKYRS 174

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R+   ++ EA  L+ +GV E+ L+ Q+     G  +  +K    +LL  LS+IKG+  +R
Sbjct: 175 RTKESILKEAEDLVSSGVKELILVAQDTT-RYGIDIYNKKV-LHELLRDLSKIKGIKWIR 232

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
               +P ++ D LI    + +++  YL +P+Q  S+ IL++M RR      ++ I  ++ 
Sbjct: 233 ILYCYPEEIYDELIDEIANNEIICNYLDIPIQHISNNILRAMRRRTKKEIIKERISAMKE 292

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             P + + +  IVGFPGET++DF+   D V +I + +   FKYS    T  + +  Q+ +
Sbjct: 293 RIPSLILRTSIIVGFPGETEEDFQELKDFVKEIKFDKLGVFKYSQEEDTDAAKLGNQIPD 352

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVVL 440
            +K ER   L    +E     N   +G++ EV++E   K+     GR    SP +   V 
Sbjct: 353 EIKEEREKTLMLIQQEVSAEVNTNKIGRVYEVIVE--DKDVEYYYGRSFETSPEIDGEVF 410

Query: 441 --NSKNHNIGDIIKVRITDVKISTLYGEL 467
               ++  IG+ +KV+I D     L G +
Sbjct: 411 IKPDRDLKIGEFVKVKIVDSLEYDLIGVV 439


>gi|57168594|ref|ZP_00367727.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Campylobacter coli
           RM2228]
 gi|57020099|gb|EAL56776.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Campylobacter coli
           RM2228]
          Length = 419

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 155/435 (35%), Positives = 234/435 (53%), Gaps = 18/435 (4%)

Query: 36  MNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSR 94
           MNV DS  M         Y     + +ADLI++NTC +REK   K++S +G    +K S 
Sbjct: 1   MNVRDSEHMIAELTQKDNYTLTEDIKEADLILINTCSVREKPVHKLFSEVGGFEKVKKSG 60

Query: 95  IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDY 154
            K      + V GC A   G EI RR+P V+ V+G +   ++ + +   +F    VD DY
Sbjct: 61  AK------IGVCGCTASHLGSEIFRRAPYVDFVLGARNISKITQAVNTPKF--MSVDIDY 112

Query: 155 SVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEA 214
              +          G  R     +++ I  GCDK CT+C+VP+TRG EIS  L+ +  EA
Sbjct: 113 DESEFA-------FGDFRNSIYKSYINISIGCDKHCTYCIVPHTRGDEISIPLNIIYKEA 165

Query: 215 RKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
           +K +D G  EI LLGQNVN +  +  +  +K  FSDLL  LS I+GL R+R+T+ HP  M
Sbjct: 166 QKAVDKGAKEIFLLGQNVNNYGKRFRNEHKKMDFSDLLEELSTIEGLERIRFTSPHPLHM 225

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
            D  ++       +   +H+P+QSGS +ILK+M R +T   Y     ++R + P+++IS+
Sbjct: 226 DDKFLEVFAKNPKVCKSMHMPLQSGSSQILKAMKRGYTKEWYLDRALKLRELCPNVSIST 285

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLC 393
           D IV FPGE+D DF  TM++++K+ + Q FSFKYS R  T  + M  Q+DE + + RL  
Sbjct: 286 DIIVAFPGESDKDFEETMEVLEKVRFEQMFSFKYSKRPLTKAATMPNQIDEEIASNRLST 345

Query: 394 LQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKV 453
           LQ +  E           +  +VL E+  +    + GR+     V +      +G   +V
Sbjct: 346 LQARHNEILDDIVKKQENKTFKVLFEEL-RAGNAIAGRTDNNFLVQVEGSEELLGTFKEV 404

Query: 454 RITDVKISTLYGELV 468
           +IT+ K   LYGE++
Sbjct: 405 KITNAKRMVLYGEII 419


>gi|320528896|ref|ZP_08029988.1| MiaB-like tRNA modifying enzyme YliG [Selenomonas artemidis F0399]
 gi|320138526|gb|EFW30416.1| MiaB-like tRNA modifying enzyme YliG [Selenomonas artemidis F0399]
          Length = 442

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 141/453 (31%), Positives = 225/453 (49%), Gaps = 23/453 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC  N+ D+  M  +    G E      +AD++++NTC   + A E+  + + 
Sbjct: 2   KAGFISLGCAKNLVDTEVMLGIMREHGIELTAEPAEADILIVNTCAFIQSAKEESITTVL 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            + + K      G    ++VAGC+ Q  G+++L   P  N ++G   + R+ E++E    
Sbjct: 62  GMADYKE----TGRCRSLIVAGCLGQRYGQQLLDEIPEANAIIGTGAWSRIMEVVEETLK 117

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKR---GVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           G+R+V          E  +I D    R R     TA++ I EGCD  C FC +P  RG  
Sbjct: 118 GRRLVIAG-------EDDTIYDANTPRLRTTPNYTAYVKIAEGCDHRCAFCAIPLIRGGF 170

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR++  +V EAR+L ++GV E+ L+ Q+ +A  G  L   K   + LL  L++I+ +  
Sbjct: 171 RSRAMEDIVSEARELAESGVRELVLIAQD-SANYGLDLY-RKPMLASLLRELAKIEKISW 228

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R   S+P+  SD LI+       ++ Y+ LP+Q   D +L+SMNR  T     ++I ++
Sbjct: 229 IRVLYSYPKYFSDELIEVFATEPKVVKYVDLPLQHAHDAVLRSMNRPDTRAGIERLIQKL 288

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R   P + I S FIVGFPGETD  ++A  D V+   + +   F YS    TP S M ++V
Sbjct: 289 RERIPGVTIRSTFIVGFPGETDTHYQALRDFVEAQRFDKLGIFTYSEEEDTPASLMRQKV 348

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKH-GKEKGKLVGRS----PWLQS 437
            E V  ER   L     +     N +   + I+VLIE    +++G  VGRS    P +  
Sbjct: 349 PEEVMQERYHDLMSLQSKISEEINISLENKEIDVLIEGRDSEQQGIAVGRSYREAPEVDG 408

Query: 438 VVLNSKNHN--IGDIIKVRITDVKISTLYGELV 468
            +    +    IGDI++VR+       + GE V
Sbjct: 409 QIYIEGDVGSCIGDIVRVRLLQGFTYDIVGEKV 441


>gi|152978089|ref|YP_001343718.1| MiaB-like tRNA modifying enzyme YliG [Actinobacillus succinogenes
           130Z]
 gi|238065279|sp|A6VLD6|RIMO_ACTSZ RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|150839812|gb|ABR73783.1| MiaB-like tRNA modifying enzyme YliG [Actinobacillus succinogenes
           130Z]
          Length = 444

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 128/455 (28%), Positives = 211/455 (46%), Gaps = 40/455 (8%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
             S GC  N+ DS R+     S GY  + + ++ADL+++NTC   + A ++    +G   
Sbjct: 10  FVSLGCPKNLVDSERILTELRSDGYNIIPTYENADLVIVNTCGFIDSAVQESLEAIGEAL 69

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
                         V+V GC+  A+ + I    P V  + GP +Y  + E + +      
Sbjct: 70  EANGK---------VLVTGCLG-AKEDRIREVHPKVLEITGPHSYEAVMEHVHKY----- 114

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
                           +   G        A+L I EGCD  CTFC++P  RG   SR ++
Sbjct: 115 ----VPKPAYNPYINVVPSQGVKLTPKHYAYLKISEGCDHKCTFCIIPSLRGDLDSRPIT 170

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAW----------RGKGLDGE--KCTFSDLLYSLSE 256
           Q++DEA++L D+GV E+ ++ Q+ +A+          +    +G   K     L   L  
Sbjct: 171 QILDEAKRLADSGVKELLVVSQDTSAYSLDQSKETQNKTVFWNGIPIKNNLITLCQMLGT 230

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           +   VRL Y   +P       + A G    ++PYL +P+Q  S +ILK+M R  +     
Sbjct: 231 LGVWVRLHYVYPYPHVDDLIPLMAAG---KILPYLDIPLQHASPKILKAMKRPGSVERVL 287

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
           + I   R + P++ + S FIVGFPGET++DF+  +D + +    +   FK+SP  G   +
Sbjct: 288 ERIKNWREICPELTLRSTFIVGFPGETEEDFQLLLDFLKEAQLDRVGCFKFSPVDGATAT 347

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPW 434
           +M +QV E VK ER     +  +E   +     +G+  +V++++  +E   G+ +  +P 
Sbjct: 348 DMPDQVPEEVKEERFQRFMQLQQEISAARLQQKIGKTWKVIVDEIDEEGIIGRSMADAPE 407

Query: 435 LQSVVLNS----KNHNIGDIIKVRITDVKISTLYG 465
           +  VV           IGDII VRIT      L+G
Sbjct: 408 IDGVVYVDNVGQSAVRIGDIIDVRITRADEYDLWG 442


>gi|256819862|ref|YP_003141141.1| MiaB-like tRNA modifying enzyme YliG [Capnocytophaga ochracea DSM
           7271]
 gi|256581445|gb|ACU92580.1| MiaB-like tRNA modifying enzyme YliG [Capnocytophaga ochracea DSM
           7271]
          Length = 433

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 129/458 (28%), Positives = 213/458 (46%), Gaps = 33/458 (7%)

Query: 17  IVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA 76
           +  + I      V + GC  NVYDS  +     + G E V+     +++V+NTC     A
Sbjct: 1   MRTRSIKKNTINVVTLGCSKNVYDSEVLMGQLKAGGKEVVH-EQKGNIVVINTCGFINNA 59

Query: 77  AEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL 136
            E+  + +      K +    G    V V GC+++    ++ +  P V+   G       
Sbjct: 60  KEESINTILDYVQQKEA----GLVDKVFVMGCLSERYKPDLEKEIPDVDQYFGTSEL--- 112

Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
           P LL       +V+  DY  E   ERL+     Y       A+L I EGCD+ C+FC +P
Sbjct: 113 PALL-------KVLGADYKHELIGERLTTTPKNY-------AYLKISEGCDRPCSFCAIP 158

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256
             RG  +S  +  +V EA KL   GV E+ L+ Q++  + G  L  +K   +DLL +L +
Sbjct: 159 LMRGAHLSTPIEALVTEAEKLAAKGVKELILIAQDIT-YYGLDLY-KKRALADLLRALVK 216

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           ++G+  +R   + P      +++       +  YL +P+Q  SD IL SM R  T  +  
Sbjct: 217 VEGIEWIRIHYAFPTGFPMDVLEVMKTEPKICNYLDIPLQHISDSILASMKRGTTQAKTT 276

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
           +++ + R   P++AI +  IVG+PGET++DF+   D V ++ + +   F YS    T   
Sbjct: 277 KLLKKFREAIPEMAIRTTLIVGYPGETEEDFQKLKDFVKEMRFDRLGCFTYSHEENTTAY 336

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQ 436
            + + V E VK  R   + +   +     N   VG+    LI++  KE    VGR+ +  
Sbjct: 337 ALEDDVPEEVKLARANEIMEIQSQISWELNQEKVGKTFRCLIDR--KEGNYFVGRTEYDS 394

Query: 437 S-----VVLNSKNH--NIGDIIKVRITDVKISTLYGEL 467
                 V++++K H   IGD   ++I +     LYGE 
Sbjct: 395 PDVDNEVLIDAKKHYVKIGDFTDIKIIEATDYDLYGEP 432


>gi|206901571|ref|YP_002251173.1| hypothetical protein DICTH_1354 [Dictyoglomus thermophilum H-6-12]
 gi|238065337|sp|B5YF65|RIMO_DICT6 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|206740674|gb|ACI19732.1| conserved hypothetical protein [Dictyoglomus thermophilum H-6-12]
          Length = 440

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 122/452 (26%), Positives = 211/452 (46%), Gaps = 21/452 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++  +   GC  N  D+  +       GY     + +ADL+++NTC   + A ++    +
Sbjct: 2   KKAGIIHLGCSKNQVDTEILMGFLKELGYTFTPYLGEADLVLVNTCAFIKPAWQEAEENI 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             ++  K +      +L +VV GC  +   +E+  R P V++ +GP  Y +   L+    
Sbjct: 62  NFLKEYKEN----NKNLKIVVTGCYVERFEKELEDRYPFVDLFIGPGEYDKFVSLI--TS 115

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G+R + +  +    +                  ++ I EGC+ FC++C +P+ RG   S
Sbjct: 116 NGERKIHSSPASSFMYTHKMPRVLISP---NFWVYVKISEGCNNFCSYCTIPFIRGRLRS 172

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           RS+  ++ E   L+  GV EI L+ Q+     G+ L G K    DLL S+  IKG   +R
Sbjct: 173 RSIDDIIKEVEILVQKGVKEINLIAQDTT-RYGEDLYG-KSALVDLLKSIENIKGDFYVR 230

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
              S+P  ++  LI      + ++PY  +P+Q  +D ILK MNR +   +  ++   IR 
Sbjct: 231 ILYSYPSRVTKDLINFIKVSEKVVPYFDIPIQHVNDEILKKMNRSYKKDDIIRVWSTIRE 290

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
              D  I +  +VGFPGET+++F   +  +    + +  +F Y    GT   N   Q+DE
Sbjct: 291 NFEDAVIRTTVMVGFPGETEENFEELIAFIKAYPFDRLGAFTYYNEEGTISKNFDGQIDE 350

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVL 440
           + K  R   L    +E     N   +G+  +V+IE   ++    +GRS    P +  V++
Sbjct: 351 DEKIRRYDILMSTQKEISKKLNAKLLGREFDVIIE--NEKGKYFIGRSWREAPEVDGVIM 408

Query: 441 NSKNH----NIGDIIKVRITDVKISTLYGELV 468
             K      +IGD ++V+I   +   L GELV
Sbjct: 409 IPKEGSRSISIGDRVRVKIKKYRAYDLLGELV 440


>gi|220929654|ref|YP_002506563.1| RNA modification enzyme, MiaB family [Clostridium cellulolyticum
           H10]
 gi|219999982|gb|ACL76583.1| RNA modification enzyme, MiaB family [Clostridium cellulolyticum
           H10]
          Length = 454

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 131/448 (29%), Positives = 239/448 (53%), Gaps = 18/448 (4%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
            +     + GC++N Y+S  +  +F   GYE V+   D+D+ ++NTC +   +  K    
Sbjct: 22  KKTVSFHTLGCKVNQYESEAVSSIFEKNGYEVVSFEQDSDVYIINTCTVTNLSDRKSRQA 81

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           + + +       K   + +V+V GC AQ   EE+L + P V++V+G +   R+ E +ER 
Sbjct: 82  IRKAK-------KTNPNSIVIVMGCYAQTSSEEVL-KIPGVDMVIGTKDRSRIIEYVERI 133

Query: 144 RFGKRVVDT--DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
             G+  ++   +  V   FE L +       K    A+L IQEGC +FC++C++PY RG 
Sbjct: 134 ESGECRINAVDNIMVSGTFEELKLSTY----KERTRAYLKIQEGCSQFCSYCIIPYARGP 189

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
             SR    +++E + L ++G  EI L G ++ ++   G + +     D++     I G+ 
Sbjct: 190 IRSRKPDDIIEEVKHLAESGFLEIVLTGIHLASF---GREIKDTNLLDIIKKTHSIDGIK 246

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R  +  P  +++  + A G L  L P+ HL +QSG D+ L  MNR++   EYR+ ++ 
Sbjct: 247 RIRLGSLEPTTITEEFVDAVGRLPKLCPHFHLSLQSGCDKTLAEMNRKYRTDEYRKSVEL 306

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +++  PD+AI++D +VGFPGET++DF  + D  ++IG+++   FKYSPR GTP + M  Q
Sbjct: 307 LKNNIPDVAITTDLMVGFPGETEEDFLMSRDFAEEIGFSKIHVFKYSPRKGTPAAVMKNQ 366

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVL 440
           +    K  R   +     E +  + +  VG+ +EVL E+  + ++G + G +     V+ 
Sbjct: 367 IGPEEKERRSEIMLDLSDELEKKYMEGFVGRNMEVLYEQEMQGKEGYIEGLTKNYIRVMA 426

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
              ++  G +++ ++  V  +   G ++
Sbjct: 427 KGDSNLKGKLMETKLYKVNGTLFEGNII 454


>gi|312130731|ref|YP_003998071.1| ssu ribosomal protein s12p methylthiotransferase [Leadbetterella
           byssophila DSM 17132]
 gi|311907277|gb|ADQ17718.1| SSU ribosomal protein S12P methylthiotransferase [Leadbetterella
           byssophila DSM 17132]
          Length = 436

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 128/452 (28%), Positives = 211/452 (46%), Gaps = 33/452 (7%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNS--MDDADLIVLNTCHIREKAAEKVYSF 83
           +  + + GC  N+ DS  +       G +  +    DD+ ++V+NTC   + A ++    
Sbjct: 10  KINIVTLGCSKNLVDSEMLYTQLRGNGMDVSHESPEDDSQIVVINTCGFIDNAKQESIDT 69

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           + R  + K S    G    V V GC++    +E+    P V+   G     RL + L+  
Sbjct: 70  ILRYVDAKES----GIVEKVYVTGCLSHRYKDELEVEIPQVDSWFGTNELPRLLKTLK-- 123

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
                    DY  E   ERL      Y       A++ I EGCD+ C+FC +P  RG  +
Sbjct: 124 --------ADYKHELIGERLLTTPSHY-------AYMKIAEGCDRPCSFCAIPLMRGSHV 168

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR + ++V  A+ ++  G  E+ L+ Q++  + G  L  +K   S+LL  LS+++GL  +
Sbjct: 169 SRPMDELVLSAKNMVAKGTKELILIAQDLT-YYGLDLY-KKRNLSELLARLSDVEGLDWI 226

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R   ++P      +++   +   +  YL +P+Q GS  +LK M R     +  ++++ IR
Sbjct: 227 RLQYAYPAGFPMDILEVMAERTNICKYLDMPLQHGSSEMLKKMRRGIDRPKTEKLLETIR 286

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              P I + +  IVG PGET+D F      V+   + +   F+YS    T   + ++ V 
Sbjct: 287 EKVPGIHLRTTLIVGHPGETEDMFEEMYRFVESQKFDRLGVFQYSHEEQTHSYSFVDDVP 346

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVV 439
             VK ER   + +  +      N A VGQ+ +VL++K  KE G  VGR+    P + + V
Sbjct: 347 AEVKQERADIIMELQQGISEERNKAKVGQVFKVLVDK--KESGHFVGRTEFDSPEVDNEV 404

Query: 440 LNSKNH--NIGDIIKVRITDVKISTLYGELVV 469
           L    H   IGD  +VRI       LYG  +V
Sbjct: 405 LIPAEHYVRIGDFTQVRIDSATEFDLYGTPIV 436


>gi|313899567|ref|ZP_07833076.1| ribosomal protein S12 methylthiotransferase RimO [Clostridium sp.
           HGF2]
 gi|312955674|gb|EFR37333.1| ribosomal protein S12 methylthiotransferase RimO [Clostridium sp.
           HGF2]
          Length = 433

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 138/447 (30%), Positives = 213/447 (47%), Gaps = 26/447 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC  N+ DS +M  M  S G+E V++ D+A+ I++NTC     A E+    + 
Sbjct: 2   KIGFISLGCSKNLVDSEKMMGMINSGGHELVHNADEAEAIIINTCGFINSAKEEAIQTIF 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           ++   K           ++V GC+AQ   E++ +  P ++ V+  + Y  L ELL +   
Sbjct: 62  QMAEYKK-----HRCRKLIVVGCLAQRYKEQLEQDIPEIDAVISIREYPHLHELLPKLLD 116

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G  +V  D                    +  TA+L I EGC   CT+C +P  RG  +S 
Sbjct: 117 GHDLVSYDK------------CERKVSSKPWTAYLKIAEGCSNHCTYCAIPLIRGDNVSF 164

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            + Q+V+EA++L   GV E+ ++ Q+     G  L G +    DLL  L EI+G   +R 
Sbjct: 165 PIEQLVEEAKQLAQRGVRELVVIAQDTT-KYGVDLYGRRALL-DLLQQLHEIEGFHWIRI 222

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
              +P ++   LI+    L  ++PY  +P+Q  S+R+L+ MNRR +  E   ++ +IR  
Sbjct: 223 LYMYPDEIDARLIEGMAKLPKVLPYFDIPMQHASNRMLQLMNRRGSREEVAALVKKIRET 282

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
                + + FIVGFP E + DF   M  V+ I + +  +F YSP   TP  +M   VDE+
Sbjct: 283 FSYPTLRTTFIVGFPTEEEADFSELMQFVEDIHWDRMGAFPYSPEEDTPAYSMDGAVDED 342

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS-----PWLQSVVL 440
           VK  RL  L K+  E  +      VG+IIEVL+E      G   GR        +  +V+
Sbjct: 343 VKEARLAQLMKRQEEISLENQRRMVGEIIEVLVEDQEGLTGVYRGRGASSAPDEVDGIVM 402

Query: 441 NSKNHNI--GDIIKVRITDVKISTLYG 465
                 I  G  +KVRIT        G
Sbjct: 403 FKSERFIEFGSFVKVRITVALPHDFKG 429


>gi|254519873|ref|ZP_05131929.1| predicted protein [Clostridium sp. 7_2_43FAA]
 gi|226913622|gb|EEH98823.1| predicted protein [Clostridium sp. 7_2_43FAA]
          Length = 434

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 139/438 (31%), Positives = 238/438 (54%), Gaps = 18/438 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    + GC++NVY+S  M + F  +GYE V++ + AD+ V+NTC +     +K    + 
Sbjct: 2   KVAFSTLGCRVNVYESEAMAEKFIREGYEVVDASEAADVYVINTCTVTNMGDKKSRQIIS 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR- 144
           R R L         +  V V GC +Q   +E+    P V+VV+G +    +   + +AR 
Sbjct: 62  RARRL-------NENATVAVVGCYSQIAPKEV-SEIPGVDVVLGTRNKGDVVYYVNKARD 113

Query: 145 FGKRVVDTDYSVEDK-FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            GK  V  +  +++K FE L+I +     +    AFL IQ+GC++FCT+C++PY+RG   
Sbjct: 114 EGKSQVHVEGVLKNKKFEELNIEEY----QDKTRAFLKIQDGCNRFCTYCIIPYSRGSVC 169

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           S+   +V++E  KL ++G  EI L G +  A  G  L+G      D++  + +++G+ R+
Sbjct: 170 SKDPKKVLEEVNKLAEHGFKEIILSGIHT-ASYGLDLEGS-VNLIDIIEEIEKVEGIERI 227

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R  +  P   +  +I+       L P+ HL +QSG D  LK MNRR+TA EY   ++ +R
Sbjct: 228 RIGSIEPAFFTPEVIEKIKKFKKLCPHFHLSLQSGCDATLKRMNRRYTAKEYADSVNLLR 287

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              PD++I++D IVGFPGET+++F  T + +  I   +   FKYSPR GT  ++M +Q+D
Sbjct: 288 ETMPDVSITTDVIVGFPGETEEEFNETYEFLKNIKLTKTHVFKYSPRKGTKAADMQDQLD 347

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVLNS 442
            ++K +R   L +   + +  F +  +G+ ++ LIE   K + G   G +     V +  
Sbjct: 348 GSIKEKRSKLLIELSNKNEKEFIEKFIGKEMDALIEAEVKGKDGIYEGYTRNYIKVQVPC 407

Query: 443 KNHNI-GDIIKVRITDVK 459
              ++ G I+ + IT+ +
Sbjct: 408 TCADVTGKIVDIEITEAE 425


>gi|219848510|ref|YP_002462943.1| MiaB-like tRNA modifying enzyme YliG [Chloroflexus aggregans DSM
           9485]
 gi|219542769|gb|ACL24507.1| MiaB-like tRNA modifying enzyme YliG [Chloroflexus aggregans DSM
           9485]
          Length = 456

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 124/464 (26%), Positives = 215/464 (46%), Gaps = 29/464 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           ++ + + GC  N  DS  M+ +  ++G++ V S D+AD+I++NTC     A  +    L 
Sbjct: 2   KYHIVTLGCPKNAVDSEGMDGLLSAEGHQAVTSADEADVIIVNTCSFIAAARAETLGVLQ 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +   K           ++ AGC+AQ+   E++     V+  VG Q + ++  ++ +   
Sbjct: 62  ALAERKR------PGQRLIAAGCMAQSHPAEVMGVQ-GVDGTVGTQQWTQIGAVVNQPAQ 114

Query: 146 GKRVVDTDYSVEDKF--------ERLSIVDGG----YNRKRGVTAFLTIQEGCDKFCTFC 193
               +                  + +S  D         +   +A+L I +GC+  C FC
Sbjct: 115 PVIPLTVTQPTHTIPLTPTTNGAQPVSYADWRTTQIRRTRHTPSAYLKISDGCNLRCAFC 174

Query: 194 VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS 253
            +P  +G   S+ +  V+ EA++L+  GV EI L+ Q++    G+ L G +   + LL  
Sbjct: 175 TIPSFKGDMRSKPVGAVLAEAQELVAQGVREIVLVAQHLT-DYGRDL-GLRDGLAILLDE 232

Query: 254 LSEI-KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
           L ++    + +R   ++P  +S+ LI        +  YL +P+Q      L+ M R    
Sbjct: 233 LCQVTPSDIWIRLMYAYPHGISERLIATMASHPQICHYLDMPLQHAHPATLRRMRRPPDT 292

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
               ++I  +RS  PDIAI S FIVG+PGET  +F A ++ +      +  +F+YS   G
Sbjct: 293 DRTLRLIAELRSAMPDIAIRSTFIVGYPGETTAEFNALIEFLHTAQLDRVGAFRYSREPG 352

Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGK--LV 429
           TP + +  QV  +V   R   L +  +    + N   VG+ + VLIE +G  + G+   V
Sbjct: 353 TPAAELPAQVRPHVIERRWHELMRVQQMISRARNQRWVGRTLTVLIEGNGATDDGQPLSV 412

Query: 430 GRS----PWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
           GRS    P +   V     H IG ++ VR+       L+GE+ V
Sbjct: 413 GRSFRDAPEIDGQVFVWGTHPIGSMVSVRVMQATDYDLWGEVAV 456


>gi|330504051|ref|YP_004380920.1| ribosomal protein S12 methylthiotransferase [Pseudomonas mendocina
           NK-01]
 gi|328918337|gb|AEB59168.1| ribosomal protein S12 methylthiotransferase [Pseudomonas mendocina
           NK-01]
          Length = 440

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 134/461 (29%), Positives = 212/461 (45%), Gaps = 36/461 (7%)

Query: 21  CIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKV 80
              P+  FV S GC     DS R+      +GYE V +  DAD++V+NTC   + A  + 
Sbjct: 3   TATPKVGFV-SLGCPKATVDSERILTQLRMEGYEIVPTYQDADVVVVNTCGFIDSAKAES 61

Query: 81  YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140
              +G                 V+V GC+  AE + I    P V  V GPQ Y ++   +
Sbjct: 62  LDAIGEALAENGK---------VIVTGCMGVAE-DSIRDVHPSVLAVTGPQQYEQVVNAV 111

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
                           E       +   G        A+L I EGC+  C+FC++P  RG
Sbjct: 112 HEV--------IPPKTEHNPLIDLVPPQGIKLTPRHYAYLKISEGCNHTCSFCIIPSMRG 163

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE---------KCTFSDLL 251
             +SR +  V+ EA +L+  GV E+ ++ Q+ +A  G  L  +         K    +L 
Sbjct: 164 KLVSRPVGDVLSEAERLVKAGVKELLVISQDTSA-YGVDLKYKLDFWNGQPVKTRMLELC 222

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
            +LS +   VRL Y   +P       + A G    L+PYL +P Q  S ++LKSM R   
Sbjct: 223 ETLSSMGVWVRLHYVYPYPNVDDVIPLMAAG---KLLPYLDIPFQHASPKVLKSMKRPAF 279

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
             +    I + R + P++ I S FIVGFPGET++DF+  +D + +    +   F+YSP  
Sbjct: 280 EDKTLARIKKWREICPELTIRSTFIVGFPGETEEDFQYLLDWLTEAQLDRVGCFQYSPVE 339

Query: 372 GTPGSNM-LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKL 428
           G P +++ LE V ++VK ER        +    +   A +G  ++VL+++   E    + 
Sbjct: 340 GAPANDLGLEPVPDDVKQERWERFMAHQQAISSARLQAKIGLEMDVLVDEVDGEGAVARS 399

Query: 429 VGRSPWLQS-VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
              +P +   V ++S +   GD ++VRI D     ++GELV
Sbjct: 400 WADAPEIDGSVFIDSTSVKPGDKVRVRIVDADEYDMWGELV 440


>gi|238926969|ref|ZP_04658729.1| 2-methylthioadenine synthetase [Selenomonas flueggei ATCC 43531]
 gi|238885203|gb|EEQ48841.1| 2-methylthioadenine synthetase [Selenomonas flueggei ATCC 43531]
          Length = 442

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 132/450 (29%), Positives = 218/450 (48%), Gaps = 17/450 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC  N+ D+  M  +    G +  N   +AD++++NTC   + A E+  + + 
Sbjct: 2   KAGFISLGCAKNLVDTEVMLGIMREHGIDITNEPSEADILIVNTCAFIQSAKEESITTVL 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            + + K      G    ++VAGC+ Q  G+++L   P  + ++G   + R+ E++E    
Sbjct: 62  GMADYKE----TGRCRSLIVAGCLGQRYGQQLLDEIPEADAIIGTGAWSRIMEVIEETLK 117

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G+R++      +D                  TA++ I EGCD  C FC +P  RG   SR
Sbjct: 118 GRRLLIAG--KDDTIYDAKTPR--LRTTPHYTAYVKIAEGCDHRCAFCAIPLIRGGFRSR 173

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            +  +V E ++L +NGV E+ L+ Q+ +A  G     E      LL +L++I G+  +R 
Sbjct: 174 PMEDIVAEGQELAENGVRELVLIAQD-SANYGLDRYHEPM-LPMLLRALAKIDGIAWIRV 231

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
             S+P+  +D LI+       ++ Y+ LP+Q   D +L+SMNR  T  +  ++I ++R+ 
Sbjct: 232 LYSYPKYFTDELIEVFATEPKVVKYVDLPLQHAHDAVLRSMNRPDTRADIEKLIGKLRTR 291

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P +AI S FIVGFPGETD  ++     V+K  + +   F YS    TP + M ++V E 
Sbjct: 292 IPGVAIRSTFIVGFPGETDAQYQTLRRFVEKQRFDKVGIFTYSEEEDTPAAAMGKKVSEE 351

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRS----PWLQS-VV 439
           V  ER   L     +     N     Q ++VLIE H  E  G  VGRS    P +   + 
Sbjct: 352 VMQERYHDLMSLQSKISEEINIGLERQELDVLIEGHDAEQSGIAVGRSYREAPEVDGQIY 411

Query: 440 LNSK-NHNIGDIIKVRITDVKISTLYGELV 468
           +        G+I++VR+       + GE V
Sbjct: 412 IEGDAESAPGEIVRVRLLQGFTYDIVGERV 441


>gi|313888926|ref|ZP_07822586.1| tRNA methylthiotransferase YqeV [Peptoniphilus harei
           ACS-146-V-Sch2b]
 gi|312845099|gb|EFR32500.1| tRNA methylthiotransferase YqeV [Peptoniphilus harei
           ACS-146-V-Sch2b]
          Length = 432

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 132/438 (30%), Positives = 228/438 (52%), Gaps = 15/438 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + + F + + GC++N Y+S  M ++F S+GY +V + D +D+ ++NTC +   +  K   
Sbjct: 1   MEKTFSILTLGCKVNQYESEAMSELFESRGYRQVENDDFSDVYIVNTCTVTNLSDRKSRQ 60

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
           F+           K   + +V V GC +Q   EE+      V+VVVG     R+ +L+E 
Sbjct: 61  FIR-------KSKKNNPNSVVAVVGCYSQVSPEEVKS-IEGVDVVVGTTDRNRIVDLIEE 112

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           ++     ++    +++  E  +     ++      A++ +Q+GC++FCT+C++P+ RG  
Sbjct: 113 SKKNNEKINIVKDLKNVREFANTT--NFDSNNRTRAYMKVQDGCNRFCTYCIIPFARGPI 170

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR++   V EAR L D G  EI L G ++ ++   G+D       DL+ +++E+ G+ R
Sbjct: 171 RSRTIEDSVREARTLADRGFKEIVLTGIHIGSF---GMDLGDMRLIDLIEAIAEVDGIER 227

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R ++  P  ++D  ++       L  + HL +QSGS+ ILK+MNRR+T  +Y +  + I
Sbjct: 228 IRLSSVEPIIITDDFMERAVKTGKLCDHFHLSLQSGSNNILKAMNRRYTREDYIEKANII 287

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+  P   +++D IVGFPGE+ +DF  +M +V ++G+++   FKYS R  T  + M  Q+
Sbjct: 288 RNYMPHAGLTADIIVGFPGESQEDFEDSMKIVKEVGFSRIHVFKYSKRKNTKAAVMKNQI 347

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
           D NVK ER   L     E Q  F    +     VL E+  +  G   G +     V   S
Sbjct: 348 DGNVKKERSEKLIALGEEYQEIFERENMKTTQSVLFEE--EHDGVYYGYTTNYIRVKAKS 405

Query: 443 KNHNIGDIIKVRITDVKI 460
           +      I KV+I D   
Sbjct: 406 EEDLTNKIKKVKILDTGE 423


>gi|268609957|ref|ZP_06143684.1| MiaB-like tRNA modifying enzyme YliG [Ruminococcus flavefaciens
           FD-1]
          Length = 443

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 120/449 (26%), Positives = 201/449 (44%), Gaps = 17/449 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +  + S GC  N+ DS RM     S GY+ V     AD+ V+NTC   + A E+    + 
Sbjct: 4   KVGMVSLGCSKNLVDSERMLYKLKSHGYQLVTEPGLADVAVVNTCGFIKSAKEEAIETIL 63

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +  LK      G    +++ GC+ +   EE   + P  + V+G      + ++L+    
Sbjct: 64  ELGKLKEE----GTLKKIIITGCLVERYKEEAAEQFPEADAVIGIGNTKDIVDVLDHVLA 119

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            +R V     ++ +     I+            +L + EGC   CT+C +P  RG   S 
Sbjct: 120 NERYVCFAPKLDAELSGERIIS-----TLPFFTYLKVAEGCSNCCTYCAIPLIRGKFRSV 174

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            +  V+ EAR L +NGV E+ ++ Q+  A  GK L GE    ++LL  L  I GL  +R 
Sbjct: 175 PMEDVLKEARFLAENGVTELVVIAQDT-ALYGKDLYGEPK-LAELLTELCRIDGLKWIRT 232

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
              +P  ++D L+      D ++ Y+ +P+Q  +  IL  MNR     +   +   IR  
Sbjct: 233 LYCYPERITDELLDVIAREDKIVKYMEIPIQHCNGDILSRMNRWGDTEKLEALFRHIREK 292

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P + + +  I GFPGET++ F    + V ++ + +   F YS   GT  +   +Q+DE 
Sbjct: 293 VPGVILRTTLITGFPGETEEQFNELAEFVKRVRFDRLGCFPYSREEGTKAAEFPDQIDEE 352

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVL- 440
             A R   + ++        N+  +G  +E ++E   K      GR+    P +   V  
Sbjct: 353 TAAHRADIIMEQQMLISCENNEKLMGCELEAVVEGFDKFGECYFGRTPLDAPDIDGKVFF 412

Query: 441 -NSKNHNIGDIIKVRITDVKISTLYGELV 468
            +     IG  + +RITD     L GE++
Sbjct: 413 TSDDPLEIGQYVTIRITDTLDYDLIGEVI 441


>gi|282855982|ref|ZP_06265273.1| ribosomal protein S12 methylthiotransferase RimO [Pyramidobacter
           piscolens W5455]
 gi|282586201|gb|EFB91478.1| ribosomal protein S12 methylthiotransferase RimO [Pyramidobacter
           piscolens W5455]
          Length = 434

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 130/450 (28%), Positives = 209/450 (46%), Gaps = 25/450 (5%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +   + S GC  N  DS  +  +  + G+  V S ++AD+ ++NTC   + A E+    +
Sbjct: 2   KNLHIISLGCPKNAVDSEHLGGVLEAAGFRLVGSAEEADVALVNTCGFLQAAVEEGIQVI 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             +  LK    K G    + V GC+    G+E+    P V+     + +     LL    
Sbjct: 62  LDLERLK----KAGVVRQIAVVGCMLNRYGDELKAEFPTVDFWAKSEDWGA---LLREMG 114

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G        + E    R  +    + R      +L I EGC+  C++C +P  RG   S
Sbjct: 115 RG-----VPAAAESGCLRADLAGTPWTR------YLKISEGCNSRCSYCAIPGIRGRLRS 163

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
             + Q+V EAR+L+D G  E+ L+GQ + +  G  L G       L     E+   V LR
Sbjct: 164 VPVEQIVGEARRLVDEGAKELCLVGQEL-SIYGSDLFGRPSLPRLLDELEKELPRGVWLR 222

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
               HP  +    ++      V++P+L +P+Q   D +L+ MNR       R++  R R 
Sbjct: 223 LFYLHPSLVDAVFLERVAASPVILPWLDIPIQHVDDDVLRRMNRPPVERHIRELFARGRE 282

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           + PD A  +  +VGFPGET   F   +D V++IG+ +  +F YSP  GTP ++  +Q+ E
Sbjct: 283 INPDFAFRTTLMVGFPGETRAQFDKLLDFVEEIGFDRLGAFPYSPEDGTPAASFPDQIPE 342

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVL 440
             K  R   L +  R+  ++     VG  + VLI++  +E G+ VGRS    P +  VV 
Sbjct: 343 EEKTARYNELMELQRQVSLTRQAHFVGHELNVLIDEVDEETGERVGRSFRDAPEIDGVVT 402

Query: 441 N--SKNHNIGDIIKVRITDVKISTLYGELV 468
              +     GD+I+V+IT      L GE +
Sbjct: 403 VTGAGRARPGDMIRVKITASSEYDLSGEAI 432


>gi|326334467|ref|ZP_08200679.1| MiaB family RNA modification enzyme [Capnocytophaga sp. oral taxon
           338 str. F0234]
 gi|325693434|gb|EGD35361.1| MiaB family RNA modification enzyme [Capnocytophaga sp. oral taxon
           338 str. F0234]
          Length = 435

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 128/459 (27%), Positives = 216/459 (47%), Gaps = 33/459 (7%)

Query: 17  IVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA 76
           +  + I   R  V + GC  N+YDS  +     + G E V+  +  +++V+NTC     A
Sbjct: 1   MRTKSIKQNRINVVTLGCSKNIYDSEVLMGQLKASGKEVVH-EETGNIVVINTCGFINNA 59

Query: 77  AEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL 136
            E+  + +      K      G    V V GC+++    ++ +  P V+   G      L
Sbjct: 60  KEESINTILEYIQKKEE----GLVDKVFVMGCLSERYKPDLQKEIPNVDQYFGT---TEL 112

Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
           P LL       +V+  DY  E   ERL+     Y       A+L + EGCD+ C+FC +P
Sbjct: 113 PVLL-------KVLGADYKHELIGERLTTTPKNY-------AYLKVSEGCDRLCSFCAIP 158

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256
             RG   S  +  ++ EA KL   GV E+ L+ Q++  + G  L G++ T ++LL +L++
Sbjct: 159 LMRGRHKSTPIEDLIVEAEKLAKKGVKELILIAQDIT-YYGLDLYGKR-TLANLLRALAK 216

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           ++G+  +R   + P      +++   +   +  YL +P+Q  +D ILKSM R  T     
Sbjct: 217 VEGIEWIRIHYAFPTGFPKDVLEVMKEESKICKYLDIPLQHIADPILKSMKRGTTQARTT 276

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
           +++   R   P+IA+ +  IVG+P ET++DF    + V ++ + +   F YS    T   
Sbjct: 277 RLLQDFRKAIPEIALRTTLIVGYPNETEEDFELLKEFVRQMRFERLGCFTYSHEENTAAY 336

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQ 436
            + + V E VK  R   + +   +     N A VG+    LI++  KE    VGR+ +  
Sbjct: 337 ELEDNVPEEVKQRRAAEIMEIQSQISWELNQAKVGKTFRCLIDR--KEGQYFVGRTEYDS 394

Query: 437 S-----VVLNSKNH--NIGDIIKVRITDVKISTLYGELV 468
                 V++++  H   IGD   + IT+     LYGE V
Sbjct: 395 PDVDNEVLIDAAKHYVKIGDFADILITEATDFDLYGEPV 433


>gi|300854512|ref|YP_003779496.1| putative MiaB-like tRNA modifying enzyme [Clostridium ljungdahlii
           DSM 13528]
 gi|300434627|gb|ADK14394.1| putative MiaB-like tRNA modifying enzyme [Clostridium ljungdahlii
           DSM 13528]
          Length = 440

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 135/450 (30%), Positives = 220/450 (48%), Gaps = 22/450 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R  + S GC  N  DS  M      + Y  V+    AD+I++NTC   E A ++    + 
Sbjct: 5   RVGLISLGCDKNRLDSEVMLSNLNQE-YSLVHDPKLADVIIINTCGFIESAKQESIDTIL 63

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +   K          L+VV GC+AQ  G+E++   P +++++G   Y +L E + +   
Sbjct: 64  EMSQYKEKF----NCKLIVVTGCLAQRYGKELMELLPEIDIMLGVNDYDKLNETIRKCIE 119

Query: 146 --GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
               R+ + DYS  +  E   I+          TA+L I EGCD  CT+C++P  RG   
Sbjct: 120 TDNSRIYNCDYSDSNINEGKRIL-----TTSTYTAYLRIAEGCDNHCTYCIIPKIRGKYR 174

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR++  +++E   L + GV EI L+ Q+     G  + G+K    +L+  +S+I  +  +
Sbjct: 175 SRTIENIINECNDLANQGVKEIILIAQDTT-RYGIDIYGKKM-LPELIQKISKINEIEWI 232

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R    +P +++D +I      D +  Y+ +P+Q  SD ILK M RR    +  + ID++R
Sbjct: 233 RLLYCYPEELTDEIINEISMNDKVCKYIDIPIQHISDSILKLMGRRGRKLDIIENIDKLR 292

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           +    IAI +  IVGFPGET+++F    D V  + +     FKYS   GT  + M  QV 
Sbjct: 293 ARAKGIAIRTTIIVGFPGETEENFEELKDFVSTMKFDNLGVFKYSREEGTAAAEMKNQVP 352

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVV 439
           E +K+ R   L    ++   S N + +G   +V++E  GK+     GRS    P +  V+
Sbjct: 353 EEIKSAREGELMVLQKQVMTSINKSKIGSTYKVIVE--GKKGELWYGRSYEMAPDIDGVI 410

Query: 440 LN--SKNHNIGDIIKVRITDVKISTLYGEL 467
                K   IG ++ V+IT +    L G +
Sbjct: 411 YIKCKKTLKIGTMVNVKITHILEYDLVGVV 440


>gi|152993775|ref|YP_001359496.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Sulfurovum sp.
           NBC37-1]
 gi|151425636|dbj|BAF73139.1| tRNA-i(6)A37 thiotransferase enzyme [Sulfurovum sp. NBC37-1]
          Length = 419

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 160/435 (36%), Positives = 236/435 (54%), Gaps = 18/435 (4%)

Query: 36  MNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSR 94
           MNV DS  M       + YE   ++++ADLI++NTC +REK   K++S +G     K   
Sbjct: 1   MNVRDSEHMIAELNQKEPYELTQNVEEADLIIINTCSVREKPVAKLFSEIGVFNKYKK-- 58

Query: 95  IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDY 154
                   + VAGC A   G++I++R+P V+ V+G +   ++ E++++    K  V+ D 
Sbjct: 59  ----PGAKIGVAGCTASHLGKDIIKRAPSVDFVIGARNVSKITEVVDK----KHAVEIDT 110

Query: 155 SVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEA 214
             ++     S    G  R     A + I  GCDK CTFC+VP TRG EIS     +V E 
Sbjct: 111 DYDE-----STYAFGEYRTNPFKAMVNISIGCDKSCTFCIVPATRGDEISIPSDLLVQEI 165

Query: 215 RKLIDNGVCEITLLGQNVNAW-RGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
            K +  G  E+ LLGQNVN + R  G   EK  F+ LL  +S+I+GL R+R+T+ HP  M
Sbjct: 166 TKAVATGAKEVMLLGQNVNNYGRRFGATEEKIDFTGLLQKISKIEGLERIRFTSPHPLHM 225

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
            D  I+       +   +H+P+QSGS  +LK M R +T   +    ++IR + P+  IS+
Sbjct: 226 DDAFIQEFASNPKICKQIHVPLQSGSTSLLKVMKRGYTKENFLGRCEKIRMLCPEATIST 285

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLC 393
           D IVGFPGET+ DF  TMD+++K+ + Q FSFKYSPR  T  +   EQ+D  +  ERL  
Sbjct: 286 DIIVGFPGETEADFEDTMDVLEKVRFEQLFSFKYSPRPHTEAAEFEEQIDNKIAGERLTR 345

Query: 394 LQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKV 453
           LQ +  E      DA +G++ EV  ++  K  G++ GRS   + V +      +G I+ V
Sbjct: 346 LQTRHTEILDEIMDAQLGKVHEVYFDEL-KSNGRVSGRSDDGKLVFVEGSEELLGKIVDV 404

Query: 454 RITDVKISTLYGELV 468
           RI       L G LV
Sbjct: 405 RIIKTSRGALDGVLV 419


>gi|261879550|ref|ZP_06005977.1| MiaB family RNA modification enzyme [Prevotella bergensis DSM
           17361]
 gi|270333776|gb|EFA44562.1| MiaB family RNA modification enzyme [Prevotella bergensis DSM
           17361]
          Length = 443

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 118/448 (26%), Positives = 211/448 (47%), Gaps = 23/448 (5%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEKVYSFLGR 86
             + GC  N+ D+  +   F + GY  V+       ++ V+NTC   + A E+  + +  
Sbjct: 8   FVTMGCSKNLVDTEHLMRQFENLGYRCVHDPQRVQGEIAVVNTCGFIDAAKEESINTILE 67

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
               KN     G    + V GC++Q   +E+ +  P V+   G   +    +LL+     
Sbjct: 68  FAEAKNE----GRLKRLYVMGCLSQRYQDELEKTIPEVDRFYGKFNF---KQLLQDLGPS 120

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           +   D+D     + + LS   G         A++ I EGCD+ C +C +P   G   SRS
Sbjct: 121 EDPKDSDALFTQRRKELSA--GRKLTTPRHYAYIKIAEGCDRHCAYCAIPLMTGRHTSRS 178

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
           +  +++E ++L+  GV E  ++ Q +  + G  +DG K   ++L+  +++I G+  +R  
Sbjct: 179 MEDILEEVKQLVAEGVKEFQIIEQELT-YYGVDIDG-KPRIAELISRMADIPGVKWIRLH 236

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
            ++P      L+    +   +  YL + +Q  SD +L  M R  +  E  ++I +IR   
Sbjct: 237 YAYPNQFPLELLDVMREKPNVCKYLDIALQHISDHVLSRMLRHVSKAETLELIRKIRQEV 296

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQVDEN 385
           P I + +  +VGFPGET++DF+  +D V ++ + +  +F YS   GT  + +  + V   
Sbjct: 297 PGITLRTTLMVGFPGETEEDFQELLDFVREVRFERMGAFVYSEEEGTYSALHYEDDVPAE 356

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVV-- 439
           VK  RL  L    ++       A +G+  +V+I++  KE    VGR+    P +   V  
Sbjct: 357 VKQRRLDELMAVQQDISAEIQAAKIGKTFKVIIDR--KEGNYYVGRTEASSPEVDPEVLI 414

Query: 440 -LNSKNHNIGDIIKVRITDVKISTLYGE 466
            +  +N   G   +V+ITD     LYGE
Sbjct: 415 PVGKRNLRTGCFYEVKITDSDEFDLYGE 442


>gi|210134467|ref|YP_002300906.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Helicobacter
           pylori P12]
 gi|229890641|sp|B6JKJ8|MIAB_HELP2 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|210132435|gb|ACJ07426.1| 2-methylthioadenine synthetase [Helicobacter pylori P12]
          Length = 437

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 142/449 (31%), Positives = 241/449 (53%), Gaps = 23/449 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + ++++ GC MN  DS  +        Y+  +    ADLI++NTC +REK   K++S +G
Sbjct: 2   KVYIETMGCAMNSRDSEHLLSELSKLDYKETSDPKMADLILINTCSVREKPERKLFSEIG 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           +   +K        +  + V GC A   G +IL+++P V+ V+G +   ++ +++ + + 
Sbjct: 62  QFAKIKK------PNAKIGVCGCTASHMGADILKKAPSVSFVLGARNVSKISQVIHKEKA 115

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            +  +D D S        +     + +K  + + L I  GCDK C +C+VP+TRG EIS 
Sbjct: 116 VEVAIDYDES--------AYAFEFFEKKAQIRSLLNISIGCDKKCAYCIVPHTRGKEISI 167

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL-DGEKCTFSDLLYSLSEIKGLVRLR 264
            +  ++ EA KL +NG  E+ LLGQNVN +  +   +  K  FSDLL  LSEI G+ R+R
Sbjct: 168 PMDLILKEAEKLANNGTKELMLLGQNVNNYGVRFSSEHAKVDFSDLLDKLSEIPGIERIR 227

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +T+ HP  M+D  ++       +   +H+P+QSGS  +LK M R ++   +   ++R+++
Sbjct: 228 FTSPHPLHMNDGFLERFAKNPKVCKSIHMPLQSGSSAVLKMMRRGYSKEWFLNRVERLKA 287

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           + P++ IS+D IVGFP E+D DF  TM++++K+ +   +SF YSPR  T      E+V  
Sbjct: 288 LVPEVGISTDIIVGFPNESDKDFEDTMEVLEKVRFDTLYSFIYSPRPFTEAGAWKERVPL 347

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV---GRSPWLQSVVLN 441
            V + RL  LQ + +E         VG+   VL+E   +   ++V   GRS   + + + 
Sbjct: 348 EVSSSRLERLQNRHKEILEEKAKLEVGKTHVVLVENRREMDNQIVGFEGRSDTGKFIEVT 407

Query: 442 -SKNHNIGDIIKVRITDVKISTLYGELVV 469
             +  N G+++KV I         G L+ 
Sbjct: 408 CKEKRNPGELVKVEIISHS----KGRLIA 432


>gi|229890672|sp|B2USA0|MIAB_HELPS RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
          Length = 437

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 140/449 (31%), Positives = 241/449 (53%), Gaps = 23/449 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + ++++ GC MN  DS  +        Y+  +    ADLI++NTC +REK   K++S +G
Sbjct: 2   KVYIETMGCAMNSRDSEHLLSELSKLDYKETSDPKAADLILINTCSVREKPERKLFSEIG 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           +   +K        +  + V GC A   G +IL+++P V+ V+G +   ++ +++ + + 
Sbjct: 62  QFAKIKK------PNAKIGVCGCTASHMGADILKKAPSVSFVLGARNVSKISQVIHKEKA 115

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            +  +D D S        +     + +K  + + L I  GCDK C +C+VP+TRG EIS 
Sbjct: 116 VEVAIDYDES--------AYAFEFFEKKAQIRSLLNISIGCDKKCAYCIVPHTRGKEISI 167

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL-DGEKCTFSDLLYSLSEIKGLVRLR 264
            +  ++ EA KL  NG  E+ LLGQNVN +  +   +  K  FSDLL  LSEI+G+ R+R
Sbjct: 168 PMDLILKEAEKLASNGTKELMLLGQNVNNYGARFSSEHAKVDFSDLLDKLSEIQGIERIR 227

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +T+ HP  M+D  ++       +   +H+P+QSGS  +LK M R ++   +   ++++++
Sbjct: 228 FTSPHPLHMNDAFLERFAKNPKVCKSIHMPLQSGSSTVLKMMRRGYSKEWFLNRVEKLKA 287

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           + P++ IS+D IVGFP E+D DF  TM++++K+ +   +SF YSPR  T      E+V  
Sbjct: 288 LVPEVGISTDIIVGFPNESDKDFEDTMEVLEKVRFDTLYSFIYSPRPFTEAGAWKERVPL 347

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV---GRSPWLQSVVLN 441
            V + RL  LQ + +E         VG+   VL+E   +   ++V   GRS   + + + 
Sbjct: 348 EVSSSRLERLQNRHKEILEEKAKLEVGKTHVVLVENRREIDNQIVGFEGRSDTGKFIEVA 407

Query: 442 -SKNHNIGDIIKVRITDVKISTLYGELVV 469
             +  N G++++V I         G L+ 
Sbjct: 408 CKEKRNPGELVRVEIVSHS----KGRLIA 432


>gi|261491925|ref|ZP_05988502.1| 2-methylthioadenine synthetase [Mannheimia haemolytica serotype A2
           str. BOVINE]
 gi|261312392|gb|EEY13518.1| 2-methylthioadenine synthetase [Mannheimia haemolytica serotype A2
           str. BOVINE]
          Length = 445

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 132/463 (28%), Positives = 215/463 (46%), Gaps = 41/463 (8%)

Query: 21  CIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKV 80
              P   F+ S GC  N+ DS R+     + GY  + S ++ADL+++NTC   + A ++ 
Sbjct: 2   SASPNIGFI-SLGCPKNLVDSERILTELRADGYNIIPSYENADLVIVNTCGFIDSAVQES 60

Query: 81  YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140
              +G                 V+V GC+  A+  +I    P V  + GP +Y  +   +
Sbjct: 61  LESIGEALEANGK---------VIVTGCLG-AKENQIREVHPKVLEITGPHSYEAVMNHV 110

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
            +              E       +   G        A+L I EGCD  CTFC++P  RG
Sbjct: 111 HKY---------VPKPEFNPYTSLVPKQGIKLTPKHYAYLKISEGCDHLCTFCIIPSMRG 161

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW----------RGKGLDGE--KCTFS 248
              SRS+ QV+DEA++L+D GV E+ ++ Q+ +A+          +    +G   K    
Sbjct: 162 DLASRSIVQVLDEAKRLVDAGVKELLIVSQDTSAYSLDRKKEEETKTVFWNGMPIKSNLI 221

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
            L   L  +   VRL Y   +P       + A G    ++PYL +P+Q  S +ILK+M R
Sbjct: 222 TLCEQLGSMGVWVRLHYVYPYPHVDDLIPLMAAG---KILPYLDIPLQHASPKILKAMKR 278

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
             +     + I + R + P++ + S FIVGFPGET++DF+  +D + +    +   FK+S
Sbjct: 279 PGSIERTLERIKKWREICPELTLRSTFIVGFPGETEEDFQLLLDFLKEAQLDRVGCFKFS 338

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--G 426
           P  G   ++M +QV E VK ER     +  +E   +   A +G+ ++V+I+   +E   G
Sbjct: 339 PVEGAVATDMPDQVPEEVKEERFHRFMQLQQEISAARLQAKIGKTVQVIIDDIDEEGIIG 398

Query: 427 KLVGRSPWLQSVVLNSKNHN----IGDIIKVRITDVKISTLYG 465
           + +  +P +  VV      N    +G II V IT      L+G
Sbjct: 399 RSMADAPEIDGVVYVDNPSNQLVTVGQIISVTITHADEYDLWG 441


>gi|152988570|ref|YP_001349943.1| hypothetical protein PSPA7_4596 [Pseudomonas aeruginosa PA7]
 gi|238066617|sp|A6VA58|RIMO_PSEA7 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|150963728|gb|ABR85753.1| conserved hypothetical protein [Pseudomonas aeruginosa PA7]
          Length = 440

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 131/460 (28%), Positives = 212/460 (46%), Gaps = 34/460 (7%)

Query: 21  CIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKV 80
              P+  FV S GC   + DS R+      +GYE V + +DAD++V+NTC   + A  + 
Sbjct: 3   TPTPKVGFV-SLGCPKALVDSERILTQLRMEGYEVVPTYEDADVVVVNTCGFIDSAKAES 61

Query: 81  YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140
              +G              +  V+V GC+   E   I    P V  V GPQ Y ++   +
Sbjct: 62  LEVIGEA---------IAENGKVIVTGCMGVEEHA-IRDVHPSVLAVTGPQQYEQVVTAV 111

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
                 K   +    +        +   G        A+L I EGC+  C+FC++P  RG
Sbjct: 112 HEVVPPKTEHNPLIDL--------VPPQGIKLTPRHYAYLKISEGCNHSCSFCIIPSMRG 163

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLY 252
             +SR +  V+ EA +L+  GV E+ ++ Q+ +A+      +    +G+  K    +L  
Sbjct: 164 KLVSRPVGDVLSEAERLVKAGVKELLVISQDTSAYGVDLKYKTDFWNGQPVKTRMKELCE 223

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
           +L  +   VRL Y   +P       + A G    L+PYL +P Q  S ++LK+M R    
Sbjct: 224 ALGGMGVWVRLHYVYPYPNVDDVIPLMAAG---KLLPYLDIPFQHASPKVLKAMKRPAFE 280

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
            +        R + P++ I S FIVGFPGET++DF+  +D + +    +   F+YSP  G
Sbjct: 281 DKTLARFKHWREICPELTIRSTFIVGFPGETEEDFQYLLDWLTEAQLDRVGCFQYSPVEG 340

Query: 373 TPGSNM-LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLV 429
            P + + LE V + VK +R        +    +     VG+ IEVLI++  ++   G+  
Sbjct: 341 APANELGLEPVPDEVKQDRWERFMAHQQAISAARLQLKVGKEIEVLIDEVDEQGAVGRSW 400

Query: 430 GRSPWLQS-VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
             +P +   V ++S     GD ++VRITD     L+ E V
Sbjct: 401 ADAPEIDGNVFVDSDALKPGDKVRVRITDADEYDLWAEPV 440


>gi|94985469|ref|YP_604833.1| tRNA-i(6)A37 modification enzyme MiaB [Deinococcus geothermalis DSM
           11300]
 gi|123381901|sp|Q1IYM0|MIAB_DEIGD RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|94555750|gb|ABF45664.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Deinococcus geothermalis
           DSM 11300]
          Length = 459

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 160/447 (35%), Positives = 235/447 (52%), Gaps = 20/447 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R  + +YGCQMN YD+  +E    S G + V+S+D+AD +++NTC +R K  +KV S LG
Sbjct: 2   RAHLITYGCQMNEYDTHLVESQLVSFGADIVSSVDEADFVLINTCAVRGKPVDKVRSLLG 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +R  K         L+V + GC+AQ E  + + R   V+V++GP +   + + LE    
Sbjct: 62  DLRKQKAQ-----RPLVVGMMGCLAQLEEGQQIARKFEVDVLLGPGSLLDIGKALE---T 113

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            +R     +  E          G       + A LTI  GCD  CT+C+VP TRG ++SR
Sbjct: 114 NERFWGLQFKDELHGHIPPPPQG------KLQAHLTIMRGCDHHCTYCIVPTTRGPQVSR 167

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK---CTFSDLLYSLSEIKGLVR 262
               ++ E   L+  GV E+TLLGQNVNA  G           +F++LL  +    G+ R
Sbjct: 168 HPDDILRELDLLLAAGVQEVTLLGQNVNA-YGVDQGARLAGYPSFANLLRLVGR-SGIRR 225

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +++TTSHP + ++ +  A  +   +  Y+HLPVQSGS+R+L+ M R +T  +Y   I  I
Sbjct: 226 VKFTTSHPMNFTEDVAAAMAETPAVCEYVHLPVQSGSNRVLRRMAREYTREKYLSHIAEI 285

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R   PD+ +++D IVGFPGET++DF+ T+ L D++GY  A+ F YS R GTP       +
Sbjct: 286 RRHLPDVVLATDIIVGFPGETEEDFQETLSLYDEVGYDAAYMFIYSARPGTPSYKHFADL 345

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
              VK ERL  L  K +E     N A VG I EVL+     +   L G +      V+  
Sbjct: 346 PREVKTERLQRLIAKQKEWSARKNAAKVGTIQEVLLRGDAHDAHFLEGHTRGNHPTVVPK 405

Query: 443 KNHNIG-DIIKVRITDVKISTLYGELV 468
                G  I + RI       LYG L+
Sbjct: 406 AAGASGPGIYRARIEHATPHMLYGRLI 432


>gi|302391395|ref|YP_003827215.1| MiaB-like tRNA modifying enzyme [Acetohalobium arabaticum DSM 5501]
 gi|302203472|gb|ADL12150.1| MiaB-like tRNA modifying enzyme [Acetohalobium arabaticum DSM 5501]
          Length = 436

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 145/445 (32%), Positives = 238/445 (53%), Gaps = 17/445 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R    + GC++N YD+  M ++F +  YE V+  D+AD+ V+NTC +  + A K    + 
Sbjct: 3   RVAFYTLGCKVNQYDTEAMINLFTAADYELVDFSDEADVYVINTCTVTHQGARKSRKMVR 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R         +     +V V GC  Q    EIL     V+++VG +   R+ +L+E+A+ 
Sbjct: 63  RAN-------RRNPQAIVAVVGCYPQVSPAEIL-EIDGVDLIVGTEGQSRIVDLVEQAKR 114

Query: 146 GKRVVD--TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
               ++   D S  + FE + + D    R R   A L +Q+GCD FC +C++PYTRG   
Sbjct: 115 ADESLNFVRDISEAEDFEEIPL-DKFEERTR---ASLKVQDGCDNFCAYCIIPYTRGSVR 170

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR +   V EA++L  +G  EI L G ++ A  GK ++ E+     LL  L EI GL R+
Sbjct: 171 SRRIEDAVAEAKRLAASGFKEIVLTGIHLGA-YGKEVE-EEIDLVTLLKELIEISGLERI 228

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R ++    +++  LI      + L  +LHLP+Q+GSD+IL +MNR +T  +Y   +  IR
Sbjct: 229 RLSSIEATEVTSDLIDLIATEEKLCRHLHLPLQNGSDKILAAMNRDYTVQQYADKVAEIR 288

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           S  P IA+++D +VGFPGETD+DF AT  L++++ ++    FKYS R GT  +    QV 
Sbjct: 289 SNIPQIALTTDVMVGFPGETDEDFEATYQLIEELAFSDLHVFKYSKREGTAAAKFSNQVH 348

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKH-GKEKGKLVGRSPWLQSVVLNS 442
             +K ER   L+K   +    +    +G  ++VLIE+        L G +     V+++ 
Sbjct: 349 SKLKKERSAKLRKLADDLASQYRKKFLGAELDVLIEEERDGSTDLLTGLTDNYLRVMIDD 408

Query: 443 KNHNIGDIIKVRITDVKISTLYGEL 467
           ++    ++I+V +  ++   L G++
Sbjct: 409 QDQYRKELIEVELNKLQEDYLIGKI 433


>gi|194476759|ref|YP_002048938.1| hypothetical protein PCC_0286 [Paulinella chromatophora]
 gi|171191766|gb|ACB42728.1| hypothetical protein PCC_0286 [Paulinella chromatophora]
          Length = 444

 Score =  375 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 120/459 (26%), Positives = 219/459 (47%), Gaps = 30/459 (6%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           +  Q       GC+ N  D+  +  +  + GY+   + + A L+V+NTC   ++A E+  
Sbjct: 1   MNKQIVAFAHLGCEKNRVDTEHILGLLAAAGYQISANENTASLVVVNTCSFIQQAREESI 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             +  +               +++AGC+AQ   EE+L   P    ++G   Y  +  +L+
Sbjct: 61  RTIVELAEQGKE---------LIIAGCLAQHFQEELLNYIPEAKAIIGTGDYQHIVNILK 111

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT---AFLTIQEGCDKFCTFCVVPYT 198
           +   G+R+           E + + D    R R ++   A+L + EGCD  CTFC++P  
Sbjct: 112 KVEAGERINKVSD------EPIFLADEHLPRYRSISNPVAYLKVAEGCDYSCTFCIIPKL 165

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258
           RG + SR +  +V EA  L   GV E+ L+ Q +    G  + G K   ++LL +L ++ 
Sbjct: 166 RGKQRSRPIESIVAEAHNLAAQGVKELILISQ-ITTNYGLDIYG-KSKLTELLRALGQVD 223

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
            +  +R   ++P  +++ ++ A+ D+  ++PYL LP+Q     +L++MNR         +
Sbjct: 224 -IPWIRVHYAYPTGLTNDVLAAYKDVPNILPYLDLPLQHSHPNMLRAMNRPWQETINENV 282

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           I  IR   P+  + + FI GFPGET++ F   ++ + +  +     F +SP  GT  + M
Sbjct: 283 IKAIRKNLPNAVLRTTFITGFPGETEEYFEHLINFIKEQCFDHVGVFTFSPEDGTQAATM 342

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPW 434
              +   +  ER   + +  +    + N  C+G I++VLIE+     G ++GR    +P 
Sbjct: 343 TNHIPFEIAQERRNRIMELQQPIARAKNIQCIGNIVDVLIEQEQPNTGDMIGRCSRFAPD 402

Query: 435 LQS-VVL----NSKNHNIGDIIKVRITDVKISTLYGELV 468
           +   V +    +     +G I++V IT      L GE+V
Sbjct: 403 VDGEVHVIPRSDGMRARLGTIVQVLITGADTYDLRGEIV 441


>gi|256545382|ref|ZP_05472745.1| Fe-S oxidoreductase [Anaerococcus vaginalis ATCC 51170]
 gi|256398943|gb|EEU12557.1| Fe-S oxidoreductase [Anaerococcus vaginalis ATCC 51170]
          Length = 432

 Score =  375 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 137/448 (30%), Positives = 242/448 (54%), Gaps = 19/448 (4%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + + F +K+ GC++N Y+S  +E++F  +G+E     ++AD+ V+NTC +   +  K   
Sbjct: 1   MKKTFNIKTLGCKVNQYESEAIEELFKKRGFE--KKEENADIYVINTCTVTNMSDRKSRQ 58

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            + + R       KE  D ++ V GC +Q + +E+ ++   V++++G +    + +L E 
Sbjct: 59  TISKAR-------KENKDAVIAVIGCYSQVKADEV-KKIDGVDIILGSRNKEEVVDLCEN 110

Query: 143 -ARFGKRVVDTD-YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
             +  +++ D + +S+ +  E L I     N+     A++ IQ+GC+ +C++C++PY RG
Sbjct: 111 FIKNNEKMEDVEEFSIGEAIEDLEIS----NQADMTRAYIKIQDGCNMYCSYCLIPYARG 166

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
              SR L  ++DEA++L DNG  EI L G +V A  GK  D +  +  D++  +++I G+
Sbjct: 167 NIASRDLVSIIDEAKRLRDNGYKEIVLTGIHV-ASYGKDFDLD-ISLIDVIEHIAKIDGI 224

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R ++  PR +    +K   D      + HL +QSGSD +LK MNR++T   +++ +D
Sbjct: 225 ERIRLSSMEPRHIDREFLKRMKDTKKACDHFHLSLQSGSDDVLKLMNRKYTTKVFKEKVD 284

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
            IR   P+  +++D IVGFP E++ +   T + V  I +++   FKYS R GT  ++M  
Sbjct: 285 LIREYFPNAGLTTDIIVGFPNESEKNHEETKNFVKDIKFSKTHLFKYSKRDGTKAASMKN 344

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440
           QVD N+K  R   L +  +E    F D  +G+ + VL E   +  G   G S     V  
Sbjct: 345 QVDGNIKKRRSKELSEIEKEISHEFLDKQIGKTLSVLFETKTELDGYRSGYSTNYLRVH- 403

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
           +     I +I  V+IT      L G++V
Sbjct: 404 SKDRVEINEIKNVKITQRIDDYLIGDIV 431


>gi|171472305|gb|ACB46858.1| MiaB [Pseudomonas stutzeri]
          Length = 441

 Score =  375 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 131/461 (28%), Positives = 212/461 (45%), Gaps = 37/461 (8%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
             P+  F+ S GC     DS R+      +GY+ V S +DAD++V+NTC   + A  +  
Sbjct: 4   ATPKVGFI-SLGCPKATVDSERILTQLRMEGYQIVPSYEDADVVVVNTCGFIDSAKAESL 62

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             +G              +  V+V GC+   +   I    P V  V GPQ Y ++   + 
Sbjct: 63  DAIGEA---------IAENGKVIVTGCMG-VDENNIRGVHPSVLAVTGPQQYEQVVNAVH 112

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
                   V       D F  L    G     R   A+L I EGC+  C+FC++P  RG 
Sbjct: 113 E-------VVPPNIEHDPFVDLVPPQGIKLTPRHY-AYLKISEGCNHTCSFCIIPSMRGK 164

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE---------KCTFSDLLY 252
            +SR +  V+ EA +L+  GV E+ ++ Q+ +A  G  L  +         K    +L  
Sbjct: 165 LVSRPVGDVLSEAERLVKAGVKEVLVISQDTSA-YGVDLKYKLDFWNGQPVKTRMLELCE 223

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
            L ++   VRL Y   +P       + A G    ++PYL +P Q  S ++LK+M R    
Sbjct: 224 ELGKMGVWVRLHYVYPYPNVDDVIPLMAAG---KILPYLDIPFQHASPKVLKAMKRPAFE 280

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
            +    I + R + P++ I S FIVGFPGET++DF+  +D + +    +   F+YSP  G
Sbjct: 281 DKTLARIKKWREICPELTIRSTFIVGFPGETEEDFQYLLDWLTEAQLDRVGCFQYSPVDG 340

Query: 373 TPGSNM-LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLV 429
            P   M LE V + +K ER        +          VGQ ++VLI+K  ++   G+  
Sbjct: 341 APAEAMDLEPVPDEIKQERWDRFMAHQQAISAERLQRKVGQELDVLIDKVDEDGAIGRSW 400

Query: 430 GRSPWLQSVVL--NSKNHNIGDIIKVRITDVKISTLYGELV 468
             +P +  +V   +++    GD ++VR+T+     L+ E++
Sbjct: 401 ADAPEIDGMVYVDSAQPLQPGDKVRVRVTNADEYDLWAEVI 441


>gi|308049930|ref|YP_003913496.1| 30S ribosomal protein S12P methylthiotransferase [Ferrimonas
           balearica DSM 9799]
 gi|307632120|gb|ADN76422.1| SSU ribosomal protein S12P methylthiotransferase [Ferrimonas
           balearica DSM 9799]
          Length = 477

 Score =  375 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 141/482 (29%), Positives = 215/482 (44%), Gaps = 46/482 (9%)

Query: 10  VAHMVSQIVDQCIVPQ----------RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSM 59
           VA   S      + P+          R    S GC  N+ DS R+      +GY+ VN+ 
Sbjct: 14  VAEQPSTTHATKVAPEMGNGAKGSGTRIGFISLGCPKNLVDSERILTQLRIEGYDIVNTY 73

Query: 60  DDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILR 119
           + ADL+++NTC   + A ++    +G    LK +         V+V GC+  A+ +EI +
Sbjct: 74  EGADLVIVNTCGFIDSAVQESLDTIGEA--LKENGK-------VLVTGCLG-AKEDEIKQ 123

Query: 120 RSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAF 179
             P V  + GP  Y  + E +                E       I D G        A+
Sbjct: 124 IHPKVLGITGPHAYEMVLEQVHAHLP---------KPEHDPMTSLIPDHGVKLTPRHYAY 174

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
           L I EGC+  CTFC++P  RG   SR + +++DEA++L   GV E+ ++ Q+  A  G  
Sbjct: 175 LKISEGCNHKCTFCIIPSMRGTLDSRPMGEILDEAKRLQAAGVKELLVISQDTGA-YGVD 233

Query: 240 LDGE---------KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY 290
           +  +         K +   L   L+E    VRL Y   +P       + A G    ++PY
Sbjct: 234 VKHKTAFWNGMPVKTSMLALCEKLAEFGIWVRLHYVYPYPNIADVLPLMAEG---KVLPY 290

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
           L +P Q  S RILK M R   A    + I   R V PD+ I S FIVGFPGET+ DF+  
Sbjct: 291 LDIPFQHASPRILKLMKRPGNAERTLEQIKAWREVCPDLVIRSTFIVGFPGETEADFQLL 350

Query: 351 MDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACV 410
           +D +++    +   FKYSP  G   + + + VDE VK ER                   V
Sbjct: 351 LDWLEEARLDRVGCFKYSPVEGATANELPDAVDEAVKEERYQRFMAVQARISREKLADRV 410

Query: 411 GQIIEVLIEKHGKEK--GKLVGRSPWLQSVVLNSKNH--NIGDIIKVRITDVKISTLYGE 466
           GQ + V++++ G++   G+    +P +   V+    +  N GD++ V I       L+G 
Sbjct: 411 GQEMLVIVDEIGEDGAIGRSYADAPEIDGRVIIGGEYDLNPGDMVWVSIEFADDHDLFGT 470

Query: 467 LV 468
           LV
Sbjct: 471 LV 472


>gi|282882041|ref|ZP_06290682.1| hypothetical protein HMPREF0628_0687 [Peptoniphilus lacrimalis
           315-B]
 gi|281298071|gb|EFA90526.1| hypothetical protein HMPREF0628_0687 [Peptoniphilus lacrimalis
           315-B]
          Length = 437

 Score =  375 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 123/448 (27%), Positives = 220/448 (49%), Gaps = 20/448 (4%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
             + + GC  N  DS  M  +     Y   N    AD+I++NTC   + A E+    + +
Sbjct: 4   VKIVTLGCSKNEVDSSCMMSILDKNRYSVENDPQKADIIIVNTCGFIDAAKEESIDTILQ 63

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           +   K      G    ++++GC+AQ   EE+L+  P  + ++G     ++ ++L+R+  G
Sbjct: 64  MAKYKE----TGSCKKMILSGCLAQRYPEELLKEIPEADGIIGTGNISQINDILDRSIDG 119

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           ++V+  D            ++G    K  +T ++ I EGC+  C++C++P  RG   SR 
Sbjct: 120 EKVIKVDNI------NSPYLEGIKKEKVNITEYVKISEGCNNNCSYCIIPKLRGKNRSRR 173

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
           +  + +E   L  NG  EI L+ QN     G  L G + + S L+  +S+I  +  +R  
Sbjct: 174 IEDIYEEVSYLAKNGAREIILIAQNTT-DYGIDLYG-RYSLSKLIKEISKINDIKWIRVL 231

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
             +P   +D LI    + D L+ Y+ +P+Q  SD +LK M+R       + +I+++R ++
Sbjct: 232 YLYPDHFTDELINEFINNDKLVKYVDIPLQHYSDHVLKLMDRHTDKEHIKNLIEKLRKIK 291

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
             + I + FIVGFPGE+++DF    + ++   + +   F YS    T  +N+ EQ+DE+V
Sbjct: 292 -GLVIRTTFIVGFPGESEEDFNILREFINTYKFDKLGVFTYSREESTKANNLNEQIDEDV 350

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVVL-- 440
           K  R   + +   +      +  +GQ+++VLIE+   E     GR    SP +  V+   
Sbjct: 351 KEYRRDIIMQDQLKISERLLEDKIGQVLQVLIEEK-IEDNLFAGRSYIDSPDIDGVIYVN 409

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
           + KN  I   I V++T      L G+ +
Sbjct: 410 SDKNLTINSFINVKVTSSMEYDLIGDAI 437


>gi|78485658|ref|YP_391583.1| hypothetical protein Tcr_1314 [Thiomicrospira crunogena XCL-2]
 gi|123741577|sp|Q31G14|RIMO_THICR RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|78363944|gb|ABB41909.1| MiaB-like tRNA modifying enzyme [Thiomicrospira crunogena XCL-2]
          Length = 453

 Score =  375 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 128/455 (28%), Positives = 210/455 (46%), Gaps = 34/455 (7%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
              + S GC     DS R+     ++GY   NS ++AD +++NTC   + A ++    +G
Sbjct: 7   TVGIVSLGCPKATVDSERILTQLKAEGYHLTNSYEEADAVIVNTCGFIDSAVQESLDTIG 66

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
              +          +  V+V GC+   +G  I +  P V  V GP  Y  +   +  A  
Sbjct: 67  EALD---------ENGRVIVTGCLGAKDG-VIEKVHPSVLAVSGPAAYEEVLTAVHEA-- 114

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                       D F  L +   G        A+L I EGC+  CTFC++P  RG  +SR
Sbjct: 115 ------IAPPKHDPFVDL-VPPQGIKLTPKHFAYLKISEGCNHRCTFCIIPSMRGNLVSR 167

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYSLSEI 257
            +S VV EAR+L + GV E+ ++ Q+  A+      + +  DG   K +   L  +LSE+
Sbjct: 168 PVSDVVAEARRLKEAGVKELLVVSQDTAAYGVDVKYKTEFADGRPTKTSMFGLAEALSEL 227

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
              VRL Y   +P       + A G    L+PYL +P+Q     ILK+M R     +  +
Sbjct: 228 GIWVRLHYVYPYPNVEDVIPLMAEG---KLLPYLDMPLQHADPDILKAMKRPGNVDKTLE 284

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
            I + R   PD+ I S FIVGFPGET+  F+  +D +++    +   F+YSP  G   ++
Sbjct: 285 RIKKWREQVPDLTIRSTFIVGFPGETEAQFQNLLDFIEEAQLDRVGCFQYSPVEGAVAND 344

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPWL 435
           + E V + VK ER     +  ++   +   A +G+ I+VL+++  +E    +    +P +
Sbjct: 345 LAEPVPDEVKQERFDRFMQLQQQISANKMQAKIGKTIQVLVDEVDEEGAIARSKADAPEI 404

Query: 436 QSVVL--NSKNHNIGDIIKVRITDVKISTLYGELV 468
             +V      + N GD ++V +       L+   V
Sbjct: 405 DGMVFIPEGHHLNPGDFVEVEVFAADEYDLWATPV 439


>gi|220904542|ref|YP_002479854.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
 gi|219868841|gb|ACL49176.1| RNA modification enzyme, MiaB family [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
          Length = 454

 Score =  375 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 156/454 (34%), Positives = 251/454 (55%), Gaps = 17/454 (3%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           ++ + + + ++GCQMNV+DS  +     ++G+    S++DA ++V+NTC +REK  +KV 
Sbjct: 1   MIEKSYHIITFGCQMNVHDSQWLGRALTARGFVEA-SLEDAQVVVVNTCSVREKPEQKVM 59

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S LGRIR++         D+LV VAGCVAQ  GE    +   V +V G       P  +E
Sbjct: 60  SALGRIRHVTGG----NPDVLVGVAGCVAQQLGEGFFSKESQVRLVAGSDGISGAPAAIE 115

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           R      +  +       +       G      G  AF+ I +GCD FC +C+VP+TRG 
Sbjct: 116 RLLEEPTLHLSLLDFTSHYIEREAGPGTSGSSSGPVAFVNIMQGCDNFCAYCIVPFTRGR 175

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           + SRS + ++DE R +++ G  EITLLGQNVNA+ G+   G+  +F+ LL  ++ + GL 
Sbjct: 176 QKSRSAAAILDECRAVLERGAREITLLGQNVNAF-GQDKSGDGTSFAQLLRQVAGLPGLE 234

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           RLRY T HP+DM    + A  +L  L P LHLP+Q+GSD +L+SM RR+ +  + +++D 
Sbjct: 235 RLRYVTPHPKDMGPEDVAAFAELPQLCPRLHLPLQAGSDVVLRSMRRRYDSAAFLRLVDD 294

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R+ RPD+A+S+D IV FPGET++DF+ T+ ++    +  +FSF YS R G   +    +
Sbjct: 295 LRAARPDLALSTDLIVAFPGETEEDFQDTLAMMRACNFMSSFSFIYSDRPGARAALFPGK 354

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACV---GQIIEVLIEKHGKEKGK-----LVGRSP 433
           +  +V  +RL  LQ    +    +  A V    +   +L+E    + G+       GR P
Sbjct: 355 IAPDVAQDRLRRLQALQDDLGARWLAARVENRDKT-TLLMEGPSPKPGESAEPSWQGRDP 413

Query: 434 WLQSVVL--NSKNHNIGDIIKVRITDVKISTLYG 465
           +   V +   +   + G +++  IT+ K  +L  
Sbjct: 414 YGVPVHVPLPAGADHTGFLVQTVITEAKKHSLLA 447


>gi|126659494|ref|ZP_01730627.1| hypothetical protein CY0110_07204 [Cyanothece sp. CCY0110]
 gi|126619228|gb|EAZ89964.1| hypothetical protein CY0110_07204 [Cyanothece sp. CCY0110]
          Length = 414

 Score =  375 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 126/429 (29%), Positives = 215/429 (50%), Gaps = 19/429 (4%)

Query: 44  MEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLV 103
           M  +   QGY    + + AD +++NTC   ++A E+    L  +               +
Sbjct: 1   MLGLLAQQGYSIDANEELADYVIVNTCSFIQEAREESVRTLVELAEANKK---------I 51

Query: 104 VVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERL 163
           +++GC+AQ   EE+L+  P    +VG   Y ++ ++++R   G+RV +   +     + +
Sbjct: 52  IISGCMAQHFQEELLQELPEAVALVGTGDYQKIVDVVQRVETGERVTEVSQNPTFVADEM 111

Query: 164 SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVC 223
           +     Y       A+L + EGCD  C FC++P+ RG + SRS+  +V EA++L + GV 
Sbjct: 112 TP---RYRTTNEAVAYLRVAEGCDYRCAFCIIPHLRGNQRSRSIESIVTEAQQLAEQGVR 168

Query: 224 EITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGD 283
           EI L+ Q +    G  L GE    ++LL  L ++  +  +R   ++P  +++ +I A  +
Sbjct: 169 EIILISQ-ITTNYGLDLYGEPK-LAELLRVLGKVD-IPWIRIHYAYPTGLTEKVIDAIRE 225

Query: 284 LDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGET 343
              ++PYL LP+Q     ILK+MNR         II+R++   P+  + + FIVGFPGET
Sbjct: 226 TPNILPYLDLPLQHSHPAILKAMNRPWQGQVNDNIIERLKEAIPNAILRTTFIVGFPGET 285

Query: 344 DDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQV 403
           ++ F   ++ V +  +     F +SP   TP   M  QV   +  ER   L +  +    
Sbjct: 286 EEHFEHLINFVQRHEFDHVGVFTFSPEEETPAYQMPNQVPSEIAKERRNYLMEIQQPIAA 345

Query: 404 SFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVLNSKNHNIGDIIKVRITDVK 459
             N  CVGQ +EVLIE+   +  + +GRS    P +  VV       +  I+ V+ITD  
Sbjct: 346 KKNQKCVGQTVEVLIEQENPKTEECIGRSIRFAPEVDGVVYVRGKGQLNSIMPVKITDAD 405

Query: 460 ISTLYGELV 468
           +  LYG+++
Sbjct: 406 VYDLYGKVI 414


>gi|320334840|ref|YP_004171551.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Deinococcus maricopensis DSM 21211]
 gi|319756129|gb|ADV67886.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Deinococcus maricopensis DSM 21211]
          Length = 460

 Score =  375 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 157/448 (35%), Positives = 240/448 (53%), Gaps = 21/448 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +  + +YGCQMN YD+  ++    S G + V+S+D+AD +++NTC IR +   KV S LG
Sbjct: 2   KAHMITYGCQMNEYDTHTVQSQLVSLGADMVHSVDEADFVLINTCAIRGRPVNKVRSLLG 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +R LK         ++V + GC+AQ +  + +     V+V++GP +   +  +LE    
Sbjct: 62  DLRKLKTR-----RPIVVGMMGCLAQLQEGQDMAEEYGVDVLIGPGSLLEIGRVLE---N 113

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            ++    ++  E           G      + A LTI  GCD  CT+C+VP TRG ++SR
Sbjct: 114 NEKFWALNFRDELHDHIPPPPPQGT-----LQAHLTIMRGCDHHCTYCIVPQTRGPQVSR 168

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK---CTFSDLLYSLSEIKGLVR 262
               ++ E   L+  GV E+TLLGQNVNA  G           TF+DLL  +    G+ R
Sbjct: 169 HPDSILRELDTLLAAGVQEVTLLGQNVNA-YGFDQGARMAGLPTFADLLRLVGR-TGIRR 226

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +++TTSHP + ++ +  A  D   +  ++HLP+QSGS+R+L+ M R +T  +Y Q I  I
Sbjct: 227 VKFTTSHPMNFTEDVAMAMADTPAICEFIHLPMQSGSNRVLRRMAREYTREQYLQHIADI 286

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R   P+  +S+D IVGFPGET++DF+ T+DL D++GY QAF F YS R GTP     E +
Sbjct: 287 RKHLPNAVLSTDVIVGFPGETEEDFQQTLDLYDEVGYDQAFMFIYSARPGTPSHKHFEDL 346

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
            + +K ERL  L +  ++     N A VG   EVL+      +G L G +     VV+  
Sbjct: 347 PKELKTERLGRLVELQKQWSQRRNAALVGSAQEVLLRGDAVTEGFLEGHTRGNHPVVVPK 406

Query: 443 --KNHNIGDIIKVRITDVKISTLYGELV 468
                  G +   RI       +YG+L+
Sbjct: 407 ALGADAAG-VYTARIEHATPHMMYGKLL 433


>gi|293391674|ref|ZP_06636008.1| MiaB family RNA modification enzyme [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290952208|gb|EFE02327.1| MiaB family RNA modification enzyme [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 443

 Score =  375 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 134/463 (28%), Positives = 214/463 (46%), Gaps = 41/463 (8%)

Query: 21  CIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKV 80
              P   FV S GC  N+ DS R+     S GY  + S ++ADL+++NTC   + A ++ 
Sbjct: 2   STTPNIGFV-SLGCPKNLVDSERILTELRSNGYNIIPSYENADLVIVNTCGFIDSAVQES 60

Query: 81  YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140
              +G                 V+V GC+  A+ ++I +  P V  + GP +Y  +   +
Sbjct: 61  LETIGEALEENGK---------VIVTGCLG-AKEDQIRQVHPKVLEISGPHSYETVMNQV 110

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
            +                 +E L     G        A+L I EGCD  C FC++P  RG
Sbjct: 111 HKY--------VPKPQYSPYESLVPAQ-GVKLTPKHYAYLKISEGCDHRCAFCIIPSMRG 161

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNV----------NAWRGKGLDGE--KCTFS 248
              SR ++QV+DEA++L+D GV E+ ++ Q+           N  +    +G   K    
Sbjct: 162 DLDSRPITQVLDEAKRLVDAGVKELLIVSQDTSAYALDQSKENQNKTVFWNGMPIKNNLI 221

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
            L   L  +   VRL Y   +P       + A G    L+PYL +P+Q  S +ILK+M R
Sbjct: 222 SLCRQLGNLSVWVRLHYVYPYPHVDDLIPLMAEG---KLLPYLDIPLQHASPKILKTMKR 278

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
                   + I + R + P++ + S FIVGFPGET++DF+  +D +      +   FK+S
Sbjct: 279 PGKIDRTLERIQQWREICPELTLRSTFIVGFPGETEEDFQMLLDFLKAAQLDRVGCFKFS 338

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--G 426
           P  G P ++M +QV E VK ER     +  +E   +     +G+ + V++++   +   G
Sbjct: 339 PVEGAPATDMPDQVPEEVKEERFHRFMQVQQEISAARLQQKIGKTLSVIVDEVNMKGVIG 398

Query: 427 KLVGRSPWLQSVVLNSKNH----NIGDIIKVRITDVKISTLYG 465
           + +  +P +  VV          NIGD+I V ITD     L+G
Sbjct: 399 RSMVDAPEIDGVVYVENQSQSAVNIGDVISVTITDADEYDLWG 441


>gi|312888457|ref|ZP_07748031.1| SSU ribosomal protein S12P methylthiotransferase [Mucilaginibacter
           paludis DSM 18603]
 gi|311299085|gb|EFQ76180.1| SSU ribosomal protein S12P methylthiotransferase [Mucilaginibacter
           paludis DSM 18603]
          Length = 444

 Score =  375 bits (963), Expect = e-102,   Method: Composition-based stats.
 Identities = 123/457 (26%), Positives = 210/457 (45%), Gaps = 35/457 (7%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDA---DLIVLNTCHIREKAAE 78
           I   R  V + GC  N YDS  +        ++ V+   +    D+IV+NTC   + A +
Sbjct: 12  IKKPRVNVVTLGCSKNTYDSEILMGQLRGNSFDVVHESGELASDDIIVINTCGFIDNAKQ 71

Query: 79  KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPE 138
           +    + +   LK      G    V+V GC+++    E+      V+   G      L  
Sbjct: 72  ESIDTILQYSELKEQ----GKVGKVIVTGCLSERYKPELEAEITNVDAYFGTNDLQNLL- 126

Query: 139 LLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
                    + V  +Y  E   ERL      +       A+  I EGC++ C+FC +P  
Sbjct: 127 ---------QSVGANYKYELLGERLLTTPSHF-------AYFKISEGCNRPCSFCAIPLM 170

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258
           RG  +S  + Q+V +A  L  NG  E+ ++ Q++  + G  L G++    +LL  LS++ 
Sbjct: 171 RGKHLSTPMEQLVKDAENLARNGTKELVVIAQDLT-YYGLDLYGKR-NLDELLRRLSDVN 228

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           G+  +R   ++P      ++    +   +  Y+ +P+Q  SD +LKSM R  T  +   I
Sbjct: 229 GIEWIRLQYAYPSGFPMEVLDVMNERSNICNYMDMPLQHISDNMLKSMRRGITKQKTIDI 288

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           ++ IR   PDIA  +  I G+PGET  DF   MD V++  + +   F YS    T    +
Sbjct: 289 VNAIRDKVPDIAFRTTLITGYPGETQQDFEEMMDWVEETRFDRLGCFTYSHEEKTHAHQL 348

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PW 434
           ++ V + VK ER   + +  +      N   +G   +VLI+K  KE    VGR+    P 
Sbjct: 349 VDDVPDEVKQERADAIMEIQQGISFDKNQERIGHTYKVLIDK--KEGDYFVGRTEFDSPE 406

Query: 435 LQS-VVLNSKNHN--IGDIIKVRITDVKISTLYGELV 468
           + + V++++  H   +G  + V+I + +   LYG++V
Sbjct: 407 VDNEVLIDASKHYATVGSFVNVKIDNAEDFDLYGQIV 443


>gi|219871680|ref|YP_002476055.1| ribosomal protein S12 methylthiotransferase [Haemophilus parasuis
           SH0165]
 gi|219691884|gb|ACL33107.1| MiaB-like tRNA modifying enzyme YliG [Haemophilus parasuis SH0165]
          Length = 443

 Score =  375 bits (963), Expect = e-102,   Method: Composition-based stats.
 Identities = 132/463 (28%), Positives = 212/463 (45%), Gaps = 41/463 (8%)

Query: 21  CIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKV 80
              P   FV S GC  N+ DS R+     S GY  ++S + ADL+++NTC   + A ++ 
Sbjct: 2   SSAPNIGFV-SLGCPKNLVDSERILTELRSDGYNIISSYEGADLVIVNTCGFIDSAEQES 60

Query: 81  YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140
              +G                 V+V GC+  A+  +I    P V  + GP +Y  + + +
Sbjct: 61  LESIGEALEANGK---------VIVTGCLG-AKENQIREVHPKVLEITGPHSYEAVMKHV 110

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
            +              E       +   G        A+L I EGCD  CTFC++P  RG
Sbjct: 111 HKY---------VPKPEYNPYVSLVPKQGIKLTPKHYAYLKISEGCDHRCTFCIIPSMRG 161

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE------------KCTFS 248
              SR + QV+DEA++L+D+GV E+ ++ Q+ +A+       E            K    
Sbjct: 162 DLDSRPIVQVLDEAKRLVDSGVKELLIVSQDTSAYALDKKKEEGTKTVFWNGMPIKNNLI 221

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
            L   L  +   +RL Y   +P       + A G    L+PYL +P+Q  S +ILK+M R
Sbjct: 222 TLCEQLGSMGVWIRLHYVYPYPHVDDLIPLMAQG---KLLPYLDIPLQHASPKILKAMKR 278

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
             +     + I + R + PD+ + S FIVGFPGET++DF+  +D + +    +   FK+S
Sbjct: 279 PGSIDRTLERIKKWREICPDLTLRSTFIVGFPGETEEDFQMLLDFLKEAQLDRVGCFKFS 338

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--G 426
           P  G   + M +QV E VK ER     +  ++         +G+ + V++++  KE   G
Sbjct: 339 PVDGAVATEMEDQVPEEVKEERFHRFMQLQQQISADRLQQKIGRPLSVIVDEIDKEGIIG 398

Query: 427 KLVGRSPWLQSVV----LNSKNHNIGDIIKVRITDVKISTLYG 465
           + +  +P +  VV    L+     +G II V IT      L+G
Sbjct: 399 RSMADAPEIDGVVYVDNLSGAEVKVGQIISVTITQADEYDLWG 441


>gi|297570482|ref|YP_003691826.1| MiaB-like tRNA modifying enzyme YliG [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296926397|gb|ADH87207.1| MiaB-like tRNA modifying enzyme YliG [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 463

 Score =  375 bits (963), Expect = e-102,   Method: Composition-based stats.
 Identities = 127/468 (27%), Positives = 208/468 (44%), Gaps = 30/468 (6%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +   + S GC  N+ DS  M      +G   V+   +AD++++NTC   + A E+    +
Sbjct: 2   KTIHLTSLGCPKNLVDSELMLGQLVEEGLRPVSEPGEADVLLVNTCGFIQSAVEEGIDTI 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             +   K S       + VVV GC+ Q  G  ++   P V++ +G +    +   L    
Sbjct: 62  LGLIEQKKS-----PAVRVVVCGCLVQRYGSGLVEELPEVDLFLGTEEVSSIAARLRALE 116

Query: 145 FGKRVVDTDY--------------SVEDKFERLSIVDGGYN-RKRGVTAFLTIQEGCDKF 189
            G+   ++                 V+D    L               A+L I EGC   
Sbjct: 117 EGRAAPESGSVPAGAPAADSLRYRPVDDLQRFLPNATLPRRLTTPAHRAYLKITEGCGNR 176

Query: 190 CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSD 249
           C++C++P  RG   SR  + ++ EAR L   GV E+TL+ Q++ A  G  L        D
Sbjct: 177 CSYCMIPAIRGPLRSRRPADILHEARALAAAGVKELTLVAQDLTA-YGLDLGPGGPRLPD 235

Query: 250 LLYSLSEIKG---LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306
           LL  L        +  +R    +P  ++D L++       ++PY  LP Q  +D +LK+M
Sbjct: 236 LLAQLHRELPAAQVPWIRLLYLYPSRVNDELLELVAANPRILPYFDLPFQHVADPVLKAM 295

Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
           NR +     R+++DR+R + P   I S F+VGFPGE ++D  A    +          F 
Sbjct: 296 NRPYGEALVRELVDRVRRLVPRAVIRSTFMVGFPGEREEDVEALAAFLRDCRLEHVGMFT 355

Query: 367 YSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG 426
           Y    G+  + +  QV E +K +R   L     E  ++ N A VGQ+ EVL+E    E  
Sbjct: 356 YCNEEGSAAATLPGQVPEELKEQRFQRLMALQAEISLAANQARVGQVEEVLVEGVSSETE 415

Query: 427 KLV-GR----SPWLQS-VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            L+ GR    +P +   V +N  N   G++++V I++     L G +V
Sbjct: 416 LLLEGRAWFQAPEIDGCVYINEGNCRAGELVRVLISEAHPYDLVGGIV 463


>gi|332673110|gb|AEE69927.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Helicobacter pylori 83]
          Length = 437

 Score =  375 bits (963), Expect = e-102,   Method: Composition-based stats.
 Identities = 141/449 (31%), Positives = 241/449 (53%), Gaps = 23/449 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + ++++ GC MN  DS  +        Y+  +    ADLI++NTC +REK   K++S +G
Sbjct: 2   KVYIETMGCAMNSRDSEHLLSELSKLDYKETSDPKIADLILINTCSVREKPERKLFSEIG 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           +   +K        +  + V GC A   G +IL+++P V+ V+G +   ++ +++ + + 
Sbjct: 62  QFAKIKK------PNAKIGVCGCTASHMGADILKKAPSVSFVLGARNVSKISQVIHKEKA 115

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            +  +D D S        +     + +K  + + L I  GCDK C +C+VP+TRG EIS 
Sbjct: 116 VEVAIDYDES--------AYAFEFFEKKAQIRSLLNISIGCDKKCAYCIVPHTRGKEISI 167

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL-DGEKCTFSDLLYSLSEIKGLVRLR 264
            +  ++ EA KL  NG  E+ LLGQNVN +  +   +  K  FSDLL  LSEI+G+ R+R
Sbjct: 168 PMDLILKEAEKLASNGTKELMLLGQNVNNYGTRFSSEHAKVDFSDLLDKLSEIQGIERIR 227

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +T+ HP  M+D  ++       +   +H+P+QSGS  +LK M R ++   +   ++R+++
Sbjct: 228 FTSPHPLHMNDAFLERFAKNPKVCKSIHMPLQSGSSAVLKMMRRGYSKEWFLNRVERLKA 287

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           + P++ IS+D IVGFP E+D DF  TM++++K+ +   +SF YSPR  T      E+V  
Sbjct: 288 LVPEVGISTDIIVGFPNESDKDFEDTMEVLEKVRFDTLYSFIYSPRPFTEAGAWKERVPL 347

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV---GRSPWLQSVVLN 441
            V + RL  LQ + +E         VG+   VL+E   +   ++V   GRS   + + + 
Sbjct: 348 EVSSSRLERLQNRHKEILEEKAKLEVGKTHVVLVENRREINNQIVGFEGRSDTGKFIEVA 407

Query: 442 -SKNHNIGDIIKVRITDVKISTLYGELVV 469
             +  N G++++V I         G L+ 
Sbjct: 408 CKEKRNPGELVRVEIVSHS----KGRLIA 432


>gi|288927530|ref|ZP_06421377.1| 2-methylthioadenine synthetase [Prevotella sp. oral taxon 317 str.
           F0108]
 gi|288330364|gb|EFC68948.1| 2-methylthioadenine synthetase [Prevotella sp. oral taxon 317 str.
           F0108]
          Length = 431

 Score =  375 bits (963), Expect = e-102,   Method: Composition-based stats.
 Identities = 120/450 (26%), Positives = 208/450 (46%), Gaps = 34/450 (7%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDA--DLIVLNTCHIREKAAEKVYSFL 84
             + + GC  N+ DS  +   F + GY  V+       +++V+NTC   E A E+  + +
Sbjct: 6   VDIITMGCSKNLVDSELLMKQFEANGYHCVHDSKKPNGEIVVINTCGFIESAKEESINTI 65

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
                 K      G    + V GC++Q   +E+ +  P V+   G   Y  L + L    
Sbjct: 66  LEFAQAKEE----GRLKQLYVMGCLSQRYQKELEQEIPQVDKFYGKFNYKNLLKDL---- 117

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            GK V+ +                         A+L I EGCD+ C +C +P   G  +S
Sbjct: 118 -GKGVIASCNGTRSI------------TTPRHYAYLKISEGCDRSCAYCAIPLITGKHVS 164

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R   ++++E R L+  GV E  ++ Q +  + G  LDG++   +DL+  +++IKG+  +R
Sbjct: 165 RPKEEILEEVRSLVSQGVKEFQIIAQELT-YYGVDLDGQRQ-ITDLISEMADIKGVEWIR 222

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
              ++P      L++   +   +  Y+ + +Q  SD +L  M+R  T  +  ++I RIR 
Sbjct: 223 LHYAYPNQFPHSLLQVIKNKPNVCKYIDIALQHISDNMLTRMHRHVTKAQTMELIKRIRE 282

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN-MLEQVD 383
             P I + +  +VGFPGET+DDF   +D V    + +  +F YS   GT  +    + + 
Sbjct: 283 EIPGIHLRTTLMVGFPGETEDDFNELLDFVKWARFERMGAFAYSEEEGTYSAKHYEDDIP 342

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQS-V 438
           + VK  RL  L    ++         VG+ + V+I++  KE    +GR+    P +   V
Sbjct: 343 DEVKQRRLDQLMALQQDISAEVEAQKVGKTLRVIIDR--KEGDYYIGRTEWSSPEVDPEV 400

Query: 439 VLNSK-NHNIGDIIKVRITDVKISTLYGEL 467
           ++ +     +G    VRITD +   LYGE+
Sbjct: 401 LIPATVKLRVGSFYNVRITDSEEFDLYGEI 430


>gi|238018965|ref|ZP_04599391.1| hypothetical protein VEIDISOL_00825 [Veillonella dispar ATCC 17748]
 gi|237864449|gb|EEP65739.1| hypothetical protein VEIDISOL_00825 [Veillonella dispar ATCC 17748]
          Length = 453

 Score =  375 bits (963), Expect = e-102,   Method: Composition-based stats.
 Identities = 122/456 (26%), Positives = 211/456 (46%), Gaps = 19/456 (4%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + ++    S GC  N+ D+  M  +    GY     + +ADLIV+NTC   EKA  +  +
Sbjct: 6   MGKKLGYVSLGCAKNLVDTEVMLGLLKDNGYTITEDLSEADLIVVNTCTFIEKAKAESIN 65

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +  +   K     +G    ++VAGC++Q   +E+ +  P ++ ++G   + ++   ++ 
Sbjct: 66  TILEVAQYKE----DGKCKGLIVAGCLSQQYQDELFQEIPEIDALIGTGAWDQIMVAVDA 121

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
              G R    +       ER+  +          +A++ I EGC+  CTFC++P  RG  
Sbjct: 122 IEHGNRSCIMENITNIYDERMPRIQ----TTPRYSAYVKIAEGCNNGCTFCIIPKVRGAF 177

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR++  +  E  +L  +GV E+ L+ Q+  +  G  L+  K   + LL  L+ ++G+  
Sbjct: 178 RSRTIESIKAEVERLAASGVKEVVLIAQDTTS-YGIDLNDGKPLLTTLLKELTAVEGIEW 236

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R    +P   SD L+    +   L  Y+ +P+Q  ++ ILK MNRR    +  +++ +I
Sbjct: 237 IRMLYLYPTFFSDELLDIIVNEPKLCKYVDIPLQHVNNDILKQMNRRDDRNDIERLLKKI 296

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+    I + +  IVGFPGETD+ F    D V +I +     F YS   GTP     +QV
Sbjct: 297 RNAPTHITLRTSIIVGFPGETDEQFEELCDFVKEIKFDNMGVFTYSQEEGTPAGAREDQV 356

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLV--GR----SPWL 435
            E VK ER   L           N    G +   ++E+    E G L+  GR    +P +
Sbjct: 357 PEEVKEERYHVLMSIQAAISEENNRDLEGTVDYAMVEEIEDGENGTLLAKGRLKSQAPDV 416

Query: 436 QSVVLN---SKNHNIGDIIKVRITDVKISTLYGELV 468
              +      +    GDI+KV++       +   +V
Sbjct: 417 DGNMYIEDCGEEVQPGDILKVQVEQGFAYDVVATVV 452


>gi|311280283|ref|YP_003942514.1| MiaB-like tRNA modifying enzyme YliG [Enterobacter cloacae SCF1]
 gi|308749478|gb|ADO49230.1| MiaB-like tRNA modifying enzyme YliG [Enterobacter cloacae SCF1]
          Length = 441

 Score =  375 bits (963), Expect = e-102,   Method: Composition-based stats.
 Identities = 130/452 (28%), Positives = 219/452 (48%), Gaps = 34/452 (7%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC  N+ DS R+     ++GY+ V S D+AD++++NTC   + A ++    +G
Sbjct: 9   KIGFVSLGCPKNLVDSERILTELRTEGYDVVPSYDNADMVIVNTCGFIDSAVQESLEAIG 68

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
               LK +         V+V GC+  A+ ++I    P V  + GP +Y ++ + +     
Sbjct: 69  EA--LKENGK-------VIVTGCLG-AKEDQIREVHPKVLEITGPHSYEQVLQHVHHY-- 116

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                       + F  L + + G        A+L I EGC+  CTFC++P  RG   SR
Sbjct: 117 ------VPKPQHNPFLSL-VPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGDLDSR 169

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNA------WRGKGLDGE--KCTFSDLLYSLSEI 257
            +  V+ EA++L D GV E+ ++ Q+ +A       R    +GE  K +   L   L+++
Sbjct: 170 PIGDVLAEAKRLADAGVKELLVISQDTSAYGVDVKHRTGFYNGEPVKTSMVSLCEQLAKL 229

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
              VRL Y   +P       + A G    ++PYL +P+Q  S RILK M R  +      
Sbjct: 230 GVWVRLHYVYPYPHVDDVIPLMAEG---KILPYLDIPLQHASPRILKLMKRPGSVDRQLA 286

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
            I + R + P++ + S FIVGFPGET+DDF+  +D + +    +   FKYSP  G   + 
Sbjct: 287 RIKQWREICPELTLRSTFIVGFPGETEDDFQMLLDFLKEARLDRVGCFKYSPVEGAAANE 346

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPWL 435
           + +QV E VK ER     +  ++         +G+ I V+I++  +E   G+ +  +P +
Sbjct: 347 LADQVPEEVKEERWNRFMQLQQQISAERLQEKIGREIMVIIDEVDEEGAIGRSMADAPEI 406

Query: 436 QS-VVLNSK-NHNIGDIIKVRITDVKISTLYG 465
              V LN +     GD+++V++       L+G
Sbjct: 407 DGAVYLNGETRVKPGDVLRVKVEHADEYDLWG 438


>gi|317012111|gb|ADU82719.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Helicobacter
           pylori Lithuania75]
          Length = 437

 Score =  375 bits (963), Expect = e-102,   Method: Composition-based stats.
 Identities = 142/449 (31%), Positives = 241/449 (53%), Gaps = 23/449 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + ++++ GC MN  DS  +        Y+  +    ADLI++NTC +REK   K++S +G
Sbjct: 2   KVYIETMGCAMNSRDSEHLLSELSKLDYKETSDPKTADLILINTCSVREKPERKLFSEIG 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           +   +K        +  + V GC A   G +IL+++P V+ V+G +   ++ +++ + + 
Sbjct: 62  QFAKIKK------PNAKIGVCGCTASHMGADILKKAPSVSFVLGARNVSKISQVIHKEKA 115

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            +  +D D S        +     + +K  + + L I  GCDK C +C+VP+TRG EIS 
Sbjct: 116 VEVAIDYDES--------AYAFEFFEKKAQIRSLLNISIGCDKKCAYCIVPHTRGKEISI 167

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL-DGEKCTFSDLLYSLSEIKGLVRLR 264
            +  ++ EA KL +NG  E+ LLGQNVN +  +   +  K  FSDLL  LSEI G+ R+R
Sbjct: 168 PMDLILKEAEKLANNGTKELMLLGQNVNNYGVRFSSEHAKVDFSDLLDKLSEISGIERIR 227

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +T+ HP  M+D  ++       +   +H+P+QSGS  +LK M R ++   +   ++R+++
Sbjct: 228 FTSPHPLHMNDAFLERFAKNPKVCKSIHMPLQSGSSAVLKMMRRGYSKEWFLNRVERLKA 287

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           + P++ IS+D IVGFP E+D DF  TM++++K+ +   +SF YSPR  T      E+V  
Sbjct: 288 LVPEVGISTDIIVGFPNESDKDFEDTMEVLEKVRFDTLYSFIYSPRPFTEAGAWKERVPL 347

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV---GRSPWLQSVVLN 441
            V + RL  LQ + +E         VG+   VL+E   +   ++V   GRS   + + + 
Sbjct: 348 EVSSSRLERLQNRHKEILEEKAKLEVGKTHVVLVENRREMDNQIVGFEGRSDTGKFIEVT 407

Query: 442 -SKNHNIGDIIKVRITDVKISTLYGELVV 469
             +  N G+++KV I         G L+ 
Sbjct: 408 CKEKRNPGELVKVEIISHS----KGRLIA 432


>gi|308184072|ref|YP_003928205.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Helicobacter
           pylori SJM180]
 gi|308059992|gb|ADO01888.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Helicobacter
           pylori SJM180]
          Length = 437

 Score =  375 bits (963), Expect = e-102,   Method: Composition-based stats.
 Identities = 141/445 (31%), Positives = 239/445 (53%), Gaps = 19/445 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + ++++ GC MN  DS  +        Y+  +    ADLI++NTC +REK   K++S +G
Sbjct: 2   KVYIETMGCAMNSRDSEHLLSELSKLDYKETSDPKTADLILINTCSVREKPERKLFSEIG 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           +   +K        +  + V GC A   G +IL+++P V+ V+G +   ++ +++ + + 
Sbjct: 62  QFAKIKK------PNAKIGVCGCTASHMGADILKKAPSVSFVLGARNVSKISQVIHKEKA 115

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            +  +D D S        +     + +K  + + L I  GCDK C +C+VP+TRG EIS 
Sbjct: 116 VEVAIDYDES--------AYAFEFFEKKTQIRSLLNISIGCDKKCAYCIVPHTRGKEISI 167

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL-DGEKCTFSDLLYSLSEIKGLVRLR 264
            +  ++ EA KL  NG  E+ LLGQNVN +  +   +  K  FSDLL  LSEI+G+ R+R
Sbjct: 168 PMDLILKEAEKLAHNGTKELMLLGQNVNNYGVRFSSEHAKVDFSDLLDKLSEIQGIERIR 227

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +T+ HP  M+D  ++       +   +H+P+QSGS  +LK M R ++   +   ++R+++
Sbjct: 228 FTSPHPLHMNDAFLERFAKNPKVCKSIHMPLQSGSSAVLKMMRRGYSKEWFLNRVERLKA 287

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           + P++ IS+D IVGFP E+D DF  TM++++K+ +   +SF YSPR  T      E+V  
Sbjct: 288 LVPEVGISTDIIVGFPNESDKDFEDTMEVLEKVRFDTLYSFIYSPRPFTEAGAWKERVPL 347

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV---GRSPWLQSVVLN 441
            V + RL  LQ + +E         VG+   VL+E   +   ++V   GRS   + + + 
Sbjct: 348 EVSSSRLERLQNRHKEILEEKAKLEVGKTHVVLVENRREMDDQIVGFEGRSDTGKFIEVT 407

Query: 442 -SKNHNIGDIIKVRITDVKISTLYG 465
             +  N G+++KV I       L  
Sbjct: 408 CKEKRNPGELVKVEIISHSKGRLMA 432


>gi|307824406|ref|ZP_07654631.1| MiaB-like tRNA modifying enzyme YliG [Methylobacter tundripaludum
           SV96]
 gi|307734390|gb|EFO05242.1| MiaB-like tRNA modifying enzyme YliG [Methylobacter tundripaludum
           SV96]
          Length = 436

 Score =  375 bits (963), Expect = e-102,   Method: Composition-based stats.
 Identities = 133/458 (29%), Positives = 204/458 (44%), Gaps = 36/458 (7%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
            PQ  F+ S GC   + DS R+     S+GY    +  DADL+V+NTC   + A E+   
Sbjct: 3   APQIGFI-SLGCPKALVDSERILTKLRSEGYTISPTYQDADLVVVNTCGFIDAAVEESLD 61

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +G                 V+V GC+   E  EI  R P V  V G      +   +  
Sbjct: 62  SIGEALAQNGK---------VIVTGCLGSRE-AEIRERHPQVLKVTGAHALEEVVAAVHE 111

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
                          D F  L    G     R   A+L I EGC+  CTFC++P  RG  
Sbjct: 112 HLP---------PPHDPFISLVPPQGIKLTPRHY-AYLKISEGCNHRCTFCIIPSMRGDL 161

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYSL 254
           +SR +  V+ EA +L + GV E+ ++ Q+ +A+      + +   G   +  F DL  +L
Sbjct: 162 VSRPVDDVMLEAERLANAGVKELLVVSQDTSAYGLDLKYQSRDWKGRSVRTRFYDLAEAL 221

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
            ++   +R+ Y   +P       + A G    ++PYL +P Q  + RILK M R      
Sbjct: 222 GDLGIWIRMHYVYPYPHVDEVIPLMAEG---KILPYLDIPFQHANSRILKLMKRPAAGEN 278

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
             + I   R + PDI + S FIVGFPGET+ +F   +D + +    +   F YSP  G  
Sbjct: 279 NLERIKAWREICPDITLRSTFIVGFPGETEQEFEQLLDFMSEAQMDRVGCFAYSPVKGAV 338

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRS 432
            +++ +QV E VK ERL        E   +     VG+I  VLI++  +E    +    +
Sbjct: 339 ANDLPDQVPEEVKQERLARFMAHQAEISAARLQQRVGRIETVLIDEVVEEGAVARSKADA 398

Query: 433 PWLQS-VVLNSKNHN-IGDIIKVRITDVKISTLYGELV 468
           P +   V ++   H  +GD + V + +     L+G LV
Sbjct: 399 PEIDGQVFIDGATHLKVGDFVDVELEEADEYDLWGRLV 436


>gi|86133829|ref|ZP_01052411.1| MiaB-like tRNA modifying enzyme YliG [Polaribacter sp. MED152]
 gi|85820692|gb|EAQ41839.1| MiaB-like tRNA modifying enzyme YliG [Polaribacter sp. MED152]
          Length = 451

 Score =  375 bits (963), Expect = e-102,   Method: Composition-based stats.
 Identities = 123/461 (26%), Positives = 217/461 (47%), Gaps = 34/461 (7%)

Query: 17  IVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSM--DDADLIVLNTCHIRE 74
           +  + I   +  V + GC  NVYDS  +     + G   V+    DD +++V+NTC    
Sbjct: 1   MRTKTIKKNKINVVTLGCSKNVYDSEVLMGQLKANGKNVVHEDVNDDGNIVVINTCGFIG 60

Query: 75  KAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYY 134
           KA E+    +      K +    G    V V+GC+++    ++    P V+   G     
Sbjct: 61  KAKEESIDTILHYAKRKEA----GEVDKVFVSGCLSERYKPDLEAEIPNVDQYFGTHDL- 115

Query: 135 RLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCV 194
             P LL       +V++ DY  E   ERL+     Y       A+L I EGC++ C+FC 
Sbjct: 116 --PNLL-------KVLEADYKHELIGERLTTTPKHY-------AYLKIAEGCNRPCSFCA 159

Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL 254
           +P  RG   S  +  +V EA KL + G+ EI L+ Q++  + G  +  +K   ++LL +L
Sbjct: 160 IPLMRGKHRSTPIEDLVTEATKLAEKGIKEIMLIAQDLT-YYGLDIY-KKRALAELLEAL 217

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
            ++ G+  +R   + P      +++       +  YL +P+Q  +  +LKSM R  T  +
Sbjct: 218 VKVDGIEWIRMHYAFPTGFPMDVLEVMKREPKVCNYLDIPLQHINTELLKSMKRGTTHEK 277

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
              +I + R   P++AI +  IVG+PGET++ F+   D V+++ + +  +F+YS    T 
Sbjct: 278 TTALIHKFREAVPEMAIRTTLIVGYPGETEEMFQELKDWVEEMRFERLGAFEYSHEENTG 337

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS-- 432
              + + V   VK +R+  + +   +     N   VG+    L ++  K+     GR+  
Sbjct: 338 AYVLEDDVPAEVKFKRVNEIMEVQSQISWELNQQKVGKTFRCLFDR--KDGEYFYGRTES 395

Query: 433 --PWLQS-VVLNSKNH--NIGDIIKVRITDVKISTLYGELV 468
             P + + V+++++ H   IG+ I V I +     LYG  V
Sbjct: 396 DSPDVDNDVLVDAREHYIKIGEFIDVEIYEAGDYDLYGTPV 436


>gi|317179336|dbj|BAJ57124.1| putative ATP-binding protein [Helicobacter pylori F30]
          Length = 437

 Score =  375 bits (963), Expect = e-102,   Method: Composition-based stats.
 Identities = 141/449 (31%), Positives = 242/449 (53%), Gaps = 23/449 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + ++++ GC MN  DS  +        Y+  +    ADLI++NTC +REK   K++S +G
Sbjct: 2   KVYIETMGCAMNSRDSEHLLSELSKLDYKETSDPKVADLILINTCSVREKPERKLFSEIG 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           +   +K        +  + V GC A   G +IL+++P V+ V+G +   ++ +++ + + 
Sbjct: 62  QFAKIKK------PNAKIGVCGCTASHMGADILKKAPSVSFVLGARNVSKISQVIHKEKA 115

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            +  +D D S        +     + +K  + + L I  GCDK C +C+VP+TRG EIS 
Sbjct: 116 VEVAIDYDES--------AYAFEFFEKKAQIRSLLNISIGCDKKCAYCIVPHTRGKEISI 167

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL-DGEKCTFSDLLYSLSEIKGLVRLR 264
            +  ++ EA KL  NG  E+ LLGQNVN +  +   +  K  FSDLL  LSEI+G+ R+R
Sbjct: 168 PMDLILKEAEKLASNGTKELMLLGQNVNNYGARFSSEHAKVDFSDLLDKLSEIQGIERIR 227

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +T+ HP  M+D  ++       +   +H+P+QSGS  +LK M R ++   +   ++R+++
Sbjct: 228 FTSPHPLHMNDAFLERFAKNPKVCKSIHMPLQSGSSAVLKMMRRGYSKEWFLNRVERLKA 287

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           + P++ IS+D IVGFP E+D DF  TM++++K+ +   +SF YSPR  T      E+V  
Sbjct: 288 LVPEVGISTDIIVGFPNESDKDFEDTMEVLEKVRFDTLYSFIYSPRPFTEAGAWKERVPL 347

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV---GRSPWLQSVVLN 441
            V + RL  LQ + +E         VG+   VL+E   +   ++V   GRS   + + + 
Sbjct: 348 EVSSSRLERLQNRHKEILEEKAKLEVGKTHVVLVENRREINNQIVGFEGRSDTGKFIEVA 407

Query: 442 -SKNHNIGDIIKVRITDVKISTLYGELVV 469
             +  N+G++++V I         G L+ 
Sbjct: 408 CKEKRNLGELVRVEIVSHS----KGRLIA 432


>gi|153815340|ref|ZP_01968008.1| hypothetical protein RUMTOR_01574 [Ruminococcus torques ATCC 27756]
 gi|145847402|gb|EDK24320.1| hypothetical protein RUMTOR_01574 [Ruminococcus torques ATCC 27756]
          Length = 442

 Score =  375 bits (963), Expect = e-102,   Method: Composition-based stats.
 Identities = 136/447 (30%), Positives = 241/447 (53%), Gaps = 15/447 (3%)

Query: 13  MVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHI 72
           M+ +I  +  + ++  + + GC++N Y++  M++M    GYE V   + AD+ ++NTC +
Sbjct: 1   MIERIGKRGKLMKKAALHNLGCKVNAYETEAMQEMLEQAGYEIVPFKEGADVYIINTCTV 60

Query: 73  REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT 132
              A  K    L R R L         D +VV AGC  QA  +E     P +++V+G   
Sbjct: 61  TNIADRKSRQMLHRARKL-------NPDAVVVAAGCYVQA--QEGKEIDPCIDIVIGNNH 111

Query: 133 YYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRK-RGVTAFLTIQEGCDKFCT 191
              LPELL++    ++   T+Y++ED        +    +      A++ +Q+GC++FCT
Sbjct: 112 KKDLPELLKQYEM-EKSGHTEYAMEDINRTKEYEELHLTKPGDHTRAYIKVQDGCNQFCT 170

Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLL 251
           +C++PY RG   SR    V++E R L  NG  E+ L G ++++  G   DG++    DL+
Sbjct: 171 YCIIPYARGRVRSRQTKDVLEEVRDLAGNGYKEVVLTGIHLSS-YGIDFDGQRHLL-DLI 228

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
             + +++G+ R+R  +  P  +++   K   ++  + P+ HL +QSG D  LK MNR++T
Sbjct: 229 KEVHKVEGIERIRLGSLEPGIITEEFAKELSEMPKVCPHFHLSLQSGCDATLKRMNRKYT 288

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
           + EY      +R      A+++D IVGFPGET+++F A+   VD++ + +   FKYS R 
Sbjct: 289 SGEYYDRCQILRKYFDHPALTTDVIVGFPGETEEEFEASYAFVDRVDFYETHIFKYSKRE 348

Query: 372 GTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK--LV 429
           GT  + M  Q+DE +K ER   +      ++ ++ D+ +G+ +EVL E+  + +GK  + 
Sbjct: 349 GTKAAVMDGQIDEKIKGERSARMIALGERKKKAYEDSFIGKEVEVLFEERAQIEGKAVMT 408

Query: 430 GRSPWLQSVVLNSKNHNIGDIIKVRIT 456
           G +     + L ++ +    I+KVRI 
Sbjct: 409 GHTKEYMKIALETEKNISNCIVKVRIE 435


>gi|157164991|ref|YP_001467015.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Campylobacter concisus
           13826]
 gi|229890496|sp|A7ZE07|MIAB_CAMC1 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|112800061|gb|EAT97405.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Campylobacter concisus
           13826]
          Length = 433

 Score =  375 bits (963), Expect = e-101,   Method: Composition-based stats.
 Identities = 154/448 (34%), Positives = 242/448 (54%), Gaps = 20/448 (4%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++ F+++ GC MNV DS  +       + Y    ++++ADLI++NTC +REK   K++
Sbjct: 1   MSKKLFIQTLGCAMNVRDSEHIIAELSQKEDYSLTQNIEEADLILINTCSVREKPVHKLF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S +G     K    K      + V GC A   G EI +R+P V+ V+G +   ++ + + 
Sbjct: 61  SEVGAFEKAKKRGAK------IGVCGCTASHLGSEIFKRAPYVDFVLGARNVSKITKAVN 114

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
             +F    ++ D S     E          R     + + I  GCDK CT+C+VP+TRG 
Sbjct: 115 TPKFISTDINHDESEYAFGEF---------RGSPYKSHINISIGCDKKCTYCIVPHTRGD 165

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG--EKCTFSDLLYSLSEIKG 259
           EIS   S ++ E  K   +G  EI LLGQNVN   GK   G  E   FSDLL  +SEI+G
Sbjct: 166 EISIPSSLILKEVEKAAKSGAKEIFLLGQNVN-NYGKRFSGVQENIDFSDLLVKISEIEG 224

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           + R+R+T+ HP  M D  ++   +   +   +H+P+QSG+ ++L+ M R +T   +    
Sbjct: 225 VERIRFTSPHPLHMDDKFLEIFTNNPKICKSMHMPLQSGNTKVLREMKRGYTKEWFLDRA 284

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            R+R + PD++IS+D IV FPGE+D++F  TMD+++++ + Q FSFKYSPR  T  +  +
Sbjct: 285 LRLRKMCPDVSISTDIIVAFPGESDNEFEDTMDVLEQVRFEQIFSFKYSPRPLTKAATFI 344

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV 439
            Q+D+   +ERL  LQ +  E       A   +I +V  E+  +  G + GRS     V 
Sbjct: 345 NQIDDKTASERLTRLQNRHSEILDEIVAAQKDKIFDVYFEEL-RANGGVAGRSFNNFLVQ 403

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGEL 467
           ++     +G   K +IT+ K   LYGEL
Sbjct: 404 VDGSEELLGTTQKAKITNPKRMVLYGEL 431


>gi|311695350|gb|ADP98223.1| MiaB-like tRNA modifying enzyme YliG [marine bacterium HP15]
          Length = 448

 Score =  375 bits (963), Expect = e-101,   Method: Composition-based stats.
 Identities = 135/455 (29%), Positives = 216/455 (47%), Gaps = 33/455 (7%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC   + DS R+       GY+ V S DDAD++V+NTC   + A ++    +G
Sbjct: 15  KVGFISLGCPKALVDSERILTQLRLDGYDVVPSYDDADIVVVNTCGFIDAAKQESLDAIG 74

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                         +  V+V GC+   E ++I    P V  V GP  Y  +   + +   
Sbjct: 75  EA---------ISENGKVIVTGCMG-VEADKIRDTHPGVLAVSGPHAYEEVVGAVHQFVP 124

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            K+         D F  L    G     R   A+L I EGC+  CTFC++P  RG  +SR
Sbjct: 125 QKKQ-------HDPFTDLVPPQGIKLTPRHY-AYLKISEGCNHRCTFCIIPSMRGDLVSR 176

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYSLSEI 257
            +  V+DEA++L+D GV E+ ++ Q+ +A+      R     G   K     L  +L E+
Sbjct: 177 PIGDVMDEAQRLVDAGVKELLVISQDTSAYGVDTKYRTGFWQGRPLKTKMQSLCEALGEM 236

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
              VRL Y   +P       + A G    ++PYL +P Q  S ++LK+M R     +  +
Sbjct: 237 GVWVRLHYVYPYPHVDDIIPLMAEG---KILPYLDIPFQHASPKVLKAMKRPAHDSKTLE 293

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
            I + R + P++ I S FIVGFPGET++DF+  +D +D+    +  +FKYSP  G   + 
Sbjct: 294 RIRKWREICPELTIRSTFIVGFPGETEEDFQYLLDWLDEAQLDRVGAFKYSPVEGAKANE 353

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPWL 435
           +   V E VK ERL    +K  +   +   A +GQ I+VLI++  +E   G+    +P +
Sbjct: 354 LEGAVSEEVKEERLARFMEKQAKISAARLQAKIGQTIDVLIDEVDEEGAIGRSKADAPEI 413

Query: 436 QSVVL--NSKNHNIGDIIKVRITDVKISTLYGELV 468
             +V   +  +   G+I++  +       L+  LV
Sbjct: 414 DGMVYLNDETDLVPGEIVQAVVEHADEHDLWARLV 448


>gi|205355334|ref|ZP_03222105.1| hypothetical protein Cj8421_0457 [Campylobacter jejuni subsp.
           jejuni CG8421]
 gi|205346568|gb|EDZ33200.1| hypothetical protein Cj8421_0457 [Campylobacter jejuni subsp.
           jejuni CG8421]
          Length = 419

 Score =  375 bits (963), Expect = e-101,   Method: Composition-based stats.
 Identities = 149/435 (34%), Positives = 231/435 (53%), Gaps = 18/435 (4%)

Query: 36  MNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSR 94
           MNV DS  M       + Y     + +ADLI++NTC +REK   K++S +G    +K   
Sbjct: 1   MNVRDSEHMIAELTQKENYALTEDIKEADLILINTCSVREKPVHKLFSEVGGFEKVKKEG 60

Query: 95  IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDY 154
            K      + V GC A   G EI +R+P V+ V+G +   ++ + ++  +F    +D D 
Sbjct: 61  AK------IGVCGCTASHLGNEIFKRAPYVDFVLGARNISKITQAIKTPKFMGVDIDYDE 114

Query: 155 SVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEA 214
           S     +          R     +++ I  GCDK CT+C+VP+TRG EIS   + +  EA
Sbjct: 115 SEFAFADF---------RNSIYKSYINISIGCDKHCTYCIVPHTRGDEISIPFNIIYKEA 165

Query: 215 RKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
           +K ++ G  EI LLGQNVN +  +  +  +K  FSDLL  LS I+ L R+R+T+ HP  M
Sbjct: 166 QKAVEKGAKEIFLLGQNVNNYGKRFRNEHKKMDFSDLLEELSTIEDLERIRFTSPHPLHM 225

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
            D  ++   +   +   +H+P+QSGS  ILK+M R +T   Y     ++R + P+++IS+
Sbjct: 226 DDKFLEVFANNPKVCKSMHMPLQSGSSEILKAMKRGYTKEWYLNRALKLRELCPNVSIST 285

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLC 393
           D IV FPGE++ DF  TMD+++K+ + Q FSFKYS R  T  + M  Q+DE   + RL  
Sbjct: 286 DIIVAFPGESEKDFEETMDVLEKVRFEQIFSFKYSKRPLTKAATMPNQIDEETASRRLST 345

Query: 394 LQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKV 453
           LQ +  E           +  +VL E+  +    + GR+     V +      +G   +V
Sbjct: 346 LQNRHSEILDEIVKKQENKTFKVLFEEL-RAGNSIAGRTDNNFLVQVEGSEELLGQFKEV 404

Query: 454 RITDVKISTLYGELV 468
           +IT+ K   LYGE+V
Sbjct: 405 KITNAKRMVLYGEVV 419


>gi|308063131|gb|ADO05018.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Helicobacter
           pylori Sat464]
          Length = 437

 Score =  375 bits (962), Expect = e-101,   Method: Composition-based stats.
 Identities = 140/445 (31%), Positives = 239/445 (53%), Gaps = 19/445 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + ++++ GC MN  DS  +        Y+  +    ADLI++NTC +REK   K++S +G
Sbjct: 2   KVYIETMGCAMNSRDSEHLLSELSKLDYKETSDPKAADLILINTCSVREKPERKLFSEIG 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           +   +K        +  + V GC A   G +IL+++P V+ V+G +   ++ +++ + + 
Sbjct: 62  QFAKIKK------PNAKIGVCGCTASHMGADILKKAPSVSFVLGARNVSKISQVIHKEKA 115

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            +  +D D S        +     + +K  + + L I  GCDK C +C+VP TRG EIS 
Sbjct: 116 VEVAIDYDES--------AYAFEFFEKKAQIRSLLNISIGCDKKCAYCIVPRTRGKEISI 167

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL-DGEKCTFSDLLYSLSEIKGLVRLR 264
            +  ++ EA KL  NG  E+ LLGQNVN +  +   +  K  FSDLL  LSEI+G+ R+R
Sbjct: 168 PMDLILKEAEKLASNGTKELMLLGQNVNNYGARFSSEHAKVDFSDLLDKLSEIQGIERIR 227

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +T+ HP  M+D  ++       +   +H+P+QSGS+ +LK M R ++   +   ++R+++
Sbjct: 228 FTSPHPLHMNDAFLERFAKNPKVCKSIHMPLQSGSNAVLKMMRRGYSKEWFLNRVERLKA 287

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           + P++ IS+D IVGFP E+D DF  TM++++K+ +   +SF YSPR  T      E+V  
Sbjct: 288 LVPEVGISTDIIVGFPNESDKDFEDTMEVLEKVRFDTLYSFIYSPRPFTEAGAWKERVPL 347

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV---GRSPWLQSVVLN 441
            V + RL  LQ + +E         VG+   VL+E   +   ++V   GRS   + + + 
Sbjct: 348 EVSSSRLERLQNRHKEILEEKAKLEVGKTHVVLVENGREIDNQIVGFEGRSDTGKFIEVA 407

Query: 442 -SKNHNIGDIIKVRITDVKISTLYG 465
             +  N G++++V I       L  
Sbjct: 408 CKEKRNPGELVRVEIVSHSKGRLMA 432


>gi|317491378|ref|ZP_07949814.1| MiaB tRNA modifying enzyme YliG [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316920925|gb|EFV42248.1| MiaB tRNA modifying enzyme YliG [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 438

 Score =  375 bits (962), Expect = e-101,   Method: Composition-based stats.
 Identities = 128/454 (28%), Positives = 214/454 (47%), Gaps = 34/454 (7%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R    S GC  N+ DS R+     ++GY+ V   DDA+L+++NTC   + A ++    +G
Sbjct: 5   RIGFVSLGCPKNLVDSERILTELRTEGYDVVPRYDDAELVIVNTCGFIDSAVQESLEAIG 64

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                         +  V+V GC+  A+  +I    P V  + GP +Y  + + + +   
Sbjct: 65  EA---------LNENGKVIVTGCLG-AKENQIREVHPKVLEITGPHSYEAVLKHVHQY-- 112

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                       + F  L + + G        A+L I EGC+  CTFC++P  RG   SR
Sbjct: 113 ------VPKPTHNPFTSL-VPEQGVKLTPKHYAYLKISEGCNHRCTFCIIPSMRGDLDSR 165

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNA------WRGKGLDGE--KCTFSDLLYSLSEI 257
            +  V+DEA++L+D GV E+ ++ Q+ +A       R    +G+  K +   L   LS +
Sbjct: 166 PIGSVLDEAKRLVDAGVKELLVISQDTSAYGVDVKHRTGFWNGQPVKTSMISLCEQLSSL 225

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
              VRL Y   +P       + A G    ++PYL +P+Q  S +ILK M R        +
Sbjct: 226 GVWVRLHYVYPYPHVDDVIPLMAEG---KVLPYLDIPLQHASPKILKLMKRPGAVERTLE 282

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
            I R R   P + + S FIVGFPGET++DF+  +D + +    +   FK+SP  G   + 
Sbjct: 283 RIKRWRETCPQLTLRSTFIVGFPGETEEDFQMLLDFLSEAKLDRVGCFKFSPVEGAAANE 342

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPWL 435
           + +QV E VK ER     +  ++         VG  + V+I++  +E   G+ +  +P +
Sbjct: 343 LADQVPEEVKEERFHRFMQLQQQISAQRLQDKVGHTLPVIIDEVDEEGAIGRSMADAPEI 402

Query: 436 QSVVLNSKN--HNIGDIIKVRITDVKISTLYGEL 467
             VV  +      +GD++ V I +V    ++G +
Sbjct: 403 DGVVYLNGETKLKVGDVVNVTIENVDEYDMWGSV 436


>gi|229890682|sp|Q17YC7|MIAB_HELAH RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
          Length = 439

 Score =  375 bits (962), Expect = e-101,   Method: Composition-based stats.
 Identities = 146/449 (32%), Positives = 243/449 (54%), Gaps = 23/449 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + ++++ GC MN  DS  +        Y+  N    ADLI++NTC +REK   K++S +G
Sbjct: 3   KVYIETMGCAMNSRDSEHLLSELSKLDYKETNDPKIADLILINTCSVREKPERKLFSEIG 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           +   +K        +  + V GC A   G +IL++SP V+ V+G +   ++ +++ + + 
Sbjct: 63  QFAKIKK------PNAKIGVCGCTASHMGADILKKSPSVSFVLGARNVSKISQVIHKEKA 116

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            +  +D D S        S     + +K  V + L I  GCDK CT+C+VP+TRG EIS 
Sbjct: 117 VEVAIDYDES--------SYAFEFFEKKAEVRSLLNISIGCDKKCTYCIVPHTRGKEISI 168

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL-DGEKCTFSDLLYSLSEIKGLVRLR 264
            +  ++ EA KL +NG  E+ LLGQNVN +  +   +  K  FSDLL  LSEI G+ R+R
Sbjct: 169 PMDLILKEAEKLANNGTKELMLLGQNVNNYGVRFSSEHAKVNFSDLLDKLSEIPGIERIR 228

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +T+ HP  M+D  ++       +   +H+P+QSGS  +LK M R +    +   ++++++
Sbjct: 229 FTSPHPLHMNDEFLERFAKNPKVCKSIHMPLQSGSSAVLKMMRRGYNKEWFLNRVEKLKA 288

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           + P++ IS+D IVGFP E+D DF  TM++++K+ +   +SF YSPR  T      E+V  
Sbjct: 289 LVPEVGISTDIIVGFPNESDKDFEDTMEVLEKVCFDTLYSFIYSPRPFTEAGAWKERVPL 348

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV---GRSPWLQSVVLN 441
            V + RL  LQ + +E         VG+   VL+E   +  G++V   GRS   + + + 
Sbjct: 349 EVSSLRLERLQNRHKEILEEKARLEVGKTHVVLVENRHEVDGQIVGFEGRSDTGKFIEVT 408

Query: 442 -SKNHNIGDIIKVRITDVKISTLYGELVV 469
             +  N G++++V I       + G L+ 
Sbjct: 409 CKEKRNPGELVEVEIIS----HVKGRLMA 433


>gi|253826987|ref|ZP_04869872.1| putative 2-methylthioadenine synthetase [Helicobacter canadensis
           MIT 98-5491]
 gi|253510393|gb|EES89052.1| putative 2-methylthioadenine synthetase [Helicobacter canadensis
           MIT 98-5491]
          Length = 425

 Score =  375 bits (962), Expect = e-101,   Method: Composition-based stats.
 Identities = 148/440 (33%), Positives = 240/440 (54%), Gaps = 22/440 (5%)

Query: 36  MNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSR 94
           MN  DS  +       + Y       +ADLI++NTC +REK  +K++S +G+   +K   
Sbjct: 1   MNERDSEHIIAELEEKENYTLTEDPKEADLILINTCSVREKPEKKLFSEIGQYAKIKKED 60

Query: 95  IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDY 154
            K      + V GC A   G EIL++S  VN V+G +   ++ ++L +     RV   D 
Sbjct: 61  AK------IGVCGCTASHLGNEILKKSKAVNFVLGARNVSKISQILHK----DRVAWVDI 110

Query: 155 SVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEA 214
             +D     S           +   + I  GCDK CT+C+VP+TRG EIS     ++ EA
Sbjct: 111 DYDD-----STYVFSSKHNSTLKGMINISIGCDKQCTYCIVPHTRGNEISIPADLILKEA 165

Query: 215 RKLIDNGVCEITLLGQNVNAWRGKGL-DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
           +KL+DNG  EI LLGQNVN +  +   D  K  F+ LL  +S+I GL R+R+T+ HP  M
Sbjct: 166 KKLVDNGTKEILLLGQNVNNYGRRFSNDHRKINFTQLLNEISQINGLERIRFTSPHPLHM 225

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
            D  I    +   +   +H+P+QSGS +IL+ M R ++   +   + ++R++ PD++I +
Sbjct: 226 DDEFINEFANNPKICKAIHMPLQSGSTKILQKMKRGYSKEWFLDRVAKMRALIPDLSIGT 285

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ-----VDENVKA 388
           D IVGFP E+++DF  T+D+++K+ +   +SF YS R  T  +  L+      +DE +  
Sbjct: 286 DIIVGFPTESEEDFLDTLDVLEKVRFDTLYSFIYSTRPHTQAATWLDNGEIQLLDEEIAK 345

Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIG 448
            RL+ L+ + +E     N   +G+I  VL E + +E   L GRS   + + + +  + IG
Sbjct: 346 NRLMILKDRHKEILAQENAKQLGKIHPVLFESYDEENFLLEGRSDTNKLIRVKAGRNLIG 405

Query: 449 DIIKVRITDVKISTLYGELV 468
           +I  V+I+++K + L GEL+
Sbjct: 406 EICNVKISEIKGAQLIGELL 425


>gi|313895534|ref|ZP_07829090.1| ribosomal protein S12 methylthiotransferase RimO [Selenomonas sp.
           oral taxon 137 str. F0430]
 gi|312975660|gb|EFR41119.1| ribosomal protein S12 methylthiotransferase RimO [Selenomonas sp.
           oral taxon 137 str. F0430]
          Length = 442

 Score =  375 bits (962), Expect = e-101,   Method: Composition-based stats.
 Identities = 141/453 (31%), Positives = 225/453 (49%), Gaps = 23/453 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC  N+ D+  M  +    G E      +AD++++NTC   + A E+  + + 
Sbjct: 2   KAGFISLGCAKNLVDTEVMLGIMREHGIELTAEPAEADILIVNTCAFIQSAKEESITTVL 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            + + K      G    ++VAGC+ Q  G+++L   P  N ++G   + R+ E++E    
Sbjct: 62  GMADYKE----TGRCRSLIVAGCLGQRYGQQLLDEIPEANAIIGTGAWSRIMEVVEETLK 117

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKR---GVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           G+R+V          E  +I D    R R     TA++ I EGCD  C FC +P  RG  
Sbjct: 118 GRRLVIAG-------EDDTIYDANTPRLRTTPNYTAYVKIAEGCDHRCAFCAIPLIRGGF 170

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR++  +V EAR+L ++GV E+ L+ Q+ +A  G  L   K   + LL  L++I+ +  
Sbjct: 171 RSRAMEDIVSEARELAESGVRELVLIAQD-SANYGLDLY-RKPMLASLLRELAKIEKISW 228

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R   S+P+  SD LI+       ++ Y+ LP+Q   D +L+SMNR  T     ++I ++
Sbjct: 229 IRVLYSYPKYFSDELIEVFATEPKVVKYVDLPLQHAHDAVLRSMNRPDTRAGIERLIQKL 288

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R   P + I S FIVGFPGETD  ++A  D V+   + +   F YS    TP S M ++V
Sbjct: 289 RERIPGVTIRSTFIVGFPGETDTHYQALRDFVEAQRFDKLGIFTYSEEEDTPASLMRQKV 348

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKH-GKEKGKLVGRS----PWLQS 437
            E V  ER   L     +     N +   + I+VLIE    +++G  VGRS    P +  
Sbjct: 349 SEEVMQERYHDLMSLQSKISEEINISLENKEIDVLIEGRDSEQQGIAVGRSYREAPEVDG 408

Query: 438 VVLNSKNHN--IGDIIKVRITDVKISTLYGELV 468
            +    +    IGDI++VR+       + GE V
Sbjct: 409 QIYIEGDVGSCIGDIVRVRLLQGFTYDIVGEKV 441


>gi|309388923|gb|ADO76803.1| RNA modification enzyme, MiaB family [Halanaerobium praevalens DSM
           2228]
          Length = 438

 Score =  375 bits (962), Expect = e-101,   Method: Composition-based stats.
 Identities = 129/450 (28%), Positives = 238/450 (52%), Gaps = 19/450 (4%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + ++    + GC++N Y++  + D+F   GY+ V+  + AD+ ++N+C +  +AA K   
Sbjct: 3   MIKKAAFYTLGCKVNQYETEAVIDIFLENGYQIVDFSEKADVYIVNSCTVTNEAARKTRQ 62

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
              R +       ++  + LV + GC  QA  +E+      ++ V+G      +    E 
Sbjct: 63  IARRAK-------RKYSNSLVAIVGCYTQAFPDEVRN-IEEIDFVMGSNNKAEILAKAEE 114

Query: 143 ARFGKRVVDT--DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
              GK +     +Y    ++E L +     +      A + I++GC++FC++C++PY RG
Sbjct: 115 MLAGKNINSELKEYQQLKEYEDLKL----KSLSNTTRANVKIEDGCNQFCSYCIIPYARG 170

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
              SR    + +E ++L   GV EI L G ++ A  G    G K   + L+ SL+EIK L
Sbjct: 171 PVRSRKKESITEEVKRLSKQGVKEIVLTGTHLGA-YGSD-KGNKKALAQLMESLTEIKSL 228

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R ++    ++   +I    + D+  P+LHLP+QSGS++ILK+MNR +T  E+++ + 
Sbjct: 229 KRVRLSSIEGTEIDQGIINLISESDIFCPHLHLPLQSGSNQILKAMNRPYTVEEFKKTVA 288

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R   PD+AI++D IVGFPGET+  F  T+ +V +I +A+   F YS R GTP + M E
Sbjct: 289 KLRKKIPDLAITTDVIVGFPGETEKTFAETLKVVKEISFAKVHVFPYSAREGTPAAKM-E 347

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKH-GKEKGKLVGRSPWLQSVV 439
           Q++ N+  E    L+       +++    +G+  +VLIE+    +   L G +     V+
Sbjct: 348 QLNGNIVKEYSKKLRLANEALMLNYQKEFIGKTKKVLIEEVRDHKTNLLTGYTDNYLKVL 407

Query: 440 LNSKNHNIGDIIKVRITDV-KISTLYGELV 468
           ++  +     ++KV++ +      L G+++
Sbjct: 408 ISGSDALKNSLVKVKLEESIDPYHLSGKII 437


>gi|283780939|ref|YP_003371694.1| MiaB-like tRNA modifying enzyme YliG [Pirellula staleyi DSM 6068]
 gi|283439392|gb|ADB17834.1| MiaB-like tRNA modifying enzyme YliG [Pirellula staleyi DSM 6068]
          Length = 465

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 128/463 (27%), Positives = 234/463 (50%), Gaps = 18/463 (3%)

Query: 15  SQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIRE 74
           +Q          +   S GC  N+ DS RM  +    GY+ V   D AD +V+NTC   E
Sbjct: 7   AQQPPAKAAKGTYSFVSLGCPKNLVDSERMLGLLKLDGYDLVAEPDGADFVVVNTCGFIE 66

Query: 75  KAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYY 134
           +A  + +  +  +  LK    K+G    V+V+GC+A+ + E++L   P ++ +VG     
Sbjct: 67  RARTESFQAIDEMLELK----KQGRTKGVIVSGCLAERQKEQLLEDRPGIDCLVGVFGRE 122

Query: 135 RLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNR-KRGVTAFLTIQEGCDKFCTFC 193
           ++ ++ +R       ++   SV       ++ D    R      A+L I EGCD+ CTFC
Sbjct: 123 QITQVADRLLGS---LEEQRSVFQPAPIRALSDTDRLRITPRHFAYLKISEGCDRLCTFC 179

Query: 194 VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS 253
            +P  RG   ++ + +V+ EAR+L  +GV E+ ++ Q+   + G  L GE    ++LL  
Sbjct: 180 AIPKMRGKHATKPMEEVLKEARQLAADGVKELVIVAQDTT-YYGIDLYGEP-RLAELLRE 237

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
           + +++G+  +R    +P  ++D LI      + ++PY+ +P+Q  +D +L+ M+RR T  
Sbjct: 238 IEKVEGIQWIRLMYFYPMYITDELIDVIAKSEKIVPYIDMPLQHINDTMLRRMSRRVTRA 297

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
           E    I ++R   P++ + + FI GFPGET + +    + + +  + +   F YS    T
Sbjct: 298 ETELQIKKLREAIPNLTLRTTFITGFPGETQEQYEELREFLREQKFERMGVFTYSFEPDT 357

Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRS 432
           P +N+ + + E VK ER   L    +E   ++N+A + +++ V++++  + EK   +GRS
Sbjct: 358 PAANLPDHLSEEVKNERREALMAVQQELAFAWNEAQIDKVMPVILDQSVEGEKNVWIGRS 417

Query: 433 ----PWLQSVVLNSK---NHNIGDIIKVRITDVKISTLYGELV 468
               P +  +V  +      + GDI+ V+I   +   L G  V
Sbjct: 418 MADAPDVDGLVFVTGHKYRLHAGDIVDVQIVTSQQYDLVGIAV 460


>gi|289578123|ref|YP_003476750.1| MiaB-like tRNA modifying enzyme [Thermoanaerobacter italicus Ab9]
 gi|289527836|gb|ADD02188.1| MiaB-like tRNA modifying enzyme [Thermoanaerobacter italicus Ab9]
          Length = 449

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 128/446 (28%), Positives = 235/446 (52%), Gaps = 15/446 (3%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
            +     + GC++N Y++  M ++F   GYE V+  + AD+ V+NTC +  ++  K    
Sbjct: 14  KKAVAFYTLGCKVNQYETEVMAELFKKAGYEVVDFDEKADVYVINTCTVTNRSDMKSRQE 73

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           + + R       K+  + +VV  GC  Q   +++    P V++ +G +   ++ EL+E  
Sbjct: 74  IRKAR-------KKNPNAVVVAVGCYVQVSPKDVFS-LPEVDIAIGTKNKDKIVELVEEF 125

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
               + +    ++  + E        Y       A++ IQ+GC+++CT+C++PY RG   
Sbjct: 126 TQKNQKLSVVNNIMTQKEYEEFEVTAY--TERTRAYVKIQDGCNQYCTYCIIPYARGPVR 183

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR   ++++E R+  D+G  EI L G ++ ++   G D +     D++  + EI G+ R+
Sbjct: 184 SREPEKILEEVRRFADSGYKEIVLTGIHIASY---GKDLKNIGLLDIIKRIHEIDGIKRI 240

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R ++  P  +++  +K    L  +  + H+ +QSG D  LK M RR+T  EY+ +IDR+R
Sbjct: 241 RLSSIEPVFLTEEFVKEIAKLPKMCRHYHVSLQSGCDETLKRMGRRYTTKEYKSVIDRLR 300

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
               D+AI++D +VGFPGET+++F  T   V++I +++   FKYS R GT   +   QV 
Sbjct: 301 KYIKDVAITTDVMVGFPGETEEEFFETYKFVEEICFSKMHVFKYSRRKGTRAYSFPNQVA 360

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRSPWLQSVVLNS 442
            ++K +R   L +  +  +  F ++ +G+ +EVL E+  K  KG + G +    SV +  
Sbjct: 361 NHIKEDRSKKLIELSKRCEYKFMESFIGKTLEVLFEQPVKNMKGYVEGLTDNYLSVAVKG 420

Query: 443 K-NHNIGDIIKVRITDVKISTLYGEL 467
                  +I  V+I + K + L GE+
Sbjct: 421 DIKLLRNEIYPVKIKERKDNFLIGEI 446


>gi|225874941|ref|YP_002756400.1| RNA modification enzyme, MiaB-family [Acidobacterium capsulatum
           ATCC 51196]
 gi|225794112|gb|ACO34202.1| RNA modification enzyme, MiaB-family [Acidobacterium capsulatum
           ATCC 51196]
          Length = 512

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 133/495 (26%), Positives = 213/495 (43%), Gaps = 49/495 (9%)

Query: 14  VSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIR 73
           VS   D    P+  FV S GC  N+ DS  M  +    G         AD++V+NTC   
Sbjct: 10  VSAAAD-SARPRIGFV-SLGCPKNLVDSEVMMGLLDRAGGVMTQDAASADILVVNTCSFI 67

Query: 74  EKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTY 133
           + A ++    +  +   K      G    ++VAGC+ +   +EI +  P V+ VVG    
Sbjct: 68  DAAKQESVDTILEMAQHKT----TGRAQKLIVAGCLVERYRDEIQKNIPEVDAVVGTGEL 123

Query: 134 YRLPEL-----------------LERARFGKRVVDTDYSVEDKFERLS-----------I 165
            ++ E                  +  A    R        + +F+R             +
Sbjct: 124 EKVLEAAGLALPPAPAASDSPFTILSAGVAARPEGELREQQGRFDREQWDGATAALPQYL 183

Query: 166 VDGGYNR---KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGV 222
            D    R    R  +A++ I EGCD  C+FCV+P  RG   SR    VV EA+ L+  GV
Sbjct: 184 YDHTTPRLRATRSASAYIKIAEGCDHPCSFCVIPNLRGKFRSRRFESVVAEAQSLVAQGV 243

Query: 223 CEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHG 282
            EITL+GQ+     G+ L G K   + LL  L++I+GL+ LR+  ++P  ++  L+    
Sbjct: 244 REITLIGQDTT-CYGEDL-GLKDGLALLLERLAQIEGLLWLRFLYAYPNKITGKLLDTIA 301

Query: 283 DLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGE 342
             D +  YL +P+Q  S  +LKSM R   A    + I++ R+  P + + + FIVGFPGE
Sbjct: 302 KHDNICKYLDVPLQHASGAVLKSMKRGANAEILLKTIEKARARVPGLVLRTSFIVGFPGE 361

Query: 343 TDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQ 402
           T +DF      V          F YS   G+   ++  ++      +R   L K+ +   
Sbjct: 362 TAEDFATLQQFVRDAQIDWLGVFTYSDEEGSKAFDLEGKLPRRTIEQRKRALMKQQQGIS 421

Query: 403 VSFNDACVGQIIEVLIEKHGKEKGKLV-GRS----PWLQSVVL-----NSKNHNIGDIIK 452
                  VG++++VL+E   +E   L  GR+    P +  VV        ++   G   +
Sbjct: 422 RRAKQQWVGRVVDVLVEGESEETPLLWQGRTAWHAPEIDGVVYLNDFGPFESLTPGRFYR 481

Query: 453 VRITDVKISTLYGEL 467
             IT+     +   +
Sbjct: 482 CEITEAHDYDVVARV 496


>gi|194366638|ref|YP_002029248.1| ribosomal protein S12 methylthiotransferase [Stenotrophomonas
           maltophilia R551-3]
 gi|238066608|sp|B4SQX0|RIMO_STRM5 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|194349442|gb|ACF52565.1| MiaB-like tRNA modifying enzyme YliG [Stenotrophomonas maltophilia
           R551-3]
          Length = 453

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 131/457 (28%), Positives = 210/457 (45%), Gaps = 41/457 (8%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC   + DS R+     S+GY+ V S D AD++V+NTC   + A  +    +G
Sbjct: 7   KVGFVSLGCPKALVDSERILTQLRSEGYDIVPSYDSADVVVVNTCGFIDSAVTESLDAIG 66

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                         +  V+V GC+ +   E+I    P V  V GPQ Y  + E +  A  
Sbjct: 67  EA---------MNQNGKVIVTGCLGKR-PEQIREAYPNVLAVSGPQDYQSVMEAVHEALP 116

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            K          D F  L + D G        A+L I EGC+  C+FC++P  RG  +SR
Sbjct: 117 PK---------HDPFVDL-VPDYGIKLTPRHYAYLKISEGCNHKCSFCIIPSMRGKLVSR 166

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK--------CTFSDLLYSLSEI 257
            + +V+ EA +L+  GV E+ ++ Q+ +A+       EK             L   LSE+
Sbjct: 167 PVDEVLREAERLVRGGVRELLVVSQDTSAYGVDVKYAEKMWRDKAYQTRLKALCEGLSEL 226

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
              VR+ Y   +P       + A    + ++PYL +P Q  S RIL+ M R     +  +
Sbjct: 227 DAWVRMHYVYPYPHVDEVVPLMA---ENRILPYLDIPFQHASPRILRLMKRPGAVEKTLE 283

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
            +   R + PDI + S FIVGFPGET+ +F   +  +D+    +  +F YSP  G   ++
Sbjct: 284 RVQNWRRIAPDITVRSTFIVGFPGETEAEFEELLSFLDEAQLDRVGAFAYSPVEGATAND 343

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----P 433
           + + V E VK ERL    +K  +   +  +A +G + + L++    E    V RS    P
Sbjct: 344 LPDAVPEEVKQERLARFMEKQAQISAARLEAKIGTVQQCLVDAI--EGDIAVARSKADAP 401

Query: 434 WLQS-VVLNSKN---HNIGDIIKVRITDVKISTLYGE 466
            +   V + + +     +G+ + V IT+     LYG+
Sbjct: 402 EIDGLVHIQNADQVALRVGEFVDVEITESDDHDLYGD 438


>gi|158319633|ref|YP_001512140.1| MiaB-like tRNA modifying enzyme YliG [Alkaliphilus oremlandii
           OhILAs]
 gi|238065284|sp|A8MLX7|RIMO_ALKOO RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|158139832|gb|ABW18144.1| MiaB-like tRNA modifying enzyme YliG [Alkaliphilus oremlandii
           OhILAs]
          Length = 438

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 131/448 (29%), Positives = 221/448 (49%), Gaps = 24/448 (5%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
               S GC  N+  +  +  +F S  +  VN  +DA++IV+NTC   E A ++  + +  
Sbjct: 3   VGFISLGCSKNLVVTEEIIGLFKSNHFNIVNKKEDAEIIVINTCGFIESAKQEAINTILE 62

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           +  LKN++ K      ++VAGC+ Q   +E+ +  P V++ +    Y ++ + +E     
Sbjct: 63  MAKLKNNKCKY-----LIVAGCLVQRYKKELEKAIPEVDLFISISEYKQIWKEIEN---- 113

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
             ++D +   E   +  + V           A+L I EGCD  CT+C +P  +G  ISR+
Sbjct: 114 --LLDLETGKESNLDYHNRV----LTTGSNMAYLKIGEGCDNHCTYCAIPNIQGPYISRT 167

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
           +  ++ EAR L   G+ E+ ++ Q+     G  + GE      LL  L +I+ +  +R+ 
Sbjct: 168 MEDILKEARNLAKQGIKELIVIAQDTT-KYGLDIYGE-ARLPQLLEELCKIEDIEWVRFL 225

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
             +P  ++D LIK  G+ D +  Y  +P+Q  SD +LK MNR+      R II++IR   
Sbjct: 226 YVYPESITDELIKVVGENDKICNYFDIPIQHISDSVLKRMNRKSDGASVRNIIEKIRREI 285

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           PD+ I +  IVGFPGET++DF+   + V++  + +   F YS    TP + + EQ+    
Sbjct: 286 PDVIIRTTLIVGFPGETEEDFKELYEFVEETKFDKLGVFAYSKEDNTPAAKLKEQIHHAT 345

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVL-- 440
           K  RL  +     +      +  VG + +VLIE   K     +GR+    P +  VV   
Sbjct: 346 KKSRLRKIMALQEKISRESLEQKVGNVYKVLIESRTKGGNYYIGRTYMDVPDMDGVVYIV 405

Query: 441 -NSKNHNIGDIIKVRITDVKISTLYGEL 467
            N+K + +   +  RI   K   L+GEL
Sbjct: 406 NNTKENLMNTFVDCRIQRAKDYDLFGEL 433


>gi|108562696|ref|YP_627012.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Helicobacter
           pylori HPAG1]
 gi|122386728|sp|Q1CUN4|MIAB_HELPH RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|107836469|gb|ABF84338.1| conserved hypothetical ATP-binding protein [Helicobacter pylori
           HPAG1]
          Length = 437

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 143/449 (31%), Positives = 241/449 (53%), Gaps = 23/449 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + ++++ GC MN  DS  +        Y+  N    ADLI++NTC +REK   K++S +G
Sbjct: 2   KVYIETMGCAMNSRDSEHLLSELSKLDYKETNDPKIADLILINTCSVREKPERKLFSEIG 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           +   +K        +  + V GC A   G +IL+++P V+ V+G +   ++ +++ + + 
Sbjct: 62  QFAKIKK------PNAKIGVCGCTASHMGADILKKAPSVSFVLGARNVSKISQVIHKEKA 115

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            +  +D D S        +     + +K  + + L I  GCDK C +C+VP+TRG EIS 
Sbjct: 116 VEVAIDYDES--------AYAFEFFEKKAQIRSLLNISIGCDKKCAYCIVPHTRGKEISI 167

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL-DGEKCTFSDLLYSLSEIKGLVRLR 264
            +  ++ EA KL +NG  E+ LLGQNVN +  +   +  K  FSDLL  LSEI+G+ R+R
Sbjct: 168 PMDLILKEAEKLANNGTKELMLLGQNVNNYGVRFSSEHAKVDFSDLLDKLSEIQGIERIR 227

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +T+ HP  M+D  ++       +   +H+P+QSGS  +LK M R ++   +   ++R+++
Sbjct: 228 FTSPHPLHMNDGFLERFAKNPKVCKSIHMPLQSGSSAVLKMMRRGYSKEWFLNRVERLKA 287

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           + P++ IS+D IVGFP E+D DF  TM++++K+ +   +SF YSPR  T      E+V  
Sbjct: 288 LVPEVGISTDIIVGFPNESDKDFEDTMEVLEKVRFDTLYSFIYSPRPFTEAGAWKERVPL 347

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV---GRSPWLQSVVLN 441
            V   RL  LQ + +E         VG+   VL+E   +   ++V   GRS   + + + 
Sbjct: 348 EVSYSRLERLQNRHKEILEEKAKLEVGKTHVVLVENRREMDNQIVGFEGRSDTGKFIEVT 407

Query: 442 -SKNHNIGDIIKVRITDVKISTLYGELVV 469
             +  N G+++KV I         G L+ 
Sbjct: 408 CKEKRNPGELVKVEIISHS----KGRLIA 432


>gi|296188730|ref|ZP_06857117.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Clostridium
           carboxidivorans P7]
 gi|296046657|gb|EFG86104.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Clostridium
           carboxidivorans P7]
          Length = 386

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 157/382 (41%), Positives = 228/382 (59%), Gaps = 12/382 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + FF++++GCQMN  DS ++  M    GYER     D+DLI+ NTC +RE A  KVY  L
Sbjct: 13  KLFFIETWGCQMNEEDSEKLSGMLKKIGYERTEVKQDSDLIIFNTCCVRENAELKVYGNL 72

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
           G           +  DL++ + GC+ Q EG  +EI++R P V+++ G    Y+ PE L R
Sbjct: 73  GA----LKKLKDKKPDLIIAICGCMMQQEGMAKEIVKRFPFVDIIFGTHNAYKFPEYLNR 128

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            +  +  +    + ED       +D    RK  V AF+TI  GC+ FCT+C+VP+ RG E
Sbjct: 129 VKQEQNSIIEIQNKEDGIVEGLPID----RKSDVKAFVTIMYGCNNFCTYCIVPFVRGRE 184

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR    + +E + LI  G  EITLLGQNVN+  GK L+  K +F++LL  ++EI+GL R
Sbjct: 185 RSRKPEDIENEIKDLISKGYKEITLLGQNVNS-YGKDLEP-KVSFANLLRRINEIEGLER 242

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +++ T HP+D +  ++ A  + + +   +HLPVQSGS RILK MNR +T  +Y  ++ RI
Sbjct: 243 IKFMTPHPKDFTQDVLDAIAECENVCEQVHLPVQSGSSRILKKMNRHYTKEQYLDLVRRI 302

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R   PD+AI++D IVGFPGET++DF  T+ L  ++ Y  AF+F YS R GTP   M EQ+
Sbjct: 303 RETIPDVAITTDIIVGFPGETEEDFEETLSLAREVQYDSAFTFIYSRRKGTPADEMEEQI 362

Query: 383 DENVKAERLLCLQKKLREQQVS 404
            E+VK ER   L + +      
Sbjct: 363 AEDVKHERFNRLVEIINASSAK 384


>gi|182418337|ref|ZP_02949632.1| conserved hypothetical protein [Clostridium butyricum 5521]
 gi|237666343|ref|ZP_04526328.1| conserved hypothetical protein [Clostridium butyricum E4 str. BoNT
           E BL5262]
 gi|182377719|gb|EDT75263.1| conserved hypothetical protein [Clostridium butyricum 5521]
 gi|237657542|gb|EEP55097.1| conserved hypothetical protein [Clostridium butyricum E4 str. BoNT
           E BL5262]
          Length = 466

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 137/474 (28%), Positives = 243/474 (51%), Gaps = 23/474 (4%)

Query: 4   FIKLIGVAHMVSQIVDQCIVPQR-----FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNS 58
            ++  G    +    D+ +             + GC++N Y++  M + F  +GYE  + 
Sbjct: 7   IMRATGDMAKIKTTADKVVRKNTDGKQYVAFSTLGCRVNHYETEAMAEKFIREGYEITDF 66

Query: 59  MDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEIL 118
            + AD+ V+NTC +   + +K    + R R       +   + ++   GC +Q   EE+ 
Sbjct: 67  SNFADVYVVNTCSVTNMSDKKSRQIISRAR-------RINENAIIAAVGCYSQVSPEEVA 119

Query: 119 RRSPIVNVVVGPQTYYRLPELLERARFGK--RVVDTDYSVEDKFERLSIVDGGYNRKRGV 176
            +   V+VV+G +    +   + +A+  K  ++V  +     +FE L+I +     +   
Sbjct: 120 -KIEGVDVVLGTRNKGDIVYYVNKAKDEKESQIVVGEVLRNKEFEDLNIEEY----QDKT 174

Query: 177 TAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR 236
            AFL IQ+GC++FC +C++PYTRG   S+   +V+ E +KL ++G  EI L G +  A  
Sbjct: 175 RAFLKIQDGCNRFCAYCLIPYTRGAVCSKDPEKVISEIKKLAEHGFKEIILSGIHT-ASY 233

Query: 237 GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQ 296
           G  L+G+  +   +L  + ++ G+ R+R  +  P   +D +I+    +  L P  HL +Q
Sbjct: 234 GVDLEGD-VSLMTILEEIEKVDGIERVRIGSIEPCFFTDSVIEKMKSMKKLCPQFHLSLQ 292

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
           SG D  LK MNRR+TA EY + + +IR    D +I++D IVGFPGETD++F  T + +  
Sbjct: 293 SGCDATLKRMNRRYTAKEYEEAVYKIRKNLKDASITTDVIVGFPGETDEEFNLTYEYLKN 352

Query: 357 IGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEV 416
           +   +   FK+SPR GT  + M  Q+D  +K +R   L     + + +F+ + VG+ ++V
Sbjct: 353 LKLTKTHIFKFSPRKGTKAATMDNQIDGTIKEKRSKALIDLNEKNEGNFSRSLVGRDMDV 412

Query: 417 LIE-KHGKEKGKLVGRSPWLQSV-VLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           L+E +  K+ G   G +     V ++N     IG I+  RI +     + G+L+
Sbjct: 413 LVEQEVSKKPGVFEGYTRNYVKVEIVNGSEEIIGKIVPCRIEEANGDYVTGKLL 466


>gi|290968719|ref|ZP_06560257.1| ribosomal protein S12 methylthiotransferase RimO [Megasphaera
           genomosp. type_1 str. 28L]
 gi|290781372|gb|EFD93962.1| ribosomal protein S12 methylthiotransferase RimO [Megasphaera
           genomosp. type_1 str. 28L]
          Length = 443

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 130/450 (28%), Positives = 213/450 (47%), Gaps = 18/450 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC  N+ D+  M  +   +       +  AD+I++NTC   EKA  +    + 
Sbjct: 3   KIGFVSLGCSKNLIDTEVMLGILREKHMTITEDLAQADIIIVNTCTFIEKAKRESIHTIL 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           +    K      G   +++V GC++Q   EE+L+  P ++ ++G  ++ R+ E +   R 
Sbjct: 63  QAAQYKEQ----GSCKMLLVTGCLSQQYKEELLQEMPEIDALLGTGSWDRVWEAITTVRQ 118

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           GKRV   D       +               +A++ I EGC+  CTFC++P  RG   SR
Sbjct: 119 GKRVCFMDNVSHLYDQH----TRRLRTTPSYSAYVKIGEGCNNGCTFCIIPKVRGTLYSR 174

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           S+  +V+E  +L   GV EI L+ Q+  +  G  L G +     LL  L +++G+  +R 
Sbjct: 175 SMDSIVEEVTQLAHEGVKEINLIAQDTTS-YGVDLAG-RSLLPALLRRLVKVEGIAWIRL 232

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
              +P   SD L+      D + PY+ LP+Q  S  +L+ MNR+ +  + R++++++   
Sbjct: 233 FYLYPHFFSDELMNLIIQEDKICPYVDLPLQHISQSVLQRMNRKDSEADVRRLVEKLCRG 292

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
              + + S FIVGFPGET+++F    + +    +     F YS   GTP ++M  QV E 
Sbjct: 293 ERKLTLRSTFIVGFPGETEEEFNTLAEFLKTSAFDDVGVFTYSQEEGTPAASMKAQVPEA 352

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG--KLVGR----SPWLQSVV 439
           VK ER   L     +     N A  G    +L+EK   E G  + VGR    +P +  V 
Sbjct: 353 VKEERYHTLMAIQAQVSEVRNRALEGTEHVMLVEKIETENGVRQAVGRIEAQAPEVDGVT 412

Query: 440 L--NSKNHNIGDIIKVRITDVKISTLYGEL 467
              N+     GD+++VRI       L  EL
Sbjct: 413 YLENATTVMPGDMVRVRIVQGFAYDLVAEL 442


>gi|313892874|ref|ZP_07826451.1| ribosomal protein S12 methylthiotransferase RimO [Veillonella sp.
           oral taxon 158 str. F0412]
 gi|313442227|gb|EFR60642.1| ribosomal protein S12 methylthiotransferase RimO [Veillonella sp.
           oral taxon 158 str. F0412]
          Length = 448

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 120/456 (26%), Positives = 212/456 (46%), Gaps = 19/456 (4%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + ++    S GC  N+ D+  M  +    GY     + +ADLIV+NTC   EKA  +  +
Sbjct: 1   MGKKLGYVSLGCAKNLVDTEVMLGLLRDNGYTITEDLSEADLIVVNTCTFIEKAKAESIN 60

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +  +   K     +G    ++VAGC++Q   +E+ +  P ++ ++G   + ++   ++ 
Sbjct: 61  TILEVAQYKE----DGRCKGLIVAGCLSQQYQDELFQEIPEIDALIGTGAWDQIMVAVDA 116

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
              G R    +       ER+  +          +A++ I EGC+  CTFC++P  RG  
Sbjct: 117 IEHGNRSCIMENITNIYDERMPRIQ----TTPRYSAYVKIAEGCNNGCTFCIIPKVRGAF 172

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR++  +  E  +L  +GV E+ L+ Q+  +  G  L+  K   + LL  L+ ++G+  
Sbjct: 173 RSRTIESIKAEVERLAASGVKEVVLIAQDTTS-YGIDLNDGKPLLTTLLRELTTVEGIEW 231

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R    +P   SD L+    +   L  Y+ +P+Q  ++ ILK MNRR    +  +++ +I
Sbjct: 232 IRMLYLYPTFFSDELLDIIVNEPKLCKYVDIPLQHVNNDILKQMNRRDDRSDIERLLKKI 291

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+    I + +  IVGFPGETD+ F    D V +I +     F YS   GTP     +QV
Sbjct: 292 RNAPTHITLRTSIIVGFPGETDEQFEELCDFVKEIKFDNMGVFTYSQEEGTPAGAREDQV 351

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-------EKGKLVGRSPWL 435
            E +K ER   L           N    G I   ++E+  +        KG+L  ++P +
Sbjct: 352 PEEIKEERYHVLMSIQAAISEENNRDLEGTIDYAMVEEIEEGDNNTLLAKGRLKSQAPDV 411

Query: 436 QSVVLN---SKNHNIGDIIKVRITDVKISTLYGELV 468
              +      ++   GDI+KV++       +   +V
Sbjct: 412 DGNMYIEDCGEDIKPGDILKVQVEQGFAYDVVATVV 447


>gi|161833793|ref|YP_001597989.1| RNA modification protein [Candidatus Sulcia muelleri GWSS]
 gi|229891010|sp|A8Z642|MIAB_SULMW RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|152206283|gb|ABS30593.1| RNA modification enzyme, MiaB family [Candidatus Sulcia muelleri
           GWSS]
          Length = 453

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 150/461 (32%), Positives = 260/461 (56%), Gaps = 25/461 (5%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           ++ ++F++++YGCQMN+ DS  +  +  ++G+ +  ++ +A++I++NTC IR+K+ +K+ 
Sbjct: 1   MIKKKFYIENYGCQMNISDSEIVSSILNNKGFIKTENLKEANIILINTCSIRDKSEKKIL 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             + +I+ +    IK+  D+L+ + GC+A       ++   ++N+VVGP +Y  +P L+ 
Sbjct: 61  LRINQIKFI----IKKNNDILIGILGCMAYKFKN--IKEKKLINLVVGPDSYREIPNLIN 114

Query: 142 RARFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
                K   + T +S  + +  +         ++ +TAF+TI  GCD  CTFCVVP+TRG
Sbjct: 115 NFFKKKGEYISTSFSKTETYADIIP----KREEKKITAFVTIMRGCDNMCTFCVVPFTRG 170

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA--WRGKGL----------DGEKCTFS 248
            E SR    ++ E + L   G  EI LLGQNV++  W G GL          + E   FS
Sbjct: 171 REKSRDPYSIIKECKFLFKKGYKEIILLGQNVDSYLWYGGGLKKKFKIKEIKNEEIINFS 230

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
            LL  ++    L+R+R+ TS+P DMSD ++        +  ++HLPVQSGS+RIL  MNR
Sbjct: 231 KLLELVAISVPLMRIRFCTSNPNDMSDNVLNVIKKYINICKHIHLPVQSGSNRILSLMNR 290

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
           +HT  +Y  +I++I+++ P+ ++S D I GF  E ++D   T++L++ + Y  ++ F YS
Sbjct: 291 KHTCEDYILLINKIKNIIPNCSLSCDIITGFCNENENDHNETLNLMNYVKYNFSYMFIYS 350

Query: 369 PRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-G 426
            R+GT     +++ V  + K  RL  +    +      N   +G I ++LIE    +   
Sbjct: 351 HRIGTYAYKKLIDNVSLSTKKRRLTEIINLQKTHSYYRNRKYIGSIQDILIEGISTKNIN 410

Query: 427 KLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
              GR+     V+   KN+ IGD IKV+I +   +TL G++
Sbjct: 411 FFYGRNSGNDIVIFPKKNYKIGDFIKVKINNCTSATLVGDI 451


>gi|15611324|ref|NP_222975.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Helicobacter
           pylori J99]
 gi|11387382|sp|Q9ZMG6|MIAB_HELPJ RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|4154788|gb|AAD05846.1| putative [Helicobacter pylori J99]
          Length = 437

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 140/445 (31%), Positives = 240/445 (53%), Gaps = 19/445 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + ++++ GC MN  DS  +        Y+  +    ADLI++NTC +REK   K++S +G
Sbjct: 2   KVYIETMGCAMNSRDSEHLLSELSKLDYKETSDPKMADLILINTCSVREKPERKLFSEIG 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           +   +K        +  + V GC A   G +IL+++P V+ V+G +   ++ +++ + + 
Sbjct: 62  QFAKIKK------PNAKIGVCGCTASHMGADILKKAPSVSFVLGARNVSKISQVIHKEKA 115

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            +  +D D S        +     + +K  + + L I  GCDK C +C+VP+TRG EIS 
Sbjct: 116 VEVAIDYDES--------AYAFEFFEKKAQIRSLLNISIGCDKKCAYCIVPHTRGKEISI 167

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL-DGEKCTFSDLLYSLSEIKGLVRLR 264
            +  ++ EA KL +NG  E+ LLGQNVN +  +   +  K  FSDLL  LSEI+G+ R+R
Sbjct: 168 PMDLILKEAEKLANNGTKELMLLGQNVNNYGVRFSSEHAKVGFSDLLDKLSEIQGIERIR 227

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +T+ HP  M+D  ++       +   +H+P+QSGS  +LK M R ++   +   ++R+++
Sbjct: 228 FTSPHPLHMNDAFLERFAQNPKVCKSIHMPLQSGSSAVLKMMRRGYSKEWFLNRVERLKA 287

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           + P++ IS+D IVGFP E+D DF  TM++++K+ +   +SF YSPR  T      E+V  
Sbjct: 288 LVPEVGISTDIIVGFPNESDKDFEDTMEVLEKVRFDTLYSFIYSPRPFTEAGAWKERVPL 347

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV---GRSPWLQSVVLN 441
            + + RL  LQ + +E         VG+   VL+E   +  G++V   GRS   + + + 
Sbjct: 348 EISSLRLERLQNRHKEILEEKAKLEVGKTHVVLVENRREMDGQIVGFEGRSDTGKFIEVT 407

Query: 442 SKNHN-IGDIIKVRITDVKISTLYG 465
            K     G++++V I       L  
Sbjct: 408 CKEKKNPGELVRVEIISHSKGRLMA 432


>gi|313679838|ref|YP_004057577.1| tRNA-i(6)a37 thiotransferase enzyme miab [Oceanithermus profundus
           DSM 14977]
 gi|313152553|gb|ADR36404.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Oceanithermus profundus
           DSM 14977]
          Length = 446

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 152/442 (34%), Positives = 246/442 (55%), Gaps = 15/442 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R  + +YGCQMN YD+  +     S G   V+++++A+ +++NTC +R K  EKV S LG
Sbjct: 5   RVKLITYGCQMNEYDTHLVASELASIGAAFVDTVEEANFVLVNTCAVRGKPVEKVKSLLG 64

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           ++R  K    +     L+ + GC+A  E  + + R   V+V++G    +++ E L +   
Sbjct: 65  QLRKEKE---RRKEPFLIGMMGCLASLEEGQAIARKFGVDVLLGAGAIHKIAEALAQT-- 119

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                       +  E +     G      ++AF+T+  GCD  CT+CVVP TRG E+SR
Sbjct: 120 --GAFWDVGFYREIDEVVPPPPRGT-----LSAFVTLIRGCDHRCTYCVVPRTRGPEVSR 172

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
               ++ E  +L++ G+ E+TLLGQNVN+  GK  D     F+DL+  ++ + G+ RLR+
Sbjct: 173 HPDLILREVEQLLEAGIVEVTLLGQNVNS-YGKD-DPAYPDFADLIRRVAAL-GVRRLRF 229

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
            TSHP + SD +++A  +   +  Y+HLPVQ+GSDR+L+ M R +    Y + + R+R  
Sbjct: 230 VTSHPMNFSDRIVEAIAETPAVGQYVHLPVQAGSDRVLRRMAREYRRDYYLERVARLREA 289

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            PD+ +S+D IVGFPGET++DF+ T+DL D++G+  A+ F YS R GTP     E +   
Sbjct: 290 LPDLVLSTDIIVGFPGETEEDFQQTLDLYDEVGFDAAYMFIYSARPGTPSYERFEDLPRE 349

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445
           VK ERL  L +K +E  +  N A VG+ +EVL+    KE   + G       V+L +   
Sbjct: 350 VKVERLQRLIEKQKEWSLRRNQAWVGREVEVLVRGPAKEAHWVEGHDQSNHPVLLPASEA 409

Query: 446 NIGDIIKVRITDVKISTLYGEL 467
            +  + +  +       L+G++
Sbjct: 410 PVAGLYRATVEQATPHLLFGKV 431


>gi|307181219|gb|EFN68916.1| CDK5RAP1-like protein [Camponotus floridanus]
          Length = 533

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 155/478 (32%), Positives = 253/478 (52%), Gaps = 43/478 (8%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           Q+ + + YGCQMN+ D+  +  +  S GY+   S+DDAD+I+L TC IR+ A +KV++ L
Sbjct: 38  QKVYFEIYGCQMNINDADIIWSILKSHGYKHTQSVDDADIILLVTCSIRDNAEQKVWNKL 97

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             +  +   + K+   + + + GC+A+    +IL +  +V+V+ GP +Y  LP LL    
Sbjct: 98  EMLNGI--RKKKKKNSIKIGLLGCMAERLKTKILDKGKLVDVIAGPDSYKDLPRLL-AVT 154

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
             +  ++   S ++ +  ++ V      +  V A+++I  GCD  CT+C+VP+TRG E S
Sbjct: 155 DNETAINVVLSFDETYADVTPVRLD---QDSVGAYVSIMRGCDNMCTYCIVPFTRGRERS 211

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG--------------KGLDGEKC----- 245
           R ++ ++DE R+L D GV EITLLGQNVN++R                   G K      
Sbjct: 212 RPIASILDEVRQLSDQGVKEITLLGQNVNSYRDLSQSEFVVPTDMQTHLAKGFKTVYKNK 271

Query: 246 ----TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
                FSDLL  +S I   +R+R+T+ HP+D  D ++    +   +   +HLP QSG+  
Sbjct: 272 KGGLRFSDLLDKVSLINPEIRIRFTSPHPKDFPDEVLHLIAERPNICKQIHLPAQSGNSA 331

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
           +L  M R +T   Y  ++  IR++ PDI +SSDFI GF GET+++F+ T+ L+D++ Y  
Sbjct: 332 VLDRMRRGYTREAYLDLVYHIRNILPDIYLSSDFIAGFCGETEEEFQDTLSLIDEVKYNN 391

Query: 362 AFSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
           A+ + YS R  T       + V+ +VK ER+  +    R++    N   +GQ   VL+E 
Sbjct: 392 AYLYPYSMREKTTAHRRYKDDVESHVKIERMNRMIMLYRKEVEKLNKVQIGQHQLVLVEG 451

Query: 421 HGKEKGKLV-GRSPWLQSVVL------------NSKNHNIGDIIKVRITDVKISTLYG 465
             K + + + GR+     V+L             ++    GD I  RI +    TL G
Sbjct: 452 PSKRRSEYLQGRNDGNVRVILLSTVTRINRHSATTRQIQPGDYIVARIDNANSQTLRG 509


>gi|254479764|ref|ZP_05093042.1| MiaB-like tRNA modifying enzyme [Carboxydibrachium pacificum DSM
           12653]
 gi|214034296|gb|EEB75092.1| MiaB-like tRNA modifying enzyme [Carboxydibrachium pacificum DSM
           12653]
          Length = 429

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 126/437 (28%), Positives = 236/437 (54%), Gaps = 15/437 (3%)

Query: 33  GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92
           GC++N Y++  M ++F   GYE V+  + AD+ V+NTC +  ++  K    + + RN   
Sbjct: 2   GCKVNQYETEVMAELFRKAGYEIVDFDEIADVYVINTCSVTARSDMKSRQMIRKTRNK-- 59

Query: 93  SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDT 152
                  D +VV  GC  Q   +E+    P V++V+G +   ++ +L++     K+    
Sbjct: 60  -----NPDAIVVAVGCYVQVSPDEVFS-MPEVDIVIGTKDKDKIVDLVKDFEKEKKKTKL 113

Query: 153 DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVD 212
             ++  + +       GY       A++ I++GC+++CT+C++PY RG   SR    ++ 
Sbjct: 114 IENIMKQRDYEEFGITGY--TERTRAYIKIEDGCNQYCTYCIIPYARGPVRSRKPENIIK 171

Query: 213 EARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
           E +K  ++G  EI L G ++ ++   G D +     D++  + E++G+ R+R ++  P  
Sbjct: 172 EVKKYAEHGYKEIVLTGIHIASY---GRDLKNIGLLDVIKMVHEVEGIERIRISSIEPTF 228

Query: 273 MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAIS 332
           +++ ++K   +L  +  + H+ +QSG D  LK M R++TA EY+++++R+R   PD+AI+
Sbjct: 229 LTEDVVKELANLPKMCRHYHVSLQSGCDETLKRMGRKYTASEYKEVVERLRRYIPDVAIT 288

Query: 333 SDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLL 392
           +D +VGFPGET+++F  +    ++I +A+   FKYS R GT   N   QV   VK ER  
Sbjct: 289 TDIMVGFPGETEEEFEKSYKFAEEICFAKMHVFKYSRRKGTRAYNFPNQVPNKVKEERSK 348

Query: 393 CLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRSPWLQSVVLNSK-NHNIGDI 450
            L +  +  +  F +  + + +EVL E+  K+  G + G +    SV +  +  +    I
Sbjct: 349 KLLQLSKVCERKFKERFLNRTVEVLFEQKVKDLDGYVEGLTDNYLSVAVKGELENLRNRI 408

Query: 451 IKVRITDVKISTLYGEL 467
           + VR+ ++K   L GE+
Sbjct: 409 LPVRVKEIKNDLLIGEI 425


>gi|332521166|ref|ZP_08397624.1| MiaB-like tRNA modifying enzyme YliG [Lacinutrix algicola 5H-3-7-4]
 gi|332043259|gb|EGI79456.1| MiaB-like tRNA modifying enzyme YliG [Lacinutrix algicola 5H-3-7-4]
          Length = 435

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 127/460 (27%), Positives = 222/460 (48%), Gaps = 33/460 (7%)

Query: 17  IVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA 76
           +  + +   +  V + GC  NVYDS  +     + G E V+  +  +++V+NTC     A
Sbjct: 1   MRTKSLKKNKINVITLGCSKNVYDSEVLMGQLKANGKEVVHEQEG-NIVVINTCGFINNA 59

Query: 77  AEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL 136
            E+  + +      K     +G    V V GC+++    ++ +  P V+   G      L
Sbjct: 60  KEESVNTILEYMQKKE----DGDVDKVFVTGCLSERYKPDLEKEIPNVDQYFGT---TEL 112

Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
           P LL       + +  DY  E   ERL+     Y       A+L I EGCD+ C+FC +P
Sbjct: 113 PGLL-------KALGADYKHELIGERLTTTPKNY-------AYLKIAEGCDRPCSFCAIP 158

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256
             RG   S  +  +V EA KL  NGV E+ L+ Q++  + G  L  +K   ++LL +L +
Sbjct: 159 LMRGKHKSTPIEDLVTEAEKLAANGVKELILIAQDLT-YYGLDLY-KKRNLAELLENLVK 216

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           ++G+  +R   + P      ++        +  YL +P+Q  SD ILKSM R  T  +  
Sbjct: 217 VEGIEWIRLHYAFPTGFPMDVLDIMKREPKICNYLDIPLQHISDNILKSMRRGTTKEKTT 276

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
           +++   R+  P++ I +  I G+PGET+++F+   + V ++ + +   F YS    T   
Sbjct: 277 KLLKEFRAKVPEMTIRTTLIAGYPGETEENFQELKEWVREMRFERLGCFTYSHEENTHAF 336

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS---- 432
           N+ + V E VK +R+  + +   +     N A +GQ  +V+I++  KE    VGR+    
Sbjct: 337 NLEDDVPEEVKMQRVNEIMEIQSQISWELNQAKIGQEFKVVIDR--KEGNYFVGRTEFDS 394

Query: 433 PWLQS-VVLNSKN--HNIGDIIKVRITDVKISTLYGELVV 469
           P + + V++++K      G+   V+I + +   LYGE+V 
Sbjct: 395 PDVDNEVLIDAKTVYLKTGEYTTVKIIEAEDFDLYGEVVT 434


>gi|168204736|ref|ZP_02630741.1| MiaB-like tRNA modifying enzyme [Clostridium perfringens E str.
           JGS1987]
 gi|170663578|gb|EDT16261.1| MiaB-like tRNA modifying enzyme [Clostridium perfringens E str.
           JGS1987]
          Length = 434

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 153/447 (34%), Positives = 241/447 (53%), Gaps = 17/447 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    + GC++N Y+S  M + F  +GYE V+  + AD+ V+NTC +     +K    +G
Sbjct: 2   KVAFATLGCRVNTYESEAMTEKFVREGYEVVDFNEMADVYVVNTCSVTNMGDKKSRQIIG 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR- 144
           R R       ++  + ++ V GC AQ    E+      V+VV+G +    +   + +AR 
Sbjct: 62  RAR-------RQNPEAIIAVVGCYAQIAPTEVSG-IEGVDVVLGSRNKGEIVYYVNKARD 113

Query: 145 FGKRVVDTDYSVEDK-FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            GK+ V     +++K FE L I +          AFL IQ+GC++FC +C++PYTRG   
Sbjct: 114 EGKQQVKVGAVLKNKVFEDLKIEEYN----NKTRAFLKIQDGCNRFCAYCLIPYTRGSVC 169

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           S+   +V++E R L D+G  EI L G +  A  G  LD EK T  DLL  + +I G+ R+
Sbjct: 170 SKDPKKVLEEIRSLADHGFKEIILSGIHT-ASYGVDLD-EKVTLVDLLEEIEKIDGIERV 227

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R  +  P   ++ +++    L  L P+ HL +QSG D  LK MNRR+TA EY  I++ +R
Sbjct: 228 RIGSIDPTFFTEDVVRRILALKKLCPHFHLSLQSGCDATLKRMNRRYTAKEYEDIVNLLR 287

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
               D++I++D IVGFPGETD++F  T + + +I  ++   FKYSPR GT   NM  QVD
Sbjct: 288 DKIEDVSITTDVIVGFPGETDEEFEETYEFLKRIALSKTHIFKYSPRKGTRAENMENQVD 347

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVLNS 442
            N K ER   L +  R  + +F +  +G++I+VL E+  +   G   G +     V   +
Sbjct: 348 GNKKDERSKKLIELNRINEKAFAEKYIGEVIDVLFEEEVELGSGVYTGYTRNYIKVNAKA 407

Query: 443 KNHNIGDIIKVRITDVKISTLYGELVV 469
             +  G I+ V+I   +     GE+V+
Sbjct: 408 DCNVSGKILDVKINSFEGEVAKGEIVL 434


>gi|169343507|ref|ZP_02864506.1| MiaB-like tRNA modifying enzyme [Clostridium perfringens C str.
           JGS1495]
 gi|169298067|gb|EDS80157.1| MiaB-like tRNA modifying enzyme [Clostridium perfringens C str.
           JGS1495]
          Length = 434

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 153/447 (34%), Positives = 241/447 (53%), Gaps = 17/447 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    + GC++N Y+S  M + F  +GYE V+  + AD+ V+NTC +     +K    +G
Sbjct: 2   KVAFATLGCRVNTYESEAMTEKFVREGYEVVDFNEMADVYVVNTCSVTNMGDKKSRQIIG 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR- 144
           R R       ++  + ++ V GC AQ    E+      V+VV+G +    +   + +AR 
Sbjct: 62  RAR-------RQNPEAIIAVVGCYAQIAPTEVSG-IEGVDVVLGSRNKGEIVYYVNKARD 113

Query: 145 FGKRVVDTDYSVEDK-FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            GK+ V     +++K FE L I +          AFL IQ+GC++FC +C++PYTRG   
Sbjct: 114 EGKQQVKVGAVLKNKVFEDLKIEEYN----NKTRAFLKIQDGCNRFCAYCLIPYTRGSVC 169

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           S+   +V++E R L D+G  EI L G +  A  G  LD EK T  DLL  + +I G+ R+
Sbjct: 170 SKDPKKVLEEIRSLADHGFKEIILSGIHT-ASYGVDLD-EKVTLVDLLEEIEKIDGIERV 227

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R  +  P   ++ +++    L  L P+ HL +QSG D  LK MNRR+TA EY  I++ +R
Sbjct: 228 RIGSIDPTFFTEDVVRRILALKKLCPHFHLSLQSGCDATLKRMNRRYTAKEYEDIVNLLR 287

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
               D++I++D IVGFPGETD++F  T + + +I  ++   FKYSPR GT   NM  QVD
Sbjct: 288 DKIEDVSITTDVIVGFPGETDEEFEETYEFLKRIALSKTHIFKYSPRKGTRAENMENQVD 347

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVLNS 442
            N K ER   L +  R  + +F +  +G++I+VL E+  +   G   G +     V   +
Sbjct: 348 GNKKDERSKKLIELNRINEKAFAEKYIGEVIDVLFEEEVELGSGVYTGYTRNYIKVNAKA 407

Query: 443 KNHNIGDIIKVRITDVKISTLYGELVV 469
             +  G I+ V+I   +     GE+V+
Sbjct: 408 DCNVSGKILNVKINSFEGEVAKGEIVL 434


>gi|291616854|ref|YP_003519596.1| YliG [Pantoea ananatis LMG 20103]
 gi|291151884|gb|ADD76468.1| YliG [Pantoea ananatis LMG 20103]
 gi|327393280|dbj|BAK10702.1| 2-methylthioadenine synthetase YliG [Pantoea ananatis AJ13355]
          Length = 442

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 130/461 (28%), Positives = 222/461 (48%), Gaps = 34/461 (7%)

Query: 17  IVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA 76
           +     +P R    S GC  N+ DS R+     ++GYE V   DDA+++++NTC   + A
Sbjct: 1   MSTTNTLPPRVGFVSLGCPKNLVDSERILTELRTEGYEVVPRYDDAEIVIVNTCGFIDSA 60

Query: 77  AEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL 136
            ++    +G              +  V+V GC+  A+ ++I    P V  + GP +Y ++
Sbjct: 61  VQESLEAIGEA---------LNENGKVIVTGCLG-AKVDQIREVHPKVLEITGPHSYEQV 110

Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
              + R               + F  L + + G        A+L I EGC+  CTFC++P
Sbjct: 111 LSHVHRY--------VPKPQHNPFLSL-VPEQGVKLTPRHYAYLKISEGCNHRCTFCIIP 161

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA------WRGKGLDGE--KCTFS 248
             RG   SR++ +V+DEA++L++ GV E+ ++ Q+ +A       R    +G   K +  
Sbjct: 162 SMRGDLDSRAIGEVLDEAKRLVEAGVKELLVISQDTSAYGVDVKHRTGFWNGAPVKTSMV 221

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
            L   L+++   VRL Y   +P       + A G    ++PYL +P+Q  S RILK M R
Sbjct: 222 SLCEQLAKLGVWVRLHYVYPYPHVDDVIPLMAEG---KILPYLDIPLQHASPRILKLMKR 278

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
                   + I R R + P++ + S FIVGFPGET++DF+  +D + +    +   F+YS
Sbjct: 279 PGAVERTLERIKRWREICPELTLRSTFIVGFPGETEEDFQMLLDFIKEARLDRVGCFQYS 338

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--G 426
           P  G   + + + VDE VK ER     +  ++         VG+ I V+I++  +E   G
Sbjct: 339 PVEGATANQLPDPVDEAVKQERYDRFMQLQQQISAERLQEKVGREIMVIIDEVDEEGAIG 398

Query: 427 KLVGRSPWLQS-VVLNSK-NHNIGDIIKVRITDVKISTLYG 465
           + +  +P +   V LN + N   GD+++V++       L+ 
Sbjct: 399 RSMADAPEIDGAVYLNGESNVKPGDVLRVKVEHADEYDLWA 439


>gi|208434215|ref|YP_002265881.1| conserved hypothetical ATP-binding protein [Helicobacter pylori
           G27]
 gi|229890642|sp|B5ZA35|MIAB_HELPG RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|208432144|gb|ACI27015.1| conserved hypothetical ATP-binding protein [Helicobacter pylori
           G27]
          Length = 437

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 140/445 (31%), Positives = 239/445 (53%), Gaps = 19/445 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + ++++ GC MN  DS  +        Y+  +    ADLI++NTC +REK   K++S +G
Sbjct: 2   KVYIETMGCAMNSRDSEHLLSELSKLDYKETSDPKTADLILINTCSVREKPERKLFSEIG 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           +   +K        +  + V GC A   G +IL+++P V+ V+G +   ++ +++ + + 
Sbjct: 62  QFAKIKK------PNAKIGVCGCTASHMGADILKKAPSVSFVLGARNVSKISQVIHKEKA 115

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            +  +D D S        +     + +K  + + L I  GCDK C +C+VP+TRG EIS 
Sbjct: 116 VEVAIDYDES--------AYAFEFFEKKAQIRSLLNISIGCDKKCAYCIVPHTRGKEISI 167

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL-DGEKCTFSDLLYSLSEIKGLVRLR 264
            +  ++ EA KL +NG  E+ LLGQNVN +  +   +  K  FSDLL  LSEI G+ R+R
Sbjct: 168 PMDLILKEAEKLANNGTKELMLLGQNVNNYGARFSSEHAKVDFSDLLDKLSEISGIERIR 227

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +T+ HP  M+D  ++       +   +H+P+QSGS  +LK M R ++   +   ++R+++
Sbjct: 228 FTSPHPLHMNDGFLERFAKNPKVCKSIHMPLQSGSSAVLKMMRRGYSKEWFLNRVERLKA 287

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           + P++ IS+D IVGFP E+D DF  TM++++K+ +   +SF YSPR  T      E+V  
Sbjct: 288 LVPEVGISTDIIVGFPNESDKDFEDTMEVLEKVRFDTLYSFIYSPRPFTEAGAWKERVPL 347

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV---GRSPWLQSVVLN 441
            V + RL  LQ + +E         VG+   VL+E   +   ++V   GRS   + + + 
Sbjct: 348 EVSSSRLERLQNRHKEILEEKAKLEVGKTHVVLVENRREINNQIVGFEGRSDTGKFIEVA 407

Query: 442 -SKNHNIGDIIKVRITDVKISTLYG 465
             +  N G++++V I       L  
Sbjct: 408 CKEKRNPGELVEVEIISHSKGRLMA 432


>gi|182415379|ref|YP_001820445.1| MiaB-like tRNA modifying enzyme YliG [Opitutus terrae PB90-1]
 gi|238066424|sp|B1ZW93|RIMO_OPITP RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|177842593|gb|ACB76845.1| MiaB-like tRNA modifying enzyme YliG [Opitutus terrae PB90-1]
          Length = 471

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 116/455 (25%), Positives = 199/455 (43%), Gaps = 18/455 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +  + S GC  N+ DS  M       G   +   + AD++++NTC   + + E+    + 
Sbjct: 3   KVSLISLGCAKNLVDSEIMVGHLHQAGMAVIPEAEKADVVIVNTCSFIDSSKEESIGHIL 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILR-RSPIVNVVVGPQTYYRLPELLERAR 144
            +        K   +  ++VAGC++Q   +++       V+  +G     ++  +++   
Sbjct: 63  EVHQ-HRGLRKRRKEQKLIVAGCMSQRFSKDLSSSLHDEVDAFIGLDQVTKVAPIIQEIY 121

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKR---GVTAFLTIQEGCDKFCTFCVVPYTRGI 201
             +R    D     +     I D    R R      A++ I EGC+  CTFC++P  RG 
Sbjct: 122 ARERTKTDDPVSFVEGRSTFIPDYDTPRFRLTPKHFAYVKIAEGCNHPCTFCIIPQIRGR 181

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-----------GEKCTFSDL 250
             SR++  VV E R+L+  GV EI L+ Q+   +     +           G     + L
Sbjct: 182 HRSRTVESVVAEVRQLVREGVKEINLISQDTTFFGMDTWEQRPNPRTPVDSGRGTALTTL 241

Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
           L  L+ I+G   +R   +HP   SD LI+   +   +  Y+ +P+Q  SD +L  M R  
Sbjct: 242 LRQLNAIEGDFWIRLLYTHPAHWSDELIRTIAECPKVARYIDIPLQHISDAMLSRMQRET 301

Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370
           +    R +I RIR+  P IA+ + FIVGFPGETD D       + +  + +   F+YS  
Sbjct: 302 SGGYIRDLIARIRAGIPGIAVRTTFIVGFPGETDADVDELCAFISETKFERLGVFRYSQE 361

Query: 371 LGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG 430
            GT  + M EQ+    K  R        ++     +   VG+ + VL+E+ G  +G+   
Sbjct: 362 DGTRAAKMPEQLSAKTKEARWHRTMALQKQIAADVSKTYVGRTLRVLVEEPGVARGE--A 419

Query: 431 RSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYG 465
            +P +   V   +   +G+   V +T      L  
Sbjct: 420 DAPDIDGRVYVPRELPVGEFADVTVTGYHDYDLLA 454


>gi|157411395|gb|ABV54352.1| putative FeS oxidoreductase [Pseudomonas stutzeri]
          Length = 441

 Score =  373 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 127/455 (27%), Positives = 212/455 (46%), Gaps = 34/455 (7%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
               S GC     DS R+      +GY+ V S +DAD++V+NTC   + A  +    +G 
Sbjct: 8   VGFVSLGCPKATVDSERILTQLRMEGYQIVPSYEDADVVVVNTCGFIDSAKAESLDAIGE 67

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
                        +  V+V GC+   +   I    P V  V GPQ Y ++   +      
Sbjct: 68  A---------IAENGKVIVTGCMG-VDENNIRGVHPSVLAVTGPQQYEQVVNAVHE---- 113

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
              V       D F  L    G     R   A+L I EGC+  C+FC++P  RG  +SR 
Sbjct: 114 ---VVPPSIEHDPFVDLVPPQGIKLTPRHY-AYLKISEGCNHSCSFCIIPSMRGKLVSRP 169

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYSLSEIK 258
           +  V+ EA +L+  GV EI ++ Q+ +A+      +    DG+  K    +L  +L ++ 
Sbjct: 170 VGDVLSEAERLVKAGVKEILVISQDTSAYGVDLKYKLDFWDGQPVKTRMLELCEALGKMG 229

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
             VRL Y   +P       + A G    ++PYL +P Q  S ++LK+M R     +    
Sbjct: 230 VWVRLHYVYPYPNVDDVIPLMAAG---KILPYLDIPFQHASPKVLKAMKRPAFEDKTLAR 286

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           I + R + P++ I S FIVGFPGET++DF+  +D + +    +   F+YSP  G P   M
Sbjct: 287 IQKWREICPELTIRSTFIVGFPGETEEDFQYLLDWLTEAQLDRVGCFQYSPVDGAPAEAM 346

Query: 379 -LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPWL 435
            LE V + +K +R        +    +     VG+ ++VLI++  ++   G+    +P +
Sbjct: 347 GLEPVPDEIKQDRWDRFMAHQQAISAARLQLKVGREMDVLIDEVDEDGAIGRSWADAPEI 406

Query: 436 QSVVL--NSKNHNIGDIIKVRITDVKISTLYGELV 468
             +V   +++    GD ++VR+T+     L+ E++
Sbjct: 407 DGMVYVDSAQPLQPGDKVRVRVTNADEYDLWAEVI 441


>gi|257094456|ref|YP_003168097.1| MiaB-like tRNA modifying enzyme YliG [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257046980|gb|ACV36168.1| MiaB-like tRNA modifying enzyme YliG [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 441

 Score =  373 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 123/458 (26%), Positives = 201/458 (43%), Gaps = 35/458 (7%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+     S GC   + DS ++     ++GY    S + ADL+++NTC   + A E+    
Sbjct: 4   PKNVGFVSLGCPKALVDSEQILTRLRAEGYLISPSYEGADLVLVNTCGFIDAAVEESLDA 63

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G                 V+V GC+   E + I +  P V  V GP     + + +   
Sbjct: 64  IGEALAENGK---------VIVTGCLGSRE-DLIRKAHPQVLAVTGPHATDAVLQHVHAH 113

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
                         D F  L +   G        A+L I EGC+  CTFC++P  RG  +
Sbjct: 114 LP---------QPHDPFTSL-VPPQGIKLTPPHFAYLKISEGCNHSCTFCIIPSMRGPLV 163

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-----RGKGLDGEKC---TFSDLLYSLS 255
           SR +  V+ EAR L D+GV E+ ++ Q+ +A+        G  G +       +L  +L 
Sbjct: 164 SRPIGDVLQEARTLADSGVRELLVISQDTSAYGVDLKYRTGFVGGRPVRTRLRELCEALG 223

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
           ++   VRL Y   +P   +   + A G    L+PYL +P Q  S R+L +M R  +A   
Sbjct: 224 DLGIWVRLHYVYPYPSVDALVPLMAEG---RLLPYLDVPFQHASARVLAAMKRPASAENN 280

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
            + +   R + P+I I S FI GFPGET+ +F   +  + +    +   F YSP  G   
Sbjct: 281 LERVRAWRDICPEITIRSTFITGFPGETESEFEELLAFLAEARLDRVGCFAYSPVAGAAA 340

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSP 433
           + +   + + V+ ER   L     +       A +G+ I VL+++   E    +    +P
Sbjct: 341 NALPGALPDEVREERRQRLMALQEDISAELLAARIGREINVLVDEVDDEGTIARSAADAP 400

Query: 434 WLQSVVLNSK--NHNIGDIIKVRITDVKISTLYGELVV 469
            +  +V  +   +   GD ++VR+ D     LY ELV 
Sbjct: 401 EIDGLVFINDHFDAEPGDFLRVRVVDADEHDLYAELVT 438


>gi|182626906|ref|ZP_02954640.1| MiaB-like tRNA modifying enzyme [Clostridium perfringens D str.
           JGS1721]
 gi|177907756|gb|EDT70368.1| MiaB-like tRNA modifying enzyme [Clostridium perfringens D str.
           JGS1721]
          Length = 434

 Score =  373 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 153/447 (34%), Positives = 241/447 (53%), Gaps = 17/447 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    + GC++N Y+S  M + F  +GYE V+  + AD+ V+NTC +     +K    +G
Sbjct: 2   KVAFATLGCRVNTYESEAMTEKFVREGYEVVDFNEMADVYVVNTCSVTNMGDKKSRQIIG 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR- 144
           R R       ++  + ++ V GC AQ    E+      V+VV+G +    +   + +AR 
Sbjct: 62  RAR-------RQNPEAIIAVVGCYAQIAPTEVSG-IEGVDVVLGSRNKGEIVYYVNKARD 113

Query: 145 FGKRVVDTDYSVEDK-FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            GK+ V     +++K FE L I +          AFL IQ+GC++FC +C++PYTRG   
Sbjct: 114 EGKQQVKVGAVLKNKVFEDLKIEEYN----NKTRAFLKIQDGCNRFCAYCLIPYTRGSVC 169

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           S+   +V+DE R L ++G  EI L G +  A  G  LD EK T  DLL  + +I G+ R+
Sbjct: 170 SKDPKKVLDEIRSLAEHGFKEIILSGIHT-ASYGVDLD-EKVTLVDLLEEIEKIDGIERV 227

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R  +  P   ++ +++    L  L P+ HL +QSG D  LK MNRR+TA EY  I++ +R
Sbjct: 228 RIGSIDPTFFTEDVVRRILALKKLCPHFHLSLQSGCDSTLKRMNRRYTAKEYEDIVNLLR 287

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
               D++I++D IVGFPGETD++F  T + + +I  ++   FKYSPR GT   NM  QVD
Sbjct: 288 DKIEDVSITTDVIVGFPGETDEEFEETYEFLKRIALSKTHIFKYSPRKGTRAENMENQVD 347

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVLNS 442
            N K ER   L +  R  + +F +  +G++I+VL E+  +   G   G +     V   +
Sbjct: 348 GNKKDERSKKLIELNRINEKAFAEKYIGEVIDVLFEEEVELGSGVYTGYTRNYIKVNAKA 407

Query: 443 KNHNIGDIIKVRITDVKISTLYGELVV 469
             +  G I+ V+I   +     GE+V+
Sbjct: 408 DCNVSGKILNVKINSFEGEVAKGEIVL 434


>gi|255659203|ref|ZP_05404612.1| tRNA-I(6)A37 modification enzyme MiaB [Mitsuokella multacida DSM
           20544]
 gi|260848655|gb|EEX68662.1| tRNA-I(6)A37 modification enzyme MiaB [Mitsuokella multacida DSM
           20544]
          Length = 430

 Score =  373 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 140/434 (32%), Positives = 222/434 (51%), Gaps = 19/434 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +  + + GC++N +++  ME +F  +GYE V     AD+ V+NTC +      K    + 
Sbjct: 2   KVALTTLGCKVNQFETETMEGLFKQRGYEVVPFEARADVYVINTCSVTSLGDRKSRQIIR 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA-- 143
           R         +E    +V V GC AQ   +EI +    V VV+G +    + + +E+A  
Sbjct: 62  RAH-------RENPQAIVAVCGCYAQVAPDEI-KAIEGVRVVLGTKERAHIVDYVEKAMQ 113

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             G +   TD      FE + + D     +    AFL I++GC  FC++C++PY RG   
Sbjct: 114 EDGIQGTITDIMKAKTFEDIPLYDSPERTR----AFLKIEDGCQNFCSYCIIPYARGPVK 169

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR    V  EA KL+  G  EI L G ++ A  G+ L G+  T +D    +  + GL RL
Sbjct: 170 SRLPEHVHREAEKLVAMGFKEIVLTGIHLGA-YGRDLPGD-ITLADACREVLSVPGLKRL 227

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R  +    ++S  L     + +    +LHLP+Q+GSD++LK MNR +   E+ ++I+ I 
Sbjct: 228 RLGSLESIELSPELFALIREDERFCAHLHLPLQAGSDKVLKDMNRHYDTQEFARLIEHIE 287

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              P +AIS+D IVGFPGET++DF   +  V+K+ +A+   F YS R GTP +   +QVD
Sbjct: 288 EEVPGVAISTDIIVGFPGETEEDFEQGLSFVEKMNFARMHVFPYSRRTGTPAAARKDQVD 347

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
           E VK ER+  +Q     +   F+ + +G+ + VL E    + G   G +     V    +
Sbjct: 348 EAVKKERVHRMQALADRKAEEFHRSFIGREMRVLFE--TAKDGITDGLTDNYIRV-YTDE 404

Query: 444 NHNIGDIIKVRITD 457
             + G+I KV+I  
Sbjct: 405 AVDCGEIYKVQIDK 418


>gi|15603436|ref|NP_246510.1| hypothetical protein PM1571 [Pasteurella multocida subsp. multocida
           str. Pm70]
 gi|18202814|sp|Q9CKN9|RIMO_PASMU RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|12721964|gb|AAK03655.1| unknown [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 446

 Score =  373 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 131/466 (28%), Positives = 219/466 (46%), Gaps = 41/466 (8%)

Query: 21  CIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKV 80
             +P   F+ S GC  N+ DS R+     S GY  + S ++ADL+++NTC   + A ++ 
Sbjct: 3   SSLPNIGFI-SLGCPKNLVDSERILTELRSDGYNIIPSYENADLVIVNTCGFIDSAVQES 61

Query: 81  YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140
              +G                 V+V GC+  A+ + I    P V  V GP +Y  + + +
Sbjct: 62  LEAIGEALEENGK---------VIVTGCLG-AKEDRIREVHPKVLEVTGPHSYEAVMQQV 111

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
            +               + +  L +   G        A+L I EGCD  CTFC++P  RG
Sbjct: 112 HKY--------VPKPAYNPYVNL-VPKQGVKLTPKHYAYLKISEGCDHRCTFCIIPSMRG 162

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW----------RGKGLDGE--KCTFS 248
              SRS++QV+DEA++L++ GV EI ++ Q+ +A+          +    +G   K    
Sbjct: 163 DLDSRSITQVLDEAKRLVEAGVKEILVVSQDTSAYALDRSKEEQNKTVFWNGMPIKNNLI 222

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
            L   L ++   VRL Y   +P       + A G    ++PYL +P+Q  S +ILK+M R
Sbjct: 223 SLCEQLGKLGVWVRLHYVYPYPHVDQLIPLMAEG---KILPYLDIPLQHASPKILKAMKR 279

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
             +     + I + R + PD+ + S FIVGFPGE+++DF+  +D + +    +   FK+S
Sbjct: 280 PGSIERTLERIKKWREICPDLTLRSTFIVGFPGESEEDFQLLLDFLKEALLDRVGCFKFS 339

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--G 426
           P  G   + M +QV E VK  R     +  +E   +     VG++  VL+++  +E    
Sbjct: 340 PVEGAIATEMPDQVPEEVKEARFHRFMQLQQEISAARLQQKVGKVFTVLVDEVDEEGIIA 399

Query: 427 KLVGRSPWLQSVVLNSKNHNI----GDIIKVRITDVKISTLYGELV 468
           + +  +P +  VV     + +    G  I+V+IT      LY  L+
Sbjct: 400 RSIADAPEIDGVVYIDNPNRVAVKAGQFIEVKITRADAYDLYASLI 445


>gi|310659093|ref|YP_003936814.1| hypothetical protein CLOST_1789 [Clostridium sticklandii DSM 519]
 gi|308825871|emb|CBH21909.1| conserved protein of unknown function [Clostridium sticklandii]
          Length = 454

 Score =  373 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 140/445 (31%), Positives = 237/445 (53%), Gaps = 18/445 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++    + GC++N Y++  ME +F   GYE  +    AD+ V+NTC +   + +K    +
Sbjct: 23  KQVAFFTLGCKVNQYETDAMEHLFRDAGYEVTDFESFADVYVINTCTVTSMSDKKSRQMI 82

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R +       K   + ++ V GC +Q   +E++     VN+V+G     ++   +E+  
Sbjct: 83  RRAK-------KHNENAIIAVVGCYSQKSPDEVIA-IEGVNLVMGTSDRNKIVTEVEKLD 134

Query: 145 FGKRVVDT-DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
               VV+  D   +  FE LSI +     +    AFL IQEGCD+FC++C++PYTRG   
Sbjct: 135 VKDHVVEVEDIMKQRVFEALSIEETYGKTR----AFLKIQEGCDRFCSYCIIPYTRGPVR 190

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SRS++ ++ E + L  NG  E+ L G +V ++   G D       D++ +++ I G+ R+
Sbjct: 191 SRSINDIISEVKSLAKNGYKEVVLTGIHVASY---GKDLGDIRLIDVIKAINNIDGIHRI 247

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R ++  P  ++D  +    ++D   P+ HL +QSGSD +L+ MNRR+   EY+  +D+IR
Sbjct: 248 RTSSVEPLIITDDFLSELKEIDKFCPHFHLSLQSGSDSVLERMNRRYDKAEYKSAVDKIR 307

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
            + PD AI++D IVGFPGE+D +F  T   ++ I   +   FK+SPR GT  + M  QV 
Sbjct: 308 KIYPDAAITTDIIVGFPGESDAEFEETRAYLEDINLYEMHIFKFSPREGTKAAAMDNQVK 367

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
             +K  R   L +  ++ ++ F    VG+  EVL E    E G   G +     V + S 
Sbjct: 368 PEIKNHRSEVLIELAKKNKLEFEKKLVGKEAEVLFE--SSENGIYEGHTTNYVKVYVQSD 425

Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468
              IG+I +V I  ++   ++G+++
Sbjct: 426 LDLIGEIARVNIDRLENKKIFGKII 450


>gi|295103959|emb|CBL01503.1| SSU ribosomal protein S12P methylthiotransferase [Faecalibacterium
           prausnitzii SL3/3]
          Length = 441

 Score =  373 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 126/449 (28%), Positives = 210/449 (46%), Gaps = 16/449 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC  N  D   M  +  S G+E V  + +AD+I++NTC   E A  +    + 
Sbjct: 2   KIACISLGCPKNQVDLDVMVHILLSAGHETVADLAEADVILVNTCGFIESAKTEAIENIL 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                K        +L V+V GC+A+    +I    P V+ VVG  +   +  ++ER   
Sbjct: 62  EACAYKQQ----NPNLKVIVTGCLAERYRSQIEEEIPEVDAVVGCASNKAIDTIVERLFH 117

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G+  +++  + +D      +            A+L I EGC+  C +C +P  RG   SR
Sbjct: 118 GEDHLESYGAKKD----FPLGGKRVIGTPAHYAYLKIAEGCNNRCHYCAIPGIRGPLHSR 173

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            ++  V EAR L   GV E+ ++ Q+  A  G+   G+  +  +LL  L+++ GL  +R 
Sbjct: 174 DMADCVAEARWLAGEGVKELIVVAQDPTA-YGEDW-GKPGSICELLDKLNKVPGLEWIRI 231

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
             ++P  ++D  I A    + ++PYL LP+Q  +D ILK+MNRR T  E  ++I ++R  
Sbjct: 232 MYAYPERITDEFIAAMKRNEKVVPYLDLPIQHCNDTILKNMNRRSTRAELLEVIGKLRRE 291

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P I + +  I GFPGET++ F    + V ++ + +   F YS    T  + M  Q+++ 
Sbjct: 292 IPGITLRTTLIAGFPGETEEQFEDLCNFVKEVQFDRLGCFAYSAEENTVAAKMDGQIEQE 351

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG----KLVGRSPWLQSVVLN 441
           VK +R   + +             VGQ + VL +   +E G    +  G +P +   V  
Sbjct: 352 VKDKRAELVMQIQTGIMAQKQAEKVGQTVHVLCDGIDEENGLYLCRTTGDAPEVDGCVCV 411

Query: 442 SKNHN--IGDIIKVRITDVKISTLYGELV 468
           S       G    V + D  +  LYG +V
Sbjct: 412 SSEEPLYPGQFYDVLVEDSDLYDLYGTVV 440


>gi|325953666|ref|YP_004237326.1| ribosomal protein S12 methylthiotransferase rimO [Weeksella virosa
           DSM 16922]
 gi|323436284|gb|ADX66748.1| Ribosomal protein S12 methylthiotransferase rimO [Weeksella virosa
           DSM 16922]
          Length = 434

 Score =  373 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 126/459 (27%), Positives = 218/459 (47%), Gaps = 33/459 (7%)

Query: 17  IVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA 76
           +  + +  ++  + + GC  NVYDS  +     +   E V+     D++V+NTC   + A
Sbjct: 1   MRTKSVGKKKINIVTLGCSKNVYDSEVLMGQLQANKKEVVHEGVG-DIVVINTCGFIDNA 59

Query: 77  AEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL 136
            E+  + +    +LK      G    V V GC+++    ++    P V+   G +     
Sbjct: 60  KEESINTILEYVDLKEQ----GEVEKVFVTGCLSERYKPDLEAEIPNVDQYFGTRDL--- 112

Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
           P LL       + +  DY  E   ERL+     Y       A+L I EGCD+ C+FC +P
Sbjct: 113 PLLL-------KALGADYKHELVGERLTTTPRHY-------AYLKIAEGCDRPCSFCAIP 158

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256
             RG  IS+ + ++V EA+KL   G  E+ L+ Q++  + G  L  ++   +DLL  L +
Sbjct: 159 LMRGGNISKPIEELVIEAKKLAKKGTKELILIAQDLT-YYGLDLY-KRRALADLLKELVK 216

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           + G+  +R   + P    + +++       +  YL +P+Q  S  ILKSM R  T  +  
Sbjct: 217 VDGVEWIRLHYAFPSGFPEDVLEVIKKEKKVCNYLDIPLQHISTDILKSMRRGTTKEKTN 276

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
            ++D+ R   PD+AI +  IVG+PGET++ F    + V +  + +   F YS    T   
Sbjct: 277 ALLDKFRQYVPDMAIRTTLIVGYPGETEEHFNEMKEWVKEQRFDRLGCFTYSHEENTHAY 336

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQ 436
            + + V + VK +R+  + +   +     N   +G+   VLI++  KE    VGR+ +  
Sbjct: 337 LLEDDVPQEVKEQRVEEIMEIQTQISYELNQEKIGKQFRVLIDR--KEGDNFVGRTEYDS 394

Query: 437 S-----VVLNSKN--HNIGDIIKVRITDVKISTLYGELV 468
                 V++N++    +IGD ++V I D     L G+LV
Sbjct: 395 PDVDNEVLINAEEVYLSIGDFVQVEIVDAYEFDLIGKLV 433


>gi|110801313|ref|YP_696705.1| MiaB-like tRNA modifying enzyme [Clostridium perfringens ATCC
           13124]
 gi|110675960|gb|ABG84947.1| MiaB-like tRNA modifying enzyme [Clostridium perfringens ATCC
           13124]
          Length = 434

 Score =  373 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 153/447 (34%), Positives = 241/447 (53%), Gaps = 17/447 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    + GC++N Y+S  M + F  +GYE V+  + AD+ V+NTC +     +K    +G
Sbjct: 2   KVAFATLGCRVNTYESEAMTEKFVREGYEVVDFNEMADVYVVNTCSVTNMGDKKSRQIIG 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR- 144
           R R       ++  + ++ V GC AQ    E+      V+VV+G +    +   + +AR 
Sbjct: 62  RAR-------RQNPEAIIAVVGCYAQIAPTEVSG-IEGVDVVLGSRNKGEIVYYVNKARD 113

Query: 145 FGKRVVDTDYSVEDK-FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            GK+ V     +++K FE L I +          AFL IQ+GC++FC +C++PYTRG   
Sbjct: 114 EGKQQVKVGAVLKNKVFEDLKIEEYN----NKTRAFLKIQDGCNRFCAYCLIPYTRGSVC 169

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           S+   +V+DE R L ++G  EI L G +  A  G  LD EK T  DLL  + +I G+ R+
Sbjct: 170 SKDPKKVLDEIRSLAEHGFKEIILSGIHT-ASYGVDLD-EKVTLVDLLEEIEKIDGIERV 227

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R  +  P   ++ +++    L  L P+ HL +QSG D  LK MNRR+TA EY  I++ +R
Sbjct: 228 RIGSIDPTFFTEDVVRRILALKKLCPHFHLSLQSGCDATLKRMNRRYTAKEYEDIVNLLR 287

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
               D++I++D IVGFPGETD++F  T + + +I  ++   FKYSPR GT   NM  QVD
Sbjct: 288 DKIEDVSITTDVIVGFPGETDEEFEETYEFLKRIALSKTHIFKYSPRKGTRAENMENQVD 347

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVLNS 442
            N K ER   L +  R  + +F +  +G++I+VL E+  +   G   G +     V   +
Sbjct: 348 GNKKDERSKKLIELNRINEKAFAEKYIGEVIDVLFEEEVELGSGVYTGYTRNYIKVNAKA 407

Query: 443 KNHNIGDIIKVRITDVKISTLYGELVV 469
             +  G I+ V+I   +     GE+V+
Sbjct: 408 DCNVSGKILNVKINSFEGEVAKGEIVL 434


>gi|269139615|ref|YP_003296316.1| Fe-S oxidoreductase [Edwardsiella tarda EIB202]
 gi|267985276|gb|ACY85105.1| Fe-S oxidoreductase [Edwardsiella tarda EIB202]
 gi|304559491|gb|ADM42155.1| Ribosomal protein S12p Asp88 methylthiotransferase [Edwardsiella
           tarda FL6-60]
          Length = 441

 Score =  373 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 125/463 (26%), Positives = 213/463 (46%), Gaps = 35/463 (7%)

Query: 17  IVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA 76
           + +Q   P      S GC  N+ DS R+     ++GY  V + +DADL+++NTC   + A
Sbjct: 1   MSNQSRQP-TIGFVSLGCPKNLVDSERILTELRTEGYLVVPTYEDADLVIVNTCGFIDSA 59

Query: 77  AEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL 136
            ++    +G              +  V+V GC+  A+  +I    P V  + GP +Y ++
Sbjct: 60  VQESLEAIGEA---------LHENGKVIVTGCLG-AKENQIREVHPKVLEISGPHSYEQV 109

Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
              + +               + F  L + + G        A+L I EGC+  C FC++P
Sbjct: 110 LHHVHKY--------VAKPQHNPFTSL-VPEQGVKLTPKHFAYLKISEGCNHRCAFCIIP 160

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA------WRGKGLDGE--KCTFS 248
             RG   SR +  V+DEA++L D+GV E+ ++ Q+ +A       R    +G+  K +  
Sbjct: 161 SLRGDLESRPIGAVLDEAKRLADSGVRELLVISQDTSAYGADIQHRTGFWNGQPVKTSML 220

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
            L   L+ +   +RL Y   +P       + A G    L+PYL +P+Q  S RILK M R
Sbjct: 221 SLCEQLATLGIWIRLHYVYPYPHVDDVIPLMAQG---KLLPYLDIPLQHASPRILKLMKR 277

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
                   + I R R + P + + S FIVGFPGET++DF+  +D + +    +   F+YS
Sbjct: 278 PGAVERTLERIKRWREICPQLTLRSTFIVGFPGETEEDFQMLLDFLREARLDRVGCFQYS 337

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--G 426
           P      + + +QV + +K  R     +  ++         VG  + V+I++  +E   G
Sbjct: 338 PVESAAANELPDQVPDEIKQARFDRFMQLQQQISAERLQEKVGLTLPVIIDEVDEEGAIG 397

Query: 427 KLVGRSPWLQSVVLNSKN--HNIGDIIKVRITDVKISTLYGEL 467
           + +  +P +  VV  +       GDI+ V I +     ++G L
Sbjct: 398 RSMADAPEIDGVVYLNGERGVKPGDIVSVTIENADEYDMWGTL 440


>gi|160933769|ref|ZP_02081157.1| hypothetical protein CLOLEP_02630 [Clostridium leptum DSM 753]
 gi|156867646|gb|EDO61018.1| hypothetical protein CLOLEP_02630 [Clostridium leptum DSM 753]
          Length = 429

 Score =  373 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 133/445 (29%), Positives = 225/445 (50%), Gaps = 19/445 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + ++ + GC++N Y+S  M +     G+    + ++AD+++LN+C +   + +K+   L 
Sbjct: 2   KAYILTLGCKVNQYESQAMLEELCRSGFAPAETEEEADVVILNSCTVTAASDQKMRKLLH 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR-LPELLERAR 144
           R R       ++    L+V+ GC+ QA  EE   + P  ++V+G       +P +L+   
Sbjct: 62  RAR-------RKNPQALLVLTGCMPQAFPEE-AAKLPEPDLVLGTSNRKELVPSVLKALE 113

Query: 145 FGKRVVDT-DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             +R V    Y+ +D FE L I    ++ +    AFL IQ+GC++FC++C++PY+RG   
Sbjct: 114 NRRREVKIRPYTGKDSFESLQI----HSFQERTRAFLKIQDGCNRFCSYCIIPYSRGRVR 169

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           S+ L ++  EAR L  +G  EI L G N+ +  G+          D + ++  +  + R+
Sbjct: 170 SKPLEELTREARTLAASGYREIVLTGINL-SCYGQDS---GLGLWDAVEAVCGLPEVERV 225

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R  +  P  M   +++     + L P  HL +QSG D  LK MNR +TA EY  I++ IR
Sbjct: 226 RLGSLEPEQMELPVLERLARQEKLCPQFHLSLQSGCDATLKRMNRHYTAAEYESIVNNIR 285

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
            V  + ++++D +VGF GET +DF  +++   KIG+A+   F YS R GT    M  QV 
Sbjct: 286 GVFDNPSVTTDMMVGFAGETPEDFEESLNFARKIGFAKVHVFAYSRRPGTAADRMPGQVP 345

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
             VK ER   L +   E +  F    VG+   VL E   + +    G +     V + S 
Sbjct: 346 NKVKEERSRRLIEATNEARRRFLLTQVGRTEPVLFESK-RLEDYYEGYTANYTPVHVQSP 404

Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468
               G I+ V+I +      +G L+
Sbjct: 405 IPLFGKILSVKILEAGEDFCFGSLI 429


>gi|298209270|ref|YP_003717449.1| putative Fe-S oxidoreductase [Croceibacter atlanticus HTCC2559]
 gi|83849197|gb|EAP87066.1| putative Fe-S oxidoreductase [Croceibacter atlanticus HTCC2559]
          Length = 435

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 123/460 (26%), Positives = 222/460 (48%), Gaps = 33/460 (7%)

Query: 17  IVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA 76
           +  +     +  V + GC  NVYDS  +     +   + V+  ++ +++V+NTC   + A
Sbjct: 1   MRTKTRKKNKINVITLGCSKNVYDSEVLMGQLKANNKDVVH-EEEGNVVVINTCGFIDNA 59

Query: 77  AEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL 136
            E+  + +      K      G    V V GC+++    ++ +  P V+   G      L
Sbjct: 60  KEQSVNTILDAVKQKEE----GIIDKVFVTGCLSERYKPDLQKDIPEVDQYFGT---TEL 112

Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
           P LL       + +  DY  E   ER++     Y       A+L I EGCD+ C+FC +P
Sbjct: 113 PSLL-------KALGADYKHELVGERVTTTPKNY-------AYLKIAEGCDRPCSFCAIP 158

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256
             RG   S  +  +V +A+ L  NGV E+ L+ Q++  + G  L  +K   ++LL  L +
Sbjct: 159 LMRGKHRSTPIEDIVADAKSLAANGVKELILIAQDLT-YYGLDLY-KKRNLAELLRELVK 216

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           ++G+  +R   + P      ++    +   +  YL +P+Q  SD+ILKSM R  T  +  
Sbjct: 217 VEGIEWIRLHYAFPTGFPMDVLDVMNEEPKICNYLDIPLQHISDKILKSMRRGTTQEKTT 276

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
           +++   R+  P +AI +  IVG+PGET++DF+     V  + + +   F YS    T   
Sbjct: 277 KLLKEFRAKVPTMAIRTTLIVGYPGETEEDFQILKQWVKDMRFERLGCFTYSHEENTHAY 336

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS---- 432
           N+ + V E+VK +R   + +   +     N   +G+  +V+I++  KE G  VGR+    
Sbjct: 337 NLEDDVPEDVKQDRANQIMEIQGQISWELNQQHIGKEFKVVIDR--KEGGYFVGRTEFDS 394

Query: 433 PWLQS-VVLNSKNHNI--GDIIKVRITDVKISTLYGELVV 469
           P + + V+++++ H +   + + V+IT+     LY E V+
Sbjct: 395 PDVDNEVLIDAEKHYLKTAEFVTVKITEASDFDLYAEPVI 434


>gi|317010550|gb|ADU84297.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Helicobacter
           pylori SouthAfrica7]
          Length = 438

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 140/445 (31%), Positives = 237/445 (53%), Gaps = 19/445 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + ++++ GC MN  DS  +        Y   N    ADLI++NTC +REK   K++S +G
Sbjct: 2   KVYIETMGCAMNSRDSEHLLSELSKLDYRETNDPKIADLILINTCSVREKPERKLFSEIG 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           +   +K        +  + V GC A   G +IL+++P V+ V+G +   ++ +++ + + 
Sbjct: 62  QFAKIKK------PNAKIGVCGCTASHMGADILKKAPSVSFVLGARNVSKISQVIHKEKA 115

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            +  +D D S        +     + +K  V + L I  GCDK C +C+VP+TRG EIS 
Sbjct: 116 VEVAIDYDES--------AYAFEFFEKKAEVRSLLNISIGCDKKCAYCIVPHTRGKEISI 167

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE-KCTFSDLLYSLSEIKGLVRLR 264
            +  ++ EA KL  NG  E+ LLGQNVN +  +   G  K  FSDLL  LSEI G+ R+R
Sbjct: 168 PMDLILKEAEKLAHNGTKELMLLGQNVNNYGVRFSSGHAKVNFSDLLDKLSEIPGIERIR 227

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +T+ HP  M+D  ++       +   +H+P+QSGS  +LK M R ++   +   ++++++
Sbjct: 228 FTSPHPLHMNDEFLERFAKNPKVCKSIHMPLQSGSSAVLKMMRRGYSKEWFLNRVEKLKA 287

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           + P++ IS+D IVGFP E+D DF  TM++++ + +   +SF YSPR  T      E+V  
Sbjct: 288 LVPEVGISTDIIVGFPNESDKDFEDTMEVLETVRFDTLYSFIYSPRPFTEAGAWKERVPL 347

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV---GRSPWLQSVVLN 441
            V + RL  LQ + +E         +G+   VL+E   +   ++V   GRS   + + + 
Sbjct: 348 EVSSLRLERLQNRHKEILEEKAKLEMGKTHVVLVENTREMDNQIVGFEGRSDTGKFIEVT 407

Query: 442 -SKNHNIGDIIKVRITDVKISTLYG 465
             +  N+G++++V I       L  
Sbjct: 408 CKEKRNLGELVEVEIISHAKGRLMA 432


>gi|75764337|ref|ZP_00743864.1| tRNA 2-methylthioadenosine synthase homolog [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|74488177|gb|EAO51866.1| tRNA 2-methylthioadenosine synthase homolog [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
          Length = 427

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 133/428 (31%), Positives = 227/428 (53%), Gaps = 21/428 (4%)

Query: 47  MFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVA 106
           MF   GYER      AD+ V+NTC +     +K    + R        +++  D ++ V 
Sbjct: 1   MFKQGGYERTEYEKKADVYVINTCTVTNTGDKKSRQVIRRA-------VRQNPDAVICVT 53

Query: 107 GCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDK--FERLS 164
           GC AQ    EI+   P V++VVG Q   ++   +E  R  ++ ++   ++     +E L 
Sbjct: 54  GCYAQTSPAEIMA-IPGVDIVVGTQDREKMLGYIEEFRKERQPINAVRNIMKTRVYEELD 112

Query: 165 IVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCE 224
           +            A L IQEGC+ FCTFC++P+ RG+  SR   +V+ +A++L+D G  E
Sbjct: 113 VP----YFTDRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQAQQLVDAGYKE 168

Query: 225 ITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKGLVRLRYTTSHPRDMSDCLIKAHGD 283
           I L G +     G G D +    + LL  + +E+ GL RLR ++     +SD +I+    
Sbjct: 169 IVLTGIHTG---GYGEDIKDYNLAGLLRDMEAEVGGLKRLRISSIEASQISDEVIEVLDK 225

Query: 284 LDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGET 343
            +V++ +LH+P+QSGS+ +LK M R++T   +++ +DR++   P +AI+SD IVGFPGET
Sbjct: 226 SEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAITSDVIVGFPGET 285

Query: 344 DDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQV 403
           +++F  T + + +  +++   F YS R GTP + M +QV E+VK +R+  L +   +   
Sbjct: 286 EEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVKNDRVHRLIELSNQLAK 345

Query: 404 SFNDACVGQIIEVLIEK---HGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKI 460
            +  A  G+++E++ E+    G  +G  VG +     +V       IG ++KV+IT    
Sbjct: 346 EYASAFEGEVLEIIPEEQFKDGDREGLYVGYTDNYLKIVFEGSEELIGKLVKVKITKAGY 405

Query: 461 STLYGELV 468
                + V
Sbjct: 406 PYNEAQFV 413


>gi|313159539|gb|EFR58902.1| ribosomal protein S12 methylthiotransferase RimO [Alistipes sp.
           HGB5]
          Length = 432

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 120/452 (26%), Positives = 202/452 (44%), Gaps = 35/452 (7%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEKVYS 82
           ++  V + GC  N  DS  +     + GYE +   D  DA ++V+NTC     A ++   
Sbjct: 2   KKINVITLGCSKNTVDSEHLMARLAAAGYEVLFDSDRTDAKVVVINTCGFIGDAKQESID 61

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            + R    KN+    G    + V GC+++   +E+    P V+   G +T+  +   L  
Sbjct: 62  MILRAAAAKNA----GKIERLFVVGCLSERYADELRAELPEVDEFFGARTWDGIVRALGA 117

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           A                 E  ++    +       A+L I EGC+  C +C +P  RG  
Sbjct: 118 A-----------------EDPALETERHLTTPKHYAYLKISEGCNWKCGYCAIPLIRGGH 160

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +S  + ++ +EARKL   GV E+ ++ Q+   + G  L G +   ++LL  L  I G+  
Sbjct: 161 VSVPMERLEEEARKLAAGGVKELIVIAQDTT-YYGLDLYGRRM-LAELLRRLCRIGGIEW 218

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R   ++P    D +I+       +  YL +P Q  SD  L +M RRHT  +   +I R+
Sbjct: 219 IRLHYAYPTAFPDEVIEVMASEPKICKYLDIPFQHISDAQLSAMQRRHTKADAYALIGRL 278

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQ 381
           R   PD+A+ +  +VG+PGET  DF    + V  + + +   F YS   GT  +  + + 
Sbjct: 279 REAIPDLALRTTLLVGYPGETQADFAELEEFVRDVRFERLGVFAYSEEEGTYSAQKLQDN 338

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQS 437
           V E VK +R+  +     E  +  N   VG+   VLI+   ++    VGR+    P +  
Sbjct: 339 VPEEVKQQRVERIMALQNEISLENNLRRVGRTERVLID--SRQGDYYVGRTQYDSPEVDQ 396

Query: 438 -VVLNSKNHNI--GDIIKVRITDVKISTLYGE 466
            +++ +    +  G    VRI       LYG 
Sbjct: 397 EILIPASEKRLLRGRFYDVRIDSAADYDLYGR 428


>gi|146282114|ref|YP_001172267.1| putative FeS oxidoreductase [Pseudomonas stutzeri A1501]
 gi|145570319|gb|ABP79425.1| putative FeS oxidoreductase [Pseudomonas stutzeri A1501]
          Length = 460

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 126/457 (27%), Positives = 206/457 (45%), Gaps = 36/457 (7%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
                S GC     DS R+      +GY+ V S +DAD++V+NTC   + A  +    +G
Sbjct: 26  TVGFVSLGCPKATVDSERILTQLRMEGYQIVPSYEDADVVVVNTCGFIDSAKAESLDAIG 85

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                         +  V+V GC+   +   I    P V  V GPQ Y ++   +     
Sbjct: 86  EA---------IAENGKVIVTGCMG-VDENNIRGVHPSVLAVTGPQQYEQVVNAVHE--- 132

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
               V       D F  L    G     R   A+L I EGC+  C+FC++P  RG  +SR
Sbjct: 133 ----VVPPSIEHDPFVDLVPPQGIKLTPRHY-AYLKISEGCNHSCSFCIIPSMRGKLVSR 187

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE---------KCTFSDLLYSLSE 256
            +  V+ EA +L+  GV E+ ++ Q+ +A  G  L  +         K    +L   L +
Sbjct: 188 PVGDVLSEAERLVKAGVKEVLVISQDTSA-YGVDLKYKLDFWNGQPVKTRMLELCEELGK 246

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           +   VRL Y   +P       + A G    ++PYL +P Q  S ++LK+M R     +  
Sbjct: 247 MGVWVRLHYVYPYPNVDDVIPLMAAG---KILPYLDIPFQHASPKVLKAMKRPAFEDKTL 303

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
             I + R + P++ I S FIVGFPGET++DF+  +D + +    +   F+YSP  G P  
Sbjct: 304 ARIKKWREICPELTIRSTFIVGFPGETEEDFQYLLDWLTEAQLDRVGCFQYSPVDGAPAE 363

Query: 377 NM-LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSP 433
            M LE V + +K +R        +    +     VG+ ++VLI++  ++   G+    +P
Sbjct: 364 AMNLEPVPDEIKQDRWDRFMAHQQAISAARLQLKVGKELDVLIDEVDEDGAIGRSWADAP 423

Query: 434 WLQSVVLNSKN--HNIGDIIKVRITDVKISTLYGELV 468
            +  +V          GD ++VR+T+     L+ E++
Sbjct: 424 EIDGMVYVDSEQPLQPGDKVRVRVTNADEYDLWAEVI 460


>gi|160942860|ref|ZP_02090099.1| hypothetical protein FAEPRAM212_00336 [Faecalibacterium prausnitzii
           M21/2]
 gi|158445761|gb|EDP22764.1| hypothetical protein FAEPRAM212_00336 [Faecalibacterium prausnitzii
           M21/2]
          Length = 441

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 126/449 (28%), Positives = 210/449 (46%), Gaps = 16/449 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC  N  D   M  +  S G+E V  + +AD+I++NTC   E A  +    + 
Sbjct: 2   KIACISLGCPKNQVDLDVMVHILLSAGHETVADLAEADVILVNTCGFIESAKTEAIENIL 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                K        +L V+V GC+A+    +I    P V+ VVG  +   +  ++ER   
Sbjct: 62  EACAYKQQ----NPNLKVIVTGCLAERYRSQIEEEIPEVDAVVGCASNKAIDTIVERLFH 117

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G+  +++  + +D      +            A+L I EGC+  C +C +P  RG   SR
Sbjct: 118 GEDHLESYGAKKD----FPLGGKRVIGTPAHYAYLKIAEGCNNRCHYCAIPGIRGPLHSR 173

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            ++  V EAR L   GV E+ ++ Q+  A  G+   G+  +  +LL  L+++ GL  +R 
Sbjct: 174 DMADCVAEARWLAGEGVKELIVVAQDPTA-YGEDW-GKPGSICELLDKLNKVPGLEWIRI 231

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
             ++P  ++D  I A    + ++PYL LP+Q  +D ILK+MNRR T  E  ++I ++R  
Sbjct: 232 MYAYPERITDEFIAAMKRNEKVVPYLDLPIQHCNDTILKNMNRRSTRAELLEVIGKLRRE 291

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P I + +  I GFPGET++ F    + V ++ + +   F YS    T  + M  Q+++ 
Sbjct: 292 IPGITLRTTLIAGFPGETEEQFEDLCNFVKEVQFDRLGCFAYSAEENTVAARMDGQIEQE 351

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG----KLVGRSPWLQSVVLN 441
           VK +R   + +             VGQ + VL +   +E G    +  G +P +   V  
Sbjct: 352 VKDKRAELVMQIQTGIMAQKQAEKVGQTVHVLCDGIDEENGLYLCRTTGDAPEVDGCVCV 411

Query: 442 SKNHN--IGDIIKVRITDVKISTLYGELV 468
           S       G    V + D  +  LYG +V
Sbjct: 412 SSEEPLYPGQFYDVLVEDSDLYDLYGTVV 440


>gi|317501694|ref|ZP_07959885.1| MiaB family RNA modification enzyme [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|331088421|ref|ZP_08337336.1| MiaB-like tRNA modifying enzyme [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|316896945|gb|EFV19025.1| MiaB family RNA modification enzyme [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|330408188|gb|EGG87676.1| MiaB-like tRNA modifying enzyme [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 431

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 134/435 (30%), Positives = 235/435 (54%), Gaps = 15/435 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++  + + GC++N Y++  M++M    GYE V   + AD+ ++NTC +   A  K    L
Sbjct: 2   KKAALHNLGCKVNAYETEAMQEMLEQAGYEIVPFKEGADVYIINTCTVTNIADRKSRQML 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R R L         D +VV AGC  QA  +E     P +++V+G      LPELL++  
Sbjct: 62  HRARKL-------NPDAVVVAAGCYVQA--QEGKEIDPCIDIVIGNNHKKDLPELLKQYE 112

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRK-RGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             ++   T+Y++ED        +    +      A++ +Q+GC++FCT+C++PY RG   
Sbjct: 113 M-EKSGHTEYAMEDINRTKEYEELHLTKPGDHTRAYIKVQDGCNQFCTYCIIPYARGRVR 171

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR    V++E R L  NG  E+ L G ++++  G   DG++    DL+  + +++G+ R+
Sbjct: 172 SRQTKDVLEEVRDLAGNGYKEVVLTGIHLSS-YGIDFDGQRHLL-DLIKEVHKVEGIERI 229

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R  +  P  +++   K   ++  + P+ HL +QSG D  LK MNR++T+ EY      +R
Sbjct: 230 RLGSLEPGIITEEFAKELSEMPKVCPHFHLSLQSGCDATLKRMNRKYTSGEYYDRCQILR 289

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
                 A+++D IVGFPGET+++F A+   VD++ + +   FKYS R GT  + M  Q+D
Sbjct: 290 KYFDHPALTTDVIVGFPGETEEEFEASYAFVDRVDFYETHIFKYSKREGTKAAVMDGQID 349

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK--LVGRSPWLQSVVLN 441
           E +K ER   +      ++ ++ D+ +G+ +EVL E+  + +GK  + G +     + L 
Sbjct: 350 EKIKGERSARMIALGERKKKAYEDSFIGKEVEVLFEERAQIEGKAVMTGHTKEYMKIALE 409

Query: 442 SKNHNIGDIIKVRIT 456
           ++ +    I+KVRI 
Sbjct: 410 TEKNISNCIVKVRIE 424


>gi|308061622|gb|ADO03510.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Helicobacter
           pylori Cuz20]
          Length = 437

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 141/449 (31%), Positives = 241/449 (53%), Gaps = 23/449 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + ++++ GC MN  DS  +        Y+  +    ADLI++NTC +REK   K++S +G
Sbjct: 2   KVYIETMGCAMNSRDSEHLLSELSKLDYKETSDPKAADLILINTCSVREKPERKLFSEIG 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           +   +K        +  + V GC A   G +IL+++P V+ V+G +   ++ +++ + + 
Sbjct: 62  QFAKIKK------PNAKIGVCGCTASHMGADILKKAPSVSFVLGARNVSKISQVIHKEKA 115

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            +  +D D S        +     + +K  + + L I  GCDK C +C+VP+TRG EIS 
Sbjct: 116 VEVAIDYDES--------AYAFEFFEKKAQIRSLLNISIGCDKKCAYCIVPHTRGKEISI 167

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL-DGEKCTFSDLLYSLSEIKGLVRLR 264
            +  ++ EA KL  NG  E+ LLGQNVN +  +   +  K  FSDLL  LSEI+G+ R+R
Sbjct: 168 PMDLILKEAEKLASNGTKELMLLGQNVNNYGARFSSEHAKVDFSDLLDKLSEIQGIERIR 227

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +T+ HP  M+D  ++       +   +H+P+QSGS  +LK M R ++   +   ++R+++
Sbjct: 228 FTSPHPLHMNDAFLERFAKNPKVCKSIHMPLQSGSSAVLKMMRRGYSKEWFLNRVERLKA 287

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           + P++ IS+D IVGFP E+D DF  TM++++K+ +   +SF YSPR  T      E+V  
Sbjct: 288 LVPEVGISTDIIVGFPNESDKDFEDTMEVLEKVRFDTLYSFIYSPRPFTEAGAWKERVPL 347

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV---GRSPWLQSVVLN 441
            V + RL  LQ + +E         VG+   VL+E   +   ++V   GRS   + + + 
Sbjct: 348 EVSSSRLERLQNRHKEILEEKAKLEVGKAHVVLVENRREIDNQIVGFEGRSDTGKFIEVA 407

Query: 442 -SKNHNIGDIIKVRITDVKISTLYGELVV 469
             +  N G++++V I         G L+ 
Sbjct: 408 CKEKRNPGELVRVEIVSHS----KGRLIA 432


>gi|94263643|ref|ZP_01287452.1| conserved hypothetical protein [delta proteobacterium MLMS-1]
 gi|93455948|gb|EAT06103.1| conserved hypothetical protein [delta proteobacterium MLMS-1]
          Length = 452

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 132/455 (29%), Positives = 210/455 (46%), Gaps = 20/455 (4%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           +P    + S GC  N+ DS  M  +   +G   V   ++ADL+++NTC   + A E+   
Sbjct: 1   MP-TIHLTSLGCPKNLVDSEVMLGLLLERGLTVVGEPEEADLLLVNTCGFIQSAVEEGID 59

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +  +   K         + VVVAGC+ +  G E+ R  P V++ +GP+    +   L+ 
Sbjct: 60  TILGLVERKRE-----PAVKVVVAGCMVKRYGAELARELPEVDLFLGPEEVATIGRRLDS 114

Query: 143 ARFGKRVVDTD-----YSVEDKFERLSIVDGGYNR-KRGVTAFLTIQEGCDKFCTFCVVP 196
               +           Y   D    L               A+L + EGCD  C++C++P
Sbjct: 115 LLAAEPAAGPGGGSRFYEQSDLPHFLMNASLPRKLATPSHRAYLKVTEGCDNRCSYCLIP 174

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256
             RG   SR L  ++ EAR L   GV E+TL+ Q++ A  G    G      +LL +L  
Sbjct: 175 ALRGPLRSRPLPDLLLEARALAAAGVKELTLVAQDLTA-YGLDQRGAP-RLPELLKALLA 232

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
              +  LR    +P  + + L++   +   L+PY  LP Q  +D +LK+MNR +     R
Sbjct: 233 ETAIPWLRLLYLYPSRVDEGLLRLVAENPRLLPYFDLPFQHVADHLLKAMNRPYGEKLIR 292

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
           Q++ RIR + P+ AI S FIVGFPGE+++D +     +      Q   F Y P  G+P +
Sbjct: 293 QLVGRIRQLVPEAAIRSTFIVGFPGESEEDSQRLAAFLRDCRLEQVGIFTYYPEEGSPAA 352

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GR---- 431
            + +Q D+ +K  R   L     +  +  N A +G   EVL+E    E   L+ GR    
Sbjct: 353 ELPDQCDDQLKEGRRRQLMALQADISLQINRARIGTRQEVLVEGVSAETDLLLEGRLRQQ 412

Query: 432 SPWLQS-VVLNSKNHNIGDIIKVRITDVKISTLYG 465
           +P +   V +   N   GD+++VRI +     L G
Sbjct: 413 APEVDGCVYITEGNCRPGDLVQVRIDEAHPYDLVG 447


>gi|56478113|ref|YP_159702.1| ribosomal protein S12 methylthiotransferase [Aromatoleum aromaticum
           EbN1]
 gi|81357013|sp|Q5P1L3|RIMO_AROAE RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|56314156|emb|CAI08801.1| radical SAM protein similar to MiaB [Aromatoleum aromaticum EbN1]
          Length = 443

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 134/457 (29%), Positives = 208/457 (45%), Gaps = 39/457 (8%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R    S GC     DS  +     ++GY+   S DDADL+V+NTC   + A E+    +G
Sbjct: 11  RVGFVSLGCPKATVDSEHILTRLRAEGYDLSGSYDDADLVVVNTCGFIDAAVEESLDAIG 70

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                            V+V GC+  A+ + IL   P V  V GP     + + + +   
Sbjct: 71  EALAENGK---------VIVTGCLG-AKDDVILAAHPQVLAVTGPHATDAVVKAVHQHLP 120

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                       D F  L I   G        A+L I EGC+  C+FC++P  RG  +SR
Sbjct: 121 ---------KPHDPFTDL-IPPQGIRLTPAHYAYLKISEGCNHRCSFCIIPSMRGDLVSR 170

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYSLSEI 257
            +  V+ EA  L+D+GV E+ ++ Q+ +A+      R    +G   K    DL  +L E+
Sbjct: 171 PVHDVMREAESLVDSGVKELLVISQDTSAYGVDMKYRTGFWNGRPLKTRLIDLAKALGEL 230

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
              VR+ Y   +P       + A G    ++PYL +P Q  S RILK+M R        +
Sbjct: 231 GVWVRMHYVYPYPSVDELIPLMAEG---KILPYLDVPFQHASPRILKAMKRPGNVENVLE 287

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
            I + RS+ PD+ I S FI GFPGETD+DF   +  +++    +  +F YSP  G   + 
Sbjct: 288 RIRKWRSICPDLTIRSTFITGFPGETDEDFEQLLRFLEEAQLDRVGAFAYSPVEGAAANL 347

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----P 433
           + + V + V+ ER + L     +      +  +G+ I VL+E+   E    V RS    P
Sbjct: 348 LADPVPDEVREERRMRLMDFQEDISTQRLERWIGRDITVLVEEVDDEGA--VARSGSDAP 405

Query: 434 WLQSVVL--NSKNHNIGDIIKVRITDVKISTLYGELV 468
            +  +V+  +      G+  KVR+TD  +  LY   +
Sbjct: 406 EVDGLVIIPDGDGLVPGEFAKVRVTDCDVHDLYARPL 442


>gi|261368034|ref|ZP_05980917.1| RNA modification enzyme, MiaB family [Subdoligranulum variabile DSM
           15176]
 gi|282570022|gb|EFB75557.1| RNA modification enzyme, MiaB family [Subdoligranulum variabile DSM
           15176]
          Length = 446

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 127/446 (28%), Positives = 198/446 (44%), Gaps = 17/446 (3%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
             + S GC  N  D+         +G+  V    +AD+I++NTC   E A  +    +  
Sbjct: 3   IAIISLGCPKNQVDADVFCHALLKEGHTTVADPAEADVIIVNTCGFIESAKAEAIENILM 62

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA-RF 145
               K        DL V+V GC+A+   ++I++  P V+ V+G  +   +P ++ R    
Sbjct: 63  ACQYKQQ----NPDLKVIVTGCLAERYKQQIVQEIPEVDAVIGIGSNAAIPAIVARVCAA 118

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G   V++     D    + +            A+L I EGC+  C +C +P  RG   SR
Sbjct: 119 GAGQVESYGPKSD----MPLGGARVISTPRHYAYLKIAEGCNNRCHYCAIPLIRGPLRSR 174

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            +   V EAR L   GV E+ L+ Q+  A  G+   G+     +LL  L +I G+  +R 
Sbjct: 175 PIEDCVAEARWLAGEGVRELILVAQDPTA-YGEDW-GKPGAVCELLDRLQQIDGIRWIRI 232

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
             ++P  +SD  I A      ++PYL LP+Q   D +LK+MNRR    +    I R+R+ 
Sbjct: 233 LYAYPERISDAFIAAMVRNTKVVPYLDLPIQHCDDAVLKAMNRRGGRADIEDAIARLRAA 292

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P I + +  I GFPGET++ +    D V  + + +   F YS    T  + M  Q+DE 
Sbjct: 293 IPGITLRTTLIAGFPGETEEQYAELCDFVKTMRFDRLGCFAYSAEENTVAAKMDGQLDEE 352

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVLN 441
            K  R   + +   E         VGQ +E + +    E G  + RS    P +   VL 
Sbjct: 353 TKQRRADHIMELQAEVSADREKEKVGQTLECICDGVDDETGMYLLRSKADCPEIDGNVLT 412

Query: 442 SKNHNI--GDIIKVRITDVKISTLYG 465
             +  +  G    V ITD     LYG
Sbjct: 413 PADTLLETGAFYNVTITDADTYDLYG 438


>gi|256422109|ref|YP_003122762.1| MiaB-like tRNA modifying enzyme YliG [Chitinophaga pinensis DSM
           2588]
 gi|256037017|gb|ACU60561.1| MiaB-like tRNA modifying enzyme YliG [Chitinophaga pinensis DSM
           2588]
          Length = 435

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 130/461 (28%), Positives = 218/461 (47%), Gaps = 35/461 (7%)

Query: 17  IVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDAD--LIVLNTCHIRE 74
           +  + +   +  + + GC  N+ DS  +     +   + V+     D  ++V+NTC   +
Sbjct: 1   MKTKTLKKDKVNIITLGCSKNMVDSEVLSGQLLANEIDVVHESAKKDHNIVVVNTCGFID 60

Query: 75  KAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYY 134
           KA E+  + +     LKN     G    V V GC+++    ++    P V+   G     
Sbjct: 61  KAKEESINTILEQIELKNR----GRLEKVYVTGCLSERYRGDLESEIPGVDAWFGTMEL- 115

Query: 135 RLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCV 194
             P +L++        D DY  E   ERL      Y       A+L I EGC++ C+FC 
Sbjct: 116 --PLILKK-------FDADYKAELIGERLLATPTHY-------AYLKIAEGCNRTCSFCA 159

Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL 254
           +P  RG  +SR + Q+V EA KL+++GV EI L+ Q +  + G  L  E+   +DLL +L
Sbjct: 160 IPLMRGGHVSRPIEQLVAEAEKLVNSGVKEIMLIAQELT-YYGLDLYKER-RLADLLRAL 217

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
           +++KGL  +R   ++P      ++    +   +  Y+ +P+Q  +D +LKSM R+ T  E
Sbjct: 218 AQVKGLEWIRLHYAYPHKFPMEVLDVMNEFPNICKYIDMPLQHAADNMLKSMKRQITRVE 277

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
              +I  IR+  P I + +  I G+PGET +D   T   ++K+   +   F YS   GT 
Sbjct: 278 MEDLITAIRAKVPGICLRTTLITGYPGETLEDVEETKRFLEKMRLDRVGVFTYSHEEGTS 337

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPW 434
              + + +    K  R   + +  +E  +  N   VGQ+  V+++K  KE G+ + R+  
Sbjct: 338 AYELEDNIPAEEKERRAQDIMETQQEISLEKNQEKVGQVFRVIVDK--KESGRYLART-E 394

Query: 435 LQSVVLN-------SKNHNIGDIIKVRITDVKISTLYGELV 468
             SV ++       SK    G+ + VRIT      L GELV
Sbjct: 395 FDSVEVDNEVIINTSKRLKPGEFVNVRITKAYDYDLEGELV 435


>gi|317401271|gb|EFV81912.1| hypothetical protein HMPREF0005_01131 [Achromobacter xylosoxidans
           C54]
          Length = 438

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 128/459 (27%), Positives = 210/459 (45%), Gaps = 33/459 (7%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           +   +    S GC   + DS R+     ++GY+     +DAD++V+NTC   + A  +  
Sbjct: 1   MSSPKVGFVSLGCPKALVDSERILTQLRTEGYQVTPEYNDADVVVVNTCGFIDSAKAESL 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             +G                 V+V GC+   E   I    P V  V GPQ Y  +   + 
Sbjct: 61  EAIGEALAENGK---------VIVTGCMGVEE-SVIRNVHPSVLAVTGPQQYEEVVRAVH 110

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
            A   K+  +    +        +   G        A+L I EGC+  C+FC++P  RG 
Sbjct: 111 DAAPPKKDHNPYLDL--------VPPQGVKLTPRHYAYLKISEGCNHRCSFCIIPSMRGD 162

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYS 253
            +SR +  V+ EA +L+  GV E+ ++ Q+ +A+      R    +G   +   ++L  +
Sbjct: 163 LVSRPVGDVLSEAERLVKAGVKELLVISQDTSAYGVDVKYRSGFWNGRPVRTRMTELCTA 222

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
           LSE+    RL Y   +P       + A G    ++PYL +P Q  S RILK+M R     
Sbjct: 223 LSEMGVWTRLHYVYPYPHVDEVIPLMAEG---KILPYLDIPFQHASPRILKAMKRPAFED 279

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
           +    I + R   PD+ I S FIVGFPGET++DF+  +D + +    +   F+YSP  G 
Sbjct: 280 KTLARIKQWRETCPDLTIRSTFIVGFPGETEEDFQYLLDWMQEAQLDRVGCFQYSPVEGA 339

Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGR 431
           P + +   V + VK ER     +  +    +     VG+ IEVLI++   +   G+  G 
Sbjct: 340 PANLLDNPVPDEVKQERWERFMEMQQSISTARLARKVGREIEVLIDEVDDDGAVGRSAGD 399

Query: 432 SPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468
           +P +   V  S +  +  GD+++ R+TD     L+ + V
Sbjct: 400 APEIDGCVYVSSDRKLKAGDLVRARVTDSDEYDLWADTV 438


>gi|308270514|emb|CBX27126.1| Ribosomal protein S12 methylthiotransferase rimO [uncultured
           Desulfobacterium sp.]
          Length = 446

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 120/447 (26%), Positives = 209/447 (46%), Gaps = 15/447 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +  +++S GC  N+ DS  M       G+  V+    A  I++NTC   E A  +    +
Sbjct: 10  KNIYLESLGCARNLVDSELMLGRLADAGFNIVSDPAKARTILINTCSFIEAAISESVDTI 69

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             +   K    + G    ++V GC+ +   E+I++  P V+  +G   Y ++ + +E   
Sbjct: 70  LELAKYK----RNGKCRRIIVTGCLPERFREKIIKTLPEVDFFLGTGAYSKILQAVE--- 122

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G  +       +     LS       R     A+L I EGC + CT+C++P  RG + S
Sbjct: 123 -GIPIASGILLPDPGLTTLSYNAETRIRTDPNIAYLKISEGCSRRCTYCIIPKLRGKQRS 181

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R +  VV EA+ LI++GV E+ L+ Q+  ++ GK + G   + + L+  +S +   + +R
Sbjct: 182 REIEDVVLEAKSLIESGVKELILVAQDT-SYYGKDM-GSSVSLAKLIERISGLSDDIWIR 239

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
               HP  +    IKA      + PY  +P+Q  + +ILK M R +   +  ++ D+IRS
Sbjct: 240 ILYGHPESIETDAIKAIACTHNVCPYFDIPIQHVNSKILKRMGRNYNQTKLLKLFDKIRS 299

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
              D  + +  I GFPGETD DF   +  ++ + +    +F YS        N+ E+V +
Sbjct: 300 YDSDAVLRTTVITGFPGETDKDFAELLSFIETVKFDHLGTFIYSDSKDIASHNLSEKVRK 359

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVL 440
           NV  +R   +     E     N   +G++ +VL+E   +EK   +GR+    P +  +  
Sbjct: 360 NVAKKRYDRIMSSQMEISYHKNRRHIGKVFDVLVEGFPEEK-LYIGRTKYQAPDVDGITY 418

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGEL 467
            S     G +++ +ITD     L GE 
Sbjct: 419 ISGELKTGSLVRTKITDALEYDLIGEP 445


>gi|83589452|ref|YP_429461.1| MiaB-like tRNA modifying enzyme [Moorella thermoacetica ATCC 39073]
 gi|83572366|gb|ABC18918.1| MiaB-like tRNA modifying enzyme [Moorella thermoacetica ATCC 39073]
          Length = 450

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 148/445 (33%), Positives = 229/445 (51%), Gaps = 18/445 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R  + S GC++N  +   ++ +F   GY+ V   ++AD+ V++TC +   +  K    + 
Sbjct: 5   RVALVSLGCKVNQNEVEALKHLFQEAGYQVVPFPEEADVYVVHTCTVTHISDRKSRQLIR 64

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R        I+   + +V V GC AQ    E+L   P V++VVG +  +RL EL+ RAR 
Sbjct: 65  RA-------IRANPEAVVAVTGCYAQVAPGEVLA-IPGVDLVVGTRDRHRLVELVARARE 116

Query: 146 GKRVVDTDYSVE--DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           G   ++     E  + FE L +V+    R     AFL IQEGC +FCT+C+VPY RG   
Sbjct: 117 GTAPINAVRPHEKGETFEELPLVEVSRAR-----AFLKIQEGCQEFCTYCIVPYARGPLR 171

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR    +  E R+L+D G  EI L G +  A  G+ L G+    + LL +L ++ GL RL
Sbjct: 172 SRDPELIRAEVRRLVDAGYLEIVLTGVHTGA-YGRDLAGD-IDLAGLLKNLVQVPGLRRL 229

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R ++  P D +  L        ++ P+ H+P+QSG D IL  M RR+T   Y ++I  +R
Sbjct: 230 RISSIDPLDFTPELKAVLTGEGIICPHFHIPLQSGDDAILGRMGRRYTGQYYLELIASLR 289

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           S RP  A +SD +VGFPGET+  F+ T+ +V +   A    F YSPR GTP + M  QV 
Sbjct: 290 SGRPGAAFTSDVMVGFPGETEAQFQNTLAVVKEASLAGIHVFPYSPRRGTPAAAMPGQVA 349

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRSPWLQSVVLNS 442
             VK +R   L +  R     +    + Q ++VL+E           G +     V   +
Sbjct: 350 AEVKKDRERRLLQLGRRLSRQYAREFLTQTLDVLVEGPLPGCPDCQEGLTGNYLRVAFPA 409

Query: 443 KNHNIGDIIKVRITDVKISTLYGEL 467
                G ++ VR+ +++ S ++G+L
Sbjct: 410 PADLTGQLVPVRLQELRGSLIWGKL 434


>gi|168215652|ref|ZP_02641277.1| MiaB-like tRNA modifying enzyme [Clostridium perfringens NCTC 8239]
 gi|182382416|gb|EDT79895.1| MiaB-like tRNA modifying enzyme [Clostridium perfringens NCTC 8239]
          Length = 434

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 153/447 (34%), Positives = 242/447 (54%), Gaps = 17/447 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    + GC++N Y+S  M + F  +GYE V+  + AD+ V+NTC +     +K    +G
Sbjct: 2   KVAFATLGCRVNTYESEAMTEKFVREGYEVVDFNEMADVYVVNTCSVTNMGDKKSRQIIG 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR- 144
           R R       ++  + ++ V GC AQ    E+      V+VV+G +    +   + +AR 
Sbjct: 62  RAR-------RQNPEAIIAVVGCYAQIAPTEVSG-IEGVDVVLGSRNKGEIVYYVNKARD 113

Query: 145 FGKRVVDTDYSVEDK-FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            GK+ V     +++K FE L I +          AFL IQ+GC++FC +C++PYTRG   
Sbjct: 114 EGKQQVKVGAVLKNKVFEDLKIEEYN----NKTRAFLKIQDGCNRFCAYCLIPYTRGSVC 169

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           S+   +V+DE R L ++G  EI L G +  A  G  LD EK T  DLL  + +I G+ R+
Sbjct: 170 SKDPKKVLDEIRSLAEHGFKEIILSGIHT-ASYGVDLD-EKVTLVDLLEEIEKIDGIERV 227

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R  +  P   ++ +++    L  L P+ HL +QSG D  LK MNRR+TA EY  I++ +R
Sbjct: 228 RIGSIDPTFFTEDVVRRILALKKLCPHFHLSLQSGCDATLKRMNRRYTAKEYEDIVNLLR 287

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
               D++I++D IVGFPGETD++F+ T + + +I  ++   FKYSPR GT   NM  QVD
Sbjct: 288 DKIEDVSITTDVIVGFPGETDEEFKETYEFLKRIALSKTHIFKYSPRKGTRAENMENQVD 347

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVLNS 442
            N K ER   L +  R  + +F +  +G++I+VL E+  +   G   G +     V   +
Sbjct: 348 GNKKDERSKKLIELNRINEKAFAEKYIGEVIDVLFEEEVELGSGVYTGYTRNYIKVNAKA 407

Query: 443 KNHNIGDIIKVRITDVKISTLYGELVV 469
             +  G I+ V+I   +     GE+V+
Sbjct: 408 DCNVSGKILNVKINSFEGEVAKGEIVL 434


>gi|18311007|ref|NP_562941.1| MiaB-like tRNA modifying protein [Clostridium perfringens str. 13]
 gi|168208727|ref|ZP_02634352.1| MiaB-like tRNA modifying enzyme [Clostridium perfringens B str.
           ATCC 3626]
 gi|168212938|ref|ZP_02638563.1| MiaB-like tRNA modifying enzyme [Clostridium perfringens CPE str.
           F4969]
 gi|18145689|dbj|BAB81731.1| conserved hypothetical protein [Clostridium perfringens str. 13]
 gi|170713061|gb|EDT25243.1| MiaB-like tRNA modifying enzyme [Clostridium perfringens B str.
           ATCC 3626]
 gi|170715635|gb|EDT27817.1| MiaB-like tRNA modifying enzyme [Clostridium perfringens CPE str.
           F4969]
          Length = 434

 Score =  372 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 153/447 (34%), Positives = 241/447 (53%), Gaps = 17/447 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    + GC++N Y+S  M + F  +GYE V+  + AD+ V+NTC +     +K    +G
Sbjct: 2   KVAFATLGCRVNTYESEAMTEKFVREGYEVVDFNEMADVYVVNTCSVTNMGDKKSRQIIG 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR- 144
           R R       ++  + ++ V GC AQ    E+      V+VV+G +    +   + +AR 
Sbjct: 62  RAR-------RQNPEAIIAVVGCYAQIAPTEVSG-IEGVDVVLGSRNKGEIVYYVNKARD 113

Query: 145 FGKRVVDTDYSVEDK-FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            GK+ V     +++K FE L I +          AFL IQ+GC++FC +C++PYTRG   
Sbjct: 114 EGKQQVKVGAVLKNKVFEDLKIEEYN----NKTRAFLKIQDGCNRFCAYCLIPYTRGSVC 169

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           S+   +V+DE R L ++G  EI L G +  A  G  LD EK T  DLL  + +I G+ R+
Sbjct: 170 SKDPKKVLDEIRSLAEHGFKEIILSGIHT-ASYGVDLD-EKVTLVDLLEEIEKIDGIERV 227

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R  +  P   ++ +++    L  L P+ HL +QSG D  LK MNRR+TA EY  I++ +R
Sbjct: 228 RIGSIDPTFFTEDVVRRILALKKLCPHFHLSLQSGCDATLKRMNRRYTAKEYEDIVNLLR 287

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
               D++I++D IVGFPGETD++F  T + + +I  ++   FKYSPR GT   NM  QVD
Sbjct: 288 DKIEDVSITTDVIVGFPGETDEEFEETYEFLKRIALSKTHIFKYSPRKGTRAENMENQVD 347

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVLNS 442
            N K ER   L +  R  + +F +  +G++I+VL E+  +   G   G +     V   +
Sbjct: 348 GNKKDERSKKLIELNRINEKAFAEKYIGEVIDVLFEEEVELGSGVYTGYTRNYIKVNAKA 407

Query: 443 KNHNIGDIIKVRITDVKISTLYGELVV 469
             +  G I+ V+I   +     GE+V+
Sbjct: 408 DCNVSGKILNVKINSFEGEVAEGEIVL 434


>gi|325103015|ref|YP_004272669.1| SSU ribosomal protein S12P methylthiotransferase [Pedobacter
           saltans DSM 12145]
 gi|324971863|gb|ADY50847.1| SSU ribosomal protein S12P methylthiotransferase [Pedobacter
           saltans DSM 12145]
          Length = 444

 Score =  372 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 118/453 (26%), Positives = 210/453 (46%), Gaps = 35/453 (7%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD---DADLIVLNTCHIREKAAEKVYS 82
           R  V + GC  N YDS  +         + V+  +   + D++V+NTC   + A ++   
Sbjct: 16  RVNVVTLGCSKNTYDSEILMGQLKGNHIDVVHEANNVRENDIVVINTCGFIDNAKQESID 75

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            + +  +LK+     G    V+V GC++Q    E+      V+   G      L      
Sbjct: 76  TILQYSDLKDQ----GKVGKVIVTGCLSQRYTPELSAEIQNVDAWFGTNDLQNLL----- 126

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
                  V  +Y  E   ERL      +       A+  I EGC++ C+FC +P  RG  
Sbjct: 127 -----HAVGANYKYELLGERLLTTPSHF-------AYFKIAEGCNRPCSFCAIPLMRGKH 174

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +S  + ++V  A+ L  NG  E+ L+ Q++  + G  L  E+   +DLL +LS++ G+  
Sbjct: 175 VSFPIEELVKNAKNLAKNGTKELVLIAQDLT-YYGLDLYNERK-LADLLRNLSDVDGIEW 232

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R   ++P      ++    + D +  YL +P+Q  SD +LKSM R  T  +   ++++I
Sbjct: 233 IRLQYAYPSGFPMEILDVMNERDNICKYLDMPLQHISDNMLKSMRRGTTKQKTIDLVNQI 292

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R   P+IA+ +  I G+PGET+ DF    + V++  + +   F YS    T   ++ + +
Sbjct: 293 RDKVPNIAMRTTLICGYPGETERDFEEMKEWVEETRFDRLGCFTYSHEEKTQAFDLEDNI 352

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSV 438
            + VK +R+  +    +      N   VG   +VLI+K  KE    +GR+    P + + 
Sbjct: 353 PQEVKEQRVEEIMDIQQGISFDLNQEKVGNTYKVLIDK--KEGDYFIGRTEFDSPEVDNE 410

Query: 439 VL---NSKNHNIGDIIKVRITDVKISTLYGELV 468
           VL   ++    +G  + ++I   +   LYG +V
Sbjct: 411 VLLNASTDYATVGSFVNIKIDRAEDFDLYGRIV 443


>gi|153213858|ref|ZP_01949064.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Vibrio cholerae 1587]
 gi|124115692|gb|EAY34512.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Vibrio cholerae 1587]
          Length = 375

 Score =  372 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 155/346 (44%), Positives = 223/346 (64%), Gaps = 7/346 (2%)

Query: 125 NVVVGPQTYYRLPELLERARFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQ 183
           +V+ GPQT +RLPE++++++     V+D  +   +KF+RL        R  G TAF++I 
Sbjct: 1   DVIFGPQTLHRLPEMIKQSQTSDAPVMDISFPEIEKFDRLP-----EPRAEGPTAFVSIM 55

Query: 184 EGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
           EGC K+CT+CVVPYTRG E+SR +  V+ E  +L + GV E+ LLGQNVNA+RG   DG 
Sbjct: 56  EGCSKYCTYCVVPYTRGEEVSRPMDDVLFEIAQLAEQGVREVNLLGQNVNAYRGATHDGG 115

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
            C+F++LL  ++ I G+ R+R+TTSHP + +D +I  + D   L+ +LHLPVQSGSDRIL
Sbjct: 116 ICSFAELLRLVATIDGIDRIRFTTSHPLEFTDDIIAVYEDTPELVSFLHLPVQSGSDRIL 175

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
             M R HTA EY+ II ++R  RPDI ISSDFIVGFPGETD DF+ TM L+  + +  +F
Sbjct: 176 TMMKRPHTAIEYKSIIRKLRKARPDIQISSDFIVGFPGETDKDFQDTMKLIRDVDFDMSF 235

Query: 364 SFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK 423
           SF +SPR GTP ++    + E VK ERL  LQ+++  Q + ++   +G    +L+E   K
Sbjct: 236 SFIFSPRPGTPAADYPCDLSEEVKKERLYELQQQINSQAMRYSRLMLGTEQRILVEGPSK 295

Query: 424 EK-GKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           +   +L GR+   + V        IG  + V+I DV  ++L GEL+
Sbjct: 296 KDLMELRGRTENNRVVNFEGSPDLIGQFVDVKIVDVFPNSLRGELL 341


>gi|120555643|ref|YP_959994.1| MiaB-like tRNA modifying enzyme YliG [Marinobacter aquaeolei VT8]
 gi|238066389|sp|A1U488|RIMO_MARAV RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|120325492|gb|ABM19807.1| SSU ribosomal protein S12P methylthiotransferase [Marinobacter
           aquaeolei VT8]
          Length = 455

 Score =  372 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 133/471 (28%), Positives = 216/471 (45%), Gaps = 36/471 (7%)

Query: 11  AHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC 70
           A M  +  +     +  F+ S GC   + DS R+       GY+ V + DDAD++V+NTC
Sbjct: 8   AFMTEKTQNAPQSGKVGFI-SLGCPKALVDSERILTQLRLDGYDVVPTYDDADIVVVNTC 66

Query: 71  HIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGP 130
              + A ++    +G              +  V+V GC+   E + I    P V  V GP
Sbjct: 67  GFIDAAKQESLDAIGEA---------ISENGKVIVTGCMG-VEADRIRETHPGVLAVSGP 116

Query: 131 QTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190
             Y  +   + +    ++         D F  L +   G        A+L I EGC+  C
Sbjct: 117 HAYEEVVGAVHQYVPPRK-------EHDPFLDL-VPPQGVKLTPRHYAYLKISEGCNHRC 168

Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE------- 243
           TFC++P  RG  +SR +  V+DEA++L+D GV EI ++ Q+ +A  G  +          
Sbjct: 169 TFCIIPSMRGDLVSRPIGDVMDEAKRLVDAGVKEILVISQDTSA-YGVDIKYRTGFWQGR 227

Query: 244 --KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
             K     L  +L E+   VRL Y   +P       + A G    ++PYL +P Q  S R
Sbjct: 228 PVKTKMQALCEALGEMGVWVRLHYVYPYPHVDDIIPLMAEG---KILPYLDIPFQHASPR 284

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
           +LK+M R     +  + I + R + P++ I S FIVGFPGET++DF+  +D +D+    +
Sbjct: 285 VLKAMKRPAHDSKTLERIRKWREICPELTIRSTFIVGFPGETEEDFQYLLDWLDEAQLDR 344

Query: 362 AFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKH 421
             +F YS   G P + +   V E VK +RL     K  E   +   A +G+ I+VLI++ 
Sbjct: 345 VGAFTYSAVEGAPANELEGAVPEEVKEKRLARFMAKQAEISAARLQAKIGRTIDVLIDEV 404

Query: 422 GKEK--GKLVGRSPWLQSVVL--NSKNHNIGDIIKVRITDVKISTLYGELV 468
            +E   G+    +P +  +V   +      G I++  +       L+  L+
Sbjct: 405 DEEGAIGRSKADAPEIDGMVYLNDETELVPGQIVQAVVEHADEHDLWARLI 455


>gi|71902415|ref|ZP_00684371.1| Protein of unknown function UPF0004:tRNA-i(6)A37 modification
           enzyme MiaB [Xylella fastidiosa Ann-1]
 gi|71727853|gb|EAO30094.1| Protein of unknown function UPF0004:tRNA-i(6)A37 modification
           enzyme MiaB [Xylella fastidiosa Ann-1]
          Length = 375

 Score =  372 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 156/377 (41%), Positives = 229/377 (60%), Gaps = 17/377 (4%)

Query: 103 VVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-ERARFGKRVVDTDYSVEDKFE 161
           + V GCVA  EG+ I++R+P V++V GPQT +RLP+++  R    +  +D  +   +KF+
Sbjct: 1   IGVGGCVASQEGQTIVKRAPYVDLVFGPQTLHRLPDMIRARREQNRPQIDISFPEIEKFD 60

Query: 162 RLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNG 221
            L        R  G +AF++I EGC K+C+FCVVPYTRG E+SR    V+ E   L   G
Sbjct: 61  HLPT-----PRAEGPSAFVSIMEGCSKYCSFCVVPYTRGEEVSRPFEDVLTEIAHLATQG 115

Query: 222 VCEITLLGQNVNAWRGKGLDGEK----------CTFSDLLYSLSEIKGLVRLRYTTSHPR 271
           V EI LLGQNVNA+RG    G                 L+ ++++ + + R+R+TTSHP 
Sbjct: 116 VREINLLGQNVNAYRGAMDPGPSNNTNPAAPPYADLGLLIRAIAQFESIGRIRFTTSHPL 175

Query: 272 DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAI 331
           + SD L++A+ D+  L  +LHLPVQSGSDRIL +M R +TA E++  I ++R+VRPDI+I
Sbjct: 176 EFSDSLVEAYRDIPQLANHLHLPVQSGSDRILSAMKRGYTALEFKSKIRKLRAVRPDISI 235

Query: 332 SSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERL 391
           SSDFI+GFPGE+D DF+ TM L++ IG+ Q+FSF YS R GTP SN+ +   + +K  RL
Sbjct: 236 SSDFIIGFPGESDTDFQKTMQLIEDIGFDQSFSFIYSRRPGTPASNLEDHTPDEIKRTRL 295

Query: 392 LCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNSKNHNIGDI 450
             LQK +       +   +G +  VL+E   K+   +L G++  ++ V        IG  
Sbjct: 296 EHLQKHINAYAADISKRMIGTVQTVLVEGPSKKNPNELTGKTENMRPVNFPGNPRLIGQF 355

Query: 451 IKVRITDVKISTLYGEL 467
           I V IT+   ++L G +
Sbjct: 356 IDVHITEALTNSLRGRV 372


>gi|154498439|ref|ZP_02036817.1| hypothetical protein BACCAP_02428 [Bacteroides capillosus ATCC
           29799]
 gi|150272507|gb|EDM99692.1| hypothetical protein BACCAP_02428 [Bacteroides capillosus ATCC
           29799]
          Length = 449

 Score =  372 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 131/452 (28%), Positives = 226/452 (50%), Gaps = 26/452 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC  N+ ++ +M  +    G++ V + + AD+ VLNTC   + A  +    + 
Sbjct: 11  KIAFVSLGCAKNLVNTEQMMALCRDAGHQVVANPEGADVAVLNTCGFIDSAKSEAIDNIL 70

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +  LK+     G    ++V GC++Q   +E++   P V+ V+G  +Y  +   +E    
Sbjct: 71  ELAELKSK----GTLGKLLVTGCLSQRYKDELMEEMPEVDGVLGTGSYTDIVPAVESVME 126

Query: 146 GKRVV---DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           G +     D D++VED    +S            TA+L I EGCD  C++C++PY RG  
Sbjct: 127 GDQPTFFGDIDHTVEDGARMVSTP--------AYTAYLKIAEGCDNRCSYCIIPYLRGRY 178

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK-GLV 261
            SR++  ++ EA++L D GV EI ++ Q++    G  L  +K    +LL  L ++    V
Sbjct: 179 RSRTMESLLAEAKELADRGVKEIIVIAQDIT-RYGTDLY-KKRMLGELLKELCKLPFHWV 236

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           RL Y      ++ D LI        ++ Y+ +P+Q  +D++L+SMNRR T  E   ++D+
Sbjct: 237 RLHYLYPD--ELDDDLIDVIASEPKILKYIDIPLQHINDKLLRSMNRRGTKAEILALLDK 294

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R+  P + + +  I G PGE +++F    D + +    +A  F++SP  GTP + M +Q
Sbjct: 295 LRARIPGLVLRTSLIAGLPGEGEEEFEELCDFLREAHIERAGIFQFSPEEGTPAAVMPDQ 354

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQS 437
           VD +  A R+  L         +FN++ +G+ +EVL E    + G   GR    SP +  
Sbjct: 355 VDPDTAARRVELLVDLQSRVMDAFNESRLGETLEVLCEGFDPDMGCYAGRSYADSPDVDG 414

Query: 438 VVLNSKNHNI--GDIIKVRITDVKISTLYGEL 467
            V  +    +  G  + VRIT  +   L GE+
Sbjct: 415 KVFFTAAGLVPAGTFVNVRITGTEDGDLMGEI 446


>gi|150025462|ref|YP_001296288.1| hypothetical protein FP1403 [Flavobacterium psychrophilum JIP02/86]
 gi|238065358|sp|A6GZF6|RIMO_FLAPJ RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|149772003|emb|CAL43479.1| Protein of unknown function [Flavobacterium psychrophilum JIP02/86]
          Length = 433

 Score =  372 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 123/458 (26%), Positives = 220/458 (48%), Gaps = 33/458 (7%)

Query: 17  IVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA 76
           +  + +   +  V + GC  NVYDS  +     + G   V+  ++ +++V+NTC   + A
Sbjct: 1   MRTKSLKKNKINVITLGCSKNVYDSEVLMGQLKASGKNVVH-EEEGNIVVINTCGFIDNA 59

Query: 77  AEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL 136
             +  + +    + K      G    V V GC+++    ++ +  P V+   G      L
Sbjct: 60  KAESVNTILEYADKKER----GLVDKVFVTGCLSERYRPDLEKEIPNVDQYFGT---TEL 112

Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
           P LL       + +  DY  E   ERL+     Y       A+L I EGCD+ C+FC +P
Sbjct: 113 PALL-------KALGADYRHELLGERLTTTPKNY-------AYLKISEGCDRPCSFCAIP 158

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256
             RG  +S+++ ++V EA  L  NGV E+ L+ Q++  + G  L  +K    +LL +L +
Sbjct: 159 LMRGKNVSQTIEKLVKEAEGLAKNGVKELILIAQDLT-YYGLDLY-KKRALGELLEALVK 216

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           I+G+  +R   + P      +++       +  Y+ +P+Q  SD ILKSM R  T  +  
Sbjct: 217 IEGIEWIRLHYAFPTGFPMDVLEIMKREPKICNYIDIPLQHISDSILKSMKRGTTREKTT 276

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
           +++   R+  P +AI +  IVG+PGET++DF    + V ++ + +   F YS    T   
Sbjct: 277 KLLKDFRAAVPGMAIRTTLIVGYPGETEEDFEILKEFVQEMKFDRMGCFAYSHEENTGAY 336

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS---- 432
            +++ V + VK  R L +     +     N   +GQ    +I++  KE G  VGR+    
Sbjct: 337 ELVDDVPDEVKQARSLEIMDLQSQISWDLNQEKLGQTFRCIIDR--KEGGHFVGRTEFDS 394

Query: 433 PWLQS-VVLNSKNHNI--GDIIKVRITDVKISTLYGEL 467
           P + + V++++  H +  G+ + ++I +     LYGE 
Sbjct: 395 PDVDNEVLIDATKHYVKTGEFVNIKIIEATEFDLYGEP 432


>gi|301155233|emb|CBW14698.1| predicted SAM-dependent methyltransferase [Haemophilus
           parainfluenzae T3T1]
          Length = 453

 Score =  372 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 136/465 (29%), Positives = 217/465 (46%), Gaps = 42/465 (9%)

Query: 20  QCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEK 79
           Q   P   FV S GC  N+ DS R+     + GY  V S ++ DL+++NTC   + A ++
Sbjct: 10  QKSTPNIGFV-SLGCPKNLVDSERILTELRTDGYNIVPSYENVDLVIVNTCGFIDSAVQE 68

Query: 80  VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL 139
               +G              +  V+V GC+  A+ ++I +  P V  V GP +Y  +   
Sbjct: 69  SLEAIGEALE---------ENGRVIVTGCLG-AKEDQIRQVHPKVLEVSGPHSYEAVMAQ 118

Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           + +              E       +   G        A+L I EGCD  CTFC++P  R
Sbjct: 119 VHKY---------VPKPEHNPYTSLVPKQGVKLTPKHYAYLKISEGCDHRCTFCIIPSLR 169

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE-------------KCT 246
           G   SRS++QV+DEA++L D GV E+ ++ Q+ +A+       E             K  
Sbjct: 170 GDLESRSITQVLDEAKRLADAGVKELLVVSQDTSAYAMDTQRKEGGVKTAFWNGMPIKND 229

Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306
              L   L ++   VRL Y   +P       + A G   +L+PYL +P+Q  S +ILK+M
Sbjct: 230 LMTLCKQLGKLGIWVRLHYVYPYPHVDDLIPLMAEG---LLLPYLDIPLQHASPKILKAM 286

Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
            R        + I + R + PD+ + S FIVGFPGET++DF+  +D + +    +   FK
Sbjct: 287 KRPGKIDRTLERIKQWREICPDLTLRSTFIVGFPGETEEDFQMLLDFLKEAQLDRVGCFK 346

Query: 367 YSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK- 425
           +SP  G P + M +QV E+VK ER     +  +E         +GQ ++V++++   E  
Sbjct: 347 FSPVEGAPATEMADQVPEDVKEERFHRFMQLQQEISAERLKQKIGQTLDVIVDEIDDEGI 406

Query: 426 -GKLVGRSPWLQSVV----LNSKNHNIGDIIKVRITDVKISTLYG 465
            G+    +P +  +V    L+     +G+ IKV IT      L+G
Sbjct: 407 IGRTKADAPEVDGLVYIENLSGTPVKVGEFIKVTITHSDEYDLWG 451


>gi|282850499|ref|ZP_06259878.1| MiaB-like protein [Veillonella parvula ATCC 17745]
 gi|294792122|ref|ZP_06757270.1| MiaB tRNA modifying enzyme-like protein [Veillonella sp. 6_1_27]
 gi|294793993|ref|ZP_06759130.1| MiaB tRNA modifying enzyme-like protein [Veillonella sp. 3_1_44]
 gi|282579992|gb|EFB85396.1| MiaB-like protein [Veillonella parvula ATCC 17745]
 gi|294455563|gb|EFG23935.1| MiaB tRNA modifying enzyme-like protein [Veillonella sp. 3_1_44]
 gi|294457352|gb|EFG25714.1| MiaB tRNA modifying enzyme-like protein [Veillonella sp. 6_1_27]
          Length = 448

 Score =  372 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 120/456 (26%), Positives = 211/456 (46%), Gaps = 19/456 (4%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + ++    S GC  N+ D+  M  +    GY     + +ADLIV+NTC   EKA  +  +
Sbjct: 1   MGKKLGYVSLGCAKNLVDTEVMLGLLRDNGYSITEDLSEADLIVVNTCTFIEKAKAESIN 60

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +  +   K     +G    ++VAGC++Q   +E+ +  P ++ ++G   + ++   ++ 
Sbjct: 61  TILEVAQYKE----DGTCKGLIVAGCLSQQYQDELFQEIPEIDALIGTGAWDQVMVAVDA 116

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
              G R    +       ER+  +          +A++ I EGC+  CTFC++P  RG  
Sbjct: 117 IEHGNRSCIMENITNIYDERMPRIQ----TTPRYSAYVKIAEGCNNGCTFCIIPKVRGAF 172

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR++  +  E  +L   GV E+ L+ Q+  +  G  L+  K   + LL  L+ ++G+  
Sbjct: 173 RSRTIESIKAEVERLAATGVKEVVLIAQDTTS-YGIDLNAGKPLLTTLLKELTTVEGIEW 231

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R    +P   SD L+    +   L  Y+ +P+Q  ++ ILK MNRR    +  +++ +I
Sbjct: 232 IRMLYLYPTFFSDELLDIIVNEPKLCKYVDIPLQHVNNDILKQMNRRDDRNDIERLLKKI 291

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+    I + +  IVGFPGETD+ F    D V +I +     F YS   GTP     +Q+
Sbjct: 292 RNAPTHITLRTSIIVGFPGETDEQFEELCDFVKEIKFDNMGVFTYSQEDGTPAGAREDQI 351

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-------EKGKLVGRSPWL 435
            E VK ER   L           N    G I   ++E+  +        KG+L  ++P +
Sbjct: 352 PEEVKEERYHVLMSIQAAISEENNRNLEGTIDYAMVEEIEEGENNTLLAKGRLKSQAPDV 411

Query: 436 QSVVLN---SKNHNIGDIIKVRITDVKISTLYGELV 468
              +      ++   GDI+KV++       +   +V
Sbjct: 412 DGNMYIEDCGEDIQPGDILKVQVEQGFAYDVVATVV 447


>gi|238066627|sp|A4VKC4|RIMO_PSEU5 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
          Length = 440

 Score =  372 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 126/457 (27%), Positives = 206/457 (45%), Gaps = 36/457 (7%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
                S GC     DS R+      +GY+ V S +DAD++V+NTC   + A  +    +G
Sbjct: 6   TVGFVSLGCPKATVDSERILTQLRMEGYQIVPSYEDADVVVVNTCGFIDSAKAESLDAIG 65

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                         +  V+V GC+   +   I    P V  V GPQ Y ++   +     
Sbjct: 66  EA---------IAENGKVIVTGCMG-VDENNIRGVHPSVLAVTGPQQYEQVVNAVHE--- 112

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
               V       D F  L    G     R   A+L I EGC+  C+FC++P  RG  +SR
Sbjct: 113 ----VVPPSIEHDPFVDLVPPQGIKLTPRHY-AYLKISEGCNHSCSFCIIPSMRGKLVSR 167

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE---------KCTFSDLLYSLSE 256
            +  V+ EA +L+  GV E+ ++ Q+ +A  G  L  +         K    +L   L +
Sbjct: 168 PVGDVLSEAERLVKAGVKEVLVISQDTSA-YGVDLKYKLDFWNGQPVKTRMLELCEELGK 226

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           +   VRL Y   +P       + A G    ++PYL +P Q  S ++LK+M R     +  
Sbjct: 227 MGVWVRLHYVYPYPNVDDVIPLMAAG---KILPYLDIPFQHASPKVLKAMKRPAFEDKTL 283

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
             I + R + P++ I S FIVGFPGET++DF+  +D + +    +   F+YSP  G P  
Sbjct: 284 ARIKKWREICPELTIRSTFIVGFPGETEEDFQYLLDWLTEAQLDRVGCFQYSPVDGAPAE 343

Query: 377 NM-LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSP 433
            M LE V + +K +R        +    +     VG+ ++VLI++  ++   G+    +P
Sbjct: 344 AMNLEPVPDEIKQDRWDRFMAHQQAISAARLQLKVGKELDVLIDEVDEDGAIGRSWADAP 403

Query: 434 WLQSVVLNSKN--HNIGDIIKVRITDVKISTLYGELV 468
            +  +V          GD ++VR+T+     L+ E++
Sbjct: 404 EIDGMVYVDSEQPLQPGDKVRVRVTNADEYDLWAEVI 440


>gi|163755928|ref|ZP_02163045.1| 2-methylthioadenine synthetase [Kordia algicida OT-1]
 gi|161324099|gb|EDP95431.1| 2-methylthioadenine synthetase [Kordia algicida OT-1]
          Length = 435

 Score =  372 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 121/460 (26%), Positives = 218/460 (47%), Gaps = 33/460 (7%)

Query: 17  IVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA 76
           +  + +   +  V + GC  NVYDS  +     + G E  +  ++ +++V+NTC     A
Sbjct: 1   MRTKTLKKNKINVVTLGCSKNVYDSEVLMGQLKANGKEVAH-EEEGNIVVINTCGFINNA 59

Query: 77  AEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL 136
            E+  + +    N K      G    V V GC+++    ++    P V+   G     RL
Sbjct: 60  KEESVNTILDYVNKKEE----GVVDKVFVTGCLSERYKPDLEAEIPDVDQYFGTSDLPRL 115

Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
            + L            DY  E   ER++     Y       A+L I EGCD+ C+FC +P
Sbjct: 116 LKAL----------GADYKHELIGERITTTPKNY-------AYLKIAEGCDRPCSFCAIP 158

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256
             RG   S+ + ++V+E  KL   GV E+ L+ Q++  + G  L  +K   ++LL +L +
Sbjct: 159 LMRGKHKSKPIEELVEETEKLAAKGVKELILIAQDLT-YYGLDLY-KKRNLAELLQNLVK 216

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           ++G+  +R   + P      +++   +   +  YL +P+Q  +D ILKSM R     +  
Sbjct: 217 VEGIEWIRLHYAFPAGFPMDVLEVMNNEPKICNYLDIPLQHIADDILKSMRRGTNQAKTT 276

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
           +++   R+  P++ I +  IVG+PGET++ F+   + V ++ + +   F YS    T   
Sbjct: 277 KLLKEFRAAVPNMTIRTTLIVGYPGETEEHFQTLKNWVQEMRFERLGCFTYSHEENTHAY 336

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS---- 432
           N+ + V E VK +R   + +   +     N   +GQ  + +I++  KE    VGR+    
Sbjct: 337 NLEDDVPEEVKQDRANQIMEIQSQISWELNQEKIGQTFKCIIDR--KEGNYFVGRTEFDS 394

Query: 433 PWLQS-VVLNSKNHNI--GDIIKVRITDVKISTLYGELVV 469
           P + + V++++    +  G+ + V+ITD     LYGE  V
Sbjct: 395 PDVDNEVLIDAAKFYVKQGEFVDVKITDAADFDLYGEPAV 434


>gi|118474317|ref|YP_892518.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Campylobacter fetus
           subsp. fetus 82-40]
 gi|229890467|sp|A0RQN5|MIAB_CAMFF RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|118413543|gb|ABK81963.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Campylobacter fetus
           subsp. fetus 82-40]
          Length = 434

 Score =  372 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 161/449 (35%), Positives = 238/449 (53%), Gaps = 20/449 (4%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           V ++ F+++ GC MNV DS  +       + YE  N ++DADLI++NTC +REK   K++
Sbjct: 3   VKKKLFIETLGCAMNVRDSEHIIAELSQKENYEVTNIIEDADLILINTCSVREKPVHKLF 62

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S +G           +     + V GC A   G E+ +R+P V+ V+G +   ++   L 
Sbjct: 63  SEVGTY------EKAKKKGAKIGVCGCTASHLGSEVFKRAPYVDFVLGARNISKITTALN 116

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
             +F    ++ D S     +          R     +F+ I  GCDK CT+C+VP TRG 
Sbjct: 117 TPKFVSVDINHDESEYAFGDF---------RSSPYKSFVNIMIGCDKKCTYCIVPQTRGD 167

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG--EKCTFSDLLYSLSEIKG 259
           EIS     ++ E RK   +G  EI LLGQNVN   GK   G  EK  FSDLL  +SE+ G
Sbjct: 168 EISIPKDIILKEVRKAASSGAKEIFLLGQNVN-NYGKRFSGTHEKIDFSDLLNLISEVDG 226

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           + R+R+T+ HP  M D  +K       +   +H+P+QSGS+ ILK+M R +T   +    
Sbjct: 227 VERIRFTSPHPLHMDDKFLKEFSTNPKICKSMHMPLQSGSNEILKAMKRGYTKEWFLDRA 286

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            ++R +  D+ IS+D IV FPGE+D DF  TM +V+ I + Q FSFKYS R  TP ++M 
Sbjct: 287 LKLREICSDVTISTDIIVAFPGESDRDFADTMSVVESIKFEQMFSFKYSSRPLTPAASMT 346

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV 439
            QV+ ++ + RL  LQ +  E       A    I EV  E+  +    + GR+     V 
Sbjct: 347 NQVNSDIASRRLSTLQARHTEILDEIVKAQKNSIHEVYFEEL-RANSSVAGRTFNNFLVQ 405

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
            N     +G I+KV+ITD K   LYG+++
Sbjct: 406 TNGSEELLGKILKVKITDPKRMVLYGQII 434


>gi|317056861|ref|YP_004105328.1| MiaB-like tRNA modifying enzyme YliG [Ruminococcus albus 7]
 gi|315449130|gb|ADU22694.1| MiaB-like tRNA modifying enzyme YliG [Ruminococcus albus 7]
          Length = 443

 Score =  372 bits (955), Expect = e-101,   Method: Composition-based stats.
 Identities = 122/451 (27%), Positives = 209/451 (46%), Gaps = 16/451 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           +  R  + S GC  N  D+  M      +GYE V+    AD++++NTC   E A ++   
Sbjct: 1   MSTRVGMVSLGCPKNQVDAEHMLFDLKKEGYELVSDAALADVVIVNTCGFIESAKQEAID 60

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +     LK      G    V+  GC+A+   +E+ +  P ++ VVG  +   + +++  
Sbjct: 61  TILEFCTLKQE----GRIKHVIATGCLAERYRDEMKKEIPELDAVVGLGSNGNIADIIRD 116

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
               +  +    S  D    L +  G         A++ I EGC   CT+C +P  RG  
Sbjct: 117 IYRTEESICAYGSKTD----LPMEGGRLISTEPFFAYIKIAEGCSNCCTYCAIPAIRGKF 172

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR +  +++EA+ L ++GV E+ ++ Q+     G+ L G K    +LL  L EI G   
Sbjct: 173 RSRKMEDILEEAKWLAEHGVTELVVIAQDTT-RYGEDLYG-KSMLPELLKKLCEIDGFKW 230

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R   S+P  +SD  I      + L+ Y+ +P+Q  +  ILK MNR  +     ++I ++
Sbjct: 231 IRTLYSYPERISDEFIDVLASEEKLVKYIDMPIQHCNAEILKRMNRVGSEAYLLELIQKL 290

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+  PDI + +  I GFPGET+  F    + V  +G+ +   F YSP  GT   +M +QV
Sbjct: 291 RARIPDIVLRTTLIAGFPGETEAQFEELCEFVKNVGFERLGCFAYSPEEGTKAYSMPDQV 350

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSV 438
           DE  +  R   + ++       +N A +G+ +E++ E   +      GR    +P +   
Sbjct: 351 DEQTRNRRADIIMQEQMLVADRYNQAQLGKTVEIVCEGFDRYAECYFGRGAADAPDIDGK 410

Query: 439 VLNSKNHN--IGDIIKVRITDVKISTLYGEL 467
           V  +      +G  +KV + D     L G +
Sbjct: 411 VFFTSEKKVAVGQYVKVELFDTLDYDLLGTV 441


>gi|319787551|ref|YP_004147026.1| MiaB-like tRNA modifying enzyme YliG [Pseudoxanthomonas suwonensis
           11-1]
 gi|317466063|gb|ADV27795.1| MiaB-like tRNA modifying enzyme YliG [Pseudoxanthomonas suwonensis
           11-1]
          Length = 455

 Score =  372 bits (955), Expect = e-101,   Method: Composition-based stats.
 Identities = 131/457 (28%), Positives = 203/457 (44%), Gaps = 39/457 (8%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC   + DS R+      +GY+ V + DDAD++V+NTC   + A  +    +G
Sbjct: 7   KVGFVSLGCPKALVDSERILAQLRVEGYDIVPTYDDADVVVVNTCGFIDSAVAESLDAIG 66

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                         +  V+V GC+ +   E I  + P V  V GPQ Y  + E +  A  
Sbjct: 67  EA---------MNENGKVIVTGCLGKKS-EMIREQYPDVLSVSGPQDYTSVMEAVHAALP 116

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            K          D F  L + D G        A+L I EGC+  C+FC++P  RG  +SR
Sbjct: 117 PK---------HDPFLDL-VPDYGLKLTPHHYAYLKISEGCNHRCSFCIIPSMRGDLVSR 166

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK---------CTFSDLLYSLSE 256
            + +V+ EA +L+  GV E+ ++ Q+ +A  G  +                  L   LSE
Sbjct: 167 PVDEVLREAERLVKGGVRELLVVSQDTSA-YGVDVRYAPGTWRGREYATRMKALCEGLSE 225

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           +    RL Y   +P       + A G    ++PYL +P Q  S RILK M R     +  
Sbjct: 226 LDAWTRLHYVYPYPHVDDVIPLMAEG---KVLPYLDIPFQHASPRILKLMKRPGAVDKTL 282

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
           + I R R++ P + + S FIVGFPGET+ +F   +D +D+    +  +F YSP  G   +
Sbjct: 283 ERIQRWRAICPGLTLRSTFIVGFPGETEQEFEELLDFLDEAQLDRVGAFAYSPVEGASAN 342

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE--KGKLVGRSPW 434
            +   V E VK ERL    ++  E   +  +A VG +   L++    E    + +  +P 
Sbjct: 343 ALPGAVPEEVKQERLARFMERQGEISAARLEAKVGSVQRCLVDFVDGELAIARSMADAPE 402

Query: 435 LQSVVLNSK----NHNIGDIIKVRITDVKISTLYGEL 467
           +   V            G+ + VRI       LYGE+
Sbjct: 403 IDGTVQIQDGRDAGLQPGEFVDVRIMGSDEHDLYGEV 439


>gi|257440231|ref|ZP_05615986.1| RNA modification enzyme, MiaB family [Faecalibacterium prausnitzii
           A2-165]
 gi|257197265|gb|EEU95549.1| RNA modification enzyme, MiaB family [Faecalibacterium prausnitzii
           A2-165]
          Length = 441

 Score =  372 bits (955), Expect = e-101,   Method: Composition-based stats.
 Identities = 125/448 (27%), Positives = 206/448 (45%), Gaps = 16/448 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC  N  D   M  +  S G+E V  + +AD+I++NTC   E A  +    + 
Sbjct: 2   KIACISLGCPKNQVDLDVMVHILLSAGHETVADLGEADVILVNTCGFIESAKTEAIENIL 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                K        +L V+V GC+A+    +I    P V+ VVG  +   +  ++ R   
Sbjct: 62  EACAYKQQ----NPELKVIVTGCLAERYRSQIEEEIPEVDAVVGCASNKAIDTIVARLFH 117

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G+  +++  + +D      +            A+L I EGC+  C +C +P  RG   SR
Sbjct: 118 GENHLESYGAKKD----FPLGGKRVIGTPAHYAYLKIAEGCNNRCHYCAIPGIRGPLHSR 173

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            L+  V EAR L   GV E+ ++ Q+  A  G+   G+  +  +LL  L+++ GL  +R 
Sbjct: 174 DLADCVAEARWLAGEGVKELIVVAQDPTA-YGEDW-GKPGSICELLDKLNKVPGLEWIRI 231

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
             ++P  ++D  I A    + ++PYL LP+Q  +D ILK+MNRR T  E  ++I ++R  
Sbjct: 232 MYAYPERITDDFIAAMKRNEKVVPYLDLPIQHCNDTILKNMNRRSTRAELLEVIGKLRRE 291

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P I + +  I GFPGET++ F    + V ++ + +   F YS    T  + M  Q+D+ 
Sbjct: 292 IPGITLRTTLIAGFPGETEEQFEDLCNFVKEVRFDRLGCFAYSAEENTVAAKMDGQIDQE 351

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG----KLVGRSPWLQSVVLN 441
            K  R   + +             VGQ + VL +   +E G    +  G +P +   V  
Sbjct: 352 TKDRRAELVMQIQTGIMAQKQAEKVGQTVRVLCDGIDEESGLYLCRTTGDAPEVDGNVCV 411

Query: 442 SKNHN--IGDIIKVRITDVKISTLYGEL 467
           S       G    V + D  +  LYG +
Sbjct: 412 SSEEPLYPGQFYDVLVEDSDLYDLYGTV 439


>gi|308182443|ref|YP_003926570.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Helicobacter
           pylori PeCan4]
 gi|308064628|gb|ADO06520.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Helicobacter
           pylori PeCan4]
          Length = 437

 Score =  372 bits (955), Expect = e-101,   Method: Composition-based stats.
 Identities = 140/445 (31%), Positives = 239/445 (53%), Gaps = 19/445 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + ++++ GC MN  DS  +        Y+  N    ADLI++NTC +REK   K++S +G
Sbjct: 2   KVYIETMGCAMNSRDSDHLLSELSKLDYKETNDPKTADLILINTCSVREKPERKLFSEIG 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           +   +K        +  + V GC A   G +IL+++P V+ V+G +   ++ +++ + + 
Sbjct: 62  QFAKIKK------PNAKIGVCGCTASHMGADILKKAPSVSFVLGARNVSKISQVIHKEKA 115

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            +  +D D S        +     + +K  + + L I  GCDK C +C+VP+TRG E+S 
Sbjct: 116 VEVAIDYDES--------AYAFEFFEKKAQIRSLLNISIGCDKKCAYCIVPHTRGKELSI 167

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL-DGEKCTFSDLLYSLSEIKGLVRLR 264
            +  ++ EA KL +NG  E+ LLGQNVN +  +   +  K  FSDLL  LSEI G+ R+R
Sbjct: 168 PMDLILKEAEKLANNGTKELMLLGQNVNNYGVRFSSEHAKVDFSDLLDKLSEISGIERIR 227

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +T+ HP  M+D  ++       +   +H+P+QSGS  +LK M R ++   +   ++R+++
Sbjct: 228 FTSPHPLHMNDAFLERFAKNPKVCKSIHMPLQSGSSAVLKMMRRGYSKEWFLNRVERLKA 287

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           + P++ IS+D IVGFP E+D DF  TM++++K+ +   +SF YSPR  T      E+V  
Sbjct: 288 LVPEVGISTDIIVGFPNESDKDFEDTMEVLEKVRFDTLYSFIYSPRPFTEAGAWKERVPL 347

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV---GRSPWLQSVVLN 441
            V + RL  LQ + +E         VG+   VL+E   +   ++V   GRS   + + + 
Sbjct: 348 EVSSSRLERLQNRHKEILEEKAKLEVGKTHVVLVENRREIDNQIVGFEGRSDTGKFIEVA 407

Query: 442 -SKNHNIGDIIKVRITDVKISTLYG 465
             +  N G++++V I       L  
Sbjct: 408 CKEKRNPGELVRVEIVSHSKGRLMA 432


>gi|257465559|ref|ZP_05629930.1| MiaB-like tRNA modifying enzyme YliG [Actinobacillus minor 202]
 gi|257451219|gb|EEV25262.1| MiaB-like tRNA modifying enzyme YliG [Actinobacillus minor 202]
          Length = 444

 Score =  372 bits (955), Expect = e-101,   Method: Composition-based stats.
 Identities = 128/455 (28%), Positives = 208/455 (45%), Gaps = 40/455 (8%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
             S GC  N+ DS R+     S GY  + S + ADL+++NTC   + A ++    +G   
Sbjct: 10  FISLGCPKNLVDSERILTELRSDGYNIIPSYEGADLVIVNTCGFIDSAVQESLESIGEAL 69

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
                         V+V GC+  A+  +I    P V  + GP +Y  + + + +      
Sbjct: 70  EANGK---------VIVTGCLG-AKENQIREVHPKVLEITGPHSYEAVMKHVHKY----- 114

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
                   E       +   G        A+L I EGCD  CTFC++P  RG   SRS+ 
Sbjct: 115 ----VPKPEYNPYVNLVPKQGVKLTPKHYAYLKISEGCDHRCTFCIIPSMRGDLDSRSIV 170

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE------------KCTFSDLLYSLSE 256
           QV+DEA++L+D+GV E+ ++ Q+ +A+       E            K     L   L  
Sbjct: 171 QVLDEAKRLVDSGVKELLIVSQDTSAYALDKKKEEGTKTVFWNGMPIKNNLITLCEQLGS 230

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           +   VRL Y   +P       + A G    ++PYL +P+Q  S +ILK+M R  +     
Sbjct: 231 MGVWVRLHYVYPYPHVDDLIPLMAQG---KILPYLDIPLQHASPKILKAMKRPGSIERTL 287

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
           + I + R + P++ + S FIVGFPGET++DF+  +D + +    +   FK+SP  G   +
Sbjct: 288 ERIKKWREICPELTLRSTFIVGFPGETEEDFQMLLDFLKEAQLDRVGCFKFSPVEGAEAT 347

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPW 434
            M +QV E+VK ER     +  +E         +G+ + V++++   E   G+ +  +P 
Sbjct: 348 EMADQVPEDVKEERFHRFMQLQQEISAQRLQQKIGKTLAVIVDEIDDEGIIGRSMADAPE 407

Query: 435 LQSVVLNSK----NHNIGDIIKVRITDVKISTLYG 465
           +  VV           +G II V IT+     L+G
Sbjct: 408 IDGVVYVDNLSEMEVTVGQIISVTITNADEYDLWG 442


>gi|304312821|ref|YP_003812419.1| hypothetical protein HDN1F_32010 [gamma proteobacterium HdN1]
 gi|301798554|emb|CBL46784.1| Conserved hypothetical protein [gamma proteobacterium HdN1]
          Length = 448

 Score =  372 bits (955), Expect = e-101,   Method: Composition-based stats.
 Identities = 127/466 (27%), Positives = 208/466 (44%), Gaps = 33/466 (7%)

Query: 13  MVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHI 72
           M +   +     Q+    S GC   + DS R+       GYE V + ++AD++V+NTC  
Sbjct: 1   MTASNDETIQSTQKVGFISLGCPKALVDSERILTQLRIDGYEIVPTYENADIVVVNTCGF 60

Query: 73  REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT 132
            + A ++    +G              +  V+V GC+  A+  +I    P V  V GPQ 
Sbjct: 61  IDAAKQESLDAIGEA---------LTENGRVIVTGCMG-ADAAKIREVHPKVLAVTGPQA 110

Query: 133 YYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTF 192
           Y  +   + +       V T        + +     G        A+L I EGC+  CTF
Sbjct: 111 YEEVVSAVHQY------VPTQLGHNPFIDLIPPT--GIKLTPRHYAYLKISEGCNHRCTF 162

Query: 193 CVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--K 244
           C++P  RG  +SR +  V+ EA++L+D G  E+ ++ Q+ +A+      R    DG   K
Sbjct: 163 CIIPSMRGDLVSRPIGDVMGEAKRLVDAGTQELLIISQDTSAYGVDLKYRTGFWDGRPVK 222

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304
              +DL  +L E+   VRL Y   +P       + A G    ++PYL +P Q GS RIL+
Sbjct: 223 TKLTDLCEALGELGVWVRLHYVYPYPHVDHIIPMMAEG---KILPYLDIPFQHGSPRILQ 279

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
            M R          I + R++ PD+ + S FIVGFPGET+ DF+  +D +++    +  +
Sbjct: 280 LMKRPGDIDNTLSRIHQWRNICPDLTLRSTFIVGFPGETEGDFQQLLDFIEEAQLDRVGA 339

Query: 365 FKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE 424
           F YSP  G   + + + V E +K ERL    +             +G+ IEVLI++  +E
Sbjct: 340 FAYSPVEGATANALPDPVPEELKQERLARFMEVQARISADKLQKKIGKRIEVLIDEVDEE 399

Query: 425 K--GKLVGRSPWLQSVVL--NSKNHNIGDIIKVRITDVKISTLYGE 466
              G+    +P +  +V          G  +   +       L+ +
Sbjct: 400 GAVGRSHADAPEIDGMVFLNGDTELKPGQKVMATVFAADEHDLWAD 445


>gi|118444753|ref|YP_878562.1| MiaB-like tRNA modifying enzyme [Clostridium novyi NT]
 gi|118135209|gb|ABK62253.1| MiaB-like tRNA modifying enzyme [Clostridium novyi NT]
          Length = 433

 Score =  372 bits (955), Expect = e-101,   Method: Composition-based stats.
 Identities = 140/446 (31%), Positives = 235/446 (52%), Gaps = 17/446 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    + GC++N+Y+S  M + F   GYE V   + AD+ V+NTC +   + +K    L 
Sbjct: 2   KVAFATLGCRVNMYESEAMAEKFIKNGYEVVEFDEMADVYVVNTCTVTNMSDKKSRQMLS 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA-R 144
           R +       ++  + ++   GC  Q   E++ +    V+V++G +    +   + RA  
Sbjct: 62  RAK-------RKNPESIIAAVGCYTQIAPEKV-KEIGDVDVILGTRNKGDIVYWVNRAKE 113

Query: 145 FGKRVVDT-DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            GK +V+  D     KFE L+I +     +    AFL IQ+GC+ FC++C++P+ RG   
Sbjct: 114 EGKTIVEVNDVLRNKKFEELNIEEY----QDKTRAFLKIQDGCNNFCSYCLIPFARGAVC 169

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           S++   ++DE +KL  +G  EI L G ++++  G  L+G+      +L  + EI G+ R+
Sbjct: 170 SKNPEIIIDEVKKLAAHGFKEIILSGIDISS-YGVDLEGD-WNLLTILKKIDEIDGITRV 227

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R  +  P   ++  IK  G L  L P+ HL +QSG +  LK MNR++T  E+  ++  +R
Sbjct: 228 RIGSIGPEFFNEDRIKEIGKLKKLCPHFHLSLQSGCNETLKRMNRKYTTEEFENVVKLLR 287

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
               DI+I++D IVGFPGET ++F  T + + +I  ++   FKYSPR GT    M  QVD
Sbjct: 288 KYIKDISITTDIIVGFPGETIEEFDETYEYLKRIELSKMHIFKYSPRTGTRAEKMENQVD 347

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKH-GKEKGKLVGRSPWLQSVVLNS 442
            N+K ER   L K     +  F D  +G+ +EVL E+    ++G   G +P    V+  S
Sbjct: 348 GNIKEERSKALIKLNEINEKKFIDKFIGEDMEVLYEQQCNNKEGYYEGYTPNYIKVISES 407

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
           K    G I+  ++ + K     G+++
Sbjct: 408 KEDLSGKIVNTKLIETKDEYAVGKII 433


>gi|167747072|ref|ZP_02419199.1| hypothetical protein ANACAC_01784 [Anaerostipes caccae DSM 14662]
 gi|167654032|gb|EDR98161.1| hypothetical protein ANACAC_01784 [Anaerostipes caccae DSM 14662]
          Length = 439

 Score =  372 bits (955), Expect = e-101,   Method: Composition-based stats.
 Identities = 136/439 (30%), Positives = 228/439 (51%), Gaps = 18/439 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +  V + GC++N Y+S  M DM    G E V+  + AD+ ++NTC +   A  K    L 
Sbjct: 7   KAAVVTLGCKVNQYESDAMFDMLTDAGAEIVSPKEGADIYIVNTCSVTNIAERKSRQMLH 66

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R + L         D +V   GC AQ   EE+ ++ P++++++G      L  +LE+   
Sbjct: 67  RAKKL-------NPDTVVAAVGCYAQVGKEEL-KKDPLIDLIIGNNKKKDLIPILEKYFE 118

Query: 146 GKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           G R      D S   ++E L +     + +    A++ +Q+GC++FC++C++PY RG   
Sbjct: 119 GHRRDAEVLDLSSGSEYEALHVRHLNEHTR----AYIKVQDGCNQFCSYCIIPYARGRVR 174

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR +  V+ E R L  NG  E  + G +V +  G  LDG+K    DLL  + ++ G+ R+
Sbjct: 175 SRDMEDVLSEIRGLAQNGCREFVITGIHVCS-YGTDLDGDK-GLIDLLEEIGKVGGVDRI 232

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R  +  P  +++  +K    ++   P+ HL +QSG D  LK MNR++T  E R+  + +R
Sbjct: 233 RLGSLEPGIITEDFVKRLQSIEQFCPHFHLSLQSGCDATLKRMNRKYTTDEIREKAEILR 292

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
               D A+++D IVGFPGET+++F AT   +++IG  +   FKYS R GT  + M +QV+
Sbjct: 293 KAYEDPALTTDIIVGFPGETEEEFEATRKFLEEIGLYEMHVFKYSKRAGTRAAVMEDQVN 352

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE--KGKLVGRSPWLQSVVLN 441
           +  KA R   L     E + +F +  +G   +VLIE+  +       VG +     V + 
Sbjct: 353 DQEKARRSAVLIAMNEEHKNAFENRQIGTRRKVLIEEKLRNSSGNFYVGHTKEYVKVAVE 412

Query: 442 SKNHNIGDIIKVRITDVKI 460
           S+      I++V +T +  
Sbjct: 413 SEEPLENQIVEVELTGITG 431


>gi|331269617|ref|YP_004396109.1| MiaB family RNA modification protein [Clostridium botulinum
           BKT015925]
 gi|329126167|gb|AEB76112.1| RNA modification enzyme, MiaB family [Clostridium botulinum
           BKT015925]
          Length = 444

 Score =  372 bits (955), Expect = e-101,   Method: Composition-based stats.
 Identities = 126/449 (28%), Positives = 224/449 (49%), Gaps = 22/449 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +  + S GC  N  DS  +      +  E VN+ ++AD+I++NTC   E + ++    + 
Sbjct: 5   KIGLISLGCDKNRIDSELLLGKLNEKN-EIVNNPNEADIIIVNTCGFIETSKQESIDTII 63

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +   K+   K      ++  GC+ Q   +E+    P +++++G   Y  +   ++    
Sbjct: 64  EMAQYKDKNCKM-----IIATGCLTQRYSKELQELIPEIDIMLGVNDYANIQNYIDEFFE 118

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGY-NRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
               +      + K+  +SI +G          A++ I EGCD FCT+C++P  RG   S
Sbjct: 119 NHNKI-----CQCKYSDVSINEGKRILTTNKHVAYIRISEGCDNFCTYCIIPKIRGKYRS 173

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           RS+  +V EA++L   GV E+ L+GQ+  A  G+ +  E     +L+ ++SEI+ +  +R
Sbjct: 174 RSIDSIVKEAKELSAMGVKELILVGQDT-AIYGRDIYNE-NKLPELIRAISEIEAIEWIR 231

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
              ++P +++D LI+     D +  YL +P+Q  S+ +LK MNRR T     + I ++RS
Sbjct: 232 VLYTYPEEITDELIEEIKSNDKVCNYLDIPIQHVSNTVLKRMNRRSTKEIISENIRKMRS 291

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
              D+ + +  IVGFPGET+D+F    + + +I +     FKYS    T  + M +Q+ E
Sbjct: 292 EIKDLCLRTSIIVGFPGETEDEFNELKEFIKEIKFDNLGVFKYSQEEDTAAARMKDQISE 351

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVVL 440
            +K  RL  L    ++     N   +G++ +VLIE H  E    +GR    +P +   + 
Sbjct: 352 ELKQSRLEELMIIQQQVSKEKNKNKIGKVYKVLIEGHNDE--YWIGRNYQMTPEIDGAIF 409

Query: 441 NSKN--HNIGDIIKVRITDVKISTLYGEL 467
              +   N+G+ I ++ITD     L G +
Sbjct: 410 FKCDKILNVGEFIYIKITDALEYDLIGVV 438


>gi|171472312|gb|ACB46863.1| MiaB [Pseudomonas stutzeri]
 gi|327480352|gb|AEA83662.1| putative FeS oxidoreductase [Pseudomonas stutzeri DSM 4166]
          Length = 440

 Score =  372 bits (955), Expect = e-101,   Method: Composition-based stats.
 Identities = 126/457 (27%), Positives = 206/457 (45%), Gaps = 36/457 (7%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
                S GC     DS R+      +GY+ V S +DAD++V+NTC   + A  +    +G
Sbjct: 6   TVGFVSLGCPKATVDSERILTQLRMEGYQIVPSYEDADVVVVNTCGFIDSAKAESLDAIG 65

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                         +  V+V GC+   +   I    P V  V GPQ Y ++   +     
Sbjct: 66  EA---------IAENGKVIVTGCMG-VDENNIRGVHPSVLAVTGPQQYEQVVNAVHE--- 112

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
               V       D F  L    G     R   A+L I EGC+  C+FC++P  RG  +SR
Sbjct: 113 ----VVPPSIEHDPFVDLVPPQGIKLTPRHY-AYLKISEGCNHSCSFCIIPSMRGKLVSR 167

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE---------KCTFSDLLYSLSE 256
            +  V+ EA +L+  GV E+ ++ Q+ +A  G  L  +         K    +L   L +
Sbjct: 168 PVGDVLSEAERLVKAGVKEVLVISQDTSA-YGVDLKYKLDFWNGQPVKTRMLELCEELGK 226

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           +   VRL Y   +P       + A G    ++PYL +P Q  S ++LK+M R     +  
Sbjct: 227 MGVWVRLHYVYPYPNVDDVIPLMAAG---KILPYLDIPFQHASPKVLKAMKRPAFEDKTL 283

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
             I + R + P++ I S FIVGFPGET++DF+  +D + +    +   F+YSP  G P  
Sbjct: 284 ARIKKWREICPELTIRSTFIVGFPGETEEDFQYLLDWLTEAQLDRVGCFQYSPVDGAPAE 343

Query: 377 NM-LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSP 433
            M LE V + +K +R        +    +     VG+ ++VLI++  ++   G+    +P
Sbjct: 344 AMDLEPVPDEIKQDRWDRFMAHQQAISAARLQLKVGKELDVLIDEVDEDGAIGRSWADAP 403

Query: 434 WLQSVVLNSKN--HNIGDIIKVRITDVKISTLYGELV 468
            +  +V          GD ++VR+T+     L+ E++
Sbjct: 404 EIDGMVYVDSEQPLQPGDKVRVRVTNADEYDLWAEVI 440


>gi|325269255|ref|ZP_08135874.1| RNA modification enzyme [Prevotella multiformis DSM 16608]
 gi|324988484|gb|EGC20448.1| RNA modification enzyme [Prevotella multiformis DSM 16608]
          Length = 432

 Score =  372 bits (955), Expect = e-101,   Method: Composition-based stats.
 Identities = 126/450 (28%), Positives = 204/450 (45%), Gaps = 35/450 (7%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEKVYSFLGR 86
           + + GC  N+ DS  +   F + GY   +       ++ V+NTC   E A E+  + +  
Sbjct: 8   IVTMGCSKNLVDSELIMKQFEANGYHCTHDTKHPQGEIAVINTCGFIEAAKEESINTILE 67

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
             N K    K G    + V GC++Q   +E+    P V+   G   Y +L   L +A   
Sbjct: 68  FVNRK----KNGQLNRLYVMGCLSQRYKDELEAELPEVDKFYGKFNYKQLLTDLGKA--- 120

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
                 D    +    L+          G  A++ I EGCD+ C +C +P   G   SR 
Sbjct: 121 ------DVPACNGVRHLTTP--------GHYAYVKIAEGCDRHCAYCAIPLITGRHHSRP 166

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
           L  ++DE R+L+  GV E  ++ Q +  + G  LDG K   ++L+  +++I+G+  +R  
Sbjct: 167 LEDILDEVRRLVGQGVKEFQIIEQELT-YYGVDLDG-KHHITELISRMADIEGVEWIRLH 224

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
            ++P      L+        +  YL +  Q  SD +L+ M+R  T  E   +I  IR   
Sbjct: 225 YAYPNQFPLDLLDVIAGKPNVCKYLDIAFQHISDHMLERMHRHVTRQETLDLIAEIRRRV 284

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP-GSNMLEQVDEN 385
           P I + +  +VGFPGET++DF      V K  + +  +F YS   GT   ++  + V E 
Sbjct: 285 PGIHLRTTLLVGFPGETEEDFEELKAFVRKTRFERMGAFAYSEEEGTYSATHYQDDVPEK 344

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVL- 440
           VK +RL  L +  +          VG I +V+I++  +E    +GR+    P +   VL 
Sbjct: 345 VKQQRLDELMEIQQGISEELESEKVGSIFKVIIDR--REGDYYIGRTEFCSPEVDPEVLV 402

Query: 441 --NSKNHNIGDIIKVRITDVKISTLYGELV 468
               K  +IG    VRIT      L+GE+V
Sbjct: 403 PAKGKALHIGRFYDVRITGSDEFDLFGEIV 432


>gi|331270008|ref|YP_004396500.1| MiaB-like tRNA modifying protein [Clostridium botulinum BKT015925]
 gi|329126558|gb|AEB76503.1| MiaB-like tRNA modifying enzyme [Clostridium botulinum BKT015925]
          Length = 433

 Score =  371 bits (954), Expect = e-101,   Method: Composition-based stats.
 Identities = 137/446 (30%), Positives = 240/446 (53%), Gaps = 17/446 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    + GC++NVY+S  M + F   GYE V   + AD+ V+NTC +   + +K    + 
Sbjct: 2   KVAFATLGCRVNVYESEAMAEKFIKGGYEVVQFDEVADVYVVNTCTVTNMSDKKSRQMIS 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA-R 144
           R +       ++  + ++   GC  Q   E++ R    V+V++G +    +   + RA  
Sbjct: 62  RAK-------RKNPESVIAAVGCYTQIAPEKV-REIGDVDVILGTRNKGDIVYWVNRAKE 113

Query: 145 FGKRVVDTDYSVEDK-FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            GK +V+ +  +++K FE L+I +     +    AFL IQ+GC+ FC++C++P+ RG   
Sbjct: 114 EGKTIVEVNDVLKNKQFEELNIEEY----QDKTRAFLKIQDGCNNFCSYCLIPFARGAVC 169

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           S++   ++DE +KL ++G  E+ L G ++++  G  L+G       +L ++ EI+G+ R+
Sbjct: 170 SKNPETIIDEVKKLSEHGFKEVILSGIDISS-YGVDLEGN-WNLLKVLKAIDEIEGINRV 227

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R  +  P    + +IK  G L  L P+ HL +QSG +  LK MNR++T  E+R II  +R
Sbjct: 228 RIGSIGPEFFDEDIIKEIGSLKKLCPHFHLSLQSGCNSTLKRMNRKYTTEEFRDIIVLLR 287

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
               DI+I++D IVGFPGET ++F  T + + +I  ++   FKYSPR GT    M  QVD
Sbjct: 288 KYVKDISITTDIIVGFPGETKEEFEETYNYLKEIKLSKMHIFKYSPRTGTRAEKMENQVD 347

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKH-GKEKGKLVGRSPWLQSVVLNS 442
            N+K ER   L     + +  F +  +G+ +++L E+    ++    G +P    V+  S
Sbjct: 348 GNIKEERSKLLLALNEKNEKEFMNKFIGEDMKILYEQKCSDKEEYYEGYTPNYIKVIAKS 407

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
           +    G I+  ++ + K     GE++
Sbjct: 408 REDISGKILNTKLIETKEEYTIGEII 433


>gi|315225262|ref|ZP_07867079.1| MiaB family RNA modification enzyme [Capnocytophaga ochracea F0287]
 gi|314944945|gb|EFS96977.1| MiaB family RNA modification enzyme [Capnocytophaga ochracea F0287]
          Length = 433

 Score =  371 bits (954), Expect = e-101,   Method: Composition-based stats.
 Identities = 131/458 (28%), Positives = 213/458 (46%), Gaps = 33/458 (7%)

Query: 17  IVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA 76
           +  + I      V + GC  NVYDS  +     + G E V+     +++V+NTC     A
Sbjct: 1   MRTRSIKKNTINVVTLGCSKNVYDSEVLMGQLKAGGKEVVH-EQKGNIVVINTCGFINNA 59

Query: 77  AEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL 136
            E+  + +      K +    G    V V GC+++    ++ +  P V+   G       
Sbjct: 60  KEESINTILDYVQQKEA----GLVDKVFVMGCLSERYKPDLEKEIPDVDQYFGTSEL--- 112

Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
           P LL       +V+  DY  E   ERL+     Y       A+L I EGCD+ C+FC +P
Sbjct: 113 PALL-------KVLGADYKHELIGERLTTTPKNY-------AYLKISEGCDRPCSFCAIP 158

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256
             RG  +S  +  +V EA KL   GV E+ L+ Q++  + G  L  +K   +DLL +L +
Sbjct: 159 LMRGAHLSTPIEALVTEAEKLAAKGVKELILIAQDIT-YYGLDLY-KKRALADLLSALVK 216

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           ++G+  +R   + P      +++       +  YL +P+Q  SD IL SM R  T  +  
Sbjct: 217 VEGIEWIRIHYAFPTGFPMDVLEVIKTEPKICNYLDIPLQHISDSILASMKRGTTQAKTT 276

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
           +++ + R   P++AI +  IVG+PGET++DF+   D V ++ + +   F YS    T   
Sbjct: 277 KLLKKFREAIPEMAIRTTLIVGYPGETEEDFQKLKDFVKEMRFDRLGCFTYSHEENTTAY 336

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQ 436
            + + V E VK  R   + +   +     N   VG+    LI++  KE    VGR+ +  
Sbjct: 337 TLEDDVQEEVKLARANEIMEIQSQISWELNQEKVGKSFRCLIDR--KEGNYFVGRTEYDS 394

Query: 437 S-----VVLNSKNH--NIGDIIKVRITDVKISTLYGEL 467
                 V++++K H   IGD   V+I D     LYGE 
Sbjct: 395 PDVDNEVLIDAKKHYVKIGDFTDVKIIDATDYDLYGEP 432


>gi|110803412|ref|YP_699306.1| MiaB-like tRNA modifying enzyme [Clostridium perfringens SM101]
 gi|110683913|gb|ABG87283.1| MiaB-like tRNA modifying enzyme [Clostridium perfringens SM101]
          Length = 434

 Score =  371 bits (954), Expect = e-101,   Method: Composition-based stats.
 Identities = 153/447 (34%), Positives = 242/447 (54%), Gaps = 17/447 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    + GC++N Y+S  M + F  +GYE V+  + AD+ V+NTC +     +K    +G
Sbjct: 2   KVAFATLGCRVNTYESEAMTEKFVREGYEVVDFNEMADVYVVNTCSVTNMGDKKSRQIIG 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR- 144
           R R       ++  + ++ V GC AQ    E+      V+VV+G +    +   + +AR 
Sbjct: 62  RAR-------RQNPEAIIAVVGCYAQIAPTEVSG-IEGVDVVLGSRNKGEIVYYVNKARD 113

Query: 145 FGKRVVDTDYSVEDK-FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            GK+ V     +++K FE L I +          AFL IQ+GC++FC +C++PYTRG   
Sbjct: 114 EGKQQVKVGAVLKNKVFEDLKIEEYN----NKTRAFLKIQDGCNRFCAYCLIPYTRGSVC 169

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           S+   +V+DE R L ++G  EI L G +  A  G  LD EK T  DLL  + +I G+ R+
Sbjct: 170 SKDPKKVLDEIRSLAEHGFKEIILSGIHT-ASYGVDLD-EKVTLVDLLEEIEKIDGIERV 227

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R  +  P   ++ +++    L  L P+ HL +QSG D  LK MNRR+TA EY  I++ +R
Sbjct: 228 RIGSIDPTFFTEDVVRRILALKKLCPHFHLSLQSGCDATLKRMNRRYTAKEYEDIVNLLR 287

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
               D++I++D IVGFPGETD++F+ T + + +I  ++   FKYSPR GT   NM  QVD
Sbjct: 288 DKIEDVSITTDVIVGFPGETDEEFKETYEFLKRIALSKTHIFKYSPRKGTRAENMENQVD 347

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVLNS 442
            N K ER   L +  R  + +F +  +G++I+VL E+  +   G   G +     V   +
Sbjct: 348 GNKKDERSKKLIELNRINEKAFAEKYIGEVIDVLFEEEVELGSGVYTGYTRNYIKVNAKA 407

Query: 443 KNHNIGDIIKVRITDVKISTLYGELVV 469
             +  G I+ V+I   +     GE+V+
Sbjct: 408 DCNVSGKILNVKINSFEGEVAEGEIVL 434


>gi|312898000|ref|ZP_07757409.1| MiaB-like tRNA modifying enzyme [Megasphaera micronuciformis F0359]
 gi|310620925|gb|EFQ04476.1| MiaB-like tRNA modifying enzyme [Megasphaera micronuciformis F0359]
          Length = 438

 Score =  371 bits (954), Expect = e-101,   Method: Composition-based stats.
 Identities = 143/448 (31%), Positives = 230/448 (51%), Gaps = 21/448 (4%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           +P      + GC++N YD+  M  +F + GYE  +    AD+ V+NTC +     +K   
Sbjct: 1   MP-TIAFTTLGCRVNQYDTDSMRGLFAAAGYEEADFSGPADVYVINTCSVTHVGEKKSRQ 59

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            + R +       +   D LV+V GC AQ   + +L   P V+ V+G      + +++E 
Sbjct: 60  IIRRAK-------RNNADGLVIVTGCYAQLSPD-VLSAIPGVDAVIGTNERKCIVQVVES 111

Query: 143 ARFGK--RVVDTDYSVE--DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
            R  +  R V   + +   D+FE + +        R   A L IQEGC+ FC +C++PYT
Sbjct: 112 LRNERSGRTVRAVHDIMGRDEFEEIPLYPSAVEHTR---ADLKIQEGCNNFCAYCIIPYT 168

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258
           RG   SR    V++EA++L   G  EI L G ++ A  G  L  ++ T + +L  L    
Sbjct: 169 RGSLKSRQPDAVIEEAKRLSAAGFKEIVLTGIHLGA-YGMDLP-DRPTLALVLKRLLAET 226

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
            + R+R  +    ++ D L++A      + P+LHLP+QSGSD ILKSM R +T  EY  +
Sbjct: 227 DIARIRMGSIESVEIGDDLVEAINSSSRICPHLHLPMQSGSDEILKSMKRHYTKEEYILL 286

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           I+ +     D+ +S+D I+GFPGETD+ F  TMD + ++ ++   +F YSPR GTP + M
Sbjct: 287 IEDLHKKIKDLTVSTDLILGFPGETDELFDETMDTLKRLKFSHIHAFPYSPREGTPAAQM 346

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSV 438
             QV  +VK +R+  +    +EQ+    D  +G+ + VLIE+   +   + G S   + +
Sbjct: 347 ENQVSSDVKKKRVETVNALSKEQKEEILDGMIGKTVHVLIEEV--KGTTVEGFSEQYERI 404

Query: 439 VLNSKNHNI-GDIIKVRITDVKISTLYG 465
                     G IIK+ +T    + L G
Sbjct: 405 RAEVPTAYTSGRIIKILLTGRDGTILTG 432


>gi|325285391|ref|YP_004261181.1| 30S ribosomal protein S12 methylthiotransferase rimO [Cellulophaga
           lytica DSM 7489]
 gi|324320845|gb|ADY28310.1| Ribosomal protein S12 methylthiotransferase rimO [Cellulophaga
           lytica DSM 7489]
          Length = 433

 Score =  371 bits (954), Expect = e-101,   Method: Composition-based stats.
 Identities = 123/459 (26%), Positives = 218/459 (47%), Gaps = 33/459 (7%)

Query: 17  IVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA 76
           +  + +   +  V + GC  NVYDS  +     + G E  +  +D +++V+NTC   + A
Sbjct: 1   MRTKSLKTNKINVVTLGCSKNVYDSEVLMGQLKANGKEVAH-EEDGNIVVINTCGFIDNA 59

Query: 77  AEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL 136
            E+  + +      K +    G    V V GC+++    ++++  P V+   G       
Sbjct: 60  KEESVNTILDFVQKKEA----GEVDKVFVTGCLSERYKPDLIKEIPNVDEYFGTSQL--- 112

Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
           P LL       + ++ DY  E   ER++     Y       A+L I EGCD+ C+FC +P
Sbjct: 113 PSLL-------KALEADYKHELIGERITTTPKNY-------AYLKIAEGCDRPCSFCAIP 158

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256
             RG   S  +  +V EA KL   GV E+ L+ Q++  + G  L  +K   ++LL +L +
Sbjct: 159 LMRGKHKSTPIEDLVTEAEKLAAKGVKELILIAQDLT-YYGLDLY-KKRNLAELLEALVK 216

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           ++G+  +R   + P      ++        +  YL +P+Q  SD ILKSM R  T  +  
Sbjct: 217 VEGIEWIRLHYAFPTGFPMDVLDLMNKEPKICNYLDIPLQHISDSILKSMRRGTTQAKTT 276

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
           +++   R+  P++ I +  IVG+PGET++DF      V  + + +   F YS    T   
Sbjct: 277 KLLQDFRATVPNMTIRTTLIVGYPGETEEDFETLKQWVTDMRFERLGCFTYSHEENTHAY 336

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS---- 432
           N+ + V E VK +R   + +   +     N   +G+  + +I++  KE    VGR+    
Sbjct: 337 NLEDNVPEEVKQDRANQIMEIQSQISWELNQEKIGETFKCIIDR--KEGNYFVGRTEFDS 394

Query: 433 PWLQS-VVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468
           P + + V++++  H +  G+   ++IT+     LYGE V
Sbjct: 395 PDVDNEVLIDATKHYLKQGEYASIKITEAADFDLYGEPV 433


>gi|150390794|ref|YP_001320843.1| RNA modification protein [Alkaliphilus metalliredigens QYMF]
 gi|149950656|gb|ABR49184.1| RNA modification enzyme, MiaB family [Alkaliphilus metalliredigens
           QYMF]
          Length = 433

 Score =  371 bits (954), Expect = e-100,   Method: Composition-based stats.
 Identities = 148/446 (33%), Positives = 243/446 (54%), Gaps = 16/446 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +R    + GC++N Y++  M ++F   GY  V   + AD+ V+NTC +     +K   F+
Sbjct: 2   KRVAFHTLGCKVNQYETQAMTELFEGSGYHLVKDTEIADVYVINTCTVTNVGDKKSRQFI 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R +       +   D ++VV GC AQ   E++L     VN+V+G     ++ E++E   
Sbjct: 62  RRAK-------RNNPDGIIVVVGCYAQTAPEKVLD-IEGVNIVIGTNERNKIVEIVEGCS 113

Query: 145 FGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
              +V V  D     KFE +++ +     +    AFL IQEGC+++C +C++PY RG   
Sbjct: 114 ADSKVNVVDDIMKIKKFEEMTVQEMHGKTR----AFLKIQEGCNQYCAYCIIPYARGPIR 169

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR   +++ E + L++NG  E+ L G +V A  GK L G+     D+L  ++ I+GL R+
Sbjct: 170 SRGKIEIIQEVQTLVNNGFKEVVLTGIHV-ASYGKDL-GDHEGLLDVLKRVNAIEGLERI 227

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R ++  P   SD  + A   L+ +  + HL +QSGSD+ LK MNR++T+  YR+ + RIR
Sbjct: 228 RLSSLEPTLFSDAFLSALSKLEKICDHFHLSLQSGSDKTLKKMNRKYTSQMYRETVKRIR 287

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              P +A+++D IVGFPGETD DF+ + D V+++ +++   FKYSPR GTP +   +Q+D
Sbjct: 288 HYYPLVALTTDIIVGFPGETDVDFQTSYDFVEEMAFSEIHVFKYSPREGTPAAQFDDQID 347

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLNS 442
              K ER   L +     +  +    + Q +EVL+E    +++  L G +     V+L S
Sbjct: 348 GITKHERSEKLIELGDRLKKEYQLQFIDQRMEVLLEGQSGQDQNLLEGFTTNHLKVLLAS 407

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
           K    G +  V+I  +  S L G L+
Sbjct: 408 KQGKEGMLQDVQIDKIMDSGLLGHLL 433


>gi|326802526|ref|YP_004320345.1| ribosomal protein S12 methylthiotransferase rimO [Sphingobacterium
           sp. 21]
 gi|326553290|gb|ADZ81675.1| Ribosomal protein S12 methylthiotransferase rimO [Sphingobacterium
           sp. 21]
          Length = 442

 Score =  371 bits (954), Expect = e-100,   Method: Composition-based stats.
 Identities = 123/465 (26%), Positives = 220/465 (47%), Gaps = 35/465 (7%)

Query: 13  MVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERV---NSMDDADLIVLNT 69
           M ++ ++      R  V + GC  N++DS  +         E V   N++   D++V+NT
Sbjct: 1   MRTKKINNLPSKPRVNVITLGCSKNIHDSEVLMGQLRGNQMEVVHEANNISKNDIVVINT 60

Query: 70  CHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG 129
           C   + A ++    + +   LK      G    V+V GC+++    E+    P V+   G
Sbjct: 61  CGFIDNAKQESIDTILQYSALKEE----GKLEKVIVTGCLSERYKPELETEIPNVDAYFG 116

Query: 130 PQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKF 189
                     L++       V  DY  E   ER+      Y       A+  I EGC++ 
Sbjct: 117 TND-------LQQLLAS---VGADYKHELLGERMLTTPSHY-------AYFKIAEGCNRP 159

Query: 190 CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSD 249
           C+FC +P  RG  IS+ +  +V EA+ L  NG  E+ L+ Q++  + G  L G++   +D
Sbjct: 160 CSFCAIPLMRGKHISKPIEDLVSEAKHLAKNGTKELILIAQDLT-YYGLDLYGKR-NLAD 217

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
           LL +LS+++G+  +R   ++P      ++    +   +  YL +P+Q  +D +LKSM R 
Sbjct: 218 LLRNLSDVEGIEWIRLQYAYPSGFPMDVLDVMNERQNICNYLDMPLQHIADNMLKSMRRG 277

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369
            T  +   +++ IR   P+IA+ +  I G+PGET+ DF   M+ V++  + +   F YS 
Sbjct: 278 ITKQKTIDLVNAIRDKVPNIALRTTLICGYPGETEQDFAEMMEWVERTRFDRLGCFTYSH 337

Query: 370 RLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV 429
              T   ++++ V +  K  R+  + +  +      N   VG   +VLI++   E+G  +
Sbjct: 338 EEKTHAFSLVDDVPQEEKESRVEQIMEIQQGISYEINQEKVGNTYKVLIDRV--EEGYFI 395

Query: 430 GRS----PWLQSVVLNSKNHN---IGDIIKVRITDVKISTLYGEL 467
           GR+    P + + VL + N+N   +G  + V I   +   LYG +
Sbjct: 396 GRTEYDSPEVDNEVLIAANNNYAAVGRFVDVHIDRAEDFDLYGTV 440


>gi|323704197|ref|ZP_08115776.1| RNA modification enzyme, MiaB family [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323536263|gb|EGB26035.1| RNA modification enzyme, MiaB family [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 467

 Score =  371 bits (954), Expect = e-100,   Method: Composition-based stats.
 Identities = 140/447 (31%), Positives = 238/447 (53%), Gaps = 17/447 (3%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
            +     S GC++N Y++  M ++F S GY+ V   + AD+ V+NTC +  +   K    
Sbjct: 20  KKTVSFFSLGCKVNQYETEAMAEIFKSLGYDVVGFDEYADVYVINTCTVTGRGDMKSRQE 79

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           + + +       K   D +V V GC +Q    E+L   P VNVV+G +    + +L+E+A
Sbjct: 80  IRKAK-------KINPDSVVAVVGCYSQVASNEVLN-IPEVNVVLGTKNKGEIVKLVEKA 131

Query: 144 RFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
               +V    D   + KFE L I      ++    A+L IQ+GC+++CT+C++PY RG  
Sbjct: 132 ANANKVNAVEDIFKDRKFEELKIS----AQEGHTRAYLKIQDGCNQYCTYCIIPYARGPI 187

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR  + + DE ++L DNG  E+ L G +V ++   G D E     D++  + EI+G+ R
Sbjct: 188 RSRKPNDIFDEVKRLRDNGYKEVVLTGIHVASY---GKDLENVDLLDIIKMIHEIEGIER 244

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R ++  P  +++  ++    L     + H+ +QSGSD +LK M R++T  EY++I++R+
Sbjct: 245 IRLSSIEPTFLTEDFVREVSLLPKFCRHYHISLQSGSDSVLKRMGRKYTTSEYKRIVERV 304

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R    D+AI++D +VGFPGET+ +F  T +    I +++   FKYS R GT  ++  +Q+
Sbjct: 305 RKYIEDVAITTDVMVGFPGETEREFNETYEFAKDIEFSKMHVFKYSRRAGTKAADYPDQI 364

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRSPWLQSVVLN 441
             +VK ER   L K   E ++ F    +G  + VL E+  KE    + G +     V + 
Sbjct: 365 KNSVKEERSKILIKLSEECELKFYRKFLGSTLNVLFEQRTKELNDYVEGLTDNYIRVAVK 424

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
           S  +    I+ V++ D+K     G +V
Sbjct: 425 SDLNIKNKILPVKLIDLKKDFAIGNIV 451


>gi|150016098|ref|YP_001308352.1| MiaB-like tRNA modifying enzyme YliG [Clostridium beijerinckii
           NCIMB 8052]
 gi|238065361|sp|A6LSR6|RIMO_CLOB8 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|149902563|gb|ABR33396.1| MiaB-like tRNA modifying enzyme YliG [Clostridium beijerinckii
           NCIMB 8052]
          Length = 465

 Score =  371 bits (954), Expect = e-100,   Method: Composition-based stats.
 Identities = 136/469 (28%), Positives = 234/469 (49%), Gaps = 22/469 (4%)

Query: 8   IGVAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVL 67
           I +A    Q  ++     +  + S GC  N  DS  +      + YE  N+  +AD+I++
Sbjct: 6   IEIAKNREQYNEEASSKYKVGMVSLGCDKNRVDSEIILGKMSDE-YEITNNPKNADIIIV 64

Query: 68  NTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVV 127
           NTC   E A ++    +  + N K +        L++  GC+ Q  GEE+    P ++++
Sbjct: 65  NTCGFIESAKQESIDTILEMANYKINYK----CKLLIATGCLTQRYGEELKTLIPEIDIM 120

Query: 128 VGPQTYYRLPELLERARFGKRVVDT--DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEG 185
           +G   Y ++ E++     G ++     +YS E+  E   I+       +  +A++ I EG
Sbjct: 121 LGVNDYNKINEIITEFIDGNKLATELLNYSDENINEGKRII-----TTQRESAYIRIAEG 175

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C+ FCT+C++P  RG   SR +  +++EAR L ++GV EI L+ Q+     G  + G+K 
Sbjct: 176 CNNFCTYCIIPKIRGKFRSRKMENIINEARDLSESGVKEIILIAQDTT-LYGSDIYGKK- 233

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
               LL  LS+I+G+  +R    +P ++ D LI      + ++ YL +P+Q  SD+ILK 
Sbjct: 234 NLHVLLKELSKIEGIEWIRVLYCYPEEIYDELINEIACNEKVVKYLDIPIQHISDKILKL 293

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           M R+ +  +    I  +R   P+I I + FIVGFP ETD+DF   +D + +    +  +F
Sbjct: 294 MGRKTSKKDIINKIQILRERVPEIVIRTTFIVGFPNETDEDFNEIIDFLKEYKLEKVGAF 353

Query: 366 KYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK 425
            YS    TP + M  Q+DE +K +R   L    +      N   +G++ ++L+E +  + 
Sbjct: 354 TYSQEEDTPAAKMDGQIDEEIKEKREEDLMLLQKNISEEINKLKIGKLYDILVEGYNGK- 412

Query: 426 GKLVGRS----PWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468
               GRS    P + + VL   N  I  G+ +KV+I +     L G +V
Sbjct: 413 -CYYGRSYEMAPDIDANVLFESNAKIENGEFVKVKIVETMDYDLVGVVV 460


>gi|159901008|ref|YP_001547255.1| MiaB-like tRNA modifying enzyme YliG [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|238066313|sp|A9AZS3|RIMO_HERA2 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|159894047|gb|ABX07127.1| MiaB-like tRNA modifying enzyme YliG [Herpetosiphon aurantiacus
           ATCC 23779]
          Length = 469

 Score =  371 bits (954), Expect = e-100,   Method: Composition-based stats.
 Identities = 116/475 (24%), Positives = 217/475 (45%), Gaps = 39/475 (8%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +F + + GC  N  DS  M  +   +G+  V+S D AD++++NTC     A E+    L 
Sbjct: 2   KFHIITLGCPKNTVDSEGMHGILTREGHTAVDSSDGADVVIVNTCSFINAAREETVGVLQ 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            + N K           ++ AGC+A++ G+ +  R P ++  +  + + R+  ++     
Sbjct: 62  ELANNKA------PGQKLIAAGCMAESHGDVLRSRVPKLDATLSTKEWMRIGSVVAGGVA 115

Query: 146 GKRVVDTDYSVEDKFERLSIVDG------------------------GYNRKRGVTAFLT 181
             +       +           G                            KRG +A+L 
Sbjct: 116 PSKTTGFGIPLMGGAPSAMPSTGLNLSLTPAATGDSLGAYGDWRTTAITRNKRGPSAYLK 175

Query: 182 IQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD 241
           I +GC+  C FC +P  +G   S+++  ++ EAR+L++ GV EI L+ Q++    G+ L 
Sbjct: 176 ISDGCNLRCAFCTIPSFKGDMRSKAVGSILGEARELVEAGVQEIILVAQHLT-DYGRDLG 234

Query: 242 GEKCTFSDLLYSLSE-IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300
            ++     LL  L+  +     +R   ++P+ ++  L++    L  L  Y+ +P+Q    
Sbjct: 235 MKQNGLGVLLEELAAVVPADRWIRLMYAYPQSVTPDLVETMARLPQLCHYVDMPLQHAHP 294

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
             L+ M R     + + I++ +R   PD+++ + FIVG+PGET D+F+A ++ ++++ + 
Sbjct: 295 DTLRRMRRPPDTDKTKAIVNSLRQAMPDLSLRTTFIVGYPGETRDEFKALLEFLEEMQFD 354

Query: 361 QAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
           +   F+YS   GT    + +QV E VK  R        +    +     VGQ ++VL+E 
Sbjct: 355 RVGMFRYSLEPGTVAGELPDQVAERVKERRWNEAMAVQQVISRARTARFVGQTMKVLVEG 414

Query: 421 HGKEKGK---LVGRS----PWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            G +      +VGRS    P +  +V      ++G   K+ I       L+GE+V
Sbjct: 415 TGTDDDGRAIVVGRSYRDAPEVDGLVFGYGAADVGQFAKIAINKTTDYDLWGEIV 469


>gi|270308549|ref|YP_003330607.1| tRNA I(6) A37 thitransferase miaB family [Dehalococcoides sp. VS]
 gi|270154441|gb|ACZ62279.1| tRNA I(6) A37 thitransferase miaB family [Dehalococcoides sp. VS]
          Length = 418

 Score =  371 bits (954), Expect = e-100,   Method: Composition-based stats.
 Identities = 150/443 (33%), Positives = 234/443 (52%), Gaps = 34/443 (7%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           +++ + GCQMN  +S R+  +F   GY   +  +DA+L+++N+C +RE A  KV + L  
Sbjct: 4   YYLWTIGCQMNQAESERLGRLFELWGYSPADKAEDAELVLVNSCVVREHAENKVINRLHL 63

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           +R LK+        L + + GC+   +   I ++ P ++ + GP +     E+       
Sbjct: 64  LRKLKDK----NSRLKIALTGCLVGQDISSIRKKFPFIDYIFGPGSIPDWHEI------- 112

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
                                     K  V+A +TI +GCD FCT+CVVPY RG E SR+
Sbjct: 113 ------------------PQGFILPLKPPVSASVTIMQGCDNFCTYCVVPYRRGREKSRT 154

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
           ++++  EA +L+  G  E+ LLGQNV++  G  L  EK   +DLL++L +I GL+R+R+ 
Sbjct: 155 IAEIYCEAAELVRRGSREVVLLGQNVDS-YGHDLP-EKPCLADLLHALHDIPGLLRIRFL 212

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
           TSHP+D+S  LI A   L  +   L LPVQ+G+D IL +M R +T+ +YR+++ R++   
Sbjct: 213 TSHPKDISQKLIDAMASLPKVCHSLSLPVQAGADTILAAMRRGYTSEQYRELVGRLKIAM 272

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN-MLEQVDEN 385
           PDI++ +D IVGFP ET + F  +  L+  IGY       YSPR  T  +  M + V   
Sbjct: 273 PDISLQTDLIVGFPSETAEQFDQSYKLMSDIGYDAIHVAAYSPRPQTVAARDMADNVPVA 332

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445
            K  RL  ++   +      N A V    EVL+E  G++K K  GR+   + V L S   
Sbjct: 333 EKKRRLKLIEDLQKGTVSKANAALVDTFAEVLVE--GRQKNKWQGRTLGGKLVFLESDQP 390

Query: 446 NIGDIIKVRITDVKISTLYGELV 468
             G +I V+I      +L  +LV
Sbjct: 391 LEGCLISVKIFKASPWSLQAKLV 413


>gi|254519172|ref|ZP_05131228.1| conserved hypothetical protein [Clostridium sp. 7_2_43FAA]
 gi|226912921|gb|EEH98122.1| conserved hypothetical protein [Clostridium sp. 7_2_43FAA]
          Length = 445

 Score =  371 bits (954), Expect = e-100,   Method: Composition-based stats.
 Identities = 132/449 (29%), Positives = 232/449 (51%), Gaps = 21/449 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +  + S GC  N  DS  +     ++ YE  N   +A++I++NTC   E A ++    + 
Sbjct: 5   KVGMVSLGCDKNRVDSELILGT-INKFYEITNDPKEAEIIIVNTCGFIESAKQESIDTIL 63

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +   KN         +++  GC+AQ  GEE+L   P +++++G   Y +L +L+     
Sbjct: 64  EMAEYKNKYK----CKMLIATGCLAQRYGEELLELMPEIDILMGVNDYMKLHKLILDFIR 119

Query: 146 GKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
           G+R ++ T+YS E+  E + ++          TA++ I EGCD +CT+C++P  RG   S
Sbjct: 120 GERKLLATNYSDENINEGIRLL-----TTDKHTAYVRIAEGCDNYCTYCIIPKIRGKFRS 174

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           RS   +++E   L+ NGV EI L+ Q++  + G  +  ++    +L+  +S + G+  +R
Sbjct: 175 RSKEAILEEVETLVKNGVKEIILIAQDLT-YYGMDIY-KENKLHELVREISNVTGVEWIR 232

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
               +P ++++ LI+       ++ YL LP+Q  S+ ILK M RR        IID++R 
Sbjct: 233 LLYCYPEEITEDLIEEMAMNPKVVKYLDLPIQHISNNILKRMARRTNKETITNIIDKLRE 292

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             P IA+ +  IVGFPGET++DF    + +++        FKYS   GTP ++M  QV+E
Sbjct: 293 RIPGIALRTSLIVGFPGETEEDFNELCEFLEEYKLDNVGVFKYSKEEGTPAADMENQVEE 352

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVL 440
             K +R   L    ++     N   + ++ + +IE  G+     +GRS    P +   +L
Sbjct: 353 ETKEKRQEKLMLVQKKVVEELNKLKISKVYDTIIE--GRRGKYFIGRSSEMAPEIDGNIL 410

Query: 441 --NSKNHNIGDIIKVRITDVKISTLYGEL 467
              ++N   GDI+K++I +     L GE+
Sbjct: 411 VNTTRNLEKGDIVKIKIKEALEYDLVGEI 439


>gi|293977904|ref|YP_003543334.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Candidatus Sulcia
           muelleri DMIN]
 gi|292667835|gb|ADE35470.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Candidatus Sulcia
           muelleri DMIN]
          Length = 455

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 150/463 (32%), Positives = 258/463 (55%), Gaps = 27/463 (5%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           +  ++F++++YGCQMN+ DS  +  +  ++G+ +  ++ +A++I++NTC IR+K+ +K+ 
Sbjct: 1   MRKKKFYIENYGCQMNISDSEIVSSILNNKGFIKTENLKEANIILINTCSIRDKSEKKIL 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             + +I+ +    IK+  D+L+ + GC+A       ++   ++N+VVGP +Y  +P L+ 
Sbjct: 61  LRINQIKFI----IKKNNDILIGILGCMASKFKN--IKEKKLINLVVGPDSYREIPNLIN 114

Query: 142 RARFGK---RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
                K     + T +S  + +  +         ++ +TAF+TI  GCD  CTFCVVP+T
Sbjct: 115 NFFKKKGEYISISTSFSKTETYADIIP----KREEKKITAFVTIMRGCDNMCTFCVVPFT 170

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA--WRGKGL----------DGEKCT 246
           RG E SR    ++ E + L   G  EI LLGQNV++  W G GL          + E   
Sbjct: 171 RGREKSRDPYSIIKECKFLFKKGYKEIILLGQNVDSYLWYGGGLKKKFKIKEIKNEEIIN 230

Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306
           FS LL  ++    L+R+R+ TS+P DMSD ++        +  ++HLPVQSGS+RIL  M
Sbjct: 231 FSKLLELVAISVPLMRIRFCTSNPNDMSDNVLNVIKKYINICKHIHLPVQSGSNRILSLM 290

Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
           NR+HT  +Y  +I++I+ + P+ ++S D I GF  E ++D   T++L++ + Y  ++ F 
Sbjct: 291 NRKHTCEDYILLINKIKKIIPNCSLSCDIITGFCNENENDHNETLNLMNYVKYNFSYMFI 350

Query: 367 YSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK 425
           YS R+GT     +++ V  + K  RL  +    +      N   +G I ++LIE    + 
Sbjct: 351 YSHRIGTYAYKKLIDNVSLSTKKRRLTEIINLQKTHSYYRNRKYIGSIQDILIEGISTKN 410

Query: 426 -GKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
                GR+     V+   KN+ IGD IKV+I +   +TL G++
Sbjct: 411 INFFYGRNSGNDIVIFTKKNYKIGDFIKVKINNCTSATLVGDI 453


>gi|332306183|ref|YP_004434034.1| MiaB-like tRNA modifying enzyme YliG [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332173512|gb|AEE22766.1| MiaB-like tRNA modifying enzyme YliG [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 473

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 127/465 (27%), Positives = 210/465 (45%), Gaps = 34/465 (7%)

Query: 13  MVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHI 72
           + +          R    S GC  N+ DS R+     ++GY+ VN+ +DADL+++NTC  
Sbjct: 21  IAADKPSSLSTGSRIGFVSLGCPKNLVDSERILTQLRTEGYDVVNTYNDADLVIVNTCGF 80

Query: 73  REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT 132
            + A ++    +G                 V+V GC+   + +EI    P V  + GP  
Sbjct: 81  IDTAVQESLDTIGEALAENGK---------VIVTGCLG-IKEDEIREVHPNVLAITGPHA 130

Query: 133 YYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTF 192
           Y  +   +                        + D G        A+L I EGC+  CTF
Sbjct: 131 YEEVVNQVHEHLP---------QPSHNPYLNLVPDIGVKLTPRHYAYLKISEGCNHRCTF 181

Query: 193 CVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--K 244
           C++P  RG  +SR + +++DEA++L + GV E+ ++ Q+ +A+      +    +G   K
Sbjct: 182 CIIPSMRGDLVSRPIGEILDEAQRLKNAGVKELLVISQDTSAYGVDVKNKMGFWNGMPVK 241

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304
              ++L   L E+   VRL Y   +P       + A      ++PYL +P Q  S RILK
Sbjct: 242 TGMTELCEKLGEMGMWVRLHYVYPYPSVDKVMPLMA---SGKVLPYLDIPFQHASPRILK 298

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
            M R   A    + I + R + P++ I S FIVGFPGET++DF+  +D +D+    +   
Sbjct: 299 LMKRPAAAERTMERIKKWRELCPELVIRSTFIVGFPGETEEDFQMLLDFLDEAQLERVGC 358

Query: 365 FKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE 424
           FKYS   G   +++ + V E VK ER     +K ++   +     +G  I+VLI++  +E
Sbjct: 359 FKYSDVEGAKANDLPDPVSEEVKQERFERFMQKQQQISTAKLQRRIGSTIQVLIDEVDEE 418

Query: 425 K--GKLVGRSPWLQS-VVLNSK-NHNIGDIIKVRITDVKISTLYG 465
              G+    +P +   V LN       GD+I   +       L+ 
Sbjct: 419 GAIGRSFADAPEIDGLVYLNGDVTLKPGDLITATVEHADEYDLWA 463


>gi|269798261|ref|YP_003312161.1| MiaB-like tRNA modifying enzyme YliG [Veillonella parvula DSM 2008]
 gi|269094890|gb|ACZ24881.1| MiaB-like tRNA modifying enzyme YliG [Veillonella parvula DSM 2008]
          Length = 448

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 120/456 (26%), Positives = 211/456 (46%), Gaps = 19/456 (4%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + ++    S GC  N+ D+  M  +    GY     + +ADLIV+NTC   EKA  +  +
Sbjct: 1   MGKKLGYVSLGCAKNLVDTEVMLGLLRDNGYSITEDLSEADLIVVNTCTFIEKAKAESIN 60

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +  +   K     +G    ++VAGC++Q   +E+ +  P ++ ++G   + ++   ++ 
Sbjct: 61  TILEVAQYKE----DGACKGLIVAGCLSQQYQDELFQEIPEIDALIGTGAWDQVMVAVDA 116

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
              G R    +       ER+  +          +A++ I EGC+  CTFC++P  RG  
Sbjct: 117 IEHGNRSCIMENITNIYDERMPRIQ----TTPRYSAYVKIAEGCNNGCTFCIIPKVRGAF 172

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR++  +  E  +L   GV E+ L+ Q+  +  G  L+  K   + LL  L+ ++G+  
Sbjct: 173 RSRTIESIKAEVERLAATGVKEVVLIAQDTTS-YGIDLNNGKPLLTTLLKELTTVEGIEW 231

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R    +P   SD L+    +   L  Y+ +P+Q  ++ ILK MNRR    +  +++ +I
Sbjct: 232 IRMLYLYPTFFSDELLDIIVNEPKLCKYVDIPLQHVNNDILKQMNRRDDRNDIERLLKKI 291

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+    I + +  IVGFPGETD+ F    D V +I +     F YS   GTP     +Q+
Sbjct: 292 RNAPTHITLRTSIIVGFPGETDEQFEELCDFVKEIKFDNMGVFTYSQEAGTPAGAREDQI 351

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-------EKGKLVGRSPWL 435
            E VK ER   L           N    G I   ++E+  +        KG+L  ++P +
Sbjct: 352 PEEVKEERYHVLMSIQAAISEENNRDLEGTIDYAMVEEIEEGENNTLLAKGRLKSQAPDV 411

Query: 436 QSVVLN---SKNHNIGDIIKVRITDVKISTLYGELV 468
              +      ++   GDI+KV++       +   +V
Sbjct: 412 DGNMYIEDCGEDIQPGDILKVQVEQGFAYDVVATVV 447


>gi|219854681|ref|YP_002471803.1| hypothetical protein CKR_1338 [Clostridium kluyveri NBRC 12016]
 gi|219568405|dbj|BAH06389.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 451

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 132/450 (29%), Positives = 219/450 (48%), Gaps = 22/450 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +  + S GC  N  DS  +     S  YE V     AD I++NTC   E A ++    + 
Sbjct: 10  KVGLISLGCDKNRVDSEIILGNVKSA-YEIVTDPKLADFIIINTCGFIESAKQESIDTIL 68

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER--A 143
            +   K      G    +VV GC+AQ  G E++   P +++++G   Y +L E +    +
Sbjct: 69  EMSQYKGKYNCRG----IVVTGCLAQRYGIELMELLPEIDIMLGVNDYDKLVENINNFIS 124

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
               ++ +  YS  +  E   I+       +  TA+L I EGCD +CT+C++P  RG   
Sbjct: 125 DKQNKIHNCGYSDLNINEGKRIL-----TTKSHTAYLRIAEGCDNYCTYCIIPKIRGKYR 179

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SRS+  ++ E  +L   GV E+ L+ Q+     G  L   K    +L+ S+S+I+G+  +
Sbjct: 180 SRSIENILQECNELSLRGVKEVILIAQDTT-RYGIDLY-NKKMLPELMRSISKIEGIEWI 237

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R    +P ++++ +I      D +  Y+ +P+Q  SD ILK M RR    +  + I+ +R
Sbjct: 238 RLLYCYPEEITEDIIDEIALNDKVCNYIDIPLQHISDNILKLMGRRGRKKDILRNINELR 297

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
               DI+I +  IVGFPGE+++DF+   + ++ I +     FKYS   GT    M +QV 
Sbjct: 298 KKINDISIRTTIIVGFPGESEEDFKELKNFIENIKFDNLGVFKYSREEGTRAYKMKDQVS 357

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVV 439
           E +K  R   L    +    S     +G   +VL+E  GK++G   GR    +P +  V+
Sbjct: 358 EELKTAREGELMMLQKHIIYSMQKYKIGNKYKVLVE--GKKEGVWYGRNYAMAPDIDGVI 415

Query: 440 L--NSKNHNIGDIIKVRITDVKISTLYGEL 467
              + K   +G +I V+IT+     L G +
Sbjct: 416 YIKSKKELKVGTMIDVKITNSVEYDLVGVV 445


>gi|310827655|ref|YP_003960012.1| hypothetical protein ELI_2066 [Eubacterium limosum KIST612]
 gi|308739389|gb|ADO37049.1| hypothetical protein ELI_2066 [Eubacterium limosum KIST612]
          Length = 446

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 125/449 (27%), Positives = 203/449 (45%), Gaps = 15/449 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++  + + GC  N  D+ +M  M    GY        A++IV+NTC   + A E+   ++
Sbjct: 2   KKIHITTLGCDKNTVDAQQMLGMLAENGYTIEPDPARAEVIVVNTCCFIQAAKEESIEYI 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
                 K S    G   +++ AGC+A+   +E+    P V+  +G      + +L++   
Sbjct: 62  LEYAGYKES----GPCEILIAAGCMAERYHKELAEEMPEVDGFLGVGHIDNIIDLIKDIE 117

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G+       +++  +         Y     VTA+L I EGCD  CT+CV+P  RG   S
Sbjct: 118 GGRGREAFSGNIDRPYVEEMP---RYIEDNTVTAYLKISEGCDHHCTYCVIPKIRGRHRS 174

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           RS   +  EA  L   GV E+ ++ Q++    G  L+GE    + LL  LSE      +R
Sbjct: 175 RSPEAIYKEAAYLEKKGVRELIIIAQDIT-QYGNDLEGE-INLAGLLTRLSEDFSFRWIR 232

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
               +P  +++ L+      D L  Y  +P+Q   D+ILK M R        + I  IR 
Sbjct: 233 LLYMYPEGITEELLDVIASHDNLCHYFDIPIQHTEDKILKRMGRPVNKKHLFEQIGLIRE 292

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             PD  + +  I GFPGET++D    +  +  +   +   FKYS   GTP +   +QVDE
Sbjct: 293 KLPDAVLRTAIITGFPGETEEDHEGLLASLRALKINRLGVFKYSQEEGTPAAEFPDQVDE 352

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK---HGKEKGKLVGRSPWLQSVVLN 441
            V   R   +  +        N+A VG+ ++VLIE+    G   G+  G +P +  +V  
Sbjct: 353 AVMERRWNEIYGQQEGITAEANEAFVGRSLDVLIEEMEAPGTYSGRTYGDAPEIDCMVFA 412

Query: 442 SKNHN---IGDIIKVRITDVKISTLYGEL 467
           +       IG+  KV+I       L G++
Sbjct: 413 NSGEEVLDIGNFYKVKIIQTLDYDLIGDV 441


>gi|326791229|ref|YP_004309050.1| RNA modification enzyme, MiaB family [Clostridium lentocellum DSM
           5427]
 gi|326541993|gb|ADZ83852.1| RNA modification enzyme, MiaB family [Clostridium lentocellum DSM
           5427]
          Length = 435

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 143/449 (31%), Positives = 241/449 (53%), Gaps = 20/449 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++    + GC++N YD+  + + F  QGYE V+  + AD+ V+NTC +   +  K    L
Sbjct: 2   RKVAFYTLGCKVNQYDTEAVLEKFKEQGYEVVDFNEYADVYVVNTCTVTHLSDRKCRQML 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
                      K   D ++V  GC AQ   ++I  +   ++++VG      + +L++   
Sbjct: 62  R-------KTKKINSDSILVAMGCYAQIAADKIKDQVEEIDIIVGTNKRNEIVDLVDNFE 114

Query: 145 FGKRV-VDTDYSVED--KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
             KR  ++T  ++ D  +FE L I D G   +     ++ +QEGC+ +C++C++PYTRG 
Sbjct: 115 KEKRQTINTVSNIMDVGEFEELHISDMGERTR----VYVKVQEGCNNYCSYCIIPYTRGK 170

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
             SR   QVV+E  KL+  G  EI L G +V A+   G D        LL  + EI+G+ 
Sbjct: 171 IRSRKEEQVVEEVTKLVGLGFKEIILTGIHVLAY---GKDLGNTDLIQLLKRVHEIEGVE 227

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R ++  P  ++D  I A  ++  +  + HL +QSGS+ ILK MNR++TA EY+  ++R
Sbjct: 228 RIRMSSIEPVAITDEFIYALKEMPKVCHHFHLSLQSGSETILKRMNRKYTAVEYKASVER 287

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R++ PD+AI++D IVGFPGET+++F  T++ V  +  AQ   F +SPR GTP + M  Q
Sbjct: 288 LRTLWPDVAITTDVIVGFPGETEEEFLETVEFVKDVHLAQIHIFPFSPREGTPAAKMRAQ 347

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           V   +K  R   L +  +  ++++ +  + + +EVL EKH   + ++ G +     V + 
Sbjct: 348 VAPEIKEHRAKVLSEVEKTLRLAYMEQFIDKELEVLFEKH--HENEVTGYTSNYLKVQVL 405

Query: 442 SKNHNIGDIIKVRITDV-KISTLYGELVV 469
                   I KVRI  +     L G ++ 
Sbjct: 406 GNETIENTIQKVRIDAIKDEHLLVGHVIT 434


>gi|238055328|sp|B0RR62|RIMO_XANCB RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
          Length = 457

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 130/458 (28%), Positives = 211/458 (46%), Gaps = 39/458 (8%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC   + DS R+      +GY+ V S D AD++V+NTC   + A  +    +G
Sbjct: 7   KVGFVSLGCPKALVDSERILTQLRVEGYDIVPSYDAADVVVVNTCGFIDSAVTESLDAIG 66

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                         +  V+V GC+ +   E+I    P V  V GPQ Y  + E +  A  
Sbjct: 67  EA---------MNANGKVIVTGCLGKR-PEQIREAYPQVLAVSGPQDYQSVMEAVHAALP 116

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            +          D F  L + D G        A+L I EGC+  C+FC++P  RG   SR
Sbjct: 117 PR---------HDPFVDL-VPDYGIKLTPRHYAYLKISEGCNHRCSFCIIPSMRGDLASR 166

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSD---------LLYSLSE 256
            + +V+ EA +L+  GV E+ ++ Q+ +A  G  L   +  + D         L   LSE
Sbjct: 167 PVDEVLREAERLVRGGVKELLVVSQDTSA-YGVDLKYAERPWRDRMYQTRMKALCEGLSE 225

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           +    RL Y   +P       + A G    L+PYL +P Q  S RILK M R     +  
Sbjct: 226 LGVWTRLHYVYPYPHVDDVIPLMAEG---KLLPYLDIPFQHASPRILKLMKRPGAVEKTL 282

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
           + + R +++ P+I + S FIVGFPGETD +F A ++ +D+    +  +F YSP  G   +
Sbjct: 283 ERVQRWKAMCPEITVRSTFIVGFPGETDAEFEALLEFLDQAQLDRVGAFAYSPVEGASAN 342

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE--KHGKEKGKLVGRSPW 434
            + + V E +K ERL     +  E   +  +A +G + + L++  +      +    +P 
Sbjct: 343 ALPDPVPEELKQERLARFMARQAEISAARLEAKIGTVQQCLVDLIEDDIAVARSRADAPE 402

Query: 435 LQS-VVLNSKNHN---IGDIIKVRITDVKISTLYGELV 468
           +   V + +       +GD++ V ITD     L+G+ +
Sbjct: 403 IDGLVHIQNGGELKLKVGDLVDVEITDSDEHDLFGDAL 440


>gi|257066655|ref|YP_003152911.1| RNA modification enzyme, MiaB family [Anaerococcus prevotii DSM
           20548]
 gi|256798535|gb|ACV29190.1| RNA modification enzyme, MiaB family [Anaerococcus prevotii DSM
           20548]
          Length = 431

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 139/447 (31%), Positives = 238/447 (53%), Gaps = 23/447 (5%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           +   F + + GC++N Y+S  +E++F ++GYE+  +  +AD+ V+NTC +   +  K   
Sbjct: 1   MKNTFNIITLGCKVNQYESEAVEEIFQAKGYEKKQN--NADIYVINTCTVTNMSDRKSRQ 58

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            + R R       ++  + ++ V GC +Q + EE+      V+VV+G +    + +L E 
Sbjct: 59  MISRAR-------RDNPEAVIAVMGCYSQVKPEEVAA-IEGVDVVLGSRNKEEVVDLCEN 110

Query: 143 ARFGKRVVD--TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
               K+V+D    +S     E L I     N++    A++ IQ+GC+ +C++C++PY RG
Sbjct: 111 VLQNKKVIDKVLSFSETKTIEELEIS----NQEAMTRAYMKIQDGCNMYCSYCLIPYARG 166

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
              SR +  +  EA++L  NG  EI L G +V A  GK L     +  D++  +S+  G+
Sbjct: 167 NIASRDMDSIKKEAKRLAQNGYKEIVLTGIHV-ASYGKDL-RNGTSLIDVIEEVSKTDGI 224

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R ++  PR ++   ++     +    + HL +QSGSD ILK+MNR++    +++ +D
Sbjct: 225 ERIRLSSMEPRHITRDFLERMKATEKACDHFHLSLQSGSDEILKAMNRKYDTKIFKEKVD 284

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
            IR V P+  +++D IVGFP ET+ +   T D V +I +A+   FKYS R GT  ++M  
Sbjct: 285 LIREVFPNAGLTTDIIVGFPTETEKNHEETKDFVKEIKFAKTHLFKYSKRDGTKAASMKP 344

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440
           +V+ N+K ERL  L+      +++F    +G+ + VL E     +G   G S     V +
Sbjct: 345 EVNGNIKKERLKELEAIEEVNRLNFLKNQIGKTLSVLFESKSDMEGYKSGYSTNYLRVNV 404

Query: 441 NSKNHNIGD--IIKVRITDVKISTLYG 465
                 IGD  I  V IT++K   L G
Sbjct: 405 KDD---IGDNEIRDVLITEIKNDELIG 428


>gi|299769699|ref|YP_003731725.1| ribosomal protein S12 methylthiotransferase [Acinetobacter sp. DR1]
 gi|298699787|gb|ADI90352.1| ribosomal protein S12 methylthiotransferase [Acinetobacter sp. DR1]
          Length = 447

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 125/459 (27%), Positives = 207/459 (45%), Gaps = 37/459 (8%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC   + DS R+     ++GY+  +  D ADL+V+NTC   E A ++    +G
Sbjct: 5   KVGFVSLGCPKALVDSERILTQLKTEGYQVASDYDGADLVVVNTCGFIESAVQESLDAIG 64

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                         +  V+V GC+   + ++I +  P V  V G   Y  + E +     
Sbjct: 65  EA---------MSENGRVIVTGCLG-KDEDKIRQMHPNVLKVTGAAAYQDVMEAVHEY-- 112

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                      +       + + G        A+L I EGC+  CTFC++P  RG  +SR
Sbjct: 113 ------VPAPPKHNPFIDLVPEQGIRLTPKHYAYLKISEGCNHRCTFCIIPSMRGDLVSR 166

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYSLSEI 257
            +  V++EA  L   GV EI ++ Q+ +A+      +    +G+  K  F D+  +L ++
Sbjct: 167 PVGSVLEEAAALKRAGVKEILVISQDTSAYGVDTKYKLDFWNGQPVKTKFFDMCEALGQL 226

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
              VRL Y   +P   +   + A G    ++PYL +P Q  S R+LK M R   +    +
Sbjct: 227 GIWVRLHYVYPYPHVDAVIDLMAQG---KILPYLDIPFQHASPRVLKLMKRPAHSENTLE 283

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
            I   R   PD+ I S F+VGFPGET++DF+  +D + +    +   F YSP  G   ++
Sbjct: 284 KIKLWREKCPDLVIRSTFVVGFPGETEEDFQILLDWLVEAQLDRVGCFTYSPVEGATAND 343

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----P 433
           + + V E +K ER     +  ++   +     +GQ + VL++    E    V RS    P
Sbjct: 344 LPDHVPEEIKQERYERFMQVQQQISAAKLQKRIGQTMTVLVDGLEDEYPVAVARSYADAP 403

Query: 434 WLQSVVL----NSKNHNIGDIIKVRITDVKISTLYGELV 468
            +   V     +      GDI++V ITD     L+ +L+
Sbjct: 404 EIDGNVFVEDIDKSTIQPGDILEVEITDADEYDLFAKLI 442


>gi|33591749|ref|NP_879393.1| hypothetical protein BP0545 [Bordetella pertussis Tohama I]
 gi|33594966|ref|NP_882609.1| hypothetical protein BPP0250 [Bordetella parapertussis 12822]
 gi|81424079|sp|Q7VS95|RIMO_BORPE RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|81425780|sp|Q7W1U6|RIMO_BORPA RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|33565042|emb|CAE39991.1| conserved hypothetical protein [Bordetella parapertussis]
 gi|33571392|emb|CAE44873.1| conserved hypothetical protein [Bordetella pertussis Tohama I]
 gi|332381166|gb|AEE66013.1| hypothetical protein BPTD_0554 [Bordetella pertussis CS]
          Length = 439

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 127/460 (27%), Positives = 209/460 (45%), Gaps = 33/460 (7%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           +   +    S GC   + DS R+     ++GYE     +DAD++V+NTC   + A  +  
Sbjct: 1   MSSPKVGFVSLGCPKALVDSERILTQLRTEGYEVTPEYNDADVVVVNTCGFIDSAKAESL 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             +G              +  V+V GC+   E   I +  P V  V GPQ Y  +   + 
Sbjct: 61  EAIGEA---------IAENGKVIVTGCMGVEE-SVIRQVHPSVLAVTGPQQYEEVVRAVH 110

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
                ++  +    +        +   G        A+L I EGC+  C+FC++P  RG 
Sbjct: 111 GVAPPRQDHNPYLDL--------VPPQGVKLTPRHYAYLKISEGCNHRCSFCIIPSMRGD 162

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYS 253
            +SR +  V+ EA +L+  GV E+ ++ Q+ +A+      R    +G   K   ++L  +
Sbjct: 163 LVSRPVGDVLSEAERLVRAGVKELLVISQDTSAYGVDIKYRSGFWNGRPVKTRMTELCAA 222

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
           LSE+    RL Y   +P      +I    D   ++PYL +P Q  S RIL++M R     
Sbjct: 223 LSELGVWTRLHYVYPYPHVD--EVIGLMAD-GKVLPYLDIPFQHASPRILRAMKRPAFED 279

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
           +    I R R   PD+ + S FIVGFPGET++DF+  +D + +    +   F+YSP  G 
Sbjct: 280 KTLARIKRWREECPDLTLRSTFIVGFPGETEEDFQYLLDWMSEAQLDRVGCFQYSPVEGA 339

Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGR 431
           P + +   V + VK ER     +  +    +     VG+ I+VLI+   +E   G+    
Sbjct: 340 PANTLDNPVPDEVKQERWERFMEHQQAISTARLSTRVGREIDVLIDSVDEEGAVGRSSAD 399

Query: 432 SPWLQSVVLNSKN--HNIGDIIKVRITDVKISTLYGELVV 469
           +P +   V          GD+++VR+TD     L+GE + 
Sbjct: 400 APEIDGCVYVDSEQPLKAGDMVRVRVTDSDEYDLWGERIA 439


>gi|160915875|ref|ZP_02078083.1| hypothetical protein EUBDOL_01897 [Eubacterium dolichum DSM 3991]
 gi|158432351|gb|EDP10640.1| hypothetical protein EUBDOL_01897 [Eubacterium dolichum DSM 3991]
          Length = 433

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 133/447 (29%), Positives = 213/447 (47%), Gaps = 26/447 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC  N+ DS +M  M  S  +E V+    A+ I++NTC     A E+  + + 
Sbjct: 2   KVGFVSLGCSKNLVDSEKMMGMLVSGQHELVSDPAQAEAIIINTCGFINSAKEEAIATIF 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           ++   K  + K      ++V GC+AQ   E +    P ++ V+  + Y  L E+L+    
Sbjct: 62  KMAEYKKDKCK-----RLIVVGCLAQRYKETLEEEIPEIDAVISIREYPHLHEILKELLD 116

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
              +V  D                    R  TA+L I EGC   CT+C +P  RG  +S 
Sbjct: 117 EHDLVSYDK------------CERKVSSRPWTAYLKIAEGCSNRCTYCAIPLIRGDNVSF 164

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            +  +V EA++L   GV E+ L+ Q+     G    G K +  +LL  L EI+G   +R 
Sbjct: 165 PMEDLVKEAKQLAQRGVKELVLIAQDTT-KYGLDRYG-KLSLLELLKQLHEIEGFHWIRI 222

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
              +P ++ D LI+    L  ++PY  +P+Q  ++R+LK+MNRR T  E  ++ ++IR+ 
Sbjct: 223 LYMYPDEIEDELIEGMARLPKVLPYFDIPMQHANNRMLKAMNRRGTKEEVLRLCEKIRNT 282

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
             +  + + FIVGFP ET D F   M+ V+ + + +  +F YSP   TP  +M + V E 
Sbjct: 283 FENPTLRTTFIVGFPSETHDHFNELMEFVNDVHWDRMGAFPYSPEEDTPAFDMEQDVSEE 342

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS-----PWLQSVVL 440
            K  RL  L  +  E  +      +GQ+IEVL+E      G   GR        +  +V+
Sbjct: 343 EKQRRLEQLMLRQEEISLQNQQKMIGQVIEVLVEDQEGLSGLYRGRGKSSAPDEVDGIVI 402

Query: 441 NSKNHNI--GDIIKVRITDVKISTLYG 465
              +  I  G  +KVR+T+     L G
Sbjct: 403 FKSDRFIPYGSFVKVRVTEAFPHDLKG 429


>gi|261837715|gb|ACX97481.1| ATP-binding protein [Helicobacter pylori 51]
          Length = 437

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 140/445 (31%), Positives = 239/445 (53%), Gaps = 19/445 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + ++++ GC MN  DS  +        Y+  +    ADLI++NTC +REK   K++S +G
Sbjct: 2   KVYIETMGCAMNSRDSEHLLSELSKLDYKETSDPKAADLILINTCSVREKPERKLFSEIG 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           +   +K        +  + V GC A   G +IL+++P V+ V+G +   ++ +++ + + 
Sbjct: 62  QFAKIKK------PNAKIGVCGCTASHMGADILKKAPSVSFVLGARNVSKISQVIHKEKA 115

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            +  +D D S        +     + +K  + + L I  GCDK C +C+VP+TRG EIS 
Sbjct: 116 VEVAIDYDES--------AYAFEFFEKKAQIRSLLNISIGCDKKCAYCIVPHTRGKEISI 167

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE-KCTFSDLLYSLSEIKGLVRLR 264
            +  ++ EA KL  NG  E+ LLGQNVN +  +  +   K  FSDLL  LSEI+G+ R+R
Sbjct: 168 PMDLILKEAEKLASNGTKELMLLGQNVNNYGVRFSNEHAKVDFSDLLDKLSEIQGIERIR 227

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +T+ HP  M+D  ++       +   +H+P+QSGS  +LK M R ++   +   ++R+++
Sbjct: 228 FTSPHPLHMNDAFLERFAKNSKVCKSIHMPLQSGSSAVLKMMRRGYSKEWFLNRVERLKA 287

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           + P++ IS+D IVGFP E+D DF  TM++++K+ +   +SF YSPR  T      E+V  
Sbjct: 288 LVPEVGISTDIIVGFPNESDKDFEDTMEVLEKVHFDTLYSFIYSPRPFTEAGAWKERVPL 347

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV---GRSPWLQSVVLN 441
            V + RL  LQ + +E         VG+   VL+E   +   ++V   GRS   + + + 
Sbjct: 348 EVSSSRLERLQNRHKEILEEKAKLEVGKTHVVLVENRREINNQIVGFEGRSDTGKFIEVA 407

Query: 442 -SKNHNIGDIIKVRITDVKISTLYG 465
             +  N G++++V I       L  
Sbjct: 408 CKEKRNPGELVRVEIISHSKGRLMA 432


>gi|282878890|ref|ZP_06287654.1| MiaB-like protein [Prevotella buccalis ATCC 35310]
 gi|281298889|gb|EFA91294.1| MiaB-like protein [Prevotella buccalis ATCC 35310]
          Length = 432

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 122/450 (27%), Positives = 211/450 (46%), Gaps = 35/450 (7%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDAD--LIVLNTCHIREKAAEKVYSFLGR 86
           + + GC  N+ DS  +   F + GY+  +  +  D  + V+NTC   E A E+  + + +
Sbjct: 8   IITMGCSKNLVDSETLMKQFEANGYDCTHDSEQPDGEIAVINTCGFIETAKEESINTILQ 67

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
               K    KEG    + V GC+++    E+    P V+   G   Y +L   L +A   
Sbjct: 68  FVEAK----KEGRLNKLFVMGCLSERYKNELENEIPEVDKFYGKFNYKQLLADLGKA--- 120

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
                         E  +     +       A++ I EGCD+ C +C +P   G  +SR 
Sbjct: 121 --------------EIKACSGQRHLTTPAHYAYIKIAEGCDRHCAYCAIPIITGKHVSRP 166

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
             +++ E R L+ +G+ E  ++ Q +  + G  LDG++   +DL+  +++I+G+  +R  
Sbjct: 167 KDEILQEVRNLVADGMKEFQIIAQELT-YYGVDLDGKR-HIADLISEMADIEGVEWIRLH 224

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
            ++P      L+    +   +  YL + +Q  SD +L+ M+R     E   +I  IR   
Sbjct: 225 YAYPNQFPLELLDVMNEKQNVCKYLDIALQHISDSVLERMHRHVNKQETMDLICTIREKV 284

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML-EQVDEN 385
           P I + +  +VGFPGET++DF+  +D V    + +  +F YS   GT G+N   + + E+
Sbjct: 285 PGIHLRTTLMVGFPGETEEDFQQLLDFVRWARFERMGAFMYSEEEGTYGANHYADDIPED 344

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVVLN 441
           VK  RL  L    +E       A +G  ++V+I++  KE    +GR    SP +   +L 
Sbjct: 345 VKQRRLDELMAVQQEISAEIEAAKIGSTMKVIIDR--KENDYFIGRSEFCSPEVDPEILI 402

Query: 442 SKNHN---IGDIIKVRITDVKISTLYGELV 468
                   IG   +V+ITD +   LYGE+V
Sbjct: 403 QGGQKAVQIGSFYQVKITDAEEFDLYGEIV 432


>gi|261886073|ref|ZP_06010112.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Campylobacter
           fetus subsp. venerealis str. Azul-94]
          Length = 434

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 160/449 (35%), Positives = 237/449 (52%), Gaps = 20/449 (4%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           V ++ F+++ GC MNV DS  +       + YE  N ++DADLI++NTC +REK   K++
Sbjct: 3   VKKKLFIETLGCAMNVRDSEHIIAELSQKENYEVTNIIEDADLILINTCSVREKPVHKLF 62

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S +G           +     + V GC A   G E+ +R+P V+ V+G +   ++   L 
Sbjct: 63  SEVGTY------EKAKKKGAKIGVCGCTASHLGSEVFKRAPYVDFVLGARNISKITTALN 116

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
             +F    ++ D S     +          R     +F+ I  GCDK CT+C+VP TRG 
Sbjct: 117 TPKFVSVDINHDESEYAFGDF---------RSSPYKSFVNIMIGCDKKCTYCIVPQTRGD 167

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG--EKCTFSDLLYSLSEIKG 259
           EIS     ++ E RK   +G  EI LLGQNVN   GK   G  E   FSDLL  +SE+ G
Sbjct: 168 EISIPKDIILKEVRKAASSGAKEIFLLGQNVN-NYGKRFSGTHENIDFSDLLNLISEVDG 226

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           + R+R+T+ HP  M D  +K       +   +H+P+QSGS+ ILK+M R +T   +    
Sbjct: 227 VERIRFTSPHPMHMDDKFLKEFSTNPKICKSMHMPLQSGSNEILKAMKRGYTKEWFLDRA 286

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            ++R +  D+ IS+D IV FPGE+D DF  TM +V+ I + Q FSFKYS R  TP ++M 
Sbjct: 287 LKLREICSDVTISTDIIVAFPGESDRDFADTMSVVESIKFEQMFSFKYSSRPLTPAASMT 346

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV 439
            QV+ ++ + RL  LQ +  E       A    I EV  E+  +    + GR+     V 
Sbjct: 347 NQVNSDIASRRLSTLQARHTEILDEIVKAQKNSIHEVYFEEL-RANSSVAGRTFNNFLVQ 405

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
            N     +G I+KV+ITD K   LYG+++
Sbjct: 406 TNGSEELLGKILKVKITDPKRMVLYGQII 434


>gi|104783090|ref|YP_609588.1| ribosomal protein S12 methylthiotransferase [Pseudomonas
           entomophila L48]
 gi|123079105|sp|Q1I6D1|RIMO_PSEE4 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|95112077|emb|CAK16804.1| conserved hypothetical protein [Pseudomonas entomophila L48]
          Length = 443

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 130/464 (28%), Positives = 215/464 (46%), Gaps = 34/464 (7%)

Query: 18  VDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA 77
           +       +    S GC   + DS R+      +GYE V + +DAD++V+NTC   + A 
Sbjct: 1   MSTTPATPKVGFVSLGCPKALVDSERILTQLRMEGYEVVPTYEDADVVVVNTCGFIDSAK 60

Query: 78  EKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLP 137
            +    +G         IKE G   V+V GC+   EG  I    P V  V GPQ Y ++ 
Sbjct: 61  AESLEVIGEA-------IKENG--KVIVTGCMGVEEGS-IRDVHPSVLSVTGPQQYEQVV 110

Query: 138 ELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197
             +      ++  +    +        +   G        A+L I EGC+  C+FC++P 
Sbjct: 111 NAVHEVVPPRQDHNPLIDL--------VPPQGVKLTPRHYAYLKISEGCNHSCSFCIIPS 162

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSD 249
            RG  +SR + +V+ EA +L+  GV EI ++ Q+ +A+      +    +G   K    +
Sbjct: 163 MRGKLVSRPVGEVLSEAERLVKAGVKEILVISQDTSAYGVDVKYKTDFWNGRPVKTRMLE 222

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
           L  +LS +   VRL Y   +P       + A G    ++PYL +P Q  S ++LKSM R 
Sbjct: 223 LCEALSSLGAWVRLHYVYPYPNVDDVIPLMAAG---KILPYLDIPFQHASPKVLKSMKRP 279

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369
                    I   R   P++ I S FIVGFPGET++DF+  +D + +    +   F+YSP
Sbjct: 280 AFEDRTLARIKNWREQCPELVIRSTFIVGFPGETEEDFQYLLDWLTEAQLDRVGCFQYSP 339

Query: 370 RLGTPGSNM-LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--G 426
             G P +++ L++V ++VK ER        +    +     +G+ IEVLI++  ++   G
Sbjct: 340 VEGAPANDLGLDEVPDDVKQERWDRFMAHQQAISAARLQQRIGKEIEVLIDEVEEQGSVG 399

Query: 427 KLVGRSPWLQSVVLNSKNH--NIGDIIKVRITDVKISTLYGELV 468
           +    +P +   V    +H    GD ++ RI D     ++ E +
Sbjct: 400 RSFFDAPEIDGSVFIDGDHGFKPGDKVRCRIVDADEYDMWAEPI 443


>gi|325478525|gb|EGC81637.1| tRNA methylthiotransferase YqeV [Anaerococcus prevotii
           ACS-065-V-Col13]
          Length = 431

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 131/446 (29%), Positives = 237/446 (53%), Gaps = 15/446 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           +   F + + GC++N Y+S  +E++F ++GY+     ++AD+ V+NTC +   +  K   
Sbjct: 1   MNNTFNIITLGCKVNQYESEAVEEIFEARGYK--KKEENADIYVINTCTVTNMSDRKSRQ 58

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            + R R       ++  + ++ V GC +Q + EE+  +   V++V+G +    + +L E 
Sbjct: 59  MISRAR-------RDNPEAVIAVMGCYSQVKPEEV-SQIEGVDIVLGSRNKEEVVDLCED 110

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
               K  +D   S+ +      +     N++    A++ IQ+GC+ +C++C++PY RG  
Sbjct: 111 VLQNKGAIDKVLSLSETKTIEDL--EISNQEAMTRAYMKIQDGCNMYCSYCLIPYARGNI 168

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR +  + +EA++L +NG  EI L G +V++  GK L     +  D++  ++   G+ R
Sbjct: 169 SSRDMESIKNEAKRLAENGYKEIVLTGIHVSS-YGKDLK-NGTSLIDVIEEVANTDGIER 226

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R ++  PR ++   ++          + HL +QSGSD ILK+MNR++    +++ +D I
Sbjct: 227 IRLSSMEPRHITREFLERMKATKKACDHFHLSLQSGSDDILKAMNRKYDTKIFKEKVDLI 286

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R V P+  +++D IVGFP ETD++   T + V  I +A+   FKYS R GT  + M  +V
Sbjct: 287 REVFPNAGLTTDIIVGFPTETDENHIETKNFVKDIKFAKTHLFKYSKRDGTKAATMKPEV 346

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
           D N+K ERL  L++  +  +  F +  +G+ + VL E      G   G S     V +  
Sbjct: 347 DGNIKKERLKELEEIEQVNKREFLEKQIGKTLSVLFESKSDMDGYKSGYSTNYLRVNVKD 406

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
           +  +  +I    IT++K   L GELV
Sbjct: 407 EIED-NEIRNCLITEIKNDELVGELV 431


>gi|150015722|ref|YP_001307976.1| MiaB-like tRNA modifying enzyme [Clostridium beijerinckii NCIMB
           8052]
 gi|149902187|gb|ABR33020.1| MiaB-like tRNA modifying enzyme [Clostridium beijerinckii NCIMB
           8052]
          Length = 432

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 138/445 (31%), Positives = 232/445 (52%), Gaps = 18/445 (4%)

Query: 28  FVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRI 87
              + GC++N Y++  M + F  +GYE  +    AD+ V+NTC +   + +K    + R 
Sbjct: 2   AFATLGCRVNHYETEAMAEKFIREGYEVTDFEGFADVYVINTCSVTNMSDKKSRQIISRA 61

Query: 88  RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147
           R       +   + ++   GC +Q   EE+  +   V+VV+G +    +   + +A+  +
Sbjct: 62  R-------RRNENAIIAAVGCYSQVAPEEV-SKIQGVDVVLGTRNKGDIVYYVNKAKDEQ 113

Query: 148 RV--VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           +   +  +     +FE L+I +     +    AFL IQ+GC++FC +C++PYTRG   S+
Sbjct: 114 KPQLMVGEVLKNKQFEELNIEEY----QDKTRAFLKIQDGCNRFCAYCLIPYTRGTTCSK 169

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
              +V+DE + L ++G  EI L G +  A  G  LDG   T   LL  + ++ G+ R+R 
Sbjct: 170 DPQKVLDEIKNLSEHGFKEIILSGIHT-ASYGVDLDGN-VTLITLLEEIEKLDGIERVRI 227

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
            +  P   +D +I+    +  L P  HL +QSG D  LK MNRR+TA EY   ++RIR  
Sbjct: 228 GSIEPSFFTDEVIEKMKKMKKLCPQFHLSLQSGCDATLKRMNRRYTAKEYEDAVNRIREN 287

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
             D +I++D IVGFPGETD++F  T + + +I   +   FK+SPR GT  S+M  Q+D N
Sbjct: 288 LKDASITTDVIVGFPGETDEEFNETYEYLKRIKLTKTHIFKFSPRKGTKASDMPNQIDGN 347

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSPWLQSVVLN-SK 443
           VK +R   L +   + +  F+ + VG+ ++VL+E +   + G   G +     V +    
Sbjct: 348 VKDKRSKALIELNAKNEGDFSKSLVGRELDVLVEQEVSNKPGVFEGYTRNYVKVEIPNGS 407

Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468
              IG II  +I       + G+++
Sbjct: 408 RDMIGKIILCKIMASDAEYVVGKII 432


>gi|227499809|ref|ZP_03929904.1| 2-methylthioadenine synthetase [Anaerococcus tetradius ATCC 35098]
 gi|227218113|gb|EEI83381.1| 2-methylthioadenine synthetase [Anaerococcus tetradius ATCC 35098]
          Length = 431

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 136/446 (30%), Positives = 238/446 (53%), Gaps = 15/446 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + + F + + GC++N Y+S  +E++F S+GY+     D AD+ V+NTC +   +  K   
Sbjct: 1   MNKTFNIITLGCKVNQYESEAVEEIFKSRGYK--KKQDGADIYVINTCTVTNMSDRKSRQ 58

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            + R R       ++  + ++ V GC +Q + +E+L     V++V+G +    + +L E 
Sbjct: 59  MISRAR-------RDNPEAVIAVMGCYSQVKPDEVLA-IEGVDIVLGSRNKEEVVDLCED 110

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
               K  +D   S+ +      +     N++    A++ IQ+GC+ +C++C++PY RG  
Sbjct: 111 VLQNKTAIDRVISLSESKSIEEL--EISNQEDMTRAYMKIQDGCNMYCSYCLIPYARGNI 168

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR +  + +EA +L  NG  EI L G +V A  GK L   K    D++  +++  G+ R
Sbjct: 169 VSRDMESIKEEAIRLAKNGYKEIVLTGIHV-ASYGKDLKNGK-RLIDVIEEVAKTDGIER 226

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R ++  PR ++   ++          + HL +QSGSD ILK+MNR++    Y Q +  I
Sbjct: 227 IRLSSMEPRHITKDFLERMKATRKACDHFHLSLQSGSDEILKAMNRKYDTEIYEQKVKLI 286

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R V P+  I++D IVGFP ET+++ R T + V KI +++   FKYS R GT  ++M  +V
Sbjct: 287 REVFPNAGITTDIIVGFPTETEENHRQTKEFVKKIKFSKTHLFKYSKRDGTKAADMKPEV 346

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
           D NVK +RL  L++  +  + +F    +G+ + VL E      G   G S     V +  
Sbjct: 347 DGNVKRQRLKELEEIEKANRENFLKNQIGKTLSVLFESKSDIDGFKSGYSTNYLRVNVKD 406

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
           +  N  +I  V IT++K   L G+++
Sbjct: 407 EISN-NEIRDVLITEIKDDELVGKVL 431


>gi|257455349|ref|ZP_05620584.1| conserved hypothetical protein [Enhydrobacter aerosaccus SK60]
 gi|257447311|gb|EEV22319.1| conserved hypothetical protein [Enhydrobacter aerosaccus SK60]
          Length = 495

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 130/480 (27%), Positives = 215/480 (44%), Gaps = 40/480 (8%)

Query: 9   GVAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLN 68
             AH ++Q +     P+  FV S GC   + DS R+       GY+  +  D ADL+V+N
Sbjct: 36  QTAHQLAQDIATTKAPKIGFV-SLGCPKALVDSERIITELSRDGYQVASDYDGADLVVVN 94

Query: 69  TCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVV 128
           TC   E A ++    +G                 V+V GC+   + E+I    P V  V 
Sbjct: 95  TCGFIESAVQESLDAIGEAITKNGK---------VIVTGCLG-KDAEKIKTMHPAVLAVT 144

Query: 129 GPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
           G   Y  +   +        V     S     +   I D G        A++ I EGC+ 
Sbjct: 145 GAHAYEEVVNAV-----SHYVPKPAPSKTYDPKIDLINDAGIKLTPKHYAYVKISEGCNH 199

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE----- 243
            CTFC++P  RG  +SR +  ++ EA  L + GV E+ ++ Q+ +A  G  L  +     
Sbjct: 200 RCTFCIIPSFRGDLVSRPIDSIMTEAAALKNAGVKELLIISQDTSA-YGVDLKYKTSFWN 258

Query: 244 ----KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
               K  F D+  +L+ +   VRL Y   +P   +   +      D L+PYL +P Q  S
Sbjct: 259 GMPIKSKFYDMCEALNRLGIWVRLHYIYPYPHVDAVVKLM---SEDKLLPYLDIPFQHAS 315

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
             +LK+M R   +    + I   RS+ PDI I S F+VGFPGET++DF   +D + +   
Sbjct: 316 PNVLKAMKRPAHSENVLERIKTWRSICPDIVIRSTFVVGFPGETEEDFEYLLDWLKEARL 375

Query: 360 AQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419
            +  +F YS   G   +++   V E +K +R   L    ++         VG+ ++VL++
Sbjct: 376 DRVGAFTYSEIEGAAANDLPNPVPEAIKQQRYERLMALQQQISAEKLAEKVGKTLKVLVD 435

Query: 420 KHGKEKGKLVGRS----PWLQS-VVLNSKNH--NIGDIIKVRITDVKISTLY----GELV 468
           +  +E+   + RS    P +   V +++ +    +G+ + V I +     L+    GEL+
Sbjct: 436 EIDEEENIAICRSYADAPEIDGHVYVDNIDASVKVGEFLTVTIDEANEYDLFASFTGELL 495


>gi|159481396|ref|XP_001698765.1| hypothetical protein CHLREDRAFT_81764 [Chlamydomonas reinhardtii]
 gi|158273476|gb|EDO99265.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 542

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 153/466 (32%), Positives = 240/466 (51%), Gaps = 25/466 (5%)

Query: 16  QIVDQCIVP--QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIR 73
           +   + I P  +++F+ ++GCQMN+ DS RM  +  S GY       +AD+++ NTC IR
Sbjct: 87  RPAPEGIAPNGKKYFIHTFGCQMNMADSERMAGVLESVGYVGSEDASEADVLIYNTCSIR 146

Query: 74  EKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTY 133
           EKA +KVYS LG  + ++   +       ++ AG   Q  G+E      +  +   PQ  
Sbjct: 147 EKAEQKVYSALG--KQVRTRGLVPNSTEPIMKAG-GGQNVGQEGELEIGL-KLSASPQFA 202

Query: 134 YRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC 193
            R+ ELL++A   +       +VE+             R+  +TA++ +  GC++ CT+C
Sbjct: 203 NRINELLDQANDAQVCATEQVAVEEDI-------TTPRRESNITAWVNVIYGCNEKCTYC 255

Query: 194 VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG--------EKC 245
           VVPYTRG E SR    +  E   L + G  E+TLLGQNV+A  G+ L G           
Sbjct: 256 VVPYTRGAEQSRRPEDIRREMMALGEAGYKEVTLLGQNVDA-YGRDLPGMAADASGRRAW 314

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
           TF+DLL  + ++ G+ R+R+ TSHPR  +D L++A  +L  L  + H+P Q      L +
Sbjct: 315 TFTDLLRYVHDVPGIERIRFATSHPRYFTDRLVRACSELPKLCEFFHIPFQVRFVWGLVA 374

Query: 306 MNRR-HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
                H      +  DRI    PD +IS D IVGFPGET++ ++ T DLV +IG+ +  +
Sbjct: 375 AGVGAHLPGPISRGPDRIAGYMPDASISGDVIVGFPGETEEQYQRTEDLVREIGFDRVNT 434

Query: 365 FKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-K 423
             YSPR  TP +    QV + +KA+RL  L K + E          G+ +EVL+E    K
Sbjct: 435 AAYSPRPNTPAAEWENQVADLIKADRLNRLNKVVMEVATERAQRFQGRTLEVLVEGPNPK 494

Query: 424 EKGKLVGRSPWLQSVVLNSKNHNI-GDIIKVRITDVKISTLYGELV 468
              +  GR    + V  +     + G ++ VR+ +    +++GE+V
Sbjct: 495 NPAQAFGRIRHNKLVYFDGDGKTLRGQLVMVRVDECNAFSMFGEMV 540


>gi|254784823|ref|YP_003072251.1| ribosomal protein S12 methylthiotransferase [Teredinibacter
           turnerae T7901]
 gi|237686747|gb|ACR14011.1| ribosomal protein S12 methylthiotransferase [Teredinibacter
           turnerae T7901]
          Length = 439

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 126/460 (27%), Positives = 203/460 (44%), Gaps = 35/460 (7%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + Q+    S GC   + DS R+       GY  V S DDADL+V+NTC   + A ++   
Sbjct: 1   MTQKVGFISLGCPKALVDSERILTQLKLDGYSVVPSYDDADLVVVNTCGFIDSAKQESLD 60

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRR-SPIVNVVVGPQTYYRLPELLE 141
            +               +  V+V GC+ + +  EI+R   P V  V GP  Y  +   + 
Sbjct: 61  AISEA---------MSENGKVIVTGCMGKGKDAEIIRESFPNVLSVTGPAAYEEVMGAVH 111

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
                          +       +   G        A+L I EGC+  C+FC++P  RG 
Sbjct: 112 EY--------IPPVRDHNPHVDLVPPQGVKLTPRHYAYLKISEGCNHRCSFCIIPDMRGD 163

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE---------KCTFSDLLY 252
            +SR +  V++EA +L++ G  E+ ++ Q+ +A  G  L            K    +L  
Sbjct: 164 LVSRPIGDVLNEAERLVNAGTRELLVISQDTSA-YGVDLKYRTGFWQGRPVKTRMQELCE 222

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
           +L E+   VRL Y   +P   +   + A G    ++PYL +P Q  S  +LK+M R    
Sbjct: 223 ALGEMGVWVRLHYVYPYPHVDNVIPLMAEG---KILPYLDIPFQHASPTVLKAMQRPAHQ 279

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
            +    I   R + PD+ + S FIVGFPGETD DF   +D ++     +   F+YSP  G
Sbjct: 280 EKTLDRIHAWRKMCPDLTLRSTFIVGFPGETDADFELLLDWLEDAQLDRVGCFQYSPVEG 339

Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVG 430
              + +   V E VK ER        +    +   A +G+ I+VLI++       G+   
Sbjct: 340 AAANALPNPVPEEVKQERWERFMAAQQRISAARLQAKIGKTIDVLIDRSEGVNALGRSFA 399

Query: 431 RSPWLQSVVL--NSKNHNIGDIIKVRITDVKISTLYGELV 468
            +P +  VV+  +S +   G +IK R+T      ++ E +
Sbjct: 400 DAPEIDGVVIVEDSAHLPAGSLIKARVTAADEYDIWAEPL 439


>gi|159897576|ref|YP_001543823.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|229890607|sp|A9AZY8|MIAB_HERA2 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|159890615|gb|ABX03695.1| RNA modification enzyme, MiaB family [Herpetosiphon aurantiacus
           ATCC 23779]
          Length = 438

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 148/448 (33%), Positives = 235/448 (52%), Gaps = 27/448 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R+FV + GCQMNV DS R+E      GY      +DAD IVLN+C +R  A EK+   + 
Sbjct: 5   RYFVWTVGCQMNVSDSERLESALQGVGYTPAEQAEDADFIVLNSCSVRANAEEKIIGKIT 64

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRR-SPIVNVVVGPQTYYRLPELLERAR 144
            I+ +K    +E  D  +V+ GC+     + I ++  P+V+  V P     +  L     
Sbjct: 65  DIQRIK----RERPDTKIVLWGCMVGPNNQSIFKKKLPMVDHFVSPSAVDEVLAL----- 115

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
                 +  Y +++    L + D        V   + I  GC+  C +CV+P  RG E S
Sbjct: 116 ----APNPIYQLDE--PALPVADWQVP---PVNVHVPINYGCNMSCAYCVIPLRRGKERS 166

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R + ++ +E R++   G  EITLLGQ V++  G  L G +   +DLL  L E  GLVRLR
Sbjct: 167 RPMEEIAEEVRRICARGAKEITLLGQIVDS-YGHDLPG-RPDLADLLEYLHETPGLVRLR 224

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           + TSHP  MS+ L+     L  +MP ++LP+Q+G D++LK M R +T  +Y ++I+RIR 
Sbjct: 225 FLTSHPAFMSEKLLHTIARLPKVMPDINLPIQAGDDQLLKVMKRGYTVAKYTKLIERIRE 284

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ--- 381
           + P++++S+D IVG PGET + F  T+++V+ I + +     YS R GT  ++M      
Sbjct: 285 IIPNVSLSTDIIVGHPGETREMFERTLEMVENIRFDKVHIAAYSSRPGTKAADMELDPAL 344

Query: 382 -VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440
            V+   K  R + L++         N+ C+G  +EVL+E+  K  GK  GR    + V  
Sbjct: 345 AVEHGEKQYRRIALERLQERIATERNEECLGHEVEVLVEEFTK--GKWRGRDRNNKLVFF 402

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
            +     G ++ + +T+ +   L G L+
Sbjct: 403 EADGDWYGKVVNIHVTETRPWWLGGNLI 430


>gi|307243292|ref|ZP_07525459.1| MiaB-like protein [Peptostreptococcus stomatis DSM 17678]
 gi|306493310|gb|EFM65296.1| MiaB-like protein [Peptostreptococcus stomatis DSM 17678]
          Length = 431

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 136/445 (30%), Positives = 232/445 (52%), Gaps = 16/445 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++    + GC++N Y++  M +MF   GYE V S D AD+ V+NTC +   +  K   ++
Sbjct: 2   KKVAFYTLGCKVNQYETEAMLEMFEKNGYENVGSEDYADVYVINTCTVTHMSDRKSRQYI 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R++       K+  + ++ V GC +Q   EEIL     VN+V+G      + + +++  
Sbjct: 62  RRVK-------KKNPNSIIAVVGCYSQVSPEEILD-IEDVNLVMGTNDRRTIVDKVDKID 113

Query: 145 FGKRVVDTD-YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
              +V   D      +FE + I       +    AF+ IQ+GCD++C++C++PY RG   
Sbjct: 114 SNSKVSTVDDIMKVREFEEIEISQTNGKTR----AFIKIQDGCDRYCSYCIIPYARGRIR 169

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR    +++E  KL  NG  E+ L G +V A  G+ LD E      ++  +++++G+ R+
Sbjct: 170 SRDRQSIIEEIEKLAANGYKEVVLTGIHV-ASYGRDLD-EDIDILTVIKDVNKVEGIERI 227

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R ++  P   ++  I     +D L+P+ HL +QSG D  LK MNRR+T  +Y++ +D +R
Sbjct: 228 RLSSVEPVLFTEDFIDQISKIDKLVPHYHLSLQSGCDATLKRMNRRYTTEDYKRTVDNLR 287

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           +  P +++++D IVGFPGET+++F  T+  +  +       FKYSPR GTP + M +QVD
Sbjct: 288 ARIPRVSLTTDVIVGFPGETNEEFSQTLAYLKDLKLMHMHVFKYSPRKGTPAAVMEDQVD 347

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
             +K  R   L     +    F D  +   ++VL E+  K+ G   G +     + + S 
Sbjct: 348 PQMKQMRSDSLLALSTKNFKLFADQFINTDLKVLFEEVDKD-GYYEGLTDNYMRIKVRSD 406

Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468
               G I+ VRI ++        LV
Sbjct: 407 LDIRGQILPVRIEEICDDYCIAGLV 431


>gi|223984231|ref|ZP_03634378.1| hypothetical protein HOLDEFILI_01672 [Holdemania filiformis DSM
           12042]
 gi|223963800|gb|EEF68165.1| hypothetical protein HOLDEFILI_01672 [Holdemania filiformis DSM
           12042]
          Length = 460

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 127/457 (27%), Positives = 219/457 (47%), Gaps = 26/457 (5%)

Query: 16  QIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREK 75
           +I ++  +  +  V S GC  N+ DS RM  +    G+E V+ + +A+ I++NTC   E 
Sbjct: 12  KIYEKKGINMKIGVVSLGCCKNLVDSERMMGLLRQSGHEIVSDVHEAEAIIVNTCGFIEP 71

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135
           A E+  + +  +   KN   +      ++VAGC+AQ    ++    P V+  +    Y +
Sbjct: 72  AKEEAINTILEMAEYKNENCR-----KLIVAGCLAQRYKADLEAEMPEVDCFLTISDYPK 126

Query: 136 LPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
           + ++L R   G++V+D               +      +  TA+L I EGCD  C++C +
Sbjct: 127 MGQILTRVL-GEKVLDGYGK-----------NTRLVSTKPWTAYLKIAEGCDNRCSYCAI 174

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
           P  RG  +S  +  +V EA++L   GV E+ ++ Q+  +  G  L G +    DLL  L+
Sbjct: 175 PGIRGGYVSFPIEDLVAEAKQLASEGVKELVVIAQDT-SRYGTDLYGRR-RIWDLLTELN 232

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
            I GL  +R    +P ++ D  +    DL  ++PY  +PVQ GSD++LK MNRR +    
Sbjct: 233 AIDGLHWIRVLYLYPDEIDDEFVTGIKDLKKVIPYFDIPVQHGSDKMLKLMNRRGSVESI 292

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
            + +  IR       + +  IVGFP ET++DF+  +D + ++ + +  +F +S    TP 
Sbjct: 293 LRTVKLIRENYDMPVLRTTMIVGFPQETEEDFQMLIDFIKEVRWDRLGAFTFSNEEDTPA 352

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS--- 432
             M  Q+ + +  ERL  L     +      +A +G+ +EVL+E      G   GR    
Sbjct: 353 YTMDGQISQEIMDERLERLMTVQNQIAQENGEALIGKTLEVLVENQDGLTGYYHGRGIHS 412

Query: 433 --PWLQSVV-LNSKNH-NIGDIIKVRITDVKISTLYG 465
               +  ++   S +H   G    V++T  K   L G
Sbjct: 413 APDGIDGLIKFKSSHHYQPGTFAWVKVTKAKHHDLIG 449


>gi|163859042|ref|YP_001633340.1| ribosomal protein S12 methylthiotransferase [Bordetella petrii DSM
           12804]
 gi|238065294|sp|A9IFP1|RIMO_BORPD RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|163262770|emb|CAP45073.1| conserved hypothetical protein [Bordetella petrii]
          Length = 441

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 133/461 (28%), Positives = 208/461 (45%), Gaps = 33/461 (7%)

Query: 20  QCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEK 79
               P    + S GC   + DS R+     ++GY+   S DDAD++V+NTC   + A  +
Sbjct: 2   ATSKPASIAMISLGCPKALVDSERILTQLRTEGYQVTPSYDDADVVVVNTCGFIDSAKAE 61

Query: 80  VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL 139
               +G              +  V+V GC+   E   I    P V  V GPQ Y ++   
Sbjct: 62  SLEAIGEA---------IAENGKVIVTGCMGVEE-SVIREIHPSVLAVTGPQQYEQVVLE 111

Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           + RA   K         +       +   G        A+L I EGC+  C+FC++P  R
Sbjct: 112 VHRAAPPK--------ADHNPYVDLVPPQGVKLTPRHYAYLKISEGCNHRCSFCIIPSMR 163

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLL 251
           G  +SR +  V+ EA +L+  GV E+ ++ Q+ +A+      R    +G   K   ++L 
Sbjct: 164 GDLVSRPVGDVLSEAERLVKAGVKELLVISQDTSAYGVDLKYRSGFWNGRPIKTRMTELC 223

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
            +LSE+    RL Y   +P       + A G    ++PYL +P Q  S RILK+M R   
Sbjct: 224 AALSELGVWTRLHYVYPYPHVDEVIPLMAQG---KVLPYLDIPFQHASPRILKAMKRPAF 280

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
             +    I R R   PD+ + S FIVGFPGET+ DF+  +D + +    +   F+YSP  
Sbjct: 281 EDKTLARIKRWREECPDLTLRSTFIVGFPGETEADFQYLLDWMSEAQLDRVGCFQYSPVN 340

Query: 372 GTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLV 429
           G P + +   V + VK ER        +    +     VG+ I+VLI++   +   G+  
Sbjct: 341 GAPANELDGAVPDEVKQERWDRFMAHQQAISAARLQTRVGREIDVLIDEVNADGAVGRSS 400

Query: 430 GRSPWLQSVVL--NSKNHNIGDIIKVRITDVKISTLYGELV 468
             +P +   V   N+     GD+ +VRIT      L+G+ V
Sbjct: 401 ADAPEIDGCVYVGNAATLRPGDMARVRITAADEYDLHGDAV 441


>gi|115379590|ref|ZP_01466678.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Stigmatella aurantiaca
           DW4/3-1]
 gi|115363417|gb|EAU62564.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Stigmatella aurantiaca
           DW4/3-1]
          Length = 443

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 169/421 (40%), Positives = 245/421 (58%), Gaps = 17/421 (4%)

Query: 53  YERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQA 112
           Y    + D+ADLI+LNTC IREKA +K+ S LGR R +K          L+ V GCVAQ 
Sbjct: 6   YAPTPTPDNADLIILNTCAIREKAEDKMLSALGRYRPVK-----VSRGALIGVGGCVAQQ 60

Query: 113 EGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNR 172
           E + +L++ P V+ V GP    +LPE++ R    +  V     V+ +       D   +R
Sbjct: 61  EKDRLLKKVPYVDFVFGPDNIGKLPEIITRVSQERERVVETAFVDSEEYVFPRADPETSR 120

Query: 173 KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNV 232
            + VT F+T+ +GCD  C+FCVVP+TRG E+SR+   V+ E   L   G+ E+TL+GQNV
Sbjct: 121 GK-VTEFVTVMKGCDNVCSFCVVPHTRGREVSRAFPDVLTEVADLARVGLREVTLIGQNV 179

Query: 233 NAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLH 292
           N++RG        +F+ LL   +E+ G+ R+R+TTSHP D+SD LI A      + P+ H
Sbjct: 180 NSYRG------GISFAQLLLRTAEVPGIERVRFTTSHPHDLSDELIDAFRTQPKIAPHFH 233

Query: 293 LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352
           LPVQ GSDRILK M R +T  +Y + ++++R+ RP IA+++D IVGFPGET++DF  TM 
Sbjct: 234 LPVQCGSDRILKMMRRDYTVVQYLERLEKLRAARPGIAVTTDIIVGFPGETEEDFEMTMQ 293

Query: 353 LVDKIGYAQAFSFKYSPRLGTPGSNMLEQ---VDENVKAERLLCLQKKLREQQVSFNDAC 409
           L +++ Y   FSF +SPR  T  +   +    V   VK  RL  LQK  R+       + 
Sbjct: 294 LTEQVRYESQFSFIFSPRPKTGAALREKDWGSVPHEVKIARLERLQKVQRKICGEIAVSQ 353

Query: 410 VGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           VG  +EVL+E H K + GK  GRSP  ++V  +  +   G I+KV +     + L G+ +
Sbjct: 354 VGLEVEVLVEGHSKYDAGKRFGRSPENRTVNFDG-DAPAGAIVKVLVDRATPNHLMGKQL 412

Query: 469 V 469
            
Sbjct: 413 A 413


>gi|258645469|ref|ZP_05732938.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Dialister invisus DSM
           15470]
 gi|260402822|gb|EEW96369.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Dialister invisus DSM
           15470]
          Length = 447

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 141/443 (31%), Positives = 233/443 (52%), Gaps = 17/443 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++    + GC++N YDS  M  +F   GY+     ++AD+ V+NTC +      K    +
Sbjct: 11  KKVSFITLGCKVNQYDSDAMRSLFIRNGYKVAKENENADVYVINTCSVTSIGDRKSRQMV 70

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            RIR       +E    ++  AGC AQ   + +  +   V+V+VG Q    + E +E A 
Sbjct: 71  RRIR-------REHPGAVIAAAGCYAQLAPD-VFVQMGDVDVIVGIQNRSHIVEYVEEAA 122

Query: 145 FGKRVVDT--DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
             K+ ++   D      FE LS+   G  + R   AF+ IQEGCD +CTFC++P+ RG  
Sbjct: 123 AEKKTLNAVGDIMAVTDFENLSVDAEGEVKTR---AFIKIQEGCDNYCTFCIIPFARGKL 179

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR  S  V+E R+L++ G  E+ L G ++  +     DG   + S L+  L  I  L+R
Sbjct: 180 KSRRQSDAVEEIRRLVEKGYREVVLTGIHLGNYGKDLHDG--TSLSTLVTELVRIPDLLR 237

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R  +    ++SD LI+   +   + P+LHLP+Q+GSD ILK MNR +   EY+++I  +
Sbjct: 238 IRLGSIESVELSDELIRIIREEPKVCPHLHLPIQAGSDDILKRMNRHYRLAEYKELIRNL 297

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R   P +A+++D IVGFPGET+++FR T+D + ++ ++    F YSPR GTP +    QV
Sbjct: 298 RKEIPGLALTTDLIVGFPGETEENFRETLDTLQELQFSAIHVFPYSPRKGTPAAAYPNQV 357

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
              +K ER   +Q   +E   ++ +    +++ VL+E+  +   + V  S     V +  
Sbjct: 358 KPEIKKERAARVQALGKELAGAYRNQFFHKMVRVLVEEEKEGFFEGV--SDEYIRVFIKD 415

Query: 443 KNHNIGDIIKVRITDVKISTLYG 465
           K+   G +  V I  +  + + G
Sbjct: 416 KDVEKGKVYSVWIDSMTDNGMIG 438


>gi|317471887|ref|ZP_07931222.1| MiaB family RNA modification enzyme [Anaerostipes sp. 3_2_56FAA]
 gi|316900660|gb|EFV22639.1| MiaB family RNA modification enzyme [Anaerostipes sp. 3_2_56FAA]
          Length = 439

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 136/439 (30%), Positives = 227/439 (51%), Gaps = 18/439 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +  V + GC++N Y+S  M DM    G E V+  + AD+ ++NTC +   A  K    L 
Sbjct: 7   KAAVVTLGCKVNQYESDAMFDMLTDAGAEIVSPKEGADIYIVNTCSVTNIAERKSRQMLH 66

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R + L         D +V   GC AQ   EE+ ++ P++++++G      L  +LE+   
Sbjct: 67  RAKKL-------NPDTVVAAVGCYAQVGKEEL-KKDPLIDLIIGNNKKKDLIPILEKYFE 118

Query: 146 GKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           G R      D S   ++E L +     + +    A++ +Q+GC++FC++C++PY RG   
Sbjct: 119 GHRRDAEVLDLSSGSEYEALHVRHLNEHTR----AYIKVQDGCNQFCSYCIIPYARGRVR 174

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR +  V+ E R L  NG  E  + G +V +  G  LDG+K    DLL  + ++ G+ R+
Sbjct: 175 SRDMEDVLSEIRGLARNGCREFVITGIHVCS-YGTDLDGDK-GLIDLLEEIGKVGGVDRI 232

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R  +  P  +++  +K    ++   P+ HL +QSG D  LK MNR++T  E R+  + +R
Sbjct: 233 RLGSLEPGIITEDFVKRLQSIEQFCPHFHLSLQSGCDATLKRMNRKYTTDEIREKAEILR 292

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
               D A+++D IVGFPGET+++F AT   +++IG  +   FKYS R GT  + M +QV+
Sbjct: 293 KAYEDPALTTDIIVGFPGETEEEFEATRKFLEEIGLYEMHVFKYSKRAGTRAAVMEDQVN 352

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE--KGKLVGRSPWLQSVVLN 441
           +  KA R   L     E + +F +  +G    VLIE+  +       VG +     V + 
Sbjct: 353 DQEKARRSAVLIAMNEEHKNAFENRQIGTRRTVLIEEKLRNSSGNFYVGHTKEYVKVAVE 412

Query: 442 SKNHNIGDIIKVRITDVKI 460
           S+      I++V +T +  
Sbjct: 413 SEEPLENQIVEVELTGITG 431


>gi|153954068|ref|YP_001394833.1| hypothetical protein CKL_1443 [Clostridium kluyveri DSM 555]
 gi|238065368|sp|A5N854|RIMO_CLOK5 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|146346949|gb|EDK33485.1| Conserved hypothetical protein [Clostridium kluyveri DSM 555]
          Length = 446

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 132/450 (29%), Positives = 219/450 (48%), Gaps = 22/450 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +  + S GC  N  DS  +     S  YE V     AD I++NTC   E A ++    + 
Sbjct: 5   KVGLISLGCDKNRVDSEIILGNVKSA-YEIVTDPKLADFIIINTCGFIESAKQESIDTIL 63

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER--A 143
            +   K      G    +VV GC+AQ  G E++   P +++++G   Y +L E +    +
Sbjct: 64  EMSQYKGKYNCRG----IVVTGCLAQRYGIELMELLPEIDIMLGVNDYDKLVENINNFIS 119

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
               ++ +  YS  +  E   I+       +  TA+L I EGCD +CT+C++P  RG   
Sbjct: 120 DKQNKIHNCGYSDLNINEGKRIL-----TTKSHTAYLRIAEGCDNYCTYCIIPKIRGKYR 174

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SRS+  ++ E  +L   GV E+ L+ Q+     G  L   K    +L+ S+S+I+G+  +
Sbjct: 175 SRSIENILQECNELSLRGVKEVILIAQDTT-RYGIDLY-NKKMLPELMRSISKIEGIEWI 232

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R    +P ++++ +I      D +  Y+ +P+Q  SD ILK M RR    +  + I+ +R
Sbjct: 233 RLLYCYPEEITEDIIDEIALNDKVCNYIDIPLQHISDNILKLMGRRGRKKDILRNINELR 292

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
               DI+I +  IVGFPGE+++DF+   + ++ I +     FKYS   GT    M +QV 
Sbjct: 293 KKINDISIRTTIIVGFPGESEEDFKELKNFIENIKFDNLGVFKYSREEGTRAYKMKDQVS 352

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVV 439
           E +K  R   L    +    S     +G   +VL+E  GK++G   GR    +P +  V+
Sbjct: 353 EELKTAREGELMMLQKHIIYSMQKYKIGNKYKVLVE--GKKEGVWYGRNYAMAPDIDGVI 410

Query: 440 L--NSKNHNIGDIIKVRITDVKISTLYGEL 467
              + K   +G +I V+IT+     L G +
Sbjct: 411 YIKSKKELKVGTMIDVKITNSVEYDLVGVV 440


>gi|309792044|ref|ZP_07686520.1| MiaB-like tRNA modifying enzyme YliG [Oscillochloris trichoides
           DG6]
 gi|308225937|gb|EFO79689.1| MiaB-like tRNA modifying enzyme YliG [Oscillochloris trichoides
           DG6]
          Length = 439

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 114/447 (25%), Positives = 207/447 (46%), Gaps = 18/447 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           ++ + + GC  N  DS  ME +    G+ R     DAD+I++NTC     A E+    L 
Sbjct: 2   KYHILTLGCPKNSVDSEGMEGLLTDAGHTRAADATDADVIIVNTCSFIAAAREETVQVLR 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +   K +  +      ++ AGC+AQ+ G+ +L +   V+  +  Q + R+ E++  A  
Sbjct: 62  DLGRHKRAGQR------LIAAGCMAQSHGD-LLAQVSGVDAQLSTQAWTRINEVI--APP 112

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
             + +    +    +            +   +A+L I +GC+  C FC +P  +G   S+
Sbjct: 113 ASQPIPLLETPAPAYADWRSTPIQ-RLQPSHSAYLKISDGCNLRCAFCTIPSIKGDMASK 171

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            +  V+ E  +L+  GV EI L+ Q++    G+ L  +    + L      +     +R 
Sbjct: 172 PIRAVLGEVEQLVGQGVQEIVLVAQHLT-DYGRDLGLQDGLATLLEEMCQIVPHSGWIRL 230

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
             ++P  +S+ LI+   +   ++ YL +P+Q      L+ M R       R +I ++R+ 
Sbjct: 231 MYAYPHGISERLIRVMAEHPQVLAYLDMPLQHAHPDTLRRMRRPPDTEHTRAVIQQLRAA 290

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            PD+A+ S FIVG+PGET+ +F+  +  ++++   +  +F+YS   GTP + + +QV   
Sbjct: 291 MPDMALRSTFIVGYPGETNAEFKTLLGFLEEMQLDRVGAFRYSREPGTPAAGLPDQVRPK 350

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-------GKLVGRSPWLQSV 438
           V   R   L +  +      N   VG+ I VLIE HG          G+    +P +   
Sbjct: 351 VIERRWHELMQLQQGISRMRNQRWVGRTIPVLIEAHGATDTGQPLALGRSFRDAPEIDGQ 410

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYG 465
           V       IG ++ VRIT+     ++G
Sbjct: 411 VFVWGEAPIGQVVDVRITEAAEYDVWG 437


>gi|300776432|ref|ZP_07086290.1| MiaB family RNA modification enzyme [Chryseobacterium gleum ATCC
           35910]
 gi|300501942|gb|EFK33082.1| MiaB family RNA modification enzyme [Chryseobacterium gleum ATCC
           35910]
          Length = 433

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 124/459 (27%), Positives = 216/459 (47%), Gaps = 33/459 (7%)

Query: 17  IVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA 76
           +  + +  ++  V + GC  NVYDS  +     + G E V+  D  D++V+NTC   + A
Sbjct: 1   MRTKSVGKKKINVVTLGCSKNVYDSEVLMSQLKANGKEVVH-EDRGDIVVINTCGFIDNA 59

Query: 77  AEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL 136
            E+  + +      KN     G    V V GC+++    ++++  P V+   G +    L
Sbjct: 60  KEESINTILDYVEAKNR----GEVEKVFVTGCLSERYKPDLIKEIPDVDQYFGTRDLPVL 115

Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
            + L            DY  E   ERL+     Y       A+L I EGCD+ C+FC +P
Sbjct: 116 LKHL----------GADYKHELVGERLTTTPKHY-------AYLKISEGCDRPCSFCAIP 158

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256
             RG  +S  + ++V EA+KL   G  E+ L+ Q++  + G  L  +K    DLL  L +
Sbjct: 159 LMRGGHVSTPIEKLVSEAQKLAKKGTKELILIAQDLT-YYGLDLY-KKRALGDLLKELVK 216

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           ++G+  +R   + P    + ++    +   +  Y+ +P+Q  +  +LKSM R  T  +  
Sbjct: 217 VEGVEWIRLHYAFPSGFPEDVLDIIREEPKVCNYIDIPLQHINSDLLKSMKRGTTHEKTD 276

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
            ++ + R   PD+AI +  IVG+PGET + F+   D V +  + +   F YS    T   
Sbjct: 277 ALLGKFREKVPDMAIRTTLIVGYPGETKERFQELKDWVREQKFDRLGCFTYSHEENTTAY 336

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS---- 432
            + + + + VK  R+  + +   +     N   VG++   + ++  KE    +GR+    
Sbjct: 337 VLEDDIPQEVKEARVEEIMELQSQISWEKNQEKVGKVFRCIFDR--KEGNYFIGRTEYDS 394

Query: 433 PWLQSVVLNSKNH---NIGDIIKVRITDVKISTLYGELV 468
           P + + VL S      +IG+  +V+IT  +   LYGELV
Sbjct: 395 PDVDNTVLVSAEDTYISIGEFAEVKITSAEEFDLYGELV 433


>gi|149926143|ref|ZP_01914405.1| hypothetical protein LMED105_01383 [Limnobacter sp. MED105]
 gi|149824961|gb|EDM84173.1| hypothetical protein LMED105_01383 [Limnobacter sp. MED105]
          Length = 453

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 130/465 (27%), Positives = 204/465 (43%), Gaps = 42/465 (9%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P      S GC   + DS R+      +GY    S + ADLIV+NTC   + A ++    
Sbjct: 11  PPSVGFVSLGCPKALVDSERILTQLKVEGYNVSASYEGADLIVVNTCGFIDSAVQESLDA 70

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEE----ILRRSPIVNVVVGPQTYYRLPEL 139
           +G   +             V+V GC+    G E    I +  P V  V GP     + + 
Sbjct: 71  IGEAMHANGK---------VIVTGCLGAKNGNEGKDMITKLHPKVLAVTGPHATEEVMQA 121

Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           +                 D F  L + D G        A+L I EGC+  CTFC++P  R
Sbjct: 122 VHIHLP---------KPHDPFIDL-VPDHGVKLTPKHYAYLKISEGCNHRCTFCIIPSMR 171

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLL 251
           G  +SR + +V+ EA  L   GV E+ ++ Q+ +A+      R   ++G   K  F  L 
Sbjct: 172 GDLVSRPIGEVIREAESLKKAGVKELLVVSQDTSAYGVDLKYRTDFVNGRPVKTQFQQLA 231

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
             L E+   VR+ Y   +P       + A G    ++PYL +P Q     +LK M R  +
Sbjct: 232 EELGELGIWVRMHYVYPYPHVDRVVPLMAEG---KILPYLDIPFQHSHPDVLKRMKRPAS 288

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
                + I   R   PDI + S FI GFPGET+D+F+  +D +++    +   F YSP  
Sbjct: 289 GERNIERIRAWRETCPDITLRSTFITGFPGETEDEFKHLLDFIEEAQLDRVGVFAYSPVD 348

Query: 372 GTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLV 429
           G   + +   V E VK ER   L +   +  +S N+A +G++++VL+++  +E    +  
Sbjct: 349 GAVANALDNPVPEEVKEERRARLMELQEKISLSRNEAKLGKVMQVLVDETDEEGIVARSK 408

Query: 430 GRSPWLQSVVL------NSKNHNIGDIIKVRITDVKISTLYGELV 468
             +P +   V        ++    GD I V I D     L+G +V
Sbjct: 409 ADAPEIDGNVFIPMPEDKARQPKPGDFINVLIDDCDEHDLWGRIV 453


>gi|297565219|ref|YP_003684191.1| MiaB-like tRNA modifying enzyme YliG [Meiothermus silvanus DSM
           9946]
 gi|296849668|gb|ADH62683.1| MiaB-like tRNA modifying enzyme YliG [Meiothermus silvanus DSM
           9946]
          Length = 457

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 132/458 (28%), Positives = 217/458 (47%), Gaps = 40/458 (8%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC   + DS ++     ++GYE   + +DA+++V+NTC     A E+  S +G
Sbjct: 4   KVGFVSLGCPKALVDSEQILSRLRAEGYETSPTYEDAEVVVVNTCGFITPAVEESLSAIG 63

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                            V+V GC+     E I    P V  V GP    ++ E + R   
Sbjct: 64  EALAENGK---------VIVTGCLGAR-PEVIQEAHPQVLEVTGPGQVDKVLEAVHRVL- 112

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                       D     +++           A+L I EGC+  C+FC++P  RG+++SR
Sbjct: 113 ----------PPDADPFTALIPPQVKLTPRHYAYLKIAEGCNHKCSFCIIPQLRGLQVSR 162

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE---------KCTFSDLLYSLSE 256
              +++ EA +L+  G  E+ ++ Q+ +A  G  +            +    DL+  L+E
Sbjct: 163 DAGEILSEATRLVSTGTRELLVIAQDTSA-YGVDIRHRPSEFQGRQVRAHLVDLVNELAE 221

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           +   VRL Y   +P       + A G    ++PYL +P+Q  S +IL++M R   A  + 
Sbjct: 222 LGAWVRLHYVYPYPHVKQLIPLMAEG---KILPYLDVPLQHASPKILRAMRRPGGAESHL 278

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
           Q I   RS+ PD+AI S FIVGFPGET++DF   ++ + +    +  +F YS   G   +
Sbjct: 279 QTIREWRSIVPDLAIRSTFIVGFPGETEEDFALLLEFLREARLERVGAFTYSEVPGAEAN 338

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS---- 432
            +   V + +K ER     +  +   +  N A VG+ +EV+++ +G+E G +VGRS    
Sbjct: 339 ALDNPVPQEIKEERRARFMEVQQRLSLEKNQAKVGKTLEVIVDDYGEEPGMVVGRSKYDA 398

Query: 433 PWLQSVVL--NSKNHNIGDIIKVRITDVKISTLYGELV 468
           P +  +V         IGD+I+VRIT  +   LYGE V
Sbjct: 399 PGIDGLVYAETDGTVKIGDLIRVRITKAEAYDLYGETV 436


>gi|21231995|ref|NP_637912.1| hypothetical protein XCC2564 [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66767878|ref|YP_242640.1| ribosomal protein S12 methylthiotransferase [Xanthomonas campestris
           pv. campestris str. 8004]
 gi|81306145|sp|Q4UWF3|RIMO_XANC8 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|81793516|sp|Q8P7P7|RIMO_XANCP RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|21113730|gb|AAM41836.1| conserved hypothetical protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66573210|gb|AAY48620.1| conserved hypothetical protein [Xanthomonas campestris pv.
           campestris str. 8004]
          Length = 457

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 130/458 (28%), Positives = 211/458 (46%), Gaps = 39/458 (8%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC   + DS R+      +GY+ V S D AD++V+NTC   + A  +    +G
Sbjct: 7   KVGFVSLGCPKALVDSERILTQLRVEGYDIVPSYDAADVVVVNTCGFIDSAVTESLDAIG 66

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                         +  V+V GC+ +   E+I    P V  V GPQ Y  + E +  A  
Sbjct: 67  EA---------MNANGKVIVTGCLGKR-PEQIREAYPQVLAVSGPQDYQSVMEAVHAALP 116

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            +          D F  L + D G        A+L I EGC+  C+FC++P  RG   SR
Sbjct: 117 PR---------HDPFVDL-VPDYGIKLTPRHYAYLKISEGCNHRCSFCIIPSMRGDLASR 166

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSD---------LLYSLSE 256
            + +V+ EA +L+  GV E+ ++ Q+ +A  G  L   +  + D         L   LSE
Sbjct: 167 PVDEVLREAERLVRGGVKELLVVSQDTSA-YGVDLKYAERPWRDRMYQTRMKALCEGLSE 225

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           +    RL Y   +P       + A G    L+PYL +P Q  S RILK M R     +  
Sbjct: 226 LGVWTRLHYVYPYPHVDDVIPLMAEG---KLLPYLDIPFQHASPRILKLMKRPGAVEKTL 282

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
           + + R +++ P+I + S FIVGFPGETD +F A ++ +D+    +  +F YSP  G   +
Sbjct: 283 ERVQRWKAMCPEITVRSTFIVGFPGETDAEFEALLEFLDQAQLDRVGAFAYSPVEGASAN 342

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE--KHGKEKGKLVGRSPW 434
            + + V E +K ERL     +  E   +  +A +G + + L++  +      +    +P 
Sbjct: 343 ALPDPVPEELKQERLARFMARQAEISAARLEAKIGSVQQCLVDLIEDDIAVARSRADAPE 402

Query: 435 LQS-VVLNSKNHN---IGDIIKVRITDVKISTLYGELV 468
           +   V + +       +GD++ V ITD     L+G+ +
Sbjct: 403 IDGLVHIQNGGELKLKVGDLVDVEITDSDEHDLFGDAL 440


>gi|57233882|ref|YP_182095.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Dehalococcoides
           ethenogenes 195]
 gi|123618318|sp|Q3Z6Q4|MIAB_DEHE1 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|57224330|gb|AAW39387.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Dehalococcoides
           ethenogenes 195]
          Length = 418

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 153/443 (34%), Positives = 235/443 (53%), Gaps = 34/443 (7%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           +++ + GCQMN  +S R+  +F   GY   +  +DA+L+++N+C +RE A  KV + L  
Sbjct: 4   YYLWTIGCQMNQAESERLGRLFELWGYSLADKAEDAELVLVNSCVVREHAENKVINRLHI 63

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           +R LK+        L + + GC+   +   + ++ P V+ +  P       E+       
Sbjct: 64  LRKLKDK----NPRLKIALTGCLVGQDIASVRKKFPFVDYIFQPGALPDWGEI------- 112

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
                                     K  V+A +TI +GCD FCT+C+VPY RG E SRS
Sbjct: 113 ------------------PEGFILPLKPPVSASITIMQGCDNFCTYCIVPYRRGREKSRS 154

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
           +S++  EA +L+  G  E+ LLGQNV++  G  L  EK   +DLLY+LS+I GL+R+R+ 
Sbjct: 155 ISELCCEAAELVRRGSREVVLLGQNVDS-YGHDLP-EKPCLADLLYALSDIPGLLRIRFL 212

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
           TSHP+D+S  LI A   L  +   L LPVQ+G+D IL +M R +T+ +YR+++ R+++  
Sbjct: 213 TSHPKDISQKLIDAMASLHKVCHSLSLPVQAGADTILAAMRRGYTSEQYRELVGRLKTAM 272

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN-MLEQVDEN 385
           PDI++ +D IVGFP ET + F  +  L+  IGY       YSPR  T  +  M + V   
Sbjct: 273 PDISLQTDLIVGFPSETAEQFDQSYKLMSDIGYDAIHVAAYSPRPQTAAARDMADDVPVA 332

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445
            K  RL  ++   +E     N A V    EVL+E  G++K K  GR+   + V L S   
Sbjct: 333 EKKRRLKLIEDLQKETVSKANSALVDTFAEVLVE--GRQKNKWQGRTLGGKLVFLESDLP 390

Query: 446 NIGDIIKVRITDVKISTLYGELV 468
             G +I V+I      +L  +LV
Sbjct: 391 LEGCLINVKIFKASPWSLQAKLV 413


>gi|119773625|ref|YP_926365.1| ribosomal protein S12 methylthiotransferase [Shewanella amazonensis
           SB2B]
 gi|119766125|gb|ABL98695.1| MiaB-like putative RNA modifying enzyme YliG [Shewanella
           amazonensis SB2B]
          Length = 493

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 137/468 (29%), Positives = 211/468 (45%), Gaps = 36/468 (7%)

Query: 15  SQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIRE 74
           ++  D  I   R    S GC  N+ DS R+       GYE  NS D+ADL+++NTC   +
Sbjct: 46  AKASDGTIQGNRIGFVSLGCPKNLVDSERILTQLRIDGYEVTNSYDNADLVIVNTCGFID 105

Query: 75  KAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYY 134
            A E+    +                  V+V GC+  A+  +I    P V  + GP +Y 
Sbjct: 106 AAVEESLDAVREALEENGK---------VIVTGCLG-AKENQIREVHPDVLEITGPHSYE 155

Query: 135 RLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCV 194
            +   + +               + F  L I   G        A+L I EGCD  CTFC+
Sbjct: 156 AVLNHVHKY--------VPKPEHNPFTSL-IPQTGVKLTPKHYAYLKISEGCDNRCTFCI 206

Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE---------KC 245
           +P  RG   SR +  V+DEA++L+++GV EI ++ Q+ +A  GK  DG          K 
Sbjct: 207 IPALRGDLDSRGVGSVLDEAKRLVESGVQEILVVSQDTSA-YGKDKDGRTDFWNGMPVKQ 265

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
             + L   L ++   VRL Y   +P       + A G   +++PYL LP+Q  S R+LK 
Sbjct: 266 DITSLARQLGKMGAWVRLHYVYPYPWVDDLIPLMAEG---LILPYLDLPLQHASPRVLKM 322

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           M R          I + R + PD+ I S FIVGFPGET++DF   +D + +    +   F
Sbjct: 323 MKRPGRVDRQLDAIKKWREICPDLVIRSTFIVGFPGETEEDFEMLLDFLREARLDRVGCF 382

Query: 366 KYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK 425
           KYS   G   + + E + E VK +R     +   E         VG+ +++LI+   +E 
Sbjct: 383 KYSEVDGAVANTLAELISEEVKEDRYERFMEVQAEISAERLARLVGRELDILIDDVDEEG 442

Query: 426 --GKLVGRSPWLQSVVLNSK--NHNIGDIIKVRITDVKISTLYGELVV 469
             G+    +P +  +V  +       GD+++ RI       L+ ELV 
Sbjct: 443 AIGRSYADAPEIDGMVFINGETELTPGDMVRARIVASDEHDLWAELVA 490


>gi|260911738|ref|ZP_05918314.1| MiaB family RNA modification enzyme [Prevotella sp. oral taxon 472
           str. F0295]
 gi|260634163|gb|EEX52277.1| MiaB family RNA modification enzyme [Prevotella sp. oral taxon 472
           str. F0295]
          Length = 431

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 119/450 (26%), Positives = 206/450 (45%), Gaps = 34/450 (7%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEKVYSFL 84
             + + GC  N+ DS  +   F + GY  V+       +++V+NTC   E A E+  + +
Sbjct: 6   VDIITMGCSKNLVDSELLMKQFEANGYHCVHDSKNPKGEIVVINTCGFIESAKEESINTI 65

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
                 K      G    + V GC++Q   +E+ +  P V+   G   Y  L + L    
Sbjct: 66  LEFAQAKEE----GRLKQLYVMGCLSQRYQKELEQEIPQVDKFYGKFNYKNLLKDL---- 117

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            GK V+ +                         A+L I EGCD+ C +C +P   G   S
Sbjct: 118 -GKGVIASCNGTRSI------------TTPRHYAYLKISEGCDRSCAYCAIPLITGKHTS 164

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R   ++++E R L+  GV E  ++ Q +  + G  ++G++   ++L+  +++I+G+  +R
Sbjct: 165 RPKEEILEEVRSLVSQGVKEFQIIAQELT-YYGVDINGQRQ-ITNLISEMADIEGVEWIR 222

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
              ++P      L++       +  Y+ + +Q  SD +L  M+R  T  +  ++I RIR 
Sbjct: 223 LHYAYPNQFPIDLLEVIKSKPNVCKYIDIALQHISDNMLTRMHRHVTKAQTMELIKRIRE 282

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN-MLEQVD 383
             P I + +  +VGFPGETDDDF   +D V    + +  +F YS   GT  +    + V 
Sbjct: 283 EIPGIHLRTTLMVGFPGETDDDFNELLDFVKWARFERMGAFIYSEEEGTYSAKHYEDNVP 342

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQS-V 438
             VK  RL  L    +E         VG+ + V+I++  KE    +GR+    P +   V
Sbjct: 343 NEVKQRRLDQLMALQQEISAEVEAQKVGKTLRVIIDR--KEGDYYIGRTEWASPEVDPEV 400

Query: 439 VLNSK-NHNIGDIIKVRITDVKISTLYGEL 467
           ++ +    ++G    VRITD +   LYGE+
Sbjct: 401 LIPATMRLHVGKFYNVRITDSEEFDLYGEI 430


>gi|295695882|ref|YP_003589120.1| MiaB-like tRNA modifying enzyme [Bacillus tusciae DSM 2912]
 gi|295411484|gb|ADG05976.1| MiaB-like tRNA modifying enzyme [Bacillus tusciae DSM 2912]
          Length = 473

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 134/454 (29%), Positives = 230/454 (50%), Gaps = 22/454 (4%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           +  R    + GC++N YD+  +  +F + GY  V   D+AD+ V+NTC +      K   
Sbjct: 1   MVNRVAFHTLGCKVNAYDTEAIRHLFRNAGYAEVPFEDEADVYVINTCSVTNVGDRKSRQ 60

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +          I+   +  +VV GC AQ    E+    P V++V+G     ++ E +E+
Sbjct: 61  II-------RRAIRRSPEATIVVTGCYAQVAPGEVAA-IPGVDLVMGNDRRGQIVEWVEK 112

Query: 143 ARFGKRVVDTDYSVEDKFERLSI-VDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
            R  +R      +V    +   + V    +R R   A L IQ+GC+ FC+FC++P++RG 
Sbjct: 113 VREERRPYQVVANVRRVRDFEELDVPAFADRAR---ATLKIQDGCNNFCSFCIIPFSRGF 169

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKGL 260
             SR    V+ +AR+L + G  EI L G +     G G D E  T +DLL  L  E++  
Sbjct: 170 VRSRKPENVLHQARRLAEAGYREIVLTGIHTG---GYGADLEGYTLADLLVDLERELEDS 226

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
           VR+R ++     + + ++        +  +LH+P+QSG D +L+ M RR+T  EY + I 
Sbjct: 227 VRIRISSIEASQIDERMLDVLRRSKQICRHLHIPLQSGDDEVLRRMRRRYTVAEYAEKIH 286

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           RIR V P++A+++D IVGFPGET + F  T  L++++ ++Q   F YSPR GT  +    
Sbjct: 287 RIREVLPEVAVTTDVIVGFPGETKEQFDNTRRLIEELKFSQLHVFPYSPRRGTAAARYPN 346

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE------KGKLVGRSPW 434
            V   VK ER+  L +  ++  +++    VG+++ V++E   ++           G +  
Sbjct: 347 PVPAEVKEERVRQLVRLSKDLTLAYASRFVGRVLPVVVESSVEDRRAEDGNMLFTGHADN 406

Query: 435 LQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
              +V  +    +G +++VR+ D      +G +V
Sbjct: 407 YLEMVFAADPSMVGQLVEVRLEDPGAERSFGSVV 440


>gi|240949880|ref|ZP_04754204.1| MiaB-like tRNA modifying enzyme YliG [Actinobacillus minor NM305]
 gi|240295671|gb|EER46378.1| MiaB-like tRNA modifying enzyme YliG [Actinobacillus minor NM305]
          Length = 444

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 130/464 (28%), Positives = 212/464 (45%), Gaps = 41/464 (8%)

Query: 20  QCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEK 79
           +   P   F+ S GC  N+ DS R+     S GY  + S + ADL+++NTC   + A ++
Sbjct: 2   KNSTPNIGFI-SLGCPKNLVDSERILTELRSDGYNIIPSYEGADLVIVNTCGFIDSAVQE 60

Query: 80  VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL 139
               +G                 V+V GC+  A+  +I    P V  + GP +Y  + + 
Sbjct: 61  SLESIGEALEANGK---------VIVTGCLG-AKENQIREVHPKVLEITGPHSYEAVMKH 110

Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           + +              E       +   G        A+L I EGCD  CTFC++P  R
Sbjct: 111 VHKY---------VPKPEYNPYVTLVPKQGVKLTPKHYAYLKISEGCDHRCTFCIIPSMR 161

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE------------KCTF 247
           G   SRS+ QV+DEA++L+D+GV E+ ++ Q+ +A+       E            K   
Sbjct: 162 GDLDSRSIVQVLDEAKRLVDSGVKELLIVSQDTSAYALDKKKEEGTKTVFWNGMPIKNNL 221

Query: 248 SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307
             L   L  +   VRL Y   +P       + A G    ++PYL +P+Q  S +ILK+M 
Sbjct: 222 ITLCEQLGSMGVWVRLHYVYPYPHVDDLIPLMAQG---KILPYLDIPLQHASPKILKAMK 278

Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           R  +     + I + R + P++ + S FIVGFPGET++DF+  +D + +    +   FK+
Sbjct: 279 RPGSIERTLERIKKWREICPELTLRSTFIVGFPGETEEDFQMLLDFLKEAQLDRVGCFKF 338

Query: 368 SPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-- 425
           SP  G   + M +QV E+VK ER     +  +E         +G+ + V++++   E   
Sbjct: 339 SPVEGAVATEMADQVPEDVKEERFHRFMQLQQEISAQRLQQKIGKTLAVIVDEIDNEGII 398

Query: 426 GKLVGRSPWLQSVVLNSK----NHNIGDIIKVRITDVKISTLYG 465
           G+ +  +P +  VV          + G II V IT+     L+G
Sbjct: 399 GRSMADAPEIDGVVYVDNLSEMEVSAGQIISVTITNADEYDLWG 442


>gi|21243462|ref|NP_643044.1| ribosomal protein S12 methylthiotransferase [Xanthomonas axonopodis
           pv. citri str. 306]
 gi|81800989|sp|Q8PJ10|RIMO_XANAC RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|21109018|gb|AAM37580.1| conserved hypothetical protein [Xanthomonas axonopodis pv. citri
           str. 306]
          Length = 457

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 131/458 (28%), Positives = 212/458 (46%), Gaps = 39/458 (8%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC   + DS R+      +GY+ V S D AD++V+NTC   + A  +    +G
Sbjct: 7   KVGFVSLGCPKALVDSERILTQLRVEGYDIVPSYDAADVVVVNTCGFIDSAVTESLDAIG 66

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                         +  V+V GC+ +   E+I    P V  V GPQ Y  + E +  A  
Sbjct: 67  EA---------MNANGKVIVTGCLGKR-PEQIREAYPQVLAVSGPQDYQSVMEAVHAALP 116

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            +          D F  L + D G        A+L I EGC+  C+FC++P  RG  +SR
Sbjct: 117 PR---------HDPFVDL-VPDYGIKLTPRHYAYLKISEGCNHRCSFCIIPSMRGDLVSR 166

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSD---------LLYSLSE 256
            + +V+ EA +L+  GV E+ ++ Q+ +A  G  L   +  + D         L   LSE
Sbjct: 167 PVDEVLREAERLVRGGVKELLVVSQDTSA-YGVDLKYAERPWRDRLYQTRMKALCEGLSE 225

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           +    RL Y   +P       + A G    L+PYL +P Q  S RILK M R     +  
Sbjct: 226 LGVWTRLHYVYPYPHVDDVIGLMAEG---KLLPYLDIPFQHASPRILKLMKRPGAVEKTL 282

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
           + + R +++ P+I + S FIVGFPGETD +F + +D +D+    +  +F YSP  G   +
Sbjct: 283 ERVQRWKAMCPEITVRSTFIVGFPGETDAEFESLLDFLDQAQLDRVGAFAYSPVDGASAN 342

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE--KHGKEKGKLVGRSPW 434
            + +QV E VK ERL     K  +      ++ +G + + L++  +      +    +P 
Sbjct: 343 ALPDQVPEEVKQERLARFMAKQAQISALRLESKIGSVQQCLVDVIEDDIAVARSRADAPE 402

Query: 435 LQS-VVLNSKNHN---IGDIIKVRITDVKISTLYGELV 468
           +   V + +       +GD++ V ITD     L+G+ +
Sbjct: 403 IDGLVHIQNGGELGLKVGDLVDVEITDSDEHDLFGDAL 440


>gi|149378381|ref|ZP_01896082.1| hypothetical protein MDG893_01565 [Marinobacter algicola DG893]
 gi|149357330|gb|EDM45851.1| hypothetical protein MDG893_01565 [Marinobacter algicola DG893]
          Length = 447

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 135/468 (28%), Positives = 215/468 (45%), Gaps = 33/468 (7%)

Query: 13  MVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHI 72
           M ++I        +    S GC   + DS R+       GY+ V + +DAD++V+NTC  
Sbjct: 1   MTNKISSVPAGSGKVGFISLGCPKALVDSERILTQLRLDGYDVVPTYNDADIVVVNTCGF 60

Query: 73  REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT 132
            + A ++    +G              +  V+V GC+   E E I    P V  V GP  
Sbjct: 61  IDAAKQESLDAIGEA---------INENGKVIVTGCMG-VEAERIRDTHPGVLAVSGPHA 110

Query: 133 YYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTF 192
           Y  +   + +     +         D F  L    G     R   A+L I EGC+  CTF
Sbjct: 111 YEEVVGAVHQFVPPNKQ-------HDPFTDLVPPQGIKLTPRHY-AYLKISEGCNHRCTF 162

Query: 193 CVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--K 244
           C++P  RG  +SR +  V+DEA++L+D GV E+ ++ Q+ +A+      R     G   K
Sbjct: 163 CIIPSMRGDLVSRPIGDVMDEAKRLVDAGVKELLVISQDTSAYGVDTKYRTGFWQGRPLK 222

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304
                L  +L E+   VRL Y   +P       + A G    ++PYL +P Q  S ++LK
Sbjct: 223 TKMQSLCEALGEMGVWVRLHYVYPYPHVDDVIPLMAEG---KILPYLDIPFQHASPKVLK 279

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
           +M R     +  + I + R + P++ I S FIVGFPGET++DF+  +D +D+    +  +
Sbjct: 280 AMKRPAHDSKTLERIRKWRDICPELTIRSTFIVGFPGETEEDFQYLLDWLDEAQLDRVGA 339

Query: 365 FKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE 424
           FKYSP  G   + +   V E VK ERL    +K      +   A +GQ I+VLI++  +E
Sbjct: 340 FKYSPVEGAKANEIEGAVPEEVKEERLARFMEKQAGISAARLRAKIGQTIDVLIDEVDEE 399

Query: 425 K--GKLVGRSPWLQSVVL--NSKNHNIGDIIKVRITDVKISTLYGELV 468
              G+    +P +  +V   +      G I++  +       L+  LV
Sbjct: 400 GAIGRSKADAPEIDGMVYLNDETGLVPGQIVQAMVEHADEHDLWASLV 447


>gi|311748439|ref|ZP_07722224.1| 2-methylthioadenine synthetase [Algoriphagus sp. PR1]
 gi|311302786|gb|EAZ81201.2| 2-methylthioadenine synthetase [Algoriphagus sp. PR1]
          Length = 437

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 118/461 (25%), Positives = 219/461 (47%), Gaps = 36/461 (7%)

Query: 17  IVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSM--DDADLIVLNTCHIRE 74
           +  + +   +  + + GC  N+ DS  +       G    +    DD ++I++NTC   +
Sbjct: 1   MKARTLKKDKVNIITMGCSKNLVDSEVLLTQLKGNGINASHESGTDDNNIIIINTCGFID 60

Query: 75  KAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYY 134
            A ++    + +  + K      G    V V GC++Q   +++ +  P V+   G +   
Sbjct: 61  NAKQESVDTILQYVDAKEQ----GLVDKVYVTGCLSQRYKDDLEKEIPQVDAFFGTRDL- 115

Query: 135 RLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCV 194
             P +L++ +        DY  E   ERL      Y       A++ I EGCD+ C+FC 
Sbjct: 116 --PAILKKFK-------ADYKHELVGERLLTHSSHY-------AYMKISEGCDRPCSFCA 159

Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL 254
           +P  RG  +SR + ++V EA     NG  E+ L+ Q+   + G  +  +K   ++L+  L
Sbjct: 160 IPLMRGGHVSRPIEELVKEAEHKAANGTKELLLIAQDST-YYGLDIY-KKRNLAELMRRL 217

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
           S++ G+  +R   ++P      +I+   + + +  YL +P+Q GS  +LK+M R  T  +
Sbjct: 218 SDVNGIDWIRLHYAYPTGFPMEVIEVMKERENICNYLDIPLQHGSTDVLKAMRRGTTRQK 277

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
              +I  IR + PDIAI +  I G PGE + +++  +D ++++ + +   F YS    T 
Sbjct: 278 QEDLIHSIRDILPDIAIRTTLIAGHPGEGEKEYQEMVDFIERMKFERLGVFTYSHEENTH 337

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPW 434
             +M + + + VK ER   L +   +     N   +G+  +VLI+K  KE G  +GR+  
Sbjct: 338 AFSMEDSIPQEVKQERANNLMEIQEQISYDLNQEKIGKTFKVLIDK--KEGGHFIGRT-E 394

Query: 435 LQSVVLNSKNH--------NIGDIIKVRITDVKISTLYGEL 467
             SV ++++           +GD + V++T+     LY E+
Sbjct: 395 YDSVEVDNEVLIDASKHYCRVGDFVNVKVTEATEFDLYAEV 435


>gi|224371857|ref|YP_002606023.1| 2-methylthioadenine synthetase [Desulfobacterium autotrophicum
           HRM2]
 gi|223694576|gb|ACN17859.1| 2-methylthioadenine synthetase [Desulfobacterium autotrophicum
           HRM2]
          Length = 441

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 128/451 (28%), Positives = 210/451 (46%), Gaps = 21/451 (4%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
            F++S GC  N  DS  M     S G+  V+    AD+I++NTC     A+ +    +  
Sbjct: 3   IFLESLGCCRNQVDSEVMLGRLASAGHGIVHDPSQADVIIVNTCGFISAASAEAVDTILD 62

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAE-GEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           +   K    ++G    +VV GC+ +    +++    P V+V +G        E++     
Sbjct: 63  MAVYK----RDGRCKRLVVTGCLPERFKHDDLGGELPEVDVFLGTGACD---EIVRVVES 115

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
              +V     +  + +   +            A + I EGCD+ CT+C++P  RGI+ SR
Sbjct: 116 TGSMVLVPDVLARQMQGHPLPRC---LTLDYLAHVKISEGCDRHCTYCIIPRLRGIQRSR 172

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT---FSDLLYSLSEIKGLVR 262
            +  VV E+  L+ NGV EI L+G+N  +  G  LDGE       + L   +  +   V 
Sbjct: 173 GVDAVVTESELLVKNGVKEIVLVGENT-SDYGVDLDGEVNLAGLLTTLSQRIKALDPDVW 231

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R   +HP  +   +I+    LD +  Y  +P+Q  S RIL+ M R +T  +  ++I  I
Sbjct: 232 IRLLYTHPSSLDFDVIRVIAGLDNVCTYFDVPIQHASSRILRRMGRNYTREDLDRLIAFI 291

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R   PD A+ +  I GFPGET+ DF   +  V +I + Q   F YS         + + V
Sbjct: 292 RKTAPDAALRTTLITGFPGETEADFNELLAFVKEIRFDQLGVFAYSDSDDLASHGLKDHV 351

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSV 438
           DE     R   +     E   S N+A +G+   VL+E+   ++G  +GR+    P +  +
Sbjct: 352 DEETGEARRDAIMAAQAEISESLNEAYLGKTFTVLVEE-NPDEGIFLGRTNFQAPEVDGI 410

Query: 439 VLN-SKNHNIGDIIKVRITDVKISTLYGELV 468
                +N +IG  ++V+IT+     L GELV
Sbjct: 411 TFIYGENIDIGTFVRVKITETHAYDLVGELV 441


>gi|330830506|ref|YP_004393458.1| ribosomal protein S12 methylthiotransferase rimO [Aeromonas veronii
           B565]
 gi|328805642|gb|AEB50841.1| Ribosomal protein S12 methylthiotransferase rimO [Aeromonas veronii
           B565]
          Length = 428

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 129/448 (28%), Positives = 210/448 (46%), Gaps = 34/448 (7%)

Query: 33  GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92
           GC  N+ DS R+     ++GY+ V S DDA+L+V+NTC   + A ++    +G       
Sbjct: 2   GCPKNLVDSERILTQLRTEGYDVVPSYDDAELVVVNTCGFIDSAVQESLEAIGEALAENG 61

Query: 93  SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDT 152
                     V+V GC+  A+  +I    P V  + GP  Y  +   + +          
Sbjct: 62  K---------VIVTGCLG-AKENQIREIHPKVLEITGPHAYEEVLGHVHKY--------V 103

Query: 153 DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVD 212
           +    + F  L    G     R   A+L I EGC+  CTFC++P  RG  +SR +  V+ 
Sbjct: 104 EKPQHNPFTSLVPAHGVKLTPRHY-AYLKISEGCNHRCTFCIIPSMRGDLVSRPIGDVLA 162

Query: 213 EARKLIDNGVCEITLLGQNVNA------WRGKGLDGE--KCTFSDLLYSLSEIKGLVRLR 264
           EA++L + GV E+ ++ Q+ +A       R    DG   K +   L   L+++   VRL 
Sbjct: 163 EAKRLKEAGVKELLVISQDTSAYGVDVKHRTGFYDGMPVKTSMVALCEELAKLDIWVRLH 222

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           Y   +P       +        ++PYL +P+Q  S RILK M R  T     + I + R 
Sbjct: 223 YVYPYPHVDDIIPLM---RDGKVLPYLDIPLQHASPRILKLMKRPGTVERTLERIQKWRE 279

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           + P I + S FIVGFPGET++DF+  +D +DK    +   FKYSP  G   + + + V E
Sbjct: 280 ICPQITLRSTFIVGFPGETEEDFQMLLDFIDKAELDRVGCFKYSPVEGALANELPDPVPE 339

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPWLQSVVLNS 442
            ++ ER     +  ++  +      VGQ + V+I++  +E   G+    +P +  +V  +
Sbjct: 340 EIQEERFQRFMELQQQVSIRKLARKVGQEMTVIIDEVDEEGATGRSFADAPEIDGLVYLN 399

Query: 443 KN--HNIGDIIKVRITDVKISTLYGELV 468
                  GD++KVRI +     L+  L+
Sbjct: 400 GETGLKPGDMVKVRIDESDEYDLWASLI 427


>gi|21218120|dbj|BAB96555.1| putative fructokinase-like protein [Pseudomonas putida]
          Length = 536

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 125/477 (26%), Positives = 208/477 (43%), Gaps = 49/477 (10%)

Query: 18  VDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA 77
           +     P+  FV S GC   + DS ++     ++GYE   + D ADL+V+NTC   ++A 
Sbjct: 82  ISSSAAPKVGFV-SLGCPKALVDSEQIITQLRAEGYEISGTYDGADLVVVNTCGFIDEAV 140

Query: 78  EKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEE----ILRRSPIVNVVVGPQTY 133
           ++    +G              +  V+V GC+   +       I    P V  V GP   
Sbjct: 141 QESLDAIGEA---------LNENGKVIVTGCLGAKKSASGTGLIEEVHPKVLAVTGPHAT 191

Query: 134 YRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC 193
             +   +                 D F  L    G     R   A+L I EGC+  CTFC
Sbjct: 192 NEVMNAVHAHLP---------KPHDPFTDLVPAAGIKLTPRHY-AYLKISEGCNHRCTFC 241

Query: 194 VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KC 245
           ++P  RG  +SR ++ V+ EA  L  +GV E+ ++ Q+ +A+      R    +G+  K 
Sbjct: 242 IIPSMRGDLVSRPVADVMLEAENLFKSGVKELLVISQDTSAYGVDVKYRTGFWNGKPVKT 301

Query: 246 TFSDLLYSLSEI----KGLVRLRYTTSHPRDMSDCLIKAHGDLD-VLMPYLHLPVQSGSD 300
             +DL+ +L E+       VRL Y   +P       + A G L   ++PYL +P Q    
Sbjct: 302 RMTDLVGALGELAAQYGAWVRLHYVYPYPSVDEVIPMMAEGALKGHVLPYLDVPFQHAHP 361

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
            +LK M R   A +  + +   R + PD+ I S FI GFPGET++ F   +D +      
Sbjct: 362 EVLKRMKRPANAEKVLERVQAWRKICPDLTIRSTFIAGFPGETEEQFETLLDFIRVADLD 421

Query: 361 QAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
           +   F YSP  G   + +   + + V+ ER     +   E   +     +G+ ++VL+++
Sbjct: 422 RVGCFAYSPVEGASANELDGALPDEVREERRARFMELAEELSAARMKRKIGKTLKVLVDE 481

Query: 421 HGKEKGKLVGRS----PWLQSVVLNSK------NHNIGDIIKVRITDVKISTLYGEL 467
              + G  +GR+    P +  VV  +        +  GD + V+I+      L+GE+
Sbjct: 482 VNADGG--IGRTAADAPEIDGVVYIAPAVKASRRYKAGDFVSVKISGADGHDLWGEV 536


>gi|209520560|ref|ZP_03269316.1| MiaB-like tRNA modifying enzyme YliG [Burkholderia sp. H160]
 gi|209498997|gb|EDZ99096.1| MiaB-like tRNA modifying enzyme YliG [Burkholderia sp. H160]
          Length = 476

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 128/482 (26%), Positives = 212/482 (43%), Gaps = 49/482 (10%)

Query: 13  MVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHI 72
           M S   +    P+  FV S GC   + DS ++     ++GYE   + D ADL+V+NTC  
Sbjct: 17  MSSTPSNALATPKVGFV-SLGCPKALVDSEQIITQLRAEGYEISGTYDGADLVVVNTCGF 75

Query: 73  REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEE----ILRRSPIVNVVV 128
            ++A ++    +G   +             V+V GC+   +       I    P V  V 
Sbjct: 76  IDEAVQESLDAIGEALSENGK---------VIVTGCLGAKKSASGSGLIEEVHPKVLAVT 126

Query: 129 GPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
           GP     + + +                 D F  L     G        A+L I EGC+ 
Sbjct: 127 GPHAVGEVMQAVHNHLP---------KPHDPFVDLVPA-AGVKLTPRHYAYLKISEGCNH 176

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA------WRGKGLDG 242
            CTFC++P  RG  +SR +++V+ EA  L  +GV E+ ++ Q+ +A      +R    +G
Sbjct: 177 RCTFCIIPSMRGDLVSRPVAEVMLEAENLFKSGVKELLVISQDTSAYGVDVKYRTGFWNG 236

Query: 243 E--KCTFSDLLYSLSEI----KGLVRLRYTTSHPRDMSDCLIKAHGDLD-VLMPYLHLPV 295
           +  K   +DL+ +L E+       VRL Y   +P       + A G     ++PYL +P 
Sbjct: 237 KPIKTRMTDLVAALGELAAQYGAWVRLHYVYPYPSVDEVIPMMAEGPYKGHVLPYLDVPF 296

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
           Q     +LK M R   A +  + +   R + PD+ I S FI GFPGET++ F   +D + 
Sbjct: 297 QHAHPEVLKRMKRPANAEKVMERVKAWREICPDLTIRSTFIAGFPGETEEQFETLLDFIR 356

Query: 356 KIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIE 415
           +    +   F YSP  G   + +   + + V+ ER     +   +         VG+ ++
Sbjct: 357 EAELDRVGCFAYSPVEGASANELDGALPDEVREERRARFMEVAEQVSAKRIAKKVGKTLK 416

Query: 416 VLIEKHGKEKGKLVGRS----PWLQSVVLNS------KNHNIGDIIKVRITDVKISTLYG 465
           VL+++   + G  VGR+    P +  VV  +      K + +GD + V+IT      L+G
Sbjct: 417 VLVDEINADGG--VGRTAADAPEIDGVVYIAPTTKASKRYKVGDFVSVKITGADGHDLWG 474

Query: 466 EL 467
           E+
Sbjct: 475 EV 476


>gi|319775410|ref|YP_004137898.1| 2-methylthioadenine synthetase [Haemophilus influenzae F3047]
 gi|329122563|ref|ZP_08251144.1| MiaB family RNA modification enzyme [Haemophilus aegyptius ATCC
           11116]
 gi|317450001|emb|CBY86214.1| 2-methylthioadenine synthetase [Haemophilus influenzae F3047]
 gi|327473114|gb|EGF18540.1| MiaB family RNA modification enzyme [Haemophilus aegyptius ATCC
           11116]
          Length = 445

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 135/465 (29%), Positives = 223/465 (47%), Gaps = 42/465 (9%)

Query: 20  QCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEK 79
           Q   P   FV S GC  N+ DS R+     + GY  V S ++ DL+++NTC   + A ++
Sbjct: 2   QNSTPSIGFV-SLGCPKNLVDSERILTELRTDGYNIVPSYENVDLVIVNTCGFIDSAVQE 60

Query: 80  VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL 139
               +G              +  V+V GC+  A+ ++I    P V  V GP +Y  +   
Sbjct: 61  SLESIGEALE---------ENGRVIVTGCLG-AKEDQIREVHPKVLEVSGPHSYEAVMAQ 110

Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           + +               + +  L +   G        A+L I EGCD  CTFC++P  R
Sbjct: 111 VHKY--------VPKPTHNPYISL-VPKQGVKLTPKHYAYLKISEGCDHRCTFCIIPSMR 161

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-----------GLDGE--KCT 246
           G   SRS++QV+DEA++L + GV E+ ++ Q+ +A+                +G   K  
Sbjct: 162 GDLESRSITQVLDEAKRLAEAGVKELLVVSQDTSAYSMDLKRQEGGVKTAFWNGMPIKND 221

Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306
              L   L ++   VRL Y   +P       + A G    L+PYL +P+Q  S +ILK+M
Sbjct: 222 LMTLCKQLGKLGIWVRLHYVYPYPHVDDLIPLMADGT---LLPYLDIPLQHASPKILKAM 278

Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
            R  +     + I + R + PD+ + S FIVGFPGET++DF+  +D + +    +   FK
Sbjct: 279 KRPGSIDRTLERIKQWREICPDLTLRSTFIVGFPGETEEDFQLLLDFLKEAQLDRVGCFK 338

Query: 367 YSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK- 425
           +SP  G P ++M +QV E+VK ER     +  +E   +     +G+ ++VL+++  ++  
Sbjct: 339 FSPVEGAPATDMADQVPEDVKEERFHRFMQLQQEISANRLKQKIGKTLDVLVDEIDEDGI 398

Query: 426 -GKLVGRSPWLQSVVLNSK----NHNIGDIIKVRITDVKISTLYG 465
            G+    +P +  +V        N  +GD+IKV IT+     L+G
Sbjct: 399 IGRSKADAPEVDGLVYVDNLSRINVKVGDVIKVTITNSDEYDLWG 443


>gi|109898153|ref|YP_661408.1| MiaB-like tRNA modifying enzyme YliG [Pseudoalteromonas atlantica
           T6c]
 gi|123064681|sp|Q15UT4|RIMO_PSEA6 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|109700434|gb|ABG40354.1| SSU ribosomal protein S12P methylthiotransferase [Pseudoalteromonas
           atlantica T6c]
          Length = 473

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 128/465 (27%), Positives = 209/465 (44%), Gaps = 34/465 (7%)

Query: 13  MVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHI 72
           + +          R    S GC  N+ DS R+     ++GY+ VN+ +DADL+++NTC  
Sbjct: 21  IEADKPSTLSTGSRIGFVSLGCPKNLVDSERILTQLRTEGYDVVNTYNDADLVIVNTCGF 80

Query: 73  REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT 132
            + A ++    +G                 V+V GC+   + +EI    P V  + GP  
Sbjct: 81  IDTAVQESLDTIGEALAENGK---------VIVTGCLG-IKEDEIREVHPNVLAITGPHA 130

Query: 133 YYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTF 192
           Y  +   +                        + D G        A+L I EGC+  CTF
Sbjct: 131 YEEVVNQVHEHLP---------QPSYNPYMNLVPDIGVKLTPRHYAYLKISEGCNHRCTF 181

Query: 193 CVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--K 244
           C++P  RG  +SR + +++DEA++L + GV E+ ++ Q+ +A+      +    +G   K
Sbjct: 182 CIIPSMRGDLVSRPIGEILDEAQRLKNAGVKELLVISQDTSAYGVDVKNKMGFWNGMPVK 241

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304
              ++L   L E+   VRL Y   +P       + A      ++PYL +P Q  S RILK
Sbjct: 242 TGMTELCEKLGEMGMWVRLHYVYPYPSVDKVMPLMA---SGKVLPYLDIPFQHASPRILK 298

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
            M R   A    + I + R + P++ I S FIVGFPGET++DF+  +D +D     +   
Sbjct: 299 LMKRPAAAERTMERIKKWRELCPELVIRSTFIVGFPGETEEDFQMLLDFLDDAQLERVGC 358

Query: 365 FKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE 424
           FKYS   G   +++ + V E VK ER     +K ++   +     +G  I+VLI++  +E
Sbjct: 359 FKYSDVEGAKANDLPDPVSEEVKQERFERFMQKQQQISSAKLQRRIGSTIQVLIDEVDEE 418

Query: 425 K--GKLVGRSPWLQS-VVLNSK-NHNIGDIIKVRITDVKISTLYG 465
              G+    +P +   V LN       GDII   +       L+ 
Sbjct: 419 GAIGRSFADAPEIDGLVYLNGDVELKPGDIITATVEHADEYDLWA 463


>gi|303229340|ref|ZP_07316130.1| ribosomal protein S12 methylthiotransferase RimO [Veillonella
           atypica ACS-134-V-Col7a]
 gi|302515876|gb|EFL57828.1| ribosomal protein S12 methylthiotransferase RimO [Veillonella
           atypica ACS-134-V-Col7a]
          Length = 448

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 120/456 (26%), Positives = 211/456 (46%), Gaps = 19/456 (4%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + +     S GC  N+ D+  M  +    GY   +++ +ADLI++NTC   EKA E+  +
Sbjct: 1   MTKSLGYISLGCAKNLVDTEVMLGLLKDDGYTITDNLHEADLIIINTCTFIEKAKEESIN 60

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +      K      G    ++VAGC++Q   +E+    P ++ ++G   + ++   ++ 
Sbjct: 61  TILEAAQYKE----TGRCKGLIVAGCLSQQYQDELFTEIPEIDALIGTGAWDQIMVAVDA 116

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
              G R    +       ER+  +          +A++ I EGC+  CTFC++P  RG  
Sbjct: 117 IEHGNRSCIMENITNIYDERMPRIQ----TTPRYSAYVKIAEGCNNGCTFCIIPKVRGAF 172

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SRS+  +  E  +L  +GV EI L+ Q+  +  G  L+  K   ++LL  L++++G+  
Sbjct: 173 RSRSIESIKAEVERLATSGVKEIVLIAQDTTS-YGIDLNNGKPLLTELLKELTKVEGIEW 231

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R    +P   SD L+    +   L  Y+ +P+Q  ++ ILK MNRR +  +  +++ +I
Sbjct: 232 IRMLYLYPTFFSDELLDIIVNEPKLCKYVDIPLQHVNNDILKQMNRRDSREDIERLLKKI 291

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+    + + +  IVGFPGETD+ F+   + V  I +     F YS   GT      +QV
Sbjct: 292 RNAPTHVTLRTSIIVGFPGETDEQFQELCEFVKDIKFDNMGVFTYSQEEGTIAGAREDQV 351

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-------EKGKLVGRSPWL 435
            E VK ER   L           N    G I   +IE+  +        KG+L  ++P +
Sbjct: 352 PEEVKEERYHTLMSIQAAISEENNRDLEGTIDYAMIEELEEGDNDTVLAKGRLKSQAPDV 411

Query: 436 QSVVLN---SKNHNIGDIIKVRITDVKISTLYGELV 468
              +           GDI++V++       +   +V
Sbjct: 412 DGNMYIEDCGDKVKAGDIVQVQVEQGFAYDVVATIV 447


>gi|297617812|ref|YP_003702971.1| MiaB-like tRNA modifying enzyme [Syntrophothermus lipocalidus DSM
           12680]
 gi|297145649|gb|ADI02406.1| MiaB-like tRNA modifying enzyme [Syntrophothermus lipocalidus DSM
           12680]
          Length = 444

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 133/435 (30%), Positives = 223/435 (51%), Gaps = 15/435 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           +  R  V + GC++N  +S  ++  F   GY+ ++  + AD+ V+NTC +   +  K  +
Sbjct: 3   IKARVTVYTLGCKVNQVESENIKQQFSDYGYQILSGDEVADVYVVNTCAVTHVSERKSRA 62

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            L R +       ++    +VV  GC+AQ     +L   P V++V+G  +  R+ EL++ 
Sbjct: 63  MLRRAK-------RKNPKAVVVATGCLAQVAPN-LLAAMPEVDLVIGNSSKDRIAELVQN 114

Query: 143 AR-FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
            R    + V      ++   R +     Y R R   AF+ IQ+GC+ +C++C+VPY RG 
Sbjct: 115 HRGQSSKAVVVGELSKEPLRRGAWCLPAYERTR---AFVKIQDGCESYCSYCLVPYARGP 171

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
             S+    VV E   L+  G  EI + G +     GK L  +      L   L +++G  
Sbjct: 172 VRSKLPEDVVREIDWLVSAGFKEIVITGIHTGM-YGKDL-ADWDLVRLLETVLVKVQGDY 229

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           RLR ++  P +++  LI+       L  +LH+P+QSGSDR+LK MNRR+T   YR ++  
Sbjct: 230 RLRLSSIEPTEITKKLIELMASEKKLCRHLHIPLQSGSDRVLKLMNRRYTRGFYRDLVMM 289

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +    P  A++SD +VGFP E+++DF  T+ L+D++ +A    F YSPR  T  +++  +
Sbjct: 290 VTGRVPGTAVTSDVMVGFPTESEEDFLDTLKLIDELPFAGLHVFPYSPRPNTAATDLYPR 349

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           V+  VK +R   L K  R +Q  F ++C GQ + VL+E+  KE  +  G +         
Sbjct: 350 VENQVKEQRSKALLKLARHKQQRFIESCSGQTLTVLVEEV-KENSRCEGLTDNYLRAEFY 408

Query: 442 SKNHNIGDIIKVRIT 456
               + G  + VR+ 
Sbjct: 409 GGQLDPGQFVSVRLV 423


>gi|295676480|ref|YP_003605004.1| MiaB-like tRNA modifying enzyme YliG [Burkholderia sp. CCGE1002]
 gi|295436323|gb|ADG15493.1| MiaB-like tRNA modifying enzyme YliG [Burkholderia sp. CCGE1002]
          Length = 480

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 124/486 (25%), Positives = 210/486 (43%), Gaps = 51/486 (10%)

Query: 12  HMVSQIVDQCIVP---QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLN 68
            M S   +    P    +    S GC   + DS ++     ++GYE   + + ADL+V+N
Sbjct: 16  PMSSTPSNAPAAPGATPKVGFVSLGCPKALVDSEQIITQLRAEGYEISGTYNGADLVVVN 75

Query: 69  TCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEE----ILRRSPIV 124
           TC   ++A ++    +G              +  V+V GC+   +       I    P V
Sbjct: 76  TCGFIDEAVQESLDAIGEA---------LNENGKVIVTGCLGAKKSASGSGLIEEVHPKV 126

Query: 125 NVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQE 184
             V GP     + + +                 D F  L     G        A+L I E
Sbjct: 127 LAVTGPHAVGEVMQAVHSHLP---------KPHDPFVDLVPA-AGVKLTPRHYAYLKISE 176

Query: 185 GCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGK 238
           GC+  CTFC++P  RG  +SR +++V+ EA  L  +GV E+ ++ Q+ +A+      R  
Sbjct: 177 GCNHRCTFCIIPSMRGDLVSRPVAEVMLEAENLFKSGVKELLVISQDTSAYGVDVKYRTG 236

Query: 239 GLDGE--KCTFSDLLYSLSEI----KGLVRLRYTTSHPRDMSDCLIKAHGDLD-VLMPYL 291
             +G+  K   +DL+ +L E+       VRL Y   +P       + A G     ++PYL
Sbjct: 237 FWNGKPIKTRMTDLVAALGELAAQYGAWVRLHYVYPYPSVDEVIPMMAAGPYKGHVLPYL 296

Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351
            +P Q     +LK M R   A +  + +   R + PD+ I S FI GFPGET++ F   +
Sbjct: 297 DVPFQHAHPEVLKRMKRPANAEKVMERVKAWREICPDLTIRSTFIAGFPGETEEQFETLL 356

Query: 352 DLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVG 411
           D + +    +   F YSP  G   + +   + + V+ ER     +   +         VG
Sbjct: 357 DFIREAELDRVGCFAYSPVEGASANELDGALPDEVRGERRARFMEVAEQVSAKRIAKKVG 416

Query: 412 QIIEVLIEKHGKEKGKLVGRS----PWLQSVVLNS------KNHNIGDIIKVRITDVKIS 461
           + ++VL+++   + G  +GR+    P +  VV  +      K + +GD + V+IT     
Sbjct: 417 KTLKVLVDEINADGG--IGRTAADAPEIDGVVYIAPSTKASKRYKVGDFVSVKITGADGH 474

Query: 462 TLYGEL 467
            L+GE+
Sbjct: 475 DLWGEV 480


>gi|145629674|ref|ZP_01785471.1| hypothetical protein CGSHi22121_01467 [Haemophilus influenzae
           22.1-21]
 gi|144978185|gb|EDJ87958.1| hypothetical protein CGSHi22121_01467 [Haemophilus influenzae
           22.1-21]
          Length = 445

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 136/465 (29%), Positives = 222/465 (47%), Gaps = 42/465 (9%)

Query: 20  QCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEK 79
           Q   P   FV S GC  N+ DS R+     + GY  V S ++ DL+++NTC   + A ++
Sbjct: 2   QNSTPSIGFV-SLGCPKNLVDSERILTELRTDGYNIVPSYENVDLVIVNTCGFIDSAVQE 60

Query: 80  VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL 139
               +G              +  V+V GC+  A+ ++I    P V  V GP +Y  +   
Sbjct: 61  SLEAIGEALE---------ENGRVIVTGCLG-AKEDQIREVHPKVLEVSGPHSYETVMAQ 110

Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           + +               + +  L +   G        A+L I EGCD  CTFC++P  R
Sbjct: 111 VHKY--------VSKPTHNPYTSL-VPKQGVKLTPKHYAYLKISEGCDHRCTFCIIPSMR 161

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-----------GLDGE--KCT 246
           G   SRS++QV+DEA++L + GV E+ ++ Q+ +A+                +G   K  
Sbjct: 162 GDLESRSITQVLDEAKRLAEAGVKELLVVSQDTSAYSMDLKRQEGGVKTAFWNGMPIKND 221

Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306
              L   L ++   VRL Y   +P       + A G    L+PYL +P+Q  S +ILK+M
Sbjct: 222 LMTLCKQLGKLGIWVRLHYVYPYPHVDDLIPLMADGT---LLPYLDIPLQHASPKILKAM 278

Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
            R  +     + I + R + PD+ + S FIVGFPGET++DF+  +D + +    +   FK
Sbjct: 279 KRPGSIDRTLERIKQWREICPDLTLRSTFIVGFPGETEEDFQLLLDFLKEAQLDRVGCFK 338

Query: 367 YSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK- 425
           +SP  G P + M +QV E+VK ER     +  +E   +     +G+ ++VL+++  +E  
Sbjct: 339 FSPVEGAPATEMADQVPEDVKEERFHRFMQLQQEISANRLKQKIGKTLDVLVDEIDEEGI 398

Query: 426 -GKLVGRSPWLQSVVLNSK----NHNIGDIIKVRITDVKISTLYG 465
            G+    +P +  +V        N  +GD+IKV IT+     L+G
Sbjct: 399 IGRSKADAPEVDGLVYVDNLSGINVKVGDVIKVTITNSDEYDLWG 443


>gi|253681883|ref|ZP_04862680.1| conserved hypothetical protein [Clostridium botulinum D str. 1873]
 gi|253561595|gb|EES91047.1| conserved hypothetical protein [Clostridium botulinum D str. 1873]
          Length = 444

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 126/449 (28%), Positives = 226/449 (50%), Gaps = 22/449 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +  + S GC  N  DS  +         E VN+ ++AD+I++NTC   E + ++    + 
Sbjct: 5   KIGLISLGCDKNRIDSELLLGKLNENN-EIVNNPNEADIIIVNTCGFIETSKQESIDTII 63

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +   K+   K      ++  GC+ Q   +E+ +  P +++++G   Y  + + ++    
Sbjct: 64  EMAQYKDKNCKM-----IIATGCLTQRYSKELQQLIPEIDIMLGVNDYANIQDYIDEFFE 118

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGY-NRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            K  +      + K+  +SI +G          A++ I EGCD FCT+C++P  RG   S
Sbjct: 119 NKNKI-----CKCKYSDVSINEGKRILTTDKHVAYIRISEGCDNFCTYCIIPKIRGKYRS 173

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           RS+  +V EA++L   GV E+ L+GQ+  A  G+ +  E     DL+ ++SEI+ +  +R
Sbjct: 174 RSIDSIVKEAKELSAMGVKELILVGQDT-AIYGRDIYSE-NKLPDLIRAISEIESIEWIR 231

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
              ++P +++D LI+   + D +  YL +P+Q  S+ +LK MNRR T     + I ++R+
Sbjct: 232 VLYTYPEEITDELIEEIKNNDKVCNYLDIPIQHVSNTVLKRMNRRSTKEIISENIRKMRN 291

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
              D+ + +  IVGFPGET+D+F    + + +I +     FKYS    T  + M +Q+ E
Sbjct: 292 EIKDLCLRTSIIVGFPGETEDEFNELKEFIKEIKFDNLGVFKYSQEEDTAAARMKDQISE 351

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVVL 440
            +K  RL  L    ++     N   + ++ +VLIE H  E    +GR    +P +   + 
Sbjct: 352 EIKESRLEELMIIQQQVSKEKNKNKIRKVYKVLIEGHNDE--YWIGRNYQMTPEIDGAIF 409

Query: 441 NSKN--HNIGDIIKVRITDVKISTLYGEL 467
              +   N+G+ I ++ITD     L G +
Sbjct: 410 FKCDKILNVGEFIYIKITDALEYDLIGVV 438


>gi|325923369|ref|ZP_08185039.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Xanthomonas
           gardneri ATCC 19865]
 gi|325546139|gb|EGD17323.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Xanthomonas
           gardneri ATCC 19865]
          Length = 457

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 132/458 (28%), Positives = 211/458 (46%), Gaps = 39/458 (8%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC   + DS R+      +GY+ V S D AD++V+NTC   + A  +    +G
Sbjct: 7   KVGFVSLGCPKALVDSERILTQLRVEGYDIVPSYDAADVVVVNTCGFIDSAVTESLDAIG 66

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                         +  V+V GC+ +   E+I    P V  V GPQ Y  + E +  A  
Sbjct: 67  EA---------MNANGKVIVTGCLGKR-PEQIREAYPQVLAVSGPQDYQSVMEAVHAALP 116

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            +          D F  L + D G        A+L I EGC+  C+FC++P  RG   SR
Sbjct: 117 PR---------HDPFVDL-VPDYGIKLTPRHYAYLKISEGCNHRCSFCIIPSMRGDLASR 166

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSD---------LLYSLSE 256
            + +V+ EA +L+  GV E+ ++ Q+ +A  G  L   +  + D         L   LSE
Sbjct: 167 PVDEVLREAERLVRGGVKELLVVSQDTSA-YGVDLKYAERPWRDRMYQTRMKALCEGLSE 225

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           +    RL Y   +P       + A G    L+PYL +P Q  S RILK M R     +  
Sbjct: 226 LGVWTRLHYVYPYPHVDDVIPLMAEG---KLLPYLDIPFQHASPRILKLMKRPGAVEKTL 282

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
           + + R +++ P+I + S FIVGFPGETD +F + +D +D+    +  +F YSP  G   +
Sbjct: 283 ERVQRWKAMCPEITVRSTFIVGFPGETDAEFESLLDFLDQAQLDRVGAFAYSPVQGASAN 342

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE--KHGKEKGKLVGRSPW 434
            + + V E +K ERL     K  E   +  +A +G + + L++  +      +    +P 
Sbjct: 343 ALPDPVPEELKQERLARFMAKQAEISAARLEAKIGSVQQCLVDVIEDDIAVARSRADAPE 402

Query: 435 LQS-VVLNSKNHN---IGDIIKVRITDVKISTLYGELV 468
           +   V + +       IGD++ V ITD     L+G+ +
Sbjct: 403 IDGLVHIQNGGELGLKIGDLVDVEITDSDEHDLFGDAL 440


>gi|218666627|ref|YP_002424637.1| MiaB-like tRNA modifying enzyme YliG, putative [Acidithiobacillus
           ferrooxidans ATCC 23270]
 gi|238065273|sp|B7J3M4|RIMO_ACIF2 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|218518840|gb|ACK79426.1| MiaB-like tRNA modifying enzyme YliG, putative [Acidithiobacillus
           ferrooxidans ATCC 23270]
          Length = 446

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 135/461 (29%), Positives = 201/461 (43%), Gaps = 38/461 (8%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
            P +    S GC     DS R+     ++GY  V    +AD++V+NTC   + A E+   
Sbjct: 7   TPPKVGFVSLGCPKATVDSERILTQLRAEGYLLVGDYANADVVVVNTCGFIDAAVEESLE 66

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG-EEILRRSPIVNVVVGPQTYYRLPELLE 141
            +G   +             VVV GC+   EG + +    P V  V GP     + + + 
Sbjct: 67  AIGEALDENGK---------VVVTGCLGAREGGDFVRGAHPKVLAVTGPNQAGAVLDAIH 117

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
            A              D +  L +   G        A+L I EGC++ C+FC++P  RG 
Sbjct: 118 AALP---------PAHDPYTDL-VPPQGLRLTPPHYAYLKISEGCNQSCSFCIIPSMRGK 167

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYS 253
            +SR+   ++ EA  L+  G  E+ ++ Q+  A+      R    +G   K   +DL  +
Sbjct: 168 LVSRAPDDILREAEALVAGGAKELLVISQDTGAYGVDRKYRTAFHNGRPLKTRITDLCAA 227

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
           L E+   VRL Y   +P    D L+    +   ++PYL +P+Q GS RILK+M R   A 
Sbjct: 228 LGELGVWVRLHYVYPYPH--IDELLPLMAE-GKILPYLDVPLQHGSPRILKAMRRPAAAE 284

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
           +    I   R   PD+ I S FIVGFPGETD DF   +D +      +   F YS   G 
Sbjct: 285 KTLDRILGWRQAVPDLIIRSTFIVGFPGETDADFAELLDFLRAAELDRVGCFAYSAVEGA 344

Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS- 432
           P + +   V E VK ER                   VGQ   VL++   +  G+++ RS 
Sbjct: 345 PANAIAGAVPEPVKEERRAAFMAVQEAISRQRLQRRVGQRQRVLVDAMAR-GGRVIARSA 403

Query: 433 ---PWLQSVVLNSK--NHNIGDIIKVRITDVKISTLYGELV 468
              P +  VV   K     +GD ++V IT      LYG +V
Sbjct: 404 SDAPEIDGVVHLGKAAGLQVGDWVEVAITRADAHDLYGMVV 444


>gi|319953952|ref|YP_004165219.1| ssu ribosomal protein s12p methylthiotransferase [Cellulophaga
           algicola DSM 14237]
 gi|319422612|gb|ADV49721.1| SSU ribosomal protein S12P methylthiotransferase [Cellulophaga
           algicola DSM 14237]
          Length = 433

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 124/459 (27%), Positives = 221/459 (48%), Gaps = 33/459 (7%)

Query: 17  IVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA 76
           +  + +   +  V + GC  NVYDS  +     +   + V+  +  +++V+NTC   + A
Sbjct: 1   MRTKTLKKNKINVVTLGCSKNVYDSEILMGQLKANKKDVVHEGEG-NIVVINTCGFIKNA 59

Query: 77  AEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL 136
            E+  + +      K +    G    V V GC+++    ++ +  P V+   G      L
Sbjct: 60  KEESVNTILEFVQKKEA----GIVDKVFVTGCLSERYKPDLQKEIPNVDEYFGT---TEL 112

Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
           P LL       + +  DY  E   ERL+     Y       A+L I EGCD+ C+FC +P
Sbjct: 113 PGLL-------KALGADYKHELIGERLTTTPKNY-------AYLKIAEGCDRPCSFCAIP 158

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256
             RG   S  +  +V EA KL  NGV E+ L+ Q++  + G  +  +K   ++LL +L +
Sbjct: 159 IMRGKHKSTPIENLVIEAEKLAANGVKELILIAQDLT-YYGLDIY-KKRNLAELLEALVK 216

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           + G+  +R   + P      ++        +  YL +P+Q  SD ILKSM R  T  +  
Sbjct: 217 VDGIEWIRLHYAFPTGFPMDVLALMKKEPKICNYLDIPLQHISDAILKSMRRGTTKEKTT 276

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
           +++   R++ P++AI +  IVG+PGET++DF+     V+++ + +   F YS    T   
Sbjct: 277 KLLYDFRALVPEMAIRTTLIVGYPGETEEDFQTLKAWVEEMRFERLGCFTYSHEENTHAY 336

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS---- 432
            +++ V E+VK ER   + +   +     N   VGQ +  ++++  KE    +GR+    
Sbjct: 337 TLVDDVPEDVKQERASQIMEIQSQISWELNQEKVGQTLRCIVDR--KEGPHFIGRTEFDS 394

Query: 433 PWLQS-VVLNSKN--HNIGDIIKVRITDVKISTLYGELV 468
           P + + V++++      +GD + + IT+     LYGE V
Sbjct: 395 PDVDNEVLIDASKFYLKVGDFVNINITEAADFDLYGEPV 433


>gi|297617227|ref|YP_003702386.1| MiaB-like tRNA modifying enzyme YliG [Syntrophothermus lipocalidus
           DSM 12680]
 gi|297145064|gb|ADI01821.1| MiaB-like tRNA modifying enzyme YliG [Syntrophothermus lipocalidus
           DSM 12680]
          Length = 442

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 120/452 (26%), Positives = 211/452 (46%), Gaps = 17/452 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           +  R    S GC  N  D+  M  +   +GY  VN MD AD++++NTC     A E+  +
Sbjct: 1   MKARVGFISLGCPKNRVDTEVMLGLLKREGYLVVNKMDQADIVIVNTCGFVTPAKEEAIN 60

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            L  +  LK+     G    ++  GC+ Q    E+    P ++ +VG   + R+ E++ R
Sbjct: 61  TLLEVALLKDK----GNVKKIIATGCLVQRYARELQEEIPEIDALVGVSDFVRIAEVVAR 116

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            + G+R            E    V            +L I EGCD  C++C +P  RG  
Sbjct: 117 VQTGERCCLVGELSNRFRESGPRV----LSTPPGWVYLKIAEGCDNRCSYCAIPLIRGPF 172

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR LS +++EA+KL   G+ E+ L+ Q+     G+ L+ +  + + LL +LS I+G+  
Sbjct: 173 RSRPLSDILEEAQKLAGLGIKELVLVAQDTTM-YGQDLE-KNLSLALLLQNLSRIEGIEW 230

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R   +HP  ++  +++  G    ++PYL LP+Q   D +LK M R ++      +I+ +
Sbjct: 231 IRVMYAHPLHVTPEMVEVIGREPGVIPYLDLPIQHADDSVLKRMGRGYSRSYLVSLIEDL 290

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R   P + + +  +VGFPGE++  F      V + G+    +F YS   GT  +   + V
Sbjct: 291 RRRLPGLVLRTTVMVGFPGESESSFENLCSFVKETGFDWLGAFMYSEEEGTAAARWEDDV 350

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSV 438
            E  K  R   + +         N    G++ ++L+E      G   GR    +P +  +
Sbjct: 351 LEEEKQRRWREIMRMQSAITSELNRRRTGKVEQILVEGCTG-PGVYWGRGYYQAPEVDGI 409

Query: 439 VL--NSKNHNIGDIIKVRITDVKISTLYGELV 468
            +  ++K   +G ++  R+ D K   +  E+V
Sbjct: 410 TILKSAKPLQVGQMVNARLVDSKGYDVTAEVV 441


>gi|126642021|ref|YP_001085005.1| hypothetical protein A1S_1976 [Acinetobacter baumannii ATCC 17978]
 gi|169633328|ref|YP_001707064.1| hypothetical protein ABSDF1679 [Acinetobacter baumannii SDF]
 gi|184158419|ref|YP_001846758.1| ribosomal protein S12 methylthiotransferase [Acinetobacter
           baumannii ACICU]
 gi|239501620|ref|ZP_04660930.1| 2-methylthioadenine synthetase [Acinetobacter baumannii AB900]
 gi|260551686|ref|ZP_05825760.1| 2-methylthioadenine synthetase [Acinetobacter sp. RUH2624]
 gi|332873910|ref|ZP_08441850.1| ribosomal protein S12 methylthiotransferase RimO [Acinetobacter
           baumannii 6014059]
 gi|238065268|sp|B2I330|RIMO_ACIBC RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|238065269|sp|B0VMU3|RIMO_ACIBS RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|238065270|sp|A3M659|RIMO_ACIBT RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|126387905|gb|ABO12403.1| hypothetical protein A1S_1976 [Acinetobacter baumannii ATCC 17978]
 gi|169152120|emb|CAP01019.1| conserved hypothetical protein [Acinetobacter baumannii]
 gi|183210013|gb|ACC57411.1| 2-methylthioadenine synthetase [Acinetobacter baumannii ACICU]
 gi|260405429|gb|EEW98923.1| 2-methylthioadenine synthetase [Acinetobacter sp. RUH2624]
 gi|322508743|gb|ADX04197.1| Putative uncharacterized protein [Acinetobacter baumannii 1656-2]
 gi|323518348|gb|ADX92729.1| ribosomal protein S12 methylthiotransferase [Acinetobacter
           baumannii TCDC-AB0715]
 gi|332737896|gb|EGJ68783.1| ribosomal protein S12 methylthiotransferase RimO [Acinetobacter
           baumannii 6014059]
          Length = 447

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 124/459 (27%), Positives = 207/459 (45%), Gaps = 37/459 (8%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC   + DS R+     ++GY+  +  D ADL+V+NTC   E A ++    +G
Sbjct: 5   KVGFVSLGCPKALVDSERILTQLKTEGYQVASDYDGADLVVVNTCGFIESAVQESLDAIG 64

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                         +  V+V GC+   + ++I +  P V  V G   Y  + E +     
Sbjct: 65  EA---------MSENGRVIVTGCLG-KDEDKIRQMHPNVLKVTGAAAYQDVMEAVHEY-- 112

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                      +       + + G        A+L I EGC+  CTFC++P  RG  +SR
Sbjct: 113 ------VPAPPKHNPFIDLVPEQGIRLTPKHYAYLKISEGCNHRCTFCIIPSMRGDLVSR 166

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYSLSEI 257
            +  V++EA  L   GV EI ++ Q+ +A+      +    +G+  K  F D+  +L ++
Sbjct: 167 PVGSVLEEAAALKRAGVKEILVISQDTSAYGVDTKYKLDFWNGQPVKTKFFDMCEALGQL 226

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
              VRL Y   +P   +   + A G    ++PYL +P Q  S R+LK M R   +    +
Sbjct: 227 GIWVRLHYVYPYPHVDAVIDLMAQG---KILPYLDIPFQHASPRVLKLMKRPAHSENTLE 283

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
            I   R   PD+ I S F+VGFPGET++DF+  +D + +    +   F YSP  G   ++
Sbjct: 284 KIKLWREKCPDLVIRSTFVVGFPGETEEDFQILLDWLVEAQLDRVGCFTYSPVEGATAND 343

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----P 433
           + + V E +K ER     +  ++   +     +GQ + VL++    E    V RS    P
Sbjct: 344 LPDHVPEEIKQERYERFMQVQQQISAAKLQKRIGQTMTVLVDSLEDEYPVAVARSYADAP 403

Query: 434 WLQSVVL----NSKNHNIGDIIKVRITDVKISTLYGELV 468
            +   V     +      GD+++V ITD     L+ +L+
Sbjct: 404 EIDGNVFVEDIDKSTIQPGDMLEVEITDADEYDLFAKLI 442


>gi|325183820|emb|CCA18278.1| CDK5 regulatory subunitassociated protein 1 putativ [Albugo
           laibachii Nc14]
 gi|325183990|emb|CCA18448.1| CDK5 regulatory subunitassociated protein 1 putativ [Albugo
           laibachii Nc14]
          Length = 639

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 145/522 (27%), Positives = 245/522 (46%), Gaps = 80/522 (15%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + F++++YGCQMN  DS  +  +    GY+   + +DAD+I+LNTC IRE A  K+++ L
Sbjct: 95  KNFYIETYGCQMNTADSEIVHAILVKNGYQLAKNPEDADVILLNTCAIRENAESKIWNRL 154

Query: 85  GRIRNLKNSRIKE----GGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140
            + R +K   ++          V V GC+A+    ++L    +V++VVGP  Y  LP LL
Sbjct: 155 EQWRQIKVKLLRHKSTRNHLPTVGVLGCMAERLKTKLLECDKMVDLVVGPDAYRDLPNLL 214

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           +  R G+  V+   S+++ +  +  V          +AF++I  GC+  C++C+VP+TRG
Sbjct: 215 QVVRGGQSAVNVQLSLDETYAGIVPVRSD---PSNPSAFVSIMRGCNNMCSYCIVPFTRG 271

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-------------GLDGEKC-- 245
            E S  L  ++ E + L D GV EI LLGQNVN++  K               +G K   
Sbjct: 272 RERSCELESIISEVKSLRDQGVKEIMLLGQNVNSYHDKQSQQAQEKGRAYVSANGFKNMF 331

Query: 246 --------TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQS 297
                    F D+L  +S++   +R+R+T+ HP+D  D ++    +   +   +H+P QS
Sbjct: 332 KARNATGFRFVDVLDHVSQVDSEMRIRFTSPHPKDFPDDVLDLIQERHNICNSVHMPAQS 391

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
           GS  +L+ M R ++   Y  + + +R+  P ++ISSDFI GF GET+++ + T+ L+ ++
Sbjct: 392 GSTTVLERMRRGYSREAYLALAENMRTRIPGVSISSDFITGFCGETEEEHQDTLTLIQRV 451

Query: 358 GYAQAFSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFN-DACVGQIIE 415
            + QAF F YS R  T  +  M + V + VK  RL  +  +        N      ++  
Sbjct: 452 CFDQAFMFTYSLRAKTHAAHRMEDNVPQEVKLRRLKEIIDEFSSIVTRKNLAENSDRLHV 511

Query: 416 VLIEKHGK----EKGKLVGRSPWLQSVVLNS----------------------------- 442
           VL++   +    E  KL G +   +  V                                
Sbjct: 512 VLVQGASRRSTDENPKLTGLTDTNKRCVFPDVMMPTSLQRYRELKSMHCAGHSGSQDLNH 571

Query: 443 -KNHNI--------------GDIIKVRITDVKISTLYGELVV 469
               +               GD + VRI +   +TL+   + 
Sbjct: 572 PDGLSPIDMPLGVNGVRAAQGDYVLVRIHEAGRATLHATPIA 613


>gi|300813542|ref|ZP_07093873.1| MiaB-like protein [Peptoniphilus sp. oral taxon 836 str. F0141]
 gi|300512290|gb|EFK39459.1| MiaB-like protein [Peptoniphilus sp. oral taxon 836 str. F0141]
          Length = 431

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 131/449 (29%), Positives = 242/449 (53%), Gaps = 21/449 (4%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDD-ADLIVLNTCHIREKAAEKVY 81
           + + F + + GC++N Y+S  M ++F   GY +V++  D AD+ ++NTC +   +  K  
Sbjct: 1   MAKTFSILTLGCKVNQYESEAMAELFEKNGYIQVDNDTDVADVYIVNTCTVTNLSDRKSR 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
            ++ R +       +E  D  V V GC AQ   +E+  +   V+VV+G     ++ +L+E
Sbjct: 61  QYIRRAK-------RENPDSTVAVVGCYAQVAPKEV-EKIEGVDVVIGTSERSKIVDLIE 112

Query: 142 RARFGKRVVDT--DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
            A+   + ++   D   +  F+ + I +  +  +    +++ +Q+GC+++CT+C++PY R
Sbjct: 113 EAKEEDKKINIVRDIKKDRDFQFIKIDENFHKTR----SYMKVQDGCNRYCTYCIIPYAR 168

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G   SR +   V EA +L + G  EI L G +V ++   G+D       DL+ +++E+ G
Sbjct: 169 GTIRSRRIGDCVREAIRLANAGYKEIILTGIHVGSY---GVDLGPVRLIDLIEAIAEVDG 225

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           + R+R ++  P  +S+  ++       L  + HL +QSGS+++LK MNR +   E+ +  
Sbjct: 226 IERIRLSSVEPNIISEDFMRRAIACSKLCDHFHLSLQSGSNKVLKDMNRHYNREEFIEKT 285

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
             I+   P   +++D IVGFPGE+D+DF  +M +V ++ +++   FKYS R  TP ++  
Sbjct: 286 KIIKKYMPYAGLTTDIIVGFPGESDEDFEDSMSIVREVEFSKVHVFKYSKRKNTPAADRA 345

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV 439
           +QVD N+K +R   L K   +    F +  + + ++VL E+   ++G   G +     V 
Sbjct: 346 DQVDGNIKIKRSEELIKLQDQYLKKFREKNMPRTLKVLFEEF--DQGYYFGYTDNYIRVK 403

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
           + S    I  I+ VR+ D +   L GELV
Sbjct: 404 VKSDKDLINKILDVRLVDNEEVAL-GELV 431


>gi|145639398|ref|ZP_01795003.1| hypothetical protein CGSHiII_04472 [Haemophilus influenzae PittII]
 gi|145271445|gb|EDK11357.1| hypothetical protein CGSHiII_04472 [Haemophilus influenzae PittII]
 gi|309751757|gb|ADO81741.1| Ribosomal protein S12 methylthiotransferase [Haemophilus influenzae
           R2866]
          Length = 445

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 135/465 (29%), Positives = 222/465 (47%), Gaps = 42/465 (9%)

Query: 20  QCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEK 79
           Q   P   FV S GC  N+ DS R+     + GY  V S ++ DL+++NTC   + A ++
Sbjct: 2   QNSTPSIGFV-SLGCPKNLVDSERILTELRTDGYNIVPSYENVDLVIVNTCGFIDSAVQE 60

Query: 80  VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL 139
               +G              +  V+V GC+  A+ ++I    P V  V GP +Y  +   
Sbjct: 61  SLEAIGEALE---------ENGRVIVTGCLG-AKEDQIREVHPKVLEVSGPHSYETVMAQ 110

Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           + +               + +  L +   G        A+L I EGCD  CTFC++P  R
Sbjct: 111 VHKY--------VSKPTHNPYTSL-VPKQGVKLTPKHYAYLKISEGCDHRCTFCIIPSMR 161

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-----------GLDGE--KCT 246
           G   SRS++QV+DEA++L + GV E+ ++ Q+ +A+                +G   K  
Sbjct: 162 GDLESRSITQVLDEAKRLAEAGVKELLVVSQDTSAYSMDLKRQVGGVKTAFWNGMPIKND 221

Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306
              L   L ++   VRL Y   +P       + A G    L+PYL +P+Q  S +ILK+M
Sbjct: 222 LMTLCKQLGKLGIWVRLHYVYPYPHVDDLIPLMADGT---LLPYLDIPLQHASPKILKAM 278

Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
            R  +     + I + R + P++ + S FIVGFPGET++DF+  +D + +    +   FK
Sbjct: 279 KRPGSIDRTLERIKQWREICPNLTLRSTFIVGFPGETEEDFQLLLDFLKEAQLDRVGCFK 338

Query: 367 YSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK- 425
           +SP  G P + M +QV E+VK ER     +  +E   +     +G+ ++VL+++  +E  
Sbjct: 339 FSPVEGAPATEMADQVPEDVKEERFHRFMQLQQEISANRLKQKIGKTLDVLVDEIDEEGI 398

Query: 426 -GKLVGRSPWLQSVVLNSK----NHNIGDIIKVRITDVKISTLYG 465
            G+    +P +  +V        N  +GD+IKV IT+     L+G
Sbjct: 399 IGRSKADAPEVDGLVYVDNLSGINVKVGDVIKVTITNSDAYDLWG 443


>gi|238066632|sp|A1S2T9|RIMO_SHEAM RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
          Length = 474

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 137/468 (29%), Positives = 211/468 (45%), Gaps = 36/468 (7%)

Query: 15  SQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIRE 74
           ++  D  I   R    S GC  N+ DS R+       GYE  NS D+ADL+++NTC   +
Sbjct: 27  AKASDGTIQGNRIGFVSLGCPKNLVDSERILTQLRIDGYEVTNSYDNADLVIVNTCGFID 86

Query: 75  KAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYY 134
            A E+    +                  V+V GC+  A+  +I    P V  + GP +Y 
Sbjct: 87  AAVEESLDAVREALEENGK---------VIVTGCLG-AKENQIREVHPDVLEITGPHSYE 136

Query: 135 RLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCV 194
            +   + +               + F  L I   G        A+L I EGCD  CTFC+
Sbjct: 137 AVLNHVHKY--------VPKPEHNPFTSL-IPQTGVKLTPKHYAYLKISEGCDNRCTFCI 187

Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE---------KC 245
           +P  RG   SR +  V+DEA++L+++GV EI ++ Q+ +A  GK  DG          K 
Sbjct: 188 IPALRGDLDSRGVGSVLDEAKRLVESGVQEILVVSQDTSA-YGKDKDGRTDFWNGMPVKQ 246

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
             + L   L ++   VRL Y   +P       + A G   +++PYL LP+Q  S R+LK 
Sbjct: 247 DITSLARQLGKMGAWVRLHYVYPYPWVDDLIPLMAEG---LILPYLDLPLQHASPRVLKM 303

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           M R          I + R + PD+ I S FIVGFPGET++DF   +D + +    +   F
Sbjct: 304 MKRPGRVDRQLDAIKKWREICPDLVIRSTFIVGFPGETEEDFEMLLDFLREARLDRVGCF 363

Query: 366 KYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK 425
           KYS   G   + + E + E VK +R     +   E         VG+ +++LI+   +E 
Sbjct: 364 KYSEVDGAVANTLAELISEEVKEDRYERFMEVQAEISAERLARLVGRELDILIDDVDEEG 423

Query: 426 --GKLVGRSPWLQSVVLNSK--NHNIGDIIKVRITDVKISTLYGELVV 469
             G+    +P +  +V  +       GD+++ RI       L+ ELV 
Sbjct: 424 AIGRSYADAPEIDGMVFINGETELTPGDMVRARIVASDEHDLWAELVA 471


>gi|295133112|ref|YP_003583788.1| radical SAM superfamily protein, UPF0004 [Zunongwangia profunda
           SM-A87]
 gi|294981127|gb|ADF51592.1| radical SAM superfamily protein, UPF0004 [Zunongwangia profunda
           SM-A87]
          Length = 449

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 123/459 (26%), Positives = 219/459 (47%), Gaps = 33/459 (7%)

Query: 17  IVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA 76
           +  + +   R  V + GC  NVYDS  +     +   + V+  ++ +++V+NTC   + A
Sbjct: 1   MRTKSLKKNRINVVTLGCSKNVYDSEVLMGQLKANNKDVVH-EEEGNIVVINTCGFIDNA 59

Query: 77  AEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL 136
            E+  + +      K      G    V V GC+++    ++ +  P V+   G      L
Sbjct: 60  KEQSVNTILEFVAKKEQ----GDVDKVFVTGCLSERYKPDLQKEIPNVDQYFGT---TEL 112

Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
           P LL       + ++ DY  E   ERL+     Y       A+L I EGCD+ C+FC +P
Sbjct: 113 PGLL-------KALEADYKHELIGERLTTTPKNY-------AYLKIAEGCDRPCSFCAIP 158

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256
             RG   S  +  +V EA+KL  NGV E+ L+ Q++  + G  L  +K   ++LL +L +
Sbjct: 159 LMRGGHKSTPIENLVTEAKKLAANGVKELILIAQDLT-YYGLDLY-KKRNLAELLENLVK 216

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           ++G+  +R   + P      +++       +  YL +P+Q  SD +LKSM R  T  +  
Sbjct: 217 VEGIEWIRLHYAFPTGFPMDVLEVMKREPKICNYLDIPLQHISDDLLKSMRRGTTHKKTT 276

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
            ++ + R   P++AI +  IVG+PGET+  F+   + V ++ + +   F YS    T   
Sbjct: 277 DLLYKFRETVPEMAIRTTLIVGYPGETEAHFQELKEWVKEMRFERLGCFTYSHEENTHAY 336

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS---- 432
           N+ + V + VK ER   + +   +     N   +GQ  +V+I++  KE    +GR+    
Sbjct: 337 NLEDDVPDEVKQERANEIMEIQSQISWELNQQKIGQTFKVIIDR--KEGNYFIGRTEFDS 394

Query: 433 PWLQS-VVLNSKN--HNIGDIIKVRITDVKISTLYGELV 468
           P + + V++++       G+   ++ITD     LYG  +
Sbjct: 395 PDVDNEVLIDAAEIYLKTGEYYDIKITDAADFDLYGTPL 433


>gi|325928882|ref|ZP_08190045.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Xanthomonas
           perforans 91-118]
 gi|325540743|gb|EGD12322.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Xanthomonas
           perforans 91-118]
          Length = 458

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 131/458 (28%), Positives = 212/458 (46%), Gaps = 39/458 (8%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC   + DS R+      +GY+ V S D AD++V+NTC   + A  +    +G
Sbjct: 7   KVGFVSLGCPKALVDSERILTQLRVEGYDIVPSYDAADVVVVNTCGFIDSAVTESLDAIG 66

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                         +  V+V GC+ +   E+I    P V  V GPQ Y  + E +  A  
Sbjct: 67  EA---------MNANGKVIVTGCLGKR-PEQIREAYPQVLAVSGPQDYQSVMEAVHAALP 116

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            +          D F  L + D G        A+L I EGC+  C+FC++P  RG  +SR
Sbjct: 117 PR---------HDPFVDL-VPDYGIKLTPRHYAYLKISEGCNHRCSFCIIPSMRGDLVSR 166

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSD---------LLYSLSE 256
            + +V+ EA +L+  GV E+ ++ Q+ +A  G  L   +  + D         L   LSE
Sbjct: 167 PVDEVLREAERLVRGGVKELLVVSQDTSA-YGVDLKYAERPWRDRMYQTRMKALCEGLSE 225

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           +    RL Y   +P       + A G    L+PYL +P Q  S RILK M R     +  
Sbjct: 226 LGVWTRLHYVYPYPHVDDVIGLMAEG---KLLPYLDIPFQHASPRILKLMKRPGAVEKTL 282

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
           + + R +++ P+I + S FIVGFPGETD +F + +D +D+    +  +F YSP  G   +
Sbjct: 283 ERVQRWKAMCPEITVRSTFIVGFPGETDAEFESLLDFLDQAQLDRVGAFAYSPVDGASAN 342

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE--KHGKEKGKLVGRSPW 434
            + +QV E VK ERL     K  +      ++ +G + + L++  +      +    +P 
Sbjct: 343 ALPDQVPEEVKHERLARFMAKQAQISALRLESKIGSVQQCLVDVIEDDIAVARSRADAPE 402

Query: 435 LQS-VVLNSKNHN---IGDIIKVRITDVKISTLYGELV 468
           +   V + +       +GD++ V ITD     L+G+ +
Sbjct: 403 IDGLVHIQNGGELGLKVGDLVDVEITDSDEHDLFGDAL 440


>gi|15894568|ref|NP_347917.1| Fe-S oxidoreductase [Clostridium acetobutylicum ATCC 824]
 gi|15024215|gb|AAK79257.1|AE007641_3 Fe-S oxidoreductases [Clostridium acetobutylicum ATCC 824]
 gi|325508700|gb|ADZ20336.1| Fe-S oxidoreductase [Clostridium acetobutylicum EA 2018]
          Length = 436

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 137/447 (30%), Positives = 236/447 (52%), Gaps = 17/447 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    + GC++N Y+S  M + F   G+E V++ + AD  V+NTC +      K    + 
Sbjct: 2   KVAFITLGCRVNSYESEAMAEKFIKSGWEIVDNDEKADAYVINTCTVTNMGDRKSRQMIS 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER--A 143
           R R       K   D ++   GC +Q E E++      V++V+G +    +   + +   
Sbjct: 62  RAR-------KANKDAVIAAVGCYSQVEPEKVA-EIEGVDIVLGTKNKGDIIHYVNKFIE 113

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
              + V   D   + KFE L+I +     +    AFL IQ+GC++FC++C++PY RG   
Sbjct: 114 ERNQIVNVKDVFTDKKFEDLNIDEY----QDKTRAFLKIQDGCNRFCSYCLIPYARGGVC 169

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           S++  +V+ E ++L ++G  EI L G ++ A  G  L G+      ++    +I G+ R+
Sbjct: 170 SKNPEKVIGEIKRLAEHGFKEIILSGIHI-ASYGDDLKGD-WNLISIIEKAEQIDGIERI 227

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R  +  PR   +  I    ++  + P+ HL +QSG    L+ MNR++TA EY++I+ ++R
Sbjct: 228 RIGSIEPRFFDEDTISKIKNMKKMCPHFHLSLQSGCTETLERMNRKYTAEEYKEIVYKLR 287

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
               D++I++D IVGFPGETD++F  T D + +I  A+   FKYSPR GT  + M  Q++
Sbjct: 288 ENISDVSITTDVIVGFPGETDEEFEKTYDFLKEIELAKMHVFKYSPREGTKAAAMKNQIN 347

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNS 442
            NVK +R   L +  +  +  F    + + ++VL EK  +E      G +P    VV+ S
Sbjct: 348 GNVKDKRSAELIELDKINEKKFMSKFLDREMDVLFEKKLEENEDLYEGYTPNYIKVVVKS 407

Query: 443 KNHNIGDIIKVRITDVKISTLYGELVV 469
                  I+KV++T+++   L GEL++
Sbjct: 408 SEDISRKILKVKLTEIQDEHLLGELIL 434


>gi|320102495|ref|YP_004178086.1| 30S ribosomal protein S12P methylthiotransferase [Isosphaera
           pallida ATCC 43644]
 gi|319749777|gb|ADV61537.1| SSU ribosomal protein S12P methylthiotransferase [Isosphaera
           pallida ATCC 43644]
          Length = 489

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 129/458 (28%), Positives = 225/458 (49%), Gaps = 26/458 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
            F   + GC  N+ DS RM  +    GY  V   +  DL+++NTC   E A ++  + + 
Sbjct: 12  TFSFVTLGCAKNLVDSERMLGLLSQDGYALVPEGEPCDLVIVNTCGFIEPARKESMAVIH 71

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            + + K +    G    V+VAGC+A+   EE+L + P ++ V+G     ++ +  +R   
Sbjct: 72  ELLDRKRA----GTVKGVIVAGCLAERNREELLDQVPEIDQVIGVFGREQIVQAADRVLG 127

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G  +V+          +  I            A+L + EGCD+ CTFC +P  RG  +++
Sbjct: 128 G--LVEQRTIFNPAPIQAQIDRARLRVTPRHLAYLKVSEGCDRLCTFCAIPMMRGKHVTK 185

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            + +V+ EA +L+ +GV E+ L+ Q++  + G  L GE    ++LL  L ++ GL  +R 
Sbjct: 186 PIEEVLREAEELVRDGVRELVLVAQDMT-YYGMDLYGEP-RLAELLQRLDQLDGLDWIRI 243

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
              +PR  +D L         ++PYL +P+Q  +DR+L++MNRRHT  E   II R+R+ 
Sbjct: 244 LYCYPRHFTDELYATLAGATRIVPYLDMPLQHINDRMLRAMNRRHTKQETIGIIQRLRAE 303

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P + + + FIVGFPGET++ F    + V +  + +   F YS    TP + +   +DE 
Sbjct: 304 IPRLVLRTTFIVGFPGETEEQFAELEEFVVQTRFERLGVFPYSYEPDTPAARLKGHLDEE 363

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-------------KHGKEKGKLVGRS 432
            K +R   +    +     FN++ VGQ +EVLI+                 +  + +GR+
Sbjct: 364 TKLQRRDRIMAAQQPIAFEFNESLVGQTLEVLIDAADLHPRHEGDPFGPDGQPHRWIGRT 423

Query: 433 ----PWLQSV-VLNSKNHNIGDIIKVRITDVKISTLYG 465
               P +  + +++      GD+++ RI   +   L  
Sbjct: 424 YADAPDVDGLTLVSGSGLRPGDLVECRIVAARGYDLEA 461


>gi|317503240|ref|ZP_07961298.1| 2-methylthioadenine synthetase [Prevotella salivae DSM 15606]
 gi|315665653|gb|EFV05262.1| 2-methylthioadenine synthetase [Prevotella salivae DSM 15606]
          Length = 433

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 122/450 (27%), Positives = 215/450 (47%), Gaps = 35/450 (7%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDAD--LIVLNTCHIREKAAEKVYSFLGR 86
           + + GC  N+ DS  +   F + GY  V+     D  + V+NTC   E A E+  + +  
Sbjct: 8   IITMGCSKNLVDSELLMKQFEANGYHCVHDSKRPDGEIAVINTCGFIESAKEESINTILE 67

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
             N KN     G    + V GC++Q   +E+ +  P V+   G   Y +L   L +A   
Sbjct: 68  FVNAKNE----GRLKRLYVMGCLSQRYKDELEQEIPEVDKFYGKFNYKQLLTDLGKA--- 120

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
                         +  S     +       A++ I EGC++ C +C +P   G   SR 
Sbjct: 121 --------------DVPSCNGRRHLTTPRHYAYVKIAEGCNRQCAYCAIPLITGKHTSRP 166

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
             +++ E ++L++ GV E  ++ Q +  + G  +DG++   +DL+  +++IKG+  +R  
Sbjct: 167 KEEILQEVKELVEEGVKEFQIIAQELT-YYGVDIDGQR-HIADLIRDIADIKGVEWIRLH 224

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
            ++P +    L+    +   +  YL + +Q  S+ +L +M+R  +  E  ++I +IR   
Sbjct: 225 YAYPNEFPLELLDVIREKPNVCKYLDIALQHISNHMLDAMHRHVSKEETVELIKKIREAV 284

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP-GSNMLEQVDEN 385
           P I I +  +VGFPGETD+DF   +D V    + +  +F YS   GT    +  + V E 
Sbjct: 285 PGIHIRTTLLVGFPGETDEDFNELVDFVKWAKFERMGAFTYSEEEGTYSAGHYKDDVSEE 344

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVV-- 439
           VK +RL  L    +E   +  +A +G+ ++V+I++  KE    VGR    SP +   V  
Sbjct: 345 VKQKRLDTLMAVQQEISAAVEEAKIGKTLKVIIDR--KEGDYYVGRSEFCSPEVDPEVLI 402

Query: 440 -LNSKNHNIGDIIKVRITDVKISTLYGELV 468
            ++ K   +G+   V ITD +   LYG ++
Sbjct: 403 PVSEKKLRVGNFYHVEITDSEAFDLYGHVI 432


>gi|89890435|ref|ZP_01201945.1| MiaB family tRNA modifying enzyme [Flavobacteria bacterium BBFL7]
 gi|89517350|gb|EAS20007.1| MiaB family tRNA modifying enzyme [Flavobacteria bacterium BBFL7]
          Length = 438

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 127/463 (27%), Positives = 221/463 (47%), Gaps = 33/463 (7%)

Query: 13  MVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHI 72
           M   +  +     +  V + GC  NVYDS  +     + G + V+  ++ +++V+NTC  
Sbjct: 1   MQPLMRTKSRKKNKINVITLGCSKNVYDSEVLMGQLKASGKDVVH-EEEGNIVVINTCGF 59

Query: 73  REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT 132
            + A E+  + +      KNS    G    V V+GC+++    ++ +  P V+   G   
Sbjct: 60  IDNAKEESVNTILDFVERKNS----GEVDQVFVSGCLSERYKPDLQKEIPDVDQYFGT-- 113

Query: 133 YYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTF 192
              LP LL       + +  DY  E   ER++     Y       A+  I EGCD+ C+F
Sbjct: 114 -TELPSLL-------KALGADYKHELIGERVTTTPKNY-------AYFKIAEGCDRPCSF 158

Query: 193 CVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLY 252
           C +P  RG   S  +  +V EA KL  NGV E+ L+ Q++  + G  L  +K   +DLL 
Sbjct: 159 CAIPLMRGGHKSTPIEHLVIEAEKLAANGVKELILIAQDLT-YYGLDLY-KKRRLADLLK 216

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
            L +++G+  +R   + P      +++       +  YL +P+Q  S  +LKSM R  T 
Sbjct: 217 ELVKVEGIEWIRMHYAFPTGFPMDVLEVMKSEPKVCNYLDIPLQHISTPVLKSMRRGTTF 276

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
            +   +++  R+  P++AI +  IVG+PGET++D++     V    + +   F YS    
Sbjct: 277 EKTNALLEDFRATVPEMAIRTTLIVGYPGETEEDYQILKQWVKDQRFERMGCFTYSHEEN 336

Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS 432
           T    + + V E VK ER   + +   +     N   +GQI +V+I++  K     VGR+
Sbjct: 337 THAYKLEDDVPEEVKQERANEIMEIQSQISWELNQHKIGQIFKVIIDR--KRGNYFVGRT 394

Query: 433 ----PWLQS-VVLNSKNH--NIGDIIKVRITDVKISTLYGELV 468
               P + + V+++++ H  ++G  + V IT+ +   LYG  V
Sbjct: 395 EFDSPDVDNEVLIDAEKHYLSVGSFVNVTITEAEDFDLYGTPV 437


>gi|82703100|ref|YP_412666.1| hypothetical protein Nmul_A1979 [Nitrosospira multiformis ATCC
           25196]
 gi|123754305|sp|Q2Y7J7|RIMO_NITMU RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|82411165|gb|ABB75274.1| SSU ribosomal protein S12P methylthiotransferase [Nitrosospira
           multiformis ATCC 25196]
          Length = 448

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 132/457 (28%), Positives = 204/457 (44%), Gaps = 37/457 (8%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R    S GC   + DS ++     ++GYE  ++ +DADL+V+NTC   + A E+    +G
Sbjct: 10  RIGFVSLGCPKALVDSEQILTQLRAEGYETSSTYEDADLVVVNTCGFIDSAVEESLDAIG 69

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCV-AQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
                            V+V GC+ A+  G+ + +  P V  V GP     +   +    
Sbjct: 70  EALAENGK---------VIVTGCLGAKEGGDVVKQAHPQVLAVTGPHALPEVMAAVHMHL 120

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
                        D +  L I   G        A+L I EGC+  CTFC++P  RG  +S
Sbjct: 121 P---------QPHDPYTSL-IPPQGIKLTPRHYAYLKISEGCNHRCTFCIIPSMRGDLVS 170

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE---------KCTFSDLLYSLS 255
           R + QV++EA  L++ GV E+ ++ Q+ +A  G  +            K   +DL  SL 
Sbjct: 171 RPIHQVMEEAENLVNAGVRELLVISQDTSA-YGVDVKYRTGFWQGRPLKTRMTDLARSLG 229

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
           E+   VRL Y   +P       + A G    ++PYL +P Q  S RILK+M R   +   
Sbjct: 230 ELGVWVRLHYVYPYPHVDEVIPLMAEG---KILPYLDVPFQHASPRILKAMKRPANSENN 286

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
              I R R V PDI + S FIVGFPGET+ +F   ++ +++    +   F YSP  G   
Sbjct: 287 LSRIRRWREVCPDITLRSTFIVGFPGETEAEFEQLLEFLEEAQLDRVGCFAYSPVEGAAA 346

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSP 433
           + + + V E VK ER  C      +         +G+ + VLI+   K K   +    +P
Sbjct: 347 NALPDPVPEEVKEERRACFMAIQEKISAERLARKIGKRMIVLIDDVSKNKAVARSTADAP 406

Query: 434 WLQSVVL--NSKNHNIGDIIKVRITDVKISTLYGELV 468
            +  +V    +KN   G+ I+V I       L+   V
Sbjct: 407 EIDGLVYIGKAKNVKPGEFIEVEIIRSDPHDLHARQV 443


>gi|94969171|ref|YP_591219.1| hypothetical protein Acid345_2144 [Candidatus Koribacter versatilis
           Ellin345]
 gi|123381489|sp|Q1IPQ5|RIMO_ACIBL RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|94551221|gb|ABF41145.1| SSU ribosomal protein S12P methylthiotransferase [Candidatus
           Koribacter versatilis Ellin345]
          Length = 504

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 130/504 (25%), Positives = 208/504 (41%), Gaps = 56/504 (11%)

Query: 14  VSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIR 73
           VS +      P++    S GC  N+ DS  M  +  + G E     +DAD+IV+NTC   
Sbjct: 8   VSTLEQPETKPKKVGFVSLGCPKNLVDSEVMMGLLATNGAEITARAEDADIIVVNTCSFI 67

Query: 74  EKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT- 132
           + A ++    +  +   K      G    ++VAGC+ +    EI +  P V+ VVG    
Sbjct: 68  DTAKQESVDTILEMAGHKA----TGRAQKLIVAGCLVERYRNEIQKNIPEVDAVVGTGEL 123

Query: 133 -----------------------------------YYRLPELLERARFGKRVVDTDYSVE 157
                                                  PE   R   G R   TD+   
Sbjct: 124 EAILAASGIEPRKSEANSPFVILNSTSASQQLKSGIADRPEGAAREEAG-RFARTDWDGA 182

Query: 158 DKFERLSIVDGGYNR---KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEA 214
                  + D    R        A++ + EGCD  C+FC++P  RG   SR    VV EA
Sbjct: 183 VADLPNYLYDENTPRVLATPKYMAYIKVAEGCDHPCSFCIIPQLRGKFRSRRFESVVAEA 242

Query: 215 RKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMS 274
            +L   GV EITL+GQ+     G+ L G K   + LL  L++I+ L  +R+  ++P  ++
Sbjct: 243 ERLAKQGVKEITLIGQDTT-CYGEDL-GLKDGLAQLLERLAQIEELQWVRFLYAYPNKIT 300

Query: 275 DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSD 334
             L++   D   +  Y+ +P+Q  +  +LK M R      + + I+ +R V PD+ + + 
Sbjct: 301 KRLLQTIADNPKIPKYMDVPLQHSAANVLKRMKRGAHGDIFLKSIEEMRRVIPDLTLRTS 360

Query: 335 FIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCL 394
           FIVGFPGET++DF    + V          F YS   G     + E+V       R   L
Sbjct: 361 FIVGFPGETEEDFNQLCEFVKAAQIDWLGVFSYSDEEGAKAFALDEKVPPREIERRRKKL 420

Query: 395 QKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLVGRS----PWLQS-VVLNS----KN 444
               ++       A +G+  +V++E   +E      GR+    P +   V +N     +N
Sbjct: 421 MSLQKQISKKKRKALIGREFDVILEGPSEETDLLWEGRTAMHAPEIDGKVYINDFAEHEN 480

Query: 445 HNIGDIIKVRITDVKISTLYGELV 468
              G + +  IT+     L   L+
Sbjct: 481 VEPGQVFRCEITEAHDYDLVARLL 504


>gi|303230864|ref|ZP_07317611.1| ribosomal protein S12 methylthiotransferase RimO [Veillonella
           atypica ACS-049-V-Sch6]
 gi|302514624|gb|EFL56619.1| ribosomal protein S12 methylthiotransferase RimO [Veillonella
           atypica ACS-049-V-Sch6]
          Length = 448

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 120/456 (26%), Positives = 212/456 (46%), Gaps = 19/456 (4%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + +     S GC  N+ D+  M  +    GY   +++ +ADLI++NTC   EKA E+  +
Sbjct: 1   MTKSLGYISLGCAKNLVDTEVMLGLLKDDGYTITDNLHEADLIIINTCTFIEKAKEESIN 60

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +      K      G    ++VAGC++Q   +E+    P ++ ++G   + ++   ++ 
Sbjct: 61  TILEAAQYKE----TGRCKGLIVAGCLSQQYQDELFTEIPEIDALIGTGAWDQVMVAVDA 116

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
              G R    +       ER+  +          +A++ I EGC+  CTFC++P  RG  
Sbjct: 117 IEHGNRSCIMENITNIYDERMPRIQ----TTPRYSAYVKIAEGCNNGCTFCIIPKVRGAF 172

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SRS+  +  E  +L  +GV EI L+ Q+  +  G  L+  K   ++LL  L++++G+  
Sbjct: 173 RSRSIESIKAEVERLATSGVKEIVLIAQDTTS-YGIDLNNGKPLLTELLKELTKVEGIEW 231

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R    +P   SD L+    +   L  Y+ +P+Q  ++ ILK MNRR +  +  +++ +I
Sbjct: 232 IRMLYLYPTFFSDELLDIIVNEPKLCKYVDIPLQHVNNDILKQMNRRDSREDIERLLKKI 291

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+    + + +  IVGFPGETD+ F+   + V  I +     F YS   GT      +QV
Sbjct: 292 RNAPTHVTLRTSIIVGFPGETDEQFQELCEFVKDIKFDNMGVFTYSQEEGTIAGAREDQV 351

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-------EKGKLVGRSPWL 435
            E+VK ER   L           N    G I   +IE+  +        KG+L  ++P +
Sbjct: 352 PEDVKEERYHTLMSIQAAISEENNRDLEGTIDYAMIEELEEGDNDTVLAKGRLKSQAPDV 411

Query: 436 QSVVLN---SKNHNIGDIIKVRITDVKISTLYGELV 468
              +           GDI++V++       +   +V
Sbjct: 412 DGNMYIEDCGDKVKAGDIVQVQVEQGFAYDVVATIV 447


>gi|262279364|ref|ZP_06057149.1| conserved hypothetical protein [Acinetobacter calcoaceticus
           RUH2202]
 gi|262259715|gb|EEY78448.1| conserved hypothetical protein [Acinetobacter calcoaceticus
           RUH2202]
          Length = 447

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 125/459 (27%), Positives = 207/459 (45%), Gaps = 37/459 (8%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC   + DS R+     ++GY+  +  D ADL+V+NTC   E A ++    +G
Sbjct: 5   KVGFVSLGCPKALVDSERILTQLKTEGYQVASDYDGADLVVVNTCGFIESAVQESLDAIG 64

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                         +  V+V GC+   + ++I +  P V  V G   Y  + E +     
Sbjct: 65  EA---------MSENGRVIVTGCLG-KDEDKIRQMHPNVLKVTGAAAYQDVMEAVHEY-- 112

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                      +       + + G        A+L I EGC+  CTFC++P  RG  +SR
Sbjct: 113 ------VPAPPKHNPFIDLVPEQGIRLTPKHYAYLKISEGCNHRCTFCIIPSMRGDLVSR 166

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYSLSEI 257
            +  V++EA  L   GV EI ++ Q+ +A+      +    +G+  K  F D+  +L ++
Sbjct: 167 PVGSVLEEAAALKRAGVKEILVISQDTSAYGVDTKYKLDFWNGQPVKTKFFDMCEALGQM 226

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
              VRL Y   +P   +   + A G    ++PYL +P Q  S RILK M R   +    +
Sbjct: 227 GIWVRLHYVYPYPHVDAVIDLMAQG---KILPYLDIPFQHASPRILKLMKRPAHSENTLE 283

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
            I   R   PD+ I S F+VGFPGET++DF+  +D + +    +   F YSP  G   ++
Sbjct: 284 KIKLWREKCPDLVIRSTFVVGFPGETEEDFQLLLDWLVEAQLDRVGCFTYSPVEGATAND 343

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----P 433
           + + V E +K ER     +  ++   +     +GQ + VL++    E    V RS    P
Sbjct: 344 LPDHVPEEIKQERYERFMQVQQQISAARLQKRIGQTMTVLVDSLEDEYPVAVARSYADAP 403

Query: 434 WLQSVVL----NSKNHNIGDIIKVRITDVKISTLYGELV 468
            +   V     +      GD+++V ITD     L+ +L+
Sbjct: 404 EIDGNVFVEDIDKNTIQPGDMLEVEITDADEYDLFAKLI 442


>gi|187932620|ref|YP_001885098.1| hypothetical protein CLL_A0897 [Clostridium botulinum B str. Eklund
           17B]
 gi|187720773|gb|ACD21994.1| conserved hypothetical protein [Clostridium botulinum B str. Eklund
           17B]
          Length = 434

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 141/446 (31%), Positives = 236/446 (52%), Gaps = 18/446 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    + GC++N Y++  M + F  +GY   +  D AD+ V+NTC +     +K    + 
Sbjct: 2   KVAFATLGCRVNQYETEAMTEKFIREGYSVTDFDDFADVYVINTCTVTNMGDKKSRQIIS 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           + R       +   D ++ V GC +Q   EE+  +   V+VV+G +    +   + +AR 
Sbjct: 62  KAR-------RTNSDAIIAVVGCYSQIAPEEV-SKIEGVDVVLGTRNKGDIVYFVNKARD 113

Query: 146 GK--RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            K  +V   +     +FE L+I +     +    AFL IQ+GC++FCTFC++PY RG   
Sbjct: 114 EKAIQVSVNEVLRNKEFEELNIEEY----QDKTRAFLKIQDGCNRFCTFCLIPYARGATC 169

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           S+   +V++E +KL ++G  E+ L G +  A  G  L G   T   LL  + +I+G+ R+
Sbjct: 170 SKKPEKVLEEVKKLAEHGFKEVILSGIHT-ASYGVDL-GTGVTLISLLEDIEKIEGIDRV 227

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R  +  P   +D +I    ++  L P+ HL +QSGSD  LK MNRR+TA EY + +  +R
Sbjct: 228 RIGSIEPAFFTDEVINKIKNMKKLCPHFHLSLQSGSDATLKRMNRRYTADEYAKTVQTLR 287

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
               D++I++D IVGFPGET+++F  T + + K+   +   FKYSPR GT  + M  Q+D
Sbjct: 288 DNIQDVSITTDLIVGFPGETEEEFNETYEYLKKLKLTKVHLFKYSPRKGTKAAEMPNQID 347

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKH-GKEKGKLVGRSPWLQSVVL-N 441
            N+K +R   L +  +E +V F    VG+ + VLIE+    + G   G +       + +
Sbjct: 348 GNIKDKRSKILSELNKENEVDFVKKLVGREMGVLIERECSNKPGIFEGYTKNYVKAEISD 407

Query: 442 SKNHNIGDIIKVRITDVKISTLYGEL 467
           +    IG I+   I D + + + G++
Sbjct: 408 ASEEMIGKIMNCNIEDYEDNYIIGKI 433


>gi|254245338|ref|ZP_04938659.1| hypothetical protein BCPG_00035 [Burkholderia cenocepacia PC184]
 gi|124870114|gb|EAY61830.1| hypothetical protein BCPG_00035 [Burkholderia cenocepacia PC184]
          Length = 461

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 131/482 (27%), Positives = 211/482 (43%), Gaps = 48/482 (9%)

Query: 13  MVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHI 72
           M  Q         R  + S GC   + DS ++     ++GYE   S D ADL+V+NTC  
Sbjct: 1   MSQQKSPAHSPAPRIGMVSLGCPKALVDSEQIITQLRAEGYEISGSYDGADLVVVNTCGF 60

Query: 73  REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEE----ILRRSPIVNVVV 128
            ++A ++    +G                 V+V GC+           I    P V  V 
Sbjct: 61  IDEAVQESLDAIGEALTENGK---------VIVTGCLGAKSSASGSNLIEEVHPKVLAVT 111

Query: 129 GPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
           GP     + + +                 D F  L    G     R   A+L I EGC+ 
Sbjct: 112 GPHAVGEVMQAVHSHLP---------KPHDPFVDLVPAAGIKLTPRHY-AYLKISEGCNH 161

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDG 242
            CTFC++P  RG  +SR +++V+ EA  L  +GV E+ ++ Q+ +A+      R    +G
Sbjct: 162 RCTFCIIPSMRGDLVSRPVAEVMLEAENLFKSGVKELLVISQDTSAYGVDVKYRTGFWNG 221

Query: 243 E--KCTFSDLLYSLSEI----KGLVRLRYTTSHPRDMSDCLIKAHGDLD-VLMPYLHLPV 295
           +  K   +DL+ +L E+       VRL Y   +P       + A G     ++PYL +P 
Sbjct: 222 KPIKTRMTDLVAALGELAAQYGAWVRLHYVYPYPSVDEVIPLMAEGAFKGHVLPYLDVPF 281

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
           Q     +LK M R   A +  + + + R + PD+ I S FI GFPGET++ F   +D + 
Sbjct: 282 QHAHPEVLKRMKRPANAEKVLERVQKWREICPDLTIRSTFIAGFPGETEEQFETLLDFIR 341

Query: 356 KIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIE 415
           +    +   F YSP  G   +++   + + V+ ER     +   E   +     VG+ ++
Sbjct: 342 EAELDRVGCFAYSPVEGASANDLDGALPDEVREERRARFMEVAEEVSANRMQRKVGKTLK 401

Query: 416 VLIEKHGKEKGKLVGRS----PWLQSVVLN------SKNHNIGDIIKVRITDVKISTLYG 465
           VLI++   E G  +GR+    P +  VV        SK + +GD + V+IT      L+G
Sbjct: 402 VLIDEVSAEGG--IGRTAADAPEIDGVVYVEPAAKASKRYKVGDFVSVKITGADGHDLWG 459

Query: 466 EL 467
           E+
Sbjct: 460 EV 461


>gi|187933390|ref|YP_001885483.1| hypothetical protein CLL_A1285 [Clostridium botulinum B str. Eklund
           17B]
 gi|238065363|sp|B2TJ67|RIMO_CLOBB RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|187721543|gb|ACD22764.1| conserved hypothetical protein [Clostridium botulinum B str. Eklund
           17B]
          Length = 446

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 128/454 (28%), Positives = 223/454 (49%), Gaps = 22/454 (4%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           +   +  + S GC  N  DS  +     ++ YE  N+  +AD+I++NTC   E A ++  
Sbjct: 1   MTKYKVGMVSLGCDKNRVDSEIILGKMSNE-YEITNNAKEADVIIVNTCGFIESAKQESI 59

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             +  +   KN+        L++  GC+ Q  G+E+    P +++++G   Y ++ ++++
Sbjct: 60  DTILEMAEYKNNYK----CKLLIATGCLIQRYGDELKNLIPEIDIMLGVNDYNKIDKVIK 115

Query: 142 RARFGKRVVD--TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
               G +      +YS E+  E   I+       +  +A++ I EGC+ FCT+C++P  R
Sbjct: 116 EFIEGNKEASKLLNYSDENINEGNRIL-----TTQKESAYIRIAEGCNNFCTYCIIPKIR 170

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G   SR +  ++ EA  L   GV E+ L+ Q+     G  + G+K     LL  LS+I+G
Sbjct: 171 GKFRSRRMENIISEATDLASQGVKELILIAQDTT-QYGSDIYGKK-NLHVLLKELSKIEG 228

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           +  +R    +P  + D LI+     + ++ YL +P+Q  SD +LK M R+ +  +    I
Sbjct: 229 IKWIRVLYCYPEAIYDELIEEIAVNEKVVKYLDIPIQHISDHVLKLMGRKTSKKDITDKI 288

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
           +++R   P+I I + FIVGFP ET +DF   ++ + +    +   FKYS    TP S M 
Sbjct: 289 EKLRKSIPNIIIRTTFIVGFPQETQEDFEEILEFLQEYKLDKVGVFKYSREEDTPASKMD 348

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWL 435
            Q+DE +K ER   L     +     N   V +  ++LIE++  +     GR    +P +
Sbjct: 349 GQIDEAIKKEREEKLMLSQEKISNDINKLKVNKKYDILIEEY--DGEFYKGRNFEMAPDI 406

Query: 436 QSVVL--NSKNHNIGDIIKVRITDVKISTLYGEL 467
              V   + KN  IG+ +KV+I       L G +
Sbjct: 407 DGNVFFESPKNLEIGEFVKVKIIKNMDYDLIGVV 440


>gi|107029038|ref|YP_626133.1| hypothetical protein Bcen_6297 [Burkholderia cenocepacia AU 1054]
 gi|116689803|ref|YP_835426.1| MiaB-like tRNA modifying enzyme YliG [Burkholderia cenocepacia
           HI2424]
 gi|123070902|sp|Q1BGU5|RIMO_BURCA RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|238065303|sp|A0K7Q6|RIMO_BURCH RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|105898202|gb|ABF81160.1| SSU ribosomal protein S12P methylthiotransferase [Burkholderia
           cenocepacia AU 1054]
 gi|116647892|gb|ABK08533.1| SSU ribosomal protein S12P methylthiotransferase [Burkholderia
           cenocepacia HI2424]
          Length = 453

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 128/469 (27%), Positives = 208/469 (44%), Gaps = 48/469 (10%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC   + DS ++     ++GYE   S D ADL+V+NTC   ++A ++    +G
Sbjct: 6   KVGFVSLGCPKALVDSEQIITQLRAEGYEISGSYDGADLVVVNTCGFIDEAVQESLDAIG 65

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEE----ILRRSPIVNVVVGPQTYYRLPELLE 141
                            V+V GC+           I    P V  V GP     + + + 
Sbjct: 66  EALTENGK---------VIVTGCLGAKSSASGSNLIEEVHPKVLAVTGPHAVGEVMQAVH 116

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
                           D F  L    G     R   A+L I EGC+  CTFC++P  RG 
Sbjct: 117 SHLP---------KPHDPFVDLVPAAGIKLTPRHY-AYLKISEGCNHRCTFCIIPSMRGD 166

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYS 253
            +SR +++V+ EA  L  +GV E+ ++ Q+ +A+      R    +G+  K   +DL+ +
Sbjct: 167 LVSRPVAEVMLEAENLFKSGVKELLVISQDTSAYGVDVKYRTGFWNGKPIKTRMTDLVAA 226

Query: 254 LSEI----KGLVRLRYTTSHPRDMSDCLIKAHGDLD-VLMPYLHLPVQSGSDRILKSMNR 308
           L E+       VRL Y   +P       + A G     ++PYL +P Q     +LK M R
Sbjct: 227 LGELAAQYGAWVRLHYVYPYPSVDEVIPLMAEGAFKGHVLPYLDVPFQHAHPEVLKRMKR 286

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
              A +  + + + R + PD+ I S FI GFPGET++ F   +D + +    +   F YS
Sbjct: 287 PANAEKVLERVQKWREICPDLTIRSTFIAGFPGETEEQFETLLDFIREAELDRVGCFAYS 346

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL 428
           P  G   +++   + + V+ ER     +   E   +     VG+ ++VLI++   E G  
Sbjct: 347 PVEGATANDLDGALPDEVREERRARFMEVAEEVSANRMQRKVGKTLKVLIDEVSAEGG-- 404

Query: 429 VGRS----PWLQSVVLN------SKNHNIGDIIKVRITDVKISTLYGEL 467
           +GR+    P +  VV        SK + +GD + V+IT      L+GE+
Sbjct: 405 IGRTAADAPEIDGVVYVEPAAKASKRYKVGDFVSVKITGADGHDLWGEV 453


>gi|225568730|ref|ZP_03777755.1| hypothetical protein CLOHYLEM_04809 [Clostridium hylemonae DSM
           15053]
 gi|225162229|gb|EEG74848.1| hypothetical protein CLOHYLEM_04809 [Clostridium hylemonae DSM
           15053]
          Length = 427

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 128/440 (29%), Positives = 225/440 (51%), Gaps = 27/440 (6%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++  + + GC++N Y++  M+++    GYE V   + AD+ ++NTC +   A  K    L
Sbjct: 2   KKVALHNLGCKVNAYETEAMQELLAQHGYEIVPFEEGADVYIINTCTVTNMADRKSRQML 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE--- 141
            R R       K     ++V AGC  QA GE+       +++V+G      L  +LE   
Sbjct: 62  HRAR-------KMNPSAVIVAAGCYVQARGED---ADDCIDIVIGNNRKKDLIRILEEYE 111

Query: 142 --RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
             R   G+ ++D D++  D++E L++            A++ +Q+GC++FC++C++PY R
Sbjct: 112 DGRWETGEGLLDIDHT--DEYEELNVSR----TAEHTRAYIKVQDGCNQFCSYCIIPYAR 165

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G   SR    V+ E R+L + G  E+ L G +++++     D        L+ ++    G
Sbjct: 166 GRVRSRKRESVLAEVRRLAEGGYKEVVLTGIHLSSYGVDTGD----DLLRLIEAVHGTDG 221

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           + R+R  +  PR +++   +A   L  + P+ HL +QSG +  LK MNRR+TA EY +  
Sbjct: 222 IERIRLGSLEPRIVTEEFAQALAGLPKICPHFHLSLQSGCNATLKRMNRRYTAEEYFEKC 281

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
           + +R    D A+++D IVGFPGETD +F  +   +D++ + +   FKYS R GT  + M 
Sbjct: 282 ELLRRYFRDPALTTDVIVGFPGETDAEFEESRAFIDRVDFYETHVFKYSKREGTKAAGME 341

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV--GRSPWLQS 437
           +QV + VK  R   L +  R +Q ++ +  +G  +EVL+E+     G+L   G +     
Sbjct: 342 DQVPDEVKTARSSVLLELSRRKQAAYEEKLIGTTVEVLMEETVMRGGELYETGHTKEYVK 401

Query: 438 VVLNSKNHNIGDIIKVRITD 457
           +      +    +I V I  
Sbjct: 402 IGRKGSENLTNKVINVEIES 421


>gi|169795680|ref|YP_001713473.1| hypothetical protein ABAYE1576 [Acinetobacter baumannii AYE]
 gi|215483167|ref|YP_002325374.1| RNA modification enzyme, MiaB family protein [Acinetobacter
           baumannii AB307-0294]
 gi|301512089|ref|ZP_07237326.1| ribosomal protein S12 methylthiotransferase [Acinetobacter
           baumannii AB058]
 gi|332852498|ref|ZP_08434237.1| ribosomal protein S12 methylthiotransferase RimO [Acinetobacter
           baumannii 6013150]
 gi|332871298|ref|ZP_08439847.1| ribosomal protein S12 methylthiotransferase RimO [Acinetobacter
           baumannii 6013113]
 gi|238065266|sp|B7H1U1|RIMO_ACIB3 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|238065271|sp|B0V6E8|RIMO_ACIBY RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|169148607|emb|CAM86473.1| conserved hypothetical protein [Acinetobacter baumannii AYE]
 gi|213988942|gb|ACJ59241.1| RNA modification enzyme, MiaB family protein [Acinetobacter
           baumannii AB307-0294]
 gi|332729200|gb|EGJ60543.1| ribosomal protein S12 methylthiotransferase RimO [Acinetobacter
           baumannii 6013150]
 gi|332731582|gb|EGJ62868.1| ribosomal protein S12 methylthiotransferase RimO [Acinetobacter
           baumannii 6013113]
          Length = 447

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 123/459 (26%), Positives = 207/459 (45%), Gaps = 37/459 (8%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC   + DS R+     ++GY+  +  D ADL+V+NTC   E A ++    +G
Sbjct: 5   KVGFVSLGCPKALVDSERILTQLKTEGYQVASDYDGADLVVVNTCGFIESAVQESLDAIG 64

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                         +  V+V GC+   + ++I +  P V  V G   Y  + E +     
Sbjct: 65  EA---------MSENGRVIVTGCLG-KDEDKIRQMHPNVLKVTGAAAYQDVMEAVHEY-- 112

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                      +       + + G        A+L I EGC+  CTFC++P  RG  +SR
Sbjct: 113 ------VPAPPKHNPFIDLVPEQGIRLTPKHYAYLKISEGCNHRCTFCIIPSMRGDLVSR 166

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYSLSEI 257
            +  V++EA  L   GV EI ++ Q+ +A+      +    +G+  K  F D+  +L ++
Sbjct: 167 PVGSVLEEAAALKRAGVKEILVISQDTSAYGVDTKYKLDFWNGQPVKTKFFDMCEALGQL 226

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
              VRL Y   +P   +   + A G    ++PYL +P Q  S R+LK M R   +    +
Sbjct: 227 GIWVRLHYVYPYPHVDAVIDLMAQG---KILPYLDIPFQHASPRVLKLMKRPAHSENTLE 283

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
            I   R   P++ I S F+VGFPGET++DF+  +D + +    +   F YSP  G   ++
Sbjct: 284 KIKLWREKCPNLVIRSTFVVGFPGETEEDFQILLDWLVEAQLDRVGCFTYSPVEGATAND 343

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----P 433
           + + V E +K ER     +  ++   +     +GQ + VL++    E    V RS    P
Sbjct: 344 LPDHVPEEIKQERYERFMQVQQQISAAKLQKRIGQTMTVLVDSLEDEYPVAVARSYADAP 403

Query: 434 WLQSVVL----NSKNHNIGDIIKVRITDVKISTLYGELV 468
            +   V     +      GD+++V ITD     L+ +L+
Sbjct: 404 EIDGNVFVEDIDKSTIQPGDMLEVEITDADEYDLFAKLI 442


>gi|325916906|ref|ZP_08179151.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Xanthomonas
           vesicatoria ATCC 35937]
 gi|325536852|gb|EGD08603.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Xanthomonas
           vesicatoria ATCC 35937]
          Length = 457

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 130/458 (28%), Positives = 211/458 (46%), Gaps = 39/458 (8%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC   + DS R+      +GY+ V S D AD++V+NTC   + A  +    +G
Sbjct: 7   KVGFVSLGCPKALVDSERILTQLRVEGYDIVPSYDAADVVVVNTCGFIDSAVTESLDAIG 66

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                         +  V+V GC+ +   E+I    P V  V GPQ Y  + E +  A  
Sbjct: 67  EA---------MNANGKVIVTGCLGKR-PEQIREAYPQVLAVSGPQDYQSVMEAVHAALP 116

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            +          D F  L + D G        A+L I EGC+  C+FC++P  RG   SR
Sbjct: 117 PR---------HDPFVDL-VPDYGIKLTPRHYAYLKISEGCNHRCSFCIIPSMRGDLASR 166

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSD---------LLYSLSE 256
            + +V+ EA +L+  GV E+ ++ Q+ +A  G  L   +  + D         L   LSE
Sbjct: 167 PVDEVLREAERLVRGGVKELLVVSQDTSA-YGVDLKYAERPWRDRMYQTRMKALCEGLSE 225

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           +    RL Y   +P       + A G    L+PYL +P Q  S RILK M R     +  
Sbjct: 226 LGVWTRLHYVYPYPHVDDVIPLMAEG---KLLPYLDIPFQHASPRILKLMKRPGAVEKTL 282

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
           + + R +++ P+I + S FIVGFPGETD +F + ++ +D+    +  +F YSP  G   +
Sbjct: 283 ERVQRWKAMCPEITVRSTFIVGFPGETDAEFESLLEFLDQAQLDRVGAFAYSPVDGASAN 342

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE--KHGKEKGKLVGRSPW 434
            + + V E VK +RL     +  E   +  +A +G + + L++  +      +    +P 
Sbjct: 343 ALPDPVPEEVKQQRLARFMARQAEISAARLEAKIGSVQQCLVDLIEDDIAVARSRADAPE 402

Query: 435 LQS-VVLNSKNHN---IGDIIKVRITDVKISTLYGELV 468
           +   V + +       +GD+I V ITD     L+G+ +
Sbjct: 403 IDGLVHIQNGGELGLKVGDLIDVEITDSDEHDLFGDAL 440


>gi|78778491|ref|YP_396603.1| hypothetical protein PMT9312_0106 [Prochlorococcus marinus str. MIT
           9312]
 gi|78711990|gb|ABB49167.1| SSU ribosomal protein S12P methylthiotransferase [Prochlorococcus
           marinus str. MIT 9312]
          Length = 471

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 128/453 (28%), Positives = 222/453 (49%), Gaps = 26/453 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +      GC+ N+ D+  M+ +    GYE  ++++DA+++V+NTC   E A E+    + 
Sbjct: 32  KVAFSHVGCEKNLVDTQHMQGLLDKDGYEVESNINDANIVVVNTCSFIETAREESIRKIL 91

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                            V+VAGC+AQ   EE+L+  P +  +VG   Y ++ ++L+R   
Sbjct: 92  EY---------TNQGKEVIVAGCMAQHFKEELLKEIPEIKGLVGTGDYQKIAKVLDRVEK 142

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G+ V +     E   +        +  K    A+L I EGC+  C FC++P  RG + SR
Sbjct: 143 GEIVNEVSKIPEFIADEEIP---RFVDKNKFVAYLRIAEGCNYNCAFCIIPKLRGPQRSR 199

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           ++  +V EA+ L   G+ EI L+ Q +    GK + G K + + LL  LS++  +  +R 
Sbjct: 200 TIESIVSEAKSLAKQGIKEIILISQ-ITTNYGKDIYG-KPSLAKLLNELSKVP-IPWIRI 256

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
             ++P  ++D +I+A  D   ++PY  LP+Q     +LKSMNR   A     I+++IR  
Sbjct: 257 HYAYPTGLTDEVIRAFKDSKNIVPYFDLPLQHSHPDVLKSMNRPWQASLNESILEKIREE 316

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P   + +  IVGFPGE  + F   ++ +D+  +     F +SP  GT   ++  +V   
Sbjct: 317 IPSAVLRTSLIVGFPGEKKEHFEHLLEFLDRHKFDHVGVFIFSPEEGTAAFDLPNKVSPE 376

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVV-- 439
           V A R   +    +      N + VG  +++L+EK   +  +L+GRS    P +   V  
Sbjct: 377 VAAARKDNVISVQQNISKDKNQSYVGSKMKILVEKIS-DNNELIGRSYNFAPEIDGNVIL 435

Query: 440 -LNSKNHN---IGDIIKVRITDVKISTLYGELV 468
            +++ N+    IG  ++  I+      LYGE +
Sbjct: 436 SISANNYLRNYIGKFVEANISFADEYDLYGETI 468


>gi|262370220|ref|ZP_06063546.1| MiaB-like tRNA modifying enzyme YliG [Acinetobacter johnsonii
           SH046]
 gi|262314562|gb|EEY95603.1| MiaB-like tRNA modifying enzyme YliG [Acinetobacter johnsonii
           SH046]
          Length = 447

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 121/463 (26%), Positives = 213/463 (46%), Gaps = 37/463 (7%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           +   +    S GC   + DS R+     ++GY+  +  D ADL+V+NTC   E A ++  
Sbjct: 1   MKSPKVGFVSLGCPKALVDSERILTQLKTEGYDVASDYDGADLVVVNTCGFIESAVQESL 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             +G   +          +  V+V GC+   + ++I +  P V  V G   Y  + E + 
Sbjct: 61  DAIGEAMSA---------NGRVIVTGCLG-KDEDKIRQMHPNVLKVTGAAAYQEVMEAVH 110

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           +          +    + F  L + + G        A+L I EGC+  CTFC++P  RG 
Sbjct: 111 QY-------VPEPPKHNPFIDL-VPEQGIRLTPKHYAYLKISEGCNHRCTFCIIPSMRGD 162

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYS 253
            +SR +  V++EA  L   GV E+ ++ Q+ +A+      +    +G+  K  F D+  +
Sbjct: 163 LVSRPVGSVLEEAAALKRAGVKEVLVISQDTSAYGLDTKYKLDFWNGQPVKTKFYDMCEA 222

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
           L ++   VRL Y   +P   +   + A G    ++PYL +P Q  S ++LK M R   + 
Sbjct: 223 LGQLGIWVRLHYVYPYPHVDAVIDLMAQG---KILPYLDIPFQHASPKVLKLMKRPAHSE 279

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
              + +   R   PD+ + S F+VGFPGET++DF   ++ + +    +   F YSP  G 
Sbjct: 280 NTLERLKLWREKCPDLVLRSTFVVGFPGETEEDFEILLEWLKEAQLDRVGCFTYSPVEGA 339

Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS- 432
             +++ + V E +K +R     +  +    +     VGQ + VL+++  +E    + RS 
Sbjct: 340 TANDLPDHVPEEIKQQRYERFMEVQQAISAAKLRKRVGQKMTVLVDELDEEFPVAIARSY 399

Query: 433 ---PWLQSVVL----NSKNHNIGDIIKVRITDVKISTLYGELV 468
              P +   V     +      GD+++V ITD     LY +L+
Sbjct: 400 ADAPEIDGNVFVEDIDKSQIKSGDLLEVEITDADEYDLYAQLI 442


>gi|238066629|sp|Q31D78|RIMO_PROM9 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
          Length = 454

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 128/453 (28%), Positives = 222/453 (49%), Gaps = 26/453 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +      GC+ N+ D+  M+ +    GYE  ++++DA+++V+NTC   E A E+    + 
Sbjct: 15  KVAFSHVGCEKNLVDTQHMQGLLDKDGYEVESNINDANIVVVNTCSFIETAREESIRKIL 74

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                            V+VAGC+AQ   EE+L+  P +  +VG   Y ++ ++L+R   
Sbjct: 75  EY---------TNQGKEVIVAGCMAQHFKEELLKEIPEIKGLVGTGDYQKIAKVLDRVEK 125

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G+ V +     E   +        +  K    A+L I EGC+  C FC++P  RG + SR
Sbjct: 126 GEIVNEVSKIPEFIADEEIP---RFVDKNKFVAYLRIAEGCNYNCAFCIIPKLRGPQRSR 182

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           ++  +V EA+ L   G+ EI L+ Q +    GK + G K + + LL  LS++  +  +R 
Sbjct: 183 TIESIVSEAKSLAKQGIKEIILISQ-ITTNYGKDIYG-KPSLAKLLNELSKVP-IPWIRI 239

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
             ++P  ++D +I+A  D   ++PY  LP+Q     +LKSMNR   A     I+++IR  
Sbjct: 240 HYAYPTGLTDEVIRAFKDSKNIVPYFDLPLQHSHPDVLKSMNRPWQASLNESILEKIREE 299

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P   + +  IVGFPGE  + F   ++ +D+  +     F +SP  GT   ++  +V   
Sbjct: 300 IPSAVLRTSLIVGFPGEKKEHFEHLLEFLDRHKFDHVGVFIFSPEEGTAAFDLPNKVSPE 359

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVV-- 439
           V A R   +    +      N + VG  +++L+EK   +  +L+GRS    P +   V  
Sbjct: 360 VAAARKDNVISVQQNISKDKNQSYVGSKMKILVEKIS-DNNELIGRSYNFAPEIDGNVIL 418

Query: 440 -LNSKNHN---IGDIIKVRITDVKISTLYGELV 468
            +++ N+    IG  ++  I+      LYGE +
Sbjct: 419 SISANNYLRNYIGKFVEANISFADEYDLYGETI 451


>gi|167465242|ref|ZP_02330331.1| tRNA 2-methylthioadenosine synthase [Paenibacillus larvae subsp.
           larvae BRL-230010]
          Length = 376

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 155/375 (41%), Positives = 221/375 (58%), Gaps = 12/375 (3%)

Query: 98  GGDLLVVVAGCVAQ--AEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYS 155
             +L++ V GC++Q  A    IL++   V+++ G    +RLP LL+ A F K +V   +S
Sbjct: 2   KPNLILGVCGCMSQEEAVINLILQKHAFVDLIFGTHNIHRLPFLLQDAYFSKEMVVEVWS 61

Query: 156 VE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEA 214
            E D  E L +  G      G+ A++ I  GCDKFCT+C+VPYTRG E SR    V+ E 
Sbjct: 62  KEGDIIENLPMKRG------GMRAWVNIMYGCDKFCTYCIVPYTRGKERSRRPQDVIQEV 115

Query: 215 RKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMS 274
           R+L   G  EITLLGQNVN   GK  D  + TF DL+  + +I  + R+R+TTSHPRD  
Sbjct: 116 RELARQGFKEITLLGQNVN-VYGKDFDDIEYTFGDLMDDIRKID-IPRVRFTTSHPRDFD 173

Query: 275 DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSD 334
           D LI+       LM ++HLPVQSG+  ILK M+R++T   Y +++ +I+   PD  +++D
Sbjct: 174 DRLIEVLAKKGNLMEHIHLPVQSGNTEILKKMSRKYTRERYLELVGKIKEAIPDAVLTTD 233

Query: 335 FIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCL 394
            IVGFPGETD+ F  T+ LV ++ Y  AF+F YSPR GTP ++M + +   VK ERL  L
Sbjct: 234 IIVGFPGETDEQFEDTLSLVKEVKYDSAFTFIYSPREGTPAASMEDNIPMEVKKERLARL 293

Query: 395 QKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVLNSKNHNIGDIIKV 453
            + L E     N    GQ++EVL+E   K+  K L GR+   + V        IG+ + V
Sbjct: 294 NEVLAEFSKESNWELKGQVLEVLVEGQSKKNAKVLSGRTRTNKLVHFEGSKDLIGEFVHV 353

Query: 454 RITDVKISTLYGELV 468
           +IT+ +   L GE+V
Sbjct: 354 KITEPQTWLLKGEIV 368


>gi|313112838|ref|ZP_07798485.1| MiaB-like tRNA modifying enzyme YliG [Faecalibacterium cf.
           prausnitzii KLE1255]
 gi|310624908|gb|EFQ08216.1| MiaB-like tRNA modifying enzyme YliG [Faecalibacterium cf.
           prausnitzii KLE1255]
          Length = 441

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 123/448 (27%), Positives = 208/448 (46%), Gaps = 16/448 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC  N  D   M  +  S G+E V  + +AD+I++NTC   E A  +    + 
Sbjct: 2   KIACISLGCPKNQVDLDVMVHILLSAGHETVADLAEADVILVNTCGFIESAKTEAIENIL 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
              + K        +L V+V GC+A+    +I    P V+ VVG  +   +  ++ R   
Sbjct: 62  EACSYKQQ----NPELKVIVTGCLAERYRSQIEEEIPEVDAVVGCASNKAIDTIVARLFH 117

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G+  +++  + +D      +            A+L I EGC+  C +C +P  RG   SR
Sbjct: 118 GEDHLESYGAKKD----FPLGGKRVIGTPAHYAYLKIAEGCNNRCHYCAIPGIRGPLHSR 173

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            ++  V EAR L   GV E+ ++ Q+  A  G+   G+  +  +LL  L+++ GL  +R 
Sbjct: 174 DMADCVAEARWLAGEGVKELIVVAQDPTA-YGEDW-GKPGSICELLDKLNKVPGLEWIRI 231

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
             ++P  ++D  I A    + ++PYL LP+Q  +D ILK+MNRR    E  ++I ++R  
Sbjct: 232 MYAYPERITDEFIAAMKRNEKVVPYLDLPIQHCNDTILKNMNRRSNRAELLEVIGKLRRE 291

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P I + +  I GFPGET++ F    + V ++ + +   F YS    T  + M  Q+++ 
Sbjct: 292 IPGITLRTTLIAGFPGETEEQFEDLCNFVKEVKFDRLGCFAYSAEENTVAAKMDGQIEQE 351

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG----KLVGRSPWLQSVVLN 441
           VK +R   + +             VGQ + VL +   +E G    +  G +P +   V  
Sbjct: 352 VKDKRAELVMQIQTGIMAQKQAEKVGQTVHVLCDGIDEESGLYLCRTTGDAPEVDGNVCV 411

Query: 442 SKNHN--IGDIIKVRITDVKISTLYGEL 467
           S       G    V + D  +  LYG +
Sbjct: 412 SSEEPLYPGQFYDVLVDDSDLYDLYGTV 439


>gi|145635675|ref|ZP_01791371.1| hypothetical protein CGSHiAA_01509 [Haemophilus influenzae PittAA]
 gi|145267070|gb|EDK07078.1| hypothetical protein CGSHiAA_01509 [Haemophilus influenzae PittAA]
          Length = 445

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 135/465 (29%), Positives = 222/465 (47%), Gaps = 42/465 (9%)

Query: 20  QCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEK 79
           Q   P   FV S GC  N+ DS R+     + GY  V S ++ DL+++NTC   + A ++
Sbjct: 2   QNSTPSIGFV-SLGCPKNLVDSERILTELRTDGYNIVPSYENVDLVIVNTCGFIDSAVQE 60

Query: 80  VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL 139
               +G              +  V+V GC+  A+ ++I    P V  V GP +Y  +   
Sbjct: 61  SLEAIGEALE---------ENGRVIVTGCLG-AKEDQIREVHPKVLEVSGPHSYETVMAQ 110

Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           + +                 +  L +   G        A+L I EGCD  CTFC++P  R
Sbjct: 111 VHKY--------VSKPTHSPYTSL-VPKQGVKLTPKHYAYLKISEGCDHRCTFCIIPSMR 161

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-----------GLDGE--KCT 246
           G   SRS++QV+DEA++L + GV E+ ++ Q+ +A+                +G   K  
Sbjct: 162 GDLESRSITQVLDEAKRLAEAGVKELLVVSQDTSAYSMDLKRQEGGVKTAFWNGMPIKND 221

Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306
              L   L ++   VRL Y   +P       + A G    L+PYL +P+Q  S +ILK+M
Sbjct: 222 LMTLCKQLGKLGIWVRLHYVYPYPHVDDLIPLMADGT---LLPYLDIPLQHASPKILKAM 278

Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
            R  +     + I + R + PD+ + S FI+GFPGET++DF+  +D + +    +   FK
Sbjct: 279 KRPGSIDRTLERIKQWREICPDLTLRSTFILGFPGETEEDFQLLLDFLKEAQLDRVGCFK 338

Query: 367 YSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK- 425
           +SP  G P ++M +QV E+VK ER     +  +E   +     +G+ ++VL+++  +E  
Sbjct: 339 FSPVEGAPATDMADQVPEDVKEERFHRFMQLQQEISANRLKQKIGKTLDVLVDEIDEEGI 398

Query: 426 -GKLVGRSPWLQSVVLNSK----NHNIGDIIKVRITDVKISTLYG 465
            G+    +P +  +V        N  +GD+IKV IT+     L+G
Sbjct: 399 IGRSKADAPEVDGLVYVDNLSGINVKVGDVIKVTITNSDEYDLWG 443


>gi|331011329|gb|EGH91385.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Pseudomonas
           syringae pv. tabaci ATCC 11528]
          Length = 351

 Score =  368 bits (946), Expect = e-100,   Method: Composition-based stats.
 Identities = 157/355 (44%), Positives = 223/355 (62%), Gaps = 8/355 (2%)

Query: 117 ILRRSPIVNVVVGPQTYYRLPELLERARFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRG 175
           +  R+P V+VV GPQT +RLPE+++ AR  +   VD  +   +KF+ L        R  G
Sbjct: 1   MRDRAPYVDVVFGPQTLHRLPEMIDAARITRLPQVDVSFPEIEKFDHLP-----EPRVDG 55

Query: 176 VTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW 235
            +A++++ EGC K+CTFCVVPYTRG E+SR    V+ E   L +NGV E+TLLGQNVN +
Sbjct: 56  PSAYVSVMEGCSKYCTFCVVPYTRGEEVSRPFDDVLSEVIHLAENGVREVTLLGQNVNGY 115

Query: 236 RGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPV 295
           RG   DG     +DL+  ++ + G+ R+RYTTSHP + SD LI+AH ++  L+ +LHLPV
Sbjct: 116 RGTTHDGRVADLADLIRVVAAVDGIDRIRYTTSHPLEFSDSLIQAHAEVPELVKHLHLPV 175

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
           QSGSDRIL +M R HT  EY+  + ++R+  P I+ISSDFIVGFPGET+ DF  TM L++
Sbjct: 176 QSGSDRILAAMKRNHTTLEYKSRLRKLRAAVPGISISSDFIVGFPGETEKDFDNTMKLIE 235

Query: 356 KIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIE 415
            +G+  +FSF YSPR GTP +++ +   E +K ERL  LQ +L +Q    +   VG I  
Sbjct: 236 DVGFDFSFSFVYSPRPGTPAADLKDDTPEALKKERLAALQHRLNQQGFEISRQMVGSIQR 295

Query: 416 VLIEKHG-KEKGKLVGRSPWLQSVVLNSKNH-NIGDIIKVRITDVKISTLYGELV 468
           +L+  +  K+ G+L GR+   + V     N   IG    V I D +  +L G L+
Sbjct: 296 ILVTDYSKKDPGELQGRTENNRIVNFRCNNPKLIGQFANVHIDDAQPHSLRGSLL 350


>gi|15644605|ref|NP_229658.1| hypothetical protein TM1862 [Thermotoga maritima MSB8]
 gi|81553760|sp|Q9X2H6|RIMO_THEMA RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|4982447|gb|AAD36924.1|AE001823_6 conserved hypothetical protein [Thermotoga maritima MSB8]
          Length = 430

 Score =  368 bits (946), Expect = e-100,   Method: Composition-based stats.
 Identities = 132/447 (29%), Positives = 212/447 (47%), Gaps = 22/447 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R  +K  GC  N  D   +  +    G+E V  + DAD++VL+TC   E A  +    + 
Sbjct: 2   RVGIKVLGCPKNEADCEVLAGVLREGGHEIVFDVKDADVVVLDTCAFIEDAKRESIDEIF 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
              + K+          +VV GC+ Q   EE+ +  P V+  +G      +   +E    
Sbjct: 62  SFVDAKDQY-----GYKLVVKGCLVQRYYEELKKEIPEVDQWIGVADPEEIANAIE---- 112

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                +    V D+ E +       + +    A++ I +GCD+ CTFC +P  +G   SR
Sbjct: 113 -----NGTDLVPDQPETVYRYRKRIDLEERPYAYVKISDGCDRGCTFCSIPSFKGSLRSR 167

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           S+  +  E   L+  G  EI L+ Q+  +  G  L   K    DLL  L+ + G   +R 
Sbjct: 168 SIEDITREVEDLLKEGKKEIILVAQDTTS-YGIDLY-RKQALPDLLRRLNSLNGEFWIRV 225

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
              HP  +++ +I A  +LD ++ Y  +PVQ GSD+ILK M R  ++ E ++++  IR  
Sbjct: 226 MYLHPDHLTEEIISAMLELDKVVKYFDVPVQHGSDKILKLMGRTKSSEELKKMLSSIRER 285

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            PD  + +  IVGFPGET++DF      V++I + +  +F YS   GT   N+ E+VD  
Sbjct: 286 FPDAVLRTSIIVGFPGETEEDFEELKQFVEEIQFDKLGAFVYSDEEGTVAFNLKEKVDPE 345

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVLN 441
           +   R   L     E   S  D  VG+ ++ L+E  GKE   LVGR+    P +  VV  
Sbjct: 346 MAKRRQEELLLLQAEISNSRLDRFVGKKLKFLVE--GKEGKFLVGRTWTEAPEVDGVVFV 403

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                IGD ++V I +     ++G ++
Sbjct: 404 RGKGKIGDFLEVVIKEHDEYDMWGSVI 430


>gi|257456801|ref|ZP_05621985.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Treponema vincentii ATCC
           35580]
 gi|257445807|gb|EEV20866.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Treponema vincentii ATCC
           35580]
          Length = 456

 Score =  368 bits (946), Expect = e-100,   Method: Composition-based stats.
 Identities = 144/460 (31%), Positives = 248/460 (53%), Gaps = 21/460 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           ++F+++YGCQMN  +S  +E +   +G+E    +   +L+++NTC +R  A  +V+  LG
Sbjct: 2   KYFIETYGCQMNFAESAALEQLLRERGWEAAEDIQHCNLLIVNTCSVRITAETRVFGRLG 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGP---QTYYRLPELLER 142
               +K  +     D  +++ GC+AQ   +EI  + P+++ VVG      + ++ + +ER
Sbjct: 62  LFSAMKKKQ-----DFTIILMGCMAQRLHDEIKSKFPLLDYVVGMFERDQFTKIFDAVER 116

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT-----AFLTIQEGCDKFCTFCVVPY 197
             F +  V  +  +     + S  +  Y  +R  T     +F+ I  GC+ FCT+C+VPY
Sbjct: 117 ETFWEGSVAGNAKLASFCPQSSNEERYYFSERSYTEGTFQSFVPIMNGCNNFCTYCIVPY 176

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLS- 255
            RG EISR +  ++DE   L   GV EITLLGQNVN++ G     G K  F  LL ++S 
Sbjct: 177 IRGREISRPVESILDEITFLSGKGVKEITLLGQNVNSYHGIDPTSGSKVNFPALLRAVSQ 236

Query: 256 ---EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
              +   +  +R+ +SHP+D+SD LI+   +   +   LHLPVQ+GSD +L  MNR +T 
Sbjct: 237 TCTKQDVIKWIRFISSHPKDLSDELIEVMAEDPRVCKSLHLPVQNGSDEVLARMNRGYTV 296

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
            +Y +I++++R+  P+I +++D ++GFPGET  +F  T+DL+  + +  AF + Y+PR G
Sbjct: 297 EQYLKIVEKLRNRIPNIVLTTDILIGFPGETQAEFEKTLDLMRTVQFDSAFMYHYNPREG 356

Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGR 431
           T   N  +++ +  +  RL  +    +          VG  + +L+E   +    +L G 
Sbjct: 357 TKAYNFPDRIPDAERINRLQQVIDLQQSITDLKMQQRVGSTVMMLVESQSRNNPDELFGH 416

Query: 432 SPWLQSVVL--NSKNHNIGDIIKVRITDVKISTLYGELVV 469
           +   +  VL       +IG  +KV++  +K  T     VV
Sbjct: 417 TEQGEMAVLAEKCDPKHIGHFMKVQLQSIKGKTFRAVPVV 456


>gi|123967655|ref|YP_001008513.1| Fe-S oxidoreductase [Prochlorococcus marinus str. AS9601]
 gi|238066469|sp|A2BNP5|RIMO_PROMS RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|123197765|gb|ABM69406.1| possible Fe-S oxidoreductase [Prochlorococcus marinus str. AS9601]
          Length = 454

 Score =  368 bits (946), Expect = e-100,   Method: Composition-based stats.
 Identities = 126/453 (27%), Positives = 218/453 (48%), Gaps = 26/453 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +      GC+ N+ D+  M+ +   +GYE  ++++DA+++V+NTC   E A E+    + 
Sbjct: 15  KVAFSHVGCEKNLVDTEHMQGLLDKEGYEVDSNINDANVVVVNTCSFIETAREESIRKIL 74

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                            V+VAGC+AQ   +E++R  P +  +VG   Y ++ ++L+R   
Sbjct: 75  EY---------TNQGKEVIVAGCMAQHFKDELIREIPEIKGLVGTGDYQKIAKVLDRVEQ 125

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G+ V +     E   +        +  K    A+L I EGC+  C FC++P  RG + SR
Sbjct: 126 GEIVNEVSKIPEFIADEEMP---RFVDKNKFVAYLRIAEGCNYNCAFCIIPKLRGPQRSR 182

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           ++  +V EA+ L   G+ EI L+ Q +    G+ + G K + + LL  LS++  +  +R 
Sbjct: 183 TIESIVSEAKSLAKKGIQEIILISQ-ITTNYGQDIYG-KPSLAKLLNELSKV-SIPWIRI 239

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
             ++P  ++D +I+A  D   ++PY  LP+Q     +LKSMNR   A     I+++IR  
Sbjct: 240 HYAYPTGLTDEVIRAFKDSKNIVPYFDLPLQHSHPDVLKSMNRPWQASLNESILEKIREE 299

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P   + +  IVGFPGE  + F   +  +D+  +     F +SP  GT   ++  +V   
Sbjct: 300 IPSAVLRTSLIVGFPGEKKEHFEHLLQFLDRHKFDHVGVFIFSPEEGTTAFHLPNKVSLE 359

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVLN 441
           V   R   +    +      N   VG  +++L+EK   +  +L+GRS    P +   V+ 
Sbjct: 360 VAEARKDNVISVQQNISKDKNQTYVGSKMKILVEKIS-DNNELIGRSYNFAPEIDGTVIL 418

Query: 442 SKNHN------IGDIIKVRITDVKISTLYGELV 468
           S          IG  ++  IT      LYGE++
Sbjct: 419 SVKDKIDLKNYIGKFVEANITFADEYDLYGEII 451


>gi|332285816|ref|YP_004417727.1| hypothetical protein PT7_2563 [Pusillimonas sp. T7-7]
 gi|330429769|gb|AEC21103.1| hypothetical protein PT7_2563 [Pusillimonas sp. T7-7]
          Length = 438

 Score =  368 bits (946), Expect = e-100,   Method: Composition-based stats.
 Identities = 122/459 (26%), Positives = 202/459 (44%), Gaps = 33/459 (7%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           +   +    S GC   + DS R+     ++GY      D+AD++V+NTC   + A  +  
Sbjct: 1   MSSPKVGFVSLGCPKALVDSERILTQLRTEGYAITPDYDNADVVVVNTCGFIDSAKAESL 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             +G              +  V+V GC+   E   I    P V  V GPQ Y ++   + 
Sbjct: 61  DAIGEA---------IAENGKVIVTGCMGVEE-SLIRDVHPAVLAVTGPQQYEQVVRAVH 110

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
            A       D    +        +   G        A+L I EGC+  C+FC++P  RG 
Sbjct: 111 EAAPPNLSHDPYIDL--------VPPQGIKLTPRHYAYLKISEGCNHRCSFCIIPSMRGN 162

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYS 253
            +SR +  V+ EA +L+  GV E+ ++ Q+ +A+      R    +G   K   + L  +
Sbjct: 163 LVSRPIGDVMGEAERLVKAGVKELLVISQDTSAYGVDVKFRSGFWNGRPIKTHMTQLSEA 222

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
           L+      RL Y   +P       + A G    ++PYL +P Q  S +ILK+M R     
Sbjct: 223 LAGFGVWTRLHYVYPYPHVDEVIPLMADG---KILPYLDIPFQHASPKILKAMKRPAFED 279

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
                I   R   PD+ + S FIVGFPGET++DF+  +D + +    +   F+YSP  G 
Sbjct: 280 RTLARIKNWRETCPDLTLRSTFIVGFPGETEEDFQYLLDWMTEAQLDRVGCFQYSPVEGA 339

Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGR 431
             + + + V + VK ER        +    +     +G+ I+VLI++   +   G+    
Sbjct: 340 RANELADHVPDEVKQERWDRFMAHQQAISTARLANKIGREIDVLIDEIDDDGAIGRSSAD 399

Query: 432 SPWLQSVVLNSKN--HNIGDIIKVRITDVKISTLYGELV 468
           +P +   V  S +     GD+++VR+TD     LY + +
Sbjct: 400 APEIDGNVFVSSDKVLKPGDMVRVRVTDSDEYDLYADAI 438


>gi|253996254|ref|YP_003048318.1| 30S ribosomal protein S12 methylthiotransferase [Methylotenera
           mobilis JLW8]
 gi|253982933|gb|ACT47791.1| MiaB-like tRNA modifying enzyme YliG [Methylotenera mobilis JLW8]
          Length = 451

 Score =  368 bits (946), Expect = e-100,   Method: Composition-based stats.
 Identities = 133/470 (28%), Positives = 212/470 (45%), Gaps = 41/470 (8%)

Query: 13  MVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHI 72
           M      +   P+  FV S GC     D+ R+     ++GYE   S  +ADL+V+NTC  
Sbjct: 1   MTMSTTSKNSTPKVGFV-SLGCPKAGSDAERILTQLRAEGYEISGSYGEADLVVVNTCGF 59

Query: 73  REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT 132
            + A E+    +G              +  V+V GC+   +G  +    P V  V GP  
Sbjct: 60  IDSAVEESLDAIGEA---------INKNGKVIVTGCLGAKKG-VVEAAHPSVLAVTGPHA 109

Query: 133 YYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTF 192
              +   +                 + F  L +   G        A+L I EGC+  C+F
Sbjct: 110 LEEVMTAVHANLP---------KPHEPFIDL-VPPQGVRLTPKHYAYLKISEGCNHRCSF 159

Query: 193 CVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--K 244
           C++P  RG  +SR + +V++EA  L++ GV EI ++ Q+ +A+      R    +G   K
Sbjct: 160 CIIPSMRGDLVSRPIGEVLNEAENLVNAGVSEILVISQDTSAYGVDVKYRPGFWNGRPVK 219

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304
              ++L  +LSE+    RL Y   +P       + A G   +++PYL +P Q  S RILK
Sbjct: 220 TRMTELTQALSELGVWTRLHYVYPYPHVDEVIPLMADG---LILPYLDVPFQHASPRILK 276

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
           +M R  ++      I   R + PDI I S FI GFPGET+DDF+  +D +++    +   
Sbjct: 277 AMKRPASSENNLARIKAWRDICPDITIRSTFIAGFPGETEDDFKQLLDFMEEAQLDRVGC 336

Query: 365 FKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE 424
           F YS   G   + + +QV E VK ERL    +       +   A +G I  VL+++   +
Sbjct: 337 FAYSAVDGAAANALPDQVPEEVKQERLSRFMEVQERISAAKVHAKIGSIQTVLVDEIVTD 396

Query: 425 ---KGKLVGRS----PWLQSVVL--NSKNHNIGDIIKVRITDVKISTLYG 465
                + +GR+    P +  VV   +++  N GD ++V I       L G
Sbjct: 397 VEGNVEAIGRTKADAPEIDGVVYLEDAEGLNPGDFVEVEIYSADGHDLRG 446


>gi|213158375|ref|YP_002319673.1| hypothetical protein AB57_2321 [Acinetobacter baumannii AB0057]
 gi|301346284|ref|ZP_07227025.1| ribosomal protein S12 methylthiotransferase [Acinetobacter
           baumannii AB056]
 gi|301595689|ref|ZP_07240697.1| ribosomal protein S12 methylthiotransferase [Acinetobacter
           baumannii AB059]
 gi|238065267|sp|B7I9V4|RIMO_ACIB5 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|213057535|gb|ACJ42437.1| conserved hypothetical protein [Acinetobacter baumannii AB0057]
          Length = 447

 Score =  368 bits (946), Expect = e-100,   Method: Composition-based stats.
 Identities = 123/459 (26%), Positives = 206/459 (44%), Gaps = 37/459 (8%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC   + DS R+     + GY+  +  D ADL+V+NTC   E A ++    +G
Sbjct: 5   KVGFVSLGCPKALVDSERILTQLKTDGYQVASDYDGADLVVVNTCGFIESAVQESLDAIG 64

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                         +  V+V GC+   + ++I +  P V  V G   Y  + E +     
Sbjct: 65  EA---------MSENGRVIVTGCLG-KDEDKIRQMHPNVLKVTGAAAYQDVMEAVHEY-- 112

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                      +       + + G        A+L I EGC+  CTFC++P  RG  +SR
Sbjct: 113 ------VPAPPKHNPFIDLVPEQGIRLTPKHYAYLKISEGCNHRCTFCIIPSMRGDLVSR 166

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYSLSEI 257
            +  V++EA  L   GV EI ++ Q+ +A+      +    +G+  K  F D+  +L ++
Sbjct: 167 PVGSVLEEAAALKRAGVKEILVISQDTSAYGVDTKYKLDFWNGQPVKTKFFDMCEALGQL 226

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
              VRL Y   +P   +   + A G    ++PYL +P Q  S R+LK M R   +    +
Sbjct: 227 GIWVRLHYVYPYPHVDAVIDLMAQG---KILPYLDIPFQHASPRVLKLMKRPAHSENTLE 283

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
            I   R   P++ I S F+VGFPGET++DF+  +D + +    +   F YSP  G   ++
Sbjct: 284 KIKLWREKCPNLVIRSTFVVGFPGETEEDFQILLDWLVEAQLDRVGCFTYSPVEGATAND 343

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----P 433
           + + V E +K ER     +  ++   +     +GQ + VL++    E    V RS    P
Sbjct: 344 LPDHVPEEIKQERYERFMQVQQQISAAKLQKRIGQTMTVLVDSLEDEYPVAVARSYADAP 403

Query: 434 WLQSVVL----NSKNHNIGDIIKVRITDVKISTLYGELV 468
            +   V     +      GD+++V ITD     L+ +L+
Sbjct: 404 EIDGNVFVEDIDKSTIQPGDMLEVEITDADEYDLFAKLI 442


>gi|170733145|ref|YP_001765092.1| ribosomal protein S12 methylthiotransferase [Burkholderia
           cenocepacia MC0-3]
 gi|238065302|sp|B1JT65|RIMO_BURCC RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|169816387|gb|ACA90970.1| MiaB-like tRNA modifying enzyme YliG [Burkholderia cenocepacia
           MC0-3]
          Length = 453

 Score =  368 bits (946), Expect = e-100,   Method: Composition-based stats.
 Identities = 127/469 (27%), Positives = 208/469 (44%), Gaps = 48/469 (10%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC   + DS ++     ++GYE   S D ADL+V+NTC   ++A ++    +G
Sbjct: 6   KVGFVSLGCPKALVDSEQIITQLRAEGYEISGSYDGADLVVVNTCGFIDEAVQESLDAIG 65

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEE----ILRRSPIVNVVVGPQTYYRLPELLE 141
                            V+V GC+           I    P V  V GP     + + + 
Sbjct: 66  EALTENGK---------VIVTGCLGAKSSASGSNLIEEVHPKVLAVTGPHAVGEVMQAVH 116

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
                           D F  L    G     R   A+L I EGC+  CTFC++P  RG 
Sbjct: 117 SHLP---------KPHDPFVDLVPAAGIKLTPRHY-AYLKISEGCNHRCTFCIIPSMRGD 166

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYS 253
            +SR +++V+ EA  L  +GV E+ ++ Q+ +A+      R    +G+  K   +DL+ +
Sbjct: 167 LVSRPVAEVMLEAENLFKSGVKELLVISQDTSAYGVDVKYRTGFWNGKPIKTRMTDLVAA 226

Query: 254 LSEI----KGLVRLRYTTSHPRDMSDCLIKAHGDLD-VLMPYLHLPVQSGSDRILKSMNR 308
           L E+       VRL Y   +P       + A G     ++PYL +P Q     +LK M R
Sbjct: 227 LGELAAQYGAWVRLHYVYPYPSVDEVIPLMAEGPFKGHVLPYLDVPFQHAHPEVLKRMKR 286

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
              A +  + + + R + PD+ I S FI GFPGET++ F   +D + +    +   F YS
Sbjct: 287 PANAEKVLERVQKWREICPDLTIRSTFIAGFPGETEEQFETLLDFIREAELDRVGCFAYS 346

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL 428
           P  G   +++   + + V+ ER     +   E   +     +G+ ++VLI++   E G  
Sbjct: 347 PVEGATANDLDGALPDEVREERRARFMEVAEEVSANRMQRKIGKTLKVLIDEVSAEGG-- 404

Query: 429 VGRS----PWLQSVVLN------SKNHNIGDIIKVRITDVKISTLYGEL 467
           +GR+    P +  VV        SK + +GD + V+IT      L+GE+
Sbjct: 405 IGRTAADAPEIDGVVYVEPAAKASKRYKVGDFVSVKITGADGHDLWGEV 453


>gi|319424938|gb|ADV53012.1| MiaB-like tRNA modifying enzyme YliG [Shewanella putrefaciens 200]
          Length = 472

 Score =  368 bits (946), Expect = e-100,   Method: Composition-based stats.
 Identities = 135/472 (28%), Positives = 212/472 (44%), Gaps = 37/472 (7%)

Query: 11  AHMVSQIVDQCIVP-QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNT 69
           A  +       + P  R    S GC  N+ DS R+       GYE  NS D+ADL+++NT
Sbjct: 18  AKTLEAASTNAVTPGNRIGFVSLGCPKNLVDSERILTQLRIDGYEVTNSYDNADLVIVNT 77

Query: 70  CHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG 129
           C   + A E+    +                  V+V GC+  A+  +I    P V  + G
Sbjct: 78  CGFIDAAVEESLDAVREALEENGK---------VIVTGCLG-AKENQIREVHPDVLEITG 127

Query: 130 PQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKF 189
           P +Y  + + + +               + F  L I   G        A+L I EGCD  
Sbjct: 128 PHSYEAVLKHVHKY--------VPKPEHNPFTSL-IPQTGVKLTPKHYAYLKISEGCDNR 178

Query: 190 CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE------ 243
           CTFC++P  RG   SR    ++DEA++L+++GV EI ++ Q+ +A  GK   G       
Sbjct: 179 CTFCIIPSLRGDLDSRPAGSILDEAKRLVESGVQEILVVSQDTSA-YGKDKGGRTDFWDG 237

Query: 244 ---KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300
              K   + L   L ++   VRL Y   +P       + A G   +++PYL +P+Q  S 
Sbjct: 238 MPVKQDITSLARQLGKMGAWVRLHYIYPYPWVDDLIPLMAEG---LILPYLDIPMQHASP 294

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
           RILK M R        + I R R + PD+ I S FIVGFPGET++DF+  +D + +    
Sbjct: 295 RILKMMKRPGRVDRQLEAIQRWREICPDLVIRSTFIVGFPGETEEDFQILLDFLKEARLD 354

Query: 361 QAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
           +   FKYS   G   + + E + E VK +R     +   E         VG+ +++LI+ 
Sbjct: 355 RVGCFKYSEVDGAVANTIAELISEEVKEDRYHRFMELQAEISAERLARFVGRTLDILIDD 414

Query: 421 HGKEK--GKLVGRSPWLQSVVLNSK--NHNIGDIIKVRITDVKISTLYGELV 468
             +E   G+    +P +  +V  +       G +++ RIT      L+ E+V
Sbjct: 415 VDEEGAIGRSFADAPEIDGMVFINGETELEPGMLVRARITHSDEHDLWAEVV 466


>gi|325122523|gb|ADY82046.1| MiaB-like tRNA modifying enzyme YliG [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 447

 Score =  368 bits (946), Expect = e-100,   Method: Composition-based stats.
 Identities = 124/459 (27%), Positives = 207/459 (45%), Gaps = 37/459 (8%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC   + DS R+     ++GY+  +  D ADL+V+NTC   E A ++    +G
Sbjct: 5   KVGFVSLGCPKALVDSERILTQLKTEGYQVASDYDGADLVVVNTCGFIESAVQESLDAIG 64

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                         +  V+V GC+   + ++I +  P V  V G   Y  + E +     
Sbjct: 65  EA---------MSENGRVIVTGCLG-KDEDKIRQMHPNVLKVTGAAAYQDVMEAVHEY-- 112

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                      +       + + G        A+L I EGC+  CTFC++P  RG  +SR
Sbjct: 113 ------VPAPPKHNPFVDLVPEQGIRLTPKHYAYLKISEGCNHRCTFCIIPSMRGDLVSR 166

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYSLSEI 257
            +  V++EA  L   GV EI ++ Q+ +A+      +    +G+  K  F D+  +L ++
Sbjct: 167 PVGSVLEEAAALKRAGVKEILVISQDTSAYGVDTKYKLDFWNGQPVKTKFFDMCEALGQL 226

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
              VRL Y   +P   +   + A G    ++PYL +P Q  S R+LK M R   +    +
Sbjct: 227 GIWVRLHYVYPYPHVDAVIDLMAQG---KILPYLDIPFQHASPRVLKLMKRPAHSENTLE 283

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
            I   R   PD+ I S F+VGFPGET++DF+  +D + +    +   F YSP  G   ++
Sbjct: 284 KIKLWREKCPDLVIRSTFVVGFPGETEEDFQILLDWLVEAELDRVGCFTYSPVEGATAND 343

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----P 433
           + + V E +K ER     +  ++   +     +GQ + VL++    E    V RS    P
Sbjct: 344 LPDHVPEEIKQERYERFMQVQQQISAAKLQKRIGQTMTVLVDSLEDEYPVAVARSYADAP 403

Query: 434 WLQSVVL----NSKNHNIGDIIKVRITDVKISTLYGELV 468
            +   V     +      GD+++V ITD     L+ +L+
Sbjct: 404 EIDGNVFVEDIDKSTIQPGDMLEVEITDADEYDLFAKLI 442


>gi|73749069|ref|YP_308308.1| (dimethylallyl)adenosine tRNA methylthiotransferase
           [Dehalococcoides sp. CBDB1]
 gi|123619987|sp|Q3ZYS0|MIAB_DEHSC RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|73660785|emb|CAI83392.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Dehalococcoides sp.
           CBDB1]
          Length = 418

 Score =  368 bits (946), Expect = e-100,   Method: Composition-based stats.
 Identities = 151/443 (34%), Positives = 232/443 (52%), Gaps = 34/443 (7%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           +++ + GCQMN  +S R+  +F   GY   +  +DA+L+++N+C +RE A  KV + L  
Sbjct: 4   YYLWTIGCQMNQAESDRLGRLFELWGYSLADKAEDAELVLVNSCVVREHAENKVVNRLHL 63

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           +R+LKN        L + + GC+   +   I ++ P V+ + GP +     E+       
Sbjct: 64  LRSLKNK----NPKLKIALTGCLVGQDISLIKKKFPFVDYIFGPGSMPDWREI------- 112

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
                                     +  V+A +TI +GC+ FCT+CVVPY RG E SRS
Sbjct: 113 ------------------PEGFILPLRPPVSANVTIMQGCNNFCTYCVVPYRRGREKSRS 154

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
           ++++  E  +L+  G  E+ LLGQNV++  G  L  EK   +DLL +L +I GL+R+R+ 
Sbjct: 155 IAEIGCEVAELVRRGSREVVLLGQNVDS-YGHDLP-EKPCLADLLSALHDITGLLRIRFL 212

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
           TSHP+D+S  LI A   L  +   L LPVQSG D IL SM R +T  +YR++++RI++  
Sbjct: 213 TSHPKDISQKLIDAMAHLPKVCRSLSLPVQSGDDTILASMRRGYTNQQYRELVERIKTAM 272

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN-MLEQVDEN 385
           PDI++ +D IVGFP E ++ F  +  L+  IGY       YSPR  T  +  M + V   
Sbjct: 273 PDISLQTDLIVGFPSENEEQFNQSYKLMADIGYDAIHVAAYSPRPQTVAARDMADDVPVI 332

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445
            K  RL  ++   +E     N A +    EVL+E   K   K  GR+   + V L S   
Sbjct: 333 EKKRRLKLIEDLQKETVGKANAALMDTFAEVLVEGLQK--NKWQGRTLGGKLVFLESDLP 390

Query: 446 NIGDIIKVRITDVKISTLYGELV 468
             G ++KV+I      +L  +LV
Sbjct: 391 LEGCLVKVKIFKTSPWSLQAKLV 413


>gi|154149237|ref|YP_001406094.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Campylobacter hominis
           ATCC BAA-381]
 gi|229890468|sp|A7I0Q3|MIAB_CAMHC RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|153805246|gb|ABS52253.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Campylobacter hominis
           ATCC BAA-381]
          Length = 429

 Score =  368 bits (946), Expect = e-100,   Method: Composition-based stats.
 Identities = 150/447 (33%), Positives = 240/447 (53%), Gaps = 21/447 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +  ++++ GC MNV DS  +      + Y+  + +  ADLI++NTC +REK   K++S +
Sbjct: 2   KLLYLQTLGCAMNVRDSEHIVAELKDE-YKLTDDISKADLILINTCSVREKPVHKLFSEI 60

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           G    ++ +  K      + V GC A   GEEI  ++P V+ V+G +   ++ E ++  +
Sbjct: 61  GAFNKVRKNGSK------IGVCGCTASHLGEEIFNKAPFVDFVLGARNVSKISEAVKTPK 114

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
           F    ++ D S     E          R     AF+ I  GCDK C++C+VP TRG EIS
Sbjct: 115 FISTDINYDESEFAFGEF---------RGSPYKAFVNIMIGCDKKCSYCIVPQTRGKEIS 165

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD--GEKCTFSDLLYSLSEIKGLVR 262
                +++EA K + NG  EI LLGQNVN   GK      EK  FSDLL  +SEIKG+ R
Sbjct: 166 IPAEIILNEASKAVQNGAKEIFLLGQNVN-NYGKFFSSRHEKMDFSDLLVKISEIKGVER 224

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+T+ HP  M D  +        +   +H+P+QSGS ++L+ M R +    +     R+
Sbjct: 225 IRFTSPHPLHMDDKFLDIFTSNPKICKSMHMPLQSGSTKVLRDMRRGYDKEWFLNRALRL 284

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R + P+++IS+D IV +P E++DDF+ TM++++++ + Q FSFK+SPR  T   N+   +
Sbjct: 285 RKMCPEVSISTDIIVAYPTESEDDFKDTMEVLNEVKFEQIFSFKFSPRPLTAAENLP-LI 343

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
           D  + ++RL  LQ +  E         VG+I +V  E+  +  G++ GRS     V +  
Sbjct: 344 DNEIASKRLEILQSRHNEILDEIMKNQVGKIFDVYFEEL-RANGEVAGRSFSNFLVSVKG 402

Query: 443 KNHNIGDIIKVRITDVKISTLYGELVV 469
               +G I+ VRI       LYG++  
Sbjct: 403 SEDLLGKILPVRIEKASRMVLYGKITA 429


>gi|78048443|ref|YP_364618.1| ribosomal protein S12 methylthiotransferase [Xanthomonas campestris
           pv. vesicatoria str. 85-10]
 gi|123771309|sp|Q3BRJ5|RIMO_XANC5 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|78036873|emb|CAJ24566.1| MiaB-family RNA modification enzyme [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
          Length = 458

 Score =  368 bits (946), Expect = e-100,   Method: Composition-based stats.
 Identities = 131/458 (28%), Positives = 212/458 (46%), Gaps = 39/458 (8%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC   + DS R+      +GY+ V S D AD++V+NTC   + A  +    +G
Sbjct: 7   KVGFVSLGCPKALVDSERILTQLRVEGYDIVPSYDAADVVVVNTCGFIDSAVTESLDAIG 66

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                         +  V+V GC+ +   E+I    P V  V GPQ Y  + E +  A  
Sbjct: 67  EA---------MNANGKVIVTGCLGKR-PEQIREAYPQVLAVSGPQDYQSVMEAVHAALP 116

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            +          D F  L + D G        A+L I EGC+  C+FC++P  RG  +SR
Sbjct: 117 PR---------HDPFVDL-VPDYGIKLTPRHYAYLKISEGCNHRCSFCIIPSMRGDLVSR 166

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSD---------LLYSLSE 256
            + +V+ EA +L+  GV E+ ++ Q+ +A  G  L   +  + D         L   LSE
Sbjct: 167 PVDEVLREAERLVRGGVKELLVVSQDTSA-YGVDLKYAERPWRDRMYQTRMKALCEGLSE 225

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           +    RL Y   +P       + A G    L+PYL +P Q  S RILK M R     +  
Sbjct: 226 LGVWTRLHYVYPYPHVDDVIGLMAEG---RLLPYLDIPFQHASPRILKLMKRPGAVEKTL 282

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
           + + R +++ P+I + S FIVGFPGETD +F + +D +D+    +  +F YSP  G   +
Sbjct: 283 ERVQRWKAMCPEITVRSTFIVGFPGETDAEFESLLDFLDQAQLDRVGAFAYSPVDGASAN 342

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE--KHGKEKGKLVGRSPW 434
            + +QV E VK ERL     K  +      ++ +G + + L++  +      +    +P 
Sbjct: 343 ALPDQVPEEVKHERLARFMAKQAQISALRLESKIGSVQQCLVDVIEDDIAVARSRADAPE 402

Query: 435 LQS-VVLNSKNHN---IGDIIKVRITDVKISTLYGELV 468
           +   V + +       +GD++ V ITD     L+G+ +
Sbjct: 403 IDGLVHIQNGGELGLKVGDLVDVEITDSDEHDLFGDAL 440


>gi|285808313|gb|ADC35844.1| MiaB-like tRNA modifying enzyme YliG [uncultured bacterium 89]
          Length = 495

 Score =  368 bits (945), Expect = e-99,   Method: Composition-based stats.
 Identities = 121/454 (26%), Positives = 200/454 (44%), Gaps = 25/454 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC  N+ DS  M     ++G+E  +  D A+++V+NTC   + A ++    + 
Sbjct: 17  KIGFVSLGCPKNLVDSEVMMGELAARGHELTSQPDQAEVLVVNTCSFIDPAKKESVDTIL 76

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +   K    K G    ++VAGC+ +   ++I ++ P V+ V+G      +  L E    
Sbjct: 77  EMAEYK----KSGRARKLIVAGCLVERYRDDIRKQMPEVDAVIGTNELDSIVALCEDGAA 132

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                    S E        +        G  A++ I EGCD  CTFCV+P  RG   SR
Sbjct: 133 --------LSAEPAPYLYHDLTPRVLATPGHYAYIKIAEGCDHPCTFCVIPQYRGNFRSR 184

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI--KGLVRL 263
               VV EA +L   GV E+ L+GQ+     G+ L G K   ++LL  L++I       +
Sbjct: 185 RFESVVAEATRLFGQGVRELNLIGQDTT-CFGEDL-GIKDGLAELLARLAQIETPWQKWV 242

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R   ++P  ++  L+    +   L+ Y+ +P+Q  S  +LK M R  +   + +++DR+R
Sbjct: 243 RXLYAYPNKVTQKLLDTIAEYPALVKYIDMPLQHASGAVLKRMKRGASGDIFLKLLDRMR 302

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              P + I +  IVGFPGET  DF    D V    +     F YS    +   ++  +VD
Sbjct: 303 RTIPGVTIRTSMIVGFPGETAKDFEELCDFVQAAQFDCLGVFPYSDEDTSASFHLDGKVD 362

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-----GKLVGRSPWLQSV 438
                 R   L    R+     +   VG    VL+E    E      G++ G++P +  V
Sbjct: 363 GRTIYRRKRKLMSLQRKIARKRSRRLVGSETTVLVEGRSPETDLLWQGRMPGQAPEIDGV 422

Query: 439 V----LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                        G++ ++RIT+     + G L+
Sbjct: 423 TLINDFEGGEPRAGEMRRLRITEAHDYDVVGTLL 456


>gi|188577734|ref|YP_001914663.1| hypothetical protein PXO_01247 [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|238055316|sp|B2SWC0|RIMO_XANOP RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|188522186|gb|ACD60131.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae
           PXO99A]
          Length = 460

 Score =  368 bits (945), Expect = e-99,   Method: Composition-based stats.
 Identities = 133/458 (29%), Positives = 211/458 (46%), Gaps = 39/458 (8%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC   + DS R+      +GY+ V S D AD++V+NTC   + A  +    +G
Sbjct: 10  KVGFVSLGCPKALVDSERILTQLRVEGYDIVPSYDAADVVVVNTCGFIDSAVTESLDAIG 69

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                         +  V+V GC+ +   E+I    P V  V GPQ Y  + E +  A  
Sbjct: 70  EA---------MNANGKVIVTGCLGKR-PEQIREAYPQVLAVSGPQDYQSVMEAVHAALP 119

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            +          D F  L + D G        A+L I EGC+  C+FC++P  RG  +SR
Sbjct: 120 PR---------HDPFVDL-VPDYGIKLTPRHYAYLKISEGCNHRCSFCIIPSMRGDLVSR 169

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSD---------LLYSLSE 256
            + +V+ EA +L+  GV E+ ++ Q+ +A  G  L   +  + D         L   LSE
Sbjct: 170 PVDEVLCEAERLVRGGVKELLVVSQDTSA-YGVDLKYAERPWRDRMYQTRMKALCEGLSE 228

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           +    RL Y   +P       + A G    L+PYL +P Q  S RILK M R     +  
Sbjct: 229 LGVWTRLHYVYPYPHVDDVLPLMAEG---KLLPYLDIPFQHASPRILKLMKRPGAVEKTL 285

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
           Q + R +++ P+I + S FIVGFPGETD +F + +D +D+    +  +F YSP  G   +
Sbjct: 286 QRVQRWKAMCPEITVRSTFIVGFPGETDAEFESLLDFLDQAQLDRVGAFAYSPVDGASAN 345

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE--KHGKEKGKLVGRSPW 434
            + + V E VK ERL     K  E      +A +G + + L++  +      +    +P 
Sbjct: 346 ALPDPVPEEVKQERLARFMAKQAEISALRLEAKIGSVQQCLVDLIEDDIAVARSRADAPE 405

Query: 435 LQS-VVLNSKNHN---IGDIIKVRITDVKISTLYGELV 468
           +   V + +       +GD++ V ITD     L+G+ +
Sbjct: 406 IDGLVHIQNGGELGLKVGDLVDVEITDSDEHDLFGDAL 443


>gi|192291328|ref|YP_001991933.1| ribosomal protein S12 methylthiotransferase [Rhodopseudomonas
           palustris TIE-1]
 gi|238066579|sp|B3QIV5|RIMO_RHOPT RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|192285077|gb|ACF01458.1| MiaB-like tRNA modifying enzyme YliG [Rhodopseudomonas palustris
           TIE-1]
          Length = 441

 Score =  368 bits (945), Expect = e-99,   Method: Composition-based stats.
 Identities = 134/462 (29%), Positives = 209/462 (45%), Gaps = 36/462 (7%)

Query: 18  VDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA 77
           + Q   P+  FV S GC   + DS R+     ++GYE     D ADL+++NTC   + A 
Sbjct: 1   MQQATAPKISFV-SLGCPKALVDSERIITRLRAEGYELARKHDGADLVIVNTCGFLDSAK 59

Query: 78  EKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLP 137
           ++  + +G              +  V+V GC+  AE E+I    P V  + GPQ Y  + 
Sbjct: 60  QESLAAIGEA---------MATNGKVIVTGCMG-AEPEQIEAAYPGVLSITGPQQYESVL 109

Query: 138 ELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197
           + + RAR        D           +   G        A+L I EGC+  C+FC++P 
Sbjct: 110 DAVHRARPALHNPHLDL----------VPPQGVRLTPRHYAYLKISEGCNNRCSFCIIPK 159

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE--------KCTFSD 249
            RG  +SR    V+ EA KL+  GV E+ ++ Q+ +A+       E        +  F D
Sbjct: 160 LRGDLVSRPAGDVLREAEKLVAAGVKELLVISQDTSAYGVDVKYAESPWKDRAVRAKFLD 219

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
           L   L E+   VRL Y   +P      +I    D   ++PYL +P Q  S  +LK M R 
Sbjct: 220 LASELGELGAWVRLHYVYPYPHVD--EVIGLMAD-GKVLPYLDIPFQHASPDVLKLMKRP 276

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369
               +    I R R   PD+A+ S FIVGFPGET+ DF   ++ +D+    +  +FKY P
Sbjct: 277 AAQDKTLDRIKRWREQCPDLALRSTFIVGFPGETERDFEFLLEWLDEAEIDRLGAFKYEP 336

Query: 370 RLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK--EKGK 427
             G P + + +Q+ + VK ER   L  + +          VG   +V+I++ G    KG+
Sbjct: 337 VAGAPSNALPDQIADEVKQERWNRLMARQQAISARRLKRKVGTRQQVIIDEIGPTVTKGR 396

Query: 428 LVGRSPWLQSVVLNSK--NHNIGDIIKVRITDVKISTLYGEL 467
               +P +   V  S      +G+I+  +I       L+G +
Sbjct: 397 SKADAPEIDGAVYLSSRRPLRVGEIVTAKIDRADAYDLHGTV 438


>gi|168187871|ref|ZP_02622506.1| conserved hypothetical protein [Clostridium botulinum C str.
           Eklund]
 gi|169294276|gb|EDS76409.1| conserved hypothetical protein [Clostridium botulinum C str.
           Eklund]
          Length = 433

 Score =  368 bits (945), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 137/446 (30%), Positives = 240/446 (53%), Gaps = 17/446 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    + GC++N+Y+S  M + F   GYE V+  + AD+ V+NTC +   + +K    L 
Sbjct: 2   KVAFATLGCRVNMYESEAMAEKFIKNGYEVVDFDEMADVYVVNTCTVTNMSDKKSRQMLS 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R +       ++  + ++   GC  Q   E++ +    V+V++G +    +   + RA+ 
Sbjct: 62  RAK-------RKNPNSVIAAVGCYTQIAPEKV-KEIGDVDVILGTRNKGDIVYWVNRAKE 113

Query: 146 GKRVVDT--DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             + +    D     KFE L+I +     +    AFL IQ+GC+ FC++C++P+ RG   
Sbjct: 114 EDKTIVEVNDVLKNKKFEELNIEEY----QDKTRAFLKIQDGCNNFCSYCLIPFARGAVC 169

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           S++   V+DE +KL  +G  E+ L G ++++  G  L+G+     ++L  + +I G+ R+
Sbjct: 170 SKNPKIVIDEVKKLAAHGFKEVILSGIDISS-YGVDLEGD-WNLLNILKEIDKIDGITRV 227

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R  +  P   ++  I+  G+L  L P+ HL +QSG +  LK MNR++T  E+  +I+ +R
Sbjct: 228 RIGSIGPEFFNEDRIRQIGNLKKLCPHFHLSLQSGCNETLKRMNRKYTIEEFENVINLLR 287

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
               DI+I++D IVGFPGETDD+F+ T + + +I  ++   FKYSPR GT    M +QV+
Sbjct: 288 KYIKDISITTDIIVGFPGETDDEFKKTYEYLKRIKLSKMHIFKYSPRTGTRAEKMEKQVN 347

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKH-GKEKGKLVGRSPWLQSVVLNS 442
            N+K ER   L K     +  F D  +G+ +EVL E+    ++G   G +P    V+  S
Sbjct: 348 GNIKEERSKALIKLNEINEKKFIDKFIGENMEVLYEQQCNNKEGYYEGYTPNYIKVISES 407

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
           K    G I+  ++ + K     G+++
Sbjct: 408 KEDFSGKIVNTKLIETKEEYAIGKII 433


>gi|289669414|ref|ZP_06490489.1| hypothetical protein XcampmN_13164 [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 454

 Score =  368 bits (945), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 132/458 (28%), Positives = 211/458 (46%), Gaps = 39/458 (8%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC   + DS R+      +GY+ V S D AD++V+NTC   + A  +    +G
Sbjct: 7   KVGFVSLGCPKALVDSERILTQLRVEGYDIVPSYDAADVVVVNTCGFIDSAVTESLDAIG 66

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                         +  V+V GC+ +   E+I    P V  V GPQ Y  + E +  A  
Sbjct: 67  EA---------MNANGKVIVTGCLGKR-PEQIREAYPQVLAVSGPQDYQSVMEAVHAALP 116

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            +          D F  L + D G        A+L I EGC+  C+FC++P  RG  +SR
Sbjct: 117 PR---------HDPFVDL-VPDYGIKLTPRHYAYLKISEGCNHRCSFCIIPSMRGDLVSR 166

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSD---------LLYSLSE 256
            + +V+ EA +L+  GV E+ ++ Q+ +A  G  L   +  + D         L   LSE
Sbjct: 167 PVDEVLREAERLVRGGVKELLVVSQDTSA-YGVDLKYAERPWRDRMYQTRMKALCEGLSE 225

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           +    RL Y   +P       + A G    L+PYL +P Q  S RILK M R     +  
Sbjct: 226 LGVWTRLHYVYPYPHVDDVIPLMAEG---KLLPYLDIPFQHASPRILKLMKRPGAVEKTL 282

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
           + + R +++ P+I + S FIVGFPGETD +F + +D +D+    +  +F YSP  G   +
Sbjct: 283 ERVQRWKAMCPEITVRSTFIVGFPGETDAEFESLLDFLDQAQLDRVGAFAYSPVDGAGAN 342

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE--KHGKEKGKLVGRSPW 434
            + + V E VK ERL     K  E      +A +G + + L++  +      +    +P 
Sbjct: 343 ALPDPVPEEVKQERLARFMAKQAEISALRLEAKIGSVQQCLVDLIEDDIAVARSRADAPE 402

Query: 435 LQS-VVLNSKNHN---IGDIIKVRITDVKISTLYGELV 468
           +   V + +       +GD++ V ITD     L+G+ +
Sbjct: 403 IDGLVHIQNGGELGLKVGDLVDVEITDSDEHDLFGDAL 440


>gi|282883211|ref|ZP_06291810.1| protein YqeV [Peptoniphilus lacrimalis 315-B]
 gi|281297023|gb|EFA89520.1| protein YqeV [Peptoniphilus lacrimalis 315-B]
          Length = 431

 Score =  368 bits (945), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 130/449 (28%), Positives = 241/449 (53%), Gaps = 21/449 (4%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDD-ADLIVLNTCHIREKAAEKVY 81
           + + F + + GC++N Y+S  M ++F   GY +V++  D AD+ ++NTC +   +  K  
Sbjct: 1   MAKTFSILTLGCKVNQYESEAMAELFEKNGYIQVDNDTDVADVYIVNTCTVTNLSDRKSR 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
            ++ R +       +E  D  V V GC AQ   +E+  +   V+VV+G     ++ +L+E
Sbjct: 61  QYIRRAK-------RENPDSTVAVVGCYAQVAPKEV-EKIEGVDVVIGTSERSKIVDLIE 112

Query: 142 RARFGKRVVDT--DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
            A+   + ++   D   +  F+ + I +  +  +    +++ +Q+GC+++CT+C++PY R
Sbjct: 113 EAKEEDKKINIVRDIKKDRDFQFIKIDENFHKTR----SYMKVQDGCNRYCTYCIIPYAR 168

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G   SR +   V EA +L + G  EI L G +V ++   G+D       DL+ +++E+ G
Sbjct: 169 GTIRSRRIGDCVREAIRLANAGYKEIILTGIHVGSY---GVDLGPVRLIDLIEAIAEVDG 225

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           + R+R ++  P  +S+  ++       L  + HL +QSGS+++LK MNR +   E+ +  
Sbjct: 226 IERIRLSSVEPNIISEDFMRRAIACSKLCDHFHLSLQSGSNKVLKDMNRHYNREEFIEKT 285

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
             I+   P   +++D IVGFPGE+D+DF  +M +V ++ +++   FKYS R  TP ++  
Sbjct: 286 KIIKKYMPYAGLTTDIIVGFPGESDEDFEDSMSIVREVEFSKVHVFKYSKRKNTPAADRA 345

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV 439
           +QVD N+K +R   L K   +    F +  + + ++VL E+   ++G   G +     V 
Sbjct: 346 DQVDGNIKIKRSEELIKLQDQYLKKFREKNMPRTLKVLFEEF--DQGYYFGYTDNYIRVK 403

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
           + S    I  I+ VR+ D      +GELV
Sbjct: 404 VKSDKDLINKILDVRLVD-NEEVAFGELV 431


>gi|206560219|ref|YP_002230983.1| ribosomal protein S12 methylthiotransferase [Burkholderia
           cenocepacia J2315]
 gi|238065304|sp|B4EAF5|RIMO_BURCJ RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|198036260|emb|CAR52156.1| radical SAM superfamily protein [Burkholderia cenocepacia J2315]
          Length = 453

 Score =  368 bits (945), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 129/469 (27%), Positives = 209/469 (44%), Gaps = 48/469 (10%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC   + DS ++     ++GYE   + D ADL+V+NTC   ++A ++    +G
Sbjct: 6   KVGFVSLGCPKALVDSEQIITQLRAEGYEISGTYDGADLVVVNTCGFIDEAVQESLDAIG 65

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEE----ILRRSPIVNVVVGPQTYYRLPELLE 141
                            V+V GC+           I    P V  V GP     + + + 
Sbjct: 66  EALTENGK---------VIVTGCLGAKSSASGSNLIEEVHPKVLAVTGPHAVGEVMQAVH 116

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
                           D F  L    G     R   A+L I EGC+  CTFC++P  RG 
Sbjct: 117 SHLP---------KPHDPFVDLVPAAGIKLTPRHY-AYLKISEGCNHRCTFCIIPSMRGD 166

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYS 253
            +SR +++V+ EA  L  +GV E+ ++ Q+ +A+      R    +G+  K   +DL+ +
Sbjct: 167 LVSRPVAEVMLEAENLFKSGVKELLVISQDTSAYGVDVKYRTGFWNGKPIKTRMTDLVAA 226

Query: 254 LSEI----KGLVRLRYTTSHPRDMSDCLIKAHGDLD-VLMPYLHLPVQSGSDRILKSMNR 308
           L E+       VRL Y   +P       + A G     ++PYL +P Q     +LK M R
Sbjct: 227 LGELAAQYGAWVRLHYVYPYPSVDEVIPLMAEGPFKGHVLPYLDVPFQHAHPEVLKRMKR 286

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
              A +  + + + R + PD+ I S FI GFPGET++ F   +D V +    +   F YS
Sbjct: 287 PANAEKVLERVQKWREICPDLTIRSTFIAGFPGETEEQFETLLDFVREAELDRVGCFAYS 346

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL 428
           P  G   +++   + + V+ ER     +   E         VG+ ++VLI++ G+E G  
Sbjct: 347 PVEGATANDLDGALPDEVREERRARFMEVAEEVSAHRMQRKVGKTLKVLIDEVGEEGG-- 404

Query: 429 VGRS----PWLQSVVLN------SKNHNIGDIIKVRITDVKISTLYGEL 467
           +GR+    P +  VV        SK + +GD + V+IT      L+GE+
Sbjct: 405 IGRTAADAPEIDGVVYVEPAAKASKRYKVGDFVSVKITGADGHDLWGEV 453


>gi|332662118|ref|YP_004444906.1| 30S ribosomal protein S12 methylthiotransferase rimO
           [Haliscomenobacter hydrossis DSM 1100]
 gi|332330932|gb|AEE48033.1| Ribosomal protein S12 methylthiotransferase rimO [Haliscomenobacter
           hydrossis DSM 1100]
          Length = 437

 Score =  368 bits (945), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 122/453 (26%), Positives = 222/453 (49%), Gaps = 34/453 (7%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNS--MDDADLIVLNTCHIREKAAEKVYSF 83
           +  V + GC  N+ DS  +        ++ V+    +DA+++++NTC   + A ++    
Sbjct: 10  KVNVITLGCSKNLVDSENLITQLRGNDFDVVHDSQEEDANVVIINTCGFIDLAKQESIDT 69

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +     +K    K GG   + V GC++Q   E++    P V+   G      LP LL + 
Sbjct: 70  ILEYAEVK----KAGGIDKLFVTGCLSQRYKEDLELEIPEVDAYFGT---LELPGLLAK- 121

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
                 ++ DY  E   ERL      Y       A+L I EGC++ C+FC +P  RG  +
Sbjct: 122 ------LNADYKHELIGERLITTPMHY-------AYLKISEGCNRTCSFCAIPLMRGGHV 168

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR + ++V EA+ L   GV EI L+ Q +  + G  +  +K     LL++L++++G+  +
Sbjct: 169 SRPIEELVKEAQSLARRGVKEIMLIAQELT-YYGLDIY-KKRDLPRLLHALADVEGIEWI 226

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R   ++P      ++    +   +  YL +P+Q  S+ +L+ M R+ T  E  ++I + R
Sbjct: 227 RLHYAYPSKFPLEILDVIAERPEICNYLDMPLQHASNSVLERMRRQITREETTELIQQAR 286

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              P++ + +  +VG+P E+D +F+   D V ++ + +   F+YS    T   ++ + V 
Sbjct: 287 LRIPNLTLRTTMLVGYPQESDQEFQELCDFVQEMEFDRMGVFQYSHEESTRAYDVDDDVP 346

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQS-V 438
             VKAER   L +  +E     N   VG+  + L ++  KE G  VGR+    P + + V
Sbjct: 347 AEVKAERANALMEIQQEISTRKNFEKVGKTFKTLFDR--KEGGYFVGRTEGDSPEVDNEV 404

Query: 439 VLNSKN--HNIGDIIKVRITDVKISTLYGELVV 469
           ++ +K     IGD  +VRI +     ++GE++ 
Sbjct: 405 LVPAKKNFARIGDFAQVRIAEASEYDIFGEIIA 437


>gi|39935741|ref|NP_948017.1| ribosomal protein S12 methylthiotransferase [Rhodopseudomonas
           palustris CGA009]
 gi|81562562|sp|Q6N6E2|RIMO_RHOPA RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|39649594|emb|CAE28116.1| Protein of unknown function UPF0004:Elongator protein 3/MiaB/NifB
           [Rhodopseudomonas palustris CGA009]
          Length = 441

 Score =  368 bits (945), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 135/462 (29%), Positives = 209/462 (45%), Gaps = 36/462 (7%)

Query: 18  VDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA 77
           + Q   P+  FV S GC   + DS R+     ++GYE     D ADL+++NTC   + A 
Sbjct: 1   MQQATAPKISFV-SLGCPKALVDSERIITRLRAEGYELARKHDGADLVIVNTCGFLDSAK 59

Query: 78  EKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLP 137
           ++  + +G              +  V+V GC+  AE E+I    P V  + GPQ Y  + 
Sbjct: 60  QESLAAIGEA---------MATNGKVIVTGCMG-AEPEQIEAAYPGVLSITGPQQYESVL 109

Query: 138 ELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197
           E + RAR        D           +   G        A+L I EGC+  C+FC++P 
Sbjct: 110 EAVHRARPALHNPHLDL----------VPPQGVRLTPRHYAYLKISEGCNNRCSFCIIPK 159

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE--------KCTFSD 249
            RG  +SR    V+ EA KL+  GV E+ ++ Q+ +A+       E        +  F D
Sbjct: 160 LRGDLVSRPAGDVLREAEKLVAAGVKELLVISQDTSAYGVDVKYAESPWKDRAVRAKFLD 219

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
           L   L E+   VRL Y   +P      +I    D   ++PYL +P Q  S  +LK M R 
Sbjct: 220 LASELGELGAWVRLHYVYPYPHVD--EVIGLMAD-GKVLPYLDIPFQHASPDVLKLMKRP 276

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369
               +    I R R   PD+A+ S FIVGFPGET+ DF   ++ +D+    +  +FKY P
Sbjct: 277 AAQDKTLDRIKRWREQCPDLALRSTFIVGFPGETERDFEFLLEWLDEAEIDRLGAFKYEP 336

Query: 370 RLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK--EKGK 427
             G P + + +Q+ + VK ER   L  + +          VG   +V+I++ G    KG+
Sbjct: 337 VAGAPSNALPDQIADEVKQERWNRLMARQQAISARRLKRKVGTRQQVIIDEIGPTVAKGR 396

Query: 428 LVGRSPWLQSVVLNSK--NHNIGDIIKVRITDVKISTLYGEL 467
               +P +   V  S      +G+I+  +I       L+G +
Sbjct: 397 SKADAPDIDGAVYLSSRRPLRVGEIVTAKIDRADAYDLHGTV 438


>gi|313143333|ref|ZP_07805526.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818]
 gi|313128364|gb|EFR45981.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818]
          Length = 441

 Score =  368 bits (945), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 151/439 (34%), Positives = 242/439 (55%), Gaps = 21/439 (4%)

Query: 36  MNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSR 94
           MN  DS  +       + Y   ++  +ADLI++NTC +REK  +K++S +G+    K S 
Sbjct: 1   MNERDSAHIIAELKEKKQYTLTDNAKEADLILINTCSVREKPEKKLFSEIGQFAKEKKSG 60

Query: 95  IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDY 154
            K      + + GC A   GEEI++++P V+ V+G +   ++ ++L+R     + V+ D 
Sbjct: 61  AK------IGICGCTASHLGEEIIKKAPSVDFVLGARNVSKITQVLDRP----KAVEVDI 110

Query: 155 SVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEA 214
             +D     +          G+ A L I  GCDK C++C+VP+TRG EIS  +  +V+EA
Sbjct: 111 DYDDSTYVFASSQDM-----GIKAHLNISIGCDKKCSYCIVPFTRGKEISIPIDLLVNEA 165

Query: 215 RKLIDNGVCEITLLGQNVNAWRGKG-LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
           +KL+ NG  E+ LLGQNVN +  +     +K  F++LL +LSEI+GL R+R+T+ HP  M
Sbjct: 166 KKLVANGAKELLLLGQNVNHYGVRFSTPHKKTNFTELLATLSEIEGLYRIRFTSPHPLHM 225

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
            D  ++       +   +H+P+QSGS +ILK M R +    Y   I +++S+ P++ I +
Sbjct: 226 DDEFLEEFARNPKIAKGIHIPLQSGSSQILKMMRRGYDKQWYLDRIAKLKSLLPNVGIGT 285

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ--VDENVKAERL 391
           D IVGFP E++ DF  TM+++  + +   +SF YSPR  T   +  +   V + V  ERL
Sbjct: 286 DIIVGFPTESEQDFEDTMEVLSIVEFDTLYSFVYSPRPHTSAYSYDKSMLVPQEVAKERL 345

Query: 392 LCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL--VGRSPWLQSVVLNSKNHNIGD 449
             LQ   ++         +G I EVLIE H  ++G+    GRS   + + +  +   IG 
Sbjct: 346 SRLQNLHKQILQKKAQKEIGSIYEVLIENHRDDEGQTWSEGRSSQNKLIKILGRKCPIGS 405

Query: 450 IIKVRITDVKISTLYGELV 468
           II+V++T      LYGE V
Sbjct: 406 IIQVKVTHNDGGGLYGEFV 424


>gi|289663191|ref|ZP_06484772.1| hypothetical protein XcampvN_08922 [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 454

 Score =  368 bits (945), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 132/458 (28%), Positives = 211/458 (46%), Gaps = 39/458 (8%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC   + DS R+      +GY+ V S D AD++V+NTC   + A  +    +G
Sbjct: 7   KVGFVSLGCPKALVDSERILTQLRVEGYDIVPSYDAADVVVVNTCGFIDSAVTESLDAIG 66

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                         +  V+V GC+ +   E+I    P V  V GPQ Y  + E +  A  
Sbjct: 67  EA---------MNANGKVIVTGCLGKR-PEQIREAYPQVLAVSGPQDYQSVMEAVHAALP 116

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            +          D F  L + D G        A+L I EGC+  C+FC++P  RG  +SR
Sbjct: 117 PR---------HDPFVDL-VPDYGIKLTPRHYAYLKISEGCNHRCSFCIIPSMRGDLVSR 166

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSD---------LLYSLSE 256
            + +V+ EA +L+  GV E+ ++ Q+ +A  G  L   +  + D         L   LSE
Sbjct: 167 PVDEVLREAERLVRGGVKELLVVSQDTSA-YGVDLKYAERPWRDRMYQTRMKALCEGLSE 225

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           +    RL Y   +P       + A G    L+PYL +P Q  S RILK M R     +  
Sbjct: 226 LGVWTRLHYVYPYPHVDDVIPLMAEG---KLLPYLDIPFQHASPRILKLMKRPGAVEKTL 282

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
           + + R +++ P+I + S FIVGFPGETD +F + +D +D+    +  +F YSP  G   +
Sbjct: 283 ERVQRWKAMCPEITVRSTFIVGFPGETDAEFESLLDFLDQAQLDRVGAFAYSPVDGAGAN 342

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE--KHGKEKGKLVGRSPW 434
            + + V E VK ERL     K  E      +A +G + + L++  +      +    +P 
Sbjct: 343 ALPDPVPEEVKQERLARFMAKQAEISALRLEAKIGSVQQCLVDLIEDDIAVARSRADAPE 402

Query: 435 LQS-VVLNSKNHN---IGDIIKVRITDVKISTLYGELV 468
           +   V + +       +GD++ V ITD     L+G+ +
Sbjct: 403 IDGFVHIQNGGELGLKVGDLVDVEITDSDEHDLFGDAL 440


>gi|159902657|ref|YP_001550001.1| Fe-S oxidoreductase [Prochlorococcus marinus str. MIT 9211]
 gi|238066463|sp|A9BCV9|RIMO_PROM4 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|159887833|gb|ABX08047.1| possible Fe-S oxidoreductase [Prochlorococcus marinus str. MIT
           9211]
          Length = 462

 Score =  368 bits (945), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 125/454 (27%), Positives = 215/454 (47%), Gaps = 32/454 (7%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA-AEKVYSFLG 85
                 GC+ N+ D+  M  +  S+GY   ++ DDA+++V+NTC   E+A  E V + +G
Sbjct: 24  VAFLHLGCEKNLVDTEHMMGLLASEGYGVSSNTDDAEVVVVNTCSFIEQAREESVRALVG 83

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                K           +++AGC+AQ    E+L   P    +VG   Y  + E+L+R R 
Sbjct: 84  LADQGKE----------IIIAGCLAQHFKSELLESIPEAKAIVGTGDYQNIIEVLQRVRQ 133

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G+RV     + +   +        Y       ++L + EGC+  C FC++P  RG + SR
Sbjct: 134 GERVNQVSENPKFVGDENLP---RYRTTGRFVSYLKVAEGCNYRCAFCIIPTLRGNQRSR 190

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           S+  +V+EA +L   G+ E+ L+ Q +    G  L G     +DLL +LS +  +  +R 
Sbjct: 191 SVQSIVNEANQLAKEGIQELILISQ-ITTNYGMDLYGRPY-LADLLRALSHVD-IPWIRI 247

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
             ++P  ++  ++ A+ ++  ++PY  LP+Q     +L++MNR   +     +++RI+  
Sbjct: 248 HYAYPTGLTPEVVLAYKEVPNVLPYFDLPLQHSHPDVLRAMNRPWQSDVSSALLNRIKEQ 307

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P+  + +  IVGFPGET   F      V+   +     F +S   GT  + +  QV   
Sbjct: 308 LPEAVMRTTLIVGFPGETKAQFDHLCAFVENQKFDHVGVFAFSREEGTEAAKLPNQVPFE 367

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQS---- 437
           +   R   L    +    + N A +GQ ++VLIE+     G+L+GRS    P +      
Sbjct: 368 IAQARKDKLVAIQQPISAAKNQALIGQTVDVLIEREDLATGELIGRSARFAPEVDGEVRL 427

Query: 438 ----VVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
               V+    N   G I+   IT  ++  L GE+
Sbjct: 428 RPSQVLF---NDLHGKIVPALITGSELYDLTGEI 458


>gi|58697143|ref|ZP_00372571.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Wolbachia endosymbiont of
           Drosophila simulans]
 gi|58536553|gb|EAL59910.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Wolbachia endosymbiont of
           Drosophila simulans]
          Length = 384

 Score =  368 bits (945), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 202/389 (51%), Positives = 274/389 (70%), Gaps = 13/389 (3%)

Query: 80  VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL 139
            YS LG+I +L+         + +VVAGCVAQAEGEE+ RR+P V++VVGPQ+   LPEL
Sbjct: 2   FYSELGKIHSLRKE-------MTIVVAGCVAQAEGEEVFRRAPFVDIVVGPQSIATLPEL 54

Query: 140 LERARFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
           + +A   K  V++TD+    KF++L   D  Y   +G +AFL IQEGCDKFCTFCVVPYT
Sbjct: 55  IVKASRSKGHVINTDFPEVAKFDKLP--DECYGNSQGSSAFLAIQEGCDKFCTFCVVPYT 112

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258
           RG E SR ++++  EA KL+ NG  EI LLGQNVNA+ G+  +GE      L+  +++I+
Sbjct: 113 RGAEYSRPVNEIFREALKLVANGANEINLLGQNVNAYHGE-CEGEVWDLGKLISHIAKIE 171

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
            L R+RYTTSHPRDM + L  AH +   LMP++HLPVQSGS++IL +MNR+HTA EY +I
Sbjct: 172 KLERIRYTTSHPRDMHESLYLAHAEEPKLMPFVHLPVQSGSNKILHAMNRKHTAEEYLEI 231

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           IDR R ++P+I  SSDFIVGFPGET+ DF  TM LV+K+ YAQA+SFKYSPR GTPG+  
Sbjct: 232 IDRFRKLKPEIEFSSDFIVGFPGETEKDFEETMKLVEKVRYAQAYSFKYSPRPGTPGAER 291

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKGKLVGRSPWLQS 437
            +QV E VK ERLL LQK + +QQ+ FN + VG+ I VL  +K GK + +++G+SP++QS
Sbjct: 292 KDQVPEEVKTERLLRLQKLISKQQLEFNQSMVGKTIPVLFSDKKGKHQNQIIGKSPYMQS 351

Query: 438 VVLNSKNHNIGD-IIKVRITDVKISTLYG 465
           V ++       D I+ V++ + + S+L G
Sbjct: 352 VCIDDSEDKYRDKIVNVKVLEARQSSLLG 380


>gi|262376194|ref|ZP_06069424.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Acinetobacter lwoffii
           SH145]
 gi|262308795|gb|EEY89928.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Acinetobacter lwoffii
           SH145]
          Length = 447

 Score =  368 bits (945), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 125/463 (26%), Positives = 213/463 (46%), Gaps = 37/463 (7%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           +   +    S GC   + DS R+     ++GY+  +  D ADL+V+NTC   E A ++  
Sbjct: 1   MKSPKVGFVSLGCPKALVDSERILTQLKTEGYDVASDYDGADLVVVNTCGFIESAVQESL 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             +G   +          +  V+V GC+   + ++I +  P V  V G   Y  + + + 
Sbjct: 61  DAIGEAMSA---------NGRVIVTGCLG-KDEDKIRQMHPNVLKVTGAAAYKEVMDAVH 110

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           +          +    + F  L + + G        A+L I EGC+  CTFC++P  RG 
Sbjct: 111 QY-------VPEPPKHNPFIDL-VPEQGIRLTPKHYAYLKISEGCNHRCTFCIIPSMRGD 162

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYS 253
            +SR +  V++EA  L   GV E+ ++ Q+ +A+      +    +G+  K  F D+  +
Sbjct: 163 LVSRPVGSVLEEAAALKRAGVKEVLVISQDTSAYGLDTKYKLDFWNGQPVKTKFYDMCEA 222

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
           L ++   VRL Y   +P   +   + A G    ++PYL +P Q  S +ILK M R   + 
Sbjct: 223 LGQLGIWVRLHYVYPYPHVDAVIDLMAQG---KILPYLDIPFQHASPKILKLMKRPAHSE 279

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
              + +   R   PD+ + S F+VGFPGET++DF+  +D + +    +   F YSP  G 
Sbjct: 280 NTLERLKIWREKCPDLVLRSTFVVGFPGETEEDFQMLLDWLKEAQLDRVGCFTYSPVEGA 339

Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS- 432
             +++ + V E +K ER     +  +E   +     +GQI+ VL++    E    V RS 
Sbjct: 340 TANDLPDHVPEEIKQERYERFMQVQQEISAAKLQKRIGQIMTVLVDDLEDEFPVAVARSY 399

Query: 433 ---PWLQSVVLNSKNH----NIGDIIKVRITDVKISTLYGELV 468
              P +   V            GD+++V ITD     LY +L+
Sbjct: 400 ADAPEIDGNVFVEDIDKSVIKAGDLLEVEITDADEYDLYAKLI 442


>gi|260554742|ref|ZP_05826963.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Acinetobacter baumannii
           ATCC 19606]
 gi|260411284|gb|EEX04581.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Acinetobacter baumannii
           ATCC 19606]
          Length = 447

 Score =  368 bits (945), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 123/459 (26%), Positives = 207/459 (45%), Gaps = 37/459 (8%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC   + DS R+     ++GY+  +  D ADL+V+NTC   E A ++    +G
Sbjct: 5   KVGFVSLGCPKALVDSERILTQLKTEGYQVASDYDGADLVVVNTCGFIESAVQESLDAIG 64

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                         +  V+V GC+   + ++I +  P V  V G   Y  + E +     
Sbjct: 65  EA---------MSENGRVIVTGCLG-KDEDKIRQMHPNVLKVTGAAAYQDVMEAVHEY-- 112

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                      +       + + G        A+L I EGC+  CTFC++P  RG  +SR
Sbjct: 113 ------VPAPPKHNPFIDLVPEQGIRLTPKHYAYLKISEGCNHRCTFCIIPSMRGDLVSR 166

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYSLSEI 257
            +  V++EA  L   GV EI ++ Q+ +A+      +    +G+  K  F D+  +L ++
Sbjct: 167 PVGSVLEEAAALKRAGVKEILVISQDTSAYGVDTKYKLDFWNGQPVKTKFFDMCEALGQL 226

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
              VRL Y   +P   +   + + G    ++PYL +P Q  S R+LK M R   +    +
Sbjct: 227 GIWVRLHYVYPYPHVDAVIDLMSQG---KILPYLDIPFQHASPRVLKLMKRPAHSENTLE 283

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
            I   R   PD+ I S F+VGFPGET++DF+  +D + +    +   F YSP  G   ++
Sbjct: 284 KIKLWREKCPDLVIRSTFVVGFPGETEEDFQILLDWLVEAQLDRVGCFTYSPVEGATAND 343

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----P 433
           + + V E +K ER     +  ++   +     +GQ + VL++    E    V RS    P
Sbjct: 344 LPDHVPEEIKQERYERFMQVQQQISAAKLQKRIGQTMTVLVDSLEDEYPVAVARSYADAP 403

Query: 434 WLQSVVL----NSKNHNIGDIIKVRITDVKISTLYGELV 468
            +   V     +      GD+++V ITD     L+ +L+
Sbjct: 404 EIDGNVFVEDIDKSTIQPGDMLEVEITDADEYDLFAKLI 442


>gi|256822298|ref|YP_003146261.1| MiaB-like tRNA modifying enzyme YliG [Kangiella koreensis DSM
           16069]
 gi|256795837|gb|ACV26493.1| MiaB-like tRNA modifying enzyme YliG [Kangiella koreensis DSM
           16069]
          Length = 455

 Score =  368 bits (945), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 127/456 (27%), Positives = 205/456 (44%), Gaps = 35/456 (7%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC   + DS R+     ++GY+ V + +DAD++V+NTC   + A ++    +G
Sbjct: 19  KVGFISLGCPKALVDSERILTQLRTEGYDIVPTYEDADIVVVNTCGFIDAAKQESLEAIG 78

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                         +  V+V GC+   E + I    P V  V GP  Y ++   +     
Sbjct: 79  EA---------LNENGKVIVTGCLGAQEND-IREIHPGVLSVSGPAQYEQVLTAVHEHLP 128

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            K       S  D F  L    G     R   A+L I EGC+  C+FC++P  RG  +SR
Sbjct: 129 PK-------SEHDPFVDLVPPQGIKLTPRHY-AYLKISEGCNHKCSFCIIPSMRGKLVSR 180

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWR------GKGLDGE--KCTFSDLLYSLSEI 257
            + QV+DEA +L+  G  E+ ++ Q+ +A+            G+  K    D+  +L ++
Sbjct: 181 PVGQVLDEAERLVKAGTKELLVVSQDTSAYGVDKKYAMDFWQGQPVKTRMKDMCEALGQL 240

Query: 258 KG-LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           +   VRL Y   +P       + A G    ++PYL +P Q  S RILK M R        
Sbjct: 241 ENVWVRLHYVYPYPHVDDIIPLMAEG---KILPYLDIPFQHASPRILKLMKRPGDINNVL 297

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
           + I + R + PDI I S FIVGFPGET+++F+  +D ++     +   FKYSP  G   +
Sbjct: 298 ERIQKWRDICPDITIRSTFIVGFPGETEEEFQELLDFLEVAQLDRVGCFKYSPVEGASAN 357

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE--KGKLVGRSPW 434
            +   V E VK ERL                  VG+I+ VL+++  ++    +    +P 
Sbjct: 358 ELPAPVPEKVKEERLARFMAVQEAISAKKLQQKVGKIMTVLVDELYEDCALARSSADAPE 417

Query: 435 LQSVVLNS---KNHNIGDIIKVRITDVKISTLYGEL 467
           +   V+     +N   G  ++V I       L+  +
Sbjct: 418 IDGKVIIDEGFENLKEGQFVEVTIEAADQHDLFASV 453


>gi|148270069|ref|YP_001244529.1| MiaB-like tRNA modifying enzyme YliG [Thermotoga petrophila RKU-1]
 gi|238064961|sp|A5IL80|RIMO_THEP1 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|147735613|gb|ABQ46953.1| MiaB-like tRNA modifying enzyme YliG [Thermotoga petrophila RKU-1]
          Length = 430

 Score =  368 bits (945), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 132/447 (29%), Positives = 212/447 (47%), Gaps = 22/447 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R  +K  GC  N  D   +  +    G+E V  + DAD++VL+TC   E A  +    + 
Sbjct: 2   RVGIKVLGCPKNEADCEVLAGVLREGGHEIVFDVKDADVVVLDTCAFIEDAKRESIDEIF 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
              + K+          +VV GC+ Q   EE+ +  P V+  +G      +   +E    
Sbjct: 62  SFVDAKDQY-----GYKLVVKGCLVQRYYEELKKEVPEVDQWIGVADPEEIANAIE---- 112

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                +    V D+ E +       + +    A++ I +GCD+ CTFC +P  +G   SR
Sbjct: 113 -----NGTDLVPDQPETVYRYRKRIDLEERPYAYVKISDGCDRGCTFCSIPSFKGSLRSR 167

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           S+  +  E   L+  G  EI L+ Q+  +  G  L   K    DLL  L+ + G   +R 
Sbjct: 168 SIEDITREVEDLLKEGKKEIILVAQDTTS-YGIDLY-RKQALPDLLRRLNSLNGEFWIRV 225

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
              HP  +++ +I A  +LD ++ Y  +PVQ GSD+ILK M R  ++ E ++++  IR  
Sbjct: 226 MYLHPDHLTEEIISAMLELDKVVKYFDVPVQHGSDKILKLMGRTKSSEELKKMLSSIRER 285

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            PD  + +  IVGFPGET++DF      V++I + +  +F YS   GT   N+ E+VD  
Sbjct: 286 FPDAVLRTSIIVGFPGETEEDFEELKQFVEEIQFDKLGAFVYSDEEGTVAFNLKEKVDPE 345

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVLN 441
           +   R   L     E   S  D  VG+ ++ L+E  GKE   LVGR+    P +  VV  
Sbjct: 346 MAKRRQEELLLLQAEISNSRLDRFVGKKLKFLVE--GKEGKFLVGRTWTEAPEVDGVVFV 403

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                IGD ++V I +     ++G ++
Sbjct: 404 RGKGKIGDFLEVVIKEHDEYDMWGSVI 430


>gi|253682144|ref|ZP_04862941.1| conserved hypothetical protein [Clostridium botulinum D str. 1873]
 gi|253561856|gb|EES91308.1| conserved hypothetical protein [Clostridium botulinum D str. 1873]
          Length = 433

 Score =  368 bits (945), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 131/446 (29%), Positives = 235/446 (52%), Gaps = 17/446 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    + GC++NVY+S  M + F   GYE V   + AD+ V+NTC +   + +K    + 
Sbjct: 2   KVAFATLGCRVNVYESEAMAEKFLKSGYEVVQFDEVADVYVINTCTVTNMSDKKSRQMIS 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R +       ++  + ++   GC  Q   +++ +    V+V++G +    +   + RA+ 
Sbjct: 62  RAK-------RKNPESIIAAVGCYTQIAPDKV-KEIGDVDVILGTRNKGDIVYWVNRAKE 113

Query: 146 GKRVVDT--DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             + +    D     KFE L+I +     +    AFL IQ+GC+ FC++C++P+ RG   
Sbjct: 114 EDKTIVEVNDVLKNKKFEELNIEEY----QDKTRAFLKIQDGCNNFCSYCLIPFARGAVC 169

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           S+    ++DE +KL ++G  EI L G ++ A  G  L+G+      +L ++ EI+G+ R+
Sbjct: 170 SKDPEIIIDEVKKLSEHGFKEIILSGIDI-ASYGVDLEGD-WNLLRVLKAIDEIEGINRV 227

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R  +  P   ++ +IK  G L  L P+ HL +QSG +  LK MNR++T  E++ I+  +R
Sbjct: 228 RIGSIGPEFFNEDIIKEIGSLKKLCPHFHLSLQSGCNSTLKRMNRKYTTEEFKNIVVLLR 287

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
               DI+I++D IVGFPGET ++F  T + + +I  ++   FKYSPR GT    M  QVD
Sbjct: 288 KYVKDISITTDIIVGFPGETKEEFEETYNYLKEIKLSKMHIFKYSPRTGTRAEKMENQVD 347

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKH-GKEKGKLVGRSPWLQSVVLNS 442
             +K ER   L K   + +  F +  + + +++L E+    ++    G +P    V+  S
Sbjct: 348 GKIKEERSKVLLKLNEKNEKEFMNKFIDKDMKILYEQKCSDKEEYYEGYTPNYIKVIAKS 407

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
           K+   G I+  ++ + +     G+++
Sbjct: 408 KDDISGKILNTKLMETREEYTIGKII 433


>gi|290968565|ref|ZP_06560103.1| MiaB-like protein [Megasphaera genomosp. type_1 str. 28L]
 gi|290781218|gb|EFD93808.1| MiaB-like protein [Megasphaera genomosp. type_1 str. 28L]
          Length = 440

 Score =  368 bits (945), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 132/439 (30%), Positives = 227/439 (51%), Gaps = 22/439 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
                + GC++N YD+  M  +F + G+      + AD+ V+NTC + +   +K    + 
Sbjct: 3   TIAFATLGCRVNQYDTDSMRGLFAAAGFRTALFTETADVYVINTCSVTQMGEKKSRQLIR 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE---R 142
           R +       K+    +VVV GC AQ   + +L     V+ VVG     ++  +++   +
Sbjct: 63  RAK-------KQNPHSVVVVTGCYAQLSPD-VLAAMEGVDAVVGTNEKKKIVTIVQTLLQ 114

Query: 143 ARFGK--RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           A  G     +       D+FE + +        R   A L IQEGC+ FCT+C++PYTRG
Sbjct: 115 APSGHALTAIHDIRHSPDEFEEIPLYPAAVTHTR---ADLKIQEGCNNFCTYCIIPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
              SR    +V+EA++L++ G  E+ L G ++ A  GK L  EK T + +L  L E   +
Sbjct: 172 KLKSRRPDAIVEEAKRLVEAGFKELVLTGIHLGA-YGKEL-AEKPTLAHILRRLVEETDV 229

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLD-VLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           +RLR  +    ++ D LI+   + +  + P+LH+P+Q+GSD ILK+MNR++T  EY  ++
Sbjct: 230 LRLRLGSIDSLEVDDDLIRIINEAEQRICPHLHIPIQAGSDTILKAMNRQYTKQEYIGLL 289

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
             ++   P+I  S+D I+GFPGET+  F  TM+ + ++ Y+   +F +SPR GTP + M 
Sbjct: 290 THLQQHIPNITFSTDLILGFPGETEALFEETMETLRQLPYSHIHAFPFSPRQGTPAATMA 349

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSV- 438
            QV    +  R+  +      Q+     + +G+ + VLIE+   + G   G     + V 
Sbjct: 350 GQVSPVERKRRVEAVNALSAAQKQQVQQSFLGKTVHVLIEQV--QAGLASGFCENYERVS 407

Query: 439 VLNSKNHNIGDIIKVRITD 457
           +  +    +GD++ V++  
Sbjct: 408 IQEAPAIKVGDMVAVKVIG 426


>gi|91783479|ref|YP_558685.1| hypothetical protein Bxe_A2337 [Burkholderia xenovorans LB400]
 gi|123168508|sp|Q13Z56|RIMO_BURXL RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|91687433|gb|ABE30633.1| SSU ribosomal protein S12P methylthiotransferase [Burkholderia
           xenovorans LB400]
          Length = 461

 Score =  368 bits (945), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 125/482 (25%), Positives = 210/482 (43%), Gaps = 48/482 (9%)

Query: 13  MVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHI 72
           M +      I   +    S GC   + DS ++     ++GYE   + D ADL+V+NTC  
Sbjct: 1   MSATPPIAPIATPKVGFVSLGCPKALVDSEQIITQLRAEGYEISGTYDGADLVVVNTCGF 60

Query: 73  REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEE----ILRRSPIVNVVV 128
            ++A ++    +G              +  V+V GC+   +       I    P V  V 
Sbjct: 61  IDEAVQESLDAIGEA---------LNENGKVIVTGCLGAKKSASGSGLIEEVHPKVLAVT 111

Query: 129 GPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
           GP     + + +                 D F  L     G        A+L I EGC+ 
Sbjct: 112 GPHALGEVMQHVHMHLP---------KPHDPFVDLVPA-AGVKLTPRHYAYLKISEGCNH 161

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDG 242
            CTFC++P  RG  +SR ++ V+ EA  L  +GV E+ ++ Q+ +A+      R    +G
Sbjct: 162 RCTFCIIPSMRGDLVSRPVADVMLEAENLFKSGVKELLVISQDTSAYGVDVKYRTGFWNG 221

Query: 243 E--KCTFSDLLYSLSEI----KGLVRLRYTTSHPRDMSDCLIKAHGDLD-VLMPYLHLPV 295
           +  K   +DL+ +L E+       VRL Y   +P       + A G     ++PYL +P 
Sbjct: 222 KPIKTRMTDLVGALGELAAQYGAWVRLHYVYPYPSVDEVIPMMAEGPFKGHVLPYLDVPF 281

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
           Q     +LK M R   A +  + + + R + PD+ I S FI GFPGET++ F+  +D + 
Sbjct: 282 QHAHPEVLKRMKRPANAEKVMERVKKWREMCPDLTIRSTFIAGFPGETEEQFQTLLDFIR 341

Query: 356 KIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIE 415
           +    +   F YSP  G   + +   + + V+ ER     +   E         VG+ ++
Sbjct: 342 EAELDRVGCFAYSPVEGATANELDGALPDEVREERRARFMEVAEEVSAKRIAKKVGKTLK 401

Query: 416 VLIEKHGKEKGKLVGRS----PWLQSVVLNS------KNHNIGDIIKVRITDVKISTLYG 465
           VL+++   + G  +GR+    P +  VV  +      K + +GD + V+IT      L+G
Sbjct: 402 VLVDEINADGG--IGRTAADAPEIDGVVYIAPAVKASKRYKVGDFVSVKITGADGHDLWG 459

Query: 466 EL 467
           E+
Sbjct: 460 EV 461


>gi|294625097|ref|ZP_06703743.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292600606|gb|EFF44697.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
          Length = 457

 Score =  368 bits (944), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 130/458 (28%), Positives = 211/458 (46%), Gaps = 39/458 (8%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC   + DS R+      +GY+ V S D AD++V+NTC   + A  +    +G
Sbjct: 7   KVGFVSLGCPKALVDSERILTQLRVEGYDIVPSYDAADVVVVNTCGFIDSAVTESLDAIG 66

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                         +  V+V GC+ +   E+I    P V  V GPQ Y  + E +  A  
Sbjct: 67  EA---------MNANGKVIVTGCLGKR-PEQIREAYPQVLAVSGPQDYQSVMEAVHAALP 116

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            +          D F  L + D G        A+L I EGC+  C+FC++P  RG  +SR
Sbjct: 117 PR---------HDPFVDL-VPDYGIKLTPRHYAYLKISEGCNHRCSFCIIPSMRGDLVSR 166

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSD---------LLYSLSE 256
            + +V+ EA +L+  GV E+ ++ Q+ +A  G  L   +  + D         L   LSE
Sbjct: 167 PVDEVLREAERLVRGGVKELLVVSQDTSA-YGVDLKYAERPWRDRLYQTRMKALCEGLSE 225

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           +    RL Y   +P       + A G    L+PYL +P Q  S RILK M R     +  
Sbjct: 226 LGVWTRLHYVYPYPHVDDVIPLMAEG---RLLPYLDIPFQHASPRILKLMKRPGAVEKTL 282

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
           + + R +++ P+I + S FIVGFPGETD +F + +D +D+    +  +F YSP  G   +
Sbjct: 283 ERMQRWKAMCPEITVRSTFIVGFPGETDAEFESLLDFLDQAQLDRVGAFAYSPVDGASAN 342

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE--KHGKEKGKLVGRSPW 434
            + + V E VK ERL     K  +      ++ +G + + L++  +      +    +P 
Sbjct: 343 ALPDPVPEEVKQERLARFMAKQAQISALRLESKIGSVQQCLVDVIEDDIAVARSRADAPE 402

Query: 435 LQS-VVLNSKNHN---IGDIIKVRITDVKISTLYGELV 468
           +   V + +       +GD++ V ITD     L+G+ +
Sbjct: 403 IDGLVHIQNGGELGLKVGDLVDVEITDSDEHDLFGDAL 440


>gi|74317782|ref|YP_315522.1| hypothetical protein Tbd_1764 [Thiobacillus denitrificans ATCC
           25259]
 gi|123731779|sp|Q3SI16|RIMO_THIDA RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|74057277|gb|AAZ97717.1| conserved hypothetical protein [Thiobacillus denitrificans ATCC
           25259]
          Length = 443

 Score =  368 bits (944), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 132/461 (28%), Positives = 203/461 (44%), Gaps = 35/461 (7%)

Query: 20  QCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEK 79
           +          S GC     DS R+     ++GY  V S DDAD++V+NTC   + A ++
Sbjct: 6   KTARTPTVGFVSLGCPKATVDSERILTQLRAEGYGIVGSYDDADVVVVNTCGFIDAAVQE 65

Query: 80  VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL 139
               +G              +  V+V GC+  A+GE I    P V  V GP     + E 
Sbjct: 66  SLEAIGEA---------IAENGKVIVTGCLG-AKGELIREVHPKVLAVSGPHALDEVMEA 115

Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           +  A              D F  L I  GG        A+L I EGC+  C+FC++P  R
Sbjct: 116 VHGALP---------KPHDPFADL-IPPGGIKLTPRHYAYLKISEGCNHRCSFCIIPSMR 165

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-----RGKGLDGE---KCTFSDLL 251
           G  +SR + +V+ EA  L+  GV E+ ++ Q+ +A+        G  G    K   ++L 
Sbjct: 166 GDLVSRPIGEVMHEAEALVSAGVQELLVVSQDTSAYGVDVKYRPGFWGGRPVKTRMTELA 225

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
            +L  +   VRL Y   +P       + A G   V++PYL +P Q  S RILK M R   
Sbjct: 226 RALGSLGAWVRLHYVYPYPSVDDVIPLMADG---VILPYLDIPFQHASPRILKLMKRPGA 282

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
             +    I   R+  P++ + S FIVGFPGETD +F   +D +      +   FKYSP  
Sbjct: 283 VEKTLDRIHAWRAAVPELTLRSTFIVGFPGETDPEFEELLDFLKHAQLDRVGCFKYSPIE 342

Query: 372 GTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLV 429
           G   + + + V E +K ERL    +   E   +  DA +G+ IEVL+++  +     +  
Sbjct: 343 GAVANELPDPVPEELKDERLERFMETQAEISAARLDAKIGRTIEVLVDEEDEVGTLARSH 402

Query: 430 GRSPWLQSVVLNSK--NHNIGDIIKVRITDVKISTLYGELV 468
             +P +  VV          G  + V++ +     L+   V
Sbjct: 403 ADAPEIDGVVYLEGVFGLKPGTRLTVKVDEADAHDLWATPV 443


>gi|120600362|ref|YP_964936.1| ribosomal protein S12 methylthiotransferase [Shewanella sp.
           W3-18-1]
 gi|238066618|sp|A1RNY7|RIMO_SHESW RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|120560455|gb|ABM26382.1| MiaB-like tRNA modifying enzyme YliG [Shewanella sp. W3-18-1]
          Length = 472

 Score =  368 bits (944), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 133/467 (28%), Positives = 210/467 (44%), Gaps = 36/467 (7%)

Query: 15  SQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIRE 74
           +   +      R    S GC  N+ DS R+       GYE  NS D+ADL+++NTC   +
Sbjct: 23  AASTNAVTTGNRIGFVSLGCPKNLVDSERILTQLRIDGYEVTNSYDNADLVIVNTCGFID 82

Query: 75  KAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYY 134
            A E+    +                  V+V GC+  A+  +I    P V  + GP +Y 
Sbjct: 83  AAVEESLDAVREALEENGK---------VIVTGCLG-AKENQIREVHPDVLEITGPHSYE 132

Query: 135 RLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCV 194
            + + + +               + F  L I   G        A+L I EGCD  CTFC+
Sbjct: 133 AVLKHVHKY--------VPKPEHNPFTSL-IPQTGVKLTPKHYAYLKISEGCDNRCTFCI 183

Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE---------KC 245
           +P  RG   SR    ++DEA++L+++GV EI ++ Q+ +A  GK   G          K 
Sbjct: 184 IPSLRGDLDSRPAGSILDEAKRLVESGVQEILVVSQDTSA-YGKDKGGRTDFWDGMPVKQ 242

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
             + L   L ++   VRL Y   +P       + A G   +++PYL +P+Q  S RILK 
Sbjct: 243 DITSLARQLGKMGAWVRLHYIYPYPWVDDLIPLMAEG---LILPYLDIPMQHASPRILKM 299

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           M R        + I R R + PD+ I S FIVGFPGET++DF+  +D + +    +   F
Sbjct: 300 MKRPGRVDRQLEAIQRWREICPDLVIRSTFIVGFPGETEEDFQILLDFLKEARLDRVGCF 359

Query: 366 KYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK 425
           KYS   G   + + E + E VK +R     +   E         VG+ +++LI+   +E 
Sbjct: 360 KYSEVDGAVANTIAELISEEVKEDRYHRFMELQAEISAERLARFVGRTLDILIDDVDEEG 419

Query: 426 --GKLVGRSPWLQSVVLNSK--NHNIGDIIKVRITDVKISTLYGELV 468
             G+    +P +  +V  +       G +++ RIT      L+ E+V
Sbjct: 420 AIGRSFADAPEIDGMVFINGETELEPGMLVRARITHSDEHDLWAEVV 466


>gi|296121002|ref|YP_003628780.1| MiaB-like tRNA modifying enzyme YliG [Planctomyces limnophilus DSM
           3776]
 gi|296013342|gb|ADG66581.1| MiaB-like tRNA modifying enzyme YliG [Planctomyces limnophilus DSM
           3776]
          Length = 463

 Score =  368 bits (944), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 126/448 (28%), Positives = 220/448 (49%), Gaps = 14/448 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
            +   S GC  N+ DS RM      +GY  V + + AD +V+NTC   + A E+  S + 
Sbjct: 15  TYAFVSLGCPKNLVDSERMLGTLSEEGYSLVPNPEGADFVVINTCGFIDSAREESKSVIR 74

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +  LK+     GG   V+VAGC+ +  G  +L+  P ++ V+G  +   + ++ +R   
Sbjct: 75  EMLQLKS----HGGTRGVIVAGCLPERMGGALLQEIPEIDHVMGVFSREEIGKVADRMVG 130

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G R     +           +      K    A+L I EGCD+ CTFC +P  RG  I++
Sbjct: 131 GAREQREVFRPAPIRAMDDRLRLRVTPK--HFAYLKISEGCDRTCTFCAIPKMRGKHITK 188

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            +  V+ EAR+L  +GV E+ L+ Q+   + G  L G +   ++LL  + +++G+  +R 
Sbjct: 189 PIEMVIQEARELAADGVKELILVAQDTT-YYGLDLYG-RVRLAELLREVEKVEGIQWIRL 246

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
              +P   +D LI        ++PYL LP+Q  +D +L+ M RR       +++D+++  
Sbjct: 247 MYLYPIHFTDELIDTIAGSGKILPYLDLPLQHINDTMLRRMQRRTNRAATVELLDKLQDR 306

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
             ++ I + FI GFPGETD  F      VD+  +A+  +F YS   GTP   + + + E+
Sbjct: 307 IANLTIRTTFITGFPGETDAQFEELCQFVDEGRFARLGAFTYSYEPGTPAVRLPDHLPED 366

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQS-VVL 440
           VKA R   L +  +    +F D  +G  ++ ++++   ++   +GR    +P + + V +
Sbjct: 367 VKAARRDRLMEIQQPHAFAFADQWIGYELDAVLDRK-IDEQTWLGRCFFDAPDIDANVFV 425

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
             +N   G +I V IT      L    +
Sbjct: 426 TGENLRAGQMIPVEITARDGYDLRAVAI 453


>gi|148255523|ref|YP_001240108.1| ribosomal protein S12 methylthiotransferase [Bradyrhizobium sp.
           BTAi1]
 gi|238065295|sp|A5EJ58|RIMO_BRASB RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|146407696|gb|ABQ36202.1| SSU ribosomal protein S12P methylthiotransferase [Bradyrhizobium
           sp. BTAi1]
          Length = 441

 Score =  368 bits (944), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 135/463 (29%), Positives = 209/463 (45%), Gaps = 38/463 (8%)

Query: 18  VDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA 77
           + Q   P+  FV S GC   + DS R+     ++GYE     D AD++++NTC   + A 
Sbjct: 1   MQQGSAPKISFV-SLGCPKALVDSERIITRLRAEGYELARKHDGADVVIVNTCGFLDSAK 59

Query: 78  EKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLP 137
           ++  S +G              +  V+V GC+  AE E+I +  P V  + GPQ Y  + 
Sbjct: 60  QESLSAIGSA---------MAENGKVIVTGCMG-AEPEQIEQAYPGVLSITGPQQYESVL 109

Query: 138 ELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197
           E + RA                     +   G        A+L I EGC+  CTFC++P 
Sbjct: 110 EAVHRA----------SPPIHNPHLDLVPPQGIKLTPRHYAYLKISEGCNNRCTFCIIPK 159

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE---------KCTFS 248
            RG  +SR  + V+ EA +L+  GV E+ ++ Q+ +A  G  L            +  F 
Sbjct: 160 LRGDLVSRPAADVLREAERLVAAGVKELLVISQDTSA-YGLDLKYAESSWKDRSVRARFL 218

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
           DL   L E+   VRL Y   +P       + A G    ++PYL +P Q  S  +LK+M R
Sbjct: 219 DLARELGELGAWVRLHYVYPYPHVDEVVGLMAEG---RVLPYLDIPFQHASPNVLKAMRR 275

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
                +    I   R+  PD+A+ S FIVGFPGETD DF   +D +D+    +   FKY 
Sbjct: 276 PAAQDKTLDRIKSWRAACPDLALRSTFIVGFPGETDADFAYLLDWLDEAEIDRLGCFKYE 335

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK--EKG 426
           P  G   + + +QV + VK ER   L  + ++         VG   +++I++ G    KG
Sbjct: 336 PVAGATSNALPDQVPDEVKQERWNALMARQQKISARRLKRKVGTRQQIIIDEVGPTVAKG 395

Query: 427 KLVGRSPWLQSVVLNSK--NHNIGDIIKVRITDVKISTLYGEL 467
           +    +P +   V  S      +G+I+  RI       L+G +
Sbjct: 396 RSKADAPEIDGSVYVSSRRPLRVGEIVTARIERADEYDLHGTV 438


>gi|110637073|ref|YP_677280.1| 2-methylthioadenine synthetase [Cytophaga hutchinsonii ATCC 33406]
 gi|123354783|sp|Q11XC6|RIMO_CYTH3 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|110279754|gb|ABG57940.1| SSU ribosomal protein S12P methylthiotransferase [Cytophaga
           hutchinsonii ATCC 33406]
          Length = 437

 Score =  368 bits (944), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 118/452 (26%), Positives = 209/452 (46%), Gaps = 34/452 (7%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSM--DDADLIVLNTCHIREKAAEKVYSF 83
           +  + + GC  N+ DS  +       G E  +    D+++++V+NTC   + A ++    
Sbjct: 10  KVNIVTLGCSKNLVDSENLLTQLRGNGIEAEHESKNDNSNVVVINTCGFIDNAKQESIDT 69

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           + R  + K +    G    + V+GC++Q   +++ R  P V+   G       P +L++ 
Sbjct: 70  ILRYIDAKEN----GLIDKIYVSGCLSQRYKDDMEREMPQVDAFFGSNEL---PAILKKF 122

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           R        DY  E   ERL      Y       A++ I EGCD+ C+FC +P  RG  +
Sbjct: 123 R-------ADYKHELVGERLLTTPSHY-------AYVKIAEGCDRPCSFCAIPVMRGKHV 168

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           S  +  +V +A+ +   G  E+ L+ Q++  + G  +  +K   SDLL +LS+++G+  +
Sbjct: 169 STPMEDLVKQAKGMAAKGTKELILIAQDLT-YYGLDIY-KKRNLSDLLKNLSDVEGIDWI 226

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R   ++P      ++    +   +  Y+ +P+Q GS  +LK M R     +   +I  IR
Sbjct: 227 RLQYAYPSGFPLDVLDVMAERSNICKYIDMPLQHGSSDMLKLMRRGIDRPKTEDLIKTIR 286

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              P IA  +  I+G PGET+ DF      V++  + +  +F YS    T   +M + + 
Sbjct: 287 DKVPGIAFRTTMIIGHPGETEKDFDELCSFVEEQRFDRLGAFTYSHEEHTHSYSMEDTIP 346

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVV 439
           +  K ER   +           N+  +G   +VL ++  KE G  +GR+    P + + V
Sbjct: 347 QEEKEERQATIMSIQEGISAELNEKKIGNTYKVLFDR--KEGGYFIGRTEHDSPEVDNEV 404

Query: 440 LNSKNH---NIGDIIKVRITDVKISTLYGELV 468
           + S       IGD   V+I D     L+GE+V
Sbjct: 405 MVSAKDQYVRIGDFANVKINDAAEFDLFGEIV 436


>gi|255320445|ref|ZP_05361626.1| conserved hypothetical protein [Acinetobacter radioresistens SK82]
 gi|262378341|ref|ZP_06071498.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Acinetobacter
           radioresistens SH164]
 gi|255302417|gb|EET81653.1| conserved hypothetical protein [Acinetobacter radioresistens SK82]
 gi|262299626|gb|EEY87538.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Acinetobacter
           radioresistens SH164]
          Length = 447

 Score =  368 bits (944), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 124/463 (26%), Positives = 209/463 (45%), Gaps = 37/463 (7%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           +   +    S GC   + DS R+     ++GY+  +  D ADL+V+NTC   E A ++  
Sbjct: 1   MKSPKVGFVSLGCPKALVDSERILTQLKTEGYQVASDYDGADLVVVNTCGFIESAVQESL 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             +G              +  V+V GC+   + ++I +  P V  V G   Y  +   + 
Sbjct: 61  DAIGEA---------MSENGRVIVTGCLG-KDEDKIRQMHPNVLKVTGAAAYEDVMSAVH 110

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           +              +       + + G        A+L I EGC+  CTFC++P  RG 
Sbjct: 111 QY--------VPAPPKHNPFIDLVPEQGVRLTPKHYAYLKISEGCNHRCTFCIIPSMRGD 162

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYS 253
            +SR +  V++EA  L   GV EI ++ Q+ +A+      +    +G+  K  F D+  +
Sbjct: 163 LVSRPVGSVLEEAAALKRAGVREILVISQDTSAYGVDTKYKLDFWNGQPVKTKFFDMCEA 222

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
           L ++   VRL Y   +P   +   + A G    ++PYL +P Q  S RILK M R   + 
Sbjct: 223 LGQLGIWVRLHYVYPYPHVDAVIDLMAQG---KILPYLDIPFQHASPRILKLMKRPAHSE 279

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
              + +   R   PD+ I S F+VGFPGET++DF+  ++ + +    +   F YSP  G 
Sbjct: 280 NTLERLKVWREKCPDLVIRSTFVVGFPGETEEDFQILLEWLKEAQLDRVGCFTYSPVEGA 339

Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS- 432
             +++ + V E VK ER     +  +E   +     +GQ + VL++   +E    V RS 
Sbjct: 340 TANDLPDHVPEEVKQERYERFMQVQQEISAAKLQKRIGQTMTVLVDNLEEEFPVAVARSY 399

Query: 433 ---PWLQSVVL----NSKNHNIGDIIKVRITDVKISTLYGELV 468
              P +   V     +      GD+++V ITD     L+ +L+
Sbjct: 400 ADAPEIDGNVFVEDIDKSQIKSGDLLEVEITDADEYDLFAKLI 442


>gi|221198052|ref|ZP_03571098.1| conserved hypothetical protein [Burkholderia multivorans CGD2M]
 gi|221204390|ref|ZP_03577407.1| conserved hypothetical protein [Burkholderia multivorans CGD2]
 gi|221175247|gb|EEE07677.1| conserved hypothetical protein [Burkholderia multivorans CGD2]
 gi|221181984|gb|EEE14385.1| conserved hypothetical protein [Burkholderia multivorans CGD2M]
          Length = 453

 Score =  368 bits (944), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 126/469 (26%), Positives = 208/469 (44%), Gaps = 48/469 (10%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC   + DS ++     ++GYE   + D ADL+V+NTC   ++A ++    +G
Sbjct: 6   KVGFVSLGCPKALVDSEQIITQLRAEGYEISGTYDGADLVVVNTCGFIDEAVQESLDAIG 65

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEE----ILRRSPIVNVVVGPQTYYRLPELLE 141
                            V+V GC+   +       I    P V  V GP     + + + 
Sbjct: 66  EALTENGK---------VIVTGCLGAKKSASGSGLIEEVHPKVLAVTGPHAVGEVMQAVH 116

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
                           D F  L +   G        A+L I EGC+  CTFC++P  RG 
Sbjct: 117 SHLP---------KPHDPFVDL-VPPAGIKLTPRHYAYLKISEGCNHRCTFCIIPSMRGD 166

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYS 253
            +SR +++V+ EA  L  +GV E+ ++ Q+ +A+      R    +G+  K   +DL+ +
Sbjct: 167 LVSRPVAEVMLEAENLFKSGVKELLVISQDTSAYGVDVKYRTGFWNGKPIKTRMTDLVAA 226

Query: 254 LSEI----KGLVRLRYTTSHPRDMSDCLIKAHGDLD-VLMPYLHLPVQSGSDRILKSMNR 308
           L E+       VRL Y   +P       + A G     ++PYL +P Q     +LK M R
Sbjct: 227 LGELAAQYGAWVRLHYVYPYPSVDEVIPLMAEGPFKGHVLPYLDVPFQHAHPEVLKRMKR 286

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
              A +  + + + R + PD+ I S FI GFPGET++ F   +D + +    +   F YS
Sbjct: 287 PANAEKVLERVQKWREICPDLTIRSTFIAGFPGETEEQFETLLDFIREAELDRVGCFAYS 346

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL 428
           P  G   + +   + ++V+ ER     +   E         VG+ ++VLI++   E G  
Sbjct: 347 PVEGASANELDGALPDDVREERRARFMEVAEEVSAQRIARKVGKTLKVLIDEVSDEGG-- 404

Query: 429 VGRS----PWLQSVVLN------SKNHNIGDIIKVRITDVKISTLYGEL 467
           +GR+    P +  VV        SK + +GD + V+IT      L+GE+
Sbjct: 405 IGRTAADAPEIDGVVYVEPATKASKRYKVGDFVSVKITGADGHDLWGEV 453


>gi|50084549|ref|YP_046059.1| ribosomal protein S12 methylthiotransferase [Acinetobacter sp.
           ADP1]
 gi|81393301|sp|Q6FCH4|RIMO_ACIAD RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|49530525|emb|CAG68237.1| conserved hypothetical protein [Acinetobacter sp. ADP1]
          Length = 447

 Score =  368 bits (944), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 123/463 (26%), Positives = 204/463 (44%), Gaps = 37/463 (7%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           +   +    S GC   + DS R+     ++GY+  +  D ADL+V+NTC   E A ++  
Sbjct: 1   MKSPKVGFVSLGCPKALVDSERILTQLRTEGYQVASDYDGADLVVVNTCGFIESAVQESL 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             +G              +  V+V GC+   + ++I +  P V  V G   Y  + E + 
Sbjct: 61  DAIGEA---------MSENGRVIVTGCLG-KDEDKIRQMHPNVLKVTGAAAYQDVMEAVH 110

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
                                  + + G        A+L I EGC+  CTFC++P  RG 
Sbjct: 111 EY--------VPAPPRHNPFVDLVPEQGIRLTPKHYAYLKISEGCNHRCTFCIIPSMRGD 162

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYS 253
            +SR +  V++EA  L   GV E+ ++ Q+ +A+      +    +G+  K  F D+  +
Sbjct: 163 LVSRPVGSVLEEAAALKRAGVKEVLVISQDTSAYGVDTKYKLDFWNGQPVKTKFYDMCEA 222

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
           L ++   VRL Y   +P   +   + A G    ++PYL +P Q  S RILK M R   + 
Sbjct: 223 LGQLGIWVRLHYVYPYPHVDAVIDLMAQG---KILPYLDIPFQHASPRILKLMKRPAHSE 279

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
                I   R   P++ I S F+VGFPGET++DF+  ++ + +    +   F YSP  G 
Sbjct: 280 NTLDRIKVWREKCPNLVIRSTFVVGFPGETEEDFQILLEWLKEAQLDRVGCFTYSPVEGA 339

Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS- 432
             +++ + V E VK ER     +  +E   +     +GQ + VL++    E    V RS 
Sbjct: 340 TANDLPDHVSEEVKQERYERFMQVQQEISAARLQKRIGQTMTVLVDSLEDEYPVAVARSY 399

Query: 433 ---PWLQSVVLNSKNHN----IGDIIKVRITDVKISTLYGELV 468
              P +   V            G +++V ITD     L+ +L+
Sbjct: 400 ADAPEIDGNVFVEDIDKSLVQPGQLLEVEITDADEYDLFAKLI 442


>gi|291166092|gb|EFE28138.1| 2-methylthioadenine synthetase [Filifactor alocis ATCC 35896]
          Length = 445

 Score =  368 bits (944), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 127/449 (28%), Positives = 218/449 (48%), Gaps = 17/449 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + F+ + GC  N  DS  M  +  S+G  +   +++A++ ++NTC   + A E+    + 
Sbjct: 7   KVFITTMGCAKNWVDSENMLGIMESEGLTQTLDVEEAEIGIVNTCGFIDSAKEESIQEIL 66

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +   K      G    ++V GC+AQ   +E++   P ++ ++G  ++ ++   ++    
Sbjct: 67  SLAQYKE----IGNLKKLIVTGCLAQRYSKELMEEIPEIDFILGTTSFPQIMSAIKMTEL 122

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           GKR    D  +ED    LS             A+L I EGCD  CT+C++P  RG   SR
Sbjct: 123 GKR----DSLLEDINLNLSENMERTQLTEEYYAYLKIAEGCDNLCTYCIIPKLRGKYRSR 178

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
               +V+E++KL ++GV E+ ++ Q+     G  L G+K +  +LL  L  +KGL  +R 
Sbjct: 179 QKEDIVEESKKLAESGVKELIVIAQDTT-KYGIDLYGKK-SLGELLKELDNVKGLHWIRV 236

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
             S+P D+ D  I A  +   ++PY  +P+Q  SD +LK MNR  +  E    +++IR+ 
Sbjct: 237 LYSYPEDIDDEFILAVKNSKKIIPYFDMPIQHCSDTVLKRMNRHTSKQELYDKVNQIRTQ 296

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P+  + +  I GFPGET ++F      V ++ + +   F +S   GTP + M +Q++E 
Sbjct: 297 IPNAVLRTTLITGFPGETREEFEELKQFVQEVKFDRLGVFAFSQEEGTPAAKMKDQIEEQ 356

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSP----WLQSVVL- 440
            K  R   +    +      N + + Q +EV + +   E+G  VGRS      +  VV  
Sbjct: 357 EKENRRAEIMNIQQAVSFEKNQSFLNQTVEV-LIEEEVEQGVYVGRSKRDMVEIDGVVYV 415

Query: 441 -NSKNHNIGDIIKVRITDVKISTLYGELV 468
              +   IG  + V I D     L G  V
Sbjct: 416 HTDRELEIGSFVSVEIDDFMEYDLIGRAV 444


>gi|186475738|ref|YP_001857208.1| ribosomal protein S12 methylthiotransferase [Burkholderia phymatum
           STM815]
 gi|238065310|sp|B2JG80|RIMO_BURP8 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|184192197|gb|ACC70162.1| MiaB-like tRNA modifying enzyme YliG [Burkholderia phymatum STM815]
          Length = 463

 Score =  368 bits (944), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 122/482 (25%), Positives = 206/482 (42%), Gaps = 48/482 (9%)

Query: 13  MVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHI 72
             S       +  +    S GC   + DS ++     ++GYE   + D ADL+V+NTC  
Sbjct: 3   QTSISSAPTALTPKVGFVSLGCPKALVDSEQIITQLRAEGYEISGTYDGADLVVVNTCGF 62

Query: 73  REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEE----ILRRSPIVNVVV 128
            ++A ++    +G              +  V+V GC+   +       I    P V  V 
Sbjct: 63  IDEAVQESLDAIGEA---------LNENGKVIVTGCLGAKQSASGSNLIEEVHPKVLAVT 113

Query: 129 GPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
           GP     + + +                 D F  L     G        A+L I EGC+ 
Sbjct: 114 GPHAVGEVMQAVHSHLP---------KPHDPFVDLVPA-AGVKLTPRHYAYLKISEGCNH 163

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDG 242
            CTFC++P  RG  +SR +++V+ EA  L  +GV E+ ++ Q+ +A+      R    +G
Sbjct: 164 RCTFCIIPSMRGDLVSRPVAEVMLEAENLFKSGVKELLVISQDTSAYGVDVKYRTGFWNG 223

Query: 243 E--KCTFSDLLYSLSEI----KGLVRLRYTTSHPRDMSDCLIKAHGDLD-VLMPYLHLPV 295
           +  K   +DL+ +L E+       VRL Y   +P       + A G     ++PYL +P 
Sbjct: 224 KPIKTRMTDLVGALGELAAQYGAWVRLHYVYPYPSVDEVIPMMAEGSFKGHVLPYLDVPF 283

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
           Q     +LK M R   A +  + +   R + PD+ I S FI GFPGET + F   +D + 
Sbjct: 284 QHAHPEVLKRMKRPANAEKVLERVRAWREICPDLTIRSTFIAGFPGETQEQFETLLDFIR 343

Query: 356 KIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIE 415
           +    +   F YSP  G   + +   + + V+  R     +   +         VG+ ++
Sbjct: 344 EAELDRVGCFAYSPVEGATANELDGALPDEVREARRARFMEVAEQVSAKRMARKVGKTLK 403

Query: 416 VLIEKHGKEKGKLVGRS----PWLQSVVLNS------KNHNIGDIIKVRITDVKISTLYG 465
           VL+++   + G  +GR+    P +  VV  +      K + +GD + V+IT      L+G
Sbjct: 404 VLVDEINPDGG--IGRTAADAPEIDGVVYIAPATKASKRYKVGDFVSVKITGADGHDLWG 461

Query: 466 EL 467
           E+
Sbjct: 462 EV 463


>gi|313201433|ref|YP_004040091.1| miab-like tRNA modifying enzyme ylig [Methylovorus sp. MP688]
 gi|312440749|gb|ADQ84855.1| MiaB-like tRNA modifying enzyme YliG [Methylovorus sp. MP688]
          Length = 441

 Score =  368 bits (944), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 123/460 (26%), Positives = 209/460 (45%), Gaps = 37/460 (8%)

Query: 18  VDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA 77
           ++Q I   +    S GC     DS R+     ++GY    S  D+DL+V+NTC   + A 
Sbjct: 1   MNQSIP--KVGFVSLGCPKASSDSERILTQLRAEGYSISGSYQDSDLVVVNTCGFIDSAV 58

Query: 78  EKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLP 137
           ++    +G                 V+V GC+  A+ + +    P V  V GP     + 
Sbjct: 59  QESLDAIGEALAENGK---------VIVTGCLG-AKADVVQNAHPSVLAVTGPHALEEVM 108

Query: 138 ELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197
             +                 D +  L +   G        A+L I EGC+  C+FC++P 
Sbjct: 109 TAVHANLP---------KPHDPYTDL-VPPQGVRLTPKHYAYLKISEGCNHRCSFCIIPS 158

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSD 249
            RG  +SR + +V+ EA  L++ GV E+ ++ Q+ +A+      R    +G   K   ++
Sbjct: 159 MRGDLVSRPIGEVMQEAENLVNAGVSELLVISQDTSAYGVDVKYRTGFWNGRPIKTRMTE 218

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
           L   L ++   VR+ Y   +P       + A G   +++PYL +P Q  S RILK+M R 
Sbjct: 219 LARGLGDLGVWVRMHYVYPYPHVDEIIPLMADG---LILPYLDVPFQHASPRILKAMKRP 275

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369
            ++      I   R + PDI I S FI GFPGET++DF+  +D + +    +   F YS 
Sbjct: 276 ASSENNLARIKAWRDICPDITIRSTFITGFPGETEEDFQMLLDFLQEAELDRVGCFAYSA 335

Query: 370 RLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GK 427
             G   + + + V E +K ERL    +             VG++  VL+++   ++   +
Sbjct: 336 VDGAAANALPDAVPEELKQERLARFMEVQEAISAEKLQRRVGRLETVLVDEVNGDEAIAR 395

Query: 428 LVGRSPWLQSVVL--NSKNHNIGDIIKVRITDVKISTLYG 465
            +  +P +  VV   +++  N GD+++V+ITD     L+G
Sbjct: 396 TMSDAPEIDGVVYLADAEGLNPGDLVEVQITDADGHDLWG 435


>gi|158422878|ref|YP_001524170.1| ribosomal protein S12 methylthiotransferase [Azorhizobium
           caulinodans ORS 571]
 gi|238065289|sp|A8I0G1|RIMO_AZOC5 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|158329767|dbj|BAF87252.1| putative 2-methylthioadenine synthetase [Azorhizobium caulinodans
           ORS 571]
          Length = 450

 Score =  368 bits (944), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 136/471 (28%), Positives = 209/471 (44%), Gaps = 37/471 (7%)

Query: 11  AHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC 70
           A   S +        R    S GC   + DS R+     ++GYE   + D ADL+++NTC
Sbjct: 2   AEPTSTLSTATPAAPRISFVSLGCPKALVDSERIVTRLRAEGYELTRNHDGADLVIVNTC 61

Query: 71  HIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGP 130
              + A  +  S +G                 VVV GC+  AE E+I    P V  + GP
Sbjct: 62  GFLDSAKAESLSAIGEALAENGK---------VVVTGCMG-AEPEQIRAVHPSVLAITGP 111

Query: 131 QTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190
           Q Y  + + + +A              D F  L + + G        A+L I EGC+  C
Sbjct: 112 QQYESVLDAVHQA---------VPPKHDPFLDL-VPEQGVKLTPRHYAYLKISEGCNNRC 161

Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW---------RGKGLD 241
           TFC++P  RG  +SR L++V+ EA KL+  GV E+ ++ Q+ +A+         R K  D
Sbjct: 162 TFCIIPKLRGDLVSRPLNEVMREAEKLVAAGVKELLVISQDTSAYGVDLKYAESRWKDRD 221

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
                F DL  +L ++   VRL Y   +P       + A      ++PYL +P Q  S  
Sbjct: 222 WA-TRFFDLADALGDLGAWVRLHYVYPYPHVDRVMELMA---SGKVLPYLDIPFQHASPT 277

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
           +L+ M R     +    +   R   PDI + S FIVGFPGET+++F+  +D +D+    +
Sbjct: 278 VLRRMKRPAAQEKTLARVLAWRDAVPDITLRSTFIVGFPGETEEEFQELLDFLDEAQLDR 337

Query: 362 AFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK- 420
              FK+ P  G P + +   V + VKAER      K +          VG   +V+I+  
Sbjct: 338 VGCFKFEPVAGAPANALENPVPDEVKAERYDRFMLKQQAISARRLKRKVGTRQQVIIDSV 397

Query: 421 -HGKEKGKLVGRSPWLQS-VVLNS-KNHNIGDIIKVRITDVKISTLYGELV 468
             G   G+  G +P +   V + S +   +G+I  V+I       L G  V
Sbjct: 398 TPGGAIGRTKGDAPEIDGSVKIASRRPLRVGEIATVKIEAADAYDLIGSAV 448


>gi|58582895|ref|YP_201911.1| ribosomal protein S12 methylthiotransferase [Xanthomonas oryzae pv.
           oryzae KACC10331]
 gi|84624755|ref|YP_452127.1| hypothetical protein XOO_3098 [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|75434617|sp|Q5GXP5|RIMO_XANOR RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|123739066|sp|Q2P0S4|RIMO_XANOM RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|58427489|gb|AAW76526.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84368695|dbj|BAE69853.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae MAFF
           311018]
          Length = 466

 Score =  368 bits (944), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 133/458 (29%), Positives = 211/458 (46%), Gaps = 39/458 (8%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC   + DS R+      +GY+ V S D AD++V+NTC   + A  +    +G
Sbjct: 16  KVGFVSLGCPKALVDSERILTQLRVEGYDIVPSYDAADVVVVNTCGFIDSAVTESLDAIG 75

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                         +  V+V GC+ +   E+I    P V  V GPQ Y  + E +  A  
Sbjct: 76  EA---------MNANGKVIVTGCLGKR-PEQIREAYPQVLAVSGPQDYQSVMEAVHAALP 125

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            +          D F  L + D G        A+L I EGC+  C+FC++P  RG  +SR
Sbjct: 126 PR---------HDPFVDL-VPDYGIKLTPRHYAYLKISEGCNHRCSFCIIPSMRGDLVSR 175

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSD---------LLYSLSE 256
            + +V+ EA +L+  GV E+ ++ Q+ +A  G  L   +  + D         L   LSE
Sbjct: 176 PVDEVLCEAERLVRGGVKELLVVSQDTSA-YGVDLKYAERPWRDRMYQTRMKALCEGLSE 234

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           +    RL Y   +P       + A G    L+PYL +P Q  S RILK M R     +  
Sbjct: 235 LGVWTRLHYVYPYPHVDDVLPLMAEG---KLLPYLDIPFQHASPRILKLMKRPGAVEKTL 291

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
           Q + R +++ P+I + S FIVGFPGETD +F + +D +D+    +  +F YSP  G   +
Sbjct: 292 QRVQRWKAMCPEITVRSTFIVGFPGETDAEFESLLDFLDQAQLDRVGAFAYSPVHGASAN 351

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE--KHGKEKGKLVGRSPW 434
            + + V E VK ERL     K  E      +A +G + + L++  +      +    +P 
Sbjct: 352 ALPDPVPEEVKQERLARFMAKQAEISALRLEAKIGSVQQCLVDLIEDDIAVARSRADAPE 411

Query: 435 LQS-VVLNSKNHN---IGDIIKVRITDVKISTLYGELV 468
           +   V + +       +GD++ V ITD     L+G+ +
Sbjct: 412 IDGLVHIQNGGELGLKVGDLVDVEITDSDEHDLFGDAL 449


>gi|56751603|ref|YP_172304.1| hypothetical protein syc1594_d [Synechococcus elongatus PCC 6301]
 gi|56686562|dbj|BAD79784.1| hypothetical protein [Synechococcus elongatus PCC 6301]
          Length = 429

 Score =  368 bits (944), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 124/428 (28%), Positives = 206/428 (48%), Gaps = 19/428 (4%)

Query: 44  MEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLV 103
           M  +    GY    +   AD++V+NTC   + A E+    L  +               +
Sbjct: 1   MIGLLAEAGYGIDANEALADVVVVNTCSFIQAAREESVRTLVELAE---------SGKKI 51

Query: 104 VVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERL 163
           V+AGC+AQ   +++L   P    +VG   Y+R+ ++L+R   G+RV           +  
Sbjct: 52  VIAGCLAQHFQDQLLAELPEAIALVGTGDYHRIVDVLQRTESGERVNAISQEPSFIADEN 111

Query: 164 SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVC 223
                 Y       A+L + EGCD  C FC++P+ RG   SRS+  +V EA++L   GV 
Sbjct: 112 LP---RYRTTTSAVAYLRVAEGCDYRCAFCIIPHLRGKRRSRSIESIVAEAKQLAAEGVQ 168

Query: 224 EITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGD 283
           E+ L+ Q +    G    G K   ++LL  L ++  +  +R   ++P  ++  +I A  +
Sbjct: 169 ELVLISQ-ITTNYGLDRYG-KPMLAELLRQLGQVD-VPWIRIHYAYPTGLTPEVIAAIRE 225

Query: 284 LDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGET 343
              ++PYL LP+Q     ILK+MNR        +II++++   PD  + + FI GFPGET
Sbjct: 226 THNVLPYLDLPLQHSHPEILKAMNRPWQGNVNDRIIEKLKEALPDAVLRTTFIAGFPGET 285

Query: 344 DDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQV 403
           ++ FR     + +  +     F +SP  GT   ++   V ++VK  R   L    +    
Sbjct: 286 EEHFRHLQQFIQRHEFDHVGVFAFSPEEGTAAIDLPNPVPDDVKEARRDALMATQQPIAE 345

Query: 404 SFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVLNSKNHNIGDIIKVRITDVK 459
             N A +G++++VLIE+     G  +GRS    P +  VV    +  +G ++ VRITD  
Sbjct: 346 RRNRAQIGRLVDVLIEQEHPSTGLKIGRSARFAPEVDGVVYVQGDAALGQLVTVRITDAD 405

Query: 460 ISTLYGEL 467
           I  L+GE+
Sbjct: 406 IYDLHGEV 413


>gi|293609257|ref|ZP_06691559.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292827709|gb|EFF86072.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 452

 Score =  367 bits (943), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 125/459 (27%), Positives = 207/459 (45%), Gaps = 37/459 (8%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC   + DS R+     ++GY+  +  D ADL+V+NTC   E A ++    +G
Sbjct: 10  KVGFVSLGCPKALVDSERILTQLKTEGYQVASDYDGADLVVVNTCGFIESAVQESLDAIG 69

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                         +  V+V GC+   + ++I +  P V  V G   Y  + E +     
Sbjct: 70  EA---------MSENGRVIVTGCLG-KDEDKIRQMHPNVLKVTGAAAYQDVMEAVHEY-- 117

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                      +       + + G        A+L I EGC+  CTFC++P  RG  +SR
Sbjct: 118 ------VPAPPKHNPFVDLVPEQGIRLTPKHYAYLKISEGCNHRCTFCIIPSMRGDLVSR 171

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYSLSEI 257
            +  V++EA  L   GV EI ++ Q+ +A+      +    +G+  K  F D+  +L ++
Sbjct: 172 PVGSVLEEAAALKRAGVKEILVISQDTSAYGVDTKYKLDFWNGQPVKTKFFDMCEALGQL 231

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
              VRL Y   +P   +   + A G    ++PYL +P Q  S RILK M R   +    +
Sbjct: 232 GIWVRLHYVYPYPHVDAVIDLMAQG---KILPYLDIPFQHASPRILKLMKRPAHSENTLE 288

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
            I   R   PD+ I S F+VGFPGET++DF+  +D + +    +   F YSP  G   ++
Sbjct: 289 KIKLWREKCPDLVIRSTFVVGFPGETEEDFQILLDWLVEAELDRVGCFTYSPVEGATAND 348

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----P 433
           + + V E +K ER     +  ++   +     +GQ + VL++    E    V RS    P
Sbjct: 349 LPDHVPEEIKQERYERFMQVQQQISAAKLQKRIGQTMTVLVDSLEDEYPVAVARSYADAP 408

Query: 434 WLQSVVL----NSKNHNIGDIIKVRITDVKISTLYGELV 468
            +   V     +      GD+++V ITD     L+ +L+
Sbjct: 409 EIDGNVFVEDIDKSTIQPGDMLEVEITDADEYDLFAKLI 447


>gi|316934166|ref|YP_004109148.1| MiaB-like tRNA modifying enzyme YliG [Rhodopseudomonas palustris
           DX-1]
 gi|315601880|gb|ADU44415.1| MiaB-like tRNA modifying enzyme YliG [Rhodopseudomonas palustris
           DX-1]
          Length = 441

 Score =  367 bits (943), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 134/462 (29%), Positives = 209/462 (45%), Gaps = 36/462 (7%)

Query: 18  VDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA 77
           + Q   P+  FV S GC   + DS R+     ++GYE     D ADL+++NTC   + A 
Sbjct: 1   MQQAAAPKISFV-SLGCPKALVDSERIITRLRAEGYELARKHDGADLVIVNTCGFLDSAK 59

Query: 78  EKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLP 137
           ++  + +G                 V+V GC+  AE E+I    P V  + GPQ Y  + 
Sbjct: 60  QESLAAIGEAMAANGK---------VIVTGCMG-AEPEQIEAAYPGVLSITGPQQYESVL 109

Query: 138 ELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197
           + + RAR        D           +   G        A+L I EGC+  C+FC++P 
Sbjct: 110 DAVHRARPALHNPHLDL----------VPPQGVRLTPRHYAYLKISEGCNNRCSFCIIPK 159

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE--------KCTFSD 249
            RG  +SR    V+ EA KL+  GV E+ ++ Q+ +A+       E        +  F D
Sbjct: 160 LRGDLVSRPAGDVLREAEKLVAAGVKELLVISQDTSAYGVDVKYAESPWKDRAVRAKFLD 219

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
           L   L E+   VRL Y   +P      +I    D   ++PYL +P Q  S  +L+ M R 
Sbjct: 220 LANELGELGAWVRLHYVYPYPHVD--EVIGLMAD-GKVLPYLDIPFQHASPDVLRQMKRP 276

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369
               +    I R R + P++A+ S FIVGFPGET+ DF   +D +D+    +  +FKY P
Sbjct: 277 AAQDKTLDRIKRWREICPELALRSTFIVGFPGETERDFEFLLDWLDEAEIDRVGAFKYEP 336

Query: 370 RLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK--EKGK 427
             G P + + +Q+ + VK ER   L  + +          VG   +V+I++ G    KG+
Sbjct: 337 VAGAPSNALEDQIADEVKQERWNRLMARQQAISARRLKRKVGTRQQVIIDEIGPTVAKGR 396

Query: 428 LVGRSPWLQSVVLNSK--NHNIGDIIKVRITDVKISTLYGEL 467
               +P +   V  S      IG+I+  +I       L+G +
Sbjct: 397 SKADAPEIDGAVYLSSRRPLRIGEIVTAKIDRADAYDLHGTV 438


>gi|289758861|ref|ZP_06518239.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|289714425|gb|EFD78437.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
          Length = 423

 Score =  367 bits (943), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 147/377 (38%), Positives = 226/377 (59%), Gaps = 14/377 (3%)

Query: 9   GVAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLN 68
           GV    +    +    + + V++YGCQMNV+DS R+  +  + GY R     +AD++V N
Sbjct: 42  GVTGEGAGPPVRRAPARTYQVRTYGCQMNVHDSERLAGLLEAAGYRRATDGSEADVVVFN 101

Query: 69  TCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVV 128
           TC +RE A  ++Y  L  +   K +      D+ + V GC+AQ + + +LRR+P V+VV 
Sbjct: 102 TCAVRENADNRLYGNLSHLAPRKRA----NPDMQIAVGGCLAQKDRDAVLRRAPWVDVVF 157

Query: 129 GPQTYYRLPELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCD 187
           G      LP LLERAR  K   V+   +++     L       +R+    A+++I  GC+
Sbjct: 158 GTHNIGSLPTLLERARHNKVAQVEIAEALQQFPSSLP-----SSRESAYAAWVSISVGCN 212

Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG----E 243
             CTFC+VP  RG E+ RS + ++ E R L+++GV E+TLLGQNVNA+     D      
Sbjct: 213 NSCTFCIVPSLRGREVDRSPADILAEVRSLVNDGVLEVTLLGQNVNAYGVSFADPALPRN 272

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
           +  F++LL +  +I GL R+R+T+ HP + +D +I+A      + P LH+P+QSGSDRIL
Sbjct: 273 RGAFAELLRACGDIDGLERVRFTSPHPAEFTDDVIEAMAQTRNVCPALHMPLQSGSDRIL 332

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           ++M R + A  Y  II+R+R+  P  AI++D IVGFPGET++DF AT+D+V +  +A AF
Sbjct: 333 RAMRRSYRAERYLGIIERVRAAIPHAAITTDLIVGFPGETEEDFAATLDVVRRARFAAAF 392

Query: 364 SFKYSPRLGTPGSNMLE 380
           +F+YS R GTP + +  
Sbjct: 393 TFQYSKRPGTPAAQLDG 409


>gi|310826527|ref|YP_003958884.1| 2-methylthioadenine synthetase [Eubacterium limosum KIST612]
 gi|308738261|gb|ADO35921.1| 2-methylthioadenine synthetase [Eubacterium limosum KIST612]
          Length = 435

 Score =  367 bits (943), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 128/430 (29%), Positives = 223/430 (51%), Gaps = 17/430 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +     + GC++N YD+  M ++F   GY  V   + AD+ V+NTC +      K  + +
Sbjct: 4   KTVAFHTLGCKVNSYDTEAMMEIFEKAGYRIVGFAEYADVYVVNTCTVTHLGDRKSRNMM 63

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            + R       +   D ++V  GC  Q   +E+ +    V++++G +    +   +E  +
Sbjct: 64  RKAR-------RTNPDAVIVAVGCYVQVAPDEV-QAIEEVDLIIGTKNRADIVADIEAYQ 115

Query: 145 FGKRVVD--TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
             K   +  +D   E  +E L+I +     K    AFL +QEGC++FCT+C+VP+ RG  
Sbjct: 116 KDKTQNNFVSDIMREHHYEDLNITE----TKGKTRAFLKVQEGCNQFCTYCIVPFARGPV 171

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR +  V+ E +++  +G  E+ L G ++ A  G  L G+      L+ ++ +++G+ R
Sbjct: 172 RSRPVDAVLSEVKRVAAHGYAEVVLTGIHI-ASYGVDL-GDGVDLLSLIRAVDKVEGVKR 229

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R  +  P  +++  ++   ++    P+ HL +QSG D +L  M R++T  +Y +I+ R+
Sbjct: 230 IRLGSLEPLLLTEEFVQGLSEVRAFCPHFHLSLQSGCDTVLSRMGRKYTTAQYAEIVKRV 289

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R      AI++D +VGFPGET+++F AT+  V++I + Q   FKYS R GT       QV
Sbjct: 290 RRAFDYPAITTDIMVGFPGETEEEFEATLAFVEQIHFYQVHVFKYSRRKGTKADAFQGQV 349

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
            E +K ER   L ++ R  +  F  A  G+ + VL E+  KE+G   G +     VVL +
Sbjct: 350 PEEIKTERSHRLTQRARACEQDFLKANAGRTVPVLYER-AKEEGVYEGHTDNYIPVVLKT 408

Query: 443 KNHNIGDIIK 452
                G II+
Sbjct: 409 IEKMNGKIIE 418


>gi|289433046|ref|YP_003462919.1| RNA modification enzyme, MiaB family [Dehalococcoides sp. GT]
 gi|288946766|gb|ADC74463.1| RNA modification enzyme, MiaB family [Dehalococcoides sp. GT]
          Length = 418

 Score =  367 bits (943), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 150/443 (33%), Positives = 232/443 (52%), Gaps = 34/443 (7%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           +++ + GCQMN  +S R+  +F   GY   +  +DA+L+++N+C +RE A  KV + L  
Sbjct: 4   YYLWTIGCQMNQAESDRLGRLFELWGYSLADKAEDAELVLVNSCVVREHAENKVVNRLHL 63

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           +R+LKN        L + + GC+   +   I ++ P V+ + GP +     E+       
Sbjct: 64  LRSLKNK----NPKLKIALTGCLVGQDISLIKKKFPFVDYIFGPGSMPDWREI------- 112

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
                                     +  V+A +TI +GC+ FCT+CVVPY RG E SRS
Sbjct: 113 ------------------PEGFILPLRPPVSANVTIMQGCNNFCTYCVVPYRRGREKSRS 154

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
           ++++  E  +L+  G  E+ LLGQNV++  G  L  EK   +DLL +L +I GL+R+R+ 
Sbjct: 155 IAEIGCEVAELVRRGSREVVLLGQNVDS-YGHELP-EKPCLADLLSALHDIPGLLRIRFL 212

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
           TSHP+D+S  LI A   L  +   L LPVQSG D IL +M R +T  +YR++++RI++  
Sbjct: 213 TSHPKDISQKLIDAMAHLPKVCRSLSLPVQSGDDTILAAMRRGYTNQQYRELVERIKTAM 272

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN-MLEQVDEN 385
           PDI++ +D IVGFP E ++ F  +  L+  IGY       YSPR  T  +  M + V   
Sbjct: 273 PDISLQTDLIVGFPSENEEQFNQSYKLMADIGYDAIHVAAYSPRPQTVAARDMADDVPVI 332

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445
            K  RL  ++   +E     N A +    EVL+E   K   K  GR+   + V L S   
Sbjct: 333 EKKRRLKLIEDLQKETVGKANAALMDTFAEVLVEGLQK--NKWQGRTLGGKLVFLESDLP 390

Query: 446 NIGDIIKVRITDVKISTLYGELV 468
             G ++KV+I      +L  +LV
Sbjct: 391 LEGCLVKVKIFKTSPWSLQAKLV 413


>gi|222099771|ref|YP_002534339.1| MiaB-like tRNA modifying enzyme YliG [Thermotoga neapolitana DSM
           4359]
 gi|221572161|gb|ACM22973.1| MiaB-like tRNA modifying enzyme YliG [Thermotoga neapolitana DSM
           4359]
          Length = 430

 Score =  367 bits (943), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 130/444 (29%), Positives = 214/444 (48%), Gaps = 22/444 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +  +K  GC  N  D   +  +   +G+E V+++++AD++VL+TC   E A ++    + 
Sbjct: 2   KVGIKVLGCPKNEADCEILAGLLKERGHEIVHNVEEADVVVLDTCAFIEDAKKESIDEIL 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                K           +VV GC+ Q    E+ +  P V+  +G     ++  LLE    
Sbjct: 62  SFVEAKEDY-----GYRLVVKGCLVQRYYRELKKEIPEVDQWIGVVAPEKIVSLLE---- 112

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                + +  V  + E +       N +    A++ I +GCD+ CTFC +P  +G   SR
Sbjct: 113 -----NGEDLVPQRPETVYSYRKRINLEEKPYAYVKISDGCDRKCTFCSIPSFKGNLKSR 167

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           S+  +V E   L+  G  EI L+ Q+  +  G+ L G K   SDLL  L+ +KG   +R 
Sbjct: 168 SVEDIVHEVEDLLAEGKKEIILVAQDTTS-YGEDLYG-KQALSDLLRRLNSLKGDFWIRV 225

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
              HP  ++D +I     L+ ++ Y  +PVQ GSDRIL  M R  ++ E + ++ RIR  
Sbjct: 226 MYLHPDHLTDEIIDTILKLEKVVNYFDVPVQHGSDRILTLMGRIRSSKELKNMLLRIRDK 285

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            PD  + +  IVGFPGET++DF      V+++ + +   F YS   GT  S++  +VD  
Sbjct: 286 APDAVLRTSVIVGFPGETEEDFEELKRFVEEVKFDKLGVFVYSDEEGTVASSLKNKVDPE 345

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVLN 441
               R   L     E      D  VG+ ++ L+E  G+E G L+GR+    P +  VV  
Sbjct: 346 TARRRQEELLLLQAEISYERLDRFVGKSMKALVE--GRENGYLIGRTFTEAPEVDGVVFI 403

Query: 442 SKNHNIGDIIKVRITDVKISTLYG 465
                +GD ++V I +     ++G
Sbjct: 404 KGRGEMGDFLEVTIEEHDEYDMWG 427


>gi|254479999|ref|ZP_05093247.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [marine gamma
           proteobacterium HTCC2148]
 gi|214039561|gb|EEB80220.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [marine gamma
           proteobacterium HTCC2148]
          Length = 441

 Score =  367 bits (943), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 128/455 (28%), Positives = 205/455 (45%), Gaps = 33/455 (7%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
            Q+    S GC   + DS R+       GY+ V S  DA+++V+NTC   + A ++    
Sbjct: 6   KQKVGFISLGCPKALVDSERILTQLKMDGYDIVPSYQDAEVVVVNTCGFIDSAKQESLDA 65

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEE-ILRRSPIVNVVVGPQTYYRLPELLER 142
           +G              +  V+V GC+ + +    I+   P V  V GP  Y  +   +  
Sbjct: 66  IGEA---------ISENGKVIVTGCMGKGDDANSIMELHPKVLAVSGPAAYEEVVGAVHE 116

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
                          D +  L    G     R   A+L I EGC+  C+FC++P  RG  
Sbjct: 117 Y-------VPPNPHHDPYTDLVPPQGIKLTPRHY-AYLKISEGCNHRCSFCIIPDMRGDL 168

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYSL 254
           +SR +  V++EA +L+  GV E+ ++ Q+ +A+      R    +G   K     L  +L
Sbjct: 169 VSRPIGDVMEEAERLVRAGVRELLVISQDTSAYGIDTKFRTGFWNGRPLKTHMQQLCEAL 228

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
           ++    VRL Y   +P       + A G    ++PYL +P+Q GS  +LK M R   A +
Sbjct: 229 ADFGVWVRLHYVYPYPHVDKVIPLMAEG---KILPYLDVPLQHGSPDVLKRMKRPAAAEK 285

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
             + I   RSV PDI + S FIVGFPGETD DF   +D +D+    +   F+YSP  G  
Sbjct: 286 SLERIQAWRSVCPDITLRSTFIVGFPGETDKDFDILLDFIDEAQLDRVGCFQYSPVKGAR 345

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRS 432
            +++   V E +K ER        +E   +     +G  IE+LI++   E   G+    +
Sbjct: 346 ANDLPNHVPEELKQERWERFMALQQEISTAKLQQKLGSTIEILIDEVDSEGAIGRSSADA 405

Query: 433 PWLQSVVL--NSKNHNIGDIIKVRITDVKISTLYG 465
           P +   V    + + N GD+++  +T      L+ 
Sbjct: 406 PEIDGKVFLDGATDLNPGDLVEAEVTAANEYDLWA 440


>gi|296157787|ref|ZP_06840621.1| MiaB-like tRNA modifying enzyme YliG [Burkholderia sp. Ch1-1]
 gi|295892033|gb|EFG71817.1| MiaB-like tRNA modifying enzyme YliG [Burkholderia sp. Ch1-1]
          Length = 461

 Score =  367 bits (943), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 125/482 (25%), Positives = 210/482 (43%), Gaps = 48/482 (9%)

Query: 13  MVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHI 72
           M +      I   +    S GC   + DS ++     ++GYE   + D ADL+V+NTC  
Sbjct: 1   MSATPPIAPIAAPKVGFVSLGCPKALVDSEQIITQLRAEGYEISGTYDGADLVVVNTCGF 60

Query: 73  REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEE----ILRRSPIVNVVV 128
            ++A ++    +G              +  V+V GC+   +       I    P V  V 
Sbjct: 61  IDEAVQESLDAIGEA---------LNENGKVIVTGCLGAKKSASGSGLIEEVHPKVLAVT 111

Query: 129 GPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
           GP     + + +                 D F  L     G        A+L I EGC+ 
Sbjct: 112 GPHALGEVMQHVHTHLP---------KPHDPFVDLVPA-AGVKLTPRHYAYLKISEGCNH 161

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDG 242
            CTFC++P  RG  +SR ++ V+ EA  L  +GV E+ ++ Q+ +A+      R    +G
Sbjct: 162 RCTFCIIPSMRGDLVSRPVADVMLEAENLFKSGVKELLVISQDTSAYGVDVKYRTGFWNG 221

Query: 243 E--KCTFSDLLYSLSEI----KGLVRLRYTTSHPRDMSDCLIKAHGDLD-VLMPYLHLPV 295
           +  K   +DL+ +L E+       VRL Y   +P       + A G     ++PYL +P 
Sbjct: 222 KPIKTRMTDLVGALGELAAQYGAWVRLHYVYPYPSVDEVIPMMAEGPFKGHVLPYLDVPF 281

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
           Q     +LK M R   A +  + + + R + PD+ I S FI GFPGET++ F+  +D + 
Sbjct: 282 QHAHPEVLKRMKRPANAEKVMERVKKWREMCPDLTIRSTFIAGFPGETEEQFQTLLDFIR 341

Query: 356 KIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIE 415
           +    +   F YSP  G   + +   + + V+ ER     +   E         VG+ ++
Sbjct: 342 EAELDRVGCFAYSPVQGATANELDGALPDEVREERRARFMEVAEEVSAKRIAKKVGKTLK 401

Query: 416 VLIEKHGKEKGKLVGRS----PWLQSVVLNS------KNHNIGDIIKVRITDVKISTLYG 465
           VL+++   + G  +GR+    P +  VV  +      K + +GD + V+IT      L+G
Sbjct: 402 VLVDEINADGG--IGRTAADAPEIDGVVYIAPAVKASKRYKVGDFVSVKITGADGHDLWG 459

Query: 466 EL 467
           E+
Sbjct: 460 EV 461


>gi|187923838|ref|YP_001895480.1| MiaB-like tRNA modifying enzyme YliG [Burkholderia phytofirmans
           PsJN]
 gi|238065311|sp|B2T3U5|RIMO_BURPP RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|187715032|gb|ACD16256.1| MiaB-like tRNA modifying enzyme YliG [Burkholderia phytofirmans
           PsJN]
          Length = 461

 Score =  367 bits (943), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 126/481 (26%), Positives = 212/481 (44%), Gaps = 49/481 (10%)

Query: 14  VSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIR 73
            +  +     P+  FV S GC   + DS ++     ++GYE   + D ADL+V+NTC   
Sbjct: 3   ATPPIVPTATPKVGFV-SLGCPKALVDSEQIITQLRAEGYEISGTYDGADLVVVNTCGFI 61

Query: 74  EKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEE----ILRRSPIVNVVVG 129
           ++A ++    +G              +  V+V GC+   +       I    P V  V G
Sbjct: 62  DEAVQESLDAIGEA---------LNENGKVIVTGCLGAKKSASGSGLIEEVHPKVLAVTG 112

Query: 130 PQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKF 189
           P     + + +                 D F  L     G        A+L I EGC+  
Sbjct: 113 PHALGEVMQHVHTHLP---------KPHDPFVDLVPA-AGVKLTPRHYAYLKISEGCNHR 162

Query: 190 CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE 243
           CTFC++P  RG  +SR ++ V+ EA  L  +GV E+ ++ Q+ +A+      R    +G+
Sbjct: 163 CTFCIIPSMRGDLVSRPVADVMLEAENLFKSGVKELLVISQDTSAYGVDVKYRTGFWNGK 222

Query: 244 --KCTFSDLLYSLSEI----KGLVRLRYTTSHPRDMSDCLIKAHGDLD-VLMPYLHLPVQ 296
             K   +DL+ +L E+       VRL Y   +P       + A G     ++PYL +P Q
Sbjct: 223 PIKTRMTDLVGALGELAAQYGAWVRLHYVYPYPSVDEVIPMMAEGPYKGHVLPYLDVPFQ 282

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
                +LK M R   A +  + + + R + PD+ I S FI GFPGET++ F+  +D + +
Sbjct: 283 HAHPEVLKRMKRPANAEKVMERVKKWREMCPDLTIRSTFIAGFPGETEEQFQTLLDFIRE 342

Query: 357 IGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEV 416
               +   F YSP  G   + +   + + V+ ER     +   E         VG+ ++V
Sbjct: 343 AELDRVGCFAYSPVEGATANELDGALPDEVREERRARFMEVAEEVSAKRIAKKVGKTLKV 402

Query: 417 LIEKHGKEKGKLVGRS----PWLQSVVLNS------KNHNIGDIIKVRITDVKISTLYGE 466
           L+++   + G  +GR+    P +  VV  +      K + +GD + V+IT      L+GE
Sbjct: 403 LVDEINADGG--IGRTAADAPEIDGVVYIAPAAKASKRYKVGDFVSVKITGADGHDLWGE 460

Query: 467 L 467
           +
Sbjct: 461 V 461


>gi|282881454|ref|ZP_06290128.1| MiaB-like protein [Prevotella timonensis CRIS 5C-B1]
 gi|281304680|gb|EFA96766.1| MiaB-like protein [Prevotella timonensis CRIS 5C-B1]
          Length = 436

 Score =  367 bits (943), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 122/450 (27%), Positives = 210/450 (46%), Gaps = 35/450 (7%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDAD--LIVLNTCHIREKAAEKVYSFLGR 86
           + + GC  N+ DS ++  +F   GY   +  +  D  + V+NTC   E A E+  + +  
Sbjct: 11  IITMGCSKNLVDSEKLMRLFEDNGYRCTHDSESPDGEIAVINTCGFIESAKEESINTILS 70

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
               K    KEG    + V GC+++   +E+    P V+   G   Y +L   L ++   
Sbjct: 71  FVEAK----KEGRLKKLFVMGCLSERYKDELENEIPEVDKFYGKFNYKQLLSDLGKSEIS 126

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
                            S     +       A+L I EGCD+ C +C +P   G   SR 
Sbjct: 127 -----------------SCHGLRHLTTPRHYAYLKISEGCDRQCAYCAIPLMTGKHKSRL 169

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
              ++ E + ++  GV E  ++ Q +  + G+ +DG K   +DL+ +++EI+G+  +R  
Sbjct: 170 KLDILTEVKDMVAQGVKEFQVIAQELT-YYGRDIDG-KQHIADLISAIAEIEGVQWIRLH 227

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
            ++P      L+    +   +  YL + +Q  SD +L  M+R  T  E   +I  IR+  
Sbjct: 228 YAYPNQFPLELLDVIRENKKVCNYLDIALQHISDGVLSRMHRHVTKLETLNLIKTIRAKA 287

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQVDEN 385
           P I + +  +VGFPGET+++F+  +D V    + +  +F YS   GT G+ +  + V   
Sbjct: 288 PGIHLRTTLMVGFPGETEEEFQELLDFVRWARFERMGAFMYSEEEGTYGALHYQDDVSLA 347

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVLN 441
           VK +RL  L    +E         +G+ ++V+I++  KE    +GR+    P +   VL 
Sbjct: 348 VKQQRLDQLMAVQQEISAEIEAEKIGKTMKVIIDR--KENDYYIGRTEYCSPDVDPEVLI 405

Query: 442 ---SKNHNIGDIIKVRITDVKISTLYGELV 468
               KN  IG   +V+ITD +   LYGE+V
Sbjct: 406 HSAGKNLEIGAFYQVKITDAEEFDLYGEVV 435


>gi|224045698|ref|XP_002191115.1| PREDICTED: CDK5 regulatory subunit associated protein 1-like 1
           [Taeniopygia guttata]
          Length = 582

 Score =  367 bits (943), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 119/457 (26%), Positives = 212/457 (46%), Gaps = 19/457 (4%)

Query: 15  SQIVDQCIVP--QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHI 72
            +     I+P  Q+ +++++GC  N  D   M     + GY   ++  +ADL +LN+C +
Sbjct: 50  DEPPSDSIIPGVQKIWIRTWGCSHNNSDGEYMAGQLAAYGYTITDNSAEADLWLLNSCTV 109

Query: 73  REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT 132
           +  A +   + + + +  K           VV+AGCV QA+  +   +      ++G Q 
Sbjct: 110 KNPAEDHFRNSIKKAQEGKKK---------VVLAGCVPQAQPRQEYLKG---LSIIGVQQ 157

Query: 133 YYRLPELLERARFGKRVVDTDYSVED-KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCT 191
             R+ E++E    G  V       ++ K    + +D    RK  +   ++I  GC   CT
Sbjct: 158 IDRVVEVVEETIKGHSVRLLGQKKDNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACT 217

Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLL 251
           +C   + RG   S  + ++VD A++    GVCEI L  ++  A  G+ +  +       L
Sbjct: 218 YCKTKHARGDLASYPIEELVDRAKQSFQEGVCEIWLTSEDTGA-YGRDIGTDLPKLLWKL 276

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
             +     ++RL  T           +    +   +  +LH+PVQS SD +L  M R + 
Sbjct: 277 VEVIPEGAMLRLGMTNPPYILEHLEEMAKILNHPRVYAFLHIPVQSASDSVLMDMKREYC 336

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
             +++Q++D ++   P I I++D I GFPGETD+DF+ TM LV+   +   F  ++ PR 
Sbjct: 337 VADFKQVVDFLKEKVPGITIATDIICGFPGETDEDFQETMKLVELYRFPSLFINQFYPRP 396

Query: 372 GTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR 431
           GTP + M  QV   VK +R   L +       S  D  VG+   VL+ +   +    V  
Sbjct: 397 GTPAAKMP-QVPAAVKKQRTKDLSQLF--HSYSPYDHKVGERQRVLVTEESFDSNYYVAH 453

Query: 432 SPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           +P+ + V++      +G +++V I +     + G+ V
Sbjct: 454 NPFYEQVLVPKDPLLMGKMVEVDIYEAGKHFMKGQPV 490


>gi|325576888|ref|ZP_08147503.1| MiaB family RNA modification enzyme [Haemophilus parainfluenzae
           ATCC 33392]
 gi|325161094|gb|EGC73212.1| MiaB family RNA modification enzyme [Haemophilus parainfluenzae
           ATCC 33392]
          Length = 453

 Score =  367 bits (943), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 135/465 (29%), Positives = 216/465 (46%), Gaps = 42/465 (9%)

Query: 20  QCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEK 79
           Q   P   FV S GC  N+ DS R+     + GY  V S ++ DL+++NTC   + A ++
Sbjct: 10  QKSTPNIGFV-SLGCPKNLVDSERILTELRTDGYNIVPSYENVDLVIVNTCGFIDSAVQE 68

Query: 80  VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL 139
               +G              +  V+V GC+  A+ ++I +  P V  V GP +Y  +   
Sbjct: 69  SLEAIGEALE---------ENGRVIVTGCLG-AKEDQIRQVHPKVLEVSGPHSYETVMAQ 118

Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           + +              E       +   G        A+L I EGCD  CTFC++P  R
Sbjct: 119 VHKY---------VPKPEHNPYTSLVPKQGVKLTPKHYAYLKISEGCDHRCTFCIIPSLR 169

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE-------------KCT 246
           G   SRS++QV+DEA++L D GV E+ ++ Q+ +A+       E             K  
Sbjct: 170 GDLESRSITQVLDEAKRLADAGVKELLVVSQDTSAYAMDTQRKEGGVKTAFWNGMPIKND 229

Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306
              L   L ++   VRL Y   +P       + A G   +L+PYL +P+Q  S +ILK+M
Sbjct: 230 LMTLCKQLGKLGIWVRLHYVYPYPHVDDLIPLMAEG---LLLPYLDIPLQHASPKILKAM 286

Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
            R        + I + R + PD+ + S FIVGFPGET++DF+  +D + +    +   FK
Sbjct: 287 KRPGKIDRTLERIKQWREICPDLTLRSTFIVGFPGETEEDFQMLLDFLKEAQLDRVGCFK 346

Query: 367 YSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK- 425
           +SP  G   + M +QV E+VK ER     +  +E         +GQ ++V++++   E  
Sbjct: 347 FSPVEGALATEMADQVPEDVKEERFHRFMQLQQEISAERLKQKIGQTLDVIVDEIDNEGI 406

Query: 426 -GKLVGRSPWLQSVV----LNSKNHNIGDIIKVRITDVKISTLYG 465
            G+    +P +  +V    L+     +G+ IKV IT      L+G
Sbjct: 407 IGRTKADAPEVDGLVYIENLSGTPVKVGEFIKVTITHSDEYDLWG 451


>gi|126662084|ref|ZP_01733083.1| 2-methylthioadenine synthetase [Flavobacteria bacterium BAL38]
 gi|126625463|gb|EAZ96152.1| 2-methylthioadenine synthetase [Flavobacteria bacterium BAL38]
          Length = 433

 Score =  367 bits (943), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 120/459 (26%), Positives = 215/459 (46%), Gaps = 33/459 (7%)

Query: 17  IVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA 76
           +  + +   +  V + GC  N YDS  +     + G +  +  ++ +++V+NTC   + A
Sbjct: 1   MRTKSLKKNKINVITLGCSKNTYDSEVLMGQLKANGKDVAH-EEEGNIVVINTCGFIDNA 59

Query: 77  AEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL 136
            E+  + +    + K+     G    V V GC+++    ++ +  P V+   G      L
Sbjct: 60  KEESVNTILEYVDKKDQ----GLVDKVFVTGCLSERYRPDLEKEIPDVDQYFGT---TEL 112

Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
           P LL       + +  DY  E   ERL+     Y       A+L I EGCD+ C+FC +P
Sbjct: 113 PLLL-------KALGADYKHELLGERLTTTPKNY-------AYLKIAEGCDRPCSFCAIP 158

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256
             RG  +S+ + ++V EA  L   GV E+ L+ Q++  + G  L  +K   ++LL +L++
Sbjct: 159 LMRGKHVSQPIEKLVKEAEGLAKKGVKELILIAQDLT-YYGLDLY-KKRNLAELLENLAK 216

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           ++G+  +R   + P      ++        +  Y+ +P+Q  SD ILKSM R  T  +  
Sbjct: 217 VEGIEWIRLHYAFPSGFPMDVLDLMKREPKICNYIDIPLQHISDNILKSMKRGTTKEKTT 276

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
           +++   R   P +AI +  IVG+PGET +DF    D V ++ + +   F YS    T   
Sbjct: 277 KLLQEFRERVPGMAIRTTLIVGYPGETQEDFEILRDWVQEMKFERLGCFTYSHEENTGAF 336

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS---- 432
            + + V + VK  R   +     +     N   +GQ  + +I++  KE    +GR+    
Sbjct: 337 VLEDDVPQEVKQARAAEIMDLQSQISWDLNQEKIGQTFKCVIDR--KEGQYFIGRTEFDS 394

Query: 433 PWLQS-VVLNSKN--HNIGDIIKVRITDVKISTLYGELV 468
           P + + V++++       GD + ++ITD     LY E V
Sbjct: 395 PDVDNEVLVDASKFYLKTGDFVNLKITDATEFDLYAEPV 433


>gi|254526318|ref|ZP_05138370.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Prochlorococcus
           marinus str. MIT 9202]
 gi|221537742|gb|EEE40195.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Prochlorococcus
           marinus str. MIT 9202]
          Length = 454

 Score =  367 bits (942), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 122/453 (26%), Positives = 220/453 (48%), Gaps = 26/453 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +      GC+ N+ D+  M+ +   +GYE  ++++DA+++V+NTC   + A E+    + 
Sbjct: 15  KVAFSHVGCEKNLVDTEHMQGLLDKEGYEVDSNINDANVVVVNTCSFIQTAREESIRKIL 74

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                            V+VAGC+AQ   +E+++  P +  V+G   Y ++ ++L+R   
Sbjct: 75  EY---------TNQGKEVIVAGCMAQHFKDELIKEIPEIKGVIGTGDYQKIAKVLDRVEK 125

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G+ V +     E   +        +  K    A+L I EGC+  C FC++P  RG + SR
Sbjct: 126 GEIVNEVSKIPEFIADEEIP---RFVDKNKFVAYLRIAEGCNYNCAFCIIPKLRGPQRSR 182

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           ++  +V EA+ L+  G+ EI L+ Q +    G+ + G K + + LL  LS++  +  +R 
Sbjct: 183 TIESIVSEAKSLVKQGIQEIILISQ-ITTNYGQDIYG-KPSLAKLLNELSKVP-IPWIRI 239

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
             ++P  ++D +I+A  D   ++PY  LP+Q     +LKSMNR   A     I+++IR  
Sbjct: 240 HYAYPTGLTDEVIRAFRDSKNIVPYFDLPLQHSHPDVLKSMNRPWQASLNESILEKIREE 299

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P   + +  IVGFPGE  + F   ++ +D+  +     F +SP  GT   ++  +V   
Sbjct: 300 IPSAVLRTSLIVGFPGEKKEHFEHLLEFLDRHKFDHVGVFIFSPEEGTAAFDLPNKVSPE 359

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVLN 441
           V   R   +    +      N + VG  +++L+EK   +  +L+GR+    P +   V+ 
Sbjct: 360 VAEARKDNVISVQQNISKDKNQSYVGLKMKILVEKIS-DNNELIGRTYNFAPEIDGTVIL 418

Query: 442 SKNHN------IGDIIKVRITDVKISTLYGELV 468
           S          IG  ++  I+      LYGE +
Sbjct: 419 SVKDKIDLKNYIGKFVEANISFADEYDLYGETI 451


>gi|332827121|gb|EGJ99906.1| ribosomal protein S12 methylthiotransferase rimO [Dysgonomonas
           gadei ATCC BAA-286]
          Length = 431

 Score =  367 bits (942), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 119/456 (26%), Positives = 210/456 (46%), Gaps = 34/456 (7%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEK 79
           +   R  V + GC  N+ DS  +     + GY   +  D  + +++V+NTC     A E+
Sbjct: 1   MKKNRIDVITLGCSKNLVDSELLMKQLLANGYTVKHDPDKSEGEIVVINTCGFIGDAKEE 60

Query: 80  VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL 139
             + +      K    KE     + V GC+     EE+    P V+   G   +  L   
Sbjct: 61  SINMILEFAEAK----KERKLNKLFVMGCLTDRYMEELKAEIPEVDSFYGKFGWKALISD 116

Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           L +           Y  E   ER       Y       A+L I EGC++ C++C +P   
Sbjct: 117 LGK----------SYHKELALERNITTPSHY-------AYLKISEGCNRACSYCSIPIMT 159

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G   SR + +V +E R L+ +GV E  ++ Q++ ++ G   + ++    +L+  +++I+G
Sbjct: 160 GKHQSRQIEEVEEEVRHLVASGVKEFQVIAQDL-SYYGLD-NYKQAKLPELIDRIAKIEG 217

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           +  +R   ++P +    L+    + + +  YL + +Q  SD +LK M R  T  +   +I
Sbjct: 218 VEWIRLHYAYPANFPYDLLPVMRNNENVCKYLDIALQHISDNMLKKMRRNITKEQTYNLI 277

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG-SNM 378
            RIR   P I I +  +VG PGE+  DF   +  V  + + +  +F YS   GT   ++ 
Sbjct: 278 KRIREEVPGIHIRTTLMVGHPGESHKDFEELLQFVKDVRFDRMGAFPYSHEDGTYAYAHY 337

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PW 434
            +++ + VK ER+  L        +  N+  +G  ++V++++  +E    +GR+    P 
Sbjct: 338 RDEISDAVKQERMDVLMALQERIALDINEQKIGNTLKVIVDR--EESDYYIGRTEYDSPE 395

Query: 435 LQSVVLNSKN--HNIGDIIKVRITDVKISTLYGELV 468
           +   VL  KN   NIGD   VRIT  +   LYGE++
Sbjct: 396 VDPEVLIKKNKMLNIGDFYNVRITGAQPFDLYGEVI 431


>gi|218288632|ref|ZP_03492909.1| MiaB-like tRNA modifying enzyme [Alicyclobacillus acidocaldarius
           LAA1]
 gi|218241289|gb|EED08464.1| MiaB-like tRNA modifying enzyme [Alicyclobacillus acidocaldarius
           LAA1]
          Length = 475

 Score =  367 bits (942), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 140/453 (30%), Positives = 218/453 (48%), Gaps = 36/453 (7%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           +P      + GC++N YD+  +   F  +GY +V     AD+ V+NTC +      K   
Sbjct: 1   MP-TVAFHTLGCKVNFYDTEGIWQTFKRRGYTQVPFDSKADVYVVNTCTVTHTGDRKSRQ 59

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            + R        ++   D +VVV GC AQ   +EI  R   V++VVG     ++ + +E 
Sbjct: 60  MIRRA-------VRTNPDAVVVVTGCYAQIAPDEIA-RIQGVDLVVGNDQKSKIVDHVEA 111

Query: 143 ARFGKRVVDTDYSVEDKFERLSI-VDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
               ++      ++    E   + V     R R   A L IQ+GC+ FCTFC++P  RG+
Sbjct: 112 VLAERKPYLAVGNIMKATEFDELDVPYFEERSR---ANLKIQDGCNNFCTFCIIPRARGL 168

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
             SR    VV +A KL   G  EI L G +     G G D E    +DLL  L  I    
Sbjct: 169 IRSRKPENVVLQATKLARAGYREIVLTGIHTG---GYGEDFENYRLADLLLDLERIDLPF 225

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R ++    ++ D L+        ++P+LH+P+Q+GSD +L+ M+R +T  EY + +  
Sbjct: 226 RIRISSIEASEIDDRLMDVLAASKKVVPHLHIPLQAGSDPVLRRMHRHYTTAEYAEKLQE 285

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R   PD+A+++D IVGFPGETD+ F  T   V   GYAQ   F YSPR GT      +Q
Sbjct: 286 LRRRLPDLAVTTDVIVGFPGETDEQFEETYAFVRAQGYAQLHVFPYSPRRGTAAYKFKDQ 345

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKH---GKEKGK----------- 427
           V E+VK ER+  +     E + ++  + VG+ +EV+ E       ++ +           
Sbjct: 346 VPEDVKRERVARMIALGDELRQAYAASFVGRELEVIAESPLASADDEARRAYSHLPEASR 405

Query: 428 -LVGRSPWLQSVVLNSK-----NHNIGDIIKVR 454
            LVG       V   +         +G++I+VR
Sbjct: 406 MLVGYDGHYLRVAFEAPSGVPLESMVGEVIRVR 438


>gi|116620691|ref|YP_822847.1| MiaB-like tRNA modifying enzyme YliG [Candidatus Solibacter
           usitatus Ellin6076]
 gi|122255158|sp|Q028J0|RIMO_SOLUE RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|116223853|gb|ABJ82562.1| MiaB-like tRNA modifying enzyme YliG [Candidatus Solibacter
           usitatus Ellin6076]
          Length = 465

 Score =  367 bits (942), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 121/455 (26%), Positives = 203/455 (44%), Gaps = 25/455 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC  N+ DS  M     ++G+E  +  D AD++V+NTC   + A ++    + 
Sbjct: 2   KVGFISLGCPKNLVDSEVMMGQLVAKGHELTSHPDQADVLVVNTCSFIDPAKKESVDTIL 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +   K    K G    ++VAGC+ +    +I    P V+ ++G      + ++ E    
Sbjct: 62  EMAEYK----KIGRAKKLIVAGCLVERYRGDIRTEMPEVDALIGTNELDSIVDICEGMPP 117

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
               ++  Y   D   R+      +       A++ I EGCD  CTFCV+P  RG   SR
Sbjct: 118 STNPLEP-YLYHDLTPRVLATPRHF-------AYMKIAEGCDHPCTFCVIPQYRGAFRSR 169

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI--KGLVRL 263
               VV EA +L   G+ EI L+GQ+     G+ L G K   ++LL  L++I       +
Sbjct: 170 RFESVVSEATRLFQQGIREINLIGQDTT-CYGEDL-GLKDGLAELLARLAQIETPQEKWI 227

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+  ++P  ++  L+    +   L  Y+ +P+Q  S  +LK M R  +   + ++I+RIR
Sbjct: 228 RFLYAYPNKVTQKLLDTLAEHAALAKYIDMPLQHASANVLKRMKRGASGDIFLKLIERIR 287

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              P +AI + FIVGFPGET  DF      V+   +     F YS    +    +  +VD
Sbjct: 288 RTIPGVAIRTSFIVGFPGETAADFDELCAFVEAAKFDNLGVFTYSDEDTSASYALDGKVD 347

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-----KGKLVGRSPWLQSV 438
                 R   L    R+   + N   VG+ + VL+     E     + ++  ++P +  V
Sbjct: 348 GRTIQNRKRRLMAIQRKIARARNRGLVGKEVPVLVSGVSGETDLLWEARMSTQAPEIDGV 407

Query: 439 V----LNSKNHNIGDIIKVRITDVKISTLYGELVV 469
                        G+I ++RIT+     + G L+ 
Sbjct: 408 TLINDFEGSEPRAGEIRRLRITEAHDYDVVGTLLA 442


>gi|291563947|emb|CBL42763.1| MiaB-like tRNA modifying enzyme [butyrate-producing bacterium
           SS3/4]
          Length = 441

 Score =  367 bits (942), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 129/415 (31%), Positives = 213/415 (51%), Gaps = 17/415 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++  + + GC++N Y++  ME +  + GYE V+  + AD+ V+NTC +   A +K    L
Sbjct: 2   RKAALHNLGCKVNAYETEAMEQLLEAAGYEIVSFEEKADVYVINTCSVTNVADKKSRQML 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R +           D +VV AGC  QA  +++   +  V++++G      L  LL+   
Sbjct: 62  HRAKAK-------NPDAVVVAAGCYVQAAADKLREDA-AVDLIIGNNRKADLVPLLDAWF 113

Query: 145 FGKRVVD--TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            GK + +  TD +  +++E+L I      +     AF+ +Q+GC++FC++C++PYTRG  
Sbjct: 114 AGKEIRESITDLAGSNEYEKLHI----NKQAEHTRAFIKVQDGCNQFCSYCIIPYTRGRV 169

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR    V +E + L + G  EI L G ++ +  G     E   F  L+  L EI G+ R
Sbjct: 170 RSRRPEDVEEEVKILAEEGYKEIVLTGIHLTS-YGIDFKDEGIDFLTLIRRLHEIDGIER 228

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+ +  PR +++        L  + P+ HL +QSG D  LK MNR +T  EY    + +
Sbjct: 229 IRFGSLEPRVITEEFASELSRLPKICPHFHLSLQSGCDDTLKRMNRHYTCEEYADRCEIL 288

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R    + AI++D IVGFP ETD DF  T   ++K+ + +   F YS R GT    M +QV
Sbjct: 289 RKHFKNPAITTDVIVGFPAETDADFETTRKFLEKVHFYEMHVFPYSRRAGTRADRMPDQV 348

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK--EKGKLVGRSPWL 435
            E VK ER   L K  ++    +  + VG   E+L+E+     ++  + G +   
Sbjct: 349 PEPVKKERSAILLKLEKKMSGEYRSSFVGTEQEILLEEPATINDEVYMTGYTKEY 403


>gi|253999410|ref|YP_003051473.1| 30S ribosomal protein S12 methylthiotransferase [Methylovorus sp.
           SIP3-4]
 gi|253986089|gb|ACT50946.1| MiaB-like tRNA modifying enzyme YliG [Methylovorus sp. SIP3-4]
          Length = 452

 Score =  367 bits (942), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 123/460 (26%), Positives = 209/460 (45%), Gaps = 37/460 (8%)

Query: 18  VDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA 77
           ++Q I   +    S GC     DS R+     ++GY    S  D+DL+V+NTC   + A 
Sbjct: 12  MNQSIP--KVGFVSLGCPKASSDSERILTQLRAEGYSISGSYQDSDLVVVNTCGFIDSAV 69

Query: 78  EKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLP 137
           ++    +G                 V+V GC+  A+ + +    P V  V GP     + 
Sbjct: 70  QESLDAIGEALAENGK---------VIVTGCLG-AKADVVQNAHPSVLAVTGPHALEEVM 119

Query: 138 ELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197
             +                 D +  L +   G        A+L I EGC+  C+FC++P 
Sbjct: 120 TAVHANLP---------KPHDPYTDL-VPPQGVRLTPKHYAYLKISEGCNHRCSFCIIPS 169

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSD 249
            RG  +SR + +V+ EA  L++ GV E+ ++ Q+ +A+      R    +G   K   ++
Sbjct: 170 MRGDLVSRPIGEVMQEAENLVNAGVSELLVISQDTSAYGVDVKYRTGFWNGRPIKTRMTE 229

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
           L   L ++   VR+ Y   +P       + A G   +++PYL +P Q  S RILK+M R 
Sbjct: 230 LARGLGDLGVWVRMHYVYPYPHVDEIIPLMADG---LILPYLDVPFQHASPRILKAMKRP 286

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369
            ++      I   R + PDI I S FI GFPGET++DF+  +D + +    +   F YS 
Sbjct: 287 ASSENNLARIKAWRDICPDITIRSTFITGFPGETEEDFQMLLDFLQEAELDRVGCFAYSA 346

Query: 370 RLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GK 427
             G   + + + V E +K ERL    +             VG++  VL+++   ++   +
Sbjct: 347 VDGAAANALPDAVPEELKQERLARFMEVQEAISAEKLQRRVGRLETVLVDEVNGDEAIAR 406

Query: 428 LVGRSPWLQSVVL--NSKNHNIGDIIKVRITDVKISTLYG 465
            +  +P +  VV   +++  N GD+++V+ITD     L+G
Sbjct: 407 TMSDAPEIDGVVYLADAEGLNPGDLVEVQITDADGHDLWG 446


>gi|170288753|ref|YP_001738991.1| MiaB-like tRNA modifying enzyme YliG [Thermotoga sp. RQ2]
 gi|238055229|sp|B1LAG0|RIMO_THESQ RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|170176256|gb|ACB09308.1| MiaB-like tRNA modifying enzyme YliG [Thermotoga sp. RQ2]
          Length = 430

 Score =  367 bits (942), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 132/446 (29%), Positives = 212/446 (47%), Gaps = 22/446 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R  +K  GC  N  D   +  +   +G+E V  + DAD++VL+TC   E A  +    + 
Sbjct: 2   RVGIKVLGCPKNEADCEILAGVLRERGHEIVFDVKDADVVVLDTCAFIEDAKRESIDEIF 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
              + K+          +VV GC+ Q   EE+ +  P V+  +G      +   LE+   
Sbjct: 62  SFIDAKDQY-----SYKLVVKGCLVQRYYEELKKEIPEVDQWIGVVDPEEIANALEKGTD 116

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                     V ++ E +       + +    A++ I +GCD+ CTFC +P  +G   SR
Sbjct: 117 ---------LVPNRPETVYRYRKRIDLEERPYAYVKISDGCDRGCTFCSIPSFKGSLRSR 167

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           S+  +  E   L+  G  EI L+ Q+  +  G  L   K    DLL  L+ + G   +R 
Sbjct: 168 SIEDITHEVEDLLKEGKKEIILVAQDTTS-YGIDLY-RKQALPDLLRRLNSLNGEFWIRV 225

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
              HP  +++ +I A  +LD ++ Y  +PVQ GSD+ILK M R  ++ E ++++  IR  
Sbjct: 226 MYLHPDHLTEEIISAMLELDKVVKYFDVPVQHGSDKILKLMGRTKSSEELKKMLSSIRER 285

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            PD  + +  IVGFPGET++DF      V++I + +  +F YS   GT   N+ E+VD  
Sbjct: 286 FPDAVLRTSIIVGFPGETEEDFEELKRFVEEIQFDKLGAFVYSDEEGTVAFNLKEKVDPE 345

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVLN 441
           V   R   L     E   S  D  +G+ ++ L+E  GKE   LVGR+    P +  VV  
Sbjct: 346 VAKRRQEELLLLQAEISNSRLDRFIGRKLKFLVE--GKEGKFLVGRTWTEAPEVDGVVFV 403

Query: 442 SKNHNIGDIIKVRITDVKISTLYGEL 467
                IGD ++V I +     ++G +
Sbjct: 404 RGKGKIGDFLEVVIKEHDEYDMWGSV 429


>gi|221212797|ref|ZP_03585773.1| conserved hypothetical protein [Burkholderia multivorans CGD1]
 gi|221167010|gb|EED99480.1| conserved hypothetical protein [Burkholderia multivorans CGD1]
          Length = 453

 Score =  367 bits (942), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 126/469 (26%), Positives = 208/469 (44%), Gaps = 48/469 (10%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC   + DS ++     ++GYE   + D ADL+V+NTC   ++A ++    +G
Sbjct: 6   KVGFVSLGCPKALVDSEQIITQLRAEGYEISGTYDGADLVVVNTCGFIDEAVQESLDAIG 65

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEE----ILRRSPIVNVVVGPQTYYRLPELLE 141
                            V+V GC+   +       I    P V  V GP     + + + 
Sbjct: 66  EALTENGK---------VIVTGCLGAKKSASGSGLIEEVHPKVLAVTGPHAVGEVMQAVH 116

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
                           D F  L +   G        A+L I EGC+  CTFC++P  RG 
Sbjct: 117 SHLP---------KPHDPFVDL-VPPAGIKLTPRHYAYLKISEGCNHRCTFCIIPSMRGD 166

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYS 253
            +SR +++V+ EA  L  +GV E+ ++ Q+ +A+      R    +G+  K   +DL+ +
Sbjct: 167 LVSRPVAEVMLEAENLFKSGVKELLVISQDTSAYGVDVKYRTGFWNGKPIKTRMTDLVAA 226

Query: 254 LSEI----KGLVRLRYTTSHPRDMSDCLIKAHGDLD-VLMPYLHLPVQSGSDRILKSMNR 308
           L E+       VRL Y   +P       + A G     ++PYL +P Q     +LK M R
Sbjct: 227 LGELAAQYGAWVRLHYVYPYPSVDEVIPLMAEGPFKGHVLPYLDVPFQHAHPEVLKRMKR 286

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
              A +  + + + R + PD+ I S FI GFPGET++ F   +D + +    +   F YS
Sbjct: 287 PANAEKVLERVQKWREICPDLTIRSTFIAGFPGETEEQFETLLDFIREAELDRVGCFAYS 346

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL 428
           P  G   + +   + ++V+ ER     +   E         VG+ ++VLI++   E G  
Sbjct: 347 PVEGASANELDGALPDDVREERRARFMEVAEEVSARRIARKVGKTLKVLIDEVSDEGG-- 404

Query: 429 VGRS----PWLQSVVLN------SKNHNIGDIIKVRITDVKISTLYGEL 467
           +GR+    P +  VV        SK + +GD + V+IT      L+GE+
Sbjct: 405 IGRTAADAPEIDGVVYVEPATKASKRYKVGDFVSVKITGADGHDLWGEV 453


>gi|147669834|ref|YP_001214652.1| RNA modification protein [Dehalococcoides sp. BAV1]
 gi|229890510|sp|A5FPV2|MIAB_DEHSB RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|146270782|gb|ABQ17774.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Dehalococcoides sp. BAV1]
          Length = 418

 Score =  367 bits (942), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 151/443 (34%), Positives = 233/443 (52%), Gaps = 34/443 (7%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           +++ + GCQMN  +S R+  +F   GY   +  +DA+L+++N+C +RE A  KV + L  
Sbjct: 4   YYLWTIGCQMNQAESDRLGRLFELWGYSLADKAEDAELVLVNSCVVREHAENKVVNRLHL 63

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           +R+LKN        L + + GC+   +   I ++ P V+ + GP +     E+       
Sbjct: 64  LRSLKNE----NPKLKIALTGCLVGQDISLIKKKFPFVDYIFGPGSMPDWREI------- 112

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
                                     +  V+A +TI +GC+ FCT+CVVPY RG E SRS
Sbjct: 113 ------------------PEGFILPLRPPVSANVTIMQGCNNFCTYCVVPYRRGREKSRS 154

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
           ++++  E  +L+  G  E+ LLGQNV++  G  L  EK   +DLL +L +I GL+R+R+ 
Sbjct: 155 IAEIGCEVAELVRRGSREVVLLGQNVDS-YGHDLP-EKPCLADLLSALHDITGLLRIRFL 212

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
           TSHP+D+S  LI A   L  +   L LPVQSG D IL SM R +T  +YR++++RI++  
Sbjct: 213 TSHPKDISQKLIDAMAHLPKVCRSLSLPVQSGDDTILASMRRGYTNQQYRELVERIKTAM 272

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQVDEN 385
           PDI++ +D IVGFP E ++ F  +  L+  IGY       YSPR  T  + +M + V   
Sbjct: 273 PDISLQTDLIVGFPSENEEQFNQSYKLMADIGYDAIHVAAYSPRPQTVAAHDMADDVPVI 332

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445
            K  RL  ++   +E     N A +    EVL+E   K   K  GR+   + V L S   
Sbjct: 333 EKKRRLKLIEDLQKETVGKANAALMDTFAEVLVEGLQK--NKWQGRTLGGKLVFLESDLP 390

Query: 446 NIGDIIKVRITDVKISTLYGELV 468
             G ++KV+I      +L  +LV
Sbjct: 391 LEGCLVKVKIFKTSPWSLQAKLV 413


>gi|255080118|ref|XP_002503639.1| predicted protein [Micromonas sp. RCC299]
 gi|226518906|gb|ACO64897.1| predicted protein [Micromonas sp. RCC299]
          Length = 456

 Score =  367 bits (942), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 121/456 (26%), Positives = 210/456 (46%), Gaps = 17/456 (3%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           + S GC  N  D   M    F+ G++ ++  +DAD I++NTC   E A  +    +    
Sbjct: 1   MVSLGCPKNTVDGEVMLGDLFANGFDIIDEHEDADAIIVNTCGFVEDAKNESVDAILAAA 60

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
            +K  + + G    V+V GC+AQ   EE+    P V+VV+G + Y  LP  L      + 
Sbjct: 61  AMKAEQEQGGKKKKVIVTGCLAQRYAEELADEMPEVDVVMGFENYKDLPNTLGEQLGVET 120

Query: 149 VVDTDYSVEDKF---ERLSIVDGGYNRKR---GVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
               D +   +               RKR      A+L + EGCD  CTFC +P  RG  
Sbjct: 121 GAAADGAKRGRVRVGTASPPFRPEALRKRLTPQHYAYLRVAEGCDHKCTFCAIPGFRGKF 180

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            S+    +++EA+ L D G  E+ L+ ++ N W       +    ++LL +L+ I G+  
Sbjct: 181 RSKPWDPIIEEAKALADTGARELCLIAEDTNQWGMDLKASDGRGLAELLEALAVIDGVEW 240

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R   ++P   SD LI A  D+  +  Y+ +P+Q  ++  L  MNR         ++ ++
Sbjct: 241 IRILYAYPSYFSDPLIDAIADIPQVAKYIDIPLQHITNLSLLRMNRP-PRQHTEDLLYKL 299

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R   P +A+ + FI GFPGET+++    M    +  + +  +F YS   GTP +   +QV
Sbjct: 300 RDRIPGLALRTTFISGFPGETEEEHEDLMRFCREFKFERLGAFAYSEEDGTPAATYPDQV 359

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSV 438
           ++ V+  R   L  + ++    F  + VG+ ++V+I+ +  E     GR+    P +  +
Sbjct: 360 EQAVRDLRRDQLIAQQQQISEDFAASRVGREVDVIIDGYNPEFDAWTGRTSLEAPDIDPI 419

Query: 439 VLNSKN------HNIGDIIKVRITDVKISTLYGELV 468
           V  +          +G + + +I    +  L   LV
Sbjct: 420 VFVADPTGGQRALEMGQMRRCKIVGTSLFDLEANLV 455


>gi|309389274|gb|ADO77154.1| SSU ribosomal protein S12P methylthiotransferase [Halanaerobium
           praevalens DSM 2228]
          Length = 445

 Score =  367 bits (942), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 119/448 (26%), Positives = 224/448 (50%), Gaps = 17/448 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ + + GC  N  DS  M       +G++  +   +A++I++NTC   + A E+    +
Sbjct: 3   KYSLMTLGCPKNEVDSQHMNGFLRGDKGFKYTSEFKEAEVIIINTCGFIQDAKEESIETI 62

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
                 K    KE     V+V GC+ Q   EE+ +  P ++ ++G   + ++ ++++   
Sbjct: 63  LTALEYK----KEYNCKSVIVTGCLTQRYSEELKKDIPEIDAILGTSNFDQIVDVIKETL 118

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G   ++T    +  F+  S +    +    V A+L I EGC+  CT+C +P  RG   S
Sbjct: 119 AG---IETGGITKAGFDYSSSLPRELD--NNVYAYLKIAEGCNNNCTYCSIPQIRGPIKS 173

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           RS++ +V EA+++ ++G+ E+ ++ Q+     G  +  E+   + LL  L+EI+ L  +R
Sbjct: 174 RSIADIVAEAKEIAESGIKELIIIAQDTT-QYGVDIY-ERSALAPLLKKLAEIEELKWIR 231

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
              S+P  ++D +I    + + +  Y  LP+Q  S +I K MNR+    +   II++IR+
Sbjct: 232 VLYSYPEFITDEIIDVFAEEEKICNYFDLPIQHSSKKIRKLMNRKGNQEDIANIINKIRN 291

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             PD  + +  I GFPGET+ DF      + K  + +  +F++S   GT    +  +V  
Sbjct: 292 KIPDAKLRTSLITGFPGETESDFENLKKFIKKYKFDRLGAFEFSREEGTAAYKLDNRVPA 351

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR--SPWLQS---VV 439
            VKAER   + +  +E  ++ N   +G+ +EV+IE + +E      R  SP + +   + 
Sbjct: 352 AVKAERKEEIMQLQQEISLAKNKELIGRKLEVIIEDYDQENYLARSRYDSPEIDNQIYIP 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGEL 467
           +  +   IG+I +  I +     L GE+
Sbjct: 412 IKKQKLEIGEIYQAEIKEAFHYDLIGEI 439


>gi|51244669|ref|YP_064553.1| hypothetical protein DP0817 [Desulfotalea psychrophila LSv54]
 gi|81642781|sp|Q6AQ27|RIMO_DESPS RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|50875706|emb|CAG35546.1| conserved hypothetical protein [Desulfotalea psychrophila LSv54]
          Length = 443

 Score =  367 bits (942), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 122/449 (27%), Positives = 215/449 (47%), Gaps = 16/449 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +F + S GC  N+ DS  +       G+E      DADL+++NTC   + A E+    + 
Sbjct: 2   KFHLISLGCAKNLVDSEVVLGCLRDAGWEMT-DEQDADLLLVNTCGFIQPAVEEAVEEIL 60

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            + ++K        +  +VV GC+ Q   E++L   P V++ VG +    + E + +   
Sbjct: 61  ALVDIKADF----PEKKIVVLGCLVQRYKEQLLESLPEVDLFVGTEGVANIAEYVGKLIA 116

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G+         E                R   A++ I EGCD  C++C++P  RG   SR
Sbjct: 117 GEEQDKVIMPTEFLMTAKVPRQQSTPFFR---AWVKITEGCDNRCSYCMIPSIRGPLRSR 173

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           S++ V++E + ++ +GV EI+L+ Q++ A  G  L G+      LL  L     +  +R 
Sbjct: 174 SVADVLEEVQAMVASGVQEISLIAQDLTA-YGDDL-GDDVNLLVLLKELLAKTSVPWIRL 231

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
              +P ++ D L++       ++ YL +P+Q  +DR+L  MNR +   +  + +D+ R+ 
Sbjct: 232 LYLYPSELLDELLQLMAANPRIVKYLDIPIQHVNDRVLHLMNRPYGRADLEEFVDKARAH 291

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            PDIA+ + F+VGFPGET++++    + +          F YS   G P  +  +QVD+ 
Sbjct: 292 MPDIALRTTFLVGFPGETEEEYAEIGEFLRVRKLDHVGVFPYSNEEGAPSEHFPDQVDDE 351

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GRSPW----LQS-VV 439
           +K  R   L +  +E         VG + +VL+E   +E   L+ GR+ +    +   V 
Sbjct: 352 IKESRCARLLELQQELSTEIQKKYVGTVQKVLVEGVSEETDLLLEGRTQYQAADVDGRVY 411

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
           +N      G+I+ + ITD +   L G +V
Sbjct: 412 INEGQVVAGEIVDILITDSQQYDLVGGVV 440


>gi|258544695|ref|ZP_05704929.1| RNA modification enzyme, MiaB-family [Cardiobacterium hominis ATCC
           15826]
 gi|258520062|gb|EEV88921.1| RNA modification enzyme, MiaB-family [Cardiobacterium hominis ATCC
           15826]
          Length = 430

 Score =  367 bits (942), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 131/447 (29%), Positives = 196/447 (43%), Gaps = 31/447 (6%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
               S GC   + DS R+     + GY   +  DDADL+++NTC    +A  +  + +  
Sbjct: 8   VGFISLGCPKALVDSERILTQINADGYAITDRYDDADLVIVNTCGFINEAVAESLNTISE 67

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
                           V+V GC+     E I  R P V  + GPQ Y  +   +      
Sbjct: 68  ALRQNGK---------VIVTGCLGVK-PEIIRARCPDVLAITGPQAYESVMSAVHEHL-- 115

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
                      + +  L I   G        A+L I EGCD  CTFC++P  RG  +SR 
Sbjct: 116 ------PKPAHNPYLDL-IPPAGLKLTPRHYAYLKIAEGCDHHCTFCIIPDLRGRLVSRP 168

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
              V+ EA+ L+  GV E+ ++ Q+ +A+   G D        L   L ++   VRL Y 
Sbjct: 169 ADAVLKEAQNLVKLGVKELLVVSQDTSAY---GADLGARGIHALARELGKLDAWVRLHYV 225

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
             +P      LI    D   ++PYL +P+Q  S RILK+M R        + I R R + 
Sbjct: 226 YPYPDVD--DLIPLMAD-GAILPYLDIPLQHASPRILKAMRRPGNRERTLERIRRWREIC 282

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           PD+A+ S FIVGFPGET+ DF   +  +++    +A  F YSP  G   + + +Q+ E++
Sbjct: 283 PDLALRSTFIVGFPGETEADFEELLAFIEEADINRAGCFAYSPVEGAAANALPDQIPEDI 342

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPW----LQSVVLNS 442
           K ERL                  VG ++ V+I+    +     GR+P+    +  VV  S
Sbjct: 343 KQERLQRFMAAQEAVSARLLADKVGSVLPVMIDAVDADNLAATGRTPYDAPEIDGVVHIS 402

Query: 443 --KNHNIGDIIKVRITDVKISTLYGEL 467
                  GDI+ V I D     LYG +
Sbjct: 403 DIDGIKPGDIVHVEIEDSDAHDLYGRV 429


>gi|325847803|ref|ZP_08170025.1| tRNA methylthiotransferase YqeV [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
 gi|325480821|gb|EGC83874.1| tRNA methylthiotransferase YqeV [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
          Length = 432

 Score =  366 bits (941), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 137/448 (30%), Positives = 235/448 (52%), Gaps = 19/448 (4%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + + F +K+ GC++N Y+S  +E++F  +G+E     D+AD+ V+NTC +   +  K   
Sbjct: 1   MSKTFNIKTLGCKVNQYESEAIEELFKKRGFE--KKEDNADIYVINTCTVTNMSDRKSRQ 58

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            + + R       KE  D ++ V GC +Q +G+E+ +    V++V+G +    + +L E 
Sbjct: 59  TISKAR-------KENKDAIIAVIGCYSQVKGDEV-KEIEGVDIVLGSRNKEEVVDLCEN 110

Query: 143 --ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
                 K     ++ + +  E L I     N+     A++ IQ+GC+ +C++C++PY RG
Sbjct: 111 FINDHVKTKDVEEFKIGEAIEDLEIS----NQADMTRAYIKIQDGCNMYCSYCLIPYARG 166

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
              SR L  ++DEA++L DNG  EI L G +V A  GK LD    +  D++  +S+I G+
Sbjct: 167 NIASRDLVSIIDEAKRLRDNGFKEIVLTGIHV-ASYGKDLDLN-ISLIDVIEHISKIDGI 224

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R ++  PR +    ++   D      + HL +QSGSD +LK MNR++    +++ +D
Sbjct: 225 ERIRLSSMEPRHIDREFLQRMKDTKKACDHFHLSLQSGSDDVLKLMNRKYDTKIFKEKVD 284

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
            IR   P+  +++D IVGFP E++ +   T D V  I +++   FKYS R GT  ++M +
Sbjct: 285 LIREYFPNAGLTTDIIVGFPNESEKNHEQTKDFVRDIKFSKTHLFKYSKRDGTKAASMKD 344

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440
           QVD N K  R   L    ++    F D  +G+ + VL E   +  G   G S     V  
Sbjct: 345 QVDGNTKKRRSKELSVIEKKNSHEFLDNQIGKTLSVLFETKTELDGYKSGYSTNYLRVH- 403

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
              +  I +I  ++IT      L G+++
Sbjct: 404 TKDDVEINEIKDIKITQRIDDYLIGQII 431


>gi|146291706|ref|YP_001182130.1| ribosomal protein S12 methylthiotransferase [Shewanella
           putrefaciens CN-32]
 gi|238066624|sp|A4Y2Z8|RIMO_SHEPC RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|145563396|gb|ABP74331.1| MiaB-like tRNA modifying enzyme YliG [Shewanella putrefaciens
           CN-32]
          Length = 472

 Score =  366 bits (941), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 133/467 (28%), Positives = 211/467 (45%), Gaps = 36/467 (7%)

Query: 15  SQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIRE 74
           +   +      R    S GC  N+ DS R+       GYE  NS D+ADL+++NTC   +
Sbjct: 23  AASTNAVTTGNRIGFVSLGCPKNLVDSERILTQLRIDGYEVTNSYDNADLVIVNTCGFID 82

Query: 75  KAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYY 134
            A E+    +                  V+V GC+  A+  +I    P V  + GP +Y 
Sbjct: 83  AAVEESLDAVREALEENGK---------VIVTGCLG-AKENQIREVYPDVLEITGPHSYE 132

Query: 135 RLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCV 194
            + + + +               + F  L I   G        A+L I EGCD  CTFC+
Sbjct: 133 AVLKHVHKY--------VPKPEHNPFTSL-IPQTGVKLTPKHYAYLKISEGCDNRCTFCI 183

Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE---------KC 245
           +P  RG   SR    ++DEA++L+++GV EI ++ Q+ +A  GK   G          K 
Sbjct: 184 IPSLRGDLNSRPAGSILDEAKRLVESGVQEILVVSQDTSA-YGKDKSGRTDFWDGMPVKQ 242

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
             + L   L ++   VRL Y   +P       + A G   +++PYL +P+Q  S RILK 
Sbjct: 243 DITSLARQLGKMGAWVRLHYIYPYPWVDDLIPLMAEG---LILPYLDIPMQHASPRILKM 299

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           M R        + I R R + PD+ I S FIVGFPGET++DF+  +D + +    +   F
Sbjct: 300 MKRPGRVDRQLEAIQRWREICPDLVIRSTFIVGFPGETEEDFQILLDFLKEARLDRVGCF 359

Query: 366 KYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK 425
           KYS   G   + + E + E+VK +R     +   E         VG+ +++LI+   +E 
Sbjct: 360 KYSEVDGAVANTIAELISEDVKEDRYHRFMELQAEISAERLARFVGRTLDILIDDVDEEG 419

Query: 426 --GKLVGRSPWLQSVVLNSK--NHNIGDIIKVRITDVKISTLYGELV 468
             G+    +P +  +V  +       G +++ RIT      L+ E+V
Sbjct: 420 AIGRSFADAPEIDGMVFINGETELEPGMLVRARITHSDEHDLWAEVV 466


>gi|188589640|ref|YP_001920630.1| hypothetical protein CLH_1236 [Clostridium botulinum E3 str. Alaska
           E43]
 gi|238065362|sp|B2V4I1|RIMO_CLOBA RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|188499921|gb|ACD53057.1| conserved hypothetical protein [Clostridium botulinum E3 str.
           Alaska E43]
          Length = 446

 Score =  366 bits (941), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 129/454 (28%), Positives = 223/454 (49%), Gaps = 22/454 (4%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           +   +  + S GC  N  DS  +     S+ YE  N+  +AD+I++NTC   E A ++  
Sbjct: 1   MTKYKVGMVSLGCDKNRVDSEIILGKMSSE-YEITNNAKEADVIIVNTCGFIESAKQESI 59

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             +  +   KN+        L++  GC+ Q  G+E+    P +++++G   Y ++  ++ 
Sbjct: 60  DTILEMAEYKNNY----NCKLLIATGCLIQRYGDELKNLIPEIDIMLGVNDYNKIDRVIT 115

Query: 142 RARFGKRVVD--TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
               G +      +YS E+  E + I+       +  +A++ I EGC+ FCT+C++P  R
Sbjct: 116 EFIEGNKEASKLLNYSDENINEGIRIL-----TTQKESAYIRIAEGCNNFCTYCIIPKIR 170

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G   SR +  ++ EA  L   GV E+ L+ Q+     G  + G+K     LL  LS I+G
Sbjct: 171 GKFRSRRMENIISEATDLASKGVKELILIAQDTT-QYGSDIYGKK-NLHILLKELSNIEG 228

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           +  +R    +P  + D LI+     D ++ YL +P+Q  SD +LK M R+ +  +    I
Sbjct: 229 IKWIRVLYCYPEAIYDELIEEIAANDKVVKYLDIPIQHISDHVLKLMGRKTSKKDITDKI 288

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
           +++R+  P+I I + FIVGFP ET +DF   ++ + +    +   FKYS    TP S M 
Sbjct: 289 EKLRNKIPNIVIRTTFIVGFPQETQEDFEEILEFLQEYKLDKVGVFKYSREEDTPASKMD 348

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWL 435
            Q+DE++K ER   L     +   + N   V +  ++LIE++  +     GR    +P +
Sbjct: 349 GQIDESIKEEREEKLMLSQEKISNNINKLKVDKKYDILIEEY--DGEFYKGRNFEMAPDI 406

Query: 436 QSVVL--NSKNHNIGDIIKVRITDVKISTLYGEL 467
              V   + K   IG+ +KV+I       L G +
Sbjct: 407 DGNVFLESPKKLEIGEFVKVKIIKNMDYDLIGVV 440


>gi|78066551|ref|YP_369320.1| putative 2-methylthioadenine synthetase [Burkholderia sp. 383]
 gi|123756160|sp|Q39FU0|RIMO_BURS3 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|77967296|gb|ABB08676.1| SSU ribosomal protein S12P methylthiotransferase [Burkholderia sp.
           383]
          Length = 453

 Score =  366 bits (941), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 127/469 (27%), Positives = 208/469 (44%), Gaps = 48/469 (10%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC   + DS ++     ++GYE   + D ADL+V+NTC   ++A ++    +G
Sbjct: 6   KVGFVSLGCPKALVDSEQIITQLRAEGYEISGTYDGADLVVVNTCGFIDEAVQESLDAIG 65

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEE----ILRRSPIVNVVVGPQTYYRLPELLE 141
                            V+V GC+           I    P V  V GP     + + + 
Sbjct: 66  EALTENGK---------VIVTGCLGAKSSASGSNLIEEVHPKVLAVTGPHAVGEVMQAVH 116

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
                           D F  L    G     R   A+L I EGC+  CTFC++P  RG 
Sbjct: 117 SHLP---------KPHDPFTDLVPAAGIKLTPRHY-AYLKISEGCNHRCTFCIIPSMRGD 166

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYS 253
            +SR +++V+ EA  L  +GV E+ ++ Q+ +A+      R    +G+  K   +DL+ +
Sbjct: 167 LVSRPVAEVMLEAENLFKSGVKELLVISQDTSAYGVDVKYRTGFWNGKPIKTRMTDLVAA 226

Query: 254 LSEI----KGLVRLRYTTSHPRDMSDCLIKAHGDLD-VLMPYLHLPVQSGSDRILKSMNR 308
           L E+       VRL Y   +P       + A G     ++PYL +P Q     +LK M R
Sbjct: 227 LGELAAQYGAWVRLHYVYPYPSVDEVIPLMAEGPFKGHVLPYLDVPFQHAHPEVLKRMKR 286

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
              A +  + + + R + PD+ I S FI GFPGET++ F   +D + +    +   F YS
Sbjct: 287 PANAEKVLERVQKWREICPDLTIRSTFIAGFPGETEEQFETLLDFIREAELDRVGCFAYS 346

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL 428
           P  G   + +   + ++V+ ER     +   E   +     VG+ ++VLI++   E G  
Sbjct: 347 PVEGATANELDGALPDDVREERRARFMEVAEEVSANRIQRKVGKTLKVLIDEVSAEGG-- 404

Query: 429 VGRS----PWLQSVVLN------SKNHNIGDIIKVRITDVKISTLYGEL 467
           +GR+    P +  VV        SK + +GD + V+IT      L+GE+
Sbjct: 405 IGRTAADAPEIDGVVYVEPAAKASKRYKVGDFVSVKITGADGHDLWGEV 453


>gi|171319694|ref|ZP_02908785.1| MiaB-like tRNA modifying enzyme YliG [Burkholderia ambifaria MEX-5]
 gi|171095074|gb|EDT40085.1| MiaB-like tRNA modifying enzyme YliG [Burkholderia ambifaria MEX-5]
          Length = 453

 Score =  366 bits (941), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 127/469 (27%), Positives = 207/469 (44%), Gaps = 48/469 (10%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC   + DS ++     ++GYE   + D ADL+V+NTC   ++A ++    +G
Sbjct: 6   KVGFVSLGCPKALVDSEQIITQLRAEGYEISGTYDGADLVVVNTCGFIDEAVQESLDAIG 65

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEE----ILRRSPIVNVVVGPQTYYRLPELLE 141
                            V+V GC+           I    P V  V GP     + + + 
Sbjct: 66  EALTENGK---------VIVTGCLGAKSSASGSNLIEEVHPKVLAVTGPHAVGEVMQAVH 116

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
                           D F  L    G     R   A+L I EGC+  CTFC++P  RG 
Sbjct: 117 SHLP---------KPHDPFVDLVPAAGIKLTPRHY-AYLKISEGCNHRCTFCIIPSMRGD 166

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYS 253
            +SR +++V+ EA  L  +GV E+ ++ Q+ +A+      R    +G+  K   +DL+ +
Sbjct: 167 LVSRPVAEVMLEAENLFKSGVKELLVISQDTSAYGVDVKYRTGFWNGKPIKTRMTDLVAA 226

Query: 254 LSEI----KGLVRLRYTTSHPRDMSDCLIKAHGDLD-VLMPYLHLPVQSGSDRILKSMNR 308
           L E+       VRL Y   +P       + A G     ++PYL +P Q     +LK M R
Sbjct: 227 LGELAARYGAWVRLHYVYPYPSVDEVIPLMAEGPFKGHVLPYLDVPFQHAHPDVLKRMKR 286

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
              A +  + + + R + PD+ I S FI GFPGET++ F   +D + +    +   F YS
Sbjct: 287 PANAEKVLERVQKWRELCPDLTIRSTFIAGFPGETEEQFETLLDFIREAELDRVGCFAYS 346

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL 428
           P  G   + +   + ++V+ ER     +   E         VG+ ++VLI++   E G  
Sbjct: 347 PVEGATANELDGALPDDVREERRARFMEVAEEVSAKRIQRKVGKTLKVLIDEVSDEGG-- 404

Query: 429 VGRS----PWLQSVVLN------SKNHNIGDIIKVRITDVKISTLYGEL 467
           +GR+    P +  VV        SK + +GD + V+IT      L+GE+
Sbjct: 405 IGRTAADAPEIDGVVYVEPATKASKRYKVGDFVSVKITGADGHDLWGEV 453


>gi|115351773|ref|YP_773612.1| ribosomal protein S12 methylthiotransferase [Burkholderia ambifaria
           AMMD]
 gi|122323114|sp|Q0BEZ5|RIMO_BURCM RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|115281761|gb|ABI87278.1| SSU ribosomal protein S12P methylthiotransferase [Burkholderia
           ambifaria AMMD]
          Length = 453

 Score =  366 bits (941), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 127/471 (26%), Positives = 207/471 (43%), Gaps = 52/471 (11%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC   + DS ++     ++GYE   + D ADL+V+NTC   ++A ++    +G
Sbjct: 6   KVGFVSLGCPKALVDSEQIITQLRAEGYEISGTYDGADLVVVNTCGFIDEAVQESLDAIG 65

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEE----ILRRSPIVNVVVGPQTYYRLPELLE 141
                            V+V GC+           I    P V  V GP     + + + 
Sbjct: 66  EALTENGK---------VIVTGCLGAKSSASGSNLIEEVHPKVLAVTGPHAVGEVMQAVH 116

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
                           D F  L    G     R   A+L I EGC+  CTFC++P  RG 
Sbjct: 117 SHLP---------KPHDPFVDLVPAAGIKLTPRHY-AYLKISEGCNHRCTFCIIPSMRGD 166

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYS 253
            +SR +++V+ EA  L  +GV E+ ++ Q+ +A+      R    +G+  K   +DL+ +
Sbjct: 167 LVSRPVAEVMLEAENLFKSGVKELLVISQDTSAYGVDVKYRTGFWNGKPIKTRMTDLVAA 226

Query: 254 LSEI----KGLVRLRYTTSHPRDMSDCLIKAHGDLD---VLMPYLHLPVQSGSDRILKSM 306
           L E+       VRL Y   +P      +I    D      ++PYL +P Q     +LK M
Sbjct: 227 LGELAAQYGAWVRLHYVYPYPSVD--EVIPLMADGPFKGHVLPYLDVPFQHAHPEVLKRM 284

Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
            R   A +  + + + R + PD+ I S FI GFPGET++ F   +D + +    +   F 
Sbjct: 285 KRPANAEKVLERVQKWREICPDLTIRSTFIAGFPGETEEQFETLLDFIREAELDRVGCFA 344

Query: 367 YSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG 426
           YSP  G   + +   + ++V+ ER     +   E         VG+ ++VLI++   E G
Sbjct: 345 YSPVEGASANELDGALPDDVREERRARFMEVAEEVSAQRIQRKVGKTLKVLIDEVSAEGG 404

Query: 427 KLVGRS----PWLQSVVLN------SKNHNIGDIIKVRITDVKISTLYGEL 467
             +GR+    P +  VV        SK + +GD + V+IT      L+GE+
Sbjct: 405 --IGRTAADAPEIDGVVYVEPATKASKRYKVGDFVSVKITGADGHDLWGEV 453


>gi|332185732|ref|ZP_08387479.1| RNA modification enzyme, MiaB family protein [Sphingomonas sp. S17]
 gi|332014090|gb|EGI56148.1| RNA modification enzyme, MiaB family protein [Sphingomonas sp. S17]
          Length = 446

 Score =  366 bits (941), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 137/468 (29%), Positives = 215/468 (45%), Gaps = 40/468 (8%)

Query: 17  IVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA 76
           +  +   P R  + S GC  N+ DS R+     + GY+       AD++++NTC   + A
Sbjct: 1   MATKLPTPPRVGMVSLGCPKNLVDSERILTQLRADGYQMSPDYAGADVVLVNTCGFLDSA 60

Query: 77  AEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL 136
            E+    +G         IKE G   V+V GC+   E E I  R P V  + G   Y ++
Sbjct: 61  KEESLEAIGEA-------IKENG--RVIVTGCMG-KEAEAIRTRFPDVLAITGAHEYEQV 110

Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
            E +  A         D           I D G        ++L I EGC+  C+FC++P
Sbjct: 111 VEAVHAAAPANLSPYIDL----------IPDAGLKLTPRHYSYLKISEGCNHRCSFCIIP 160

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK---------CTF 247
             RG  +SR    ++ EA KL+  G  E+ ++ Q+ +A  G  +  E             
Sbjct: 161 SLRGDLVSRRPDAILREAEKLVAAGTRELLVISQDTSA-YGIDIRKEPRMWKGQEVVPHM 219

Query: 248 SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307
           +DL   L +I   VRL Y   +P       + A G   +++PYL +P Q  +  +L+ M 
Sbjct: 220 TDLARELGKIAPWVRLHYVYPYPHVDQVIPLMAEG---LVLPYLDIPFQHAAPSVLRRMK 276

Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           R     +  Q I + R + PDIAI S F+VGFPGET++DF   +D +D+    +  +F++
Sbjct: 277 RPGNDAKVLQRIHQWRDICPDIAIRSTFVVGFPGETEEDFEYLLDWLDEAQLDRVGAFRF 336

Query: 368 SPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK 427
            P  G   + + + V E VK ER   + +K      +   A VG+ + V+I+   +E G 
Sbjct: 337 EPVEGAAANALPDHVPEEVKEERYARIMEKTAAISAAKLAAKVGRTLPVIIDAVDEEGG- 395

Query: 428 LVGRS----PWLQSVVL--NSKNHNIGDIIKVRITDVKISTLYGELVV 469
             GRS    P +   V   ++ + ++GDI+KV I D     LYG  V 
Sbjct: 396 ATGRSQADAPEIDGEVFLRDAGHLSVGDIVKVEIEDADEHDLYGVPVT 443


>gi|149371257|ref|ZP_01890743.1| 2-methylthioadenine synthetase [unidentified eubacterium SCB49]
 gi|149355395|gb|EDM43954.1| 2-methylthioadenine synthetase [unidentified eubacterium SCB49]
          Length = 436

 Score =  366 bits (941), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 126/459 (27%), Positives = 216/459 (47%), Gaps = 33/459 (7%)

Query: 17  IVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA 76
           +  + +   +  V + GC  NVYDS  +     +   E V+  ++ +++V+NTC     A
Sbjct: 1   MRTKTLKKNKINVVTLGCSKNVYDSEVLMGQLKANNKEVVH-EEEGNVVVINTCGFIANA 59

Query: 77  AEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL 136
            E+  + +      K      G    V V GC+++    ++ +  P V+   G      L
Sbjct: 60  KEESVNTILEFVQKKEE----GIVDKVFVTGCLSERYKPDLQKEIPDVDQYFGT---TEL 112

Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
           P LL       + +  DY  E   ERL+     Y       A+L I EGCD+ C+FC +P
Sbjct: 113 PGLL-------KALGADYKHELIGERLTTTPKNY-------AYLKIAEGCDRPCSFCAIP 158

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256
             RG   S  +  +V EA KL  NGV E+ L+ Q++  + G  L  +K   ++LL  L++
Sbjct: 159 IMRGKHKSTPMEDLVIEAEKLAANGVKELILIAQDLT-YYGLDLY-KKRNLAELLEKLAK 216

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           ++G+  +R   + P      ++        +  Y+ +P+Q  +D ILKSM R  T  +  
Sbjct: 217 VEGIEWIRLHYAFPTGFPMDVLSLMHKEPKICNYIDIPLQHIADPILKSMRRGTTKAKTT 276

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
           +++   R+  P++AI +  IVG+PGET +D+    + V ++ + +   F YS    T   
Sbjct: 277 KLLQDFRAAVPEMAIRTTLIVGYPGETQEDYETLREWVREMRFERLGCFTYSHEENTHAY 336

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS---- 432
           N+ + V E VK ER   + +   +     N   +G    VLI++  KE    VGR+    
Sbjct: 337 NLEDDVPEAVKMERANEIMEIQSQISWELNQQKIGNEYRVLIDR--KEGAYYVGRTEFDS 394

Query: 433 PWLQS-VVLNSKN--HNIGDIIKVRITDVKISTLYGELV 468
           P + + V++N++      G+   V+IT  +   LY E+V
Sbjct: 395 PDVDNEVLINAEEGYLRTGEFFNVKITGAEDFDLYAEVV 433


>gi|281412050|ref|YP_003346129.1| MiaB-like tRNA modifying enzyme YliG [Thermotoga naphthophila
           RKU-10]
 gi|281373153|gb|ADA66715.1| MiaB-like tRNA modifying enzyme YliG [Thermotoga naphthophila
           RKU-10]
          Length = 430

 Score =  366 bits (941), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 132/446 (29%), Positives = 211/446 (47%), Gaps = 22/446 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R  +K  GC  N  D   +  +    G+E V  + DAD++VL+TC   E A  +    + 
Sbjct: 2   RVGIKVLGCPKNEADCEVLAGVLREGGHEIVFDVKDADVVVLDTCAFIEDAKRESIDEIF 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
              + K+          +VV GC+ Q   EE+ +  P V+  +G      +   LE+   
Sbjct: 62  SFVDAKDQY-----SYKLVVKGCLVQRYYEELKKEIPEVDQWIGVVDPEEIANALEKGTD 116

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                     V ++ E +       + +    A++ I +GCD+ CTFC +P  +G   SR
Sbjct: 117 ---------LVPNRPETVYRYRKRIDLEERPYAYVKISDGCDRGCTFCSIPSFKGSLRSR 167

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           S+  +  E   L+  G  EI L+ Q+  +  G  L   K    DLL  L+ + G   +R 
Sbjct: 168 SIEDITHEVEDLLKEGKKEIILVAQDTTS-YGIDLY-RKQALPDLLRRLNSLNGEFWIRV 225

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
              HP  +++ +I A  +LD ++ Y  +PVQ GSD+ILK M R  ++ E ++++  IR  
Sbjct: 226 MYLHPDHLTEEIISAMLELDKVVKYFDVPVQHGSDKILKLMGRTKSSEELKKMLSSIRER 285

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            PD  + +  IVGFPGET++DF      V++I + +  +F YS   GT   N+ E+VD  
Sbjct: 286 FPDAVLRTSIIVGFPGETEEDFEELKRFVEEIQFDKLGAFVYSDEEGTVAFNLKEKVDPE 345

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVLN 441
           V   R   L     E   S  D  +G+ ++ L+E  GKE   LVGR+    P +  VV  
Sbjct: 346 VAKRRQEELLLLQAEISNSRLDRFIGRKLKFLVE--GKEGKFLVGRTWTEAPEVDGVVFV 403

Query: 442 SKNHNIGDIIKVRITDVKISTLYGEL 467
                IGD ++V I +     ++G +
Sbjct: 404 RGKGKIGDFLEVVIKEHDEYDMWGSV 429


>gi|261856499|ref|YP_003263782.1| MiaB-like tRNA modifying enzyme YliG [Halothiobacillus neapolitanus
           c2]
 gi|261836968|gb|ACX96735.1| MiaB-like tRNA modifying enzyme YliG [Halothiobacillus neapolitanus
           c2]
          Length = 454

 Score =  366 bits (941), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 127/456 (27%), Positives = 210/456 (46%), Gaps = 28/456 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R    S GC   + DS R+     ++GY   +   DA+L+++NTC   + A ++    +G
Sbjct: 7   RVGFVSLGCPKALVDSERILTQLRAEGYALSSDYQDAELVIVNTCGFIDSATQESLDAIG 66

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAE-GEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
                            V+V GC+   + GE I +  P V  + GPQ Y  +   + +  
Sbjct: 67  EALTENGK---------VIVTGCLGARDEGELIRQTHPSVLAITGPQAYGEVMGAVHQYL 117

Query: 145 FGKRVVDTDYSVEDKFERLSI---VDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
             +     D     + +          G        A+L I EGC+  C+FC++P  RG 
Sbjct: 118 PPRHDPFVDLMPAPRVQTEVSDFESKVGIKLTPRHYAYLKISEGCNHRCSFCIIPSMRGD 177

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-----RGKGLDGEKC---TFSDLLYS 253
            +SR + +V+ EA+ L++ GV E+ ++ Q+ +A+           G K     F +L   
Sbjct: 178 LVSRPVGEVLTEAQNLVNAGVRELLVVSQDTSAYGLDTRYKLDFFGGKPVKTRFKELAAE 237

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
           L ++   +RL Y   +P       + A G   +++PYL +P Q  S RILK+M R  ++ 
Sbjct: 238 LGQMDAWIRLHYVYPYPHVDEVIPLMAEG---LVLPYLDIPFQHASPRILKAMKRPASSE 294

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
                I   R V PD+ + S FIVGFPGET+DDF+  +D +D+    +  +F YSP  G 
Sbjct: 295 NVLARIRTWRDVCPDLTLRSTFIVGFPGETEDDFQQLLDFLDEAQLDRVGAFTYSPVEGA 354

Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGR 431
             + + + V E++K ERL     K  E   +     VGQ + +LI++  +    G+  G 
Sbjct: 355 TANQLAKPVPESLKQERLERFMAKQAEISAAKLAVKVGQRMAILIDEVDESGAVGRGPGD 414

Query: 432 SPWLQSVVL--NSKNHNIGDIIKVRITDVKISTLYG 465
           +P +  VV   +  +   GD ++V IT      L+ 
Sbjct: 415 APEIDGVVFLPDVTDVRPGDFVEVEITAADEHDLWA 450


>gi|91215250|ref|ZP_01252222.1| putative Fe-S oxidoreductase [Psychroflexus torquis ATCC 700755]
 gi|91186855|gb|EAS73226.1| putative Fe-S oxidoreductase [Psychroflexus torquis ATCC 700755]
          Length = 440

 Score =  366 bits (941), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 123/460 (26%), Positives = 212/460 (46%), Gaps = 33/460 (7%)

Query: 17  IVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA 76
           +  + I   +  V + GC  N+YDS  +     + G E  +  +  D++V+NTC   + A
Sbjct: 1   MRTKSIKKNKINVVTLGCSKNIYDSEILMGQLKANGKEVAHETEG-DIVVINTCGFIDNA 59

Query: 77  AEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL 136
            E+  + +      K     +       V GC+++    ++ +  P V+   G      L
Sbjct: 60  KEESVNTILDFVQKKEKGEVKKVF----VTGCLSERYKPDLQKEIPDVDQYFGT---TEL 112

Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
           P LL       + +  DY  E   ER++     Y       AFL I EGCD+ C+FC +P
Sbjct: 113 PALL-------KALGADYKHELIGERITTTPKNY-------AFLKIAEGCDRPCSFCAIP 158

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256
             RGI  S  +  +V E++ L  NGV E+ L+ Q++  + G  L  +K   ++LL  L +
Sbjct: 159 LMRGIHRSTPIEDLVKESKSLAANGVKELILIAQDLT-YYGLDLY-KKRNLAELLRELVK 216

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           ++G+  +R   + P      ++    +   +  Y+ +P+Q  SD ILKSM R  T  +  
Sbjct: 217 VEGIEWIRLHYAFPTGFPVDVLDVIREEPKVCNYIDIPLQHISDHILKSMRRGTTHKKTT 276

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
            ++ + R   P + I +  IVG+PGET++DF      V+++ + +   F YS    T   
Sbjct: 277 DLLIKFRKEVPLMTIRTTLIVGYPGETEEDFEELKQWVEEMRFERLGCFTYSHEENTHAY 336

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS---- 432
           N+ + V E VK +R   + +   +     N   +G+  + +I++  KE    VGR+    
Sbjct: 337 NLEDDVPEEVKMQRANEIMEIQSQISWELNQQKIGKTFKCVIDR--KEGNYFVGRTEYDS 394

Query: 433 PWLQSVVLNSKN---HNIGDIIKVRITDVKISTLYGELVV 469
           P + + VL          GD   ++IT+     LYGE V+
Sbjct: 395 PDVDNEVLIDSKLHYLKTGDFAHIKITEAADFDLYGEPVL 434


>gi|160873660|ref|YP_001552976.1| ribosomal protein S12 methylthiotransferase [Shewanella baltica
           OS195]
 gi|238066598|sp|A9KZF7|RIMO_SHEB9 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|160859182|gb|ABX47716.1| MiaB-like tRNA modifying enzyme YliG [Shewanella baltica OS195]
 gi|315265891|gb|ADT92744.1| MiaB-like tRNA modifying enzyme YliG [Shewanella baltica OS678]
          Length = 472

 Score =  366 bits (941), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 133/467 (28%), Positives = 210/467 (44%), Gaps = 36/467 (7%)

Query: 15  SQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIRE 74
           +   +      R    S GC  N+ DS R+       GYE  NS D+ADL+++NTC   +
Sbjct: 23  AASTNAVTTGNRIGFVSLGCPKNLVDSERILTQLRIDGYEVTNSYDNADLVIVNTCGFID 82

Query: 75  KAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYY 134
            A E+    +                  V+V GC+  A+  +I    P V  + GP +Y 
Sbjct: 83  AAVEESLDAVREALEENGK---------VIVTGCLG-AKENQIREVHPDVLEITGPHSYE 132

Query: 135 RLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCV 194
            + + + +               + F  L I   G        A+L I EGCD  CTFC+
Sbjct: 133 AVLKHVHKY--------VPKPEHNPFTSL-IPQTGVKLTPKHYAYLKISEGCDNRCTFCI 183

Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE---------KC 245
           +P  RG   SR    ++DEA++L+++GV EI ++ Q+ +A  GK   G          K 
Sbjct: 184 IPSLRGDLDSRPAGSILDEAKRLVESGVQEILVVSQDTSA-YGKDKGGRTDFWNGMPVKQ 242

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
             + L   L ++   VRL Y   +P       + A G   +++PYL +P+Q  S RILK 
Sbjct: 243 DITSLARQLGKMGAWVRLHYIYPYPWVDDLIPLMAEG---LILPYLDIPMQHASPRILKM 299

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           M R        + I R R + PD+ I S FIVGFPGET++DF+  +D + +    +   F
Sbjct: 300 MKRPGRVDRQLEAIQRWREICPDLVIRSTFIVGFPGETEEDFQILLDFLKEARLDRVGCF 359

Query: 366 KYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK 425
           KYS   G   + + E + E VK +R     +   E         VG+ +++LI+   +E 
Sbjct: 360 KYSEVDGAVANTIAELISEEVKEDRYHRFMEVQAEISAERLARFVGRTLDILIDDVDEEG 419

Query: 426 --GKLVGRSPWLQSVVLNSK--NHNIGDIIKVRITDVKISTLYGELV 468
             G+    +P +  +V  +       G +++ RIT      L+ E+V
Sbjct: 420 AIGRSFADAPEIDGMVFINGETELEPGMLVRARITHSDEHDLWAEVV 466


>gi|251780327|ref|ZP_04823247.1| conserved hypothetical protein [Clostridium botulinum E1 str. 'BoNT
           E Beluga']
 gi|243084642|gb|EES50532.1| conserved hypothetical protein [Clostridium botulinum E1 str. 'BoNT
           E Beluga']
          Length = 434

 Score =  366 bits (941), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 139/446 (31%), Positives = 233/446 (52%), Gaps = 18/446 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    + GC++N Y++  M + F  +GY   +  D AD+ V+NTC +     +K    + 
Sbjct: 2   KVAFATLGCRVNQYETEAMTEKFIREGYSVTDFDDFADVYVINTCTVTNMGDKKSRQIIS 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           + R       +   + ++ V GC +Q   EE+  +   V+VV+G +    +   + +AR 
Sbjct: 62  KAR-------RTNSNAIIAVVGCYSQIAPEEV-SKIEGVDVVLGTRNKGDIVYFVNKARD 113

Query: 146 GK--RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            K  +V   +     +FE L+I +     +    AFL IQ+GC++FCTFC++PY RG   
Sbjct: 114 EKAIQVSVNEVLKNKEFEELNIEEY----QDKTRAFLKIQDGCNRFCTFCLIPYARGATC 169

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           S+   +V++E +KL ++G  E+ L G +  A  G  L G   T   LL  + +I G+ R+
Sbjct: 170 SKKPEKVIEEVKKLAEHGFKEVILSGIHT-ASYGVDL-GTDVTLISLLEDIEKIDGIDRV 227

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R  +  P   +D +I    ++  L P+ HL +QSGSD  LK MNRR+TA EY + +  +R
Sbjct: 228 RIGSIEPAFFTDEVINKIKNMKKLCPHFHLSLQSGSDATLKRMNRRYTADEYAKTVQTLR 287

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
               D++I++D IVGFPGET+D+F  T + + K+   +   FKYSPR GT  + M  Q+D
Sbjct: 288 DNIQDVSITTDLIVGFPGETEDEFNETYEYLKKLKLTKVHLFKYSPRKGTKAAEMPNQID 347

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKH-GKEKGKLVGRSPWLQSVVL-N 441
             +K +R   L +  +E +V F    VG+ ++VLIE+    + G   G +       + +
Sbjct: 348 GTIKDKRSKILSELNKENEVDFVKKLVGREMDVLIERECSNKPGIFEGYTKNYVKAEISD 407

Query: 442 SKNHNIGDIIKVRITDVKISTLYGEL 467
           +    IG I+   I     + + G++
Sbjct: 408 ASKEMIGKIMDCNIETYDENYIVGKI 433


>gi|187736112|ref|YP_001878224.1| MiaB-like tRNA modifying enzyme YliG [Akkermansia muciniphila ATCC
           BAA-835]
 gi|238065282|sp|B2ULZ9|RIMO_AKKM8 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|187426164|gb|ACD05443.1| MiaB-like tRNA modifying enzyme YliG [Akkermansia muciniphila ATCC
           BAA-835]
          Length = 452

 Score =  366 bits (941), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 122/456 (26%), Positives = 199/456 (43%), Gaps = 16/456 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           +P    + S GC  N+ DS  M       G       + AD++V+NTC   ++A ++   
Sbjct: 1   MPLTVGLISLGCPKNLVDSEIMIGHLQKAGMTMTPEPELADVMVVNTCAFIDQAKQEAID 60

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +  I   + +        L+V AGC++Q   +E+    P V+  +GP    +LPE++ +
Sbjct: 61  AILDIVRARENGAYPENQKLIV-AGCLSQRFRKELPALLPEVDAFIGPDQITKLPEIITQ 119

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
               + + D ++               Y      TA++ I EGC+  C +C++P  RG  
Sbjct: 120 VM-DRTIQDRNFIEGKCRYVPDWNTPRYRLTPPHTAYIKIAEGCNHGCAYCIIPMIRGRH 178

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC------------TFSDL 250
            SRS   VV EA  LI +GV EI L+ Q++  +        +             + + L
Sbjct: 179 RSRSQQDVVREAETLIRSGVKEICLIAQDITYYGMDKWTDARPNRRSAVDSSRGESLASL 238

Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
           L +L+ I+G   +R   +HP   SD L  A  +   +  Y+ +P+Q  SD +L +M R  
Sbjct: 239 LRALNAIEGEFWIRLLYTHPAHWSDELTAAIAECPKVARYVDIPLQHISDNMLDAMQRVT 298

Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370
                R ++  IR   P IAI + FI GFPGET+DD +  M+ +++  + +A  F +S  
Sbjct: 299 DGNYIRTLLRNIRKAVPGIAIRTTFITGFPGETEDDHQELMEFIEEFRFERAGIFTFSRE 358

Query: 371 LGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG 430
            GT    M  QV    KA R       L           +G+ I VL++  G  + +   
Sbjct: 359 EGTKAYKMPNQVHHRTKARRYNEATLLLARLASETGQEQIGRQIRVLVDAPGVARTEW-- 416

Query: 431 RSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGE 466
            +P +   V       +G    V +TD     L  E
Sbjct: 417 DAPDIDGTVSVPLTLPVGQFATVTVTDAVAYELTAE 452


>gi|161524661|ref|YP_001579673.1| ribosomal protein S12 methylthiotransferase [Burkholderia
           multivorans ATCC 17616]
 gi|160342090|gb|ABX15176.1| MiaB-like tRNA modifying enzyme YliG [Burkholderia multivorans ATCC
           17616]
          Length = 468

 Score =  366 bits (940), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 127/479 (26%), Positives = 208/479 (43%), Gaps = 48/479 (10%)

Query: 16  QIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREK 75
               Q     +    S GC   + DS ++     ++GYE   + D ADL+V+NTC   ++
Sbjct: 11  APTLQMSQSPKVGFVSLGCPKALVDSEQIITQLRAEGYEISGTYDGADLVVVNTCGFIDE 70

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEE----ILRRSPIVNVVVGPQ 131
           A ++    +G                 V+V GC+   +       I    P V  V GP 
Sbjct: 71  AVQESLDAIGEALTENGK---------VIVTGCLGAKKSASGSGLIEEVHPKVLAVTGPH 121

Query: 132 TYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCT 191
               + + +                 D F  L +   G        A+L I EGC+  CT
Sbjct: 122 AVGEVMQAVHSHLP---------KPHDPFVDL-VPPAGIKLTPRHYAYLKISEGCNHRCT 171

Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE-- 243
           FC++P  RG  +SR +++V+ EA  L  +GV E+ ++ Q+ +A+      R    +G+  
Sbjct: 172 FCIIPSMRGDLVSRPVAEVMLEAENLFKSGVKELLVISQDTSAYGVDVKYRTGFWNGKPI 231

Query: 244 KCTFSDLLYSLSEI----KGLVRLRYTTSHPRDMSDCLIKAHGDLD-VLMPYLHLPVQSG 298
           K   +DL+ +L E+       VRL Y   +P       + A G     ++PYL +P Q  
Sbjct: 232 KTRMTDLVAALGELAAQYGAWVRLHYVYPYPSVDEVIPLMAEGPFKGHVLPYLDVPFQHA 291

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
              +LK M R   A +  + + + R + PD+ I S FI GFPGET+  F   +D + +  
Sbjct: 292 HPDVLKRMKRPANAEKVLERVQKWREICPDLTIRSTFIAGFPGETEAQFETLLDFIREAE 351

Query: 359 YAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI 418
             +   F YSP  G   + +   + ++V+ ER     +   E         VG+ ++VLI
Sbjct: 352 LDRVGCFAYSPVEGASANELDGALPDDVREERRARFMEVAEEVSARRIARKVGKTLKVLI 411

Query: 419 EKHGKEKGKLVGRS----PWLQSVVLN------SKNHNIGDIIKVRITDVKISTLYGEL 467
           ++   E G  +GR+    P +  VV        SK + +GD + V+IT      L+GE+
Sbjct: 412 DEVSDEGG--IGRTAADAPEIDGVVYVEPATKASKRYKVGDFVSVKITGADGHDLWGEV 468


>gi|6841556|gb|AAF29131.1|AF161516_1 HSPC167 [Homo sapiens]
          Length = 586

 Score =  366 bits (940), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 147/501 (29%), Positives = 237/501 (47%), Gaps = 66/501 (13%)

Query: 17  IVDQCI-VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREK 75
           ++D+ +   ++ ++++YGCQMNV D+     +    GY R +++ +AD+I+L TC IREK
Sbjct: 91  MMDELLGRQRKVYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCSIREK 150

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135
           A + +++ L +++ LK  R +    L + + GC+A+   EEIL R  +V+++ GP  Y  
Sbjct: 151 AEQTIWNRLHQLKALKTRRPRSRVPLRIGILGCMAERLKEEILNREKMVDILAGPDAYRD 210

Query: 136 LPE-LLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCV 194
           LP   L  +R  K                    G        +AF++I  GCD  C++C+
Sbjct: 211 LPGCWLMLSRASKLPTCCSLWTRPMLMSCQSRQG----ASATSAFVSIMRGCDNMCSYCI 266

Query: 195 V------------PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG----- 237
           V            P++RG E             +    G+ E+TLLGQNVN++R      
Sbjct: 267 VLSPGAGRGVGLLPHSRGSE-------------EAFLAGLKEVTLLGQNVNSFRDNSEVQ 313

Query: 238 ----------KGLDGEKCT------FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAH 281
                     +G      T      F+ LL  +S +   +R+R+T+ HP+D  D +++  
Sbjct: 314 FNSAVPTNLSRGFTTNYKTKQGGLRFAHLLDQVSRVDPEMRIRFTSPHPKDFPDEVLQLI 373

Query: 282 GDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPG 341
            + D +   +HLP QSGS R+L++M R ++   Y +++  IR   P +++SSDFI GF G
Sbjct: 374 HERDNICKQIHLPAQSGSSRVLEAMRRGYSREAYVELVHHIRESIPGVSLSSDFIAGFCG 433

Query: 342 ETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLRE 400
           ET++D   T+ L+ ++ Y   F F YS R  T     + + V E VK  RL  L    RE
Sbjct: 434 ETEEDHVQTVSLLREVQYNMGFLFAYSMRQKTRAYHRLKDDVPEEVKLRRLEELITIFRE 493

Query: 401 QQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVLNSKN------------HNI 447
           +    N   VG    VL+E   K     L GR+     V+                    
Sbjct: 494 EASKANQTSVGCTQLVLVEGLSKRSATDLCGRNDGNLKVIFPDAEMEDVNNPGLRVRAQP 553

Query: 448 GDIIKVRITDVKISTLYGELV 468
           GD + V+IT     TL G ++
Sbjct: 554 GDYVLVKITSASSQTLRGHVL 574


>gi|170723177|ref|YP_001750865.1| ribosomal protein S12 methylthiotransferase [Pseudomonas putida
           W619]
 gi|238066575|sp|B1JD88|RIMO_PSEPW RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|169761180|gb|ACA74496.1| MiaB-like tRNA modifying enzyme YliG [Pseudomonas putida W619]
          Length = 443

 Score =  366 bits (940), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 131/464 (28%), Positives = 215/464 (46%), Gaps = 34/464 (7%)

Query: 18  VDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA 77
           +       +    S GC   + DS R+      +GYE V + +DAD++V+NTC   + A 
Sbjct: 1   MSTTPATPKVGFVSLGCPKALVDSERILTQLRMEGYEVVPTYEDADVVVVNTCGFIDSAK 60

Query: 78  EKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLP 137
            +    +G         IKE G   V+V GC+   EG  I    P V  V GPQ Y ++ 
Sbjct: 61  AESLEVIGEA-------IKENG--KVIVTGCMGVEEGS-IRDVHPSVLSVTGPQQYEQVV 110

Query: 138 ELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197
             +      ++  +    +        +   G        A+L I EGC+  C+FC++P 
Sbjct: 111 NAVHEVVPPRQDHNPLIDL--------VPPQGVKLTPRHYAYLKISEGCNHSCSFCIIPS 162

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSD 249
            RG  +SR + +V+ EA +L+  GV EI ++ Q+ +A+      +    +G   K    +
Sbjct: 163 MRGKLVSRPVGEVLSEAERLVKAGVKEILVISQDTSAYGVDVKYKTDFWNGRPVKTRMLE 222

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
           L  +LS +   VRL Y   +P       + A G    ++PYL +P Q  S ++LKSM R 
Sbjct: 223 LCEALSSLGAWVRLHYVYPYPNVDDVIPLMAAG---KILPYLDIPFQHASPKVLKSMKRP 279

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369
                    I   R   P++ I S FIVGFPGET++DF+  +D + +    +   F+YSP
Sbjct: 280 AFEDRTLARIKNWREQCPELVIRSTFIVGFPGETEEDFQYLLDWLTEAQLDRVGCFQYSP 339

Query: 370 RLGTPGSNM-LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--G 426
             G P +++ LE+V ++VK ER        +    +     +G+ IEVLI++  ++   G
Sbjct: 340 VEGAPANDLGLEEVPDDVKQERWDRFMAHQQAISSARLQLRIGKEIEVLIDEVEEQGSVG 399

Query: 427 KLVGRSPWLQSVVLNSKNH--NIGDIIKVRITDVKISTLYGELV 468
           +    +P +   V    +H    GD ++ R+ D     ++ E V
Sbjct: 400 RSFFDAPEIDGSVFIDGDHGLKPGDKVRCRVVDADEYDMWAEPV 443


>gi|134295817|ref|YP_001119552.1| ribosomal protein S12 methylthiotransferase [Burkholderia
           vietnamiensis G4]
 gi|238065312|sp|A4JEL4|RIMO_BURVG RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|134138974|gb|ABO54717.1| SSU ribosomal protein S12P methylthiotransferase [Burkholderia
           vietnamiensis G4]
          Length = 453

 Score =  366 bits (940), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 128/469 (27%), Positives = 207/469 (44%), Gaps = 48/469 (10%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC   + DS ++     ++GYE   + D ADL+V+NTC   ++A ++    +G
Sbjct: 6   KVGFVSLGCPKALVDSEQIITQLRAEGYEISGTYDGADLVVVNTCGFIDEAVQESLDAIG 65

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEE----ILRRSPIVNVVVGPQTYYRLPELLE 141
                            V+V GC+           I    P V  V GP     + + + 
Sbjct: 66  EALTENGK---------VIVTGCLGAKSSASGSNLIEEVHPKVLAVTGPHAVGEVMQAVH 116

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
                           D F  L    G     R   A+L I EGC+  CTFC++P  RG 
Sbjct: 117 SHLP---------KPHDPFVDLVPAAGIKLTPRHY-AYLKISEGCNHRCTFCIIPSMRGD 166

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYS 253
            +SR +++V+ EA  L  +GV E+ ++ Q+ +A+      R    +G+  K   +DL+ +
Sbjct: 167 LVSRPVAEVMLEAENLFKSGVKELLVISQDTSAYGVDVKYRTGFWNGKPIKTRMTDLVAA 226

Query: 254 LSEI----KGLVRLRYTTSHPRDMSDCLIKAHGDLD-VLMPYLHLPVQSGSDRILKSMNR 308
           L E+       VRL Y   +P       + A G     ++PYL +P Q     +LK M R
Sbjct: 227 LGELAAQYGAWVRLHYVYPYPSVDEVIPLMAEGPFKGHVLPYLDVPFQHAHPDVLKRMKR 286

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
              A +  + + + R + PD+ I S FI GFPGET+  F   +D + +    +   F YS
Sbjct: 287 PANAEKVLERVQKWREICPDLTIRSTFIAGFPGETEAQFETLLDFIREAELDRVGCFAYS 346

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL 428
           P  G   + +   + ++V+ ER     +   E         VG+ ++VLI++ G E G  
Sbjct: 347 PVEGATANELDGALPDDVREERRARFMEVAEEVSARRMQRKVGKTLKVLIDEVGNEGG-- 404

Query: 429 VGRS----PWLQSVVLN------SKNHNIGDIIKVRITDVKISTLYGEL 467
           +GR+    P +  VV        SK + +GD + V+IT      L+GE+
Sbjct: 405 IGRTAADAPEIDGVVYVEPAAKASKRYKVGDFVSVKITGADGHDLWGEV 453


>gi|152999067|ref|YP_001364748.1| ribosomal protein S12 methylthiotransferase [Shewanella baltica
           OS185]
 gi|238066623|sp|A6WIP6|RIMO_SHEB8 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|151363685|gb|ABS06685.1| MiaB-like tRNA modifying enzyme YliG [Shewanella baltica OS185]
          Length = 472

 Score =  366 bits (940), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 133/467 (28%), Positives = 211/467 (45%), Gaps = 36/467 (7%)

Query: 15  SQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIRE 74
           +   +      R    S GC  N+ DS R+       GYE  NS D+ADL+++NTC   +
Sbjct: 23  AASTNAVTTGNRIGFVSLGCPKNLVDSERILTQLRIDGYEVTNSYDNADLVIVNTCGFID 82

Query: 75  KAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYY 134
            A E+    +                  V+V GC+  A+  +I    P V  + GP +Y 
Sbjct: 83  AAVEESLDAVREALEENGK---------VIVTGCLG-AKENQIREVHPDVLEITGPHSYE 132

Query: 135 RLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCV 194
            + + + +               + F  L I   G        A+L I EGCD  CTFC+
Sbjct: 133 AVLKHVHKY--------VPKPEHNPFTSL-IPQTGVKLTPKHYAYLKISEGCDNRCTFCI 183

Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE---------KC 245
           +P  RG   SR    ++DEA++L+++GV EI ++ Q+ +A  GK   G          K 
Sbjct: 184 IPSLRGDLDSRPAGSILDEAKRLVESGVQEILVVSQDTSA-YGKDKGGRTDFWNGMPVKQ 242

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
             + L   L ++   VRL Y   +P       + A G   +++PYL +P+Q  S RILK 
Sbjct: 243 DITSLARQLGKMGAWVRLHYIYPYPWVDDLIPLMAEG---LILPYLDIPMQHASPRILKM 299

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           M R        + I R R + PD+ I S FIVGFPGET++DF+  +D + +    +   F
Sbjct: 300 MKRPGRVDRQLEAIQRWREICPDLVIRSTFIVGFPGETEEDFQILLDFLKEARLDRVGCF 359

Query: 366 KYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK 425
           KYS   G   + + E + E+VK +R     +   E         VG+ +++LI+   +E 
Sbjct: 360 KYSEVDGAVANTIAELISEDVKEDRYHRFMEVQAEISAERLARFVGRTLDILIDDVDEEG 419

Query: 426 --GKLVGRSPWLQSVVLNSK--NHNIGDIIKVRITDVKISTLYGELV 468
             G+    +P +  +V  +       G +++ RIT      L+ E+V
Sbjct: 420 AIGRSFADAPEIDGMVFINGETELEPGMLVRARITHSDEHDLWAEVV 466


>gi|224024935|ref|ZP_03643301.1| hypothetical protein BACCOPRO_01666 [Bacteroides coprophilus DSM
           18228]
 gi|224018171|gb|EEF76169.1| hypothetical protein BACCOPRO_01666 [Bacteroides coprophilus DSM
           18228]
          Length = 432

 Score =  366 bits (940), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 112/457 (24%), Positives = 205/457 (44%), Gaps = 35/457 (7%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEK 79
           +      + + GC  N+ DS ++     + GY+  +  D    ++ V+NTC     A E+
Sbjct: 1   MKKNTIDIITLGCSKNLVDSEKLMKQLEANGYKVTHDSDHPQGEIAVINTCGFIGDAKEE 60

Query: 80  VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL 139
             + +      K      G    + V GC+++   +E+    P V+   G   +  L   
Sbjct: 61  SINMILEFCQAKEE----GRLKKLFVMGCLSERYLQELTGEIPQVDKFYGKFNWNDLLND 116

Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           L ++   +  ++                  +       A+L I EGCD+ C++C +P   
Sbjct: 117 LGKSYHSEFAIE-----------------RHLTTPSHYAYLKISEGCDRKCSYCAIPIIT 159

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G  +SR + +++DE R L+  GV E  ++ Q +  + G  L  +K    +L+  ++EI G
Sbjct: 160 GRHVSRPMEEILDEVRLLVSQGVKEFQVIAQELT-YYGVDLY-KKQMLPELIEKMAEIPG 217

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           +  +R   ++P    + L +   + D +  Y+ + +Q  SD +L+ M R  +  E  ++I
Sbjct: 218 VEWIRLHYAYPAAFPEDLFRVMREHDNVCKYMDIALQHISDNMLQKMRRHVSKAETYRLI 277

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NM 378
           +R R   P I + +  +VG PGET++DF    + V K  + +  +F YS   GT  + N 
Sbjct: 278 ERFREEVPGIHLRTTLMVGHPGETEEDFEELKEFVRKARFDRMGAFAYSEEEGTYSAQNY 337

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PW 434
            + + E VK  RL  L    +E       A +G+  +V+I++  KE    +GR+    P 
Sbjct: 338 SDDIPEEVKHRRLDELMAVQQEISADLTHAKIGKEFKVIIDR--KEGDYFIGRTEFDSPE 395

Query: 435 LQSVVL---NSKNHNIGDIIKVRITDVKISTLYGELV 468
           +   VL     +N  IG   +V++ D     LY  L+
Sbjct: 396 VDPEVLIKDEGQNLVIGSFYQVKVYDADDFDLYATLI 432


>gi|30248915|ref|NP_840985.1| hypothetical protein NE0911 [Nitrosomonas europaea ATCC 19718]
 gi|75540795|sp|Q82VY8|RIMO_NITEU RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|30138532|emb|CAD84822.1| Uncharacterized protein family UPF0004 [Nitrosomonas europaea ATCC
           19718]
          Length = 447

 Score =  366 bits (940), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 132/469 (28%), Positives = 208/469 (44%), Gaps = 39/469 (8%)

Query: 13  MVSQIVDQCIVPQ--RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC 70
           M S        P+  R    S GC     DS R+     ++GY    S  DADL+V+NTC
Sbjct: 1   MTSASSATIQPPRIPRVGFVSLGCPKATVDSERILTCLRAEGYLISPSYADADLVVVNTC 60

Query: 71  HIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGP 130
              + A  +    +G                 V+V GC+  A+ + I +  P V  V GP
Sbjct: 61  GFIDSAVAESLETIGEALTENGK---------VIVTGCLG-AKEDVIRQAHPSVLAVTGP 110

Query: 131 QTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190
           Q    + + + R               D +  L +   G        A+L I EGC+  C
Sbjct: 111 QATEEVMQAIHRHLP---------KPHDPYLDL-VPPQGIKLTPKHYAYLKISEGCNHRC 160

Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE------- 243
           TFC++P  RG  +SR +  V+ EA+ L+D GV E+ ++ Q+ +A  G  +          
Sbjct: 161 TFCIIPSMRGDLVSRPVGNVLQEAQNLVDAGVRELLIISQDTSA-YGVDIKYRTGFWQGR 219

Query: 244 --KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
             +   ++L  +L E+   +RL Y   +P       + A G    L+PYL +P Q GS R
Sbjct: 220 PIRSRITELARALGELGIWIRLHYVYPYPHVDELIPLMAEG---KLLPYLDIPFQHGSKR 276

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
           ILK M R   +      I + R + PDIA+ S FIVGFPGET+ +F   +  +++    +
Sbjct: 277 ILKLMKRPANSENVLARIRQWRDICPDIALRSTFIVGFPGETEQEFEELLAFLEEAQLDR 336

Query: 362 AFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKH 421
             +F YSP  G   + + + V   ++ ERL  L +   E          G+I++VL++  
Sbjct: 337 VGAFAYSPVKGAAANALPDPVPSEIQQERLARLMQWQEEISKKRLAGKKGRILKVLVDTV 396

Query: 422 GKEK--GKLVGRSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGE 466
            +     +    +P +  VV    + +I  GD + VRIT   I  L+ +
Sbjct: 397 DENGVIARSYADAPEIDGVVYIEPDFSIKPGDWVDVRITRTGIHDLWAK 445


>gi|221633225|ref|YP_002522450.1| MiaB-like tRNA modifying protein YliG [Thermomicrobium roseum DSM
           5159]
 gi|221155400|gb|ACM04527.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Thermomicrobium
           roseum DSM 5159]
          Length = 470

 Score =  366 bits (940), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 119/458 (25%), Positives = 207/458 (45%), Gaps = 28/458 (6%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P RF + + GC  N  DS  M     ++G +  +  D+A ++V+NTC     A  +  + 
Sbjct: 4   PLRFHIVTLGCSKNQVDSEGMAQRLIARGLQPTDEPDEAAVLVVNTCGFLAAARAESRAA 63

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +  +        +     +++ AGC+   +        P ++  V    + R+  ++   
Sbjct: 64  IEELA------ARRRPGQIIIAAGCMVSLDQHR-AELPPGLDAYVPTHDWNRIDAVVAD- 115

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             G  +     S  D      +        R  +A++ I +GCD  C+FC +P  +G + 
Sbjct: 116 LLGLPIPSVLESTRD------LPSFPRLPVRRPSAYVKIADGCDHRCSFCAIPLIKGNQR 169

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE-IKGLVR 262
           S+  S++V E R+L++ G  E+ L+ Q+     G  L G +    DLL S++E +  L  
Sbjct: 170 SKRPSEIVREIRELVNAGTKEVILVAQDT-IRYGADL-GLRNGLPDLLRSIAEHVPDLPW 227

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LR    +P  +   LI    +L   +PYL +P+Q     +L+ M R      YR++I   
Sbjct: 228 LRLLYLYPSPLLFRLIDTMAELKPCVPYLDIPLQHADPVLLRRMMRPSDPDFYRRLIAYA 287

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R   PD+A+ + FIVGFPGETD+ FR   D V ++ +     F YS    TP + M + V
Sbjct: 288 RERLPDVALRTTFIVGFPGETDEQFRRLYDFVAEMEFDHVGVFVYSREQPTPSARMEDPV 347

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-----------GKLVGR 431
              V  ER   L +  +    + N   VG+I+ +L+E  G+ +           G+    
Sbjct: 348 PPEVAEERRAALMELQQRISWARNKTLVGKILPILVEGTGEVEDERGNRAPLSAGRAARH 407

Query: 432 SPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
           +P +  +V   +   +G+ + VRIT  +   L+ E + 
Sbjct: 408 APEVDGLVFVPEELPLGEFVTVRITQAEPYDLWAEPLA 445


>gi|189350582|ref|YP_001946210.1| ribosomal protein S12 methylthiotransferase [Burkholderia
           multivorans ATCC 17616]
 gi|238065380|sp|A9AH21|RIMO_BURM1 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|189334604|dbj|BAG43674.1| putative 2-methylthioadenine synthetase [Burkholderia multivorans
           ATCC 17616]
          Length = 453

 Score =  366 bits (940), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 126/469 (26%), Positives = 207/469 (44%), Gaps = 48/469 (10%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC   + DS ++     ++GYE   + D ADL+V+NTC   ++A ++    +G
Sbjct: 6   KVGFVSLGCPKALVDSEQIITQLRAEGYEISGTYDGADLVVVNTCGFIDEAVQESLDAIG 65

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEE----ILRRSPIVNVVVGPQTYYRLPELLE 141
                            V+V GC+   +       I    P V  V GP     + + + 
Sbjct: 66  EALTENGK---------VIVTGCLGAKKSASGSGLIEEVHPKVLAVTGPHAVGEVMQAVH 116

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
                           D F  L +   G        A+L I EGC+  CTFC++P  RG 
Sbjct: 117 SHLP---------KPHDPFVDL-VPPAGIKLTPRHYAYLKISEGCNHRCTFCIIPSMRGD 166

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYS 253
            +SR +++V+ EA  L  +GV E+ ++ Q+ +A+      R    +G+  K   +DL+ +
Sbjct: 167 LVSRPVAEVMLEAENLFKSGVKELLVISQDTSAYGVDVKYRTGFWNGKPIKTRMTDLVAA 226

Query: 254 LSEI----KGLVRLRYTTSHPRDMSDCLIKAHGDLD-VLMPYLHLPVQSGSDRILKSMNR 308
           L E+       VRL Y   +P       + A G     ++PYL +P Q     +LK M R
Sbjct: 227 LGELAAQYGAWVRLHYVYPYPSVDEVIPLMAEGPFKGHVLPYLDVPFQHAHPDVLKRMKR 286

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
              A +  + + + R + PD+ I S FI GFPGET+  F   +D + +    +   F YS
Sbjct: 287 PANAEKVLERVQKWREICPDLTIRSTFIAGFPGETEAQFETLLDFIREAELDRVGCFAYS 346

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL 428
           P  G   + +   + ++V+ ER     +   E         VG+ ++VLI++   E G  
Sbjct: 347 PVEGASANELDGALPDDVREERRARFMEVAEEVSARRIARKVGKTLKVLIDEVSDEGG-- 404

Query: 429 VGRS----PWLQSVVLN------SKNHNIGDIIKVRITDVKISTLYGEL 467
           +GR+    P +  VV        SK + +GD + V+IT      L+GE+
Sbjct: 405 IGRTAADAPEIDGVVYVEPATKASKRYKVGDFVSVKITGADGHDLWGEV 453


>gi|251780611|ref|ZP_04823531.1| conserved hypothetical protein [Clostridium botulinum E1 str. 'BoNT
           E Beluga']
 gi|243084926|gb|EES50816.1| conserved hypothetical protein [Clostridium botulinum E1 str. 'BoNT
           E Beluga']
          Length = 446

 Score =  366 bits (940), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 129/454 (28%), Positives = 221/454 (48%), Gaps = 22/454 (4%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           +   +  + S GC  N  DS  +     S+ YE  N+  +AD+I++NTC   E A ++  
Sbjct: 1   MTKYKVGMVSLGCDKNRVDSEIILGKMSSE-YEITNNAKEADVIIVNTCGFIESAKQESI 59

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             +  +   KN+        L++  GC+ Q  G+E+    P +++++G   Y ++  ++ 
Sbjct: 60  DTILEMAEYKNNY----NCKLLIATGCLIQRYGDELKNLIPEIDIMLGVNDYNKIDRVIT 115

Query: 142 RARFGKRVVD--TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
               G +      +YS E+  E   I+       +  +A++ I EGC+ FCT+C++P  R
Sbjct: 116 EFIEGNKEASKLLNYSDENINEGSRIL-----TTQKESAYIRIAEGCNNFCTYCIIPKIR 170

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G   SR +  ++ EA  L   GV E+ L+ Q+     G  + G+K     LL  LS I+G
Sbjct: 171 GKFRSRRMENIISEATDLASKGVKELILIAQDTT-QYGSDIYGKK-NLHILLKELSNIEG 228

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           +  +R    +P  + D LI+     D ++ YL +P+Q  SD +LK M R+ +  +    I
Sbjct: 229 IKWIRVLYCYPEAIYDELIEEIAANDKVVKYLDIPIQHISDHVLKLMGRKTSKKDITDKI 288

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
           +++R   P+I I + FIVGFP ET +DF   ++ + +    +   FKYS    TP S M 
Sbjct: 289 EKLRKNIPNIIIRTTFIVGFPQETQEDFEEILEFLQEYKLDKVGVFKYSREEDTPASKMD 348

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWL 435
            Q+DE++K ER   L     +   + N   V +  ++LIE++  +     GR    +P +
Sbjct: 349 GQIDESIKEEREEKLMLSQEKISNNINKLKVDKKYDILIEEY--DGEFYKGRNFEMAPDI 406

Query: 436 QSVVL--NSKNHNIGDIIKVRITDVKISTLYGEL 467
              V   + K   IG+ +KV+I       L G +
Sbjct: 407 DGNVFFESPKKLEIGEFVKVKIIKNMDYDLIGVV 440


>gi|327539767|gb|EGF26370.1| SSU ribosomal protein S12P methylthiotransferase [Rhodopirellula
           baltica WH47]
          Length = 476

 Score =  366 bits (939), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 127/468 (27%), Positives = 223/468 (47%), Gaps = 22/468 (4%)

Query: 9   GVAHMVSQIVDQCIVPQ-RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVL 67
           G   M+     +   P+ R+ V S GC  N+ D+ +M     + GY  V+S+D AD +V+
Sbjct: 17  GTDPMIDP---ETGKPRGRYAVVSLGCPKNLVDTEQMLGRLDADGYRMVDSVDGADFVVV 73

Query: 68  NTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVV 127
           NTC   + A ++  + +  +  LK    ++G    VVV GC+A+ + +++L+  P ++ +
Sbjct: 74  NTCGFIDSARDESMAAIDEMLALK----RDGKLRNVVVTGCLAERQQDKLLQARPDIDAL 129

Query: 128 VGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCD 187
           VG      +  +++    G +   T +           +           A+L I EGCD
Sbjct: 130 VGVFGRNDIVSVVDELYSGLQEQRTIFKPAAVNPLSDAMRSAV--TPRHFAYLKISEGCD 187

Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTF 247
           + CTFC +P  RG   S+ + Q++DEA++L D+GV E+ ++ Q+   + G    GE    
Sbjct: 188 RLCTFCAIPKMRGKHFSKPIEQIIDEAKRLGDSGVREVVIVAQDTT-YYGMDRYGEP-RL 245

Query: 248 SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307
           + LL  L +I+ +  +R    +P  + D LI        ++PY+ +P+Q  SD++LK M 
Sbjct: 246 NQLLKELDKIESIDWIRLMYFYPMYIDDALIDTLASAKRIVPYIDMPLQHASDKMLKRMA 305

Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           R+ T      I+ ++RS    + + +  I GFPGET++DF   MD V +  +     F Y
Sbjct: 306 RKTTRSLQTDIVQKLRSRIDSLVMRTTMITGFPGETEEDFVELMDFVQESRFENLGVFTY 365

Query: 368 SPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKG 426
           S    TP + +  +VD  V A R   L +  ++    +ND+ VG   EVLI+ +  ++  
Sbjct: 366 SIEEDTPAARLPNRVDPEVAARRRDDLMELQQQIAFDWNDSRVGGTEEVLIDAEMPEQDN 425

Query: 427 KLVGRS----PWLQSVVL-----NSKNHNIGDIIKVRITDVKISTLYG 465
             +GR+    P +  ++            +G I    I   +   L  
Sbjct: 426 VFIGRTRSEAPDVDGLIYVSQVDPDSPVEVGQIRPCEIVASQGYDLVA 473


>gi|167035212|ref|YP_001670443.1| ribosomal protein S12 methylthiotransferase [Pseudomonas putida
           GB-1]
 gi|238066511|sp|B0KTL0|RIMO_PSEPG RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|166861700|gb|ABZ00108.1| MiaB-like tRNA modifying enzyme YliG [Pseudomonas putida GB-1]
          Length = 443

 Score =  366 bits (939), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 129/464 (27%), Positives = 215/464 (46%), Gaps = 34/464 (7%)

Query: 18  VDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA 77
           +       +    S GC   + DS R+      +GYE V + +DAD++V+NTC   + A 
Sbjct: 1   MSTTPATPKVGFVSLGCPKALVDSERILTQLRMEGYEVVPTYEDADVVVVNTCGFIDSAK 60

Query: 78  EKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLP 137
            +    +G         IKE G   V+V GC+   EG  I    P V  V GPQ Y ++ 
Sbjct: 61  AESLEVIGEA-------IKENG--KVIVTGCMGVEEGS-IRDVHPSVLSVTGPQQYEQVV 110

Query: 138 ELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197
             +      ++  +    +        +   G        A+L I EGC+  C+FC++P 
Sbjct: 111 NAVHEVVPPRQDHNPLIDL--------VPPQGVKLTPRHYAYLKISEGCNHSCSFCIIPS 162

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSD 249
            RG  +SR + +V+ EA +L+  GV EI ++ Q+ +A+      +    +G   K    +
Sbjct: 163 MRGKLVSRPVGEVLSEAERLVKAGVKEILVISQDTSAYGVDVKYKTDFWNGRPVKTRMLE 222

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
           L  +LS +   VRL Y   +P       + A G    ++PYL +P Q  S ++LKSM R 
Sbjct: 223 LCEALSSLGAWVRLHYVYPYPNVDDVIPLMAAG---KILPYLDIPFQHASPKVLKSMKRP 279

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369
                    I   R   P++ I S FIVGFPGET++DF+  +D + +    +   F+YSP
Sbjct: 280 AFEDRTLARIKNWREQCPELVIRSTFIVGFPGETEEDFQYLLDWLTEAQLDRVGCFQYSP 339

Query: 370 RLGTPGSNM-LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--G 426
             G P +++ LE+V +++K ER        +    +     +G+ IEVLI++  ++   G
Sbjct: 340 VEGAPANDLGLEEVPDDIKQERWDRFMAHQQAISTARLQLRIGKEIEVLIDEVEEQGSVG 399

Query: 427 KLVGRSPWLQSVVLNSKNH--NIGDIIKVRITDVKISTLYGELV 468
           +    +P +   V    +H    GD ++ R+ D     ++ E +
Sbjct: 400 RSFFDAPEIDGNVFIDGDHGFKPGDKVRCRVVDADEYDMWAEPI 443


>gi|330817141|ref|YP_004360846.1| 2-methylthioadenine synthetase [Burkholderia gladioli BSR3]
 gi|327369534|gb|AEA60890.1| 2-methylthioadenine synthetase [Burkholderia gladioli BSR3]
          Length = 455

 Score =  366 bits (939), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 125/468 (26%), Positives = 203/468 (43%), Gaps = 47/468 (10%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC   + DS ++     ++GYE   + D ADL+V+NTC   + A ++    +G
Sbjct: 6   KVGFVSLGCPKALVDSEQIITQLRAEGYEISGTYDGADLVVVNTCGFIDDAVQESLDAIG 65

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEE----ILRRSPIVNVVVGPQTYYRLPELLE 141
                            V+V GC+   +       I    P V  V GP     + + + 
Sbjct: 66  EALTENGK---------VIVTGCLGAKKSASGAGLIEEVHPKVLAVTGPHALGEVMQAVH 116

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
                           D F  L    G     R   A+L I EGC+  CTFC++P  RG 
Sbjct: 117 SHLP---------KPHDPFTDLVPAAGIKLTPRHY-AYLKISEGCNHRCTFCIIPSMRGD 166

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYS 253
            +SR +++V+ EA  L  +GV E+ ++ Q+ +A+      R    +G   K   ++L+ +
Sbjct: 167 LVSRPVAEVMLEAENLFKSGVKELLVISQDTSAYGVDVKYRTGFWNGRPLKTRMTELVAA 226

Query: 254 LSEI----KGLVRLRYTTSHPRDMSDCLIKAH-GDLDVLMPYLHLPVQSGSDRILKSMNR 308
           L E+       VRL Y   +P       + A       ++PYL +P Q     +LK M R
Sbjct: 227 LGELAAQYGAWVRLHYVYPYPHVDEVIPLMAEGASRGHVLPYLDVPFQHADPDVLKRMRR 286

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
              A +    + + R + PD+ I S FI GFPGET+  F   +D + +    +   F YS
Sbjct: 287 PANAEKVLDRVRKWREICPDLTIRSTFIAGFPGETEAQFETLLDFIREAELDRVGCFAYS 346

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL 428
           P  G   + +   + + V+ ER     +   E   +  +  VGQ ++VLI++   E G  
Sbjct: 347 PVEGATANELDGALPDEVREERRARFMEVAEEISAARIERKVGQTLKVLIDEVNAEGG-- 404

Query: 429 VGRS----PWLQSVVLN-----SKNHNIGDIIKVRITDVKISTLYGEL 467
           +GR+    P +  VV       +K + +GD + V IT      L+GE+
Sbjct: 405 IGRTAADAPEIDGVVYVEPAQGAKRYKVGDFVPVTITGADGHDLWGEV 452


>gi|325272756|ref|ZP_08139104.1| ribosomal protein S12 methylthiotransferase [Pseudomonas sp.
           TJI-51]
 gi|324102107|gb|EGB99605.1| ribosomal protein S12 methylthiotransferase [Pseudomonas sp.
           TJI-51]
          Length = 443

 Score =  366 bits (939), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 128/464 (27%), Positives = 215/464 (46%), Gaps = 34/464 (7%)

Query: 18  VDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA 77
           +       +    S GC   + DS R+      +GYE V + +DAD++V+NTC   + A 
Sbjct: 1   MSTTPATPKVGFVSLGCPKALVDSERILTQLRMEGYEVVPTYEDADVVVVNTCGFIDSAK 60

Query: 78  EKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLP 137
            +    +G         IKE G   V+V GC+   EG  I    P V  V GPQ Y ++ 
Sbjct: 61  AESLEVIGEA-------IKENG--KVIVTGCMGVEEGN-IRDVHPSVLSVTGPQQYEQVV 110

Query: 138 ELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197
             +      ++  +    +        +   G        A+L I EGC+  C+FC++P 
Sbjct: 111 NAVHEVVPPRQDHNPLIDL--------VPPQGVKLTPRHYAYLKISEGCNHSCSFCIIPS 162

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSD 249
            RG  +SR + +V+ EA +L+  GV EI ++ Q+ +A+      +    +G   K    +
Sbjct: 163 MRGKLVSRPVGEVLSEAERLVKAGVKEILVISQDTSAYGVDVKYKTDFWNGRPVKTRMLE 222

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
           L  +LS +   VRL Y   +P       + A G    ++PYL +P Q  S ++LKSM R 
Sbjct: 223 LCEALSSLGAWVRLHYVYPYPNVDDVIPLMAAG---KILPYLDIPFQHASPKVLKSMKRP 279

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369
                    I + R   P++ I S FIVGFPGET++DF+  +D + +    +   F+YSP
Sbjct: 280 AFEDRTLARIKQWREQCPELVIRSTFIVGFPGETEEDFQYLLDWLTEAQLDRVGCFQYSP 339

Query: 370 RLGTPGSNM-LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--G 426
             G P +++ L++V +++K +R        +    +     +G+ IEVLI++   +   G
Sbjct: 340 VEGAPANDLGLDEVPDDIKQDRWDRFMAHQQAISAARLQLRIGKEIEVLIDEVEAQGSVG 399

Query: 427 KLVGRSPWLQSVVLNSKNH--NIGDIIKVRITDVKISTLYGELV 468
           +    +P +   V    +H    GD ++ R+ D     ++ E V
Sbjct: 400 RSFFDAPEIDGSVFIDGDHGFKPGDKVRCRVVDADEYDMWAEPV 443


>gi|290996977|ref|XP_002681058.1| predicted protein [Naegleria gruberi]
 gi|284094681|gb|EFC48314.1| predicted protein [Naegleria gruberi]
          Length = 471

 Score =  366 bits (939), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 150/467 (32%), Positives = 244/467 (52%), Gaps = 56/467 (11%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
            +  F+++YGCQMNV D+  +  +    GY+ V+S  +A +I+LNTC +RE A  K++  
Sbjct: 9   KKGVFIETYGCQMNVSDTQIILSILDKNGYKLVDSDKEASVILLNTCAVRENAENKIWIR 68

Query: 84  LGRIRNLKNSRIKEGGD---------LLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYY 134
           L  ++  ++                 + + V GC+A+    +++  + +V+VVVGP  Y 
Sbjct: 69  LNELKKKRHENKHLHNFNPEEYPVSGVQIGVLGCMAERLKTKLI-ETNMVDVVVGPDQYR 127

Query: 135 RLPELLERARFGKRV--------------VDTDYSVEDKFERLSIVDGGYNRKRGVTAFL 180
            LP LL++    + +              ++   S+++ +  +  V  G     G +AF+
Sbjct: 128 DLPNLLKKNEESEMLQRSLDDNVEGRQAQLNVMLSMDETYADIEPVRVGDT---GKSAFV 184

Query: 181 TIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG--- 237
           +I  GCD  C++C+VP+TRG E SR ++ +++E R+L  NG+ E+TLLGQNVN++R    
Sbjct: 185 SIMRGCDNMCSYCIVPFTRGRERSRDITSILNEIRQLSKNGIKEVTLLGQNVNSYRDTSD 244

Query: 238 --------------KGLDGEKC---------TFSDLLYSLSEIKGLVRLRYTTSHPRDMS 274
                         +  DG K          TF++LLY +S+I   +R+RYT+ HP+D  
Sbjct: 245 SIYQEKYKNEGKEIETTDGFKTIYKPKIGGLTFTELLYEVSQIDKEMRIRYTSPHPKDYP 304

Query: 275 DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSD 334
           D LI+   +   +   +HLP QSGS  +L  M R +TA  Y  ++DRI++  P++A+SSD
Sbjct: 305 DSLIELIRETPNICNQIHLPAQSGSTNMLDRMRRGYTAESYIALVDRIKNRIPNVALSSD 364

Query: 335 FIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN-MLEQVDENVKAERLLC 393
           FI GF  ET+ D + T+ L++ + Y QA+ F YS R  T       + V  +VK  RL  
Sbjct: 365 FIAGFCSETEQDHQDTLKLLNHVKYDQAYLFAYSLREKTHAHRNYEDDVPADVKNRRLNE 424

Query: 394 LQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPWLQSV 438
           L +  RE      +  VG +  VLI+   K       VGR+   + V
Sbjct: 425 LVQTYRENLAIQYEKEVGTLQCVLIDSDSKRDPQNYWVGRTDNNKRV 471


>gi|212697105|ref|ZP_03305233.1| hypothetical protein ANHYDRO_01670 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212675880|gb|EEB35487.1| hypothetical protein ANHYDRO_01670 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 432

 Score =  366 bits (939), Expect = 6e-99,   Method: Composition-based stats.
 Identities = 136/448 (30%), Positives = 235/448 (52%), Gaps = 19/448 (4%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + + F +K+ GC++N Y+S  +E++F  +G+E     D+AD+ V+NTC +   +  K   
Sbjct: 1   MSKTFNIKTLGCKVNQYESEAIEELFKKRGFE--KKEDNADIYVINTCTVTNMSDRKSRQ 58

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            + + R       KE  D ++ V GC +Q +G+E+ +    V++V+G +    + +L E 
Sbjct: 59  TISKAR-------KENKDAIIAVIGCYSQVKGDEV-KEIEGVDIVLGSRNKEEVVDLCEN 110

Query: 143 --ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
             +   K     ++ + +  E L I     N+     +++ IQ+GC+ +C++C++PY RG
Sbjct: 111 FISDHVKTKDVEEFKIGEAIEDLEIS----NQADMTRSYIKIQDGCNMYCSYCLIPYARG 166

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
              SR L  ++DEA++L DNG  EI L G +V A  GK LD    +  D++  +++I G+
Sbjct: 167 NIASRDLVSIIDEAKRLRDNGFKEIVLTGIHV-ASYGKDLDLN-ISLIDVIEHIAKIDGI 224

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R ++  PR +    ++   D      + HL +QSGSD +LK MNR++    +++ +D
Sbjct: 225 ERIRLSSMEPRHIDREFLQRMKDTKKACDHFHLSLQSGSDDVLKLMNRKYDTKIFKEKVD 284

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
            IR   P+  +++D IVGFP E++ +   T D V  I +++   FKYS R GT  +NM  
Sbjct: 285 LIREYFPNAGLTTDIIVGFPNESEKNHEQTKDFVRNIKFSKTHLFKYSKRDGTKAANMKN 344

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440
           QVD N K  R   L    ++    F D  +G+ + VL E   +  G   G S     V  
Sbjct: 345 QVDGNTKKRRSKELSVIEKKNSHEFLDKQIGKTLSVLFETKTELDGYKSGYSTNYLRVH- 403

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
              +  I +I  ++IT      L G+++
Sbjct: 404 TKDDVGINEIKDIKITQRIDDYLIGQII 431


>gi|171472297|gb|ACB46852.1| MiaB [Pseudomonas stutzeri]
          Length = 440

 Score =  366 bits (939), Expect = 6e-99,   Method: Composition-based stats.
 Identities = 128/456 (28%), Positives = 209/456 (45%), Gaps = 34/456 (7%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
                S GC     DS R+     ++GY+ V +  DAD++V+NTC   + A  +    +G
Sbjct: 6   TVGFVSLGCPKATVDSERILTQLRTEGYQIVPTYQDADVVVVNTCGFIDSAKAESLDAIG 65

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                         +  V+V GC+  AE + I    P V  V GPQ Y ++   +     
Sbjct: 66  EA---------IAENGKVIVTGCMGVAE-DNIRNVHPSVLAVTGPQQYEQVVNAVHE--- 112

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
               V       D F  L    G     R   A+L I EGC+  C+FC++P  RG  +SR
Sbjct: 113 ----VVPPNIDHDPFLDLVPPQGIKLTPRHY-AYLKISEGCNHSCSFCIIPSMRGKLVSR 167

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYSLSEI 257
            +  V+ EA +L+  GV EI ++ Q+ +A+      +    +G+  K    +L  +LS +
Sbjct: 168 PVGDVLSEAERLVKAGVKEILVISQDTSAYGVDVKYKTDFWNGQPVKTRMLELCQALSSM 227

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
              VRL Y   +P       + A G    L+PYL +P Q  S ++LK+M R     +   
Sbjct: 228 GVWVRLHYVYPYPNVDDVIPLMAAG---KLLPYLDIPFQHASPKVLKAMKRPAFEDKTLA 284

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
            I + R + P++ I S FIVGF GET++DF+  +D + +    +   F+YSP  G P   
Sbjct: 285 RIKQWREICPELTIRSTFIVGFLGETEEDFQYLLDWLTEAQLDRVGCFQYSPVEGAPAEE 344

Query: 378 M-LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPW 434
           + LE V + +K +R        +    +  +  +GQ +EVLI++  ++   G+    +P 
Sbjct: 345 LGLEPVPDEIKQDRWDRFMAHQQAISAARLERKIGQELEVLIDEVDEDGAIGRSCADAPE 404

Query: 435 LQSVVLNSKN--HNIGDIIKVRITDVKISTLYGELV 468
           +  +V          GD ++VR+T      L+ E +
Sbjct: 405 IDGLVYIDSEQPLQAGDKVRVRVTHSDEYDLWAEAI 440


>gi|313897043|ref|ZP_07830590.1| tRNA methylthiotransferase YqeV [Selenomonas sp. oral taxon 137
           str. F0430]
 gi|312974490|gb|EFR39958.1| tRNA methylthiotransferase YqeV [Selenomonas sp. oral taxon 137
           str. F0430]
          Length = 431

 Score =  366 bits (939), Expect = 6e-99,   Method: Composition-based stats.
 Identities = 132/444 (29%), Positives = 220/444 (49%), Gaps = 20/444 (4%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
               + GC++N +++  ME +F ++GY+ V   + AD+ V+NTC +   +  K    + R
Sbjct: 4   VAFMTLGCKVNQFETETMEGLFRARGYDVVPFEESADVYVVNTCSVTHLSDRKSRQIIRR 63

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
                    +      + V GC AQ   EEI      V VV+G +   ++ + +E A   
Sbjct: 64  AA-------RTNPRACIAVCGCYAQVAPEEIRA-LEGVRVVIGTKERAQIVDYVEEAMRA 115

Query: 147 KRVVD---TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           +  +    TD      FE + +       +    AFL I++GC  FCTFC++PY RG   
Sbjct: 116 ESGISGQITDIMQARTFEDIPLAHMPQRTR----AFLKIEDGCQNFCTFCIIPYARGPVK 171

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR L+ V  E  ++   G  EI L G ++ A  G  L G + T +D   +   +  L RL
Sbjct: 172 SRELAAVRRETERIAAAGFHEIVLTGIHLGA-YGIDLPG-RPTLADACRTALSLPELRRL 229

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R  +    ++S+ L++          +LHLP+Q+GSD +L +MNR +    + ++I+ +R
Sbjct: 230 RLGSLESVELSNDLLELIRTEPRFAAHLHLPLQAGSDGVLTAMNRHYDTAAFARLIEDVR 289

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              P +A+S+D IVGFPGET+  F  ++D V ++G+A+   F YS R GTP +   +QV 
Sbjct: 290 RAVPGVAVSTDIIVGFPGETEAQFEESLDFVRRMGFARMHVFPYSARKGTPAARRPDQVP 349

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
             ++ ER   +Q    E  V ++ A +G + +VL E      G   G +     V  ++ 
Sbjct: 350 APIRKERAARMQALAEELAVGYHRAALGTVTDVLFETTAH--GVTDGLTDTYIRVYTDAP 407

Query: 444 NHNIGDIIKVRITDVKISTLYGEL 467
               GD++ VR+T +    ++GE 
Sbjct: 408 VTR-GDLVSVRLTRLFRDGVWGEP 430


>gi|255994244|ref|ZP_05427379.1| RNA modification enzyme, MiaB family [Eubacterium saphenum ATCC
           49989]
 gi|255993912|gb|EEU04001.1| RNA modification enzyme, MiaB family [Eubacterium saphenum ATCC
           49989]
          Length = 451

 Score =  366 bits (939), Expect = 6e-99,   Method: Composition-based stats.
 Identities = 124/456 (27%), Positives = 216/456 (47%), Gaps = 22/456 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + F+++ GC  N  DS      FFS G+++ +S+ DAD++V+NTC     A  +    + 
Sbjct: 2   KIFIETLGCPKNFNDSEYAYGSFFSAGFKKADSISDADVVVVNTCGFIHDAKVESIDAIF 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                K S        ++VV+GC++Q   EE+ +  P V++  G   Y+ LPE+ ++   
Sbjct: 62  DAAQKKKS------SAILVVSGCLSQRYMEELKKEMPEVDIFAGVNDYFNLPEICKKRLN 115

Query: 146 -GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            GK           K +        +      +  + I EGC+  C FC++P  RG   S
Sbjct: 116 DGKSKGAVLTKSPQKNDFPEPGSRAFENVNNNSYTIKISEGCNNKCAFCIIPSIRGSFRS 175

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R +  +V EA  L+  G  EI L+GQ+V A+     + +  T + LL  +S+I+G   +R
Sbjct: 176 RYIQDIVKEAEFLVTLGAKEIILIGQDVTAFGTDRRNED--TLALLLREVSKIEGEFWIR 233

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
               +   ++D LI        +  Y+ +P+Q  SD +L +M R   +    + I  +RS
Sbjct: 234 LMYCYDNKITDELIAEIMRNKKVCKYIDMPIQHISDNVLSAMRRGSDSDLIIERIRALRS 293

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
              DI I +  I GFPGE+++DF    + V +  + +   F YS   GT  +   +Q+ +
Sbjct: 294 NIDDIHIRTTLITGFPGESEEDFNKLYEFVKEQEFDRLGVFSYSEEEGTAAAK-CKQIPD 352

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK--HGKEKG---KLVGRS----PWL 435
            ++ +R   + +   E   + N   VG+ ++VLI+    G++ G    L+GR+    P +
Sbjct: 353 EIREQRRDSIMRLQSEISKNKNKMMVGKTMKVLIDGVIEGEQSGSERMLIGRTEFDAPEI 412

Query: 436 QSVVLNSK---NHNIGDIIKVRITDVKISTLYGELV 468
            + V+        ++G+   V IT      +YGE V
Sbjct: 413 DNCVIFKPAICGKDVGEFTYVHITGSSEYDVYGEEV 448


>gi|166712649|ref|ZP_02243856.1| hypothetical protein Xoryp_14640 [Xanthomonas oryzae pv. oryzicola
           BLS256]
          Length = 454

 Score =  365 bits (938), Expect = 6e-99,   Method: Composition-based stats.
 Identities = 133/458 (29%), Positives = 211/458 (46%), Gaps = 39/458 (8%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC   + DS R+      +GY+ V S D AD++V+NTC   + A  +    +G
Sbjct: 7   KVGFVSLGCPKALVDSERILTQLRVEGYDIVPSYDAADVVVVNTCGFIDSAVTESLDAIG 66

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
              +             V+V GC+ +   E+I    P V  V GPQ Y  + E +  A  
Sbjct: 67  EAMSANGK---------VIVTGCLGKR-PEQIREAYPQVLAVSGPQDYQSVMEAVHAALP 116

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            +          D F  L + D G        A+L I EGC+  C+FC++P  RG  +SR
Sbjct: 117 PR---------HDPFVDL-VPDYGIKLTPRHYAYLKISEGCNHRCSFCIIPSMRGDLVSR 166

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSD---------LLYSLSE 256
            + +V+ EA +L+  GV E+ ++ Q+ +A  G  L   +  + D         L   LSE
Sbjct: 167 PVDEVLREAERLVRGGVKELLVVSQDTSA-YGVDLKYAERPWRDRMYQTRMKALCEGLSE 225

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           +    RL Y   +P       + A G    L+PYL +P Q  S RILK M R     +  
Sbjct: 226 LGVWTRLHYVYPYPHVDDVLPLMAEG---KLLPYLDIPFQHASPRILKLMKRPGAVEKTL 282

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
           Q + R +++ P+I + S FIVGFPGETD +F + +D +D+    +  +F YSP  G   +
Sbjct: 283 QRVQRWKAMCPEITVRSTFIVGFPGETDAEFESLLDFLDQAQLDRVGAFAYSPVDGASAN 342

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE--KHGKEKGKLVGRSPW 434
            + + V E VK ERL     K  E      +A +G + + L++  +      +    +P 
Sbjct: 343 ALPDPVPEEVKQERLARFMAKQAEISALRLEAKIGSVHQCLVDLIEDDIAVARSRADAPE 402

Query: 435 LQS-VVLNSKNHN---IGDIIKVRITDVKISTLYGELV 468
           +   V + +       +GD++ V ITD     L+G+ +
Sbjct: 403 IDGLVHIQNGGELGLKVGDLVDVEITDSDEHDLFGDAL 440


>gi|188589299|ref|YP_001920259.1| hypothetical protein CLH_0864 [Clostridium botulinum E3 str. Alaska
           E43]
 gi|188499580|gb|ACD52716.1| conserved hypothetical protein [Clostridium botulinum E3 str.
           Alaska E43]
          Length = 434

 Score =  365 bits (938), Expect = 6e-99,   Method: Composition-based stats.
 Identities = 138/446 (30%), Positives = 232/446 (52%), Gaps = 18/446 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    + GC++N Y++  M + F  +GY   +  D AD+ V+NTC +     +K    + 
Sbjct: 2   KVAFATLGCRVNQYETEAMTEKFIREGYSVTDFDDFADVYVINTCTVTNMGDKKSRQIIS 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           + R       +   + ++ V GC +Q   EE+  +   V+VV+G +    +   + +AR 
Sbjct: 62  KAR-------RTNSNAIIAVVGCYSQIAPEEV-SKIEGVDVVLGTRNKGDIVYFVNKARD 113

Query: 146 GK--RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            K  +V   +     +FE L+I +     +    AFL IQ+GC++FCTFC++PY RG   
Sbjct: 114 EKAIQVSVNEVLKNKEFEELNIEEY----QDKTRAFLKIQDGCNRFCTFCLIPYARGATC 169

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           S+   +V++E +KL ++G  E+ L G +  A  G  L G   T   LL  + +I G+ R+
Sbjct: 170 SKKPEKVIEEVKKLAEHGFKEVILSGIHT-ASYGVDL-GAGVTLISLLEDIEKIDGIDRV 227

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R  +  P   +D +I    ++  L P+ HL +QSGSD  LK MNRR+TA EY + +  +R
Sbjct: 228 RIGSIEPAFFTDEVINKIKNMKKLCPHFHLSLQSGSDATLKRMNRRYTADEYAKTVQTLR 287

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
               D++I++D IVGFPGET+++F  T + + K+   +   FKYSPR GT  + M  Q+D
Sbjct: 288 DNIQDVSITTDLIVGFPGETEEEFNETYEYLKKLKLTKVHLFKYSPRKGTKAAEMPNQID 347

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKH-GKEKGKLVGRSPWLQSVVL-N 441
             +K +R   L +  +E +V F    VG+ + VLIE+    + G   G +       + +
Sbjct: 348 GTIKDKRSKILSELNKENEVDFVKNLVGREMGVLIERECSNKPGIFEGYTKNYVKAEISD 407

Query: 442 SKNHNIGDIIKVRITDVKISTLYGEL 467
           +    IG I+   I     + + G++
Sbjct: 408 ASKEMIGKIMDCNIETYDENYIVGKI 433


>gi|260063207|ref|YP_003196287.1| hypothetical protein RB2501_00316 [Robiginitalea biformata
           HTCC2501]
 gi|88783301|gb|EAR14473.1| hypothetical protein RB2501_00316 [Robiginitalea biformata
           HTCC2501]
          Length = 476

 Score =  365 bits (938), Expect = 6e-99,   Method: Composition-based stats.
 Identities = 130/463 (28%), Positives = 213/463 (46%), Gaps = 18/463 (3%)

Query: 5   IKLIGVAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADL 64
           +K  GV+   +  +    + +     + GC++N  ++  +      QG  +V     ADL
Sbjct: 18  VKPAGVSPGPADDLKNT-MDRTVAFYTLGCKLNFAETSTIARDLVEQGLRKVEFGQPADL 76

Query: 65  IVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIV 124
            V+NTC + + A ++  + + +        ++   +  V V GC AQ + EEI    P V
Sbjct: 77  YVINTCSVTDNADKRCRAVVRQA-------LRNNPEAFVAVVGCYAQLKPEEIAS-IPGV 128

Query: 125 NVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQE 184
           ++V+G    + L   L+         D       +        G Y       AFL +Q+
Sbjct: 129 DLVLGATEKFNLTRYLDDLSKN----DMGEVHSCEIREADFYVGSYAIGDRTRAFLKVQD 184

Query: 185 GCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK 244
           GCD  CT+C +P  RGI  S +L  V++ AR++   G+ EI L G N+    GKG +G+K
Sbjct: 185 GCDYKCTYCTIPLARGISRSDTLENVLENAREISARGIREIVLTGVNIG-DYGKGENGDK 243

Query: 245 ---CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
               TF DL+ +L ++ G+ R+R ++  P  + +  I         +P+ H+P+QSGS+ 
Sbjct: 244 RHKHTFLDLVRALDDVPGIERVRISSIEPNLLKNETIDFVAGSRHFVPHFHIPLQSGSNS 303

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
           ILK M RR+    Y   + RIR V P   I  D IVGFPGET+D F  T + + ++  + 
Sbjct: 304 ILKRMRRRYMRELYADRVARIREVMPHACIGVDVIVGFPGETEDHFMETYNFLHELEVSY 363

Query: 362 AFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKH 421
              F YS R  TP + M   V    +  R   L+    +++ +F    +     VL E  
Sbjct: 364 LHVFTYSERADTPAAKMDGAVPPAERNRRSKMLRSLSAKKRRAFYQEQLDTEQTVLFEGE 423

Query: 422 GKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLY 464
            K+ G + G +     V         G  ++VR+T++    L 
Sbjct: 424 NKK-GYIHGFTRNYVKVKAPWDPALTGTTLRVRLTEIDSDGLV 465


>gi|114566788|ref|YP_753942.1| 2-methylthioadenine synthetase [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
 gi|122318190|sp|Q0AXI3|RIMO_SYNWW RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|114337723|gb|ABI68571.1| 2-methylthioadenine synthetase [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
          Length = 439

 Score =  365 bits (938), Expect = 6e-99,   Method: Composition-based stats.
 Identities = 125/444 (28%), Positives = 223/444 (50%), Gaps = 17/444 (3%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
             S GC  N  D+  M       G+  VNS++ ADL+V+NTC     A E+    +    
Sbjct: 5   FISLGCSKNRVDTEVMMAALKKAGHRIVNSLERADLVVVNTCGFITPAKEESIEAIIETA 64

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
            LK    K+G    ++ AGC++Q  G E+L   P ++ V G  +   +  ++ R   G+R
Sbjct: 65  ELK----KKGSLQFLIAAGCLSQRYGRELLLEIPELDGVFGISSVSSIAGVVNRIAQGER 120

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           V  T+ +  + FE+   +          +A+L I EGC+  C++CV+P  RG   SR ++
Sbjct: 121 VCFTEATPTEYFEKGHRI----LTTPPGSAYLKISEGCNNSCSYCVIPSIRGKLRSRQIN 176

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
           ++++EA +L+  G+ E+ L+ Q+ +A  G  +  +      LL  LS++ GL  +R    
Sbjct: 177 ELLNEAAQLLKMGIKELVLVAQDTSA-YGHDISPQ-SALPTLLRELSKLDGLEWIRLMYL 234

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
           HP  +SD +I      + ++PYL +P+Q  S +ILK M+RRH     R +I ++R+  P+
Sbjct: 235 HPLYLSDDIIDVVAYENKVLPYLDIPIQHASSKILKLMHRRHDNSHLRTMISKLRARIPN 294

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           + + +  ++GFPGE + DF    + V +  +    +F + P  G+  + +  Q+++ +KA
Sbjct: 295 LTLRTTVMLGFPGEEEKDFAELYEFVAESQFDWLGAFSFVPEEGSKAALLPNQIEDEIKA 354

Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVLNSKN 444
           ER   + +  ++     N A +    +VLI      K   VGR+    P +  + L   +
Sbjct: 355 ERKDKILRLQQKITRQKNLARINTQEKVLISSQL-SKNLFVGRTYFQAPEVDGLTLVKTD 413

Query: 445 HNI--GDIIKVRITDVKISTLYGE 466
             +  GD + V++  V+   + GE
Sbjct: 414 FKLTKGDFVDVQLVGVRNYDMIGE 437


>gi|170702240|ref|ZP_02893142.1| MiaB-like tRNA modifying enzyme YliG [Burkholderia ambifaria
           IOP40-10]
 gi|172060745|ref|YP_001808397.1| ribosomal protein S12 methylthiotransferase [Burkholderia ambifaria
           MC40-6]
 gi|238065301|sp|B1YR17|RIMO_BURA4 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|170132845|gb|EDT01271.1| MiaB-like tRNA modifying enzyme YliG [Burkholderia ambifaria
           IOP40-10]
 gi|171993262|gb|ACB64181.1| MiaB-like tRNA modifying enzyme YliG [Burkholderia ambifaria
           MC40-6]
          Length = 453

 Score =  365 bits (938), Expect = 7e-99,   Method: Composition-based stats.
 Identities = 126/469 (26%), Positives = 206/469 (43%), Gaps = 48/469 (10%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC   + DS ++     ++GYE   + D ADL+V+NTC   ++A ++    +G
Sbjct: 6   KVGFVSLGCPKALVDSEQIITQLRAEGYEISGTYDGADLVVVNTCGFIDEAVQESLDAIG 65

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEE----ILRRSPIVNVVVGPQTYYRLPELLE 141
                            V+V GC+           I    P V  V GP     + + + 
Sbjct: 66  EALTENGK---------VIVTGCLGAKSSASGSNLIEEVHPKVLAVTGPHAVGEVMQAVH 116

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
                           D F  L    G     R   A+L I EGC+  CTFC++P  RG 
Sbjct: 117 SHLP---------KPHDPFVDLVPAAGIKLTPRHY-AYLKISEGCNHRCTFCIIPSMRGD 166

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYS 253
            +SR +++V+ EA  L  +GV E+ ++ Q+ +A+      R    +G+  K   +DL+ +
Sbjct: 167 LVSRPVAEVMLEAENLFKSGVKELLVISQDTSAYGVDVKYRTGFWNGKPIKTRMTDLVAA 226

Query: 254 LSEI----KGLVRLRYTTSHPRDMSDCLIKAHGDLD-VLMPYLHLPVQSGSDRILKSMNR 308
           L E+       VRL Y   +P       + A G     ++PYL +P Q     +LK M R
Sbjct: 227 LGELAAQYGAWVRLHYVYPYPSVDEVIPLMAEGPFKGHVLPYLDVPFQHAHPEVLKRMKR 286

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
              A +  + + + R + PD+ I S FI GFPGET++ F   +D + +    +   F YS
Sbjct: 287 PANAEKVLERVQKWREICPDLTIRSTFIAGFPGETEEQFETLLDFIREAELDRVGCFAYS 346

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL 428
           P  G   + +   + ++V+  R     +   E         VG+ ++VLI++   E G  
Sbjct: 347 PVEGATANELDGALPDDVREARRARFMEVAEEVSAQRIQRKVGKTLKVLIDEVSAEGG-- 404

Query: 429 VGRS----PWLQSVVLN------SKNHNIGDIIKVRITDVKISTLYGEL 467
           +GR+    P +  VV        SK + +GD + V+IT      L+GE+
Sbjct: 405 IGRTAADAPEIDGVVYVEPATKASKRYKVGDFVSVKITGADGHDLWGEV 453


>gi|298385677|ref|ZP_06995235.1| 2-methylthioadenine synthetase [Bacteroides sp. 1_1_14]
 gi|298261818|gb|EFI04684.1| 2-methylthioadenine synthetase [Bacteroides sp. 1_1_14]
          Length = 436

 Score =  365 bits (938), Expect = 7e-99,   Method: Composition-based stats.
 Identities = 112/454 (24%), Positives = 206/454 (45%), Gaps = 35/454 (7%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEKVYS 82
           +R  + + GC  N+ DS ++       GY   +  +  + ++ V+NTC     A E+  +
Sbjct: 4   KRIDIITLGCSKNLVDSEQLMRQLEEAGYSVTHDTENPEGEIAVINTCGFIGDAKEESIN 63

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +      K      G    + V GC+++   +E+    P V+   G   +  L + L +
Sbjct: 64  MILEFAERKEE----GDLKKLFVMGCLSERYLQELAIEIPQVDKFYGKFNWKELLQDLGK 119

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
                      Y  E   ER       Y       A+L I EGCD+ C++C +P   G  
Sbjct: 120 T----------YHEELYIERTLTTPKHY-------AYLKISEGCDRKCSYCAIPIITGRH 162

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           IS+ + ++VDE R L+  GV E  ++ Q +  + G  L  +K    +L+  +SEI G+  
Sbjct: 163 ISKPMEEIVDEVRYLVSQGVKEFQVIAQELT-YYGVDLY-KKQMLPELIERISEIPGVEW 220

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R   ++P      L +   + D +  Y+ + +Q  SD +LK M R+ +  +  ++I++ 
Sbjct: 221 IRLHYAYPAHFPTDLFRVMRERDNVCKYMDIALQHISDNMLKLMRRQVSKEDTYKLIEQF 280

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQ 381
           R   P I + +  +VG PGET++DF    + V K  + +  +F YS   GT  +    + 
Sbjct: 281 RKEVPGIHLRTTLMVGHPGETEEDFEELKEFVRKARFDRMGAFAYSEEEGTYAAQQYEDS 340

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQS 437
           + + +K  RL  L    +      + A +GQ ++V+I++   E    +GR+    P +  
Sbjct: 341 IPQEIKQARLDELMDIQQGISAELSAAKIGQQMKVIIDRI--EGDYYIGRTEFDSPEVDP 398

Query: 438 VV---LNSKNHNIGDIIKVRITDVKISTLYGELV 468
            V   ++ +   IG   +V +TD     LY +++
Sbjct: 399 EVLISVSGEELEIGQFYQVEVTDADDFDLYAKIL 432


>gi|332290240|ref|YP_004421092.1| hypothetical protein UMN179_02182 [Gallibacterium anatis UMN179]
 gi|330433136|gb|AEC18195.1| conserved hypothetical protein [Gallibacterium anatis UMN179]
          Length = 445

 Score =  365 bits (938), Expect = 7e-99,   Method: Composition-based stats.
 Identities = 122/458 (26%), Positives = 211/458 (46%), Gaps = 41/458 (8%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
             S GC  N+ DS R+     ++GY  V S D+ADL+++NTC   + A ++    +G   
Sbjct: 10  FLSLGCPKNLVDSERILTELRAEGYNIVPSYDNADLVIVNTCGFIDSAVQESLEAIGEAL 69

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
                         V+V GC+  A+  +I    P V  + GP +Y  +   + +      
Sbjct: 70  EENGK---------VIVTGCLG-AKENQIREVHPKVLEITGPHSYEAVMTHVHKYAP--- 116

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
                   E       +   G        A++ I EGCD  CTFC++P  RG   SR ++
Sbjct: 117 ------KPEYNPYLNVVPKQGVKLTPKHYAYVKISEGCDHRCTFCIIPSMRGDLDSRPIN 170

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAW-----------RGKGLDGE--KCTFSDLLYSLS 255
            ++DEA++L+D GV E+ ++ Q+ +A+           +    +G   K     L   L 
Sbjct: 171 TILDEAKRLVDAGVKELLIVSQDTSAYALDKNQKEQKSKTVFWNGMPIKNDLITLCEQLG 230

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
            +   VRL Y   +P       + A G    ++PYL +P+Q  S +ILK+M R  +    
Sbjct: 231 TLGVWVRLHYVYPYPHVDKLIPLMAQG---KILPYLDIPLQHASPKILKAMKRPGSIDRT 287

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
            + I + R + P++ + S FIVGFPGET++DF+  +D + +    +   FK+SP  G   
Sbjct: 288 LERIKQWREICPELTLRSTFIVGFPGETEEDFQMLLDFIQEAQLDRVGCFKFSPVEGAVA 347

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSP 433
           + M EQV E VK ER     +  ++         +G+ + V+I++  +E   G+ +  +P
Sbjct: 348 TEMAEQVPEEVKEERFHRFMQLQQQISAQRLQQKIGKTLPVMIDEIDEEGIIGRSMADAP 407

Query: 434 WLQSVV----LNSKNHNIGDIIKVRITDVKISTLYGEL 467
            +  VV    ++ +   IG+++   I +     L+  +
Sbjct: 408 EIDGVVYIDNISEQQVKIGEVVMATIHNADEYDLWATI 445


>gi|257459334|ref|ZP_05624447.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Campylobacter gracilis
           RM3268]
 gi|257443263|gb|EEV18393.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Campylobacter gracilis
           RM3268]
          Length = 431

 Score =  365 bits (938), Expect = 7e-99,   Method: Composition-based stats.
 Identities = 146/448 (32%), Positives = 234/448 (52%), Gaps = 18/448 (4%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + +  F+++ GC MNV DS  +      Q YE  + ++ ADLI++NTC +REK   K++S
Sbjct: 1   MSKLLFIQTLGCAMNVRDSEHIIAQLKEQDYEITDDVNIADLILINTCSVREKPVHKLFS 60

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +G     +    K      + V GC A   G EI +R+P V+ V+G +   ++ + +  
Sbjct: 61  EIGAFDKARKKGSK------IGVCGCTASHLGGEIFKRAPFVDFVLGARNVSKISQAVRT 114

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            +F    ++ D S     +  S             +F+ I  GCDK C++C+VP TRG E
Sbjct: 115 PKFISTDINYDESEFAFGDFAS---------SPYKSFINIMIGCDKKCSYCIVPQTRGDE 165

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG-EKCTFSDLLYSLSEIKGLV 261
           IS     ++ EA +    G  EI LLGQNVN +  +  +  EK  FSDLL  LS+I+G+ 
Sbjct: 166 ISIPAQIILREAERSAARGAKEIFLLGQNVNNYGKRFSNAHEKIDFSDLLMRLSKIEGIE 225

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+T+ HP  M D  +    +   +   +H+P+QSGS ++L+ M R +T   Y     +
Sbjct: 226 RIRFTSPHPLHMDDKFLDVFCNNPKICKSMHMPLQSGSSKVLRDMKRGYTKQWYLDRALK 285

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R   P +AIS+D IVG+P E++DDF  TM++++ + + Q FSFK+SPR  TP +++   
Sbjct: 286 LRQSCPGVAISTDIIVGYPSESEDDFAETMEVLEAVRFEQVFSFKFSPRPLTPAASLKP- 344

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           +D+ + +ERL  LQ    +       A   +I +V  E+  +E G   GRS     +   
Sbjct: 345 LDDEISSERLSRLQNAHAKILDEIARAQKDKIFDVYFEEL-REGGTACGRSFSNFLICAQ 403

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELVV 469
                +G    VRI       LYG+++ 
Sbjct: 404 GGEELLGKTRGVRIEKTARMALYGKVIA 431


>gi|262372668|ref|ZP_06065947.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Acinetobacter junii
           SH205]
 gi|262312693|gb|EEY93778.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Acinetobacter junii
           SH205]
          Length = 447

 Score =  365 bits (938), Expect = 7e-99,   Method: Composition-based stats.
 Identities = 124/459 (27%), Positives = 206/459 (44%), Gaps = 37/459 (8%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC   + DS R+     ++GY+  +  D ADL+V+NTC   E A ++    +G
Sbjct: 5   KVGFVSLGCPKALVDSERILTQLKTEGYQVASDYDGADLVVVNTCGFIESAVQESLDAIG 64

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                         +  V+V GC+   + ++I +  P V  V G   Y  + E +     
Sbjct: 65  EA---------MSENGRVIVTGCLG-KDEDKIRQMHPNVLKVTGAAAYQDVMEAVHEY-- 112

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                      +       + + G        A+L I EGC+  CTFC++P  RG  +SR
Sbjct: 113 ------VPAPPKHNPFIDLVPEQGVRLTPKHYAYLKISEGCNHRCTFCIIPSMRGDLVSR 166

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYSLSEI 257
            +  V+DEA  L   GV E+ ++ Q+ +A+      +    +G+  K  F D+  +L ++
Sbjct: 167 PVGSVLDEAAALKRAGVKEVLVISQDTSAYGVDTKYKLDFWNGQPVKTKFYDMCEALGQL 226

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
              VRL Y   +P   +   + A G    ++PYL +P Q  S RILK M R   +    +
Sbjct: 227 GIWVRLHYVYPYPHVDAVIDLMAQG---KILPYLDIPFQHASPRILKLMKRPAHSENTLE 283

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
            +   R   P++ I S F+VGFPGET++DF+  +D + +    +   F YSP  G   ++
Sbjct: 284 RLKLWREKCPELVIRSTFVVGFPGETEEDFQILLDWLKEAQLDRVGCFTYSPVEGATAND 343

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----P 433
           + + V E +K ER     +  +E   +     +GQ + VL++    E    V RS    P
Sbjct: 344 LPDHVPEEIKQERYERFMEVQQEISAAKLQKRIGQKMTVLVDSLEDEFPVAVARSYADAP 403

Query: 434 WLQSVVLNSKNH----NIGDIIKVRITDVKISTLYGELV 468
            +   V            GD+++V ITD     L+ +L+
Sbjct: 404 EIDGNVFVEDIDKSVIKAGDLLEVEITDADEYDLFAKLI 442


>gi|315608919|ref|ZP_07883891.1| RNA modification enzyme [Prevotella buccae ATCC 33574]
 gi|315249299|gb|EFU29316.1| RNA modification enzyme [Prevotella buccae ATCC 33574]
          Length = 434

 Score =  365 bits (938), Expect = 7e-99,   Method: Composition-based stats.
 Identities = 124/449 (27%), Positives = 206/449 (45%), Gaps = 35/449 (7%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEKVYSFLGR 86
           + + GC  N+ DS  +   F + GY  V+       ++ V+NTC   E A ++  + +  
Sbjct: 8   IITMGCSKNLVDSEVLMKQFEANGYRCVHDAAHPQGEIAVINTCGFIETAKQESINTILE 67

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
               K      G    + V GC++Q   +E+    P V+   G   Y +L   L +A   
Sbjct: 68  FVQAKTE----GRLNKLYVMGCLSQRYKDELEAEIPEVDKFYGKFNYKQLLADLGKA--- 120

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
                         E  S     +       A+L I EGCD+ C +C +P   G  +SR 
Sbjct: 121 --------------ELPSCNGRRHLTTPRHYAYLKIAEGCDRHCAYCAIPLMTGRHVSRP 166

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
           + +++DE R+L+  GV E  ++ Q +  + G  LDG     ++L+  +++I G+  +R  
Sbjct: 167 MDEILDEVRELVAGGVKEFQVIAQELT-YYGIDLDGH-HHIAELISRMADIPGVKWIRLH 224

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
            ++P      L+    +   +  YL + +Q  SD IL  M+R  T  E  ++I ++R   
Sbjct: 225 YAYPNQFPMDLLDVMRERPNVCRYLDIALQHISDHILSRMHRHVTKQETVELIRKMREAV 284

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP-GSNMLEQVDEN 385
           P I I +  +VGFPGET+DDFR  +D V +  + +  +F YS   GT    +  + V  +
Sbjct: 285 PGIHIRTTLLVGFPGETEDDFRQLVDFVREARFERMGAFAYSEEEGTYSAEHYEDDVPAD 344

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQS-VVL 440
           VK  RL  L    +E         VGQ++ V+I++  KE    VGR+    P +   V++
Sbjct: 345 VKQRRLDELMAVQQEISAEIEAGKVGQVMPVIIDR--KEGNYYVGRTEFCSPEVDPEVLI 402

Query: 441 NSKNHNI--GDIIKVRITDVKISTLYGEL 467
            +    +  G    V+I D +   LYGEL
Sbjct: 403 PAGRKRLRTGCFYNVKIVDSEEFDLYGEL 431


>gi|77457418|ref|YP_346923.1| hypothetical protein Pfl01_1191 [Pseudomonas fluorescens Pf0-1]
 gi|123758469|sp|Q3KH22|RIMO_PSEPF RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|77381421|gb|ABA72934.1| SSU ribosomal protein S12P methylthiotransferase [Pseudomonas
           fluorescens Pf0-1]
          Length = 445

 Score =  365 bits (938), Expect = 7e-99,   Method: Composition-based stats.
 Identities = 132/464 (28%), Positives = 218/464 (46%), Gaps = 34/464 (7%)

Query: 18  VDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA 77
                   +    S GC   + DS R+      +GY+ V++  DAD++V+NTC   + A 
Sbjct: 3   TTPAPANPKVGFVSLGCPKALVDSERILTQLRMEGYDVVSTYQDADVVVVNTCGFIDSAK 62

Query: 78  EKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLP 137
            +    +G         IKE G   V+V GC+   EG  I    P V  V GPQ Y ++ 
Sbjct: 63  AESLEVIGEA-------IKENG--KVIVTGCMGVEEGN-IRDVHPSVLAVTGPQQYEQVV 112

Query: 138 ELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197
             +      K+  +    +        +   G        A+L I EGC+  C+FC++P 
Sbjct: 113 NAVHEVVPPKQDHNPLIDL--------VPPQGIKLTPRHYAYLKISEGCNHSCSFCIIPS 164

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSD 249
            RG  +SR +  V+DEA++L+ +GV E+ ++ Q+ +A+      R    +G   K   ++
Sbjct: 165 MRGKLVSRPVGDVLDEAQRLVKSGVKELLVISQDTSAYGVDVKYRTGFWNGAPVKTRMTE 224

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
           L  +LS +   VRL Y   +P       + A G    ++PYL +P Q  S ++LKSM R 
Sbjct: 225 LCEALSTLGVWVRLHYVYPYPHVDELIPLMAAG---KILPYLDIPFQHASPKVLKSMKRP 281

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369
               +    I   R + PD+ I S FIVGFPGET++DF+  +D + +    +   F+YSP
Sbjct: 282 AFEDKTLARIKNWREICPDLIIRSTFIVGFPGETEEDFQYLLDWLTEAQLDRVGCFQYSP 341

Query: 370 RLGTPGSNM-LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--G 426
             G P +++ LE V ++VK +R        +    +     +G+ IEVL+++  ++   G
Sbjct: 342 VEGAPANDLDLEVVPDDVKQDRWERFMAHQQAISSARLQLRIGREIEVLVDEVDEQGAVG 401

Query: 427 KLVGRSPWLQSVVL--NSKNHNIGDIIKVRITDVKISTLYGELV 468
           +    +P +   V   N  N   GD +  ++TD     L+ E +
Sbjct: 402 RCFFDAPEIDGNVFIDNGSNLKPGDKVWCKVTDADEYDLWAEQI 445


>gi|304439566|ref|ZP_07399471.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Peptoniphilus duerdenii
           ATCC BAA-1640]
 gi|304371945|gb|EFM25546.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Peptoniphilus duerdenii
           ATCC BAA-1640]
          Length = 433

 Score =  365 bits (938), Expect = 8e-99,   Method: Composition-based stats.
 Identities = 130/444 (29%), Positives = 235/444 (52%), Gaps = 16/444 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDD-ADLIVLNTCHIREKAAEKVYSF 83
           + F + + GC++N Y+S  M+++F   GY  V+S  D AD+ V+NTC +   +  K   +
Sbjct: 2   KTFSILTLGCKVNQYESEAMKEIFEKNGYIEVDSETDVADVYVVNTCTVTNLSDRKSRQY 61

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           + R +       +E  D +V V GC +Q   +E+ +    V++++G     R+ EL+E  
Sbjct: 62  IRRAK-------RENPDSIVCVVGCYSQVSPDEV-QAIEGVDIIMGTTDRSRIFELVENF 113

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           +  K  +    S++   E   I            +++ +Q+GC+++CT+C++PY RG   
Sbjct: 114 KKDKNQISIVKSLKGFTEFQHI--EIDKESEMTRSYMKVQDGCNRYCTYCIIPYARGPIR 171

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR++   V+EA++L + G  E+ L G ++ +  GK L  E+    DL+  ++++ G+ R+
Sbjct: 172 SRTIEDSVEEAKRLSEAGYKELVLTGIHIGS-YGKDLGDER--LVDLIEEITKVDGIERI 228

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R ++  P  ++   ++       +  + HL +QSGS+ +LK+MNRR+T  EY +  D IR
Sbjct: 229 RLSSIEPITITRDFLERIKATGKVCDHFHLSLQSGSNAVLKAMNRRYTREEYIETCDLIR 288

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              P + +++D IVGFPGETD+DF  T+DLV ++ +++   FKYS R GTP + M  QVD
Sbjct: 289 EYYPYVGLTTDIIVGFPGETDEDFEDTVDLVKRVEFSKIHVFKYSKRSGTPAAEMKNQVD 348

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
            N+K ER   L +   +    F +      ++VL E+  ++ G + G S       + + 
Sbjct: 349 GNIKIERSNRLLELSDKMMERFIEKNRDTKLKVLFEE--EKDGYMRGYSTNYIDCKIKTD 406

Query: 444 NHNIGDIIKVRITDVKISTLYGEL 467
                 +   +I  +   +   E+
Sbjct: 407 LELKNQVRDAKIVAIDGESAIVEI 430


>gi|327313609|ref|YP_004329046.1| 30S ribosomal protein S12 methylthiotransferase RimO [Prevotella
           denticola F0289]
 gi|326945425|gb|AEA21310.1| ribosomal protein S12 methylthiotransferase RimO [Prevotella
           denticola F0289]
          Length = 434

 Score =  365 bits (938), Expect = 8e-99,   Method: Composition-based stats.
 Identities = 121/450 (26%), Positives = 202/450 (44%), Gaps = 35/450 (7%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEKVYSFLGR 86
           + + GC  N+ DS  +   F + GY   +  +    ++ V+NTC   E A E+  + +  
Sbjct: 8   IVTMGCSKNLVDSELIMKQFEANGYHCTHDAENPQGEIAVINTCGFIEAAKEESINTILE 67

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
             N K    K G    + V GC++Q   +E+    P V+   G   Y +L   L +A   
Sbjct: 68  FANRK----KNGQLNRLYVMGCLSQRYKDELEAELPEVDKFYGKFNYKQLLSDLGKA--- 120

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
                 D    +    L+             A++ I EGCD+ C +C +P   G   SR+
Sbjct: 121 ------DIPACNGVRHLTTPHH--------YAYVKIAEGCDRHCAYCAIPLITGRHHSRT 166

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
           +  V+DE + L+  GV E  ++ Q +  + G  LDG K   ++L+  +++I+G+  +R  
Sbjct: 167 VEDVLDEVKGLVAQGVKEFQIIEQELT-YYGVDLDG-KHHITELISRMADIEGVEWIRLH 224

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
            ++P      L+        +  YL +  Q  SD +L  M+R  T  E   +I  IR   
Sbjct: 225 YAYPNQFPLDLLDVIARKPNVCKYLDIAFQHISDHMLGRMHRHVTKQETLDLIAEIRRRV 284

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP-GSNMLEQVDEN 385
           P I + +  +VGFPGET+ DF      V ++ + +  +F YS   GT   ++  + V E 
Sbjct: 285 PGIHLRTTLLVGFPGETEKDFEELKTFVREVRFERMGAFAYSEEEGTYSATHYEDDVPEK 344

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVV-- 439
           VK +R+  L K  +          VG++ +V+I++   E    +GR+    P +   V  
Sbjct: 345 VKQQRIDELMKIQQGISEELEGEKVGRVFKVIIDRT--EGEYYIGRTEFCSPEVDPEVLI 402

Query: 440 -LNSKNHNIGDIIKVRITDVKISTLYGELV 468
            +  K    G    VRITD     L+GE+V
Sbjct: 403 PIEGKTLQTGRFYDVRITDSDEFDLFGEVV 432


>gi|154175326|ref|YP_001408583.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Campylobacter
           curvus 525.92]
 gi|153793216|gb|EAU01325.2| tRNA-I(6)A37 thiotransferase enzyme MiaB [Campylobacter curvus
           525.92]
          Length = 420

 Score =  365 bits (938), Expect = 8e-99,   Method: Composition-based stats.
 Identities = 154/435 (35%), Positives = 235/435 (54%), Gaps = 20/435 (4%)

Query: 36  MNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSR 94
           MNV DS  +       + Y    ++++ADLI++NTC +REK   K++S +G     K + 
Sbjct: 1   MNVRDSEHIIAELSQKEDYTLTQNLEEADLILINTCSVREKPVHKLFSEVGAFEKAKKNG 60

Query: 95  IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDY 154
            K      + V GC A   G+EI +R+P V+ V+G +   ++   ++  +F    ++ D 
Sbjct: 61  AK------IGVCGCTASHLGDEIFKRAPYVDFVLGARNVSKISTAVKTPKFISTDINHDE 114

Query: 155 SVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEA 214
           S     E          R     + + I  GCDK CT+C+VP+TRG EIS   + ++ E 
Sbjct: 115 SEYAFGEF---------RGSPYKSHINISIGCDKKCTYCIVPHTRGDEISIPANLILREV 165

Query: 215 RKLIDNGVCEITLLGQNVNAWRGKGLDG--EKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
            K   NG  EI LLGQNVN   GK   G  EK  FSDLL  +SE+ G+ R+R+T+ HP  
Sbjct: 166 EKAATNGAKEIFLLGQNVN-NYGKRFSGAHEKIDFSDLLVRISEVAGVERIRFTSPHPLH 224

Query: 273 MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAIS 332
           M D  ++       +   +H+P+QSG+ ++L+ M R +T   +     ++R + PD++IS
Sbjct: 225 MDDKFLEIFSQNPKICKSMHMPLQSGNTKVLREMKRGYTKEWFLDRAAKLREMCPDVSIS 284

Query: 333 SDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLL 392
           +D IV FPGE+D +F  TMD+++++ + Q FSFKYSPR  T  +    Q+DE   + RL 
Sbjct: 285 TDIIVAFPGESDAEFEDTMDVLERVKFEQIFSFKYSPRPMTKAAEFTNQIDEATASARLT 344

Query: 393 CLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIK 452
            LQ +  E       A  G+I++V  E+  +  G + GRS     V +N     +G  +K
Sbjct: 345 RLQSRHNEILDEIVAAQEGKILDVYFEEL-RANGGVAGRSFNNFLVQVNGSEELLGRTLK 403

Query: 453 VRITDVKISTLYGEL 467
           V+ITD K   LYGEL
Sbjct: 404 VKITDTKRMVLYGEL 418


>gi|325262830|ref|ZP_08129566.1| 2-methylthioadenine synthetase [Clostridium sp. D5]
 gi|324031924|gb|EGB93203.1| 2-methylthioadenine synthetase [Clostridium sp. D5]
          Length = 440

 Score =  365 bits (937), Expect = 8e-99,   Method: Composition-based stats.
 Identities = 130/448 (29%), Positives = 237/448 (52%), Gaps = 32/448 (7%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++  + + GC++N Y++  M++M    GYE V   + AD+ ++NTC +   A  K    L
Sbjct: 2   KKVALHNLGCKVNAYETEAMQEMLEKAGYEIVPFKEGADIYIINTCTVTNIADRKSRQML 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R R +           +VV AGC  QA  EE     P +++V+G      L ++L+   
Sbjct: 62  HRARRM-------NPAAVVVAAGCYVQA-QEEKQEVDPCIDIVIGNNKKQDLLKILQEYE 113

Query: 145 FG--------------KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190
                           + ++D +++ E +  RLS             A++ +Q+GC++FC
Sbjct: 114 NEHAEKEAARPNAVSVREMLDINHTKEYEPLRLS------KTGEHTRAYIKVQDGCNQFC 167

Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDL 250
           ++C++P+ RG   SR+ + V++E R+L +NG  E+ L G ++++  G  L+ E  +   L
Sbjct: 168 SYCIIPFARGRVRSRAKADVLEEVRRLAENGYQEVVLTGIHLSS-YGIDLE-ETESLLSL 225

Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
           + ++ E++G+ R+R  +  PR +++  ++    L+ + P+ HL +QSG D  LK MNRR+
Sbjct: 226 IRAVHEVRGIRRIRLGSLEPRIITEEFVQELASLEKICPHFHLSLQSGCDTTLKRMNRRY 285

Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370
           ++ EY +    +R    + A+++D IVGFPGET+++F  +   VDK+ + +   FKYS R
Sbjct: 286 SSEEYFEKCLLLRKYFDNPALTTDVIVGFPGETEEEFEQSRAFVDKVDFYETHIFKYSKR 345

Query: 371 LGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG--KL 428
            GT  + M  QV E VKA+R   L     +++ ++  + +G+ +EVL E+  +  G  K 
Sbjct: 346 QGTKAAVMENQVPEQVKAQRSDNLLALNEKKRRAYEKSFIGKEVEVLFEEETEVNGSKKQ 405

Query: 429 VGRSPWLQSVVLNSKNHNIGDIIKVRIT 456
            G +     + L++  +    I+KV I 
Sbjct: 406 TGYTKEYMKIALDTDENLQNCIVKVEIE 433


>gi|304411575|ref|ZP_07393188.1| MiaB-like tRNA modifying enzyme YliG [Shewanella baltica OS183]
 gi|307306649|ref|ZP_07586391.1| MiaB-like tRNA modifying enzyme YliG [Shewanella baltica BA175]
 gi|304350102|gb|EFM14507.1| MiaB-like tRNA modifying enzyme YliG [Shewanella baltica OS183]
 gi|306910617|gb|EFN41046.1| MiaB-like tRNA modifying enzyme YliG [Shewanella baltica BA175]
          Length = 472

 Score =  365 bits (937), Expect = 8e-99,   Method: Composition-based stats.
 Identities = 132/467 (28%), Positives = 209/467 (44%), Gaps = 36/467 (7%)

Query: 15  SQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIRE 74
           +   +      R    S GC  N+ DS R+       GYE  NS  +ADL+++NTC   +
Sbjct: 23  AASTNAVTTGNRIGFVSLGCPKNLVDSERILTQLRIDGYEVTNSYANADLVIVNTCGFID 82

Query: 75  KAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYY 134
            A E+    +                  V+V GC+  A+  +I    P V  + GP +Y 
Sbjct: 83  AAVEESLDAVREALEENGK---------VIVTGCLG-AKENQIREVHPDVLEITGPHSYE 132

Query: 135 RLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCV 194
            + + + +               + F  L I   G        A+L I EGCD  CTFC+
Sbjct: 133 AVLKHVHKY--------VPKPEHNPFTSL-IPQTGVKLTPKHYAYLKISEGCDNRCTFCI 183

Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE---------KC 245
           +P  RG   SR    ++DEA++L+++GV EI ++ Q+ +A  GK   G          K 
Sbjct: 184 IPSLRGDLDSRPAGSILDEAKRLVESGVQEILVVSQDTSA-YGKDKGGRTDFWNGMPVKQ 242

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
             + L   L ++   VRL Y   +P       + A G   +++PYL +P+Q  S RILK 
Sbjct: 243 DITSLARQLGKMGAWVRLHYIYPYPWVDDLIPLMAEG---LILPYLDIPMQHASPRILKM 299

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           M R        + I R R + PD+ I S FIVGFPGET++DF+  +D + +    +   F
Sbjct: 300 MKRPGRVDRQLEAIQRWREICPDLVIRSTFIVGFPGETEEDFQILLDFLKEARLDRVGCF 359

Query: 366 KYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK 425
           KYS   G   + + E + E VK +R     +   E         VG+ +++LI+   +E 
Sbjct: 360 KYSEVDGAVANTIAELISEEVKEDRYHRFMEVQAEISAERLARFVGRTLDILIDDVDEEG 419

Query: 426 --GKLVGRSPWLQSVVLNSK--NHNIGDIIKVRITDVKISTLYGELV 468
             G+    +P +  +V  +       G +++ RIT      L+ E+V
Sbjct: 420 AIGRSFADAPEIDGMVFINGETELEPGMLVRARITHSDEHDLWAEVV 466


>gi|32476670|ref|NP_869664.1| 2-methylthioadenine synthetase [Rhodopirellula baltica SH 1]
 gi|81659389|sp|Q7UK39|RIMO_RHOBA RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|32447216|emb|CAD77042.1| conserved hypothetical protein-putative 2-methylthioadenine
           synthetase [Rhodopirellula baltica SH 1]
          Length = 477

 Score =  365 bits (937), Expect = 8e-99,   Method: Composition-based stats.
 Identities = 127/468 (27%), Positives = 223/468 (47%), Gaps = 22/468 (4%)

Query: 9   GVAHMVSQIVDQCIVPQ-RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVL 67
           G   M+     +   P+ R+ V S GC  N+ D+ +M     + GY  V+S+D AD +V+
Sbjct: 18  GTDPMIDP---ETGKPRGRYAVVSLGCPKNLVDTEQMLGRLDADGYRMVDSVDGADFVVV 74

Query: 68  NTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVV 127
           NTC   + A ++  + +  +  LK    ++G    VVV GC+A+ + +++L+  P ++ +
Sbjct: 75  NTCGFIDSARDESMAAIDEMLALK----RDGKLRNVVVTGCLAERQQDKLLQARPDIDAL 130

Query: 128 VGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCD 187
           VG      +  +++    G +   T +           +           A+L I EGCD
Sbjct: 131 VGVFGRNDIVSVVDELYSGLQEQRTIFKPAAVNPLSDAMRSAV--TPRHFAYLKISEGCD 188

Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTF 247
           + CTFC +P  RG   S+ + Q++DEA++L D+GV E+ ++ Q+   + G    GE    
Sbjct: 189 RLCTFCAIPKMRGKHFSKPIEQIIDEAKRLGDSGVREVVIVAQDTT-YYGMDRYGEP-RL 246

Query: 248 SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307
           + LL  L +I+ +  +R    +P  + D LI        ++PY+ +P+Q  SD++LK M 
Sbjct: 247 NQLLKELDKIESIDWIRLMYFYPMYIDDALIDTLASARRIVPYIDMPLQHASDKMLKRMA 306

Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           R+ T      I+ ++RS    + + +  I GFPGET++DF   MD V +  +     F Y
Sbjct: 307 RKTTRSLQTDIVQKLRSRIDSLVMRTTMITGFPGETEEDFVELMDFVQESRFENLGVFTY 366

Query: 368 SPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKG 426
           S    TP + +  +VD  V A R   L +  ++    +ND+ VG   EVLI+ +  ++  
Sbjct: 367 SIEEDTPAARLPNRVDPEVAARRRDDLMELQQQIAFDWNDSRVGGTEEVLIDAEMPEQDN 426

Query: 427 KLVGRS----PWLQSVVL-----NSKNHNIGDIIKVRITDVKISTLYG 465
             +GR+    P +  ++            +G I    I   +   L  
Sbjct: 427 VFIGRTRSEAPDVDGLIYVSQVDPDSPVEVGQIRPCEIVASQGYDLVA 474


>gi|26987932|ref|NP_743357.1| ribosomal protein S12 methylthiotransferase [Pseudomonas putida
           KT2440]
 gi|24982643|gb|AAN66821.1|AE016311_1 conserved hypothetical protein TIGR01125 [Pseudomonas putida
           KT2440]
          Length = 470

 Score =  365 bits (937), Expect = 9e-99,   Method: Composition-based stats.
 Identities = 128/469 (27%), Positives = 216/469 (46%), Gaps = 34/469 (7%)

Query: 13  MVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHI 72
           +   ++       +    S GC   + DS R+      +GYE V + +DAD++V+NTC  
Sbjct: 23  IPRLVMSTTPATPKVGFVSLGCPKALVDSERILTQLRMEGYEVVPTYEDADVVVVNTCGF 82

Query: 73  REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT 132
            + A  +    +G         IKE G   V+V GC+   EG  I    P V  V GPQ 
Sbjct: 83  IDSAKAESLEVIGEA-------IKENG--KVIVTGCMGVEEGS-IRDVHPSVLSVTGPQQ 132

Query: 133 YYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTF 192
           Y ++   +      ++  +    +        +   G        A+L I EGC+  C+F
Sbjct: 133 YEQVVNAVHEVVPPRQDHNPLIDL--------VPPQGVKLTPRHYAYLKISEGCNHSCSF 184

Query: 193 CVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--K 244
           C++P  RG  +SR + +V+ EA +L+  GV EI ++ Q+ +A+      +    +G   K
Sbjct: 185 CIIPSMRGKLVSRPVGEVLSEAERLVKAGVKEILVISQDTSAYGVDVKYKTDFWNGRPVK 244

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304
               +L  +LS +   VRL Y   +P       + A G    ++PYL +P Q  S ++LK
Sbjct: 245 TRMLELCEALSSLGAWVRLHYVYPYPNVDDVIPLMAAG---KILPYLDIPFQHASPKVLK 301

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
           SM R          I   R   P++ I S FIVGFPGET++DF+  +D + +    +   
Sbjct: 302 SMKRPAFEDRTLARIKNWREQCPELVIRSTFIVGFPGETEEDFQYLLDWLTEAQLDRVGC 361

Query: 365 FKYSPRLGTPGSNM-LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK 423
           F+YSP  G P +++ L +V ++VK ER        +    +     +G+ I+VLI++  +
Sbjct: 362 FQYSPVEGAPANDLGLAEVPDDVKQERWDRFMAHQQAISAARLQLRIGKEIDVLIDEVEE 421

Query: 424 EK--GKLVGRSPWLQSVVLNSKNH--NIGDIIKVRITDVKISTLYGELV 468
           +   G+    +P +   V    +H    GD ++ R+ D     ++ E +
Sbjct: 422 QGSVGRSFFDAPEIDGSVFIDGDHGFKPGDKVRCRVVDADEYDMWAEPI 470


>gi|304382716|ref|ZP_07365208.1| RNA modification enzyme [Prevotella marshii DSM 16973]
 gi|304336167|gb|EFM02411.1| RNA modification enzyme [Prevotella marshii DSM 16973]
          Length = 433

 Score =  365 bits (937), Expect = 9e-99,   Method: Composition-based stats.
 Identities = 125/458 (27%), Positives = 207/458 (45%), Gaps = 35/458 (7%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEK 79
           +   R  + + GC  N+ DS  +   F + GY  V+  +    ++ V+NTC   E A E+
Sbjct: 1   MKKNRIDIVTMGCSKNLVDSEILMKQFEANGYHCVHDAEHPQGEIAVINTCGFIESAKEE 60

Query: 80  VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL 139
             + +      K    KEG    + V GC++Q   +E+    P V+   G   Y +L   
Sbjct: 61  SINTILEFVQAK----KEGRLNKLFVMGCLSQRYKDELEAEIPQVDKFYGKFNYKQLLTD 116

Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           L +A                    S     +       A+L I EGCD+ C +C +P   
Sbjct: 117 LGKAEAA-----------------SCDGRRHLTTPRHYAYLKISEGCDRHCAYCAIPLMT 159

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G  +SR ++ +V+E  +L+  GV E  ++ Q +  + G  +DG     ++L+  +S+++G
Sbjct: 160 GRHVSRPMNDIVNEVEELVSIGVKEFQVIAQELT-YYGMDIDGH-LHIAELIRRISDVQG 217

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           +  +R   ++P      L+    + D +  YL + +Q  SD +L  M R  +  E  ++I
Sbjct: 218 VKWIRLHYAYPNQFPYELLDVIRERDNVCKYLDIALQHISDSMLTRMRRHVSKEETLRLI 277

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP-GSNM 378
             IR   P I + +  +VGFPGETD+DF   MD V    + +  +F YS   GT   ++ 
Sbjct: 278 RDIRRQVPGIHLRTTLMVGFPGETDEDFEELMDFVRWARFERMGAFAYSEEEGTYSATHY 337

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PW 434
            + V   VK +RL  L    ++         VG  ++V+I++  KE    VGR+    P 
Sbjct: 338 PDDVSPQVKEDRLNRLMALQQKISAEVEAEKVGCTLQVIIDR--KEGDFYVGRTEFCSPE 395

Query: 435 LQSVVLNS---KNHNIGDIIKVRITDVKISTLYGELVV 469
           +   VL S   K   IGD   V++       LYGE+V 
Sbjct: 396 VDPEVLISAGEKRLKIGDFYAVKMRAADEFDLYGEVVT 433


>gi|330836453|ref|YP_004411094.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Spirochaeta coccoides DSM
           17374]
 gi|329748356|gb|AEC01712.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Spirochaeta coccoides DSM
           17374]
          Length = 443

 Score =  365 bits (937), Expect = 9e-99,   Method: Composition-based stats.
 Identities = 145/449 (32%), Positives = 250/449 (55%), Gaps = 17/449 (3%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+ +++++YGCQMNV +S  +E M    G +  +S ++AD  +LNTC +R+ A  +++  
Sbjct: 9   PKTYWIETYGCQMNVAESHELETMLQGVGLQPASSAENADCAILNTCSVRKTAENRIWGR 68

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LG  +++K  R++      ++V GC+A+   EE+++ +P ++ VVG    +R+ ELL   
Sbjct: 69  LGLFQHIKQERLQT-----LIVTGCMAERLKEELIKEAPAIDHVVGTNDKHRIVELLTGV 123

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             G  ++D       ++E        Y++    ++F+ I  GC+ FC++C+VP+ RG EI
Sbjct: 124 ASGTCLLDGA-----RYEFGET----YHKDGDYSSFVPIMNGCNLFCSYCIVPFVRGREI 174

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS-EIKGLVR 262
           SR+   V++E R+L   GV EITLLGQ VN +R K  DG    F +LL  +  E+  +  
Sbjct: 175 SRNPQAVINEVRRLDSLGVKEITLLGQTVNNYRYKKEDGTFMRFPELLELICVELDSIRW 234

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+ + HPR  +  LI        +  +LH+P+QSGS  ILK+M R ++  ++  +I  I
Sbjct: 235 VRFESPHPRFFTRELIDVIARNPRIARHLHIPMQSGSSSILKAMMRDYSREKFLTLIADI 294

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R   PD+  ++D +VGFPGET++D+  T+  +D+    +AF + ++PR GT   ++ + V
Sbjct: 295 REKIPDVTFATDVMVGFPGETEEDYELTLSAMDECRNVEAFMYYWNPREGTKAVDLPDHV 354

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVL- 440
            E VK  RL  L  +    Q     A +G+  ++L+  H ++    L+GR+     VV  
Sbjct: 355 PETVKLARLQILIDRQLALQSVEKTARLGKDEDILVTGHSRDDKDALLGRTEHNGMVVFI 414

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELVV 469
                + GD+ +VR+  +   T  G  V+
Sbjct: 415 PYAPLHPGDVARVRLDSLSGGTFRGTHVL 443


>gi|303253419|ref|ZP_07339561.1| hypothetical protein APP2_2100 [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|307248684|ref|ZP_07530698.1| Ribosomal protein S12 methylthiotransferase rimO [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|302647663|gb|EFL77877.1| hypothetical protein APP2_2100 [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|306854895|gb|EFM87084.1| Ribosomal protein S12 methylthiotransferase rimO [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
          Length = 443

 Score =  365 bits (937), Expect = 9e-99,   Method: Composition-based stats.
 Identities = 126/463 (27%), Positives = 210/463 (45%), Gaps = 41/463 (8%)

Query: 21  CIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKV 80
              P   F+ S GC  N+ DS R+     + GY  + S ++ADL+++NTC   + A ++ 
Sbjct: 2   STTPNIGFI-SLGCPKNLVDSERILTELRTDGYNIIPSYENADLVIVNTCGFIDSAVQES 60

Query: 81  YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140
              +G                 V+V GC+  A+  +I    P V  + GP +Y  + + +
Sbjct: 61  LEAIGEALEENGK---------VIVTGCLG-AKENQIREVHPKVLEITGPHSYEAVMKHV 110

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
            +              E       +   G        A+L I EGCD  CTFC++P  RG
Sbjct: 111 HKY---------VPRPERNIYTSLVPAQGVKLTPKHYAYLKISEGCDHRCTFCIIPSMRG 161

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNV----------NAWRGKGLDGE--KCTFS 248
              SR + QV+DEA++L D+GV E+ ++ Q+           N  +    +G   K    
Sbjct: 162 DLDSRPIVQVLDEAKRLADSGVKELLIVSQDTSAYALDQSKENQNKTVFWNGAPIKNNLI 221

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
            L   L  +   VRL Y   +        + A G    ++PYL +P+Q  S ++LK+M R
Sbjct: 222 TLCEQLGSLGIWVRLHYVYPYSHVDDLIPLMAQG---KILPYLDIPLQHASPKVLKAMKR 278

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
                   + I + R + P++ + S FIVGFPGET++DF+  +D +++    +   FK+S
Sbjct: 279 PGAIDRTLERIKKWREICPELTLRSTFIVGFPGETEEDFQMLLDFLEEAQLDRVGCFKFS 338

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--G 426
           P  G   + M +QV E+VK ER     +  +    +     VG+ + V+I++  +E   G
Sbjct: 339 PVEGAVATEMADQVPEDVKEERFHRFMQVQQRISAARLQQKVGKTLAVIIDEIDEEGIIG 398

Query: 427 KLVGRSPWLQSVVLNSK----NHNIGDIIKVRITDVKISTLYG 465
           + +  +P +  VV           +G +I V IT+     L+G
Sbjct: 399 RSMADAPEIDGVVYVDNLSEQEVKVGQVISVSITNADEYDLWG 441


>gi|217031489|ref|ZP_03436994.1| hypothetical protein HPB128_21g47 [Helicobacter pylori B128]
 gi|216946689|gb|EEC25285.1| hypothetical protein HPB128_21g47 [Helicobacter pylori B128]
          Length = 430

 Score =  365 bits (937), Expect = 9e-99,   Method: Composition-based stats.
 Identities = 142/442 (32%), Positives = 237/442 (53%), Gaps = 23/442 (5%)

Query: 33  GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92
           GC MN  DS  +        Y+  +    ADLI++NTC +REK   K++S +G+   +K 
Sbjct: 2   GCAMNSRDSEHLLSELSKLDYKETSDPKTADLILINTCSVREKPERKLFSEIGQFAKIKK 61

Query: 93  SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDT 152
                  +  + V GC A   G +IL+++P V+ V+G +   ++ +++ R +  +  +D 
Sbjct: 62  ------PNAKIGVCGCTASHMGADILKKAPSVSFVLGARNVSKISQVIHREKAVEVAIDY 115

Query: 153 DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVD 212
           D S        +     + +K  + + L I  GCDK C +C+VP+TRG EIS  +  ++ 
Sbjct: 116 DES--------AYAFEFFEKKAQIRSLLNISIGCDKKCAYCIVPHTRGKEISIPMDLILR 167

Query: 213 EARKLIDNGVCEITLLGQNVNAWRGKGL-DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPR 271
           EA KL +NG  E+ LLGQNVN +  +   +  K  FSDLL  LSEI+G+ R+R+T+ HP 
Sbjct: 168 EAEKLANNGTKELMLLGQNVNNYGARFSSEHAKVDFSDLLDKLSEIQGIERIRFTSPHPL 227

Query: 272 DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAI 331
            M+D  ++       +   +H+P+QSGS  +LK M R ++   +   ++R++++ P++ I
Sbjct: 228 HMNDRFLERFAKNPKVCKSIHMPLQSGSSAVLKMMRRGYSKEWFLNRVERLKALVPEVGI 287

Query: 332 SSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERL 391
           S+D IVGFP E+D DF  TM++++K+ +   +SF YSPR  T      E+V   V + RL
Sbjct: 288 STDIIVGFPNESDKDFEDTMEVLEKVRFDTLYSFIYSPRPFTEAGAWKERVPLEVSSSRL 347

Query: 392 LCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV---GRSPWLQSVVLN-SKNHNI 447
             LQ + +E         VG+   VL+E   +   ++V   GRS   + + +   +  N 
Sbjct: 348 ERLQNRHKEILEEKAKLEVGKTHVVLVENRREMDDQIVGFEGRSDTGKFIEVACKEKRNP 407

Query: 448 GDIIKVRITDVKISTLYGELVV 469
           G++++V I         G L+ 
Sbjct: 408 GELVRVEIVSHS----KGRLIA 425


>gi|325528907|gb|EGD05942.1| ribosomal protein S12 methylthiotransferase [Burkholderia sp.
           TJI49]
          Length = 453

 Score =  365 bits (937), Expect = 9e-99,   Method: Composition-based stats.
 Identities = 129/469 (27%), Positives = 212/469 (45%), Gaps = 48/469 (10%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC   + DS ++     ++GYE   + D ADL+V+NTC   ++A ++    +G
Sbjct: 6   KVGFVSLGCPKALVDSEQIITQLRAEGYEISGTYDGADLVVVNTCGFIDEAVQESLDAIG 65

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCV---AQAEGEEILRR-SPIVNVVVGPQTYYRLPELLE 141
                            V+V GC+   A A G  ++    P V  V GP     + + + 
Sbjct: 66  EALTENGK---------VIVTGCLGAKASASGANLIEEVHPKVLAVTGPHAVGEVMQAVH 116

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
                           D F  L    G     R   A+L I EGC+  CTFC++P  RG 
Sbjct: 117 SHLP---------KPHDPFVDLVPAAGIKLTPRHY-AYLKISEGCNHRCTFCIIPSMRGD 166

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYS 253
            +SR +++V+ EA  L  +GV E+ ++ Q+ +A+      R    +G+  K   +DL+ +
Sbjct: 167 LVSRPVAEVMLEAENLFKSGVKELLVISQDTSAYGVDVKYRTGFWNGKPIKTRMTDLVAA 226

Query: 254 LSEI----KGLVRLRYTTSHPRDMSDCLIKAHGDLD-VLMPYLHLPVQSGSDRILKSMNR 308
           L E+       VRL Y   +P       + A G     ++PYL +P Q     +LK M R
Sbjct: 227 LGELAAQYGAWVRLHYVYPYPSVDEVIPLMAEGPFKGHVLPYLDVPFQHAHPEVLKRMKR 286

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
              A +  + + + R + PD+ I S FI GFPGET++ F   +D + +    +   F YS
Sbjct: 287 PANAEKVLERVQKWREICPDLTIRSTFIAGFPGETEEQFETLLDFIREAELDRVGCFAYS 346

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL 428
           P  G   + +   + ++V+ ER     +   E      +  VG+ ++VLI++   E G  
Sbjct: 347 PVEGASANELDGALPDDVREERRARFMEVAEEVSAKRMERKVGKTVKVLIDEVSAEGG-- 404

Query: 429 VGRS----PWLQSVVLN------SKNHNIGDIIKVRITDVKISTLYGEL 467
           +GR+    P +  VV        SK + +GD + V+IT      L+GE+
Sbjct: 405 IGRTAADAPEIAGVVYVEPATKASKRYKVGDFVSVKITGADGHDLWGEV 453


>gi|291295449|ref|YP_003506847.1| MiaB-like tRNA modifying enzyme YliG [Meiothermus ruber DSM 1279]
 gi|290470408|gb|ADD27827.1| MiaB-like tRNA modifying enzyme YliG [Meiothermus ruber DSM 1279]
          Length = 458

 Score =  365 bits (937), Expect = 9e-99,   Method: Composition-based stats.
 Identities = 132/457 (28%), Positives = 220/457 (48%), Gaps = 38/457 (8%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC   + DS ++     +QGYE   +  +AD++V+NTC     A E+  + +G
Sbjct: 4   KVGFVSLGCPKALVDSEQILSRLRAQGYETSPTYQEADVVVVNTCGFITPAVEESLTAIG 63

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
              +             V+V GC+     E I +  P V  V GP    R+   ++R   
Sbjct: 64  EALSENGK---------VIVTGCLGAR-PEVIQQAHPQVLEVTGPGEVDRVLAAVQRV-- 111

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                       ++    ++V           A+L I EGC+  C+FC++P  RG++ SR
Sbjct: 112 ---------VPLEQNPFTALVPPQVKLTPRHYAYLKIAEGCNHKCSFCIIPKLRGLQQSR 162

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNA------WRGKGLDGE--KCTFSDLLYSLSEI 257
             ++++ EA +L+  G  E+ ++ Q+ +A       R     G+  +    DL+  L+ +
Sbjct: 163 DAAEILFEATRLVGTGTKELLVIAQDTSAYGVDIRHRTSDYAGKQVRAHLVDLVNELAGL 222

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
              +RL Y   +P       + A G    L+PYL +P+Q  S R+L++M R   A  + +
Sbjct: 223 GAWLRLHYVYPYPHVRDLIPLMAEG---KLLPYLDVPLQHASPRVLRAMRRPGGAESHLK 279

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
            I   R++ PD+AI S FIVGFPGET++DF   +D + +    +   F YS   G   ++
Sbjct: 280 TIQEWRAIAPDLAIRSSFIVGFPGETEEDFELLLDFIAEARLDRVGCFTYSEVEGADANS 339

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----P 433
           +   V + VK ER   L    ++  +  N A +GQ +EV+++ +G+  G +VGRS    P
Sbjct: 340 LPGAVPQEVKEERRARLMALQQQISLEKNQARLGQTLEVIVDDYGELPGLVVGRSRYDAP 399

Query: 434 WLQSVVL--NSKNHNIGDIIKVRITDVKISTLYGELV 468
            +  +V         IGDII+VRIT  +   L+GE+V
Sbjct: 400 GIDGLVYAETDGTVKIGDIIQVRITQAEAYDLHGEMV 436


>gi|301163425|emb|CBW22976.1| putative oxidoreductase [Bacteroides fragilis 638R]
          Length = 432

 Score =  365 bits (937), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 116/454 (25%), Positives = 209/454 (46%), Gaps = 35/454 (7%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDA--DLIVLNTCHIREKAAEKVYS 82
           +   + + GC  N+ DS ++       GY+  +  +    ++ V+NTC     A E+  +
Sbjct: 4   KTIDIITLGCSKNLVDSEQLMRQLEEAGYDVTHDSEKPTGEIAVINTCGFIGDAKEESIN 63

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +      K      G    + V GC+++   +E+    P V+   G   +  L + L +
Sbjct: 64  MILEFAQEKEE----GNLEKLFVMGCLSERYLKELAIEIPQVDKFYGKFNWKGLLQDLGK 119

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           A          Y  E   ER       Y       A+L I EGCD+ C++C +P   G  
Sbjct: 120 A----------YHEELHIERTLTTPKHY-------AYLKISEGCDRKCSYCAIPIITGRH 162

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR + +++DE R L+ NGV E  ++ Q +  + G  L  +K    +L+  +SEI G+  
Sbjct: 163 VSRPIEEILDEVRYLVSNGVKEFQVIAQELT-YYGVDLY-KKQMLPELIERISEIPGVEW 220

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R   ++P      L +   + D +  Y+ + +Q  SD +L+ M R  T  E  ++I++ 
Sbjct: 221 IRLHYAYPAHFPKELFRVMRERDNVCKYMDIALQHISDNMLQRMRRHVTKKETYRLIEQF 280

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT-PGSNMLEQ 381
           R   P I + +  +VG PGET++DF    + V K+ + +  +F YS   GT   +N  + 
Sbjct: 281 RKEVPGIHLRTTLMVGHPGETEEDFEELKEFVRKVRFDRMGAFTYSEEEGTYAAANYEDS 340

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQS 437
           + + +K  RL  L    +      + + VGQ ++V+I++   E    +GR+    P +  
Sbjct: 341 IPQELKQARLDELMAIQQGISTELSASKVGQKMKVIIDRI--EGEYYIGRTEFDSPEVDP 398

Query: 438 VVL---NSKNHNIGDIIKVRITDVKISTLYGELV 468
            VL      N  IG+  +V++ D     L+GE++
Sbjct: 399 EVLIRCEGDNLMIGNFYQVQVIDSDEFDLFGEII 432


>gi|157412457|ref|YP_001483323.1| Fe-S oxidoreductase [Prochlorococcus marinus str. MIT 9215]
 gi|238066594|sp|A8G2A6|RIMO_PROM2 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|157387032|gb|ABV49737.1| possible Fe-S oxidoreductase [Prochlorococcus marinus str. MIT
           9215]
          Length = 454

 Score =  365 bits (937), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 121/451 (26%), Positives = 219/451 (48%), Gaps = 26/451 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +      GC+ N+ D+  M+ +   +GYE  +++++A+++V+NTC   + A E+    + 
Sbjct: 15  KVAFSHVGCEKNLVDTEHMQGLLDKEGYEVDSNINEANVVVVNTCSFIQTAREESIRKIL 74

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                            V+VAGC+AQ   +E+++  P +  ++G   Y ++ ++L+R   
Sbjct: 75  EY---------TNQGKEVIVAGCMAQHFKDELIKEIPEIKGLIGTGDYQKIAKVLDRVEK 125

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G+ V +     E   +        +  K    A+L I EGC+  C FC++P  RG + SR
Sbjct: 126 GEIVNEVSKIPEFIADEEIP---RFVDKNKFVAYLRIAEGCNYNCAFCIIPKLRGPQRSR 182

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           ++  +V EA+ L   G+ EI L+ Q +    G+ + G K + + LL  LS++  +  +R 
Sbjct: 183 TIESIVSEAKSLAKQGIQEIILISQ-ITTNYGQDIYG-KPSLAKLLNELSKVP-IPWIRI 239

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
             ++P  ++D +I+A  D   ++PY  LP+Q     +LKSMNR   A     I+++IR  
Sbjct: 240 HYAYPTGLTDQVIRAFKDSKNIVPYFDLPLQHSHPDVLKSMNRPWQASLNESILEKIREE 299

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P   + +  IVGFPGE  + F   ++ +D+  +     F +SP +GT   ++  +V   
Sbjct: 300 IPSAVLRTSLIVGFPGEKKEHFEHLLEFLDRHKFDHVGVFIFSPEVGTAAFDLPNKVSPE 359

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVLN 441
           V   R   +    +      N + VG  +++L+EK   +  +L+GRS    P +   V+ 
Sbjct: 360 VAEARKDNVISVQQNISKDKNQSYVGSKMKILVEKIS-DNNELIGRSYNFAPEIDGTVIL 418

Query: 442 SKNHNI------GDIIKVRITDVKISTLYGE 466
           S    I      G  ++  I+      LYGE
Sbjct: 419 SVKDKIDLKNYSGKFVEANISFADEYDLYGE 449


>gi|53802700|ref|YP_112621.1| MiaB-like tRNA modifying enzyme YliG [Methylococcus capsulatus str.
           Bath]
 gi|81683237|sp|Q60CM4|RIMO_METCA RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|53756461|gb|AAU90752.1| MiaB-like tRNA modifying enzyme YliG [Methylococcus capsulatus str.
           Bath]
          Length = 437

 Score =  365 bits (937), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 127/454 (27%), Positives = 204/454 (44%), Gaps = 35/454 (7%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R    S GC   + DS R+     ++GY  V +  DADL+V+NTC   + A E+    +G
Sbjct: 5   RIGFISLGCPKALVDSERIITQLRAEGYAIVPTYQDADLVVVNTCGFIDAAVEESLEAIG 64

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                            V+V GC+ +   EEI  R P V  V G   Y  +   +     
Sbjct: 65  EAVAENGK---------VIVTGCLGER-PEEIQARHPAVLKVTGAHAYEEVMNAVHEHLP 114

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                     + D F  L +   G        A+L I EGC+  C+FC++P  RG  +SR
Sbjct: 115 ---------PLHDPFMDL-VPPQGVRLTPRHYAYLKISEGCNHRCSFCIIPALRGDLVSR 164

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAW-----RGKGLDGEKCT---FSDLLYSLSEI 257
            + +V+ EA +L+  GV EI ++ Q+ +A+        G  G +     F +L  +L ++
Sbjct: 165 PIGEVMTEAERLVAAGVKEILVVSQDTSAYGADLGYRTGFWGGRPLRTRFQELARALGDL 224

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
              +RL Y   +P       + A G    L+PYL +P Q  S R+LK+M R         
Sbjct: 225 GVWIRLHYVYPYPHVDEVIPLMAEG---RLLPYLDIPFQHASARVLKAMKRPAATENILA 281

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
            I R R V P++ + S FIVGFPGET+D+FR  +D +++    +   F+YSP  G   + 
Sbjct: 282 AIRRWREVCPELTLRSTFIVGFPGETEDEFRELLDFLEEARLDRVGCFEYSPVKGAAANA 341

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPWL 435
           + + V   VKAER   L +       +     +G+   VL+++  +E    +    +P +
Sbjct: 342 LPDPVPAEVKAERHARLMEVQERISAARLRTRIGRTETVLVDEVVEEGAVARRRADAPEI 401

Query: 436 QS-VVLNSKNHN-IGDIIKVRITDVKISTLYGEL 467
              V ++   H  +G+ ++    D     L+  L
Sbjct: 402 DGQVFIDGATHLEVGEFVEATFEDADAHDLWARL 435


>gi|332655310|ref|ZP_08421050.1| 2-methylthioadenine synthetase [Ruminococcaceae bacterium D16]
 gi|332515815|gb|EGJ45425.1| 2-methylthioadenine synthetase [Ruminococcaceae bacterium D16]
          Length = 451

 Score =  365 bits (937), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 127/455 (27%), Positives = 217/455 (47%), Gaps = 24/455 (5%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           ++P +    S GC  N+ ++ +M  +    G+      + AD+ VLNTC   E A  +  
Sbjct: 10  MMPYKIAFVSLGCAKNLVNTEQMMALCRKAGHTVTGEPEGADVAVLNTCGFIESAKSEAI 69

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             +  +  LK     +G    ++VAGC+ Q   ++I +  P V+ ++G  +Y  +   +E
Sbjct: 70  ENILELAQLKQ----DGKLKKLLVAGCLTQRYPDDIRKELPEVDGMLGTGSYTDVVTAVE 125

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNR---KRGVTAFLTIQEGCDKFCTFCVVPYT 198
               G+R         + FER+        R       TA+L I EGC   C FC++P  
Sbjct: 126 ELMAGERP--------EHFERIDRAYDDGERMVTTPPYTAYLKIAEGCSNGCAFCIIPKL 177

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258
           RG   SR++  +++EA+ L D+GV E+ ++ Q++    G  L G+  T + LL  L ++ 
Sbjct: 178 RGRYRSRTMDHLLEEAKSLADSGVKELIVIAQDIT-RYGSDL-GDGTTLAGLLKELCKLP 235

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
               +R    +P  ++D L++       ++ YL +P+Q  +D ILK+M RR+T  E  ++
Sbjct: 236 -FHWIRLHYLYPEAITDELVEVIASEKKIVHYLDIPIQHCNDGILKAMRRRNTKVELEEL 294

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
             R+R   PD+ I +  I G PGE + +F    + + +    +A  F++SP  GT    M
Sbjct: 295 FARLRKAIPDVVIRTSLICGLPGEGEAEFEELCEFLKEQKLQRAGVFQFSPEEGTLAEKM 354

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSP----W 434
             QVD +V A R+  +          +N+  +G ++EVL E    + G  VGR+      
Sbjct: 355 ENQVDPDVAARRVELVVDLQSRIMDEYNEERLGTVMEVLCEGFDSQAGCFVGRTYADSVE 414

Query: 435 LQS-VVLNSKNHNI-GDIIKVRITDVKISTLYGEL 467
           +   V   +      G+ + VRIT V    L GE+
Sbjct: 415 IDGHVYFTAAGLVPAGEFVHVRITGVSDGDLTGEI 449


>gi|325981563|ref|YP_004293965.1| MiaB-like tRNA modifying enzyme YliG [Nitrosomonas sp. AL212]
 gi|325531082|gb|ADZ25803.1| MiaB-like tRNA modifying enzyme YliG [Nitrosomonas sp. AL212]
          Length = 459

 Score =  365 bits (937), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 126/460 (27%), Positives = 210/460 (45%), Gaps = 41/460 (8%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           Q+    S GC   + DS ++     ++GYE   S  DADL+V+NTC   + A E+    +
Sbjct: 9   QKVGFVSLGCPKALVDSEQILTQLRAEGYEISASYQDADLVVVNTCGFIDSAVEESLDAI 68

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCV-AQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           G                 V+V GC+ A+ +G+ + +  P V  V GP     +   +   
Sbjct: 69  GEALAENGK---------VIVTGCLGAKEDGDVVKKAHPHVLAVTGPHALPEVMSAIHTH 119

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
                         D +  L I   G        A++ I EGC+  CTFC++P  RG  +
Sbjct: 120 LP---------QPHDPYTSL-IPPQGIRLTPKHYAYVKISEGCNHRCTFCIIPSMRGGLV 169

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE---------KCTFSDLLYSL 254
           SR + QV+ EA  L++ GV E+ ++ Q+ +A  G  +            K   ++L ++L
Sbjct: 170 SRPIHQVMQEAEHLVNAGVKELLIISQDTSA-YGVDVKYRTGFWQGRPVKTRLTELAHAL 228

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
             +   VRL Y   +P   +   + A G    ++PYL +P Q  + RILK M R  +A  
Sbjct: 229 GSLGVWVRLHYVYPYPHVDAIIPLMAEG---KILPYLDVPFQHANPRILKMMKRPASAEN 285

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
               I + R++ PDI + S FIVGFPGET+ +F   +  + +    +   F YSP  G  
Sbjct: 286 NLARIQQWRNICPDITLRSTFIVGFPGETEAEFEDLLAFLQEAQLDRVGCFTYSPVAGAT 345

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS-- 432
            + + + + E +K ER     ++  E       A VG  + V+I++      +++ RS  
Sbjct: 346 ANQLSDHIPEAIKQERRARFMQQQEEISRQRLAAKVGHTMTVMIDELT--GSQVIARSSA 403

Query: 433 --PWLQSVVL--NSKNHNIGDIIKVRITDVKISTLYGELV 468
             P +  VV   N+++   G++I V+IT      L+  ++
Sbjct: 404 DAPDIDGVVYVENAEHLQPGELIDVQITGSNAHDLFAVML 443


>gi|297538125|ref|YP_003673894.1| MiaB-like tRNA modifying enzyme YliG [Methylotenera sp. 301]
 gi|297257472|gb|ADI29317.1| MiaB-like tRNA modifying enzyme YliG [Methylotenera sp. 301]
          Length = 445

 Score =  365 bits (936), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 128/457 (28%), Positives = 203/457 (44%), Gaps = 40/457 (8%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC     D+ R+     ++GYE   S +DADL+V+NTC   + A E+    +G
Sbjct: 7   KVGFVSLGCPKAGSDAERILTQLRAEGYEISGSYEDADLVVVNTCGFIDSAVEESLDAIG 66

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                            V+V GC+   +G  +    P V  V GP     +   +     
Sbjct: 67  EAIAKNGK---------VIVTGCLGAKKG-VVEAAHPSVLAVTGPHALEEVMTAVHANLP 116

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                     + + F  L +   G        A+L I EGC+  C+FC++P  RG  +SR
Sbjct: 117 ---------KLHEPFIDL-VPPQGIRLTPSHYAYLKISEGCNHRCSFCIIPSMRGDLVSR 166

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYSLSEI 257
            + +V++EA  L+  GV EI ++ Q+ +A+      R    +G   K   ++L  SLS++
Sbjct: 167 PIGEVLNEAENLVKAGVSEILVISQDTSAYGVDVKYRPGFWNGRPVKTRMTELCQSLSDL 226

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
               RL Y   +P       + A G   +++PYL +P Q  S RILK+M R   A     
Sbjct: 227 GVWTRLHYVYPYPHVDEVIPLMADG---LILPYLDVPFQHASPRILKAMKRPAHAENNLA 283

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
            I   R + PDI + S FI GFPGET+DDF+  +D +++    +   F YS   G   + 
Sbjct: 284 RIKAWREICPDITVRSTFIAGFPGETEDDFQMLLDFLEEAQLDRVGCFAYSAVDGAKANE 343

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK---HGKEKGKLVGRS-- 432
           + +QV E VK ERL    +       +     +G I  VL+++     +   + +GR+  
Sbjct: 344 LPDQVPEEVKQERLSRFMEVQERISAAKLHNKIGSIQTVLVDEIVQDSEGNIEAIGRTKA 403

Query: 433 --PWLQSVVL--NSKNHNIGDIIKVRITDVKISTLYG 465
             P +  VV   ++     GD ++V I       L G
Sbjct: 404 DAPEIDGVVYMEDADGLTPGDFVEVEIYSADGHDLRG 440


>gi|113971781|ref|YP_735574.1| ribosomal protein S12 methylthiotransferase [Shewanella sp. MR-4]
 gi|114046009|ref|YP_736559.1| ribosomal protein S12 methylthiotransferase [Shewanella sp. MR-7]
 gi|123130058|sp|Q0HEK0|RIMO_SHESM RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|123326922|sp|Q0HZF3|RIMO_SHESR RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|113886465|gb|ABI40517.1| MiaB-like tRNA modifying enzyme YliG [Shewanella sp. MR-4]
 gi|113887451|gb|ABI41502.1| MiaB-like tRNA modifying enzyme YliG [Shewanella sp. MR-7]
          Length = 476

 Score =  365 bits (936), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 135/467 (28%), Positives = 209/467 (44%), Gaps = 36/467 (7%)

Query: 15  SQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIRE 74
           +   D      R    S GC  N+ DS R+       GYE  NS D+ADL+++NTC   +
Sbjct: 23  AASADSTATGNRIGFVSLGCPKNLVDSERILTQLRIDGYEVTNSYDNADLVIVNTCGFID 82

Query: 75  KAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYY 134
            A E+    +                  V+V GC+  A+  +I    P V  + GP +Y 
Sbjct: 83  AAVEESLDAVREALEENGK---------VIVTGCLG-AKENQIREVHPDVLEITGPHSYE 132

Query: 135 RLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCV 194
            + + + +               + F  L I   G        A+L I EGCD  CTFC+
Sbjct: 133 AVLKHVHKY--------VPKPEHNPFTSL-IPQTGVKLTPKHYAYLKISEGCDNRCTFCI 183

Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE---------KC 245
           +P  RG   SR    V+DEA++L+++GV EI ++ Q+ +A  GK   G          K 
Sbjct: 184 IPALRGDLDSRPAGSVLDEAKRLVESGVQEILVVSQDTSA-YGKDKGGRTDFWNGMPVKQ 242

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
             + L   L ++   VRL Y   +P       + A G   +++PYL +P+Q  S RILK 
Sbjct: 243 DITSLARQLGKMGAWVRLHYIYPYPWVDDLIPLMAEG---LILPYLDIPMQHASPRILKM 299

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           M R        + I R R + PD+ I S FIVGFPGET++DF   +D + +    +   F
Sbjct: 300 MKRPGRVDRQLEAIQRWREICPDLVIRSTFIVGFPGETEEDFEMLLDFLREARLDRVGCF 359

Query: 366 KYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK 425
           KYS   G   + + E + E+VK +R     +   E         VG+ +++LI+   +E 
Sbjct: 360 KYSEVEGAVANTIAELISEDVKEDRYHRFMEVQAEISAERLARFVGRTMDILIDDVDEEG 419

Query: 426 --GKLVGRSPWLQSVVLNSK--NHNIGDIIKVRITDVKISTLYGELV 468
             G+    +P +  +V  +       G +++  IT      L+ ELV
Sbjct: 420 AIGRSFADAPEIDGMVFINGETELEPGMLVRAVITHSDEHDLWAELV 466


>gi|126175991|ref|YP_001052140.1| ribosomal protein S12 methylthiotransferase [Shewanella baltica
           OS155]
 gi|217971749|ref|YP_002356500.1| ribosomal protein S12 methylthiotransferase [Shewanella baltica
           OS223]
 gi|238066597|sp|A3D958|RIMO_SHEB5 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|125999196|gb|ABN63271.1| MiaB-like tRNA modifying enzyme YliG [Shewanella baltica OS155]
 gi|217496884|gb|ACK45077.1| MiaB-like tRNA modifying enzyme YliG [Shewanella baltica OS223]
          Length = 472

 Score =  365 bits (936), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 132/467 (28%), Positives = 210/467 (44%), Gaps = 36/467 (7%)

Query: 15  SQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIRE 74
           +   +      R    S GC  N+ DS R+       GYE  NS  +ADL+++NTC   +
Sbjct: 23  AASTNAVTTGNRIGFVSLGCPKNLVDSERILTQLRIDGYEVTNSYANADLVIVNTCGFID 82

Query: 75  KAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYY 134
            A E+    +                  V+V GC+  A+  +I    P V  + GP +Y 
Sbjct: 83  AAVEESLDAVREALEENGK---------VIVTGCLG-AKENQIREVHPDVLEITGPHSYE 132

Query: 135 RLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCV 194
            + + + +               + F  L I   G        A+L I EGCD  CTFC+
Sbjct: 133 AVLKHVHKY--------VPKPEHNPFTSL-IPQTGVKLTPKHYAYLKISEGCDNRCTFCI 183

Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE---------KC 245
           +P  RG   SR    ++DEA++L+++GV EI ++ Q+ +A  GK   G          K 
Sbjct: 184 IPSLRGDLDSRPAGSILDEAKRLVESGVQEILVVSQDTSA-YGKDKGGRTDFWNGMPVKQ 242

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
             + L   L ++   VRL Y   +P       + A G   +++PYL +P+Q  S RILK 
Sbjct: 243 DITSLARQLGKMGAWVRLHYIYPYPWVDDLIPLMAEG---LILPYLDIPMQHASPRILKM 299

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           M R        + I R R + PD+ I S FIVGFPGET++DF+  +D + +    +   F
Sbjct: 300 MKRPGRVDRQLEAIQRWREICPDLVIRSTFIVGFPGETEEDFQILLDFLKEARLDRVGCF 359

Query: 366 KYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK 425
           KYS   G   + + E + E+VK +R     +   E         VG+ +++LI+   +E 
Sbjct: 360 KYSEVDGAVANTIAELISEDVKEDRYHRFMEVQAEISAERLARFVGRTLDILIDDVDEEG 419

Query: 426 --GKLVGRSPWLQSVVLNSK--NHNIGDIIKVRITDVKISTLYGELV 468
             G+    +P +  +V  +       G +++ RIT      L+ E+V
Sbjct: 420 AIGRSFADAPEIDGMVFINGETELEPGMLVRARITHSDEHDLWAEVV 466


>gi|253565664|ref|ZP_04843119.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|265764040|ref|ZP_06092608.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacteroides sp. 2_1_16]
 gi|251945943|gb|EES86350.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|263256648|gb|EEZ27994.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacteroides sp. 2_1_16]
          Length = 432

 Score =  365 bits (936), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 116/454 (25%), Positives = 210/454 (46%), Gaps = 35/454 (7%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDA--DLIVLNTCHIREKAAEKVYS 82
           +   + + GC  N+ DS ++       GY+  +  +    ++ V+NTC     A E+  +
Sbjct: 4   KTIDIITLGCSKNLVDSEQLMRQLEEAGYDVTHDSEKPTGEIAVINTCGFIGDAKEESIN 63

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +      K      G    + V GC+++   +E+    P V+   G   +  L + L +
Sbjct: 64  MILEFAQEKEE----GNLEKLFVMGCLSERYLKELAIEIPQVDKFYGKFNWKGLLQDLGK 119

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           A          Y  E   ER       Y       A+L I EGCD+ C++C +P   G  
Sbjct: 120 A----------YHEELHIERTLTTPKHY-------AYLKISEGCDRKCSYCAIPIITGRH 162

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR + +++DE R L+ NGV E  ++ Q +  + G  L  +K    +L+  +SEI G+  
Sbjct: 163 VSRPIEEILDEVRYLVSNGVKEFQVIAQELT-YYGVDLY-KKQMLPELIERISEIPGVEW 220

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R   ++P    + L +   + D +  Y+ + +Q  SD +L+ M R  T  E  ++I++ 
Sbjct: 221 IRLHYAYPAHFPEELFRVMRERDNVCKYMDIALQHISDNMLQRMRRHVTKKETYRLIEQF 280

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT-PGSNMLEQ 381
           R   P I + +  +VG PGET++DF    + V K+ + +  +F YS   GT   +N  + 
Sbjct: 281 RKEVPGIHLRTTLMVGHPGETEEDFEELKEFVRKVRFDRMGAFTYSEEEGTYAAANYEDS 340

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQS 437
           + + +K  RL  L    +      + + VGQ ++V+I++   E    +GR+    P +  
Sbjct: 341 IPQELKQARLDELMAIQQGISTELSASKVGQKMKVIIDRI--EGEYYIGRTEFDSPEVDP 398

Query: 438 VVL---NSKNHNIGDIIKVRITDVKISTLYGELV 468
            VL      N  IG+  +V++ D     L+GE++
Sbjct: 399 EVLIRCEGDNLMIGNFYQVQVIDSDEFDLFGEII 432


>gi|53729279|ref|ZP_00133809.2| COG0621: 2-methylthioadenine synthetase [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|126209100|ref|YP_001054325.1| hypothetical protein APL_1636 [Actinobacillus pleuropneumoniae L20]
 gi|307250930|ref|ZP_07532857.1| Ribosomal protein S12 methylthiotransferase rimO [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|238065276|sp|A3N2T4|RIMO_ACTP2 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|126097892|gb|ABN74720.1| hypothetical protein APL_1636 [Actinobacillus pleuropneumoniae
           serovar 5b str. L20]
 gi|306857062|gb|EFM89191.1| Ribosomal protein S12 methylthiotransferase rimO [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
          Length = 443

 Score =  365 bits (936), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 127/463 (27%), Positives = 210/463 (45%), Gaps = 41/463 (8%)

Query: 21  CIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKV 80
              P   F+ S GC  N+ DS R+     + GY  + S ++ADL+++NTC   + A ++ 
Sbjct: 2   STTPNIGFI-SLGCPKNLVDSERILTELRTDGYNIIPSYENADLVIVNTCGFIDSAVQES 60

Query: 81  YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140
              +G                 V+V GC+  A+  +I    P V  + GP +Y  + + +
Sbjct: 61  LEAIGEALEENGK---------VIVTGCLG-AKENQIREVHPKVLEITGPHSYEAVMKHV 110

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
            +              E       +   G        A+L I EGCD  CTFC++P  RG
Sbjct: 111 HKY---------VPRPERNIYTSLVPAQGVKLTPKHYAYLKISEGCDHRCTFCIIPSMRG 161

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNV----------NAWRGKGLDGE--KCTFS 248
              SR + QV+DEA++L D+GV E+ ++ Q+           N  +    +G   K    
Sbjct: 162 DLDSRPIVQVLDEAKRLADSGVKELLIVSQDTSAYALDQSKENQNKTVFWNGAPIKNNLI 221

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
            L   L  +   VRL Y   +P       + A G    ++PYL +P+Q  S ++LK+M R
Sbjct: 222 TLCEQLGSLGIWVRLHYVYPYPHVDDLIPLMAQG---KILPYLDIPLQHASPKVLKAMKR 278

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
                   + I + R + P + + S FIVGFPGET++DF+  +D +++    +   FK+S
Sbjct: 279 PGAIDRTLERIKKWREICPKLTLRSTFIVGFPGETEEDFQMLLDFLEEAQLDRVGCFKFS 338

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--G 426
           P  G   + M +QV E+VK ER     +  +    +     VG+ + V+I++  +E   G
Sbjct: 339 PVEGAVATEMADQVPEDVKEERFHRFMQVQQRISAARLQQKVGKTLAVIIDEIDEEGIIG 398

Query: 427 KLVGRSPWLQSVVLNSK----NHNIGDIIKVRITDVKISTLYG 465
           + +  +P +  VV           +G +I V IT+     L+G
Sbjct: 399 RSMADAPEIDGVVYVDNLSEQEVKVGQVISVSITNADEYDLWG 441


>gi|313238118|emb|CBY13216.1| unnamed protein product [Oikopleura dioica]
          Length = 425

 Score =  365 bits (936), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 110/443 (24%), Positives = 200/443 (45%), Gaps = 20/443 (4%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           +     + S GC  N+ DS  M       G       + AD++++NTC   + A ++   
Sbjct: 1   MSTTVGLISLGCAKNLIDSEVMIGHLAQAGMSLTPDPELADVLIVNTCSFIDMAKKESID 60

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +    + + +         ++VAGC++Q    E+    P V+  +GP       + +  
Sbjct: 61  AIFGAVDGRKTDPDRERQ-KIIVAGCLSQRFATELPGIMPEVDAFIGPSATEDPRDFV-- 117

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
                  +   Y  +    R+ +    +       A++ I EGC+  CTFC++P  RG  
Sbjct: 118 ------TLKPQYVPDFSTPRIRLTPDHF-------AYVKIAEGCNHTCTFCIIPKIRGQH 164

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR+   V  E   L+ +GV EI L+ Q+   +     +G   +   LL  ++ I+G   
Sbjct: 165 RSRTQESVFKEVEALVKSGVKEINLISQDTTYFGMDQWEGN--SLCTLLRQINTIEGDFW 222

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R   +HP   SD LI+   + D +  Y+ +P+Q  SD +L +M R  +    R ++ R+
Sbjct: 223 VRLLYTHPAHWSDELIETIAECDKVAKYVDIPLQHISDHMLSAMKRVTSGDYIRDLLRRM 282

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+  P + I + FIVGFPGET++DF   ++ + +  + +A  F+YS   GT    M  Q+
Sbjct: 283 RAGIPGLGIRTTFIVGFPGETEEDFNELLEFIREFRFERAGVFQYSKEEGTRAYKMDGQL 342

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
               +  R      +L++     N A VG+ + VL+E+ G  + +    +P +   V+  
Sbjct: 343 HHATRKSRWSRAMAELQKIAGETNQAQVGKAVRVLVEEPGVARTQW--DAPEIDGSVIVD 400

Query: 443 KNHNIGDIIKVRITDVKISTLYG 465
           +   +G+   + I D +   L  
Sbjct: 401 EALPVGEFADITIGDWRGYDLVA 423


>gi|294776168|ref|ZP_06741657.1| MiaB-like protein [Bacteroides vulgatus PC510]
 gi|294449991|gb|EFG18502.1| MiaB-like protein [Bacteroides vulgatus PC510]
          Length = 432

 Score =  365 bits (936), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 110/453 (24%), Positives = 203/453 (44%), Gaps = 35/453 (7%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDA--DLIVLNTCHIREKAAEKVYSF 83
              + + GC  N+ DS ++     + GY+  +  D    ++ V+NTC     A E+  + 
Sbjct: 5   TIDIITLGCSKNLVDSEKLMRQLEANGYKVTHDSDKPQGEIAVINTCGFIGDAKEESINM 64

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +      K      G    + V GC+++   +E+    P V+   G   +  L   L +A
Sbjct: 65  ILEFCQAKEE----GKLKKLYVMGCLSERYLKELALEIPQVDKFYGKFNWNELLADLGKA 120

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
                     Y  E   ER       Y       A+L I EGCD+ C++C +P   G  I
Sbjct: 121 ----------YKSEFAIERTLTTPHHY-------AYLKISEGCDRKCSYCAIPIITGRHI 163

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR + +++DE + L+  GV E  ++ Q +  + G  L  +     +L+  ++ + G+  +
Sbjct: 164 SRPMEEIIDEVKLLVSEGVKEFQIIAQELT-YYGVDLY-KSQKLPELIERIANVPGVEWI 221

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R   ++P    + L +   + D +  Y+ + +Q  SD +L  M R  +  E  ++I++ R
Sbjct: 222 RLHYAYPAHFPEELFRVMREHDNVCKYMDIALQHISDNMLNKMRRHVSKAETYELIEKFR 281

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN-MLEQV 382
              P I + +  +VG PGET++DF    + V K+ + +  +F YS   GT  +    + +
Sbjct: 282 REIPGIHLRTTLMVGHPGETEEDFEELKEFVKKVRFDRMGAFAYSEEEGTFAAKEYEDSI 341

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQS- 437
              VK +RL  L    +E     +   +G+  +V+I++  KE    +GR+    P +   
Sbjct: 342 SHEVKQQRLDELMALQQEIAGELSQTKIGKEFKVIIDR--KEGDYYIGRTQFDSPEVDPE 399

Query: 438 VVLNSKNH--NIGDIIKVRITDVKISTLYGELV 468
           V++ +      IG+  KV+IT      LY  ++
Sbjct: 400 VLIKADEEYLKIGEFYKVKITAADDFDLYASIL 432


>gi|258511959|ref|YP_003185393.1| MiaB-like tRNA modifying enzyme [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
 gi|257478685|gb|ACV59004.1| MiaB-like tRNA modifying enzyme [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
          Length = 471

 Score =  365 bits (936), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 141/459 (30%), Positives = 220/459 (47%), Gaps = 36/459 (7%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           +P      + GC++N YD+  +   F  +GY +V     AD+ V+NTC +      K   
Sbjct: 1   MP-TVAFHTLGCKVNFYDTEGIWQTFKRRGYTQVPFDSVADVYVVNTCTVTHTGDRKSRQ 59

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            + R        ++   D +VVV GC AQ   +EI  R   V++VVG     ++ + +E 
Sbjct: 60  MIRRA-------VRTNPDAVVVVTGCYAQIAPDEIA-RIQGVDLVVGNDQKSKIVDHVEA 111

Query: 143 ARFGKRVVDTDYSVEDKFERLSI-VDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
               ++      ++    E   + V     R R   A L IQ+GC+ FCTFC++P  RG+
Sbjct: 112 VLAERKPYLAVGNIMQATEFDELDVPYFEERSR---ANLKIQDGCNNFCTFCIIPRARGL 168

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
             SR    VV +A KL   G  EI L G +     G G D E    +DLL  L  I    
Sbjct: 169 IRSRKPENVVLQATKLARAGYREIVLTGIHTG---GYGEDFENYRLADLLLDLERIDLPF 225

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R ++    ++ D L+        ++P+LH+P+Q+GSD +L+ M+R +T  EY + +  
Sbjct: 226 RIRISSIEASEIDDRLMDVLAASKKVVPHLHIPLQAGSDPVLRRMHRHYTTAEYAEKLRE 285

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R   PD+A+++D IVGFPGETD+ F  T   V   GYAQ   F YSPR GT      +Q
Sbjct: 286 LRRRLPDLAVTTDVIVGFPGETDEQFGETYAFVRAQGYAQLHVFPYSPRRGTAAYKFKDQ 345

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKH---GKEKGK----------- 427
           V E+VK  R+  +     + + ++  + VG+ +EV+ E       ++ +           
Sbjct: 346 VPEDVKRARVARMIALGDDLRQAYAASFVGRELEVIAESPLASADDEARRAYSHLPEASR 405

Query: 428 -LVGRSPWLQSVVLNSK-----NHNIGDIIKVRITDVKI 460
            LVG       V   +         IG++I+VR+T V  
Sbjct: 406 MLVGYDGHYLRVAFEAPSDVPLESMIGEVIRVRMTGVGP 444


>gi|320530820|ref|ZP_08031858.1| MiaB-like tRNA modifying enzyme [Selenomonas artemidis F0399]
 gi|320136906|gb|EFW28850.1| MiaB-like tRNA modifying enzyme [Selenomonas artemidis F0399]
          Length = 438

 Score =  365 bits (936), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 132/444 (29%), Positives = 220/444 (49%), Gaps = 20/444 (4%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
               + GC++N +++  ME +F ++GY+ V   + AD+ V+NTC +   +  K    + R
Sbjct: 11  VAFMTLGCKVNQFETETMEGLFRARGYDVVPFEESADVYVVNTCSVTHLSDRKSRQIIRR 70

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
                    +      + V GC AQ   EEI      V VV+G +   ++ + +E A   
Sbjct: 71  AA-------RTNPRACIAVCGCYAQVAPEEIRA-LDGVRVVIGTKERAQIVDYVEEAMRA 122

Query: 147 KRVVD---TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           +  +    TD      FE + +       +    AFL I++GC  FCTFC++PY RG   
Sbjct: 123 ESGISGQITDIMQARTFEDIPLAHMPQRTR----AFLKIEDGCQNFCTFCIIPYARGPVK 178

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR L+ V  E  ++   G  EI L G ++ A  G  L G + T +D   +   +  L RL
Sbjct: 179 SRELAAVRRETERIAAAGFHEIVLTGIHLGA-YGIDLPG-RPTLADACRTALSLPELRRL 236

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R  +    ++S+ L++          +LHLP+Q+GSD +L +MNR +    + ++I+ +R
Sbjct: 237 RLGSLESVELSNDLLELIRTEPRFAAHLHLPLQAGSDGVLTAMNRHYDTAAFARLIEDVR 296

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              P +A+S+D IVGFPGET+  F  ++D V ++G+A+   F YS R GTP +   +QV 
Sbjct: 297 RAVPGVAVSTDIIVGFPGETEAQFEESLDFVRRMGFARMHVFPYSARRGTPAARRPDQVP 356

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
             ++ ER   +Q    E  V ++ A +G + +VL E      G   G +     V  ++ 
Sbjct: 357 APIRKERAARMQALAEELAVGYHRAALGTVTDVLFETTAH--GVTDGLTDTYIRVYTDAP 414

Query: 444 NHNIGDIIKVRITDVKISTLYGEL 467
               GD++ VR+T +    ++GE 
Sbjct: 415 VTR-GDLVSVRLTRLFRDGVWGEP 437


>gi|218781077|ref|YP_002432395.1| MiaB-like tRNA modifying enzyme YliG [Desulfatibacillum
           alkenivorans AK-01]
 gi|218762461|gb|ACL04927.1| MiaB-like tRNA modifying enzyme YliG [Desulfatibacillum
           alkenivorans AK-01]
          Length = 451

 Score =  365 bits (936), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 122/460 (26%), Positives = 205/460 (44%), Gaps = 19/460 (4%)

Query: 13  MVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHI 72
           M S   +Q I      + S GC  N+ DS  +     S G+       +A+ I++N+C  
Sbjct: 1   MNSNTDNQEI----VHLVSLGCVRNLVDSELILGALASGGFALTEDPAEAETIIINSCGF 56

Query: 73  REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT 132
              A ++    +  + + K      G    +V+ GC+AQ  G+E+    P +++VVGP  
Sbjct: 57  VRAAVDETIDVVLEMAHYKEE----GRCQRLVLCGCMAQRYGKELEEALPELDMVVGPGA 112

Query: 133 YYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTF 192
           +  + ELL R       V    +   +      +           A++ I EGC   CTF
Sbjct: 113 HKDIVELLRRPTGFICQVPDPSTAPLQQASFPRICST-----PHMAYIKISEGCPDRCTF 167

Query: 193 CVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLY 252
           C++P  RG   SR L  +V+EA  LI  G  EI L+ Q+  A+        + +   LL 
Sbjct: 168 CMIPQLRGAWRSRPLDDIVEEAGNLIQWGAKEIILVAQDTTAYGLDFDKQNRTSLDQLLS 227

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
           SL  ++G  R R+   HP  ++D L++       +  Y  LPVQ GSDRILK M R++T 
Sbjct: 228 SLCRLEGETRFRFLYGHPNRVTDALLETAASQPRVCSYFDLPVQHGSDRILKMMGRKNTR 287

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
            E  ++ ++IR+  PD+A+ +  +VGFPGET++DF   ++ V +  +     F YS    
Sbjct: 288 DEMLRLFEKIRATVPDVALRTTALVGFPGETEEDFNQLVEFVQEARFDHLGVFAYSDAEE 347

Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGR 431
            P   + + V E+   +R   +  +     +  N   VG+    L+     +      G+
Sbjct: 348 IPSHRLPDHVPEDTAIKRRDYIMDRQNTISLDNNADRVGKTYTALVLGESGDPEYPYWGK 407

Query: 432 S----PWLQSVVLN-SKNHNIGDIIKVRITDVKISTLYGE 466
           +    P +  V     ++   G + +V +    +  L  E
Sbjct: 408 TCLQAPDVDGVTFIQGEDLGPGRLARVTVHGADVYDLLAE 447


>gi|148546471|ref|YP_001266573.1| ribosomal protein S12 methylthiotransferase [Pseudomonas putida F1]
 gi|238066508|sp|A5VZS9|RIMO_PSEP1 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|238066635|sp|Q88NL0|RIMO_PSEPK RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|148510529|gb|ABQ77389.1| MiaB-like tRNA modifying enzyme YliG [Pseudomonas putida F1]
 gi|313497550|gb|ADR58916.1| RimO [Pseudomonas putida BIRD-1]
          Length = 443

 Score =  365 bits (936), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 128/464 (27%), Positives = 214/464 (46%), Gaps = 34/464 (7%)

Query: 18  VDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA 77
           +       +    S GC   + DS R+      +GYE V + +DAD++V+NTC   + A 
Sbjct: 1   MSTTPATPKVGFVSLGCPKALVDSERILTQLRMEGYEVVPTYEDADVVVVNTCGFIDSAK 60

Query: 78  EKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLP 137
            +    +G         IKE G   V+V GC+   EG  I    P V  V GPQ Y ++ 
Sbjct: 61  AESLEVIGEA-------IKENG--KVIVTGCMGVEEGS-IRDVHPSVLSVTGPQQYEQVV 110

Query: 138 ELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197
             +      ++  +    +        +   G        A+L I EGC+  C+FC++P 
Sbjct: 111 NAVHEVVPPRQDHNPLIDL--------VPPQGVKLTPRHYAYLKISEGCNHSCSFCIIPS 162

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSD 249
            RG  +SR + +V+ EA +L+  GV EI ++ Q+ +A+      +    +G   K    +
Sbjct: 163 MRGKLVSRPVGEVLSEAERLVKAGVKEILVISQDTSAYGVDVKYKTDFWNGRPVKTRMLE 222

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
           L  +LS +   VRL Y   +P       + A G    ++PYL +P Q  S ++LKSM R 
Sbjct: 223 LCEALSSLGAWVRLHYVYPYPNVDDVIPLMAAG---KILPYLDIPFQHASPKVLKSMKRP 279

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369
                    I   R   P++ I S FIVGFPGET++DF+  +D + +    +   F+YSP
Sbjct: 280 AFEDRTLARIKNWREQCPELVIRSTFIVGFPGETEEDFQYLLDWLTEAQLDRVGCFQYSP 339

Query: 370 RLGTPGSNM-LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--G 426
             G P +++ L +V ++VK ER        +    +     +G+ I+VLI++  ++   G
Sbjct: 340 VEGAPANDLGLAEVPDDVKQERWDRFMAHQQAISAARLQLRIGKEIDVLIDEVEEQGSVG 399

Query: 427 KLVGRSPWLQSVVLNSKNH--NIGDIIKVRITDVKISTLYGELV 468
           +    +P +   V    +H    GD ++ R+ D     ++ E +
Sbjct: 400 RSFFDAPEIDGSVFIDGDHGFKPGDKVRCRVVDADEYDMWAEPI 443


>gi|144898728|emb|CAM75592.1| conserved hypothetical protein [Magnetospirillum gryphiswaldense
           MSR-1]
          Length = 470

 Score =  364 bits (935), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 124/466 (26%), Positives = 213/466 (45%), Gaps = 35/466 (7%)

Query: 16  QIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREK 75
            +  + I   +  + S GC   + DS R+     ++GY+  +S D AD++V+NTC   + 
Sbjct: 19  PLPLRSITIPKIGIVSLGCAKALVDSERILTRLRAEGYDISDSYDGADVVVVNTCGFLDS 78

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135
           A  +    +G              +  V+V GC+   E + I +  P V  V GP  Y +
Sbjct: 79  ARAESLEAIGEA---------MNENGRVIVTGCMGGEE-DVIRKAHPDVLAVTGPHQYQQ 128

Query: 136 LPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
           + + + +A             E       +   G +      A+L I EGC+  C+FC++
Sbjct: 129 VVDAVHQAA----------PPESSPLHSLVPPEGLHLTPSHYAYLKISEGCNHRCSFCII 178

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE--------KCTF 247
           P  RG   SR +  V++EA +L   G+ EI ++ Q+  A+       E        K   
Sbjct: 179 PGIRGDLASRPVGDVLEEAERLAMAGIKEILVISQDTGAYGLDIKYAESPWHGRAVKARL 238

Query: 248 SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307
           +++  +L ++    RL Y   +P       + A G    ++PYL +P Q  S ++LK+M 
Sbjct: 239 TEMAEALGDLGVWTRLHYVYPYPHVDEVIPLMAAG---KILPYLDIPFQHASPKVLKAMR 295

Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           R        + I   R + PD+AI S FIVGFPGET++DF   +D + K    +   FKY
Sbjct: 296 RPADHERLLERITGWREICPDLAIRSTFIVGFPGETEEDFEFLLDWLQKARIDRVGCFKY 355

Query: 368 SPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-- 425
               G   +++ + VDE+VK ER   L +  R+     +   +G+ IEV+I++  ++   
Sbjct: 356 ENVAGAAANHLADHVDEDVKEERYNRLMEVARQISDEISKGKIGKTIEVIIDEVDEDGAY 415

Query: 426 GKLVGRSPWLQSVVLNS--KNHNIGDIIKVRITDVKISTLYGELVV 469
           G+    SP +   V  +   +   GD++ V +   +   L+G +V 
Sbjct: 416 GRSWADSPEVDGCVYINHETDAQPGDVVMVEVEHAEDFDLWGRIVA 461


>gi|220932113|ref|YP_002509021.1| MiaB-like tRNA modifying enzyme [Halothermothrix orenii H 168]
 gi|219993423|gb|ACL70026.1| MiaB-like tRNA modifying enzyme [Halothermothrix orenii H 168]
          Length = 438

 Score =  364 bits (935), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 135/451 (29%), Positives = 243/451 (53%), Gaps = 19/451 (4%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           +       + GC++N Y++  M  +F   GY+ V+  D AD+ ++N+C +  +AA K   
Sbjct: 1   MMNTVAFHTLGCKVNHYETEAMMGIFEEAGYKVVDFDDRADVYIINSCTVTNEAARKSRQ 60

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
              + R       ++  + +V + GC AQ   +E+ ++   +++V+G      + +L+E 
Sbjct: 61  LARKAR-------RKNPEAVVALVGCYAQVSPDEV-KKIDAIDLVLGSDRRKDIVKLVEE 112

Query: 143 ARFG-KRVVDT-DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
            R G K V D  D+     +E L+I       K    A++ I+EGC++FC++C++PY RG
Sbjct: 113 VRTGGKEVTDVKDFKKLTTYEDLNI----NKVKETTRAYIKIEEGCNQFCSYCIIPYARG 168

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
              SR    V+ E  +L+  GV EI L G ++ A  G   + +K    +L+ +L ++KGL
Sbjct: 169 PVRSRKEESVIQEVERLVRAGVKEIVLTGTHLGA-YGLDENNDKA-LVELIQNLVKVKGL 226

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R ++    +++D LI+  G  D + P+LHLP+QSGS+ ILK M R +T  E+++ +D
Sbjct: 227 ARIRLSSLEVTEVNDDLIRIMGSEDKVCPHLHLPLQSGSNTILKKMKRPYTVEEFKETVD 286

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           +IR +  DIAI++D IVGFPGE   +F  + + V ++G+++   F +S R GTP + M  
Sbjct: 287 KIRKIIEDIAITTDIIVGFPGEGQKEFNESYNTVKELGFSRLHVFPFSIRQGTPAARMKN 346

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKH-GKEKGKLVGRSPWLQSVV 439
           QV  +VK E    +++  ++  + +     G + +V+IE +       L G +     V+
Sbjct: 347 QVPGDVKKEYSKKMRELNKKLMLEYQKRFWGHLRDVIIEDNRDSRTNLLTGVTGNYIKVM 406

Query: 440 L-NSKNHNIGDIIKVRITDVKIS-TLYGELV 468
           + N+ +   G + KVR+          G+++
Sbjct: 407 IENADDSLRGKMCKVRLDKAYNHEYAIGKVI 437


>gi|254882029|ref|ZP_05254739.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|319640963|ref|ZP_07995671.1| Fe-S oxidoreductase [Bacteroides sp. 3_1_40A]
 gi|254834822|gb|EET15131.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|317387408|gb|EFV68279.1| Fe-S oxidoreductase [Bacteroides sp. 3_1_40A]
          Length = 432

 Score =  364 bits (935), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 110/453 (24%), Positives = 204/453 (45%), Gaps = 35/453 (7%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDA--DLIVLNTCHIREKAAEKVYSF 83
              + + GC  N+ DS ++     + GY+  +  D    ++ V+NTC     A E+  + 
Sbjct: 5   TIDIITLGCSKNLVDSEKLMRQLEANGYKVTHDSDKPQGEIAVINTCGFIGDAKEESINM 64

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +      K      G    + V GC+++   +E+    P V+   G   +  L   L +A
Sbjct: 65  ILEFCQAKEE----GKLKKLYVMGCLSERYLKELALEIPQVDKFYGKFNWNELLADLGKA 120

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
                     Y  E   ER       Y       A+L I EGCD+ C++C +P   G  I
Sbjct: 121 ----------YKSEFAIERTLTTPHHY-------AYLKISEGCDRKCSYCAIPIITGRHI 163

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR + +++DE + L+  GV E  ++ Q +  + G  L  +     +L+  ++ + G+  +
Sbjct: 164 SRPMEEIIDEVKLLVSEGVKEFQIIAQELT-YYGVDLY-KSQKLPELIERIANVPGVEWI 221

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R   ++P    + L +   + D +  Y+ + +Q  SD +L  M R  +  E  ++I++ R
Sbjct: 222 RLHYAYPAHFPEELFRVMREHDNVCKYMDIALQHISDNMLNKMRRHVSKAETYELIEKFR 281

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN-MLEQV 382
              P I + +  +VG PGET++DF    + V K+ + +  +F YS   GT  +    + +
Sbjct: 282 REVPGIHLRTTLMVGHPGETEEDFEELKEFVKKVRFDRMGAFAYSEEEGTFAAKEYEDSI 341

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQS- 437
              VK +RL  L    +E     +   +G+  +V+I++  KE    +GR+    P +   
Sbjct: 342 SHEVKQQRLDELMALQQEIAGELSQTKIGKEFKVIIDR--KEGDYYIGRTQFDSPEVDPE 399

Query: 438 VVLNSKNH--NIGDIIKVRITDVKISTLYGELV 468
           V++ + +    IG+  KV+IT      LY  ++
Sbjct: 400 VLIKADDEYLKIGEFYKVKITAADDFDLYASIL 432


>gi|226954088|ref|ZP_03824552.1| MiaB-like tRNA modifying enzyme YliG [Acinetobacter sp. ATCC 27244]
 gi|294650305|ref|ZP_06727673.1| 2-methylthioadenine synthetase [Acinetobacter haemolyticus ATCC
           19194]
 gi|226835129|gb|EEH67512.1| MiaB-like tRNA modifying enzyme YliG [Acinetobacter sp. ATCC 27244]
 gi|292823835|gb|EFF82670.1| 2-methylthioadenine synthetase [Acinetobacter haemolyticus ATCC
           19194]
          Length = 447

 Score =  364 bits (935), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 124/460 (26%), Positives = 208/460 (45%), Gaps = 37/460 (8%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC   + DS R+     ++GY+  +  D ADL+V+NTC   E A ++    +G
Sbjct: 5   KVGFVSLGCPKALVDSERILTQLKTEGYQVASDYDGADLVVINTCGFIESAVQESLDAIG 64

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                         +  V+V GC+   + ++I +  P V  V G   Y  + E +     
Sbjct: 65  EA---------MSENGRVIVTGCLG-KDEDKIRQMHPNVLKVTGAAAYQDVMEAVHEY-- 112

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                      +       + + G        A+L I EGC+  CTFC++P  RG  +SR
Sbjct: 113 ------VPAPPKHNPFIDLVPEQGVRLTPKHYAYLKISEGCNHRCTFCIIPSMRGDLVSR 166

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYSLSEI 257
            + QV+DEA  L   GV E+ ++ Q+ +A+      +    +G+  K  F D+  +L ++
Sbjct: 167 PVGQVLDEAAALKRAGVKEVLVISQDTSAYGVDTKYKLDFWNGQPVKTKFYDMCEALGQL 226

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
              VRL Y   +P   +   + A G    ++PYL +P Q  S RILK M R   +    +
Sbjct: 227 GIWVRLHYVYPYPHVDAAIDLMAQG---KILPYLDIPFQHASPRILKLMKRPAHSENTLE 283

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
            +   R   P++ I S F+VGFPGET++DF+  +D + +    +   F YSP  G   ++
Sbjct: 284 RLKLWREKCPELVIRSTFVVGFPGETEEDFQMLLDWLKEAQLDRVGCFTYSPVEGATAND 343

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----P 433
           + + V E VK ER     +  ++   +     +GQ + VL++   +E    V RS    P
Sbjct: 344 LPDHVPEEVKQERYERFMEVQQQISAAKLQKRIGQRMIVLVDSLEEEFPVAVARSYADAP 403

Query: 434 WLQSVVLNSKNHN----IGDIIKVRITDVKISTLYGELVV 469
            +   V            G++++V ITD     L+ +L+ 
Sbjct: 404 EIDGNVFVEDIDKSVIQAGNLLEVEITDADEYDLFAKLIA 443


>gi|91977104|ref|YP_569763.1| hypothetical protein RPD_2633 [Rhodopseudomonas palustris BisB5]
 gi|123721828|sp|Q136X7|RIMO_RHOPS RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|91683560|gb|ABE39862.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB5]
          Length = 441

 Score =  364 bits (935), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 136/463 (29%), Positives = 210/463 (45%), Gaps = 38/463 (8%)

Query: 18  VDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA 77
           + Q   P+  FV S GC   + DS R+     ++GYE     D ADL+++NTC   + A 
Sbjct: 1   MQQAAAPKISFV-SLGCPKALVDSERIITRLRAEGYELARQHDGADLVIVNTCGFLDSAK 59

Query: 78  EKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLP 137
           ++  + +G                 V+V GC+  AE E+I    P V  + GPQ Y  + 
Sbjct: 60  QESLAAIGEAMAANGK---------VIVTGCMG-AEPEQIEAAYPGVLSITGPQQYESVL 109

Query: 138 ELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197
           E + RA+        D           + + G        A+L I EGC+  C+FC++P 
Sbjct: 110 EAVHRAKPALHNPHLDL----------VPEQGIRLTPRHYAYLKISEGCNNRCSFCIIPK 159

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE---------KCTFS 248
            RG  +SRS   V+ EA KL+  GV E+ ++ Q+ +A  G  L            +  F 
Sbjct: 160 LRGDLVSRSADDVLREAEKLVAAGVKELLVISQDTSA-YGVDLKYAESPWKDRTVRAKFI 218

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
           DL   L E+   VRL Y   +P       + A G    ++PYL +P Q  S  +LK M R
Sbjct: 219 DLARELGELGAWVRLHYVYPYPHVDEVIGLMAEG---KVLPYLDIPFQHASPDVLKLMKR 275

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
                +    I R R+  PD+A+ S FIVGFPGET+ DF   +D +D+    +  +FKY 
Sbjct: 276 PAAQDKTLDRIKRWRADCPDLALRSTFIVGFPGETERDFEFLLDWLDEAEIDRLGAFKYE 335

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK--EKG 426
           P  G P + + +Q+   VK ER   L  + +          VG   +++I++ G    KG
Sbjct: 336 PVAGAPSNALPDQISAEVKQERWNRLMARQQVISARRLKRKVGTRQQIIIDEVGPTVAKG 395

Query: 427 KLVGRSPWLQSVVLNSK--NHNIGDIIKVRITDVKISTLYGEL 467
           +    +P +   V  S      +G+I+  +I       L+G +
Sbjct: 396 RSKADAPEIDGSVYLSSRRPLRVGEIVTAKIDRADAYDLHGTV 438


>gi|288962243|ref|YP_003452538.1| hypothetical protein AZL_d01680 [Azospirillum sp. B510]
 gi|288914509|dbj|BAI75994.1| hypothetical protein AZL_d01680 [Azospirillum sp. B510]
          Length = 439

 Score =  364 bits (935), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 125/455 (27%), Positives = 200/455 (43%), Gaps = 37/455 (8%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +  + S GC   + DS R+     ++GYE   S D AD++++NTC   + A ++    +G
Sbjct: 5   KVGIVSLGCPKALVDSERILTRLRAEGYEISPSYDGADVVLVNTCGFLDSAKKESLDAIG 64

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                    IKE G   V+V GC+   E + I +  P V  V GP  Y ++   +     
Sbjct: 65  EA-------IKENG--RVIVTGCMG-VESDLIRQIHPDVLAVTGPHQYEQVVSAVH---- 110

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                D      + F  L +   G        A+L I EGC+  C+FC++P  RG  +SR
Sbjct: 111 -----DAVPPTHNPFTDL-VPPEGLRLTPRHYAYLKISEGCNNRCSFCIIPSLRGDLVSR 164

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE---------KCTFSDLLYSLSE 256
            +  V+ EA KL   GV E+ ++ Q+ +A  G  +  +         +  F DL   L+ 
Sbjct: 165 PIHSVLREAEKLAVAGVKELLVISQDTSA-YGVDVKYKTEKWYDREVRTRFFDLCNELAN 223

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
               VRL Y   +P       + A G    ++PYL +P Q  S  +LK+M R     +  
Sbjct: 224 FDLWVRLHYVYPYPHVDEVIPLMAEG---KILPYLDIPFQHASPTVLKAMRRPAAQEKQL 280

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
             I + R   P + + S FI GFPGET++DF+  +D + +    +   FKY P  G   +
Sbjct: 281 DRIRKWRDECPHLVLRSTFITGFPGETEEDFQFMLDWLKEAQLDRVGCFKYEPVEGATAN 340

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPW 434
           ++   V E VK ER     +  +          VG  + VLI++  +E   G+    +P 
Sbjct: 341 DLPGAVPEEVKQERWERFMETQKAISAERLQQKVGYTLGVLIDEVDEEGAIGRSYADAPE 400

Query: 435 LQSVVLNSKN--HNIGDIIKVRITDVKISTLYGEL 467
           +   V  +       GD++ V I       L+G +
Sbjct: 401 IDGNVFLNGETGLKPGDMVDVTIEHADEYDLWGSV 435


>gi|282858818|ref|ZP_06267963.1| MiaB-like protein [Prevotella bivia JCVIHMP010]
 gi|282588387|gb|EFB93547.1| MiaB-like protein [Prevotella bivia JCVIHMP010]
          Length = 450

 Score =  364 bits (935), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 121/449 (26%), Positives = 204/449 (45%), Gaps = 35/449 (7%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEKVYSFLGR 86
           + + GC  N+ DS  +   F + G+E  +  +  + ++ V+NTC   E A E+  + +  
Sbjct: 26  IITMGCSKNLVDSELLMKQFEANGFECTHDTEQPEGEIAVINTCGFIETAKEESINTILE 85

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
             N K      G    + V GC++Q   +E+ +  P V+   G   Y +L   L +A   
Sbjct: 86  FVNRKEK----GQLNKLFVMGCLSQRYKDELEKEIPEVDKFYGKFNYKQLLTDLGKA--- 138

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
                         +  S     +       A++ I EGCD+ C +C +P   G   SR 
Sbjct: 139 --------------DVTSCNGVRHLTTPRHYAYIKIAEGCDRHCAYCAIPLITGKHRSRK 184

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
           +  ++ E  +L+  GV E  ++ Q +  + G  LDG K   ++L+  +++IKG+  +R  
Sbjct: 185 MEDILQEVEQLVAQGVKEFQVIEQELT-YYGVDLDG-KHHITELISRMADIKGVEWIRLH 242

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
            ++P      L+        +  YL +  Q  SD +L  M+R  +  E   +I  IRS  
Sbjct: 243 YAYPNQFPFDLLDVIAQKPNVCKYLDIAFQHISDHMLDRMHRHVSKQETINLIKEIRSRV 302

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP-GSNMLEQVDEN 385
           P I + +  +VGFPGETD+DF    D V ++ + +  +F YS   GT    +  + V E 
Sbjct: 303 PSIHLRTTLLVGFPGETDEDFEELKDFVREVRFERMGAFAYSREEGTYSAEHYEDDVPEE 362

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVLN 441
           VK +RL  L    +E      +  +GQ  +V+I++  +E    +GR+    P +   VL 
Sbjct: 363 VKQQRLDELMAIQQEISTELEETKIGQTFKVIIDR--EEGDYYIGRTEFCSPDVDPEVLI 420

Query: 442 S---KNHNIGDIIKVRITDVKISTLYGEL 467
           S       +G+   V ITD     LYGE+
Sbjct: 421 SIGEVPLRVGEFYNVYITDSDEFDLYGEV 449


>gi|150005789|ref|YP_001300533.1| putative Fe-S oxidoreductase [Bacteroides vulgatus ATCC 8482]
 gi|238065291|sp|A6L5E7|RIMO_BACV8 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|149934213|gb|ABR40911.1| putative Fe-S oxidoreductase [Bacteroides vulgatus ATCC 8482]
          Length = 432

 Score =  364 bits (935), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 110/453 (24%), Positives = 203/453 (44%), Gaps = 35/453 (7%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDA--DLIVLNTCHIREKAAEKVYSF 83
              + + GC  N+ DS ++     + GY+  +  D    ++ V+NTC     A E+  + 
Sbjct: 5   TIDIITLGCSKNLVDSEKLMRQLEANGYKVTHDSDKPQGEIAVINTCGFIGDAKEESINM 64

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +      K      G    + V GC+++   +E+    P V+   G   +  L   L +A
Sbjct: 65  ILEFCQAKEE----GKLKKLYVMGCLSERYLKELALEIPQVDKFYGKFNWNELLADLGKA 120

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
                     Y  E   ER       Y       A+L I EGCD+ C++C +P   G  I
Sbjct: 121 ----------YKSEFAIERTLTTPHHY-------AYLKISEGCDRKCSYCAIPIITGRHI 163

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR + +++DE + L+  GV E  ++ Q +  + G  L  +     +L+  ++ + G+  +
Sbjct: 164 SRPMEEIIDEVKLLVSEGVKEFQIIAQELT-YYGVDLY-KSQKLPELIERIANVPGVEWI 221

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R   ++P    + L +   + D +  Y+ + +Q  SD +L  M R  +  E  ++I++ R
Sbjct: 222 RLHYAYPAHFPEELFRVMREHDNVCKYMDIALQHISDNMLNKMRRHVSKAETYELIEKFR 281

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN-MLEQV 382
              P I + +  +VG PGET++DF    + V K+ + +  +F YS   GT  +    + +
Sbjct: 282 REVPGIHLRTTLMVGHPGETEEDFEELKEFVKKVRFDRMGAFAYSEEEGTFAAKEYEDSI 341

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQS- 437
              VK +RL  L    +E     +   +G+  +V+I++  KE    +GR+    P +   
Sbjct: 342 SHEVKQQRLDELMALQQEIAGELSQTKIGKEFKVIIDR--KEGDYYIGRTQFDSPEVDPE 399

Query: 438 VVLNSKNH--NIGDIIKVRITDVKISTLYGELV 468
           V++ +      IG+  KV+IT      LY  ++
Sbjct: 400 VLIKADEEYLKIGEFYKVKITAADDFDLYASIL 432


>gi|312144012|ref|YP_003995458.1| RNA modification enzyme, MiaB family [Halanaerobium sp.
           'sapolanicus']
 gi|311904663|gb|ADQ15104.1| RNA modification enzyme, MiaB family [Halanaerobium sp.
           'sapolanicus']
          Length = 440

 Score =  364 bits (935), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 125/442 (28%), Positives = 234/442 (52%), Gaps = 15/442 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + ++    + GC++N Y++  + D+F    +E V+   +AD+ ++N+C +  +AA K   
Sbjct: 4   MNKKAAFYTLGCKVNQYETEAIIDIFLDNNFEIVDFSAEADVYIINSCTVTNQAASKSRK 63

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
              R +       +   D LV V GC  QA  EE+      ++ ++G     ++   +++
Sbjct: 64  IARRAK-------RSNNDSLVAVVGCYTQAFPEEV-SSISEIDFIMGSSNKSKIVNKVKK 115

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNR-KRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
              GK   + D  +++  E     D    R      A + I++GC++FC++C++PY RG 
Sbjct: 116 LLAGK---NVDNEIKEYQELKDYEDLEIKRLSNTTRANIKIEDGCNQFCSYCIIPYARGP 172

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
             SR    +++E +K+I  GV EI L G ++ A  G    G K   +DL+  L+E+  L 
Sbjct: 173 VRSREQKSILNEIKKMIGQGVKEIILTGTHLGA-YGTD-KGNKTALTDLMQQLTELNNLQ 230

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           RLR ++    ++   +I    + D+  P+LHLP+QSGS+ ILK+M R +TA E+++ I++
Sbjct: 231 RLRLSSIEGTEIDAKMIDLIAENDIFCPHLHLPLQSGSNEILKAMQRPYTAEEFKETINK 290

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           IR+  PDIAI++D IVGFPGE +  F+ T++LV ++ +++   F +S R GTP   M  +
Sbjct: 291 IRAKIPDIAITTDIIVGFPGENEKTFKQTLELVKELKFSKIHVFPFSAREGTPAFKMDNK 350

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSVVL 440
           ++ N+  +    L+   +     +    +GQ  +VLIE+   ++ G L G +     +++
Sbjct: 351 LNGNIIKKFSKKLRFINKSLMEEYQANFLGQNKKVLIEEARDQQTGFLTGYTDNYLKILV 410

Query: 441 NSKNHNIGDIIKVRITDVKIST 462
              ++    + +V++      +
Sbjct: 411 EGPDNLKNTLREVKLEQSFDHS 432


>gi|330444543|ref|YP_004377529.1| MiaB-like tRNA modifying protein YliG [Chlamydophila pecorum E58]
 gi|328807653|gb|AEB41826.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Chlamydophila
           pecorum E58]
          Length = 461

 Score =  364 bits (934), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 119/452 (26%), Positives = 211/452 (46%), Gaps = 23/452 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC  N+ DS  M  +    GYE  + + +AD ++LNTC   + A ++  ++L 
Sbjct: 19  KIHFISLGCSRNLVDSEVMLGILLKAGYEATDQLANADYLILNTCAFLKAARDEGKAYLQ 78

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R+   K    K      +++ GC+      E+    P ++ ++G      + E +E    
Sbjct: 79  RLIQEKKKGAK------IILTGCMVSKHKSELEPWLPYIHYLLGSGDVEHILEAIESKEK 132

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G+ +    Y    +  R       Y       A+L + EGC K C FC++P  +G   S+
Sbjct: 133 GESISAKSYLEIGEVPRKLSTPKHY-------AYLKVSEGCKKQCAFCIIPAIKGKLRSK 185

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT-FSDLLYSLSEIKGLVRLR 264
            + QV+ E R L+ +G+ EI L+ Q++    GK    ++ +    LL  + +  G   LR
Sbjct: 186 PVEQVLKEVRLLLSSGIKEIILIAQDLG-DYGKDFSSDRSSQLEYLLKEILKEPGDYWLR 244

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
               +P +++D +I        L+PY+ +P+Q  +DRILKSM R  +  +   ++ ++R 
Sbjct: 245 LLYLYPDEVNDAIIDLMEHDPRLLPYVDIPLQHINDRILKSMRRTTSKAQILALLQKLRE 304

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             P + I S  IVGFPGET ++F+   D + +        F YS   GTP + +  Q+ E
Sbjct: 305 RIPHVYIRSSVIVGFPGETQEEFQELADFIQEGWVDNLGIFTYSQEPGTPAAALPNQISE 364

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-----KLVGRSPWLQSVV 439
            +K+ RL  L +  +      N   +GQ +EV+++ +  E       +  G+SP +   V
Sbjct: 365 KIKSSRLKILSQIQKSNVEHHNRNLLGQKVEVIVDGYHPESDLLLTARFYGQSPEVDPCV 424

Query: 440 LNSKNHNI---GDIIKVRITDVKISTLYGELV 468
           + ++   +   G+   V IT      L G ++
Sbjct: 425 ILNEAKMVTGFGERYIVEITGGAGYDLVGRVI 456


>gi|303272277|ref|XP_003055500.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226463474|gb|EEH60752.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 525

 Score =  364 bits (934), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 118/473 (24%), Positives = 211/473 (44%), Gaps = 20/473 (4%)

Query: 15  SQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIRE 74
           S   +      +  + S GC  N  D   M    F+ G++ ++  +DAD +++NTC   E
Sbjct: 53  SSAAEDAPRRAKVSMVSLGCPKNTVDGEVMLGDLFANGFDVIDEHEDADAVIINTCGFVE 112

Query: 75  KAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYY 134
            A  +    +     +K    K G    ++V GC+AQ   E++      ++VV+G + Y 
Sbjct: 113 DAKNESVDAILAAAAMKADSEKNGKKQKIIVTGCLAQRYAEDLAEEMSEIDVVMGFEEYK 172

Query: 135 RLPELLERARFGKRVVDTDYSVEDKFERL----SIVDGGYNRKR---GVTAFLTIQEGCD 187
            LP  + ++     +   D   +    R+            RKR      A+L + EGCD
Sbjct: 173 NLPAEIGQSLGVDVLRQDDGGNKRGRVRVGTASPPFRPEALRKRLTPNHYAYLRVAEGCD 232

Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTF 247
             CTFC +P  RG   S+    +VDEA+ L D G  E+ L+ ++ N W       +    
Sbjct: 233 HKCTFCAIPGFRGKFRSKPWDSIVDEAKALADTGAKELCLIAEDTNQWGMDMKASDGRGL 292

Query: 248 SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307
           ++LL  L+ + G+  +R   ++P   S+ LI A  D+  +  Y+ +P+Q  ++  L  MN
Sbjct: 293 AELLERLAVVDGVEWIRILYAYPSYFSEELIDAIADIPQVCKYIDIPLQHITNLSLLRMN 352

Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           R         ++ ++R   P +A+ + FI GFPGET ++    M    +  + +  +F Y
Sbjct: 353 RP-PRQHTEDLLHKLRDRIPGLALRTTFISGFPGETQEEHDDLMKFCKEFKFQRLGAFAY 411

Query: 368 SPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK 427
           S   GTP +   +QV+  V+  R   L  + ++    F  + VGQ ++V+I+    +   
Sbjct: 412 SEEDGTPAAEYPDQVELAVRELRRDQLISQQQDISEDFALSRVGQELDVIIDGFNPDFDA 471

Query: 428 LVGRS----PWLQSVVLNSKNH--------NIGDIIKVRITDVKISTLYGELV 468
            VGRS    P +  +V  S+           +G + + ++    +  L    +
Sbjct: 472 WVGRSSLEAPDIDPIVFVSEPEPGSGLPALEMGQMRRCKVNGTSLFDLEAHPL 524


>gi|167757698|ref|ZP_02429825.1| hypothetical protein CLOSCI_00028 [Clostridium scindens ATCC 35704]
 gi|167664580|gb|EDS08710.1| hypothetical protein CLOSCI_00028 [Clostridium scindens ATCC 35704]
          Length = 427

 Score =  364 bits (934), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 134/438 (30%), Positives = 228/438 (52%), Gaps = 23/438 (5%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++  + + GC++N Y++  M+++    GYE V   + AD+ ++NTC +   A  K    L
Sbjct: 2   KKVALHNLGCKVNAYETEAMQELLEQHGYEIVPFKEGADVYIINTCTVTNMADRKSRQML 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL---E 141
            R R       K     +VV  GC  QA+ +EI      +++VVG      + E+L   E
Sbjct: 62  HRAR-------KMNPGAVVVACGCYVQAKRDEI---DDCIDIVVGNNRKKDIIEILSEHE 111

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
             + G +    D +  +++E L +            A++ +Q+GC++FC++C++PY RG 
Sbjct: 112 AMQEGVQKELVDINNINEYEELRLSQ----TAEHTRAYIKVQDGCNQFCSYCIIPYARGR 167

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
             SRS   V+ E  +L  NG  E+ L G +++++     D        L+ S+ EI+G+ 
Sbjct: 168 VRSRSHDSVIREVEELARNGYKEVVLTGIHLSSYGVDTGD----DLLSLILSIHEIEGIR 223

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R  +  PR +++   K    L  + P+ HL +QSG D  LK MNR +T+ EY +    
Sbjct: 224 RIRLGSLEPRIITEEFAKTIAGLPKMCPHFHLSLQSGCDATLKRMNRHYTSEEYYEKCVL 283

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R    + A+++D IVGFPGET+++F  +   +DK+ + +   FKYS R GT  + M EQ
Sbjct: 284 LRKYFDNPALTTDVIVGFPGETEEEFAQSKAFIDKVDFYETHVFKYSKRAGTRAAQMEEQ 343

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL--VGRSPWLQSVV 439
           V E+VKA R   L +  R +Q S+ +A VG   EVL+E+    +G++  VG +     + 
Sbjct: 344 VPESVKAVRSNELLELTRRKQASYEEALVGTTQEVLMEEEMICQGEIYQVGHTKEYVKIG 403

Query: 440 LNSKNHNIGDIIKVRITD 457
             ++ +    +I V I  
Sbjct: 404 QKTEENLTNQLINVEIES 421


>gi|120436584|ref|YP_862270.1| radical SAM superfamily protein, UPF0004 [Gramella forsetii KT0803]
 gi|238066249|sp|A0M3K8|RIMO_GRAFK RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|117578734|emb|CAL67203.1| radical SAM superfamily protein, UPF0004 [Gramella forsetii KT0803]
          Length = 450

 Score =  364 bits (934), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 121/459 (26%), Positives = 213/459 (46%), Gaps = 33/459 (7%)

Query: 17  IVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA 76
           +  + +   R  V + GC  NVYDS  +     +   + V+  +D +++V+NTC   + A
Sbjct: 1   MRTKSLKKNRINVVTLGCSKNVYDSEILMGQLKANDKDVVH-EEDGNIVVINTCGFIDNA 59

Query: 77  AEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL 136
            E+  + +      K      G    V V GC+++    ++ +  P V+   G      L
Sbjct: 60  KEQSVNTILEFVEKKQQ----GDVDKVFVTGCLSERYKPDLQKEIPDVDQYFGTTELPGL 115

Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
              LE           DY  E   ERL+     Y       A+L I EGCD+ C+FC +P
Sbjct: 116 LSALE----------ADYKHELIGERLTTTPKNY-------AYLKIAEGCDRPCSFCAIP 158

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256
             RG   S  +  +V EA KL  NGV E+ L+ Q++  + G  L  +K   ++LL +L +
Sbjct: 159 LMRGGHKSTPIENLVTEAEKLAANGVKELILIAQDLT-YYGLDLY-KKRNLAELLENLVK 216

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           ++G+  +R   + P      +++       +  YL +P+Q  SD +LKSM R  T  +  
Sbjct: 217 VEGIEWIRLHYAFPTGFPMDVLEVMKREPKVCNYLDIPLQHISDDLLKSMRRGTTHEKTT 276

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
           +++   R   P++AI +  IVG+PGET++ ++   + V ++ + +   F YS    T   
Sbjct: 277 KLLKEFRKTVPEMAIRTTLIVGYPGETEEHYQELKEWVKEMRFERLGCFTYSHEENTHAY 336

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQ 436
           N+ + V + VK ER   + +   +     N   +G++  V+I++  KE    +GR+ +  
Sbjct: 337 NLEDDVPQEVKQERANEIMEIQSQISWELNQQKIGEVFNVVIDR--KEGNYFIGRTEYDS 394

Query: 437 S-----VVLNSKN--HNIGDIIKVRITDVKISTLYGELV 468
                 V++++       GD   V+I +     LYGE +
Sbjct: 395 PDVDNEVLIDATTVYLKTGDYYDVKIAEAADFDLYGEPL 433


>gi|210610065|ref|ZP_03288244.1| hypothetical protein CLONEX_00430 [Clostridium nexile DSM 1787]
 gi|210152676|gb|EEA83682.1| hypothetical protein CLONEX_00430 [Clostridium nexile DSM 1787]
          Length = 430

 Score =  364 bits (934), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 126/437 (28%), Positives = 229/437 (52%), Gaps = 20/437 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +R  + + GC++N Y++  M+ +    GYE V   + AD+ ++NTC +   A  K    L
Sbjct: 2   KRAALHNLGCKVNAYETEAMQQLLEENGYEIVPFKEGADVYIINTCTVTNMADRKSRQML 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE--- 141
            R +       K   D +VV AGC  QA  E        +++V+G      L ++L+   
Sbjct: 62  HRAK-------KMNPDAIVVAAGCYVQA-KEASGEIDESIDIVIGNNKKKDLIQILDGFY 113

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
             + G+     D +   ++E + +            A++ +Q+GC++FCT+C++P+ RG 
Sbjct: 114 EKKQGQNKAVIDINHTHEYEEMHL----NKTAEHTRAYIKVQDGCNQFCTYCIIPFARGR 169

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
             SR+   VV E  +L  NG  E+ L G +++++   G+D E      L+ +++EI+G+ 
Sbjct: 170 VRSRAKEDVVREVTELAANGYQEVVLTGIHLSSY---GVDLENENLLSLILAVNEIEGIK 226

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R  +  PR +++  +K    L+ + P+ HL +QSG D  L+ MNRR+T+ EY +    
Sbjct: 227 RIRLGSLEPRIITEDFVKTISGLEKMCPHFHLSLQSGCDETLRRMNRRYTSEEYYEKCML 286

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R      A+++D IVGFPGET+++F  +   +DK+ + +   FKYS R GT  + M  Q
Sbjct: 287 LRKYFAHPALTTDVIVGFPGETEEEFEKSKAFIDKVDFYETHIFKYSKREGTKAAVMDNQ 346

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG--KLVGRSPWLQSVV 439
           + E +K  R   L +  +++++ + +  VG  +EVL+E+  K  G    VG +     V 
Sbjct: 347 IPEQIKTARSNELLELGQKKRIKYEEQFVGTTVEVLMEEQIKIDGENYQVGHTKEYVKVA 406

Query: 440 LNSKNHNIGDIIKVRIT 456
           L ++ +    ++ ++I 
Sbjct: 407 LKTEANLQNKLVDIQID 423


>gi|158523241|ref|YP_001531111.1| MiaB-like tRNA modifying enzyme YliG [Desulfococcus oleovorans
           Hxd3]
 gi|238065334|sp|A9A0B5|RIMO_DESOH RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|158512067|gb|ABW69034.1| MiaB-like tRNA modifying enzyme YliG [Desulfococcus oleovorans
           Hxd3]
          Length = 440

 Score =  364 bits (934), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 126/447 (28%), Positives = 193/447 (43%), Gaps = 16/447 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +  + S GC  N  DS  M   F ++G    +    AD++V+NTC   E A  +    + 
Sbjct: 2   KVHLTSLGCAKNQVDSELMLGAFAAEGLTVCDDPAGADVLVVNTCAFIEDAVNEAVDTIL 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +   K+     G    ++V GC+ +  GEE+    P  +   G   Y+R+ E +  A  
Sbjct: 62  ALARYKSE----GSCRRLIVCGCLPERFGEELAGALPEADFFFGTGAYHRVIEAV--AGK 115

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
              +        D     +  D         T ++ I EGCD+ CT+C++P  RG + SR
Sbjct: 116 ESTLSRCTLPPPDAVPMQAAADRRICAT-PHTVYVKIAEGCDRRCTYCIIPRLRGRQRSR 174

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
             + +V EAR L+  G  E+ L+ Q   A  G  L     + + LL +LS+  G + +R 
Sbjct: 175 PPADIVVEARGLVAAGAKELVLVAQETTA-YGADLSP-PVSLASLLMALSDAVGDIWVRV 232

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
              HP  M   LI+   + D L  Y  +PVQ  SDR+LK M RRHTA +  ++ D IR  
Sbjct: 233 LYMHPDTMDPDLIRVMTERDNLCSYFDVPVQHASDRVLKRMGRRHTAADLHRLFDDIRRA 292

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            PD  + +  +VGFPGE   DF   +D +  + +    +F YS         +   V   
Sbjct: 293 DPDAVLRTTVLVGFPGEKPADFEKLLDFITGVAFDHLGAFIYSDDEALSSHGLDGHVSSK 352

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQS-VVL 440
               R   +     +         VG    VL+E+   E G   GR    +P +   V  
Sbjct: 353 TARHRYDRVMTAQIDISSRRLAKRVGSREPVLVEEKA-EDGLFFGRAWFQAPEVDGDVCF 411

Query: 441 NS-KNHNIGDIIKVRITDVKISTLYGE 466
           +   ++  GD + VRIT      L GE
Sbjct: 412 SGAGDYAPGDRVSVRITGASAYDLTGE 438


>gi|55981144|ref|YP_144441.1| ribosomal protein S12 methylthiotransferase [Thermus thermophilus
           HB8]
 gi|81364108|sp|Q5SJ39|RIMO_THET8 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|55772557|dbj|BAD70998.1| conserved hypothetical protein [Thermus thermophilus HB8]
          Length = 434

 Score =  364 bits (934), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 129/454 (28%), Positives = 213/454 (46%), Gaps = 39/454 (8%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC   + DS ++     + GYE   S ++A+L+++NTC    +A E+    +G
Sbjct: 3   KIGFVSLGCPKALVDSEQILSRLKALGYETSPSYEEAELVIVNTCGFINEAVEESLEVIG 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
               LK +         VVV GC+     E+I  R P V  + GP    R+ E ++    
Sbjct: 63  EA--LKENGK-------VVVTGCLGAR-PEKIRERHPQVLAITGPGEVERVLEAVQVVLP 112

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
             R              L ++           A++ + EGCD  C+FC++P  RG   SR
Sbjct: 113 APR-----------DPFLDLIPPQVKLTPRHYAYVKLSEGCDHRCSFCIIPKLRGRLRSR 161

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAW-----RGKGLDGEKC---TFSDLLYSLSEI 257
             + V+ EA +L+  G  E+ L+ Q+++A+       + L G++       DLL  ++E+
Sbjct: 162 DAADVLAEAARLVATGTKELLLVAQDLSAYGVDLGHRESLWGDRPVRAELKDLLAHMAEL 221

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
              +RL Y   +P      L+    +   ++PYL +P+Q  S RIL+ M R      + +
Sbjct: 222 GAWIRLHYVYPYPHV--KDLLPLMAE-GKVLPYLDVPLQHASPRILRLMRRPGGYESHLK 278

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
            +   R V P++A+ S FIVGFPGET++DF+  +D +++    +   F YSP  G   + 
Sbjct: 279 ALKAWREVVPELALRSTFIVGFPGETEEDFQILLDFLEEAELDRVGVFAYSPVEGAEANR 338

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----P 433
           + + V E VK ER   L +      +  N   VG+ +EVL+++   E G  VGR+    P
Sbjct: 339 LPDPVPEEVKEERKARLLELQARVSLRKNQRFVGKTLEVLVDEL-PEPGLAVGRTYRDSP 397

Query: 434 WLQSVVLNSKN--HNIGDIIKVRITDVKISTLYG 465
            +  VV    +    +G+ I VRI       L+G
Sbjct: 398 GIDGVVYVETDGTVRVGERIPVRILRADTYDLHG 431


>gi|145637773|ref|ZP_01793423.1| hypothetical protein CGSHiHH_02685 [Haemophilus influenzae PittHH]
 gi|145269018|gb|EDK08971.1| hypothetical protein CGSHiHH_02685 [Haemophilus influenzae PittHH]
          Length = 445

 Score =  364 bits (934), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 135/465 (29%), Positives = 221/465 (47%), Gaps = 42/465 (9%)

Query: 20  QCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEK 79
           Q   P   FV S GC  N+ DS R+     + GY  V S ++ DL+++NTC   + A ++
Sbjct: 2   QNSTPSIGFV-SLGCPKNLVDSERILTELRTDGYNIVPSYENVDLVIVNTCGFIDSAVQE 60

Query: 80  VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL 139
               +G              +  V+V GC+  A+ ++I    P V  V GP +Y  +   
Sbjct: 61  SLEAIGEALE---------ENGRVIVTGCLG-AKEDQIREVHPKVLEVSGPHSYETVMAQ 110

Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           + +                 +  L +   G        A+L I EGCD  CTFC++P  R
Sbjct: 111 VHKY--------VSKPTHSPYTSL-VPKQGVKLTPKHYAYLKISEGCDHRCTFCIIPSMR 161

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-----------GLDGE--KCT 246
           G   SRS++QV+DEA++L + GV E+ ++ Q+ +A+                +G   K  
Sbjct: 162 GDLESRSITQVLDEAKRLAEVGVKELLVVSQDTSAYSMDLKRQEGGVKTAFWNGMPIKND 221

Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306
              L   L ++   VRL Y   +P       + A G    L+PYL +P+Q  S +ILK+M
Sbjct: 222 LMTLCKQLGKLGIWVRLHYVYPYPHVDDLIPLMADGT---LLPYLDIPLQHASPKILKAM 278

Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
            R  +     + I + R +  D+ + S FIVGFPGET++DF+  +D + +    +   FK
Sbjct: 279 KRPGSIDRTLERIKQWREICSDLTLRSTFIVGFPGETEEDFQLLLDFLKEAQLDRVGCFK 338

Query: 367 YSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK- 425
           +SP  G P ++M +QV E+VK ER     +  +E   +     +G+ ++VL+++  +E  
Sbjct: 339 FSPVEGAPATDMADQVPEDVKEERFHRFMQLQQEISANRLKQKIGKTLDVLVDEIDEEGI 398

Query: 426 -GKLVGRSPWLQSVVLNSK----NHNIGDIIKVRITDVKISTLYG 465
            G+    +P +  +V        N  +GD+IKV IT+     L+G
Sbjct: 399 IGRSKADAPEVDGLVYVDNLSGINVKVGDVIKVTITNSDEYDLWG 443


>gi|86749957|ref|YP_486453.1| hypothetical protein RPB_2840 [Rhodopseudomonas palustris HaA2]
 gi|123292522|sp|Q2IW68|RIMO_RHOP2 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|86572985|gb|ABD07542.1| conserved hypothetical protein [Rhodopseudomonas palustris HaA2]
          Length = 441

 Score =  364 bits (934), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 134/463 (28%), Positives = 211/463 (45%), Gaps = 38/463 (8%)

Query: 18  VDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA 77
           + Q   P+  FV S GC   + DS R+     ++GYE     D ADL+++NTC   + A 
Sbjct: 1   MQQAAAPKISFV-SLGCPKALVDSERIITRLRAEGYELARQHDGADLVIVNTCGFLDSAK 59

Query: 78  EKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLP 137
           ++  + +G                 V+V GC+  AE E+I    P V  + GPQ Y  + 
Sbjct: 60  QESLAAIGEAMAANGK---------VIVTGCMG-AEPEQIEAAYPGVLSITGPQQYESVL 109

Query: 138 ELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197
           + + RA+        D           + + G        A+L I EGC+  C+FC++P 
Sbjct: 110 DAVHRAKPALHNPHLDL----------VPEQGIRLTPRHYAYLKISEGCNNRCSFCIIPK 159

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE---------KCTFS 248
            RG   SRS + V+ EA KL+  GV E+ ++ Q+ +A  G  L            +  F 
Sbjct: 160 LRGDLASRSAADVLREAEKLVAAGVKELLVISQDTSA-YGVDLKYAESPWKDRSVRAKFI 218

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
           DL   L E+   VRL Y   +P       +   G    ++PYL +P Q  S  +LK M R
Sbjct: 219 DLARELGELGAWVRLHYVYPYPHVDEVIGLMTEG---KVLPYLDIPFQHASPDVLKLMKR 275

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
                +  + I R R+  PD+A+ S FIVGFPGET+ DF   +D +D+    +  +FKY 
Sbjct: 276 PAAQDKTLERIKRWRAQCPDLALRSTFIVGFPGETERDFEFLLDWLDEAEIDRLGAFKYE 335

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK--EKG 426
           P  G P + +  QV + VK ER   L  + +          VG   +++I++ G    KG
Sbjct: 336 PVAGAPSNALEGQVPDEVKQERWNRLMARQQAISARRLKRKVGTRQQIIIDEIGPTVAKG 395

Query: 427 KLVGRSPWLQSVVL--NSKNHNIGDIIKVRITDVKISTLYGEL 467
           +    +P +   V   + +   +G+I+  +I       L+G +
Sbjct: 396 RSKADAPEIDGSVYLTSRRPLRVGEIVTAKIDRADAYDLHGTV 438


>gi|299140825|ref|ZP_07033963.1| 2-methylthioadenine synthetase [Prevotella oris C735]
 gi|298577791|gb|EFI49659.1| 2-methylthioadenine synthetase [Prevotella oris C735]
          Length = 433

 Score =  364 bits (934), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 119/450 (26%), Positives = 210/450 (46%), Gaps = 35/450 (7%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDAD--LIVLNTCHIREKAAEKVYSFLGR 86
           + + GC  N+ DS  +   F + GY  V+     D  + V+NTC   E A E+  + +  
Sbjct: 8   IITMGCSKNLVDSEHLMKQFEANGYHCVHDSKRPDGEIAVINTCGFIESAKEESINTILE 67

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
             + KN     G    + V GC++Q   +E+ +  P V+   G   Y +L   L +A   
Sbjct: 68  FVHAKNE----GRLKRLYVMGCLSQRYKDELEKEIPEVDKFYGKFNYKQLLTDLGKA--- 120

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
                         E  S     +       A++ I EGCD+ C +C +P   G  +SR 
Sbjct: 121 --------------EVPSCNGRRHLTTPRHYAYVKIAEGCDRHCAYCAIPLITGKHVSRP 166

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
              ++ E R+L+++GV E  ++ Q +  + G  +DG++   +DL+  +++IKG+  +R  
Sbjct: 167 KEDILQEVRELVNDGVKEFQIIAQELT-YYGVDIDGQR-HIADLISDMADIKGVKWIRLH 224

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
            ++P      L+    +   +  YL + +Q  S+ +L +M+R  +  E  ++I +IR   
Sbjct: 225 YAYPNQFPLELLDVIREKPNVCKYLDIALQHISNHMLNAMHRHVSKEETIELIKKIREAV 284

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP-GSNMLEQVDEN 385
           P I I +  +VGFPGET++DF   ++ V    + +  +F YS   GT   ++  + V   
Sbjct: 285 PGIHIRTTLLVGFPGETEEDFNELVEFVKWAKFERMGAFAYSEEEGTYSANHYEDDVTPE 344

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSP----WLQSVVLN 441
           VK  RL  L    +E         VG++++V+I++  KE    +GR+      +   VL 
Sbjct: 345 VKQHRLDTLMAVQQEISADVEAEKVGKVMKVIIDR--KEGDYYIGRTEFCSSEVDPEVLI 402

Query: 442 ---SKNHNIGDIIKVRITDVKISTLYGELV 468
                   +G+   V+ITD +   LYG +V
Sbjct: 403 PAAGVRLRVGNFYDVKITDSEEFDLYGHVV 432


>gi|225387767|ref|ZP_03757531.1| hypothetical protein CLOSTASPAR_01537 [Clostridium asparagiforme
           DSM 15981]
 gi|225046128|gb|EEG56374.1| hypothetical protein CLOSTASPAR_01537 [Clostridium asparagiforme
           DSM 15981]
          Length = 491

 Score =  363 bits (933), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 139/500 (27%), Positives = 235/500 (47%), Gaps = 67/500 (13%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           +P +  + + GC++N Y++  M+    ++GYE V     AD+ ++NTC +   A  K   
Sbjct: 1   MP-KAALHNLGCKVNAYETEAMQQQLEARGYEIVPFDQKADVYIINTCSVTNIADRKSRQ 59

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            L R +       K   D +VV AGC  Q   + +   +  V+++VG     RL ++L+ 
Sbjct: 60  MLHRAK-------KMNPDSVVVAAGCYVQVAADALKEDA-AVDIIVGNNQKARLADILDE 111

Query: 143 ARFGKR---VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
              G R       D S  +++E L  VD   +R R   AF+ +Q+GC++FC++C++PY R
Sbjct: 112 FFSGGREDVSYVVDISHTNEYEALH-VDRIADRTR---AFIKVQDGCNQFCSYCIIPYAR 167

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE---------------- 243
           G   SR   +V++E R L   G  E+ L G +++++     + E                
Sbjct: 168 GRVRSRRPEEVLEEVRTLAAQGYKEMVLTGIHLSSYGLDFENPESALIAGDYKAEENALY 227

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
           +     L+  +S ++G+ R+R  +  PR ++         +  L P+ HL +QSG D  L
Sbjct: 228 RPWLLRLIQEVSGVEGIGRIRLGSLEPRIITREFAAELAKIPKLCPHFHLSLQSGCDATL 287

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           K MNR +   EYR+    +R    + AI++D IVGFPGET+++F AT   ++++ + +  
Sbjct: 288 KRMNRHYNTEEYRERCGILREAFDNPAITTDVIVGFPGETEEEFAATRQYLEQVHFYEMH 347

Query: 364 SFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK 423
            FKYS R GT  + M +QV E VKAER   L +  +     +    VG + E+L+E+  +
Sbjct: 348 VFKYSRREGTRAAVMPDQVPEPVKAERSDKLLELEKRMSREYRQGFVGTVQEILLEEPAE 407

Query: 424 EKGK--LVGRSPWLQSVVLNS-------------------KNHNI-------------GD 449
             G   +VG +       + +                    +  +             G 
Sbjct: 408 TGGIPCVVGHTRQYVRAAVPAPVAGNTVKSAALSADAGNTPDAAVLQGLTEGLTAPVRGR 467

Query: 450 IIKVRITD-VKISTLYGELV 468
           I+K RIT  +   TL  EL+
Sbjct: 468 IVKARITGFLDEETLLAELI 487


>gi|198282274|ref|YP_002218595.1| 30S ribosomal protein S12 methylthiotransferase [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|238065274|sp|B5EK28|RIMO_ACIF5 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|198246795|gb|ACH82388.1| MiaB-like tRNA modifying enzyme YliG [Acidithiobacillus
           ferrooxidans ATCC 53993]
          Length = 442

 Score =  363 bits (933), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 135/455 (29%), Positives = 200/455 (43%), Gaps = 38/455 (8%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V S GC     DS R+     ++GY  V    +AD++V+NTC   + A E+    +G   
Sbjct: 9   VVSLGCPKATVDSERILTQLRAEGYLLVGDYANADVVVVNTCGFIDAAVEESLEAIGEAL 68

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEG-EEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147
           +             VVV GC+   EG + +    P V  V GP     + + +  A    
Sbjct: 69  DENGK---------VVVTGCLGAREGGDFVRGAHPKVLAVTGPNQAGAVLDAIHAALP-- 117

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
                     D +  L +   G        A+L I EGC++ C+FC++P  RG  +SR+ 
Sbjct: 118 -------PAHDPYTDL-VPPQGLRLTPPHYAYLKISEGCNQSCSFCIIPSMRGKLVSRAP 169

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYSLSEIKG 259
             ++ EA  L+  G  E+ ++ Q+  A+      R    +G   K   +DL  +L E+  
Sbjct: 170 DDILREAEALVAGGAKELLVISQDTGAYGVDRKYRTAFHNGRPLKTRITDLCAALGELGV 229

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
            VRL Y   +P    D L+    +   ++PYL +P+Q GS RILK+M R   A +    I
Sbjct: 230 WVRLHYVYPYPH--IDELLPLMAE-GKILPYLDVPLQHGSPRILKAMRRPAAAEKTLDRI 286

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
              R   PD+ I S FIVGFPGETD DF   +D +      +   F YS   G P + + 
Sbjct: 287 LGWRQAVPDLIIRSTFIVGFPGETDADFAELLDFLRAAELDRVGCFAYSAVEGAPANAIA 346

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWL 435
             V E VK ER                   VGQ   VL++   +  G+++ RS    P +
Sbjct: 347 GAVPEPVKEERRAAFMAVQEAISRQRLQRRVGQRQRVLVDAMAR-GGRVIARSASDAPEI 405

Query: 436 QSVVLNSKNH--NIGDIIKVRITDVKISTLYGELV 468
             VV   K     +GD ++V IT      LYG +V
Sbjct: 406 DGVVHLGKAAGLQVGDWVEVAITRADAHDLYGMVV 440


>gi|332970851|gb|EGK09830.1| 2-methylthioadenine synthetase [Psychrobacter sp. 1501(2011)]
          Length = 511

 Score =  363 bits (933), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 128/481 (26%), Positives = 207/481 (43%), Gaps = 34/481 (7%)

Query: 6   KLIGVAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLI 65
            +       +Q V    V  +    S GC   + DS R+       GY   +  + ADL+
Sbjct: 40  SVEQSGQQANQPVTGSSVAPKVGFVSLGCPKALVDSERIITELTRDGYRVASDYEGADLV 99

Query: 66  VLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVN 125
           V+NTC   E A ++    +G              +  V+V GC+   + E+I    P V 
Sbjct: 100 VVNTCGFIESAVQESLDAIGEA---------ISQNGKVIVTGCLG-KDAEKIRDMHPAVL 149

Query: 126 VVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEG 185
            V G   Y  +   + +     + +    + + K + + +   G        A+L I EG
Sbjct: 150 AVTGAHAYDEVITAVSKHAPMPQAIKDKKAYDPKIDLIDLA--GVKLTPSHYAYLKISEG 207

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE-- 243
           C+  CTFC++P  RG  +SR + +V++EA  L   GV E+ ++ Q+ +A  G  L  +  
Sbjct: 208 CNHRCTFCIIPSLRGDLVSRPIDEVMNEAMALKKAGVKELLIISQDTSA-YGLDLKYKTT 266

Query: 244 -------KCTFSDLLYSLSEIKGLVRLRYTTSHP-RDMSDCLIKAHGDLDVLMPYLHLPV 295
                  K  F DL  +L+++   VRL Y   +P  D    L+   GD   L+PYL +P+
Sbjct: 267 FWNGMPLKSKFFDLCEALAKVGIWVRLHYVYPYPHVDKVVELMAKPGDRGGLLPYLDIPL 326

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
           Q  S  +LK+M R   +      I + R + PDI I S F+VGFPGET++DF   +D + 
Sbjct: 327 QHASPSVLKAMKRPAHSENTLARIQKWREINPDIVIRSTFVVGFPGETEEDFEYLLDWLK 386

Query: 356 KIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIE 415
           +    +   F YS   G   +++   V E VK ER        ++         VG+ + 
Sbjct: 387 QAKLDRVGCFTYSEIEGAVANDLPNPVPEEVKQERYERFMAVQQQISEQKIQDKVGKTMT 446

Query: 416 VLIEKHGKEKGKLVGRS----PWLQSVVLNSK-------NHNIGDIIKVRITDVKISTLY 464
           VL+++   E    + RS    P +   V              +GD+I V I +     L+
Sbjct: 447 VLVDEIDNEDYIAICRSYADAPEIDGHVYVDDIVQNGQVALKVGDMITVTIDEASEYDLF 506

Query: 465 G 465
            
Sbjct: 507 A 507


>gi|70728629|ref|YP_258378.1| ribosomal protein S12 methylthiotransferase [Pseudomonas
           fluorescens Pf-5]
 gi|123734889|sp|Q4KHA5|RIMO_PSEF5 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|68342928|gb|AAY90534.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Pseudomonas
           fluorescens Pf-5]
          Length = 445

 Score =  363 bits (933), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 130/459 (28%), Positives = 216/459 (47%), Gaps = 34/459 (7%)

Query: 21  CIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKV 80
                +    S GC   + DS R+      +GY+ V++  DAD++V+NTC   + A  + 
Sbjct: 6   APANPKVGFVSLGCPKALVDSERILTQLRMEGYDVVSTYQDADVVVVNTCGFIDSAKAES 65

Query: 81  YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140
              +G         IKE G   V+V GC+   EG  I    P V  V GPQ Y ++   +
Sbjct: 66  LEVIGEA-------IKENG--KVIVTGCMGVEEGN-IRDVHPSVLAVTGPQQYEQVVNAV 115

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
                 K+  +    +        +   G        A+L I EGC+  C+FC++P  RG
Sbjct: 116 HEVVPPKQDHNPLIDL--------VPPQGIKLTPRHYAYLKISEGCNHSCSFCIIPSMRG 167

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLY 252
             +SR +  V+DEA++L+ +GV E+ ++ Q+ +A+      R    +G   K   ++L  
Sbjct: 168 KLVSRPVGDVLDEAQRLVKSGVKELLVISQDTSAYGVDVKYRTGFWNGAPVKTRMTELCE 227

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
           +LS +   VRL Y   +P       + A G    ++PYL +P Q  S ++LK+M R    
Sbjct: 228 ALSTLGVWVRLHYVYPYPHVDELIPLMAAG---KILPYLDIPFQHASPKVLKAMKRPAFE 284

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
            +    I   R + P++ I S FIVGFPGET++DF+  ++ + +    +   F+YSP  G
Sbjct: 285 DKTLARIKNWREICPELIIRSTFIVGFPGETEEDFQYLLNWLTEAQLDRVGCFQYSPVEG 344

Query: 373 TPGSNM-LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLV 429
            P +++ LE V + VK +R        +E   +     +G+ IEVLI++  +    G+  
Sbjct: 345 APANDLDLEVVPDEVKQDRWERFMAHQQEISSARLQQRIGKEIEVLIDEVDENGAVGRCF 404

Query: 430 GRSPWLQSVVLN--SKNHNIGDIIKVRITDVKISTLYGE 466
             +P +   V    + +   GD +  R+TD     L+ E
Sbjct: 405 FDAPEIDGNVFIDGAGDLKPGDKVWCRVTDADEYDLWAE 443


>gi|94310303|ref|YP_583513.1| hypothetical protein Rmet_1361 [Cupriavidus metallidurans CH34]
 gi|122987974|sp|Q1LNN2|RIMO_RALME RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|93354155|gb|ABF08244.1| conserved hypothetical protein [Cupriavidus metallidurans CH34]
          Length = 456

 Score =  363 bits (933), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 118/468 (25%), Positives = 200/468 (42%), Gaps = 46/468 (9%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P +    S GC   + DS ++     ++GY    + D ADL+V+NTC   ++A ++    
Sbjct: 10  PPKVGFVSLGCPKALVDSEQIITQLRAEGYSISGTYDGADLVVVNTCGFIDEAVQESLDA 69

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQ----AEGEEILRRSPIVNVVVGPQTYYRLPEL 139
           +G                 V+V GC+      A  + +    P V  V GP     + + 
Sbjct: 70  IGEALTENGK---------VIVTGCLGAKKDAAGHDIVSAVHPKVLAVTGPHALGEVMQA 120

Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           +                 D F  L     G        A+L I EGC+  C+FC++P  R
Sbjct: 121 VHTHLP---------KPHDPFTDLVPA-AGIKLTPKHYAYLKISEGCNHRCSFCIIPSMR 170

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLL 251
           G  +SR +++V+ EA  L   GV E+ ++ Q+ +A+      R    +G   K   ++L+
Sbjct: 171 GDLVSRPVAEVMLEAENLFKAGVKELLVISQDTSAYGVDVKYRTGFWNGRPLKTRMTELV 230

Query: 252 YSLSEI----KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307
            +L E+       VRL Y   +P       +    +   ++PYL +P+Q     +LK M 
Sbjct: 231 AALGELASQYGAWVRLHYVYPYPHVDEIIPLM---NQGNVLPYLDVPLQHAHPDVLKRMK 287

Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           R   A +    I   R V PD+ I S FI GFPGET+++F+  +D + +    +   F Y
Sbjct: 288 RPANAEKTLDRIRAWREVCPDLTIRSTFIAGFPGETEEEFQTLLDFIAEAELDRVGCFAY 347

Query: 368 SPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-- 425
           SP  G   +++   + + V+ ER     +   E         VGQ + VL+++  ++   
Sbjct: 348 SPVEGATANDLPGALPDEVREERRARFMEVAEEVSARRLQRKVGQTLRVLVDEVNQDGGI 407

Query: 426 GKLVGRSPWLQSVVLNSKNHNI------GDIIKVRITDVKISTLYGEL 467
           G+    +P +  +V              GD + V+IT      L+GE+
Sbjct: 408 GRSSADAPEIDGLVYIDPAAKASQRYKTGDFVNVKITGADGHDLWGEV 455


>gi|306821073|ref|ZP_07454691.1| MiaB family tRNA modification enzyme [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
 gi|304550909|gb|EFM38882.1| MiaB family tRNA modification enzyme [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
          Length = 452

 Score =  363 bits (933), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 135/463 (29%), Positives = 234/463 (50%), Gaps = 32/463 (6%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +     + GC++N Y++  +E++F   GY   +  D +D+ ++NTC +   +  K    +
Sbjct: 4   KTIATYTLGCKVNQYETNAVEEIFTQNGYTLTDFDDKSDIYIINTCTVTSMSDRKSRQVI 63

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R +       K   D +VVV GC AQ + + I+ +   VN+VVG +   ++ + +++  
Sbjct: 64  RRAK-------KNNKDAVVVVMGCYAQNDPDAII-KIEDVNLVVGTKDKNKIFDEVQKIT 115

Query: 145 FGKRVV-DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
              +VV  T+   E +FE LS+        +   AF+ IQ+GCD++C++C++PYTRG   
Sbjct: 116 NHDKVVRVTNIMDELEFENLSVTSY----TKNTRAFVKIQDGCDRYCSYCIIPYTRGRIR 171

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-----------------RGKGLDGEKCT 246
           SR++  +V E + L DNG  E+ L G ++ ++                 +      E  +
Sbjct: 172 SRNIGDIVKEVQSLSDNGYKEVVLTGIHIASYGKDLKKSKDKLIPIIHSQKDDFIQEDIS 231

Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306
             D++  +S+IK + R+R  +  P  +SD  ++    ++   P+ HL +QSG D  L+ M
Sbjct: 232 LIDVIEEVSKIKDIHRVRIGSVEPIIISDDFLQRLTKIEKFCPHFHLSLQSGCDDTLRRM 291

Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
           NRR+T  EY+  + +IR      AI++D I GFPGET ++F  T   +  I   +   F 
Sbjct: 292 NRRYTTDEYKNAVLKIRQYFDSPAITTDIITGFPGETQEEFEKTYSYLRDINLYEMHIFP 351

Query: 367 YSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG 426
           +S R GT   +M  Q+D + K ER   L     + +  F    +G+I +VL E+  KE+ 
Sbjct: 352 FSRRSGTKAYDMKNQIDNDTKHERSEKLIALANKNKNEFEQNLIGKIFDVLFEQ--KEEQ 409

Query: 427 KLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
              G +     + + S+N   G +I VRI   +   L GEL++
Sbjct: 410 YYHGYTKNYVKIHVKSENDLSGKLIDVRIIGFEDGRLIGELII 452


>gi|118443956|ref|YP_878198.1| tRNA modifying protein [Clostridium novyi NT]
 gi|238065369|sp|A0Q0P6|RIMO_CLONN RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|118134412|gb|ABK61456.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Clostridium novyi
           NT]
          Length = 444

 Score =  363 bits (933), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 119/449 (26%), Positives = 219/449 (48%), Gaps = 22/449 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +  + S GC  N  DS  +      +  + VN  + AD+I++NTC   E + ++    + 
Sbjct: 5   KIGLISLGCDKNRIDSELLLGKLNEKN-DIVNDPNKADIIIVNTCGFIESSKQESIDTIL 63

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +   K    K      ++  GC+ Q   +E+L   P +++++G   Y  +   ++    
Sbjct: 64  EMAKYKEENCKM-----IIATGCLTQRYSKELLELIPEIDIMLGVNDYANIQNYIDDFFN 118

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGY-NRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
               +      + K+  +SI +G          A++ I EGC+  CT+C++P  RG   S
Sbjct: 119 EHNKI-----CQCKYSDISINEGKRILTTAKHMAYIRISEGCNNLCTYCIIPKIRGKYRS 173

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           RS+  +++EA++L + GV E+ L+GQ+  A  G  L  ++   S LL  LS I+ +  +R
Sbjct: 174 RSIESIINEAKELANMGVKELILVGQDT-AIYGSDLY-KENRLSQLLRELSNIEDIEWIR 231

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
              ++P +++D LI+   + D +  YL +P+Q  S+ +LK MNR+ +       I ++R 
Sbjct: 232 ILYTYPEEITDELIEEIKNNDKVCKYLDIPIQHISNTVLKRMNRKSSKELITDNIKKMRK 291

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
               + + +  IVGFPGET+D+F    + V++I +     FKYS    T  + M +QV E
Sbjct: 292 EIDGLCLRTSIIVGFPGETEDEFNELKEFVEEIKFDNLGVFKYSQEEDTAAARMKDQVSE 351

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVL 440
           ++K ERL  +    +      N   + ++ +VL+E    +    +GR+    P +   + 
Sbjct: 352 DLKEERLATIMSIQQNVSSKINKNKLEKVYKVLVEGQNDK--YYIGRNYQMVPEIDGAIF 409

Query: 441 NSKN--HNIGDIIKVRITDVKISTLYGEL 467
              +   N+G+ + V+ITD     L G +
Sbjct: 410 FKCDKILNVGEFVYVKITDTLEYDLIGVV 438


>gi|281425611|ref|ZP_06256524.1| RNA modification enzyme, MiaB-family [Prevotella oris F0302]
 gi|281400198|gb|EFB31029.1| RNA modification enzyme, MiaB-family [Prevotella oris F0302]
          Length = 433

 Score =  363 bits (933), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 119/450 (26%), Positives = 208/450 (46%), Gaps = 35/450 (7%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDAD--LIVLNTCHIREKAAEKVYSFLGR 86
           + + GC  N+ DS  +   F + GY  V+     D  + V+NTC   E A E+  + +  
Sbjct: 8   IITMGCSKNLVDSEHLMKQFEANGYHCVHDSKRPDGEIAVINTCGFIESAKEESINTILE 67

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
             + KN     G    + V GC++Q   +E+ +  P V+   G   Y +L   L +A   
Sbjct: 68  FVHAKNE----GRLKRLYVMGCLSQRYKDELEKEIPEVDKFYGKFNYKQLLTDLGKA--- 120

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
                         E  S     +       A++ I EGCD+ C +C +P   G  +SR 
Sbjct: 121 --------------EVPSCNGRRHLTTPRHYAYVKIAEGCDRHCAYCAIPLITGKHVSRP 166

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
              ++ E R+L+ +GV E  ++ Q +  + G  +DG++   +DL+  +++IKG+  +R  
Sbjct: 167 KEDILQEVRELVSDGVKEFQIIAQELT-YYGVDIDGQR-HIADLISDMADIKGVKWIRLH 224

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
            ++P      L+    +   +  YL + +Q  S+ +L +M+R  +  E  ++I +IR   
Sbjct: 225 YAYPNQFPLELLDVIREKPNVCKYLDIALQHISNHMLNAMHRHVSKEETIELIKKIREAV 284

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP-GSNMLEQVDEN 385
           P I I +  +VGFP ET++DF   ++ V    + +  +F YS   GT   ++  + V   
Sbjct: 285 PGIHIRTTLLVGFPDETEEDFNELVEFVKWAKFERMGAFAYSEEEGTYSANHYEDDVPAE 344

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVLN 441
           VK  RL  L    +E         VG++++V+I++  KE    +GR+    P +   VL 
Sbjct: 345 VKQHRLDTLMAIQQEISADVEAEKVGKVMKVIIDR--KEGDYYIGRTEFCSPEVDPEVLI 402

Query: 442 ---SKNHNIGDIIKVRITDVKISTLYGELV 468
                   +G+   V ITD +   LYG +V
Sbjct: 403 PTAGVRLRVGNFYDVEITDSEEFDLYGHVV 432


>gi|257463539|ref|ZP_05627932.1| MiaB-like tRNA modifying enzyme YliG [Fusobacterium sp. D12]
 gi|317061094|ref|ZP_07925579.1| 2-methylthioadenine synthetase [Fusobacterium sp. D12]
 gi|313686770|gb|EFS23605.1| 2-methylthioadenine synthetase [Fusobacterium sp. D12]
          Length = 444

 Score =  363 bits (933), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 127/450 (28%), Positives = 216/450 (48%), Gaps = 20/450 (4%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQ-GYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           F   S GC  N+ DS  +  +  ++ G++  N +++AD++++NTC     A ++    + 
Sbjct: 3   FAFISLGCSKNLVDSENLTGILVNRKGFQLTNDIEEADMVLINTCGFIGDAKKESIETIL 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +   K   +K      +VV GC+AQ   EE+L+  P ++ V+G     ++  +++    
Sbjct: 63  EVAEYKQQNLK-----KIVVCGCLAQRYAEELLQEIPEIDAVIGTGEIDKIERVVDEILQ 117

Query: 146 GKRVVDTDYSVEDKFERLSIVD-GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            K+VV+T       F+ L   D          TA+L I EGC++ CT+C++P  RG   S
Sbjct: 118 DKKVVET-----KSFDFLPNADTDRLLTTPPHTAYLKISEGCNRRCTYCIIPQLRGNLRS 172

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           RS   +++EAR L+  GV E+ LL Q      G    G+K    DLL  L +I+ L  +R
Sbjct: 173 RSKEDILEEARHLVAGGVRELNLLAQETTE-YGIDRYGKKA-LPDLLRELVKIEELDWIR 230

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
                P+ ++D LI      + +  Y  +P+Q  S  +L+ M R  T  + ++++ +IR 
Sbjct: 231 SYYMFPKSITDELIAVMKTEEKICKYFDIPIQHISSNVLRRMGRAITGEQTKELLYKIRR 290

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             P+    +  IVGFPGET+++F      V++  +     F+YS    T    M  QV E
Sbjct: 291 EIPEAVFRTSLIVGFPGETEEEFEELKSFVEEFQFDYIGVFQYSREEDTLAYTMEAQVPE 350

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GR----SPWLQSVV 439
            +KA R   L     E   + N   +G+ +EVLI+    E   ++ GR    +  +   V
Sbjct: 351 EIKARRQAELINLQNEIAEAKNRKLLGREVEVLIDGISSESEYMLEGRLKTQALDIDGKV 410

Query: 440 LNSKN-HNIGDIIKVRITDVKISTLYGELV 468
           L S+    +G+I+ V +         G +V
Sbjct: 411 LTSEGTAQVGEIVHVVLEQNFEYDFIGRIV 440


>gi|28211649|ref|NP_782593.1| Fe-S oxidoreductase [Clostridium tetani E88]
 gi|28204091|gb|AAO36530.1| Fe-S oxidoreductase [Clostridium tetani E88]
          Length = 433

 Score =  363 bits (933), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 136/445 (30%), Positives = 233/445 (52%), Gaps = 17/445 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    + GC++N Y++  M + F   GY+ V+    AD+ V+NTC +     +K    + 
Sbjct: 2   KVAFTTLGCRVNQYETEAMTEKFIKSGYDIVDFDKLADVYVINTCTVTNMGDKKSRQMIS 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R R       +   +  + V GC +Q   E++  + P V+VV+G +    + + +E    
Sbjct: 62  RAR-------RINNNATIAVVGCYSQVAPEKV-SQIPGVDVVIGTRNKGDIVKKVEEYIN 113

Query: 146 GKRVV--DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            K  V    D    + FE L+I       K    AFL IQ+GC+ FC++C++P+ RG   
Sbjct: 114 KKEQVILVEDVLKNNVFEELNIESY----KDKTRAFLKIQDGCNSFCSYCLIPFARGGIC 169

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           S+   +V++E +KL+++G  E+TL G  + +  G     +      LL  + +I+G+ R+
Sbjct: 170 SKEPKKVIEEIKKLVEHGFKEVTLSGIQI-SLYGNDFQ-DNWDLITLLEEIDKIEGIERV 227

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R  +  P+   D +I    +L  L P+ HL +QSG D  LK MNR +T  EYR I+ ++R
Sbjct: 228 RIGSISPKYFKDDIIDRFSNLKKLCPHFHLSLQSGCDETLKRMNRSYTTEEYRYIVQKLR 287

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
                ++I++D IVGFPGE++++F+ T   +++I  ++   FKYSPR GT  + + EQ+D
Sbjct: 288 EKIKGVSITTDIIVGFPGESEEEFKKTHRFLEEIKLSKMHIFKYSPRSGTKAAEIQEQID 347

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVLNS 442
            N+K ER   L +  ++ +  F +  + Q ++VL E+    E+    G +P    VV  S
Sbjct: 348 GNIKDERSNSLIELNKKLEKDFMEKFLEQELQVLYEEKSNLEENSYEGYTPNYIKVVTKS 407

Query: 443 KNHNIGDIIKVRITDVKISTLYGEL 467
             +  G I+   I +VK   + G+L
Sbjct: 408 SMNLQGKIVNTIIKEVKEDYVLGKL 432


>gi|190150967|ref|YP_001969492.1| hypothetical protein APP7_1698 [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|307257716|ref|ZP_07539474.1| Ribosomal protein S12 methylthiotransferase rimO [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|307262124|ref|ZP_07543776.1| Ribosomal protein S12 methylthiotransferase rimO [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|307264323|ref|ZP_07545912.1| Ribosomal protein S12 methylthiotransferase rimO [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|238065277|sp|B3H2N3|RIMO_ACTP7 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|189916098|gb|ACE62350.1| hypothetical protein APP7_1698 [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|306863781|gb|EFM95706.1| Ribosomal protein S12 methylthiotransferase rimO [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|306868192|gb|EFN00017.1| Ribosomal protein S12 methylthiotransferase rimO [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|306870387|gb|EFN02142.1| Ribosomal protein S12 methylthiotransferase rimO [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 443

 Score =  363 bits (933), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 127/463 (27%), Positives = 211/463 (45%), Gaps = 41/463 (8%)

Query: 21  CIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKV 80
              P   F+ S GC  N+ DS R+     + GY  + S ++ADL+++NTC   + A ++ 
Sbjct: 2   STTPNIGFI-SLGCPKNLVDSERILTELRTDGYNIIPSYENADLVIVNTCGFIDSAVQES 60

Query: 81  YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140
              +G                 V+V GC+  A+  +I    P V  + GP +Y  + + +
Sbjct: 61  LEAIGEALEENGK---------VIVTGCLG-AKENQIREVHPKVLEITGPHSYEAVMKHV 110

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
            +              E       +   G        A+L I EGCD  CTFC++P  RG
Sbjct: 111 HKY---------VPRPERNIYTSLVPAQGVKLTPKHYAYLKISEGCDHRCTFCIIPSMRG 161

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNV----------NAWRGKGLDGE--KCTFS 248
              SR + QV+DEA++L D+GV E+ ++ Q+           N  +    +G   K    
Sbjct: 162 DLDSRPIVQVLDEAKRLADSGVKELLIVSQDTSAYALDQSKENQNKTVFWNGAPIKNNLI 221

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
            L   L  +   VRL Y   +P       + A G    ++PYL +P+Q  S ++LK+M R
Sbjct: 222 TLCEQLGSLGIWVRLHYVYPYPHVDDLIPLMAQG---KILPYLDIPLQHASPKVLKAMKR 278

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
                   + I + R + P++ + S FIVGFPGET++DF+  +D +++    +   FK+S
Sbjct: 279 PGAIDRTLERIKKWREICPELTLRSTFIVGFPGETEEDFQMLLDFLEEAQLDRVGCFKFS 338

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--G 426
           P  G   + M +QV E+VK ER     +  +    +     VG+ + V+I++  +E   G
Sbjct: 339 PVEGAVATEMADQVSEDVKEERFHRFMQVQQRISAARLQQKVGKTLAVIIDEIDEEGIIG 398

Query: 427 KLVGRSPWLQSVVLNSK----NHNIGDIIKVRITDVKISTLYG 465
           + +  +P +  VV           +G +I V IT+     L+G
Sbjct: 399 RSMADAPEIDGVVYVDNLSEQEVKVGQVISVSITNADEYDLWG 441


>gi|260592452|ref|ZP_05857910.1| RNA modification enzyme, MiaB-family [Prevotella veroralis F0319]
 gi|260535498|gb|EEX18115.1| RNA modification enzyme, MiaB-family [Prevotella veroralis F0319]
          Length = 433

 Score =  363 bits (933), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 120/449 (26%), Positives = 201/449 (44%), Gaps = 35/449 (7%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEKVYSFLGR 86
           + + GC  N+ DS  +  +F   GY   +       ++ V+NTC   E A E+  + +  
Sbjct: 8   IVTMGCSKNLVDSEIIMKLFEENGYHCTHDAKRPQGEIAVINTCGFIEAAKEESINTILE 67

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
             N K    K G    + V GC++Q   +E+    P V+   G   Y +L   L +A   
Sbjct: 68  FINRK----KNGQLNRLYVMGCLSQRYKDELEAELPEVDKFYGKFNYKQLLTDLGKASI- 122

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
                            S     +       A++ I EGCD+ C +C +P   G   SR 
Sbjct: 123 ----------------PSCNGTRHLTTPRHYAYIKIAEGCDRHCAYCAIPLITGRHHSRP 166

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
           + ++++E + L+  GV E  ++ Q +  + G  LDG K   ++L+  +++IKG+  +R  
Sbjct: 167 IDEILNEVKDLVVQGVKEFQIIEQELT-YYGVDLDG-KHHITELISRMADIKGVKWIRLH 224

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
            ++P      L+      D +  YL +  Q  SD +L  M+R  T  E   +I  IR   
Sbjct: 225 YAYPNQFPLDLLDVIAKKDNVCKYLDIAFQHISDNMLTRMHRHVTKQETLDLIREIRCRV 284

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP-GSNMLEQVDEN 385
           P I + +  +VGFPGET++DF    + V +  + +  +F YS   GT   ++  + V E 
Sbjct: 285 PGIHLRTTLLVGFPGETEEDFEELKEFVTEARFERMGAFAYSEEEGTYSATHYKDDVPEE 344

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVV-- 439
           VK  RL  L    +          VG++ +V+I++  KE    +GR+    P +   V  
Sbjct: 345 VKQSRLDELMAIQQGISEELEAEKVGKVFKVIIDR--KEGEYYIGRTEYCSPEVDPEVLI 402

Query: 440 -LNSKNHNIGDIIKVRITDVKISTLYGEL 467
            ++ K   IG+   VRIT      L+GE+
Sbjct: 403 LVSEKQLRIGNFYNVRITGSDEFDLFGEI 431


>gi|167587080|ref|ZP_02379468.1| MiaB-like tRNA modifying enzyme YliG [Burkholderia ubonensis Bu]
          Length = 453

 Score =  363 bits (933), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 126/469 (26%), Positives = 207/469 (44%), Gaps = 48/469 (10%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC   + DS ++     ++GYE   + D ADL+V+NTC   ++A ++    +G
Sbjct: 6   KVGFVSLGCPKALVDSEQIITQLRAEGYEISGTYDGADLVVVNTCGFIDEAVQESLDAIG 65

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEE----ILRRSPIVNVVVGPQTYYRLPELLE 141
                            V+V GC+   +       I    P V  V GP     + + + 
Sbjct: 66  EALTENGK---------VIVTGCLGAKKSASGSGLIEEVHPKVLAVTGPHAVGEVMQAVH 116

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
                           D F  L    G     R   A+L I EGC+  CTFC++P  RG 
Sbjct: 117 SHLP---------KPHDPFVDLVPAAGIKLTPRHY-AYLKISEGCNHRCTFCIIPSMRGD 166

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYS 253
            +SR +++V+ EA  L  +GV E+ ++ Q+ +A+      R    +G+  K   +DL+ +
Sbjct: 167 LVSRPVAEVMLEAENLFKSGVKELLVISQDTSAYGVDVKYRTGFWNGKPIKTRMTDLVAA 226

Query: 254 LSEI----KGLVRLRYTTSHPRDMSDCLIKAHGDLD-VLMPYLHLPVQSGSDRILKSMNR 308
           L E+       VRL Y   +P       + A G     ++PYL +P Q     +LK M R
Sbjct: 227 LGELAAQYGAWVRLHYVYPYPSVDEVIPLMAEGPFKGHVLPYLDVPFQHAHPEVLKRMKR 286

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
              A +  + + + R + PD+ I S FI GFPGET+  F   +D + +    +   F YS
Sbjct: 287 PANAEKVLERVQKWREICPDLTIRSTFIAGFPGETEAQFETLLDFIREAELDRVGCFAYS 346

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL 428
           P  G   + +   + ++V+  R     +   E      +  VG+ ++VLI++   E G  
Sbjct: 347 PVEGATANELDGALPDDVREARRARFMEVAEEVSAKRIERKVGKTLKVLIDEVSDEGG-- 404

Query: 429 VGRS----PWLQSVVLN------SKNHNIGDIIKVRITDVKISTLYGEL 467
           +GR+    P +  VV        SK + +GD + V+IT      L+GE+
Sbjct: 405 IGRTAADAPEIDGVVYVEPAQKASKRYKVGDFVSVKITGADGHDLWGEV 453


>gi|217033440|ref|ZP_03438870.1| hypothetical protein HP9810_1g54 [Helicobacter pylori 98-10]
 gi|216944145|gb|EEC23573.1| hypothetical protein HP9810_1g54 [Helicobacter pylori 98-10]
          Length = 430

 Score =  363 bits (932), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 141/442 (31%), Positives = 237/442 (53%), Gaps = 23/442 (5%)

Query: 33  GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92
           GC MN  DS  +        Y+  + +  ADLI++NTC +REK   K++S +G+   +K 
Sbjct: 2   GCAMNSRDSEHLLSELSKLDYKETSDLKAADLILINTCSVREKPERKLFSEIGQFAKIKK 61

Query: 93  SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDT 152
                  +  + V GC A   G +IL+++P V+ V+G +   ++ +++ + +  +  +D 
Sbjct: 62  ------PNAKIGVCGCTASHMGADILKKAPSVSFVLGARNVSKISQVIHKEKAVEVAIDY 115

Query: 153 DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVD 212
           D S        +     + +K  + + L I  GCDK C +C+VP+TRG EIS  +  ++ 
Sbjct: 116 DES--------AYAFEFFEKKAQIRSLLNISIGCDKKCAYCIVPHTRGKEISIPMDLILK 167

Query: 213 EARKLIDNGVCEITLLGQNVNAWRGKGL-DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPR 271
           EA KL  NG  E+ LLGQNVN +  +   +  K  FSDLL  LSEI+G+ R+R+T+ HP 
Sbjct: 168 EAEKLASNGTKELMLLGQNVNNYGARFSSEHAKVDFSDLLDKLSEIQGIERIRFTSPHPL 227

Query: 272 DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAI 331
            M+D  ++       +   +H+P+QSGS  +LK M R ++   +   ++R++++ P++ I
Sbjct: 228 HMNDAFLERFAKNPKVCKSIHMPLQSGSSVVLKMMRRGYSKEWFLNRVERLKALVPEVGI 287

Query: 332 SSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERL 391
           S+D IVGFP E+D DF  TM++++K+ +   +SF YSPR  T      E+V   V + RL
Sbjct: 288 STDIIVGFPNESDKDFEDTMEVLEKVRFDTLYSFIYSPRPFTEAGAWKERVPLEVSSSRL 347

Query: 392 LCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV---GRSPWLQSVVLN-SKNHNI 447
             LQ + +E         VG+   VL+E   +   ++V   GRS   + + +   +  N 
Sbjct: 348 ERLQNRHKEILEEKAKLEVGKTHVVLVENRREINNQIVGFEGRSDTGKFIEVACKEKRNP 407

Query: 448 GDIIKVRITDVKISTLYGELVV 469
           G++++V I         G L+ 
Sbjct: 408 GELVRVEIVSHS----KGRLIA 425


>gi|146340736|ref|YP_001205784.1| ribosomal protein S12 methylthiotransferase [Bradyrhizobium sp.
           ORS278]
 gi|238065296|sp|A4YUI3|RIMO_BRASO RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|146193542|emb|CAL77559.1| conserved hypothetical protein [Bradyrhizobium sp. ORS278]
          Length = 445

 Score =  363 bits (932), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 128/466 (27%), Positives = 205/466 (43%), Gaps = 40/466 (8%)

Query: 18  VDQCIVPQ---RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIRE 74
           + Q   P    +    S GC   + DS R+     ++GYE     D AD++++NTC   +
Sbjct: 1   MQQGSAPNSAPKISFVSLGCPKALVDSERIITRLRAEGYELARKHDGADVVIVNTCGFLD 60

Query: 75  KAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYY 134
            A ++  + +G              +  V+V GC+  AE E+I +  P V  + GPQ Y 
Sbjct: 61  SAKQESLAAIGSA---------MAENGKVIVTGCMG-AEPEQIEQAYPGVLSITGPQQYE 110

Query: 135 RLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCV 194
            + + + RA                     +   G        A+L I EGC+  C+FC+
Sbjct: 111 SVLDAVHRA----------SPPVHNPHLDLVPPQGIKLTPRHYAYLKISEGCNNRCSFCI 160

Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE---------KC 245
           +P  RG  +SR  + V+ EA +L+  GV E+ ++ Q+ +A  G  +            + 
Sbjct: 161 IPKLRGDLVSRPAADVLREAERLVAAGVKELLVISQDTSA-YGLDIKYAESPWKDRSVRA 219

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
            F DL   L E+   VRL Y   +P      +I    D   ++PYL +P Q  S  +LK+
Sbjct: 220 RFLDLARELGELGAWVRLHYVYPYPHVD--EVIGLMTD-GKVLPYLDIPFQHASPNVLKA 276

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           M R     +    I   R   PD+A+ S FIVGFPGETD+DF   +D +D+    +   F
Sbjct: 277 MRRPAAQDKTLDRIKAWRGACPDLALRSTFIVGFPGETDEDFAYLLDWLDEAEIDRLGCF 336

Query: 366 KYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-- 423
           KY P  G   + +  QV + VK ER   L  + ++         VG   +++I++ G   
Sbjct: 337 KYEPVAGATSNALPGQVPDEVKQERWNALMARQQKISARRLKRKVGTRQQIIIDEVGPTV 396

Query: 424 EKGKLVGRSPWLQSVVLNSK--NHNIGDIIKVRITDVKISTLYGEL 467
            KG+    +P +   V  S       G+I+  +I       L+G +
Sbjct: 397 AKGRSKADAPEIDGAVYLSSRRPLRAGEIVTAKIERADEYDLHGTV 442


>gi|254252283|ref|ZP_04945601.1| 2-methylthioadenine synthetase [Burkholderia dolosa AUO158]
 gi|124894892|gb|EAY68772.1| 2-methylthioadenine synthetase [Burkholderia dolosa AUO158]
          Length = 453

 Score =  363 bits (932), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 127/469 (27%), Positives = 206/469 (43%), Gaps = 48/469 (10%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC   + DS ++     ++GYE   + D ADL+V+NTC   ++A ++    +G
Sbjct: 6   KVGFVSLGCPKALVDSEQIITQLRAEGYEISGTYDGADLVVVNTCGFIDEAVQESLDAIG 65

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEE----ILRRSPIVNVVVGPQTYYRLPELLE 141
                            V+V GC+   +       I    P V  V GP     + + + 
Sbjct: 66  EALTENGK---------VIVTGCLGAKKSASGSGLIEEVHPKVLAVTGPHAVGEVMQAVH 116

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
                           D F  L    G     R   A+L I EGC+  CTFC++P  RG 
Sbjct: 117 SHLP---------KPHDPFVDLVPAAGIKLTPRHY-AYLKISEGCNHRCTFCIIPSMRGD 166

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYS 253
            +SR +++V+ EA  L  +GV E+ ++ Q+ +A+      R    +G+  K   +DL+ +
Sbjct: 167 LVSRPVAEVMLEAENLFKSGVKELLVISQDTSAYGVDVKYRTGFWNGKPIKTRMTDLVAA 226

Query: 254 LSEI----KGLVRLRYTTSHPRDMSDCLIKAHGDLD-VLMPYLHLPVQSGSDRILKSMNR 308
           L E+       VRL Y   +P       + A G     ++PYL +P Q     +LK M R
Sbjct: 227 LGELAAQYGAWVRLHYVYPYPSVDEVIPLMAEGPFKGHVLPYLDVPFQHAHPEVLKRMKR 286

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
              A +  + + + R + PD+ I S FI GFPGET+  F   +D + +    +   F YS
Sbjct: 287 PANAEKVLERVQKWREICPDLTIRSTFIAGFPGETEAQFDTLLDFIREAELDRVGCFAYS 346

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL 428
           P  G   + +   + + V+  R     +   E         VG+ ++VLI++ G E G  
Sbjct: 347 PVEGATANELDGALPDEVREARRARFMEVAEEVSAKRIQRKVGKTLKVLIDEVGDEGG-- 404

Query: 429 VGRS----PWLQSVVLN------SKNHNIGDIIKVRITDVKISTLYGEL 467
           +GR+    P +  VV        SK + +GD + V+IT      L+GE+
Sbjct: 405 IGRTAADAPEIDGVVYVEPAAKASKRYKVGDFVSVKITGADGHDLWGEV 453


>gi|226945811|ref|YP_002800884.1| ribosomal protein S12 methylthiotransferase [Azotobacter vinelandii
           DJ]
 gi|226720738|gb|ACO79909.1| Ribosomal protein S12 methylthiotransferase [Azotobacter vinelandii
           DJ]
          Length = 440

 Score =  363 bits (932), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 129/449 (28%), Positives = 201/449 (44%), Gaps = 33/449 (7%)

Query: 30  KSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRN 89
            S GC     DS R+     ++GY  V S ++AD++V+NTC   + A  +    +G    
Sbjct: 11  VSLGCPKATVDSERILTQLRTEGYRIVPSYEEADVVVVNTCGFIDSAKAESLDAIGEALA 70

Query: 90  LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149
                        V+V GC+     E I    P V  V GPQ Y ++   +      K  
Sbjct: 71  ENGK---------VIVTGCMG-VSEEAIRNVHPSVLAVTGPQQYEQVVSAVHEVAPPK-- 118

Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209
                +  D F  L    G     R   A+L I EGC+  C FC++P  RG  +SR   +
Sbjct: 119 -----ADHDPFVDLVPPQGIRLTPRHY-AYLKISEGCNHSCAFCIIPSMRGKLVSRPAGE 172

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYSLSEIKGLV 261
           V+ EA +L+  GV E+ ++ Q+ +A+      R    +G   K    +L   L  +   V
Sbjct: 173 VLGEAERLVGAGVQELLVIAQDTSAYGVDLRYRTDFWNGRPVKTRLLELCEELGRMGVWV 232

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           RL Y   +P       + A G    ++PYL +P+Q  S +ILK+M R     +    I +
Sbjct: 233 RLHYVYPYPSVDELIPLMAAG---KILPYLDIPLQHASPKILKAMKRPAFEDQTLARIRK 289

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
            R + P++ I S FIVGFPGET++DF+  +D + +    +   F+YS   G P + +   
Sbjct: 290 WREICPELTIRSTFIVGFPGETEEDFQYLLDWLSEAQLDRVGCFQYSAVDGAPANELEGA 349

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPWLQSVV 439
           V E VK ER        +    +     +GQ IEVLI++  ++   G+    +P +   V
Sbjct: 350 VAEEVKQERWERFMAHQQAISAARLQRRIGQEIEVLIDEVDEQGAVGRSWADAPEIDGNV 409

Query: 440 LNSKN--HNIGDIIKVRITDVKISTLYGE 466
                     GD ++VR+TD     L+ E
Sbjct: 410 YVDSAQVLKPGDKVRVRVTDADEYDLWAE 438


>gi|315924411|ref|ZP_07920633.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Pseudoramibacter
           alactolyticus ATCC 23263]
 gi|315622290|gb|EFV02249.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Pseudoramibacter
           alactolyticus ATCC 23263]
          Length = 432

 Score =  363 bits (932), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 136/430 (31%), Positives = 225/430 (52%), Gaps = 17/430 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + ++    + GC++N +D+  M+  F   GYE V     AD+ V+NTC +      K   
Sbjct: 1   MKKKVAFYNLGCKVNDFDTESMKACFLKVGYEVVPFDTAADVYVVNTCTVTHLGDRKSRQ 60

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            L + R       ++  + ++V AGC AQ   EEI  +   V++++G     R+ + + R
Sbjct: 61  MLRKAR-------RKNPNAVIVAAGCYAQVAPEEI-SKIEEVDLILGTAHRNRVVDEVAR 112

Query: 143 AR--FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
            +    ++V  +D S +  FE + I +     +R   AFL +Q+GC++FCT+C+VPY RG
Sbjct: 113 FQEDHHRQVYVSDISEQHIFEDMPIAE----HRRHTRAFLKVQDGCNQFCTYCIVPYARG 168

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
              SR +  V +E + L  +G  E  L G ++ A  GK + G     + L+ ++  I G+
Sbjct: 169 RIRSRRIDSVCEEVQLLASDGFKEFVLSGIHI-ASYGKDMPGGPDLLT-LIRAVDAIPGV 226

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R  +  P  M++  +    ++    P+ HL +QSG D +L+ MNR +T  +Y +I+ 
Sbjct: 227 ARIRLGSIEPLLMTETFVAGLSEIKSFCPHFHLSLQSGCDAVLRRMNRHYTTEQYFEIVQ 286

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           RIR      AI++D IVGFPGETD++F+AT D +  + + +   FKYS R GTP ++   
Sbjct: 287 RIRRYFSKPAITTDVIVGFPGETDEEFQATKDFMTAVNFYKVHVFKYSKRHGTPAADFEG 346

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440
           QVDE  K  R   L    REQ+ +F     G+ + VL E+  +   ++ G +P    V +
Sbjct: 347 QVDETTKHRRSQDLIALSREQEQAFLKENAGERMPVLFEQL-QANHRIEGHTPNYIPVRM 405

Query: 441 NSKNHNIGDI 450
            +    IG I
Sbjct: 406 FADGKKIGQI 415


>gi|117922061|ref|YP_871253.1| ribosomal protein S12 methylthiotransferase [Shewanella sp. ANA-3]
 gi|238066601|sp|A0L1C8|RIMO_SHESA RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|117614393|gb|ABK49847.1| MiaB-like tRNA modifying enzyme YliG [Shewanella sp. ANA-3]
          Length = 480

 Score =  363 bits (932), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 135/471 (28%), Positives = 209/471 (44%), Gaps = 36/471 (7%)

Query: 11  AHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC 70
           A        +     R    S GC  N+ DS R+       GYE  NS D+ADL+++NTC
Sbjct: 23  AASADLANAESATGNRIGFVSLGCPKNLVDSERILTQLRIDGYEVTNSYDNADLVIVNTC 82

Query: 71  HIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGP 130
              + A E+    +                  V+V GC+  A+  +I    P V  + GP
Sbjct: 83  GFIDAAVEESLDAVREALEENGK---------VIVTGCLG-AKENQIREVHPDVLEITGP 132

Query: 131 QTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190
            +Y  + + + +               + F  L I   G        A+L I EGCD  C
Sbjct: 133 HSYEAVLKHVHKY--------VPKPEHNPFTSL-IPQTGVKLTPKHYAYLKISEGCDNRC 183

Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE------- 243
           TFC++P  RG   SR    V+DEA++L+++GV EI ++ Q+ +A  GK   G        
Sbjct: 184 TFCIIPALRGDLDSRPAGSVLDEAKRLVESGVQEILVVSQDTSA-YGKDKGGRTDFWNGM 242

Query: 244 --KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
             K   + L   L ++   VRL Y   +P       + A G   +++PYL +P+Q  S R
Sbjct: 243 PVKQDITSLARQLGKMGAWVRLHYIYPYPWVDDLIPLMAEG---LILPYLDIPMQHASPR 299

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
           ILK M R        + I R R + PD+ I S FIVGFPGET++DF   +D + +    +
Sbjct: 300 ILKMMKRPGRVDRQLEAIQRWREICPDLVIRSTFIVGFPGETEEDFEMLLDFLREARLDR 359

Query: 362 AFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKH 421
              FKYS   G   + + E + E+VK +R     +   E         VG+ +++LI+  
Sbjct: 360 VGCFKYSEVEGAVANTIAELISEDVKEDRYHRFMEVQAEISAERLARFVGRTMDILIDDV 419

Query: 422 GKEK--GKLVGRSPWLQSVVLNSK--NHNIGDIIKVRITDVKISTLYGELV 468
            +E   G+    +P +  +V  +       G +++  IT      L+ ELV
Sbjct: 420 DEEGAIGRSFADAPEIDGMVFINGETELEPGMLVRAVITHSDEHDLWAELV 470


>gi|33860662|ref|NP_892223.1| Fe-S oxidoreductase [Prochlorococcus marinus subsp. pastoris str.
           CCMP1986]
 gi|81576526|sp|Q7V3H3|RIMO_PROMP RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|33633604|emb|CAE18561.1| possible Fe-S oxidoreductase [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
          Length = 454

 Score =  363 bits (932), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 129/453 (28%), Positives = 217/453 (47%), Gaps = 26/453 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +      GC+ N+ D+  M+ +   +GYE  N ++DA+++V+NTC   E A E+    + 
Sbjct: 15  KVAFSHVGCEKNLVDTEHMQGLLDKEGYEVGNDIEDANVVVVNTCSFIETAREESIRKII 74

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                            V+VAGC+AQ   EE+L+  P +  +VG   Y ++ ++++R   
Sbjct: 75  EF---------TDQGKEVIVAGCMAQHFKEELLKEMPEIKGLVGTGDYQKIAKVIKRVEK 125

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G+ V +     E   +        +  K    A+L I EGCD  C FC++P  RG + SR
Sbjct: 126 GEIVNEVSKIPEFIADEKIP---RFVDKNKFVAYLRIAEGCDYKCAFCIIPKLRGPQRSR 182

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            +  +V EA+ L   G+ EI L+ Q +    G+ + G K + + LL  LS++  +  +R 
Sbjct: 183 DIESIVSEAKNLAAQGIQEIILISQ-ITTNYGQDIYG-KPSLARLLKELSKV-SVPWIRI 239

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
             ++P  ++D +IK+  D + ++PY  LP+Q     +LKSMNR   A     I+ +IR  
Sbjct: 240 HYAYPTGLTDEVIKSFKDSNNIVPYFDLPLQHSHPDVLKSMNRPWQASLNESILSQIREQ 299

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P   + +  IVGFPGE    F+  +D + +  +     F +SP  GT   ++  +V   
Sbjct: 300 IPSAVLRTSLIVGFPGENQKHFQHLLDFLHRHEFDHVGVFIFSPEEGTSAFDLPNRVPSE 359

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVL- 440
           V   R   +    +      N   VG  I+VL+EK  + K +L+GRS    P +   V+ 
Sbjct: 360 VADARKDNIISIQQNISKKKNQLYVGTTIKVLVEKISENK-ELIGRSYNFAPEIDGNVIL 418

Query: 441 -----NSKNHNIGDIIKVRITDVKISTLYGELV 468
                  + + IG  ++  I       LYGE++
Sbjct: 419 SIKNYEDEKNYIGKFVEANICFADEYDLYGEVI 451


>gi|300021843|ref|YP_003754454.1| MiaB-like tRNA modifying enzyme YliG [Hyphomicrobium denitrificans
           ATCC 51888]
 gi|299523664|gb|ADJ22133.1| MiaB-like tRNA modifying enzyme YliG [Hyphomicrobium denitrificans
           ATCC 51888]
          Length = 461

 Score =  363 bits (932), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 135/478 (28%), Positives = 219/478 (45%), Gaps = 40/478 (8%)

Query: 5   IKLIGVAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADL 64
           +K+   A   +   D    P+  FV S GC   + DS R+     ++GY   +  + AD+
Sbjct: 6   VKVNAKARRAAHGSDTAAAPKVGFV-SLGCPKALVDSERIITKLRAEGYMIASDYEGADV 64

Query: 65  IVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIV 124
           +V+NTC   + A ++    +G              +  V+V GC    E   I    P V
Sbjct: 65  VVVNTCGFLDSAKKESLDAIGEA---------MNANGRVIVTGCFGVEE-NRIRDAHPGV 114

Query: 125 NVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQE 184
             V GP  Y ++ E +          D    + D F  L +   G        A+L I E
Sbjct: 115 LAVTGPHQYEQVVEAVH---------DAVPPLHDPFVDL-VPPEGLRLTPRHYAYLKISE 164

Query: 185 GCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE- 243
           GC+  C+FC++P  RG   SR  + V+ EA +L++ GV E+ ++ Q+ +A+       E 
Sbjct: 165 GCNNRCSFCIIPALRGDLASRPSNHVMGEAERLVNAGVKELLVISQDTSAYGLDIKYAES 224

Query: 244 -------KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQ 296
                  K  F DL  +L ++   VR+ Y   +P       + A G    ++PYL +P Q
Sbjct: 225 AWKGAPLKARFLDLSRALGDLGVWVRMHYVYPYPHVDDVIPLMADG---KILPYLDIPFQ 281

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
             S  +LK+M R     +  + I R R V PD+AI S FIVGFPGET++DF   +D + +
Sbjct: 282 HASPAVLKAMRRPAAQEKTAERIRRWREVCPDLAIRSTFIVGFPGETEEDFAFLLDWLKE 341

Query: 357 IGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEV 416
            G  +A  FKY P  G   + +   V + VK ER        ++   +  +  +GQ I+V
Sbjct: 342 AGINRAGCFKYEPVEGAKANAIDGAVPDEVKEERWHRFMAVQKDVSSAQLERKLGQTIDV 401

Query: 417 LIEKHGKEKGKLVGRS----PWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468
           LI++  ++    +GRS    P +   V  +   ++  GDI++ ++ +     L+ E V
Sbjct: 402 LIDEVDEDGA--IGRSKWDAPEIDGNVFLNGERDVNAGDIVRAKVVEAGDYDLWAERV 457


>gi|313886493|ref|ZP_07820209.1| ribosomal protein S12 methylthiotransferase RimO [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|312924039|gb|EFR34832.1| ribosomal protein S12 methylthiotransferase RimO [Porphyromonas
           asaccharolytica PR426713P-I]
          Length = 443

 Score =  363 bits (932), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 118/453 (26%), Positives = 202/453 (44%), Gaps = 28/453 (6%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDD--ADLIVLNTCHIREKAAEK 79
           ++  +  V S GC  N+ DS  +       GY   +  D+   ++ V+NTC   + A E+
Sbjct: 1   MIANQIDVISLGCSKNLVDSDALMRRLAQYGYTLRHDPDELTGEIAVVNTCGFIQAAQEE 60

Query: 80  VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL 139
             + +  +   K    KEG    + V GC+ +   EE+    P V+ + G   + +L   
Sbjct: 61  SINLILSLIEAK----KEGRIRAIYVMGCLGERFREELTAELPEVDKIYGKYDWKQLITD 116

Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           L  A              D    LS      +      +++ I EGCD+ C++C +P   
Sbjct: 117 LGPALSA-----------DDATPLSYRTPPPSVTPQHYSYIKISEGCDRTCSYCAIPLIT 165

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G   SR + ++V E  K +  G  E  ++ Q+   + G  L  E+   + LL  L++++G
Sbjct: 166 GRHHSRPMEEIVREIEKRVATGCREFQIIAQDST-YYGVDLYQEQA-IATLLDRLAQVEG 223

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           +  LR   ++P      L+      D +  YL L +Q  S+ +L+ M R+ T  E   ++
Sbjct: 224 VHWLRLHYAYPNHFPLELLDVMAKHDNICKYLDLALQHSSNHMLQLMRRQITREETIVLL 283

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
           +RIR   P IA+ +  +VG PGETD+DF   +D V ++ + +  +F+YS   GT      
Sbjct: 284 ERIRKQVPGIALRTTMMVGHPGETDEDFADLLDFVSQMRFERLGAFQYSHEEGTYAYKHY 343

Query: 380 -EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PW 434
            + V   VK ER   L         S N   VG  +EV++++  +E+   VGR+    P 
Sbjct: 344 QDDVPPEVKQERYDALMSLQETISTSINSRKVGTTLEVVVDR--EEEDYYVGRTQYDSPE 401

Query: 435 LQSVVL--NSKNHNIGDIIKVRITDVKISTLYG 465
           +   V+  +     +G   +  IT V+   L  
Sbjct: 402 VDGEVILSSDSPLRVGSFYQAEITGVEEYDLIA 434


>gi|323526085|ref|YP_004228238.1| MiaB-like tRNA modifying enzyme YliG [Burkholderia sp. CCGE1001]
 gi|323383087|gb|ADX55178.1| MiaB-like tRNA modifying enzyme YliG [Burkholderia sp. CCGE1001]
          Length = 461

 Score =  363 bits (932), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 125/469 (26%), Positives = 207/469 (44%), Gaps = 48/469 (10%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R  + S GC   + DS ++     ++GYE   + D ADL+V+NTC   ++A ++    +G
Sbjct: 14  RIGIVSLGCPKALVDSEQIITQLRAEGYEISGTYDGADLVVVNTCGFIDEAVQESLDAIG 73

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEE----ILRRSPIVNVVVGPQTYYRLPELLE 141
                         +  V+V GC+   +       I    P V  V GP     + + + 
Sbjct: 74  EA---------LNENGKVIVTGCLGAKKSASGSGLIEEVHPKVLAVTGPHAVGEVMQHVH 124

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
                           D F  L     G        A+L I EGC+  CTFC++P  RG 
Sbjct: 125 THLP---------KPHDPFVDLVPA-AGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGD 174

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYS 253
            +SR +++V+ EA  L  +GV E+ ++ Q+ +A+      R    +G+  K   +DL+ +
Sbjct: 175 LVSRPVAEVMLEAENLFKSGVKELLVISQDTSAYGVDVKYRTGFWNGKPIKTRMTDLVGA 234

Query: 254 LSEI----KGLVRLRYTTSHPRDMSDCLIKAHGDLD-VLMPYLHLPVQSGSDRILKSMNR 308
           L E+       VRL Y   +P       + A G     ++PYL +P Q     +LK M R
Sbjct: 235 LGELAAQYGAWVRLHYVYPYPSVDEVIPMMAAGPYKGHVLPYLDVPFQHAHPEVLKRMKR 294

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
              A +  + +   R + PD+ I S FI GFPGET++ F   +D + +    +   F YS
Sbjct: 295 PANAEKVMERVKAWRDMCPDLTIRSTFIAGFPGETEEQFETLLDFIREAELDRVGCFAYS 354

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL 428
           P  G   + +   + + V+ ER     +   E         VG+ ++VL+++   + G  
Sbjct: 355 PVEGASANELDGALPDEVREERRARFMEVAEEVSAKRIAKKVGKTLKVLVDEVNADGG-- 412

Query: 429 VGRS----PWLQSVVLNS------KNHNIGDIIKVRITDVKISTLYGEL 467
           VGR+    P +  VV  +      K + +GD + V+IT      L+GE+
Sbjct: 413 VGRTAADAPEIDGVVYIAPAVKASKRYKVGDFVSVKITGADGHDLWGEV 461


>gi|119478493|ref|ZP_01618455.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [marine gamma
           proteobacterium HTCC2143]
 gi|119448474|gb|EAW29722.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [marine gamma
           proteobacterium HTCC2143]
          Length = 480

 Score =  363 bits (931), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 124/464 (26%), Positives = 212/464 (45%), Gaps = 32/464 (6%)

Query: 18  VDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA 77
           +   +  Q+    S GC   + DS R+       GY+   +  +AD++V+NTC   + A 
Sbjct: 28  MTDTLQKQKVGFISLGCPKALVDSERILTQLKLDGYDISPNYHEADVVVVNTCGFIDSAK 87

Query: 78  EKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQ-AEGEEILRRSPIVNVVVGPQTYYRL 136
           ++    +               +  V+V GC+ +  + E I   +P V  V GP  Y  +
Sbjct: 88  QESMDAISEA---------INENGKVIVTGCMGKGTDAESIKAANPDVLSVSGPADYTSV 138

Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
            + +       + +    +  +    L I   G        A+L I EGC+  CTFC++P
Sbjct: 139 MDAVH------QFIPPTAATHNPLIDL-IPPQGVKLTPQHYAYLKISEGCNHRCTFCIIP 191

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDG--EKCTFS 248
             RG  +SR ++ VV EA+ L+  GV E+ ++ Q+ +A+      +   +DG   +    
Sbjct: 192 DMRGDLVSRPIADVVSEAKTLVAAGVRELLVISQDTSAYGVDVKYKLDFVDGQARETRML 251

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
           DL  +L E+   VRL Y   +P       + A G    ++PYL +P Q  S RILK M R
Sbjct: 252 DLAVALGELGVWVRLHYVYPYPHVDKIIPLMAAG---KILPYLDIPFQHASPRILKLMKR 308

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
                +  + I   R++ P++ I S F+VGFPGET+DDF+  +D + +    +   FKYS
Sbjct: 309 PGNQEKVLERIKNWRTICPELVIRSTFVVGFPGETEDDFQLLLDWLQEAQLDRVGCFKYS 368

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--G 426
           P  G   +++ + V E ++ +R     +  +          +GQ +EVLI++  ++   G
Sbjct: 369 PVEGAKANDLPDHVPEAIQQQRWERFMETQQHISAQRLQQRIGQQLEVLIDEVDEQGAVG 428

Query: 427 KLVGRSPWLQSVVLNSK--NHNIGDIIKVRITDVKISTLYGELV 468
           +    +P +   V      +  +GD + V IT      L+ E V
Sbjct: 429 RCYADAPEIDGKVYLDDFTDTFVGDALLVTITGADEYDLWAEPV 472


>gi|126695455|ref|YP_001090341.1| Fe-S oxidoreductase [Prochlorococcus marinus str. MIT 9301]
 gi|238066596|sp|A3PAG5|RIMO_PROM0 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|126542498|gb|ABO16740.1| possible Fe-S oxidoreductase [Prochlorococcus marinus str. MIT
           9301]
          Length = 454

 Score =  363 bits (931), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 121/453 (26%), Positives = 217/453 (47%), Gaps = 26/453 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +      GC+ N+ D+  M+ +   +GYE  ++++DA+++V+NTC   E A E+    + 
Sbjct: 15  KIAFSHVGCEKNLVDTEHMQGLLHKEGYEVDSNINDANVVVVNTCSFIETAREESIRKIL 74

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                            V+VAGC+AQ   +E+++  P +  +VG   Y ++ ++L+R   
Sbjct: 75  EY---------TNQGKEVIVAGCMAQHFKDELIKEIPEIKGLVGTGDYQKIAKVLDRVEK 125

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G+ V +     E   +        +  K    A+L I EGC+  C FC++P  RG + SR
Sbjct: 126 GEIVNEVSKIPEFIADEEMP---RFVDKNKFVAYLRIAEGCNYNCAFCIIPKLRGPQRSR 182

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           ++  ++ EA+ L   G+ EI L+ Q +    G+ + G K + + LL  LS++  +  +R 
Sbjct: 183 TIESILSEAKSLAKKGIQEIILISQ-ITTNYGQDIYG-KPSLAKLLNELSKVP-IPWIRI 239

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
             ++P  ++D +I+A  D   ++PY  LP+Q     +LKSMNR   A     I+++IR  
Sbjct: 240 HYAYPTGLTDEVIRAFKDSKNIVPYFDLPLQHSHPDVLKSMNRPWQASLNESILEKIREE 299

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P   + +  IVGFPGE  + F   +  +D+  +     F +SP  GT   ++  +V   
Sbjct: 300 IPSAVLRTSLIVGFPGEKKEHFEHLLQFLDRHKFDHVGVFIFSPEEGTAAFHLPNKVSPE 359

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVLN 441
           V   R   +    +      N   VG  +++++E+   +  +L+GRS    P +   V+ 
Sbjct: 360 VAEARKDNVISVQQNISREKNQIYVGSKMKIMVEQIS-DNNELIGRSYNFAPEIDGTVIL 418

Query: 442 SKNHN------IGDIIKVRITDVKISTLYGELV 468
           S          IG  ++  I+      LYGE +
Sbjct: 419 SVKEKIDLKNYIGKFVEANISFADEYDLYGETI 451


>gi|257453136|ref|ZP_05618435.1| Fe-S oxidoreductase [Fusobacterium sp. 3_1_5R]
 gi|317059671|ref|ZP_07924156.1| Fe-S oxidoreductase [Fusobacterium sp. 3_1_5R]
 gi|313685347|gb|EFS22182.1| Fe-S oxidoreductase [Fusobacterium sp. 3_1_5R]
          Length = 436

 Score =  363 bits (931), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 121/441 (27%), Positives = 226/441 (51%), Gaps = 16/441 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +R    + GC++N Y+S  +++    +GYE V+    AD+ ++N+C +   A  K  + L
Sbjct: 5   KRVAFYTLGCKVNQYESESIKNQLLQKGYEEVDFESIADIYIVNSCTVTSIADRKTRNML 64

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R +       K+     V+V GC A+   +++L     ++ V+G +    + + ++   
Sbjct: 65  RRAK-------KQNPSGKVIVTGCYAETNRKDLL-EMEEIDFVIGNKDKSAVAKFVQEIH 116

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
             +RV   +   ++K  +          +    A++ IQ+GC++FC++C +P+ RG   S
Sbjct: 117 TQERVEKKESIFQEKEYQ---EYEFATFREMTRAYVKIQDGCNEFCSYCKIPFARGKSRS 173

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R   +V++E  KL+  G  EI L+G N+    GK L+G+  +F  L+  + +   L R+R
Sbjct: 174 RKQEKVLEEIDKLLMEGFQEIILIGINLG-DYGKDLEGD-ISFETLVQEILKRDLLKRVR 231

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
             + +P  +++  I    +   +MP+LH+ +QS  D +LK+M R++        +  +R 
Sbjct: 232 IGSVYPDRITNSFISLF-ENPKMMPHLHISLQSCDDTVLKNMKRKYGRELILNSLLSLRE 290

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             P +  ++D IVGFPGET++ F+ T   +++IG++    F YS R GT  S M  ++  
Sbjct: 291 KVPSMEYTADIIVGFPGETEEMFQNTYASLEEIGFSHLHIFPYSDREGTLASRMKNKLSP 350

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
            +K ER+  L+   ++ +     A +G+ IEVLIE+  ++ G   G SP    V +   N
Sbjct: 351 EIKKERVTILENLQKKVEEDRRKAYLGKTIEVLIEE--EKDGYWWGYSPNYLRVKIKGDN 408

Query: 445 HNIGDIIKVRITDVKISTLYG 465
            ++  +I+V I  V+   L  
Sbjct: 409 ISVNSVIQVEIEKVEKGVLVA 429


>gi|17546355|ref|NP_519757.1| hypothetical protein RSc1636 [Ralstonia solanacearum GMI1000]
 gi|81504984|sp|Q8XYX0|RIMO_RALSO RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|17428652|emb|CAD15338.1| putative 2-methylthioadenine synthetase protein [Ralstonia
           solanacearum GMI1000]
          Length = 453

 Score =  363 bits (931), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 119/475 (25%), Positives = 204/475 (42%), Gaps = 46/475 (9%)

Query: 17  IVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA 76
           + D      +    S GC   + DS ++     ++GYE   +   ADL+V+NTC   ++A
Sbjct: 1   MSDVSTQSPKVGFVSLGCPKALVDSEQIITQLRAEGYEISGTYGGADLVVVNTCGFIDEA 60

Query: 77  AEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQ----AEGEEILRRSPIVNVVVGPQT 132
            ++    +G                 V+V GC+      A  + I    P V  V GP  
Sbjct: 61  VQESLDAIGEALAENGK---------VIVTGCLGAKKDAAGQDIITSVHPKVLAVTGPHA 111

Query: 133 YYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTF 192
              + E +                 D F  L +   G        A+L I EGC+  C+F
Sbjct: 112 LGEVMEAVHTHLP---------KPHDPFIDL-VPPQGIKLTPKHYAYLKISEGCNHRCSF 161

Query: 193 CVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--K 244
           C++P  RG  +SR +++V+ EA  L+  GV E+ ++ Q+ +A+      R    +G   K
Sbjct: 162 CIIPSMRGDLVSRPVAEVMLEAENLLKAGVKELLVISQDTSAYGVDVKFRTGFWNGRPLK 221

Query: 245 CTFSDLLYSLSEI----KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300
              ++L+ +L E+       VRL Y   +P       + A G    ++PYL +P+Q    
Sbjct: 222 TRMTELVGALGELAAQYGAWVRLHYVYPYPSVDEVMPLMAEG---KVLPYLDVPLQHAHP 278

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
            +LK M R   A +    I   R V P++ I S FI GFPGET+++F+  +D + +    
Sbjct: 279 EVLKRMKRPANAEKTLDRIRAWREVCPELTIRSTFIAGFPGETEEEFQTLLDFIAEAELD 338

Query: 361 QAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
           +   F YSP  G   +++   + + V+ ER     +             VG+ + VL+++
Sbjct: 339 RVGCFAYSPVEGATANDLPGALPDEVREERRARFMEVAERVSARRLQRKVGKTLRVLVDE 398

Query: 421 HGKEK--GKLVGRSPWLQSVVLNSKNHNI------GDIIKVRITDVKISTLYGEL 467
             ++   G+    +P +  +V  +           GD + V+IT      L+GE+
Sbjct: 399 VNQDGGIGRSSADAPEIDGLVYIAPPSKPYKRYKAGDFVSVKITGADGHDLWGEV 453


>gi|299066647|emb|CBJ37840.1| putative 2-methylthioadenine synthetase [Ralstonia solanacearum
           CMR15]
          Length = 453

 Score =  363 bits (931), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 119/475 (25%), Positives = 204/475 (42%), Gaps = 46/475 (9%)

Query: 17  IVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA 76
           + D      +    S GC   + DS ++     ++GYE   +   ADL+V+NTC   ++A
Sbjct: 1   MSDVSTQSPKVGFVSLGCPKALVDSEQIITQLRAEGYEISGTYGGADLVVVNTCGFIDEA 60

Query: 77  AEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQ----AEGEEILRRSPIVNVVVGPQT 132
            ++    +G                 V+V GC+      A  + I    P V  V GP  
Sbjct: 61  VQESLDAIGEALAENGK---------VIVTGCLGAKKDAAGQDIITSVHPKVLAVTGPHA 111

Query: 133 YYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTF 192
              + E +                 D F  L +   G        A+L I EGC+  C+F
Sbjct: 112 LGEVMEAVHTHLP---------KPHDPFIDL-VPPQGIKLTPKHYAYLKISEGCNHRCSF 161

Query: 193 CVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--K 244
           C++P  RG  +SR +++V+ EA  L+  GV E+ ++ Q+ +A+      R    +G   K
Sbjct: 162 CIIPSMRGDLVSRPVAEVMLEAENLLKAGVKELLVISQDTSAYGVDVKFRTGFWNGRPLK 221

Query: 245 CTFSDLLYSLSEI----KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300
              ++L+ +L E+       VRL Y   +P       + A G    ++PYL +P+Q    
Sbjct: 222 TRMTELVGALGELAAQYGAWVRLHYVYPYPSVDEVMPLMAEG---KVLPYLDVPLQHAHP 278

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
            +LK M R   A +    I   R V P++ I S FI GFPGET+++F+  +D + +    
Sbjct: 279 EVLKRMKRPANAEKTLDRIRAWREVCPELTIRSTFIAGFPGETEEEFQTLLDFIAEAELD 338

Query: 361 QAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
           +   F YSP  G   +++   + + V+ ER     +             VG+ + VL+++
Sbjct: 339 RVGCFAYSPVEGATANDLPGALPDEVREERRARFMEVAERVSARRLQRKVGKTLRVLVDE 398

Query: 421 HGKEK--GKLVGRSPWLQSVVLNSKNHNI------GDIIKVRITDVKISTLYGEL 467
             ++   G+    +P +  +V  +           GD + V+IT      L+GE+
Sbjct: 399 VNQDGGIGRSSADAPEIDGLVYIAPPSKPYKRYKTGDFVSVKITGADGHDLWGEV 453


>gi|146302669|ref|YP_001197260.1| MiaB-like tRNA modifying enzyme YliG [Flavobacterium johnsoniae
           UW101]
 gi|238065357|sp|A5FA30|RIMO_FLAJ1 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|146157087|gb|ABQ07941.1| MiaB-like tRNA modifying enzyme YliG [Flavobacterium johnsoniae
           UW101]
          Length = 437

 Score =  363 bits (931), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 124/461 (26%), Positives = 223/461 (48%), Gaps = 35/461 (7%)

Query: 17  IVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSM---DDADLIVLNTCHIR 73
           +  + +   +  V + GC  NVYDS  +     + G E  +     D+ ++IV+NTC   
Sbjct: 1   MRTKSLKKNKINVITLGCSKNVYDSEVLMGQLRANGKEVTHEATAKDEGNIIVINTCGFI 60

Query: 74  EKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTY 133
           + A  +  + +    + K+     G    V V GC+++    ++ +  P V+   G    
Sbjct: 61  DNAKAESVNMILEYADKKDK----GLVDKVFVTGCLSERYRPDLEKEIPNVDQYFGT--- 113

Query: 134 YRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC 193
             LP+LL       + +  DY  E   ERL+     Y       A+L I EGCD+ C+FC
Sbjct: 114 TELPQLL-------KALGADYKHELLGERLTTTPKNY-------AYLKIAEGCDRPCSFC 159

Query: 194 VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS 253
            +P  RG  +S+ + ++V EA+ L  NGV E+ L+ Q++  + G  L  +K   ++LL +
Sbjct: 160 AIPLMRGSHVSQPIEKLVKEAQGLAKNGVKELILIAQDLT-YYGLDLY-KKRNLAELLEA 217

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
           L+ ++G+  +R   ++P      +++       +  Y+ +P+Q  SD ILKSM R  T  
Sbjct: 218 LAAVEGIEWIRLHYAYPTGFPMDVLELMKREPKICNYIDIPLQHISDSILKSMRRGTTQA 277

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
           +  Q++   R+  P +AI +  IVG+PGET +DF    + V ++ + +   F YS    T
Sbjct: 278 KTTQLLKDFRAAVPGMAIRTTLIVGYPGETQEDFEILKEFVQEMKFDRMGCFAYSHEENT 337

Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS- 432
               + + V ++VK  R   + +   +     N   VGQ+   +I++  KE    VGR+ 
Sbjct: 338 HAYLLEDDVPDDVKQARANEIMELQSQISWDLNQEKVGQVFRCIIDR--KEGAHFVGRTE 395

Query: 433 ---PWLQS-VVLNSKNHNI--GDIIKVRITDVKISTLYGEL 467
              P + + V++++  H +  G+ + ++I +     LYGE 
Sbjct: 396 FDSPDVDNEVLIDASKHYVKTGEFVNIKIIEATEFDLYGEP 436


>gi|281419891|ref|ZP_06250890.1| RNA modification enzyme, MiaB family [Prevotella copri DSM 18205]
 gi|281406018|gb|EFB36698.1| RNA modification enzyme, MiaB family [Prevotella copri DSM 18205]
          Length = 433

 Score =  363 bits (931), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 118/450 (26%), Positives = 203/450 (45%), Gaps = 35/450 (7%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEKVYSFLGR 86
           + + GC  N+ DS  +   F + GY  V+       ++ V+NTC   E A ++    +  
Sbjct: 8   IITLGCSKNLVDSELLMKQFEANGYHCVHDSKRPQGEIAVINTCGFIEDAKQESIDTILE 67

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
               K      G    + V GC++Q   +E+    P V+   G   Y +L + L +A   
Sbjct: 68  FIQAKEE----GRLRKLYVMGCLSQRYQKELEEEMPEVDKFYGKFNYKQLLQELGKA--- 120

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
                         E  S     +       A++ I EGC++ C +C +P   G  +SR 
Sbjct: 121 --------------EVSSCNGQRHLTTPRHYAYIKIAEGCNRHCAYCAIPIITGKHVSRP 166

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
             +++ E R+L+  GV E  ++ Q +  + G  +DG K   ++L+  +++I G+  +R  
Sbjct: 167 KEEILQEVRELVAEGVKEFQIIAQELT-YYGVDIDG-KHHITELISEMADIPGVKWIRLH 224

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
            ++P      L+    +   +  YL + +Q  SD +L SM+R  T  E   ++  IR   
Sbjct: 225 YAYPNQFPMDLLDVMREKPNVCKYLDIALQHISDHMLTSMHRHVTKQETINLLKAIRERV 284

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP-GSNMLEQVDEN 385
           P I I +  +VGFPGETD+DF   +D V +  + +  +F YS   GT   ++  + V   
Sbjct: 285 PGIHIRTTLMVGFPGETDEDFHELLDFVREQRFERMGAFAYSEEEGTYSATHYEDNVPAE 344

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVL- 440
           VK  RL  L    ++         VG+ + V+I++  KE    +GR+    P +   VL 
Sbjct: 345 VKQRRLDELMILQQDISSEIEADKVGKNMTVIIDR--KEGDYYIGRTEFCSPEVDPEVLI 402

Query: 441 --NSKNHNIGDIIKVRITDVKISTLYGELV 468
             + K   +G   +V IT  +   LYG++V
Sbjct: 403 RADEKRLRVGCFYQVEITASEEFDLYGKVV 432


>gi|71066091|ref|YP_264818.1| ribosomal protein S12 methylthiotransferase [Psychrobacter arcticus
           273-4]
 gi|123775584|sp|Q4FRH4|RIMO_PSYA2 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|71039076|gb|AAZ19384.1| conserved hypothetical protein [Psychrobacter arcticus 273-4]
          Length = 525

 Score =  363 bits (931), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 127/456 (27%), Positives = 203/456 (44%), Gaps = 33/456 (7%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC   + DS R+       GY+  +  D ADL+V+NTC   E A ++    +G
Sbjct: 83  KIGFVSLGCPKALVDSERIITELSRDGYQVASDYDGADLVVVNTCGFIESAVQESLDAIG 142

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
              +             V+V GC+   E ++I    P V  V G   Y    E++     
Sbjct: 143 EAISKNGK---------VIVTGCLG-KEADKIREMHPAVLAVTGAHAYD---EVIRAVAL 189

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                D         +   I + G        A+L I EGC+  CTFC++P  RG  +SR
Sbjct: 190 HVPKPDRSLDASYDPKIDLINEAGIKLTPSHYAYLKISEGCNHRCTFCIIPSLRGDLVSR 249

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE---------KCTFSDLLYSLSE 256
            +  V++EA  L   GV E+ ++ Q+ +A  G  L  +         K  F DL  +L++
Sbjct: 250 PIDSVMNEALALKKAGVKELLIISQDTSA-YGLDLKYKTSFWNGMPLKSKFYDLCQALND 308

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           +   VRL Y   +P      +++  G+   L+PYL +P Q  S RILK+M R   +    
Sbjct: 309 LGIWVRLHYVYPYPHVDK--VVELMGE-KKLLPYLDIPFQHASHRILKAMKRPAHSENTL 365

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
             I   R + PDI I S F+VGFPGET++DF+  +D + +    +  +F YS   G   +
Sbjct: 366 ARIHAWREICPDIVIRSTFVVGFPGETEEDFQCLLDWLVEARLDRVGAFTYSEVEGAVAN 425

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS---- 432
           ++   V E+VK ER   L    ++         +G+ + VL+++  +E+G  + RS    
Sbjct: 426 DLPNHVPEDVKQERYERLMTLQQDISAQKLQEKIGKTLMVLVDEIDREEGVAICRSYADA 485

Query: 433 PWLQSVVLNSK---NHNIGDIIKVRITDVKISTLYG 465
           P +   V       +  +G  + V I D     L+ 
Sbjct: 486 PEIDGHVYVDDIDAHVKVGQFLTVTIDDASEYDLFA 521


>gi|33599243|ref|NP_886803.1| hypothetical protein BB0254 [Bordetella bronchiseptica RB50]
 gi|81432407|sp|Q7WQS2|RIMO_BORBR RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|33575289|emb|CAE30752.1| conserved hypothetical protein [Bordetella bronchiseptica RB50]
          Length = 439

 Score =  363 bits (931), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 126/460 (27%), Positives = 208/460 (45%), Gaps = 33/460 (7%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           +   +    S G    + DS R+     ++GYE     +DAD++V+NTC   + A  +  
Sbjct: 1   MSSPKVGFVSLGRPKALVDSERILTQLRTEGYEVTPEYNDADVVVVNTCGFIDSAKAESL 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             +G              +  V+V GC+   E   I +  P V  V GPQ Y  +   + 
Sbjct: 61  EAIGEA---------IAENGKVIVTGCMGVEE-SVIRQVHPSVLAVTGPQQYEEVVRAVH 110

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
                ++  +    +        +   G        A+L I EGC+  C+FC++P  RG 
Sbjct: 111 GVAPPRQDHNPYLDL--------VPPQGVKLTPRHYAYLKISEGCNHRCSFCIIPSMRGD 162

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYS 253
            +SR +  V+ EA +L+  GV E+ ++ Q+ +A+      R    +G   K   ++L  +
Sbjct: 163 LVSRPVGDVLSEAERLVRAGVKELLVISQDTSAYGVDIKYRSGFWNGRPVKTRMTELCAA 222

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
           LSE+    RL Y   +P      +I    D   ++PYL +P Q  S RIL++M R     
Sbjct: 223 LSELGVWTRLHYVYPYPHVD--EVIGLMAD-GKVLPYLDIPFQHASPRILRAMKRPAFED 279

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
           +    I R R   PD+ + S FIVGFPGET++DF+  +D + +    +   F+YSP  G 
Sbjct: 280 KTLARIKRWREECPDLTLRSTFIVGFPGETEEDFQYLLDWMSEAQLDRVGCFQYSPVEGA 339

Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGR 431
           P + +   V + VK ER     +  +    +     VG+ I+VLI+   +E   G+    
Sbjct: 340 PANTLDNPVPDEVKQERWERFMEHQQAISTARLSTRVGREIDVLIDSVDEEGAVGRSSAD 399

Query: 432 SPWLQSVVLNSKN--HNIGDIIKVRITDVKISTLYGELVV 469
           +P +   V          GD+++VR+TD     L+GE + 
Sbjct: 400 APEIDGCVYVDSEQPLKAGDMVRVRVTDSDEYDLWGERIA 439


>gi|237709946|ref|ZP_04540427.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|237725388|ref|ZP_04555869.1| conserved hypothetical protein [Bacteroides sp. D4]
 gi|265753598|ref|ZP_06088953.1| MiaB-like tRNA modifying enzyme YliG [Bacteroides sp. 3_1_33FAA]
 gi|229436075|gb|EEO46152.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4]
 gi|229456039|gb|EEO61760.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|263235312|gb|EEZ20836.1| MiaB-like tRNA modifying enzyme YliG [Bacteroides sp. 3_1_33FAA]
          Length = 432

 Score =  362 bits (930), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 109/453 (24%), Positives = 203/453 (44%), Gaps = 35/453 (7%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDA--DLIVLNTCHIREKAAEKVYSF 83
              + + GC  N+ DS ++     + GY+  +  D    ++ V+NTC     A E+  + 
Sbjct: 5   TIDIITLGCSKNLVDSEKLMRQLEANGYKVTHDSDKPQGEIAVINTCGFIGDAKEESINM 64

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +      K      G    + V GC+++   +E+    P V+   G   +  L   L +A
Sbjct: 65  ILEFCQAKEE----GKLKKLYVMGCLSERYLKELALEIPQVDKFYGKFNWNELLADLGKA 120

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
                     Y  E   ER       Y       A+L I EGCD+ C++C +P   G  I
Sbjct: 121 ----------YKAEFTIERTLTTPHHY-------AYLKISEGCDRKCSYCAIPIITGRHI 163

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR + +++DE + L+  GV E  ++ Q +  + G  L  +     +L+  ++ + G+  +
Sbjct: 164 SRPMEEIIDEVKLLVSEGVKEFQIIAQELT-YYGVDLY-KSQKLPELIERIANVPGVEWI 221

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R   ++P    + L +   + D +  Y+ + +Q  SD +L  M R  +  E  ++I++ R
Sbjct: 222 RLHYAYPAHFPEELFRVMREHDNVCKYMDIALQHISDNMLNKMRRHVSKAETYELIEKFR 281

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN-MLEQV 382
              P I + +  +VG PGE ++DF    + V K+ + +  +F YS   GT  +    + +
Sbjct: 282 REVPGIHLRTTLMVGHPGEAEEDFEELKEFVKKVRFDRMGAFAYSEEEGTFAAKEYEDSI 341

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQS- 437
              VK +RL  L    +E     +   +G+  +V+I++  KE    +GR+    P +   
Sbjct: 342 SHEVKQQRLDELMALQQEIAGELSQTKIGKEFKVIIDR--KEGDYYIGRTQFDSPEVDPE 399

Query: 438 VVLNSKNH--NIGDIIKVRITDVKISTLYGELV 468
           V++ + +    IG+  KV+IT      LY  ++
Sbjct: 400 VLIKADDEYLKIGEFYKVKITAADDFDLYASIL 432


>gi|83720372|ref|YP_442780.1| ribosomal protein S12 methylthiotransferase [Burkholderia
           thailandensis E264]
 gi|257138990|ref|ZP_05587252.1| putative tRNA modifying protein [Burkholderia thailandensis E264]
 gi|123753779|sp|Q2SWB9|RIMO_BURTA RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|83654197|gb|ABC38260.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Burkholderia
           thailandensis E264]
          Length = 463

 Score =  362 bits (930), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 126/479 (26%), Positives = 212/479 (44%), Gaps = 48/479 (10%)

Query: 16  QIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREK 75
           +   +     +  + S GC   + DS ++     ++GYE   + D ADL+V+NTC   ++
Sbjct: 6   KSSGKPPAAPKVGMVSLGCPKALVDSEQIITQLRAEGYEISGTYDGADLVVVNTCGFIDE 65

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEE----ILRRSPIVNVVVGPQ 131
           A ++    +G                 V+V GC+   +       I    P V  V GP 
Sbjct: 66  AVQESLDAIGEALAENGK---------VIVTGCLGAKKSASGSGLIEEVHPKVLAVTGPH 116

Query: 132 TYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCT 191
               + +++                 D F  L    G     R   A+L I EGC+  C+
Sbjct: 117 AVGEVMQVVHSHLP---------KPHDPFVDLVPAAGIKLTPRHY-AYLKISEGCNHRCS 166

Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE-- 243
           FC++P  RG  +SR +++V+ EA  L   GV E+ ++ Q+ +A+      R    +G   
Sbjct: 167 FCIIPSMRGDLVSRPVAEVMLEAENLFKAGVKELLVISQDTSAYGVDVKYRTGFWNGRPL 226

Query: 244 KCTFSDLLYSLSEI----KGLVRLRYTTSHPRDMSDCLIKAHGDLD-VLMPYLHLPVQSG 298
           K   ++L+ +L E+       VRL Y   +P       + A G L   ++PYL +P Q  
Sbjct: 227 KTRMTELVGALGELAAQYGAWVRLHYVYPYPHVDEIIPMMAQGPLKGHVLPYLDVPFQHA 286

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
              +LK M R   A +  + + R R + PD+ I S FI GFPGET+  F   +D + +  
Sbjct: 287 HPDVLKRMKRPANAEKVLERVQRWREICPDLTIRSTFIAGFPGETEAQFETLLDFIREAE 346

Query: 359 YAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI 418
             +   F YSP  G   + +   + ++V+  R     +   E   +  +  VG+ ++VLI
Sbjct: 347 LDRVGCFAYSPVEGASANELDGALPDDVREARRARFMEVAEEVSAARIERKVGKTLKVLI 406

Query: 419 EKHGKEKGKLVGRS----PWLQSVVLN------SKNHNIGDIIKVRITDVKISTLYGEL 467
           ++  +E G  +GR+    P +  VV        SK + +GD + V+IT      L+GE+
Sbjct: 407 DEVNEEGG--IGRTAADAPEIDGVVYVEPAAKASKRYKVGDFVSVKITGADGHDLWGEV 463


>gi|307246560|ref|ZP_07528632.1| Ribosomal protein S12 methylthiotransferase rimO [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|307255545|ref|ZP_07537351.1| Ribosomal protein S12 methylthiotransferase rimO [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|307259996|ref|ZP_07541709.1| Ribosomal protein S12 methylthiotransferase rimO [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|306852623|gb|EFM84856.1| Ribosomal protein S12 methylthiotransferase rimO [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|306861587|gb|EFM93575.1| Ribosomal protein S12 methylthiotransferase rimO [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|306866024|gb|EFM97899.1| Ribosomal protein S12 methylthiotransferase rimO [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
          Length = 443

 Score =  362 bits (930), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 127/463 (27%), Positives = 211/463 (45%), Gaps = 41/463 (8%)

Query: 21  CIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKV 80
              P   F+ S GC  N+ DS R+     + GY  + S ++ADL+++NTC   + A ++ 
Sbjct: 2   STTPNIGFI-SLGCPKNLVDSERILTELRTDGYNIIPSYENADLVIVNTCGFIDSAVQES 60

Query: 81  YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140
              +G                 V+V GC+  A+  +I    P V  + GP +Y  + + +
Sbjct: 61  LEAIGEALEENGK---------VIVTGCLG-AKENQIREVHPKVLEITGPHSYEAVMKHV 110

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
            +              E       +   G        A+L I EGCD  CTFC++P  RG
Sbjct: 111 HKY---------VPRPERNIYTSLVPAQGVKLTPKHYAYLKISEGCDHRCTFCIIPSMRG 161

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNV----------NAWRGKGLDG--EKCTFS 248
              SR + QV+DEA++L D+GV E+ ++ Q+           N  +    +G   K    
Sbjct: 162 DLDSRPIVQVLDEAKRLADSGVKELLIVSQDTSAYALDQSKENQNKTVFWNGVPIKNNLI 221

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
            L   L  +   VRL Y   +P       + A G    ++PYL +P+Q  S ++LK+M R
Sbjct: 222 TLCEQLGTLGIWVRLHYVYPYPHVDDLIPLMAQG---KILPYLDIPLQHASPKVLKAMKR 278

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
                   + I + R + P++ + S FIVGFPGET++DF+  +D +++    +   FK+S
Sbjct: 279 PGAIDRTLERIKKWREICPELTLRSTFIVGFPGETEEDFQMLLDFLEEAQLDRVGCFKFS 338

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--G 426
           P  G   + M +QV E+VK ER     +  +    +     VG+ + V+I++  +E   G
Sbjct: 339 PVEGAVATEMADQVPEDVKGERFHRFMQVQQRISAARLQQKVGKTLAVIIDEIDEEGIIG 398

Query: 427 KLVGRSPWLQSVVLNSK----NHNIGDIIKVRITDVKISTLYG 465
           + +  +P +  VV           +G +I V IT+     L+G
Sbjct: 399 RSMADAPEIDGVVYVDNLSEQEVKVGQVISVSITNADEYDLWG 441


>gi|167581733|ref|ZP_02374607.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Burkholderia
           thailandensis TXDOH]
          Length = 463

 Score =  362 bits (930), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 127/479 (26%), Positives = 214/479 (44%), Gaps = 48/479 (10%)

Query: 16  QIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREK 75
           +   +  V  +  + S GC   + DS ++     ++GYE   + D ADL+V+NTC   ++
Sbjct: 6   KSSGKPPVAPKVGMVSLGCPKALVDSEQIITQLRAEGYEISGTYDGADLVVVNTCGFIDE 65

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEE----ILRRSPIVNVVVGPQ 131
           A ++    +G                 V+V GC+   +       I    P V  V GP 
Sbjct: 66  AVQESLDAIGEALAENGK---------VIVTGCLGAKKSASGSGLIEEVHPKVLAVTGPH 116

Query: 132 TYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCT 191
               + +++                 D F  L    G     R   A+L I EGC+  C+
Sbjct: 117 AVGEVMQVVHSHLP---------KPHDPFVDLVPAAGIKLTPRHY-AYLKISEGCNHRCS 166

Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE-- 243
           FC++P  RG  +SR +++V+ EA  L   GV E+ ++ Q+ +A+      R    +G   
Sbjct: 167 FCIIPSMRGDLVSRPVAEVMLEAENLFKAGVKELLVISQDTSAYGVDVKYRTGFWNGRPL 226

Query: 244 KCTFSDLLYSLSEI----KGLVRLRYTTSHPRDMSDCLIKAHGDL-DVLMPYLHLPVQSG 298
           K   ++L+ +L E+       VRL Y   +P       + A G L D ++PYL +P Q  
Sbjct: 227 KTRMTELVGALGELAAQYGAWVRLHYVYPYPHVDEIIPMMAQGPLKDHVLPYLDVPFQHA 286

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
              +LK M R   A +  + + + R + PD+ I S FI GFPGET+  F   +D + +  
Sbjct: 287 HPDVLKRMKRPANAEKVLERVQKWREICPDLTIRSTFIAGFPGETEAQFETLLDFIREAE 346

Query: 359 YAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI 418
             +   F YSP  G   + +   + ++V+  R     +   E   +  +  VG+ ++VLI
Sbjct: 347 LDRVGCFAYSPVEGASANELDGALPDDVREARRARFMEVAEEVSAARIERKVGKTLKVLI 406

Query: 419 EKHGKEKGKLVGRS----PWLQSVVLN------SKNHNIGDIIKVRITDVKISTLYGEL 467
           ++  +E G  +GR+    P +  VV        SK + +GD + V+IT      L+GE+
Sbjct: 407 DEVNEEGG--IGRTAADAPEIDGVVYVEPAAKASKRYKVGDFVSVKITGADGHDLWGEV 463


>gi|269303129|gb|ACZ33229.1| RNA modification enzyme, MiaB family [Chlamydophila pneumoniae
           LPCoLN]
          Length = 468

 Score =  362 bits (930), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 121/459 (26%), Positives = 215/459 (46%), Gaps = 23/459 (5%)

Query: 19  DQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAE 78
           +  I   +    S GC  N+ DS  M  +    GYE  N ++DAD ++LNTC   + A +
Sbjct: 10  NSVISKNKIHFISLGCSRNLVDSEVMLGILLKAGYESTNEIEDADYLILNTCAFLKSARD 69

Query: 79  KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPE 138
           +   +L  + ++K    K      ++V GC+     +E+      ++ ++G      +  
Sbjct: 70  EAKDYLDHLIDVKKENAK------IIVTGCMTSNHKDELKPWMSHIHYLLGSGDVENILS 123

Query: 139 LLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
            +E    G+++    Y    +  R       Y       A+L + EGC K C FC++P  
Sbjct: 124 AIESRESGEKISAKSYIEMGEVPRQLSTPKHY-------AYLKVAEGCRKRCAFCIIPSI 176

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT-FSDLLYSLSEI 257
           +G   S+ L Q++ E R L++NGV EI L+ Q++    GK L  ++ +    LL+ L + 
Sbjct: 177 KGKLRSKPLDQILKEFRILVNNGVKEIILIAQDLG-DYGKDLSTDRSSQLESLLHELLKE 235

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
            G   LR    +P ++SD +I        L+PY+ +P+Q  ++RILK M R  +  +   
Sbjct: 236 PGDYWLRMLYLYPDEVSDGIIDLMRSNPKLLPYVDIPLQHINNRILKQMRRTTSREQILG 295

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
            ++++R+  P + I S  IVGFPGET ++F+   D + +        F YS    TP + 
Sbjct: 296 FLEKLRAKVPQVYIRSSVIVGFPGETQEEFQELADFIGEGWIDNLGIFLYSQEANTPAAE 355

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-----KLVGRS 432
           + +Q+ E VK  RL  L +  +      N   +G+ IE +I+ +  E       +  G++
Sbjct: 356 LPDQIPEKVKESRLKILSQIQKRNVDKHNQKLIGEKIEAVIDNYHPETNLLLTARFYGQA 415

Query: 433 PWLQSVVLNSKNHNI---GDIIKVRITDVKISTLYGELV 468
           P +   ++ ++   +   G+   + IT      L G +V
Sbjct: 416 PEVDPCIIVNEAKLVSHFGERCFIEITGAAGYDLVGRVV 454


>gi|170692354|ref|ZP_02883517.1| MiaB-like tRNA modifying enzyme YliG [Burkholderia graminis C4D1M]
 gi|170142784|gb|EDT10949.1| MiaB-like tRNA modifying enzyme YliG [Burkholderia graminis C4D1M]
          Length = 463

 Score =  362 bits (930), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 122/469 (26%), Positives = 208/469 (44%), Gaps = 48/469 (10%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC   + DS ++     ++GYE   + D ADL+V+NTC   ++A ++    +G
Sbjct: 16  KVGFVSLGCPKALVDSEQIITQLRAEGYEISGTYDGADLVVVNTCGFIDEAVQESLDAIG 75

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEE----ILRRSPIVNVVVGPQTYYRLPELLE 141
                         +  V+V GC+   +       I    P V  V GP     + + + 
Sbjct: 76  EA---------LNENGKVIVTGCLGAKKSASGSGLIEEVHPKVLAVTGPHAVGEVMQHVH 126

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
                           D F  L +   G        A+L I EGC+  CTFC++P  RG 
Sbjct: 127 MHLP---------KPHDPFVDL-VPPAGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGD 176

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYS 253
            +SR +++V+ EA  L  +GV E+ ++ Q+ +A+      R    +G+  K   +DL+ +
Sbjct: 177 LVSRPVAEVMLEAENLFKSGVKELLVISQDTSAYGVDVKYRTGFWNGKPIKTRMTDLVGA 236

Query: 254 LSEI----KGLVRLRYTTSHPRDMSDCLIKAHGDLD-VLMPYLHLPVQSGSDRILKSMNR 308
           L E+       VRL Y   +P       + A G     ++PYL +P Q     +LK M R
Sbjct: 237 LGELAAQYGAWVRLHYVYPYPSVDEVIPMMATGPYKGHVLPYLDVPFQHAHPEVLKRMKR 296

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
              A +  + +   R + PD+ I S FI GFPGET++ F+  +D + +    +   F YS
Sbjct: 297 PANAEKVMERVKAWREMCPDLTIRSTFIAGFPGETEEQFQTLLDFIREAELDRVGCFAYS 356

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL 428
           P  G   + +   + + V+ ER     +   +         VG+ ++VL+++   + G  
Sbjct: 357 PVEGATANELDGALPDEVREERRARFMEVAEQVSAKRIAKKVGKTLKVLVDEINADGG-- 414

Query: 429 VGRS----PWLQSVVLNS------KNHNIGDIIKVRITDVKISTLYGEL 467
           +GR+    P +  VV  +      K + +GD + V+IT      L+GE+
Sbjct: 415 IGRTAADAPEIDGVVYIAPAAKASKRYKVGDFVSVKITGADGHDLWGEV 463


>gi|332300307|ref|YP_004442228.1| Ribosomal protein S12 methylthiotransferase rimO [Porphyromonas
           asaccharolytica DSM 20707]
 gi|332177370|gb|AEE13060.1| Ribosomal protein S12 methylthiotransferase rimO [Porphyromonas
           asaccharolytica DSM 20707]
          Length = 443

 Score =  362 bits (930), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 116/453 (25%), Positives = 202/453 (44%), Gaps = 28/453 (6%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDD--ADLIVLNTCHIREKAAEK 79
           ++  +  V S GC  N+ DS  +       GY   +  ++   ++ V+NTC   + A E+
Sbjct: 1   MIANQIDVISLGCSKNLVDSDALMRRLAQYGYTLRHDPEELTGEIAVVNTCGFIQAAQEE 60

Query: 80  VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL 139
             + +  +   K    KEG    + V GC+ +   EE+    P V+ + G   + +L   
Sbjct: 61  SINLILSLIEAK----KEGRIRAIYVMGCLGERFREELTAELPEVDKIYGKYDWKQLITD 116

Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           L  A              D    LS      +      +++ I EGCD+ C++C +P   
Sbjct: 117 LGPALSA-----------DDATPLSYRTPPPSVTPQHYSYIKISEGCDRTCSYCAIPLIT 165

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G   SR + ++V E  K +  G  E  ++ Q+   + G  L  E+   + LL  L++++G
Sbjct: 166 GRHHSRPMEEIVREIEKRVATGCREFQIIAQDST-YYGVDLYQEQA-IATLLDRLAQVEG 223

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           +  LR   ++P      L+      D +  YL L +Q  S+ +L+ M R+ T  E   ++
Sbjct: 224 VHWLRLHYAYPNHFPIELLDVMAKHDNICKYLDLALQHSSNHMLQLMRRQITREETIALL 283

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
           +RIR   P IA+ +  +VG PGETD+DF   +D V ++ + +  +F+YS   GT      
Sbjct: 284 ERIRKQVPGIALRTTMMVGHPGETDEDFADLLDFVSQMRFERLGAFQYSHEEGTYAYKHY 343

Query: 380 -EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PW 434
            + V   VK ER   L         S N   VG  +EV++++  +E+   VGR+    P 
Sbjct: 344 QDDVPPEVKQERYDALMSIQETISTSINSRKVGTTLEVVVDR--EEEDYYVGRTQYDSPE 401

Query: 435 LQSVVL--NSKNHNIGDIIKVRITDVKISTLYG 465
           +   V+  +     +G   +  IT ++   L  
Sbjct: 402 VDGEVILSSDSPLRVGSFYQAEITGIEEYDLIA 434


>gi|46199117|ref|YP_004784.1| Fe-S oxidoreductase [Thermus thermophilus HB27]
 gi|81405881|sp|Q72JG1|RIMO_THET2 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|46196741|gb|AAS81157.1| Fe-S oxidoreductase [Thermus thermophilus HB27]
          Length = 434

 Score =  362 bits (930), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 130/454 (28%), Positives = 213/454 (46%), Gaps = 39/454 (8%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC   + DS ++     + GYE   S ++A+L+++NTC    +A E+    +G
Sbjct: 3   KIGFVSLGCPKALVDSEQILSRLKALGYETSPSYEEAELVIVNTCGFINEAVEESLEAIG 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
               LK +         VVV GC+     E+I  R P V  V GP    R+ E ++    
Sbjct: 63  EA--LKENGK-------VVVTGCLGAR-PEKIRERHPQVLAVTGPGEVERVLEAVQEVLP 112

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
             R              L ++           A++ + EGCD  C+FC++P  RG   SR
Sbjct: 113 APR-----------DPFLDLIPPQVKLTPRHYAYVKLSEGCDHRCSFCIIPKLRGRLRSR 161

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAW-----RGKGLDGEKC---TFSDLLYSLSEI 257
             + V+ EA +L+  G  E+ L+ Q+++A+       + L G++       DLL  ++E+
Sbjct: 162 DAADVLAEAARLVATGTKELLLVAQDLSAYGVDLGHRESLWGDRPVRAELKDLLTHMAEL 221

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
              +RL Y   +P      L+    +   ++PYL +P+Q  S RIL+ M R      + +
Sbjct: 222 GVWIRLHYVYPYPHV--KDLLPLMAE-GKVLPYLDVPLQHASPRILRLMRRPGGYESHLK 278

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
            +   R V P++A+ S FIVGFPGET++DF+  +D +++    +   F YSP  G   + 
Sbjct: 279 TLKAWREVVPELALRSTFIVGFPGETEEDFQILLDFLEEAELDRVGVFAYSPVEGAEANR 338

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----P 433
           + + V E VK ER   L +      +  N   VG+ +EVL+++   E G  VGR+    P
Sbjct: 339 LPDPVPEEVKEERKARLLEVQARVSLRKNQRFVGKTLEVLVDEL-PEPGLAVGRTYRDAP 397

Query: 434 WLQSVVLNSKN--HNIGDIIKVRITDVKISTLYG 465
            +  VV    +    +G+ I VRI       L+G
Sbjct: 398 GVDGVVYVETDGTVRVGERIPVRILRADTYDLHG 431


>gi|167619848|ref|ZP_02388479.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Burkholderia
           thailandensis Bt4]
          Length = 463

 Score =  362 bits (930), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 127/479 (26%), Positives = 213/479 (44%), Gaps = 48/479 (10%)

Query: 16  QIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREK 75
           +   +  V  +  + S GC   + DS ++     ++GYE   + D ADL+V+NTC   ++
Sbjct: 6   KSSGKPPVAPKVGMVSLGCPKALVDSEQIITQLRAEGYEISGTYDGADLVVVNTCGFIDE 65

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEE----ILRRSPIVNVVVGPQ 131
           A ++    +G                 V+V GC+   +       I    P V  V GP 
Sbjct: 66  AVQESLDAIGEALAENGK---------VIVTGCLGAKKSASGSGLIEEVHPKVLAVTGPH 116

Query: 132 TYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCT 191
               + +++                 D F  L    G     R   A+L I EGC+  C+
Sbjct: 117 AVGEVMQVVHSHLP---------KPHDPFVDLVPAAGIKLTPRHY-AYLKISEGCNHRCS 166

Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE-- 243
           FC++P  RG  +SR +++V+ EA  L   GV E+ ++ Q+ +A+      R    +G   
Sbjct: 167 FCIIPSMRGDLVSRPVAEVMLEAENLFKAGVKELLVISQDTSAYGVDVKYRTGFWNGRPL 226

Query: 244 KCTFSDLLYSLSEI----KGLVRLRYTTSHPRDMSDCLIKAHGDLD-VLMPYLHLPVQSG 298
           K   ++L+ +L E+       VRL Y   +P       + A G L   ++PYL +P Q  
Sbjct: 227 KTRMTELVGALGELAAQYGAWVRLHYVYPYPHVDEIIPMMAQGPLKGHVLPYLDVPFQHA 286

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
              +LK M R   A +  + + R R + PD+ I S FI GFPGET+  F   +D + +  
Sbjct: 287 HPDVLKRMKRPANAEKVLERVQRWREICPDLTIRSTFIAGFPGETEAQFETLLDFIREAE 346

Query: 359 YAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI 418
             +   F YSP  G   + +   + ++V+  R     +   E   +  +  VG+ ++VLI
Sbjct: 347 LDRVGCFAYSPVEGASANELDGALPDDVREARRARFMEVAEEVSAARIERKVGKTLKVLI 406

Query: 419 EKHGKEKGKLVGRS----PWLQSVVLN------SKNHNIGDIIKVRITDVKISTLYGEL 467
           ++  +E G  +GR+    P +  VV        SK + +GD + V+IT      L+GE+
Sbjct: 407 DEVNEEGG--IGRTAADAPEIDGVVYVEPAAKASKRYKVGDFVSVKITGADGHDLWGEV 463


>gi|89895872|ref|YP_519359.1| hypothetical protein DSY3126 [Desulfitobacterium hafniense Y51]
 gi|89335320|dbj|BAE84915.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 441

 Score =  362 bits (930), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 146/435 (33%), Positives = 236/435 (54%), Gaps = 20/435 (4%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P      + GC++N  +S  +  +F + GY  V+S + AD++V+NTC +      K    
Sbjct: 11  PASVCFVTLGCKVNQTESEALGQLFRNNGYHVVSSTEKADVVVVNTCTVTNTGGAKSRQT 70

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           + R+       +K   D  VVV GC AQ    EIL  +  V++V+G Q   ++ EL+++ 
Sbjct: 71  IRRM-------VKAHPDAFVVVMGCYAQTAPGEILGIA-GVDLVLGTQDRGKILELIDQV 122

Query: 144 RFGKRVVDTDYSVED--KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           +  ++   +  ++ D   FE L +++     +    A L IQEGC++FCT+C++PY RG 
Sbjct: 123 KKEQQPKSSVRTIWDAKTFEELPLIEE----ESRTRATLKIQEGCNQFCTYCIIPYARGP 178

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
             SR     V EA KL+  G  EI L G +  +  G+ L GE    + L+ +L++IKGL 
Sbjct: 179 VRSRIPENAVTEAEKLVAAGYKEIVLTGIHTGS-YGEDL-GEDWDLARLVKALAQIKGLH 236

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           RLR ++  P + +  LI    +   + P+LH+P+Q GSD IL  M R +T  E++++I R
Sbjct: 237 RLRLSSIEPMEFTPELIDVIINYPAVCPHLHIPLQCGSDAILTRMKRPYTVKEFKELIQR 296

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           + S++P IAI++D IVGFPGET+ +F+ T++ V   G++    F YS R GTP +   EQ
Sbjct: 297 LTSLQPGIAITTDVIVGFPGETEQNFQETLETVRSCGFSGIHVFPYSKREGTPAAKYPEQ 356

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           +   +K ER+  L +  RE Q  +    +GQ +EVLIE+   E G   G +     V L 
Sbjct: 357 IPNKIKEERVKALLEVARESQEDYVRRFIGQRVEVLIERVSPE-GVAAGHTGNYIQVHLP 415

Query: 442 SKNHNI---GDIIKV 453
            +       G++++ 
Sbjct: 416 PREGKPWEGGELVEC 430


>gi|219670301|ref|YP_002460736.1| RNA modification enzyme, MiaB family [Desulfitobacterium hafniense
           DCB-2]
 gi|219540561|gb|ACL22300.1| RNA modification enzyme, MiaB family [Desulfitobacterium hafniense
           DCB-2]
          Length = 439

 Score =  362 bits (930), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 146/435 (33%), Positives = 236/435 (54%), Gaps = 20/435 (4%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P      + GC++N  +S  +  +F + GY  V+S + AD++V+NTC +      K    
Sbjct: 9   PASVCFVTLGCKVNQTESEALGQLFRNNGYHVVSSTEKADVVVVNTCTVTNTGGAKSRQT 68

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           + R+       +K   D  VVV GC AQ    EIL  +  V++V+G Q   ++ EL+++ 
Sbjct: 69  IRRM-------VKAHPDAFVVVMGCYAQTAPGEILGIA-GVDLVLGTQDRGKILELIDQV 120

Query: 144 RFGKRVVDTDYSVED--KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           +  ++   +  ++ D   FE L +++     +    A L IQEGC++FCT+C++PY RG 
Sbjct: 121 KKEQQPKSSVRTIWDAKTFEELPLIEE----ESRTRATLKIQEGCNQFCTYCIIPYARGP 176

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
             SR     V EA KL+  G  EI L G +  +  G+ L GE    + L+ +L++IKGL 
Sbjct: 177 VRSRIPENAVTEAEKLVAAGYKEIVLTGIHTGS-YGEDL-GEDWDLARLVKALAQIKGLH 234

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           RLR ++  P + +  LI    +   + P+LH+P+Q GSD IL  M R +T  E++++I R
Sbjct: 235 RLRLSSIEPMEFTPELIDVIINYPAVCPHLHIPLQCGSDAILTRMKRPYTVKEFKELIQR 294

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           + S++P IAI++D IVGFPGET+ +F+ T++ V   G++    F YS R GTP +   EQ
Sbjct: 295 LTSLQPGIAITTDVIVGFPGETEQNFQETLETVRSCGFSGIHVFPYSKREGTPAAKYPEQ 354

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           +   +K ER+  L +  RE Q  +    +GQ +EVLIE+   E G   G +     V L 
Sbjct: 355 IPNKIKEERVKALLEVARESQEDYVRRFIGQRVEVLIERVSPE-GVAAGHTGNYIQVHLP 413

Query: 442 SKNHNI---GDIIKV 453
            +       G++++ 
Sbjct: 414 PREGKPWEGGELVEC 428


>gi|53713716|ref|YP_099708.1| putative Fe-S oxidoreductase [Bacteroides fragilis YCH46]
 gi|60681987|ref|YP_212131.1| putative oxidoreductase [Bacteroides fragilis NCTC 9343]
 gi|81314949|sp|Q5LCF8|RIMO_BACFN RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|81382384|sp|Q64TK5|RIMO_BACFR RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|52216581|dbj|BAD49174.1| putative Fe-S oxidoreductase [Bacteroides fragilis YCH46]
 gi|60493421|emb|CAH08207.1| putative oxidoreductase [Bacteroides fragilis NCTC 9343]
          Length = 432

 Score =  362 bits (930), Expect = 7e-98,   Method: Composition-based stats.
 Identities = 116/454 (25%), Positives = 209/454 (46%), Gaps = 35/454 (7%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDA--DLIVLNTCHIREKAAEKVYS 82
           +   + + GC  N+ DS ++       GY+  +  +    ++ V+NTC     A E+  +
Sbjct: 4   KTIDIITLGCSKNLVDSEQLMRQLEEAGYDVTHDSEKPTGEIAVINTCGFIGDAKEESIN 63

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +      K      G    + V GC+++   +E+    P V+   G   +  L + L +
Sbjct: 64  MILEFAQEKEE----GNLEKLFVMGCLSERYLKELAIEIPQVDKFYGKFNWKGLLQDLGK 119

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           A          Y  E   ER       Y       A+L I EGCD+ C++C +P   G  
Sbjct: 120 A----------YHEELHIERTLTTPKHY-------AYLKISEGCDRKCSYCAIPIITGRH 162

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR + +++DE R L+ NGV E  ++ Q +  + G  L  +K    +L+  +SEI G+  
Sbjct: 163 VSRPIEEILDEVRYLVSNGVKEFQVIAQELT-YYGVDLY-KKQMLPELIERISEIPGVEW 220

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R   ++P    + L +   + D +  Y+ + +Q  SD +L+ M R  T  E  ++I++ 
Sbjct: 221 IRLHYAYPAHFPEELFRVMRERDNVCKYMDIALQHISDNMLQRMRRHVTKKETYRLIEQF 280

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT-PGSNMLEQ 381
           R   P I + +  +VG PGET+ DF    + V K+ + +  +F YS   GT   +N  + 
Sbjct: 281 RKEVPGIHLRTTLMVGHPGETEGDFEELKEFVRKVRFDRMGAFTYSEEEGTYAAANYEDS 340

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQS 437
           + + +K  RL  L    +      + + VGQ ++V+I++   E    +GR+    P +  
Sbjct: 341 IPQELKQARLDELMAIQQGISTELSASKVGQKMKVIIDRI--EGEYYIGRTEFDSPEVDP 398

Query: 438 VVL---NSKNHNIGDIIKVRITDVKISTLYGELV 468
            VL      N  IG+  +V++ D     L+GE++
Sbjct: 399 EVLIRCEGDNLMIGNFYQVQVIDSDEFDLFGEII 432


>gi|294673495|ref|YP_003574111.1| 30S ribosomal protein S12 methylthiotransferase RimO [Prevotella
           ruminicola 23]
 gi|294473743|gb|ADE83132.1| ribosomal protein S12 methylthiotransferase RimO [Prevotella
           ruminicola 23]
          Length = 437

 Score =  362 bits (929), Expect = 7e-98,   Method: Composition-based stats.
 Identities = 114/457 (24%), Positives = 207/457 (45%), Gaps = 35/457 (7%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDA--DLIVLNTCHIREKAAEKV 80
           + +   + S GC  N+ DS  +  +  + GY+  +  DD   +++V+NTC     A E+ 
Sbjct: 1   MSKTIDIISLGCSKNLVDSETLMGLMEANGYQCTHDSDDPQGEIVVVNTCGFINDAKEES 60

Query: 81  YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140
            + +      K      G    + V GC+++    ++ +  P V+   G   Y +    L
Sbjct: 61  INTILEFAQAKTE----GRIEKLFVMGCLSERYLADLEKEIPEVDGWYGKFNYKK----L 112

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
            +   G+             E  +     +       A++ I EGCD+ C +C +P   G
Sbjct: 113 LKDLNGE-------------EYNACEGKRHITTPRHYAYIKISEGCDRHCAYCAIPLITG 159

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
              SR + +++DE R L+  G  E  ++ Q +  + G  LDG K   ++L+  +++I G+
Sbjct: 160 KHQSRPMQEILDEVRYLVSQGTKEFNVIAQELT-YYGVDLDG-KQHIAELIEQMADIPGV 217

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
             +R   ++P      L++   +   +  YL + +Q  SD +L  M R  T  E  +++ 
Sbjct: 218 EWIRLHYAYPTHFPWDLLRVIREKQNVCKYLDIALQHVSDNMLSRMRRHVTKDETYELVR 277

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NML 379
           R+R   P I I +  +VGFPGETD+DF      V    + +  +F YS   GT  + N  
Sbjct: 278 RMREEVPGIHIRTTLMVGFPGETDEDFEELKAFVKWARFERMGAFSYSEEEGTYSADNFE 337

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWL 435
           + V E+VK  RL  + +  +          VG++ +V+I++  +E    +GR+    P +
Sbjct: 338 DDVPEDVKQSRLDKIMRIQQNISAELEAEKVGKVFKVIIDR--REGDYYIGRTEFCSPEV 395

Query: 436 QS-VVLNSKNHN--IGDIIKVRITDVKISTLYGELVV 469
              V++ +      IG+   V ITD +   LYG  ++
Sbjct: 396 DPEVLIPAAEAKLTIGNFYDVLITDSEEFDLYGTTII 432


>gi|34496828|ref|NP_901043.1| oxidoreductase [Chromobacterium violaceum ATCC 12472]
 gi|81656320|sp|Q7NYA1|RIMO_CHRVO RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|34102683|gb|AAQ59048.1| probable oxidoreductase [Chromobacterium violaceum ATCC 12472]
          Length = 438

 Score =  362 bits (929), Expect = 7e-98,   Method: Composition-based stats.
 Identities = 123/454 (27%), Positives = 189/454 (41%), Gaps = 36/454 (7%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R    S GC     DS ++     ++GYE   S D ADL+V+NTC   + A E+    +G
Sbjct: 6   RVGFVSLGCPKAASDSEQILTRLRAEGYEIAPSYDGADLVVVNTCGFIDSAVEESLDAIG 65

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                         +  V+V GC+  A+G+ +    P V  V GP     +   +     
Sbjct: 66  EA---------LNENGKVIVTGCLG-AKGDVVRDVHPSVLAVTGPHATEEVMSAVHTHLP 115

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                       D F  L + D G        A+L I EGC+  CTFC++P  RG   SR
Sbjct: 116 ---------KPHDPFVDL-VPDIGVRLTPKHYAYLKISEGCNHRCTFCIIPSMRGDLESR 165

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK------GLDGE--KCTFSDLLYSLSEI 257
            +  V+ EA  L   GV EI ++ Q+ +A+           +G   K   ++L   L   
Sbjct: 166 PIHDVLREAESLAKAGVKEILVISQDTSAYGVDTKYKLGFHNGRPVKTRMTELCEELGRH 225

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
              VRL Y   +P       +        ++PYL +P Q  S ++LK M R   +     
Sbjct: 226 GIWVRLHYVYPYPHVDEVIPLM---RDGKILPYLDIPFQHASQKVLKLMKRPANSDNVLA 282

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
            I + R + P++ I S FIVGFPGET++DF   +  + +    +   F YSP  G   + 
Sbjct: 283 RIKKWREICPELVIRSTFIVGFPGETEEDFEELLAFIREAELDRVGCFTYSPVEGATANE 342

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG---KLVGRSPW 434
           +   V E+VK  R         E      +  VGQ ++VL+++   E     +    +P 
Sbjct: 343 LPNPVPEDVKEARKERFMAVQAEISARRLERRVGQTLQVLVDEIDDEGTAVCRSYADAPE 402

Query: 435 LQSVVLNSKNH--NIGDIIKVRITDVKISTLYGE 466
           +  +V          G+  +V I D     L+GE
Sbjct: 403 IDGLVFVEDAAGMQPGEFYQVEIVDCSEHDLWGE 436


>gi|29346323|ref|NP_809826.1| putative Fe-S oxidoreductase [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|81445146|sp|Q8A9A2|RIMO_BACTN RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|29338218|gb|AAO76020.1| putative Fe-S oxidoreductase [Bacteroides thetaiotaomicron
           VPI-5482]
          Length = 436

 Score =  362 bits (929), Expect = 7e-98,   Method: Composition-based stats.
 Identities = 114/454 (25%), Positives = 207/454 (45%), Gaps = 35/454 (7%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEKVYS 82
           +R  + + GC  N+ DS ++       GY   +  +  + ++ V+NTC     A E+  +
Sbjct: 4   KRIDIITLGCSKNLVDSEQLMRQLEEAGYSVTHDTENPEGEIAVINTCGFIGDAKEESIN 63

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +      K      G    + V GC+++   +E+    P V+   G   +  L + L +
Sbjct: 64  MILEFAERKEE----GDLKKLFVMGCLSERYLQELAIEIPQVDKFYGKFNWKELLQDLGK 119

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
                      Y  E   ER       Y       A+L I EGCD+ C++C +P   G  
Sbjct: 120 T----------YHEELYIERTLTTPKHY-------AYLKISEGCDRKCSYCAIPIITGRH 162

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           IS+S+ +++DE R L+  GV E  ++ Q +  + G  L  +K    +L+  +SEI G+  
Sbjct: 163 ISKSMEEILDEVRYLVSQGVKEFQVIAQELT-YYGVDLY-KKQMLPELIERISEIPGVEW 220

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R   ++P      L +   + D +  Y+ + +Q  SD +LK M R+ +  +  ++I++ 
Sbjct: 221 IRLHYAYPAHFPTDLFRVMRERDNVCKYMDIALQHISDNMLKLMRRQVSKEDTYKLIEQF 280

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQ 381
           R   P I + +  +VG PGET++DF    + V K  + +  +F YS   GT  +    + 
Sbjct: 281 RKEVPGIHLRTTLMVGHPGETEEDFEELKEFVRKARFDRMGAFAYSEEEGTYAAQQYEDS 340

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQS 437
           + + VK  RL  L    +      + A +GQ ++V+I++   E    +GR+    P +  
Sbjct: 341 IPQEVKQARLDELMDIQQGISAELSAAKIGQQMKVIIDRI--EGDYYIGRTEFDSPEVDP 398

Query: 438 VVLNS---KNHNIGDIIKVRITDVKISTLYGELV 468
            VL S   +   +G   +V +TD     LY +++
Sbjct: 399 EVLISVSREELEVGQFYQVEVTDADDFDLYAKIL 432


>gi|212693204|ref|ZP_03301332.1| hypothetical protein BACDOR_02714 [Bacteroides dorei DSM 17855]
 gi|212664309|gb|EEB24881.1| hypothetical protein BACDOR_02714 [Bacteroides dorei DSM 17855]
          Length = 432

 Score =  362 bits (929), Expect = 7e-98,   Method: Composition-based stats.
 Identities = 109/453 (24%), Positives = 203/453 (44%), Gaps = 35/453 (7%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDA--DLIVLNTCHIREKAAEKVYSF 83
              + + GC  N+ DS ++     + GY+  +  D    ++ V+NTC     A E+  + 
Sbjct: 5   TIDIITLGCSKNLVDSEKLMRQLEANGYKVTHDSDKPQGEIAVINTCGFIGDAKEESINM 64

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +      K      G    + V GC+++   +E+    P V+   G   +  L   L +A
Sbjct: 65  ILEFCQAKEE----GKLKKLYVMGCLSERYLKELALEIPQVDKFYGKFNWNELLADLGKA 120

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
                     Y  E   ER       Y       A+L I EGCD+ C++C +P   G  I
Sbjct: 121 ----------YKAEFAIERTLTTPHHY-------AYLKISEGCDRKCSYCAIPIITGRHI 163

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR + +++DE + L+  GV E  ++ Q +  + G  L  +     +L+  ++ + G+  +
Sbjct: 164 SRPMEEIIDEVKLLVSEGVKEFQIIAQELT-YYGVDLY-KSQKLPELIERIANVPGVEWI 221

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R   ++P    + L +   + D +  Y+ + +Q  SD +L  M R  +  E  ++I++ R
Sbjct: 222 RLHYAYPAHFPEELFRVMREHDNVCKYMDIALQHISDNMLNKMRRHVSKAETYELIEKFR 281

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN-MLEQV 382
              P I + +  +VG PGE ++DF    + V K+ + +  +F YS   GT  +    + +
Sbjct: 282 REVPGIHLRTTLMVGHPGEAEEDFEELKEFVKKVRFDRMGAFAYSEEEGTFAAKEYEDSI 341

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQS- 437
              VK +RL  L    +E     +   +G+  +V+I++  KE    +GR+    P +   
Sbjct: 342 SHEVKQQRLDELMALQQEIAGELSQTKIGKEFKVIIDR--KEGDYYIGRTQFDSPEVDPE 399

Query: 438 VVLNSKNH--NIGDIIKVRITDVKISTLYGELV 468
           V++ + +    IG+  KV+IT      LY  ++
Sbjct: 400 VLIKADDEYLKIGEFYKVKITAADDFDLYASIL 432


>gi|198274636|ref|ZP_03207168.1| hypothetical protein BACPLE_00788 [Bacteroides plebeius DSM 17135]
 gi|198272083|gb|EDY96352.1| hypothetical protein BACPLE_00788 [Bacteroides plebeius DSM 17135]
          Length = 433

 Score =  362 bits (929), Expect = 7e-98,   Method: Composition-based stats.
 Identities = 108/457 (23%), Positives = 204/457 (44%), Gaps = 35/457 (7%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEK 79
           +      + + GC  N+ DS ++     + GY+  +  D    ++ V+NTC     A E+
Sbjct: 1   MRKNTIDIITLGCSKNLVDSEKLMKQLEANGYKVTHDSDHPQGEIAVINTCGFIGDAKEE 60

Query: 80  VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL 139
             + +      K      G    + V GC+++   +++    P V+   G   +  L   
Sbjct: 61  SINMILEFCQAKEE----GRLKKLYVMGCLSERYLKDLQMEIPQVDKFYGKFNWDELLAD 116

Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           L +A   +  ++                  +       A+L I EGCD+ C++C +P   
Sbjct: 117 LGKAYHSEFAIE-----------------RHLTTPKHYAYLKISEGCDRKCSYCAIPIIT 159

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G  +SR + +++DE R L+  GV E  ++ Q +  + G  L  +K    +L+  ++ I G
Sbjct: 160 GKHVSRPMEEILDEVRLLVSEGVKEFQVIAQELT-YYGVDLY-KKQMLPELIEQMAHIPG 217

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           +  +R   ++P    + L +   + D +  Y+ + +Q  SD +L+ M R  T  E  Q+I
Sbjct: 218 VEWIRLHYAYPAHFPEDLFRVMRENDNVCKYMDIALQHISDNMLQKMRRHVTKAETYQLI 277

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN-M 378
           ++ R   P I + +  +VG PGET+ DF   M+ V    + +  +F YS   GT  +   
Sbjct: 278 EKFRKEVPGIHLRTTLMVGHPGETEQDFEELMEFVRTARFDRMGAFAYSEEEGTYSAKHY 337

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PW 434
            +++ + VK +RL  L +  +E     +   +GQ  +V+I++  KE    +GR+    P 
Sbjct: 338 KDEIPQEVKQQRLDKLMELQQEISADLSHRKIGQEFKVIIDR--KEGDYYIGRTQFDSPE 395

Query: 435 LQSVV---LNSKNHNIGDIIKVRITDVKISTLYGELV 468
           +   V   + +    IG   +V++ D     LY  +V
Sbjct: 396 VDPEVLIKVENHRLRIGSFHRVKVYDADDFDLYATIV 432


>gi|288802186|ref|ZP_06407626.1| 2-methylthioadenine synthetase [Prevotella melaninogenica D18]
 gi|288335153|gb|EFC73588.1| 2-methylthioadenine synthetase [Prevotella melaninogenica D18]
          Length = 433

 Score =  362 bits (929), Expect = 8e-98,   Method: Composition-based stats.
 Identities = 123/450 (27%), Positives = 199/450 (44%), Gaps = 35/450 (7%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEKVYSFLGR 86
           + + GC  N+ DS  +   F   G+   +       ++ V+NTC   E A E+  + +  
Sbjct: 8   IVTMGCSKNLVDSELIMKQFEENGFHCTHDSKRPQGEIAVINTCGFIEAAKEESINTILE 67

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
             N K    K G    + V GC++Q   +E+    P V+   G   Y             
Sbjct: 68  FINRK----KNGQLNKLYVMGCLSQRYKDELEAELPEVDKFYGKFNY------------- 110

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
            + + TD    D      +      R     A++ I EGCD+ C +C +P   G   SRS
Sbjct: 111 -KQLLTDLGKADVPACNGVRHLTTPR---HYAYVKIAEGCDRHCAYCAIPLITGRHHSRS 166

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
           + +++DE R L+  GV E  ++ Q +  + G  LDG K   ++L+  +++I+G+  +R  
Sbjct: 167 VEEILDEVRGLVAQGVKEFQIIEQELT-YYGVDLDG-KHHITELISRMADIEGVEWIRLH 224

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
            ++P      L+    +   +  YL +  Q  SD +L  M R  +  E   +I  IR   
Sbjct: 225 YAYPNQFPLDLLDVIAEKPNVCKYLDIAFQHISDHMLNRMRRHVSKQETLDLIAEIRRRV 284

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP-GSNMLEQVDEN 385
           P I + +  +VGFPGE+D+DF    + V    + +  +F YS   GT   ++  + V E+
Sbjct: 285 PGIHLRTTLLVGFPGESDEDFEELKEFVTNARFERMGAFSYSEEEGTYSANHYKDDVPED 344

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVLN 441
           VK  RL  L    +          VG+  +V+I++  KE    VGR+    P +   VL 
Sbjct: 345 VKQARLDELMAIQQGISEELEAEKVGKTFKVIIDR--KEGEYYVGRTEFCSPEVDPEVLI 402

Query: 442 S---KNHNIGDIIKVRITDVKISTLYGELV 468
           S   K   IG    V ITD     L+GE+V
Sbjct: 403 SSAEKPLRIGKFYDVCITDSDEFDLFGEVV 432


>gi|167763123|ref|ZP_02435250.1| hypothetical protein BACSTE_01492 [Bacteroides stercoris ATCC
           43183]
 gi|167699463|gb|EDS16042.1| hypothetical protein BACSTE_01492 [Bacteroides stercoris ATCC
           43183]
          Length = 432

 Score =  362 bits (929), Expect = 8e-98,   Method: Composition-based stats.
 Identities = 108/454 (23%), Positives = 199/454 (43%), Gaps = 35/454 (7%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEKVYS 82
           +   + + GC  N+ DS  +       G+   +  +    ++ V+NTC     A E+  +
Sbjct: 4   KTIDIITLGCSKNLVDSEHLMRQLEEAGFHVTHDAERPKGEIAVINTCGFIGDAKEESIN 63

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +      K      G    + V GC+++   +E+    P V+   G   +  L + L +
Sbjct: 64  MILEFAQAKEE----GELEKLYVMGCLSERYLKELAIEIPQVDKFYGKFNWKELLQDLGK 119

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           A          Y  E   ER       Y       A+L I EGCD+ C++C +P   G  
Sbjct: 120 A----------YHDELHIERTLTTPQHY-------AYLKISEGCDRKCSYCAIPIITGRH 162

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR + +++DE + L+  GV E  ++ Q +  + G  L  ++     L+  +SEI G+  
Sbjct: 163 VSRPMEEILDEVKYLVARGVKEFQVIAQELT-YYGVDLY-KRQMLPQLIEKISEIPGVEW 220

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R   ++P      L +   +   +  Y+ + +Q  SD +L+ M R  T  +  ++I++ 
Sbjct: 221 IRLHYAYPAHFPMDLFRVMRERPNVCKYMDIALQHISDNMLEKMRRHVTKEDTYRLIEKF 280

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT-PGSNMLEQ 381
           R   P I + +  +VG PGET+ DF    + V K+ + +  +F YS   GT   ++  + 
Sbjct: 281 REEVPGIHLRTTLMVGHPGETEADFEELKEFVRKVRFDRMGAFAYSEEEGTYAAAHYEDS 340

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQS 437
           + + VK  RL  L    +      + A VG+ + V+I++   E    +GR+    P +  
Sbjct: 341 IPQEVKQARLDELMSIQQGISAELSAAKVGRQMRVIIDRL--EGDYYIGRTEFDSPEVDP 398

Query: 438 VVLN---SKNHNIGDIIKVRITDVKISTLYGELV 468
            VL     +   IG   +V I +     L+G ++
Sbjct: 399 EVLIECGDEPLEIGGFYQVEIINSDDFDLFGRII 432


>gi|325854348|ref|ZP_08171547.1| ribosomal protein S12 methylthiotransferase RimO [Prevotella
           denticola CRIS 18C-A]
 gi|325484142|gb|EGC87076.1| ribosomal protein S12 methylthiotransferase RimO [Prevotella
           denticola CRIS 18C-A]
          Length = 434

 Score =  362 bits (929), Expect = 8e-98,   Method: Composition-based stats.
 Identities = 121/450 (26%), Positives = 201/450 (44%), Gaps = 35/450 (7%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEKVYSFLGR 86
           + + GC  N+ DS  +   F + GY   +  +    ++ V+NTC   E A E+  + +  
Sbjct: 8   IVTMGCSKNLVDSELIMKQFEANGYHCTHDAENPQGEIAVINTCGFIEAAKEESINTILE 67

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
             N K    K G    + V GC++Q   +E+    P V+   G   Y +L   L +A   
Sbjct: 68  FANRK----KNGQLNRLYVMGCLSQRYKDELEAELPEVDKFYGKFNYKQLLSDLGKA--- 120

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
                 D    +    L+             A++ I EGCD+ C +C +P   G   SR+
Sbjct: 121 ------DIPACNGVRHLTTPHH--------YAYVKIAEGCDRHCAYCAIPLITGRHHSRT 166

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
           +  V+DE + L+  GV E  ++ Q +  + G  LDG K   ++L+  +++I+G+  +R  
Sbjct: 167 VEDVLDEVKGLVAQGVKEFQIIEQELT-YYGVDLDG-KHHITELISRMADIEGVEWIRLH 224

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
            ++P      L+        +  YL +  Q  SD +L  M+R  T  E   +I  IR   
Sbjct: 225 YAYPNQFPLDLLDVIAGKPNVCKYLDIAFQHISDHMLGRMHRHVTKQETLDLIAEIRRRV 284

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP-GSNMLEQVDEN 385
           P I + +  +VGFPGET+ DF      V ++ + +  +F YS   GT   ++  + V E 
Sbjct: 285 PGIHLRTTLLVGFPGETEKDFEELKTFVREVRFERMGAFAYSEEEGTYSATHYEDDVPEK 344

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVV-- 439
           VK +R+  L K  +          VG+  +V+I++   E    +GR+    P +   V  
Sbjct: 345 VKQQRIDELMKIQQGISEELEGEKVGRGFKVIIDRI--EGEYYIGRTEFCSPEVDPEVLI 402

Query: 440 -LNSKNHNIGDIIKVRITDVKISTLYGELV 468
            +  K    G    VRITD     L+GE+V
Sbjct: 403 PIEGKTLQTGRFYDVRITDSDEFDLFGEVV 432


>gi|189465617|ref|ZP_03014402.1| hypothetical protein BACINT_01975 [Bacteroides intestinalis DSM
           17393]
 gi|189437891|gb|EDV06876.1| hypothetical protein BACINT_01975 [Bacteroides intestinalis DSM
           17393]
          Length = 432

 Score =  362 bits (929), Expect = 9e-98,   Method: Composition-based stats.
 Identities = 113/454 (24%), Positives = 203/454 (44%), Gaps = 35/454 (7%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDA--DLIVLNTCHIREKAAEKVYS 82
           +   + + GC  N+ DS  +       GY   +  +    ++ V+NTC     A E+  +
Sbjct: 4   KTIDIITLGCSKNLVDSEHLMRQLEEAGYHVTHDTEKPKGEIAVINTCGFIGDAKEESIN 63

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +      K      G    + V GC+++   +E+    P V+   G   +  L   L +
Sbjct: 64  MILEFAQAKEE----GNLEKLYVMGCLSERYLKELAIEIPQVDKFYGKFNWAELLLDLGK 119

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           A          Y  E   ER       Y       A+L I EGCD+ C++C +P   G  
Sbjct: 120 A----------YHEELHIERTLTTPKHY-------AYLKISEGCDRKCSYCAIPIITGRH 162

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR + +++DE R L++ GV E  ++ Q +  + G  L  +K    +L+  +SEI G+  
Sbjct: 163 VSRPVEEILDEVRYLVNKGVKEFQIIAQELT-YYGVDLY-KKQMLPELIERISEIPGVEW 220

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R   ++P      L +   +   +  Y+ + +Q  S+ +L+ M R  T  E  Q+I++ 
Sbjct: 221 IRLHYAYPAHFPTDLFRVMRERPNVCKYMDIALQHISNSMLEKMRRHVTQEETYQLIEQF 280

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT-PGSNMLEQ 381
           R   P I + +  +VG PGET+ DF    + V K+ + +  +F YS   GT   ++  ++
Sbjct: 281 RKEVPGIHLRTTLMVGHPGETESDFEELKEFVRKVRFDRMGAFAYSEEEGTYAAAHYEDE 340

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQS 437
           + + VK  RL  L    +      + A VGQ ++V+I++   E    +GR+    P +  
Sbjct: 341 IPQEVKQARLDELMSIQQGISAELSAAKVGQSMKVIIDRL--EGDYYIGRTEFDSPEVDP 398

Query: 438 VVLNSKNH---NIGDIIKVRITDVKISTLYGELV 468
            VL  +      IG+  +V I       L+G+++
Sbjct: 399 EVLIERGEQTLLIGNFYQVEIISSDDFDLFGQVI 432


>gi|307729597|ref|YP_003906821.1| MiaB-like tRNA modifying enzyme YliG [Burkholderia sp. CCGE1003]
 gi|307584132|gb|ADN57530.1| MiaB-like tRNA modifying enzyme YliG [Burkholderia sp. CCGE1003]
          Length = 463

 Score =  362 bits (929), Expect = 9e-98,   Method: Composition-based stats.
 Identities = 121/469 (25%), Positives = 206/469 (43%), Gaps = 48/469 (10%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC   + DS ++     ++GYE   + + ADL+V+NTC   ++A ++    +G
Sbjct: 16  KVGFVSLGCPKALVDSEQIITQLRAEGYEISGTYNGADLVVVNTCGFIDEAVQESLDAIG 75

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEE----ILRRSPIVNVVVGPQTYYRLPELLE 141
                         +  V+V GC+   +       I    P V  V GP     + + + 
Sbjct: 76  EA---------LNENGKVIVTGCLGAKKSASGSGLIEEVHPKVLAVTGPHALGEVMQHVH 126

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
                           D F  L     G        A+L I EGC+  CTFC++P  RG 
Sbjct: 127 THLP---------KPHDPFVDLVPA-AGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGD 176

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYS 253
            +SR +++V+ EA  L  +GV E+ ++ Q+ +A+      R    +G+  K   +DL+ +
Sbjct: 177 LVSRPVAEVMLEAENLFKSGVKELLVISQDTSAYGVDVKYRTGFWNGKPLKTRMTDLVGA 236

Query: 254 LSEI----KGLVRLRYTTSHPRDMSDCLIKAHGDLD-VLMPYLHLPVQSGSDRILKSMNR 308
           L E+       VRL Y   +P       + A G     ++PYL +P Q     +LK M R
Sbjct: 237 LGELAAQYGAWVRLHYVYPYPSVDEVIPMMAAGPYKGHVLPYLDVPFQHAHPEVLKRMKR 296

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
              A +  + +   R + PD+ I S FI GFPGET++ F   +D + +    +   F YS
Sbjct: 297 PANAEKVMERVKAWREMCPDLTIRSTFIAGFPGETEEQFETLLDFIREAELDRVGCFAYS 356

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL 428
           P  G   + +   + + V+ ER     +   +         VG+ ++VL+++   + G  
Sbjct: 357 PVEGASANELDGALPDEVREERRARFMEVAEQVSAKRIAKKVGKTLKVLVDETNADGG-- 414

Query: 429 VGRS----PWLQSVVLNS------KNHNIGDIIKVRITDVKISTLYGEL 467
           +GR+    P +  VV  +      K + +GD + V+IT      L+GE+
Sbjct: 415 IGRTAADAPEIDGVVYIAPAAKASKRYKVGDFVSVKITGADGHDLWGEV 463


>gi|165977072|ref|YP_001652665.1| hypothetical protein APJL_1669 [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|303250798|ref|ZP_07336992.1| hypothetical protein APP6_1924 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|238065278|sp|B0BRW2|RIMO_ACTPJ RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|165877173|gb|ABY70221.1| hypothetical protein APJL_1669 [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|302650311|gb|EFL80473.1| hypothetical protein APP6_1924 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
          Length = 443

 Score =  361 bits (928), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 127/463 (27%), Positives = 211/463 (45%), Gaps = 41/463 (8%)

Query: 21  CIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKV 80
              P   F+ S GC  N+ DS R+     + GY  + S ++ADL+++NTC   + A ++ 
Sbjct: 2   STTPNIGFI-SLGCPKNLVDSERILTELRTDGYNIIPSYENADLVIVNTCGFIDSAVQES 60

Query: 81  YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140
              +G                 V+V GC+  A+  +I    P V  + GP +Y  + + +
Sbjct: 61  LEAIGEALEENGK---------VIVTGCLG-AKENQIREVHPKVLEITGPHSYEAVMKHV 110

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
            +              E       +   G        A+L I EGCD  CTFC++P  RG
Sbjct: 111 HKY---------VPRPERNIYTSLVPAQGVKLTPKHYAYLKISEGCDHRCTFCIIPSMRG 161

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNV----------NAWRGKGLDG--EKCTFS 248
              SR + QV+DEA++L D+GV E+ ++ Q+           N  +    +G   K    
Sbjct: 162 DLDSRPIVQVLDEAKRLADSGVKELLIVSQDTSAYALDQSKENQNKTVFWNGVPIKNNLI 221

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
            L   L  +   VRL Y   +P       + A G    ++PYL +P+Q  S ++LK+M R
Sbjct: 222 TLCEQLGTLGIWVRLHYVYPYPHVDDLIPLMAQG---KILPYLDIPLQHASPKVLKAMKR 278

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
                   + I + R + P++ + S FIVGFPGET++DF+  +D +++    +   FK+S
Sbjct: 279 PGAIDRTLERIKKWREICPELTLRSTFIVGFPGETEEDFQMLLDFLEEAQLDRVGCFKFS 338

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--G 426
           P  G   + M +QV E+VK ER     +  +    +     VG+ + V+I++  +E   G
Sbjct: 339 PVEGAVATEMADQVSEDVKEERFHRFMQVQQRISAARLQQKVGKTLAVIIDEIDEEGIIG 398

Query: 427 KLVGRSPWLQSVVLNSK----NHNIGDIIKVRITDVKISTLYG 465
           + +  +P +  VV           +G +I V IT+     L+G
Sbjct: 399 RSMADAPEIDGVVYVDNLSEQEVKVGQVISVSITNADEYDLWG 441


>gi|118086360|ref|XP_418914.2| PREDICTED: similar to CDK5 regulatory subunit associated protein
           1-like 1 [Gallus gallus]
          Length = 583

 Score =  361 bits (928), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 121/466 (25%), Positives = 219/466 (46%), Gaps = 24/466 (5%)

Query: 9   GVAHMVSQIVDQCIVP--QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIV 66
             A          ++P  Q+ +++++GC  N  D   M     + GY+  ++  +ADL +
Sbjct: 44  QRAQTDDDPPHDSVIPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITDNSAEADLWL 103

Query: 67  LNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNV 126
           LN+C ++  A +   + + + +              VV+AGCV QA+  +   +      
Sbjct: 104 LNSCTVKNPAEDHFRNSIKKAQEANKK---------VVLAGCVPQAQPRQDYLKG---LS 151

Query: 127 VVGPQTYYRLPELLERARFGKRVVDTDYSVED-KFERLSIVDGGYNRKRGVTAFLTIQEG 185
           ++G Q   R+ E++E    G  V       ++ K    + +D    RK  +   ++I  G
Sbjct: 152 IIGVQQIDRVVEVVEETIKGHSVRLLGQKKDNGKRLGGARLDLPKIRKNPLIEIISINTG 211

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARK-LIDNGVCEITLLGQNVNAWRGKGLDGEK 244
           C   CT+C   + RG   S  + ++VD A++   D GVCEI L  ++  A  G+ +  + 
Sbjct: 212 CLNACTYCKTKHARGDLASYPIEELVDRAKQSFQDEGVCEIWLTSEDTGA-YGRDIGTDL 270

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCL--IKAHGDLDVLMPYLHLPVQSGSDRI 302
            T   L   +  I     LR   ++P  + + L  +    +   +  +LH+PVQS SD +
Sbjct: 271 PTL--LWKLVEAIPEGAMLRLGMTNPPYILEHLEEMAKILNHPRVYAFLHIPVQSASDSV 328

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           L  M R +   ++R+++D ++   P I I++D I GFPGETD+DF+ TM LV++  +   
Sbjct: 329 LMDMKREYCVADFRRVVDFLKEKVPGITIATDIICGFPGETDEDFQETMKLVEQYKFPSL 388

Query: 363 FSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422
           F  ++ PR GTP + M  QV   VK +R   L +       +  D  VG+   VL+ +  
Sbjct: 389 FINQFYPRPGTPAAKMH-QVPAAVKKQRTKDLSQLF--HSYNPYDHKVGERQRVLVTEES 445

Query: 423 KEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            +    V  +P+ + V++      +G +++V I +     + G+ V
Sbjct: 446 FDSNYYVAHNPFYEQVLVPKDPALMGKMVEVNIYEAGKHFMKGQPV 491


>gi|302346577|ref|YP_003814875.1| ribosomal protein S12 methylthiotransferase RimO [Prevotella
           melaninogenica ATCC 25845]
 gi|302150859|gb|ADK97120.1| ribosomal protein S12 methylthiotransferase RimO [Prevotella
           melaninogenica ATCC 25845]
          Length = 433

 Score =  361 bits (928), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 122/450 (27%), Positives = 197/450 (43%), Gaps = 35/450 (7%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEKVYSFLGR 86
           + + GC  N+ DS  +   F   G+   +       ++ V+NTC   E A E+  + +  
Sbjct: 8   IVTMGCSKNLVDSELIMKQFEENGFHCTHDSKRPQGEIAVINTCGFIEAAKEESINTILE 67

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
             N K    K G    + V GC++Q   +E+    P V+   G   Y             
Sbjct: 68  FINRK----KNGQLNKLYVMGCLSQRYKDELEAELPEVDKFYGKFNY------------- 110

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
            + + TD    D      +      R     A++ I EGCD+ C +C +P   G   SRS
Sbjct: 111 -KQLLTDLGKADVPACNGVRHLTTPR---HYAYVKIAEGCDRHCAYCAIPLITGRHHSRS 166

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
           + +++DE R L+  GV E  ++ Q +  + G  LDG K   ++L+  +++I+G+  +R  
Sbjct: 167 VEEILDEVRGLVAQGVKEFQIIEQELT-YYGVDLDG-KHHITELISRMADIEGVEWIRLH 224

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
            ++P       +    +   +  YL +  Q  SD +L  M R  +  E   +I  IR   
Sbjct: 225 YAYPNQFPLDFLDVIAEKPNVCKYLDIAFQHISDHMLDRMRRHVSKQETLDLIAEIRRRV 284

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP-GSNMLEQVDEN 385
           P I + +  +VGFPGETD+DF    + V    + +  +F YS   GT   ++  + V E+
Sbjct: 285 PGIHLRTTLLVGFPGETDEDFEELKEFVTNARFERMGAFSYSEEEGTYSANHYKDDVPED 344

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVLN 441
           VK  RL  L    +          VG+  +V+I++  KE    VGR+    P +   VL 
Sbjct: 345 VKQARLDELMAIQQGISEELEAEKVGKTFKVIIDR--KEGEYYVGRTEFCSPEVDPEVLI 402

Query: 442 SKNHN---IGDIIKVRITDVKISTLYGELV 468
           S       IG    V ITD     L+GE+V
Sbjct: 403 SSTEKSLRIGKFYDVCITDSDEFDLFGEVV 432


>gi|307565341|ref|ZP_07627834.1| ribosomal protein S12 methylthiotransferase RimO [Prevotella amnii
           CRIS 21A-A]
 gi|307346010|gb|EFN91354.1| ribosomal protein S12 methylthiotransferase RimO [Prevotella amnii
           CRIS 21A-A]
          Length = 432

 Score =  361 bits (928), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 126/449 (28%), Positives = 200/449 (44%), Gaps = 35/449 (7%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDAD--LIVLNTCHIREKAAEKVYSFLGR 86
           + + GC  N+ DS  +   F + G++  +  D  D  + V+NTC   E A E+  + +  
Sbjct: 8   IITMGCSKNLVDSELLMKQFEANGFKCTHDSDKPDGEIAVINTCGFIETAKEESINTILE 67

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
             N K      G    + V GC++Q   EE+ +  P V+   G   Y +L   L +A   
Sbjct: 68  FVNRKEK----GQLNKLFVMGCLSQRYKEELKKEIPEVDKFYGKFNYKQLLTDLGKASVA 123

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
                            S     +       A++ I EGCD+ C +C +P   G   SR 
Sbjct: 124 -----------------SCNGVRHLTTPRHYAYIKIAEGCDRHCAYCAIPLITGKHQSRK 166

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
           +  V+ E  +L+  GV E  ++ Q +  + G  +DG K   SDL+  +++IKG+  +R  
Sbjct: 167 MEDVLQEVEQLVKEGVKEFQIIEQELT-YYGVDIDG-KHHISDLISKIADIKGVEWIRLH 224

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
            ++P      L+    D   +  YL +  Q  SD +L  M+R  +  E   +I  IRS  
Sbjct: 225 YAYPNQFPLSLLDVIADKPNVCKYLDIAFQHISDNMLNRMHRHVSKQETLSLIKEIRSRV 284

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP-GSNMLEQVDEN 385
           P+I + +  +VGFPGETD+DF    D V +  + +  +F YS   GT    +  + V E 
Sbjct: 285 PNIHLRTTLLVGFPGETDEDFEELKDFVRQARFERMGAFSYSREEGTYSAEHYEDDVPEE 344

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVL- 440
           VK +RL  L    ++       A VG   +V+I++  KE    VGR+    P +   VL 
Sbjct: 345 VKMQRLNELMAIQQDISTEIERAKVGHTFKVIIDR--KEGDYYVGRTEFCSPEVDPEVLI 402

Query: 441 --NSKNHNIGDIIKVRITDVKISTLYGEL 467
                   +G+   V IT      LYGE+
Sbjct: 403 PMKEDTLRVGEFYNVYITSSDEFDLYGEI 431


>gi|254283413|ref|ZP_04958381.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [gamma
           proteobacterium NOR51-B]
 gi|219679616|gb|EED35965.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [gamma
           proteobacterium NOR51-B]
          Length = 448

 Score =  361 bits (928), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 133/454 (29%), Positives = 201/454 (44%), Gaps = 33/454 (7%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           PQR    S GC   + DS R+       GYE   S +DA ++++NTC   + A  +    
Sbjct: 13  PQRVGFVSLGCPKALVDSERILTQLRLDGYEVTPSYEDAGVVIVNTCGFIDSAKAESLEA 72

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQ-AEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
           +G              +  V+V GC+ + A+ E IL   P V  + GP  Y  +   + R
Sbjct: 73  IGEAIE---------ENGRVLVTGCMGKGADAEAILEAHPKVLGITGPAAYEEVLSEVRR 123

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
               K   D    +        I   G        A+L I EGC+  C FCV+P  RG  
Sbjct: 124 VLPNKHKPDPTIDL--------IPAQGVKLTPRHYAYLKISEGCNHRCRFCVIPSMRGDL 175

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYSL 254
           +SR + +V+ EA  L+  GV EI ++ Q+ +A+      R    DG   K     L  +L
Sbjct: 176 VSRPIGEVMREAEGLVRAGVREILVISQDTSAYGVDLRYRTDFWDGRPLKTNLETLAATL 235

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
            E+   +RL Y   +P       + A G    ++PYL +P+Q GS  +L+ M R   A +
Sbjct: 236 GELGVWIRLHYVYPYPHVDKVIPLMADG---KILPYLDIPLQHGSPAVLERMKRPAAAEK 292

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
               I R R V PDI + S FIVG+PGETD +F+  +D ++     +   FKYSP  G  
Sbjct: 293 TLDRIHRWREVCPDITLRSTFIVGYPGETDAEFQELLDFMESAQLDRVGCFKYSPVAGAA 352

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRS 432
            +++   V E VK ER        +          VG  I+VLI++   E   G+    +
Sbjct: 353 ANDLPNPVPEAVKEERWQIFMALQQRISADKLQRKVGSTIDVLIDQVDSEGAIGRSAADA 412

Query: 433 PWLQS-VVLNS-KNHNIGDIIKVRITDVKISTLY 464
           P +   V L    + + GD ++  +T      L+
Sbjct: 413 PEIDGLVHLPGASDLSPGDRVRGEVTAADDYDLW 446


>gi|309782622|ref|ZP_07677344.1| Fe-S oxidoreductase family 1 [Ralstonia sp. 5_7_47FAA]
 gi|308918597|gb|EFP64272.1| Fe-S oxidoreductase family 1 [Ralstonia sp. 5_7_47FAA]
          Length = 453

 Score =  361 bits (927), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 119/475 (25%), Positives = 204/475 (42%), Gaps = 46/475 (9%)

Query: 17  IVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA 76
           + D      +    S GC   + DS ++     ++GYE   +   ADL+V+NTC   ++A
Sbjct: 1   MSDVSTQSPKVGFVSLGCPKALVDSEQIITQLRAEGYEISGTYGGADLVVVNTCGFIDEA 60

Query: 77  AEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQ----AEGEEILRRSPIVNVVVGPQT 132
            ++    +G                 V+V GC+      A  + I    P V  V GP  
Sbjct: 61  VQESLDAIGEALAENGK---------VIVTGCLGAKKDAAGQDIITSVHPKVLAVTGPHA 111

Query: 133 YYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTF 192
              + E +                 D F  L +   G        A+L I EGC+  C+F
Sbjct: 112 LGEVMEAVHTHLP---------KPHDPFIDL-VPPQGIKLTPKHYAYLKISEGCNHRCSF 161

Query: 193 CVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--K 244
           C++P  RG  +SR +++V+ EA  L+  GV E+ ++ Q+ +A+      R    +G   K
Sbjct: 162 CIIPSMRGDLVSRPVAEVMLEAENLLKAGVKELLVISQDTSAYGVDVKFRMGFWNGRPLK 221

Query: 245 CTFSDLLYSLSEI----KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300
              ++L+ +L E+       VRL Y   +P       + A G    ++PYL +P+Q    
Sbjct: 222 TRMTELVGALGELASQYGAWVRLHYVYPYPSVDEVMPLMAEG---KVLPYLDVPLQHAHP 278

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
            +LK M R   A +    I   R V P++ I S FI GFPGET+++F+  +D + +    
Sbjct: 279 DVLKRMKRPANAEKTLDRIRAWREVCPELTIRSTFIAGFPGETEEEFQTLLDFIAEAELD 338

Query: 361 QAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
           +   F YSP  G   +++   + + V+ ER     +             VG+ + VL+++
Sbjct: 339 RVGCFAYSPVEGATANDLPGALPDEVREERRARFMEVAERVSARRLQRKVGKSLRVLVDE 398

Query: 421 HGKEK--GKLVGRSPWLQSVVLNSKNHNI------GDIIKVRITDVKISTLYGEL 467
             ++   G+    +P +  +V  +           GD + V+IT      L+GE+
Sbjct: 399 VNQDGGIGRSSADAPEIDGLVYIAPPSKPYKRYKAGDFVSVKITGADGHDLWGEV 453


>gi|317051390|ref|YP_004112506.1| MiaB-like tRNA modifying enzyme YliG [Desulfurispirillum indicum
           S5]
 gi|316946474|gb|ADU65950.1| MiaB-like tRNA modifying enzyme YliG [Desulfurispirillum indicum
           S5]
          Length = 440

 Score =  361 bits (927), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 120/449 (26%), Positives = 210/449 (46%), Gaps = 19/449 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
             +  S GC  N+ D+ RM      +  + V+    AD+I +NTC     A ++  S + 
Sbjct: 3   TLYTISLGCSKNLVDTERMLARLLRRPVDPVDDPAAADIIFINTCGFILDAKDESISTIV 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                 +   ++G   +++VAGC+     +++ +  P V++ +   T     E +     
Sbjct: 63  E----HSQFKQDGRCQVLIVAGCLVTLYEQQLRQELPEVDIFI--DTKESSMESIGDQLS 116

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            + V   +++ +D  E L              A+L I EGC   CT+CV+P  RG   S 
Sbjct: 117 RRLV---NFTPQDHLEALP--GERLLTTPSYMAYLKIAEGCSNTCTYCVIPRIRGPYQSV 171

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
              ++V EAR+L  +GV E+ L+ Q+     G  L G++ + + LL  L++I+ L  +R 
Sbjct: 172 PQEKLVSEARELAASGVRELVLISQDSTE-YGLDLYGKR-SLAPLLAELAKIENLHWIRV 229

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
             ++P    D LI+       +  Y+ +P Q  S+ +LK MNR     +   ++ R+R  
Sbjct: 230 LYTYPNHFDDELIETIAREPKICKYVDIPFQHMSNSVLKRMNRHIRVEQMENLVQRLRQR 289

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P IAI +  + GFPGET+ DF+A ++ V+++ +    +F YS         +  +V+ +
Sbjct: 290 IPGIAIRTTMLTGFPGETEADFQALLEGVERVQFDHLGAFAYSDEELAASHKLPGKVNPD 349

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GR----SPWLQS-VV 439
              ER   L +      +  N+  VGQ  EVL+E   +E   L+ GR    +P +   ++
Sbjct: 350 TARERAEALMELQHSISLRRNEQRVGQTFEVLVEGISQETELLLQGRASFQAPEVDGHIL 409

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
           +N    + GD + VRI       L G +V
Sbjct: 410 INDGTAHPGDFVMVRIEQALPYDLVGGMV 438


>gi|221134267|ref|ZP_03560572.1| MiaB-like tRNA modifying enzyme YliG [Glaciecola sp. HTCC2999]
          Length = 481

 Score =  361 bits (927), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 123/465 (26%), Positives = 204/465 (43%), Gaps = 34/465 (7%)

Query: 15  SQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIRE 74
           +Q   Q     +    S GC  N+ DS R+     ++GY+ V++ +DA+L+++NTC   +
Sbjct: 35  AQHGTQNSTAAKIGFVSLGCPKNLVDSERILTQLRTEGYDVVSTYNDAELVIVNTCGFID 94

Query: 75  KAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYY 134
            A E+    +G                 V+V GC+   E +EI    P V  + GP  Y 
Sbjct: 95  SAVEESLDTIGEALAENGK---------VIVTGCLGVKE-DEIREVHPNVLSITGPHAYE 144

Query: 135 RLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCV 194
            + E +                        + D G        A+L I EGC+  CTFC+
Sbjct: 145 SVVEQVHEHLP---------KPAHNPYLNLVPDHGVKLTPKHYAYLKISEGCNHRCTFCI 195

Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA------WRGKGLDGE--KCT 246
           +P  RG  +SR + +V++EA++L   GV E+ ++ Q+ +A       +    DG   K  
Sbjct: 196 IPSMRGDLVSRPVGEVLNEAKRLKAAGVNELLVISQDTSAYGVDVKHKTDFWDGMPVKTH 255

Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306
            + L   L  +   VRL Y   +P       +   G    ++PYL +P Q  S RIL+ M
Sbjct: 256 MNQLCEQLGTLDMWVRLHYVYPYPHVDDLIPLMTQG---KVLPYLDIPFQHASKRILRLM 312

Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
            R  +A      I + R + P++ I S FIVGFPGET+ +F   +  ++     +A  FK
Sbjct: 313 KRPGSADRTIDRIKKWREICPELIIRSTFIVGFPGETEAEFEELLAFLEAAQIDRAGCFK 372

Query: 367 YSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK- 425
           YSP  G   + + + + E+VK ERL        +         +G+  +V+I++   E  
Sbjct: 373 YSPVEGATANALPDHIPEDVKEERLARFMAVQSQISAQRLQTRIGKEYQVVIDEVTSEGA 432

Query: 426 -GKLVGRSPWLQSVVLNSK--NHNIGDIIKVRITDVKISTLYGEL 467
            G+    +P +  VV  +   +   G+ +   I       ++G L
Sbjct: 433 VGRCFADAPEVDGVVHLNGVFDVAPGERVWAEIIHADEHDIWGVL 477


>gi|303235727|ref|ZP_07322334.1| ribosomal protein S12 methylthiotransferase RimO [Prevotella
           disiens FB035-09AN]
 gi|302484174|gb|EFL47162.1| ribosomal protein S12 methylthiotransferase RimO [Prevotella
           disiens FB035-09AN]
          Length = 433

 Score =  361 bits (927), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 119/453 (26%), Positives = 207/453 (45%), Gaps = 42/453 (9%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEKVYSFLGR 86
           + + GC  N+ DS  +   F + GY+ V+  +  + ++ V+NTC   + A E+  + +  
Sbjct: 8   IITMGCSKNLVDSELLMKQFEANGYDCVHDSEKPEGEIAVINTCGFIDTAKEESINTILE 67

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR-- 144
             N K +    G    + V GC++Q   E++ +  P V+   G   +  L   L +A   
Sbjct: 68  FVNRKEN----GQLSKLFVMGCLSQRYKEDLEKEIPEVDKFYGKFNFKELLTDLGKAEVT 123

Query: 145 --FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
              G+R + T +                       A++ I EGCD+ C +C +P   G  
Sbjct: 124 ACNGRRSLTTPH---------------------HYAYIKIAEGCDRHCAYCAIPLITGKH 162

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR +  ++ E  +L   G  E  ++ Q +  + G  LDG K   ++L+  +++I G+  
Sbjct: 163 RSRKMEDILKEVAELAAAGTKEFQVIEQELT-YYGVDLDG-KHHITELISRMADIPGVEW 220

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R   ++P      L+    +   +  YL + +Q  SD +L  M R  T  E    I  +
Sbjct: 221 IRLHYAYPNQFPMDLLDVMREKPQVCKYLDVALQHVSDNMLTRMRRNVTKQETMDFIRSL 280

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQ 381
           R   P++ I +  +VGFPGET+ DF    + V    + +  +F YS   GT  + +  + 
Sbjct: 281 REKVPNLHIRTTLLVGFPGETEQDFEELKEFVRWARFERMGAFAYSHEEGTYSALHYEDD 340

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQS 437
           V E VK +RL  +    +E         +G++++V+I++  KE    +GR    SP +  
Sbjct: 341 VPEEVKQKRLDEIMAIQQEISAEIEAEKIGKVLKVIIDR--KEGEYYIGRSEFCSPEVDP 398

Query: 438 VVLN--SKNHNIGDIIKVRITDVKISTLYGELV 468
            VL    K   IG+  +VRITD     LYGE++
Sbjct: 399 EVLIQAEKTLKIGEFYQVRITDADEFDLYGEVL 431


>gi|299144166|ref|ZP_07037246.1| 2-methylthioadenine synthetase [Peptoniphilus sp. oral taxon 386
           str. F0131]
 gi|298518651|gb|EFI42390.1| 2-methylthioadenine synthetase [Peptoniphilus sp. oral taxon 386
           str. F0131]
          Length = 435

 Score =  361 bits (927), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 137/438 (31%), Positives = 232/438 (52%), Gaps = 15/438 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDD-ADLIVLNTCHIREKAAEKVY 81
           + + F + + GC++N Y+S  M ++F ++GY  V+   + +D+ ++NTC +   +  K  
Sbjct: 1   MKKSFSILTLGCKVNQYESEAMAELFENEGYLNVDFETEVSDIYIINTCTVTNLSDRKSR 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
            F+ R +       ++  + +V V GC +Q   EE+    P V++++G     R+ EL E
Sbjct: 61  QFIRRAK-------RDNPNSIVAVVGCYSQTSPEEV-SSIPGVDIIIGTTERNRIVELCE 112

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
                K+ ++   S++   E  +I     N      A++ +Q+GC+++CT+C++P+ RG 
Sbjct: 113 EFSNNKKQINIVRSLKSDHEFQTINTSKEN--DMTRAYIKVQDGCNRYCTYCIIPFARGN 170

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
             SRS+   ++EARKL   G  EI L G ++ ++   G D  K    DL+ +++ I G+ 
Sbjct: 171 IRSRSIEDSMNEARKLAKAGYKEIILTGIHIGSY---GYDIGKERLIDLIENIASIDGIE 227

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R ++  PR ++D  +K     + L  + HL +QSGS++ILK MNR++T  EY      
Sbjct: 228 RIRLSSIEPRTITDDFMKRVVATNKLCDHFHLSLQSGSNKILKEMNRKYTREEYFDKTQI 287

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           IRS  P   +++D IVGFPGETDDDF  + DL+ K+ +++   FKYS R GT  + M  Q
Sbjct: 288 IRSYMPYAGLTTDVIVGFPGETDDDFLDSYDLIKKVEFSKVHVFKYSKRDGTVAAKMKNQ 347

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           +D N+K +R   L     E    F++  +  I  VL E+        VG +        N
Sbjct: 348 IDGNIKNKRSSILLALSDELMKKFSEKNLNVIKSVLFEEKLVNSS-YVGYTTNYIRCFTN 406

Query: 442 SKNHNIGDIIKVRITDVK 459
           SK      I  V I +++
Sbjct: 407 SKEDLKNKIKNVNIVNIE 424


>gi|241663178|ref|YP_002981538.1| ribosomal protein S12 methylthiotransferase [Ralstonia pickettii
           12D]
 gi|240865205|gb|ACS62866.1| MiaB-like tRNA modifying enzyme YliG [Ralstonia pickettii 12D]
          Length = 453

 Score =  361 bits (927), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 119/475 (25%), Positives = 204/475 (42%), Gaps = 46/475 (9%)

Query: 17  IVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA 76
           + D      +    S GC   + DS ++     ++GYE   +   ADL+V+NTC   ++A
Sbjct: 1   MSDVSTQSPKVGFVSLGCPKALVDSEQIITQLRAEGYEISGTYGGADLVVVNTCGFIDEA 60

Query: 77  AEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQ----AEGEEILRRSPIVNVVVGPQT 132
            ++    +G                 V+V GC+      A  + I    P V  V GP  
Sbjct: 61  VQESLDAIGEALAENGK---------VIVTGCLGAKKDAAGQDIITSVHPKVLAVTGPHA 111

Query: 133 YYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTF 192
              + E +                 D F  L +   G        A+L I EGC+  C+F
Sbjct: 112 LGEVMEAVHTHLP---------KPHDPFIDL-VPPQGIKLTPKHYAYLKISEGCNHRCSF 161

Query: 193 CVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--K 244
           C++P  RG  +SR +++V+ EA  L+  GV E+ ++ Q+ +A+      R    +G   K
Sbjct: 162 CIIPSMRGDLVSRPVAEVMLEAENLLKAGVKELLVISQDTSAYGVDVKFRMGFWNGRPLK 221

Query: 245 CTFSDLLYSLSEI----KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300
              ++L+ +L E+       VRL Y   +P       + A G    ++PYL +P+Q    
Sbjct: 222 TRMTELVGALGELAAQYGAWVRLHYVYPYPSVDEVMPLMAEG---KVLPYLDVPLQHAHP 278

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
            +LK M R   A +    I   R V P++ I S FI GFPGET+++F+  +D + +    
Sbjct: 279 DVLKRMKRPANAEKTLDRIRAWREVCPELTIRSTFIAGFPGETEEEFQTLLDFIAEAELD 338

Query: 361 QAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
           +   F YSP  G   +++   + + V+ ER     +             VG+ + VL+++
Sbjct: 339 RVGCFAYSPVEGATANDLPGALPDEVREERRARFMEVAERVSARRLQRKVGKSLRVLVDE 398

Query: 421 HGKEK--GKLVGRSPWLQSVVLNSKNHNI------GDIIKVRITDVKISTLYGEL 467
             ++   G+    +P +  +V  +           GD + V+IT      L+GE+
Sbjct: 399 VNQDGGIGRSSADAPEIDGLVYIAPPSKPYKRYKAGDFVSVKITGADGHDLWGEV 453


>gi|93006539|ref|YP_580976.1| hypothetical protein Pcryo_1715 [Psychrobacter cryohalolentis K5]
 gi|122989854|sp|Q1QA11|RIMO_PSYCK RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|92394217|gb|ABE75492.1| conserved hypothetical protein [Psychrobacter cryohalolentis K5]
          Length = 531

 Score =  361 bits (927), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 131/460 (28%), Positives = 209/460 (45%), Gaps = 34/460 (7%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
             P+  FV S GC   + DS R+       GY+  +  + ADL+V+NTC   E A ++  
Sbjct: 86  AAPKIGFV-SLGCPKALVDSERIITELSRDGYQVASDYEGADLVVVNTCGFIESAVQESL 144

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             +G   +             V+V GC+   E ++I    P V  V G   Y  +   + 
Sbjct: 145 DAIGEAISKNGK---------VIVTGCLG-KEADKIREMHPAVLAVTGAHAYDDVIRAV- 193

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
                K     D S + K +   I + G        A+L I EGC+  CTFC++P  RG 
Sbjct: 194 ALHVPKPDCGLDASYDPKID--LINEAGIKLTPSHYAYLKISEGCNHRCTFCIIPSLRGD 251

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE---------KCTFSDLLY 252
            +SR +  V++EA  L   GV E+ ++ Q+ +A  G  L  +         K  F DL  
Sbjct: 252 LVSRPIDSVMNEALALKKAGVKELLIISQDTSA-YGLDLKYKTSFWNGMPLKSKFYDLCQ 310

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
           +L+++   VRL Y   +P      +++  G+   L+PYL +P Q  S RILK+M R   +
Sbjct: 311 ALNDLGIWVRLHYVYPYPHVDK--VVELMGE-KKLLPYLDIPFQHASHRILKAMKRPAHS 367

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
                 I   R + PDI I S F+VGFPGET++DF+  +D + +    +  +F YS   G
Sbjct: 368 ENTLARIHAWREICPDIVIRSTFVVGFPGETEEDFQCLLDWLVEARLDRVGAFTYSEVEG 427

Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS 432
              +++   V E+VK ER   L    ++         +G+ + VL+++  +E+G  + RS
Sbjct: 428 AVANDLPNHVPEDVKQERYERLMTLQQDISAQKLQEKIGKTLMVLVDEIDREEGVAICRS 487

Query: 433 ----PWLQSVVLNSK---NHNIGDIIKVRITDVKISTLYG 465
               P +   V       +  +G  + V I D     L+ 
Sbjct: 488 YADAPEIDGHVYVDDIDAHVKVGQFLTVTIDDASEYDLFA 527


>gi|238917088|ref|YP_002930605.1| 2-alkenal reductase [Eubacterium eligens ATCC 27750]
 gi|238872448|gb|ACR72158.1| 2-alkenal reductase [Eubacterium eligens ATCC 27750]
          Length = 446

 Score =  361 bits (927), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 130/436 (29%), Positives = 228/436 (52%), Gaps = 19/436 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDD--ADLIVLNTCHIREKAAEKVYS 82
           ++  + S GC++N Y++  ME M   +GYE V   +D  AD+ ++NTC +   A  K   
Sbjct: 6   KKVAIHSLGCKVNSYEAESMEIMLRDEGYEIVPFSEDVQADIYIINTCSVTNIADRKSRQ 65

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            L + +       K   + +VV AGC  QA+ + + ++   V++++G      + E L  
Sbjct: 66  MLHKAK-------KMNPEAVVVAAGCYVQADPDGV-KKDECVDIILGNNMKISIVEALND 117

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
              G         + DK++    +           A++ IQ+GC++FC++C++PY RG  
Sbjct: 118 YFGGADKTSYLVDINDKYQEYESLKIN-QTGEHTRAYIKIQDGCNQFCSYCIIPYVRGRV 176

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR    +V+E + L   GV E+ L G +++++   G D E  +  +L+ ++ EI+G+ R
Sbjct: 177 RSRKPEDIVNEVKTLAATGVKEVVLTGIHISSY---GTDLENISLIELIEAIHEIEGIKR 233

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R  +  PR +++   K    L+ + P+ HL +QSG D+ LK+MNR++   EY +   ++
Sbjct: 234 IRLGSLEPRIITEEFAKRIAGLEKICPHFHLSLQSGCDKTLKAMNRKYNTEEYYEGCVKL 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R V  + AI++D IVGFPGET++DF  T   ++K+ + +   FKYS R GT    M EQV
Sbjct: 294 REVFENPAITTDVIVGFPGETEEDFLETRKFLEKVHFYEMHIFKYSRRKGTVADKMKEQV 353

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK--LVGRSPWLQSVVL 440
            + VK+ER   L    + Q + +    +G+ +EVLIE+  +  G+    G +     V +
Sbjct: 354 ADTVKSERSAVLLALEKAQSLEYRKMYIGKRLEVLIEELTEIDGRSYYTGYTKNYIRVAI 413

Query: 441 NSKNHN---IGDIIKV 453
            +       + DI + 
Sbjct: 414 AADEFKDNPVNDIYEC 429


>gi|251772238|gb|EES52808.1| RNA modification enzyme, MiaB family [Leptospirillum
           ferrodiazotrophum]
          Length = 456

 Score =  361 bits (927), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 116/448 (25%), Positives = 202/448 (45%), Gaps = 20/448 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +   + S GC  N  D+ RM     S+GY+ V  +++A+++++NTC     A  +    L
Sbjct: 11  KTVGIVSLGCPKNSSDTERMISDLSSRGYKVVPDLEEAEILLVNTCSFVTDARRESVDTL 70

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             +   K      G    +V AGC+     +++    P V++ +     +RL E+L++  
Sbjct: 71  LELSRYKEE----GKARYLVGAGCLVSRYRDQMGELIPEVDLALTTFEEHRLGEILDQ-- 124

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
                V    S             G        A++ + EGCD  CTFC +P  RG ++S
Sbjct: 125 -----VGGSTSSPLSIRPALFPLPGARLTPPHRAYVKVSEGCDHPCTFCSIPLARGGQVS 179

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R+   ++ E R L   G  E+TL+ Q++    G+ L G     SDLL  +    G+  +R
Sbjct: 180 RAPESILAEVRDLASRGTREVTLIAQDLT-RYGQDL-GLSDGLSDLLERIDAEGGIPWVR 237

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
              ++P  ++D L+        ++PYL +P+Q     +L +M R       ++++DR+RS
Sbjct: 238 LLYAYPTLVTDRLLSVMAKSRTVLPYLDIPLQHVEASVLTAMKRPGNVEFMKRLVDRVRS 297

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             P + + + FI GFPGET+ +F + MD V    +     F +S   GTP  ++ +QV  
Sbjct: 298 AIPGVTLRTTFITGFPGETEREFESLMDFVAWARFDHVGVFAFSREEGTPSYSLPDQVPH 357

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQS------ 437
            ++  R   L        +  N A  G +  +LIE   ++    L GR+  +        
Sbjct: 358 RIRMRRRKDLMALCAGISLEKNKALEGTVQPILIEGLSEQSDLVLSGRTRGMAPDGIDGE 417

Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYG 465
           V++ S   + G+I+  RI   +   L  
Sbjct: 418 VLVLSGQGSPGEIVDCRIVKARPFDLEA 445


>gi|227824689|ref|ZP_03989521.1| RNA modification enzyme [Acidaminococcus sp. D21]
 gi|226905188|gb|EEH91106.1| RNA modification enzyme [Acidaminococcus sp. D21]
          Length = 435

 Score =  361 bits (927), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 141/440 (32%), Positives = 224/440 (50%), Gaps = 21/440 (4%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           +       + GC++N  D+  ME +F   GYE V   + +D+ ++NTC +      K   
Sbjct: 1   MKHSISFYTLGCKVNQSDTASMEKLFREAGYEIVPFGEASDICLINTCVVTNMGQGKSRR 60

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            + R        IK     L+VV GC  Q   EE+      V+++VG +   R+ EL+E 
Sbjct: 61  MIRR-------TIKRDPKPLIVVTGCYPQTAPEEVAA-LEGVDLLVGNRDRARIVELVEE 112

Query: 143 ARFGKRVVDT----DYSVEDKFERLS-IVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197
               +         D  V  +FE L+  VD   +R     AFL IQEGCD++C++C++PY
Sbjct: 113 RLGERDAAPVNDVLDLPVGSEFEDLAASVDDSRDR-----AFLKIQEGCDQYCSYCIIPY 167

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257
            RG   SR LS +  E   L + G  E+ LLG ++  +  +  +GE+   SD + +   +
Sbjct: 168 ARGHLRSRPLSSIRREVEHLTEEGYKEVVLLGIHLGCYGKETANGER--LSDAVSAALSV 225

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
             L RLR  +    ++   L++   +      +LHLP+QSG D+ILK+MNR +    +++
Sbjct: 226 PALCRLRLGSLESVEVQPELLRLMQEDPRFCCHLHLPLQSGCDKILKAMNRPYDTARFKE 285

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
           +IDRIR+  PD+AI++D IVGFPGET+ DF  T+   +  G+A+   F YS R GTP + 
Sbjct: 286 LIDRIRAAVPDVAITTDIIVGFPGETEADFAQTLTFAEACGFAKIHIFPYSKRKGTPAAE 345

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQS 437
             +Q+    K +R+  L+   R+    F    +G+   VL E+ G++ G   G +P    
Sbjct: 346 RKDQLSNKEKEDRVHRLEAVDRKGNEIFRKTLIGRQYPVLWEQIGRK-GLWEGLTPNYVR 404

Query: 438 VVLNSKNHNIGDIIKVRITD 457
           V L S+    G +  V +T 
Sbjct: 405 VYLKSEEDLTGTLTTVAVTG 424


>gi|315223707|ref|ZP_07865557.1| 2-methylthioadenine synthetase [Capnocytophaga ochracea F0287]
 gi|314946282|gb|EFS98281.1| 2-methylthioadenine synthetase [Capnocytophaga ochracea F0287]
          Length = 437

 Score =  361 bits (926), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 125/439 (28%), Positives = 214/439 (48%), Gaps = 17/439 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++    + GC++N  ++  +   F  +GY+RV+  + AD+ V+NTC + E A +      
Sbjct: 2   KKVAFYTLGCKLNFSETSTIARSFEEEGYQRVDFDEPADIYVINTCSVTENADK------ 55

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            + + +    +K      +   GC AQ + EE+      V++V+G +  + + + L+   
Sbjct: 56  -QFKQIVRKALKTNPKAFLAAVGCYAQLKPEELASVD-GVDLVLGAKEKFNITQYLDDLT 113

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
                V     + +         G Y+      AFL +Q+GCD  CT+C +P  RGI  S
Sbjct: 114 KNNEGVVHSCEISET----DFYVGSYSIGDRTRAFLKVQDGCDYKCTYCTIPMARGISRS 169

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK---CTFSDLLYSLSEIKGLV 261
            ++  ++  A+K+ D G+ EI L G N+    GKG  G K    TF +L+ +L +++G+ 
Sbjct: 170 DTIENIIANAKKISDKGIKEIVLTGVNIG-DYGKGEFGNKKHEHTFLELVQALDKVEGIE 228

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           RLR ++  P  + D  I      +  +P+ H+P+QSGS+ ILK M RR+    Y   + +
Sbjct: 229 RLRISSIEPNLIKDETIDFIAQSNSFVPHFHIPLQSGSNEILKKMKRRYLRELYVSRVAK 288

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           IR V PD  I  D IVGFPGETD+ F  T   ++ +  +    F YS R  T    M   
Sbjct: 289 IREVMPDACIGVDVIVGFPGETDEHFLETYYFLNDLDISYLHVFTYSERDNTEAVLMDGV 348

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           V + V+A+R   L+    +++ +F  + +G+   VL E   K+ G + G +     V   
Sbjct: 349 VPDAVRAKRSKMLRGLSAKKRNAFYTSQLGKEKTVLFESDNKQ-GYIHGFTENYVKVKAP 407

Query: 442 SKNHNIGDIIKVRITDVKI 460
                +  + KV++T +  
Sbjct: 408 WDPSLVNTLHKVKLTKIDA 426


>gi|90022971|ref|YP_528798.1| hypothetical protein Sde_3331 [Saccharophagus degradans 2-40]
 gi|123395607|sp|Q21FE3|RIMO_SACD2 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|89952571|gb|ABD82586.1| conserved hypothetical protein [Saccharophagus degradans 2-40]
          Length = 479

 Score =  361 bits (926), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 118/473 (24%), Positives = 200/473 (42%), Gaps = 35/473 (7%)

Query: 10  VAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNT 69
                +       +  R    S GC   + DS R+       GY+ V S +DAD++V+NT
Sbjct: 24  TPEPNAVAAPSSELGNRVGFVSLGCPKALVDSERILTQLKLDGYDVVPSYNDADVVVVNT 83

Query: 70  CHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEE-ILRRSPIVNVVV 128
           C   + A ++    +G                 V+V GC+ +    + I    P V  V 
Sbjct: 84  CGFIDSAKQESLDAIGEAMKENGK---------VIVTGCMGKGNDAQVIKETYPNVLSVT 134

Query: 129 GPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
           GP  Y  +   +      K+  +    +        +   G        A+L I EGC+ 
Sbjct: 135 GPAAYEEVMGAVHGYIPPKKEHNPLIDL--------VPPQGVKLTPRHYAYLKISEGCNH 186

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE----- 243
            CTFC++P  RG  +SR +  V+ EA +L+  G  EI ++ Q+ +A  G  +        
Sbjct: 187 RCTFCIIPDMRGDLVSRPIGDVLGEAERLVAAGTKEILVISQDTSA-YGVDVKYRTGFWQ 245

Query: 244 ----KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
               K    ++  +L E+   VRL Y   +P   +   + A G    ++PYL +P Q  S
Sbjct: 246 GRPVKTRMLEMCEALGELGAWVRLHYVYPYPHVDNVIPLMAEG---KILPYLDIPFQHAS 302

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
            ++LK+M R     +  + + + R + P++ + S F+VGFPGET+ DF+  +D + +   
Sbjct: 303 PQVLKNMRRPAHQEKTLERLAKWREMCPELVLRSTFVVGFPGETEQDFQILLDWLQEAQL 362

Query: 360 AQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419
            +   F+YSP  G   + +   V + VK ER     +  +    +     VG  ++V+I+
Sbjct: 363 DRVGCFEYSPVEGAKANALPNHVPDEVKRERWERFMETQQAISAAKLKQKVGYEMDVIID 422

Query: 420 KHGKE--KGKLVGRSPWLQSVVLNSKNH--NIGDIIKVRITDVKISTLYGELV 468
               +   G+    +P +  VV  S      +G+   V IT      L G  V
Sbjct: 423 SIDGDIATGRTYADAPEIDGVVTFSGAAGMKVGEFSAVEITGSDDYDLTGIAV 475


>gi|295109586|emb|CBL23539.1| MiaB-like tRNA modifying enzyme [Ruminococcus obeum A2-162]
          Length = 438

 Score =  361 bits (926), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 133/450 (29%), Positives = 240/450 (53%), Gaps = 18/450 (4%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + ++  + + GC++N Y+   M+ +    GYE V   + AD+ ++NTC +   A  K   
Sbjct: 1   MKKKVALHNLGCKVNAYEVEAMQQLLEKAGYEIVPFTEGADVYLINTCTVTNIADRKSRQ 60

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            L + +       K   D +VV AGC AQA+ E++ +    V++++G     ++ E+LE 
Sbjct: 61  MLHKAK-------KMNPDAIVVAAGCYAQADTEKL-KEDNAVDLILGNNQKTQIVEVLEE 112

Query: 143 AR--FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
                 K+V   + +   ++E LSI          V A++ +Q+GC++FCT+C++P+ RG
Sbjct: 113 YEKEHSKQVQVIEINHTKEYEELSI----EQTAEHVRAYIKVQDGCNQFCTYCIIPFARG 168

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
              SR ++ V+ E   L   G  E+ L G +++++       E+ +   L+ ++S++ G+
Sbjct: 169 RVRSRKIADVLREVETLASKGYKEVVLTGIHLSSYGVDFPKEERESLLSLIQAVSKVAGI 228

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R  +  PR +++  ++       + P+ HL +QSG ++ LK+MNRR++A EY +  +
Sbjct: 229 QRIRLGSLEPRIITEEFLEGIVATGKVCPHFHLSLQSGCNKTLKNMNRRYSAQEYAEKCE 288

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
            IR   P  A+++D IVGFP ET++DF  + + V  I + +   FKYS R GT  + M  
Sbjct: 289 LIRKYYPAPALTTDVIVGFPMETEEDFEESYEFVKNIHFYETHIFKYSRRHGTKAAAMDG 348

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK--LVGRSPWLQSV 438
           Q+ E VKA+R   L +    +   + +A +G+ IE+L+E+  +E GK   VG S      
Sbjct: 349 QLTEAVKAQRSEKLLELHDIRAKEYEEAMIGKTIELLLEEEIEEDGKMWYVGHSREYVRA 408

Query: 439 VLNSKN-HNIGDIIKVRITD-VKISTLYGE 466
           V+     H + D+++ ++T  V    L  E
Sbjct: 409 VIEKTEVHQVNDLVEAKVTGFVTDHLLRAE 438


>gi|188585813|ref|YP_001917358.1| RNA modification enzyme, MiaB family [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179350500|gb|ACB84770.1| RNA modification enzyme, MiaB family [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 446

 Score =  361 bits (926), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 134/451 (29%), Positives = 236/451 (52%), Gaps = 21/451 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVN----SMDDADLIVLNTCHIREKAAEKVY 81
           R    ++GC++N YDS  ++++F  +G+E  +     +D+ D+ ++NTC +   A  K  
Sbjct: 6   RVKFITFGCKVNQYDSEALKELFQDRGFEISDWNPQELDNIDVAIINTCTVTHLADRKAR 65

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             + +++       +   + ++ V GC  Q + + + +    V++V G +    L EL+E
Sbjct: 66  QHIRKLK-------RRNPNCVIAVTGCYPQTDPQTV-KALEGVDIVHGIEDRSGLVELVE 117

Query: 142 RARFGKRVVDTDYSVED---KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
           +A   + +      + D   K E  ++    + +      FL IQEGCD+FC++C++PY 
Sbjct: 118 QALSKENIWQGAIHLHDSRPKGEFENLKIKNFKKHDRTRHFLKIQEGCDQFCSYCIIPYA 177

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258
           RG   SR    V+ E ++ + NG  EI L G N+ A  G+  +      + LL  +  +K
Sbjct: 178 RGHLRSRPPEDVISEIKQAVSNGFKEIVLTGINLGA-YGR-ENSNLPNLATLLDKIIHLK 235

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           G  R+R ++  P++++  L++   + + +  +LH+P+QSG + ILK+MNR ++  +YR+I
Sbjct: 236 GDYRIRLSSCEPQEITIGLLELVTNSEKICKHLHIPLQSGDNEILKAMNRDYSKEDYRKI 295

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           +   R   P IAI++D IVGFPGE+ + FR T + V KIG++    F+YSPR  TP    
Sbjct: 296 VMAAREKSPSIAITTDIIVGFPGESANHFRNTKEFVKKIGFSDIHIFQYSPRKNTPAQEF 355

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSV 438
            +QV    K  R   L +  R+    +++  + + + VL+EKH  E+    G S     V
Sbjct: 356 SDQVHSKEKKARSQELIEISRDLSRVYHEQFIDKTVPVLVEKH--EEDVASGVSDTYLKV 413

Query: 439 VLN--SKNHNIGDIIKVRITDVKISTLYGEL 467
             N  S+ +    I +V+I       +YGEL
Sbjct: 414 TFNVESEINLYNKICQVQINSADEEMVYGEL 444


>gi|257467388|ref|ZP_05631699.1| Fe-S oxidoreductase [Fusobacterium gonidiaformans ATCC 25563]
 gi|315918518|ref|ZP_07914758.1| Fe-S oxidoreductase [Fusobacterium gonidiaformans ATCC 25563]
 gi|313692393|gb|EFS29228.1| Fe-S oxidoreductase [Fusobacterium gonidiaformans ATCC 25563]
          Length = 436

 Score =  361 bits (926), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 119/441 (26%), Positives = 228/441 (51%), Gaps = 16/441 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +R    + GC++N Y+S  +++    +GYE V+    AD+ ++N+C +   A  K  + L
Sbjct: 5   KRVAFYTLGCKVNQYESESIKNQLLQKGYEEVDFESIADIYIVNSCTVTSIADRKTRNML 64

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R +       K+     V+V GC A+   +++L     ++ V+G +    + + ++   
Sbjct: 65  RRAK-------KQNPSGKVIVTGCYAETNRKDLL-EMEEIDFVIGNKDKSAVAKFVQEIH 116

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
             +RV   +   ++K  +          +    A++ IQ+GC++FC++C +P+ RG   S
Sbjct: 117 TQERVEKKESIFQEKEYQ---EYEFATFREMTRAYVKIQDGCNEFCSYCKIPFARGKSRS 173

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R   +V++E  KL+  G  EI L+G N+    GK L+G+  +F  L+  + +   L R+R
Sbjct: 174 RKQEKVLEEIDKLLMEGFQEIILIGINLG-DYGKDLEGD-TSFETLVQEILKRDSLKRVR 231

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
             + +P  ++D  I    +   +MP+LH+ +QS  D +L++M R++        +  +R 
Sbjct: 232 IGSVYPDRITDSFISLFKN-PKMMPHLHISLQSCDDTVLRNMKRKYGRELILSSLSSLRK 290

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             P +  ++D IVGFPGET++ F+ T   +++IG++    F YS R GT  S M  ++  
Sbjct: 291 EVPSMEYTADIIVGFPGETEEMFQNTYASLEEIGFSHLHIFPYSDREGTLASRMKNKLSP 350

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
            +K ER+  L+   ++ +     A +G+ IEVLIE+  ++ G   G SP    V +  ++
Sbjct: 351 EIKKERVTILENLQKKVEEDRRKAYLGKTIEVLIEE--EKDGYWWGYSPNYLRVKVKGED 408

Query: 445 HNIGDIIKVRITDVKISTLYG 465
            ++  +++V+I  V+   L  
Sbjct: 409 ISVNCLVQVKIEKVEKGVLVA 429


>gi|167569764|ref|ZP_02362638.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Burkholderia
           oklahomensis C6786]
          Length = 456

 Score =  361 bits (926), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 124/477 (25%), Positives = 208/477 (43%), Gaps = 48/477 (10%)

Query: 18  VDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA 77
           + +          S GC   + DS ++     ++GYE   + D ADL+V+NTC   ++A 
Sbjct: 1   MGKASATPTVGFVSLGCPKALVDSEQIITQLRAEGYEISGTYDGADLVVVNTCGFIDEAV 60

Query: 78  EKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEE----ILRRSPIVNVVVGPQTY 133
           ++    +G                 V+V GC+   +       I    P V  V GP   
Sbjct: 61  QESLDAIGEALAENGK---------VIVTGCLGAKKSASGSGLIEEVHPKVLAVTGPHAV 111

Query: 134 YRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC 193
             + + +                 D F  L    G     R   A+L I EGC+  C+FC
Sbjct: 112 GEVMQAVHSHLP---------KPHDPFVDLVPAAGIKLTPRHY-AYLKISEGCNHRCSFC 161

Query: 194 VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KC 245
           ++P  RG  +SR +++V+ EA  L  +GV E+ ++ Q+ +A+      R    +G   K 
Sbjct: 162 IIPSMRGDLVSRPVAEVMLEAENLFKSGVKELLVISQDTSAYGVDVKYRTGFWNGRPLKT 221

Query: 246 TFSDLLYSLSEI----KGLVRLRYTTSHPRDMSDCLIKAHGDLD-VLMPYLHLPVQSGSD 300
             ++L+ +L E+       VRL Y   +P       + A G L   ++PYL +P Q    
Sbjct: 222 RMTELVGALGELAAQYGAWVRLHYVYPYPHVDEIIPMMAEGPLKGHVLPYLDVPFQHAHP 281

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
            +LK M R   A +  + + + R + PD+ I S FI GFPGET+  F   +D + +    
Sbjct: 282 DVLKRMKRPANAEKVLERVQKWREICPDLTIRSTFIAGFPGETEAQFETLLDFIREAELD 341

Query: 361 QAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
           +   F YSP  G   + +   + ++V+  R     +       +  +  VG+ ++VLI++
Sbjct: 342 RVGCFAYSPVEGASANELDGALPDDVREARRARFMEVAEAVSAARIERKVGKTLKVLIDE 401

Query: 421 HGKEKGKLVGRS----PWLQSVVLN------SKNHNIGDIIKVRITDVKISTLYGEL 467
              E G  +GR+    P +  VV        SK + +GD + V+IT      L+GE+
Sbjct: 402 VNAEGG--IGRTAADAPEIDGVVYVEPATKASKRYKVGDFVSVKITGADGHDLWGEV 456


>gi|323449468|gb|EGB05356.1| hypothetical protein AURANDRAFT_31065 [Aureococcus anophagefferens]
          Length = 540

 Score =  360 bits (925), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 164/479 (34%), Positives = 239/479 (49%), Gaps = 45/479 (9%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL-- 84
           FF+++ GCQMNV DS  +  +    GY    S   AD+++LNTC IR+KA  KV++ L  
Sbjct: 39  FFIETRGCQMNVSDSEVVRSLLLDGGYGEATSAAAADVVLLNTCAIRDKAEAKVWTRLRD 98

Query: 85  --GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
             GR  +             V V GC+A+   EE L  + + +VVVGP  Y  LP LL  
Sbjct: 99  LRGRAPHGVKLAAHRRPRQTVAVLGCMAERV-EEGLFENGLADVVVGPDAYRELPRLLGN 157

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
              G ++      VED  E          R     AF+++Q GC+  C +C+VPYTRG E
Sbjct: 158 VGSGPQMDTKLSLVEDYGEVFPTRADPTMR---HGAFVSVQRGCNNACAYCIVPYTRGRE 214

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG------------------------- 237
            SR+++ V+DE   L D GV EITLLGQNVN++                           
Sbjct: 215 RSRAVTTVLDEVAALYDAGVREITLLGQNVNSYHDAKTASAWGLPREYSDGFVPFVKSAK 274

Query: 238 KGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQS 297
           +    +   F++LL +++E     R+R+T+ HP+D  D L++A  D   +   LHLP QS
Sbjct: 275 RDGMADGVRFAELLVAVAEAAPDARIRFTSPHPKDFPDALLRAVADTPNVAKQLHLPAQS 334

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
           GSD +L+SM R +T   YR ++DR R   P +A+SSDFI GF GE++ D  AT+ L++ I
Sbjct: 335 GSDAVLRSMRRGYTDDAYRALVDRARQTIPGVALSSDFIAGFCGESEADHDATVALIEDI 394

Query: 358 GYAQAFSFKYSPRLGTPG-SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEV 416
            Y  AF F YS R  TP    + + V  +VK  RL  +    R  +   +   VG+   V
Sbjct: 395 RYDMAFLFAYSSRDRTPAQRRLDDDVPADVKNRRLNEIIAAFRAGRDELSHEAVGETHLV 454

Query: 417 LIEKHGK------EKGKLVGRSPWLQSVVL-----NSKNHNIGDIIKVRITDVKISTLY 464
           L+E   K      +   + GR+   + +V      +      GD   V +  V+ +TL+
Sbjct: 455 LVEGAPKRAPAGADGTFVTGRNDGYRKIVFPDALPDGTALAEGDFCHVYVDRVEGATLF 513


>gi|83745890|ref|ZP_00942947.1| Fe-S OXIDOREDUCTASE [Ralstonia solanacearum UW551]
 gi|83727580|gb|EAP74701.1| Fe-S OXIDOREDUCTASE [Ralstonia solanacearum UW551]
          Length = 462

 Score =  360 bits (925), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 120/477 (25%), Positives = 205/477 (42%), Gaps = 46/477 (9%)

Query: 15  SQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIRE 74
           S+   Q     R    S GC   + DS ++     ++GYE   +   ADL+V+NTC   +
Sbjct: 8   SESKTQADHNPRVGFVSLGCPKALVDSEQIITQLRAEGYEISGTYGGADLVVVNTCGFID 67

Query: 75  KAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAE----GEEILRRSPIVNVVVGP 130
           +A ++    +G                 V+V GC+   +     + I    P V  V GP
Sbjct: 68  EAVQESLDAIGEALAENGK---------VIVTGCLGAKKDATGNDIITSVHPKVLAVTGP 118

Query: 131 QTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190
                + E +                 D F  L +   G        A+L I EGC+  C
Sbjct: 119 HALGEVMEAVHTHLP---------KPHDPFIDL-VPPQGIKLTPKHYAYLKISEGCNHRC 168

Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE- 243
           +FC++P  RG  +SR +++V+ EA  L+  GV E+ ++ Q+ +A+      R    +G  
Sbjct: 169 SFCIIPSMRGDLVSRPVAEVMLEAENLLKAGVKELLVISQDTSAYGVDVKFRTGFWNGRP 228

Query: 244 -KCTFSDLLYSLSEI----KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
            K   ++L+ +L E+       VRL Y   +P       + A G    ++PYL +P+Q  
Sbjct: 229 LKTRMTELVGALGELAAQYGAWVRLHYVYPYPSVDEVMPLMAEG---KVLPYLDVPLQHA 285

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
              +LK M R   A +    I   R V P++ I S FI GFPGET+++F+  +D + +  
Sbjct: 286 HPDVLKRMKRPANAEKTLDRIRAWREVCPELTIRSTFIAGFPGETEEEFQTLLDFIGEAE 345

Query: 359 YAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI 418
             +   F YSP  G   +++   + + V+ ER     +             VG+ + VL+
Sbjct: 346 LDRVGCFAYSPVEGATANDLPGALPDEVREERRARFMEVAERVSARRLQRKVGKTLRVLV 405

Query: 419 EKHGKEK--GKLVGRSPWLQSVVLNSKNHNI------GDIIKVRITDVKISTLYGEL 467
           ++  ++   G+    +P +  +V  +           GD + V+IT      L+GE+
Sbjct: 406 DEVNQDGGIGRSSADAPEIDGLVYIAPPSKPYKRYKTGDFVSVKITGADGHDLWGEV 462


>gi|332292576|ref|YP_004431185.1| MiaB-like tRNA modifying enzyme YliG [Krokinobacter diaphorus
           4H-3-7-5]
 gi|332170662|gb|AEE19917.1| MiaB-like tRNA modifying enzyme YliG [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 477

 Score =  360 bits (925), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 122/461 (26%), Positives = 214/461 (46%), Gaps = 33/461 (7%)

Query: 16  QIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREK 75
            +  + +   +  V + GC  NVYDS  +     +   +  +  ++ +++V+NTC   + 
Sbjct: 27  AMRTKSLKKNKINVVTLGCSKNVYDSEVLMGQLKANEMDVAH-EEEGNIVVINTCGFIDN 85

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135
           A E+  + +      K      G    V V GC+++    ++ +  P V+   G      
Sbjct: 86  AKEESVNTILEYVKQKEE----GEVDKVFVTGCLSERYKPDLQKEIPDVDQYFGT---TE 138

Query: 136 LPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
           LP LL       + +  DY  E   ER++     Y       A+L I EGCD+ C+FC +
Sbjct: 139 LPGLL-------KALGADYKHELIGERITTTPKNY-------AYLKIAEGCDRPCSFCAI 184

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
           P  RG   S+S+  +V EA+KL  NGV E+ L+ Q++  + G  L  +K   ++LL +L 
Sbjct: 185 PLMRGKHKSKSIEHLVIEAKKLAANGVTELILIAQDLT-YYGLDLY-KKRNLAELLENLV 242

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
           +++G+  +R   + P      ++        +  Y+ +P+Q  +D ILKSM R  T  + 
Sbjct: 243 QVEGIEWIRLHYAFPSGFPVDVLDVMNREPKVCNYIDIPLQHIADHILKSMRRGTTMEKT 302

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
             ++DR R   P + I +  IVG+PGET++DF+     V    + +   F YS    T  
Sbjct: 303 NALLDRFRESVPGMTIRTTLIVGYPGETEEDFQLMKQWVKDQRFERLGCFTYSHEENTHA 362

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS--- 432
            N+ + V E VK +R   + +   +     N   +G+  ++++++  KE    +GR+   
Sbjct: 363 FNLEDDVPEEVKMDRANQIMEIQSQISWELNQQKIGKEFKIVVDR--KEGNYFIGRTEFD 420

Query: 433 -PWLQSVVLNSKN---HNIGDIIKVRITDVKISTLYGELVV 469
            P + + VL          GD   V IT+ +   LY E +V
Sbjct: 421 SPDVDNEVLVDATKFYLKTGDYAMVTITEAEDFDLYAEPLV 461


>gi|168179386|ref|ZP_02614050.1| RNA modification enzyme, MiaB family [Clostridium botulinum NCTC
           2916]
 gi|182669715|gb|EDT81691.1| RNA modification enzyme, MiaB family [Clostridium botulinum NCTC
           2916]
          Length = 432

 Score =  360 bits (925), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 133/444 (29%), Positives = 232/444 (52%), Gaps = 16/444 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    + GC++NVY++  M + F  QGYE V+  + AD+ V+NTC +     +K    + 
Sbjct: 2   KVAFSTLGCRVNVYETEAMTEKFIKQGYEIVDFNEVADVYVINTCTVTNMGDKKSRQMIS 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R R       ++    ++ V GC +Q   EE+  +   V+VV+G +    +   + RA  
Sbjct: 62  RGR-------RQNSKAIIAVVGCYSQIAPEEV-SKIDGVDVVLGTRNKGDIVYWVNRAME 113

Query: 146 GKRVVDTDYSV--EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            K  V     V    +FE L+I +     +    AFL IQ+GC++FC++C++P+ RG   
Sbjct: 114 EKNQVIEVKDVLRNKEFEELNIEEY----RDKTRAFLKIQDGCNRFCSYCLIPFARGAVC 169

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           S+   ++++E +KL  +G  EI L G ++ A  G  L+G K   + +L  + +++G+ R+
Sbjct: 170 SKKPEKIMEEVKKLSKHGFKEIILSGIDI-ASYGFDLEG-KYNLTSILEEIDKVEGIERI 227

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R  +  P   ++  I     L    P+ HL +QSG +  LK MNR++T  +Y++I+  +R
Sbjct: 228 RIGSIDPTFFTEEEIIRISKLKRFCPHFHLSLQSGCNETLKRMNRKYTVEQYKEIVHNLR 287

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           +    ++I++D IVGFPGET+++F  T + +  I  ++   FK+SPR GT    M  QVD
Sbjct: 288 TNIESVSITTDIIVGFPGETEEEFNKTYEFLRDIKLSKMHVFKFSPRKGTRAEEMKNQVD 347

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
             +K ER   +    ++ +  F +  + + + VL E+  KEKG   G +P    +   S 
Sbjct: 348 GKIKEERSNKIINLDKDLEKEFMNKFIEKEMPVLYEQETKEKGIFEGYTPNYIKIYSKSS 407

Query: 444 NHNIGDIIKVRITDVKISTLYGEL 467
               G+II   + +V    + GE+
Sbjct: 408 KDITGEIINTTLKEVSKDFIKGEI 431


>gi|167630503|ref|YP_001681002.1| miab-like tRNA modifying enzyme [Heliobacterium modesticaldum Ice1]
 gi|167593243|gb|ABZ84991.1| miab-like tRNA modifying enzyme [Heliobacterium modesticaldum Ice1]
          Length = 446

 Score =  360 bits (925), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 131/420 (31%), Positives = 206/420 (49%), Gaps = 21/420 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
                + GC++N  ++  +  MF ++GY  V     AD+ V+NTC +   +  K    + 
Sbjct: 7   TAAFHTLGCKVNQGETDAIAGMFKARGYAIVPFDAPADVYVVNTCTVTHLSDRKSRQAIR 66

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           +         ++  D +VVV GC AQ   +E+ +    V++VVG      + +L+E  R 
Sbjct: 67  KAN-------RQNPDAVVVVTGCYAQTAADEV-QAIEGVDIVVGTDRRSAIVDLVEEHRR 118

Query: 146 GKRVVDTDYS--VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
               V+T Y     ++FE L         +    A + IQ+GCD +CT+C++PY RG   
Sbjct: 119 SGETVNTVYDSCRIERFEELPAAPE----RSRARATIKIQDGCDLYCTYCIIPYARGPVR 174

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR +  VV+EA +L   G  EI L G ++ A  G   +      + L+  L  I GL R+
Sbjct: 175 SRRIESVVEEATRLTGEGFKEIVLSGIHLGA-YGSDFN---ADLAKLIVELCRIPGLRRI 230

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R  +  P++ +  L++A      + P+ H+P+QSGSD +L+ M RR+   ++  +  +I+
Sbjct: 231 RVGSVEPQEFTPELLEAVV-HPRVCPHFHIPLQSGSDAVLERMGRRYRRQDFLDVTRKIQ 289

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
            + P +AI+SD IVGFPGE + D+  + +L    G A    F YSPR GTP +   +Q+ 
Sbjct: 290 QMIPGVAITSDVIVGFPGEREADYLLSEELCRATGLAGLHVFPYSPRRGTPAATFPDQIP 349

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
             VK ER   L K  RE    +    VGQI EVL E+     G   G +     V     
Sbjct: 350 SAVKQERAQRLAKLARELASDYAKGFVGQIREVLAEEQV--DGVWTGHTDNYLKVFFTDP 407


>gi|52426302|ref|YP_089439.1| MiaB protein [Mannheimia succiniciproducens MBEL55E]
 gi|81386470|sp|Q65QA6|RIMO_MANSM RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|52308354|gb|AAU38854.1| MiaB protein [Mannheimia succiniciproducens MBEL55E]
          Length = 448

 Score =  360 bits (925), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 123/455 (27%), Positives = 206/455 (45%), Gaps = 40/455 (8%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
             S GC  N+ DS R+     + GY  + + ++ADL+++NTC   + A ++    +G   
Sbjct: 14  FVSLGCPKNLVDSERILTELRTDGYNIIPTYENADLVIVNTCGFIDSAVQESLEAIGEAL 73

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
                         V+V GC+  A+  +I    P V  + GP +Y  + E + +      
Sbjct: 74  EENGK---------VIVTGCLG-AKENQIREVHPKVLEITGPHSYEAVMEHVHKY----- 118

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
                   E       +   G        A+L I EGCD  CTFC++P  RG   SR ++
Sbjct: 119 ----VPRPERNPYTSLVPAQGVKLTPKHYAYLKISEGCDHKCTFCIIPSLRGDLDSRPIT 174

Query: 209 QVVDEARKLIDNGVCEITLLGQNV----------NAWRGKGLDGE--KCTFSDLLYSLSE 256
           QV+DEA++L+D+GV E+ ++ Q+           N  +    +G   K     L   L  
Sbjct: 175 QVLDEAKRLVDSGVKELLVVSQDTSAYALDQSKENQNKTVFWNGAPIKNNLITLCRQLGT 234

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           +   +RL Y   +P       + A G    ++PYL +P+Q  S ++LK+M R  +     
Sbjct: 235 LGAWIRLHYVYPYPHVDDLIPLMAEG---KILPYLDIPLQHASPKVLKAMKRPGSVERVL 291

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
           + I + R + P++ + S FIVGFPGET++DF+  +D + +    +   FK+SP  G   +
Sbjct: 292 ERIQKWREICPELTLRSTFIVGFPGETEEDFQMLLDFLQEAQLDRVGCFKFSPVEGAVAT 351

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEV--LIEKHGKEKGKLVGRSPW 434
           +M +QV E VK +R     +  ++         +G+ + V           G+ +  +P 
Sbjct: 352 DMADQVPEEVKEQRFQRFMELQQQISAQRLQQKIGKTLPVIIDDIDEDGIIGRSMADAPE 411

Query: 435 LQSVVLNSKNH----NIGDIIKVRITDVKISTLYG 465
           +  VV           IGDII+V IT+     L+G
Sbjct: 412 IDGVVYVDNRSESAVKIGDIIQVAITNADEYDLWG 446


>gi|115525046|ref|YP_781957.1| hypothetical protein RPE_3040 [Rhodopseudomonas palustris BisA53]
 gi|122295815|sp|Q07M57|RIMO_RHOP5 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|115518993|gb|ABJ06977.1| MiaB-like tRNA modifying enzyme YliG [Rhodopseudomonas palustris
           BisA53]
          Length = 441

 Score =  360 bits (925), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 124/463 (26%), Positives = 207/463 (44%), Gaps = 38/463 (8%)

Query: 18  VDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA 77
           ++Q   P+  FV S GC   + DS R+     ++GYE     D AD++++NTC   + A 
Sbjct: 1   MEQAPAPKISFV-SLGCPKALVDSERIITRLRAEGYELARKHDGADIVIVNTCGFLDSAK 59

Query: 78  EKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLP 137
           ++    +G              +  V+V GC+  AE E+I    P V  + GPQ Y  + 
Sbjct: 60  QESLGAIGEA---------MAENGKVIVTGCMG-AEPEQIEAAYPNVLSITGPQQYESVL 109

Query: 138 ELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197
           E + RA                     +   G        A+L I EGC+  C+FC++P 
Sbjct: 110 EAVHRAL----------PPIHNPHLDLMPPQGIKLTPRHYAYLKISEGCNNRCSFCIIPK 159

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE---------KCTFS 248
            RG  +SR  ++V+ EA +L+  GV E+ ++ Q+ +A  G  L            +  F 
Sbjct: 160 LRGDLVSRPAAEVLREAEQLVKAGVKELLVVSQDTSA-YGVDLKYAESQWQDRAVRARFY 218

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
           DL   L  +   VRL+Y   +P      +I+       ++PYL +P Q  +  +L  M R
Sbjct: 219 DLAKELGSLGAWVRLQYVYPYPHVD--EVIELMAK-GAVLPYLDIPFQHAASSVLTRMKR 275

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
                +    I R R   PD+A+ S FIVGFPGET+ +F   +D +++    +  +FKY 
Sbjct: 276 PAAQDKTLARIKRWRETCPDLALRSTFIVGFPGETEQEFAELLDWLEEAEIDRLGAFKYE 335

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE--KG 426
           P  G   + + +Q+   VK +R   L  + ++         VG   +V+I++ G    KG
Sbjct: 336 PVQGAASNALPDQIPAEVKQQRWDALMARQQKISARRLKRKVGTRQQVIIDEAGPNGAKG 395

Query: 427 KLVGRSPWLQSVVLNSK--NHNIGDIIKVRITDVKISTLYGEL 467
           +    +P +   V  S      +G+++  +I       L+G +
Sbjct: 396 RSKADAPQIDGHVYLSSRRPLRVGELVTAKIDRADAYDLHGTV 438


>gi|228470161|ref|ZP_04055070.1| conserved hypothetical protein [Porphyromonas uenonis 60-3]
 gi|228308299|gb|EEK17154.1| conserved hypothetical protein [Porphyromonas uenonis 60-3]
          Length = 443

 Score =  360 bits (925), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 118/453 (26%), Positives = 203/453 (44%), Gaps = 28/453 (6%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDD--ADLIVLNTCHIREKAAEK 79
           ++  +  V S GC  N+ DS  +       GY   +  ++   ++ V+NTC   + A E+
Sbjct: 1   MIANQIDVISLGCSKNLVDSDALMRRLAQFGYTLRHDPEELTGEIAVVNTCGFIQAAQEE 60

Query: 80  VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL 139
             + +  +   K    KEG    V V GC+ +   EE+    P V+ + G   + +L   
Sbjct: 61  SINLILSLIEAK----KEGRIRSVYVMGCLGERFREELTAELPEVDKIYGKYDWKQLISD 116

Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           L  A              D    LS      +      +++ I EGCD+ C++C +P   
Sbjct: 117 LGPALSA-----------DSATPLSYRTPPPSVTPRHYSYIKISEGCDRTCSYCAIPLIT 165

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G   SR + ++V E    +  G  E  ++ Q+   + G  L  E+   + LL  L+++ G
Sbjct: 166 GRHHSRPMEEIVREVEGRVSAGCREFQIIAQDST-YYGVDLYQEQA-IAPLLDRLAQVNG 223

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           +  LR   ++P      L+      D +  YL L +Q  S+ +L+ M R+ T  E   ++
Sbjct: 224 VHWLRLHYAYPNHFPLALLDVMAQHDNICKYLDLALQHSSNHMLQLMRRQITREETVALL 283

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
           +RIR   P IA+ +  +VG PGETD+DF   +D V ++ + +  +F+YS   GT      
Sbjct: 284 ERIREQVPGIALRTTMMVGHPGETDEDFADLLDFVSQMRFERLGAFQYSHEEGTYAYKHY 343

Query: 380 -EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PW 434
            + V   VK ER   L         S N   VG  +EV++++  +E+G  VGR+    P 
Sbjct: 344 QDDVPPEVKQERYDALMSLQANISASVNSRRVGTSLEVIVDR--EEEGYYVGRTQYDSPE 401

Query: 435 LQSVVL--NSKNHNIGDIIKVRITDVKISTLYG 465
           +   V+  + +  ++G   +  IT V+   L  
Sbjct: 402 VDGEVILSSDRPLHVGSFYRAEITGVEEYDLIA 434


>gi|207743025|ref|YP_002259417.1| 2-methylthioadenine synthetase protein [Ralstonia solanacearum
           IPO1609]
 gi|206594422|emb|CAQ61349.1| 2-methylthioadenine synthetase protein [Ralstonia solanacearum
           IPO1609]
          Length = 459

 Score =  360 bits (924), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 120/477 (25%), Positives = 205/477 (42%), Gaps = 46/477 (9%)

Query: 15  SQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIRE 74
           S+   Q     R    S GC   + DS ++     ++GYE   +   ADL+V+NTC   +
Sbjct: 5   SESKTQADHNPRVGFVSLGCPKALVDSEQIITQLRAEGYEISGTYGGADLVVVNTCGFID 64

Query: 75  KAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAE----GEEILRRSPIVNVVVGP 130
           +A ++    +G                 V+V GC+   +     + I    P V  V GP
Sbjct: 65  EAVQESLDAIGEALAENGK---------VIVTGCLGAKKDATGNDIITSVHPKVLAVTGP 115

Query: 131 QTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190
                + E +                 D F  L +   G        A+L I EGC+  C
Sbjct: 116 HALGEVMEAVHTHLP---------KPHDPFIDL-VPPQGIKLTPKHYAYLKISEGCNHRC 165

Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE- 243
           +FC++P  RG  +SR +++V+ EA  L+  GV E+ ++ Q+ +A+      R    +G  
Sbjct: 166 SFCIIPSMRGDLVSRPVAEVMLEAENLLKAGVKELLVISQDTSAYGVDVKFRTGFWNGRP 225

Query: 244 -KCTFSDLLYSLSEI----KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
            K   ++L+ +L E+       VRL Y   +P       + A G    ++PYL +P+Q  
Sbjct: 226 LKTRMTELVGALGELAAQYGAWVRLHYVYPYPSVDEVMPLMAEG---KVLPYLDVPLQHA 282

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
              +LK M R   A +    I   R V P++ I S FI GFPGET+++F+  +D + +  
Sbjct: 283 HPDVLKRMKRPANAEKTLDRIRAWREVCPELTIRSTFIAGFPGETEEEFQTLLDFIGEAE 342

Query: 359 YAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI 418
             +   F YSP  G   +++   + + V+ ER     +             VG+ + VL+
Sbjct: 343 LDRVGCFAYSPVEGATANDLPGALPDEVREERRARFMEVAERVSARRLQRKVGKTLRVLV 402

Query: 419 EKHGKEK--GKLVGRSPWLQSVVLNSKNHNI------GDIIKVRITDVKISTLYGEL 467
           ++  ++   G+    +P +  +V  +           GD + V+IT      L+GE+
Sbjct: 403 DEVNQDGGIGRSSADAPEIDGLVYIAPPSKPYKRYKTGDFVSVKITGADGHDLWGEV 459


>gi|302879309|ref|YP_003847873.1| MiaB-like tRNA modifying enzyme YliG [Gallionella capsiferriformans
           ES-2]
 gi|302582098|gb|ADL56109.1| MiaB-like tRNA modifying enzyme YliG [Gallionella capsiferriformans
           ES-2]
          Length = 438

 Score =  360 bits (924), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 125/455 (27%), Positives = 208/455 (45%), Gaps = 35/455 (7%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC     DS  +     ++GY   ++  DADL+V+NTC   + A E+    +G
Sbjct: 7   KVGFVSLGCPKATVDSEHILTRLRAEGYIISDTYKDADLVVVNTCGFIDSAVEESLDAIG 66

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                            V+V GC+  A+G+ + +  P V  V GP     + E + +   
Sbjct: 67  EALAENGK---------VIVTGCLG-AKGDVVKQAHPKVLAVTGPHATDEVMEAVHQHLP 116

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                       D +  L +   G        A+L I EGC+  CTFC++P  RG  +SR
Sbjct: 117 ---------KPHDPYTDL-VPPQGIRLTPKHYAYLKISEGCNHRCTFCIIPSLRGDLVSR 166

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAW-----RGKGLDGE---KCTFSDLLYSLSEI 257
            +  V+ EA  L + GV E+ ++ Q+ +A+        G  G    K   ++L  +L  +
Sbjct: 167 PVGDVMAEAESLANAGVRELLVISQDTSAYGVDVKYRTGFWGGRPLKTRMTELAVALGTL 226

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
              VRL Y   +P       + A G    ++PYL +P Q  + RILK M R   +     
Sbjct: 227 GVWVRLHYVYPYPHVDEVIPLMAQG---KILPYLDIPFQHANQRILKLMKRPGNSDNVLA 283

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
            I + R + P++ + S FIVGFPGET+++F   +D +++    +  +F YSP  G   ++
Sbjct: 284 RIKQWREICPELVLRSTFIVGFPGETEEEFEELLDFIEEAQLDRVGAFAYSPVEGATAND 343

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPWL 435
           + + V   V+ ERL  L     E         +G+ + VL+++  +E    +    +P +
Sbjct: 344 LPDHVPPEVQQERLARLMWLQEEISEEKLKRKIGKTLTVLVDEVDEEGAIARSFADAPEI 403

Query: 436 QSVVL--NSKNHNIGDIIKVRITDVKISTLYGELV 468
              V   + ++ N+GD ++V ITD     L+GELV
Sbjct: 404 DGQVYINDGQHLNVGDRVEVLITDSDTHDLWGELV 438


>gi|300727621|ref|ZP_07061010.1| ribosomal protein S12 methylthiotransferase RimO [Prevotella
           bryantii B14]
 gi|299775141|gb|EFI71744.1| ribosomal protein S12 methylthiotransferase RimO [Prevotella
           bryantii B14]
          Length = 437

 Score =  360 bits (924), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 117/450 (26%), Positives = 207/450 (46%), Gaps = 35/450 (7%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEKVYSFLGR 86
           V S GC  N+ DS  +  +F + GY+ V        ++ V+NTC   E A E+  + +  
Sbjct: 8   VVSLGCSKNLVDSETLMKLFETNGYKCVADSKNPQGEIAVINTCGFIETAKEESINTILE 67

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
               KN     G    + V GC++Q   +E+    P V+   G   Y  L + L ++   
Sbjct: 68  FVERKNE----GKLKKLFVMGCLSQRYQKELEAELPEVDKFYGKFNYKLLLQDLGKS--- 120

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
                         + ++     +       A+L I EGCD+ C +C +P   G  +SR 
Sbjct: 121 --------------DIITCDGKRHLTTPHHYAYLKIAEGCDRHCAYCAIPIMTGKHVSRP 166

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
           + +++DE + L++ GV E  ++ Q +  + G  +DG K   ++L+  +++I G+  +R  
Sbjct: 167 MQEILDEVKNLVEQGVKEFQVIAQELT-YYGIDIDG-KHHITELISKMADIPGVKWIRLH 224

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
            ++P      L+    + D +  YL + +Q  SD +L  M+R  T  E   +I  IR   
Sbjct: 225 YAYPNQFPMDLLDVIRERDNVCKYLDIALQHISDNVLSRMHRHVTKQETIDLIKAIRERV 284

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP-GSNMLEQVDEN 385
           P I I +  +VGFPGET++D++   + V    + +  +F YS   GT    +  + V ++
Sbjct: 285 PGITIRTTLLVGFPGETEEDYQELQEFVKWARFERMGAFAYSEEEGTYSAEHYEDDVPDD 344

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVV-- 439
           VK  RL  L     +         VG++++V+I++  KE    +GR+    P +   V  
Sbjct: 345 VKQHRLDELMAIQEQISTEIEAEKVGKVLKVIIDR--KEGDYYIGRTEFSSPEVDPEVLI 402

Query: 440 -LNSKNHNIGDIIKVRITDVKISTLYGELV 468
            +N +   +G   +V+I D     L G +V
Sbjct: 403 PVNERQLRVGSFYQVKIVDSSEFDLTGTVV 432


>gi|256820597|ref|YP_003141876.1| MiaB-like tRNA modifying enzyme [Capnocytophaga ochracea DSM 7271]
 gi|256582180|gb|ACU93315.1| MiaB-like tRNA modifying enzyme [Capnocytophaga ochracea DSM 7271]
          Length = 435

 Score =  360 bits (924), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 125/439 (28%), Positives = 213/439 (48%), Gaps = 17/439 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++    + GC++N  ++  +   F  +GY+RV+  D AD+ V+NTC + E A +      
Sbjct: 2   KKVAFYTLGCKLNFSETSTIARSFEEEGYQRVDFDDPADIYVINTCSVTENADK------ 55

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            + + +    +K      +   GC AQ + EE+      V++V+G +  + + + ++   
Sbjct: 56  -QFKQIVRKALKTNPKAFLAAVGCYAQLKPEELASVD-GVDLVLGAKEKFNITQYIDDLT 113

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
                V     + +         G Y+      AFL +Q+GCD  CT+C +P  RGI  S
Sbjct: 114 KNNEGVVHSCEISET----DFYVGSYSIGDRTRAFLKVQDGCDYKCTYCTIPMARGISRS 169

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK---CTFSDLLYSLSEIKGLV 261
            ++  ++  A+K+ D G+ EI L G N+    GKG  G K    TF +L+ +L +++G+ 
Sbjct: 170 DTIENIIANAKKISDKGIKEIVLTGVNIG-DYGKGEFGNKKHEHTFLELVQALDKVEGIE 228

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           RLR ++  P  + D  I         +P+ H+P+QSGS+ ILK M RR+    Y   + +
Sbjct: 229 RLRISSIEPNLIKDETIDFIAQSKSFVPHFHIPLQSGSNEILKKMKRRYLRELYVSRVAK 288

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           IR V PD  I  D IVGFPGETD+ F  T   ++ +  +    F YS R  T    M   
Sbjct: 289 IREVMPDACIGVDVIVGFPGETDEHFLETYYFLNDLDISYLHVFTYSERDNTEAVLMDGV 348

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           V + V+A+R   L+    +++ +F  + +G+   VL E   K+ G + G +     V   
Sbjct: 349 VPDAVRAKRSKMLRGLSAKKRNAFYTSQLGKEKTVLFESDNKQ-GYIHGFTENYVKVKAP 407

Query: 442 SKNHNIGDIIKVRITDVKI 460
                +  + KV++T +  
Sbjct: 408 WDPSLVNTLHKVKLTKIDA 426


>gi|167750131|ref|ZP_02422258.1| hypothetical protein EUBSIR_01100 [Eubacterium siraeum DSM 15702]
 gi|167656874|gb|EDS01004.1| hypothetical protein EUBSIR_01100 [Eubacterium siraeum DSM 15702]
          Length = 446

 Score =  360 bits (924), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 120/452 (26%), Positives = 211/452 (46%), Gaps = 20/452 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +  + S GC  N  D+  M       G++ VN    AD++++NTC   + A E+    + 
Sbjct: 6   KVGMVSLGCPKNQCDAELMLAKIAKAGFKIVNEAGLADVVIINTCGFIQSAKEEAIEEIM 65

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
              + KN    +G +  ++V GC+A+   +++    P ++ VVG      + E++     
Sbjct: 66  EAISRKN----DGINKKIIVTGCLAERYQKQMDEEFPEIDAVVGIAKNDDIVEIINSVML 121

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            +RV+     +    E   +            A+L I +GC   C++C +P  RG   SR
Sbjct: 122 DRRVITFGDKLCHNMEGDKL-----QSTLPHYAYLRIADGCSNKCSYCAIPLIRGKMRSR 176

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            +  +++EA+K  +NGV E+ ++ Q+V A  G  L  +K    DLL  L +I G+  +R 
Sbjct: 177 KMENIIEEAKKFAENGVKELVIVAQDVTA-YGIDLY-KKYALPDLLKQLCKIDGIKWIRL 234

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
              +P  M+D LI+     D ++ Y+ +P+Q  +  IL++M R       R++  ++R  
Sbjct: 235 LYCYPERMTDELIETIKTEDKVLNYIDIPIQHCNKEILRNMYRGGDEQSLRELFAKLRRE 294

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P + + +  I GFPGET++ F    + V+ I + +   F YS    TP + M +QVDE 
Sbjct: 295 IPGVVLRTTLITGFPGETEEQFSELAEFVNDIKFERLGCFAYSAEEDTPAAEMPDQVDEG 354

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVL- 440
            +  R   +  +   +   +    +G   EV+ E   +      GRS    P +  ++  
Sbjct: 355 ERQRRADIITGEQEIRMGEYYAGMIGNTYEVVCEGFDRYSDMYFGRSMHFAPEIDGMIYF 414

Query: 441 ----NSKNHNIGDIIKVRITDVKISTLYGELV 468
               +     IGD + V+ITDV  + L GE V
Sbjct: 415 TSAKDKGPLTIGDFVNVKITDVLENNLLGERV 446


>gi|170758363|ref|YP_001788268.1| RNA modification protein [Clostridium botulinum A3 str. Loch Maree]
 gi|169405352|gb|ACA53763.1| RNA modification enzyme, MiaB family [Clostridium botulinum A3 str.
           Loch Maree]
          Length = 432

 Score =  360 bits (924), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 132/444 (29%), Positives = 232/444 (52%), Gaps = 16/444 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    + GC++NVY++  M + F  QGYE V+  + AD+ V+NTC +     +K    + 
Sbjct: 2   KVAFSTLGCRVNVYETEAMTEKFIKQGYEIVDFNEVADVYVINTCTVTNMGDKKSRQMIS 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R R       ++    ++ V GC +Q   EE+  +   V+VV+G +    +   + RA  
Sbjct: 62  RGR-------RQNSKAIIAVVGCYSQIAPEEV-SKIDGVDVVLGTRNKGDIVYWVNRAME 113

Query: 146 GKRVVDTDYSV--EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            K  V     V    +FE L+I +     +    AFL IQ+GC++FC++C++P+ RG   
Sbjct: 114 EKNQVIEVKDVLRNKEFEELNIEEY----RDKTRAFLKIQDGCNRFCSYCLIPFARGAVC 169

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           S+   ++++E +KL  +G  EI L G ++ A  G  L+G K   + +L  + +++G+ R+
Sbjct: 170 SKKPEKIMEEVQKLSKHGFKEIILSGIDI-ASYGFDLEG-KYNLTSILEEIDKVEGIQRI 227

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R  +  P   ++  I     L    P+ HL +QSG +  LK MNR++T  +Y++I+  +R
Sbjct: 228 RIGSIDPTFFTEEEIMRISKLKRFCPHFHLSLQSGCNETLKRMNRKYTVEQYKEIVHNLR 287

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           +    ++I++D IVGFPGET+++F  T + +  I  ++   FK+SPR GT    M  QVD
Sbjct: 288 TNIESVSITTDIIVGFPGETEEEFNKTYEFLRDIKLSKMHVFKFSPRKGTRAEEMKNQVD 347

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
             +K ER   +    ++ +  F +  + + + +L E+  KEKG   G +P    +   S 
Sbjct: 348 GKIKEERSNKIINLDKDLEKEFMNKFIEKEMPILYEQETKEKGIFEGYTPNYIKIYSKSS 407

Query: 444 NHNIGDIIKVRITDVKISTLYGEL 467
               G+II   + +V    + GE+
Sbjct: 408 KDITGEIINTTLKEVSKDFIKGEI 431


>gi|300691379|ref|YP_003752374.1| 2-methylthioadenine synthetase [Ralstonia solanacearum PSI07]
 gi|299078439|emb|CBJ51091.1| putative 2-methylthioadenine synthetase [Ralstonia solanacearum
           PSI07]
          Length = 459

 Score =  360 bits (924), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 121/477 (25%), Positives = 205/477 (42%), Gaps = 46/477 (9%)

Query: 15  SQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIRE 74
           S+   Q     R    S GC   + DS ++     ++GYE   +   ADL+V+NTC   +
Sbjct: 5   SESKTQADHNPRVGFVSLGCPKALVDSEQIITQLRAEGYEISGTYGGADLVVVNTCGFID 64

Query: 75  KAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVA----QAEGEEILRRSPIVNVVVGP 130
           +A ++    +G                 V+V GC+      A  + I    P V  V GP
Sbjct: 65  EAVQESLDAIGEALAENGK---------VIVTGCLGAKKDTAGNDIITSVHPKVLAVTGP 115

Query: 131 QTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190
                + E +                 D F  L +   G        A+L I EGC+  C
Sbjct: 116 HALGEVMEAVHTHLP---------KPHDPFIDL-VPPQGIKLTPKHYAYLKISEGCNHRC 165

Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE- 243
           +FC++P  RG  +SR +++V+ EA  L+  GV E+ ++ Q+ +A+      R    +G  
Sbjct: 166 SFCIIPSMRGDLVSRPVAEVMLEAENLLKAGVKELLVISQDTSAYGVDVKFRTGFWNGRP 225

Query: 244 -KCTFSDLLYSLSEI----KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
            K   ++L+ +L E+       VRL Y   +P       + A G    ++PYL +P+Q  
Sbjct: 226 LKTRMTELVGALGELAAQYGAWVRLHYVYPYPSVDEVMPLMAEG---KVLPYLDVPLQHA 282

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
              +LK M R   A +    I   R V P++ I S FI GFPGET+++F+  +D + +  
Sbjct: 283 HPEVLKRMKRPANAEKTLDRIRAWREVCPELTIRSTFIAGFPGETEEEFQTLLDFISEAE 342

Query: 359 YAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI 418
             +   F YSP  G   +++   + + V+ ER     +             VG+ + VL+
Sbjct: 343 LDRVGCFAYSPVEGATANDLPGALPDAVREERRARFMEVAERVSARRLQRKVGKTLRVLV 402

Query: 419 EKHGKEK--GKLVGRSPWLQSVVLNSKNHNI------GDIIKVRITDVKISTLYGEL 467
           ++  ++   G+    +P +  +V  +           GD + V+IT      L+GE+
Sbjct: 403 DEVNQDGGIGRSSADAPEIDGLVYIAPPSKPYKRYKAGDFVSVKITGADGHDLWGEV 459


>gi|207724170|ref|YP_002254568.1| 2-methylthioadenine synthetase protein [Ralstonia solanacearum
           MolK2]
 gi|206589380|emb|CAQ36342.1| 2-methylthioadenine synthetase protein [Ralstonia solanacearum
           MolK2]
          Length = 459

 Score =  360 bits (924), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 120/477 (25%), Positives = 205/477 (42%), Gaps = 46/477 (9%)

Query: 15  SQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIRE 74
           S+   Q     R    S GC   + DS ++     ++GYE   +   ADL+V+NTC   +
Sbjct: 5   SESKPQADHNPRVGFVSLGCPKALVDSEQIITQLRAEGYEISGTYGGADLVVVNTCGFID 64

Query: 75  KAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAE----GEEILRRSPIVNVVVGP 130
           +A ++    +G                 V+V GC+   +     + I    P V  V GP
Sbjct: 65  EAVQESLDAIGEALAENGK---------VIVTGCLGAKKDATGNDIITSVHPKVLAVTGP 115

Query: 131 QTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190
                + E +                 D F  L +   G        A+L I EGC+  C
Sbjct: 116 HALGEVMEAVHTHLP---------KPHDPFIDL-VPPQGIKLTPKHYAYLKISEGCNHRC 165

Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE- 243
           +FC++P  RG  +SR +++V+ EA  L+  GV E+ ++ Q+ +A+      R    +G  
Sbjct: 166 SFCIIPSMRGDLVSRPVAEVMLEAENLLKAGVKELLVISQDTSAYGVDVKFRTGFWNGRP 225

Query: 244 -KCTFSDLLYSLSEI----KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
            K   ++L+ +L E+       VRL Y   +P       + A G    ++PYL +P+Q  
Sbjct: 226 LKTRMTELVGALGELAAQYGAWVRLHYVYPYPSVDEVMPLMAEG---KVLPYLDVPLQHA 282

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
              +LK M R   A +    I   R V P++ I S FI GFPGET+++F+  +D + +  
Sbjct: 283 HPDVLKRMKRPANAEKTLDRIRAWREVCPELTIRSTFIAGFPGETEEEFQTLLDFIGEAE 342

Query: 359 YAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI 418
             +   F YSP  G   +++   + + V+ ER     +             VG+ + VL+
Sbjct: 343 LDRVGCFAYSPVEGATANDLPGALPDEVREERRARFMEVAERVSARRLQRKVGKTLRVLV 402

Query: 419 EKHGKEK--GKLVGRSPWLQSVVLNSKNHNI------GDIIKVRITDVKISTLYGEL 467
           ++  ++   G+    +P +  +V  +           GD + V+IT      L+GE+
Sbjct: 403 DEVNQDGGIGRSSADAPEIDGLVYIAPPSKPYKRYKTGDFVSVKITGADGHDLWGEV 459


>gi|76808795|ref|YP_333722.1| ribosomal protein S12 methylthiotransferase [Burkholderia
           pseudomallei 1710b]
 gi|126454903|ref|YP_001066463.1| putative tRNA modifying protein [Burkholderia pseudomallei 1106a]
 gi|134277408|ref|ZP_01764123.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Burkholderia
           pseudomallei 305]
 gi|167738299|ref|ZP_02411073.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Burkholderia
           pseudomallei 14]
 gi|167815485|ref|ZP_02447165.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Burkholderia
           pseudomallei 91]
 gi|167845434|ref|ZP_02470942.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Burkholderia
           pseudomallei B7210]
 gi|217421309|ref|ZP_03452813.1| MiaB-like tRNA modifying enzyme YliG [Burkholderia pseudomallei
           576]
 gi|242314138|ref|ZP_04813154.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Burkholderia
           pseudomallei 1106b]
 gi|254179580|ref|ZP_04886179.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Burkholderia
           pseudomallei 1655]
 gi|254189030|ref|ZP_04895541.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Burkholderia
           pseudomallei Pasteur 52237]
 gi|254259851|ref|ZP_04950905.1| MiaB-like tRNA modifying enzyme YliG [Burkholderia pseudomallei
           1710a]
 gi|254297456|ref|ZP_04964909.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Burkholderia
           pseudomallei 406e]
 gi|123744448|sp|Q3JRT1|RIMO_BURP1 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|238065308|sp|A3NVU2|RIMO_BURP0 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|76578248|gb|ABA47723.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Burkholderia
           pseudomallei 1710b]
 gi|126228545|gb|ABN92085.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Burkholderia
           pseudomallei 1106a]
 gi|134251058|gb|EBA51137.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Burkholderia
           pseudomallei 305]
 gi|157807873|gb|EDO85043.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Burkholderia
           pseudomallei 406e]
 gi|157936709|gb|EDO92379.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Burkholderia
           pseudomallei Pasteur 52237]
 gi|184210120|gb|EDU07163.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Burkholderia
           pseudomallei 1655]
 gi|217395051|gb|EEC35069.1| MiaB-like tRNA modifying enzyme YliG [Burkholderia pseudomallei
           576]
 gi|242137377|gb|EES23779.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Burkholderia
           pseudomallei 1106b]
 gi|254218540|gb|EET07924.1| MiaB-like tRNA modifying enzyme YliG [Burkholderia pseudomallei
           1710a]
          Length = 463

 Score =  360 bits (924), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 125/479 (26%), Positives = 210/479 (43%), Gaps = 48/479 (10%)

Query: 16  QIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREK 75
           +   + +   +  + S GC   + DS ++     ++GYE   + D ADL+V+NTC   ++
Sbjct: 6   KSSGKPLAAPKVGMVSLGCPKALVDSEQIITQLRAEGYEISGTYDGADLVVVNTCGFIDE 65

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEE----ILRRSPIVNVVVGPQ 131
           A ++    +G                 V+V GC+   +       I    P V  V GP 
Sbjct: 66  AVQESLDAIGEALAENGK---------VIVTGCLGAKKSASGSGLIAEVHPKVLAVTGPH 116

Query: 132 TYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCT 191
               + + +                 D F  L    G     R   A+L I EGC+  C+
Sbjct: 117 AVGEVMQAVHSHLP---------KPHDPFVDLVPAAGIKLTPRHY-AYLKISEGCNHRCS 166

Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE-- 243
           FC++P  RG  +SR +++V+ EA  L  +GV E+ ++ Q+ +A+      R    +G   
Sbjct: 167 FCIIPSMRGELVSRPVAEVMLEAENLFKSGVKELLVISQDTSAYGVDVKYRTGFWNGRPL 226

Query: 244 KCTFSDLLYSLSEI----KGLVRLRYTTSHPRDMSDCLIKAHGDLD-VLMPYLHLPVQSG 298
           K   ++L+ +L E+       VRL Y   +P       + A G L   ++PYL +P Q  
Sbjct: 227 KTRMTELVGALGELAAQYGAWVRLHYVYPYPHVDEIIPMMAQGPLKGHVLPYLDVPFQHA 286

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
              +LK M R   A    + + + R + PD+ I S FI GFPGETD  F   +D + +  
Sbjct: 287 HPEVLKRMKRPANAERVLERVQKWREICPDLTIRSTFIAGFPGETDAQFETLLDFIREAE 346

Query: 359 YAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI 418
             +   F YSP  G   + +   + ++V+  R     +   E   +     VG+ ++VLI
Sbjct: 347 LDRVGCFAYSPVEGASANALDGALPDDVREARRARFMEVAEEVSAARIARKVGKTLKVLI 406

Query: 419 EKHGKEKGKLVGRS----PWLQSVVLN------SKNHNIGDIIKVRITDVKISTLYGEL 467
           ++   E G  +GR+    P +  VV        SK + +G+ + V+IT      L+GE+
Sbjct: 407 DEVNAEGG--IGRTAADAPEIDGVVYVEPAAKASKRYKVGEFVSVKITGADGHDLWGEV 463


>gi|333030363|ref|ZP_08458424.1| Ribosomal protein S12 methylthiotransferase rimO [Bacteroides
           coprosuis DSM 18011]
 gi|332740960|gb|EGJ71442.1| Ribosomal protein S12 methylthiotransferase rimO [Bacteroides
           coprosuis DSM 18011]
          Length = 431

 Score =  360 bits (924), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 113/456 (24%), Positives = 202/456 (44%), Gaps = 35/456 (7%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDA--DLIVLNTCHIREKAAEKV 80
           + +   + + GC  N+ DS ++     + GY   +  ++   D+ V+NTC     A E+ 
Sbjct: 1   MKKTIDIITLGCSKNLVDSEQLIRQLEASGYHVEHDPEEPQGDIAVINTCGFIGDAKEES 60

Query: 81  YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140
            + +      K      G    + V GC+++   +E+    P V+   G   +  L   L
Sbjct: 61  INMILEFAQAKEE----GVLDKLFVMGCLSERYLKELQIEIPQVDKFYGKFDWKGLLADL 116

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
            +          +Y  +   ER       Y       A+L I EGCD+ C++C +P   G
Sbjct: 117 GK----------NYDPKLHLERSLTTPDHY-------AYLKISEGCDRTCSYCAIPIITG 159

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
             +SR +  ++DE + L+  GV E  ++ Q +  + G  L  +K    +L+  ++ I G+
Sbjct: 160 KHVSRPMEDILDEVKLLVGQGVREFQVIAQELT-YYGVDLY-KKQRLPELIERMAAIPGV 217

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
             +R   ++P      L++   + D +  YL + +Q  SD +L  M R  T  +  ++I 
Sbjct: 218 EWIRLHYAYPAHFPYDLLRVMRENDNVCKYLDIALQHISDNMLSKMRRNVTKADTLEMIR 277

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT-PGSNML 379
           R+R+  P I I +  +VG PGET+ DF    D V ++ + +  +F YS   GT    N  
Sbjct: 278 RMRAEVPGIHIRTTLMVGHPGETEQDFEELKDFVREVKFDRMGAFAYSEEEGTFSAKNYE 337

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWL 435
           +++ ++VK  RL  L    +          VG    V+I++   E    +GR+    P +
Sbjct: 338 DEISDDVKQARLSELMDIQQSVSAEVAQRKVGTEQRVIIDRI--EGEYFIGRTQYDSPEV 395

Query: 436 QSVVL---NSKNHNIGDIIKVRITDVKISTLYGELV 468
              VL     ++  IG    V+I+      LYG+L+
Sbjct: 396 DPEVLIKDEGQDIEIGYFYDVKISGSDDFDLYGDLI 431


>gi|281355187|ref|ZP_06241681.1| MiaB-like tRNA modifying enzyme YliG [Victivallis vadensis ATCC
           BAA-548]
 gi|281318067|gb|EFB02087.1| MiaB-like tRNA modifying enzyme YliG [Victivallis vadensis ATCC
           BAA-548]
          Length = 452

 Score =  360 bits (923), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 118/449 (26%), Positives = 203/449 (45%), Gaps = 19/449 (4%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
            ++ S GC  N+ D+  +     + G       D+ADL V+NTC     A ++    +  
Sbjct: 15  LYLVSLGCSKNLVDTEVIAGTLLTSGRTLAFEPDEADLYVINTCAFIPAARDEAREAIED 74

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGE-EILRRSPIVNVVVGPQTYYRLPELLER-AR 144
               K          L+VVAGC+ + + +  + +  P V++  G      +  LL+R + 
Sbjct: 75  GIVWKQE----KPGRLLVVAGCLTEWDKDGSVRKEYPEVDLWTGVNQVAEIARLLDRQST 130

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
             +   +  Y  +D   RL +            A+L I +GC+  CT+C +P  RG   +
Sbjct: 131 LPENAEEPVYLYDDCTPRLQL-------TLPHLAYLKIADGCNNRCTYCSIPGIRGRLRT 183

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R +  VV EAR LI+ GV E+ ++ Q++    G        T + LL +L+ ++G   +R
Sbjct: 184 RPMESVVREARNLIEGGVRELLVIAQDIT-VYGNDRPESGDTLARLLTALNALEGNFVIR 242

Query: 265 YTTSHPRDMSDCLIKAHGD-LDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
              +HP   ++  I         ++PYL +P+Q  SDRILK MNR  T  +  +++ ++R
Sbjct: 243 LLYTHPAHYTEEFIDFMARGNTKVLPYLDIPLQHISDRILKQMNRHVTRKQTEELLTKLR 302

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              P + + + FI GFPGET+++++       K  + +   F YSP   TP +   +QV 
Sbjct: 303 ERIPGLTLRTTFITGFPGETEEEYQELKSFAKKFKFERCGVFPYSPEPRTPAAAFPDQVP 362

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG--RSPWLQSVVL- 440
             +  +R   L K+        +   VG+ + VL++   +      G   +P + +V+  
Sbjct: 363 AELAEQRSTELMKQQISIMKKLSKNQVGKTVRVLVDDVDENGAVARGAMDAPEIDNVIYI 422

Query: 441 -NSKNHNIGDIIKVRITDVKISTLYGELV 468
              K    G    V+IT      L  ELV
Sbjct: 423 PKPKRLKPGKFCLVKITGTDGCDLIAELV 451


>gi|42527084|ref|NP_972182.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Treponema
           denticola ATCC 35405]
 gi|81412170|sp|Q73MD3|MIAB_TREDE RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|41817508|gb|AAS12093.1| tRNA-i(6)A37 modification enzyme MiaB [Treponema denticola ATCC
           35405]
          Length = 451

 Score =  360 bits (923), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 151/456 (33%), Positives = 248/456 (54%), Gaps = 21/456 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
            +F ++YGCQMN  +S  ME +   +G+   +  +  DL+++NTC +R  A  +V   LG
Sbjct: 2   TYFFETYGCQMNQAESSSMEQILLEKGWTNSSDAEHCDLLIINTCSVRITAENRVLGRLG 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
               LK  R        V++ GC+A+    EI +  P+++ VVG      LP++ +  + 
Sbjct: 62  HFSGLKKKRK-----FFVLLIGCMAERLYTEIQKEFPLIDYVVGMFERNLLPQIFDEIKA 116

Query: 146 GKRVVDTDYSVE---DKFERLSIVDGGY----NRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
             R+ + +Y  E   D  E   +    +    +  +   +++ I  GC+ FCT+C+VPY 
Sbjct: 117 --RLKNDNYMAEFTHDNIEEKPVSGYYFAPLSHSPKSFQSYVPIMNGCNNFCTYCIVPYV 174

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS--- 255
           RG E+SR +++++ E  +L   GV EITLLGQNVN+++G+  +G    F  LL  ++   
Sbjct: 175 RGREVSRPVNEILQEITELSSRGVREITLLGQNVNSYKGEDGEGRLIDFPKLLTLIAREA 234

Query: 256 -EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
            +   +  +R+ +SHP+DMSD LI        L   +HLPVQ GSD ILK MNR +T   
Sbjct: 235 DKTDMIRWIRFMSSHPKDMSDALIDTIAAEKRLCKLVHLPVQHGSDTILKRMNRVYTIEH 294

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
           Y+  I R++   PDIA+S+D ++GFPGET+DD +AT+DL+ +I +  AF + Y+PR GT 
Sbjct: 295 YKNRIKRLKETIPDIALSTDILMGFPGETEDDVKATLDLMQEIEFDSAFMYHYNPREGTK 354

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSP 433
             N  +++ E VK ERL  +     +       A +G+ +++L+E H + E+ +L G + 
Sbjct: 355 AFNYPDRIPEEVKIERLGRVIDLQLKITAKKMKAKLGKKVDILVESHSRNERSELFGHTE 414

Query: 434 WLQSVVLNS--KNHNIGDIIKVRITDVKISTLYGEL 467
             +  V+        IG+     + ++K  T    L
Sbjct: 415 QGEMTVIQGNPPESLIGNFAHAELKELKGKTFRANL 450


>gi|167823898|ref|ZP_02455369.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Burkholderia
           pseudomallei 9]
 gi|167893977|ref|ZP_02481379.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Burkholderia
           pseudomallei 7894]
 gi|167910667|ref|ZP_02497758.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Burkholderia
           pseudomallei 112]
 gi|167918695|ref|ZP_02505786.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Burkholderia
           pseudomallei BCC215]
 gi|226197418|ref|ZP_03792995.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Burkholderia
           pseudomallei Pakistan 9]
 gi|237812521|ref|YP_002896972.1| hypothetical protein GBP346_A2270 [Burkholderia pseudomallei
           MSHR346]
 gi|254197896|ref|ZP_04904318.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Burkholderia
           pseudomallei S13]
 gi|169654637|gb|EDS87330.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Burkholderia
           pseudomallei S13]
 gi|225930797|gb|EEH26807.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Burkholderia
           pseudomallei Pakistan 9]
 gi|237503383|gb|ACQ95701.1| conserved hypothetical protein [Burkholderia pseudomallei MSHR346]
          Length = 463

 Score =  360 bits (923), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 124/479 (25%), Positives = 210/479 (43%), Gaps = 48/479 (10%)

Query: 16  QIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREK 75
           +   + +   +  + S GC   + DS ++     ++GYE   + D ADL+V+NTC   ++
Sbjct: 6   KSSGKPLAAPKVGMVSLGCPKALVDSEQIITQLRAEGYEISGTYDGADLVVVNTCGFIDE 65

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEE----ILRRSPIVNVVVGPQ 131
           A ++    +G                 V+V GC+   +       I    P V  V GP 
Sbjct: 66  AVQESLDAIGEALAENGK---------VIVTGCLGAKKSASGSGLIAEVHPKVLAVTGPH 116

Query: 132 TYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCT 191
               + + +                 D F  L    G     R   A+L I EGC+  C+
Sbjct: 117 AVGEVMQAVHSHLP---------KPHDPFVDLVPAAGIKLTPRHY-AYLKISEGCNHRCS 166

Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE-- 243
           FC++P  RG  +SR +++V+ EA  L  +GV E+ ++ Q+ +A+      R    +G   
Sbjct: 167 FCIIPSMRGELVSRPVAEVMLEAENLFKSGVKELLVISQDTSAYGVDVKYRTGFWNGRPL 226

Query: 244 KCTFSDLLYSLSEI----KGLVRLRYTTSHPRDMSDCLIKAHGDLD-VLMPYLHLPVQSG 298
           K   ++L+ +L E+       VRL Y   +P       + A G L   ++PYL +P Q  
Sbjct: 227 KTRMTELVGALGELAAQYGAWVRLHYVYPYPHVDEIIPMMAQGPLKGHVLPYLDVPFQHA 286

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
              +LK M R   A    + + + R + PD+ I S FI GFPGETD  F   +D + +  
Sbjct: 287 HPEVLKRMKRPANAERVLERVQKWREICPDLTIRSTFIAGFPGETDAQFETLLDFIREAE 346

Query: 359 YAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI 418
             +   F YSP  G   + +   + ++V+  R     +   E   +     +G+ ++VLI
Sbjct: 347 LDRVGCFAYSPVEGASANALDGALPDDVREARRARFMEVAEEVSAARIARKIGKTLKVLI 406

Query: 419 EKHGKEKGKLVGRS----PWLQSVVLN------SKNHNIGDIIKVRITDVKISTLYGEL 467
           ++   E G  +GR+    P +  VV        SK + +G+ + V+IT      L+GE+
Sbjct: 407 DEVNAEGG--IGRTAADAPEIDGVVYVEPAAKASKRYKVGEFVSVKITGADGHDLWGEV 463


>gi|167902426|ref|ZP_02489631.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Burkholderia
           pseudomallei NCTC 13177]
          Length = 463

 Score =  360 bits (923), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 125/479 (26%), Positives = 210/479 (43%), Gaps = 48/479 (10%)

Query: 16  QIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREK 75
           +   + +   +  + S GC   + DS ++     ++GYE   + D ADL+V+NTC   ++
Sbjct: 6   KSSGKPLAAPKVGMVSLGCPKALVDSEQIITQLRAEGYEISGTYDGADLVVVNTCGFIDE 65

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEE----ILRRSPIVNVVVGPQ 131
           A ++    +G                 V+V GC+   +       I    P V  V GP 
Sbjct: 66  AVQESLDAIGEALAENGK---------VIVTGCLGAKKSASGSGLIAEVHPKVLAVTGPH 116

Query: 132 TYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCT 191
               + + +                 D F  L    G     R   A+L I EGC+  C+
Sbjct: 117 AVGEVMQAVHSHLP---------KPHDPFVDLVPAAGIKLTPRHY-AYLKISEGCNHRCS 166

Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE-- 243
           FC++P  RG  +SR +++V+ EA  L  +GV E+ ++ Q+ +A+      R    +G   
Sbjct: 167 FCIIPSMRGELVSRPVAEVMLEAENLFKSGVKELLVISQDTSAYGVDVKYRTGFWNGRPL 226

Query: 244 KCTFSDLLYSLSEI----KGLVRLRYTTSHPRDMSDCLIKAHGDLD-VLMPYLHLPVQSG 298
           K   ++L+ +L E+       VRL Y   +P       + A G L   ++PYL +P Q  
Sbjct: 227 KTRMTELVGALGELAAQYGAWVRLHYVYPYPHVDEIIPMMAQGPLKGHVLPYLDVPFQHA 286

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
              +LK M R   A    + + + R + PD+ I S FI GFPGETD  F A +D +    
Sbjct: 287 HPEVLKRMKRPANAERVLERVQKWREICPDLTIRSTFIAGFPGETDAQFEALLDFIRDAE 346

Query: 359 YAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI 418
             +   F YSP  G   + +   + ++V+  R     +   E   +     +G+ ++VLI
Sbjct: 347 LDRVGCFAYSPVEGASANALDGALPDDVREARRARFMEVAEEVSAARIARKIGKTLKVLI 406

Query: 419 EKHGKEKGKLVGRS----PWLQSVVLN------SKNHNIGDIIKVRITDVKISTLYGEL 467
           ++   E G  +GR+    P +  VV        SK + +G+ + V+IT      L+GE+
Sbjct: 407 DEVNAEGG--IGRTAADAPEIDGVVYVEPAAKASKRYKVGEFVSVKITGADGHDLWGEV 463


>gi|291556571|emb|CBL33688.1| SSU ribosomal protein S12P methylthiotransferase [Eubacterium
           siraeum V10Sc8a]
          Length = 446

 Score =  360 bits (923), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 121/452 (26%), Positives = 212/452 (46%), Gaps = 20/452 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +  + S GC  N  D+  M       G++ VN    AD++++NTC   + A E+    + 
Sbjct: 6   KVGMVSLGCPKNQCDAELMLAKIAKAGFKIVNEAGLADVVIINTCGFIQSAKEEAIEEIM 65

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
              + KN    +G +  ++V GC+A+   +++    P ++ VVG      + E++     
Sbjct: 66  EAISRKN----DGINKKIIVTGCLAERYQKQMDEEFPEIDAVVGIAKNDDIVEIINSVML 121

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            +RV+     +    E   +            A+L I +GC   C++C +P  RG   SR
Sbjct: 122 DRRVITFGDKLCHNMEGDKL-----QSTLPHYAYLRIADGCSNKCSYCAIPLIRGKMRSR 176

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            +  +++EA+K  +NGV E+ ++ Q+V A  G  L  +K    DLL  L +I G+  +R 
Sbjct: 177 KMENIIEEAKKFAENGVKELVIVAQDVTA-YGIDLY-KKYALPDLLKQLCKIDGIKWIRL 234

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
              +P  M+D LI+     D ++ Y+ +P+Q  +  IL++M R       R++  ++R  
Sbjct: 235 LYCYPERMTDELIETIKTEDKVLNYIDIPIQHCNKEILRNMYRGGDEQSLRELFAKLRRE 294

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P + + +  I GFPGET++ F    + V+ I + +   F YS    TP + M +QVDE 
Sbjct: 295 IPGVVLRTTLITGFPGETEEQFSELAEFVNDIKFERLGCFAYSAEEDTPAAEMPDQVDEG 354

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVL- 440
            +  R   +  +   +   +    VG   EV+ E   +      GRS    P +  ++  
Sbjct: 355 ERQRRADIITSEQEIRMGEYYAGMVGNTYEVVCEGFDRYSDMYFGRSMHFAPEIDGMIYF 414

Query: 441 ----NSKNHNIGDIIKVRITDVKISTLYGELV 468
               +  +  IGD + V+ITDV  + L GE V
Sbjct: 415 TSAKDKGSLTIGDFVNVKITDVLENNLLGERV 446


>gi|53719172|ref|YP_108158.1| ribosomal protein S12 methylthiotransferase [Burkholderia
           pseudomallei K96243]
 gi|81379851|sp|Q63UQ8|RIMO_BURPS RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|52209586|emb|CAH35539.1| conserved hypothetical protein [Burkholderia pseudomallei K96243]
          Length = 459

 Score =  360 bits (923), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 125/479 (26%), Positives = 210/479 (43%), Gaps = 48/479 (10%)

Query: 16  QIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREK 75
           +   + +   +  + S GC   + DS ++     ++GYE   + D ADL+V+NTC   ++
Sbjct: 2   KSSGKPLAAPKVGMVSLGCPKALVDSEQIITQLRAEGYEISGTYDGADLVVVNTCGFIDE 61

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEE----ILRRSPIVNVVVGPQ 131
           A ++    +G                 V+V GC+   +       I    P V  V GP 
Sbjct: 62  AVQESLDAIGEALAENGK---------VIVTGCLGAKKSASGSGLIAEVHPKVLAVTGPH 112

Query: 132 TYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCT 191
               + + +                 D F  L    G     R   A+L I EGC+  C+
Sbjct: 113 AVGEVMQAVHSHLP---------KPHDPFVDLVPAAGIKLTPRHY-AYLKISEGCNHRCS 162

Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE-- 243
           FC++P  RG  +SR +++V+ EA  L  +GV E+ ++ Q+ +A+      R    +G   
Sbjct: 163 FCIIPSMRGELVSRPVAEVMLEAENLFKSGVKELLVISQDTSAYGVDVKYRTGFWNGRPL 222

Query: 244 KCTFSDLLYSLSEI----KGLVRLRYTTSHPRDMSDCLIKAHGDLD-VLMPYLHLPVQSG 298
           K   ++L+ +L E+       VRL Y   +P       + A G L   ++PYL +P Q  
Sbjct: 223 KTRMTELVGALGELAAQYGAWVRLHYVYPYPHVDEIIPMMAQGPLKGHVLPYLDVPFQHA 282

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
              +LK M R   A    + + + R + PD+ I S FI GFPGETD  F   +D + +  
Sbjct: 283 HPEVLKRMKRPANAERVLERVQKWREICPDLTIRSTFIAGFPGETDAQFETLLDFIREAE 342

Query: 359 YAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI 418
             +   F YSP  G   + +   + ++V+  R     +   E   +     VG+ ++VLI
Sbjct: 343 LDRVGCFAYSPVEGASANALDGALPDDVREARRARFMEVAEEVSAARIARKVGKTLKVLI 402

Query: 419 EKHGKEKGKLVGRS----PWLQSVVLN------SKNHNIGDIIKVRITDVKISTLYGEL 467
           ++   E G  +GR+    P +  VV        SK + +G+ + V+IT      L+GE+
Sbjct: 403 DEVNAEGG--IGRTAADAPEIDGVVYVEPAAKASKRYKVGEFVSVKITGADGHDLWGEV 459


>gi|299133921|ref|ZP_07027115.1| MiaB-like tRNA modifying enzyme YliG [Afipia sp. 1NLS2]
 gi|298591757|gb|EFI51958.1| MiaB-like tRNA modifying enzyme YliG [Afipia sp. 1NLS2]
          Length = 440

 Score =  360 bits (923), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 126/463 (27%), Positives = 203/463 (43%), Gaps = 39/463 (8%)

Query: 18  VDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA 77
           +     P+  FV S GC   + DS R+     ++GYE     D AD++++NTC   + A 
Sbjct: 1   MTTASAPKISFV-SLGCPKALVDSERIITRLRAEGYELARKHDGADIVIVNTCGFLDSAK 59

Query: 78  EKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLP 137
           ++    +G              +  V+V GC+  AE E+I +  P V  + GPQ Y  + 
Sbjct: 60  QESLGAIGEA---------MAENGKVIVTGCMG-AEPEQIEKEYPNVLSITGPQQYESVL 109

Query: 138 ELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197
           E + RA                     +   G        A+L I EGC+  CTFC++P 
Sbjct: 110 EAVHRAL----------PPMHNPHLDLVPPQGIKLTPRHYAYLKISEGCNNRCTFCIIPK 159

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE---------KCTFS 248
            RG  +SR  + V+ EA KL+  GV E+ ++ Q+ +A  G  +  E         +  F 
Sbjct: 160 LRGDLVSRPANDVLREAEKLVAAGVKELLVVSQDTSA-YGIDIKYESSPWKDRDVRARFL 218

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
           DL   L E+   VRL+Y   +P       +        ++PYL +P Q  +  +LK M R
Sbjct: 219 DLTRELGELGAWVRLQYVYPYPHVDDVIALM----GGNILPYLDIPFQHANPEVLKRMRR 274

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
                +    I + R   PD+ + S FIVGFPGET+ +F+  +D +D+    +   FKY 
Sbjct: 275 PAAQDKTLARIHKWREQCPDLTLRSTFIVGFPGETESEFQDLLDWLDEAQIDRLGCFKYE 334

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE--KG 426
           P  G   + +   V + +K  R   L  + ++         VG   +V+I++ G    KG
Sbjct: 335 PVAGVTSNALDNPVPDEIKTARWNALMARQQKISAQRLKRKVGTRQQVIIDEIGPSVAKG 394

Query: 427 KLVGRSPWLQSVVLNSK--NHNIGDIIKVRITDVKISTLYGEL 467
           +    +P +   V  S      +GDI+  +I       L+G +
Sbjct: 395 RSKADAPQIDGSVYVSSRRPLKVGDIVTAKIERADEYDLHGTV 437


>gi|148380907|ref|YP_001255448.1| RNA modification enzyme, MiaB family [Clostridium botulinum A str.
           ATCC 3502]
 gi|153931336|ref|YP_001385215.1| RNA modification protein [Clostridium botulinum A str. ATCC 19397]
 gi|153937595|ref|YP_001388684.1| RNA modification protein [Clostridium botulinum A str. Hall]
 gi|148290391|emb|CAL84518.1| putative radical SAM superfamily protein [Clostridium botulinum A
           str. ATCC 3502]
 gi|152927380|gb|ABS32880.1| RNA modification enzyme, MiaB family [Clostridium botulinum A str.
           ATCC 19397]
 gi|152933509|gb|ABS39008.1| RNA modification enzyme, MiaB family [Clostridium botulinum A str.
           Hall]
          Length = 432

 Score =  360 bits (923), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 133/444 (29%), Positives = 231/444 (52%), Gaps = 16/444 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    + GC++NVY++  M + F  QGYE V+  + AD+ V+NTC +     +K    + 
Sbjct: 2   KVAFSTLGCRVNVYETEAMTEKFIKQGYEIVDFNEVADVYVINTCTVTNMGDKKSRQMIS 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R R       ++    ++ V GC +Q   EE+  +   V+VV+G +    +   + RA  
Sbjct: 62  RGR-------RQNSKAIIAVVGCYSQIAPEEV-SKIDGVDVVLGTRNKGDIVYWVNRAME 113

Query: 146 GKRVVDTDYSV--EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            K  V     V    +FE L+I +     +    AFL IQ+GC++FC++C++P+ RG   
Sbjct: 114 EKNQVIEVKDVLRNKEFEELNIEEY----RDKTRAFLKIQDGCNRFCSYCLIPFARGAVC 169

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           S+   ++++E  KL  +G  EI L G ++ A  G  L+G K   + +L  + +++G+ R+
Sbjct: 170 SKKPEKIMEEVEKLSKHGFKEIILSGIDI-ASYGFDLEG-KYNLTSILEEIDKVEGIERI 227

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R  +  P   ++  I     L    P+ HL +QSG +  LK MNR++T  +Y++I+  +R
Sbjct: 228 RIGSIDPTFFTEEEIIRISKLKRFCPHFHLSLQSGCNETLKRMNRKYTVEQYKEIVHNLR 287

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           +    ++I++D IVGFPGET+++F  T + +  I  ++   FK+SPR GT    M  QVD
Sbjct: 288 TNIESVSITTDIIVGFPGETEEEFNKTYEFLRDIKLSKMHVFKFSPRKGTRAEEMKNQVD 347

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
             +K ER   +    ++ +  F +  + + + VL E+  KEKG   G +P    +   S 
Sbjct: 348 GKIKEERSNKIINLDKDLEKEFMNKFIEKEMPVLYEQETKEKGIFEGYTPNYIKIYSKSS 407

Query: 444 NHNIGDIIKVRITDVKISTLYGEL 467
               G+II   + +V    + GE+
Sbjct: 408 KDITGEIINTTLKEVSKDFIKGEI 431


>gi|114798740|ref|YP_760652.1| 30S ribosomal protein S12 methylthiotransferase [Hyphomonas
           neptunium ATCC 15444]
 gi|122942374|sp|Q0C0U1|RIMO_HYPNA RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|114738914|gb|ABI77039.1| RNA modification enzyme, MiaB family [Hyphomonas neptunium ATCC
           15444]
          Length = 451

 Score =  360 bits (923), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 129/473 (27%), Positives = 207/473 (43%), Gaps = 39/473 (8%)

Query: 10  VAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNT 69
             ++      +     +  + S GC   + DS R+     ++GY+       ADL+++NT
Sbjct: 2   TLNLDRPAPLRPKTQPKVGIVSLGCPKALVDSERIITRLRAEGYQIAPDYAGADLVLVNT 61

Query: 70  CHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG 129
           C   + A ++  + +G                 V+V GC+  AE E I R  P V  V G
Sbjct: 62  CGFLDSARDESLAAIGEAIEANGK---------VIVTGCLG-AEPEVIQRAHPKVLAVTG 111

Query: 130 PQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKF 189
           P  Y  + +           V T  +         + + G        A+L I EGC+  
Sbjct: 112 PHQYEAVMD----------AVHTHLTPPHNPHMDLVPESGLRLTPRHYAYLKISEGCNNR 161

Query: 190 CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK----- 244
           C+FC++P  RG   SR +  V+ EA KL+  GV E+ ++ Q+ +A  G  +  +      
Sbjct: 162 CSFCIIPKLRGDLASRPIHHVLMEAEKLVAAGVKELLVISQDTSA-YGLDIRYKPETWRG 220

Query: 245 ----CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300
                 F DL   L  +    R+ Y   +P   +   + A G   ++ PYL +P Q  S 
Sbjct: 221 SEYETRFLDLAKGLGSLGVWTRMHYVYPYPHVDNVIPLMAEG---LITPYLDIPFQHASA 277

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
            +LK+M R     +    I + R   PD+AI S FIVGFPGET++DF+  +D + +    
Sbjct: 278 PVLKAMKRPGNQDKVLGRIAKWREQVPDLAIRSTFIVGFPGETEEDFQILLDFIREAKID 337

Query: 361 QAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
           +A  FKY          +   V E VK ER         E   +  +A VG+ ++V+I+ 
Sbjct: 338 RAGCFKYENVAHAESGKLEGHVPEEVKEERWHRFMTAQAEVSAARAEAQVGRTLDVIIDG 397

Query: 421 HGKEKGKLVGRS----PWLQSVVL--NSKNHNIGDIIKVRITDVKISTLYGEL 467
            G+E G+++ R+    P + +VV   N+ +   GDII+  IT      LY   
Sbjct: 398 PGEEAGEMIARTQADAPEVDAVVYLENAAHLKAGDIIRAEITGADDYDLYATP 450


>gi|238027205|ref|YP_002911436.1| ribosomal protein S12 methylthiotransferase [Burkholderia glumae
           BGR1]
 gi|237876399|gb|ACR28732.1| 2-methylthioadenine synthetase [Burkholderia glumae BGR1]
          Length = 460

 Score =  360 bits (923), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 129/476 (27%), Positives = 207/476 (43%), Gaps = 49/476 (10%)

Query: 19  DQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAE 78
           +Q   P R  + S GC   + DS ++     ++GYE   + D ADL+V+NTC   + A +
Sbjct: 4   NQTSSP-RIGIVSLGCPKALVDSEQIITQLRAEGYEISGTYDGADLVVVNTCGFIDDAVQ 62

Query: 79  KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEE----ILRRSPIVNVVVGPQTYY 134
           +    +G                 V+V GC+   +       I    P V  V GP    
Sbjct: 63  ESLDAIGEALTENGK---------VIVTGCLGAKKSASGAGLIEEVHPKVLAVTGPHALG 113

Query: 135 RLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCV 194
            + + +                 D F  L    G     R   A+L I EGC+  CTFC+
Sbjct: 114 EVMQAVHSHLP---------KPHDPFVDLVPAAGIKLTPRHY-AYLKISEGCNHRCTFCI 163

Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCT 246
           +P  RG  ISR +++V+ EA  L  +GV E+ ++ Q+ +A+      R    +G   K  
Sbjct: 164 IPSMRGDLISRPVAEVMLEAENLFKSGVKELLVISQDTSAYGVDVKYRTGFWNGRPLKTR 223

Query: 247 FSDLLYSLSEI----KGLVRLRYTTSHPRDMSDCLIKAHGDLD-VLMPYLHLPVQSGSDR 301
            ++L+ +L E+       VRL Y   +P       + A G     ++PYL +P Q     
Sbjct: 224 MTELVAALGELAAQYGAWVRLHYVYPYPHVDEIIPLMAEGAYRGHVLPYLDVPFQHADPD 283

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
           +LK M R   A +    + + R V PD+ I S FI GFPGET+  F   +D + +    +
Sbjct: 284 VLKRMRRPANAEKVLDRVRKWREVCPDLTIRSTFIAGFPGETEAQFETLLDFIREAELDR 343

Query: 362 AFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKH 421
              F YSP  G   + +   + + V+  R     +   E   +  +  +GQ ++VLI++ 
Sbjct: 344 VGCFAYSPVEGATANELDGALPDEVREARRARFMEVAEEVSAARIERKIGQTLKVLIDEV 403

Query: 422 GKEKGKLVGRS----PWLQSVVLN------SKNHNIGDIIKVRITDVKISTLYGEL 467
             E G  +GR+    P +  VV        +K + +GD + V IT      L+GE+
Sbjct: 404 NAEGG--IGRTAADAPEIDGVVYVEPAPKGAKRYKVGDFVSVAITGADGHDLWGEV 457


>gi|187928991|ref|YP_001899478.1| ribosomal protein S12 methylthiotransferase [Ralstonia pickettii
           12J]
 gi|238066577|sp|B2UFU5|RIMO_RALPJ RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|187725881|gb|ACD27046.1| MiaB-like tRNA modifying enzyme YliG [Ralstonia pickettii 12J]
          Length = 453

 Score =  360 bits (923), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 118/475 (24%), Positives = 204/475 (42%), Gaps = 46/475 (9%)

Query: 17  IVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA 76
           + D      +    S GC   + DS ++     ++GYE   +   ADL+V+NTC   ++A
Sbjct: 1   MSDVSTQSPKVGFVSLGCPKALVDSEQIITQLRAEGYEISGTYGGADLVVVNTCGFIDEA 60

Query: 77  AEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAE----GEEILRRSPIVNVVVGPQT 132
            ++    +G                 V+V GC+   +     + I    P V  V GP  
Sbjct: 61  VQESLDAIGEALAENGK---------VIVTGCLGAKKDASGQDIITSVHPKVLAVTGPHA 111

Query: 133 YYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTF 192
              + E +                 D F  L +   G        A+L I EGC+  C+F
Sbjct: 112 LGEVMEAVHTHLP---------KPHDPFIDL-VPPQGIKLTPKHYAYLKISEGCNHRCSF 161

Query: 193 CVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--K 244
           C++P  RG  +SR +++V+ EA  L+  GV E+ ++ Q+ +A+      R    +G   K
Sbjct: 162 CIIPSMRGDLVSRPVAEVMLEAENLLKAGVKELLVISQDTSAYGVDVKFRMGFWNGRPLK 221

Query: 245 CTFSDLLYSLSEI----KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300
              ++L+ +L E+       VRL Y   +P       + A G    ++PYL +P+Q    
Sbjct: 222 TRMTELVGALGELASQYGAWVRLHYVYPYPSVDEVMPLMAEG---KVLPYLDVPLQHAHP 278

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
            +LK M R   A +    I   R V P++ I S FI GFPGET+++F+  +D + +    
Sbjct: 279 DVLKRMKRPANAEKTLDRIRAWREVCPELTIRSTFIAGFPGETEEEFQTLLDFIAEAELD 338

Query: 361 QAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
           +   F YSP  G   +++   + + V+ ER     +             VG+ + VL+++
Sbjct: 339 RVGCFAYSPVEGATANDLPGALPDEVREERRARFMEVAERVSARGLQRKVGKSLRVLVDE 398

Query: 421 HGKEK--GKLVGRSPWLQSVVLNSKNHNI------GDIIKVRITDVKISTLYGEL 467
             ++   G+    +P +  +V  +           GD + V+IT      L+GE+
Sbjct: 399 VNQDGGIGRSSADAPEIDGLVYIAPPSKPYKRYKAGDFVSVKITGADGHDLWGEV 453


>gi|120435421|ref|YP_861107.1| hypothetical protein GFO_1066 [Gramella forsetii KT0803]
 gi|117577571|emb|CAL66040.1| conserved hypothetical protein [Gramella forsetii KT0803]
          Length = 448

 Score =  360 bits (923), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 129/444 (29%), Positives = 222/444 (50%), Gaps = 14/444 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++    + GC++N  ++  +   F ++G++RV+  + AD+ V+NTC + E A +      
Sbjct: 4   KKVAFYTLGCKLNFSETSTIARSFENEGFDRVDFSEKADIYVINTCSVTENADK------ 57

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R + +     K   +  ++  GC AQ + EE+      V++V+G    +++ + L    
Sbjct: 58  -RFKTIVKQAQKSNENAFMIAVGCYAQLKPEELA-EVNGVDLVLGATEKFKITDYLNDLL 115

Query: 145 FG-KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
              +R          +        G Y+      AFL +Q+GCD  CT+C +P  RGI  
Sbjct: 116 SHPERSRGIGEVHSCEINEADFYVGSYSIGDRTRAFLKVQDGCDYKCTYCTIPLARGISR 175

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK---CTFSDLLYSLSEIKGL 260
           S  L  V++ A ++ + G+ EI L G N+    GKG  G K    TF DL+ +L +++G+
Sbjct: 176 SDELQNVLNNAAEISEQGIKEIVLTGVNIG-DYGKGEFGNKKHEHTFLDLVKALDKVEGI 234

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            RLR ++  P  + +  I    D    +P+ H+P+QSGSD ILK M RR+ +  Y   + 
Sbjct: 235 ERLRISSIEPNLLKNETIDFVADSRTFVPHFHIPLQSGSDEILKLMRRRYLSDLYVNRVG 294

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           RIR+V PD  I  D IVGFPGET++ F  T + ++++  +    F YS R  TP + M E
Sbjct: 295 RIRAVMPDACIGVDVIVGFPGETEEHFLETYNFLNELDISYLHVFTYSERDNTPAATMEE 354

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440
            V   V+ +R   L+    +++ +F ++ +G    VL E   KE G + G +     V  
Sbjct: 355 VVPVKVRKKRSKMLRGLSAKKRRAFYESQLGNTGTVLFEGENKE-GYIHGFTENYVKVKA 413

Query: 441 NSKNHNIGDIIKVRITDVKISTLY 464
               + +  + K+++T++    L 
Sbjct: 414 PWNPNKVNTLQKIKLTEIDEDGLV 437


>gi|291531886|emb|CBK97471.1| SSU ribosomal protein S12P methylthiotransferase [Eubacterium
           siraeum 70/3]
          Length = 446

 Score =  360 bits (923), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 122/452 (26%), Positives = 212/452 (46%), Gaps = 20/452 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +  + S GC  N  D+  M       G++ VN    AD++++NTC   + A E+    + 
Sbjct: 6   KVGMVSLGCPKNQCDAELMLAKIAKAGFKIVNEAGLADVVIINTCGFIQSAKEEAIEEIM 65

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
              + KN    +G +  ++V GC+A+   +++    P ++ VVG      + E++     
Sbjct: 66  EAISRKN----DGINKKIIVTGCLAERYQKQMDEEFPEIDAVVGIAKNDDIVEIINSVML 121

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            +RVV     +    E   +            A+L I +GC   C++C +P  RG   SR
Sbjct: 122 DRRVVTFGDKLCHNMEGDKL-----QSTLPHYAYLRIADGCSNKCSYCAIPLIRGKMRSR 176

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            +  +++EA+K  +NGV E+ ++ Q+V A  G  L  +K    DLL  L +I G+  +R 
Sbjct: 177 KMENIIEEAKKFAENGVKELVIVAQDVTA-YGIDLY-KKYALPDLLKELCKIDGIKWIRL 234

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
              +P  M+D LI+     D ++ Y+ +P+Q  +  IL++M R       R++  ++R  
Sbjct: 235 LYCYPERMTDELIETIKTEDKVLNYIDIPIQHCNKEILRNMYRGGDEQSLRELFAKLRRE 294

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P + + +  I GFPGET++ F    + V+ I + +   F YS    TP + M +QVDE 
Sbjct: 295 IPGVVLRTTLITGFPGETEEQFSELAEFVNDIKFERLGCFAYSAEEDTPAAEMPDQVDEG 354

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVL- 440
            +  R   +  +   +   +    VG   EV+ E   +      GRS    P +  ++  
Sbjct: 355 ERQRRADIITSEQEIRMGEYYAGMVGNTYEVVCEGFDRYSDMYFGRSMHFAPEIDGMIYF 414

Query: 441 ----NSKNHNIGDIIKVRITDVKISTLYGELV 468
               +  +  IGD + V+ITDV  + L GE V
Sbjct: 415 TSAKDKSSLTIGDFVNVKITDVLENNLLGERV 446


>gi|126440905|ref|YP_001059197.1| putative tRNA modifying protein [Burkholderia pseudomallei 668]
 gi|238065309|sp|A3NA26|RIMO_BURP6 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|126220398|gb|ABN83904.1| MiaB-like protein [Burkholderia pseudomallei 668]
          Length = 463

 Score =  359 bits (922), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 124/479 (25%), Positives = 209/479 (43%), Gaps = 48/479 (10%)

Query: 16  QIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREK 75
           +   + +   +  + S GC   + DS ++     ++GYE   + D ADL+V+NTC   ++
Sbjct: 6   KSSGKPLAAPKVGMVSLGCPKALVDSEQIITQLRAEGYEISGTYDGADLVVVNTCGFIDE 65

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEE----ILRRSPIVNVVVGPQ 131
           A ++    +G                 V+V GC+   +       I    P V  V GP 
Sbjct: 66  AVQESLDAIGEALAENGK---------VIVTGCLGAKKSASGSGLIAEVHPKVLAVTGPH 116

Query: 132 TYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCT 191
               + + +                 D F  L    G     R   A+L I EGC+  C+
Sbjct: 117 AVGEVMQAVHSHLP---------KPHDPFVDLVPAAGIKLTPRHY-AYLKISEGCNHRCS 166

Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE-- 243
           FC++P  RG  +SR +++V+ EA  L  +GV E+ ++ Q+ +A+      R    +G   
Sbjct: 167 FCIIPSMRGELVSRPVAEVMLEAENLFKSGVKELLVISQDTSAYGVDVKYRTGFWNGRPL 226

Query: 244 KCTFSDLLYSLSEI----KGLVRLRYTTSHPRDMSDCLIKAHGDLD-VLMPYLHLPVQSG 298
           K   ++L+ +L E+       VRL Y   +P       + A G L   ++PYL +P Q  
Sbjct: 227 KTRMTELVGALGELAAQYGAWVRLHYVYPYPHVDEIIPMMAQGPLKGHVLPYLDVPFQHA 286

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
              +LK M R   A    + + + R + PD+ I S FI GFPGETD  F   +D +    
Sbjct: 287 HPEVLKRMKRPANAERVLERVQKWREICPDLTIRSTFIAGFPGETDAQFETLLDFIRDAE 346

Query: 359 YAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI 418
             +   F YSP  G   + +   + ++V+  R     +   E   +     +G+ ++VLI
Sbjct: 347 LDRVGCFAYSPVEGASANALDGALPDDVREARRARFMEVAEEVSAARIARKIGKTLKVLI 406

Query: 419 EKHGKEKGKLVGRS----PWLQSVVLN------SKNHNIGDIIKVRITDVKISTLYGEL 467
           ++   E G  +GR+    P +  VV        SK + +G+ + V+IT      L+GE+
Sbjct: 407 DEVNAEGG--IGRTAADAPEIDGVVYVEPAAKASKRYKVGEFVSVKITGADSHDLWGEV 463


>gi|325295204|ref|YP_004281718.1| MiaB-like tRNA modifying enzyme [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325065652|gb|ADY73659.1| MiaB-like tRNA modifying enzyme [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 437

 Score =  359 bits (922), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 129/436 (29%), Positives = 232/436 (53%), Gaps = 14/436 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +R    + GC+MN +++  ME+ F  +GY+ V+  ++AD+ ++NTC +   A  K    L
Sbjct: 2   KRVAFYTLGCKMNFHETAYMEEQFKKRGYKIVDFSEEADIYIVNTCTVTSVADSKSRKAL 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            + ++            LVV  GC ++   E++  +   V+ + G    +++ +++E+  
Sbjct: 62  RKAKS-------RNPKALVVATGCYSEVYPEKV-EKLEEVDFITGNVEKFQIVDIVEKRI 113

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            GK        +  + +   +    Y  K    AFL IQ+GC+ FC++C++P  RG  +S
Sbjct: 114 EGKLPRLYLRGIWKENQFYPLTIRHYEGK--TRAFLKIQQGCELFCSYCIIPKARGKMLS 171

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
               +V+++ ++LI++G  EI L G ++    G  L+ E  + + L+  + +I GL RLR
Sbjct: 172 EKPEKVLEQVKELINSGYKEIVLTGTHLGG-YGLDLE-ESLSLAKLIEKIVKIPGLYRLR 229

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
            ++  P + SD LI+       + P+LH+P+QSGSDRIL  M RR+T  +Y+ I++RI S
Sbjct: 230 ISSVEPIEFSDELIEVVTSSPKIAPHLHIPLQSGSDRILNLMKRRYTKRDYKTIVERILS 289

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             PDI I +D +VGFPGET++DF  T   + +  +     F YSPR GT    M + V  
Sbjct: 290 KNPDICIGTDVMVGFPGETEEDFEETKKFIKEFPFGYIHVFPYSPRKGTVAYKMKDSVSS 349

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
             K ER   L++  +E+ +++    + + +E L+  + ++   +V  S     +++    
Sbjct: 350 LEKKERAAILREIGKEKSLNYRKKFLDKELESLVLSNLEDGDSVV-LSGNYIRMIVK-DK 407

Query: 445 HNIGDIIKVRITDVKI 460
              G+I+KVR+ +V  
Sbjct: 408 LKPGEIVKVRLKEVGE 423


>gi|116749020|ref|YP_845707.1| MiaB-like tRNA modifying enzyme YliG [Syntrophobacter fumaroxidans
           MPOB]
 gi|238066613|sp|A0LIM0|RIMO_SYNFM RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|116698084|gb|ABK17272.1| MiaB-like tRNA modifying enzyme YliG [Syntrophobacter fumaroxidans
           MPOB]
          Length = 444

 Score =  359 bits (922), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 134/456 (29%), Positives = 215/456 (47%), Gaps = 24/456 (5%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           +V +   + S GC  N+ DS  M       GYE    +  A LI++NTC   E A  +  
Sbjct: 1   MVSKSAALVSLGCAKNLVDSESMVSQLIELGYEMTPEVSQAALILVNTCGFLESAVRESI 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             + ++   K S    G    +VVAGC+ Q  G+++L   P V++ +G    + L   + 
Sbjct: 61  DTVLQLAGYKAS----GSCEKLVVAGCMVQRYGKKLLGLLPEVDLFLGTSHCHALKSFIR 116

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNR---KRGVTAFLTIQEGCDKFCTFCVVPYT 198
               G        S   +      VD G +R   +   +A++ I EGC   C FC++P  
Sbjct: 117 DHEAG-------SSERLRIAFPDHVDNGADRHLVEGRSSAYVKIAEGCGNRCAFCLIPRL 169

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258
           RG   SR    ++ EA +L+  G  E+ ++ Q+  A+      GE+     LL SL EI+
Sbjct: 170 RGPYRSRRAVDILREAHRLVACGAKELNIVAQDTTAFGSDR--GEEHALVSLLESLEEIE 227

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
            L  +R   ++P  ++  LI+       ++PYL +P+Q    RIL SM R  T  +  +I
Sbjct: 228 KLEWVRLLYAYPDRITPELIRTMSQSRKVVPYLDIPLQHCVPRILASMGRSGT--DPERI 285

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           +D IRS  P +A+ +  IVGFPGET+ DF+A    V+  G+     F +SP  GT  + M
Sbjct: 286 VDAIRSGIPGVALRTSLIVGFPGETEADFQALTAFVECTGFEHLGVFAFSPEPGTRAARM 345

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLVGR----SP 433
            ++V  +V  ER   L +  R       ++ VG+++ VL+E    E    L GR    +P
Sbjct: 346 PDRVPPDVAQERRKVLLELQRGISRRRLESLVGRVLPVLVEGFHPETDLLLTGRLAVQAP 405

Query: 434 WLQS-VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
                V++       G+I++ R+T      +  EL+
Sbjct: 406 EADGTVLITDGIGTPGEIMRCRVTAAHDYDVEAELL 441


>gi|300703948|ref|YP_003745550.1| 2-methylthioadenine synthetase [Ralstonia solanacearum CFBP2957]
 gi|299071611|emb|CBJ42935.1| putative 2-methylthioadenine synthetase [Ralstonia solanacearum
           CFBP2957]
          Length = 459

 Score =  359 bits (922), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 120/477 (25%), Positives = 205/477 (42%), Gaps = 46/477 (9%)

Query: 15  SQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIRE 74
           S+   Q     R    S GC   + DS ++     ++GYE   +   ADL+V+NTC   +
Sbjct: 5   SESKTQADHNPRVGFVSLGCPKALVDSEQIITQLRAEGYEISGTYGGADLVVVNTCGFID 64

Query: 75  KAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAE----GEEILRRSPIVNVVVGP 130
           +A ++    +G                 V+V GC+   +     + I    P V  V GP
Sbjct: 65  EAVQESLDAIGEALAENGK---------VIVTGCLGAKKDATGNDIITSVHPKVLAVTGP 115

Query: 131 QTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190
                + E +                 D F  L +   G        A+L I EGC+  C
Sbjct: 116 HALGEVMEAVHTHLP---------KPHDPFIDL-VPPQGIKLTPKHYAYLKISEGCNHRC 165

Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE- 243
           +FC++P  RG  +SR +++V+ EA  L+  GV E+ ++ Q+ +A+      R    +G  
Sbjct: 166 SFCIIPSMRGDLVSRPVAEVMLEAENLLKAGVKELLVISQDTSAYGVDVKFRTGFWNGRP 225

Query: 244 -KCTFSDLLYSLSEI----KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
            K   ++L+ +L E+       VRL Y   +P       + A G    ++PYL +P+Q  
Sbjct: 226 LKTRMTELVGALGELAAQYGAWVRLHYVYPYPSVDEVMPLMAEG---KVLPYLDVPLQHA 282

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
              +LK M R   A +    I   R V P++ I S FI GFPGET+++F+  +D + +  
Sbjct: 283 HSEVLKRMKRPANAEKTLDRIRAWREVCPELTIRSTFIAGFPGETEEEFQTLLDFIGEAE 342

Query: 359 YAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI 418
             +   F YSP  G   +++   + + V+ ER     +             VG+ + VL+
Sbjct: 343 LDRVGCFAYSPVEGATANDLPGALPDEVREERRARFMEVAERVSARRLQRKVGKTLRVLV 402

Query: 419 EKHGKEK--GKLVGRSPWLQSVVLNSKNHNI------GDIIKVRITDVKISTLYGEL 467
           ++  ++   G+    +P +  +V  +           GD + V+IT      L+GE+
Sbjct: 403 DEVNQDGGIGRSSADAPEIDGLVYIAPPSKPYKRYKTGDFVSVKITGADGHDLWGEV 459


>gi|317008919|gb|ADU79499.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Helicobacter
           pylori India7]
          Length = 426

 Score =  359 bits (922), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 142/436 (32%), Positives = 232/436 (53%), Gaps = 21/436 (4%)

Query: 36  MNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRI 95
           MN  DS  +        Y+  +    ADLI++NTC +REK   K++S +G+   +K    
Sbjct: 1   MNSRDSEHLLSELSKLDYKETSDPKTADLILINTCSVREKPERKLFSEIGQFAKIKK--- 57

Query: 96  KEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYS 155
               +  + V GC A   G +IL+++P V+ V+G +   ++ +++ + +  +  +D D S
Sbjct: 58  ---PNAKIGVCGCTASHMGADILKKAPSVSFVLGARNVSKISQIIHKEKAVEVAIDYDES 114

Query: 156 VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEAR 215
                   +     + +K  + + L I  GCDK C +C+VP+TRG EIS  +  ++ EA 
Sbjct: 115 --------AYAFEFFEKKAQIRSLLNISIGCDKKCAYCIVPHTRGKEISIPMDLILKEAE 166

Query: 216 KLIDNGVCEITLLGQNVNAWRGKGLDGE--KCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
           KL +NG  E+ LLGQNVN   G    GE  K  FSDLL  LSEI G+ R+R+T+ HP  M
Sbjct: 167 KLANNGTKELMLLGQNVN-NYGVRFSGEHAKVDFSDLLDKLSEIPGIERIRFTSPHPLHM 225

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
           +D  ++       +   +H+P+QSGS  +LK M R ++   +   ++R++++ P++ IS+
Sbjct: 226 NDGFLERFAKNPKVCKSIHMPLQSGSSAVLKMMRRGYSKEWFLNRVERLKALVPEVGIST 285

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLC 393
           D IVGFP E+D DF  TM++++K+ +   +SF YSPR  T      E+V   V + RL  
Sbjct: 286 DIIVGFPNESDKDFEDTMEVLEKVRFDTLYSFIYSPRPFTEAGAWKERVPLEVSSSRLER 345

Query: 394 LQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV---GRSPWLQSVVLN-SKNHNIGD 449
           LQ + +E         VG+   VL+E   +   ++V   GRS   + + +   +  N G+
Sbjct: 346 LQNRHKEILEEKAKLEVGKTHVVLVENRREMDNQIVGFEGRSDTGKFIEVTCKEKRNPGE 405

Query: 450 IIKVRITDVKISTLYG 465
           ++KV I       L  
Sbjct: 406 LVKVEIISHSKGRLTA 421


>gi|218131133|ref|ZP_03459937.1| hypothetical protein BACEGG_02738 [Bacteroides eggerthii DSM 20697]
 gi|217986653|gb|EEC52987.1| hypothetical protein BACEGG_02738 [Bacteroides eggerthii DSM 20697]
          Length = 432

 Score =  359 bits (922), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 111/454 (24%), Positives = 199/454 (43%), Gaps = 35/454 (7%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEKVYS 82
           +   + + GC  N+ DS  +       G+   +  +     + V+NTC     A E+  +
Sbjct: 4   KTIDIITLGCSKNLVDSEHLMRQLEEAGFCVTHDAERPKGQIAVINTCGFIGDAKEESIN 63

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +      K      G    + V GC+++   +E+    P V+   G   +  L + L +
Sbjct: 64  MILEFAQAKEE----GNLEKLYVMGCLSERYLKELAIEIPQVDKFYGKFNWKELLQDLGK 119

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           A          Y  E   ER       Y       A+L I EGCD+ C++C +P   G  
Sbjct: 120 A----------YHEELHIERTLTTPKHY-------AYLKISEGCDRKCSYCAIPIITGRH 162

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           ISR + +++DE R L+  GV E  ++ Q +  + G  L  +K    +L+  +S++ G+  
Sbjct: 163 ISRPIEEILDEVRYLVARGVKEFQVIAQELT-YYGVDLY-KKQMLPELIERISDVPGVEW 220

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R   ++P      L +   +   +  Y+ + +Q  SD +L  M R  T  E  ++I++ 
Sbjct: 221 IRLHYAYPAHFPMDLFRVMRERSNVCKYMDIALQHISDNMLDKMRRHVTKEETYRLIEKF 280

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT-PGSNMLEQ 381
           R   P I + +  +VG PGET+ DF    + V K+ + +  +F YS   GT   ++  + 
Sbjct: 281 REEVPGIHLRTTLMVGHPGETEADFEELKEFVRKVRFDRMGAFAYSEEEGTYAAAHYEDA 340

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQS 437
           V   VK  RL  L    +      +   VG+ ++V+I++  +E    VGR+    P +  
Sbjct: 341 VPPEVKQARLDELMSIQQGISAELSAGKVGKRMKVIIDR--REGDYYVGRTEFDSPEVDP 398

Query: 438 VVLN---SKNHNIGDIIKVRITDVKISTLYGELV 468
            VL      +  IG+  +V I +     L+G ++
Sbjct: 399 EVLIECGDASLEIGNFYQVEIINSDDFDLFGRII 432


>gi|332879558|ref|ZP_08447253.1| ribosomal protein S12 methylthiotransferase RimO [Capnocytophaga
           sp. oral taxon 329 str. F0087]
 gi|332682524|gb|EGJ55426.1| ribosomal protein S12 methylthiotransferase RimO [Capnocytophaga
           sp. oral taxon 329 str. F0087]
          Length = 448

 Score =  359 bits (922), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 111/452 (24%), Positives = 201/452 (44%), Gaps = 35/452 (7%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEKVY 81
                V + GC  N+ DS ++     + GY+  +  D    ++ V+NTC     A E+  
Sbjct: 18  KNTIDVITLGCSKNLVDSEKLMRQLEANGYKVTHDTDRPQGEIAVINTCGFIGDAKEESI 77

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           + +      K      G    + V GC+++   +E+    P V+   G   +  L   L 
Sbjct: 78  NMILEFCQAKEE----GRLKKLFVMGCLSERYLKELGEEIPQVDKFYGKFDWNELLTDLG 133

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           +A          Y  E   ER       Y       A+L I EGCD+ C++C +P   G 
Sbjct: 134 KA----------YHQELSLERELTTPSHY-------AYLKISEGCDRRCSYCAIPIITGK 176

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
            +SR +  ++DE R L+  GV E  ++ Q +  + G  L   +    +L+  +++I G+ 
Sbjct: 177 HVSRPIEDILDEVRMLVSRGVKEFQVIAQELT-YYGLDLY-HRQMLPELIERMADIPGVD 234

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
            +R   ++P +    L +   +   +  Y+ + +Q  SD +L+ M+R  T  E   +I+R
Sbjct: 235 WIRLHYAYPANFPVDLFRVMREKKNVCKYMDIALQHISDNMLQRMHRHVTRQETYDLIER 294

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP-GSNMLE 380
            R   P + + +  +VG PGET++DF   +D V K+ + +  +F YS   GT    +  +
Sbjct: 295 FREEVPGVHLRTTLMVGHPGETEEDFNELLDFVRKVKFDRMGAFAYSEEEGTYSAEHYED 354

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQ 436
           ++    K  RL  L    ++         +G+I +V+I++   E    +GR+    P + 
Sbjct: 355 EIPFETKQARLDKLMALQQKISADLAAQKIGKIFKVIIDRS--EGEYYIGRTEFDSPEVD 412

Query: 437 SVV---LNSKNHNIGDIIKVRITDVKISTLYG 465
             V   ++    ++G   +V+ITD     LYG
Sbjct: 413 PEVLIPVSEGTLSLGTFYEVKITDADDFDLYG 444


>gi|255009413|ref|ZP_05281539.1| putative oxidoreductase [Bacteroides fragilis 3_1_12]
 gi|313147172|ref|ZP_07809365.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313135939|gb|EFR53299.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 432

 Score =  359 bits (922), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 111/454 (24%), Positives = 207/454 (45%), Gaps = 35/454 (7%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDA--DLIVLNTCHIREKAAEKVYS 82
           +   + + GC  N+ DS ++       GY+  +  +    ++ V+NTC     A E+  +
Sbjct: 4   KTIDIITLGCSKNLVDSEQLMRQLEEAGYDVTHDSEKPTGEIAVINTCGFIGDAKEESIN 63

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +      K      G    + V GC+++   +E+    P V+   G   +  L + L +
Sbjct: 64  MILEFAQEKEE----GNLEKLFVMGCLSERYLKELAIEIPQVDKFYGKFNWKELLQDLGK 119

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           A          Y  E   ER       Y       A+L I EGCD+ C++C +P   G  
Sbjct: 120 A----------YHDELHIERTLTTPKHY-------AYLKISEGCDRKCSYCAIPIITGRH 162

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR + +++DE R L+ NGV E  ++ Q +  + G  L  +K    +L+  +SEI G+  
Sbjct: 163 VSRPMEEILDEVRYLVSNGVKEFQVIAQELT-YYGVDLY-KKQMLPELIERVSEIPGVEW 220

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R   ++P    + L +   + D +  Y+ + +Q  SD +L+ M R  T  +  ++I++ 
Sbjct: 221 IRLHYAYPAHFPEDLFRVMRERDNVCKYMDIALQHISDNMLQRMRRHVTKEDTYRLIEQF 280

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT-PGSNMLEQ 381
           R   P I + +  +VG PGET++DF    + V K+ + +  +F YS   GT   +N  + 
Sbjct: 281 RKEVPGIHLRTTLMVGHPGETEEDFEELKEFVRKVRFDRMGAFAYSEEEGTYAAANYEDS 340

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQS 437
           + + VK  RL  L    +      + + VG  ++V+I++   E    VGR+    P +  
Sbjct: 341 IPQEVKQARLDELMDIQQGISAELSASKVGWQMKVIIDRI--EGDYYVGRTEFDSPEVDP 398

Query: 438 VVL---NSKNHNIGDIIKVRITDVKISTLYGELV 468
            VL      +  +G+  ++ + D     L+ +++
Sbjct: 399 EVLIKCEGDSLRVGNFYQIEVIDSDEFDLFAKVI 432


>gi|282890695|ref|ZP_06299215.1| hypothetical protein pah_c026o007 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281499288|gb|EFB41587.1| hypothetical protein pah_c026o007 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 430

 Score =  359 bits (921), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 130/454 (28%), Positives = 225/454 (49%), Gaps = 30/454 (6%)

Query: 18  VDQCIVPQRFF-VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA 76
           +++  +PQ+ F + + GC+ N Y+S   +D   + GY      ++AD+ ++NTC + E A
Sbjct: 1   MNESSLPQKTFKIATLGCRTNQYESQAYQDQLIALGYRPAREDEEADVCIVNTCTVTETA 60

Query: 77  AEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL 136
             +    + ++        KE     +VV GC A+    +I      V  VV  +     
Sbjct: 61  DLQSKHDVRQL-------SKENPQAKIVVTGCAAEQN-AQIFASIKGVEHVVLNKEKD-- 110

Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
                      ++V T +  ED  E         N      AF+ +Q+GC++FCT+C++P
Sbjct: 111 -----------QLVQTLFPEEDVPEF-----SIKNFDAHTRAFVKVQDGCNEFCTYCIIP 154

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC-TFSDLLYSLS 255
           Y RG   SR++ +++DE + LI NG  EI L G N+  + G  ++G       DL+ ++ 
Sbjct: 155 YVRGRSRSRTIPEIIDEVKDLISNGFKEIVLTGINIGDFDGNPVEGMPPHRLVDLVRAVD 214

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
           ++ GL RLR ++  P ++ D L  A  +       +H+ +QSGS+ +LK MNR++T   +
Sbjct: 215 QVPGLKRLRISSIDPDEIDDELADAVLNGAKTCHSMHIVLQSGSNVVLKRMNRKYTRQIF 274

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
              IDR+R   P+   ++D IVGFPGET+ DF  TM+++ ++ +A+   F YS R  T  
Sbjct: 275 LNTIDRLRQADPNFTFTTDIIVGFPGETETDFAETMEIMQEVQFAKVHMFPYSERKRTRA 334

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSPW 434
           + M  +V  +V  +R   L +    Q     +  VGQ + VL E  H    G++ G +  
Sbjct: 335 ALMPNKVPPDVIKKRKQELLRSAEHQAYLLRERFVGQRMTVLTESGHISRPGEISGHTEN 394

Query: 435 LQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
             +V +   +    ++I+V + +     L G+ V
Sbjct: 395 FLNVWITG-DFQSNELIEVDLVENTPQGLIGKFV 427


>gi|303290697|ref|XP_003064635.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226453661|gb|EEH50969.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 530

 Score =  359 bits (921), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 149/496 (30%), Positives = 238/496 (47%), Gaps = 50/496 (10%)

Query: 18  VDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA 77
            D     +  F+++YGCQMNV DS  +  +  S  Y  V+ +D AD +++NTC IR+ A 
Sbjct: 18  PDDDQRRRTAFIETYGCQMNVSDSEIVASVLQSNRYVVVDDVDAADAVLVNTCAIRDGAE 77

Query: 78  EKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLP 137
            K++    R+R LK          +V V GC+ +    ++L    + ++V GP  Y  LP
Sbjct: 78  AKIWH---RLRQLKREWKDAKNAPVVGVLGCMGERLKHKLLETDGLADLVAGPDAYRDLP 134

Query: 138 ELLERARFG-------KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190
            L++ AR         +  ++     ++ +  +  V        G +AF++I  GC+  C
Sbjct: 135 RLIDVARGAWSGGGSVEAAINVQLRRDETYADVKPVRANDA---GPSAFVSIMRGCNNMC 191

Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW--------------- 235
            FC+VP+TRG E SR  + +VDE ++L+D G  E+ LLGQNVN++               
Sbjct: 192 AFCIVPFTRGRERSRPRASIVDEVKRLVDEGRKEVVLLGQNVNSYADASGAFYLTLVPIR 251

Query: 236 ---------RGKGLDGEKCT-FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLD 285
                       G   E    F++LL  ++ +   +R+R+T+ HP+D  D ++       
Sbjct: 252 PRSRGFKSVYKPGARRENALLFAELLDEVAGVDPEMRVRFTSPHPKDFPDDVLNVIASRP 311

Query: 286 VLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIV---GFPGE 342
            +   LH+P QSGS  +L+ M R +T   Y  ++ R R   P +A+SSDFI    GF GE
Sbjct: 312 NVCKQLHMPAQSGSTTVLERMRRGYTREAYVDLVRRARERVPGVAVSSDFIRRVFGFCGE 371

Query: 343 TDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN-MLEQVDENVKAERLLCLQKKLREQ 401
           T+D+   T+ L++ + Y QAF F YS R  T  S  +++ V E  K  RL  +    R  
Sbjct: 372 TEDEHADTVSLMNLMRYEQAFMFAYSMREKTAASRHLVDDVPEETKKRRLAEVIAAQRRG 431

Query: 402 QVSFNDACVGQIIEVLIEKHGKEKG-KLVGRSPWLQSVVLNSK-------NHNIGDIIKV 453
               N   +G    VLIE   K    +  GR+   + V++ +        +   G+ + V
Sbjct: 432 AEERNADEIGVTHLVLIEGTSKRSDAEYTGRTCTGKRVIVTAARTREADVDVTPGEYVAV 491

Query: 454 RITDVKISTLYGELVV 469
           R+     STL+G  V 
Sbjct: 492 RVEKANASTLFGSPVA 507


>gi|24375559|ref|NP_719602.1| MiaB-like putative RNA modifying enzyme YliG [Shewanella oneidensis
           MR-1]
 gi|81459191|sp|Q8EA37|RIMO_SHEON RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|24350441|gb|AAN57046.1|AE015838_8 MiaB-like putative RNA modifying enzyme YliG [Shewanella oneidensis
           MR-1]
          Length = 481

 Score =  359 bits (921), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 137/476 (28%), Positives = 209/476 (43%), Gaps = 36/476 (7%)

Query: 6   KLIGVAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLI 65
           K +  A   S          R    S GC  N+ DS R+       GYE  NS D+ADL+
Sbjct: 19  KTLEAASADSVNTGNVATGNRIGFVSLGCPKNLVDSERILTQLRIDGYEVTNSYDNADLV 78

Query: 66  VLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVN 125
           ++NTC   + A E+    +                  V+V GC+  A+  +I    P V 
Sbjct: 79  IVNTCGFIDAAVEESLDAVREALEENGK---------VIVTGCLG-AKENQIREVHPDVL 128

Query: 126 VVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEG 185
            + GP +Y  + + + +               + F  L I   G        A+L I EG
Sbjct: 129 EITGPHSYEAVLKHVHKY--------VPKPEHNPFTSL-IPQTGVKLTPKHYAYLKISEG 179

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE-- 243
           CD  CTFC++P  RG   SR    V+DEA++L++ GV EI ++ Q+ +A  GK   G   
Sbjct: 180 CDNRCTFCIIPALRGDLDSRGAGSVLDEAKRLVEAGVQEILVVSQDTSA-YGKDKGGRTD 238

Query: 244 -------KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQ 296
                  K   + L   L ++   VRL Y   +P       + A G   +++PYL +P+Q
Sbjct: 239 FWNGMPVKQDITSLARQLGKMGAWVRLHYIYPYPWVDDLIPLMAEG---LILPYLDIPMQ 295

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
             S RILK M R        + I R R + PD+ I S FIVGFPGET++DF   +D + +
Sbjct: 296 HASPRILKMMKRPGRVDRQLEAIQRWREICPDLVIRSTFIVGFPGETEEDFEMLLDFLRE 355

Query: 357 IGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEV 416
               +   FKYS   G   + + E + E VK +R     +   E         VG+ +++
Sbjct: 356 ARLDRVGCFKYSEVEGAVANTIAELISEEVKEDRYHRFMEVQAEISAERLARFVGRTMDI 415

Query: 417 LIEKHGKEK--GKLVGRSPWLQSVVLNSK--NHNIGDIIKVRITDVKISTLYGELV 468
           LI+   +E   G+    +P +  +V  +       G +++  IT      L+ ELV
Sbjct: 416 LIDDVDEEGAIGRSFADAPEIDGMVFINGETELEPGMLVRAVITHSDEHDLWAELV 471


>gi|123965349|ref|YP_001010430.1| Fe-S oxidoreductase [Prochlorococcus marinus str. MIT 9515]
 gi|238066582|sp|A2BU62|RIMO_PROM5 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|123199715|gb|ABM71323.1| possible Fe-S oxidoreductase [Prochlorococcus marinus str. MIT
           9515]
          Length = 454

 Score =  359 bits (921), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 130/453 (28%), Positives = 219/453 (48%), Gaps = 26/453 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +      GC+ N+ D+  M+ +   +GYE  N+++DA ++V+NTC   E A E+    + 
Sbjct: 15  KVAFSHVGCEKNLVDTEHMQGLLDKEGYEVGNNLEDAKVVVVNTCSFIETAREESIRKIL 74

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                            V+VAGC+AQ   EE+L+  P +  +VG   Y ++ +++ R   
Sbjct: 75  EF---------TDQGKQVIVAGCMAQHFKEELLKEIPEIKALVGTGDYQKIAKVMNRVEK 125

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G+ +V+    V +      I      +K    A+L I EGCD  C FC++P  RG + SR
Sbjct: 126 GE-IVNEVSKVPEFIADEKIPRLIDQKK--FVAYLRIAEGCDYNCAFCIIPKLRGPQRSR 182

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           ++  ++ EA  L + G+ EI L+ Q +    G+ + G K + + LL  LS++  +  +R 
Sbjct: 183 TIESIILEATNLANQGIQEIILISQ-ITTNYGQDIYG-KPSLARLLKELSKV-SVPWIRI 239

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
             ++P  ++D +IKA  D + ++PY  LP+Q     +LKSMNR   A     I+ +IR  
Sbjct: 240 HYAYPTGLTDEVIKAFKDSNNIVPYFDLPLQHSHSDVLKSMNRPWQASLNESILSKIRDQ 299

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P   + +  IVGFPGE    F   +D + K  +     F +SP  GT   ++  +V   
Sbjct: 300 IPSAVLRTSLIVGFPGEEQKHFLHLLDFLHKHKFDHVGVFIFSPEEGTSAFDLPNRVPSE 359

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVLN 441
           +   R   +    +      N   VG  ++VL+EK  K   +L+GRS    P +   V+ 
Sbjct: 360 IADARKDNIMSIQQNISKKKNQLYVGTKVKVLVEKISK-NNELIGRSYHFAPEIDGNVIL 418

Query: 442 S------KNHNIGDIIKVRITDVKISTLYGELV 468
           S      +N+ +G  ++  I       LYGE++
Sbjct: 419 SIKKNVIENNYVGKFVEANICFADEYDLYGEVI 451


>gi|288940768|ref|YP_003443008.1| MiaB-like tRNA modifying enzyme YliG [Allochromatium vinosum DSM
           180]
 gi|288896140|gb|ADC61976.1| MiaB-like tRNA modifying enzyme YliG [Allochromatium vinosum DSM
           180]
          Length = 454

 Score =  359 bits (921), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 126/459 (27%), Positives = 208/459 (45%), Gaps = 36/459 (7%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + P+  FV S GC     DS R+     ++GY+   +  +ADL+++NTC   + A ++  
Sbjct: 16  LAPRIGFV-SLGCPKATVDSERILTRLRAEGYQLQPTHAEADLVIVNTCGFIDSAVDESL 74

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             +    +          +  V+V GC+     E +  R P V  V GP     +   + 
Sbjct: 75  DAIAEALD---------ENGRVIVTGCLGAR-AELVRERHPEVLAVTGPHALEEVMAAVH 124

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
                        +  D F  L I   G        A+L I EGC+  C FC++P  RG 
Sbjct: 125 AHLP---------APHDPFTSL-IPPQGVRLTPSHYAYLKISEGCNHRCRFCIIPSLRGD 174

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNA------WRGKGLDGE--KCTFSDLLYS 253
            +SR + +++DEA +L+++GV E+ ++ Q+ +A       R     G   +   ++L  +
Sbjct: 175 LVSRPIGEILDEAGRLVESGVRELLVVSQDTSAYGLDLGHRPDFWGGRPLRTHITELART 234

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
           L E+   +RL Y   +P      LI    D  V++PYL +P+Q GS+ +L++M R     
Sbjct: 235 LGELPAWIRLHYVYPYPHVD--ELIPLMAD-GVILPYLDMPLQHGSESVLRAMRRPAATE 291

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
           +    + R R+  PD+ + S FIVGFPGET+DDF   +D + +    +   F YS   G 
Sbjct: 292 KVLDRLARWRADCPDLVLRSTFIVGFPGETEDDFERLLDFLREARLDRVGCFPYSAVEGA 351

Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGR 431
             + +   V E VK ERL                A VGQ + VL++   ++    +  G 
Sbjct: 352 AANELPNPVPEAVKQERLERFMDVQAGISREKLAARVGQRLTVLVDAVEEDAIIARSYGD 411

Query: 432 SPWLQSVVLNSK--NHNIGDIIKVRITDVKISTLYGELV 468
           +P +   V+       + GD I+V IT+     L+ + V
Sbjct: 412 APEIDGEVIIEGAWEIDPGDFIEVVITEAGEHDLWAQPV 450


>gi|189461331|ref|ZP_03010116.1| hypothetical protein BACCOP_01981 [Bacteroides coprocola DSM 17136]
 gi|189431860|gb|EDV00845.1| hypothetical protein BACCOP_01981 [Bacteroides coprocola DSM 17136]
          Length = 432

 Score =  359 bits (921), Expect = 7e-97,   Method: Composition-based stats.
 Identities = 117/457 (25%), Positives = 204/457 (44%), Gaps = 35/457 (7%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEK 79
           +      + + GC  N+ DS ++     + GY+  +  +    ++ V+NTC     A E+
Sbjct: 1   MRKNTIDIITLGCSKNLVDSEKLMKQLEANGYKVTHDSENPQGEIAVINTCGFIGDAKEE 60

Query: 80  VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL 139
             + +      K      G    + V GC+++   +E+    P V+   G   +    EL
Sbjct: 61  SINMILEFCQAKEE----GRLKKLYVMGCLSERYLKELQVEIPQVDKFYGKFNWN---EL 113

Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           L  A  GK      Y  +   ER       Y       A+L I EGCD+ C++C +P   
Sbjct: 114 L--ADLGKT-----YHSDFAIERHLTTPKHY-------AYLKISEGCDRKCSYCAIPIIT 159

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G  +SR + +++DE R L+  GV E  ++ Q +  + G  L  +K    +L+  ++EI G
Sbjct: 160 GKHVSRPMEEILDEVRLLVSEGVKEFQVIAQELT-YYGVDLY-KKQMLPELIERMAEIPG 217

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           +  +R   ++P      L +   + D +  Y+ + +Q  SD +L  M R  T  E  Q+I
Sbjct: 218 VKWIRLHYAYPAHFPKELFRVMREHDNVCKYMDIALQHISDNMLSKMRRHVTKEETYQLI 277

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN-M 378
           +  R   P I + +  +VG PGETD DF    + V K  + +  +F YS   GT  +   
Sbjct: 278 EEFRKEVPGIHLRTTLMVGHPGETDQDFEELKEFVRKARFDRMGAFAYSEEEGTYSAKHY 337

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PW 434
            + + ++VK +RL  L +  +E     +   +G+  +V+I++  KE    +GR+    P 
Sbjct: 338 KDDIPQDVKQKRLDELMEIQQEISNELSHNKIGKEFKVIIDR--KEGDYYIGRTEFDSPE 395

Query: 435 LQSVVLNSKNHNI---GDIIKVRITDVKISTLYGELV 468
           +   VL      +   G   +V++ D     LY  LV
Sbjct: 396 VDPEVLIKDEGRMLRTGSFHQVKVYDADDFDLYATLV 432


>gi|33239573|ref|NP_874515.1| 2-methylthioadenine synthetase [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
 gi|81665118|sp|Q7VE92|RIMO_PROMA RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|33237098|gb|AAP99167.1| 2-methylthioadenine synthetase [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
          Length = 434

 Score =  359 bits (921), Expect = 7e-97,   Method: Composition-based stats.
 Identities = 128/448 (28%), Positives = 210/448 (46%), Gaps = 27/448 (6%)

Query: 32  YGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA-AEKVYSFLGRIRNL 90
            GC+ N+ D+  M  +    GY    +  +A L+V+NTC   + A  E V   +G     
Sbjct: 3   LGCEKNLVDTEHMMGLLDQGGYSISTNPSEASLVVVNTCSFIQDAREESVRVLVGLAEQD 62

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
           K           +++AGC+AQ   EE+L+  P    ++G   Y  +  +L+R   G+ V 
Sbjct: 63  KE----------IIIAGCLAQHFQEELLQSIPEAKAIIGTGDYQNILNVLQRIEQGEIVN 112

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
               +     +        +       A+L I EGCD  C FC++P  RG++ SRS+  +
Sbjct: 113 QVSNNPTFVGDEKLP---RFRTTGKAVAYLKIAEGCDYSCAFCIIPKLRGMQRSRSIESI 169

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270
           V EA +L   GV E+ L+ Q +    G  L G  C  +DLL  L +++ +  +R   ++P
Sbjct: 170 VAEANQLAKQGVKELILISQ-ITTNYGLDLYGRPC-LADLLRELGDVE-IPWIRVHYAYP 226

Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330
             ++  +IKA  ++  L+PYL LP+Q     +L+ MNR         ++DRIRS  PD  
Sbjct: 227 TGLTSEVIKAFREVPNLLPYLDLPLQHSHPDVLRLMNRPWQLDLNASLLDRIRSELPDAI 286

Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER 390
             +  IVGFPGET++ F   +  V    +     F +S   GT  +++  Q+  +V   R
Sbjct: 287 FRTSLIVGFPGETEEHFNHLVSFVQTQQFDHIGVFTFSSEAGTKAASLANQIPFSVAEAR 346

Query: 391 LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVV---LN-- 441
              +    +      N   +G+ ++VLIE+  K+  + VGR    SP +   V   +N  
Sbjct: 347 KDKIISIQQPIAELKNQNWIGRTVDVLIEREDKDSAEFVGRCARFSPEVDGFVRLQINNT 406

Query: 442 -SKNHNIGDIIKVRITDVKISTLYGELV 468
            +   NIG +    IT   +  L G++V
Sbjct: 407 FTNQLNIGMMTPALITGADLYDLTGQVV 434


>gi|325971245|ref|YP_004247436.1| RNA modification enzyme, MiaB family [Spirochaeta sp. Buddy]
 gi|324026483|gb|ADY13242.1| RNA modification enzyme, MiaB family [Spirochaeta sp. Buddy]
          Length = 433

 Score =  359 bits (921), Expect = 7e-97,   Method: Composition-based stats.
 Identities = 139/442 (31%), Positives = 234/442 (52%), Gaps = 24/442 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
            +++++YGCQMNV +S  +E      G    +  +DAD  +LNTC +R+ A  +++  LG
Sbjct: 4   TYWLETYGCQMNVAESNALELQLKGAGLVPASRAEDADCAILNTCTVRKSADNRIWGRLG 63

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
               +K+        L ++V GC+A+   E++   +P V+ V+G                
Sbjct: 64  YFTYIKSKHP-----LTLIVTGCMAERLQEDLKDEAPQVDYVIGTNDK------------ 106

Query: 146 GKRVVDTDYSVEDKFERLS---IVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            +R+V+   SV+ K +  S        Y ++   ++++ I  GC+ FC +C+VPY RG E
Sbjct: 107 -QRIVNILTSVDGKMDEHSQSYTFGNSYYQEGEFSSYIPIMNGCNNFCAYCIVPYVRGRE 165

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG-LV 261
           +SR +  ++ E   L   GV E+TLLGQNVN++     DG    F  LL  L   K  + 
Sbjct: 166 VSRPVDDILAELAFLDSKGVKEVTLLGQNVNSYHFVEADGRVINFPKLLKKLCSQKNHIK 225

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
            +R+ + HP+D S  LI+   +   +  +LH+P+QSGS RIL  MNR+++  ++  +ID 
Sbjct: 226 WIRFDSPHPKDFSQELIQVIQEEKQIARHLHIPLQSGSSRILSLMNRKYSRSQFLTLIDD 285

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R   PDI  S+D +VGFP ET+++++ T  ++  +   +AF + Y+PR GT    M EQ
Sbjct: 286 LRRAIPDITFSTDVMVGFPSETEEEYQETRSVLAHMQCLEAFMYYYNPREGTKAVEMNEQ 345

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440
           +DE  K  RL  L +             V  ++EVL+ +  K   K ++G++   + V  
Sbjct: 346 IDEEEKGRRLQSLIEFQHAIFAQQKQKRVQSVVEVLVTQVSKHDSKSMLGKTEHNEMVAF 405

Query: 441 NSKNHNIGDIIKVRITDVKIST 462
            S    +G+II V++T +  +T
Sbjct: 406 PST-AKLGEIITVQLTSLNGNT 426


>gi|117924969|ref|YP_865586.1| MiaB-like tRNA modifying enzyme YliG [Magnetococcus sp. MC-1]
 gi|238066384|sp|A0L887|RIMO_MAGSM RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|117608725|gb|ABK44180.1| SSU ribosomal protein S12P methylthiotransferase [Magnetococcus sp.
           MC-1]
          Length = 487

 Score =  359 bits (921), Expect = 7e-97,   Method: Composition-based stats.
 Identities = 125/449 (27%), Positives = 207/449 (46%), Gaps = 17/449 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
              V S GC  N  DS +M   F  +GY  V    +ADL+V+NTC     A  +    + 
Sbjct: 38  TVGVISLGCSKNTVDSEQMLGRFVREGYLLVADPLEADLLVVNTCGFIADAERESRESID 97

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            + ++K           ++V GC++Q  G ++L   P +++++G   Y  L  LLE    
Sbjct: 98  EMAHIKQLY----PHKKLIVTGCLSQRYGAKLLEDHPQIDLLLGAGHYDTLIPLLEA--- 150

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
             +   T   V +     S            +A++ I EGC+  CTFC++P  RG   SR
Sbjct: 151 --KAPQTVDHVTEPDAAASHDVPRLITTGESSAYVKIAEGCNNSCTFCIIPKLRGPFRSR 208

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           +L  +  E   L D G  E+ L+ Q+   W G+ L  ++ + ++LL  +        +R 
Sbjct: 209 TLDDIAAEVALLTDEGCHELILVSQDTT-WYGRDLP-QRSSLTELLQRILASCEAPWIRM 266

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
              +P  +   L++     D L+PY  +P+Q    ++LK M R       RQ++  +R+ 
Sbjct: 267 LYLYPTLVKKELLQLIAREDRLLPYFDIPLQHADSQVLKRMQRSERLETVRQLVKDVRAS 326

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            PD  + S FIVGFPGE++ +F+  +D + +        F YS   GT   ++ ++VD  
Sbjct: 327 VPDAILRSTFIVGFPGESEAEFQTLLDFIQESQLDWVGVFTYSDEQGTAAYDLPDKVDAR 386

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVVLN 441
           V   R   L    +    +     VG+I+ VL+E + +E    VGR    +P +   VL 
Sbjct: 387 VAEARRDQLMALQQPITSARLQRWVGEIVAVLVESYDEEHACFVGRFWAQAPEVDGQVLI 446

Query: 442 --SKNHNIGDIIKVRITDVKISTLYGELV 468
             ++   +G  + V IT V    LYG+L+
Sbjct: 447 QCNEELEMGIFVPVAITQVLGYDLYGDLL 475


>gi|168181641|ref|ZP_02616305.1| RNA modification enzyme, MiaB family [Clostridium botulinum Bf]
 gi|237796408|ref|YP_002863960.1| MiaB family RNA modification protein [Clostridium botulinum Ba4
           str. 657]
 gi|182675137|gb|EDT87098.1| RNA modification enzyme, MiaB family [Clostridium botulinum Bf]
 gi|229261767|gb|ACQ52800.1| RNA modification enzyme, MiaB family [Clostridium botulinum Ba4
           str. 657]
          Length = 432

 Score =  359 bits (921), Expect = 7e-97,   Method: Composition-based stats.
 Identities = 133/444 (29%), Positives = 231/444 (52%), Gaps = 16/444 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    + GC++NVY++  M + F  QGYE V+  + AD+ V+NTC +     +K    + 
Sbjct: 2   KVAFSTLGCRVNVYETEAMTEKFIKQGYEIVDFNEVADVYVINTCTVTNMGDKKSRQMIS 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R R       ++    ++ V GC +Q   EE+  +   V+VV+G +    +   + RA  
Sbjct: 62  RGR-------RQNSKAIIAVVGCYSQIAPEEV-SKIDGVDVVLGTRNKGDIVYWVNRAME 113

Query: 146 GKRVVDTDYSV--EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            K  V     V    +FE L+I +     +    AFL IQ+GC++FC++C++P+ RG   
Sbjct: 114 EKNQVIEIKDVLRNKEFEELNIEEY----RDKTRAFLKIQDGCNRFCSYCLIPFARGAVC 169

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           S+   ++++E  KL  +G  EI L G ++ A  G  L+G K   + +L  + +++G+ R+
Sbjct: 170 SKKPEKIMEEVEKLSKHGFKEIILSGIDI-ASYGFDLEG-KYNLTSILEEIDKVEGIERI 227

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R  +  P   ++  I     L    P+ HL +QSG +  LK MNR++T  +Y++I+  +R
Sbjct: 228 RIGSIDPTFFTEEEIIGISKLKRFCPHFHLSLQSGCNETLKRMNRKYTVEQYKEIVHNLR 287

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           +    ++I++D IVGFPGET+++F  T + +  I  ++   FK+SPR GT    M  QVD
Sbjct: 288 TNIESVSITTDIIVGFPGETEEEFNKTYEFLKGIKLSKMHVFKFSPRKGTRAEEMKNQVD 347

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
             +K ER   +    ++ +  F +  + + + VL E+  KEKG   G +P    +   S 
Sbjct: 348 GKIKEERSNKIINLDKDLEKEFMNKFIEKEMPVLYEQETKEKGIFEGYTPNYIKIYSKSS 407

Query: 444 NHNIGDIIKVRITDVKISTLYGEL 467
               G+II   + +V    + GE+
Sbjct: 408 KDITGEIINTTLKEVSKDFIKGEI 431


>gi|332882828|ref|ZP_08450439.1| tRNA methylthiotransferase YqeV [Capnocytophaga sp. oral taxon 329
           str. F0087]
 gi|332679330|gb|EGJ52316.1| tRNA methylthiotransferase YqeV [Capnocytophaga sp. oral taxon 329
           str. F0087]
          Length = 435

 Score =  359 bits (921), Expect = 7e-97,   Method: Composition-based stats.
 Identities = 125/438 (28%), Positives = 213/438 (48%), Gaps = 17/438 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++    + GC++N  ++  +   F   GY RV+  D AD+ V+NTC + E A +      
Sbjct: 2   KKVAFYTLGCKLNFAETSTIARSFEEDGYIRVDFDDPADIYVINTCSVTENADK------ 55

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            + + +    +K      +   GC AQ + EE+      V++V+G +  + + + ++   
Sbjct: 56  -QFKQIVRKALKTNPKAFLAAVGCYAQLKPEELASVD-GVDLVLGAKEKFNITQYIDDLT 113

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
                V     + +         G Y+      AFL +Q+GCD  CT+C +P  RGI  S
Sbjct: 114 KNNEGVVHSCEIAET----DFYVGSYSIGDRTRAFLKVQDGCDYKCTYCTIPMARGISRS 169

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK---CTFSDLLYSLSEIKGLV 261
            ++  ++  A+K+ D G+ EI L G N+    GKG  G K    TF +L+ +L +++G+ 
Sbjct: 170 DTIENILSNAKKISDKGIKEIVLTGVNIG-DYGKGEFGNKKHEHTFLELVEALDKVEGIE 228

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           RLR ++  P  + D  I      +  +P+ H+P+QSGS+ ILK M RR+    Y   + +
Sbjct: 229 RLRISSIEPNLIKDETIDFIAQSNSFVPHFHIPLQSGSNEILKKMKRRYLRELYVSRVAK 288

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           IR V PD  I  D IVGFPGETD+ F  T   ++ +  +    F YS R  T    M   
Sbjct: 289 IREVMPDACIGVDVIVGFPGETDELFLETYYFLNDLDISYLHVFTYSERDNTEAVLMDGV 348

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           V + V+A+R   L+    +++ +F ++ +G+   VL E   K+ G + G +     V   
Sbjct: 349 VPDEVRAKRSKMLRGLSAKKRNAFYESQLGKEKTVLFESDNKQ-GYIHGFTENYVKVKAP 407

Query: 442 SKNHNIGDIIKVRITDVK 459
                +  + KV++T + 
Sbjct: 408 WDPALVNTLHKVKLTKID 425


>gi|330959246|gb|EGH59506.1| ribosomal protein S12 methylthiotransferase [Pseudomonas syringae
           pv. maculicola str. ES4326]
          Length = 447

 Score =  359 bits (921), Expect = 7e-97,   Method: Composition-based stats.
 Identities = 133/467 (28%), Positives = 214/467 (45%), Gaps = 37/467 (7%)

Query: 17  IVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA 76
            V     P+  FV S GC   + DS R+      +GYE V + +DAD++V+NTC   + A
Sbjct: 3   TVTTPSAPKVGFV-SLGCPKALVDSERILTQLRMEGYEVVATYEDADVVVVNTCGFIDTA 61

Query: 77  AEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL 136
             +    +G         IKE G   V+V GC+   +   I    P V  V GPQ Y ++
Sbjct: 62  KAESLEVIGEA-------IKENG--KVIVTGCMG-VDASVIRNVHPSVLSVTGPQQYEQV 111

Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
              +      +   +    +        +   G        A+L I EGC+  C+FC++P
Sbjct: 112 VNAVHDVVPPRHDHNPLIDL--------VPPQGIKLTPRHYAYLKISEGCNHSCSFCIIP 163

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFS 248
             RG  +SR +  V+DEA++L+ +GV E+ ++ Q+ +A+      R    DG+  K   +
Sbjct: 164 SMRGKLVSRPVGDVLDEAKRLVKSGVKELLVISQDTSAYGVDVKYRTGFWDGQPIKTRMT 223

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
           +L  +L  +   VRL Y   +P       + A G    ++PYL +P Q  S +ILK M R
Sbjct: 224 ELCQALGSMGVWVRLHYVYPYPHVDELIPLMAAG---KILPYLDIPFQHASPKILKLMKR 280

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
                +    I   R   PD+ I S FIVGFPGET++DF+  +D + +    +   F+YS
Sbjct: 281 PAFEDKTLARIKNWREQCPDLIIRSTFIVGFPGETEEDFQYLLDWLTEAQLDRVGCFQYS 340

Query: 369 PRLGTPGSNMLEQ-VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-- 425
           P  G P + +    V ++VK +R        +    +     +G+ IEVLI++  +    
Sbjct: 341 PVEGAPANLLDAAIVPDDVKQDRWDRFMAHQQAISAARLQMKIGKEIEVLIDEVDERGAV 400

Query: 426 GKLVGRSPWLQSVVL----NSKNHNIGDIIKVRITDVKISTLYGELV 468
           G+    +P +   V     +      GD I  R+TD     L+ E++
Sbjct: 401 GRCFFDAPEIDGNVFIGLEDGSTVQPGDKIMCRVTDADEYDLWAEVL 447


>gi|312959323|ref|ZP_07773840.1| hypothetical protein PFWH6_1221 [Pseudomonas fluorescens WH6]
 gi|311286040|gb|EFQ64604.1| hypothetical protein PFWH6_1221 [Pseudomonas fluorescens WH6]
          Length = 446

 Score =  358 bits (920), Expect = 8e-97,   Method: Composition-based stats.
 Identities = 128/454 (28%), Positives = 214/454 (47%), Gaps = 34/454 (7%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC   + DS R+      +GY+ V++  DAD++V+NTC   + A  +    +G
Sbjct: 11  KVGFVSLGCPKALVDSERILTQLRMEGYDVVSTYQDADVVVVNTCGFIDSAKAESLEVIG 70

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                    IKE G   V+V GC+   EG  I    P V  V GPQ Y ++   +     
Sbjct: 71  EA-------IKENG--KVIVTGCMGVEEGN-IRNVHPSVLAVTGPQQYEQVVNAVHDVVP 120

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            ++  +    +        +   G        A+L I EGC+  C+FC++P  RG  +SR
Sbjct: 121 PRQDHNPLIDL--------VPPQGIKLTPRHYAYLKISEGCNHSCSFCIIPSMRGKLVSR 172

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYSLSEI 257
            +  V+DEA++L+ +GV E+ ++ Q+ +A+      R    +G   K   ++L  +LS +
Sbjct: 173 PVGDVLDEAQRLVKSGVKELLVISQDTSAYGVDVKYRTGFWNGAPVKTRMTELCEALSSL 232

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
              VRL Y   +P       + A G    ++PYL +P Q  S ++LK+M R     +   
Sbjct: 233 GVWVRLHYVYPYPHVDELIPLMAAG---KILPYLDIPFQHASPKVLKAMKRPAFEDKTLA 289

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
            I   R + PD+ I S FIVGFPGET++DF+  +D + +    +   F+YSP  G P + 
Sbjct: 290 RIKNWREICPDLIIRSTFIVGFPGETEEDFQYLLDWLTEAQLDRVGCFQYSPVEGAPANL 349

Query: 378 M-LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPW 434
           + L  V ++VK +R        +    +     +G+ IEVLI++  ++   G+    +P 
Sbjct: 350 LDLPVVPDDVKQDRWERFMAHQQAISSARLQLRIGKEIEVLIDEVDEQGAVGRCFFDAPE 409

Query: 435 LQSVVL--NSKNHNIGDIIKVRITDVKISTLYGE 466
           +   V   ++     GD +   +TD     L+ E
Sbjct: 410 IDGNVFIDDASGLKPGDKVWCTVTDADEYDLWAE 443


>gi|167725836|ref|ZP_02409072.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Burkholderia
           pseudomallei DM98]
          Length = 453

 Score =  358 bits (920), Expect = 8e-97,   Method: Composition-based stats.
 Identities = 124/466 (26%), Positives = 205/466 (43%), Gaps = 48/466 (10%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           + S GC   + DS ++     ++GYE   + D ADL+V+NTC   ++A ++    +G   
Sbjct: 9   IVSLGCPKALVDSEQIITQLRAEGYEISGTYDGADLVVVNTCGFIDEAVQESLDAIGEAL 68

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEE----ILRRSPIVNVVVGPQTYYRLPELLERAR 144
                         V+V GC+   +       I    P V  V GP     + + +    
Sbjct: 69  AENGK---------VIVTGCLGAKKSASGSGLIAEVHPKVLAVTGPHAVGEVMQAVHSHL 119

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
                        D F  L    G     R   A+L I EGC+  C+FC++P  RG  +S
Sbjct: 120 P---------KPHDPFVDLVPAAGIKLTPRHY-AYLKISEGCNHRCSFCIIPSMRGELVS 169

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYSLSE 256
           R +++V+ EA  L  +GV E+ ++ Q+ +A+      R    +G   K   ++L+ +L E
Sbjct: 170 RPVAEVMLEAENLFKSGVKELLVISQDTSAYGVDVKYRTGFWNGRPLKTRMTELVGALGE 229

Query: 257 I----KGLVRLRYTTSHPRDMSDCLIKAHGDLD-VLMPYLHLPVQSGSDRILKSMNRRHT 311
           +       VRL Y   +P       + A   L   ++PYL +P Q     +LK M R   
Sbjct: 230 LAAQYGAWVRLHYVYPYPHVDEIIPMMAQAPLKGHVLPYLDVPFQHAHPEVLKRMKRPAN 289

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
           A    + + + R + PD+ I S FI GFPGETD  F   +D + +    +   F YSP  
Sbjct: 290 AERVLERVQKWREICPDLTIRSTFIAGFPGETDAQFETLLDFIREAELDRVGCFAYSPVE 349

Query: 372 GTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR 431
           G   + +   + ++V+  R     +   E   +     VG+ ++VLI++   E G  +GR
Sbjct: 350 GASANALDGALPDDVREARRARFMEVAEEVSAARIARKVGKTLKVLIDEVNAEGG--IGR 407

Query: 432 S----PWLQSVVLN------SKNHNIGDIIKVRITDVKISTLYGEL 467
           +    P +  VV        SK + +G+ + V+IT      L+GE+
Sbjct: 408 TAADAPEIDGVVYVEPAAKASKRYKVGEFVSVKITGADGHDLWGEV 453


>gi|238065378|sp|Q9Z8T3|RIMO_CHLPN RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
          Length = 468

 Score =  358 bits (920), Expect = 8e-97,   Method: Composition-based stats.
 Identities = 120/459 (26%), Positives = 213/459 (46%), Gaps = 23/459 (5%)

Query: 19  DQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAE 78
           +  I   +    S GC  N+ DS  M  +    GYE  N ++DAD ++LNTC   + A +
Sbjct: 10  NSVISKNKIHFISLGCSRNLVDSEVMLGILLKAGYESTNEIEDADYLILNTCAFLKSARD 69

Query: 79  KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPE 138
           +   +L  + ++K    K      ++V GC+     +E+      ++ ++G      +  
Sbjct: 70  EAKDYLDHLIDVKKENAK------IIVTGCMTSNHKDELKPWMSHIHYLLGSGDVENILS 123

Query: 139 LLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
            +E    G+++    Y    +  R       Y       A+L + EGC K C FC++P  
Sbjct: 124 AIESRESGEKISAKSYIEMGEVPRQLSTPKHY-------AYLKVAEGCRKRCAFCIIPSI 176

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT-FSDLLYSLSEI 257
           +G   S+ L Q++ E R L++  V EI L+ Q++    GK L  ++ +    LL+ L + 
Sbjct: 177 KGKLRSKPLDQILKEFRILVNKSVKEIILIAQDLG-DYGKDLSTDRSSQLESLLHELLKE 235

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
            G   LR    +P ++SD +I        L+PY+ +P+Q  +DRILK M R  +  +   
Sbjct: 236 PGDYWLRMLYLYPDEVSDGIIDLMQSNPKLLPYVDIPLQHINDRILKQMRRTTSREQILG 295

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
            ++++R+  P + I S  IVGFPGET ++F+   D + +        F YS    TP + 
Sbjct: 296 FLEKLRAKVPQVYIRSSVIVGFPGETQEEFQELADFIGEGWIDNLGIFLYSQEANTPAAE 355

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-----KLVGRS 432
           + +Q+ E VK  RL  L +  +      N   +G+ IE +I+ +  E       +  G++
Sbjct: 356 LPDQIPEKVKESRLKILSQIQKRNVDKHNQKLIGEKIEAVIDNYHPETNLLLTARFYGQA 415

Query: 433 PWLQSVVLNSKNHNI---GDIIKVRITDVKISTLYGELV 468
           P +   ++ ++   +   G+   + IT      L G +V
Sbjct: 416 PEVDPCIIVNEAKLVSHFGERCFIEITGTAGYDLVGRVV 454


>gi|213962512|ref|ZP_03390774.1| conserved hypothetical protein [Capnocytophaga sputigena Capno]
 gi|213954838|gb|EEB66158.1| conserved hypothetical protein [Capnocytophaga sputigena Capno]
          Length = 435

 Score =  358 bits (920), Expect = 8e-97,   Method: Composition-based stats.
 Identities = 124/438 (28%), Positives = 213/438 (48%), Gaps = 17/438 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++    + GC++N  ++  +   F   GY RV+  D AD+ V+NTC + E A +      
Sbjct: 2   KKVAFYTLGCKLNFAETSTIARSFEEDGYIRVDFDDPADIYVINTCSVTENADK------ 55

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            + + +    +K      +   GC AQ + EE+      V++V+G +  + + + ++   
Sbjct: 56  -QFKQIVRKALKTNPKAFLAAVGCYAQLKPEELASVD-GVDLVLGAKEKFNITQYIDDLT 113

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
                +     + +         G Y+      AFL +Q+GCD  CT+C +P  RGI  S
Sbjct: 114 KNNEGIVHSCEISET----DFYVGSYSIGDRTRAFLKVQDGCDYKCTYCTIPMARGISRS 169

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK---CTFSDLLYSLSEIKGLV 261
            ++  ++  A+K+ D G+ EI L G N+    GKG  G K    TF +L+ +L +++G+ 
Sbjct: 170 DTIENILSNAKKISDKGIKEIVLTGVNIG-DYGKGEFGNKKHEHTFLELVQALDKVEGIE 228

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           RLR ++  P  + D  I         +P+ H+P+QSGS+ ILK M RR+    Y   + +
Sbjct: 229 RLRISSIEPNLIKDETIDFIAQSKSFVPHFHIPLQSGSNEILKKMKRRYLRELYVSRVAK 288

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           IR V PD  I  D IVGFPGETD+ F  T   ++++  +    F YS R  T    M   
Sbjct: 289 IREVMPDACIGVDVIVGFPGETDEHFLETYHFLNELDISYLHVFTYSERDNTEAVLMEGV 348

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           V + V+A+R   L+    +++ +F ++ +G+   VL E   K+ G + G +     V   
Sbjct: 349 VPDAVRAKRSKMLRGLSVKKRNAFYESQLGKEKTVLFESDNKQ-GYIHGFTENYVKVKAP 407

Query: 442 SKNHNIGDIIKVRITDVK 459
                +  + KV++T + 
Sbjct: 408 WDPALVNTLHKVKLTKID 425


>gi|66044640|ref|YP_234481.1| ribosomal protein S12 methylthiotransferase [Pseudomonas syringae
           pv. syringae B728a]
 gi|75502967|sp|Q4ZWM9|RIMO_PSEU2 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|63255347|gb|AAY36443.1| Protein of unknown function UPF0004:Conserved hypothetical protein
           1125 [Pseudomonas syringae pv. syringae B728a]
          Length = 447

 Score =  358 bits (920), Expect = 8e-97,   Method: Composition-based stats.
 Identities = 133/467 (28%), Positives = 214/467 (45%), Gaps = 37/467 (7%)

Query: 17  IVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA 76
            V     P+  FV S GC   + DS R+      +GYE V + +DAD++V+NTC   + A
Sbjct: 3   TVTTPSAPKVGFV-SLGCPKALVDSERILTQLRMEGYEVVATYEDADVVVVNTCGFIDTA 61

Query: 77  AEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL 136
             +    +G         IKE G   V+V GC+   +   I    P V  V GPQ Y ++
Sbjct: 62  KAESLEVIGEA-------IKENG--KVIVTGCMG-VDASVIRNVHPSVLSVTGPQQYEQV 111

Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
              +      ++  +    +        +   G        A+L I EGC+  C+FC++P
Sbjct: 112 VNAVHDVVPPRKDHNPLIDL--------VPPQGVKLTPRHYAYLKISEGCNHSCSFCIIP 163

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFS 248
             RG  +SR +  V+DEA++L+ +GV E+ ++ Q+ +A+      R    DG+  K   +
Sbjct: 164 SMRGKLVSRPVGDVLDEAKRLVKSGVKELLVISQDTSAYGVDVKYRTGFWDGQPVKTRMT 223

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
           +L  +L  +   VRL Y   +P       + A G    ++PYL +P Q  S +ILK M R
Sbjct: 224 ELCQALGSMGVWVRLHYVYPYPHVDELIPLMAAG---KILPYLDIPFQHASPKILKLMKR 280

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
                +    I   R   PD+ I S FIVGFPGET++DF+  +D + +    +   F+YS
Sbjct: 281 PAFEDKTLARIKNWREQCPDLIIRSTFIVGFPGETEEDFQYLLDWLTEAQLDRVGCFQYS 340

Query: 369 PRLGTPGSNMLEQ-VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-- 425
           P  G P + +    V ++VK +R        +    +     +G+ IEVLI++       
Sbjct: 341 PVEGAPANLLDAAIVPDDVKQDRWDRFMAHQQAISAARLQMKIGKEIEVLIDEVDDRGAV 400

Query: 426 GKLVGRSPWLQSVVL----NSKNHNIGDIIKVRITDVKISTLYGELV 468
           G+    +P +   V     +      GD I  R+TD     L+ E++
Sbjct: 401 GRCFFDAPEIDGNVFIGLDDGSTVQPGDKIMCRVTDADEYDLWAEML 447


>gi|332884205|gb|EGK04473.1| ribosomal protein S12 methylthiotransferase rimO [Dysgonomonas
           mossii DSM 22836]
          Length = 431

 Score =  358 bits (920), Expect = 8e-97,   Method: Composition-based stats.
 Identities = 112/456 (24%), Positives = 208/456 (45%), Gaps = 34/456 (7%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEK 79
           +   R  V + GC  N+ DS  +     + GY   +  D  + ++ V+NTC     A E+
Sbjct: 1   MKKNRIDVITLGCSKNLVDSELLMKQLLANGYTVKHDPDKPEGEIAVINTCGFIGDAKEE 60

Query: 80  VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL 139
             + +      K +R        + V GC+ +   +E+    P V+   G   +  L   
Sbjct: 61  SINMILEFAEAKKARK----LSKLFVMGCLTERYMDELKAEIPEVDNFYGKFNWKMLISD 116

Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           L +           +  +   ER       Y       A+L I EGC++ C++C +P   
Sbjct: 117 LGK----------SFKQDIALERSITTPKHY-------AYLKISEGCNRTCSYCSIPIMT 159

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G   SR + ++ +E R L+  GV E  ++ Q++ ++ G   + ++    +L+  +++I+G
Sbjct: 160 GKHQSRPIEEIEEEVRNLVAVGVKEFQVIAQDL-SFYGYD-NYKQAKLPELIERIAKIEG 217

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           +  +R   ++P +    L++   + D +  YL + +Q  SD +L  M R  +      ++
Sbjct: 218 VKWIRLHYAYPANFPYDLLRVMRENDNVCKYLDIALQHVSDNMLTKMRRNISKQATYDLM 277

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NM 378
            RIR   P I + +  +VG PGET  DF   +  V+ + + +  +F YS   GT    N 
Sbjct: 278 KRIREEVPGIHLRTTLMVGHPGETKKDFEELLQFVNDMRFERMGAFPYSHEDGTYAYDNY 337

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PW 434
            + + +  K ER+  L     +     N+  +G+ ++V+++K  +E    +GR+    P 
Sbjct: 338 KDSISDATKQERMDLLMSAQEKIAFETNEEKIGKTLKVVVDK--EESDYYIGRTEYDSPE 395

Query: 435 LQSVVLNSKN--HNIGDIIKVRITDVKISTLYGELV 468
           +   VL  KN   NIG+   V+ITD +   LYGE++
Sbjct: 396 VDPEVLIKKNKMLNIGEFYNVKITDTQSFDLYGEVI 431


>gi|329963574|ref|ZP_08301053.1| ribosomal protein S12 methylthiotransferase RimO [Bacteroides
           fluxus YIT 12057]
 gi|328528563|gb|EGF55534.1| ribosomal protein S12 methylthiotransferase RimO [Bacteroides
           fluxus YIT 12057]
          Length = 432

 Score =  358 bits (920), Expect = 8e-97,   Method: Composition-based stats.
 Identities = 114/454 (25%), Positives = 199/454 (43%), Gaps = 35/454 (7%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEKVYS 82
           +   + + GC  N+ DS  +       GY   +        + V+NTC     A E+  +
Sbjct: 4   KTIDIITLGCSKNLVDSEHLMRQLEEAGYHVTHDAQHPKGQIAVINTCGFIGDAKEESIN 63

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +      K      GG   + V GC+++   +E+    P V+   G   +  L + L +
Sbjct: 64  MILEFAQAKEE----GGLEKLYVMGCLSERYLKELAIEIPQVDKFYGKFNWKELLQDLGK 119

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           A          Y  E   ER       Y       A+L I EGCD+ C++C +P   G  
Sbjct: 120 A----------YHDELHIERTLTTPKHY-------AYLKISEGCDRKCSYCAIPIITGKH 162

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR + +++DE R L+  GV E  ++ Q +  + G  L  +K    +L+  +S+I G+  
Sbjct: 163 VSRPMEEILDEVRYLVAGGVKEFQVIAQELT-YYGVDLY-KKQMLPELIERISDIPGVEW 220

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R   ++P    + L +   +   +  Y+ + +Q  SD +L  M R  T  E  Q+I+R 
Sbjct: 221 IRLHYAYPAHFPEDLFRVMRERPNVCKYMDIALQHISDNMLGKMRRHVTKAETYQLIERF 280

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT-PGSNMLEQ 381
           R   P I + +  +VG PGET+ DF    + V K  + +  +F YS   GT   +   + 
Sbjct: 281 RKEVPGIHLRTTLMVGHPGETEADFEELKEFVRKARFDRMGAFAYSEEEGTYAAATYEDV 340

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQS 437
           +   VK  RL  L    +      + A VG+ ++V+I++   E    VGR+    P +  
Sbjct: 341 IPREVKQARLDELMAIQQGISAELSAAKVGKRMKVIIDRL--EGDYYVGRTEFDSPEVDP 398

Query: 438 VVL---NSKNHNIGDIIKVRITDVKISTLYGELV 468
            VL     +  +IG+  +V + +     L+G ++
Sbjct: 399 EVLIECEDETLHIGNFYQVEVINSDDFDLFGRII 432


>gi|330968910|gb|EGH68976.1| ribosomal protein S12 methylthiotransferase [Pseudomonas syringae
           pv. aceris str. M302273PT]
          Length = 447

 Score =  358 bits (920), Expect = 8e-97,   Method: Composition-based stats.
 Identities = 133/467 (28%), Positives = 214/467 (45%), Gaps = 37/467 (7%)

Query: 17  IVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA 76
            V     P+  FV S GC   + DS R+      +GYE V + +DAD++V+NTC   + A
Sbjct: 3   TVTTPSAPKVGFV-SLGCPKALVDSERILTQLRMEGYEVVATYEDADVVVVNTCGFIDTA 61

Query: 77  AEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL 136
             +    +G         IKE G   V+V GC+   +   I    P V  V GPQ Y ++
Sbjct: 62  KAESLEVIGEA-------IKENG--KVIVTGCMG-VDASVIRNVHPSVLSVTGPQQYEQV 111

Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
              +      ++  +    +        +   G        A+L I EGC+  C+FC++P
Sbjct: 112 VNAVHDVVPPRKDHNPLIDL--------VPPQGVKLTPRHYAYLKISEGCNHSCSFCIIP 163

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFS 248
             RG  +SR +  V+DEA++L+ +GV E+ ++ Q+ +A+      R    DG+  K   +
Sbjct: 164 SMRGKLVSRPVGDVLDEAKRLVKSGVKELLVISQDTSAYGVDVKYRTGFWDGQPIKTRMT 223

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
           +L  +L  +   VRL Y   +P       + A G    ++PYL +P Q  S +ILK M R
Sbjct: 224 ELCQALGSMGVWVRLHYVYPYPHVDELIPLMAAG---KILPYLDIPFQHASPKILKLMKR 280

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
                +    I   R   PD+ I S FIVGFPGET++DF+  +D + +    +   F+YS
Sbjct: 281 PAFEDKTLARIKNWREQCPDLIIRSTFIVGFPGETEEDFQYLLDWLTEAQLDRVGCFQYS 340

Query: 369 PRLGTPGSNMLEQ-VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-- 425
           P  G P + +    V ++VK +R        +    +     +G+ IEVLI++       
Sbjct: 341 PVEGAPANLLDAAIVPDDVKQDRWDRFMAHQQAISAARLQMKIGKEIEVLIDEVDDRGAV 400

Query: 426 GKLVGRSPWLQSVVL----NSKNHNIGDIIKVRITDVKISTLYGELV 468
           G+    +P +   V     +      GD I  R+TD     L+ E++
Sbjct: 401 GRCFFDAPEIDGNVFIGLDDGSTVQPGDKIMCRVTDADEYDLWAEML 447


>gi|33152883|ref|NP_874236.1| hypothetical protein HD1896 [Haemophilus ducreyi 35000HP]
 gi|81423187|sp|Q7VKK2|RIMO_HAEDU RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|33149108|gb|AAP96625.1| conserved hypothetical protein [Haemophilus ducreyi 35000HP]
          Length = 443

 Score =  358 bits (920), Expect = 8e-97,   Method: Composition-based stats.
 Identities = 130/461 (28%), Positives = 216/461 (46%), Gaps = 41/461 (8%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           VP   F+ S GC  N+ DS R+     S GY  + S ++ADL+++NTC   + A ++   
Sbjct: 4   VPNIGFI-SLGCPKNLVDSERILTELRSDGYNIIPSYENADLVIVNTCGFIDSAVQESLE 62

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +G    LK +         V+V GC+  A+  +I    P V  + GP +Y  + + + +
Sbjct: 63  AVGEA--LKENGK-------VIVTGCLG-AKENQIREVHPKVLEITGPHSYEAVMQHVHK 112

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
                         E       +   G        A+L I EGCD  CTFC++P  RG  
Sbjct: 113 Y---------VPRPERNMYTSLVPAQGVKLTPKHYAYLKISEGCDHRCTFCIIPSMRGDL 163

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNV----------NAWRGKGLDG--EKCTFSDL 250
            SR + Q++DEA++L D+GV E+ ++ Q+           N  +    +G   K     L
Sbjct: 164 DSRPIVQILDEAKRLADSGVKELLIVSQDTSAYALDQTKENQNKTVFWNGVPIKNNLISL 223

Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
              L+ +   +RL Y   +P   +   + A G    ++PYL +P+Q  S +ILK+M R  
Sbjct: 224 CEQLATLGIWIRLHYVYPYPHVDNLIPLMAEG---KILPYLDIPLQHASPKILKAMKRPG 280

Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370
           +     + I + R + P++ + S FIVGFPGET++DF+  +D + +    +   FK+SP 
Sbjct: 281 SIDRTLERIKQWREICPELTLRSTFIVGFPGETEEDFQMLLDFLTEAQLDRVGCFKFSPV 340

Query: 371 LGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKL 428
            G   + M EQV E VK ER     +  +   V+     +G+ + ++I++  +    G+ 
Sbjct: 341 DGAVATEMAEQVPEEVKEERFHRFMQVQQRISVARLQQKIGKTLAIIIDEIDEYGIIGRS 400

Query: 429 VGRSPWLQSVVLNSK----NHNIGDIIKVRITDVKISTLYG 465
           +  +P +  VV           +G II V IT+     L+G
Sbjct: 401 MADAPEIDGVVYVDNISQQAVTVGQIILVTITNADEYDLWG 441


>gi|323436185|ref|ZP_01051257.2| MiaB-like tRNA modifying enzyme YliG [Dokdonia donghaensis MED134]
 gi|321496500|gb|EAQ38091.2| MiaB-like tRNA modifying enzyme YliG [Dokdonia donghaensis MED134]
          Length = 450

 Score =  358 bits (920), Expect = 9e-97,   Method: Composition-based stats.
 Identities = 122/460 (26%), Positives = 217/460 (47%), Gaps = 33/460 (7%)

Query: 17  IVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA 76
           +  + +   +  V + GC  NVYDS  +     +   +  +  +D +++V+NTC   + A
Sbjct: 1   MRTKSLKKNKINVVTLGCSKNVYDSEVLMGQLKANEMDVAH-EEDGNIVVINTCGFIDNA 59

Query: 77  AEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL 136
            E+  + +      K      G    V V GC+++    ++ +  P V+   G      L
Sbjct: 60  KEESVNTILEYVKQKEE----GDVDKVFVTGCLSERYKPDLQKEIPDVDQYFGT---TEL 112

Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
           P LL       + +  DY  E   ER++     Y       A+L I EGCD+ C+FC +P
Sbjct: 113 PGLL-------KALGADYKHELIGERITTTPKNY-------AYLKIAEGCDRPCSFCAIP 158

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256
             RG   S+S+  +V EA+KL  NGV E+ L+ Q++  + G  L  +K   ++LL +L +
Sbjct: 159 LMRGKHKSKSIEHLVVEAKKLAANGVTELILIAQDLT-YYGLDLY-KKRNLAELLENLVK 216

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           ++G+  +R   + P      ++        +  YL +P+Q  +D ILKSM R  T  +  
Sbjct: 217 VEGIEWIRLHYAFPSGFPVDVLDVMKREPKVCNYLDIPLQHIADPILKSMRRGTTMAKTN 276

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
            +++R R   P++ I +  IVG+PGET++DF+     V    + +   F YS    T   
Sbjct: 277 ALLERFRESVPEMTIRTTLIVGYPGETEEDFQTLKQWVKDQRFERLGCFTYSHEENTHAY 336

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS---- 432
           N+ + V E+VK +R   + +   +     N   +G+  ++++++  KE    +GR+    
Sbjct: 337 NLEDDVPEDVKMDRANQIMEIQSQISWELNQQKIGKEFKIVVDR--KEGNFFIGRTEFDS 394

Query: 433 PWLQSVVLNSKN---HNIGDIIKVRITDVKISTLYGELVV 469
           P + + VL          GD   V++T+ +   LY E +V
Sbjct: 395 PDVDNEVLVDATKFYLKTGDYAMVKVTEAEDFDLYAEPLV 434


>gi|153939005|ref|YP_001392232.1| RNA modification protein [Clostridium botulinum F str. Langeland]
 gi|152934901|gb|ABS40399.1| RNA modification enzyme, MiaB family [Clostridium botulinum F str.
           Langeland]
 gi|295320230|gb|ADG00608.1| RNA modification enzyme, MiaB family [Clostridium botulinum F str.
           230613]
          Length = 432

 Score =  358 bits (920), Expect = 9e-97,   Method: Composition-based stats.
 Identities = 133/444 (29%), Positives = 230/444 (51%), Gaps = 16/444 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    + GC++NVY++  M + F  QGYE V+  + AD+ V+NTC +     +K    + 
Sbjct: 2   KVAFSTLGCRVNVYETEAMTEKFIKQGYEIVDFNEVADVYVINTCTVTNMGDKKSRQMIS 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R R       ++    ++ V GC +Q   EE+  +   V+VV+G +    +   + RA  
Sbjct: 62  RGR-------RQNSKAIIAVVGCYSQIAPEEV-SKIDGVDVVLGTRNKGDIVYWVNRAME 113

Query: 146 GKRVVDTDYSV--EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            K  V     V    +FE L+I +     +    AFL IQ+GC++FC++C++P+ RG   
Sbjct: 114 EKNQVIEVKDVLRNKEFEELNIEEY----RDKTRAFLKIQDGCNRFCSYCLIPFARGAVC 169

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           S+   ++++E  KL  +G  EI L G ++ A  G  L+G K   + +L  +  ++G+ R+
Sbjct: 170 SKKPEKIMEEVEKLSKHGFKEIILSGIDI-ASYGFDLEG-KYNLTSILEEIDRVEGIERI 227

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R  +  P   ++  I     L    P+ HL +QSG +  LK MNR++T  +Y++I+  +R
Sbjct: 228 RIGSIDPTFFTEEEIIRISKLKRFCPHFHLSLQSGCNETLKRMNRKYTVEQYKEIVHNLR 287

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           +    ++I++D IVGFPGET+++F  T + +  I  ++   FK+SPR GT    M  QVD
Sbjct: 288 TNIESVSITTDIIVGFPGETEEEFNKTYEFLRDIKLSKMHVFKFSPRKGTRAEEMKNQVD 347

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
             +K ER   +    ++ +  F +  + + + VL E+  KEKG   G +P    +   S 
Sbjct: 348 GKIKEERSNKIINLDKDLEKEFMNKFIEKEMPVLYEQETKEKGIFEGYTPNYIKIYSKSS 407

Query: 444 NHNIGDIIKVRITDVKISTLYGEL 467
               G+II   + +V    + GE+
Sbjct: 408 KDITGEIINTTLKEVSKDFIKGEI 431


>gi|73541046|ref|YP_295566.1| hypothetical protein Reut_A1352 [Ralstonia eutropha JMP134]
 gi|123732951|sp|Q472G1|RIMO_RALEJ RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|72118459|gb|AAZ60722.1| Protein of unknown function UPF0004:Conserved hypothetical protein
           1125 [Ralstonia eutropha JMP134]
          Length = 452

 Score =  358 bits (920), Expect = 9e-97,   Method: Composition-based stats.
 Identities = 120/474 (25%), Positives = 201/474 (42%), Gaps = 46/474 (9%)

Query: 18  VDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA 77
           + Q     R    S GC   + DS ++     ++GY    + D ADL+V+NTC   ++A 
Sbjct: 1   MTQKDQSPRVGFVSLGCPKALVDSEQIITQLRAEGYAISGTYDGADLVVVNTCGFIDEAV 60

Query: 78  EKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQ----AEGEEILRRSPIVNVVVGPQTY 133
           ++    +G                 V+V GC+      A  + +    P V  V GP   
Sbjct: 61  QESLDAIGEALTENGK---------VIVTGCLGAKKDAAGHDIVSSVHPKVLAVTGPHAL 111

Query: 134 YRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC 193
             + + +                 D F  L     G        A+L I EGC+  C+FC
Sbjct: 112 GEVMQAVHTHLP---------KPHDPFTDLVPA-AGIKLTPKHYAYLKISEGCNHRCSFC 161

Query: 194 VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KC 245
           ++P  RG  +SR +++V+ EA  L   GV E+ ++ Q+ +A+      R    +G   K 
Sbjct: 162 IIPSMRGDLVSRPVAEVMLEAENLFKAGVKELLVISQDTSAYGVDVKYRTGFWNGRPLKT 221

Query: 246 TFSDLLYSLSEI----KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
             ++L+ +L E+       VRL Y   +P       +    +   ++PYL +P+Q     
Sbjct: 222 RMTELVAALGELAAQYGAWVRLHYVYPYPHVDEIIPLM---NGGHVLPYLDVPLQHAHPD 278

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
           +LK M R   A +    I   R V PD+ I S FI GFPGET+ +F   +D + +    +
Sbjct: 279 VLKRMKRPANAEKTLDRIRAWREVCPDLTIRSTFIAGFPGETEAEFETLLDFIAEAELDR 338

Query: 362 AFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKH 421
              F YSP  G   +++   + + V+ ER     +   E         VGQ + VLI++ 
Sbjct: 339 VGCFAYSPVEGATANDLPGALPDEVREERRARFMEVAEEVSARRLQRKVGQTLRVLIDEV 398

Query: 422 GKEK--GKLVGRSPWLQSVVLNSKNHNI------GDIIKVRITDVKISTLYGEL 467
            ++   G+    +P +  +V  +           GD ++V+IT      L+GE+
Sbjct: 399 NQDGGIGRSSADAPEIDGLVYIAPPAKPSQRYRAGDFVQVKITGADGHDLWGEI 452


>gi|237800198|ref|ZP_04588659.1| ribosomal protein S12 methylthiotransferase [Pseudomonas syringae
           pv. oryzae str. 1_6]
 gi|331023055|gb|EGI03112.1| ribosomal protein S12 methylthiotransferase [Pseudomonas syringae
           pv. oryzae str. 1_6]
          Length = 447

 Score =  358 bits (920), Expect = 9e-97,   Method: Composition-based stats.
 Identities = 133/467 (28%), Positives = 215/467 (46%), Gaps = 37/467 (7%)

Query: 17  IVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA 76
            V     P+  FV S GC   + DS R+      +GYE V + +DAD++V+NTC   + A
Sbjct: 3   TVTTPSAPKVGFV-SLGCPKALVDSERILTQLRMEGYEVVATYEDADVVVVNTCGFIDTA 61

Query: 77  AEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL 136
             +    +G         IKE G   V+V GC+   +   I    P V  V GPQ Y ++
Sbjct: 62  KAESLEVIGEA-------IKENG--KVIVTGCMG-VDASVIRSVHPSVLSVTGPQQYEQV 111

Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
              +      ++  +    +        +   G        A+L I EGC+  C+FC++P
Sbjct: 112 VNAVHDVVPPRQDHNPLIDL--------VPPQGVKLTPRHYAYLKISEGCNHSCSFCIIP 163

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFS 248
             RG  +SR +  V+DEA++L+ +GV E+ ++ Q+ +A+      R    DG+  K   +
Sbjct: 164 SMRGKLVSRPVGDVLDEAKRLVKSGVKELLVISQDTSAYGVDVKYRTGFWDGQPIKTRMT 223

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
           +L  +L  +   VRL Y   +P       + A G    ++PYL +P Q  S +ILK M R
Sbjct: 224 ELCQALGSMGVWVRLHYVYPYPHVDELIPLMAAG---KILPYLDIPFQHASPKILKLMKR 280

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
                +    I   R   PD+ I S FIVGFPGET++DF+  +D + +    +   F+YS
Sbjct: 281 PAFEDKTLARIKNWREQCPDLIIRSTFIVGFPGETEEDFQYLLDWLTEAQLDRVGCFQYS 340

Query: 369 PRLGTPGSNMLEQ-VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-- 425
           P  G P + +    V +++K +R        +    +     +G+ IEVLI++       
Sbjct: 341 PVEGAPANLLDAAIVPDDIKQDRWDRFMAHQQAISAARLQMKIGKEIEVLIDEVDDRGAV 400

Query: 426 GKLVGRSPWLQSVVL----NSKNHNIGDIIKVRITDVKISTLYGELV 468
           G+    +P +   V     +  N   GD I  R+TD     L+ E++
Sbjct: 401 GRCFFDAPEIDGNVFIGLEDGSNVQPGDKIMCRVTDADEYDLWAEML 447


>gi|325997150|gb|ADZ49358.1| Dimethyl allyl adenosine tRNA methylthiotransferase [Helicobacter
           pylori 2017]
          Length = 426

 Score =  358 bits (920), Expect = 9e-97,   Method: Composition-based stats.
 Identities = 140/439 (31%), Positives = 236/439 (53%), Gaps = 23/439 (5%)

Query: 36  MNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRI 95
           MN  DS  +        Y+  +    ADLI++NTC +REK   K++S +G+   +K    
Sbjct: 1   MNSRDSEHLLSELSKLDYKETSDPKMADLILINTCSVREKPERKLFSEIGQFAKIKK--- 57

Query: 96  KEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYS 155
               +  + V GC A   G +IL+++P V+ V+G +   ++ +++ + +  +  +D D S
Sbjct: 58  ---PNAKIGVCGCTASHMGADILKKAPSVSFVLGARNVSKISQVIHKEKAVEVAIDYDES 114

Query: 156 VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEAR 215
                   +     + +K  + + L I  GCDK C +C+VP+TRG EIS  +  ++ EA 
Sbjct: 115 --------AYAFEFFEKKAQIRSLLNISIGCDKKCAYCIVPHTRGKEISIPMDLILKEAE 166

Query: 216 KLIDNGVCEITLLGQNVNAWRGKGL-DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMS 274
           KL +NG  E+ LLGQNVN +  +   +  K  FSDLL  LSEI+G+ R+R+T+ HP  M+
Sbjct: 167 KLANNGTKELMLLGQNVNNYGVRFSSEHAKVGFSDLLDKLSEIQGIERIRFTSPHPLHMN 226

Query: 275 DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSD 334
           D  ++       +   +H+P+QSGS  +LK M R ++   +   ++R++++ P++ IS+D
Sbjct: 227 DEFLERFAKNPKVCKSIHMPLQSGSSAVLKMMRRGYSKEWFLNRVERLKALVPEVGISTD 286

Query: 335 FIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCL 394
            IVGFP E+D DF  TM++++K+ +   +SF YSPR  T      E+V   V + RL  L
Sbjct: 287 IIVGFPNESDKDFEDTMEVLEKVRFDTLYSFIYSPRPFTEAGAWKERVPLEVSSSRLERL 346

Query: 395 QKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV---GRSPWLQSVVLN-SKNHNIGDI 450
           Q + +E         VG+   VL+E   +  G++V   GRS   + + +   +  N G++
Sbjct: 347 QNRHKEILEEKAKLEVGKTHVVLVENRREMDGQIVGFEGRSDTGKFIEVTCKEKRNPGEL 406

Query: 451 IKVRITDVKISTLYGELVV 469
           ++V I         G L+ 
Sbjct: 407 VRVEIISHS----KGRLIA 421


>gi|194289474|ref|YP_002005381.1| ribosomal protein s12 methylthiotransferase [Cupriavidus
           taiwanensis LMG 19424]
 gi|238065328|sp|B3R4X7|RIMO_CUPTR RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|193223309|emb|CAQ69314.1| putative 2-methylthioadenine synthetase [Cupriavidus taiwanensis
           LMG 19424]
          Length = 470

 Score =  358 bits (920), Expect = 9e-97,   Method: Composition-based stats.
 Identities = 117/478 (24%), Positives = 203/478 (42%), Gaps = 46/478 (9%)

Query: 14  VSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIR 73
            S+  +Q     R    S GC   + DS ++     ++GY    + D ADL+V+NTC   
Sbjct: 15  PSEATNQKDHSPRVGFVSLGCPKALVDSEQIITQLRAEGYAISGTYDGADLVVVNTCGFI 74

Query: 74  EKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQ----AEGEEILRRSPIVNVVVG 129
           ++A ++    +G                 V+V GC+      A  + +    P V  V G
Sbjct: 75  DEAVQESLDAIGEALTENGK---------VIVTGCLGAKKDAAGHDIVSSVHPKVLAVTG 125

Query: 130 PQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKF 189
           P     + + +                 D F  L     G        A+L I EGC+  
Sbjct: 126 PHALGEVMQAVHTHLP---------KPHDPFTDLVPA-AGIKLTPKHYAYLKISEGCNHR 175

Query: 190 CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE 243
           C+FC++P  RG  +SR +++V+ EA  L   GV E+ ++ Q+ +A+      R    +G 
Sbjct: 176 CSFCIIPSMRGDLVSRPVAEVMLEAENLFKAGVKELLVISQDTSAYGVDVKYRTGFWNGR 235

Query: 244 --KCTFSDLLYSLSEI----KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQS 297
             K   ++L+ +L E+       VRL Y   +P       +    +   ++PYL +P+Q 
Sbjct: 236 PLKTRMTELVAALGELAAQYGAWVRLHYVYPYPHVDEIIPLM---NNGHVLPYLDVPLQH 292

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
               +LK M R   A +    I   R + P++ I S FI GFPGET+ +F+  +D + + 
Sbjct: 293 AHPDVLKRMKRPANAEKTMDRIRAWREICPELTIRSTFIAGFPGETEAEFQTLLDFIAEA 352

Query: 358 GYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVL 417
              +   F YSP  G   +++   + + V+ ER     +             VGQ + VL
Sbjct: 353 ELDRVGCFAYSPVEGATANDLPGALPDEVREERRARFMEVAEAVSARRLQRKVGQTLRVL 412

Query: 418 IEKHGKEK--GKLVGRSPWLQSVVLNSKN------HNIGDIIKVRITDVKISTLYGEL 467
           +++  ++   G+    +P +  +V  +        +  G+ + VRIT      L+GE+
Sbjct: 413 VDEVNQDGGIGRSSADAPEIDGLVYIAPPQRTSQRYRAGEFVDVRITGADGHDLWGEV 470


>gi|167836430|ref|ZP_02463313.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Burkholderia
           thailandensis MSMB43]
          Length = 463

 Score =  358 bits (920), Expect = 9e-97,   Method: Composition-based stats.
 Identities = 125/475 (26%), Positives = 213/475 (44%), Gaps = 48/475 (10%)

Query: 20  QCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEK 79
           + +   +  + S GC   + DS ++     ++GYE   + D ADL+V+NTC   ++A ++
Sbjct: 10  KPLAAPKVGMVSLGCPKALVDSEQIITQLRAEGYEISGTYDGADLVVVNTCGFIDEAVQE 69

Query: 80  VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEE----ILRRSPIVNVVVGPQTYYR 135
               +G                 V+V GC+   +       I    P V  V GP     
Sbjct: 70  SLDAIGEALAENGK---------VIVTGCLGAKKSASGSGLIEEVHPKVLAVTGPHAVGE 120

Query: 136 LPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
           + +++                 D F  L    G     R   A+L I EGC+  C+FC++
Sbjct: 121 VMQVVHSHLP---------KPHDPFVDLVPAAGIKLTPRHY-AYLKISEGCNHRCSFCII 170

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTF 247
           P  RG  +SR +++V+ EA  L  +GV E+ ++ Q+ +A+      R    +G   +   
Sbjct: 171 PSMRGDLVSRPVAEVMLEAENLFKSGVKELLVISQDTSAYGVDVKYRTGFWNGRPLRTRM 230

Query: 248 SDLLYSLSEI----KGLVRLRYTTSHPRDMSDCLIKAHGDL-DVLMPYLHLPVQSGSDRI 302
           ++L+ +L E+       VRL Y   +P       + A G L D ++PYL +P Q     +
Sbjct: 231 TELVGALGELAAQYGAWVRLHYVYPYPHVDEIIPMMAQGPLKDHVLPYLDVPFQHAHPDV 290

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           LK M R   A    + + + R + PD+ I S FI GFPGET+  F   +D + +    + 
Sbjct: 291 LKRMKRPANAERVLERVQKWREICPDLTIRSTFIAGFPGETEAQFETLLDFIREAELDRV 350

Query: 363 FSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422
             F YSP  G   + +   + ++++  R     +   E   +  +  VG+ ++VLI++  
Sbjct: 351 GCFAYSPVEGASANELDGALPDDMREARRARFMEVAEEVSAARIERKVGKTLKVLIDEVN 410

Query: 423 KEKGKLVGRS----PWLQSVVLN------SKNHNIGDIIKVRITDVKISTLYGEL 467
           +E G  VGR+    P +  VV        SK + +GD + V+IT      L+GE+
Sbjct: 411 EEGG--VGRTAADAPEIDGVVYVEPATKASKRYKVGDFVSVKITGADGHDLWGEV 463


>gi|154483626|ref|ZP_02026074.1| hypothetical protein EUBVEN_01330 [Eubacterium ventriosum ATCC
           27560]
 gi|149735536|gb|EDM51422.1| hypothetical protein EUBVEN_01330 [Eubacterium ventriosum ATCC
           27560]
          Length = 423

 Score =  358 bits (920), Expect = 9e-97,   Method: Composition-based stats.
 Identities = 126/430 (29%), Positives = 209/430 (48%), Gaps = 15/430 (3%)

Query: 44  MEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLV 103
           M  +    GYE  +    AD+I++N+C   + A E+    +  +   K      G    +
Sbjct: 1   MSGLLSKAGYEFTDDETQADIIIINSCCFIKDAKEESIETIFEMARYKEE----GQCKAL 56

Query: 104 VVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERL 163
           V+AGC+AQ   EEI    P V++ +G      +   L+      +  +    V+      
Sbjct: 57  VLAGCLAQRYHEEIKTEIPEVDICIGTTAIDSIVSALDDYFKEHKKKEYLKDVDFLAAAN 116

Query: 164 SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVC 223
           +  +       G  A+L I EGCDK CT+C++P  RG   S  +  ++DEA+KL + GV 
Sbjct: 117 APRNLS---TMGSYAYLKIAEGCDKHCTYCIIPKVRGNYRSVKMEYLIDEAKKLAEQGVK 173

Query: 224 EITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGD 283
           E+ L+ Q      GK + G+K +   LL  L++I G+  +R    +P ++ D LI     
Sbjct: 174 ELILVAQETTM-YGKDIYGKK-SLHILLKELAKISGIYWIRILYCYPEEIYDELIDVIAS 231

Query: 284 LDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGET 343
              +  YL LP+Q  SD ILK M RR T  + R II ++R   PDI + +  I GFPGET
Sbjct: 232 EKKICNYLDLPIQHASDTILKKMGRRTTNKDLRDIIGKLRKRIPDIVLRTTLITGFPGET 291

Query: 344 DDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQV 403
           ++D +  +D V+++ + +   F YS    TP +NM  Q+DE VK +R   + +  ++   
Sbjct: 292 EEDHQINLDFVNEMEFERLGVFTYSAEENTPAANMPNQIDEEVKEDRRNDIMELQQDIVF 351

Query: 404 SFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVL--NSKNHNIGDIIKVRITD 457
             ++  +G+    +IE     +   +GR+    P + S +     +    GD +KV++T 
Sbjct: 352 DNSEKHIGKTYIAMIEGRISGENAYMGRTYMDVPGIDSNIFIITDEELMTGDFVKVKVTG 411

Query: 458 VKISTLYGEL 467
           +    L G+L
Sbjct: 412 INDYDLIGQL 421


>gi|226939871|ref|YP_002794944.1| oxidoreductase [Laribacter hongkongensis HLHK9]
 gi|226714797|gb|ACO73935.1| Probable oxidoreductase [Laribacter hongkongensis HLHK9]
          Length = 473

 Score =  358 bits (920), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 127/464 (27%), Positives = 202/464 (43%), Gaps = 39/464 (8%)

Query: 19  DQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAE 78
                  R  V S GC     D+ ++     ++GYE  +S D+ADL+V+NTC   + A  
Sbjct: 4   STTSPSPRIGVVSLGCPKASVDTEQILTRLRAEGYELSSSYDNADLVVVNTCGFIDDAVA 63

Query: 79  KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRR-SPIVNVVVGPQTYYRLP 137
           +    +G    LK +         V+V GC+   EG  ++R   P V  V G      + 
Sbjct: 64  ESLDAIGEA--LKENGK-------VIVTGCLGAREGGNMVRDVHPSVLAVTGAHATDEVL 114

Query: 138 ELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197
             +                 D F  L +   G        A+L I EGC+  CTFC++P 
Sbjct: 115 AHVHAHLP---------KPHDPFVDL-VPGTGVRLTPKHYAYLKISEGCNHRCTFCIIPQ 164

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE---------KCTFS 248
            RG  +SR +  V+ EA  L   GV E+ ++ Q+ +A  G  L            +    
Sbjct: 165 LRGDLVSRPVHDVLQEAENLAKGGVRELLVVSQDTSA-YGVDLKYRTGFWQGRPIRTRLL 223

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
           +L   L ++    RL Y   +P       + A G   +++PYL +P Q  S ++LK+M R
Sbjct: 224 ELSRELGQMGMWTRLHYVYPYPSVDEIIPLMAEG---LVLPYLDIPFQHASQKVLKAMQR 280

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
              +      I + R + PD+A+ S FIVGFPGET+DDF+  +  +++    +   F YS
Sbjct: 281 PANSENVLARIKKWRDICPDLALRSTFIVGFPGETEDDFQELLGFLEEAQLDRVGCFTYS 340

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL 428
              G P   M  Q+ E +K ER     +       +   A VG+ ++V++++   E   L
Sbjct: 341 NVDGAPAKAMDGQIPEEIKQERQARFMEVQARISAARLAAKVGRTLDVIVDEVDSEADGL 400

Query: 429 VGRS----PWLQS-VVLNS-KNHNIGDIIKVRITDVKISTLYGE 466
             RS    P +   V ++   N   GDI+ V++ D     L+  
Sbjct: 401 ACRSRYDAPEIDGNVYIDGVGNARPGDILTVKVVDADEHDLWAR 444


>gi|289674642|ref|ZP_06495532.1| hypothetical protein PsyrpsF_15357 [Pseudomonas syringae pv.
           syringae FF5]
 gi|330975344|gb|EGH75410.1| ribosomal protein S12 methylthiotransferase [Pseudomonas syringae
           pv. aptata str. DSM 50252]
          Length = 447

 Score =  358 bits (919), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 133/467 (28%), Positives = 214/467 (45%), Gaps = 37/467 (7%)

Query: 17  IVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA 76
            V     P+  FV S GC   + DS R+      +GYE V + +DAD++V+NTC   + A
Sbjct: 3   TVTTPSAPKVGFV-SLGCPKALVDSERILTQLRMEGYEVVATYEDADVVVVNTCGFIDTA 61

Query: 77  AEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL 136
             +    +G         IKE G   V+V GC+   +   I    P V  V GPQ Y ++
Sbjct: 62  KAESLEVIGEA-------IKENG--KVIVTGCMG-VDASVIRNVHPSVLSVTGPQQYEQV 111

Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
              +      ++  +    +        +   G        A+L I EGC+  C+FC++P
Sbjct: 112 VNAVHDVVPPRKDHNPLIDL--------VPPQGVKLTPRHYAYLKISEGCNHSCSFCIIP 163

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFS 248
             RG  +SR +  V+DEA++L+ +GV E+ ++ Q+ +A+      R    DG+  K   +
Sbjct: 164 SMRGKLVSRPVGDVLDEAKRLVKSGVKELLVISQDTSAYGVDVKYRTGFWDGQPVKTRMT 223

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
           +L  +L  +   VRL Y   +P       + A G    ++PYL +P Q  S +ILK M R
Sbjct: 224 ELCQALGSMGVWVRLHYVYPYPHVDELIPLMAAG---KILPYLDIPFQHASPKILKLMKR 280

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
                +    I   R   PD+ I S FIVGFPGET++DF+  +D + +    +   F+YS
Sbjct: 281 PAFEDKTLARIKNWREQCPDLIIRSTFIVGFPGETEEDFQYLLDWLTEAQLDRVGCFQYS 340

Query: 369 PRLGTPGSNMLEQ-VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-- 425
           P  G P + +    V ++VK +R        +    +     +G+ IEVLI++       
Sbjct: 341 PVEGAPANLLDAAIVPDDVKQDRWDRFMAHQQAISAARLQMKIGKEIEVLIDEVDDRGAV 400

Query: 426 GKLVGRSPWLQSVVL----NSKNHNIGDIIKVRITDVKISTLYGELV 468
           G+    +P +   V     +      GD I  R+TD     L+ E++
Sbjct: 401 GRCFFDAPEIDGNVFIGLEDGSTVQPGDKIMCRVTDADEYDLWAEML 447


>gi|170756026|ref|YP_001782588.1| RNA modification protein [Clostridium botulinum B1 str. Okra]
 gi|169121238|gb|ACA45074.1| RNA modification enzyme, MiaB family [Clostridium botulinum B1 str.
           Okra]
          Length = 432

 Score =  358 bits (919), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 132/444 (29%), Positives = 230/444 (51%), Gaps = 16/444 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    + GC++NVY++  M + F  QGY+ V+  + AD+ V+NTC +     +K    + 
Sbjct: 2   KVAFSTLGCRVNVYETEAMTEKFIKQGYQIVDFNEVADVYVINTCTVTNMGDKKSRQMIS 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R R       ++    ++ V GC +Q   EE+  +   V+VV+G +    +   + RA  
Sbjct: 62  RGR-------RQNSKAIIAVVGCYSQIAPEEV-SKIDGVDVVLGTRNKGDIVYWVNRAME 113

Query: 146 GKRVVDTDYSV--EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            K  V     V    +FE L+I +     +    AFL IQ+GC++FC++C++P+ RG   
Sbjct: 114 EKNQVIEVKDVLRNKEFEELNIEEY----RDKTRAFLKIQDGCNRFCSYCLIPFARGAVC 169

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           S+   ++++E  KL  +G  EI L G ++ A  G  L+G K   + +L  +  ++G+ R+
Sbjct: 170 SKKPEKIMEEVEKLSKHGFKEIILSGIDI-ASYGFDLEG-KYNLTSILEEIDRVEGIERI 227

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R  +  P   ++  I     L    P+ HL +QSG +  LK MNR++T  +Y++I+  +R
Sbjct: 228 RIGSIDPTFFTEEEIIRISKLKRFCPHFHLSLQSGCNETLKRMNRKYTVEQYKEIVHNLR 287

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           +    ++I++D IVGFPGET+++F  T + +  I  ++   FK+SPR GT    M  QVD
Sbjct: 288 TNIESVSITTDIIVGFPGETEEEFNKTYEFLRDIKLSKMHVFKFSPRKGTRAEGMKNQVD 347

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
             +K ER   +    ++ +  F +  + + + VL E+  KEKG   G +P    +   S 
Sbjct: 348 GKIKEERSNKIINLDKDLEKEFMNKFIEKEMPVLYEQETKEKGIFEGYTPNYIKIYSKSS 407

Query: 444 NHNIGDIIKVRITDVKISTLYGEL 467
               G+II   + +V    + GE+
Sbjct: 408 KDITGEIINTTLKEVSKDFIKGEI 431


>gi|197118030|ref|YP_002138457.1| MiaB-like tRNA-modifying enzyme [Geobacter bemidjiensis Bem]
 gi|197087390|gb|ACH38661.1| MiaB-like tRNA-modifying enzyme [Geobacter bemidjiensis Bem]
          Length = 429

 Score =  358 bits (919), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 131/447 (29%), Positives = 210/447 (46%), Gaps = 22/447 (4%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + +   + + GC++N ++S  M       GY  V   D AD+ V+N+C +  K   +   
Sbjct: 1   MSKTIAITTLGCKINQFESAAMTQALEQNGYSMVPFSDKADIYVINSCTVTAKTDAESRR 60

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            + R   L         +  VVV GC AQ   EE+L+ +  VN+++G      +   LE 
Sbjct: 61  LIRRATRL-------NPEARVVVTGCYAQMNAEELLKLA-GVNLILGNSEKKDIVGFLEG 112

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
                R V +D S+E   +   +            AFL +Q GCD  C +C+VPY RG  
Sbjct: 113 MDDQPRAVVSDISLEKTGDTAPL----ETFAEHTRAFLQVQNGCDARCAYCIVPYARGAS 168

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            S ++ + +D        G  EI L G ++ A+   GLD    T    L   ++ +G+VR
Sbjct: 169 RSVAVQEALDGMAAFAAQGFQEIVLTGIHLGAY---GLDLAPATDLLGLMQKAQEQGVVR 225

Query: 263 -LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
            LR  +  P ++S  LI       ++ P+LHLP+QSGSD +L  MNR +    +R+++  
Sbjct: 226 RLRIGSVEPTEVSKQLIDFMARSPMVCPHLHLPLQSGSDSVLSRMNRGYDTALFREVVQS 285

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           + S  P++ I SD I GFPGE+D +F  T   +D +  A    F +S R GTP + M  Q
Sbjct: 286 LASAMPEVCIGSDVIAGFPGESDQEFDETYRFIDSLPLAYLHVFPFSQRPGTPAATMTPQ 345

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           V   V  ER   L+     ++  +    VG+ + VL++K  K      G S    +V++ 
Sbjct: 346 VHPKVIKERAEALRVLSERKKSDYAAGFVGRELRVLVQKGEK------GLSRNYLTVLIE 399

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                +   + V++T  K   L G ++
Sbjct: 400 ESKGLVNREVTVQVTGAKDGELVGRVL 426


>gi|224008014|ref|XP_002292966.1| hypothetical protein THAPSDRAFT_263872 [Thalassiosira pseudonana
           CCMP1335]
 gi|220971092|gb|EED89427.1| hypothetical protein THAPSDRAFT_263872 [Thalassiosira pseudonana
           CCMP1335]
          Length = 494

 Score =  358 bits (919), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 152/496 (30%), Positives = 246/496 (49%), Gaps = 60/496 (12%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +F +K+YGCQMNV D+  ++       +        AD+++ NTC IRE A  KV+  L 
Sbjct: 2   KFHIKTYGCQMNVNDTDIVQSSLQ---FIETTDEIQADILLTNTCAIRENAESKVWHRLR 58

Query: 86  RIRNLKNSRI--KEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
            +R+   +      G + ++ V GC+A+   E++  +    ++VVGP +Y  LP L+   
Sbjct: 59  ELRSHDRNYPLSSVGDERIIGVLGCMAERLKEDMF-QDGTADLVVGPDSYRDLPRLISVL 117

Query: 144 RFG-------KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
                     +R V+   S+++ +  +  +         V+AF++I  GC+  C++CVVP
Sbjct: 118 NAPATGTLPTERAVNVQLSLDETYASIKPIRSN---PNDVSAFVSIMRGCNNMCSYCVVP 174

Query: 197 YTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGL--------------- 240
           +TRG E SR L  VVDE R+L++  G+ E+ LLGQNVN++   G                
Sbjct: 175 FTRGRERSRGLENVVDETRRLVEEEGIKEVILLGQNVNSYHDIGDRKRKKQLVDDDKSYQ 234

Query: 241 -------------DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL 287
                        +G+   F DLL ++S +   +R+R+T+ HP+D    L+    +   +
Sbjct: 235 TSNPGFSNMFRLRNGDGHRFLDLLDAVSLLSPELRVRFTSPHPKDYPPPLLTLMAERPNI 294

Query: 288 MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDF 347
             +LH+P QSGS  +L+ M R +T   Y ++ID +R + PD+AISSDFI GF GET+++ 
Sbjct: 295 CSHLHMPAQSGSSSVLERMRRGYTREAYLELIDDVRRLIPDVAISSDFITGFCGETEEEH 354

Query: 348 RATMDLVDKIGYAQAFSFKYSPRLGTPGSN-MLEQVDENVKAERLLCLQKKLREQQVSFN 406
           + T+ L++++ + QAF F YS R  T     M + V   VK  RL  +    R +    N
Sbjct: 355 QDTLSLMEQVQFDQAFMFAYSMRGKTHAHRSMEDDVLPEVKQRRLNEVITVFRIEVQRRN 414

Query: 407 DA-CVGQIIEVLIEKHGKEKG----KLVGRSPWLQSVVLNSKNH---------NIGDIIK 452
           D   VG++  VL+E   K          GR+   + VV               + GD   
Sbjct: 415 DEVEVGKLRLVLVEGEAKRSTPGNRAWSGRTDQNKRVVFPDVEEVRPLTNVGLSRGDYAV 474

Query: 453 VRITDVKISTLYGELV 468
           V+I + +  TL G  +
Sbjct: 475 VQIEEARGHTLKGRAL 490


>gi|312143618|ref|YP_003995064.1| MiaB-like tRNA modifying enzyme YliG [Halanaerobium sp.
           'sapolanicus']
 gi|311904269|gb|ADQ14710.1| MiaB-like tRNA modifying enzyme YliG [Halanaerobium sp.
           'sapolanicus']
          Length = 445

 Score =  358 bits (919), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 118/450 (26%), Positives = 223/450 (49%), Gaps = 21/450 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQ-GYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ + + GC  N  DS  M+    S   +E +N+ + A++I++NTC   + A E+    +
Sbjct: 3   KYSIMTLGCPKNEVDSQHMQGFLNSDSEFEYINNFEKAEVIIINTCGFIQDAKEESIDTI 62

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
                 K    KE     VVV GC+ Q   EE+      ++ V+G   + ++ E+++ + 
Sbjct: 63  LTALEYK----KEHNCRSVVVTGCLTQRYSEELQDEIAEIDAVLGTSNFDKITEVIKESL 118

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            GK+    + +  D    L            V A+L I EGC+  C++C +P  RG   S
Sbjct: 119 AGKKAGGIEEAGFDYSASLP-----RELDNNVFAYLKIAEGCNNNCSYCSIPQIRGGIKS 173

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R+++ ++ EA+K+ ++G+ E+ L+ Q+     G  + G +   + LL  L+E++G+  +R
Sbjct: 174 RTIADIIREAKKIAESGIKELILIAQDTT-QYGIDIYG-RSALAPLLRKLTEVEGIEWIR 231

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
              S+P  +++ +I+   + D +  YL LP+Q  + +I K MNR+    +   II+ IR+
Sbjct: 232 ILYSYPEFITEEMIEVIAEEDKICNYLDLPIQHSAIKIRKLMNRKGDREDIANIINMIRN 291

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             PD+ + +  I GFPGE+  DF    + + +  + +   F++S    T   N+  ++  
Sbjct: 292 KIPDVKLRTSLISGFPGESQADFEDLKNFIKEFKFDRLGVFEFSLEEDTAAYNLPNRISP 351

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQS--- 437
            VK +R   L +  +E  +  N   + Q +EV+IE+  K     + R    SP + +   
Sbjct: 352 EVKKQRKEELLEIQQEISLEKNKGLLNQELEVIIEE--KTDDHYLARSRFDSPEIDNQIY 409

Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
           + + + +  IG+I +  IT+     L GE+
Sbjct: 410 IPVANNDLKIGNIYRTFITEAYHYELKGEI 439


>gi|83594143|ref|YP_427895.1| ribosomal protein S12 methylthiotransferase [Rhodospirillum rubrum
           ATCC 11170]
 gi|123725878|sp|Q2RQI7|RIMO_RHORT RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|83577057|gb|ABC23608.1| conserved hypothetical protein [Rhodospirillum rubrum ATCC 11170]
          Length = 441

 Score =  358 bits (919), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 134/455 (29%), Positives = 209/455 (45%), Gaps = 35/455 (7%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           Q+  + S GC   + DS R+     ++GYE   + DDA+++++NTC   + A  +    +
Sbjct: 6   QKVGIVSLGCPKALVDSERILTRLRAEGYEVSPTYDDANVVIVNTCGFLDSAKAESLEAI 65

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           G              +  V+V GC+   +   I    P V  V GPQ Y R+   +  A 
Sbjct: 66  GEA---------MAQNGRVIVTGCMG-GDEAAIRSAHPGVLAVTGPQQYERVVAAVHEAA 115

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
                        D +  L   +G     R   A+L I EGC+  CTFC++P  RG  +S
Sbjct: 116 P---------PAHDPYLDLVPAEGIRLTPRHY-AYLKISEGCNHGCTFCIIPDLRGKLVS 165

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE--------KCTFSDLLYSLSE 256
           R  S+V+ EA KL + GV E+ ++ Q+ +A+      GE        K   ++L  +L E
Sbjct: 166 RPASKVLMEAEKLAEAGVRELLVISQDTSAYGVDLRHGESPWHGAPVKARMTELCSALGE 225

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           +   VRL Y   +P       + A G    ++PYL +P Q  S +IL++M R        
Sbjct: 226 LGIWVRLHYVYPYPFVDEIIPLMAEG---KILPYLDIPFQHASPKILEAMKRPAAQDRTL 282

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
           + I R R++ PDIA+ S FIVGFPGET+DDF+  +D + +    +   FKY    G   +
Sbjct: 283 ERIRRWRTICPDIALRSTFIVGFPGETEDDFQQLLDWMGEAELDRVGCFKYEAVAGAKAN 342

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPW 434
            + + V E VK ER        +E         VG +IE +I++  +E   G+  G +P 
Sbjct: 343 ALADAVPEEVKEERWHRFMAAQQEISERRLAQKVGTVIEAIIDEVDEEGAIGRTKGDAPE 402

Query: 435 LQSVVLNSKN--HNIGDIIKVRITDVKISTLYGEL 467
           +   +  +       GDI+ V I       L+G L
Sbjct: 403 IDGSLFLNGETSLAPGDIVPVLIEHADEYDLWGSL 437


>gi|322418994|ref|YP_004198217.1| MiaB-like tRNA modifying enzyme [Geobacter sp. M18]
 gi|320125381|gb|ADW12941.1| MiaB-like tRNA modifying enzyme [Geobacter sp. M18]
          Length = 432

 Score =  358 bits (919), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 128/448 (28%), Positives = 211/448 (47%), Gaps = 19/448 (4%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + +R  + + GC++N ++S  M +     GY  V   + AD+ V+N+C +  K   +   
Sbjct: 1   MSKRIAITTLGCKINQFESAAMTEALEQDGYSFVPFSETADIYVINSCTVTAKTDAESRR 60

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +           +   +  VVV GC AQ  G+E+L + P VN+++G      +   ++ 
Sbjct: 61  LI-------RRAARLNPEARVVVTGCYAQMAGDELL-KLPGVNLILGNSEKKDIVGFIKG 112

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
                + V +D S +   ER  +     +      AFL +Q GCD  C +C+VPY RG  
Sbjct: 113 LGDEPQAVVSDISKQRSGERTQL----ESFAEHTRAFLQVQNGCDARCAYCIVPYARGAS 168

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            S +  + +D        G  EI L G ++ A+   GLD +  T    L  L+E +G VR
Sbjct: 169 RSVAPQEALDGMAAFAAKGFQEIVLTGIHLGAY---GLDLDPPTDLLGLMKLAEGQGSVR 225

Query: 263 -LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
            LR  +  P ++   +I       ++ P+LHLP+QSGSD +L  MNR +    +  ++  
Sbjct: 226 RLRIGSVEPTEVPAEMISFMAGSRIVCPHLHLPLQSGSDGVLSRMNRGYDTALFGDVVRA 285

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           + +V PD+ I SD I GFPGETD +F   +  ++ +  A    F +S R GTP + M  Q
Sbjct: 286 LVAVMPDVCIGSDVIAGFPGETDREFEEALSFIESLPLAYLHVFPFSQRPGTPAATMAAQ 345

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           V   V  ER   L+    +++  +    VG+ + VL++   K++G   G S     V++ 
Sbjct: 346 VQPRVIKERAEALRVLSEKKKAQYAARFVGRELPVLVQ---KDEGGRKGLSRNYLPVLIE 402

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELVV 469
                +   + V IT  +   L G L  
Sbjct: 403 GCEGLVNQEVSVLITGTRGGELLGRLAA 430


>gi|330936758|gb|EGH40924.1| ribosomal protein S12 methylthiotransferase [Pseudomonas syringae
           pv. pisi str. 1704B]
          Length = 477

 Score =  358 bits (919), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 133/465 (28%), Positives = 211/465 (45%), Gaps = 37/465 (7%)

Query: 17  IVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA 76
            V     P+  FV S GC   + DS R+      +GYE V + +DAD++V+NTC   + A
Sbjct: 3   TVTTPSAPKVGFV-SLGCPKALVDSERILTQLRMEGYEVVATYEDADVVVVNTCGFIDTA 61

Query: 77  AEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL 136
             +    +G         IKE G   V+V GC+   +   I    P V  V GPQ Y ++
Sbjct: 62  KAESLEVIGEA-------IKENG--KVIVTGCMG-VDASVIRNVHPSVLSVTGPQQYEQV 111

Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
              +      ++  +    +        +   G        A+L I EGC+  C+FC++P
Sbjct: 112 VNAVHDVVPPRKDHNPLIDL--------VPPQGVKLTPRHYAYLKISEGCNHSCSFCIIP 163

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFS 248
             RG  +SR +  V+DEA++L+ +GV E+ ++ Q+ +A+      R    DG+  K   +
Sbjct: 164 SMRGKLVSRPVGDVLDEAKRLVKSGVKELLVISQDTSAYGVDVKYRTGFWDGQPVKTRMT 223

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
           +L  +L  +   VRL Y   +P       + A G    ++PYL +P Q  S +ILK M R
Sbjct: 224 ELCQALGSMGVWVRLHYVYPYPHVDELIPLMAAG---KILPYLDIPFQHASPKILKLMKR 280

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
                +    I   R   PD+ I S FIVGFPGET++DF+  +D + +    +   F+YS
Sbjct: 281 PAFEDKTLARIKNWREQCPDLIIRSTFIVGFPGETEEDFQYLLDWLTEAQLDRVGCFQYS 340

Query: 369 PRLGTPGSNMLEQ-VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-- 425
           P  G P + +    V ++VK +R        +    +     +G+ IEVLI++       
Sbjct: 341 PVEGAPANLLDAAIVPDDVKQDRWDRFMAHQQAISAARLQMKIGKEIEVLIDEVDDRGAV 400

Query: 426 GKLVGRSPWLQSVVL----NSKNHNIGDIIKVRITDVKISTLYGE 466
           G+    +P +   V     +      GD I  R+TD     L G 
Sbjct: 401 GRCFFDAPEIDGNVFIGLEDGSTVQPGDKIMCRVTDADEYDLVGR 445


>gi|213969167|ref|ZP_03397306.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato T1]
 gi|301383939|ref|ZP_07232357.1| ribosomal protein S12 methylthiotransferase [Pseudomonas syringae
           pv. tomato Max13]
 gi|302064176|ref|ZP_07255717.1| ribosomal protein S12 methylthiotransferase [Pseudomonas syringae
           pv. tomato K40]
 gi|302134739|ref|ZP_07260729.1| ribosomal protein S12 methylthiotransferase [Pseudomonas syringae
           pv. tomato NCPPB 1108]
 gi|213926165|gb|EEB59721.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato T1]
 gi|330872676|gb|EGH06825.1| ribosomal protein S12 methylthiotransferase [Pseudomonas syringae
           pv. morsprunorum str. M302280PT]
 gi|330967890|gb|EGH68150.1| ribosomal protein S12 methylthiotransferase [Pseudomonas syringae
           pv. actinidiae str. M302091]
 gi|331016417|gb|EGH96473.1| ribosomal protein S12 methylthiotransferase [Pseudomonas syringae
           pv. lachrymans str. M302278PT]
          Length = 447

 Score =  358 bits (919), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 133/467 (28%), Positives = 214/467 (45%), Gaps = 37/467 (7%)

Query: 17  IVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA 76
            V     P+  FV S GC   + DS R+      +GYE V + +DAD++V+NTC   + A
Sbjct: 3   TVTTPSAPKVGFV-SLGCPKALVDSERILTQLRMEGYEVVATYEDADVVVVNTCGFIDTA 61

Query: 77  AEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL 136
             +    +G         IKE G   V+V GC+   +   I    P V  V GPQ Y ++
Sbjct: 62  KAESLEVIGEA-------IKENG--KVIVTGCMG-VDASVIRAVHPSVLSVTGPQQYEQV 111

Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
              +      ++  +    +        +   G        A+L I EGC+  C+FC++P
Sbjct: 112 VNAVHDVVPPRKDHNPLIDL--------VPPQGVKLTPRHYAYLKISEGCNHSCSFCIIP 163

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFS 248
             RG  +SR +  V+DEA++L+ +GV E+ ++ Q+ +A+      R    DG+  K   +
Sbjct: 164 SMRGKLVSRPVGDVLDEAKRLVKSGVKELLVISQDTSAYGVDVKYRTGFWDGQPVKTRMT 223

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
           +L  +L  +   VRL Y   +P       + A G    ++PYL +P Q  S +ILK M R
Sbjct: 224 ELCQALGSMGVWVRLHYVYPYPHVDELIPLMAAG---KILPYLDIPFQHASPKILKLMKR 280

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
                +    I   R   PD+ I S FIVGFPGET++DF+  +D + +    +   F+YS
Sbjct: 281 PAFEDKTLARIKNWREQCPDLIIRSTFIVGFPGETEEDFQYLLDWLTEAQLDRVGCFQYS 340

Query: 369 PRLGTPGSNMLEQ-VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-- 425
           P  G P + +    V ++VK +R        +    +     +G+ IEVLI++       
Sbjct: 341 PVEGAPANLLDAAIVPDDVKQDRWDRFMAHQQAISAARLQMKIGKEIEVLIDEVDDRGAV 400

Query: 426 GKLVGRSPWLQSVVL----NSKNHNIGDIIKVRITDVKISTLYGELV 468
           G+    +P +   V     +      GD I  R+TD     L+ E++
Sbjct: 401 GRCFFDAPEIDGNVFIGLEDGSTVQPGDKIMCRVTDADEYDLWAEML 447


>gi|325297732|ref|YP_004257649.1| Ribosomal protein S12 methylthiotransferase rimO [Bacteroides
           salanitronis DSM 18170]
 gi|324317285|gb|ADY35176.1| Ribosomal protein S12 methylthiotransferase rimO [Bacteroides
           salanitronis DSM 18170]
          Length = 433

 Score =  358 bits (919), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 116/457 (25%), Positives = 206/457 (45%), Gaps = 35/457 (7%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEK 79
           +      + + GC  N+ DS ++     + GY+  +       ++ V+NTC     A E+
Sbjct: 1   MKKNTIDIITLGCSKNLVDSEKLMKQLEANGYKVTHDSGNPQGEIAVINTCGFIGDAKEE 60

Query: 80  VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL 139
             + +      K      G    + V GC+++   +++    P V+   G   +    EL
Sbjct: 61  SINTILEFCQAKEE----GKLKKLFVMGCLSERYLKDLQDEIPQVDKYYGKFNWN---EL 113

Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           L  A  GK      Y  +   ER       Y       A+L I EGCD+ C +C +P   
Sbjct: 114 L--ADLGK-----PYHPDLAIERHLTTPKHY-------AYLKISEGCDRKCAYCAIPIIT 159

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G  +SR + +++DE R L+  GV E  ++ Q +  + G  L  +K    +L+  ++ I G
Sbjct: 160 GRHVSRPMDEILDEVRLLVSQGVKEFQVIAQELT-YYGVDLY-KKQMLPELIEKMAAIPG 217

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           +  +R   ++P      L +   + D +  Y+ + +Q  SD +L+ MNR  T  E  ++I
Sbjct: 218 VKWIRLHYAYPARFPKDLFRVMRENDNVCKYMDIALQHISDNMLQRMNRHVTKAETYELI 277

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN-M 378
           ++ R   P I + +  +VGFPGET+ DF    + V K+ + +  +F YS   GT  +   
Sbjct: 278 EQFRKEVPGIHLRTTLMVGFPGETEQDFEELKEFVRKVRFDRMGAFAYSEEEGTYSAKHY 337

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PW 434
            + V + VK +RL  L +  +E     + + +G+I +V+I++  KE    +GR+    P 
Sbjct: 338 KDDVPQTVKQQRLDELMEMQQEISNELSHSKIGKIFQVVIDR--KEGEYYIGRTEFDSPE 395

Query: 435 LQSVVLNSKNHN---IGDIIKVRITDVKISTLYGELV 468
           +   VL         IG   + ++ D     LY  L+
Sbjct: 396 VDPEVLIKDEGKLLHIGSFHRAKVYDADDFDLYATLL 432


>gi|16752786|ref|NP_445054.1| hypothetical protein CP0510 [Chlamydophila pneumoniae AR39]
 gi|7189427|gb|AAF38338.1| conserved hypothetical protein [Chlamydophila pneumoniae AR39]
          Length = 503

 Score =  358 bits (919), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 120/459 (26%), Positives = 213/459 (46%), Gaps = 23/459 (5%)

Query: 19  DQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAE 78
           +  I   +    S GC  N+ DS  M  +    GYE  N ++DAD ++LNTC   + A +
Sbjct: 45  NSVISKNKIHFISLGCSRNLVDSEVMLGILLKAGYESTNEIEDADYLILNTCAFLKSARD 104

Query: 79  KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPE 138
           +   +L  + ++K    K      ++V GC+     +E+      ++ ++G      +  
Sbjct: 105 EAKDYLDHLIDVKKENAK------IIVTGCMTSNHKDELKPWMSHIHYLLGSGDVENILS 158

Query: 139 LLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
            +E    G+++    Y    +  R       Y       A+L + EGC K C FC++P  
Sbjct: 159 AIESRESGEKISAKSYIEMGEVPRQLSTPKHY-------AYLKVAEGCRKRCAFCIIPSI 211

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT-FSDLLYSLSEI 257
           +G   S+ L Q++ E R L++  V EI L+ Q++    GK L  ++ +    LL+ L + 
Sbjct: 212 KGKLRSKPLDQILKEFRILVNKSVKEIILIAQDLG-DYGKDLSTDRSSQLESLLHELLKE 270

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
            G   LR    +P ++SD +I        L+PY+ +P+Q  +DRILK M R  +  +   
Sbjct: 271 PGDYWLRMLYLYPDEVSDGIIDLMQSNPKLLPYVDIPLQHINDRILKQMRRTTSREQILG 330

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
            ++++R+  P + I S  IVGFPGET ++F+   D + +        F YS    TP + 
Sbjct: 331 FLEKLRAKVPQVYIRSSVIVGFPGETQEEFQELADFIGEGWIDNLGIFLYSQEANTPAAE 390

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-----KLVGRS 432
           + +Q+ E VK  RL  L +  +      N   +G+ IE +I+ +  E       +  G++
Sbjct: 391 LPDQIPEKVKESRLKILSQIQKRNVDKHNQKLIGEKIEAVIDNYHPETNLLLTARFYGQA 450

Query: 433 PWLQSVVLNSKNHNI---GDIIKVRITDVKISTLYGELV 468
           P +   ++ ++   +   G+   + IT      L G +V
Sbjct: 451 PEVDPCIIVNEAKLVSHFGERCFIEITGTAGYDLVGRVV 489


>gi|219116801|ref|XP_002179195.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217409086|gb|EEC49018.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 516

 Score =  358 bits (918), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 150/526 (28%), Positives = 253/526 (48%), Gaps = 92/526 (17%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + P +F ++++GCQMNV DS  +  +   +G+       DAD+++ NTC IRE A +KV+
Sbjct: 1   MHPFKFHLRTFGCQMNVNDSDIVRALLLERGFTETLDETDADVLLTNTCAIREGAEQKVW 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL- 140
             L  +R       K     +V V GC+A+    ++  R  + ++VVGP  Y  LP L+ 
Sbjct: 61  HRLRELRG------KFKSRKVVGVLGCMAERLQTDLF-RDGLADLVVGPDAYRDLPRLMR 113

Query: 141 --------ERARFGK--RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190
                   + A  G+  +  +   S+++ +  ++ V         V+AF++IQ GC   C
Sbjct: 114 DLLREPDDDDAELGRVNQAFNVQLSLDETYADVTPVRRH---GNSVSAFVSIQRGCANRC 170

Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW--------------- 235
           +FC+VP+TRG E SR  + VV E ++L + GV E+TLLGQNVN++               
Sbjct: 171 SFCIVPFTRGQERSRPFASVVGEIQQLYEQGVKEVTLLGQNVNSYHDTSETALSVRPDSG 230

Query: 236 RGKGLDGEKCT---------FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV 286
                DG +           F+DL+ ++S+I   +R+R+T+ HP+D    L+    +   
Sbjct: 231 YRMSNDGFRSRIRRHDGGYYFADLVAAVSDISSELRVRFTSPHPKDYPPPLLTLMAERPN 290

Query: 287 LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDD 346
           +  +LH+P QSGS  +L+ M R ++   Y +++D +  + PD+AISSDFI GF  E++++
Sbjct: 291 VCNHLHMPAQSGSTSMLQRMKRGYSREAYLELMDTVHEIIPDVAISSDFIAGFCDESEEE 350

Query: 347 FRATMDLVDKIGYAQAFSFKYSPRLGTPGSN-MLEQVDENVKAERLLCLQKKLREQQVSF 405
              T+ L++++ Y QAF F YS R  T     M + V E+VK  RL+ +    +      
Sbjct: 351 HLDTLSLMERVRYDQAFMFAYSMRGKTHAHRTMQDNVPEDVKKRRLIEIIDTFQRHVQEK 410

Query: 406 NDAC-VGQIIEVLIEKHGKEKG----KLVGRSPWLQSVVLNSKN---------------- 444
           N++  VG++  VL+E   K          GR+   + ++                     
Sbjct: 411 NESLEVGRLRLVLVEGESKRSHPGARAWQGRTDQNKRIIFPVDETVTVHDHAALAPVWTT 470

Query: 445 -------------------------HNIGDIIKVRITDVKISTLYG 465
                                     ++GD + V++T+ K  TL G
Sbjct: 471 LLRPHAKSERGFDPKVQLAELPRVSLSVGDYVVVQVTEAKGHTLRG 516


>gi|167562580|ref|ZP_02355496.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Burkholderia
           oklahomensis EO147]
          Length = 453

 Score =  358 bits (918), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 125/469 (26%), Positives = 208/469 (44%), Gaps = 48/469 (10%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R  + S GC   + DS ++     ++GYE   + D ADL+V+NTC   ++A ++    +G
Sbjct: 6   RIGIVSLGCPRALVDSEQIITQLRAEGYEISGTYDGADLVVVNTCGFIDEAVQESLDAIG 65

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEE----ILRRSPIVNVVVGPQTYYRLPELLE 141
                            V+V GC+   +       I    P V  V GP     + + + 
Sbjct: 66  EALAENGK---------VIVTGCLGAKKSASGSGLIEEVHPKVLAVTGPHAVGEVMQAVH 116

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
                           D F  L    G     R   A+L I EGC+  C+FC++P  RG 
Sbjct: 117 SHLP---------KPHDPFVDLVPAAGIKLTPRHY-AYLKISEGCNHRCSFCIIPSMRGD 166

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYS 253
            +SR +++V+ EA  L  +GV E+ ++ Q+ +A+      R    +G   K   ++L+ +
Sbjct: 167 LVSRPVAEVMLEAENLFKSGVKELLVISQDTSAYGVDVKYRTGFWNGRPLKTRMTELVGA 226

Query: 254 LSEI----KGLVRLRYTTSHPRDMSDCLIKAHGDLD-VLMPYLHLPVQSGSDRILKSMNR 308
           L E+       VRL Y   +P       + A G L   ++PYL +P Q     +LK M R
Sbjct: 227 LGELAAQYGAWVRLHYVYPYPHVDEIIPMMAEGPLKGHVLPYLDVPFQHAHPDVLKRMKR 286

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
              A +  + + + R + PD+ I S FI GFPGET+  F   +D + +    +   F YS
Sbjct: 287 PANAEKVLERVQKWREICPDLTIRSTFIAGFPGETEAQFETLLDFIREAELDRVGCFAYS 346

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL 428
           P  G   + +   + ++V+  R     +       +  +  VG+ ++VLI++   E G  
Sbjct: 347 PVEGASANELDGALPDDVREARRARFMEVAEAVSAARIERKVGKTLKVLIDEVNAEGG-- 404

Query: 429 VGRS----PWLQSVVLN------SKNHNIGDIIKVRITDVKISTLYGEL 467
           +GR+    P +  VV        SK + +GD + V+IT      L+GE+
Sbjct: 405 IGRTAADAPEIDGVVYVEPATKASKRYKVGDFVSVKITGADGHDLWGEV 453


>gi|302187178|ref|ZP_07263851.1| ribosomal protein S12 methylthiotransferase [Pseudomonas syringae
           pv. syringae 642]
          Length = 447

 Score =  358 bits (918), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 133/467 (28%), Positives = 213/467 (45%), Gaps = 37/467 (7%)

Query: 17  IVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA 76
            V     P+  FV S GC   + DS R+      +GYE V + +DAD++V+NTC   + A
Sbjct: 3   TVTTPSAPKVGFV-SLGCPKALVDSERILTQLRMEGYEVVATYEDADVVVVNTCGFIDTA 61

Query: 77  AEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL 136
             +    +G         IKE G   V+V GC+   +   I    P V  V GPQ Y ++
Sbjct: 62  KAESLEVIGEA-------IKENG--KVIVTGCMG-VDASVIRNVHPSVLSVTGPQQYEQV 111

Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
              +      +   +    +        +   G        A+L I EGC+  C+FC++P
Sbjct: 112 VNAVHDVVPPRHDHNPLIDL--------VPPQGVKLTPRHYAYLKISEGCNHSCSFCIIP 163

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFS 248
             RG  +SR +  V+DEA++L+ +GV E+ ++ Q+ +A+      R    DG+  K   +
Sbjct: 164 SMRGKLVSRPVGDVLDEAKRLVKSGVKELLVISQDTSAYGVDVKYRTGFWDGQPVKTRMT 223

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
           +L  +L  +   VRL Y   +P       + A G    ++PYL +P Q  S +ILK M R
Sbjct: 224 ELCQALGSMGVWVRLHYVYPYPHVDELIPLMAAG---KILPYLDIPFQHASPKILKLMKR 280

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
                +    I   R   PD+ I S FIVGFPGET++DF+  +D + +    +   F+YS
Sbjct: 281 PAFEDKTLARIKNWREQCPDLIIRSTFIVGFPGETEEDFQYLLDWLTEAQLDRVGCFQYS 340

Query: 369 PRLGTPGSNMLEQ-VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-- 425
           P  G P + +    V ++VK +R        +    +     +G+ IEVLI++       
Sbjct: 341 PVEGAPANLLDAAIVPDDVKQDRWDRFMAHQQAISAARLQMKIGKEIEVLIDEVDDRGAV 400

Query: 426 GKLVGRSPWLQSVVL----NSKNHNIGDIIKVRITDVKISTLYGELV 468
           G+    +P +   V     +      GD I  R+TD     L+ E++
Sbjct: 401 GRCFFDAPEIDGNVFIGLEDGSTVQPGDKIMCRVTDADEYDLWAEML 447


>gi|298736784|ref|YP_003729314.1| bifunctional enzyme involved in thiolation and methylation of tRNA
           [Helicobacter pylori B8]
 gi|298355978|emb|CBI66850.1| bifunctional enzyme involved in thiolation and methylation of tRNA
           [Helicobacter pylori B8]
          Length = 426

 Score =  358 bits (918), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 140/439 (31%), Positives = 235/439 (53%), Gaps = 23/439 (5%)

Query: 36  MNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRI 95
           MN  DS  +        Y+  +    ADLI++NTC +REK   K++S +G+   +K    
Sbjct: 1   MNSRDSEHLLSELSKLDYKETSDPKTADLILINTCSVREKPERKLFSEIGQFAKIKK--- 57

Query: 96  KEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYS 155
               +  + V GC A   G +IL+++P V+ V+G +   ++ +++ R +  +  +D D S
Sbjct: 58  ---PNAKIGVCGCTASHMGADILKKAPSVSFVLGARNVSKISQVIHREKAVEVAIDYDES 114

Query: 156 VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEAR 215
                   +     + +K  + + L I  GCDK C +C+VP+TRG EIS  +  ++ EA 
Sbjct: 115 --------AYAFEFFEKKAQIRSLLNISIGCDKKCAYCIVPHTRGKEISIPMDLILREAE 166

Query: 216 KLIDNGVCEITLLGQNVNAWRGKGL-DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMS 274
           KL +NG  E+ LLGQNVN +  +   +  K  FSDLL  LSEI+G+ R+R+T+ HP  M+
Sbjct: 167 KLANNGTKELMLLGQNVNNYGARFSSEHAKVDFSDLLDKLSEIQGIERIRFTSPHPLHMN 226

Query: 275 DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSD 334
           D  ++       +   +H+P+QSGS  +LK M R ++   +   ++R++++ P++ IS+D
Sbjct: 227 DRFLERFAKNPKVCKSIHMPLQSGSSAVLKMMRRGYSKEWFLNRVERLKALVPEVGISTD 286

Query: 335 FIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCL 394
            IVGFP E+D DF  TM++++K+ +   +SF YSPR  T      E+V   V + RL  L
Sbjct: 287 IIVGFPNESDKDFEDTMEVLEKVRFDTLYSFIYSPRPFTEAGAWKERVPLEVSSSRLERL 346

Query: 395 QKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV---GRSPWLQSVVLN-SKNHNIGDI 450
           Q + +E         VG+   VL+E   +   ++V   GRS   + + +   +  N G++
Sbjct: 347 QNRHKEILEEKAKLEVGKTHVVLVENRREMDDQIVGFEGRSDTGKFIEVACKEKRNPGEL 406

Query: 451 IKVRITDVKISTLYGELVV 469
           ++V I         G L+ 
Sbjct: 407 VRVEIVSHS----KGRLIA 421


>gi|15835786|ref|NP_300310.1| hypothetical protein CPj0251 [Chlamydophila pneumoniae J138]
 gi|8978624|dbj|BAA98461.1| conserved hypothetical protein [Chlamydophila pneumoniae J138]
          Length = 500

 Score =  358 bits (918), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 123/474 (25%), Positives = 219/474 (46%), Gaps = 26/474 (5%)

Query: 7   LIGVAHMVSQIVDQ---CIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDAD 63
           +I    M ++ +D     I   +    S GC  N+ DS  M  +    GYE  N ++DAD
Sbjct: 27  IIREPRMTTKSLDSFNSVISKNKIHFISLGCSRNLVDSEVMLGILLKAGYESTNEIEDAD 86

Query: 64  LIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPI 123
            ++LNTC   + A ++   +L  + ++K    K      ++V GC+     +E+      
Sbjct: 87  YLILNTCAFLKSARDEAKDYLDHLIDVKKENAK------IIVTGCMTSNHKDELKPWMSH 140

Query: 124 VNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQ 183
           ++ ++G      +   +E    G+++    Y    +  R       Y       A+L + 
Sbjct: 141 IHYLLGSGDVENILSAIESRESGEKISAKSYIEMGEVPRQLSTPKHY-------AYLKVA 193

Query: 184 EGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
           EGC K C FC++P  +G   S+ L Q++ E R L++  V EI L+ Q++    GK L  +
Sbjct: 194 EGCRKRCAFCIIPSIKGKLRSKPLDQILKEFRILVNKSVKEIILIAQDLG-DYGKDLSTD 252

Query: 244 KCT-FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
           + +    LL+ L +  G   LR    +P ++SD +I        L+PY+ +P+Q  +DRI
Sbjct: 253 RSSQLESLLHELLKEPGDYWLRMLYLYPDEVSDGIIDLMQSNPKLLPYVDIPLQHINDRI 312

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           LK M R  +  +    ++++R+  P + I S  IVGFPGET ++F+   D + +      
Sbjct: 313 LKQMRRTTSREQILGFLEKLRAKVPQVYIRSSVIVGFPGETQEEFQELADFIGEGWIDNL 372

Query: 363 FSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422
             F YS    TP + + +Q+ E VK  RL  L +  +      N   +G+ IE +I+ + 
Sbjct: 373 GIFLYSQEANTPAAELPDQIPEKVKESRLKILSQIQKRNVDKHNQKLIGEKIEAVIDNYH 432

Query: 423 KEKG-----KLVGRSPWLQSVVLNSKNHNI---GDIIKVRITDVKISTLYGELV 468
            E       +  G++P +   ++ ++   +   G+   + IT      L G +V
Sbjct: 433 PETNLLLTARFYGQAPEVDPCIIVNEAKLVSHFGERCFIEITGTAGYDLVGRVV 486


>gi|224540006|ref|ZP_03680545.1| hypothetical protein BACCELL_04918 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224518373|gb|EEF87478.1| hypothetical protein BACCELL_04918 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 432

 Score =  358 bits (918), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 110/454 (24%), Positives = 202/454 (44%), Gaps = 35/454 (7%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEKVYS 82
           +   + + GC  N+ DS  +       GY   +  +  + ++ V+NTC     A E+  +
Sbjct: 4   KTIDIITLGCSKNLVDSEHLMRQLEEAGYHVTHDTEKPEGEIAVINTCGFIGDAKEESIN 63

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +      K      G    + V GC+++   +E+    P V+   G   +  L + L +
Sbjct: 64  MILEFAQAKEE----GDLEKLYVMGCLSERYLKELAIEIPQVDKFYGKFNWVELLQDLGK 119

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           A          Y  E   ER       Y       A+L I EGCD+ C++C +P   G  
Sbjct: 120 A----------YHEELHIERTLTTPRHY-------AYLKISEGCDRKCSYCAIPIITGKH 162

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR + +++DE R L+  GV E  ++ Q +  + G  L  +K    +L+  +SE+ G+  
Sbjct: 163 VSRPMEEILDEVRYLVSKGVKEFQVIAQELT-YYGVDLY-KKQMLPELIERISEVPGVEW 220

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R   ++P      L +   +   +  Y+ + +Q  S+ +L+ M R  T  E   +I++ 
Sbjct: 221 IRLHYAYPAHFPMDLFRVMRERPNVCRYMDIALQHISNPMLEKMRRHVTQEETYHLIEQF 280

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT-PGSNMLEQ 381
           R   P I + +  +VG PGET+ DF    + + K  + +  +F YS   GT   ++  ++
Sbjct: 281 RKEVPGIHLRTTLMVGHPGETEADFEELKEFIRKARFDRMGAFTYSEEEGTYAAAHYEDE 340

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQS 437
           + + VK  RL  L    +      + A VGQ ++V+I++   E    +GR+    P +  
Sbjct: 341 IPQEVKQARLDELMSIQQGISAEQSAAKVGQCLKVIIDRL--EGDYYIGRTEFDSPEVDP 398

Query: 438 VVLN---SKNHNIGDIIKVRITDVKISTLYGELV 468
            VL     +   IG+  +V I +     L+G ++
Sbjct: 399 EVLIEQGKQKLLIGNFYQVEIINSDDFDLFGRVI 432


>gi|188583573|ref|YP_001927018.1| ribosomal protein S12 methylthiotransferase [Methylobacterium
           populi BJ001]
 gi|238066397|sp|B1ZEV4|RIMO_METPB RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|179347071|gb|ACB82483.1| MiaB-like tRNA modifying enzyme YliG [Methylobacterium populi
           BJ001]
          Length = 448

 Score =  358 bits (918), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 133/467 (28%), Positives = 205/467 (43%), Gaps = 35/467 (7%)

Query: 14  VSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIR 73
            S    +     R    S GC   + DS R+     ++GYE     D AD++++NTC   
Sbjct: 5   ASPSDTKGAAAPRISFVSLGCPKALVDSERILTHLRAEGYELSRRHDGADVVIVNTCGFL 64

Query: 74  EKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTY 133
           + A  +    +G              +  V+V GC+  A+ EEI  + P +  V GPQ Y
Sbjct: 65  DSAKAESLQAIGEA---------MAENGRVIVTGCMG-AQPEEIREKYPNLLAVTGPQAY 114

Query: 134 YRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC 193
             +   +  A              D F  L I   G        A+L I EGC+  CTFC
Sbjct: 115 ESVVAAVHEA---------VPPAHDPFLDL-IPPQGVKLTPRHYAYLKISEGCNNRCTFC 164

Query: 194 VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE--------KC 245
           ++P  RG  +SR    V+ EA KL+  GV E+ ++ Q+ +A+                + 
Sbjct: 165 IIPSLRGDLVSRPAGDVLREAEKLVKAGVKELLVVSQDTSAYGIDTRYATSPWRDREVRA 224

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
            F DL   L E+   VRL Y   +P       + A G    ++PYL +P+Q  S  +LK 
Sbjct: 225 RFYDLASELGELGAWVRLHYVYPYPHVDEVIPLMAEG---KILPYLDMPLQHASPSVLKR 281

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           M R          I R R + P++AI S FIVGFPGET+ +F   +D + +    +   F
Sbjct: 282 MRRPGNQERQLDRIRRWREICPELAIRSTFIVGFPGETEAEFEELLDWIREARLERVGCF 341

Query: 366 KYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK--HGK 423
           +Y P  G P +++   V   VKAER     +      +    A VG+ ++V+I++   G 
Sbjct: 342 EYEPVKGAPANDLGLLVPPEVKAERKRRFMEAQAGVSLKLQRAKVGKRLQVIIDEAGPGG 401

Query: 424 EKGKLVGRSPWLQS-VVLNS-KNHNIGDIIKVRITDVKISTLYGELV 468
            +G+    +P +   V + S +    GDI+ V+I       L+G  V
Sbjct: 402 ARGRSKADAPEIDGSVHVASRRPLRPGDIVTVKIERADAYDLHGIAV 448


>gi|153864929|ref|ZP_01997651.1| tRNA-i(6)A37 modification enzyme MiaB [Beggiatoa sp. SS]
 gi|152145575|gb|EDN72348.1| tRNA-i(6)A37 modification enzyme MiaB [Beggiatoa sp. SS]
          Length = 304

 Score =  358 bits (918), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 136/302 (45%), Positives = 202/302 (66%), Gaps = 2/302 (0%)

Query: 168 GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITL 227
               +  G TAF++I EGC  +CTFCVVPYTRG E+SR    V+ E   L D GV E+TL
Sbjct: 1   MPEPKAEGPTAFVSIMEGCSHYCTFCVVPYTRGEEVSRPFDDVIAEVAFLADQGVREVTL 60

Query: 228 LGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL 287
           LGQNVN +RG   +G+    + L+  ++ I G+ R+RYTTSHP ++S+ LI+ + ++  L
Sbjct: 61  LGQNVNGYRGHKAEGDIADLALLITYIAAIDGIERIRYTTSHPLELSENLIQVYAEVPKL 120

Query: 288 MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDF 347
           + +LHLPVQSGSDRIL  M R HTA EY+Q + ++R+VRPD+++SSDFI+GFPGET+ DF
Sbjct: 121 VSHLHLPVQSGSDRILSLMKRGHTALEYKQKVRKLRAVRPDLSLSSDFIIGFPGETEADF 180

Query: 348 RATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFND 407
           +ATM L+++IG+  +FSF YSPR GTP +++ + V   +K +RL  LQ ++ E   + + 
Sbjct: 181 QATMQLIEEIGFDHSFSFIYSPRPGTPAASLPDDVPIALKKQRLAQLQARITEMAHAISA 240

Query: 408 ACVGQIIEVLIEKHGKEKGK--LVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYG 465
           + VG I  +L+E+  ++  K  + GR+   + V    K   IG  ++VRIT+   ++L G
Sbjct: 241 SLVGSIQRILVEQPSRKNPKELVAGRTENNRVVNFAGKASLIGQFVEVRITEALPNSLRG 300

Query: 466 EL 467
           E+
Sbjct: 301 EI 302


>gi|319902104|ref|YP_004161832.1| SSU ribosomal protein S12P methylthiotransferase [Bacteroides
           helcogenes P 36-108]
 gi|319417135|gb|ADV44246.1| SSU ribosomal protein S12P methylthiotransferase [Bacteroides
           helcogenes P 36-108]
          Length = 432

 Score =  358 bits (918), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 115/454 (25%), Positives = 204/454 (44%), Gaps = 35/454 (7%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEKVYS 82
           +   + + GC  N+ DS  +       GY   +  +     + V+NTC     A E+  +
Sbjct: 4   KTIDIITLGCSKNLVDSEHLMRQLEGVGYHVTHDSEHPKGQIAVINTCGFIGDAKEESIN 63

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +      K +    G    + V GC+++   +E+    P V+   G   +  L + L +
Sbjct: 64  MILEFAQAKEA----GDLEKLYVMGCLSERYLKELAVEIPQVDKFYGKFNWKELLQDLGK 119

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           A          Y  E   ER       Y       A+L I EGCD+ C++C +P   G  
Sbjct: 120 A----------YHDELHIERTLTTPKHY-------AYLKISEGCDRKCSYCAIPIITGKH 162

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR + +++DE + L+  GV E  ++ Q +  + G  L  +K    +L+  +SEI G+  
Sbjct: 163 VSRPMEEILDEVKYLVAEGVKEFQVIAQELT-YYGVDLY-KKQMLPELIEHISEIPGVEW 220

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R   ++P      L +   +   +  Y+ + +Q  SD +L  M R  T  E  Q+I++ 
Sbjct: 221 IRLHYAYPAHFPMELFRVMRERSNVCKYMDIALQHISDNMLMRMRRHVTKAETYQLIEKF 280

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT-PGSNMLEQ 381
           R+  P I + +  +VG+PGET+ DF    D V K+ + +  +F YS   GT   +   + 
Sbjct: 281 RNEVPGIHLRTTLMVGYPGETEADFEELKDFVHKVRFDRMGAFAYSEEEGTYAAATYEDS 340

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQS 437
           V + VK +RL  L    +      + A +G+ ++V+I++   E    VGR+    P +  
Sbjct: 341 VPQEVKQKRLDDLMTIQQGISAELSTAKIGKRMKVIIDRL--EGDYYVGRTEFDSPEVDP 398

Query: 438 VVL---NSKNHNIGDIIKVRITDVKISTLYGELV 468
            VL     K+  IG+  +  I +     L+G++V
Sbjct: 399 EVLIKRKDKDLLIGNFYQTEIINSDDFDLFGQIV 432


>gi|150019979|ref|YP_001305333.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Thermosipho
           melanesiensis BI429]
 gi|229891013|sp|A6LJ47|MIAB_THEM4 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|149792500|gb|ABR29948.1| RNA modification enzyme, MiaB family [Thermosipho melanesiensis
           BI429]
          Length = 430

 Score =  358 bits (918), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 148/445 (33%), Positives = 245/445 (55%), Gaps = 20/445 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++  +K+YGCQMN  DS   +     +GYE  N+ +DAD+++LNTC +R+K+ +K YS +
Sbjct: 2   KKIHIKTYGCQMNENDSEVAKFYLEEEGYEITNNENDADIVILNTCVVRKKSEDKFYSHI 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           G ++           + ++ + GC A+ E E++ +R   V  V+G +    +P+ +ERA 
Sbjct: 62  GELKK---------QNKIIGIMGCGAEKEKEKLFKR--GVKFVIGTRAIPLIPQAVERAI 110

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            GK+        EDK + +        R     A++TI  GC++FCT+C+VPYTRG E S
Sbjct: 111 NGKK----SAIFEDKMDEID-YKKILKRNSKHHAWITIIYGCNRFCTYCIVPYTRGREKS 165

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R +  +++E   L  +G+ E+T LGQNV+A  GK L+ +  + + LL    +I+ + R+ 
Sbjct: 166 RKMDDIINEVENLAKSGIKEVTYLGQNVDA-YGKDLN-DGSSLAKLLNLTKDIEEIERIW 223

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           + TS+P D S  +     +   +   +HLPVQ GS++ILK MNRR+T  EY ++I+ IR 
Sbjct: 224 FLTSYPTDFSLDIAHEVANSSKITKNIHLPVQHGSNKILKKMNRRYTIEEYIELINDIRK 283

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM-LEQVD 383
           + PD +ISSD IVGFP ET++DF  T++LV  I + +     YSPR GT       + V 
Sbjct: 284 IVPDASISSDIIVGFPDETEEDFEKTVELVKNIKFERLNLAIYSPREGTIAWKYFEDNVP 343

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
             +K +R+  +    +E     N+  + + +E+++E   K  G   GR    + +     
Sbjct: 344 RIIKTKRMAYILNLQKEINKQLNENYLNKTVEIIVETKAK-SGLYYGRDIRNKIIAFEGD 402

Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468
              IG  + V++       LYG+++
Sbjct: 403 KSLIGKKVLVKVKKTTAGPLYGDII 427


>gi|45361233|ref|NP_989194.1| CDK5 regulatory subunit-associated protein 1-like 1 [Xenopus
           (Silurana) tropicalis]
 gi|82186429|sp|Q6P4Y0|CDKAL_XENTR RecName: Full=CDK5 regulatory subunit-associated protein 1-like 1
 gi|38649005|gb|AAH63205.1| CDK5 regulatory subunit associated protein 1-like 1 [Xenopus
           (Silurana) tropicalis]
          Length = 553

 Score =  358 bits (918), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 114/457 (24%), Positives = 211/457 (46%), Gaps = 19/457 (4%)

Query: 15  SQIVDQCIVP--QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHI 72
            +      +P  Q+ +++++GC  N  D   M     + GY      + ADL +LN+C +
Sbjct: 48  EEPPADSTIPGTQKIWIRTWGCSHNNSDGEYMAGQLAAYGYSITEQPEQADLWLLNSCTV 107

Query: 73  REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT 132
           +  A +   + + + +              VV++GCV QA+  +   +      ++G Q 
Sbjct: 108 KSPAEDHFRNSIKKAQEANKK---------VVLSGCVPQAQPRQEYMKG---LSIIGVQQ 155

Query: 133 YYRLPELLERARFGKRVVDTDYSVED-KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCT 191
             R+ E++E    G  V       ++ K    + +D    RK  +   ++I  GC   CT
Sbjct: 156 IDRVVEVVEETIKGHSVRLLGQKKDNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACT 215

Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLL 251
           +C   + RG   S  + ++VD A +    GVCEI L  ++  A  G+ +  +  T    L
Sbjct: 216 YCKTKHARGELASYPVEELVDRAAQSFQEGVCEIWLTSEDTGA-YGRDIGTDLPTLLWKL 274

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
             +     ++RL  T           +    +   +  +LH+PVQS SD +L  M R + 
Sbjct: 275 VEVIPEGAMLRLGMTNPPYILEHLEEMAKILNHPRVYAFLHIPVQSASDSVLMDMKREYC 334

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
             ++++++D ++   P I I++D I GFPGETD+DF+ T+ LV++  +   F  ++ PR 
Sbjct: 335 IADFKRVVDFLKERVPGITIATDIICGFPGETDEDFKETLKLVEEYKFPSLFINQFYPRP 394

Query: 372 GTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR 431
           GTP + M EQV  +VK +R   L +       S  D  +G+   VL+ +   +    V  
Sbjct: 395 GTPAAKM-EQVPAHVKKQRTKELSQLF--HSYSPYDHKIGEEQHVLVTEESFDSQYYVSH 451

Query: 432 SPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           + + + V++      +G +++V+I +     + G+ V
Sbjct: 452 NRFYEQVLVPKDPAFVGKMVEVKIFEAGKHFMKGQPV 488


>gi|330894643|gb|EGH27304.1| ribosomal protein S12 methylthiotransferase [Pseudomonas syringae
           pv. mori str. 301020]
          Length = 447

 Score =  358 bits (918), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 133/467 (28%), Positives = 213/467 (45%), Gaps = 37/467 (7%)

Query: 17  IVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA 76
            V     P+  FV S GC   + DS R+      +GYE V + +DAD++V+NTC   + A
Sbjct: 3   TVTTPSAPKVGFV-SLGCPKALVDSERILTQLRMEGYEVVATYEDADVVVVNTCGFIDTA 61

Query: 77  AEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL 136
             +    +G         IKE G   V+V GC+   +   I    P V  V GPQ Y ++
Sbjct: 62  KAESLEVIGEA-------IKENG--KVIVTGCMG-VDANVIRDVHPSVLSVTGPQQYEQV 111

Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
              +      ++  +    +        +   G        A+L I EGC+  C+FC++P
Sbjct: 112 VNAVHDVVPPRKDHNPLIDL--------VPPQGVKLTPRHYAYLKISEGCNHSCSFCIIP 163

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFS 248
             RG  +SR +  V+DEA++L+ +GV E+ ++ Q+ +A+      R    DG+  K   +
Sbjct: 164 SMRGKLVSRPVGDVLDEAKRLVKSGVKELLVISQDTSAYGVDVKYRTGFWDGQPVKTRMT 223

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
           +L  +L  +   VRL Y   +P       + A G    ++PYL +P Q  S +ILK M R
Sbjct: 224 ELCQALGSMGVWVRLHYVYPYPHVDELIPLMAAG---KILPYLDIPFQHASPKILKLMKR 280

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
                +    I   R   PD+ I S FIVGFPGET++DF+  +D + +    +   F+YS
Sbjct: 281 PAFEDKTLARIKNWREQCPDLIIRSTFIVGFPGETEEDFQYLLDWLTEAQLDRVGCFQYS 340

Query: 369 PRLGTPGSNMLEQ-VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-- 425
           P  G P + +    V ++VK +R        +    +     +G+ IEVLI++       
Sbjct: 341 PVEGAPANLLDAAIVPDDVKQDRWDRFMAHQQAISAARLQMKIGKEIEVLIDEVDDRGAV 400

Query: 426 GKLVGRSPWLQSVVL----NSKNHNIGDIIKVRITDVKISTLYGELV 468
           G+    +P +   V            GD I  R+TD     L+ E++
Sbjct: 401 GRCFFDAPEIDGNVFFGLEEGSTVQPGDKIMCRVTDADEYDLWAEML 447


>gi|317476990|ref|ZP_07936232.1| MiaB-like tRNA modifying enzyme YliG [Bacteroides eggerthii
           1_2_48FAA]
 gi|316906783|gb|EFV28495.1| MiaB-like tRNA modifying enzyme YliG [Bacteroides eggerthii
           1_2_48FAA]
          Length = 432

 Score =  358 bits (918), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 111/454 (24%), Positives = 198/454 (43%), Gaps = 35/454 (7%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEKVYS 82
           +   + + GC  N+ DS  +       G+   +  +     + V+NTC     A E+  +
Sbjct: 4   KTIDIITLGCSKNLVDSEHLMRQLEEAGFCVTHDAERPKGQIAVINTCGFIGDAKEESIN 63

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +      K      G    + V GC+++   +E+    P V+   G   +  L + L +
Sbjct: 64  MILEFAQAKEE----GNLEKLYVMGCLSERYLKELAIEIPQVDKFYGKFNWKELLQDLGK 119

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           A          Y  E   ER       Y       A+L I EGCD+ C++C +P   G  
Sbjct: 120 A----------YHEEFHIERTLTTPTHY-------AYLKISEGCDRKCSYCAIPIITGRH 162

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           ISR + +++DE R L+  GV E  ++ Q +  + G  L  +K    +L+  +S++ G+  
Sbjct: 163 ISRPIEEILDEVRYLVTRGVKEFQVIAQELT-YYGVDLY-KKQMLPELIERISDVPGVEW 220

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R   ++P      L +   +   +  Y+ + +Q  SD +L  M R  T  E  ++I+  
Sbjct: 221 IRLHYAYPAHFPMDLFRVMRERSNVCKYMDIALQHISDNMLDKMRRHVTKEETYRLIEEF 280

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT-PGSNMLEQ 381
           R   P I + +  +VG PGET+ DF    + V K+ + +  +F YS   GT   ++  + 
Sbjct: 281 REEVPGIHLRTTLMVGHPGETEADFEELKEFVRKVRFDRMGAFAYSEEEGTYAAAHYEDS 340

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQS 437
           V   VK  RL  L    +      +   VG+ ++V+I++  +E    VGR+    P +  
Sbjct: 341 VPPEVKQARLDELMSIQQGISAELSAGKVGKRMKVIIDR--REGDYYVGRTEFDSPEVDP 398

Query: 438 VVLN---SKNHNIGDIIKVRITDVKISTLYGELV 468
            VL      +  IG+  +V I +     L+G ++
Sbjct: 399 EVLIECGDASLEIGNFYQVEIINSDDFDLFGRII 432


>gi|15618175|ref|NP_224460.1| hypothetical protein CPn0251 [Chlamydophila pneumoniae CWL029]
 gi|33241593|ref|NP_876534.1| hypothetical protein CpB0258 [Chlamydophila pneumoniae TW-183]
 gi|4376526|gb|AAD18404.1| conserved hypothetical protein [Chlamydophila pneumoniae CWL029]
 gi|33236101|gb|AAP98191.1| hypothetical protein CpB0258 [Chlamydophila pneumoniae TW-183]
          Length = 500

 Score =  357 bits (917), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 120/459 (26%), Positives = 213/459 (46%), Gaps = 23/459 (5%)

Query: 19  DQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAE 78
           +  I   +    S GC  N+ DS  M  +    GYE  N ++DAD ++LNTC   + A +
Sbjct: 42  NSVISKNKIHFISLGCSRNLVDSEVMLGILLKAGYESTNEIEDADYLILNTCAFLKSARD 101

Query: 79  KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPE 138
           +   +L  + ++K    K      ++V GC+     +E+      ++ ++G      +  
Sbjct: 102 EAKDYLDHLIDVKKENAK------IIVTGCMTSNHKDELKPWMSHIHYLLGSGDVENILS 155

Query: 139 LLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
            +E    G+++    Y    +  R       Y       A+L + EGC K C FC++P  
Sbjct: 156 AIESRESGEKISAKSYIEMGEVPRQLSTPKHY-------AYLKVAEGCRKRCAFCIIPSI 208

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT-FSDLLYSLSEI 257
           +G   S+ L Q++ E R L++  V EI L+ Q++    GK L  ++ +    LL+ L + 
Sbjct: 209 KGKLRSKPLDQILKEFRILVNKSVKEIILIAQDLG-DYGKDLSTDRSSQLESLLHELLKE 267

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
            G   LR    +P ++SD +I        L+PY+ +P+Q  +DRILK M R  +  +   
Sbjct: 268 PGDYWLRMLYLYPDEVSDGIIDLMQSNPKLLPYVDIPLQHINDRILKQMRRTTSREQILG 327

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
            ++++R+  P + I S  IVGFPGET ++F+   D + +        F YS    TP + 
Sbjct: 328 FLEKLRAKVPQVYIRSSVIVGFPGETQEEFQELADFIGEGWIDNLGIFLYSQEANTPAAE 387

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-----KLVGRS 432
           + +Q+ E VK  RL  L +  +      N   +G+ IE +I+ +  E       +  G++
Sbjct: 388 LPDQIPEKVKESRLKILSQIQKRNVDKHNQKLIGEKIEAVIDNYHPETNLLLTARFYGQA 447

Query: 433 PWLQSVVLNSKNHNI---GDIIKVRITDVKISTLYGELV 468
           P +   ++ ++   +   G+   + IT      L G +V
Sbjct: 448 PEVDPCIIVNEAKLVSHFGERCFIEITGTAGYDLVGRVV 486


>gi|255536060|ref|YP_003096431.1| possible 2-methylthioadenine synthetase [Flavobacteriaceae
           bacterium 3519-10]
 gi|255342256|gb|ACU08369.1| possible 2-methylthioadenine synthetase [Flavobacteriaceae
           bacterium 3519-10]
          Length = 440

 Score =  357 bits (917), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 123/460 (26%), Positives = 215/460 (46%), Gaps = 33/460 (7%)

Query: 17  IVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA 76
           +  + +  ++  + + GC  NVYDS  +     + G + V+  D  D++V+NTC   + A
Sbjct: 1   MRTKSVGKKQINIVTLGCSKNVYDSEVLMGQLQANGKKVVH-EDRGDIVVINTCGFIDNA 59

Query: 77  AEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL 136
            E+  + +      KN     G    V V GC+++    +++R  P V+   G +     
Sbjct: 60  KEESINTILDFVEAKNR----GEVEKVFVTGCLSERYKPDLIREIPDVDQYFGTRDL--- 112

Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
           P LL++       +  DY  E   ER++     +       A+L I EGCD+ C+FC +P
Sbjct: 113 PILLKQ-------LGADYKHELIGERMTTTPKHF-------AYLKIAEGCDRPCSFCAIP 158

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256
             RG  IS  +  +V EA KL   GV E+ L+ Q++  + G  L  +K    DLL  L +
Sbjct: 159 LMRGKNISTPIENLVIEAEKLAKKGVKELILIAQDLT-YYGLDLY-KKRALGDLLLRLVK 216

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           + G+  +R   + P    + +++   +   +  Y+ +P+Q  +  ILK+M R  +  +  
Sbjct: 217 VDGIEWIRLHYAFPTGFPEDVLEIIKNEPKVCNYIDIPLQHINSDILKAMKRGTSHEKTN 276

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
            ++D+ R   P++AI +  IVGFPGET++ F+   + V    + +   F YS    T   
Sbjct: 277 ALLDKFREKVPNMAIRTTLIVGFPGETEERFQEMKEWVRTQRFDRLGCFTYSHEENTTAF 336

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS---- 432
            + + V + VK  R+  + +   +     N   +G+    + ++  KE    VGR+    
Sbjct: 337 VLEDNVQQEVKEARVEEIMELQSQISWEKNQEKIGKTFRCIFDR--KEGNYFVGRTEFDS 394

Query: 433 PWLQSVVLNSKN---HNIGDIIKVRITDVKISTLYGELVV 469
           P + + VL S       IG    +RIT  +   LYGE+V 
Sbjct: 395 PDVDNTVLVSAENTYLAIGTFENIRITSAEEFDLYGEVVT 434


>gi|313680806|ref|YP_004058545.1| SSU ribosomal protein s12p methylthiotransferase [Oceanithermus
           profundus DSM 14977]
 gi|313153521|gb|ADR37372.1| SSU ribosomal protein S12P methylthiotransferase [Oceanithermus
           profundus DSM 14977]
          Length = 443

 Score =  357 bits (917), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 132/461 (28%), Positives = 214/461 (46%), Gaps = 38/461 (8%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           +  +    S GC   + DS ++     + GY       +AD++V+NTC     + E+   
Sbjct: 1   MAAKVGFVSLGCPKALVDSEQILSRLKAAGYGFAADYAEADVVVVNTCGFITPSIEESLE 60

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +G            G +  VVV GC+     E I ++ P V  V GP    R+   + +
Sbjct: 61  AIGEA---------LGANGKVVVTGCLGAR-PEVIRKKYPQVIDVSGPAETERVLAAVAQ 110

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
               +R              L +V           A+L I EGCD  C+FC++P  RG  
Sbjct: 111 VAPPER-----------DPFLDLVPPQVKLTPRHYAYLKIAEGCDHKCSFCIIPQLRGGL 159

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNA------WRGKGLDGE--KCTFSDLLYSL 254
           +SR  ++V+ EA +L   G  E+ ++ Q+ +A       R     G   +   +DL+  L
Sbjct: 160 VSRDAAEVLAEAARLAAGGTRELLVIAQDSSAYGVDLGHRESDWAGRPVRAHLTDLVREL 219

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
           S +   VRL Y   +P      L+    +   L+PYL +P+Q  S R+L++M R   A  
Sbjct: 220 SGLVPWVRLHYVYPYPHV--RELLPLMAE-GRLLPYLDVPLQHASPRVLRAMRRPGGAES 276

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
           + + I   R+V P++AI S FIVGFPGET+DDF   ++ + +    +   F YSP  G  
Sbjct: 277 HLKTIREWRAVVPELAIRSSFIVGFPGETEDDFELLLEFLAEARLERVGVFTYSPVAGAA 336

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR--- 431
            + +   V E VK ER   + +  +   +  N A VG++++V++++   E G  VGR   
Sbjct: 337 ANELPGAVPEEVKQERRARVMELAQRLSLEKNRAKVGRVLDVILDEPADEPGVFVGRSYA 396

Query: 432 -SPWLQSVVLNSKN--HNIGDIIKVRITDVKISTLYGELVV 469
            SP +   V  + +    +G+I+ VRIT   +  L GE+V 
Sbjct: 397 DSPGIDGTVRVTSDGTVRVGEIVPVRITAADVYDLEGEVVA 437


>gi|258648341|ref|ZP_05735810.1| RNA modification enzyme, MiaB family [Prevotella tannerae ATCC
           51259]
 gi|260851506|gb|EEX71375.1| RNA modification enzyme, MiaB family [Prevotella tannerae ATCC
           51259]
          Length = 431

 Score =  357 bits (917), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 120/448 (26%), Positives = 205/448 (45%), Gaps = 34/448 (7%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDD--ADLIVLNTCHIREKAAEKVYSFL 84
             + + GC  N+ DS R+   F + G+   ++ +     + V+NTC     A E+  + +
Sbjct: 3   VDILTLGCSKNLVDSERLLHQFEAHGFTTYHNPEQTHGGIAVVNTCGFIAAAKEESINVI 62

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             +   K +    G    V V GC+++    E+    P V+   G   + +L + L +  
Sbjct: 63  LELCQQKEA----GNLKQVYVMGCLSERYMSELQEEIPQVDKFYGKFDWDQLLKGLSQR- 117

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
                    Y      ER       Y       A+L I EGCD+ C +C +P   G  IS
Sbjct: 118 ---------YDFRSANERQITTPPHY-------AYLKIAEGCDRKCAYCAIPLITGKHIS 161

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R +  ++ E R L++ GV E  ++ Q +  + G  L  ++C  ++L+  ++E  G+  +R
Sbjct: 162 RPIEDILAEVRTLVNQGVKEFQIIEQELT-YYGVDLYHKQC-IAELVEKIAETPGVEWVR 219

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
              ++P    D L++     D +  YL + +Q  SD +L+ M+R  T  E   +I ++R 
Sbjct: 220 LHYAYPNQFPDSLLEVISKHDNICNYLDIALQHISDNVLQRMHRHVTKQETIDLIRKMRE 279

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN-MLEQVD 383
             PDI I +  ++GFPGETD+DF   +  V +  + +  +F YS   GT  +N   + V 
Sbjct: 280 KVPDICIRTTLLLGFPGETDEDFEELLQFVKETRFNRLGAFVYSEEEGTYAANHYKDDVP 339

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVV 439
           E+VK ERL  L +  R      N   +G +++ +I+K   E    +GR+    P +   V
Sbjct: 340 ESVKQERLDRLMELQRGISEELNQELIGSVLKTIIDKQ--EGDYYIGRTAYDSPEVDGEV 397

Query: 440 L--NSKNHNIGDIIKVRITDVKISTLYG 465
               ++N  +G    V I D     LYG
Sbjct: 398 YINKAENLQVGKFYDVLIQDATDYDLYG 425


>gi|118496968|ref|YP_898018.1| tRNA-methylthiotransferase MiaB protein [Francisella tularensis
           subsp. novicida U112]
 gi|194324197|ref|ZP_03057971.1| conserved hypothetical protein [Francisella tularensis subsp.
           novicida FTE]
 gi|238066223|sp|A0Q4U9|RIMO_FRATN RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|118422874|gb|ABK89264.1| tRNA-methylthiotransferase MiaB protein [Francisella novicida U112]
 gi|194321644|gb|EDX19128.1| conserved hypothetical protein [Francisella tularensis subsp.
           novicida FTE]
          Length = 439

 Score =  357 bits (917), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 127/460 (27%), Positives = 204/460 (44%), Gaps = 40/460 (8%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           +P+  FV S GC  N+ DS R+     ++GY+ V+S D+AD++++NTC     A ++   
Sbjct: 4   IPKIGFV-SLGCPKNLVDSERIITKLKAEGYDLVDSYDNADMVIVNTCGFLNSAIDESLE 62

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +G              +  V+V GC+     + I  + P V  + GPQ Y     L+E 
Sbjct: 63  VIGEA---------IAENGKVLVTGCLGNK-ADLIKEKHPEVLSITGPQDYEN---LIEA 109

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
                 +   D+          +   G        ++L I EGC+  CTFC++P  RG  
Sbjct: 110 VHTHAPIFANDFVS-------LVPPQGIKLTPRHYSYLKISEGCNNTCTFCIIPDIRGKL 162

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-----RGKGLDGEK---CTFSDLLYSL 254
            SRS+  ++ EA KL + GV E+ ++ Q+ +A+        G+   K       DL  +L
Sbjct: 163 KSRSIDNIMKEAEKLKNAGVKELLVISQDTSAYGVDIKYKSGIWNNKEYQSNIIDLATAL 222

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
            ++    RL Y   +P       + A G    ++PYL +P+Q  S  +LK M R     +
Sbjct: 223 GDLDMWTRLHYVYPYPHVDKIVPLMAQG---KILPYLDVPLQHSSPEVLKRMKRPAHTQK 279

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
               I++ R + PDI I S FIVGFPGET+ DF   +D  +K    +   FKYS   G  
Sbjct: 280 TLDRINKWRDICPDITIRSTFIVGFPGETEADFEHLLDFAEKAQLDRVGCFKYSEVEGAK 339

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS-- 432
            +     + E VK +RL        +         VG   +V+I+   K++   +GR+  
Sbjct: 340 ANQFDNLISEEVKQQRLDEFMGLQAQISTDKLQRFVGTEQQVIIDAINKDENYAIGRTKY 399

Query: 433 --PWLQSVVLNSK----NHNIGDIIKVRITDVKISTLYGE 466
             P +   V+       N  +G+   V IT+     L  +
Sbjct: 400 DAPEVDGQVIIGDALERNLKVGEFATVEITESTEYDLIAD 439


>gi|170748057|ref|YP_001754317.1| MiaB-like tRNA modifying enzyme YliG [Methylobacterium
           radiotolerans JCM 2831]
 gi|238066400|sp|B1M6H4|RIMO_METRJ RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|170654579|gb|ACB23634.1| MiaB-like tRNA modifying enzyme YliG [Methylobacterium
           radiotolerans JCM 2831]
          Length = 448

 Score =  357 bits (917), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 130/470 (27%), Positives = 205/470 (43%), Gaps = 38/470 (8%)

Query: 13  MVSQIVDQCIVP---QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNT 69
           M +    +   P    +    S GC   + DS R+     ++GYE     D AD++++NT
Sbjct: 1   MTATPAPRGPAPGAAPKISFVSLGCPKALVDSERILTHLRAEGYELARRHDGADVVIVNT 60

Query: 70  CHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG 129
           C   + A  +  S +G              +  V+V GC+  A+ EEI  + P +  V G
Sbjct: 61  CGFLDSAKAESLSAIGEA---------MAENGRVIVTGCMG-AQPEEIREKYPDLLAVTG 110

Query: 130 PQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKF 189
           PQ Y  +   +  A              D F  L    G     R   A+L I EGC   
Sbjct: 111 PQAYESVVAAVHEA---------VPPAHDPFLDLVPPQGIKLTPRHY-AYLKISEGCSNR 160

Query: 190 CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE------ 243
           C+FC++P  RG  +SR  + V+ EA KL+  GV E+ ++ Q+ +A+       E      
Sbjct: 161 CSFCIIPSLRGNLVSRPAADVLREAEKLVKAGVKELLVVSQDTSAYGVDIRYSESPWRDR 220

Query: 244 --KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
             +  F DL   L E+   VRL Y   +P       + A G    ++PYL +P+Q  S  
Sbjct: 221 QVRAKFYDLTRELGELGAWVRLHYVYPYPHVDEVIPLMAEG---KVLPYLDMPLQHASPS 277

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
           +LK M R          I   R   PD+AI S FIVGFPGET+ +F   +  + +    +
Sbjct: 278 VLKRMRRPGNQERQLDRIRSWRQTCPDLAIRSTFIVGFPGETEAEFEELLAWLQEAKLDR 337

Query: 362 AFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-- 419
              F+Y P  G   + + + V   VKAER     +      +    A VG+ + V+++  
Sbjct: 338 VGCFEYEPVAGATANALGDPVPPAVKAERKRRFMETQNGIALRLQRAKVGKRLPVIVDSV 397

Query: 420 KHGKEKGKLVGRSPWLQSVVLNS--KNHNIGDIIKVRITDVKISTLYGEL 467
           + G  +G+    +P +   V  +  +   +GDI+ V+I   +   LYG +
Sbjct: 398 EGGVARGRSKADAPEIDGTVHAAFRRPVRVGDIVTVKIDRAEAYDLYGSV 447


>gi|71737831|ref|YP_275930.1| ribosomal protein S12 methylthiotransferase [Pseudomonas syringae
           pv. phaseolicola 1448A]
 gi|257487030|ref|ZP_05641071.1| putative tRNA modifying protein [Pseudomonas syringae pv. tabaci
           ATCC 11528]
 gi|289625986|ref|ZP_06458940.1| putative tRNA modifying protein [Pseudomonas syringae pv. aesculi
           str. NCPPB3681]
 gi|289651498|ref|ZP_06482841.1| putative tRNA modifying protein [Pseudomonas syringae pv. aesculi
           str. 2250]
 gi|298488227|ref|ZP_07006262.1| methylthiotransferase [Pseudomonas savastanoi pv. savastanoi NCPPB
           3335]
 gi|123747566|sp|Q48FA7|RIMO_PSE14 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|71558384|gb|AAZ37595.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Pseudomonas
           syringae pv. phaseolicola 1448A]
 gi|298157235|gb|EFH98320.1| methylthiotransferase [Pseudomonas savastanoi pv. savastanoi NCPPB
           3335]
 gi|320323072|gb|EFW79161.1| ribosomal protein S12 methylthiotransferase [Pseudomonas syringae
           pv. glycinea str. B076]
 gi|330868590|gb|EGH03299.1| ribosomal protein S12 methylthiotransferase [Pseudomonas syringae
           pv. aesculi str. 0893_23]
 gi|331009328|gb|EGH89384.1| ribosomal protein S12 methylthiotransferase [Pseudomonas syringae
           pv. tabaci ATCC 11528]
          Length = 447

 Score =  357 bits (917), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 133/467 (28%), Positives = 213/467 (45%), Gaps = 37/467 (7%)

Query: 17  IVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA 76
            V     P+  FV S GC   + DS R+      +GYE V + +DAD++V+NTC   + A
Sbjct: 3   TVTTPSAPKVGFV-SLGCPKALVDSERILTQLRMEGYEVVATYEDADVVVVNTCGFIDTA 61

Query: 77  AEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL 136
             +    +G         IKE G   V+V GC+   +   I    P V  V GPQ Y ++
Sbjct: 62  KAESLEVIGEA-------IKENG--KVIVTGCMG-VDANVIRDVHPSVLSVTGPQQYEQV 111

Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
              +      ++  +    +        +   G        A+L I EGC+  C+FC++P
Sbjct: 112 VNAVHDVVPPRKDHNPLIDL--------VPPQGVKLTPRHYAYLKISEGCNHSCSFCIIP 163

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFS 248
             RG  +SR +  V+DEA++L+ +GV E+ ++ Q+ +A+      R    DG+  K   +
Sbjct: 164 SMRGKLVSRPVGDVLDEAKRLVKSGVKELLVISQDTSAYGVDVKYRTGFWDGQPVKTRMT 223

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
           +L  +L  +   VRL Y   +P       + A G    ++PYL +P Q  S +ILK M R
Sbjct: 224 ELCQALGSMGVWVRLHYVYPYPHVDELIPLMAAG---KILPYLDIPFQHASPKILKLMKR 280

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
                +    I   R   PD+ I S FIVGFPGET++DF+  +D + +    +   F+YS
Sbjct: 281 PAFEDKTLARIKNWREQCPDLIIRSTFIVGFPGETEEDFQYLLDWLTEAQLDRVGCFQYS 340

Query: 369 PRLGTPGSNMLEQ-VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-- 425
           P  G P + +    V ++VK +R        +    +     +G+ IEVLI++       
Sbjct: 341 PVEGAPANLLDAAIVPDDVKQDRWDRFMAHQQAISAARLQMKIGKEIEVLIDEVDDRGAV 400

Query: 426 GKLVGRSPWLQSVVL----NSKNHNIGDIIKVRITDVKISTLYGELV 468
           G+    +P +   V            GD I  R+TD     L+ E++
Sbjct: 401 GRCFFDAPEIDGNVFIGLEEGSTVQPGDKIMCRVTDADEYDLWAEML 447


>gi|332248856|ref|XP_003273581.1| PREDICTED: CDK5 regulatory subunit-associated protein 1 isoform 2
           [Nomascus leucogenys]
          Length = 546

 Score =  357 bits (916), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 128/458 (27%), Positives = 214/458 (46%), Gaps = 73/458 (15%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ ++++YGCQMNV D+     +    GY R +++ +AD+I+L TC IREKA + +++ L
Sbjct: 136 RKVYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCSIREKAEQTIWNRL 195

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            +++ LK  R +    L + + GC+A+   EEIL R  +V+++ GP  Y  LP+LL  A 
Sbjct: 196 HQLKALKTRRPRSRVPLKIGILGCMAERLKEEILNREKMVDILAGPDAYRDLPQLLAVAE 255

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G++  +   S+++ +  +  V          +AF++I  GCD  C++C+VP+TRG E S
Sbjct: 256 SGQQAANVLLSLDETYADVMPVQTS---PSATSAFVSIMRGCDNMCSYCIVPFTRGRERS 312

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R ++ +++E +KL +                              +L  + E   + +  
Sbjct: 313 RPIASILEEVKKLSEQ-----------------------------VLQLIHERDNICKQI 343

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +  +                           QSGS R+L++M R ++   Y +++  IR 
Sbjct: 344 HLPA---------------------------QSGSSRVLEAMWRGYSREAYVELVHHIRE 376

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQVD 383
             P +++SSDFI GF GET++D   T+ L+ ++ Y   F F YS R  T     + + V 
Sbjct: 377 SIPGVSLSSDFIAGFCGETEEDHVQTVSLLREVQYNIGFLFAYSMRQKTRAYHRLKDDVP 436

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVLNS 442
           E VK  RL  L    RE+    N   VG    VL+E   K     L GR+     V+   
Sbjct: 437 EEVKLRRLEELITVFREEATKANQTSVGCTQLVLVEGLSKRSATDLCGRNDGNLKVIFPD 496

Query: 443 KN------------HNIGDIIKVRITDVKISTLYGELV 468
                            GD + V+IT     TL G ++
Sbjct: 497 AEMEDVNNPGLRVRAQPGDYVLVKITSASSQTLRGHVL 534


>gi|188527075|ref|YP_001909762.1| conserved hypothetical ATP-binding protein [Helicobacter pylori
           Shi470]
 gi|188143315|gb|ACD47732.1| conserved hypothetical ATP-binding protein [Helicobacter pylori
           Shi470]
          Length = 426

 Score =  357 bits (916), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 138/439 (31%), Positives = 234/439 (53%), Gaps = 23/439 (5%)

Query: 36  MNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRI 95
           MN  DS  +        Y+  +    ADLI++NTC +REK   K++S +G+   +K    
Sbjct: 1   MNSRDSEHLLSELSKLDYKETSDPKAADLILINTCSVREKPERKLFSEIGQFAKIKK--- 57

Query: 96  KEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYS 155
               +  + V GC A   G +IL+++P V+ V+G +   ++ +++ + +  +  +D D S
Sbjct: 58  ---PNAKIGVCGCTASHMGADILKKAPSVSFVLGARNVSKISQVIHKEKAVEVAIDYDES 114

Query: 156 VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEAR 215
                   +     + +K  + + L I  GCDK C +C+VP+TRG EIS  +  ++ EA 
Sbjct: 115 --------AYAFEFFEKKAQIRSLLNISIGCDKKCAYCIVPHTRGKEISIPMDLILKEAE 166

Query: 216 KLIDNGVCEITLLGQNVNAWRGKGL-DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMS 274
           KL  NG  E+ LLGQNVN +  +   +  K  FSDLL  LSEI+G+ R+R+T+ HP  M+
Sbjct: 167 KLASNGTKELMLLGQNVNNYGARFSSEHAKVDFSDLLDKLSEIQGIERIRFTSPHPLHMN 226

Query: 275 DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSD 334
           D  ++       +   +H+P+QSGS  +LK M R ++   +   +++++++ P++ IS+D
Sbjct: 227 DAFLERFAKNPKVCKSIHMPLQSGSSTVLKMMRRGYSKEWFLNRVEKLKALVPEVGISTD 286

Query: 335 FIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCL 394
            IVGFP E+D DF  TM++++K+ +   +SF YSPR  T      E+V   V + RL  L
Sbjct: 287 IIVGFPNESDKDFEDTMEVLEKVRFDTLYSFIYSPRPFTEAGAWKERVPLEVSSSRLERL 346

Query: 395 QKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV---GRSPWLQSVVLN-SKNHNIGDI 450
           Q + +E         VG+   VL+E   +   ++V   GRS   + + +   +  N G++
Sbjct: 347 QNRHKEILEEKAKLEVGKTHVVLVENRREIDNQIVGFEGRSDTGKFIEVACKEKRNPGEL 406

Query: 451 IKVRITDVKISTLYGELVV 469
           ++V I         G L+ 
Sbjct: 407 VRVEIVSHS----KGRLIA 421


>gi|291525036|emb|CBK90623.1| MiaB-like tRNA modifying enzyme [Eubacterium rectale DSM 17629]
          Length = 434

 Score =  357 bits (916), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 132/435 (30%), Positives = 215/435 (49%), Gaps = 18/435 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++  + + GC++N Y++  M+ +    GYE V     AD+ V+NTC +   A  K    L
Sbjct: 2   KKAALHNLGCKVNAYETEAMQHLLEEAGYEIVPFTQKADVYVINTCSVTNMADRKSRQML 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA- 143
            + +       K   D +VV AGC  Q   +E+L     V++V+G    + L  LLE   
Sbjct: 62  HKAK-------KNNPDSIVVAAGCYVQTSEKEVLNDLS-VDIVIGNDRKHDLVRLLEEYS 113

Query: 144 -RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
                  VD     +  FE L I       K    AF+ +Q+GC++FC++C++PY RG  
Sbjct: 114 LDSVNDTVDDINDGKHDFEELFIDQ----TKEHTRAFIKVQDGCNQFCSYCIIPYARGRV 169

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR    V+ E  +L  NG  E+ L G ++++  G   + E     +L+ +++ +KG+ R
Sbjct: 170 RSRRFENVIAEVERLAANGFKEVVLTGIHLSS-YGVDFE-EATGLLELIQAVNAVKGIER 227

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R  +  P+ +++        LD + P+ HL +QSG D  LK MNR++T  EY +  + +
Sbjct: 228 IRLGSLEPKIVTEHFASELSKLDKICPHFHLSLQSGCDETLKRMNRKYTTKEYERGCELL 287

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R      AI++D IVGFPGET+++F  T   ++ I + +   FKYS R GT  + M +Q+
Sbjct: 288 RKYFVHPAITTDVIVGFPGETEEEFEQTKAYLEHIHFYEMHIFKYSKRKGTRAAVMPDQI 347

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG--KEKGKLVGRSPWLQSVVL 440
           DE +KA R   L     +    F    +G+  EVL E+     +K   VG +     V  
Sbjct: 348 DEQIKAARSEKLIALGHDMSKEFRKFYIGKNEEVLFEEKAVIGDKEYFVGYTKEYVKVAK 407

Query: 441 NSKNHNIGDIIKVRI 455
            +  +    I+  RI
Sbjct: 408 KTDENLENQIVSGRI 422


>gi|29840285|ref|NP_829391.1| MiaB-like tRNA modifying enzyme YliG [Chlamydophila caviae GPIC]
 gi|81584463|sp|Q823A0|RIMO_CHLCV RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|29834633|gb|AAP05269.1| MiaB-like tRNA modifying enzyme YliG [Chlamydophila caviae GPIC]
          Length = 460

 Score =  357 bits (916), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 125/458 (27%), Positives = 222/458 (48%), Gaps = 23/458 (5%)

Query: 20  QCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEK 79
           Q     +    S GC  N+ DS  M  +    GYE   ++++AD ++LNTC   + A ++
Sbjct: 11  QATSKNKIHFISLGCSRNLVDSEVMLGILLKAGYEATETLEEADYLILNTCAFLKAARDE 70

Query: 80  VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL 139
              +L RI   K    K      +++ GC+     EE+    P ++ V+G      +   
Sbjct: 71  SKDYLQRIIKAKKESAK------IILTGCMVSKHKEELKPWLPYIHYVLGSGDVEHILSA 124

Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           +E    G+++    Y    +  R       Y       A+L I EGC K C FC++P  +
Sbjct: 125 IESKEAGEKLTSKSYLEMGEIPRKLSTPKHY-------AYLKIAEGCRKRCAFCIIPTIK 177

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSD-LLYSLSEIK 258
           G   S+SL Q++ E R L+  GV EI L+ Q++    GK L  ++ +  D +L  + +  
Sbjct: 178 GGLRSKSLDQIIKEFRLLLKMGVKEIILIAQDLG-DYGKDLSADRKSCLDSVLKEMLKEP 236

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           G   +R    +P ++ D +I        L+PY+ +P+Q  ++R+LKSM R  +  +   +
Sbjct: 237 GDYWIRMLYLYPDEVDDTIIDLMESDPRLLPYVDIPLQHINNRVLKSMLRTTSKEQILDL 296

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           + ++R+  P I I S FIVGFPGETD++F+  +D V +        F YS   G+  +NM
Sbjct: 297 LTKLRTRIPHIYIRSSFIVGFPGETDEEFQDLVDFVSEGWIDNLGIFSYSQEEGSVAANM 356

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-----GKLVGRSP 433
            +Q+ ++VK++RL  L +  ++     N   VGQI+E +I+ +  +       +  G++P
Sbjct: 357 ADQISQSVKSKRLKILSQTQKKNVEKHNKQLVGQIVEAVIDGYHPDSELLLTARFYGQAP 416

Query: 434 WLQSVVLNSKNHNI---GDIIKVRITDVKISTLYGELV 468
            +   ++ ++   +   G+   + IT      L G ++
Sbjct: 417 EVDPCIIVNEARLVSGFGERYLIEITGYVGYDLVGRVI 454


>gi|303233705|ref|ZP_07320359.1| MiaB-like protein [Finegoldia magna BVS033A4]
 gi|302495139|gb|EFL54891.1| MiaB-like protein [Finegoldia magna BVS033A4]
          Length = 430

 Score =  357 bits (916), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 140/431 (32%), Positives = 228/431 (52%), Gaps = 17/431 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++    + GC++N Y++  M ++F  +GYE  +  +  D+ VLNTC +   +  K    +
Sbjct: 2   KKVKFSTLGCKVNQYETEAMAELFVKKGYEITDDYN-CDVFVLNTCTVTNLSDRKSRQQI 60

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            +IR+       E  + ++ V GC +Q   +EI      VNV++G +    + EL E A+
Sbjct: 61  SKIRS-------ENSNAVIAVVGCYSQVSPDEIENIQ-GVNVILGTKYRKEIVELCELAK 112

Query: 145 FGKRVVDTDYSV--EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
              ++++   ++    +FE L+I            A++ IQEGC +FC++C++PY RG  
Sbjct: 113 SSNKIINKVENIGKNKEFEELTINTEH----SMTRAYIKIQEGCSQFCSYCIIPYARGPI 168

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR++  +V EA++L DNG  EI L G +V A  GK  D +     D++  ++ I  + R
Sbjct: 169 RSRNIRDIVLEAKRLADNGFKEIVLTGIHV-ASYGKDFDNKDIGLIDVIEDIANIDKIKR 227

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R ++  PR +    +     ++    + HL +QSGSD IL+SMNR++  + Y + I+ I
Sbjct: 228 IRLSSLEPRIVDKKFLDRLSQVEQFCDHFHLSLQSGSDSILQSMNRKYDTHLYERTINLI 287

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R   P+ AI++D IVGFPGETD+DF  T++ VDKI +++   FKYS R GT  S M  Q+
Sbjct: 288 REYYPNAAITTDIIVGFPGETDEDFEQTLNFVDKIKFSKIHVFKYSNRKGTVASKMKNQI 347

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
              VK ER   L +K +     F D  + Q I+VL E    + G + G +     V    
Sbjct: 348 PGLVKKERSQRLIEKSKYYTDKFLDNMLNQPIKVLFESKN-DNGFIKGYTTNYIRVKRQY 406

Query: 443 KNHNIGDIIKV 453
             +    II V
Sbjct: 407 NPNLSNKIIDV 417


>gi|209885320|ref|YP_002289177.1| hypothetical protein OCAR_6198 [Oligotropha carboxidovorans OM5]
 gi|238066423|sp|B6JF93|RIMO_OLICO RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|209873516|gb|ACI93312.1| conserved hypothetical protein [Oligotropha carboxidovorans OM5]
          Length = 440

 Score =  357 bits (916), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 121/458 (26%), Positives = 200/458 (43%), Gaps = 38/458 (8%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           VP +    S GC   + DS R+     ++GYE     D AD+++++TC   + A ++   
Sbjct: 5   VPPKISFVSLGCPKALVDSERIITRLRAEGYELARKHDGADIVIVSTCGFLDSAKQESLG 64

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +G              +  V+V GC+  AE E+I +  P +  + GPQ Y  + + + R
Sbjct: 65  AIGEA---------MAENGKVIVTGCMG-AEPEQIEKEYPNLLSITGPQQYESVLDAVHR 114

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           A                     +   G        A+L I EGC+  CTFC++P  RG  
Sbjct: 115 AL----------PPLHNPHLDLLPPQGIKLTPRHYAYLKISEGCNNRCTFCIIPKLRGDL 164

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE---------KCTFSDLLYS 253
           +SR    V+ EA KL+  GV E+ ++ Q+ +A  G  +            +  F DL   
Sbjct: 165 VSRPADDVLREAEKLVVAGVKELLVVSQDTSA-YGIDIKYAPSAWKDREVRARFVDLARE 223

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
           L E+   VRL+Y   +P       +        ++PYL +P Q  +  +LK M R     
Sbjct: 224 LGELGAWVRLQYVYPYPHVDDVIPLM----GGNILPYLDIPFQHANTEVLKRMRRPAAQD 279

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
           +    I + R   PD+ + S FIVGFPGET+ +F+  +D +D+    +   FKY P  G 
Sbjct: 280 KTLARIHKWREQCPDLTLRSTFIVGFPGETESEFQDLLDWLDEAQIDRLGCFKYEPVAGA 339

Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE--KGKLVGR 431
             + +   V + +K  R   L  + ++         VG   +V+I++ G    KG+    
Sbjct: 340 TSNALENPVPDEIKTARWNALMARQQKISAQRLKRKVGTRQQVIIDEVGPSVAKGRSKAD 399

Query: 432 SPWLQSVVLNSK--NHNIGDIIKVRITDVKISTLYGEL 467
           +P +   V  +      +GDI+ V+I       L+G +
Sbjct: 400 APQIDGSVYVASRRPLKVGDIVTVKIERADEYDLHGSV 437


>gi|254373812|ref|ZP_04989295.1| hypothetical protein FTDG_01596 [Francisella novicida GA99-3548]
 gi|151571533|gb|EDN37187.1| hypothetical protein FTDG_01596 [Francisella novicida GA99-3548]
          Length = 439

 Score =  357 bits (916), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 126/460 (27%), Positives = 204/460 (44%), Gaps = 40/460 (8%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           +P+  FV S GC  N+ DS R+     ++GY+ V+S D+AD++++NTC     A ++   
Sbjct: 4   IPKIGFV-SLGCPKNLVDSERIITKLKAEGYDLVDSYDNADMVIVNTCGFLNSAIDESLD 62

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +G              +  V+V GC+     + I  + P V  + GPQ Y     L+E 
Sbjct: 63  VIGEA---------IAENGKVLVTGCLGNK-ADLIKEKHPEVLSITGPQDYEN---LIEA 109

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
                 +   D+          +   G        ++L I EGC+  CTFC++P  RG  
Sbjct: 110 VHTHAPIFANDFVS-------LVPPQGIKLTPRHYSYLKISEGCNNTCTFCIIPDIRGKL 162

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-----RGKGLDGEK---CTFSDLLYSL 254
            SRS+  ++ EA KL + GV E+ ++ Q+ +A+        G+   K       DL  +L
Sbjct: 163 KSRSIDNIMKEAEKLKNAGVKELLVISQDTSAYGVDIKYKSGIWNNKEYQSNILDLATAL 222

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
            ++    RL Y   +P       + A G    ++PYL +P+Q  S  +LK M R     +
Sbjct: 223 GDLDMWTRLHYVYPYPHVDKIVPLMAQG---KILPYLDVPLQHSSPEVLKRMKRPAHTQK 279

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
               I++ R + PDI I S FIVGFPGET+ DF   +D  +K    +   FKYS   G  
Sbjct: 280 TLDRINKWRDICPDITIRSTFIVGFPGETEADFEHLLDFAEKAQLDRVGCFKYSEVEGAK 339

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS-- 432
            +     + E +K +RL        +         VG   +V+I+   K++   +GR+  
Sbjct: 340 ANQFDNLISEEIKQQRLDEFMGLQAQISADKLQRFVGTEQQVIIDVINKDENYAIGRTKY 399

Query: 433 --PWLQSVVLNSK----NHNIGDIIKVRITDVKISTLYGE 466
             P +   V+       N  +G+   V IT+     L  +
Sbjct: 400 DAPEVDGQVIIGDALERNLKVGEFATVEITESTEYDLIAD 439


>gi|148653600|ref|YP_001280693.1| ribosomal protein S12 methylthiotransferase [Psychrobacter sp.
           PRwf-1]
 gi|238066576|sp|A5WGF2|RIMO_PSYWF RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|148572684|gb|ABQ94743.1| MiaB-like tRNA modifying enzyme YliG [Psychrobacter sp. PRwf-1]
          Length = 524

 Score =  357 bits (916), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 127/475 (26%), Positives = 209/475 (44%), Gaps = 33/475 (6%)

Query: 11  AHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC 70
           A   S    + + P+  FV S GC   + DS R+       GY   +  + ADL+V+NTC
Sbjct: 54  AAEQSLHTAETVAPKVGFV-SLGCPKALVDSERIITELTRDGYRVASDYNGADLVVVNTC 112

Query: 71  HIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGP 130
              E A ++    +G              +  V+V GC+   + ++I    P V  V G 
Sbjct: 113 GFIESAVQESLDAIGEA---------LNKNGKVIVTGCLG-KDAQKIRDMHPAVLAVTGA 162

Query: 131 QTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190
             Y  +   +       + +    + + K + + +   G        A+L I EGC+  C
Sbjct: 163 HAYDEVITAVSTHAPMPQAIQDKKAYDPKIDLIDLA--GVKLTPSHYAYLKISEGCNHRC 220

Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE- 243
           TFC++P  RG  +SR + QV+ EA  L   GV EI ++ Q+ +A+      +    DG  
Sbjct: 221 TFCIIPSLRGDLLSRPIEQVMGEAMALKKAGVKEILVISQDTSAYGVDLKYKTSFWDGMP 280

Query: 244 -KCTFSDLLYSLSEIKGLVRLRYTTSHP-RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
            K  F D+  +L+++   VRL Y   +P  D    L+   GD   L+PYL +P+Q  S  
Sbjct: 281 LKSKFFDMCQALAKVGIWVRLHYVYPYPHVDKVVELMAKPGDRGGLLPYLDIPLQHASPS 340

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
           +LK+M R   +      I + R + PDI I S F+VGFPGET++DF   ++ + +    +
Sbjct: 341 VLKAMKRPAHSENTLARIQKWREINPDIVIRSTFVVGFPGETEEDFEYLLEWLKQAKLDR 400

Query: 362 AFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKH 421
              F YS   G   +++   V E +K ER        ++         VG+ + VL+++ 
Sbjct: 401 VGCFTYSEIEGAVANDLPNPVPEAIKQERYERFMAVQQQISEQKLQEKVGKTMTVLVDEI 460

Query: 422 GKEKGKLVGRS----PWLQSVVLNSK-------NHNIGDIIKVRITDVKISTLYG 465
             E+   + RS    P +   V              +GD++ V I +     L+ 
Sbjct: 461 DTEEQIAICRSYADAPEIDGHVYVDNIVQNGMMMVKVGDMLTVTIDEASEYDLFA 515


>gi|15895089|ref|NP_348438.1| Fe-S oxidoreductase [Clostridium acetobutylicum ATCC 824]
 gi|81530279|sp|Q97I40|RIMO_CLOAB RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|15024787|gb|AAK79778.1|AE007690_5 Predicted Fe-S oxidoreductase [Clostridium acetobutylicum ATCC 824]
 gi|325509227|gb|ADZ20863.1| Fe-S oxidoreductase [Clostridium acetobutylicum EA 2018]
          Length = 445

 Score =  357 bits (916), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 124/449 (27%), Positives = 215/449 (47%), Gaps = 21/449 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +F + S GC  N  DS  +        YE VN   +AD+I++NTC   E A ++  + + 
Sbjct: 5   KFGLVSLGCDKNRVDSEIILGSMNRD-YEIVNDPREADVILVNTCGFIESAKQESINTIL 63

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +   K          +++  GC+ Q  G+E+    P ++ ++G   Y  L + +E    
Sbjct: 64  EMNKYKEKY----NCKMLIATGCLTQRYGKELKELVPEIDAILGVNDYKSLDDAIEDFFN 119

Query: 146 -GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            GK+ +  +YS +   E   I+  G       ++++ I EGC+  C++C++P  RG   S
Sbjct: 120 LGKKDIYCNYSDQSINEGKRIITTGE-----YSSYVRISEGCNNSCSYCIIPKIRGKYRS 174

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R    ++DE R+L +NG  E+ L+ Q+     G  L G K    +LL  +S I+G+  +R
Sbjct: 175 RQFENIIDEVRELSENGTKEVILIAQDTT-RYGVDLYGRK-RLHELLKEMSLIQGIEWIR 232

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
               +P ++++ LI+     + +  Y+ +P+Q  SD ILK+M R+    E    +++IR 
Sbjct: 233 IMYCYPEEITEELIEEIASNEKVCNYIDMPIQHISDNILKNMFRKTRKSEILDKVEKIRK 292

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             P+IAI +  IVGFPGET+ DF    D V          F+YS   GT  + M  Q+ +
Sbjct: 293 KVPNIAIRTSLIVGFPGETEGDFNELCDFVKDANINNLGVFRYSREEGTKAALMPMQIAD 352

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQS-VV 439
            VK +R   +    ++   + N   +G++ +V++E          GR    +P +   V 
Sbjct: 353 TVKEKREEDIMLIQQQVSKNLNAKKIGKVYKVIVEGFN--GDYWYGRNFEMAPEIDGKVF 410

Query: 440 LNS-KNHNIGDIIKVRITDVKISTLYGEL 467
             S     +G  I ++IT+     L G +
Sbjct: 411 FKSQSEIKVGSFINIKITENLEYDLIGVV 439


>gi|317013714|gb|ADU81150.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Helicobacter
           pylori Gambia94/24]
          Length = 426

 Score =  357 bits (916), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 138/435 (31%), Positives = 234/435 (53%), Gaps = 19/435 (4%)

Query: 36  MNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRI 95
           MN  DS  +        Y+  +    ADLI++NTC +REK   K++S +G+   +K    
Sbjct: 1   MNSRDSEHLLSELSKLDYKETSDPKMADLILINTCSVREKPERKLFSEIGQFAKIKK--- 57

Query: 96  KEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYS 155
               +  + V GC A   G +IL+++P V+ V+G +   ++ +++ + +  +  +D D S
Sbjct: 58  ---PNAKIGVCGCTASHMGADILKKAPSVSFVLGARNVSKISQVIHKEKAVEVAIDYDES 114

Query: 156 VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEAR 215
                   +     + +K  + + L I  GCDK C +C+VP+TRG EIS  +  ++ EA 
Sbjct: 115 --------AYAFEFFEKKAQIRSLLNISIGCDKKCAYCIVPHTRGKEISIPMDLILKEAE 166

Query: 216 KLIDNGVCEITLLGQNVNAWRGKGL-DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMS 274
           KL +NG  E+ LLGQNVN +  +   +  K  FSDLL  LSEI+G+ R+R+T+ HP  M+
Sbjct: 167 KLANNGTKELMLLGQNVNNYGVRFSSEHAKVDFSDLLDKLSEIQGIERIRFTSPHPLHMN 226

Query: 275 DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSD 334
           D  ++       +   +H+P+QSGS  +LK M R ++   +   +++++++ P++ IS+D
Sbjct: 227 DAFLERFAKNPKVCKSIHMPLQSGSSAVLKMMRRGYSKEWFLNRVEKLKALVPEVGISTD 286

Query: 335 FIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCL 394
            IVGFP E+D DF  TM++++K+ +   +SF YSPR  T      E+V   V + RL  L
Sbjct: 287 IIVGFPNESDKDFEDTMEVLEKVRFDTLYSFIYSPRPFTEAGAWKERVPLEVSSSRLERL 346

Query: 395 QKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV---GRSPWLQSVVLN-SKNHNIGDI 450
           Q + +E         VG+   VL+E   +  G++V   GRS   + + +   +  N G++
Sbjct: 347 QNRHKEILEEKAKLEVGKTHVVLVENRREMDGQIVGFEGRSDTGKFIEVTCKEKRNPGEL 406

Query: 451 IKVRITDVKISTLYG 465
           ++V I       L  
Sbjct: 407 VRVEIISHSKGRLMA 421


>gi|329954832|ref|ZP_08295849.1| ribosomal protein S12 methylthiotransferase RimO [Bacteroides
           clarus YIT 12056]
 gi|328526936|gb|EGF53947.1| ribosomal protein S12 methylthiotransferase RimO [Bacteroides
           clarus YIT 12056]
          Length = 432

 Score =  357 bits (916), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 112/454 (24%), Positives = 197/454 (43%), Gaps = 35/454 (7%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEKVYS 82
           +   + + GC  N+ DS  +       G+   +  +     + V+NTC     A E+  +
Sbjct: 4   KTIDIITLGCSKNLVDSEHLMRQLEEAGFHVTHDAERPKGQIAVINTCGFIGDAKEESIN 63

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +      K      G    + V GC+++   +E+    P V+   G   +  L + L +
Sbjct: 64  MILEFAQAKEE----GSLEKLYVMGCLSERYLKELAIEIPQVDKFYGKFNWKELLQDLGK 119

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           A          Y  E   ER       Y       A+L I EGCD+ C++C +P   G  
Sbjct: 120 A----------YHDELHIERTLTTPRHY-------AYLKISEGCDRKCSYCAIPIITGRH 162

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           ISR + +++DE + L+  GV E  ++ Q +  + G  L  +K    +L+  +SEI G+  
Sbjct: 163 ISRPMEEILDEVKYLVARGVKEFQVIAQELT-YYGVDLY-KKQMLPELIERISEIPGVEW 220

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R   ++P      L +   +   +  Y+ + +Q  SD +L  M R  T  E  ++I++ 
Sbjct: 221 IRLHYAYPAHFPMDLFRVMRERPNVCKYMDIALQHISDNMLDKMRRHVTKEETYRLIEKF 280

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R   P I + +  +VG PGET+ DF    + V K+ + +  +F YS    T  +   E V
Sbjct: 281 REEVPGIHLRTTLMVGHPGETEADFEELKEFVRKVRFDRMGAFAYSEEERTYAAAHYEDV 340

Query: 383 -DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQS 437
             + VK  RL  L    +      + A VG+ ++V+I++   E    +GR+    P +  
Sbjct: 341 IPQEVKQARLDELMSIQQGISAELSAAKVGKRMDVIIDRL--EGDYYIGRTEFDSPEVDP 398

Query: 438 VVLNSKNHN---IGDIIKVRITDVKISTLYGELV 468
            VL         IG+  +V I +     L+G ++
Sbjct: 399 EVLIECGDKVLEIGNFYRVEIINSDDFDLFGRVL 432


>gi|154482583|ref|ZP_02025031.1| hypothetical protein EUBVEN_00250 [Eubacterium ventriosum ATCC
           27560]
 gi|149736608|gb|EDM52494.1| hypothetical protein EUBVEN_00250 [Eubacterium ventriosum ATCC
           27560]
          Length = 437

 Score =  357 bits (916), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 129/442 (29%), Positives = 218/442 (49%), Gaps = 26/442 (5%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++  + + GC++N Y++  M  +    GYE V+  D AD+ ++NTC +   A  K    L
Sbjct: 2   RKAALHNLGCKVNSYETEAMTQLLKKAGYEIVSFQDQADVYIINTCSVTNMADRKSRQML 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA- 143
            + +       K+  + +VV  GC  Q   E++ +    +++VVG      + E+L    
Sbjct: 62  HKAK-------KQNPNAVVVATGCYVQTATEKVAQDLS-IDLVVGNNRKKDIVEILNEYY 113

Query: 144 ---RFGKRVVD---TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197
                G++V +    D +  D++E L I            A L IQ+GC+ FC++C++PY
Sbjct: 114 AEKEAGEQVKEEYVIDINHTDEYEDLEISTV----TEHTRAHLKIQDGCNNFCSYCIIPY 169

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257
            RG   SR++  +  E  +L  +G  EI L G N++ +     D       D++     +
Sbjct: 170 ARGRIRSRTMESIKAELERLSASGFKEIVLTGINLSCY-----DDNGKKLIDVIEMADNV 224

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
            G+ R+R  +  P  +++  ++  G +  + P+ H  +QSG D+ LK+MNR +T+ EY +
Sbjct: 225 NGIERIRLGSLDPEVVTEDFVERLGKVKKICPHFHFSLQSGCDKTLKAMNRHYTSDEYYE 284

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
               IR    + A ++D IVGFPGET++D+ ++ + V K+ +A+   FKYS R GT  + 
Sbjct: 285 KCQLIRKYIDNPAFTTDVIVGFPGETEEDYISSREFVKKVKFAELHVFKYSKRDGTVAAK 344

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG--KEKGKLVGRSPWL 435
           M  Q+DE +K  R   L K   E    F  A +GQ   VL E+      K   VG +   
Sbjct: 345 MPNQIDEKIKTLRSEDLIKTGEELTKEFRQAKIGQDTTVLFEEKILLDNKEYWVGHTVDY 404

Query: 436 QSVVLNSKNHNIGDIIKVRITD 457
             + +  K +  G I KV + D
Sbjct: 405 IKIAVPEKENLEGQIRKVNVKD 426


>gi|86142306|ref|ZP_01060816.1| putative Fe-S oxidoreductase [Leeuwenhoekiella blandensis MED217]
 gi|85831058|gb|EAQ49515.1| putative Fe-S oxidoreductase [Leeuwenhoekiella blandensis MED217]
          Length = 435

 Score =  357 bits (916), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 123/459 (26%), Positives = 214/459 (46%), Gaps = 33/459 (7%)

Query: 17  IVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA 76
           +  + +   +  V + GC  NVYDS  +     +   E V+  ++ +++V+NTC     A
Sbjct: 1   MRTKTLKKNKINVVTLGCSKNVYDSEVLMGQLKANQKEVVH-EEEGNVVVINTCGFIANA 59

Query: 77  AEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL 136
            E+  + +      K     +G    V V GC+++    ++ +  P V+   G      L
Sbjct: 60  KEESVNTILEYVQKKE----DGIVDKVFVTGCLSERYKPDLQKEIPNVDQYFGT---TEL 112

Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
           P LL       + +  DY  E   ERL+     Y       A+L I EGCD+ C+FC +P
Sbjct: 113 PGLL-------KALGADYKHELIGERLTTTPKNY-------AYLKIAEGCDRPCSFCAIP 158

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256
             RG   S  +  +V EA+KL  +G+ E+ L+ Q++  + G  L  E+   + LL  L +
Sbjct: 159 LMRGGHKSTPIEHLVTEAKKLAASGIKELILIAQDLT-YYGLDLYKERA-LAKLLRELVK 216

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           ++G+  +R   + P      ++    +   +  Y+ +P+Q  S ++LKSM R  T  +  
Sbjct: 217 VEGIEWIRLHYAFPTGFPMDVLDVMNEEPKVCNYIDIPLQHISTKLLKSMRRGTTYEKTN 276

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
            ++   R   P +AI +  IVG+PGET +DF    D V ++ + +   F YS    T   
Sbjct: 277 ALLKTFREKVPQMAIRTTLIVGYPGETQEDFELLRDWVKEMRFERLGCFTYSHEENTHAY 336

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS---- 432
           N+ + V E VK ER   +     +     N   +G+   ++I++  KE    VGR+    
Sbjct: 337 NLEDDVPEEVKMERANEIMALQSQISWELNQEKIGKEYRIVIDR--KEGNYFVGRTEFDS 394

Query: 433 PWLQS-VVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468
           P + + V++++  H +  G+   V+ITD +   LY   V
Sbjct: 395 PDVDNEVLIDATQHYLKTGEYTWVKITDAEDFDLYAAPV 433


>gi|302380512|ref|ZP_07268977.1| MiaB-like protein [Finegoldia magna ACS-171-V-Col3]
 gi|302311455|gb|EFK93471.1| MiaB-like protein [Finegoldia magna ACS-171-V-Col3]
          Length = 430

 Score =  357 bits (916), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 140/431 (32%), Positives = 228/431 (52%), Gaps = 17/431 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++    + GC++N Y++  M ++F  +GYE  +  +  D+ VLNTC +   +  K    +
Sbjct: 2   KKVKFSTLGCKVNQYETEAMAELFVKKGYEITDDYN-CDVFVLNTCTVTNLSDRKSRQQI 60

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            +IR+       E  + ++ V GC +Q   +EI      VNV++G +    + EL E A+
Sbjct: 61  SKIRS-------ENSNAVIAVVGCYSQVSPDEIENIQ-GVNVILGTKYRKEIVELCELAK 112

Query: 145 FGKRVVDTDYSV--EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
              ++++   ++    +FE L+I            A++ IQEGC +FC++C++PY RG  
Sbjct: 113 SSNKIINKVENIGKNKEFEELTINTEH----SMTRAYIKIQEGCSQFCSYCIIPYARGPI 168

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR++  +V EA++L DNG  EI L G +V A  GK  D +     D++  ++ I  + R
Sbjct: 169 RSRNIRDIVLEAKRLADNGFKEIVLTGIHV-ASYGKDFDNKDIGLIDVIEDIANIDKIKR 227

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R ++  PR +    +     ++    + HL +QSGSD IL+SMNR++  + Y + I+ I
Sbjct: 228 IRLSSLEPRIVDKKFLDRLSQVEQFCDHFHLSLQSGSDSILQSMNRKYDTHLYERTINLI 287

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R   P+ AI++D IVGFPGETD+DF  T++ VDKI +++   FKYS R GT  S M  Q+
Sbjct: 288 REYYPNAAITTDIIVGFPGETDEDFEQTLNFVDKIKFSKIHVFKYSNRKGTVASKMKNQI 347

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
              VK ER   L +K +     F D  + Q I+VL E    + G + G +     V    
Sbjct: 348 PGLVKKERSQRLIEKSKYYTDKFLDNMLNQPIKVLFESKN-DNGFIKGYTTNYIRVKRQY 406

Query: 443 KNHNIGDIIKV 453
             +    II V
Sbjct: 407 NPNLFNKIIDV 417


>gi|297588452|ref|ZP_06947095.1| 2-methylthioadenine synthetase [Finegoldia magna ATCC 53516]
 gi|297573825|gb|EFH92546.1| 2-methylthioadenine synthetase [Finegoldia magna ATCC 53516]
          Length = 430

 Score =  357 bits (916), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 140/429 (32%), Positives = 221/429 (51%), Gaps = 13/429 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++    + GC++N Y++  M ++F   GYE     +  D+ VLNTC +   +  K    +
Sbjct: 2   KKVKFSTLGCKVNQYETEAMAELFVKNGYEITEDYN-CDVFVLNTCTVTNLSDRKSRQQI 60

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            +IR+       E  D ++ V GC +Q   +EI      VNV++G +    + EL E A+
Sbjct: 61  SKIRS-------ENSDAIIAVVGCYSQVSPDEI-ENIEGVNVILGTKYRKEIVELCELAQ 112

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
              ++++   S+    E   +     +      +++ IQEGC +FC++C++PY RG   S
Sbjct: 113 SSNKIINKVESIGKNREFEELTINTEH--SMTRSYIKIQEGCSQFCSYCIIPYARGPIRS 170

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R++  +V EA++L DNG  EI L G +V A  GK LD       D++  + +I  + R+R
Sbjct: 171 RNIRDIVLEAKRLSDNGFKEIVLTGIHV-ASYGKDLDNNDIGLIDVIEDIGQIDKIKRIR 229

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
            ++  PR +    +     ++    + HL +QSGSD IL+SMNR++    Y + I+ IR 
Sbjct: 230 LSSLEPRIVDKQFLDRLSKVEQFCDHFHLSLQSGSDSILESMNRKYDTDLYEKTINLIRE 289

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             P+ AI++D IVGFPGETD+DF  T+  VDKI +++   FKYS R GT  S M  QV  
Sbjct: 290 YYPNAAITTDIIVGFPGETDEDFEQTLSFVDKIQFSKIHVFKYSNRKGTVASKMKNQVSG 349

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
            VK ER   L +K +     F D  + Q I+VL E    + G + G +     V      
Sbjct: 350 VVKKERSKLLIEKSKYYTDKFLDNMLNQPIKVLFESKN-DDGYIKGYTTNYIRVKREYNP 408

Query: 445 HNIGDIIKV 453
           +    II V
Sbjct: 409 NLSNKIIDV 417


>gi|88802666|ref|ZP_01118193.1| putative Fe-S oxidoreductase [Polaribacter irgensii 23-P]
 gi|88781524|gb|EAR12702.1| putative Fe-S oxidoreductase [Polaribacter irgensii 23-P]
          Length = 450

 Score =  357 bits (916), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 121/461 (26%), Positives = 220/461 (47%), Gaps = 34/461 (7%)

Query: 17  IVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNS--MDDADLIVLNTCHIRE 74
           +  + I   +  V + GC  N+YDS  +     + G   V+    DD +++V+NTC    
Sbjct: 1   MRTKTIKKNKINVVTLGCSKNIYDSEVLMGQLKANGKNVVHEDPEDDGNIVVINTCGFIG 60

Query: 75  KAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYY 134
           KA E+    +      K +    G    V V+GC+++    ++ +  P V+   G     
Sbjct: 61  KAKEESIDTILHYAKRKEA----GEIDKVFVSGCLSERYKPDLEKEIPNVDQYFGTHDL- 115

Query: 135 RLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCV 194
             P LL       +V++ DY  E   ERL+     Y       A+L I EGCD+ C+FC 
Sbjct: 116 --PNLL-------KVLEADYKHELIGERLTTTPKHY-------AYLKIAEGCDRPCSFCA 159

Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL 254
           +P  RG  +S  +  +V EA KL + G+ E+ L+ Q++  + G  +  +K   ++LL +L
Sbjct: 160 IPLMRGKHVSTPIEDIVTEATKLAEKGIKEVMLIAQDLT-YYGLDIY-KKRALAELLEAL 217

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
           + + G+  +R   + P      +++       +  YL +P+Q  +  +LKSM R  T  +
Sbjct: 218 ARVDGIEWIRMHYAFPTGFPMDVLEVMKREPKVCNYLDIPLQHINTELLKSMKRGTTHEK 277

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
              +I + R+  P +AI +  IVG+PGET+  F+   D V+++ + +  +F+YS    T 
Sbjct: 278 TTALIHKFRTAVPKMAIRTTLIVGYPGETEVMFQELKDWVEEMRFERLGAFEYSHEENTG 337

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS-- 432
              + + V   VK +R+  + +   +     N A +G+    L ++  K+     GR+  
Sbjct: 338 AYVLEDDVPAEVKFKRVNEIMELQSQISWELNQAKIGKTFRCLFDR--KDGEYFYGRTES 395

Query: 433 --PWLQS-VVLNSKNH--NIGDIIKVRITDVKISTLYGELV 468
             P + + V+++++ H   IG+ I ++I +     LYG  V
Sbjct: 396 DSPDVDNDVLVDAREHYVKIGEFIDIKIHEAGDYDLYGTPV 436


>gi|298484173|ref|ZP_07002339.1| 2-methylthioadenine synthetase [Bacteroides sp. D22]
 gi|298269677|gb|EFI11272.1| 2-methylthioadenine synthetase [Bacteroides sp. D22]
          Length = 436

 Score =  357 bits (916), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 108/454 (23%), Positives = 204/454 (44%), Gaps = 35/454 (7%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEKVYS 82
           +R  + + GC  N+ DS ++       GY   +  +    ++ V+NTC     A E+  +
Sbjct: 4   KRIDIITLGCSKNLVDSEQLMRQLEEVGYSVTHDTENPQGEIAVINTCGFIGDAKEESIN 63

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +      K      G    + V GC+++   +E+    P V+   G   +    ELL+ 
Sbjct: 64  MILEFAERKEE----GDLKKLFVMGCLSERYLKELAVEIPQVDKFYGKFNW---KELLQD 116

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
              G       Y  E   ER       Y       A+L I EGCD+ C++C +P   G  
Sbjct: 117 LGKG-------YHDELYIERTLTTPQHY-------AYLKISEGCDRKCSYCAIPIITGRH 162

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           IS+ + +++DE R L+  GV E  ++ Q +  + G     +K    +L+  +S+I G+  
Sbjct: 163 ISKPMEEILDEVRYLVSQGVKEFQVIAQELT-YYGIDRY-KKQMLPELIERISDIPGVEW 220

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R   ++P      L +   + D +  Y+ + +Q  SD +L+ M R+ +  +  ++I++ 
Sbjct: 221 IRLHYAYPAHFPTDLFRVMRERDNVCKYMDIALQHISDNMLQLMRRQVSKEDTYRLIEQF 280

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN-MLEQ 381
           R   P I + +  +VG PGET++DF    + V K+ + +  +F YS   GT  +    + 
Sbjct: 281 RKEVPGIHLRTTLMVGHPGETEEDFEELKEFVRKVRFDRMGAFAYSEEEGTYAAETYKDS 340

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQS 437
           + + VK  RL  L    +      +   +G+ ++++I++   E    +GR+    P +  
Sbjct: 341 IPQEVKQARLDELMDIQQGISAELSAEKIGKQMKIIIDRL--EGDYYIGRTEFDSPEVDP 398

Query: 438 VVLNS---KNHNIGDIIKVRITDVKISTLYGELV 468
            VL     +   IG   +V +T+     LY +++
Sbjct: 399 EVLVKRSERELKIGQFYQVEVTNADDFDLYAKII 432


>gi|91775949|ref|YP_545705.1| hypothetical protein Mfla_1596 [Methylobacillus flagellatus KT]
 gi|123254378|sp|Q1H0X3|RIMO_METFK RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|91709936|gb|ABE49864.1| SSU ribosomal protein S12P methylthiotransferase [Methylobacillus
           flagellatus KT]
          Length = 441

 Score =  357 bits (916), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 124/454 (27%), Positives = 202/454 (44%), Gaps = 39/454 (8%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC     DS R+     ++GY    S DDADL+V+NTC   + A E+    +G
Sbjct: 7   KVGFVSLGCPKASSDSERILTQLRAEGYAISGSYDDADLVVVNTCGFIDSAVEESLDAIG 66

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                            V+V GC+  A+ + +    P V  V GP     +   +     
Sbjct: 67  EALAENGK---------VIVTGCLG-AKSDVVKAAHPGVLAVTGPHALEEVMTAVHANLP 116

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                     + D +  L +   G        A+L I EGC+  C+FC++P  RG  +SR
Sbjct: 117 ---------KLHDPYTDL-VPPQGIRLTPQHYAYLKISEGCNHRCSFCIIPSMRGDLVSR 166

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYSLSEI 257
           S+  V+ EA  L++ GV E+ ++ Q+ +A+      R    +G   K   ++L  +L  +
Sbjct: 167 SIGDVMTEAENLVNAGVAELLVISQDTSAYGVDVKYRTGFWNGRPVKTRMTELARALGSL 226

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
              VR+ Y   +P       + A G   +++PYL +P+Q  S RILK+M R  ++     
Sbjct: 227 GVWVRMHYVYPYPHVDEIIPLMADG---LILPYLDVPLQHASPRILKAMKRPASSENNLA 283

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
            I+  R + PDI I S FIVGFPGETD+DF   ++ + +    +   F YS   G   + 
Sbjct: 284 RINAWREICPDITIRSTFIVGFPGETDEDFECLLEFLQEAQLDRVGCFAYSAVDGAAANA 343

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----P 433
           +   V E +K ERL    +             +G+I  VLI+    +  + +GR+    P
Sbjct: 344 LDNPVPEPLKQERLARFMEVQESISAEKQRRKIGRIETVLIDDI--DGDQAIGRTAADAP 401

Query: 434 WLQSVVL--NSKNHNIGDIIKVRITDVKISTLYG 465
            +  VV    +     GD+++ +I +     L+ 
Sbjct: 402 EIDGVVYLSGADGLQPGDLVEAQIVNSDGHDLWA 435


>gi|169824473|ref|YP_001692084.1| Fe-S oxidoreductase [Finegoldia magna ATCC 29328]
 gi|167831278|dbj|BAG08194.1| Fe-S oxidoreductase [Finegoldia magna ATCC 29328]
          Length = 430

 Score =  357 bits (916), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 139/429 (32%), Positives = 225/429 (52%), Gaps = 13/429 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++    + GC++N Y++  M ++F  +GYE  +  +  D+ VLNTC +   +  K    +
Sbjct: 2   KKVKFSTLGCKVNQYETEAMAELFVKKGYEITDDYN-CDVFVLNTCTVTNLSDRKSRQQI 60

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            +IR+       E  + ++ V GC +Q   +EI      VNV++G +    + EL E A+
Sbjct: 61  SKIRS-------ENSNAVIAVVGCYSQVSPDEIENIQ-GVNVILGTKYRKEIVELCELAK 112

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
              ++++   ++    E   +     +      A++ IQEGC +FC++C++PY RG   S
Sbjct: 113 SSNKIINKVENIGKNREFEELTINTEH--SMTRAYIKIQEGCSQFCSYCIIPYARGPIRS 170

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R++  +V EA++L DNG  EI L G +V A  GK  D +     D++  +S I  L R+R
Sbjct: 171 RNIRDIVLEAKRLADNGFKEIVLTGIHV-ASYGKDFDNKDIGLIDVIEDISNIDKLKRIR 229

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
            ++  PR +    +     ++    + HL +QSGSD IL+SMNR++  + Y + I+ IR 
Sbjct: 230 LSSLEPRIVDKKFLDRLSQVEQFCDHFHLSLQSGSDSILQSMNRKYDTHLYERTINLIRE 289

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             P+ AI++D IVGFPGETD+DF  T++ VDKI +++   FKYS R GT  S M  Q+  
Sbjct: 290 YYPNAAITTDIIVGFPGETDEDFEQTLNFVDKIKFSKIHVFKYSNRKGTVASKMKNQIPG 349

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
            VK ER   L +K +     F D  + Q I+VL E    + G + G +     V      
Sbjct: 350 LVKKERSQRLIEKSKYYTDKFLDNMLNQPIKVLFESKN-DNGFIKGYTTNYIRVKRQYNP 408

Query: 445 HNIGDIIKV 453
           +    II V
Sbjct: 409 NLSNKIIDV 417


>gi|320329656|gb|EFW85645.1| ribosomal protein S12 methylthiotransferase [Pseudomonas syringae
           pv. glycinea str. race 4]
          Length = 447

 Score =  357 bits (916), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 133/467 (28%), Positives = 214/467 (45%), Gaps = 37/467 (7%)

Query: 17  IVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA 76
            V     P+  FV S GC   + DS R+      +GYE V + +DAD++V+NTC   + A
Sbjct: 3   TVTTPSAPKVGFV-SLGCPKALVDSERILTQLRMEGYEVVATYEDADVVVVNTCGFIDTA 61

Query: 77  AEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL 136
             +    +G         IKE G   V+V GC+   +   I    P V  V GPQ Y ++
Sbjct: 62  KAESLEVIGEA-------IKENG--KVIVTGCMG-VDANVIRDVHPSVLSVTGPQQYEQV 111

Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
              +      ++  +    +        +   G        A+L I EGC+  C+FC++P
Sbjct: 112 VNAVHDVVPPRKDHNPLIDL--------VPPQGVKLTPRHYAYLKISEGCNHSCSFCIIP 163

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFS 248
             RG  +SR +  V+DEA++L+ +GV E+ ++ Q+ +A+      R    DG+  K   +
Sbjct: 164 SMRGKLVSRPVGDVLDEAKRLVKSGVKELLVISQDTSAYGVDVKYRTGFWDGQPVKTRMT 223

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
           +L  +L  +   VRL Y   +P       + A G    ++PYL +P Q  S +ILK M R
Sbjct: 224 ELCQALGSMGVWVRLHYVYPYPHVDELIPLMAAG---KILPYLDIPFQHASPKILKLMKR 280

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
                +    I   R   PD+ I S FIVGFPGET++DF+  +D + +    +   F+YS
Sbjct: 281 PAFEDKTLARIKNWREQCPDLIIRSTFIVGFPGETEEDFQYLLDWLTEAQLDRVGCFQYS 340

Query: 369 PRLGTPGSNMLEQ-VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-- 425
           P  G P + +    V ++VK +R        +    +     +G+ IEVLI++       
Sbjct: 341 PVEGAPANLLDAAIVPDDVKQDRWDRFMAHQQAISAARLQMKIGKEIEVLIDEVDDRGAV 400

Query: 426 GKLVGRSPWLQSVVL----NSKNHNIGDIIKVRITDVKISTLYGELV 468
           G+    +P +   V           +GD I  R+TD     L+ E++
Sbjct: 401 GRCFFDAPEIDGNVFIGLEEGSTVQLGDKIMCRVTDADEYDLWAEML 447


>gi|53723567|ref|YP_102978.1| ribosomal protein S12 methylthiotransferase [Burkholderia mallei
           ATCC 23344]
 gi|121600276|ref|YP_993126.1| putative tRNA modifying protein [Burkholderia mallei SAVP1]
 gi|124384882|ref|YP_001026098.1| putative tRNA modifying protein [Burkholderia mallei NCTC 10229]
 gi|126448468|ref|YP_001080632.1| putative tRNA modifying protein [Burkholderia mallei NCTC 10247]
 gi|238562635|ref|ZP_00440103.2| conserved hypothetical protein [Burkholderia mallei GB8 horse 4]
 gi|254178505|ref|ZP_04885160.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Burkholderia
           mallei ATCC 10399]
 gi|254199923|ref|ZP_04906289.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Burkholderia
           mallei FMH]
 gi|254206256|ref|ZP_04912608.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Burkholderia
           mallei JHU]
 gi|254358329|ref|ZP_04974602.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Burkholderia
           mallei 2002721280]
 gi|81604977|sp|Q62JZ1|RIMO_BURMA RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|238065305|sp|A3MK46|RIMO_BURM7 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|238065306|sp|A2S2C9|RIMO_BURM9 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|238065307|sp|A1V4H3|RIMO_BURMS RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|52426990|gb|AAU47583.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Burkholderia
           mallei ATCC 23344]
 gi|121229086|gb|ABM51604.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Burkholderia
           mallei SAVP1]
 gi|124292902|gb|ABN02171.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Burkholderia
           mallei NCTC 10229]
 gi|126241338|gb|ABO04431.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Burkholderia
           mallei NCTC 10247]
 gi|147749519|gb|EDK56593.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Burkholderia
           mallei FMH]
 gi|147753699|gb|EDK60764.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Burkholderia
           mallei JHU]
 gi|148027456|gb|EDK85477.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Burkholderia
           mallei 2002721280]
 gi|160699544|gb|EDP89514.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Burkholderia
           mallei ATCC 10399]
 gi|238522236|gb|EEP85682.1| conserved hypothetical protein [Burkholderia mallei GB8 horse 4]
          Length = 463

 Score =  356 bits (915), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 124/479 (25%), Positives = 210/479 (43%), Gaps = 48/479 (10%)

Query: 16  QIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREK 75
           +   + +   +  + S GC   + DS ++     ++GYE   + D ADL+V+NTC   ++
Sbjct: 6   KSSGKPLAAPKVGMVSLGCPKALVDSEQIITQLRAEGYEISGTYDGADLVVVNTCGFIDE 65

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEE----ILRRSPIVNVVVGPQ 131
           A ++    +G                 V+V GC+   +       I    P V  V GP 
Sbjct: 66  AVQESLDAIGEALAENGK---------VIVTGCLGAKKSASGSGLIAEVHPKVLAVTGPH 116

Query: 132 TYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCT 191
               + + +                 D F  L    G     R   A+L I EGC+  C+
Sbjct: 117 AVGEVMQAVHSHLP---------KPHDPFVDLVPAAGIKLTPRHY-AYLKISEGCNHRCS 166

Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE-- 243
           FC++P  RG  +SR +++V+ EA  L  +GV E+ ++ Q+ +A+      R    +G   
Sbjct: 167 FCIIPSMRGELVSRPVAEVMLEAENLFKSGVKELLVISQDTSAYGVDVKYRTGFWNGRPL 226

Query: 244 KCTFSDLLYSLSEI----KGLVRLRYTTSHPRDMSDCLIKAHGDLD-VLMPYLHLPVQSG 298
           K   ++L+ +L E+       VRL Y   +P       + A G L   ++PYL +P Q  
Sbjct: 227 KTRMTELVGALGELAAQYGAWVRLHYVYPYPHVDEIIPMMAQGPLKGHVLPYLDVPFQHA 286

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
              +LK M R   A    + + + R + PD+ I S FI GFPGETD  F   +D + +  
Sbjct: 287 HPEVLKRMKRLANAERVLERVQKWREICPDLTIRSTFIAGFPGETDAQFETLLDFIREAE 346

Query: 359 YAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI 418
             +   F YSP  G   + +   + ++V+  R     +   E   +     +G+ ++VLI
Sbjct: 347 LDRVGCFAYSPVEGASANALDGALPDDVREARRARFMEVAEEVSAARIARKIGKTLKVLI 406

Query: 419 EKHGKEKGKLVGRS----PWLQSVVLN------SKNHNIGDIIKVRITDVKISTLYGEL 467
           ++   E G  +GR+    P +  VV        SK + +G+ + V+IT      L+GE+
Sbjct: 407 DEVNAEGG--IGRTAADAPEIDGVVYVEPAAKASKRYKVGEFVSVKITGADGHDLWGEV 463


>gi|255693887|ref|ZP_05417562.1| 2-methylthioadenine synthetase [Bacteroides finegoldii DSM 17565]
 gi|260620292|gb|EEX43163.1| 2-methylthioadenine synthetase [Bacteroides finegoldii DSM 17565]
          Length = 434

 Score =  356 bits (915), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 110/457 (24%), Positives = 207/457 (45%), Gaps = 35/457 (7%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEK 79
           +  +R  + + GC  N+ DS ++       GY   +  +    ++ V+NTC     A E+
Sbjct: 1   MKKRRIDIITLGCSKNLVDSEQLIRQLEEVGYSVTHDTENPQGEIAVINTCGFIGDAKEE 60

Query: 80  VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL 139
             + +      K      G    + V GC+++   +E+    P V+   G   +  L + 
Sbjct: 61  SINMILEFAERKEE----GDLKKLFVMGCLSERYLKELAIEIPQVDKFYGKFNWKELLQD 116

Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           L +           Y  E   ER       Y       A+L I EGCD+ C++C +P   
Sbjct: 117 LGQT----------YHDELYIERTLTTPRHY-------AYLKISEGCDRKCSYCAIPIIT 159

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G  IS+ + +++DE R L+  GV E  ++ Q +  + G  L  +K    +L+  +S+I G
Sbjct: 160 GRHISKPIDEILDEVRYLVSQGVKEFQVIAQELT-YYGVDLY-KKQMLPELIERISDIPG 217

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           +  +R   ++P      L +   + D +  Y+ + +Q  SD++L+ M R+ T  +  ++I
Sbjct: 218 VEWIRLHYAYPAHFPTDLFRVMRERDNVCKYMDIALQHISDKMLRLMRRQVTKEDTYKLI 277

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN-M 378
           ++ R   P I + +  +VG PGET++DF    + V K+ + +  +F YS   GT  +   
Sbjct: 278 EQFRKEVPGIHLRTTLMVGHPGETEEDFEELKEFVRKVRFDRMGAFAYSEEEGTYAAEAY 337

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PW 434
            + + + VK  RL  L    +      + A +G+ ++++I++   E    +GR+    P 
Sbjct: 338 EDSIPQEVKQARLDELMDIQQGISAELSAAKIGKQMKIIIDRL--EGDYYIGRTEFDSPE 395

Query: 435 LQSVVL---NSKNHNIGDIIKVRITDVKISTLYGELV 468
           +   VL   + K   IG   +V + D     LY +++
Sbjct: 396 VDPEVLINSSEKELEIGQFYQVEVIDADDFDLYAKVI 432


>gi|255282411|ref|ZP_05346966.1| MiaB protein [Bryantella formatexigens DSM 14469]
 gi|255266995|gb|EET60200.1| MiaB protein [Bryantella formatexigens DSM 14469]
          Length = 454

 Score =  356 bits (915), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 129/459 (28%), Positives = 221/459 (48%), Gaps = 47/459 (10%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           +  ++    + GC++N Y++  M+ M  ++GYE V     AD+ V+NTC +   A  K  
Sbjct: 1   MKKKKVAFHNLGCKVNAYETEAMQQMLQARGYEIVPFDGPADVYVINTCTVTNIADRKSR 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             L R +       K     +VV AGC AQA GEE+   +  V++V+G      L ++LE
Sbjct: 61  QMLHRAK-------KMNPQAVVVAAGCYAQAAGEELAGDT-AVDIVIGNNRKKDLADILE 112

Query: 142 RARFGKR-------------------------------VVDTDYSVEDKFERLSIVDGGY 170
                +                                    D +   ++E LSI     
Sbjct: 113 EYEQERTGCRSCEQEQADGCGQEQECEQAGCREQERAACHLQDVAHAPEYETLSISR--- 169

Query: 171 NRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQ 230
                  A++ +Q+GC++FC++C++PY RG   SR L+ V+ E   L +NG  E+ L G 
Sbjct: 170 -TAEHTRAYIKVQDGCNQFCSYCIIPYARGRIRSRELADVLAEVSTLAENGYQEVVLTGI 228

Query: 231 NVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY 290
           +++++  +  DG       L+ ++ E++G+ R+R  +  PR +++   +   +L  + P+
Sbjct: 229 HLSSYGKEKDDG--IGLLQLIEAVHEVEGIRRIRLGSLEPRIITEEFAERLSELPKICPH 286

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
            HL +QSG D  LK MNR +T  EY +    +R    D A+++D IVGFPGET+++F  T
Sbjct: 287 FHLSLQSGCDATLKRMNRHYTTEEYYEKCVLLRRYFDDPALTTDVIVGFPGETEEEFAQT 346

Query: 351 MDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACV 410
              ++K+ + +   FKYS R GT  + M  QV E +K ER   LQ+  +     +     
Sbjct: 347 CAFLEKVKFYETHIFKYSRRKGTKAAAMENQVPEEIKNERSKVLQELNKRNMAQYEALFH 406

Query: 411 GQIIEVLIEKHGKEKGK--LVGRSPWLQSVVLNSKNHNI 447
           G+  EVL E+   + G+    G +     V + + + ++
Sbjct: 407 GRRAEVLFEEKTVKDGREYYSGHTREYILVTVPAGDCDL 445


>gi|255535760|ref|YP_003096131.1| MiaB family protein, possibly involved in tRNA or rRNA modification
           [Flavobacteriaceae bacterium 3519-10]
 gi|255341956|gb|ACU08069.1| MiaB family protein, possibly involved in tRNA or rRNA modification
           [Flavobacteriaceae bacterium 3519-10]
          Length = 454

 Score =  356 bits (915), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 126/434 (29%), Positives = 207/434 (47%), Gaps = 16/434 (3%)

Query: 20  QCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEK 79
           + + P+     + GC++N  ++  +       GY++V   D AD+ V+NTC + E A  +
Sbjct: 7   ETLQPKTAAYHTLGCKLNFSETSTIARQLTGAGYQKVGFDDKADVYVINTCSVTENADRE 66

Query: 80  VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL 139
               + R        +K   D LVV+ GC AQ + EEI      V++V+G +  + +   
Sbjct: 67  CKYHVKRA-------MKANPDGLVVILGCYAQLKPEEI-SAIEGVDLVLGAKEKFNILSY 118

Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           L      ++  +       + +      G Y+      AFL +Q+GCD  CT+C +P  R
Sbjct: 119 LGDL---QKTANHGLIHSCEIDETDFFIGSYSIGDRTRAFLKVQDGCDYKCTYCTIPLAR 175

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK---CTFSDLLYSLSE 256
           GI  S ++  VV  A ++   G+ EI L G N+    GKG  G K    TF DL+  L  
Sbjct: 176 GISRSDTIENVVQNAAEIAAKGIKEIVLTGVNIG-DYGKGEFGNKKHEHTFLDLISELDL 234

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           ++G+ R+R ++  P  + D  I+        +P+ H+P+QSGSD +LK M RR+    Y 
Sbjct: 235 VEGIERIRISSIEPNLLKDESIELVARSKRFVPHFHIPLQSGSDDLLKKMKRRYLTALYS 294

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
           + I++IRSV PD  I  D I+GFPGET++ F  T   +  +  +    F YS R  T  +
Sbjct: 295 ERINKIRSVVPDACIGVDVIIGFPGETEEKFLETYRFLSDLPISYLHVFTYSERENTEAA 354

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQ 436
            M   V    +  R   L+    +++++F  +  G+ + VL E   K  G + G +    
Sbjct: 355 AMDGAVPVPERKRRNKMLRILSEKKKMAFYQSQTGKTLPVLWEHENK-NGLMYGFTENYV 413

Query: 437 SVVLNSKNHNIGDI 450
            V       ++ +I
Sbjct: 414 RVHKTFDPSSVNEI 427


>gi|325290538|ref|YP_004266719.1| RNA modification enzyme, MiaB family [Syntrophobotulus glycolicus
           DSM 8271]
 gi|324965939|gb|ADY56718.1| RNA modification enzyme, MiaB family [Syntrophobotulus glycolicus
           DSM 8271]
          Length = 464

 Score =  356 bits (915), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 134/470 (28%), Positives = 235/470 (50%), Gaps = 38/470 (8%)

Query: 13  MVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHI 72
           M  + + +    ++ F+ + GC++N  +S  +  +F   GY+ V   ++ D+IV+NTC +
Sbjct: 2   MDDRNLSKISRKKKVFLATLGCKVNQSESEALAQLFADHGYDVVEDKENPDIIVINTCTV 61

Query: 73  REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT 132
               + K    + R+       IKE     + V GC +Q    E++     V++V+G + 
Sbjct: 62  TGTGSSKSRKLIRRM-------IKEHPQSFIAVMGCYSQLNP-EVVAALEGVDLVLGTKD 113

Query: 133 YYRLPELLERARFGKR------------VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFL 180
              + E LE++ FG                 T Y  + ++E + +V     ++    A +
Sbjct: 114 RLTILEHLEKSWFGHIGSIEAGGKRSALKAVTQYDDQPEYEEMPLV----KQESRGRAMI 169

Query: 181 TIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL 240
            IQ+GC++FC++C+VP  RG   SR   ++ +EAR L+  G  E+ L G ++    G+  
Sbjct: 170 KIQDGCNQFCSYCIVPLARGPSRSRPPEKIEEEARMLLRGGYKELVLTGIHIG-VYGRDW 228

Query: 241 DGEKCTFSD-------LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL-MPYLH 292
           +    T  D       LL  ++ + GL RLR  +  P+++S  L++       +  P+ H
Sbjct: 229 NRGGETGKDTGDELGCLLDRIAGLPGLARLRLGSIEPKEISSGLLQVIAKNQKVVCPHFH 288

Query: 293 LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352
           +P+QSGSD +LK M R +T  EY  ++DRIRS  P  AIS+D + GFPGET ++   +M+
Sbjct: 289 IPLQSGSDSVLKRMRRPYTTAEYWDLLDRIRSRFPQAAISADVMTGFPGETREEHTESME 348

Query: 353 LVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQ 412
            + K   A    F YS R GTP +++  Q+++  K  R   L +  +  + ++  + + +
Sbjct: 349 FIQKCRLADLHVFPYSRRPGTPAADLGGQIEKREKTVRAKELLELGKTSRENYVSSWIKE 408

Query: 413 IIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK----NHNIGDIIKVRITDV 458
            IEVL+EK     G   G +     V + ++    +  IGDII+VR+   
Sbjct: 409 EIEVLVEKIAA-TGNARGYTANYIEVEIPAELNFGDWKIGDIIRVRLEKS 457


>gi|208780420|ref|ZP_03247761.1| conserved hypothetical protein [Francisella novicida FTG]
 gi|208743788|gb|EDZ90091.1| conserved hypothetical protein [Francisella novicida FTG]
          Length = 445

 Score =  356 bits (915), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 127/460 (27%), Positives = 204/460 (44%), Gaps = 40/460 (8%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           +P+  FV S GC  N+ DS R+     ++GY+ V+S D+AD++++NTC     A ++   
Sbjct: 10  IPKIGFV-SLGCPKNLVDSERIITKLKAEGYDLVDSYDNADMVIVNTCGFLNSAIDESLE 68

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +G              +  V+V GC+     + I  + P V  + GPQ Y     L+E 
Sbjct: 69  VIGEA---------IAENGKVLVTGCLGNK-ADLIKEKHPEVLSITGPQDYEN---LIEA 115

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
                 +   D+          +   G        ++L I EGC+  CTFC++P  RG  
Sbjct: 116 VHTHAPIFANDFVS-------LVPPQGIKLTPRHYSYLKISEGCNNTCTFCIIPDIRGKL 168

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-----RGKGLDGEK---CTFSDLLYSL 254
            SRS+  ++ EA KL + GV E+ ++ Q+ +A+        G+   K       DL  +L
Sbjct: 169 KSRSIDNIMKEAEKLKNAGVKELLVISQDTSAYGVDIKYKSGIWNNKEYQSNIIDLATAL 228

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
            ++    RL Y   +P       + A G    ++PYL +P+Q  S  +LK M R     +
Sbjct: 229 GDLDMWTRLHYVYPYPHVDKIVPLMAQG---KILPYLDVPLQHSSPEVLKRMKRPAHTQK 285

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
               I++ R + PDI I S FIVGFPGET+ DF   +D  +K    +   FKYS   G  
Sbjct: 286 TLDRINKWRDICPDITIRSTFIVGFPGETEADFEHLLDFAEKAQLDRVGCFKYSEVEGAK 345

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS-- 432
            +     + E VK +RL        +         VG   +V+I+   K++   +GR+  
Sbjct: 346 ANQFDNLISEEVKQQRLDEFMGLQAQISADKLQRFVGTEQQVIIDVINKDENYAIGRTKY 405

Query: 433 --PWLQSVVLNSK----NHNIGDIIKVRITDVKISTLYGE 466
             P +   V+       N  +G+   V IT+     L  +
Sbjct: 406 DAPEVDGQVIIGDALERNLKVGEFATVEITESTEYDLIAD 445


>gi|288573284|ref|ZP_06391641.1| MiaB-like tRNA modifying enzyme YliG [Dethiosulfovibrio
           peptidovorans DSM 11002]
 gi|288569025|gb|EFC90582.1| MiaB-like tRNA modifying enzyme YliG [Dethiosulfovibrio
           peptidovorans DSM 11002]
          Length = 431

 Score =  356 bits (915), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 116/452 (25%), Positives = 212/452 (46%), Gaps = 34/452 (7%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ ++ + GC  N  DS  +   F  + +  V+ +++ D+ ++NTC   + A E+    +
Sbjct: 2   KKIYILTLGCPKNSVDSEVLAGRFEPENWTLVDRVEECDIAIVNTCGFIQPAVEESIDVI 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL--ER 142
             +  +K      G    + V GC+    GE++ +  P V++    + +  L   L  + 
Sbjct: 62  LDLEEMKAQ----GTLEKICVVGCLVNRYGEDLKKEFPSVDLWAEAEDWDSLSRALGIDS 117

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            R G+R++                      +   T +L + EGCD  C+FC +P  RG  
Sbjct: 118 PRRGRRIL---------------------TESPWTRYLKVGEGCDTRCSFCTIPSIRGPL 156

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR    +V EA KL + G  E+ L+GQ++    G  L         L    +E+   + 
Sbjct: 157 RSREPKDIVAEAVKLAEEGAKELCLVGQDLT-VYGSDLSKRGSLSGLLDAMEAELPEDIW 215

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LR    HP  + +  ++   +   ++P+L +P+Q     +L+ MNR       R++    
Sbjct: 216 LRLFYLHPSRVDEASLERVLNSSRILPWLDIPIQHVDADVLRRMNRPPVEEHIRKLFKAG 275

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R + PD A  +  +VGFPGET+  F++ +D V+ + + +  +F + P  GTP + M +Q+
Sbjct: 276 RRMFPDFAFRTTIMVGFPGETEKAFQSLLDFVEDVAFDRLGAFTFCPEEGTPAALMPDQI 335

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSV 438
            ++ K  R   L +  +   ++     VG+ ++VLIE+  +E G   GRS    P +  +
Sbjct: 336 PQDEKDRRYAELMELQQGISLARQRGFVGKEMDVLIEEVDEEDGTRWGRSFRDAPEIDGL 395

Query: 439 VLN--SKNHNIGDIIKVRITDVKISTLYGELV 468
           V    +K+   GD+++V ITD     L+GE V
Sbjct: 396 VSISGAKDDVPGDMVRVSITDASEYDLFGERV 427


>gi|154248395|ref|YP_001419353.1| MiaB-like tRNA modifying enzyme YliG [Xanthobacter autotrophicus
           Py2]
 gi|238055317|sp|A7INV0|RIMO_XANP2 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|154162480|gb|ABS69696.1| MiaB-like tRNA modifying enzyme YliG [Xanthobacter autotrophicus
           Py2]
          Length = 449

 Score =  356 bits (915), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 128/461 (27%), Positives = 198/461 (42%), Gaps = 35/461 (7%)

Query: 20  QCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEK 79
                 R    S GC   + DS R+     ++GYE   +   ADL+V+NTC   + A  +
Sbjct: 10  PSKAAPRISFVSLGCPKALVDSERIVTRLRAEGYELTKTHQGADLVVVNTCGFLDSAKAE 69

Query: 80  VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL 139
             + +G                 VVV GC+  AE E+I    P V  + GPQ Y  +   
Sbjct: 70  SLNAIGEALAENGK---------VVVTGCMG-AEPEQIREVHPSVLAITGPQQYESVLAA 119

Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           +  A              D F  L   +G     R   A+L I EGC   CTFC++P  R
Sbjct: 120 VHEA---------VPPAHDPFLDLVPAEGVKLTPRHY-AYLKISEGCSNRCTFCIIPKLR 169

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-----RGKGLDGEK---CTFSDLL 251
           G  +SR    V+ EA +L+  GV E+ ++ Q+ +A+           G+K     F DL 
Sbjct: 170 GDLVSRPAGDVLREAERLVKAGVKELLVISQDTSAYGVDLRYATSPWGDKEVAARFLDLA 229

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
            +L ++   VRL Y   +P   +   + A G    ++PYL +P Q  S  +LK M R  +
Sbjct: 230 GALGDLGAWVRLHYVYPYPHVDAVMELMAAG---KVLPYLDIPFQHASPTVLKRMKRPAS 286

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
             +    I   R+  PD+ + S FIVGFPGET+ +F   +  +++    +A  FK+ P  
Sbjct: 287 QEKTLARIQAWRAAVPDLTLRSTFIVGFPGETEAEFEELLGFLEEAEIDRAGCFKFEPVR 346

Query: 372 GTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLV 429
           G   + +   V + VKAER     +  ++         VG    V+I+    +   G+  
Sbjct: 347 GADANALENPVPDAVKAERYDRFMRTQQKVSARRLKRKVGTRQSVIIDTVTPDGGIGRTK 406

Query: 430 GRSPWLQSV--VLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           G +P +     V   +   +G+I  V+I       L G  V
Sbjct: 407 GDAPEIDGTVKVFARRPLRVGEIATVKIEAAGPYDLSGTAV 447


>gi|322807272|emb|CBZ04846.1| miab family protein, possibly involved in tRNA or rRNAmodification
           [Clostridium botulinum H04402 065]
          Length = 432

 Score =  356 bits (915), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 132/444 (29%), Positives = 231/444 (52%), Gaps = 16/444 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    + GC++NVY++  M + F  QGYE V+  + AD+ V+NTC +     +K    + 
Sbjct: 2   KVAFSTLGCRVNVYETEAMTEKFIKQGYEIVDFNEVADVYVINTCTVTNMGDKKSRQMIS 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R R       ++    ++ V GC +Q   EE+  +   V+VV+G +    +   + RA  
Sbjct: 62  RGR-------RQNSKAIIAVVGCYSQIAPEEV-SKIDGVDVVLGTRNKGDIVYWVNRAME 113

Query: 146 GKRVVDTDYSV--EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            K  V     V    +FE L+I +     +    AFL IQ+GC++FC++C++P+ RG   
Sbjct: 114 EKNQVIEVKDVLRNKEFEELNIEEY----RDKTRAFLKIQDGCNRFCSYCLIPFARGAVC 169

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           S+   ++++E +KL  +G  EI L G ++ A  G  L+G K   + +L  + +++G+ R+
Sbjct: 170 SKKPEKIMEEVKKLSKHGFKEIILSGIDI-ASYGFDLEG-KYNLTSILEEIDKVEGIERI 227

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R  +  P   ++  I     L    P+ HL +QSG +  LK MNR++T  +Y++I+  +R
Sbjct: 228 RIGSIDPTFFTEEEIIRISKLKRFCPHFHLSLQSGCNETLKRMNRKYTVEQYKEIVHNLR 287

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           +    ++I++D IVGFP ET+++F  T + +  I  ++   FK+SPR GT    M  QVD
Sbjct: 288 TNIESVSITTDIIVGFPRETEEEFNKTYEFLRDIKLSKMHVFKFSPRKGTRAEEMKNQVD 347

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
             +K ER   +    ++ +  F +  + + + VL E+  KEKG   G +P    +   S 
Sbjct: 348 GKIKEERSNKIINLDKDLEKEFMNKFIEKEMPVLYEQETKEKGIFEGYTPNYIKIYSKSS 407

Query: 444 NHNIGDIIKVRITDVKISTLYGEL 467
               G+II   + +V    + GE+
Sbjct: 408 KDITGEIINTTLKEVSKDFIKGEI 431


>gi|153806285|ref|ZP_01958953.1| hypothetical protein BACCAC_00541 [Bacteroides caccae ATCC 43185]
 gi|149130962|gb|EDM22168.1| hypothetical protein BACCAC_00541 [Bacteroides caccae ATCC 43185]
          Length = 436

 Score =  356 bits (915), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 112/454 (24%), Positives = 202/454 (44%), Gaps = 35/454 (7%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEKVYS 82
           +R  + + GC  N+ DS ++       GY   +  +    ++ V+NTC     A E+  +
Sbjct: 4   KRIDIITLGCSKNLVDSEQLMRQLEEVGYSVTHDTETPQGEIAVINTCGFIGDAKEESIN 63

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +      K      G    + V GC+++    E+    P V+   G   +    ELL  
Sbjct: 64  MILEFAKRKEE----GDLKKLFVMGCLSERYLRELAIEIPQVDKFYGKFNW---KELLHD 116

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
                  +   Y  E   ER       Y       A+L I EGCD+ C++C +P   G  
Sbjct: 117 -------LGKSYHEELYIERTLTTPQHY-------AYLKISEGCDRKCSYCAIPIITGRH 162

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           IS+ + +++DE R L+  GV E  ++ Q +  + G  L  +K    +L+  +SEI G+  
Sbjct: 163 ISKPIEEILDEVRYLVSQGVKEFQVIAQELT-YYGVDLY-KKQMLPELIERISEIPGVEW 220

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R   ++P      L +   +   +  Y+ + +Q  SD +LK M R+ T  +  ++I++ 
Sbjct: 221 IRLHYAYPAHFPIDLFRVMRERGNVCKYMDIALQHISDNMLKLMRRQVTKEDTYRLIEQF 280

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN-MLEQ 381
           R   P I + +  +VG PGET++DF    + V K+ + +  +F YS   GT  +    + 
Sbjct: 281 RKEVPGIHLRTTLMVGHPGETEEDFEELKEFVRKVRFDRMGAFAYSEEEGTYAAETYEDS 340

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQS 437
           + + VK  RL  L    +      +   VG+ ++++I++   E    +GR+    P +  
Sbjct: 341 IPQKVKQARLDELMDIQQGISAELSAEKVGKQMKIIIDRL--EGDYYIGRTEFDSPEVDP 398

Query: 438 VVL---NSKNHNIGDIIKVRITDVKISTLYGELV 468
            VL   + K   IG   +V + D     LY +++
Sbjct: 399 EVLINCSEKELEIGKFYQVEVVDADDFDLYAKII 432


>gi|323345505|ref|ZP_08085728.1| MiaB tRNA modifying enzyme-like protein [Prevotella oralis ATCC
           33269]
 gi|323093619|gb|EFZ36197.1| MiaB tRNA modifying enzyme-like protein [Prevotella oralis ATCC
           33269]
          Length = 432

 Score =  356 bits (915), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 121/450 (26%), Positives = 212/450 (47%), Gaps = 35/450 (7%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEKVYSFLGR 86
           + + GC  N+ DS  +   F   GY  V+       ++ V+NTC   E A E+  + +  
Sbjct: 8   IITMGCSKNLVDSELLMKQFEVNGYHCVHDSKNPQGEIAVVNTCGFIESAKEESINTILE 67

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           +   K+     G    + V GC++Q   EE+ +  P V+   G   Y +L   L +A   
Sbjct: 68  LVAAKSE----GRLKKLYVMGCLSQRYKEELEKEIPEVDKFYGKFNYKQLLSDLGKA--- 120

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
                         E ++     +       A+L I EGCD+ C +C +P   G  +SR 
Sbjct: 121 --------------EIIACGGKRHLTTPRHYAYLKIAEGCDRHCAYCAIPLITGKHVSRP 166

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
            ++++ E  +L+ NGV E  ++ Q +  + G  +DG++   +DL+ ++++IKG+  +R  
Sbjct: 167 KAEILQEVEELVANGVKEFQIIAQELT-YYGVDIDGKR-HIADLISAIADIKGVKWIRLH 224

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
            ++P      L+    +   +  YL + +Q  SD IL  M+R  +  E   +I  IR+  
Sbjct: 225 YAYPNQFPMELLDVMKEKSNVCKYLDIALQHISDHILTRMHRHVSKQETIDLIKAIRTKV 284

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQVDEN 385
           PDI I +  +VGFPGET++DF    + V    + +  +F YS   GT  + N  + V E+
Sbjct: 285 PDIYIRTTLLVGFPGETEEDFEELKEFVKWARFERMGAFAYSEEEGTYSALNYKDDVPED 344

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVL- 440
           VK +RL  L +  ++      D  +G  ++V+I++  KE    V R+    P +   VL 
Sbjct: 345 VKQQRLDELMQIQQDISTEIEDEKIGCKMKVIIDR--KEGNYYVARTEFSSPEVDPEVLI 402

Query: 441 --NSKNHNIGDIIKVRITDVKISTLYGELV 468
               K  ++G    V+IT  +   +Y E++
Sbjct: 403 PAKGKMLHVGSFYNVQITGAEEFDMYAEVI 432


>gi|254372338|ref|ZP_04987829.1| hypothetical protein FTCG_01405 [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|151570067|gb|EDN35721.1| hypothetical protein FTCG_01405 [Francisella novicida GA99-3549]
          Length = 439

 Score =  356 bits (915), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 127/460 (27%), Positives = 204/460 (44%), Gaps = 40/460 (8%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           +P+  FV S GC  N+ DS R+     ++GY+ V+S D+AD++++NTC     A ++   
Sbjct: 4   IPKIGFV-SLGCPKNLVDSERIITKLKAEGYDLVDSYDNADMVIVNTCGFLNSAIDESLE 62

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +G              +  V+V GC+     + I  + P V  + GPQ Y     L+E 
Sbjct: 63  VIGEA---------IAENGKVLVTGCLGNK-ADLIKEKHPEVLSITGPQDYEN---LIEA 109

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
                 +   D+          +   G        ++L I EGC+  CTFC++P  RG  
Sbjct: 110 VHTHAPIFANDFVS-------LVPPQGIKLTPRHYSYLKISEGCNNTCTFCIIPDIRGKL 162

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-----RGKGLDGEK---CTFSDLLYSL 254
            SRS+  ++ EA KL + GV E+ ++ Q+ +A+        G+   K       DL  +L
Sbjct: 163 KSRSIDNIMKEAEKLKNAGVKELLVISQDTSAYGVDIKYKSGIWNNKEYQSNIIDLATAL 222

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
            ++    RL Y   +P       + A G    ++PYL +P+Q  S  +LK M R     +
Sbjct: 223 GDLDMWTRLHYVYPYPHVDKIVPLMAQG---KILPYLDVPLQHSSPEVLKRMKRPAHTQK 279

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
               I++ R + PDI I S FIVGFPGET+ DF   +D  +K    +   FKYS   G  
Sbjct: 280 TLDRINKWRDICPDITIRSTFIVGFPGETEADFEHLLDFAEKAQLDRVGCFKYSEVEGAK 339

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS-- 432
            +     + E VK +RL        +         VG   +V+I+   K++   +GR+  
Sbjct: 340 ANQFDNLISEEVKQQRLDEFMGLQAQISADKLQRFVGTEQQVIIDVINKDENYAIGRTKY 399

Query: 433 --PWLQSVVLNSK----NHNIGDIIKVRITDVKISTLYGE 466
             P +   V+       N  +G+   V IT+     L  +
Sbjct: 400 DAPEVDGQVIIGDALERNLKVGEFATVEITESTEYDLIAD 439


>gi|328675517|gb|AEB28192.1| Ribosomal protein S12p Asp88 methylthiotransferase [Francisella cf.
           novicida 3523]
          Length = 439

 Score =  356 bits (915), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 127/461 (27%), Positives = 205/461 (44%), Gaps = 42/461 (9%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           +P+  FV S GC  N+ DS R+     ++GY+ V+S D+AD++++NTC     A ++   
Sbjct: 4   IPKIGFV-SLGCPKNLVDSERIITKLKAEGYDLVDSYDNADMVIVNTCGFLNSAIDESLE 62

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +G              +  V+V GC+     + I  + P V  + GPQ Y     L+E 
Sbjct: 63  VIGEA---------IAENGKVLVTGCLGNK-ADLIKEKHPEVLSITGPQDYEN---LIEA 109

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
                 +   D+          +   G        ++L I EGC+  CTFC++P  RG  
Sbjct: 110 VHTHAPIFANDFVS-------LVPPQGIKLTPRHYSYLKISEGCNNTCTFCIIPDIRGKL 162

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK---------CTFSDLLYS 253
            SRS+  ++ EA KL + GV E+ ++ Q+ +A  G  +  +              DL  +
Sbjct: 163 KSRSIDNIMKEAEKLKNAGVKELLVISQDTSA-YGVDIKYKPGVWNNKEYQSNIIDLATA 221

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
           L ++    RL Y   +P       + A G    ++PYL +P+Q  S  +LK M R     
Sbjct: 222 LGDLDMWTRLHYVYPYPHVDKIVPLMAQG---KILPYLDVPLQHSSPEVLKRMKRPAHTQ 278

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
           +    I++ R + PDI I S FIVGFPGET++DF   +D  +K    +   FKYS   G 
Sbjct: 279 KTLDRINKWRDICPDITIRSTFIVGFPGETEEDFEHLLDFAEKAQLDRVGCFKYSEVEGA 338

Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS- 432
             +     + E VK +RL        +         VG   +++I+   KE+   +GR+ 
Sbjct: 339 KANQFDNLISEEVKQQRLDEFMGLQAQISADKLQRFVGTEQQIIIDVINKEENYAIGRTK 398

Query: 433 ---PWLQSVVLNSK----NHNIGDIIKVRITDVKISTLYGE 466
              P +   V+       N  +G+  KV IT+     L  +
Sbjct: 399 YDAPEVDGQVIIGDALERNLKVGEFAKVEITESTEYDLIAD 439


>gi|254563231|ref|YP_003070326.1| AdoMet-dependent methyltransferase, UPF0004 family
           [Methylobacterium extorquens DM4]
 gi|254270509|emb|CAX26512.1| putative AdoMet-dependent methyltransferase, UPF0004 family
           [Methylobacterium extorquens DM4]
          Length = 448

 Score =  356 bits (914), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 134/467 (28%), Positives = 204/467 (43%), Gaps = 35/467 (7%)

Query: 14  VSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIR 73
            S    +     R    S GC   + DS R+     ++GYE     D AD++++NTC   
Sbjct: 5   ASPSDTKGAAAPRISFVSLGCPKALVDSERILTHLRAEGYELSRRHDGADVVIVNTCGFL 64

Query: 74  EKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTY 133
           + A  +  + +G              +  V+V GC+  A+ EEI  + P +  V GPQ Y
Sbjct: 65  DSAKAESLAAIGEA---------MAENGRVIVTGCMG-AQPEEIREKYPNLLAVTGPQAY 114

Query: 134 YRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC 193
             +   +  A              D F  L I   G        A+L I EGC+  CTFC
Sbjct: 115 ESVVAAVHEA---------VPPAHDPFLDL-IPPQGVKLTPRHYAYLKISEGCNNRCTFC 164

Query: 194 VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE--------KC 245
           ++P  RG  +SR    V+ EA KL+  GV E+ ++ Q+ +A+                + 
Sbjct: 165 IIPSLRGDLVSRPAGDVLREAEKLVKAGVKELLVVSQDTSAYGIDTRYASSPWQDREVRA 224

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
            F DL   L E+   VRL Y   +P       + A G    ++PYL +P+Q  S  +LK 
Sbjct: 225 RFYDLAKELGELGAWVRLHYVYPYPHVDEVIPLMAEG---KILPYLDMPLQHASPSVLKR 281

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           M R     +    I R R + PD+AI S FIVGFPGETD +F   +D + +    +   F
Sbjct: 282 MRRPGNQEKQLDRIRRWREICPDLAIRSTFIVGFPGETDAEFEELLDWIREARLERVGCF 341

Query: 366 KYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK 425
           +Y P  G   +++   V   VKAER     +      +    A VG+ + V+I++ G   
Sbjct: 342 EYEPVKGATANDLGLLVPPEVKAERKRRFMEAQSHVSLRLQRAKVGKRLSVIIDEAGPTG 401

Query: 426 --GKLVGRSPWLQS-VVLNS-KNHNIGDIIKVRITDVKISTLYGELV 468
             G+    +P +   V + S +    GDI+ V+I       L+G  V
Sbjct: 402 ARGRSKADAPEIDGSVHVTSRRPVRPGDIVTVKIERADAYDLHGIAV 448


>gi|260424643|ref|ZP_05778954.1| RNA modification enzyme, MiaB family [Dialister invisus DSM 15470]
 gi|260402668|gb|EEW96215.1| RNA modification enzyme, MiaB family [Dialister invisus DSM 15470]
          Length = 433

 Score =  356 bits (914), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 116/437 (26%), Positives = 209/437 (47%), Gaps = 21/437 (4%)

Query: 44  MEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLV 103
           M  +    GYE    +  A +I++NTC   + A E+    + +    K    KEG    +
Sbjct: 2   MVGILAKAGYELTEDLSTAQIIIINTCTFIDPAKEESIQTILQAARYK----KEGVCERL 57

Query: 104 VVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA--RFGKRVVDTDYSVEDKFE 161
           V AGC+ Q   E + +  P +++ +G  ++  + E+++ +     K++   D +  +  E
Sbjct: 58  VAAGCLTQQYKEALGKEIPEIDIFIGTDSWQHILEVVQESYIHGNKKIYRFDTAPCEHEE 117

Query: 162 RLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNG 221
            +             +A++ I EGC   CTFC +PY RG   SRS+  VV E ++L   G
Sbjct: 118 LIPRQPL----TPPYSAYIKIAEGCSNGCTFCYIPYVRGAMRSRSIPSVVHEVKRLSSEG 173

Query: 222 VCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAH 281
           V E  L+ Q+ +++ G+ L+ +  T + LL  L +I  +  +R    +P    D L++  
Sbjct: 174 VREFNLIAQD-SSFYGRDLN-DGTTLARLLKELVKIDNVKWIRLFYLYPTYFDDELLEII 231

Query: 282 GDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPG 341
              + +  Y+ +P+Q  SD +L+ M+RR ++   ++++ ++R+  P I I +  +VGFPG
Sbjct: 232 TKEEKICKYVDIPLQHISDSVLRRMHRRDSSQSIKKLLKKLRNTTPYITIRTTLMVGFPG 291

Query: 342 ETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQ 401
           ET+ DF+  +  +  + +    +F YS + GTP + M++QV E +K  R   L     E 
Sbjct: 292 ETEADFKELLTFIKAVKFDNMGAFTYSAQDGTPAARMVDQVTEEIKENRYHELMAAQAEI 351

Query: 402 QVSFNDACVGQIIEVLIEKHGKE-------KGKLVGRSPWLQSVVLNS--KNHNIGDIIK 452
               N   +G   EVL+E+   +       KG+   ++P +   V      +   GD +K
Sbjct: 352 SEENNRNLIGVDTEVLVEELLDDGCGNLQAKGRASFQAPEVDGNVYIDHPGDLRPGDFVK 411

Query: 453 VRITDVKISTLYGELVV 469
             I D     L  E + 
Sbjct: 412 AHIIDGYAYDLIAERIT 428


>gi|303257047|ref|ZP_07343061.1| putative Fe-S oxidoreductase family 1 [Burkholderiales bacterium
           1_1_47]
 gi|330999926|ref|ZP_08323624.1| ribosomal protein S12 methylthiotransferase RimO [Parasutterella
           excrementihominis YIT 11859]
 gi|302860538|gb|EFL83615.1| putative Fe-S oxidoreductase family 1 [Burkholderiales bacterium
           1_1_47]
 gi|329573333|gb|EGG54945.1| ribosomal protein S12 methylthiotransferase RimO [Parasutterella
           excrementihominis YIT 11859]
          Length = 446

 Score =  356 bits (914), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 127/463 (27%), Positives = 206/463 (44%), Gaps = 42/463 (9%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P R    S GC   + DS R+     ++GY   ++  D+DL+++NTC   + A ++    
Sbjct: 5   PPRVGFVSLGCPKALVDSERIVTELRAEGYLISSTYKDSDLVIVNTCGFIDAAVQESLEA 64

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEE---ILRRSPIVNVVVGPQTYYRLPELL 140
           +    +             V+V GC+     EE   +  R P +  V GP+    +  L+
Sbjct: 65  ISEALSENGK---------VIVTGCLGGKNTEEGNFVALRFPKLLGVTGPEQTEEVLRLV 115

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
                     D      + F  L    GG        A+L I EGC+  CTFC++P  RG
Sbjct: 116 H---------DNLPRPHEPFGDLVPA-GGVLLTPKHYAYLKIAEGCNHHCTFCIIPSLRG 165

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE---------KCTFSDLL 251
             +SR +  VV EA  L+ +GV E+ ++ Q+  A  G+ +  +         K     L 
Sbjct: 166 PLVSRPIGSVVREASNLVKSGVKELLVIAQDTAA-YGQDVKYKLDFIGGRAVKTNIKVLF 224

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
             L ++   VR  Y   +        + A G    ++PYL +P Q    RILK+M R  +
Sbjct: 225 EELGKLGVWVRPHYMYPYASVDEIVPLMAEG---KILPYLDVPFQHAHPRILKAMKRPGS 281

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
                + I+  R++ PDI I S FI GFPGET+++F+  +D + +    +   F YSP  
Sbjct: 282 -EYNMERINAWRAICPDITIRSTFITGFPGETEEEFQYLLDFLKEARLNRVGCFAYSPVE 340

Query: 372 GTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR 431
           G   +++   + E+V+ ER     +   E         VG+ I+VL+++   E G    R
Sbjct: 341 GAAANDLPGALPESVRVERRERFMEVQSEISKELLREKVGKTIKVLVDEAPDEDGIATAR 400

Query: 432 S----PWLQSVVL--NSKNHNIGDIIKVRITDVKISTLYGELV 468
           S    P +  +V   N+ N   GD + V++TD     L+ E+V
Sbjct: 401 STADAPDIDGLVFIENNPNVKPGDFVDVKVTDSSDYDLFAEVV 443


>gi|300853988|ref|YP_003778972.1| putative oxidoreductase [Clostridium ljungdahlii DSM 13528]
 gi|300434103|gb|ADK13870.1| predicted oxidoreductase [Clostridium ljungdahlii DSM 13528]
          Length = 463

 Score =  356 bits (914), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 133/447 (29%), Positives = 237/447 (53%), Gaps = 17/447 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++  + + GC++N Y++  M + F  +GY+ V+  D AD+ V+NTC +     +K    +
Sbjct: 26  KKVGMSTLGCRVNQYETEAMAEKFIQEGYDIVDFEDYADVYVVNTCTVTNMGDKKSRQMI 85

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA- 143
            R R       K+  + ++ V GC +Q   +++      V+VV+G +    +   + R  
Sbjct: 86  HRAR-------KKNSNAVIAVVGCYSQIASDKV-SEIEGVDVVLGTRNKGDVVYWVSRVS 137

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             GK++V  +  +++K      +D    R R   AFL IQ+GC++FC++C +P+ RG   
Sbjct: 138 YEGKKIVKVNEVLKNKTFEDLKIDEYQKRTR---AFLKIQDGCNRFCSYCAIPFARGAVC 194

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           S+S  ++++E  KL  N   EI L G ++ A  G  +DG+      +L  + ++KG+ R+
Sbjct: 195 SKSPDKIIEEVEKLSRNNFKEIILSGIHI-ASYGTDIDGD-WNLLRILQEIDKVKGIDRV 252

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R  +  P+  ++ +I+    L+ L P+ HL +QSG D  LK MNRR+T  EY +I+  IR
Sbjct: 253 RIGSIDPQFFTEGVIEKMSKLEKLCPHFHLSLQSGCDETLKRMNRRYTTSEYEKIVYEIR 312

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           +   + +I++D IVGFPGET+++F  T D +++I  ++   FKYS R GT  ++M  QVD
Sbjct: 313 NAIENASITTDIIVGFPGETEEEFNKTYDFLNRIALSKMHVFKYSRRSGTKAADMPGQVD 372

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLVGRSPWLQSVVLNS 442
              K ER   + +  ++ +  F +  +G  ++VL E+     G    G +P    V+   
Sbjct: 373 GKTKDERSSKVLELDKKLEKKFMNKFLGYNMDVLYEQEIDNDGTYFEGYTPNYIKVITKC 432

Query: 443 KNH--NIGDIIKVRITDVKISTLYGEL 467
           +      G I+  ++   K   + G+L
Sbjct: 433 EKALNLEGKILCTQLEGTKDGYIEGKL 459


>gi|167769111|ref|ZP_02441164.1| hypothetical protein ANACOL_00434 [Anaerotruncus colihominis DSM
           17241]
 gi|167668751|gb|EDS12881.1| hypothetical protein ANACOL_00434 [Anaerotruncus colihominis DSM
           17241]
          Length = 441

 Score =  356 bits (914), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 121/449 (26%), Positives = 206/449 (45%), Gaps = 19/449 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +  + S GC  N  D+ R+       GYE        D++++NTC   E A  +    + 
Sbjct: 4   KVGMVSLGCSKNQVDAERLLAQIEKGGYEICTDASQCDVVIINTCGFIEDAKRESIETIL 63

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
               LK      G    +VV GC+A+   E++    P  +VV+G      +   +ERA  
Sbjct: 64  EFAQLKTG----GALRALVVTGCLAERYREQVAAEIPEADVVLGIGCNADILGAIERALH 119

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G++ V          E LS+            A+L + EGCD  C++C +P  RG   SR
Sbjct: 120 GEKTVAFGEK-----EALSLEGERVLANEPYFAYLKVAEGCDNRCSYCAIPLIRGPFRSR 174

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            +  +V EA++L   GV E+ ++ Q+     G+ L G +    +LL  L  + G+  +R 
Sbjct: 175 PMENIVAEAQRLAACGVTELNVVAQDTT-RYGEDLYG-RLALPELLEKLCRLDGVRWVRM 232

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
              +P  ++D L+      + ++ Y+ +P+Q  + RIL  MNRR  A     ++++IR+ 
Sbjct: 233 LYCYPDRITDRLLDVMAREEKIVKYMDIPIQHVNGRILSLMNRRGDAGSLTALMEKIRAR 292

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P + + +  I GFP ET  +F    + V ++ + +   F YS    TP + M  Q+DE 
Sbjct: 293 VPGVVLRTTLITGFPTETQGEFEELCEFVQRVRFERLGCFAYSAEEDTPAALMDGQLDEE 352

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQ-SVVL 440
            K  R   + ++       FN + +G+ + V +E  G+E     GRS    P +   V  
Sbjct: 353 EKRRRAQIIMEQQYGVMEGFNRSQIGRRLTVAVE--GREGRLWYGRSYMDAPDIDSRVYF 410

Query: 441 NS-KNHNIGDIIKVRITDVKISTLYGELV 468
           +    ++ GD I+V I  V+   L G+ +
Sbjct: 411 SGHGPYSPGDYIEVEIDGVEGYDLKGKAL 439


>gi|320108291|ref|YP_004183881.1| MiaB-like tRNA modifying enzyme YliG [Terriglobus saanensis SP1PR4]
 gi|319926812|gb|ADV83887.1| MiaB-like tRNA modifying enzyme YliG [Terriglobus saanensis SP1PR4]
          Length = 560

 Score =  356 bits (914), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 122/505 (24%), Positives = 215/505 (42%), Gaps = 66/505 (13%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R    S GC  N+ DS  M  M    G E   +  DAD+IV+NTC   + A ++  + + 
Sbjct: 59  RVGFVSLGCPKNLVDSEVMMGMLHHAGAELTPAASDADVIVINTCSFIDSAKQESVNTIL 118

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG---------------- 129
            +   K +    G    ++VAGC+ +   +EI++  P V+ VVG                
Sbjct: 119 EMVQHKVAN--GGRAQKIIVAGCLVERYRDEIMKNIPEVDAVVGTGELDGILAAAGIHQP 176

Query: 130 ----PQTYYRLPELLERA----------RFGKRVVDTDYSVEDKFERLSIVDG------- 168
               P        L++RA             ++    + ++ ++  R S +D        
Sbjct: 177 KNDSPFNILSESSLIDRAPSAVHKHSQTEVNEQASRAEGNLREQQGRFSRMDWDGATAAL 236

Query: 169 ----------GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLI 218
                             +A++ I EGCD  C FC++P  RG   SR +  V+ EA  L+
Sbjct: 237 PSYLYDDETPRILTTPRASAYIKIAEGCDHPCGFCIIPQLRGKFRSRRIGSVLAEAASLL 296

Query: 219 DNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE-----IKGLVRLRYTTSHPRDM 273
             GV EITL+GQ+     G+ L G K   + LL +L+      I  +  LR+  ++P  +
Sbjct: 297 KQGVREITLIGQDTT-CYGEDL-GMKDGLATLLEALATMNVEGIGPIKWLRFLYAYPNKV 354

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
           +  L++     D +  YL +P+Q  +   LK M R  +   + ++I++ R++ P I I +
Sbjct: 355 TTKLLETIAAHDNISKYLDVPLQHAAAGTLKRMKRGGSGAIFLKMIEKARNIVPGIVIRT 414

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLC 393
            FIVGFPGET  +F      + +        F YS   G    ++ E+V +     R   
Sbjct: 415 SFIVGFPGETAAEFEELESFIQQARIDWLGVFTYSDEEGAAAFDLGEKVPKRTIEARRRR 474

Query: 394 LQKKLREQQVSFNDACVGQIIEVLIEKHGKE-----KGKLVGRSPWLQSVVL-----NSK 443
           + +  ++      +  +G+ +EVL+E   +E     +G+ +  +P +   VL     + +
Sbjct: 475 IMRTQQKISAKAREQWIGKQMEVLVEGVSEETDLLWEGRTMLHAPEIDGKVLINDFGDHE 534

Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468
               G   +  IT+     +   ++
Sbjct: 535 TLVPGSFYRCEITEAHDYDVVARIL 559


>gi|295133883|ref|YP_003584559.1| 2-methylthioadenine synthetase [Zunongwangia profunda SM-A87]
 gi|294981898|gb|ADF52363.1| possible 2-methylthioadenine synthetase [Zunongwangia profunda
           SM-A87]
          Length = 445

 Score =  356 bits (914), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 125/442 (28%), Positives = 213/442 (48%), Gaps = 17/442 (3%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           ++ ++    + GC++N  ++  +   F  +G+E+V   + AD+ V+NTC + E A +   
Sbjct: 1   MMDKKVAFYTLGCKLNFSETSTIARSFQEEGFEKVEFNEYADIYVINTCSVTENADK--- 57

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
               R + +     K   +  ++  GC AQ + EE+      V++V+G    +++ + L 
Sbjct: 58  ----RFKTIVKQAQKANEEAFIIGVGCYAQLKPEELAAVD-GVDLVLGATEKFKITDYLH 112

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
                    D       + +      G Y+      AFL +Q+GCD  CT+C +P  RGI
Sbjct: 113 DLSKN----DFGEVHSCEIQEADFYVGSYSIGDRTRAFLKVQDGCDYKCTYCTIPLARGI 168

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK---CTFSDLLYSLSEIK 258
             S  L  V+  A ++ + G+ EI L G N+    GKG  G K    TF DL+ +L E+K
Sbjct: 169 SRSDKLENVLKNAAEISEQGIKEIVLTGVNIG-DYGKGEFGNKKHEHTFLDLVKALDEVK 227

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           G+ RLR ++  P  + +  I    D    +P+ H+P+QSGS+ ILK M RR+    Y   
Sbjct: 228 GIERLRISSIEPNLLKNETIDFVSDSSTFVPHFHIPLQSGSNDILKLMRRRYLRELYVDR 287

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           + +I+ V P   I  D IVGFPGETD+ F  T   + ++  +    F YS R  TP + M
Sbjct: 288 VAQIKKVMPHACIGVDVIVGFPGETDEHFLETYTFLTELDISYLHVFTYSERDNTPAAEM 347

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSV 438
              V   V+ +R   L+    +++ +F ++ +G    VL E   KE G + G +     V
Sbjct: 348 DGVVSNKVRKKRSKMLRGLSAKKRRAFYESQLGTTHTVLFEGENKE-GYIHGFTENYVKV 406

Query: 439 VLNSKNHNIGDIIKVRITDVKI 460
                   +  + ++++T++  
Sbjct: 407 KAPWNPELVNTLHQIQLTEIDE 428


>gi|148263556|ref|YP_001230262.1| MiaB-like tRNA modifying enzyme [Geobacter uraniireducens Rf4]
 gi|146397056|gb|ABQ25689.1| MiaB-like tRNA modifying enzyme [Geobacter uraniireducens Rf4]
          Length = 444

 Score =  356 bits (914), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 127/450 (28%), Positives = 221/450 (49%), Gaps = 15/450 (3%)

Query: 20  QCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEK 79
           Q        + + GC++N ++S  M +     G++ +   D AD+ V+NTC +  +   +
Sbjct: 5   QETAMNTVAITTLGCKINQFESAAMSEALGKDGFQVIPFDDVADIYVINTCTVTSRTDAE 64

Query: 80  VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL 139
               + R         ++     +VV GC AQ   EE+    P VN+++G      +  L
Sbjct: 65  SRRLIRRA-------SRQNPSARIVVTGCYAQVAFEEL-SDMPGVNLILGNSEKKGIAAL 116

Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           L+    G++V+ +D S E       +     +      AFL +Q GCD FC++C+VPY R
Sbjct: 117 LKEIGDGRQVLVSDISREKDAGGAQL----ESFAEHTRAFLQVQNGCDAFCSYCIVPYAR 172

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G   S  L + +   R     G  E+ L G ++    G  L         L+ +  + + 
Sbjct: 173 GRSRSVPLDEALAGIRTFAAQGFKEVVLTGIHLGG-YGLDLTPPLTLLDILIAA-EKQQL 230

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           + R+R  +  P ++SD LI       ++ P+LH+P+QSG+D++L  MNR++ A  +R+++
Sbjct: 231 VERIRVGSVEPTEVSDALIAFLAGSKLVCPHLHIPLQSGNDQVLSRMNRKYAANLFREVV 290

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
           +++    PDI I +D I GFPGE+ ++F      ++ +  A    F +SPR GTP + M 
Sbjct: 291 EKLVCALPDICIGTDIITGFPGESAEEFEQGYRFLESLPVAYFHVFPFSPRTGTPAATMG 350

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV 439
           + V  +V  ER   L+K   E++ ++    +G+ + VLI ++ +E G L G S     V 
Sbjct: 351 DHVRSSVIKERAKALRKLSEEKKKAYYRTFLGKELPVLI-QNREENGMLKGLSRNYMPVF 409

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELVV 469
           +   +  I +  +VRIT V    + GE+V 
Sbjct: 410 VKGDDSLINNEQRVRITGVVREEVKGEVVA 439


>gi|219854162|ref|YP_002471284.1| hypothetical protein CKR_0819 [Clostridium kluyveri NBRC 12016]
 gi|219567886|dbj|BAH05870.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 463

 Score =  356 bits (914), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 130/448 (29%), Positives = 235/448 (52%), Gaps = 17/448 (3%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
            +R  + + GC++N Y++  M + F  + YE VN  + AD+ V+NTC +     +K    
Sbjct: 25  KKRVAMATLGCRVNQYETEAMAEKFIEKEYELVNFEEYADVYVINTCTVTNMGDKKSRQM 84

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           + R +       ++    ++ V GC +Q   +E+  +   V+VV+G +    +   + +A
Sbjct: 85  IHRAK-------RKNSSAVIAVVGCYSQIAPDEV-SKINGVDVVLGTKNKGDILHFVNKA 136

Query: 144 -RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            +  ++++   + +++K      +    NR R   AFL IQ+GC++FC++C++P+ RG  
Sbjct: 137 FKDEEKIIKVSHVLKNKTFEDLNISEYQNRTR---AFLKIQDGCNRFCSYCLIPFARGPV 193

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            S+   +++ E +KL  N   EI L G ++ A  G  + G       +L  + +IKG+ R
Sbjct: 194 CSKEPDKIIKEVKKLQVNNFKEIILSGIHI-ASYGVDISGS-WNLIKILEEIDKIKGIDR 251

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R  +  P+  ++ +I     L  L P+ HL +QSG D  L  MNR++T  EY +I+ ++
Sbjct: 252 VRIGSIDPKFFTEDIINRMASLTKLCPHFHLSLQSGCDSTLNRMNRKYTTTEYEKIVYKL 311

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R    D++I++D IVGFPGET+++F  T D ++KI  ++   FKYS R GT  ++M EQ+
Sbjct: 312 RDSIKDVSITTDIIVGFPGETEEEFYKTYDFLNKIELSKIHVFKYSRREGTKAADMKEQI 371

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSPWLQSVVLN 441
           D  +K ER   + K     +  F +  +G  ++VL E K   +K    G +P    V+  
Sbjct: 372 DGKIKDERSSKIIKLNERLENKFMNRFLGNNMDVLYEQKVSGDKIYYEGYTPNYIKVIAE 431

Query: 442 S--KNHNIGDIIKVRITDVKISTLYGEL 467
           S    +  G ++  ++  VK   + G +
Sbjct: 432 SAEGENLEGKVLNTKLESVKEGYILGRI 459


>gi|188994127|ref|YP_001928379.1| putative Fe-S oxidoreductase [Porphyromonas gingivalis ATCC 33277]
 gi|238066441|sp|B2RHD7|RIMO_PORG3 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|188593807|dbj|BAG32782.1| putative Fe-S oxidoreductase [Porphyromonas gingivalis ATCC 33277]
          Length = 434

 Score =  356 bits (914), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 119/454 (26%), Positives = 203/454 (44%), Gaps = 36/454 (7%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDD--ADLIVLNTCHIREKAAEKVYSF 83
           R  V + GC  N+ DS  +   F S GY   +       +++V+NTC     A E+  + 
Sbjct: 5   RVDVITLGCSKNLVDSEVLMRQFLSNGYTVHHDPASVCGEIVVVNTCGFIGDAQEESVNT 64

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +  +   K    K G    + V GC+++   E++ +  P V+   G   + +L   L ++
Sbjct: 65  ILEMVEAK----KAGRIGSLYVMGCLSERFREDLKKEIPEVDAYYGKFDWKQLISHLGKS 120

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            + +                   +          A+L I EGCD+ C++C +P   G   
Sbjct: 121 YYAEA-----------------ENRRKLTTPRHYAYLKISEGCDRSCSYCAIPIITGRHR 163

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR +  +V+E R L+ +G  E  L+ Q++  + G  L G     ++L   LS+IKG+  L
Sbjct: 164 SRPMEDLVEEVRMLVKHGTREFQLIAQDLT-FYGLDLYGA-NRLAELTARLSDIKGVEWL 221

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R   ++P      L+    +   +  YL + +Q  SD +L+ M RR T  E  ++I+RIR
Sbjct: 222 RLHYAYPAQFPLDLLPVMRERPNVCKYLDMALQHISDPMLRRMRRRITKAETYELIERIR 281

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP-GSNMLEQV 382
           +  P I + +  + G PGET+ DF   +  V  I + +  +F YS   GT    N  + +
Sbjct: 282 TEVPGIHLRTTLMTGHPGETERDFEELLQFVRDIRFERLGAFTYSHESGTYCDKNYQDDI 341

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSV 438
            E+VK ERL  L         + N+A +G  + V+I++   E G  VGR+    P +   
Sbjct: 342 PESVKQERLGELMAVQERISAAHNEAKIGSRLRVVIDRA--EDGFYVGRTEYDSPEVDPE 399

Query: 439 V----LNSKNHNIGDIIKVRITDVKISTLYGELV 468
           V    ++ +    G      +T  +   LY  +V
Sbjct: 400 VLIPFVSGQELKPGRFYMAEVTGAEPFDLYARIV 433


>gi|226950381|ref|YP_002805472.1| RNA modification enzyme, MiaB family [Clostridium botulinum A2 str.
           Kyoto]
 gi|226843573|gb|ACO86239.1| RNA modification enzyme, MiaB family [Clostridium botulinum A2 str.
           Kyoto]
          Length = 432

 Score =  356 bits (914), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 132/444 (29%), Positives = 231/444 (52%), Gaps = 16/444 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    + GC++NVY++  M + F +QGYE V+  + AD+ V+NTC +     +K    + 
Sbjct: 2   KVAFSTLGCRVNVYETEAMTEKFINQGYEIVDFNEVADVYVINTCTVTNMGDKKSRQMIS 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R R       ++    ++ V GC +Q   EE+  +   V+VV+G +    +   + RA  
Sbjct: 62  RGR-------RQNSKAIIAVVGCYSQIAPEEV-SKIDGVDVVLGTRNKGDIVYWVNRAME 113

Query: 146 GKRVVDTDYSV--EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            K  V     V    +FE L+I +     +    AFL IQ+GC++FC++C++P+ RG   
Sbjct: 114 EKNQVIEVKDVLRNKEFEELNIEEY----RDKTRAFLKIQDGCNRFCSYCLIPFARGAVC 169

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           S+   ++++E  KL  +G  EI L G ++ A  G  L+G K   + +L  + +++G+ R+
Sbjct: 170 SKKPEKIMEEVEKLSKHGFKEIILSGIDI-ASYGFDLEG-KYNLTSILEEIDKVEGIERI 227

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R  +  P   ++  I     L    P+ HL +QSG +  LK MNR++T  +Y++I+  +R
Sbjct: 228 RIGSIDPTFFTEEEIIRISKLKRFCPHFHLSLQSGCNETLKRMNRKYTVEQYKEIVHNLR 287

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           +    ++I++D IVGFP ET+++F  T + +  I  ++   FK+SPR GT    M  QVD
Sbjct: 288 TNIESVSITTDIIVGFPEETEEEFNKTYEFLRDIKLSKMHVFKFSPRKGTRAEEMKNQVD 347

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
             +K ER   +    ++ +  F +  + + + VL E+  KEKG   G +P    +   S 
Sbjct: 348 GKIKEERSNKIINLDKDLEKEFMNKFIEKEMPVLYEQETKEKGIFEGYTPNYIKIYSKSS 407

Query: 444 NHNIGDIIKVRITDVKISTLYGEL 467
               G+II   + +V    + GE+
Sbjct: 408 KDITGEIINTTLKEVSKDFIKGEI 431


>gi|319943645|ref|ZP_08017926.1| RNA modification enzyme [Lautropia mirabilis ATCC 51599]
 gi|319742878|gb|EFV95284.1| RNA modification enzyme [Lautropia mirabilis ATCC 51599]
          Length = 497

 Score =  356 bits (914), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 129/474 (27%), Positives = 207/474 (43%), Gaps = 55/474 (11%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
               S GC   + DS R+     ++GY+  N  + ADL+V+NTC   ++A  +    +G 
Sbjct: 42  VGFVSLGCPKALVDSERIVTQLRAEGYQISNQYEGADLVVVNTCGFIDEAVAESLDAIGE 101

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEE------ILRRSPIVNVVVGPQTYYRLPELL 140
                        +  V+V GC+    G+       +    P V  V GP     +   +
Sbjct: 102 A---------LHENGKVIVTGCLGARTGQGGKDSNLVREIHPSVLAVTGPHALEEVMANV 152

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
            +               D F  L    GG        A+L I EGC+  C+FC++P  RG
Sbjct: 153 HQHLP---------KPHDPFSDLVPA-GGIKLTPRHYAYLKISEGCNHRCSFCIIPSLRG 202

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLY 252
              SR + +V+ EA  L+  GV E+ ++ Q+ +A+      R   +DG   K    +L  
Sbjct: 203 DLDSRPIGEVMREAENLLKAGVKELLVISQDTSAYGVDLRYRTDFVDGRPVKTRLFELCR 262

Query: 253 SLSEI----KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
            L ++       VRL Y   +P       + A G   +++PYL +P+Q    RILK M R
Sbjct: 263 ELGQLARQYGAWVRLHYVYPYPAVDDVLPLMAEG---LILPYLDVPLQHAHPRILKLMKR 319

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
             +     + I   R V P++ I S FI GFPGET+++F+  +D +++    +   F YS
Sbjct: 320 PASGERNIERIQAWRKVCPELTIRSTFIAGFPGETEEEFQYLLDFLEEAQLDRVGCFAYS 379

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE--KHGKEKG 426
           P  G   +++ + + + V+ ER   L +       +     VGQ +EVL++  +H  E+G
Sbjct: 380 PVEGAAANDLPDPLPDEVREERAARLMEVQEGISEARMARKVGQTLEVLVDAIEHDPEEG 439

Query: 427 --KLVGRS----PWLQS-VVLNSKNHN------IGDIIKVRITDVKISTLYGEL 467
             +LVGRS    P +   V +             G  ++  ITD     L GEL
Sbjct: 440 WWRLVGRSQADAPEIDGQVYVELDEAPADGTMGPGTFVRAHITDYDAHDLVGEL 493


>gi|332652498|ref|ZP_08418243.1| 2-methylthioadenine synthetase [Ruminococcaceae bacterium D16]
 gi|332517644|gb|EGJ47247.1| 2-methylthioadenine synthetase [Ruminococcaceae bacterium D16]
          Length = 430

 Score =  356 bits (914), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 127/444 (28%), Positives = 223/444 (50%), Gaps = 16/444 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R    + GC++N Y++  +E +   +G+  V    +AD  V+NTC +   + +K    + 
Sbjct: 2   RIAFYTLGCKVNQYETQALEQLVTQRGHTLVPFDGEADAYVINTCSVTAVSDKKSRQVIR 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R R       K   D ++ V GC +Q   +++ +    V++V G        +LLE+   
Sbjct: 62  RAR-------KTAPDAILAVCGCYSQTHPDDMDKL--EVDLVAGTGDRTGFVDLLEQTWQ 112

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRG-VTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
             + +     ++D F+R +  +       G   A L I++GC  FC++C++PY RG   S
Sbjct: 113 KHQSITV---LDDPFQRRTFENLPAGGLEGRTRAMLKIEDGCVNFCSYCIIPYARGRIRS 169

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
             L+    +A+ L++ G  EI L G  +++W G+ L+G+      +      +   +R+R
Sbjct: 170 LPLADCAAQAKSLVEAGYQEIVLTGIEISSW-GQDLEGKPSLIDAVEAICQAVPSHIRVR 228

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
             +  PR +++   +    L+ L P+ HL +QSG D +L  MNR++ +  Y + +  +  
Sbjct: 229 LGSLEPRTITEDFCRRCAALENLCPHFHLSMQSGCDTVLARMNRKYDSSRYYESVQFLHE 288

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           V    AI++D IVGFPGET+D+F+ T+D + K G+A    F YS R GTP + M  QV  
Sbjct: 289 VYDRPAITTDLIVGFPGETEDEFQQTLDFIQKCGFAAMHIFPYSRRPGTPAAKMPGQVPN 348

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
            +K +R     +  +  + ++ D+ VGQ + VL E+  +  G  +G +     V + S  
Sbjct: 349 AIKEDRAHRAAEIAQNMEYAYLDSFVGQTVPVLFEE--ERDGVWLGHTTHYCQVGVTSTE 406

Query: 445 HNIGDIIKVRITDVKISTLYGELV 468
                + +VR+T  + S L GELV
Sbjct: 407 SLHNQLRQVRLTGREGSQLIGELV 430


>gi|114320655|ref|YP_742338.1| MiaB-like tRNA modifying enzyme YliG [Alkalilimnicola ehrlichii
           MLHE-1]
 gi|122311674|sp|Q0A8I9|RIMO_ALHEH RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|114227049|gb|ABI56848.1| SSU ribosomal protein S12P methylthiotransferase [Alkalilimnicola
           ehrlichii MLHE-1]
          Length = 443

 Score =  356 bits (914), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 129/457 (28%), Positives = 200/457 (43%), Gaps = 38/457 (8%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R    S GC   + DS R+      +GYE V   ++AD++V+NTC   E A  +    +G
Sbjct: 11  RVGFVSLGCPKALVDSERILTQLRVEGYEIVGGYEEADVVVVNTCAFIEAAQAESLDAIG 70

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
              +             VVV GC+   +G+ I    P V  + GPQ Y  +   +     
Sbjct: 71  EALDENGK---------VVVTGCLG-TKGDLIRETHPGVLAITGPQDYEAVMAAVHA--- 117

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                       D F  L    G     R   A+L I EGC+  CTFC++P  RG  +SR
Sbjct: 118 -----QCPPPARDAFTGLLPASGVKLTPRHY-AYLKISEGCNHHCTFCIIPQLRGRLVSR 171

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD--------GEKCTFSDLLYSLSEI 257
            + QV+ EA +L+ +GV E+ ++ Q+ +A+                +   ++L  +L+E+
Sbjct: 172 PVDQVLAEAERLVGDGVRELLVISQDTSAYGVDTRYAAAEWRGVPRRTRMTELADALAEL 231

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
              VRL Y   +P       + A G    + PYL +P+Q  S RILK+M R        +
Sbjct: 232 GVWVRLHYVYPYPHVDELIPLMAEG---RIAPYLDMPLQHASPRILKAMRRPAGGEAVLE 288

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
            I R R   PD+ + S FIVGFPGET+DDF+  ++ ++     +   F YSP  G   + 
Sbjct: 289 RIRRWRQRCPDLTLRSTFIVGFPGETEDDFQVLLEFLEAAELDRVGCFTYSPVEGAAANA 348

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----P 433
           + + V E +  +R   L     E         VG    VL++    +    VGRS    P
Sbjct: 349 LADPVPEAIAEQRQARLMALQAEISARRLARRVGTECTVLLDAV--DGDAAVGRSQLEAP 406

Query: 434 WLQSVVL--NSKNHNIGDIIKVRITDVKISTLYGELV 468
            +  V+    ++    G  +  R+ D     LYG ++
Sbjct: 407 EVDGVIHLRGAEGCAPGQWVPARLEDADEHDLYGRVL 443


>gi|229588740|ref|YP_002870859.1| ribosomal protein S12 methylthiotransferase [Pseudomonas
           fluorescens SBW25]
 gi|229360606|emb|CAY47463.1| conserved hypothetical protein [Pseudomonas fluorescens SBW25]
          Length = 446

 Score =  356 bits (914), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 127/454 (27%), Positives = 214/454 (47%), Gaps = 34/454 (7%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC   + DS R+      +GY+ V++  DAD++V+NTC   + A  +    +G
Sbjct: 11  KVGFVSLGCPKALVDSERILTQLRMEGYDVVSTYQDADVVVVNTCGFIDSAKAESLEVIG 70

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                    IKE G   V+V GC+   EG  I    P V  V GPQ Y ++   +     
Sbjct: 71  EA-------IKENG--KVIVTGCMGVEEGA-IRNVHPSVLAVTGPQQYEQVVNAVHDVVP 120

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            ++  +    +        +   G        A+L I EGC+  C+FC++P  RG  +SR
Sbjct: 121 PRQDHNPLIDL--------VPPQGIKLTPRHYAYLKISEGCNHSCSFCIIPSMRGKLVSR 172

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYSLSEI 257
            +  V+DEA++L+ +GV E+ ++ Q+ +A+      R    +G   K   ++L  +LS +
Sbjct: 173 PVGDVLDEAQRLVKSGVKELLVISQDTSAYGVDVKYRTGFWNGAPVKTRMTELCEALSSL 232

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
              VRL Y   +P       + A G    ++PYL +P Q  S ++LK+M R     +   
Sbjct: 233 GVWVRLHYVYPYPHVDELIPLMAAG---KILPYLDIPFQHASPKVLKAMKRPAFEDKTLA 289

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
            I   R + P++ I S FIVGFPGET++DF+  +D + +    +   F+YSP  G P + 
Sbjct: 290 RIKNWREICPELIIRSTFIVGFPGETEEDFQYLLDWLTEAQLDRVGCFQYSPVEGAPANL 349

Query: 378 M-LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPW 434
           + L  V ++VK +R        +    +     +G+ IEVLI++  ++   G+    +P 
Sbjct: 350 LDLAVVPDDVKQDRWERFMAHQQAISSARLQLRIGKEIEVLIDEVDEQGAVGRCFFDAPE 409

Query: 435 LQSVVL--NSKNHNIGDIIKVRITDVKISTLYGE 466
           +   V   ++     GD +   +TD     L+ E
Sbjct: 410 IDGNVFIDDASGLKPGDKVWCTVTDADEYDLWAE 443


>gi|319790598|ref|YP_004152231.1| MiaB-like tRNA modifying enzyme YliG [Thermovibrio ammonificans
           HB-1]
 gi|317115100|gb|ADU97590.1| MiaB-like tRNA modifying enzyme YliG [Thermovibrio ammonificans
           HB-1]
          Length = 431

 Score =  356 bits (914), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 125/453 (27%), Positives = 217/453 (47%), Gaps = 29/453 (6%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQG-YERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++  V S GC  N  D+  M  +  + G  E V+S++ AD+I++NTC     A E+  
Sbjct: 1   MKKKIAVISLGCPKNWVDTELMVGLLKATGEVELVSSLEAADVILVNTCGFITPAKEESI 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             +      K    K+  D  VVVAGC+ Q   EE+ R  P V+  +G     R    +E
Sbjct: 61  DEILNAIEAK----KQSPDKKVVVAGCLYQRYKEELKRELPEVDAFIGVNELLRS---VE 113

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           R    K  V   Y   +                   A+L I EGC   CT+C +P  RG 
Sbjct: 114 RILNRKAAVRKPYLYREVL------------TPPHLAYLKIAEGCSNACTYCAIPIIRGP 161

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
             SR +++VV+EA++L + GV E+ ++ Q+  A+R     GE+     LL  L +++G+ 
Sbjct: 162 LKSRPVNEVVEEAKRLAERGVKELYVIAQDTTAYRRDF--GEEKALIKLLEQLEKVEGIE 219

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
            +R   ++P  ++D LI      + L+ Y+ +P+Q  +D++L SM R++T     +++++
Sbjct: 220 WIRLMYTYPSHITDNLIDYMASSEKLVKYIDVPLQHINDKVLASMGRKYTRASAEKLLEK 279

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R   P IAI + FIVGFP E + +F      + +  +  A  FKYS   GT    + + 
Sbjct: 280 LRLRVPGIAIRTTFIVGFPTEGEAEFEELHTFIKEFKFDWAGFFKYSREEGTAAYRLGD- 338

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRS----PWLQ 436
           + E +K  RL  L++         + + VG+ ++++++    +  G +  RS      + 
Sbjct: 339 LPEELKDSRLNLLEETQFWIYEELHRSLVGKRLKLIVDSPSSDMPGFVEARSYRNAYEID 398

Query: 437 SVVLNSKNHNIGDIIKVRITD-VKISTLYGELV 468
            +V    NH  G I++ ++T       L  E +
Sbjct: 399 GIVYLKGNHTPGKIVEAKVTGLASNVDLTAEPL 431


>gi|295084184|emb|CBK65707.1| SSU ribosomal protein S12P methylthiotransferase [Bacteroides
           xylanisolvens XB1A]
          Length = 436

 Score =  356 bits (913), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 106/454 (23%), Positives = 203/454 (44%), Gaps = 35/454 (7%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEKVYS 82
           +R  + + GC  N+ DS ++       GY   +  +    ++ V+NTC     A E+  +
Sbjct: 4   KRIDIITLGCSKNLVDSEQLMRQLEEVGYSVTHDTENPQGEIAVINTCGFIGDAKEESIN 63

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +      K      G    + V GC+++   +E+    P V+   G   +  L + L +
Sbjct: 64  MILEFAERKEE----GDLKKLFVMGCLSERYLKELAVEIPQVDKFYGKFNWKELLQDLGK 119

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
                      Y  E   ER       Y       A+L I EGCD+ C++C +P   G  
Sbjct: 120 V----------YHDELYIERTLTTPQHY-------AYLKISEGCDRKCSYCAIPIITGRH 162

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           IS+ + +++DE R L+  GV E  ++ Q +  + G     +K    +L+  +S+I G+  
Sbjct: 163 ISKPMEEILDEVRYLVSQGVKEFQVIAQELT-YYGIDRY-KKQMLPELIERISDIPGVEW 220

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R   ++P      L +   + D +  Y+ + +Q  SD +L+ M R+ +  +  ++I++ 
Sbjct: 221 IRLHYAYPAHFPTDLFRVMRERDNVCKYMDIALQHISDNMLQLMRRQVSKEDTYRLIEQF 280

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN-MLEQ 381
           R   P I + +  +VG PGET++DF    + V K+ + +  +F YS   GT  +    + 
Sbjct: 281 RKEVPGIHLRTTLMVGHPGETEEDFEELKEFVRKVRFDRMGAFAYSEEEGTYAAEAYEDS 340

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQS 437
           + + VK  RL  L    +      +   +G+ ++++I++   E    +GR+    P +  
Sbjct: 341 IPQEVKQARLDELMDIQQGISAELSAEKIGKQMKIIIDRL--EGDYYIGRTEFDSPEVDP 398

Query: 438 VVLNS---KNHNIGDIIKVRITDVKISTLYGELV 468
            VL     +   IG   +V +T+     LY +++
Sbjct: 399 EVLVKRSERELKIGQFYQVEVTNADDFDLYAKII 432


>gi|302037249|ref|YP_003797571.1| putative tRNA modifying enzyme, MiaB-like [Candidatus Nitrospira
           defluvii]
 gi|300605313|emb|CBK41646.1| putative tRNA modifying enzyme, MiaB-like [Candidatus Nitrospira
           defluvii]
          Length = 447

 Score =  356 bits (913), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 127/449 (28%), Positives = 220/449 (48%), Gaps = 15/449 (3%)

Query: 21  CIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKV 80
             +P R  + + GC+++  ++  + D    +GY+ V    + DL+VLNTC + E A +  
Sbjct: 3   TSMP-RASLHTLGCRLSQSETSMLADTLARRGYQLVEFGKETDLLVLNTCSVTENAEKDC 61

Query: 81  YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140
              +          ++      V V GC AQ  G   L++ P ++++VG Q    LP+ L
Sbjct: 62  RYAVR-------KTLRHSPHAFVAVTGCYAQT-GATQLQKVPGIDLIVGTQFKMNLPDYL 113

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
                 ++  + +       +R   V  G        A L IQ+GCD  C+FC++P+ RG
Sbjct: 114 PAPAKLRKQPEPELRHSRTIDREDFVLPGTAYSDSTRALLKIQDGCDFMCSFCLIPFARG 173

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E SR+   V+ EAR+L  +G  E+ L G N+  +  +GL        +LL  L  +  +
Sbjct: 174 RERSRTAEDVLREARELAAHGYRELVLTGVNIGRYSYQGL-----GLVELLRELESVPDV 228

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R ++  P  +   L++       L  YLHLP+QSG + IL++MNRR+   EY ++++
Sbjct: 229 TRIRISSIEPTTVPAALLEHMAGSTKLCHYLHLPLQSGDNTILQAMNRRYAVREYEELVE 288

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           +  ++ PD+ + +D +VGFPGE +  F  T+  V+++ ++    F YS R GT  + + +
Sbjct: 289 QALALMPDLGLGTDLMVGFPGEDEQAFANTVMTVERLPFSYFHVFSYSSRPGTAAARLED 348

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440
           Q+   V  +R   L +  R + ++F    +G  + VL E+ G+  G   G +     V +
Sbjct: 349 QISPAVIRQRSKALSELSRTKALAFYQQQIGHTLPVLFEQ-GERDGFRTGTTANFTRVAV 407

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELVV 469
            +     G I +V IT +     YG  V 
Sbjct: 408 AADAVEAGSIHQVTITGIMDGLAYGRPVA 436


>gi|288957725|ref|YP_003448066.1| miaB-like tRNA modifying enzyme [Azospirillum sp. B510]
 gi|288910033|dbj|BAI71522.1| miaB-like tRNA modifying enzyme [Azospirillum sp. B510]
          Length = 423

 Score =  356 bits (913), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 136/440 (30%), Positives = 219/440 (49%), Gaps = 31/440 (7%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           + ++GC++N Y+S  M +   S G +        D++++NTC +  +A  +    + ++R
Sbjct: 15  IVTFGCRLNSYESEVMRNHARSAGLD--------DVVIVNTCAVTSEAERQARQTIRKLR 66

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
                  +E  D  +VV GC AQ + +      P V+ V+G Q     PE        K 
Sbjct: 67  -------RERPDARIVVTGCAAQIDPQRFAA-MPEVDQVLGNQEKL-QPESWGLPPAEKV 117

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           +V+   SV++    L  + G  +R R   AF+ +Q+GCD  CTFC++PY RG   S  + 
Sbjct: 118 LVNDIMSVKETAGHL--IGGFEDRAR---AFVQVQQGCDHRCTFCIIPYGRGPSRSVPIG 172

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
            +V++ + L+  G  E+ L G ++ +  G  L G       +   L+ +  L RLR ++ 
Sbjct: 173 GIVEQVQALVKAGYNEVVLSGVDITS-YGPDLPGSPSLGQMVRRLLALVPELPRLRLSSI 231

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
              +M D L +  G+   LMP+LHL +Q+G D +LK M RRH   +      R+RSVRPD
Sbjct: 232 DCIEMDDDLWRLIGNEPRLMPHLHLSLQAGDDMVLKRMKRRHGRADSIAFCQRVRSVRPD 291

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           +   +DFI GFP ET++ F+ T+ LV++ G      F YSPR GTP + M  QVD  V+ 
Sbjct: 292 VVFGADFIAGFPTETEEMFQNTLRLVEECGLTWLHVFPYSPRPGTPAARMP-QVDGAVRK 350

Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIG 448
           ER   L+      +     + VG+   VL+EK        +GR+    ++ L  +    G
Sbjct: 351 ERAARLRAVGEVAEARALASLVGRTATVLVEKED------LGRTEHFAAIRL-GRPFPPG 403

Query: 449 DIIKVRITDVKISTLYGELV 468
            ++   IT +K   L G  +
Sbjct: 404 ALVPAAITGIKDGVLTGTPL 423


>gi|240140720|ref|YP_002965200.1| putative AdoMet-dependent methyltransferase, UPF0004 family
           [Methylobacterium extorquens AM1]
 gi|240010697|gb|ACS41923.1| putative AdoMet-dependent methyltransferase, UPF0004 family
           [Methylobacterium extorquens AM1]
          Length = 448

 Score =  356 bits (913), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 134/467 (28%), Positives = 205/467 (43%), Gaps = 35/467 (7%)

Query: 14  VSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIR 73
            S    +     R    S GC   + DS R+     ++GYE     D AD++++NTC   
Sbjct: 5   ASPSDTKGAAAPRISFVSLGCPKALVDSERILTHLRAEGYELSRRHDGADVVIVNTCGFL 64

Query: 74  EKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTY 133
           + A  +  + +G              +  V+V GC+  A+ EEI  + P +  V GPQ Y
Sbjct: 65  DSAKAESLAAIGEA---------MAENGRVIVTGCMG-AQPEEIREKYPNLLAVTGPQAY 114

Query: 134 YRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC 193
             +   +  A              D F  L I   G        A+L I EGC+  CTFC
Sbjct: 115 ESVVAAVHEA---------VPPAHDPFLDL-IPPQGVKLTPRHYAYLKISEGCNNRCTFC 164

Query: 194 VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE--------KC 245
           ++P  RG  +SR    V+ EA KL+  GV E+ ++ Q+ +A+                + 
Sbjct: 165 IIPSLRGDLVSRPAGDVLREAEKLVKAGVKELLVVSQDTSAYGIDTRYASSPWQDREVRA 224

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
            F DL   L E+   VRL Y   +P       + A G    ++PYL +P+Q  S  +LK 
Sbjct: 225 RFYDLAKELGELGAWVRLHYVYPYPHVDEVIPLMAEG---KILPYLDMPLQHASPSVLKR 281

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           M R     +    I R R + PD+AI S FIVGFPGETD +F   +D + +    +   F
Sbjct: 282 MRRPGNQEKQLDRIRRWREICPDLAIRSTFIVGFPGETDAEFEELLDWIREARLERVGCF 341

Query: 366 KYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-- 423
           +Y P  G   +++   V   VKAER     +      +    A VG+ + V+I++ G   
Sbjct: 342 EYEPVKGATANDLGLLVPPEVKAERKRRFMEAQSHVSLRLQRAKVGKRLSVIIDEAGPTV 401

Query: 424 EKGKLVGRSPWLQS-VVLNS-KNHNIGDIIKVRITDVKISTLYGELV 468
            +G+    +P +   V + S +    GDI+ V+I       L+G  V
Sbjct: 402 ARGRSKADAPEIDGSVHVTSRRPVRPGDIVTVKIERADAYDLHGIAV 448


>gi|328676442|gb|AEB27312.1| Ribosomal protein S12p Asp88 methylthiotransferase [Francisella cf.
           novicida Fx1]
          Length = 435

 Score =  356 bits (913), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 125/457 (27%), Positives = 203/457 (44%), Gaps = 38/457 (8%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           +P+  FV S GC  N+ DS R+     ++GY+ V+S D+AD++++NTC     A ++   
Sbjct: 4   IPKIGFV-SLGCPKNLVDSERIITKLKAEGYDLVDSYDNADMVIVNTCGFLNSAIDESLD 62

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +G              +  V+V GC+     + I  + P V  + GPQ Y     L+E 
Sbjct: 63  VIGEA---------IAENGKVLVTGCLGNK-ADLIKEKHPEVLSITGPQDYEN---LIEA 109

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
                 +   D+          +   G        ++L I EGC+  CTFC++P  RG  
Sbjct: 110 VHTHAPIFANDFVS-------LVPPQGIKLTPRHYSYLKISEGCNNTCTFCIIPDIRGKL 162

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE-----KCTFSDLLYSLSEI 257
            SRS+  ++ EA KL   GV E+ ++ Q+ +A  G  +  +     +    DL  +L ++
Sbjct: 163 KSRSIDNIMKEAEKLKKAGVKELLVISQDTSA-YGVDIKYKSNKEYQSNIIDLATALGDL 221

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
               RL Y   +P       + A G    ++PYL +P+Q  S  +LK M R     +   
Sbjct: 222 DMWTRLHYVYPYPHVDKIVPLMAQG---KILPYLDVPLQHSSPEVLKRMKRPAHTQKTLD 278

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
            I++ R + PDI I S FIVGFPGET+ DF   +D  +K    +   FKYS   G   + 
Sbjct: 279 RINKWRDICPDITIRSTFIVGFPGETEADFEHLLDFAEKAQLDRVGCFKYSEVEGAKANQ 338

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----P 433
               + E +K +RL        +         VG   +V+I+   K++   +GR+    P
Sbjct: 339 FDNLISEEIKQQRLDEFMGLQAQISADKLQRFVGTEQQVIIDVINKDENYAIGRTKYDAP 398

Query: 434 WLQSVVLNSK----NHNIGDIIKVRITDVKISTLYGE 466
            +   V+       N  +G+   V IT+     L  +
Sbjct: 399 EVDGQVIIGDALERNLKVGEFATVEITESTEYDLIAD 435


>gi|256827179|ref|YP_003151138.1| MiaB-like tRNA modifying enzyme YliG [Cryptobacterium curtum DSM
           15641]
 gi|256583322|gb|ACU94456.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Cryptobacterium
           curtum DSM 15641]
          Length = 477

 Score =  356 bits (913), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 120/442 (27%), Positives = 207/442 (46%), Gaps = 19/442 (4%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           + + GC  N  DS +M       G+  +N    AD+I++NTC   + A E+    +  + 
Sbjct: 48  IITMGCAKNEVDSAKMRGQLQEGGWSVINDPTAADVIIVNTCSFIQAATEESLETIFEVA 107

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
           +LK  R    G   +VVAGC+    G+++       +  V       +  +++       
Sbjct: 108 DLKRVRS---GQAKIVVAGCMPARYGDDLSDSLTEASRFVPCSKEDDILSVVDEL----- 159

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
               D          S +    +     +A++ I +GCD+FC++C +P+ RG   S +  
Sbjct: 160 ---IDRPKSSYAPGASSIPVVASSDPLYSAYVKISDGCDRFCSYCTIPFIRGRYHSFTFE 216

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
            +  E  + ID+G  EI L+ Q+   W G+  D +  T + L+  L+E+      R    
Sbjct: 217 VIEAEVTRCIDSGAREIVLIAQDTGRW-GQDFD-QPSTLACLMARLAELHPDTWFRVMYL 274

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
            P  ++D L+ A    D +  YL +P Q   +R+L SMNRR +   Y+ +I+ +RS  P 
Sbjct: 275 QPEGVTDELLAAMASHDNICSYLDIPFQHADERLLTSMNRRGSRAGYQTLIEHVRSCVPG 334

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           I + +  I G+PGE D+DF   ++ +D+        F YS   GT  + + +QVDE +K 
Sbjct: 335 ITLRTTMIAGYPGERDEDFEEMLEFIDEADLDYVGVFAYSQEEGTRAARLSDQVDEAIKQ 394

Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVVLNSKN 444
           ER   L+              +G  ++VL+    +E G+L+GR    +P +  VV    +
Sbjct: 395 ERAQRLRDVADAHSQMRVAKRIGSTMDVLVLGC-EEDGRLIGRAQCQAPDVDGVVYL-DH 452

Query: 445 HNIGDIIKVRITDVKISTLYGE 466
             +G+I++V ITD  +  + GE
Sbjct: 453 GQVGEIVQVDITDTFLYEMEGE 474


>gi|255013882|ref|ZP_05286008.1| putative Fe-S oxidoreductase [Bacteroides sp. 2_1_7]
 gi|256839776|ref|ZP_05545285.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Parabacteroides sp. D13]
 gi|298375535|ref|ZP_06985492.1| 2-methylthioadenine synthetase [Bacteroides sp. 3_1_19]
 gi|301310445|ref|ZP_07216384.1| 2-methylthioadenine synthetase [Bacteroides sp. 20_3]
 gi|256738706|gb|EEU52031.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Parabacteroides sp. D13]
 gi|298268035|gb|EFI09691.1| 2-methylthioadenine synthetase [Bacteroides sp. 3_1_19]
 gi|300832019|gb|EFK62650.1| 2-methylthioadenine synthetase [Bacteroides sp. 20_3]
          Length = 432

 Score =  356 bits (913), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 111/456 (24%), Positives = 211/456 (46%), Gaps = 34/456 (7%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDD--ADLIVLNTCHIREKAAEK 79
           +   +  + + GC  N+ DS ++   F + GY   +       +++V+NTC     A E+
Sbjct: 1   MRKNKVDIITLGCSKNLVDSEQLMRQFVANGYTVEHDPHKINGEIVVVNTCGFIGDAQEE 60

Query: 80  VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL 139
             + +  +   K      G    + V GC+++   +++ +  P V+   G   +  L   
Sbjct: 61  SINMILELGEQKQK----GRIGKLFVMGCLSERFLKDLEKELPEVDRFYGKFNWKELISD 116

Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           L +           Y  E   ER+      Y       A++ I EGC++ C++C +P   
Sbjct: 117 LGK----------SYHQELATERVLTTPRHY-------AYVKIGEGCNRTCSYCSIPIIT 159

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G   SR + ++VDE R L+  GV E  ++ Q++  + G     ++    +L+  +S+I G
Sbjct: 160 GAYQSRPMDEIVDEVRGLVAQGVKEFQMIAQDLT-FYGLDRY-KRMALPELVERVSDIPG 217

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           +  +R    +P      L+    + D +  Y+ + +Q  SD +LK M R  T  E  +++
Sbjct: 218 VEWIRLHYGYPSHFPYDLLPVMRERDNVCKYMDIALQHISDPMLKMMRRNITKAETYELL 277

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NM 378
           +R+R   P I + +  +VG PGET+ DF   +  V  I + +  +F YS   GT    + 
Sbjct: 278 ERMRREVPGIHLRTTLMVGHPGETEQDFEELIRFVKDIRFERMGAFAYSHEEGTYAYQHY 337

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PW 434
            +++ + VK +RL  L +         N + VGQ   V++++  +E+   VGR+    P 
Sbjct: 338 KDEIPQEVKQDRLDYLMRVQEGISADVNASKVGQTFRVIVDR--EEEDFYVGRTQYDSPE 395

Query: 435 LQSVVLNSKN--HNIGDIIKVRITDVKISTLYGELV 468
           +   +L SK+   + G   +V++ D +   LYG+++
Sbjct: 396 VDPEILISKDTPLSPGSFYQVKVIDAQAFDLYGKVL 431


>gi|150007589|ref|YP_001302332.1| putative Fe-S oxidoreductase [Parabacteroides distasonis ATCC 8503]
 gi|238066427|sp|A6LAJ6|RIMO_PARD8 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|149936013|gb|ABR42710.1| putative Fe-S oxidoreductase [Parabacteroides distasonis ATCC 8503]
          Length = 432

 Score =  356 bits (913), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 107/456 (23%), Positives = 208/456 (45%), Gaps = 34/456 (7%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDD--ADLIVLNTCHIREKAAEK 79
           +   +  + + GC  N+ DS ++   F + GY   +       +++V+NTC     A E+
Sbjct: 1   MRKNKVDIITLGCSKNLVDSEQLMRQFVANGYTVEHDPHKINGEIVVVNTCGFIGDAQEE 60

Query: 80  VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL 139
             + +  +   K      G    + V GC+++   +++ +  P V+   G   +  L   
Sbjct: 61  SINMILELGEQKQK----GRIGKLFVMGCLSERFLKDLEKELPEVDRFYGKFNWKELISD 116

Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           L ++   +   D                          A++ I EGC++ C++C +P   
Sbjct: 117 LGKSYHQELATDRVL-----------------TTPRHYAYVKIGEGCNRTCSYCSIPIIT 159

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G   SR + ++VDE R L+  GV E  ++ Q++  + G     ++    +L+  +S+I G
Sbjct: 160 GAYQSRPMDEIVDEVRGLVAQGVKEFQMIAQDLT-FYGLDRY-KRMALPELVERVSDIPG 217

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           +  +R    +P      L+    + D +  Y+ + +Q  SD +LK M R  T  E  +++
Sbjct: 218 VEWIRLHYGYPSHFPYDLLPVMRERDNVCKYMDIALQHISDPMLKMMRRNITKAETYELL 277

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NM 378
           +R+R   P I + +  +VG PGET+ DF   +  V  I + +  +F YS   GT    + 
Sbjct: 278 ERMRREVPGIHLRTTLMVGHPGETEQDFEELIRFVKDIRFERMGAFAYSHEEGTYAYQHY 337

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PW 434
            +++ + VK +RL  L +         N + VGQ   V++++  +E+   VGR+    P 
Sbjct: 338 KDEIPQEVKQDRLDYLMRVQEGISADVNASKVGQTFRVIVDR--EEEDFYVGRTQYDSPE 395

Query: 435 LQSVVLNSKN--HNIGDIIKVRITDVKISTLYGELV 468
           +   +L SK+   + G   +V++ D +   LYG+++
Sbjct: 396 VDPEILISKDTPLSPGSFYQVKVIDAQAFDLYGKVL 431


>gi|187778464|ref|ZP_02994937.1| hypothetical protein CLOSPO_02058 [Clostridium sporogenes ATCC
           15579]
 gi|187772089|gb|EDU35891.1| hypothetical protein CLOSPO_02058 [Clostridium sporogenes ATCC
           15579]
          Length = 432

 Score =  356 bits (913), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 135/444 (30%), Positives = 232/444 (52%), Gaps = 16/444 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    + GC++NVY++  M + F  QGYE V+  + AD+ V+NTC +     +K    + 
Sbjct: 2   KVAFSTLGCRVNVYETEAMTEKFIKQGYEVVDFNEVADVYVINTCTVTNMGDKKSRQMIS 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R R       ++    ++ V GC +Q   EE+  +   V+VV+G +    +   + RA  
Sbjct: 62  RGR-------RQNSKAIIAVVGCYSQIAPEEVA-KIEGVDVVLGTRNKGDIVYWINRAME 113

Query: 146 GKRVVDTDYSV--EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            K  V     V    +FE L+I +     +    AFL IQ+GC++FC++C++P+ RG   
Sbjct: 114 EKNQVIEVKDVLRNKEFEELNIEEY----RDKTRAFLKIQDGCNRFCSYCLIPFARGAVC 169

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           S+   +V++E RKL  +G  EI L G ++ A  G  L+G K   + +L  + +++G+ R+
Sbjct: 170 SKKPEKVMEEVRKLSKHGFKEIILSGIDI-ASYGFDLEG-KYNLTSILEDIDKVEGIERI 227

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R  +  P   ++  I     L    P+ HL +QSG +  LK MNR++T  +Y++I+  +R
Sbjct: 228 RIGSIDPTFFTEEEIIRISKLKKFCPHFHLSLQSGCNETLKRMNRKYTVEQYKEIVYNLR 287

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           +    ++I++D IVGFPGET+++F  T + +  I  ++   FK+SPR  T    M  QVD
Sbjct: 288 TNIEAVSITTDIIVGFPGETEEEFNKTYEFLKDIKLSKMHVFKFSPRKATRAEKMENQVD 347

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
            N+K ER   +    +  +  F +  + + + VL E+  KEKG   G +P    +   S 
Sbjct: 348 GNIKEERSNKIINLDKALEKEFMNKFIEKEMLVLYEQETKEKGIFEGYTPNYIKIYAKSL 407

Query: 444 NHNIGDIIKVRITDVKISTLYGEL 467
               G+II  ++ +V    + GE+
Sbjct: 408 KDITGEIISTKLKEVSKDFIKGEI 431


>gi|89898289|ref|YP_515399.1| hypothetical protein CF0482 [Chlamydophila felis Fe/C-56]
 gi|123722311|sp|Q254N4|RIMO_CHLFF RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|89331661|dbj|BAE81254.1| conserved hypothetical protein [Chlamydophila felis Fe/C-56]
          Length = 460

 Score =  356 bits (913), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 121/457 (26%), Positives = 216/457 (47%), Gaps = 21/457 (4%)

Query: 20  QCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEK 79
           Q     +    S GC  N+ D+  M  +    GYE   S+++AD ++LNTC   + A ++
Sbjct: 11  QEASKNKIHFISLGCSRNLVDTEVMLGILLKSGYEATESLEEADYLILNTCAFLKAARDE 70

Query: 80  VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL 139
              +L RI   K    K      +++ GC+     EE+    P ++ V+G      +   
Sbjct: 71  STDYLQRIIKAKKETAK------IILTGCMVSKHKEELKPLLPHIHYVLGSGDVEHILSA 124

Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           +E   +G+++    Y    +  R       Y       A+L I EGC K C FC++P  +
Sbjct: 125 IESKEYGEKISSKSYLEMGEIPRKLSTPKHY-------AYLKIAEGCRKRCAFCIIPTIK 177

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G   S+ L Q++ E R L+  GV EI L+ Q++  +        K     +L  + +  G
Sbjct: 178 GALRSKPLDQIIKEFRLLLKMGVKEIILIAQDLGDYGKDFSADRKSCLDKVLKEMLKEPG 237

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
              +R    +P ++ D +I        L+PY+ +P+Q  ++R+LK M R  +  +   ++
Sbjct: 238 DYWIRMLYLYPDEVDDTIIDLMESDHRLLPYVDIPLQHINNRVLKKMLRTTSKEQILDLL 297

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            ++R+  P I I S FIVGFPGETDD+F+  +D V +        F YS   G+  ++M 
Sbjct: 298 TKLRTRIPHIYIRSSFIVGFPGETDDEFQDLVDFVREGWIDNLGIFSYSQEEGSVAADMP 357

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-----GKLVGRSPW 434
           +QV ++VK++RL  L +  ++     N   VGQ++E +I+ +  +       +  G++P 
Sbjct: 358 DQVSQSVKSKRLKILSQAQKQNVEKHNQKLVGQVVEAVIDGYHPDSELLLTARFYGQAPE 417

Query: 435 LQSVVLNSKNHNI---GDIIKVRITDVKISTLYGELV 468
           +   ++ ++   +   G+   + IT      L G +V
Sbjct: 418 VDPCIIVNEARLVSGFGERYLIEITGYVGYDLIGRVV 454


>gi|160947755|ref|ZP_02094922.1| hypothetical protein PEPMIC_01690 [Parvimonas micra ATCC 33270]
 gi|158446889|gb|EDP23884.1| hypothetical protein PEPMIC_01690 [Parvimonas micra ATCC 33270]
          Length = 443

 Score =  356 bits (913), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 135/428 (31%), Positives = 225/428 (52%), Gaps = 17/428 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    + GC++N Y++  M+++F  +GYE  N  D  D+ V+NTC +   +  K   F+ 
Sbjct: 10  KVSFLTLGCKVNQYETEAMQELFKKRGYEICNENDICDVYVINTCTVTNLSDRKSRQFIS 69

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R + L         D ++ V GC +Q   +EI      V+V++G +   R+ EL E ++ 
Sbjct: 70  RAKKL-------NKDAILAVVGCYSQVAPDEI-SAIEDVDVIIGTKNRARIVELCEESKK 121

Query: 146 GKRVVDT--DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
                +   + + +  F+ LSI     N++    A++ IQEGC+ FCT+C++PY RG   
Sbjct: 122 SNLKFNIVSELTKDCGFDVLSI----ENQESKTRAYIKIQEGCNMFCTYCIIPYARGPIK 177

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR +  + +EA KL +NG  E+ + G +V +  G  L G      D++  LS I+ L R+
Sbjct: 178 SRPIDDIYEEAVKLANNGYKEVIITGIHVGS-YGLDL-GNDTRLIDVIEKLSTIENLDRI 235

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R ++     +S+  +    +   +  + HL +QSG D+ILK MNRR+TA  YR+ +  I+
Sbjct: 236 RLSSIEAGIISEDFLIRLKNCKKVCEHFHLSLQSGCDKILKLMNRRYTADMYRKKVRMIK 295

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
            + P++A+++D IVGFPGE D+DF+ T++ V +IG+++   FKYS R GTP  +  EQVD
Sbjct: 296 EIFPNVALTTDIIVGFPGENDEDFQETLNFVKEIGFSKIHVFKYSKRKGTPAFDFKEQVD 355

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
            NVK  R   L    ++    F    + +  EVL E+      +LVG +           
Sbjct: 356 GNVKKFRSNELILLAKDMTTEFLKKELSEKHEVLFEE-NINGNRLVGYTRNYIRFSAPYN 414

Query: 444 NHNIGDII 451
                 ++
Sbjct: 415 EDMKNKVV 422


>gi|109947120|ref|YP_664348.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Helicobacter
           acinonychis str. Sheeba]
 gi|109714341|emb|CAJ99349.1| unnamed protein product [Helicobacter acinonychis str. Sheeba]
          Length = 427

 Score =  356 bits (913), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 144/439 (32%), Positives = 236/439 (53%), Gaps = 23/439 (5%)

Query: 36  MNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRI 95
           MN  DS  +        Y+  N    ADLI++NTC +REK   K++S +G+   +K    
Sbjct: 1   MNSRDSEHLLSELSKLDYKETNDPKIADLILINTCSVREKPERKLFSEIGQFAKIKK--- 57

Query: 96  KEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYS 155
               +  + V GC A   G +IL++SP V+ V+G +   ++ +++ + +  +  +D D S
Sbjct: 58  ---PNAKIGVCGCTASHMGADILKKSPSVSFVLGARNVSKISQVIHKEKAVEVAIDYDES 114

Query: 156 VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEAR 215
                   S     + +K  V + L I  GCDK CT+C+VP+TRG EIS  +  ++ EA 
Sbjct: 115 --------SYAFEFFEKKAEVRSLLNISIGCDKKCTYCIVPHTRGKEISIPMDLILKEAE 166

Query: 216 KLIDNGVCEITLLGQNVNAWRGKGL-DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMS 274
           KL +NG  E+ LLGQNVN +  +   +  K  FSDLL  LSEI G+ R+R+T+ HP  M+
Sbjct: 167 KLANNGTKELMLLGQNVNNYGVRFSSEHAKVNFSDLLDKLSEIPGIERIRFTSPHPLHMN 226

Query: 275 DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSD 334
           D  ++       +   +H+P+QSGS  +LK M R +    +   +++++++ P++ IS+D
Sbjct: 227 DEFLERFAKNPKVCKSIHMPLQSGSSAVLKMMRRGYNKEWFLNRVEKLKALVPEVGISTD 286

Query: 335 FIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCL 394
            IVGFP E+D DF  TM++++K+ +   +SF YSPR  T      E+V   V + RL  L
Sbjct: 287 IIVGFPNESDKDFEDTMEVLEKVCFDTLYSFIYSPRPFTEAGAWKERVPLEVSSLRLERL 346

Query: 395 QKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV---GRSPWLQSVVLN-SKNHNIGDI 450
           Q + +E         VG+   VL+E   +  G++V   GRS   + + +   +  N G++
Sbjct: 347 QNRHKEILEEKARLEVGKTHVVLVENRHEVDGQIVGFEGRSDTGKFIEVTCKEKRNPGEL 406

Query: 451 IKVRITDVKISTLYGELVV 469
           ++V I       + G L+ 
Sbjct: 407 VEVEIIS----HVKGRLMA 421


>gi|297621456|ref|YP_003709593.1| MiaB-like tRNA modifying enzyme [Waddlia chondrophila WSU 86-1044]
 gi|297376758|gb|ADI38588.1| MiaB-like tRNA modifying enzyme [Waddlia chondrophila WSU 86-1044]
          Length = 433

 Score =  355 bits (912), Expect = 7e-96,   Method: Composition-based stats.
 Identities = 119/445 (26%), Positives = 215/445 (48%), Gaps = 29/445 (6%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           Q+F V + GC+ N Y+S    D     GYE     +DADL ++NTC + E A  +    +
Sbjct: 13  QKFRVVTLGCRTNQYESQAFRDQLLQMGYEPAEGKEDADLCIVNTCTVTESADSRSRYEI 72

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            ++        K+     ++V GC  + + E+I     +  +V           LLE+  
Sbjct: 73  RQLA-------KKNPHAKIIVTGCSVERQPEKIEAIEGVAQLVKNADKEI----LLEKVF 121

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G+ + +      D                   AF+ +Q+GC+ FCT+C++PY RG   S
Sbjct: 122 PGEDLPEFSIRNFDA---------------HTRAFVKVQDGCNSFCTYCIIPYVRGRSRS 166

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R++ QV++E + LI NG  EI L G N+  +   G   E    ++L+  +  + GL RLR
Sbjct: 167 RTMGQVLEEVKDLIANGYKEIVLTGINIGDF--DGGADEPRRLAELVKEVDAVPGLERLR 224

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
            ++  P ++ D +++   +       +H+ +QSGS+ +LK MNR++T   +   + R+RS
Sbjct: 225 VSSIDPDEVDDEMLETIINGKKTCRSMHIVLQSGSNVVLKRMNRKYTRQMFMDTVSRLRS 284

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
              D   ++D IVGFPGET+ D + T++++ ++ +A+   F YSPR  T  +   ++V  
Sbjct: 285 ACSDFTFTTDVIVGFPGETERDHQETLEVLQEVQFAKVHMFPYSPRPRTRAALYSDRVSA 344

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GRSPWLQSVVLNSK 443
           +V   R   + +   E   +   + VG+ + VL E +     +++ G +     V++   
Sbjct: 345 DVIQRRKQEVLRLSEEIAFNLRSSYVGRRMSVLTENYDDLHTEMISGHTDNFLPVMVPKA 404

Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468
                 +I+V   +   + L G++V
Sbjct: 405 ALRPNTMIEVECRENTAAALIGKVV 429


>gi|285808603|gb|ADC36122.1| putative 2-methylthioadenine synthetase [uncultured bacterium 253]
          Length = 432

 Score =  355 bits (912), Expect = 7e-96,   Method: Composition-based stats.
 Identities = 115/435 (26%), Positives = 188/435 (43%), Gaps = 16/435 (3%)

Query: 44  MEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLV 103
           M     + GYE      +AD +V+NTC     A ++    +     LK +    G    +
Sbjct: 1   MMGQLKANGYELTADASEADTVVVNTCGFIASAKQESIEAILEAAQLKTN----GKAQRL 56

Query: 104 VVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERL 163
           VVAGC+ +   +E+    P V+  +G      +  +       + +       +      
Sbjct: 57  VVAGCLVERYRDELKASLPEVDAFIGTSQINDILAVCNPQTNTRSLPIIALGNQSATYLY 116

Query: 164 SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVC 223
                         AF+ I EGCD+ C FC +P  RG   SR    +V EA +L   GV 
Sbjct: 117 DESTPRVLATPAHYAFIKIAEGCDRPCAFCFIPQMRGHFRSRRFGSIVAEAHQLAXEGVK 176

Query: 224 EITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGD 283
           E+ L+ Q+ ++  G+ L G++   + LL  LS   G+  +R    +P  +SD  +    +
Sbjct: 177 ELILVAQD-SSRYGEDL-GKQDALAHLLRELSHTDGIEWVRVMYXYPTHISDAFLDVLAE 234

Query: 284 LDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGET 343
               + YL +P+Q  S  +LK M R        ++I R+R   P IA+ + FI GFPGET
Sbjct: 235 EAKAVKYLDMPLQHASQNVLKLMKRGGNRASLEKLIRRVRERVPGIAVRTTFITGFPGET 294

Query: 344 DDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQV 403
           D+DF   +  +  + + +   F YS   GTP   +  +V+  +  +R   L K       
Sbjct: 295 DEDFEELLTFIKNVEFDRVGVFTYSDEEGTPAFELANKVEPRIAKQRRARLMKAQSRISR 354

Query: 404 SFNDACVGQIIEVLIEKHGKEKGKLV-GR----SPWLQSVVLNSK-----NHNIGDIIKV 453
             N A VG+++ V+ E    E   L  GR    +P +   VL +        + G ++ V
Sbjct: 355 KRNKAKVGEVLRVIFEGDSNESDLLWQGRIETQAPDIDGCVLINDAPEGFTPSPGAMVNV 414

Query: 454 RITDVKISTLYGELV 468
            IT+ +   L G +V
Sbjct: 415 LITEAQEYDLVGRIV 429


>gi|330950628|gb|EGH50888.1| ribosomal protein S12 methylthiotransferase [Pseudomonas syringae
           Cit 7]
          Length = 440

 Score =  355 bits (912), Expect = 7e-96,   Method: Composition-based stats.
 Identities = 133/461 (28%), Positives = 213/461 (46%), Gaps = 37/461 (8%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
            PQ  FV S GC   + DS R+      +GYE V + +DAD++V+NTC   + A  +   
Sbjct: 2   APQIGFV-SLGCPKALVDSERILTQLRMEGYEVVATYEDADVVVVNTCGFIDTAKAESLE 60

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +G         IKE G   V+V GC+   +   I    P V  V GPQ Y ++   +  
Sbjct: 61  VIGEA-------IKENG--KVIVTGCMG-VDANVIRDVHPSVLSVTGPQQYEQVVNAVHD 110

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
               ++  +    +        +   G        A+L I EGC+  C+FC++P  RG  
Sbjct: 111 VVPPRQDHNPLIDL--------VPPQGVKLTPRHYAYLKISEGCNHSCSFCIIPSMRGKL 162

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYSL 254
           +SR +  V+DEA++L+ +GV E+ ++ Q+ +A+      R    DG+  K   ++L  +L
Sbjct: 163 VSRPVGDVLDEAKRLVKSGVKELLVISQDTSAYGVDVKYRTGFWDGQPVKTRMTELCQAL 222

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
             +   VRL Y   +P       + A G    ++PYL +P Q  S +ILK M R     +
Sbjct: 223 GSMGVWVRLHYVYPYPHVDELIPLMAAG---KILPYLDIPFQHASPKILKLMKRPAFEDK 279

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
               I   R   PD+ I S FIVGFPGET++DF+  +D + +    +   F+YSP  G P
Sbjct: 280 TLARIKNWREQCPDLIIRSTFIVGFPGETEEDFQYLLDWLTEAQLDRVGCFQYSPVEGAP 339

Query: 375 GSNMLEQ-VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGR 431
            + +    V ++VK +R        +    +     +G+ IEVLI++       G+    
Sbjct: 340 ANLLDAAIVPDDVKQDRWDRFMAHQQAISAARLQMKIGKEIEVLIDEVDDRGAVGRCFFD 399

Query: 432 SPWLQSVVL----NSKNHNIGDIIKVRITDVKISTLYGELV 468
           +P +   V     +      GD I  R+TD     L+ E++
Sbjct: 400 APEIDGNVFIGLEDGSTVQPGDKIMCRVTDADEYDLWAEML 440


>gi|330995100|ref|ZP_08319017.1| ribosomal protein S12 methylthiotransferase RimO [Paraprevotella
           xylaniphila YIT 11841]
 gi|329576676|gb|EGG58179.1| ribosomal protein S12 methylthiotransferase RimO [Paraprevotella
           xylaniphila YIT 11841]
          Length = 443

 Score =  355 bits (912), Expect = 8e-96,   Method: Composition-based stats.
 Identities = 112/452 (24%), Positives = 202/452 (44%), Gaps = 35/452 (7%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEKVY 81
                V + GC  N+ DS ++     + GY+  +  D    ++ V+NTC     A E+  
Sbjct: 13  KNTIDVITLGCSKNLVDSEKLMRQLEANGYKVTHDADRPQGEIAVINTCGFIGDAKEESI 72

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           + +      K      G    + V GC+++   +E+    P V+   G   +  L   L 
Sbjct: 73  NMILEFCQAKEE----GRLKKLFVMGCLSERYLKELGEEIPQVDKFYGKFDWNELLADLG 128

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           +A          Y  E   ER       Y       A+L I EGCD+ C++C +P   G 
Sbjct: 129 KA----------YHQELSLERELTTPSHY-------AYLKISEGCDRRCSYCAIPIITGK 171

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
            +SR +  +++E R L+  GV E  ++ Q +  + G  L   +    +L+  +++I G+ 
Sbjct: 172 HVSRPIEDILEEVRMLVSRGVKEFQVIAQELT-YYGLDLY-HRQVLPELIERMADIPGVE 229

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
            +R   ++P +    L +   +   +  Y+ + +Q  SD +L+ M+R  T  E   +I+R
Sbjct: 230 WIRLHYAYPANFPVDLFRVMREKKNVCKYMDIALQHISDNMLQRMHRHVTRKETYDLIER 289

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP-GSNMLE 380
            R   P I + +  +VG PGET++DF   +D V K+ + +  +F YS   GT    +  +
Sbjct: 290 FREEVPGIHLRTTLMVGHPGETEEDFNELLDFVRKVKFDRMGAFSYSEEEGTYSAEHYED 349

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQ 436
           ++   VK  RL  L    +E         +G++ +V+I++   E    +GR+    P + 
Sbjct: 350 EIPFEVKQARLDKLMALQQEVSADLATRKIGKVFKVIIDRS--EGEYYIGRTEFDSPEVD 407

Query: 437 S-VVLNSKNHNI--GDIIKVRITDVKISTLYG 465
             V++ +    +  G   +V+ITD     LYG
Sbjct: 408 PEVLIPACEGTLSFGAFYEVKITDADDFDLYG 439


>gi|163853309|ref|YP_001641352.1| MiaB-like tRNA modifying enzyme YliG [Methylobacterium extorquens
           PA1]
 gi|238066393|sp|A9W8D2|RIMO_METEP RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|163664914|gb|ABY32281.1| MiaB-like tRNA modifying enzyme YliG [Methylobacterium extorquens
           PA1]
          Length = 448

 Score =  355 bits (912), Expect = 8e-96,   Method: Composition-based stats.
 Identities = 134/467 (28%), Positives = 204/467 (43%), Gaps = 35/467 (7%)

Query: 14  VSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIR 73
            S    +     R    S GC   + DS R+     ++GYE     D AD++++NTC   
Sbjct: 5   ASPSDTKGAAAPRISFVSLGCPKALVDSERILTHLRAEGYELSRRHDGADVVIVNTCGFL 64

Query: 74  EKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTY 133
           + A  +  + +G              +  V+V GC+  A+ EEI  + P +  V GPQ Y
Sbjct: 65  DSAKAESLAAIGEA---------MAENGRVIVTGCMG-AQPEEIREKYPNLLAVTGPQAY 114

Query: 134 YRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC 193
             +   +  A              D F  L I   G        A+L I EGC+  CTFC
Sbjct: 115 ESVVAAVHEA---------VPPAHDPFLDL-IPPQGVKLTPRHYAYLKISEGCNNRCTFC 164

Query: 194 VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE--------KC 245
           ++P  RG  +SR    V+ EA KL+  GV E+ ++ Q+ +A+                + 
Sbjct: 165 IIPSLRGDLVSRPAGDVLREAEKLVKAGVKELLVVSQDTSAYGIDTRYASSPWQDREVRA 224

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
            F DL   L E+   VRL Y   +P       + A G    ++PYL +P+Q  S  +LK 
Sbjct: 225 RFYDLAKELGELGAWVRLHYVYPYPHVDEVIPLMAEG---KILPYLDMPLQHASPSVLKR 281

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           M R     +    I R R + PD+AI S FIVGFPGETD +F   +D + +    +   F
Sbjct: 282 MRRPGNQEKQLDRIRRWREICPDLAIRSTFIVGFPGETDAEFEELLDWIREARLERVGCF 341

Query: 366 KYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK 425
           +Y P  G   +++   V   VKAER     +      +    A VG+ + V+I++ G   
Sbjct: 342 EYEPVRGATANDLGLLVPPEVKAERKRRFMEAQSHVSLRLQRAKVGKRLSVIIDEAGPTG 401

Query: 426 --GKLVGRSPWLQS-VVLNS-KNHNIGDIIKVRITDVKISTLYGELV 468
             G+    +P +   V + S +    GDI+ V+I       L+G  V
Sbjct: 402 ARGRSKADAPEIDGSVHVTSRRPVRPGDIVTVKIERADAYDLHGIAV 448


>gi|288931237|ref|YP_003435297.1| MiaB-like tRNA modifying enzyme [Ferroglobus placidus DSM 10642]
 gi|288893485|gb|ADC65022.1| MiaB-like tRNA modifying enzyme [Ferroglobus placidus DSM 10642]
          Length = 422

 Score =  355 bits (911), Expect = 9e-96,   Method: Composition-based stats.
 Identities = 131/445 (29%), Positives = 226/445 (50%), Gaps = 29/445 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + ++++YGC MN  DS  M  +   + Y   +S ++AD++++NTC +      K+   + 
Sbjct: 2   KVYIETYGCTMNQADSDIMRGLLSRE-YAFADSAEEADVVIVNTCGVIGFTERKILRRIE 60

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            I+         G    V+ AGC+A+   + +     I + +V P   +R+ E ++    
Sbjct: 61  EIK---------GMGKKVIAAGCLARIARKRL----KIADALVSPDNVHRINEAVKAVLN 107

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G+RV   + S  DK E   I       K    A ++I EGC   C++C     RG   S 
Sbjct: 108 GERVEIINVSRVDKAE---ISGVKCRLKENAIAIVSISEGCLGNCSYCATKIARGRLRSF 164

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           S+ ++V+E +K+++ G  EI L  Q+  A  GK    +     DLL  +SEI+G  R+R 
Sbjct: 165 SIEKIVEEVKKVVEMGYKEIQLTSQDTGA-YGKD---KGYRLPDLLEKISEIEGDFRVRV 220

Query: 266 TTS---HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
                 H  ++ D LI+A    + +  +LHLPVQSG +++L  M R HT  ++ +++   
Sbjct: 221 GMMNPQHAMEILDDLIEAF-KSEKIYKFLHLPVQSGDNKVLMDMRRGHTVEDFEEVVSAF 279

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R    D+ +S+D IVGFP E+++ F  T++L+ ++        ++SPR GT  + + + +
Sbjct: 280 RKAFDDVLLSTDVIVGFPTESEESFEKTVELIKRVKPDIVNITRFSPREGTLAAKLKD-I 338

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
            + +K ER   L K   E  +  N   VG+ + VL+ K GK +  L+ R+   + VVL  
Sbjct: 339 PDWIKKERSRKLTKICEEIGLENNLKFVGKKLRVLVTKRGKNE-TLLARADSYRPVVL-- 395

Query: 443 KNHNIGDIIKVRITDVKISTLYGEL 467
           +   IG+  + ++ D K + L GEL
Sbjct: 396 EEGTIGEFYRAKVVDAKFNYLVGEL 420


>gi|28871162|ref|NP_793781.1| hypothetical protein PSPTO_4019 [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|81730041|sp|Q87Y01|RIMO_PSESM RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|28854412|gb|AAO57476.1| conserved hypothetical protein TIGR01125 [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 443

 Score =  355 bits (911), Expect = 9e-96,   Method: Composition-based stats.
 Identities = 130/458 (28%), Positives = 211/458 (46%), Gaps = 36/458 (7%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R  + S GC   + DS R+      +GYE V + +DAD++V+NTC   + A  +    +G
Sbjct: 7   RVGMISLGCPKALVDSERILTQLRMEGYEVVATYEDADVVVVNTCGFIDTAKAESLEVIG 66

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                    IKE G   V+V GC+   +   I    P V  V GPQ Y ++   +     
Sbjct: 67  EA-------IKENG--KVIVTGCMG-VDASVIRAVHPSVLSVTGPQQYEQVVNAVHDVVP 116

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            ++  +    +        +   G        A+L I EGC+  C+FC++P  RG  +SR
Sbjct: 117 PRKDHNPLIDL--------VPPQGVKLTPRHYAYLKISEGCNHSCSFCIIPSMRGKLVSR 168

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYSLSEI 257
            +  V+DEA++L+ +GV E+ ++ Q+ +A+      R    DG+  K   ++L  +L  +
Sbjct: 169 PVGDVLDEAKRLVKSGVKELLVISQDTSAYGVDVKYRTGFWDGQPVKTRMTELCQALGSM 228

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
              VRL Y   +P       + A G    ++PYL +P Q  S +ILK M R     +   
Sbjct: 229 GVWVRLHYVYPYPHVDELIPLMAAG---KILPYLDIPFQHASPKILKLMKRPAFEDKTLA 285

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
            I   R   PD+ I S FIVGFPGET++DF+  +D + +    +   F+YSP  G P + 
Sbjct: 286 RIKNWREQCPDLIIRSTFIVGFPGETEEDFQYLLDWLTEAQLDRVGCFQYSPVEGAPANL 345

Query: 378 MLEQ-VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPW 434
           +    V ++VK +R        +    +     +G+ IEVLI++       G+    +P 
Sbjct: 346 LDAAIVPDDVKQDRWDRFMAHQQAISAARLQMKIGKEIEVLIDEVDDRGAVGRCFFDAPE 405

Query: 435 LQSVVL----NSKNHNIGDIIKVRITDVKISTLYGELV 468
           +   V     +      GD I  R+TD     L+ E++
Sbjct: 406 IDGNVFIGLEDGSTVQPGDKIMCRVTDADEYDLWAEML 443


>gi|71908364|ref|YP_285951.1| hypothetical protein Daro_2751 [Dechloromonas aromatica RCB]
 gi|123774323|sp|Q47CF0|RIMO_DECAR RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|71847985|gb|AAZ47481.1| SSU ribosomal protein S12P methylthiotransferase [Dechloromonas
           aromatica RCB]
          Length = 440

 Score =  355 bits (911), Expect = 9e-96,   Method: Composition-based stats.
 Identities = 120/455 (26%), Positives = 204/455 (44%), Gaps = 35/455 (7%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
                S GC     D+ R+     ++GYE   S D++DL+++NTC   + A E+    +G
Sbjct: 9   TVGFVSLGCPKASSDAERILTKLRAEGYEISPSYDNSDLVIVNTCGFIDAAVEESLDAIG 68

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                         +  V+V GC+  A+G+ +    P V  V GP     +  ++     
Sbjct: 69  EA---------LNENGKVIVTGCLG-AKGDIVQTTHPAVLAVTGPHAADEVMGIVHTHLP 118

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                       D +  L +   G        A+L I EGC+  CTFC++P  RG  +SR
Sbjct: 119 ---------KPHDPYSDL-VPPQGVRLTPDHFAYLKISEGCNHSCTFCIIPSLRGPLVSR 168

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAW-----RGKGLDGEKC---TFSDLLYSLSEI 257
            +  V+ EA  L   GV EI ++ Q+ +A+           G K       +L  +L+ +
Sbjct: 169 PVGDVLAEAENLARAGVKEILVISQDTSAYGVDLKYRTAFWGGKPVKSRLKELCEALASL 228

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
              VRL Y   +P       + A G    ++PYL +P Q  S +ILK+M R  +A    +
Sbjct: 229 GIWVRLHYVYPYPSVDDVIPLMAEG---KILPYLDVPFQHASPKILKAMKRPASAENTLE 285

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
            I + R + P+I I S FI GFPGET++DF   +  ++     +  +F YSP  G   + 
Sbjct: 286 RIAKWREICPEIVIRSTFITGFPGETEEDFDQLIQFLEDAKLDRVGAFAYSPVDGAKANE 345

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPWL 435
           + E + E+V+ +R   L +   +       A +  +I+VL+++  +E    +    +P +
Sbjct: 346 LGELLPEDVREDRRRWLMQVQEDISADKLAAKIDTVIQVLVDEVDEEGTIARSKADAPEI 405

Query: 436 QSVVLNSK--NHNIGDIIKVRITDVKISTLYGELV 468
             +V      +   GD ++V++ D     LY ++V
Sbjct: 406 DGLVYLDGHFDAQPGDFLQVKVIDADHHDLYAQVV 440


>gi|197303727|ref|ZP_03168764.1| hypothetical protein RUMLAC_02456 [Ruminococcus lactaris ATCC
           29176]
 gi|197297247|gb|EDY31810.1| hypothetical protein RUMLAC_02456 [Ruminococcus lactaris ATCC
           29176]
          Length = 438

 Score =  355 bits (911), Expect = 9e-96,   Method: Composition-based stats.
 Identities = 133/445 (29%), Positives = 236/445 (53%), Gaps = 21/445 (4%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + ++  + + GC++N Y++  M++M    GYE V   + AD+ V+NTC +   A  K   
Sbjct: 1   MSKKAALHNLGCKVNAYETEAMQEMLEKAGYEIVPFKEGADVYVINTCTVTNIADRKSRQ 60

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            L R R       K   D +VV AGC  QA+  ++      +++V+G      L  +L+ 
Sbjct: 61  MLHRAR-------KMNPDAVVVAAGCYVQAQEGKV---DSCIDIVLGNNKKKDLIRILDE 110

Query: 143 ARFG------KRVVDTDYSVEDKFERLSIVDGGYNRK-RGVTAFLTIQEGCDKFCTFCVV 195
            R        ++ +  D  +ED             R      A++ +Q+GC++FCT+C++
Sbjct: 111 YRKSRAESGREKEILPDVELEDIGHTKEYESLNLTRPGDHTRAYIKVQDGCNQFCTYCII 170

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
           PY RG   SRS+  V +E R L +NG  E+ L G ++++  G   D E+    DL+ ++ 
Sbjct: 171 PYARGRVRSRSMEDVTEEVRTLAENGYKEVVLTGIHLSS-YGIDFDKERHLL-DLIRAVH 228

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
           +I+G+ R+R  +  P  +++   +A   L  + P+ HL +QSG +  LK MNRR+T+ EY
Sbjct: 229 QIEGIERIRLGSLEPGIITEEFAEAISKLPKMCPHFHLSLQSGCNATLKRMNRRYTSEEY 288

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
            +    +R    + A+++D IVGFPGET+++F A+ + VD I + +   FKYS R GT  
Sbjct: 289 AERCGILRKYFENPALTTDVIVGFPGETEEEFEASRNFVDSIDFYETHIFKYSRREGTKA 348

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK--LVGRSP 433
           + M +QV E  K+ R   + +   +++ ++ ++ +G+ +EVL+E+  +  G+    G + 
Sbjct: 349 AVMPDQVSEGKKSARSAEMIEMGEQKRRAYEESFIGKEVEVLVEEEIERNGEIFWTGHTK 408

Query: 434 WLQSVVLNSKNHNIGDIIKVRITDV 458
               + L S+ +    I+KV+I D 
Sbjct: 409 EYIKIALQSRENLRNCIVKVQIEDA 433


>gi|222055074|ref|YP_002537436.1| MiaB-like tRNA modifying enzyme [Geobacter sp. FRC-32]
 gi|221564363|gb|ACM20335.1| MiaB-like tRNA modifying enzyme [Geobacter sp. FRC-32]
          Length = 438

 Score =  355 bits (911), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 136/445 (30%), Positives = 229/445 (51%), Gaps = 16/445 (3%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
            Q   + + GC++N ++S  M +    +G+  V     AD+ V+NTC +  K   +    
Sbjct: 6   KQTVAITTLGCKINQFESAAMAETLGKEGFSIVPFDGAADIYVINTCTVTSKTDAESRRL 65

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           + R         ++     +VV GC AQ   EE+ +  P VN+++G      + E+L+  
Sbjct: 66  IRRA-------SRQNPSAKIVVTGCYAQVAFEEL-QDMPGVNLILGNSEKKGIAEMLKDL 117

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
              +RV+ +D S E   ER + ++      R   AFL +Q GCD FC++C+VPY RG   
Sbjct: 118 GENQRVLVSDISRELN-ERGTRLESFAEHTR---AFLQVQNGCDAFCSYCIVPYARGRSR 173

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           S SL + +   R   + G  E+ L G ++ A  G  L+    +  DLL +  + + + R+
Sbjct: 174 SVSLEEALAGIRTFAERGFKEVVLTGIHLGA-YGLDLNP-PLSLLDLLNAAEKERLVERI 231

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R  +  P ++SD LI        + P+LH+P+QSG DR+LK+MNR ++  ++R +++++ 
Sbjct: 232 RIGSVEPTEVSDALISFLAKSATVCPHLHIPLQSGHDRVLKAMNRNYSTADFRSVMEKLD 291

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           +  P I I +D I GFPGETDD+F+     ++ +  A    F +SPR GTP + M   V 
Sbjct: 292 TDLPSICIGTDIITGFPGETDDEFQDGYRFLESLPLAYFHVFPFSPRSGTPAATMEGHVH 351

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
            +V  ER   L+K   E++ SF  + +G+ ++VL+    +E   L G S     V +   
Sbjct: 352 SSVIKERAKALRKLSEEKKKSFYRSFIGEKLQVLV--QTREGDLLKGLSRNYIPVFMEGD 409

Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468
           +  +     VRIT V+   + GE++
Sbjct: 410 DDLLKTEQLVRITGVEREKVTGEVI 434


>gi|12654747|gb|AAH01215.1| CDK5RAP1 protein [Homo sapiens]
 gi|325463933|gb|ADZ15737.1| CDK5 regulatory subunit associated protein 1 [synthetic construct]
          Length = 510

 Score =  355 bits (911), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 129/467 (27%), Positives = 219/467 (46%), Gaps = 74/467 (15%)

Query: 17  IVDQCI-VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREK 75
           ++D+ +   ++ ++++YGCQMNV D+     +    GY R +++ +AD+I+L TC IREK
Sbjct: 91  MMDELLGRQRKVYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCSIREK 150

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135
           A + +++ L +++ LK  R +    L + + GC+A+   EEIL R  +V+++ GP  Y  
Sbjct: 151 AEQTIWNRLHQLKALKTRRPRSRVPLRIGILGCMAERLKEEILNREKMVDILAGPDAYRD 210

Query: 136 LPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
           LP+LL  A  G++  +   S+++ +  +  V          +AF++I  GCD  C++C+V
Sbjct: 211 LPQLLAVAESGQQAANVLLSLDETYADVMPVQTS---ASATSAFVSIMRGCDNMCSYCIV 267

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
           P+TRG E SR ++ +++E +KL +                              +L  + 
Sbjct: 268 PFTRGRERSRPIASILEEVKKLSEQ-----------------------------VLQLIH 298

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
           E   + +  +  +                           QSGS R+L++M R ++   Y
Sbjct: 299 ERDNICKQIHLPA---------------------------QSGSSRVLEAMRRGYSREAY 331

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
            +++  IR   P +++SSDFI GF GET++D   T+ L+ ++ Y   F F YS R  T  
Sbjct: 332 VELVHHIRESIPGVSLSSDFIAGFCGETEEDHVQTVSLLREVQYNMGFLFAYSMRQKTRA 391

Query: 376 S-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSP 433
              + + V E VK  RL  L    RE+    N   VG    VL+E   K     L GR+ 
Sbjct: 392 YHRLKDDVPEEVKLRRLEELITIFREEATKANQTSVGCTQLVLVEGLSKRSATDLCGRND 451

Query: 434 WLQSVVLNSKN------------HNIGDIIKVRITDVKISTLYGELV 468
               V+                    GD + V+IT     TL G ++
Sbjct: 452 GNLKVIFPDAEMEDVNNPGLRVRAQPGDYVLVKITSASSQTLRGHVL 498


>gi|237737741|ref|ZP_04568222.1| Fe-S oxidoreductase [Fusobacterium mortiferum ATCC 9817]
 gi|229419621|gb|EEO34668.1| Fe-S oxidoreductase [Fusobacterium mortiferum ATCC 9817]
          Length = 432

 Score =  355 bits (911), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 122/442 (27%), Positives = 228/442 (51%), Gaps = 15/442 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +R    + GC++N Y++  +++    +GY      D+AD+ ++N+C +   A  K  + L
Sbjct: 5   KRVAFYTLGCKVNQYETESIKNQLLQKGYTETAFEDEADIYIVNSCTVTSVADRKTRNML 64

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R +       K      V+V GC AQ   +E+L     ++ V+G +    +   +E   
Sbjct: 65  RRAK-------KVNPHSKVIVTGCYAQTNSKELL-EMEDIDYVIGNKYKKGIVNFIEDIE 116

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
                   + ++ D++E           +    A++ IQ+GC+ FC++C +P+ RG   S
Sbjct: 117 NRTMDRLKNDNIFDEYEYTEY--EFATLREMSRAYVKIQDGCNNFCSYCKIPFARGRSRS 174

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R    ++ E  KL++ G  EI L+G N+ A  G+ L+ E   F DLL  + ++KGL R+R
Sbjct: 175 RKKENILKEIEKLVNEGFKEIILIGINLGA-YGEDLE-EDIDFEDLLEKILQVKGLERVR 232

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
             + +P  +SD  +        LMP+LH+ +QS  D +LK M R++ +    + + ++++
Sbjct: 233 IGSVYPDKISDRFVD-MFKYKNLMPHLHISLQSCDDTVLKMMKRKYGSDLIEERLLKLKN 291

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
              ++  ++D IVGFPGE+++ F+ + +L++KIG++    F+YS R  T  S +  ++D 
Sbjct: 292 SVGNMEYTADIIVGFPGESEEMFQNSYNLIEKIGFSGLHIFQYSDRENTVASRLENKIDS 351

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
            VK ER   L++  +E  +   +  +G+ +++LIE+     G L G S     V +    
Sbjct: 352 KVKKERADRLEELKKEMAIIERENYIGKSLKILIEEEI--DGYLYGYSENYLRVKVKGDK 409

Query: 445 HNIGDIIKVRITDVKISTLYGE 466
             I +II+V+IT ++   L  +
Sbjct: 410 KMINEIIEVKITSLEKELLVAD 431


>gi|237720682|ref|ZP_04551163.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|229449517|gb|EEO55308.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
          Length = 436

 Score =  355 bits (910), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 105/454 (23%), Positives = 202/454 (44%), Gaps = 35/454 (7%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEKVYS 82
           +   + + GC  N+ DS ++       GY   +  +    ++ V+NTC     A E+  +
Sbjct: 4   KTIDIITLGCSKNLVDSEQLMRQLEEVGYSVTHDTENPQGEIAVINTCGFIGDAKEESIN 63

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +      K      G    + V GC+++   +E+    P V+   G   +  L + L +
Sbjct: 64  MILEFAERKEE----GDLKKLFVMGCLSERYLKELAVEIPQVDKFYGKFNWKELLQDLGK 119

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
                      Y  E   ER       Y       A+L I EGCD+ C++C +P   G  
Sbjct: 120 V----------YHDELYIERTLTTPQHY-------AYLKISEGCDRKCSYCAIPIITGHH 162

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           IS+ + +++DE R L+  GV E  ++ Q +  + G     +K    +L+  +S+I G+  
Sbjct: 163 ISKPMEEILDEVRYLVSQGVKEFQVIAQELT-YYGIDRY-KKQMLPELIERISDIPGVEW 220

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R   ++P      L +   + D +  Y+ + +Q  SD +L+ M R+ +  +  ++I++ 
Sbjct: 221 IRLHYAYPAHFPTDLFRVMRERDNVCKYMDIALQHISDNMLQLMRRQVSKEDTYRLIEQF 280

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN-MLEQ 381
           R   P I + +  +VG PGET++DF    + V K+ + +  +F YS   GT  +    + 
Sbjct: 281 RKEVPGIHLRTTLMVGHPGETEEDFEELKEFVRKVRFDRMGAFAYSEEEGTYAAKAYEDS 340

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQS 437
           + + VK  RL  L    +      +   +G+ ++++I++   E    +GR+    P +  
Sbjct: 341 IPQEVKQARLDELMDIQQGISAELSAEKIGKQMKIIIDRL--EGDYYIGRTEFDSPEVDP 398

Query: 438 VVLNS---KNHNIGDIIKVRITDVKISTLYGELV 468
            VL     +   IG   +V +T+     LY +++
Sbjct: 399 EVLVKRSERELKIGQFYQVEVTNADDFDLYAKII 432


>gi|254515177|ref|ZP_05127238.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [gamma
           proteobacterium NOR5-3]
 gi|219677420|gb|EED33785.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [gamma
           proteobacterium NOR5-3]
          Length = 461

 Score =  355 bits (910), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 127/469 (27%), Positives = 198/469 (42%), Gaps = 33/469 (7%)

Query: 9   GVAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLN 68
             A   S          +    S GC   + DS R+       GY+ V + DDA+L+V+N
Sbjct: 11  NRAEENSMASKAASNSSKVGFVSLGCPKALVDSERILSQLKLDGYDIVGTYDDAELVVVN 70

Query: 69  TCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQ-AEGEEILRRSPIVNVV 127
           TC   + A E+    +G              +  V+V GC+ + A+ E I    P V  V
Sbjct: 71  TCGFIDSAKEESLQAIGEA---------ISENGRVIVTGCMGKGADAERIRSEHPKVLSV 121

Query: 128 VGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCD 187
            GP  Y  +   +                 D F  L I            A+L I EGC+
Sbjct: 122 TGPAAYEEVVAAVHEY-------VPAPPPRDVFTDL-IPTSAVRLTPRHYAYLKISEGCN 173

Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLD 241
             C+FC++P  RG  +SR +  V+DEA  L+ +GV E+ ++ Q+ +A+      R     
Sbjct: 174 HRCSFCIIPSMRGDLVSRPIGDVMDEAEALVRSGVRELLVISQDTSAYGVDLKYRTGFWQ 233

Query: 242 GEK--CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
           G         L  +L E+   VRL Y   +P       + A G    ++PYL +P Q  S
Sbjct: 234 GRPLSTRMESLCAALGELGVWVRLHYVYPYPHVDKVIPLMAEG---KILPYLDIPFQHAS 290

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
             +LK M R     +    I   R++ PDI + S FIVGFPGETD +F   ++ +D+   
Sbjct: 291 HAVLKRMKRPAATEKVLNRISNWRALCPDITLRSTFIVGFPGETDAEFEELLNFLDEAQL 350

Query: 360 AQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419
            +   F+YSP  G   + +   V + +K ER      + +        A VG+ IEVLI+
Sbjct: 351 DRVGCFQYSPVTGAAANELEGHVPDELKQERYERFMLRQQAISAKRLQARVGREIEVLID 410

Query: 420 KHGKEK--GKLVGRSPWLQS-VVLNS-KNHNIGDIIKVRITDVKISTLY 464
               E   G+    +P +   V +    +   GD ++  ++      L+
Sbjct: 411 TVDHEGAVGRSSADAPEIDGRVHIPGASDLTPGDWVRGTVSRADDYDLW 459


>gi|302385311|ref|YP_003821133.1| MiaB-like tRNA modifying enzyme [Clostridium saccharolyticum WM1]
 gi|302195939|gb|ADL03510.1| MiaB-like tRNA modifying enzyme [Clostridium saccharolyticum WM1]
          Length = 454

 Score =  355 bits (910), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 127/441 (28%), Positives = 228/441 (51%), Gaps = 25/441 (5%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++  + + GC++N Y++  M+ +  + GYE V   + AD+ ++NTC +   A  K    L
Sbjct: 2   KKAALHNLGCKVNSYETEAMQQLLENAGYEIVPFAEGADVYIINTCSVTNIADRKSRQML 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R +       K     +VV AGC  QA GEE+ ++   V++V+G      L  +LE   
Sbjct: 62  HRAK-------KMNPGAVVVAAGCYVQAAGEEL-KKDEAVDLVIGNNKKTELVSVLEEYF 113

Query: 145 FGKRVVDTDYS-----VEDKFERLSIVDGGYNRK----------RGVTAFLTIQEGCDKF 189
             ++  + + +     +  K    +++D G  R+              AF+ +Q+GC++F
Sbjct: 114 ASRKGPEAEIACGYPVLPPKAGLDAVIDIGDTREYENLSINRIADHTRAFIKVQDGCNQF 173

Query: 190 CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSD 249
           C++C++PYTRG   SR   +VV+E ++L  +G  EI   G +++++     + E+ T  D
Sbjct: 174 CSYCIIPYTRGRVRSRKPDEVVEEVKRLTASGYQEIVFTGIHLSSYGMDFPEKERLTLLD 233

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
           L+  + E++GL R+R  +  PR +++        L  + P+ HL +QSG D  LK MNR 
Sbjct: 234 LVKRVHEVEGLKRIRLGSLEPRIVTEKFAAELARLSKICPHFHLSLQSGCDDTLKRMNRH 293

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369
           +T  EY    D +RS   + AI++D IVGFPGE  ++F+ T + ++K+ + +   FKYS 
Sbjct: 294 YTTEEYFNCCDVLRSAFHNPAITTDVIVGFPGERPEEFKTTREYLEKVQFYEMHVFKYSK 353

Query: 370 RLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG--K 427
           R GT  + M +Q+ E+ K +R   L    +E  +++ ++ +G   EVL+E+     G   
Sbjct: 354 RNGTKAAVMPDQIPESTKTDRSNELLCLEKEMSLAYRESWLGCRTEVLLEEEFWWNGTRY 413

Query: 428 LVGRSPWLQSVVLNSKNHNIG 448
           ++G +       +  +    G
Sbjct: 414 MIGHTREYVKAAVPYEEGLRG 434


>gi|237716499|ref|ZP_04546980.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262408097|ref|ZP_06084645.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacteroides sp. 2_1_22]
 gi|294645091|ref|ZP_06722817.1| MiaB-like protein [Bacteroides ovatus SD CC 2a]
 gi|294809491|ref|ZP_06768194.1| MiaB-like protein [Bacteroides xylanisolvens SD CC 1b]
 gi|229444146|gb|EEO49937.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262354905|gb|EEZ03997.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacteroides sp. 2_1_22]
 gi|292639597|gb|EFF57889.1| MiaB-like protein [Bacteroides ovatus SD CC 2a]
 gi|294443309|gb|EFG12073.1| MiaB-like protein [Bacteroides xylanisolvens SD CC 1b]
          Length = 436

 Score =  355 bits (910), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 106/454 (23%), Positives = 203/454 (44%), Gaps = 35/454 (7%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEKVYS 82
           +R  + + GC  N+ DS ++       GY   +  +    ++ V+NTC     A E+  +
Sbjct: 4   KRIDIITLGCSKNLVDSEQLMRQLEEVGYSVTHDTENPQGEIAVINTCGFIGDAKEESIN 63

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +      K      G    + V GC+++   +E+    P V+   G   +  L + L +
Sbjct: 64  MILEFAERKEE----GDLKKLFVMGCLSERYLKELAVEIPQVDKFYGKFNWKELLQDLGK 119

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
                      Y  E   ER       Y       A+L I EGCD+ C++C +P   G  
Sbjct: 120 V----------YHDELYIERTLTTPQHY-------AYLKISEGCDRKCSYCAIPIITGRH 162

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           IS+ + +++DE R L+  GV E  ++ Q +  + G     +K    +L+  +S+I G+  
Sbjct: 163 ISKPMEEILDEVRYLVSQGVKEFQVIAQELT-YYGIDRY-KKQMLPELIERISDIPGVEW 220

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R   ++P      L +   + D +  Y+ + +Q  SD +L+ M R+ +  +  ++I++ 
Sbjct: 221 IRLHYAYPAHFPTDLFRVMRERDNVCKYMDIALQHISDNMLQLMRRQVSKKDTYRLIEQF 280

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN-MLEQ 381
           R   P I + +  +VG PGET++DF    + V K+ + +  +F YS   GT  +    + 
Sbjct: 281 RKEVPGIHLRTTLMVGHPGETEEDFEELKEFVRKVRFDRMGAFAYSEEEGTYAAESYEDS 340

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQS 437
           + + VK  RL  L    +      +   +G+ ++++I++   E    +GR+    P +  
Sbjct: 341 IPQEVKQARLDELMDIQQGISAELSAEKIGKQMKIIIDRL--EGDYYIGRTEFDSPEVDP 398

Query: 438 VVLNS---KNHNIGDIIKVRITDVKISTLYGELV 468
            VL     +   IG   +V +T+     LY +++
Sbjct: 399 EVLVKRSERELKIGQFYQVEVTNADDFDLYAKII 432


>gi|330838436|ref|YP_004413016.1| RNA modification enzyme, MiaB family [Selenomonas sputigena ATCC
           35185]
 gi|329746200|gb|AEB99556.1| RNA modification enzyme, MiaB family [Selenomonas sputigena ATCC
           35185]
          Length = 432

 Score =  355 bits (910), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 141/447 (31%), Positives = 228/447 (51%), Gaps = 17/447 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           +P +  + + GC++N +++  ME +F  +GY  V   + AD+ V+NTC +     +K   
Sbjct: 1   MP-KAALTTLGCKVNQFETETMEGLFRQRGYAIVPFDEAADVYVINTCSVTSLGEKKSRQ 59

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            + R R L           ++ V GC AQ   EEI      V VV+G +    + + +ER
Sbjct: 60  LIRRARRL-------NERAVIAVTGCYAQVAPEEIRS-IEGVRVVLGTKERAAIVDHVER 111

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           A     V D    +    E   I   G   +    AFL I+EGC+ FC+FC++PY RG  
Sbjct: 112 AAREAGVFDGTGDIMHASEFEDIPLFGAPAR--TRAFLKIEEGCENFCSFCIIPYARGPV 169

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR L  V  EA KL+  G  EI L G ++  +   G D    T +D + ++  + GL R
Sbjct: 170 RSRLLKSVRREAAKLLAMGFKEIVLTGIHLGCY---GRDLGDVTLADAVRAVLSLPGLKR 226

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LR  +    ++SD L+      +    +LHLP+Q+GSD +L++MNR +   ++  +I+R+
Sbjct: 227 LRLGSLESIELSDDLLALLAQEERFAGHLHLPLQAGSDEVLRAMNRHYDTAKFAALIERV 286

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
               P +AIS+D IVGFPGET + F  ++  V+++ +A+   F YSPR GTP +    QV
Sbjct: 287 ERAVPGVAISTDIIVGFPGETQELFEESLAFVERMNFARMHVFPYSPRRGTPAAAFAAQV 346

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
            E  K ER+  +Q    ++  +F+ A +G  + VL E   + +G   G +     V  ++
Sbjct: 347 PEAEKKERVHRMQALAAKKSEAFHAAFLGTEMPVLFE--TEREGVTDGLTANYIRVYTDA 404

Query: 443 KNHNIGDIIKVRITDVKISTLYGELVV 469
                GDI  +R+  +    ++GEL+ 
Sbjct: 405 P-VRTGDIHAMRLVHLYRDGVWGELLA 430


>gi|254369038|ref|ZP_04985051.1| hypothetical protein FTAG_00878 [Francisella tularensis subsp.
           holarctica FSC022]
 gi|157121959|gb|EDO66129.1| hypothetical protein FTAG_00878 [Francisella tularensis subsp.
           holarctica FSC022]
          Length = 439

 Score =  354 bits (909), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 126/460 (27%), Positives = 204/460 (44%), Gaps = 40/460 (8%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           +P+  FV S GC  N+ DS R+     ++GY+ V+S D+AD++++NTC     A ++   
Sbjct: 4   IPKIGFV-SLGCPKNLVDSERIITKLKAEGYDLVDSYDNADMVIVNTCGFLNSAIDESLE 62

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +G              +  V+V GC+     + I  + P V  + GPQ Y     L+E 
Sbjct: 63  VIGEA---------IAENGKVLVTGCLGNK-ADLIKEKHPEVLSITGPQDYEN---LIEA 109

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
                 +   D+          +   G        ++L I EGC+  CTFC++P  RG  
Sbjct: 110 VHTHAPIFANDFVS-------LVPPQGIKLTPRHYSYLKISEGCNNTCTFCIIPDIRGKL 162

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-----RGKGLDGEK---CTFSDLLYSL 254
            SRS+  ++ EA KL + GV E+ ++ Q+ +A+        G+   K       DL  +L
Sbjct: 163 KSRSIDNIMKEAEKLKNAGVKELLVISQDTSAYGVDIKYKSGIWNNKEYQSNIIDLATAL 222

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
            ++    RL Y   +P       + A G    ++PYL + +Q  S  +LK M R     +
Sbjct: 223 GDLDMWTRLHYVYPYPHVDKIVPLMAQG---KILPYLDVSLQHSSPEVLKRMKRPAHTQK 279

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
               I++ R + PDI ISS FIVGFPGET+ DF   +D  +K    +   FKYS   G  
Sbjct: 280 TLDRINKWRDICPDITISSTFIVGFPGETEADFEHLLDFAEKAQLDRVGCFKYSEVEGAK 339

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS-- 432
            +     + E +K +RL        +         VG   +V+I+   K++   +GR+  
Sbjct: 340 ANQFDNLISEEIKQQRLDEFMGLQAQISADKLQRFVGTEQQVIIDVINKDENYAIGRTKY 399

Query: 433 --PWLQSVVLNSK----NHNIGDIIKVRITDVKISTLYGE 466
             P +   V+       N  +G+   V IT+     L  +
Sbjct: 400 DAPEVDGQVIIGDALERNLKVGEFANVEITESTEYDLIAD 439


>gi|194224319|ref|XP_001500825.2| PREDICTED: CDK5 regulatory subunit associated protein 1 [Equus
           caballus]
          Length = 539

 Score =  354 bits (909), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 145/478 (30%), Positives = 234/478 (48%), Gaps = 86/478 (17%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ ++++YGCQMNV D+     +    GY R N++ +AD+I+L TC IREKA + +++ L
Sbjct: 102 RKVYLETYGCQMNVNDTEIAWSILQKSGYLRTNNLQEADVILLVTCSIREKAEQTIWNRL 161

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            ++R LK  R +    L + + GC+A+   EEIL R  IV+++ GP  Y  LP LL  A 
Sbjct: 162 HQLRALKTKRPRSRVPLRIGILGCMAERLKEEILNREKIVDILAGPDAYRDLPRLLAVAE 221

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G++  +   S+++ +  +  V          +AF++I  GCD  C++C+VP+TRG E S
Sbjct: 222 SGQQAANVLLSLDETYADIMPVQTS---PSATSAFVSIMRGCDNMCSYCIVPFTRGRERS 278

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG---------------KGLDGEKCT--- 246
           R ++ +V+E RKL + G+ E+TLLGQNVN++R                +G      T   
Sbjct: 279 RPVASIVEEVRKLSEQGLKEVTLLGQNVNSFRDNSEVQFNNAMSTSLSRGFSTNYKTKQG 338

Query: 247 ---FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
              F+ LL  +S I   +R+R+T+ HP+D  D +++   + D +   +H+P QSGS R+L
Sbjct: 339 GLRFAHLLDQVSRIDPEMRIRFTSPHPKDFPDEVLQLIHERDNICKQIHVPAQSGSSRVL 398

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           ++M R ++   Y ++I  IR   P +++SSDFI GF GET++D   T+ L+ ++ Y   F
Sbjct: 399 EAMRRGYSREAYVELIHHIRESIPGVSLSSDFIAGFCGETEEDHLQTVSLLREVQYNMGF 458

Query: 364 SFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK 423
            F YS R                                                 +H K
Sbjct: 459 LFAYSMR-------------------------------------------------QHSK 469

Query: 424 EKGK-LVGRSPWLQSVVLNSKN------------HNIGDIIKVRITDVKISTLYGELV 468
                L GR+     V+                    GD + V+IT     TL G ++
Sbjct: 470 RSSTDLCGRNDGNLKVIFPDVEIEDVTNSGLRVRAQPGDYVLVKITSASSQTLKGHVL 527


>gi|329894523|ref|ZP_08270337.1| Ribosomal protein S12p Asp88 methylthiotransferase [gamma
           proteobacterium IMCC3088]
 gi|328923048|gb|EGG30373.1| Ribosomal protein S12p Asp88 methylthiotransferase [gamma
           proteobacterium IMCC3088]
          Length = 443

 Score =  354 bits (909), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 119/452 (26%), Positives = 190/452 (42%), Gaps = 33/452 (7%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
                S GC   + DS R+       GY    S + ADL+++NTC   + A ++    +G
Sbjct: 10  TVGFVSLGCPKALVDSERILTQLQQDGYAISGSYEGADLVIVNTCGFIDSAKQESLDAIG 69

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCV-AQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
                         +  V+V GC+ A  + + I    P V  V GP  Y  +   +    
Sbjct: 70  EALA---------ENGRVIVTGCMGAGDDAKRIQDLHPKVLSVTGPAAYEDVMTAVRHH- 119

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
                       E       + D G        A+L I EGC+  C+FC++P+ RG  +S
Sbjct: 120 -------VPKPQEHNPFIDLVPDHGIKLTPRHYAYLKISEGCNHRCSFCIIPHLRGDLVS 172

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYSLSE 256
           R    V+ EA  L+  GV E+ ++ Q+ +A+      +    DG   K     L  +L  
Sbjct: 173 RPAGDVMREAEALVRGGVRELLVVSQDTSAYGVDLKYKTDFWDGRPVKTQMLALSEALGS 232

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           +   VR+ Y   +P   +   + A G    ++PYL +P Q  S  ILK+M R   A +  
Sbjct: 233 LGVWVRMHYVYPYPHVDNVIPLMAEG---KILPYLDIPFQHASHDILKAMKRPAAAEKVL 289

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
             I   R V PD+++ S FIVGFPGET+  F+  +D + +        F+YS   G P +
Sbjct: 290 DRIHSWRKVCPDLSLRSTFIVGFPGETETQFQELLDFISEAQLDNVGCFQYSSVEGAPAN 349

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPW 434
            +   V + VK +R        +        A +G   +++I+    E   G+  G +P 
Sbjct: 350 ALANPVADEVKQDRWERFMALQQTISAERRAAKIGTEQQLIIDHVDSEGAMGRTRGDAPE 409

Query: 435 LQSVV-LNS-KNHNIGDIIKVRITDVKISTLY 464
           +  VV L    +   GD++   IT      L+
Sbjct: 410 IDGVVHLPGYTDLRPGDLVTAEITGADEYDLW 441


>gi|182679251|ref|YP_001833397.1| MiaB-like tRNA modifying enzyme YliG [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|238065293|sp|B2IHC3|RIMO_BEII9 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|182635134|gb|ACB95908.1| MiaB-like tRNA modifying enzyme YliG [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 449

 Score =  354 bits (909), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 122/471 (25%), Positives = 213/471 (45%), Gaps = 36/471 (7%)

Query: 11  AHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC 70
           AH V           +    S GC   + DS R+     ++GYE   S   AD +++NTC
Sbjct: 2   AHPVMTFDKPSSASPKISFVSLGCPKALVDSERIITRLRAEGYELTKSHRGADAVIVNTC 61

Query: 71  HIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGP 130
              + A  +  + +G                 ++V GC+  AE E +    P +  + GP
Sbjct: 62  GFLDSAKAESLAAIGEAAAENGK---------IIVTGCMG-AEPESLQTAYPDLFAITGP 111

Query: 131 QTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190
           Q Y  + E +  A           +  D      +   G        A+L I EGC+  C
Sbjct: 112 QAYESVMEAVHAA----------IAPPDNPFTELVPPQGIKLTPRHYAYLKISEGCNNRC 161

Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-----RGKGLDGEKC 245
           +FC++P+ RG  +SR + +++ EA KL+  GV EI ++ Q+ +A+       + L G++ 
Sbjct: 162 SFCIIPHLRGDLVSRPIGEILQEAEKLVSAGVKEILVVSQDTSAYGVDLKYAETLYGDRT 221

Query: 246 T---FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
               F DL   L  +   VRL Y   +P   +  ++    +   ++PYL +P Q  S  +
Sbjct: 222 LRSKFIDLARELGSLGVWVRLHYIYPYPHVDA--VLDLMAE-GKILPYLDIPFQHASRNV 278

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           L++M R     +    I+  R + PD+ + S FIVGFPGET+DDF+  +D + +    + 
Sbjct: 279 LRAMRRPGDQEKTLSRIEEWRKLCPDLTLRSTFIVGFPGETEDDFQILLDWLSEAKLDRV 338

Query: 363 FSFKYSPRLGTPGSNM-LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKH 421
            +FKY P    P +++ L  V   V+  R     +  ++         +G+ + V+I++ 
Sbjct: 339 GAFKYEPVADAPANDLDLTPVAPEVQTRRYQRFMEHQQKISARRLREKIGKHVSVIIDEA 398

Query: 422 GKEK--GKLVGRSPWLQS-VVLNS-KNHNIGDIIKVRITDVKISTLYGELV 468
             +   G+  G +P +   V + + +   +GDI+KV+I       L+G+ V
Sbjct: 399 SPKAAIGRTKGDAPSIDGKVHITTHRPLRVGDIVKVKIEAADAYDLHGKAV 449


>gi|330985158|gb|EGH83261.1| ribosomal protein S12 methylthiotransferase [Pseudomonas syringae
           pv. lachrymans str. M301315]
          Length = 443

 Score =  354 bits (909), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 130/458 (28%), Positives = 210/458 (45%), Gaps = 36/458 (7%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R  + S GC   + DS R+      +GYE V + +DAD++V+NTC   + A  +    +G
Sbjct: 7   RVGMISLGCPKALVDSERILTQLRMEGYEVVATYEDADVVVVNTCGFIDTAKAESLEVIG 66

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                    IKE G   V+V GC+   +   I    P V  V GPQ Y ++   +     
Sbjct: 67  EA-------IKENG--KVIVTGCMG-VDANVIRDVHPSVLSVTGPQQYEQVVNAVHDVVP 116

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            ++  +    +        +   G        A+L I EGC+  C+FC++P  RG  +SR
Sbjct: 117 PRKDHNPLIDL--------VPPQGVKLTPRHYAYLKISEGCNHSCSFCIIPSMRGKLVSR 168

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYSLSEI 257
            +  V+DEA++L+ +GV E+ ++ Q+ +A+      R    DG+  K   ++L  +L  +
Sbjct: 169 PVGDVLDEAKRLVKSGVKELLVISQDTSAYGVDVKYRTGFWDGQPVKTRMTELCQALGSM 228

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
              VRL Y   +P       + A G    ++PYL +P Q  S +ILK M R     +   
Sbjct: 229 GVWVRLHYVYPYPHVDELIPLMAAG---KILPYLDIPFQHASPKILKLMKRPAFEDKTLA 285

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
            I   R   PD+ I S FIVGFPGET++DF+  +D + +    +   F+YSP  G P + 
Sbjct: 286 RIKNWREQCPDLIIRSTFIVGFPGETEEDFQYLLDWLTEAQLDRVGCFQYSPVEGAPANL 345

Query: 378 MLEQ-VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPW 434
           +    V ++VK +R        +    +     +G+ IEVLI++       G+    +P 
Sbjct: 346 LDAAIVPDDVKQDRWDRFMAHQQAISAARLQMKIGKEIEVLIDEVDDRGAVGRCFFDAPE 405

Query: 435 LQSVVL----NSKNHNIGDIIKVRITDVKISTLYGELV 468
           +   V            GD I  R+TD     L+ E++
Sbjct: 406 IDGNVFIGLEEGSTVQPGDKIMCRVTDADEYDLWAEML 443


>gi|167626684|ref|YP_001677184.1| ribosomal protein S12 methylthiotransferase [Francisella
           philomiragia subsp. philomiragia ATCC 25017]
 gi|238065359|sp|B0U054|RIMO_FRAP2 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|167596685|gb|ABZ86683.1| 2-alkenal reductase [Francisella philomiragia subsp. philomiragia
           ATCC 25017]
          Length = 439

 Score =  354 bits (909), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 126/460 (27%), Positives = 204/460 (44%), Gaps = 40/460 (8%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           +P+  FV S GC  N+ DS R+     ++GY+ V+S D+AD++++NTC     A ++   
Sbjct: 4   IPKIGFV-SLGCPKNLVDSERIITKLKAEGYDLVDSYDNADMVIVNTCGFLNSAIDESLE 62

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +G              +  V+V GC+     + I  +   V  + GPQ Y     L+E 
Sbjct: 63  VIGEA---------IAENGKVLVTGCLGNK-ADLIKEKHSEVLSITGPQDYEN---LIEA 109

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
                 +   D+          +   G        ++L I EGC+  CTFC++P  RG  
Sbjct: 110 VHTHAPIFVNDFVS-------LVPPQGIKLTPRHYSYLKISEGCNNTCTFCIIPDIRGKL 162

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-----RGKGLDGEK---CTFSDLLYSL 254
            SRS+  ++ EA KL + GV E+ ++ Q+ +A+        G+  +K       DL  +L
Sbjct: 163 KSRSIDNIMKEAEKLKNAGVKELLVISQDTSAYGVDIKYKSGIWNDKEYQSNILDLATAL 222

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
            ++    RL Y   +P       + A G    ++PYL +P+Q  S  +LK M R     +
Sbjct: 223 GDLDMWTRLHYVYPYPHVDKIVPLMAQG---KILPYLDVPLQHSSPEVLKRMKRPAHTQK 279

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
               I++ R + PDI I S FIVGFPGET+ DF   +D  +K    +   FKYS   G  
Sbjct: 280 TLDRINKWRDICPDITIRSTFIVGFPGETEADFEHLLDFAEKAQLDRVGCFKYSEVEGAK 339

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS-- 432
            +     + E VK +RL        +         VG   +V+I+   K++   +GR+  
Sbjct: 340 ANQFDNLISEEVKQQRLDEFMGLQAQISADKLQRFVGTEQQVIIDVINKDENYAIGRTKY 399

Query: 433 --PWLQSVVLNSK----NHNIGDIIKVRITDVKISTLYGE 466
             P +   V+       N  +G+   V IT+     L  +
Sbjct: 400 DAPEVDGQVIIGDALERNLKVGEFATVEITESTEYDLIAD 439


>gi|218532165|ref|YP_002422981.1| ribosomal protein S12 methylthiotransferase [Methylobacterium
           chloromethanicum CM4]
 gi|238066390|sp|B7L2K9|RIMO_METC4 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|218524468|gb|ACK85053.1| MiaB-like tRNA modifying enzyme YliG [Methylobacterium
           chloromethanicum CM4]
          Length = 448

 Score =  354 bits (909), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 134/467 (28%), Positives = 204/467 (43%), Gaps = 35/467 (7%)

Query: 14  VSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIR 73
            S    +     R    S GC   + DS R+     ++GYE     D AD++++NTC   
Sbjct: 5   ASPSDTKGAAAPRISFVSLGCPKALVDSERILTHLRAEGYELSRRHDGADVVIVNTCGFL 64

Query: 74  EKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTY 133
           + A  +  + +G              +  V+V GC+  A+ EEI  + P +  V GPQ Y
Sbjct: 65  DSAKAESLAAIGEA---------MAENGRVIVTGCMG-AQPEEIREKYPNLLAVTGPQAY 114

Query: 134 YRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC 193
             +   +  A              D F  L I   G        A+L I EGC+  CTFC
Sbjct: 115 ESVVAAVHEA---------VPPAHDPFLDL-IPPQGVKLTPRHYAYLKISEGCNNRCTFC 164

Query: 194 VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE--------KC 245
           ++P  RG  +SR    V+ EA KL+  GV E+ ++ Q+ +A+                + 
Sbjct: 165 IIPSLRGDLVSRPAGDVLREAEKLVKAGVKELLVVSQDTSAYGIDTRYATSPWQDREVRA 224

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
            F DL   L E+   VRL Y   +P       + A G    ++PYL +P+Q  S  +LK 
Sbjct: 225 RFYDLASELGELGAWVRLHYVYPYPHVDEVIPLMAEG---KILPYLDMPLQHASPSVLKR 281

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           M R     +    I R R + PD+AI S FIVGFPGETD +F   +D + +    +   F
Sbjct: 282 MRRPGNQEKQLDRIRRWREICPDLAIRSTFIVGFPGETDAEFEELLDWIREARLERVGCF 341

Query: 366 KYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK 425
           +Y P  G   +++   V   VKAER     +      +    A VG+ + V+I++ G   
Sbjct: 342 EYEPVRGATANDLGLLVPPEVKAERKRRFMEAQSHVSLRLQRAKVGKRLSVIIDEAGPTG 401

Query: 426 --GKLVGRSPWLQS-VVLNS-KNHNIGDIIKVRITDVKISTLYGELV 468
             G+    +P +   V + S +    GDI+ V+I       L+G  V
Sbjct: 402 ARGRSKADAPEIDGSVHVTSRRPVRPGDIVTVKIERADAYDLHGIAV 448


>gi|240104185|ref|YP_002960494.1| RNA modification enzyme, MiaB family (MiaB) [Thermococcus
           gammatolerans EJ3]
 gi|239911739|gb|ACS34630.1| RNA modification enzyme, MiaB family (MiaB) [Thermococcus
           gammatolerans EJ3]
          Length = 424

 Score =  354 bits (909), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 126/444 (28%), Positives = 218/444 (49%), Gaps = 27/444 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R +V+SYGC  N  D   ME +    GYE     D AD +V+NTC +++    K+   + 
Sbjct: 3   RVYVESYGCSRNRADGEIMEAILLRAGYELAEGPDKADYVVVNTCAVKDPTELKMVRRIR 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            + +             V+  GC+     E I    P V+ ++G ++  R+ E +  A  
Sbjct: 63  ELLD---------SGKKVIATGCLVHVNPEAI---DPRVSGILGVKSIDRIAEAISVAER 110

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G++++  +   E   ++L +       K GV+  + I EGC   CT+C   + RG+  S 
Sbjct: 111 GEKLISVEGWRERNPDKLELPRLW---KPGVSFVVPISEGCLNACTYCATRFARGVLKSY 167

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
               V+   R+ +  G  EI L  ++     G  +       ++LL  ++ I+G  R+R 
Sbjct: 168 KPELVIKWVREAVSRGYREIILSSEDTG-CYGFDI---GTNLAELLDEITAIEGDFRVRV 223

Query: 266 TTSHPRD---MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
              +P       D LI+A+ D + +  +LHLPVQSG + IL+ M R +T  E+ +I++  
Sbjct: 224 GMMNPNHVLKFLDELIEAYQD-EKIYKFLHLPVQSGDNEILRRMGRTYTVEEFEEIVNAF 282

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R   PD+ +++D IVGFPGE+D+ FR T++LV ++   +    +YS R GT  +   +Q+
Sbjct: 283 RKKIPDLNLNTDIIVGFPGESDEAFRNTVELVKRVKPDKINVSRYSARPGTIAARW-KQL 341

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
              +  ER   L +         N A VG+ +EVL+   GK+ G + GR+   + ++L+S
Sbjct: 342 PGWLVKERSRELHRLRLAIAYEINRAYVGRTVEVLVHGPGKKGG-IEGRTFNYKDIILDS 400

Query: 443 KNHNIGDIIKVRITDVKISTLYGE 466
                G  ++V++     + L G+
Sbjct: 401 GEA--GGFVRVKVERATATYLLGK 422


>gi|301064131|ref|ZP_07204578.1| ribosomal protein S12 methylthiotransferase RimO [delta
           proteobacterium NaphS2]
 gi|300441751|gb|EFK06069.1| ribosomal protein S12 methylthiotransferase RimO [delta
           proteobacterium NaphS2]
          Length = 447

 Score =  354 bits (909), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 129/452 (28%), Positives = 211/452 (46%), Gaps = 17/452 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +  F  S GC  N  DS  M  +    GYE V+ ++ A  +V+NTC   ++A ++    +
Sbjct: 5   RSLFFISLGCAKNRVDSEHMLGILKRDGYEPVDEIEKAGCVVINTCGFLQEAVQEAIDTI 64

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
                 K    K G    +VVAGC  Q  G ++ +  P V+  +G    +R+ ++LE   
Sbjct: 65  LDAARFK----KRGTLKKLVVAGCFVQRYGYKLRKEIPEVDGWLGTGEIHRIADVLEGDS 120

Query: 145 FGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            G+ V +     V      L  +          TA+L I EGC   C++C++P  RG   
Sbjct: 121 EGESVPMHISRPVFPADHCLPRIR----TTPFYTAYLRIAEGCANRCSYCLIPKLRGPFR 176

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR++  ++ EA ++   GV EI L+ Q+  +  G+ + GE+   S LL  LS I+G   +
Sbjct: 177 SRAMDALLLEASEMASEGVREINLVAQDT-SRYGEDIYGERRIMS-LLEGLSLIEGFQWI 234

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R    HP  +++  +    + + + PYL LP Q     ILK+M R         ++  IR
Sbjct: 235 RLLYFHPARLTETFLDFIDENERIAPYLDLPFQHCHPAILKAMRRDPENNTPWDLMTMIR 294

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           + +  I I +  +VGFPGET++ F +  + V+   +     F +SP  GT    + E V 
Sbjct: 295 NRKQRIHIRTSLMVGFPGETEEMFESLCNFVEMARFDHLGVFVFSPEEGTSAFRLPETVA 354

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-----KGKLVGRSPWLQ-S 437
             +  ER   L K         N A VG+++ VLIE    E     +G+  G +P +   
Sbjct: 355 HEIALERQKMLMKLQAGISKRLNQAKVGEVLPVLIEGESTETDLLLEGRTAGMAPDVDSR 414

Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
           V++N      G+I+ V IT+     L G +++
Sbjct: 415 VLINDGEGRAGEIMPVLITEAHEYDLVGRILM 446


>gi|147902192|ref|NP_001084956.1| CDK5 regulatory subunit-associated protein 1-like 1 [Xenopus
           laevis]
 gi|82185344|sp|Q6NS26|CDKAL_XENLA RecName: Full=CDK5 regulatory subunit-associated protein 1-like 1
 gi|47122802|gb|AAH70521.1| MGC78779 protein [Xenopus laevis]
          Length = 556

 Score =  354 bits (909), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 115/457 (25%), Positives = 210/457 (45%), Gaps = 19/457 (4%)

Query: 15  SQIVDQCIVP--QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHI 72
            +      +P  Q+ +++++GC  N  D   M     + GY      + ADL +LN+C +
Sbjct: 48  EEPPADSTIPGTQKIWIRTWGCSHNNSDGEYMAGQLAAYGYSITEQPEKADLWLLNSCTV 107

Query: 73  REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT 132
           +  A +   + + + +              VVV+GCV QA+  +   +      ++G Q 
Sbjct: 108 KSPAEDHFRNSIKKAQEANKK---------VVVSGCVPQAQPRQDYMKG---LSIIGVQQ 155

Query: 133 YYRLPELLERARFGKRVVDTDYSVED-KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCT 191
             R+ E++E    G  V       ++ K    + +D    RK  +   ++I  GC   CT
Sbjct: 156 IDRVVEVVEETIKGHSVRLLGQKKDNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACT 215

Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLL 251
           +C   + RG   S  + ++VD A +    GVCEI L  ++  A  G+ +  +  T    L
Sbjct: 216 YCKTKHARGELASYPVEELVDRATQSFQEGVCEIWLTSEDTGA-YGRDIGTDLPTLLWKL 274

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
             +     ++RL  T           +    +   +  +LH+PVQS SD +L  M R + 
Sbjct: 275 VEVIPEGAMLRLGMTNPPYILEHLEEMAKILNHPRVYAFLHIPVQSASDSVLMDMKREYC 334

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
             ++++++D ++   P I I++D I GFPGETD+DF+ T+ LV++  +   F  ++ PR 
Sbjct: 335 IADFKRVVDFLKERVPGITIATDIICGFPGETDEDFKETLKLVEEYKFPSLFINQFYPRP 394

Query: 372 GTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR 431
           GTP + M EQV  +VK  R   L +          D  +GQ  +VL+ +   +    V  
Sbjct: 395 GTPAAKM-EQVLAHVKKRRTKELSQLF--HSYDPYDHKIGQKQQVLVTEESFDSQYYVAH 451

Query: 432 SPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           + + + V++      +G +++V+I +     + G+ V
Sbjct: 452 NRFYEQVLVPKDPDFMGKMVEVKIFEAGKHFMKGQPV 488


>gi|225375407|ref|ZP_03752628.1| hypothetical protein ROSEINA2194_01032 [Roseburia inulinivorans DSM
           16841]
 gi|225212743|gb|EEG95097.1| hypothetical protein ROSEINA2194_01032 [Roseburia inulinivorans DSM
           16841]
          Length = 438

 Score =  354 bits (909), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 122/437 (27%), Positives = 212/437 (48%), Gaps = 23/437 (5%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++  + + GC++N Y++  M+ +  + GYE V   + AD+ V+NTC +   A  K    L
Sbjct: 5   KKAALHNLGCKVNAYETEAMQQILENAGYEIVPFTEYADVYVVNTCSVTNMADRKSRQML 64

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            + +       K   D +VV AGC  Q +  E L     V++V+G    + L  +LE   
Sbjct: 65  HKAK-------KMNPDAIVVGAGCYVQTKEAEAL-LDDTVDIVIGNNKKHELLAMLEAYE 116

Query: 145 FGK----RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
                   V+D ++  ++  E                AF+ +Q+GC++FC++C++P+ RG
Sbjct: 117 NDHGKCGNVIDINHEKQEYEEMFL-----ERTAEHTRAFIKVQDGCNQFCSYCIIPFARG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
              SR+   V+ E ++L ++G  EI L G +++++     D        L+  +  + G+
Sbjct: 172 RVRSRNSEDVIREVKRLAEHGFREIVLTGIHLSSYGVDTGD----NLLHLIREVHNVDGI 227

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R  +  PR ++D    A   L  + P+ HL +QSG D  L+ MNRR+   EY +   
Sbjct: 228 ERIRLGSLEPRIVTDGFAAALAGLPKICPHFHLSLQSGCDATLQRMNRRYDTREYEEGCQ 287

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
            +R      AI++D IVGFPGET+++F  T + + +I + +   F+YS R GT  + M  
Sbjct: 288 ILRKYFDHPAITTDVIVGFPGETEEEFAVTKEYLKRIHFYEMHIFQYSKREGTKAAVMEH 347

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG--KLVGRSPWLQSV 438
           QV E VK ER   L    ++    F +  VG+ +  L+E+  + +G     G +     +
Sbjct: 348 QVPEPVKKERSNILLALEKKMSEEFREYYVGKQVTALMEEAYEFEGETYFTGYTKEYVKI 407

Query: 439 VLNSKNHNIGDIIKVRI 455
            + S        +K  I
Sbjct: 408 AVKSAADLSNQFVKGTI 424


>gi|313897359|ref|ZP_07830902.1| tRNA methylthiotransferase YqeV [Clostridium sp. HGF2]
 gi|312957729|gb|EFR39354.1| tRNA methylthiotransferase YqeV [Clostridium sp. HGF2]
          Length = 441

 Score =  354 bits (908), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 127/442 (28%), Positives = 225/442 (50%), Gaps = 19/442 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
            F + + GC++N Y+S   E     +GYE+V+  + AD+ ++NTC +   A  K    + 
Sbjct: 3   TFAIATLGCKVNTYESQGYESALLEKGYEQVSFKEKADVYIINTCAVTNTAGSKSRQKIH 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
               L         + L+ V GC AQ   E++ + +  +++++G     RL +++E    
Sbjct: 63  AAIAL-------NPEALIAVVGCYAQTASEQLEQDA-NIDILLGSDGKSRLADMIEEGLR 114

Query: 146 GKRVVDTDYSVE--DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            KR     + V   + FE L I    +  +    AFL IQ+GC++FC++C++P+ RG E 
Sbjct: 115 KKRPQKLIHDVRKVNVFEALPI----HRFEHQTRAFLKIQDGCNQFCSYCIIPFARGAER 170

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           S    +V+  AR L ++G  EI L G +     G G++        +   + EI  L R+
Sbjct: 171 SLPEDEVLAIARSLSESGHREIVLSGIHTG-RYGNGINS--SLCQLMKRMVKEIPKLQRI 227

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R ++    +++D L++     + +  +LH+PVQS +  +LK+MNR +T   + + +D IR
Sbjct: 228 RISSIEMNEITDELLEFIKGEEKIARHLHIPVQSANTTVLKNMNRPYTIAWFMERVDYIR 287

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           S+ PDI+ISSD I GFP E+++ F+ T+D + ++  +    F YS R  T  + M   ++
Sbjct: 288 SLIPDISISSDVITGFPQESEEQFQDTLDNIARMRLSFLHVFPYSRRDHTAAAQMSGHLE 347

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
             +K ER   L    ++   ++    +G+ + V+ EK  ++ GKL+G S     V   + 
Sbjct: 348 NKIKKERASRLANLSKQLYTAYKQNFIGKEVSVIFEK--EKDGKLIGHSSEYLEVAAAAP 405

Query: 444 NHNIGDIIKVRITDVKISTLYG 465
              +  +  VRIT +    L G
Sbjct: 406 LAWLHTMHTVRITALDGDLLVG 427


>gi|291190604|ref|NP_001167148.1| CDK5 regulatory subunit-associated protein 1-like 1 [Salmo salar]
 gi|223648364|gb|ACN10940.1| CDK5 regulatory subunit-associated protein 1-like 1 [Salmo salar]
          Length = 562

 Score =  354 bits (908), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 122/470 (25%), Positives = 213/470 (45%), Gaps = 33/470 (7%)

Query: 9   GVAHMVSQIVDQCIVP--QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIV 66
                   +    ++P  Q+ +++++GC  N  D   M     + GY+      +ADL +
Sbjct: 41  NTQQTTEVLHADSVIPGMQKIWMRTWGCSHNNSDGEYMAGQLAASGYKMTEDPAEADLWL 100

Query: 67  LNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNV 126
           LN+C ++  A +   + + + +              VVVAGCV QA+      +      
Sbjct: 101 LNSCTVKNPAEDHFRNSIKKAQEQDKK---------VVVAGCVPQAQPRMDYLKG---LS 148

Query: 127 VVGPQTYYRLPELLERARFGKRVVDTDYSVED-KFERLSIVDGGYNRKRGVTAFLTIQEG 185
           ++G Q   R+ E+++ A  G  V       ++ K    + +D    RK  +   ++I  G
Sbjct: 149 IIGVQQIDRVVEVVDEAVKGHSVRLLGQKKDNGKRLGGARLDLPKIRKNPLIEIISINTG 208

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C   CT+C   + RG   S  + ++V+ AR+    GVCEI L  ++  A  GK +  +  
Sbjct: 209 CLNACTYCKTKHARGDLASYPVEELVERARQSFQEGVCEIWLTSEDTGA-YGKDIGTDLP 267

Query: 246 TFSDLLYSLSEIK-------GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
           T   L   + EI        G+    Y   H  +MS  L     +   +  +LH+PVQS 
Sbjct: 268 TL--LWRLVEEIPEGAMLRLGMTNPPYILEHLEEMSKIL-----NHPRVYAFLHVPVQSA 320

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           SD +L  M R + A ++R++ D ++   P I I++D I GFPGETD DF+ T DLV +  
Sbjct: 321 SDSVLMDMKREYCADDFRRVADFLKDKVPGITIATDIICGFPGETDADFQETCDLVKEYR 380

Query: 359 YAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI 418
           +   F  ++ PR GTP + M +QV   +K +R   L         +     +G+  +VL+
Sbjct: 381 FPSLFINQFYPRPGTPAAKM-DQVPAQLKKQRTKELSALF--HSYNPYHHKIGETQQVLV 437

Query: 419 EKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            +   +    V  + + + V++  ++   G +I+V I +     L G  +
Sbjct: 438 TEESFDAQYYVAHNKYYEQVLVPKRSEFKGKMIEVEIFEAGKHFLKGRPL 487


>gi|327399314|ref|YP_004340183.1| 30S ribosomal protein S12 methylthiotransferase rimO [Hippea
           maritima DSM 10411]
 gi|327181943|gb|AEA34124.1| Ribosomal protein S12 methylthiotransferase rimO [Hippea maritima
           DSM 10411]
          Length = 429

 Score =  354 bits (908), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 120/449 (26%), Positives = 214/449 (47%), Gaps = 27/449 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + +++S GC  N  DS  M  +  ++G    +  + AD++++NTC   E A E+    + 
Sbjct: 2   KIYIESLGCPKNTADSEYMLGILKTKGCIIADRPEQADVLMVNTCGFIEPAKEESIDTIL 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +  LK    K      ++V GC+ +   +++    P V+  +G     R+ ++      
Sbjct: 62  ELAQLK----KNDPSKRLIVCGCLYERYRQQLKEELPEVDGFLGVNELDRISDV------ 111

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
              V+   ++++  +    I+            +L I +GC   CTFC +P  +G   SR
Sbjct: 112 ---VLGRSHNLKKPYIHRHII------GPKHIGYLKIADGCSNRCTFCAIPLIKGGFKSR 162

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            + ++V+EA  L D GV E+ +  Q+  A+        K    +LL  L EI+GL  +R 
Sbjct: 163 GIDELVEEAEVLADKGVRELYITAQDTTAYM--FEKNRKNALVELLKKLDEIEGLSWVRL 220

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
             ++P  ++D LI+       ++ Y+ +P Q  SDR+L  M R +T  +  ++ D++R  
Sbjct: 221 MYTYPSYVTDELIEFMSTARRIVRYIDMPFQHASDRVLDDMGRGYTVKDMEKLTDKLRLK 280

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
              +AI S FIVGFP E + DF   +D ++      A  FKY    GT        +DE 
Sbjct: 281 VKGVAIRSTFIVGFPTEEEKDFDRLLDFLEYNQLDWAGFFKYYHEEGTQAFKNFYDMDEE 340

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVV-L 440
            K +RL+  Q          N+  VG+++EV++++  +++G  +GRS      +  VV +
Sbjct: 341 TKDDRLIEAQSLALSITEGINEKFVGEVLEVIVDEPAEDEGYWIGRSYRSAYEIDGVVLI 400

Query: 441 NSKNHNIGDIIKVRITDVK-ISTLYGELV 468
            + N   GD +KV+I +V   + +   LV
Sbjct: 401 KADNLKPGDFVKVKIEEVSNQADVVASLV 429


>gi|56205139|emb|CAI19392.1| CDK5 regulatory subunit associated protein 1 [Homo sapiens]
 gi|119596728|gb|EAW76322.1| CDK5 regulatory subunit associated protein 1, isoform CRA_e [Homo
           sapiens]
          Length = 510

 Score =  354 bits (908), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 129/467 (27%), Positives = 218/467 (46%), Gaps = 74/467 (15%)

Query: 17  IVDQCI-VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREK 75
           ++D+ +   ++ ++++YGCQMNV D+     +    GY R +++ +AD+I+L TC IREK
Sbjct: 91  MMDELLGRQRKVYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCSIREK 150

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135
           A + +++ L +++ LK  R +    L + + GC+A+   EEIL R  +V+++ GP  Y  
Sbjct: 151 AEQTIWNRLHQLKALKTRRPRSRVPLRIGILGCMAERLKEEILNREKMVDILAGPDAYRD 210

Query: 136 LPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
           LP LL  A  G++  +   S+++ +  +  V          +AF++I  GCD  C++C+V
Sbjct: 211 LPRLLAVAESGQQAANVLLSLDETYADVMPVQTS---ASATSAFVSIMRGCDNMCSYCIV 267

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
           P+TRG E SR ++ +++E +KL +                              +L  + 
Sbjct: 268 PFTRGRERSRPIASILEEVKKLSEQ-----------------------------VLQLIH 298

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
           E   + +  +  +                           QSGS R+L++M R ++   Y
Sbjct: 299 ERDNICKQIHLPA---------------------------QSGSSRVLEAMRRGYSREAY 331

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
            +++  IR   P +++SSDFI GF GET++D   T+ L+ ++ Y   F F YS R  T  
Sbjct: 332 VELVHHIRESIPGVSLSSDFIAGFCGETEEDHVQTVSLLREVQYNMGFLFAYSMRQKTRA 391

Query: 376 S-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSP 433
              + + V E VK  RL  L    RE+    N   VG    VL+E   K     L GR+ 
Sbjct: 392 YHRLKDDVPEEVKLRRLEELITIFREEATKANQTSVGCTQLVLVEGLSKRSATDLCGRND 451

Query: 434 WLQSVVLNSKN------------HNIGDIIKVRITDVKISTLYGELV 468
               V+                    GD + V+IT     TL G ++
Sbjct: 452 GNLKVIFPDAEMEDVNNPGLRVRAQPGDYVLVKITSASSQTLRGHVL 498


>gi|4530613|gb|AAC38321.2| unknown [Ralstonia eutropha H16]
          Length = 505

 Score =  354 bits (908), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 117/476 (24%), Positives = 201/476 (42%), Gaps = 46/476 (9%)

Query: 14  VSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIR 73
            S+   Q     R    S GC   + DS ++     ++GY    + D ADL+V+NTC   
Sbjct: 50  PSESTTQKDHSPRVGFVSLGCPKALVDSEQIITQLRAEGYAISGTYDGADLVVVNTCGFI 109

Query: 74  EKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQ----AEGEEILRRSPIVNVVVG 129
           ++A ++    +G                 V+V GC+      A  + +    P V  V G
Sbjct: 110 DEAVQESLDAIGEALTENGK---------VIVTGCLGAKKDAAGHDIVSSVHPKVLAVTG 160

Query: 130 PQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKF 189
           P     + + +                 D F  L     G        A+L I EGC+  
Sbjct: 161 PHALGEVMQAVHTHLP---------KPHDPFTDLVPA-AGIKLTPKHYAYLKISEGCNHR 210

Query: 190 CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE 243
           C+FC++P  RG  +SR +++V+ EA  L   GV E+ ++ Q+ +A+      R    +G 
Sbjct: 211 CSFCIIPSMRGDLVSRPVAEVMLEAENLFKAGVKELLVISQDTSAYGVDVKYRTGFWNGR 270

Query: 244 --KCTFSDLLYSLSEI----KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQS 297
             K   ++L+ +L E+       VRL Y   +P       + + G    ++PYL +P+Q 
Sbjct: 271 PLKTRMTELVAALGELAAQYGAWVRLHYVYPYPHVDEIIPLMSQG---HVLPYLDVPLQH 327

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
               +LK M R   A +    I   R + P++ I S FI GFPGET+ +F+  +D + + 
Sbjct: 328 AHPDVLKRMKRPANAEKTMDRIRAWREICPELTIRSTFIAGFPGETEAEFQTLLDFIAEA 387

Query: 358 GYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVL 417
              +   F YSP  G   +++   + + V+ ER     +   E         VGQ + VL
Sbjct: 388 ELDRVGCFAYSPVEGATANDLPGALPDEVREERRARFMEVAEEVSARRLQRKVGQTLRVL 447

Query: 418 IEKHGKEK--GKLVGRSPWLQSVVLNSKNH------NIGDIIKVRITDVKISTLYG 465
           +++  ++   G+    +P +  +V  +           G+ + V+IT      L+G
Sbjct: 448 VDEVNQDGGIGRSSADAPEIDGLVYIAPPERHAQRYRAGEFVDVKITGADGHDLWG 503


>gi|293115612|ref|ZP_05792317.2| tRNA-I(6)A37 thiotransferase enzyme MiaB [Butyrivibrio crossotus
           DSM 2876]
 gi|292809090|gb|EFF68295.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Butyrivibrio crossotus
           DSM 2876]
          Length = 444

 Score =  354 bits (908), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 123/453 (27%), Positives = 230/453 (50%), Gaps = 21/453 (4%)

Query: 18  VDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDD-ADLIVLNTCHIREKA 76
           ++  I  ++  + S GC++N Y++  M+ M  S GYE V   ++ AD+ ++NTC +   A
Sbjct: 1   MEMEITMKKCALHSLGCKVNSYETQAMQKMMESAGYEIVPFGEEIADIYIINTCSVTNIA 60

Query: 77  AEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL 136
             K    + + + L         + +V  AGC  ++ G+ I      V++V+G      L
Sbjct: 61  DRKSRQMIHKAKKL-------NPEAVVAAAGCYVESAGDNI---DEDVDIVIGNNEKSHL 110

Query: 137 PELLERARFG-KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
            E+L        +    D      F+ L+I D      R   A++ IQ+GC++FC++C++
Sbjct: 111 IEILNEYFEHMDKEKSVDIGKATGFDELNI-DSPLEHTR---AYVKIQDGCNRFCSYCII 166

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
           PY RG   SR    V+ E +++  +G  E+ L G ++++  G           D++ +++
Sbjct: 167 PYVRGRIRSRKPDDVMAEIKRVAASGCKEVVLTGIHLSS-YGLDFKDSTVKLIDVIEAVN 225

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
            I+G+ R+R  +  P  +++  ++       + P+ HL +QSG D  LK MNRR+   EY
Sbjct: 226 RIEGIERIRLGSLEPLIVTEEFVRRLAKCKKICPHFHLSLQSGCDETLKRMNRRYNVDEY 285

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
            + ++ +R   PD A+++D IVGFPGET+++F  T   ++K+ + +   FKYS R GT  
Sbjct: 286 YKGVELLREYFPDAAVTTDVIVGFPGETEEEFNITKKYLEKVCFYEMHVFKYSRRKGTAA 345

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG--KEKGKLVGRSP 433
             M +Q+ EN+K+ER   L +        + +  +G+ ++VL+E++   + K  ++G + 
Sbjct: 346 DKMPDQIPENIKSERSTELLELNEILSNGYREKYIGKKVKVLLEENHIIENKKYIIGFTD 405

Query: 434 WLQSVVLNSKNHNI--GDIIKVRITDVKISTLY 464
               V L +    +    I+ VR+  +    + 
Sbjct: 406 TYVRVALENPEEKLYTNQIVNVRVKKLFEKDMV 438


>gi|55274301|gb|AAV49043.1| MiaB [Azospirillum lipoferum]
          Length = 422

 Score =  354 bits (908), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 133/440 (30%), Positives = 219/440 (49%), Gaps = 31/440 (7%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           + ++GC++N Y+S  M +   S G +        D++++NTC +  +A  +    + ++R
Sbjct: 14  IVTFGCRLNTYESEVMRNHVRSAGLD--------DVVIVNTCAVTSEAERQARQTIRKLR 65

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
                  +E  D  +VV GC AQ + +      P V+ V+G Q     PE        K 
Sbjct: 66  -------RERPDARIVVTGCAAQIDPQRFAA-MPEVDQVLGNQEKL-QPESWGLPPAEKV 116

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           +V+   SV++    L  + G  +R R   AF+ +Q+GCD  CTFC++PY RG   S  + 
Sbjct: 117 LVNDIMSVKETAGHL--IGGFEDRAR---AFVQVQQGCDHRCTFCIIPYGRGPSRSVPIG 171

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
            +V++ + L+  G  E+ L G ++ +  G  L G       +   L+ +  L RLR ++ 
Sbjct: 172 GIVEQVQALVKAGYNEVVLSGVDITS-YGPDLPGSPSLGQMVRRLLALVPELPRLRLSSI 230

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
              +M D L +   +   LMP+LHL +Q+G D +LK M RRH   +      R+RS+RPD
Sbjct: 231 DCIEMDDDLWRLIENEPRLMPHLHLSLQAGDDMVLKRMKRRHGRADSIAFCKRVRSIRPD 290

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           +   +DFI GFP ET++ F+ TM LV++ G      F YSPR GTP + M  QVD  V+ 
Sbjct: 291 VVFGADFIAGFPTETEEMFQNTMRLVEECGLTWLHVFPYSPRPGTPAARMP-QVDGAVRK 349

Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIG 448
           ER   ++   +  +     + VG+   VL+EK        +GR+    ++ L  +    G
Sbjct: 350 ERAARMRAVGKAAEARTLASLVGRTATVLVEKDD------LGRTEHFAAIRL-GRTFAPG 402

Query: 449 DIIKVRITDVKISTLYGELV 468
            ++   IT ++   L G  +
Sbjct: 403 SLVPAAITGIESGVLTGTPL 422


>gi|218283870|ref|ZP_03489756.1| hypothetical protein EUBIFOR_02352 [Eubacterium biforme DSM 3989]
 gi|218215533|gb|EEC89071.1| hypothetical protein EUBIFOR_02352 [Eubacterium biforme DSM 3989]
          Length = 432

 Score =  354 bits (908), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 122/450 (27%), Positives = 221/450 (49%), Gaps = 28/450 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC  N+ DS ++  M    G+E V +  DA  I++NTC   E A E+  + + 
Sbjct: 2   KIGFVSLGCCKNLVDSEQIMGMIKRGGHEIVANPKDAQAIIVNTCGFIESAKEESINTIF 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           ++   K   ++      ++V GC+AQ   + +    P ++ V+  + Y  L   L++   
Sbjct: 62  KMAQYKERNLE-----KLIVCGCLAQRYTDTLREEIPEIDAVIPIREYDTLASQLQKILG 116

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
              ++D    V                     A++ I +GC   C +C +P  RG + SR
Sbjct: 117 SDTLLDKAERVI--------------SGNPWQAYVKISDGCSNRCAYCAIPLIRGDQKSR 162

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           ++  +++E   L   GV E+TL+ Q+     G    GE     +LL  +S+++ L  +R 
Sbjct: 163 TIEDIMEEVNHLSSIGVKELTLIAQDTT-KYGLDNYGELM-LPELLRQVSKVEELHWIRV 220

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
              +P ++ D +++A  + + ++PY  +P+Q  ++R+LK MNRR    +  +++D+I ++
Sbjct: 221 LYMYPDEIVDDVLQAMSESEKIVPYFDIPMQHANNRLLKLMNRRGPKEDVLKVVDKIHTM 280

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P+  + +  IVGFP ET+++F   +D + +I + +  +F YS    TP  +M  Q+DE 
Sbjct: 281 FPNATLRTTMIVGFPTETEEEFEELVDFIKEIKWDRMGAFTYSKEEDTPAYDMDGQIDEE 340

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS-----PWLQS-VV 439
           V+ +RL  L     E     N   +G++IEVL+E+      +  GRS       +   V+
Sbjct: 341 VQNDRLARLMAVQEEISKEKNQEKIGKVIEVLVEEKEGLVDRYRGRSAADAPDEVDGQVI 400

Query: 440 LNSKNHN-IGDIIKVRITDVKISTLYGELV 468
             S+    +G  +KV+ITD K   +YG  V
Sbjct: 401 FTSEEPLELGTFVKVKITDAKSYDVYGTCV 430


>gi|326800449|ref|YP_004318268.1| MiaB-like tRNA modifying enzyme [Sphingobacterium sp. 21]
 gi|326551213|gb|ADZ79598.1| MiaB-like tRNA modifying enzyme [Sphingobacterium sp. 21]
          Length = 439

 Score =  354 bits (908), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 120/433 (27%), Positives = 209/433 (48%), Gaps = 14/433 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + +R    + GC++N  ++  +  +F   GY+ V   + AD+ V+NTC + + A +K   
Sbjct: 1   MDKRVAFYTLGCKLNFSETSSIGRIFQDAGYQTVPFNERADVYVINTCSVTDNADKKCRK 60

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +          +K      + + GC AQ +  EI    P V++V+G    + + E +  
Sbjct: 61  VVKEA-------LKYSPQAYITIVGCYAQLKPREIA-EIPGVDMVLGAAEKFNIIEHIND 112

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
               K+ +  +  +E+    +      ++       FL +Q+GCD  CTFC +P  RG  
Sbjct: 113 LTKQKKAIIHNAPIEETNVFVP----AFSFGDRTRTFLKVQDGCDYSCTFCTIPLARGAS 168

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            S ++  +V +A+ +  +GV EI L G N+  + G      +  F DL+ +L  + G+ R
Sbjct: 169 RSGTIESLVKQAKDIAASGVKEIVLTGVNIGDF-GMRQGQREDRFLDLVKALDAVDGIDR 227

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
            R ++  P  +S+ +I         +P+ H+P+QSGS++IL  M RR+    Y + + RI
Sbjct: 228 FRISSIEPNLLSNEIIDFVASSKRFVPHFHMPLQSGSNKILGLMRRRYKRELYAERVKRI 287

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           +S+ PD  I  D IVGFPGET +DF  T + ++ +  +    F YS R  T  S M   V
Sbjct: 288 KSLMPDCCIGVDVIVGFPGETREDFLQTYEFLNDLDISYLHVFTYSERENTIASQMEGAV 347

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
             + +++R   L     +++ +F  + +G  +EVL E   KE G + G S     V    
Sbjct: 348 PGSARSDRSKMLHILSEKKRRAFYVSQLGNEMEVLFESDVKE-GYMHGFSKNYVKVRAKY 406

Query: 443 KNHNIGDIIKVRI 455
               + +I  VR+
Sbjct: 407 DPLLVNEIKTVRL 419


>gi|114331380|ref|YP_747602.1| MiaB-like tRNA modifying enzyme YliG [Nitrosomonas eutropha C91]
 gi|122313794|sp|Q0AG95|RIMO_NITEC RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|114308394|gb|ABI59637.1| SSU ribosomal protein S12P methylthiotransferase [Nitrosomonas
           eutropha C91]
          Length = 445

 Score =  354 bits (908), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 126/464 (27%), Positives = 202/464 (43%), Gaps = 38/464 (8%)

Query: 14  VSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIR 73
            +  +    +P+  FV S GC     DS R+     ++GY    +  DADL+V+NTC   
Sbjct: 3   AASSLHPPAIPRVGFV-SLGCPKATVDSERILTCLRAEGYLISPNYADADLVVVNTCGFI 61

Query: 74  EKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTY 133
           + A  +    +G                 V+V GC+  A+ + I +  P V  V GPQ  
Sbjct: 62  DSAVAESLETIGEALTENGK---------VIVTGCLG-AKEDVIRQAHPSVLAVTGPQAT 111

Query: 134 YRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC 193
             +   +                 D +  L +   G        A+L I EGC+  CTFC
Sbjct: 112 EEVMAAIHHHLP---------KPHDPYLDL-VPPQGIKLTPKHYAYLKISEGCNHHCTFC 161

Query: 194 VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE---------K 244
           ++P  RG  +SR +  V+ EA+ L++ GV E+ ++ Q+ +A  G  +            +
Sbjct: 162 IIPSMRGDLVSRPVGGVLQEAQSLVEAGVKELLIISQDTSA-YGVDIKYRTGFWQGRPVR 220

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304
              ++L  +L E    VRL Y   +P       + A G    L+PYL +P Q  + RILK
Sbjct: 221 TRITELANALGEFGIWVRLHYVYPYPHVDELIPLMAEG---KLLPYLDIPFQHANKRILK 277

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
            M R   +      I + R   PDIA+ S FIVGFPGET+ +F   +  +++    +  +
Sbjct: 278 LMKRPANSENVLVRIQQWRKTCPDIALRSTFIVGFPGETEAEFEELLAFLEEAQLDRVGA 337

Query: 365 FKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE 424
           F YSP  G   + + + V   ++ ERL  L ++             GQ + VL++   +E
Sbjct: 338 FTYSPVKGAAANVLPDHVPPEIQQERLERLMQQQEIISKQRLAVKKGQQLRVLVDTVDEE 397

Query: 425 K--GKLVGRSPWLQSVVL--NSKNHNIGDIIKVRITDVKISTLY 464
               +    +P +  VV   ++     GD   VR+TD  I  L+
Sbjct: 398 GAIARSYADAPEIDGVVYINDASTLKPGDWADVRVTDTDIHDLW 441


>gi|34540013|ref|NP_904492.1| hypothetical protein PG0150 [Porphyromonas gingivalis W83]
 gi|81417873|sp|Q7MXM3|RIMO_PORGI RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|34396324|gb|AAQ65391.1| conserved hypothetical protein TIGR01125 [Porphyromonas gingivalis
           W83]
          Length = 434

 Score =  354 bits (908), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 120/454 (26%), Positives = 203/454 (44%), Gaps = 36/454 (7%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDD--ADLIVLNTCHIREKAAEKVYSF 83
           R  V + GC  N+ DS  +   F S GY   +       +++V+NTC     A E+  + 
Sbjct: 5   RVDVITLGCSKNLVDSEVLMRQFLSNGYTVHHDPASVCGEIVVVNTCGFIGDAQEESVNT 64

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +  +   K    K G    + V GC+++   E++ +  P V+   G   + +L   L ++
Sbjct: 65  ILEMVEAK----KAGRIGSLYVMGCLSERFREDLKKEIPEVDAYYGKFDWKQLISHLGKS 120

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            + +                   +          A+L I EGCD+ C++C +P   G   
Sbjct: 121 YYAEA-----------------ENRRKLTTPRHYAYLKISEGCDRSCSYCAIPIITGRHR 163

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR +  +V+E R L+ +G  E  L+ Q++  + G  L G     ++L   LS+IKG+  L
Sbjct: 164 SRPMEDLVEEVRMLVKHGTREFQLIAQDLT-FYGLDLYGA-NRLAELTARLSDIKGVEWL 221

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R   ++P      L+    +   +  YL + +Q  SD +L  M RR T  E  ++I+RIR
Sbjct: 222 RLHYAYPAQFPLDLLPVMRERPNVCKYLDMALQHISDPMLGRMRRRITKAETYELIERIR 281

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP-GSNMLEQV 382
           +  P I + +  + G PGET+ DF   +  V  I + +  +F YS   GT    N  + +
Sbjct: 282 TEVPGIHLRTTLMTGHPGETERDFEELLQFVRDIRFERLGAFTYSHESGTYCDKNYQDDI 341

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSV 438
            E+VK ERL  L         + N+A +G  + V+I++   E G  VGR+    P +   
Sbjct: 342 PESVKQERLGELMAVQERISAAHNEAKIGSRLHVVIDRA--EDGFYVGRTEYDSPEVDPE 399

Query: 439 V----LNSKNHNIGDIIKVRITDVKISTLYGELV 468
           V    ++ +  N G      +T  +   LY  +V
Sbjct: 400 VLIPFVSGQELNPGRFYMAEVTGAEPFDLYARIV 433


>gi|187250673|ref|YP_001875155.1| MiaB family RNA modification enzyme [Elusimicrobium minutum Pei191]
 gi|238065353|sp|B2KB59|RIMO_ELUMP RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|186970833|gb|ACC97818.1| RNA modification enzyme, MiaB family [Elusimicrobium minutum
           Pei191]
          Length = 430

 Score =  353 bits (907), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 127/449 (28%), Positives = 215/449 (47%), Gaps = 27/449 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + F  S GC  N+ D+  M  +   + +  V    +AD I++NTC   + A E+    + 
Sbjct: 3   KIFTISLGCSKNLTDTEEMLGILNHKKHYLVADESEADTILINTCAFIKPAREEADREIK 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R   LK      G    ++VAGC+ Q EG+ +  + P+V+  +G +   ++  +++R + 
Sbjct: 63  RASKLKAQ----GKIEKLIVAGCLTQKEGKSLPSKYPLVDAFIGLKGIEKIDNVIKRPK- 117

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                   +S     + +   D         +A+L + +GC+  C +C +P  RG   S+
Sbjct: 118 --------HSFCPAPDYIKAPDFKLQLTAPHSAYLKVADGCNNRCAYCTIPAIRGPFRSK 169

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           S+  +V EA+ +  NGV EI+L+ Q+  A  G+ + G K +   LL  L +IKG+   R 
Sbjct: 170 SMEDIVAEAKAMEKNGVKEISLIAQDTTA-YGQDIFG-KPSLVKLLKKLVKIKGIEWFRI 227

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
             ++P  ++  L+        +  YL +P+Q  S  +LK+MNRR T  E R  I  IR +
Sbjct: 228 MYAYPETVTKDLLDFIACEPKICRYLDMPLQHISAPVLKAMNRRSTEDEVRAKIKLIRQI 287

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P +++ ++FI GFPGET +DF      + +  +     F YS   GTP + M  QV E 
Sbjct: 288 VPGMSLRTNFIAGFPGETAEDFEKLKKFIAEAKFNNVGVFAYSKEDGTPAAVMKRQVAEK 347

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQS-VVL 440
           +K +R+  L         S N    G+ ++VL++          GR    SP +   V +
Sbjct: 348 IKKQRVEELVSAQSRVIDSINRKLKGKTVKVLLD------NLFCGRSESDSPDIDGRVEV 401

Query: 441 NS-KNHNIGDIIKVRITDVKISTLYGELV 468
              K +  GD +KV+IT  K     G+++
Sbjct: 402 KGNKKYKAGDFVKVKITSAKGYNRTGKII 430


>gi|90424119|ref|YP_532489.1| hypothetical protein RPC_2620 [Rhodopseudomonas palustris BisB18]
 gi|123275201|sp|Q214L6|RIMO_RHOPB RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|90106133|gb|ABD88170.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB18]
          Length = 441

 Score =  353 bits (907), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 128/463 (27%), Positives = 208/463 (44%), Gaps = 38/463 (8%)

Query: 18  VDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA 77
           ++Q   P+  FV S GC   + DS R+     ++GYE     D ADL+++NTC   + A 
Sbjct: 1   MNQAAAPKVSFV-SLGCPKALVDSERIITRLRAEGYELARKHDGADLVIVNTCGFLDSAK 59

Query: 78  EKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLP 137
           ++    +G                 V+V GC+  AE E+I    P +  + GPQ Y  + 
Sbjct: 60  KESLGAIGEAMAANGK---------VIVTGCMG-AEPEQIEAAYPNLLSITGPQQYESVL 109

Query: 138 ELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197
           + + RA                     +   G        A+L I EGC+  C+FC++P 
Sbjct: 110 DAVHRAL----------PPLHNPHLDLVPAQGIKLTPRHYAYLKISEGCNNRCSFCIIPK 159

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE---------KCTFS 248
            RG  +SR   +V+ EA KL+  GV E+ ++ Q+ +A  G  L            +  F 
Sbjct: 160 LRGDLVSRPAGEVLREAEKLVKAGVKELLVVSQDTSA-YGVDLKYAESPWQDRNVRARFY 218

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
           DL   L E+   VRL+Y   +P       + A G    ++PYL +P Q  S  +LK M R
Sbjct: 219 DLAKELGELGAWVRLQYVYPYPHVDEVIGLMAQG---KVLPYLDIPFQHASPEVLKQMKR 275

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
                +    I + R + P++ + S FIVGFPGETD DF   +D +++    +  +FKY 
Sbjct: 276 PAAQDKTLARIKQWREICPELTLRSTFIVGFPGETDSDFAYLLDWLEQAEIDRVGAFKYE 335

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK--EKG 426
              G   + + +QV + VK ER   L  + ++         VG   +V+I++ G    KG
Sbjct: 336 AVRGATSNALPDQVSDEVKTERWNALMARQQKISARRLKRKVGTRQQVIIDEVGPTVSKG 395

Query: 427 KLVGRSPWLQSVVL--NSKNHNIGDIIKVRITDVKISTLYGEL 467
           +    +P +   V   + +   +G+I+  +I       L+G +
Sbjct: 396 RSKADAPQIDGSVYLTSRRPLRVGEIVTAKIERADAYDLHGSV 438


>gi|262381912|ref|ZP_06075050.1| MiaB-like tRNA modifying enzyme YliG [Bacteroides sp. 2_1_33B]
 gi|262297089|gb|EEY85019.1| MiaB-like tRNA modifying enzyme YliG [Bacteroides sp. 2_1_33B]
          Length = 432

 Score =  353 bits (907), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 111/456 (24%), Positives = 211/456 (46%), Gaps = 34/456 (7%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDD--ADLIVLNTCHIREKAAEK 79
           +   +  + + GC  N+ DS ++   F + GY   +       +++V+NTC     A E+
Sbjct: 1   MRKNKVDIITLGCSKNLVDSEQLMRQFVANGYTVEHDPHKINGEIVVVNTCGFIGDAQEE 60

Query: 80  VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL 139
             + +  +   K      G    + V GC+++   +++ +  P V+   G   +  L   
Sbjct: 61  SINMILELGEQKQK----GRIGKLFVMGCLSERFLKDLEKELPEVDRFYGKFNWKELISD 116

Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           L +           Y  E   ER+      Y       A++ I EGC++ C++C +P   
Sbjct: 117 LGK----------SYHQELATERVLTTPRHY-------AYVKIGEGCNRTCSYCSIPIIT 159

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G   SR + ++VDE R L+  GV E  ++ Q++  + G     ++    +L+  +S+I G
Sbjct: 160 GAYQSRPMDEIVDEVRGLVAQGVKEFQMIAQDLT-FYGLDRY-KRMALPELVERVSDIPG 217

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           +  +R    +P      L+    + D +  Y+ + +Q  SD +LK M R  T  E  +++
Sbjct: 218 VEWIRLHYGYPSHFPYDLLPVMRERDNVCKYMDIALQHISDPMLKMMRRNITKAETNELL 277

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NM 378
           +R+R   P I + +  +VG PGET+ DF   +  V  I + +  +F YS   GT    + 
Sbjct: 278 ERMRREVPGIHLRTTLMVGHPGETEHDFEELIRFVKDIRFERMGAFAYSHEEGTYAYQHY 337

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PW 434
            +++ + VK +RL  L +         N + VGQ   V++++  +E+   VGR+    P 
Sbjct: 338 KDEIPQEVKQDRLDYLMRVQEGISADVNASKVGQTFRVIVDR--EEEDFYVGRTQYDSPE 395

Query: 435 LQSVVLNSKN--HNIGDIIKVRITDVKISTLYGELV 468
           +   +L SK+   + G   +V++ D +   LYG+++
Sbjct: 396 VDPEILISKDTPLSPGSFYQVKVIDAQAFDLYGKVL 431


>gi|62185140|ref|YP_219925.1| hypothetical protein CAB512 [Chlamydophila abortus S26/3]
 gi|81312696|sp|Q5L5W7|RIMO_CHLAB RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|62148207|emb|CAH63964.1| conserved hypothetical protein [Chlamydophila abortus S26/3]
          Length = 460

 Score =  353 bits (907), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 119/453 (26%), Positives = 211/453 (46%), Gaps = 21/453 (4%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
             +    S GC  N+ DS  M  +    GYE    + +AD ++LNTC   + A ++   +
Sbjct: 15  KNKIHFISLGCSRNLVDSEVMLGILLKAGYEATELLREADYLILNTCGFLKAARDESTDY 74

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           L RI N K    K      +++ GC+     EE+    P V+ V+G      +   +E  
Sbjct: 75  LQRIINEKKETAK------IILTGCMVSKHKEELKPWLPYVHYVLGSGDVEHILSAIESK 128

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             G+++    Y    +  R       Y       A+L I EGC K C FC++P  +G   
Sbjct: 129 ESGEKLSSKSYLEMGEVPRKLSTPKHY-------AYLKIAEGCRKRCAFCIIPTIKGGLR 181

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           S+ L QV+ E R L+  GV EI L+ Q++  +        K     +L  + +  G   +
Sbjct: 182 SKPLEQVMKEFRLLLKMGVKEIILIAQDLGDYGKDLSKDRKSCLYSVLREMLKEPGNYWI 241

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R    +P ++ D LI        L+PY+ +P+Q  ++R+LK M R  +  +   ++ ++R
Sbjct: 242 RMLYLYPDEVDDTLIDLMEKDQRLLPYVDIPLQHINNRVLKKMLRTTSREQILDLLTKLR 301

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           +  P I I S  IVGFPGET+++F+  ++ V +        F YS   G+  + M +Q+ 
Sbjct: 302 TRIPHIYIRSSLIVGFPGETEEEFQELVNFVGEGWIDNLGIFSYSQEKGSLAAEMPDQIP 361

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-----GKLVGRSPWLQSV 438
           ++VK++RL  L +  ++     N   VG+I+E +I+ +  +       +  G++P +   
Sbjct: 362 QSVKSKRLKILSQTQKKNVEKHNKQFVGKIVEAVIDGYHPDSEFLLTARFYGQAPEVDPC 421

Query: 439 VLNSKNHNI---GDIIKVRITDVKISTLYGELV 468
           ++ ++   +   G+   + IT      L G +V
Sbjct: 422 IIVNEARLVSGFGERYLIEITGYVGYDLVGRVV 454


>gi|291529131|emb|CBK94717.1| MiaB-like tRNA modifying enzyme [Eubacterium rectale M104/1]
          Length = 434

 Score =  353 bits (907), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 131/435 (30%), Positives = 214/435 (49%), Gaps = 18/435 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++  + + GC++N Y++  M+ +    GYE V     AD+ V+NTC +   A  K    L
Sbjct: 2   KKAALHNLGCKVNAYETEAMQHLLEEAGYEIVPFTQKADVYVINTCSVTNMADRKSRQML 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA- 143
            + +       K   D +VV AGC  Q   +E+L     V++V+G    + L  LLE   
Sbjct: 62  HKAK-------KNNPDSIVVAAGCYVQTSEKEVLNDLS-VDIVIGNDRKHDLVRLLEEYS 113

Query: 144 -RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
                  VD     +  FE L I       K    AF+ +Q+GC++FC++C++PY RG  
Sbjct: 114 LDSVNDTVDDINDGKHDFEELFIDQ----TKEHTRAFIKVQDGCNQFCSYCIIPYARGRV 169

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR    V+ E  +L  NG  E+ L G ++++  G   + E     +L+ +++ +KG+ R
Sbjct: 170 RSRRFENVIAEVERLAANGFKEVVLTGIHLSS-YGVDFE-EATGLLELIQAVNAVKGIER 227

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R  +  P+ +++        LD + P+ HL +QSG D  LK MNR++T  EY +  + +
Sbjct: 228 IRLGSLEPKIVTEHFASELSKLDKICPHFHLSLQSGCDATLKRMNRKYTTKEYERGCELL 287

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R      AI++D IVGFPGET+++F  T   ++ I + +   FKYS R GT  + M +Q+
Sbjct: 288 RKYFVHPAITTDVIVGFPGETEEEFEQTKAYLEHIHFYEMHIFKYSKRKGTRAAVMPDQI 347

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG--KEKGKLVGRSPWLQSVVL 440
           DE +KA R   L     +    F    +G+  E L E+     +K   VG +     V  
Sbjct: 348 DEQIKAARSEKLIALGHDMSKEFRKFYIGKNEEALFEEKAVIGDKEYFVGYTKEYVKVAK 407

Query: 441 NSKNHNIGDIIKVRI 455
            +  +    I+  RI
Sbjct: 408 ETAENLENQIVSGRI 422


>gi|238924259|ref|YP_002937775.1| MiaB-like tRNA modifying enzyme [Eubacterium rectale ATCC 33656]
 gi|238875934|gb|ACR75641.1| MiaB-like tRNA modifying enzyme [Eubacterium rectale ATCC 33656]
          Length = 434

 Score =  353 bits (907), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 131/435 (30%), Positives = 214/435 (49%), Gaps = 18/435 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++  + + GC++N Y++  M+ +    GYE V     AD+ V+NTC +   A  K    L
Sbjct: 2   KKAALHNLGCKVNAYETEAMQHLLEEAGYEIVPFTQKADVYVINTCSVTNMADRKSRQML 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA- 143
            + +       K   D +VV AGC  Q   +E+L     V++V+G    + L  LLE   
Sbjct: 62  HKAK-------KNNPDSIVVAAGCYVQTSEKEVLNDLS-VDIVIGNDRKHDLVRLLEEYS 113

Query: 144 -RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
                  VD     +  FE L I       K    AF+ +Q+GC++FC++C++PY RG  
Sbjct: 114 LDSVNDTVDDINDGKHDFEELFIDQ----TKEHTRAFIKVQDGCNQFCSYCIIPYARGRV 169

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR    V+ E  +L  NG  E+ L G ++++  G   + E     +L+ +++ +KG+ R
Sbjct: 170 RSRRFENVIAEVERLAANGFKEVVLTGIHLSS-YGVDFE-EAVGLLELIQAVNAVKGIER 227

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R  +  P+ +++        LD + P+ HL +QSG D  LK MNR++T  EY +  + +
Sbjct: 228 IRLGSLEPKIVTEHFASELSKLDKICPHFHLSLQSGCDATLKRMNRKYTTKEYERGCELL 287

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R      AI++D IVGFPGET+++F  T   ++ I + +   FKYS R GT  + M +Q+
Sbjct: 288 RKYFVHPAITTDVIVGFPGETEEEFEQTKAYLEHIHFYEMHIFKYSKRKGTRAAVMPDQI 347

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG--KEKGKLVGRSPWLQSVVL 440
           DE +KA R   L     +    F    +G+  E L E+     +K   VG +     V  
Sbjct: 348 DEQIKAARSEKLIALGHDMSKEFRKFYIGKNEEALFEEKAVIGDKEYFVGYTKEYVKVAK 407

Query: 441 NSKNHNIGDIIKVRI 455
            +  +    I+  RI
Sbjct: 408 ETDENLENQIVSGRI 422


>gi|238762863|ref|ZP_04623831.1| hypothetical protein ykris0001_31730 [Yersinia kristensenii ATCC
           33638]
 gi|238698874|gb|EEP91623.1| hypothetical protein ykris0001_31730 [Yersinia kristensenii ATCC
           33638]
          Length = 361

 Score =  353 bits (907), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 147/321 (45%), Positives = 202/321 (62%), Gaps = 6/321 (1%)

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           VVD  +   +KF+RL        R  G TAF++I EGC+K+CTFCVVPYTRG E+SR   
Sbjct: 12  VVDISFPEIEKFDRLP-----EPRADGPTAFVSIMEGCNKYCTFCVVPYTRGEEVSRPSD 66

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
            ++ E  +L   GV E+ LLGQNVNA+RG   DGE C+F++LL  ++ I G+ R+R+TTS
Sbjct: 67  DILFEIAQLAAQGVREVNLLGQNVNAYRGATYDGEICSFAELLRLVAAIDGIDRVRFTTS 126

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
           HP + +D +I  + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II ++R  RPD
Sbjct: 127 HPIEFTDDIIDVYRDTPELVSFLHLPVQSGSDRILTMMKRAHTALEYKAIIRKLRQARPD 186

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           I ISSDFI+GFPGET  DF  TM LV  I +  ++SF YS R GTP +++ + V E  K 
Sbjct: 187 IQISSDFIIGFPGETQQDFEQTMKLVADIRFDTSYSFIYSSRPGTPAADLPDNVSEEEKK 246

Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNSKNHNI 447
           +RL  LQ+++ +Q +  +   VG +  +L+E   ++   +L GR+   + V        I
Sbjct: 247 QRLHILQERITQQAMEISREMVGTVQRILVEGTSRKNLMELAGRTENNRVVNFEGTPDMI 306

Query: 448 GDIIKVRITDVKISTLYGELV 468
           G  + V I DV  S+L G LV
Sbjct: 307 GKFVDVEIVDVYASSLRGILV 327


>gi|325295705|ref|YP_004282219.1| ribosomal protein S12 methylthiotransferase rimO
           [Desulfurobacterium thermolithotrophum DSM 11699]
 gi|325066153|gb|ADY74160.1| Ribosomal protein S12 methylthiotransferase rimO
           [Desulfurobacterium thermolithotrophum DSM 11699]
          Length = 432

 Score =  353 bits (907), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 122/451 (27%), Positives = 213/451 (47%), Gaps = 29/451 (6%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYER-VNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++  V S GC  N+ D+  +  +  + G    V+++ DAD+I++NTC   + A E+    
Sbjct: 2   KKIAVISLGCPKNLVDTENIVGLLKATGNVVFVDNLKDADIIIVNTCGFIQPAKEESIDE 61

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +           KE  +  VVVAGC+ Q   EE+ R  P V+V +G     +    +E+ 
Sbjct: 62  ILNAIE----EKKESPEKKVVVAGCLYQRYKEELKRELPEVDVFIGVDEIEKS---VEKI 114

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
              K  V   Y + +                   A+L I EGC   CT+C +P  RG   
Sbjct: 115 LNQKIAVQKPYLLREIL------------TPPHIAYLKISEGCSNACTYCAIPLIRGKLK 162

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR + + V+EA++L D GV E+ ++ Q+  A+      GEK     LL  L +I+G+  +
Sbjct: 163 SRPIEEAVEEAKRLADKGVKELYVIAQDTTAYLYD--KGEKEGLVKLLEKLEKIEGIDWI 220

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R   ++P  +SD LI    + + ++ Y  +P Q  ++++L SM R++T  +   +ID++R
Sbjct: 221 RLMYTYPSHISDSLIDFVANSEKVLKYFDVPFQHINNKVLASMGRKYTRKDAEVLIDKLR 280

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           +  PDI + + FI+GFP E + +F   +  +  I +  A  FKYS    T    + + + 
Sbjct: 281 NRIPDITLRTTFIIGFPTEGEREFEELLSFIKDIEFDWAGFFKYSREEDTAAYKLGD-IP 339

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRS----PWLQSV 438
           + VK  RL  +++             +G+  +++++   +E  G +  RS      +  +
Sbjct: 340 DEVKESRLNLIEEVQYSIYEKKQMQLLGKEFDLIVDSPSEEMPGFVEARSYKNAYEIDGI 399

Query: 439 VLNSKNHNIGDIIKVRITD-VKISTLYGELV 468
           V    N   G+I+K  IT       L GE +
Sbjct: 400 VYLKGNFKPGEIVKAEITALASSVDLIGEPI 430


>gi|160882776|ref|ZP_02063779.1| hypothetical protein BACOVA_00737 [Bacteroides ovatus ATCC 8483]
 gi|156111800|gb|EDO13545.1| hypothetical protein BACOVA_00737 [Bacteroides ovatus ATCC 8483]
          Length = 436

 Score =  353 bits (907), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 107/454 (23%), Positives = 201/454 (44%), Gaps = 35/454 (7%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEKVYS 82
           +   + + GC  N+ DS ++       GY   +  +    ++ V+NTC     A E+  +
Sbjct: 4   KTIDIITLGCSKNLVDSEQLMRQLEEVGYSVTHDTENPQGEIAVINTCGFIGDAKEESIN 63

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +      K      G    + V GC+++   +E+    P V+   G   +  L + L +
Sbjct: 64  MILEFAERKEE----GDLKKLFVMGCLSERYLKELAVEIPQVDKFYGKFNWKELLQDLGK 119

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
                      Y  E   ER       Y       A+L I EGCD+ C++C +P   G  
Sbjct: 120 V----------YHDELYIERTLTTPQHY-------AYLKISEGCDRKCSYCAIPIITGHH 162

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           IS+ + +++DE R L+  GV E  ++ Q +  + G     +K    +L+  +S+I G+  
Sbjct: 163 ISKPIEEILDEVRYLVSQGVKEFQVIAQELT-YYGIDRY-KKQMLPELIERISDIPGVEW 220

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R   ++P      L +   + D +  Y+ + +Q  SD +LK M R+ +  +  Q+I++ 
Sbjct: 221 IRLHYAYPAHFPTDLFRVMRERDNVCKYMDIALQHISDNMLKLMRRQVSKEDTYQLIEQF 280

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN-MLEQ 381
           R   P I + +  +VG PGET++DF    + V K+ + +  +F YS   GT  +    + 
Sbjct: 281 RREVPGIHLRTTLMVGHPGETEEDFEDLKEFVRKVRFDRMGAFAYSEEEGTYAAETYEDS 340

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQS 437
           + + VK  RL  L    +      +   +G+ ++V+I++   E    +GR+    P +  
Sbjct: 341 IPQEVKQARLDELMDIQQGISAELSAEKIGKQMKVIIDRL--EGDYYIGRTEFDSPEVDP 398

Query: 438 VVLNS---KNHNIGDIIKVRITDVKISTLYGELV 468
            VL     +   IG   +V + +     LY +++
Sbjct: 399 EVLIDRSERELKIGQFYQVEVVNADDFDLYAKII 432


>gi|206890774|ref|YP_002248696.1| hypothetical protein THEYE_A0857 [Thermodesulfovibrio yellowstonii
           DSM 11347]
 gi|238055293|sp|B5YKD1|RIMO_THEYD RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|206742712|gb|ACI21769.1| conserved hypothetical protein [Thermodesulfovibrio yellowstonii
           DSM 11347]
          Length = 425

 Score =  353 bits (906), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 117/448 (26%), Positives = 212/448 (47%), Gaps = 28/448 (6%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + F V + GC  N  DS  + D    +G+  V     AD + +NTC     A E+    +
Sbjct: 2   KNFTVITLGCPKNTVDSRHLIDALTKEGFYYVEEFKKADFVFINTCCFINDAKEESIDEI 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
                 K        D  ++V GC+++  G+E+ +  P ++ V G     ++ + +++  
Sbjct: 62  LTAAKFK-------IDRKLIVFGCLSKRYGKELEKEIPEIDAVFGVDEKDKIIDYIKQFS 114

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
                +  ++               Y  +     ++ I EGC + C+FC++P  RG   S
Sbjct: 115 KNSNFISQNF--------------QYTVEPPSYRYIKIAEGCSRRCSFCIIPDVRGPFRS 160

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
            +  +++ E    + +G+ E  L+ Q++    GK L G   T   LL  L  IKG   +R
Sbjct: 161 LNPEEILKEVENFVHSGIKEFILVAQDIT-QYGKDLKG--YTLKRLLKDLCSIKGDFWIR 217

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
               +P D+ + LI+   D + ++ YL +P+Q   +RIL+ M RR T  EY + I +IR 
Sbjct: 218 LLYLYPSDIDENLIETIADEEKIVKYLDIPMQHSEERILRLMGRRGTKKEYLKKIKQIRQ 277

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             P++ + S FIVGFP ET+++F+  +D ++++ + +   FKYS   GT   ++  Q+ E
Sbjct: 278 AIPEVTLRSTFIVGFPTETEEEFQRLVDFIEEVQFDRLGVFKYSKEEGTKAYSLKGQIPE 337

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE--KGKLVGRSPWLQSVVL-- 440
           NVK  R   +  +     +  N A +G+  E LI+    +    +L   +P +  VV+  
Sbjct: 338 NVKNRRYNEIMARQAVISLEKNRALIGKKYEALIDYIDADIAIARLYCHAPEIDGVVILE 397

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
           N+ +   G+ + + IT+     + G +V
Sbjct: 398 NTADLKAGEKVTILITEGYEYDVKGVIV 425


>gi|296112956|ref|YP_003626894.1| MiaB family tRNA modifying enzyme [Moraxella catarrhalis RH4]
 gi|295920650|gb|ADG61001.1| MiaB family tRNA modifying enzyme [Moraxella catarrhalis RH4]
          Length = 504

 Score =  353 bits (906), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 128/461 (27%), Positives = 201/461 (43%), Gaps = 37/461 (8%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC   + DS R+      +GY+  N+ D ADL+V+NTC   E A ++    +G
Sbjct: 57  KIGFVSLGCPKALVDSERIITELTYEGYQVANNYDGADLVVVNTCGFIESAVQESLDAIG 116

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                         +  V+V GC+   + E+I    P V  V G   Y  +   +     
Sbjct: 117 EA---------INKNGKVIVTGCLG-KDAEKIRTMHPAVLAVTGAHAYEEVISAV----- 161

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
              V     S E   +   I D G        A++ I EGC+  CTFC++P  RG  +SR
Sbjct: 162 NHHVPKPIKSKEYDPKIDLINDAGIKLTPKHYAYVKISEGCNHRCTFCIIPSLRGDLVSR 221

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE---------KCTFSDLLYSLSE 256
            +  V+ EA  L  +GV E+ ++ Q+ +A  G  L  +         K  F D+  ++S+
Sbjct: 222 PIDSVMKEAVALKKSGVKELLVISQDTSA-YGVDLKYKTVFWEGWPLKSKFYDMCEAMSK 280

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKA-----HGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
           +   VRL Y   +P   +   I A        +  L+PYL +P Q  S  +LK+M R   
Sbjct: 281 LGIWVRLHYVYPYPHVDAVVQIMADSMTASAGMGGLLPYLDIPFQHASPNVLKAMKRPAM 340

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
           +    + I   R++ PDI I S F+VGFPGETD+DF   +D + K    +   F YS   
Sbjct: 341 SENTLERIQAWRAICPDIVIRSTFVVGFPGETDEDFEYLLDWLTKARLDRVGCFTYSEIE 400

Query: 372 GTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR 431
           G   +++   V E+VK  R   L    ++         VG+ + VL+++   E+   + R
Sbjct: 401 GAVANDLPNPVPESVKQSRYERLMALQQKISAEKLAEKVGKTLVVLVDEIDTEENIAICR 460

Query: 432 S----PWLQSVVLNSK---NHNIGDIIKVRITDVKISTLYG 465
           S    P +   V           GD++ V I +     L+ 
Sbjct: 461 SYADAPEIDGHVYVDNIDATVKAGDMLTVVIDEASDYDLFA 501


>gi|300775750|ref|ZP_07085611.1| 2-methylthioadenine synthetase [Chryseobacterium gleum ATCC 35910]
 gi|300505777|gb|EFK36914.1| 2-methylthioadenine synthetase [Chryseobacterium gleum ATCC 35910]
          Length = 448

 Score =  353 bits (906), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 124/429 (28%), Positives = 212/429 (49%), Gaps = 16/429 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +     + GC++N  ++  +       GYE+V+  + A++ V+NTC + E A  +    +
Sbjct: 6   RTAAFHTLGCKLNFAETSTIARQLTDAGYEKVSFDEKANVYVINTCSVTENADRECKLHV 65

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R        +K   + LVV+ GC AQ + EEI  +   V++V+G +  + +   L+   
Sbjct: 66  KRA-------MKANPEGLVVIVGCYAQLKPEEI-SQIEGVDLVLGAKEKFNILSYLDDLE 117

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
             +   +       + E      G Y+      AFL +Q+GCD  CT+C +P  RGI  S
Sbjct: 118 KSE---NEGIVHSCEIEETDFFIGSYSIGDRTRAFLKVQDGCDYKCTYCTIPLARGISRS 174

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK---CTFSDLLYSLSEIKGLV 261
            ++  V+  A ++    + EI L G N+    GKG  G K    TF DL+  L +++G+ 
Sbjct: 175 DTIENVLRNATEIAAKDIKEIVLTGVNIG-DYGKGEFGNKRHEHTFLDLISELDKVEGIE 233

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R ++  P  + D  I+        +P+ H+P+QSGSD +LK M RR+    Y   +++
Sbjct: 234 RIRISSIEPNLLKDESIELVSKSRSFVPHFHIPLQSGSDDLLKKMKRRYLTKLYNDRVNK 293

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           IR V PD AI  D IVGFPGET++ F  T + ++++       F YS R  T  ++M E 
Sbjct: 294 IREVMPDAAIGVDVIVGFPGETEERFMETYNFLNELPITYLHVFTYSERENTEAASMDEV 353

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           V    + +R   L+    +++++F    +G+ + VL E   K+ GK+ G +     V  +
Sbjct: 354 VPVTERKKRNKMLRILSEKKKMAFYQTQLGKTLPVLWEHENKD-GKMFGFTENYVRVQKD 412

Query: 442 SKNHNIGDI 450
               ++  I
Sbjct: 413 FDPASVNQI 421


>gi|320450578|ref|YP_004202674.1| hypothetical protein TSC_c15080 [Thermus scotoductus SA-01]
 gi|320150747|gb|ADW22125.1| conserved hypothetical protein [Thermus scotoductus SA-01]
          Length = 434

 Score =  353 bits (906), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 132/454 (29%), Positives = 209/454 (46%), Gaps = 39/454 (8%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC   + DS ++     + GYE   + ++A+L+V+NTC     A E+    +G
Sbjct: 3   KIGFVSLGCPKALVDSEQILSRLKALGYETSATYEEAELVVVNTCGFITPAIEESLEAIG 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                            VVV GC+     E I  R P V  V GP    R+ + ++    
Sbjct: 63  EALRENGK---------VVVTGCLGAR-PEVIRERYPNVLEVTGPGEVERVLQAVQEVLP 112

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
             R              L ++           A+L + EGCD  C+FC++P  RG   SR
Sbjct: 113 APR-----------NPLLDLIPPQVKLTPRHYAYLKLSEGCDHRCSFCIIPKLRGGLRSR 161

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAW-----RGKGLDGE---KCTFSDLLYSLSEI 257
              +V+ EA +L+  G  E+ L+ Q+++A+       +   G+   K    DLL  ++E+
Sbjct: 162 DAGEVLAEAARLVATGTRELLLIAQDLSAYGVDLRHRESFWGDRLVKAELKDLLSHMAEL 221

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
              +RL Y   +P      L+    +   ++PYL +P+Q  S+RIL+ M R      + +
Sbjct: 222 GAWIRLHYVYPYPHV--RELLPLMAE-GKVLPYLDVPLQHASERILRLMRRPGGYQSHLK 278

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
            +   R V P++AI S FIVGFPGET++DF+  +D + +    +   F YSP  G   + 
Sbjct: 279 TLKAWREVVPELAIRSSFIVGFPGETEEDFQILLDFLQEAELDRVGVFTYSPVEGAEANA 338

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SP 433
           +   V E VK ER   L +   E  +  N + VG+ +EVL+++   E G  VGR    SP
Sbjct: 339 LSGHVPEEVKEERKARLMEVQAEISLRKNQSFVGKTLEVLVDEL-PEPGLAVGRSYRDSP 397

Query: 434 WLQSVVLNSKN--HNIGDIIKVRITDVKISTLYG 465
            +  +V    +    +G+ I VRIT      LYG
Sbjct: 398 GIDGLVYVETDGTARVGERIPVRITRADTYDLYG 431


>gi|95930239|ref|ZP_01312977.1| MiaB-like tRNA modifying enzyme [Desulfuromonas acetoxidans DSM
           684]
 gi|95133702|gb|EAT15363.1| MiaB-like tRNA modifying enzyme [Desulfuromonas acetoxidans DSM
           684]
          Length = 428

 Score =  353 bits (906), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 122/441 (27%), Positives = 219/441 (49%), Gaps = 17/441 (3%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
             + + GC+ N ++S  ME M   QGY+ V     A+L+++NTC +      +    + R
Sbjct: 4   VSIVTLGCKANQFESAAMERMLREQGYQIVPFEQGAELVIVNTCTVTSATDAQSRKLVRR 63

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
            R L        G   +VV GC AQ + ++I    P V  V+G      L ++L   + G
Sbjct: 64  ARRL-------NGQCRIVVTGCYAQIQPQQIA-ELPGVMYVIGNSEKQDLIDIL--CQEG 113

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
            +V   D + + +   L I     + +    AF+ IQ GC+ FC++C++PY RG   S +
Sbjct: 114 PQVQVGDIASQQQCPDLKIASFSEHSR----AFVQIQSGCNAFCSYCIIPYARGRSRSVN 169

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
            S VVD+  +L+  G  E+ L G ++    G+ L  + CT +DLL +L       R+R  
Sbjct: 170 TSAVVDQVNQLVAGGYREVVLTGIHIG-NYGQDLTPQ-CTLTDLLNALLTQTDGCRIRLG 227

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
           +  P+++++ LI        + P+ H+P+QSG D +L+ MNR ++  ++   ++ +    
Sbjct: 228 SIEPQEVNEALIDCVQHSSRICPHFHIPLQSGCDDVLQQMNRHYSIRQFHDTVELLCQKI 287

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           P ++I  D I GFPGET+   R T + +  +       F +S R GTP + M +Q+  ++
Sbjct: 288 PRVSIGIDVISGFPGETEAQHRHTCEFISSLPVHYLHVFPFSARPGTPAATMPDQIPGDI 347

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHN 446
             +R   L+    E+   + +  +G++++V++E   K   +  G S    +V++  +   
Sbjct: 348 AKQRAAELRVLAEEKASQYREQFIGRLVDVVLESRTK-NNQWQGTSAEYLTVLVAGEQGA 406

Query: 447 IGDIIKVRITDVKISTLYGEL 467
            G+++ V I  V  + L G L
Sbjct: 407 AGELVSVEIVGVSQNFLVGTL 427


>gi|170741411|ref|YP_001770066.1| ribosomal protein S12 methylthiotransferase [Methylobacterium sp.
           4-46]
 gi|238066403|sp|B0UQE6|RIMO_METS4 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|168195685|gb|ACA17632.1| MiaB-like tRNA modifying enzyme YliG [Methylobacterium sp. 4-46]
          Length = 441

 Score =  353 bits (906), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 137/461 (29%), Positives = 209/461 (45%), Gaps = 38/461 (8%)

Query: 21  CIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKV 80
              P+  FV S GC   + DS R+     ++GYE     D AD++++NTC   + A  + 
Sbjct: 6   SAAPKISFV-SLGCPKALVDSERILTHLRAEGYELARKHDGADVVIVNTCGFLDSAKAES 64

Query: 81  YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140
              +G              +  V+V GC+  A+ EEI  R P +  V GPQ Y  +   +
Sbjct: 65  LQAIGEA---------MAENGRVIVTGCMG-AQPEEIRERYPNLLAVTGPQAYESVVAAV 114

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
             A              D +  L +   G        A+L I EGC+  CTFC++P  RG
Sbjct: 115 HEA---------VPPAHDPYLDL-VPPQGVKLTPRHYAYLKISEGCNNRCTFCIIPSLRG 164

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL--------DGE-KCTFSDLL 251
             +SR    V+ EA KL+  GV E+ ++ Q+ +A  G  L        DGE +  F DL 
Sbjct: 165 DLVSRPAGDVLREAEKLVKAGVKELLVISQDTSA-YGVDLRYAASPWRDGEVRARFVDLA 223

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
            +L E+   VRL Y   +P       + A G    ++PYL +P+Q  S  +L+ M R   
Sbjct: 224 RALGELGVWVRLHYVYPYPHVDEVIPLMAEG---KVLPYLDMPLQHASPSVLRRMRRPAN 280

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
             +  + I   RSV PD+AI S FIVGFPGET+ +F   +  + +    +   F Y P  
Sbjct: 281 QEKMLERIRGWRSVCPDLAIRSTFIVGFPGETEAEFEELLSWLAEAKLERVGCFPYEPVR 340

Query: 372 GTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK--EKGKLV 429
           G   + +   V + VKAER     +      +    A VG+ + V+I++ G    +G+  
Sbjct: 341 GAAANEVAPPVPDEVKAERYRRFMEAQAAVSLRLQRAKVGKRLPVIIDEAGPTVARGRSK 400

Query: 430 GRSPWLQS-VVLNS-KNHNIGDIIKVRITDVKISTLYGELV 468
             +P +   V + S +    GDI+ V+I       L+G  V
Sbjct: 401 SDAPEIDGSVHVASRRPVRAGDIVTVKIERADTYDLHGIAV 441


>gi|86132712|ref|ZP_01051304.1| MiaB-like tRNA modifying enzyme [Dokdonia donghaensis MED134]
 gi|85816666|gb|EAQ37852.1| MiaB-like tRNA modifying enzyme [Dokdonia donghaensis MED134]
          Length = 447

 Score =  353 bits (906), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 124/440 (28%), Positives = 211/440 (47%), Gaps = 14/440 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++    + GC++N  ++  +   F  +G+++V+  + AD+ V+NTC + E A +      
Sbjct: 5   KKVAFYTLGCKLNFSETSTIARSFGKEGFDKVDFSEAADVYVINTCSVTENADK------ 58

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R +N+     K   D + V  GC AQ + EE+      V++V+G    + +   +    
Sbjct: 59  -RFKNIVKQAQKANPDAVKVAVGCYAQLKPEELAAVD-GVDLVLGATEKFNVTSYINDLL 116

Query: 145 FG-KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
               R  D       + +        Y+      AFL +Q+GCD  CT+C +P  RGI  
Sbjct: 117 NNPDRARDGGEVHACEIQDADFYVSSYSIGDRTRAFLKVQDGCDYKCTYCTIPLARGISR 176

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK---CTFSDLLYSLSEIKGL 260
           S +L  V+D A K+    + EI L G N+    GKG  G K    TF +L+  L  + G+
Sbjct: 177 SDTLQNVLDNAAKIAAQDIKEIVLTGVNIG-DYGKGEFGNKKHEHTFLELVQELDRVDGI 235

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            RLR ++  P  + +  I+   +    +P+ H+P+QSGS++IL  M RR+    Y   + 
Sbjct: 236 ERLRISSIEPNLLKNETIEVVSNSRTFVPHFHIPLQSGSNKILGLMRRRYQRELYVDRVA 295

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           +I+ V P   I  D IVGFPGETD+DF  T + ++ +  +    F YS R  TP + M  
Sbjct: 296 KIKEVMPHACIGVDVIVGFPGETDEDFLETYNFLNSLDISYLHVFTYSERDNTPAATMDG 355

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440
            V +NV+++R   L+    + + +F ++ +     VL E   KE G + G +     V  
Sbjct: 356 VVPKNVRSKRSKMLRGLSAKMRRAFYESQLDTKRTVLFESENKE-GYIHGFTENYVKVKA 414

Query: 441 NSKNHNIGDIIKVRITDVKI 460
                 +  + +V++T +  
Sbjct: 415 PWNPELVNQLHEVQLTSIDD 434


>gi|116747616|ref|YP_844303.1| RNA modification protein [Syntrophobacter fumaroxidans MPOB]
 gi|116696680|gb|ABK15868.1| RNA modification enzyme, MiaB family [Syntrophobacter fumaroxidans
           MPOB]
          Length = 440

 Score =  353 bits (906), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 115/445 (25%), Positives = 210/445 (47%), Gaps = 12/445 (2%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           +  ++  V++ GC++N Y+S  M +      ++ V+    ADL V+++C +   AA +  
Sbjct: 1   MTSKKVAVETLGCKVNQYESSVMMESLMQANWQPVSFKGAADLYVVHSCAVTSSAAFQTR 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             L           +     L+ V GC AQ + + +     +   ++G    + +   +E
Sbjct: 61  QLL-------RRARRLNPGALIAVVGCDAQLDHDRLAA-GELATHILGTAEKFDIARWIE 112

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
                         V D   RLS             A+L +Q+GC+ +C++CVVPYTRG 
Sbjct: 113 VPASFAAPCRAVKGVNDI-PRLSAQAVSCMHTGRTRAYLKVQDGCNAYCSYCVVPYTRGR 171

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
             S    +V+   R+ ++ G  E+ L G ++  W GK L   +   + LL  + +     
Sbjct: 172 SRSLPADEVLSRLRRFVEVGYREVILTGIHLGQW-GKDLTPTR-DLAGLLDRIGDSDSPP 229

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R ++  P + S  L++    +  + P+ H+P+QSG D +L +M+R +TA +Y  +I  
Sbjct: 230 RVRLSSLEPLEWSAGLLRRISTVPWICPHFHIPLQSGDDDVLAAMHRPYTALQYANLIRE 289

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R + P+ A+ +D +VGFPGET   F  T+ LV+++       F +SPR GTP ++M  +
Sbjct: 290 LRMLFPEAALGADVMVGFPGETQRRFLNTLHLVEELPLTYLHVFPFSPRPGTPAADMPGR 349

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           +  +   +R   LQ     ++  F++  +G+ +EVL+E      G L G +     V+  
Sbjct: 350 IPGDETKKRARLLQDIGTRKRRQFSERFLGRSVEVLVESAAPRAGWLRGTTANYLQVLFP 409

Query: 442 -SKNHNIGDIIKVRITDVKISTLYG 465
                  G I++V++       L  
Sbjct: 410 AGPPVLPGSIVRVQVVRSGDRELIA 434


>gi|299145602|ref|ZP_07038670.1| 2-methylthioadenine synthetase [Bacteroides sp. 3_1_23]
 gi|298516093|gb|EFI39974.1| 2-methylthioadenine synthetase [Bacteroides sp. 3_1_23]
          Length = 436

 Score =  353 bits (906), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 107/454 (23%), Positives = 201/454 (44%), Gaps = 35/454 (7%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEKVYS 82
           +   + + GC  N+ DS ++       GY   +  +    ++ V+NTC     A E+  +
Sbjct: 4   KTIDIITLGCSKNLVDSEQLMRQLEEVGYSVTHDTENPQGEIAVINTCGFIGDAKEESIN 63

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +      K      G    + V GC+++   +E+    P V+   G   +  L + L +
Sbjct: 64  MILEFAERKEE----GDLKKLFVMGCLSERYLKELAVEIPQVDKFYGKFNWKELLQDLGK 119

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
                      Y  E   ER       Y       A+L I EGCD+ C++C +P   G  
Sbjct: 120 V----------YHDELYIERTLTTPQHY-------AYLKISEGCDRKCSYCAIPIITGHH 162

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           IS+ + +++DE R L+  GV E  ++ Q +  + G     +K    +L+  +S+I G+  
Sbjct: 163 ISKPMEEILDEVRYLVSQGVKEFQVIAQELT-YYGIDRY-KKQMLPELIERISDIPGVEW 220

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R   ++P      L +   + D +  Y+ + +Q  SD +LK M R+ +  +  Q+I++ 
Sbjct: 221 IRLHYAYPAHFPTDLFRVMRERDNVCKYMDIALQHISDNMLKLMRRQVSKEDTYQLIEQF 280

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN-MLEQ 381
           R   P I + +  +VG PGET++DF    + V K+ + +  +F YS   GT  +    + 
Sbjct: 281 RREVPGIHLRTTLMVGHPGETEEDFEDLKEFVRKVRFDRMGAFAYSEEEGTYAAETYEDS 340

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQS 437
           + + VK  RL  L    +      +   +G+ ++V+I++   E    +GR+    P +  
Sbjct: 341 IPQEVKQARLDELMDIQQGISAELSAEKIGKQMKVIIDRL--EGDYYIGRTEFDSPEVDP 398

Query: 438 VVLNS---KNHNIGDIIKVRITDVKISTLYGELV 468
            VL     +   IG   +V + +     LY +++
Sbjct: 399 EVLIDRSERELKIGQFYQVEVVNADDFDLYAKII 432


>gi|189218450|ref|YP_001939091.1| 2-methylthioadenine synthetase [Methylacidiphilum infernorum V4]
 gi|238066396|sp|B3DYX1|RIMO_METI4 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|189185308|gb|ACD82493.1| 2-methylthioadenine synthetase [Methylacidiphilum infernorum V4]
          Length = 445

 Score =  353 bits (906), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 121/452 (26%), Positives = 205/452 (45%), Gaps = 26/452 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R  + S GC  N+ DS  M       G     S   AD++++NTC     A ++    + 
Sbjct: 9   RVGMISLGCSKNLVDSEIMLGKLLEAGAVLTASPHQADILLINTCGFILPAKKESIDTIL 68

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
              + + +  K+     +VV+GC+ Q  G+E+    P V++ +G     ++   +     
Sbjct: 69  AAIHRRTTTSKKQK---IVVSGCLYQRYGKELSALLPEVDLFLGLDDIPKIDLYV----- 120

Query: 146 GKRVVDTDYSVED----KFERLSIVDGGYNR---KRGVTAFLTIQEGCDKFCTFCVVPYT 198
            K+++DT  S ++     F    I D  + R         +L I EGC+  CTFC++P  
Sbjct: 121 -KQLIDTPPSSKEMPALNFSPRFIPDFEHPRLKLTPSHFGYLKIAEGCNHPCTFCIIPRI 179

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258
           RG   SR++  VV EA  +I  G  EI L+ Q+   +     +G+     DLL SL  ++
Sbjct: 180 RGRYRSRTIQNVVAEAEAMIRRGTKEIILVSQDTTFYGRDLSNGQSSLLVDLLDSLETLE 239

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           G   +R   +HP   +  LI+       +  Y+ +P+Q  S+ +L+ M R+      R++
Sbjct: 240 GDFWIRLLYTHPAHWNASLIEKFSTSKKIAKYIDIPIQHISNPVLERMQRKTEESYIREL 299

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           +  +R+   + AI +  IVGFPGE+++DF+     V    + +   F YS   GT    M
Sbjct: 300 LAEMRTKIKNAAIRTTLIVGFPGESEEDFQKLCSFVSSFKFDRLGVFPYSAEEGTKAEKM 359

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPW---- 434
             QV E VK  R   + +  +E     N   VG+ ++VL++  G      V R+ W    
Sbjct: 360 NGQVPEIVKKRRAKKIMELQKEIAKEKNKELVGKTLKVLVDYPG------VARTEWDCPD 413

Query: 435 LQSVVLNSKNHNIGDIIKVRITDVKISTLYGE 466
           + ++V    +   G   +V+I D K   L   
Sbjct: 414 VDALVHVPYHLPPGHFTEVKIVDFKEYDLIAR 445


>gi|46203304|ref|ZP_00208896.1| COG0621: 2-methylthioadenine synthetase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 322

 Score =  353 bits (905), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 181/320 (56%), Positives = 235/320 (73%), Gaps = 5/320 (1%)

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           +VDT++ VEDKF+ L        R RGVT FLT+QEGCDKFC FCVVPYTRG E+SRS++
Sbjct: 1   MVDTEFPVEDKFDHLP-----ARRNRGVTGFLTVQEGCDKFCAFCVVPYTRGAEVSRSVA 55

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
            VV+EAR+L++ GV EITL+GQNVNA+ G+G DG   T   L+ +LS + GL RLRYTTS
Sbjct: 56  AVVEEARRLVEGGVREITLIGQNVNAYHGEGPDGAPSTLGRLMDALSAVPGLARLRYTTS 115

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
           HP D +D LI+AH    ++MPYLHLPVQSG+DRIL++MNRRHT  +YR++I RIR  RPD
Sbjct: 116 HPNDFADDLIRAHATNPLVMPYLHLPVQSGADRILQAMNRRHTGDDYRRLIARIREARPD 175

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           IA+SSDFIVGFPGETD DF  TM LV + G+A AFSFKYSPR GTP +   + V E VK 
Sbjct: 176 IALSSDFIVGFPGETDADFADTMRLVSETGFAAAFSFKYSPRAGTPAAEREDAVPEAVKT 235

Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIG 448
           ERL  LQ  L  Q+ +FN+A VG + E+L+EK G+  G++ G++P LQ+V  ++    IG
Sbjct: 236 ERLAALQALLDAQRHAFNEAAVGTVTEILVEKTGRHPGQVAGKTPHLQAVQFDASPSTIG 295

Query: 449 DIIKVRITDVKISTLYGELV 468
            ++ VRI     ++L+GE++
Sbjct: 296 TLVPVRIVRSGSNSLFGEVL 315


>gi|241667259|ref|ZP_04754837.1| 2-alkenal reductase [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
 gi|254875810|ref|ZP_05248520.1| tRNA-methylthiotransferase miaB [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254841831|gb|EET20245.1| tRNA-methylthiotransferase miaB [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 439

 Score =  353 bits (905), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 126/460 (27%), Positives = 205/460 (44%), Gaps = 40/460 (8%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           +P+  FV S GC  N+ DS R+     ++GY+ V+S D+AD++++NTC     A ++   
Sbjct: 4   IPKIGFV-SLGCPKNLVDSERIITKLKAEGYDLVDSYDNADMVIVNTCGFLNSAIDESLE 62

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +G              +  V+V GC+     + I  + P V  + GPQ Y     L+E 
Sbjct: 63  VIGEA---------IAENGKVLVTGCLGNK-ADLIKEKHPEVLSITGPQDYEN---LIEA 109

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
                 +   D+          +   G        ++L I EGC+  CTFC++P  RG  
Sbjct: 110 VHTHAPIFANDFVS-------LVPPQGIKLTPRHYSYLKISEGCNNTCTFCIIPDIRGKL 162

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-----RGKGLDGEK---CTFSDLLYSL 254
            SRS+  ++ EA KL + GV E+ ++ Q+ +A+        G+  +K       DL  +L
Sbjct: 163 KSRSIDNIMKEAEKLKNAGVKELLVISQDTSAYGVDIKYKSGIWNDKEYQSNILDLATAL 222

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
            ++    RL Y   +P       + A G    ++PYL +P+Q  S  +LK M R     +
Sbjct: 223 GDLDMWTRLHYVYPYPHVDKIVPLMAQG---KILPYLDVPLQHSSPEVLKRMKRPAHTQK 279

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
               I++ R + PDI I S FIVGFPGET+ DF   +D  +K    +   FKYS   G  
Sbjct: 280 TLDRINKWRDICPDITIRSTFIVGFPGETEADFEHLLDFAEKAQLDRVGCFKYSEVEGAK 339

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS-- 432
            +     + E +K +RL        +         VG   +V+I+   K++   +GR+  
Sbjct: 340 ANQFDNLISEEIKQQRLDEFMGLQAQISADKLQRFVGIEQQVIIDVINKDENYAIGRTKY 399

Query: 433 --PWLQSVVLNSK----NHNIGDIIKVRITDVKISTLYGE 466
             P +   V+       N  +G+   V IT+     L  +
Sbjct: 400 DAPEVDGQVIIGDALERNLKVGEFATVEITESTEYDLIAD 439


>gi|315497159|ref|YP_004085963.1| miab-like tRNA modifying enzyme ylig [Asticcacaulis excentricus CB
           48]
 gi|315415171|gb|ADU11812.1| MiaB-like tRNA modifying enzyme YliG [Asticcacaulis excentricus CB
           48]
          Length = 470

 Score =  353 bits (905), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 130/469 (27%), Positives = 202/469 (43%), Gaps = 39/469 (8%)

Query: 14  VSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIR 73
           +S        P+  FV S GC   + DS R+      +GY        AD++V+NTC   
Sbjct: 1   MSNAPAASDAPKVGFV-SLGCPKALVDSERILTRLKGEGYATAAEYAGADVVVVNTCGFL 59

Query: 74  EKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTY 133
           + A ++  + +G                 VVV GC+  AE + I  R P V  V G   Y
Sbjct: 60  DSARDESLNAIGEALAENGK---------VVVTGCLG-AEADLIRERFPNVAAVTGAHQY 109

Query: 134 YRLPELLERARFGKRVVDTDYSVEDKFERLSIV-DGGYNRKRGVTAFLTIQEGCDKFCTF 192
             + E + R            +  D F  L    D G        A+L I EGCD  C+F
Sbjct: 110 EEVMEAVRR---------IVPAKPDPFRPLVPENDPGVRLTPKHYAYLKISEGCDHRCSF 160

Query: 193 CVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL---------DGE 243
           C++P  RG   SR + +V+ EA  L  NGV E+ ++ Q+ +A  G  +         D  
Sbjct: 161 CIIPSLRGDLASRPVDEVLREAEVLAANGVKELLVVSQDTSA-YGLDIRYAEGRWRNDYY 219

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
           K +F DL   L E+   VR+ Y   +P   S   + A G    ++PYL +P Q  S ++L
Sbjct: 220 KASFEDLSRGLGELGIWVRMHYVYPYPHVNSVIPLMAEG---KILPYLDIPFQHASPKVL 276

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           K+M R     +    I   R + PD+ + S F+VGFPGET+ DF   +D ++     +  
Sbjct: 277 KAMRRPGNQDKTLDRILSWREICPDLTLRSTFVVGFPGETEADFNLLLDWLEAAQIDRVG 336

Query: 364 SFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK 423
           +F Y    G    ++ + V E VK +RL                  VGQ+++VL+++   
Sbjct: 337 AFAYENVEGAAARDLPDHVPEEVKQDRLARFMAVASRISAQKLQNKVGQVVDVLVDEIRS 396

Query: 424 EK---GKLVGRSPWLQSVVLNSK--NHNIGDIIKVRITDVKISTLYGEL 467
           +     +  G +P +   +        + GD  K ++T      L+GE 
Sbjct: 397 DGVAVARTKGDAPEIDGHIYLKGFTGLSAGDYAKAKVTRADAYDLWGEP 445


>gi|325474131|gb|EGC77319.1| hypothetical protein HMPREF9353_01669 [Treponema denticola F0402]
          Length = 451

 Score =  353 bits (905), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 144/454 (31%), Positives = 240/454 (52%), Gaps = 17/454 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
            +F ++YGCQMN  +S  ME +   +G+   +  +  DL+++NTC +R  A  +V   LG
Sbjct: 2   TYFFETYGCQMNQAESSSMEQVLIEKGWTDASDAEHCDLLIINTCSVRITAENRVLGRLG 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
               LK  R        V++ GC+A+    EI +  P+++ VVG      LP++ +  + 
Sbjct: 62  HFSGLKKKRK-----FFVLLIGCMAERLYTEIQKEFPLIDYVVGMFERNLLPQIFDEIKT 116

Query: 146 -----GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
                      T  ++E+K           +  +   +++ I  GC+ FCT+C+VPY RG
Sbjct: 117 RLKDDNYMAEFTHNNIEEKPVSGYYFAPLSHSPKSFQSYVPIMNGCNNFCTYCIVPYVRG 176

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE----KCTFSDLLYSLSE 256
            E+SR +++++ E  +L   GV EITLLGQNVN+++G+  +G         + +     +
Sbjct: 177 REVSRPVNEILQEITELSSRGVREITLLGQNVNSYKGEDGEGRVIDFPKLLTLIAREADK 236

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
              +  +R+ +SHP+DMSD LI        L   +HLPVQ GSD ILK MNR +T   Y+
Sbjct: 237 TDMIRWIRFMSSHPKDMSDALIDTIAAEKRLCKLVHLPVQHGSDTILKRMNRVYTIEHYK 296

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
             I R++   PDIA+S+D ++GFPGET+DD +A +DL+ +I +  AF + Y+PR GT   
Sbjct: 297 NRIKRLKETIPDIALSTDILMGFPGETEDDVKAILDLMQEIEFDSAFMYHYNPREGTKAF 356

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWL 435
           N  +++ E +K ERL  +     +       A +G+ +++L+E H + E+ +L G +   
Sbjct: 357 NYPDRIPEEIKIERLGRVIDLQLKITAKKMKAKLGKKVDILVESHSRNERSELFGHTEQG 416

Query: 436 QSVVLNS--KNHNIGDIIKVRITDVKISTLYGEL 467
           +  V+        IG+     + ++K  T    L
Sbjct: 417 EMTVIQGNPPESLIGNFAHAELKELKGKTFRANL 450


>gi|27379686|ref|NP_771215.1| ribosomal protein S12 methylthiotransferase [Bradyrhizobium
           japonicum USDA 110]
 gi|81737050|sp|Q89LG9|RIMO_BRAJA RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|27352838|dbj|BAC49840.1| blr4575 [Bradyrhizobium japonicum USDA 110]
          Length = 439

 Score =  353 bits (905), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 130/455 (28%), Positives = 203/455 (44%), Gaps = 37/455 (8%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R    S GC   + DS R+     ++GYE     D AD++++NTC   + A ++  S +G
Sbjct: 6   RISFTSLGCPKALVDSERIITRLRAEGYELARKHDGADIVIVNTCGFLDSAKQESLSAIG 65

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                         +  V+V GC+  AE E+I +  P V  + GPQ Y  + + + RA  
Sbjct: 66  EA---------MAENGKVIVTGCMG-AEPEQIEQAYPGVLSITGPQQYESVLDAVHRALP 115

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                  D           +   G        A+L I EGC+  CTFC++P  RG  +SR
Sbjct: 116 PAHNPHLDL----------VPPQGIKLTPRHYAYLKISEGCNNRCTFCIIPKLRGDLVSR 165

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE---------KCTFSDLLYSLSE 256
             + V+ EA +L+  GV E+ ++ Q+ +A  G  L            +  F DL   L E
Sbjct: 166 PANDVLREAERLVGAGVKELLVISQDTSA-YGVDLKYAESPWKDRQVRAKFLDLARELGE 224

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           +   VRL+Y   +P       +   G    ++PYL +P Q  S  +LK+M R     +  
Sbjct: 225 LGAWVRLQYVYPYPHVDEVIALMTQGT---VLPYLDIPFQHASPEVLKAMKRPAAQDKTL 281

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
             I R R   PD+A+ S FIVGFPGETD DF   +D +D+    +   FKY P  G   +
Sbjct: 282 ARIKRWREECPDLALRSTFIVGFPGETDADFAYLLDWLDEAEIDRLGCFKYEPVAGATSN 341

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK--EKGKLVGRSPW 434
            +   V E VK ER   L  + ++         VG   +++I++ G    +G+    +P 
Sbjct: 342 AIANPVPEEVKQERYNALMARQQKISARRLKRKVGTRQQIIIDEVGPTVARGRSKADAPE 401

Query: 435 LQSVVLNSK--NHNIGDIIKVRITDVKISTLYGEL 467
           +   V  S      +G+I+  +I       L+G +
Sbjct: 402 IDGAVYLSSRRPLRVGEIVTAKIERADQYDLHGSV 436


>gi|83312146|ref|YP_422410.1| ribosomal protein S12 methylthiotransferase [Magnetospirillum
           magneticum AMB-1]
 gi|123767962|sp|Q2W2S4|RIMO_MAGSA RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|82946987|dbj|BAE51851.1| 2-methylthioadenine synthetase [Magnetospirillum magneticum AMB-1]
          Length = 448

 Score =  353 bits (905), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 123/456 (26%), Positives = 203/456 (44%), Gaps = 37/456 (8%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +  + S GC   + DS R+     ++GY+   S D AD++++NTC   + A  +    +G
Sbjct: 7   KVGIVSLGCSKALVDSERILTKLRAEGYDISGSYDGADVVIVNTCGFLDSARAESLEAIG 66

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                            V+V GC+   + + I    P V  V GP  Y  + E +  A  
Sbjct: 67  EALAENGK---------VIVTGCMG-GDEKAIRSAHPSVLAVSGPHQYQAVVEAVHAA-- 114

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                          +   +   G +      A+L I EGC+  C+FC++P  RG  +SR
Sbjct: 115 --------IPPLHDPKLSLVPPEGLHLTPHHYAYLKISEGCNNSCSFCIIPDIRGPLMSR 166

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE---------KCTFSDLLYSLSE 256
             + V+ EA +L + GV E+ ++ Q+ +A  G  L            +   +DL  +L E
Sbjct: 167 PAADVLGEAERLAEAGVRELLVISQDTSA-YGLDLRHAESTWRGRPVRAHLTDLASALGE 225

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           +   +RL Y   +P       + A G    ++PYL +P Q  S  +LK+M R     +  
Sbjct: 226 LGIWIRLHYVYPYPHVDEIIPLMAEG---KILPYLDIPFQHASPNVLKAMRRPANQEKVL 282

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
             I   R   PD+ + S FIVGFPGET++DF + +  +++    +   FKY    G P +
Sbjct: 283 GRIRSWRETCPDLTLRSTFIVGFPGETEEDFDSLLGWLEEAQLDRVGCFKYEDVKGAPAN 342

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPW 434
              +QVDE+VK ER     +  R+       A  G  IEV+I++  +E   G+    SP 
Sbjct: 343 AFADQVDEDVKEERHQRFMEAARQIADERGAAKEGTRIEVIIDEVDEEGAIGRSKADSPE 402

Query: 435 LQSVVL--NSKNHNIGDIIKVRITDVKISTLYGELV 468
           +   V      +   GD++ V +   +   L+G++V
Sbjct: 403 VDGAVFMNGETDLEPGDLVIVEVEAAEDYDLWGDVV 438


>gi|298208381|ref|YP_003716560.1| putative Fe-S oxidoreductase [Croceibacter atlanticus HTCC2559]
 gi|83848302|gb|EAP86172.1| putative Fe-S oxidoreductase [Croceibacter atlanticus HTCC2559]
          Length = 458

 Score =  353 bits (905), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 122/443 (27%), Positives = 211/443 (47%), Gaps = 17/443 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +     + GC++N  ++  +   F  +G+ RV   + AD+ V+NTC + E A +      
Sbjct: 9   KNVAFYTLGCKLNFSETSTIARSFEHEGFNRVEFHEHADIYVINTCSVTENADK------ 62

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R +++     K   D  V+  GC AQ + EE+      V++V+G    + +   L    
Sbjct: 63  -RFKDIVKKAQKINEDAFVIAIGCYAQLKPEELADVH-GVDLVLGATEKFNITNYLNDLT 120

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
                 D       + E      G Y+      AFL +Q+GCD  CT+C +P  RGI  S
Sbjct: 121 KN----DLGEVHSCEIEDADFYVGSYSIGDRTRAFLKVQDGCDYKCTYCTIPLARGISRS 176

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK---CTFSDLLYSLSEIKGLV 261
            ++  V+  A+++ +  + EI L G N+    GKG  G K    TF +L+ +L +++G+ 
Sbjct: 177 DTMENVLQNAKEIAEQDIKEIVLTGVNIG-DYGKGEFGNKRHEHTFLELVENLDKVEGIE 235

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           RLR ++  P  + +  I    + D  +P+ H+P+QSGS+ +LK M RR+    Y   + R
Sbjct: 236 RLRISSIEPNLLKNETIDFVSNSDKFVPHFHIPLQSGSNALLKLMRRRYNRELYVDRVAR 295

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I+SV P+  I  D IVGFPGET++ F  T + ++ +  +    F YS R  T  + M   
Sbjct: 296 IKSVMPNACIGVDVIVGFPGETEELFLETYNFLNDLDISYLHVFTYSERDNTLAAEMDGV 355

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           V   V+ +R   L+    +++ +F +  +   + VL E   KE G + G +     +   
Sbjct: 356 VPIKVRKKRSKMLRGLSAKKRRAFYETQINNSLTVLFEGENKE-GYIHGFTENYVKIKAP 414

Query: 442 SKNHNIGDIIKVRITDVKISTLY 464
              + +  +  V +T++    L 
Sbjct: 415 WNPNLVNTLQDVTLTEIDEDGLV 437


>gi|260170245|ref|ZP_05756657.1| putative Fe-S oxidoreductase [Bacteroides sp. D2]
 gi|315918608|ref|ZP_07914848.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313692483|gb|EFS29318.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 436

 Score =  352 bits (904), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 107/454 (23%), Positives = 201/454 (44%), Gaps = 35/454 (7%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEKVYS 82
           +   + + GC  N+ DS ++       GY   +  +    ++ V+NTC     A E+  +
Sbjct: 4   KTIDIITLGCSKNLVDSEQLMRQLEEVGYSVTHDTENPQGEIAVINTCGFIGDAKEESIN 63

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +      K      G    + V GC+++   +E+    P V+   G   +  L + L +
Sbjct: 64  MILEFAERKEE----GDLKKLFVMGCLSERYLKELAVEIPQVDKFYGKFNWKELLQDLGK 119

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
                      Y  E   ER       Y       A+L I EGCD+ C++C +P   G  
Sbjct: 120 V----------YHDELYIERTLTTPQHY-------AYLKISEGCDRKCSYCAIPIITGHH 162

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           IS+ + +++DE R L+  GV E  ++ Q +  + G     +K    +L+  +S+I G+  
Sbjct: 163 ISKPIEEILDEVRYLVSQGVKEFQVIAQELT-YYGIDRY-KKQMLPELIERISDIPGVEW 220

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R   ++P      L +   + D +  Y+ + +Q  SD +LK M R+ +  +  Q+I++ 
Sbjct: 221 IRLHYAYPAHFPTDLFRVMRERDNVCKYMDIALQHISDNMLKLMRRQVSKEDTYQLIEQF 280

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN-MLEQ 381
           R   P I + +  +VG PGET++DF    + V K+ + +  +F YS   GT  +    + 
Sbjct: 281 RKEVPGIHLRTTLMVGHPGETEEDFEDLKEFVRKVRFDRMGAFAYSEEEGTYAAETYEDS 340

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQS 437
           + + VK  RL  L    +      +   +G+ ++V+I++   E    +GR+    P +  
Sbjct: 341 IPQEVKQARLDELMDIQQGISAELSAEKIGKQMKVIIDRL--EGDYYIGRTEFDSPEVDP 398

Query: 438 VVLNS---KNHNIGDIIKVRITDVKISTLYGELV 468
            VL     +   IG   +V + +     LY +++
Sbjct: 399 EVLIDRSERELKIGQFYQVEVMNADDFDLYAKII 432


>gi|270296681|ref|ZP_06202880.1| MiaB-like tRNA modifying enzyme YliG [Bacteroides sp. D20]
 gi|270272668|gb|EFA18531.1| MiaB-like tRNA modifying enzyme YliG [Bacteroides sp. D20]
          Length = 432

 Score =  352 bits (904), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 109/454 (24%), Positives = 199/454 (43%), Gaps = 35/454 (7%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEKVYS 82
           +   + + GC  N+ DS  +       G+   +  +     + V+NTC     A E+  +
Sbjct: 4   KTIDIITLGCSKNLVDSEHLMRQLEEVGFHVTHDAERPKGQIAVINTCGFIGDAKEESIN 63

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +      K      G    + V GC+++   +E+    P V+   G   +  L + L +
Sbjct: 64  MILEFAQAKEE----GNLEKLYVMGCLSERYLKELAVEIPQVDKFYGKFNWRELLQDLGK 119

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           A          Y  E   ER       Y       A+L I EGCD+ C++C +P   G  
Sbjct: 120 A----------YHDELHIERTLTTPKHY-------AYLKISEGCDRKCSYCAIPIITGRH 162

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR + +++DE + L+  GV E  ++ Q +  + G  L  +K    +L+  +S+I G+  
Sbjct: 163 VSRPMEEILDEVKYLVARGVKEFQVIAQELT-YYGVDLY-KKQMLPELVERISDIPGVEW 220

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R   ++P      L +   + D +  Y+ + +Q  SD +L+ M R  T  E  ++I++ 
Sbjct: 221 IRLHYAYPAHFPTDLFRVMRERDNVCKYMDIALQHISDNMLQKMRRHVTKDETYKLIEQF 280

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT-PGSNMLEQ 381
           R   P I + +  +VG PGET+ DF    + V K+ + +  +F YS   GT   +   + 
Sbjct: 281 REEVPGIHLRTTLMVGHPGETEADFEELKEFVRKVRFDRMGAFAYSEEEGTYAAAEYEDS 340

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQS 437
           + + VK  RL  L    +      +   VG+ ++V+I++   E    +GR+    P +  
Sbjct: 341 IPQEVKQARLDELMSIQQGISGELSAEKVGRQMKVIIDRL--EGEYYIGRTEFDSPEVDP 398

Query: 438 VVLNSKNHN---IGDIIKVRITDVKISTLYGELV 468
            VL  +      IG+   V I +     L+G ++
Sbjct: 399 EVLIERGDRALHIGNFYHVEIVNSDDFDLFGRII 432


>gi|269837471|ref|YP_003319699.1| MiaB-like tRNA modifying enzyme YliG [Sphaerobacter thermophilus
           DSM 20745]
 gi|269786734|gb|ACZ38877.1| MiaB-like tRNA modifying enzyme YliG [Sphaerobacter thermophilus
           DSM 20745]
          Length = 466

 Score =  352 bits (904), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 111/459 (24%), Positives = 209/459 (45%), Gaps = 26/459 (5%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + + F + + GC  N  DS  +  +   QG   V   +DA ++V+NTC     + ++   
Sbjct: 1   MNESFHIVTLGCSKNQVDSEGIARVLSQQGMTPVARPEDARVLVVNTCGFLAASRQESVG 60

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +  +   +        D +V+ AGC+A  +          V+ ++  + +  +  ++  
Sbjct: 61  VINELLETRR------PDQVVIAAGCMASLDQHR-QEIPEGVDAILSTREWANIGHVV-- 111

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
              G+ +   D   +  F+   ++     R  G +A++ I +GCD  C FCV+P  +G +
Sbjct: 112 ---GRLLGYEDIPPQPPFDPAGMLTSFTRRDAGPSAYVKIADGCDHGCHFCVIPLIKGRQ 168

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE-IKGLV 261
           +S+  S V+ E R+L+D G  E+ L+ Q+     G  L G K     LL  ++E +  L 
Sbjct: 169 VSKRPSDVIREIRELVDGGTKEVILVAQDT-IRYGADL-GIKNGLPGLLRMIAEEVPDLP 226

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
            LR    +P  ++  L+ A  +  + +PYL +P+Q     +L+ M R  +    R++ID 
Sbjct: 227 WLRMLYIYPSPLTLRLVDAMTEHPMFVPYLDMPIQHADPTVLRRMGRPSSIDMTRRLIDH 286

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
            R+  PD+ + +  IVG+PGET++ F+   D V ++ +     F YS    T  + +   
Sbjct: 287 ARNRLPDVTMRTTLIVGYPGETEEQFQRLYDFVAEMEFDHVGVFTYSYEPNTKSALLDNP 346

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-------KHGKEKGKLVGR--- 431
           V       R   + +  +   +  N A VG+ +EVL+E       + G+ +   VGR   
Sbjct: 347 VPPEEAEARRAAIMELQQGISLKKNQALVGRTLEVLVEAVGEMEDERGRTEPISVGRARR 406

Query: 432 -SPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
            +P +  +V       +G++I+ R+T      L+     
Sbjct: 407 HAPEVDGLVFIPGALPVGELIQARVTAASPYDLWATPAA 445


>gi|13470719|ref|NP_102288.1| ribosomal protein S12 methylthiotransferase [Mesorhizobium loti
           MAFF303099]
 gi|75544062|sp|Q98MN9|RIMO_RHILO RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|14021462|dbj|BAB48074.1| mlr0499 [Mesorhizobium loti MAFF303099]
          Length = 437

 Score =  352 bits (904), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 136/456 (29%), Positives = 212/456 (46%), Gaps = 36/456 (7%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R    S GC   + DS R+     ++GYE     D ADL+V+NTC   + A ++  + +G
Sbjct: 5   RVSFVSLGCPKALVDSERIITRLRAEGYEIARKHDGADLVVVNTCGFLDSARDESLNAIG 64

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                         +  V+V GC+  AE + I  + P V  + GPQ Y  +   +  A  
Sbjct: 65  SA---------LSENGRVIVTGCLG-AEPDVIREKHPNVLAITGPQAYESVMAAVHEAAP 114

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                  D           +   G        A+L I EGC+  CTFC++P  RG  +SR
Sbjct: 115 PSHDPYIDL----------LPPQGVKLTPRHYAYLKISEGCNNRCTFCIIPALRGDLVSR 164

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAW-----RGKGLDGEK---CTFSDLLYSLSEI 257
             + V+ EA KL   GV E+ ++ Q+ +A+         + G++     F DL   L ++
Sbjct: 165 PAADVLREAEKLAKAGVKELLVISQDTSAYGIDIKYQTSMFGDREVRAKFLDLSEELGKL 224

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
              VR+ Y   +P       + A G    ++PYL +P Q  S ++LK+M R     +  +
Sbjct: 225 GIWVRMHYVYPYPHVADVIPLMAEG---KILPYLDIPFQHASPQVLKNMRRPAHGEKTLE 281

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
            I   R V PD+AI S FIVGFPGETD+DF   +D +D+    +A  FKY P  G   ++
Sbjct: 282 RIRGWRDVCPDLAIRSTFIVGFPGETDEDFEMLLDWLDEAKIDRAGCFKYEPVKGARSND 341

Query: 378 M-LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKH--GKEKGKLVGRSPW 434
           + LEQV ++VK  R     ++ ++   +     VG+ + VLI++      KG+    +P 
Sbjct: 342 LGLEQVPQDVKEARWHRFMQRQQKISATQLAKKVGKRLPVLIDEAHGTSAKGRTKYDAPE 401

Query: 435 LQS-VVLNSKNHN-IGDIIKVRITDVKISTLYGELV 468
           +   V + S+     GDI+ V+I       LYG  V
Sbjct: 402 IDGSVHIQSRRPMRAGDIVTVKIERADAYDLYGSAV 437


>gi|160889557|ref|ZP_02070560.1| hypothetical protein BACUNI_01981 [Bacteroides uniformis ATCC 8492]
 gi|156861074|gb|EDO54505.1| hypothetical protein BACUNI_01981 [Bacteroides uniformis ATCC 8492]
          Length = 432

 Score =  352 bits (904), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 109/454 (24%), Positives = 198/454 (43%), Gaps = 35/454 (7%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEKVYS 82
           +   + + GC  N+ DS  +       G+   +  +     + V+NTC     A E+  +
Sbjct: 4   KTIDIITLGCSKNLVDSEHLMRQLEEVGFHVTHDAERPKGQIAVINTCGFIGDAKEESIN 63

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +      K      G    + V GC+++   +E+    P V+   G   +  L + L +
Sbjct: 64  MILEFAQAKEE----GNLEKLYVMGCLSERYLKELAVEIPQVDKFYGKFNWRELLQDLGK 119

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           A          Y  E   ER       Y       A+L I EGCD+ C++C +P   G  
Sbjct: 120 A----------YHDELHIERTLTTPKHY-------AYLKISEGCDRKCSYCAIPIITGRH 162

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR + +++DE + L+  GV E  ++ Q +  + G  L  +K    +L+  +S+I G+  
Sbjct: 163 VSRPMEEILDEVKYLVARGVKEFQVIAQELT-YYGVDLY-KKQMLPELVERISDIPGVEW 220

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R   ++P      L +   + D +  Y+ + +Q  SD +L+ M R  T  E  ++I++ 
Sbjct: 221 IRLHYAYPAHFPADLFRVMRERDNVCKYMDIALQHISDNMLQKMRRHVTKDETYKLIEQF 280

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT-PGSNMLEQ 381
           R   P I + +  +VG PGET+ DF    + V K+ + +  +F YS   GT   +   + 
Sbjct: 281 REEVPGIHLRTTLMVGHPGETEADFEELKEFVRKVRFDRMGAFAYSEEEGTYAAAEYEDS 340

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQS 437
           + + VK  RL  L    +      +   VG+ ++V+I++   E    +GR+    P +  
Sbjct: 341 IPQEVKQARLDELMSIQQGISGELSAEKVGRQMKVIIDRL--EGEYYIGRTEFDSPEVDP 398

Query: 438 VVLNSKNHN---IGDIIKVRITDVKISTLYGELV 468
            VL  +      IG+   V I       L+G ++
Sbjct: 399 EVLIERGDRALHIGNFYHVEIVKSDDFDLFGRII 432


>gi|291276480|ref|YP_003516252.1| tRNA modification enzyme MiaB [Helicobacter mustelae 12198]
 gi|290963674|emb|CBG39506.1| Putative tRNA modification enzyme MiaB [Helicobacter mustelae
           12198]
          Length = 417

 Score =  352 bits (904), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 142/427 (33%), Positives = 232/427 (54%), Gaps = 20/427 (4%)

Query: 44  MEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLV 103
           + ++   +GYE      +ADLI++NTC +REK   K++S +G+   +K +  K      +
Sbjct: 2   ISELQKKEGYELTQDAKEADLILINTCSVREKPERKLFSEIGQFTKIKKNGAK------I 55

Query: 104 VVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERL 163
            V GC A   GE+I++R+P V+ V+G +   ++ E+L R +  +  VD D S        
Sbjct: 56  GVCGCTASHMGEQIIKRAPSVDFVLGARNVSKITEVLHRPKAVEVAVDYDDS-------- 107

Query: 164 SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVC 223
                    + G+ A L I  GCDK C +C+VP+TRG EIS  L  ++ EA KL+  G  
Sbjct: 108 -TYVYDIPHQAGIKALLNISIGCDKKCAYCIVPHTRGKEISIPLDLLLTEANKLVSRGTK 166

Query: 224 EITLLGQNVNAWRGKG-LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHG 282
           EI LLGQNVN +  +  +      F+ LL+ L +I GL R+R+T+ HP  M+D  ++   
Sbjct: 167 EILLLGQNVNNYGARFSVPHAPINFTGLLHELGKIDGLERIRFTSPHPLHMNDEFLEEFA 226

Query: 283 DLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGE 342
               +   +H+P+QSGS  ILK+M R +T   Y   I+++R++ P++ IS+D IVGFPGE
Sbjct: 227 QNPKVCKSIHIPLQSGSSAILKAMRRGYTKEWYLNRIEKLRALVPEVGISTDIIVGFPGE 286

Query: 343 TDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM--LEQVDENVKAERLLCLQKKLRE 400
           +D DF+ T+D+++ + +   +SF YSPR  T  ++     +V + V A RL  LQ + +E
Sbjct: 287 SDADFQDTLDVLEAVRFDTMYSFVYSPRPYTESASWGAEREVPKEVAARRLAMLQNRHKE 346

Query: 401 QQVSFNDACVGQIIEVLIE--KHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDV 458
             V      +G++  +L+E  K    +    GRS   + + +     ++G  + V +   
Sbjct: 347 ILVEDAKKEIGKVYTILVENNKQSPVETFSEGRSDNAKLIRVYDCFLDMGSFVPVEVIAN 406

Query: 459 KISTLYG 465
              +L G
Sbjct: 407 DGGSLIG 413


>gi|317480049|ref|ZP_07939161.1| MiaB-like tRNA modifying enzyme YliG [Bacteroides sp. 4_1_36]
 gi|316903791|gb|EFV25633.1| MiaB-like tRNA modifying enzyme YliG [Bacteroides sp. 4_1_36]
          Length = 432

 Score =  352 bits (904), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 109/454 (24%), Positives = 199/454 (43%), Gaps = 35/454 (7%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEKVYS 82
           +   + + GC  N+ DS  +       G+   +  +     + V+NTC     A E+  +
Sbjct: 4   KTIDIITLGCSKNLVDSEHLMRQLEEVGFHVTHDAERPKGQIAVINTCGFIGDAKEESIN 63

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +      K      G    + V GC+++   +E+    P V+   G   +  L + L +
Sbjct: 64  MILEFAQAKEE----GNLEKLYVMGCLSERYLKELAVEIPQVDKFYGKFNWRELLQDLGK 119

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           A          Y  E   ER       Y       A+L I EGCD+ C++C +P   G  
Sbjct: 120 A----------YHDELHIERTLTTPKHY-------AYLKISEGCDRKCSYCAIPIITGRH 162

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR + +++DE + L+  GV E  ++ Q +  + G  L  +K    +L+  +S+I G+  
Sbjct: 163 VSRPMEEILDEVKYLVARGVKEFQVIAQELT-YYGVDLY-KKQMLPELVERISDIPGVEW 220

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R   ++P      L +   + D +  Y+ + +Q  SD +L+ M R  T  E  ++I++ 
Sbjct: 221 IRLHYAYPAHFPADLFRVMRERDNVCKYMDIALQHISDNMLQKMRRHVTKDETYKLIEQF 280

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT-PGSNMLEQ 381
           R   P I + +  +VG PGET+ DF    + V K+ + +  +F YS   GT   +   + 
Sbjct: 281 REEVPGIHLRTTLMVGHPGETEADFEELKEFVRKVRFDRMGAFAYSEEEGTYAAAEYEDS 340

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQS 437
           + + VK  RL  L    +      +   VG+ ++V+I++   E    +GR+    P +  
Sbjct: 341 IPQEVKQARLDELMSIQQGISGELSAEKVGRQMKVIIDRL--EGEYYIGRTEFDSPEVDP 398

Query: 438 VVLNSKNHN---IGDIIKVRITDVKISTLYGELV 468
            VL  +      IG+   V I +     L+G ++
Sbjct: 399 EVLIERGDRALHIGNFYHVEIVNSDDFDLFGRII 432


>gi|312115373|ref|YP_004012969.1| MiaB-like tRNA modifying enzyme YliG [Rhodomicrobium vannielii ATCC
           17100]
 gi|311220502|gb|ADP71870.1| MiaB-like tRNA modifying enzyme YliG [Rhodomicrobium vannielii ATCC
           17100]
          Length = 448

 Score =  352 bits (904), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 126/472 (26%), Positives = 203/472 (43%), Gaps = 40/472 (8%)

Query: 13  MVSQIVDQCI--VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC 70
           M   + ++     P+  FV S GC   + DS R+     ++GY      D AD++V+NTC
Sbjct: 1   MPKPVAERAASNAPKVGFV-SLGCAKALVDSERILTRLRAEGYVISPDYDGADVVVVNTC 59

Query: 71  HIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGP 130
              + A  +    +G              +  V+V GC    +   I    P V  V GP
Sbjct: 60  GFLDSAKAESLDAIGEA---------MAENGRVIVTGCFGVEDR-RIRDSFPGVLAVTGP 109

Query: 131 QTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190
             Y  +   +  A         D           +   G        A+L I EGC   C
Sbjct: 110 HQYDAVVNAIHAAAPAPHAPFLDL----------VPRAGLRLTPPHYAYLKISEGCHNRC 159

Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE------- 243
           +FC++P  RG   SR  + V+ EA  L++ G  E+ ++ Q+ +A  G  L          
Sbjct: 160 SFCIIPQLRGDLASRPAADVLAEAEALVEGGAKELLVISQDTSA-YGLDLKYTASDWRGS 218

Query: 244 --KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
             K   ++L  +L  +   VRL Y   +P      L+    +   ++PYL +P Q  S  
Sbjct: 219 PVKARLTELCDALGSLGAWVRLHYVYPYPHVD--ELLPLMAE-GKILPYLDIPFQHASLS 275

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
           +LK+M R     +  + I R R   PD+ + S FIVGFPGET++DF   +D + +    +
Sbjct: 276 VLKAMRRPANQEKTLETIRRWREAVPDLGLRSTFIVGFPGETEEDFAVLLDWLREAKLTR 335

Query: 362 AFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKH 421
              FKY    G P   +  QV E+VKAER   L +  RE   +     VG+ I+V+I++ 
Sbjct: 336 VGCFKYENVEGAPSRALDGQVPEDVKAERFARLMEVQREVSAAVLAGQVGKTIDVIIDEV 395

Query: 422 GKEKGKLVG--RSPWLQS-VVL-NSKNHNIGDIIKVRITDVKISTLYGELVV 469
            ++     G   +P +   V+  ++ +   GD+++  I +     L+ E V 
Sbjct: 396 DEDGATGRGPWDAPEIDGSVLFEDAGDMEPGDMVRATIIEADDYDLWAEPVA 447


>gi|323137219|ref|ZP_08072298.1| MiaB-like tRNA modifying enzyme YliG [Methylocystis sp. ATCC 49242]
 gi|322397577|gb|EFY00100.1| MiaB-like tRNA modifying enzyme YliG [Methylocystis sp. ATCC 49242]
          Length = 449

 Score =  352 bits (904), Expect = 7e-95,   Method: Composition-based stats.
 Identities = 136/473 (28%), Positives = 214/473 (45%), Gaps = 41/473 (8%)

Query: 13  MVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHI 72
           M   +      P+  FV S GC   + DS R+     ++GYE     + AD++V+NTC  
Sbjct: 1   MQEDLKPNSAAPRVSFV-SLGCPKALVDSERIVTRLRAEGYELARRHEGADVVVVNTCGF 59

Query: 73  REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT 132
            + A  +    +G   +             V+V GC+  AE E I  R P V  + GPQ 
Sbjct: 60  LDSAKAESLEAIGAALSENGK---------VIVTGCMG-AEPEAIAERFPEVLAITGPQQ 109

Query: 133 YYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTF 192
           Y  + E + RA              D F  L + + G        A+L I EGCD  C+F
Sbjct: 110 YESVVEAVHRA---------VAPAHDPFVDL-VPEQGVKLTPRHYAYLKISEGCDNSCSF 159

Query: 193 CVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-----RGKGLDGEKC-- 245
           C++P+ RG  +SR  ++V+ EA KL   GV E+ ++ Q+ +A+       + + G++   
Sbjct: 160 CIIPHLRGPLVSRPAAEVLREAEKLARAGVKELLVISQDTSAYGRDLRYVESMLGDRAVR 219

Query: 246 -TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304
             F DL   L E+    RL Y   +P       +   G    ++PYL +P Q  +  +LK
Sbjct: 220 ARFLDLARELGELGLWTRLHYVYPYPHVDEVIGLMTEG---KILPYLDIPFQHAAPNVLK 276

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
           +M R     +    I   R+  PD+A+ S FIVGFPGET++DF+  +D +D+    +A +
Sbjct: 277 AMKRPANEEKTLARIKAWRAACPDLALRSTFIVGFPGETEEDFQLLLDWLDEAEIDRAGA 336

Query: 365 FKYSPRLGTPGSNM-LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK 423
           FKY P  G P + + L  V E VK  R     +K +          VG+ ++V+I++ G 
Sbjct: 337 FKYEPVSGAPANELGLAPVPEEVKEARWKRFMEKQQAVSARLMKRKVGKRLQVIIDEAGG 396

Query: 424 ------EKGKLVGRSPWLQSVVLNSK--NHNIGDIIKVRITDVKISTLYGELV 468
                  KG+    +P +              GDI+ V++       +YG  V
Sbjct: 397 GPSGALAKGRTKADAPQIDGAAFVESRRPLRPGDIVTVKVDRADAYDVYGAAV 449


>gi|238927738|ref|ZP_04659498.1| 2-methylthioadenine synthetase [Selenomonas flueggei ATCC 43531]
 gi|238884454|gb|EEQ48092.1| 2-methylthioadenine synthetase [Selenomonas flueggei ATCC 43531]
          Length = 519

 Score =  352 bits (904), Expect = 7e-95,   Method: Composition-based stats.
 Identities = 138/443 (31%), Positives = 222/443 (50%), Gaps = 15/443 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R    + GC++N +++  ME +F ++GYE V   + AD+ V+NTC +   +  K    + 
Sbjct: 92  RAAFMTLGCKVNQFETETMEGLFRARGYEIVPFEERADVYVINTCSVTHLSDRKSRQIIR 151

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R   +            + VAGC AQ   EE+      V VV+G +   R+ + +E A  
Sbjct: 152 RAARM-------NPTACIAVAGCYAQVSPEEVRG-LEGVRVVIGTEERARIVDYVEEALH 203

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
              VV+    V        I   G   +    AFL I++GC  FC+FC++PY RG   SR
Sbjct: 204 ADGVVEEITDVMQARAFEDIPLHGVPHR--TRAFLKIEDGCQNFCSFCIIPYARGPVKSR 261

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            L+ V  E  KL   G  E+ L G ++ A  G  L  ++ T +D   +    K + RLR 
Sbjct: 262 PLAAVAREMEKLAAAGFREVVLTGIHLGA-YGIDLP-QRPTLADACRTALRTKEVRRLRL 319

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
            +    ++S+ L+          P+LHLP+Q+GSD +L++MNRR+    + Q++  +R  
Sbjct: 320 GSLESVELSEDLLSLVRTEPRFAPHLHLPLQAGSDNVLRAMNRRYDTAAFAQLLADVRRA 379

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P  AIS+D IVGFPGET++DF A +D V  +G+A+   F YS R GTP +   +Q+   
Sbjct: 380 VPGAAISTDIIVGFPGETEEDFTAGLDFVRAMGFARMHVFPYSARRGTPAARRTDQIAPP 439

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445
           V+ ER   +Q    E   +++ A +G + EVL E   +  G   G +     V  ++   
Sbjct: 440 VRRERAARMQALAEEMAEAYHRAALGTVDEVLFE--TEHDGVADGLTGTYIRVYTDAAVP 497

Query: 446 NIGDIIKVRITDVKISTLYGELV 468
             G+++ +R+  +    ++GE V
Sbjct: 498 R-GELVPMRLVRLCRDGVWGERV 519


>gi|23013648|ref|ZP_00053519.1| COG0621: 2-methylthioadenine synthetase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 448

 Score =  352 bits (904), Expect = 7e-95,   Method: Composition-based stats.
 Identities = 125/461 (27%), Positives = 207/461 (44%), Gaps = 37/461 (8%)

Query: 21  CIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKV 80
            +   +  + S GC   + DS R+     ++GY+   S D AD++++NTC   + A  + 
Sbjct: 2   SLTQPKVGIVSLGCSKALVDSERILTKLRAEGYDISGSYDGADVVIVNTCGFLDSARAES 61

Query: 81  YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140
              +G                 V+V GC+   + + I    P V  V GP  Y  + E +
Sbjct: 62  LEAIGEALAENGK---------VIVTGCMG-GDEKAIRGAHPSVLAVSGPHQYQAVVEAV 111

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
             A                 +   +   G +      A+L I EGC+  C+FC++P  RG
Sbjct: 112 HAA----------IPPLHDPKLSLVPPEGLHLTPHHYAYLKISEGCNNSCSFCIIPDIRG 161

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE---------KCTFSDLL 251
             +SRS + V+ EA +L ++GV E+ ++ Q+ +A  G  L            +   +DL 
Sbjct: 162 PLVSRSAADVLGEAERLAESGVRELLVISQDTSA-YGLDLRHAESSWRGRPVRAHLTDLA 220

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
            +L E+   +R+ Y   +P       + A G    ++PYL +P Q  S  +LK+M R   
Sbjct: 221 RALGELGIWIRMHYVYPYPHVDEIIPLMAEG---KILPYLDIPFQHASPNVLKAMRRPAN 277

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
             +    I   R   PD+ + S FIVGFPGETDDDF + ++ +D+    +   FKY    
Sbjct: 278 QEKVLGRIRSWRETCPDLTLRSTFIVGFPGETDDDFESLLEWMDEAQLDRVGCFKYEDVK 337

Query: 372 GTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLV 429
           G P +   +QVDE+VK ER     +  R+       A  G  +EV+I++  +E   G+  
Sbjct: 338 GAPSNAFADQVDEDVKEERHQRFMEAARQIADERGAAKEGTRVEVIIDEVDEEGAIGRSK 397

Query: 430 GRSPWLQSVVL--NSKNHNIGDIIKVRITDVKISTLYGELV 468
             SP +   V      +   GD++ V +   +   L+G++V
Sbjct: 398 ADSPEVDGAVFMNGETDLEPGDLVIVEVEAAEDYDLWGDVV 438


>gi|297620406|ref|YP_003708543.1| MiaB-like tRNA modifying enzyme [Waddlia chondrophila WSU 86-1044]
 gi|297375707|gb|ADI37537.1| MiaB-like tRNA modifying enzyme [Waddlia chondrophila WSU 86-1044]
          Length = 458

 Score =  352 bits (903), Expect = 7e-95,   Method: Composition-based stats.
 Identities = 118/464 (25%), Positives = 214/464 (46%), Gaps = 25/464 (5%)

Query: 14  VSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIR 73
           V+   +  +   +    S GC  N+ DS  M  +    GYE   ++++AD IV+NTC   
Sbjct: 11  VAASPNFSLGGNKISFISLGCPRNLVDSEVMLGILLKAGYEPSQTLEEADHIVINTCGFL 70

Query: 74  EKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTY 133
           + + ++    +      +    K      V+V GC+ Q+  E I      V+  +G    
Sbjct: 71  KASRDESLQTINDALKQRKEGAK------VIVTGCMVQSHKEMITSP---VDYFLGSGDV 121

Query: 134 YRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC 193
             + + +     G++V      +E      +I            A+L I EGC K C +C
Sbjct: 122 EGILDAVRSGEKGEQVTSAKSYLEAGEVPRTIS------TPNHYAYLKIAEGCRKQCAYC 175

Query: 194 VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT-FSDLLY 252
           ++P  +G   S+  +QV+ E R L++ G  E+ L+ Q++  W GK +  ++      LL 
Sbjct: 176 IIPTIKGRLKSKPAAQVLKEFRVLLNQGAKEVILIAQDLGDW-GKDIGFKRTDGLIHLLK 234

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
            L +++G   LR    +P +++  LI+   +   + PY+ +P+Q  +D +LKSM+R    
Sbjct: 235 ELLKVEGDYWLRLMYLYPDEITGELIQLMKEEPRICPYVDMPIQHVNDNMLKSMHRATHR 294

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
            +    I+ +R   PDI+I +  IVGFPGET++ F      +++        F++S   G
Sbjct: 295 AQIIGTIETMRKQIPDISIRTSLIVGFPGETEEQFLELAQFLEEQRLDNVGVFQFSREPG 354

Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-----GK 427
           +    + EQ+ E VK +R   L +  +          VG++++V+IE +  E      G+
Sbjct: 355 SHAYGLPEQIAEEVKQDRYDRLMQIQQHVVEQEMRKWVGRVLDVVIEGYHPETRVLMVGR 414

Query: 428 LVGRSPWLQSVVLNSKNHNI---GDIIKVRITDVKISTLYGELV 468
             G+ P +   VL + +  +   G   +V ITD+    L G ++
Sbjct: 415 HRGQCPEIDGQVLINDSRGVDAFGKRYRVEITDISGYDLVGRVI 458


>gi|257063782|ref|YP_003143454.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Slackia
           heliotrinireducens DSM 20476]
 gi|256791435|gb|ACV22105.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Slackia
           heliotrinireducens DSM 20476]
          Length = 446

 Score =  352 bits (903), Expect = 7e-95,   Method: Composition-based stats.
 Identities = 118/446 (26%), Positives = 205/446 (45%), Gaps = 26/446 (5%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
               + GC  N  DS  M+    S G+  V+  +DAD +++NTC   + A E+    +  
Sbjct: 21  VNFITLGCAKNEVDSADMQRRLVSAGFAIVDDAEDADAVIVNTCSFIQAAIEESIDVILE 80

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           +  L N      G   ++VAGC+    G+++       +  V       + E+++R    
Sbjct: 81  VAGLAN---IADGSSKLIVAGCMPARFGDDLESELNEASAFVPCSKEDDIVEVVQRTLGV 137

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
                    VE                    A++ I +GC++FC+FC +PY RG   S  
Sbjct: 138 NPAPFARVDVE---------------SGPAAAYVKISDGCNRFCSFCSIPYIRGRYHSFP 182

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
             ++     + I  G  EITL+GQ+     G   + EK T + LL +L+E       R  
Sbjct: 183 YERIRASVEQCIAEGSVEITLIGQDTG-CWGSDFE-EKSTTAQLLSNLAEEFPDTWFRIM 240

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
              P  ++D L+ A    D +  YL +P+Q  +  +LKSM R+ +A E+ ++++RIR+  
Sbjct: 241 YVEPDGITDELLDAIAAHDNVCDYLDMPLQHANPELLKSMRRKGSAPEFLKLLERIRTRV 300

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           P I + +  I GFPGET++ F   M+ +++  +     F YS   GT   ++ +QV+E +
Sbjct: 301 PGITLRTTLITGFPGETEEAFDELMEFLEEADFDYVGVFPYSREEGTRAYDLPDQVEEEL 360

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVVLNS 442
           K  R   ++              +G+ ++VL+    +E G+L GR    +P +  VV   
Sbjct: 361 KVARAQEVRDLCDAVGSVHTADRIGKELDVLVLG-AEEDGQLFGRAMCQAPDVDGVVYVD 419

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
               +G+I++V I D     + GE++
Sbjct: 420 GGE-VGEIVRVTIVDTLAYDMEGEII 444


>gi|163788919|ref|ZP_02183364.1| possible 2-methylthioadenine synthetase [Flavobacteriales bacterium
           ALC-1]
 gi|159876156|gb|EDP70215.1| possible 2-methylthioadenine synthetase [Flavobacteriales bacterium
           ALC-1]
          Length = 442

 Score =  352 bits (903), Expect = 8e-95,   Method: Composition-based stats.
 Identities = 126/439 (28%), Positives = 213/439 (48%), Gaps = 17/439 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++    + GC++N  ++  +   F  +G+ RV+  ++AD+ V+NTC + E A +      
Sbjct: 4   KKVAFYTLGCKLNFSETSTIARSFKDEGFARVDFKENADIYVINTCSVTENADK------ 57

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R + +     K   D  V   GC AQ + EE+   +  V++V+G    +++ + L    
Sbjct: 58  -RFKTIVKQAQKVNPDAFVAAIGCYAQLKPEELADVN-GVDLVLGATEKFKITDYLNDLT 115

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
                 D       + E      G Y+      AFL +Q+GCD  CT+C +P  RGI  S
Sbjct: 116 KN----DFGEVHSCEIEDADFYVGSYSIGDRTRAFLKVQDGCDYKCTYCTIPLARGISRS 171

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK---CTFSDLLYSLSEIKGLV 261
            +++ V++ A+++ + G+ EI L G N+    GKG  G K    TF DL+  L +++G+ 
Sbjct: 172 DTMTNVLNNAKEISEQGIKEIVLTGVNIG-DYGKGEFGNKKHEHTFLDLVTELDKVEGIE 230

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           RLR ++  P  + +  I         +P+ H+P+QSGS+ ILK M RR+    Y   + +
Sbjct: 231 RLRISSIEPNLLKNETIDLVSKSRAFVPHFHVPLQSGSNDILKKMKRRYMKELYVDRVSK 290

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I+ V P   I  D IVGFPGETD+ F  T + + ++  +    F YS R  T  + M   
Sbjct: 291 IKEVMPHACIGVDVIVGFPGETDEHFLETYNFLKELDISYLHVFTYSERDNTEAAEMDGV 350

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           V +NV+A+R   L+    +++ +F +  +     VL E   KE G + G +     V   
Sbjct: 351 VSKNVRAKRSKMLRGLSAKKRRAFYEKQLNTDRTVLFEGENKE-GYIHGFTENYVKVKAP 409

Query: 442 SKNHNIGDIIKVRITDVKI 460
                +  + KV +T +  
Sbjct: 410 WNPELVNTLHKVHLTKIDE 428


>gi|119505065|ref|ZP_01627141.1| hypothetical protein MGP2080_15289 [marine gamma proteobacterium
           HTCC2080]
 gi|119459047|gb|EAW40146.1| hypothetical protein MGP2080_15289 [marine gamma proteobacterium
           HTCC2080]
          Length = 440

 Score =  352 bits (903), Expect = 8e-95,   Method: Composition-based stats.
 Identities = 116/454 (25%), Positives = 198/454 (43%), Gaps = 33/454 (7%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P++    S GC   + DS R+     S GYE   + +DA ++++NTC   + A  +    
Sbjct: 5   PEKVGFISLGCPKALVDSERILTQLRSDGYEVTPNYEDAGVVIVNTCGFIDSAKAESLEA 64

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAE-GEEILRRSPIVNVVVGPQTYYRLPELLER 142
           +               +  V+V GC+ + +    I    P +  + GP  Y  +   +  
Sbjct: 65  ISEAVQ---------ENGRVLVTGCMGKGDDARRIQDLHPNILGISGPAAYEEVVGAVHE 115

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
                       + +    R  I   G        A+L I EGC+  C FC++P  RG  
Sbjct: 116 V--------IPMTRQPDPLRDLIPAQGVKLTPRHYAYLKISEGCNHRCKFCIIPSMRGDL 167

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYSL 254
           +SR +  ++ EA  L+  GV E+ ++ Q+ +A+      R    +G   K     L  +L
Sbjct: 168 VSRPIGDIMREAEALVRAGVRELLVISQDTSAYGVDLKYRTDFWEGRPLKSDLLTLAKTL 227

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
            E    VRL Y   +P   +   + A      ++PYL +P+Q GS  +L+ M R   A +
Sbjct: 228 GEFGIWVRLHYVYPYPNVDALIPLMA---EKKILPYLDVPLQHGSPSVLQRMKRPAAAEK 284

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
             + I R R + PDI + S FIVG+PGET+ +F+  +D +D+    +A  F+YSP  G  
Sbjct: 285 TLERIKRWRDICPDITLRSTFIVGYPGETEAEFQELLDFIDEAQIDRAGCFQYSPVKGAT 344

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRS 432
            + +   V E VK ER      + +    +     VG    VLI++   ++  G+ +  +
Sbjct: 345 ANELPNHVSETVKQERWDAFMARQQTISANKLAKKVGTTQAVLIDEVEGDRAIGRSIADA 404

Query: 433 PWLQSVVL--NSKNHNIGDIIKVRITDVKISTLY 464
           P +  VV          GD+++  ++      L+
Sbjct: 405 PEIDGVVHLTAPPGLKPGDLVEGEVSSADDYDLW 438


>gi|260893774|ref|YP_003239871.1| MiaB-like tRNA modifying enzyme YliG [Ammonifex degensii KC4]
 gi|260865915|gb|ACX53021.1| MiaB-like tRNA modifying enzyme YliG [Ammonifex degensii KC4]
          Length = 436

 Score =  352 bits (903), Expect = 8e-95,   Method: Composition-based stats.
 Identities = 122/447 (27%), Positives = 202/447 (45%), Gaps = 19/447 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC  N  D+  M  +    G+     +  A +I++NTC   E A  +    + 
Sbjct: 2   KVAAVSLGCPKNRVDTETMLGLLREAGFSPTLDLSSAQVILVNTCAFIEPAQREAVVTIL 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +   K          +++V GC+ +  G  +L   P ++ ++G     R+   +  A  
Sbjct: 62  ELAQQKKKGQ------VLLVTGCLVELFGSSLLEEMPEIDGLIGTGALDRVVSAVGEALE 115

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G+R V            L              A+L I EGC   C+FC +PY RG   SR
Sbjct: 116 GRRPVYLA-----PPGFLGNGTPRLLSTPSYYAYLKIAEGCSHRCSFCRIPYLRGPYRSR 170

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
              +++ EA +L + GV E+ L+ Q+  +W G  L G + + + LL  L+ ++ +  +R 
Sbjct: 171 PPEEILREAAELAERGVKELILVAQDTTSW-GIDLYG-RPSLALLLRELAALEKVKWIRI 228

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
             +HP  ++D L++     D +  YL LP+Q  S RILK M R     +  +++ RIR  
Sbjct: 229 LYAHPASITDELLEVMAKEDKICRYLDLPLQHLSPRILKRMGRP--LIDPHRLVQRIRKA 286

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P + + + FIVGFPGE  +DF   +  V ++G+ +   F Y    GTP +++ EQV E 
Sbjct: 287 LPGVVLRTTFIVGFPGEEKEDFALLLRGVRELGFERIGIFPYYREEGTPAASLPEQVPEE 346

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE--KGKLVGRSPWLQSVVL--N 441
            K  R   L    R+         VG+ I VL+E    +  +G+  G +P +   V    
Sbjct: 347 EKRRRYRRLAFLARKLSRWRLRRLVGKEITVLVEGEKGKFYRGRSEGDAPEIDGWVYLRT 406

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
            K    GD +  R+T  +   L  E++
Sbjct: 407 DKPLQPGDFVHARVTKARTYDLEAEVL 433


>gi|226324639|ref|ZP_03800157.1| hypothetical protein COPCOM_02424 [Coprococcus comes ATCC 27758]
 gi|225207087|gb|EEG89441.1| hypothetical protein COPCOM_02424 [Coprococcus comes ATCC 27758]
          Length = 441

 Score =  352 bits (903), Expect = 8e-95,   Method: Composition-based stats.
 Identities = 125/428 (29%), Positives = 222/428 (51%), Gaps = 15/428 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++  + + GC++N Y++  M+++    GYE V   D AD+ V+NTC +   A  K    +
Sbjct: 2   KKAALHNLGCKVNAYETEAMQELLEKNGYEIVPFHDLADVYVINTCSVTNMADRKSRQMI 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R R       K+  D ++V AGC  QA+ + +      +++V+G      L  LLE   
Sbjct: 62  HRAR-------KQNPDAVIVAAGCYVQAQAD-MGELDENIDIVIGNNKKKDLIRLLEEY- 112

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRK-RGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           F + + +    V D            +R      A+L +Q+GC++FCT+C++PY RG   
Sbjct: 113 FKEDIPEQMQEVIDINHTFEYESLHLSRTAEHTRAYLKVQDGCNQFCTYCIIPYARGRVR 172

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAW--RGKGLDGEKC-TFSDLLYSLSEIKGL 260
           SR    VV+E R L ++G  E+ L G +++++    K  +G++     DL+ ++  ++G+
Sbjct: 173 SRKKEDVVEEVRTLAEHGYQEVVLTGIHLSSYGLEWKDENGKQTEGLLDLIRAVHGVEGI 232

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R  +  PR +++   K    L  + P+ HL +QSG D  LK MNRR+ A EYR+  +
Sbjct: 233 KRIRLGSLEPRIVTEEFAKELACLPKICPHFHLSLQSGCDATLKRMNRRYDAAEYREKCE 292

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
            +R    + A+++D IVGFP E++++F A+ D VD I + +   FKYS R GT  + M  
Sbjct: 293 LLRKYFENPALTTDVIVGFPQESEEEFEASRDFVDSINFYETHIFKYSKRQGTKAAKMDG 352

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG--KLVGRSPWLQSV 438
           Q+ E+ K  R   + +  R++   + +  +G+ +EVL E+  +  G   + G +     +
Sbjct: 353 QIPEHEKTRRSNIMLELNRKKMQRYEEGWLGKKVEVLFEEMTERDGKNYVTGHTKEYLRI 412

Query: 439 VLNSKNHN 446
            +  +   
Sbjct: 413 GVPCEPEQ 420


>gi|329942876|ref|ZP_08291655.1| RNA modification enzyme, MiaB family protein [Chlamydophila
           psittaci Cal10]
 gi|332287469|ref|YP_004422370.1| MiaB-like tRNA modification enzyme [Chlamydophila psittaci 6BC]
 gi|313848048|emb|CBY17046.1| conserved hypothetical protein [Chlamydophila psittaci RD1]
 gi|325506835|gb|ADZ18473.1| MiaB-like tRNA modification enzyme [Chlamydophila psittaci 6BC]
 gi|328815136|gb|EGF85125.1| RNA modification enzyme, MiaB family protein [Chlamydophila
           psittaci Cal10]
 gi|328914717|gb|AEB55550.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Chlamydophila
           psittaci 6BC]
          Length = 460

 Score =  352 bits (903), Expect = 8e-95,   Method: Composition-based stats.
 Identities = 117/453 (25%), Positives = 209/453 (46%), Gaps = 21/453 (4%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
             +    S GC  N+ DS  M  +    GYE    + +AD ++LNTC   + A ++   +
Sbjct: 15  KNKIHFISLGCSRNLVDSEVMLGILLKAGYEATELLQEADYLILNTCGFLKAARDESTDY 74

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           L RI + K    K      +++ GC+     EE+    P V+ V+G      +   +E  
Sbjct: 75  LQRIIDKKKETAK------IILTGCMVSKHKEELKPWLPYVHYVLGSGDVEHILSAIESK 128

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             G+++    Y    +  R       Y       A+L I EGC K C FC++P  +G   
Sbjct: 129 ESGEKLSSKSYLEMGEVPRKLSTPKHY-------AYLKIAEGCRKRCAFCIIPTIKGGLR 181

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           S+ L QV+ E R L+  GV E+ L+ Q++  +        K     +L  + +  G   +
Sbjct: 182 SKPLEQVIKEFRLLLKMGVKEVILIAQDLGDYGKDLSKDRKSCLHSVLREMLKEPGDYWI 241

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R    +P ++ D +I        L+PY+ +P+Q  ++RILK M R  +  +   ++ ++R
Sbjct: 242 RMLYLYPDEVDDTIIDLMEKDRRLLPYVDIPLQHINNRILKKMLRTTSREQILDLLTKLR 301

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           +  P + I S  IVGFPGETD++F+  +D V +        F YS   G+  + M  Q+ 
Sbjct: 302 TRIPHVYIRSSLIVGFPGETDEEFQELVDFVGEGWIDNLGIFSYSQEKGSLAAEMPYQIP 361

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-----GKLVGRSPWLQSV 438
           ++VK++RL  L +  ++     N   VG+ +E +I+ +  +       +  G++P +   
Sbjct: 362 QSVKSKRLKILSQTQKKNVEKHNKQFVGKTVEAVIDGYHPDSELLLTARFYGQAPEVDPC 421

Query: 439 VLNSKNHNI---GDIIKVRITDVKISTLYGELV 468
           ++ ++   +   G+   + IT      L G +V
Sbjct: 422 IIVNEARLVSGFGERYLIEITGYVGYDLVGRVV 454


>gi|293373984|ref|ZP_06620325.1| MiaB-like protein [Bacteroides ovatus SD CMC 3f]
 gi|292631060|gb|EFF49697.1| MiaB-like protein [Bacteroides ovatus SD CMC 3f]
          Length = 436

 Score =  352 bits (903), Expect = 8e-95,   Method: Composition-based stats.
 Identities = 107/454 (23%), Positives = 202/454 (44%), Gaps = 35/454 (7%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEKVYS 82
           +   + + GC  N+ DS ++       GY   +  +    ++ V+NTC     A E+  +
Sbjct: 4   KTIDIITLGCSKNLVDSEQLMRQLEEVGYSVTHDTENPQGEIAVINTCGFIGDAKEESIN 63

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +      K      G    + V GC+++   +E+    P V+   G   +  L + L +
Sbjct: 64  MILEFAERKEE----GDLKKLFVMGCLSERYLKELAVEIPQVDKFYGKFNWKELLQDLGK 119

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
                      Y  E   ER       Y       A+L I EGCD+ C++C +P   G  
Sbjct: 120 V----------YHDELYIERTLTTPQHY-------AYLKISEGCDRKCSYCAIPIITGHH 162

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           IS+ + +++DE R L+  GV E  ++ Q +  + G     +K    +L+  +S+I G+  
Sbjct: 163 ISKPMEEILDEVRYLVSQGVKEFQVIAQELT-YYGIDRY-KKQMLPELIERISDIPGVEW 220

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R   ++P      L +   + D +  Y+ + +Q  SD +LK M R+ +  +  Q+I++ 
Sbjct: 221 IRLHYAYPAHFPTDLFRVMRERDNVCKYMDIALQHISDNMLKLMRRQVSKEDTYQLIEQF 280

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN-MLEQ 381
           R   P I + +  +VG PGET++DF    + V K+ + +  +F YS   GT  +    + 
Sbjct: 281 RREVPGIHLRTTLMVGHPGETEEDFEDLKEFVRKVRFDRMGAFAYSEEEGTYAAETYEDS 340

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQS 437
           + + VK  RL  L    +      +   +G+ ++V+I++   E    +GR+    P +  
Sbjct: 341 IPQEVKQARLDELMDIQQGISAELSAEKIGKQMKVIIDRL--EGDYYIGRTEFDSPEVDP 398

Query: 438 VVLNS---KNHNIGDIIKVRITDVKISTLYGELV 468
            VL     +   IG + +V + +     LY +++
Sbjct: 399 EVLIDRSERELKIGQLYQVEVVNADDFDLYAKII 432


>gi|312886291|ref|ZP_07745904.1| MiaB-like tRNA modifying enzyme [Mucilaginibacter paludis DSM
           18603]
 gi|311301236|gb|EFQ78292.1| MiaB-like tRNA modifying enzyme [Mucilaginibacter paludis DSM
           18603]
          Length = 440

 Score =  352 bits (903), Expect = 8e-95,   Method: Composition-based stats.
 Identities = 118/438 (26%), Positives = 218/438 (49%), Gaps = 13/438 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + ++    + GC++N  ++  +  +F   G++ V+  D  D+ V+NTC + + A +K   
Sbjct: 1   MNKKVAFYTLGCKLNYSETSTIGRLFNKAGFDTVDFADTPDVFVINTCSVTDNADKKCKK 60

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +          +K   +  V + GC AQ + +EI    P V++V+G    + + E +  
Sbjct: 61  IVKEA-------LKISPNAYVTIVGCYAQLKPQEIA-EIPGVDMVLGAAEKFNIVEHIAD 112

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
                + +  +  V +  + ++    G NR R    FL +Q+GCD  CTFC +P  RG  
Sbjct: 113 LTKKPKTLVYNQPVSEANQFIASYSFGDNRTR---TFLKVQDGCDYSCTFCTIPLARGAS 169

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            S ++  V+++AR +  +GV EI L G N+    G      +  F DL+ +L E+ G+ R
Sbjct: 170 RSDTVESVLEQARAIAASGVKEIVLTGVNIG-DYGIRDGKREHKFFDLVKALDEVDGIDR 228

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R ++  P  ++D +I+         P+ H+P+QSGS++IL  M RR+    Y   + +I
Sbjct: 229 IRISSIEPNLLTDEIIEFVAVSKRFAPHFHIPLQSGSNKILSLMRRRYKRELYADRVAKI 288

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           + + PD  I  D IVGFPGET +DF  T + ++++  +    F YS R  T  + M   V
Sbjct: 289 KQLMPDCCIGVDVIVGFPGETREDFVETYNFLNELNISYLHVFTYSERENTLAAEMTGTV 348

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
             + ++ER   L     +++ +F ++ +G+ +E+L E+   + G + G S     V    
Sbjct: 349 PGSTRSERSKMLHILSDKKRRAFYESQLGKHVEILFERDITD-GYMHGFSRNYVKVKAKY 407

Query: 443 KNHNIGDIIKVRITDVKI 460
               + ++  V++T +  
Sbjct: 408 DPILVNELKTVQLTAISS 425


>gi|240145918|ref|ZP_04744519.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Roseburia intestinalis
           L1-82]
 gi|257201983|gb|EEV00268.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Roseburia intestinalis
           L1-82]
          Length = 435

 Score =  352 bits (903), Expect = 9e-95,   Method: Composition-based stats.
 Identities = 124/439 (28%), Positives = 215/439 (48%), Gaps = 23/439 (5%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++  + + GC++N Y++  M+ +  + GYE V   + AD+ V+NTC +   A  K     
Sbjct: 2   KKAALHNLGCKVNAYETEAMQQILENAGYEIVPFTEIADVYVINTCSVTNMADRKSRQMF 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R +       K   D +VV AGC  Q   E        +++V+G    + L  LL    
Sbjct: 62  HRAK-------KMNPDAIVVGAGCYVQT-KEAQALVDESIDIVIGNNQKHELVTLLNEYE 113

Query: 145 FGK----RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
                  ++VD ++  ++  E                AF+ +Q+GC++FC++C++P+ RG
Sbjct: 114 KEHTKQAQIVDINHEKQEYEELHL-----KKTAEHTRAFIKVQDGCNQFCSYCIIPFARG 168

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
              SR +  V++E + L  +G  E+ L G +++++   G+D  +   S L+  + EI+G+
Sbjct: 169 RVRSRKMEDVLNEIKGLAKSGYKEVVLTGIHLSSY---GVDTGETLLS-LIEHVHEIEGI 224

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R  +  PR +++   K   +L  + P+ HL +QSG D +LK MNRR+   EY    D
Sbjct: 225 ERIRLGSLEPRIVTEDFAKRLSELTKICPHFHLSLQSGCDSVLKRMNRRYDTAEYEAGCD 284

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
            +R      AI++D IVGFPGET+++F+ T + + KI + +   FKYS R GT  + M +
Sbjct: 285 LLRKYFTHPAITTDVIVGFPGETEEEFKITEEYLKKIHFYEMHIFKYSMREGTKAAVMPD 344

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG--KLVGRSPWLQSV 438
           QV E  K ER   L    ++    F +  VG+    L+E+     G     G +     V
Sbjct: 345 QVPEQKKTERSNILLSLEKKMSEEFRNYYVGKEKTALLEEELVVDGKTYFTGYTKEYVKV 404

Query: 439 VLNSKNHNIGDIIKVRITD 457
              ++ +     +  +I  
Sbjct: 405 AFETEKNMANQFVTGKIKG 423


>gi|301167860|emb|CBW27445.1| putative radical SAM protein [Bacteriovorax marinus SJ]
          Length = 492

 Score =  352 bits (903), Expect = 9e-95,   Method: Composition-based stats.
 Identities = 151/451 (33%), Positives = 254/451 (56%), Gaps = 17/451 (3%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P++ ++K+YGCQMN +D+ R+     S  + +   ++DADL++ NTC +R+ A  K YS 
Sbjct: 42  PRKVWMKTYGCQMNYHDTDRIMSHLKSLNFTQTEEVEDADLVLFNTCAVRDLANNKFYSH 101

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LG   NLK+ +  +  +L+V V GCVAQ EG+E++++   ++   GP T   + +++ R 
Sbjct: 102 LG---NLKHQKAIKKDNLVVGVGGCVAQTEGKELIKKYRHLDFAFGPDTIDSINDMVYRT 158

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             G    D+ + +       +             AF+ I +GC+K+CT+C+VPYTRG E 
Sbjct: 159 YAG----DSKFFINSWDRSENFSIETKISHGTPQAFVNIIKGCNKYCTYCIVPYTRGKER 214

Query: 204 SRSLSQVVDEARKLID-NGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           SR +++VV++ R+L+   G+ E+TLLGQNVN+  GK       + + L+  L  ++GL  
Sbjct: 215 SRKVAEVVEDIRRLVKYQGIQEVTLLGQNVNS-YGKE---NGESLAQLILELENLEGLEI 270

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +RYTTSHP D+SD LI  HG    L  +LHLP+QSGS+ +LK MNR +T   Y   ++++
Sbjct: 271 IRYTTSHPYDISDELIMTHGVSKKLSKHLHLPIQSGSNTVLKRMNREYTVEHYLDRVNKL 330

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R V+P+I IS+D I GF  ET+++  AT+ L+D   +   +S+ YS R  T  + M + +
Sbjct: 331 REVQPEIIISTDIIAGFVNETNEEHEATLKLLDDARFDFIYSYAYSKRNKTRAARMEDHL 390

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK--LVGRSPWLQSVVL 440
            ++++  RL  +Q    + Q        G+   +L+E     KG+    GR+   + V  
Sbjct: 391 TDDIRGARLREIQAHQLKLQAEIRKEMEGKSFRILVEGKNTFKGETKWKGRTNCNRIVHF 450

Query: 441 NSKNHNIG---DIIKVRITDVKISTLYGELV 468
             ++       + + V++ +    +  GEL+
Sbjct: 451 LPRDPEENLQWNWVDVKVIETTALSCQGELL 481


>gi|296445462|ref|ZP_06887419.1| MiaB-like tRNA modifying enzyme YliG [Methylosinus trichosporium
           OB3b]
 gi|296257028|gb|EFH04098.1| MiaB-like tRNA modifying enzyme YliG [Methylosinus trichosporium
           OB3b]
          Length = 452

 Score =  352 bits (903), Expect = 9e-95,   Method: Composition-based stats.
 Identities = 136/461 (29%), Positives = 215/461 (46%), Gaps = 42/461 (9%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R    S GC   + DS R+     ++GYE   +   AD++V+NTC   + A  +    +G
Sbjct: 16  RVSFVSLGCPKALVDSERILTRLRAEGYELSRTHAGADVVVVNTCGFLDSAKAESLEAIG 75

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
               LK +         VVV GC+  AE + I  R P V  + GPQ Y  + E +  A  
Sbjct: 76  AA--LKENGK-------VVVTGCMG-AEPQAITDRFPQVTAITGPQAYESVVEAVHAAAP 125

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            +R         D F  L + + G        A+L I EGCD  C+FC++P+ RG   SR
Sbjct: 126 PRR---------DPFLDL-VPEQGVKLTPRHYAYLKISEGCDNSCSFCIIPHLRGPLASR 175

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE---------KCTFSDLLYSLSE 256
             ++V+ EA KL+  GV E+ ++ Q+ +A  G+ L            +  F DL   L  
Sbjct: 176 PAAEVLREAEKLVKAGVKELLVISQDTSA-YGRDLRYAESAFGDRAVRARFLDLSRELGS 234

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           +   VRL Y   +P       + A G    ++PYL +P Q  +  +LK+M R     +  
Sbjct: 235 LGAWVRLHYVYPYPHVDEVVALMAEG---KVLPYLDIPFQHAAPSVLKTMKRPANEEKTL 291

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
           + I   R + PD+ + S FIVGFPGET+ DF   +D +D+    +A +F+Y P  G P +
Sbjct: 292 ERIKAWRRICPDLTLRSTFIVGFPGETEADFCYLLDWLDEAEIDRAGAFRYEPVAGAPAN 351

Query: 377 NML-EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK------EKGKLV 429
           ++  E V + VK  R     ++ ++         +G+ ++VLI++ G        KG+  
Sbjct: 352 DLPLEAVPDEVKETRWKRFMERQQKVSARLLKRKIGKRLQVLIDEPGGGASGALAKGRSK 411

Query: 430 GRSPWLQS-VVLNS-KNHNIGDIIKVRITDVKISTLYGELV 468
             +P +   V + S +    GDI+ V+I       L+G  V
Sbjct: 412 ADAPQIDGAVNVASRRPLRAGDIVTVKIERADAYDLHGVAV 452


>gi|217077525|ref|YP_002335243.1| hypothetical protein THA_1459 [Thermosipho africanus TCF52B]
 gi|238066615|sp|B7ID25|RIMO_THEAB RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|217037380|gb|ACJ75902.1| conserved hypothetical protein [Thermosipho africanus TCF52B]
          Length = 427

 Score =  352 bits (903), Expect = 9e-95,   Method: Composition-based stats.
 Identities = 130/446 (29%), Positives = 215/446 (48%), Gaps = 27/446 (6%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           F+V   GC  N  D   ++     +G   VN+++DAD +V++TC    +A ++    +  
Sbjct: 3   FYVDVLGCPKNEADCALLKAYLEKKGNNIVNTIEDADAVVIDTCGFILEAKKESIEEILT 62

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
              LK        DL V V GC+ Q  GEE+ +  P V+   G     ++ E +     G
Sbjct: 63  YLELKKE-----RDLKVYVTGCLVQRYGEELKKEIPEVDGWFGILPPEKIAENI-----G 112

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           K  +    + E  +E    VD          A++ I +GCD+ C+FC +P  +G   SR 
Sbjct: 113 KESI-IPKNPEPVYEFGGRVD------EKQYAYVKISDGCDRACSFCTIPLFKGSFKSRK 165

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
           +  +V E   LI +G  EI L+ Q+     G  L G K    +LL  +++I G   +R  
Sbjct: 166 IDDIVKEVEYLILSGKKEIILVAQDTTG-YGIDLYG-KQMLPELLKRINDIPGDFWIRVM 223

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
             HP  ++D +I+A    D ++ Y  +PVQ GSD++LK MNR   +    +++++IR   
Sbjct: 224 YMHPDHITDEIIEAF-SYDKVLKYFDIPVQHGSDKVLKLMNRTKKSEHILKLVEKIRKRY 282

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
            D  + +  IVGFPGETD+DF   +D +  + + +  +F YS     P  +   +V E V
Sbjct: 283 EDAVLRTSIIVGFPGETDEDFEELLDFIKMVRFERLGAFIYSDEEEAPSYHFEGKVPEIV 342

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVLNS 442
             ERL  L ++  +     N+  VG+  +VL ++  +E+G L+ RS    P +   +   
Sbjct: 343 AQERLDILMEEQSKISFEINEKMVGKTFKVLFDE--EEEGVLIARSYMDAPEIDGNIFVP 400

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
                G   KV++T   +  L G++V
Sbjct: 401 GKFEEG-FFKVKVTSADVYDLEGKIV 425


>gi|7020375|dbj|BAA91102.1| unnamed protein product [Homo sapiens]
          Length = 579

 Score =  351 bits (902), Expect = 9e-95,   Method: Composition-based stats.
 Identities = 116/460 (25%), Positives = 211/460 (45%), Gaps = 18/460 (3%)

Query: 11  AHMVSQIVDQCIVP-QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNT 69
               S   D  I   Q+ +++++GC  N  D   M     + GY+   +  DADL +LN+
Sbjct: 49  EEENSPPSDSTIPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNS 108

Query: 70  CHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG 129
           C ++  A +   + + + +              +V+AGCV QA+  +   +      ++G
Sbjct: 109 CTVKNPAEDHFRNSIKKAQEENKK---------IVLAGCVPQAQPRQDYLKG---LSIIG 156

Query: 130 PQTYYRLPELLERARFGKRVVDTDYSVED-KFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
            Q   R+ E++E    G  V       ++ +    + +D    RK  +   ++I  GC  
Sbjct: 157 VQQIDRVVEVVEETIKGHSVRLLGQKKDNGRRLGGARLDLPKIRKNPLIEIISISTGCLN 216

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS 248
            CT+C   + RG   S  + ++VD A++    GVCEI L  ++  A  G+ +     T  
Sbjct: 217 ACTYCKTKHARGNLASYPIDELVDRAKQSFQEGVCEIWLTSEDTGA-YGRDIGTNLPTLL 275

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
             L  +     ++RL  T           +    +   +  +LH+PVQS SD +L  M R
Sbjct: 276 WKLVEVIPEGAMLRLGMTNPPYILEHLEEMAKILNHPRVYAFLHIPVQSASDSVLMEMKR 335

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
            +   ++++++D ++   P I I++D I GFPGETD DF+ T+ LV++  +   F  ++ 
Sbjct: 336 EYCVADFKRVVDFLKEKVPGITIATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFY 395

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL 428
           PR GTP + M EQV   VK +R   L +       S  D  +G+  +VL+ +   +    
Sbjct: 396 PRPGTPAAKM-EQVPAQVKKQRTKDLSRVF--HSYSPYDHKIGERQQVLVTEESFDSKFY 452

Query: 429 VGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           V  + + + V++      +G +++V I +     + G+ V
Sbjct: 453 VAHNQFYEQVLVPKNPAFMGKMVEVDIYESGKHFMKGQPV 492


>gi|264677765|ref|YP_003277671.1| MiaB-like tRNA modifying enzyme YliG [Comamonas testosteroni CNB-2]
 gi|262208277|gb|ACY32375.1| MiaB-like tRNA modifying enzyme YliG [Comamonas testosteroni CNB-2]
          Length = 468

 Score =  351 bits (902), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 131/484 (27%), Positives = 210/484 (43%), Gaps = 51/484 (10%)

Query: 15  SQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIRE 74
           S    Q   P+  FV S GC   + DS  +     ++GY+   + + ADL+++NTC   +
Sbjct: 6   SVSPTQTATPKVGFV-SLGCPKALTDSELILTQLSAEGYQTSKTFEGADLVIVNTCGFID 64

Query: 75  KAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEE-----ILRRSPIVNVVVG 129
            A ++    +G                 V+V GC+    G+E     +    P V  V G
Sbjct: 65  DAVKESLDTIGEALAANGK---------VIVTGCLGAKAGKEGGSTMVAEVHPSVLAVTG 115

Query: 130 PQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKF 189
           P     + + +            D          S  D G        A+L I EGC+  
Sbjct: 116 PHATQEVMDAVHTHLPKPHDPFVDLVP------GSFGDAGIKLTPKHYAYLKISEGCNHR 169

Query: 190 CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE 243
           CTFC++P  RG  +SR +  V+ EA+ L + GV E+ ++ Q+ +A+      R    DG+
Sbjct: 170 CTFCIIPSMRGDLVSRPIGDVLKEAKALFEGGVKELLVISQDTSAYGVDVKYRTGFWDGK 229

Query: 244 --KCTFSDLLYSLSEI----KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQS 297
             K    +L   L ++       VRL Y   +P   +   + A G    ++PYL +P+Q 
Sbjct: 230 PVKTRMLELADELGKLAQQHGAWVRLHYVYPYPTVDAVLPLMAEG---KILPYLDVPLQH 286

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
               +LK M R  +  +    I   R + P++ I S FI GFPGET+++F   +D + + 
Sbjct: 287 SHPDVLKRMKRPASGEKNLDRIREWRKICPELVIRSTFIAGFPGETEEEFEHLLDFIREA 346

Query: 358 GYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVL 417
              +A  F YSP  G   + +   + E V+  R     +   E         VGQ+++VL
Sbjct: 347 EIDRAGCFAYSPVEGATANELPGMLPEEVREARRARFMEVAEEVSTKRLQRRVGQVMKVL 406

Query: 418 IEKH---GKEKGKLVGRS----PWLQSVVLN------SKNHNIGDIIKVRITDVKISTLY 464
           ++K    GK+ G  VGR+    P +  VV        SK + +G++I VRI   +   L 
Sbjct: 407 VDKAVSLGKKGG--VGRTYADAPEIDGVVHIQPPEKASKTYKVGELISVRIVGTQGHDLV 464

Query: 465 GELV 468
           G  V
Sbjct: 465 GVPV 468


>gi|299531587|ref|ZP_07044992.1| MiaB-like tRNA modifying enzyme YliG [Comamonas testosteroni S44]
 gi|298720303|gb|EFI61255.1| MiaB-like tRNA modifying enzyme YliG [Comamonas testosteroni S44]
          Length = 468

 Score =  351 bits (902), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 130/484 (26%), Positives = 211/484 (43%), Gaps = 51/484 (10%)

Query: 15  SQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIRE 74
           S    Q  +P+  FV S GC   + DS  +     ++GY+   + + ADL+++NTC   +
Sbjct: 6   SVSPTQTAIPKVGFV-SLGCPKALTDSELILTQLSAEGYQTSKTFEGADLVIVNTCGFID 64

Query: 75  KAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEE-----ILRRSPIVNVVVG 129
            A ++    +G                 V+V GC+    G+E     +    P V  V G
Sbjct: 65  DAVKESLDTIGEALAANGK---------VIVTGCLGAKAGKEGGSTMVAEVHPSVLAVTG 115

Query: 130 PQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKF 189
           P     + + +            D          S  D G        A+L I EGC+  
Sbjct: 116 PHATQEVMDAVHTHLPKPHDPFVDLVP------GSFGDAGIKLTPKHYAYLKISEGCNHR 169

Query: 190 CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE 243
           CTFC++P  RG  +SR +  V+ EA+ L + GV E+ ++ Q+ +A+      R    DG+
Sbjct: 170 CTFCIIPSMRGDLVSRPIGDVLKEAKALFEGGVKELLVISQDTSAYGVDVKYRTGFWDGK 229

Query: 244 --KCTFSDLLYSLSEI----KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQS 297
             K    +L   L ++       VRL Y   +P   +   + A G    ++PYL +P+Q 
Sbjct: 230 PVKTRMLELADELGKLAQQHGAWVRLHYVYPYPTVDAVLPLMAEG---KILPYLDVPLQH 286

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
               +LK M R  +  +    I   R + P++ I S FI GFPGET+++F   +D + + 
Sbjct: 287 SHPDVLKRMKRPASGEKNLDRIREWRKICPELVIRSTFIAGFPGETEEEFEHLLDFIREA 346

Query: 358 GYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVL 417
              +A  F YSP  G   + +   + E V+  R     +   E         VGQ+++VL
Sbjct: 347 EIDRAGCFAYSPVEGATANELPGMLPEEVREARRARFMEVAEEVSTKRLQRRVGQVMKVL 406

Query: 418 IEKH---GKEKGKLVGRS----PWLQSVVLN------SKNHNIGDIIKVRITDVKISTLY 464
           ++K    GK+ G  +GR+    P +  VV        SK + +G++I VRI   +   L 
Sbjct: 407 VDKAVSLGKKGG--MGRTYADAPEIDGVVHIQPPEKASKTYKVGELISVRIVGTQGHDLV 464

Query: 465 GELV 468
           G  V
Sbjct: 465 GVPV 468


>gi|323483779|ref|ZP_08089159.1| hypothetical protein HMPREF9474_00908 [Clostridium symbiosum
           WAL-14163]
 gi|323402970|gb|EGA95288.1| hypothetical protein HMPREF9474_00908 [Clostridium symbiosum
           WAL-14163]
          Length = 436

 Score =  351 bits (902), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 127/437 (29%), Positives = 219/437 (50%), Gaps = 16/437 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++  + + GC++N Y++  M+ +    GYE V   D AD+ ++NTC +   A +K    L
Sbjct: 2   RKAALHNLGCKVNAYETEAMQQLLEDAGYEIVPFKDGADVYIINTCSVTNVADKKSRQML 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER-- 142
            R +       K   D +VV  GC  QA  E++ +    V++++G      L  LLER  
Sbjct: 62  HRAK-------KMNPDSVVVAVGCYVQAAKEDLEKDM-AVDLIIGNNKKKDLVGLLERYF 113

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           A    R    D +   ++E L I            AF+ +Q+GC++FC++C++PYTRG  
Sbjct: 114 ADRDDREEVIDIAATGEYEELHI----RKIADHTRAFIKVQDGCNQFCSYCIIPYTRGRV 169

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR++  VV E   L   G  EI L G +++++     + ++     L+  L +I+G+ R
Sbjct: 170 RSRAIGDVVKEVEGLAAAGYKEIVLTGIHLSSYGVDFPEEKRENLLSLITCLDKIQGIER 229

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R  +  PR +++  + A   L  + P+ HL +QSG +  L  MNR +TA EY +    +
Sbjct: 230 IRLGSLEPRIITEEFVSALAGLKSICPHFHLSLQSGCNATLARMNRHYTAQEYLERCVIL 289

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R    + AI++D IVGFPGET ++F  T   ++ + + +   FKYS R GT  + M  QV
Sbjct: 290 RKHFDNPAITTDVIVGFPGETVEEFDETKRFLETVRFYEMHIFKYSKREGTRAAVMENQV 349

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK--LVGRSPWLQSVVL 440
            E  K+ R   L     +    + ++ +G+  EVL+E+     G+  ++G +       +
Sbjct: 350 PEQDKSVRSDILLTLEHKMSDEYRESFLGKETEVLLEEKVVIGGQAYMMGHTRQYVKAAI 409

Query: 441 NSKNHNIGDIIKVRITD 457
             +       +K R+T+
Sbjct: 410 PFEEGLKNTTVKGRLTE 426


>gi|145641843|ref|ZP_01797418.1| hypothetical protein CGSHiR3021_01197 [Haemophilus influenzae
           R3021]
 gi|145273465|gb|EDK13336.1| hypothetical protein CGSHiR3021_01197 [Haemophilus influenzae
           22.4-21]
          Length = 328

 Score =  351 bits (902), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 170/334 (50%), Positives = 233/334 (69%), Gaps = 11/334 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + Q+  +K++GCQMN YDS +M D+  S  G E   + ++AD+++LNTC IREKA EKV+
Sbjct: 1   MTQKLHIKTWGCQMNEYDSSKMADLLLSTHGLELTEAPEEADVLLLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR + LK    K   +L++ V GCVA  EGE I  R+P V+++ GPQT +RLPE++ 
Sbjct: 61  HQLGRWKELK----KNNPNLVIGVGGCVASQEGEHIRHRAPYVDIIFGPQTLHRLPEMIN 116

Query: 142 RARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           + R GK  VVD  +   +KF+RL        R  G TAF++I EGC+K+CTFCVVPYTRG
Sbjct: 117 QIRGGKSSVVDVSFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTFCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR +  V+ E  +L + GV E+ LLGQNVNA+RG   DG+ C+F++LL  ++ I G+
Sbjct: 172 EEVSRPVDDVLFEIAQLAEQGVREVNLLGQNVNAYRGPTHDGQICSFAELLRLVASIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            RLR+TTSHP + +D +I  + D   L+ +LHLPVQ+GSDR+L  M R HTA EY+ II 
Sbjct: 232 DRLRFTTSHPIEFTDDIIDVYRDTPELVSFLHLPVQAGSDRVLTMMKRAHTALEYKSIIR 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           ++R+VRPDI ISSDFIVGFPGET +DF  TM+L+
Sbjct: 292 KLRAVRPDIQISSDFIVGFPGETAEDFEQTMNLI 325


>gi|313206267|ref|YP_004045444.1| miab-like tRNA modifying enzyme [Riemerella anatipestifer DSM
           15868]
 gi|312445583|gb|ADQ81938.1| MiaB-like tRNA modifying enzyme [Riemerella anatipestifer DSM
           15868]
 gi|315023051|gb|EFT36064.1| MiaB family protein, possibly involved in tRNA or rRNA modification
           [Riemerella anatipestifer RA-YM]
 gi|325336291|gb|ADZ12565.1| 2-methylthioadenine synthetase [Riemerella anatipestifer RA-GD]
          Length = 448

 Score =  351 bits (902), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 126/429 (29%), Positives = 212/429 (49%), Gaps = 16/429 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +     + GC++N  ++  +       GY++VN  D AD+ V+NTC + E A  +    +
Sbjct: 6   KTAAYHTLGCKLNFAETSTIARQLSDAGYQKVNFDDRADVYVINTCSVTENADRECKIHV 65

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R        +K   + LVVV GC AQ + EEI  +   V++V+G +  + +   LE   
Sbjct: 66  KRA-------MKANPEGLVVVVGCYAQLKPEEI-SKIEGVDLVLGAKEKFNILSYLEDL- 116

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
             ++  +       + E      G Y+      AFL +Q+GCD  CT+C +P  RGI  S
Sbjct: 117 --EKAHNEGIVHSCEIEEADFFIGSYSIGDRTRAFLKVQDGCDYKCTYCTIPLARGISRS 174

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK---CTFSDLLYSLSEIKGLV 261
            ++  V+  A+++    + EI L G N+    GKG  G K    TF DL+  L +++G+ 
Sbjct: 175 DTIENVIKNAQEIATKDIKEIVLTGVNIG-DYGKGEFGNKKHEHTFLDLITELDKVEGIE 233

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R ++  P  + +  I+        +P+ H+P+QSGSD +LK M RR+    YR  ID 
Sbjct: 234 RIRISSIEPNLLKNESIELVAQSKRFVPHFHIPLQSGSDELLKRMKRRYLTKLYRDRIDT 293

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I+SV P+ AI  D IVGFPGET++ F  T   ++++  +    F YS R  T    M   
Sbjct: 294 IKSVMPNAAIGVDVIVGFPGETEERFLETYHFLNELPISYLHIFTYSERENTEAVAMNGV 353

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           V  + + +R   L+    +++++F  + +G+ + +L E   K+ G + G +     V   
Sbjct: 354 VPISERKKRNKMLRILSEKKKMAFYQSQLGKTLPILWEHENKD-GMMFGFTENYVRVKKP 412

Query: 442 SKNHNIGDI 450
               ++  I
Sbjct: 413 FDQSSVNQI 421


>gi|21617853|ref|NP_653119.1| CDK5 regulatory subunit-associated protein 1-like 1 [Mus musculus]
 gi|81879575|sp|Q91WE6|CDKAL_MOUSE RecName: Full=CDK5 regulatory subunit-associated protein 1-like 1
 gi|16359212|gb|AAH16073.1| CDK5 regulatory subunit associated protein 1-like 1 [Mus musculus]
 gi|56205715|emb|CAI24677.1| CDK5 regulatory subunit associated protein 1-like 1 [Mus musculus]
 gi|56238093|emb|CAI25816.1| CDK5 regulatory subunit associated protein 1-like 1 [Mus musculus]
 gi|56800055|emb|CAI35240.1| CDK5 regulatory subunit associated protein 1-like 1 [Mus musculus]
 gi|56800204|emb|CAI35144.1| CDK5 regulatory subunit associated protein 1-like 1 [Mus musculus]
 gi|148700456|gb|EDL32403.1| CDK5 regulatory subunit associated protein 1-like 1, isoform CRA_c
           [Mus musculus]
          Length = 578

 Score =  351 bits (902), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 114/456 (25%), Positives = 212/456 (46%), Gaps = 19/456 (4%)

Query: 16  QIVDQCIVP--QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIR 73
           +      +P  Q+ +++++GC  N  D   M     + GY+   +  DADL +LN+C ++
Sbjct: 52  RPPSDSTIPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVK 111

Query: 74  EKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTY 133
             A +   + + + +              VV+AGCV QA+  +   +      ++G Q  
Sbjct: 112 NPAEDHFRNSIKKAQEENKK---------VVLAGCVPQAQPRQDYLKG---LSIIGVQQI 159

Query: 134 YRLPELLERARFGKRVVDTDYSVED-KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTF 192
            R+ E++E    G  V       ++ K    + +D    RK  +   ++I  GC   CT+
Sbjct: 160 DRVVEVVEETIKGHSVRLLGQKKDNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTY 219

Query: 193 CVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLY 252
           C   + RG   S  + ++V+ A++    GVCEI L  ++  A  G+ +  +  T    L 
Sbjct: 220 CKTKHARGNLASYPIDELVERAKQSFQEGVCEIWLTSEDTGA-YGRDIGTDLPTLLWKLV 278

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
            +     ++RL  T           +    +   +  +LH+PVQS SD +L  M R +  
Sbjct: 279 EVIPEGAMLRLGMTNPPYILEHLEEMAKILNHPRVYAFLHIPVQSASDSVLMDMKREYCV 338

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
            ++++++D ++   P I I++D I GFPGETD DF+ T+ LV++  +   F  ++ PR G
Sbjct: 339 ADFKRVVDFLKEKVPGITIATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPG 398

Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS 432
           TP +   EQV  +VK +R   L +       +  D  +G+  +VL+ +   +    V  +
Sbjct: 399 TPAAK-AEQVPAHVKKQRTKDLSRVF--HSYNPYDHKIGERQQVLVTEESFDSKFYVAHN 455

Query: 433 PWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            + + V++      +G +++V I +     L G+ V
Sbjct: 456 RFYEQVLVPKNPAFMGKMVEVDIYESGKHFLKGQPV 491


>gi|289209542|ref|YP_003461608.1| MiaB-like tRNA modifying enzyme YliG [Thioalkalivibrio sp. K90mix]
 gi|288945173|gb|ADC72872.1| MiaB-like tRNA modifying enzyme YliG [Thioalkalivibrio sp. K90mix]
          Length = 453

 Score =  351 bits (902), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 129/459 (28%), Positives = 204/459 (44%), Gaps = 37/459 (8%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           QR    S GC   + DS ++     ++GYE     D ADL+V+NTC   + A  +    +
Sbjct: 13  QRVGFVSLGCPKALVDSEQILTRLRAEGYEIAADYDGADLVVVNTCGFIDDAVAESLDAI 72

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           G   +          +  V+V GC+   + E I    P V  V GP  +  +   +    
Sbjct: 73  GEAMDA---------NGRVIVTGCLG-KDAERIHETHPGVLAVTGPHAFDEVVGAVHEHL 122

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
                          FE L    G     R   A+L I EGC+  C+FC++P  RG  +S
Sbjct: 123 P---------PPATPFESLVPPQGIRLTPRHY-AYLKISEGCNHRCSFCIIPSLRGDLVS 172

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAW-----RGKGLDGEKCTFSD---LLYSLSE 256
           R + +V+ EA +L   GV EI ++ Q+ +A+        G  G +   SD   L  +L +
Sbjct: 173 RPIGEVLAEAERLAAAGVREILVISQDTSAYGVDVKYRTGFHGGRPIRSDIAHLAEALGQ 232

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           +   VRL Y   +P       +   G+   ++PYL +P+Q G  R+LK+M R   A    
Sbjct: 233 LGIWVRLHYVYPYPHVDRLIPLMGSGEDGGILPYLDMPLQHGHPRVLKAMRRPAAAERVL 292

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
           + I + R   PD+ + S FIVGFPGET+ +F   ++ + +    +  +F YSP  G   +
Sbjct: 293 ERIAKWREQVPDLTLRSTFIVGFPGETEAEFETLLEFLHEAQLDRVGAFAYSPVEGAAAN 352

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS---- 432
            + + V E V+ ERL                  +G    VL+++     G ++ RS    
Sbjct: 353 ELADPVPEAVREERLARFMDVQARISADRLRRRIGSQPVVLVDEV-HADGTVIARSAAEA 411

Query: 433 PWLQSVV----LNSKNHNIGDIIKVRITDVKISTLYGEL 467
           P +  V+    ++  + +IGD I+V ITD     L  EL
Sbjct: 412 PEIDGVIRVAGIDPTSVDIGDFIEVAITDTDEHDLIAEL 450


>gi|14042133|dbj|BAB55120.1| unnamed protein product [Homo sapiens]
          Length = 395

 Score =  351 bits (902), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 132/398 (33%), Positives = 223/398 (56%), Gaps = 26/398 (6%)

Query: 17  IVDQCI-VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREK 75
           ++D+ +   ++ ++++YGCQMNV D+     +    GY R +++ +AD+I+L TC IREK
Sbjct: 1   MMDELLGRQRKVYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCSIREK 60

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135
           A + +++ L +++ LK  R +    L + + GC+A+   EEIL R  +V+++ GP  Y  
Sbjct: 61  AEQTIWNRLHQLKALKTRRPRSRVPLRIGILGCMAERLKEEILNREKMVDILAGPDAYRD 120

Query: 136 LPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
           LP LL  A  G++  +   S+++ +  +  V          +AF++I  GCD  C++C+V
Sbjct: 121 LPRLLAVAESGQQAANVLLSLDETYADVMPVQTS---ASATSAFVSIMRGCDNMCSYCIV 177

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG---------------- 239
           P TRG E SR ++  ++E +KL + G+ E+TLLGQNVN++RG                  
Sbjct: 178 PLTRGRERSRPIASTLEEVKKLSEQGLKEVTLLGQNVNSFRGNSEVQFNSAVPTNLSRGF 237

Query: 240 -----LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP 294
                       F+ LL  +S +   +R+R+T+ HP+D  D +++   + D +   +HLP
Sbjct: 238 TTNYKTKQGGLRFAHLLDQVSRVDPEMRIRFTSPHPKDFPDEVLQLIHERDNICKQIHLP 297

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
            QSGS R+L++M R ++   Y +++  IR   P +++SSDFI GF GET++D   T+ L+
Sbjct: 298 AQSGSSRVLEAMRRGYSREAYVELVHHIRESIPGVSLSSDFIAGFCGETEEDHVQTVSLL 357

Query: 355 DKIGYAQAFSFKYSPRLGTPGS-NMLEQVDENVKAERL 391
            ++ Y   F F YS R  T     + + V E VK  RL
Sbjct: 358 REVQYNMGFLFAYSMRQKTRAYHRLKDDVPEEVKLRRL 395


>gi|332520869|ref|ZP_08397329.1| MiaB-like tRNA modifying enzyme [Lacinutrix algicola 5H-3-7-4]
 gi|332043399|gb|EGI79595.1| MiaB-like tRNA modifying enzyme [Lacinutrix algicola 5H-3-7-4]
          Length = 440

 Score =  351 bits (901), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 121/445 (27%), Positives = 210/445 (47%), Gaps = 17/445 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + ++    + GC++N  ++  +   F  +G+ RV   + AD+ V+NTC + E A +    
Sbjct: 1   MNKKVAFYTLGCKLNFSETSTIARSFKEEGFSRVEFNETADIYVINTCSVTENADK---- 56

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
              R + +     K   +  V   GC AQ + EE+   +  V++V+G    +++ + L  
Sbjct: 57  ---RFKTIVKQAQKANPEAFVAAVGCYAQLKPEELADVN-GVDLVLGATEKFKITDYLND 112

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
                   D                G Y+      AFL +Q+GCD  CT+C +P  RGI 
Sbjct: 113 LTKN----DFGEVHSCDINDADFYVGSYSIGDRTRAFLKVQDGCDYKCTYCTIPLARGIS 168

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK---CTFSDLLYSLSEIKG 259
            S  L  V++ A+++   G+ EI L G N+    GKG  G K    TF +L+ +L +++G
Sbjct: 169 RSDKLDNVLNNAKEISAKGIKEIVLTGVNIG-DYGKGEFGNKKHEHTFLELVEALDKVEG 227

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           + RLR ++  P  + +  I+        +P+ H+P+QSG + ILK M RR+    Y   +
Sbjct: 228 IERLRISSIEPNLLKNETIEVVSKSRAFVPHFHIPLQSGHNDILKLMKRRYMRELYVDRV 287

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            +I+ V P   I  D IVGFPGETD+ F  T + ++ +  +    F YS R  T  ++  
Sbjct: 288 AKIKEVMPHACIGVDVIVGFPGETDEHFLETYNFLNTLDISYLHVFTYSERDNTEAASFK 347

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV 439
             V +N++++R   L+    +++ ++ +  +G    VL E   KE G + G +     V 
Sbjct: 348 NVVPKNIRSKRSKMLRGLSAKKRRAYYEKQIGTSRSVLFEGENKE-GYIHGFTENYVKVK 406

Query: 440 LNSKNHNIGDIIKVRITDVKISTLY 464
                  +  I +V +T +    L 
Sbjct: 407 APWNPELVNTIHQVNLTKIDDDGLV 431


>gi|289449481|ref|YP_003474956.1| ribosomal protein S12 methylthiotransferase RimO [Clostridiales
           genomosp. BVAB3 str. UPII9-5]
 gi|289184028|gb|ADC90453.1| ribosomal protein S12 methylthiotransferase RimO [Clostridiales
           genomosp. BVAB3 str. UPII9-5]
          Length = 453

 Score =  351 bits (901), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 110/446 (24%), Positives = 195/446 (43%), Gaps = 17/446 (3%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
             + S GC  N+ DS  M D     G   V+    A++I++NTC   E A  +    +  
Sbjct: 8   VALVSLGCPKNLVDSEYMADRMAKAGLCLVDDPAKAEVIIVNTCGFIESAKVEAIDTILA 67

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           +   K  + K      ++V GC++Q    ++ +  P ++ ++G   Y  +   ++     
Sbjct: 68  MAEYKTDKCKY-----LIVTGCLSQRYHGDMKKDLPEIDAILGVGAYGEIVNAIDTLYER 122

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVT---AFLTIQEGCDKFCTFCVVPYTRGIEI 203
                 +     +  R    D   N +   T   A+L I EGC   C +C +P  RG  I
Sbjct: 123 DAATIAEAVPFCEVRRGHTTDHFVNFRTPSTGSFAYLKIAEGCSNTCAYCAIPGIRGHMI 182

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR +  +  EA  L+   V E+ ++ Q+  A  G  L  E+    +LL  +  +     +
Sbjct: 183 SRPMEDITAEADNLLQQNVKELIIVAQDTTA-YGVDLYKERK-LPELLQKICALPYDFHI 240

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R    +   M++ L+    D   +  Y+ +P+Q  SD +LK M R+ T     +I+   R
Sbjct: 241 RLLYCYSDGMTEELLTVLADEPKICHYIDMPIQHASDHVLKLMGRKDTKENIYRIMHTWR 300

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              PDI   +  +VGFPGET+ DF   + L+  + + +   F++SP  GT    M +QV 
Sbjct: 301 QRIPDIVFRTTVMVGFPGETEADFNELIQLIKDLRFERLGCFEFSPEEGTKAVRMPDQVP 360

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVV 439
             +  +R   L +   +   +FN++ +  I    IE   ++    +GR    SP +  ++
Sbjct: 361 AEIAKQRYETLMEVQNKISQAFNESRLHTITTARIEGITEDGIFYLGRSYAESPDIDPML 420

Query: 440 L---NSKNHNIGDIIKVRITDVKIST 462
                 +  N G+++KV I +V    
Sbjct: 421 YILAKQRELNPGEMVKVEIIEVDAYD 446


>gi|323692752|ref|ZP_08106980.1| hypothetical protein HMPREF9475_01843 [Clostridium symbiosum
           WAL-14673]
 gi|323503194|gb|EGB19028.1| hypothetical protein HMPREF9475_01843 [Clostridium symbiosum
           WAL-14673]
          Length = 436

 Score =  351 bits (901), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 127/437 (29%), Positives = 219/437 (50%), Gaps = 16/437 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++  + + GC++N Y++  M+ +    GYE V   D AD+ ++NTC +   A +K    L
Sbjct: 2   RKAALHNLGCKVNAYETEAMQQLLEDAGYEIVPFKDGADVYIINTCSVTNVADKKSRQML 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER-- 142
            R +       K   D +VV  GC  QA  E++ +    V++++G      L  LLER  
Sbjct: 62  HRAK-------KMNPDSVVVAVGCYVQAAKEDLEKDM-AVDLIIGNNKKKDLVGLLERYF 113

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           A    R    D +   ++E L I            AF+ +Q+GC++FC++C++PYTRG  
Sbjct: 114 ADRDDREEVIDIAATGEYEELHI----RKIADHTRAFIKVQDGCNQFCSYCIIPYTRGRV 169

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR++  VV E   L   G  EI L G +++++     + ++     L+  L +I+G+ R
Sbjct: 170 RSRAIGDVVKEVEGLAAAGYKEIVLTGIHLSSYGVDFSEEKRENLLSLITCLDKIQGIER 229

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R  +  PR +++  + A   L  + P+ HL +QSG +  L  MNR +TA EY +    +
Sbjct: 230 IRLGSLEPRIITEEFVSALAGLKSICPHFHLSLQSGCNATLARMNRHYTAQEYLERCVIL 289

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R    + AI++D IVGFPGET ++F  T   ++ + + +   FKYS R GT  + M  QV
Sbjct: 290 RKHFDNPAITTDVIVGFPGETVEEFDETKRFLETVRFYEMHIFKYSKREGTRAAVMENQV 349

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK--LVGRSPWLQSVVL 440
            E  K+ R   L     +    + ++ +G+  EVL+E+     G+  ++G +       +
Sbjct: 350 PEQDKSVRSDILLTLEHKMSDEYRESFLGKETEVLLEEKVVIGGQAYMMGHTRQYVKAAI 409

Query: 441 NSKNHNIGDIIKVRITD 457
             +       +K R+T+
Sbjct: 410 PFEEGLKNTTVKGRLTE 426


>gi|209964034|ref|YP_002296949.1| hypothetical protein RC1_0705 [Rhodospirillum centenum SW]
 gi|238066578|sp|B6IRQ0|RIMO_RHOCS RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|209957500|gb|ACI98136.1| conserved hypothetical protein [Rhodospirillum centenum SW]
          Length = 448

 Score =  351 bits (901), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 130/467 (27%), Positives = 210/467 (44%), Gaps = 38/467 (8%)

Query: 14  VSQIVDQCIVP-QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHI 72
            +    + + P  +  + S GC   + DS R+     S+GYE   S D AD++++NTC  
Sbjct: 4   TAAPAAKTLAPAPKVGIVSLGCPKALVDSERILTKLRSEGYEISGSYDGADVVLVNTCGF 63

Query: 73  REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT 132
            + A  +    +G         IKE G   V+V GC+   + E I    P V  V GP  
Sbjct: 64  LDSAKTESLDAIGEA-------IKENG--RVIVTGCLG-KDAELIRETHPQVLAVTGPHQ 113

Query: 133 YYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTF 192
           Y ++   +          D      D +  L +   G        A+L I EGC+  CTF
Sbjct: 114 YEQVVAAVH---------DVVPPRHDPYLDL-VPPQGLRLTPRHYAYLKISEGCNNRCTF 163

Query: 193 CVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE--------- 243
           C++P  RG  +SR  + V+ EA KL+  GV E+ ++ Q+ +A  G  L            
Sbjct: 164 CIIPSIRGDLVSRPANLVLAEAEKLVKAGVKELLVVSQDTSA-YGVDLKYAESRHRNRPV 222

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
           +  F DL   L ++   VRL Y   +P       + A G    ++PYL +P Q  S R+L
Sbjct: 223 RARFLDLCQELGQLGAWVRLHYVYPYPHVDEVIPLMAEG---KVLPYLDIPFQHASPRVL 279

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           K+M R        + I   R+  PD+ + S FIVGFPGET++DF+  +D + +    +  
Sbjct: 280 KAMRRPADHERILERIKGWRAGCPDLTLRSTFIVGFPGETEEDFQFLLDWLTEAQIDRLG 339

Query: 364 SFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK 423
            F+Y P  G   + +   V + VK ER   L +  +    +   A +G+ IEVLI++  +
Sbjct: 340 CFQYEPVTGAKANGIPGAVPDEVKEERWHRLMQHQQAISDARMQARIGRSIEVLIDEVDE 399

Query: 424 EK--GKLVGRSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGE 466
           +   G+    +P +   V  +   ++  GD++K  +        + E
Sbjct: 400 DGATGRSWADAPEIDGNVFLNGETDLKQGDLVKATVFATDAYDAWAE 446


>gi|154504516|ref|ZP_02041254.1| hypothetical protein RUMGNA_02020 [Ruminococcus gnavus ATCC 29149]
 gi|153794998|gb|EDN77418.1| hypothetical protein RUMGNA_02020 [Ruminococcus gnavus ATCC 29149]
          Length = 430

 Score =  351 bits (901), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 133/442 (30%), Positives = 236/442 (53%), Gaps = 22/442 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++  + + GC++N Y++  M++M    GYE V   + AD+ V+NTC +   A  K    L
Sbjct: 2   KKVALHNLGCKVNAYETEAMQEMLEHAGYEIVPFQEGADIYVINTCTVTNIADRKSRQML 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R R       K   D +VV AGC  QA+ E+     P +++V+G      L   L+   
Sbjct: 62  HRAR-------KMNPDAVVVAAGCYVQAQAEK-QVIDPCIDIVLGNNKKQDLLTALQAYE 113

Query: 145 FG----KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
                 + V+D +++ E  +E L +   G + +    A++ +Q+GC++FC++C++PY RG
Sbjct: 114 EAHGDLREVIDINHTKE--YENLHLTKQGEHTR----AYIKVQDGCNQFCSYCIIPYARG 167

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
              SR+   VV E   L  NG  E+ L G ++++  G   + E    S L+ ++ EI+G+
Sbjct: 168 RVRSRAKEDVVAEVTDLAKNGYQEVVLTGIHLSS-YGIDFENEDNLLS-LIRAVHEIEGI 225

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R  +  PR +++  ++A   L  + P+ HL +QSG +  LK MNRR+T+ E+ +  +
Sbjct: 226 KRIRLGSLEPRIITEEFVQAIAALPKMCPHFHLSLQSGCNETLKRMNRRYTSEEFYEKCE 285

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
            +R      A+++D IVGFP ET+++F  T + + KI + +   FKYS R GT  + M  
Sbjct: 286 ILRKYFEKPALTTDVIVGFPQETEEEFETTYEFLKKICFYETHIFKYSKREGTKAAVMQG 345

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK--LVGRSPWLQSV 438
           Q+ E +KA+R   L +   + + ++ ++ +G+ +EVL+E+     GK    G +     +
Sbjct: 346 QIPEQIKAKRSARLIELGEKNRRAYEESFLGKTVEVLVEEKSDVNGKEMWTGHTKEYMKI 405

Query: 439 VLNSKNHNIGDIIKVRITDVKI 460
            L S+ +    I+ V+I D + 
Sbjct: 406 ALESEKNLQNCILNVQIKDGRE 427


>gi|326572748|gb|EGE22734.1| MiaB family tRNA modifying enzyme [Moraxella catarrhalis BC7]
          Length = 458

 Score =  351 bits (901), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 128/461 (27%), Positives = 200/461 (43%), Gaps = 37/461 (8%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC   + DS R+      +GY+  N  D ADL+V+NTC   E A ++    +G
Sbjct: 11  KIGFVSLGCPKALVDSERIITELTYEGYQVANDYDGADLVVVNTCGFIESAVQESLDAIG 70

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                         +  V+V GC+   + E+I    P V  V G   Y  +   +     
Sbjct: 71  EA---------INKNGKVIVTGCLG-KDAEKIRTMHPAVLAVTGAHAYEEVISAV----- 115

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
              V     S E   +   I D G        A++ I EGC+  CTFC++P  RG  +SR
Sbjct: 116 NHHVPKPIKSKEYDPKIDLINDAGIKLTPKHYAYVKISEGCNHRCTFCIIPSLRGDLVSR 175

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE---------KCTFSDLLYSLSE 256
            +  V+ EA  L  +GV E+ ++ Q+ +A  G  L  +         K  F D+  ++S+
Sbjct: 176 PIDSVMKEAVALKKSGVKELLVISQDTSA-YGVDLKYKTVFWEGWPLKSRFYDMCEAMSK 234

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKA-----HGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
           +   VRL Y   +P   +   I A        +  L+PYL +P Q  S  +LK+M R   
Sbjct: 235 LGIWVRLHYVYPYPHVDAVVQIMADSMTASAGMGGLLPYLDIPFQHASPNVLKAMKRPAM 294

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
           +    + I   R++ PDI I S F+VGFPGETD+DF   +D + K    +   F YS   
Sbjct: 295 SENTLERIQAWRAICPDIVIRSTFVVGFPGETDEDFEYLLDWLTKARLDRVGCFTYSEIE 354

Query: 372 GTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR 431
           G   +++   V E+VK  R   L    ++         VG+ + VL+++   E+   + R
Sbjct: 355 GAVANDLPNPVPESVKQSRYERLMALQQKISAEKLAEKVGKTLVVLVDEIDTEENIAICR 414

Query: 432 S----PWLQSVVLNSK---NHNIGDIIKVRITDVKISTLYG 465
           S    P +   V           GD++ V I +     L+ 
Sbjct: 415 SYADAPEIDGHVYVDNIDATVKAGDMLTVVIDEASDYDLFA 455


>gi|260063507|ref|YP_003196587.1| putative oxidoreductase [Robiginitalea biformata HTCC2501]
 gi|88782951|gb|EAR14125.1| putative oxidoreductase [Robiginitalea biformata HTCC2501]
          Length = 434

 Score =  351 bits (901), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 122/460 (26%), Positives = 211/460 (45%), Gaps = 33/460 (7%)

Query: 17  IVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA 76
           +  +     R  V + GC  N+YDS  +     +   + V+  +  +++V+NTC     A
Sbjct: 1   MRTKSSKKNRINVVTLGCSKNLYDSEVLMGQLKASEKDVVHEGEG-NIVVINTCGFIANA 59

Query: 77  AEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL 136
            E+  + +      K     +G    V V GC+++    ++ +  P V+   G +   RL
Sbjct: 60  KEESVNTILEYVRQKE----DGRVDQVFVTGCLSERYKPDLEKEIPDVDAYFGTRDLPRL 115

Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
            + L            DY  E   ERL+     Y       A+L I EGCD+ C+FC +P
Sbjct: 116 LKAL----------GADYRHELVGERLTTTPANY-------AYLKIAEGCDRPCSFCAIP 158

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256
             RG   S+ +  +V EA  L   GV E+ L+ Q++  + G  L  +K   +DLL +L++
Sbjct: 159 LMRGGHRSQPVEDLVREAESLAAKGVKELILIAQDLT-YYGLDLY-KKRALADLLRALAK 216

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           ++G+  +R   + P      +++       +  Y+ +P+Q  SD ILKSM R  T  +  
Sbjct: 217 VEGIEWIRLHYAFPTGFPMDVLEVMRAEPKVCNYIDIPLQHISDPILKSMRRGTTRAKTT 276

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
           ++++  R   P +AI +  IVG+PGETD DF    + V +  + +   F YS    T   
Sbjct: 277 RLLEAFREKVPGMAIRTTLIVGYPGETDADFEILKEWVRETRFERLGCFTYSHEENTHAF 336

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS---- 432
           N+ + V E  K  R   + +   +     N   VG+    +I++   E G  +GR+    
Sbjct: 337 NLEDDVSEATKQARASEIMELQAQISWELNQEKVGKTFRCMIDRQ--EGGYFIGRTEFDS 394

Query: 433 PWLQS-VVLNSKNH--NIGDIIKVRITDVKISTLYGELVV 469
           P + + V +++  H   +GD  ++R+T+     L GE V 
Sbjct: 395 PDVDNEVRVDAAKHYLRVGDFAEIRVTEAGDFDLIGEPVA 434


>gi|237748960|ref|ZP_04579440.1| fe-s oxidoreductase [Oxalobacter formigenes OXCC13]
 gi|229380322|gb|EEO30413.1| fe-s oxidoreductase [Oxalobacter formigenes OXCC13]
          Length = 463

 Score =  351 bits (901), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 118/464 (25%), Positives = 192/464 (41%), Gaps = 46/464 (9%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
                S GC   + DS ++     ++GYE   +  DA L+++NTC   + A  +    + 
Sbjct: 6   TIGFVSLGCPKALVDSEKILTRLRAEGYETAETYQDAGLVIVNTCGFIDAAEAESLEAIA 65

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEE----ILRRSPIVNVVVGPQTYYRLPELLE 141
                            V+V GC+   + ++    I    P V  V GP     + + + 
Sbjct: 66  EALEENGK---------VIVTGCLGAKKDKDGSDFIRNIHPKVLDVTGPDAVSEVMDAVH 116

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           R               + F  L I   G        A+L I EGC   CTFC++P  RG 
Sbjct: 117 RYLP---------RPHEPFVDL-IPPQGIKLTPKHYAYLKISEGCSHHCTFCIIPDLRGD 166

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYS 253
            +S  + +V+DEA +L  +GV E+ ++ Q+  A+      R     G   K   + L  +
Sbjct: 167 LVSYPIGKVLDEAEQLFASGVKELLVISQDTGAYGLDTRFRTGFWGGRPVKTHVTQLTGA 226

Query: 254 LSEI----KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
           L ++       VRL Y   +P       I    +   ++PYL +P Q     +LK M R 
Sbjct: 227 LGKLARKYDAWVRLHYIYPYPHIDDIIPIM---NEGGVLPYLDVPFQHAHPDVLKRMKRP 283

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369
            +   + + I R R + PDI I S FI GFPGET+++F+  +D + +    +   F YSP
Sbjct: 284 ASGERHLEQIQRWRKMCPDITIRSTFITGFPGETEEEFQYLLDFLKEAKIDRLGCFPYSP 343

Query: 370 RLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK--HGKEKGK 427
             G P + +   V   V+ ER   L +   +         +G+ + VL+++   G   G+
Sbjct: 344 VEGAPANALPGAVPGEVREERRARLMQLQEDISFERLQGKIGKTLRVLVDETIRGGAAGR 403

Query: 428 LVGRSPWLQSVVLNSKN------HNIGDIIKVRITDVKISTLYG 465
               +P +  VV   K          G+ + V I D     L+G
Sbjct: 404 SSADAPEIDGVVYVRKPKGMRRKLLPGEFVNVTIEDADAHDLWG 447


>gi|220924966|ref|YP_002500268.1| ribosomal protein S12 methylthiotransferase [Methylobacterium
           nodulans ORS 2060]
 gi|219949573|gb|ACL59965.1| MiaB-like tRNA modifying enzyme YliG [Methylobacterium nodulans ORS
           2060]
          Length = 437

 Score =  351 bits (901), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 134/456 (29%), Positives = 203/456 (44%), Gaps = 37/456 (8%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC   + DS R+     ++GYE     D AD++++NTC   + A  +    +G
Sbjct: 6   KISFVSLGCPKALVDSERILTHLRAEGYELARKHDGADVVIVNTCGFLDSAKAESLQAIG 65

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                         +  V+V GC+  A+ +EI  + P +  + GPQ Y  +   +  A  
Sbjct: 66  EA---------MAENGRVIVTGCMG-AQPDEIRDKYPNLLAITGPQAYESVVAAVHEA-- 113

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                       D F  L +   G        A+L I EGC+  CTFC++P  RG  +SR
Sbjct: 114 -------VPPAHDPFLDL-VPPQGVKLTPRHYAYLKISEGCNNRCTFCIIPSLRGDLVSR 165

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL--------DGE-KCTFSDLLYSLSE 256
               V+ EA KL+  GV E+ ++ Q+ +A  G  L        DGE +  F DL  +L E
Sbjct: 166 PAGDVLREAEKLVKAGVKELLVISQDTSA-YGVDLRYAPSPWRDGEVRARFYDLARALGE 224

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
               VRL Y   +P       + A G    ++PYL +P+Q  S  +LK M R     +  
Sbjct: 225 FGVWVRLHYVYPYPHVDEVIPLMAEGT---VLPYLDMPLQHASPSVLKRMRRPANQEKML 281

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
           + I   RS  PD+AI S FIVGFPGET+ +F   +  + +    +   F Y P  G   +
Sbjct: 282 ERIRSWRSTCPDLAIRSTFIVGFPGETEAEFEELLAWLAEAKLERVGCFPYEPVKGAAAN 341

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK--EKGKLVGRSPW 434
            + E V E VKAER     +           A VG+ + V+I++ G    KG+    +P 
Sbjct: 342 GVAELVPEEVKAERYRRFMEAQAVISARLQKAKVGKRLPVIIDEAGPTVAKGRSKYDAPE 401

Query: 435 LQS-VVLN-SKNHNIGDIIKVRITDVKISTLYGELV 468
           +   V +   +    GDI+ V+I       L+G  V
Sbjct: 402 IDGSVHVAFRRPVRAGDIVTVKIERADTYDLHGIAV 437


>gi|291535169|emb|CBL08281.1| MiaB-like tRNA modifying enzyme [Roseburia intestinalis M50/1]
          Length = 435

 Score =  351 bits (901), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 124/439 (28%), Positives = 215/439 (48%), Gaps = 23/439 (5%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++  + + GC++N Y++  M+ +  + GYE V   + AD+ V+NTC +   A  K     
Sbjct: 2   KKAALHNLGCKVNAYETEAMQQILENAGYEIVPFTEIADVYVINTCSVTNMADRKSRQMF 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R +       K   D +VV AGC  Q   E        +++V+G    + L  LL    
Sbjct: 62  HRAK-------KMNPDAIVVGAGCYVQT-KEAQALVDESIDIVIGNNQKHELVTLLNEYE 113

Query: 145 FGK----RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
                  ++VD ++  ++  E                AF+ +Q+GC++FC++C++P+ RG
Sbjct: 114 KEHTKQAQIVDINHEKQEYEELHL-----KKTAEHTRAFIKVQDGCNQFCSYCIIPFARG 168

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
              SR +  V++E + L  +G  E+ L G +++++   G+D  +   S L+  + EI+G+
Sbjct: 169 RVRSRKMEDVLNEIKGLAKSGYKEVVLTGIHLSSY---GVDTGETLLS-LIEHVHEIEGI 224

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R  +  PR +++   K   +L  + P+ HL +QSG D +LK MNRR+   EY    D
Sbjct: 225 ERIRLGSLEPRIVTEDFAKRLSELTKICPHFHLSLQSGCDSVLKRMNRRYDTAEYEAGCD 284

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
            +R      AI++D IVGFPGET+++F+ T + + KI + +   FKYS R GT  + M +
Sbjct: 285 LLRKYFTHPAITTDVIVGFPGETEEEFKITEEYLKKIHFYEMHIFKYSVREGTKAAVMPD 344

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG--KLVGRSPWLQSV 438
           QV E  K ER   L    ++    F +  VG+    L+E+     G     G +     V
Sbjct: 345 QVPEQKKTERSNILLSLEKKMSEEFRNYYVGKEKTALLEEELVVDGKTYFTGYTKEYVKV 404

Query: 439 VLNSKNHNIGDIIKVRITD 457
              ++ +     +  +I  
Sbjct: 405 AFETEKNMANQFVTGKIKG 423


>gi|260459455|ref|ZP_05807710.1| MiaB-like tRNA modifying enzyme YliG [Mesorhizobium opportunistum
           WSM2075]
 gi|259035009|gb|EEW36265.1| MiaB-like tRNA modifying enzyme YliG [Mesorhizobium opportunistum
           WSM2075]
          Length = 437

 Score =  351 bits (900), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 137/456 (30%), Positives = 212/456 (46%), Gaps = 36/456 (7%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R    S GC   + DS R+     ++GYE     D ADL+V+NTC   + A ++  + +G
Sbjct: 5   RVSFVSLGCPKALVDSERIITRLRAEGYEIARKHDGADLVVVNTCGFLDSARDESLNAIG 64

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
              +          +  V+V GC+  AE + I  + P V  + GPQ Y  +   +  A  
Sbjct: 65  SALS---------ENGRVIVTGCLG-AEPDVIREKHPNVLAITGPQAYESVMAAVHEAAP 114

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                  D           +   G        A+L I EGC+  CTFC++P  RG  +SR
Sbjct: 115 PSHDPYIDL----------LPPQGVKLTPRHYAYLKISEGCNNRCTFCIIPALRGDLVSR 164

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAW-----RGKGLDGEK---CTFSDLLYSLSEI 257
             + V+ EA KL   GV E+ ++ Q+ +A+         L G++     F DL   L ++
Sbjct: 165 PAADVLREAEKLAKAGVKELLVISQDTSAYGIDIKYQTSLFGDREVRAKFLDLSQELGKL 224

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
              VR+ Y   +P       + A G    ++PYL +P Q  S ++LK+M R     +  +
Sbjct: 225 GIWVRMHYVYPYPHVADVIPLMAEG---KILPYLDIPFQHASPQVLKNMRRPAHGEKTLE 281

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
            I   R V PD+AI S FIVGFPGETDDDF   +D +D+    +A  FKY P  G   ++
Sbjct: 282 RIRGWRDVCPDLAIRSTFIVGFPGETDDDFEMLLDWLDEAKIDRAGCFKYEPVRGARSND 341

Query: 378 M-LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKH--GKEKGKLVGRSPW 434
           + LEQV + +K  R     ++ ++   +     VG+ + VLI++      KG+    +P 
Sbjct: 342 LGLEQVPQEIKEARWHRFMQRQQKISATQLAKKVGKRLPVLIDEAHGTSAKGRTKYDAPE 401

Query: 435 LQS-VVLNS-KNHNIGDIIKVRITDVKISTLYGELV 468
           +   V + S +    GDI+ V+I       LYG  V
Sbjct: 402 IDGSVHIQSRRPLRAGDIVTVKIDRADAYDLYGSAV 437


>gi|326563981|gb|EGE14230.1| MiaB family tRNA modifying enzyme [Moraxella catarrhalis 103P14B1]
 gi|326567631|gb|EGE17739.1| MiaB family tRNA modifying enzyme [Moraxella catarrhalis 12P80B1]
 gi|326569488|gb|EGE19548.1| MiaB family tRNA modifying enzyme [Moraxella catarrhalis BC8]
 gi|326577001|gb|EGE26896.1| MiaB family tRNA modifying enzyme [Moraxella catarrhalis 101P30B1]
 gi|326577473|gb|EGE27357.1| MiaB family tRNA modifying enzyme [Moraxella catarrhalis O35E]
          Length = 458

 Score =  351 bits (900), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 128/461 (27%), Positives = 200/461 (43%), Gaps = 37/461 (8%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC   + DS R+      +GY+  N  D ADL+V+NTC   E A ++    +G
Sbjct: 11  KIGFVSLGCPKALVDSERIITELTYEGYQVANDYDGADLVVVNTCGFIESAVQESLDAIG 70

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                         +  V+V GC+   + E+I    P V  V G   Y  +   +     
Sbjct: 71  EA---------INKNGKVIVTGCLG-KDAEKIRTMHPAVLAVTGAHAYEEVISAV----- 115

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
              V     S E   +   I D G        A++ I EGC+  CTFC++P  RG  +SR
Sbjct: 116 NHHVPKPIKSKEYDPKIDLINDAGIKLTPKHYAYVKISEGCNHRCTFCIIPSLRGDLVSR 175

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE---------KCTFSDLLYSLSE 256
            +  V+ EA  L  +GV E+ ++ Q+ +A  G  L  +         K  F D+  ++S+
Sbjct: 176 PIDSVMKEAVALKKSGVKELLVISQDTSA-YGVDLKYKTVFWEGWPLKSKFYDMCEAMSK 234

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKA-----HGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
           +   VRL Y   +P   +   I A        +  L+PYL +P Q  S  +LK+M R   
Sbjct: 235 LGIWVRLHYVYPYPHVDAVVQIMADSMTASAGMGGLLPYLDIPFQHASPNVLKAMKRPAM 294

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
           +    + I   R++ PDI I S F+VGFPGETD+DF   +D + K    +   F YS   
Sbjct: 295 SENTLERIQAWRAICPDIVIRSTFVVGFPGETDEDFEYLLDWLTKARLDRVGCFTYSEIE 354

Query: 372 GTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR 431
           G   +++   V E+VK  R   L    ++         VG+ + VL+++   E+   + R
Sbjct: 355 GAVANDLPNPVPESVKQSRYERLMALQQKISAEKLAEKVGKTLVVLVDEIDTEENIAICR 414

Query: 432 S----PWLQSVVLNSK---NHNIGDIIKVRITDVKISTLYG 465
           S    P +   V           GD++ V I +     L+ 
Sbjct: 415 SYADAPEIDGHVYVDNIDATVKAGDMLTVVIDEASDYDLFA 455


>gi|149045300|gb|EDL98386.1| CDK5 regulatory subunit associated protein 1-like 1 (predicted),
           isoform CRA_c [Rattus norvegicus]
          Length = 578

 Score =  351 bits (900), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 116/457 (25%), Positives = 210/457 (45%), Gaps = 18/457 (3%)

Query: 14  VSQIVDQCIVP-QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHI 72
            S   D  I   Q+ +++++GC  N  D   M     + GY+   +  DADL +LN+C +
Sbjct: 51  PSPPSDSTIPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTV 110

Query: 73  REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT 132
           +  A +   + + +                VV+AGCV QA+  +   +      ++G Q 
Sbjct: 111 KNPAEDHFRNSIKKAHEENKK---------VVLAGCVPQAQPRQDYLKG---LSIIGVQQ 158

Query: 133 YYRLPELLERARFGKRVVDTDYSVED-KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCT 191
             R+ E++E    G  V       E  K    + +D    RK  +   ++I  GC   CT
Sbjct: 159 IDRVVEVVEETIKGHSVRLLGQKKESGKRLGGARLDLPKIRKNPLIEIISINTGCLNACT 218

Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLL 251
           +C   + RG   S  + ++V+ A++    GVCEI L  ++  A  G+ +  +  T    L
Sbjct: 219 YCKTKHARGNLASYPIDELVERAKQSFQEGVCEIWLTSEDTGA-YGRDIGTDLPTLLWKL 277

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
             +     ++RL  T           +    +   +  +LH+PVQS SD +L  M R + 
Sbjct: 278 VEVIPEGAMLRLGMTNPPYILEHLEEMAKILNHPRVYAFLHIPVQSASDSVLMDMKREYC 337

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
             ++++++D ++   P I I++D I GFPGETD DF+ T+ LV++  +   F  ++ PR 
Sbjct: 338 VADFKRVVDFLKEKVPGITIATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRP 397

Query: 372 GTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR 431
           GTP +   +QV  +VK +R   L +       +  D  +G+  +VL+ +   +    V  
Sbjct: 398 GTPAAK-AKQVPAHVKKQRTKDLSRVF--HSYNPYDHKIGERQQVLVTEESFDSKFYVAH 454

Query: 432 SPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           + + + V++      +G +++V I +     L G+ V
Sbjct: 455 NRFYEQVLVPKNPAFMGKMVEVDIYESGKHFLKGQPV 491


>gi|326561620|gb|EGE11958.1| MiaB family tRNA modifying enzyme [Moraxella catarrhalis 46P47B1]
          Length = 458

 Score =  351 bits (900), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 128/461 (27%), Positives = 201/461 (43%), Gaps = 37/461 (8%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC   + DS R+      +GY+  N+ D ADL+V+NTC   E A ++    +G
Sbjct: 11  KIGFVSLGCPKALVDSERIITELTYEGYQVANNYDGADLVVVNTCGFIESAVQESLDAIG 70

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                         +  V+V GC+   + E+I    P V  V G   Y  +   +     
Sbjct: 71  EA---------INKNGKVIVTGCLG-KDAEKIRTMHPAVLAVTGAHAYEEVISAV----- 115

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
              V     S E   +   I D G        A++ I EGC+  CTFC++P  RG  +SR
Sbjct: 116 NHHVPKPIKSKEYDPKIDLINDAGIKLTPKHYAYVKISEGCNHRCTFCIIPSLRGDLVSR 175

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE---------KCTFSDLLYSLSE 256
            +  V+ EA  L  +GV E+ ++ Q+ +A  G  L  +         K  F D+  ++S+
Sbjct: 176 PIDSVMKEAVALKKSGVKELLVISQDTSA-YGVDLKYKTVFWEGWPLKSKFYDMCEAMSK 234

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKA-----HGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
           +   VRL Y   +P   +   I A        +  L+PYL +P Q  S  +LK+M R   
Sbjct: 235 LGIWVRLHYVYPYPHVDAVVQIMADSMTASAGMGGLLPYLDIPFQHASPNVLKAMKRPAM 294

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
           +    + I   R++ PDI I S F+VGFPGETD+DF   +D + K    +   F YS   
Sbjct: 295 SENTLERIQAWRAICPDIVIRSTFVVGFPGETDEDFEYLLDWLTKARLDRVGCFTYSEIE 354

Query: 372 GTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR 431
           G   +++   V E+VK  R   L    ++         VG+ + VL+++   E+   + R
Sbjct: 355 GAVANDLPNPVPESVKQSRYERLMALQQKISAEKLAEKVGKTLVVLVDEIDTEENIAICR 414

Query: 432 S----PWLQSVVLNSK---NHNIGDIIKVRITDVKISTLYG 465
           S    P +   V           GD++ V I +     L+ 
Sbjct: 415 SYADAPEIDGHVYVDNIDATVKAGDMLTVVIDEASDYDLFA 455


>gi|257462828|ref|ZP_05627234.1| Fe-S oxidoreductase [Fusobacterium sp. D12]
 gi|317060457|ref|ZP_07924942.1| Fe-S oxidoreductase [Fusobacterium sp. D12]
 gi|313686133|gb|EFS22968.1| Fe-S oxidoreductase [Fusobacterium sp. D12]
          Length = 436

 Score =  351 bits (900), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 122/441 (27%), Positives = 225/441 (51%), Gaps = 16/441 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +R    + GC++N Y+S  +++    +GYE V     AD+ ++N+C +   A  K  + L
Sbjct: 5   KRVAFYTLGCKVNQYESESIKNQLLQKGYEEVGFETTADVYIVNSCTVTSIADRKTRNML 64

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R +       K+     V+V GC A+   +++L     ++ V+G +    +   +E   
Sbjct: 65  RRAK-------KQNPLGKVIVTGCYAETNRKDLL-EMEEIDFVIGNKDKNAVANFVEEIH 116

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
             +R    +   ++K  +          +    A++ IQ+GC++FC++C +P+ RG   S
Sbjct: 117 NQERGEREESIFQEKEYQ---EYEFATFREMTRAYVKIQDGCNEFCSYCKIPFARGRSRS 173

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R   +V++E  KL+  G  EI L+G N+    GK L  E+  F DL+ ++ +   L R+R
Sbjct: 174 RRPEKVLEEIDKLLVEGFREIILIGINLG-DYGKDLK-EEINFEDLVRNILKKDLLQRVR 231

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
             + +P  +++  +    D   +MP+LH+ +QS  D +L++M R +      + +  +R 
Sbjct: 232 IGSVYPDRITESFMTLF-DHPKMMPHLHISLQSCDDTVLRNMRRNYGKDVILKTLFSLRK 290

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             P +  ++D IVGFPGET++ F+ T D ++KIG++    F YS R GT  S M  ++  
Sbjct: 291 KVPMMEYTADVIVGFPGETEEMFQNTYDSLEKIGFSHLHIFPYSDREGTIASRMEHKIQT 350

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
            VK ER+  L+   ++ +       +G+ +EVLIE+  ++ G   G SP    V +  KN
Sbjct: 351 GVKRERVGILENLQKKIEEDRRKYYLGKRLEVLIEE--EKDGYWWGYSPNYLRVKIRGKN 408

Query: 445 HNIGDIIKVRITDVKISTLYG 465
            +I  +++V++  V+   L  
Sbjct: 409 LSINSMVQVKVEQVEKGVLVA 429


>gi|253701179|ref|YP_003022368.1| MiaB-like tRNA modifying enzyme [Geobacter sp. M21]
 gi|251776029|gb|ACT18610.1| MiaB-like tRNA modifying enzyme [Geobacter sp. M21]
          Length = 429

 Score =  351 bits (900), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 125/446 (28%), Positives = 203/446 (45%), Gaps = 20/446 (4%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + +   + + GC++N ++S  M       GY  V     AD+ V+N+C +  K   +   
Sbjct: 1   MSKTIAITTLGCKINQFESAAMTQALEQNGYSMVPFSAKADIYVVNSCTVTAKTDAESRR 60

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            + R   L         +  VVV GC AQ  GEE+L+ +  VN+++G      +   LE 
Sbjct: 61  LIRRATRL-------NPEARVVVTGCYAQMNGEELLKLA-GVNLILGNSEKKDIVGFLEG 112

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
                R V +D S+E   E   +            AFL +Q GCD  C +C+VP+ RG  
Sbjct: 113 LDDQPRAVVSDISLEKTGETAPL----ETFAEHTRAFLQVQNGCDARCAYCIVPFARGAS 168

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            S ++ + +D        G  EI L G ++ A  G  L         L+    +   + R
Sbjct: 169 RSVAVQEALDGMAAFAAQGFQEIVLTGIHLGA-YGLDL-APPTDLLGLMRKAQDQGAVRR 226

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LR  +  P ++S  LI   G   +  P+LHLP+QSGSD +L  MNR +    + +++  +
Sbjct: 227 LRIGSVEPTEVSRQLIDFMGTSTIACPHLHLPLQSGSDSVLSRMNRGYDTALFAEVVHSL 286

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
            S  P++ I SD I GFPGE+D +F  T   +D +  A    F +S R GTP + M  QV
Sbjct: 287 VSAMPEVCIGSDVIAGFPGESDREFDETYRFIDSLPLAYLHVFPFSQRPGTPAATMTPQV 346

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
           +  V  ER   L+     ++  +    VG+ ++VL+++  K      G S    +V++  
Sbjct: 347 NPKVIKERAEALRVLSERKKSDYAAGFVGRELQVLVQRGEK------GLSRNYLTVLVED 400

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
               +   + V +T  K   L   ++
Sbjct: 401 SEGLVNREVTVLVTGAKGGELTARVL 426


>gi|326561181|gb|EGE11546.1| MiaB family tRNA modifying enzyme [Moraxella catarrhalis 7169]
 gi|326567931|gb|EGE18028.1| MiaB family tRNA modifying enzyme [Moraxella catarrhalis BC1]
          Length = 458

 Score =  351 bits (900), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 128/461 (27%), Positives = 200/461 (43%), Gaps = 37/461 (8%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC   + DS R+      +GY+  N  D ADL+V+NTC   E A ++    +G
Sbjct: 11  KIGFVSLGCPKALVDSERIITELTYEGYQVANDYDGADLVVVNTCGFIESAVQESLDAIG 70

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                         +  V+V GC+   + E+I    P V  V G   Y  +   +     
Sbjct: 71  EA---------INKNGKVIVTGCLG-KDAEKIRTMHPAVLAVTGAHAYEEVISAV----- 115

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
              V     S E   +   I D G        A++ I EGC+  CTFC++P  RG  +SR
Sbjct: 116 NHHVPKPIKSKEYDPKIDLINDAGIKLTPKHYAYVKISEGCNHRCTFCIIPSLRGDLVSR 175

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE---------KCTFSDLLYSLSE 256
            +  V+ EA  L  +GV E+ ++ Q+ +A  G  L  +         K  F D+  ++S+
Sbjct: 176 PIDSVMKEAVALKKSGVKELLVISQDTSA-YGVDLKYKTVFWEGWPLKSKFYDMCEAMSK 234

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKA-----HGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
           +   VRL Y   +P   +   I A        +  L+PYL +P Q  S  +LK+M R   
Sbjct: 235 LGIWVRLHYVYPYPHVDAVVQIMADSMTASAGMGGLLPYLDIPFQHASPNVLKAMKRPAM 294

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
           +    + I   R++ PDI I S F+VGFPGETD+DF   +D + K    +   F YS   
Sbjct: 295 SENTLERIQAWRAICPDIVIRSTFVVGFPGETDEDFEYLLDWLTKARLDRVGCFTYSEIE 354

Query: 372 GTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR 431
           G   +++   V E+VK  R   L    ++         VG+ + VL+++   E+   + R
Sbjct: 355 GAVANDLPNPVPESVKQSRYERLMALQQKISAEKLAEKVGKTLVVLVDEIDTEENIAICR 414

Query: 432 S----PWLQSVVLNSK---NHNIGDIIKVRITDVKISTLYG 465
           S    P +   V           GD++ V I +     L+ 
Sbjct: 415 SYADAPEIDGHVYVDNIDATVKAGDMLTVVIDEASDYDLFA 455


>gi|114605648|ref|XP_001171161.1| PREDICTED: CDK5 regulatory subunit associated protein 1-like 1
           isoform 3 [Pan troglodytes]
 gi|114605650|ref|XP_001171227.1| PREDICTED: CDK5 regulatory subunit associated protein 1-like 1
           isoform 5 [Pan troglodytes]
          Length = 579

 Score =  351 bits (900), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 116/460 (25%), Positives = 211/460 (45%), Gaps = 18/460 (3%)

Query: 11  AHMVSQIVDQCIVP-QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNT 69
               S   D  I   Q+ +++++GC  N  D   M     + GY+   +  DADL +LN+
Sbjct: 49  EEENSPPSDSTIPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNS 108

Query: 70  CHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG 129
           C ++  A +   + + + +              +V+AGCV QA+  +   +      ++G
Sbjct: 109 CTVKNPAEDHFRNSIKKAQEENKK---------IVLAGCVPQAQPRQDYLKG---LSIIG 156

Query: 130 PQTYYRLPELLERARFGKRVVDTDYSVED-KFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
            Q   R+ E++E    G  V       ++ +    + +D    RK  +   ++I  GC  
Sbjct: 157 VQQIDRVVEVVEETIKGHSVRLLGQKKDNGRRLGGARLDLPKIRKNPLIEIISINTGCLN 216

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS 248
            CT+C   + RG   S  + ++VD A++    GVCEI L  ++  A  G+ +     T  
Sbjct: 217 ACTYCKTKHARGNLASYPIDELVDRAKQSFQEGVCEIWLTSEDTGA-YGRDIGTNLPTLL 275

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
             L  +     ++RL  T           +    +   +  +LH+PVQS SD +L  M R
Sbjct: 276 WKLVEVIPEGAMLRLGMTNPPYILEHLEEMAKILNHPRVYAFLHIPVQSASDSVLMEMKR 335

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
            +   ++++++D ++   P I I++D I GFPGETD DF+ T+ LV++  +   F  ++ 
Sbjct: 336 EYCVADFKRVVDFLKEKVPGITIATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFY 395

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL 428
           PR GTP + M EQV   VK +R   L +       S  D  +G+  +VL+ +   +    
Sbjct: 396 PRPGTPAAKM-EQVPAQVKKQRTKDLSRVF--HSYSPYDHKIGERQQVLVTEESFDSKFY 452

Query: 429 VGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           V  + + + V++      +G +++V I +     + G+ V
Sbjct: 453 VAHNQFYEQVLVPKNPAFMGKMVEVDIYESGKHFMKGQPV 492


>gi|325285087|ref|YP_004260877.1| MiaB-like tRNA modifying enzyme [Cellulophaga lytica DSM 7489]
 gi|324320541|gb|ADY28006.1| MiaB-like tRNA modifying enzyme [Cellulophaga lytica DSM 7489]
          Length = 442

 Score =  351 bits (900), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 126/445 (28%), Positives = 212/445 (47%), Gaps = 17/445 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + ++    + GC++N  ++  +   F  +G++RV+  + AD+ V+NTC + E A +    
Sbjct: 1   MKKKVAFYTLGCKLNFSETSTIARSFVDEGFDRVDFAEAADMYVINTCSVTENADK---- 56

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
              R +++     K+  D  V   GC AQ + EE+      V++V+G    +++ + +  
Sbjct: 57  ---RFKSIVKQAQKKNPDAFVAAVGCYAQLKPEELAAVD-GVDLVLGATEKFKITDYIND 112

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
                   D       + E      G Y       AFL +Q+GCD  CT+C +P  RGI 
Sbjct: 113 LSKN----DFGEVHSCEIEDADFYVGSYAIGDRTRAFLKVQDGCDYKCTYCTIPLARGIS 168

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK---CTFSDLLYSLSEIKG 259
            S +L  V+  A ++    + EI L G N+    GKG  G K    TF DL+ +L  + G
Sbjct: 169 RSDTLENVLKNATEISAKNIKEIVLTGVNIG-DYGKGEFGNKKHQHTFLDLVKALDTVDG 227

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           + RLR ++  P  + +  I      +  +P+ H+P+QSGSD ILK M RR+    Y   +
Sbjct: 228 IHRLRISSIEPNLLKNETIDFVSKSNSFVPHFHIPLQSGSDTILKLMRRRYLTNLYIDRV 287

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            +I+ V P   I  D IVGFPGETD+ F  T   ++++  +    F YS R  T  + M 
Sbjct: 288 AKIKEVMPHACIGVDVIVGFPGETDEHFLETYHFLNELNISYLHVFTYSERDNTVAAEMD 347

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV 439
             V +NV+A+R   L+    +++ +F ++ +G    VL E   KE G + G +     V 
Sbjct: 348 NVVPKNVRAKRSKMLRGLSVKKRRAFYESQLGSTRTVLFESENKE-GYINGFTENYVKVK 406

Query: 440 LNSKNHNIGDIIKVRITDVKISTLY 464
                  +  +  + +T++    L 
Sbjct: 407 APWNPELVNTLHTITLTEIDEDGLV 431


>gi|291459579|ref|ZP_06598969.1| RNA modification enzyme, MiaB-family [Oribacterium sp. oral taxon
           078 str. F0262]
 gi|291417857|gb|EFE91576.1| RNA modification enzyme, MiaB-family [Oribacterium sp. oral taxon
           078 str. F0262]
          Length = 426

 Score =  351 bits (900), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 133/453 (29%), Positives = 211/453 (46%), Gaps = 44/453 (9%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQ--GYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           + ++ S GC  N  DS ++      +  G    +  ++A+L ++NTC     A E+    
Sbjct: 2   KLYMVSLGCDKNRVDSEKLLSSLLLKHPGSSVTDDPEEAELAIVNTCSFIGPAKEESIQT 61

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL-LER 142
           +  +   K    K      ++VAGC+A+   EEI +  P V+ V+G   Y    +L +ER
Sbjct: 62  ILALGEYK----KTARLQKLLVAGCLAERYREEIRKELPEVDEVIGVSDYVSRLDLQMER 117

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
              G++  D                           +L I EGCDK+C++C++P  RG  
Sbjct: 118 VASGEQYSD---------------------------YLKIAEGCDKYCSYCIIPKLRGHY 150

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            S  +  ++ EA +L   GV E+ L+ Q      G  L G+K    +L+  LS ++G+  
Sbjct: 151 RSIPMEHLLREAEQLSLRGVKELNLVAQETT-LYGTDLYGKKA-LPELIQRLSAVEGIEW 208

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R    +P ++   LI+   D   L  YL LP+Q  SDRIL  M RR  A E R+ I  +
Sbjct: 209 IRLLYCYPEEIELPLIREIRDNAKLCHYLDLPIQHASDRILGRMRRRTRASELREKIALL 268

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R   PDI + +  I GFPGE+++DFR  +D   ++ + +   F YS   GT  + M  Q+
Sbjct: 269 RREIPDITLRTTLITGFPGESEEDFRELLDFTRELRFDRLGVFPYSREEGTAAAEMEGQL 328

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQS- 437
            E +K ER   L +  +          +G+ + VLI  +       + RS    P + S 
Sbjct: 329 PEKLKRERWKKLMELQQGIAFEKAKEQIGRRLRVLITAYDPGAKHYIARSYMDAPEIDSF 388

Query: 438 VVLNSK---NHNIGDIIKVRITDVKISTLYGEL 467
           V +N+    N   GD+ +VRIT  +   L GEL
Sbjct: 389 VYVNAGSRRNLLAGDMRQVRITGSRGYDLIGEL 421


>gi|242075846|ref|XP_002447859.1| hypothetical protein SORBIDRAFT_06g017040 [Sorghum bicolor]
 gi|241939042|gb|EES12187.1| hypothetical protein SORBIDRAFT_06g017040 [Sorghum bicolor]
          Length = 623

 Score =  351 bits (900), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 124/462 (26%), Positives = 215/462 (46%), Gaps = 24/462 (5%)

Query: 9   GVAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLN 68
            VA    Q   +    Q  +VK++GC  N  DS  M     + GY      + ADL ++N
Sbjct: 39  RVAQAPPQPEARIPGTQTIYVKTFGCSHNQSDSEYMSGQLSAFGYAITEEPEGADLWLIN 98

Query: 69  TCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVV 128
           TC ++  +   + + + + +N             +VVAGCV Q  G + L+    ++++ 
Sbjct: 99  TCTVKNPSQSAMTTLISKCKNANKP---------LVVAGCVPQ--GSQGLKELEGISII- 146

Query: 129 GPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
           G Q   R+ E++E    G  V             L  +D    RK      L I  GC  
Sbjct: 147 GVQQIDRVVEVVEETLKGHEVRLLSRKT------LPSLDLPKVRKNKFIEILPINVGCLG 200

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS 248
            CT+C   + RG   S ++  +VD  + ++  GV EI L  ++  A  G+ +        
Sbjct: 201 ACTYCKTKHARGHLGSYTIDSLVDRVKTVVSEGVREIWLSSEDTGA-YGRDISTNLPNLL 259

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCL--IKAHGDLDVLMPYLHLPVQSGSDRILKSM 306
           + + +   +     LR   ++P  + + L  I A      +  +LH+PVQSGSD +L +M
Sbjct: 260 NAIVAELPVDQSTMLRIGMTNPPFILEHLKEIAAVLCHPCVYSFLHVPVQSGSDAVLTAM 319

Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
           NR +T  E+R+++D +  + P + I++D I GFPGETD+DF  T++LV +  + Q    +
Sbjct: 320 NREYTVAEFRKVVDTLYELVPGMQIATDIICGFPGETDEDFSETVNLVKEYQFPQVHISQ 379

Query: 367 YSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG 426
           + PR GTP + M ++V  N   +R   L      +  S      G++  + I +   +  
Sbjct: 380 FYPRPGTPAARM-KKVPSNEVKKRSRELTSVF--ELFSPYQGMEGKVERIWITEIATDGV 436

Query: 427 KLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            LVG +     V++ + +  +G    V+IT V   +++GE++
Sbjct: 437 HLVGHTKGYIQVLVIAPDSLLGTSANVKITSVGRWSVFGEVI 478


>gi|221067926|ref|ZP_03544031.1| MiaB-like tRNA modifying enzyme YliG [Comamonas testosteroni KF-1]
 gi|220712949|gb|EED68317.1| MiaB-like tRNA modifying enzyme YliG [Comamonas testosteroni KF-1]
          Length = 468

 Score =  351 bits (900), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 129/484 (26%), Positives = 211/484 (43%), Gaps = 51/484 (10%)

Query: 15  SQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIRE 74
           S    Q  +P+  FV S GC   + DS  +     ++GY+   + + ADL+++NTC   +
Sbjct: 6   SDSPTQTAIPKVGFV-SLGCPKALTDSELILTQLSAEGYQTSKTFEGADLVIVNTCGFID 64

Query: 75  KAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEE-----ILRRSPIVNVVVG 129
            A ++    +G                 V+V GC+    G++     +    P V  V G
Sbjct: 65  DAVKESLDTIGEALAANGK---------VIVTGCLGAKAGKDGGSTMVAEVHPSVLAVTG 115

Query: 130 PQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKF 189
           P     + + +            D          S  D G        A+L I EGC+  
Sbjct: 116 PHATQEVMDAVHTHLPKPHDPFVDLVP------GSFGDAGIKLTPKHYAYLKISEGCNHR 169

Query: 190 CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE 243
           CTFC++P  RG  +SR +  V+ EA+ L + GV E+ ++ Q+ +A+      R    DG+
Sbjct: 170 CTFCIIPSMRGDLVSRPIGDVLKEAKALFEGGVKELLVISQDTSAYGVDVKYRTGFWDGK 229

Query: 244 --KCTFSDLLYSLSEI----KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQS 297
             K    +L   L ++       VRL Y   +P   +   + A G    ++PYL +P+Q 
Sbjct: 230 PVKTRMLELADELGKLAQQHGAWVRLHYVYPYPTVDAVLPLMAEG---KILPYLDVPLQH 286

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
               +LK M R  +  +    I   R + P++ I S FI GFPGET+++F   ++ + + 
Sbjct: 287 SHPDVLKRMKRPASGEKNLDRIREWRKICPELVIRSTFIAGFPGETEEEFEHLLNFIREA 346

Query: 358 GYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVL 417
              +A  F YSP  G   + +   + E V+  R     +   E         VGQ+++VL
Sbjct: 347 EIDRAGCFAYSPVDGATANELPGMLPEEVREARRARFMEVAEEVSTQRLQRRVGQVMKVL 406

Query: 418 IEKH---GKEKGKLVGRS----PWLQSVVLN------SKNHNIGDIIKVRITDVKISTLY 464
           ++K    GK+ G  VGR+    P +  VV        SK + +G++I VRI   +   L 
Sbjct: 407 VDKAVSLGKKGG--VGRTYADAPEIDGVVHIQPPEKASKTYKVGELISVRIVGTQGHDLV 464

Query: 465 GELV 468
           G  V
Sbjct: 465 GVPV 468


>gi|153874656|ref|ZP_02002792.1| conserved hypothetical protein [Beggiatoa sp. PS]
 gi|152068880|gb|EDN67208.1| conserved hypothetical protein [Beggiatoa sp. PS]
          Length = 443

 Score =  351 bits (900), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 128/458 (27%), Positives = 200/458 (43%), Gaps = 39/458 (8%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC     DS R+     ++GY   +  +DA L+V+NTC   + A E+    +G
Sbjct: 9   KIGFISLGCPKATVDSERILTQLRAEGYLITSRYEDAHLVVVNTCGFIDDAVEESLEVIG 68

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                            V+V GC+    GE I  R P V  V GP     +   +     
Sbjct: 69  EALAENGK---------VIVTGCLGAR-GEMIKNRFPNVLAVTGPNALDEVITAIH---- 114

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                 T+   +       +  GG        A+L I EGC++ C+FC++P  RG  +S+
Sbjct: 115 ------TELPPQHDPYLDLVPPGGIKLTPRHYAYLKIAEGCNQKCSFCIIPTMRGRLVSQ 168

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE---------KCTFSDLLYSLSE 256
            +  ++DEA  LI+ GV E+ ++ Q+  A  G               K   ++L   L  
Sbjct: 169 PIGALLDEAEHLIEAGVRELLIVSQDTAA-YGVDTKYRLDFWQGTPLKTRITELARHLGN 227

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           +   VRL Y   +P    D L++   + D+++PYL +P+Q  +  ILK+M R        
Sbjct: 228 LSAWVRLHYVYPYPH--IDQLVELMAE-DLVLPYLDVPLQHANPTILKAMRRPADNEMML 284

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
           + I   R + PDI + S FIVGFPGETD  F   +  + +    +  +F YSP  G   +
Sbjct: 285 RRIAHWREICPDITLRSTFIVGFPGETDAAFEDLLAFIREARLDRVGAFAYSPVEGATAN 344

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE--KGKLVGRSPW 434
           ++ + V E +K ERL                A VGQ   VLI++   E    + V  +P 
Sbjct: 345 SLPDAVPEEIKQERLARFMTMQSTISAEKLQARVGQTNIVLIDEVMPEVIYARSVAEAPE 404

Query: 435 LQS-VVLNSKNHN---IGDIIKVRITDVKISTLYGELV 468
           +   V++ ++       GD I+V IT      LY E+V
Sbjct: 405 IDGTVIIKTEEELDLDPGDFIEVTITGADEHDLYAEVV 442


>gi|293400696|ref|ZP_06644841.1| Fe-S oxidoreductase [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291305722|gb|EFE46966.1| Fe-S oxidoreductase [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 441

 Score =  350 bits (899), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 121/434 (27%), Positives = 222/434 (51%), Gaps = 19/434 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
            F + + GC++N Y+S   E    ++GY++V+  + AD+ ++NTC +   A  K    + 
Sbjct: 3   TFAIATLGCKVNTYESQGYESALLAKGYQQVSFKEKADVYIINTCAVTNTAGSKSRQKIH 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           + + L         + L+ V GC  Q   E++ ++   V++++G      L + +E+A  
Sbjct: 63  QAKAL-------NQNALIAVVGCYVQTAKEQLEQQ-EHVDILIGSDGKRTLADRIEKALQ 114

Query: 146 GKRVVDTDYSVE--DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           G++ V+  + V     FE L I    +  +    AFL IQ+GC++FC++C++PY RG E 
Sbjct: 115 GEKQVNEIHDVRALRVFEALPIQHFEHQTR----AFLKIQDGCNQFCSYCIIPYARGAER 170

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           S    +V+  A+ L  +G  EI L G +     G+ ++        +     E+KGL R+
Sbjct: 171 SLPEDEVIKIAQDLCASGHQEIVLSGIHTG-RYGRDINTNLT--QLMKRMCKEVKGLRRI 227

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R ++    ++SD L+        +  +LH+P+QS ++ +LK+M+R +    +++ +  IR
Sbjct: 228 RISSIEMNEISDELLTFMQKEPKIARHLHIPIQSANNEVLKNMHRPYDVEWFKERVKYIR 287

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           S+ PDI+ISSD IVGFP E+++ F  TM+ + ++  +    F YS R  T  + M   ++
Sbjct: 288 SLMPDISISSDVIVGFPQESEEQFVDTMENIKQMELSFLHIFPYSRRDHTVAATMSGHLE 347

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
             +K ER   L +  +    ++    VG+ + VL EK  ++ G L G +     V  +  
Sbjct: 348 NKIKKERAARLAQCSKALYTAYKQKFVGKEVSVLFEK--EKDGMLFGHTSEYLEVYCSMD 405

Query: 444 NHNIGDIIKVRITD 457
              +  + +V IT 
Sbjct: 406 VKALHQMKQVVITS 419


>gi|93277076|ref|NP_060244.2| CDK5 regulatory subunit-associated protein 1-like 1 [Homo sapiens]
 gi|74747199|sp|Q5VV42|CDKAL_HUMAN RecName: Full=CDK5 regulatory subunit-associated protein 1-like 1
 gi|55665181|emb|CAH72474.1| CDK5 regulatory subunit associated protein 1-like 1 [Homo sapiens]
 gi|55665277|emb|CAH73074.1| CDK5 regulatory subunit associated protein 1-like 1 [Homo sapiens]
 gi|55665283|emb|CAH72467.1| CDK5 regulatory subunit associated protein 1-like 1 [Homo sapiens]
 gi|55665292|emb|CAH73706.1| CDK5 regulatory subunit associated protein 1-like 1 [Homo sapiens]
 gi|56202708|emb|CAI19768.1| CDK5 regulatory subunit associated protein 1-like 1 [Homo sapiens]
 gi|56202711|emb|CAI21023.1| CDK5 regulatory subunit associated protein 1-like 1 [Homo sapiens]
 gi|56202969|emb|CAI20280.1| CDK5 regulatory subunit associated protein 1-like 1 [Homo sapiens]
 gi|56205108|emb|CAI21687.1| CDK5 regulatory subunit associated protein 1-like 1 [Homo sapiens]
 gi|111309189|gb|AAI21021.1| CDK5 regulatory subunit associated protein 1-like 1 [Homo sapiens]
 gi|111309398|gb|AAI21022.1| CDK5 regulatory subunit associated protein 1-like 1 [Homo sapiens]
 gi|119575830|gb|EAW55426.1| CDK5 regulatory subunit associated protein 1-like 1, isoform CRA_b
           [Homo sapiens]
 gi|158256902|dbj|BAF84424.1| unnamed protein product [Homo sapiens]
          Length = 579

 Score =  350 bits (899), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 116/460 (25%), Positives = 211/460 (45%), Gaps = 18/460 (3%)

Query: 11  AHMVSQIVDQCIVP-QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNT 69
               S   D  I   Q+ +++++GC  N  D   M     + GY+   +  DADL +LN+
Sbjct: 49  EEENSPPSDSTIPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNS 108

Query: 70  CHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG 129
           C ++  A +   + + + +              +V+AGCV QA+  +   +      ++G
Sbjct: 109 CTVKNPAEDHFRNSIKKAQEENKK---------IVLAGCVPQAQPRQDYLKG---LSIIG 156

Query: 130 PQTYYRLPELLERARFGKRVVDTDYSVED-KFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
            Q   R+ E++E    G  V       ++ +    + +D    RK  +   ++I  GC  
Sbjct: 157 VQQIDRVVEVVEETIKGHSVRLLGQKKDNGRRLGGARLDLPKIRKNPLIEIISINTGCLN 216

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS 248
            CT+C   + RG   S  + ++VD A++    GVCEI L  ++  A  G+ +     T  
Sbjct: 217 ACTYCKTKHARGNLASYPIDELVDRAKQSFQEGVCEIWLTSEDTGA-YGRDIGTNLPTLL 275

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
             L  +     ++RL  T           +    +   +  +LH+PVQS SD +L  M R
Sbjct: 276 WKLVEVIPEGAMLRLGMTNPPYILEHLEEMAKILNHPRVYAFLHIPVQSASDSVLMEMKR 335

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
            +   ++++++D ++   P I I++D I GFPGETD DF+ T+ LV++  +   F  ++ 
Sbjct: 336 EYCVADFKRVVDFLKEKVPGITIATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFY 395

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL 428
           PR GTP + M EQV   VK +R   L +       S  D  +G+  +VL+ +   +    
Sbjct: 396 PRPGTPAAKM-EQVPAQVKKQRTKDLSRVF--HSYSPYDHKIGERQQVLVTEESFDSKFY 452

Query: 429 VGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           V  + + + V++      +G +++V I +     + G+ V
Sbjct: 453 VAHNQFYEQVLVPKNPAFMGKMVEVDIYESGKHFMKGQPV 492


>gi|326574032|gb|EGE23981.1| MiaB family tRNA modifying enzyme [Moraxella catarrhalis CO72]
          Length = 458

 Score =  350 bits (899), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 128/461 (27%), Positives = 200/461 (43%), Gaps = 37/461 (8%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC   + DS R+      +GY+  N  D ADL+V+NTC   E A ++    +G
Sbjct: 11  KIGFVSLGCPKALVDSERIITELTYEGYQVANDYDGADLVVVNTCGFIESAVQESLDAIG 70

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                         +  V+V GC+   + E+I    P V  V G   Y  +   +     
Sbjct: 71  EA---------INKNGKVIVTGCLG-KDAEKIRTMHPAVLAVTGAHAYEEVISAV----- 115

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
              V     S E   +   I D G        A++ I EGC+  CTFC++P  RG  +SR
Sbjct: 116 NHHVPKPIKSKEYDPKIDLINDAGIKLTPKHYAYVKISEGCNHRCTFCIIPSLRGDLVSR 175

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE---------KCTFSDLLYSLSE 256
            +  V+ EA  L  +GV E+ ++ Q+ +A  G  L  +         K  F D+  ++S+
Sbjct: 176 PIDSVMKEAVALKKSGVKELLVISQDTSA-YGVDLKYKTVFWEGWPLKSKFYDMCEAMSK 234

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKA-----HGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
           +   VRL Y   +P   +   I A        +  L+PYL +P Q  S  +LK+M R   
Sbjct: 235 LGIWVRLHYVYPYPHVDAVVQIMADSMTASAGMGGLLPYLDIPFQHASPNVLKAMKRPAM 294

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
           +    + I   R++ PDI I S F+VGFPGETD+DF   +D + K    +   F YS   
Sbjct: 295 SENTLERIQAWRAICPDIVIRSTFVVGFPGETDEDFEYLLDWLTKARLDRVGCFTYSEIE 354

Query: 372 GTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR 431
           G   +++   V E+VK  R   L    ++         VG+ + VL+++   E+   + R
Sbjct: 355 GAVANDLPNPVPESVKQSRYERLMALQQKISAEKLAEKVGKTLVVLVDEIDTEENIAICR 414

Query: 432 S----PWLQSVVLNSK---NHNIGDIIKVRITDVKISTLYG 465
           S    P +   V           GD++ V I +     L+ 
Sbjct: 415 SYADAPEIDGHVYVDNIDATVKAGDMLTVVIDEASNYDLFA 455


>gi|325282557|ref|YP_004255098.1| Ribosomal protein S12 methylthiotransferase rimO [Deinococcus
           proteolyticus MRP]
 gi|324314366|gb|ADY25481.1| Ribosomal protein S12 methylthiotransferase rimO [Deinococcus
           proteolyticus MRP]
          Length = 500

 Score =  350 bits (899), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 127/493 (25%), Positives = 219/493 (44%), Gaps = 53/493 (10%)

Query: 16  QIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREK 75
              +      R    S GC   + DS R+     ++GYE   + +DA  +++NTC     
Sbjct: 6   TPTEATAAAPRVGFISLGCPKALVDSERILTQLRAEGYEVAPNYEDAQAVIVNTCGFITP 65

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG------ 129
           A E+  S +G   +             V+V GC+ +   E+I+ R P V+ + G      
Sbjct: 66  AIEESLSAIGEALDATGK---------VIVTGCLGER-PEKIMERHPKVSAITGSEAVDD 115

Query: 130 ---------PQTYYRLPELLERARFGKRVVDTDY--SVEDKFERLSIVDGGYNRKRGVTA 178
                    P        LL     G R V         ++     +            A
Sbjct: 116 VMGHVRDLLPVNQDAFTGLLPVPAPGMRPVAAPAVGPEREQTRHGDVFAPSVRLTPRHYA 175

Query: 179 FLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW--- 235
           ++ + EGC+  C FC++P  RG+++SR    V+ EA +L+  G  E+ ++ Q+ +A+   
Sbjct: 176 YVKVAEGCNHTCAFCIIPKLRGLQVSRDAGSVLYEAFRLVAGGTKELVVIAQDTSAYGVD 235

Query: 236 ---RGKGLDGE--KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY 290
              R     GE  +   +DL   L E+   VR+ Y   +P       + A G    ++PY
Sbjct: 236 IRYRESEFQGEQVRAHLTDLAEKLGELGAWVRMHYVYPYPHVDRIVELMAQG---KILPY 292

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
           L +P+Q  S +IL++M R   A +    I R R + P++ I S FIVGFPGET++DF+  
Sbjct: 293 LDVPLQHASPKILRAMRRPG-AGKQLDTIRRWREICPELTIRSTFIVGFPGETEEDFQEL 351

Query: 351 MDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACV 410
           +D ++     +  +F YS       + +   V E VK ERL    +  +   ++     V
Sbjct: 352 LDFLEAAQLDRVGAFTYSEVPEADANALPGAVPEEVKEERLARFMEVAQRISMARLAQKV 411

Query: 411 GQIIEVLIEKHGKEKG-----KLVGRS----PWLQSVVL-----NSKNHNIGDIIKVRIT 456
           G++++V+I+++  ++G     +L+GR+    P +   V       +    +GDI++ RI 
Sbjct: 412 GRVMDVIIDEYNDDEGDQPGTRLIGRTKGDAPGIDGQVYLYAGDFAGQIKVGDIVQARIE 471

Query: 457 DVKISTLYGELVV 469
           D     L+GE+V 
Sbjct: 472 DSDEYDLFGEVVA 484


>gi|149372096|ref|ZP_01891366.1| possible 2-methylthioadenine synthetase [unidentified eubacterium
           SCB49]
 gi|149354863|gb|EDM43425.1| possible 2-methylthioadenine synthetase [unidentified eubacterium
           SCB49]
          Length = 449

 Score =  350 bits (899), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 126/447 (28%), Positives = 213/447 (47%), Gaps = 14/447 (3%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           I  ++    + GC++N  ++  +   F  +GYERV+  ++AD+ V+NTC + E A +   
Sbjct: 2   IAQKKVAFYTLGCKLNFSETSTIARDFTKEGYERVDFKEEADIYVVNTCSVTENADK--- 58

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
               R +++     K   D  V   GC AQ + EE+      V++V+G    ++LP  + 
Sbjct: 59  ----RFKSIVKQAQKVNPDAFVAAIGCYAQLKPEELADVD-GVDLVLGATEKFKLPFYIS 113

Query: 142 RARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
                      D  +   + E      G Y+      AFL +Q+GCD  CT+C +P  RG
Sbjct: 114 ELLASPDRSKGDAQIHSCEIEDADFYVGSYSIGDRTRAFLKVQDGCDYKCTYCTIPLARG 173

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK---CTFSDLLYSLSEI 257
           I  S +L  V+  A ++    + EI L G N+    GKG  G K    TF +L  +L E+
Sbjct: 174 ISRSDALENVLKNASEIAAQNIKEIVLTGVNIG-DYGKGEFGNKKHEHTFFELCQALDEV 232

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
            G+ RLR ++  P  + +  I         +P+ H+P+QSGS+ +LK M RR+    Y  
Sbjct: 233 AGIERLRISSIEPNLLKNETIDFVAQSKTFVPHFHIPLQSGSNTLLKLMKRRYMRELYVD 292

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
            + +I+ V P+  I  D IVGFPGETD+ F  T + +  +  +    F YS R  T  + 
Sbjct: 293 RVSQIKQVMPNACIGVDVIVGFPGETDELFLETYNFLTTLDISYLHVFTYSERENTEAAT 352

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQS 437
           M   V + V+A+R   L+    +++ +F ++ +   + VL E   KE G + G +     
Sbjct: 353 MEGVVPKKVRAKRSKMLRGLSAKKRRAFYESQLNNTLTVLFEGENKE-GFIHGFTENYVK 411

Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLY 464
           V  +     +  +  + ++++    L 
Sbjct: 412 VKTHWNPELVNTLHTITLSEIDEDGLV 438


>gi|326335995|ref|ZP_08202171.1| 2-methylthioadenine synthetase [Capnocytophaga sp. oral taxon 338
           str. F0234]
 gi|325691792|gb|EGD33755.1| 2-methylthioadenine synthetase [Capnocytophaga sp. oral taxon 338
           str. F0234]
          Length = 438

 Score =  350 bits (899), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 120/443 (27%), Positives = 216/443 (48%), Gaps = 21/443 (4%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + +R    + GC++N  ++  +   F ++G+++V+  + AD+ V+NTC + E A +    
Sbjct: 1   MKKRVAFYTLGCKLNFAETATIARSFENEGFDKVDFEEPADIYVINTCSVTENADK---- 56

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
              + + +    +K   +  +   GC AQ + E+++     V++V+G +  + + + ++ 
Sbjct: 57  ---QFKQIVRKALKHNENAFIAAIGCYAQLKPEDLIAVD-GVDLVLGAKEKFNITQYIDD 112

Query: 143 --ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
                  +V   D +  D +       G Y+      AFL IQ+GCD  CT+C +P  RG
Sbjct: 113 LTKLNKGQVHSCDINEADFYV------GSYSIGDRTRAFLKIQDGCDYKCTYCAIPMARG 166

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK---CTFSDLLYSLSEI 257
           I  S ++  ++  A+K+ +N + EI L G N+    GKG  G K    TF +L+ +L  +
Sbjct: 167 ISRSDTIENILKNAKKISENNIKEIVLTGVNIG-DYGKGEFGNKKHEHTFLELIQALDTV 225

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
           +G+ RLR ++  P  + D  I         +P+ H+P+QSGS+ ILK M RR+    Y+ 
Sbjct: 226 EGIERLRISSIEPNLLKDETIAFVAQSRSFVPHFHIPLQSGSNDILKKMKRRYLRELYQN 285

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
            + +I+   PD  I  D IVGFPGETD+ F  T   ++++  +    F YS R  T    
Sbjct: 286 RVAKIKEEMPDACIGVDVIVGFPGETDEHFLETYHFLNELDISYLHVFTYSERDNTEAVK 345

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQS 437
           M   V   ++A+R   L+    +++  F +  +G   +VL E   K+ G + G +     
Sbjct: 346 MEGVVPSEIRAKRSRMLRGLSAKKRHYFYEKQLGTTHKVLFESDNKD-GFMHGFTENYVK 404

Query: 438 VVLNSKNHNIGDIIKVRITDVKI 460
           V      + I  +  V +  +  
Sbjct: 405 VKTPWNPNLINTLQPVVLKKIDS 427


>gi|292670089|ref|ZP_06603515.1| tRNA-I(6)A37 thiotransferase [Selenomonas noxia ATCC 43541]
 gi|292648277|gb|EFF66249.1| tRNA-I(6)A37 thiotransferase [Selenomonas noxia ATCC 43541]
          Length = 472

 Score =  350 bits (899), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 141/446 (31%), Positives = 220/446 (49%), Gaps = 20/446 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R    + GC++N +++  ME +F ++GYE V   + A++ V+NTC +   +  K    + 
Sbjct: 39  RAAFMTLGCKVNQFETETMEGLFRARGYEIVPFEEAAEVYVINTCSVTHLSDRKSRQLIR 98

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R         +   D  + VAGC AQ   EEI   +  V VV+G +   ++ + +E A  
Sbjct: 99  RAA-------RTNPDACIAVAGCYAQVAPEEIRALA-GVRVVIGTKERAQIVDYVEAALQ 150

Query: 146 GKRVVD---TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
               V    TD      FE + +    +  +    AFL I++GC  FCTFC++PY RG  
Sbjct: 151 KNAGVIGAITDIMQARVFEDIPLRSMPHRTR----AFLKIEDGCQNFCTFCIIPYARGPV 206

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR LS V  E   L + G  E+ L G ++ A  G  L            +L E K L R
Sbjct: 207 KSRELSAVAREMHLLTEAGFHEVVLTGIHLGA-YGIDLAARPTLADACRTALGEAK-LRR 264

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LR  +    ++S  L++          +LHLP+Q+GSD +L++MNR +    + Q+I  +
Sbjct: 265 LRLGSLESVELSADLLELIRTEPRFAAHLHLPLQAGSDAVLRAMNRHYDTAAFAQLIADV 324

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R   P +A+S+D IVGFPGET++DF A MD V  +G+A+   F YSPR GTP +   +QV
Sbjct: 325 RRAVPGVAVSTDIIVGFPGETEEDFAAGMDFVRAMGFARMHVFPYSPRRGTPAAQRADQV 384

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
              V+ ER   +Q    E    ++ A +G + EVL E    E G   G +     V  ++
Sbjct: 385 PPAVRKERAARMQALAEELAQDYHRAALGSVTEVLFE--TAEDGVTNGLTETYIRVYTDA 442

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
                G ++ +R+  +    ++G  V
Sbjct: 443 PVAR-GALVPMRLVRLYRDGVWGTPV 467


>gi|291543604|emb|CBL16713.1| MiaB-like tRNA modifying enzyme [Ruminococcus sp. 18P13]
          Length = 440

 Score =  350 bits (899), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 123/448 (27%), Positives = 217/448 (48%), Gaps = 22/448 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
             +  S+GC++N Y++  +  M   +G + V   +DADLI++N+C +   +  KV   L 
Sbjct: 2   TAYYLSFGCKVNQYETNALRGMLSREGIQPVEQPEDADLILVNSCTVTASSDRKVRHALR 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +R+             +V+ GC+ QA  +   +  P  +++ G +    L + + +   
Sbjct: 62  SLRS-------RCPAAKIVLTGCLPQAHPDA-AQLCPEADLITGTKDRAALIQRIRQLME 113

Query: 146 GKRVVD--TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
                D  T Y+  + +E L   +          AF+ IQ+GC++FC++C++PY RG   
Sbjct: 114 SAVPWDGVTPYTPGEGYELLPPAEN----ADRTRAFIKIQDGCNQFCSYCIIPYARGRCR 169

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           S+    +  EA ++   G  E  L+G N+ A+ G    G+     D +     + G+ R+
Sbjct: 170 SKPREALAQEAAQMAQAGCREAVLIGINL-AFYGMEWQGD---LGDAVDICCAVPGIDRV 225

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R  +  P  +SD L++         P  HL +QSG DR L++MNR +T  EY  +  RIR
Sbjct: 226 RLGSLEPEKLSDDLLRRLAAHPQFCPQFHLSLQSGCDRTLRAMNRHYTTAEYADLAARIR 285

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
            + PD A+++D +VGFPGET+ DF  +++ V ++G+A+   F YSPR GT  + M EQ+ 
Sbjct: 286 RIFPDAALTTDVMVGFPGETEADFACSLEFVREMGFAKVHVFPYSPREGTVAARMPEQIP 345

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL--- 440
              K  R   + +     + +F  + VG+++ VL E+   +     G +P    V +   
Sbjct: 346 SPEKRRRAALMGETAAACRRAFLRSQVGKVMPVLFER-SADPAWHRGYTPNYTPVKISAK 404

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
             +      + +V I   +     G L+
Sbjct: 405 KGEKSLRKSVFRVIIKSSEPDCCIGTLL 432


>gi|260654222|ref|ZP_05859712.1| RNA modification enzyme, MiaB-family [Jonquetella anthropi E3_33
           E1]
 gi|260630855|gb|EEX49049.1| RNA modification enzyme, MiaB-family [Jonquetella anthropi E3_33
           E1]
          Length = 431

 Score =  350 bits (899), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 112/449 (24%), Positives = 193/449 (42%), Gaps = 30/449 (6%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +   + + GC  N  DS R+  +    G+   +  +  DLI+LNTC   + A E+  S +
Sbjct: 2   KTAHIVTLGCPKNEADSERLAGIMARAGFSLTDKSEGVDLILLNTCGFIQPAVEEGISTM 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             +  +K      G    + V GC+    G+++ +  P V+     + +  L E +    
Sbjct: 62  LDMETMKAR----GDVKALAVVGCMVNRYGDDLKKEFPTVDYWARSEQWQELIESMGATY 117

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G                          +   T +L I EGC+  C++C +P  RG   S
Sbjct: 118 LGD-------------------GRHILTRTPWTRYLKISEGCNCQCSYCAIPGIRGRLCS 158

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R + ++V EA +L+  G  E+ L+GQ +    G  L  ++     L      +   V LR
Sbjct: 159 RPIDELVQEAGRLVSEGAKELCLVGQELTE-YGADLYKKRSLPKLLTELEKTLPQSVWLR 217

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
               HP  +   L++       ++P+L +P+Q   +++L+ M R     + R +    R 
Sbjct: 218 LFYLHPSHLDTALLEQIASSKQIVPWLDVPIQHIDNQVLERMARPPVETKIRSLFKIARE 277

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           + PD A  +  +VGFPGET   F   +D V+ I + +  +F YSP  GT  ++  +Q+ E
Sbjct: 278 INPDFAFRTTLMVGFPGETRRQFDRLLDFVEDIQFDRLGAFTYSPEDGTKAASFPDQIPE 337

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQS-VV 439
           + K  R   L    +          VG+ ++VL+E+  ++  +  GRS    P +   V 
Sbjct: 338 DEKGRRYDELMSLQQSISRRRQALFVGRRLDVLVEEVDQDGTRW-GRSYRDAPEIDGAVA 396

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
           L+      GDI+   I D     L+G  V
Sbjct: 397 LSGSASQPGDIVSALIDDSSEYDLFGRPV 425


>gi|254173086|ref|ZP_04879760.1| MiaB-like tRNA modifying enzyme, archaeal-type [Thermococcus sp.
           AM4]
 gi|214033242|gb|EEB74070.1| MiaB-like tRNA modifying enzyme, archaeal-type [Thermococcus sp.
           AM4]
          Length = 424

 Score =  350 bits (899), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 125/445 (28%), Positives = 220/445 (49%), Gaps = 27/445 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R  V+SYGC  N  D   ME +    G+E V + ++AD +V+NTC +++    K+   + 
Sbjct: 3   RVHVESYGCSRNKADGEIMEALLLKAGHELVETPENADYVVVNTCAVKDPTEFKMAKRIR 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            + +             V+  GC+     + I    P V+ ++G ++  R+ E +E A  
Sbjct: 63  ELLD---------SGKKVIATGCLVHVNPDAI---DPRVSGILGVKSIDRIAEAIEIAER 110

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G ++V  +   E   ++L +       K GV   + I EGC   CT+C   + RG+  S 
Sbjct: 111 GGKLVSVEGWRERNPDKLELPRLW---KPGVAFVVPISEGCLNACTYCATRFARGVLKSY 167

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
               VV   ++ +  G  EI L  ++     G  +       ++LL  ++ I+G  R+R 
Sbjct: 168 KPELVVKWVKEALARGYREIILSSEDTG-CYGFDI---GTNLAELLDEITAIEGEFRVRV 223

Query: 266 TTSHPRD---MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
              +P       D LI+A+ D + +  +LHLPVQSG + IL+ M R +T  E+++I+   
Sbjct: 224 GMMNPNHVLKFLDELIEAYQD-EKVYRFLHLPVQSGDNEILRRMGRNYTVEEFKEIVRAF 282

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R   P++ +++D IVGFPGET++ FR T++LV +I   +    +YS R GT  +   +Q+
Sbjct: 283 RKKIPELNLNTDIIVGFPGETEEAFRNTVELVKRIKPDKINVSRYSARPGTIAARW-KQL 341

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
              +  ER   L +   +     N A VG+ +EVL+   GK+ G + GR+   + ++L+S
Sbjct: 342 PGWLVKERSRELHRLRLQIAYEINKAYVGRTVEVLVHGPGKKGG-VEGRAFNYKDIILDS 400

Query: 443 KNHNIGDIIKVRITDVKISTLYGEL 467
                G +++ ++     + L G +
Sbjct: 401 GEA--GSLVRAKVERATATYLIGRV 423


>gi|83592518|ref|YP_426270.1| MiaB-like tRNA modifying enzyme [Rhodospirillum rubrum ATCC 11170]
 gi|83575432|gb|ABC21983.1| MiaB-like tRNA modifying enzyme [Rhodospirillum rubrum ATCC 11170]
          Length = 441

 Score =  350 bits (898), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 136/465 (29%), Positives = 222/465 (47%), Gaps = 36/465 (7%)

Query: 10  VAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNT 69
           +A   +  +D    P    + ++GC++N Y+S  M +     G         +D I++NT
Sbjct: 6   LAPPTADAIDDNASPGGPRIVTFGCRLNTYESEVMREQAAKAGL--------SDAIIVNT 57

Query: 70  CHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG 129
           C +  +A  +    + R+R       +E  +  ++V GC AQ + +      P V+ V+G
Sbjct: 58  CAVTREAERQARQTIRRLR-------RENPETRLIVTGCGAQLDPKG-WGAMPEVDQVLG 109

Query: 130 PQTYYRLPEL------LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQ 183
            +   +          L+     K +VD   +V +    L +V G   R R   AF+ +Q
Sbjct: 110 NEEKLKAESYRPLAGGLDLGAPEKILVDDIMTVRET--ALHLVGGFEGRAR---AFVQVQ 164

Query: 184 EGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
           +GCD  CTFC++P+ RG   S  + ++VD+ R L+  G  E+ L G ++ A  G  L G 
Sbjct: 165 QGCDHRCTFCIIPFARGNSRSVPMGRIVDQIRALVAAGYREVVLTGVDITA-YGPDLPGA 223

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
                 +   L  +  L RLR ++  P ++ + L+        L+ +LHL VQ+G+D IL
Sbjct: 224 PSLGQMVRRLLRAVPDLPRLRLSSLDPVEVDEDLLALVASEPRLLAHLHLSVQAGADLIL 283

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           K M RRH   +   +  R+R++RP +A+ +D IVGFP ET++ F  ++ LV++ G     
Sbjct: 284 KRMKRRHLRDDVIALAQRLRTLRPGMALGADIIVGFPTETEEHFAQSLALVEEAGLTHLH 343

Query: 364 SFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK 423
            F YSPR GTP + M  QVD+ V  +R   L++       +     VG I  VLIE+ G+
Sbjct: 344 VFPYSPRPGTPAALMP-QVDKAVVKDRARRLREAGEAALAAHRAVLVGGIDHVLIERPGE 402

Query: 424 EKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
                 G       V ++      G I+ VR+   +   L GE V
Sbjct: 403 ------GHGETFVPVSVD-PALTPGSIVPVRLRAGEGGHLIGEAV 440


>gi|304437669|ref|ZP_07397621.1| MiaB family tRNA modification enzyme [Selenomonas sp. oral taxon
           149 str. 67H29BP]
 gi|304369302|gb|EFM22975.1| MiaB family tRNA modification enzyme [Selenomonas sp. oral taxon
           149 str. 67H29BP]
          Length = 429

 Score =  350 bits (898), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 138/443 (31%), Positives = 223/443 (50%), Gaps = 15/443 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R    + GC++N +++  ME +F ++GYE V   + AD+ V+NTC +   +  K    + 
Sbjct: 2   RAAFMTLGCKVNQFETETMEGLFRARGYEIVPFEERADVYVINTCSVTHLSDRKSRQIIR 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R   +            + VAGC AQ   EE+      V VV+G +   R+ + +E A  
Sbjct: 62  RAARM-------NPTACIAVAGCYAQVSPEEVRG-LEGVRVVIGTEERARIVDYVEEALR 113

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
              VV+    V        I   G   +    AFL I++GC  FC+FC++PY RG   SR
Sbjct: 114 ADGVVEEITDVMQARAFEDIPLHGVPHR--TRAFLKIEDGCQNFCSFCIIPYARGPVKSR 171

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            L+ V  E  KL   G  E+ L G ++ A  G  L  ++ T +D   +    K + RLR 
Sbjct: 172 PLAAVAREMEKLAAAGFREVVLTGIHLGA-YGIDLP-QRPTLADACRTALRTKEVRRLRL 229

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
            +    ++S+ L+          P+LHLP+Q+GSD +L++MNRR+    + Q++  +R  
Sbjct: 230 GSLESVELSEDLLSLVRTEPRFAPHLHLPLQAGSDNVLRAMNRRYDTAAFAQLLADVRRA 289

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P  AIS+D IVGFPGET++DF A +D V  +G+A+   F YS R GTP +   +Q+   
Sbjct: 290 VPGAAISTDIIVGFPGETEEDFTAGLDFVRAMGFARMHVFPYSARRGTPAARRTDQIAPP 349

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445
           V+ ER   +Q    E   +++ A +G + EVL E   ++ G   G +     V  ++   
Sbjct: 350 VRRERAARMQALAEEMAEAYHRAALGTVDEVLFE--TEQDGVADGLTGTYIRVYTDAAVP 407

Query: 446 NIGDIIKVRITDVKISTLYGELV 468
             G+++ +R+  +    ++GE V
Sbjct: 408 R-GELVPMRLVRLCRDGVWGERV 429


>gi|149731822|ref|XP_001494687.1| PREDICTED: CDK5 regulatory subunit associated protein 1-like 1
           [Equus caballus]
          Length = 578

 Score =  350 bits (898), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 120/464 (25%), Positives = 218/464 (46%), Gaps = 34/464 (7%)

Query: 15  SQIVDQCIVP-QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIR 73
           S   D  I   Q+ +++++GC  N  D   M     + GY+   +  DADL +LN+C ++
Sbjct: 52  SPPSDSTIPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVK 111

Query: 74  EKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTY 133
             A +   + + + +              +V+AGCV QA+  +   +      ++G Q  
Sbjct: 112 NPAEDHFRNSIKKAQEENKK---------IVLAGCVPQAQPRQDYLKG---LSIIGVQQI 159

Query: 134 YRLPELLERARFGKRVVDTDYSVED-KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTF 192
            R+ E++E    G  V       ++ K    + +D    RK  +   ++I  GC   CT+
Sbjct: 160 DRVVEVVEETIKGHSVRLLGQKKDNGKRLGGAPLDLPKIRKNPLIEIISINTGCLNACTY 219

Query: 193 CVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLY 252
           C   + RG   S  + ++VD A++    GVCEI L  ++  A  G+ +     +   LL+
Sbjct: 220 CKTKHARGNLASYPIDELVDRAKQSFQEGVCEIWLTSEDTGA-YGRDI---GTSLPALLW 275

Query: 253 SLSEIK--------GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304
            L E+         G+    Y   H  +M+  L     +   +  +LH+PVQS SD +L 
Sbjct: 276 KLVEVIPEGAMLRLGMTNPPYILEHLEEMAKIL-----NHPRVYAFLHIPVQSASDTVLM 330

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
            M R +   ++++++D ++   P I I++D I GFPGET++DF+ T+ LV++  +   F 
Sbjct: 331 EMKREYCVADFKRVVDFLKEKVPGITIATDIICGFPGETNEDFQETVKLVEEYKFPSLFI 390

Query: 365 FKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE 424
            ++ PR GTP + M EQV   VK +R   L +       +  D  VG+  +VL+ +   +
Sbjct: 391 NQFYPRPGTPAAKM-EQVPAQVKKQRTKDLSRVF--HSYNPYDHKVGERQQVLVTEESFD 447

Query: 425 KGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
               V  + + + V++      +G +++V I +     + G+ V
Sbjct: 448 SKFYVAHNRFYEQVLVPKNPTFMGKMVEVDIYESGKHFMKGQPV 491


>gi|298291698|ref|YP_003693637.1| MiaB-like tRNA modifying enzyme YliG [Starkeya novella DSM 506]
 gi|296928209|gb|ADH89018.1| MiaB-like tRNA modifying enzyme YliG [Starkeya novella DSM 506]
          Length = 452

 Score =  350 bits (898), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 133/455 (29%), Positives = 202/455 (44%), Gaps = 41/455 (9%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R    S GC   + DS R+     S+GYE     + ADL+++NTC   + A  +  + +G
Sbjct: 19  RISFVSLGCPKALVDSERIITSLRSEGYELSRRHEGADLVIVNTCGFLDSAKAESLAAIG 78

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
               LK +         V+V GC+  AE E I    P V  V GPQ Y  +   + +A  
Sbjct: 79  DA--LKENGK-------VIVTGCMG-AEPEHIRDVHPGVLAVTGPQQYESVLAAVHQA-- 126

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                       D F  L    G     R   A+L I EGC+  CTFC++P  RG  +SR
Sbjct: 127 -------VPPSHDPFVDLVPPQGIKLTPRHY-AYLKISEGCNNRCTFCIIPKLRGDLVSR 178

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE---------KCTFSDLLYSLSE 256
             + V+ EA +L+  GV E+ ++ Q+ +A  G  +            +  F DL   L  
Sbjct: 179 PAADVLREAERLVAAGVKELLVISQDTSA-YGIDVKYAASKWKDREVRARFLDLARELGT 237

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           +   VR+ Y   +P      +I    D  V++PYL +P Q  S  +LK M R     +  
Sbjct: 238 LGAWVRMHYVYPYPHVD--EVIGLMSD-GVILPYLDIPFQHASPTVLKRMKRPAAQEKTL 294

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
             I + R   PD+ + S FIVGFPGET+ +F   +D +D+    +   FKY P  G P +
Sbjct: 295 ARIQKWRQDCPDLTLRSTFIVGFPGETEAEFEELIDFLDEAELDRVGCFKYEPVAGAPAN 354

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS---- 432
           ++   + + VK ER     +  +          VG   +V+I+  G      VGRS    
Sbjct: 355 DLGAAIPDEVKEERWKRFMEVQQRVSARRLKRKVGTRQQVIIDSVG--PTVAVGRSKADA 412

Query: 433 PWLQS-VVLNS-KNHNIGDIIKVRITDVKISTLYG 465
           P +   V + S +   +G+I+ V+I       L+G
Sbjct: 413 PEIDGSVHVASRRPLRVGEIVTVKIERADAYDLHG 447


>gi|15606200|ref|NP_213577.1| hypothetical protein aq_849 [Aquifex aeolicus VF5]
 gi|6226402|sp|O67016|RIMO_AQUAE RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|2983397|gb|AAC06982.1| hypothetical protein aq_849 [Aquifex aeolicus VF5]
          Length = 432

 Score =  350 bits (898), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 127/450 (28%), Positives = 214/450 (47%), Gaps = 41/450 (9%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +  V S GC  N+ DS  +       G E   + ++AD+I++NTC   E A  +    + 
Sbjct: 2   KIGVVSLGCAKNLVDSEILLGKLKGAGVELTPNPEEADVIIVNTCGFIEPAKLESIETIL 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL--ERA 143
                            V+V GC+ +   EE+ +  P V    G +++  +   L  +  
Sbjct: 62  EFAE---------SGKEVIVMGCLVERYKEELEKEIPEVKAYFGTESWNEILNYLGLKEK 112

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           +  KR++ T  S                      A+L I EGC++ C+FC +P  RG   
Sbjct: 113 KEIKRILSTPRSY---------------------AYLKIAEGCNRLCSFCAIPKIRGRHR 151

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR + ++VDEA+ L D GV EI ++ Q+   + GK L  ++    +LL  L +++G+  +
Sbjct: 152 SRKIEEIVDEAKFLADQGVKEICVVSQDTT-YYGKDLY-KEYKLVELLEGLEKVEGIKWI 209

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R    +P ++ + LI    + + ++PY  +P+Q  SDR+LK M R +     R +I+ IR
Sbjct: 210 RLLYLYPTEVHEDLIDYVANSEKVLPYFDVPLQHVSDRVLKDMRRGYDGKFVRNLIENIR 269

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
               +    + FIVGFP E+++DF+     V++  +     F YSP  GT    + + + 
Sbjct: 270 KKIENAVFRTTFIVGFPTESEEDFKELKKFVEEGHFHWLGVFTYSPEEGTHAYPLGDPIP 329

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-----KGKLVGRSPWLQSV 438
             VK ER   L    R      N+  +G+ IEVLI+ + +E     KG+   ++P +  V
Sbjct: 330 REVKEERREELMAIQRGITRKKNEEFLGKEIEVLIDGYEEEFSFVPKGRAYFQAPEVDGV 389

Query: 439 VL--NSKNHNIGDIIKVRITDVKISTLYGE 466
           V   +S++   GDI+KV++T V    L G 
Sbjct: 390 VYVESSRDLKSGDILKVKVTQVADYDLAGR 419


>gi|306819660|ref|ZP_07453323.1| MiaB family RNA modification enzyme [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
 gi|304552305|gb|EFM40233.1| MiaB family RNA modification enzyme [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
          Length = 438

 Score =  350 bits (897), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 129/449 (28%), Positives = 228/449 (50%), Gaps = 20/449 (4%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + +++ ++S GC  N+ D+  M  +    GYE  + +DDAD+ ++NTC   E A E+   
Sbjct: 1   MIKKYVLESLGCSKNLVDAEEMVYILNENGYEMTDDIDDADVAIVNTCGFIESAKEESID 60

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +  I + K   +K      ++V GC+ Q   +++  + P ++  +G  +Y  +  +L+ 
Sbjct: 61  TILNIASHKQKNLKH-----LIVTGCLVQRYYKDLKEQIPEIDAFLGTTSYNTILNVLQG 115

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
              GK     D S+          +          A++ I EGCD  CT+C++P  RG  
Sbjct: 116 LSIGK-----DNSLILPANTKLDHNKKKILTDSYYAYIKIAEGCDNSCTYCIIPKLRGRY 170

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR + ++V+EA++L    V EI L+ Q+  +  G  + GEK    +LL  LS+I+G+  
Sbjct: 171 VSRPMEEIVEEAKRLASQNVKEIVLIAQDT-SKYGLDIYGEKK-LPNLLRELSKIEGIRW 228

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R+  ++P D++D L++   + D +  Y  +P+Q  S+RILK MNR     E    I+ I
Sbjct: 229 IRFLYTYPEDITDELVQEVKNNDKVCSYFDIPIQHASNRILKLMNRSTDRQEISDKINLI 288

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           RS   D  I +  I GFP E+ +D     D V ++ + +   F YS   GT   NM  Q+
Sbjct: 289 RSNIKDAIIRTTLITGFPTESQEDIDELADFVRQMKFDKLGVFPYSREEGTKAGNMDGQI 348

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSP----WLQSV 438
           +++VK +R   + +  +E     N++ VG+    ++++  ++   +V RS      + +V
Sbjct: 349 EQDVKNQRAEMIMRLQQEIVREKNESYVGRPFSTIVDEVYED--YVVARSYMDVIEVDTV 406

Query: 439 VLNSKN--HNIGDIIKVRITDVKISTLYG 465
           +  +    H  GD I+V+ITDV    L G
Sbjct: 407 IYVNTETTHEKGDFIEVKITDVLDYDLKG 435


>gi|325677621|ref|ZP_08157273.1| tRNA methylthiotransferase YqeV [Ruminococcus albus 8]
 gi|324110589|gb|EGC04753.1| tRNA methylthiotransferase YqeV [Ruminococcus albus 8]
          Length = 434

 Score =  350 bits (897), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 131/448 (29%), Positives = 233/448 (52%), Gaps = 20/448 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + +  ++GC++N Y++  + + F   G+E V     AD+ V+NTC + E+A  K    L 
Sbjct: 2   KIYYYTFGCKVNQYETEHIRERFTENGHETVRDFSVADVCVINTCTVTEQADSKCMQMLR 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER-AR 144
           R+R       K     ++V+AGC  QA        +   +++VG +    +PEL++   +
Sbjct: 62  RVR-------KAAPQSVIVLAGCFPQAFQSRAESLAEC-DIIVGTEGKGSIPELVDCFMK 113

Query: 145 FGKRVVDT-DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            G+R+V    ++  + F+R++             A++ IQ+GCD +CT+C++P+ RG   
Sbjct: 114 SGERIVAVKPHARGEAFDRMT----NKGDSDKTRAYIKIQDGCDCYCTYCIIPFARGHLR 169

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           S+ +  ++ EAR  +  G  E+ L G N+  + G+GL  E+ T +D++  +  I+G  R+
Sbjct: 170 SKPIGDILTEARDAVSTGHKELILTGINL-CFYGRGLS-EQLTLTDVVERICAIEGDFRV 227

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R  +  P  M +  I+    LD L P+ HL +QSGS   LK MNRR+T  EY ++   +R
Sbjct: 228 RLGSIEPEMMLEDDIRRLAALDKLCPHFHLSLQSGSASTLKLMNRRYTPAEYEKLCHDLR 287

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              PD AI++D +VGF  E + +F  ++   ++I +A+A  F YS R GT       QVD
Sbjct: 288 EYFPDCAITTDIMVGFSHEGEAEFAESLAFAERIAFAEAHIFPYSRRKGTKADTFDGQVD 347

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
            + K  R   + +  ++ +  +  +CVG+  +VL E+   E+    G +P   +V +   
Sbjct: 348 GHTKHLRAAKMAEVCKKTKAEYLASCVGKTFKVLFERES-EQDWHNGHAPNYVTVKVPRP 406

Query: 444 NHNIG---DIIKVRITDVKISTLYGELV 468
           + ++       +V+IT       +GEL+
Sbjct: 407 SPDVSLRRQFRQVKITSANEEHCFGELI 434


>gi|239994932|ref|ZP_04715456.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Alteromonas macleodii
           ATCC 27126]
          Length = 332

 Score =  350 bits (897), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 170/341 (49%), Positives = 237/341 (69%), Gaps = 10/341 (2%)

Query: 58  SMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEI 117
           S ++AD+I+LNTC IREKA EKV+  LGR + LK     +  +L++ V GCVA  EG+ I
Sbjct: 1   SAEEADVILLNTCSIREKAQEKVFHQLGRWKTLKQ----DKPELIIGVGGCVASQEGDTI 56

Query: 118 LRRSPIVNVVVGPQTYYRLPELLERARFG-KRVVDTDYSVEDKFERLSIVDGGYNRKRGV 176
            +R+P V++V GPQT +RLPE++ + + G K V+D  +   +KF+RL        R  G 
Sbjct: 57  RQRAPFVDLVFGPQTLHRLPEMINQLQGGAKSVIDVSFPEIEKFDRLP-----EPRAEGP 111

Query: 177 TAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR 236
           TAF++I EGC K+CTFCVVPYTRG E+SR +  V+ E  +L   GV E+ LLGQNVNA+R
Sbjct: 112 TAFVSIMEGCSKYCTFCVVPYTRGEEVSRPVDDVLLEIAQLAGQGVREVNLLGQNVNAYR 171

Query: 237 GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQ 296
           G+  DG  C FS+LL  ++ I G+ R+RYTTSHP + +D +I+A+  +  L+ +LHLPVQ
Sbjct: 172 GENYDGTICRFSELLELVAAIDGIDRIRYTTSHPVEFTDDIIEAYASIPELVDHLHLPVQ 231

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
           SGSDRIL  M R HTA EY+  + +++ +RP+I++SSDFI+GFPGETD DF ATMDL+  
Sbjct: 232 SGSDRILNLMKRGHTAIEYKSKMRKLKKIRPNISLSSDFIIGFPGETDADFEATMDLIQA 291

Query: 357 IGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKK 397
           + Y  +FSF YS R GTP ++ ++ V E  K +RL  LQ++
Sbjct: 292 VDYDLSFSFIYSARPGTPAADAVDDVSEETKKQRLHLLQQR 332


>gi|153953540|ref|YP_001394305.1| oxidoreductase [Clostridium kluyveri DSM 555]
 gi|146346421|gb|EDK32957.1| Predicted oxidoreductase [Clostridium kluyveri DSM 555]
          Length = 434

 Score =  350 bits (897), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 129/441 (29%), Positives = 232/441 (52%), Gaps = 17/441 (3%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  M + F  + YE VN  + AD+ V+NTC +     +K    + R +  
Sbjct: 3   TLGCRVNQYETEAMAEKFIEKEYELVNFEEYADVYVINTCTVTNMGDKKSRQMIHRAK-- 60

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA-RFGKRV 149
                ++    ++ V GC +Q   +E+  +   V+VV+G +    +   + +A +  +++
Sbjct: 61  -----RKNSSAVIAVVGCYSQIAPDEV-SKINGVDVVLGTKNKGDILHFVNKAFKDEEKI 114

Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209
           +   + +++K      +    NR R   AFL IQ+GC++FC++C++P+ RG   S+   +
Sbjct: 115 IKVSHVLKNKTFEDLNISEYQNRTR---AFLKIQDGCNRFCSYCLIPFARGPVCSKEPDK 171

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSH 269
           ++ E +KL  N   EI L G ++ A  G  + G       +L  + +IKG+ R+R  +  
Sbjct: 172 IIKEVKKLQVNNFKEIILSGIHI-ASYGVDISGS-WNLIKILEEIDKIKGIDRVRIGSID 229

Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329
           P+  ++ +I     L  L P+ HL +QSG D  L  MNR++T  EY +I+ ++R    D+
Sbjct: 230 PKFFTEDIINRMASLTKLCPHFHLSLQSGCDSTLNRMNRKYTTTEYEKIVYKLRDSIKDV 289

Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAE 389
           +I++D IVGFPGET+++F  T D ++KI  ++   FKYS R GT  ++M EQ+D  +K E
Sbjct: 290 SITTDIIVGFPGETEEEFYKTYDFLNKIELSKIHVFKYSRREGTKAADMKEQIDGKIKDE 349

Query: 390 RLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSPWLQSVVLNS--KNHN 446
           R   + K     +  F +  +G  ++VL E K   +K    G +P    V+  S    + 
Sbjct: 350 RSSKIIKLNERLENKFMNRFLGNNMDVLYEQKVSGDKIYYEGYTPNYIKVIAESAEGENL 409

Query: 447 IGDIIKVRITDVKISTLYGEL 467
            G ++  ++  VK   + G +
Sbjct: 410 EGKVLNTKLESVKEGYILGRI 430


>gi|126663485|ref|ZP_01734482.1| possible 2-methylthioadenine synthetase [Flavobacteria bacterium
           BAL38]
 gi|126624433|gb|EAZ95124.1| possible 2-methylthioadenine synthetase [Flavobacteria bacterium
           BAL38]
          Length = 447

 Score =  350 bits (897), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 122/440 (27%), Positives = 211/440 (47%), Gaps = 17/440 (3%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
            ++    + GC++N  ++  +   F ++G+ERV   + AD+ V+NTC + + A +     
Sbjct: 4   KKKVAFYTLGCKLNFSETSTIARDFQNEGFERVEFEEIADIYVINTCSVTDNADK----- 58

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
             + + +    +K      V   GC AQ + EE+      V++V+G    +++ + +   
Sbjct: 59  --QFKQIVKKAMKLNDKAFVAAVGCYAQLKPEELAAVD-GVDLVLGATEKFKITDYINDL 115

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
                  D       + E      G Y+      AFL +Q+GCD  CT+C +P  RGI  
Sbjct: 116 SKN----DMGEVHSCEIEEADFYVGSYSFGDRTRAFLKVQDGCDYKCTYCTIPLARGISR 171

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK---CTFSDLLYSLSEIKGL 260
           S ++  V+  A+++   G+ EI L G N+    GKG  G K    TF DL+  L +++G+
Sbjct: 172 SDTMEGVLKNAKEISAKGIKEIVLTGVNIG-DYGKGEFGNKKHEHTFLDLVTELDKVEGI 230

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            RLR ++  P  + +  I+        +P+ H+P+QSGS+ ILK M RR+    Y   ++
Sbjct: 231 ERLRISSIEPNLLKNETIELVSKSRAFVPHFHIPLQSGSNDILKKMKRRYLRELYVDRVN 290

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           +IR V P   I  D IVGFPGETD+ F  T   ++ +  +    F YS R  T  + M  
Sbjct: 291 KIREVMPHACIGVDVIVGFPGETDEHFLETYHFLNDLDISYLHVFTYSERDNTEAAEMEG 350

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440
            V  NV+++R   L+    +++ +F ++ +G    VL E   KE G + G +     V  
Sbjct: 351 VVPANVRSKRSKMLRGLSVKKRRAFYESQIGTKRTVLFENENKE-GYIHGFTENYVKVKT 409

Query: 441 NSKNHNIGDIIKVRITDVKI 460
                 +  + ++ +T +  
Sbjct: 410 PWNPELVNTLHEINLTKIDE 429


>gi|86142709|ref|ZP_01061148.1| hypothetical protein MED217_07336 [Leeuwenhoekiella blandensis
           MED217]
 gi|85830741|gb|EAQ49199.1| hypothetical protein MED217_07336 [Leeuwenhoekiella blandensis
           MED217]
          Length = 447

 Score =  350 bits (897), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 123/441 (27%), Positives = 210/441 (47%), Gaps = 17/441 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
             ++    + GC++N  ++  +   F ++G++RV+  D AD+ V+NTC + E A +    
Sbjct: 4   AGKKVAFYTLGCKLNFSETATISRSFENEGFDRVDFKDTADIYVINTCSVTENADK---- 59

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
              R + +     K   D  V   GC AQ + EE+      V++V+G    +++ + L  
Sbjct: 60  ---RFKTIVKQAQKVNPDAFVAAVGCYAQLKPEELADVD-GVDLVLGATEKFKITDYLND 115

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
                   D       + E      G Y+      AFL +Q+GCD  CT+C +P  RGI 
Sbjct: 116 LSKN----DMGEVHSCEIEDADFYVGSYSVGDRTRAFLKVQDGCDYKCTYCTIPLARGIS 171

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK---CTFSDLLYSLSEIKG 259
            S +L  V+  AR++   G+ EI L G N+    GKG  G K    TF DL+ +L +++G
Sbjct: 172 RSDTLQNVLKNAREISAQGIREIVLTGVNIG-DYGKGEFGNKKHEHTFLDLVKALDQVEG 230

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           + RLR ++  P  + +  I+        +P+ H+P+QSG++ +L  M RR+    Y   +
Sbjct: 231 IERLRISSIEPNLLKNETIEVVAASRAFVPHFHIPLQSGNNEMLGKMRRRYRRELYVDRV 290

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
             I+ + PD  I  D IVGFPGETD+ F  T + ++++  +    F YS R  T  ++M 
Sbjct: 291 AAIKKLMPDACIGVDVIVGFPGETDEHFLDTYNFLNELDISYLHVFTYSERDNTLAADMD 350

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV 439
             V    + +R   L+    +++ +F ++ +G    VL E   K+ G + G +     V 
Sbjct: 351 GAVPLKRRKKRSKMLRGLSAKKRRAFYESQLGTQRTVLFEGENKK-GYIHGFTENYVKVK 409

Query: 440 LNSKNHNIGDIIKVRITDVKI 460
                  I     + +TD+  
Sbjct: 410 TPWDPSLINTTHTIELTDIDE 430


>gi|325662160|ref|ZP_08150778.1| MiaB-like tRNA modifying enzyme [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|331085957|ref|ZP_08335040.1| MiaB-like tRNA modifying enzyme [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|325471609|gb|EGC74829.1| MiaB-like tRNA modifying enzyme [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|330406880|gb|EGG86385.1| MiaB-like tRNA modifying enzyme [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 438

 Score =  350 bits (897), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 122/437 (27%), Positives = 222/437 (50%), Gaps = 16/437 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++  + + GC++N Y++  M+++    GYE V   + AD+ ++NTC +   A  K    +
Sbjct: 2   KKAALHNLGCKVNAYETEAMQELLEQNGYEIVPFQEGADIYIINTCTVTNMADRKSRQMI 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R +       K   D +VV AGC  QA  E   +    +++V+G      L E+LE   
Sbjct: 62  HRAK-------KMNPDAIVVAAGCYVQA-QENSDKIDECIDIVIGNNKKQNLIEILEEYE 113

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGY----NRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
             ++  D  +  ++  +     +              A++ +Q+GC++FCT+C++PY RG
Sbjct: 114 QKRKEADGVFVQQEVIDINHTKEYEELHLTKTAEHTRAYIKVQDGCNQFCTYCIIPYMRG 173

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
              SR   +VV+E   L  NG  E+ L G ++++  G   + EK T   L+ ++  I+G+
Sbjct: 174 RVRSRRKEEVVEEVSALAANGYKEVVLTGIHLSS-YGVDFE-EKETLLSLIQAVHAIEGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R  +  PR +++    A   L  + P+ HL +QSG +  LK MNRR++A EY +   
Sbjct: 232 ERIRLGSLEPRIITEEFASALSALPKICPHFHLSLQSGCEETLKRMNRRYSAEEYFEKCM 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
            +R    + A+++D IVGFPGET+++F  +   V+K+ + +   FKYS R GT  + M  
Sbjct: 292 LLRKYFENPALTTDIIVGFPGETEEEFEESRAFVEKVNFYETHIFKYSKRQGTKAAVMPN 351

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG--KLVGRSPWLQSV 438
           QV E  K +R   L       + ++ +   G+  E+L+E+  ++ G    +G +     +
Sbjct: 352 QVPEPEKTKRSNTLLALDERNRKAYEEQFAGKETEILVEEQMEKDGKTYWIGHTKEYIRL 411

Query: 439 VLNSKNHNIGDIIKVRI 455
            + S  +  G +++V +
Sbjct: 412 AILSDENLSGRLLRVTV 428


>gi|26349829|dbj|BAC38554.1| unnamed protein product [Mus musculus]
 gi|148700457|gb|EDL32404.1| CDK5 regulatory subunit associated protein 1-like 1, isoform CRA_d
           [Mus musculus]
          Length = 520

 Score =  350 bits (897), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 114/456 (25%), Positives = 212/456 (46%), Gaps = 19/456 (4%)

Query: 16  QIVDQCIVP--QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIR 73
           +      +P  Q+ +++++GC  N  D   M     + GY+   +  DADL +LN+C ++
Sbjct: 52  RPPSDSTIPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVK 111

Query: 74  EKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTY 133
             A +   + + + +              VV+AGCV QA+  +   +      ++G Q  
Sbjct: 112 NPAEDHFRNSIKKAQEENKK---------VVLAGCVPQAQPRQDYLKG---LSIIGVQQI 159

Query: 134 YRLPELLERARFGKRVVDTDYSVED-KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTF 192
            R+ E++E    G  V       ++ K    + +D    RK  +   ++I  GC   CT+
Sbjct: 160 DRVVEVVEETIKGHSVRLLGQKKDNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTY 219

Query: 193 CVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLY 252
           C   + RG   S  + ++V+ A++    GVCEI L  ++  A  G+ +  +  T    L 
Sbjct: 220 CKTKHARGNLASYPIDELVERAKQSFQEGVCEIWLTSEDTGA-YGRDIGTDLPTLLWKLV 278

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
            +     ++RL  T           +    +   +  +LH+PVQS SD +L  M R +  
Sbjct: 279 EVIPEGAMLRLGMTNPPYILEHLEEMAKILNHPRVYAFLHIPVQSASDSVLMDMKREYCV 338

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
            ++++++D ++   P I I++D I GFPGETD DF+ T+ LV++  +   F  ++ PR G
Sbjct: 339 ADFKRVVDFLKEKVPGITIATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPG 398

Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS 432
           TP +   EQV  +VK +R   L +       +  D  +G+  +VL+ +   +    V  +
Sbjct: 399 TPAAK-AEQVPAHVKKQRTKDLSRVF--HSYNPYDHKIGERQQVLVTEESFDSKFYVAHN 455

Query: 433 PWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            + + V++      +G +++V I +     L G+ V
Sbjct: 456 RFYEQVLVPKNPAFMGKMVEVDIYESGKHFLKGQPV 491


>gi|149045301|gb|EDL98387.1| CDK5 regulatory subunit associated protein 1-like 1 (predicted),
           isoform CRA_d [Rattus norvegicus]
          Length = 520

 Score =  350 bits (897), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 116/457 (25%), Positives = 210/457 (45%), Gaps = 18/457 (3%)

Query: 14  VSQIVDQCIVP-QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHI 72
            S   D  I   Q+ +++++GC  N  D   M     + GY+   +  DADL +LN+C +
Sbjct: 51  PSPPSDSTIPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTV 110

Query: 73  REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT 132
           +  A +   + + +                VV+AGCV QA+  +   +      ++G Q 
Sbjct: 111 KNPAEDHFRNSIKKAHEENKK---------VVLAGCVPQAQPRQDYLKG---LSIIGVQQ 158

Query: 133 YYRLPELLERARFGKRVVDTDYSVED-KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCT 191
             R+ E++E    G  V       E  K    + +D    RK  +   ++I  GC   CT
Sbjct: 159 IDRVVEVVEETIKGHSVRLLGQKKESGKRLGGARLDLPKIRKNPLIEIISINTGCLNACT 218

Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLL 251
           +C   + RG   S  + ++V+ A++    GVCEI L  ++  A  G+ +  +  T    L
Sbjct: 219 YCKTKHARGNLASYPIDELVERAKQSFQEGVCEIWLTSEDTGA-YGRDIGTDLPTLLWKL 277

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
             +     ++RL  T           +    +   +  +LH+PVQS SD +L  M R + 
Sbjct: 278 VEVIPEGAMLRLGMTNPPYILEHLEEMAKILNHPRVYAFLHIPVQSASDSVLMDMKREYC 337

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
             ++++++D ++   P I I++D I GFPGETD DF+ T+ LV++  +   F  ++ PR 
Sbjct: 338 VADFKRVVDFLKEKVPGITIATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRP 397

Query: 372 GTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR 431
           GTP +   +QV  +VK +R   L +       +  D  +G+  +VL+ +   +    V  
Sbjct: 398 GTPAAK-AKQVPAHVKKQRTKDLSRVF--HSYNPYDHKIGERQQVLVTEESFDSKFYVAH 454

Query: 432 SPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           + + + V++      +G +++V I +     L G+ V
Sbjct: 455 NRFYEQVLVPKNPAFMGKMVEVDIYESGKHFLKGQPV 491


>gi|332992975|gb|AEF03030.1| MiaB-like tRNA modifying enzyme YliG [Alteromonas sp. SN2]
          Length = 480

 Score =  349 bits (896), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 128/454 (28%), Positives = 205/454 (45%), Gaps = 34/454 (7%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R    S GC  N+ DS R+     ++GY+ V + +DADL+++NTC   + A E+    +G
Sbjct: 38  RIGFVSLGCPKNLVDSERILTQLRTEGYDVVPTYNDADLVIVNTCGFIDAAVEESLDTIG 97

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
               LK +         V+V GC+   + +EI    P V  + GP  Y  + E +     
Sbjct: 98  EA--LKENGK-------VIVTGCLG-IKEDEIREVHPNVLAITGPHAYESVVEQVHEHL- 146

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                       + FE L + D G        A+L I EGC+  CTFC++P  RG  +SR
Sbjct: 147 -------PKPQHNPFEHL-VPDHGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGDLVSR 198

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNA------WRGKGLDGE--KCTFSDLLYSLSEI 257
            +  V+DEA++L   GV E+ ++ Q+ +A       R    DG   K     L   L E+
Sbjct: 199 PVGSVLDEAKRLKSAGVKELLVISQDTSAYGVDVKHRTGFWDGMPVKTHMQQLCEKLGEM 258

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
              VRL Y   +P       +    +   ++PYL +P Q  + RIL+ M R  +A    +
Sbjct: 259 GIWVRLHYVYPYPHVDDLIPLM---NEGKILPYLDIPFQHANKRILRLMKRPGSADRTLE 315

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
            + + R   P + I S FIVGFPGET+++F   +D + +    +  +F YSP  G   ++
Sbjct: 316 RVKKWREACPSLVIRSTFIVGFPGETEEEFEELLDFIREAQLDRVGAFAYSPVEGARAND 375

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPWL 435
           + + V E+VK ERL    +   E       A +G   +V+I+    E   G+    +P +
Sbjct: 376 LPDPVPEDVKQERLARFMEVQGEISAQRLQARIGNEYQVVIDSVDSEGAVGRTYADAPEV 435

Query: 436 QS-VVLNSK-NHNIGDIIKVRITDVKISTLYGEL 467
              V LN   +   G  +   +       ++  L
Sbjct: 436 DGLVHLNGVYDVKPGQRVWAEVIHANEHDVWAVL 469


>gi|114605652|ref|XP_001171194.1| PREDICTED: CDK5 regulatory subunit associated protein 1-like 1
           isoform 4 [Pan troglodytes]
          Length = 536

 Score =  349 bits (896), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 116/460 (25%), Positives = 211/460 (45%), Gaps = 18/460 (3%)

Query: 11  AHMVSQIVDQCIVP-QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNT 69
               S   D  I   Q+ +++++GC  N  D   M     + GY+   +  DADL +LN+
Sbjct: 49  EEENSPPSDSTIPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNS 108

Query: 70  CHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG 129
           C ++  A +   + + + +              +V+AGCV QA+  +   +      ++G
Sbjct: 109 CTVKNPAEDHFRNSIKKAQEENKK---------IVLAGCVPQAQPRQDYLKG---LSIIG 156

Query: 130 PQTYYRLPELLERARFGKRVVDTDYSVED-KFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
            Q   R+ E++E    G  V       ++ +    + +D    RK  +   ++I  GC  
Sbjct: 157 VQQIDRVVEVVEETIKGHSVRLLGQKKDNGRRLGGARLDLPKIRKNPLIEIISINTGCLN 216

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS 248
            CT+C   + RG   S  + ++VD A++    GVCEI L  ++  A  G+ +     T  
Sbjct: 217 ACTYCKTKHARGNLASYPIDELVDRAKQSFQEGVCEIWLTSEDTGA-YGRDIGTNLPTLL 275

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
             L  +     ++RL  T           +    +   +  +LH+PVQS SD +L  M R
Sbjct: 276 WKLVEVIPEGAMLRLGMTNPPYILEHLEEMAKILNHPRVYAFLHIPVQSASDSVLMEMKR 335

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
            +   ++++++D ++   P I I++D I GFPGETD DF+ T+ LV++  +   F  ++ 
Sbjct: 336 EYCVADFKRVVDFLKEKVPGITIATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFY 395

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL 428
           PR GTP + M EQV   VK +R   L +       S  D  +G+  +VL+ +   +    
Sbjct: 396 PRPGTPAAKM-EQVPAQVKKQRTKDLSRVF--HSYSPYDHKIGERQQVLVTEESFDSKFY 452

Query: 429 VGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           V  + + + V++      +G +++V I +     + G+ V
Sbjct: 453 VAHNQFYEQVLVPKNPAFMGKMVEVDIYESGKHFMKGQPV 492


>gi|319783553|ref|YP_004143029.1| MiaB-like tRNA modifying enzyme YliG [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317169441|gb|ADV12979.1| MiaB-like tRNA modifying enzyme YliG [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 437

 Score =  349 bits (896), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 136/456 (29%), Positives = 211/456 (46%), Gaps = 36/456 (7%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R    S GC   + DS R+     ++GYE     D ADL+V+NTC   + A ++  + +G
Sbjct: 5   RVSFVSLGCPKALVDSERIITRLRAEGYEIARKHDGADLVVVNTCGFLDSARDESLNAIG 64

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                         +  V+V GC+  AE + I  + P V  + GPQ Y  +   +  A  
Sbjct: 65  SA---------LSENGRVIVTGCLG-AEPDVIREKHPNVLAITGPQAYESVMAAVHEAAP 114

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                  D           +   G        A+L I EGC+  CTFC++P  RG  +SR
Sbjct: 115 PSHDPYIDL----------LPPQGVKLTPRHYAYLKISEGCNNRCTFCIIPALRGDLVSR 164

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAW-----RGKGLDGEK---CTFSDLLYSLSEI 257
             + V+ EA KL   GV E+ ++ Q+ +A+         + G++     F DL   L ++
Sbjct: 165 PAADVLREAEKLAKAGVKELLVISQDTSAYGIDIKYQTSMFGDREVRAKFLDLSEELGKL 224

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
              VR+ Y   +P       + A G    ++PYL +P Q  S ++LK+M R     +  +
Sbjct: 225 GIWVRMHYVYPYPHVADVIPLMAEG---KILPYLDIPFQHASPQVLKNMRRPAHGEKTLE 281

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
            I   R V PD+AI S FIVGFPGETDDDF   +D +D+    +A  FKY P  G   ++
Sbjct: 282 RIRGWREVCPDLAIRSTFIVGFPGETDDDFEMLLDWLDEAKIDRAGCFKYEPVRGARSND 341

Query: 378 M-LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKH--GKEKGKLVGRSPW 434
           + LEQV + +K  R     ++ ++   +     VG+ + VLI++      KG+    +P 
Sbjct: 342 LGLEQVPQEIKEARWHRFMQRQQKISATQLARKVGKRLPVLIDEAHGTSAKGRTKYDAPE 401

Query: 435 LQS-VVLNSKNHNI-GDIIKVRITDVKISTLYGELV 468
           +   V + S+     GDI+ V+I       LYG  V
Sbjct: 402 IDGSVHIQSRRPLRQGDIVTVKIDRADAYDLYGSAV 437


>gi|255532825|ref|YP_003093197.1| MiaB-like tRNA modifying enzyme [Pedobacter heparinus DSM 2366]
 gi|255345809|gb|ACU05135.1| MiaB-like tRNA modifying enzyme [Pedobacter heparinus DSM 2366]
          Length = 439

 Score =  349 bits (896), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 121/443 (27%), Positives = 218/443 (49%), Gaps = 16/443 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++    + GC++N  ++  +  +F   GY  V+  D AD+ V+NTC + E A +K    +
Sbjct: 2   KKVAFYTLGCKLNFSETSTIGRLFTDAGYAVVDFTDGADVYVINTCSVTEHADKKCRKVV 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
                     +K      V + GC AQ +  EI      V++V+G    +R+ E +    
Sbjct: 62  KEA-------LKYAPHAYVTIVGCYAQLKPAEIA-EIEGVDMVLGAAEKFRIVEFISDLT 113

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
              + V    ++E             +R R    FL +Q+GCD  CT+C +P  RG   S
Sbjct: 114 KQPKAVVHQQNIEKVNHNFIAAYSIGDRTR---TFLKVQDGCDYPCTYCTIPLARGGSRS 170

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
            ++  V++ AR++ ++GV EI L G N+  + G      +  F DL+ +L E++G+ R+R
Sbjct: 171 DTIENVINRARQIAESGVKEIVLTGVNLGDF-GIRNGEREDKFFDLVKALDEVEGIERIR 229

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
            ++  P  +S+ +++        +P+ H+P+QSGS++IL  M RR+    Y + + +I++
Sbjct: 230 ISSIEPNLLSNEIVEFVATSKRFVPHFHIPLQSGSNKILGLMRRRYQRELYTERVAKIKA 289

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           V P+  I  D IVGFPGET +DF  T   ++++  +    F YS R  T  + M  +V  
Sbjct: 290 VMPNCCIGVDVIVGFPGETQEDFLDTYQFLNELDISYLHVFTYSEREQTAAAEMKGRVAG 349

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
           + +AER   L     +++ +F  + +G + EVL E   ++ G + G +     V      
Sbjct: 350 STRAERSKMLHILSDKKRRAFYQSQIGTVGEVLFE-DDQKNGFMHGFTKNYVKVKAKYDP 408

Query: 445 HNIGDIIKVRITDVKISTLYGEL 467
             + +I  V++ ++      GE+
Sbjct: 409 VMVNEIKTVKLVELTAD---GEV 428


>gi|325955310|ref|YP_004238970.1| MiaB-like tRNA modifying enzyme [Weeksella virosa DSM 16922]
 gi|323437928|gb|ADX68392.1| MiaB-like tRNA modifying enzyme [Weeksella virosa DSM 16922]
          Length = 444

 Score =  349 bits (896), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 119/434 (27%), Positives = 206/434 (47%), Gaps = 17/434 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +     + GC++N  ++  +       GY++V     A + V+NTC +   A ++  + +
Sbjct: 6   RTVAFYTLGCKLNFSETSTIARNLQDNGYQKVEFHQPASVYVINTCSVTANADKECRTIV 65

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
                   + +K   +  VVV GC AQ + EEI      V++V+G    + + + L+   
Sbjct: 66  -------KNALKANPNGFVVVVGCYAQLKPEEIAS-IEGVDLVLGASEKFNIAQYLDDLE 117

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
                +     +++         G Y+      AFL +Q+GCD  CT+C +P  RGI  S
Sbjct: 118 KQDETIIHSCEIDEA----DFYVGSYSIGDRTRAFLKVQDGCDYKCTYCTIPLARGISRS 173

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK---CTFSDLLYSLSEIKGLV 261
             L  V+  AR++ +  + EI L G N+    GKG  G K    TF +L+ +L E+  + 
Sbjct: 174 DELHNVLKNAREIANQDIKEIVLTGVNIG-DYGKGEFGNKKHEHTFLELVEALDEVDNIE 232

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R ++  P  + +  I         +P+ H+P+QSGSD +LK M RR+    Y+  ++ 
Sbjct: 233 RIRISSIEPNLLKNETISFVAQSKRFVPHFHIPLQSGSDVLLKKMKRRYLTALYKDRVES 292

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           IR + P+  I  D IVGFPGET++ F  T   +  +  +    F YS R  T   +    
Sbjct: 293 IRKIMPNACIGVDVIVGFPGETEELFMETYHFLQALPISYLHVFTYSERDNTEAIDFPGV 352

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           V  +V+ ER   L+    +++++F  + +G   +VL E   K  GK+ G +     V  +
Sbjct: 353 VPYHVRKERNKRLRILSEKKRLAFYQSQLGSTQKVLWEHENK-NGKMYGFTENYVKVEAD 411

Query: 442 SKNHNIGDIIKVRI 455
            +  +I  I +V +
Sbjct: 412 YQEESINQIQEVEL 425


>gi|320355317|ref|YP_004196656.1| MiaB-like tRNA modifying enzyme [Desulfobulbus propionicus DSM
           2032]
 gi|320123819|gb|ADW19365.1| MiaB-like tRNA modifying enzyme [Desulfobulbus propionicus DSM
           2032]
          Length = 444

 Score =  349 bits (896), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 128/437 (29%), Positives = 213/437 (48%), Gaps = 14/437 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +R  + + GC++N ++S      F ++G   V    +AD+ V+NTC +  KA ++    +
Sbjct: 2   KRIAITTLGCKVNQFESAAFASGFEARGCTLVPFQAEADVYVINTCTVTAKAGQQSRQLI 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R+       + E     VVV GC AQ + E +   +     +VG    +    LL  A 
Sbjct: 62  RRV-------LHEHPGARVVVTGCYAQMDPEAVFSLADQPVAIVGNGNKH----LLVEAA 110

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRG-VTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             +   D    +    E+  I D    R RG   A+L IQ+GCD FC++C+VPYTRG   
Sbjct: 111 LAESSPDLVLLMGRIREKKEICDLPVTRFRGRTRAYLRIQDGCDNFCSYCIVPYTRGRSR 170

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           S  L++++ +    +D G  E+ + G NV    G  LD  +  +S L     +  GL RL
Sbjct: 171 SLPLTKILAQTAVFVDQGYRELVITGINVG-KYGLDLDEGETIYSLLARLCRDFPGL-RL 228

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R ++  P +++D L+         MP+LH+P+QSG D++L  MNRR+T  E+  +I+R+ 
Sbjct: 229 RLSSIEPTEVNDQLLDLMSGSPNFMPHLHIPLQSGDDQVLARMNRRYTRAEFAAVIERVH 288

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              P   I  D + GFPGET+ +   T  L+  +       F YS R GT  +++ +Q+ 
Sbjct: 289 QALPLATIGCDVLGGFPGETEAEADNTYRLLTDLPVHYLHVFPYSRRPGTLAASLPQQLP 348

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
             VK  R+  L+     ++ +   A  G+  +VL+E+   + G L G S     ++    
Sbjct: 349 GPVKEARVQRLRGLDAAKRQAAYQANCGRTHQVLVERRQAKTGLLQGFSENYVPILFAGG 408

Query: 444 NHNIGDIIKVRITDVKI 460
           +  I  ++ VR+  V+ 
Sbjct: 409 SGLIRQVVPVRLVAVED 425


>gi|291614491|ref|YP_003524648.1| MiaB-like tRNA modifying enzyme YliG [Sideroxydans lithotrophicus
           ES-1]
 gi|291584603|gb|ADE12261.1| MiaB-like tRNA modifying enzyme YliG [Sideroxydans lithotrophicus
           ES-1]
          Length = 441

 Score =  349 bits (896), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 129/463 (27%), Positives = 215/463 (46%), Gaps = 35/463 (7%)

Query: 17  IVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA 76
           +      PQ  FV S GC     DS  +     ++GY    S +DADL+V+NTC   + A
Sbjct: 1   MTSSKTAPQIGFV-SLGCPKATVDSEHILTRMRAEGYIITPSYEDADLVVVNTCGFIDSA 59

Query: 77  AEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL 136
             +    +G                 V+V GC+  A+G+ +++  P V  V GP     +
Sbjct: 60  VAESLEAIGEALQENGK---------VIVTGCLG-AKGDIVMQTHPKVLAVTGPHETDAV 109

Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
              + +             + D +  L +   G        A+L I EGC+  CTFC++P
Sbjct: 110 MNAVHQHLP---------RLHDPYVDL-VPPQGVRLTPQHFAYLKISEGCNHRCTFCIIP 159

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-----RGKGLDGEKCT---FS 248
             RG  +SR +  V+ EA KL+++GV E+ ++ Q+ +A+        G  G K      +
Sbjct: 160 SLRGDLVSRPVGDVMLEAEKLVESGVRELLVISQDTSAYGVDVKYRTGFWGGKPLKTRMT 219

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
           DL  +L  +   VRL Y   +P       + A G    ++PYL +P Q  ++RILK M R
Sbjct: 220 DLAEALGSLGVWVRLHYVYPYPSVDDVIPLMAEG---KILPYLDIPFQHANERILKLMKR 276

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
             ++    + I + RS+ PDI + S FIVGFPGET+++F   +D +++    +  +FKYS
Sbjct: 277 PASSENVLKRIQQWRSICPDIVLRSTFIVGFPGETEEEFEELLDFIEEAQLDRVGAFKYS 336

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-- 426
           P  G   + + + VD + + +RL  L     E         VGQ + VL++    +    
Sbjct: 337 PVEGAASNELPDHVDPDEQEDRLARLMYLQEEISAGKLAKKVGQTMTVLVDDVDDDGSVA 396

Query: 427 KLVGRSPWLQS-VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           +    +P +   V ++ +   +G+ + V+I D     L+ E+V
Sbjct: 397 RSAADAPEIDGLVYIDDEQLEVGEFVTVKIIDSDEHDLWAEVV 439


>gi|228472998|ref|ZP_04057755.1| conserved hypothetical protein [Capnocytophaga gingivalis ATCC
           33624]
 gi|228275580|gb|EEK14357.1| conserved hypothetical protein [Capnocytophaga gingivalis ATCC
           33624]
          Length = 438

 Score =  349 bits (895), Expect = 7e-94,   Method: Composition-based stats.
 Identities = 120/443 (27%), Positives = 216/443 (48%), Gaps = 21/443 (4%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + +R    + GC++N  ++  +   F ++G+++V+  + AD+ V+NTC + E A ++   
Sbjct: 1   MKKRVAFYTLGCKLNFAETATIARSFENEGFDKVDFEEPADIYVINTCSVTENADKQFRQ 60

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            + +        +K   +  +   GC AQ + E+++     V++V+G +  + + + ++ 
Sbjct: 61  IVRKA-------LKHNENAFIAAVGCYAQLKPEDLIAVD-GVDLVLGAKEKFNITQYIDD 112

Query: 143 --ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
                  ++   D +  D +       G Y+      AFL IQ+GCD  CT+C +P  RG
Sbjct: 113 LTKLNKGQIHSCDINEADFYV------GSYSIGDRTRAFLKIQDGCDYKCTYCTIPMARG 166

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK---CTFSDLLYSLSEI 257
           I  S ++  ++  A+K+ +N + EI L G N+    GKG  G K    TF +L+ +L  +
Sbjct: 167 ISRSDTIENILQNAKKISENNIKEIVLTGVNIG-DYGKGEFGNKKHEHTFLELIQALDTV 225

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
           +G+ RLR ++  P  + D  I         +P+ H+P+QSGS+ ILK M RR+    Y  
Sbjct: 226 EGIERLRISSIEPNLLKDETIAFVAQSRSFVPHFHIPLQSGSNDILKKMKRRYLRELYED 285

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
            + +IR + PD  I  D IVGFPGETD+ F  T   ++++  +    F YS R  T    
Sbjct: 286 RVAKIRELMPDACIGVDVIVGFPGETDEHFLETYHFLNQLDISYLHVFTYSERANTEAVE 345

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQS 437
           M   V   V+A+R   L+    +++  F +  +G   +V+ E   K+ G + G +     
Sbjct: 346 MEGVVPSEVRAKRSRMLRGLSAKKRHHFYEQQLGSTHQVIFESDNKD-GFMHGFTENYVK 404

Query: 438 VVLNSKNHNIGDIIKVRITDVKI 460
           V        +  + KV +  +  
Sbjct: 405 VKTPFAPELVNTLQKVVLKKIDP 427


>gi|330807856|ref|YP_004352318.1| tRNA modifying protein [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327375964|gb|AEA67314.1| Conserved hypothetical protein; putative tRNA modifying protein
           [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
          Length = 446

 Score =  349 bits (895), Expect = 7e-94,   Method: Composition-based stats.
 Identities = 129/464 (27%), Positives = 215/464 (46%), Gaps = 34/464 (7%)

Query: 18  VDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA 77
                   +    S GC   + DS R+      +GY+ V++  DAD++V+NTC   + A 
Sbjct: 3   TTTAPANPKVGFVSLGCPKALVDSERILTQLRMEGYDVVSTYQDADVVVVNTCGFIDSAK 62

Query: 78  EKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLP 137
            +    +G         IKE G   V+V GC+   EG  I    P V  V GPQ Y ++ 
Sbjct: 63  AESLEVIGEA-------IKENG--KVIVTGCMGVEEGN-IRNVHPSVLSVTGPQQYEQVV 112

Query: 138 ELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197
             +      ++  +    +        +   G        A+L I EGC+  C+FC++P 
Sbjct: 113 NAVHDVVPPRQDHNPLIDL--------VPPQGIKLTPRHYAYLKISEGCNHSCSFCIIPS 164

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSD 249
            RG  +SR +  V+DEA++L+  GV E+ ++ Q+ +A+      R    +G   K   ++
Sbjct: 165 MRGKLVSRPVGDVLDEAQRLVKAGVKELLVISQDTSAYGVDVKYRTGFWNGAPVKTRMTE 224

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
           L  +LS +   VRL Y   +P       + A G    ++PYL +P Q  S ++LK+M R 
Sbjct: 225 LCEALSTLGVWVRLHYVYPYPHVDELIPLMAAG---KILPYLDIPFQHASPKVLKAMKRP 281

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369
               +    I   R + PD+ I S FIVGFPGET++DF+  +D + +    +   F+YSP
Sbjct: 282 AFEDKTLARIKNWREICPDLIIRSTFIVGFPGETEEDFQYLLDWLTEAQLDRVGCFQYSP 341

Query: 370 RLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--G 426
             G P +   L+ V ++VK +R        +    +     +G+ IEVL+++  ++   G
Sbjct: 342 VEGAPANDLDLDVVPDDVKQDRWERFMAHQQAISSARLQMRIGREIEVLVDEVDEQGAVG 401

Query: 427 KLVGRSPWLQSVVL--NSKNHNIGDIIKVRITDVKISTLYGELV 468
           +    +P +   V   N  N   GD +  ++TD     L+ E +
Sbjct: 402 RCFFDAPEIDGNVFIDNGSNLKPGDKVWCKVTDADEYDLWAEQI 445


>gi|83953520|ref|ZP_00962242.1| RNA modification enzyme, MiaB-family protein [Sulfitobacter sp.
           NAS-14.1]
 gi|83842488|gb|EAP81656.1| RNA modification enzyme, MiaB-family protein [Sulfitobacter sp.
           NAS-14.1]
          Length = 456

 Score =  349 bits (895), Expect = 7e-94,   Method: Composition-based stats.
 Identities = 119/465 (25%), Positives = 204/465 (43%), Gaps = 35/465 (7%)

Query: 15  SQIVDQCIVPQ-RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIR 73
           +QI +     Q    + S GC   + DS R+     ++GY        AD +++NTC   
Sbjct: 16  AQITNPSRPGQPTIGMVSLGCPKALVDSERILTRLRAEGYGVSPDYAGADAVIVNTCGFL 75

Query: 74  EKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTY 133
           + A  +    +G              +  V+V GC+  AE + I    P +  V GP  Y
Sbjct: 76  DSAKAESLDAIGEA---------LNENGKVIVTGCLG-AEPDYIREHHPRILAVTGPHQY 125

Query: 134 YRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC 193
            ++ + +  A              D F  L          R   ++L I EGC+  C FC
Sbjct: 126 EQVLDAVHGA---------VPPSPDPFIDLLPAQAVSLTPRHY-SYLKISEGCNHKCKFC 175

Query: 194 VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-----GEKCTFS 248
           ++P  RG   SR    ++ EA KL+ NGV E+ ++ Q+ +A  G  +      G +   +
Sbjct: 176 IIPDMRGRLQSRPAHAILREAEKLVQNGVNELLVISQDTSA-YGVDIKHAEDRGHRAHIT 234

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
           DL   L  +   VRL Y   +P   +   + A G   +++PYL +P Q     +LK M R
Sbjct: 235 DLARDLGSLGAWVRLHYVYPYPHVRNLIPLMAEG---LVLPYLDIPFQHAHPDVLKRMAR 291

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
              A +    I   R   PDI + S FIVG+PGET+ +F+  +D +D+    +   F+Y 
Sbjct: 292 PAAAAKTLDEIAAWRDTCPDITLRSTFIVGYPGETEAEFQTLLDWLDEAQLDRVGCFQYE 351

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-- 426
              G   + + + V + VK +R     +K +    +  +A VG+ ++V+I++   E    
Sbjct: 352 NVDGARSNALPDHVPDEVKQDRWNRFMEKAQAISAAKLEAKVGRRMDVIIDEIDDEAATC 411

Query: 427 KLVGRSPWLQSVVLNS---KNHNIGDIIKVRITDVKISTLYGELV 468
           +    +P +   +      +N ++G I+ V + +     L+G +V
Sbjct: 412 RTKADAPEIDGNLFIDEGFENLSVGQIVTVEVEEAGEYDLWGRVV 456


>gi|187779001|ref|ZP_02995474.1| hypothetical protein CLOSPO_02596 [Clostridium sporogenes ATCC
           15579]
 gi|187772626|gb|EDU36428.1| hypothetical protein CLOSPO_02596 [Clostridium sporogenes ATCC
           15579]
          Length = 445

 Score =  349 bits (895), Expect = 7e-94,   Method: Composition-based stats.
 Identities = 131/449 (29%), Positives = 215/449 (47%), Gaps = 21/449 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +  + S GC  N  DS  M      +  E V    +A  I++NTC   E A E+  + + 
Sbjct: 5   KVALVSLGCDKNRIDSELMLYKLNEE-AELVKDPKEAQAIIVNTCGFIETAKEESINTIL 63

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE-RAR 144
           ++ + K    K     ++VV GC+ Q    E+    P +++++G   Y +L E ++   +
Sbjct: 64  QMASYK----KTHNCKVLVVTGCLTQRYKGELKDLIPEMDIMLGVNDYDKLLESIKIFLK 119

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G++     YS     E   I+          TA++ I EGC+ FCT+C +P  RG   S
Sbjct: 120 SGEKSFYYKYSDIKINEGNRIL-----TTPTYTAYVRIAEGCNNFCTYCAIPRIRGKYRS 174

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           RS   ++ E   L   GV EI L+ Q+     G  + G+K    +LL  +S+++G+  +R
Sbjct: 175 RSKENILKEVENLAKQGVKEIILIAQDTTM-YGIDIYGKKV-LHELLRDISKVEGVKWIR 232

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
               +P +++  LIK   + D +  YL LP+Q  S+ +LK M R+ T      II  +R 
Sbjct: 233 LLYCYPEEITKELIKEIKNNDKVCKYLDLPIQQISNSVLKRMGRKTTKETIINIIKELRK 292

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
               I + +  IVGFPGET+++F    + V  I   +   FKYS   GT  + M +Q++E
Sbjct: 293 EIEGITLRTSLIVGFPGETEEEFSELKEFVSDIKLDKLGVFKYSKEEGTSAALMEDQIEE 352

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVVL 440
            VK +R   +    ++     N   +G+I EV++E    ++    GR    SP +   + 
Sbjct: 353 EVKEKREEEIMILQQKISKDINKEKIGKIYEVIVEGT--KENMYSGRNYEMSPEIDGEIY 410

Query: 441 --NSKNHNIGDIIKVRITDVKISTLYGEL 467
               +N  IGDIIKV++T      L G +
Sbjct: 411 FEKDENVKIGDIIKVKVTHSLEYDLIGVV 439


>gi|88705942|ref|ZP_01103650.1| Fe-S oxidoreductase [Congregibacter litoralis KT71]
 gi|88699656|gb|EAQ96767.1| Fe-S oxidoreductase [Congregibacter litoralis KT71]
          Length = 466

 Score =  348 bits (894), Expect = 8e-94,   Method: Composition-based stats.
 Identities = 127/451 (28%), Positives = 194/451 (43%), Gaps = 33/451 (7%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
               S GC   + DS R+       GY  V S  DA+L+V+NTC   + A E+  + +G 
Sbjct: 34  VGFVSLGCPKALVDSERILSQLKLDGYNIVGSYTDAELVVVNTCGFIDSAKEESLAAIGE 93

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQ-AEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                        +  V+V GC+ + A+ E I    P V  V GP  Y  +   +     
Sbjct: 94  A---------IAENGRVIVTGCMGKGADAERIRAEHPKVLSVTGPAAYEEVVSAVHDY-- 142

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                      +D F  L I            A+L I EGC+  C+FC++P  RG  +SR
Sbjct: 143 -----VPAPPPKDAFTDL-IPASTVRLTPRHYAYLKISEGCNHRCSFCIIPSMRGDLVSR 196

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGEK--CTFSDLLYSLSEI 257
            +  V+DEA  L+ +GV E+ ++ Q+ +A+      R     G         L  +L E+
Sbjct: 197 PIGDVMDEAEALVRSGVRELLVISQDTSAYGVDLKYRTGFWQGRPLSTRMESLCKALGEL 256

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
              VRL Y   +P       + A G    ++PYL +P Q  S  +LK M R     +   
Sbjct: 257 GVWVRLHYVYPYPHVDKIIPLMAEG---KILPYLDIPFQHASHAVLKRMRRPAATEKVLH 313

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
            I   RS  PDI + S FIVGFPGETD +F   +D +D+    +   FKYSP  G   + 
Sbjct: 314 RIHNWRSQCPDITLRSTFIVGFPGETDAEFEELLDFLDEAQLDRVGCFKYSPVTGAAANE 373

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPWL 435
           + + V E +K ER      + +          VG+ IEVLI+    +   G+    +P +
Sbjct: 374 LADHVPEALKEERYERFMLRQQAISARRLQEKVGREIEVLIDNVDADGAVGRSSADAPEI 433

Query: 436 QS-VVLNS-KNHNIGDIIKVRITDVKISTLY 464
              V +    +   GD ++  ++      L+
Sbjct: 434 DGRVHIPGASDLTPGDWVRGTVSHADEYDLW 464


>gi|307609481|emb|CBW98976.1| hypothetical protein LPW_07611 [Legionella pneumophila 130b]
          Length = 435

 Score =  348 bits (894), Expect = 8e-94,   Method: Composition-based stats.
 Identities = 127/461 (27%), Positives = 208/461 (45%), Gaps = 41/461 (8%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           +  +    S GC   + DS R+     +QGYE V + +DA ++V+NTC   + A ++   
Sbjct: 1   MNHKVGFVSLGCPKALVDSERIITQLKAQGYELVPTYEDAGVVVINTCGFIDSAVQESLD 60

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +      K +  + G    V+V GC+  A+ + I    P V  + G   Y  +   + +
Sbjct: 61  TI------KEAMAENGR---VIVTGCLG-AKADVIKNACPDVLHISGAHAYEEVVNAVHQ 110

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
                          D F +L I   G        A+L I EGC++ CTFC++P  RG  
Sbjct: 111 HLP---------PPADPFTQL-IPPQGIKLTPRHYAYLKISEGCNQKCTFCIIPTMRGKL 160

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK---------CTFSDLLYS 253
            S  ++Q++ EA+KL   GV E+ ++ Q+ +A  G     +            F DL   
Sbjct: 161 QSYPMAQILTEAKKLKQAGVKELLVISQDTSA-YGVDTRYQPVEWQGKTVNTRFYDLCEQ 219

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
           L E+   VRL Y   +P       +       +++PYL +P+Q  + RILK+M R  ++ 
Sbjct: 220 LGELGIWVRLHYVYPYPHVDDIVPLM---RDGLILPYLDIPLQHANSRILKAMKRPASSE 276

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
                I   R + PDI + S FIVGFPGET+++F   +  + +    +   FKYSP  G 
Sbjct: 277 NTLLRIASWREICPDITLRSTFIVGFPGETEEEFSELLAFLKEAQLDRVGCFKYSPVEGA 336

Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS- 432
             +++   V E++K ER     +   E   +     +G    VLI++  ++  +++ RS 
Sbjct: 337 KANDLDNPVSEDIKEERYHRFMQVQAEISRNKLKNKIGSTQTVLIDEITED--QIIARSK 394

Query: 433 ---PWLQSVVLNSK--NHNIGDIIKVRITDVKISTLYGELV 468
              P +  +V   K     +G   +V ITD     LY  LV
Sbjct: 395 SDAPEIDGLVYLPKISGITVGSFAEVVITDSDDYDLYASLV 435


>gi|225012682|ref|ZP_03703117.1| MiaB-like tRNA modifying enzyme YliG [Flavobacteria bacterium
           MS024-2A]
 gi|225003215|gb|EEG41190.1| MiaB-like tRNA modifying enzyme YliG [Flavobacteria bacterium
           MS024-2A]
          Length = 433

 Score =  348 bits (894), Expect = 8e-94,   Method: Composition-based stats.
 Identities = 118/459 (25%), Positives = 214/459 (46%), Gaps = 33/459 (7%)

Query: 17  IVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA 76
           +  +     +  V + GC  NVYDS  +     +   E V+  ++ +++V+NTC   + A
Sbjct: 1   MRTKSTQKNKINVITLGCSKNVYDSEVLMGQLRANDQEVVH-QEEGNIVVINTCGFIDNA 59

Query: 77  AEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL 136
            E+  + +      K +    G    V V GC+++    ++ +  P V+   G       
Sbjct: 60  KEESVNTILEQIENKEA----GKVDKVYVTGCLSERYKPDLQKEIPQVDEYFGTTDL--- 112

Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
           P+LL       +V+  DY  E   ER+      +       A+L + EGCD+ C+FC +P
Sbjct: 113 PQLL-------KVLGADYKHELVGERILTTPKHF-------AYLKVSEGCDRPCSFCAIP 158

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256
             RG   S  + +VV +A+ L  +GV E+ L+ Q++  + G  L  E+     LL     
Sbjct: 159 IMRGKHRSTPIEEVVIQAQNLARDGVKELMLIAQDLT-YYGLDLYKERKLADLLLAL-VA 216

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           ++G+  +R   + P    + ++K   +   +  YL +P+Q  +D ILKSM R  T  +  
Sbjct: 217 VEGIEWIRLHYAFPTGFPEDVLKVMREQPKVCNYLDIPLQHIADPILKSMRRGTTKEKTT 276

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
            ++ + R   P I + +  IVG+PGET++DF    + V ++ + +   F YS    T   
Sbjct: 277 ILLKKFRKEVPGIILRTSLIVGYPGETEEDFETLKEWVKEMRFERLGCFTYSHEENTHAH 336

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS---- 432
            + + V E +K ER   + +   +     N +CVG+    LI++  KE    VGR+    
Sbjct: 337 QLEDNVPEEIKQERSNAIMEIQSQISWEHNQSCVGKTYRCLIDR--KEGVHYVGRTFMDS 394

Query: 433 PWLQS-VVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468
           P + + V++++  H +  G+ + + IT+     L G  +
Sbjct: 395 PDVDNEVLVDATAHYVKQGEFVNLLITEATDYDLVGVPI 433


>gi|149280491|ref|ZP_01886609.1| possible 2-methylthioadenine synthetase [Pedobacter sp. BAL39]
 gi|149228735|gb|EDM34136.1| possible 2-methylthioadenine synthetase [Pedobacter sp. BAL39]
          Length = 439

 Score =  348 bits (894), Expect = 8e-94,   Method: Composition-based stats.
 Identities = 119/432 (27%), Positives = 210/432 (48%), Gaps = 13/432 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++    + GC++N  ++  +  +F   GY  V+  D AD+ V+NTC + E A +K    +
Sbjct: 2   KKVAFYTLGCKLNFSETSTIGRLFTDAGYAVVDFTDAADVYVINTCSVTEHADKKCRKVV 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
                     +K   +  V + GC AQ +  EI      V++V+G    +R+ E +    
Sbjct: 62  KEA-------LKYSPNAYVTIVGCYAQLKPAEIA-EIEGVDMVLGAAEKFRIVEYISDLT 113

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
              + V    ++E             +R R    FL +Q+GCD  CT+C +P  RG   S
Sbjct: 114 KAPKAVIHQQNIEKVNHNFIAAYSIGDRTR---TFLKVQDGCDYPCTYCTIPLARGGSRS 170

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
            ++  V++ AR++  +GV EI L G N+  + G      +  F DL+ +L E++G+ R+R
Sbjct: 171 DTIENVINRARQIAGSGVKEIVLTGVNLGDF-GIRNGEREDKFFDLVKALDEVEGIERIR 229

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
            ++  P  +S+ +I         +P+ H+P+QSGS++IL  M RR+    Y + ++ I++
Sbjct: 230 ISSIEPNLLSNEIINFVASSKRFVPHFHIPLQSGSNKILGLMRRRYQRELYTERVETIKA 289

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           + P+  I  D IVGFPGET +DF  T   ++ +  +    F YS R  TP + M   V  
Sbjct: 290 LIPNCCIGVDVIVGFPGETQEDFLDTYQFLNGLDISYLHVFTYSEREQTPAAEMKGSVPG 349

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
           + +AER   L     +++ +F  + +  + EVL E   ++ G + G +     V      
Sbjct: 350 SSRAERSKMLHILSDKKRRAFYQSQIDTVGEVLFE-DDQKDGFMHGFTKNYVKVKAKYDP 408

Query: 445 HNIGDIIKVRIT 456
             + +I  V++ 
Sbjct: 409 VMVNEIKTVKLV 420


>gi|296282867|ref|ZP_06860865.1| ribosomal protein S12 methylthiotransferase [Citromicrobium
           bathyomarinum JL354]
          Length = 461

 Score =  348 bits (894), Expect = 9e-94,   Method: Composition-based stats.
 Identities = 116/478 (24%), Positives = 206/478 (43%), Gaps = 47/478 (9%)

Query: 14  VSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIR 73
           ++        P++  + S GC   + DS R+     + GY        AD++++NTC   
Sbjct: 1   MTTTTTSIPDPKKVGMVSLGCPKALVDSERILTRLRADGYAMSADYAGADIVLVNTCGFL 60

Query: 74  EKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTY 133
           + A E+    +G              +  V+V GC+ + E + I    P V  V G   Y
Sbjct: 61  DSAKEESLQAIGEA---------IAENGRVIVTGCMGE-EADAIRAAHPQVLAVTGAHQY 110

Query: 134 YRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC 193
            ++ E +       +    D   +     + +    Y       ++L I EGC+  C FC
Sbjct: 111 EQVVEAVHEHAPPSQGPYIDLIPQPDLADIKLTPRHY-------SYLKISEGCNHSCAFC 163

Query: 194 VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE---------K 244
           ++P  RG   SR +  V+ EA KL+  G  E+ ++ Q+ +A  G     +         +
Sbjct: 164 IIPDLRGKLASRRIDAVLREAEKLVAAGTKELLVISQDTSA-YGVDTRHDAREWKGREVR 222

Query: 245 CTFSDLLYSLSEI------KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
              +DL   L ++         VRL Y   +P       + A G   +L PYL +P Q  
Sbjct: 223 AHMTDLARELGQLRTDQGRPPWVRLHYVYPYPHVDQVIPLMAEG---LLTPYLDIPFQHA 279

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           +  +LK M R     +  + +   R + PDIA+ S F+VGFPGET++DF+  +D +++  
Sbjct: 280 APSVLKRMKRPANEAKVLERLKGWREICPDIAVRSSFVVGFPGETEEDFQYLLDWLEEAQ 339

Query: 359 YAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI 418
             +  +F++ P  G   + + + V E VK ER   + +       +   A +G+ + V+I
Sbjct: 340 LDRVGAFRFEPVEGAAANALPDPVPEAVKEERYARIMEATARISAAKLQAKIGRTLPVII 399

Query: 419 EKHGKEK--------GKLVGRSPWLQSVVL---NSKNHNIGDIIKVRITDVKISTLYG 465
           ++ G+          G+    +P +   V     S +   GDI++V++ D     L+G
Sbjct: 400 DEVGEPDEDGDIGATGRSQADAPEIDGNVFLRNVSASLAPGDIVEVQVEDADEHDLFG 457


>gi|39997663|ref|NP_953614.1| MiaB-like tRNA modifying enzyme [Geobacter sulfurreducens PCA]
 gi|39984555|gb|AAR35941.1| MiaB-like tRNA modifying enzyme [Geobacter sulfurreducens PCA]
 gi|298506603|gb|ADI85326.1| MiaB-like tRNA-modifying enzyme [Geobacter sulfurreducens KN400]
          Length = 434

 Score =  348 bits (894), Expect = 9e-94,   Method: Composition-based stats.
 Identities = 134/442 (30%), Positives = 221/442 (50%), Gaps = 18/442 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           QR  + + GC++N ++S  M +    +G+  V   D+AD+ V+NTC +  +   +    +
Sbjct: 2   QRVAITTLGCKINQFESAAMTESLGREGFRLVPFEDEADIYVINTCTVTARTDAESRRLI 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
                     ++      VVV GC AQ   + +    P V++VVG      +  LL  A 
Sbjct: 62  -------RRAMRRNPAARVVVTGCYAQVAPDAV-GELPGVSLVVGNSEKKGIAGLLRDAV 113

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
             ++++ +D S +   E L    G  +      AFL +Q GCD FC++C+VP+ RG   S
Sbjct: 114 PAEKILVSDISRQRTVEAL----GLESFAEHTRAFLQVQNGCDAFCSYCIVPHARGRSRS 169

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
                V++        G  E+ L G ++ A  G  L+    +  DLL +      + RLR
Sbjct: 170 VPFRDVLEGIGTFAYQGFREVVLTGIHLGA-YGADLEP-PASLLDLLEAADAEALVPRLR 227

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
             +  P ++SD LI       V+ P+LH+P+QSGSD +L+ MNRR+TA  +R+ ++R+ +
Sbjct: 228 VGSVEPHEISDGLIALMARSPVICPHLHIPLQSGSDSVLERMNRRYTAAFFRERVERLAA 287

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             PDI I  D I GFPGETD++F AT+ L++ +  A    F +S R GTP + M  QVD 
Sbjct: 288 AVPDICIGCDVIAGFPGETDEEFAATLALLEGLPIAHLHVFPFSRREGTPAARMPGQVDG 347

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS-K 443
            +  ER   L+     ++ +F+   +G+ + VL+        ++ G S    +V + +  
Sbjct: 348 KIVRERAEVLRALSDRKRETFHRRFMGRDLPVLV--LNGRGKEVTGLSRNYITVRIEAVT 405

Query: 444 NHNIGDIIKVRITDVKISTLYG 465
               G+ + VRIT V+   + G
Sbjct: 406 PPPEGE-VMVRITGVEADGVRG 426


>gi|332228849|ref|XP_003263603.1| PREDICTED: CDK5 regulatory subunit-associated protein 1-like 1
           [Nomascus leucogenys]
          Length = 536

 Score =  348 bits (894), Expect = 9e-94,   Method: Composition-based stats.
 Identities = 116/460 (25%), Positives = 211/460 (45%), Gaps = 18/460 (3%)

Query: 11  AHMVSQIVDQCIVP-QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNT 69
               S   D  I   Q+ +++++GC  N  D   M     + GY+   +  DADL +LN+
Sbjct: 49  EEENSPPSDSTIPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNS 108

Query: 70  CHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG 129
           C ++  A +   + + + +              +V+AGCV QA+  +   +      ++G
Sbjct: 109 CTVKNPAEDHFRNSIKKAQEENKK---------IVLAGCVPQAQPRQDYLKG---LSIIG 156

Query: 130 PQTYYRLPELLERARFGKRVVDTDYSVED-KFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
            Q   R+ E++E    G  V       ++ +    + +D    RK  +   ++I  GC  
Sbjct: 157 VQQIDRVVEVVEETIKGHSVRLLGQKKDNGRRLGGARLDLPKIRKNPLIEIISINTGCLN 216

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS 248
            CT+C   + RG   S  + ++VD A++    GVCEI L  ++  A  G+ +     T  
Sbjct: 217 ACTYCKTKHARGNLASYPIDELVDRAKQSFQEGVCEIWLTSEDTGA-YGRDIGTNLPTLL 275

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
             L  +     ++RL  T           +    +   +  +LH+PVQS SD +L  M R
Sbjct: 276 WKLVEVIPEGAMLRLGMTNPPYILEHLEEMAKILNHPRVYAFLHIPVQSASDSVLMEMKR 335

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
            +   ++++++D ++   P I I++D I GFPGETD DF+ T+ LV++  +   F  ++ 
Sbjct: 336 EYCVADFKRVVDFLKEKVPGITIATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFY 395

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL 428
           PR GTP + M EQV   VK +R   L +       S  D  +G+  +VL+ +   +    
Sbjct: 396 PRPGTPAAKM-EQVPAQVKKQRTKDLSRVF--HSYSPYDHKIGERQQVLVTEESFDSKFY 452

Query: 429 VGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           V  + + + V++      +G +++V I +     + G+ V
Sbjct: 453 VAHNQFYEQVLVPKNPAFMGKMVEVDIHESGKHFMKGQPV 492


>gi|311259791|ref|XP_003128247.1| PREDICTED: CDK5 regulatory subunit-associated protein 1-like 1-like
           [Sus scrofa]
          Length = 578

 Score =  348 bits (893), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 120/464 (25%), Positives = 217/464 (46%), Gaps = 34/464 (7%)

Query: 15  SQIVDQCIVP-QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIR 73
           S   D  I   Q+ +++++GC  N  D   M     + GY+   +  DADL +LN+C ++
Sbjct: 52  SPPSDSTIPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVK 111

Query: 74  EKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTY 133
             A +   + + + +              +V+AGCV QA+  +   +      ++G Q  
Sbjct: 112 NPAEDHFRNSIKKAQEENKK---------IVLAGCVPQAQPRQDYLKG---LSIIGVQQI 159

Query: 134 YRLPELLERARFGKRVVDTDYSVED-KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTF 192
            R+ E++E    G  V       ++ K    + +D    RK  +   ++I  GC   CT+
Sbjct: 160 DRVVEVVEETIKGHSVRLLGQKKDNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTY 219

Query: 193 CVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLY 252
           C   + RG   S  + ++VD A++    GVCEI L  ++  A  G+ +     +   LL+
Sbjct: 220 CKTKHARGNLASYPIDELVDRAKQSFQEGVCEIWLTSEDTGA-YGRDI---GTSLPALLW 275

Query: 253 SLSEIK--------GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304
            L E+         G+    Y   H  +M+  L     +   +  +LH+PVQS SD +L 
Sbjct: 276 KLVEVIPEGAMLRLGMTNPPYILEHLEEMAKIL-----NHPRVYAFLHIPVQSASDTVLM 330

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
            M R +   ++++++D ++   P I I++D I GFPGETD DF+ T+ LV++  +   F 
Sbjct: 331 DMKREYCVADFKRVVDFLKDKVPGITIATDIICGFPGETDQDFQETVKLVEEYKFPSLFI 390

Query: 365 FKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE 424
            ++ PR GTP + M EQV   VK +R   L +       +  D  +G+  +VL+ +   +
Sbjct: 391 NQFYPRPGTPAAKM-EQVPAQVKKQRTKDLSRVF--HSYNPYDHKIGERQQVLVTEESFD 447

Query: 425 KGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
               V  + + + V++      +G +++V I +     + G+ V
Sbjct: 448 SKFYVAHNRFYEQVLVPKNPTFMGKMVEVDIYESGKHFMKGQPV 491


>gi|239833929|ref|ZP_04682257.1| MiaB-like tRNA modifying enzyme YliG [Ochrobactrum intermedium LMG
           3301]
 gi|239821992|gb|EEQ93561.1| MiaB-like tRNA modifying enzyme YliG [Ochrobactrum intermedium LMG
           3301]
          Length = 456

 Score =  348 bits (893), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 136/454 (29%), Positives = 212/454 (46%), Gaps = 38/454 (8%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R    S GC   + DS R+     S+GYE     D ADL+++NTC   + A ++    +G
Sbjct: 24  RVSFVSLGCPKALVDSERIITSLRSEGYEISRKHDGADLVIVNTCGFLDSARDESLDAIG 83

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                         +  V+V GC+  AE E I +R P V  + GPQ Y  +   +  A  
Sbjct: 84  LA---------LNENGKVIVTGCLG-AEPEVIRQRHPNVLAITGPQAYESVMSAVHEAAP 133

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                       D F  L +   G        A+L I EGC   C+FC++P  RG  +SR
Sbjct: 134 ---------PAHDPFVDL-VPPQGVKLTPRHYAYLKISEGCSNRCSFCIIPALRGDLVSR 183

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE---------KCTFSDLLYSLSE 256
            + QV+ EA KL++ GV EI ++ Q+ +A  G  +  +         +  F DL   L E
Sbjct: 184 PIDQVLREAEKLVNAGVKEILVISQDTSA-YGLDIKYQEAMWQDRTVRTKFLDLSRELGE 242

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           +   VR+ Y   +P       + A G    ++PYL +P Q  S  +LK+M R     +  
Sbjct: 243 MGVWVRMHYVYPYPHVDEVIPLMAEG---KILPYLDIPFQHASPAVLKNMRRPAHQEKTS 299

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
           + I   R   PD+A+ S FIVG+PGET++DF+  +D +D+    +A  FKY P  G   +
Sbjct: 300 RRIQAWRETCPDLAVRSTFIVGYPGETEEDFQMLLDWLDEAKIERAGCFKYEPVKGAKAN 359

Query: 377 NM-LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK--EKGKLVGRSP 433
           ++ LEQV E +K  R      K ++   +     VG+ + V+I++      KG+    +P
Sbjct: 360 DLGLEQVPEEIKEARWHRFMAKQQQISTNLLKKKVGKRLPVIIDESNGTVAKGRTRYDAP 419

Query: 434 WLQS-VVLNS-KNHNIGDIIKVRITDVKISTLYG 465
            +   V + S +   +GDI+ V+I       L+G
Sbjct: 420 EIDGSVHIQSRRPLRVGDIVTVKIEASDAYDLHG 453


>gi|319951674|ref|YP_004162941.1| miab-like tRNA modifying enzyme [Cellulophaga algicola DSM 14237]
 gi|319420334|gb|ADV47443.1| MiaB-like tRNA modifying enzyme [Cellulophaga algicola DSM 14237]
          Length = 442

 Score =  348 bits (893), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 126/445 (28%), Positives = 214/445 (48%), Gaps = 17/445 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + ++    + GC++N  ++  +   F  +G++RV+  + AD+ V+NTC + E A +    
Sbjct: 1   MKKKVAFYTLGCKLNFSETSTIARNFQEEGFDRVDFSEHADMYVINTCSVTENADK---- 56

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
              R +++     K   D  V   GC AQ + E++      V++V+G    +++ + +  
Sbjct: 57  ---RFKSIVKQAQKVNPDAFVAAIGCYAQLKPEDLASVH-GVDLVLGATEKFKITDYIND 112

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
                   D       +        G Y       AFL +Q+GCD  CT+C +P  RGI 
Sbjct: 113 LSKN----DFGEVHSCEIVEADFYVGSYAIGDRTRAFLKVQDGCDYKCTYCTIPLARGIS 168

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK---CTFSDLLYSLSEIKG 259
            S +L  V+  A+++    + EI L G N+    GKG  G K    TF DL+ +L  I+G
Sbjct: 169 RSDTLQNVIKNAKEIASQDIKEIVLTGVNIG-DYGKGEFGNKKHEHTFYDLVEALDAIEG 227

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           + RLR ++  P  + +  I    D +  +P+ H+P+QSGSD ILK M RR+ +  Y   +
Sbjct: 228 IHRLRISSIEPNLLKNKTIDFVADSNSFVPHFHIPLQSGSDEILKLMRRRYLSGLYVDRV 287

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            RI+ V P   I  D IVGFPGETD+ F  T   ++ +  +    F YS R  T  + M 
Sbjct: 288 TRIKEVMPHACIGVDVIVGFPGETDELFLETYHFLNDLDISYLHVFTYSERDNTVAAEMD 347

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV 439
             V +NV+++R   L+    +++ +F ++ +G +  VL E   KE G + G +     V 
Sbjct: 348 NVVSKNVRSKRSKMLRGLSAKKRRAFYESQIGSVRTVLFEGENKE-GYIHGFTENYVKVK 406

Query: 440 LNSKNHNIGDIIKVRITDVKISTLY 464
                  +  + +V + ++    L 
Sbjct: 407 APWNPELVNQLKQVELVNIDEDGLV 431


>gi|126322223|ref|XP_001375874.1| PREDICTED: similar to CDK5 regulatory subunit associated protein
           1-like 1 [Monodelphis domestica]
          Length = 595

 Score =  348 bits (893), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 112/460 (24%), Positives = 211/460 (45%), Gaps = 19/460 (4%)

Query: 12  HMVSQIVDQCIVP--QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNT 69
                      +P  Q+ +++++GC  N  D   M     + GY+   +  +ADL +LN+
Sbjct: 48  QEEDDPPSDSTIPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENPSEADLWLLNS 107

Query: 70  CHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG 129
           C ++  A +   + + + +           D  VV+AGCV QA+  +   +      ++G
Sbjct: 108 CTVKNPAEDHFRNSIKKAQE---------EDKKVVLAGCVPQAQPRQDYLKG---LSIIG 155

Query: 130 PQTYYRLPELLERARFGKRVVDTDYSVED-KFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
            Q   R+ E++E    G  V        + K    + +D    RK  +   ++I  GC  
Sbjct: 156 VQQIDRVVEVVEETIKGHSVRLLGQKKSNGKRLGGARLDLPKIRKNPLIEIISINTGCLN 215

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS 248
            CT+C   + RG   S  + ++VD A++    GVCEI L  ++  A  G+ +  +  T  
Sbjct: 216 ACTYCKTKHARGNLASYPIDELVDRAKQSFQEGVCEIWLTSEDTGA-YGRDIGTDLPTLL 274

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
             L  +     ++RL  T           +    +   +  +LH+PVQS SD +L  M R
Sbjct: 275 WKLVEVIPEGAMLRLGMTNPPYILEHLEEMAKILNHPRVYAFLHIPVQSASDSVLMEMKR 334

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
            +   ++++++D ++   P + I++D I GFPGETD DF+ T+ LV+   +   F  ++ 
Sbjct: 335 EYCVADFKRVVDFLKEKVPGLTIATDIICGFPGETDQDFQDTLKLVEDYKFPSLFINQFY 394

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL 428
           PR GTP + + +QV  +VK +R   L +       +  D  +G+  +VL+ +   +    
Sbjct: 395 PRPGTPAAKI-QQVPAHVKKQRTKDLSQLF--HSYNPYDHKIGERQQVLVTEESFDSKFY 451

Query: 429 VGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           V  + + + V++      +G +++V I +     + G+ V
Sbjct: 452 VAHNQFYEQVLVPKNPMFMGKMVEVDIYESGKHFMKGQPV 491


>gi|291539696|emb|CBL12807.1| MiaB-like tRNA modifying enzyme [Roseburia intestinalis XB6B4]
          Length = 435

 Score =  348 bits (893), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 124/439 (28%), Positives = 215/439 (48%), Gaps = 23/439 (5%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++  + + GC++N Y++  M+ +  + GYE V   + AD+ V+NTC +   A  K     
Sbjct: 2   KKAALHNLGCKVNAYETEAMQQILENAGYEIVPFTEIADVYVINTCSVTNMADRKSRQMF 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R +       K   D +VV AGC  Q   E        +++V+G    + L  LL    
Sbjct: 62  HRAK-------KMNPDAIVVGAGCYVQT-KEAQALVDESIDIVIGNNQKHELVTLLNEYE 113

Query: 145 FGK----RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
                  ++VD ++  ++  E                AF+ +Q+GC++FC++C++P+ RG
Sbjct: 114 KEHTKQAQIVDINHEKQEYEELHL-----KKTAEHTRAFIKVQDGCNQFCSYCIIPFARG 168

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
              SR +  V++E  +L  +G  E+ L G +++++   G+D  +   S L+  + EI+G+
Sbjct: 169 RVRSRKMEDVLNEINELAKSGYKEVVLTGIHLSSY---GVDTGETLLS-LIEHVHEIEGI 224

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R  +  PR +++   K   +L  + P+ HL +QSG D +LK MNRR+   EY    D
Sbjct: 225 ERIRLGSLEPRIVTEDFAKRLSELTKICPHFHLSLQSGCDSVLKRMNRRYDTAEYEAGCD 284

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
            +R      AI++D IVGFPGET+++F+ T + + KI + +   FKYS R GT  + M +
Sbjct: 285 LLRKYFTHPAITTDVIVGFPGETEEEFKITEEYLKKIHFYEMHIFKYSVREGTKAAVMPD 344

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG--KLVGRSPWLQSV 438
           QV E  K ER   L    ++    F +  VG+    L+E+     G     G +     V
Sbjct: 345 QVSEQKKTERSNILLSLEKKMSEEFRNYYVGKEKTALLEEELVVDGKTYFTGYTKEYVKV 404

Query: 439 VLNSKNHNIGDIIKVRITD 457
              ++ +     +  +I  
Sbjct: 405 AFETEENMTNQFVTGKIKG 423


>gi|218261905|ref|ZP_03476578.1| hypothetical protein PRABACTJOHN_02249 [Parabacteroides johnsonii
           DSM 18315]
 gi|218223699|gb|EEC96349.1| hypothetical protein PRABACTJOHN_02249 [Parabacteroides johnsonii
           DSM 18315]
          Length = 431

 Score =  348 bits (893), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 113/456 (24%), Positives = 206/456 (45%), Gaps = 34/456 (7%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDD--ADLIVLNTCHIREKAAEK 79
           +   +  + + GC  N+ DS ++   F + GY   +       +++V+NTC     A E+
Sbjct: 1   MRKNKVDIITLGCSKNLVDSEQLMRQFVANGYTVEHDPHKINGEIVVVNTCGFIGDAQEE 60

Query: 80  VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL 139
             + +  +   K    K+G    + V GC+++   +++    P V+   G   +  L   
Sbjct: 61  SINMILDLGEAK----KKGKIGKLFVMGCLSERFLKDLENELPEVDRFYGKFNWKELLND 116

Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           L +           Y  E   +R+      Y       A+L I EGCD+ C++C +P + 
Sbjct: 117 LGK----------SYHRELAADRVLTTPRHY-------AYLKIAEGCDRTCSYCAIPIST 159

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G   S  + ++  E R L+  GV E  ++ Q++  + G  L  ++    +L+  +S+I G
Sbjct: 160 GRYQSIPMEEIEKEVRLLVKQGVKEFQVIAQDLT-YYGLDLY-KRHALPELVERISDIPG 217

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           +  +R    +P      L++   + D +  Y+ + +Q  SD +LK M R  T  E   +I
Sbjct: 218 VEWIRLHYGYPSHFPYDLLRVMRERDNVCKYMDIALQHISDPMLKKMRRNITKEETYALI 277

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            R+R   P I + +  +VG PGET+ DF   ++ V +  + +  +F YS   GT      
Sbjct: 278 RRMREEVPGIHLRTTLMVGHPGETEQDFEELVEFVKEARFERMGAFAYSHEEGTYSFKHY 337

Query: 380 -EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PW 434
            + +D +VK +RL  L +         N + +G+  +V+I++  +E    VGR+    P 
Sbjct: 338 TDDIDPDVKQDRLDYLMRIQEGISAEVNGSKIGKEFKVMIDR--EEDDFYVGRTEFDSPE 395

Query: 435 LQSVVLNSKNHN--IGDIIKVRITDVKISTLYGELV 468
           +   +L SK      G    VRI D +   LYG ++
Sbjct: 396 VDPEILVSKEKPLIPGTFYNVRIDDAQAFDLYGSVL 431


>gi|257467710|ref|ZP_05631806.1| Fe-S oxidoreductase [Fusobacterium ulcerans ATCC 49185]
 gi|317062003|ref|ZP_07926488.1| Fe-S oxidoreductase [Fusobacterium ulcerans ATCC 49185]
 gi|313687679|gb|EFS24514.1| Fe-S oxidoreductase [Fusobacterium ulcerans ATCC 49185]
          Length = 432

 Score =  348 bits (892), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 119/442 (26%), Positives = 218/442 (49%), Gaps = 15/442 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +R    + GC++N Y++  +++    + Y      ++AD+ ++N+C +   A  K  + L
Sbjct: 5   KRVAFYTLGCKVNQYETESIKNQLLKKEYTETAFEEEADIYIVNSCTVTSVADRKTRNML 64

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R +       K   + +V+V GC AQ   +E+L     ++ V+G      +   +E   
Sbjct: 65  RRAK-------KINPEGIVIVTGCYAQTNSKELL-EMEEIDYVIGNSDKNAIVNFIEDIE 116

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
              R ++   +     +           +    A++ IQ+GC+ FC++C +P+ RG   S
Sbjct: 117 --NRTMEKVKNHNIFLDNEYTEYEFATLREMSRAYVKIQDGCNNFCSYCKIPFARGKSRS 174

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R    ++ E  KL++ G  E+ L+G N+ A  G+ LD E   F  LL S+ EI  L R+R
Sbjct: 175 RKKYNIIKEIEKLVEEGFKEVILIGINLGA-YGEDLD-EGENFESLLKSILEINKLERVR 232

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
             + +P  +SD  +        LMP+LH+ +QS  D +LK M R++ +      + +++ 
Sbjct: 233 IGSVYPDKISDEFMD-MFKNKKLMPHLHISLQSCDDDVLKRMRRKYGSSLIEDRLLKLKE 291

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
              D+  ++D IVGFPGET++ F+ + DL++KIG++    F+YS R  T  S+  +++D 
Sbjct: 292 KVEDMEYTADVIVGFPGETEEMFQKSYDLIEKIGFSGIHIFQYSDRENTLASSFTDKIDA 351

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
            +K ER   L+    +      +  +G+ + VL+E+  +E G L G S     V +    
Sbjct: 352 KIKKERADRLEALKMKMAEKEREKYIGKHLNVLLEE--RENGYLYGYSENYLRVKVKDNE 409

Query: 445 HNIGDIIKVRITDVKISTLYGE 466
             +  II V+I  ++   L  +
Sbjct: 410 IKLNSIINVKINSLEKEMLIAD 431


>gi|323473663|gb|ADX84269.1| RNA modification enzyme, MiaB family [Sulfolobus islandicus REY15A]
 gi|323476314|gb|ADX81552.1| RNA modification enzyme, MiaB family [Sulfolobus islandicus
           HVE10/4]
          Length = 421

 Score =  348 bits (892), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 130/444 (29%), Positives = 225/444 (50%), Gaps = 30/444 (6%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +  +V++YGC +N  D+  M  +  S+GY  V + ++AD+I+LNTC +R +  E++   +
Sbjct: 2   KTIYVETYGCALNRADTYVMMTLLKSEGYNFVENPENADIIILNTCAVRLETEERMKQRI 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             +  L            +VVAGC++ AE   +L  +P  +++ GPQ+  R+ +++ ++ 
Sbjct: 62  KELNTLSKK---------LVVAGCMSSAEPATVLSIAPNASLI-GPQSVERIIDVI-KSE 110

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
             K V++ D ++                  G  A + + +GC   C+FC+    R    S
Sbjct: 111 ERKIVLEGDRALITP-----------RTFDGKIAIIPVADGCAGNCSFCITKLARRKLRS 159

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
             L ++V+ AR  +  G  EI L GQ+  A  G  L G   +  D++  ++EI G   +R
Sbjct: 160 YPLREIVNAARDAVKAGAKEIELTGQDTAA-YGLDL-GGSISLVDVVNKVTEIDGDFMIR 217

Query: 265 YTTSHPRDMSDC---LIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
                P         LI+   +   +  ++HLPVQSG DR+LK MNR++T  EY++++  
Sbjct: 218 IGMMTPEQAMRIIDNLIEVMRN-PKVYKFIHLPVQSGDDRVLKLMNRKYTIDEYKELVSE 276

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           IRS  P   I++D I+G PGE +D F  T+ L+ ++ + +     YS R  T  ++M  Q
Sbjct: 277 IRSKIPFANITTDIIIGHPGEDEDAFNNTLLLMKELRFERIHLAMYSIRPNTRSASMP-Q 335

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           V ++VK +R+    K   +  +S +   VG    V+  + G++ G +VGR      VV+ 
Sbjct: 336 VPDSVKKKRIQIANKLYEDIALSIHLEYVGSTSRVITTELGRK-GSVVGRLMNYIPVVIK 394

Query: 442 SKNHNIGDIIKVRITDVKISTLYG 465
           S+N  +G    V+IT+     L G
Sbjct: 395 SENVELGKWYNVKITEASFYDLRG 418


>gi|310779510|ref|YP_003967843.1| MiaB-like tRNA modifying enzyme [Ilyobacter polytropus DSM 2926]
 gi|309748833|gb|ADO83495.1| MiaB-like tRNA modifying enzyme [Ilyobacter polytropus DSM 2926]
          Length = 437

 Score =  348 bits (892), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 122/444 (27%), Positives = 223/444 (50%), Gaps = 19/444 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++    + GC++N Y++  ++      GY+ VN  D AD+ ++N+C +   A  K  + L
Sbjct: 5   KKAAFCTLGCKVNQYETESIKKQLSDLGYDEVNFDDKADVYIVNSCTVTTIADRKTRNML 64

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL---E 141
            R +       K   D LV+  GC AQ   +++      ++ V+G      +  L+   E
Sbjct: 65  RRAK-------KNNPDSLVIATGCYAQTNAKDLEG-IKEIDYVIGNSDKSGIINLINNIE 116

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
             +  +RV+  +     ++E L         +    A++ IQ+GC+ FC++C +P+ RG 
Sbjct: 117 SEKTSERVIHRNIFDAKEYEELEFSTL----REMSRAYIKIQDGCNNFCSYCKIPFARGK 172

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
             SR L  ++ EA  L   G  EI ++G N+    G+ +  E   F  LL  +S++ G+ 
Sbjct: 173 SRSRKLKSILKEAVILAKEGFKEIIIIGINLG-VYGEDIP-ENGDFETLLDEISKVDGIE 230

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R  + +P  +SD  I+   +   LMP+LH+ +QS  D ILK+MNR + +   ++ + +
Sbjct: 231 RIRIGSMYPDKISDRFIELMKNNSKLMPHLHISLQSCDDEILKAMNRNYDSQLIKERLLK 290

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +++   +I  ++D IVGFPGE + +F  T+ ++ ++G++    F+YS R  T  S + E+
Sbjct: 291 LKNTVENIEYTADVIVGFPGENEKNFENTVSVIKEVGFSDLHIFQYSDRENTAASRLPEK 350

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           VD   K  R   L+      Q    +  VG+ +EVL+E+   + G   G S     V + 
Sbjct: 351 VDSKTKKSRAEKLENLKVNMQKLLGERYVGKTMEVLVEET--KNGNTYGYSRNYIKVEIV 408

Query: 442 SKNHNIGDIIKVRITDVKISTLYG 465
                + ++++V I+ V+   L G
Sbjct: 409 DYLGKVNELVEVLISGVENGRLRG 432


>gi|227538337|ref|ZP_03968386.1| 2-methylthioadenine synthetase [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227241852|gb|EEI91867.1| 2-methylthioadenine synthetase [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 447

 Score =  348 bits (892), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 117/448 (26%), Positives = 224/448 (50%), Gaps = 17/448 (3%)

Query: 20  QCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEK 79
           + I+ ++    + GC++N  ++  +  +F   GYE       AD+ V+NTC + + A +K
Sbjct: 5   KIIMNKKVAFYTLGCKLNFSETSSIGRIFKDAGYETTAFNSQADVYVINTCSVTDHADKK 64

Query: 80  VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL 139
               +          +K   +  + + GC AQ + +EI    P V++V+G    + + E 
Sbjct: 65  CRKVVKEA-------LKYSPNAYITIVGCYAQLKPQEIAN-IPGVDMVLGAAEKFNIIEH 116

Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           +      ++ +  +  +++  + +S    G         FL +Q+GCD  CTFC +P  R
Sbjct: 117 INDLTKQEKTIVHNAPIDETNQFVSAYSIG----DRTRTFLKVQDGCDYSCTFCTIPLAR 172

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G   S  +  +V +A ++  +GV EI L G N+  +  +  +  +  F DL+ +L E++G
Sbjct: 173 GASRSGKIEDIVRQAEEIAASGVKEIVLTGVNIGDFGVRDGE-RQDRFLDLVKALDEVEG 231

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           + R+R ++  P  +++ +I+        +P+ H+P+QSG+++IL  M RR+    Y + +
Sbjct: 232 IDRIRISSIEPNLLANDIIEFVAQSKRFVPHFHMPLQSGNNKILGMMRRRYKRELYAERV 291

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
           ++I+S+ PD  I  D IVGFPGET +DF  T + ++++  +    F YS R  T  + M 
Sbjct: 292 EKIKSLMPDCCIGVDVIVGFPGETREDFLDTYNFLNEMDISYLHVFTYSERENTIAAQME 351

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV 439
             V    +++R   L     +++ +F +  + +I +VL E   +++G + G S     V 
Sbjct: 352 GAVPGAQRSDRSKMLHILSEKKRRAFYENQLSKIGDVLFES-DEKEGFMHGFSKNYVKVR 410

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGEL 467
                  + ++I+VR T V      GE+
Sbjct: 411 TAYDPLLVNEVIQVRFTSVAE---TGEV 435


>gi|52840922|ref|YP_094721.1| ribosomal protein S12 methylthiotransferase [Legionella pneumophila
           subsp. pneumophila str. Philadelphia 1]
 gi|81378010|sp|Q5ZXP6|RIMO_LEGPH RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|52628033|gb|AAU26774.1| Fe-S oxidoreductase [Legionella pneumophila subsp. pneumophila str.
           Philadelphia 1]
          Length = 435

 Score =  348 bits (892), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 126/461 (27%), Positives = 206/461 (44%), Gaps = 41/461 (8%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           +  +    S GC   + DS R+     +QGYE V +  DA ++V+NTC   + A ++   
Sbjct: 1   MNHKVGFVSLGCPKALVDSERIITQLKAQGYELVPTYQDAGVVVINTCGFIDSAVQESLD 60

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +      K +  + G    V+V GC+  A+ + I    P V  + G   Y  +   + +
Sbjct: 61  TI------KEAMAENGR---VIVTGCLG-AKADVIKNACPDVLHISGAHAYEEVVNAVHQ 110

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
                          D F +L I   G        A+L I EGC++ CTFC++P  RG  
Sbjct: 111 YLP---------PPADPFTQL-IPPQGIKLTPRHYAYLKISEGCNQKCTFCIIPTMRGKL 160

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE---------KCTFSDLLYS 253
            S  ++Q++ EA+KL   GV E+ ++ Q+ +A  G     +            F DL   
Sbjct: 161 QSYPMAQILTEAKKLKQAGVKELLVISQDTSA-YGVDTRYQQVEWQGKTVNTRFYDLCEQ 219

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
           L E+   VRL Y   +P       +       +++PYL +P+Q  + RILK+M R  ++ 
Sbjct: 220 LGELGIWVRLHYVYPYPHVDDIVPLM---RDGLILPYLDIPLQHANSRILKAMKRPASSE 276

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
                I   R + PDI + S FIVGFPGET+++F   +  + +    +   FKYSP  G 
Sbjct: 277 NTLLRIASWREICPDITLRSTFIVGFPGETEEEFSELLAFLKEAQLDRVGCFKYSPVEGA 336

Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS- 432
             +++   V E++K ER     +   E   +     +G    VLI++   +  +++ RS 
Sbjct: 337 KANDLDNPVSEDIKEERYHRFMQVQAEISRNKLKNKIGSTQTVLIDEINDD--QIIARSK 394

Query: 433 ---PWLQSVVL--NSKNHNIGDIIKVRITDVKISTLYGELV 468
              P +  +V    +    +G   +V ITD     LY  LV
Sbjct: 395 SDAPEIDGLVYLPKTSGITVGSFAEVVITDSDDYDLYASLV 435


>gi|300794023|ref|NP_001179620.1| CDK5 regulatory subunit-associated protein 1-like 1 [Bos taurus]
 gi|297489483|ref|XP_002697591.1| PREDICTED: CDK5 regulatory subunit associated protein 1-like 1 [Bos
           taurus]
 gi|296474090|gb|DAA16205.1| CDK5 regulatory subunit associated protein 1-like 1 [Bos taurus]
          Length = 578

 Score =  348 bits (892), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 116/459 (25%), Positives = 211/459 (45%), Gaps = 24/459 (5%)

Query: 15  SQIVDQCIVP-QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIR 73
           S   D  I   Q+ +++++GC  N  D   M     + GY+   +  DADL +LN+C ++
Sbjct: 52  SPPSDSTIPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVK 111

Query: 74  EKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTY 133
             A +   + + + +              +V+AGCV QA+  +   +      ++G Q  
Sbjct: 112 NPAEDHFRNSIKKAQEENKK---------IVLAGCVPQAQPRQDYLKG---LSIIGVQQI 159

Query: 134 YRLPELLERARFGKRVVDTDYSVED-KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTF 192
            R+ E++E    G  V       ++ K    + +D    RK  +   ++I  GC   CT+
Sbjct: 160 DRVVEVVEETIKGHSVRLLGQKKDNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTY 219

Query: 193 CVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLY 252
           C   + RG   S  + ++VD A++    GVCEI L  ++  A  G+ +     +   LL+
Sbjct: 220 CKTKHARGNLASYPIDELVDRAKQSFQEGVCEIWLTSEDTGA-YGRDI---GSSLPALLW 275

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGD---LDVLMPYLHLPVQSGSDRILKSMNRR 309
            L E+     +              ++          +  +LH+PVQS SD +L  M R 
Sbjct: 276 KLVEVIPEGAMLRLGMTNPPYILEHLEEMAKILHHPRVYAFLHIPVQSASDTVLMEMKRE 335

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369
           +   ++++++D ++   P I I++D I GFPGETD DF+ T+ LV++  +   F  ++ P
Sbjct: 336 YCVADFKRVVDFLKDKVPGITIATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYP 395

Query: 370 RLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV 429
           R GTP + M EQV   VK +R   L +       +  D  +GQ  +VL+ +   +    V
Sbjct: 396 RPGTPAAKM-EQVPAQVKKQRTKELSRIF--HSYNPYDHKIGQRQQVLVTEESFDSKFYV 452

Query: 430 GRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
             + + + V++      +G +++V I +     + G+ V
Sbjct: 453 AHNRFYEQVLVPKNPTFMGKMVEVDIYESGKHFMKGQPV 491


>gi|148380361|ref|YP_001254902.1| RNA modification enzyme, MiaB family [Clostridium botulinum A str.
           ATCC 3502]
 gi|153932059|ref|YP_001384581.1| RNA modification protein [Clostridium botulinum A str. ATCC 19397]
 gi|153935820|ref|YP_001388097.1| RNA modification protein [Clostridium botulinum A str. Hall]
 gi|238065360|sp|A7FVY1|RIMO_CLOB1 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|238065364|sp|A5I4I1|RIMO_CLOBH RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|148289845|emb|CAL83953.1| radical SAM superfamily protein [Clostridium botulinum A str. ATCC
           3502]
 gi|152928103|gb|ABS33603.1| RNA modification enzyme, MiaB family [Clostridium botulinum A str.
           ATCC 19397]
 gi|152931734|gb|ABS37233.1| RNA modification enzyme, MiaB family [Clostridium botulinum A str.
           Hall]
          Length = 445

 Score =  348 bits (892), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 128/449 (28%), Positives = 213/449 (47%), Gaps = 21/449 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +  + S GC  N  DS  M      +  E V    +A +I++NTC   E A E+  + + 
Sbjct: 5   KVALVSLGCDKNRIDSELMLYKLNEE-AELVKDPKEAQVIIVNTCGFIETAKEESINTIL 63

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER-AR 144
           ++ + K    K     ++VV GC+ Q    E+    P +++++G   Y +L E ++   +
Sbjct: 64  QMASYK----KTHNCKVLVVTGCLTQRYKGELKELIPEMDIMLGVNDYDKLLESIKVFLK 119

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G++     YS     E   I+          TA++ I EGC+ FCT+C +P  RG   S
Sbjct: 120 SGEKSFYHKYSDTKINEGNRIL-----TTPTYTAYVRIAEGCNNFCTYCAIPRIRGKYRS 174

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R    ++ E   L   GV EI L+ Q+     G  + G+K    +LL  +S+++G+  +R
Sbjct: 175 RKKENILKEVENLAKQGVKEIILIAQDTTM-YGIDIYGKKV-LHELLRDISKVEGVKWIR 232

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
               +P +++  LI+   + D +  YL LP+Q  S+ +LK M R+ T      II ++R 
Sbjct: 233 LLYCYPEEITKELIEEIKNNDKVCKYLDLPIQQISNSVLKRMGRKTTKETIINIIKKLRK 292

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
               I + +  IVGFPGET+ +F    + V  +   +   FKYS   GT  + M EQ+DE
Sbjct: 293 EIEGITLRTSLIVGFPGETEGEFSELKEFVSDVKLDKLGVFKYSKEEGTSAALMEEQIDE 352

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVVL 440
            +K +R   +    +      N   +G+  EV++E    ++    GR    SP +   + 
Sbjct: 353 EIKEKREEEIMILQQSISKDINKEKIGKTYEVIVEGT--KEDMYYGRNYEMSPEIDGEIY 410

Query: 441 --NSKNHNIGDIIKVRITDVKISTLYGEL 467
               +N  IGDIIKV++T      L G +
Sbjct: 411 FEKDENVKIGDIIKVKVTHSLEYDLIGVV 439


>gi|300774217|ref|ZP_07084084.1| 2-methylthioadenine synthetase [Sphingobacterium spiritivorum ATCC
           33861]
 gi|300758896|gb|EFK55725.1| 2-methylthioadenine synthetase [Sphingobacterium spiritivorum ATCC
           33861]
          Length = 447

 Score =  348 bits (892), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 116/448 (25%), Positives = 223/448 (49%), Gaps = 17/448 (3%)

Query: 20  QCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEK 79
           + I+ ++    + GC++N  ++  +  +F   GYE       AD+ V+NTC + + A +K
Sbjct: 5   KIIMNKKVAFYTLGCKLNFSETSSIGRIFKDAGYETTAFNSQADVYVINTCSVTDHADKK 64

Query: 80  VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL 139
               +          +K   +  + + GC AQ + +EI    P V++V+G    + + E 
Sbjct: 65  CRKVVKEA-------LKYSPNAYITIVGCYAQLKPQEIAN-IPGVDMVLGAAEKFNIIEH 116

Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           +      ++ +  +  +++  + +S    G         FL +Q+GCD  CTFC +P  R
Sbjct: 117 INDLTKQEKTIVHNAPIDETNQFVSAYSIG----DRTRTFLKVQDGCDYSCTFCTIPLAR 172

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G   S  +  +V +A ++  +GV EI L G N+  +  +  +  +  F DL+ +L E++G
Sbjct: 173 GASRSGKIEDIVRQAEEIAASGVKEIVLTGVNIGDFGVRDGE-RQDRFLDLVKALDEVEG 231

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           + R+R ++  P  +++ +I+        +P+ H+P+QSG+++IL  M RR+    Y + +
Sbjct: 232 IDRIRISSIEPNLLANDIIEFVAQSKRFVPHFHMPLQSGNNKILGMMRRRYKRELYAERV 291

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            +I+S+ PD  I  D IVGFPGET +DF  T + ++++  +    F YS R  T  + M 
Sbjct: 292 AKIKSLMPDCCIGVDVIVGFPGETREDFLDTYNFLNEMDISYLHVFTYSERENTIAAQME 351

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV 439
             V    +++R   L     +++ +F +  + +I +VL E   +++G + G S     V 
Sbjct: 352 GAVPGAQRSDRSKMLHILSEKKRRAFYENQLSKIGDVLFES-DEKEGFMHGFSKNYVKVR 410

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGEL 467
                  + ++I+VR T +      GE+
Sbjct: 411 TAYDPLLVNEVIQVRFTSITE---TGEV 435


>gi|121595452|ref|YP_987348.1| ribosomal protein S12 methylthiotransferase [Acidovorax sp. JS42]
 gi|238065275|sp|A1WAJ7|RIMO_ACISJ RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|120607532|gb|ABM43272.1| SSU ribosomal protein S12P methylthiotransferase [Acidovorax sp.
           JS42]
          Length = 463

 Score =  348 bits (892), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 130/485 (26%), Positives = 209/485 (43%), Gaps = 52/485 (10%)

Query: 14  VSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIR 73
           +SQ +     P+  FV S GC  N+ DS  +     ++GYE   + + ADL+++NTC   
Sbjct: 1   MSQALSPAKTPKIGFV-SLGCPKNLTDSELLLTQLSAEGYETSKTFEGADLVIVNTCGFI 59

Query: 74  EKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEE----ILRRSPIVNVVVG 129
           ++A ++    +G                 V+V GC+    GE     +    P V  V G
Sbjct: 60  DEAVKESLDTIGEALAENGK---------VIVTGCLGARAGETGGNLVKEVHPSVLAVTG 110

Query: 130 PQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIV---DGGYNRKRGVTAFLTIQEGC 186
           P     + E++                 D F  L      + G        A+L I EGC
Sbjct: 111 PHAAQEVMEVVHTHCP---------KPHDPFLDLVPGGFGEAGIKLTPRHYAYLKISEGC 161

Query: 187 DKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGL 240
           +  CTFC++P  RG  +SR +  V+ EA+ L + GV E+ ++ Q+ +A+      R    
Sbjct: 162 NHRCTFCIIPSMRGDLVSRPVGDVLKEAKALFEGGVKELLVISQDTSAYGVDVKYRTGFW 221

Query: 241 DGE--KCTFSDLLYSLSEI----KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP 294
           DG+  K    +L+  L E+       VRL Y   +P       + A G   +++PYL +P
Sbjct: 222 DGKPVKTRTLELVQKLGEMAATYGAWVRLHYVYPYPSVDDIIPLMAQG---LVLPYLDVP 278

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
            Q     +LK M R  +  +  + I R R   P+I I S FI GFPGET+++F+  +D V
Sbjct: 279 FQHSHPDVLKRMKRPASGEKNLERILRWREACPEIVIRSTFIAGFPGETEEEFQHLLDFV 338

Query: 355 DKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQII 414
            +    +A  F YS   G   + +   +   ++ ER         E   +     VGQ +
Sbjct: 339 REAQIDRAGCFAYSDVEGAAANELPGMLPMELREERRARFMAVAEEVSTAKLQRRVGQTM 398

Query: 415 EVLIEK-----HGKEKGKLVGRSPWLQSVVL------NSKNHNIGDIIKVRITDVKISTL 463
           +VL+++          G+    +P +  VV        SK + +GD +K RI   +   L
Sbjct: 399 QVLVDQAVGLGKKGGVGRSYADAPEIDGVVHLLPPEKFSKTYKVGDFVKARIVGTQGHDL 458

Query: 464 YGELV 468
            G  V
Sbjct: 459 VGVPV 463


>gi|237755825|ref|ZP_04584424.1| conserved hypothetical protein [Sulfurihydrogenibium yellowstonense
           SS-5]
 gi|237692013|gb|EEP61022.1| conserved hypothetical protein [Sulfurihydrogenibium yellowstonense
           SS-5]
          Length = 430

 Score =  348 bits (892), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 119/450 (26%), Positives = 210/450 (46%), Gaps = 35/450 (7%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC  N+ D+  +             + ++AD+I++NTC   E A E+    + 
Sbjct: 5   KINFISLGCPKNLVDTEVLIGKLNQGNISFTANPEEADVILINTCGFIEPAKEESIETIL 64

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
               LK +  K      ++V GC+ +   +E+ +  P V+  +  +   ++P        
Sbjct: 65  EAVKLKQNSNK-----KIIVTGCLVERYKQELEKEIPEVDYFIDLKNQSQIP-------- 111

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
               V  D   ++  +R+             TA+L I EGCD  C+FC +P  RG   S+
Sbjct: 112 ----VLFDIKPKENTKRIISTPKH-------TAYLKISEGCDHTCSFCAIPNIRGKHRSK 160

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            +  +V+EA+ L D GV E+ ++ Q+  ++ G  L G+   F +LL  L +I G+  +R 
Sbjct: 161 PIEALVEEAKYLADLGVKELNIVSQDT-SYYGYDLYGKPMLF-ELLRQLEKIDGIKWIRL 218

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
              +P  + +   K   D + ++ Y+ +P+Q   D+ILK M R +   +  QI+D     
Sbjct: 219 YYLYPSTVDEDFFKFIKDSEKILHYIEMPIQHSEDKILKDMMRGYRKKKLYQILDWKEKY 278

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQVDE 384
            PD+AI S  IVG+P ET++DF +  + + +  +     F YS   GTP      +++ +
Sbjct: 279 TPDMAIRSSVIVGYPMETEEDFESLKNFLQEAQFDWLGVFVYSHEEGTPAYQKHKDKIPK 338

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL-VGRSP----WLQSVV 439
             K  RL  +           N + +G+ ++++I+   +E   L +GRS      +  +V
Sbjct: 339 KEKIRRLNEISALQEGITEQKNKSLIGKELDIIIDGFSEEWETLPIGRSYRSAFEIDGIV 398

Query: 440 L--NSKNHNIGDIIKVRITDV-KISTLYGE 466
               ++  N+GDIIKVRI D      + GE
Sbjct: 399 YVETTEPVNVGDIIKVRIKDTIDKYDVVGE 428


>gi|239996912|ref|ZP_04717436.1| MiaB-like tRNA modifying enzyme YliG [Alteromonas macleodii ATCC
           27126]
          Length = 484

 Score =  348 bits (892), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 131/454 (28%), Positives = 206/454 (45%), Gaps = 34/454 (7%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R    S GC  N+ DS R+     ++GY+ V + +DADL+++NTC   + A E+    +G
Sbjct: 38  RIGFVSLGCPKNLVDSERILTQLRTEGYDVVPTYNDADLVIVNTCGFIDAAVEESLDTIG 97

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
               LK +         V+V GC+   E +EI    P V  + GP  Y  + E +     
Sbjct: 98  EA--LKENGK-------VIVTGCLGVKE-DEIRELHPNVLAITGPHAYETVVEQVHDHL- 146

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                       + FE L I D G        A+L I EGC+  CTFC++P  RG  +SR
Sbjct: 147 -------PKPQHNPFEDL-IPDHGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGDLVSR 198

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNA------WRGKGLDGE--KCTFSDLLYSLSEI 257
            +  V+DEA++L D GV E+ ++ Q+ +A       R    +G   K     L   L E+
Sbjct: 199 PVGNVLDEAKRLKDAGVKELLVISQDTSAYGVDVKHRTGFWNGMPVKAHMQQLCEKLGEM 258

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
              VRL Y   +P       +    +   ++PYL +P Q  + RILK M R  +A    +
Sbjct: 259 GIWVRLHYVYPYPHVDDLIPLM---NEGKILPYLDIPFQHANKRILKLMKRPGSAERVLE 315

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
            + + R   P + I S FIVGFPGET+++F   +D + +    +  +F YSP  G   ++
Sbjct: 316 RVKKWREQCPSLVIRSTFIVGFPGETEEEFEELLDFLREAQLDRVGAFAYSPVEGARAND 375

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPWL 435
           + + V E VK  RL    +   E   +   A +G   +V+I+    E   G+    +P +
Sbjct: 376 LPDPVPEEVKQARLARFMEVQGEISAARLQARIGNEYQVVIDSVDAEGAVGRTYADAPEV 435

Query: 436 QS-VVLNSK-NHNIGDIIKVRITDVKISTLYGEL 467
              V LN   +   GD +   +       ++  L
Sbjct: 436 DGLVHLNGVYDVKPGDRVWAEVIHANEHDVWAVL 469


>gi|57641999|ref|YP_184477.1| 2-methylthioadenine synthetase [Thermococcus kodakarensis KOD1]
 gi|57160323|dbj|BAD86253.1| probable 2-methylthioadenine synthetase [Thermococcus kodakarensis
           KOD1]
          Length = 427

 Score =  348 bits (892), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 120/445 (26%), Positives = 215/445 (48%), Gaps = 27/445 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R +V+SYGC  N  D   ME +    GYE   S + AD +V+NTC +++    K+   + 
Sbjct: 3   RVYVESYGCTRNKADGEIMEAILLRAGYELAESPESADYVVVNTCAVKDPTEHKMARRIR 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            + +             V+  GC+     + I    P V+ ++G ++  R+ E ++ A  
Sbjct: 63  ELLD---------SGKKVIATGCLVHVNPDVI---DPRVSGMLGVKSIDRIAEAIDLAER 110

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G ++V  +   E K ++L +       K GV   + I EGC   CT+C   + RG+  S 
Sbjct: 111 GGKLVSVEGWKERKVDKLELPRLW---KSGVVFVVPISEGCLNACTYCATRFARGVLKSY 167

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
               V+   ++ +  G  EI L  ++     G  +       ++LL  ++ I+G  R+R 
Sbjct: 168 KPELVLKWVKEALARGYKEIQLSSEDTG-CYGFDI---GTNLAELLDEITAIEGDFRIRV 223

Query: 266 TTSHPRD---MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
              +P       D LI+ + D   +  +LHLPVQSG + +L+ M R +T  E+ +I+   
Sbjct: 224 GMMNPNHVIKFLDELIEVYQD-PKVYKFLHLPVQSGDNEVLRRMGRNYTVEEFEEIVSEF 282

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R   P + +++D IVGFPGE ++ F+ T++LV ++   +    +YSPR GT  +   +Q+
Sbjct: 283 RRKIPGLNLNTDIIVGFPGEGEEAFQNTVELVKRVRPDKINVSRYSPRPGTIAAKW-KQL 341

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
                 ER   L +   +     N   +G+ +EVL+   G++ G +  R+   + ++L++
Sbjct: 342 PGWKVKERSRILHRLRLQIAYEINQTYLGKKVEVLVHGPGEKGG-IDARTFNYKEIILDA 400

Query: 443 KNHNIGDIIKVRITDVKISTLYGEL 467
                G+I + +IT    + L GE+
Sbjct: 401 GEK--GEITRAKITWAGSTYLRGEM 423


>gi|296135795|ref|YP_003643037.1| MiaB-like tRNA modifying enzyme YliG [Thiomonas intermedia K12]
 gi|295795917|gb|ADG30707.1| MiaB-like tRNA modifying enzyme YliG [Thiomonas intermedia K12]
          Length = 466

 Score =  348 bits (892), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 123/474 (25%), Positives = 198/474 (41%), Gaps = 55/474 (11%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC   + DS R+     +QGY+   S   ADL+++NTC   + A ++    +G
Sbjct: 17  KIGFVSLGCPKALVDSERILTELRAQGYDTSKSYAGADLVIVNTCGFIDAAVQESLDAIG 76

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEE-----ILRRSPIVNVVVGPQTYYRLPELL 140
                            V+V GC+            +    P V  V GP     + + +
Sbjct: 77  EALAENGK---------VIVTGCLGARNDAATGNNLVREVHPKVLAVTGPHATDEVLQHV 127

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
                            D F  L +   G        A+L I EGC+  CTFC++P  RG
Sbjct: 128 HAVLP---------KPHDPFIDL-VPPAGIKLTPKHYAYLKISEGCNHRCTFCIIPAMRG 177

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLY 252
             +SR + +V+ EAR L  +GV E+ ++ Q+ +A+      R    DG   +   ++L+ 
Sbjct: 178 DLVSRPIGEVLSEARALFASGVKELLVVSQDTSAYGVDVKYRTGFWDGRPIRTRMTELVD 237

Query: 253 SL----SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
           +L    +E    VRL Y   +P       + A G    ++PYL +P+Q     +LK M R
Sbjct: 238 ALGSLAAEHDAWVRLHYVYPYPHVDEVLPLMAQG---RILPYLDVPLQHAHPDVLKRMKR 294

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
             +     + I R R + P++ + S FI GFPGET+ +F+  +D + +    +   F YS
Sbjct: 295 PASGERNLERIARWREICPELVVRSTFIAGFPGETEAEFQTLLDFIREAELDRVGCFAYS 354

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL 428
           P  G   + + + V E ++ ER         E         VGQ++ VL+++  +E G  
Sbjct: 355 PVEGAAANALADPVPEALREERRARFMAVAEEVSTRKLHKRVGQVMRVLVDQASREGG-- 412

Query: 429 VGRS----PWLQSVVLNSKNHNI----------GDIIKVRITDVKISTLYGELV 468
           VGR+    P +   V                  G  ++ RI       L GELV
Sbjct: 413 VGRTFADAPEIDGKVHLLPPDKPSTKMRLAQSGGQFVRARIVRTDGHDLVGELV 466


>gi|148553566|ref|YP_001261148.1| ribosomal protein S12 methylthiotransferase [Sphingomonas wittichii
           RW1]
 gi|238066606|sp|A5V3Z4|RIMO_SPHWW RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|148498756|gb|ABQ67010.1| MiaB-like tRNA modifying enzyme YliG [Sphingomonas wittichii RW1]
          Length = 452

 Score =  348 bits (892), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 127/470 (27%), Positives = 205/470 (43%), Gaps = 41/470 (8%)

Query: 16  QIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREK 75
            +  +   P +  + S GC  N+ DS R+     S GY        AD++++NTC   + 
Sbjct: 5   PMAIELPSPPKIGMVSLGCPKNLVDSERILTKLRSDGYGLSPDYAGADVVLVNTCGFLDS 64

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135
           A E+    +G              +  V+V GC+   E E I  R P V  + G   Y  
Sbjct: 65  AKEESLEAIGEA---------IAENGRVIVTGCMGD-EAEAIRARFPKVLAITGAHQYEE 114

Query: 136 LPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
           +   +  A            V        + + G        ++L I EGC+  C+FC++
Sbjct: 115 VVGAVHDAA----------PVPPSPYVDLVPEAGLKLTPRHYSYLKISEGCNHRCSFCII 164

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE----------KC 245
           P  RG  +SR    ++ EA KL+  G  E+ ++ Q+ +A  G  L  +          + 
Sbjct: 165 PSIRGDLVSRRPDAILREAEKLVAAGTRELLVISQDTSA-YGLDLRHKAFPLKGGGEVRA 223

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
             +DL   L ++   VRL Y   +P       + A G   ++ PYL +P Q  S  +LK+
Sbjct: 224 HMTDLARELGKLGAWVRLHYVYPYPHVDHVIPLMAEG---LITPYLDIPFQHASPPVLKA 280

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           M R     +  + I   R++ PDIAI S F+VGFPGET++DF+  +D +D+    +  +F
Sbjct: 281 MKRPANEAKVLERIAGWRAICPDIAIRSTFVVGFPGETEEDFQYLLDWLDEAQLDRVGAF 340

Query: 366 KYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK 425
           ++ P  G   +++   V E VK ER   +  K      +   A VG+ ++V+I+    E 
Sbjct: 341 RFEPVAGAAANDLPGAVPEEVKEERYARIMAKTAAISAAKLAAKVGRTLDVIIDAVDDEG 400

Query: 426 GKLVGRS----PWLQSVVL--NSKNHNIGDIIKVRITDVKISTLYGELVV 469
           G   GRS    P +   V   ++     G I+ V I D     L+G  V 
Sbjct: 401 G-ATGRSQADAPEIDGEVHLRDAGGLEPGAIVAVEIEDADEHDLFGVPVA 449


>gi|327403999|ref|YP_004344837.1| MiaB-like tRNA modifying enzyme [Fluviicola taffensis DSM 16823]
 gi|327319507|gb|AEA43999.1| MiaB-like tRNA modifying enzyme [Fluviicola taffensis DSM 16823]
          Length = 448

 Score =  347 bits (891), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 128/448 (28%), Positives = 224/448 (50%), Gaps = 25/448 (5%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++    + GC++N  ++  +  +F + G+ +V+  +  D++V+NTC + E A +K    +
Sbjct: 5   KKVAFYTLGCKLNFSETSTISRLFENAGFAKVDFEETPDILVINTCSVTENADKKCKQLV 64

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R         K   ++ V + GC AQ +  EI  + P V++V+G    + + E LE   
Sbjct: 65  RRAH-------KINPEVFVAIIGCYAQLKPTEIA-QIPGVSLVLGANEKFNIVEHLEALE 116

Query: 145 FGKRVVDTDYSVED--------KFERLSIVD---GGYNRKRGVTAFLTIQEGCDKFCTFC 193
                 ++     +        KFE +         ++      +FL IQ+GCD FCTFC
Sbjct: 117 HENHTENSSAINGENEKQGAVVKFENIKQTTSFIPSHSMGDRTRSFLKIQDGCDYFCTFC 176

Query: 194 VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS 253
            +P  RG   + S+S  V EARK+ +  + E+ L G N+    G    GE   F +L+ +
Sbjct: 177 TIPLARGKSRNASISDTVLEARKIAETNIKEVVLTGVNI----GDFGQGEGENFFELVKA 232

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKA-HGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
           L E+ G+ R R ++  P  +SD +I+    +    +P+ H+P+QSGS+R+LK+M R++  
Sbjct: 233 LDEVNGIDRYRISSIEPNLLSDEIIQFTLENSKRFVPHFHIPLQSGSNRLLKAMRRKYLR 292

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
             Y + +  I+ +RPD AI  D IVGFPGETD++F  TMD +  +  +    F YS R  
Sbjct: 293 ELYVERVQHIKKLRPDCAIGVDVIVGFPGETDEEFIETMDFLKDLDVSYLHVFTYSERAN 352

Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS 432
           T  + + + V   V+A+R   L     +++ +F ++ +G    VL E   +E+G + G +
Sbjct: 353 TTAAKLGDPVPNQVRAQRSKQLHILSDKKKRAFYESQIGSKRTVLFESE-EEEGIMYGFT 411

Query: 433 PWLQSVVLNSKNHNIGDIIKVRITDVKI 460
                V        +  I  V++T++  
Sbjct: 412 ENYVKVKTPFNPELVNQIQNVQLTEIDR 439


>gi|193215368|ref|YP_001996567.1| MiaB-like tRNA modifying enzyme YliG [Chloroherpeton thalassium
           ATCC 35110]
 gi|238065325|sp|B3QSS3|RIMO_CHLT3 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|193088845|gb|ACF14120.1| MiaB-like tRNA modifying enzyme YliG [Chloroherpeton thalassium
           ATCC 35110]
          Length = 434

 Score =  347 bits (891), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 114/454 (25%), Positives = 209/454 (46%), Gaps = 36/454 (7%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + ++ + GC  N+ DS  +     +          +AD I++NTC   +K+ ++    + 
Sbjct: 7   KLYLLTLGCSKNMVDSEVLLAQAKANQIYLAEDFHEADTILINTCGFIDKSKQESIDQIL 66

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                K +         V+V GC+++   + +    P V+   G +   ++   L     
Sbjct: 67  EAIRFKEA----KRIKKVIVFGCLSERYKDALREEIPEVDCYFGTRDLSQIIAELGGH-- 120

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                   Y      ER  +    +       ++L I EGCD  C FC +P  RG ++SR
Sbjct: 121 --------YKTHLLGERELLTPPYF-------SYLKISEGCDHPCAFCAIPLMRGKQVSR 165

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            + +++ EA+KL + GV E+ L+ Q+   + G  L+G++   ++LL  LS+++    +R 
Sbjct: 166 PIDELLLEAKKLKEKGVRELCLIAQDTT-YYGHDLNGKRQ-LAELLQRLSDLQFD-WIRL 222

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
             ++P      ++    + + +  YL LP+Q  SD +LKSM R  +  +  ++I +IRS 
Sbjct: 223 LYAYPAMFPTDILPVMRERENICKYLDLPLQHVSDEMLKSMRRGISKRKTTELIAQIRSE 282

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P I + +  +VG+P ET++ F   ++ V +  + +   F YS   GT    + + + E 
Sbjct: 283 VPGIRLRTTMLVGYPNETEEQFSELVEFVRETQFDRLGCFAYSHEEGTEAHELPDTLTEE 342

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVLN 441
            K  R+  L     E   + N A VG  + VLIE+   E    +GR+    P + + V+ 
Sbjct: 343 EKERRVELLMAAQEEIAYAKNQALVGSFMPVLIERF--EANFAIGRTEYDAPEVDNEVVI 400

Query: 442 S------KNHNIGDIIKVRITDVKISTLYGELVV 469
           +      K   +G   + RITD +   L+G LV+
Sbjct: 401 ALDEAEQKKVKVGTFYQARITDAEAFDLFGSLVL 434


>gi|239627763|ref|ZP_04670794.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239517909|gb|EEQ57775.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 460

 Score =  347 bits (891), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 132/472 (27%), Positives = 221/472 (46%), Gaps = 46/472 (9%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           +P +  + + GC++N Y++  M+      GY+ V   + AD+ ++NTC +   A  K   
Sbjct: 1   MP-KAALHNLGCKVNAYEAEAMQQQLREHGYDIVPFDEKADVYIINTCSVTNVADRKSRQ 59

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            L R + L         + +VV AGC  Q   + +   +  V+V++G     +L ++L+ 
Sbjct: 60  MLHRAKKL-------NPESVVVAAGCYVQVAADTLKEDA-CVDVIIGNNKKGQLVQILDE 111

Query: 143 ARFGKRVVDT---------DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC 193
              G+   D          D    D++E L +     N +    AF+ +Q+GC++FC++C
Sbjct: 112 YMEGRLKEDEGPKSGIHVLDIGGTDEYEPLHV----DNIEDHTRAFIKVQDGCNQFCSYC 167

Query: 194 VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC-------- 245
           ++PY RG   SR    V  E   L+  G  E+ L G +++++  +  +G           
Sbjct: 168 IIPYARGRVRSRKPEDVEAEVEGLVARGYKEVVLTGIHLSSYGMEHREGGPVQGGNWDHG 227

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
              DL+  +  I GL R+R  +  PR +++   +A   L    P+ HL +QSG D  LK 
Sbjct: 228 PLLDLIGRIHRIPGLERIRLGSLEPRIITEEFAEALAGLAKFCPHFHLSLQSGCDATLKR 287

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           MNR +T  +Y +    +R      AI++D IVGFPGET ++F  T + + K+ + +   F
Sbjct: 288 MNRHYTTEDYLRRCGILRKWFDHPAITTDVIVGFPGETQEEFEITREFLKKVHFYEMHVF 347

Query: 366 KYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK 425
           KYS R GT  + M +QV E VKA+R   L +        + +   G  + VL E   +  
Sbjct: 348 KYSKRAGTKAALMPDQVPEQVKAQRSDVLLELEASMSREYREHFAGSRVSVLFEDVAEVD 407

Query: 426 GK--LVGRSPWLQSVVLN----SKNHNIGDII---KVRITDVKISTLYGELV 468
           G+  + G +P      L      +N   G I+    VR+       L GEL+
Sbjct: 408 GRKYITGHTPQYVKAALPVKDGEENVLSGQILCLDAVRL-------LTGELL 452


>gi|157364894|ref|YP_001471661.1| MiaB-like tRNA modifying enzyme YliG [Thermotoga lettingae TMO]
 gi|238066616|sp|A8F8W3|RIMO_THELT RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|157315498|gb|ABV34597.1| MiaB-like tRNA modifying enzyme YliG [Thermotoga lettingae TMO]
          Length = 430

 Score =  347 bits (891), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 140/449 (31%), Positives = 218/449 (48%), Gaps = 26/449 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +  +K  GC  N  D   +E +   +G+E V+ +++A+ ++++TC   E A ++    + 
Sbjct: 2   KIGIKVLGCPKNEADCDVLEAILKDRGHEIVSDIEEAEAVIIDTCGFIESAKKESIDEII 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
              N K           + V GC+ Q   +E+ +  P V+  +G  + +++ E +E+A  
Sbjct: 62  TFANYKK-----YRPFFLCVKGCLVQRYSKELSKEIPEVDSWLGVLSPHQIAEAIEKA-- 114

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                 T Y VE       + +          A++ I +GCD+ CTFC +P  +G   SR
Sbjct: 115 ------TPYLVEKP---TVVYEEAPRSCNNSFAYVKIADGCDRSCTFCSIPLFKGRFKSR 165

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           S+  +  E  +L++ GV EI L+ Q+  A  G  L   K     LL  L+ I+G  R+R 
Sbjct: 166 SIESIYSEVERLVEIGVKEIILVAQDTTA-YGVDLY-NKAVLDQLLKKLNSIEGNFRIRV 223

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
              HP  ++D +I A   LD L+PY  +PVQ GSDRILK M R   + +  ++I  IRS 
Sbjct: 224 MYLHPDHLTDKMIDAICSLDKLLPYFDIPVQHGSDRILKQMGRIKNSEQLLELIAYIRSH 283

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            PD AI +  +VGFPGET+DDF+  +D ++K  + +   F YS   GT  S+M  +V E 
Sbjct: 284 NPDAAIRTSVMVGFPGETNDDFQKLLDFLEKAKFDRLGCFIYSDEEGTVSSSMKRKVSER 343

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVLN 441
           +  ER   L     +         VG+ + VLIE+  +     V RS    P +   V  
Sbjct: 344 IARERYENLLIFQSQIAYERLKRFVGKNLNVLIEQENEL--FYVARSHLDAPEVDGEVTV 401

Query: 442 SK--NHNIGDIIKVRITDVKISTLYGELV 468
            K    +I     VRITD     L GEL+
Sbjct: 402 KKTREVDIPGYYTVRITDSDEYDLKGELI 430


>gi|226226580|ref|YP_002760686.1| hypothetical protein GAU_1174 [Gemmatimonas aurantiaca T-27]
 gi|226089771|dbj|BAH38216.1| hypothetical protein [Gemmatimonas aurantiaca T-27]
          Length = 473

 Score =  347 bits (891), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 127/455 (27%), Positives = 204/455 (44%), Gaps = 31/455 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +F + + GC  N  DS R      + G E V  + DAD++V+NTC   + A  +    + 
Sbjct: 3   KFGLVTLGCDKNTVDSERYLADLVAHGAEAVQDLRDADVVVVNTCGFIDAAKAESIEAIV 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR-LPELLERAR 144
               LK+     G    V   GC+ +   +E+L   P V+V +G     R +PEL+ER  
Sbjct: 63  DAARLKDE----GRCKAVFAIGCMVERHKDELLEALPEVDVFLGNSETDRLVPELVERGL 118

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G  +V      E    RL   D  + R      +L I EGCD  C FC +P  RG   S
Sbjct: 119 IGGSLV------EHPGVRLFSGDAAHVR------YLKISEGCDHGCAFCAIPLMRGKHRS 166

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
            +L ++V EA+ L   G  EI L+ Q++  +     DG      +LL +L     +  +R
Sbjct: 167 FALDELVREAQLLEVQGAREINLVAQDLAHYGRDRRDGHG--LPELLEALVRETSIPWIR 224

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
               +   ++  L++       ++ YL  P+Q GSD +L  M R       R+ + R R 
Sbjct: 225 NMYLYSTGITPRLLEVIAAHPRIVRYLDTPMQHGSDAVLTRMRRPERQKTIRERLARYRD 284

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           + PD+A+ +  IVGFPGET+DDF    D ++++ + +   F YSP+ GT    M + V +
Sbjct: 285 IVPDLAVRTSVIVGFPGETEDDFNILCDFLEEMQFDRVGVFTYSPQEGTRAHAMEDDVAD 344

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPW----LQS-VV 439
           ++K ER   +++  R       +  +G+   VL+E+ G      + R+PW    +   V 
Sbjct: 345 SIKQERKERIEELQRAITAERYERFLGREARVLVERRGDYPDVWMARAPWQADDIDGLVH 404

Query: 440 LNSKNHN------IGDIIKVRITD-VKISTLYGEL 467
           ++            G  + V I   V        L
Sbjct: 405 VDVPESMRKVLVSPGAFVDVTIDHVVDDYDFAATL 439


>gi|54293668|ref|YP_126083.1| hypothetical protein lpl0721 [Legionella pneumophila str. Lens]
 gi|81369118|sp|Q5WYL5|RIMO_LEGPL RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|53753500|emb|CAH14955.1| hypothetical protein lpl0721 [Legionella pneumophila str. Lens]
          Length = 435

 Score =  347 bits (891), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 127/461 (27%), Positives = 208/461 (45%), Gaps = 41/461 (8%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           +  +    S GC   + DS R+     +QGYE V + +DA ++V+NTC   + A ++   
Sbjct: 1   MNHKVGFVSLGCPKALVDSERIITQLKAQGYELVPTYEDAGVVVINTCGFIDSAVQESLD 60

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +      K +  + G    V+V GC+  A+ + I    P V  + G   Y  +   + +
Sbjct: 61  TI------KEAMAENGR---VIVTGCLG-AKADVIKNACPDVLHISGAHAYEEVVNAVHQ 110

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
                          D F +L I   G        A+L I EGC++ CTFC++P  RG  
Sbjct: 111 HLP---------PPADPFTQL-IPPQGIKLTPRHYAYLKISEGCNQKCTFCIIPTMRGKL 160

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE---------KCTFSDLLYS 253
            S  ++Q++ EA+KL   GV E+ ++ Q+ +A  G     +            F DL   
Sbjct: 161 QSYPMAQILTEAKKLKQAGVKELLVISQDTSA-YGVDTRYQQVEWQGKTVNTRFYDLCEQ 219

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
           L E+   VRL Y   +P       +       +++PYL +P+Q  + RILK+M R  ++ 
Sbjct: 220 LGELGIWVRLHYVYPYPHVDDIVPLM---RDGLILPYLDIPLQHANSRILKAMKRPASSE 276

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
                I   R + PDI + S FIVGFPGET+++F   +  + +    +   FKYSP  G 
Sbjct: 277 NTLLRIASWREICPDITLRSTFIVGFPGETEEEFSELLAFLKEAQLDRVGCFKYSPVEGA 336

Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS- 432
             +++   V E++K ER     +   E   +     +G    VLI++  ++  +++ RS 
Sbjct: 337 KANDLDNPVSEDIKEERYHRFMQVQAEISRNKLKNKIGSTQTVLIDEITED--QIIARSK 394

Query: 433 ---PWLQSVVLNSK--NHNIGDIIKVRITDVKISTLYGELV 468
              P +  +V   K     +G   +V ITD     LY  LV
Sbjct: 395 SDAPEIDGLVYLPKISGITVGSFAEVVITDSDDYDLYASLV 435


>gi|154249967|ref|YP_001410792.1| MiaB-like tRNA modifying enzyme YliG [Fervidobacterium nodosum
           Rt17-B1]
 gi|238065356|sp|A7HMK2|RIMO_FERNB RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|154153903|gb|ABS61135.1| MiaB-like tRNA modifying enzyme YliG [Fervidobacterium nodosum
           Rt17-B1]
          Length = 431

 Score =  347 bits (891), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 134/447 (29%), Positives = 208/447 (46%), Gaps = 25/447 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + +V   GC  N  D    +      G+E V+ ++DAD +V++TC     A ++    + 
Sbjct: 5   KLYVIVLGCAKNEADFSLFKYHLKQLGHEVVDDVEDADGVVIDTCGFIVDAKQESIDTIL 64

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
              ++K    K+  D  V V GC+ Q   +++    P V+   G       P+ L  +  
Sbjct: 65  EFASIK----KQKPDFKVYVTGCLVQRYPKDLPLEIPEVDGWFGV----IPPKNLAESIN 116

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
             +   TD     +FE     D  Y       A++ I +GCD+ CTFC +P  +G  +SR
Sbjct: 117 KTKKYITDPVAVYEFEGRVDSDLPY-------AYVKIADGCDRACTFCTIPKFKGGFVSR 169

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            L  +  E R LI+NG  EI L+ Q+     G  L G K    +LL  +++I G   +R 
Sbjct: 170 KLEDIEKEVRYLIENGKKEIVLVAQDTTG-YGVDLYG-KQMLPELLKRINDIDGNFWIRV 227

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
              HP  ++D ++K     + ++ Y  +P+Q  SD ILK M R  +  E  ++ D+IRS+
Sbjct: 228 MYMHPDHVTDEILKGF-SYEKVVKYFDIPIQHSSDNILKLMGRTKSTKELEELFDKIRSL 286

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P   + +  IVGFPGET DDF   +D +  I + +   F YS        N+  +V   
Sbjct: 287 YPQAVLRTSIIVGFPGETKDDFEQLIDFIRTIEFDRLGGFVYSDEEDAASYNLPNKVSLK 346

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVLN 441
              +RL  L +   E     N   VG++I+VL E+     G ++GRS    P +   V  
Sbjct: 347 TAQKRLDTLMEVQAEISFLRNQRLVGKVIDVLFEEEV--NGVIIGRSYMDAPEVDGNVFV 404

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
            K H I    KV+IT+     L GELV
Sbjct: 405 -KGHGINRFGKVKITEADTYDLEGELV 430


>gi|257784586|ref|YP_003179803.1| MiaB-like tRNA modifying enzyme YliG [Atopobium parvulum DSM 20469]
 gi|257473093|gb|ACV51212.1| MiaB-like tRNA modifying enzyme YliG [Atopobium parvulum DSM 20469]
          Length = 468

 Score =  347 bits (890), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 124/456 (27%), Positives = 214/456 (46%), Gaps = 30/456 (6%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
            ++ + GC  N  D+ RM  +  + G+  V   + AD+ ++NTC     A E+       
Sbjct: 17  LYI-TLGCAKNEVDTDRMRALLLASGFGEVADPESADVAIINTCSFLASATEESIETTLE 75

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           I    +  +++     +++ GCV    G E+  + P V   V       +  ++      
Sbjct: 76  IAEGASEGVRKLP---IIMCGCVPSRYGAELNEQLPEVAAFVPADQEDGIVSIVADVLN- 131

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
                    + +  + +    G      G +AF+ I EGCD+FC FC +PY RG   SR 
Sbjct: 132 ---------IPEPTQSIVAAHGMLRTIDGASAFVKISEGCDRFCAFCAIPYIRGHYHSRP 182

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAW---RGKGLDGEKCTFSDLLYSLSEI----KG 259
             +++ E ++L+D GV E+ L+GQ+   W        DG+  T + L+  ++E+    KG
Sbjct: 183 AEEILQEVKELMDGGVREVILIGQDTGIWGSDMPDTEDGQTPTLAKLMQKVAEVVRSYKG 242

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
            +R+ Y       M+D LI    D   ++PY+ +P+Q  ++RILK M R  +  E R++ 
Sbjct: 243 WIRVLYLQPEG--MTDELISTIRDTPEVLPYIDIPIQHCNERILKRMGRSGSIQELRKLF 300

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
           DR+RS  P + + +  + GFPGETD++     D + +  +     F YSP  GT G+ M 
Sbjct: 301 DRLRSEIPGMVLRTTGMCGFPGETDEESDELYDFIQEQEFDYTSVFTYSPEEGTLGAKMS 360

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE--KHGKEKGKLVGRS----P 433
           +QV + VK ER   L   + +   +     VG+  EV+I+  +   E  +L+G +    P
Sbjct: 361 DQVPDEVKIERTQRLLDLVEQLGFAATARHVGERCEVIIDGIEESDEGTELIGHTWFQAP 420

Query: 434 WLQS-VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
                V +     ++GDI+   + D     + GE+V
Sbjct: 421 DCDGAVHIAEGEASVGDIVLCDLVDSFCYEMIGEIV 456


>gi|312178702|gb|ADQ39284.1| hypothetical protein nle15_1 [uncultured bacterium]
          Length = 444

 Score =  347 bits (890), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 120/443 (27%), Positives = 211/443 (47%), Gaps = 17/443 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++    + GC++N  ++  +   F  +G++RV   + AD+ V+NTC + + A +      
Sbjct: 5   KKVAFYTLGCKLNFSETSTIARSFKDEGFQRVEFSETADIYVINTCSVTDNADK------ 58

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R + +     K   +  V+  GC AQ + +E+      V++V+G    +++   L    
Sbjct: 59  -RFKTIVKQAQKVNENAFVIAVGCYAQLKPKELAAVD-GVDLVLGATEKFKITNYLNDLT 116

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
                 D       + +      G Y+      AFL +Q+GCD  CT+C +P  RGI  S
Sbjct: 117 KN----DFGEIHSCEIQEADFYVGSYSFGDRTRAFLKVQDGCDYKCTYCTIPLARGISRS 172

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK---CTFSDLLYSLSEIKGLV 261
            +L  V+D A+K+ +  + EI L G N+    GKG  G K    TF DL+ +L  ++G+ 
Sbjct: 173 DTLQNVLDNAKKISEKNIREIVLTGVNIG-DYGKGEFGNKKHEHTFLDLVKALDGVEGIE 231

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           RLR ++  P  + +  I      +  +P+ H+P+QSGS+ +LK+M RR+    Y   + R
Sbjct: 232 RLRISSIEPNLLKNETIDFVAQSNAFVPHFHIPLQSGSNEVLKNMRRRYMKELYVDRVAR 291

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I+   PD  I  D IVGFPGETD+ F  + + ++ +  +    F YS R  T  + M   
Sbjct: 292 IKETMPDACIGVDVIVGFPGETDEHFLESYNFLNDLDVSYLHVFTYSERENTVAAEMEGV 351

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           V   V+ +R   L+    +++ +F ++ +G+   VL E   KE G + G +     V   
Sbjct: 352 VPLKVRKKRSKMLRGLSAKKRRAFYESQLGKTKTVLFEGENKE-GYIHGFTENYVKVKTP 410

Query: 442 SKNHNIGDIIKVRITDVKISTLY 464
                +  + ++ +  +    L 
Sbjct: 411 WNPGLVNTLHEIELQKIDEDGLV 433


>gi|113867458|ref|YP_725947.1| hypothetical protein H16_A1444 [Ralstonia eutropha H16]
 gi|123033079|sp|Q0KBP2|RIMO_RALEH RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|113526234|emb|CAJ92579.1| conserved hypothetical protein [Ralstonia eutropha H16]
          Length = 443

 Score =  347 bits (890), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 114/461 (24%), Positives = 197/461 (42%), Gaps = 46/461 (9%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
             S GC   + DS ++     ++GY    + D ADL+V+NTC   ++A ++    +G   
Sbjct: 3   FVSLGCPKALVDSEQIITQLRAEGYAISGTYDGADLVVVNTCGFIDEAVQESLDAIGEAL 62

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQ----AEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
                         V+V GC+      A  + +    P V  V GP     + + +    
Sbjct: 63  TENGK---------VIVTGCLGAKKDAAGHDIVSSVHPKVLAVTGPHALGEVMQAVHTHL 113

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
                        D F  L     G        A+L I EGC+  C+FC++P  RG  +S
Sbjct: 114 P---------KPHDPFTDLVPA-AGIKLTPKHYAYLKISEGCNHRCSFCIIPSMRGDLVS 163

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYSLSE 256
           R +++V+ EA  L   GV E+ ++ Q+ +A+      R    +G   K   ++L+ +L E
Sbjct: 164 RPVAEVMLEAENLFKAGVKELLVISQDTSAYGVDVKYRTGFWNGRPLKTRMTELVAALGE 223

Query: 257 I----KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
           +       VRL Y   +P       + + G    ++PYL +P+Q     +LK M R   A
Sbjct: 224 LAAQYGAWVRLHYVYPYPHVDEIIPLMSQG---HVLPYLDVPLQHAHPDVLKRMKRPANA 280

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
            +    I   R + P++ I S FI GFPGET+ +F+  +D + +    +   F YSP  G
Sbjct: 281 EKTMDRIRAWREICPELTIRSTFIAGFPGETEAEFQTLLDFIAEAELDRVGCFAYSPVEG 340

Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVG 430
              +++   + + V+ ER     +   E         VGQ + VL+++  ++   G+   
Sbjct: 341 ATANDLPGALPDEVREERRARFMEVAEEVSARRLQRKVGQTLRVLVDEVNQDGGIGRSSA 400

Query: 431 RSPWLQSVVLNSKNH------NIGDIIKVRITDVKISTLYG 465
            +P +  +V  +           G+ + V+IT      L+G
Sbjct: 401 DAPEIDGLVYIAPPERHAQRYRAGEFVDVKITGADGHDLWG 441


>gi|222111666|ref|YP_002553930.1| ribosomal protein s12 methylthiotransferase [Acidovorax ebreus
           TPSY]
 gi|221731110|gb|ACM33930.1| MiaB-like tRNA modifying enzyme YliG [Acidovorax ebreus TPSY]
          Length = 463

 Score =  347 bits (890), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 129/482 (26%), Positives = 208/482 (43%), Gaps = 46/482 (9%)

Query: 14  VSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIR 73
           +SQ +     P+  FV S GC  N+ DS  +     ++GYE   + + ADL+++NTC   
Sbjct: 1   MSQALSPAKTPKIGFV-SLGCPKNLTDSELLLTQLSAEGYETSKTFEGADLVIVNTCGFI 59

Query: 74  EKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEE----ILRRSPIVNVVVG 129
           ++A ++    +G                 V+V GC+    GE     +    P V  V G
Sbjct: 60  DEAVKESLDTIGEALAENGK---------VIVTGCLGARAGETGGNLVKEVHPSVLAVTG 110

Query: 130 PQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKF 189
           P     + E++            D       E       G        A+L I EGC+  
Sbjct: 111 PHAAQEVMEVVHTHCPKPHDPFLDLVPGSFGE------AGIKLTPRHYAYLKISEGCNHR 164

Query: 190 CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE 243
           CTFC++P  RG  +SR +  V+ EA+ L + GV E+ ++ Q+ +A+      R    DG+
Sbjct: 165 CTFCIIPSMRGDLVSRPVGDVLKEAKALFEGGVKELLVISQDTSAYGVDVKYRTGFWDGK 224

Query: 244 --KCTFSDLLYSLSEI----KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQS 297
             K    +L+ +L E+       VRL Y   +P       + A G   +++PYL +P Q 
Sbjct: 225 PVKTRTLELVQTLGEMAATYGAWVRLHYVYPYPSVDDIIPLMAQG---LVLPYLDVPFQH 281

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
               +LK M R  +  +  + I R R   P+I I S FI GFPGET+++F+  +D V + 
Sbjct: 282 SHPDVLKRMKRPASGEKNLERILRWREACPEIVIRSTFIAGFPGETEEEFQHLLDFVREA 341

Query: 358 GYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVL 417
              +A  F YS   G   + +   +   ++ ER         E   +     VGQ ++VL
Sbjct: 342 QIDRAGCFAYSDVEGAAANELPGMLPMELREERRARFMAVAEEVSTAKLQRRVGQTMQVL 401

Query: 418 IEK-----HGKEKGKLVGRSPWLQSVVL------NSKNHNIGDIIKVRITDVKISTLYGE 466
           +++          G+    +P +  VV        SK + +GD +K RI   +   L G 
Sbjct: 402 VDQAVGLGKKGGVGRSYADAPEIDGVVHLLPPEKFSKTYKVGDFVKARIVGTQGHDLVGV 461

Query: 467 LV 468
            V
Sbjct: 462 PV 463


>gi|153940621|ref|YP_001391704.1| RNA modification protein [Clostridium botulinum F str. Langeland]
 gi|238065366|sp|A7GFZ4|RIMO_CLOBL RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|152936517|gb|ABS42015.1| RNA modification enzyme, MiaB family [Clostridium botulinum F str.
           Langeland]
 gi|295319732|gb|ADG00110.1| RNA modification enzyme, MiaB family [Clostridium botulinum F str.
           230613]
          Length = 445

 Score =  347 bits (890), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 129/449 (28%), Positives = 215/449 (47%), Gaps = 21/449 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +  + S GC  N  DS  M      +  E V +  +A +I++NTC   E A E+  + + 
Sbjct: 5   KVALVSLGCDKNRIDSELMLYKLNEE-AELVKNPKEAQVIIVNTCGFIETAKEESINTIL 63

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER-AR 144
           ++ + K    K     ++VV GC+ Q    E+    P +++++G   Y +L E ++   +
Sbjct: 64  QMASYK----KTHNCKVLVVTGCLTQRYKGELKELIPEMDIMLGVNDYDKLLESIKVFLK 119

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G++     YS     E   I+          TA++ I EGC+ FCT+C +P  RG   S
Sbjct: 120 SGEKSFYHKYSDTKINEGNRIL-----TTPTYTAYVRIAEGCNNFCTYCAIPRIRGKYRS 174

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R    ++ E   L   GV EI L+ Q+     G  + G+K    +LL  +S+++G+  +R
Sbjct: 175 RKKENILKEVENLAKQGVKEIILIAQDTTM-YGIDIYGKKV-LHELLRDISKVEGVKWIR 232

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
               +P +++  LI+   + D +  YL LP+Q  S+ +LK M R+ T      II ++R 
Sbjct: 233 LLYCYPEEITKELIEEIKNNDKVCKYLDLPIQQISNSVLKRMGRKTTKETIIDIIKKLRK 292

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
               I + +  IVGFPGET+ +F    + V  +   +   FKYS   GT  + M EQ+DE
Sbjct: 293 EIEGITLRTSLIVGFPGETEGEFSELKEFVSDVKLDKLGVFKYSKEEGTSAALMEEQIDE 352

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVVL 440
            +K +R   +    +      N   +G+I EV++E    ++    GR    SP +   + 
Sbjct: 353 EIKEKREEEIMILQQSISKDINKEKIGKIYEVIVEGT--KEDMYYGRNYEMSPEIDGEIY 410

Query: 441 --NSKNHNIGDIIKVRITDVKISTLYGEL 467
               +N  IGDIIKV++T      L G +
Sbjct: 411 FEKDENVKIGDIIKVKVTHSLEYDLIGVV 439


>gi|32266773|ref|NP_860805.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Helicobacter
           hepaticus ATCC 51449]
 gi|32262825|gb|AAP77871.1| conserved hypothetical protein [Helicobacter hepaticus ATCC 51449]
          Length = 443

 Score =  347 bits (890), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 147/430 (34%), Positives = 229/430 (53%), Gaps = 20/430 (4%)

Query: 44  MEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLV 103
           + ++   + Y   N +  ADLI++NTC +REK  +K++S +G     K +  K      +
Sbjct: 2   IAELRDKKHYTLTNDIKQADLILINTCSVREKPEKKLFSEIGAFAKEKKAGAK------I 55

Query: 104 VVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERL 163
            V GC A   GEEI++++P V+ V+G +   ++ ++LER     + V+ D   +D     
Sbjct: 56  GVCGCTASHLGEEIIKKAPSVDFVLGARNVSKITQVLERP----KAVEVDIDYDDSTYVF 111

Query: 164 SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVC 223
           +   G      G+ A L I  GCDK C++C+VP+TRG EIS     ++ EA+K + +G  
Sbjct: 112 ASSQGM-----GIKAHLNISIGCDKKCSYCIVPFTRGKEISVPKDLLISEAKKCVASGAK 166

Query: 224 EITLLGQNVNAWRGKG-LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHG 282
           E+ LLGQNVN +  +      K  F+ LL +LSEI GL R+R+T+ HP  M D  ++   
Sbjct: 167 ELLLLGQNVNNYGVRFSHSHPKTNFTQLLRALSEIDGLYRIRFTSPHPLHMDDEFLEEFA 226

Query: 283 DLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGE 342
              V+   +H+P+QSGS +ILK M R +    Y   I +++S+ P++ I +D IVGFP E
Sbjct: 227 SNPVIAKGIHIPLQSGSSQILKMMRRGYDKQWYLNRIAKLKSLVPNVGIGTDIIVGFPTE 286

Query: 343 TDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ--VDENVKAERLLCLQKKLRE 400
           ++ DF  TM+++  + +   +SF YSPR  T      +   V   V  ERL  LQ   +E
Sbjct: 287 SEQDFEDTMEVLSLVEFDTLYSFVYSPRPHTSAFEYDKSMLVSPEVAKERLARLQNLHKE 346

Query: 401 QQVSFNDACVGQIIEVLIEKHGKEKGK--LVGRSPWLQSVVLNSKNHNIGDIIKVRITDV 458
                    +G+I  VLIE H   +G+    GRS   + + +  K   IG I+KV IT  
Sbjct: 347 ILSKKAQLEIGRIHNVLIENHYNGEGQCWSEGRSSSNKLIKILDKKCEIGSIVKVEITHN 406

Query: 459 KISTLYGELV 468
           +   L G  +
Sbjct: 407 EGGGLMGRFI 416


>gi|145589109|ref|YP_001155706.1| MiaB-like tRNA modifying enzyme YliG [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
 gi|238066599|sp|A4SXC8|RIMO_POLSQ RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|145047515|gb|ABP34142.1| SSU ribosomal protein S12P methylthiotransferase [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
          Length = 452

 Score =  347 bits (890), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 122/467 (26%), Positives = 207/467 (44%), Gaps = 45/467 (9%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC   + DS  +     ++GYE       ADL+V+NTC   + A E+  S +G
Sbjct: 4   KIGFVSLGCPKALVDSELILTQLSAEGYETAKDYSGADLVVVNTCGFIDSAVEESLSAIG 63

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEE----ILRRSPIVNVVVGPQTYYRLPELLE 141
                            V+V GC+   +  +    IL   P V  V GP     + + + 
Sbjct: 64  EALAENGK---------VIVTGCLGARKNADGSDLILSIHPKVLAVTGPHATDEVMQAIH 114

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
                           D F  L +   G        A+L I EGC+  CTFC++P  RG 
Sbjct: 115 LHLP---------KPHDPFTDL-VPPAGVKLTPKHYAYLKISEGCNHRCTFCIIPSLRGD 164

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYS 253
            +SR + +V+ EA++L ++GV E+ ++ Q+ +A+      R    DG+  K    DL+ +
Sbjct: 165 LVSRPIGEVLLEAKRLFESGVKELLVVSQDTSAYGVDIQYRTGFWDGKPVKTRMFDLVNA 224

Query: 254 LSEI----KGLVRLRYTTSHPRDMSDCLIKAHGDLDV--LMPYLHLPVQSGSDRILKSMN 307
           L++I    +  VRL Y   +P       + A        ++PYL +P+Q     +LK M 
Sbjct: 225 LNQIAREHQAWVRLHYVYPYPHVDDILPLMAEFSEHGYGVLPYLDIPLQHAHPDVLKRMK 284

Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           R  +  +  + I   R   PD+ I S FI GFPGET+++F   ++ +++    +A  F Y
Sbjct: 285 RPASGEKNLERILAWREACPDLVIRSTFIAGFPGETEEEFEYLLNFLEEAQIDRAGCFAY 344

Query: 368 SPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-- 425
           SP  G   + +   V + V+ ER      K  +  +      +G+ ++VLI++  +    
Sbjct: 345 SPVEGAKANELDNPVPDAVREERRARFMAKAEDISIKRLAKKIGKRVQVLIDRVDESGGI 404

Query: 426 GKLVGRSPWLQSVV------LNSKNHNIGDIIKVRITDVKISTLYGE 466
           G+ +G +P +  +V        SK +  G+II+  +   +   L  E
Sbjct: 405 GRTIGDAPEIDGLVRVLPPTKPSKRYRTGEIIRATVISSQGHDLIAE 451


>gi|109069747|ref|XP_001098819.1| PREDICTED: CDK5 regulatory subunit associated protein 1-like 1
           isoform 3 [Macaca mulatta]
          Length = 576

 Score =  346 bits (889), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 115/460 (25%), Positives = 210/460 (45%), Gaps = 18/460 (3%)

Query: 11  AHMVSQIVDQCIVP-QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNT 69
               S   D  I   Q+ +++++GC  N  D   M     + GY+   +  DADL +LN+
Sbjct: 49  EEENSPPSDSTIPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNS 108

Query: 70  CHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG 129
           C ++  A +   + + + +              +V+AGCV QA+  +   +      ++G
Sbjct: 109 CTVKNPAEDHFRNSIKKAQEENKK---------IVLAGCVPQAQPRQDYLKG---LSIIG 156

Query: 130 PQTYYRLPELLERARFGKRVVDTDYSVED-KFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
            Q   R+ E++E    G  V       ++ +    + +D    RK  +   ++I  GC  
Sbjct: 157 VQQIDRVVEVVEETIKGHSVRLLGQKKDNGRRLGGARLDLPKIRKNPLIEIISINTGCLN 216

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS 248
            CT+C   + RG   S  + ++VD A++    GVCEI L  ++  A  G+ +     T  
Sbjct: 217 ACTYCKTKHARGNLASYPIDELVDRAKQSFQEGVCEIWLTSEDTGA-YGRDIGTNLPTLL 275

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
             L  +     ++RL  T           +    +   +  +LH+PVQS SD +L  M R
Sbjct: 276 WKLVEVIPEGAMLRLGMTNPPYILEHLEEMAKILNHPRVYAFLHIPVQSASDSVLMEMKR 335

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
            +   ++++++D ++   P I I++D I GFPGETD DF+ T+ LV++  +   F  ++ 
Sbjct: 336 EYCVADFKRVVDFLKEKVPGITIATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFY 395

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL 428
           PR GTP + M EQV   VK +R   L         S  +  +G+  +VL+ +   +    
Sbjct: 396 PRPGTPAAKM-EQVPAQVKKQRTKDLSWVF--HSYSPYNHKIGERQQVLVTEESFDSKFY 452

Query: 429 VGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           V  + + + V++      +G +++V I +     + G+ V
Sbjct: 453 VAHNRFYEQVLVPKNPAFMGKMVEVDICESGKHFMKGQPV 492


>gi|91094359|ref|XP_970283.1| PREDICTED: similar to GA19679-PA [Tribolium castaneum]
          Length = 548

 Score =  346 bits (889), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 113/448 (25%), Positives = 207/448 (46%), Gaps = 23/448 (5%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           Q+ ++K++GC  N  D+  M     + GY+   +  +ADL +LN+C ++  A +   + +
Sbjct: 71  QKIYIKTWGCAHNSSDTEYMAGQLTAYGYKLTENKKEADLWLLNSCTVKNPAEDHFRNQI 130

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
              + L            +VVAGCV Q   +    +      ++G Q   R+ E++E   
Sbjct: 131 QEAKEL---------GKYIVVAGCVPQGAPKASFIQG---LSIIGVQQIDRVVEVVEETL 178

Query: 145 FGKRVVDTDYSVED-KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            G  V       E  K    + +     R+  +   + I  GC   CT+C   + RG   
Sbjct: 179 KGNTVKLLGTKKEQGKKIGGASLLLPKVRRNPLIEIIAINTGCLNQCTYCKTKHARGELG 238

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE-IKGLVR 262
           S    ++V+ A++  + GV EI L  ++     G+ +     +  +LL+ L E I    R
Sbjct: 239 SYPPEEIVERAKQAFEEGVVEIWLTSEDTGT-YGRDI---GTSLPELLWKLVEVIPEGCR 294

Query: 263 LRYTTSHPRDMSDCLIKA--HGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
           LR   ++P  + + L +     +   +  +LH+PVQSGSD++L  M R +   ++  ++D
Sbjct: 295 LRLGMTNPPYILEHLSEVAKIMNHPRVYSFLHVPVQSGSDQVLSDMKREYFRKDFEHVVD 354

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
            ++S  P + I++D I GFP ET+ DF  T+ L +K  +   F  ++ PR GTP + +L 
Sbjct: 355 FLQSQIPGMTIATDIICGFPTETEKDFEDTLSLCEKYKFPSLFINQFFPRPGTPAA-LLP 413

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440
           ++       R   L            D  VG++ EVL+ +   +K   VG + + + V++
Sbjct: 414 RIPAQEVKGRTKRLTDLFY--SYQPYDKKVGEVQEVLVTEVSHDKKHYVGHNKFYEQVLV 471

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 +G ++ V+I      ++ GE +
Sbjct: 472 PKDEKYMGKLVTVKIVSATKFSMTGEPL 499


>gi|325103664|ref|YP_004273318.1| MiaB-like tRNA modifying enzyme [Pedobacter saltans DSM 12145]
 gi|324972512|gb|ADY51496.1| MiaB-like tRNA modifying enzyme [Pedobacter saltans DSM 12145]
          Length = 439

 Score =  346 bits (889), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 120/432 (27%), Positives = 213/432 (49%), Gaps = 14/432 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + +     + GC++N  ++  +   F + G++ V   D AD+ V+NTC + E A +K   
Sbjct: 1   MDKSVAFYTLGCKLNYSETSTIGRQFQNAGFKMVEFTDKADVYVINTCSVTENADKKCRK 60

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +          +K   +  + + GC AQ +  EI      V+VV+G    ++L E ++ 
Sbjct: 61  VVKEA-------LKHSPNAYIAIVGCYAQLKPTEI-SEIEGVDVVLGAAEKFQLLEHIQD 112

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
                +    +  +++  E ++     Y+       FL +Q+GCD  CTFC +P  RG  
Sbjct: 113 LTKKPKAEIFNKPIKETNEFVA----SYSFGDRTRTFLKVQDGCDYSCTFCTIPLARGES 168

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            S ++  +V +A+++  +GV EI L G N+  + G      +  F DL+ +L E++G+ R
Sbjct: 169 RSDTIDSIVAQAKEIAKSGVKEIVLTGVNIGDF-GIRNGKREDKFFDLVKALDEVEGIDR 227

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R ++  P  +S  +I+        +P+ H+P+QSGS++IL  M RR+    Y   +  I
Sbjct: 228 IRISSIEPNLLSTEIIEFVSKSKRFVPHFHIPLQSGSNKILGLMRRRYRRELYVDRVREI 287

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           + V PD  I  D IVGFPGET +DF  T + ++ +  +    F YS R  TP + M   V
Sbjct: 288 KRVMPDCCIGVDVIVGFPGETREDFIDTYNFLNDLDISYLHVFTYSERENTPAAEMEGSV 347

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
             + +A+R   L     +++ +F +  +G++ E+L E   KE G + G S     V +  
Sbjct: 348 PGSQRADRSKMLHILSDKKRRAFYETQIGKVGEILFEGDLKE-GFMHGFSKNYVKVKIQY 406

Query: 443 KNHNIGDIIKVR 454
               + +I  V+
Sbjct: 407 DPLLVNEIKSVK 418


>gi|153010948|ref|YP_001372162.1| MiaB-like tRNA modifying enzyme YliG [Ochrobactrum anthropi ATCC
           49188]
 gi|238066603|sp|A6X529|RIMO_OCHA4 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|151562836|gb|ABS16333.1| MiaB-like tRNA modifying enzyme YliG [Ochrobactrum anthropi ATCC
           49188]
          Length = 437

 Score =  346 bits (889), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 136/459 (29%), Positives = 211/459 (45%), Gaps = 42/459 (9%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R    S GC   + DS R+     S+GYE     D ADL+++NTC   + A ++    +G
Sbjct: 5   RVSFVSLGCPKALVDSERIITSLRSEGYEISRKHDGADLVIVNTCGFLDSARDESLDAIG 64

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                         +  V+V GC+  AE + I  R P V  + GPQ Y  +   +  A  
Sbjct: 65  LA---------LNENGKVIVTGCLG-AEPDVIRERHPNVLAITGPQAYESVMSAVHEA-- 112

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                       D F  L +   G        A+L I EGC   C+FC++P  RG  +SR
Sbjct: 113 -------VPPAHDPFVDL-VPPQGVKLTPRHYAYLKISEGCSNRCSFCIIPALRGDLVSR 164

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE---------KCTFSDLLYSLSE 256
            +  V+ EA KL++ GV EI ++ Q+ +A  G  +  +         +  F DL   L +
Sbjct: 165 PIDSVLREAEKLVNAGVKEILVISQDTSA-YGLDIKYQEAMWQDRTVRTKFLDLSRELGD 223

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           +   VR+ Y   +P       + A G    ++PYL +P Q  S  +LK+M R     +  
Sbjct: 224 MGVWVRMHYVYPYPHVDEVIPLMAEG---KILPYLDIPFQHASPAVLKNMRRPAHQEKTS 280

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
           + I   R   PD+A+ S FIVG+PGET++DF   +D +D+    +A  FKY P  G   +
Sbjct: 281 RRIQAWRETCPDLAVRSTFIVGYPGETEEDFEILLDWLDEAKIERAGCFKYEPVKGAKAN 340

Query: 377 NM-LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS--- 432
           ++ LEQV E +K  R      K ++   +     VG+ + V+I++     GK  GR+   
Sbjct: 341 DLGLEQVPEEIKEARWHRFMAKQQQISTNLLKKKVGKRLPVIIDEANGTIGK--GRTRYD 398

Query: 433 -PWLQS-VVLNS-KNHNIGDIIKVRITDVKISTLYGELV 468
            P +   V + S +   +GDI+ V+I       L+G  V
Sbjct: 399 APEIDGSVHIQSRRPLRVGDIVTVKIEASDAYDLHGIAV 437


>gi|18978284|ref|NP_579641.1| hypothetical protein PF1912 [Pyrococcus furiosus DSM 3638]
 gi|18894107|gb|AAL82036.1| hypothetical protein PF1912 [Pyrococcus furiosus DSM 3638]
          Length = 425

 Score =  346 bits (889), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 116/446 (26%), Positives = 217/446 (48%), Gaps = 27/446 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + ++++YGC  N  D   M  +  S GYE V   ++AD++V+N+C +++    K+   + 
Sbjct: 3   KVYIENYGCARNRADGEIMAGLLLSSGYEIVEGEENADIVVVNSCAVKDPTEVKIARRIR 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            + +             V+V GC+     + I      V+ V+G ++  R+ + +E A  
Sbjct: 63  ELLD---------RGKKVIVTGCLPHVNPDAI---DERVSAVLGVKSIDRIVQAVEYALR 110

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G++++      +   ++L   D      RGV   L I EGC   CT+C     RG+  S 
Sbjct: 111 GEKLISVPDWRKRNLDKL---DFPRLSPRGVHFILPIAEGCLNGCTYCATRSARGVLKSY 167

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           S  ++V+  +  I  G  EI L  ++     G  +       + LL  ++ I+G  R+R 
Sbjct: 168 SPEKIVEWVKWAIRQGYKEIWLSAEDTG-CYGFDI---GTNLAKLLDEITAIEGEFRIRV 223

Query: 266 TTSHPRD---MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
              +P       D LI+A+ D + +  +LHLPVQSG + IL+ M R +T  E+ +I++  
Sbjct: 224 GMMNPNHVLKFLDELIEAYKD-EKVYKFLHLPVQSGDNEILRRMGRTYTVEEFEEIVNAF 282

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R   PD+ + +D IVGFPGE+++ F+ +++L+ +I   +    +YSPR GT  +   +Q+
Sbjct: 283 RREFPDLNLHTDIIVGFPGESEEAFQRSLELIKRIKPDKVNVSRYSPRPGTIAAKW-KQL 341

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
              V  ER   + +   +     N   VG+ +++L+   GK+ G +   +   + +++  
Sbjct: 342 PGWVVKERSRIMHRVRLQISYEINQRYVGRKVDILVHGEGKK-GNVDAVTMNYKHIIIPR 400

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
                G+  + ++     + L GE+V
Sbjct: 401 GEK--GEFARAKVNGATSTYLLGEIV 424


>gi|293397289|ref|ZP_06641561.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Serratia odorifera DSM
           4582]
 gi|291420207|gb|EFE93464.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Serratia odorifera DSM
           4582]
          Length = 365

 Score =  346 bits (889), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 140/321 (43%), Positives = 207/321 (64%), Gaps = 6/321 (1%)

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           +VD  +   +KF+RL        R  G TA+++I EGC+K+CTFCVVPYTRG E+SR   
Sbjct: 12  IVDISFPEIEKFDRLP-----EPRAEGPTAYVSIMEGCNKYCTFCVVPYTRGEEVSRPSD 66

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
            V+ E  +L   GV E+ LLGQNVNA+RG   DG  C+F++LL  ++ I G+ R+R+TTS
Sbjct: 67  DVLFEIAQLAAQGVREVNLLGQNVNAYRGATYDGGVCSFAELLRLVAAIDGIDRIRFTTS 126

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
           HP + +D +I  + D   L+ +LHLPVQSGSDRIL  M R HTA EY+ II ++R  RP+
Sbjct: 127 HPIEFTDDIIAVYEDTPELVSFLHLPVQSGSDRILTMMKRAHTALEYKAIIRKLRKARPN 186

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           I ISSDFI+GFPGE+  DF  TM+L+ ++ +  +FSF YS R GTP ++M++ V E+ K 
Sbjct: 187 IQISSDFIIGFPGESQADFEQTMNLIAEVNFDTSFSFIYSSRPGTPAADMVDDVSEDEKK 246

Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNSKNHNI 447
           +RL  LQ+++ +Q + F+   +G +  +L+E   ++   +L GR+   + V        I
Sbjct: 247 QRLYILQERILQQAMRFSRQMLGTVQRILVEGTSRKSVMELAGRTECNRMVNFEGTPDMI 306

Query: 448 GDIIKVRITDVKISTLYGELV 468
           G  + V IT+V  ++L G ++
Sbjct: 307 GQFVDVEITEVLTNSLRGLVI 327


>gi|332295064|ref|YP_004436987.1| RNA modification enzyme, MiaB family [Thermodesulfobium narugense
           DSM 14796]
 gi|332178167|gb|AEE13856.1| RNA modification enzyme, MiaB family [Thermodesulfobium narugense
           DSM 14796]
          Length = 448

 Score =  346 bits (889), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 146/448 (32%), Positives = 236/448 (52%), Gaps = 15/448 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           +P+ FFV+  GCQMN Y+      +F   G    ++ +DA++IVL +C +RE A  K  +
Sbjct: 14  LPKTFFVEVLGCQMNKYEGEVFTSLFLKHGLLP-SNPEDAEVIVLLSCAVRENAENKALA 72

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +G+    K    KE       + GC A+  GE+IL R P ++V+  P +   +  +++ 
Sbjct: 73  RIGKYLKYK----KERKLKCFALGGCQAKIWGEKILERFPKIDVLFSPASLEDVETIVKH 128

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
                  ++   S+ +  + + + +  Y+     +A+L I  GC++FCT+C VPY RG E
Sbjct: 129 IIERSNYINLKESITNP-DCIPVPENQYDF---PSAYLPISCGCNQFCTYCAVPYGRGRE 184

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SRSL  +++E  +    G  EI  LGQN ++  GK +     +  +LL   ++    + 
Sbjct: 185 KSRSLESILNEVSQRSKQGFKEIIYLGQNCDS-YGKDI---GSSLKELLELSAKKFPNLW 240

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
            +  TS+P  ++  L++     D L  Y  +P+QSGSDRILK MNR+++  +YR  I+ I
Sbjct: 241 FKCITSYPSMITKELLETIASYDNLCNYFSIPMQSGSDRILKLMNRKYSVEQYRNSINMI 300

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R + PD  I+SDFIVGFPGET+ DF+ T++ +++  Y       YS R  TP S   + +
Sbjct: 301 REIIPDAVITSDFIVGFPGETEKDFQDTINAIEEFKYDTVNIAIYSKRPFTPASKFEDNI 360

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLN 441
               KA+R   L KK  E  ++F    + ++++VLI     K+KG +  R+   Q V+  
Sbjct: 361 SYQEKAQRANILIKKAEEISLNFRKQYLNEVLDVLIRGEDKKKKGFISSRTKGHQIVIFK 420

Query: 442 SKNHNI-GDIIKVRITDVKISTLYGELV 468
            +N    G   KV IT V    + GE V
Sbjct: 421 KRNKLDQGLKTKVYITSVLSHYMMGEEV 448


>gi|168180715|ref|ZP_02615379.1| RNA modification enzyme, MiaB family [Clostridium botulinum NCTC
           2916]
 gi|226949759|ref|YP_002804850.1| RNA modification enzyme, MiaB family [Clostridium botulinum A2 str.
           Kyoto]
 gi|182668451|gb|EDT80430.1| RNA modification enzyme, MiaB family [Clostridium botulinum NCTC
           2916]
 gi|226843731|gb|ACO86397.1| RNA modification enzyme, MiaB family [Clostridium botulinum A2 str.
           Kyoto]
          Length = 445

 Score =  346 bits (889), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 129/449 (28%), Positives = 215/449 (47%), Gaps = 21/449 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +  + S GC  N  DS  M      +  E V +  +A +I++NTC   E A E+  + + 
Sbjct: 5   KVALVSLGCDKNRIDSELMLYKLNEE-AELVKNPKEAQVIIVNTCGFIETAKEESINTIL 63

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER-AR 144
           ++ + K    K     ++VV GC+ Q    E+    P +++++G   Y +L E ++   +
Sbjct: 64  QMASYK----KTHNCKVLVVTGCLTQRYKGELKELIPEMDIMLGVNDYDKLLESIKVFLK 119

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G++     YS     E   I+          TA++ I EGC+ FCT+C +P  RG   S
Sbjct: 120 SGEKSFYHKYSDTKINEGNRIL-----TTPTYTAYVRIAEGCNNFCTYCAIPRIRGKYRS 174

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R    ++ E   L   GV EI L+ Q+     G  + G+K    +LL  +S+++G+  +R
Sbjct: 175 RKKENILKEVENLAKQGVKEIILIAQDTTM-YGIDIYGKKV-LHELLRDISKVEGVKWIR 232

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
               +P +++  LI+   + D +  YL LP+Q  S+ +LK M R+ T      II ++R 
Sbjct: 233 LLYCYPEEITKELIEEIKNNDKVCKYLDLPIQQISNSVLKRMGRKTTKETIINIIKKLRK 292

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
               I + +  IVGFPGET+ +F    + V  +   +   FKYS   GT  + M EQ+DE
Sbjct: 293 EIEGITLRTSLIVGFPGETEGEFSELKEFVSDVKLDKLGVFKYSKEEGTSAALMKEQIDE 352

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVVL 440
            +K +R   +    +      N   +G+I EV++E    ++    GR    SP +   + 
Sbjct: 353 EIKEKREEEIMILQQSISKDINKEKIGKIYEVIVEGT--KEDMYYGRNYEMSPEIDGEIY 410

Query: 441 --NSKNHNIGDIIKVRITDVKISTLYGEL 467
               +N  IGDIIKV++T      L G +
Sbjct: 411 FEKDENVKIGDIIKVKVTHSLEYDLIGVV 439


>gi|270014918|gb|EFA11366.1| hypothetical protein TcasGA2_TC011523 [Tribolium castaneum]
          Length = 545

 Score =  346 bits (889), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 113/448 (25%), Positives = 207/448 (46%), Gaps = 23/448 (5%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           Q+ ++K++GC  N  D+  M     + GY+   +  +ADL +LN+C ++  A +   + +
Sbjct: 68  QKIYIKTWGCAHNSSDTEYMAGQLTAYGYKLTENKKEADLWLLNSCTVKNPAEDHFRNQI 127

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
              + L            +VVAGCV Q   +    +      ++G Q   R+ E++E   
Sbjct: 128 QEAKEL---------GKYIVVAGCVPQGAPKASFIQG---LSIIGVQQIDRVVEVVEETL 175

Query: 145 FGKRVVDTDYSVED-KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            G  V       E  K    + +     R+  +   + I  GC   CT+C   + RG   
Sbjct: 176 KGNTVKLLGTKKEQGKKIGGASLLLPKVRRNPLIEIIAINTGCLNQCTYCKTKHARGELG 235

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE-IKGLVR 262
           S    ++V+ A++  + GV EI L  ++     G+ +     +  +LL+ L E I    R
Sbjct: 236 SYPPEEIVERAKQAFEEGVVEIWLTSEDTGT-YGRDI---GTSLPELLWKLVEVIPEGCR 291

Query: 263 LRYTTSHPRDMSDCLIKA--HGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
           LR   ++P  + + L +     +   +  +LH+PVQSGSD++L  M R +   ++  ++D
Sbjct: 292 LRLGMTNPPYILEHLSEVAKIMNHPRVYSFLHVPVQSGSDQVLSDMKREYFRKDFEHVVD 351

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
            ++S  P + I++D I GFP ET+ DF  T+ L +K  +   F  ++ PR GTP + +L 
Sbjct: 352 FLQSQIPGMTIATDIICGFPTETEKDFEDTLSLCEKYKFPSLFINQFFPRPGTPAA-LLP 410

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440
           ++       R   L            D  VG++ EVL+ +   +K   VG + + + V++
Sbjct: 411 RIPAQEVKGRTKRLTDLFY--SYQPYDKKVGEVQEVLVTEVSHDKKHYVGHNKFYEQVLV 468

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 +G ++ V+I      ++ GE +
Sbjct: 469 PKDEKYMGKLVTVKIVSATKFSMTGEPL 496


>gi|85860140|ref|YP_462342.1| tRNA 2-methylthioadenosine synthase -like protein [Syntrophus
           aciditrophicus SB]
 gi|85723231|gb|ABC78174.1| tRNA 2-methylthioadenosine synthase -like protein [Syntrophus
           aciditrophicus SB]
          Length = 451

 Score =  346 bits (889), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 117/447 (26%), Positives = 218/447 (48%), Gaps = 17/447 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +  + + GC++N Y+S  + +    +GY  V     AD  ++NTC +  +   +    + 
Sbjct: 18  KAAIATLGCKVNQYESEGLGEALTRRGYTMVPFSSVADCYIINTCTVTARTNYQSRQIIR 77

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           +        I+   + ++VV GC AQ    EI    P V ++ G     ++P+L+ R   
Sbjct: 78  KA-------IRNNPEAVIVVTGCYAQTAPAEIAG-IPGVTLIAGHAEKDQIPDLIARLLK 129

Query: 146 GK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            +  +   D     +F  L+        K    AFL IQ+GC+ +C++C++P  RG   S
Sbjct: 130 ERLEIRVGDIGQTRQFSSLAATR----FKDHTRAFLKIQDGCNAWCSYCIIPSARGRSRS 185

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
            +   V+++   +   G  E+ L G ++ A  G+    +  +  DLL  + E   + RLR
Sbjct: 186 LAEGSVLEQLAHMGRTGYREVVLTGIHLGA-YGQDFSPQ-SSLVDLLRKVEEQHPVERLR 243

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
            ++  P ++SD  I       +L P+LH+P+QSG D IL  M R +T   ++ +++++  
Sbjct: 244 LSSIEPTEISDDFIALLRQSALLCPHLHIPLQSGDDSILTRMKRHYTTSFFKDLLEKLCR 303

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             PD+AI  D I GFPGE +  F  T++L++ +  A    F YS R GTP + M +QV  
Sbjct: 304 AIPDLAIGIDVIAGFPGEGEAAFERTVELIESLPVAYLHVFPYSVRPGTPAAAMPDQVSP 363

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSVVL-NS 442
           + K +R   L+     ++ +F     G+ + VL+E+   +  G   G S     +++ N+
Sbjct: 364 DEKKKRAEILRTLGTRKREAFARRFHGRSLRVLVEERRERSSGLRKGFSGNYLPILMTNA 423

Query: 443 KNHNIGDIIKVRITDVKISTLYGELVV 469
               +  +++V+I ++  + + G ++ 
Sbjct: 424 DASQVNQLVQVQIENIDGTRISGRIMT 450


>gi|312796118|ref|YP_004029040.1| tRNA 2-methylthioadenosine synthase homolog [Burkholderia
           rhizoxinica HKI 454]
 gi|312167893|emb|CBW74896.1| tRNA 2-methylthioadenosine synthase homolog [Burkholderia
           rhizoxinica HKI 454]
          Length = 478

 Score =  346 bits (888), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 118/469 (25%), Positives = 196/469 (41%), Gaps = 48/469 (10%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +  + S GC   + DS ++     ++GY+   + D ADL+V+NTC   ++A ++    +G
Sbjct: 31  KVGMVSLGCPKALVDSEQIITQLRAEGYQICGTYDGADLVVVNTCGFIDEAVQESLDAIG 90

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEE----ILRRSPIVNVVVGPQTYYRLPELLE 141
                            V+V GC+   +       I +  P V  V GP     + + + 
Sbjct: 91  EALAENGK---------VIVTGCLGAKKNASGTGLIEQVHPKVLAVTGPHALGEVMQAVH 141

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
                           D F  L     G        A+L I EGC+  CTFC++P  RG 
Sbjct: 142 AHLP---------KPHDPFVDLVPA-AGIKLTPKHYAYLKISEGCNHRCTFCIIPSMRGD 191

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGEKCTFSD------ 249
            +SR +++V+ EA  L  +GV E+ ++ Q+ +A+      R    +G             
Sbjct: 192 LVSRPVAEVMLEAENLFKSGVKELLVISQDTSAYGVDVKFRTGFWNGRPLRTRMNELAAA 251

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLD-VLMPYLHLPVQSGSDRILKSMNR 308
           L    ++    VRL Y   +P       + A G     L+PYL +P+Q     +L+ M R
Sbjct: 252 LGELAAQYGAWVRLHYVYPYPSVDEIVPLMADGPYRGHLLPYLDVPLQHADPEVLRRMKR 311

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
              A +  + +   R   PD+ I S FIVGFPGET+  F   +D + +    +   F YS
Sbjct: 312 PANAEKTLERVRAWREACPDLTIRSTFIVGFPGETEAQFEVLLDFIREAQLDRVGCFAYS 371

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL 428
           P  G   + +   + ++V+  R                   VG+ ++VLI++   + G  
Sbjct: 372 PVEGASANELDGTLPDDVREARRARFMAVAESVSAERLKRKVGKTLKVLIDEVNADGG-- 429

Query: 429 VGRS----PWLQSVVLNSK------NHNIGDIIKVRITDVKISTLYGEL 467
           +GRS    P +  VV  S        + +GD + V IT      L+G++
Sbjct: 430 IGRSAADAPEIDGVVYVSPASKASRRYKVGDFVNVSITGADGHDLWGDV 478


>gi|227826584|ref|YP_002828363.1| RNA modification enzyme, MiaB family [Sulfolobus islandicus
           M.14.25]
 gi|227829226|ref|YP_002831005.1| RNA modification enzyme, MiaB family [Sulfolobus islandicus
           L.S.2.15]
 gi|229577995|ref|YP_002836393.1| RNA modification enzyme, MiaB family [Sulfolobus islandicus
           Y.G.57.14]
 gi|229583207|ref|YP_002841606.1| RNA modification enzyme, MiaB family [Sulfolobus islandicus
           Y.N.15.51]
 gi|229583748|ref|YP_002842249.1| RNA modification enzyme, MiaB family [Sulfolobus islandicus
           M.16.27]
 gi|238618670|ref|YP_002913495.1| RNA modification enzyme, MiaB family [Sulfolobus islandicus M.16.4]
 gi|284996581|ref|YP_003418348.1| RNA modification enzyme, MiaB family [Sulfolobus islandicus
           L.D.8.5]
 gi|227455673|gb|ACP34360.1| RNA modification enzyme, MiaB family [Sulfolobus islandicus
           L.S.2.15]
 gi|227458379|gb|ACP37065.1| RNA modification enzyme, MiaB family [Sulfolobus islandicus
           M.14.25]
 gi|228008709|gb|ACP44471.1| RNA modification enzyme, MiaB family [Sulfolobus islandicus
           Y.G.57.14]
 gi|228013923|gb|ACP49684.1| RNA modification enzyme, MiaB family [Sulfolobus islandicus
           Y.N.15.51]
 gi|228018797|gb|ACP54204.1| RNA modification enzyme, MiaB family [Sulfolobus islandicus
           M.16.27]
 gi|238379739|gb|ACR40827.1| RNA modification enzyme, MiaB family [Sulfolobus islandicus M.16.4]
 gi|284444476|gb|ADB85978.1| RNA modification enzyme, MiaB family [Sulfolobus islandicus
           L.D.8.5]
          Length = 421

 Score =  346 bits (888), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 130/444 (29%), Positives = 225/444 (50%), Gaps = 30/444 (6%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +  +V++YGC +N  D+  M  +  S+GY  V + ++AD+I+LNTC +R +  E++   +
Sbjct: 2   KTIYVETYGCALNRADTYVMMTLLKSEGYNFVENPENADIIILNTCAVRLETEERMKQRI 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             +  L            +VVAGC++ AE   +L  +P  +++ GPQ+  R+ +++ ++ 
Sbjct: 62  KELNTLSKK---------LVVAGCMSSAEPATVLSIAPNASLI-GPQSVERIIDVI-KSE 110

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
             K V++ D ++                  G  A + + +GC   C+FC+    R    S
Sbjct: 111 ERKIVLEGDRALITP-----------RTFDGKIAIIPVADGCAGNCSFCITKLARRKLRS 159

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
             L ++V+ AR  +  G  EI L GQ+  A  G  L G   +  D++  ++EI G   +R
Sbjct: 160 YPLREIVNAARDAVKAGAKEIELTGQDTAA-YGLDL-GGSISLVDVVNKVTEIDGDFMIR 217

Query: 265 YTTSHPRDMSDC---LIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
                P         LI+   +   +  ++HLPVQSG DR+LK MNR++T  EY++++  
Sbjct: 218 IGMMTPEQAMRIIDNLIEVMRN-PKVYKFIHLPVQSGDDRVLKLMNRKYTIDEYKELVSE 276

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           IRS  P   I++D I+G PGE +D F  T+ L+ ++ + +     YS R  T  ++M  Q
Sbjct: 277 IRSKIPFANITTDIIIGHPGEDEDAFNNTLLLMKELRFERIHLAMYSIRPNTRSASMP-Q 335

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           V ++VK +R+    K   +  +S +   VG    V+  + G++ G +VGR      VV+ 
Sbjct: 336 VPDSVKKKRIQIANKLYEDIALSIHLEYVGSTSRVITTELGRK-GSVVGRLMNYIPVVIR 394

Query: 442 SKNHNIGDIIKVRITDVKISTLYG 465
           S+N  +G    V+IT+     L G
Sbjct: 395 SENVELGKWYNVKITEASFYDLRG 418


>gi|194693708|gb|ACF80938.1| unknown [Zea mays]
          Length = 626

 Score =  346 bits (888), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 124/462 (26%), Positives = 214/462 (46%), Gaps = 24/462 (5%)

Query: 9   GVAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLN 68
            VA    Q        Q  +VK++GC  N  DS  M     + GY      + ADL ++N
Sbjct: 39  RVAQAPPQPEAGIPGTQTIYVKTFGCSHNQSDSEYMSGQLSAFGYAITEDPEGADLWLIN 98

Query: 69  TCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVV 128
           TC ++  +   + + + + +N             +VVAGCV Q  G + L+    ++++ 
Sbjct: 99  TCTVKNPSQSAMTTLISKCKNANKP---------LVVAGCVPQ--GSQGLKELEGISII- 146

Query: 129 GPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
           G Q   R+ E++E    G  V             L  +D    RK      L I  GC  
Sbjct: 147 GVQQIDRVVEVVEETLKGHEVRLLSRKT------LPSLDLPKVRKNKFIEILPINVGCLG 200

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS 248
            CT+C   + RG   S ++  +VD  + ++  GV EI L  ++  A  G+ +        
Sbjct: 201 ACTYCKTKHARGHLGSYTIDSLVDRVKTVVSEGVREIWLSSEDTGA-YGRDIGTNLPNLL 259

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCL--IKAHGDLDVLMPYLHLPVQSGSDRILKSM 306
           + + +   +     LR   ++P  + + L  I A      +  +LH+PVQSGSD +LK+M
Sbjct: 260 NAIVAELPVDQSTMLRIGMTNPPFILEHLKEIAAVLCHPCVYSFLHVPVQSGSDSVLKAM 319

Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
           NR +T  E+R+++D +  + P + I++D I GFPGETD+DF  T++LV +  + Q    +
Sbjct: 320 NREYTVGEFRKVVDTLCELVPGMQIATDIICGFPGETDEDFSETVNLVKEYQFPQVHISQ 379

Query: 367 YSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG 426
           + PR GTP + M ++V  N   +R   L      +  S      G++ ++ I +   +  
Sbjct: 380 FYPRPGTPAARM-KKVPSNEVKKRSRELTSVF--ESFSPYQGMEGKVEKIWITEIASDGV 436

Query: 427 KLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            LVG +     V++ + +  +G     +IT V   +++G +V
Sbjct: 437 HLVGHTKGYIQVLVTAPDSMLGTSADAKITSVGRWSVFGVVV 478


>gi|134095120|ref|YP_001100195.1| ribosomal protein S12 methylthiotransferase [Herminiimonas
           arsenicoxydans]
 gi|238066316|sp|A4G6D4|RIMO_HERAR RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|133739023|emb|CAL62071.1| Conserved hypothetical protein [Herminiimonas arsenicoxydans]
          Length = 454

 Score =  346 bits (888), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 121/476 (25%), Positives = 207/476 (43%), Gaps = 49/476 (10%)

Query: 17  IVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA 76
           + +      +    S GC   + DS ++     ++GY+   S D ADL+++NTC   + A
Sbjct: 1   MTNAPPATPKIGFVSLGCPKALVDSEQILTQLRAEGYDTAKSYDGADLVIVNTCGFIDAA 60

Query: 77  AEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVA---QAEGEEILRR-SPIVNVVVGPQT 132
            ++    +G              +  V+V GC+     A G++I+++  P V  V GP  
Sbjct: 61  VQESLDAIGEA---------LHENGRVIVTGCLGAKKDANGDDIIQKVHPKVLAVTGPHA 111

Query: 133 YYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTF 192
              + + +            D           +   G        A+L I EGC+  C+F
Sbjct: 112 LGEVMDAVHLHMPKPHAPFLDL----------LPPQGIKLTPKHFAYLKISEGCNHRCSF 161

Query: 193 CVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--K 244
           C++P  RG  +SR ++ V+ EA  L   GV E+ ++ Q+ +A+      R    +G+  K
Sbjct: 162 CIIPSMRGDLVSRPIADVMMEAENLFKAGVKELLVISQDTSAYGVDIKFRMGFWNGKPVK 221

Query: 245 CTFSDLLYSLSEI----KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300
              + L+ +L E+       VRL Y   +P   +   + A G    ++PYL +P+Q    
Sbjct: 222 THMTQLVEALGELAAPYGAWVRLHYVYPYPHVDAIIPMMAEG---KILPYLDVPLQHAHP 278

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
            +LK M R  +  +  + I   R++ PD+ I S FI GFPGET+ +F   +D + +    
Sbjct: 279 DVLKRMKRPASGEKNIERIQAWRAMCPDLTIRSTFIAGFPGETEAEFEYLLDFLKEAEID 338

Query: 361 QAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
           +   F YSP  G   +++   V E V+ ER   +     E       A VG+ + VLI++
Sbjct: 339 RLGCFAYSPVEGATANDLPNAVPEEVREERRGRVMLLQEEISKKRLQAKVGKTMRVLIDE 398

Query: 421 HGKEKGKLVGRS----PWLQSVVLNSKN------HNIGDIIKVRITDVKISTLYGE 466
             +  G    RS    P +  VV           + +G+ + V+IT      L+ E
Sbjct: 399 VNR-TGAATARSGADAPEIDGVVYVKAPYEPHIKYKVGEFVDVKITGADAHDLWAE 453


>gi|256157741|ref|ZP_05455659.1| MiaB-like tRNA modifying enzyme YliG [Brucella ceti M490/95/1]
 gi|256253289|ref|ZP_05458825.1| MiaB-like tRNA modifying enzyme YliG [Brucella ceti B1/94]
 gi|261220402|ref|ZP_05934683.1| conserved hypothetical protein [Brucella ceti B1/94]
 gi|265996247|ref|ZP_06108804.1| conserved hypothetical protein [Brucella ceti M490/95/1]
 gi|260918986|gb|EEX85639.1| conserved hypothetical protein [Brucella ceti B1/94]
 gi|262550544|gb|EEZ06705.1| conserved hypothetical protein [Brucella ceti M490/95/1]
          Length = 437

 Score =  346 bits (888), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 134/457 (29%), Positives = 212/457 (46%), Gaps = 38/457 (8%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R    S GC   + DS R+     S+GYE     D ADL+++NTC   + A ++    +G
Sbjct: 5   RVSFVSLGCPKALVDSERIITGLRSEGYEISRKHDGADLVIVNTCGFLDSARDESLEAIG 64

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                         +  V+V GC+  AE + I  R P V  + GPQ Y  +   +     
Sbjct: 65  LA---------LNENGKVIVTGCLG-AEPDVIRERHPNVLAITGPQAYESVMNAVHEVAP 114

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                       D F  L +   G        A+L I EGC   C+FC++P  RG  +SR
Sbjct: 115 ---------PAHDPFVDL-VPPQGVKLTPRHYAYLKISEGCSNRCSFCIIPALRGDLVSR 164

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE---------KCTFSDLLYSLSE 256
            +++V+ EA KL+  GV EI ++ Q+ +A  G  +  +         +  F DL   L E
Sbjct: 165 PINEVLREAEKLVQAGVKEILVISQDTSA-YGLDIKYQEAMWQDRTVRTKFLDLSRELGE 223

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           +   VR+ Y   +P       + A G    ++PYL +P Q  S  +LK+M R     +  
Sbjct: 224 MGVWVRMHYVYPYPHVDEVIPLMAEG---KILPYLDIPFQHASPAVLKNMRRPAHQEKTS 280

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
           + I   R   PD+A+ S FIVG+PGET++DF+  +D +D+    +A  FKY    G   +
Sbjct: 281 RRIQAWRETCPDLAVRSTFIVGYPGETEEDFQMLLDWLDEAKIERAGCFKYEAVKGAKAN 340

Query: 377 NM-LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK--EKGKLVGRSP 433
           ++ LEQV E VK  R      K ++   +     VG+ + V+I++     +KG+    +P
Sbjct: 341 DLGLEQVPEEVKEARWHRFMAKQQQISTNLLKKKVGKRLPVIIDEANGTIDKGRTRYDAP 400

Query: 434 WLQS-VVLNS-KNHNIGDIIKVRITDVKISTLYGELV 468
            +   V ++S +   +GDI+ V+I       L+G  V
Sbjct: 401 EIDGSVHISSRRPLRVGDIVTVKIEASDAYDLHGTAV 437


>gi|291395737|ref|XP_002714277.1| PREDICTED: CDK5 regulatory subunit associated protein 1-like 1
           [Oryctolagus cuniculus]
          Length = 571

 Score =  346 bits (888), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 116/457 (25%), Positives = 213/457 (46%), Gaps = 19/457 (4%)

Query: 15  SQIVDQCIVP--QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHI 72
           S       +P  Q+ +++++GC  N  D   M     + GY+   +  DADL +LN+C +
Sbjct: 51  SSPPSDSTIPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTV 110

Query: 73  REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT 132
           +  A +   + + + +              VV+AGCV QA+  +   +      V+G Q 
Sbjct: 111 KNPAEDHFRNSIKKAQEENKK---------VVLAGCVPQAQPRQDYLKG---LSVIGVQQ 158

Query: 133 YYRLPELLERARFGKRVVDTDYSVED-KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCT 191
             R+ E++E    G  V       E+ +    + +D    RK  +   ++I  GC   CT
Sbjct: 159 IDRVVEVVEETIKGHSVRLLGQKKENGRRLGGARLDLPKIRKNPLIEIISINTGCLNACT 218

Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLL 251
           +C   + RG   S  + ++VD A++    GVCEI L  ++  A  G+ +  +  T    L
Sbjct: 219 YCKTKHARGNLASYPIDELVDRAKQSFQEGVCEIWLTSEDTGA-YGRDIGTDLPTLLWKL 277

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
             +     ++RL  T           +    +   +  +LH+PVQS SD +L +M R + 
Sbjct: 278 VDVIPEGAMLRLGMTNPPYILEHLQEMAKILNHPRVYAFLHIPVQSASDSVLMAMKREYC 337

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
             +++ ++D ++   P I I++D I GFPGETD DF+ T+ LV++  +   F  ++ PR 
Sbjct: 338 VADFKSVVDFLKEKVPGITIATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRP 397

Query: 372 GTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR 431
           GTP + M EQV  ++K +R   L +       +  D  +G+  +VL+ +   +    V  
Sbjct: 398 GTPAAKM-EQVPAHMKKQRTKDLSQVF--HSYNPYDHKIGERQQVLVTEESFDSKFYVAH 454

Query: 432 SPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           + + + V++      +G +++V I +     + G+ V
Sbjct: 455 NRFYEQVLVPKNPAFMGKMVEVDIYESGKHFMKGQPV 491


>gi|313905328|ref|ZP_07838694.1| MiaB-like tRNA modifying enzyme [Eubacterium cellulosolvens 6]
 gi|313469798|gb|EFR65134.1| MiaB-like tRNA modifying enzyme [Eubacterium cellulosolvens 6]
          Length = 437

 Score =  346 bits (888), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 131/432 (30%), Positives = 225/432 (52%), Gaps = 16/432 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++  + + GC++N Y+   M+ M    GYE V     AD+ V+NTC +   A  K    L
Sbjct: 5   KKAALHNLGCKVNSYELEAMQQMLEKAGYEIVPFEPGADVYVINTCTVTNIADRKSRQML 64

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER-A 143
            + +++         D +VV  GC AQ +GEE+ ++   +++V+G      L E L   +
Sbjct: 65  HKAKSM-------NPDAVVVAVGCYAQVKGEEL-KKDEAIDLVLGSNCKNDLIEALADYS 116

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           R G++ +       DK      +D      R   AF+ +Q+GC++FCT+C++PY RG   
Sbjct: 117 RTGEKQIQRTEWDTDKSYEELYIDRTEEHTR---AFIKVQDGCNQFCTYCIIPYARGRVR 173

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR ++ V +E ++L  +GV E+ + G +V +  GK L GE      L+ +++E++G+ R+
Sbjct: 174 SRKIADVYEEVKRLAASGVKEVVVTGIHVCS-YGKDL-GEGEDLLALIRAVNEVEGIERI 231

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R  +  P  +S+  IKA  ++  + P+ HL +QSG DR LK MNR ++  ++ ++ D IR
Sbjct: 232 RLGSLEPGSISEDFIKALSEMPKVCPHFHLSLQSGCDRTLKRMNRHYSTADFTEVADWIR 291

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
                 A+ +D I GFPGE++ DF    D V+ + + +   F YS R GT  ++  +Q  
Sbjct: 292 KYYEHPALCTDVITGFPGESEADFAECRDFVEAVHFFETHVFPYSRRKGTKAADYPDQNT 351

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG--KLVGRSPWLQSVVLN 441
           E VK  R   L+   RE++V F    + + I+VL E+  + +G     G     Q V++ 
Sbjct: 352 EAVKKARGKVLRDIDRERRVEFLRYYLRKPIQVLFEEEIEFEGKKYWSGHGREYQKVLVA 411

Query: 442 SKNHNIGDIIKV 453
                  +++ V
Sbjct: 412 DSRDLTNEMLTV 423


>gi|146302766|ref|YP_001197357.1| MiaB-like tRNA modifying enzyme [Flavobacterium johnsoniae UW101]
 gi|146157184|gb|ABQ08038.1| MiaB-like tRNA modifying enzyme [Flavobacterium johnsoniae UW101]
          Length = 444

 Score =  346 bits (888), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 123/439 (28%), Positives = 209/439 (47%), Gaps = 17/439 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++    + GC++N  ++  +   F  +G++RV+  + AD+ V+NTC + E A +      
Sbjct: 5   KKVAFYTLGCKLNFSETSTIARNFNDEGFDRVDFEEVADIYVINTCSVTENADK------ 58

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            + + +    +K      V   GC AQ + EE+      V++V+G    +++ + +    
Sbjct: 59  -QFKQVVKKAMKLNEKAFVAAVGCYAQLKPEELAAVD-GVDLVLGATEKFKITDYIHDLS 116

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
                 D       +        G Y+      AFL +Q+GCD  CT+C +P  RGI  S
Sbjct: 117 KN----DMGEVHSCEIAEADFYVGSYSIGDRTRAFLKVQDGCDYKCTYCTIPLARGISRS 172

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK---CTFSDLLYSLSEIKGLV 261
            +L  V+  A+++    + EI L G N+    GKG  G K    TF DL+ +L ++ G+ 
Sbjct: 173 DALENVLKNAKEISAQNIREIVLTGVNIG-DYGKGEFGNKKHEHTFLDLVQALDKVDGIE 231

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           RLR ++  P  + +  I         +P+ H+P+QSGS+ ILK M RR+    Y   +++
Sbjct: 232 RLRISSIEPNLLKNETIDFVSKSRTFVPHFHIPLQSGSNDILKLMKRRYLREVYIDRVNK 291

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           IR V P   I  D IVGFPGETD+ F  T   ++++  +    F YS R  T   +M   
Sbjct: 292 IREVMPHACIGVDVIVGFPGETDEHFLETYHFLNELDISYLHVFTYSERDNTEAVDMPGV 351

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           V  NV+A+R   L+    +++ +F ++ +G    VL E   KE G + G +     V   
Sbjct: 352 VPSNVRAKRSKMLRGLSVKKRRAFYESQLGTNRTVLFESENKE-GYIHGFTENYVKVKTP 410

Query: 442 SKNHNIGDIIKVRITDVKI 460
                I  + ++ +T +  
Sbjct: 411 WNPELINTLHEINLTKIDE 429


>gi|15899133|ref|NP_343738.1| hypothetical protein SSO2380 [Sulfolobus solfataricus P2]
 gi|284173752|ref|ZP_06387721.1| hypothetical protein Ssol98_03728 [Sulfolobus solfataricus 98/2]
 gi|13815682|gb|AAK42528.1| Conserved hypothetical protein [Sulfolobus solfataricus P2]
 gi|261600882|gb|ACX90485.1| RNA modification enzyme, MiaB family [Sulfolobus solfataricus 98/2]
          Length = 421

 Score =  346 bits (888), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 130/444 (29%), Positives = 229/444 (51%), Gaps = 30/444 (6%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +  +V++YGC +N  D+  M  +  S+GY  V + ++AD+I+LNTC +R +  E++   +
Sbjct: 2   KNIYVETYGCALNRADTYVMMTLLKSEGYNFVENPENADIIILNTCAVRLETEERMKQRI 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             +  L            +VVAGC++ AE   +L  +P  +++ GPQ+  R+ +++ ++ 
Sbjct: 62  KELNTLSKK---------LVVAGCMSSAEPATVLSIAPNASLI-GPQSVERIVDIV-KSE 110

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
             K V++ D ++                  G  A + + +GC   C+FC+    R    S
Sbjct: 111 ERKIVIEGDRALITP-----------RTFDGKIAIIPVADGCAGNCSFCITKLARRKLRS 159

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
             L ++V+ AR  I +G  EI L GQ+  A  G  L G   +  D++  +++I G   +R
Sbjct: 160 YPLREIVNAARDAIQSGAREIELTGQDTAA-YGLDL-GGSISLVDVVNKVADIDGDFMIR 217

Query: 265 YTTSHPRD---MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
                P     + D LI+A  +   +  ++HLPVQSG DR+LK MNR++T  EY+++I  
Sbjct: 218 IGMMTPEQAMRIMDDLIEAIRN-PKVYKFIHLPVQSGDDRVLKLMNRKYTVDEYKELISE 276

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           IR   P + I++D IVG PGE ++ F  T+ L+ ++ + +     YS R  T  ++M  Q
Sbjct: 277 IRHKIPFVNITTDIIVGHPGEDEEAFNNTLLLMKELRFERIHLAMYSIRPNTRSASMP-Q 335

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           V +++K +R+    K   +  +S +   VG    V+  + G++ G ++GR      VV+ 
Sbjct: 336 VPDSIKKKRIQIANKLYEDLALSIHLDYVGSTSRVITTELGRK-GSVIGRLMNYIPVVIR 394

Query: 442 SKNHNIGDIIKVRITDVKISTLYG 465
           S+N  +G    V+IT+     L G
Sbjct: 395 SENVELGKWYDVKITEASFYDLRG 418


>gi|296197315|ref|XP_002806724.1| PREDICTED: LOW QUALITY PROTEIN: CDK5 regulatory subunit-associated
           protein 1-like 1-like [Callithrix jacchus]
          Length = 579

 Score =  346 bits (888), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 114/456 (25%), Positives = 209/456 (45%), Gaps = 18/456 (3%)

Query: 15  SQIVDQCIVP-QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIR 73
           S   D  I   Q+ +++++GC  N  D   M     + GY+   +  DADL +LN+C ++
Sbjct: 53  SPPSDSTIPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVK 112

Query: 74  EKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTY 133
             A +   + + + +              +V+A CV QA+  +   +      ++G Q  
Sbjct: 113 NPAEDHFRNSIKKAQEENKK---------IVLAVCVPQAQPRQDYLKG---LSIIGVQQI 160

Query: 134 YRLPELLERARFGKRVVDTDYSVED-KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTF 192
            R+ E++E    G  V       ++ K    + +D    RK  +   ++I  GC   CT+
Sbjct: 161 DRVVEVVEETIKGHSVRLLGQKKDNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTY 220

Query: 193 CVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLY 252
           C   + RG   S  + ++VD A++    GVCEI L  ++  A  G+ +  +  T    L 
Sbjct: 221 CKTKHARGNLASYPIDELVDRAKQSFQEGVCEIWLTSEDTGA-YGRDIGTDLPTLLWKLV 279

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
            +     ++RL  T           +    +   +  +LH+PVQS SD +L  M R +  
Sbjct: 280 EVIPEGAMLRLGMTNPPYILEHLEEMAKILNHPRVYAFLHVPVQSASDSVLMEMKREYCV 339

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
            ++++++D ++   P I I++D I GFPGETD DF+ T+ LV++  +   F  ++ PR G
Sbjct: 340 ADFKRVVDFLKEKVPGITIATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPG 399

Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS 432
           TP + + EQV   VK +R   L +       S     +G+  +VL+ +   +    V  +
Sbjct: 400 TPAAKI-EQVPAQVKKQRTKDLSRVF--HSYSPYHHKIGERQQVLVTEESFDSKFYVAHN 456

Query: 433 PWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            + + V++      +G +++V I +     + G  V
Sbjct: 457 RFYEQVLVPKNPAFMGKMVEVDIYESGKHFMKGRPV 492


>gi|94502388|ref|ZP_01308846.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Candidatus Sulcia
           muelleri str. Hc (Homalodisca coagulata)]
 gi|94451055|gb|EAT14022.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Candidatus Sulcia
           muelleri str. Hc (Homalodisca coagulata)]
          Length = 438

 Score =  346 bits (888), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 144/446 (32%), Positives = 246/446 (55%), Gaps = 25/446 (5%)

Query: 37  NVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIK 96
           N+ DS  +  +  ++G+ +  ++ +A++I++NTC IR+K+ +K+   + +I+ +    IK
Sbjct: 1   NISDSEIVSSILNNKGFIKTENLKEANIILINTCSIRDKSEKKILLRINQIKFI----IK 56

Query: 97  EGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK-RVVDTDYS 155
           +  D+L+ + GC+A       ++   ++N+VVGP +Y  +P L+      K   + T +S
Sbjct: 57  KNNDILIGILGCMAYKFKN--IKEKKLINLVVGPDSYREIPNLINNFFKKKGEYISTSFS 114

Query: 156 VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEAR 215
             + +  +         ++ +TAF+TI  GCD  CTFCVVP+TRG E SR    ++ E +
Sbjct: 115 KTETYADIIP----KREEKKITAFVTIMRGCDNMCTFCVVPFTRGREKSRDPYSIIKECK 170

Query: 216 KLIDNGVCEITLLGQNVNA--WRGKGL----------DGEKCTFSDLLYSLSEIKGLVRL 263
            L   G  EI LLGQNV++  W G GL          + E   FS LL  ++    L+R+
Sbjct: 171 FLFKKGYKEIILLGQNVDSYLWYGGGLKKKFKIKEIKNEEIINFSKLLELVAISVPLMRI 230

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+ TS+P DMSD ++        +  ++HLPVQSGS+RIL  MNR+HT  +Y  +I++I+
Sbjct: 231 RFCTSNPNDMSDNVLNVIKKYINICKHIHLPVQSGSNRILSLMNRKHTCEDYILLINKIK 290

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQV 382
           ++ P+ ++S D I GF  E ++D   T++L++ + Y  ++ F YS R+GT     +++ V
Sbjct: 291 NIIPNCSLSCDIITGFCNENENDHNETLNLMNYVKYNFSYMFIYSHRIGTYAYKKLIDNV 350

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441
             + K  RL  +    +      N   +G I ++LIE    +      GR+     V+  
Sbjct: 351 SLSTKKRRLTEIINLQKTHSYYRNRKYIGSIQDILIEGISTKNINFFYGRNSGNDIVIFP 410

Query: 442 SKNHNIGDIIKVRITDVKISTLYGEL 467
            KN+ IGD IKV+I +   +TL G++
Sbjct: 411 KKNYKIGDFIKVKINNCTSATLVGDI 436


>gi|284036269|ref|YP_003386199.1| MiaB-like tRNA modifying enzyme [Spirosoma linguale DSM 74]
 gi|283815562|gb|ADB37400.1| MiaB-like tRNA modifying enzyme [Spirosoma linguale DSM 74]
          Length = 449

 Score =  346 bits (888), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 124/452 (27%), Positives = 221/452 (48%), Gaps = 19/452 (4%)

Query: 17  IVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA 76
           + D  +  ++    + GC++N  ++  +  +   QG+ERV      D+ ++NTC + + A
Sbjct: 1   MQDTLLAVKKVAFYTLGCKLNFSETSTLARLMEQQGFERVEFNQQPDVFIINTCSVTDNA 60

Query: 77  AEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL 136
            +K    +   +       K   +  V + GC AQ + +EI    P V+ V+G    +RL
Sbjct: 61  DKKCRKIVREAQ-------KINPEGYVAILGCYAQLKPKEI-SEIPGVDAVLGAAEKFRL 112

Query: 137 PELLE---RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC 193
            EL+    +   G+     +  +E+  +  +     Y+       FL +Q+GCD  C +C
Sbjct: 113 HELMPTFVKVPTGEPAQVFNSPIEEALDYHA----AYSLNDRTRTFLKVQDGCDYPCAYC 168

Query: 194 VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC-TFSDLLY 252
            +P  RG   S +++ VV  AR++ + GV EI L G N+  +    ++G++  TF DL+ 
Sbjct: 169 TIPLARGKSRSDTIANVVKAAREIAERGVKEIVLTGVNIGDF--GLINGQRTETFFDLVQ 226

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
           +L E+ G+ R R ++  P  ++D +I         +P+ H+P+QSGS+R+L  M RR+  
Sbjct: 227 ALDEVDGIERFRISSIEPNLLTDEIIAFVAQSKRFVPHFHIPLQSGSNRVLGLMRRRYKR 286

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
             Y   +++I+ + P   I  D IVG PGETD +F+ T   ++++  +    F YS R  
Sbjct: 287 ELYVDRVEKIKELMPHACIGVDVIVGHPGETDVEFKETYMFLNELPISYLHVFTYSERPN 346

Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS 432
           T    +   V  +++AER   L     +++ +F DA VG+   VL E+   + GK+ G +
Sbjct: 347 TTALTIKPTVSGHIRAERSKMLHILSDKKRRAFYDAQVGRTATVLFEEDIAD-GKMQGFT 405

Query: 433 PWLQSVVLNSKNHNIGDIIKVRITDVKISTLY 464
                VV       I + + V ++ V    L 
Sbjct: 406 ENYVRVVAKYDPLLINETLAVHLSGVNAEGLM 437


>gi|225181946|ref|ZP_03735380.1| MiaB-like tRNA modifying enzyme YliG [Dethiobacter alkaliphilus AHT
           1]
 gi|225167386|gb|EEG76203.1| MiaB-like tRNA modifying enzyme YliG [Dethiobacter alkaliphilus AHT
           1]
          Length = 440

 Score =  346 bits (888), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 123/450 (27%), Positives = 199/450 (44%), Gaps = 24/450 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +  V S GC  N+ DS  M  +    G+      + A +I++NTC   + A E+  + + 
Sbjct: 5   KVAVVSLGCAKNLVDSETMLGLLNEDGFTLTTDPEKAHVIIINTCGFIDAAKEESIAKIL 64

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +   K    +     L++ AGC+AQ   +E+L   P V+ + G    +     + R   
Sbjct: 65  EMAAYKEKNCR-----LLLAAGCMAQRFADELLDELPEVDGLFGTNDVHGAAVAIRRGLA 119

Query: 146 GKRVVDT--DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           G++V  T  +++  D   RL             TA+L I EGCD  CT+C +P  RG   
Sbjct: 120 GEKVSFTQGEFAGSDDAPRLLSTPSH-------TAYLKIAEGCDNRCTYCAIPAIRGPYQ 172

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR    VV EA+ L   GV E+ L+ Q++    G    G K     LL  L+ I G+  +
Sbjct: 173 SRDGQAVVSEAQSLAAGGVKELNLIAQDIT-LYGTDRTG-KAQLPKLLGELAAIDGVHWI 230

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R   ++P  +   +I+A    + +  YL LP+Q GSD+IL+ M R+ TA +  ++I+ +R
Sbjct: 231 RLLYAYPERLDQRIIEAVAREEKVCKYLDLPLQHGSDKILRRMGRKTTADKILKLIETLR 290

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              P I + S FI GFPGE +++F   +  + +    +   F YS   GTP +    QV 
Sbjct: 291 REVPGIVLRSSFIAGFPGEGEEEFGEMLAFLKEAQLDRVGFFAYSREEGTPAAAYSNQVP 350

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRS-------PWL 435
             VK ER+                  VG+ +  +++     +   L+ RS          
Sbjct: 351 AEVKEERVRRAVALQSAISEKKQQQLVGKTVTAMVDGSSAQDPSILLARSYMQAPEVDGY 410

Query: 436 QSVVLNSKNHNIGDIIKVRITDVKISTLYG 465
             +  + K    G ++ V IT      L  
Sbjct: 411 IRIQNSDKKAQKGGLLPVTITGFDGYDLLA 440


>gi|168060037|ref|XP_001782005.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162666496|gb|EDQ53148.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 489

 Score =  346 bits (888), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 124/449 (27%), Positives = 209/449 (46%), Gaps = 24/449 (5%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           +  Q  ++K++GC  N  DS  M       GY   ++ D ADL ++NTC ++  +   + 
Sbjct: 62  VAMQTVYLKTFGCSHNQSDSEYMAGQLSDYGYSVTDAPDGADLWLINTCTVKNPSQSAME 121

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           + + + ++             +VVAGCV Q  G++ L+    V+VV G Q   R+ E++E
Sbjct: 122 NLIRKGKDAGKP---------LVVAGCVPQ--GDKNLKDLEGVSVV-GVQQIDRVVEVVE 169

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
               G  V     S       L  +D    RK      + I  GC   CT+C   + RG 
Sbjct: 170 ETLKGHEVRLLRRS------SLPSLDLPKVRKNKFVEIVPINVGCLGACTYCKTKHARGH 223

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
             S  L+ +VD  + ++  GV EI L  ++  A  G  L  +  T  + L  +       
Sbjct: 224 LGSYPLASLVDRVKGVVAEGVKEIWLSSEDTGA-YGIDLGTDLPTLLNALVDVLPKDRSC 282

Query: 262 RLRYTTSHPRDMSDCL--IKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
            LR   ++P  +   L  I A  +   +  +LH+PVQSGSD +L +MNR +T  +++++ 
Sbjct: 283 MLRIGMTNPPYILKHLESIAAILNHPCVYSFLHVPVQSGSDNVLCAMNREYTVSDFKKVA 342

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
           D +  + PD+ +++D I GFPGET +DF ATM LV +  ++Q    ++ PR GTP + M 
Sbjct: 343 DTLLRLVPDLHLATDIICGFPGETSEDFEATMALVKEYKFSQLHISQFYPRPGTPAARM- 401

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV 439
           ++V      +R   L      +  +      G+   V +     +   LVG +     V+
Sbjct: 402 KRVPTAEVKKRSRELTTLF--ESFNPYSGMEGKEQRVWVTDVASDGVHLVGHNKSYVQVL 459

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
           L      +G  + V+I  V   ++ GE++
Sbjct: 460 LPEAEGLMGSSVDVKIISVNRWSVMGEVL 488


>gi|329847307|ref|ZP_08262335.1| RNA modification enzyme, MiaB family protein [Asticcacaulis
           biprosthecum C19]
 gi|328842370|gb|EGF91939.1| RNA modification enzyme, MiaB family protein [Asticcacaulis
           biprosthecum C19]
          Length = 455

 Score =  346 bits (888), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 125/453 (27%), Positives = 196/453 (43%), Gaps = 38/453 (8%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
             S GC   + DS R+      +GY+   S   AD+IV+NTC   + A E+  + +G   
Sbjct: 3   FVSLGCPKALVDSERILTRLKGEGYDTSASYAGADVIVVNTCGFLDSAKEESLNAIGEAL 62

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
                         V+V GC+   +   I  R P V  V G   Y  + + +        
Sbjct: 63  AENGK---------VIVTGCMG-GDEAMIRARFPNVAAVTGAHQYDAVMDAVH------- 105

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
             +      D F+ L + D G        A+L I EGCD  C+FC++P  RG   SR ++
Sbjct: 106 --NIVPPKPDPFKSL-VPDEGVRLTPKHYAYLKISEGCDHRCSFCIIPTLRGDLASRPVA 162

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK---------CTFSDLLYSLSEIKG 259
           +V+ EA  L   GV E+ ++ Q+ +A  G  +   +          +F DL   L E+  
Sbjct: 163 EVLREAETLAKAGVKELLVVSQDTSA-YGLDIRYAQSEWRGQNWAASFEDLSRGLGELGI 221

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
            VR+ Y   +P       + A G    ++PYL +P Q  S +ILK+M R     +  Q I
Sbjct: 222 WVRMHYVYPYPHVSGVLPLMAEG---KILPYLDIPFQHASPKILKAMKRPGNQDKTLQRI 278

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
           +  R + PD+ + S F+VGFPGET+ DF   +D ++     +  +F Y    G P   + 
Sbjct: 279 ESWREICPDLTLRSTFVVGFPGETEADFNLLLDWMEAAQIDRVGAFAYENVEGAPAKLLP 338

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK---GKLVGRSPWLQ 436
           + V E VK +RL                A VG+I +VL+++   +     +  G +P + 
Sbjct: 339 DHVPEEVKQDRLARFMAVASRISAQKLAAKVGRIEDVLVDEIRSDGVAVARTRGDAPEID 398

Query: 437 SVVLNSK--NHNIGDIIKVRITDVKISTLYGEL 467
             +          GD  K R+T      L+GE 
Sbjct: 399 GHIYLKGFTGLKAGDYAKARVTRADAYDLWGEP 431


>gi|148557855|ref|YP_001257555.1| ribosomal protein S12 methylthiotransferase [Brucella ovis ATCC
           25840]
 gi|238065299|sp|A5VUQ0|RIMO_BRUO2 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|148369140|gb|ABQ62012.1| conserved hypothetical protein TIGR01125 [Brucella ovis ATCC 25840]
          Length = 438

 Score =  346 bits (887), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 136/459 (29%), Positives = 212/459 (46%), Gaps = 41/459 (8%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R    S GC   + DS R+     S+GYE     D ADL+++NTC   + A ++    +G
Sbjct: 5   RVSFVSLGCPKALVDSERIITGLRSEGYEISRKHDGADLVIVNTCGFLDSARDESLEAIG 64

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                         +  V+V GC+  AE + I  R P V  + GPQ Y  +   +     
Sbjct: 65  LA---------LNENGKVIVTGCLG-AEPDVIRERHPNVLAITGPQAYESVMNAVHEV-- 112

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                       D F  L +   G        A+L I EGC   C+FC++P  RG  +SR
Sbjct: 113 ------APPPPHDPFVDL-VPPQGVKLTPRHYAYLKISEGCSNRCSFCIIPALRGDLVSR 165

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE---------KCTFSDLLYSLSE 256
            +++V+ EA KL+  GV EI ++ Q+ +A  G  +  +         +  F DL   L E
Sbjct: 166 PINEVLREAEKLVQAGVKEILVISQDTSA-YGLDIKYQEAMWQDRTVRTKFLDLSRELGE 224

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           +   VR+ Y   +P       + A G    ++PYL +P Q  S  +LK+M R     +  
Sbjct: 225 MGVWVRMHYVYPYPHVDEVIPLMAEG---KILPYLDIPFQHASPAVLKNMRRPAHQEKTS 281

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
           + I   R   PD+A+ S FIVG+PGET++DF+  +D +D+    +A  FKY    G   +
Sbjct: 282 RRIQAWRETCPDLAVRSTFIVGYPGETEEDFQMLLDWLDEAKIERAGCFKYEAVKGAKAN 341

Query: 377 NM-LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS--- 432
           ++ LEQV E VK  R      K ++   +     VG+ + V+I++     GK  GR+   
Sbjct: 342 DLGLEQVPEEVKEARWHRFMAKQQQISTNLLKKKVGKRLPVIIDEANGTIGK--GRTRYD 399

Query: 433 -PWLQS-VVLNS-KNHNIGDIIKVRITDVKISTLYGELV 468
            P +   V ++S +   +GDI+ V+I       L+G  V
Sbjct: 400 APEIDGSVHISSRRPLRVGDIVTVKIEASDAYDLHGTAV 438


>gi|255020110|ref|ZP_05292181.1| Ribosomal protein S12p Asp88 methylthiotransferase
           [Acidithiobacillus caldus ATCC 51756]
 gi|254970472|gb|EET27963.1| Ribosomal protein S12p Asp88 methylthiotransferase
           [Acidithiobacillus caldus ATCC 51756]
          Length = 454

 Score =  346 bits (887), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 129/463 (27%), Positives = 199/463 (42%), Gaps = 40/463 (8%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P R  + S GC     D+ R+     ++GY  V    +ADL+++NTC   + A ++    
Sbjct: 11  PPRIGMVSLGCPKAGSDTERLLTRLRAEGYLLVADYAEADLVLVNTCGFIDAAVQESLDA 70

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCV-AQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
           +               +  VVV GC+ A+ +GE I R  P V  V GPQ        + R
Sbjct: 71  IAEA---------IDENGRVVVTGCLGAREQGEFIRRAQPKVLAVTGPQQDGATLAAIHR 121

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
               +     D           +   G        A+L I EGC++ C+FCV+P  RG  
Sbjct: 122 VLPPRHDPLQDL----------VPPQGLRLTPRHYAYLKIAEGCNQSCSFCVIPSMRGKL 171

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGEKCT--FSDLLYSL 254
            SR    ++ EA  L+  G  E+ ++ Q+  A+      R    DG       +DL  SL
Sbjct: 172 QSREPGDILREAEALVAAGCRELLIISQDTAAYGSDRRYRTAFADGRPTRAHITDLCTSL 231

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
           + +   VRL Y   +P   +  L+    D   ++PYL +P+Q GS  +LK+M R   + +
Sbjct: 232 AALGAWVRLHYVYPYPHVDA--LVDLMAD-GKILPYLDIPLQHGSPAVLKAMRRPAASDK 288

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
               I R R   PD+ + S FIVGFPGE++ DFR  +D +      +   F YSP  G  
Sbjct: 289 TLDRIARWRRQLPDLTLRSTFIVGFPGESEADFRLLLDFLHAAELDRVGCFSYSPVEGAA 348

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS-- 432
            + + + V E VK ER     +   E   +     VGQ   V+++    E G L+ RS  
Sbjct: 349 ANALADPVPEVVKEERRQRFMEVQAEISAARLRRRVGQECLVVVDGF-TESGHLMARSAA 407

Query: 433 --PWLQSVV----LNSKNHNIGDIIKVRITDVKISTLYGELVV 469
             P +  ++            G  +  RIT      L+G ++ 
Sbjct: 408 EAPEIDGIIQLDPPTGGRPAAGQRLWARITGSTTHDLHGTVLA 450


>gi|163744236|ref|ZP_02151596.1| RNA modification enzyme, MiaB-family, putative [Oceanibulbus
           indolifex HEL-45]
 gi|161381054|gb|EDQ05463.1| RNA modification enzyme, MiaB-family, putative [Oceanibulbus
           indolifex HEL-45]
          Length = 457

 Score =  346 bits (887), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 117/454 (25%), Positives = 199/454 (43%), Gaps = 34/454 (7%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
              + S GC   + DS R+     ++GY        AD +++NTC   + A  +    +G
Sbjct: 28  TIGMVSLGCPKALVDSERILTRLRAEGYGVSPDYAGADAVIVNTCGFLDSAKAESLDAIG 87

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
               LK +         V+V GC+  AE + I    P +  V GP  Y ++ + +  A  
Sbjct: 88  EA--LKENGK-------VIVTGCLG-AEPDYIREHHPKILAVTGPHQYEQVLDAVHGA-- 135

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                       D F  L          R   ++L I EGC+  C FC++P  RG   SR
Sbjct: 136 -------VPPSPDPFIDLLPAQQVSLTPRHY-SYLKISEGCNHKCKFCIIPDMRGRLQSR 187

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-----GEKCTFSDLLYSLSEIKGL 260
               V+ EA +L+DNGV E+ ++ Q+ +A  G  +      G +   +DL   L  +   
Sbjct: 188 PAHAVMREAERLVDNGVKELLVISQDTSA-YGVDIKHAEDRGHRAHITDLARDLGSLGAW 246

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
           VRL Y   +P       + A G   +++PYL +P Q     +LK M R   A +    I 
Sbjct: 247 VRLHYVYPYPHVRKLIPLMAEG---LVLPYLDIPFQHAHPDVLKRMARPAAASKTLDEIA 303

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
             R   PDI + S FIVG+PGET+ +F+  +D +D+    +   F+Y    G   + + +
Sbjct: 304 AWRDTCPDITLRSTFIVGYPGETEAEFQTLLDWLDEAQLDRVGCFQYENVEGARSNALPD 363

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG--KLVGRSPWLQSV 438
            V   VK +R     +K +    +   A VG+ I+V++++  ++    +    +P +   
Sbjct: 364 HVPAEVKQDRWDRFMEKAQAISEAKLAAKVGKRIDVIVDEIDEDAATCRTKADAPEIDGN 423

Query: 439 VLNSKN---HNIGDIIKVRITDVKISTLYGELVV 469
           +   ++     +GDI+ V + +     L+G  + 
Sbjct: 424 LFIDEDFQNLKVGDIVTVEVEEAGEYDLWGRQIT 457


>gi|152981113|ref|YP_001353088.1| MiaB-like tRNA modifying enzyme [Janthinobacterium sp. Marseille]
 gi|238066330|sp|A6SXU1|RIMO_JANMA RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|151281190|gb|ABR89600.1| MiaB-like tRNA modifying enzyme [Janthinobacterium sp. Marseille]
          Length = 453

 Score =  346 bits (887), Expect = 6e-93,   Method: Composition-based stats.
 Identities = 120/474 (25%), Positives = 209/474 (44%), Gaps = 46/474 (9%)

Query: 17  IVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA 76
           + +      +    S GC   + DS ++     ++GY+   S D ADL+++NTC   + A
Sbjct: 1   MTNALQATPKIGFVSLGCPKALVDSEQILTQLRAEGYDTAKSYDGADLVIVNTCGFIDAA 60

Query: 77  AEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVA---QAEGEEILRR-SPIVNVVVGPQT 132
            ++    +G              +  V+V GC+     A+G++I+++  P V  V GP  
Sbjct: 61  VQESLDAIGEA---------LHENGKVIVTGCLGAKKDADGDDIIQKVHPKVLAVTGPHA 111

Query: 133 YYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTF 192
              + + + +          D           +   G        A+L I EGC+  C+F
Sbjct: 112 LGEVMDAVHKHMPKPHAPFIDL----------VPAQGIKLTPKHFAYLKISEGCNHRCSF 161

Query: 193 CVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--K 244
           C++P  RG  +SR ++ V+ EA  L   GV E+ ++ Q+ +A+      R    +G+  K
Sbjct: 162 CIIPSMRGDLVSRPIADVMMEAENLFKAGVKELLVISQDTSAYGVDVKFRMGFWNGKPVK 221

Query: 245 CTFSDLLYSLSEIKG----LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300
              + L+ +L E+       VRL Y   +P   +   + A G    ++PYL +P+Q    
Sbjct: 222 THMTQLVEALGELAKQYGAWVRLHYVYPYPHVDAIIPMMAEG---KILPYLDVPLQHAHP 278

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
            +LK M R  +  +  + I   R++ PD+ I S FI GFPGETD +F   +D + +    
Sbjct: 279 DVLKRMKRPASGEKNIERIQAWRAMCPDLTIRSTFIAGFPGETDAEFEYLLDFLKEAEID 338

Query: 361 QAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
           +   F YSP  G   +++   V E V+ ER   +     E       A VG+ + VL+++
Sbjct: 339 RLGCFAYSPVEGATANDLPNAVPEEVREERRGRVMLLQEEISKKRLQAKVGKTMRVLLDE 398

Query: 421 HGKEKG--KLVGRSPWLQSVVLNSKNH------NIGDIIKVRITDVKISTLYGE 466
             +  G  +    +P +  VV     +       +G+ I V+IT      L+ E
Sbjct: 399 VNRNGGVARSGADAPEIDGVVYVKPPYEPHLKLKVGEFIDVKITGADAHDLWAE 452


>gi|121551156|gb|ABM55768.1| MiaB [Pasteuria ramosa]
          Length = 361

 Score =  346 bits (887), Expect = 6e-93,   Method: Composition-based stats.
 Identities = 139/355 (39%), Positives = 205/355 (57%), Gaps = 7/355 (1%)

Query: 115 EEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKR 174
           + IL++ P V+++ G    +RLP LLE A F K +V   +S E +     +      R  
Sbjct: 9   KRILQKYPYVDLLFGTHNIHRLPYLLEDAYFNKEIVVEVWSREGEI----VEQIPRLRHD 64

Query: 175 GVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA 234
            + AF+ I  GCDKFCT+C+VPYTRG E SR    +++E ++L + G  E+TLLGQNVNA
Sbjct: 65  QLRAFVNIMYGCDKFCTYCIVPYTRGKERSRQPEDIIEEIKQLAEQGYQEVTLLGQNVNA 124

Query: 235 WRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP 294
             GK  D      S+LL  LS+I  + R+R+TTSHP+D  D LI        L+ + HLP
Sbjct: 125 -YGKDFDKFPYRLSNLLDDLSKIN-ISRVRFTTSHPKDCDDELINVLAKRGNLVEHFHLP 182

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           VQSG D ILK M R HT  +Y   + R+R   PDI +++D IVGFPGET++ F  T++L+
Sbjct: 183 VQSGDDTILKRMGRGHTREQYLMFVQRLREAIPDIVLTTDIIVGFPGETEEQFLNTIELL 242

Query: 355 DKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQII 414
            ++ +   FSF YSPR GTP ++M   + +  K+ RL  LQ    +  ++ N   +G  +
Sbjct: 243 KEVQFDAVFSFIYSPRSGTPAADMECNLLDVTKSNRLQYLQTVQNDISLACNKLLIGNKL 302

Query: 415 EVLIEKHGKEK-GKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           EVL+E   K++  +L GR+   + V     +  IG +  V IT      L+G+++
Sbjct: 303 EVLVEGQSKKRQDRLTGRTRTNKLVHFVGSSELIGQLKWVEITSTNSFFLHGQII 357


>gi|148360663|ref|YP_001251870.1| 2-methylthioadenine synthetase; MiaB [Legionella pneumophila str.
           Corby]
 gi|296106272|ref|YP_003617972.1| Fe-S oxidoreductase [Legionella pneumophila 2300/99 Alcoy]
 gi|238066350|sp|A5IGM4|RIMO_LEGPC RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|148282436|gb|ABQ56524.1| 2-methylthioadenine synthetase; MiaB [Legionella pneumophila str.
           Corby]
 gi|295648173|gb|ADG24020.1| Fe-S oxidoreductase [Legionella pneumophila 2300/99 Alcoy]
          Length = 439

 Score =  346 bits (887), Expect = 6e-93,   Method: Composition-based stats.
 Identities = 126/460 (27%), Positives = 208/460 (45%), Gaps = 41/460 (8%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           +  +    S GC   + DS R+     +QGYE V + +DA ++V+NTC   + A ++   
Sbjct: 1   MNHKVGFVSLGCPKALVDSERIITQLKAQGYELVPTYEDAGVVVINTCGFIDSAVQESLD 60

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +      K +  + G    V+V GC+  A+ + I    P V  + G   Y  +   + +
Sbjct: 61  TI------KEAMAENGR---VIVTGCLG-AKADVIKNACPDVLHISGAHAYEEVVNAVHQ 110

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
                          D F +L I   G        A+L I EGC++ CTFC++P  RG  
Sbjct: 111 HLP---------PPADPFTQL-IPPQGIKLTPRHYAYLKISEGCNQKCTFCIIPTMRGKL 160

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE---------KCTFSDLLYS 253
            S  ++Q++ EA+KL   GV E+ ++ Q+ +A  G     +            F DL   
Sbjct: 161 QSYPMAQILTEAKKLKQAGVKELLVISQDTSA-YGVDTRYQQVEWQGKTVNTRFYDLCEQ 219

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
           L E+   VRL Y   +P       +       +++PYL +P+Q  + RILK+M R  ++ 
Sbjct: 220 LGELGIWVRLHYVYPYPHVDDIVPLM---RDGLILPYLDIPLQHANSRILKAMKRPASSE 276

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
                I   R + PDI + S FIVGFPGET+++F   +  + +    +   FKYSP  G 
Sbjct: 277 NTLLRIASWREICPDITLRSTFIVGFPGETEEEFSELLAFLKEAQLDRVGCFKYSPVEGA 336

Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS- 432
             +++   V E++K ER     +   E   +     +G    VLI++  ++  +++ RS 
Sbjct: 337 KANDLDNPVSEDIKEERYHRFMQVQAEISRNKLKNKIGSTQTVLIDEITED--QIIARSK 394

Query: 433 ---PWLQSVVLNSK--NHNIGDIIKVRITDVKISTLYGEL 467
              P +  +V   K     +G   +  ITD     LYG+L
Sbjct: 395 SDAPEIDGLVYLPKISGITVGSFAEAMITDSDDYDLYGDL 434


>gi|15807855|ref|NP_285512.1| ribosomal protein S12 methylthiotransferase [Deinococcus
           radiodurans R1]
 gi|81552183|sp|Q9RYW7|RIMO_DEIRA RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|6460480|gb|AAF12186.1|AE001862_12 conserved hypothetical protein [Deinococcus radiodurans R1]
          Length = 504

 Score =  346 bits (887), Expect = 6e-93,   Method: Composition-based stats.
 Identities = 129/497 (25%), Positives = 216/497 (43%), Gaps = 56/497 (11%)

Query: 10  VAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNT 69
              + +  +D     +R    S GC   + DS R+     ++GYE   S + AD +++NT
Sbjct: 8   TERLPAPPLDTAS--KRVGFISLGCPKALVDSERILTQLRAEGYEVAPSYEGADAVIVNT 65

Query: 70  CHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG 129
           C     A E+  S +G   +             V+V GC+ +   E+I+ R P V  + G
Sbjct: 66  CGFITPAVEESLSAIGEALDATGK---------VIVTGCLGER-PEKIMERHPKVAAITG 115

Query: 130 ---------------PQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKR 174
                          P        LL  A  G R    +    +      +         
Sbjct: 116 SEAVDDVMGHVRELLPIDQGAFTGLLPVAAPGMRA-GVETPQRENTRHGDVFAPSVKLTP 174

Query: 175 GVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA 234
              A++ + EGC+  C FC++P  RG+++SR    V+ EA +LI  G  E+ ++ Q+ +A
Sbjct: 175 RHYAYVKVAEGCNHTCAFCIIPKLRGLQVSRDAGAVLYEAYRLIAGGTKELMIIAQDTSA 234

Query: 235 WRGKGLDGE---------KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLD 285
             G  L            +   +DL   L E+   VR+ Y   +P       + A G   
Sbjct: 235 -YGVDLRYRESEFQGEQVRAHLTDLAVKLGEMGAWVRMHYVYPYPHVDRVVELMAQG--- 290

Query: 286 VLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDD 345
            ++PYL +P+Q  S +ILK M R   A +    I R R + P++ I S FIVGFPGET++
Sbjct: 291 KVLPYLDIPLQHASPKILKLMRRPG-AGKQLDTIRRWREICPELVIRSTFIVGFPGETEE 349

Query: 346 DFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSF 405
           DF+  +  ++     +  +F YS       + +   V E VK ERL    +  +      
Sbjct: 350 DFQELLQFLEDARLDRVGAFPYSDIEEADANALPGAVPEEVKQERLARFMEVAQRISTEK 409

Query: 406 NDACVGQIIEVLIEKHGKEKG-----KLVGRS----PWLQS-VVLNSKN----HNIGDII 451
               VG++++V+I++   ++      +L+GR+    P +   V L + +      IGDI+
Sbjct: 410 LSEKVGRVMDVIIDEFNDDEDDQPGTRLIGRTKGDAPGIDGQVYLYAGDFAGLVKIGDIV 469

Query: 452 KVRITDVKISTLYGELV 468
           + RI D     L+GE++
Sbjct: 470 RARIEDSDEYDLFGEVI 486


>gi|54296709|ref|YP_123078.1| ribosomal protein S12 methylthiotransferase [Legionella pneumophila
           str. Paris]
 gi|81371029|sp|Q5X765|RIMO_LEGPA RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|53750494|emb|CAH11888.1| hypothetical protein lpp0740 [Legionella pneumophila str. Paris]
          Length = 439

 Score =  346 bits (887), Expect = 6e-93,   Method: Composition-based stats.
 Identities = 126/460 (27%), Positives = 208/460 (45%), Gaps = 41/460 (8%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           +  +    S GC   + DS R+     +QGYE V + +DA ++V+NTC   + A ++   
Sbjct: 1   MNHKVGFVSLGCPKALVDSERIITQLKAQGYELVPTYEDAGVVVINTCGFIDSAVQESLD 60

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +      K +  + G    V+V GC+  A+ + I    P V  + G   Y  +   + +
Sbjct: 61  TI------KEAMAENGR---VIVTGCLG-AKADVIKNACPDVLHISGAHAYEEVVNAVHQ 110

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
                          D F +L I   G        A+L I EGC++ CTFC++P  RG  
Sbjct: 111 HLP---------PPADPFTQL-IPPQGIKLTPRHYAYLKISEGCNQKCTFCIIPTMRGKL 160

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE---------KCTFSDLLYS 253
            S  ++Q++ EA+KL   GV E+ ++ Q+ +A  G     +            F DL   
Sbjct: 161 QSYPMAQILTEAKKLKQAGVKELLVISQDTSA-YGVDTRYQQIEWQGKTVNTRFYDLCEQ 219

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
           L E+   VRL Y   +P       +       +++PYL +P+Q  + RILK+M R  ++ 
Sbjct: 220 LGELGIWVRLHYVYPYPHVDDIVPLM---RDGLILPYLDIPLQHANSRILKAMKRPASSE 276

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
                I   R + PDI + S FIVGFPGET+++F   +  + +    +   FKYSP  G 
Sbjct: 277 NTLLRIASWREICPDITLRSTFIVGFPGETEEEFSELLAFLKEAQLDRVGCFKYSPVEGA 336

Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS- 432
             +++   V E++K ER     +   E   +     +G    VLI++  ++  +++ RS 
Sbjct: 337 KANDLDNPVSEDIKEERYHRFMQVQAEISRNKLKNKIGSTQTVLIDEITED--QIIARSK 394

Query: 433 ---PWLQSVVLNSK--NHNIGDIIKVRITDVKISTLYGEL 467
              P +  +V   K     +G   +  ITD     LYG+L
Sbjct: 395 SDAPEIDGLVYLPKISGITVGSFAEAMITDSDDYDLYGDL 434


>gi|225850050|ref|YP_002730284.1| hypothetical protein PERMA_0494 [Persephonella marina EX-H1]
 gi|225646246|gb|ACO04432.1| conserved hypothetical protein [Persephonella marina EX-H1]
          Length = 432

 Score =  346 bits (887), Expect = 6e-93,   Method: Composition-based stats.
 Identities = 121/451 (26%), Positives = 211/451 (46%), Gaps = 31/451 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +  V S GC  N+ D+  +     +   + V+ ++DA++I++NTC   ++A E+  + + 
Sbjct: 2   KIGVISLGCPKNLVDTELILGRLKTDKVQIVSDLNDAEVILVNTCGFIDEAKEESVNTIL 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +  LK       G+  +VV GC+ +   +E+ +  P V++ +         ELL   + 
Sbjct: 62  EVARLKE-----NGNKKIVVTGCLVERYKKELEKEIPEVDMFI-----DLKEELLIPEKL 111

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G +V +            S            TA+L I EGCD  C FC +P  RG   SR
Sbjct: 112 GIKVDN----------FSSPYQKRLLTTPKHTAYLKISEGCDHTCGFCAIPSIRGKHRSR 161

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           ++  +V+EA++L D GV E+ ++ Q+  ++ G  + G K    +L+  L +I+G+  +R 
Sbjct: 162 TIEDIVEEAKRLADLGVKELNIVSQDT-SYYGTDIYG-KPMLWELISRLEKIEGVRWIRL 219

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
              +P  +++  IK   D + ++ Y  +P+Q   DRILK M R +      +I++     
Sbjct: 220 YYLYPTTVTEDFIKRMADSEKVVKYFEMPIQHTEDRILKDMMRGYRKSRIEKILEWKDRY 279

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQVDE 384
            P+ A+ S  IVGFP ET+ DF +  D + +  +     FKYS   GTP      + + E
Sbjct: 280 IPEAAVRSAVIVGFPTETERDFESMKDFIKQAKFDWLGVFKYSHEEGTPAYTKYRDSIPE 339

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL-VGRSP----WLQSVV 439
             K  R   + +         N   +G+ IEV+++   +E   L VGR+      +  +V
Sbjct: 340 EEKIRRKNEITQLQEGITEEKNRDLIGKEIEVIVDGFSEEWETLPVGRTYRSAFEIDGIV 399

Query: 440 LNSKN--HNIGDIIKVRITD-VKISTLYGEL 467
                    +GD  K++I D      L GE+
Sbjct: 400 YIETERPVKVGDFAKLKIKDLADSYDLVGEI 430


>gi|322806672|emb|CBZ04241.1| ribosomal protein S12p Asp88 (E. coli) methylthiotransferase
           [Clostridium botulinum H04402 065]
          Length = 445

 Score =  346 bits (887), Expect = 6e-93,   Method: Composition-based stats.
 Identities = 129/449 (28%), Positives = 215/449 (47%), Gaps = 21/449 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +  + S GC  N  DS  M      +  E V +  +A +I++NTC   E A E+  + + 
Sbjct: 5   KVALVSLGCDKNRIDSELMLYKLNEE-AELVKNPKEAQVIIVNTCGFIETAKEESINTIL 63

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER-AR 144
           ++ + K    K     ++VV GC+ Q    E+    P +++++G   Y +L E ++   +
Sbjct: 64  QMASYK----KTHNCKVLVVTGCLTQRYKGELKELIPEMDIMLGVNDYDKLLESIKVFLK 119

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G++     YS     E   I+          TA++ I EGC+ FCT+C +P  RG   S
Sbjct: 120 SGEKSFYHKYSDTKINEGNRIL-----TTPTYTAYVRIAEGCNNFCTYCAIPRIRGKYRS 174

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R    ++ E   L   GV EI L+ Q+     G  + G+K    +LL  +S+++G+  +R
Sbjct: 175 RKKENILKEVENLAKQGVREIILIAQDTTM-YGIDIYGKKV-LHELLRDISKVEGVKWIR 232

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
               +P +++  LI+   + D +  YL LP+Q  S+ +LK M R+ T      II ++R 
Sbjct: 233 LLYCYPEEITKELIEEIKNNDKVCKYLDLPIQQISNSVLKRMGRKTTKETIINIIKKLRK 292

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
               I + +  IVGFPGET+ +F    + V  +   +   FKYS   GT  + M EQ+DE
Sbjct: 293 EIEGITLRTSLIVGFPGETEGEFSELKEFVSDVKLDKLGVFKYSKEEGTSAALMEEQIDE 352

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVVL 440
            +K +R   +    +      N   +G+I EV++E    ++    GR    SP +   + 
Sbjct: 353 EIKEKREEEIMILQQSISKDINKEKIGKIYEVIVEGT--KEDMYYGRNYEISPEIDGEIY 410

Query: 441 --NSKNHNIGDIIKVRITDVKISTLYGEL 467
               +N  IGDIIKV++T      L G +
Sbjct: 411 FEKDENVKIGDIIKVKVTHSLEYDLIGVV 439


>gi|305667336|ref|YP_003863623.1| hypothetical protein FB2170_13853 [Maribacter sp. HTCC2170]
 gi|88709384|gb|EAR01617.1| hypothetical protein FB2170_13853 [Maribacter sp. HTCC2170]
          Length = 437

 Score =  346 bits (887), Expect = 6e-93,   Method: Composition-based stats.
 Identities = 126/438 (28%), Positives = 213/438 (48%), Gaps = 17/438 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++    + GC++N  ++  +   F   GYERV+  + AD+ V+NTC + E A +      
Sbjct: 2   KKVAFYTLGCKLNFSETSTIARGFQKDGYERVDFSEHADMYVINTCSVTENADK------ 55

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R + +    IK+     +   GC AQ + E++      V++V+G    +++ + +    
Sbjct: 56  -RFKTIVKQAIKKNPQAFIAAIGCYAQLKPEQLAAVD-GVDLVLGATEKFKISDYINDLS 113

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
             +  +   +S E   +      G Y       AFL +Q+GCD  CTFC +P  RGI  S
Sbjct: 114 KNE--IGEVHSCE--IDEADSFVGSYAIGDRTRAFLKVQDGCDYKCTFCTIPLARGISRS 169

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK---CTFSDLLYSLSEIKGLV 261
            ++  V+  A ++   G+ EI L G N+  + GKG  G K    TF DL+ +L  + G+ 
Sbjct: 170 DTMDNVLKNAAEISSKGIKEIVLTGVNIGDF-GKGEFGNKKHEHTFLDLVNALDNVDGVH 228

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           RLR ++  P  + +  I      +  +P+ H+P+QSGSD IL+ M RR+    Y   + R
Sbjct: 229 RLRISSIEPNLLKNETIDFVSKSNSFVPHFHIPLQSGSDEILRLMKRRYQKELYVDRVKR 288

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I+ V P   I  D IVGFPGETDD F  T   ++++  +    F YS R  TP S M + 
Sbjct: 289 IKDVMPFACIGVDVIVGFPGETDDHFLETYHFLNELNVSYLHVFTYSERDNTPASEMTDP 348

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           V + V+ +R   L+    +++ +F +  + +   VL E   K+ G + G +     V   
Sbjct: 349 VPQKVRTKRSKMLRALSVKKRRAFYEGQLNRRKTVLFEGENKD-GYIHGFTENYVKVKSP 407

Query: 442 SKNHNIGDIIKVRITDVK 459
            K   +  + +V + ++ 
Sbjct: 408 WKPSLVNTLHEVTLKEID 425


>gi|145352560|ref|XP_001420609.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144580844|gb|ABO98902.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 450

 Score =  346 bits (887), Expect = 6e-93,   Method: Composition-based stats.
 Identities = 118/457 (25%), Positives = 210/457 (45%), Gaps = 23/457 (5%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           + S GC  N  D   M       G++  +  + AD IV+N+C   E A  +    +    
Sbjct: 1   MVSLGCPKNTVDGEVMLGDLHGAGFDVTDDHESADAIVINSCGFVEDAKNESVEAILEAS 60

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
            L N   K      ++V GC+AQ    ++    P  +V+VG + Y  LP+ +      + 
Sbjct: 61  QLANGSKK------IIVTGCLAQRYANDLANELPEADVIVGFENYANLPKTVGGLLGVET 114

Query: 149 --VVDTDYSVEDKFERLSIVDGGYNRKR---GVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             ++    +                R R     TA+L + EGCD  CTFC +P  RG   
Sbjct: 115 NGLIAPQQARVQVGGASPPFREEIKRLRITPRHTAYLRVAEGCDHKCTFCAIPSFRGRFR 174

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           S+    ++DEA+ L D+GV E+ L+ ++ N W       +    ++LLY+L+E++G+  +
Sbjct: 175 SKPWQSIIDEAKALADSGVRELNLIAEDTNQWGIDLRASDGRGLAELLYALAEVEGIEWM 234

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R   ++P   SD LI+A  D+  +  Y+ +P+Q  ++  L  MNR         ++ ++R
Sbjct: 235 RILYAYPSYFSDELIRAIADVPQVCKYIDIPLQHITNLSLLRMNRP-PRQHTEDLLYKLR 293

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              PD+A+ + FI GFPGET+++    M       + +  +F YS   GTP     +QV 
Sbjct: 294 DRIPDLALRTTFISGFPGETEEEHEELMQFCRDFKFERLGAFAYSEEDGTPAMEYPDQVP 353

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVV 439
           E ++A R   L  + +E    F  + VG+ ++VLI+   ++    +GR+    P +  VV
Sbjct: 354 EEIRAIRRDQLVSQQQEISEDFAMSRVGKDVDVLIDNWDEDMQAFIGRTTLEAPDIDPVV 413

Query: 440 LNSKNH-------NIGDIIKVRITDVKISTLYGELVV 469
             +++          G + +  +    +  L  + ++
Sbjct: 414 FVTEDKSKGLPPIEPGQMRRCNVIGSSLFDLEAQPIM 450


>gi|294339958|emb|CAZ88321.1| conserved hypothetical protein; putative enzyme [Thiomonas sp. 3As]
          Length = 466

 Score =  346 bits (887), Expect = 6e-93,   Method: Composition-based stats.
 Identities = 122/474 (25%), Positives = 198/474 (41%), Gaps = 55/474 (11%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC   + DS R+     +QGY+   S   ADL+++NTC   + A ++    +G
Sbjct: 17  KIGFVSLGCPKALVDSERILTELRAQGYDTSKSYAGADLVIVNTCGFIDAAVQESLDAIG 76

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEE-----ILRRSPIVNVVVGPQTYYRLPELL 140
                            V+V GC+            +    P V  V GP     + + +
Sbjct: 77  EALAENGK---------VIVTGCLGARNDAATGNNLVREVHPKVLAVTGPHATDEVLQHV 127

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
                            D F  L +   G        A+L I EGC+  CTFC++P  RG
Sbjct: 128 HAVLP---------KPHDPFVDL-VPPAGIKLTPKHYAYLKISEGCNHRCTFCIIPAMRG 177

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLY 252
             +SR + +V+ EAR L  +GV E+ ++ Q+ +A+      R    DG   +   ++L+ 
Sbjct: 178 DLVSRPIGEVLSEARALFASGVKELLVVSQDTSAYGVDVKYRTGFWDGRPIRTRMTELVD 237

Query: 253 SL----SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
           +L    +E    VRL Y   +P       + A G    ++PYL +P+Q     +L+ M R
Sbjct: 238 ALGSLAAEHDAWVRLHYVYPYPHVDEVLPLMAQG---RILPYLDVPLQHAHPDVLRRMKR 294

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
             +     + I R R + P++ + S FI GFPGET+ +F+  +D + +    +   F YS
Sbjct: 295 PASGERNLERIARWREICPELVVRSTFIAGFPGETEAEFQTLLDFIREAELDRVGCFAYS 354

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL 428
           P  G   + + + V E ++ ER         E         VGQ++ VL+++  +E G  
Sbjct: 355 PVEGATANALADPVPEALREERRARFMAVAEEVSTRKLHKRVGQVMRVLVDQASREGG-- 412

Query: 429 VGRS----PWLQSVVLNSKNHNI----------GDIIKVRITDVKISTLYGELV 468
           VGR+    P +   V                  G  ++ RI       L GELV
Sbjct: 413 VGRTFADAPEIDGKVHLLPPDKPSTIMRLAQSGGQFVRARIVRTDGHDLVGELV 466


>gi|170754856|ref|YP_001781949.1| RNA modification protein [Clostridium botulinum B1 str. Okra]
 gi|238065365|sp|B1II37|RIMO_CLOBK RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|169120068|gb|ACA43904.1| RNA modification enzyme, MiaB family [Clostridium botulinum B1 str.
           Okra]
          Length = 445

 Score =  345 bits (886), Expect = 7e-93,   Method: Composition-based stats.
 Identities = 129/449 (28%), Positives = 215/449 (47%), Gaps = 21/449 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +  + S GC  N  DS  M      +  E V +  +A +I++NTC   E A E+  + + 
Sbjct: 5   KVALVSLGCDKNRIDSELMLYKLNEE-AELVKNPKEAQVIIVNTCGFIETAKEESINTIL 63

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER-AR 144
           ++ + K    K     ++VV GC+ Q    E+    P +++++G   Y +L E ++   +
Sbjct: 64  QMASYK----KTHNCKVLVVTGCLTQRYKGELKELIPEMDIMLGVNDYDKLLESIKVFLK 119

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G++     YS     E   I+          TA++ I EGC+ FCT+C +P  RG   S
Sbjct: 120 SGEKSFYHKYSDTKINEGNRIL-----TTPTYTAYVRIAEGCNNFCTYCAIPRIRGKYRS 174

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R    ++ E   L   GV EI L+ Q+     G  + G+K    +LL  +S+++G+  +R
Sbjct: 175 RKKENILKEVENLAKQGVKEIILIAQDTTM-YGIDIYGKKV-LHELLRDISKVEGVKWIR 232

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
               +P +++  LI+   + D +  YL LP+Q  S+ +LK M R+ T      II ++R 
Sbjct: 233 LLYCYPEEITKELIEEIKNNDKVCKYLDLPIQQISNSVLKRMGRKTTKETIINIIKKLRK 292

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
               I + +  IVGFPGET+ +F    + V  +   +   FKYS   GT  + M EQ+DE
Sbjct: 293 EIEGITLRTSLIVGFPGETEGEFSELKEFVSDVKLDKLGVFKYSKEEGTSAALMEEQIDE 352

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVVL 440
            +K +R   +    +      N   +G+I EV++E    ++    GR    SP +   + 
Sbjct: 353 EIKEKREEEIMILQQSISKDINKEKIGKIYEVIVEGI--KEDMYYGRNYEMSPEIDGEIY 410

Query: 441 --NSKNHNIGDIIKVRITDVKISTLYGEL 467
               +N  IGDIIKV++T      L G +
Sbjct: 411 FEKDENVRIGDIIKVKVTHSLEYDLIGVV 439


>gi|256027911|ref|ZP_05441745.1| Fe-S oxidoreductase [Fusobacterium sp. D11]
 gi|289765860|ref|ZP_06525238.1| fe-s oxidoreductase [Fusobacterium sp. D11]
 gi|289717415|gb|EFD81427.1| fe-s oxidoreductase [Fusobacterium sp. D11]
          Length = 435

 Score =  345 bits (886), Expect = 7e-93,   Method: Composition-based stats.
 Identities = 121/445 (27%), Positives = 225/445 (50%), Gaps = 20/445 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++    + GC++N Y++  +++    +GYE V   D +D+ ++N+C +   A  K  + L
Sbjct: 5   KKVAFHTLGCKVNQYETESIKNQLIKRGYEEVPFEDKSDIYIINSCTVTSIADRKTRNML 64

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R +       K   +  V+V GC AQ    EIL     V+ V+  +    +   +    
Sbjct: 65  RRAK-------KINPNAKVIVTGCYAQTNSREIL-EIEDVDFVIDNKNKSNIVNFVGAIE 116

Query: 145 --FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
               +R  + +   E +++           +    A++ IQ+GC+ FC++C +P+ RG  
Sbjct: 117 DISFEREKNGNIFQEKEYQEYEFATL----REMTRAYVKIQDGCNHFCSYCKIPFARGKS 172

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR    ++ E  KL+++G  E+ L+G +++A  G+  + EK +F  LL  + +I+ L R
Sbjct: 173 RSRKKENILKEIEKLVEDGFKEVILIGIDLSA-YGEDFE-EKDSFESLLEDILKIRDLKR 230

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R  + +P  ++D  I+   +   LMP+LH+ +QS  D +LK+M R + +   R+ + ++
Sbjct: 231 VRIGSVYPDKITDRFIELFKN-KNLMPHLHISLQSCDDTVLKNMRRNYGSLLIRESLLKL 289

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           +S   ++  ++D IVGFP E +  F+ T D++ +I ++    F+YS R GT  SNM  +V
Sbjct: 290 KSKIKNMEFTADVIVGFPKEDETMFQNTYDVIREIEFSGLHIFQYSDREGTIASNMDGKV 349

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
           D   K +R   L    +E  +      + + +EVL+E+  ++ G+  G S     V   S
Sbjct: 350 DAKTKKQRADRLDSLKQEMLIESRKKYLEKNLEVLVEE--EKDGEYFGYSQNYLRVKFKS 407

Query: 443 KN-HNIGDIIKVRITDVKISTLYGE 466
                I  +I V+I  V+ + L GE
Sbjct: 408 DEKELINKLINVKIKCVENNVLIGE 432


>gi|302554558|ref|ZP_07306900.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Streptomyces
           viridochromogenes DSM 40736]
 gi|302472176|gb|EFL35269.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Streptomyces
           viridochromogenes DSM 40736]
          Length = 493

 Score =  345 bits (886), Expect = 7e-93,   Method: Composition-based stats.
 Identities = 128/481 (26%), Positives = 206/481 (42%), Gaps = 44/481 (9%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +   + + GC  N  DS  +     + G+  V   ++AD+ V+NTC   E A +     L
Sbjct: 5   RTVALVTLGCARNEVDSEELAGRLEADGWRLVEDAEEADVAVVNTCGFVEAAKKDSVDAL 64

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
               +LK      G    VV  GC+A+  G+E+    P  + V+G   Y  + + L+   
Sbjct: 65  LEANDLKG----HGRTQAVVAVGCMAERYGKELAEALPEADGVLGFDDYANISDRLQTIL 120

Query: 145 FG--------------------------KRVVDTDYSVEDKFERLSIVDGGYNRKRG--- 175
            G                            V    ++  D  E L+   G     R    
Sbjct: 121 NGGIHAAHTPRDRRKLLPISPAERQDSADAVALPGHAPADLPEGLAPASGPRAPLRRRLD 180

Query: 176 --VTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVN 233
               A + +  GCD+ C+FC +P  RG  ISR  S V++E R L + GV EI L+ +N N
Sbjct: 181 GSPVASVKLASGCDRRCSFCAIPSFRGSFISRRPSDVLNETRWLAEQGVKEIMLVSEN-N 239

Query: 234 AWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHL 293
              GK L G+      LL  L+E+ G+ R+R +   P +M   LI        + PY  L
Sbjct: 240 TSYGKDL-GDIRLLESLLPELAEVDGIERVRVSYLQPAEMRPGLIDVLTSTPKVAPYFDL 298

Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
             Q  +  +L++M R      + +++D IR+  P+  + S+FIVGFPGE++ D       
Sbjct: 299 SFQHSAPGVLRAMRRFGDTDRFLELLDTIRNKAPEAGVRSNFIVGFPGESEADLAELERF 358

Query: 354 VDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQI 413
           ++         F YS   GT  +    ++DE+V AERL  + +   E      +  VGQ 
Sbjct: 359 LNGARLDAIGVFGYSDEEGTEAATYDGKLDEDVVAERLARVSRLAEELVSQRAEERVGQT 418

Query: 414 IEVLIEKHGKEKGKLVGR----SPWLQSVVL--NSKNHNIGDIIKVRITDVKISTLYGEL 467
           + VL+E    E+G   GR    +P     VL  +    + G +++ ++   +   L  E 
Sbjct: 419 VHVLVESVDDEEGVY-GRAAHQAPETDGQVLLTSGAGLSSGRMVEAKVVGTEGVDLVAEP 477

Query: 468 V 468
           +
Sbjct: 478 L 478


>gi|302829076|ref|XP_002946105.1| hypothetical protein VOLCADRAFT_127348 [Volvox carteri f.
           nagariensis]
 gi|300268920|gb|EFJ53100.1| hypothetical protein VOLCADRAFT_127348 [Volvox carteri f.
           nagariensis]
          Length = 529

 Score =  345 bits (886), Expect = 7e-93,   Method: Composition-based stats.
 Identities = 125/500 (25%), Positives = 212/500 (42%), Gaps = 58/500 (11%)

Query: 20  QCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEK 79
           Q  + ++  + S GC  NV D   +       G+   +  + +D I++NTC   E A  +
Sbjct: 38  QQPLGKKVSLVSLGCPKNVVDGEVLLGDLTRAGFSVTDDHEQSDAIIVNTCAFVEDAKSE 97

Query: 80  VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL 139
               +    +L      +G    VV+ GC+AQ   +++    P  ++VVG Q Y  L   
Sbjct: 98  SLEAIVEAASLNE----DGKRRKVVITGCLAQRYSDQLASDLPEADLVVGFQKYGNLAAS 153

Query: 140 LER------------------------------ARFGKRVVDTD-------YSVEDKFER 162
           L+R                              A  G R    +         V      
Sbjct: 154 LQRSMGLEPTREALELATAAEAQQQSQEEGVTSADAGARGEVAEAGTSGQRVQVGASTVP 213

Query: 163 LSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGV 222
                  Y      +A+L + EGC+  CTFC +P  RG   S+    V+DEAR L+ NGV
Sbjct: 214 FRPEWDRYRLTPRHSAYLRVAEGCNHACTFCAIPGFRGKFRSKPWQAVLDEARHLVANGV 273

Query: 223 CEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHG 282
            E+ L+ ++ N +     DG     + LL  LS+++GL  +R   ++P   +D LI    
Sbjct: 274 KELNLIAEDTNQYGMDRRDGR--DLAQLLRELSQLEGLHWIRILYAYPSYFNDALIDEIA 331

Query: 283 DLDV--LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFP 340
                 +  YL +P+Q  S+  L +MNR        +++  +R+  P +A+ + FI GFP
Sbjct: 332 TNPKARVCKYLDMPLQHISNLTLLAMNRP-PREHTLKLLTTLRTRIPSLALRTTFISGFP 390

Query: 341 GETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLRE 400
           GETD   R  ++ V    + +   F +S   GTP +++ +QV + V+  R   L    + 
Sbjct: 391 GETDQQHRELVEFVKTFKFERMGCFAFSEEDGTPAASLPDQVPQRVRERRRDELISLQQR 450

Query: 401 QQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVLNSKNHNI-------GD 449
               + +  VG+ +EVL+E +  +   L+GR+    P +  +V  + + +        G 
Sbjct: 451 IGEEWAEGLVGREVEVLVEGYN-DDDWLIGRTQWDAPDVDPLVFLTDSEDPHVAKLEAGQ 509

Query: 450 IIKVRITDVKISTLYGELVV 469
           I +  IT   +  L    +V
Sbjct: 510 IRRCVITSNSLFDLEATPIV 529


>gi|89053506|ref|YP_508957.1| ribosomal protein S12 methylthiotransferase [Jannaschia sp. CCS1]
 gi|123286909|sp|Q28TN0|RIMO_JANSC RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|88863055|gb|ABD53932.1| SSU ribosomal protein S12P methylthiotransferase [Jannaschia sp.
           CCS1]
          Length = 458

 Score =  345 bits (886), Expect = 7e-93,   Method: Composition-based stats.
 Identities = 127/479 (26%), Positives = 204/479 (42%), Gaps = 34/479 (7%)

Query: 1   MGLFIKLIGVAHMVSQIVDQCIVPQ-RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSM 59
           M     L+      +++ D     Q R  + S GC   + DS R+     ++GY      
Sbjct: 1   MSQNPPLLRPDLARARVPDDARPGQPRIGMVSLGCPKALVDSERILTRLRAEGYAISPDY 60

Query: 60  DDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILR 119
             A+ +++NTC   + A  +    +G                 V+V GC+  AE E I  
Sbjct: 61  TGAEAVIVNTCGFLDSAKLESLEAIGEALEANGK---------VIVTGCLG-AEPEYITG 110

Query: 120 RSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAF 179
             P V  V GPQ Y ++ + +  A              D F  L +   G        A+
Sbjct: 111 AHPTVLAVTGPQQYEQVLDAVHGA---------VPPAPDPFIDL-LPPAGVKLTPRHYAY 160

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
           L I EGCD  C FC++P  RG  +SR  + V+ EA KL+D+GV E+ ++ Q+ +A+    
Sbjct: 161 LKIAEGCDHKCKFCIIPDMRGKLVSRPQTAVMREAEKLVDSGVKELLIISQDTSAYGVDW 220

Query: 240 LDGEKCT-----FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV-LMPYLHL 293
            D  K         +L   LS +   VRL Y   +P      LI    D    L+PYL +
Sbjct: 221 KDRNKAGDEKFPILNLSRDLSTLGAWVRLHYVYPYPHV--RELIPLMADPANGLLPYLDI 278

Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
           P Q     +LK M R   A      I   R   P+I + S FIVG+PGET+ +F+  +D 
Sbjct: 279 PFQHAHPDVLKRMARPAAASRTLDEIAAWRRDCPNITLRSTFIVGYPGETEAEFQTLLDW 338

Query: 354 VDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQI 413
           +D+    +   F+Y    G   + + + V   VK +R     +K +    +   A VG+ 
Sbjct: 339 LDEAQLDRIGCFQYENVDGARSNALPDHVAPEVKQDRWDRFMEKAQAISEAKLQAKVGRT 398

Query: 414 IEVLIEKHGKEKG--KLVGRSPWLQSVVLNS---KNHNIGDIIKVRITDVKISTLYGEL 467
           ++VL++   +E    + V  +P +   +           GD++ V + +     L+G+L
Sbjct: 399 MQVLVDSVDEEGATCRTVADAPEIDGNLFIDEGFDGLTPGDLVTVEVDEASEYDLWGKL 457


>gi|315231263|ref|YP_004071699.1| tRNA N6-threonylcarbamoyladenosine 2-methylthiotransferase
           [Thermococcus barophilus MP]
 gi|315184291|gb|ADT84476.1| tRNA N6-threonylcarbamoyladenosine 2-methylthiotransferase
           [Thermococcus barophilus MP]
          Length = 424

 Score =  345 bits (886), Expect = 8e-93,   Method: Composition-based stats.
 Identities = 125/447 (27%), Positives = 216/447 (48%), Gaps = 30/447 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R  +++YGC  N  D+  ME +  + GYE V  +D AD +++NTC +++     +   + 
Sbjct: 2   RVHIETYGCTRNKADAEIMEALLVNAGYEIV-DLDSADYVIVNTCAVKDPTENHMRKRIK 60

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            + +             V+V GC+     E I      V+ ++G ++  R+ E +E A  
Sbjct: 61  ELLDAGKK---------VIVTGCLPHINIEAI---DERVSAILGVKSINRITEAIELAER 108

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G ++VD +    DK E           K  V   + I EGC   CT+C   + RGI  S 
Sbjct: 109 GVKLVDVEQRGIDKLE------LPRMWKSKVVFVVPISEGCLNACTYCATRFARGILKSY 162

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           S  ++V   ++ +  G  EI L  ++     G  +       ++LL  L+ I+G  R+R 
Sbjct: 163 SPEKIVRWVKEALAKGYKEIQLSSEDTG-CYGFDI---GTNLAELLDELTSIEGEFRIRV 218

Query: 266 TTSHPRD---MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
              +P       D LI A+ D + +  +LHLPVQSG + IL+ M R +T  ++  I+   
Sbjct: 219 GMMNPNHVIKFLDELIDAYKD-EKIYKFLHLPVQSGDNEILRKMGRTYTVEDFETIVKAF 277

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R   P++ +++D IVGFPGE+++ F+ T++L+ ++   +    ++SPR GT  + M +Q+
Sbjct: 278 RKEFPELNLNTDIIVGFPGESEEAFQNTVELIKRVKPDKINVSRFSPRPGTLAARMPDQI 337

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
                 ER   L +         N   VG+ + VL      +KG + GR+   + ++L  
Sbjct: 338 VGWRAKERSRYLHRLRLAISYEINQKYVGRELLVL-THGEGKKGGVEGRTMNYKEIILP- 395

Query: 443 KNHNIGDIIKVRITDVKISTLYGELVV 469
               IG+ +KV++T    + L GEL+ 
Sbjct: 396 -EAPIGEFVKVKVTKATATYLMGELIT 421


>gi|317056417|ref|YP_004104884.1| MiaB-like tRNA modifying enzyme [Ruminococcus albus 7]
 gi|315448686|gb|ADU22250.1| MiaB-like tRNA modifying enzyme [Ruminococcus albus 7]
          Length = 434

 Score =  345 bits (886), Expect = 8e-93,   Method: Composition-based stats.
 Identities = 137/448 (30%), Positives = 231/448 (51%), Gaps = 20/448 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + F  ++GC++N Y++  + + F  +G      +  AD+ V+N+C + E+A  K    L 
Sbjct: 2   KIFYYTFGCKVNQYETENIRERFEQEGDTAAADIASADVCVINSCTVTEQADSKCMQMLR 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER-AR 144
           RIR       K     + V+AGC  QA  ++   +    +++VG     R+PE  +R  +
Sbjct: 62  RIR-------KVSPRAVTVLAGCFPQAFSDK-AEKLTECDIIVGTDDKGRIPEFTDRFMK 113

Query: 145 FGKRVVDT-DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            G+R++    +   +KF+ ++    G   +    +++ IQ+GCD +C++C++PY RG   
Sbjct: 114 TGERIISIRKHEKGEKFDTMTNKCSGEKTR----SYIKIQDGCDCYCSYCIIPYARGHVR 169

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           S+ +  VV EA + I  G  E+ L G N+  + G+ L  E+ T +D++  +  + G  R+
Sbjct: 170 SKPMEDVVREASENIAAGHKELILTGINL-CFYGRDLS-ERPTLTDVVEKVCSLDGEFRV 227

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R  +  P  M    IK    LD L P+ HL +QSG D  LK+MNRR+ +  Y  +   IR
Sbjct: 228 RLGSIEPEMMLADDIKRLSVLDKLCPHFHLSLQSGCDSTLKNMNRRYDSSGYASLCATIR 287

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           +  PD A+++D +VGFPGE +  F  ++  V++I +A+A  F YS R GT   +  +QV 
Sbjct: 288 NYFPDCALTTDIMVGFPGEDEKAFEESLSFVEEIAFAEAHIFPYSRRAGTKADSFTDQVP 347

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN-- 441
           +++K ER   + +   E +  F   CVG++ +VL E+   E     G +P   +V +   
Sbjct: 348 QHIKHERAKRMAEVCAESKSGFLAGCVGKVFDVLFERE-TEADWHSGHAPNYVTVKVKRN 406

Query: 442 -SKNHNIGDIIKVRITDVKISTLYGELV 468
              +     I KVRI        YGE V
Sbjct: 407 SPSDSLRRQIRKVRIISSDKEVCYGEFV 434


>gi|94984483|ref|YP_603847.1| hypothetical protein Dgeo_0375 [Deinococcus geothermalis DSM 11300]
 gi|123079979|sp|Q1J1F6|RIMO_DEIGD RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|94554764|gb|ABF44678.1| SSU ribosomal protein S12P methylthiotransferase [Deinococcus
           geothermalis DSM 11300]
          Length = 485

 Score =  345 bits (885), Expect = 9e-93,   Method: Composition-based stats.
 Identities = 124/478 (25%), Positives = 211/478 (44%), Gaps = 38/478 (7%)

Query: 15  SQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIRE 74
           +Q     +   +    S GC   + DS R+     ++GYE   + +DA  +++NTC    
Sbjct: 4   TQEPLPTVAAPKVGFISLGCPKALVDSERILTQLRAEGYEVAPNYEDAQAVIVNTCGFIT 63

Query: 75  KAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYY 134
            A E+  S +G   +             V+V GC+ +   E+IL R P V  + G +   
Sbjct: 64  PAVEESLSAIGEALDATGK---------VIVTGCLGER-PEKILERHPKVAAITGSEAVD 113

Query: 135 RLPELLERARFGKRVVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDKFCTF 192
            +   +      +    T               +           A++ I EGC+  C+F
Sbjct: 114 DVMAHVRELLPIELDPFTGLLPVAAPGMRQGDTLAPSVKLTPRHYAYVKIAEGCNHTCSF 173

Query: 193 CVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA------WRGKGLDGE--K 244
           C++P  RG ++SR    V+ EA +LI  G  E+ ++ Q+ +A       R     GE  +
Sbjct: 174 CIIPKLRGRQVSRDAGAVLYEAYRLIAGGTKELMIISQDTSAYGVDLRHRTSEFQGEQVR 233

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304
               DL   L E+   VR+ Y   +P       + + G    ++PYL +P+Q  S  +LK
Sbjct: 234 AHLIDLAEKLGEMGAWVRMHYVYPYPHVERIVELMSQG---KILPYLDVPLQHASPAVLK 290

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
            M R   A +    I R R + P++ I S FIVGFPGET++DF+  +D +++    +  +
Sbjct: 291 RMRRPG-AGKQLDTIRRWREICPELVIRSTFIVGFPGETEEDFQLLLDFLEEARLDRVGA 349

Query: 365 FKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE 424
           F YS       + +   + E VK ERL    +  +          VG++++V+I++   +
Sbjct: 350 FTYSDVEEADANALDGAIPEEVKQERLARFMEVAQRISREKLAEKVGRVLDVIIDEFNDD 409

Query: 425 KG-----KLVGRS----PWLQSVVL-----NSKNHNIGDIIKVRITDVKISTLYGELV 468
           +G     +L+GR+    P +   V       +    IGDI++ RI D     LYGE++
Sbjct: 410 EGDEPGTRLIGRTKGDAPGIDGQVYLYAGDFAGQVKIGDIVQARIEDSDEYDLYGEVI 467


>gi|209965481|ref|YP_002298396.1| hypothetical protein RC1_2196 [Rhodospirillum centenum SW]
 gi|209958947|gb|ACI99583.1| conserved hypothetical protein [Rhodospirillum centenum SW]
          Length = 458

 Score =  345 bits (885), Expect = 9e-93,   Method: Composition-based stats.
 Identities = 132/441 (29%), Positives = 213/441 (48%), Gaps = 32/441 (7%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V ++GC++N Y+S  M     + G +        D++++NTC +  +A  +    + R+R
Sbjct: 46  VVTFGCRLNSYESEVMRAHARTAGLD--------DVVIVNTCAVTAEAERQARQAIRRLR 97

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE-RARFGK 147
                  ++     +VV GC AQ   +        V+ V+G           E      +
Sbjct: 98  -------RDRPGAKIVVTGCAAQVNPDGFAA-MGEVDHVLGNDAKLTESAWTEFGVGASE 149

Query: 148 RV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           RV V+   SV +    L  + G   R R   AF+ +Q GCD  CTFC++P+ RG   S  
Sbjct: 150 RVRVNDIMSVRETASHL--IQGMEGRAR---AFVQVQNGCDHRCTFCIIPFGRGNSRSVP 204

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
           + +VV + R L+++G  E+ L G ++ +  G  L G       +   L+ +  L RLR +
Sbjct: 205 MGEVVAQVRTLLESGYREVVLTGVDITS-YGADLPGTPALGQMVRRLLAAVPELPRLRLS 263

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
           +    +M D L +   + + LMP+LHL +Q+G D +LK M RRHT  +  +  ++ R +R
Sbjct: 264 SLDAVEMDDDLWRLVAEEERLMPHLHLSLQAGDDMVLKRMKRRHTRDDAIRFCEKARGLR 323

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           PDI   +D I GFP ETD  F  ++ +V++ G      F YS R GTP + M  QV   V
Sbjct: 324 PDIVFGADIIAGFPTETDAMFENSLRIVEECGLTWLHVFPYSARPGTPAAKMP-QVPVPV 382

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHN 446
           + ER   L+   +     +  A VG+   VL+E+ G      +GR+P    V L+   H 
Sbjct: 383 RKERAARLRAAGQVAVDRYLAAQVGRTAGVLVERAG------LGRTPGFAEVRLDGT-HA 435

Query: 447 IGDIIKVRITDVKISTLYGEL 467
            G +I+ R+T V  + L   +
Sbjct: 436 PGSLIRCRLTGVDGTMLTAVV 456


>gi|77919453|ref|YP_357268.1| putative MiaB-like tRNA modifying enzyme [Pelobacter carbinolicus
           DSM 2380]
 gi|77545536|gb|ABA89098.1| putative MiaB-like tRNA modifying enzyme [Pelobacter carbinolicus
           DSM 2380]
          Length = 432

 Score =  345 bits (885), Expect = 9e-93,   Method: Composition-based stats.
 Identities = 124/442 (28%), Positives = 209/442 (47%), Gaps = 18/442 (4%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           F + + GC+ N ++S  M +     GY R++    ADL+++NTC +      +  + + R
Sbjct: 5   FAIVTLGCKTNQFESAAMAEQLEQAGYRRIDYSAGADLVIVNTCTVTAATDSQSRNLIRR 64

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
            R L            VVV GC AQ +   + +  P V+ V+G +    L   L+     
Sbjct: 65  ARRL-------NPACRVVVTGCYAQIDPAAV-QNLPGVDRVLGNEEKSELLHWLDADGPK 116

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
            +V D   +    F+  +             AF+ IQ GC+ FC++C++P+ RG   S  
Sbjct: 117 VQVGDIRQARGVTFDLNA-------FGSRSRAFVQIQNGCNAFCSYCIIPHARGPSRSAL 169

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
             QVVD+  K    G  EI L G ++    G  L     + +DL+  L +   + RLR  
Sbjct: 170 PQQVVDQVCKFCTAGFPEIVLTGIHIGG-YGNDLQP-PLSLADLVRRLLDDTQVSRLRLG 227

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
           +  P+++S  LI      + L P+ H+P+Q+G D +LK+MNR ++  ++R +++ I+   
Sbjct: 228 SIEPQEVSMELIDLVAHCERLCPHFHIPLQAGDDAVLKAMNRHYSVKDFRNLVEGIKLRV 287

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           P  AI  D I GFPGET++ F  T+ LV  +       F +S R GTP + M  Q+   V
Sbjct: 288 PQAAIGLDIITGFPGETENAFANTLALVRDLPVTHLHVFPFSKRPGTPAATMRHQISGTV 347

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHN 446
             +R   L+     +Q  +    +G+ ++V++E   K+  K  G S     V  ++ +H 
Sbjct: 348 ARQRAAELRALGEGKQAEYARGFIGKNLQVVVEG-SKQGSKRHGLSVHYLPVEFDTDDHW 406

Query: 447 IGDIIKVRITDVKISTLYGELV 468
                 V +   +  TL G+L+
Sbjct: 407 NQRTATVCVETTRQGTLLGKLI 428


>gi|332292790|ref|YP_004431399.1| MiaB-like tRNA modifying enzyme [Krokinobacter diaphorus 4H-3-7-5]
 gi|332170876|gb|AEE20131.1| MiaB-like tRNA modifying enzyme [Krokinobacter diaphorus 4H-3-7-5]
          Length = 447

 Score =  345 bits (885), Expect = 9e-93,   Method: Composition-based stats.
 Identities = 120/441 (27%), Positives = 209/441 (47%), Gaps = 14/441 (3%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
            ++    + GC++N  ++  +   F  +G+++V   + AD+ V+NTC + E A +     
Sbjct: 4   KKKVAFYTLGCKLNFSETSTIARSFGQEGFDKVEFSEPADVYVINTCSVTENADK----- 58

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
             R +++     K   + + V  GC AQ + EE+      V++V+G    + +   +   
Sbjct: 59  --RFKSIVKQAQKVNPEGVTVAVGCYAQLKPEELADVD-GVDLVLGATEKFNVTSYINDL 115

Query: 144 RFG-KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
                R  +       + +        Y+      AFL +Q+GCD  CT+C +P  RGI 
Sbjct: 116 LDNPDRSKEGGEVHACEIQDADFYVSSYSIGDRTRAFLKVQDGCDYKCTYCTIPLARGIS 175

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK---CTFSDLLYSLSEIKG 259
            S +L  V+D A K+    + EI L G N+    GKG  G K    TF +L+  L +++G
Sbjct: 176 RSDTLQNVLDNASKIAAQDIKEIVLTGVNIG-DYGKGEFGNKKHEHTFLELVQELDKVEG 234

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           + RLR ++  P  + +  I         +P+ H+P+QSGS++IL  M RR+    Y   +
Sbjct: 235 IERLRISSIEPNLLKNETIDVVSKSRTFVPHFHIPLQSGSNKILGLMRRRYQRELYVDRV 294

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            +I+ V P   I  D IVGFPGETD+DF  T + +  +  +    F YS R  TP + M 
Sbjct: 295 AKIKEVMPQACIGVDVIVGFPGETDEDFLETYNFLTGLDISYLHVFTYSERDNTPAATME 354

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV 439
            +V + V+++R   L+    + + +F ++ +  +  VL E   KE G + G +     V 
Sbjct: 355 GEVPKKVRSKRSKMLRGLSAKMRRAFYESQLNSMRTVLFESENKE-GYIHGFTENYVKVK 413

Query: 440 LNSKNHNIGDIIKVRITDVKI 460
                  +  + +V +T +  
Sbjct: 414 SPWNPELVNTLHEVELTSIDD 434


>gi|224537220|ref|ZP_03677759.1| hypothetical protein BACCELL_02097 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224521143|gb|EEF90248.1| hypothetical protein BACCELL_02097 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 337

 Score =  345 bits (885), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 128/334 (38%), Positives = 192/334 (57%), Gaps = 5/334 (1%)

Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
           P+L+     G++ ++ + S  + +  +       N   G   F++I  GC+ FCT+C+VP
Sbjct: 6   PDLVAAVEAGEKAINVELSTTETYRDVIPSRICGNHISG---FVSIMRGCNNFCTYCIVP 62

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256
           YTRG E SR +  +++E   L+  G  E+TLLGQNVN++R +  +GE  TF  LL +++E
Sbjct: 63  YTRGRERSRDVESILNEVSDLVAKGYKEVTLLGQNVNSYRFEKPNGEVVTFPMLLRTVAE 122

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
               VR+R+TTSHP+DMSD  ++    +  +  ++HLPVQSGS RILK MNR++T   Y 
Sbjct: 123 AAPGVRVRFTTSHPKDMSDETLEVIAQVPNVCKHIHLPVQSGSSRILKLMNRKYTREWYL 182

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
             +D I  + PD  +S+D   GF  ET++D + ++ L++K  Y  AF FKYS R GT  S
Sbjct: 183 DRVDAIHRIVPDCGLSTDIFSGFHSETEEDHQLSLSLMEKCAYDSAFMFKYSERPGTYAS 242

Query: 377 N-MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPW 434
             + + V E VK  RL  +           N  C+G+  EVL+E   K    +LVGR+  
Sbjct: 243 KHLPDDVPEEVKIRRLNEIIALQNRLSAESNARCIGKTYEVLVEGVSKRSREQLVGRTEQ 302

Query: 435 LQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            + VV +   H IGD + V+IT+   +TL GE V
Sbjct: 303 NRVVVFDRGTHRIGDFVMVKITEASSATLKGEEV 336


>gi|289449689|ref|YP_003474403.1| MiaB-like protein [Clostridiales genomosp. BVAB3 str. UPII9-5]
 gi|289184236|gb|ADC90661.1| MiaB-like protein [Clostridiales genomosp. BVAB3 str. UPII9-5]
          Length = 463

 Score =  345 bits (885), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 134/474 (28%), Positives = 225/474 (47%), Gaps = 29/474 (6%)

Query: 9   GVAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLN 68
           G  +++  +V     P    + + GC++N Y++  +   F + GYE V+    AD+ VLN
Sbjct: 4   GQENILGNMVQGEKRP-TVALFNLGCKVNRYETDAVAQQFATAGYEVVDFDSVADIYVLN 62

Query: 69  TCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVV 128
           TC +  +A  K    L R R       K+    +V V GC  Q  GE         ++VV
Sbjct: 63  TCAVTGEAGRKSGQMLRRAR-------KKNPAAVVAVMGCHVQLGGE-----CSAADIVV 110

Query: 129 GPQTYYRLPELLERAR----FGKRVVDTDYSVEDKFERLSIVDGG-------YNRKRGVT 177
           G Q   R+   +E  R          D   +  D  + L++ D          +++    
Sbjct: 111 GTQGKKRVFAAVEHFRAEWAEHNFAADARPARLDMIQTLALADAPDFEDFGAVDQQSETR 170

Query: 178 AFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG 237
           A++ IQ+GC+ FC++C +P+ RG   SRS   ++ E R +   G  E+ + G +V +  G
Sbjct: 171 AYIKIQDGCNNFCSYCAIPFARGRVRSRSEESILREGRGIAAAGFKEVVITGIHVCS-YG 229

Query: 238 KGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQS 297
           +         + L   L+E+ GL R+R  +  P  +S   I+A      L P+ HL +QS
Sbjct: 230 RDRGESSTALTSLCAKLAELPGLERIRLGSLEPLSVSAAFIEAASANPKLCPHFHLSLQS 289

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPD-IAISSDFIVGFPGETDDDFRATMDLVDK 356
           GSD +L+ M RR+T   YRQ+++ +R+   + + +++D IVGFPGET+ +F  T+    +
Sbjct: 290 GSDTVLRRMRRRYTTENYRQVVNGLRAAYGERLGLTTDIIVGFPGETEAEFAETVAFCRE 349

Query: 357 IGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEV 416
           + + +   F+YS R GT  +    +V+ +V A R   L K   E Q +      G+   V
Sbjct: 350 MSFTRMHIFRYSERAGTAATQFEGKVEASVAAYRAEELAKVAAELQAAHQARRQGKNDLV 409

Query: 417 LIEKHGKEKGKLVGRSPWLQSVV--LNSKNHNIGDIIKVRITDVKISTLYGELV 468
           L+E+  KE G   G +P    +V   ++     G II VR+  ++     G  +
Sbjct: 410 LLEQRDKE-GYFEGYAPNYDPIVLGFDTSELKSGLIIPVRLIGIRNGRFIGRPL 462


>gi|300312296|ref|YP_003776388.1| 2-methylthioadenine synthetase [Herbaspirillum seropedicae SmR1]
 gi|300075081|gb|ADJ64480.1| 2-methylthioadenine synthetase protein [Herbaspirillum seropedicae
           SmR1]
          Length = 458

 Score =  345 bits (885), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 122/479 (25%), Positives = 201/479 (41%), Gaps = 50/479 (10%)

Query: 13  MVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHI 72
           M +          +    S GC   + DS ++     ++GY+   S D ADL+++NTC  
Sbjct: 1   MSNPSSPATPALPKVGFVSLGCPKALVDSEQILTQLRAEGYDTAKSYDGADLVIVNTCGF 60

Query: 73  REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEE----ILRRSPIVNVVV 128
            + A ++    +G              +  V+V GC+   +  E    I +  P V  V 
Sbjct: 61  IDAAVQESLDAIGEA---------LNENGKVIVTGCLGAKKDAEGDDIIQKIHPKVLEVT 111

Query: 129 GPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
           GP     + + + +          D           +   G        A+L I EGC+ 
Sbjct: 112 GPHAVGEVMQAVHKHLPKPHAPFIDL----------VPPQGVKLTPKHFAYLKISEGCNH 161

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDG 242
            C+FC++P  RG  +SR ++ V+ EA  L   GV E+ ++ Q+ +A+      R    +G
Sbjct: 162 RCSFCIIPSMRGDLVSRPIADVMLEAENLFKAGVKELLVISQDTSAYGVDVKFRTGFWNG 221

Query: 243 E--KCTFSDLLYSLSEI----KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQ 296
           +  K   + L+ +L E+       VRL Y   +P       + A G    ++PYL +P+Q
Sbjct: 222 KPVKTHMTQLVGALGELAQQYGAWVRLHYVYPYPHVDQIIPMMAEG---KILPYLDVPLQ 278

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
                +LK M R     +  + I   R++ PD+ I S FI GFPGET+ +F   +D + +
Sbjct: 279 HAHPDVLKRMKRPANGEKNIERIQAWRAMCPDLTIRSTFIAGFPGETEAEFEYLLDFLKE 338

Query: 357 IGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEV 416
               +   F YSP  G   + +   V E V+ ER   + +   E       A VG+ + V
Sbjct: 339 AEIDRLGCFAYSPVEGATANEIANPVPEEVREERRGRVMQLQEEISKKRLQAKVGKTLRV 398

Query: 417 LIEKHGKEKGKLVGRS----PWLQSVVLNSKN------HNIGDIIKVRITDVKISTLYG 465
           LI++  +  G   GR+    P +  VV             +G  + VRIT      L+G
Sbjct: 399 LIDEVDRNGG--TGRTYSDAPEIDGVVYVKPPFEPHRKLEVGQFVDVRITAADAHDLWG 455


>gi|41055309|ref|NP_956921.1| CDK5 regulatory subunit-associated protein 1-like 1 [Danio rerio]
 gi|82187245|sp|Q6PG34|CDKAL_DANRE RecName: Full=CDK5 regulatory subunit-associated protein 1-like 1
 gi|34784048|gb|AAH57248.1| CDK5 regulatory subunit associated protein 1-like 1 [Danio rerio]
          Length = 547

 Score =  345 bits (885), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 117/464 (25%), Positives = 209/464 (45%), Gaps = 33/464 (7%)

Query: 15  SQIVDQCIVP--QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHI 72
            Q+    ++P  Q+ ++K++GC  N  D   M       GY+      DADL +LN+C +
Sbjct: 47  EQMQTDSVIPGMQKVWLKTWGCSHNSSDGEYMAGQLAVAGYQITEDSSDADLWLLNSCTV 106

Query: 73  REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT 132
           +  A +   + + + +              VV+AGCV QA+      +      ++G Q 
Sbjct: 107 KSPAEDHFRNAIRKAQEQNKK---------VVLAGCVPQAQPRMDYIKD---LSIIGVQQ 154

Query: 133 YYRLPELLERARFGKRVVDTDYSVED-KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCT 191
             R+ E+++ A  G  V       E  K    + +D    RK  +   ++I  GC   CT
Sbjct: 155 IDRVVEVVDEAIKGHSVRLLGQKKEKGKRLGGARLDLPKIRKNPLIEIISINTGCLNACT 214

Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLL 251
           +C   + RG   S  + ++V+  R+    GVCEI L  ++  A  G+ +  +  T   L 
Sbjct: 215 YCKTKHARGDLASYPVEELVERVRQSFQEGVCEIWLTSEDTGA-YGRDIGSDLPTL--LW 271

Query: 252 YSLSEIK-------GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304
             + EI        G+    Y   H  +MS  L         +  +LH+P+QS SD +L 
Sbjct: 272 RLVEEIPEGAMLRLGMTNPPYILEHLEEMSRIL-----QHPRVFSFLHVPLQSASDSVLM 326

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
            M R +   ++  ++D ++   P I I++D I GFPGETD+DF  T+ LV +  +   F 
Sbjct: 327 EMRREYCCADFTHLVDYLKERVPGITIATDIICGFPGETDEDFEQTLALVRRYRFPSLFI 386

Query: 365 FKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE 424
            ++ PR GTP + M +Q+  +VK +R   L            D  +G+  +VL+ +   +
Sbjct: 387 NQFYPRPGTPAALM-QQLPAHVKKQRTKELSALF--HSYRPYDHKMGEQQQVLVTEESFD 443

Query: 425 KGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
               V  + + + V++  +   +G +++V + +     + G  +
Sbjct: 444 SQYYVAHNKFYEQVLVPKRPEYLGKMVQVEVYECGKHYMKGRPL 487


>gi|254486066|ref|ZP_05099271.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Roseobacter sp.
           GAI101]
 gi|214042935|gb|EEB83573.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Roseobacter sp.
           GAI101]
          Length = 456

 Score =  345 bits (885), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 117/469 (24%), Positives = 202/469 (43%), Gaps = 34/469 (7%)

Query: 10  VAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNT 69
           +A                 + S GC   + DS R+     ++GY        AD +++NT
Sbjct: 12  LAPQAKISTPSRPGQPTIGMVSLGCPKALVDSERILTRLRAEGYGVSPDYAGADAVIVNT 71

Query: 70  CHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG 129
           C   + A  +    +G    LK +         V+V GC+  AE + I    P +  V G
Sbjct: 72  CGFLDSAKAESLDAIGEA--LKENGR-------VIVTGCLG-AEPDYIREHHPRILAVTG 121

Query: 130 PQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKF 189
           P  Y ++ + +  A              D F  L          R   ++L I EGC+  
Sbjct: 122 PHQYEQVLDAVHAA---------VPPSPDPFIDLLPAQAVSLTPRHY-SYLKISEGCNHK 171

Query: 190 CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-----GEK 244
           C FC++P  RG   SR    ++ EA KL+  GV E+ ++ Q+ +A  G  +      G +
Sbjct: 172 CKFCIIPDMRGRLQSRPAHAILREAEKLVQGGVKELLVISQDTSA-YGVDIKHAEDRGHR 230

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304
              +DL   L  +   VRL Y   +P   +   + A G   +++PYL +P Q     +LK
Sbjct: 231 AHITDLARDLGSLGAWVRLHYVYPYPHVRNLIPLMADG---LVLPYLDIPFQHAHPDVLK 287

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
            M R   A +    I   R   PDI + S FIVG+PGET+ +F+  +D +D+    +   
Sbjct: 288 RMARPAAAAKTLDEIAAWRDTCPDITLRSTFIVGYPGETEAEFQTLLDWLDEAQLDRVGC 347

Query: 365 FKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE 424
           F+Y    G   + + + V + VK +R     +K +    +  +A VG+ ++V+I++   +
Sbjct: 348 FQYENVDGARSNALPDHVPDEVKQDRWNRFMEKAQAISEAKLEAKVGRRMDVIIDEIDGD 407

Query: 425 KG--KLVGRSPWLQSVVLNS---KNHNIGDIIKVRITDVKISTLYGELV 468
               +    +P +   +      +  ++GDI+ V + +     L+G +V
Sbjct: 408 AATCRTKADAPEIDGNLFIDEGFEGLSVGDIVTVEVEEAGEYDLWGRVV 456


>gi|167772333|ref|ZP_02444386.1| hypothetical protein ANACOL_03710 [Anaerotruncus colihominis DSM
           17241]
 gi|167665436|gb|EDS09566.1| hypothetical protein ANACOL_03710 [Anaerotruncus colihominis DSM
           17241]
          Length = 441

 Score =  345 bits (885), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 124/444 (27%), Positives = 202/444 (45%), Gaps = 20/444 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    + GC++N Y++  +   F   GYE V     AD+ V+N+C +     +K    L 
Sbjct: 2   KAAFYTLGCKVNQYEAQILAQQFADAGYEIVPPEAPADVYVVNSCTVTASGDQKTRRVLR 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R R L         D  VV+ GC  QA  ++   R    +V+ G +    L EL+ RAR 
Sbjct: 62  RFRTLC-------PDATVVLTGCYPQAFPDD-AARLAEADVIAGARDRAALVELVRRARE 113

Query: 146 --GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             G+ V    +   + FE +         +    AF+ I++GCD++C +C++P  RG   
Sbjct: 114 TRGRIVAVAPHERGEPFEPMRAA----AFRERTRAFVKIEDGCDRYCAYCIIPQARGPVR 169

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           S+   ++  E   L   G  E  L+G N+ +  G+ L        D +     + G+ R+
Sbjct: 170 SKPPGELRAELEGLARAGYREAVLVGINLPS-YGREL---GLRLIDAVELACAVGGIERV 225

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R  +  P  ++D  I        L P  HL +QSG D  L  M R +   EY +I+  +R
Sbjct: 226 RLGSLEPELLTDDDIARMARQPKLCPQFHLSLQSGCDATLARMRRHYDTAEYMRIVRALR 285

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           +   + AI++D +VGFPGETD +F  ++  V+ +G A+A  F YS R GT  ++M  Q+ 
Sbjct: 286 AHFENCAITTDVMVGFPGETDAEFGQSLCFVESLGLAKAHVFAYSRRPGTRAADMPGQLP 345

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
             VK  R   + +     + +F     G+ + VL E   ++ G   G +     V + + 
Sbjct: 346 GAVKEARSARMIEATDRTRAAFLAGQAGRTVGVLFE--TRDGGAFDGYAENYTPVRVFTD 403

Query: 444 NHNIGDIIKVRITDVKISTLYGEL 467
               G I +V IT    +   G L
Sbjct: 404 EDLRGQIRRVLITSADGARCVGTL 427


>gi|218296361|ref|ZP_03497104.1| MiaB-like tRNA modifying enzyme YliG [Thermus aquaticus Y51MC23]
 gi|218243155|gb|EED09686.1| MiaB-like tRNA modifying enzyme YliG [Thermus aquaticus Y51MC23]
          Length = 434

 Score =  345 bits (885), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 129/458 (28%), Positives = 211/458 (46%), Gaps = 47/458 (10%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC   + DS ++     + GYE   S ++A+L+++NTC     A E+  + +G
Sbjct: 3   KIGFVSLGCPKALVDSEQILSRLRALGYETSPSYEEAELVIVNTCGFITPAVEESLATIG 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                            VVV GC+     E I    P V  V GP    R+ E+++    
Sbjct: 63  EALKANGK---------VVVTGCLGAR-PEVIREAHPQVLAVTGPGEVERVLEVVQAVLP 112

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
             R              L ++           A++ + EGCD  C+FC++P  RG   SR
Sbjct: 113 APR-----------DPFLDLIPPQVKLTPRHYAYIKLSEGCDHRCSFCIIPQLRGRLRSR 161

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE---------KCTFSDLLYSLSE 256
             ++V+ EA +L   G  E+ L+ Q+++A  G  L            +    DLL +++E
Sbjct: 162 DAAEVLAEAYRLAATGTKELLLIAQDLSA-YGVDLGHRESFFGDRLVRAHLKDLLENMAE 220

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           +   +RL Y   +P      L+    +   ++PYL +P+Q  S+RIL+ M R      + 
Sbjct: 221 LGVWIRLHYVYPYPHV--KDLLPLMAE-GKVLPYLDVPLQHASERILRLMRRPGGYGSHL 277

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
           + +   R V P++A+ S FIVGFPGET++DF+  +D +++    +  +F YSP  G   +
Sbjct: 278 KTLKAWREVVPELAVRSTFIVGFPGETEEDFQILLDFLEEAELDRVGAFTYSPVEGAEAN 337

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS---- 432
            + + V E VK ERL  L +      +  N   VG+++EVL+++   E G  VGRS    
Sbjct: 338 LLPDPVPEEVKEERLFRLMELQARISLRKNQGFVGRVLEVLVDEL-PEPGLAVGRSYRDA 396

Query: 433 PWLQSVVLNSKNHNIGD-----IIKVRITDVKISTLYG 465
           P +  VV    +   G       ++VRIT      L+G
Sbjct: 397 PGIDGVVYVETD---GTVRVGERVRVRITWADTHDLFG 431


>gi|160898308|ref|YP_001563890.1| ribosomal protein S12 methylthiotransferase [Delftia acidovorans
           SPH-1]
 gi|238065332|sp|A9BVZ2|RIMO_DELAS RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|160363892|gb|ABX35505.1| MiaB-like tRNA modifying enzyme YliG [Delftia acidovorans SPH-1]
          Length = 471

 Score =  345 bits (884), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 123/486 (25%), Positives = 196/486 (40%), Gaps = 45/486 (9%)

Query: 10  VAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNT 69
            +   +          R    S GC   + DS  +     ++GY+   + + ADL+++NT
Sbjct: 4   TSDATTMTTPAGAAAPRVGFVSLGCPKALTDSELILTQLSAEGYQTSKTFEGADLVIVNT 63

Query: 70  CHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEE----ILRRSPIVN 125
           C   + A  +    +G                 V+V GC+    G++    I    P V 
Sbjct: 64  CGFIDDAVRESLDTIGEALAENGK---------VIVTGCLGAKAGKDGGNLIQEVHPSVL 114

Query: 126 VVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEG 185
            V GP     +   +            D       E       G        A+L I EG
Sbjct: 115 AVTGPHATQEVMNAVHTHLPKPHDPFIDLVPGAFGE------AGIKLTPRHYAYLKISEG 168

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKG 239
           C+  CTFC++P  RG  +SR +  V+ EAR L + GV E+ ++ Q+ +A+      R   
Sbjct: 169 CNHRCTFCIIPSMRGDLVSRPVGDVLKEARALFEGGVKELLVISQDTSAYGVDVKYRTGF 228

Query: 240 LDGE--KCTFSDLLYSLSEI----KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHL 293
            DG+  K    +L+ +L+EI       VRL Y   +P         A G    ++PYL +
Sbjct: 229 WDGKPVKTRMLELVQTLAEIAEPYGAWVRLHYVYPYPSVDEIIPFMATG---RVLPYLDV 285

Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
           P Q     +LK M R        + + R R + PD+ I S FI GFPGET+ +F   +  
Sbjct: 286 PFQHSHPDVLKRMKRPANGERNLERLQRWREICPDLVIRSTFIAGFPGETEQEFEHLLQF 345

Query: 354 VDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQI 413
           + +    +A  F YSP  G   + +   +   V+ ER         E   +     VGQ 
Sbjct: 346 LREAQIDRAGCFAYSPVEGAAANEIPGMLPLEVREERRARFMAVAEEVSTARLQKRVGQT 405

Query: 414 IEVLIEK-----HGKEKGKLVGRSPWLQSVVL------NSKNHNIGDIIKVRITDVKIST 462
           ++VL++K          G+    +P +  +V        SK + +GD +K RI   +   
Sbjct: 406 MQVLVDKSVGLGKKGGVGRSYADAPEIDGLVHLLPPEKASKTYKVGDFVKARIVGTQGHD 465

Query: 463 LYGELV 468
           L G+ V
Sbjct: 466 LVGQPV 471


>gi|83943879|ref|ZP_00956336.1| RNA modification enzyme, MiaB-family protein [Sulfitobacter sp.
           EE-36]
 gi|83845126|gb|EAP83006.1| RNA modification enzyme, MiaB-family protein [Sulfitobacter sp.
           EE-36]
          Length = 426

 Score =  345 bits (884), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 116/450 (25%), Positives = 199/450 (44%), Gaps = 34/450 (7%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           + S GC   + DS R+     ++GY        AD +++NTC   + A  +    +G   
Sbjct: 1   MVSLGCPKALVDSERILTRLRAEGYGVSPDYAGADAVIVNTCGFLDSAKAESLDAIGEA- 59

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
                      +  V+V GC+  AE + I    P +  V GP  Y ++ + +  A     
Sbjct: 60  --------LNENGKVIVTGCLG-AEPDYIREHHPRILAVTGPHQYEQVLDAVHGA----- 105

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
                    D F  L          R   ++L I EGC+  C FC++P  RG   SR   
Sbjct: 106 ----VPPSPDPFIDLLPAQAVSLTPRHY-SYLKISEGCNHKCKFCIIPDMRGRLQSRPAH 160

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-----GEKCTFSDLLYSLSEIKGLVRL 263
            ++ EA KL+ NGV E+ ++ Q+ +A  G  +      G +   +DL   L  +   VRL
Sbjct: 161 AILREAEKLVQNGVNELLVISQDTSA-YGVDIKHAEDRGHRAHITDLARDLGSLGAWVRL 219

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
            Y   +P   +   + A G   +++PYL +P Q     +LK M R   A +    I   R
Sbjct: 220 HYVYPYPHVRNLIPLMAEG---LVLPYLDIPFQHAHPDVLKRMARPAAAAKTLDEIAAWR 276

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              PDI + S FIVG+PGET+ +F+  +D +D+    +   F+Y    G   + + + V 
Sbjct: 277 DTCPDITLRSTFIVGYPGETEAEFQTLLDWLDEAQLDRVGCFQYENVDGARSNALPDHVP 336

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG--KLVGRSPWLQSVVLN 441
           + VK +R     +K +    +  +A VG+ ++V+I++   E    +    +P +   +  
Sbjct: 337 DEVKQDRWNRFMEKAQAISAAKLEAKVGRRMDVIIDEIDDEAATCRTKADAPEIDGNLFI 396

Query: 442 S---KNHNIGDIIKVRITDVKISTLYGELV 468
               +N ++G I+ V + +     L+G +V
Sbjct: 397 DEGFENLSVGQIVTVEVEEAGEYDLWGRVV 426


>gi|188996614|ref|YP_001930865.1| MiaB-like tRNA modifying enzyme YliG [Sulfurihydrogenibium sp.
           YO3AOP1]
 gi|238066611|sp|B2V8N8|RIMO_SULSY RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|188931681|gb|ACD66311.1| MiaB-like tRNA modifying enzyme YliG [Sulfurihydrogenibium sp.
           YO3AOP1]
          Length = 430

 Score =  345 bits (884), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 115/450 (25%), Positives = 207/450 (46%), Gaps = 35/450 (7%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC  N+ D+  +      +      + ++AD+I++NTC   E A E+    + 
Sbjct: 5   KINFISLGCPKNLVDTEVLIGKLNQENISFTANPEEADVILINTCGFIEPAKEESIETIL 64

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
               LK +  K      ++V GC+ +   +E+ +  P V+  +  +   ++P        
Sbjct: 65  EAVKLKQNSNK-----KIIVTGCLVERYKQELEKEIPEVDYFIDLKNQSQIP-------- 111

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
               V  D   ++  +R+             TA+L I EGCD  C+FC +P  RG   S+
Sbjct: 112 ----VLFDIKPKENTKRIISTPKH-------TAYLKISEGCDHTCSFCAIPNIRGKHRSK 160

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            +  +V+EA+ L + GV E+ ++ Q+  ++ G  L G+   F +LL  L +I G+  +R 
Sbjct: 161 PIEALVEEAKYLANLGVKELNIVSQDT-SYYGYDLYGKPMLF-ELLQHLEKIDGIKWIRL 218

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
              +P  + +   K     + ++ Y+ +P+Q   D+ILK M R +   +  QI++     
Sbjct: 219 YYLYPSTVDEDFFKFIKGSEKILHYIEMPIQHSEDKILKDMMRGYRKKKLYQILEWKEKY 278

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQVDE 384
            PD+ I S  IVG+P ET++DF    + + +  +     F YS   GTP      +++ +
Sbjct: 279 TPDMTIRSSVIVGYPTETEEDFENMKNFIQEAQFDWLGVFVYSHEEGTPAYQKHKDKIPK 338

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL-VGRSP----WLQSVV 439
             K  RL  +           N + +G+ ++++I+   +E   L +GRS      +   V
Sbjct: 339 KEKIRRLNEISALQENITEQKNKSLIGKELDIIIDGFSEEWETLPIGRSYRSAFEIDGAV 398

Query: 440 L--NSKNHNIGDIIKVRITDV-KISTLYGE 466
               ++  N+GDIIKVRI D      + GE
Sbjct: 399 YVETTEPVNVGDIIKVRIKDTIDKYDVVGE 428


>gi|17989048|ref|NP_541681.1| ribosomal protein S12 methylthiotransferase [Brucella melitensis
           bv. 1 str. 16M]
 gi|23500310|ref|NP_699750.1| ribosomal protein S12 methylthiotransferase [Brucella suis 1330]
 gi|62317576|ref|YP_223429.1| ribosomal protein S12 methylthiotransferase [Brucella abortus bv. 1
           str. 9-941]
 gi|83269558|ref|YP_418849.1| ribosomal protein S12 methylthiotransferase [Brucella melitensis
           biovar Abortus 2308]
 gi|161620628|ref|YP_001594514.1| MiaB-like tRNA modifying enzyme YliG [Brucella canis ATCC 23365]
 gi|163844718|ref|YP_001622373.1| MiaB-like tRNA modifying enzyme YliG [Brucella suis ATCC 23445]
 gi|189022831|ref|YP_001932572.1| elongator protein 3 [Brucella abortus S19]
 gi|225629061|ref|ZP_03787094.1| MiaB-like tRNA modifying enzyme YliG [Brucella ceti str. Cudo]
 gi|225686353|ref|YP_002734325.1| ribosomal protein S12 methylthiotransferase [Brucella melitensis
           ATCC 23457]
 gi|237817125|ref|ZP_04596117.1| MiaB-like tRNA modifying enzyme YliG [Brucella abortus str. 2308 A]
 gi|254691075|ref|ZP_05154329.1| MiaB-like tRNA modifying enzyme YliG [Brucella abortus bv. 6 str.
           870]
 gi|254695619|ref|ZP_05157447.1| MiaB-like tRNA modifying enzyme YliG [Brucella abortus bv. 3 str.
           Tulya]
 gi|254698860|ref|ZP_05160688.1| MiaB-like tRNA modifying enzyme YliG [Brucella abortus bv. 2 str.
           86/8/59]
 gi|254699805|ref|ZP_05161633.1| MiaB-like tRNA modifying enzyme YliG [Brucella suis bv. 5 str. 513]
 gi|254702941|ref|ZP_05164769.1| MiaB-like tRNA modifying enzyme YliG [Brucella suis bv. 3 str. 686]
 gi|254705940|ref|ZP_05167768.1| MiaB-like tRNA modifying enzyme YliG [Brucella pinnipedialis
           M163/99/10]
 gi|254711165|ref|ZP_05172976.1| MiaB-like tRNA modifying enzyme YliG [Brucella pinnipedialis B2/94]
 gi|254732307|ref|ZP_05190885.1| MiaB-like tRNA modifying enzyme YliG [Brucella abortus bv. 4 str.
           292]
 gi|256015342|ref|YP_003105351.1| MiaB-like tRNA modifying enzyme YliG [Brucella microti CCM 4915]
 gi|256029546|ref|ZP_05443160.1| MiaB-like tRNA modifying enzyme YliG [Brucella pinnipedialis
           M292/94/1]
 gi|256043459|ref|ZP_05446388.1| MiaB-like tRNA modifying enzyme YliG [Brucella melitensis bv. 1
           str. Rev.1]
 gi|256256260|ref|ZP_05461796.1| MiaB-like tRNA modifying enzyme YliG [Brucella abortus bv. 9 str.
           C68]
 gi|256262509|ref|ZP_05465041.1| elongator protein 3 [Brucella melitensis bv. 2 str. 63/9]
 gi|260167364|ref|ZP_05754175.1| MiaB-like tRNA modifying enzyme YliG [Brucella sp. F5/99]
 gi|260544814|ref|ZP_05820635.1| elongator protein 3 [Brucella abortus NCTC 8038]
 gi|260564657|ref|ZP_05835142.1| elongator protein 3 [Brucella melitensis bv. 1 str. 16M]
 gi|260568147|ref|ZP_05838616.1| elongator protein 3 [Brucella suis bv. 4 str. 40]
 gi|260756671|ref|ZP_05869019.1| conserved hypothetical protein [Brucella abortus bv. 6 str. 870]
 gi|260760102|ref|ZP_05872450.1| conserved hypothetical protein [Brucella abortus bv. 4 str. 292]
 gi|260763340|ref|ZP_05875672.1| conserved hypothetical protein [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260882488|ref|ZP_05894102.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68]
 gi|261216018|ref|ZP_05930299.1| conserved hypothetical protein [Brucella abortus bv. 3 str. Tulya]
 gi|261313369|ref|ZP_05952566.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10]
 gi|261318757|ref|ZP_05957954.1| conserved hypothetical protein [Brucella pinnipedialis B2/94]
 gi|261750275|ref|ZP_05993984.1| conserved hypothetical protein [Brucella suis bv. 5 str. 513]
 gi|261753547|ref|ZP_05997256.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686]
 gi|261756772|ref|ZP_06000481.1| elongator protein 3 [Brucella sp. F5/99]
 gi|265986555|ref|ZP_06099112.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1]
 gi|265989879|ref|ZP_06102436.1| conserved hypothetical protein [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|297249616|ref|ZP_06933317.1| MiaB-like tRNA modifying enzyme YliG [Brucella abortus bv. 5 str.
           B3196]
 gi|75495559|sp|Q577W6|RIMO_BRUAB RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|81751333|sp|Q8FW94|RIMO_BRUSU RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|81850351|sp|Q8YC29|RIMO_BRUME RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|123754492|sp|Q2YKI5|RIMO_BRUA2 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|238065297|sp|B2SB89|RIMO_BRUA1 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|238065298|sp|A9MBK6|RIMO_BRUC2 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|238065300|sp|A9WYN5|RIMO_BRUSI RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|17984890|gb|AAL53945.1| fe-s oxidoreductase [Brucella melitensis bv. 1 str. 16M]
 gi|23463922|gb|AAN33755.1| conserved hypothetical protein TIGR01125 [Brucella suis 1330]
 gi|62197769|gb|AAX76068.1| conserved hypothetical protein TIGR01125 [Brucella abortus bv. 1
           str. 9-941]
 gi|82939832|emb|CAJ12840.1| Protein of unknown function UPF0004:Conserved hypothetical protein
           1125:Elongator protein 3/MiaB/NifB:Radical SAM [Brucella
           melitensis biovar Abortus 2308]
 gi|161337439|gb|ABX63743.1| MiaB-like tRNA modifying enzyme YliG [Brucella canis ATCC 23365]
 gi|163675441|gb|ABY39551.1| MiaB-like tRNA modifying enzyme YliG [Brucella suis ATCC 23445]
 gi|189021405|gb|ACD74126.1| elongator protein 3 [Brucella abortus S19]
 gi|225615557|gb|EEH12606.1| MiaB-like tRNA modifying enzyme YliG [Brucella ceti str. Cudo]
 gi|225642458|gb|ACO02371.1| MiaB-like tRNA modifying enzyme YliG [Brucella melitensis ATCC
           23457]
 gi|237787938|gb|EEP62154.1| MiaB-like tRNA modifying enzyme YliG [Brucella abortus str. 2308 A]
 gi|255998002|gb|ACU49689.1| MiaB-like tRNA modifying enzyme YliG [Brucella microti CCM 4915]
 gi|260098085|gb|EEW81959.1| elongator protein 3 [Brucella abortus NCTC 8038]
 gi|260152300|gb|EEW87393.1| elongator protein 3 [Brucella melitensis bv. 1 str. 16M]
 gi|260154812|gb|EEW89893.1| elongator protein 3 [Brucella suis bv. 4 str. 40]
 gi|260670420|gb|EEX57360.1| conserved hypothetical protein [Brucella abortus bv. 4 str. 292]
 gi|260673761|gb|EEX60582.1| conserved hypothetical protein [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260676779|gb|EEX63600.1| conserved hypothetical protein [Brucella abortus bv. 6 str. 870]
 gi|260872016|gb|EEX79085.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68]
 gi|260917625|gb|EEX84486.1| conserved hypothetical protein [Brucella abortus bv. 3 str. Tulya]
 gi|261297980|gb|EEY01477.1| conserved hypothetical protein [Brucella pinnipedialis B2/94]
 gi|261302395|gb|EEY05892.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10]
 gi|261736756|gb|EEY24752.1| elongator protein 3 [Brucella sp. F5/99]
 gi|261740028|gb|EEY27954.1| conserved hypothetical protein [Brucella suis bv. 5 str. 513]
 gi|261743300|gb|EEY31226.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686]
 gi|263000548|gb|EEZ13238.1| conserved hypothetical protein [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|263092245|gb|EEZ16542.1| elongator protein 3 [Brucella melitensis bv. 2 str. 63/9]
 gi|264658752|gb|EEZ29013.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1]
 gi|297173485|gb|EFH32849.1| MiaB-like tRNA modifying enzyme YliG [Brucella abortus bv. 5 str.
           B3196]
 gi|326410721|gb|ADZ67785.1| elongator protein 3 [Brucella melitensis M28]
 gi|326554014|gb|ADZ88653.1| elongator protein 3 [Brucella melitensis M5-90]
          Length = 437

 Score =  345 bits (884), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 136/459 (29%), Positives = 212/459 (46%), Gaps = 42/459 (9%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R    S GC   + DS R+     S+GYE     D ADL+++NTC   + A ++    +G
Sbjct: 5   RVSFVSLGCPKALVDSERIITGLRSEGYEISRKHDGADLVIVNTCGFLDSARDESLEAIG 64

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                         +  V+V GC+  AE + I  R P V  + GPQ Y  +   +     
Sbjct: 65  LA---------LNENGKVIVTGCLG-AEPDVIRERHPNVLAITGPQAYESVMNAVHEVAP 114

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                       D F  L +   G        A+L I EGC   C+FC++P  RG  +SR
Sbjct: 115 ---------PAHDPFVDL-VPPQGVKLTPRHYAYLKISEGCSNRCSFCIIPALRGDLVSR 164

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE---------KCTFSDLLYSLSE 256
            +++V+ EA KL+  GV EI ++ Q+ +A  G  +  +         +  F DL   L E
Sbjct: 165 PINEVLREAEKLVQAGVKEILVISQDTSA-YGLDIKYQEAMWQDRTVRTKFLDLSRELGE 223

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           +   VR+ Y   +P       + A G    ++PYL +P Q  S  +LK+M R     +  
Sbjct: 224 MGVWVRMHYVYPYPHVDEVIPLMAEG---KILPYLDIPFQHASPAVLKNMRRPAHQEKTS 280

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
           + I   R   PD+A+ S FIVG+PGET++DF+  +D +D+    +A  FKY    G   +
Sbjct: 281 RRIQAWRETCPDLAVRSTFIVGYPGETEEDFQMLLDWLDEAKIERAGCFKYEAVKGAKAN 340

Query: 377 NM-LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS--- 432
           ++ LEQV E VK  R      K ++   +     VG+ + V+I++     GK  GR+   
Sbjct: 341 DLGLEQVPEEVKEARWHRFMAKQQQISTNLLKKKVGKRLPVIIDEANGTIGK--GRTRYD 398

Query: 433 -PWLQS-VVLNS-KNHNIGDIIKVRITDVKISTLYGELV 468
            P +   V ++S +   +GDI+ V+I       L+G  V
Sbjct: 399 APEIDGSVHISSRRPLRVGDIVTVKIEASDAYDLHGTAV 437


>gi|198423331|ref|XP_002121617.1| PREDICTED: similar to CDK5 regulatory subunit associated protein
           1-like 1 [Ciona intestinalis]
          Length = 516

 Score =  345 bits (884), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 126/473 (26%), Positives = 218/473 (46%), Gaps = 34/473 (7%)

Query: 6   KLIGVAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERV-NSMDDADL 64
           K++GV      I       Q  FVK++GC  N  DS  M     S GY  V  + D+ADL
Sbjct: 45  KVLGVELEDDTIQSNIPATQTIFVKTWGCTHNSSDSEYMAGQLASYGYNVVTENGDNADL 104

Query: 65  IVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIV 124
            +LN+C ++  A +   + + + ++L            VV+AGCV+Q   ++   +    
Sbjct: 105 WLLNSCTVKNPAEDHFRNMISKAQSLNKQ---------VVLAGCVSQGAPKQSYIQG--- 152

Query: 125 NVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFE-RLSIVDGGYNRKRGVTAFLTIQ 183
             ++G Q   R+ E++E    G  V       E+  +   + +D    R+      ++I 
Sbjct: 153 LSIIGVQQIDRVVEVVEETLKGNTVRLLKQKKENGRKIGGASLDLPKIRRNPFIEIISIN 212

Query: 184 EGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
            GC   CT+C   + RG   S  ++++V  A +    GV EI L  ++  A  G+ +   
Sbjct: 213 TGCLNSCTYCKTKHARGNLGSYPVAEIVQRAIQSFGEGVVEIWLTSEDTGA-YGRDI--- 268

Query: 244 KCTFSDLLYSLSEI--------KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPV 295
             +  +LL+ L ++         G+    Y   H  +M   L     +   +  +LH+PV
Sbjct: 269 GTSLPELLWELVKVIPVGCMLRVGMTNPPYILDHLEEMGKIL-----NHPNVYSFLHVPV 323

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
           QSGSD+ L  M R +TA ++  ++D +R+  P I+I++D I GFP ETD+DF  TM L +
Sbjct: 324 QSGSDQTLHEMRREYTASDFELVVDTLRASVPGISIATDIICGFPTETDEDFEDTMTLCE 383

Query: 356 KIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIE 415
           K  +   F  ++ PR GTP + M  Q+      +R   L +  R          +G+I +
Sbjct: 384 KYKFPSLFINQFFPRPGTPAARMP-QIHRQEIKKRTKRLSELFR--SYEPYGHQLGKIQK 440

Query: 416 VLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           VL+ +   ++   VG + + + V++       G + +V I +     L G+ +
Sbjct: 441 VLVTEIAHDQIHYVGHNKYYEQVLIPMDEDLTGKMFEVEIVETGKHFLKGKRI 493


>gi|78187264|ref|YP_375307.1| hypothetical protein Plut_1405 [Chlorobium luteolum DSM 273]
 gi|123730034|sp|Q3B317|RIMO_PELLD RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|78167166|gb|ABB24264.1| SSU ribosomal protein S12P methylthiotransferase [Chlorobium
           luteolum DSM 273]
          Length = 440

 Score =  345 bits (884), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 123/450 (27%), Positives = 210/450 (46%), Gaps = 33/450 (7%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
            F+ S GC  N  DS R++    + G       ++A++I++NTC   E A E+    +  
Sbjct: 10  VFLLSLGCSKNTVDSERLQAQAEASGITFTQQAEEAEVILINTCGFIEDAKEESIMEILA 69

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
             ++KN+    G    V V GC+ +    E+    P V+   G +    + + L      
Sbjct: 70  AVDMKNA----GTVRQVYVMGCLTELYRNELQEELPEVDRFFGTRELPAVLDALGA---- 121

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
                             + D         +++L I EGC + C+FC +P  RG  +S+ 
Sbjct: 122 -------------RYHQELYDHRSLLTPPHSSYLKIAEGCSRACSFCSIPKIRGRYLSQP 168

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
           + Q++ EAR L +NGV E+ L+ Q++    G  L G K   +DLL  LS+++    +R  
Sbjct: 169 MEQLLREARLLQENGVKELNLIAQDIT-VYGVDLYG-KQMLNDLLMRLSDME-FRWIRLL 225

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
            ++P      +I   G+   +  YL LP+Q  SD IL+SMNR  T  +  ++I+ IR+  
Sbjct: 226 YAYPVGFPLEVIDTIGNRSNICNYLDLPLQHCSDPILRSMNRGITKEQSLRLIEEIRNRN 285

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           PDI + +  I G+PGET  +F   ++    + + +   F Y     +P  ++++ V E  
Sbjct: 286 PDIRLRTTMIAGYPGETRKEFEEMLEFAGSVRFDRLGCFPYRHEEHSPAYSLIDTVPEEE 345

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIE--KHGKEKGKLVGRSPWLQSVVLN--- 441
           K ER+  L +   E     N+A VG ++ VL++  + G+E   L+GR+ +    V N   
Sbjct: 346 KQERVSELMELQEEIARKKNEAFVGSLMTVLVDRPEEGEEGLILIGRTEFDAPEVDNECL 405

Query: 442 ----SKNHNIGDIIKVRITDVKISTLYGEL 467
               S   + G  ++ RIT      L+G +
Sbjct: 406 LESGSPEPSPGTFVQARITGSTAYELHGTV 435


>gi|332141284|ref|YP_004427022.1| MiaB-like tRNA modifying enzyme YliG [Alteromonas macleodii str.
           'Deep ecotype']
 gi|238065285|sp|B4RYE6|RIMO_ALTMD RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|327551306|gb|AEA98024.1| MiaB-like tRNA modifying enzyme YliG [Alteromonas macleodii str.
           'Deep ecotype']
          Length = 485

 Score =  345 bits (884), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 130/461 (28%), Positives = 209/461 (45%), Gaps = 34/461 (7%)

Query: 19  DQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAE 78
            Q  V  R    S GC  N+ DS R+     ++GY+ V + +DADL+++NTC   + A E
Sbjct: 31  SQQGVGSRIGFVSLGCPKNLVDSERILTQLRTEGYDVVPTYNDADLVIVNTCGFIDAAVE 90

Query: 79  KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPE 138
           +    +G    LK +         V+V GC+   E +EI    P V  + GP  Y  + E
Sbjct: 91  ESLDTIGEA--LKENGK-------VIVTGCLGVKE-DEIRELHPNVLAITGPHAYETVVE 140

Query: 139 LLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
            +                 + F  L I D G        A+L I EGC+  CTFC++P  
Sbjct: 141 QVHEHL--------PKPQHNPFADL-IPDHGVKLTPRHYAYLKISEGCNHRCTFCIIPSM 191

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA------WRGKGLDGE--KCTFSDL 250
           RG  +SR +  V+DEA++L + GV E+ ++ Q+ +A       R    +G   K     L
Sbjct: 192 RGDLVSRPVGNVLDEAKRLKEAGVKELLVISQDTSAYGVDVKHRTGFWNGMPVKTHMQQL 251

Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
              L E+   VRL Y   +P       +    +   ++PYL +P Q  + RIL+ M R  
Sbjct: 252 CEQLGEMGIWVRLHYVYPYPHVDDLIPLM---NDGKILPYLDIPFQHANKRILRLMKRPG 308

Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370
           +A    + + + R   P + I S FIVGFPGET+++F   +D + +    +  +F YSP 
Sbjct: 309 SAERVLERVKKWREQCPSLVIRSTFIVGFPGETEEEFEELLDFLREAQLDRVGAFAYSPV 368

Query: 371 LGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKL 428
            G   +++ + V E++K ERL    +   E   +   A +G   +V+I+    E   G+ 
Sbjct: 369 EGARANDLPDPVPEDIKQERLARFMEVQGEISAARLKARIGNEYQVVIDSVDAEGAVGRT 428

Query: 429 VGRSPWLQS-VVLNSK-NHNIGDIIKVRITDVKISTLYGEL 467
              +P +   V LN   +   GD +   +       ++  L
Sbjct: 429 YADAPEVDGLVHLNGVYDVKPGDRVWAEVIHANEHDVWAVL 469


>gi|306841786|ref|ZP_07474472.1| MiaB-like tRNA modifying enzyme YliG [Brucella sp. BO2]
 gi|306845898|ref|ZP_07478466.1| MiaB-like tRNA modifying enzyme YliG [Brucella sp. BO1]
 gi|306273790|gb|EFM55628.1| MiaB-like tRNA modifying enzyme YliG [Brucella sp. BO1]
 gi|306288191|gb|EFM59578.1| MiaB-like tRNA modifying enzyme YliG [Brucella sp. BO2]
          Length = 437

 Score =  344 bits (883), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 137/459 (29%), Positives = 212/459 (46%), Gaps = 42/459 (9%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R    S GC   + DS R+     S+GYE     D ADL+++NTC   + A ++    +G
Sbjct: 5   RVSFVSLGCPKALVDSERIITGLRSEGYEISRKHDGADLVIVNTCGFLDSARDESLEAIG 64

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                         +  V+V GC+  AE + I  R P V  + GPQ Y  +   +     
Sbjct: 65  LA---------LNENGKVIVTGCLG-AEPDVIRERHPNVLAITGPQAYESVMNAVHEVAP 114

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                       D F  L +   G        A+L I EGC   C+FC++P  RG  +SR
Sbjct: 115 ---------PAHDPFVDL-VPPQGVKLTPRHYAYLKISEGCSNRCSFCIIPALRGDLVSR 164

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE---------KCTFSDLLYSLSE 256
            +++V+ EA KL+  GV EI ++ Q+ +A  G  +  +         +  F DL   L E
Sbjct: 165 PINEVLREAEKLVQAGVKEILVISQDTSA-YGLDIKYQEAMWQDRTVRTKFLDLSRELGE 223

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           +   VR+ Y   +P       + A G    ++PYL +P Q  S  +LK+M R     +  
Sbjct: 224 MGVWVRMHYVYPYPHVDEVIPLMAEG---KILPYLDIPFQHASPAVLKNMRRPAHQEKTS 280

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
           + I   R   PD+A+ S FIVG+PGETD+DF+  +D +D+    +A  FKY    G   +
Sbjct: 281 RRIQAWRETCPDLAVRSTFIVGYPGETDEDFQMLLDWLDEAKIERAGCFKYEAVKGAKAN 340

Query: 377 NM-LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS--- 432
           ++ LEQV E VK  R      K ++   +     VG+ + V+I++     GK  GR+   
Sbjct: 341 DLGLEQVPEEVKEARWHRFMAKQQQISTNLLKKKVGKRLPVIIDEANGTIGK--GRTRYD 398

Query: 433 -PWLQS-VVLNS-KNHNIGDIIKVRITDVKISTLYGELV 468
            P +   V ++S +   +GDI+ V+I       L+G  V
Sbjct: 399 APEIDGSVHISSRRPLRVGDIVTVKIEASDAYDLHGTAV 437


>gi|168184612|ref|ZP_02619276.1| RNA modification enzyme, MiaB family [Clostridium botulinum Bf]
 gi|237795842|ref|YP_002863394.1| MiaB family RNA modification protein [Clostridium botulinum Ba4
           str. 657]
 gi|182672297|gb|EDT84258.1| RNA modification enzyme, MiaB family [Clostridium botulinum Bf]
 gi|229260716|gb|ACQ51749.1| RNA modification enzyme, MiaB family [Clostridium botulinum Ba4
           str. 657]
          Length = 445

 Score =  344 bits (883), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 131/449 (29%), Positives = 214/449 (47%), Gaps = 21/449 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +  + S GC  N  DS  M      +  E V    +A +I++NTC   E A E+  + + 
Sbjct: 5   KVALVSLGCDKNRIDSELMLYKLNEE-AELVKDPKEAQVIIVNTCGFIETAKEESINTIL 63

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER-AR 144
           ++ + K    K     ++VV GC+ Q    E+    P +++++G   Y +L E ++   +
Sbjct: 64  QMASYK----KTHNCKVLVVTGCLTQRYKGELKELIPEMDIMLGVNDYDKLLESIKVFLK 119

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G++     YS     E   I+          TA++ I EGC+ FCT+C +P  RG   S
Sbjct: 120 SGEKSFYHKYSDTKINEGNRIL-----TTPTYTAYVRIAEGCNNFCTYCAIPRIRGKYRS 174

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R    ++ E   L   GV EI L+ Q+     G  + G+K    +LL  +S++KG+  +R
Sbjct: 175 RKKENILKEVENLAKQGVKEIILIAQDTTM-YGIDIYGKKV-LHELLRDISKVKGVKWIR 232

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
               +P ++++ LI+     D +  YL LP+Q  S+ +LK M R+ T      II ++R 
Sbjct: 233 LLYCYPEEITNELIEEIKSNDKVCKYLDLPIQQISNSVLKRMGRKTTKETIINIIKKLRK 292

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
               I + +  IVGFPGET+ +F    + V  I   +   FKYS   GT  + M EQ+DE
Sbjct: 293 EIEGITLRTSLIVGFPGETEGEFSELKEFVSDIKLDKLGVFKYSKEEGTSAALMEEQIDE 352

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVVL 440
            +K +R   +    +      N   +G+I EV++E    ++    GR    SP +   + 
Sbjct: 353 EIKEKREEEIMILQQSISKDINKEKIGKIYEVIVEGT--KEDMYYGRNYEMSPEIDGEIC 410

Query: 441 --NSKNHNIGDIIKVRITDVKISTLYGEL 467
               +N  IGDIIKV++T      L G +
Sbjct: 411 FEKDENVKIGDIIKVKVTHSLEYDLIGVV 439


>gi|319405657|emb|CBI79280.1| putative enzyme [Bartonella sp. AR 15-3]
          Length = 437

 Score =  344 bits (883), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 135/461 (29%), Positives = 210/461 (45%), Gaps = 38/461 (8%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           +V  R    S GC   + DS R+     S+GYE  N    ADL+++NTC   + A  +  
Sbjct: 1   MVAPRISFVSLGCPKALVDSERIITRLRSEGYEISNKHKGADLVIVNTCGFIDSARNESL 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           + +               +  V+V GC+  A+   IL+  P V  + GPQ Y  +   + 
Sbjct: 61  ANIDEA---------IKNNGKVIVTGCLG-AQPNIILQAYPNVFAITGPQDYESVIRAVH 110

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
                         V D F  L    G     R   A+L I EGC   C+FC++P  RG 
Sbjct: 111 TV---------IPPVHDPFVDLVPPQGIRLTPRHY-AYLKISEGCSNRCSFCIIPTLRGN 160

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE---------KCTFSDLLY 252
            ISR +S V+ EA KL+  GV E+ ++ Q+  A  G  L            K  F DL  
Sbjct: 161 LISRPISDVLHEAEKLVQAGVKELLVISQDTGA-YGIDLKYAESVWKNRIIKTKFLDLCR 219

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
            L E+   VR+ Y   +P       + A G    ++PYL +P Q  S  +L++M R    
Sbjct: 220 ELGEMGIWVRMHYLYPYPHIDEAIELMAAG---KILPYLDIPFQHASPTVLRNMKRPAHV 276

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
            +  + I+R R + PD+ + S FIVGFPGET++DF   ++ +++    +A  FKY    G
Sbjct: 277 EKISRRIERWRKICPDLTLRSTFIVGFPGETNEDFNMLLEWLEEAKIERAGCFKYEAVQG 336

Query: 373 TPGSNM-LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE--KGKLV 429
              +++ LE + E VK +R      K ++         +G+ ++VLI++   +  KG+  
Sbjct: 337 AVANDLGLENITEEVKEQRWHRFMTKQQKISAHLLKKKIGKRLQVLIDETQGKIAKGRSK 396

Query: 430 GRSPWLQSVVLNSK--NHNIGDIIKVRITDVKISTLYGELV 468
             SP +  VV  S      IG+ + V+I       LYG ++
Sbjct: 397 YDSPEIDGVVHISSRRPLRIGEFVTVKIEQSDSYDLYGNVI 437


>gi|84685287|ref|ZP_01013185.1| RNA modification enzyme, MiaB-family protein [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84666444|gb|EAQ12916.1| RNA modification enzyme, MiaB-family protein [Rhodobacterales
           bacterium HTCC2654]
          Length = 455

 Score =  344 bits (883), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 120/452 (26%), Positives = 200/452 (44%), Gaps = 34/452 (7%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +  + S GC   + DS R+     ++GY        AD +++NTC   + A  +    +G
Sbjct: 27  KIGMVSLGCPKALVDSERILTRLRAEGYAISPDYAGADAVIVNTCGFLDSAKAESLEAIG 86

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                         +  V+V GC+  A+ E I    P V  V GP  Y ++ + + +A  
Sbjct: 87  EA---------LNRNGRVLVTGCLG-ADPEYITGAHPSVLAVTGPHQYEQVLDAVHKA-- 134

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                       D F  L    G     R   ++L I EGC+  C FC++P  RG   SR
Sbjct: 135 -------VPPQPDPFVDLLPATGVTLTPRHY-SYLKISEGCNHACKFCIIPDMRGKLQSR 186

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-----GEKCTFSDLLYSLSEIKGL 260
               +V EA KL++ GV E+ ++ Q+ +A  G  L      G +   +DL   L  +   
Sbjct: 187 PAHAIVREAEKLVEAGVKELLVISQDTSA-YGLDLKYAEERGHRAHITDLARDLGSLGAW 245

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
           VRL Y   +P      LI    +  +++PYL +P Q     +LK M R   A      I 
Sbjct: 246 VRLHYVYPYPHV--RELIPLMAE-GLILPYLDIPFQHADTGVLKRMARPAAAARTLDEIA 302

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
             R + PDI++ S FIVG+PGET+D+F+  +D +D+    +   F+Y    G   + + +
Sbjct: 303 AWREICPDISLRSTFIVGYPGETEDEFQVLLDWMDEAQLDRVGCFQYENVDGARSNALPD 362

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG--KLVGRSPWLQSV 438
            V + VK ER     +K +    +   A VG+ IEV++++  ++    +    +P +   
Sbjct: 363 HVPDEVKEERWHRFMEKAQAISEAKLAAKVGKTIEVIVDEVEEDAATCRTKADAPEIDGC 422

Query: 439 VLNS---KNHNIGDIIKVRITDVKISTLYGEL 467
           +      ++   G I+ V + +     L+G L
Sbjct: 423 LFIDEGHEDLKPGQIVSVVVDEAGEYDLWGRL 454


>gi|320333384|ref|YP_004170095.1| 30S ribosomal protein S12 methylthiotransferase rimO [Deinococcus
           maricopensis DSM 21211]
 gi|319754673|gb|ADV66430.1| Ribosomal protein S12 methylthiotransferase rimO [Deinococcus
           maricopensis DSM 21211]
          Length = 477

 Score =  344 bits (883), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 127/482 (26%), Positives = 216/482 (44%), Gaps = 49/482 (10%)

Query: 8   IGVAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVL 67
           +      +   D     ++    S GC   + DS R+     ++GY+   S +DAD +++
Sbjct: 4   VRTPPTAAVPTDAL---KKVGFISLGCPKALVDSERILTQLRAEGYQVAGSYEDADTVIV 60

Query: 68  NTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVV 127
           NTC     A E+  + +G   +             V+V GC+ +   E I+ R P V  +
Sbjct: 61  NTCGFITPAVEESLNAIGEALDATGK---------VIVTGCLGER-PETIMERHPKVAAI 110

Query: 128 VGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCD 187
            G +    +           R V      +D      +   G        A++ I EGC+
Sbjct: 111 TGSEAVDDVM----------RHVRELLPQDDNPFTSLLPSTGVKLTPRHYAYVKIAEGCN 160

Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLD 241
             C+FC++P  RG+++SR    V+ EA +LI  G  E+ ++ Q+ +A+      R     
Sbjct: 161 HTCSFCIIPKLRGLQVSRDAGAVLYEAFRLIAGGTKELMIISQDTSAYGVDVRYRESEFQ 220

Query: 242 GE--KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
           GE  +    DL   L E+   VR+ Y   +P   +   + A G    ++PYL +P+Q  +
Sbjct: 221 GEQVRAHLVDLAQKLGEMGAWVRMHYIYPYPHIENVVRLMAEG---KILPYLDVPLQHAA 277

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
             +LK M R   A +  + I R R + P++ I S FIVGFPGET+ DF+  +D ++    
Sbjct: 278 PSVLKRMRRPG-AGKQLETIRRWREICPELTIRSTFIVGFPGETESDFQLLLDFLEDARL 336

Query: 360 AQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419
            +  +F YS       ++  ++V E VK ERL    +  +          VG++++V+I+
Sbjct: 337 DRVGAFTYSEVEEADATHFEDRVPEAVKQERLARFMEVAQRISAEKLQEKVGRVMDVIID 396

Query: 420 KHGKEKG-----KLVGRS----PWLQSVVL-----NSKNHNIGDIIKVRITDVKISTLYG 465
           +   ++G     KL+GR+    P +   V       +    IGDI++  I D     LYG
Sbjct: 397 EFNDDEGDAPGTKLIGRTKGDAPGIDGQVYLYAGDLAGQVKIGDIVEAIIEDADEYDLYG 456

Query: 466 EL 467
           E+
Sbjct: 457 EV 458


>gi|301165856|emb|CBW25429.1| conserved hypothetical protein [Bacteriovorax marinus SJ]
          Length = 433

 Score =  344 bits (882), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 130/444 (29%), Positives = 221/444 (49%), Gaps = 21/444 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++  + + GC++N  ++  +   F  +GYE V   + AD+I +NTC + + A        
Sbjct: 10  KKVALHTLGCRLNFSETGSVAKGFTDRGYEIVEFGEKADVIFVNTCTVTDAADSTC---- 65

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
              RNL     K   +  +VVAGC AQ E E I      V++V+G    Y++ E L    
Sbjct: 66  ---RNLIRKAHKSSPEGKIVVAGCYAQMEPETIANMQ-GVDLVLGTSEKYKVFEYLNEED 121

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
                +  D + +      +  D          AFL IQ+GC+  C+FC++P+ RG   +
Sbjct: 122 T--TAIHVDKTTDFYGAATTTADSH------TRAFLKIQDGCNYVCSFCIIPFARGRSKA 173

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
            S++  ++ A+KLI++G  EI L G N+  +  +   GEK   +D++ +L +++GL RLR
Sbjct: 174 ISINGALENAKKLIEDGFKEIVLTGVNIGEY--ETSSGEK--LTDMVKALLDLEGLERLR 229

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
            ++  P  ++D L++          + H+P+QSG D ILK+M R++T  +Y+++I++I +
Sbjct: 230 LSSVEPNTITDELLEVFKSSPKFKDHFHIPLQSGDDEILKNMRRKYTVADYKKVINKIIT 289

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             P+  I +D I GFPGET + F  T +LV ++       F YS R GT    M   +  
Sbjct: 290 AFPNAGIGADIICGFPGETKEQFENTYNLVKELPITHFHVFPYSKRKGTTAGRMDNHIHS 349

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
             K ER+  L      +   F++  VG   EVL E+  K+ G   G +     V + ++ 
Sbjct: 350 ATKKERVKSLLHLGEAKLALFSEDQVGSQSEVLFERRTKD-GLYTGYTTNYVKVYVETEL 408

Query: 445 HNIGDIIKVRITDVKISTLYGELV 468
                I  V + + K   ++ EL+
Sbjct: 409 ELKNQIRSVYLKEYKDGKVFAELI 432


>gi|254292968|ref|YP_003058991.1| ribosomal protein S12 methylthiotransferase [Hirschia baltica ATCC
           49814]
 gi|254041499|gb|ACT58294.1| MiaB-like tRNA modifying enzyme YliG [Hirschia baltica ATCC 49814]
          Length = 450

 Score =  344 bits (882), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 127/467 (27%), Positives = 210/467 (44%), Gaps = 38/467 (8%)

Query: 14  VSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIR 73
             Q   + + P +  + S GC   + DS R+     ++GYE       A+L+++NTC   
Sbjct: 3   TEQAPIRGVAP-KIGIVSLGCPKALVDSERIITRLRAEGYEISGEYKGANLVLVNTCAFL 61

Query: 74  EKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTY 133
           + A ++    +G              +  V+V GC+  AE E I  +   V  V GP  Y
Sbjct: 62  DSARDESLEAIGEALE---------ENGRVIVTGCLG-AEPEVIEAQYSNVLAVTGPAQY 111

Query: 134 YRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC 193
            ++ + + +                   +  + + G        A+L I EGC   C+FC
Sbjct: 112 EQVMDAVHKH----------CPQPPNAFQSLVPESGIRLTPRHYAYLKISEGCSNRCSFC 161

Query: 194 VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT------- 246
           ++P  RG   SR + QV+ EA +L   GV E+ ++ Q+ +A  G  +  E  T       
Sbjct: 162 IIPSLRGDLASRPIDQVLREAEQLQKAGVNELLVISQDTSA-YGMDIKYEPRTWKDKEYE 220

Query: 247 --FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304
             F DL   L ++    RL Y   +P       + A G    ++PYL +P Q  S  +L+
Sbjct: 221 TRFLDLCQGLGDMGMWTRLHYVYPYPHVDKVIPLMAEG---KILPYLDIPFQHASPNVLR 277

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
           +M R     +  + I + R   PDIAI S FIVGFPGETD+DF   MD + +    +A  
Sbjct: 278 NMKRPAKQDKVLERIKQWRIDVPDIAIRSTFIVGFPGETDEDFEMLMDFMREAKIDRAGC 337

Query: 365 FKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE 424
           FKY    G    ++   V E VK ER     +  ++     ++A +G++++++I+    E
Sbjct: 338 FKYEDVKGAVSHDLPNHVPEEVKEERWHRFMQLQQDISHERSEAQIGRVLDIIIDDSNGE 397

Query: 425 K--GKLVGRSPWLQS-VVLNS-KNHNIGDIIKVRITDVKISTLYGEL 467
              G+    +P +   V L +  +  +GDI+K  ITD     L+ ++
Sbjct: 398 AAVGRTKADAPEIDGLVHLENYPDLEVGDIVKAEITDANCYDLWAKV 444


>gi|221194798|ref|ZP_03567855.1| conserved hypothetical protein [Atopobium rimae ATCC 49626]
 gi|221185702|gb|EEE18092.1| conserved hypothetical protein [Atopobium rimae ATCC 49626]
          Length = 460

 Score =  344 bits (882), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 128/468 (27%), Positives = 214/468 (45%), Gaps = 25/468 (5%)

Query: 13  MVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHI 72
           MVS      I  +     + GC  N  D+ RM  + F+QG+  V++ ++AD++++NTC  
Sbjct: 1   MVSPSNTPTIDKKNILFVTLGCAKNEVDTDRMRALLFAQGFSEVDTPNEADIVLINTCSF 60

Query: 73  REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT 132
              A E+      +I             L +V+ GCV    G ++    P V   V    
Sbjct: 61  LASATEESIETTLQIA---EGASHGVRSLPIVMCGCVPSRYGSKLPEELPEVAAFVRADE 117

Query: 133 YYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTF 192
              + E          VV     +E   + +    G      G +A++ I +GCD+FC F
Sbjct: 118 EDGIVE----------VVSEVLGIERTPQSVIAAHGMLRTVEGASAYVKISDGCDRFCAF 167

Query: 193 CVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD---GEKCTFSD 249
           C +PY RG   SR   +++ E   L++ GV EI L+GQ+   W     +   GE  T + 
Sbjct: 168 CAIPYIRGHYQSRPADEILSEVSSLMEGGVREIILIGQDTGIWGNDIAETNTGEVPTLAW 227

Query: 250 LLYSLSEI--KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307
           L+  ++++       +R     P  M+D LI    D    +PY+ +P+Q  S+R+L  M 
Sbjct: 228 LMRQVAQVVRPYNGWVRVLYLQPEGMTDELISTIRDTPECLPYIDIPIQHCSERVLARMG 287

Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           R  +A E R + DR+R   P + + +  + GFPGET+++     D + +  +     F Y
Sbjct: 288 RSGSAPELRSLFDRLRREIPGMVLRTTGMCGFPGETEEESDELYDFIQEQEFDYTSVFTY 347

Query: 368 SPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKG 426
           SP  GT G++M  QV + +K ER   L   + E   +     VG+  EV+I+     ++G
Sbjct: 348 SPEEGTAGASMPNQVPDEIKMERTQRLIDLVEELGFAGTARHVGERCEVIIDGIEDTDEG 407

Query: 427 -KLVGR----SPWLQS-VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            +L+G     +P     V + +    +GDI+   + D     + GE+V
Sbjct: 408 FELIGHAWFQAPDCDGAVHIANGEARVGDIVLCDLVDSFCYEIIGEIV 455


>gi|311747718|ref|ZP_07721503.1| 2-methylthioadenine synthetase [Algoriphagus sp. PR1]
 gi|126575706|gb|EAZ80016.1| 2-methylthioadenine synthetase [Algoriphagus sp. PR1]
          Length = 439

 Score =  344 bits (882), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 116/437 (26%), Positives = 215/437 (49%), Gaps = 16/437 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++    + GC++N  ++  +   F  +GY +V+  ++ D+ ++NTC + E A +K    +
Sbjct: 2   KKVAFYTLGCKLNFSETSTISRQFEDKGYLKVDFQENPDIFIINTCSVTENADKKCKKIV 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
              +       K   +  V + GC AQ + +EI    P V+ V+G    +RL ELL+   
Sbjct: 62  KEAK-------KISPNSYVTIIGCYAQLKPKEI-SEIPDVDAVLGAAEKFRLIELLDDFA 113

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
             +        +++     +  +  Y+       FL +Q+GC+  C FC +P  RG   S
Sbjct: 114 KAQETKVLASEIQEA----TTFNNAYSINDRTRTFLKVQDGCNYGCAFCTIPLARGKSRS 169

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC-TFSDLLYSLSEIKGLVRL 263
            ++  V++ AR++    V EI L G N+  +    +DG++   F+DL+++L +++G+ R 
Sbjct: 170 NTIESVLESAREIAATDVKEIVLTGVNIGDF--GIVDGKRNERFADLVFALDDVEGINRF 227

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R ++  P  +++ +I         +P+ H+P+QSGS+ IL+ M RR+    Y   + +I+
Sbjct: 228 RISSIEPNLLTNEIISFAAQSKRFVPHFHVPLQSGSNTILRKMGRRYLRELYVDRVSKIK 287

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           S+ P   I  D IVGFPGETD+ F  T + ++++  +    F YS R  T  + M   V 
Sbjct: 288 SLMPHACIGVDVIVGFPGETDELFLETYNFLNELDISYLHVFTYSERANTRATEMEGVVP 347

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
           + V+ ER   L+    +++  F +  +G+   VL E+   E GK+ G +     V     
Sbjct: 348 KKVRNERSKMLRILSEKKRRKFYEENLGKTFTVLFEE-DIENGKMHGFTENYIRVAAKYD 406

Query: 444 NHNIGDIIKVRITDVKI 460
              I ++  V +  +  
Sbjct: 407 PLLINELKTVTLDQINE 423


>gi|283856338|ref|YP_162542.2| 30S ribosomal protein S12 methylthiotransferase [Zymomonas mobilis
           subsp. mobilis ZM4]
 gi|238055318|sp|Q5NPC9|RIMO_ZYMMO RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|6685125|gb|AAF23796.1|AF213822_11 hypothetical protein [Zymomonas mobilis subsp. mobilis ZM4]
 gi|283775335|gb|AAV89431.2| MiaB-like tRNA modifying enzyme YliG [Zymomonas mobilis subsp.
           mobilis ZM4]
          Length = 443

 Score =  344 bits (882), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 122/462 (26%), Positives = 206/462 (44%), Gaps = 36/462 (7%)

Query: 17  IVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA 76
           ++ +     +  + S GC   + DS R+     S+GY   +  D+AD++++NTC   + A
Sbjct: 1   MIKKLPTSPKIGMVSLGCPKALVDSERILTKLRSEGYNLSSQYDEADVVLVNTCGFIDSA 60

Query: 77  AEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL 136
            E+    +G              +  V+V GC+   E   I  R P +  + G Q Y  +
Sbjct: 61  KEESLDAIGEA---------MAENGRVIVTGCLGN-EANRIRERFPDILAITGAQQYEEV 110

Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
              +  A   +     D           + + G        ++L I EGC+  C+FC++P
Sbjct: 111 VSAVHDAAPIEASPYVDL----------VPEQGLKLTPRHYSYLKISEGCNHRCSFCIIP 160

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW--------RGKGLDGEKCTFS 248
             RG  +SR    ++ EA KL+  G  E+ ++GQ+ +A+                K   +
Sbjct: 161 SLRGDLVSRRADAILREAEKLVAAGTKELLVIGQDSSAYGVDLRHQEYRWKDRMVKADLT 220

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
           DL   L E+   VRL Y   +P   +   + A G   +++PYL +P Q  S  +LK M R
Sbjct: 221 DLARGLGELGAWVRLHYVYPYPHVDNLIPLMAEG---LILPYLDIPFQHASPSVLKRMKR 277

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
                +    + + R + PDIA+ S F+VGFPGET+ DF+  +D +D+    +  +F++ 
Sbjct: 278 PANEVKILDRLTKWREIVPDIALRSSFVVGFPGETEQDFQYLLDWLDEAQLDRVGAFRFE 337

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI---EKHGKEK 425
              G   +     V E VK ER   L +K  +   +   A +G+ I  +I   +  G   
Sbjct: 338 AVEGAAANAFDGAVPEEVKNERYQRLMEKAAQISEAKLQAKIGRDIATIIDRTDGEGGAS 397

Query: 426 GKLVGRSPWLQSVVL--NSKNHNIGDIIKVRITDVKISTLYG 465
           G+    +P +   V   ++ N  IGDI+ VR+ D     L+G
Sbjct: 398 GRSYADAPEIDGEVHLRDADNLKIGDIVTVRVEDADEHDLFG 439


>gi|237744247|ref|ZP_04574728.1| Fe-S oxidoreductase [Fusobacterium sp. 7_1]
 gi|229431476|gb|EEO41688.1| Fe-S oxidoreductase [Fusobacterium sp. 7_1]
          Length = 435

 Score =  344 bits (882), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 120/445 (26%), Positives = 225/445 (50%), Gaps = 20/445 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++    + GC++N Y++  +++    +GYE V   D +D+ ++N+C +   A  K  + L
Sbjct: 5   KKVAFHTLGCKVNQYETESIKNQLIKRGYEEVPFEDKSDIYIINSCTVTSIADRKTRNML 64

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R +       K   +  V+V GC AQ    EIL     V+ V+  +    +   +    
Sbjct: 65  RRAK-------KINPNAKVIVTGCYAQTNSREIL-EIEDVDFVIDNKNKSNIVNFVGAIE 116

Query: 145 --FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
               +R  + +   E +++           +    A++ IQ+GC+ FC++C +P+ RG  
Sbjct: 117 DISFEREKNGNIFQEKEYQEYEFATL----REMTRAYVKIQDGCNHFCSYCKIPFARGKS 172

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR    ++ E  KL+++G  E+ L+G +++A  G+  + EK +F  LL  + +I+ L R
Sbjct: 173 RSRKKENILKEIEKLVEDGFKEVILIGIDLSA-YGEDFE-EKDSFESLLEDILKIRDLKR 230

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R  + +P  ++D  I+   +   LMP+LH+ +QS  D +LK+M R + +   R+ + ++
Sbjct: 231 VRIGSVYPDKITDRFIELFKN-KNLMPHLHISLQSCDDTVLKNMRRNYGSLLIRESLLKL 289

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           +S   ++  ++D IVGFP E +  F+ T D++ +I ++    F+YS R GT  SNM  +V
Sbjct: 290 KSKIKNMEFTADVIVGFPKEDETMFQNTYDVIREIKFSGLHIFQYSDREGTIASNMDGKV 349

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
           D   K +R   L    +E  +      + + +EVL+E+  ++ G+  G S     V   S
Sbjct: 350 DSKTKKQRADRLDSLKQEMLIESRKKYLEKNLEVLVEE--EKDGEYFGYSQNYLRVKFKS 407

Query: 443 KN-HNIGDIIKVRITDVKISTLYGE 466
                I  +I ++I  V+ + L GE
Sbjct: 408 DEKELINKLINIKIKCVENNVLIGE 432


>gi|256425530|ref|YP_003126183.1| MiaB-like tRNA modifying enzyme [Chitinophaga pinensis DSM 2588]
 gi|256040438|gb|ACU63982.1| MiaB-like tRNA modifying enzyme [Chitinophaga pinensis DSM 2588]
          Length = 425

 Score =  343 bits (881), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 125/433 (28%), Positives = 216/433 (49%), Gaps = 17/433 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
             ++    + GC++N  ++  +  +    G+ + +  + AD+ V+NTC + E A ++   
Sbjct: 3   TGKKVAFHTLGCKLNFSETSSLSRLLEQDGFVKTDFEEQADVYVINTCSVTENADKECRH 62

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            + RI+       +   + ++V+ GC AQ + +EI      V++V+G    + + + L+ 
Sbjct: 63  LVRRIQ-------RRAPESMIVITGCYAQLKPKEIA-EIEGVDLVLGAAEKFNIVDHLKT 114

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
              G    D+        E ++     Y+       FL +Q+GCD  C+FC +P  RG  
Sbjct: 115 LTKG----DSAKICSCDIEDVNTFHASYSVNDRTRTFLKVQDGCDYTCSFCTIPMARGKS 170

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC---TFSDLLYSLSEIKG 259
            S S+++VV+ A  L  +GV EI L G N+  + GKGL+G K    TF +L+  L +++G
Sbjct: 171 RSDSVARVVEHAHSLAASGVKEIVLTGINLGDF-GKGLEGGKKREETFFELIQELDKVEG 229

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           + R R ++  P  +S+ +I+   +    MP+ H+P+QSGS+ IL  M RR+    Y   +
Sbjct: 230 IERYRISSIEPNLLSNEIIEFVANSKRFMPHFHIPLQSGSNDILGLMRRRYRRELYADKV 289

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
             I+   P  AI  D IVGFP E+D  F+ T D +  +  +    F YS R  T   ++ 
Sbjct: 290 ALIKQFMPHCAIGVDVIVGFPSESDAHFQETYDFLHGLDISYLHVFTYSERANTSALDIT 349

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV 439
             V  N++ ER   L+    ++Q  FN+  VG+  +VL EKHGK+ G + G +     V 
Sbjct: 350 PVVPVNIRNERNKMLRNLSHKKQQYFNEQHVGETRKVLFEKHGKD-GMMEGYTDNYIKVT 408

Query: 440 LNSKNHNIGDIIK 452
              +      +I+
Sbjct: 409 TPYRLEWTNQLIE 421


>gi|160880431|ref|YP_001559399.1| MiaB-like tRNA modifying enzyme [Clostridium phytofermentans ISDg]
 gi|160429097|gb|ABX42660.1| MiaB-like tRNA modifying enzyme [Clostridium phytofermentans ISDg]
          Length = 466

 Score =  343 bits (881), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 128/451 (28%), Positives = 228/451 (50%), Gaps = 30/451 (6%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           +  ++    + GC++N Y++  M+ +F   G   V+  + +D+ V+NTC +   A  K  
Sbjct: 18  VTGKKVAFLTLGCKVNSYETEAMQQLFLDAGATIVDFEELSDIYVVNTCTVTNIADRKSR 77

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             L + +       K   + +V+  GC  QA  E +L     V++V+G      +  L++
Sbjct: 78  QMLHKAK-------KNNPNSVVIAVGCYVQAAKEALL-EDDTVDLVIGNNKKNEIVSLVD 129

Query: 142 RARFGKR---VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
                +    V+D D   E  +E L+I            A++ IQ+GC++FC++C++PY 
Sbjct: 130 EYYDNQSNYAVIDIDNDFE--YEELAIAAV----TEKTRAYIKIQDGCNQFCSYCIIPYA 183

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL----------DGEKCTFS 248
           RG   SRS  ++  E  +L++NG  EI L G +++++  + L          +       
Sbjct: 184 RGRIRSRSEEEIKKEVMRLVENGYQEIVLTGIHLSSYGLETLSVKEQAALLPENGISPLM 243

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
            L+ SLSEI+GL R+R ++  PR +++  +K       L P+ HL +QSG    L  MNR
Sbjct: 244 TLILSLSEIEGLNRIRLSSLEPRIITEEFVKTLARS-KLCPHFHLSLQSGCKETLVRMNR 302

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
           ++T  +Y +  + IR+   + AI++D IVGFPGET+++F  T   ++K+ ++Q   FKYS
Sbjct: 303 KYTPDDYYKRCEIIRTYYENPAITTDVIVGFPGETEEEFEDTKAFLEKVQFSQMHIFKYS 362

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG--KEKG 426
            R GT    M  QV E +K++R   L    ++ +  + D+ +G    VL E+    ++  
Sbjct: 363 KRKGTKAEAMPNQVPEQIKSKRSENLFDSEKKMRAKYLDSFIGINEIVLTEEETMIEDTL 422

Query: 427 KLVGRSPWLQSVVLNSKNHNIGDIIKVRITD 457
            ++G +     V +   N    +++ VRIT 
Sbjct: 423 YMIGHTTRYVKVAIPVSNLKSNELVNVRITG 453


>gi|21224098|ref|NP_629877.1| hypothetical protein SCO5752 [Streptomyces coelicolor A3(2)]
 gi|289768712|ref|ZP_06528090.1| MiaB-like tRNA modifying enzyme YliG [Streptomyces lividans TK24]
 gi|81345581|sp|O86812|RIMO_STRCO RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|3294240|emb|CAA19853.1| conserved hypothetical protein SC7C7.07 [Streptomyces coelicolor
           A3(2)]
 gi|289698911|gb|EFD66340.1| MiaB-like tRNA modifying enzyme YliG [Streptomyces lividans TK24]
          Length = 493

 Score =  343 bits (881), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 129/484 (26%), Positives = 210/484 (43%), Gaps = 45/484 (9%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +   + + GC  N  DS  +     + G++ V+  ++AD+ V+NTC   E A +     L
Sbjct: 5   RTVALVTLGCARNEVDSEELAGRLEADGWKLVDDAEEADVAVVNTCGFVEAAKKDSVDAL 64

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL---- 140
               +LK      G    VV  GC+A+  G+E+    P  + V+G   Y  + + L    
Sbjct: 65  LEANDLKG----HGRTQAVVAVGCMAERYGKELADALPEADGVLGFDDYADISDRLQTIL 120

Query: 141 ----------------------ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRG--- 175
                                 ER   G  V    +   D  E ++   G     R    
Sbjct: 121 NGGIHAAHTPRDRRKLLPISPAERQEAGAAVALPGHGPTDLPEGVAPASGPRAPLRRRLD 180

Query: 176 --VTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVN 233
               A + +  GCD+ C+FC +P  RG  ISR  S V++E R L + GV EI L+ +N N
Sbjct: 181 GSPVASVKLASGCDRRCSFCAIPSFRGSFISRRPSDVLNETRWLAEQGVKEIMLVSEN-N 239

Query: 234 AWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHL 293
              GK L G+      LL +L+E+ G+ R+R +   P +M   LI      + + PY  L
Sbjct: 240 TSYGKDL-GDIRLLESLLPNLAEVDGIERVRVSYLQPAEMRPGLIDVLTSTEKVAPYFDL 298

Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
             Q  +  +L++M R      + +++D IRS  P+  + S+FIVGFPGE++ D       
Sbjct: 299 SFQHSAPNVLRAMRRFGDTDRFLELLDTIRSKAPEAGVRSNFIVGFPGESEADLAELERF 358

Query: 354 VDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQI 413
           ++         F YS   GT  +   +++DE+V AERL  + +   E      D  VG  
Sbjct: 359 LNHARLDAIGVFGYSDEEGTEAATYGDKLDEDVVAERLARVSRLAEELVSQRADERVGAT 418

Query: 414 IEVLIEKHGK--EKGKLVGR----SPWLQSVVL--NSKNHNIGDIIKVRITDVKISTLYG 465
           + VL+E      E   + GR    +P     VL  +    ++G ++  ++   +   L  
Sbjct: 419 VRVLVESVDPAGEGDGVRGRAEHQAPETDGQVLLTSGAGLSVGRMVDAKVVGTEGVDLVA 478

Query: 466 ELVV 469
           E ++
Sbjct: 479 EPLL 482


>gi|225028525|ref|ZP_03717717.1| hypothetical protein EUBHAL_02804 [Eubacterium hallii DSM 3353]
 gi|224954168|gb|EEG35377.1| hypothetical protein EUBHAL_02804 [Eubacterium hallii DSM 3353]
          Length = 450

 Score =  343 bits (881), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 129/457 (28%), Positives = 232/457 (50%), Gaps = 22/457 (4%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           +  +R    + GC++N Y++  ME++    GYE V+  + AD+ ++NTC +   A  K  
Sbjct: 1   MSKRRAAFLTLGCKVNQYETDAMEEILEKAGYEIVSFKETADVYIINTCSVTNMADRKSR 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             + R +       K   D ++V AGC  QA  EE+ +++   +++VG      + ++LE
Sbjct: 61  QMIHRAK-------KNNPDAIIVAAGCYVQAAEEELAKKN-EADILVGNNKKKDIAQILE 112

Query: 142 R---ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKR-GVTAFLTIQEGCDKFCTFCVVPY 197
               A+  ++ V     V D        D   ++      A++ IQ+GC++FC++C++PY
Sbjct: 113 EYFAAKEPEQEVPVVSEVIDINHTKEYEDLTIHKVNEHTRAYIKIQDGCNQFCSYCIIPY 172

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257
           TRG   S++  +V++E + L   G  EI L G +++++   G D    T  D++  + ++
Sbjct: 173 TRGRIRSKNPEEVIEEVKNLAAQGYKEIVLTGIHLSSY---GKDLGTVTLLDVIKRIQQV 229

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
           + + R+R  +  PR +++  +K     D + P+ HL +QSG D  LK MNR++T  EY +
Sbjct: 230 EDVERIRLGSLEPRIITEEFVKELVKCDKVCPHFHLSLQSGCDETLKRMNRKYTTEEYEE 289

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
            ++ +R      A+++D I GF GET+++F  T   ++KI   +   FKYS R GT    
Sbjct: 290 ALNILRKYYEHPALTTDVIAGFVGETEEEFEKTRAYLEKINLYEMHIFKYSVREGTRAQK 349

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG--KLVGRSPWL 435
           M   V E VK ER   L    +  + +F +  VG+  +VL+E+  ++ G     G +   
Sbjct: 350 MSGHVPEQVKTERSEVLLSMAKRHKTAFEEWYVGRKEKVLLEEIVEKNGKKYFQGYTAHY 409

Query: 436 QSVVL----NSKNHNIGDIIKVRITD-VKISTLYGEL 467
             V +    N       ++I V I   +  + LYG++
Sbjct: 410 VKVAVELTENDTKLEQNEVIVVDIQGFIDENLLYGKV 446


>gi|110638137|ref|YP_678346.1| 2-methylthioadenine synthetase [Cytophaga hutchinsonii ATCC 33406]
 gi|110280818|gb|ABG59004.1| possible 2-methylthioadenine synthetase [Cytophaga hutchinsonii
           ATCC 33406]
          Length = 438

 Score =  343 bits (881), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 117/440 (26%), Positives = 209/440 (47%), Gaps = 14/440 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++    + GC++N  ++  +  MF   GYE+V   + AD+ ++NTC + + A +K    +
Sbjct: 2   KKVAFYTLGCKLNFSETSTIGRMFTENGYEKVEFHEKADVYIINTCSVTDHADKKCKKVV 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
                     ++      V + GC AQ + EEI  + P V+ V+G    ++L ELL    
Sbjct: 62  KEA-------LRYSPGAFVGIIGCYAQLKPEEIA-QIPGVDAVLGASEKFKLFELLGNFD 113

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
              +       +    +        Y+       FL +Q+GCD  C+FC +P  RG   S
Sbjct: 114 KQDKATIYTSDIAHATDYY----CSYSVNDRTRTFLKVQDGCDYSCSFCTIPLARGSSRS 169

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
            +++ +V  A+++    V EI L G N+    G        +F DL+  L +++G+ R R
Sbjct: 170 DTIANIVKTAKEIAAKDVKEIVLTGVNIG-DYGIISGTRTTSFLDLIKELDKVEGIERFR 228

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
            ++  P  ++D +I         +P+ H+P+QSG+D+ILK M RR+    Y + ++ I+ 
Sbjct: 229 ISSIEPNLLTDEIISFVSTSRRFVPHFHIPLQSGNDKILKLMRRRYKRELYAERVEAIKK 288

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           V P   I  D IVGFPGETD+DF  T + ++++  +    F YS R  T  + M  +   
Sbjct: 289 VMPHACIGVDVIVGFPGETDEDFNVTYNFLNELDISYLHVFSYSERANTLAATMKGKRPN 348

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
             ++ER   L+    +++  F +  + +  +VL E   +E G + G +     VV     
Sbjct: 349 RDRSERSTMLRTLSEKKRRFFYEQHITETADVLFEAE-EENGSMFGFTNNYVKVVTAYDP 407

Query: 445 HNIGDIIKVRITDVKISTLY 464
             + ++ KV++  +    L 
Sbjct: 408 LWVNELKKVKLKTINTEGLV 427


>gi|300024819|ref|YP_003757430.1| MiaB-like tRNA modifying enzyme [Hyphomicrobium denitrificans ATCC
           51888]
 gi|299526640|gb|ADJ25109.1| MiaB-like tRNA modifying enzyme [Hyphomicrobium denitrificans ATCC
           51888]
          Length = 419

 Score =  343 bits (880), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 135/441 (30%), Positives = 215/441 (48%), Gaps = 31/441 (7%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V + GC++N Y+S  M       G +        D I++NTC +  +A  +    + R+R
Sbjct: 6   VITLGCRLNAYESEVMRRHAQDAGLD--------DAIIVNTCAVTGEAVRQASQTIRRLR 57

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL--LERARFG 146
             K        +  ++V GC AQ E +      P V+ VVG            L  A   
Sbjct: 58  RDK-------PNARIIVTGCAAQTEAQRFAD-MPEVDHVVGNGEKMLAETFAGLSIASSA 109

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           +  V+   +V ++   +  ++G  +R R   A++ IQ GCD  CTFC++P+ RG   S  
Sbjct: 110 RVQVNDIMAVREQASHM--IEGFGSRTR---AYVAIQNGCDHRCTFCIIPFGRGPSRSVP 164

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
             +VV + R+L+ NG  EI L G ++ +  G+ L G       +   L  +  L RLR +
Sbjct: 165 AGEVVTQVRRLVANGYAEIVLTGVDITS-YGRDLPGVATLGKLVRQVLKHVPDLARLRLS 223

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
           +    +  + L+ A G+ + LMP+LHL +Q+G D  LK M RRH+  +     +R R++R
Sbjct: 224 SIDQVEADEDLMIALGEEERLMPHLHLSMQAGDDMTLKRMKRRHSRADAIMFCERARTLR 283

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           PD+   +D I GFP ETD  F  ++ +VD+ G      F +SPR GTP + M  QV  N+
Sbjct: 284 PDVVFGADLIAGFPTETDAMFENSLKIVDECGLTYLHVFPFSPRRGTPAARMP-QVPGNI 342

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHN 446
             ER   L+ + +    S+  A  G+ ++VL+E  G      +GR+P    V + S    
Sbjct: 343 VKERAAELRARGQAVLTSYLAAQQGRTVDVLLESDG------MGRTPQFAEVDMRSSGAK 396

Query: 447 IGDIIKVRITDVKISTLYGEL 467
            G+I+   IT    + L GE+
Sbjct: 397 AGEIVHAVITGASSTRLIGEV 417


>gi|150021041|ref|YP_001306395.1| MiaB-like tRNA modifying enzyme YliG [Thermosipho melanesiensis
           BI429]
 gi|238066621|sp|A6LM59|RIMO_THEM4 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|149793562|gb|ABR31010.1| MiaB-like tRNA modifying enzyme YliG [Thermosipho melanesiensis
           BI429]
          Length = 427

 Score =  343 bits (880), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 119/446 (26%), Positives = 207/446 (46%), Gaps = 27/446 (6%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           F+V+  GC  N  D   ++      G   V+++ DAD ++++TC     A ++    +  
Sbjct: 3   FYVEVLGCPKNEADCALLKSHLRKMGNNIVDNLSDADAVIIDTCGFILDAKKESIEEILS 62

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
               K      G +L V V GC+ Q  G+E+ +  P V+   G      +   + +    
Sbjct: 63  YVEYKK-----GKNLKVFVTGCLVQRFGKELKKEIPEVDGWFGVLPPKEIATHIGKRNVI 117

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
             V +  Y+ E + +             G  A++ I +GCD+ C+FC +P  +G   SR 
Sbjct: 118 PEVPEPVYNFEGRVD------------NGQYAYVKISDGCDRACSFCTIPLFKGSFKSRK 165

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
           +  ++ E   LI+  + EI L+ Q+     G  +   K    +LL  ++++ G   +R  
Sbjct: 166 IDDILKEIEFLIERKIKEIILVAQDTTG-YGIDIY-RKQMLPELLKRINDLSGDFWVRVM 223

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
             HP  ++D +I+A    D ++ Y  +PVQ+GSD+ILK MNR     +   + ++IR+  
Sbjct: 224 YMHPDHITDDIIEAF-SYDKVLKYFDIPVQNGSDKILKLMNRSRKTRQLYSLFEKIRNFY 282

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
            D  + +  IVGFPGET  DF  T+  + ++ + +  +F YS        ++  +V   +
Sbjct: 283 SDAILRTSIIVGFPGETRKDFDETLKFIKEVKFDRLGAFIYSDEEEASSFSLSGKVPREI 342

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVLNS 442
             ERL  L     +     N+  VG+ ++VL ++  +E G L+GRS    P + + V   
Sbjct: 343 AEERLEELMDIQSQISFEKNEKLVGKKLKVLFDE--EEDGVLIGRSYMDAPEIDANVFVR 400

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
                G    V+IT   I  L GE+V
Sbjct: 401 GEFKKG-FFDVKITSADIYDLEGEIV 425


>gi|167752159|ref|ZP_02424286.1| hypothetical protein ALIPUT_00401 [Alistipes putredinis DSM 17216]
 gi|167660400|gb|EDS04530.1| hypothetical protein ALIPUT_00401 [Alistipes putredinis DSM 17216]
          Length = 433

 Score =  343 bits (880), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 124/445 (27%), Positives = 209/445 (46%), Gaps = 18/445 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +R    + GC++N  +S  +   F + G+ RV   + AD+ V+N+C + E A +K  + +
Sbjct: 4   RRVNFHTLGCKLNFSESSTLAREFEAGGFIRVGVSEAADISVINSCSVTEHADKKCRNLI 63

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            +I        +     ++VV GC AQ + +EI      V++V+       L   +    
Sbjct: 64  RKIH-------RRNPAAIIVVTGCYAQLKPQEIAS-IEGVDLVLSNNDKGELFRRVAALA 115

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
                  T    E+    L+     ++      AFL +Q+GCD  C +C + Y RG   +
Sbjct: 116 GKGPAQFTSCDAEE----LTNFFAAFSSGDRTRAFLKVQDGCDYKCAYCTIHYARGASRN 171

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
             ++ +V EA ++   G  EI + G N     G         F DLL +L+E++G+ R R
Sbjct: 172 MPIADLVKEAEQIAAAGQREIVITGINT----GDFGRTTGERFIDLLRALNEVEGIERYR 227

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
            ++  P  ++D +I           + H+P+QSGSD +L  M RR+T  ++ + I+ +R 
Sbjct: 228 ISSIEPNLLTDEIIAFCASSPKFQHHFHIPLQSGSDSVLARMRRRYTTEKFAERIEAVRR 287

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           + PD  I  D IVGFPGET+ DFR T + ++++  A    F +S R GTP  +  ++V  
Sbjct: 288 LMPDAFIGIDVIVGFPGETESDFRTTYEFLERLAPAYLHIFPFSERPGTPAVDFPDKVQP 347

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
           +V   R+  L++  R     F     G   EVL E   +  G + G +   + V      
Sbjct: 348 SVATRRVEELEELCRRLHGEFCARAEGTTDEVLFESTMR-GGMMFGYTGNYRRVKAPYDR 406

Query: 445 HNIGDIIKVRITDVKI-STLYGELV 468
             I  I +VR+  +   + L GE+V
Sbjct: 407 SRINTICRVRLGRMDDANDLEGEIV 431


>gi|74003946|ref|XP_849433.1| PREDICTED: similar to CDK5 regulatory subunit associated protein
           1-like 1 isoform 3 [Canis familiaris]
          Length = 578

 Score =  343 bits (880), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 112/456 (24%), Positives = 208/456 (45%), Gaps = 18/456 (3%)

Query: 15  SQIVDQCIVP-QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIR 73
           S   D  I   Q+ +++++GC  N  D   M     + GYE   +  +ADL +LN+C ++
Sbjct: 52  SPPSDSTIPGIQKIWMRTWGCSHNNSDGEYMAGQLAAYGYEITENASEADLWLLNSCTVK 111

Query: 74  EKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTY 133
             A +   + + + +              +V+AGCV QA+  +   +      ++G Q  
Sbjct: 112 NPAEDHFRNSIKKAQEENKK---------IVLAGCVPQAQPRQDYFKG---LSIIGVQQI 159

Query: 134 YRLPELLERARFGKRVVDTDYSVED-KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTF 192
            R+ E++E    G  V        + K    + +D    RK  +   +++  GC   CT+
Sbjct: 160 DRVVEVVEETIKGHSVRLLGQKKANGKRLGGARLDLPKIRKNPLIEIISVNTGCLNACTY 219

Query: 193 CVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLY 252
           C   + RG   S  + ++V+ A++    GVCEI L  ++  A  G+ +          L 
Sbjct: 220 CKTKHARGNLASYPIDELVERAKQSFQEGVCEIWLTSEDTGA-YGRDIGTNLPALLWKLV 278

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
            +     ++RL  T           +    +   +  +LH+PVQS SD +L  M R +  
Sbjct: 279 EVIPEGAMLRLGMTNPPYILEHLEEMAKILNHPRVYAFLHIPVQSASDTVLMEMKREYCV 338

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
            ++++++D ++   P I +++D I GFPGETD DF+ T+ LV+   +   F  ++ PR G
Sbjct: 339 ADFKRVVDFLKEKVPGITLATDIICGFPGETDQDFQETVKLVEDYKFPSLFINQFYPRPG 398

Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS 432
           TP + M+ QV   VK +R   L +       +  D  +G+  +VL+ +   +    V  +
Sbjct: 399 TPAAKMV-QVPAQVKKQRTKDLSRVF--HSYNPYDHKIGERQQVLVTEESFDSKFYVAHN 455

Query: 433 PWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            + + V++      +G +I+V I +     + G+ V
Sbjct: 456 RFYEQVLVPKNPTFMGKMIEVDIYESGKHFMKGQPV 491


>gi|254501602|ref|ZP_05113753.1| MiaB-like tRNA modifying enzyme [Labrenzia alexandrii DFL-11]
 gi|222437673|gb|EEE44352.1| MiaB-like tRNA modifying enzyme [Labrenzia alexandrii DFL-11]
          Length = 422

 Score =  343 bits (879), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 138/448 (30%), Positives = 217/448 (48%), Gaps = 36/448 (8%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
              V ++GC++N Y+S  M+    + G +        D I++NTC +  +A  +    + 
Sbjct: 2   TIDVVTFGCRLNSYESEVMKREAEAAGLK--------DAILINTCAVTNEAVRQARQAVR 53

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           + +       ++  D  V+V GC AQ E +        V++V+G           + A F
Sbjct: 54  KAK-------RDNPDAKVIVTGCAAQTETDT-FSEMDEVDLVLGNTEKLERKSYADVAAF 105

Query: 146 G-----KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           G     K  V+   SVE+    L  +DG   R R   AF+ +Q GCD  CTFC++PY RG
Sbjct: 106 GISETEKVRVNDIMSVEETAGHL--IDGLTGRAR---AFVQVQNGCDHRCTFCIIPYGRG 160

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
              S  +  V+D+ ++L+DNG  EI L G ++ +  G  L GE    +     L  +  L
Sbjct: 161 NSRSVPMGVVIDQIKRLVDNGYNEIVLTGVDITS-YGADLPGEPKLGTLTAKILKMVPDL 219

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            RLR ++    +  + L++   D   LMP+ HL +Q+G D ILK M RRH   +  +  +
Sbjct: 220 KRLRLSSIDSIEADEDLMQVIADDHRLMPHFHLSLQAGDDMILKRMKRRHLRGDTIKFCE 279

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
            +R +RPD+   +D I GFP ET++ F  ++ +VD+ G      F +SPR GTP + M  
Sbjct: 280 DVRKMRPDVVFGADIIAGFPTETEEMFLNSLKIVDECGLTHLHVFPFSPRPGTPAARMP- 338

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440
           Q+D ++  ER   L++K  +         VG++  VLIEK G      +GR+     V L
Sbjct: 339 QLDRSIIKERGARLREKGAQVLAQHLAMEVGKVRPVLIEKEG------LGRTEQFTQVEL 392

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                  GDI++ RI       L GE +
Sbjct: 393 AGGTA--GDIVETRIIGHTGRHLLGEAL 418


>gi|319407229|emb|CBI80868.1| putative enzyme [Bartonella sp. 1-1C]
          Length = 437

 Score =  343 bits (879), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 137/461 (29%), Positives = 212/461 (45%), Gaps = 38/461 (8%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           +V  R    S GC   + DS R+     S+GYE  N    ADL+++NTC   + A ++  
Sbjct: 1   MVAPRISFVSLGCPKALVDSERIITRLRSEGYEISNKHKGADLVIVNTCGFIDSARKESL 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           + +               +  V+V GC+  AE   IL+  P V  + GPQ Y  +   + 
Sbjct: 61  ANIDEA---------IKNNGKVIVTGCLG-AEPNIILQAHPNVLAITGPQDYESVIRAVH 110

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
                         V D F  L    G     R   A+L I EGC   C+FC++P  RG 
Sbjct: 111 TV---------IPPVHDPFLDLVPPQGIRLTPRHY-AYLKISEGCSNRCSFCIIPTLRGN 160

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE---------KCTFSDLLY 252
            ISR +S V+ EA KL+  GV E+ ++ Q+  A  G  L            K  F DL  
Sbjct: 161 LISRPISDVLREAEKLVLAGVKELLVISQDTGA-YGIDLKYAASVWQNRVIKTKFLDLCR 219

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
            L E+   VR+ Y   +P       + A G    ++PYL +P Q  S  +L++M R    
Sbjct: 220 ELGEMGIWVRMHYVYPYPHIDEAIELMAAG---KILPYLDIPFQHASPNVLRNMKRPAHV 276

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
            +  + I+R R + PD+ + S FIVGFPGET++DF   ++ +++    +A  FKY    G
Sbjct: 277 EKISRRIERWREICPDLTLRSTFIVGFPGETNEDFNMLLEWLEEAKIERAGCFKYEAVKG 336

Query: 373 TPGSNM-LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE--KGKLV 429
              +N+ LE + E VK +R      K ++         +G+ ++VLI++   +  KG+  
Sbjct: 337 AVANNLGLENIAEEVKEKRWHRFMTKQQKISAHLLKKKIGKRLQVLIDETQGKIAKGRSK 396

Query: 430 GRSPWLQSVVLNS--KNHNIGDIIKVRITDVKISTLYGELV 468
             SP +  +V  S  K   IG+ + V+I       LYG ++
Sbjct: 397 YDSPEIDGIVHISSRKPLRIGEFVTVKIEQSDSYDLYGNVI 437


>gi|160915016|ref|ZP_02077229.1| hypothetical protein EUBDOL_01023 [Eubacterium dolichum DSM 3991]
 gi|158432815|gb|EDP11104.1| hypothetical protein EUBDOL_01023 [Eubacterium dolichum DSM 3991]
          Length = 435

 Score =  343 bits (879), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 124/443 (27%), Positives = 215/443 (48%), Gaps = 19/443 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + F + + GC++N Y+S   E     +GY  V+  + AD+ ++NTC +   AA K    +
Sbjct: 2   KTFAIATLGCKVNTYESQGYEAALLERGYTEVSFKEKADIYIINTCAVTNTAASKSRQKI 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            +   L            + V GC  Q+  +++      V+++VG +    L + +E   
Sbjct: 62  HQAHAL-------NPTACIAVVGCYVQSNHDQVAD-IDGVSILVGSKGKSMLVDQIEAYL 113

Query: 145 FGKRVVD--TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            G+ V +   D      FE L +    +  +    AFL IQ+GC++FC++C++PY RG E
Sbjct: 114 QGQSVCEERIDARSISAFEALKVERFEHQTR----AFLKIQDGCNQFCSYCIIPYARGAE 169

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            S +  QV++ A++L++N   EI L G +     G G    +     L   ++E+  L R
Sbjct: 170 RSLAEDQVIESAKQLVNNQHLEIVLTGIHTG-RYGNGT--GRNLLDLLKRLVAEVPKLRR 226

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R ++    ++SD LI    +   +  +LH+P+Q+ S+ +L+ M R +T   + + +  I
Sbjct: 227 IRISSIEMNEISDELIAFMKEEPRIARHLHIPLQAASNTVLQRMRRPYTVEWFMERVAYI 286

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           RS   DI+ISSD I GFP E++++F      ++++  +    F YS R  T  + M   +
Sbjct: 287 RSQIADISISSDVITGFPQESEEEFMEGYRNIEEMQLSFLHVFPYSKRDFTDAAKMPGHL 346

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
           D   K  R   L +  +E   S+    +GQ I VL EK  +  G L G S     V    
Sbjct: 347 DRKTKKARGAKLAQLSKELYTSYKQRFIGQKISVLFEKEVE--GMLFGHSSEYLEVYAKK 404

Query: 443 KNHNIGDIIKVRITDVKISTLYG 465
           +   +  +  V I+++K   LYG
Sbjct: 405 EAGALHTLCDVLISELKDDVLYG 427


>gi|323143992|ref|ZP_08078646.1| ribosomal protein S12 methylthiotransferase RimO [Succinatimonas
           hippei YIT 12066]
 gi|322416241|gb|EFY06921.1| ribosomal protein S12 methylthiotransferase RimO [Succinatimonas
           hippei YIT 12066]
          Length = 441

 Score =  343 bits (879), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 131/448 (29%), Positives = 208/448 (46%), Gaps = 32/448 (7%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R  + S GC  N+ D+ R+  +  ++GY+   + +D DLIV+NTC     A E+    +G
Sbjct: 6   RIGLISLGCAKNLVDTERLTSVLIAKGYQIEANYEDCDLIVVNTCGFISPAVEESLEAIG 65

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           +  +             V+V GC+  A+ + IL+  P V  V GP T   +   + R   
Sbjct: 66  QAVSY---------APKVIVTGCLG-AKAQLILKEYPQVAAVYGPGTRASVLRGI-RTLI 114

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G+   +    V            G        A+L I EGC   C FC++P  RG   SR
Sbjct: 115 GEPPQEAVQHVN---------PSGILLTPPHYAYLKIAEGCRHRCAFCIIPSLRGPLRSR 165

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           +   +  EA  L   GV E+ ++ Q+ ++  G  L   + T S L   L+ +K  +R+ Y
Sbjct: 166 NPDDIYKEASDLTSRGVKELLIIAQD-SSDYGFDLK-NQPTLSQLCKKLASLKRWLRIHY 223

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
                   ++ +++   D  +++PYL +P+Q  S+RILK M R     +    I+  R +
Sbjct: 224 VYPSKE--ANKIVELMADN-IVLPYLDVPLQHASERILKQMRRPGNTEKMLATIENWRKI 280

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
           RPDIAI S FI GFPGET++DF   +  + +    +   F YS   G   ++    V   
Sbjct: 281 RPDIAIRSTFITGFPGETEEDFSELLSFIKEAKLDRVGCFPYSDVDGAAANDFPNPVPLE 340

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSV--V 439
           ++ ER   L +   +       A +G++ +V+I+    E G  VGRS    P +  +  +
Sbjct: 341 IREERAAILMETQEQISREKLKARIGKVYDVVIDTLN-EDGIAVGRSKYEAPDVDGIITI 399

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGEL 467
            N+K    GDI+KV IT      L GEL
Sbjct: 400 HNAKGIREGDIVKVEITASDTHDLQGEL 427


>gi|256111519|ref|ZP_05452533.1| MiaB-like tRNA modifying enzyme YliG [Brucella melitensis bv. 3
           str. Ether]
 gi|265993015|ref|ZP_06105572.1| conserved hypothetical protein [Brucella melitensis bv. 3 str.
           Ether]
 gi|262763885|gb|EEZ09917.1| conserved hypothetical protein [Brucella melitensis bv. 3 str.
           Ether]
          Length = 437

 Score =  343 bits (879), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 137/459 (29%), Positives = 212/459 (46%), Gaps = 42/459 (9%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R    S GC   + DS R+     S+GYE     D ADL+++NTC   + A ++    +G
Sbjct: 5   RVSFVSLGCPKALVDSERIITGLRSEGYEISRKHDGADLVIVNTCGFLDSARDESLEAIG 64

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                         +  V+V GC+  AE + I  R P V  + GPQ Y  +   +     
Sbjct: 65  LA---------LNENGKVIVTGCLG-AEPDVIRERHPNVLAITGPQAYESVMNAVHEVAP 114

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                       D F  L +   G        A+L I EGC   C+FC++P  RG  +SR
Sbjct: 115 ---------PAHDPFVDL-VPPQGVKLTPRHYAYLKISEGCSNRCSFCIIPALRGDLLSR 164

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE---------KCTFSDLLYSLSE 256
            +++V+ EA KLI  GV EI ++ Q+ +A  G  +  +         +  F DL   L E
Sbjct: 165 PINEVLREAEKLIQAGVKEILVISQDTSA-YGLDIKYQEAMWQDRTVRTKFLDLSRELGE 223

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           +   VR+ Y   +P       + A G    ++PYL +P Q  S  +LK+M R     +  
Sbjct: 224 MGVWVRMHYVYPYPHVDEVIPLMAEG---KILPYLDIPFQHASPAVLKNMRRPAHQEKTS 280

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
           + I   R   PD+A+ S FIVG+PGET++DF+  +D +D+    +A  FKY    G   +
Sbjct: 281 RRIQAWRETCPDLAVRSTFIVGYPGETEEDFQMLLDWLDEAKIERAGCFKYEAVKGAKAN 340

Query: 377 NM-LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS--- 432
           ++ LEQV E VK  R      K ++   +     VG+ + V+I++     GK  GR+   
Sbjct: 341 DLGLEQVPEEVKEARWHRFMAKQQQISTNLLKKKVGKRLPVIIDEANGTIGK--GRTRYD 398

Query: 433 -PWLQS-VVLNS-KNHNIGDIIKVRITDVKISTLYGELV 468
            P +   V ++S +   +GDI+ V+I       L+G  V
Sbjct: 399 APEIDGSVHISSRRPLRVGDIVTVKIEASDAYDLHGTAV 437


>gi|317125300|ref|YP_004099412.1| 30S ribosomal protein S12P methylthiotransferase [Intrasporangium
           calvum DSM 43043]
 gi|315589388|gb|ADU48685.1| SSU ribosomal protein S12P methylthiotransferase [Intrasporangium
           calvum DSM 43043]
          Length = 489

 Score =  343 bits (879), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 122/495 (24%), Positives = 210/495 (42%), Gaps = 52/495 (10%)

Query: 17  IVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA 76
                   +   + + GC  N  DS  +     ++G+  V    +AD+ V+NTC   E+A
Sbjct: 2   TPPPPTATRSVALVTLGCTRNEVDSEELAGRLQAEGWTLVEDAAEADVAVVNTCGFVEQA 61

Query: 77  AEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL 136
            +     L    +LK     +G    VV  GC+A+  G+++  + P  + V+G  +Y  +
Sbjct: 62  KKDSIDALLEASDLKA----DGRTRAVVAVGCLAERYGKDLAEQLPEADAVLGFDSYQDM 117

Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVDGGYN------------------------- 171
              L+    G  V    ++  D+   L +                               
Sbjct: 118 SSHLQTILGGGHV--PSHTPGDRRRLLPLTPSARPAEAVRVALPGHGDHPEPYAAGPGPA 175

Query: 172 --------RKR---GVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN 220
                   R R      A L I  GCD+ C+FC +P  RG  +SR  + V+ EAR L   
Sbjct: 176 PASGPRVVRARLDGRPWAPLKIASGCDRRCSFCAIPMFRGAFVSRRPADVIAEARWLAGQ 235

Query: 221 GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKA 280
           GV E+ L+ +N  +  GK L G+      LL  L+ ++G+ R+R +   P ++   L+ A
Sbjct: 236 GVKELFLVSENSTS-YGKDL-GDLGLLEKLLPELTAVEGIERVRVSYLQPAEIRPGLLDA 293

Query: 281 HGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFP 340
                 ++PY  +  Q  S+ +L+ M R  +   +  ++ R+R+  P+  I  + IVGFP
Sbjct: 294 MAGTPGVVPYYDISFQHASEPVLRRMRRFGSRAAFLDLVARVRASAPEAGIRCNVIVGFP 353

Query: 341 GETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLRE 400
           GET+ D       + +        F YS   GT      E+V  +V A+RL  L + + E
Sbjct: 354 GETEADVAELEAFLTEARLDVVGVFGYSDEDGTEAEGHGEKVAADVIADRLERLTRLVEE 413

Query: 401 QQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVL----NSKNHNIGDIIK 452
                 +  +G ++EVL+E+  ++ G+LVGR+    P +  V        +   +GD++ 
Sbjct: 414 LTAQRAEERIGDLVEVLVEEIDEDDGRLVGRAAFQGPDVDGVTYIEPTPGRPTVVGDLVS 473

Query: 453 VRITDVKISTLYGEL 467
             +   +   L  E 
Sbjct: 474 AVVVATEGIDLVAEP 488


>gi|163756447|ref|ZP_02163560.1| possible 2-methylthioadenine synthetase [Kordia algicida OT-1]
 gi|161323555|gb|EDP94891.1| possible 2-methylthioadenine synthetase [Kordia algicida OT-1]
          Length = 450

 Score =  343 bits (879), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 126/454 (27%), Positives = 216/454 (47%), Gaps = 19/454 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++    + GC++N  ++  +   F  +G+E+V+  + AD+ V+NTC + E A +      
Sbjct: 5   KKVAFYTLGCKLNFSETSTIARNFQEEGFEKVDFSEHADMYVINTCSVTENADK------ 58

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R + +     K   D  V   GC AQ + EE+      V++V+G    ++L   +    
Sbjct: 59  -RFKTIVKQAQKVNPDAFVAAVGCYAQLKPEELAAVD-GVDLVLGATEKFKLTSYINDLL 116

Query: 145 F-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
              +R          + E      G Y+      AFL +Q+GCD  CT+C +P  RGI  
Sbjct: 117 SRPERSRGIGEVHSCEIEEADFYVGSYSFGDRTRAFLKVQDGCDYKCTYCTIPLARGISR 176

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK---CTFSDLLYSLSEIKGL 260
           S +L  V+  A+++ +  + EI L G N+    GKG  G K    TF +L+ +L  ++G+
Sbjct: 177 SDTLENVLKNAKEISEKNIKEIVLTGVNIG-DYGKGEFGNKKHEHTFLELVQALDTVEGI 235

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            RLR ++  P  + +  I      +  +P+ H+P+QSGS+ +L+ M RR+    Y   + 
Sbjct: 236 ERLRISSIEPNLLKNETIDFVSKSNTFVPHFHIPLQSGSNTLLRLMRRRYMRELYVDRVR 295

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           +I+ V PD  I  D IVGFPGETD+ F  T + + ++  +    F YS R  T  + M  
Sbjct: 296 KIKEVMPDACIGVDVIVGFPGETDEIFLETYNFLTELDISYLHVFTYSERENTVAAEMEG 355

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440
            V +NV+ +R   L+    +++ +F ++ +G+   VL E   KE G + G +     V  
Sbjct: 356 VVPQNVRKKRSKMLRGLSVKKRRAFYESQLGKTKTVLFEGENKE-GYIHGFTENYVKVKA 414

Query: 441 NSKNHNIGDIIKVRITDVKI-----STLYGELVV 469
                 +  + KV +T +            E+V 
Sbjct: 415 PWNPALVNTLHKVSLTKIDDDGMVRFDFVNEMVA 448


>gi|288800012|ref|ZP_06405471.1| 2-methylthioadenine synthetase [Prevotella sp. oral taxon 299 str.
           F0039]
 gi|288333260|gb|EFC71739.1| 2-methylthioadenine synthetase [Prevotella sp. oral taxon 299 str.
           F0039]
          Length = 431

 Score =  343 bits (879), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 110/449 (24%), Positives = 201/449 (44%), Gaps = 34/449 (7%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEKVYSFLGR 86
           + + GC  N+ DS  +   F + GY   +       ++ V+NTC   E A E+  + +  
Sbjct: 8   IVTMGCSKNLVDSETLMKQFEANGYHCTHDAKRPQGEIAVINTCGFIESAKEESINTILE 67

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
               K      G    + V GC++Q   +E+    P V+   G   Y +L   L +    
Sbjct: 68  FIQAKEE----GRLNKLYVMGCLSQRYKDELEAEMPQVDKFYGKFNYKQLLADLGK---- 119

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
                  +      +R       Y       A+L I EGC++ C +C +P   G   SR 
Sbjct: 120 ------SFIPSCDGQRHLTTPRHY-------AYLKISEGCNRQCAYCAIPAMTGKHQSRK 166

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
              +++E ++L+  GV E+ ++ Q +  + G  LDG +   ++L+ +++++ G+  +R  
Sbjct: 167 KEDIINEVKELVAQGVKELQIIAQELT-YYGVDLDGRRQ-VAELIEAIADVPGVQWIRLH 224

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
            ++P +    L+        +  YL + +Q  SD +L  M R  +  E   +I +IR   
Sbjct: 225 YAYPNEFPLELLDVMRRKSNVCKYLDIALQHISDPVLAKMKRNVSKEETLNLIKKIREAV 284

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQVDEN 385
           P I + +  +VG PGET + F+  +D V +  + +  +F YS   GT  + +  +++   
Sbjct: 285 PGIHLRTTLMVGHPGETKEAFQELLDFVRETRFERMGAFAYSEEEGTYSACHYEDEISAE 344

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVVLN 441
            K  RL  L    +E      +  VG+++  +I++  KE    +GR    SP +   +L 
Sbjct: 345 EKQRRLDDLMALQQEISSEIEEEKVGKVLLTVIDR--KEGDYYIGRSEFCSPEVDPEILI 402

Query: 442 --SKNHNIGDIIKVRITDVKISTLYGELV 468
             ++   IG    V+IT+     LYGE+V
Sbjct: 403 PATRRLRIGTFYNVKITNSDAFDLYGEIV 431


>gi|269118813|ref|YP_003306990.1| MiaB-like tRNA modifying enzyme [Sebaldella termitidis ATCC 33386]
 gi|268612691|gb|ACZ07059.1| MiaB-like tRNA modifying enzyme [Sebaldella termitidis ATCC 33386]
          Length = 430

 Score =  343 bits (879), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 123/446 (27%), Positives = 225/446 (50%), Gaps = 18/446 (4%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + ++    + GC++N Y++  ++  F   GY  V   D AD+ V+NTC +   A +K   
Sbjct: 3   ISKKVAFYTLGCKVNQYETEIIKKDFLENGYNEVEFEDRADVYVINTCTVTSIADKKNKK 62

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            L R +       K   D +V+  GC AQ   E++ +    V+ ++G      + ++  +
Sbjct: 63  MLRRAK-------KINPDSVVIATGCYAQTNVEDL-KEIKEVDYIIGNVKKEEVYKIFSK 114

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
                +V +     E   ++ ++       +    AF+ IQ+GC KFC++C +PY RG+ 
Sbjct: 115 KLSNYQVDNIFDQKEYSSQKYAVS------RDKARAFVKIQDGCTKFCSYCKIPYARGMS 168

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR    V++E + L + G  EI + G N+ +  G    GE   F  +L  + +I+ + R
Sbjct: 169 RSRQPESVLEEIKFLGEAGYKEIVVTGINL-SEYGSDF-GENINFDYILEKILKIEEIDR 226

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R ++ +P  +S+  I    +   LMP+LH+ +QS  D+ILK M R + A    +++ ++
Sbjct: 227 VRVSSVYPDTLSEKFISLLKENKKLMPHLHVSIQSLDDKILKLMKRNYRAEFVVELLKKV 286

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           +   PD AI++D I GFP E +++F  T + + KI ++    F YS R  T  +    ++
Sbjct: 287 QEEVPDSAITADIITGFPQEEEENFWNTFENMKKINFSDFHIFPYSDREKTAAAAFTGKI 346

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
           +  VK ER+  L+K  + +   F +  +  + +V IE+   + GK  G +     V +NS
Sbjct: 347 EPEVKKERVKILEKLKKSKIKEFREKFLDTVQKVYIEEI--KAGKAYGYTENYLRVEVNS 404

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
            +H + DI++V+I       L GE++
Sbjct: 405 VSHKVADIVEVKIMSSAGDLLKGEVI 430


>gi|241762301|ref|ZP_04760382.1| MiaB-like tRNA modifying enzyme YliG [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|241373204|gb|EER62834.1| MiaB-like tRNA modifying enzyme YliG [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
          Length = 443

 Score =  342 bits (878), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 120/462 (25%), Positives = 208/462 (45%), Gaps = 36/462 (7%)

Query: 17  IVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA 76
           ++ +     +  + S GC   + DS R+     S+GY   +  D+AD++++NTC   + A
Sbjct: 1   MIKKLPTSPKIGMVSLGCPKALVDSERILTKLRSEGYNLSSQYDEADVVLVNTCGFIDSA 60

Query: 77  AEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL 136
            E+    +G              +  V+V GC+   E + I  R P +  + G Q Y  +
Sbjct: 61  KEESLDAIGEA---------MAENGRVIVTGCLGN-EADRIRERFPDILAITGAQQYEEV 110

Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
              +  A   +     D           + + G        ++L I EGC+  C+FC++P
Sbjct: 111 VSAVHDAAPIEASPYVDL----------VPEQGLKLTPRHYSYLKISEGCNHRCSFCIIP 160

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW--------RGKGLDGEKCTFS 248
             RG  +SR    ++ EA KL+  G  E+ ++GQ+ +A+                K   +
Sbjct: 161 SLRGDLVSRRADAILREAEKLVAAGTKELLVIGQDSSAYGVDLRHQEYRWKDRMVKADLT 220

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
           DL+  L E+   VRL Y   +P   +   + A G   +++PYL +P Q  S  +LK M R
Sbjct: 221 DLVRGLGELGAWVRLHYVYPYPHVDTLIPLMAEG---LILPYLDIPFQHASPSVLKRMKR 277

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
                +    + + R + PDIA+ S F+VGFPGET+ DF+  +D +D+    +  +F++ 
Sbjct: 278 PANEVKILDRLTKWREIVPDIALRSSFVVGFPGETEQDFQYLLDWLDEAQLDRVGAFRFE 337

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI---EKHGKEK 425
              G   +     V E VK ER   L +K  +   +   A +G+ I  +I   +  G   
Sbjct: 338 AVEGAAANAFDGAVPEEVKNERYQRLMEKAAQISEAKLQAKIGRDIATIIDRTDGEGGAS 397

Query: 426 GKLVGRSPWLQSVVL--NSKNHNIGDIIKVRITDVKISTLYG 465
           G+    +P +   V   ++ +  IGDI+ +R+ D     L+G
Sbjct: 398 GRSYADAPEIDGEVHLRDADDLKIGDIVTIRVEDADEHDLFG 439


>gi|254460309|ref|ZP_05073725.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Rhodobacterales
           bacterium HTCC2083]
 gi|206676898|gb|EDZ41385.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Rhodobacteraceae
           bacterium HTCC2083]
 gi|297184460|gb|ADI20575.1| hypothetical protein [uncultured alpha proteobacterium
           EB080_L84F03]
          Length = 463

 Score =  342 bits (878), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 123/481 (25%), Positives = 203/481 (42%), Gaps = 38/481 (7%)

Query: 1   MGLFIKLIGVAHMVSQIVDQCIVP--QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNS 58
           M      +      S  +     P   R  + S GC   + DS R+     ++GY     
Sbjct: 1   MTQNPPSLRPDLAPSAKLPDAARPGQPRIGMVSLGCPKALVDSERILTRLRAEGYGISPD 60

Query: 59  MDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEIL 118
              AD +++NTC   + A  +    +G                 V+V GC+  AE + I 
Sbjct: 61  YSGADAVIVNTCGFLDSAKAESLDAIGEALQENGK---------VIVTGCLG-AEPDYIR 110

Query: 119 RRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTA 178
              P +  V GP  Y ++ + +  A              D F  L    G     R   +
Sbjct: 111 EHHPKILAVTGPHQYEQVLDAVHSAAP---------PSPDPFVDLLPTSGVSLTPRHY-S 160

Query: 179 FLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW--- 235
           +L I EGC+  C FC++P  RG   SR    V+ EA KL+++GV E+ ++ Q+ +A+   
Sbjct: 161 YLKISEGCNHKCKFCIIPDMRGRLASRPAHAVLREAEKLVESGVKELLVISQDTSAYGLD 220

Query: 236 ----RGKGLDGE-KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV-LMP 289
                    DGE +   +DL   + ++   VRL Y   +P      LI    D +  L+P
Sbjct: 221 RKYDVNPWKDGEVRSHITDLSREMGKLGAWVRLHYVYPYPSV--RELIPLMADPESGLLP 278

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           YL +P Q     +LK M R     +    I   R+  PDI + S FIVG+PGET+ +F+ 
Sbjct: 279 YLDIPFQHAHPDVLKRMARPAAGSKTLDEIAAWRATCPDITLRSTFIVGYPGETEQEFQT 338

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDAC 409
            +D +D+    +   F+Y    G   + + + V   VK ER     +K +    +   A 
Sbjct: 339 LLDWMDEAQLDRVGCFQYENVDGARSNALPDHVPNEVKQERWDRFMEKAQAISEAKLAAK 398

Query: 410 VGQIIEVLIEKHGKEKG--KLVGRSPWLQSVVLNSKNH---NIGDIIKVRITDVKISTLY 464
           VG  +EV++++   E    +    +P +   +   + +   N+GDI+ V + +     L+
Sbjct: 399 VGTRMEVIVDEIDDEAATCRTKADAPEIDGNLFIDEGYEGLNVGDIVTVTVDEAGEYDLW 458

Query: 465 G 465
           G
Sbjct: 459 G 459


>gi|254471140|ref|ZP_05084543.1| MiaB-like tRNA modifying enzyme [Pseudovibrio sp. JE062]
 gi|211960282|gb|EEA95479.1| MiaB-like tRNA modifying enzyme [Pseudovibrio sp. JE062]
          Length = 422

 Score =  342 bits (878), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 138/445 (31%), Positives = 219/445 (49%), Gaps = 36/445 (8%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V ++GC++N Y+S  M+    + G +        D +++NTC +  +A  +    + + R
Sbjct: 5   VVTFGCRLNAYESEVMKSEAEAAGLK--------DAVLINTCAVTNEAVRQARQTIRKTR 56

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG-- 146
                  +E  +  ++V GC AQ E  E       V++V+G             A+FG  
Sbjct: 57  -------RENPNARIIVTGCAAQTE-AETFAEMGEVDLVLGNSEKLERASYGRVAQFGIE 108

Query: 147 ---KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
              K  V+   SV +    L  +DG   R R   AF+ +Q GCD  CTFC++PY RG   
Sbjct: 109 ETEKVRVNDIMSVRETAGHL--IDGLEGRSR---AFVQVQNGCDHRCTFCIIPYGRGNSR 163

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           S  +  V+D+ ++L+DNG  EI L G ++ +  G  L GE    +     L  I  L RL
Sbjct: 164 SVPMGVVIDQIKRLVDNGYGEIVLTGVDITS-YGADLPGEPKLGTLCAKILKLIPDLKRL 222

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R ++    +  D L++       LM +LHL +Q+G + ILK M RRH+  +  +  + +R
Sbjct: 223 RLSSIDSIEADDELMEVIAHDHRLMSHLHLSLQAGDNMILKRMKRRHSREDTIRFCEDVR 282

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
            +RPD+   +D I GFP ETD+ F  T+ +VD+ G      F +SPR GTP + M  Q+D
Sbjct: 283 KMRPDVVFGADIIAGFPTETDEMFENTLRIVDECGLTHLHVFPFSPRPGTPAARMP-QLD 341

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
             +  ER   L+ K +E  ++   A VG+  E+LIE+ G      +GR+     V L++ 
Sbjct: 342 RKIIKERAARLRIKGQEALLAHLRAEVGKKREILIEREG------LGRTEQFTQVELDA- 394

Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468
            +  G ++  RIT      L  E +
Sbjct: 395 -NIAGSLVSARITGHTERHLIAEPI 418


>gi|260494169|ref|ZP_05814300.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Fusobacterium sp. 3_1_33]
 gi|260198315|gb|EEW95831.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Fusobacterium sp. 3_1_33]
          Length = 435

 Score =  342 bits (878), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 119/445 (26%), Positives = 224/445 (50%), Gaps = 20/445 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++    + GC++N Y++  +++    +GYE V     +D+ ++N+C +   A  K  + L
Sbjct: 5   KKVAFHTLGCKVNQYETESIKNQLIKRGYEEVPFEGKSDIYIINSCTVTSIADRKTRNML 64

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R +       K   +  V+V GC AQ    EIL     V+ V+  +    +   +E   
Sbjct: 65  RRAK-------KINPNAKVIVTGCYAQTNSREIL-EIEDVDFVIDNKNKSNIVNFVEAIE 116

Query: 145 --FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
               +R  + +   E +++           +    A++ IQ+GC+ FC++C +P+ RG  
Sbjct: 117 DISFEREKNGNIFQEKEYQEYEFATL----REMTRAYVKIQDGCNHFCSYCKIPFARGKS 172

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR    ++ E  KL+++G  E+ L+G +++A  G+  + EK +F  LL  + +I+ L R
Sbjct: 173 RSRKKENILKEIEKLVEDGFKEVILIGIDLSA-YGEDFE-EKDSFESLLEDILKIRDLKR 230

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R  + +P  ++D  I+   +   LMP+LH+ +QS  D +LK+M R + +   R  + ++
Sbjct: 231 VRIGSVYPDKITDRFIELFKN-KNLMPHLHISLQSCDDTVLKNMRRNYGSLLIRDNLLKL 289

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           +S   ++  ++D IVGFP E +  F+ T D++ +I ++    F+YS R GT  SNM  +V
Sbjct: 290 KSKIKNMEFTADVIVGFPKEDETMFQNTYDVIREIKFSGLHIFQYSDREGTIASNMDGKV 349

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
           D   K +R   L    +E  +      + + +EVL+E+  ++ G+  G S     V   S
Sbjct: 350 DAKTKKQRADRLDSLKQEMLIESRKKYLEKNLEVLVEE--EKDGEYFGYSQNYLRVKFKS 407

Query: 443 KN-HNIGDIIKVRITDVKISTLYGE 466
                I  +I ++I  ++ + L GE
Sbjct: 408 DEKELINKLINIKIKCIENNVLIGE 432


>gi|78222094|ref|YP_383841.1| MiaB-like tRNA modifying enzyme [Geobacter metallireducens GS-15]
 gi|78193349|gb|ABB31116.1| MiaB-like tRNA modifying enzyme [Geobacter metallireducens GS-15]
          Length = 431

 Score =  342 bits (878), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 137/436 (31%), Positives = 219/436 (50%), Gaps = 15/436 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           QR  + + GC++N ++S  M +    +G+  V   +DAD+ V+NTC +  K   +    +
Sbjct: 2   QRVAISTLGCKINQFESAAMTESLGREGFRVVPFDEDADIYVINTCTVTAKTDAESRRLI 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
                     ++      VVV GC AQ   + +    P V +VVG      + ELL  A 
Sbjct: 62  -------RRALRRNPAARVVVTGCYAQVAPDAVKD-LPGVALVVGNSEKRSIGELLRDAA 113

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
             ++V+ +D S E   E L +     +      AFL +Q GCD FC++C+VPY RG   S
Sbjct: 114 PAEKVMVSDISRERTAEGLRL----ESFAEHTRAFLQVQNGCDAFCSYCIVPYARGRSRS 169

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
            S S+ +   R     G  E+ L G ++ A  G  L         LL +    K + RLR
Sbjct: 170 VSFSEALAGIRNFAAQGFREVVLTGIHLGA-YGLDL-APPTNLLALLEASEAEKAVPRLR 227

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
             +  P +++D L+      + + P+LH+P+QSG DR+L+ M RR+TA  +R+ ++R+ +
Sbjct: 228 VGSVEPNELTDALVDFLARSETVCPHLHIPLQSGDDRVLERMGRRYTAAFFRERVERLVA 287

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           V PDI I  D I GFPGETD++F+ T+ L++++  A    F YS R GT  + M  QVD 
Sbjct: 288 VVPDIFIGCDVIAGFPGETDEEFQNTVRLIEELPVASLHVFPYSRREGTAAARMEGQVDG 347

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
            V   R   L++    ++ SF +  VG+ + VL++  G++ G+ VG S     V +    
Sbjct: 348 KVIRGRAEILREVGERKRRSFCERFVGRELAVLMQNRGRD-GEAVGLSRNYLPVRVPGYA 406

Query: 445 HNIGDIIKVRITDVKI 460
             +     V +T+V  
Sbjct: 407 GEMNAEATVMVTEVTP 422


>gi|289524260|ref|ZP_06441114.1| MiaB tRNA modifying enzyme-like protein [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
 gi|289502916|gb|EFD24080.1| MiaB tRNA modifying enzyme-like protein [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
          Length = 435

 Score =  342 bits (878), Expect = 7e-92,   Method: Composition-based stats.
 Identities = 122/454 (26%), Positives = 213/454 (46%), Gaps = 29/454 (6%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + +R F+ S GC  N  DS ++     S+G+      + AD+I++NTC     A ++   
Sbjct: 1   MKERVFIVSLGCAKNQVDSEKLAGAMTSKGFGFAEDFESADIILVNTCAFIGPAVKESID 60

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +  +  LK      G    + V GC+    G+++ R  P V++    + +  +   L  
Sbjct: 61  VILHLEELKG----LGKVKKIGVLGCLLNRYGDDLKREFPTVDIWARSEEWEHVLSCLG- 115

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
                 V DT +S            G        + +L I EGC+  C++C +P  RG  
Sbjct: 116 ------VNDTSFS--------PCSRGFIPETTTWSRYLKITEGCNNCCSYCTIPSIRGHL 161

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE-IKGLV 261
            SR + ++++EA  L+  G  EI L+GQ++ A  G   DG      +LL  L + +   +
Sbjct: 162 RSRPVDEILEEAENLVLQGAKEICLVGQDLTA-YGMDWDGS-SHLVELLDLLEKHVPDGM 219

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
            +R    HP  +++  ++       ++ YL +P+Q   D IL  MNR  T  + R+I   
Sbjct: 220 WIRPLYLHPMRVNEKFLERIASYKNVLRYLDIPIQHVDDEILSCMNRNVTESDLRRIFSY 279

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
            R + PD A+ +  IVGFPGE +  F+  +  ++ +   +  +F YSP  GT  + + +Q
Sbjct: 280 ARKIDPDFALRTTIIVGFPGEDNVKFKKVLRFLEDMEIDRVGAFLYSPEEGTKAAGIKKQ 339

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQS 437
           V + VK +RL  L +   +  +S  +  +G+ ++V++E+   E   L GRS    P +  
Sbjct: 340 VSDEVKRKRLDMLMELQADISLSRQERFLGRRLKVIVEERNYEDCVL-GRSFREAPEVDG 398

Query: 438 VVLNSKNHNI--GDIIKVRITDVKISTLYGELVV 469
           V+      ++  GD + VRI  V    +  E+VV
Sbjct: 399 VIAIKGVKDVPCGDFLNVRINAVTEHDMEAEVVV 432


>gi|149196637|ref|ZP_01873691.1| hypothetical protein LNTAR_09104 [Lentisphaera araneosa HTCC2155]
 gi|149140317|gb|EDM28716.1| hypothetical protein LNTAR_09104 [Lentisphaera araneosa HTCC2155]
          Length = 469

 Score =  342 bits (878), Expect = 7e-92,   Method: Composition-based stats.
 Identities = 109/474 (22%), Positives = 201/474 (42%), Gaps = 34/474 (7%)

Query: 23  VPQ--RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKV 80
           +P+  +  V S GC  N+ D+  M       G      ++DAD+ V+NTC   E A ++ 
Sbjct: 1   MPKTAKICVSSLGCAKNLVDTEVMLGSMAKSGVVITGDLNDADIFVVNTCSFIEGARQES 60

Query: 81  YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140
            + +           K+     VVVAGC+ Q   EE  +  P V++ +G      +  ++
Sbjct: 61  NAAIMDAIT----WKKKRKSRKVVVAGCLPQRSPEETKKNHPDVDLFLGLDDVASIGTMV 116

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
                    ++T    +                    A++ I EGC+  C+FC +P  RG
Sbjct: 117 NNLLRKMPTMNTIQKDDLPVYLYDENTPRLLVTPSHYAYIKISEGCNHKCSFCAIPTFRG 176

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK-G 259
              SR++  +V EA+ L++ GV EI L+ Q+   +     DG   + ++LL +L ++   
Sbjct: 177 KLRSRTIESIVKEAQALLNRGVREIILVSQDSTGYGSDLKDG--SSTAELLKALDKLDCD 234

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
              +R    +P  ++D LI+       +  Y+ +P+Q G+D++LK+M R  T      ++
Sbjct: 235 EYWVRLLYLYPTTVTDELIETFAQSKHIAKYIDMPLQHGADKVLKTMRRGITRKRTEILL 294

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
           D+ R   P + + +  +VG PGE +++F+  +D V +  + +   F YS    T   ++ 
Sbjct: 295 DKFRKAMPGVVMRTTLLVGHPGEGEEEFQECLDFVKEQQFDRLGVFTYSHEENTHARSLE 354

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKH------------------ 421
           +  D    A R   +    +E     N    GQ + V++++                   
Sbjct: 355 DFTDPETSAARRDQIMAVQQEISYEKNQRFAGQDLRVIVDEAFLKTDIDPNDERFDEAIM 414

Query: 422 GKEKGKLV-----GRSPWLQ-SVVLNSKNHNI-GDIIKVRITDVKISTLYGELV 468
            +     V     G +P +   V  ++    +    + V I +     LYG+LV
Sbjct: 415 EEAGDYYVLSRTEGDAPDVDNLVHFSADEAILDQQFLTVHIEEATDYDLYGQLV 468


>gi|156382226|ref|XP_001632455.1| predicted protein [Nematostella vectensis]
 gi|156219511|gb|EDO40392.1| predicted protein [Nematostella vectensis]
          Length = 555

 Score =  342 bits (877), Expect = 8e-92,   Method: Composition-based stats.
 Identities = 124/460 (26%), Positives = 210/460 (45%), Gaps = 26/460 (5%)

Query: 15  SQIVDQCIVP--QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHI 72
              V   I+P  Q  +V+++GC  N  DS  M     + GY+  +    ADL +LN+C +
Sbjct: 50  EVPVGDSIIPGTQTIYVRTWGCSHNNSDSEYMAGQLAAYGYKITDDEQCADLWLLNSCTV 109

Query: 73  REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT 132
           +  A +   + + + +              +VVAGCV Q +      +   V   VG Q 
Sbjct: 110 KSPAEDGFRNAIKKAKA---------QGKHLVVAGCVPQGQPRHDTVKGISV---VGVQQ 157

Query: 133 YYRLPELLERARFGKRVVDTDYSVED-KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCT 191
             R+ E++E    G  V        D K    + +D    RK  +   + I  GC   CT
Sbjct: 158 IDRVVEVVEETLKGHTVRLFGQKKADGKKTGGASLDLPKIRKNPLVEIIAINTGCLNQCT 217

Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLL 251
           +C   + RG   S    ++V+ A++  + GV E+ L  ++  A  GK +     T  +LL
Sbjct: 218 YCKTKHARGDLGSYPPEEIVNRAKQAFNEGVVEMWLTSEDTGA-YGKDI---GVTLPELL 273

Query: 252 YSLSE-IKGLVRLRYTTSHPRDMSDCL--IKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
           + L + I    R+R   ++P  + + L  +    +   +  +LH+PVQS S  +L  M R
Sbjct: 274 WQLVKVIPEGGRMRIGMTNPPYILEHLEEMAKILNHPRVYSFLHVPVQSASTNVLADMKR 333

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
            + A ++  +++ +R   PD+ I++D I GFP ET+DDF+ T+DLV K  +   F  ++ 
Sbjct: 334 EYIAEDFEHVVNYLRQRVPDLTIATDLICGFPTETEDDFQKTLDLVKKYKFPSLFINQFY 393

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL 428
           PR GTP + M +++       R   + K    Q  +  D  VG + EVL+ +   +    
Sbjct: 394 PRPGTPAARM-KRLPTEEVKRRTREVSKLF--QSYTTYDHKVGAVQEVLVTEESHDGVHY 450

Query: 429 VGRSPWLQSVVLNSKN-HNIGDIIKVRITDVKISTLYGEL 467
           VG +     V++       +G I+KV +T      L G +
Sbjct: 451 VGHNKAYDQVLVKKDEGELMGKIVKVEMTSSGKHYLMGRV 490


>gi|28210972|ref|NP_781916.1| Fe-S oxidoreductase [Clostridium tetani E88]
 gi|75542496|sp|Q895I7|RIMO_CLOTE RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|28203411|gb|AAO35853.1| Fe-S oxidoreductase [Clostridium tetani E88]
          Length = 444

 Score =  342 bits (877), Expect = 8e-92,   Method: Composition-based stats.
 Identities = 134/449 (29%), Positives = 228/449 (50%), Gaps = 22/449 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           ++ V S GC  N  DS  M +    +G    N   +AD+I++NTC   E + ++    + 
Sbjct: 5   KYGVVSLGCDKNRIDSEVMINEIKKEG-IITNDPKEADVIIVNTCGFIEDSKKESIDTIL 63

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA-R 144
            + N KN+  K     ++VV GC++Q  GEE+    P V+V++G   Y +L + ++++  
Sbjct: 64  EMSNYKNNNCK-----VLVVTGCLSQRYGEELQELLPEVDVMLGVNDYDKLSDAIKKSIE 118

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G++ +  +YS     E      G     +   A+L I EGCD FCT+C +P  RG   S
Sbjct: 119 KGEKSLYCNYSNTVINEG-----GRVLTTQKHYAYLRIAEGCDNFCTYCAIPKIRGKYRS 173

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R +  +++EA+ L  NGV EI ++ Q+     G  + GEK T   LL  L E+ G+  +R
Sbjct: 174 RKIEDIIEEAKFLSQNGVKEIIIVAQDTT-RYGLDIYGEK-TLPSLLKQLEEVDGIEWIR 231

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
               +P D+++ LI+       L  Y+ +P+Q  SD +LK M R+       +++  I+ 
Sbjct: 232 LLYCYPEDITEELIEEFARNKKLCKYVDVPIQHISDSVLKRMGRKGNKQLVTKVLRDIKK 291

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             P+++I +  IVGFPGE ++DF+   D V++  +     FKYS   GTP + M +QV E
Sbjct: 292 RVPEMSIRTSLIVGFPGEMEEDFKELKDFVEEFKFQNLGVFKYSQEEGTPAATMEDQVLE 351

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVL 440
            +K  R   L K  R+   S N   V ++ +V+++    E    +GR+    P +   + 
Sbjct: 352 EIKETRREELMKMQRDIVKSINADKVNKVYKVVVDNFNGE--HYIGRNYEMLPEIDGAIY 409

Query: 441 NSKN--HNIGDIIKVRITDVKISTLYGEL 467
              +   NIG+++ ++I +     L G +
Sbjct: 410 FKCDKILNIGEMVCIKILETLEYDLIGVV 438


>gi|302558044|ref|ZP_07310386.1| MiaB-like tRNA modifying enzyme YliG [Streptomyces griseoflavus
           Tu4000]
 gi|302475662|gb|EFL38755.1| MiaB-like tRNA modifying enzyme YliG [Streptomyces griseoflavus
           Tu4000]
          Length = 491

 Score =  342 bits (877), Expect = 9e-92,   Method: Composition-based stats.
 Identities = 127/483 (26%), Positives = 212/483 (43%), Gaps = 48/483 (9%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +   + + GC  N  DS  +     + G++ V   ++AD+ V+NTC   E A +     L
Sbjct: 5   RTVALVTLGCARNEVDSEELAGRLEADGWQLVEDAEEADVAVVNTCGFVEAAKKDSVDAL 64

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
               +LK      G    VV  GC+A+  G+E+    P  + V+G   Y  + + L+   
Sbjct: 65  LEANDLKGQ----GRTQAVVAVGCMAERYGKELAEALPEADGVLGFDDYADISDRLQTIL 120

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYN------------------------------RKR 174
            G   +   ++  D+ + L I                                    R+R
Sbjct: 121 NGG--IHASHTPRDRRKLLPISPAERQDSAADVALPGHGPVDLPEGLAPASGPRAPLRRR 178

Query: 175 ---GVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQN 231
                 A + +  GCD+ C+FC +P  RG  ISR  S V++E R L + GV E+ L+ +N
Sbjct: 179 LDGSPVASVKLASGCDRRCSFCAIPSFRGSFISRRPSDVLNETRWLAEQGVKEVMLVSEN 238

Query: 232 VNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL 291
            N   GK L G+      LL  L+E+ G+ R+R +   P +M   LI        ++PY 
Sbjct: 239 -NTSYGKDL-GDIRLLESLLPELAEVDGIERVRVSYLQPAEMRPGLIDVLTSTPKVVPYF 296

Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351
            L  Q  +  +L++M R      + +++D IRS  P   + S+FIVGFPGE+  D     
Sbjct: 297 DLSFQHSAPDVLRAMRRFGDTDRFLELLDTIRSKAPQAGVRSNFIVGFPGESAADLAELE 356

Query: 352 DLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVG 411
             ++         F YS   GT  +    ++DE+V AERL  + +   E      +  VG
Sbjct: 357 RFLNHARLDAVGVFGYSDEEGTEAATYDGKLDEDVVAERLARVSRLAEELVSQRAEERVG 416

Query: 412 QIIEVLIEKHGKEKGKLVGR----SPWLQSVVL--NSKNHNIGDIIKVRITDVKISTLYG 465
           + + VL+E   +E+G + GR    +P     VL  + +  +IG +++ ++   +   L  
Sbjct: 417 ETVHVLVESVDEEEG-VHGRAAHQAPETDGQVLLTSGEGLSIGRMVEAKVIGTEGVDLVA 475

Query: 466 ELV 468
           E +
Sbjct: 476 EPL 478


>gi|154492267|ref|ZP_02031893.1| hypothetical protein PARMER_01901 [Parabacteroides merdae ATCC
           43184]
 gi|154087492|gb|EDN86537.1| hypothetical protein PARMER_01901 [Parabacteroides merdae ATCC
           43184]
          Length = 431

 Score =  342 bits (877), Expect = 9e-92,   Method: Composition-based stats.
 Identities = 112/456 (24%), Positives = 206/456 (45%), Gaps = 34/456 (7%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDD--ADLIVLNTCHIREKAAEK 79
           +   +  + + GC  N+ DS ++   F + GY   +       +++V+NTC     A E+
Sbjct: 1   MRKNKVDIITLGCSKNLVDSEQLMRQFVANGYTVEHDPHKINGEIVVVNTCGFIGDAQEE 60

Query: 80  VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL 139
             + +  +   K    K+G    + V GC+++   +++    P V+   G   +  L   
Sbjct: 61  SINMILDLGEAK----KKGKIGKLFVMGCLSERFLKDLENELPEVDRFYGKFNWKELLND 116

Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           L +           Y  E   +R+      Y       A+L I EGCD+ C++C +P + 
Sbjct: 117 LGK----------SYHRELAADRVLTTPRHY-------AYLKIAEGCDRTCSYCAIPIST 159

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G   S  + ++  E R L+  GV E  ++ Q++  + G  L  ++    +L+  +S+I G
Sbjct: 160 GRYQSIPMEEIEKEVRLLVKQGVKEFQVIAQDLT-YYGLDLY-KRHALPELVERISDIPG 217

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           +  +R    +P      L++   + D +  Y+ + +Q  SD +LK M R  T  E   +I
Sbjct: 218 VEWIRLHYGYPSHFPYDLLRVMSERDNVCKYMDIALQHISDPMLKKMRRNITKEETYALI 277

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            R+R   P I + +  +VG PGET+ DF   ++ V +  + +  +F YS   GT      
Sbjct: 278 RRMREEVPGIHLRTTLMVGHPGETEQDFEELVEFVKEARFERMGAFAYSHEEGTYSFKHY 337

Query: 380 -EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PW 434
            + +D  VK +RL  L +         N + +G++ +V+I++  +E+   VGR+    P 
Sbjct: 338 TDDIDPEVKQDRLDYLMRIQEGISAEVNGSKIGKVFKVMIDR--EEEDFYVGRTEFDSPE 395

Query: 435 LQSVVLNSKNHN--IGDIIKVRITDVKISTLYGELV 468
           +   +L SK      G    V I D +   LYG ++
Sbjct: 396 VDPEILVSKEKLLIPGMFYNVWIDDAQAFDLYGSVL 431


>gi|118591328|ref|ZP_01548726.1| hypothetical protein SIAM614_26813 [Stappia aggregata IAM 12614]
 gi|118436000|gb|EAV42643.1| hypothetical protein SIAM614_26813 [Stappia aggregata IAM 12614]
          Length = 422

 Score =  342 bits (877), Expect = 9e-92,   Method: Composition-based stats.
 Identities = 138/445 (31%), Positives = 216/445 (48%), Gaps = 36/445 (8%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V ++GC++N Y+S  M+    + G +        D I++NTC +  +A  +    + + +
Sbjct: 5   VVTFGCRLNAYESEVMKREAEAAGLK--------DAILVNTCAVTGEAVRQARQAVRKAK 56

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG-- 146
                  ++  +  V+V GC AQ E  E       V++V+G           + A FG  
Sbjct: 57  -------RDNPNARVIVTGCAAQTE-SETFSSMEEVDLVLGNTEKLERKSYQDVAAFGVS 108

Query: 147 ---KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
              K  V+   SVE+    L  +DG   R R   AF+ +Q GCD  CTFC++PY RG   
Sbjct: 109 ETEKVRVNDIMSVEETAGHL--IDGLTGRAR---AFVQVQNGCDHRCTFCIIPYGRGNSR 163

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           S  +  V+D+ ++L+ NG  EI L G ++ +  G  L G     +     L  +  L RL
Sbjct: 164 SVPMGVVIDQIKRLVGNGYNEIVLTGVDITS-YGADLPGTPKLGTLSAKILKMVPELKRL 222

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R ++    +  D L++   + + LMP+LHL +Q+G D ILK M RRH   +  +  + +R
Sbjct: 223 RLSSIDSIEADDDLMRVIAEDERLMPHLHLSLQAGDDMILKRMKRRHLRADTIRFCEEVR 282

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
            +RPD+   +D I GFP ET++ F+ ++ +VD+        F +SPR GTP + M  Q+ 
Sbjct: 283 RLRPDMVFGADIIAGFPTETEEMFQNSLRIVDECDLTHLHVFPFSPRKGTPAARMP-QLP 341

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
            +V  ER   L+ K  E  V    A VG+   VLIEK G      +GR+     V L   
Sbjct: 342 RDVVKERGARLRAKGEEALVRHLQAEVGKTRPVLIEKEG------LGRTEQFTQVELGGG 395

Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468
               G+I++ RI       L GE +
Sbjct: 396 TA--GEIVETRIVGHTGRHLLGEAL 418


>gi|333029245|ref|ZP_08457306.1| MiaB-like tRNA modifying enzyme [Bacteroides coprosuis DSM 18011]
 gi|332739842|gb|EGJ70324.1| MiaB-like tRNA modifying enzyme [Bacteroides coprosuis DSM 18011]
          Length = 438

 Score =  342 bits (877), Expect = 9e-92,   Method: Composition-based stats.
 Identities = 117/446 (26%), Positives = 205/446 (45%), Gaps = 19/446 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++    + GC++N  ++     +    G       + AD+ ++NTC + E A +K    +
Sbjct: 10  KKAAYYTLGCKLNFSETSTFGKILREYGVRTARKNEIADICIINTCSVTEMADKKCRQAI 69

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R+        +E     +VV GC AQ + +EI      V++V+G +      + L    
Sbjct: 70  KRMH-------REHPGAFIVVTGCYAQLKPDEI-TEIEGVDIVLGSEQKKDFIKFLGNLE 121

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
                 D   +   K   +       +R      FL +Q+GCD FCT+C +P+ RG   +
Sbjct: 122 KK----DGAQAYTTKLTDIKTFSPSCSRGNRTRFFLKVQDGCDYFCTYCTIPFARGFSRN 177

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
            S+  +V++A++   +G  EI + G N     G        TF DL+  L E++G+ R R
Sbjct: 178 GSIESIVNQAKQAARDGGKEIVITGVNT----GDFGKTTNETFIDLVKLLDEVEGIERFR 233

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
            ++  P  ++D +I+        MP+ H+P+QSGSD +LK M+RR+    +   +++I++
Sbjct: 234 ISSIEPNLLTDEIIEFVAQSKRFMPHFHIPLQSGSDDVLKLMHRRYDTALFAHKVEKIKA 293

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           + P   I  D IVG  GET   F  ++D ++ +   Q   F YS R GT    +  +V  
Sbjct: 294 LVPHAFIGVDVIVGTRGETQTFFDKSLDFIESLDITQLHVFSYSERPGTMALKIDHEVSP 353

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
             K ER   L     ++  +F +  +GQ + VL EK       + G +P    V + +  
Sbjct: 354 QEKHERSQRLLAISDKKTEAFYEQFIGQEMPVLFEK-AHNSDVMHGFTPNYIRVEIPNHP 412

Query: 445 HNIGDIIKVRITDVKI--STLYGELV 468
               +I  V++ +     + L GEL+
Sbjct: 413 ELDNEIRSVKLGEFNESRTALKGELI 438


>gi|84499563|ref|ZP_00997851.1| RNA modification enzyme, MiaB-family protein [Oceanicola batsensis
           HTCC2597]
 gi|84392707|gb|EAQ04918.1| RNA modification enzyme, MiaB-family protein [Oceanicola batsensis
           HTCC2597]
          Length = 463

 Score =  342 bits (877), Expect = 9e-92,   Method: Composition-based stats.
 Identities = 115/452 (25%), Positives = 197/452 (43%), Gaps = 39/452 (8%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           + S GC   + DS R+     ++GY        AD +++NTC   + A  +    +G   
Sbjct: 31  MVSLGCPKALVDSERILTRLRAEGYAISADYAGADAVIVNTCGFLDSAKAESLDAIGEA- 89

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
                      +  V+V GC+  AE E I    P V  V GP  Y ++ +++  A     
Sbjct: 90  --------LNENGRVIVTGCLG-AEPEFITGAHPKVLAVTGPHQYEQVLDVVHGA----- 135

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
                    D F  L    G     R   ++L I EGC+  C FC++P  RG   SR   
Sbjct: 136 ----VPPAPDPFIDLLPASGVTLTPRHY-SYLKIAEGCNHKCRFCIIPDMRGRLASRPAH 190

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE---------KCTFSDLLYSLSEIKG 259
            V+ EA KL++ GV E+ ++ Q+ +A  G     +         +   +DL   L  +  
Sbjct: 191 AVLREAEKLVEAGVRELLVISQDTSA-YGVDRRHDLSPWKGGEVRSHITDLARELGGLGA 249

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
            VRL Y   +P      LI    +   ++PYL +P Q      L+ M R   A      I
Sbjct: 250 WVRLHYIYPYPHV--RELIPLMAE-GRVLPYLDIPFQHAHPDTLRRMARPAAAERTLDRI 306

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
              RS+ P I + S FIVG+PGET+++F   ++ +D+    +   FKY    G   +++ 
Sbjct: 307 AEWRSICPGITLRSTFIVGYPGETEEEFSTLLEWMDEAQLDRVGCFKYENVAGARSNDLP 366

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK---GKLVGRSPWLQ 436
           + V + VK ER     +K +    +   A VG + +V++++  ++     + +  +P + 
Sbjct: 367 DHVPDTVKQERWERFMEKAQAISAAKLAAKVGTVQQVIVDEIDEDGIATCRTMADAPEID 426

Query: 437 SVVL---NSKNHNIGDIIKVRITDVKISTLYG 465
             +    +++    GDI++V + +     L+G
Sbjct: 427 GNLFLDEDTEGLAPGDILEVEVDEASEYDLWG 458


>gi|67459038|ref|YP_246662.1| MiaB-like tRNA modifying enzyme [Rickettsia felis URRWXCal2]
 gi|67004571|gb|AAY61497.1| MiaB-like tRNA modifying enzyme [Rickettsia felis URRWXCal2]
          Length = 421

 Score =  342 bits (877), Expect = 9e-92,   Method: Composition-based stats.
 Identities = 120/440 (27%), Positives = 209/440 (47%), Gaps = 32/440 (7%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V ++GC++N+Y+S  +       G +        ++ + NTC + + A ++    + + +
Sbjct: 14  VVTFGCRLNIYESEIIRKNLELSGID--------NVAIFNTCAVTKAAEKQARQAIRKAK 65

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
                  K   DL ++V GC AQ    ++    P V+ V+G +          +    K 
Sbjct: 66  -------KNNPDLKIIVTGCSAQTSP-QMYGNMPEVDKVIGNEEKLLPSYY--QITDEKI 115

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
            V+   SV++    L     G +R     AF+ +Q GCD FCTFC++PY RG   S  + 
Sbjct: 116 AVNDIMSVKETAGHLVSSFDGKSR-----AFIQVQNGCDHFCTFCIIPYGRGKSRSVPIG 170

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
            +V + + L+ NG  E+   G +V A  G  L G       +   L+ +  L RLR ++ 
Sbjct: 171 AIVSQVKHLVLNGFKEVVFTGVDVTA-YGSDLPGSPTFAQMIKRVLNLVPELKRLRLSSI 229

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
              ++ D L +     + +MP+ H+ +Q+G D ILK M RRH      +   ++R++RP+
Sbjct: 230 DVAEIDDELFELIAYSERIMPHFHISLQAGDDMILKRMKRRHNRANVIEFCRKLRAIRPE 289

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           ++  +D I GFP ET + F  T  L+ +        F YS R GTP + M  QV + ++ 
Sbjct: 290 VSFGADIIAGFPTETPEMFENTRKLISEAELQYLHVFPYSEREGTPAARMP-QVPKAIRK 348

Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIG 448
           ER   L+++ + Q   F    +GQ +E+L+E +       +  +     V L+ K   IG
Sbjct: 349 ERAEILRQEGQNQLSEFFKKHIGQKVELLVENNN------IAHTENFIPVKLD-KPLEIG 401

Query: 449 DIIKVRITDVKISTLYGELV 468
            I K ++  ++ + +  ELV
Sbjct: 402 QIFKAKLVGIEGNNMKCELV 421


>gi|325279490|ref|YP_004252032.1| Ribosomal protein S12 methylthiotransferase rimO [Odoribacter
           splanchnicus DSM 20712]
 gi|324311299|gb|ADY31852.1| Ribosomal protein S12 methylthiotransferase rimO [Odoribacter
           splanchnicus DSM 20712]
          Length = 456

 Score =  342 bits (877), Expect = 9e-92,   Method: Composition-based stats.
 Identities = 107/452 (23%), Positives = 204/452 (45%), Gaps = 34/452 (7%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEKVYS 82
           ++  + S GC  N+ D+  +       GY+    ++  DA+++++NTC     A E+  +
Sbjct: 26  KKVNIISLGCSKNLVDTEMLLKQLDQAGYDTETDVENSDAEVVIVNTCGFIGDAKEESVN 85

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +      K    KEG    V V GC++Q  G E+    P V+   G   +  + E +  
Sbjct: 86  TILEQVERK----KEGIVEQVYVIGCLSQRYGAELQEEIPEVDAFFGKFDWKGVLERMGE 141

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
               +                 I +          A+L I EGC++ C++C +P   G  
Sbjct: 142 HFDER-----------------IRNQRVLTTPDHYAYLKISEGCNRTCSYCAIPIMTGKH 184

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR   ++++E R L+  GV EI ++ Q++  + G  L G K   ++L+  +++I+GL  
Sbjct: 185 KSRDFEELLEECRALVKGGVKEILVVAQDLT-YYGIDLYG-KNRLAELIGRIADIEGLEW 242

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           ++   ++P      L+    +   +  YL + +Q  SD +L+ M R  +  +  ++I +I
Sbjct: 243 IKLHYAYPAGFPLELLTVMRERPNVCKYLDIALQHCSDHMLQQMRRGISKKQTIELIRKI 302

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT-PGSNMLEQ 381
           R   P I I +  + G PGET +DF    + V ++ + +   F YS    T    +  + 
Sbjct: 303 RQEVPGIFIRTTLMTGHPGETAEDFEELCEFVREMRFERLGVFPYSHEDDTWCDRHYQDD 362

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQS 437
           V E +K ER   + +           + +GQ+++VLI++   E+   VGR+    P +  
Sbjct: 363 VPEEIKRERAGRIMQIQAGIAEEIGRSQIGQVVKVLIDRQ--EEEYYVGRTEHDSPEVDP 420

Query: 438 -VVLNSKN-HNIGDIIKVRITDVKISTLYGEL 467
            V++  +    +G+  ++ IT      L+ E+
Sbjct: 421 EVLIPGERTLQVGEFYRMVITGADEYDLFAEI 452


>gi|91203193|emb|CAJ72832.1| conserved hypothetical protein [Candidatus Kuenenia
           stuttgartiensis]
          Length = 447

 Score =  342 bits (877), Expect = 9e-92,   Method: Composition-based stats.
 Identities = 132/449 (29%), Positives = 233/449 (51%), Gaps = 16/449 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +     ++GC++N Y++  + +   ++G+  ++    AD+ V+NTC +   + EK  +++
Sbjct: 7   KTCAFITFGCKVNQYETQALRESLIAKGFMEISPEMAADVYVINTCTVTSASDEKSRNYI 66

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R++       K+     +VV GC A+++   I ++   V+ V+       L E++    
Sbjct: 67  KRLK-------KKSPKSSIVVTGCYAESDAAAI-KKIDGVSHVITKADESSLAEIIVGND 118

Query: 145 FGKRVVDTDYSV----EDKFERLSIVDGGYNRKRGVT-AFLTIQEGCDKFCTFCVVPYTR 199
                  T         + F++ SI     +R  G T AFL I++GCD +C++C++PY R
Sbjct: 119 DPCIPQITSLPPYLLQNNTFQKDSIYRLNISRFHGHTRAFLKIEDGCDMYCSYCIIPYVR 178

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G   SR    + DEA++LI NG  EI L G ++ A+  +  DG   +   +L  LSE  G
Sbjct: 179 GAIKSRKWQDIHDEAKRLIHNGYKEIVLTGIHLGAYGKEMSDG--ISLVKILERLSEFSG 236

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           L R+R ++    +++  L+    +   + P+LH+P+QSG D ILK MNR++TA  Y++I+
Sbjct: 237 LGRIRLSSIEVNEITPELMHLIAERKTICPHLHIPLQSGDDLILKRMNRKYTAAYYQEIL 296

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
           D IRS     AI++D +VGFPGET+  F+ T+D   K GY++   F +S R GTP ++M 
Sbjct: 297 DTIRSNIKLPAITTDVMVGFPGETERHFQNTVDFCTKAGYSRMHIFPFSIRKGTPAASMQ 356

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSPWLQSV 438
                    +R   L+        ++    +  I EVL+E +   +  KL G +     V
Sbjct: 357 NHCASPSITQRKDLLKAHADTLSYAYKKQFLNHIGEVLVEWERDAKTNKLCGYTERYIKV 416

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGEL 467
           + +  +     I+ V+I  ++ S ++G+L
Sbjct: 417 LFDGPDTLKNSIVPVQIERIERSDVFGKL 445


>gi|317154682|ref|YP_004122730.1| MiaB-like tRNA modifying enzyme YliG [Desulfovibrio aespoeensis
           Aspo-2]
 gi|316944933|gb|ADU63984.1| MiaB-like tRNA modifying enzyme YliG [Desulfovibrio aespoeensis
           Aspo-2]
          Length = 443

 Score =  341 bits (876), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 127/451 (28%), Positives = 202/451 (44%), Gaps = 30/451 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA-AEKVYSFL 84
           + F  S GC  N+ D+ R+            +++  ADL ++NTC   + A  E V + L
Sbjct: 10  KVFTVSLGCPKNLVDTERLLGALGPA-MLPADTVAQADLALINTCGFIQPAVEESVAAIL 68

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             +R+   +R   G   LV VAGC+    G+++    P V++ +     +  P ++ +A 
Sbjct: 69  DAVRDADETRESTGRRPLVAVAGCLVSRYGQDLREELPEVDLWLSTDQLHLWPVMIAQAI 128

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
              R +                           A+L I EGC   C FC +P  RG   S
Sbjct: 129 THARPI--------------PNAPRRLSTGPAYAYLKISEGCSHNCHFCTIPSIRGPHRS 174

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R +  ++DEAR  +   V EI ++GQ+  +  G  L G+  T   L+  L+++ GL  LR
Sbjct: 175 RPVEALLDEAR-TLAASVPEIIIVGQDSTS-YGSDLGGD-NTIKHLVSGLADLPGLAWLR 231

Query: 265 YTTSHPRDMSDCLIKAHGDL-DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
               +P  ++D L+     + D L+PY  +P+Q     +L SM R   A   R++IDR+R
Sbjct: 232 LMYLYPAGLTDDLLGFLKSIGDPLLPYFDIPLQHAHPDVLASMGRPF-ARNPRKVIDRVR 290

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           +   D A+ + FIVG+PGETD+ F   M  V++  +     F Y P  GTP + + + VD
Sbjct: 291 AHFSDAALRTTFIVGYPGETDEHFDHLMRFVEETRFHHLGVFPYWPEDGTPAAALPDPVD 350

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRS----PWLQSV 438
           +  K +R   L     +      ++ VGQ + VLIE    E  G   GR+    P +   
Sbjct: 351 DQTKLDRRDALMALQADISREIMESHVGQTLPVLIEAPSPEWPGLFTGRTWFQAPEVDGT 410

Query: 439 VLNSKNHN----IGDIIKVRITDVKISTLYG 465
              S   +     G I+ + I       L G
Sbjct: 411 TYVSTPPDTTLTPGTIVTIEIDKADTYDLSG 441


>gi|163734118|ref|ZP_02141559.1| RNA modification enzyme, MiaB-family, putative [Roseobacter
           litoralis Och 149]
 gi|161392654|gb|EDQ16982.1| RNA modification enzyme, MiaB-family, putative [Roseobacter
           litoralis Och 149]
          Length = 459

 Score =  341 bits (875), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 123/461 (26%), Positives = 205/461 (44%), Gaps = 35/461 (7%)

Query: 18  VDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA 77
            D+   P    + S GC   + DS R+     ++GY      D AD +++NTC   + A 
Sbjct: 21  PDRPGQP-TIGMVSLGCPKALVDSERILTRLRAEGYGISPDYDGADAVIVNTCGFLDSAK 79

Query: 78  EKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLP 137
            +  S +G              +  V+V GC+  AE E I    P V  V GPQ Y ++ 
Sbjct: 80  AESLSAIGEA---------LNENGRVIVTGCLG-AEPEYITGAHPKVLAVTGPQQYEQVL 129

Query: 138 ELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197
           + +  A              D F  L          R   ++L I EGC+  C FC++P 
Sbjct: 130 DAVHAA---------VPPSPDPFVDLLPASAVSLTPRHF-SYLKISEGCNHKCKFCIIPD 179

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-----GEKCTFSDLLY 252
            RG   SR    V+ EA KL+++GV E+ ++ Q+ +A  G  +      G +   +DL  
Sbjct: 180 MRGRLASRPAHAVMREAEKLVESGVKELLVISQDTSA-YGVDIKHAEERGHRAHITDLAR 238

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
            L  +   VRL Y   +P       + A G   +++PYL +P Q     +L+ M R   A
Sbjct: 239 DLGSLGAWVRLHYVYPYPHVRQLIPLMAQG---LVLPYLDIPFQHAHPDVLRRMARPAAA 295

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
            +    I   RS+ PD+ + S FIVG+PGET+++F+  +D +D+    +   F+Y    G
Sbjct: 296 AKTLDEIAAWRSICPDLTLRSTFIVGYPGETEEEFQTLLDWLDEAQLDRVGCFQYENVAG 355

Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG--KLVG 430
              + + + V E+VK +R      K ++   +   A V Q +EV++++   +    +   
Sbjct: 356 ARSNALPDHVPEDVKQDRWNRFMAKSQDISEAKLAAKVAQRLEVIVDEVDTDAATCRTKA 415

Query: 431 RSPWLQSVVLNSKNH---NIGDIIKVRITDVKISTLYGELV 468
            +P +   +     H     GDI+ V + +     L+G +V
Sbjct: 416 DAPEIDGNLFIDDGHDGLKPGDIVTVEVDEAGEYDLWGRIV 456


>gi|325959667|ref|YP_004291133.1| RNA modification enzyme, MiaB family [Methanobacterium sp. AL-21]
 gi|325331099|gb|ADZ10161.1| RNA modification enzyme, MiaB family [Methanobacterium sp. AL-21]
          Length = 425

 Score =  341 bits (875), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 135/445 (30%), Positives = 221/445 (49%), Gaps = 26/445 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + ++ + GC  N  DS  M  +      E V++ +DAD I++NTC+++    +KV + + 
Sbjct: 2   KVYIDTVGCTFNQADSQIMAGILKENRVELVDTPEDADTIIMNTCYVKHPTEQKVLTKIK 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           +++        +  +  ++++GC+ + + E++   +P  +  +GP       E++     
Sbjct: 62  KMQE-------QYPESKLLISGCMVEIDPEKLADAAPEAS-WIGPHKIKSTYEIVNSVHE 113

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G  V +T +S E K      V     R   +   + I EGCD FCT+C   + RG   S 
Sbjct: 114 GNIVRETGFSSEPK------VGLPKVRTNPIIHIIQICEGCDGFCTYCCTRFARGRIQSY 167

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           S   +  EA + +  G  EI L  Q+  A  G+       + +DL+  +S+I G  +LR 
Sbjct: 168 SSEMIKKEAEQAVTEGCKEIQLTAQDTAA-YGRDT---GESLADLISMISDIDGKFKLRV 223

Query: 266 TTSHPRDMSDC---LIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
              HP+ + +    +IKA         +LHLP+QSGSD +L  MNR HT  EY+ I+ R 
Sbjct: 224 GMMHPKSIMNQVDPIIKAFKK-GKCYKFLHLPIQSGSDTVLHDMNRCHTVDEYKTIVSRF 282

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R   PDI+IS+D IVG+P ETDDDF+AT++L+ ++        KY  R GT  S + E +
Sbjct: 283 REEIPDISISTDIIVGYPTETDDDFKATLNLIKELEPDFLHISKYMHRPGTTSSQLEE-I 341

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
           +     ER   L     E  +  N   +G    +L+   G++ G  VGRS   ++V++ +
Sbjct: 342 EHETMKERSKALNDLKMEIAMKKNSMMIGSKQTILVTNKGRKGG-YVGRSDGYKTVIIEA 400

Query: 443 KNHNIGDIIKVRITDVKISTLYGEL 467
               IG  + V I D K + L  EL
Sbjct: 401 AE--IGSFVDVVIKDAKPTYLLAEL 423


>gi|319898920|ref|YP_004159013.1| enzyme [Bartonella clarridgeiae 73]
 gi|319402884|emb|CBI76435.1| putative enzyme [Bartonella clarridgeiae 73]
          Length = 437

 Score =  341 bits (875), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 137/456 (30%), Positives = 212/456 (46%), Gaps = 36/456 (7%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R    S GC   + DS R+     S+GYE  N    ADL+++NTC   + A  +  + + 
Sbjct: 5   RISFVSLGCPKALVDSERIITRLRSEGYEISNKHQGADLVIVNTCGFLDSARNESLANID 64

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
               LKN+         V+V GC+  AE   IL+  P V  + GPQ Y  + + +  A  
Sbjct: 65  EA--LKNNGK-------VIVTGCLG-AEPNVILQAYPNVIAITGPQDYESVIQAVHTA-- 112

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                     V D F  L    G     R   A+L I EGC   C+FC++P  RG   S+
Sbjct: 113 -------VPPVHDPFIDLVPPQGIRLTPRHY-AYLKISEGCSNRCSFCIIPTLRGNLTSQ 164

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE--------KCTFSDLLYSLSEI 257
            +  V+ EA KL+  GV EI ++ Q+  A+       E        K  F DL   L E+
Sbjct: 165 PIGDVLREAEKLVQAGVKEILVISQDTGAYGIDIKYAESIWQNRVIKTKFLDLCRELGEM 224

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
              VR+ Y   +P       + A G    ++PYL +P Q  S  +L++M R     +  +
Sbjct: 225 GIWVRIHYVYPYPHIDQAVELMAAG---KILPYLDIPFQHASPTVLRNMKRPAHIEKTNR 281

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
            I++ R + PD+ + S FIVGFPGET++DF   ++ +++    +A  FKY    G   ++
Sbjct: 282 RIEKWREICPDLTLRSTFIVGFPGETNEDFNMLLEWLEEAKIERAGCFKYEAVKGAVAND 341

Query: 378 M-LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE--KGKLVGRSPW 434
           + LE + E VK  R      K ++         +G+ ++VLI++   +  KG+    SP 
Sbjct: 342 LGLENIPEEVKENRWHRFMIKQQKISADLLKKKIGKRLQVLIDETQGKIAKGRSKYDSPE 401

Query: 435 LQSVVLNS--KNHNIGDIIKVRITDVKISTLYGELV 468
           +  VV  S  K+  IG+ + V+I       LYG +V
Sbjct: 402 IDGVVHISSRKSLRIGEFVTVKIEQSDSYDLYGTVV 437


>gi|313203646|ref|YP_004042303.1| SSU ribosomal protein s12p methylthiotransferase [Paludibacter
           propionicigenes WB4]
 gi|312442962|gb|ADQ79318.1| SSU ribosomal protein S12P methylthiotransferase [Paludibacter
           propionicigenes WB4]
          Length = 434

 Score =  341 bits (875), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 106/449 (23%), Positives = 209/449 (46%), Gaps = 35/449 (7%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDAD--LIVLNTCHIREKAAEKVYSFL 84
             V + GC  N+ DS ++   F + GY+  +  +  D  ++++NTC     A E+  + +
Sbjct: 10  VDVVTLGCSKNLVDSEQLMRQFDALGYQVRHDAEKPDGEIVIVNTCGFIGDAKEESINTI 69

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            +  +L+    K+     + V GC+++    E+    P V+   G   Y  + + + +  
Sbjct: 70  LQFADLR----KQNKIGKLFVMGCLSERYLNELSLEIPEVDKFYGKFNYTDILKEIGQ-- 123

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
                   +Y  + + ER       Y       A++ I EGC++ C++C +P   G   S
Sbjct: 124 --------EYRADLRLERKLTTPNHY-------AYIKISEGCNRTCSYCAIPIITGRHRS 168

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R +  + +E + L+ +GV E  L+ Q++ ++ G+    +    ++L   LS+I+G+  LR
Sbjct: 169 RFIEDIENEVKGLVASGVKEFQLIAQDL-SYYGQDRY-KSLKLAELTERLSDIQGVEWLR 226

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
              ++P      ++K   + D +  YL + +Q  SD +L  M R  T+ +  ++ID+IR 
Sbjct: 227 LHYAYPTQFPYDILKVMRERDNVCNYLDIALQHVSDNMLGKMRRNITSAQTYELIDKIRQ 286

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN-MLEQVD 383
             PDI + +  ++G PGET++D     + V K+ + +  +F +S   GT       + + 
Sbjct: 287 EVPDIHLRTTLLLGHPGETEEDVEELKNFVQKVRFERLGAFAFSNEEGTYAYKTYEDNIP 346

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQS-V 438
           + VK  R+  +    +      N   +G+ ++V+I++   E    VGR+    P +   V
Sbjct: 347 DEVKQNRVNEIMSLQQTISAEINQTKIGKTLKVMIDRV--EDEYFVGRTEYDSPEVDPEV 404

Query: 439 VLNSKNHNI--GDIIKVRITDVKISTLYG 465
           ++ +    +  G+    RI D     LYG
Sbjct: 405 LIPTSTEGVRQGEFFNARIFDATDFDLYG 433


>gi|319762033|ref|YP_004125970.1| miab-like tRNA modifying enzyme ylig [Alicycliphilus denitrificans
           BC]
 gi|317116594|gb|ADU99082.1| MiaB-like tRNA modifying enzyme YliG [Alicycliphilus denitrificans
           BC]
          Length = 463

 Score =  341 bits (875), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 121/482 (25%), Positives = 204/482 (42%), Gaps = 46/482 (9%)

Query: 14  VSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIR 73
           +S+ +     P+  FV S GC  N+ DS  +     ++GYE   +   ADL+++NTC   
Sbjct: 1   MSEALSPTKTPKIGFV-SLGCPKNLTDSELILTQLSAEGYETSKTFQGADLVIVNTCGFI 59

Query: 74  EKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEE----ILRRSPIVNVVVG 129
           + A  +    +G              +  V+V GC+     +     +    P V  V G
Sbjct: 60  DDAVRESLDTIGEALA---------DNGKVIVTGCLGARADDGGGNLVKGVHPNVLAVTG 110

Query: 130 PQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKF 189
           P     + E + +          D       E       G        A+L I EGC+  
Sbjct: 111 PHAAQEVMEHVHQHLPKPHDPFLDLVPGTFGE------AGIKLTPRHYAYLKISEGCNHR 164

Query: 190 CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE 243
           CTFC++P  RG  +SR +  V++EAR L + GV E+ ++ Q+ +A+      R    DG+
Sbjct: 165 CTFCIIPSMRGDLVSRPIGDVLNEARALFEGGVKELLVVSQDTSAYGVDVKYRTGFWDGK 224

Query: 244 --KCTFSDLLYSLSEI----KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQS 297
             +    +L+ +L  I       VRL Y   +P       +       +++PYL +P Q 
Sbjct: 225 PVRTRLLELVQTLGAIARPYGAWVRLHYVYPYPSVDDIIPLM---QEGLVLPYLDVPFQH 281

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
               +LK M R  +  +  + I R R + P++ + S FI GFPGET+++F   +  + + 
Sbjct: 282 SHPDVLKRMKRPASGEKNLERIQRWREMCPELVVRSTFIAGFPGETEEEFEHLLQFLREA 341

Query: 358 GYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVL 417
              +A  F YS   G   +++   +   ++ ER         E   +     VGQ ++VL
Sbjct: 342 QIDRAGCFAYSNVRGAAANDLPGMLPMELREERRARFMAVAEEVSTARLQRRVGQTLQVL 401

Query: 418 IEK-----HGKEKGKLVGRSPWLQSVVL------NSKNHNIGDIIKVRITDVKISTLYGE 466
           ++K          G+    +P +  +V        SK + +GD +KVRI   +   L G 
Sbjct: 402 VDKAVGLGKKGGVGRSWADAPEIDGLVHLLPPEKISKTYKVGDFVKVRIVGTQGHDLVGV 461

Query: 467 LV 468
            V
Sbjct: 462 PV 463


>gi|85372941|ref|YP_457003.1| ribosomal protein S12 methylthiotransferase [Erythrobacter
           litoralis HTCC2594]
 gi|123409738|sp|Q2NDN5|RIMO_ERYLH RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|84786024|gb|ABC62206.1| hypothetical protein ELI_00570 [Erythrobacter litoralis HTCC2594]
          Length = 462

 Score =  341 bits (875), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 118/479 (24%), Positives = 206/479 (43%), Gaps = 51/479 (10%)

Query: 13  MVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHI 72
           + S I DQ    ++  + S GC   + DS R+     + GY        AD++++NTC  
Sbjct: 4   ITSAIPDQ----KKVGMVSLGCPKALVDSERILTRLRADGYAMSADYAGADVVLVNTCGF 59

Query: 73  REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT 132
            + A E+  + +G              +  V+V GC+ + E + I    P V  V G   
Sbjct: 60  LDSAKEESLAAIGEA---------IAENGRVIVTGCMGE-EADAIRAAHPQVLAVTGAHQ 109

Query: 133 YYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTF 192
           Y  +   +       +    D   +     + +    Y       ++L I EGC+  C F
Sbjct: 110 YEAVVGAVHEHAPPSQGPYVDLIPQPSEADIKLTPRHY-------SYLKISEGCNHSCAF 162

Query: 193 CVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE--------- 243
           C++P  RG   SR +  V+ EA KL+  G  E+ ++ Q+ +A  G     E         
Sbjct: 163 CIIPQLRGKLASRRIDAVLREAEKLVAAGTKELLVISQDTSA-YGVDTRHEAKSWKGREV 221

Query: 244 KCTFSDLLYSLSEI------KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQS 297
           +   +DL   L ++         VRL Y   +P   +   + A G   +L PYL +P Q 
Sbjct: 222 RAHMTDLARELGQLDTGDGTPPWVRLHYVYPYPHVDAVIPLMAEG---LLTPYLDIPFQH 278

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
            S ++LK+M R     +  + +   R++ P+IA+ S F+VGFPGET+DDFR  ++ +++ 
Sbjct: 279 ASPKVLKAMKRPANEAKVLERLKGWRAICPEIAVRSSFVVGFPGETEDDFRYLLEWLEEA 338

Query: 358 GYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVL 417
              +  +F++ P  G   + + + V E VK ER   + +             +G+ + V+
Sbjct: 339 RLDRVGAFRFEPVEGAAANALPDPVPEEVKEERYARIMELTARISAEKLQRKIGRALPVI 398

Query: 418 IEKHGKEK--------GKLVGRSPWLQSVVL---NSKNHNIGDIIKVRITDVKISTLYG 465
           I++ G+          G+    +P +   V           GDI++V + D     L+G
Sbjct: 399 IDEVGEPDEDGDIGATGRSQADAPEIDGAVYLRNVPATLAAGDIVQVTVEDADEHDLFG 457


>gi|46201319|ref|ZP_00055284.2| COG0621: 2-methylthioadenine synthetase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 418

 Score =  341 bits (874), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 132/439 (30%), Positives = 210/439 (47%), Gaps = 29/439 (6%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V ++GC++N Y+S  M++   +       +    + +++NTC +  +A  +    + +IR
Sbjct: 8   VLTFGCRLNAYESEVMKEHARA-------TESGVETVIVNTCAVTAEAERQARQAIRKIR 60

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
                  +E  +  +VV GC AQA  E      P ++ ++G       P +       + 
Sbjct: 61  -------RERPNARIVVTGCAAQAHPET-FDAMPEIDQILGN-AEKMQPGIFAEPPAQRI 111

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           VV     V +    L     G  R     AF+ +Q+GCD  CTFC++P+ RG   S  + 
Sbjct: 112 VVGDIMEVREVASHLVSGFEGRAR-----AFVEVQQGCDHRCTFCIIPFGRGPNRSVPMG 166

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
           ++V++ ++L+  G  E+ L G +V A  G  L G+      +   L+ +  L RLR ++ 
Sbjct: 167 RIVEQIKELVAGGFNEVVLTGVDVTA-YGADLPGKPGLGQLVRRLLAALPELPRLRLSSL 225

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
            P ++ + L+ A      L+P+ HL VQ+G D ILK M RRH   +   +  RIR++RPD
Sbjct: 226 DPVEVDEELLTAMASEPRLLPHFHLSVQAGDDTILKRMKRRHLRSDVIALAARIRALRPD 285

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
             + +D I GFP E +  F  +++LVD+ G      F +S R GTP + M  +V  +V  
Sbjct: 286 AVLGADIIAGFPTEDEAMFGRSLELVDEAGLTHLHVFPFSARPGTPAARMP-KVKGDVVK 344

Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIG 448
           ER   L+ K      +F    +G    VLIEK GK      G S     V +       G
Sbjct: 345 ERAARLRAKGAAAMEAFLATRIGSEESVLIEKDGK------GHSAHYLPVRVAGCTAEPG 398

Query: 449 DIIKVRITDVKISTLYGEL 467
            I+ VRIT V+   L GEL
Sbjct: 399 TILNVRITSVEGDELVGEL 417


>gi|163782285|ref|ZP_02177283.1| hypothetical protein HG1285_05845 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882318|gb|EDP75824.1| hypothetical protein HG1285_05845 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 422

 Score =  341 bits (874), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 117/450 (26%), Positives = 205/450 (45%), Gaps = 36/450 (8%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +  V S GC  N+ DS  +     S G E  + ++ AD IV+NTC   E A  +    + 
Sbjct: 2   KVGVISLGCSKNLVDSEILLARLKSAGVELTSDIESADCIVVNTCGFIEDAKRESIDTIL 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                            V+V GC+ +   +E+ +    V    G Q++  + + L     
Sbjct: 62  EA---------IDTGKKVLVMGCLVERYRKELEKELTEVEGFFGTQSWDEILKHLG---- 108

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                          +                A++ I EGC++ C+FC +P  RG  +SR
Sbjct: 109 --------------LQPKYSAPYRLLTTPTSYAYVKIAEGCNRLCSFCAIPKIRGRHLSR 154

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            +  +V E + L   GV EI ++ Q+   + GK L  E    ++LL  L E++G+  +R 
Sbjct: 155 PVEDIVSEVKDLASRGVKEIDIVSQDTT-YYGKDLYRE-YRLTELLKELEEVEGIEWIRL 212

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
              +P ++SD LI    D + ++PY  +P+Q  S ++LKSM R +     R++I++IRS 
Sbjct: 213 LYLYPTEVSDQLISYIRDSEKVLPYFDMPIQHISSKVLKSMRRGYDEGFVRRLIEKIRSE 272

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P+  + +  IVG+P E ++DFR  ++ V++  +     F YSP   T    + + + + 
Sbjct: 273 IPEAVLRTTLIVGYPNEDEEDFRRLLNFVEEGHFHWLGVFTYSPEEDTGAFPLGDPLPQE 332

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-----KGKLVGRSPWLQSVVL 440
           +K ER   L +  R+     N + VG+  +V+++    E     KG+    +P +   V 
Sbjct: 333 LKEERKETLIEAQRKITARKNASLVGKRFKVIVDGFSSEFSFVPKGRAYLHAPEVDGAVY 392

Query: 441 --NSKNHNIGDIIKVRITDVKISTLYGELV 468
             + +   +GD ++V IT      L G +V
Sbjct: 393 IESEEPLKVGDRVEVEITQATDYDLGGRVV 422


>gi|294785210|ref|ZP_06750498.1| Fe-S oxidoreductase [Fusobacterium sp. 3_1_27]
 gi|294486924|gb|EFG34286.1| Fe-S oxidoreductase [Fusobacterium sp. 3_1_27]
          Length = 435

 Score =  341 bits (874), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 123/445 (27%), Positives = 224/445 (50%), Gaps = 20/445 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++    + GC++N Y++  +++    +GYE V   D +D+ ++N+C +   A  K  + L
Sbjct: 5   KKVAFHTLGCKVNQYETESIKNQLIKRGYEEVPFEDKSDIYIINSCTVTSIADRKTRNML 64

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R +       K   D  V+V GC AQ    EIL     V+ V+  +    +   +    
Sbjct: 65  RRAK-------KINPDAKVIVTGCYAQTNSREIL-EIEDVDFVIDNKNKSNIVNFVGAIE 116

Query: 145 --FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
               +R  + +   E +++           +    A++ IQ+GC+ FC++C +P+ RG  
Sbjct: 117 DISFEREKNGNIFQEKEYQEYEFATL----REMTRAYVKIQDGCNHFCSYCKIPFARGKS 172

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR    ++ E  KL+++G  E+ L+G +++A  GK    EK  F  LL  + +IK L R
Sbjct: 173 RSRKKENILKEIEKLVEDGFKEVILIGIDLSA-YGKDFK-EKDNFESLLEDILKIKDLKR 230

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R  + +P  ++D  I+   +   LMP+LH+ +QS  D +LK+M R + +   R+ + ++
Sbjct: 231 VRIGSVYPDKITDRFIELFKN-KNLMPHLHISLQSCDDTVLKNMRRNYGSSLIRESLLKL 289

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           +S   ++  ++D IVGFP E +  F+ T D++ +I ++    F+YS R GT  SNM  +V
Sbjct: 290 KSKVKNMEFTADVIVGFPKEDETMFQNTYDVIKEIEFSGLHIFQYSDREGTIASNMDGKV 349

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
           D   K +R   L    +E  ++     + + +EVL+E+  ++ G+  G S     V   S
Sbjct: 350 DAKTKKQRADRLDNLKQEMILNSRKKYLEKSLEVLVEE--EKDGEYFGYSQNYLRVKFKS 407

Query: 443 -KNHNIGDIIKVRITDVKISTLYGE 466
            + + +  +I V+I  VK   L  E
Sbjct: 408 NEKNLVNKLINVKIKCVKNDILIAE 432


>gi|260752719|ref|YP_003225612.1| ribosomal protein S12 methylthiotransferase [Zymomonas mobilis
           subsp. mobilis NCIMB 11163]
 gi|258552082|gb|ACV75028.1| MiaB-like tRNA modifying enzyme YliG [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
          Length = 443

 Score =  341 bits (874), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 121/462 (26%), Positives = 206/462 (44%), Gaps = 36/462 (7%)

Query: 17  IVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA 76
           ++ +     +  + S GC   + DS R+     S+GY   +  D+AD++++NTC   + A
Sbjct: 1   MIKKLPTSPKIGMVSLGCPKALVDSERILTKLRSEGYNLSSQYDEADVVLVNTCGFIDSA 60

Query: 77  AEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL 136
            E+    +G              +  V+V GC+   E + I  R P +  + G Q Y  +
Sbjct: 61  KEESLDAIGEA---------MAENGRVIVTGCLGN-EADRIRERFPDILAITGAQQYEEV 110

Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
              +  A   +     D           + + G        ++L I EGC+  C+FC++P
Sbjct: 111 VSAVHDAAPIEASPYVDL----------VPEQGLKLTPRHYSYLKISEGCNHRCSFCIIP 160

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW--------RGKGLDGEKCTFS 248
             RG  +SR    ++ EA KL+  G  E+ ++GQ+ +A+                K   +
Sbjct: 161 SLRGDLVSRRADAILREAEKLVAAGTKELLVIGQDSSAYGVDLRHQEYRWKDRMVKADLT 220

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
           DL   L E+   VRL Y   +P   +   + A G   +++PYL +P Q  S  +LK M R
Sbjct: 221 DLARGLGELGAWVRLHYVYPYPHVDNLIPLMAEG---LILPYLDIPFQHASPSVLKRMKR 277

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
                +    + + R + PDIA+ S F+VGF GET+ DF+  +D +D+    +  +F++ 
Sbjct: 278 PANEVKILDRLTKWREIVPDIALRSSFVVGFLGETEQDFQYLLDWLDEAQLDRVGAFRFE 337

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI---EKHGKEK 425
              G   +     V E VK ER   L +K  +   +   A +G+ I  +I   +  G   
Sbjct: 338 AVEGAAANAFDGAVPEEVKNERYQRLMEKAAQISEAKLQAKIGRDIATIIDRTDGEGGAS 397

Query: 426 GKLVGRSPWLQSVVL--NSKNHNIGDIIKVRITDVKISTLYG 465
           G+    +P +   V   ++ N  IGDI+ VR+ D     L+G
Sbjct: 398 GRSYADAPEIDGEVHLRDADNLKIGDIVTVRVEDADEHDLFG 439


>gi|316968295|gb|EFV52591.1| putative radical SAM domain protein [Trichinella spiralis]
          Length = 542

 Score =  341 bits (874), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 129/449 (28%), Positives = 223/449 (49%), Gaps = 25/449 (5%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
            +VK++GC  N  DS  M  +  S GY  V+    AD+ +LN+C ++  + + V + L +
Sbjct: 54  VYVKTWGCTHNSSDSEYMAGLMSSAGYGIVDDPSVADIWLLNSCTVKTPSEQHVQNELEK 113

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
            R L            V+V+GCV QAE    +     V++V G Q   R+ E++E    G
Sbjct: 114 ARALNKP---------VIVSGCVPQAEPS--IPWLQGVSLV-GIQQIDRIVEVVEETLKG 161

Query: 147 KRVVDTDYS-VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
             V   +Y  V+ K    + +D    R+  +   + I  GC   CT+C     RG   S 
Sbjct: 162 NTVQLLNYKKVKGKRTAGARLDLPKVRRNPLVEIIAINTGCLNNCTYCKTKKARGNLASY 221

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKGLVRLR 264
           S+ +++D A   I  GV EI L  +++ A  G+ +D   CT  +LL +L +++   V LR
Sbjct: 222 SIEEIIDRAESCISEGVKEIWLTSEDLGA-YGRDID---CTLPELLKALTAKLPDGVMLR 277

Query: 265 YTTSHP---RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
              ++P     +S   I    +   +  +LH+PVQSGSD +L+ M R +   ++  +++ 
Sbjct: 278 LGMTNPPFHIPISVQEIGEILNHPCVYSFLHIPVQSGSDAVLRDMRREYNVDDFCAVVEF 337

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R   P I I++D I GFP ET+ DF+ T+DLV+K  +A  F  ++ PR GTP + + ++
Sbjct: 338 MRKKVPGITIATDVICGFPTETEQDFKDTLDLVEKYRFASLFINQFYPRPGTPAAKL-KR 396

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVL 440
           +D  V  +R   + +             VG   +VLI +   +    LVG + + + +++
Sbjct: 397 LDTAVVKDRTRRMTQLFN--SYEPYRNRVGLKYQVLITERSFRGDDYLVGHNKFYEQILV 454

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELVV 469
            ++ + +G  + V+I      ++ GEL  
Sbjct: 455 ANQPNLLGKKVWVKIVSCSKHSMVGELTA 483


>gi|218132828|ref|ZP_03461632.1| hypothetical protein BACPEC_00689 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991701|gb|EEC57705.1| hypothetical protein BACPEC_00689 [Bacteroides pectinophilus ATCC
           43243]
          Length = 460

 Score =  341 bits (874), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 130/457 (28%), Positives = 225/457 (49%), Gaps = 37/457 (8%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVN--SMDDADLIVLNTCHIREKAAEKVYSF 83
           +  + + GC++N Y++  ME M  + GYE V     + AD+ V+NTC +   A  K    
Sbjct: 2   KAALHNLGCKVNSYETEAMEQMLIAAGYEIVPFCEDEKADVYVINTCSVTNIADRKSRQM 61

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           L + +       K+  + +VV AGC  QA G+E+     +V++V+G     RL E++   
Sbjct: 62  LHKAK-------KQNPNAIVVAAGCYVQARGDELAA-DDMVDIVIGNNRKNRLVEIINDY 113

Query: 144 --RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
                      D +   ++E L+I D   + +    A++ +Q+GC++FC++C++PYTRG 
Sbjct: 114 IGNNSNNEAVVDIAKTHEYEELNIYDVCEHTR----AYIKVQDGCNQFCSYCIIPYTRGR 169

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG------------LDGEKCTFSD 249
             SR    V  E R+L++ G  E  L G +++++                 +       +
Sbjct: 170 VRSRRPEDVTAEVRRLVEKGYKEFILAGIHLSSYGIDFEAPCDEAVDYRAANMPGSRLLE 229

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
           L+ ++  ++G+ RLR  +  PR +++  +K   +L+ + P+ H+ +QSG D  LK MNRR
Sbjct: 230 LIEAVCSVEGVKRLRLGSFEPRILTEAFVKRMAELEPVCPHFHISLQSGCDATLKRMNRR 289

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369
           +TA EY +    +R   P+ AI++D IVGFP ETD++F  T + +++I + +   FKYS 
Sbjct: 290 YTADEYEESCKLLRKYFPNAAITTDVIVGFPQETDEEFAITKEYLERIHFYEMHVFKYSR 349

Query: 370 RLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE----- 424
           R GT    M  QV E VK  R   L +  +     + ++ +G I EVL E+         
Sbjct: 350 RKGTAADRMDGQVPEPVKTARSAGLLELEKRMSREYRESALGSIQEVLFEEVAGTCDDCG 409

Query: 425 KGKLVGRSPWLQSVVLNSKNHN----IGDIIKVRITD 457
              + G +    +V +          I  I  V++  
Sbjct: 410 TSVITGHTKTYINVHVKLPADMSLEYINKICNVKLEH 446


>gi|118594973|ref|ZP_01552320.1| hypothetical protein MB2181_04855 [Methylophilales bacterium
           HTCC2181]
 gi|118440751|gb|EAV47378.1| hypothetical protein MB2181_04855 [Methylophilales bacterium
           HTCC2181]
          Length = 442

 Score =  341 bits (874), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 116/455 (25%), Positives = 206/455 (45%), Gaps = 36/455 (7%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
            P+  F+ S GC     D+ +M     ++GYE  N+  +++L+++NTC   + A E+   
Sbjct: 9   APKIGFI-SLGCPKAGSDTEKMLSQIKAEGYEIANNYKESELVIVNTCGFIDSAVEESLD 67

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +    +             V+V GC+ +   + I +R   +  + G + Y  + E +  
Sbjct: 68  AISEALDENGK---------VIVTGCLGER-KDVIEKRFNNLLAITGSEAYQEVMEAVHL 117

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
                     D           I   G        A++ I EGC+  CTFC++P  RG  
Sbjct: 118 HAPKPTNPHIDL----------IPPQGIRLTPKHYAYIKISEGCNHKCTFCIIPSMRGKL 167

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYSL 254
           ISR +  ++ EA  L+++GV E+ ++ Q+ +A+      R    +G   K    +L  SL
Sbjct: 168 ISRPIGDIMQEAENLVNSGVSELIIISQDTSAYGVDVKYRPGFWNGRPIKTDLYNLAKSL 227

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
           SE+   VR  Y   +P      LI+      +++PY+ +P Q  +  ILKSM R   A  
Sbjct: 228 SELGVWVRFHYVYPYPNVD--RLIELMA-SGLILPYIDVPFQHANPTILKSMKRPANAEN 284

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
             + I+  R++ P++ I S FIVGFPGET++ F   ++ ++     +   F YS   G  
Sbjct: 285 NLERINGWRAICPNLTIRSTFIVGFPGETEEQFEDLLEFLELAQLDRVGCFTYSDVDGAT 344

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE--KGKLVGRS 432
            + + +Q+ E+VK +R +                 VG +  VLI++ G++  K +    +
Sbjct: 345 ANLLDKQIPEDVKQDRYIRFMTVQNAISKKKLLNKVGTVHTVLIDEVGEDYAKARSYANA 404

Query: 433 PWLQSVVL--NSKNHNIGDIIKVRITDVKISTLYG 465
           P +   +   N +   +GD++ V+I   +   LY 
Sbjct: 405 PEIDGNIFLENPEGLEVGDMLDVKIKRSEEYDLYA 439


>gi|323699272|ref|ZP_08111184.1| MiaB-like tRNA modifying enzyme YliG [Desulfovibrio sp. ND132]
 gi|323459204|gb|EGB15069.1| MiaB-like tRNA modifying enzyme YliG [Desulfovibrio desulfuricans
           ND132]
          Length = 442

 Score =  341 bits (874), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 128/460 (27%), Positives = 195/460 (42%), Gaps = 37/460 (8%)

Query: 23  VPQ------RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA 76
           +P+      R +  S GC  N  D+ R+            +    ADL+++NTC   + A
Sbjct: 1   MPKTPATAVRTYTVSLGCPKNRVDTERLLGALGPH-MVPADDAAGADLVLINTCGFIQPA 59

Query: 77  -AEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135
             E V + L  I     +  + G   L+ VAGC+    GE++    P V++ +  +   +
Sbjct: 60  VEESVATILDVIGEAAETFDRTGRRPLICVAGCLVSRYGEDLRSELPEVDLWLNTEEIEQ 119

Query: 136 LPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
            P +  RA   +   DT  S+                     A+L + EGC   C FC +
Sbjct: 120 WPAMAARALALRLTGDTPRSL---------------STGPSYAYLKVSEGCSHNCRFCTI 164

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
           P  RG   S  +  +++EAR L    V EI ++GQ+  A  G  L G       LL  L+
Sbjct: 165 PSIRGPHRSWPVDFLLNEARLLAGQ-VPEIIVVGQDSTA-YGSDL-GPGNDLPTLLRGLA 221

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV-LMPYLHLPVQSGSDRILKSMNRRHTAYE 314
            I  L  LR    +P  +++ L+    D     +PY  +P+Q     +L SM R   A  
Sbjct: 222 AIPDLHWLRIMYLYPAGLTESLLGLLRDTGAPFLPYFDIPLQHAHPDVLASMGRPF-ARN 280

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
             ++++R+R   P+ A+ + FIVG+PGET+  FR  MD V +  +     F Y    GTP
Sbjct: 281 PEKVVERVRRFFPEAALRTTFIVGYPGETEAHFRTLMDFVRETRFHHLGVFPYWAEEGTP 340

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGR-- 431
            + M  QV + VK +R   L     E      +  VG  + V+IE+   E  G  VGR  
Sbjct: 341 AAAMDGQVPDEVKLDRRDRLMALQAEISAEILEGYVGATLPVVIERESDEWPGLYVGRAW 400

Query: 432 --SPWLQSVVLNSKN----HNIGDIIKVRITDVKISTLYG 465
             +P +  V             GDI+ V I       L G
Sbjct: 401 FQAPEVDGVTYVGAPPETALRPGDILDVEIEKADTYDLSG 440


>gi|282600941|ref|ZP_05980225.2| 2-methylthioadenine synthetase [Subdoligranulum variabile DSM
           15176]
 gi|282570102|gb|EFB75637.1| 2-methylthioadenine synthetase [Subdoligranulum variabile DSM
           15176]
          Length = 465

 Score =  340 bits (873), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 115/461 (24%), Positives = 218/461 (47%), Gaps = 20/461 (4%)

Query: 3   LFIKLIGVAHMVSQIVD----QCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNS 58
           L ++  GV+ ++  +++    +  +  R    + GC++N  ++  +  +F   GY  V++
Sbjct: 7   LVLRFYGVSIIIRALLNTFDCKGTITMRVTFYTLGCKVNQNETGALAQLFEESGYTVVSN 66

Query: 59  MDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEIL 118
            + AD+ V+N+C +     +K   +L R +       +E    + V+ GC  QA  EE  
Sbjct: 67  EEAADVYVVNSCTVTNFGDQKSRKWLRRAK-------RENPGAVTVLTGCYPQAFPEE-A 118

Query: 119 RRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTA 178
                 +VV G      +   ++    G++    D    +K ER   +           A
Sbjct: 119 SEIAEADVVTGSGNRRSILHDVQMVLNGEQERVIDIRPHEKGERFEELPMD-KFAEHTRA 177

Query: 179 FLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK 238
           F+ +++GC++ C +CV+P  RG   SR  S ++ E  +L + G  EI L   ++ +  G 
Sbjct: 178 FVKVEDGCNRRCAYCVIPRARGPVRSREESSILQELHRLTEAGYKEIVLTAISLPS-YGT 236

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
                  +  +L+   + + G+ RLR  +  P  + D +I     +  L P  HL +QSG
Sbjct: 237 DS---GTSLVELVEKAAAVPGVERLRLGSLDPDMLHDEVILRLSRVKKLCPQFHLSLQSG 293

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVR--PDIAISSDFIVGFPGETDDDFRATMDLVDK 356
            D+ L++M R +T  ++ +I D++R      +++ ++D IVGFPGET++DF A+M  V  
Sbjct: 294 CDKTLRAMRRPYTTAQFAKIADKLRHAFGAENVSFTTDVIVGFPGETEEDFEASMAFVTG 353

Query: 357 IGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEV 416
             + +   F YS R GTP  +  +Q+ E+ K +R   +   +   +        G+  EV
Sbjct: 354 QHFLKVHVFPYSRREGTPAYDFPDQIPEHEKEDRSRRMTAAVEAVRAEEAVKMQGRTAEV 413

Query: 417 LIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITD 457
           L+E          G +     V++ + +H+ GDI++V + +
Sbjct: 414 LLETPL-SATLFTGYTKQYLPVLVTAPDHHTGDIVQVTLGE 453


>gi|103486211|ref|YP_615772.1| hypothetical protein Sala_0718 [Sphingopyxis alaskensis RB2256]
 gi|123078538|sp|Q1GV83|RIMO_SPHAL RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|98976288|gb|ABF52439.1| conserved hypothetical protein [Sphingopyxis alaskensis RB2256]
          Length = 455

 Score =  340 bits (873), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 123/478 (25%), Positives = 210/478 (43%), Gaps = 52/478 (10%)

Query: 18  VDQCIVP--QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREK 75
           +   I+P   +  + S GC   + DS R+     + GY        AD++++NTC   + 
Sbjct: 1   MTTKILPSQPKVGMVSLGCPKALVDSERILTKLRADGYGLSPDYAGADVVLVNTCGFLDS 60

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135
           A E+    +G              +  V+V GC+   E + I  R P V  V G   Y +
Sbjct: 61  AKEESLEAIGEA---------MAENGRVIVTGCMG-KEADVIRARFPNVLAVTGAHQYEQ 110

Query: 136 LPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
           + E +  A    +    D           + +GG        ++L I EGC+  C FC++
Sbjct: 111 VVEAVHDAAPPTQGPFVDL----------VPEGGLKLTPRHYSYLKISEGCNHSCAFCII 160

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE---------KCT 246
           P  RG  +SR +  V+ EA KL+  G  E+ ++ Q+ +A  G  +  +         +  
Sbjct: 161 PDLRGKLVSRRIDAVLREAEKLVAAGTKELLVISQDTSA-YGVDIRHDPRQWHGREIRAH 219

Query: 247 FSDLLYSLSEIK------GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300
            +DL   L +++        VRL Y   +P   +   + A G   +L PYL +P Q  S 
Sbjct: 220 MTDLARELGQLRTSEGRAPWVRLHYVYPYPHVDAVIPLMAEG---LLTPYLDIPFQHASP 276

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
            +LK M R     +  + +   R++ PDIAI S F+VGFPGET+ DF+  +D +++    
Sbjct: 277 SVLKRMKRPANEAKVLERLKSWRAIAPDIAIRSSFVVGFPGETEADFQYLLDWLEEAQLD 336

Query: 361 QAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
           +  +F++ P  G   + + E V + VK ER   +  K      +  +A +G+ + V+I++
Sbjct: 337 RVGAFRFEPVAGAQANALPEPVPDEVKEERYQRIMAKTAAISAAKLEAKIGRTLPVIIDE 396

Query: 421 HGKEK--------GKLVGRSPWLQSVVL---NSKNHNIGDIIKVRITDVKISTLYGEL 467
            G+          G+    +P +   V     +     GDI+ V I D     L+G +
Sbjct: 397 VGEADEDGSIGATGRSQADAPEIDGHVYLRDVAATLKAGDIVDVEIEDADEHDLFGVV 454


>gi|226357149|ref|YP_002786889.1| ribosomal protein S12 methylthiotransferase [Deinococcus deserti
           VCD115]
 gi|226319139|gb|ACO47135.1| putative 2-methylthioadenine synthetase [Deinococcus deserti
           VCD115]
          Length = 503

 Score =  340 bits (873), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 127/498 (25%), Positives = 216/498 (43%), Gaps = 53/498 (10%)

Query: 10  VAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNT 69
              M           ++    S GC   + DS R+      +GYE   S +DA  +++NT
Sbjct: 2   TEMMERPAESGTAGVKKVGFISLGCPKALVDSERILTQLRFEGYEVAPSYEDAHAVIVNT 61

Query: 70  CHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG 129
           C     A E+  + +G   +             V+V GC+ +   E+IL R P V  + G
Sbjct: 62  CGFITPAVEESLTAIGEALDA---------TSKVIVTGCLGER-PEKILERHPKVAAITG 111

Query: 130 PQTYYRLPELLER-------ARFGKRVVDTDYSVEDKFERLSIVDGGYNR---------- 172
            +    +   +         A  G   V       D  + +S+ D               
Sbjct: 112 SEAVDDVMMHVRELLPIETDAFTGLLPVAAPGMRADAEQPVSLTDPNARHGDVLAPSVKL 171

Query: 173 KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNV 232
                A++ I EGC+  C FC++P  RG ++SR    V+ E+ +LI  G  E+ ++ Q+ 
Sbjct: 172 TPRHYAYVKIAEGCNHTCAFCIIPKLRGRQVSRDAGSVLYESFRLIAGGTKELMIISQDT 231

Query: 233 NAW------RGKGLDGE--KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL 284
           +A+      R     GE  +   +DL   L E+   VR+ Y   +P    + L++  G  
Sbjct: 232 SAYGVDIRYRESEFQGEQIRAHLTDLAVKLGEMGAWVRMHYVYPYPHV--EKLVELMGQ- 288

Query: 285 DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETD 344
             ++PYL +P+Q  S RILK M R   A      I R R + P++ I S FIVGFPGET+
Sbjct: 289 GKILPYLDVPLQHASPRILKLMRRPG-AGRQLDTIRRWRELCPELVIRSTFIVGFPGETE 347

Query: 345 DDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVS 404
           ++F+  +  +++    +  +F YS         +   V E +K ERL    +  +     
Sbjct: 348 EEFQELLTFLEEARLDRVGAFAYSDVEEADARALPGHVPEEIKQERLARFMEVAQRISTE 407

Query: 405 FNDACVGQIIEVLIEKHGKEKG-----KLVGRS----PWLQSVVL-----NSKNHNIGDI 450
                +G++++V+I++   ++G     +L+GR+    P +   V       +    IGDI
Sbjct: 408 KLAEKIGRVMDVIIDEFNDDEGDLPGTRLIGRTKGDAPGIDGQVYLYAGDFAGQVKIGDI 467

Query: 451 IKVRITDVKISTLYGELV 468
           ++ RI D     L+GE++
Sbjct: 468 VRARIEDSDEYDLFGEVL 485


>gi|253583199|ref|ZP_04860397.1| Fe-S oxidoreductase [Fusobacterium varium ATCC 27725]
 gi|251833771|gb|EES62334.1| Fe-S oxidoreductase [Fusobacterium varium ATCC 27725]
          Length = 432

 Score =  340 bits (872), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 121/441 (27%), Positives = 216/441 (48%), Gaps = 15/441 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +R    + GC++N Y++  +++    +GY      + A++ ++N+C +   A  K  + L
Sbjct: 5   KRVAFYTLGCKVNQYETESIKNQLLKKGYTETAFEEKAEIYIVNSCTVTSVADRKTRNML 64

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R +       K     +V+V GC AQ   +E+L     ++ V+G      +   +E   
Sbjct: 65  RRAK-------KINPRGIVIVTGCYAQTNSKELL-EMEEIDYVIGNSDKNAIVNFIEDIE 116

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
              R ++   +     +           +    A++ IQ+GC+ FC++C +P+ RG   S
Sbjct: 117 --NRTMEKVKNHNIFLDSEYTEYEFATLREMSRAYVKIQDGCNNFCSYCKIPFARGKSRS 174

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R    ++ E  KL++ G  EI L+G N+ A  G+ LD E   F  LL S+ EI  L R+R
Sbjct: 175 RKKENIIKEIEKLVEEGFKEIILIGINLGA-YGEDLD-EGENFESLLKSILEINKLQRVR 232

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
             + +P  +SD  I    D   LMP+LH+ +QS  D +LK M R++ +    + + +++ 
Sbjct: 233 IGSVYPDKISDEFIN-MFDNKKLMPHLHISLQSCDDEVLKRMRRKYGSSLIEERLLKLKK 291

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
              ++  ++D IVGFPGET++ F+ + +L++KIG++    F+YS R  T  S+  +++D 
Sbjct: 292 KVKNMEYTADVIVGFPGETEEMFQNSYNLIEKIGFSGIHIFQYSDRENTIASSFTDKIDA 351

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
            VK ER   L+    E         +G+ + VL+E+  K  G L G S     V +    
Sbjct: 352 KVKKERADRLEVLKSEMAKKERKKYIGKHLSVLLEE--KINGYLYGYSENYLRVKIKDNG 409

Query: 445 HNIGDIIKVRITDVKISTLYG 465
             +  II ++I  ++   L  
Sbjct: 410 IEVNSIIDIKINSLEKEMLIA 430


>gi|319404219|emb|CBI77812.1| putative enzyme [Bartonella rochalimae ATCC BAA-1498]
          Length = 437

 Score =  340 bits (872), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 137/461 (29%), Positives = 212/461 (45%), Gaps = 38/461 (8%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           +V  R    S GC   + DS R+     S+GYE  N    ADL+++NTC   + A ++  
Sbjct: 1   MVAPRISFVSLGCPKALVDSERIITRLRSEGYEISNKHKGADLVIVNTCGFIDSARKESL 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           + +               +  V+V GC+  AE   IL+  P V  + GPQ Y  +   + 
Sbjct: 61  ANIDEA---------IKNNGKVIVTGCLG-AEPNIILQAHPNVLAITGPQDYESVIRAVH 110

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
                         V D F  L  + G     R   A+L I EGC   C+FC++P  RG 
Sbjct: 111 TV---------IPPVHDPFLDLVPLQGIRLTPRHY-AYLKISEGCSNRCSFCIIPTLRGN 160

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE---------KCTFSDLLY 252
            ISR +S V+ EA KL+  GV E+ ++ Q+  A  G  L            K  F DL  
Sbjct: 161 LISRPISDVLREAEKLVLAGVKELLVISQDTGA-YGIDLKYAESVWQNRVIKTKFLDLCR 219

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
            L E+   VR+ Y   +P       + A G    ++PYL +P Q  S  +L++M R    
Sbjct: 220 ELGEMGIWVRMHYVYPYPHIDEAIELMAAG---KILPYLDIPFQHASPNVLRNMKRPAHV 276

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
            +  + I+R R + PD+ + S FIVGFPGET++DF   ++ +++    +A  FKY    G
Sbjct: 277 EKISRRIERWREICPDLTLRSTFIVGFPGETNEDFNMLLEWLEEAKIERAGCFKYESVKG 336

Query: 373 TPGSNM-LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE--KGKLV 429
              +N+ LE + E VK +R      K ++         +G+ ++VLI++   +  KG+  
Sbjct: 337 AVANNLGLENIAEEVKEKRWHRFMTKQQKISAHLLKKKIGKRLQVLIDETQGKIAKGRSK 396

Query: 430 GRSPWLQSVVLNS--KNHNIGDIIKVRITDVKISTLYGELV 468
             SP +  VV  S  K   IG+ +  +I       LYG ++
Sbjct: 397 YDSPEIDGVVHISSRKPLRIGEFVTAKIEQSDSYDLYGNVI 437


>gi|260575306|ref|ZP_05843306.1| MiaB-like tRNA modifying enzyme YliG [Rhodobacter sp. SW2]
 gi|259022566|gb|EEW25862.1| MiaB-like tRNA modifying enzyme YliG [Rhodobacter sp. SW2]
          Length = 454

 Score =  340 bits (872), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 116/451 (25%), Positives = 194/451 (43%), Gaps = 32/451 (7%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
              + S GC   + DS R+     ++GY        AD +++NTC   + A  +    +G
Sbjct: 27  TIGMVSLGCPKALVDSERILTRLRAEGYAISADYQGADAVIVNTCGFLDSAKAESLEAIG 86

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                         +  V+V GC+  A+   I    P V  V GPQ Y  + + +  A  
Sbjct: 87  EALA---------QNGRVIVTGCLG-ADAGYITGAHPKVLAVTGPQQYEAVLDAVHGA-- 134

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                       D F  L          R   ++L I EGC+  C FC++P  RG  +SR
Sbjct: 135 -------VPPRPDPFIDLLPASAVSLTPRHY-SYLKISEGCNHACKFCIIPDMRGRLVSR 186

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAW----RGKGLDGEKCTFSDLLYSLSEIKGLV 261
               +V EA +L+  GV E+ ++ Q+ +A+    +     G +   +DL   L  +   V
Sbjct: 187 PAHAIVREAERLVAAGVRELLVISQDTSAYGLDLKHATDKGHRAHITDLARDLGSLGAWV 246

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           RL Y   +P       + A G   +++PYL +P Q     +LK M R   A +    I  
Sbjct: 247 RLHYVYPYPHVRDLIPLMAEG---LVLPYLDIPFQHADPGVLKRMARPAAAAKTLDEIAA 303

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
            RS+ PDI + S FIVG+PGETD +F+  +D +D+    +   F++    G   + + + 
Sbjct: 304 WRSLCPDITLRSTFIVGYPGETDAEFQVLLDWMDEAQLDRVGCFQFENVKGARANALPDH 363

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG--KLVGRSPWLQSVV 439
           V   VK ER      K +    +   A VG+++ V+++    E    + +  +P +   +
Sbjct: 364 VAPEVKQERWERFMLKAQAISEAKLAAKVGRVLPVIVDAVDAEGATCRTMADAPEIDGNL 423

Query: 440 LNS---KNHNIGDIIKVRITDVKISTLYGEL 467
                 +    GDI++V + +     L+G L
Sbjct: 424 FIDEGFEGLTPGDIVEVTVEEAGDYDLWGRL 454


>gi|168187897|ref|ZP_02622532.1| conserved hypothetical protein [Clostridium botulinum C str.
           Eklund]
 gi|169294251|gb|EDS76384.1| conserved hypothetical protein [Clostridium botulinum C str.
           Eklund]
          Length = 444

 Score =  340 bits (872), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 121/449 (26%), Positives = 217/449 (48%), Gaps = 22/449 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +  + S GC  N  DS  +      +  + VN  + AD+I++NTC   E + ++    + 
Sbjct: 5   KIGLISLGCDKNRIDSELLLGKLSEKN-DIVNDPNKADIIIVNTCGFIESSKQESIDTIL 63

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +   K  + K      ++  GC+ Q   + +    P +++++G   Y  +   +E    
Sbjct: 64  EMAKYKEKKCKM-----IIATGCLTQRYSKNLQELIPEIDIMLGVNDYANIQNYIEDFFS 118

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGY-NRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
               +      E K+  +SI +G          A++ I EGCD  CT+C++P  RG   S
Sbjct: 119 ENNRI-----CECKYSDISINEGKRILTTAKHMAYIRISEGCDNLCTYCIIPKIRGKYRS 173

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           RSL  +++EA++L + GV E+ L+GQ+  A  G  L  E+   S LL  LS I+ +  +R
Sbjct: 174 RSLESIINEAKELANMGVKELILVGQDT-AIYGSDLY-EENKLSTLLKELSNIEDIEWIR 231

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
              ++P +++D LI+   + D +  YL +P+Q  S+ +LK MNR+ +       I ++R 
Sbjct: 232 VLYTYPEEITDELIEEIKNNDKVCKYLDIPIQHISNTVLKRMNRKSSKELITNNIKKMRE 291

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
               + + +  IVGFPGET+++F    + +  I +     FKYS    T  + M  Q++E
Sbjct: 292 EIKGLCLRTSIIVGFPGETEEEFNELEEFIKDIEFNNLGVFKYSQEEDTAAARMKGQINE 351

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVL 440
            +K +RL  +    ++     N   +G++ +VL+E    +    VGR+    P +   + 
Sbjct: 352 KIKDKRLETIMSIQQKVSSKINKNKLGKMYKVLVEGQNDK--YYVGRNYQMVPEIDGAIF 409

Query: 441 NSKN--HNIGDIIKVRITDVKISTLYGEL 467
              +   NIG+ + V+ITD     L G +
Sbjct: 410 FKCDKILNIGEFVYVKITDTLEYDLIGVV 438


>gi|326386508|ref|ZP_08208131.1| hypothetical protein Y88_2403 [Novosphingobium nitrogenifigens DSM
           19370]
 gi|326209169|gb|EGD59963.1| hypothetical protein Y88_2403 [Novosphingobium nitrogenifigens DSM
           19370]
          Length = 469

 Score =  340 bits (872), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 128/487 (26%), Positives = 212/487 (43%), Gaps = 48/487 (9%)

Query: 8   IGVAHMVSQIVDQCI-VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIV 66
           +G   M S+     I    +  + S GC   + DS R+     + GY+     D AD+++
Sbjct: 1   MGRTLMTSEQTPVSIPAAPKVGMVSLGCPKALVDSERILTRLRADGYQMSADYDGADVVL 60

Query: 67  LNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNV 126
           +NTC   + A E+  + +G              +  V+V GC+   E E I  R P V  
Sbjct: 61  VNTCGFLDSAKEESLAAIGEA---------IAENGRVIVTGCMGN-EAELIRARFPDVLA 110

Query: 127 VVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGC 186
           V G   Y  + + +  A         D   +     + +    Y       ++L I EGC
Sbjct: 111 VTGAHQYEDVVDAVHAAAPPGLGPYVDLIPQSAPGDVKLTPRHY-------SYLKISEGC 163

Query: 187 DKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE--- 243
           +  CTFC++P  RG   SR +  V+ EA KL+  G  E+ ++ Q+ +A  G  +  E   
Sbjct: 164 NHACTFCIIPQLRGKLASRRIDAVLREAEKLVAAGTRELLVISQDTSA-YGVDVGHEERL 222

Query: 244 ------KCTFSDLLYSLSEIK------GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL 291
                 +   +DL   L  ++        VRL Y   +P   +   + A G   +L PYL
Sbjct: 223 WKGHPVRTHMTDLARELGGLRTPDGQVPWVRLHYVYPYPHVEAVIPLMAEG---LLTPYL 279

Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351
            +P Q  S  +L++M R     +  + +   R + PD+AI S F+VGFPGET+DDFR  +
Sbjct: 280 DIPFQHASPSVLRAMKRPANEAKVLERLRSWREICPDLAIRSSFVVGFPGETEDDFRYLL 339

Query: 352 DLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVG 411
           D +++    +  +F++ P  G   +++   V E VK ER   L +K      +  +A VG
Sbjct: 340 DWLEEAQLDRVGAFRFEPVAGAVANDLPGAVPEEVKEERYARLMEKTEAISRARLEAKVG 399

Query: 412 QIIEVLIEKHGKEK--------GKLVGRSPWLQSVVLNSK---NHNIGDIIKVRITDVKI 460
           + + V+I++ G+          G+    +P +   V           GD + V + D   
Sbjct: 400 RTLRVIIDEVGEPDEEGDIGATGRSQADAPEIDGAVYLRDVPATLAPGDFVDVVVEDADA 459

Query: 461 STLYGEL 467
             LYG +
Sbjct: 460 HDLYGVI 466


>gi|322800811|gb|EFZ21687.1| hypothetical protein SINV_11782 [Solenopsis invicta]
          Length = 538

 Score =  340 bits (872), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 121/469 (25%), Positives = 207/469 (44%), Gaps = 35/469 (7%)

Query: 11  AHMVSQIVDQCIVP--QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLN 68
             +    V   ++P  Q  +VK++GC  N  D+  M     + GY        ADL +LN
Sbjct: 43  EQVSQPSVLSSVIPGTQTIYVKTWGCTHNSSDTEYMAGQLATYGYNLTEDKLKADLWLLN 102

Query: 69  TCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVV 128
           +C ++  A ++  + +   +N+            VVVAGCV Q   +    +      V+
Sbjct: 103 SCTVKNPAEDQFRNEIEHGKNI---------GKHVVVAGCVPQGAPKSSFLQG---LSVI 150

Query: 129 GPQTYYRLPELLERARFGKRVVDTDYSVED-KFERLSIVDGGYNRKRGVTAFLTIQEGCD 187
           G Q   R+ E++E    G  V       +  K    + +     R+  +   + I  GC 
Sbjct: 151 GVQQIDRVVEVVEETLKGNTVRFLKQKKDSGKKIGGASLSLPKVRRNPLIEIIAINTGCL 210

Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTF 247
             CT+C   + RG   S    ++V+ A++  + GVCE+ L  ++  A  G+ +       
Sbjct: 211 NQCTYCKTKHARGELGSYPPEEIVERAKQAFEEGVCELWLTSEDTGA-YGRDI---GTNL 266

Query: 248 SDLLYSLSEI--------KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
            +LL+ L ++         G+    Y   H  +M+  L         +  +LH+PVQSGS
Sbjct: 267 PELLWQLVDVIPDGCMMRVGMTNPPYILEHLDEMAKIL-----QHPRVYSFLHIPVQSGS 321

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
           D++L  M R +T  E+  +++ +    P + I++D I GFP ET+ DF  TM L  K  +
Sbjct: 322 DQVLADMKREYTRAEFEHVVNFLSERVPGLTIATDIICGFPTETEMDFEETMTLCQKYKF 381

Query: 360 AQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419
              F  +Y PR GTP + ML +V       R   L +    Q        VG   +VL+ 
Sbjct: 382 PSLFINQYFPRPGTPAARML-KVPAQKVKARTKRLSEFF--QSYELYGHKVGLQQKVLVT 438

Query: 420 KHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           +   +K   VG + + + V++  K   +G +I V+I +    ++ GE +
Sbjct: 439 EVSHDKQHYVGHNKFYEQVLIPMKQEYMGKMIDVKIKEATKFSMKGEPI 487


>gi|258404284|ref|YP_003197026.1| MiaB-like tRNA modifying enzyme YliG [Desulfohalobium retbaense DSM
           5692]
 gi|257796511|gb|ACV67448.1| MiaB-like tRNA modifying enzyme YliG [Desulfohalobium retbaense DSM
           5692]
          Length = 438

 Score =  340 bits (872), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 110/449 (24%), Positives = 191/449 (42%), Gaps = 29/449 (6%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P R F  S GC  N  D+  +        Y     +  AD++++NTC   E A E+    
Sbjct: 6   PLRVFTISLGCPKNRVDTEFLLGALGGA-YAPAQDITSADVVLINTCAFIEPAVEESVQQ 64

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +  + +  +  +      L+ V GC+    G+++    P V++ +      +  E L +A
Sbjct: 65  ILEVADDISDLV---PRPLLAVTGCLVARYGQDLKAGLPEVDLWLPLAEQDQWGERLAQA 121

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
                                            +A+L I EGCD  C FC++P  RG   
Sbjct: 122 LG---------------RSFPGGRERILTTGPASAYLKISEGCDHACRFCIIPQLRGPLQ 166

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR + ++V EA  L+D G  E+ L+ Q+V +  G+ L G +     L+ +LS + GL  +
Sbjct: 167 SRPVEELVREAGSLVDQGARELVLVAQDV-SNYGQDL-GMRQGLQRLVEALSAVPGLDWI 224

Query: 264 RYTTSHPRDMSDCLIKAHGDL-DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           R    +P  ++  L++   D   +++P   +P+Q     IL  M R      YR +I  +
Sbjct: 225 RLLYLYPVGVTTELLRFLRDSAPLVVPSFDIPLQHAHPDILTQMGRPFARDPYR-VIATV 283

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R V P  A+ +  IVG+PGE +  F      V ++ +     F Y    GTP + + +QV
Sbjct: 284 RDVLPQAALRTSLIVGYPGEKEAHFAYLRQFVQEVRFHNLGVFPYYAEEGTPAATLPDQV 343

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGR----SPWLQS 437
            E VK +R   +     +   +  ++C G  ++VL+E+          GR    +P +  
Sbjct: 344 PEAVKNDRREQIMGDQAQISETILESCQGTTMDVLVERPDPHWPTLFQGRVWFQAPEVDG 403

Query: 438 V-VLNSKNHNIGDIIKVRITDVKISTLYG 465
           V  ++  +   G ++   I + K   L  
Sbjct: 404 VTYVSGHSLQAGQLVHAEIEESKTYDLVA 432


>gi|262384855|ref|ZP_06077987.1| MiaB-like tRNA modifying enzyme [Bacteroides sp. 2_1_33B]
 gi|262293571|gb|EEY81507.1| MiaB-like tRNA modifying enzyme [Bacteroides sp. 2_1_33B]
          Length = 444

 Score =  340 bits (872), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 126/438 (28%), Positives = 209/438 (47%), Gaps = 17/438 (3%)

Query: 17  IVDQCIVP-QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREK 75
           ++DQ +   ++    + GC++N  ++  +  +   QG  +V   + AD+ V+NTC + E 
Sbjct: 1   MIDQTVFNNKKAAYYTLGCKLNFAETSTIGKLLAEQGVRKVRPGEKADICVVNTCSVTEL 60

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135
           A +K    + RI        K+     +VV GC AQ + EE+      V++V+G +    
Sbjct: 61  ADKKCRQAIRRI-------SKQHPGAFIVVTGCYAQLKPEEV-SHIEGVDLVLGAEQKLE 112

Query: 136 LPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
           + + LE     +       S        S      +R R    FL +Q+GCD +C++C +
Sbjct: 113 ILQYLENLEKKEHGGTVIASQSKDIRSFSPSCSADDRTR---HFLKVQDGCDYYCSYCTI 169

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
           P+ RG   + +++ +V++AR++   G  EI L G N+    G        TF DL+ +L 
Sbjct: 170 PFARGRSRNGTIASMVEQAREVASKGGKEIVLTGVNI----GDFGKSTDETFIDLIRALD 225

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
           E++G+VR R ++  P  ++D  I          P+ H+P+QSGSD +L+ M RR+    +
Sbjct: 226 EVEGIVRYRISSIEPNLITDEAIDFVAHSKRFAPHFHIPLQSGSDAVLQLMRRRYDTALF 285

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
           R  I++I+ V P   I  D IVG  GETD+ F      +D +  +Q   F YS R GT  
Sbjct: 286 RHKIEKIKEVMPHAFIGVDVIVGTRGETDEYFEEARQFIDSLDISQLHVFSYSERPGTQA 345

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWL 435
             +   VD   K  R   L     ++  +F +A +GQ   VL E H K+ GK+ G +   
Sbjct: 346 LKIDYVVDPKTKHARSQQLLDISDQKLHAFYEAHIGQEANVLFE-HTKKDGKMHGFTENY 404

Query: 436 QSVVLNSKNHNIGDIIKV 453
             V +      + +  KV
Sbjct: 405 IKVEIPYDATLVNETRKV 422


>gi|34763184|ref|ZP_00144150.1| Fe-S OXIDOREDUCTASE (1.8.-.-) [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
 gi|27887153|gb|EAA24258.1| Fe-S OXIDOREDUCTASE (1.8.-.-) [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
          Length = 435

 Score =  340 bits (872), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 123/445 (27%), Positives = 224/445 (50%), Gaps = 20/445 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++    + GC++N Y++  +++    +GYE V   D +D+ ++N+C +   A  K  + L
Sbjct: 5   KKVAFHTLGCKVNQYETESIKNQLIKRGYEEVPFEDKSDIYIINSCTVTSIADRKTRNML 64

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R +       K   D  V+V GC AQ    EIL     V+ V+  +    +   +    
Sbjct: 65  RRAK-------KINPDAKVIVTGCYAQTNSREIL-EIEDVDFVIDNKNKSNIVNFVGAIE 116

Query: 145 --FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
               +R  + +   E +++           +    A++ IQ+GC+ FC++C +P+ RG  
Sbjct: 117 DISFEREKNGNIFQEKEYQEYEFATL----REMTRAYVKIQDGCNHFCSYCKIPFARGKS 172

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR    ++ E  KL+++G  E+ L+G +++A  GK    EK  F  LL  + +IK L R
Sbjct: 173 RSRKKENILKEIEKLVEDGFKEVILIGIDLSA-YGKDFK-EKDNFESLLEDILKIKDLKR 230

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R  + +P  ++D  I+   + + LMP+LH+ +QS  D +LK+M R + +   R+ + ++
Sbjct: 231 VRIGSVYPDKITDRFIELFKN-ENLMPHLHISLQSCDDTVLKNMRRNYGSSLIRESLLKL 289

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           +S   ++  ++D IVGFP E +  F+ T D++ +I ++    F+YS R GT  SNM  +V
Sbjct: 290 KSKVKNMEFTADVIVGFPKEDETMFQNTYDVIKEIEFSGLHIFQYSDREGTIASNMDGKV 349

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
           D   K +R   L    +E  ++     + + +EVL+E+  ++ G+  G S     V   S
Sbjct: 350 DAKTKKQRADRLDNLKQEMILNSRKKYLEKNLEVLVEE--EKDGEYFGYSQNYLRVKFRS 407

Query: 443 KN-HNIGDIIKVRITDVKISTLYGE 466
              + +  +I V+I  VK   L  E
Sbjct: 408 DEKNLVNKLINVKIKCVKNDILIAE 432


>gi|115458480|ref|NP_001052840.1| Os04g0434300 [Oryza sativa Japonica Group]
 gi|113564411|dbj|BAF14754.1| Os04g0434300 [Oryza sativa Japonica Group]
          Length = 621

 Score =  340 bits (871), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 121/462 (26%), Positives = 212/462 (45%), Gaps = 24/462 (5%)

Query: 9   GVAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLN 68
            VA    Q   +    Q  +VK++GC  N  DS  M     + GY      + ADL ++N
Sbjct: 37  RVAQTRPQPEARIPGTQTIYVKTFGCSHNQSDSEYMSGQLSAFGYAITEEPEGADLWLIN 96

Query: 69  TCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVV 128
           TC ++  +   + + + + ++             +VVAGCV Q   +  L+    ++ V+
Sbjct: 97  TCTVKNPSQSAMTTLISKCKSANKP---------LVVAGCVPQGSRD--LKELEGIS-VI 144

Query: 129 GPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
           G Q   R+ E++E    G  V             L  +D    RK      L I  GC  
Sbjct: 145 GVQQIDRVVEVVEETLKGHEVRLLSRKT------LPSLDLPKVRKNKFIEILPINVGCLG 198

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS 248
            CT+C   + RG   S ++  +VD  + ++  GV EI L  ++  A  G+ +        
Sbjct: 199 ACTYCKTKHARGHLGSYTIESLVDRVKIVVSEGVREIWLSSEDTGA-YGRDIGTNLPNLL 257

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCL--IKAHGDLDVLMPYLHLPVQSGSDRILKSM 306
           + + +         LR   ++P  + + L  I +      +  +LH+PVQSGSD +L +M
Sbjct: 258 NGIAAELPADRSTMLRIGMTNPPFILEHLKEIASVLCHPCVYSFLHVPVQSGSDAVLTAM 317

Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
           NR +T  E+R+++D +  + P + I++D I GFPGETD+DF  T++LV +  + Q    +
Sbjct: 318 NREYTVSEFRRVVDTLCELVPGMQIATDIICGFPGETDEDFSQTVNLVKQYLFPQVHISQ 377

Query: 367 YSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG 426
           + PR GTP + M ++V      +R   L      +  S      G++  + I +   +  
Sbjct: 378 FYPRPGTPAARM-KKVPSVEVKKRSRELTSVF--ESFSPYQGMEGKVERIWITEIATDGV 434

Query: 427 KLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            LVG +     V++ + +  +G    V+IT V   +++GE++
Sbjct: 435 HLVGHTKGYIQVLVIAPDSMLGTSADVKITSVGRWSVFGEVI 476


>gi|83944908|ref|ZP_00957274.1| hypothetical protein OA2633_09774 [Oceanicaulis alexandrii
           HTCC2633]
 gi|83851690|gb|EAP89545.1| hypothetical protein OA2633_09774 [Oceanicaulis alexandrii
           HTCC2633]
          Length = 418

 Score =  340 bits (871), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 133/440 (30%), Positives = 217/440 (49%), Gaps = 28/440 (6%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           + ++GC++N ++S  M D   + G         +D +++NTC +  +A  +    + R++
Sbjct: 3   IVTFGCRLNAWESEVMRDHARAGGL--------SDAVIINTCAVTNEAVRQARQTIRRMK 54

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
                  +E  D  ++V GC AQ + E+  + +  V+ V+G     R          G  
Sbjct: 55  -------RERPDARMIVTGCAAQIDPEQFAKMA-EVDQVLGNAEKLRPETFKSTVIGGGD 106

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
            V  D  +        +VDG   R R   A++ +Q GCD  CTFC++PY RG   S    
Sbjct: 107 KVKVDDIMAVSEIASHLVDGLDGRAR---AYVQVQTGCDHRCTFCIIPYGRGNARSAPAG 163

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
           +VVD+ ++L++ G  E+ L G ++ +W G+ L G       +   L ++  L RLR ++ 
Sbjct: 164 EVVDQVKRLVETGHSEVVLTGVDMTSW-GQDLPGTPKLGRLVRAILKQVPDLQRLRLSSI 222

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
              ++ + L +A  + + L PY+HL +Q+G D ILK M RRH+  +   +  R+R+VRPD
Sbjct: 223 DAIEIDEDLFRAIAEEERLCPYMHLSLQAGDDMILKRMKRRHSRDDAIALAKRLRAVRPD 282

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           IA  +D I GFP ET++ F+ ++ LVD+   A    F YSPR GTP + M  QVD  V  
Sbjct: 283 IAFGADLIAGFPTETEEMFQNSLRLVDECDLAFVHVFPYSPRPGTPAARMP-QVDREVVK 341

Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIG 448
           ER   L+ K  E       + VG+ + VL+EK G        R+     V + S     G
Sbjct: 342 ERAARLRAKSHEALQRHLASRVGKQMTVLVEKPG------FARADDFTPVRMKSG-ARPG 394

Query: 449 DIIKVRITDVKISTLYGELV 468
            +++  IT      L+   +
Sbjct: 395 ALVRAMITGHDEKALFATPL 414


>gi|87198868|ref|YP_496125.1| hypothetical protein Saro_0846 [Novosphingobium aromaticivorans DSM
           12444]
 gi|123736270|sp|Q2GA32|RIMO_NOVAD RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|87134549|gb|ABD25291.1| SSU ribosomal protein S12P methylthiotransferase [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 471

 Score =  340 bits (871), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 128/487 (26%), Positives = 213/487 (43%), Gaps = 48/487 (9%)

Query: 8   IGVAHMVSQIVDQCIV-PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIV 66
           +G A M SQI  + I    +  + S GC   + DS R+     + GY        AD+++
Sbjct: 1   MGRAKMASQIPPREIPEAPKVGMVSLGCPKALVDSERILTRLRADGYAMSADYAGADVVL 60

Query: 67  LNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNV 126
           +NTC   + A E+  S +G              +  V+V GC+   E E I  + P V  
Sbjct: 61  VNTCGFLDSAKEESLSAIGEA---------IAENGRVIVTGCMGN-EAEAIRAKFPQVLA 110

Query: 127 VVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGC 186
           V G   Y  + E +  A         D   +     + +    Y       ++L I EGC
Sbjct: 111 VTGAHQYEAVVEAVHEAAPPSMGPYIDLIPQADPGDVKLTPRHY-------SYLKISEGC 163

Query: 187 DKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE--- 243
           +  C FC++P  RG   SR +  V+ EA KL+  G  E+ ++ Q+ +A  G  +  E   
Sbjct: 164 NHACAFCIIPSLRGKLASRRIDAVLREAEKLVAAGTKELLVISQDTSA-YGVDVRHEERM 222

Query: 244 ------KCTFSDLLYSLSEIK------GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL 291
                 +   +DL   L +++        VRL Y   +P   +   + A G   ++ PYL
Sbjct: 223 WKGRPVRTHMTDLARELGQLRTPQGETPWVRLHYVYPYPHVDAVIPLMAEG---LVTPYL 279

Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351
            +P Q  S  +L++M R     +  + I   R + PD+AI S F+VGFPGET  DF   +
Sbjct: 280 DIPFQHASPNVLRAMKRPANEAKVLERIKAWREICPDLAIRSSFVVGFPGETQADFEYLL 339

Query: 352 DLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVG 411
           + +++    +   F++ P  G   +++ +QV E +K ER   L +K      +   A VG
Sbjct: 340 EWLEEAQLDRVGGFRFEPVAGAAANDLPDQVPEEIKEERYARLMEKTEAISAARLSAKVG 399

Query: 412 QIIEVLIEKHGK--EKG------KLVGRSPWLQSVVL---NSKNHNIGDIIKVRITDVKI 460
           + I+V++++ G+  E G      +    +P +   V       +   GD  +V + D   
Sbjct: 400 RHIKVIVDEVGEPDEDGDIGATARSQADAPEIDGAVYLRNVPASLKPGDFAEVLVEDADA 459

Query: 461 STLYGEL 467
             LYG +
Sbjct: 460 HDLYGVI 466


>gi|289547853|ref|YP_003472841.1| MiaB-like tRNA modifying enzyme YliG [Thermocrinis albus DSM 14484]
 gi|289181470|gb|ADC88714.1| MiaB-like tRNA modifying enzyme YliG [Thermocrinis albus DSM 14484]
          Length = 421

 Score =  340 bits (871), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 119/451 (26%), Positives = 220/451 (48%), Gaps = 41/451 (9%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R  V S GC  N+ D+  +       G + VN    AD+I++NTC   ++A E+    + 
Sbjct: 2   RVAVISLGCAKNLVDTEVLLGKLVKGGAKLVNDPSKADVIIVNTCGFIQQAKEEAIDTIL 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL--ERA 143
              + K           VVV GC+ +   EE+ +  P V+   G +++ ++ + L  +  
Sbjct: 62  DWADGKRK---------VVVMGCLVERYREEMKKEFPEVSAFFGTESWDQIIQYLGLKEV 112

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           +  +RV+ T  S                      A+L + EGC++ C+FC +P  RG   
Sbjct: 113 KSSERVLTTPPSY---------------------AYLKVAEGCNRTCSFCAIPLIRGRHR 151

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           S+ L  +++EAR L + GV E+ ++ Q+   + GK L   K     LL  L E++G+  +
Sbjct: 152 SKPLEDLLEEARNLAERGVKELCIVSQDTG-YYGKDLYHRKA-LVQLLKKLEELEGIEWI 209

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R    +P D+ + L+    D   ++PYL +P+Q  SDR+LKSM R ++    R+++D + 
Sbjct: 210 RLLYLYPTDVDEELLSYLKDSGKVLPYLDIPLQHVSDRVLKSMRRGYSGSFVRRLLDEVM 269

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
               ++ + + F+VG+P E ++DFR  +  V++  +     F YS    TP   + + + 
Sbjct: 270 KNLDNVVLRTTFLVGYPEEREEDFRELLRFVEEGYFHWVGVFTYSHEENTPAYPLGDPIP 329

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL-VGR----SPWLQSV 438
           ++ K  R   + K  +E     N   VG+ +++L++ + +E G + VGR    +P +  +
Sbjct: 330 QDEKELRRDAIMKAQQEITFRKNAQLVGREMDLLVDSYDEELGIVPVGRVYLQAPEVDGI 389

Query: 439 --VLNSKNHNIGDIIKVRITDVKISTLYGEL 467
             V   +  + G+ +KV++T+     L  E+
Sbjct: 390 CYVEADRPISPGEKLKVKVTEAVGYDLKVEV 420


>gi|254292479|ref|YP_003058502.1| MiaB-like tRNA modifying enzyme [Hirschia baltica ATCC 49814]
 gi|254041010|gb|ACT57805.1| MiaB-like tRNA modifying enzyme [Hirschia baltica ATCC 49814]
          Length = 435

 Score =  340 bits (871), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 131/446 (29%), Positives = 203/446 (45%), Gaps = 33/446 (7%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
             + + GC++N Y+S  M +     G          D I++NTC +  +A  +    + R
Sbjct: 19  VDILTLGCRLNSYESEVMRNHASDAGLN--------DAIIVNTCAVTNEAVRQARQTIRR 70

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGP----QTYYRLPELLER 142
            R       K+  D  ++V GC AQ + + +    P V  V+G     Q     P  L  
Sbjct: 71  AR-------KDRPDTPIIVTGCAAQVDPD-MFANMPEVTRVIGNNEKMQAETFQPANLLN 122

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
               K VV+   SV +    L  VDG   R R   AF+ +Q GCD  CTFC++PY RG  
Sbjct: 123 ETAPKAVVNDIMSVTETAGHL--VDGLEGRAR---AFVQVQTGCDHRCTFCIIPYGRGNS 177

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            S    +VVD+ R+L+  G  E+ L G ++ +W G  L       + +   L     L +
Sbjct: 178 RSVPAGEVVDQVRQLVAKGHYEVVLTGVDLTSW-GADLPNAPNLGNLVARILKLAPDLKQ 236

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LR ++    ++ D L         + P+LHL  QSG + ILK M RRH+  +   +  R+
Sbjct: 237 LRLSSIDAIEIDDQLFDLIAHDKRIAPHLHLSFQSGDNMILKRMKRRHSREDAINLCQRL 296

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+ RP+I+  +D I GFP ETD+ F  TM  VD+ G      F YS R GTP + +  Q+
Sbjct: 297 RAARPEISFGADLIAGFPTETDEMFANTMACVDECGLDYLHVFPYSARPGTPAARIP-QL 355

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
           +  +  +R   L+ K +E+ +   D  VG   + L+E  G+       R P    + +  
Sbjct: 356 NGEIIKDRAAQLRDKGQERLLLRLDRHVGTTQDALVEMGGR------ARLPDFAPIRIEG 409

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
                G ++ + I       L G L+
Sbjct: 410 DAPKPGSVVTLDIHSRDDKDLIGRLL 435


>gi|268317548|ref|YP_003291267.1| MiaB-like tRNA modifying enzyme [Rhodothermus marinus DSM 4252]
 gi|262335082|gb|ACY48879.1| MiaB-like tRNA modifying enzyme [Rhodothermus marinus DSM 4252]
          Length = 441

 Score =  340 bits (871), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 133/450 (29%), Positives = 214/450 (47%), Gaps = 24/450 (5%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           +P R    + GC++N  ++  +E  F ++ YE V   + AD+ V+NTC +  +A  +   
Sbjct: 1   MP-RVSFYTLGCKLNFAETSTLERDFLARHYEVVPFGEPADVTVINTCTVTAEAERQCRQ 59

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            + R        I++  +  ++V GC AQ   EEI  R   V+VV+G +  + L EL+E 
Sbjct: 60  IIRRA-------IRQNPNAFIIVTGCYAQLRPEEIA-RIEGVDVVLGAREKFHLFELIES 111

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            +  ++       +++  E        ++      AFL IQ+GCD  C+FC +P  RG  
Sbjct: 112 FQKKEQTQVAVSCIDELQEFGP----AFSSTERTRAFLKIQDGCDYVCSFCTIPKARGRS 167

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            S+ +   V +AR+L + G  EI L G N+  +  +       T  DLL  L  ++G+ R
Sbjct: 168 RSQPIEATVAQARQLAEMGFKEIVLTGVNIGLYGQEF----GATLLDLLRELDRVEGIER 223

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
            R ++  P  ++D +I    +    MP+ H+P+QSG + +L  M RR+    Y + + RI
Sbjct: 224 YRISSIEPNLLTDEIIAFVAESRAFMPHFHMPLQSGDNFVLGKMRRRYRRELYAERVARI 283

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG----SNM 378
           R + PD AI  D IVGFP ET + F  T   ++++  +    F YS R GT        M
Sbjct: 284 RELLPDAAIGVDVIVGFPTETPERFENTYRFLNELPISYLHVFTYSERPGTAAVEQLERM 343

Query: 379 LEQ-VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQS 437
             Q V +  ++ R   LQ    +++ +F  A  GQ+  VL E   K  G + G +     
Sbjct: 344 GGQPVPKPERSRRNRMLQVLSHKKRHAFYRAHQGQVRPVLWESTEKH-GLMYGYTDNYIR 402

Query: 438 VVLNSKNHNIGDIIKVRITD-VKISTLYGE 466
           V        +G I  VR+ D     TL  E
Sbjct: 403 VQRPFDPERVGQIEPVRLGDFAPDGTLVAE 432


>gi|139439619|ref|ZP_01773032.1| Hypothetical protein COLAER_02059 [Collinsella aerofaciens ATCC
           25986]
 gi|133774960|gb|EBA38780.1| Hypothetical protein COLAER_02059 [Collinsella aerofaciens ATCC
           25986]
          Length = 449

 Score =  340 bits (871), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 127/456 (27%), Positives = 206/456 (45%), Gaps = 30/456 (6%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
            ++ + GC  N  D+ RM  +  + GYE      DAD+ ++NTC     A  +       
Sbjct: 9   LYI-TLGCAKNEVDTDRMRSLLTAAGYEEAFDPQDADIAIVNTCSFLASATSESIETTLE 67

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           + N     ++      +V+ GCV    G+++    P V   V       +  +++     
Sbjct: 68  LANEVQDGVRSCP---IVMCGCVPSRYGDDLPDELPEVAAFVKADEEDGIVAVIDGVLGV 124

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           +R            E  + +        G  A++ I +GC++FC+FC++PY RG   SR+
Sbjct: 125 ER------------EIAAYIPQVKRTVEGAVAYVKISDGCNRFCSFCMIPYIRGRYHSRN 172

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-----GEKCTFSDLLYSLSEI--KG 259
              ++ E R L+  GV EI L+GQ+   W     D     G     + LL +++E     
Sbjct: 173 SESIISEVRDLVAGGVREIVLIGQDTGIWGTDFADEDVADGSPRNLAQLLRAVAEAVRPH 232

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
            V +R     P  M+D LI    D   ++PY+ +PVQ    RILK+M R  +  E   + 
Sbjct: 233 NVWVRVLYLQPEGMTDELIDTIRDTPEVLPYIDIPVQHCDARILKAMRRSGSRQELEDLF 292

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
             +R   P I I S  +VGFP ETDD+FR  +D +D +G+     F YS   G+  + M 
Sbjct: 293 RDLRERIPGIVIRSTAMVGFPTETDDEFRDLIDFMDTVGFDYTSVFAYSREEGSLAAKME 352

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE--KHGKEKGKLVGR----SP 433
            QVDE VK ER             +   A VG+  +V+++  +  ++  +L+G     +P
Sbjct: 353 GQVDEEVKLERAQEAMDLAESLGFAATAAHVGERAQVIVDGIEETEDGAELIGHAWFQAP 412

Query: 434 WLQS-VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
                V L++   ++GDI+ V  TD     L G +V
Sbjct: 413 DSDGAVHLDASEASVGDILTVEFTDSFCYELIGHVV 448


>gi|94497461|ref|ZP_01304031.1| hypothetical protein SKA58_07900 [Sphingomonas sp. SKA58]
 gi|94423092|gb|EAT08123.1| hypothetical protein SKA58_07900 [Sphingomonas sp. SKA58]
          Length = 459

 Score =  340 bits (871), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 129/478 (26%), Positives = 217/478 (45%), Gaps = 52/478 (10%)

Query: 13  MVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHI 72
           M ++I D      +  + S GC  N+ DS R+     S GY+       AD++++NTC  
Sbjct: 6   MATKIPDAP----KIGMVSLGCPKNLVDSERILTKLRSDGYQMSADYAGADVVLVNTCGF 61

Query: 73  REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT 132
            + A E+    +G              +  V+V GC+   E E I  + P V  V G   
Sbjct: 62  LDSAKEESLEAIGEA---------IAENGRVIVTGCMGD-EAEVIRAKFPQVLAVTGAHQ 111

Query: 133 YYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTF 192
           Y ++   +          D    + + F  L + +GG        ++L I EGC+  C+F
Sbjct: 112 YEQVVNAVH---------DASPPIPNAFVDL-VPEGGLKLTPRHYSYLKISEGCNHRCSF 161

Query: 193 CVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLD 241
           C++P  RG  +SR +  V+ EA KL+  G  E+ ++ Q+ +A           W+G+ + 
Sbjct: 162 CIIPSIRGDLVSRRIDAVLREAEKLVAAGTKELLVISQDTSAYGVDTRHDVRQWKGRDVR 221

Query: 242 GEKCTFSDLLYSLSEIKG---LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
                 +  L  L   +G    VRL Y   +P       + A G   +L PYL +P Q  
Sbjct: 222 AHMTDLARELGQLRTAEGRAPWVRLHYVYPYPHVDQVIPLMADG---LLTPYLDIPFQHA 278

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           +  +LK+M R     +    I + R++ PDIAI S F+VGFPGET+ DF+  +D +D+  
Sbjct: 279 APNVLKAMKRPANEAKVLDRIRKWRAICPDIAIRSSFVVGFPGETEADFQYLLDWLDEAQ 338

Query: 359 YAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI 418
             +  +F++ P  G   + + + V E VK ER   + ++      +   A VG+I+ V+I
Sbjct: 339 LDRVGAFRFEPVEGAAANALPDAVTEEVKEERYQRIMERTAAISAAKLQAKVGRILPVII 398

Query: 419 EKHGK-EKGKLVG-------RSPWLQSVVL---NSKNHNIGDIIKVRITDVKISTLYG 465
           ++ G+ ++   +G        +P +   V      + H  GDI+ + + D     LYG
Sbjct: 399 DEVGEPDEDGSIGATARSQADAPEIDGNVFLRDVGEGHRAGDIVDIVVEDADDHDLYG 456


>gi|256842238|ref|ZP_05547742.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Parabacteroides sp. D13]
 gi|301308989|ref|ZP_07214934.1| Fe-S oxidoreductase [Bacteroides sp. 20_3]
 gi|256736122|gb|EEU49452.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Parabacteroides sp. D13]
 gi|300833015|gb|EFK63640.1| Fe-S oxidoreductase [Bacteroides sp. 20_3]
          Length = 444

 Score =  340 bits (871), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 125/438 (28%), Positives = 209/438 (47%), Gaps = 17/438 (3%)

Query: 17  IVDQCIVP-QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREK 75
           ++DQ +   ++    + GC++N  ++  +  +   QG  +V   + AD+ V+NTC + E 
Sbjct: 1   MIDQTVFNNKKAAYYTLGCKLNFAETSTIGKLLAEQGVRKVRPGEKADICVVNTCSVTEL 60

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135
           A +K    + RI        K+     +VV GC AQ + EE+      V++V+G +    
Sbjct: 61  ADKKCRQAIRRI-------SKQHPGAFIVVTGCYAQLKPEEV-SHIEGVDLVLGAEQKLE 112

Query: 136 LPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
           + + LE     +       S        S      +R R    FL +Q+GCD +C++C +
Sbjct: 113 ILQYLENLEKKEHGGTVIASQSKDIRSFSPSCSADDRTR---HFLKVQDGCDYYCSYCTI 169

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
           P+ RG   + +++ +V++A+++   G  EI L G N+    G        TF DL+ +L 
Sbjct: 170 PFARGRSRNGTIASMVEQAQEVARKGGKEIVLTGVNI----GDFGKSTDETFIDLIRALD 225

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
           E++G+VR R ++  P  ++D  I          P+ H+P+QSGSD +L+ M RR+    +
Sbjct: 226 EVEGIVRYRISSIEPNLITDEAIDFVAHSKRFAPHFHIPLQSGSDAVLQLMRRRYDTALF 285

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
           R  I++I+ V P   I  D IVG  GETD+ F      +D +  +Q   F YS R GT  
Sbjct: 286 RHKIEKIKEVMPHAFIGVDVIVGTRGETDEYFEEARQFIDSLDISQLHVFSYSERPGTQA 345

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWL 435
             +   VD   K  R   L     ++  +F +A +GQ   VL E H K+ GK+ G +   
Sbjct: 346 LKIDYVVDPKTKHARSQQLLDISDQKLHAFYEAHIGQEANVLFE-HTKKDGKMHGFTENY 404

Query: 436 QSVVLNSKNHNIGDIIKV 453
             V +      + +  KV
Sbjct: 405 IKVEIPYDAALVNETRKV 422


>gi|150025205|ref|YP_001296031.1| hypothetical protein FP1133 [Flavobacterium psychrophilum JIP02/86]
 gi|149771746|emb|CAL43220.1| Protein of unknown function [Flavobacterium psychrophilum JIP02/86]
          Length = 442

 Score =  340 bits (871), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 120/439 (27%), Positives = 207/439 (47%), Gaps = 17/439 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++    + GC++N  ++  +   F  +G++RV+  + AD+ V+NTC + E A +      
Sbjct: 5   KKVAFYTLGCKLNFSETSTIARNFQDEGFDRVDFEEIADMYVINTCSVTENADK------ 58

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            + + +    +K      +   GC AQ + EE+      V++V+G    +++ + +    
Sbjct: 59  -QFKQIVKKAMKLNDKAFIAAVGCYAQLKPEELAAVD-GVDLVLGATEKFKITDYINDLS 116

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
              R       +E+         G Y+      AFL +Q+GCD  CT+C +P  RGI  S
Sbjct: 117 KNDRSEVHSCEIEEA----DFYVGSYSIGDRTRAFLKVQDGCDYKCTYCTIPLARGISRS 172

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK---CTFSDLLYSLSEIKGLV 261
            +L  V+  A  +   G+ EI L G N+    GKG  G K    TF DL+ +L ++KG+ 
Sbjct: 173 DALENVLKNASDISKQGIKEIVLTGVNIG-DYGKGEFGNKKHEHTFLDLVQALDKVKGIE 231

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           RLR ++  P  + +  I         +P+ H+P+QSGS+ IL  M RR+    Y   +  
Sbjct: 232 RLRISSIEPNLLKNETIDFVSKSRTFVPHFHIPLQSGSNEILGKMKRRYQREVYTDRVAN 291

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           IR V P   I  D IVGFPGET+  F  + + ++++  +    F YS R  T  + M   
Sbjct: 292 IRQVMPHACIGVDIIVGFPGETEAHFLESYNFLNEMDISYLHVFTYSERDNTEAATMDGV 351

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           V  NV+ +R   L+    +++ +F ++ +G    VL E   KE G + G +     V   
Sbjct: 352 VPMNVRNKRSKMLRGLSVKKRRAFYESQLGTNRTVLFESENKE-GYIHGFTENYIKVKTP 410

Query: 442 SKNHNIGDIIKVRITDVKI 460
                +  + ++ +T +  
Sbjct: 411 WNPELVNTLQEINLTKIDE 429


>gi|294101399|ref|YP_003553257.1| MiaB-like tRNA modifying enzyme YliG [Aminobacterium colombiense
           DSM 12261]
 gi|293616379|gb|ADE56533.1| MiaB-like tRNA modifying enzyme YliG [Aminobacterium colombiense
           DSM 12261]
          Length = 429

 Score =  340 bits (871), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 116/449 (25%), Positives = 198/449 (44%), Gaps = 30/449 (6%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
            ++ S GC  N  DS  +  M  + G+  V+S+D+A + ++NTC   + A E+    +  
Sbjct: 3   IYIISLGCAKNSVDSENLIGMLRAAGFRVVDSIDEAQVAIVNTCGFIQPAVEENVDIILD 62

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           +  LK      G    + V GC+    GEE+ +  P V++    + +  +   L      
Sbjct: 63  LERLKEE----GRLQKIGVVGCLVNRYGEELKKELPSVDIWSQAEEWESVVRQLGAKPSN 118

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
            +                   G     R  + +L + EGCD FC++C +P  RG   S  
Sbjct: 119 WQ------------------RGMLPGTRPWSRYLKVGEGCDSFCSYCTIPSIRGWARSYP 160

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
           +  +  EA +L++ G  EI L+GQ++    G+ + G+    + L    + +   V LR  
Sbjct: 161 IEVLTSEASRLVEEGAREICLVGQDLT-VYGRDVYGKPSLIALLDSLTASLPQEVWLRLL 219

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
             HP  + +  I        ++PYL +P+Q     +L+ MNR+      R +   IR   
Sbjct: 220 YLHPARVDERFIDYISSSKSVLPYLDIPIQHVEGDLLRRMNRKENEESLRTLFGYIRKKN 279

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           P  A+ + FIVGFPGET++ F   +D  + +   +  +F Y    GT  + +  Q+   +
Sbjct: 280 PLFALRTTFIVGFPGETEEQFEKVLDFAEDMEIDRVGAFAYCAEEGTIAATLPGQLSSKI 339

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVV--L 440
           K ER   L +   E  +      VG+ + VL+E    E     GRS    P +  +V  +
Sbjct: 340 KEERYNRLMELQSEISLRRQSLFVGRELTVLVETIDNEDNIAWGRSYRDAPEVDGLVGIM 399

Query: 441 NSKNHNIGDIIKVRITDVKISTLYG-ELV 468
              +   G  +KV+IT+ +   L G E+V
Sbjct: 400 EGAHLKEGAFVKVKITEAEEYDLLGVEVV 428


>gi|110678963|ref|YP_681970.1| RNA modification protein [Roseobacter denitrificans OCh 114]
 gi|123172670|sp|Q169Q9|RIMO_ROSDO RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|109455079|gb|ABG31284.1| RNA modification enzyme, MiaB-family, putative [Roseobacter
           denitrificans OCh 114]
          Length = 459

 Score =  339 bits (870), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 124/459 (27%), Positives = 204/459 (44%), Gaps = 33/459 (7%)

Query: 18  VDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA 77
            D+   P    + S GC   + DS R+     ++GY      D AD +++NTC   + A 
Sbjct: 21  PDRPGQP-TIGMVSLGCPKALVDSERILTRLRAEGYGISPDYDGADAVIVNTCGFLDSAK 79

Query: 78  EKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLP 137
            +  S +G              +  V+V GC+  AE E I    P V  V GPQ Y ++ 
Sbjct: 80  AESLSAIGEA---------LNENGRVIVTGCLG-AEPEYITGAHPKVLAVTGPQQYEQVL 129

Query: 138 ELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197
           + +  A              D F  L          R   ++L I EGC+  C FC++P 
Sbjct: 130 DAVHAA---------VPPSPDPFVDLLPATAVSLTPRHF-SYLKISEGCNHKCKFCIIPD 179

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW----RGKGLDGEKCTFSDLLYS 253
            RG   SR    V+ EA KL+DNGV E+ ++ Q+ +A+    +     G +   +DL   
Sbjct: 180 MRGRLASRPAHAVMREAEKLVDNGVRELLVISQDTSAFGVDIKHAEERGHRAHITDLARD 239

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
           L  +   VRL Y   +P      LI    D  +++PYL +P Q     +L+ M R   A 
Sbjct: 240 LGSLGAWVRLHYVYPYPHV--RQLIPLMAD-GLVLPYLDIPFQHAHPDVLRRMARPAAAA 296

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
           +    I   R++ PD+ + S FIVG+PGET+++F+  +D +D+    +   F+Y    G 
Sbjct: 297 KTLDEIAAWRAICPDLTLRSTFIVGYPGETEEEFQTLLDWLDEAQLDRVGCFQYENVAGA 356

Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG--KLVGR 431
             + + + V E+VK +R      K ++   +   A V Q +EV++++   +    +    
Sbjct: 357 RSNALPDHVPEDVKQDRWNRFMAKSQDISEAKLAAKVAQRLEVIVDEVDADAATCRTKAD 416

Query: 432 SPWLQSVVLNSKNH---NIGDIIKVRITDVKISTLYGEL 467
           +P +   +     H     GDI+ V + +     L+G L
Sbjct: 417 APEIDGNLFIDDGHDGLKPGDIVTVEVDEAGEYDLWGRL 455


>gi|254302942|ref|ZP_04970300.1| 2-methylthioadenine synthetase [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
 gi|148323134|gb|EDK88384.1| 2-methylthioadenine synthetase [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
          Length = 435

 Score =  339 bits (870), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 123/445 (27%), Positives = 222/445 (49%), Gaps = 20/445 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++    + GC++N Y++  +++    +GYE V   D +D+ ++N+C +   A  K  + L
Sbjct: 5   KKVAFHTLGCKVNQYETESIKNQLIKRGYEEVPFEDKSDIYIINSCTVTSIADRKTRNML 64

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R +       K   D  V+V GC AQ    EIL     V+ V+  +    +   +    
Sbjct: 65  RRAK-------KINPDAKVIVTGCYAQTNSREIL-EIEDVDFVIDNKNKSNIVNFVGAIE 116

Query: 145 --FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
               +R  + +   E +++           +    A++ IQ+GC+ FC++C +P+ RG  
Sbjct: 117 DISFEREKNGNIFQEKEYQEYEFATL----REMTRAYVKIQDGCNHFCSYCKIPFARGKS 172

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR    ++ E  KL+++G  E+ L+G +++A  G+    EK  F  LL  + +IK L R
Sbjct: 173 RSRKKENILKEIEKLVEDGFKEVILIGIDLSA-YGEDFK-EKDNFESLLEEILKIKNLKR 230

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R  + +P  ++D  I+   +   LMP+LH+ +QS  D +LK+M R + +   R+ + ++
Sbjct: 231 VRIGSVYPDKITDRFIELFKN-KNLMPHLHISLQSCDDTVLKNMRRNYGSSLIRESLLKL 289

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           +S   ++  ++D IVGFP E +  F+ T D++ +I ++    F+YS R GT  SNM  +V
Sbjct: 290 KSKVENMEFTADVIVGFPKEDETMFQNTHDVIKEIEFSGLHIFQYSDREGTIASNMDGKV 349

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
           D   K +R   L    +E  V      + + +EVL+E+  ++ G+  G S     V   S
Sbjct: 350 DAKTKKQRADRLDNLKQEMIVESRKKYLEKNLEVLVEE--EKDGEYFGYSQNYLRVKFKS 407

Query: 443 KN-HNIGDIIKVRITDVKISTLYGE 466
                I  +I ++I  V+   L GE
Sbjct: 408 DEKDLINKLINIKIKCVENDMLIGE 432


>gi|227872687|ref|ZP_03991017.1| possible 2-methylthioadenine synthetase [Oribacterium sinus F0268]
 gi|227841501|gb|EEJ51801.1| possible 2-methylthioadenine synthetase [Oribacterium sinus F0268]
          Length = 423

 Score =  339 bits (870), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 118/448 (26%), Positives = 212/448 (47%), Gaps = 39/448 (8%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQ--GYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           + +++S GC  N  D+ ++      +  G    +   +A++ ++NTC     A E+    
Sbjct: 2   KLYLESLGCDKNRVDAEKLLFELLQKYPGSSVTDEPSEAEIAIVNTCSFIGPAKEESIQC 61

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +  +   K      G    ++VAGC+ +   +EI +  P ++ +                
Sbjct: 62  ILDLAQYKE----TGKLEKLIVAGCLVERYKDEIRKELPEIDEIT--------------- 102

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
                      SV+D  +RL             + +L I EGCDK+C++C++P  RG   
Sbjct: 103 -----------SVKDYVKRLDHQMARVESGEKYSRYLKIAEGCDKYCSYCIIPRLRGHYR 151

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           S     V++EAR L+  G  E+ L+ Q      G  L  +K   ++LL  LSEI  L  +
Sbjct: 152 SIPKELVLEEARALVSEGAGELILVAQETT-LYGTDLY-KKKALAELLAELSEIPNLQWI 209

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R    +P ++   LI+       +  YL LP+Q  SDRILK MNRR    E ++ I  +R
Sbjct: 210 RILYCYPEEIEPELIREMKRNPKVCHYLDLPIQHASDRILKRMNRRTRKEELKEKIALLR 269

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              PDIA+ +  I GFPGET++DF+  +D + ++ + +  +F YS   GT  + M +Q+ 
Sbjct: 270 KEMPDIALRTTIITGFPGETEEDFQEVLDFISEMRFDRLGAFPYSQEEGTKAAEMEDQIP 329

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQS-V 438
           E +K +RL  + +  +       +  +G+ ++VL+  + +E+ +++ RS    P + S +
Sbjct: 330 EKLKNQRLSQIMELQQNIAFRKAEEQIGRKLKVLVCGYDEEEQRVLCRSYMDAPDVDSYL 389

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGE 466
            +  +   +G  +  ++ D +   L GE
Sbjct: 390 YVFGEKKEVGSFLYAKVIDTEGYDLIGE 417


>gi|317132114|ref|YP_004091428.1| MiaB-like tRNA modifying enzyme [Ethanoligenens harbinense YUAN-3]
 gi|315470093|gb|ADU26697.1| MiaB-like tRNA modifying enzyme [Ethanoligenens harbinense YUAN-3]
          Length = 427

 Score =  339 bits (870), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 127/444 (28%), Positives = 216/444 (48%), Gaps = 20/444 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    + GC++N Y++  ME      G+E V   D AD+ ++N+C +  ++  K    L 
Sbjct: 2   KAAFYTLGCKVNQYETQIMEQSLRDAGFEIVPPEDPADVFIVNSCTVTAESDRKTRQMLR 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R++       K     + V+ GC  QA  E+    +   +++ G +    + +L+ ++  
Sbjct: 62  RMK-------KRNPAAIAVLCGCYVQAAPEKAAAIAEA-DIIAGVRDRGDIAKLILQSMR 113

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNR--KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            K  +    S    FE+  + +    R  +    AF+ I++GC  FCT+C++P++RG   
Sbjct: 114 EKERLTHVPS----FEQGELFEPMQARGLEGHTRAFVKIEDGCRNFCTYCIIPFSRGPVR 169

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           S+   ++  E   L + G  E  L+G N++A  G  L     T +D + +   + GL R+
Sbjct: 170 SKPPEEITAELATLREQGYAEAVLVGINLSA-YGSDL---GRTLADAVDAAGRV-GLARI 224

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R  +  P  ++D  I        L P+ HL +QSG    L  MNRR+T   +   + R+R
Sbjct: 225 RLGSLSPLAVTDEFITRAARCPSLCPHFHLSLQSGCVDTLARMNRRYTPDAFADTVHRLR 284

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           S  PD +I++D I GFPGET+++F  T+D V +IG++QA  F YS R GT  + M  QV 
Sbjct: 285 SAFPDCSITTDIIAGFPGETEEEFAQTLDFVKQIGFSQAHVFPYSRRDGTRAAAMDGQVP 344

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
           +N++  R   L       Q +F    VG+ + VL E+   E G   G +P    V + + 
Sbjct: 345 KNIRERRAHALISLCTRTQQAFRQRFVGRRVPVLFEQRA-ENGLWEGLTPQYVPVFVQAD 403

Query: 444 NHNIGDIIKVRITDVKISTLYGEL 467
               G I  V + +++ +   G L
Sbjct: 404 EDLHGAIRNVYMEEIQAAGCLGRL 427


>gi|321479315|gb|EFX90271.1| hypothetical protein DAPPUDRAFT_300126 [Daphnia pulex]
          Length = 560

 Score =  339 bits (870), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 126/458 (27%), Positives = 209/458 (45%), Gaps = 26/458 (5%)

Query: 19  DQCIVP--QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA 76
           +  I+P  Q+ +VK++GC  N  DS  M     + GY   +   +ADL +LN+C ++  A
Sbjct: 58  NGSIIPGTQKIWVKTWGCAHNNSDSEYMAGQLAAYGYSLTDEKYEADLWLLNSCTVKTPA 117

Query: 77  AEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL 136
            +   + +   R              VVVAGCV Q + +    +      ++G Q   R+
Sbjct: 118 EDHFKNEIDDGRA---------RGTPVVVAGCVPQGQPKANYLQG---LSIIGVQQIDRV 165

Query: 137 PELLERARFGK--RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCV 194
            E++E    G   R++ T    E K    + +     RK  +   + I  GC   CT+C 
Sbjct: 166 VEVVEETLKGHSVRLLGTKKDAEKKKTGGASLLLPKIRKNPLIEIIPINTGCLNQCTYCK 225

Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL 254
             + RG   S    ++V  A +    GVCEI L  ++  A  G+ +     +  +LL  L
Sbjct: 226 TKHARGELGSYPPEEIVARAIQSFQEGVCEIWLTSEDTGA-YGRDI---GSSLPELLRQL 281

Query: 255 SE-IKGLVRLRYTTSHPRDMSDCL--IKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
            + I     LR   ++P  + + L  I    +   +  +LHLPVQSGSD +L  M R + 
Sbjct: 282 VQVIPDGCMLRLGMTNPPYILEHLEAIAEILNHPRVYAFLHLPVQSGSDCVLTDMKREYC 341

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
             ++ ++++ +R   P I+I++D I GFP ET+ DF  TM+L  K  +   F  ++ PR+
Sbjct: 342 VADFERVVNFLRERVPGISIATDIICGFPTETEQDFDLTMELCSKHRFPSLFINQFFPRV 401

Query: 372 GTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR 431
           GTP   M E+V       R   L +  +       D  VGQ   VL+     +K   VG 
Sbjct: 402 GTPAYRM-ERVPTKQVKNRTKRLSELFK--SYQPYDDQVGQRQSVLVTDISHDKNYYVGH 458

Query: 432 SPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
           +     V++  + + +G +++V IT     +L  E + 
Sbjct: 459 NKEYVQVLVPMEPNYMGKMVEVLITSASKFSLMSEPLT 496


>gi|260432906|ref|ZP_05786877.1| conserved hypothetical protein [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260416734|gb|EEX09993.1| conserved hypothetical protein [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 463

 Score =  339 bits (870), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 119/457 (26%), Positives = 196/457 (42%), Gaps = 36/457 (7%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
              + S GC   + DS R+     ++GY        AD +++NTC   + A  +    +G
Sbjct: 28  TIGMVSLGCPKALVDSERILTRLRAEGYGISPDYAGADAVIVNTCGFLDSAKAESLEAIG 87

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                         +  V+V GC+  AE + I    P +  V GP  Y ++ + +  A  
Sbjct: 88  EA---------LVENGKVIVTGCLG-AEPDYIREHHPRILAVTGPHQYEQVLDAVHAA-- 135

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                      +       +   G        ++L I EGC+  C FC++P  RG   SR
Sbjct: 136 --------VPPDPNPFVDLLPASGVKLTPRHYSYLKISEGCNHKCKFCIIPDMRGKLASR 187

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE---------KCTFSDLLYSLSE 256
               V+ EA KL+D+GV E+ ++ Q+ +A  G     +         +   +DL   L +
Sbjct: 188 PAHAVLREAEKLVDSGVRELLVISQDTSA-YGLDRKYDVNPWKDREVRSHITDLARELGQ 246

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           +   VRL Y   +P       + A      L+PYL +P Q     +LK M R   A +  
Sbjct: 247 MDAWVRLHYVYPYPHVRELIPLMADAGC-NLLPYLDIPFQHAHPDVLKRMARPAAAAKTL 305

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
             I   R + PDI + S FIVG+PGET+ +F+  +D +D+    +   FKY    G   +
Sbjct: 306 DEIAAWRDICPDITLRSTFIVGYPGETEAEFQTLLDWMDEAQLDRVGCFKYENVDGARSN 365

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG--KLVGRSPW 434
           ++ + V E VK ER     +K +    +   A VGQIIEV+++    E    +    +P 
Sbjct: 366 DLPDHVPEEVKQERWERFMEKAQAISEAKLAAKVGQIIEVIVDDVDHEAATCRTKADAPE 425

Query: 435 LQSVVLNSK---NHNIGDIIKVRITDVKISTLYGELV 468
           +   +       +   GDI+ V++ +     L+G L+
Sbjct: 426 IDGNLFIDDGFEDLKPGDIVAVQVDEAGEYDLWGRLL 462


>gi|332665065|ref|YP_004447853.1| MiaB-like tRNA modifying enzyme [Haliscomenobacter hydrossis DSM
           1100]
 gi|332333879|gb|AEE50980.1| MiaB-like tRNA modifying enzyme [Haliscomenobacter hydrossis DSM
           1100]
          Length = 446

 Score =  339 bits (870), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 125/441 (28%), Positives = 207/441 (46%), Gaps = 24/441 (5%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
             P+     + GC++N  ++  +  +F   GY  V+    AD+ V+NTC + + A  K  
Sbjct: 2   ATPRTVAFYTLGCKLNYSETSSIARLFEGAGYTEVDFEQGADVYVINTCSVTDFADRKCR 61

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             + +        ++      VVV GC AQ + EEI    P V++V+G    +R+ + ++
Sbjct: 62  KVVRQA-------LRHSPQAFVVVVGCYAQLKPEEIA-EIPGVDLVLGAAEKFRILDFID 113

Query: 142 --RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
                 GK +V       +  E  + VD  ++      +FL +Q+GC+  C+FC +P  R
Sbjct: 114 TLSKAPGKGMVHAG----EVREARNFVDA-FSFGDRTRSFLKVQDGCNYKCSFCTIPQAR 168

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-------GEKCTFSDLLY 252
           G   S  +  VV  A K+ + GV EI L G N+  + G G +        ++  F DL+ 
Sbjct: 169 GASRSDKVENVVANAWKIAEMGVKEIVLTGVNIGDF-GNGTEVIEGTSPKKEAMFIDLIR 227

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
            L +++ + R R ++  P   +D +I          P+LH+P+QSG++  L+ M RR+T 
Sbjct: 228 ELDQVEAISRFRISSIEPNLCTDEIIDFVAGSQRFAPHLHMPLQSGNNTQLRQMRRRYTR 287

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
             Y   + RI+   P   I  D IVGFPGET +DF  T   +  +  +    F YS R  
Sbjct: 288 ELYTDRVARIKQQMPHACIGVDVIVGFPGETQEDFLETYHFLHDLDISYLHVFTYSERAN 347

Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS 432
           TP ++M   V  NV+ ER   L     +++  F +  +GQ   VL E H K+K  + G +
Sbjct: 348 TPAADMDGVVPVNVRRERNEMLGILSEKKRRHFYEQHLGQTRLVLFEAH-KDKNLMAGFT 406

Query: 433 PWLQSVVLNSKNHNIGDIIKV 453
                V    +   +  ++ V
Sbjct: 407 DNYIKVETPLQIELLNRVLPV 427


>gi|284162243|ref|YP_003400866.1| MiaB-like tRNA modifying enzyme [Archaeoglobus profundus DSM 5631]
 gi|284012240|gb|ADB58193.1| MiaB-like tRNA modifying enzyme [Archaeoglobus profundus DSM 5631]
          Length = 423

 Score =  339 bits (870), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 133/443 (30%), Positives = 224/443 (50%), Gaps = 27/443 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + ++++YGC MN  DS  M  +     +E V+S D+AD++V+N+C + +    K    L 
Sbjct: 3   KVYIETYGCTMNQSDSDIMRGILAKN-FELVDSADEADVVVINSCGVVDFTERK---ILK 58

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R  +LK    K      VV+AGC+ +   ++ L    + + +V P   + +  +++    
Sbjct: 59  RAESLKRQGKK------VVMAGCLPRIATKKCL---EVSDALVSPDNVHVIDLVVKSVLK 109

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G++ +  D +  DK E   I       +    A ++I EGC   C+FC   + RG   S 
Sbjct: 110 GEKPILIDRTDVDKSE---ISCVKRRLRENAIAIVSIAEGCTGRCSFCATRFARGRLRSF 166

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
               +VDE RK ++NG  EI +  Q+  A+   GLD  +    DLL ++SEI+G  R+R 
Sbjct: 167 KFESIVDEVRKCVENGFKEIQITSQDTGAY---GLDKGRYMLPDLLRAISEIEGDFRVRV 223

Query: 266 TTS---HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
                 H  +M D L+ A  + + +  ++H+PVQSG + +L+ MNR H+  ++ +++   
Sbjct: 224 GMMNPRHAVEMLDDLLNAF-ESEKMYKFIHIPVQSGDENVLRDMNRDHSVEDFIEVVKAF 282

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R    D+ +S+D IVGFP ET++ F  T +L+  +        ++S R  TP   + E +
Sbjct: 283 RRRFDDVMVSTDVIVGFPTETEEAFWRTYELIKNVEPDIVNITRFSKRPFTPAYKLKE-I 341

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
              +  ER   L +  R   +  N   +G+ + VLI K+GK   KL  R+   + VV+  
Sbjct: 342 HGWIVKERSRKLTELARSIGLKRNRRFIGKRLRVLITKNGKNGTKL-ARADSYRPVVV-- 398

Query: 443 KNHNIGDIIKVRITDVKISTLYG 465
           +  NIG+ I VRI D   + L G
Sbjct: 399 REGNIGEFINVRIVDCAFNYLVG 421


>gi|225011708|ref|ZP_03702146.1| MiaB-like tRNA modifying enzyme [Flavobacteria bacterium MS024-2A]
 gi|225004211|gb|EEG42183.1| MiaB-like tRNA modifying enzyme [Flavobacteria bacterium MS024-2A]
          Length = 450

 Score =  339 bits (870), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 127/445 (28%), Positives = 214/445 (48%), Gaps = 19/445 (4%)

Query: 19  DQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAE 78
           DQ I   R    + GC++N  +S  +   F  + Y+RV+    A++ V+NTC + E A +
Sbjct: 12  DQSIP--RVAFHTLGCKLNFSESATIARDFDDKNYKRVDFNSPAEVYVINTCSVTENADK 69

Query: 79  KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPE 138
                  R++ L    +       V   GC AQ + EEI  +   V++V+G    + L E
Sbjct: 70  -------RLKGLVQKALSHNPKGFVAAIGCYAQLQPEEI-SKLDGVDLVLGATEKFNLIE 121

Query: 139 LLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
            +      K+          + E  +     Y+      AFL +Q+GCD  CT+C +P  
Sbjct: 122 YVNDLSKNKQT----EIHSCEIETANFYKSSYSTSDRTRAFLKVQDGCDYKCTYCTIPQA 177

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK---CTFSDLLYSLS 255
           RG+  S +L  +++  +K+ D+G+ EI L G N+    GKG  G K    TF +L+ ++ 
Sbjct: 178 RGVSRSDTLENIINNVKKIGDSGLREIVLTGVNIG-DYGKGEFGNKKHQHTFLELINAID 236

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
            +K + R+R ++  P  ++D +I      +  +P+ H+P+QSGSDRILKSM RR+    Y
Sbjct: 237 MVKSIDRIRISSIEPNLLNDDIIDFVSGSNRFVPHFHIPLQSGSDRILKSMRRRYLTPLY 296

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
            Q + RI+   P+  I  D IVG+PGET++DF  +   +  +  +    F YS R  T  
Sbjct: 297 LQRVARIKEAMPNACIGVDVIVGYPGETEEDFLTSYRFLADLDVSYLHVFTYSERPNTEA 356

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWL 435
             + E V   V+ +R   L+    +++ +F ++ +G+   VL E   K+ G   G +   
Sbjct: 357 LEIKEVVPHAVRNKRSKMLRALSVKKRRAFYESQLGKTYSVLFEGENKK-GYCTGFTENY 415

Query: 436 QSVVLNSKNHNIGDIIKVRITDVKI 460
             V        +  + +V +  V  
Sbjct: 416 VKVRTPWNPELVNTLKEVVLDSVDS 440


>gi|330826148|ref|YP_004389451.1| 30S ribosomal protein S12 methylthiotransferase rimO
           [Alicycliphilus denitrificans K601]
 gi|329311520|gb|AEB85935.1| Ribosomal protein S12 methylthiotransferase rimO [Alicycliphilus
           denitrificans K601]
          Length = 463

 Score =  339 bits (869), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 120/482 (24%), Positives = 203/482 (42%), Gaps = 46/482 (9%)

Query: 14  VSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIR 73
           +S+ +     P+  FV S GC  N+ DS  +     ++GYE   +   ADL+++NTC   
Sbjct: 1   MSEALSPTKTPKIGFV-SLGCPKNLTDSELILTQLSAEGYETSKTFQGADLVIVNTCGFI 59

Query: 74  EKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEE----ILRRSPIVNVVVG 129
           + A  +    +G              +  V+V GC+     +     +    P V  V G
Sbjct: 60  DDAVRESLDTIGEALA---------DNGKVIVTGCLGARADDGGGNLVKGVHPNVLAVTG 110

Query: 130 PQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKF 189
           P     + E + +          D       E       G        A+L I EGC+  
Sbjct: 111 PHAAQEVMEHVHQHLPKPHDPFLDLVPGTFGE------AGIKLTPRHYAYLKISEGCNHR 164

Query: 190 CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE 243
           CTFC++P  RG  +SR +  V++EAR L + GV E+ ++ Q+ +A+      R    DG+
Sbjct: 165 CTFCIIPSMRGDLVSRPIGDVLNEARALFEGGVKELLVVSQDTSAYGVDVKYRTGFWDGK 224

Query: 244 --KCTFSDLLYSLSEI----KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQS 297
             +    +L+ +L  I       VRL Y   +P       +       +++PYL +P Q 
Sbjct: 225 PVRTRLLELVQTLGAIARPYGAWVRLHYVYPYPSVDDIIPLM---QEGLVLPYLDVPFQH 281

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
               +LK M R  +  +  + I R R + P++ + S FI GFPGET+++F   +  + + 
Sbjct: 282 SHPDVLKRMKRPASGEKNLERIQRWREMCPELVVRSTFIAGFPGETEEEFEHLLQFLREA 341

Query: 358 GYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVL 417
              +A  F YS   G   +++   +   ++ ER         E   +     VGQ ++VL
Sbjct: 342 QIDRAGCFAYSNVRGAAANDLPGMLPMELREERRARFMAVAEEVSTARLQRRVGQTLQVL 401

Query: 418 IEK-----HGKEKGKLVGRSPWLQSVVL------NSKNHNIGDIIKVRITDVKISTLYGE 466
           ++K          G+    +P +  +V        SK + +GD +K RI   +   L G 
Sbjct: 402 VDKAVGLGKKGGVGRSWADAPEIDGLVHLLPPEKISKTYKVGDFVKARIVGTQGHDLVGV 461

Query: 467 LV 468
            V
Sbjct: 462 PV 463


>gi|38345374|emb|CAD40910.2| OSJNBa0088K19.13 [Oryza sativa Japonica Group]
          Length = 626

 Score =  339 bits (869), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 121/462 (26%), Positives = 212/462 (45%), Gaps = 24/462 (5%)

Query: 9   GVAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLN 68
            VA    Q   +    Q  +VK++GC  N  DS  M     + GY      + ADL ++N
Sbjct: 42  RVAQTRPQPEARIPGTQTIYVKTFGCSHNQSDSEYMSGQLSAFGYAITEEPEGADLWLIN 101

Query: 69  TCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVV 128
           TC ++  +   + + + + ++             +VVAGCV Q   +  L+    ++ V+
Sbjct: 102 TCTVKNPSQSAMTTLISKCKSANKP---------LVVAGCVPQGSRD--LKELEGIS-VI 149

Query: 129 GPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
           G Q   R+ E++E    G  V             L  +D    RK      L I  GC  
Sbjct: 150 GVQQIDRVVEVVEETLKGHEVRLLSRKT------LPSLDLPKVRKNKFIEILPINVGCLG 203

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS 248
            CT+C   + RG   S ++  +VD  + ++  GV EI L  ++  A  G+ +        
Sbjct: 204 ACTYCKTKHARGHLGSYTIESLVDRVKIVVSEGVREIWLSSEDTGA-YGRDIGTNLPNLL 262

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCL--IKAHGDLDVLMPYLHLPVQSGSDRILKSM 306
           + + +         LR   ++P  + + L  I +      +  +LH+PVQSGSD +L +M
Sbjct: 263 NGIAAELPADRSTMLRIGMTNPPFILEHLKEIASVLCHPCVYSFLHVPVQSGSDAVLTAM 322

Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
           NR +T  E+R+++D +  + P + I++D I GFPGETD+DF  T++LV +  + Q    +
Sbjct: 323 NREYTVSEFRRVVDTLCELVPGMQIATDIICGFPGETDEDFSQTVNLVKQYLFPQVHISQ 382

Query: 367 YSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG 426
           + PR GTP + M ++V      +R   L      +  S      G++  + I +   +  
Sbjct: 383 FYPRPGTPAARM-KKVPSVEVKKRSRELTSVF--ESFSPYQGMEGKVERIWITEIATDGV 439

Query: 427 KLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            LVG +     V++ + +  +G    V+IT V   +++GE++
Sbjct: 440 HLVGHTKGYIQVLVIAPDSMLGTSADVKITSVGRWSVFGEVI 481


>gi|332527184|ref|ZP_08403257.1| ribosomal protein S12 methylthiotransferase [Rubrivivax
           benzoatilyticus JA2]
 gi|332111608|gb|EGJ11590.1| ribosomal protein S12 methylthiotransferase [Rubrivivax
           benzoatilyticus JA2]
          Length = 462

 Score =  339 bits (869), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 122/473 (25%), Positives = 205/473 (43%), Gaps = 42/473 (8%)

Query: 20  QCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEK 79
           Q  VP      S GC   + DS  +     ++GY    S   ADL+++NTC   + A ++
Sbjct: 2   QETVP-TVAFASLGCPKALTDSELILTQLAAEGYRTSKSFAGADLVIVNTCGFIDDAVKE 60

Query: 80  VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEE----ILRRSPIVNVVVGPQTYYR 135
               +G              +  V+V GC+    G++    + +  P V  V GP     
Sbjct: 61  SLDTIGEALA---------ENGRVIVTGCLGARAGDDGGNMVQQVHPKVLAVTGPHATQE 111

Query: 136 LPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
           + + + R          D   E + E     + G        A+L I EGC+  C+FC++
Sbjct: 112 VMDAVHRHVPKPHDPFVDLVPEVRAEF--RGEAGIKLTPRHYAYLKISEGCNHRCSFCII 169

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTF 247
           P  RG  +SR + +V+ EA+ L +NGV E+ ++ Q+  A+      R    DG   K  F
Sbjct: 170 PTMRGDLVSRPVGEVLSEAKALFENGVKELLVVSQDTGAYGVDVQYRTGFWDGRPVKTRF 229

Query: 248 SDLLYSLSEI----KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
           +DL   L+ +       VRL Y   +P       + A G    ++PYL +P Q     +L
Sbjct: 230 ADLCEQLARLAEAHGAWVRLHYVYPYPHVDDVLPLMAEG---RILPYLDVPFQHAHPDVL 286

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           K M R  +     + + R R + P++ + S FI GFPGET+ +F+  +D V +    +A 
Sbjct: 287 KRMKRPASGERNLERLARWRELCPELVVRSTFIAGFPGETEAEFQTLLDFVAEAQIDRAG 346

Query: 364 SFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE---K 420
            F YSP  G P + +   + + V+ ER     +      V+     VGQ ++VL++    
Sbjct: 347 CFAYSPVAGAPANELPGALPDAVREERRARFMEVAEAVSVAKLQRRVGQTMQVLVDHAPA 406

Query: 421 HGKEK--GKLVGRSPWLQSVV------LNSKNHNIGDIIKVRITDVKISTLYG 465
            G++   G+    +P +   V        S+   +G+ ++ RI   +   L  
Sbjct: 407 LGRKGGVGRSYADAPEIDGSVRLLPPQKASRTLKVGEFVRARIVAAEGHDLIA 459


>gi|291458549|ref|ZP_06597939.1| tRNA modification enzyme, MiaB family [Oribacterium sp. oral taxon
           078 str. F0262]
 gi|291419082|gb|EFE92801.1| tRNA modification enzyme, MiaB family [Oribacterium sp. oral taxon
           078 str. F0262]
          Length = 460

 Score =  339 bits (869), Expect = 7e-91,   Method: Composition-based stats.
 Identities = 135/445 (30%), Positives = 218/445 (48%), Gaps = 32/445 (7%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
             V + GC++N Y++  M     + G   V   + AD+ ++NTC +   A +K    L R
Sbjct: 8   VAVHNLGCKVNAYEAEAMLRELENAGARIVPWEERADIYLINTCSVTNIADKKSRQMLHR 67

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
            R           D +VV  GC  QA  EE+L     V++++G     R+ ELL     G
Sbjct: 68  ARAK-------NPDAIVVGTGCYVQARKEELLS-DGSVDLLIGNAGKGRIAELLSDYLRG 119

Query: 147 KR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            R  V  D      +E  S       R     AFL +Q+GC +FC++C++PY RG   SR
Sbjct: 120 DRTPVCFDLRSVHGYEEFS----AGGRTERARAFLKVQDGCGQFCSYCIIPYLRGEIRSR 175

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC------------TFSDLLYS 253
           +L  ++ E R L + G  EI L G +++++  +     +             +   L+  
Sbjct: 176 ALPDILREVRALSEGGYREIVLTGIHLSSYGMESCGDRERRERAFNAALPSESLLSLIRE 235

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
           ++ + G+ R+R  +  PR +S   ++A   +    P+ HL +QSGSDR L++MNR + + 
Sbjct: 236 VASVSGIERVRLGSLEPRIISRDFVRALSGIPEFCPHFHLSLQSGSDRTLRAMNRHYDSA 295

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
            +R+    IR   PD A+++D IVGFPGET++DF  ++  + +IG+ +   FKYS R GT
Sbjct: 296 AFRESAKIIRESFPDAALTTDVIVGFPGETEEDFSESLRFISEIGFYELHVFKYSRRRGT 355

Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK--LVGR 431
               M  QV E VKAER   L    RE+   F    +G+   VL+E+  + +G+  L G 
Sbjct: 356 AAERMKGQVPEKVKAERSARLIALDRERSAEFRRRFLGRRESVLLEERIEWEGRGYLAGF 415

Query: 432 SPWLQSVVLN-----SKNHNIGDII 451
           +      ++       +   +G+II
Sbjct: 416 NREYVRFLIPCGEAEGEPGKVGEII 440


>gi|217076998|ref|YP_002334714.1| Fe-S oxidoreductase [Thermosipho africanus TCF52B]
 gi|217036851|gb|ACJ75373.1| Fe-S oxidoreductase [Thermosipho africanus TCF52B]
          Length = 429

 Score =  339 bits (869), Expect = 8e-91,   Method: Composition-based stats.
 Identities = 131/436 (30%), Positives = 224/436 (51%), Gaps = 24/436 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R  V +YGC++N Y+S  M +   ++GY  VN   ++D+ V+N+C +  +A  K+   + 
Sbjct: 2   RVSVLTYGCKLNQYESELMAEKLENEGYIVVNEEVESDVFVINSCVVTNEATRKIKQQIR 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R++       ++     VVV GC +Q   EE+      V++V+G      +   L  +  
Sbjct: 62  RLK-------RKFPGAKVVVTGCYSQLGFEEL--EKEGVDLVLGNNEKKYIDRYLGESGI 112

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG-IEIS 204
               VD  Y   +  E   +      R R   AF+ +Q+GC   C++C + + RG    S
Sbjct: 113 ---FVDKAYWNRNSLEDEFVFSSLAERTR---AFIKVQDGCTNTCSYCAIRFARGNKIRS 166

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           + +  VV E  +L++    EI + G N+    GK +D    +  +LL SL +IKG  R+R
Sbjct: 167 KPVDLVVSEVLRLVNKDYKEIVITGLNLG-KFGKDID---SSLHELLRSLVKIKGDFRIR 222

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
            ++ +P D+ + LI   G  + +  +LH+P+QSGS  +LK+M R +T  +Y +++D IR 
Sbjct: 223 LSSINPEDLDEELISLIGAEEKICNHLHIPLQSGSTDVLKNMRRNYTQDDYLRVVDSIRK 282

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           V P+ +I++D +VGFPGE++ DF  T+ +V ++ +++  +F+YS R  T  S M ++V  
Sbjct: 283 VDPNFSITTDIMVGFPGESEKDFEETLKVVREVLFSKVHAFRYSDRPNTLASKMPKKVPG 342

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
           NVK ER+  L+K        +    VG+  +VLIE    +     G   +   V+  + +
Sbjct: 343 NVKKERVEVLEKLSAAVAKDYRKRLVGRKAKVLIE--SYKNKIYSGYDEYY--VLHETSH 398

Query: 445 HNIGDIIKVRITDVKI 460
              G I  V I  V  
Sbjct: 399 GEFGKIENVTIQAVTD 414


>gi|255525323|ref|ZP_05392263.1| MiaB-like tRNA modifying enzyme [Clostridium carboxidivorans P7]
 gi|296188191|ref|ZP_06856583.1| MiaB-like tRNA modifying enzyme [Clostridium carboxidivorans P7]
 gi|255510995|gb|EET87295.1| MiaB-like tRNA modifying enzyme [Clostridium carboxidivorans P7]
 gi|296047317|gb|EFG86759.1| MiaB-like tRNA modifying enzyme [Clostridium carboxidivorans P7]
          Length = 436

 Score =  338 bits (868), Expect = 8e-91,   Method: Composition-based stats.
 Identities = 138/444 (31%), Positives = 226/444 (50%), Gaps = 13/444 (2%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    + GC++N Y++  M + F   GYE V   + AD+ V+NTC +     +K    + 
Sbjct: 2   KVAFATLGCRVNKYETEAMVEKFIKDGYEVVPFEEYADVYVINTCTVTNMGDKKSRQMIH 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R R       +E  D ++ V GC +Q   EE+  +   V+VV+G +    +   + R R 
Sbjct: 62  RAR-------RENEDAVISVVGCYSQIASEEV-SQIDGVDVVLGTRNKGEIVYWVNRVRE 113

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            ++ V     V        +    Y  K    AFL IQ+GC++FC++C++P+ RG   S+
Sbjct: 114 ERKQVVEVKEVMKNNAFEELNIESYQDK--TRAFLKIQDGCNRFCSYCLIPFARGAVCSK 171

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
              +++ E ++L  +G  EI L G +  A  G  L+ E C+   +L  + +I G+ R+R 
Sbjct: 172 PPEKIISEVKELAAHGFKEIILSGIHT-ASYGVDLE-EDCSLLSVLEQIDKIPGIERVRI 229

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
            +  P+  ++ +I+    L  L P+ HL +QSG +  LK MNRR+TA EY +I++ +RS 
Sbjct: 230 GSIDPQFFTEGVIERISVLKKLCPHFHLSLQSGCNETLKRMNRRYTAGEYEKIVEDLRSN 289

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
             D++I++D IVGFP ET+++F  T + + +I  ++   FKYSPR GT  + M   VD N
Sbjct: 290 IDDVSITTDIIVGFPEETEEEFNTTYEFLKRIKLSKIHVFKYSPRKGTKAAEMKNSVDGN 349

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKH-GKEKGKLVGRSPWLQSVVLNSKN 444
           +K ER   L    +  +  F    +G+ +EVL E+     +    G +P    VV  S+ 
Sbjct: 350 IKDERSSKLIALDKVMEEEFMKKFLGRNMEVLYEQKCSNSQDLYEGYTPNYIKVVSKSEK 409

Query: 445 HNIGDIIKVRITDVKISTLYGELV 468
              G I    I   K   L G L+
Sbjct: 410 DISGSIKNTEIVQTKNGILEGNLL 433


>gi|115950365|ref|XP_001188890.1| PREDICTED: similar to CDK5 regulatory subunit associated protein
           1-like 1 [Strongylocentrotus purpuratus]
          Length = 660

 Score =  338 bits (868), Expect = 8e-91,   Method: Composition-based stats.
 Identities = 119/457 (26%), Positives = 200/457 (43%), Gaps = 19/457 (4%)

Query: 15  SQIVDQCIVP--QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHI 72
             I    I+P  Q+ FVK++GC  N  D   M     S GY   +    AD+ +LN+C +
Sbjct: 49  EDIKADSIIPGTQKVFVKTWGCSHNNSDGEYMAGQLASYGYSITDDSSGADVWLLNSCTV 108

Query: 73  REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT 132
           +  A +   + + + +    +         +V+AGCV Q + +    +   V   +G Q 
Sbjct: 109 KNPAEDHFRNEIQKAQQQGKA---------LVLAGCVPQGQPKAKYMQGVSV---IGVQQ 156

Query: 133 YYRLPELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCT 191
             R+ E++E    G  V +        K    + +D    R+  +   L I  GC   CT
Sbjct: 157 IDRVVEVVEETVKGNTVRLFGQKKQGGKKIGGASLDLPKIRRNPLVEILAINTGCLNQCT 216

Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLL 251
           +C   + RG   S    ++V  A++  D GVCEI L  ++  A  G  +        D L
Sbjct: 217 YCKTKHARGELGSYPPEELVARAKQSFDEGVCEIWLTSEDTGA-YGIDIGVTIVELLDQL 275

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
             +     ++R+  T           I        +  +LH+P+QSGSD +L  M R + 
Sbjct: 276 VEVIPEGCMMRIGMTNPPYILDHLEGIARILRHPRVYSFLHIPIQSGSDSVLMDMKREYC 335

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
             ++R+I++ +R   P + I++D I GFP E++ DF  T+ L+++  +   F  +Y PR 
Sbjct: 336 TADFRKIVEFLRKEVPRVTIATDIICGFPHESEKDFEETLSLIEEFKFPSVFINQYFPRP 395

Query: 372 GTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR 431
           GTP +    QV    K  R   L      +     D  VG+  +VL+ +   +K  LV  
Sbjct: 396 GTPAAKWP-QVPAQEKKRRTKALTVLF--KSYQTYDDKVGERFDVLVTEVSHDKQYLVAH 452

Query: 432 SPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           + +   V++      +G I+KV I  V    L G ++
Sbjct: 453 NKFYDQVLVPHNKEYLGRILKVEIESVGKHFLMGRVL 489


>gi|313157725|gb|EFR57136.1| tRNA methylthiotransferase YqeV [Alistipes sp. HGB5]
          Length = 432

 Score =  338 bits (868), Expect = 8e-91,   Method: Composition-based stats.
 Identities = 122/445 (27%), Positives = 206/445 (46%), Gaps = 18/445 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +R    + GC++N  +S  +   F   G+ RV    +AD+ V+N+C + E A +K  + +
Sbjct: 4   RRVNFHTLGCKLNFSESSTLAREFERGGFVRVAPDAEADICVINSCSVTEHADKKCRNLI 63

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            ++        +     ++ V GC AQ + +EI     +  V+           ++E + 
Sbjct: 64  RKLH-------RRNPGAIIAVTGCYAQLKPQEIAAIEGVDIVLSNNDKGMLYKRVVELSG 116

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G+  +          E L+     ++      AFL +Q+GCD  C +C + Y RG   +
Sbjct: 117 KGRAQI-----YSCDTESLTSFFAAFSSGDRTRAFLKVQDGCDYKCAYCTIHYARGGSRN 171

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
             ++ +V EAR++   G  EI + G N     G         F DLL +L+E++G+ R R
Sbjct: 172 MPIADLVAEARQIAAAGQKEIVITGINT----GDFGRTTGERFIDLLRALNEVEGIERYR 227

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
            ++  P  ++D +I           + H+P+QSGSD+IL  M RR+T   +   I  +R+
Sbjct: 228 ISSIEPNLLTDEIIAFCAASPKFQHHFHIPLQSGSDKILGLMRRRYTTARFADRIAAVRA 287

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           + PD  I  D IVGFPGET++DFR T D ++ +  A    F +S R GTP  +M  +V  
Sbjct: 288 LMPDAFIGIDVIVGFPGETEEDFRTTYDFLEGLKPAFLHIFPFSERPGTPAVDMPGKVQP 347

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
           +V   R+  L++       +F    VG    VL E   +  G + G +   + V      
Sbjct: 348 SVATRRVAELEELCGRLHGAFCAKAVGSEDTVLFESTLR-GGMMFGYTGSYRRVKAPYDR 406

Query: 445 HNIGDIIKVRITDVKI-STLYGELV 468
             I  I +VR   +     L G+++
Sbjct: 407 TRINAICRVRFGAMDESHDLMGDIL 431


>gi|163868318|ref|YP_001609527.1| ribosomal protein S12 methylthiotransferase [Bartonella tribocorum
           CIP 105476]
 gi|238065292|sp|A9IUA4|RIMO_BART1 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|161017974|emb|CAK01532.1| conserved hypothetical protein [Bartonella tribocorum CIP 105476]
          Length = 437

 Score =  338 bits (868), Expect = 9e-91,   Method: Composition-based stats.
 Identities = 129/460 (28%), Positives = 211/460 (45%), Gaps = 36/460 (7%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           +V  R    S GC   + DS R+     S+GYE       AD++++NTC   + A ++  
Sbjct: 1   MVAPRISFVSLGCPKALVDSERIITSLRSEGYEISRQHQGADVVIVNTCGFLDSARKESL 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           + +     LK +         V+V GC+  A+ + I +  P V  + GPQ Y  + E + 
Sbjct: 61  ANIDEA--LKENGK-------VIVTGCLG-ADPDVIRQTYPNVLAITGPQAYESVIEAVH 110

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
            A            + D F  L    G     R   A+L I EGC   C+FC++P  RG 
Sbjct: 111 TA---------IPPIHDPFLDLVPPQGIRLTPRHY-AYLKISEGCSNRCSFCIIPTLRGD 160

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE--------KCTFSDLLYS 253
             SR +S V+ EA KL+  GV E+ ++ Q+ +A+       E        K  F DL   
Sbjct: 161 LTSRPISDVLREAEKLVQAGVKELLVISQDTSAYGIDLKYLENSWKDRTIKTKFFDLCRE 220

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
           L ++   VR+ Y   +P      +I+       ++PYL +P Q  S  +L+ M R     
Sbjct: 221 LGDMGIWVRMHYVYPYPHVD--EVIELMAA-KKILPYLDIPFQHASPTVLRHMKRPALME 277

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
           +  + I++ R + PD+ + S FIVGFPGET++DF   ++ ++     +A  FKY    G 
Sbjct: 278 KTNRRIEKWRKICPDLTLRSTFIVGFPGETNEDFNMLLEWLEDAKIERAGCFKYEEVKGA 337

Query: 374 PGSNM-LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE--KGKLVG 430
             +++ LE + E+VK  R      K ++         +G+ ++VLI++   +  KG+   
Sbjct: 338 VANDLGLENIPEDVKENRWHRFMAKQQQISTHLLKKKIGKRLQVLIDESQGKVAKGRSQY 397

Query: 431 RSPWLQSVVLNSK--NHNIGDIIKVRITDVKISTLYGELV 468
            +P +  VV  S      +G+ + V+I       LYG  V
Sbjct: 398 DAPEIDGVVHISSRRPLRVGEFVTVKIEQSDAYDLYGIAV 437


>gi|312136430|ref|YP_004003767.1| RNA modification enzyme, miab family [Methanothermus fervidus DSM
           2088]
 gi|311224149|gb|ADP77005.1| RNA modification enzyme, MiaB family [Methanothermus fervidus DSM
           2088]
          Length = 427

 Score =  338 bits (868), Expect = 9e-91,   Method: Composition-based stats.
 Identities = 123/445 (27%), Positives = 234/445 (52%), Gaps = 24/445 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + ++++YGC  N  DS  +  +   +  + V+S+D+AD+I+LNTC++++    K+ + + 
Sbjct: 2   KVYIETYGCTYNKADSQIIAGILEKENIKVVDSIDEADVIILNTCYVKQPTEHKIINRIR 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            ++N             ++VAGC+ + + E++ + +P  +  +GP   ++ PE++     
Sbjct: 62  ELQN-------TYKSKELIVAGCMVEIDPEKLKKIAPE-SAWLGPHKLHKAPEVV----- 108

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            K V++ +       +    V+    R       + I EGC   C++C   + RG   S 
Sbjct: 109 -KSVINGNKKKVYGKDSKIKVEMPKKRFNSHIHIVQICEGCLGNCSYCCTRFARGRLYSY 167

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            L  +V + +K I++G  EI L  Q+  A  G+ +    C    L+  ++ + G  ++R 
Sbjct: 168 PLDSIVKDVKKAIEDGCVEIQLTAQDTAA-YGRDI---GCDLPTLINKITSLDGKFKIRV 223

Query: 266 TTSHPRDMSDCLIKAHG--DLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
              HP+++   L +     D + +  +LHLPVQSGSD++L+ MNR +   ++++I+ + R
Sbjct: 224 GMMHPKNVKKILDELVDAYDSEKIYKFLHLPVQSGSDKVLRDMNRGYKVKDFKKIVRKFR 283

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              P+I+I++D IVGFP E+ +DF+ T +L+++I      S +Y+ R G   S + +++D
Sbjct: 284 KKIPEISIATDIIVGFPTESREDFKKTCELLNEIKPNFIHSSRYAHRPGAKSSKL-DELD 342

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
            N   ER   +++   +     N   VG   +VLI + GK+ G  +GR+     V++NS 
Sbjct: 343 HNEVKERSRIIEEIKNKIMREENKKLVGTEQKVLIVEKGKKGG-YIGRTSSYIPVIVNSG 401

Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468
               G+IIKV+I +   + L G+ V
Sbjct: 402 --KPGEIIKVKIKEATSTYLKGDAV 424


>gi|260427804|ref|ZP_05781783.1| conserved hypothetical protein [Citreicella sp. SE45]
 gi|260422296|gb|EEX15547.1| conserved hypothetical protein [Citreicella sp. SE45]
          Length = 454

 Score =  338 bits (868), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 121/449 (26%), Positives = 194/449 (43%), Gaps = 29/449 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
              + S GC   + DS R+     ++GY        AD +++NTC   + A  +    +G
Sbjct: 29  TIGMVSLGCPKALVDSERILTRLRAEGYGISPDYAGADAVIVNTCGFLDSAKAESLEAIG 88

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                         +  V+V GC+  AE E I    P V  V GP  Y ++ + +  A  
Sbjct: 89  EA---------LSENGRVIVTGCLG-AEPEYITGVHPRVLAVTGPHQYEQVLDAVHGA-- 136

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                       D F  L    GG        ++L I EGC+  C FC++P  RG   SR
Sbjct: 137 -------VPPSPDPFVDLLPA-GGVKLTPRHYSYLKISEGCNHACKFCIIPDMRGKLASR 188

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLR 264
               V+ EA KL++ GV E+ ++ Q+ +A+     D  EK     L   L E+   VR+ 
Sbjct: 189 PHRAVLREAEKLVEAGVKELLVISQDTSAYGTDWKDRTEKAPILSLARDLGELGAWVRMH 248

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           Y   +P      LI    +   ++PYL +P Q      LK M R   A      I   R+
Sbjct: 249 YVYPYPHV--RELIPLMAE-GKVLPYLDIPFQHAHPDTLKRMARPAAAARTLDEIAAWRA 305

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             P+I + S FIVG+PGET+++F+  +D +D+    +   F+Y    G   + + + V  
Sbjct: 306 ACPEIVLRSTFIVGYPGETEEEFQTLLDWMDEARLDRVGCFQYENVDGARSNALPDHVPA 365

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE--KHGKEKGKLVGRSPWLQSVVLNS 442
            +K ER     +K ++   +   A VGQ IEV+++  +      +    +P +   +   
Sbjct: 366 ELKQERWDRFMEKAQQISEANLAAKVGQRIEVIVDLVEDDAATCRTKADAPEIDGNLFID 425

Query: 443 KNHN---IGDIIKVRITDVKISTLYGELV 468
           + H     GDI+ V + +     L+G LV
Sbjct: 426 EGHEKLTPGDIVTVEVDEAGEYDLWGRLV 454


>gi|94968239|ref|YP_590287.1| MiaB-like tRNA modifying enzyme [Candidatus Koribacter versatilis
           Ellin345]
 gi|94550289|gb|ABF40213.1| MiaB-like tRNA modifying enzyme [Candidatus Koribacter versatilis
           Ellin345]
          Length = 495

 Score =  338 bits (867), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 137/458 (29%), Positives = 221/458 (48%), Gaps = 30/458 (6%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           FFV+++GC+    D   +E     +G  R +S  DA+++VLNTC +   A +   + + R
Sbjct: 41  FFVENFGCRATQADGAAIERQLLEKGLARGSSAIDAEVVVLNTCTVTASADQDARAAIRR 100

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE----- 141
           I+       +   +  ++V GC AQ   EEI  R   V++VVG    + LP L       
Sbjct: 101 IK-------RGNPEARIIVTGCYAQRAPEEI-SRIEGVSLVVGNSHKHALPTLAANLAPK 152

Query: 142 ------------RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKF 189
                        A     VV  D     +     + D     +R     L IQ+GC+  
Sbjct: 153 GFVSVASIGVGTAATEAAPVVIGDIFAHTELMAAPVFDSESAAER-TRPNLKIQDGCNNR 211

Query: 190 CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSD 249
           C+FCV+PY RG   S ++  V+ E   L++ G  EI L G N+  W G  L   +  F +
Sbjct: 212 CSFCVIPYVRGKSRSLTMDSVLHEVDSLVEAGYKEIVLSGINLGRW-GNDL-RPRVRFEE 269

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
           L+ ++ E   + ++R ++  P D S+ LI    +   +  + H P+QSGSDRIL+ M+RR
Sbjct: 270 LVRNIVENTAIPKVRISSVEPMDWSNELIALVAESPKICKHAHAPLQSGSDRILRKMHRR 329

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369
           +  + Y   ++RIR+  P  AI +D +VGFPGETD+ F  T   ++ + +     F YS 
Sbjct: 330 YRPWHYADRLERIRTAMPQAAIGADVMVGFPGETDEHFEETRSFIESLPFTYLHVFTYSS 389

Query: 370 RLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV 429
           R GTP + M EQV   V  ER   L+  + E++  F ++ VG+ IE  +    +  G   
Sbjct: 390 RPGTPSAAMAEQVPVYVARERNKVLRDLIAEKKHGFMESLVGKEIEA-VTLTNQRDGMTE 448

Query: 430 GRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
             +   Q  ++ +  H    +++VR+  V   +L G +
Sbjct: 449 ALTDNYQKAMI-AGEHTSNQLVRVRLDRVDGESLLGVI 485


>gi|115618009|ref|XP_792404.2| PREDICTED: similar to CDK5 regulatory subunit associated protein
           1-like 1 [Strongylocentrotus purpuratus]
          Length = 556

 Score =  338 bits (867), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 119/457 (26%), Positives = 200/457 (43%), Gaps = 19/457 (4%)

Query: 15  SQIVDQCIVP--QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHI 72
             I    I+P  Q+ FVK++GC  N  D   M     S GY   +    AD+ +LN+C +
Sbjct: 49  EDIKADSIIPGTQKVFVKTWGCSHNNSDGEYMAGQLASYGYSITDDSSGADVWLLNSCTV 108

Query: 73  REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT 132
           +  A +   + + + +    +         +V+AGCV Q + +    +   V   +G Q 
Sbjct: 109 KNPAEDHFRNEIQKAQQQGKA---------LVLAGCVPQGQPKAKYMQGVSV---IGVQQ 156

Query: 133 YYRLPELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCT 191
             R+ E++E    G  V +        K    + +D    R+  +   L I  GC   CT
Sbjct: 157 IDRVVEVVEETVKGNTVRLFGQKKQGGKKIGGASLDLPKIRRNPLVEILAINTGCLNQCT 216

Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLL 251
           +C   + RG   S    ++V  A++  D GVCEI L  ++  A  G  +        D L
Sbjct: 217 YCKTKHARGELGSYPPEELVARAKQSFDEGVCEIWLTSEDTGA-YGIDIGVTIVELLDQL 275

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
             +     ++R+  T           I        +  +LH+P+QSGSD +L  M R + 
Sbjct: 276 VEVIPEGCMMRIGMTNPPYILDHLEGIARILRHPRVYSFLHIPIQSGSDSVLMDMKREYC 335

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
             ++R+I++ +R   P + I++D I GFP E++ DF  T+ L+++  +   F  +Y PR 
Sbjct: 336 TADFRKIVEFLRKEVPRVTIATDIICGFPHESEKDFEETLSLIEEFKFPSVFINQYFPRP 395

Query: 372 GTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR 431
           GTP +    QV    K  R   L      +     D  VG+  +VL+ +   +K  LV  
Sbjct: 396 GTPAAKWP-QVPAQEKKRRTKALTVLF--KSYQTYDDKVGERFDVLVTEVSHDKQYLVAH 452

Query: 432 SPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           + +   V++      +G I+KV I  V    L G ++
Sbjct: 453 NKFYDQVLVPHNKEYLGRILKVEIESVGKHFLMGRVL 489


>gi|254511063|ref|ZP_05123130.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Rhodobacteraceae
           bacterium KLH11]
 gi|221534774|gb|EEE37762.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Rhodobacteraceae
           bacterium KLH11]
          Length = 463

 Score =  338 bits (867), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 114/463 (24%), Positives = 195/463 (42%), Gaps = 40/463 (8%)

Query: 23  VPQ----RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAE 78
           +P+       + S GC   + DS R+     ++GY        AD +++NTC   + A  
Sbjct: 21  MPRQGQPTLGMVSLGCPKALVDSERILTRLRAEGYGISPDYAGADAVIVNTCGFLDSAKA 80

Query: 79  KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPE 138
           +    +G              +  V+V GC+  AE + I    P +  V GP  Y ++ +
Sbjct: 81  ESLEAIGEA---------LVENGKVIVTGCLG-AEPDYIREHHPRILAVTGPHQYEQVLD 130

Query: 139 LLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
            +  A             +       +   G        ++L I EGC+  C FC++P  
Sbjct: 131 AVHAA----------VPPDPNPYVDLLPASGVKLTPRHYSYLKISEGCNHKCKFCIIPDM 180

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE---------KCTFSD 249
           RG   SR    V+ EA KL+DNGV E+ ++ Q+ +A  G     +         +   +D
Sbjct: 181 RGKLASRPAHAVLREAEKLVDNGVRELLVISQDTSA-YGLDRKYDMNPWRDREVRSHITD 239

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
           L   L +    VRL Y   +P       + A      ++PYL +P Q     +LK M R 
Sbjct: 240 LARELGQFDAWVRLHYVYPYPHVRELIPLMADAGC-NVLPYLDIPFQHAHPDVLKRMARP 298

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369
               +    I   R+  PDI + S FIVG+PGET+ +F+  +D +D+    +   F+Y  
Sbjct: 299 AAGAKTLDEIAAWRATCPDITLRSTFIVGYPGETEAEFQTLLDWMDEAQLDRVGCFQYEN 358

Query: 370 RLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG--K 427
             G   +++ + V   VK +R     +K +    +  +A VGQ++EV++++   E    +
Sbjct: 359 VDGARSNDLPDHVPAEVKQDRWERFMEKAQAISEAKLEAKVGQVLEVIVDEVDSEAATCR 418

Query: 428 LVGRSPWLQSVVLNS---KNHNIGDIIKVRITDVKISTLYGEL 467
               +P +   +      +    GDI  V + +     L+G L
Sbjct: 419 TKADAPEIDGNLFIDEGFEGLKPGDIATVEVDEAGEYDLWGRL 461


>gi|331091338|ref|ZP_08340178.1| MiaB-like tRNA modifying enzyme [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330404499|gb|EGG84043.1| MiaB-like tRNA modifying enzyme [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 449

 Score =  338 bits (867), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 131/439 (29%), Positives = 234/439 (53%), Gaps = 24/439 (5%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++  + + GC++N Y++  M+++   +GYE V   + AD+ ++NTC +   A  K    L
Sbjct: 21  KKVALHNLGCKVNAYETEAMQELLEKEGYEIVPFKEGADIYIINTCTVTNMADRKSRQML 80

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R +       K   + +VV AGC  QA   E       +++++G      L  +L+  +
Sbjct: 81  HRAK-------KMNPNAIVVAAGCYVQA-KSESKETDESIDIIIGNNKKQDLISILKEYQ 132

Query: 145 FG-----KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
                  K ++D +++ E +   LS             A+L +Q+GC++FCT+C++PY R
Sbjct: 133 EKHDGIQKEIIDINHTKEYEELHLS------KTAEHTRAYLKVQDGCNQFCTYCIIPYAR 186

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G   SR    VV E ++L+ NG  E+ L G ++++  G  L GE      L+ +++EI+G
Sbjct: 187 GRVRSREKENVVAEVKQLVANGYQEVVLTGIHLSS-YGVDLQGE--DLLSLILAVNEIEG 243

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           L R+R  +  PR +++   K    L+ + P+ HL +QSG +  LK MNRR+TA EY +  
Sbjct: 244 LKRIRLGSLEPRIITEEFAKTISGLEKICPHFHLSLQSGCNGTLKRMNRRYTAEEYFEKC 303

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
           + +R    + A+++D IVGFPGET+++F  +   V+K+ + +   FKYS R GT  + M 
Sbjct: 304 ELLRKYFDNPALTTDVIVGFPGETEEEFEESRAFVEKVNFYETHIFKYSRREGTKAAVME 363

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV--GRSPWLQS 437
            QV E +K +R   L +    ++  + +  +G+ +EVL+E+  +++GK    G +     
Sbjct: 364 NQVPEQIKTKRSNILLELDERKRKEYEEKFIGKTVEVLMEEEVEKEGKRYQTGHTKEYIK 423

Query: 438 VVLNSKNHNIGDIIKVRIT 456
           V L S  +    ++K++I 
Sbjct: 424 VALESDENMQNQLVKIKID 442


>gi|114567094|ref|YP_754248.1| MiaB-like tRNA modifying enzyme [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
 gi|114338029|gb|ABI68877.1| MiaB-like tRNA modifying enzyme [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
          Length = 456

 Score =  338 bits (867), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 124/457 (27%), Positives = 221/457 (48%), Gaps = 25/457 (5%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++    + GC++N  ++ ++++ F  +GY+ V+  + ADL ++NTC +   +  K  + L
Sbjct: 2   KKVAFHTLGCKVNQVETEQLKEKFIQRGYQLVDFNESADLYIVNTCTVTHSSDRKSRAML 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
                      +     +VV  GC+AQ +  ++    P +N++VG Q    + EL+E   
Sbjct: 62  -------RRAARRNPGAMVVATGCLAQVDAAQLAA-IPGLNLIVGSQQKEAILELIEGQV 113

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGY-NRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             +   +             +    Y  R     AF+ IQ+GC  +C++C+VP+ RG   
Sbjct: 114 SSRSESEPLIVCPPLVAGKKLPPVIYSKRHERSRAFVKIQDGCQSYCSYCIVPFARGPSR 173

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKGLVR 262
           S+    V  E ++L+D G  EI L G +   +   G D E    S LL  L + ++G  R
Sbjct: 174 SKLPEDVAAELQQLVDLGYHEIVLTGIHTGLY---GNDLEDWNLSRLLRLLFARVEGNYR 230

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R ++  P ++ + L++     + L  + H+P+QSGS RIL++MNRR+    Y +++  I
Sbjct: 231 IRLSSLEPVEIDEELLEMAAGGERLCRHFHIPLQSGSSRILRAMNRRYDREFYYKLVQHI 290

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
                  A+++D +VGFPGE   D++ T+ L+  +       FKYS R GT  + M  QV
Sbjct: 291 VQRVKGAAVTADVMVGFPGEEKKDYQDTLALLQDLPVLDLHVFKYSKRPGTAAAKMEPQV 350

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
            +  K  R   L +    ++ SF +  +GQ +EVL+E+   E     G S     +  +S
Sbjct: 351 SDREKEMRSAELIQLAEAKKRSFINQQLGQELEVLVEQIVGEDS-FRGLSDNYLELEFSS 409

Query: 443 KNHNI----GDIIKVRITDVKIST------LYGELVV 469
               I    G++I V + +   ++      LYG  ++
Sbjct: 410 PRELIDELTGELIMVEL-EAMENSIARGRLLYGSFLI 445


>gi|56695846|ref|YP_166197.1| ribosomal protein S12 methylthiotransferase [Ruegeria pomeroyi
           DSS-3]
 gi|81350443|sp|Q5LUV8|RIMO_SILPO RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|56677583|gb|AAV94249.1| RNA modification enzyme, MiaB-family [Ruegeria pomeroyi DSS-3]
          Length = 466

 Score =  338 bits (867), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 122/456 (26%), Positives = 195/456 (42%), Gaps = 36/456 (7%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
              + S GC   + DS R+     ++GY        AD +++NTC   + A  +    +G
Sbjct: 32  TIGMVSLGCPKALVDSERILTRLRAEGYGISPDYAGADAVIVNTCGFLDSAKAESLDAIG 91

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
               LK +         V+V GC+  AE + I    P +  V GP  Y ++ + +  A  
Sbjct: 92  EA--LKENGK-------VIVTGCLG-AEPDYIREHHPRILAVTGPHQYEQVLDAVHGA-- 139

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                       D F  L    G     R   ++L I EGC+  C FC++P  RG   SR
Sbjct: 140 -------VPPDPDPFVDLLPASGVQLTPRHY-SYLKISEGCNHKCKFCIIPDMRGKLASR 191

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE---------KCTFSDLLYSLSE 256
               V+ EA KL+DNGV E+ ++ Q+ +A  G     +         +   +DL   L +
Sbjct: 192 PAHAVLREAEKLVDNGVKELLIISQDTSA-YGLDRKYDTNLWKNREVRSHITDLARELGQ 250

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           +   VRL Y   +P       + A      L+PYL +P Q      LK M R   A    
Sbjct: 251 LDAWVRLHYVYPYPHVRELIPLMADAGC-NLLPYLDIPFQHAHPDTLKRMARPAAAARTL 309

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
             I   R + P+I + S FIVG+PGET+ +F+  +D +D+    +   F+Y    G   +
Sbjct: 310 DEIAAWREICPEITLRSTFIVGYPGETEAEFQTLLDWMDEAQLDRVGCFQYENVAGARSN 369

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG--KLVGRSPW 434
           ++ + V   VK ER      K +    +   A VGQ+IEV++++   E    +    +P 
Sbjct: 370 DLPDHVPAEVKQERWDRFMAKAQAISEAKLAARVGQVIEVIVDEVDDEAATCRTKSDAPE 429

Query: 435 LQSVVLNS---KNHNIGDIIKVRITDVKISTLYGEL 467
           +   +      +    GDI+ V + +     L+G L
Sbjct: 430 IDGNLFIDEGFEGLQPGDIVTVEVDEAGEYDLWGRL 465


>gi|124266807|ref|YP_001020811.1| ribosomal protein S12 methylthiotransferase [Methylibium
           petroleiphilum PM1]
 gi|238066612|sp|A2SG87|RIMO_METPP RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|124259582|gb|ABM94576.1| conserved hypothetical protein [Methylibium petroleiphilum PM1]
          Length = 471

 Score =  338 bits (867), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 123/473 (26%), Positives = 199/473 (42%), Gaps = 50/473 (10%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           +P+  FV S GC   + DS  +     ++GY+   S   ADL+++NTC   + A ++   
Sbjct: 22  IPKIGFV-SLGCPKALTDSELILTQLRAEGYDTSKSFAGADLVIVNTCGFIDDAVKESLD 80

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEE----ILRRSPIVNVVVGPQTYYRLPE 138
            +G              +  V+V GC+    GE     + +  P V  V GP     + +
Sbjct: 81  TIGEALA---------ENGRVIVTGCLGAKAGEGGGNLVRQMHPSVLAVTGPHATQEVMD 131

Query: 139 LLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
            +                 D F  L     G        A+L I EGC+  C+FC++P  
Sbjct: 132 AVHVH---------VPKPHDPFVDLVPA-YGVKLTPRHYAYLKISEGCNHRCSFCIIPSM 181

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDL 250
           RG  +SR +  V++EAR L ++GV E+ ++ Q+ +A+      R    DG+  K   +DL
Sbjct: 182 RGDLVSRPIGDVLNEARALFESGVKELLVISQDTSAYGVDVKYRTGFWDGKPVKTRMTDL 241

Query: 251 LYSLSEI----KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306
           +  L E+       VRL Y   +P       + A G    ++PYL +P Q     +LK M
Sbjct: 242 VERLGELAEPFGAWVRLHYVYPYPHVDEILPMMAGG---RVLPYLDVPFQHAHPDVLKRM 298

Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
            R     +  + + R R   P I + S FI GFPGET+ +F   +D + +    +A  F 
Sbjct: 299 KRPANGEKNLERLQRWREACPQIVVRSTFIAGFPGETEAEFEHLLDFMREARIDRAGCFA 358

Query: 367 YSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-----KH 421
           YSP  G   + +   + E V+ ER                   VG  ++VLI+       
Sbjct: 359 YSPVEGASANALAGALPEAVREERRARFMAVAEAVSAEKLRERVGAEMQVLIDAAPALGK 418

Query: 422 GKEKGKLVGRSPWLQSVVL------NSKNHNIGDIIKVRITDVKISTLYGELV 468
              +G+    +P +  VV        SK   +G+  + RI   +   L G+ +
Sbjct: 419 KGGRGRSYADAPEIDGVVHLLPPQKASKQLRVGEFTRARIVGTQGHDLVGQPL 471


>gi|256830728|ref|YP_003159456.1| MiaB-like tRNA modifying protein YliG [Desulfomicrobium baculatum
           DSM 4028]
 gi|256579904|gb|ACU91040.1| MiaB-like tRNA modifying enzyme YliG [Desulfomicrobium baculatum
           DSM 4028]
          Length = 441

 Score =  338 bits (867), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 116/452 (25%), Positives = 206/452 (45%), Gaps = 29/452 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R    S GC  N  D+  M   F +  +      +DAD++++NTC   E A  +    + 
Sbjct: 5   RIHTISLGCPKNQVDTEWMLGGFGAS-FVNAAEPEDADVVLINTCGFIEPAVSESLQVIL 63

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +        +      +VV GC+    G+++    P V++ +         E+  +   
Sbjct: 64  DMAQ---RLAELSPRPSLVVTGCLVSRYGQDLRCELPEVDLFL---------EIGRQNEL 111

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT-----AFLTIQEGCDKFCTFCVVPYTRG 200
           G+R+ +     ED    L    GG++  R +T     A+L I EGCD  C FC +P  RG
Sbjct: 112 GQRLRELAELREDARPGLEAALGGFSAARLLTTPQSFAYLKIAEGCDNRCRFCTIPSIRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
             +SR  + ++D+AR+ +  G  E+ L+ Q+V A+   G D  +     LL  L+ + GL
Sbjct: 172 PLVSRDEAGILDDARRCLAQGRKELVLIAQDVTAY---GRDRGQKALRGLLEKLAPLNGL 228

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDV-LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
             +R    +P  +   L++   DL    +PY  +P+Q     IL SM R       R ++
Sbjct: 229 EWMRLMYLYPAGLDGDLLRFLADLGRPFIPYFDIPLQHAHPDILASMGRPFQRDP-RAVV 287

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
           +++R   P+ A+ + FIVG+PGET+  FRA    V +  +     F Y    G+  + + 
Sbjct: 288 EQVRKFFPEAALRTTFIVGYPGETEARFRALESFVREARFMHLGVFPYYAEDGSEAAILP 347

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRS----PW 434
           +Q+ + VK ER   + +   +          GQ ++VL+++ H +  G   GR+    P 
Sbjct: 348 DQLPDEVKEERRDRIMEMQADISADLLAGFEGQELDVLVDRAHEEWPGLYEGRTWFQAPE 407

Query: 435 LQSV-VLNSKNHNIGDIIKVRITDVKISTLYG 465
           +  +  ++ ++   G +++  I +VK   L  
Sbjct: 408 VDGITYVSGESVMPGKMVRAVIEEVKTYDLVA 439


>gi|150006722|ref|YP_001301465.1| putative Fe-S oxidoreductase [Parabacteroides distasonis ATCC 8503]
 gi|149935146|gb|ABR41843.1| putative Fe-S oxidoreductase [Parabacteroides distasonis ATCC 8503]
          Length = 444

 Score =  338 bits (867), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 124/438 (28%), Positives = 207/438 (47%), Gaps = 17/438 (3%)

Query: 17  IVDQCIVP-QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREK 75
           ++DQ +   ++    + GC++N  ++  +  +   QG  +V   + AD+ V+NTC + E 
Sbjct: 1   MIDQTVFNNKKAAYYTLGCKLNFAETSTIGKLLAEQGVRKVRPGEKADICVVNTCSVTEL 60

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135
           A +K    + RI        K+     +VV GC AQ + EE+      V++V+G +    
Sbjct: 61  ADKKCRQAIRRI-------GKQHPGAFIVVTGCYAQLKPEEV-SHIEGVDLVLGAEQKLE 112

Query: 136 LPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
           + + LE     +       S        S      +R R    FL +Q+GCD +C++C +
Sbjct: 113 ILQYLENLEKKENGGAVIASQSKDIRSFSPSCSADDRTR---HFLKVQDGCDYYCSYCTI 169

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
           P+ RG   + +++ +V++A+++   G  EI L G N+    G        TF DL+ +L 
Sbjct: 170 PFARGRSRNGTIASMVEQAQEVARKGGKEIVLTGVNI----GDFGKSTDETFIDLIRALD 225

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
           E+ G+VR R ++  P  ++D  I          P+ H+P+QSGSD +L+ M RR+    +
Sbjct: 226 EVDGIVRYRISSIEPNLITDEAIDFVAHSKRFAPHFHIPLQSGSDAVLQLMRRRYDTALF 285

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
           R  I++I+ V P   I  D IVG  GETD+ F      +  +  +Q   F YS R GT  
Sbjct: 286 RHKIEKIKEVMPHAFIGVDVIVGTRGETDEYFEEARQFIGSLDISQLHVFSYSERPGTQA 345

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWL 435
             +   VD   K  R   L      +  +F +A +GQ + VL E H K+ GK+ G +   
Sbjct: 346 LKIDHVVDPKTKHARSQQLLDISDRKLHAFYEAHIGQEVNVLFE-HTKKDGKMHGFTENY 404

Query: 436 QSVVLNSKNHNIGDIIKV 453
             V +      + +  KV
Sbjct: 405 IKVEIPYDATLVNETRKV 422


>gi|83309313|ref|YP_419577.1| 2-methylthioadenine synthetase [Magnetospirillum magneticum AMB-1]
 gi|82944154|dbj|BAE49018.1| 2-methylthioadenine synthetase [Magnetospirillum magneticum AMB-1]
          Length = 452

 Score =  338 bits (867), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 133/439 (30%), Positives = 213/439 (48%), Gaps = 29/439 (6%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           + ++GC++N Y+S  M++   +       +    + +++NTC +  +A  +    + +IR
Sbjct: 42  ILTFGCRLNAYESEVMKEHAKA-------TESGVETVIVNTCAVTAEAERQARQAIRKIR 94

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
                  +E  D  +VV GC AQA  E      P ++ ++G       P++       + 
Sbjct: 95  -------RERPDARIVVTGCAAQAHPET-FDAMPEIDQILGN-AEKMQPDIFAAPPAERI 145

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           VV     V +    L     G  R     AF+ +Q+GCD  CTFC++P+ RG   S  + 
Sbjct: 146 VVGDIMEVREVASHLVSGFEGRAR-----AFVEVQQGCDHRCTFCIIPFGRGPNRSVPMG 200

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
           ++V++ ++L+  G  E+ L G +V A  G  L G+      +   L+ +  L RLR ++ 
Sbjct: 201 RIVEQIKELVAGGFNEVVLTGVDVTA-YGADLPGKPGLGQLVRRLLAALPELPRLRLSSL 259

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
            P ++ + L+ A      L+P+ HL VQ+G D ILK M RRH   +   +  RIR++RPD
Sbjct: 260 DPVEVDEDLLAAIASEARLLPHFHLSVQAGDDTILKRMKRRHLRGDVITLAARIRALRPD 319

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
             + +D I GFP E ++ F+ ++DLVD+ G      F +S R GTP + M  +V  +V  
Sbjct: 320 AVLGADIIAGFPTEDEEMFQHSLDLVDEAGLTHLHVFPFSARPGTPAARMP-KVKGDVVK 378

Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIG 448
           ER   L+ K      +F    +G +  VLIEK GK      G S     V +       G
Sbjct: 379 ERAARLRAKGAAAMAAFLATRIGGVESVLIEKDGK------GHSAHYLPVRVAGCAAEPG 432

Query: 449 DIIKVRITDVKISTLYGEL 467
            I+ VRIT V    L GEL
Sbjct: 433 TILNVRITSVDGDELVGEL 451


>gi|159045158|ref|YP_001533952.1| ribosomal protein S12 methylthiotransferase [Dinoroseobacter shibae
           DFL 12]
 gi|238065338|sp|A8LI17|RIMO_DINSH RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|157912918|gb|ABV94351.1| UPF0004 protein yliG [Dinoroseobacter shibae DFL 12]
          Length = 456

 Score =  338 bits (867), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 120/462 (25%), Positives = 197/462 (42%), Gaps = 34/462 (7%)

Query: 18  VDQCIVP--QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREK 75
           +D    P      + S GC   + DS R+     ++GY        A+ +++NTC   + 
Sbjct: 18  IDPAARPGQPTIGMVSLGCPKALVDSERILTRLRAEGYAISPDYAGAEAVIVNTCGFLDS 77

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135
           A  +    +G   +          +  V+V GC+  AE E I    P V  V GP  Y +
Sbjct: 78  AKAESLEAIGEALS---------ENGRVIVTGCLG-AEPEYITGHHPSVLAVTGPHQYEQ 127

Query: 136 LPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
           + + +  A              D F  L    G     R   ++L I EGC+  C FC++
Sbjct: 128 VLDAVHAA---------VPPSPDPFVDLLPASGVSLTPRHY-SYLKISEGCNHKCKFCII 177

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW----RGKGLDGEKCTFSDLL 251
           P  RG   SR    VV EA KL++ GV E+ ++ Q+ +A+    R     G +   +DL 
Sbjct: 178 PDMRGRLASRPAHAVVREAEKLVEAGVRELLVISQDTSAYGVDIRHAEDRGHRAHITDLA 237

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
             L  +   VRL Y   +P       + A G   +++PYL +P Q      L+ M R   
Sbjct: 238 RDLGGLGAWVRLHYVYPYPHVRDLIPLMAEG---LVLPYLDIPFQHAHPDTLRRMARPAA 294

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
           A +    I   R++ P+I + S FIVG+PGET+ +F+  +D +D+    +   F+Y    
Sbjct: 295 AEKTLDRIAEWRAICPEITLRSTFIVGYPGETEAEFQTLLDWMDEAQLDRVGCFQYENVA 354

Query: 372 GTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG--KLV 429
           G   + + + V   VK +R      K +    +   A VG  IEV++++   E    +  
Sbjct: 355 GARSNALPDHVAPEVKQDRWERFMAKAQAISAAKLAAKVGSRIEVIVDEVDAEAATCRTK 414

Query: 430 GRSPWLQSVVLNS---KNHNIGDIIKVRITDVKISTLYGELV 468
             +P +   +      +    GDI+ V + +     L+G  V
Sbjct: 415 ADAPEIDGNLFIDAGFEGLAPGDIVTVDVDEASDYDLWGTRV 456


>gi|229825006|ref|ZP_04451075.1| hypothetical protein GCWU000182_00355 [Abiotrophia defectiva ATCC
           49176]
 gi|229790753|gb|EEP26867.1| hypothetical protein GCWU000182_00355 [Abiotrophia defectiva ATCC
           49176]
          Length = 449

 Score =  338 bits (867), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 125/455 (27%), Positives = 225/455 (49%), Gaps = 23/455 (5%)

Query: 28  FVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRI 87
              + GC++N Y++  +++MF + GYE     + AD+ ++NTC +   A  K    L R 
Sbjct: 2   AFLTLGCKVNAYETESIKEMFKNNGYEIKQFNEVADIYIVNTCTVTNIADRKSRQMLHRA 61

Query: 88  RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147
           + L         + +VV  GC  QA   ++     +V+++VG +    +  L+E      
Sbjct: 62  KKL-------NPEAVVVAVGCYVQAPQSKL-EDDDLVDILVGTRGKSSVLSLVEEYIRSN 113

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKR----GVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           +  D  ++V    E                    A + IQ+GCD+FCT+C++P+ RG   
Sbjct: 114 KTRDFKHNVIKSGEENKDWAYDSGEVNAGGGKNRANIKIQDGCDQFCTYCIIPFVRGRIR 173

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR +  +V+E  +L+  G  E+ L G ++ +  G+ +DGE     +LL  L++++G  R+
Sbjct: 174 SRDMEGIVEETDRLVKAGFREMVLTGIHIGS-YGRDIDGE-SRMLELLTELNKVEGDFRI 231

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R  +  PR +++  ++    L  + P+ HL +QSGS  +LK MNR + A EY   +  ++
Sbjct: 232 RLGSVEPRLITEEFLEGLVKLKKVCPHFHLSLQSGSTTVLKRMNRHYGAEEYLNSVKLLK 291

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
                  I++D IVGFPGETD++F  T+  V ++G+ +   F YS R GT  + M EQ+ 
Sbjct: 292 KYYDRPGITTDIIVGFPGETDEEFEETVAFVKEVGFLKVHVFPYSKRDGTYAAKMNEQIA 351

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSV---- 438
             +K ER   L K   E    + ++  G + +VL+E+  K  +  ++  S     V    
Sbjct: 352 PEIKKERENILIKVCEEVSEKYLESFNGDMEQVLLEEEIKGREDYVMAHSARYIEVAVPK 411

Query: 439 -VLNSKNHNIGDIIKVR---ITDVKISTLYGELVV 469
            +L+ + +   + + V+   ++D     L G ++ 
Sbjct: 412 MILSGRENADKEFLNVKGMMLSDTSDGALKGMMIA 446


>gi|154501155|ref|ZP_02039193.1| hypothetical protein BACCAP_04845 [Bacteroides capillosus ATCC
           29799]
 gi|150269847|gb|EDM97382.1| hypothetical protein BACCAP_04845 [Bacteroides capillosus ATCC
           29799]
          Length = 434

 Score =  338 bits (867), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 131/452 (28%), Positives = 224/452 (49%), Gaps = 28/452 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R+ + + GC++N Y++  +E     +G+  V   D+AD  ++NTC +   +  K  + + 
Sbjct: 2   RYAIYTLGCKVNQYETQALETELLRRGHTLVPFEDEADAYIINTCTVTAVSDRKSRNAIR 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER--- 142
           R +       K     +V V GC AQ   +++      V++V G          +ER   
Sbjct: 62  RAK-------KRNPAAVVAVCGCYAQTAPDDVAAL--GVDLVSGTGDRLGFLNEVERLSG 112

Query: 143 -----ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197
                A     ++  +      FE+L    G   R R   A L +++GC  FCT+C++PY
Sbjct: 113 LVRAEAELVPEMLVDNIMTHRSFEQLP-AGGLEGRTR---AMLKVEDGCVNFCTYCIIPY 168

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257
            RG   S +LS  V++A+KL  +G  EI L G  +++W  +  DG   +  DL+  +   
Sbjct: 169 ARGPVRSLALSAAVEQAKKLAQDGYREIVLTGIEISSWGHEFKDG--TSLIDLVEGICHA 226

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
              +R+R  +  PR +++   +    L  L P+ HL +QSG D +LK MNR++   +Y +
Sbjct: 227 VPDLRVRLGSLEPRTITEDFCRRAAALPNLCPHFHLSMQSGCDAVLKRMNRKYDTAQYYE 286

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
            +  +R      AI++D IVGFPGE++++F +T++ V+K  ++    F YS R GTP + 
Sbjct: 287 SVTLLRGFFDRPAITTDLIVGFPGESEEEFTSTLEFVEKCAFSSMHIFPYSRRTGTPAAK 346

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQS 437
           M +QV   VK ER           + ++ +  VG  + VL E+  ++ G   G +P    
Sbjct: 347 MSDQVPNAVKEERAALAGALAARLKAAYLEQWVGTSLPVLFEE--EKNGLWRGHAPNYVE 404

Query: 438 VVLNSKN-HNIGDIIKVRITDVKISTLYGELV 468
           V+ + +  HN+  I  V+IT +    L GEL+
Sbjct: 405 VMAHGEGLHNV--IRDVKITGLHGDGLLGELL 434


>gi|152991220|ref|YP_001356942.1| tRNA modifying enzyme [Nitratiruptor sp. SB155-2]
 gi|238066418|sp|A6Q526|RIMO_NITSB RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|151423081|dbj|BAF70585.1| tRNA modifying enzyme [Nitratiruptor sp. SB155-2]
          Length = 435

 Score =  338 bits (866), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 111/454 (24%), Positives = 215/454 (47%), Gaps = 30/454 (6%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + ++  V S GC  N+ D+  M        YE     ++ADLI++NTC     A E+   
Sbjct: 1   MSKKLHVVSLGCTKNLVDTEVMLARLPE--YEITQIPEEADLIIVNTCGFIGPAKEESLQ 58

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +  +        +   D  +V+AGC+++   EE+ +  P V++  G   Y ++ EL+ +
Sbjct: 59  TVFDL------HSRRKKDSTLVMAGCLSERYKEELQKEMPEVDIFTGVGDYAKIDELISQ 112

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            +          S       L   +          A++ + EGC++ C+FC +P  +G  
Sbjct: 113 KK----------SSFSDQVYLIRSEERIITGSNYHAYIKLSEGCNQQCSFCAIPSFKGKL 162

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR +  +V E + L+  G  + T + Q+ +++      G + +  DL++++ EI+G++ 
Sbjct: 163 QSRPIEDIVQEIKNLVAKGYKDFTFVSQDSSSYLRDF--GIQESLVDLIHAVEEIEGIMS 220

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
            R    +P   +  +I A  +  V + Y  +P+Q  SD +LK M R   A + ++++  +
Sbjct: 221 ARILYLYPSTTTPKMIDAIANSPVFVNYFEMPIQHISDSLLKKMKRGIGAQKTKELLYAM 280

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+  P+  + +  IVG PGE+++DF   ++ ++   + +   F YS   GT    M E++
Sbjct: 281 RA-VPESFLRTSLIVGHPGESEEDFHELVEFLEDFEFDRINLFAYSDEEGTKAYEMEEKI 339

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLVGR----SPWLQS 437
            + V  ERL  L   +++QQ+   +  +G+ +E  ++   +E    L GR    +P +  
Sbjct: 340 PQEVIEERLAILDAIVKKQQMKSLEKDLGKTVECYLDGTSEESELLLSGRKKIWAPEVDG 399

Query: 438 VVLNS----KNHNIGDIIKVRITDVKISTLYGEL 467
            +L +     N  IG++ KV I +     L G +
Sbjct: 400 EILINDSEIDNLQIGNLYKVHINERLGDKLVGTV 433


>gi|29829050|ref|NP_823684.1| hypothetical protein SAV_2508 [Streptomyces avermitilis MA-4680]
 gi|81720044|sp|Q82K95|RIMO_STRAW RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|29606156|dbj|BAC70219.1| hypothetical protein [Streptomyces avermitilis MA-4680]
          Length = 495

 Score =  338 bits (866), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 128/488 (26%), Positives = 206/488 (42%), Gaps = 53/488 (10%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +   + + GC  N  DS  +     + G++ V   +DAD+ V+NTC   E A +     L
Sbjct: 5   RTVALVTLGCARNEVDSEELAGRLEADGWQLVEDAEDADVAVVNTCGFVEAAKKDSVDAL 64

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
               +LK      G    VV  GC+A+  G+E+    P  + V+G   Y  + + L+   
Sbjct: 65  LEANDLKG----HGRTQAVVAVGCMAERYGKELAEALPEADGVLGFDDYTNISDRLQTIL 120

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYN--------------------------------- 171
            G   +   ++  D+ + L I                                       
Sbjct: 121 NGG--IHAAHTPRDRRKLLPISPAERQSAGADVALPGHGAPEGLPEDLPEGLAPESGPRA 178

Query: 172 --RKR---GVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEIT 226
             R+R      A + +  GCD+ C+FC +P  RG  ISR  S V+ E R L + GV E+ 
Sbjct: 179 PLRRRLDGSPVASVKLASGCDRRCSFCAIPSFRGSFISRRPSDVLGETRWLAEQGVKEVM 238

Query: 227 LLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV 286
           L+ +N N   GK L G+      LL  L+E+ G+ R+R +   P +M   LI        
Sbjct: 239 LVSEN-NTSYGKDL-GDIRLLETLLPELAEVDGIERVRVSYLQPAEMRPGLIDVLTSTPK 296

Query: 287 LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDD 346
           + PY  L  Q  +  +L++M R      + +++D IRS  P   + S+FIVGFPGET+ D
Sbjct: 297 IAPYFDLSFQHSAPDVLRAMRRFGDTDRFLELLDTIRSKAPQAGVRSNFIVGFPGETEAD 356

Query: 347 FRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFN 406
                  +          F YS   GT  +    ++DE+V A RL  + +   E      
Sbjct: 357 LAELERFLTGARLDAIGVFGYSDEEGTEAATYGHKLDEDVVAARLARVSRLAEELVAQRA 416

Query: 407 DACVGQIIEVLIEKHGKEKGKLVGR----SPWLQS-VVLNSKNHN-IGDIIKVRITDVKI 460
           +  VG+ + VL+E    E+G  VGR    +P     V+  S     +G +++ ++   + 
Sbjct: 417 EERVGETVHVLVESIDDEEG-AVGRAEHQAPETDGQVLFTSGEGLTVGRMVEAKVVGTEG 475

Query: 461 STLYGELV 468
             L  E +
Sbjct: 476 VDLVAEPL 483


>gi|254494844|ref|ZP_01051876.2| MiaB-like tRNA modifying enzyme [Polaribacter sp. MED152]
 gi|213690426|gb|EAQ41304.2| MiaB-like tRNA modifying enzyme [Polaribacter sp. MED152]
          Length = 444

 Score =  338 bits (866), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 120/443 (27%), Positives = 216/443 (48%), Gaps = 17/443 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++    + GC++N  ++  +   F ++G+E+V+  + AD+ V+NTC + + A +      
Sbjct: 5   KKVAFYTLGCKLNFSETSTIARNFVNEGFEKVDFEEVADIYVINTCSVTDNADK------ 58

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R +++  + +K+  +  ++  GC AQ + EE+      V++V+G    + +   L    
Sbjct: 59  -RFKSIVKNALKKNENAFLIAVGCYAQLKPEELAAVD-GVDLVLGATEKFNVTSYLNDLS 116

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
                 D       +        G Y+      AFL +Q+GCD  CT+C +P  RGI  S
Sbjct: 117 KN----DLGEVHSCEIVDADFYVGSYSIGDRTRAFLKVQDGCDYKCTYCTIPLARGISRS 172

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK---CTFSDLLYSLSEIKGLV 261
            +L  V++ A+++   G+ EI L G N+    GKG  G K    TF +L+  L  ++G+ 
Sbjct: 173 DTLQNVINNAKEISSKGIKEIVLTGVNIG-DYGKGEFGNKKHEHTFLELVKELDLVEGIH 231

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           RLR ++  P  + D  I      +  +P+ H+P+QSGSD++LK M RR+    Y   +++
Sbjct: 232 RLRISSIEPNLLKDETIDFVSKSNSFVPHFHIPLQSGSDKLLKKMKRRYLKNTYTNRVNK 291

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I+ V P+  I  D IVGFPGETD+ F  T + ++ +  +    F YS R  T   +    
Sbjct: 292 IKEVMPNACIGVDVIVGFPGETDELFLETYNYLNDLNISYLHVFTYSERPNTEAVDFDGV 351

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           V +  +A+R   L+    +++ +F ++ +G  + VL E   KE G + G +     V   
Sbjct: 352 VPKKTRAKRSKMLRGLSAKKRRAFYESQLGNTLTVLFENENKE-GYINGFTENYVKVKTP 410

Query: 442 SKNHNIGDIIKVRITDVKISTLY 464
                +  +  + +T +    L 
Sbjct: 411 WNPELVNTLHTIELTKIDEDGLV 433


>gi|298479874|ref|ZP_06998074.1| 2-methylthioadenine synthetase [Bacteroides sp. D22]
 gi|298274264|gb|EFI15825.1| 2-methylthioadenine synthetase [Bacteroides sp. D22]
          Length = 439

 Score =  338 bits (866), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 117/456 (25%), Positives = 212/456 (46%), Gaps = 20/456 (4%)

Query: 17  IVDQCIVPQRFFVK-SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREK 75
           ++D  +   +  V  + GC++N  ++  +  +    G       + AD+ V+NTC + E 
Sbjct: 1   MIDTTVFQNKTAVYYTLGCKLNFSETSTIGKILREAGVRTARKGEKADICVVNTCSVTEM 60

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135
           A +K    + R+       +K+  D  VVV GC AQ +  ++  +   V+VV+G +    
Sbjct: 61  ADKKCRQAIHRL-------VKQHPDAFVVVTGCYAQLKPGDVA-KIDGVDVVLGAEQKGE 112

Query: 136 LPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
           L + L   +  ++      + +D            +R      FL +Q+GCD FC++C +
Sbjct: 113 LLQYLGDLQKHEKGEAITTTTKDIRSFSP----SCSRGDRTRFFLKVQDGCDYFCSYCTI 168

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
           P+ RG   + +++ +V++AR+    G  EI L G N+    G        +F DL+ +L 
Sbjct: 169 PFARGRSRNGTIASMVEQARQAAAEGGKEIVLTGVNI----GDFGKTTGESFFDLVKALD 224

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
           +++G+ R R ++  P  ++D +I+        MP+ H+P+QSG D +L+ M RR+    +
Sbjct: 225 QVEGIERYRISSIEPNLLTDEIIEFVSHSRSFMPHFHIPLQSGCDEVLQLMRRRYDTALF 284

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
              + +I+ V PD  I  D IVG  GET + F      +D +   Q   F YS R GT  
Sbjct: 285 ASKVKKIKEVMPDAFIGVDVIVGTRGETPEYFEQAYQFIDGLDVTQLHVFSYSERPGTQA 344

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWL 435
             +   V    K +R   L     ++  +F    +GQ + VL+EK  K    + G +   
Sbjct: 345 LKIEYVVSPEEKHQRSQRLLALSDQKTQAFYARHIGQTMPVLMEK-SKAGAPMHGFTENY 403

Query: 436 QSVVLNSKNHNIGDIIKVRITDVKI--STLYGELVV 469
             V + S +     ++ VR+ +     + L G +++
Sbjct: 404 IRVEVESDDSLDNQVVNVRLGEFNEEMAALKGTILI 439


>gi|223937022|ref|ZP_03628930.1| MiaB-like tRNA modifying enzyme YliG [bacterium Ellin514]
 gi|223894303|gb|EEF60756.1| MiaB-like tRNA modifying enzyme YliG [bacterium Ellin514]
          Length = 556

 Score =  338 bits (866), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 128/559 (22%), Positives = 219/559 (39%), Gaps = 110/559 (19%)

Query: 16  QIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREK 75
           +  D    P R  + S GC  N+ D+  M       G E  N    AD++++NTC   + 
Sbjct: 2   KSSDTNKRPVRVGLISLGCAKNLVDAEIMLGSLMKGGVEITNDATQADVVIVNTCSFIDS 61

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135
           A E+    + +   ++ +  +  G   ++V+GC+ Q   EE+ +  P V+V +G     +
Sbjct: 62  AQEESVDTILQSEEVREANNRGQG---LIVSGCLPQRFREELPKLLPEVDVFMGIDQVAQ 118

Query: 136 LPELLERARFG------------------------------------------------- 146
           + E++ +A                                                    
Sbjct: 119 VTEIVHKALDHRAEKLKNAKGKGQNSKTNIVEKIAELDKARAELKHEDEESLRGTEKFGK 178

Query: 147 -KRVVDTDYSVEDKFERLSIVD----GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
            K VV     + D   R   +       +       A++ I EGC+  C+FC++P  RG 
Sbjct: 179 TKTVVAPAVPLMDVNARPVYIPDFETPRFRLTPKHFAYVKIAEGCNHPCSFCIIPRMRGS 238

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG---------------------KGL 240
             SR  + +V EA++LI +GV E+ L+ Q+   + G                     K L
Sbjct: 239 HRSRVQADIVREAKQLIADGVKELNLISQDST-YYGLDLRPNHSRNIASPEKFNSAAKSL 297

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300
             +  T   LL  L+ I G   +R   +HP   +D LI+       +  Y+ +P+Q   +
Sbjct: 298 PADATTLCTLLRELNAIPGDFWIRLLYTHPAHWTDELIQTIAKCKKVARYVDMPLQHIHE 357

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
            +L+ M R  +      +I RIR+  P IAI + FIVGFPGET+  F+  ++ +    + 
Sbjct: 358 NMLERMRRETSEQYIVNLIQRIRAGIPGIAIRTTFIVGFPGETETYFKTLLNFIRDTKFE 417

Query: 361 QAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE- 419
           +   F YS   GT   NM  Q+ + +K++R      +  +      ++ VG+ + VL+E 
Sbjct: 418 RLGVFTYSKEDGTRAGNMEGQLADKIKSKRRELAMAEQLKVAKQVAESFVGKELRVLVEA 477

Query: 420 ---------------------KHGKEKGKLVGR---------SPWLQSVVLNSKNHNIGD 449
                                   K+ G+L GR         +P +   V    N  IG+
Sbjct: 478 EASAKELKNAKISSWEHGLIRGEDKQLGQLKGRYLVARSEADAPDIDGRVYVRGNLPIGE 537

Query: 450 IIKVRITDVKISTLYGELV 468
             +VR+       L  E +
Sbjct: 538 FAQVRVIGHTDYDLIAEPI 556


>gi|83952788|ref|ZP_00961518.1| RNA modification enzyme, MiaB family protein [Roseovarius
           nubinhibens ISM]
 gi|83835923|gb|EAP75222.1| RNA modification enzyme, MiaB family protein [Roseovarius
           nubinhibens ISM]
          Length = 482

 Score =  338 bits (866), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 122/465 (26%), Positives = 203/465 (43%), Gaps = 36/465 (7%)

Query: 15  SQIVDQCIVPQ-RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIR 73
           +++ D     Q    + S GC   + DS R+     ++GY        AD +++NTC   
Sbjct: 41  ARVTDTSRAGQPTIGMVSLGCPKALVDSERILTRLRAEGYGISPDYSGADAVIVNTCGFL 100

Query: 74  EKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTY 133
           + A  +    +G    LK +         V+V GC+  AE + I    P V  V GP  Y
Sbjct: 101 DSAKAESLEAIGEA--LKENGR-------VIVTGCLG-AEPDYITGVHPKVLAVTGPHQY 150

Query: 134 YRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC 193
            ++ + +  A              D F  L          R   ++L I EGC+  C FC
Sbjct: 151 EQVLDAVHGA---------VPPSPDPFVDLLPASSVKLTPRHY-SYLKISEGCNHKCKFC 200

Query: 194 VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-----GEKCTFS 248
           ++P  RG   SR    V+ EA KL++NGV E+ ++ Q+ +A  G  +      G +   +
Sbjct: 201 IIPDMRGRLASRPAFAVMREAEKLVENGVRELLVISQDTSA-YGVDIKHAEDRGHRAHIT 259

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
           DL   L  +   VRL Y   +P       + A G   +++PYL +P Q     +LK M R
Sbjct: 260 DLARDLGSLGAWVRLHYVYPYPHVRQLIPLMAEG---LVLPYLDIPFQHSHPDVLKRMAR 316

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
                +    I   R + PDI + S FIVG+PGET+ +F+  +D +D+    +   FKY 
Sbjct: 317 PAHTSKTLTEIAAWRDICPDITLRSTFIVGYPGETEAEFQHLLDWMDEAQLDRVGCFKYE 376

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--- 425
              G   +++ + V E VK ER     +K +    +   A VG + EV+++    +    
Sbjct: 377 NVDGARSNDLPDHVAEEVKQERWERFMEKAQAISEAKLAAKVGSVQEVIVDDIDADGIAT 436

Query: 426 GKLVGRSPWLQSVVLNS---KNHNIGDIIKVRITDVKISTLYGEL 467
            +    +P +   +      +  ++GD++ V + +     L+G L
Sbjct: 437 CRTKADAPEIDGNLFIDEGTEGLSVGDLVSVTVDEAGEYDLWGRL 481


>gi|170592325|ref|XP_001900919.1| CDK5RAP1-like protein [Brugia malayi]
 gi|158591614|gb|EDP30219.1| CDK5RAP1-like protein, putative [Brugia malayi]
          Length = 453

 Score =  338 bits (866), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 144/461 (31%), Positives = 227/461 (49%), Gaps = 57/461 (12%)

Query: 36  MNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRI 95
           MNV D   +  +  S GY   + + +AD+I+L TC IRE A  KV+  L  +R ++    
Sbjct: 1   MNVNDVELVRSLLLSSGYVETDDVKEADIILLMTCSIREGAENKVWDELKVLRKIRRK-- 58

Query: 96  KEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYS 155
                 +V V GC+A+     +L  +  V+VV GP +Y  LP LL  AR G   ++   S
Sbjct: 59  ----KGVVGVLGCMAERVRHNLLTCTENVDVVAGPDSYRDLPRLLAIARCGSMAINVQLS 114

Query: 156 VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEAR 215
           VE+ +  +  V      K   TA+++I  GCD  CT+C+VPYTRG E SR ++ ++DE R
Sbjct: 115 VEETYADVVPVRKDKFSK---TAYVSIMRGCDNMCTYCIVPYTRGRERSRPMNSILDEIR 171

Query: 216 KLIDNGVCEITLLGQNVNAWRG-----------------------KGLDGEKCTFSDLLY 252
           +L D GV ++TLLGQNVN++R                                 F  LL 
Sbjct: 172 RLSDEGVKQVTLLGQNVNSYRDLSEISFLSANLAEPGVAPGFRTKYKPKRGGYXFLTLLD 231

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
            +S+I   +R+R+T+ HP+D    +I+   +   +   +HLP QSGS+ +L +M+R ++ 
Sbjct: 232 KVSQIDSEMRIRFTSPHPKDFPLEVIQLIKERSNICKQIHLPAQSGSNIVLDAMDRGYSR 291

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
             Y +++ RI++V P+++++SDFI GF GET+D  R ++DL+                  
Sbjct: 292 ESYLELVHRIKTVLPNVSLTSDFIAGFCGETEDCHRESLDLIK---------------HK 336

Query: 373 TPGSN-MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLVG 430
           T     + + V + VK  R   L    RE  +  N++ +G    VL+E+  K     L G
Sbjct: 337 TKAYRHLRDDVPKEVKNRRHQELAGAFRETALKHNESLLGTKQLVLLEETSKRSSEHLRG 396

Query: 431 RSPWLQSVVLNS--------KNHNIGDIIKVRITDVKISTL 463
           R+    SV++N              GD +  +I      TL
Sbjct: 397 RTDGGVSVIINKYYNDGSGLVELKPGDYVVAKIISANSQTL 437


>gi|108804264|ref|YP_644201.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Rubrobacter xylanophilus
           DSM 9941]
 gi|108765507|gb|ABG04389.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Rubrobacter xylanophilus
           DSM 9941]
          Length = 445

 Score =  337 bits (865), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 153/441 (34%), Positives = 237/441 (53%), Gaps = 30/441 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
              ++++GCQMNV+DS RM  M    GY  V   +DADL++LNTC++RE A  ++   LG
Sbjct: 30  TACIRTFGCQMNVHDSDRMRRMILDAGYAEVQRYEDADLVILNTCYVRENAVNRIRGHLG 89

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +  L+    +EG    V + GC+  ++    L+    +++V+G    Y L E +     
Sbjct: 90  ELNRLR----REGRVKKVALTGCIGASDEAAELQEQYGIDLVLGTHNTYELAEFI----- 140

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                      E     L  V+G        +AF+TI  GC+  C++CVVP  RG  + R
Sbjct: 141 -----GLPTMEETYTPELPGVEGQK------SAFVTIMTGCNYRCSYCVVPRVRGRMVCR 189

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            L  V++E R+L+ +G   ITLLGQ V+AWR      E+  F DLL +++E     R+ +
Sbjct: 190 PLENVLEEVRRLVRSGTNYITLLGQTVDAWRH-----ERRRFCDLLEAVAEEAP--RVWF 242

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
           TTSHP +M D  ++A G+ D ++  LHLPVQSGSDR+LK M+R + A  YR+ I+  R  
Sbjct: 243 TTSHPSNMEDRTLRAIGERDTIVKKLHLPVQSGSDRMLKMMHRGYGADRYRRKIEVFREH 302

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            PD  +S+D IVG PGET++D  AT+ L++   +  A+ FK+SPR GT  + M   V   
Sbjct: 303 VPDGTLSTDIIVGHPGETEEDHEATLRLIEDCQFDSAYIFKFSPRRGTEAAQMEGAVPPG 362

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVLNSKN 444
           V   R L + + + +     N   VG   E+ I +HG+ + G+ +G +    +V +++  
Sbjct: 363 VVQRRFLEVLRAVEQNAFRRNQRKVGGTEEIYI-RHGRSDSGRAIGETWSGHAVHVDT-E 420

Query: 445 HNIGDIIKVRITDVKISTLYG 465
              G+ ++ RI       LY 
Sbjct: 421 AGPGEYVRARIESAGPHVLYA 441


>gi|260885593|ref|ZP_05735307.2| 2-methylthioadenine synthetase [Prevotella tannerae ATCC 51259]
 gi|260851662|gb|EEX71531.1| 2-methylthioadenine synthetase [Prevotella tannerae ATCC 51259]
          Length = 524

 Score =  337 bits (865), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 119/453 (26%), Positives = 203/453 (44%), Gaps = 21/453 (4%)

Query: 17  IVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA 76
             D  +  ++   ++ GC++N  ++  + D     G   V + + AD+ ++NTC + + A
Sbjct: 83  AKDSLLAGKKAAFQTLGCKLNFAETSSLRDTLARYGVSPVEAGETADICIVNTCSVTDVA 142

Query: 77  AEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL 136
             K    + R+        +E  D  VVV GC AQ + E+I  R P V++V+G +    +
Sbjct: 143 DHKCRQAIHRL-------TREHPDAFVVVLGCYAQLQPEKIA-RFPGVDLVIGMEQKGDV 194

Query: 137 PELLERARFGKRVVDTDYSVEDKFE----RLSIVDGGYNRKRGVTAFLTIQEGCDKFCTF 192
              +      ++ ++   ++          +       ++      FL +Q+GC+ +CT+
Sbjct: 195 VRYIREGLAQRQALEKGENIHAAIALPTRDVRTFVPSCSKGDRTRYFLKVQDGCNYYCTY 254

Query: 193 CVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLY 252
           C +P  RG   + +++ +V +A  +   G  EI L G N     G        TF  L+ 
Sbjct: 255 CTIPLARGRSRNGTIASLVGQAEAVAAEGGKEIVLTGVNT----GDFGRSTGETFFQLIQ 310

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
           +L  +KG+ R R ++  P  ++D +I         MP+ H+P+QSGSD +L+ M RR+  
Sbjct: 311 ALDRVKGIERYRISSIEPNLLTDEIIDFCAQSRAFMPHFHIPLQSGSDDVLRLMRRRYDT 370

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
             +R+ I+++R+  PD  I  D IVG  GETD  F      ++ I  ++   F YS R G
Sbjct: 371 ELFRRKIEKVRAAIPDAFIGVDVIVGTRGETDAFFEDAYKFIEDIDISRLHVFSYSERPG 430

Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS 432
           T    +   VD   K  R   L     E++ +F    +G    VL E H KE   L G +
Sbjct: 431 TQALQIPHVVDAQTKQARSKRLLALSEEKRKAFFRRFIGTERPVLWE-HSKEGRPLHGFT 489

Query: 433 PWLQSVVLNSKNHNIGDIIKVRITD--VKISTL 463
                V           I +VR+ D      +L
Sbjct: 490 DNYIRV--EGGQSADNTIQRVRLGDFTADEESL 520


>gi|294011253|ref|YP_003544713.1| 2-methylthioadenine synthetase [Sphingobium japonicum UT26S]
 gi|292674583|dbj|BAI96101.1| 2-methylthioadenine synthetase [Sphingobium japonicum UT26S]
          Length = 468

 Score =  337 bits (865), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 128/491 (26%), Positives = 213/491 (43%), Gaps = 53/491 (10%)

Query: 1   MGLFIKLIGVAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD 60
           M L  K+   A +++  + +     +  + S GC   + DS R+     S GY+      
Sbjct: 1   MTLGAKIPMCAPIMATKIPEAP---KVGMVSLGCPKALVDSERILTKLRSDGYQMSADYA 57

Query: 61  DADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRR 120
            AD++++NTC   + A E+    +G              +  V+V GC+   E E I  +
Sbjct: 58  GADVVLVNTCGFLDSAKEESLEAIGEA---------IAENGRVIVTGCMGN-EAELIRAK 107

Query: 121 SPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFL 180
            P V  V G   Y  +   +  A            + + F  L + +GG        ++L
Sbjct: 108 FPQVLAVTGAHQYEAVVNAVHEA---------SPPIPNAFVDL-VPEGGLKLTPRHYSYL 157

Query: 181 TIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL 240
            I EGC+  C+FC++P  RG   SR +  V+ EA KL+  G  E+ ++ Q+ +A  G   
Sbjct: 158 KISEGCNHRCSFCIIPSLRGDLASRRIDAVLREAEKLVHAGTKELLIISQDTSA-YGVDT 216

Query: 241 DGE---------KCTFSDLLYSLSEI------KGLVRLRYTTSHPRDMSDCLIKAHGDLD 285
             E         +   +DL   L ++         VRL Y   +P       + A G   
Sbjct: 217 RHEARQWKGREVRAHMTDLARELGQLRTAEGTPPWVRLHYVYPYPHVDHVIPLMADG--- 273

Query: 286 VLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDD 345
           +L PYL +P Q  +  ILK+M R     +    I + R + PDIAI S F+VGFPGET+ 
Sbjct: 274 LLTPYLDIPFQHAAPSILKAMRRPANEAKVLDRIRKWRDICPDIAIRSSFVVGFPGETEA 333

Query: 346 DFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSF 405
           DF   +  +D+    +  +F++ P  G   +++   V E VK ER   + ++      + 
Sbjct: 334 DFDYLLQWLDEAQLDRVGAFRFEPVEGAAANDLPGAVPEEVKEERYQRIMERTAAISAAR 393

Query: 406 NDACVGQIIEVLIEKHGK-EKGKLVG-------RSPWLQSVVL---NSKNHNIGDIIKVR 454
             A VG+++ V+I++ G+ ++   +G        +P +   V      +    G I+ V 
Sbjct: 394 LQAKVGRVLPVIIDEVGEADEDGSIGATARSQADAPEIDGNVFLRDVGEGLAPGSILNVL 453

Query: 455 ITDVKISTLYG 465
           I D     LYG
Sbjct: 454 IEDADEHDLYG 464


>gi|256845484|ref|ZP_05550942.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Fusobacterium sp.
           3_1_36A2]
 gi|256719043|gb|EEU32598.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Fusobacterium sp.
           3_1_36A2]
          Length = 435

 Score =  337 bits (865), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 123/445 (27%), Positives = 223/445 (50%), Gaps = 20/445 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++    + GC++N Y++  +++    +GYE V   D +D+ ++N+C +   A  K  + L
Sbjct: 5   KKVAFHTLGCKVNQYETESIKNQLIKRGYEEVPFEDKSDIYIINSCTVTSIADRKTRNML 64

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R +       K   D  V+V GC AQ    EIL     V+ V+  +    +   +    
Sbjct: 65  RRAK-------KINPDAKVIVTGCYAQTNSREIL-EIEDVDFVIDNKNKSNIVNFVGAIE 116

Query: 145 --FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
               +R  + +   E +++           +    A++ IQ+GC+ FC++C +P+ RG  
Sbjct: 117 DISFEREKNGNIFQEKEYQEYEFATL----REMTRAYVKIQDGCNHFCSYCKIPFARGKS 172

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR    ++ E  KL+++G  E+ L+G +++A  GK    EK  F  LL  + +IK L R
Sbjct: 173 RSRKKENILKEIEKLVEDGFKEVILIGIDLSA-YGKDFK-EKDNFESLLEEILKIKDLKR 230

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R  + +P  ++D  I+   +   LMP+LH+ +QS  D +LK+M R + +   R+ + ++
Sbjct: 231 VRIGSVYPDKITDRFIELFKN-KNLMPHLHISLQSCDDTVLKNMRRNYGSSLIRESLLKL 289

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           +S   ++  ++D IVGFP E +  F+ T D++ +I ++    F+YS R GT  SNM  +V
Sbjct: 290 KSKVENMEFTADVIVGFPKEDEIMFQNTHDVIKEIEFSGLHIFQYSDREGTIASNMDGKV 349

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
           D   K +R   L    +E  ++     + + +EVL+E+  ++ G+  G S     V   S
Sbjct: 350 DAKTKKQRADRLDSLKQEMILNSRKKYLEKNLEVLVEE--EKDGEYFGYSQNYLRVKFRS 407

Query: 443 KN-HNIGDIIKVRITDVKISTLYGE 466
              + +  +I V+I  VK   L  E
Sbjct: 408 DEKNLVNKLINVKIKCVKNDILIAE 432


>gi|297202795|ref|ZP_06920192.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Streptomyces sviceus ATCC
           29083]
 gi|197713883|gb|EDY57917.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Streptomyces sviceus ATCC
           29083]
          Length = 498

 Score =  337 bits (865), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 125/490 (25%), Positives = 211/490 (43%), Gaps = 54/490 (11%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +   + + GC  N  DS  +     + G++ V    +AD+ V+NTC   E A +     L
Sbjct: 5   RTVALVTLGCARNEVDSEELAGRLEADGWDLVEDAAEADVAVVNTCGFVEAAKKDSVDAL 64

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
               +LK      G    VV  GC+A+  G+++    P  + V+G   Y  + + L+   
Sbjct: 65  LEANDLKG----HGRTQAVVAVGCMAERYGKDLAEALPEADGVLGFDDYADISDRLQTIL 120

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYN--------------------------------- 171
            G   +   ++  D+ + L I                                       
Sbjct: 121 SGG--IHAAHTPRDRRKLLPISPAQRQESAASVALPGHGPAAETPEAAPADLPEGLAPAS 178

Query: 172 ------RKR---GVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGV 222
                 R+R      A + +  GCD+ C+FC +P  RG  ISR  S V++E R L + GV
Sbjct: 179 GPRAPLRRRLDGSPVASVKLASGCDRRCSFCAIPSFRGSFISRRPSDVLNETRWLAEQGV 238

Query: 223 CEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHG 282
            EI L+ +N N   GK L G+      LL  L+E+ GL R+R +   P +M   LI    
Sbjct: 239 KEIMLVSEN-NTSYGKDL-GDIRLLESLLPELAEVDGLERVRVSYLQPAEMRPGLIDVLT 296

Query: 283 DLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGE 342
               ++PY  L  Q  +  +L++M R      + +++D IR   P+  + S+FIVGFPGE
Sbjct: 297 STPKVVPYFDLSFQHSAPGVLRAMRRFGDTDRFLELLDTIRGKAPEAGVRSNFIVGFPGE 356

Query: 343 TDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQ 402
           T+ D       ++         F YS   GT  +    ++DE+V AERL  + +   E  
Sbjct: 357 TEADLAELERFLNGARLDAIGVFGYSDEEGTEAATYENKLDEDVVAERLAHVSRLAEELV 416

Query: 403 VSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPWLQSVVL--NSKNHNIGDIIKVRITDV 458
               +  VG+ ++VL+E   +E   G+   ++P     VL  + +  ++G +++ ++   
Sbjct: 417 SQRAEERVGETVQVLVESVDEEGVYGRGAHQAPETDGQVLLTSGEGLSVGRMVEAKVVGT 476

Query: 459 KISTLYGELV 468
           +   L  E +
Sbjct: 477 EGVDLVAEPL 486


>gi|149915897|ref|ZP_01904421.1| RNA modification enzyme, MiaB-family, putative [Roseobacter sp.
           AzwK-3b]
 gi|149810220|gb|EDM70066.1| RNA modification enzyme, MiaB-family, putative [Roseobacter sp.
           AzwK-3b]
          Length = 459

 Score =  337 bits (865), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 120/459 (26%), Positives = 203/459 (44%), Gaps = 37/459 (8%)

Query: 23  VPQ----RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAE 78
           +P+       + S GC   + DS R+     ++GY        AD +++NTC   + A  
Sbjct: 20  MPRSGQPTIGMVSLGCPKALVDSERILTRLRAEGYGISPDYSGADAVIVNTCGFLDSAKA 79

Query: 79  KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPE 138
           +    +G              +  V+V GC+  AE + I    P V  V GP  Y ++ +
Sbjct: 80  ESLEAIGEALA---------ENGRVIVTGCLG-AEPDYITGVHPRVLAVTGPHQYEQVLD 129

Query: 139 LLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
            +  A              D F  L    G     R   ++L I EGC+  C FC++P  
Sbjct: 130 AVHAA---------VPPSPDPFVDLLPASGVKLTPRHY-SYLKISEGCNHKCKFCIIPDM 179

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW----RGKGLDGEKCTFSDLLYSL 254
           RG   SR    V+ EA+KL++NGV E+ ++ Q+ +A+    +    +G +   +DL   L
Sbjct: 180 RGKLSSRPAHAVIREAQKLVENGVRELLIISQDTSAYGVDIKHAEANGHRAHITDLARDL 239

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
             +   VRL Y   +P   +   + A G   +++PYL +P Q      L+ M R   A  
Sbjct: 240 GRLGAWVRLHYVYPYPHVRNLIPLMAEG---LVLPYLDIPFQHAHPETLRRMARPAAAAR 296

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
               I   RS  PDI + S FIVG+PGET+ +F+  +D +D+    +   FKY    G  
Sbjct: 297 TLDEIAAWRSDCPDITLRSTFIVGYPGETEQEFQTLLDWLDEAQLDRVGCFKYENVAGAR 356

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK---GKLVGR 431
            + + + V E VK +R     +K +    +   A VG + +V+++   ++     +  G 
Sbjct: 357 SNALPDHVPEEVKQDRWDRFMEKAQAISEAKLAAKVGSVQQVIVDDIDEDGIATCRTKGD 416

Query: 432 SPWLQSVVLNSKN---HNIGDIIKVRITDVKISTLYGEL 467
           +P +   +   +     ++GDI+ V + +     L+G L
Sbjct: 417 APEIDGCLFIDERTEGLSVGDIVTVEVDEAGDYDLWGSL 455


>gi|124514462|gb|EAY55975.1| RNA modification enzyme, MiaB family [Leptospirillum rubarum]
          Length = 483

 Score =  337 bits (864), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 119/445 (26%), Positives = 208/445 (46%), Gaps = 18/445 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +   + S GC  N+ D+  M      +G+  +  +++A++IV+NTC     A ++    L
Sbjct: 35  KTVGIVSLGCPKNLVDTETMIHSLSEKGFRVIPDLEEAEVIVVNTCSFVTDARKESIDTL 94

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             +   K +    G   ++V  GC+     EE+    P V++++ P     + ELL    
Sbjct: 95  LEMAQYKEN----GKAKILVGTGCLVSRYREELPGLLPEVDMLLSPSEEVSIGELLSSPE 150

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
               +  T   +       SI            A+L I EGCD  C+FC +P +RG+++S
Sbjct: 151 SKTSLPSTPLILPS-----SIPFRRKRLTPNHRAYLKISEGCDHTCSFCAIPLSRGLQVS 205

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R+   +++E R + D GV E+TL+ Q++  +     DGE      LL  +  I  +  +R
Sbjct: 206 RTRESLLEEVRMMADEGVREVTLIAQDLTRYGSDLEDGEG--LPRLLEEIDRIGRIPWVR 263

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
              ++P  ++D L+K   D   ++ YL +P Q  S  +LK MNR        ++IDRIR 
Sbjct: 264 LLYAYPTQVTDRLLKVIRDSSTILKYLDIPFQHVSGTVLKRMNRPGNRESTMRLIDRIRR 323

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           + PDI + + FIVGFPGET+++F    + +          F +S   GTP  +M  Q+  
Sbjct: 324 ILPDITLRTTFIVGFPGETEEEFLEIEEFLKWSRLDHVGVFPFSREEGTPSFDMDGQIPS 383

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-----KGKLVGRSPW-LQS- 437
            +K +R   L    +   +      +G+++ VLIE   ++      G+L G +P  +   
Sbjct: 384 RLKTQRRKRLMGVQKAISLEKKKDWLGKVMPVLIEGPSEQSPLILSGRLPGMAPDGIDGE 443

Query: 438 VVLNSKNHNIGDIIKVRITDVKIST 462
           V++ S   + G I+  ++  V    
Sbjct: 444 VLVLSGEASPGSIVSCKVKKVHAYD 468


>gi|297677249|ref|XP_002816517.1| PREDICTED: LOW QUALITY PROTEIN: CDK5 regulatory subunit-associated
           protein 1-like 1-like, partial [Pongo abelii]
          Length = 577

 Score =  337 bits (864), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 113/456 (24%), Positives = 209/456 (45%), Gaps = 19/456 (4%)

Query: 16  QIVDQCIVP--QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIR 73
           +      +P  Q+ +++++GC  N  D   M     + GY+   +  DADL +LN+C ++
Sbjct: 53  RPPSDSTIPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVK 112

Query: 74  EKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTY 133
             A +   + + + +              +VVAGCV QA+  +   +      ++G Q  
Sbjct: 113 NPAEDHFRNSIKKAQEENKK---------IVVAGCVPQAQPRQDYLKG---LSIIGVQQI 160

Query: 134 YRLPELLERARFGKRVVDT-DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTF 192
            R+ E++E    G  V     Y         + +     +K+ V + +++   C   CT+
Sbjct: 161 DRVVEVVEETIKGYSVSHLCKYKQNGARLHGARLRLKKKKKKCVVSLISLNTXCLNACTY 220

Query: 193 CVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLY 252
           C   + RG   S  + ++VD A++    GVCEI L  ++  A  G+ +     T    L 
Sbjct: 221 CKTKHARGNLASYPIDELVDRAKQSFQEGVCEIWLTSEDTGA-YGRDIGTNLPTLLWKLV 279

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
            +     ++RL  T           +    +   +  +LH+PVQS SD +L  M R +  
Sbjct: 280 EVIPEGAMLRLGMTNPPYILEHLEEMAKILNHPRVYAFLHIPVQSASDSVLMEMKREYCV 339

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
            ++++++D ++   P I I++D I GFPGETD DF+ T+ LV++  +   F  ++ PR G
Sbjct: 340 ADFKRVVDFLKEKVPGITIATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPG 399

Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS 432
           TP + M EQV   VK +R   L +       S  D  +G+  +VL+ +   +    V  +
Sbjct: 400 TPAAKM-EQVPAQVKKQRTKDLSRVF--HSYSPYDHKIGERQQVLVTEESFDSKFYVAHN 456

Query: 433 PWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            + + V++      +G +++V I +     + G+ V
Sbjct: 457 QFYEQVLVPKNPAFMGKMVEVDIYESGKHFMKGQPV 492


>gi|229586694|ref|YP_002845195.1| MiaB-like tRNA modifying enzyme [Rickettsia africae ESF-5]
 gi|228021744|gb|ACP53452.1| MiaB-like tRNA modifying enzyme [Rickettsia africae ESF-5]
          Length = 421

 Score =  337 bits (864), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 117/436 (26%), Positives = 208/436 (47%), Gaps = 32/436 (7%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V ++GC++N+Y+S  +       G +        ++ + NTC + + A ++    + + +
Sbjct: 14  VVTFGCRLNIYESEIIRKNLELSGID--------NVAIFNTCAVTKAAEKQARQAIRKAK 65

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
                  K   DL ++V GC AQ    ++    P V+ V+G +          +    K 
Sbjct: 66  -------KNNPDLKIIVTGCSAQTSP-QMYGNMPEVDKVIGNEEKLLPNYY--QITDAKI 115

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
            V+   SV++    L       +R     AF+ +Q GCD FCTFC++PY RG   S ++ 
Sbjct: 116 TVNDIMSVKETASHLVSSFDCKSR-----AFIQVQNGCDHFCTFCIIPYGRGKSRSVAIG 170

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
            +V++ + L+ NG  E+   G +V A  G  L G       +   L+ +  L RLR ++ 
Sbjct: 171 AIVEQVKHLVLNGFKEVVFTGVDVTA-YGSDLPGSPTFAQMIKRVLNLVPELKRLRLSSI 229

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
              ++ D L +     + +MP+ H+ +Q+G D ILK M RRH      +   ++R++RP+
Sbjct: 230 DVAEIDDELFELIAYSERIMPHFHISLQAGDDMILKRMKRRHNRASVIEFCRKLRAIRPE 289

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           ++  +D I GFP ET + F  T  L+ +        F YS R GTP + M  QV +N++ 
Sbjct: 290 VSFGADIIAGFPTETPEMFENTRQLISEAELQYLHVFPYSEREGTPAARMP-QVPKNIRK 348

Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIG 448
           ER   L+++ + Q   F    +GQ +E+L+E +       +  +     V L+ K   IG
Sbjct: 349 ERAAILRQEGQNQLTEFFKKHIGQKVELLVENNN------IAHTENFIPVKLD-KPLEIG 401

Query: 449 DIIKVRITDVKISTLY 464
            I K ++  ++ + + 
Sbjct: 402 QIFKAKLVAIEENYMK 417


>gi|313674192|ref|YP_004052188.1| miab-like tRNA modifying enzyme [Marivirga tractuosa DSM 4126]
 gi|312940890|gb|ADR20080.1| MiaB-like tRNA modifying enzyme [Marivirga tractuosa DSM 4126]
          Length = 439

 Score =  337 bits (864), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 115/431 (26%), Positives = 204/431 (47%), Gaps = 14/431 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++    + GC++N  ++  +  MF ++GYE+V+   + D+ ++NTC + E A +K    +
Sbjct: 2   KKVAFYTLGCKLNFSETSSISRMFENRGYEKVDFQANPDIFIINTCSVTENADKKCKKVV 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
              +       K   D  V + GC AQ + +EI      V+ V+G    ++L + L+   
Sbjct: 62  KEAK-------KINPDAFVTIIGCYAQLKPKEI-SEIKGVDAVLGAAEKFQLIDKLD--- 110

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G    D    +    +     +  ++       FL +Q+GC+  C FC +P  RG   S
Sbjct: 111 -GFTKKDAPQVLASDIKEAKSFNNAFSINDRTRTFLKVQDGCNYHCAFCTIPLARGKSRS 169

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
            ++  +V  A+++    V EI L G N   + G      K  F DL+  L  ++G+ R R
Sbjct: 170 DTIENIVKSAKQIASEDVKEIVLTGVNTGDF-GIQEGKRKERFVDLVKELDNVEGIDRFR 228

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
            ++  P  +++ +I+        +P+ H+P+QSGS+ IL+ M RR+    Y   + +I+ 
Sbjct: 229 ISSIEPNLLTNEIIEFVSQSKRFVPHFHVPLQSGSNIILRKMRRRYLRELYEDRVAKIKQ 288

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           + P   I  D IVGFPGETD++F  T   + ++  +    F YS R  T    M E V  
Sbjct: 289 LMPQCCIGVDVIVGFPGETDENFLETYHFLKELPVSYLHVFTYSERPNTDADEMDEVVPM 348

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
            V+ ER   L+    +++ +F +  + +   VL EK   + G + G +     VV     
Sbjct: 349 KVRNERSKMLRSLSEKKKRAFYEENLDREEVVLFEKDIHD-GLMEGFTDNYVRVVAKYDP 407

Query: 445 HNIGDIIKVRI 455
             I ++ KV++
Sbjct: 408 ILINELKKVKL 418


>gi|195584188|ref|XP_002081896.1| GD25482 [Drosophila simulans]
 gi|194193905|gb|EDX07481.1| GD25482 [Drosophila simulans]
          Length = 556

 Score =  337 bits (864), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 125/462 (27%), Positives = 210/462 (45%), Gaps = 27/462 (5%)

Query: 14  VSQIVDQCIVP--QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCH 71
               + + ++P  Q+ FVK++GC  N  DS  M     + GY      ++ADL +LN+C 
Sbjct: 58  PKPKIHESVIPGTQKVFVKTWGCAHNNSDSEYMAGQLAAYGYRLSGK-EEADLWLLNSCT 116

Query: 72  IREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ 131
           ++  + +   + +                  VVVAGCV Q   +           V+G Q
Sbjct: 117 VKNPSEDTFRNEIK---------SGMQNGKYVVVAGCVPQGAPKSDYLNG---LSVIGVQ 164

Query: 132 TYYRLPELLERARFGKRV--VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKF 189
              R+ E++E    G  V  +     V  +    + +     RK  +   ++I  GC   
Sbjct: 165 QIDRVVEVVEETLKGHSVQLLQNKKKVHGRRVAGAPLSLPKVRKNPLIEIISINSGCLNQ 224

Query: 190 CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSD 249
           CT+C   + RG   S    +VV+ AR+    G CEI L  ++  A  G+ +     +  +
Sbjct: 225 CTYCKTKHARGDLASYPPEEVVERARQSFAEGCCEIWLTSEDTGA-YGRDI---GSSLPE 280

Query: 250 LLYSLSE-IKGLVRLRYTTSHPRDMSDCLIKAHG--DLDVLMPYLHLPVQSGSDRILKSM 306
           LL+ L E I     LR   ++P  + + L +         +  +LH+PVQSGSD +L  M
Sbjct: 281 LLWKLVEVIPENCMLRVGMTNPPYILEHLEEVAKVMQHPRVYSFLHVPVQSGSDSVLGEM 340

Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
            R +   ++  ++D +R   P + I++D I GFP ET+DDF  TM L  K  +   F  +
Sbjct: 341 KREYCRQDFEHVVDFLRERVPGVTIATDIICGFPTETEDDFEETMTLCAKYRFPSLFINQ 400

Query: 367 YSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG 426
           + PR GTP + M E++  N+  +R   L               VG+I  VL+ +   +K 
Sbjct: 401 FFPRPGTPAAKM-ERIPANLVKKRTKRLTDLFY--SYEPYAERVGEIYTVLVTEVSHDKL 457

Query: 427 KLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
             VG +   + V+L  +++ +G  + VRIT     ++ GE++
Sbjct: 458 HYVGHNKSYEQVLLPMRDNLLGTRVNVRITSASKFSMVGEIL 499


>gi|189463972|ref|ZP_03012757.1| hypothetical protein BACINT_00307 [Bacteroides intestinalis DSM
           17393]
 gi|189438545|gb|EDV07530.1| hypothetical protein BACINT_00307 [Bacteroides intestinalis DSM
           17393]
          Length = 439

 Score =  337 bits (864), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 120/456 (26%), Positives = 213/456 (46%), Gaps = 20/456 (4%)

Query: 17  IVDQCIVPQRFFVK-SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREK 75
           ++D  I   +  V  + GC++N  ++  +  +    G       + AD+ V+NTC + E 
Sbjct: 1   MIDTNIFQNKTAVYYTLGCKLNFSETSTIGKILREAGVRTARKGEKADICVVNTCSVTEV 60

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135
           A +K    + R+       +K+     VVV GC AQ + E +  +   V+VV+G +    
Sbjct: 61  ADKKCRQAIHRL-------VKQHPGAFVVVTGCYAQLKPETVA-KIEGVDVVLGAEQKKD 112

Query: 136 LPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
           L + L   +  +       +++D            +R      FL +Q+GCD +C++C +
Sbjct: 113 LLQYLGNLQKNESGEAYASALKDIHSFAP----SCSRGDRTRYFLKVQDGCDYYCSYCTI 168

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
           P+ RG   + +++ +V++AR+    G  EI L G N+    G        TF DL+ +L 
Sbjct: 169 PFARGRSRNGTVASMVEQARQAAAEGGKEIVLTGVNI----GDFGKSTGETFFDLVKALD 224

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
           E++G+ R R ++  P  ++D +I+        MP+ H+P+QSGSD +LK M RR+    +
Sbjct: 225 EVEGIERYRISSIEPNLLTDEIIEFVSHSRSFMPHFHIPLQSGSDDVLKLMRRRYDTELF 284

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
              + R++ + PD  I  D IVG  GETD+ F    + +  +   Q   F YS R GT  
Sbjct: 285 ASKVQRVKEMMPDAFIGVDVIVGTRGETDEYFEQAYEFIKSLDVTQLHVFSYSERPGTQA 344

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWL 435
             +   V    K  R   L +   E+  +F    +GQ + VL+E+  K    + G +   
Sbjct: 345 LKIDHVVTPEEKHRRSQRLLELSDEKTHAFYARYIGQTMPVLLER-SKPGAPMHGFTANY 403

Query: 436 QSVVLNSKNHNIGDIIKVRITDV--KISTLYGELVV 469
             V +   +     ++ VR+ +     + L+G L++
Sbjct: 404 IRVEVPHNDTLDNQVVSVRLGNFNEDGTALHGTLLL 439


>gi|157964499|ref|YP_001499323.1| MiaB-like tRNA modifying enzyme [Rickettsia massiliae MTU5]
 gi|157844275|gb|ABV84776.1| MiaB-like tRNA modifying enzyme [Rickettsia massiliae MTU5]
          Length = 421

 Score =  337 bits (864), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 117/436 (26%), Positives = 207/436 (47%), Gaps = 32/436 (7%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V ++GC++N+Y+S  +       G +        ++ + NTC + + A ++    + + +
Sbjct: 14  VVTFGCRLNIYESEIIRKNLELSGID--------NVAIFNTCAVTKAAEKQARQAIRKAK 65

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
                  K   DL ++V GC AQ    ++    P V+ V+G +          +    K 
Sbjct: 66  -------KNNPDLKIIVTGCSAQTSP-QMYGNMPEVDKVIGNEEKLLPNYY--QITDAKI 115

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
            V+   SV++    L     G +R     AF+ +Q GCD FCTFC++PY RG   S ++ 
Sbjct: 116 TVNDIMSVKETASHLVSSFDGKSR-----AFIQVQNGCDHFCTFCIIPYGRGKSRSVAIG 170

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
            +  + + L+ NG  E+   G +V A  G  L G       +   L+ +  L RLR ++ 
Sbjct: 171 AIAAQVKHLVLNGFKEVVFTGVDVTA-YGSDLPGNPTFAQMIKRVLNLVPELKRLRLSSI 229

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
              ++ D L +     + +MP+ H+ +Q+G D ILK M RRH      +   ++R++RP+
Sbjct: 230 DVAEIDDELFELIAYSERIMPHFHISLQAGDDMILKRMKRRHNRANVIEFCRKLRAIRPE 289

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           ++  +D I GFP ET + F  T  L+ +        F YS R GTP + M  QV +N++ 
Sbjct: 290 VSFGADIIAGFPTETHEMFENTRKLISEAELQYLHVFPYSEREGTPAARMP-QVPKNIRK 348

Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIG 448
           ER   L+++ + Q   F    +GQ +E+L+E +       +  +     V L+ K   IG
Sbjct: 349 ERAKILRQEGQNQLTEFFKKHIGQKVELLVENNN------IAHTENFIPVKLD-KPLEIG 401

Query: 449 DIIKVRITDVKISTLY 464
            I K ++  ++ + + 
Sbjct: 402 QIFKAKLVGIEENYMK 417


>gi|291454518|ref|ZP_06593908.1| conserved hypothetical protein [Streptomyces albus J1074]
 gi|291357467|gb|EFE84369.1| conserved hypothetical protein [Streptomyces albus J1074]
          Length = 490

 Score =  337 bits (864), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 125/487 (25%), Positives = 204/487 (41%), Gaps = 52/487 (10%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +   + + GC  N  DS  +     + G++ V   + AD+ V+NTC   E A +     L
Sbjct: 5   RTVALVTLGCARNEVDSEELAGRLEADGWQLVEDAEAADVAVVNTCGFVEAAKKDSVDAL 64

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
               +LK      G    VV  GC+A+  G+E+    P  + V+G   Y  + + L+   
Sbjct: 65  LEANDLKAQ----GRTQAVVAVGCMAERYGKELAEALPEADGVLGFDDYADISDRLQTIL 120

Query: 145 FGKRVVDTDYSVEDKFERLSI-----------------------------------VDGG 169
            G   +   ++  D+ + L I                                       
Sbjct: 121 GGG--IHASHTPRDRRKLLPISPAERQDSAVALPGHAQEPAAAPADLPDGLAPASGPRAP 178

Query: 170 YNRKRG--VTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITL 227
             R+ G    A + +  GCD+ C+FC +P  RG  ISR  S V+ E R L   GV EI L
Sbjct: 179 LRRRLGTSPVASVKLASGCDRRCSFCAIPSFRGSFISRRPSDVLQETRWLAGQGVKEIML 238

Query: 228 LGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL 287
           + +N N   GK L G+      LL  L+E+ G+ R+R +   P +M   LI        +
Sbjct: 239 VSEN-NTSYGKDL-GDIRLLETLLPELAEVDGIERVRVSYLQPAEMRPGLIDVLTSTPKV 296

Query: 288 MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDF 347
            PY  L  Q  +  +L++M R      +  ++++IR+  P+  + S+FIVGFPGE++ D 
Sbjct: 297 APYFDLSFQHSAPGVLRAMRRFGDTDRFLGLLEQIRAKAPEAGVRSNFIVGFPGESEADV 356

Query: 348 RATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFND 407
                 +          F YS   GT  +    ++ E   AERL  + +   E      D
Sbjct: 357 AELERFLTGARLDAIGVFGYSDEDGTEAAGYEGKLPEEEVAERLARVSRLAEELVSQRAD 416

Query: 408 ACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVVL--NSKNHNIGDIIKVRITDVKIS 461
             VG+ +EVL+E   +E+G  VGR    +P     +L  +  +   G ++  ++   +  
Sbjct: 417 ERVGETVEVLVESVDEEEG-AVGRAAHQAPETDGQILFTSGADLTPGRMVVAKVVGTEGV 475

Query: 462 TLYGELV 468
            L  E +
Sbjct: 476 DLVAEPL 482


>gi|298377685|ref|ZP_06987636.1| Fe-S oxidoreductase [Bacteroides sp. 3_1_19]
 gi|298265388|gb|EFI07050.1| Fe-S oxidoreductase [Bacteroides sp. 3_1_19]
          Length = 444

 Score =  337 bits (864), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 124/438 (28%), Positives = 206/438 (47%), Gaps = 17/438 (3%)

Query: 17  IVDQCIVP-QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREK 75
           ++DQ +   ++    + GC++N  ++  +  +   QG  +V   + AD+ V+NTC + E 
Sbjct: 1   MIDQTVFNNKKAAYYTLGCKLNFAETSTIGKLLAEQGVRKVRPGEKADICVVNTCSVTEL 60

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135
           A +K    + RI        K+     +VV GC AQ + EE+      V++V+G +    
Sbjct: 61  ADKKCRQAIRRI-------SKQHPGAFIVVTGCYAQLKPEEV-SHIEGVDLVLGAEQKLE 112

Query: 136 LPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
           + + LE     +       S        S      +R R    FL +Q+GCD +C++C +
Sbjct: 113 ILQYLENLEKKENGGAVIASQSKDIRSFSPSCSADDRTR---HFLKVQDGCDYYCSYCTI 169

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
           P+ RG   + +++ +V++A+++   G  EI L G N+    G        TF DL+ +L 
Sbjct: 170 PFARGRSRNGTIASMVEQAQEVARKGGKEIVLTGVNI----GDFGKSTDETFIDLIRALD 225

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
           E+ G+VR R ++  P  ++D  I          P+ H+P+QSGSD +L+ M RR+    +
Sbjct: 226 EVDGIVRYRISSIEPNLITDEAIDFVAHSKRFAPHFHIPLQSGSDAVLQLMRRRYDTALF 285

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
           R  I++I+ V P   I  D IVG  GETD+ F      +  +  +Q   F YS R GT  
Sbjct: 286 RHKIEKIKEVMPHAFIGVDVIVGTRGETDEYFEEARQFIGSLDISQLHVFSYSERPGTQA 345

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWL 435
             +   VD   K  R   L      +  +F +A +GQ   VL E H K+ GK+ G +   
Sbjct: 346 LKIDHVVDPKTKHARSQQLLDISDRKLHAFYEAHIGQEANVLFE-HTKKDGKMHGFTENY 404

Query: 436 QSVVLNSKNHNIGDIIKV 453
             V +      + +  KV
Sbjct: 405 IKVEIPYDATLVNETRKV 422


>gi|19922432|ref|NP_611207.1| CG6550 [Drosophila melanogaster]
 gi|122087244|sp|Q7K4W1|CDKAL_DROME RecName: Full=CDKAL1-like protein
 gi|7302795|gb|AAF57870.1| CG6550 [Drosophila melanogaster]
 gi|15291579|gb|AAK93058.1| GH28477p [Drosophila melanogaster]
 gi|220945770|gb|ACL85428.1| CG6550-PA [synthetic construct]
          Length = 552

 Score =  337 bits (864), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 126/462 (27%), Positives = 214/462 (46%), Gaps = 27/462 (5%)

Query: 14  VSQIVDQCIVP--QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCH 71
               + + ++P  Q+ FVK++GC  N  DS  M     + GY      ++ADL +LN+C 
Sbjct: 58  PKPTIHESVIPGTQKVFVKTWGCAHNNSDSEYMAGQLAAYGYRLSGK-EEADLWLLNSCT 116

Query: 72  IREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ 131
           ++  + +   + +        S ++ G    VVVAGCV Q   +           V+G Q
Sbjct: 117 VKNPSEDTFRNEI-------ESGMRNGKH--VVVAGCVPQGAPKSDYLNG---LSVIGVQ 164

Query: 132 TYYRLPELLERARFGKRV--VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKF 189
              R+ E++E    G  V  +     V  +    + +     RK  +   ++I  GC   
Sbjct: 165 QIDRVVEVVEETLKGHSVQLLQNKKKVHGRRVAGAPLSLPKVRKNPLIEIISINSGCLNQ 224

Query: 190 CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSD 249
           CT+C   + RG   S    +VV+ AR+    G CEI L  ++  A  G+ +     +  +
Sbjct: 225 CTYCKTKHARGDLASYPPEEVVERARQSFAEGCCEIWLTSEDTGA-YGRDI---GSSLPE 280

Query: 250 LLYSLSE-IKGLVRLRYTTSHPRDMSDCLIKA--HGDLDVLMPYLHLPVQSGSDRILKSM 306
           LL+ L E I     LR   ++P  + + L +         +  +LH+PVQSGSD +L  M
Sbjct: 281 LLWQLVEVIPEHCMLRVGMTNPPYILEHLEEVANVLQHPRVYSFLHVPVQSGSDSVLGEM 340

Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
            R +   ++  ++D +R   P + I++D I GFP ET+DDF  TM L  K  +   F  +
Sbjct: 341 KREYCRQDFEHVVDFLRERVPGVTIATDIICGFPTETEDDFEETMTLCAKYRFPSLFINQ 400

Query: 367 YSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG 426
           + PR GTP + M +++  N+  +R   L               VG+I  VL+ +   +K 
Sbjct: 401 FFPRPGTPAAKM-DRIPANLVKKRTKRLTDLFY--SYEPYADRVGEIYTVLVTEVSHDKL 457

Query: 427 KLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
             VG +   + V+L  +++ +G  + VRIT     ++ GE++
Sbjct: 458 HYVGHNKSYEQVLLPMRDNLLGTRVHVRITSASKFSMVGEIL 499


>gi|163785016|ref|ZP_02179751.1| hypothetical protein HG1285_08916 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159879716|gb|EDP73485.1| hypothetical protein HG1285_08916 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 436

 Score =  337 bits (864), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 121/433 (27%), Positives = 219/433 (50%), Gaps = 21/433 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    + GC+MN +++  +E+ F  +GYE  +  D AD+ V+NTC +   A       L 
Sbjct: 5   KVAFTTLGCRMNQFETSALEEKFNEKGYEIKSFDDVADIYVVNTCTVTNDADRTSRKVLR 64

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           + +       +   + +VV  GC AQ + EE+  +   V++V+G      + E++E    
Sbjct: 65  QAK-------RRNPNAVVVATGCYAQVKPEELA-KIEEVDIVIGNSHKTAVYEIVENYLN 116

Query: 146 GK---RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            K   +V   +   +++FE   I         G    L +QEGC+ FC+FC++P+ RG  
Sbjct: 117 EKNQDKVFIDNIFRQNEFETFQISTFY----EGARPILKVQEGCNSFCSFCIIPFARGKV 172

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            S  + ++  + + L++NG  E+ L G  ++ +   G D ++    +LL  L +I GL R
Sbjct: 173 RSAKIDEIEKQVKILVENGFKEVVLTGTQLSQY---GYDHKEGYLYNLLKRLIKIDGLYR 229

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R ++    ++ + L+      + + P+ HL +QS SD++LK M R +T  +Y ++++ I
Sbjct: 230 VRLSSMGINEIDEKLLDLITSEEKIAPHFHLSLQSASDKVLKDMKRNYTLSQYIKVVNEI 289

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
              RPD A+ +D I GFP ET ++F  ++ +++++ +A    F YS R GT      ++V
Sbjct: 290 VKRRPDTAVGTDIITGFPTETREEFEKSLKVIEELPFAYIHVFTYSQRDGTSAVKFGDRV 349

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
               K ER   L++    +   F    + + +EVLI   G+++GK +G +     V  NS
Sbjct: 350 HPKEKKERTRILREISERKNYEFRKKHLNKKLEVLI--IGEKEGKKIGLTGNYIHVRFNS 407

Query: 443 KNHNIGDIIKVRI 455
              NI  +  V I
Sbjct: 408 DK-NINQLAYVNI 419


>gi|240850637|ref|YP_002972037.1| hypothetical protein Bgr_10900 [Bartonella grahamii as4aup]
 gi|240267760|gb|ACS51348.1| hypothetical protein Bgr_10900 [Bartonella grahamii as4aup]
          Length = 437

 Score =  337 bits (864), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 127/460 (27%), Positives = 206/460 (44%), Gaps = 36/460 (7%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           +V  R    S GC   + DS R+     S+GYE       AD++++NTC   + A  +  
Sbjct: 1   MVAPRISFVSLGCPKALVDSERIITRLRSEGYEISRQHQGADVVIVNTCGFLDSARRESL 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           + +                  V+V GC+  A+ + I +  P V  +  PQ Y  + E + 
Sbjct: 61  ANIDEALKKNGK---------VIVTGCLG-ADPDVIRQTYPNVLAITKPQAYESVIEAVH 110

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
            A            V D F  L    G     R   A+L I EGC   C+FC++P  RG 
Sbjct: 111 TA---------IPPVHDPFLDLVPPQGIRLTPRHY-AYLKISEGCSNQCSFCIIPTLRGD 160

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE--------KCTFSDLLYS 253
             SR +S V+ EA KL+  GV E+ ++ Q+ +A+       E        K  F DL   
Sbjct: 161 LTSRPISDVLREAEKLVQAGVKELLVISQDTSAYGIDLKYLENSWKDRTIKTKFFDLCRE 220

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
           L ++   +R+ Y   +P      +I+       ++PYL +P Q  S  IL+ M R     
Sbjct: 221 LGDMGIWIRMHYVYPYPHVD--EVIELMAA-KKILPYLDIPFQHASPAILRHMKRPALIE 277

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
           +  + I++ R + PD+ + S FIVGFPGET++DF   ++ +++    +A  FKY    G 
Sbjct: 278 KTNRRIEKWRKICPDLTLRSTFIVGFPGETNEDFNILLEWLEEAKIERAGCFKYEEVKGA 337

Query: 374 PGSNM-LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE--KGKLVG 430
             +++ LE + E VK  R      K ++         +G+ ++VLI++   +  KG+   
Sbjct: 338 AANDLGLENIPEEVKENRWHRFMAKQQQISTHLLKKKIGKRLQVLIDESQGKVAKGRSQY 397

Query: 431 RSPWLQSVVLNSK--NHNIGDIIKVRITDVKISTLYGELV 468
            +P +  VV  S      +G+ + V+I       LYG  V
Sbjct: 398 DAPEIDGVVHISSRRPLRVGEFVSVKIEQSDAYDLYGVAV 437


>gi|291238003|ref|XP_002738926.1| PREDICTED: CDK5 regulatory subunit-associated protein 1-like 1-like
           [Saccoglossus kowalevskii]
          Length = 544

 Score =  337 bits (864), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 127/460 (27%), Positives = 219/460 (47%), Gaps = 25/460 (5%)

Query: 15  SQIVDQCIVP--QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHI 72
            +     ++P  Q  +VK++GC  N  DS  M     S GY+   + + ADL +LN+C +
Sbjct: 38  EKPNTDSVIPGCQSVYVKTWGCSHNNSDSEYMAGQLASYGYKITETEEAADLWLLNSCTV 97

Query: 73  REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT 132
           +  A +   + + + R           +  +V+AGCV QA+ +  L     V+VV G Q 
Sbjct: 98  KTPAEQHFQNSIIKARE---------QNKYMVLAGCVPQAQPK--LDYINGVSVV-GVQQ 145

Query: 133 YYRLPELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCT 191
             R+ E++E    G  V +      + K    + ++    RK  +   + I  GC   CT
Sbjct: 146 IDRIVEVVEETFKGHTVRLFGQKKKDGKKIGGAPLNLPKIRKNPLIEIIAINTGCLNACT 205

Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLL 251
           +C   Y RG   S   S++V  A++  + GVCE+ L  ++  A  GK +     T  +LL
Sbjct: 206 YCKTKYARGELGSYQPSELVARAKQSFEEGVCELWLTSEDTGA-YGKDI---GVTIVELL 261

Query: 252 YSLSE-IKGLVRLRYTTSHPRDMSDCL--IKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
           + L E I     +R   ++P  + + L  I        +  +LH+PVQSGSD +L  M R
Sbjct: 262 WQLVEVIPDGCMMRIGMTNPPYILEHLEEISKILKHPRVYSFLHVPVQSGSDSVLMDMKR 321

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
            +   +++ + + ++   P + I++D I GFP ETD+DF  TM LV++  +   F  +Y 
Sbjct: 322 EYCVDDFKHVCNFLKKRVPGVTIATDIICGFPTETDEDFDETMQLVEEYKFPSLFINQYF 381

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL 428
           PR GTP + M  +V      +R   L +  ++      D  VG+   VL+ +   +    
Sbjct: 382 PRPGTPSAKMT-RVPTREVKKRTKKLSQLFQD--YRPYDHKVGEEQHVLVTEDSHDGRFY 438

Query: 429 VGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           V  + +   V++  + + +G +IKV+IT      L G+++
Sbjct: 439 VAHNKFYDQVLVPKEENLLGKMIKVKITSTGKHYLIGDIL 478


>gi|258652985|ref|YP_003202141.1| MiaB-like tRNA modifying enzyme YliG [Nakamurella multipartita DSM
           44233]
 gi|258556210|gb|ACV79152.1| MiaB-like tRNA modifying enzyme YliG [Nakamurella multipartita DSM
           44233]
          Length = 485

 Score =  337 bits (864), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 125/473 (26%), Positives = 210/473 (44%), Gaps = 44/473 (9%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERV-NSMDDADLIVLNTCHIREKAAEKVYSFL 84
           R  + + GC  N  DS  +     + GY+ V +  + AD+IV+NTC   + A +     +
Sbjct: 10  RVGLVTLGCARNDVDSSELAGRLQADGYQLVTDEAEPADVIVVNTCAFVDAAKKDSIDAV 69

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
               +             VV  GC+A+  G E+ +  P  + V+G   Y RL  LL    
Sbjct: 70  LAAAD---------TGAKVVAVGCMAERYGAELAQALPEADAVLGFDAYPRLGSLLGDVL 120

Query: 145 FGKRVVDTDYSVEDKFERLSIVD------------------GGYNRK---RGVTAFLTIQ 183
            G R     ++  D+   L I                        R     G  A L I 
Sbjct: 121 DGHRP--AAHTPVDRRTLLPISPVARAGAVSGVSVPGHAAGPVVPRTLLDEGPVAPLKIA 178

Query: 184 EGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
            GCD+ CTFC +P  RG  +SR  ++++ EA  L+D GV E+ L+ +N  +  GK L G+
Sbjct: 179 SGCDRRCTFCAIPSFRGAFVSRPPAEILQEAAWLVDQGVREVVLVSENTTS-YGKDLPGD 237

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
           +   +DLL  L+++ GL R+R +   P +    LI+A  ++  +  Y  +  Q  S  +L
Sbjct: 238 RQ-LADLLAGLAQVPGLTRVRLSYLQPAETRPWLIQAIAEIPAVADYFDMSFQHSSPAVL 296

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           + M R  +   + Q++++IR   PD  I S+ IVGFPGET++D       +         
Sbjct: 297 RRMRRYGSTDSFLQLVEQIRVAAPDAGIRSNVIVGFPGETEEDLAELERFLVGARLDAVG 356

Query: 364 SFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK 423
            F YS   GT    +  + DE+V AER+  + + + E      +  +G  + V++++   
Sbjct: 357 VFGYSDEDGTEALGLAGKHDEDVIAERVERITELVEELSAQRAEDRIGSQLLVMVDRAAG 416

Query: 424 E---KGKLVGR----SPWLQSVV--LNSKNHNIGDIIKVRITDVKISTLYGEL 467
           +    G  VGR    +P +   V  +  +    G++++  +TD     L   +
Sbjct: 417 DPDGDGMAVGRGDHQAPDVDGEVRLIADRVLRPGELVRCTVTDSDGIDLVATV 469


>gi|171058738|ref|YP_001791087.1| ribosomal protein S12 methylthiotransferase [Leptothrix cholodnii
           SP-6]
 gi|238066365|sp|B1Y223|RIMO_LEPCP RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|170776183|gb|ACB34322.1| MiaB-like tRNA modifying enzyme YliG [Leptothrix cholodnii SP-6]
          Length = 466

 Score =  337 bits (864), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 119/470 (25%), Positives = 198/470 (42%), Gaps = 49/470 (10%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R    S GC   + DS  +     ++GY    +   ADL+++NTC   + A  +    +G
Sbjct: 19  RIGFVSLGCPKALTDSELILTQLSAEGYATSKTFQGADLVIVNTCGFIDDAVRESLDTIG 78

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEE----ILRRSPIVNVVVGPQTYYRLPELLE 141
                            V+V GC+    G+     + +  P V  V GP     + + + 
Sbjct: 79  EALAENGK---------VIVTGCLGAKTGDGGGNLVRQMHPSVLAVTGPHATQEVMDAVH 129

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           +               D F  L +   G        A+L I EGC+  C+FC++P  RG 
Sbjct: 130 QH---------VPKPHDPFVDL-VPPAGIKLTPKHYAYLKISEGCNHRCSFCIIPSMRGD 179

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYS 253
            +SR +  V+ EA++L + GV E+ ++ Q+ +A+      R    DG+  K    DL+  
Sbjct: 180 LVSRPIGDVLTEAQRLFEGGVKELLVISQDTSAYGVDVKYRTGFWDGKPVKTRMLDLVAQ 239

Query: 254 LSEI----KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
           L E+       VRL Y   +P       + A G   +++PYL +P Q     +LK M R 
Sbjct: 240 LGELARKHGAWVRLHYVYPYPHVDEVLPLMAEG---LVLPYLDVPFQHAHPDVLKRMKRP 296

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369
            +     + + + R   P I + S FI GFPGET+ +F   +D + +    +A  F YSP
Sbjct: 297 ASGERNLERLLKWREACPQIVVRSTFIAGFPGETEAEFEYLLDFLKEAQIDRAGCFAYSP 356

Query: 370 RLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKH---GKEK- 425
             G P + +   + + V+ ER             +     VG  ++VL++     G++  
Sbjct: 357 IEGAPANLLDGALPDAVREERRARFMAVAEAVSTAKLQRRVGSSMQVLVDSAPAMGRKGG 416

Query: 426 -GKLVGRSPWLQSVVLN------SKNHNIGDIIKVRITDVKISTLYGELV 468
            G+    +P +   V        SK   +G+  +VRI   +   L GEL+
Sbjct: 417 VGRSYADAPEIDGTVKILPPSKASKTMKVGEFSRVRIVGSQGHDLIGELI 466


>gi|196007898|ref|XP_002113815.1| hypothetical protein TRIADDRAFT_26388 [Trichoplax adhaerens]
 gi|190584219|gb|EDV24289.1| hypothetical protein TRIADDRAFT_26388 [Trichoplax adhaerens]
          Length = 529

 Score =  337 bits (864), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 111/462 (24%), Positives = 207/462 (44%), Gaps = 29/462 (6%)

Query: 15  SQIVDQCIVP--QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHI 72
            + V   I+P  Q  +++++GC  N  D   M     S GY+     ++ADL +LN+C +
Sbjct: 57  EKAVGDSIIPGTQGIYIRTWGCSHNKSDGEYMAGQLSSYGYKITEIPEEADLWLLNSCAV 116

Query: 73  REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNV--VVGP 130
           +  A +  Y+ + + + LK           +V+AGCV Q +      R P+++   VVG 
Sbjct: 117 KNPAEDSFYNDIRKAKELKK---------YLVLAGCVPQGQK-----RHPLMDGISVVGV 162

Query: 131 QTYYRLPELLERARFGKRVVDTDYSVED-KFERLSIVDGGYNRKRGVTAFLTIQEGCDKF 189
           Q   R+ E++E    G  V       ++ K    + ++    RK  +   + I  GC   
Sbjct: 163 QQIDRVVEVVEETLKGHSVRLFGQKRKNGKKLGGAPLNLPKIRKNPLVEIIAINTGCLNA 222

Query: 190 CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSD 249
           CT+C   + RG   S  +  +V+ A+   + GV EI +  ++  A  G  +     +  D
Sbjct: 223 CTYCKTKHARGDLGSYPIEDIVERAKTAFNEGVAEIWITSEDTGA-YGIDI---GVSLPD 278

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGD---LDVLMPYLHLPVQSGSDRILKSM 306
           LL+ L ++     +              ++          +  +LH+PVQ+GSD++L  M
Sbjct: 279 LLWQLVKVIPDGAMLRIGMTNPPYILEHLEEMAKILSHPRVYSFLHVPVQAGSDKVLYDM 338

Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
            R +T  ++ ++++ +    P I I++D I GFP E  DDF  T+ L+++  +   F  +
Sbjct: 339 RREYTVTDFEKVVNYLSDKVPGITIATDIICGFPTEEKDDFAKTLRLIERHKFPSVFINQ 398

Query: 367 YSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG 426
           + PR GTP + M +++       R   L +  +       D  +G+   +LI +   +  
Sbjct: 399 FYPRPGTPAAKM-KRIPTEEVKNRSRELTQLFK--SYRPYDHKLGERQRILITELSHDGN 455

Query: 427 KLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
             VG + +   V++      +G  ++V I +     L G +V
Sbjct: 456 HFVGHNKFYDQVLVPMDMDLLGKTVEVDIIETGKHYLMGRVV 497


>gi|237742211|ref|ZP_04572692.1| Fe-S oxidoreductase [Fusobacterium sp. 4_1_13]
 gi|229429859|gb|EEO40071.1| Fe-S oxidoreductase [Fusobacterium sp. 4_1_13]
          Length = 435

 Score =  336 bits (863), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 123/445 (27%), Positives = 224/445 (50%), Gaps = 20/445 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++    + GC++N Y++  +++    +GYE V   D +D+ ++N+C +   A  K  + L
Sbjct: 5   KKVAFHTLGCKVNQYETESIKNQLIKRGYEEVPFEDKSDIYIINSCTVTSIADRKTRNML 64

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R +       K   D  V+V GC AQ    EIL     V+ V+  +    +   +    
Sbjct: 65  RRAK-------KINPDAKVIVTGCYAQTNSREIL-EIEDVDFVIDNKNKSNIVNFVGAIE 116

Query: 145 --FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
               +R  + +   E +++           +    A++ IQ+GC+ FC++C +P+ RG  
Sbjct: 117 DISFEREKNGNIFQEKEYQEYEFATL----REMTRAYVKIQDGCNHFCSYCKIPFARGKS 172

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR    ++ E  KL+++G  E+ L+G +++A  GK    EK  F  LL  + +IK L R
Sbjct: 173 RSRKKENILKEIEKLVEDGFKEVILIGIDLSA-YGKDFK-EKDNFESLLEEILKIKDLKR 230

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R  + +P  ++D  I+   +   LMP+LH+ +QS  D +LK+M R + +   R+ + ++
Sbjct: 231 VRIGSVYPDKITDRFIELFKN-KNLMPHLHISLQSCDDTVLKNMRRNYGSSLIRESLLKL 289

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           +S   ++  ++D IVGFP E +  F+ T D++ +I ++    F+YS R GT  SNM  +V
Sbjct: 290 KSKVENMEFTADVIVGFPKEDEIMFQNTHDVIKEIEFSGLHIFQYSDREGTIASNMDGKV 349

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL-N 441
           D   K +R   L    +E  ++     + + +EVL+E+  ++ G+  G S     V   +
Sbjct: 350 DAKTKKQRADRLDSLKQEMILNSRKKYLEKSLEVLVEE--EKDGEYFGYSQNYLRVKFRS 407

Query: 442 SKNHNIGDIIKVRITDVKISTLYGE 466
            K + +  +I V+I  VK   L  E
Sbjct: 408 DKKNLVNKLINVKIKCVKNDILIAE 432


>gi|325298142|ref|YP_004258059.1| MiaB-like tRNA modifying enzyme [Bacteroides salanitronis DSM
           18170]
 gi|324317695|gb|ADY35586.1| MiaB-like tRNA modifying enzyme [Bacteroides salanitronis DSM
           18170]
          Length = 471

 Score =  336 bits (863), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 120/445 (26%), Positives = 200/445 (44%), Gaps = 19/445 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++    + GC++N  ++  +  M    G   V   + AD+ ++NTC + E A +K    +
Sbjct: 43  KKAVYYTLGCKLNFAETSTVGKMLKEAGVRTVRPGEKADICIVNTCSVTEVADKKCRQAI 102

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R+       +K      VVV GC AQ + E++      V++V+G +    L + L    
Sbjct: 103 HRL-------VKNHPGAFVVVMGCYAQLKPEQVAD-IEGVDLVLGAEQKGDLMKYLGNLE 154

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
                     +V+D    +       +R      FL +Q+GCD FC++C +P+ RG   +
Sbjct: 155 KHAHGEAVTTAVKDIRTFVP----SCSRGDRTRYFLKVQDGCDYFCSYCTIPFARGRSRN 210

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
             ++ +V++AR++ + G  EI L G N+    G        TF  L+ +L +++G+ R R
Sbjct: 211 GKIADLVEQARQVAEEGGKEIVLTGVNI----GDFGKTTGETFFSLVQALDKVEGIERYR 266

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
            ++  P  ++D +I         MP+ H+P+QSG D +LK M RR+    +   +  I+S
Sbjct: 267 ISSIEPNLLTDEIIAFVAQSKRFMPHFHIPLQSGCDEVLKLMRRRYDTQLFASKVHTIKS 326

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             PD  I  D IVG  GET + F    + +  +   Q   F YS R GT    +   V  
Sbjct: 327 YMPDAFIGVDVIVGTRGETPEYFEKAYEFIQGLDVTQLHVFSYSERPGTQALKIDYVVSP 386

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
             K  R   L     E+  +F    +GQ   VL+E H K    + G +P    V L    
Sbjct: 387 EDKHARSQRLLALSEEKTHAFYARHIGQEATVLVE-HAKAGMPMHGFTPNYIRVELERNE 445

Query: 445 HNIGDIIKVRITD--VKISTLYGEL 467
                +++VR+ D     + L G L
Sbjct: 446 ALDNQMVRVRLGDFNADGTALQGTL 470


>gi|308800958|ref|XP_003075260.1| Predicted Fe-S oxidoreductase (ISS) [Ostreococcus tauri]
 gi|116061814|emb|CAL52532.1| Predicted Fe-S oxidoreductase (ISS) [Ostreococcus tauri]
          Length = 548

 Score =  336 bits (863), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 154/502 (30%), Positives = 236/502 (47%), Gaps = 69/502 (13%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
            +R FV++YGCQMN  DS  +  +     +   +S  DA ++++NTC IRE A  +V++ 
Sbjct: 42  KERVFVETYGCQMNANDSDVVRALLVEAKHAIASSASDATVVLVNTCAIRENAESRVWTR 101

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPI-VNVVVGPQTYYRLPELLER 142
           L ++R  + +         V V GC+A+    +IL       ++VVGP  Y  +  LL  
Sbjct: 102 LRQLRAERRAP--GSRLRAVGVLGCMAERLKGKILSAEEGLADMVVGPDAYRDVVRLLRV 159

Query: 143 ARFG---KRVVDTDYSVEDKFERLSI--------VDGGYNRKRG--VTAFLTIQEGCDKF 189
           AR     +R  +T  +  D  +R+++         D    R       A++++  GCD  
Sbjct: 160 AREESDRRRQRETRANTLDDEDRMNVMLSLDETYADVFPLRADPMSPQAYVSVTRGCDNM 219

Query: 190 CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC---- 245
           C FCVVP+TRG E SR    V++E RKLID GV EITLLGQNVN++      G       
Sbjct: 220 CAFCVVPFTRGRERSRPFESVLEECRKLIDQGVKEITLLGQNVNSYADASEVGTSAKTDA 279

Query: 246 -----------------------TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHG 282
                                   F+DL+ +++ I    R+R+T+ HP+D  D L++   
Sbjct: 280 DAPFGAYAKGFTSVYKPKRVGARAFADLVEAVAAIDVECRVRFTSPHPKDFPDDLLRVIA 339

Query: 283 DLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGE 342
           +   +   LH+P QSGS   L+ M R +T   Y ++I+R R + P +AISSDFI GF GE
Sbjct: 340 NTPNVCKQLHMPAQSGSTSTLERMRRGYTREAYLELIERAREIIPGVAISSDFISGFCGE 399

Query: 343 TDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQ 402
           ++D+   T+ L++ + Y  A + +           +  +  E VK  RL  + +  R   
Sbjct: 400 SEDEHAETLTLLETVRYEHARTRR----------GLRRRRPEEVKKRRLAEVIETFRRCA 449

Query: 403 VSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPWLQSVVLNSKNHNI------------- 447
              N   VG    VLIE   K+    ++ GRS   + VV+  K                 
Sbjct: 450 ADVNAREVGCTHLVLIEGASKKNPESQMSGRSDTGKRVVVQGKRTKANALDGDSEEVDIK 509

Query: 448 -GDIIKVRITDVKISTLYGELV 468
            GD +  +I +   STL  E V
Sbjct: 510 SGDYVVAKIVEAGASTLVAEPV 531


>gi|167751324|ref|ZP_02423451.1| hypothetical protein EUBSIR_02310 [Eubacterium siraeum DSM 15702]
 gi|167655570|gb|EDR99699.1| hypothetical protein EUBSIR_02310 [Eubacterium siraeum DSM 15702]
          Length = 443

 Score =  336 bits (863), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 127/446 (28%), Positives = 231/446 (51%), Gaps = 22/446 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R+ V+++GC++N Y+S  +       GYE+ + +  AD++++N+C + E + +K    + 
Sbjct: 14  RYTVQTFGCKVNQYESASVAKAMDEHGYEKTDDIFTADIVIINSCSVTENSDKKAKQLIN 73

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           RI++            +VV+ GC  QA  E   + S   ++V G +    + ++++    
Sbjct: 74  RIKS-------SDPMKIVVLTGCFPQAFPETASKLS--ADIVTGTEHKDSIADMIDVFTG 124

Query: 146 GK--RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            K  +V      V+ ++E+    D G  R     AF+ I++GCD+FC++C++P  RG   
Sbjct: 125 NKVKQVAIPPRPVKKQYEKQKNADMGKTR-----AFIKIEDGCDRFCSYCIIPTARGSVR 179

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SRSL  + +E R  +  G  E+ L+G N+ +  G+ +       +D + ++  + G+ R+
Sbjct: 180 SRSLQDITEEVRFQVSCGHKEMVLVGINL-SCYGQEI---GLRLADAIEAVCSVDGVERV 235

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R ++  P  ++D  I        L P+ HL +QSGS   LK MNR +T  EY  I+ R+R
Sbjct: 236 RLSSLEPELLTDEDIARMAAQKKLCPHFHLSLQSGSSATLKRMNRHYTPDEYYDIVLRLR 295

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              PD AI++D +VGF GETD++F+ + +   K+G+A    F YS R GT  +   + + 
Sbjct: 296 KAFPDCAITTDIMVGFAGETDEEFKESCEFAQKVGFAAMHVFTYSIREGTAAARRTDHIA 355

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
            ++  +R   +    ++ +  +  +CVG+  +VLI++  + +    G +P    V +   
Sbjct: 356 HDIAVKRYHAMSSLAKKLKEEYFRSCVGKTEKVLIQRR-ESEEYANGLTPQYVPVRIYGS 414

Query: 444 NHNIGDIIKVRITDVKISTL-YGELV 468
           + N  DII V+IT    S    GE +
Sbjct: 415 DANRQDIITVQITGASGSDFCVGEEI 440


>gi|162148088|ref|YP_001602549.1| hypothetical protein GDI_2305 [Gluconacetobacter diazotrophicus PAl
           5]
 gi|209542702|ref|YP_002274931.1| MiaB-like tRNA modifying enzyme [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|161786665|emb|CAP56248.1| conserved hypothetical protein [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|209530379|gb|ACI50316.1| MiaB-like tRNA modifying enzyme [Gluconacetobacter diazotrophicus
           PAl 5]
          Length = 420

 Score =  336 bits (863), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 126/443 (28%), Positives = 196/443 (44%), Gaps = 36/443 (8%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           + ++GC++N Y+S  M     +            D+I++NTC +  +A  +    + R  
Sbjct: 7   ILTFGCRLNTYESEVMRGHAAALD----------DVIIVNTCAVTAEAERQARQAIRRAH 56

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
                  ++     +VV GC AQ + +      P V  V+G +           A     
Sbjct: 57  -------RDRPGARIVVTGCAAQIDPDR-WSALPGVTRVLGNREKLEAASWTPAAMQDGH 108

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
            V    +  +    L     G  R     AF+ +Q+GCD  CTFC++P+ RG   S  + 
Sbjct: 109 AVSDIMAATETVPHLVTEFAGRTR-----AFVEVQQGCDHRCTFCIIPFGRGPSRSVPVG 163

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
            VV++ R L+ +G  EI L G ++ +W G  L G           L+ +  L RLR ++ 
Sbjct: 164 AVVEQVRALVASGYREIVLTGVDITSW-GGDLPGRPALGQLCRRVLALVPELERLRLSSV 222

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
            P ++ D L +        MPYLHL +Q+GSD +LK M RRH   +  +++DR R+ RPD
Sbjct: 223 DPVEIDDDLWRLLAQEGRFMPYLHLSLQAGSDMVLKRMKRRHLVEDVARVLDRARACRPD 282

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           + I +D I GFP ETD  F  T+D V          F YS R GTP + M   V   V+ 
Sbjct: 283 LGIGADVIAGFPTETDALFAETLDFVRAQRLPYLHVFPYSERPGTPAARMP-AVPVAVRK 341

Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSV-----VLNSK 443
           ER   L+   +     ++ + +G+ + VL+E          G S     V      L+  
Sbjct: 342 ERAAQLRAAGQAAARDYHASLLGRTLNVLLETA------TTGHSEEFAPVRLAPDRLDGT 395

Query: 444 NHNIGDIIKVRITDVKISTLYGE 466
               G I+ VR T +  + L  E
Sbjct: 396 AAEAGRIVTVRATAIDENGLVAE 418


>gi|124006098|ref|ZP_01690934.1| conserved hypothetical protein [Microscilla marina ATCC 23134]
 gi|123988275|gb|EAY27928.1| conserved hypothetical protein [Microscilla marina ATCC 23134]
          Length = 438

 Score =  336 bits (863), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 119/439 (27%), Positives = 210/439 (47%), Gaps = 14/439 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++    + GC++N  ++  +   F S+GY++V+  D  D+ ++NTC +   A +K    +
Sbjct: 2   KKVAFYTLGCKLNFSETSTITRQFESRGYKKVDFNDSPDIFIINTCSVTANADKKCRKVV 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
              +       K   D  V + GC AQ + +EI    P V+ V+G    +RL +LL    
Sbjct: 62  KEAK-------KISPDGYVAIIGCYAQLKPKEI-SNIPGVDAVLGASEKFRLLDLLGTFV 113

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
              +       V +           ++       FL +Q+GC+  C+FC +P  RG   S
Sbjct: 114 KPAQPEVLVQEVTNA----DTFAHSHSMGDRTRTFLKVQDGCNYNCSFCTIPLARGKSRS 169

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
            S+  ++  A K+    V E+ L G N+  + G      K  F DL+ +L E+ GL R+R
Sbjct: 170 DSIENIIASAHKIGQTEVKEVVLTGVNIGDF-GIQEGRRKERFIDLVKALDEVDGLERIR 228

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
            ++  P  +S+ +I         +P+ H+P+QSGS++ILK+M RR+    Y   +++I+ 
Sbjct: 229 ISSIEPNLLSNDVIAFTAQSKRFVPHFHIPLQSGSNKILKAMRRRYERGLYVDRVNKIKE 288

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           + P   I  D IVGFPGET++DF  T + ++++  +    F YS R  T    +   V +
Sbjct: 289 LMPHCCIGVDVIVGFPGETEEDFLDTYNFLNELDISYLHVFTYSERANTHALEIKSVVPK 348

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
             +A+R   L     +++  F +  +G+   VL EK    +G++ G +     V      
Sbjct: 349 EERAKRSKMLHILSDKKRRYFYEQQLGKEYTVLFEK-DINEGQMEGFTENYVRVTAKYDP 407

Query: 445 HNIGDIIKVRITDVKISTL 463
             I ++ KVR++ +    L
Sbjct: 408 LLINELKKVRLSHINDQML 426


>gi|326316483|ref|YP_004234155.1| MiaB-like tRNA modifying enzyme YliG [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323373319|gb|ADX45588.1| MiaB-like tRNA modifying enzyme YliG [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 463

 Score =  336 bits (863), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 119/485 (24%), Positives = 201/485 (41%), Gaps = 52/485 (10%)

Query: 14  VSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIR 73
           +S ++     P+  FV S GC   + DS  +     ++GY+   + + ADL+++NTC   
Sbjct: 1   MSDVLSPTKTPKVGFV-SLGCPKALTDSELILTQLSAEGYQTSKTFEGADLVIVNTCGFI 59

Query: 74  EKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEE----ILRRSPIVNVVVG 129
           + A ++    +G                 V+V GC+    GE     +    P V  V G
Sbjct: 60  DDAVKESLDTIGEALAENGK---------VIVTGCLGARAGEGGGNLVREMHPSVLAVTG 110

Query: 130 PQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGY---NRKRGVTAFLTIQEGC 186
           P     + + + +               D F  L   + G           A+L I EGC
Sbjct: 111 PHATQEVMDAVHQNLP---------KPHDPFIDLVPGNFGVAGIKLTPKHYAYLKISEGC 161

Query: 187 DKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGL 240
           +  CTFC++P  RG  +SR +  V+ EA+ L + GV E+ ++ Q+ +A+      R    
Sbjct: 162 NHRCTFCIIPSMRGDLVSRPVGDVLSEAKALFEGGVKELLVISQDTSAYGVDVKYRTGFW 221

Query: 241 DGE--KCTFSDLLYSLSEI----KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP 294
           DG+  K    +L+ +L EI       VRL Y   +P         A G    ++PYL +P
Sbjct: 222 DGKPVKTRMLELVQTLGEIAEPYGAWVRLHYVYPYPSVDEVIPFMATG---KILPYLDVP 278

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
            Q     +L+ M R  +     + I R R   P++ + S FI GFPGET+++F+  +D +
Sbjct: 279 FQHSHPDVLRRMKRPASGERNLERIQRWREACPELVVRSTFIAGFPGETEEEFQHLLDFL 338

Query: 355 DKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQII 414
            +    +A  F YS   G   + +   +   V+ ER         E  +      VG  +
Sbjct: 339 REAQIDRAGCFAYSDVNGAVANELPGMLPMEVREERRARFMAVAEEVSIERLRRRVGATM 398

Query: 415 EVLIE-----KHGKEKGKLVGRSPWLQSVVL------NSKNHNIGDIIKVRITDVKISTL 463
           +VL++           G+    +P +  VV        SK   +G+  + +I  V+   L
Sbjct: 399 QVLVDHAPALGRKGGTGRSYADAPEIDGVVHLLPPEKISKQLKVGEFTRAQIVGVQGHDL 458

Query: 464 YGELV 468
               +
Sbjct: 459 VARPI 463


>gi|224026389|ref|ZP_03644755.1| hypothetical protein BACCOPRO_03145 [Bacteroides coprophilus DSM
           18228]
 gi|224019625|gb|EEF77623.1| hypothetical protein BACCOPRO_03145 [Bacteroides coprophilus DSM
           18228]
          Length = 438

 Score =  336 bits (863), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 121/446 (27%), Positives = 201/446 (45%), Gaps = 19/446 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++    + GC++N  ++  +  M    G   V   + AD+ V+NTC + E A +K    +
Sbjct: 10  KKAVYYTLGCKLNFSETSSIGKMLKDVGVRTVRKGEKADICVINTCSVTEIADKKCRQAI 69

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R+        K+     VVV GC AQ + E++      V++V+G +    L   L    
Sbjct: 70  HRL-------TKQHPGAFVVVTGCYAQLKPEQV-SNIEGVDLVLGAEQKGELINYLGSLE 121

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
             +       + +D            +R      FL +Q+GCD FC++C +P+ RG   +
Sbjct: 122 KHEHGEAITTATKDIRSFAP----SCSRGDRTRYFLKVQDGCDYFCSYCTIPFARGRSRN 177

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
             +  +V +AR+    G  EI L G N+    G        TF DL+ +L +++G+ R R
Sbjct: 178 GKIEDLVAQARQAAAEGGKEIVLTGVNI----GDFGKTTGETFFDLVKALDQVEGIERFR 233

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
            ++  P  ++D +I+        MP+ H+P+QSG D +LK M RR+    +   I +I+ 
Sbjct: 234 ISSIEPNLLTDEIIEYVAHSRAFMPHFHIPLQSGCDEVLKLMRRRYDIALFASKIRKIKE 293

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           + PD  I  D IVG  GET + F    + +  +   Q   F YS R GT    +   V  
Sbjct: 294 LMPDAFIGVDVIVGTRGETPEYFEKAYEFIRGLDVTQLHVFSYSERPGTQALKIDYVVPA 353

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
             K +R   L     E+  +F    +GQ  +VL+EK  K    + G +     V L   +
Sbjct: 354 EEKHQRSQRLLALSDEKTKAFYARHIGQEAKVLMEK-SKAGMPMHGFTENYIRVELEHDD 412

Query: 445 HNIGDIIKVRITDVKIST--LYGELV 468
                +++VR+ +    +  L GELV
Sbjct: 413 SLDNHLVQVRMGEFNEDSTALKGELV 438


>gi|255016549|ref|ZP_05288675.1| putative Fe-S oxidoreductase [Bacteroides sp. 2_1_7]
          Length = 444

 Score =  336 bits (863), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 124/438 (28%), Positives = 206/438 (47%), Gaps = 17/438 (3%)

Query: 17  IVDQCIVP-QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREK 75
           ++DQ +   ++    + GC++N  ++  +  +   QG  +V   + AD+ V+NTC + E 
Sbjct: 1   MIDQTVFNNKKAAYYTLGCKLNFAETSTIGKLLAEQGVRKVRPGEKADICVVNTCSVTEL 60

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135
           A +K    + RI        K+     +VV GC AQ + EE+      V++V+G +    
Sbjct: 61  ADKKCRQAIRRI-------GKQHPGAFIVVTGCYAQLKPEEV-SHIEGVDLVLGAEQKLE 112

Query: 136 LPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
           + + LE     +       S        S      +R R    FL +Q+GCD +C++C +
Sbjct: 113 ILQYLENLEKKENGGAVIASQSKDIRSFSPSCSADDRTR---HFLKVQDGCDYYCSYCTI 169

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
           P+ RG   + +++ +V++A+++   G  EI L G N+    G        TF DL+ +L 
Sbjct: 170 PFARGRSRNGTIASMVEQAQEVARKGGKEIVLTGVNI----GDFGKSTDETFIDLIRALD 225

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
           E+ G+VR R ++  P  ++D  I          P+ H+P+QSGSD +L+ M RR+    +
Sbjct: 226 EVDGIVRYRISSIEPNLITDEAIDFVAHSKRFAPHFHIPLQSGSDAVLQLMRRRYDTALF 285

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
           R  I++I+ V P   I  D IVG  GETD+ F      +  +  +Q   F YS R GT  
Sbjct: 286 RHKIEKIKEVMPHAFIGVDVIVGTRGETDEYFEEARQFIGSLDISQLHVFSYSERPGTQA 345

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWL 435
             +   VD   K  R   L      +  +F +A +GQ   VL E H K+ GK+ G +   
Sbjct: 346 LKIDHVVDPKTKHARSQQLLDISDRKLHAFYEAHIGQEANVLFE-HTKKDGKMHGFTENY 404

Query: 436 QSVVLNSKNHNIGDIIKV 453
             V +      + +  KV
Sbjct: 405 IKVEIPYDATLVNETRKV 422


>gi|171463614|ref|YP_001797727.1| MiaB-like tRNA modifying enzyme YliG [Polynucleobacter necessarius
           subsp. necessarius STIR1]
 gi|238066438|sp|B1XUT6|RIMO_POLNS RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|171193152|gb|ACB44113.1| MiaB-like tRNA modifying enzyme YliG [Polynucleobacter necessarius
           subsp. necessarius STIR1]
          Length = 452

 Score =  336 bits (863), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 119/467 (25%), Positives = 205/467 (43%), Gaps = 45/467 (9%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC   + DS  +     ++GY+       ADL+V+NTC   + A E+  S +G
Sbjct: 4   KIGFVSLGCPKALVDSELILTQLSAEGYKTAKDYSGADLVVVNTCGFIDSAVEESLSAIG 63

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEE----ILRRSPIVNVVVGPQTYYRLPELLE 141
                            V+V GC+   +  +    I    P V  V GP     + +++ 
Sbjct: 64  EALAENGK---------VIVTGCLGARKNADGSDLIHSIHPKVLAVTGPHATDEVMQVIH 114

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
                   + TD           +            A+L I EGC+  CTFC++P  RG 
Sbjct: 115 LHLPKPHDLYTDL----------VPSARVRLTPKHYAYLKISEGCNHRCTFCIIPNLRGD 164

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYS 253
            +SR +  V+ E ++L ++GV E+ ++ Q+ +A+      R    DG+  K    DL+ +
Sbjct: 165 LVSRPIGDVLLEVKRLFESGVKELLVVSQDTSAYGVDIQYRTGFWDGKPVKTKMFDLVNT 224

Query: 254 LSEI----KGLVRLRYTTSHPRDMSDCLIKA-HGDLD-VLMPYLHLPVQSGSDRILKSMN 307
           L++I    +  VRL Y   +P       + A   +    ++PYL +P+Q     +LK M 
Sbjct: 225 LNQIAREHQAWVRLHYVYPYPHVDDILPLMAEFAEHGYGVLPYLDIPLQHAHPDVLKKMK 284

Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           R  +  +  + I   R   PD+ I S FI GFPGET+ +F   ++ +D+    +A  F Y
Sbjct: 285 RPASGEKNLERILAWREACPDLVIRSTFIAGFPGETEGEFEYLLNFLDEAQIDRAGCFAY 344

Query: 368 SPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-- 425
           SP  G   + +   V + ++ +R   L  K  E  V      +G+ ++V+I++       
Sbjct: 345 SPVDGATANELANPVPDQIREDRRARLMAKAEEISVGRLAKKIGKRLQVIIDRVDDHGGI 404

Query: 426 GKLVGRSPWLQSVV------LNSKNHNIGDIIKVRITDVKISTLYGE 466
           G+ +G +P +  +V        SK +  G+II+V +   +   L  E
Sbjct: 405 GRTIGDAPEIDGLVRVLPANKPSKRYRAGEIIRVTVISSQGHDLIAE 451


>gi|319408559|emb|CBI82212.1| putative enzyme [Bartonella schoenbuchensis R1]
          Length = 437

 Score =  336 bits (863), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 130/460 (28%), Positives = 210/460 (45%), Gaps = 36/460 (7%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           +   R    S GC   + DS R+     S+GYE  +    ADL+++NTC   + A  +  
Sbjct: 1   MAAPRISFVSLGCPKALVDSERIITSLRSEGYEISHKHQGADLVIVNTCGFLDSARTESL 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           + + +        IKE G   V+V GC+  AE E I +  P V  + GPQ Y  + + + 
Sbjct: 61  ANIEKA-------IKENG--KVIVTGCLG-AEPEVIRQAHPSVLAITGPQAYENVIQAVH 110

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
                         V D F  L    G     R   A+L I EGC   C+FC++P  RG 
Sbjct: 111 TV---------VPPVHDPFVDLVPPQGIRLTPRHY-AYLKISEGCSNRCSFCIIPALRGN 160

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE--------KCTFSDLLYS 253
            +SR +  ++ EA KL+  GV E+ ++ Q+ +A+       E        K  F DL   
Sbjct: 161 LVSRPIGDILREAEKLVQAGVKELLIISQDTSAYGIDIKYAESSWKDRTIKTKFLDLCRE 220

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
           L ++   VR+ Y   +P   +   + A G    ++PYL +P Q  S  +L++M R     
Sbjct: 221 LGDMGVWVRMHYVYPYPHVDAVIELMAAG---KILPYLDIPFQHASPTVLRNMKRPAHME 277

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
           +  + I+  R + PD+ + S FIVGFPGET++DF   ++ +++    +A  FKY    G 
Sbjct: 278 KTNRRIEEWRKICPDLTLRSTFIVGFPGETNEDFEMLLEWLEETKIERAGCFKYEAVKGA 337

Query: 374 PGSNML-EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE--KGKLVG 430
             +++    V E VK  R      K ++         +GQ +++LI++   +  KG+   
Sbjct: 338 AANDLELGNVAEEVKESRWHRFMAKQQQISARLLKKKIGQRLQILIDESQGKVAKGRSKY 397

Query: 431 RSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468
            +P +  VV  S    +  G+ + V+I       LYG  V
Sbjct: 398 DAPEIDGVVHISSRRPLRSGEFVTVKIEQSDAYDLYGIAV 437


>gi|13473651|ref|NP_105219.1| hypothetical protein mlr4319 [Mesorhizobium loti MAFF303099]
 gi|14024401|dbj|BAB51005.1| mlr4319 [Mesorhizobium loti MAFF303099]
          Length = 446

 Score =  336 bits (863), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 128/452 (28%), Positives = 205/452 (45%), Gaps = 32/452 (7%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
            P R  V ++GC++N Y+S  M     S G   +        ++ NTC +  +A  +   
Sbjct: 18  APNRIDVVTFGCRLNTYESEVMRREAESAGLGALQGG----AVIFNTCAVTGEAVRQARQ 73

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            + + R       ++     ++V GC AQ E E+       V++V+G +   +       
Sbjct: 74  AIRKAR-------RDNPGARIIVTGCAAQTEPEKFAA-MDEVDLVLGNEEKLKANSYRAL 125

Query: 143 ARFG-----KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197
             FG     K  V+  +SV +    +  VD    R R   AF+ +Q GCD  CTFC++PY
Sbjct: 126 PDFGVNDTEKARVNDIFSVRETAGHM--VDAIEGRAR---AFVQVQNGCDHRCTFCIIPY 180

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257
            RG   S  +  VV++ ++L  NG  EI L G ++ ++ G  L G       +   L ++
Sbjct: 181 GRGNSRSVPMGAVVEQVKRLAGNGYAEIVLTGVDMTSF-GADLPGAPKLGRLVKTILKQV 239

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
             + RLR ++    +  D L+ A      LMP+LHL +QSG D ILK M RRH   +  +
Sbjct: 240 PDVKRLRLSSIDSIEADDDLLDAIATEPRLMPHLHLSLQSGDDMILKRMKRRHLRDQSIR 299

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
             + +R +RP+I   +D I GFP ETD  F  ++ +V++ G      F +SPR GTP + 
Sbjct: 300 FCEDVRKLRPEIVFGADIIAGFPTETDAMFENSIKIVEECGLTHLHVFPFSPREGTPAAR 359

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQS 437
           M  QV   V  +R   L+            +  G    +LIE+ G      +GR+     
Sbjct: 360 MP-QVRREVVKQRAARLRAAGEAAYRRHLSSLPGTRQSILIERDG------LGRTEGFTL 412

Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
             L +     G+I++  IT    + L    + 
Sbjct: 413 AALGTGA--PGEIVEATITGHDGARLNAVPLA 442


>gi|310814756|ref|YP_003962720.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Ketogulonicigenium
           vulgare Y25]
 gi|308753491|gb|ADO41420.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Ketogulonicigenium
           vulgare Y25]
          Length = 459

 Score =  336 bits (863), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 121/455 (26%), Positives = 201/455 (44%), Gaps = 38/455 (8%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
              + S GC   + DS R+     ++GY        AD +++NTC   + A  +    +G
Sbjct: 31  TIGMVSLGCPKALVDSERILTRLRAEGYAISPDYAGADAVIVNTCGFLDSAKAESLEAIG 90

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                            V+V GC+  AE E I    P V  V GP  Y ++ + +  A  
Sbjct: 91  EALQENGK---------VIVTGCLG-AEPEYITGVHPKVMAVTGPHQYEQVLDAVHVA-- 138

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                       D F  L    G     R   ++L I EGC+  C FC++P  RG  +SR
Sbjct: 139 -------VPPSPDPFVDLLPAAGIKLTPRHY-SYLKISEGCNHKCKFCIIPDMRGRLVSR 190

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-----GEKCTFSDLLYSLSEIKGL 260
               +V EA KL+ +GV E+ ++ Q+ +A  G  L      G +   +DL   L  +   
Sbjct: 191 PAFAIVREAEKLVQSGVKELLVISQDTSA-YGVDLKYATERGHRAHITDLARDLGSLGAW 249

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
           VR+ Y   +P       + A G   +++PYL +P Q     +L+ M R   A +    I 
Sbjct: 250 VRMHYVYPYPHVRDMIPLMADG---LILPYLDIPFQHAHPDVLRRMARPAAAAKTLDEIA 306

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
             R + PDI + S FIVG+PGET+ +F+  +D +D+    +   F+Y    G   + + +
Sbjct: 307 AWRDICPDITLRSTFIVGYPGETEAEFQTLLDWLDEAQLDRVGCFQYENVAGARSNLLPD 366

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQ 436
            V + VK +R     +K +    +   A VGQ ++V+I++   E G    R+    P + 
Sbjct: 367 HVPDEVKQDRWNRFMEKAQAISAAKLQAKVGQQMDVIIDEI--EDGVATCRTKADAPEID 424

Query: 437 SVVLNS---KNHNIGDIIKVRITDVKISTLYGELV 468
             +      +  ++GDI++V + + +   L+G  V
Sbjct: 425 GNLFIDEGVERLSVGDIVRVTVDEAEDYDLWGTPV 459


>gi|330837149|ref|YP_004411790.1| Ribosomal protein S12 methylthiotransferase rimO [Spirochaeta
           coccoides DSM 17374]
 gi|329749052|gb|AEC02408.1| Ribosomal protein S12 methylthiotransferase rimO [Spirochaeta
           coccoides DSM 17374]
          Length = 458

 Score =  336 bits (862), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 116/455 (25%), Positives = 201/455 (44%), Gaps = 22/455 (4%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
            ++ ++++ GC  N  D+  M     S G+ RV+   +A+L+V+NTC   E A ++    
Sbjct: 11  KKKVYIENLGCAKNQVDAETMLGYLESDGWSRVDDAANAELVVVNTCSFIEAARKESIDA 70

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
              ++           D  VV+ GC+AQ   + +    P  + + G +   ++   +   
Sbjct: 71  FFSLKA-------RCPDAKVVMTGCLAQRYADSLAADLPEADGIFGNRDLTQVLPFVRSV 123

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             G R V      +   +    V+         ++++ I EGC+  C FC +P  RG  +
Sbjct: 124 LDGARPVRI---PDHASQGHEFVERMDRLGYPGSSYVKISEGCNHTCAFCAIPGIRGPLV 180

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SRS+  V+ E R LI +GV EI L+ Q++ ++     +G K  F DL+ S++ + G   +
Sbjct: 181 SRSMEDVLAETRSLISDGVREINLIAQDLASFGVD--NGGKSRFCDLVESIAAVPGNFFV 238

Query: 264 RYTTSHPRDMSDCLIKAHGDLD-VLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           R    +P      L       +  ++PY  LP Q  +  +L++M R  T   Y  +ID I
Sbjct: 239 RLLYIYPDAYPRRLTDIIAASEGKILPYFDLPFQHAAVPVLRAMGRAGTPESYLALIDSI 298

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           RS  P     S F++GFPGE   +F   +D +         SF YS   GT   +M  + 
Sbjct: 299 RSRIPQAVFRSTFMLGFPGENRAEFDVLLDFLKDARLDWVGSFIYSREEGTSAWDMRGET 358

Query: 383 D--ENVKAERL--LCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPW 434
              + VK   L    L     E   +  +  VG + +VL+E+  + +   +GR    +P 
Sbjct: 359 AHRKAVKQAALWQQELIALQEEITFTRLERFVGTVHDVLLEEKVEGEDLYIGRMYAQAPD 418

Query: 435 LQSV-VLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           +  + V+  ++   G ++K  IT      L    V
Sbjct: 419 VDGLTVVMGRDMVPGTMVKCGITRRNGLDLEAVPV 453


>gi|307943540|ref|ZP_07658884.1| MiaB-like tRNA modifying enzyme [Roseibium sp. TrichSKD4]
 gi|307773170|gb|EFO32387.1| MiaB-like tRNA modifying enzyme [Roseibium sp. TrichSKD4]
          Length = 459

 Score =  336 bits (862), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 133/448 (29%), Positives = 216/448 (48%), Gaps = 36/448 (8%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
              V ++GC++N Y+S  M+    + G +        D I++NTC +  +A  +    + 
Sbjct: 2   TIDVVTFGCRLNAYESEVMKREADAAGLK--------DAILINTCAVTGEAVRQARQAVR 53

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           + +       ++  +  V+V GC AQ E          V++V+G           E A F
Sbjct: 54  KAK-------RDNPNAKVIVTGCAAQTETAT-FSEMEEVDLVLGNTEKLERKAYEEVAAF 105

Query: 146 G-----KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           G     K  V+   SV +    L  +DG   R R   AF+ +Q GCD  CTFC++PY RG
Sbjct: 106 GVSETEKVRVNDIMSVTETAGHL--IDGLEGRAR---AFVQVQNGCDHRCTFCIIPYGRG 160

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
              S  +  VVD+ ++L+ NG  EI + G ++ +  G  L G     + +   L+ +  L
Sbjct: 161 NSRSVPMGVVVDQIKRLVGNGYNEIVITGVDITS-YGADLPGSPKLGTLIAKILTLVPDL 219

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            RLR ++    +  + L+    +   LMP+ HL +Q+G D ILK M RRH   +  +  +
Sbjct: 220 KRLRLSSIDSIEADEELMHVIANDHRLMPHFHLSLQAGDDMILKRMKRRHLRADTIRFCE 279

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
            +R++RPD+   +D I GFP ET+  F  ++ +VD+ G      F +SPR GTP + M  
Sbjct: 280 DVRAMRPDVVFGADIIAGFPTETEAMFENSLKIVDECGLTHLHVFPFSPRPGTPAARMP- 338

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440
           Q++  +  ER   L+ K  E  +    A VG + +VLIEK G      +GR+     V +
Sbjct: 339 QLERKIVKERGARLRAKGEEALLKHLQAEVGGVRKVLIEKEG------LGRTEQFTQVEV 392

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
           +      GDI++ RI       L G+++
Sbjct: 393 DGGAA--GDIVETRIKGQTGRHLLGDIL 418


>gi|46446860|ref|YP_008225.1| hypothetical protein pc1226 [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|81626909|sp|Q6MBU9|RIMO_PARUW RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|46400501|emb|CAF23950.1| conserved hypothetical protein [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 475

 Score =  336 bits (862), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 118/452 (26%), Positives = 211/452 (46%), Gaps = 22/452 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC  N+ DS  M  +    GYE   ++++AD +V+NTC   E + ++    + 
Sbjct: 37  KINFISLGCPRNLVDSEVMLGILLKAGYEVAPTLEEADYLVINTCGFLEASRQESMDTVE 96

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            + + +    K      ++V GC+ Q   + +    P ++ ++G      + + ++  + 
Sbjct: 97  EVLSQRKKTAK------LIVTGCMVQTHSDALKTTFPSIDYLLGSGDVEGILKAVQSTQK 150

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G+       S     E   +            A+L I EGC K C +CV+P  +G   S+
Sbjct: 151 GQ----IISSARSYLEAGEVPR--RLSTPKHYAYLKIAEGCRKRCAYCVIPTIKGPLKSK 204

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT-FSDLLYSLSEIKGLVRLR 264
              Q++ E   L+  GV E+ L+ Q++    GK    +K T   +LL S+ EIK    LR
Sbjct: 205 GKEQILKEFNLLLSQGVKEVILIAQDLG-DYGKDQGAKKLTALLNLLQSMLEIKQAFWLR 263

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
               +P +++D LI        + PYL +P+Q  +++ILKSM R  +  +  +II ++R 
Sbjct: 264 LLYLYPDEITDELIALMKSDSRICPYLDMPIQHVNNQILKSMRRATSKEDIIEIITKLRR 323

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             P++AI +  IVGFPGET++ F+  +  V          FK+S   G+   ++  Q+ +
Sbjct: 324 EIPNVAIRTSLIVGFPGETEEQFQELIQFVQDYPLENVGIFKFSREPGSHAYDLPNQISD 383

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-----GKLVGRSPWLQSVV 439
            +K +R   L +  ++         +G+ I V++E +  E      G+  G+ P +   V
Sbjct: 384 EMKEDRYHRLMQVQKKVVKKNLKKMIGKKIAVVVEGYHPETELLMIGRHTGQCPDIDGQV 443

Query: 440 LNSKNHNI---GDIIKVRITDVKISTLYGELV 468
           L +    +   G+I  V ITDV    L G ++
Sbjct: 444 LINDGRKVKAFGEIYTVEITDVADYDLVGHVI 475


>gi|254712376|ref|ZP_05174187.1| MiaB-like tRNA modifying enzyme YliG [Brucella ceti M644/93/1]
 gi|254715448|ref|ZP_05177259.1| MiaB-like tRNA modifying enzyme YliG [Brucella ceti M13/05/1]
 gi|261217182|ref|ZP_05931463.1| conserved hypothetical protein [Brucella ceti M13/05/1]
 gi|261320053|ref|ZP_05959250.1| conserved hypothetical protein [Brucella ceti M644/93/1]
 gi|260922271|gb|EEX88839.1| conserved hypothetical protein [Brucella ceti M13/05/1]
 gi|261292743|gb|EEX96239.1| conserved hypothetical protein [Brucella ceti M644/93/1]
          Length = 437

 Score =  336 bits (862), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 134/459 (29%), Positives = 209/459 (45%), Gaps = 42/459 (9%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R    S G    + DS R+     S+GYE     D ADL+++NTC   + A ++    +G
Sbjct: 5   RVSFVSLGSPKALVDSERIITGLRSEGYEISRKHDGADLVIVNTCGFLDSARDESLEAIG 64

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                            V+V GC+  AE + I  R P V  + GPQ Y  +   +     
Sbjct: 65  LA---------LNEYGKVIVTGCLG-AEPDVIRERHPNVLAITGPQAYESVMNAVHEVAP 114

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                       D F  L +   G        A+L I EGC   C+FC++P  RG  +SR
Sbjct: 115 ---------PAHDPFVDL-VPPQGVKLTPRHYAYLKISEGCSNRCSFCIIPALRGDLVSR 164

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE---------KCTFSDLLYSLSE 256
            +++V+ EA KL+  GV EI ++ Q+ +A  G  +  +         +  F D    L E
Sbjct: 165 PINEVLREAEKLVQAGVKEILVISQDTSA-YGLDIKYQEAMWQDRTVRTKFLDFSRELGE 223

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           +   VR+ Y   +P       + A G    ++PYL +P Q  S  +LK+M R     +  
Sbjct: 224 MGVWVRMHYVYPYPHVDEVIPLMAEG---KILPYLDIPFQHASPAVLKNMRRPAHQEKTS 280

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
           + I   R   PD+A+ S FIVG+PGET++DF+  +D +D+    +A  FKY    G   +
Sbjct: 281 RRIQAWRETCPDLAVRSTFIVGYPGETEEDFQMLLDWLDEAKIERAGCFKYEAVKGAKAN 340

Query: 377 NM-LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS--- 432
           ++ LEQV E VK  R      K ++   +     VG+ + V+I++     GK  GR+   
Sbjct: 341 DLGLEQVPEEVKEARWHRFMAKQQQISTNLLKKKVGKRLPVIIDEANGTIGK--GRTRYD 398

Query: 433 -PWLQS-VVLNS-KNHNIGDIIKVRITDVKISTLYGELV 468
            P +   V ++S +   +GDI+ V+I       L+G  V
Sbjct: 399 APEIDGSVHISSRRPLRVGDIVTVKIEASDAYDLHGTAV 437


>gi|15892503|ref|NP_360217.1| hypothetical protein RC0580 [Rickettsia conorii str. Malish 7]
 gi|15619661|gb|AAL03118.1| unknown [Rickettsia conorii str. Malish 7]
          Length = 421

 Score =  336 bits (862), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 117/436 (26%), Positives = 207/436 (47%), Gaps = 32/436 (7%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V ++GC++N+Y+S  +       G +        ++ + NTC + + A ++    + R +
Sbjct: 14  VVTFGCRLNIYESEIIRKNLELSGID--------NVAIFNTCAVTKAAEKQARQAIRRAK 65

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
                  K   DL ++V GC AQ    ++    P V+ V+G +          +    K 
Sbjct: 66  -------KNNPDLKIIVTGCSAQTSP-QMYGNMPEVDKVIGNEEKLLPNYY--QITDAKI 115

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
            V+   SV++    L       +R     AF+ +Q GCD FCTFC++PY RG   S ++ 
Sbjct: 116 TVNDIMSVKETASHLVSSFDCKSR-----AFIQVQNGCDHFCTFCIIPYGRGKSRSVAIG 170

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
            + ++ + L+ NG  E+   G +V A  G  L G       +   L+ +  L RLR ++ 
Sbjct: 171 AIAEQVKHLVLNGFKEVVFTGVDVTA-YGSDLPGSPTFAQMIKRVLNLVPELKRLRLSSI 229

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
              ++ D L +     + +MP+ H+ +Q+G D ILK M RRH      +   ++R++RP+
Sbjct: 230 DVAEIDDELFELIAYSERIMPHFHISLQAGDDMILKRMKRRHNRANVIEFCRKLRAIRPE 289

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           ++  +D I GFP ET + F  T  L+ +        F YS R GTP + M  QV +N++ 
Sbjct: 290 VSFGADIIAGFPTETPEMFENTRKLISEAELQYLHVFPYSEREGTPAARMP-QVPKNIRK 348

Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIG 448
           ER   L+++ + Q   F    +GQ +E+L+E +       +  +     V L+ K   IG
Sbjct: 349 ERAAILRQEGQNQLTEFFKKHIGQKVELLVENNN------IAHTENFIPVKLD-KPLEIG 401

Query: 449 DIIKVRITDVKISTLY 464
            I K ++  ++ + + 
Sbjct: 402 QIFKAKLVAIEENYMK 417


>gi|153808740|ref|ZP_01961408.1| hypothetical protein BACCAC_03039 [Bacteroides caccae ATCC 43185]
 gi|149128566|gb|EDM19784.1| hypothetical protein BACCAC_03039 [Bacteroides caccae ATCC 43185]
          Length = 439

 Score =  336 bits (862), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 120/456 (26%), Positives = 209/456 (45%), Gaps = 20/456 (4%)

Query: 17  IVDQCIVPQRFFVK-SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREK 75
           ++D  +   +  V  + GC++N  ++  +  +    G       + AD+ V+NTC + E 
Sbjct: 1   MIDTTVFQNKTAVYYTLGCKLNFSETSTIGKILREAGVRTARKGEKADICVVNTCSVTEM 60

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135
           A +K    + R+       +K+     VVV GC AQ +  ++  +   V+VV+G +    
Sbjct: 61  ADKKCRQAIHRL-------VKQHPGAFVVVTGCYAQLKPGDVA-QIKGVDVVLGAEQKSD 112

Query: 136 LPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
           L   L   +  +       + +D            +R      FL +Q+GCD FC++C +
Sbjct: 113 LLRYLGNLQKHEEGEAFTTATKDIRSFSP----SCSRGDRTRFFLKVQDGCDYFCSYCTI 168

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
           P+ RG   + +++ +V++A +    G  EI L G N+    G        TF DL+ +L 
Sbjct: 169 PFARGRSRNGTIASMVEQAGQAAAEGGKEIVLTGVNI----GDFGKTTGETFFDLVKALD 224

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
           +++G+ R R ++  P  ++D +I+        MP+ H+P+QSGSD +LK M RR+    +
Sbjct: 225 QVEGIERYRISSIEPNLLTDEIIEFVSRSRSFMPHFHIPLQSGSDEVLKLMRRRYDTALF 284

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
              + +I+ V PD  I  D IVG  GET++ F      +  +   Q   F YS R GT  
Sbjct: 285 ASKVKKIKEVMPDAFIGVDVIVGTRGETEEYFEEAYQFIAGLDVTQLHVFSYSERPGTQA 344

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWL 435
             +   V    K +R   L     E+  +F    +GQ + VL+EK  K    + G +   
Sbjct: 345 LKIDYVVSPEEKHQRSQRLLALSDEKTQAFYARHIGQTMSVLMEK-SKAGTPMHGFTENY 403

Query: 436 QSVVLNSKNHNIGDIIKVRITDV--KISTLYGELVV 469
             V + + N     +I VR+ D     + L G +++
Sbjct: 404 IRVEVEADNSLDNQVINVRLGDFNEDKTALKGTILI 439


>gi|237714843|ref|ZP_04545324.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262406886|ref|ZP_06083435.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacteroides sp. 2_1_22]
 gi|294647146|ref|ZP_06724745.1| MiaB-like protein [Bacteroides ovatus SD CC 2a]
 gi|229445168|gb|EEO50959.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262355589|gb|EEZ04680.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacteroides sp. 2_1_22]
 gi|292637433|gb|EFF55852.1| MiaB-like protein [Bacteroides ovatus SD CC 2a]
          Length = 439

 Score =  336 bits (862), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 118/456 (25%), Positives = 212/456 (46%), Gaps = 20/456 (4%)

Query: 17  IVDQCIVPQRFFVK-SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREK 75
           ++D  +   +  V  + GC++N  ++  +  +    G       + AD+ V+NTC + E 
Sbjct: 1   MIDTTVFQNKTAVYYTLGCKLNFSETSTIGKILREAGVRTARKGEKADICVVNTCSVTEM 60

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135
           A +K    + R+       +K+  D  VVV GC AQ +  ++  +   V+VV+G +    
Sbjct: 61  ADKKCRQAIHRL-------VKQHPDAFVVVTGCYAQLKPGDVA-KIDGVDVVLGAEQKGE 112

Query: 136 LPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
           L + L   +  ++      + +D            +R      FL +Q+GCD FC++C +
Sbjct: 113 LLQYLGDLQKHEKGEAITTTTKDIRSFSP----SCSRGDRTRFFLKVQDGCDYFCSYCTI 168

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
           P+ RG   + +++ +V++AR+    G  EI L G N+    G        +F DL+ +L 
Sbjct: 169 PFARGRSRNGTIASMVEQARQAAAEGGKEIVLTGVNI----GDFGKTTGESFFDLVKALD 224

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
           +++G+ R R ++  P  ++D +I+        MP+ H+P+QSG D +L+ M RR+    +
Sbjct: 225 QVEGIERYRISSIEPNLLTDEIIEFVSHSRSFMPHFHIPLQSGCDEVLQLMRRRYDTALF 284

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
              + +I+ V PD  I  D IVG  GET + F      +D +   Q   F YS R GT  
Sbjct: 285 ASKVKKIKEVMPDAFIGVDVIVGTRGETPEYFEQAYQFIDGLDVTQLHVFSYSERPGTQA 344

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWL 435
             +   V    K +R   L     ++  +F    +GQ + VL+EK  K    + G +   
Sbjct: 345 LKIEYVVSPEEKHQRSQRLLALSDQKTQAFYARHIGQTMPVLMEK-SKAGAPMHGFTENY 403

Query: 436 QSVVLNSKNHNIGDIIKVRITDVKI--STLYGELVV 469
             V + S +     +I VR+ +     + L G +++
Sbjct: 404 IRVEVESDDSLDNQVINVRLGEFNEEMTALKGTILI 439


>gi|237720003|ref|ZP_04550484.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|229450555|gb|EEO56346.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
          Length = 439

 Score =  336 bits (862), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 118/456 (25%), Positives = 212/456 (46%), Gaps = 20/456 (4%)

Query: 17  IVDQCIVPQRFFVK-SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREK 75
           ++D  +   +  V  + GC++N  ++  +  +    G       + AD+ V+NTC + E 
Sbjct: 1   MIDTTVFQNKTAVYYTLGCKLNFSETSTIGKILREAGVRTARKGEKADICVVNTCSVTEM 60

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135
           A +K    + R+       +K+  D  VVV GC AQ +  ++  +   V+VV+G +    
Sbjct: 61  ADKKCRQAIHRL-------VKQHPDAFVVVTGCYAQLKPGDVA-KIDGVDVVLGAEQKGE 112

Query: 136 LPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
           L + L   +  ++      + +D            +R      FL +Q+GCD FC++C +
Sbjct: 113 LLQYLGDLQKHEKGEAITTTTKDIRSFSP----SCSRGDRTRFFLKVQDGCDYFCSYCTI 168

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
           P+ RG   + +++ +V++AR+    G  EI L G N+    G        +F DL+ +L 
Sbjct: 169 PFARGRSRNGTIASMVEQARQAAAEGGKEIVLTGVNI----GDFGKTTGESFFDLVKALD 224

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
           +++G+ R R ++  P  ++D +I+        MP+ H+P+QSG D +L+ M RR+    +
Sbjct: 225 QVEGIERYRISSIEPNLLTDEIIEFVSHSRSFMPHFHIPLQSGCDEVLQLMRRRYDTALF 284

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
              + +I+ V PD  I  D IVG  GET + F      +D +   Q   F YS R GT  
Sbjct: 285 ASKVKKIKEVMPDAFIGVDVIVGTRGETPEYFEQAYQFIDGLDVTQLHVFSYSERPGTQA 344

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWL 435
             +   V    K +R   L     ++  +F    +GQ + VL+EK  K    + G +   
Sbjct: 345 LKIEYVVSPEEKHQRSQRLLALSDQKTQAFYARHIGQTMPVLMEK-SKAGAPMHGFTENY 403

Query: 436 QSVVLNSKNHNIGDIIKVRITDVKI--STLYGELVV 469
             V + S +     ++ VR+ D     + L G +++
Sbjct: 404 IRVEVESDDSLDNQVVNVRLGDFNEEMTALKGIILI 439


>gi|119384742|ref|YP_915798.1| MiaB-like tRNA modifying enzyme YliG [Paracoccus denitrificans
           PD1222]
 gi|238066602|sp|A1B3K8|RIMO_PARDP RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|119374509|gb|ABL70102.1| SSU ribosomal protein S12P methylthiotransferase [Paracoccus
           denitrificans PD1222]
          Length = 463

 Score =  336 bits (862), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 120/453 (26%), Positives = 200/453 (44%), Gaps = 31/453 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
              + S GC   + DS R+     ++GY        A  +++NTC   + A  +    +G
Sbjct: 31  TIGMVSLGCPKALVDSERILTRLRAEGYAISPDYKGAGAVIVNTCGFLDSAKAESLQAIG 90

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                            V+V GC+  AE E I    P V  V GPQ Y ++ + +  A  
Sbjct: 91  EALAENGK---------VIVTGCLG-AEPEYITGAHPSVLAVTGPQQYEQVLDAVHHA-- 138

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                       D F  L    G     R   ++L I EGC+  C FC++P  RG  +SR
Sbjct: 139 -------VPPSPDPFVDLLPASGVKLTPRHY-SYLKISEGCNHACKFCIIPDMRGKLVSR 190

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAW----RGKGLDGEKCTFSDLLYSLSEIKGLV 261
               V+ EA KL++ GV E+ ++ Q+ +A+    +     G +   +DL   L ++   V
Sbjct: 191 PAHAVIREAEKLVEAGVRELLVISQDTSAYGLDRKFATERGHRAHITDLARDLGQLGAWV 250

Query: 262 RLRYTTSHPRDMSDCLIKA-HGDLD-VLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           RL Y   +P       + A HG+   +++PYL +P Q     +LK M R   A      I
Sbjct: 251 RLHYVYPYPHVRDLIPLMAAHGESGGLVLPYLDIPFQHAHPDVLKRMARPAAAARTLDEI 310

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
              R+V PDI + S FIVG+PGET+ +F+  +D +D+    +   F+Y    G   +++ 
Sbjct: 311 AAWRAVCPDITLRSTFIVGYPGETEAEFQTLLDWLDEAQLDRVGCFQYENVKGARANDLP 370

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG--KLVGRSPWLQS 437
           + V ++VK +R     +K +    +   A VG  IEV+++    +    +    +P +  
Sbjct: 371 DHVPDDVKQDRWDRFMQKAQAISEAKLAAKVGHRIEVIVDAVDGDGATCRTKADAPEIDG 430

Query: 438 VVLNS---KNHNIGDIIKVRITDVKISTLYGEL 467
            +      ++   GDI+ V + +     L+G L
Sbjct: 431 NLFIDEGFEDLAPGDIVSVTVDEAGEYDLWGRL 463


>gi|307294310|ref|ZP_07574154.1| MiaB-like tRNA modifying enzyme YliG [Sphingobium chlorophenolicum
           L-1]
 gi|306880461|gb|EFN11678.1| MiaB-like tRNA modifying enzyme YliG [Sphingobium chlorophenolicum
           L-1]
          Length = 460

 Score =  336 bits (862), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 127/481 (26%), Positives = 209/481 (43%), Gaps = 53/481 (11%)

Query: 11  AHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC 70
           A +++  + +     +  + S GC   + DS R+     S GY+       AD++++NTC
Sbjct: 3   APIMATKIPEAP---KVGMVSLGCPKALVDSERILTKLRSDGYQMSADYAGADVVLVNTC 59

Query: 71  HIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGP 130
              + A E+    +G              +  V+V GC+   E E I  + P V  V G 
Sbjct: 60  GFLDSAKEESLEAIGEA---------IAENGRVIVTGCMGN-EAELIRAKFPQVLAVTGA 109

Query: 131 QTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190
             Y  +   +  A            V + F  L + +GG        ++L I EGC+  C
Sbjct: 110 HQYEAVVNAVHEA---------SPPVPNAFVDL-VPEGGLKLTPRHYSYLKISEGCNHRC 159

Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE------- 243
           +FC++P  RG   SR +  V+ EA KL+  G  E+ ++ Q+ +A  G     E       
Sbjct: 160 SFCIIPSLRGDLASRRVDAVLREAEKLVHAGTKELLIISQDTSA-YGVDTRHETRQWKGR 218

Query: 244 --KCTFSDLLYSLSEI------KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPV 295
             +   +DL   L ++         VRL Y   +P       + A G   +L PYL +P 
Sbjct: 219 DVRAHMTDLARELGQLRTAEGTPPWVRLHYVYPYPHVDQVIPLMADG---LLTPYLDIPF 275

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
           Q  +  +LK+M R     +    I + R + PDIAI S F+VGFPGET+ DF   +  +D
Sbjct: 276 QHAAPNVLKAMKRPANEAKVLDRIRKWRDICPDIAIRSSFVVGFPGETEADFDYLLQWLD 335

Query: 356 KIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIE 415
           +    +  +F++ P  G   +++   V E VK ER   + +K      +   A VG+++ 
Sbjct: 336 EAQLDRVGAFRFEPVEGAAANDLPGAVPEEVKEERYQRIMEKTAAISAAKLQAKVGRVLP 395

Query: 416 VLIEKHGK-EKGKLVG-------RSPWLQSVVL---NSKNHNIGDIIKVRITDVKISTLY 464
           V+I++ G+ ++   VG        +P +   V      +    G I+ V I D     LY
Sbjct: 396 VIIDEVGEADEDGSVGATARSQADAPEIDGNVFLRDVGEGLAPGSILNVLIEDADEHDLY 455

Query: 465 G 465
           G
Sbjct: 456 G 456


>gi|293368846|ref|ZP_06615450.1| MiaB-like protein [Bacteroides ovatus SD CMC 3f]
 gi|292636151|gb|EFF54639.1| MiaB-like protein [Bacteroides ovatus SD CMC 3f]
          Length = 439

 Score =  336 bits (862), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 117/456 (25%), Positives = 211/456 (46%), Gaps = 20/456 (4%)

Query: 17  IVDQCIVPQRFFVK-SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREK 75
           ++D  +   +  V  + GC++N  ++  +  +    G       + AD+ V+NTC + E 
Sbjct: 1   MIDTTVFQNKTAVYYTLGCKLNFSETSTIGKILREAGVRTARKGEKADICVVNTCSVTEM 60

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135
           A +K    + R+       +K+     VVV GC AQ +  ++  +   V+VV+G +    
Sbjct: 61  ADKKCRQAIHRL-------VKQHPGAFVVVTGCYAQLKPGDVA-KIDGVDVVLGAEQKGE 112

Query: 136 LPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
           L + L   +  ++      + +D            +R      FL +Q+GCD FC++C +
Sbjct: 113 LLQYLGDLQKHEKGEAITTTTKDIRSFSP----SCSRGDRTRFFLKVQDGCDYFCSYCTI 168

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
           P+ RG   + +++ +V++AR+    G  EI L G N+    G        +F DL+ +L 
Sbjct: 169 PFARGRSRNGTIASMVEQARQAAAEGGKEIVLTGVNI----GDFGKTTGESFFDLVKALD 224

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
           +++G+ R R ++  P  ++D +I+        MP+ H+P+QSG D +L+ M RR+    +
Sbjct: 225 QVEGIERYRISSIEPNLLTDEIIEFVSHSRSFMPHFHIPLQSGCDEVLQLMRRRYDTALF 284

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
              + +I+ V PD  I  D IVG  GET + F      +D +   Q   F YS R GT  
Sbjct: 285 ASKVKKIKEVMPDAFIGVDVIVGTRGETPEYFEQAYQFIDGLDVTQLHVFSYSERPGTQA 344

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWL 435
             +   V    K +R   L     ++  +F    +GQ + VL+EK  K    + G +   
Sbjct: 345 LKIEYVVSPEEKHQRSQRLLALSDQKTQAFYARHIGQTMPVLMEK-SKAGAPMHGFTENY 403

Query: 436 QSVVLNSKNHNIGDIIKVRITDVKI--STLYGELVV 469
             V + S +     ++ VR+ D     + L G +++
Sbjct: 404 IRVEVESDDSLDNQVVNVRLGDFNEEMTALKGIILI 439


>gi|160885195|ref|ZP_02066198.1| hypothetical protein BACOVA_03193 [Bacteroides ovatus ATCC 8483]
 gi|156109545|gb|EDO11290.1| hypothetical protein BACOVA_03193 [Bacteroides ovatus ATCC 8483]
          Length = 439

 Score =  336 bits (862), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 116/456 (25%), Positives = 210/456 (46%), Gaps = 20/456 (4%)

Query: 17  IVDQCIVPQRFFVK-SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREK 75
           ++D  +   +  V  + GC++N  ++  +  +    G       + AD+ V+NTC + E 
Sbjct: 1   MIDTTVFQNKTAVYYTLGCKLNFSETSTIGKILREAGVRTARKGEKADICVVNTCSVTEM 60

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135
           A +K    + R+       +K+  D  VVV GC AQ +  ++  +   V+VV+G +    
Sbjct: 61  ADKKCRQAIHRL-------VKQHPDAFVVVTGCYAQLKPGDVA-KIDGVDVVLGAEQKGE 112

Query: 136 LPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
           L + L   +  ++      + +D            +R      FL +Q+GCD FC++C +
Sbjct: 113 LLQYLGDLQKHEKGEAITTTTKDIRSFSP----SCSRGDRTRFFLKVQDGCDYFCSYCTI 168

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
           P+ RG   + +++ +V++ R+    G  EI L G N+    G        +F DL+ +L 
Sbjct: 169 PFARGRSRNGTIASMVEQTRQAAAEGGKEIVLTGVNI----GDFGKTTGESFFDLVKALD 224

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
           ++ G+ R R ++  P  ++D +I+        MP+ H+P+QSG D +L+ M RR+    +
Sbjct: 225 QVDGIERYRISSIEPNLLTDEIIEFVSHSRSFMPHFHIPLQSGCDEVLQLMRRRYDTALF 284

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
              + +I+ V PD  I  D IVG  GET + F      +D +   Q   F YS R GT  
Sbjct: 285 ASKVKKIKEVMPDAFIGVDVIVGTRGETPEYFEQAYQFIDGLDVTQLHVFSYSERPGTQA 344

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWL 435
             +   V    K +R   L     ++  +F    +GQ + VL+EK  K    + G +   
Sbjct: 345 LKIEYVVSPEEKHQRSQRLLALSDQKTQAFYARHIGQTMPVLMEK-SKAGAPMHGFTENY 403

Query: 436 QSVVLNSKNHNIGDIIKVRITDVKI--STLYGELVV 469
             V + S +     ++ VR+ +     + L G +++
Sbjct: 404 IRVEVESDDSLDNQVVNVRLGEFNEEMTALKGTILI 439


>gi|218194881|gb|EEC77308.1| hypothetical protein OsI_15965 [Oryza sativa Indica Group]
          Length = 629

 Score =  336 bits (862), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 121/465 (26%), Positives = 212/465 (45%), Gaps = 27/465 (5%)

Query: 9   GVAHMVSQIVDQCIVPQRFFVKSYGCQMNVY---DSLRMEDMFFSQGYERVNSMDDADLI 65
            VA    Q   +    Q  +VK++GC  N     DS  M     + GY      + ADL 
Sbjct: 42  RVAQTRPQPEARIPGTQTIYVKTFGCSHNQASFSDSEYMSGQLSAFGYAITEEPEGADLW 101

Query: 66  VLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVN 125
           ++NTC ++  +   + + + + ++             +VVAGCV Q   +  L+    ++
Sbjct: 102 LINTCTVKNPSQSAMTTLISKCKSANKP---------LVVAGCVPQGSRD--LKELEGIS 150

Query: 126 VVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEG 185
            V+G Q   R+ E++E    G  V             L  +D    RK      L I  G
Sbjct: 151 -VIGVQQIDRVVEVVEETLKGHEVRLLSRKT------LPSLDLPKVRKNKFIEILPINVG 203

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C   CT+C   + RG   S ++  +VD  + ++  GV EI L  ++  A  G+ +     
Sbjct: 204 CLGACTYCKTKHARGHLGSYTIESLVDRVKIVVSEGVREIWLSSEDTGA-YGRDIGTNLP 262

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCL--IKAHGDLDVLMPYLHLPVQSGSDRIL 303
              + + +         LR   ++P  + + L  I +      +  +LH+PVQSGSD +L
Sbjct: 263 NLLNGIVAELPADRSTMLRIGMTNPPFILEHLKEIASVLCHPCVYSFLHVPVQSGSDAVL 322

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
            +MNR +T  E+R+++D +  + P + I++D I GFPGETD+DF  T++LV +  + Q  
Sbjct: 323 TAMNREYTVSEFRRVVDTLCELVPGMQIATDIICGFPGETDEDFSQTVNLVKQYQFPQVH 382

Query: 364 SFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK 423
             ++ PR GTP + M ++V      +R   L      +  S      G++  + I +   
Sbjct: 383 ISQFYPRPGTPAARM-KKVPSVEVKKRSRELTSVF--ESFSPYQGMEGKVERIWITEIAT 439

Query: 424 EKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           +   LVG +     V++ + +  +G    V+IT V   +++GE++
Sbjct: 440 DGVHLVGHTKGYIQVLVIAPDSMLGTSADVKITSVGRWSVFGEVI 484


>gi|195335207|ref|XP_002034266.1| GM19985 [Drosophila sechellia]
 gi|194126236|gb|EDW48279.1| GM19985 [Drosophila sechellia]
          Length = 556

 Score =  336 bits (861), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 124/462 (26%), Positives = 210/462 (45%), Gaps = 27/462 (5%)

Query: 14  VSQIVDQCIVP--QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCH 71
               + + ++P  Q+ FVK++GC  N  DS  M     + GY      ++ADL +LN+C 
Sbjct: 58  PKPKIHESVIPGTQKVFVKTWGCAHNNSDSEYMAGQLAAYGYRLSGK-EEADLWLLNSCT 116

Query: 72  IREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ 131
           ++  + +   + +                  +VVAGCV Q   +           V+G Q
Sbjct: 117 VKNPSEDTFRNEIK---------SGMQNGKYIVVAGCVPQGAPKSDYLNG---LSVIGVQ 164

Query: 132 TYYRLPELLERARFGKRVVDTDYSVEDKFERLS--IVDGGYNRKRGVTAFLTIQEGCDKF 189
              R+ E++E    G  V       +    R++   +     RK  +   ++I  GC   
Sbjct: 165 QIDRVVEVVEETLKGHSVQLLQNKKKVLGRRVAGAPLSLPKVRKNPLIEIISINSGCLNQ 224

Query: 190 CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSD 249
           CT+C   + RG   S    +VV+ AR+    G CEI L  ++  A  G+ +     +  +
Sbjct: 225 CTYCKTKHARGDLASYPPEEVVERARQSFAEGCCEIWLTSEDTGA-YGRDI---GSSLPE 280

Query: 250 LLYSLSE-IKGLVRLRYTTSHPRDMSDCLIKAHG--DLDVLMPYLHLPVQSGSDRILKSM 306
           LL+ L E I     LR   ++P  + + L +         +  +LH+PVQSGSD +L  M
Sbjct: 281 LLWKLVEVIPENCMLRVGMTNPPYILEHLEEVAKVMQHPRVYSFLHVPVQSGSDSVLGEM 340

Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
            R +   ++  ++D +R   P + I++D I GFP ET+DDF  TM L  K  +   F  +
Sbjct: 341 KREYCRQDFEHVVDFLRERVPGVTIATDIICGFPTETEDDFEETMTLCAKYRFPSLFINQ 400

Query: 367 YSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG 426
           + PR GTP + M E++  N+  +R   L               VG+I  VL+ +   +K 
Sbjct: 401 FFPRPGTPAAKM-ERIPANLVKKRTKRLTDLFY--SYEPYAERVGEIYTVLVTEVSHDKL 457

Query: 427 KLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
             VG +   + V+L  +++ +G  + VRIT     ++ GE++
Sbjct: 458 HYVGHNKSYEQVLLPMRDNLLGTRVNVRITSASKFSMVGEIL 499


>gi|160901569|ref|YP_001567150.1| MiaB-like tRNA modifying enzyme YliG [Petrotoga mobilis SJ95]
 gi|238066434|sp|A9BEU9|RIMO_PETMO RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|160359213|gb|ABX30827.1| MiaB-like tRNA modifying enzyme YliG [Petrotoga mobilis SJ95]
          Length = 435

 Score =  336 bits (861), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 124/452 (27%), Positives = 215/452 (47%), Gaps = 27/452 (5%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++F +   GC  N  D    + +  S+GY+  ++   A+ I ++TC   E+A ++    +
Sbjct: 2   KKFHIVKLGCPKNDADMEIFKGLLQSKGYKYESNPQLANYIFIDTCGFIEEAKKESIETI 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
               +LK++      +L V+  GC+ Q   ++IL+  P ++ + G         ++E+  
Sbjct: 62  FEYVSLKDN----NKNLKVIPIGCLTQRYFDDILKDIPEIDGLYGV---LSPKTIVEKIE 114

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G+     D        ++  +           A++ I +GC + C FC +P  +G   S
Sbjct: 115 NGEYFFKRDIPETLYDCKIRAIP------DSHYAYVKIGDGCSRNCAFCSIPTFKGKPKS 168

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           RS+ ++ +E   L+  GV EI L+ Q+ N   G   + +K    DLL  L+ IKG   +R
Sbjct: 169 RSIEEINEEVEFLVSKGVKEIILVSQD-NTLYGID-NYQKQALPDLLDKLNNIKGKFWIR 226

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
               HP  +S+ +I++    + ++ Y  +P+Q  SD+IL+SM R     E  ++ ++IR 
Sbjct: 227 VMYLHPDFLSEEIIESIHRNEKVLNYFDVPIQHISDKILQSMGRHKKRNELIKLFEKIRK 286

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
                AI +  +VGFPGE  +DF   +D V +I + +  SF +S    T    + EQ+DE
Sbjct: 287 EP--SAIRTTLMVGFPGEKAEDFEELVDFVKEIKFERMGSFIFSKEENTKSFTLPEQIDE 344

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVV- 439
            +K +R   L     E   +  +  +G+ +EVL+E+  KE    VGRS    P +   V 
Sbjct: 345 QIKKQRQNELMTVQSEISKNIMEKYIGETLEVLLEE--KEDNVYVGRSYLDAPEIDGNVY 402

Query: 440 ---LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                 K    G+ +KV IT      L GE+V
Sbjct: 403 IKNFGDKELTFGNFVKVTITGSYEYDLEGEIV 434


>gi|49475606|ref|YP_033647.1| hypothetical protein BH08410 [Bartonella henselae str. Houston-1]
 gi|81648389|sp|Q6G5E0|RIMO_BARHE RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|49238413|emb|CAF27640.1| hypothetical protein BH08410 [Bartonella henselae str. Houston-1]
          Length = 437

 Score =  336 bits (861), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 127/457 (27%), Positives = 207/457 (45%), Gaps = 36/457 (7%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           +   R    S GC   + DS R+     S+GYE       ADL+++NTC   + A  +  
Sbjct: 1   MAAPRISFVSLGCPKALVDSERIITSLRSEGYEISRKHQGADLVIVNTCGFLDSARNESL 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           + +                  V+V GC+  A+ + I +  P V  + GPQ Y  + + + 
Sbjct: 61  ANIDEALKKNGK---------VIVTGCLG-ADPDVIRQVYPNVLAITGPQAYESVIQAVH 110

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
            A            V D F  L    G     R   A+L I EGC   C+FC++P  RG 
Sbjct: 111 TA---------IPPVHDPFIDLVPPQGIRLTPRHY-AYLKISEGCSNRCSFCIIPTLRGN 160

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE--------KCTFSDLLYS 253
            +SR +S V+ EA KL+  GV E+ ++ Q+ +A+       E        K  F DL   
Sbjct: 161 LMSRPISDVLREAEKLVQAGVKELLVISQDTSAYGIDLKYLETPWKDRTVKTKFFDLCRE 220

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
           L  +   +R+ Y   +P      +I+   +   ++PYL +P Q  S  +L++M R     
Sbjct: 221 LGNMGIWIRMHYVYPYPHVD--DVIEFMAE-KKILPYLDIPFQHASPTVLRNMKRPALVK 277

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
           +  + I++ R + PD+ + S FIVGFPGET +DF   ++ +D++   +A  FKY    G 
Sbjct: 278 KINRRIEKWRIICPDLTLRSTFIVGFPGETHEDFNILLEWLDEVKIERAGCFKYEAVKGA 337

Query: 374 PGSNM-LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE--KGKLVG 430
             +++ LE + E VK  R      K ++         VG+ ++VLI++   +  KG+   
Sbjct: 338 VANDLGLESIPEEVKENRWHRFMAKQQKISTHLLKKKVGKRLQVLIDESQGKIAKGRSQY 397

Query: 431 RSPWLQSVVLNSK--NHNIGDIIKVRITDVKISTLYG 465
            +P +  VV  S      +G+ + V+I       LYG
Sbjct: 398 DAPEIDGVVHISSRRPLRVGEFVTVKIERSDAYDLYG 434


>gi|238650895|ref|YP_002916751.1| tRNA 2-methylthioadenosine synthase-like protein [Rickettsia
           peacockii str. Rustic]
 gi|238624993|gb|ACR47699.1| tRNA 2-methylthioadenosine synthase-like protein [Rickettsia
           peacockii str. Rustic]
          Length = 421

 Score =  336 bits (861), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 115/436 (26%), Positives = 207/436 (47%), Gaps = 32/436 (7%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           + ++GC++N+Y+S  +       G +        ++ + NTC + + A ++    + + +
Sbjct: 14  IVTFGCRLNIYESEIIRKNLELSGID--------NVAIFNTCAVTKAAEKQARQAIRKAK 65

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
                  K   DL ++V GC AQ    ++    P V+ V+G +          +    K 
Sbjct: 66  -------KNNPDLKIIVTGCSAQTSP-QMYGNMPEVDKVIGNEEKLLPNYY--QITDAKI 115

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
            V+   SV++    L       +R     AF+ +Q GCD FCTFC++PY RG   S ++ 
Sbjct: 116 TVNDIMSVKETASHLVSCFDCKSR-----AFIQVQNGCDHFCTFCIIPYGRGKSRSVAIG 170

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
            + ++ + L+ NG  E+   G +V A  G  L G       +   L+ +  L RLR ++ 
Sbjct: 171 AIAEQVKHLVLNGFKEVVFTGVDVTA-YGSDLPGSPTFAQMIKRVLNLVPALKRLRLSSI 229

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
              ++ D L +     + +MP+ H+ +Q+G D ILK M RRH      +   ++R++RP+
Sbjct: 230 DVAEIDDELFELIAYSERIMPHFHISLQAGDDMILKRMKRRHNRANVIEFCRKLRAIRPE 289

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           ++  +D I GFP ET + F  T  L+ +        F YS R GTP + M  QV +N++ 
Sbjct: 290 VSFGADIIAGFPTETPEMFENTRKLISEAELQYLHVFPYSEREGTPAARMP-QVPKNIRK 348

Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIG 448
           ER   L+++ + Q   F    +GQ +E+L+E +       +  +     V L+ K   IG
Sbjct: 349 ERAAILRQEGQNQLTEFFKKHIGQKVELLVENNN------IAHTENFIPVKLD-KPLEIG 401

Query: 449 DIIKVRITDVKISTLY 464
            I K ++  ++ + + 
Sbjct: 402 QIFKAKLVAIEENYMK 417


>gi|330902117|gb|EGH33396.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Pseudomonas
           syringae pv. japonica str. M301072PT]
          Length = 294

 Score =  336 bits (861), Expect = 7e-90,   Method: Composition-based stats.
 Identities = 135/293 (46%), Positives = 189/293 (64%), Gaps = 2/293 (0%)

Query: 178 AFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG 237
           A++++ EGC K+CTFCVVPYTRG E+SR    V+ E   L +NGV E+TLLGQNVN +RG
Sbjct: 1   AYVSVMEGCSKYCTFCVVPYTRGEEVSRPFDDVLSEVIHLAENGVREVTLLGQNVNGYRG 60

Query: 238 KGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQS 297
              DG     +DL+  ++ + G+ R+RYTTSHP + SD LI+AH ++  L+ +LHLPVQS
Sbjct: 61  TTHDGRVADLADLIRVVAAVDGIDRIRYTTSHPLEFSDSLIQAHAEVPELVKHLHLPVQS 120

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
           GSDRIL +M R HT  EY+  + ++R+  P I+ISSDFIVGFPGET+ DF  TM L++ +
Sbjct: 121 GSDRILAAMKRNHTTLEYKSRLRKLRAAVPGISISSDFIVGFPGETEKDFDNTMKLIEDV 180

Query: 358 GYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVL 417
           G+  +FSF YSPR GTP +++ +   E +K ERL  LQ +L +Q    +   VG I  +L
Sbjct: 181 GFDFSFSFVYSPRPGTPAADLKDDTPEALKKERLAALQHRLNQQGFEISRQMVGSIQRIL 240

Query: 418 IEKHG-KEKGKLVGRSPWLQSVVLNSKNH-NIGDIIKVRITDVKISTLYGELV 468
           +  +  K+ G+L GR+   + V     N   IG    V I D +  +L G L+
Sbjct: 241 VTDYSKKDPGELQGRTENNRIVNFRCDNPKLIGQFADVHIDDAQPHSLRGSLL 293


>gi|255691410|ref|ZP_05415085.1| 2-methylthioadenine synthetase [Bacteroides finegoldii DSM 17565]
 gi|260623056|gb|EEX45927.1| 2-methylthioadenine synthetase [Bacteroides finegoldii DSM 17565]
          Length = 439

 Score =  335 bits (860), Expect = 7e-90,   Method: Composition-based stats.
 Identities = 121/456 (26%), Positives = 210/456 (46%), Gaps = 20/456 (4%)

Query: 17  IVDQCIVPQRFFVK-SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREK 75
           ++D  +   +  V  + GC++N  ++  +  +    G       + AD+ V+NTC + E 
Sbjct: 1   MIDTTVFQDKTAVYYTLGCKLNFSETSTIGKILREAGVRTARKGEKADICVVNTCSVTEM 60

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135
           A +K    + R+       +K+     VVV GC AQ +  ++  +   V+VV+G +    
Sbjct: 61  ADKKCRQAIHRL-------VKQHPGAFVVVTGCYAQLKPGDVA-KIDGVDVVLGAEQKGE 112

Query: 136 LPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
           L + L   +  ++      + +D            +R      FL +Q+GCD FC++C +
Sbjct: 113 LLQYLGNLQKHEKGEAITTATKDIRSFSP----SCSRGDRTRFFLKVQDGCDYFCSYCTI 168

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
           P+ RG   + +++ +V++AR+    G  EI L G N+    G        TF DL+ +L 
Sbjct: 169 PFARGRSRNGTIASMVEQARQAAAEGGKEIVLTGVNI----GDFGKTTGETFFDLVQALD 224

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
           +I+G+ R R ++  P  ++D +I+        MP+ H+P+QSG D +LK M RR+    +
Sbjct: 225 QIEGIERYRISSIEPNLLTDEIIEFVSHSRSFMPHFHIPLQSGCDEVLKLMRRRYDTALF 284

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
              + +I+ V PD  I  D IVG  GET + F      +  +   Q   F YS R GT  
Sbjct: 285 ASKVKKIKEVMPDAFIGVDVIVGTRGETAEFFEQAYRFISGLDVTQLHVFSYSERPGTQA 344

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWL 435
             +   V    K +R   L     E+  +F    +GQ + VL+EK  K    + G +   
Sbjct: 345 LKIDYVVSPEEKHQRSQRLLALSDEKTQAFYARHIGQTMSVLLEK-SKGNTPMHGFTKNY 403

Query: 436 QSVVLNSKNHNIGDIIKVRITD--VKISTLYGELVV 469
             V + S N     ++ VR+ D     + L G +++
Sbjct: 404 IRVEVGSDNSLDNQVVNVRLGDFNGDKTALKGTILI 439


>gi|291087073|ref|ZP_06345323.2| tRNA-I(6)A37 thiotransferase enzyme MiaB [Clostridium sp. M62/1]
 gi|291076389|gb|EFE13753.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Clostridium sp. M62/1]
          Length = 452

 Score =  335 bits (860), Expect = 7e-90,   Method: Composition-based stats.
 Identities = 133/448 (29%), Positives = 216/448 (48%), Gaps = 23/448 (5%)

Query: 16  QIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREK 75
           ++    +  ++  + + GC++N Y++  M+ M    GYE V   + AD+ V+NTC +   
Sbjct: 2   KLQKGSVKMRKAALHNLGCKVNAYETEAMQQMLEDAGYEIVPFREGADVYVINTCSVTNV 61

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135
           A +K    L R +       K     +VV AGC  QA GEE+ ++   V++V+G      
Sbjct: 62  ADKKSRQMLHRAK-------KMNPSAVVVAAGCYVQAAGEEL-KKDEAVDLVIGNNRKKD 113

Query: 136 LPELLERARFGKRVVD--TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC 193
           L E+LER        D   D     ++E+L I            AF+ +Q+GC++FC++C
Sbjct: 114 LVEVLERYFNEHEGTDDIIDIGKTSEYEKLHI----RKIADHTRAFIKVQDGCNQFCSYC 169

Query: 194 VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK-----CTFS 248
           ++PYTRG   SRS+  VV E   L  +G  EI L G +++++        +         
Sbjct: 170 IIPYTRGRVRSRSMEDVVQEVEALAASGYKEIVLTGIHLSSYGADFKRTAENPEAAADLL 229

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
            L+  L  I G+ R+R  +  PR ++D   +    L    P+ HL +QSG +  LK MNR
Sbjct: 230 SLIVRLDRIPGIERIRLGSLEPRIITDEFAETLAGLKSFCPHFHLSLQSGCNETLKRMNR 289

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
            +T  +Y    + +R    + AI++D IVGFP ET+++F  T   + +I + +   FKYS
Sbjct: 290 HYTTEDYEARCEILRRYFHNPAITTDVIVGFPQETEEEFEETRQFLKRIHFYEMHIFKYS 349

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-- 426
            R GT  + M  QV E  KAER   L     +  + +    +G+  EVL+E+     G  
Sbjct: 350 RREGTRAAVMEGQVPEPKKAERSDILLALEEQMSLEYRRTFLGKEEEVLLEERISVDGED 409

Query: 427 KLVGRSPWLQSVVLNSKNHNIGDIIKVR 454
            +VG +      V+  +       + VR
Sbjct: 410 YMVGHTRQYVKAVVPYREGLKN--VTVR 435


>gi|170761706|ref|YP_001787717.1| RNA modification protein [Clostridium botulinum A3 str. Loch Maree]
 gi|238065367|sp|B1KWJ5|RIMO_CLOBM RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|169408695|gb|ACA57106.1| RNA modification enzyme, MiaB family [Clostridium botulinum A3 str.
           Loch Maree]
          Length = 445

 Score =  335 bits (860), Expect = 7e-90,   Method: Composition-based stats.
 Identities = 130/449 (28%), Positives = 215/449 (47%), Gaps = 21/449 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +  + S GC  N  DS  M      +  E V    +A +I++NTC   E A E+  + + 
Sbjct: 5   KVALVSLGCDKNRIDSELMLYKLNEE-AELVKDPKEAQVIIVNTCGFIETAKEESINTIL 63

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER-AR 144
           ++ + K    K     ++VV GC+ Q    E+    P +++++G   Y +L E ++   +
Sbjct: 64  QMASYK----KTHNCKVLVVTGCLTQRYKGELKELIPEMDIMLGVNDYDKLLESIKVFLK 119

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G++     YS     E   I+          TA++ I EGC+ FCT+C +P  RG   S
Sbjct: 120 SGEKSFYHKYSDTKINEGNRIL-----TTPTYTAYVRIAEGCNNFCTYCAIPRIRGKYRS 174

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R    ++ E   L   GV EI L+ Q+     G  + G+K    +LL  +S+++G+  +R
Sbjct: 175 RKKENILKEVENLAKQGVKEIILIAQDTTM-YGIDIHGKKV-LHELLRDISKVEGVKWIR 232

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
               +P ++++ LI+   + D +  YL LP+Q  S+ +LK M R+ T      II ++R 
Sbjct: 233 LLYCYPEEITEELIEEIKNNDKVCKYLDLPIQQISNSVLKRMGRKTTKETIINIIKKLRK 292

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
               I + +  IVGFPGET+ +F    + V  I   +   FKYS   GT  + M EQ+DE
Sbjct: 293 EIEGITLRTSLIVGFPGETEGEFSELKEFVSDIKLDKLGVFKYSKEEGTSAALMEEQIDE 352

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVVL 440
            +K +R   +    +      N   +G+I EV++E    ++    GR    SP +   + 
Sbjct: 353 EIKEKREEEIMILQQSISKDINKEKIGKIYEVIVEGI--KEDMYYGRNYEMSPEIDGEIY 410

Query: 441 --NSKNHNIGDIIKVRITDVKISTLYGEL 467
               +N  IGDIIKV++T      L G +
Sbjct: 411 FEKDENVKIGDIIKVKVTHSLEYDLIGVV 439


>gi|319899903|ref|YP_004159631.1| MiaB-like tRNA modifying enzyme [Bacteroides helcogenes P 36-108]
 gi|319414934|gb|ADV42045.1| MiaB-like tRNA modifying enzyme [Bacteroides helcogenes P 36-108]
          Length = 439

 Score =  335 bits (860), Expect = 7e-90,   Method: Composition-based stats.
 Identities = 120/440 (27%), Positives = 209/440 (47%), Gaps = 19/440 (4%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N  ++  +  +    G   V   + AD+ V+NTC + E A +K    + R+   
Sbjct: 16  TLGCKLNFSETSTIGKILREAGVRTVRKGEKADICVVNTCSVTEVADKKCRQAIHRL--- 72

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               +K+     VVV GC AQ + E +  +   V+VV+G +    L + L   +  +   
Sbjct: 73  ----VKQHPGAFVVVTGCYAQLKPEAVA-KIEGVDVVLGAEQKKDLLQYLGNLQKHE--- 124

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
            T  +     + +       +R      FL +Q+GCD +C++C +P+ RG   + +++ +
Sbjct: 125 -TGEAYTSVLKDIHSFAPSCSRGDRTRFFLKVQDGCDYYCSYCTIPFARGRSRNGTVASM 183

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270
           V++AR+ + +G  EI L G N+    G        TF DL+ +L  ++G+ R R ++  P
Sbjct: 184 VEQARQAVADGGKEIVLTGVNI----GDFGKSTGETFFDLVKALDGVEGIERYRISSIEP 239

Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330
             ++D +I+        MP+ H+P+QSGSD +LK M RR+    +   I RI+ V PD  
Sbjct: 240 NLLTDEIIEYVAGSRRFMPHFHIPLQSGSDEVLKLMRRRYDTALFASKIRRIKEVMPDAF 299

Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER 390
           I  D IVG  GET++ F      +  +   Q   F YS R GT    +   V    K ER
Sbjct: 300 IGVDVIVGTRGETEEYFEQAYQFIGSMDVTQLHVFSYSERPGTQALKIDHVVSPAEKHER 359

Query: 391 LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDI 450
              L +   E+  +F    +G ++ VL+E+  K+   + G +     V +   +     +
Sbjct: 360 SRRLLELSEEKTRAFYARHIGSVMPVLLER-SKQGAPMHGFTANYIRVEVPHDDSLDNQV 418

Query: 451 IKVRITDVKIST--LYGELV 468
           + VR+ D    +  L GE++
Sbjct: 419 MPVRLGDFNEDSTALSGEVL 438


>gi|157828452|ref|YP_001494694.1| hypothetical protein A1G_03275 [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|165933167|ref|YP_001649956.1| tRNA 2-methylthioadenosine synthase-like protein [Rickettsia
           rickettsii str. Iowa]
 gi|157800933|gb|ABV76186.1| hypothetical protein A1G_03275 [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|165908254|gb|ABY72550.1| tRNA 2-methylthioadenosine synthase-like protein [Rickettsia
           rickettsii str. Iowa]
          Length = 421

 Score =  335 bits (860), Expect = 7e-90,   Method: Composition-based stats.
 Identities = 116/436 (26%), Positives = 207/436 (47%), Gaps = 32/436 (7%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V ++GC++N+Y+S  +       G +        ++ + NTC + + A ++    + + +
Sbjct: 14  VVTFGCRLNIYESEIIRKNLELSGID--------NVAIFNTCAVTKAAEKQARQAIRKAK 65

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
                  K   DL ++V GC AQ    ++    P V+ V+G +          +    K 
Sbjct: 66  -------KNNPDLKIIVTGCSAQTSP-QMYGNMPEVDKVIGNEEKLLPNYY--QITDAKI 115

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
            V+   SV++    L       +R     AF+ +Q GCD FCTFC++PY RG   S ++ 
Sbjct: 116 TVNDIMSVKETASHLVSSFDCKSR-----AFIQVQNGCDHFCTFCIIPYGRGKSRSVAIG 170

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
            + ++ + L+ NG  E+   G +V A  G  L G       +   L+ +  L RLR ++ 
Sbjct: 171 AIAEQVKHLVLNGFKEVVFTGVDVTA-YGSDLPGSPTFAQMIKRVLNLVPELKRLRLSSI 229

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
              ++ D L +     + +MP+ H+ +Q+G D ILK M RRH      +   ++R++RP+
Sbjct: 230 DVAEIDDELFELIAYSERIMPHFHISLQAGDDMILKRMKRRHNRANVIEFCRKLRAIRPE 289

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           ++  +D I GFP ET + F  T  L+ +        F YS R GTP + M  QV +N++ 
Sbjct: 290 VSFGADIIAGFPTETPEMFENTRKLISEAELQYLHVFPYSEREGTPAARMP-QVPKNIRK 348

Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIG 448
           ER   L+++ + Q   F    +GQ +E+L+E +       +  +     V L+ K   IG
Sbjct: 349 ERAAILRQEGQNQLTEFFKKHIGQKVELLVENNN------IAHTENFIPVKLD-KPLEIG 401

Query: 449 DIIKVRITDVKISTLY 464
            I K ++  ++ + + 
Sbjct: 402 QIFKAKLVAIEENYMK 417


>gi|160895345|ref|ZP_02076116.1| hypothetical protein CLOL250_02904 [Clostridium sp. L2-50]
 gi|156863038|gb|EDO56469.1| hypothetical protein CLOL250_02904 [Clostridium sp. L2-50]
          Length = 439

 Score =  335 bits (860), Expect = 8e-90,   Method: Composition-based stats.
 Identities = 116/423 (27%), Positives = 224/423 (52%), Gaps = 18/423 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +     + GC++N Y++  M ++    G   V+  + AD+ ++NTC +   A +K    +
Sbjct: 5   KTVAPLTLGCKVNQYETDGMIELLKEAGMTAVSFEEKADVYLINTCSVTNMADKKSRQMI 64

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R + L         D +V+ AGC  QA  ++++     +++++G      +  +LE   
Sbjct: 65  HRAKKL-------NPDAVVIAAGCYVQAAKDKLM-EDDRISIIIGNNKKKDIVRILEDYL 116

Query: 145 FGKRVVD--TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
                 +   D S E ++E L+I     +      A++ IQ+GC++FC++C++PY RG  
Sbjct: 117 QAGVTDEGMLDISAEKEYEPLTI----NSTLEHTRAYVKIQDGCNQFCSYCIIPYVRGRI 172

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR ++ +++E  +L   GV EI L G ++++  GK  + E    +D++ ++S+I+ + R
Sbjct: 173 RSRDIASIIEEVERLALTGVKEIVLTGIHISS-YGKDKENE-VGLADVIDAISKIESIKR 230

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R  +  P  ++D  I    D + + P+ HL +QSG + +LK MNR++T  EY +  + +
Sbjct: 231 IRLGSLEPSIITDEFIDRIVDNEKVCPHFHLSLQSGCNTVLKRMNRKYTCEEYFEKCEML 290

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R      A+++D IVGFPGET+++FR T+D + K+   +   FK+SPR GT  + M +QV
Sbjct: 291 RKAFDRPALTTDVIVGFPGETEEEFRETVDYLTKLNLYEMHIFKFSPRQGTVAAGMKDQV 350

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK--LVGRSPWLQSVVL 440
              +K +R   L       + ++  +  G+ ++VL+E+  + +GK    G +     + +
Sbjct: 351 APEIKNQRSDVLLALSERNKQAYEASFRGENLDVLVEEKVRREGKDGYRGHTERYMDIFV 410

Query: 441 NSK 443
             +
Sbjct: 411 EEE 413


>gi|34580504|ref|ZP_00141984.1| hypothetical protein [Rickettsia sibirica 246]
 gi|28261889|gb|EAA25393.1| unknown [Rickettsia sibirica 246]
          Length = 416

 Score =  335 bits (860), Expect = 8e-90,   Method: Composition-based stats.
 Identities = 116/436 (26%), Positives = 207/436 (47%), Gaps = 32/436 (7%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V ++GC++N+Y+S  +       G +        ++ + NTC + + A ++    + + +
Sbjct: 9   VVTFGCRLNIYESEIIRKNLELSGID--------NVAIFNTCAVTKAAEKQARQAIRKAK 60

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
                  K   DL ++V GC AQ    ++    P V+ V+G +          +    K 
Sbjct: 61  -------KNNPDLKIIVTGCSAQTSP-QMYGNMPEVDKVIGNEEKLLPNYY--QITDAKI 110

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
            V+   SV++    L       +R     AF+ +Q GCD FCTFC++PY RG   S ++ 
Sbjct: 111 TVNDIMSVKETASHLISSFDCKSR-----AFIQVQNGCDHFCTFCIIPYGRGKSRSVAIG 165

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
            + ++ + L+ NG  E+   G +V A  G  L G       +   L+ +  L RLR ++ 
Sbjct: 166 AIAEQVKHLVLNGFKEVVFTGVDVTA-YGSDLPGSPTFAQMIKRVLNLVPELKRLRLSSI 224

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
              ++ D L +     + +MP+ H+ +Q+G D ILK M RRH      +   ++R++RP+
Sbjct: 225 DVAEIDDELFELIAYSERIMPHFHISLQAGDDMILKRMKRRHNRANVIEFCRKLRAIRPE 284

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           ++  +D I GFP ET + F  T  L+ +        F YS R GTP + M  QV +N++ 
Sbjct: 285 VSFGADIIAGFPTETPEMFENTRKLISEAELQYLHVFPYSEREGTPAARMP-QVPKNIRK 343

Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIG 448
           ER   L+++ + Q   F    +GQ +E+L+E +       +  +     V L+ K   IG
Sbjct: 344 ERAAILRQEGQNQLTEFFKKHIGQKVELLVENNN------IAHTENFIPVKLD-KPLEIG 396

Query: 449 DIIKVRITDVKISTLY 464
            I K ++  ++ + + 
Sbjct: 397 QIFKAKLVAIEENYMK 412


>gi|167467943|ref|ZP_02332647.1| hypothetical protein YpesF_08599 [Yersinia pestis FV-1]
          Length = 321

 Score =  335 bits (860), Expect = 8e-90,   Method: Composition-based stats.
 Identities = 134/287 (46%), Positives = 184/287 (64%), Gaps = 1/287 (0%)

Query: 183 QEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG 242
            EGC+K+CTFCVVPYTRG E+SR    ++ E  +L   GV E+ LLGQNVNA+RG   DG
Sbjct: 1   MEGCNKYCTFCVVPYTRGEEVSRPSDDILFEIAQLAAQGVREVNLLGQNVNAYRGATYDG 60

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
           + C+F++LL  ++ I G+ R+R+TTSHP + +D +I  + D   L+ +LHLPVQSGSDRI
Sbjct: 61  DICSFAELLRLVAAIDGIDRVRFTTSHPIEFTDDIIDVYRDTPELVSFLHLPVQSGSDRI 120

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           L  M R HTA EY+ II ++R  RPDI ISSDFIVGFPGET  DF  TM LV  I +  +
Sbjct: 121 LTMMKRAHTALEYKAIIRKLRQARPDIQISSDFIVGFPGETQQDFEQTMKLVADIHFDTS 180

Query: 363 FSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422
           +SF YSPR GTP +++   V E  K +RL  LQ+++ +Q +  +   VG +  VL+E   
Sbjct: 181 YSFIYSPRPGTPAADLPNNVSEEEKKQRLHILQQRISQQAMEISRKMVGTVQRVLVEGTS 240

Query: 423 KEK-GKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           ++   +L GR+   + V        IG  + V I +V  S+L G L+
Sbjct: 241 RKNVMELAGRTENNRVVNFEGSPDMIGKFVDVEIVNVYASSLRGILL 287


>gi|194755317|ref|XP_001959938.1| GF11786 [Drosophila ananassae]
 gi|190621236|gb|EDV36760.1| GF11786 [Drosophila ananassae]
          Length = 557

 Score =  335 bits (860), Expect = 9e-90,   Method: Composition-based stats.
 Identities = 130/466 (27%), Positives = 215/466 (46%), Gaps = 27/466 (5%)

Query: 10  VAHMVSQIVDQCIVP--QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVL 67
           V       + + ++P  Q+ FVK++GC  N  DS  M     + GY+     +DADL +L
Sbjct: 56  VTPKPKPTIHESVIPGTQKVFVKTWGCAHNNSDSEYMAGQLAAYGYKLSGK-EDADLWLL 114

Query: 68  NTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVV 127
           N+C ++  + +   + +        S +K G    VVVAGCV Q   +           V
Sbjct: 115 NSCTVKNPSEDTFRNEI-------ESGMKNGKH--VVVAGCVPQGAPKSDYLNG---LSV 162

Query: 128 VGPQTYYRLPELLERARFGK--RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEG 185
           +G Q   R+ E++E    G   R++     V  +    + +     RK  +   ++I  G
Sbjct: 163 IGVQQIDRVVEVVEETLKGHSVRLLQNKKKVHGRRVAGAPLSLPKVRKNPLIEIISINSG 222

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C   CT+C   + RG   S    +VV+ AR+    G CEI L  ++  A  G+ +     
Sbjct: 223 CLNQCTYCKTKHARGDLASYPPEEVVERARQSFAEGCCEIWLTSEDTGA-YGRDI---GS 278

Query: 246 TFSDLLYSLSE-IKGLVRLRYTTSHPRDMSDCLIKAHG--DLDVLMPYLHLPVQSGSDRI 302
           +  +LL+ L E I     LR   ++P  + + L +         +  +LH+PVQSGSD +
Sbjct: 279 SLPELLWKLVEVIPEHCMLRVGMTNPPYILEHLEEVAKVLQHPRVYAFLHVPVQSGSDSV 338

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           L  M R +   ++  ++D +R   P + I++D I GFP ET+ DF  TM L  K  +   
Sbjct: 339 LGEMKREYCRKDFEHVVDFLRERVPGVTIATDIICGFPTETEADFEETMTLCAKYRFPSL 398

Query: 363 FSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422
           F  ++ PR GTP + M E++  N+  +R   L               VGQI  VL+ +  
Sbjct: 399 FINQFFPRPGTPAAKM-ERIPANLVKKRTKRLTDLFY--TYEPYSGRVGQIYTVLVTEIS 455

Query: 423 KEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            +K   VG +   + V+L  + + +G  + VRIT     ++ GE++
Sbjct: 456 HDKLHYVGHNKSYEQVLLPMRENLLGTRVHVRITSASKFSMVGEIL 501


>gi|15605955|ref|NP_213332.1| hypothetical protein aq_474 [Aquifex aeolicus VF5]
 gi|6226379|sp|O66772|Y474_AQUAE RecName: Full=Putative methylthiotransferase aq_474
 gi|2983129|gb|AAC06733.1| hypothetical protein aq_474 [Aquifex aeolicus VF5]
          Length = 410

 Score =  335 bits (859), Expect = 9e-90,   Method: Composition-based stats.
 Identities = 124/432 (28%), Positives = 219/432 (50%), Gaps = 25/432 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +   ++ GC+MN +D+  +++ F  +GYE V+  D AD+ V+NTC +           + 
Sbjct: 2   KVAFETLGCRMNQFDTDLLKNKFIQKGYEVVSFEDMADVYVINTCTVTVGGDRSSRQAIY 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA-- 143
           + +       +     +VV  GC AQ   +E+  +   V++VVG      L ++LE    
Sbjct: 62  QAK-------RRNPKAIVVATGCYAQVNPQELA-KLKEVDLVVGNTHKSELLKILEEYLE 113

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           R  K+VV  +   E +      V        GV  FL +QEGC+KFCTFCV+PY RG   
Sbjct: 114 RREKKVVVGEIFREKEVRNFDTVLYF----EGVRPFLKVQEGCNKFCTFCVIPYARGKVR 169

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           S  L ++V + + L   G  E+ L G  + +  G     +      LL  L +I+G+  +
Sbjct: 170 SVDLEKIVHQVKLLAQKGFKEVVLTGTQL-SQYGWD---KGYNLYTLLTELIKIEGIELI 225

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R ++ H ++M   L+K     + + P+ HL +QSGS+RIL+ M+R +T  EY ++++ I 
Sbjct: 226 RLSSMHIKEMDKELLKLIVSEEKIAPHFHLSLQSGSNRILELMDRGYTREEYEEVVNFIV 285

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
             RP  +I +D IVGFP E+++DF+ T + + +I  +    F YS R  T  S +  ++ 
Sbjct: 286 ENRPISSIGTDVIVGFPTESEEDFQETYEFLKRIPISYMHIFPYSDRPFTKASKLKPKLP 345

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
           E +K ER+  L++  ++++  F +   G+ +  L+     E+ +L+  +     +     
Sbjct: 346 ERIKKERVRILKELDQKKRQEFYEKNKGKELRALV----IEENRLL--TENYIDIKREGY 399

Query: 444 NHNIGDIIKVRI 455
              +G +++V I
Sbjct: 400 KE-VGKLVRVLI 410


>gi|120610328|ref|YP_970006.1| ribosomal protein S12 methylthiotransferase [Acidovorax citrulli
           AAC00-1]
 gi|238065265|sp|A1TMP4|RIMO_ACIAC RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|120588792|gb|ABM32232.1| SSU ribosomal protein S12P methylthiotransferase [Acidovorax
           citrulli AAC00-1]
          Length = 463

 Score =  335 bits (859), Expect = 9e-90,   Method: Composition-based stats.
 Identities = 119/484 (24%), Positives = 200/484 (41%), Gaps = 54/484 (11%)

Query: 18  VDQCIVP---QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIRE 74
           +++ I P    R  + S GC   + DS  +     ++GY+   + + ADL+++NTC   +
Sbjct: 1   MNETIAPARLPRIGMVSLGCPKALTDSELILTQLSAEGYQTSKTFEGADLVIVNTCGFID 60

Query: 75  KAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEE----ILRRSPIVNVVVGP 130
            A ++    +G                 V+V GC+    GE     +    P V  V GP
Sbjct: 61  DAVKESLDTIGEALAENGK---------VIVTGCLGARAGEGGGNLVREMHPSVLAVTGP 111

Query: 131 QTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGY---NRKRGVTAFLTIQEGCD 187
                + + + +               D F  L     G           A+L I EGC+
Sbjct: 112 HATQEVMDAVHQNLP---------KPHDPFIDLVPGGFGVAGVKLTPRHYAYLKISEGCN 162

Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLD 241
             CTFC++P  RG  +SR +  V+ EA+ L + GV E+ ++ Q+ +A+      R    D
Sbjct: 163 HRCTFCIIPSMRGDLVSRPVGDVLSEAKALFEGGVKELLVISQDTSAYGVDVKYRTGFWD 222

Query: 242 GE--KCTFSDLLYSLSEI----KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPV 295
           G+  K    +L+ +L EI       VRL Y   +P         A G    ++PYL +P 
Sbjct: 223 GKPVKTRMLELVQTLGEIAEPYGAWVRLHYVYPYPSVDEVIPFMATG---KILPYLDVPF 279

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
           Q     +L+ M R  +     + I R R   P++ I S FI GFPGET+++F+  +D + 
Sbjct: 280 QHSHPDVLRRMKRPASGERNLERIQRWREACPELVIRSTFIAGFPGETEEEFQHLLDFLR 339

Query: 356 KIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIE 415
           +    +A  F YS   G   + +   +   V+ ER         E  +      VG  ++
Sbjct: 340 EAQIDRAGCFAYSDVDGAVANELPGMLPMEVREERRARFMAVAEEVSIERLRRRVGATMQ 399

Query: 416 VLIE-----KHGKEKGKLVGRSPWLQSVVL------NSKNHNIGDIIKVRITDVKISTLY 464
           VL++          +G+    +P +  VV        SK   +G+  + +I  V+   L 
Sbjct: 400 VLVDHAPALGRKGGRGRSYADAPEIDGVVHLLPPEKISKQLKVGEFTRAQIVGVQGHDLV 459

Query: 465 GELV 468
              +
Sbjct: 460 ARPI 463


>gi|85707593|ref|ZP_01038659.1| hypothetical protein NAP1_00120 [Erythrobacter sp. NAP1]
 gi|85689127|gb|EAQ29130.1| hypothetical protein NAP1_00120 [Erythrobacter sp. NAP1]
          Length = 456

 Score =  335 bits (859), Expect = 9e-90,   Method: Composition-based stats.
 Identities = 118/472 (25%), Positives = 198/472 (41%), Gaps = 52/472 (11%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +R  + S GC   + DS R+     + GY        AD++++NTC   + A E+  + +
Sbjct: 5   KRVGMVSLGCPKALVDSERILTRLRADGYAMSADYAGADVVLVNTCGFLDSAKEESLAAI 64

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           G              +  V+V GC+   E E I    P V  V G   Y ++ E +    
Sbjct: 65  GEA---------IAENGRVIVTGCMGD-EAEAIRAAHPQVLAVTGAHQYEQVVEAVHEHA 114

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
              +    D           I            ++L I EGC+  C FC++P  RG   S
Sbjct: 115 PPSQGPYIDL----------IPQPDVKLTPRHYSYLKISEGCNHSCAFCIIPQLRGKLAS 164

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAW------------RGKGLDGEKCTFSDLLY 252
           R +  V+ EA KL+  G  E+ ++ Q+ +A+             G+     +   +DL  
Sbjct: 165 RRIDAVLREAEKLVAAGTKELLVISQDTSAYGVDTRHEARPWPMGQDTREVRAHMTDLAR 224

Query: 253 SLSEIK------GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306
            L +++         RL Y   +P       + A G   +L PYL +P Q  S  +LK+M
Sbjct: 225 ELGQLRTAEGKAPWTRLHYVYPYPHVDKVIPLMAEG---LLTPYLDIPFQHASPNVLKAM 281

Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
            R     +  + +   R + P+IA+ S F+VGFPGET+DDF+  +D +++    +  +F+
Sbjct: 282 KRPANEAKVLERLKGWREICPEIAVRSSFVVGFPGETEDDFKYLIDWLEEAQLDRVGAFR 341

Query: 367 YSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK- 425
           + P  G   +++   V E VK ER   L +       +   A VG+ + V+I+  G+   
Sbjct: 342 FEPVEGAAANDLPNPVPEEVKEERYARLMEVTERISAAKLAAKVGKTLPVIIDDVGEPDE 401

Query: 426 -------GKLVGRSPWLQSVVL---NSKNHNIGDIIKVRITDVKISTLYGEL 467
                  G+    +P +   V      +    G I+ V + D     LYG +
Sbjct: 402 DGDIGATGRSQADAPEIDGAVYLRNVPETLEPGAIVDVEVEDADAHDLYGVI 453


>gi|46447397|ref|YP_008762.1| putative 2-methylthioadenine synthetase [Candidatus Protochlamydia
           amoebophila UWE25]
 gi|46401038|emb|CAF24487.1| putative 2-methylthioadenine synthetase [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 434

 Score =  335 bits (859), Expect = 9e-90,   Method: Composition-based stats.
 Identities = 119/444 (26%), Positives = 217/444 (48%), Gaps = 28/444 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +F + + GC+ N Y+S   ++     GY+     + AD+ ++NTC + E A       + 
Sbjct: 7   KFKIITLGCRTNQYESQAYQNQLLRMGYQEAKEGEKADICIVNTCTVTESADSSSRHAIR 66

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           ++        +E     ++VAGC A+ + E I ++   V  V+  +      +LL R   
Sbjct: 67  QLA-------RENQGTQLLVAGCFAERQPEVI-QKIDGVTHVIPNREK---EQLLARLFP 115

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            + + +   +  D                   AF+ +Q+GC+ FCT+C++PY RG   SR
Sbjct: 116 KENLPEFSITQFD---------------SHTRAFIKVQDGCNSFCTYCIIPYVRGRSRSR 160

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE-KCTFSDLLYSLSEIKGLVRLR 264
           S+ +V++EA+ LI NG  EI L G N+  + GK   GE     S+L+  + ++ GL RLR
Sbjct: 161 SVEEVLEEAKALISNGYKEIVLTGINIGDFDGKVAKGETPVRLSELVRMVDQLPGLERLR 220

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
            ++  P ++ D L  A  +       +H+ +QSGS+ ILK MNR++T   +   ID++++
Sbjct: 221 LSSIDPDEVDDELSDAILNGKHTCHSMHIVLQSGSNVILKRMNRKYTRQIFLDTIDKLKA 280

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
              D   ++D IVGFPGETD DF+ T++++  + +A+   F YS R  T  + M  +V  
Sbjct: 281 AHSDFTFTTDIIVGFPGETDLDFQDTIEVMKHVKFAKVHMFPYSDRPRTRSNLMPNKVSP 340

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVLNSK 443
            +   R   + +   +      +  + + +++L E   +   G++ G +    SV +  +
Sbjct: 341 EMIRMRKQEILRVAEQTAYKLREGYLNRRMKILTESIDEARPGEIHGHTENFLSVWIQDE 400

Query: 444 NHNIGDIIKVRITDVKISTLYGEL 467
                 I++V +     + L G+ 
Sbjct: 401 GIQSNKIVEVELVANTPAGLIGKP 424


>gi|300192927|ref|NP_001177888.1| CDKAL1-like protein [Nasonia vitripennis]
          Length = 541

 Score =  335 bits (859), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 119/452 (26%), Positives = 208/452 (46%), Gaps = 25/452 (5%)

Query: 21  CIVP--QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAE 78
            ++P  Q  ++K++GC  N  DS  M       GY        ADL +LN+C ++  A +
Sbjct: 55  SVIPGTQTIYIKTWGCTHNSSDSEYMAGQLSMYGYNLTEDKSIADLWILNSCTVKNPAED 114

Query: 79  KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPE 138
              + +   R L            +VV+GCV Q   +    +      ++G Q   R+ E
Sbjct: 115 HFKNEINLARKL---------GKHIVVSGCVPQGAPKSNFIQG---LSIIGVQQIDRVVE 162

Query: 139 LLERARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197
           ++E    G  V   +   E  K    + +     R+  +   + I  GC   CT+C   +
Sbjct: 163 VVEETLKGNTVKFLNKKKEAGKKIGGAPLSLPKVRRNPLIEIIAINTGCLNQCTYCKTKH 222

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE- 256
            RG   S    +++D A +   +G+ E+ L  ++  A  GK +D       +LL+ L + 
Sbjct: 223 ARGELGSYRPEEIIDRAIQAFKDGIKELWLTSEDTGA-YGKDID---TNLPELLWKLIDV 278

Query: 257 IKGLVRLRYTTSHPRDMSDCL--IKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
           I    R+R   ++P  + + L  I        +  +LH+PVQSGSDR+L  M R ++  +
Sbjct: 279 IPDKCRMRIGMTNPPYILEHLEEIGKILKHPKVYSFLHIPVQSGSDRVLFDMKREYSRSD 338

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
           +  I+D ++   P+I I++D I GFP ET +DF  TM L  K  ++  F  ++ PR GTP
Sbjct: 339 FENIVDFLKEKIPNINIATDVICGFPTETSEDFEETMSLCQKYKFSTLFINQFFPRQGTP 398

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPW 434
            + M+ QV       R   + +    Q     +  +G+I EVL+ +   +    V  + +
Sbjct: 399 AAKMI-QVPSKEIKNRTKLISEFF--QSYEPYNTKIGEIQEVLVTEIAHDNKHYVAHNSY 455

Query: 435 LQSVVLNSKNHNIGDIIKVRITDVKISTLYGE 466
            + V++  K   +G+++KV+I      ++ GE
Sbjct: 456 YEQVLIPMKKEYMGEMLKVKIISASKHSMKGE 487


>gi|260431873|ref|ZP_05785844.1| conserved hypothetical protein [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260415701|gb|EEX08960.1| conserved hypothetical protein [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 418

 Score =  335 bits (859), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 122/445 (27%), Positives = 200/445 (44%), Gaps = 32/445 (7%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + P +F   + GC++N Y++  M+++    G          D +++NTC +  +A  K  
Sbjct: 1   MNPPKF--TTLGCRLNAYETEAMKELSQQAGLT--------DAVIVNTCAVTAEAVRKAR 50

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR---LPE 138
             + ++R       +E  +  ++V GC AQ E +        V+ V+G     R      
Sbjct: 51  QEIRKLR-------RENPNARLIVTGCAAQTEPQTFAD-MDEVDAVIGNTEKMRPETWKG 102

Query: 139 LLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
           +          V  D  +        ++DG   R R   A++ +Q GCD  CTFC++PY 
Sbjct: 103 MAADFIGETEAVQVDDIMSVTETAGHLIDGFGTRSR---AYVQVQNGCDHRCTFCIIPYG 159

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258
           RG   S     VVD+ ++L+D G  E+ L G ++ +W G  L         ++  L  + 
Sbjct: 160 RGNSRSVPAGVVVDQIKRLVDRGYNEVVLTGVDLTSW-GADLPASPKLGDLVMRILKLVP 218

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
            L RLR ++    ++ + L++A      LMP+LHL +Q G D ILK M RRH   +  + 
Sbjct: 219 DLPRLRISSIDSIEVDENLMQAIATEPRLMPHLHLSLQHGDDLILKRMKRRHLRDDAIRF 278

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
            +  R +RP+I   +D I GFP ET+  F  ++ LV          F YS R GTP + +
Sbjct: 279 TEEARKLRPEITFGADIIAGFPTETEAHFENSLKLVTDCDLTWLHVFPYSKREGTPAARI 338

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSV 438
            +QV+  V  ER   L++    Q      A +G+   +L+E         +GR+     V
Sbjct: 339 PQQVNGKVIKERAARLREAGDAQVARHLAAQLGKTHHILMENP------HMGRTEQFTEV 392

Query: 439 VLNSKNHNIGDIIKVRITDVKISTL 463
              +     G I+  RIT +    L
Sbjct: 393 TFATPQPE-GQIVTARITGLDGQRL 416


>gi|294678658|ref|YP_003579273.1| MiaB family RNA modification enzyme [Rhodobacter capsulatus SB
           1003]
 gi|294477478|gb|ADE86866.1| RNA modification enzyme, MiaB family [Rhodobacter capsulatus SB
           1003]
          Length = 464

 Score =  335 bits (859), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 118/475 (24%), Positives = 199/475 (41%), Gaps = 44/475 (9%)

Query: 13  MVSQIVDQCIVP--QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC 70
               +V     P      + S GC   + DS R+     ++GY    S   AD +++NTC
Sbjct: 13  APKALVTDTPRPGQPTIGMVSLGCPKALVDSERILTRLRAEGYAISPSYQGADAVIVNTC 72

Query: 71  HIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGP 130
              + A  +    +G   +             V+V GC+  AE E I    P V  V GP
Sbjct: 73  GFLDSAKAESLEAIGEALSENGK---------VIVTGCLG-AEPEFITGVHPKVLAVTGP 122

Query: 131 QTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190
           + Y ++ + +  A              D F  L    G     R   ++L I EGC+  C
Sbjct: 123 EQYEQVLDAVHGA---------VPPKPDPFVDLLPATGIKLTPRHF-SYLKISEGCNHAC 172

Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE------- 243
            FC++P  RG  +SR    V+ EA KL++ GV E+ ++ Q+ +A  G     E       
Sbjct: 173 KFCIIPDMRGKLVSRPAHAVLREAEKLLEAGVRELLVISQDTSA-YGLDRRHEATAWKGA 231

Query: 244 --KCTFSDLLYSLSEI----KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQS 297
             +   +DL   L ++       VRL Y   +P      LI    D  +++PYL +P Q 
Sbjct: 232 EVRAHITDLTRELGKLAQPSGAWVRLHYVYPYPHV--RELIPLMAD-GLVLPYLDIPFQH 288

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
                LK M R   + +    I   R+  P+I + S FIVG+PGET+ +F+  +D + + 
Sbjct: 289 AHPETLKRMARPAASAKTLDEIAAWRADCPEIVLRSTFIVGYPGETEAEFQYLLDWMAEA 348

Query: 358 GYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVL 417
              +   F+Y    G   +++ + V   VK ER     +  +    +   A VG + +VL
Sbjct: 349 QLDRVGCFQYENVKGARSNDLPDHVPAEVKQERWERFMEAAQAISEAKLAAKVGTVQQVL 408

Query: 418 IEKHGKEKG--KLVGRSPWLQSVVLNS---KNHNIGDIIKVRITDVKISTLYGEL 467
           ++    E    +    +P +   +      ++ + GD++ V + +     L+G +
Sbjct: 409 VDAVDDEGATCRTRADAPEIDGNLFIDEGFEDLSPGDMVTVEVEEASDYDLWGRV 463


>gi|239617933|ref|YP_002941255.1| MiaB-like tRNA modifying enzyme YliG [Kosmotoga olearia TBF 19.5.1]
 gi|239506764|gb|ACR80251.1| MiaB-like tRNA modifying enzyme YliG [Kosmotoga olearia TBF 19.5.1]
          Length = 433

 Score =  335 bits (859), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 123/441 (27%), Positives = 217/441 (49%), Gaps = 23/441 (5%)

Query: 32  YGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLK 91
            GC  N+ D    + +   +G+E  N ++ A ++V++TC   ++A ++    + R+ + K
Sbjct: 8   LGCPKNIADMDNFKGIMLKRGHEFANGVESAGIVVIDTCGFIDEAKKESIEEILRLCSFK 67

Query: 92  NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVD 151
                   DL V+  GC+ Q    E+    P ++ ++G  +  +L +L+E   F      
Sbjct: 68  EE----KPDLKVIAVGCLVQRYYRELKEGIPEIDGLIGVTSPEKLADLIEAGNF------ 117

Query: 152 TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVV 211
             + +E      ++ D  +       +++ I +GCD+ C FC +P  +G   SR + ++ 
Sbjct: 118 --FFIEKP---STVYDFKFRTYGKPYSYVKIGDGCDRGCAFCSIPSFKGSSRSRPIEEIE 172

Query: 212 DEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPR 271
            E   L+  G+ EI L+ Q+     G  + G K    DLL SL+EI G   +R    HP 
Sbjct: 173 KEVCFLVSEGIREIVLVSQDTT-QYGVDIYG-KQALPDLLKSLNEIPGDFWIRVMYLHPD 230

Query: 272 DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAI 331
            +++ +I +   L+ ++ Y  +PVQSGSD ILK M R   A E + + ++IR+   D+ +
Sbjct: 231 HLTEGIINSILKLEKVVNYFDVPVQSGSDYILKRMGRTKKAGELKAMFEKIRAKESDVTL 290

Query: 332 SSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERL 391
            +  +VGFPGET   F  T++ V+ + + +   F YSP  GTP  +    +DEN+  + L
Sbjct: 291 RTTIMVGFPGETRRTFEETLEFVNDVKFDKLGGFVYSPEEGTPAYSFKMTIDENMARQYL 350

Query: 392 LCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVLNSKNHNI 447
             L     E     N    G++++VLIE++ +E   ++GRS    P +   +   +    
Sbjct: 351 DELLDLQDEISYELNQRHFGKVLKVLIEENTEE--VMIGRSPHFAPEIDGSIFLKRADEA 408

Query: 448 GDIIKVRITDVKISTLYGELV 468
           G+ +  RIT V    L G +V
Sbjct: 409 GEFVMCRITGVYEHDLEGVIV 429


>gi|241763703|ref|ZP_04761752.1| MiaB-like tRNA modifying enzyme YliG [Acidovorax delafieldii 2AN]
 gi|241367092|gb|EER61466.1| MiaB-like tRNA modifying enzyme YliG [Acidovorax delafieldii 2AN]
          Length = 463

 Score =  335 bits (859), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 128/487 (26%), Positives = 207/487 (42%), Gaps = 56/487 (11%)

Query: 14  VSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIR 73
           +S+ +     P+  FV S GC   + DS  +     ++GYE   + + ADL+++NTC   
Sbjct: 1   MSEALAPTKTPKVGFV-SLGCPKALTDSELILTQLSAEGYETSKTFEGADLVIVNTCGFI 59

Query: 74  EKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGE----EILRRSPIVNVVVG 129
           + A ++    +G                 V+V GC+    GE     +    P V  V G
Sbjct: 60  DDAVKESLDTIGEALAENGK---------VIVTGCLGARAGEGGGNMVREMHPSVLAVTG 110

Query: 130 PQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGY---NRKRGVTAFLTIQEGC 186
           P     + + +                 D F  L     G           A+L I EGC
Sbjct: 111 PHATQEVMDAVHLNLP---------KPHDPFLDLVPGSFGVAGIKLTPKHYAYLKISEGC 161

Query: 187 DKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGL 240
           +  CTFC++P  RG  +SR +  V+ EA+ L + GV E+ ++ Q+ +A+      R    
Sbjct: 162 NHRCTFCIIPSMRGDLVSRPVGDVLSEAKALFEGGVKELLVISQDTSAYGVDVKYRTGFW 221

Query: 241 DGE--KCTFSDLLYSLSEI----KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP 294
           DG+  K    +L+ +L EI       VRL Y   +P       + A G   +++PYL +P
Sbjct: 222 DGKPVKTRTLELVQTLGEIAAPYGAWVRLHYVYPYPSVDEIIPLMAQG---LVLPYLDVP 278

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
            Q     +LK M R  +  +  + I R R   P+I I S FI GFPGET+ +F+  +D +
Sbjct: 279 FQHSHPDVLKRMKRPASGEKNLERIQRWREACPEIVIRSTFIAGFPGETEAEFQHLLDFL 338

Query: 355 DKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQII 414
            +    +A  F YS   G   + +   +   V+ ER         E  ++     VG  +
Sbjct: 339 REAQIDRAGCFAYSDVSGAVANELPGMLPLEVREERRARFMAVAEEVSIAKLQRRVGATM 398

Query: 415 EVLIE---KHGKEKGKLVGRS----PWLQSVVL------NSKNHNIGDIIKVRITDVKIS 461
           +VL++     G++ G  VGR+    P +   V        SK   +G+  K RI  V+  
Sbjct: 399 QVLVDSAPGLGRKGG--VGRTYADAPEIDGTVQLLPPEKISKTMKVGEFTKARIVAVQGH 456

Query: 462 TLYGELV 468
            L  + +
Sbjct: 457 DLVAQPI 463


>gi|329957659|ref|ZP_08298134.1| tRNA methylthiotransferase YqeV [Bacteroides clarus YIT 12056]
 gi|328522536|gb|EGF49645.1| tRNA methylthiotransferase YqeV [Bacteroides clarus YIT 12056]
          Length = 445

 Score =  335 bits (859), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 117/424 (27%), Positives = 197/424 (46%), Gaps = 17/424 (4%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N  ++  +  +    G       + AD+ V+NTC + E A +K    + R+   
Sbjct: 16  TLGCKLNFSETSTIGKILREAGVRTARKGEKADICVVNTCSVTEVADKKCRQAIHRL--- 72

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               +K+     VVV GC AQ + + +  +   V+VV+G +    L + L   +  +   
Sbjct: 73  ----VKQHPGAFVVVTGCYAQLKPDAVA-KIEGVDVVLGAEQKKDLLQYLGDLKKHESGE 127

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
               +++D            +R      FL +Q+GCD +C++C +P+ RG   + S++ +
Sbjct: 128 AYTSALKDIRSFAP----SCSRGDRTRFFLKVQDGCDYYCSYCTIPFARGRSRNGSIASL 183

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270
           V++AR+    G  EI L G N+    G        TF DL+ +L E++G+ R R ++  P
Sbjct: 184 VEQARQAAAEGGKEIVLTGVNI----GDFGKSTGETFFDLVKALDEVEGIERYRISSIEP 239

Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330
             ++D +IK        MP+ H+P+QSGSD +LK M RR+    +   + RI+ V PD  
Sbjct: 240 NLLTDEIIKFVSRSKRFMPHFHIPLQSGSDEVLKLMRRRYDTALFASKVRRIKEVMPDAF 299

Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER 390
           I  D IVG  GET++ F      +  +   Q   F YS R GT    +   V    K  R
Sbjct: 300 IGVDVIVGTRGETEEYFEQAYRFIQGLDVTQLHVFSYSERPGTQALKIDHVVSSEEKHRR 359

Query: 391 LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDI 450
              L +   E+  +F    +GQ + VL+E+  K    + G +P    V +   +     +
Sbjct: 360 SQLLLELSDEKTRAFYARHIGQTMPVLLER-SKPGTPMHGFTPNYIRVEVPHDDALDNQV 418

Query: 451 IKVR 454
           I  R
Sbjct: 419 IPAR 422


>gi|295084759|emb|CBK66282.1| MiaB-like tRNA modifying enzyme [Bacteroides xylanisolvens XB1A]
          Length = 439

 Score =  335 bits (859), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 117/456 (25%), Positives = 212/456 (46%), Gaps = 20/456 (4%)

Query: 17  IVDQCIVPQRFFVK-SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREK 75
           ++D  +   +  V  + GC++N  ++  +  +    G       + AD+ V+NTC + E 
Sbjct: 1   MIDTTVFQNKTAVYYTLGCKLNFSETSTIGKILREAGVRTARKGEKADICVVNTCSVTEM 60

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135
           A +K    + R+       +K+  D  VVV GC AQ +  ++  +   V+VV+G +    
Sbjct: 61  ADKKCRQAIHRL-------VKQHPDAFVVVTGCYAQLKPGDVA-KIDGVDVVLGAEQKGE 112

Query: 136 LPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
           L + L   +  ++      + +D            +R      FL +Q+GCD FC++C +
Sbjct: 113 LLQYLGDLQKHEKGEAITTTTKDIRSFSP----SCSRGDRTRFFLKVQDGCDYFCSYCTI 168

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
           P+ RG   + +++ +V++AR+    G  EI L G N+    G        +F DL+ +L 
Sbjct: 169 PFARGRSRNGTIASMVEQARQAAAEGGKEIVLTGVNI----GDFGKTTGESFFDLVKALD 224

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
           +++G+ R R ++  P  ++D +I+        MP+ H+P+QSG D +L+ M RR+    +
Sbjct: 225 QVEGIERYRISSIEPNLLTDEIIEFVSHSRSFMPHFHIPLQSGCDEVLQLMRRRYDTALF 284

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
              + +I+ V PD  I  D IVG  GET + F      +D +   Q   F YS R GT  
Sbjct: 285 ASKVKKIKEVMPDAFIGVDVIVGTRGETPEYFEQAYQFIDGLDVTQLHVFSYSERPGTQA 344

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWL 435
             +   V    K +R   L     ++  +F    +GQ + VL+EK  K    + G +   
Sbjct: 345 LKIEYVVSPEEKHQRSQRLLALSDQKTQAFYACHIGQTMPVLMEK-SKTGAPMHGFTENY 403

Query: 436 QSVVLNSKNHNIGDIIKVRITDVKI--STLYGELVV 469
             V + S +     ++ VR+ +     + L G +++
Sbjct: 404 IRVEVESDDSLDNQVVNVRLGEFNEEMTALKGTILI 439


>gi|187251522|ref|YP_001876004.1| MiaB family RNA modification enzyme [Elusimicrobium minutum Pei191]
 gi|186971682|gb|ACC98667.1| RNA modification enzyme, MiaB family [Elusimicrobium minutum
           Pei191]
          Length = 410

 Score =  335 bits (859), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 139/442 (31%), Positives = 224/442 (50%), Gaps = 33/442 (7%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +R F++++GCQMN+ DS  M      +G E    ++ AD++++NTC IRE A  K  SFL
Sbjct: 2   KRVFIQTFGCQMNIADSAEMLAHLSRRGVEETKDIESADIVLVNTCTIREHAEHKAVSFL 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR+   K          +++ AGC A+  GE + +  P +++V G +      ++L+   
Sbjct: 62  GRLAKWKAKDC----SRVIIFAGCAAERLGEALKKDYPFLDIVAGAKGIDNFSKMLD--E 115

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G   V+               +   + K GV  ++TI  GC+  C++C+VP  RG    
Sbjct: 116 SGLFAVNAQ-------------NYTQSVKSGVLDYVTIMRGCNFACSYCIVPSVRGGVKC 162

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
            S   +++   +L    V EI LLGQ VNA++ +  D     F+DLL   + +KG+ R+R
Sbjct: 163 LSPEVILENCAELAKKNVKEIVLLGQTVNAYKYEDTD-----FADLLLKAASVKGVERVR 217

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           + + HP  ++  LI      D +  ++HLPVQSGSD+ILK M R + +    + I R++ 
Sbjct: 218 FMSPHPAFITPKLIDTIAKNDKIAKHIHLPVQSGSDKILKEMKRGYDSKTVIEKISRLKE 277

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
               + +S+D IVG+P ET++DF  T++LVDK  ++ A+ FK+SPR  TP  ++     +
Sbjct: 278 N--GVLVSTDIIVGYPTETEEDFERTLELVDKCAFSFAYCFKFSPRRNTPAYSLKPLASD 335

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
               +RL  L  K+R           G    VL+E   K      GR+     V    K 
Sbjct: 336 KEVEKRLDILLNKVRHFSAKAYKDAAGTEQMVLMETVYK------GRTSGNLWVKTP-KQ 388

Query: 445 HNIGDIIKVRITDVKISTLYGE 466
           H +G +++VRI +     L  E
Sbjct: 389 HPVGSMVRVRIKESDGKILSAE 410


>gi|242399008|ref|YP_002994432.1| Probable 2-methylthioadenine synthetase [Thermococcus sibiricus MM
           739]
 gi|242265401|gb|ACS90083.1| Probable 2-methylthioadenine synthetase [Thermococcus sibiricus MM
           739]
          Length = 424

 Score =  334 bits (858), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 121/446 (27%), Positives = 218/446 (48%), Gaps = 27/446 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R  +++YGC  N  D+  ME +    GYE V  +D AD +++NTC +++   + +   + 
Sbjct: 2   RVHIETYGCTRNKADAEMMEALLLRAGYEVV-DLDSADYVIMNTCAVKDPTEKHMARRIK 60

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            + +             V+V GC+       I      V+ ++G ++  R+   +E A  
Sbjct: 61  ELLD---------SGKRVIVTGCLPHVNPSAI---DERVSGILGVKSIDRIIGAIELAER 108

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G+++++ +   E   ++L I       K GV   + I EGC   CT+C   + RG+  S 
Sbjct: 109 GEKLINVEGWRERSIDKLEIPRVW---KGGVVFVVPISEGCLNACTYCATRFARGVLKSY 165

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
               +V   ++ +  G  EI L  ++     G  +       + LL  ++ I+G  R+R 
Sbjct: 166 KPGLIVKWVKEAVAKGYKEIQLSSEDTG-CYGFDI---GTNLARLLDEITSIEGEFRIRV 221

Query: 266 TTSHPRD---MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
              +P +   + D LI+A+ D   +  +LHLPVQSG + ILK M R +T  E+ +I+   
Sbjct: 222 GMMNPNNAVKVLDELIEAYKDN-KIYKFLHLPVQSGDNEILKRMGRPYTVEEFEEIVREF 280

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R    D+ +++D IVGFPGE+++ F+ T++L+ ++   +    ++SPR GT  + M +Q+
Sbjct: 281 RKHIKDLNLNTDIIVGFPGESEEAFQNTVELIKRVRPDKINVSRFSPRPGTVAARMKDQI 340

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
                 ER   L +         N   +G+ +EVL      +KG + GR+   + ++L  
Sbjct: 341 VGWRVKERSRYLHRLRLSISYEINRRYLGREMEVL-THGEGKKGGIEGRTMNYKDIILP- 398

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
               +G+ +KV++T    + L GELV
Sbjct: 399 -EAPVGEFVKVKVTKTTSTYLLGELV 423


>gi|195456808|ref|XP_002075296.1| GK17257 [Drosophila willistoni]
 gi|194171381|gb|EDW86282.1| GK17257 [Drosophila willistoni]
          Length = 570

 Score =  334 bits (858), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 125/467 (26%), Positives = 222/467 (47%), Gaps = 25/467 (5%)

Query: 8   IGVAHMVSQIVDQCIVP--QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLI 65
           +  A  +   + + ++P  Q+ ++K++GC  N  DS  M     S GY+  +  D+ADL 
Sbjct: 56  VDDAKTLRAPIHESVIPGTQKVYIKTWGCAHNNSDSEYMAGQLASYGYQLCSGKDEADLW 115

Query: 66  VLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVN 125
           +LN+C ++  + +   + +        S ++ G    VVVAGCV Q   +    R     
Sbjct: 116 LLNSCTVKNPSEDTFRNEI-------ESGMQNGKH--VVVAGCVPQGGPKSEYLRG---L 163

Query: 126 VVVGPQTYYRLPELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQE 184
            V+G Q   R+ E++E    G  V +  +  V  +    + +     RK  +   ++I  
Sbjct: 164 SVIGVQQIDRVVEVVEETLKGHSVRLLQNKKVNGRRVAGASLALPKVRKNPLVEIISINT 223

Query: 185 GCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK 244
           GC   CT+C   + RG   S    ++V+ AR+    G CEI L  ++  A  G+ +    
Sbjct: 224 GCLNQCTYCKTKHARGDLASYPPEEIVERARQSFAEGCCEIWLTSEDTGA-YGRDI---G 279

Query: 245 CTFSDLLYSLSE-IKGLVRLRYTTSHPRDMSDCLIKAHG--DLDVLMPYLHLPVQSGSDR 301
            +  +LL+ L E I     LR   ++P  + + L +         +  +LH+PVQSGSD 
Sbjct: 280 SSLPELLWQLVEVIPEHCMLRVGMTNPPYILEHLEEVAKVLQHPRVYSFLHVPVQSGSDS 339

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
           +L  M R +   ++  ++D +R+  P + I++D I GFP ET+ DF  TM L +K  +  
Sbjct: 340 VLGEMKREYCRKDFEHVVDFLRARVPGLTIATDIICGFPTETEADFEETMTLCEKYRFPS 399

Query: 362 AFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKH 421
            F  ++ PR GTP + M E++  N+  +R   L               VG++  VL+ + 
Sbjct: 400 LFINQFFPRPGTPAAKM-ERIPANLVKKRTKRLTDLFY--TYEPYAGRVGEVYAVLVTEI 456

Query: 422 GKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
             +K   VG +   + ++L  + + +G  + VRIT V   ++ G+++
Sbjct: 457 SHDKLHYVGHNKSYEQILLPMRKNLLGTRVHVRITSVSKFSMMGDIL 503


>gi|189347087|ref|YP_001943616.1| MiaB-like tRNA modifying enzyme YliG [Chlorobium limicola DSM 245]
 gi|238065321|sp|B3EDL2|RIMO_CHLL2 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|189341234|gb|ACD90637.1| MiaB-like tRNA modifying enzyme YliG [Chlorobium limicola DSM 245]
          Length = 429

 Score =  334 bits (858), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 120/450 (26%), Positives = 206/450 (45%), Gaps = 35/450 (7%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
            F+ S GC  N  DS R+     + G       DDAD+I++NTC   + A E+  +    
Sbjct: 4   IFLLSLGCSKNTVDSERLMAQAAASGMIFTEFADDADIILINTCGFIQDAKEESIAETLA 63

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
               K           V V GC+ +   +E+    P ++   G +     P++L      
Sbjct: 64  AIRKKQDEK----VRKVYVMGCLPELYRKELADEMPEIDGFFGTREL---PDVL------ 110

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
            R +  +Y  E    R+ +    Y       AFL I EGC++ C+FC +P  RG  +S+ 
Sbjct: 111 -RAIGAEYREELLDRRILLTPPHY-------AFLKIAEGCNRQCSFCSIPKIRGRYVSQP 162

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
             Q++ EA  L  +GV E+ L+ Q++ +  G  LDG     +DL+  LS+++   R+R  
Sbjct: 163 PEQLLREAALLRQSGVRELNLIAQDI-SVYGCDLDGS-SLLNDLVLRLSDME-FERIRLL 219

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
            ++P +    +I    + + +  YL +P+Q  SDRIL+SMNR   +    ++I+ IR   
Sbjct: 220 YAYPLNFPMEVIDTMRERENVCNYLDMPLQHISDRILRSMNRGIDSTGTVRLIESIRQRN 279

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           PDI + +  I G+PGET ++F   +  V +  + +   F YS    +P   + + V    
Sbjct: 280 PDIRLRTTMIAGYPGETGEEFEELLQFVAETRFDRLGCFPYSHEEHSPAYRLEDDVIPEK 339

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK--- 443
           K +R+  L +         N    G  I VL+++   E+  + GR+    +  ++++   
Sbjct: 340 KQDRVAELMELQETISQEKNREFEGNEIVVLVDQV--EENMVFGRT-EYDAPEVDNECIL 396

Query: 444 -----NHNIGDIIKVRITDVKISTLYGELV 468
                +   G   + RITD     L GE++
Sbjct: 397 ETGNFDVRPGMFCRARITDSTPYDLEGEVI 426


>gi|288817621|ref|YP_003431968.1| putative 2-methylthioadenine synthetase [Hydrogenobacter
           thermophilus TK-6]
 gi|288787020|dbj|BAI68767.1| putative 2-methylthioadenine synthetase [Hydrogenobacter
           thermophilus TK-6]
 gi|308751219|gb|ADO44702.1| MiaB-like tRNA modifying enzyme YliG [Hydrogenobacter thermophilus
           TK-6]
          Length = 419

 Score =  334 bits (858), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 117/451 (25%), Positives = 214/451 (47%), Gaps = 41/451 (9%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +  V S GC  N+ D+  +     + G   V+    AD+IV+NTC   E A  +    + 
Sbjct: 2   KVGVISLGCAKNLVDTEVLLGKLKAGGATIVSDPRRADVIVINTCGFIEPAKMEAIETIL 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE-RAR 144
                K           V+V GC+ Q   EE+ +  P V+   G +++  + E L  R+ 
Sbjct: 62  EFAGSKK----------VIVMGCLVQRYKEELKKEIPEVSAYFGTESWDSIVEFLNLRSN 111

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
             KR++ T  S                      A+L + EGC++ C+FC +P  RG   S
Sbjct: 112 ESKRIITTPSSY---------------------AYLKVSEGCNRLCSFCAIPLIRGRHRS 150

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R + +VV+EA+ L D G+ E+ ++ Q+   + GK L  +     +LL +L +++G+  +R
Sbjct: 151 RPIEEVVEEAKYLADQGIKELCIVSQDTT-YYGKDLYAKPY-LVELLKALEKVEGIKWIR 208

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
               +P ++ + L+      + ++PY  +P+Q  S  +LKSM R +     R+ ++++R 
Sbjct: 209 LLYLYPTEIDENLLSYMAQSEKVLPYFDVPLQHVSTEVLKSMRRGYDEAFVREFVEKVRK 268

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
              +  + + FIVG+P E + D++  +D V +  +    +F Y    GT    + + + +
Sbjct: 269 NIANAVLRTTFIVGYPLERERDYQKLLDFVREGHFHWVGAFTYYQEEGTHAYALGDPIPQ 328

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL-VGR----SPWLQSV- 438
             K ER   L +  R+     N + VG+  E+L++   +E G + VGR    +P +  + 
Sbjct: 329 REKEERKEELLRVQRDITYQKNLSLVGKSFELLVDGFDEEFGFVPVGRIYAQAPEVDGIT 388

Query: 439 -VLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            V + K    GD++KV IT V    +  +++
Sbjct: 389 YVESDKELKAGDVVKVMITQVGDYDVGAKVL 419


>gi|295100395|emb|CBK97940.1| MiaB-like tRNA modifying enzyme [Faecalibacterium prausnitzii L2-6]
          Length = 431

 Score =  334 bits (858), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 117/447 (26%), Positives = 215/447 (48%), Gaps = 21/447 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R    + GC++N+ ++  +E MF S G+  V   ++AD+ V+N+C +     +K   +L 
Sbjct: 2   RVCFYTLGCKVNLNETGALEQMFRSAGFTIVPEGEEADVFVVNSCTVTNFGDQKSRKWLR 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R +       +E    + V+ GC  QA  EE  +     ++V G      + + + +   
Sbjct: 62  RAK-------RENPGAVTVLTGCYPQAFPEEAAQFM-EADLVCGNGDRKAILDNVLKLLD 113

Query: 146 GKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           G    V    ++  ++FE L +       +    AF+ +++GC++ C +CV+P  RG   
Sbjct: 114 GHERIVAIAPHAKGERFEELPV----ERFETHTRAFIKVEDGCNRQCAYCVIPRARGPVR 169

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SRS   ++ E R+L  +G  E+ L   ++ ++   GLD       +L+   + ++G+ R+
Sbjct: 170 SRSEESILAELRQLAASGYREVVLSAISLPSY---GLDTG-TNLVELVEKCARVEGIERI 225

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R  +  P  ++   I     +D L P  HL +QSG    L+ M R +TA +Y +++ ++R
Sbjct: 226 RLGSLDPDMLTPESITRLAAVDKLCPQYHLSLQSGCSATLRRMRRVYTAEQYAEVVRQLR 285

Query: 324 SVRPD--IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +   D  ++ ++D I GFPGET++DFR +   + +IG+ +   F YS R GTP  +  +Q
Sbjct: 286 AAYGDRPVSFTTDCICGFPGETEEDFRESCAFLKEIGFLKVHVFPYSRRSGTPAYDFPDQ 345

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           V E  K  R   +     + +      C G   +VL+E          G +     VV++
Sbjct: 346 VHEREKQARSREMNAIAEDIRREVLAGCEGSEDDVLLETPL-SGTLFTGYTRLYVPVVVS 404

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
           +  H  G+I+ VR+       +  E+V
Sbjct: 405 APGHKSGEIVHVRLGSYDGERVRAEMV 431


>gi|295092195|emb|CBK78302.1| MiaB-like tRNA modifying enzyme [Clostridium cf. saccharolyticum
           K10]
          Length = 443

 Score =  334 bits (858), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 133/439 (30%), Positives = 213/439 (48%), Gaps = 23/439 (5%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++  + + GC++N Y++  M+ M    GYE V   + AD+ V+NTC +   A +K    L
Sbjct: 2   RKAALHNLGCKVNAYETEAMQQMLEDAGYEIVPFREGADVYVINTCSVTNVADKKSRQML 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R +       K     +VV AGC  QA GEE+ ++   V++V+G      L E+LER  
Sbjct: 62  HRAK-------KMNPSAVVVAAGCYVQAAGEEL-KKDEAVDLVIGNNRKKDLVEVLERYF 113

Query: 145 FGKRVVD--TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
                 D   D     ++E+L I            AF+ +Q+GC++FC++C++PYTRG  
Sbjct: 114 NEHEGTDDIIDIGKTSEYEKLHI----RKIADHTRAFIKVQDGCNQFCSYCIIPYTRGRV 169

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK-----CTFSDLLYSLSEI 257
            SRS+  VV E   L  +G  EI L G +++++        +          L+  L  I
Sbjct: 170 RSRSMEDVVQEVEALAASGYKEIVLTGIHLSSYGADFKRTAENPEAAADLLSLIVRLDRI 229

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
            G+ R+R  +  PR ++D   +    L    P+ HL +QSG +  LK MNR +T  +Y  
Sbjct: 230 PGIERIRLGSLEPRIITDEFAETLAGLKSFCPHFHLSLQSGCNETLKRMNRHYTTEDYEA 289

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
             + +R    + AI++D IVGFP ET+++F  T   + +I + +   FKYS R GT  + 
Sbjct: 290 RCEILRRYFHNPAITTDVIVGFPQETEEEFEETRQFLKRIHFYEMHIFKYSRREGTRAAV 349

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG--KLVGRSPWL 435
           M  QV E  KAER   L     +  + +    +G+  EVL+E+     G   +VG +   
Sbjct: 350 MEGQVPEPKKAERSDILLALEEQMSLEYRRTFLGKEEEVLLEERISVDGEDYMVGHTRQY 409

Query: 436 QSVVLNSKNHNIGDIIKVR 454
              V+  +       + VR
Sbjct: 410 VKAVVPYREGLKN--VTVR 426


>gi|291166122|gb|EFE28168.1| Fe-S oxidoreductase [Filifactor alocis ATCC 35896]
          Length = 424

 Score =  334 bits (858), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 145/439 (33%), Positives = 232/439 (52%), Gaps = 18/439 (4%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N Y++  ME++F    Y+ VN  + AD+ V+NTC +   + +K    + R +  
Sbjct: 2   TLGCKVNQYETEAMEELFLQNQYDLVNFDEIADVYVVNTCTVTAMSDKKSRQMIRRTK-- 59

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL-PELLERARFGKRV 149
                K   + +VVV GC +Q   EE+L R   VN+V+G      +  E+L  +   KR+
Sbjct: 60  -----KINPNAIVVVTGCYSQKAPEEVL-RISEVNLVMGTSNRNMIIREVLRTSPEDKRI 113

Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209
           V  D      FE ++I   G        AF+ IQ+GCD+FCT+C++P+TRG   SRSL  
Sbjct: 114 VVDDIMKRKDFEEMNITTAG----DHTRAFVKIQDGCDRFCTYCIIPFTRGPVRSRSLEN 169

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSH 269
           +V E +KL++NG  E+ L G +V ++   G D +K T  D++  LS I GL R+R ++  
Sbjct: 170 IVYEVKKLVNNGYKEVVLTGIHVASY---GKDTKKETLIDVIERLSTIDGLERIRTSSVE 226

Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329
           P  +++  +K    ++   P+ HL +QSG ++ILK MNRR+TA EYR  +++IR      
Sbjct: 227 PIIITEDFLKRVSQVEQFCPHFHLSLQSGCNKILKKMNRRYTAEEYRNAVEQIRKTYTYP 286

Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAE 389
           AI++D IVGFP E + DF  T   +++I   +   F YSPR GT      E V +  K  
Sbjct: 287 AITTDVIVGFPEEEESDFEETKKFLEEIKLYEMHVFPYSPREGTVAYERGETVTKEEKHV 346

Query: 390 RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGD 449
           R   L     + +  F ++ +GQ++ VL E   +E     G +     V + +K      
Sbjct: 347 RSNTLISISNQNKKEFMESQIGQVLPVLFE--TREDDIYTGHTMNYMKVKVVTKESVENM 404

Query: 450 IIKVRITDVKISTLYGELV 468
           +  V + + K   + G +V
Sbjct: 405 VCDVLLKEAKEDYIDGVIV 423


>gi|326574282|gb|EGE24230.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Moraxella
           catarrhalis 101P30B1]
          Length = 356

 Score =  334 bits (858), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 147/357 (41%), Positives = 212/357 (59%), Gaps = 19/357 (5%)

Query: 126 VVVGPQTYYRLPELLERARFGKR------------VVDTDYSVEDKFERLSIVDGGYNRK 173
           +V GPQT +RLPEL E      +            VVD  +   +KF+ L        R 
Sbjct: 1   MVFGPQTLHRLPELYESTTNQAKTDMGQIPKNRIGVVDVSFPSIEKFDFLP-----EPRV 55

Query: 174 RGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVN 233
            G TAF++I EGC K+C+FCVVPYTRG E+SR L  V+ E   L + GV E+ LLGQNVN
Sbjct: 56  EGYTAFVSIMEGCSKYCSFCVVPYTRGEELSRPLDDVLAEIDSLAEQGVREVNLLGQNVN 115

Query: 234 AWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHL 293
            +RG+  DG  C FS+LL+ +S I G+ R+RYTTSHP + +D +I+A+  +D L+ +LHL
Sbjct: 116 GYRGEKDDGSICRFSELLHYVSYIDGIERIRYTTSHPLEFTDDIIEAYQSIDKLVSHLHL 175

Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
           P+QSGS+++L +M R HT   Y   I ++R +RPD+ +SSDFI+GFPGETD+DF  T+  
Sbjct: 176 PIQSGSNQVLAAMKRNHTVDVYMNQIAKLRKIRPDLHLSSDFIIGFPGETDEDFLQTLQF 235

Query: 354 VDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQI 413
              + +  ++SF YS R GTP S++ + V    K +RL   Q+ ++        A VGQ 
Sbjct: 236 AKDLDFDHSYSFIYSKRPGTPASDLPDDVSLETKKQRLAVFQELIKRSTFDKTQAMVGQT 295

Query: 414 IEVLIEKH-GKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLY-GELV 468
           + VL E+   + +G L G +   +SV+  +    +G  + ++IT      L  GELV
Sbjct: 296 LRVLAEEPANRRQGYLHGTADNTRSVIFKADTDLLGKFVMIKITKAISMHLVEGELV 352


>gi|194882251|ref|XP_001975226.1| GG22199 [Drosophila erecta]
 gi|190658413|gb|EDV55626.1| GG22199 [Drosophila erecta]
          Length = 557

 Score =  334 bits (858), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 124/462 (26%), Positives = 210/462 (45%), Gaps = 27/462 (5%)

Query: 14  VSQIVDQCIVP--QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCH 71
               + + ++P  Q+ FVK++GC  N  DS  M     + GY      ++ADL +LN+C 
Sbjct: 59  PKSTIHESVIPGTQKVFVKTWGCAHNNSDSEYMAGQLAAYGYRLSGK-EEADLWLLNSCT 117

Query: 72  IREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ 131
           ++  + +   + +          +       VVVAGCV Q   +           V+G Q
Sbjct: 118 VKNPSEDTFRNEIK---------LGMRNGKHVVVAGCVPQGAPKSDYLNG---LSVIGVQ 165

Query: 132 TYYRLPELLERARFGKRV--VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKF 189
              R+ E++E    G  V  +     V  +    + +     RK  +   ++I  GC   
Sbjct: 166 QIDRVVEVVEETLKGNSVQLLQNKKKVHGRRVAGAPLSLPKVRKNQLIEIISINSGCLNQ 225

Query: 190 CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSD 249
           CT+C   + RG   S    +VV+ AR+    G CEI L  ++  A  G+ +     +  +
Sbjct: 226 CTYCKTKHARGDLASYPPEEVVERARQSFAEGCCEIWLTSEDTGA-YGRDI---GSSLPE 281

Query: 250 LLYSLSE-IKGLVRLRYTTSHPRDMSDCLIKAHG--DLDVLMPYLHLPVQSGSDRILKSM 306
           LL+ L E I     LR   ++P  + + L +         +  +LH+PVQSGSD +L  M
Sbjct: 282 LLWQLVEVIPEHCMLRVGMTNPPYILEHLEEVAKVLQHPRVYAFLHVPVQSGSDSVLGEM 341

Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
            R +   ++  ++D +R   P + I++D I GFP ET+ DF  TM L  K  +   F  +
Sbjct: 342 KREYCRQDFEHVVDFLRERVPGVTIATDIICGFPTETEADFEETMTLCAKYRFPSLFINQ 401

Query: 367 YSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG 426
           + PR GTP + M E++  N+  +R   L               VG+I  VL+ +   +K 
Sbjct: 402 FFPRPGTPAAKM-ERIPANLVKKRTKRLTDLFY--SYEPYAKRVGEIYTVLVTEVSHDKL 458

Query: 427 KLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
             VG +   + V+L  +++ +G  + VRIT     ++ GE++
Sbjct: 459 HYVGHNKSYEQVLLPMRDNLLGTRVHVRITSASKFSMVGEIL 500


>gi|189501679|ref|YP_001957396.1| hypothetical protein Aasi_0223 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|189497120|gb|ACE05667.1| hypothetical protein Aasi_0223 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 441

 Score =  334 bits (858), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 113/440 (25%), Positives = 215/440 (48%), Gaps = 14/440 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +R    + GC++N  ++  +  +F  QGY++V   D+  + ++NTC + E+A +K     
Sbjct: 2   KRVAFYTLGCKLNFSETSAVGRLFTEQGYQKVEFEDNPHIFIINTCSVTEQADKKC---- 57

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
              R +    +K   +  +++ GC AQ + EEI    P V+VV+G    ++L E++    
Sbjct: 58  ---RRIVKDALKISPEAFIIIMGCYAQLKPEEIAS-IPGVDVVLGAHEKFKLLEIISSFD 113

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
              +       ++D    ++     ++       FL +Q+GC+  C+FC +P  RG   S
Sbjct: 114 KKGQAEVYVSCIKD----VNTFTHAHSIGDRTRTFLKVQDGCNYHCSFCTIPLARGKSRS 169

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
            ++  +V++ARK+ D G+ EI L G N+    G   +  +  F  L+ +L ++  + R R
Sbjct: 170 DTIESIVEQARKIADQGIKEIVLTGVNIG-DYGIIDNRRQTNFLSLIEALEKVVDIKRFR 228

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
            ++  P  ++D +I+        +P+ H+P+QSG++ ILK M RR+    Y + +  I+ 
Sbjct: 229 ISSIEPNLLTDEIIQFVAQSGRFVPHFHIPLQSGNNDILKLMRRRYQRELYVERVAHIKK 288

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           + P   I  D IVGFPGET++ F  T   ++++  +    F YS R  T    +   V +
Sbjct: 289 LMPHCCIGVDVIVGFPGETEEKFLDTYQFLNELDISYLHVFPYSERQNTQAITLEGIVSQ 348

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
             +  R   L+    ++Q  F +  +G+ +E+L E+     G + G S     V +    
Sbjct: 349 KERNRRASMLRILSDKKQRYFYEQNLGKTVEILFEQPDV-NGTIQGFSDNYVRVSVPYDA 407

Query: 445 HNIGDIIKVRITDVKISTLY 464
           + +  + +V++  +K   L 
Sbjct: 408 NLVNTLHQVQLKKLKADGLV 427


>gi|297191680|ref|ZP_06909078.1| radical SAM superfamily protein [Streptomyces pristinaespiralis
           ATCC 25486]
 gi|197721614|gb|EDY65522.1| radical SAM superfamily protein [Streptomyces pristinaespiralis
           ATCC 25486]
          Length = 498

 Score =  334 bits (858), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 129/483 (26%), Positives = 199/483 (41%), Gaps = 48/483 (9%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +   + + GC  N  DS  +     + G+E V    DAD+ V+NTC   E A +     L
Sbjct: 5   RTVALVTLGCARNEVDSEELAGRLAADGWELVEDASDADVAVVNTCGFVEAAKKDSVDAL 64

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
               +LK+     G    VV  GC+A+  G+++    P  + V+G   Y  + + L+   
Sbjct: 65  LEANDLKD----HGRTQAVVAVGCMAERYGKDLAEALPEADGVLGFDDYADISDRLQTIL 120

Query: 145 FGKRVV------------------------------DTDYSVEDKFERLSI---VDGGYN 171
            G                                  D   + ED  E ++          
Sbjct: 121 SGGVHASHTPRDRRKLLPLSPVERQQATDVALPGHGDVAPAPEDLPEGIAPESGPRAPLR 180

Query: 172 RKRG--VTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLG 229
           R+ G    A + +  GCD+ C+FC +P  RG  ISR  S V+ E R L + GV EI L+ 
Sbjct: 181 RRLGTSPVASVKLASGCDRRCSFCAIPSFRGSFISRRPSDVLGETRWLAEQGVKEIMLVS 240

Query: 230 QNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMP 289
           +N N   GK L G+      LL  L+ + G+ R+R +   P +M   LI        + P
Sbjct: 241 EN-NTSYGKDL-GDIRLLETLLPELAAVDGIERVRVSYLQPAEMRPGLIDVLTSTPKVAP 298

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           Y  L  Q  +  +L++M R      + ++++ IR   P   + S+FIVGFPGET+ DF  
Sbjct: 299 YFDLSFQHSAPGVLRAMRRFGDTERFLELLETIRGKAPQAGVRSNFIVGFPGETEADFAE 358

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDAC 409
               +          F YS   GT       ++D +V AERL  + +   E      +  
Sbjct: 359 LERFISAARLDAVGVFGYSDEEGTEAVTYDGKLDADVIAERLEHMSRIADELTAQRAEER 418

Query: 410 VGQIIEVLIEKHGKEKGKLVGR----SPWLQS-VVLNSKNHN-IGDIIKVRITDVKISTL 463
           +G+ +EVL+E    E G  VGR    +P     VV  S      G ++  +    +   L
Sbjct: 419 LGETLEVLVESVDDEDG-AVGRAAHQAPETDGQVVFTSSEGLEPGRMVVAKAVGTEGVDL 477

Query: 464 YGE 466
             E
Sbjct: 478 VAE 480


>gi|329960232|ref|ZP_08298674.1| tRNA methylthiotransferase YqeV [Bacteroides fluxus YIT 12057]
 gi|328532905|gb|EGF59682.1| tRNA methylthiotransferase YqeV [Bacteroides fluxus YIT 12057]
          Length = 439

 Score =  334 bits (858), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 114/427 (26%), Positives = 199/427 (46%), Gaps = 17/427 (3%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N  ++  +  +    G       + AD+ V+NTC + E A +K    + R+   
Sbjct: 16  TLGCKLNFSETSTIGKILREAGVRTARKGEKADICVVNTCSVTEVADKKCRQAIHRL--- 72

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               +K+     VVV GC AQ + + +  +   V+VV+G +    L + L   +      
Sbjct: 73  ----VKQHPGAFVVVTGCYAQLKPDTVA-KIEGVDVVLGAEQKKDLLQYLGNLQKH---- 123

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
            T  +     + +       +R      FL +Q+GCD +C++C +P+ RG   + S++ +
Sbjct: 124 GTGEAYTSALKDIHSFAPSCSRGDRTRFFLKVQDGCDYYCSYCTIPFARGRSRNGSIASL 183

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270
           V++AR+    G  EI L G N+    G        TF DL+ +L E++G+ R R ++  P
Sbjct: 184 VEQARQAAAEGGREIVLTGVNI----GDFGKTTGETFFDLVKALDEVEGIERYRISSIEP 239

Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330
             +++ +I+        MP+ H+P+QSGSD +LK M RR+    +   + +I+   PD  
Sbjct: 240 NLLTEEIIEFVSRSKRFMPHFHIPLQSGSDEVLKLMRRRYDTALFASKVKKIKEAMPDSF 299

Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER 390
           I  D IVG  GET++ F    + +  +   Q   F YS R GT    +   V    K  R
Sbjct: 300 IGVDVIVGTRGETEEYFEQAYEFIKGLDVTQLHVFSYSERPGTQALKIDHVVSPAEKHVR 359

Query: 391 LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDI 450
              L +   E+  +F    +GQ + VL+E+  K    + G +P    V +   +     +
Sbjct: 360 SQRLLELSEEKTRAFYARHIGQAMPVLLER-SKPGTPMHGFTPNYIRVEVPHDDALDNQV 418

Query: 451 IKVRITD 457
           + VR+ D
Sbjct: 419 VTVRLGD 425


>gi|194334320|ref|YP_002016180.1| MiaB-like tRNA modifying enzyme YliG [Prosthecochloris aestuarii
           DSM 271]
 gi|238066450|sp|B4S8Z6|RIMO_PROA2 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|194312138|gb|ACF46533.1| MiaB-like tRNA modifying enzyme YliG [Prosthecochloris aestuarii
           DSM 271]
          Length = 433

 Score =  334 bits (858), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 115/451 (25%), Positives = 191/451 (42%), Gaps = 34/451 (7%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           Q  F+ S GC  N  DS R+       G    +  DDAD+I++NTC     A E+  + +
Sbjct: 6   QSIFLLSLGCSKNTVDSERLIRQAELNGLHFTDQADDADIIIINTCGFIADAKEESINEI 65

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
                 +      G    + V GC++     E+    P V+   G      +  +L    
Sbjct: 66  LAATEKR----HNGEIKALFVMGCLSALYSRELRAELPEVDHFFGTSDLEEIISVL---- 117

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
                    Y   +  ER  +    Y       A+L I EGC + C+FC +P  RG   S
Sbjct: 118 ------GGSYRPSNIHERTLLTPPHY-------AWLKIAEGCSRTCSFCAIPKMRGRYRS 164

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
             + ++  EA  L+ NGV E+ ++ Q++    G   D E+   +DLL  L+  +    +R
Sbjct: 165 EPIERLEKEASLLLKNGVRELNIISQDIT-QYGWDFD-ERSHLNDLLKKLAAQE-FSWIR 221

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
              ++P      +I    +   +  YL +PVQ  SDRILKSM R         +++ IR 
Sbjct: 222 LLYAYPLHFPLDVIDTMREHANICNYLDMPVQHISDRILKSMQRGIDKKGTIGLLESIRK 281

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN-MLEQVD 383
             PDI + +  IVG+PGETD +F   ++ V ++ + +   F YS    T     + + + 
Sbjct: 282 KNPDIRLRTTMIVGYPGETDREFDELLEFVAQLRFDRLGCFPYSHEEHTSAFKHLEDDIP 341

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPW------LQS 437
           E +K ER+  L +         N    G++++VL+++   E      R+ +         
Sbjct: 342 EKIKKERVEALMELQESIAAERNRELEGRVMKVLVDEV--EGSIAYARTEYDAPEVDNDV 399

Query: 438 VV-LNSKNHNIGDIIKVRITDVKISTLYGEL 467
           +V +       GD   V I +     L+G +
Sbjct: 400 LVDIGDNPVQPGDFCTVTIEESSAYELHGRV 430


>gi|224536031|ref|ZP_03676570.1| hypothetical protein BACCELL_00895 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224522356|gb|EEF91461.1| hypothetical protein BACCELL_00895 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 439

 Score =  334 bits (858), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 115/427 (26%), Positives = 200/427 (46%), Gaps = 17/427 (3%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N  ++  +  +    G       + AD+ V+NTC + E A +K    + R+   
Sbjct: 16  TLGCKLNFSETSTIGKILRDAGVRTARKGEKADICVVNTCSVTEVADKKCRQAIHRL--- 72

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               +K+     VVV GC AQ + E +  +   V+VV+G +    L + L   +  +   
Sbjct: 73  ----VKQHPGAFVVVTGCYAQLKPETVA-KIEGVDVVLGAEQKKDLLQYLGNLQKNESGE 127

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
               +++D            +R      FL +Q+GCD FC++C +P+ RG   + +++ +
Sbjct: 128 AYASALKDIHSFAP----SCSRGDRTRYFLKVQDGCDYFCSYCTIPFARGRSRNGTIASM 183

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270
           V++AR+    G  EI L G N+    G        TF +L+ +L E++G+ R R ++  P
Sbjct: 184 VEQARQAAAEGGKEIVLTGVNI----GDFGKTTGETFFNLVKALDEVEGIERYRISSIEP 239

Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330
             ++D +I+        MP+ H+P+QSGSD +LK M RR+    +   + +++ V PD  
Sbjct: 240 NLLTDEIIEFVSHSRSFMPHFHIPLQSGSDEVLKLMRRRYDTELFASKVRKVKEVMPDAF 299

Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER 390
           I  D IVG  GETD+ F    + +  +   Q   F YS R GT    +   V    K  R
Sbjct: 300 IGVDVIVGTRGETDEYFEQAYEFIKSLDVTQLHVFSYSERPGTQALKIDHVVTPEEKHRR 359

Query: 391 LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDI 450
              L +   E+  +F    +GQ + VL+E+  K    + G +     V +   +     +
Sbjct: 360 SQRLLELSDEKTHAFYARHIGQTLPVLLER-SKPGTPMHGFTANYIRVEVPHNDTLDNQV 418

Query: 451 IKVRITD 457
           + VR+ D
Sbjct: 419 VPVRLGD 425


>gi|210633072|ref|ZP_03297639.1| hypothetical protein COLSTE_01547 [Collinsella stercoris DSM 13279]
 gi|210159226|gb|EEA90197.1| hypothetical protein COLSTE_01547 [Collinsella stercoris DSM 13279]
          Length = 445

 Score =  334 bits (858), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 131/450 (29%), Positives = 210/450 (46%), Gaps = 26/450 (5%)

Query: 30  KSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRN 89
            + GC  N  D+ RM  +    GY  V   D AD +++NTC     A  +       +  
Sbjct: 9   VTLGCAKNEVDTDRMRSLLNGAGYNEVFEADQADAVIINTCSFLASATSESIETTLALAE 68

Query: 90  LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149
                ++   D  +V+ GCV    G ++    P V   V       +  +++     +R 
Sbjct: 69  EVAEGVR---DTRIVMCGCVPSRYGADLPEELPEVAAFVRADEEDGIVSVMDGVLGVERD 125

Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209
           V            L  V           A++ I +GCD+FC+FC +PY RG   SRS   
Sbjct: 126 V------------LPHVPRIKRTVESAVAYVKISDGCDRFCSFCAIPYIRGRYHSRSAED 173

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG--EKCTFSDLLYSLSEI--KGLVRLRY 265
           ++ E R+L+  GV EI L+GQ+   W     +G       + L+ ++SE      V +R 
Sbjct: 174 IIAEVRELVAGGVREIVLIGQDTGIWGTDFTEGVEGPANLAQLMVAVSEAVRPANVWIRV 233

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
               P  M+D LI A  D   ++PY+ +PVQ  + RILK+M+R  +  E  ++  ++R+ 
Sbjct: 234 LYLQPEGMTDELIAAIRDTPEVLPYIDIPVQHCNARILKAMHRSGSEEELTRLFAKLRAE 293

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P + I +  +VGFP ETDD+ +  +  +D+ G+     F YSP  GT  + M  QVDE+
Sbjct: 294 IPGMVIRTTSLVGFPSETDDEAKQMLAFMDREGFDYTSVFPYSPEEGTRAAAMDGQVDED 353

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE--KHGKEKGKLVGR----SPWLQS-V 438
           VK ER             +   A VG++ EV+++  +   E  +L+G     +P     V
Sbjct: 354 VKLERTQAAMDLAESLGFAATAAHVGEVAEVIVDGVEETDEGLELIGHAWFQAPDSDGAV 413

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            L++ +  +GDI++VR TD     L GE+V
Sbjct: 414 HLDATDAAVGDILQVRFTDSFCYELIGEVV 443


>gi|51246808|ref|YP_066692.1| hypothetical protein DP2956 [Desulfotalea psychrophila LSv54]
 gi|50877845|emb|CAG37685.1| conserved hypothetical protein [Desulfotalea psychrophila LSv54]
          Length = 434

 Score =  334 bits (857), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 114/447 (25%), Positives = 212/447 (47%), Gaps = 17/447 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +R  + + GC++N ++S    D     GY+ V   ++AD I++NTC +   A+ +    +
Sbjct: 2   KRISITTLGCKVNQFESASFSDNLSQTGYKIVGHNEEADYIIINTCTVTAAASAQSRHSI 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVN---VVVGPQTYYRLPELLE 141
                L            +++ GC  +   EEI     +      ++G     ++ + + 
Sbjct: 62  RHALRL-------SPTAKIIITGCYVEIGAEEIQAIEELRGREYHIIGNSCKDQVVDTI- 113

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           R+   ++++  D     +  RL +   G         +L IQ+GC  FCT+C+VP+TRG 
Sbjct: 114 RSTGAEQLILGDIRKAKEICRLPVRHFG----DRTRTYLRIQDGCQSFCTYCIVPFTRGP 169

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
             S  L +V+ + R   + G  E  L G ++  W G  L G + TF+DLL  LS     +
Sbjct: 170 SRSLPLDEVIAQTRAFAEEGYQETVLTGIHIGEW-GHDLKGGE-TFTDLLDRLSAEVPQM 227

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R R ++  P +++  +++       + P+LH+P+QSGSD+IL  MNR +    +  II+ 
Sbjct: 228 RFRISSLEPTEINARILELIKTRANIFPHLHIPLQSGSDQILARMNRHYDTARFAGIIEA 287

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
                P++ I  D + GFPGE+++ F +    + K+ +     F YS R GT  +   +Q
Sbjct: 288 CHQAIPNLCIGIDVLAGFPGESEEHFASAYSFLQKLDFTYLHVFPYSIRPGTKAAEFTDQ 347

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           V  ++KA R+  L+     ++ +F    +G+ + V +E    + G L G +     V   
Sbjct: 348 VASDIKAIRVKKLRALSDTKKSAFYQKQIGKTLPVQVEGKRAKDGLLRGYTDNYTLVHFA 407

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
             +  +   + + + + +   +YG+LV
Sbjct: 408 GADDLVRSSVDITLLENRDEYVYGKLV 434


>gi|312129877|ref|YP_003997217.1| miab-like tRNA modifying enzyme [Leadbetterella byssophila DSM
           17132]
 gi|311906423|gb|ADQ16864.1| MiaB-like tRNA modifying enzyme [Leadbetterella byssophila DSM
           17132]
          Length = 442

 Score =  334 bits (857), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 123/432 (28%), Positives = 208/432 (48%), Gaps = 13/432 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +     + GC++N  ++  +   F  +G+++V   ++ D+ ++NTC + E A +K    +
Sbjct: 2   KSVAFYTLGCKLNFSETSTISRTFEEKGFKKVGFNENPDIFIINTCSVTENADKKCRKIV 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
              +       K   +  V + GC AQ +  EI      V+ V+G    +RL ELL    
Sbjct: 62  KEAQ-------KINPNGFVAIIGCYAQLKPREIA-EIEGVDAVLGAAEKFRLHELLPTFE 113

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
              R V+         E L      Y+       FL +Q+GCD  C++C +P  RG   S
Sbjct: 114 KTSRPVEEKVYARSIDEPLE-YHTSYSLHDRTRTFLKVQDGCDYPCSYCTIPMARGASRS 172

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT-FSDLLYSLSEIKGLVRL 263
            ++  VV  AR++  NGV EI L G N+  +    +DG++ + F DL+ +L E++G+ R 
Sbjct: 173 DTIENVVKAAREIAANGVKEIVLTGVNIGDF--GIIDGKRTSSFLDLIQALDEVEGIERF 230

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R ++  P  +++ +I+        +P+ H+P+QSGS++IL  M RR+    Y + +  IR
Sbjct: 231 RISSIEPNLLTNEIIQFVAHSKRFVPHFHIPLQSGSNKILGLMRRRYRRELYAERVAAIR 290

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
            V PD  I  D IVG PGE  +DF  T + ++++       F YS R  T    +   V 
Sbjct: 291 EVMPDCCIGVDVIVGHPGELHEDFIDTYNFLNELDINYLHVFTYSERANTKALEIKPVVG 350

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
              + ER   L     +++ +F +  +G+   VL E+ G+    + G +     VV    
Sbjct: 351 MRDRNERSKMLHILSDKKRRAFYEDNLGKEFPVLFEE-GEGGDIMHGFTSNYVKVVAKYD 409

Query: 444 NHNIGDIIKVRI 455
              I DI+KVR+
Sbjct: 410 PLRINDIVKVRL 421


>gi|195382799|ref|XP_002050116.1| GJ21959 [Drosophila virilis]
 gi|194144913|gb|EDW61309.1| GJ21959 [Drosophila virilis]
          Length = 553

 Score =  334 bits (857), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 129/465 (27%), Positives = 221/465 (47%), Gaps = 27/465 (5%)

Query: 11  AHMVSQ-IVDQCIVP--QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVL 67
           A + +Q  + + +VP  Q+ +VK++GC  N  DS  M     + GY      D+ADL +L
Sbjct: 57  APLQAQKTIYESVVPGTQKVYVKTWGCAHNNSDSEYMAGQLAAYGYNLSGK-DEADLWLL 115

Query: 68  NTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVV 127
           N+C ++  + +   + +        S ++ G    VVVAGCV Q   +    R      V
Sbjct: 116 NSCTVKNPSEDTFRNEI-------ESGMRNGKH--VVVAGCVPQGAPKSDYLRG---LSV 163

Query: 128 VGPQTYYRLPELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGC 186
           +G Q   R+ E++E    G  V +  +  V  +    + +     RK  +   ++I  GC
Sbjct: 164 IGVQQIDRVVEVVEETLKGHSVRLLQNKKVHGRRVAGAALSLPKVRKNPLIEIISINSGC 223

Query: 187 DKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT 246
              CT+C   + RG   S    ++V+ AR+  D G CEI L  ++  A  G+ +     +
Sbjct: 224 LNQCTYCKTKHARGDLASYPPDEIVERARQSFDEGCCEIWLTSEDTGA-YGRDI---GSS 279

Query: 247 FSDLLYSLSE-IKGLVRLRYTTSHPRDMSDCLIKAHG--DLDVLMPYLHLPVQSGSDRIL 303
             +LL+ L E I     LR   ++P  + + L +         +  +LH+PVQSGSD +L
Sbjct: 280 LPELLWQLVEVIPEHCMLRVGMTNPPYILEHLEEVAKVLQHPRVYAFLHVPVQSGSDSVL 339

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
             M R +   ++  ++D +RS  P + I++D I GFP ET+ DF  TM L +K  +   F
Sbjct: 340 GEMKREYCRKDFEHVVDFLRSRVPGLTIATDIICGFPTETEQDFEETMTLCEKYRFPSLF 399

Query: 364 SFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK 423
             ++ PR GTP + M E++  N+  +R   L                GQ+  VL+ +   
Sbjct: 400 INQFFPRPGTPAAKM-ERIPANLVKKRTKRLTDLFY--SYEPYAGREGQLYTVLVTEISH 456

Query: 424 EKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           +K   VG +   + V+L  +++ +G  ++VRIT     ++  E++
Sbjct: 457 DKLHYVGHNKSYEQVLLPMRDNLLGTRVRVRITGTSKFSMMAEIL 501


>gi|312384872|gb|EFR29498.1| hypothetical protein AND_01451 [Anopheles darlingi]
          Length = 526

 Score =  334 bits (857), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 118/465 (25%), Positives = 204/465 (43%), Gaps = 26/465 (5%)

Query: 11  AHMVSQIVDQCIVPQR--FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLN 68
             +  + V + ++P+    ++K++GC  N  D+  M       GY   +    ADL VLN
Sbjct: 50  QPVAEKPVLESVIPETQQIYMKTWGCAHNTSDTEYMAGQLAQYGYNLTSDKKAADLWVLN 109

Query: 69  TCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVV 128
           +C ++  + +   + +                  VVVAGCV QA              VV
Sbjct: 110 SCTVKNPSEDTFRNEIEAAHRA---------GKHVVVAGCVPQAAPRSDYLHG---LSVV 157

Query: 129 GPQTYYRLPELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCD 187
           G Q   R+ E++E    G  V +     V  +      +     RK  +   + I  GC 
Sbjct: 158 GVQQIDRVAEVVEETLKGHSVRLLQAKKVNGRKVAGPKLALPKVRKNPLIEVIPINSGCL 217

Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTF 247
             CT+C   + R   +S  + ++V+ A+++ + GVCEI L  ++     G+ +D    + 
Sbjct: 218 NSCTYCKTKFARADLVSYPVQEIVERAQQVFEEGVCEIWLTSEDTGT-YGRDID---SSL 273

Query: 248 SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGD---LDVLMPYLHLPVQSGSDRILK 304
            +LL+ L E+     +              ++          +  +LH+PVQSGSD IL 
Sbjct: 274 PELLWKLVEVIPEGCMMRLGMTNPPYILEHLEEMAKVLAHPRVYSFLHIPVQSGSDTILG 333

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
            M R +   E+ +++D +R   P I I++D I GFPGET+ DF+ T+ L  K  +   F 
Sbjct: 334 EMKREYCVQEFERVVDFLREKVPGITIATDIICGFPGETETDFQGTVALCKKYEFPSLFI 393

Query: 365 FKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACV-GQIIEVLIEKHGK 423
            ++ PR GTP + M E+V  N    R   L                 G I  VL+ +   
Sbjct: 394 NQFFPRPGTPAAKM-ERVPANEVKTRTKRLTDLF--HSYEPYKKYTPGTIQTVLVTEISH 450

Query: 424 EKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           ++   VG + + + V+L   N+ +G  ++V IT     +++G+++
Sbjct: 451 DRKHYVGHNKFYEQVLLPMHNNLLGKQVEVEITGCTKFSMFGKVL 495


>gi|229496330|ref|ZP_04390050.1| conserved hypothetical protein [Porphyromonas endodontalis ATCC
           35406]
 gi|229316908|gb|EEN82821.1| conserved hypothetical protein [Porphyromonas endodontalis ATCC
           35406]
          Length = 436

 Score =  334 bits (857), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 118/451 (26%), Positives = 208/451 (46%), Gaps = 36/451 (7%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEKVYSFL 84
             V + GC  N+ DS  +   F + GY   +       +++V+NTC     A E+  + +
Sbjct: 6   VNVITLGCSKNLVDSELLMRRFAAAGYSVRHDPKRITGEIVVINTCGFIGAAQEESINTI 65

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
                 K      G    ++V GC+++    ++    P ++ + G   +  L   L    
Sbjct: 66  LAFVRAKEE----GRIGKLIVMGCLSERFRGDLKAEIPEIDALYGKFDWKNLVADL---- 117

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
                    ++ E    RL      Y       A++ I EGCD+ C++C +P   G + S
Sbjct: 118 ------GPSFAPETDTARLLTTPKHY-------AYVKISEGCDRGCSYCAIPLITGRQKS 164

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R++  +VDE + L+D G  E  L+ Q++ +  G+ L G K   + LL  LS++ G+ RLR
Sbjct: 165 RTIESLVDEVKTLVDEGCSEFQLIAQDLTS-YGRDL-GGKVLLAPLLERLSDLPGVRRLR 222

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
              ++P      ++    + D +  YL + +Q  +D +L+ M R  T  E  +++D IR 
Sbjct: 223 LHYAYPTQFPREILPIMRERDNICKYLDIALQHATDNMLQKMRRNITQLETERLLDEIRK 282

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML-EQVD 383
             P IA+ +  IVG PGET+ DFRA  + +++  + +  +F YS  +GT       +++ 
Sbjct: 283 EVPGIALRTTLIVGHPGETEQDFRALCEFIERRQFERMGAFAYSHEVGTYAYKHYQDEIP 342

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVV 439
           E VK ERL  L         +++ + VG   EVLI++  +E+  +VGR+    P +   V
Sbjct: 343 EEVKMERLEQLMALQEPIAEAYSRSLVGTTQEVLIDR--REEEFVVGRTQYDSPEVDPEV 400

Query: 440 LN----SKNHNIGDIIKVRITDVKISTLYGE 466
           L     + +  +G    + I  V    L  +
Sbjct: 401 LIPVEQAHSLRVGHYYPLPIVGVDGFDLLAQ 431


>gi|222100720|ref|YP_002535288.1| MiaB-like tRNA modifying enzyme [Thermotoga neapolitana DSM 4359]
 gi|221573110|gb|ACM23922.1| MiaB-like tRNA modifying enzyme [Thermotoga neapolitana DSM 4359]
          Length = 434

 Score =  334 bits (857), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 128/437 (29%), Positives = 227/437 (51%), Gaps = 24/437 (5%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +   ++++GC++N Y+S  M +     GY  +    +A   ++N+C + ++  +K     
Sbjct: 2   RTVRIETFGCKVNQYESEYMAEQLEKAGYTVLP-AGEASYYIINSCVVTQEVEKK----- 55

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             ++ L  S  ++  D  +++ GC AQ   EE  ++ P VN+V+G      + + L    
Sbjct: 56  --VKRLVKSIRRKNRDAKIILTGCFAQLFPEE-AKKLP-VNMVLGISEKKNIVDHLLSLN 111

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG-IEI 203
             +++V    S  D      +     +R R   A++ +++GCD  CT+C + + RG    
Sbjct: 112 GEQKLV---VSAPDSPVYEKVKGSFEDRTR---AYIKVEDGCDNGCTYCAIRFARGTKVR 165

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           S+ L    +E  K++  G  EI + G N+    GK +     T  DLL  +  + G  R+
Sbjct: 166 SKPLELFKEEFEKMVIKGYKEIVITGVNLG-KYGKDI---GTTLVDLLKIVEHVPGDYRV 221

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R ++ +  D++D L++   D   L P+LH+ VQSGSDR+LK M RR+++ ++ ++++++R
Sbjct: 222 RLSSLNVEDITDELVEVFRDNPRLCPHLHISVQSGSDRVLKRMGRRYSSSDFLKVVEKLR 281

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           S+ PD +I++D IVGFPGETD+DF  T+ L++++ +++   F+YSPR GTP S   + V 
Sbjct: 282 SINPDFSITTDIIVGFPGETDEDFLKTVKLLEEVEFSRVHIFRYSPRPGTPASTFSDAVP 341

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
           E+ K ERL  L++K +E    +    V +   VL E     KG L G   +         
Sbjct: 342 EHKKKERLNILKEKAKEVSHRYKRRMVNKKRRVLAE-WYIAKGVLSGYDEYYVKHEFVGD 400

Query: 444 NHNIGDIIKVRITDVKI 460
              IG    VR+  +  
Sbjct: 401 G--IGVFHNVRVKSLSE 415


>gi|89891221|ref|ZP_01202728.1| 2-methylthioadenine synthetase [Flavobacteria bacterium BBFL7]
 gi|89516533|gb|EAS19193.1| 2-methylthioadenine synthetase [Flavobacteria bacterium BBFL7]
          Length = 447

 Score =  334 bits (857), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 122/450 (27%), Positives = 215/450 (47%), Gaps = 17/450 (3%)

Query: 18  VDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA 77
           +   I  +     + GC++N  ++  +   F  +G+ERV+    AD+ V+NTC + E A 
Sbjct: 9   MSTEIATKSVAFYTLGCKLNFSETSTIARDFEQEGFERVDFEKRADIYVINTCSVTENAD 68

Query: 78  EKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLP 137
           +       R +++     +   D   +  GC AQ + EE+      V++V+G    +++ 
Sbjct: 69  K-------RFKSIVKKAQQVNEDAFTIAVGCYAQLKPEELAAVD-GVDLVLGATEKFKIT 120

Query: 138 ELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197
           + L +    +           + +      G Y+      AFL +Q+GCD  CT+C +P 
Sbjct: 121 DYLNQLSKEE----PTQIHSCEIDEADFYVGSYSIGDRTRAFLKVQDGCDYKCTYCTIPL 176

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK---CTFSDLLYSL 254
            RGI  S +L  V++ AR + + G+ EI L G N+    GKG  G K    TF DL+++L
Sbjct: 177 ARGISRSDTLENVMENARLISEQGIKEIVLTGVNIG-DYGKGEFGNKRHEHTFLDLVHAL 235

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
             + G+ RLR ++  P  + +  I+     +  +P+ H+P+Q+G++ +L  M RR+    
Sbjct: 236 DTVNGIERLRISSIEPNLLKNETIEFVSGANAFVPHFHIPLQAGNNELLGKMKRRYNREL 295

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
           Y   + +I+ V PD  I  D IVGFPGETDD F  T + +  +  +    F YS R  T 
Sbjct: 296 YVDRVTKIKEVMPDCCIGVDVIVGFPGETDDHFLDTYNFLSDLNISYLHVFTYSERDNTE 355

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPW 434
            + M   V + V+A+R   L+    +++ +F ++ +G+   VL E   +E G + G +  
Sbjct: 356 AATMEGVVPKKVRAKRSKMLRGLSVKKRRAFYESQLGKTKTVLWEAENRE-GFIQGFTEN 414

Query: 435 LQSVVLNSKNHNIGDIIKVRITDVKISTLY 464
              V        + ++  V +  +    L 
Sbjct: 415 YVKVKTYWNPELVNELQTVTLKSIDEDGLV 444


>gi|26553616|ref|NP_757550.1| hypothetical protein MYPE1630 [Mycoplasma penetrans HF-2]
 gi|26453622|dbj|BAC43954.1| conserved hypothetical protein [Mycoplasma penetrans HF-2]
          Length = 442

 Score =  334 bits (857), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 124/446 (27%), Positives = 216/446 (48%), Gaps = 21/446 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
            F + + GC++N+++S  + +     G   V     AD+ ++NTC +  KA  K   ++ 
Sbjct: 14  TFAIHTLGCKVNLFESNVIRNDLLLNGLVEVPFDAQADVYIINTCSVTNKADSKSKLYIR 73

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           +         +     +VVVAGC++Q   +  L +   +++ +G +  Y + +LL     
Sbjct: 74  KA-------SRTNKKGIVVVAGCMSQINKD--LMKELKIDIQIGNKYKYSIYDLLTNYSK 124

Query: 146 GKRVV--DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            K  +    +   E  FE+   +    + K    AF+ IQ+GC+  C++C++P+TRG + 
Sbjct: 125 NKEKILKIENLLKEKVFEKNESI----SFKENTRAFIKIQDGCNFMCSYCIIPFTRGKQR 180

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           S  L+ +V+E   L+D G  EI L G N         D +K  F DLL +++EIK   R+
Sbjct: 181 SNDLNTIVNEVHSLVDQGYKEIVLTGVNTAG----FFDQDKNNFYDLLVAINEIKKDFRV 236

Query: 264 RYTTSHPRDMSDCLIKAHGDLDV-LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           R ++  P  ++D ++            + H+ +QSGSD +L  MNRR+   +Y ++I +I
Sbjct: 237 RISSVEPFQITDEIVNLIASNPKRFCQHWHICLQSGSDNVLNKMNRRYLTSQYEELIKKI 296

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           RS+ P+   ++D+IVGFP E+  D   +M+ + KI +     F YS R GT  S + + V
Sbjct: 297 RSINPNTLFTTDYIVGFPSESHQDHLDSMEFLKKIKFFDMHIFPYSKREGTKSSTIKD-V 355

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
            +  K ER   +       + S   + + + +EV+ E   + +    G S     V + S
Sbjct: 356 HDATKKERFKNVAAFNFATKFSILKSMLNKELEVIFEHKNENEQYYSGYSSEYCRVYVES 415

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
                  I KV+I  V    L G +V
Sbjct: 416 NTPLENKIYKVKIEKVLSDGLLGTIV 441


>gi|149186943|ref|ZP_01865252.1| hypothetical protein ED21_22333 [Erythrobacter sp. SD-21]
 gi|148829452|gb|EDL47894.1| hypothetical protein ED21_22333 [Erythrobacter sp. SD-21]
          Length = 457

 Score =  334 bits (857), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 121/478 (25%), Positives = 202/478 (42%), Gaps = 54/478 (11%)

Query: 14  VSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIR 73
            + I DQ    ++  + S GC   + DS R+     + GY        AD++++NTC   
Sbjct: 5   TTPIPDQ----KKVGMVSLGCPKALVDSERILTRLRADGYAMSPDYAGADVVLVNTCGFL 60

Query: 74  EKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTY 133
           + A E+    +G              +  V+V GC+ + E   I    P V  V G   Y
Sbjct: 61  DSAKEESLQAIGEA---------IAENGRVIVTGCMGE-EANAIRAAHPSVLAVTGAHQY 110

Query: 134 YRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC 193
             + E +       +    D           I            ++L I EGC+  C FC
Sbjct: 111 EAVVEAVHEHAPPSQGPYIDL----------IPQPDVKLTPRHYSYLKISEGCNHSCAFC 160

Query: 194 VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE---------K 244
           ++P  RG   SR +  V+ EA KL+  G  E+ ++ Q+ +A  G     E         +
Sbjct: 161 IIPDLRGKLASRRIDAVLREAEKLVAAGTKELLVISQDTSA-YGVDTRHESKAWKGREVR 219

Query: 245 CTFSDLLYSLSEI------KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
              ++L   L ++         VRL Y   +P   +   + A G   +L PYL +P Q  
Sbjct: 220 AHMTELARELGQLDIGGGMPPWVRLHYVYPYPHVDAVIPLMAEG---LLTPYLDIPFQHA 276

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           S ++L+SM R     +  + +   R + P+IAI S F+VGFPGETDDDF+  +D +++  
Sbjct: 277 SPKVLRSMKRPANEAKVLERLKGWREICPEIAIRSSFVVGFPGETDDDFKYLLDWLEEAQ 336

Query: 359 YAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI 418
             +  +F++ P  G   +++ + V E +K ER   + +       +   A VG+ I V+I
Sbjct: 337 LDRVGAFRFEPVEGAQANHLPDPVPEEIKEERYARVMEVTERISSAKLQAKVGRSIPVII 396

Query: 419 EKHGKEK--------GKLVGRSPWLQSVVL---NSKNHNIGDIIKVRITDVKISTLYG 465
           ++ G+          G+    +P +   V           GDI+ V + D     L+G
Sbjct: 397 DEVGEPDEDGDIGATGRSQADAPEIDGAVYLRNVPGTLAAGDIVNVTVEDADAHDLFG 454


>gi|270295900|ref|ZP_06202100.1| MiaB-like tRNA modifying enzyme [Bacteroides sp. D20]
 gi|270273304|gb|EFA19166.1| MiaB-like tRNA modifying enzyme [Bacteroides sp. D20]
          Length = 438

 Score =  334 bits (856), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 118/437 (27%), Positives = 201/437 (45%), Gaps = 19/437 (4%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N  ++  +  +    G       + AD+ V+NTC + E A +K    + ++   
Sbjct: 16  TLGCKLNFSETSTIGKILREAGVRTARKGEKADICVVNTCSVTEVADKKCRQAIHKL--- 72

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               +K+     VVV GC AQ + E +  +   V+VV+G +    L   L   +  +   
Sbjct: 73  ----VKQHPGAFVVVTGCYAQLKPETVA-KIEGVDVVLGAEQKKDLLHYLGNLQKHE--- 124

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
            T  +     + +       +R      FL +Q+GCD +C++C +P+ RG   + S++ +
Sbjct: 125 -TGEAYTSALKDIRSFAPSCSRGDRTRFFLKVQDGCDYYCSYCTIPFARGRSRNGSIASM 183

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270
           V++A +    G  EI L G N+    G        TF DL+ +L E++G+ R R ++  P
Sbjct: 184 VEQASQAAAEGGKEIVLTGVNI----GDFGKSTGETFFDLVKALDEVEGIERYRISSIEP 239

Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330
             ++D +I+        MP+ H+P+QSGSD +LK M RR+    +   I +I+ V PD  
Sbjct: 240 NLLTDEIIEYVSRSRRFMPHFHIPLQSGSDEVLKLMRRRYDTALFASKIKKIKEVMPDSF 299

Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER 390
           I  D IVG  GET++ F    + +  +   Q   F YS R GT    +   V    K  R
Sbjct: 300 IGVDVIVGTRGETEEYFGQAYEFIKSLDVTQLHVFSYSERPGTQALKIDHVVAPEEKHRR 359

Query: 391 LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDI 450
              L +   E+  +F    +GQ + VL+E+  K    + G +P    V +         +
Sbjct: 360 SQQLLELSDEKTRAFYARHIGQTMPVLLERP-KPGLPMHGFTPNYIRVEVPHDAALDNQL 418

Query: 451 IKVRITD--VKISTLYG 465
           + VR+ D     + L G
Sbjct: 419 VSVRLGDFNADGTALLG 435


>gi|289192765|ref|YP_003458706.1| MiaB-like tRNA modifying enzyme [Methanocaldococcus sp. FS406-22]
 gi|288939215|gb|ADC69970.1| MiaB-like tRNA modifying enzyme [Methanocaldococcus sp. FS406-22]
          Length = 415

 Score =  334 bits (856), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 126/446 (28%), Positives = 224/446 (50%), Gaps = 35/446 (7%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + +V+ YGC +N  D+  +++     G+E    +++A++ ++NTC +R +   ++   + 
Sbjct: 2   KVYVEGYGCVLNTADTEIIKNSLREHGFEITEDLEEANIAIINTCVVRLETENRMIYRIN 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            ++NL            VV+AGC+ +A  E++        + + P+  +R  E+L+    
Sbjct: 62  ELKNLGKE---------VVIAGCLPKALKEKVKGF-----LHIYPREAHRAGEILKDYI- 106

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            ++     Y  ED  + L            + + L I EGC   C++C+V   RG  IS 
Sbjct: 107 -EKHYRMPYIEEDINKTL--YKKLDYLTPSLISPLPICEGCIGNCSYCIVKIARGNLISY 163

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
              ++V++A++LI+ G   + +  Q+  A  G  +       ++LL  L++I+G   +R 
Sbjct: 164 PREKIVNKAKELINKGAKCLLITAQDT-ACYGFDIGDN---LANLLNDLTQIEGEFIMRV 219

Query: 266 TTSHPRD---MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
              H ++   + D LI+ + D D +  +LHLP+QSG D ILK M R +T  E++ I++  
Sbjct: 220 GMMHAKNAELILDELIEVYKD-DKVGKFLHLPLQSGDDEILKRMKRGYTVDEFKDIVNEF 278

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R    ++  ++D IVGFPGET++ F+ T++++ ++        KYS R GT  + M +QV
Sbjct: 279 RRKIKNLCFTTDIIVGFPGETEEQFQNTLEVLKELKPDYIHGAKYSQRKGTEAAKM-KQV 337

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
           D  ++ +R   L K  RE     N   VG+ + VLI   GK      G +   + V    
Sbjct: 338 DTKIRKQRSEILDKLRRELSYLNNKKYVGKTMRVLILDEGK------GYTDNFKVVKFEG 391

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
               IG+  KV+ITD K   L GE++
Sbjct: 392 GE--IGEFRKVKITDAKTFGLRGEII 415


>gi|221638765|ref|YP_002525027.1| ribosomal protein S12 methylthiotransferase [Rhodobacter
           sphaeroides KD131]
 gi|221159546|gb|ACM00526.1| MiaB-like tRNA modifying enzyme YliG [Rhodobacter sphaeroides
           KD131]
          Length = 455

 Score =  334 bits (856), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 117/448 (26%), Positives = 192/448 (42%), Gaps = 28/448 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
              + S GC   + DS R+     ++GY        AD +++NTC   + A  +    +G
Sbjct: 31  TIGMVSLGCPKALVDSERILTRLRAEGYAISPDYAGADAVIVNTCGFLDSAKAESLEAIG 90

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                         +  V+V GC+  AE + I    P V  V GP  Y ++ + +  A  
Sbjct: 91  EALR---------ENGRVIVTGCLG-AEPDYITGAHPKVLAVTGPHQYEQVLDAVHGA-- 138

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                       D F  L    G     R   ++L I EGC+  C FC++P  RG   SR
Sbjct: 139 -------VPPAPDPFVDLLPATGVRLTPRHF-SYLKISEGCNHTCRFCIIPDMRGRLASR 190

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
               V+ EA KL++ GV E+ ++ Q+ +A+       EK     L   L  +   VRL Y
Sbjct: 191 PERAVLREAEKLVEAGVRELLVISQDTSAYGTDWKGPEKFPILPLARELGRLGAWVRLHY 250

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
              +P      LI    +  +++PYL +P Q     +LK M R   A      I   R  
Sbjct: 251 VYPYPHV--RELIPLMAE-GLVLPYLDIPFQHAHPEVLKRMARPAAAARTLDEIAAWRRD 307

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P+IA+ S FIVG+PGET+ +F+  +D +D+    +   F+Y    G   + + + V   
Sbjct: 308 CPEIALRSTFIVGYPGETEAEFQTLLDWLDEAQLDRVGCFQYENVAGARSNALPDHVAPE 367

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG--KLVGRSPWLQSVVLNSK 443
           VK ER     +K +    +   A VG+ +EV++++  ++    +    +P +   +   +
Sbjct: 368 VKQERWDRFMEKAQAISEAKLAAKVGRRMEVIVDEVDEDGATCRTKADAPEIDGNLFIDE 427

Query: 444 NHN---IGDIIKVRITDVKISTLYGELV 468
                  GDI+ V + +     L+G  V
Sbjct: 428 GFKGLAPGDILTVEVEEAGEYDLWGRPV 455


>gi|206602637|gb|EDZ39118.1| RNA modification enzyme, MiaB family [Leptospirillum sp. Group II
           '5-way CG']
          Length = 483

 Score =  334 bits (856), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 119/445 (26%), Positives = 207/445 (46%), Gaps = 18/445 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +   + S GC  N+ D+  M      +G+  +  +++A++IV+NTC     A ++    L
Sbjct: 35  KTVGIVSLGCPKNLVDTETMIHSLSEKGFRVIPDLEEAEVIVVNTCSFVTDARKESIDTL 94

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             +   K      G   ++V  GC+     EE+    P V++++ P     + ELL    
Sbjct: 95  LEMAQYKE----IGKAKMLVGTGCLVSRYREELPGLLPEVDMLLSPSEETSIGELLSFPE 150

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
               +  T   +       SI            A+L I EGCD  C+FC +P +RG+++S
Sbjct: 151 RKNSLPPTPLIMPS-----SIPFRRKRLTPNHRAYLKISEGCDHTCSFCAIPLSRGLQVS 205

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R+   +++E R + D GV E+TL+ Q++  +     DGE      LL  + +I  +  +R
Sbjct: 206 RTRESLLEEVRMMADEGVREVTLIAQDLTRYGSDLEDGEG--LPRLLEEIDKIGRIPWVR 263

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
              ++P  ++D L+K   D   ++ YL +P Q  S  +LK MNR        ++IDRIR 
Sbjct: 264 LLYAYPTQVTDRLLKVIRDSSTILKYLDIPFQHVSGTVLKRMNRPGNRESTMRLIDRIRR 323

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           + PDI + + FIVGFPGET+++F    + +          F +S   GTP  +M  Q+  
Sbjct: 324 ILPDITLRTTFIVGFPGETEEEFLEIEEFLKWSRLDHVGVFPFSREEGTPSFDMDGQIPA 383

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-----KGKLVGRSPW-LQS- 437
            +K +R   L    +   +      +G+++ VLIE   ++      G+L G +P  +   
Sbjct: 384 RLKTQRRKRLMGVQKAISLEKKKDWLGKVMPVLIEGPSEQSPLILSGRLPGMAPDGIDGE 443

Query: 438 VVLNSKNHNIGDIIKVRITDVKIST 462
           V++ S     G I+  ++  V    
Sbjct: 444 VLVLSGEAASGSIVSCKVKKVHAYD 468


>gi|261416265|ref|YP_003249948.1| MiaB-like tRNA modifying enzyme YliG [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|261372721|gb|ACX75466.1| MiaB-like tRNA modifying enzyme YliG [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|302328140|gb|ADL27341.1| ribosomal protein S12 methylthiotransferase RimO [Fibrobacter
           succinogenes subsp. succinogenes S85]
          Length = 449

 Score =  334 bits (856), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 118/450 (26%), Positives = 209/450 (46%), Gaps = 27/450 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + FV   GC  N  D+  +       G+   ++   AD I++NTC   E A E+      
Sbjct: 19  KVFVVHLGCAKNQVDAENLVGEMLHAGFATCDTAGKADYILVNTCGFIEAAKEES----- 73

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            I  +      +     ++V+GC++   GEE+++  P V+  VG    Y+  ELL++   
Sbjct: 74  -INAILAQAKAKKAKQKLIVSGCLSGRYGEELMKELPEVDYWVGT---YKPGELLKK--- 126

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
               +          E L  ++ G        A+L I EGC++ C +C +P  RG + SR
Sbjct: 127 ----MGIVAPQSCDAENLPRMNLG---GFSHHAYLKIAEGCNRRCAYCAIPLIRGKQDSR 179

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           S+  +V EA+ L   GV EITL+ Q+   + G+    +  T  +LL +L +   +  +R 
Sbjct: 180 SIEDIVAEAKDLEAQGVKEITLIAQDTTYF-GREKGKKGGTLVELLRALLDNTNIPWIRM 238

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
              +P  + D L+        L+ Y+ +P+Q  SD++LK+M R +   E   ++ +IR  
Sbjct: 239 LYWYPMFVDDELLDLMAKEPRLVKYVDMPIQHASDKMLKNMKRNYRKKELVDLLHKIRER 298

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM-LEQVDE 384
            P + + S  +VGFPGET +DF   M+L+  + +     F +SP  GTP   M L  VDE
Sbjct: 299 IPGVTLRSTVLVGFPGETHEDFEELMELLQDVQFDHLGGFVFSPEEGTPVMEMDLPAVDE 358

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWL-----QSV 438
           +    RL  +     E    + +  +G+ ++++I++  +E      GR+          V
Sbjct: 359 SDARARLEAVTDYQEELAAEYAENMIGKTVKIIIDQVAEESEYHFYGRTEGNSMENDDIV 418

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            +   + ++G+     + D +   L  +L+
Sbjct: 419 KVIEGDGDVGEFHNALVVDAEPHELVVKLI 448


>gi|213616133|ref|ZP_03371959.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-2068]
          Length = 316

 Score =  334 bits (856), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 145/315 (46%), Positives = 210/315 (66%), Gaps = 6/315 (1%)

Query: 112 AEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR-VVDTDYSVEDKFERLSIVDGGY 170
            EGE I +R+  V+++ GPQT +RLPE++   R  +  VVD  +   +KF+RL       
Sbjct: 1   QEGEHIRQRAHYVDIIFGPQTLHRLPEMINSVRGDRSPVVDISFPEIEKFDRLP-----E 55

Query: 171 NRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQ 230
            R  G TAF++I EGC+K+CT+CVVPYTRG E+SR    ++ E  +L   GV E+ LLGQ
Sbjct: 56  PRAEGPTAFVSIMEGCNKYCTYCVVPYTRGEEVSRPSDDILFEIAQLAAQGVREVNLLGQ 115

Query: 231 NVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY 290
           NVNAWRG+  DG   TF+DLL  ++ I G+ R+R+TTSHP + +D +I+ + D   L+ +
Sbjct: 116 NVNAWRGENYDGTTGTFADLLRLVAAIDGIDRIRFTTSHPIEFTDDIIEVYRDTPELVSF 175

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
           LHLPVQSGSDR+L  M R HTA EY+ II ++R+ RPDI ISSDFIVGFPGET DDF  T
Sbjct: 176 LHLPVQSGSDRVLNLMGRTHTALEYKAIIRKLRAARPDIQISSDFIVGFPGETTDDFEKT 235

Query: 351 MDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACV 410
           M L+  + +  ++SF +S R GTP ++M++ V E  K +RL  LQ+++ +Q ++++   +
Sbjct: 236 MKLIADVNFDMSYSFIFSARPGTPAADMVDDVPEEEKKQRLYILQERINQQAMAWSRRML 295

Query: 411 GQIIEVLIEKHGKEK 425
           G    +L+E   ++ 
Sbjct: 296 GTTQRILVEGTSRKN 310


>gi|281357420|ref|ZP_06243908.1| MiaB-like tRNA modifying enzyme [Victivallis vadensis ATCC BAA-548]
 gi|281316023|gb|EFB00049.1| MiaB-like tRNA modifying enzyme [Victivallis vadensis ATCC BAA-548]
          Length = 432

 Score =  334 bits (856), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 121/430 (28%), Positives = 214/430 (49%), Gaps = 15/430 (3%)

Query: 25  QRFFV-KSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           +++ +  + GC++N  DS  + D     GY  V S+D  DL+V+N+C +  +AA K    
Sbjct: 2   KKYAILHTLGCRLNSADSALLVDRLEKAGYSVVQSVDSVDLVVVNSCTVTAEAARKSRQA 61

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           + + R             L+VV GC A+ + +  L +    +VV+       + EL+   
Sbjct: 62  VRKFRA-------SYPGALIVVTGCSAELDRDAYL-KDGAASVVLSNPEKRGISELILDY 113

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             G+  +    +  ++  +    +          AFL IQEGC+ FC++C+VPY RG E 
Sbjct: 114 LAGRHELGGKAASLNEPVQAFHEEAISRFPFRSRAFLKIQEGCNNFCSYCIVPYARGPER 173

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SRS  +V+ + R+ +  G  E+ L G N  A+   G D        L+  +  I G  R+
Sbjct: 174 SRSFDEVLADCRQAVAAGYPELVLTGVNTCAYFDAGRD-----LGALVREVCRIDGNFRV 228

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R +++ P   +  L++       +  +LHL +Q+G +RILK+MNR +   +Y +     R
Sbjct: 229 RLSSTEPHPHNIGLLEVMASEPKVCRFLHLALQNGCNRILKAMNRHYRREDYAEFARIAR 288

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              P I + SD I+GFPGET++DF   +  V+++ +A    F YSPR GTP +++  ++ 
Sbjct: 289 EKIPGIHLGSDLILGFPGETEEDFADGLAFVEQMAFANLHIFTYSPRSGTPAASLPGRIP 348

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
             V   R   L++     +  F ++ +GQ++ V+ E  G++ G   G S    +V + + 
Sbjct: 349 PEVAKLRYRKLKEVAEASRRKFVESQLGQVLPVIFETVGRD-GLARGWSDNYLAVRVPAG 407

Query: 444 NHNIGDIIKV 453
           +  +G I+ +
Sbjct: 408 SVELGTIVDI 417


>gi|319789539|ref|YP_004151172.1| MiaB-like tRNA modifying enzyme [Thermovibrio ammonificans HB-1]
 gi|317114041|gb|ADU96531.1| MiaB-like tRNA modifying enzyme [Thermovibrio ammonificans HB-1]
          Length = 441

 Score =  334 bits (856), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 123/447 (27%), Positives = 219/447 (48%), Gaps = 22/447 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +R    + GC+MN +++  +E+ F   GY  V   ++AD+ V+NTC +   A  K    +
Sbjct: 2   KRVAFYTLGCKMNFHETAYLEEQFKGAGYRVVPFEEEADVYVINTCTVTHTADAKSRKAI 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R +             LVVV GC ++   E++  +    +++ G      L EL+E   
Sbjct: 62  RRAKQ-------RNPKALVVVTGCYSEVYPEDV-EKVKEADLITGNVEKQNLVELVEARL 113

Query: 145 FGK--RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            G+  R V      +  F+RL+I     + +    AF+ +Q+GC  FCT+C++P  RG  
Sbjct: 114 RGELPRTVVKGVWRDGTFQRLTI----ESFEGRTRAFVKVQQGCQLFCTYCIIPKARGPM 169

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +S    + + + ++L++ G  EI L G ++ A  G+  +G   + + L+    +I GL R
Sbjct: 170 VSLPPQEALSQIKRLVEAGYKEIVLTGTHLGA-YGREFEG--WSLARLVEEAVKIPGLYR 226

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LR ++  P + +  LI+     + + P+ H+P+QSGS  +L+ M RR+T  +Y ++I+ +
Sbjct: 227 LRLSSVEPVEFTPHLIEVITGSEKVAPHYHVPLQSGSKSVLERMGRRYTPSDYERVIEEL 286

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
              RP+  + +D +VGFPGE++++F  T++ +  +       F YS R GT  + +   V
Sbjct: 287 VKRRPECCVGTDVMVGFPGESEEEFNETLEFIKSLPLGYLHVFPYSRRRGTVAARLRNSV 346

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
               K  R   L++   E+ V F    +G+ +E L+ K        V  +      +LN 
Sbjct: 347 TPQEKRRRGELLREVGTEKSVEFRKRFLGKELEGLVIKQSPYGS--VALTGNYIQTILNG 404

Query: 443 KNHNIGDIIKVRITDV--KISTLYGEL 467
                G  +K  +T V  K    YGE+
Sbjct: 405 -EVPTGSTVKFTLTKVGRKREENYGEV 430


>gi|256811070|ref|YP_003128439.1| MiaB-like tRNA modifying enzyme [Methanocaldococcus fervens AG86]
 gi|256794270|gb|ACV24939.1| MiaB-like tRNA modifying enzyme [Methanocaldococcus fervens AG86]
          Length = 418

 Score =  334 bits (856), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 124/444 (27%), Positives = 220/444 (49%), Gaps = 33/444 (7%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R +V+ YGC +N  D+  +++     G++ V+++++AD++V+NTC +R +   ++   + 
Sbjct: 4   RVYVEGYGCVLNTADTEIIKNSLKEAGFKLVDNLEEADIVVINTCVVRLETENRMIYRIN 63

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            ++NL            VVVAGC+ +A   ++        + + P+  Y+  E+L     
Sbjct: 64  ELKNLGKE---------VVVAGCLPKALKNKVKDF-----LHIYPRESYKAGEILRYYIE 109

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                       ++    ++       K  +   L I EGC   C++C+V   RG  IS 
Sbjct: 110 KH----YRMPYIEEEINKTLYKKLDYLKPSLITPLPICEGCLGNCSYCIVKIARGKLISY 165

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
              ++V++A++LI+ GV  + +  Q+  A  G  +       ++LL  L++I+G   +R 
Sbjct: 166 PREKIVNKAKELINKGVKCLFITAQDT-ACYGFDIGDN---LANLLNDLTQIEGEFIMRV 221

Query: 266 TTSHPRDMSDCLIKAHG--DLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
              H +++   L +       + +  +LHLP+QSG D ILK MNR +T  E+++I+D  R
Sbjct: 222 GMMHAKNVEPILDELIEAYQNEKVGKFLHLPLQSGDDEILKKMNRGYTVDEFKEIVDEFR 281

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
               ++  ++D IVGFPGET++ F+ T++++ ++        KYS R GT  + M +QVD
Sbjct: 282 RKVRNLCFTTDIIVGFPGETEEQFQNTLEVLKELKPDYIHGAKYSQRKGTEAAKM-KQVD 340

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
             ++  R   L K  RE     N   VG+ + VL+   GK      G +   + V     
Sbjct: 341 TKIRKRRSEILDKLRRELSYLNNKKYVGKTMRVLVLDEGK------GYTDNFKVVKFEGG 394

Query: 444 NHNIGDIIKVRITDVKISTLYGEL 467
              IG+  KV+ITD K   L GE+
Sbjct: 395 E--IGEFRKVKITDAKTFGLRGEI 416


>gi|315652513|ref|ZP_07905497.1| Fe-S oxidoreductase [Eubacterium saburreum DSM 3986]
 gi|315485229|gb|EFU75627.1| Fe-S oxidoreductase [Eubacterium saburreum DSM 3986]
          Length = 459

 Score =  334 bits (856), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 126/459 (27%), Positives = 229/459 (49%), Gaps = 41/459 (8%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +     + GC++N Y++  M+ +  + GY  V+  + AD+ ++NTC +   A  K    L
Sbjct: 2   KTVAFHTLGCKVNTYETEAMQQLMEAAGYRCVDFGEKADIYIINTCSVTNIADRKSRQML 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL----PELL 140
            R R       K   D +VV AGC  ++  + I      ++++VG      +     E L
Sbjct: 62  HRAR-------KMNEDAIVVAAGCYVESAKKRIDEDLS-IDIIVGNNNKNEIVNIINEYL 113

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           +     K ++D + S + +   +S ++          AF+ +Q+GC++FC++C++P+TRG
Sbjct: 114 QDKNENKFIIDINKSSDYEEFHISKINDH------TRAFIKVQDGCNQFCSYCIIPFTRG 167

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG------------------ 242
              SR +  +++E +K  D+G  E+ L G +++++    LD                   
Sbjct: 168 RVRSRKMENIIEEVKKFADSGYKEVVLTGIHLSSYGIDFLDESYNKRMEWLTAREESDEE 227

Query: 243 --EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300
             +K    +L+ ++SE+ G+ R+R  +  PR + +  IK+ G++D   P+ HL +QSG D
Sbjct: 228 FVKKNELLNLIENISEVDGIERIRIGSLEPRIIKEDFIKSLGNIDKFCPHFHLSLQSGCD 287

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
           + LKSMNR+++  E+ + ++ IR      AI++D IVGFPGE+  DF  + + ++K+ + 
Sbjct: 288 KTLKSMNRKYSVDEFYKGVEIIRKYFDSPAITTDIIVGFPGESKLDFEESKNFIEKVKFY 347

Query: 361 QAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
           +   F YS R GT  +NM  QVD N KA+R   L +     Q  F    +G+  E+L E+
Sbjct: 348 ETHIFPYSIREGTKAANMP-QVDGNEKAKRANILSEINLVNQREFRKLRLGKADEMLCEE 406

Query: 421 HGKEKG--KLVGRSPWLQSVVLNSKNHNIGDIIKVRITD 457
           +  +       G +     V +        DI++ +I  
Sbjct: 407 NFIKDNIEYYTGYTKEYVKVAVLKGELKANDIVRGKIVK 445


>gi|114766732|ref|ZP_01445670.1| MiaB-like Radical SAM protein [Pelagibaca bermudensis HTCC2601]
 gi|114541051|gb|EAU44107.1| MiaB-like Radical SAM protein [Roseovarius sp. HTCC2601]
          Length = 454

 Score =  334 bits (856), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 116/448 (25%), Positives = 190/448 (42%), Gaps = 29/448 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
              + S GC   + DS R+     ++GY        AD +++NTC   + A  +    +G
Sbjct: 29  TIGMVSLGCPKALVDSERILTRLRAEGYGISPDYAGADAVIVNTCGFLDSAKAESLEAIG 88

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                         +  V+V GC+  AE + I    P V  V GP  Y ++ + +  A  
Sbjct: 89  EA---------LNENGKVIVTGCLG-AEPDYITGAHPKVLAVTGPHQYEQVLDAVHGA-- 136

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                       D F  L +   G        ++L I EGC+  C FC++P  RG   SR
Sbjct: 137 -------VPPAPDPFVDL-LPSSGVKLTPRHYSYLKISEGCNHACKFCIIPDMRGKLASR 188

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLR 264
               V+ EA KL++ GV E+ ++ Q+ +A+     D  EK     L   L  +   VR+ 
Sbjct: 189 PHRAVMREAEKLVEAGVRELLVISQDTSAYGTDWKDRPEKAPIQSLARDLGSLGAWVRMH 248

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           Y   +P       + A G    ++PYL +P Q      L+ M R   A      I   R+
Sbjct: 249 YVYPYPHVREMIPLMAEGG---ILPYLDIPFQHAHPDTLRRMARPAAAARTLDEIAAWRA 305

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           V P+I + S FIVG+PGET+ +F+  +D +D+    +   F+Y    G   + + + V  
Sbjct: 306 VCPEIVLRSTFIVGYPGETEAEFQTLLDWMDEAQLDRVGCFQYENVAGARSNALPDHVPA 365

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE--KHGKEKGKLVGRSPWLQSVVLNS 442
            VK ER     +K +    +   A VG  +EV+++  +      +    +P +   +   
Sbjct: 366 EVKQERWDRFMEKAQAISEAKLAAKVGTRVEVIVDLVEDDAATCRTEADAPEIDGNLFID 425

Query: 443 KNHN---IGDIIKVRITDVKISTLYGEL 467
           + H     GDI+ V + +     L+G L
Sbjct: 426 EGHEALSPGDIVTVEVDEAGEYDLWGRL 453


>gi|91205468|ref|YP_537823.1| MiaB-like tRNA modifying enzyme [Rickettsia bellii RML369-C]
 gi|157827173|ref|YP_001496237.1| MiaB-like tRNA modifying enzyme [Rickettsia bellii OSU 85-389]
 gi|91069012|gb|ABE04734.1| MiaB-like tRNA modifying enzyme [Rickettsia bellii RML369-C]
 gi|157802477|gb|ABV79200.1| MiaB-like tRNA modifying enzyme [Rickettsia bellii OSU 85-389]
          Length = 415

 Score =  334 bits (856), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 119/440 (27%), Positives = 209/440 (47%), Gaps = 32/440 (7%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           + ++GC++N+Y+S  +     + G +        ++ V NTC + + A ++    +   +
Sbjct: 8   IVTFGCRLNIYESEIIRKNLAASGLD--------NVAVFNTCAVTKSAEKQARGAIRAAK 59

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
                  K   DL ++V GC AQ    ++    P V+ V+G +          +    K 
Sbjct: 60  -------KNNPDLKIIVTGCSAQTNP-KMYGDMPEVDKVIGNEEKLLPSHY--QINDEKI 109

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           VV+   SV++    L     G +R     AF+ +Q GCD  CTFC++PY RG   S ++ 
Sbjct: 110 VVNDIMSVKETANHLISSFDGKSR-----AFIQVQNGCDHNCTFCIIPYGRGRNRSIAIG 164

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
            + ++ + L+ NG  E+   G +V A  G  L G       +   L+ +  L RLR ++ 
Sbjct: 165 AIAEQVKHLVLNGFKEVVFTGVDVTA-YGGDLPGSPTFAQMIKRVLNLVPELKRLRLSSI 223

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
              ++ D L +     + +MP+ H+ +Q+G D ILK M RRH   E  +  +++R++RP+
Sbjct: 224 DVAEIDDELFELLAYNERIMPHFHISLQAGDDMILKRMKRRHNRAEIIEFCNKLRAIRPE 283

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           ++  +D I GFP ET + F  T  L+ +        F YS R GTP + M  QV + ++ 
Sbjct: 284 VSFGADIIAGFPTETPEMFENTRKLIAEAELQYLHVFPYSEREGTPAARMP-QVPKAIRK 342

Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIG 448
           ER   L+++ + Q   F    +GQ +E+L+E +          +     V L+ +   IG
Sbjct: 343 ERAEILRQEGQRQLAEFFKKHIGQKVELLVENNN------TAHTENFIPVKLD-EPLEIG 395

Query: 449 DIIKVRITDVKISTLYGELV 468
            I K ++  V+   +   LV
Sbjct: 396 QIFKAKLVGVEDRYMKCVLV 415


>gi|328885447|emb|CCA58686.1| Ribosomal protein S12p methylthiotransferase [Streptomyces
           venezuelae ATCC 10712]
          Length = 497

 Score =  334 bits (856), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 126/492 (25%), Positives = 201/492 (40%), Gaps = 57/492 (11%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +   + + GC  N  DS  +     + G+E V + +DAD+ V+NTC   E A +     L
Sbjct: 5   RTVALVTLGCARNEVDSEELAGRLAADGWELVENAEDADVAVVNTCGFVEAAKKDSVDAL 64

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
               +LK+     G    VV  GC+A+  G+E+    P  + V+G   Y  +   L+   
Sbjct: 65  LEANDLKD----HGRTQAVVAVGCMAERYGKELAEALPEADGVLGFDDYSDISNRLQTIL 120

Query: 145 FGKRVVDTDYSVEDKFERLSIV-------------------------------------D 167
            G  V         K   LS V                                      
Sbjct: 121 SGGSVEAHTPRDRRKLLPLSPVERQEAAAAVALPGHGDAAEAPAEAPADLPEGIAPASGP 180

Query: 168 GGYNRKR---GVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCE 224
               R+R      A + +  GCD+ C+FC +P  RG  +SR  S V++E R L + GV E
Sbjct: 181 RAPLRRRLDTSPVASVKLASGCDRRCSFCAIPSFRGSFVSRRPSDVLNETRWLAEQGVKE 240

Query: 225 ITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL 284
           + L+ +N N   GK L G+      LL  L+ + G+ R+R +   P +M   LI      
Sbjct: 241 VMLVSEN-NTSYGKDL-GDIRLLESLLPELAAVDGIERVRVSYLQPAEMRPGLIDVLTST 298

Query: 285 DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETD 344
           + ++PY  L  Q  +  +L++M R      + +++  IR   P     S+FIVGFPGET+
Sbjct: 299 EKVVPYFDLSFQHSAPDVLRAMRRFGDTDRFLELLASIREKAPTAGARSNFIVGFPGETE 358

Query: 345 DDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVS 404
            DF      +          F YS   GT  +    ++D+ V   RL  L +   E    
Sbjct: 359 ADFAELERFITHARLDAIGVFGYSDEDGTEAAGYEHKLDQEVVDARLAHLSRLAEELTAQ 418

Query: 405 FNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVVL------NSKNHNIGDIIKVR 454
             +  +G+ +EVL+E    E G ++GR    +P     V+       S +   G ++  +
Sbjct: 419 RAEERIGETLEVLVESVDDEDG-VIGRAAHQAPETDGQVVLTTAGGASPDLAPGRMVVAK 477

Query: 455 ITDVKISTLYGE 466
           +   +   L  E
Sbjct: 478 VVGTEGVDLVAE 489


>gi|160890923|ref|ZP_02071926.1| hypothetical protein BACUNI_03368 [Bacteroides uniformis ATCC 8492]
 gi|317479661|ref|ZP_07938785.1| MiaB-like tRNA modifying enzyme [Bacteroides sp. 4_1_36]
 gi|156859922|gb|EDO53353.1| hypothetical protein BACUNI_03368 [Bacteroides uniformis ATCC 8492]
 gi|316904162|gb|EFV25992.1| MiaB-like tRNA modifying enzyme [Bacteroides sp. 4_1_36]
          Length = 438

 Score =  334 bits (856), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 118/437 (27%), Positives = 201/437 (45%), Gaps = 19/437 (4%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N  ++  +  +    G       + AD+ V+NTC + E A +K    + ++   
Sbjct: 16  TLGCKLNFSETSTIGKILREAGVRTARKGEKADICVVNTCSVTEVADKKCRQAIHKL--- 72

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               +K+     VVV GC AQ + E +  +   V+VV+G +    L   L   +  +   
Sbjct: 73  ----VKQHPGAFVVVTGCYAQLKPETVA-KIEGVDVVLGAEQKKDLLHYLGNLQKHE--- 124

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
            T  +     + +       +R      FL +Q+GCD +C++C +P+ RG   + S++ +
Sbjct: 125 -TGEAYTSALKDIRSFAPSCSRGDRTRFFLKVQDGCDYYCSYCTIPFARGRSRNGSIASM 183

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270
           V++A +    G  EI L G N+    G        TF DL+ +L E++G+ R R ++  P
Sbjct: 184 VEQASQAAAEGGKEIVLTGVNI----GDFGKSTGETFFDLVKALDEVEGIERYRISSIEP 239

Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330
             ++D +I+        MP+ H+P+QSGSD +LK M RR+    +   I +I+ V PD  
Sbjct: 240 NLLTDEIIEYVSRSRRFMPHFHIPLQSGSDEVLKLMRRRYDTALFASKIKKIKEVMPDSF 299

Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER 390
           I  D IVG  GET++ F    + +  +   Q   F YS R GT    +   V    K  R
Sbjct: 300 IGVDVIVGTRGETEEYFGQAYEFIKSLDVTQLHVFSYSERPGTQALKIDHVVAPEEKHRR 359

Query: 391 LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDI 450
              L +   E+  +F    +GQ + VL+E+  K    + G +P    V +         +
Sbjct: 360 SQQLLELSDEKTRAFYARHIGQTMPVLLERP-KPGLPMHGFTPNYIRVEVPHDAALDNQL 418

Query: 451 IKVRITD--VKISTLYG 465
           + VR+ D     + L G
Sbjct: 419 VSVRLGDFNADGTALLG 435


>gi|217977076|ref|YP_002361223.1| MiaB-like tRNA modifying enzyme YliG [Methylocella silvestris BL2]
 gi|217502452|gb|ACK49861.1| MiaB-like tRNA modifying enzyme YliG [Methylocella silvestris BL2]
          Length = 457

 Score =  334 bits (856), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 122/477 (25%), Positives = 214/477 (44%), Gaps = 35/477 (7%)

Query: 1   MGLFIKLIGVAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD 60
           M     +I      + +  Q     R    S GC   + DS ++     ++GYE   S D
Sbjct: 1   MASQFMMINPPSSETALTAQGADAPRIAFVSLGCPKALVDSEQIISRLRAEGYELTKSYD 60

Query: 61  DADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRR 120
            A  +++NTC   + A  +    +G  +              ++V GC+  AE E I  R
Sbjct: 61  GAAAVIVNTCGFLDSAKAESLEAIGAAQAANGK---------IIVTGCMG-AEPEGISTR 110

Query: 121 SPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFL 180
            P +  + GPQ +  + + +  A             + KF+ +     G        A+L
Sbjct: 111 FPDLFRITGPQDFDSVMQAVHAA--------APRPHDAKFDLIPA--QGVKLTPRHYAYL 160

Query: 181 TIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW----- 235
            I EGC+  C+FC++P  RG   SR  ++++ EA KL+  GV E+ ++ Q+ +A+     
Sbjct: 161 KISEGCNNRCSFCIIPKLRGDLASRPAAEILREAEKLVAAGVRELLVISQDTSAYGLDLR 220

Query: 236 RGKGLDGE---KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLH 292
             + + G+   K  F DL+  L  +   VRL Y   +P       + A G   +++PYL 
Sbjct: 221 YSESMFGDRVVKAKFIDLIRELGALGVWVRLHYVYPYPHVDEAIELMAQG---LVLPYLD 277

Query: 293 LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352
           +P Q  S  +L++M R     +  + I + R++ P++AI S FIVGFPGETD+DF   +D
Sbjct: 278 IPFQHASKEVLRAMKRPGDQEKTLERIRKWRTICPELAIRSTFIVGFPGETDEDFAILLD 337

Query: 353 LVDKIGYAQAFSFKYSPRLGTPGSNMLEQ-VDENVKAERLLCLQKKLREQQVSFNDACVG 411
            ++     +  +FKY P  G   +++    V   ++  R     ++ +          +G
Sbjct: 338 WLEAAKLDRVGAFKYEPVEGAAANSLGRAFVPAEIQDLRYRRFMERAQTISAKKLKEKIG 397

Query: 412 QIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNSK--NHNIGDIIKVRITDVKISTLYG 465
           + ++V+I+  G+E  G+    +P +   V  +       G+I+ V+I       LYG
Sbjct: 398 RRLQVIIDVGGREAVGRSKADAPEIDGKVFVASRRPLRTGEIVTVKIERANAYDLYG 454


>gi|163787983|ref|ZP_02182429.1| 2-methylthioadenine synthetase [Flavobacteriales bacterium ALC-1]
 gi|159876303|gb|EDP70361.1| 2-methylthioadenine synthetase [Flavobacteriales bacterium ALC-1]
          Length = 406

 Score =  334 bits (856), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 117/432 (27%), Positives = 204/432 (47%), Gaps = 33/432 (7%)

Query: 45  EDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVV 104
                + G + V+  +  +++V+NTC     A E+  + +      K      G    V 
Sbjct: 1   MGQLKASGKDVVHEQEG-NVVVINTCGFINNAKEESVNTILHYMQKKEE----GDVDKVF 55

Query: 105 VAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLS 164
           V GC+++    ++ +  P V+   G      LP LL       + +  DY  E   ERL+
Sbjct: 56  VTGCLSERYKPDLEKEIPNVDQYFGT---TELPGLL-------KALGADYKHELIGERLT 105

Query: 165 IVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCE 224
                Y       A+L I EGCD+ C+FC +P  RG   S  + ++V EA KL  NGV E
Sbjct: 106 TTPKNY-------AYLKIAEGCDRPCSFCAIPLMRGKHKSTPIEEIVIEAEKLAANGVKE 158

Query: 225 ITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL 284
           + L+ Q++  + G  L  +K   ++LL +L +++G+  +R   + P      ++      
Sbjct: 159 LILIAQDLT-YYGLDLY-KKRNLAELLENLVKVEGIDWIRLHYAFPTGFPMDVLDVMNRE 216

Query: 285 DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETD 344
             +  YL +P+Q  SD ILKSM R  T  +  ++++  R+  P++ I +  IVG+PGET 
Sbjct: 217 PKICNYLDIPLQHISDSILKSMRRGTTKEKTTKLLNEFRAKVPEMTIRTTLIVGYPGETQ 276

Query: 345 DDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVS 404
           +DF    D V ++ + +   F YS    T   N+ + V E VK +R   + +   +    
Sbjct: 277 EDFETLRDWVKEMRFERLGCFTYSHEENTHAYNLEDDVPEEVKMQRANEIMEIQSQISWE 336

Query: 405 FNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQS-----VVLNSKN--HNIGDIIKVRITD 457
            N A +GQ  +V+I++  KE    VGR+ +        V +++       G+   +++ +
Sbjct: 337 LNQAKIGQEFKVVIDR--KEGNYFVGRTEYDSPDVDNEVRIDATETYLKTGEFATIKVIE 394

Query: 458 VKISTLYGELVV 469
            +   LYGE+V+
Sbjct: 395 AEDFDLYGEVVL 406


>gi|291559329|emb|CBL38129.1| MiaB-like tRNA modifying enzyme [butyrate-producing bacterium
           SSC/2]
          Length = 440

 Score =  333 bits (855), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 123/433 (28%), Positives = 214/433 (49%), Gaps = 13/433 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +R  + + GC++N Y++  M  M    G   V+  + AD+ ++NTC +   A  K    L
Sbjct: 6   KRAAIVTLGCKVNQYETDAMYGMLKEAGVTMVDPKEAADIYIVNTCSVTNMAERKSRQML 65

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R +       K+  D++VV  GC AQ   EE+  +   +++++G      L  +LE   
Sbjct: 66  HRAK-------KKNPDVVVVAVGCYAQVGKEEL-SKDTNIDLIIGNNKKKDLIHILEEHM 117

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGG-YNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             K        V D               K    A++ +Q+GC++FC++C++PY RG   
Sbjct: 118 GEKESAAESIEVIDIAHDQEYESLHVEQLKEHTRAYIKVQDGCNQFCSYCIIPYARGRVR 177

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR + +V++E   L  +G  E  + G +V ++   G D    T  DLL  +++I  + R+
Sbjct: 178 SRKMEEVLEEITNLTKHGCQEFVITGIHVTSY---GKDLGDVTLIDLLEEIAKIPEVKRI 234

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R  +  P  ++   +     ++   P+ HL +QSG D +LK MNR++T  + R+    IR
Sbjct: 235 RLGSLEPGFITKDTLDRLSKMESFCPHFHLSLQSGCDSVLKRMNRKYTTQDIREKCKAIR 294

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
                 A+++D IVGFPGET+++F  T   +++I   +   FKYS R GT  ++M  Q++
Sbjct: 295 EHFQYPALTTDIIVGFPGETEEEFEETRKFLEEIDLYEMHVFKYSIRKGTKAADMKPQIN 354

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVLNS 442
           + +KA+R   L +  ++ Q  F    +G + EVLIE+    +     G +     V L S
Sbjct: 355 DQIKAKRSNVLLEMSKQHQKEFETKQLGMVKEVLIEEKMHGKDHYYTGHTKEYIKVALYS 414

Query: 443 KNHNIGDIIKVRI 455
           +      I+KV++
Sbjct: 415 EEPLENKIVKVKL 427


>gi|229815354|ref|ZP_04445689.1| hypothetical protein COLINT_02400 [Collinsella intestinalis DSM
           13280]
 gi|229809134|gb|EEP44901.1| hypothetical protein COLINT_02400 [Collinsella intestinalis DSM
           13280]
          Length = 445

 Score =  333 bits (855), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 126/453 (27%), Positives = 209/453 (46%), Gaps = 27/453 (5%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
            ++ + GC  N  D+ RM  +    GY+ V S +DAD +++NTC     A  +       
Sbjct: 7   LYI-TLGCAKNEVDTDRMRALLNGAGYDEVFSAEDADAVIINTCSFLASATSESIETTLT 65

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           +    +  ++      +V+ GCV    G E+    P V   V       +  +++     
Sbjct: 66  LAEEISEGVR---GTRIVMCGCVPSRYGSELPDELPEVAAFVRTDEEDGIVSVMDEVLGI 122

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           +RV                +           A++ I +GCD++C+FC +PY RG   SRS
Sbjct: 123 ERV------------DPPFIPSVKRTVESAVAYVKISDGCDRYCSFCAIPYIRGRYHSRS 170

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD--GEKCTFSDLLYSLSEI--KGLVR 262
              ++ E R L+  GV EI L+GQ+   W     D        + L+ +++E      V 
Sbjct: 171 AESILSEVRDLVAGGVREIVLIGQDTGIWGTDFKDEVDGPTNLAQLMIAVAEAVRPEHVW 230

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R     P  M+D LI A  D   ++PY+ +PVQ  + R+LK+M+R  +A +   +  ++
Sbjct: 231 IRVLYLQPEGMTDELIAAIRDTPEVLPYIDIPVQHCNARVLKAMHRSGSAEQLSDLFAKL 290

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+  P + I +  +VGFPGETDD+    +  +D+ G+     F YS   GT  + M  QV
Sbjct: 291 RAEIPAMVIRTTSLVGFPGETDDEAAEMLAFMDREGFDYTSVFPYSQEEGTFAAKMDGQV 350

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE--KHGKEKGKLVGR----SPWLQ 436
           DE+VK ER             +   A VG++ EV+++  +   E  +L+G     +P   
Sbjct: 351 DEDVKLERTQAAMDLAEALGFAATAAHVGEVAEVIVDGIEETDEGPELIGHAWFQAPDSD 410

Query: 437 S-VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
             V L   +  +GDI++V+ TD     L GE+V
Sbjct: 411 GAVHLEVTDAAVGDILQVKFTDSFCYELVGEVV 443


>gi|167764860|ref|ZP_02436981.1| hypothetical protein BACSTE_03252 [Bacteroides stercoris ATCC
           43183]
 gi|167697529|gb|EDS14108.1| hypothetical protein BACSTE_03252 [Bacteroides stercoris ATCC
           43183]
          Length = 440

 Score =  333 bits (855), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 120/439 (27%), Positives = 203/439 (46%), Gaps = 18/439 (4%)

Query: 17  IVDQCIVPQRFFVK-SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREK 75
           ++D  I   +  V  + GC++N  ++  +  +    G   V   + AD+ V+NTC + E 
Sbjct: 1   MIDTSIFQDKTAVYYTLGCKLNFSETSTIGKVLREAGVRTVRKGEKADICVVNTCSVTEV 60

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135
           A +K    + R+       +K+     VVV GC AQ + + +  +   V+VV+G +    
Sbjct: 61  ADKKCRQAIHRL-------VKQHPGAFVVVTGCYAQLKPDAVA-KIEGVDVVLGAEQKKD 112

Query: 136 LPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
           L + L   R  +       +++D            +R      FL +Q+GCD +C++C +
Sbjct: 113 LLQYLGDLRKHESGEAHTSALKDIRSFAP----SCSRGDRTRFFLKVQDGCDYYCSYCTI 168

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
           P+ RG   + S++ +V++AR+    G  EI L G N+    G        TF DL+ +L 
Sbjct: 169 PFARGRSRNGSIASLVEQARQAAAEGGKEIVLTGVNI----GDFGKSTGETFFDLVKALD 224

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
           +++ + R R ++  P  ++D +I+        MP+ H+P+QSGSD +LK M RR+    +
Sbjct: 225 DVECIERYRISSIEPNLLTDEIIEFVSRSKRFMPHFHIPLQSGSDEVLKLMRRRYDTALF 284

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
              + RI+ V PD  I  D IVG  GET++ F      +  +   Q   F YS R GT  
Sbjct: 285 ASKVKRIKEVMPDAFIGVDVIVGTRGETEEYFEQAYRFIQSLDVTQLHVFSYSERPGTQA 344

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWL 435
             +   V    K  R   L     E+  +F    +GQ + VL+E+  K    + G +P  
Sbjct: 345 LKIEHVVSSEEKHRRSRLLLDLSDEKTRAFYARHIGQTMPVLLER-SKPGTPMHGFTPNY 403

Query: 436 QSVVLNSKNHNIGDIIKVR 454
             V +   +     +I VR
Sbjct: 404 IRVEVPHDDALDNQVIPVR 422


>gi|225849025|ref|YP_002729189.1| hypothetical protein SULAZ_1219 [Sulfurihydrogenibium azorense
           Az-Fu1]
 gi|225643875|gb|ACN98925.1| conserved hypothetical protein [Sulfurihydrogenibium azorense
           Az-Fu1]
          Length = 445

 Score =  333 bits (855), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 114/434 (26%), Positives = 209/434 (48%), Gaps = 15/434 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    + GC+MN +++  +ED F  +GY+  +    AD+ ++NTC +   A       L 
Sbjct: 9   KVAFATLGCRMNQFETSALEDQFSLKGYDITDFESVADIYIVNTCTVTNDADRTSRKTLR 68

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           + +       +   + +VV  GC AQ   +E+  + P +++V+G      + E++E    
Sbjct: 69  QAK-------RRNPNAIVVATGCYAQVSPQELA-KIPEIDLVIGNSHKTAVLEIVENY-I 119

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            ++  +  +      E             G    L +QEGC+ FC+FC++P+ RG   S 
Sbjct: 120 NEKFENKVFIDNIFRENDFKTFFISTFYEGSRPILKVQEGCNSFCSFCIIPFARGKVRSA 179

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            +  +V++ + L+D G  EI L G  ++ +   G D ++    DLL  L  ++GL R+R 
Sbjct: 180 KIQDIVNQVKFLVDKGYKEIVLTGTQLSQF---GYDHKEGYLLDLLKQLVNVEGLYRIRL 236

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
           ++    ++ D LI      + + P+ HL +QS  DR+LK M R ++  +Y + +++I   
Sbjct: 237 SSMGINELDDYLIDFLTTQEKIAPHFHLSIQSADDRVLKDMKRNYSVKQYVEKVEKILKN 296

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
           RPD AI +D I GFP E +  F+ T+  V++I +A    F YS R  T      ++V   
Sbjct: 297 RPDTAIGTDIITGFPTEDETAFKNTVKNVEEIPFAYIHVFTYSMRDNTSAVKFGDRVSPQ 356

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445
           VK ER   L++    + + F    +G+ +E LI    +++   +G +       + +   
Sbjct: 357 VKKERTKILREIGERKSIDFRKKFLGKDMEFLI--ITEKEDYKIGLTGNYIHAKIKTDQP 414

Query: 446 NIGDIIKVRITDVK 459
               I+K ++T V 
Sbjct: 415 L-NSIVKSKLTKVG 427


>gi|254497963|ref|ZP_05110727.1| Fe-S oxidoreductase [Legionella drancourtii LLAP12]
 gi|254352857|gb|EET11628.1| Fe-S oxidoreductase [Legionella drancourtii LLAP12]
          Length = 435

 Score =  333 bits (855), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 133/459 (28%), Positives = 204/459 (44%), Gaps = 41/459 (8%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           +  +    S GC   + DS R+     +QGYE V+S  DA ++V+NTC   + A ++   
Sbjct: 1   MNHKVGFVSLGCPKALVDSERIITQLRAQGYELVSSYQDAGVVVINTCGFIDSAVKESLD 60

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +      K +  + G    V+V GC+  A+ + I    P V  V G   Y  +   +  
Sbjct: 61  TI------KEAMAENGR---VIVTGCLG-AKADVIKEACPDVLHVSGAHAYEEVVNAVHE 110

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
                          D F +L    G     R   A+L I EGC++ CTFC++P  RG  
Sbjct: 111 HLP---------PPADPFMQLVPPQGIKLTPRHY-AYLKISEGCNQKCTFCIIPTMRGKL 160

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK---------CTFSDLLYS 253
            S  L QV+ EA+KL + GV EI ++ Q+ +A  G     +            F DL   
Sbjct: 161 QSYPLVQVLSEAKKLKEAGVNEILVISQDTSA-YGVDTRYQPVTWQGKTVNTRFYDLCEQ 219

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
           L E+   VRL Y   +P       +       +++PYL +P+Q  S R+LK+M R  ++ 
Sbjct: 220 LGELGIWVRLHYVYPYPHVDEIIPLM---RDGLILPYLDIPLQHASSRVLKAMKRPASSE 276

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
                I   R V PDI + S FIVGFPGET+++F   +D + +    +   FKYSP  G 
Sbjct: 277 NTLMRIAAWREVCPDITLRSTFIVGFPGETEEEFEELLDFLAEAQLDRVGCFKYSPVEGA 336

Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS- 432
             +++   V E VK ER     +   E   +     +G    VLI++   E  +++ RS 
Sbjct: 337 KANDLANPVPEEVKEERYHRFMQLQAEISRTKLQNKIGTTQTVLIDEITPE--QIIARSK 394

Query: 433 ---PWLQSVVL--NSKNHNIGDIIKVRITDVKISTLYGE 466
              P +  +V+   +    IG    V I D     L+ E
Sbjct: 395 SDAPEIDGLVILPPTPGIKIGSFANVTIIDSDDYDLFAE 433


>gi|86359534|ref|YP_471426.1| hypothetical protein RHE_CH03954 [Rhizobium etli CFN 42]
 gi|86283636|gb|ABC92699.1| hypothetical conserved protein [Rhizobium etli CFN 42]
          Length = 423

 Score =  333 bits (855), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 124/441 (28%), Positives = 200/441 (45%), Gaps = 38/441 (8%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V ++GC++N Y+S  M+      G          + +++NTC +  +A  +    +    
Sbjct: 6   VITFGCRLNTYESEVMKAQAEKAGLN--------NAVLVNTCAVTGEAVRQARQAI---- 53

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT------YYRLPELLER 142
                  ++     ++V GC AQ E E     +  V+ V+G +       Y  LP+    
Sbjct: 54  ---RRARRDNPHARIIVTGCAAQTEKETFAAMA-EVDAVLGNEEKLSSASYRSLPDFGVS 109

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           A    RV D         + +  +DG       V AF+ +Q GCD  CTFC++PY RG  
Sbjct: 110 AEEKLRVNDIMSVKTTAPQMIRHIDGH------VRAFIQVQSGCDHRCTFCIIPYGRGNS 163

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            S  +  VVD+AR+L D+G  EI L G +  +  G  L G           L +I  + R
Sbjct: 164 RSVPMGAVVDQARRLADSGYREIVLTGVDATS-YGSDLPGTPTLGLLAKTLLKQIPDIRR 222

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LR ++    +    L+    +    MP+LHL +Q G D ILK M RRH+  +  + I+ +
Sbjct: 223 LRLSSIDSIEADAHLMDLIAEEPRFMPHLHLSLQHGDDMILKRMKRRHSRADALRFIEDV 282

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R +RP+++  +D I GFP ET++ F   + L ++ G A    F YSPR GTP + M  Q+
Sbjct: 283 RRLRPEMSFGADMIAGFPTETEEMFANAVRLAEEAGIAHLHVFPYSPRPGTPAARMP-QL 341

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
           D ++  +R   L+        S  D  VG    +L+E +G      +  +     V   +
Sbjct: 342 DRSLVKDRAARLRDTGHRLHQSHLDGMVGTRQWLLVENNG------LAHTENFTLV--AA 393

Query: 443 KNHNIGDIIKVRITDVKISTL 463
            +   G+++ V IT      L
Sbjct: 394 ADLRPGELVPVTITGHNGKHL 414


>gi|15669058|ref|NP_247862.1| hypothetical protein MJ_0867 [Methanocaldococcus jannaschii DSM
           2661]
 gi|2501543|sp|Q58277|Y867_METJA RecName: Full=Putative methylthiotransferase MJ0867
 gi|1591550|gb|AAB98872.1| conserved hypothetical protein [Methanocaldococcus jannaschii DSM
           2661]
          Length = 427

 Score =  333 bits (855), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 125/452 (27%), Positives = 226/452 (50%), Gaps = 33/452 (7%)

Query: 20  QCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEK 79
           Q ++  R +V+ YGC +N  D+  +++     G+E VN++++AD+ ++NTC +R +   +
Sbjct: 7   QVVMDMRVYVEGYGCVLNTADTEIIKNSLKKHGFEVVNNLEEADIAIINTCVVRLETENR 66

Query: 80  VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL 139
           +   +  ++NL            VVVAGC+ +A   ++        + + P+  ++  E+
Sbjct: 67  MIYRINELKNLGKE---------VVVAGCLPKALKNKVKGF-----LHIYPREAHKAGEI 112

Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           L+   + ++     Y  ED  + L         K  +   L I EGC   C++C+V   R
Sbjct: 113 LKN--YVEKHYRMPYIEEDINKTL--YKKLDYLKPSLITPLPICEGCIGNCSYCIVKIAR 168

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G  IS    ++V++A++LI+ G   + +  Q+  A  G  +       ++LL  L++IKG
Sbjct: 169 GGLISYPREKIVNKAKELINKGAKCLLITAQDT-ACYGFDIGDN---LANLLNELTQIKG 224

Query: 260 LVRLRYTTSHPRDMSDCLIKAHG--DLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
              +R    H ++    L +       + +  +LHLP+QSG D ILK M R +T  E++ 
Sbjct: 225 EFIMRVGMMHAKNAELILDELIEVYQNEKVGKFLHLPLQSGDDEILKRMKRGYTVDEFKD 284

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
           I++  R    ++  ++D IVGFPGET++ F+ T++++ ++        KYS R GT  + 
Sbjct: 285 IVNEFRRKIKNLCFTTDIIVGFPGETEEQFQNTLEVLRELKPDYIHGAKYSQRKGTEAAK 344

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQS 437
           M +Q+D  ++  R   L K  RE     N   +G+ ++VL+   GK      G +   + 
Sbjct: 345 M-KQIDTKIRKRRSEILDKLRRELSYLNNKKYIGKAMKVLVLDEGK------GYTDNFKV 397

Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
           V        +G+  KV+ITD K   L GEL++
Sbjct: 398 VKFEGGE--VGEFRKVKITDAKTFGLKGELIL 427


>gi|146277094|ref|YP_001167253.1| ribosomal protein S12 methylthiotransferase [Rhodobacter
           sphaeroides ATCC 17025]
 gi|145555335|gb|ABP69948.1| MiaB-like tRNA modifying enzyme YliG [Rhodobacter sphaeroides ATCC
           17025]
          Length = 463

 Score =  333 bits (855), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 114/449 (25%), Positives = 194/449 (43%), Gaps = 28/449 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
              + S GC   + DS R+     ++GY        AD +++NTC   + A  +    +G
Sbjct: 37  TIGMVSLGCPKALVDSERILTRLRAEGYAISPDYAGADAVIVNTCGFLDSAKAESLEAIG 96

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                         +  V+V GC+  AE + I    P V  V GP  Y ++ + +  A  
Sbjct: 97  EALR---------ENGRVIVTGCLG-AEPDYITGAHPKVLAVTGPHQYEQVLDAVHGA-- 144

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                       D F  L    G     R   ++L I EGC+  C FC++P  RG  +SR
Sbjct: 145 -------VPPAPDPFVDLLPATGVRLTPRHF-SYLKISEGCNHSCRFCIIPDMRGRLVSR 196

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
               V+ EA KL++ GV E+ ++ Q+ +A+        +     L   L ++   VRL Y
Sbjct: 197 PERAVLREAEKLVEAGVRELLVISQDTSAYGTDWKGPVRFPILPLARELGQLGAWVRLHY 256

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
              +P      LI    +  +++PYL +P Q     +LK M R   A      I   R  
Sbjct: 257 VYPYPHV--RELIPLMAE-GLILPYLDIPFQHAHPEVLKRMARPAAAARTLDEIAAWRRD 313

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            PDI + S FIVG+PGET+++F+  +D +D+    +   F+Y    G   + + + V   
Sbjct: 314 CPDITLRSTFIVGYPGETEEEFQTLLDWLDEAQLDRVGCFQYENVAGARSNALPDHVAPE 373

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG--KLVGRSPWLQSVVLNSK 443
           +K ER     +K +    +   A +GQ +EV++++   E    +    +P +   +   +
Sbjct: 374 LKQERWERFMQKAQAISEAKLAARIGQRLEVIVDEVDGEGATCRTKADAPEIDGNLFIDE 433

Query: 444 N---HNIGDIIKVRITDVKISTLYGELVV 469
                + GD++ V + +     L+G  V+
Sbjct: 434 GFEALSPGDLLTVEVEEAGEYDLWGRAVL 462


>gi|228967379|ref|ZP_04128413.1| hypothetical protein bthur0004_41810 [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228792305|gb|EEM39873.1| hypothetical protein bthur0004_41810 [Bacillus thuringiensis
           serovar sotto str. T04001]
          Length = 386

 Score =  333 bits (855), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 119/380 (31%), Positives = 208/380 (54%), Gaps = 14/380 (3%)

Query: 95  IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDY 154
           +++  D ++ V GC AQ    EI+   P V++VVG Q   ++   +E  R  ++ ++   
Sbjct: 1   MRQNPDAVICVTGCYAQTSPAEIMA-IPGVDIVVGTQDREKMLGYIEEFRKERQPINVVR 59

Query: 155 SVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVD 212
           ++     +E L +            A L IQEGC+ FCTFC++P+ RG+  SR   +V+ 
Sbjct: 60  NIMKTRVYEELDVP----YFTDRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIK 115

Query: 213 EARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKGLVRLRYTTSHPR 271
           +A++L+D G  EI L G +     G G D +    + LL  + +E+ GL RLR ++    
Sbjct: 116 QAQQLVDAGYKEIVLTGIHTG---GYGEDIKDYNLAGLLRDMEAEVGGLKRLRISSIEAS 172

Query: 272 DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAI 331
            +SD +I+     +V++ +LH+P+QSGS+ +LK M R++T   +++ +DR++   P +AI
Sbjct: 173 QISDEVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAI 232

Query: 332 SSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERL 391
           +SD IVGFPGET+++F  T + + +  +++   F YS R GTP + M +QV E+VK +R+
Sbjct: 233 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVKNDRV 292

Query: 392 LCLQKKLREQQVSFNDACVGQIIEVLIEK---HGKEKGKLVGRSPWLQSVVLNSKNHNIG 448
             L +   +    +  A  G+++E++ E+    G  +G  VG +     +V       IG
Sbjct: 293 HRLIELSNQLAKEYASAFEGEVLEIIPEEQFKDGDREGLYVGYTDNYLKIVFEGSEELIG 352

Query: 449 DIIKVRITDVKISTLYGELV 468
            ++KV+IT         + V
Sbjct: 353 KLVKVKITKAGYPYNEAQFV 372


>gi|238066634|sp|A4WRD4|RIMO_RHOS5 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
          Length = 457

 Score =  333 bits (855), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 114/449 (25%), Positives = 194/449 (43%), Gaps = 28/449 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
              + S GC   + DS R+     ++GY        AD +++NTC   + A  +    +G
Sbjct: 31  TIGMVSLGCPKALVDSERILTRLRAEGYAISPDYAGADAVIVNTCGFLDSAKAESLEAIG 90

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                         +  V+V GC+  AE + I    P V  V GP  Y ++ + +  A  
Sbjct: 91  EALR---------ENGRVIVTGCLG-AEPDYITGAHPKVLAVTGPHQYEQVLDAVHGA-- 138

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                       D F  L    G     R   ++L I EGC+  C FC++P  RG  +SR
Sbjct: 139 -------VPPAPDPFVDLLPATGVRLTPRHF-SYLKISEGCNHSCRFCIIPDMRGRLVSR 190

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
               V+ EA KL++ GV E+ ++ Q+ +A+        +     L   L ++   VRL Y
Sbjct: 191 PERAVLREAEKLVEAGVRELLVISQDTSAYGTDWKGPVRFPILPLARELGQLGAWVRLHY 250

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
              +P      LI    +  +++PYL +P Q     +LK M R   A      I   R  
Sbjct: 251 VYPYPHV--RELIPLMAE-GLILPYLDIPFQHAHPEVLKRMARPAAAARTLDEIAAWRRD 307

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            PDI + S FIVG+PGET+++F+  +D +D+    +   F+Y    G   + + + V   
Sbjct: 308 CPDITLRSTFIVGYPGETEEEFQTLLDWLDEAQLDRVGCFQYENVAGARSNALPDHVAPE 367

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG--KLVGRSPWLQSVVLNSK 443
           +K ER     +K +    +   A +GQ +EV++++   E    +    +P +   +   +
Sbjct: 368 LKQERWERFMQKAQAISEAKLAARIGQRLEVIVDEVDGEGATCRTKADAPEIDGNLFIDE 427

Query: 444 N---HNIGDIIKVRITDVKISTLYGELVV 469
                + GD++ V + +     L+G  V+
Sbjct: 428 GFEALSPGDLLTVEVEEAGEYDLWGRAVL 456


>gi|223985672|ref|ZP_03635720.1| hypothetical protein HOLDEFILI_03026 [Holdemania filiformis DSM
           12042]
 gi|223962363|gb|EEF66827.1| hypothetical protein HOLDEFILI_03026 [Holdemania filiformis DSM
           12042]
          Length = 439

 Score =  333 bits (854), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 116/420 (27%), Positives = 212/420 (50%), Gaps = 22/420 (5%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
             + + GC++N Y+S         +GY+ V+  + AD+ ++ TC +   AA K    + +
Sbjct: 10  VAISTLGCKVNAYESESTAQALRQRGYQTVDFKEKADVYIIFTCAVTNTAASKSRQKIHQ 69

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
            R       ++  D LV   GC  Q + +++  +   ++++VG     +LP+L++ A   
Sbjct: 70  AR-------RQNPDALVCAVGCYVQIQADQMAEQ-EKIDILVGSSGKDKLPQLIDEALRQ 121

Query: 147 KR---VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           +R   V   D     +FE L + +  +  +    A+L +Q+GC++FC +C++PY RG E 
Sbjct: 122 RREPIVELHDVRTSAEFEMLPLDEFEHQTR----AYLKVQDGCNQFCAYCIIPYARGRER 177

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           S  L + + EAR+ +     EI L G +     GK  D    +  DL+  + EI+ L R+
Sbjct: 178 SLPLDEALKEARR-LAQKHKEIVLAGIHTG-RYGKDRD---TSLCDLIRGMCEIEPLERI 232

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R ++    +++D L+        +  +LH+P+Q+G D  LK M R +T  ++   ++ IR
Sbjct: 233 RISSIEITEITDELLTLMETQPKIARHLHIPLQAGCDATLKRMGRPYTTAQFMARVEEIR 292

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           +    I+IS+D IVGFP E++ +F ATM  + +I ++    F +SP+ GTP   M  Q+ 
Sbjct: 293 TRIDGISISTDLIVGFPQESEAEFAATMAFLKQIQFSFIHVFPFSPKTGTPAQRMSGQIS 352

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
             VK +R   + +  R    +   + +G+ ++V+IE      G   G S     V ++ +
Sbjct: 353 SEVKKQRARQVGEFSRNSYYAVKSSWIGKDVDVIIETCV--NGVAFGHSSEYLPVQIDGE 410


>gi|198276872|ref|ZP_03209403.1| hypothetical protein BACPLE_03077 [Bacteroides plebeius DSM 17135]
 gi|198270397|gb|EDY94667.1| hypothetical protein BACPLE_03077 [Bacteroides plebeius DSM 17135]
          Length = 438

 Score =  333 bits (854), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 123/458 (26%), Positives = 206/458 (44%), Gaps = 26/458 (5%)

Query: 17  IVDQCIVPQRFFVK-SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREK 75
           ++D  I   +  V  + GC++N  ++  +       G       + AD+ V+NTC + E 
Sbjct: 1   MIDTTIFQDKVAVYYTLGCKLNFAETSSIGKTLKEAGVRTARKGEKADICVINTCSVTEM 60

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135
           A +K    + R+        ++  D  +VV GC AQ +  ++      V++V+G +    
Sbjct: 61  ADKKCRQAIHRL-------SRQHPDAFIVVTGCYAQLKPGQVAD-IEGVDLVLGAEQKGE 112

Query: 136 LPELL---ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTF 192
           L   L   ++   G+ VV          + +       +R      FL +Q+GCD FC++
Sbjct: 113 LMNYLGNLQKHTHGEAVVTA-------TKDIRTFSPSCSRGDRTRYFLKVQDGCDYFCSY 165

Query: 193 CVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLY 252
           C +P+ RG   +  +  +V +AR+    G  EI L G N+    G        TF DL+ 
Sbjct: 166 CTIPFARGRSRNGKIEDLVTQARQAAAEGGKEIVLTGVNI----GDFGKSTGETFFDLVK 221

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
           +L E++G+ R R ++  P  ++D +I+        MP+ H+P+QSG D +LK M RR+  
Sbjct: 222 ALDEVEGIERYRISSIEPNLLTDEIIEYVAQSRRFMPHFHIPLQSGCDEVLKLMRRRYDT 281

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
             +   I +I+S+ PD  I  D IVG  GET + F    + +  +   Q   F YS R G
Sbjct: 282 ALFAAKIAKIKSLMPDAFIGVDVIVGTRGETPEYFEKAYEFIKGLDVTQLHVFSYSERPG 341

Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS 432
           T    +   V    K  R   L +   E+  +F    +G   EVL+EK  K    + G +
Sbjct: 342 TQALKIDYVVPAQEKHARSQRLLELSDEKTKAFYARHIGAEAEVLMEK-SKAGTPMHGFT 400

Query: 433 PWLQSVVLNSKNHNIGDIIKVRITDV--KISTLYGELV 468
                V L         ++KVR+ D     ++L G ++
Sbjct: 401 KNYIRVELVHDEKLDNHLVKVRLGDFNEDGTSLKGTIL 438


>gi|4104517|gb|AAD02057.1| unknown [Clostridium acetobutylicum DSM 1731]
          Length = 386

 Score =  333 bits (854), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 123/398 (30%), Positives = 211/398 (53%), Gaps = 16/398 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    + GC++N Y+S  M + F   G+E V++ + AD  V+NTC +      K    + 
Sbjct: 2   KVAFITLGCRVNSYESEAMAEKFIKSGWEIVDNDEKADAYVINTCTVTNMGDRKSRQMIS 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER--A 143
           R R       K   D ++   GC +Q E E++      V++V+G +    +   + +   
Sbjct: 62  RAR-------KANKDAVIAAVGCYSQVEPEKVA-EIEGVDIVLGTKNKGDIIHYVNKFIE 113

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
              + V   D   + KFE L+I +     +    AFL IQ+GC++FC++C++PY RG   
Sbjct: 114 ERNQIVNVKDVFTDKKFEDLNIDEY----QDKTRAFLKIQDGCNRFCSYCLIPYARGGVC 169

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           S++  +V+ E ++L ++G  EI L G ++ A  G  L G+      ++    +I G+ R+
Sbjct: 170 SKNPEKVIGEIKRLAEHGFKEIILSGIHI-ASYGDDLKGD-WNLISIIEKAEQIDGIERI 227

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R  +  PR   +  I    ++  + P+ HL +QSG    L+ MNR++TA EY++I+ ++R
Sbjct: 228 RIGSIEPRFFDEDTISKIKNMKKMCPHFHLSLQSGCTETLERMNRKYTAEEYKEIVYKLR 287

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
               D++I++D IVGFPGETD++F  T D + +I  A+   FKYSPR GT  + M  Q++
Sbjct: 288 ENISDVSITTDVIVGFPGETDEEFEKTYDFLKEIELAKMHVFKYSPREGTKAAAMKNQIN 347

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKH 421
            NVK +R   L +  +  +  F    + + ++VL EK 
Sbjct: 348 GNVKDKRSAELIELDKINEKKFMSKFLDREMDVLFEKK 385


>gi|239947306|ref|ZP_04699059.1| conserved hypothetical protein [Rickettsia endosymbiont of Ixodes
           scapularis]
 gi|239921582|gb|EER21606.1| conserved hypothetical protein [Rickettsia endosymbiont of Ixodes
           scapularis]
          Length = 423

 Score =  333 bits (854), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 117/436 (26%), Positives = 207/436 (47%), Gaps = 32/436 (7%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V ++GC++N+Y+S  +       G +        ++ + NTC + + A ++    + + +
Sbjct: 14  VVTFGCRLNIYESEIIRKNLELSGID--------NVAIFNTCAVTKAAEKQARQAICKAK 65

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
                  K   DL ++V GC AQ    ++    P V+ V+G +          +    K 
Sbjct: 66  -------KNNPDLKIIVTGCSAQTSP-QMYGNMPEVDKVIGNEEKLLPNYY--QITDEKI 115

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
            V+   SV++    L     G +R     AF+ +Q GCD FCTFC++PY RG   S ++ 
Sbjct: 116 TVNDIMSVKETASHLVSSFDGKSR-----AFIQVQNGCDHFCTFCIIPYGRGKSRSVAIG 170

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
            + ++ + L+ NG  E+   G +V A  G  L G       +   L+ +  L RLR ++ 
Sbjct: 171 AIAEQVKHLVLNGFKEVVFTGVDVTA-YGSDLPGSPTFAQMIKRVLNLVPELKRLRLSSI 229

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
              ++ D L +     + +MP+ H+ +Q+G D ILK M RRH      +   ++R++RP+
Sbjct: 230 DVAEIDDELFELIAYSERIMPHFHISLQAGDDMILKRMKRRHNRANVIEFCRKLRAIRPE 289

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           ++  +D I GFP ET + F  T  L+ +        F YS R GTP + M  QV +N++ 
Sbjct: 290 VSFGADIIAGFPTETPEMFENTRKLISEAELQYLHVFPYSEREGTPAARMP-QVPKNIRK 348

Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIG 448
           ER   L+++ + Q   F    +GQ +E+L+E +       +  +     V L+ K   IG
Sbjct: 349 ERAEILRQEGQNQLTEFFKKHIGQKVELLVENNN------IAHTENFIPVKLD-KPLEIG 401

Query: 449 DIIKVRITDVKISTLY 464
            I K ++  ++   + 
Sbjct: 402 QIFKAKLVGIEEGYMR 417


>gi|157825701|ref|YP_001493421.1| MiaB-like tRNA modifying enzyme [Rickettsia akari str. Hartford]
 gi|157799659|gb|ABV74913.1| MiaB-like tRNA modifying enzyme [Rickettsia akari str. Hartford]
          Length = 416

 Score =  333 bits (854), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 116/440 (26%), Positives = 209/440 (47%), Gaps = 32/440 (7%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V ++GC++N+Y+S  +       G +        ++ + NTC + + A ++    + + +
Sbjct: 9   VITFGCRLNIYESEIIRKNLALSGID--------NVAIFNTCAVTKAAEKQARQAIRKAK 60

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
                  K   +L ++V GC AQ    ++    P V+ V+G +          +    K 
Sbjct: 61  -------KNNPNLKIIVTGCSAQTSP-QMYGNMPEVDKVIGNEEKLLHNYY--QITDEKI 110

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
            V+   SV++    L     G +R     AF+ +Q GCD FCTFC++PY RG   S  + 
Sbjct: 111 AVNDIMSVKETVGHLVSSFDGKSR-----AFIQVQNGCDHFCTFCIIPYGRGKSRSVPIG 165

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
            + ++ + L+ NG  E+   G +V A  G  L G       +   L+ +  L RLR ++ 
Sbjct: 166 AIAEQVKYLVLNGFKEVVFTGVDVTA-YGSDLPGSPTFAQMIKRVLNLVPELKRLRLSSI 224

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
              ++ D L +     + +MP+ H+ +Q+G + ILK M RRHT  +  +   ++R++RP+
Sbjct: 225 DVAEIDDELFELIAYSERIMPHFHISLQAGDEMILKRMKRRHTRAKVIEFCRKLRAIRPE 284

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           ++  +D I GFP ET + F  T  L+ +        F YS R GTP + M  QV + ++ 
Sbjct: 285 VSFGADIIAGFPTETPEMFDNTRKLISEAALQYLHVFPYSEREGTPAARMP-QVPKTIRK 343

Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIG 448
           ER   L+++ + Q   F    +GQ +E+L+E +       +  +     V L++    IG
Sbjct: 344 ERAEILRQEGQNQLSEFFKKHIGQKVELLVENNN------IAHTENFIPVKLDT-PLEIG 396

Query: 449 DIIKVRITDVKISTLYGELV 468
            I K ++  ++   +   LV
Sbjct: 397 QIFKAKLIGIEEGYMKCVLV 416


>gi|195027257|ref|XP_001986500.1| GH20489 [Drosophila grimshawi]
 gi|193902500|gb|EDW01367.1| GH20489 [Drosophila grimshawi]
          Length = 554

 Score =  333 bits (854), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 128/461 (27%), Positives = 221/461 (47%), Gaps = 26/461 (5%)

Query: 14  VSQIVDQCIVP--QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCH 71
             +I+ + ++P  Q+ +VK++GC  N  DS  M     S GY+     ++ADL +LN+C 
Sbjct: 60  PQKIIHESVIPGTQKVYVKTWGCAHNNSDSEYMAGQLASFGYKLSGK-NEADLWLLNSCT 118

Query: 72  IREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ 131
           ++  + +   + +        + ++ G    VVVAGCV Q   +    R      V+G Q
Sbjct: 119 VKNPSEDTFRNEI-------EAGMRNGKH--VVVAGCVPQGAPKSDYLRG---LSVIGVQ 166

Query: 132 TYYRLPELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190
              R+ E++E    G  V +  +  V  +    + +     RK  +   ++I  GC   C
Sbjct: 167 QIDRVVEVVEETLKGHSVRLLQNKKVHGRRVAGAPLSLPKVRKNPLIEIISINSGCLNQC 226

Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDL 250
           T+C   + RG   S   +++VD AR+  D G CEI L  ++  A  G+ +     +  +L
Sbjct: 227 TYCKTKHARGDLASYPPAEIVDRARQSFDEGCCEIWLTSEDTGA-YGRDI---GSSLPEL 282

Query: 251 LYSLSE-IKGLVRLRYTTSHPRDMSDCLIKAHG--DLDVLMPYLHLPVQSGSDRILKSMN 307
           L+ L E I     LR   ++P  + + L +         +  +LH+PVQSGSD +L  M 
Sbjct: 283 LWQLVEVIPEHCMLRVGMTNPPYILEHLEEVAKVLQHPRVYAFLHVPVQSGSDSVLGEMK 342

Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           R +   ++  ++D +RS  P + I++D I GFP ET+ DF  TM L +K  +   F  ++
Sbjct: 343 REYCRKDFEHVVDFLRSRVPGLTIATDIICGFPTETEQDFEETMTLCEKYQFPSLFINQF 402

Query: 368 SPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK 427
            PR GTP + M E++  N+  +R   L                GQ+  VL+ +   +K  
Sbjct: 403 FPRPGTPAAKM-ERIPANLVKKRTKRLTDLFY--SYEPYAGREGQLYTVLVTEISHDKLH 459

Query: 428 LVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            VG +   + V+L  + + +G  ++VRIT     ++ GE++
Sbjct: 460 YVGHNKSYEQVLLPMRKNLLGTRVRVRITSSSKFSMMGEIL 500


>gi|291448192|ref|ZP_06587582.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
           15998]
 gi|291351139|gb|EFE78043.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
           15998]
          Length = 493

 Score =  333 bits (854), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 127/486 (26%), Positives = 205/486 (42%), Gaps = 50/486 (10%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +   + + GC  N  DS  +     + G++ V    DAD+ V+NTC   E A +     L
Sbjct: 5   RTVALVTLGCARNEVDSEELAGRLAADGWDLVEDASDADVAVVNTCGFVEAAKKDSVDAL 64

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER-- 142
               +LK+     G    VV  GC+A+  G+++    P  + V+G   Y  + + L+   
Sbjct: 65  LEANDLKD----HGRTQAVVAVGCMAERYGKDLAEALPEADGVLGFDDYADISDRLQTIL 120

Query: 143 -----------------------------ARFGKRVVDTDYSVEDKFERLSIVDGGYNRK 173
                                        A  G        + ED  E ++ V G     
Sbjct: 121 NGGIHASHTPRDRRKLLPISPAERQDAAVALPGHAQETPAPAPEDLPEGVAPVSGPRAPL 180

Query: 174 RG-----VTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLL 228
           R        A + +  GCD+ C+FC +P  RG  ISR  S V+ E R L + GV E+ L+
Sbjct: 181 RRRLGTSPVASVKLASGCDRRCSFCAIPSFRGSFISRRPSDVLQETRWLAEQGVKEVMLV 240

Query: 229 GQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLM 288
            +N N   GK L G+      LL  L+++ G+ R+R +   P +M   LI        + 
Sbjct: 241 SEN-NTSYGKDL-GDIRLLETLLPELADVDGIERIRVSYLQPAEMRPGLIDVLTSTPKVA 298

Query: 289 PYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFR 348
           PY  L  Q  S  +L++M R      + +++D IRS  P     S+FIVGFPGET+ D  
Sbjct: 299 PYFDLSFQHSSPSVLRTMRRFGDTDRFLELLDTIRSKAPQAGARSNFIVGFPGETEADLA 358

Query: 349 ATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDA 408
                +          F YS   GT       ++D +V AERL  + +   E      + 
Sbjct: 359 ELERFLTGARLDAIGVFGYSDEEGTEAVGYENKLDADVIAERLAHISQLAEELTSQRAEE 418

Query: 409 CVGQIIEVLIEK-HGKEKGKL-VGR----SPWLQS-VVLNSKNHNI-GDIIKVRITDVKI 460
            VG+ ++VL+E    ++ G++ +GR    +P     VV  ++   + G +++ +    + 
Sbjct: 419 RVGETLQVLVESVESEDDGEVAIGRAAHQAPETDGQVVFTTREGLVPGRMVEAKAVGTEG 478

Query: 461 STLYGE 466
             L  E
Sbjct: 479 VDLVAE 484


>gi|329847628|ref|ZP_08262656.1| RNA modification enzyme, MiaB family protein [Asticcacaulis
           biprosthecum C19]
 gi|328842691|gb|EGF92260.1| RNA modification enzyme, MiaB family protein [Asticcacaulis
           biprosthecum C19]
          Length = 416

 Score =  333 bits (853), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 136/443 (30%), Positives = 208/443 (46%), Gaps = 30/443 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
              + ++GC++N Y+S  +       G         +D I+ NTC +  +A  +    + 
Sbjct: 2   TVDIVTFGCRLNSYESEVIRKTAADDGL--------SDAIIFNTCAVTGEAVRQARQAIR 53

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R R       KE  D  ++V GC AQ + +        V+ V+G     +       A  
Sbjct: 54  RAR-------KENPDKRLIVTGCAAQTDPDTFAN-MSEVDFVIGNADKQKAGAYRLTADS 105

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            + VV+  +SV +    L  +DG  +R R   AF+ +Q GCD  CTFC++PY RG   S 
Sbjct: 106 ARVVVNDVFSVRETAGHL--IDGLKDRAR---AFVEVQNGCDHRCTFCIIPYGRGNSRSA 160

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           +   VV + ++L+  G  EI L G ++ +W G  L G+    + +   L  +  L RLR 
Sbjct: 161 AAGDVVAQTQRLVAEGYNEIVLTGVDLTSW-GNDLPGQPQLGNLVARILKLVPDLKRLRL 219

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
           ++    ++ D L +A  + + L PYLHL +Q G D ILK M RRH   +   +++++RS+
Sbjct: 220 SSIDAAEIDDTLFRAFAEEERLAPYLHLSLQHGDDLILKRMKRRHLRADAVALVEKVRSI 279

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
           RPDIA  +D I GFP ET++ F   + LVD  G +    F YSPR  TP + M  Q+   
Sbjct: 280 RPDIAFGADMIAGFPTETEEHFDNAVSLVDACGLSYVHVFPYSPRPQTPAAKMP-QLPRP 338

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445
           V  ER   L+ K  E          G+ +  +IEK G        R+     VV    + 
Sbjct: 339 VIKERAARLRAKAEEALRGHLARHAGRTLSCVIEKPG------FARAADFTEVVFTG-DA 391

Query: 446 NIGDIIKVRITDVKISTLYGELV 468
            +G I  + IT        GELV
Sbjct: 392 TVGGISDIAITSHDGKHAVGELV 414


>gi|269837323|ref|YP_003319551.1| MiaB-like tRNA modifying enzyme [Sphaerobacter thermophilus DSM
           20745]
 gi|269786586|gb|ACZ38729.1| MiaB-like tRNA modifying enzyme [Sphaerobacter thermophilus DSM
           20745]
          Length = 449

 Score =  333 bits (853), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 123/436 (28%), Positives = 210/436 (48%), Gaps = 30/436 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           RF + + GC++N  D   +       G + V+   +A++ ++NTC + + A  +    L 
Sbjct: 19  RFAICTLGCKLNQSDEADLRRSLRQAGLQEVDFGSEAEVYIVNTCTVTQLADRRSRQMLR 78

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG-PQTYYRLPELLERAR 144
           R         ++  + LV   GC      +E+    P V++VVG  +    + E+L R  
Sbjct: 79  RAH-------RQNPEALVAAIGCYPAVNPDEL-HAMPEVDIVVGSIEKATVVDEILGRLD 130

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
           +  +  D+D  VE              R R     + IQEGC   CT+C++P  RG   +
Sbjct: 131 WENQAFDSDEPVE----------HVETRTRR---MIKIQEGCRAHCTYCIIPRARGAPRN 177

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
            + ++VV   ++ ID G  E+ L G +V  ++    D      +DLL  + E   + RLR
Sbjct: 178 VAPAEVVRRVQEAIDEGYREVVLTGTHVGTYKWPEGD-RTLRLADLLELVLEATTIERLR 236

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
            T+  P ++ +  I A  +   + P+LH+ +QSGS+ +L+ M R +   ++R+ + R+R 
Sbjct: 237 VTSVGPHEIDERFI-ALVNHPRMAPHLHMALQSGSETVLRRMKRWYNTRQFRRAVRRLRE 295

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             PDIAI++D IVGFPGETD++F  T D V ++G+A+   F +SPR  TP + M +QV  
Sbjct: 296 EVPDIAITTDVIVGFPGETDEEFAETCDFVREMGFAKLHVFPFSPRKDTPAAAMPDQVHP 355

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE----KGKLVGRSPWLQSVVL 440
            VK  R   L+    E   +F    +G+ + VL+E+  ++    +    G +     V +
Sbjct: 356 RVKERRAAELRAIGDELHAAFVARHLGREVRVLVEQVAEQLPDGRSLWSGYTGNYLRVYV 415

Query: 441 NSK--NHNIGDIIKVR 454
                       + VR
Sbjct: 416 PGDPGEDLENRFVSVR 431


>gi|72161199|ref|YP_288856.1| hypothetical protein Tfu_0795 [Thermobifida fusca YX]
 gi|123733592|sp|Q47RT4|RIMO_THEFY RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|71914931|gb|AAZ54833.1| Conserved hypothetical protein [Thermobifida fusca YX]
          Length = 483

 Score =  333 bits (853), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 125/490 (25%), Positives = 199/490 (40%), Gaps = 60/490 (12%)

Query: 22  IVPQR-FFVKSYGCQMNVYDSLRMEDMFFSQGYERVN--SMDDADLIVLNTCHIREKAAE 78
           + P+R   + + GC  N  DS  +     + G+  V+    + AD++++NTC   + A E
Sbjct: 1   MSPRRTVSLITLGCARNEVDSEELAGRLAADGWTLVDADDGEKADVVIVNTCGFIQAAKE 60

Query: 79  KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPE 138
                L              G   VV AGC+A+  G E+    P    V+    Y  + E
Sbjct: 61  DSIETLLNAAE---------GGARVVAAGCLAERYGAELAEAMPEAQ-VISFDDYAHISE 110

Query: 139 LLERARFGKRVVDTDYSVEDKFERLSIVD------------------------------- 167
            LE    G+ +  T ++  D+   L I                                 
Sbjct: 111 RLEDVLAGRPL--TPHTPRDRRTLLPITPVDRSQAAKNHVPGHLTFGEEITPLPDGVAPA 168

Query: 168 -----GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGV 222
                       G  A L I  GCD+ C+FC +P  RG  +SR    V+ EA  L   GV
Sbjct: 169 SGPTIPRLRLTGGPVANLKIASGCDRRCSFCAIPSFRGAYLSRKPEDVLREAEWLAGQGV 228

Query: 223 CEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHG 282
            E+ L+ +N  +  GK L G+      LL  L+ I G+ R+R +   P ++   LI    
Sbjct: 229 RELFLVSENSTS-YGKDL-GDVRALEKLLPRLAAIPGIERVRVSYLQPAEVRPGLIDVLT 286

Query: 283 DLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGE 342
               ++PY  L  Q  S  +L+ M R      + +++ RIR+  P+  I S+FIVGFPGE
Sbjct: 287 GTPGVVPYFDLSFQHASGPLLRRMRRFGDRERFLELVARIRAKAPEAGIRSNFIVGFPGE 346

Query: 343 TDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQ 402
           TD+DF   +  +++        F YS   GT  +    ++ E    ER+  L +   E  
Sbjct: 347 TDEDFAELVAFLEQARLDAIGIFGYSDEDGTEAAGFDGKLPEETIKERVDQLNQLAEELM 406

Query: 403 VSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQS--VVLNSKNHNIGDIIKVRIT 456
               +  +G  I+VL+E    + G   GR    +P +    ++      ++GDI+   + 
Sbjct: 407 AQRAEERIGSTIDVLVEDVL-DDGAYEGRAAHQAPEVDGSTILYADTALHVGDIVPATVL 465

Query: 457 DVKISTLYGE 466
                 L  E
Sbjct: 466 TAMGVDLVAE 475


>gi|332702710|ref|ZP_08422798.1| Ribosomal protein S12 methylthiotransferase rimO [Desulfovibrio
           africanus str. Walvis Bay]
 gi|332552859|gb|EGJ49903.1| Ribosomal protein S12 methylthiotransferase rimO [Desulfovibrio
           africanus str. Walvis Bay]
          Length = 438

 Score =  333 bits (853), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 120/445 (26%), Positives = 189/445 (42%), Gaps = 22/445 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + +  S GC     DS R+           V+  +DA LI +NTC     A E+    + 
Sbjct: 5   KIYSVSLGCPKTRVDSERLLGALGK--VCPVDKPEDAQLIFINTCGFIRPAVEESLQAVL 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
              +           LL  VAGC+      E+    P V++ +        P ++  A  
Sbjct: 63  DAASAAGETDARNRPLL-AVAGCLVSRYAGELSPEMPEVDLWLPLDAMDHWPSMVSEALQ 121

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            + +                V           A+L + EGC   C+FC +P  RG   S 
Sbjct: 122 RRGLAQGPELAAWPARFGGPVS---------YAYLKVSEGCSHACSFCTIPSIRGKLRSE 172

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
              +++ EAR L+D GV E+ L+ Q++ A  G+  +G       LL  L  + GL RLR 
Sbjct: 173 PADRLLVEARMLLDRGVSELVLVAQDLTA-YGREAEGSD-GLIRLLEQLLPLSGLARLRL 230

Query: 266 TTSHPRDMSDCLIKAHGDLDV-LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
              +P  ++D L+         L+PY  +P+Q     IL  M R      +R ++DR+R 
Sbjct: 231 MYLYPAGLTDELLSFLRTAGAPLLPYFDIPLQHAHPEILSRMGRPFARDPWR-VLDRVRE 289

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             P+ AI +  I GFPGET + F+  +D V K        F Y P  GT  + M  QVDE
Sbjct: 290 RFPEAAIRTSLIAGFPGETQEHFQTLLDFVRKARLTHLGVFPYWPEEGTAAAGMEGQVDE 349

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGR----SPWLQSVV 439
           ++K ER+  L +   E         VGQ ++VL+++   +  G  +GR    +P +  VV
Sbjct: 350 DIKQERVRLLMEAQEEISEELMAGYVGQELDVLVDEPSPDWPGLHIGRAWFQAPEVDGVV 409

Query: 440 -LNSKNHNIGDIIKVRITDVKISTL 463
            ++      G ++K  + +     L
Sbjct: 410 YVSGPGVAPGRMVKAMVEEAGAYDL 434


>gi|163796738|ref|ZP_02190696.1| tRNA 2-methylthioadenosine synthase-like protein [alpha
           proteobacterium BAL199]
 gi|159177992|gb|EDP62539.1| tRNA 2-methylthioadenosine synthase-like protein [alpha
           proteobacterium BAL199]
          Length = 430

 Score =  333 bits (853), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 131/456 (28%), Positives = 204/456 (44%), Gaps = 33/456 (7%)

Query: 13  MVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHI 72
           M  +   Q     R  V+++GC++N Y+S  +     + G         +  IV+NTC +
Sbjct: 1   MTHESPQQAPGANR--VETFGCRLNAYESEVIRGHLDAAG--------KSGTIVVNTCAV 50

Query: 73  REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT 132
             +A  +    + R+        +E     +VV GC AQ +          V  VVG + 
Sbjct: 51  TSEAERQARQSIRRLA-------RENPGAEIVVTGCAAQIDPAR-YAAIDGVTRVVGNEE 102

Query: 133 YYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTF 192
             +     + A     V D     E     +S  DG         AF+ +Q+GCD  CTF
Sbjct: 103 KMQAGTWSDTAPPAIHVTDIMEVRETAAHLVSEFDG------RARAFVQVQQGCDHRCTF 156

Query: 193 CVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLY 252
           C++PY RG   S  +  +V++ R L   G  EI L G +V ++ G  L G       +  
Sbjct: 157 CIIPYGRGNSRSVPIGAIVEQVRALAAGGYREIVLTGVDVTSF-GGDLPGRPSLGQMMRR 215

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
            L+ +  L RLR ++  P ++ + L +   D   LMP+LHL +Q+G D +LK M RRH  
Sbjct: 216 LLALVPELERLRLSSVDPVEIDEDLFRLIADEPRLMPHLHLSLQAGDDMVLKRMKRRHLR 275

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
            +  ++++R+R++RP  A  +D I GFP E+D  F  T  L+  +G      F YSPR G
Sbjct: 276 DDVFRLVERVRALRPGTAFGADVIAGFPTESDAMFENTAALLTDLGIQHLHVFPYSPRPG 335

Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS 432
           TP + M  QV  +++  R   L+        S+    VG+   VLIE  G       GR 
Sbjct: 336 TPAARMP-QVPGDIRKARAARLRDIGAANLESWTAGLVGRDDRVLIEVDG------AGRG 388

Query: 433 PWLQSVVLNSKNH-NIGDIIKVRITDVKISTLYGEL 467
                +VL +      G ++ V +  V+   L G  
Sbjct: 389 ESFAPIVLEAGPAVAAGTVVPVTLLGVEGGRLIGRP 424


>gi|29347563|ref|NP_811066.1| putative Fe-S oxidoreductase [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|253572024|ref|ZP_04849428.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|29339463|gb|AAO77260.1| putative Fe-S oxidoreductase [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|251838204|gb|EES66291.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 443

 Score =  333 bits (853), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 117/456 (25%), Positives = 209/456 (45%), Gaps = 20/456 (4%)

Query: 17  IVDQCIVPQRFFVK-SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREK 75
           ++D  +   +  V  + GC++N  ++  +  +    G       + AD+ V+NTC + E 
Sbjct: 1   MIDTTVFQNKTAVYYTLGCKLNFSETSTIGKILREAGVRTARKGEKADICVVNTCSVTEM 60

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135
           A +K    + R+       +K+     VVV GC AQ +  ++  +   V+VV+G +    
Sbjct: 61  ADKKCRQAIHRL-------VKQHPGAFVVVTGCYAQLKPGDVA-KIKGVDVVLGAEQKGD 112

Query: 136 LPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
           L + L      +       +     + +       +R      FL +Q+GCD FC++C +
Sbjct: 113 LLQYLGDLHKHEE----GEAFTTTTKDIRSFSPSCSRGDRTRFFLKVQDGCDYFCSYCTI 168

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
           P+ RG   + +++ +V++AR+    G  EI L G N+    G        TF DL+ +L 
Sbjct: 169 PFARGRSRNGTVASMVEQARQAAAEGGKEIVLTGVNI----GDFGKTTGETFFDLVKALD 224

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
           +++G+ R R ++  P  ++D +I+        MP+ H+P+QSG D +LK M RR+    +
Sbjct: 225 QVEGIERYRISSIEPNLLTDEIIEFVSRSRRFMPHFHIPLQSGCDEVLKLMRRRYDTALF 284

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
              + +I+ V PD  I  D IVG  GET++ F      +  +   Q   F YS R GT  
Sbjct: 285 ASKVKKIKEVMPDAFIGVDVIVGTRGETEEYFEQAYQFISGLDVTQLHVFSYSERPGTQA 344

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWL 435
             +   V    K +R   L     E+  +F    +GQ ++VL+EK  K    + G +   
Sbjct: 345 LKIDYVVSPEEKHQRSQRLLTLSDEKTRAFYTRHIGQTMQVLMEK-SKAGTPMHGFTANY 403

Query: 436 QSVVLNSKNHNIGDIIKVRITDVKI--STLYGELVV 469
             V + +       +I VR+ +     + L G +++
Sbjct: 404 IRVEVENDESLDNQMINVRLGEFNEDMTALKGTILM 439


>gi|296125911|ref|YP_003633163.1| MiaB-like tRNA modifying enzyme YliG [Brachyspira murdochii DSM
           12563]
 gi|296017727|gb|ADG70964.1| MiaB-like tRNA modifying enzyme YliG [Brachyspira murdochii DSM
           12563]
          Length = 440

 Score =  332 bits (852), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 129/454 (28%), Positives = 211/454 (46%), Gaps = 26/454 (5%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +  ++ S GC+ N  D   +  +    G+   N+ +DAD+IV+NTC   E + ++    +
Sbjct: 2   KNIYLHSLGCEKNTVDGEHILAILQKNGFNVTNNPEDADVIVINTCAFIEDSKKESIDAI 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
                  +   K G    ++V+GC+++   +  L     V+  +G     ++ E + +  
Sbjct: 62  FD----HSMYKKYGKCKRLIVSGCMSERYKDNFLDMFKEVDAAIGIHDLEKILEAVNK-- 115

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
                 D  Y  ED  E     D   N     + ++ I +GC   C+FC +P  RG   S
Sbjct: 116 ------DGFYDGEDNTEYKEYGDR-INTGSKYSVYIRISDGCHANCSFCAIPGIRGDHRS 168

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R +  +V EA     NG  EI L+ Q    + G  +  ++    DLL  LS+I+G+  +R
Sbjct: 169 RKIEDIVKEAENYARNGAKEINLIAQETT-YYGHDIY-KRLALPDLLKELSKIEGIEWIR 226

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA-YEYRQIIDRIR 323
               +P  +++ +IKA   +D ++PY  +P+Q   + ILK MNR   A   YR +I+RIR
Sbjct: 227 VLYQNPVVLNNDIIKAFFTIDKVVPYFDIPLQHVDEEILKDMNRGKRAYKFYRNMINRIR 286

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML-EQV 382
           S   +  I +  IVGFPGET + F+  +  V      +   F YS    T    +   ++
Sbjct: 287 SYDENAVIRTSLIVGFPGETKESFKKLIKFVRSAKIDRVGVFTYSEEENTKALTIDKPKI 346

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSV 438
             N K      L +   E      +  +G+ I+VLIE+  ++  K +GRS    P +   
Sbjct: 347 SRNKKMMLRERLMRAAIEVSEERLERFIGKTIDVLIEEK-EDDNKFIGRSKYDAPEVDGC 405

Query: 439 V----LNSKNHNIGDIIKVRITDVKISTLYGELV 468
           V     N+ + NIGDI+KV IT      L G+LV
Sbjct: 406 VEVYNENNYDINIGDIVKVNITHHTEYDLIGDLV 439


>gi|84514448|ref|ZP_01001812.1| RNA modification enzyme, MiaB-family [Loktanella vestfoldensis
           SKA53]
 gi|84511499|gb|EAQ07952.1| RNA modification enzyme, MiaB-family [Loktanella vestfoldensis
           SKA53]
          Length = 462

 Score =  332 bits (852), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 112/456 (24%), Positives = 193/456 (42%), Gaps = 39/456 (8%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
              + S GC   + DS R+     ++GY        A+ +++NTC   + A  +    +G
Sbjct: 27  TIGMVSLGCPKALVDSERILTRLRAEGYAISADYAGAEAVIVNTCGFLDSAKAESLDAIG 86

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                            V+V GC+  AE + I    P +  V GP  Y ++ + +  A  
Sbjct: 87  EALRENGK---------VIVTGCLG-AEPDYIREHHPHILAVTGPHQYEQVLDAVHLA-- 134

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                       D F  L    G     R   ++L I EGC+  C FC++P  RG+  SR
Sbjct: 135 -------VPPSPDPFIDLLPATGVSLTPRHY-SYLKISEGCNHKCKFCIIPDMRGLLNSR 186

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE---------KCTFSDLLYSLSE 256
               V+ EA KL+  GV E+ ++ Q+ +A  G     +         +   +DL   L +
Sbjct: 187 PAHAVLREAEKLVQAGVRELLVISQDTSA-YGLDRKYDLNPWKDGQVRSHITDLTRELGQ 245

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDV-LMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
           +   VRL Y   +P      LI    D    ++PYL +P Q     +L+ M R     + 
Sbjct: 246 LGAWVRLHYVYPYPHV--RDLIPLMADPANGVLPYLDIPFQHSHPDVLRRMARPAAGAKT 303

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
              I   R++ PDI + S FIVG+PGET+ +F+  +D +D     +   F+Y    G   
Sbjct: 304 LDEIAAWRAICPDITLRSTFIVGYPGETEAEFQHLLDWLDAAQLDRVGCFQYENVAGARS 363

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK---GKLVGRS 432
           + + + V   VK +R      K +    +   A VG+ +EV+++   ++     +    +
Sbjct: 364 NTLPDHVPAEVKQDRWDRFMAKAQAISAAKLAAKVGKRLEVIVDDIDEDGIATCRTWADA 423

Query: 433 PWLQSVVLNSKN---HNIGDIIKVRITDVKISTLYG 465
           P +   +   +     ++GDI++V + +     L+G
Sbjct: 424 PEIDGNLFIDEGTEALSVGDIVQVVVDEAGEYDLWG 459


>gi|297839059|ref|XP_002887411.1| radical SAM domain-containing protein [Arabidopsis lyrata subsp.
           lyrata]
 gi|297333252|gb|EFH63670.1| radical SAM domain-containing protein [Arabidopsis lyrata subsp.
           lyrata]
          Length = 602

 Score =  332 bits (852), Expect = 7e-89,   Method: Composition-based stats.
 Identities = 122/446 (27%), Positives = 207/446 (46%), Gaps = 24/446 (5%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           Q  ++K++GC  N  DS  M     + GY      +DADL ++NTC ++  +   + + +
Sbjct: 64  QTIYIKTFGCSHNQSDSEYMAGQLTAFGYALTEVPEDADLWLINTCTVKSPSQSAMSTLI 123

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R R+ K           +V+AGCV Q   +  L+    V+VV G Q   R+ E++E   
Sbjct: 124 TRGRSGKKP---------LVIAGCVPQGSRD--LKELEGVSVV-GVQQIDRVVEIVEETL 171

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G  V           + L  +D    R+      L I  GC   CT+C   + RG   S
Sbjct: 172 KGHEVRLL------TRKTLPALDLPKVRRNNFIEILPINVGCLGACTYCKTKHARGHLGS 225

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
            ++  +V+  R +I  GV EI L  ++  A  G+ +        + +           LR
Sbjct: 226 YTVDSLVERVRTVISEGVKEIWLSSEDTGA-YGRDIGVNLPILLNAIVKELPSDQSTMLR 284

Query: 265 YTTSHPRDMSDCL--IKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
              ++P  + + L  I A      +  +LH+PVQSGSD +L +MNR +TA E+R ++D +
Sbjct: 285 IGMTNPPFILEHLKEIAAVLRHPCVYTFLHVPVQSGSDSVLTAMNREYTASEFRTVVDTL 344

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
             + P + I++D I GFPGETD+DF  T++L+    ++Q    ++ PR GTP + M ++V
Sbjct: 345 TELVPGMQIATDIICGFPGETDEDFSQTVELIKDYKFSQVHISQFYPRPGTPAAKM-KKV 403

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
              +  +R   L      +  +      G+   + I +   +   LVG +     V++  
Sbjct: 404 QSKIVKQRSRDLTSVF--EAFAPYTGMEGREERIWITEIATDGIHLVGHTKGYVQVLVTG 461

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
               +G     RIT V   +++GE++
Sbjct: 462 PESMLGTSAMARITSVGRWSVFGEVI 487


>gi|14521928|ref|NP_127405.1| hypothetical protein PAB1134 [Pyrococcus abyssi GE5]
 gi|14916852|sp|Q9UXX9|Y1729_PYRAB RecName: Full=Putative methylthiotransferase PYRAB17290
 gi|5459148|emb|CAB50634.1| Hypothetical protein, UPF0004 family [Pyrococcus abyssi GE5]
          Length = 425

 Score =  332 bits (852), Expect = 7e-89,   Method: Composition-based stats.
 Identities = 116/445 (26%), Positives = 211/445 (47%), Gaps = 27/445 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + ++++YGC  N  D   M  +    G+E V   D+ +++V+N+C +++    K+   + 
Sbjct: 3   KIYIENYGCARNRADGEIMAALLHLAGHEIVYDPDEGEIVVVNSCAVKDPTERKIARRIK 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            + +             V+V GC+     + I      V+ ++G ++  R+ + +E A  
Sbjct: 63  ELLD---------SGKKVIVTGCLPHVNPDVI---DERVSGILGVKSIDRIIQAVEYALR 110

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G++++      +   ++L   D      R V   + I EGC   CT+C   + RG+  S 
Sbjct: 111 GEKLISVPDWRKRNLDKL---DFPRLSPRTVYFIVPIAEGCLNACTYCATRFARGVLKSY 167

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           S  ++V   +  I  G  EI L  ++     G  +       + LL  ++ I+G  R+R 
Sbjct: 168 SPEKIVGWVKWAIKQGYKEIWLSAEDTG-CYGFDI---GTNLAKLLDEITAIEGEFRVRV 223

Query: 266 TTSHPRD---MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
              +P       D LI+A+ D + +  +LHLPVQSG + IL+ M R +T  E+ +I+   
Sbjct: 224 GMMNPNHVLKFLDELIEAYQD-EKIYKFLHLPVQSGDNDILRRMGRNYTVEEFEEIVKEF 282

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R   PD+ + +D IVGFPGE D+ F+ +++L+ +I   +    +YSPR GT  +   +Q+
Sbjct: 283 RKKFPDLNLHTDIIVGFPGEDDEAFQRSVELIRRIRPDKVNVSRYSPRPGTIAAKW-KQL 341

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
              +  ER   L +   +     N   +G+ +EVLI   GK+ G +   +   + V+L  
Sbjct: 342 PGWIVKERSRLLHRIRLQISYEINQKYIGKKVEVLIHGEGKK-GNVDAVTMNYKHVILPF 400

Query: 443 KNHNIGDIIKVRITDVKISTLYGEL 467
            N   G+     I +   + L GE+
Sbjct: 401 GNS--GEFRIAEIKNATSTYLLGEV 423


>gi|328955574|ref|YP_004372907.1| SSU ribosomal protein S12P methylthiotransferase [Coriobacterium
           glomerans PW2]
 gi|328455898|gb|AEB07092.1| SSU ribosomal protein S12P methylthiotransferase [Coriobacterium
           glomerans PW2]
          Length = 448

 Score =  332 bits (851), Expect = 8e-89,   Method: Composition-based stats.
 Identities = 125/456 (27%), Positives = 210/456 (46%), Gaps = 28/456 (6%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
               + GC  N  D+ RM  +  S GY+   S DDA+++++NTC     A  +       
Sbjct: 8   VLFVTLGCAKNEVDTDRMRALLLSNGYQEAASSDDANVVIVNTCSFLTSATSESIECTLA 67

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           +     + I++     +V+ GCV    G+++    P V   V      R+  +L+     
Sbjct: 68  LAEQTTAGIRDVP---LVMCGCVPSRYGDDLPAELPEVAAFVRTDEEDRIVSVLDDLLGV 124

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           +R            E  + +        G  A++ I +GCD+ C+FCV+P+ RG   SR 
Sbjct: 125 QR------------ETPAFIPRIKRTVEGAVAYVKISDGCDRLCSFCVIPFIRGRYHSRP 172

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTF------SDLLYSLSEIKGL 260
            + ++ EA +L+  GV EI L+GQ+   W G                  +  + +     
Sbjct: 173 AADIIAEAVELVSGGVREIVLIGQDTGVWGGDLPAAAGTGGPANLAQLLVALAAALRPAH 232

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
           V +R     P  M+D LI A  D   ++PY+ +P+Q  S R+L +M R  +  E   + +
Sbjct: 233 VWIRVLYLQPEGMTDELIAAIRDTPEVLPYIDIPIQHVSARLLAAMRRTGSREELEALFE 292

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           R+R   P + I S  +VGFPGE+D++    ++ +  +G+     F YS   GT  + + E
Sbjct: 293 RLRRTIPHMVIRSTAMVGFPGESDEEAAELLEFMASVGFDYTSVFAYSAEEGTVAARLTE 352

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG--KLVGR----SPW 434
           Q+DE VK ER         E   +   A VG+  +V+++    E G  +L+G     +P 
Sbjct: 353 QIDEQVKLERQQAAVDLAEELGFAATAAHVGETADVIVDGVEDEDGELELIGHAWFQAPD 412

Query: 435 LQS-VVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
           L   V L++ + ++GDI+KVR TD     L G ++ 
Sbjct: 413 LDGAVHLDATDASVGDILKVRFTDSFCYELVGSVIA 448


>gi|281411540|ref|YP_003345619.1| MiaB-like tRNA modifying enzyme [Thermotoga naphthophila RKU-10]
 gi|281372643|gb|ADA66205.1| MiaB-like tRNA modifying enzyme [Thermotoga naphthophila RKU-10]
          Length = 434

 Score =  332 bits (851), Expect = 8e-89,   Method: Composition-based stats.
 Identities = 123/437 (28%), Positives = 230/437 (52%), Gaps = 24/437 (5%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +   ++++GC++N Y+S  M +     GY  +   D +   ++N+C + ++  +KV   +
Sbjct: 2   KTVRIETFGCKVNQYESEYMAEQLEKAGYVVLPDGDVS-YYIVNSCAVTKEVEKKVKRLI 60

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             IRN          +  +++ GC AQ   +E    S  V++V+G      + + +  + 
Sbjct: 61  KSIRN-------RNRNAKIILTGCFAQLSPDEARNLS--VDMVLGIDEKKHIVDHIN-SL 110

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG-IEI 203
            GK+ V         +E++       + +    +++ +++GCD  CT+C +   RG    
Sbjct: 111 NGKQQVIVSEPGRPVYEKVK-----GSFEDRTRSYIKVEDGCDNTCTYCAIRLARGSKIR 165

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           S+ L    DE  +++  G  EI + G N+    GK +     + ++LL  + ++ G  R+
Sbjct: 166 SKPLEIFKDEFVEMVAKGYKEIVITGVNLG-KYGKDM---GSSLAELLKVIEKVPGDYRV 221

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R ++ +  D++D +++A      L P+LH+ VQSGSD +LK M R++   ++ +++D++R
Sbjct: 222 RLSSINVEDVNDEIVEAFKRNPRLCPHLHISVQSGSDDVLKRMGRKYRISDFMRVVDKLR 281

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           S+ PD +I++D IVGFPGETDDDF+ T+DLV+K+G+++   F++SPR GTP S M   V 
Sbjct: 282 SIDPDFSITTDIIVGFPGETDDDFQKTLDLVEKVGFSRVHIFRFSPRPGTPASRMGGSVP 341

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
           E+ K ERL  L++K ++  + +    +G+  +VL E     KG L G   +         
Sbjct: 342 ESKKKERLDVLKEKAKDVSIRYRKRIIGKERKVLAE-WYVMKGILSGYDEYYVKHEFVGD 400

Query: 444 NHNIGDIIKVRITDVKI 460
              +G+   VR+  +  
Sbjct: 401 --RVGEFHNVRVKSLSE 415


>gi|148269242|ref|YP_001243702.1| MiaB-like tRNA modifying enzyme [Thermotoga petrophila RKU-1]
 gi|147734786|gb|ABQ46126.1| MiaB-like tRNA modifying enzyme [Thermotoga petrophila RKU-1]
          Length = 434

 Score =  332 bits (851), Expect = 8e-89,   Method: Composition-based stats.
 Identities = 123/437 (28%), Positives = 230/437 (52%), Gaps = 24/437 (5%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +   ++++GC++N Y+S  M +     GY  +   D +   ++N+C + ++  +KV   +
Sbjct: 2   KTVRIETFGCKVNQYESEYMAEQLEKAGYVVLPDGDVS-YYIVNSCAVTKEVEKKVKRLI 60

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             IRN          +  +++ GC AQ   +E    S  V++V+G      + + +  + 
Sbjct: 61  KSIRN-------RNRNAKIILTGCFAQLSPDEARNLS--VDMVLGIDEKKHIVDHIN-SL 110

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG-IEI 203
            GK+ V         +E++       + +    +++ +++GCD  CT+C +   RG    
Sbjct: 111 NGKQQVIVSEPGRPVYEKVK-----GSFEDRTRSYIKVEDGCDNTCTYCAIRLARGSKIR 165

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           S+ L    DE  +++  G  EI + G N+    GK +     + ++LL  + ++ G  R+
Sbjct: 166 SKPLEIFKDEFVEMVAKGYKEIVITGVNLG-KYGKDM---GSSLAELLKVIEKVPGDYRV 221

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R ++ +  D++D +++A      L P+LH+ VQSGSD +LK M R++   ++ +++D++R
Sbjct: 222 RLSSINVEDVNDEIVEAFKRNPRLCPHLHISVQSGSDDVLKRMGRKYRISDFMRVVDKLR 281

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           S+ PD +I++D IVGFPGETDDDF+ T+DLV+K+G+++   F++SPR GTP S M   V 
Sbjct: 282 SIDPDFSITTDIIVGFPGETDDDFQKTLDLVEKVGFSRVHIFRFSPRPGTPASRMGGSVP 341

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
           E+ K ERL  L++K ++  + +    +G+  +VL E     KG L G   +         
Sbjct: 342 ESKKKERLDVLKEKAKDVSIRYRKRIIGKERKVLAE-WYVMKGILSGYDEYYVKHEFVGD 400

Query: 444 NHNIGDIIKVRITDVKI 460
              +G+   VR+  +  
Sbjct: 401 --RVGEFHNVRVKSLSE 415


>gi|126461784|ref|YP_001042898.1| ribosomal protein S12 methylthiotransferase [Rhodobacter
           sphaeroides ATCC 17029]
 gi|238066580|sp|A3PIG0|RIMO_RHOS1 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|126103448|gb|ABN76126.1| MiaB-like tRNA modifying enzyme YliG [Rhodobacter sphaeroides ATCC
           17029]
          Length = 455

 Score =  332 bits (851), Expect = 8e-89,   Method: Composition-based stats.
 Identities = 116/448 (25%), Positives = 191/448 (42%), Gaps = 28/448 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
              + S GC   + DS R+     ++GY        AD +++NTC   + A  +    +G
Sbjct: 31  TIGMVSLGCPKALVDSERILTRLRAEGYAISPDYAGADAVIVNTCGFLDSAKAESLEAIG 90

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                         +  V+V GC+  AE + +    P V  V GP  Y ++ + +  A  
Sbjct: 91  EALR---------ENGRVIVTGCLG-AEPDYVTGAHPKVLAVTGPHQYEQVLDAVHGA-- 138

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                       D F  L    G     R   ++L I EGC+  C FC++P  RG   SR
Sbjct: 139 -------VPPAPDPFVDLLPATGVRLTPRHF-SYLKISEGCNHTCRFCIIPDMRGRLASR 190

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
               V+ EA KL++ GV E+ ++ Q+ +A+       EK     L   L  +   VRL Y
Sbjct: 191 PERAVLREAEKLVEAGVRELLVISQDTSAYGTDWKGPEKFPILPLARELGRLGAWVRLHY 250

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
              +P      LI    +  +++PYL +P Q     +LK M R   A      I   R  
Sbjct: 251 VYPYPHV--RELIPLMAE-GLVLPYLDIPFQHAHPEVLKRMARPAAAARTLDEIAAWRRD 307

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P+I + S FIVG+PGET+ +F+  +D +D+    +   F+Y    G   + + + V   
Sbjct: 308 CPEITLRSTFIVGYPGETEAEFQTLLDWLDEAQLDRVGCFQYENVAGARSNALPDHVAPE 367

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG--KLVGRSPWLQSVVLNSK 443
           VK ER     +K +    +   A VG+ IEV++++  ++    +    +P +   +   +
Sbjct: 368 VKQERWDRFMEKAQAISEAKLAAKVGRRIEVIVDEVDEDGATCRTKADAPEIDGNLFIDE 427

Query: 444 NHN---IGDIIKVRITDVKISTLYGELV 468
                  GDI+ V + +     L+G  V
Sbjct: 428 GFKGLAPGDILTVEVEEAGEYDLWGRPV 455


>gi|291522742|emb|CBK81035.1| MiaB-like tRNA modifying enzyme [Coprococcus catus GD/7]
          Length = 454

 Score =  332 bits (851), Expect = 8e-89,   Method: Composition-based stats.
 Identities = 120/448 (26%), Positives = 212/448 (47%), Gaps = 24/448 (5%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + +     + GC++N Y++  M   F ++GYE      +A + V+NTC +   A  K   
Sbjct: 1   MKKTVAFCTLGCKVNQYETDAMRGSFEAEGYEVKEFSQEASVYVINTCTVTNMADRKSRQ 60

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            + R +       K+  D ++V  GC  QA  E++     ++++V+G     ++ +++E+
Sbjct: 61  MMHRAK-------KKNPDGIIVAVGCYVQAAKEQL-EEDTLIDLVIGNNMKSQVVQIVEQ 112

Query: 143 -ARFGKRVVDTDYSVEDKFERLSIVDGGYNR-KRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
             +  +   D D  V D                    A++ IQ+GC++FC++C++PY RG
Sbjct: 113 YIQDNRHTEDRDAYVADIAHSHEYETMHIETVSEHTRAYIKIQDGCNQFCSYCIIPYARG 172

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG-----------EKCTFSD 249
              SR +  ++ E R L  NG  EI L G ++++  G   +            +     D
Sbjct: 173 RVRSRKMEDILQEVRNLTANGYKEIVLTGIHISS-YGLDFEHTADEQEDYVPFKNSALID 231

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
           L+ +LS I+GL R+R  +  PR +++  ++    +  + P+ HL +QSG D  LK MNR 
Sbjct: 232 LIEALSGIEGLERIRLGSLEPRIITENFVRRLCKVPQICPHFHLSLQSGCDETLKRMNRH 291

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369
           +T   Y +    +R      A+++D IVGFPGET+++F  T   ++ + ++    FKYS 
Sbjct: 292 YTTALYLEKCGILRQYFDRPALTTDVIVGFPGETEEEFAQTERFLETVHFSDMHIFKYSK 351

Query: 370 RLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG--K 427
           R GT  ++M  Q+D  +++ R   L    +  +  F +AC  Q   VLIE+  +  G   
Sbjct: 352 RRGTKAADMPNQIDPQLQSVRSEKLIALGKRMKDDFLEACKDQEQIVLIEEETEIDGTKY 411

Query: 428 LVGRSPWLQSVVLNSKNHNIGDIIKVRI 455
           + G S                 +IK  I
Sbjct: 412 MTGHSKNYIRCAFEMDGLVPNMVIKGTI 439


>gi|86136536|ref|ZP_01055115.1| RNA modification enzyme, MiaB-family protein [Roseobacter sp.
           MED193]
 gi|85827410|gb|EAQ47606.1| RNA modification enzyme, MiaB-family protein [Roseobacter sp.
           MED193]
          Length = 470

 Score =  332 bits (851), Expect = 8e-89,   Method: Composition-based stats.
 Identities = 119/459 (25%), Positives = 198/459 (43%), Gaps = 43/459 (9%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           + S GC   + DS R+     ++GY        AD +++NTC   + A  +    +G   
Sbjct: 31  MVSLGCPKALVDSERILTRLRAEGYGISPDYAGADAVIVNTCGFLDSAKAESLEAIGEA- 89

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
            LK +         V+V GC+  AE + I    P +  V GP  Y ++ + +  A     
Sbjct: 90  -LKENGK-------VIVTGCLG-AEPDYIREHHPRILAVTGPHQYEQVLDAVHAA----- 135

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
                 +  + F  L    G     R   ++L I EGC+  C FC++P  RG   SR   
Sbjct: 136 ----VPADPNPFIDLLPATGVQLTPRHF-SYLKISEGCNHKCKFCIIPDMRGKLASRPAH 190

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE---------KCTFSDLLYSLSEIKG 259
            V+ EA KL+  GV E+ ++ Q+ +A  G     +         +    DL   L ++  
Sbjct: 191 AVLREADKLVKAGVKELLVISQDTSA-YGLDRKYDVNPWNEGEVRSHILDLSRELGKLAP 249

Query: 260 ----LVRLRYTTSHPRDMSDCLIKAHGDLDV-LMPYLHLPVQSGSDRILKSMNRRHTAYE 314
                VRL Y   +P      LI    D D  L+PY+ +P Q     +LK M R     +
Sbjct: 250 ADELWVRLHYVYPYPHV--RDLIPLMADPDNALLPYMDIPFQHSHPDVLKRMARPAHTAK 307

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
               I   R + PDI + S FIVG+PGET+ +F+  +D +D+    +   FKY    G  
Sbjct: 308 TLTEIAAWREICPDITLRSTFIVGYPGETEAEFQHLLDWMDEAQLDRVGCFKYENVDGAR 367

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK---GKLVGR 431
            + + + V E VK ER     +K +    +   A VGQI +V+++   ++     +    
Sbjct: 368 SNALPDHVAEEVKQERWERFMEKAQAISEAKLQAKVGQICQVIVDDIDEDGIATCRTKAD 427

Query: 432 SPWLQSVVLNSK---NHNIGDIIKVRITDVKISTLYGEL 467
           +P +   +   +     ++GD++ V + +     L+G +
Sbjct: 428 APEIDGNLFIDEGTGGLSVGDLVTVEVDEAGDYDLWGRV 466


>gi|317497456|ref|ZP_07955776.1| MiaB-like tRNA modifying enzyme [Lachnospiraceae bacterium
           5_1_63FAA]
 gi|316895242|gb|EFV17404.1| MiaB-like tRNA modifying enzyme [Lachnospiraceae bacterium
           5_1_63FAA]
          Length = 440

 Score =  332 bits (851), Expect = 8e-89,   Method: Composition-based stats.
 Identities = 123/433 (28%), Positives = 215/433 (49%), Gaps = 13/433 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +R  + + GC++N Y++  M  M    G   V+  + AD+ ++NTC +   A  K    L
Sbjct: 6   KRAAIVTLGCKVNQYETDAMYGMLKEAGVTMVDPKEAADIYIVNTCSVTNMAERKSRQML 65

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R +       K+  D++VV  GC AQ   EE+  +   +++++G      L  +LE   
Sbjct: 66  HRAK-------KKNLDVVVVAVGCYAQVGKEEL-SKDTNIDLIIGNNKKKDLIHILEEHM 117

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGG-YNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             K        V D               K    A++ +Q+GC++FC++C++PY RG   
Sbjct: 118 GEKESAAESIEVIDIAHDQEYESLHVEQLKEHTRAYIKVQDGCNQFCSYCIIPYARGRVR 177

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR + +V++E   L  +G  E  + G +V ++   G D    T +DLL  +++I  + R+
Sbjct: 178 SRKMEEVLEEITNLTKHGCQEFVITGIHVTSY---GKDLGDVTLTDLLEEIAKIPEVKRI 234

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R  +  P  ++   +     ++   P+ HL +QSG D +LK MNR++T  + R+    IR
Sbjct: 235 RLGSLEPGFITKDTLDRLSKMESFCPHFHLSLQSGCDSVLKRMNRKYTTQDIREKCKAIR 294

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
                 A+++D IVGFPGET+++F  T   +++I   +   FKYS R GT  ++M  Q++
Sbjct: 295 EHFQYPALTTDIIVGFPGETEEEFEETRKFLEEIDLYEMHVFKYSIRKGTKAADMKPQIN 354

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVLNS 442
           + +KA+R   L +  ++ Q  F    +G + EVLIE+    +     G +     V L S
Sbjct: 355 DQIKAKRSNVLLEMSKQHQKEFETKQLGMVKEVLIEEKMHGKDHYYTGHTKEYIKVALYS 414

Query: 443 KNHNIGDIIKVRI 455
           +      I+KV++
Sbjct: 415 EEPLENKIVKVKL 427


>gi|167767374|ref|ZP_02439427.1| hypothetical protein CLOSS21_01893 [Clostridium sp. SS2/1]
 gi|167711349|gb|EDS21928.1| hypothetical protein CLOSS21_01893 [Clostridium sp. SS2/1]
          Length = 440

 Score =  332 bits (851), Expect = 8e-89,   Method: Composition-based stats.
 Identities = 123/433 (28%), Positives = 214/433 (49%), Gaps = 13/433 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +R  + + GC++N Y++  M  M    G   V+  + AD+ ++NTC +   A  K    L
Sbjct: 6   KRAAIVTLGCKVNQYETDAMYGMLKEAGVMMVDPKEAADIYIVNTCSVTNMAERKSRQML 65

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R +       K+  D++VV  GC AQ   EE+  +   +++++G      L  +LE   
Sbjct: 66  HRAK-------KKNPDVVVVAVGCYAQVGKEEL-SKDTNIDLIIGNNKKKDLIHILEEHM 117

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGG-YNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             K        V D               K    A++ +Q+GC++FC++C++PY RG   
Sbjct: 118 GEKESAAESIEVIDIAHDQEYESLHVEQLKEHTRAYIKVQDGCNQFCSYCIIPYARGRVR 177

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR + +V++E   L  +G  E  + G +V ++   G D    T  DLL  +++I  + R+
Sbjct: 178 SRKMEEVLEEITNLTKHGCQEFVITGIHVTSY---GKDLGDVTLIDLLEEIAKIPEVKRI 234

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R  +  P  ++   +     ++   P+ HL +QSG D +LK MNR++T  + R+    IR
Sbjct: 235 RLGSLEPGFITKDTLDRLSKMESFCPHFHLSLQSGCDSVLKRMNRKYTTQDIREKCKAIR 294

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
                 A+++D IVGFPGET+++F  T   +++I   +   FKYS R GT  ++M  Q++
Sbjct: 295 EHFQYPALTTDIIVGFPGETEEEFEETRKFLEEIDLYEMHVFKYSIRKGTKAADMKPQIN 354

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVLNS 442
           + +KA+R   L +  ++ Q  F    +G + EVLIE+    +     G +     V L S
Sbjct: 355 DQIKAKRSNVLLEMSKQHQKEFETKQLGMVKEVLIEEKMHGKDHYYTGHTKEYIKVALYS 414

Query: 443 KNHNIGDIIKVRI 455
           +      I+KV++
Sbjct: 415 EEPLENKIVKVKL 427


>gi|269127512|ref|YP_003300882.1| MiaB-like tRNA modifying enzyme YliG [Thermomonospora curvata DSM
           43183]
 gi|268312470|gb|ACY98844.1| MiaB-like tRNA modifying enzyme YliG [Thermomonospora curvata DSM
           43183]
          Length = 484

 Score =  332 bits (851), Expect = 8e-89,   Method: Composition-based stats.
 Identities = 122/476 (25%), Positives = 197/476 (41%), Gaps = 45/476 (9%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +   + + GC  N  DS  +       G+  V+    A ++V+NTC   + A +     L
Sbjct: 5   RTVCMVTLGCARNEVDSEELAARLEDAGWTLVDEAGQAGVVVVNTCGFIDAAKKDSIDTL 64

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             +               VV AGC+A+  G E+    P  + V+    Y  + E LE   
Sbjct: 65  LAV---------HDSGAKVVAAGCLAERYGAELAESLPEADAVLSFDDYAHIGERLEEVL 115

Query: 145 FG-----------------------KRVVDTDYSVE-DKFERLSIVDGGYNRKR----GV 176
            G                       ++  D       +  E L+   G    +R    G 
Sbjct: 116 AGIRRPAHTPRDRRTLLPITPVARREKARDVAIPGHGELPEGLAPASGPRVLRRRLEGGP 175

Query: 177 TAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR 236
            A L +  GCD+ CTFC +P  RG  +SR   +V+ EA  L + GV E+ L+ +N  +  
Sbjct: 176 VAPLKLASGCDRRCTFCAIPAFRGAYVSRDPQEVLAEAAWLAERGVREVVLVSENSTS-Y 234

Query: 237 GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQ 296
           GK L G+      LL  L+ I G+ R+R +   P ++   LI+       + PY  L  Q
Sbjct: 235 GKDL-GDLRALEKLLPQLAAIDGIERVRLSYLQPAELRPGLIEVLCTTPGVAPYFDLSFQ 293

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
             S  +L+ M R      + +++ RIR   PD  + S+FIVGFPGET+DD    M  + +
Sbjct: 294 HASGPVLRRMRRFGDRETFGELLARIRDKAPDAGVRSNFIVGFPGETEDDLEELMAFLSE 353

Query: 357 IGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEV 416
                   F YS   GT  + +  ++DE   A R+  +     E      +  +G  + V
Sbjct: 354 ARLDAIGVFGYSDEEGTEAAALDGKLDEEEIAHRVAEVSHLAEELTAQRAEERIGTTVRV 413

Query: 417 LIEKHGKEKGKLVGR----SPWLQS-VVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
           L+E+   E G   GR    +P +   V++  +   +G+ +   + D +   L  E 
Sbjct: 414 LLEEQV-EPGVFEGRAEHQAPEVDGTVLVRGRGLAVGEFVTATVVDCEGVDLVAEP 468


>gi|157803826|ref|YP_001492375.1| MiaB-like tRNA modifying enzyme [Rickettsia canadensis str. McKiel]
 gi|157785089|gb|ABV73590.1| MiaB-like tRNA modifying enzyme [Rickettsia canadensis str. McKiel]
          Length = 422

 Score =  332 bits (851), Expect = 9e-89,   Method: Composition-based stats.
 Identities = 118/432 (27%), Positives = 204/432 (47%), Gaps = 32/432 (7%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V ++GC++N+Y+S  +       G +        +++V NTC + + A ++    +   +
Sbjct: 9   VVTFGCRLNIYESEIIRKNLELSGLD--------NVMVFNTCTVTKAAEKQARQAIRGAK 60

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
                  K+  DL ++V GC AQ    +I    P V+ V+G +          +    K 
Sbjct: 61  -------KDNPDLKIIVTGCSAQTSP-QIYANMPEVDKVIGNEEKLLPNYY--QITDEKI 110

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
            V+   SV++    L     G +R     AF+ +Q GCD FCTFC++PY RG   S  + 
Sbjct: 111 AVNDIMSVKETAGHLVSSFNGKSR-----AFIQVQNGCDHFCTFCIIPYGRGKSRSVPIG 165

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
            + ++ + L+ NG  E+   G +V A  G  L G       +   L+ +  L RLR ++ 
Sbjct: 166 AITEQVKHLMLNGFKEVVFTGVDVTA-YGSDLPGSPTFAQMIKRVLNLVPELRRLRLSSI 224

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
              ++ D L +     + +MP+ H+ +Q+G D ILK M RRH      +   ++R++RP+
Sbjct: 225 DVAEIDDELFELIAYSERIMPHFHISLQAGDDMILKRMKRRHKRTNVIEFCWKLRAIRPE 284

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           ++  +D I GFP ET + F  T  L+ +        F YS R GTP + M  QV + ++ 
Sbjct: 285 VSFGADIIAGFPTETPEMFENTRKLISEAELQYLHVFPYSEREGTPAARMP-QVPKPIRK 343

Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIG 448
           ER   L+++ + Q   F    +GQ +E+L+E +       +  +     V L  K   IG
Sbjct: 344 ERAEILRQEGQNQLTEFFKKHIGQKVELLVENNN------IAHTENFIPVKLE-KPLEIG 396

Query: 449 DIIKVRITDVKI 460
            I K ++  ++ 
Sbjct: 397 QIFKAKLVGIEE 408


>gi|332557784|ref|ZP_08412106.1| ribosomal protein S12 methylthiotransferase [Rhodobacter
           sphaeroides WS8N]
 gi|332275496|gb|EGJ20811.1| ribosomal protein S12 methylthiotransferase [Rhodobacter
           sphaeroides WS8N]
          Length = 455

 Score =  332 bits (851), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 117/448 (26%), Positives = 191/448 (42%), Gaps = 28/448 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
              + S GC   + DS R+     ++GY        AD +++NTC   + A  +    +G
Sbjct: 31  TIGMVSLGCPKALVDSERILTRLRAEGYAISPDYAGADAVIVNTCGFLDSAKAESLEAIG 90

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                         +  V+V GC+  AE + I    P V  V GP  Y ++ + +  A  
Sbjct: 91  EALR---------ENGRVIVTGCLG-AEPDYITGAHPKVLAVTGPHQYEQVLDAVHGA-- 138

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                       D F  L    G     R   ++L I EGC+  C FC++P  RG   SR
Sbjct: 139 -------VPPAPDPFVDLLPATGVRLTPRHF-SYLKISEGCNHTCRFCIIPDMRGRLTSR 190

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
               V+ EA KL++ GV E+ ++ Q+ +A+       EK     L   L  +   VRL Y
Sbjct: 191 PERAVLREAEKLVEAGVRELLVISQDTSAYGTDWKGPEKFPILPLARELGRLGAWVRLHY 250

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
              +P      LI    +  +++PYL +P Q     +LK M R   A      I   R  
Sbjct: 251 VYPYPHV--RELIPLMAE-GLVLPYLDIPFQHAHPEVLKRMARPAAAARTLDEIAAWRRD 307

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P+I + S FIVG+PGET+ +F+  +D +D+    +   F+Y    G   + + + V   
Sbjct: 308 CPEITLRSTFIVGYPGETEAEFQTLLDWLDEAQLDRVGCFQYENVAGARSNALPDHVAPE 367

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG--KLVGRSPWLQSVVLNSK 443
           VK ER     +K +    +   A VG+ IEV++++  ++    +    +P +   +   +
Sbjct: 368 VKQERWDRFMEKAQAISEAKLAAKVGRRIEVIVDEVDEDGATCRTKADAPEIDGNLFIDE 427

Query: 444 NHN---IGDIIKVRITDVKISTLYGELV 468
                  GDI+ V + +     L+G  V
Sbjct: 428 GFKGLAPGDILAVEVEEAGEYDLWGRPV 455


>gi|126728064|ref|ZP_01743880.1| MiaB-like Radical SAM protein [Sagittula stellata E-37]
 gi|126711029|gb|EBA10079.1| MiaB-like Radical SAM protein [Sagittula stellata E-37]
          Length = 452

 Score =  332 bits (851), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 119/449 (26%), Positives = 192/449 (42%), Gaps = 30/449 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
              + S GC   + DS R+     ++GY   +    AD +++NTC   + A  +    +G
Sbjct: 26  TIGMVSLGCPKALVDSERILTRLRAEGYGISSDYSGADAVIVNTCGFLDSAKAESLDAIG 85

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                         +  V+V GC+  AE E I    P V  V GP  Y ++ + +  A  
Sbjct: 86  EALA---------ENGRVIVTGCLG-AEPEYITGSHPKVLAVTGPHQYEQVLDAVHGA-- 133

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                    S +   + L     G +       +L I EGC+  C FC++P  RG   SR
Sbjct: 134 ------VPPSPDPFIDLLPST--GVSLTPRHYGYLKISEGCNHKCRFCIIPDMRGRLQSR 185

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE-KCTFSDLLYSLSEIKGLVRLR 264
               V+ EA KL++ GV E+ ++ Q+ +A+     D + K  F DL   L ++   VRL 
Sbjct: 186 PARAVLREAEKLVEAGVKELLVISQDTSAYGTDWKDRDAKFPFVDLARDLGDLGAWVRLH 245

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           Y   +P       + A G    ++PYL +P Q      L+ M R   A      I   R+
Sbjct: 246 YVYPYPHVRQVIPLMAEG---KVLPYLDIPFQHSHTDTLRRMARPAAAERTLDEIAAWRA 302

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             PDIA+ S FIVG+PGET+ +F+  +D +D+    +   F+Y    G   + + + V E
Sbjct: 303 DCPDIALRSTFIVGYPGETEAEFQHLLDWMDEAQLDRVGCFQYENVDGARSNALPDHVPE 362

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQII---EVLIEKHGKEKGKLVGRSPWLQSVVLN 441
            VKAER     +K +    +   A VGQ +      ++  G    +    +P +   +  
Sbjct: 363 EVKAERWARFMEKAQAISEAKLAAKVGQRLDVIVDDVDVDGIATCRTKADAPEIDGNLFI 422

Query: 442 SKNH---NIGDIIKVRITDVKISTLYGEL 467
            +       G I+ V + +     L+G L
Sbjct: 423 DEGAGALQPGQIVTVEVDEAGEYDLWGRL 451


>gi|328953723|ref|YP_004371057.1| MiaB-like tRNA modifying enzyme [Desulfobacca acetoxidans DSM
           11109]
 gi|328454047|gb|AEB09876.1| MiaB-like tRNA modifying enzyme [Desulfobacca acetoxidans DSM
           11109]
          Length = 440

 Score =  331 bits (850), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 118/440 (26%), Positives = 209/440 (47%), Gaps = 18/440 (4%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
             ++GC++N Y+S  M +      +   +S + AD++V+NTC +  +   +V   L +  
Sbjct: 13  FVTFGCKVNQYESAFMAEQAEKLTFTL-SSPEAADILVVNTCTVTARTDRQVRQCLRQWG 71

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF--G 146
            L+           ++V GC AQ   +E+    P V  V G     R  ELL       G
Sbjct: 72  RLQ-------SPPTILVTGCYAQRAPQELAN-FPGVKAVFGNVEKGRWLELLAAMSQTAG 123

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
             V  +D    ++F  + +     + +    AF+ IQ+GC  +C++C+VP  RG E S  
Sbjct: 124 TMVRVSDIQNCNRFVPMPLGSFWGHTR----AFMKIQDGCGHYCSYCIVPLVRGPERSLP 179

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
            S ++ + + L D G  EI   G N+ +  G+ L G+K    DL+  L +    +R R++
Sbjct: 180 SSDLLRQLQHLSDAGFQEIVFTGVNL-SRYGRDLPGDK-GLIDLVRLLRQTSWPLRFRFS 237

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
           +  P+D+S  L++   D     P+ H+P+QSG+  +L +M+R +    +  +I  + ++ 
Sbjct: 238 SLEPQDISYGLLRELSDWPHFCPHFHIPLQSGASAVLAAMHRNYQPAWFEALIRELTALF 297

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           P  A+  D +VGFP ET   F  T +L++++  A    F YS R GT  + +  Q     
Sbjct: 298 PQAAVGLDVMVGFPTETAAAFEQTKELLNRLPVAYLHVFPYSARPGTEAAVLSPQTSARE 357

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKH-GKEKGKLVGRSPWLQSVVLNSKNH 445
             +R   L+     +++ F    +GQ++EVL+E       G L G +     V+L     
Sbjct: 358 VGQRARSLRDLSHGKKLEFYQRHLGQVVEVLVEGPVAHRPGWLKGLTANYLRVMLPGPPE 417

Query: 446 NIGDIIKVRITDVKISTLYG 465
            +   I++R+ ++    L G
Sbjct: 418 WVNRFIRLRLIEMNGQDLIG 437


>gi|302340232|ref|YP_003805438.1| MiaB-like tRNA modifying enzyme YliG [Spirochaeta smaragdinae DSM
           11293]
 gi|301637417|gb|ADK82844.1| MiaB-like tRNA modifying enzyme YliG [Spirochaeta smaragdinae DSM
           11293]
          Length = 441

 Score =  331 bits (850), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 123/450 (27%), Positives = 194/450 (43%), Gaps = 24/450 (5%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +R++++  GC  N  D+  +       G++ V     ADLI++N+C   E A ++  +  
Sbjct: 4   KRYYIEKLGCAKNQVDAEIIAARLDDAGWQYVEDAGAADLIIINSCGFIEAARQEAVNVT 63

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
              R        +     ++ AGC+AQ  G  +L     ++ V G      + ++LE   
Sbjct: 64  LSARA-------DYPKARILFAGCMAQRYGARLLEEMTEIDGVFGNFAVDDITDILEPLF 116

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
             KR V          E     +         +++L I EGC+ FC++C +P  RG   S
Sbjct: 117 EDKRPVLLPE------ETKLACNRNRLFSFPGSSYLRISEGCNHFCSYCAIPLIRGSLRS 170

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
             + QVV EA +LI NGV EI L+ Q++ A  G    G    F +LL  LS ++G   LR
Sbjct: 171 VPMEQVVKEADRLIRNGVKEINLVAQDLAA-YGTD-QGTASLFPELLRRLSSLEGDFWLR 228

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
               HP      +         ++PY  +P+Q    +IL SM RR  A  Y  +I  IRS
Sbjct: 229 MLYIHPDHFPKEIFPILQADSRILPYFDIPLQHAHPKILSSMGRRGDAEGYLALIREIRS 288

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             PD  I S F++G+PGE   +  A    + +     A  F +S   GT  + +   + +
Sbjct: 289 ALPDATIRSTFLLGYPGEGGKEAAALESFIAEARLDWAGFFLFSREEGTKAALLRGPLMQ 348

Query: 385 NV----KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQ 436
            +       RL  LQK      +      VG   +VLIE+  KE+   +GR    +P + 
Sbjct: 349 RLAMPAAERRLRRLQKLQESISMERAALRVGIETKVLIEEPVKEEDVALGRAWFQAPEVD 408

Query: 437 S-VVLNSKNHNIGDIIKVRITDVKISTLYG 465
              V+++     GD +  RI       L  
Sbjct: 409 GATVVSAPALKAGDWMTCRIVRSNGFDLEA 438


>gi|158292783|ref|XP_314113.4| AGAP005211-PA [Anopheles gambiae str. PEST]
 gi|157017155|gb|EAA09381.5| AGAP005211-PA [Anopheles gambiae str. PEST]
          Length = 553

 Score =  331 bits (850), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 120/467 (25%), Positives = 207/467 (44%), Gaps = 36/467 (7%)

Query: 14  VSQIVDQCIVPQR--FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCH 71
           V + +   ++P+    ++K++GC  N  D+  M       GY   +  D ADL VLN+C 
Sbjct: 53  VEKPLLDSVIPETQHIYMKTWGCAHNTSDTEYMAGQLAQYGYNLTSDKDSADLWVLNSCT 112

Query: 72  IREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ 131
           ++  + +   + +                  VVVAGCV QA       +      VVG Q
Sbjct: 113 VKNPSEDTFRNEIEAAHQA---------GKHVVVAGCVPQAAPRSDYLKG---LSVVGVQ 160

Query: 132 TYYRLPELLERARFGKRVVDTDYSVEDKFE-RLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190
              R+ E++E    G  V        D  +     +     RK  +   + I  GC   C
Sbjct: 161 QIDRVAEVVEETLKGHSVRLLQAKKVDGRKVAGPKLALPKVRKNPLIEVIPINSGCLNAC 220

Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDL 250
           T+C   + R   +S  + ++VD A+++  +GVCEI L  ++     G+ +     +  +L
Sbjct: 221 TYCKTKFARADLVSYPVQEIVDRAQQVFQDGVCEIWLTSEDTGT-YGRDI---GSSLPEL 276

Query: 251 LYSLSEIK--------GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
           L+ L E+         G+    Y   H  +M+  L         +  +LH+PVQSGSD I
Sbjct: 277 LWQLVEVIPEGCMMRLGMTNPPYILEHLDEMAKIL-----SHPRVYSFLHIPVQSGSDAI 331

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           L  M R +   ++ +++D +R+  P I I++D I GFPGET+ DF  T+ L +K  +   
Sbjct: 332 LGEMRREYCVKDFERMVDFLRAQVPGITIATDIICGFPGETEADFDDTLALCEKYQFPSL 391

Query: 363 FSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACV-GQIIEVLIEKH 421
           F  ++ PR GTP + M  +V  N    R   L                 G    VL+ + 
Sbjct: 392 FINQFFPRPGTPAAKMT-KVPANEVKTRTKRLTDLF--HSYEPYKKYEAGTKQTVLVTEI 448

Query: 422 GKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
             ++   VG + + + ++L   N+ +G  ++V IT     +++G+++
Sbjct: 449 SHDRKHFVGHNKFYEQILLPMHNNLLGKQVEVEITGCTKFSMFGKVI 495


>gi|126739931|ref|ZP_01755622.1| RNA modification enzyme, MiaB-family protein [Roseobacter sp.
           SK209-2-6]
 gi|126719163|gb|EBA15874.1| RNA modification enzyme, MiaB-family protein [Roseobacter sp.
           SK209-2-6]
          Length = 472

 Score =  331 bits (850), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 122/458 (26%), Positives = 201/458 (43%), Gaps = 41/458 (8%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           + S GC   + DS R+     ++GY        AD +++NTC   + A  +    +G   
Sbjct: 35  MVSLGCPKALVDSERILTRLRAEGYGISPDYAGADAVIVNTCGFLDSAKAESLDAIGEA- 93

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
            LK +         V+V GC+  AE + I    P ++ V GP  Y ++ + +  A     
Sbjct: 94  -LKENGK-------VIVTGCLG-AEPDYIREHHPRIHAVTGPHQYEQVLDAVHSA----- 139

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
                 S     + L     G        ++L I EGC+  C FC++P  RG   SR + 
Sbjct: 140 ---VPPSPNPYVDLLPAA--GVKLTPRHFSYLKISEGCNHKCKFCIIPDMRGKLASRPVH 194

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYSLSEIKG- 259
            V+ EA KL+D GV E+ ++ Q+ +A+            GE  +    DL   L ++   
Sbjct: 195 AVLREADKLVDAGVRELLVISQDTSAYGLDRKYSTHDWKGEEVRSHILDLSRELGKLAPA 254

Query: 260 ---LVRLRYTTSHPRDMSDCLIKAHGDLDV-LMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
               VRL Y   +P      LI    D D  L+PYL +P Q     +L+ M R   A + 
Sbjct: 255 DELWVRLHYVYPYPHV--RELIPLMADPDNALLPYLDIPFQHAHPDVLRRMARPAAAAKT 312

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
              I+  R   PDI + S FIVG+PGET+ +F+  +D +D+    +   FKY    G   
Sbjct: 313 LDEINAWRDTCPDITLRSTFIVGYPGETEAEFQHLLDWMDEAQLDRVGCFKYENVDGARS 372

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK---GKLVGRS 432
           +++ + V E VK ER     +K +    +  +A VGQ ++V+++    +     +    +
Sbjct: 373 NDLPDHVPEEVKQERWERFMEKAQAISEAKLEAKVGQTMQVIVDDIDGDGIATCRTKADA 432

Query: 433 PWLQSVVLNS---KNHNIGDIIKVRITDVKISTLYGEL 467
           P +   +      +   +GDI+ V + +     L+G L
Sbjct: 433 PEIDGNLFIDEGVEELKLGDIVTVEVDEAGEYDLWGTL 470


>gi|189499918|ref|YP_001959388.1| MiaB-like tRNA modifying enzyme YliG [Chlorobium phaeobacteroides
           BS1]
 gi|238065323|sp|B3EPX5|RIMO_CHLPB RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|189495359|gb|ACE03907.1| MiaB-like tRNA modifying enzyme YliG [Chlorobium phaeobacteroides
           BS1]
          Length = 442

 Score =  331 bits (850), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 115/464 (24%), Positives = 194/464 (41%), Gaps = 36/464 (7%)

Query: 13  MVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHI 72
           M     +     +  F+ S GC  N  DS R+      +G    N  D+AD++++NTC  
Sbjct: 1   MPENSPETMTRNRSIFLLSLGCSKNTVDSERLIGQARRKGLSFTNEPDEADIVIINTCGF 60

Query: 73  REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT 132
              A  +    +      +    K G    + V GC++     E+    P V+   G   
Sbjct: 61  IADAKTESIDEILAAAEKR----KNGEIEALYVMGCLSALYAAELRAELPEVDRFFGTAD 116

Query: 133 YYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTF 192
               PE+L        ++ T Y    +FER  +    Y       A+L + EGC + C+F
Sbjct: 117 L---PEILN-------ILGTAYDPATRFERSLLSPSHY-------AWLKLSEGCSRTCSF 159

Query: 193 CVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLY 252
           C +P  RG   S S+  ++ EA +L   GV E+ L+ Q++    G  L G     +DL+ 
Sbjct: 160 CAIPKMRGRYKSESMEDLLQEATRLKAKGVKELNLIAQDIT-PYGLDLYG-TSRLNDLMR 217

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
            LS++     +R   ++P D    +I    + + +  YL +PVQ   DRIL SM R    
Sbjct: 218 ELSDLNFD-WIRLLYAYPLDFPLEVIDTMRERENICDYLDMPVQHICDRILASMKRGIDK 276

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
                +++ IR   P+I + +  IVG+PGET  +F   +  V +  + +   F YS    
Sbjct: 277 QGTIGLLESIRKRNPNIRLRTTMIVGYPGETRAEFEELLQFVREFRFDRLGCFPYSHEEH 336

Query: 373 TPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR 431
           T    N+ + + E  K ER+  L +         N A   + ++VL+E+   E      R
Sbjct: 337 TAAYDNLEDDIPEEEKQERVGELMELQEGISEKKNRALEEKALKVLVEEV--EDNLAFAR 394

Query: 432 SPWLQSVVLNSK--------NHNIGDIIKVRITDVKISTLYGEL 467
           +    +  ++++        +   GD     I +     L G +
Sbjct: 395 T-EYDAPEVDNECVLDTAGIDIRPGDFCMATIEESSAYELVGRI 437


>gi|255034257|ref|YP_003084878.1| MiaB-like tRNA modifying enzyme [Dyadobacter fermentans DSM 18053]
 gi|254947013|gb|ACT91713.1| MiaB-like tRNA modifying enzyme [Dyadobacter fermentans DSM 18053]
          Length = 442

 Score =  331 bits (850), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 121/433 (27%), Positives = 211/433 (48%), Gaps = 17/433 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++    + GC++N  +S  +  MF  +GY +V   ++ D+ ++NTC + E A +K    +
Sbjct: 2   KKVAFYTLGCKLNYSESSSIGRMFEDKGYTKVEFNENPDIFIINTCSVTENADKKCRKIV 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL---E 141
              +       K   D  V + GC AQ + +EI    P V+ V+G    +RL EL+   E
Sbjct: 62  REAQ-------KINADGYVAIIGCYAQLKPKEI-SEIPGVDAVLGAAEKFRLVELIDTFE 113

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           +A  G+       +++   E  +     Y+       FL +Q+GCD  C +C +P  RG 
Sbjct: 114 KAPSGQPAQVIASTIDHAVEYHT----SYSLNDRTRTFLKVQDGCDYPCAYCTIPLARGK 169

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
             S S+  +V  AR +    V EI L G N+  + G      + TF DL+ +L E++G+ 
Sbjct: 170 SRSDSIENIVKAARDIAARDVKEIVLTGVNIGDF-GLRNGVREETFLDLVKALDEVEGIE 228

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R R ++  P  ++D +I+         P+ H+P+QSGS+++L  M RR+    Y + + +
Sbjct: 229 RFRISSIEPNLLTDEIIEFVAQSKRFAPHFHIPLQSGSNKVLGLMKRRYKRELYTERVAK 288

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I+S+ PD  I  D IVG PGET + F  T   ++++  +    F YS R  T    +   
Sbjct: 289 IKSLMPDCCIGVDVIVGHPGETKELFEETYHFLNELEVSYLHVFTYSERENTAALAIRPI 348

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           V++  +AER   L     +++  F +  +G+  +VL E    + G+++G +     V + 
Sbjct: 349 VNKGERAERSKMLHILSDKKKRFFYETQIGKEGKVLFEDEV-QNGQMLGFTGNYVRVAVK 407

Query: 442 SKNHNIGDIIKVR 454
                I +  +VR
Sbjct: 408 YDPLLINETKEVR 420


>gi|86136887|ref|ZP_01055465.1| MiaB-like tRNA modifying enzyme [Roseobacter sp. MED193]
 gi|85826211|gb|EAQ46408.1| MiaB-like tRNA modifying enzyme [Roseobacter sp. MED193]
          Length = 418

 Score =  331 bits (850), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 126/438 (28%), Positives = 201/438 (45%), Gaps = 37/438 (8%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
            P+     + GC++N Y++  M+++  + G E        DL+V+NTC +  +A  K   
Sbjct: 3   APK---FTTLGCRLNAYETEAMKELSQAAGLE--------DLVVVNTCAVTAEAVRKSRQ 51

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            + R+R       ++     +VV GC AQ E E    +   V+ V+G     +       
Sbjct: 52  EIRRLR-------RDNPQARIVVTGCAAQTEPET-FAQMEEVDTVLGNTEKMQPETWNGM 103

Query: 143 A-----RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197
           A        K  VD   SV +    L  +DG   R R   A++ +Q GCD  CTFC++PY
Sbjct: 104 AANFIGETEKVQVDDIMSVTETAGHL--IDGFGTRSR---AYVQVQNGCDHRCTFCIIPY 158

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257
            RG   S     VVD+ ++L+D G  E+ L G ++ +W G  L         ++  L  +
Sbjct: 159 GRGNSRSVPAGVVVDQIKRLVDRGYNEVVLTGVDLTSW-GADLPTTPKLGDLVMRILKLV 217

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
             L RLR ++    ++ + L++A      LMP+LHL +Q G D ILK M RRH   +  +
Sbjct: 218 PDLPRLRISSIDSIEVDENLMQAIATEPRLMPHLHLSLQHGDDMILKRMARRHLREDAIR 277

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
             +    +RP++   +D I GFP ET+  F  ++ LV+         F YS R GTP + 
Sbjct: 278 FTEEALKLRPEMTFGADIIAGFPTETEAHFENSLKLVEDCQLTWLHVFPYSKRDGTPAAK 337

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQS 437
           + +QV+ N+   R   L+     +  S   A +G+  +VL+E         +GR+     
Sbjct: 338 IPKQVNGNIIKSRAARLRAAGEARVQSHLAAQIGKTHQVLMENP------HMGRTEQFTE 391

Query: 438 VVLNSKNHNIGDIIKVRI 455
           V   S     G I+   I
Sbjct: 392 VSFASPQQE-GQIVTAMI 408


>gi|218128607|ref|ZP_03457411.1| hypothetical protein BACEGG_00177 [Bacteroides eggerthii DSM 20697]
 gi|317475589|ref|ZP_07934851.1| MiaB-like tRNA modifying enzyme [Bacteroides eggerthii 1_2_48FAA]
 gi|217989209|gb|EEC55523.1| hypothetical protein BACEGG_00177 [Bacteroides eggerthii DSM 20697]
 gi|316908293|gb|EFV29985.1| MiaB-like tRNA modifying enzyme [Bacteroides eggerthii 1_2_48FAA]
          Length = 443

 Score =  331 bits (850), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 115/424 (27%), Positives = 197/424 (46%), Gaps = 17/424 (4%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N  ++  +  +    G       + AD+ V+NTC + E A +K    + R+   
Sbjct: 16  TLGCKLNFSETSTIGKILREAGVRTARKGEKADICVVNTCSVTEVADKKCRQAIHRL--- 72

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               +K+     VVV GC AQ + + ++ +   V+VV+G +    L   L   +  +   
Sbjct: 73  ----VKQHPGAFVVVTGCYAQLKPD-VVAKIEGVDVVLGAEQKKDLLRYLGDLQKHE--- 124

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
            T  +     + +       +R      FL +Q+GCD +C++C +P+ RG   + S++ +
Sbjct: 125 -TGEAYTSALKDIRSFAPSCSRGDRTRFFLKVQDGCDYYCSYCTIPFARGRSRNGSVASL 183

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270
           V++AR+    G  EI L G N+    G        TF DL+ +L E++G+ R R ++  P
Sbjct: 184 VEQARQAAAEGGKEIVLTGVNI----GDFGKTTGETFFDLVKALDEVEGIERYRISSIEP 239

Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330
             ++D +I+        MP+ H+P+QSGSD +LK M RR+    +   + +I+ V PD  
Sbjct: 240 NLLTDEIIEFVSRSKRFMPHFHIPLQSGSDEVLKLMRRRYDTALFASKVKKIKEVMPDAF 299

Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER 390
           I  D IVG  GET++ F      +  +   Q   F YS R GT    +   V    K  R
Sbjct: 300 IGVDVIVGTRGETEEYFEQAYRFIQGLDVTQLHVFSYSERPGTQALKIEHVVSSEEKHRR 359

Query: 391 LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDI 450
              L +   E+  SF    +GQ + VL+E+  K    + G +P    V +   +     +
Sbjct: 360 SQLLLELSEEKTRSFYARHIGQTMPVLLER-SKPGTPMHGFTPNYIRVEVPHDDALDNRV 418

Query: 451 IKVR 454
           +  R
Sbjct: 419 VPAR 422


>gi|254465076|ref|ZP_05078487.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Rhodobacterales
           bacterium Y4I]
 gi|206685984|gb|EDZ46466.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Rhodobacterales
           bacterium Y4I]
          Length = 471

 Score =  331 bits (850), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 120/461 (26%), Positives = 204/461 (44%), Gaps = 47/461 (10%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           + S GC   + DS R+     ++GY        AD +++NTC   + A  +    +G   
Sbjct: 35  MVSLGCPKALVDSERILTRLRAEGYGISPDYAGADAVIVNTCGFLDSAKAESLEAIGEA- 93

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
            LK +         V+V GC+  AE + I    P ++ V GP  Y ++ + +  A     
Sbjct: 94  -LKENGK-------VIVTGCLG-AEPDYIREHHPRIHAVTGPHQYEQVLDAVHSA----- 139

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
                 S     + L     G        ++L I EGC+  C FC++P  RG   SR + 
Sbjct: 140 ---VPPSPNPYVDLLPAT--GVRLTPRHFSYLKISEGCNHKCKFCIIPDMRGKLASRPVH 194

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYSLSEI 257
            V+ EA KL++ GV E+ ++ Q+ +A           W+G+ +   +    DL   L ++
Sbjct: 195 AVLREAEKLVEAGVRELLVISQDTSAYGLDRKYSAHPWKGEDV---RSHILDLSRELGKL 251

Query: 258 KG----LVRLRYTTSHPRDMSDCLIKAHGDLDV-LMPYLHLPVQSGSDRILKSMNRRHTA 312
                  VRL Y   +P      LI    D +  L+PYL +P Q     +L+ M R   A
Sbjct: 252 APAEDLWVRLHYVYPYPHV--RELIPLMADPENALLPYLDIPFQHAHPDVLRRMARPAAA 309

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
            +    I+  R+  PDI + S FIVGFPGET+ +F+  +D +D+    +   FKY    G
Sbjct: 310 AKTLDEINAWRATCPDITLRSTFIVGFPGETEAEFQHLLDWMDEAQLDRVGCFKYENVDG 369

Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK---GKLV 429
              +++ + V E VK ER     +K +    +   A VGQ ++V+++   ++     +  
Sbjct: 370 ARSNDLPDHVPEEVKQERWERFMEKAQAISEAKLAAKVGQTMQVIVDDIDEDGIATCRTK 429

Query: 430 GRSPWLQSVVLNS---KNHNIGDIIKVRITDVKISTLYGEL 467
             +P +   +      +    GD++ V + +     L+G+L
Sbjct: 430 ADAPEIDGNLFIDEGTEGLQAGDLVTVEVDEAGEYDLWGKL 470


>gi|311898714|dbj|BAJ31122.1| hypothetical protein KSE_53470 [Kitasatospora setae KM-6054]
          Length = 490

 Score =  331 bits (850), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 122/481 (25%), Positives = 205/481 (42%), Gaps = 45/481 (9%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +   + + GC  N  DS  +     + G+  V+   +AD+ V+NTC   E A +     L
Sbjct: 5   RTVALVTLGCARNEVDSEELAGRLEADGWRLVDDASEADVAVVNTCGFVEAAKKDSVDAL 64

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
               +LK      G    VV  GC+A+  G+E+    P  + V+G   Y  +   L    
Sbjct: 65  LEANDLKG----HGRTQAVVAVGCMAERYGKELADALPEADGVLGFDDYADISSRLNTIL 120

Query: 145 FGKRV---------------------------VDTDYSVEDKFERLSIVDGGYNRKRG-- 175
            G  V                           +    + ED  + ++   G    ++   
Sbjct: 121 SGGHVEAHTPRDRRKLLPLTPVERQAAAAEVALPGHGAPEDLPDGVAPASGPRTLRKRLD 180

Query: 176 --VTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVN 233
               A + +  GCD+ C+FC +P  RG  ISR  S V++EA  L   GV E+ L+ +N N
Sbjct: 181 DAPVASIKLASGCDRRCSFCAIPAFRGSFISRRPSDVLNEAVWLAGQGVREVVLVSEN-N 239

Query: 234 AWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHL 293
              GK L G+      LL  ++ + G+ R+R +   P +M   LI      D ++PY  L
Sbjct: 240 TSYGKDL-GDIRLLETLLSEIAAVDGIERVRVSYLQPAEMRPGLIDVMTGTDKVVPYFDL 298

Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
             Q  +  +L+ M R  +  ++  +++ IR+  P+    S+FIVGFPGE+++D+      
Sbjct: 299 SFQHSAPAVLRRMRRFGSTEQFLGLLESIRAKAPEAGARSNFIVGFPGESEEDYAELERF 358

Query: 354 VDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQI 413
           V   G      F YS   GT  +    ++D++V  +R+  L K   E      +  +G  
Sbjct: 359 VIHAGLDAIGVFGYSDEDGTEAAGYDGKLDQDVVDDRVARLSKLAEELTAQRAEQRIGSK 418

Query: 414 IEVLIEKHGKEKGKLVGRS----PWLQSV--VLNSKNHNIGDIIKVRITDVKISTLYGEL 467
           + VL+E    E G + GRS    P    +  +L + +  +G   +  +T  +   L  E 
Sbjct: 419 VTVLVE--SVEDGVVEGRSAHQAPETDGLTTLLGAPDAVVGRFYRAVVTGTEGVDLVAEA 476

Query: 468 V 468
           +
Sbjct: 477 I 477


>gi|297156762|gb|ADI06474.1| hypothetical protein SBI_03353 [Streptomyces bingchenggensis BCW-1]
          Length = 521

 Score =  331 bits (849), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 129/508 (25%), Positives = 209/508 (41%), Gaps = 72/508 (14%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +   + + GC  N  DS  +     + G+E V    DAD+ V+NTC   E A +     L
Sbjct: 5   RTVALVTLGCARNEVDSEELAGRLAADGWELVEEAADADVAVVNTCGFVEAAKKDSVDAL 64

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
               +LK+     G    VV  GC+A+  G+E+    P  + V+G   Y  + + L+   
Sbjct: 65  LEANDLKD----HGRTQAVVAVGCMAERYGKELAEALPEADGVLGFDDYAHISDRLQTIL 120

Query: 145 FGKRVVDTDYSVEDKFERLSI--------------------------------------- 165
            G   +   ++  D+ + L I                                       
Sbjct: 121 SGG--IHASHTPRDRRKLLPISPAERQGAAEVALPGHAQAEAAPEDLPAPEDLPAGVAPA 178

Query: 166 --VDGGYNRKRG--VTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNG 221
                   R+ G    A + +  GCD+ C+FC +P  RG  ISR  S V+ E R L + G
Sbjct: 179 SGPRAPLRRRLGSSPVASVKLASGCDRRCSFCAIPSFRGSFISRRPSDVLGETRWLAEQG 238

Query: 222 VCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAH 281
           V EI L+ +N N   GK L G+      LL  L+ + G+ R+R +   P +M   LI   
Sbjct: 239 VKEIMLVSEN-NTSYGKDL-GDIRLLETLLPELAAVDGIERIRVSYLQPAEMRPGLIDVL 296

Query: 282 GDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPG 341
              + + PY  L  Q  +  +L++M R      + +++DRIR+  P   + S+FIVGFPG
Sbjct: 297 TSTEKVAPYFDLSFQHSAPSVLRAMRRFGDTDRFLELLDRIRAKAPQAGVRSNFIVGFPG 356

Query: 342 ETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQ 401
           ET+DD       +          F YS   GT  +   ++VD +  AERL  + +   E 
Sbjct: 357 ETEDDLAELERFLGAARLDAIGVFGYSDEEGTEAATYEDKVDPDEVAERLAHISRLAEEL 416

Query: 402 QVSFNDACVGQIIEVLIEKHG------------KEKGKLVGR----SPWLQS-----VVL 440
                +  +G ++EV++E+ G            +  G LVGR    +P         V  
Sbjct: 417 TAQRAEERLGDVVEVMVEESGDAHVAEDTDGADEGAGSLVGRAAHQAPETDGQTLLTVSG 476

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
                 +G ++  ++   +   L  E++
Sbjct: 477 TGPVPAVGQLVTAKVVATEGVDLVAEVL 504


>gi|317503044|ref|ZP_07961124.1| Fe-S oxidoreductase [Prevotella salivae DSM 15606]
 gi|315665844|gb|EFV05431.1| Fe-S oxidoreductase [Prevotella salivae DSM 15606]
          Length = 446

 Score =  331 bits (849), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 117/437 (26%), Positives = 204/437 (46%), Gaps = 17/437 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++    + GC++N  ++     M    G   V+  + AD+ ++NTC + E A  K    +
Sbjct: 10  KKATYYTLGCKLNFSETSTFGKMLSDMGVVTVDKGEKADICLINTCSVTEVADHKCRQAI 69

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R+        +E     ++V GC AQ E E++  + P V++V+G      L + L  A 
Sbjct: 70  HRMA-------RENPGAFIIVTGCYAQLESEKV-SKIPGVDLVLGSNEKANLIQYLNDAF 121

Query: 145 FGKRVVDTDYSVED-KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             +   +T +     K + +       ++      FL +Q+GC+ FCT+C +PY RG   
Sbjct: 122 TKRETGETLHQFHSVKTKDIKTFQASCSKGNRTRYFLKVQDGCNYFCTYCTIPYARGFSR 181

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           + ++S ++ +A +    G  EI L G N+    G   +     F DL+ +L +++G+ R 
Sbjct: 182 NPTISSLIKQAEEAAAEGGKEIVLTGVNI----GDFGETTHERFIDLVKALDKVEGIKRF 237

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R ++  P  + D LI    +    MP+ H+P+QSGSD +LK M+RR+    +   I  I+
Sbjct: 238 RISSLEPDLIDDELIAFCAESRAFMPHFHIPLQSGSDTVLKLMHRRYDTSLFAHKIKLIK 297

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
            + PD  I  D +VG  GE  + F    + ++++   Q   F YS R GT    +   V+
Sbjct: 298 ELMPDAFIGVDVMVGCRGEKPEYFEECYNFLEQLPITQLHVFPYSERPGTSALAIPYVVN 357

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN-- 441
           E  K  R   L +   ++   F    +G   EVL EK  + K  + G +     V L   
Sbjct: 358 EKDKKLRSKRLLELSDKKTQLFYQKFIGSEREVLFEKAPRGKA-MHGFTDNYIRVELPAS 416

Query: 442 -SKNHNIGDIIKVRITD 457
            +K     ++I+V++ D
Sbjct: 417 LAKEEYDNELIRVKLGD 433


>gi|85704067|ref|ZP_01035170.1| MiaB-like tRNA modifying enzyme [Roseovarius sp. 217]
 gi|85671387|gb|EAQ26245.1| MiaB-like tRNA modifying enzyme [Roseovarius sp. 217]
          Length = 423

 Score =  331 bits (849), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 124/446 (27%), Positives = 207/446 (46%), Gaps = 37/446 (8%)

Query: 17  IVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA 76
           + +Q I   +F   + GC++N Y++  M+++    G +        + +++NTC +  +A
Sbjct: 1   MSEQRIGAPKF--TTLGCRLNAYETEAMKELAGQAGLD--------NAVIVNTCAVTSEA 50

Query: 77  AEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL 136
             K    + R+R       +E  +  ++V GC AQ E E      P V+ V+G       
Sbjct: 51  VRKARQEIRRLR-------RENPEARLIVTGCAAQTEPETFAA-MPEVDAVIGNTEKMSP 102

Query: 137 PELLERA-----RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCT 191
                 A        + +VD   SV +    L  +DG  +R R   A++ +Q GCD  CT
Sbjct: 103 ATWGRLAGDFIGETERVLVDDIMSVRETAGHL--IDGFGSRSR---AYVQVQNGCDHRCT 157

Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLL 251
           FC++P+ RG   S     VV++ ++L+  G  E+ L G ++ +W G  L         ++
Sbjct: 158 FCIIPFGRGNSRSVPAGVVVEQIKRLVGAGYNEVVLTGVDLTSW-GADLPATPKLGDLVM 216

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
             L  +  L RLR ++    ++ + L++A      LMP+LHL +Q G D ILK M RRH 
Sbjct: 217 RILRLVPDLPRLRISSIDSIEVDENLMQAIATEPRLMPHLHLSLQHGDDLILKRMKRRHL 276

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
             +  +  +  R +RP++   +D I GFP ET+  F  ++ LV+         F YSPR 
Sbjct: 277 REDAIRFAEEARRLRPEMTFGADIIAGFPTETEAHFENSLRLVEDCHLTWLHVFPYSPRP 336

Query: 372 GTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR 431
           GTP + M  QV+     +R   L+     +  +   A  G+   VL+E         +GR
Sbjct: 337 GTPAARMP-QVNGRSIKDRAARLRAAGEARVAAHLAAQHGREHAVLMEAP------RMGR 389

Query: 432 SPWLQSVVLNSKNHNIGDIIKVRITD 457
           +     VV +S     G I++ R+T 
Sbjct: 390 TEQFTEVVFDSDRPE-GQIVRARVTG 414


>gi|160940888|ref|ZP_02088228.1| hypothetical protein CLOBOL_05780 [Clostridium bolteae ATCC
           BAA-613]
 gi|158436132|gb|EDP13899.1| hypothetical protein CLOBOL_05780 [Clostridium bolteae ATCC
           BAA-613]
          Length = 453

 Score =  331 bits (849), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 116/423 (27%), Positives = 204/423 (48%), Gaps = 19/423 (4%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           +P +  + + GC++N Y++  M+     +GYE V     AD+ ++NTC +   A  K   
Sbjct: 1   MP-KAALHNLGCKVNAYETEAMQQQLEERGYEIVPFDQKADVYIINTCSVTNIADRKSRQ 59

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            L R + L         + +VV AGC  Q   + + +    V+++VG     RL ++LE 
Sbjct: 60  MLHRAKKL-------NPEAVVVAAGCYVQVASDAL-KEDDSVDIIVGNNNKARLADILEE 111

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
               ++  +  Y ++    R               AF+ +Q+GC++FC++C++PY RG  
Sbjct: 112 YMKDRQGDEGGYVLDIARAREYEELHVSRLGEHTRAFIKVQDGCNQFCSYCIIPYARGRV 171

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT--------FSDLLYSL 254
            SR    V  E + L+  G  E+ L G +++++  + ++G              DL+  +
Sbjct: 172 RSRKPEDVEAEVKGLVARGYREVVLTGIHLSSYGTEHMEGSPVKGGDWDSGPLWDLIERI 231

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
             ++GL R+R  +  PR ++    +    L    P+ HL +QSG D  LK MNR +T  +
Sbjct: 232 HRVEGLERIRLGSLEPRIITREFAEKLAGLPEFCPHFHLSLQSGCDATLKRMNRHYTTED 291

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
           Y +    +R +    AI++D I GFPGET+++F  T   ++ + + +   FKYS R GT 
Sbjct: 292 YLRRCGILREIFDHPAITTDVIAGFPGETEEEFEETRRFLETVRFYEMHVFKYSKRQGTR 351

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG--KLVGRS 432
            + M +QV E VKA R   L +  +     + +   G  + VL E+  +  G   ++G +
Sbjct: 352 AAVMEDQVSEQVKARRSDVLLELEKTMSREYRERFAGSRVSVLFEEAAEIGGKWYMMGHT 411

Query: 433 PWL 435
           P  
Sbjct: 412 PQY 414


>gi|291436894|ref|ZP_06576284.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
 gi|291339789|gb|EFE66745.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
          Length = 491

 Score =  331 bits (849), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 131/481 (27%), Positives = 206/481 (42%), Gaps = 44/481 (9%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +   + + GC  N  DS  +     + G+  V    +AD+ V+NTC   E A +     L
Sbjct: 5   RTVALVTLGCARNEVDSEELAGRLEADGWRLVEDAAEADVAVVNTCGFVEAAKKDSVDAL 64

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL---- 140
               +LK      G    VV  GC+A+  G+E+    P  + V+G   Y  + + L    
Sbjct: 65  LEANDLKE----HGRTQAVVAVGCMAERYGKELAEALPEADGVLGFDDYTDISDRLQTIL 120

Query: 141 ----------------------ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRG--- 175
                                 ER   G  V    +   D  E L+   G     R    
Sbjct: 121 SGGIHASHTPRDRRKLLPLSPVERQAAGASVALPGHGPADLPEGLAPASGPRAPLRRRLD 180

Query: 176 --VTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVN 233
               A + +  GCD+ C+FC +P  RG  ISR  S V++E R L + GV EI L+ +N N
Sbjct: 181 GSPVASVKLASGCDRRCSFCAIPSFRGSFISRRPSDVLNETRWLAEQGVKEIMLVSEN-N 239

Query: 234 AWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHL 293
              GK L G+      LL  L+E+ GL R+R +   P +M   LI        + PY  L
Sbjct: 240 TSYGKDL-GDIRLLESLLPELAEVDGLERVRVSYLQPAEMRPGLIDVLTSTPKVAPYFDL 298

Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
             Q  +  +L++M R      + +++D IRS  P   + S+FIVGFPGE++ D       
Sbjct: 299 SFQHSAPGVLRAMRRFGDTDRFLELLDTIRSRAPQAGVRSNFIVGFPGESEADLAELERF 358

Query: 354 VDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQI 413
           ++         F YS   GT  +    +++E+V AERL  + +   E      D  VG+ 
Sbjct: 359 LNHARLDAIGVFGYSDEEGTEAATYDTKLEEDVVAERLARVSRLAEELVSQRADERVGET 418

Query: 414 IEVLIEKHGKEKGKLVGR----SPWLQSVVL--NSKNHNIGDIIKVRITDVKISTLYGEL 467
           + VL+E   +E+G + GR    +P     VL  +     +G +++ ++   +   L  E 
Sbjct: 419 VHVLVESVDEEEG-VHGRAAHQAPETDGQVLLTSGGGVGVGRMVEAKVVGTEGVDLVAEP 477

Query: 468 V 468
           +
Sbjct: 478 L 478


>gi|188586422|ref|YP_001917967.1| RNA modification enzyme, MiaB family [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179351109|gb|ACB85379.1| RNA modification enzyme, MiaB family [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 451

 Score =  331 bits (849), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 124/455 (27%), Positives = 218/455 (47%), Gaps = 33/455 (7%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDD-ADLIVLNTCHIREKAAEKVYSF 83
           + F + + GC +N  +S  M       GY    + DD AD+ ++N+C + + AA K    
Sbjct: 8   KSFKIITLGCPLNQSESDLMRARLHQAGYSETGTGDDTADIYIINSCTVTQNAARKSRKE 67

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
             + +       K   D  V + GC  + E EEI  + P +++++G +   +  E L   
Sbjct: 68  ARKAK-------KGNPDAWVCLVGCYGEMEYEEIKEKIPEIDLIIGTRNREKAIEKL--- 117

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
                       ++         D    R   +   + IQEGCD+ C++C+V   RG   
Sbjct: 118 --------VGQELDLNQFHNFPQDNNEIRPDKIRPAIKIQEGCDQSCSYCIVTLARGRPK 169

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG---EKCTFSDLLYSLSEIK-- 258
           SR   Q+  + +  ++ G  EI L G N+    GK + G       F DL   +SE+   
Sbjct: 170 SREFRQIKQQVKSYLEEGYQEIILAGTNMG-LYGKDVKGQSKHSYKFIDLPMLVSELATL 228

Query: 259 --GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
                R+R ++  P +M++ L+ A  + D +  YL+LP+QSGSDRILK MNR++T  ++ 
Sbjct: 229 PYDDYRIRISSLEPLEMTEELLYAMKEHDKICNYLYLPLQSGSDRILKLMNRKYTTDDFA 288

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
           +I+++ +++ P + I +D IVGFPGE ++D +ATM+ V+++  ++   F YSPR  T  +
Sbjct: 289 RIVEKAKTLLPGVGIMTDLIVGFPGEKEEDHKATMEFVEELKLSKLHVFPYSPRPKTLAA 348

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV--GRSPW 434
           +   QV  ++K  R   +++  ++    F    +   + VL E++ +   K++  G S  
Sbjct: 349 SFNVQVRPDIKRARTEEMKELGQKLARRFYQENLNTRLRVLYERNYETSDKILGEGFSEN 408

Query: 435 LQSVVLNSKNHNI----GDIIKVRITDVKISTLYG 465
              V   +K  N+    G+ + V         L G
Sbjct: 409 YCLVRFETKGTNLTNKKGEFVNVISHQNYDWGLMG 443


>gi|149199462|ref|ZP_01876497.1| putative Fe-S oxidoreductase [Lentisphaera araneosa HTCC2155]
 gi|149137397|gb|EDM25815.1| putative Fe-S oxidoreductase [Lentisphaera araneosa HTCC2155]
          Length = 437

 Score =  331 bits (849), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 127/453 (28%), Positives = 217/453 (47%), Gaps = 20/453 (4%)

Query: 17  IVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA 76
              + +  ++  V + GC++N  +S  ME     QG++ V+   ++++ ++NTC +  +A
Sbjct: 2   TPTENLETKKASVYTLGCRLNQSESSVMEQGLKEQGFDIVDFKGESNIAIVNTCTVTARA 61

Query: 77  AEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL 136
                + +        S I+   D  V V GC +Q  G + L     V++++G Q    +
Sbjct: 62  DSDCRNVIR-------SYIRRNPDAFVAVVGCYSQ-MGYKTLAEIEGVDLIIGNQDKMSV 113

Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
            + ++  +  K ++  D  V++ F     +D          A L IQ+GCD  CTFC++P
Sbjct: 114 LDYVKMGKNEKPLIIRDRIVKEDF----TIDTMGQSDSKTRANLKIQDGCDFMCTFCIIP 169

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256
             RG   SR +  +++EAR LI  G  EI + G NV  +     D +  TF D++  L+E
Sbjct: 170 MARGRSRSRDMENLLEEARTLIGQGFREIVITGVNVATY-----DSQGRTFLDVIDRLNE 224

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDV-LMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
           ++G+ R+R ++  P  + + +     D +  L+PYLH+P+QSGSD++LK M RR+   E+
Sbjct: 225 LEGIERIRISSIEPTTIPEKIFDYMADPNHALVPYLHIPLQSGSDKVLKIMKRRYERQEF 284

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
              I       PD+ I +D +VG  GE + +F  T D + K        F +S R GTP 
Sbjct: 285 LDFIKMASERVPDLCIGTDVMVGMCGEDEKEFEDTCDFLIKSPVNYFHVFTFSERDGTPA 344

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWL 435
             M E+V    K+ R   L+     +++ F +  +G+  +VL E      G   G +   
Sbjct: 345 VKMEEKVHPKEKSHRSSVLRAISERKRLKFYNDYIGREFDVLFE--SGHDGLWTGYTENF 402

Query: 436 QSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
             V +    +    I +V+IT         ELV
Sbjct: 403 IRVSVEYPGNLSRHIRRVKITHTVADFAMAELV 435


>gi|134102329|ref|YP_001107990.1| hypothetical protein SACE_5882 [Saccharopolyspora erythraea NRRL
           2338]
 gi|238066583|sp|A4FLZ0|RIMO_SACEN RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|133914952|emb|CAM05065.1| hypothetical protein SACE_5882 [Saccharopolyspora erythraea NRRL
           2338]
          Length = 484

 Score =  331 bits (849), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 121/472 (25%), Positives = 207/472 (43%), Gaps = 47/472 (9%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +R  + + GC  N  DS  +      +G++ ++    AD++V+NTC   E A +     L
Sbjct: 8   RRVAMVTLGCARNEVDSEELAGNLHQRGWDLIDDESSADVVVVNTCGFVESAKKDSVDTL 67

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
               +             VV  GC+A+  G E+    P  + V+G   Y  L E L+   
Sbjct: 68  LAASD---------TGAKVVAVGCMAERYGAELAEHLPEADAVLGFDHYGNLAERLDDVL 118

Query: 145 FGKRVVDTDYSVEDKFERLSIVD-----------------GGYNRKRG---------VTA 178
            G+ +    +  +D+ + L I                   G     RG           A
Sbjct: 119 AGRAI--QPHQPQDRRKMLPITPVARPAAAAASEVAVPGHGWVPSTRGIARRRLDDSPLA 176

Query: 179 FLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK 238
            L +  GCD+ C+FC +P  RG  +SR   +V+ EA  L + G  E+ L+ +N  +  GK
Sbjct: 177 ALKLASGCDRRCSFCAIPSFRGSFLSRQPEEVLGEAAWLAEQGAKELFLVSENSTS-YGK 235

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
            L  +      LL  L+ I G+ R+R +   P +    L++A      + PY  L  Q  
Sbjct: 236 DLS-DPRALETLLPRLAGIDGVDRVRVSYLQPAETRPGLVRAIATTPGVAPYFDLSFQHS 294

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           S+++L+ M R  +   +  +I++IR + P+  I S+ IVGFPGET++DF    D + +  
Sbjct: 295 SEKVLRRMRRFGSTESFLALIEQIRELAPEAGIRSNVIVGFPGETEEDFEELQDFLTRAR 354

Query: 359 YAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI 418
                 F YS   GT  +    ++D +V A R+  +     E      +  VG  + VL+
Sbjct: 355 LDAVGVFGYSDEDGTEAAGFDGKLDADVVAARVEQVSALADELVAQRAEDRVGTEVRVLV 414

Query: 419 EKHGKEKGKLVGRS----PWLQS--VVLNSKNHNIGDIIKVRITDVKISTLY 464
           E+   E G++ GR+    P +    VV+++    +G+++  R+   +   L 
Sbjct: 415 ER--DEDGEVTGRAEHQGPEVDGECVVVDAGGAGVGEVVHCRVIASEGVDLV 464


>gi|189183909|ref|YP_001937694.1| hypothetical protein OTT_1002 [Orientia tsutsugamushi str. Ikeda]
 gi|189180680|dbj|BAG40460.1| hypothetical protein OTT_1002 [Orientia tsutsugamushi str. Ikeda]
          Length = 423

 Score =  331 bits (849), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 113/440 (25%), Positives = 209/440 (47%), Gaps = 32/440 (7%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V ++GC++N Y+S  ++        +        +++V NTC + ++A  +    + + +
Sbjct: 15  VITFGCRLNAYESEIIKQNLKIANLD--------NVVVFNTCTVTQEAERQAKQAIRKAK 66

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
                  +E  ++ ++V GC AQ   + +  + P VN ++G +          +    K 
Sbjct: 67  -------RENPNIKIIVTGCAAQNNPD-LFNQMPQVNKILGNEEKLYPEFY--QFDENKI 116

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
            V+   S+++    +     G  R     AF+ +Q GC+  CTFC++PY RG   S  + 
Sbjct: 117 QVNDIMSIQETATHMISNFDGKTR-----AFIQVQNGCNHRCTFCIIPYARGNSRSVPIG 171

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
            +  + + LI+ G  EI   G ++ +  G  L G       +   L  +  L RLR ++ 
Sbjct: 172 VITQQIQLLINQGYKEIVFTGVDLTS-YGADLPGSPTLAQMIKRVLMLVPALPRLRLSSI 230

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
              ++   L K   D   LMP+ H+ +Q+G + ILK M RRHT  +  +  +++R + PD
Sbjct: 231 DIAEIDQELFKLMTDEPRLMPHFHISLQAGDNMILKRMKRRHTREQIIEFCNKMRKILPD 290

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
            +  +D I GFP ET+  F  +++L+ + G      F YS R  TP S M  QV ++++ 
Sbjct: 291 ASFGADMIAGFPTETEIMFNNSLNLISETGIQYLHVFPYSERENTPASKMP-QVQKHIRK 349

Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIG 448
           +R   L+ + ++Q   F    +G+I++VL+EK         G S       + +    IG
Sbjct: 350 KRAQLLRNEGKKQLQLFFQQQIGKIVKVLVEKEQ------FGHSENFIPTYI-ATRQTIG 402

Query: 449 DIIKVRITDVKISTLYGELV 468
           +I+ V++T +    + G +V
Sbjct: 403 EIVNVKLTSINNDHMIGTVV 422


>gi|255561612|ref|XP_002521816.1| radical sam protein, putative [Ricinus communis]
 gi|223539029|gb|EEF40626.1| radical sam protein, putative [Ricinus communis]
          Length = 630

 Score =  331 bits (848), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 123/462 (26%), Positives = 215/462 (46%), Gaps = 24/462 (5%)

Query: 9   GVAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLN 68
           G++   S +  +    Q  ++K++GC  N  DS  M     S GY   +  +D DL ++N
Sbjct: 46  GISLSQSLLSPKIPGTQTIYIKTFGCSHNQSDSEYMAGQLSSFGYALTDIPEDGDLWLIN 105

Query: 69  TCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVV 128
           TC ++  +   + + + + ++ K           +VVAGCV Q  G   L+    V++V 
Sbjct: 106 TCTVKSPSQSAMDTIIAKGKSAKKP---------LVVAGCVPQ--GSRNLKELEGVSIV- 153

Query: 129 GPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
           G Q   R+ E++E    G  V           + L  +D    RK      L I  GC  
Sbjct: 154 GVQQIDRVVEVVEETLKGHEVRLL------TRKTLPALDLPKVRKNKFVEILPINVGCLG 207

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS 248
            CT+C   + RG   S ++  +V   R ++ +GV EI L  ++  A  G+ +        
Sbjct: 208 ACTYCKTKHARGHLGSYTIDSLVGRVRTVVGDGVKEIWLSSEDTGA-YGRDIGVNLPRLL 266

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCL--IKAHGDLDVLMPYLHLPVQSGSDRILKSM 306
           + + S         LR   ++P  + + L  I        +  +LH+PVQSGSD +L +M
Sbjct: 267 NAIVSELPADASTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDNVLNAM 326

Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
           NR +T   +R ++D +  + P + I++D I GFPGETDDDF  T+ L+++    Q    +
Sbjct: 327 NREYTVSNFRTVVDTLTELVPGMQIATDIICGFPGETDDDFAQTVSLINEYKLPQVHISQ 386

Query: 367 YSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG 426
           + PR GTP + M ++V  N+  +R   L      +  +  +   G++  + I +   +  
Sbjct: 387 FYPRPGTPAARM-KKVPSNIVKKRSRELTAVF--EAFTPYNGMEGRVERIWITEIATDGI 443

Query: 427 KLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            LVG +     V++ +    +G    V+IT V   +++GE++
Sbjct: 444 HLVGHTKGYVQVLVIAPETMLGTSAIVKITSVGRWSVFGEVI 485


>gi|225574860|ref|ZP_03783470.1| hypothetical protein RUMHYD_02938 [Blautia hydrogenotrophica DSM
           10507]
 gi|225037934|gb|EEG48180.1| hypothetical protein RUMHYD_02938 [Blautia hydrogenotrophica DSM
           10507]
          Length = 447

 Score =  331 bits (848), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 122/435 (28%), Positives = 219/435 (50%), Gaps = 18/435 (4%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + +     + GC++N Y+   M+ +    GY+ V     AD+ ++NTC +   A  K   
Sbjct: 7   MSKTVAFHNLGCKVNAYELEAMQQILEKAGYQVVPFAPGADVYIINTCTVTNIADRKSRQ 66

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            L R +       K   + +VV AGC  QA+   +  +   ++++VG      +  LLE 
Sbjct: 67  MLHRAK-------KMNPEAVVVAAGCYVQADLPRL-EKDSAIDLIVGNNKKKDIVSLLEA 118

Query: 143 ARF--GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
                GK+    + +   ++E L I          V A++ +Q+GC++FCT+C++PYTRG
Sbjct: 119 YDKSRGKQECVININQTKEYEALEI----ETTAEHVRAYIKVQDGCNQFCTYCIIPYTRG 174

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
              SRS  +V  E  +L + G  E+ L G ++++  G     +  +  DL+ ++ ++ G+
Sbjct: 175 RVRSRSKDEVQKEVVRLANRGYHEVVLTGIHLSS-YGVDFKEQPDSLLDLIRAIHQVDGI 233

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R ++  P  +++  +K   +L  + P+ HL +QSG    L+ MNRR+TA EYR+  +
Sbjct: 234 TRIRLSSLEPGVITEEFVKGLAELWKVCPHFHLSLQSGCQTTLERMNRRYTAQEYREKCE 293

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
            +R    + A+++D IVGFP ET+++F  + + V  I + +   FK+S R GT    M  
Sbjct: 294 LLRRYYENPALTTDVIVGFPQETEEEFEESYEFVRDIRFYETHIFKFSRRKGTKADKMDG 353

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK--LVGRSPWLQSV 438
           QV E  KA R  C+      +   +  + +G+ +EVL+E+     G+  L+G S      
Sbjct: 354 QVPEQEKARRSGCMIALGERRAEEYEKSFLGKTLEVLLEEEISVDGQLYLIGHSREYIKA 413

Query: 439 VLNSKNH-NIGDIIK 452
            + S     + D ++
Sbjct: 414 AVPSDGSWKVNDCVQ 428


>gi|323100040|gb|ADX30521.1| MiaB-like protein 1 [Plutella xylostella]
          Length = 542

 Score =  331 bits (848), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 124/463 (26%), Positives = 205/463 (44%), Gaps = 28/463 (6%)

Query: 14  VSQIVDQCIVP--QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCH 71
           V +++ Q +VP  Q  +VK++GC  N  DS  M  +  +QGY+  +    A L +LN+C 
Sbjct: 48  VEKVILQSVVPGTQTIYVKTWGCAHNNSDSEYMVGLLAAQGYQLTDDKWSAQLWLLNSCT 107

Query: 72  IREKAAEKVYSFL--GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG 129
           ++  A E   + +  G+ R +            VVVAGCV Q               +VG
Sbjct: 108 VKNPAEEHFRNEIELGQARGIH-----------VVVAGCVPQGAPRAGYLAG---LSIVG 153

Query: 130 PQTYYRLPELLERARFGKRVVDTDYSVED--KFERLSIVDGGYNRKRGVTAFLTIQEGCD 187
                R+ E++E    G  V        D  K    + +     RK  +   + I  GC 
Sbjct: 154 VHQIDRIVEIVEETLKGHTVRLFGQKKTDDGKKAGGASLQLPKVRKNPLIEIIAINTGCL 213

Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTF 247
             CT+C   + RG   S    ++V+ AR+    GVCEI L  ++     G+ +       
Sbjct: 214 NQCTYCKTKHARGELGSYPPEEIVERARQSFKEGVCEIWLTSEDTGT-YGRDIGTSLPEL 272

Query: 248 SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKA--HGDLDVLMPYLHLPVQSGSDRILKS 305
            D    ++ I    RLR   ++P  M + L +         +  +LH+PVQSGSD++L  
Sbjct: 273 LDQP--VAAIPAGCRLRLGMTNPPYMLEHLPRVAGIMRHSRVYKFLHVPVQSGSDQVLAD 330

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           M R ++  ++  ++D +R   P I I++D I GFP ET  D   T+ L  +  +   F  
Sbjct: 331 MKREYSRKDFGYVVDYLRKEVPGITIATDIICGFPTETAADHELTVSLCRQYRFPSLFIN 390

Query: 366 KYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK 425
           ++  R GTP +NM  +V      +R   L +  R          VG+  EVL      +K
Sbjct: 391 QFFARPGTPAANMT-KVPGQEVKKRTKELSELFR--SYEPYGHKVGETQEVLDTDISHDK 447

Query: 426 GKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
              VG + + + V++  +   +G ++ V+IT     ++ GE +
Sbjct: 448 KYFVGHNEFYEQVLVPKEERYMGKMLTVKITSASKFSMMGEPI 490


>gi|299147882|ref|ZP_07040945.1| 2-methylthioadenine synthetase [Bacteroides sp. 3_1_23]
 gi|298514065|gb|EFI37951.1| 2-methylthioadenine synthetase [Bacteroides sp. 3_1_23]
          Length = 439

 Score =  331 bits (848), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 116/442 (26%), Positives = 207/442 (46%), Gaps = 18/442 (4%)

Query: 17  IVDQCIVPQRFFVK-SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREK 75
           ++D  +   +  V  + GC++N  ++  +  +    G   V   + AD+ V+NTC + E 
Sbjct: 1   MIDTTVFQNKTAVYYTLGCKLNFSETSTIGKILREAGVRTVRKGEKADICVVNTCSVTEM 60

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135
           A +K    + R+       +K+     VVV GC AQ +  ++  +   V+VV+G +    
Sbjct: 61  ADKKCRQAIHRL-------VKQHPGAFVVVTGCYAQLKPGDVA-KIDGVDVVLGAEQKGE 112

Query: 136 LPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
           L + L   +  ++      + +D            +R      FL +Q+GCD FC++C +
Sbjct: 113 LLQYLGDLQKHEKGEAITTTTKDIRSFSP----SCSRGDRTRFFLKVQDGCDYFCSYCTI 168

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
           P+ RG   + +++ +V++AR+    G  EI L G N+    G        +F DL+ +L 
Sbjct: 169 PFARGRSRNGTIASMVEQARQAAAEGGKEIVLTGVNI----GDFGKTTGESFFDLVKALD 224

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
           +++G+ R R ++  P  ++D +I+        MP+ H+P+QSG D +L+ M RR+    +
Sbjct: 225 QVEGIERYRISSIEPNLLTDAIIEFVSHSRSFMPHFHIPLQSGCDEVLQLMRRRYDTALF 284

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
              + +I+ V PD  I  D IVG  GET + F      +D +   Q   F YS R GT  
Sbjct: 285 ASKVRKIKEVMPDAFIGVDVIVGTRGETPEYFEQAYQFIDGLDVTQLHVFSYSERPGTQA 344

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWL 435
             +   V    K +R   L     ++  +F    +GQ++ VLIEK  K    + G +   
Sbjct: 345 LKIEYVVSPEEKHQRSQRLLTLSDQKTQAFYARHIGQVMPVLIEK-SKTGVPMHGFTENY 403

Query: 436 QSVVLNSKNHNIGDIIKVRITD 457
             V + + +     ++ VR+ D
Sbjct: 404 IRVEVENDDSLDNRVVNVRLGD 425


>gi|254463879|ref|ZP_05077290.1| MiaB-like tRNA modifying enzyme [Rhodobacterales bacterium Y4I]
 gi|206684787|gb|EDZ45269.1| MiaB-like tRNA modifying enzyme [Rhodobacterales bacterium Y4I]
          Length = 420

 Score =  331 bits (848), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 129/450 (28%), Positives = 202/450 (44%), Gaps = 39/450 (8%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
            P+     + GC++N Y++  M+++    G E        + +V+NTC +  +A  K   
Sbjct: 3   APK---FTTLGCRLNAYETEAMKELSQQAGLE--------NAVVVNTCAVTAEAVRKARQ 51

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            + R+R       +E  D  ++V GC AQ E E        V  V+G     +     + 
Sbjct: 52  EIRRLR-------RENPDAPIIVTGCAAQTEPETFAA-MEEVTRVIGNTEKMQAETWQQI 103

Query: 143 AR-------FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
           A+         K  VD   SV +    L  +DG   R R   A++ +Q GCD  CTFC++
Sbjct: 104 AKGPDFIGTTEKVQVDDIMSVTETAGHL--IDGFGTRSR---AYVQVQNGCDHRCTFCII 158

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
           PY RG   S     V+D+ ++L+D G  E+ L G ++ +W G  L  +      ++  L 
Sbjct: 159 PYGRGNSRSVPAGVVIDQIKRLVDRGYNEVVLTGVDLTSW-GADLPAKPRLGDLVMRILK 217

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
            +  L RLR ++    +  + L++A      LMP+LHL +Q G D ILK M RRH   + 
Sbjct: 218 LVPDLPRLRISSIDSIEADENLMQAIATEPRLMPHLHLSLQHGDDLILKRMARRHLRDDA 277

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
               +  R +RP++   +D I GFP ET+  F  ++ LV   G      F YS R GTP 
Sbjct: 278 IAFCEEARRLRPEMTFGADIIAGFPTETNAHFENSLKLVTDCGLTWLHVFPYSKREGTPA 337

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWL 435
           + +  QV+ NV  ER   L+     Q      A +G+   +L+E         +GR+   
Sbjct: 338 ARIPNQVNGNVIKERAARLRAAGDAQVERHLAAQIGKTHRILMENP------HMGRTEQF 391

Query: 436 QSVVLNSKNHNIGDIIKVRITDVKISTLYG 465
             V   +     G I+   IT +  S L  
Sbjct: 392 TEVAFAAPQEE-GRIVTAEITGIDGSQLVA 420


>gi|307190740|gb|EFN74642.1| CDKAL1-like protein [Camponotus floridanus]
          Length = 542

 Score =  331 bits (848), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 114/469 (24%), Positives = 205/469 (43%), Gaps = 35/469 (7%)

Query: 11  AHMVSQIVDQCIVP--QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLN 68
             +    +   I+P  Q  +VK++GC  N  D+  M       GY   +    ADL +LN
Sbjct: 45  EEVPQPPILSSIIPGTQTIYVKTWGCTHNNSDTEYMAGQLAMYGYNLSDDKLKADLWLLN 104

Query: 69  TCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVV 128
           +C ++  A ++  + +   + +            +V+AGCV Q   +    +      ++
Sbjct: 105 SCTVKNPAEDQFRNEIEHGKKI---------GKHIVIAGCVPQGAPKSSFLQG---LSII 152

Query: 129 GPQTYYRLPELLERARFGKRVVDTDYSVED-KFERLSIVDGGYNRKRGVTAFLTIQEGCD 187
           G Q   R+ E++E    G  V          K    + +     R+  +   + I  GC 
Sbjct: 153 GVQQIDRVVEVVEETLKGNTVRFLHQKKNSGKKMGGASLSLPKVRRNPLIEIIAINTGCL 212

Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTF 247
             CT+C   + RG   S    ++V+ A++  + GVCE+ L  ++  A  G+ +     + 
Sbjct: 213 NQCTYCKTKHARGELGSYQPEEIVERAKQAFEEGVCELWLTSEDTGA-YGRDI---GTSL 268

Query: 248 SDLLYSLSEI--------KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
            +LL+ L ++         G+    Y   H  +M+  L         +  +LH+PVQSGS
Sbjct: 269 PELLWKLVDVIPDGCMMRVGMTNPPYILEHLDEMAKIL-----RHPKVYSFLHIPVQSGS 323

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
           D++L  M R +T  ++   ++ +    P + I++D I GFP ET+ DF  TM L  K  +
Sbjct: 324 DQVLADMRREYTRADFEHTVNFLSERVPGLTIATDIICGFPTETEVDFEETMALCQKYKF 383

Query: 360 AQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419
              F  ++  R GTP + M  +V       R   L +    Q        VG + +VLI 
Sbjct: 384 PSLFINQFFSRPGTPAARMP-KVPTQEVKTRTKRLSEFF--QSYEPYQHKVGLLQKVLIT 440

Query: 420 KHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           +   +K   VG + + + V++  +   +G +I V+IT+    ++ GE +
Sbjct: 441 EMSHDKQHYVGHNKFYEQVLIPMEERYLGKMIDVKITEATKFSMKGEPI 489


>gi|329911495|ref|ZP_08275546.1| tRNA-i(6)A37 methylthiotransferase [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327545867|gb|EGF30978.1| tRNA-i(6)A37 methylthiotransferase [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 306

 Score =  330 bits (847), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 133/294 (45%), Positives = 187/294 (63%), Gaps = 4/294 (1%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
           ++I EGC K+C++CVVPYTRG E+SR    V+ E   L   GV EITLLGQNVNA+RG  
Sbjct: 1   MSIMEGCSKYCSYCVVPYTRGEEVSRRFDDVLAEVAGLAAQGVKEITLLGQNVNAFRGVM 60

Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
            DGE   F+ L+  ++EI G+ R+R+ TSHP++ S  LI A+  +  L+ +L+LP Q GS
Sbjct: 61  ADGEIADFALLIEFIAEIDGIERIRFVTSHPKEFSQRLIDAYAKVPKLVDHLYLPAQHGS 120

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
           DR+L +M R +TA EY+ II R+R+VRP+IAISSDFIVGFPGET+ DF A M L+D IGY
Sbjct: 121 DRVLMAMKRGYTALEYKSIIRRLRAVRPNIAISSDFIVGFPGETEADFEAMMKLIDDIGY 180

Query: 360 AQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419
             +FSF +SPR GTP + + +     VK  RL  LQ  +      ++DA VGQ++ VL+E
Sbjct: 181 DNSFSFIFSPRPGTPAATLEDDTPHAVKLARLQRLQAVIDANTRRYSDAMVGQVVRVLVE 240

Query: 420 KHGKEK-GKLVGRSPWLQSVVLNSKNH---NIGDIIKVRITDVKISTLYGELVV 469
              K+  G   GR+   + V   +       +G ++ + IT     ++ GE++ 
Sbjct: 241 GPSKKDAGDFQGRAENNRVVNFAAGPDGASLVGQLLDLTITHSFGYSVRGEMLA 294


>gi|169333944|ref|ZP_02861137.1| hypothetical protein ANASTE_00330 [Anaerofustis stercorihominis DSM
           17244]
 gi|169259509|gb|EDS73475.1| hypothetical protein ANASTE_00330 [Anaerofustis stercorihominis DSM
           17244]
          Length = 408

 Score =  330 bits (847), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 124/425 (29%), Positives = 221/425 (52%), Gaps = 17/425 (4%)

Query: 44  MEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLV 103
           M ++F + GYE V+  + AD+ V+NTC +  ++  K    + R++       K+  + + 
Sbjct: 1   MIELFKTNGYEIVDPAEKADVYVINTCAVTNESERKSKQIVRRLK-------KQNENAVT 53

Query: 104 VVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERL 163
           V+ GC A++  EE  ++    ++V G     ++ + +   +  +  V        +F++ 
Sbjct: 54  VLTGCFAESNFEE-AKKVDSADIVCGTHKREKIIDYINEFKAKQNKVYNLEEDSREFDKA 112

Query: 164 SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVC 223
            I       +    AF+ +Q+GC+ FCT+C++PY RGI  + S+ +V+ +   L   G  
Sbjct: 113 GITTYDGKSR----AFIKVQDGCNMFCTYCIIPYARGILKNASVEKVLSQIDALSKKGYR 168

Query: 224 EITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGD 283
           E+ + G +V +++    +       DLL  + +   + R+R  +  P+ ++D  +K   +
Sbjct: 169 EVVITGIHVASYKADTGE----NLIDLLELIDKENKIDRIRLGSLEPKLLTDTFLKRLSE 224

Query: 284 LDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGET 343
           L    P+ H+ +QSG D+ LK MNR++T  EY +I+ R+R+   +  I++D IVGFP ET
Sbjct: 225 LKSFCPHFHISLQSGCDKTLKEMNRKYTTKEYMEIVKRVRTYFDNPGITTDIIVGFPNET 284

Query: 344 DDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQV 403
           D+DF  T D  DK+G++    F YSP+ GTP S M  Q+ + VK +R   L+  +  ++ 
Sbjct: 285 DEDFEVTKDFTDKVGFSYVHIFPYSPKHGTPASEMENQIPKEVKTKRAKELKDVMENKRE 344

Query: 404 SFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTL 463
            F +  +G+  +VLIEK   E     G S     V + S       I+ V+ITD   + L
Sbjct: 345 DFLNNMIGKKEKVLIEKKL-EDNIYEGYSENYIYVEVKSDKDIFNQIVNVKITDKTQTHL 403

Query: 464 YGELV 468
            GE++
Sbjct: 404 RGEII 408


>gi|307106392|gb|EFN54638.1| hypothetical protein CHLNCDRAFT_135184 [Chlorella variabilis]
          Length = 635

 Score =  330 bits (847), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 142/548 (25%), Positives = 231/548 (42%), Gaps = 130/548 (23%)

Query: 11  AHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC 70
           A   + + D    P+  FV++YGCQMNV DS  +  ++   GY                 
Sbjct: 90  APSPAALPDAASPPRTAFVETYGCQMNVNDSEVVLAIWQRLGY----------------- 132

Query: 71  HIREKAAEKVYSFLGRIRNLKNSR-IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG 129
                           +++LK     +     +V V GC+A+   E +L R  +V++V G
Sbjct: 133 ----------------LKSLKRRPGAERRPPPVVGVLGCMAERLKERLLEREKLVDIVAG 176

Query: 130 PQTYYRLPELLE-----------------RARFGKRV--VDTDYSVEDKFERLSIVDGGY 170
           P  Y  LP L++                   R G R   ++   S ++ +  ++ +    
Sbjct: 177 PDAYRDLPRLIDIVQGGAGGPGGVLGSGGLPRPGGRAAAMNVQLSADETYADITPLRQP- 235

Query: 171 NRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQ 230
                ++AF++I  GC+  C FC+VPYTRG E SR L  +V   R L + GV E+TLLGQ
Sbjct: 236 ---DALSAFVSIMRGCNNMCAFCIVPYTRGRERSRPLQSIV---RMLSEQGVREVTLLGQ 289

Query: 231 NVNAWRGKGLDGEK-------------------------------------------CTF 247
           NVN++     + +                                             +F
Sbjct: 290 NVNSYADFSNNHDDSSSGVGSSSRGGGVEEASAGEDPFGAVYARGFRSAYRPRRQGAASF 349

Query: 248 SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307
           ++LL +++ +   +R+R+T+ HP+D SD +++       +   LH+P QSGS  +L+ M 
Sbjct: 350 AELLDAVAGVDPEMRIRFTSPHPKDFSDDVLRVIASRPNVCKQLHMPAQSGSSAVLERMR 409

Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           R +T   Y  ++  +R+  P++A+S+D I GF GE ++D  A++DLV   GY QAF F Y
Sbjct: 410 RGYTREAYDALVRHVRNAIPEVALSTDMIAGFCGEGEEDHAASLDLVRSAGYDQAFLFAY 469

Query: 368 SPRLGTPGSNML-EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-K 425
           S R  T  +    + V E VK  RL  L    R++      A +G+   VL+E   +  +
Sbjct: 470 SMRGKTHAARHYQDDVPEEVKQRRLAELIAAYRQELYRRAAAELGRRHLVLVEGPSRRSE 529

Query: 426 GKLVGRSPWLQSVVLNS------------------------KNHNIGDIIKVRITDVKIS 461
             L GR+   + VV +                              GD + V +T     
Sbjct: 530 SALTGRTDTFKRVVFDDVAVPASYRYGGSSGDGSSSIEAPLVRLQPGDYVAVEVTTAGG- 588

Query: 462 TLYGELVV 469
           TL    + 
Sbjct: 589 TLRARPLA 596


>gi|170028512|ref|XP_001842139.1| aq_284 [Culex quinquefasciatus]
 gi|167876261|gb|EDS39644.1| aq_284 [Culex quinquefasciatus]
          Length = 555

 Score =  330 bits (847), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 119/460 (25%), Positives = 205/460 (44%), Gaps = 23/460 (5%)

Query: 14  VSQIVDQCIVP--QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCH 71
             + + + ++P  QR ++K++GC  N  DS  M     S GY       DA+L +LN+C 
Sbjct: 54  AEKPILESVIPGTQRIYLKTWGCAHNSSDSEYMAGQLASYGYNITTDKTDANLWLLNSCT 113

Query: 72  IREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ 131
           ++  + +   + +     +            VV+AGCV QA  +           +VG Q
Sbjct: 114 VKNPSEDTFRNEILAAEKM---------GKHVVLAGCVPQAAPKSEYMHG---LSIVGVQ 161

Query: 132 TYYRLPELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190
              R+ E++E    G  V +     V  K      +     RK  +   + I  GC   C
Sbjct: 162 QLDRVTEVVEETLKGHSVRLLQPKKVNGKKVAGPNLALPKVRKNPLIEIIPINSGCLNTC 221

Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDL 250
           T+C   + R   IS  + ++++ A ++   GVCEI L  ++     G+ +     +  +L
Sbjct: 222 TYCKTKFARADLISYPVEEIIERATQVFQEGVCEIWLTSEDTGT-YGRDI---GSSLPEL 277

Query: 251 LYSLSE-IKGLVRLRYTTSHPRDMSDCL--IKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307
           L+ L E I    RLR   ++P  + + L  +        +  +LH+PVQSGSD +L  M 
Sbjct: 278 LWKLVEVIPDNCRLRLGMTNPPYILEHLDEMAKILAHPKVYGFLHVPVQSGSDSVLGEMK 337

Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           R +   ++ +I D ++   P I I++D I GFP ET+ DF  TM L  K  +   F  ++
Sbjct: 338 REYCRADFERICDFLKQKVPGITIATDIICGFPTETEADFEHTMSLCAKYEFPSLFINQF 397

Query: 368 SPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK 427
            PR GTP + M     + VK  R   L       +       +G    VL+ +   +K  
Sbjct: 398 YPRPGTPAAKMQRIPPDQVKT-RTKRLTDLFYGYEPYAKKYTIGDRQTVLVTEISHDKKH 456

Query: 428 LVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
            VG + + + ++L      +G +++VRI  +   ++  E+
Sbjct: 457 YVGHNKFYEQILLPMDKPLLGKLVEVRIAKITKFSMIAEI 496


>gi|126741000|ref|ZP_01756683.1| MiaB-like tRNA modifying enzyme [Roseobacter sp. SK209-2-6]
 gi|126717926|gb|EBA14645.1| MiaB-like tRNA modifying enzyme [Roseobacter sp. SK209-2-6]
          Length = 420

 Score =  330 bits (847), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 129/451 (28%), Positives = 203/451 (45%), Gaps = 38/451 (8%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + P +F   + GC++N Y++  M+++    G +        +L+V+NTC +  +A  K  
Sbjct: 1   MNPPKF--TTLGCRLNAYETEAMKELSQEAGLD--------NLVVVNTCAVTAEAVRKSR 50

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             + R+R       +E  +  +VV GC AQ E E        V+ V+G     +     +
Sbjct: 51  QEIRRLR-------RENPEAQIVVTGCAAQTEPESFAA-MGEVDRVIGNNEKMQAETWQQ 102

Query: 142 RA-------RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCV 194
            A          K  VD   SV +    L  +DG   R R   A++ +Q GCD  CTFC+
Sbjct: 103 IAKGPDFIGETEKIQVDDIMSVNETAGHL--IDGFGTRSR---AYVQVQNGCDHRCTFCI 157

Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL 254
           +PY RG   S     V+D+ ++LID G  E+ L G ++ +W G  L         ++  L
Sbjct: 158 IPYGRGNSRSVPAGVVIDQIKRLIDKGYNEVVLTGVDLTSW-GADLPATPRLGDLVMRIL 216

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
             +  L RLR ++    +  + L++A      LMP+LHL +Q G D ILK M RRH   +
Sbjct: 217 RLVPDLPRLRISSIDSIEADENLMQAIATEPRLMPHLHLSLQHGDDLILKRMARRHLRDD 276

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
                +  R +RPD+   +D I GFP ET+  F  ++ LV          F YS R GTP
Sbjct: 277 AIAFCEEARRLRPDMTFGADIIAGFPTETEAHFENSLKLVTDCDLTWLHVFPYSKREGTP 336

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPW 434
            + +  QV+  +  ER   L+     Q      A +G+   +L+E         +GR+  
Sbjct: 337 AAKIPNQVNGKLIKERAARLRAAGEAQTQRHLQAQLGKTHHILMENP------HMGRTEQ 390

Query: 435 LQSVVLNSKNHNIGDIIKVRITDVKISTLYG 465
              V   +     G+I+   I+  K S L  
Sbjct: 391 FTEVSFTTPQTE-GEIVMATISGSKGSQLTA 420


>gi|91201962|emb|CAJ75022.1| similar to 2-methylthioadenine synthetase [Candidatus Kuenenia
           stuttgartiensis]
          Length = 437

 Score =  330 bits (847), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 120/448 (26%), Positives = 216/448 (48%), Gaps = 25/448 (5%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +   + + GC  N+ D+  M     + G       +DA+++V+NTC   + + ++    +
Sbjct: 8   KTVALINLGCTKNLVDAEEMLGRIAANGSTICQYPEDAEVLVVNTCGFIDDSKKESIDMI 67

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            ++  LK +         ++V GC+AQ    E+    P ++ VVG + + ++  L     
Sbjct: 68  FKMAKLKENAQ----CKKLIVTGCLAQRYSAELKSEIPEIDDVVGLKDFEKITHL----- 118

Query: 145 FGKRVVD--TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            GKR +D  T Y  +D   R+ +    Y       ++L I +GCD  CT+C +P  RG  
Sbjct: 119 TGKRQMDNSTIYQGDDWRNRIRLTPKHY-------SYLRISDGCDNRCTYCAIPGIRGNF 171

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SRS+  +++E+R++   GV EI ++ Q+  +  G  + G K     LL  ++ I+G+  
Sbjct: 172 MSRSIENILEESRQMASEGVKEINIISQDTTS-YGLDIYG-KQMLHVLLEKIAAIEGIQW 229

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R   +HP      LI    + + +  Y+ LP+Q  +D IL  M R  T      +I+ +
Sbjct: 230 IRLLYTHPGHFYPELINTINEHETICKYIDLPIQHINDTILGKMGRNTTRKSIETLINNL 289

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R     I + +  IVGFPGETD+ ++  ++ + K  + +   F YS    TP +   +QV
Sbjct: 290 RRSIRSIVLRTSVIVGFPGETDEQYQELLEFIKKTKFERLGVFAYSKEENTPAAKFKKQV 349

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQS- 437
            + VK ERL  +    RE     N   +G+   V++++     G L+GR+    P +   
Sbjct: 350 GKKVKQERLNEIMLAQREIVWENNKNLIGKKASVIVDEKEVVSGMLIGRTSGDAPEVDGK 409

Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYG 465
           V +N K   +G+I ++ I++V    L  
Sbjct: 410 VFINDKQIKVGEIRELVISNVNGYDLVA 437


>gi|87312136|ref|ZP_01094241.1| hypothetical protein DSM3645_25704 [Blastopirellula marina DSM
           3645]
 gi|87285164|gb|EAQ77093.1| hypothetical protein DSM3645_25704 [Blastopirellula marina DSM
           3645]
          Length = 427

 Score =  330 bits (847), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 128/432 (29%), Positives = 209/432 (48%), Gaps = 16/432 (3%)

Query: 44  MEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLV 103
           M  +    GY  V     AD +V+NTC   E A  + ++ +  +  LK    ++G    V
Sbjct: 1   MLGLLQIDGYSLVQEPVGADFVVVNTCGFIEAARTESFAAIHEMLELK----RQGKIRGV 56

Query: 104 VVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERL 163
           VV GC+A+ + E++L   P ++ VVG      + ++ +R       +D    V       
Sbjct: 57  VVCGCLAERQKEQLLLDCPEIDQVVGVFGREEITKVADRLVGN---LDEQREVFRPAPVR 113

Query: 164 SIVDGGYNR-KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGV 222
           ++ D    R      A+L + EGCD+ CTFC +P  RG   ++ + +V+ EA +L  +GV
Sbjct: 114 ALEDRHRLRITPKHFAYLKVSEGCDRLCTFCAIPKMRGKHATKPMEEVIREAEELAADGV 173

Query: 223 CEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHG 282
            E+ ++ Q+   + G  L GE    + LL  L+++KG   +R    +P  + D L++   
Sbjct: 174 RELIVVAQDTT-YYGLDLYGEP-RLAPLLKQLNDVKGFDWIRLMYFYPMYIDDHLLQTIA 231

Query: 283 DLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGE 342
           D D ++PY+ +P+Q  +D +L+ M+RR T       I R+R   PD+AI + FI GFPGE
Sbjct: 232 DADKIVPYIDMPLQHINDTMLRRMSRRVTRSSTEDTIARMRKFIPDLAIRTTFITGFPGE 291

Query: 343 TDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQ 402
           TD+ F      V +  + +   F YS   GTP   + + + E V AER   L +  +E  
Sbjct: 292 TDEQFEELCGFVAEQKFERVGVFTYSREEGTPAVKLPDALPEEVAAERRDRLMEVQQEVV 351

Query: 403 VSFNDACVGQIIEVLIEKHGKEKGK-LVGRS----PWLQSVVLNSKNHN-IGDIIKVRIT 456
              NDA VG  ++V++++    +    +GR+    P +  VV  S      G I+K  I 
Sbjct: 352 FDRNDALVGTTMDVILDQQVPGQATAWIGRTKHDAPDVDCVVFVSGEGLAAGQIVKTEIV 411

Query: 457 DVKISTLYGELV 468
                 L G  V
Sbjct: 412 ATHEYDLIGAAV 423


>gi|327190190|gb|EGE57295.1| putative methylase protein (RNA modification enzyme), MiaB family
           [Rhizobium etli CNPAF512]
          Length = 599

 Score =  330 bits (846), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 120/436 (27%), Positives = 192/436 (44%), Gaps = 28/436 (6%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V ++GC++N Y+S  M+      G          + +++NTC +  +A  +         
Sbjct: 182 VITFGCRLNTYESEVMKAQAEKAGLN--------NAVLVNTCAVTGEAVRQARQA----- 228

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
                  ++     ++V GC AQ E ++     P V+ V+G +             FG  
Sbjct: 229 --IRRARRDNPHARIIVTGCAAQTE-KQTFAAMPEVDAVLGNEEKLSSASYRSLPDFGVS 285

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRG-VTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
             +    V D     +          G V AF+ +Q GCD  CTFC++PY RG   S  +
Sbjct: 286 AQEK-LRVNDIMSVKATAPQMVRHIDGHVRAFIQVQNGCDHRCTFCIIPYGRGNSRSVPM 344

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
             VVD+AR+L D+G  EI L G +  +  G  L G           L ++  + RLR ++
Sbjct: 345 GAVVDQARRLADSGYREIVLTGVDATS-YGGDLPGAPTLGLLAKTLLKQVPDIRRLRLSS 403

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
               +    L+    +    MP+LHL +Q G D ILK M RRH   +  + I+  RS+RP
Sbjct: 404 IDSIEADAHLMDLIAEEPRFMPHLHLSLQHGDDMILKRMKRRHLRADALRFIEDARSLRP 463

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
           +++  +D I GFP ET++ F   + L ++ G A    F YSPR GTP + M  Q+D ++ 
Sbjct: 464 EMSFGADMIAGFPTETEEMFDNAVRLAEEAGIAHLHVFPYSPRPGTPAARMP-QLDRSLV 522

Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNI 447
            +R   L+        S  D  VG    +L+E +G      +  +     V   +     
Sbjct: 523 KDRAARLRATGHRLHQSHLDGMVGTRQWLLVENNG------LAHTENFTLV--AAAGLRP 574

Query: 448 GDIIKVRITDVKISTL 463
           G+++ V IT      L
Sbjct: 575 GELVPVTITGHNGKHL 590


>gi|318061015|ref|ZP_07979736.1| hypothetical protein SSA3_23925 [Streptomyces sp. SA3_actG]
          Length = 499

 Score =  330 bits (846), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 121/494 (24%), Positives = 201/494 (40%), Gaps = 58/494 (11%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +   + + GC  N  DS  +     + G++ V     AD+ V+NTC   E A +     L
Sbjct: 5   RTVALVTLGCARNEVDSEELAGRLEADGWDLVEDASHADVAVVNTCGFVEAAKKDSVDAL 64

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
               +LK      G    VV  GC+A+  G+++    P  + V+G   Y  + + L+   
Sbjct: 65  LEANDLKG----HGRTQAVVAVGCMAERYGKDLAEALPEADGVLGFDDYADISDRLQTIL 120

Query: 145 FG-----------------------------------KRVVDTDYSVEDKFERLSIVDGG 169
            G                                   +     D +  D  + L+   G 
Sbjct: 121 SGGIHASHTPRDRRKLLPLSPAARQDAPGVALPGHAQQAPEPEDVAPTDLPDGLAPASGP 180

Query: 170 YNRKRG-----VTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCE 224
               R        A + +  GCD+ C+FC +P  RG  ISR  S V+ E R L + GV E
Sbjct: 181 RAPLRRRLGTSPVASVKLASGCDRRCSFCAIPSFRGSFISRRPSDVLTETRWLAEQGVRE 240

Query: 225 ITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL 284
           + L+ +N N   GK L G+      LL  L+ + G+ R+R +   P +M   LI      
Sbjct: 241 VMLVSEN-NTSYGKDL-GDIRLLETLLPELAAVDGIERVRVSYLQPAEMRPGLIDVLTST 298

Query: 285 DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETD 344
             + PY  L  Q  +  +L++M R      +  ++D+IR+  P+  + S+FIVGFPGET+
Sbjct: 299 PKIAPYFDLSFQHSAAGVLRAMRRFGGTDSFLGLLDQIRAKAPEAGVRSNFIVGFPGETE 358

Query: 345 DDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVS 404
           +D       +          F YS   GT  +    ++DE V AERL  + +   E    
Sbjct: 359 EDVAELERFLTSARLDAIGVFGYSDEEGTEAATYATKLDEEVVAERLARVSRLAEELTAQ 418

Query: 405 FNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVVL--------NSKNHNIGDIIK 452
             +  +G+ +EVL+E    E    +GR    +P     ++        +  +  +G ++ 
Sbjct: 419 RAEERIGETMEVLVESAATEDEPALGRGPHQAPETDGQIILTGGAALPDGASPRVGRMVV 478

Query: 453 VRITDVKISTLYGE 466
            ++   +   L  E
Sbjct: 479 AKVIGTEGVDLVAE 492


>gi|302348200|ref|YP_003815838.1| hypothetical protein ASAC_0400 [Acidilobus saccharovorans 345-15]
 gi|302328612|gb|ADL18807.1| hypothetical protein ASAC_0400 [Acidilobus saccharovorans 345-15]
          Length = 437

 Score =  330 bits (846), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 124/447 (27%), Positives = 208/447 (46%), Gaps = 24/447 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           ++++++YGC ++ +DS  M  +    GYE      +AD+I++NTC +R     K+   L 
Sbjct: 10  KYYIETYGCALSEFDSEIMRSILRGAGYEECKDPREADVIIVNTCAVRLDTEAKIVKRLK 69

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +  L     K      +VV+GC+++A    ILR +P  ++V  PQ   R+ +       
Sbjct: 70  ELNGLSLQGKK------LVVSGCLSKARPSLILRTAPAASLV-SPQNVTRILD------- 115

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
               V  D  +        +        R   A + I EGC + C+FC     R    S 
Sbjct: 116 ---AVTLDRPIYMLDGERDVNFLPKPPTRDSVATVMISEGCLENCSFCETKLARRYLKSY 172

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
               +V   R L+  G  EI L GQ+  A  G  L G+      +   L ++ G  RLR 
Sbjct: 173 PPRAIVSIVRDLVQGGAREIRLTGQDAAA-YGVDLPGKPRLPDLIADILDKVPGEYRLRI 231

Query: 266 TTSHPR---DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
               P    ++ D L+  + D   +  + H+PVQSG DR+LK MNRR+T  E++++  ++
Sbjct: 232 GMMTPNQAMEIIDDLLDVYRD-GRVFKFFHIPVQSGDDRVLKIMNRRYTVAEFKELHSKV 290

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           ++  P    ++D IVG PGE +  F  ++ LV+++ + + +  +YS R  T  ++M  QV
Sbjct: 291 KAKYPSSLFATDIIVGHPGEDEGAFMNSVRLVEELKFERVYLAQYSIRPRTASASMP-QV 349

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
            E VK ER L +Q+ +++  V    + VG     L+   G  +G    R      V + +
Sbjct: 350 PEPVKKERSLRIQEVIKKIGVEIYGSYVGGRFRGLLASRGFREGFSTVRLDNYFPVAVPA 409

Query: 443 KNHNI-GDIIKVRITDVKISTLYGELV 468
                 G+ + V+IT      L G +V
Sbjct: 410 STLRSYGEFVDVKITGATYFDLRGVIV 436


>gi|14917063|sp|O59545|Y1875_PYRHO RecName: Full=Putative methylthiotransferase PH1875
          Length = 425

 Score =  330 bits (846), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 111/447 (24%), Positives = 215/447 (48%), Gaps = 27/447 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + ++++YGC  N  D   M  + +  G+E V S ++++++V+N+C +++    K+   + 
Sbjct: 3   KVYIENYGCARNRADGEIMAALLYLSGHEIVESPEESEIVVVNSCAVKDPTERKIARRIR 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            + +             V+V GC+     + I      V+ ++G ++  R+ + +E A  
Sbjct: 63  ELLD---------NGKKVIVTGCLPHVNPDVI---DERVSAILGVKSIDRIVQAVEYAMR 110

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G++++      +   ++L   D      R V   L I EGC   CT+C     RG+  S 
Sbjct: 111 GEKLISVPDWKKRNLDKL---DFPRLSPRNVYFILPIAEGCLNACTYCATRLARGVLKSY 167

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           S  +++   +  I  G  EI L  ++     G  +       + L+  ++ I+G  R+R 
Sbjct: 168 SPEKIIGWVKWAIKQGYKEIWLSAEDTG-CYGFDI---GTNLAKLIDEITAIEGEFRIRV 223

Query: 266 TTSHPRD---MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
              +P       D LI A+ D + +  +LHLPVQSG + IL+ M R +T  E+ +I+   
Sbjct: 224 GMMNPNHVLKFLDELIDAYKD-EKVYKFLHLPVQSGDNEILRKMGRMYTVEEFEEIVKAF 282

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R   P++ + +D IVGFPGE+++ F+ +++L+ +I   +    +YSPR GT  +   +Q+
Sbjct: 283 RREFPELNLHTDIIVGFPGESEEAFQRSVELIKRIRPDKVNVSRYSPRPGTIAAKW-KQL 341

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
              V  ER   L +   +     N   +G+ ++VLI   GK+ G +   +   + ++L  
Sbjct: 342 PGWVVKERSRLLHRIRLQISYEINRKYIGKKVKVLIHGEGKK-GNVDAVTMNYKHIILP- 399

Query: 443 KNHNIGDIIKVRITDVKISTLYGELVV 469
                G+  + R+ +   + L GE++ 
Sbjct: 400 -EGRKGEFREARVKNAASTYLLGEIIT 425


>gi|295115538|emb|CBL36385.1| MiaB-like tRNA modifying enzyme [butyrate-producing bacterium
           SM4/1]
          Length = 443

 Score =  330 bits (846), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 131/439 (29%), Positives = 211/439 (48%), Gaps = 23/439 (5%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++  + + GC++N Y++  M+ M    GYE V   + AD+ V+NTC +   A +K    L
Sbjct: 2   RKAALHNLGCKVNAYETEAMQQMLEDAGYEIVPFREGADVYVINTCSVTNVADKKSRQML 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R +       K     +VV AGC  QA GEE+ ++   V++V+G      L E+LER  
Sbjct: 62  HRAK-------KMNPSAVVVAAGCYVQAAGEEL-KKDEAVDLVIGNNRKKDLVEVLERYF 113

Query: 145 FGKRVVD--TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
                 D   D     ++E+L I            AF+ +Q+G ++FC++C++PYTRG  
Sbjct: 114 NEHEGTDDIIDIGKTSEYEKLHI----RKIADHTRAFIKVQDGYNQFCSYCIIPYTRGRV 169

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK-----CTFSDLLYSLSEI 257
            SR +  VV E   L  +G  EI L G +++++        +          L+  L  I
Sbjct: 170 RSRPMEDVVQEVEALAASGYKEIVLTGIHLSSYGADFKRTAENPEAAADLLSLIVRLDRI 229

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
            G+ R+R  +  PR ++D   +    L    P+ HL +QSG +  LK MNR +T  +Y  
Sbjct: 230 PGIERIRLGSLEPRIITDEFAETLAGLKSFCPHFHLSLQSGCNETLKRMNRHYTTEDYEA 289

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
             + +R    + AI++D IVGFP ET+++F  T   + +I + +   FKYS R GT  + 
Sbjct: 290 RCEILRRYFHNPAITTDVIVGFPQETEEEFEETRQFLKRIHFYEMHIFKYSRREGTRAAV 349

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG--KLVGRSPWL 435
           M  QV E  KAER   L     +  + +    +G+  EVL+E+     G   +VG +   
Sbjct: 350 MEGQVPEPKKAERSDILLALEEQMSLEYRRTFLGKEEEVLLEERISVDGEDYMVGHTRQY 409

Query: 436 QSVVLNSKNHNIGDIIKVR 454
              V+  +       + VR
Sbjct: 410 VKAVVPYREGLKN--VTVR 426


>gi|254477031|ref|ZP_05090417.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Ruegeria sp. R11]
 gi|214031274|gb|EEB72109.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Ruegeria sp. R11]
          Length = 473

 Score =  330 bits (846), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 121/458 (26%), Positives = 202/458 (44%), Gaps = 41/458 (8%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           + S GC   + DS R+     ++GY        AD +++NTC   + A  +    +G   
Sbjct: 36  MVSLGCPKALVDSERILTRLRAEGYGVSPDYSGADAVIVNTCGFLDSAKAESLEAIGEA- 94

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
            LK +         V+V GC+  AE + I    P +  V GP  Y ++ + +  A     
Sbjct: 95  -LKENGK-------VIVTGCLG-AEPDYIREHHPRILAVTGPHQYEQVLDAVHAA----- 140

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
                 S     + L     G        ++L I EGC+  C FC++P  RG   SR   
Sbjct: 141 ---VPPSPNPYVDLLPAA--GVKLTPRHFSYLKISEGCNHKCKFCIIPDMRGKLASRPAH 195

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGK-------GLDGE-KCTFSDLLYSLSEIKG- 259
            V+ EA KL+D GV E+ ++ Q+ +A+            DGE +    DL   L ++   
Sbjct: 196 AVLREAEKLVDAGVRELLVISQDTSAYGLDRKYDVNPWKDGEVRSHIQDLSRELGKLAPA 255

Query: 260 ---LVRLRYTTSHPRDMSDCLIKAHGDLDV-LMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
               VRL Y   +P      LI    D D  L+PYL +P Q     +L+ M R   A + 
Sbjct: 256 DELWVRLHYVYPYPHV--RELIPLMADPDNALLPYLDIPFQHAHPDVLRRMARPAAAAKT 313

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
              I+  R+  PDI + S FIVG+PGET+ +F+  +D +D+    +   FKY    G   
Sbjct: 314 LDEINAWRATCPDITLRSTFIVGYPGETEAEFQHLLDWMDEAQLDRVGCFKYENVDGARS 373

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK---GKLVGRS 432
           +++ + V E VK ER     +K +    +  +A VGQ ++V+++   ++     +    +
Sbjct: 374 NDLPDHVPEEVKQERWERFMEKAQAISEAKLEAKVGQTMQVIVDDIDEDGIATCRTKADA 433

Query: 433 PWLQSVVLNS---KNHNIGDIIKVRITDVKISTLYGEL 467
           P +   +      +   +GD++ V + +     L+G +
Sbjct: 434 PEIDGNLFIDEGTEGLQVGDLVAVEVDEAGEYDLWGVI 471


>gi|332759741|gb|EGJ90044.1| RNA modification enzyme, MiaB family protein [Shigella flexneri
           4343-70]
          Length = 395

 Score =  330 bits (846), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 119/417 (28%), Positives = 200/417 (47%), Gaps = 34/417 (8%)

Query: 64  LIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPI 123
           ++++NTC   + A ++    +G              +  V+V GC+  A+ ++I    P 
Sbjct: 1   MVIVNTCGFIDSAVQESLEAIGEA---------LNENGKVIVTGCLG-AKEDQIREVHPK 50

Query: 124 VNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQ 183
           V  + GP +Y ++ E +                 + F  L + + G        A+L I 
Sbjct: 51  VLEITGPHSYEQVLEHVHHY--------VPKPKHNPFLSL-VPEQGVKLTPRHYAYLKIS 101

Query: 184 EGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA------WRG 237
           EGC+  CTFC++P  RG  +SR + +V+ EA++L+D GV EI ++ Q+ +A       R 
Sbjct: 102 EGCNHRCTFCIIPSIRGDLVSRPIGEVLSEAKRLVDAGVKEILVISQDTSAYGVDVKHRT 161

Query: 238 KGLDGE--KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPV 295
              +GE  K +   L   LS++    RL Y   +P       + A G    ++PYL +P+
Sbjct: 162 GFHNGEPVKTSMVSLCEQLSKLGIWTRLHYVYPYPHVDDVIPLMAEG---KILPYLDIPL 218

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
           Q  S RILK M R  +       I + R + P++ + S FIVGFPGET++DF+  +D + 
Sbjct: 219 QHASPRILKLMKRPGSVDRQLARIKQWREICPELTLRSTFIVGFPGETEEDFQMLLDFLK 278

Query: 356 KIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIE 415
           +    +   FKYSP  G   + + +QV E VK ER     +  ++         VG+ I 
Sbjct: 279 EARLDRVGCFKYSPVEGADANALPDQVPEEVKEERWNRFMQLQQQISAERLQEKVGREIL 338

Query: 416 VLIEKHGKEK--GKLVGRSPWLQS-VVLNSK-NHNIGDIIKVRITDVKISTLYGELV 468
           V+I++  +E   G+ +  +P +   V LN + N   GDI++V++       L+G  V
Sbjct: 339 VIIDEVDEEGAIGRSMADAPEIDGAVYLNGETNVKPGDILRVKVEHADEYDLWGSRV 395


>gi|209551318|ref|YP_002283235.1| MiaB-like tRNA modifying enzyme [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209537074|gb|ACI57009.1| MiaB-like tRNA modifying enzyme [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 424

 Score =  330 bits (846), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 121/438 (27%), Positives = 192/438 (43%), Gaps = 28/438 (6%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
             V ++GC++N Y+S  M+      G          + I++NTC +  +A  +    +  
Sbjct: 4   VDVITFGCRLNTYESEVMKAQAEKAGLN--------NAILINTCAVTGEAVRQARQAI-- 53

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
                    ++     ++V GC AQ E E     +  V+ V+G +             FG
Sbjct: 54  -----RRARRDNPHARIIVTGCAAQTEKETFAEMA-EVDAVLGNEEKLASASYRSLPDFG 107

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRG-VTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
               +    V D     +          G V AF+ +Q GCD  CTFC++PY RG   S 
Sbjct: 108 VS-TEEKLRVNDIMSVKATAPQMVRHIDGHVRAFIQVQNGCDHRCTFCIIPYGRGNSRSV 166

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            +  VVD+ARKL D+G  EI L G +  +  G  L G           L ++  + RLR 
Sbjct: 167 PMGAVVDQARKLADSGYREIVLTGVDATS-YGGDLPGAPTLGLLAKTLLKQLPDISRLRL 225

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
           ++    +    L+    D    MP+LHL +Q G D ILK M RRH+  +  + I+ +R +
Sbjct: 226 SSIDSIEADAHLMDLIADEPRFMPHLHLSLQHGDDMILKRMKRRHSRADALRFIEDVRRL 285

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
           RP+++  +D I GFP ET++ F   + L ++ G A    F YSPR GTP + M  Q+D +
Sbjct: 286 RPEMSFGADMIAGFPTETEEMFGNAVRLAEEAGIAHLHVFPYSPRPGTPAARMP-QLDRS 344

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445
           +  +R   L+        S  D  VG    +L+E +G      +  +     V   +   
Sbjct: 345 LVKDRAARLRATGHRLHQSHLDGMVGTRQWLLVENNG------LAHTENFALV--AAPGL 396

Query: 446 NIGDIIKVRITDVKISTL 463
             G+++   IT      L
Sbjct: 397 RPGELVPATITGHNGKHL 414


>gi|170287904|ref|YP_001738142.1| MiaB-like tRNA modifying enzyme [Thermotoga sp. RQ2]
 gi|170175407|gb|ACB08459.1| MiaB-like tRNA modifying enzyme [Thermotoga sp. RQ2]
          Length = 434

 Score =  330 bits (846), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 121/437 (27%), Positives = 228/437 (52%), Gaps = 24/437 (5%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +   ++++GC++N Y+S  M +     GY  V    DA   ++N+C + ++  +KV   +
Sbjct: 2   KTVRIETFGCKVNQYESEYMAEQLEKAGY-VVLPGGDASYYIVNSCAVTKEVEKKVKRLI 60

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             IRN          +  +++ GC AQ   +E       V++++G      + + +  + 
Sbjct: 61  KSIRN-------RNRNAKIILTGCFAQLSPDEARNLP--VDMILGIDEKKNIVDHIN-SL 110

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG-IEI 203
            GK+ V         +E++       + +    +++ +++GCD  CT+C +   RG    
Sbjct: 111 NGKQQVVVSEPGRPVYEKVK-----GSFEDRTRSYIKVEDGCDNTCTYCAIRLARGTRIR 165

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           S+ L    +E  +++  G  EI + G N+    GK +     + ++LL  + EI G  R+
Sbjct: 166 SKPLEIFKEEFAEMVMKGYKEIVITGVNLG-KYGKDM---GSSLAELLRIVEEIPGDYRV 221

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R ++ +  D++D +++A      L P+LH+ VQSGSD +LK M R++   ++ +++D++R
Sbjct: 222 RLSSINVEDVNDEIVEAFKRNPRLCPHLHISVQSGSDDVLKRMGRKYKISDFMRVVDKLR 281

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           S+ PD +I++D IVGFPGETD DF+ T++LV+K+ +++   F++SPR GTP S M   V 
Sbjct: 282 SIDPDFSITTDIIVGFPGETDADFQRTLELVEKVEFSRVHIFRFSPRPGTPASRMEGGVP 341

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
           E+ K ERL  L++K ++  + +    +G+  +VL E     KG L G   +         
Sbjct: 342 ESKKKERLDVLKEKAKDVSIRYRKRIIGKERKVLAE-WYVMKGVLSGYDEYYVKHEFVG- 399

Query: 444 NHNIGDIIKVRITDVKI 460
            + +G+   VR+  +  
Sbjct: 400 -NRVGEFHSVRVKSLSE 415


>gi|332528547|ref|ZP_08404535.1| ribosomal protein S12 methylthiotransferase [Hylemonella gracilis
           ATCC 19624]
 gi|332042058|gb|EGI78396.1| ribosomal protein S12 methylthiotransferase [Hylemonella gracilis
           ATCC 19624]
          Length = 486

 Score =  330 bits (846), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 121/488 (24%), Positives = 200/488 (40%), Gaps = 58/488 (11%)

Query: 14  VSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIR 73
            +  V     P+  FV S GC   + DS  +     ++GY+   +   ADL+++NTC   
Sbjct: 18  ATPAVASSSAPKVGFV-SLGCPKALTDSELILTQLSAEGYQTSKTFAGADLVIVNTCGFI 76

Query: 74  EKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCV----------AQAEGEEILRRSPI 123
           + A ++    +G                 V+V GC+           Q     + +  P 
Sbjct: 77  DDAVKESLDTIGEALAENGK---------VIVTGCLGARTVGDGDDGQVGANLVRQMHPS 127

Query: 124 VNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSI---VDGGYNRKRGVTAFL 180
           V  V GP     + + +                 D F  L      + G        A+L
Sbjct: 128 VLAVTGPHATQEVMDAVHLHLP---------KPHDPFLDLVPGGFGEAGLKLTPRHYAYL 178

Query: 181 TIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA------ 234
            I EGC+  CTFC++P  RG  +SR +  V+ EA+ L + GV E+ ++ Q+ +A      
Sbjct: 179 KISEGCNHRCTFCIIPSMRGDLVSRPVGDVLKEAKALFEGGVKELLVVSQDTSAYGVDVK 238

Query: 235 WRGKGLDGE--KCTFSDLLYSLSEI----KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLM 288
           +R    DG+  K    DL+ +L E+       VRL Y   +P       + A G   +++
Sbjct: 239 YRTGFWDGKPVKTRMLDLVQALGELAAEHGAWVRLHYVYPYPHVDDILPLMAQG---LVL 295

Query: 289 PYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFR 348
           PYL +P Q     +L+ M R  +  +  + I R R + P++ + S FI GFPGET+++F 
Sbjct: 296 PYLDVPFQHSHPEVLRRMKRPASGEKNLERIQRWREICPELVVRSTFIAGFPGETEEEFA 355

Query: 349 ATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDA 408
             +D V +    +A  F YSP  G   + +   + + ++ ER         E   +    
Sbjct: 356 HLLDFVREAQIDRAGCFAYSPVRGAAANELPGALPDALREERRQRFMAVAEEVSTTRLQR 415

Query: 409 CVGQIIEVLIE---KHGKEK--GKLVGRSPWLQSVV------LNSKNHNIGDIIKVRITD 457
            VG  ++VL++     GK+   G+    +P +   V        SK    G+  K RI  
Sbjct: 416 RVGATMQVLVDSAPGLGKKGGVGRSYADAPEIDGTVRLLPPEKISKTLKAGEFTKARIVA 475

Query: 458 VKISTLYG 465
                L  
Sbjct: 476 TDGHDLVA 483


>gi|333024071|ref|ZP_08452135.1| hypothetical protein STTU_1575 [Streptomyces sp. Tu6071]
 gi|332743923|gb|EGJ74364.1| hypothetical protein STTU_1575 [Streptomyces sp. Tu6071]
          Length = 499

 Score =  330 bits (846), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 121/494 (24%), Positives = 201/494 (40%), Gaps = 58/494 (11%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +   + + GC  N  DS  +     + G++ V     AD+ V+NTC   E A +     L
Sbjct: 5   RTVALVTLGCARNEVDSEELAGRLEADGWDLVEDASHADVAVVNTCGFVEAAKKDSVDAL 64

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
               +LK      G    VV  GC+A+  G+++    P  + V+G   Y  + + L+   
Sbjct: 65  LEANDLKG----HGRTQAVVAVGCMAERYGKDLAEALPEADGVLGFDDYADISDRLQTIL 120

Query: 145 FG-----------------------------------KRVVDTDYSVEDKFERLSIVDGG 169
            G                                   +     D +  D  + L+   G 
Sbjct: 121 SGGIHASHTPRDRRKLLPLSPAARQDAPGVALPGHAQQAPEPEDVAPADLPDGLAPASGP 180

Query: 170 YNRKRG-----VTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCE 224
               R        A + +  GCD+ C+FC +P  RG  ISR  S V+ E R L + GV E
Sbjct: 181 RAPLRRRLGTSPVASVKLASGCDRRCSFCAIPSFRGSFISRRPSDVLTETRWLAEQGVRE 240

Query: 225 ITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL 284
           + L+ +N N   GK L G+      LL  L+ + G+ R+R +   P +M   LI      
Sbjct: 241 VMLVSEN-NTSYGKDL-GDIRLLETLLPELAAVDGIERVRVSYLQPAEMRPGLIDVLTST 298

Query: 285 DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETD 344
             + PY  L  Q  +  +L++M R      +  ++D+IR+  P+  + S+FIVGFPGET+
Sbjct: 299 PKIAPYFDLSFQHSAAGVLRAMRRFGGTDSFLGLLDQIRAKAPEAGVRSNFIVGFPGETE 358

Query: 345 DDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVS 404
           +D       +          F YS   GT  +    ++DE V AERL  + +   E    
Sbjct: 359 EDVAELERFLTSARLDAIGVFGYSDEEGTEAATYATKLDEEVVAERLARVSRLAEELTAQ 418

Query: 405 FNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVVL--------NSKNHNIGDIIK 452
             +  +G+ +EVL+E    E    +GR    +P     ++        +  +  +G ++ 
Sbjct: 419 RAEERIGETMEVLVESAATEDEPALGRGPHQAPETDGQIILTGGAALPDGASPRVGRMVV 478

Query: 453 VRITDVKISTLYGE 466
            ++   +   L  E
Sbjct: 479 AKVIGTEGVDLVAE 492


>gi|261749373|ref|YP_003257058.1| putative 2-methylthioadenine synthetase [Blattabacterium sp.
           (Periplaneta americana) str. BPLAN]
 gi|261497465|gb|ACX83915.1| putative 2-methylthioadenine synthetase [Blattabacterium sp.
           (Periplaneta americana) str. BPLAN]
          Length = 444

 Score =  330 bits (846), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 121/441 (27%), Positives = 210/441 (47%), Gaps = 20/441 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++    + GC++N  ++  +     +  YE V+    AD+ V+NTC + EKA +     +
Sbjct: 4   KKIAFYTIGCKLNYAETSTIARKLSNSNYELVSFKSVADIYVINTCSVTEKAEKDFKYVV 63

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
                     +K+     ++  GC AQ   +EI    P V++V+G +  +++ + L++A 
Sbjct: 64  RFF-------MKKNAKAFIIAIGCYAQIHPKEI-SSFPGVDLVLGMKEKFQIIDYLDQAN 115

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
             K+      S E      S   G   R     +F  IQ+GCD  C++C++P +RG   S
Sbjct: 116 LFKKNPAKIISKETNSYFPSYSIGDRTR-----SFFKIQDGCDYKCSYCIIPISRGFSRS 170

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK----CTFSDLLYSLSEI--K 258
            S+  ++   R L   G+ EI L G N+    GK + G       TF DL+ ++ +I  +
Sbjct: 171 ESIENILKNIRFLFKKGIKEIVLTGINIG-DYGKKIYGNHPGRSYTFFDLIQAIDQIKEE 229

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           G  R+R ++  P  + +  I+      + MP+ H+P+QSGS+ IL  M RR+    Y++ 
Sbjct: 230 GRGRIRLSSIEPNLLKEKCIEFLSKSRLFMPHFHIPLQSGSNYILGKMQRRYRRELYQEK 289

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           +  IR++ PD  I SD IVGFPGET + F  T   + K+  +    F YS R  T   ++
Sbjct: 290 VQYIRNLIPDAYIGSDIIVGFPGETHEHFLETYHFLKKLEISFLHIFPYSQRPNTKSLSI 349

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSV 438
            ++V   V+ +R + L+   +++  SF +  +     VL E +    G L G +      
Sbjct: 350 QKKVSPEVQRKRKIILRVLSKQKYRSFCEKQIHTKKTVLFENNSVNHGYLYGYTENYIRT 409

Query: 439 VLNSKNHNIGDIIKVRITDVK 459
            ++S       +  V +T V 
Sbjct: 410 KIDSNPLFANTVQDVLLTKVD 430


>gi|319942388|ref|ZP_08016702.1| ribosomal protein S12 methylthiotransferase rimO [Sutterella
           wadsworthensis 3_1_45B]
 gi|319804076|gb|EFW00984.1| ribosomal protein S12 methylthiotransferase rimO [Sutterella
           wadsworthensis 3_1_45B]
          Length = 448

 Score =  329 bits (845), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 128/463 (27%), Positives = 200/463 (43%), Gaps = 43/463 (9%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
               S GC   + D+ R+     ++GY   ++  DAD++++NTC    +A E+    +  
Sbjct: 9   VGFVSLGCPKALVDTERIVTELRARGYRIGSTYKDADVVIVNTCGFVNEAVEESLGAIAE 68

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEE----ILRRSPIVNVVVGPQTYYRLPELLER 142
              LK +         V+V GC+      +    I+ R P V  V GP +   +  ++E 
Sbjct: 69  A--LKENGR-------VIVCGCLGGRTEADGSNFIMVRHPKVIGVTGPDSVDEVLAMVEG 119

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
                          D ++ L     G        A+L I EGC+  CTFCV+P+ RG  
Sbjct: 120 VLP---------RPHDPWDDLVPA-AGVRLTPKHYAYLKISEGCNHHCTFCVIPHLRGSL 169

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE---------KCTFSDLLYS 253
            SRS+  ++ EA  L   GV E+ ++ Q+  A  G     +              DL   
Sbjct: 170 NSRSMDSIIREAMNLKAAGVKELLVISQDTAA-YGVDKRYKLDFACGRPVHTKLIDLCRE 228

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
           L  +    RL Y   +P       + A G   +++PYL +P Q    RILK M R     
Sbjct: 229 LGRLDLWTRLHYVYPYPHVDDIVPLMAEG---LILPYLDVPFQHAHPRILKLMKRPACGE 285

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
           +  + I   R   PDI I S FIVGFPGET+ +F   +D + +    +   F YSP  G 
Sbjct: 286 KNLERIAAWRRACPDITIRSTFIVGFPGETEAEFEYLLDFLREAELDRVGCFAYSPVDGA 345

Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS- 432
             +++   + + V+ ER     +   E  +      +G+I +V+I++   E G  VGR+ 
Sbjct: 346 AANDLPGALPDEVREERRRRFMEVQAEISLRKLARRIGRIEDVIIDEEPDEDGVAVGRTK 405

Query: 433 ---PWLQSV--VLNSKNHNIGDIIKVRITDVKISTLYG-ELVV 469
              P +  V  V   +    GDI+ VRIT  +   L G E+V 
Sbjct: 406 SDAPDIDGVCYVTTDRKLVPGDIVPVRITANEEHDLVGREVVA 448


>gi|225851472|ref|YP_002731706.1| hypothetical protein PERMA_1953 [Persephonella marina EX-H1]
 gi|225645752|gb|ACO03938.1| conserved hypothetical protein [Persephonella marina EX-H1]
          Length = 439

 Score =  329 bits (845), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 116/435 (26%), Positives = 203/435 (46%), Gaps = 16/435 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    + GC+MN +++  +E+ F  +GY   +  D AD+ V+NTC +   A       + 
Sbjct: 5   KVAFSTLGCRMNQFETSAIEEKFEREGYTLTDFRDKADIYVINTCTVTNDADRTSRKTIR 64

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           + +       +   D +VVV GC AQ   +++  +   +++V+G      + E++E    
Sbjct: 65  QAK-------RRNPDAVVVVTGCYAQVSPDKLA-QMEEIDLVIGNSHKDAVFEIVEN-FI 115

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            +R  D  +      +             G    L +QEGC+ FC+FC++P+ RG   S 
Sbjct: 116 NERRQDKVFIDNIFRQNEFKTFQISTFYEGSRPILKVQEGCNSFCSFCIIPFARGKVRSA 175

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
              +VV +   L++ G  EI L G  ++ +              LL  + +IK L R+R 
Sbjct: 176 KTEEVVKQISILVERGFKEIVLTGTQLSQFGYD----NGEDLYSLLKDIVKIKDLYRVRL 231

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
           ++    ++ D LI      + + P+ HL +QS  D++LK M R +T  EY + ++ I   
Sbjct: 232 SSMGINELDDKLIDLITSEEKIAPHFHLSIQSADDKVLKDMKRDYTVKEYIEKVESIIKR 291

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
           RP+ AI +D I GFP E +  F  ++  ++ I +A    F YS R GT  S + + V   
Sbjct: 292 RPETAIGTDIITGFPTEDEKSFENSLKNIEDIPFAYIHVFTYSERKGTTASKIGDLVPPQ 351

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445
            K  R   L++   ++ + F    +   +EVLI    ++ GK VG +     +  +S+  
Sbjct: 352 EKKRRTAILREISEKKSIEFRKRFLNNDLEVLI--ISEKDGKKVGITGNYIHIKFDSEKD 409

Query: 446 NIGDIIKVRITDVKI 460
            I  I  VR+T+V  
Sbjct: 410 -INQITSVRLTEVGR 423


>gi|148284718|ref|YP_001248808.1| MiaB-like tRNA modifying enzyme [Orientia tsutsugamushi str.
           Boryong]
 gi|146740157|emb|CAM80374.1| MiaB-like tRNA modifying enzyme [Orientia tsutsugamushi str.
           Boryong]
          Length = 423

 Score =  329 bits (845), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 114/440 (25%), Positives = 209/440 (47%), Gaps = 32/440 (7%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V ++GC++N Y+S  ++        +        ++IV NTC + ++A  +    + + +
Sbjct: 15  VITFGCRLNAYESEIIKQNLKIANLD--------NVIVFNTCTVTQEAERQAKQAIRKAK 66

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
                  +E  ++ ++V GC AQ   + +  + P VN ++G +          +    K 
Sbjct: 67  -------RENPNIKIIVTGCAAQNNPD-LFNQMPQVNKILGNEEKLYPEFY--QFDENKI 116

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
            V+   S+++    +     G  R     AF+ +Q GC+  CTFC++PY RG   S  + 
Sbjct: 117 QVNDIMSIQETATHMISNFDGKTR-----AFIQVQNGCNHRCTFCIIPYVRGNSRSVPIG 171

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
            +  + + LI+ G  EI   G ++ +  G  L G       +   L  +  L RLR ++ 
Sbjct: 172 VITQQIQLLINQGYKEIVFTGVDLTS-YGADLPGSPTLAQMIKRVLMLVPALPRLRLSSI 230

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
              ++   L K   D   LMP+ H+ +Q+G + ILK M RRHT  +  +  +++R + PD
Sbjct: 231 DIAEIDQELFKLMTDEPRLMPHFHISLQAGDNMILKRMKRRHTREQIIEFCNKMRKILPD 290

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
            +  +D I GFP ET+  F  +++L+ + G      F YS R  TP S M  QV ++++ 
Sbjct: 291 ASFGADMIAGFPTETEIMFNNSLNLISETGIQYLHVFPYSERENTPASKMP-QVQKHIRK 349

Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIG 448
           +R   L+ + ++Q   F    +G+I++VL+EK         G S       + +    IG
Sbjct: 350 KRAQLLRNEGKKQLQLFFQQQIGKIVKVLVEKEQ------FGHSENFIPTYI-ATRQTIG 402

Query: 449 DIIKVRITDVKISTLYGELV 468
           +I+ V++T +    + G +V
Sbjct: 403 EIVNVKLTGIDNDHMTGTVV 422


>gi|309811282|ref|ZP_07705071.1| ribosomal protein S12 methylthiotransferase RimO [Dermacoccus sp.
           Ellin185]
 gi|308434764|gb|EFP58607.1| ribosomal protein S12 methylthiotransferase RimO [Dermacoccus sp.
           Ellin185]
          Length = 493

 Score =  329 bits (845), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 118/496 (23%), Positives = 203/496 (40%), Gaps = 55/496 (11%)

Query: 21  CIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKV 80
               +   V + GC  N  DS  +     ++G+  V+   +AD+ V+NTC   E+A +  
Sbjct: 3   SAPTRSVAVVTLGCARNEVDSEELAGRLSAEGWTLVDDAAEADVAVVNTCGFVEQAKKDS 62

Query: 81  YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140
              L     LK S    G    VV  GC+A+  G+++  + P  + V+G  +Y  +   L
Sbjct: 63  IDALLEANELKES----GRTQAVVAVGCLAERYGKQLADQLPEADAVLGFDSYTDMSTHL 118

Query: 141 ERARFGKR---------------------------------VVDTDYSVEDKFERLSIVD 167
                G +                                    ++ S  +    ++   
Sbjct: 119 TSVLNGHKPEAHMPGDRRKLLPISPAKRQEGAGGLALPGHGAPVSEPSDVEVASPVATPR 178

Query: 168 GGYNRKRG-VTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEIT 226
               R  G   A L I  GCD+ C FC +P  RG  ISR  + V+ EAR L ++ V E+ 
Sbjct: 179 VIRARLDGRPWAPLKIASGCDRRCAFCAIPAFRGAFISRRPADVLAEARWLGEHDVKEVF 238

Query: 227 LLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV 286
           L+ +N  +  GK L G+      +L  L  + G+ R+R +   P ++   L+    +   
Sbjct: 239 LVSENSTS-YGKDL-GDLRLLDTMLPELVAVDGIERVRVSYLQPAEIRPDLLDVMANTPG 296

Query: 287 LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDD 346
           + PY  +  Q  S  +L++M R      +  ++D +R   P+  I S+ IVGFPGE++ D
Sbjct: 297 IAPYFDISFQHASGPLLRTMRRFGDRESFLGLLDDVRRRVPNAGIRSNVIVGFPGESEKD 356

Query: 347 FRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFN 406
                  +          F YS   GT      +++ ++    RL   +    E  +   
Sbjct: 357 LDELEQFLVAARLDVVGVFGYSDEDGTEAETYADKLPQDEIDARLEHFRTLTEELNLQRA 416

Query: 407 DACVGQIIEVLIE--KHGKEKG-----KLVGRS----PWLQSVVL----NSKNHNIGDII 451
           +  +G+ +EVLIE  +   E       + VGR+    P +  +      + +   +GDI+
Sbjct: 417 EERIGERLEVLIEATESDDEDDPEAAVRHVGRAGQQGPDVDGMTYVEAPDGRELRVGDIV 476

Query: 452 KVRITDVKISTLYGEL 467
           +V +   +   L GEL
Sbjct: 477 EVEVVATEGIDLVGEL 492


>gi|298383745|ref|ZP_06993306.1| 2-methylthioadenine synthetase [Bacteroides sp. 1_1_14]
 gi|298263349|gb|EFI06212.1| 2-methylthioadenine synthetase [Bacteroides sp. 1_1_14]
          Length = 443

 Score =  329 bits (845), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 116/456 (25%), Positives = 208/456 (45%), Gaps = 20/456 (4%)

Query: 17  IVDQCIVPQRFFVK-SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREK 75
           ++D  +   +  V  + GC++N  ++  +  +    G       + AD+ V+NTC + E 
Sbjct: 1   MIDTTVFQNKTAVYYTLGCKLNFSETSTIGKILREAGVRTARKGEKADICVVNTCSVTEM 60

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135
           A +K    + R+       +K+     VVV GC AQ +  ++  +   V+VV+G +    
Sbjct: 61  ADKKCRQAIHRL-------VKQHPGAFVVVTGCYAQLKPGDVA-KIKGVDVVLGAEQKGD 112

Query: 136 LPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
           L + L      +       +     + +       +R      FL +Q+GCD FC++C +
Sbjct: 113 LLQYLGDLHKHEE----GEAFTTTTKDIRSFSPSCSRGDRTRFFLKVQDGCDYFCSYCTI 168

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
           P+ RG   + +++ +V++AR+    G  EI L G N+    G        TF DL+ +L 
Sbjct: 169 PFARGRSRNGTVASMVEQARQAAAEGGKEIVLTGVNI----GDFGKTTGETFFDLVKALD 224

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
           +++G+ R R ++  P  ++D +I+        MP+ H+P+QSG D +LK M RR+    +
Sbjct: 225 QVEGIERYRISSIEPNLLTDEIIEFVSRSRRFMPHFHIPLQSGCDEVLKLMRRRYDTALF 284

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
              + +I+ V PD  +  D IVG  GET++ F      +  +   Q   F YS R GT  
Sbjct: 285 ASKVKKIKEVMPDAFVGVDVIVGTRGETEEYFEQAYQFISGLDVTQLHVFSYSERPGTQA 344

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWL 435
             +   V    K +R   L     E+   F    +GQ ++VL+EK  K    + G +   
Sbjct: 345 LKIDYVVSPEEKHQRSQRLLTLSDEKTRVFYTRHIGQTMQVLMEK-SKAGTPMHGFTANY 403

Query: 436 QSVVLNSKNHNIGDIIKVRITDVKI--STLYGELVV 469
             V + +       +I VR+ +     + L G +++
Sbjct: 404 IRVEVENDESLDNQMINVRLGEFNEDMTALKGTILM 439


>gi|126725177|ref|ZP_01741020.1| RNA modification enzyme, MiaB-family protein [Rhodobacterales
           bacterium HTCC2150]
 gi|126706341|gb|EBA05431.1| RNA modification enzyme, MiaB-family protein [Rhodobacterales
           bacterium HTCC2150]
          Length = 461

 Score =  329 bits (845), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 117/480 (24%), Positives = 202/480 (42%), Gaps = 34/480 (7%)

Query: 1   MGLFIKLIGVAHMVSQIVDQCIVP--QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNS 58
           M      +      S  + +   P   +  + S GC   + DS R+     ++GY     
Sbjct: 1   MTQNPPSLRPDLAPSAKIRESARPGQPKIGMVSLGCPKALVDSERILTRLRAEGYAISPD 60

Query: 59  MDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEIL 118
              A+ +++NTC   + A  +    +G              +  V+V GC+  A+ E IL
Sbjct: 61  YSGAEAVIVNTCGFLDSAKVESLEAIGEALQ---------ENGRVIVTGCLG-ADSEYIL 110

Query: 119 RRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTA 178
              P V  V GP  Y ++ + +  A              D F  L +   G +      +
Sbjct: 111 GHHPTVLAVTGPHQYEQVLDAVHAA---------VPPAPDAFIDL-LPSSGVSLTPRHYS 160

Query: 179 FLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW--- 235
           +L I EGC+  C FC++P  RG   SR    +V EA +L+D GV E+ ++ Q+ +A+   
Sbjct: 161 YLKISEGCNHKCKFCIIPDMRGRLSSRPAHAIVREAERLVDAGVKELLVISQDTSAYGLD 220

Query: 236 -RGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV-LMPYLHL 293
            R       +   +DL   L  +   VRL Y   +P      LI    D    ++PYL +
Sbjct: 221 LRHATDRDHRAHITDLARDLGSLGAWVRLHYVYPYPHV--RDLIPIMADPTNGVLPYLDI 278

Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
           P Q     +L+ M R   A +    I   R   PDI + S FIVG+PGET+ +F+  +D 
Sbjct: 279 PFQHAHPDVLRRMARPAAAAKTLDEIAAWRKDCPDITLRSTFIVGYPGETEAEFQTLLDW 338

Query: 354 VDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQI 413
           +D+    +   F+Y    G   + + + V + +K +R     +K +    +     VG+ 
Sbjct: 339 LDEAQLDRVGCFQYENVEGARSNALPDHVADEIKQDRWNRFMEKSQAISEAKLATKVGRK 398

Query: 414 IEVLIEKHGKEKG--KLVGRSPWLQSVVLNS---KNHNIGDIIKVRITDVKISTLYGELV 468
           IEV+++    +    + +  +P +   +      +    GD++ V + +     L+G LV
Sbjct: 399 IEVIVDSVEDDGATCRTMSDAPEIDGNLFIDEGFEKLVAGDLLTVEVDEAGDYDLWGRLV 458


>gi|239815572|ref|YP_002944482.1| ribosomal protein S12 methylthiotransferase [Variovorax paradoxus
           S110]
 gi|239802149|gb|ACS19216.1| MiaB-like tRNA modifying enzyme YliG [Variovorax paradoxus S110]
          Length = 468

 Score =  329 bits (845), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 117/487 (24%), Positives = 203/487 (41%), Gaps = 55/487 (11%)

Query: 11  AHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC 70
           + + S          +    S GC   + DS  +     ++GY+   + + ADL+++NTC
Sbjct: 2   SEVASPERAATTAAPKVGFVSLGCPKALTDSELILTQLSAEGYQTAKTFEGADLVIVNTC 61

Query: 71  HIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEE----ILRRSPIVNV 126
              + A ++    +G              +  V+V GC+    G++    + +  P V  
Sbjct: 62  GFIDDAVKESLDTIGEALA---------ENGRVIVTGCLGAKTGDQGGNLVRQMHPSVLA 112

Query: 127 VVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGG---YNRKRGVTAFLTIQ 183
           V GP     + + +                 D F  L     G           A+L I 
Sbjct: 113 VTGPHATQEVMDAVHANLP---------KPHDPFVDLVPNTFGIAGLKLTPRHYAYLKIS 163

Query: 184 EGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RG 237
           EGC+  CTFC++P  RG  +SR +  V+ EA+ L + GV E+ ++ Q+ +A+      R 
Sbjct: 164 EGCNHRCTFCIIPSMRGDLVSRPVGDVLGEAKALFEGGVKELLVISQDTSAYGVDVKYRT 223

Query: 238 KGLDGE--KCTFSDLLYSLSEI----KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL 291
              DG+  K    +L+ +L EI       VRL Y   +P       + A G    ++PYL
Sbjct: 224 GFWDGKPVKTRMLELVRTLGEIAEPYGAWVRLHYVYPYPSVDEIIPLMASGQ---VLPYL 280

Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351
            +P+Q     +LK M R  +  +  + + R R V P++ I S FI GFPGET+ +F   +
Sbjct: 281 DVPLQHSHPDVLKRMKRPASGEKNLERLARWREVCPELVIRSTFIAGFPGETEQEFEHLL 340

Query: 352 DLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVG 411
           D + +    +A  F YSP  G   +++   +    +  R     +      ++     +G
Sbjct: 341 DFIREAQIDRAGCFAYSPVAGATANDIPGMLPPAEREARRARFMEVAEAVSIAKLRQRIG 400

Query: 412 QIIEVLIE---KHGKEKGKLVGRS----PWLQSVV------LNSKNHNIGDIIKVRITDV 458
             ++VL++     G++ G  VGR+    P +   V        SK   +G+  + RI   
Sbjct: 401 ATMQVLVDSAPGMGRKGG--VGRTYADAPEIDGTVRLLPPEKISKTLKVGEFTRARIVGA 458

Query: 459 KISTLYG 465
           +   L  
Sbjct: 459 EGHDLIA 465


>gi|305667743|ref|YP_003864030.1| putative Fe-S oxidoreductase [Maribacter sp. HTCC2170]
 gi|88707580|gb|EAQ99822.1| putative Fe-S oxidoreductase [Maribacter sp. HTCC2170]
          Length = 405

 Score =  329 bits (845), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 115/431 (26%), Positives = 203/431 (47%), Gaps = 33/431 (7%)

Query: 45  EDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVV 104
                +   E V+  ++ +++V+NTC   + A E+  + + +    K +    G    V 
Sbjct: 1   MGQLKANNKEVVH-EEEGNVVVINTCGFIDNAKEESVNTILQFVEKKEA----GEVDKVF 55

Query: 105 VAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLS 164
           V GC+++    ++ +  P V+   G       P LL       + +  DY  E   ERL+
Sbjct: 56  VTGCLSERYKPDLQKEIPNVDEYFGTSEL---PNLL-------KALGADYKHELIGERLT 105

Query: 165 IVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCE 224
                Y       A+L I EGCD+ C+FC +P  RG   S+ + ++V E++KL   GV E
Sbjct: 106 TTPKNY-------AYLKIAEGCDRPCSFCAIPLMRGKHKSKPIEELVTESKKLAAKGVKE 158

Query: 225 ITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL 284
           + L+ Q++  + G  L  +K   + LL  L ++ G+  +R   + P      ++    D 
Sbjct: 159 LILIAQDLT-YYGLDLY-KKRNLAVLLQKLVKVDGIEWIRLHYAFPTGFPMDVLDVMNDE 216

Query: 285 DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETD 344
             +  YL +P+Q  SD ILKSM R  T  +  ++I   R+  P +AI +  IVG+PGET+
Sbjct: 217 PKICNYLDIPLQHISDDILKSMRRGTTQEKTTRLIQEFRNHVPSMAIRTTLIVGYPGETE 276

Query: 345 DDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVS 404
             F+     V ++ + +   F YS    T   N+++ V + VK ER   + +   +    
Sbjct: 277 AHFQNLKKWVGEMRFERLGCFTYSHEENTHAYNLVDDVPQEVKQERANEIMELQSQISWE 336

Query: 405 FNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQS-VVLNSKNHNI--GDIIKVRITD 457
            N   +G+    +I++  KE    VGR+    P + + V++++    +  G+  +++I D
Sbjct: 337 LNQEKIGKTFNCIIDR--KEGNHFVGRTEFDSPDVDNEVLIDAAKFYLKQGEFAQIKIVD 394

Query: 458 VKISTLYGELV 468
                LYGE V
Sbjct: 395 AADFDLYGEPV 405


>gi|225460743|ref|XP_002268292.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 615

 Score =  329 bits (845), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 125/448 (27%), Positives = 214/448 (47%), Gaps = 28/448 (6%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           Q  ++K++GC  N  DS  M     + GY   ++ ++ADL ++NTC ++  +   + + +
Sbjct: 55  QTIYMKTFGCSHNQSDSEYMAGQLAAFGYVLSDNPEEADLWLINTCTVKSPSQSAMDTLI 114

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            + R+ K           +VVAGCV Q   +  L+    V++V G Q   R+ E++E   
Sbjct: 115 TKGRSSKKP---------LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETL 162

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G  V   +         L  +D    RK      L I  GC   CT+C   + RG   S
Sbjct: 163 KGHEVRLLNRKT------LPALDLPKVRKNKFVEILPINVGCLGACTYCKTKHARGHLGS 216

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK--GLVR 262
            ++  +V   R +I +GV EI L  ++  A+   G D        L   +SE+   G   
Sbjct: 217 YTVDSLVRRVRTVIADGVKEIWLSSEDTGAY---GRDIGVTLPILLNAIVSELPPDGGTM 273

Query: 263 LRYTTSHPRDMSDCL--IKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
           LR   ++P  + + L  +        +  +LH+PVQSGSD IL +MNR +T  E+R ++D
Sbjct: 274 LRIGMTNPPYILEHLKEMAVVLRHPCVYSFLHVPVQSGSDAILSAMNREYTVTEFRTVVD 333

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
            +  + P + I++D I GFPGETD++F  T+ L+ +  + Q    ++ PR GTP + M +
Sbjct: 334 TLTELVPGMQIATDIICGFPGETDEEFAQTVSLIQEYRFPQVHISQFYPRPGTPAARM-K 392

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440
           +V   V  +R   L      +  +  +   G++  + I +   +   LVG +     V++
Sbjct: 393 KVPSAVVKKRSRELTSIF--EAFTPYNGMEGRVERIWISEIATDGIHLVGHTKGYMQVLV 450

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
            +    +G    V+IT V   +++GEL+
Sbjct: 451 VAPRSLMGTSAIVKITSVGRWSVFGELI 478


>gi|91788563|ref|YP_549515.1| ribosomal protein S12 methylthiotransferase [Polaromonas sp. JS666]
 gi|123355625|sp|Q12A25|RIMO_POLSJ RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|91697788|gb|ABE44617.1| SSU ribosomal protein S12P methylthiotransferase [Polaromonas sp.
           JS666]
          Length = 469

 Score =  329 bits (845), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 120/484 (24%), Positives = 206/484 (42%), Gaps = 50/484 (10%)

Query: 14  VSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIR 73
               +     P+  FV S GC   + DS  +     ++GY+   + + ADL+++NTC   
Sbjct: 7   PMTAISTKPAPRVGFV-SLGCPKALTDSELILTQLSAEGYQTSKTFEGADLVIVNTCGFI 65

Query: 74  EKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEE----ILRRSPIVNVVVG 129
           + A ++    +G              +  V+V GC+    GE     + +  P V  V G
Sbjct: 66  DDAVKESLDTIGEALA---------ENGRVIVTGCLGAKGGEGAGNLVRQMHPSVLAVTG 116

Query: 130 PQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDG--GYNRKRGVTAFLTIQEGCD 187
           P     + + +         ++     +   + +    G  G        A+L I EGC+
Sbjct: 117 PHATQEVMDAVH--------LNLPKPHDPFVDLVPNAFGIAGIKLTPKHYAYLKISEGCN 168

Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLD 241
             CTFC++P  RG  +SR +  V++EAR L + GV E+ ++ Q+ +A+      R    D
Sbjct: 169 HRCTFCIIPSMRGDLVSRPIGDVLNEARALFEGGVKELLVISQDTSAYGVDVKYRTGFWD 228

Query: 242 GE--KCTFSDLLYSLSEI----KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPV 295
           G+  K    +L+ +L +I       VRL Y   +P       + A G    ++PYL +P+
Sbjct: 229 GKPVKTRMLELVQALGDIAEPYGAWVRLHYVYPYPSVDEVLPLMATG---KVLPYLDVPL 285

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
           Q     +LK M R  +  +  + I R R + P+I I S FI GFPGET+ +F   ++ + 
Sbjct: 286 QHSHPDVLKRMKRPASGEKNLERIARWREICPEIVIRSTFIAGFPGETEAEFAHLLEFMR 345

Query: 356 KIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIE 415
           +    +A  F YS   G   +++   +   V+ ER         E         VG  ++
Sbjct: 346 EARIDRAGCFAYSAVEGATANDIPGMLPLEVREERRARFMAVAEEVSSLKLQQRVGATMQ 405

Query: 416 VLIEKH---GKEK--GKLVGRSPWLQSVV------LNSKNHNIGDIIKVRITDVKISTLY 464
           VL++     G++   G+    +P +  VV        SK   +G+  + RI   +   L 
Sbjct: 406 VLVDSAPALGRKGGTGRSYADAPEIDGVVKLLPPEKISKTLKVGEFTRARIVGTQGHDLV 465

Query: 465 GELV 468
              V
Sbjct: 466 AIPV 469


>gi|300175767|emb|CBK21310.2| unnamed protein product [Blastocystis hominis]
          Length = 500

 Score =  329 bits (845), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 133/477 (27%), Positives = 223/477 (46%), Gaps = 65/477 (13%)

Query: 36  MNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRI 95
           MN  DS  ME +    G     + ++AD+I++NTC +RE A  ++++ L + RNL     
Sbjct: 1   MNRADSEIMETLLSECGMTESKNEEEADVIIMNTCSVREHAESRIWNRLKQFRNLDKKYK 60

Query: 96  KEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYS 155
           K     ++ ++GC+A     ++L     V+VVVGP +Y  LP L+  A  GK+   T+ +
Sbjct: 61  K---RTILCISGCMATRLRTKLLES--GVDVVVGPDSYVHLPPLIFDAFNGKQAFHTELN 115

Query: 156 VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEAR 215
             + ++ +S               +TI  GC+  C++CVVPYTRG E S  +  V+ E +
Sbjct: 116 GNNDYDAISPSFLEPL----PATQITIMRGCNNMCSYCVVPYTRGRERSVDVDVVLREVK 171

Query: 216 KLIDNGVCEITLLGQNVNAWRGKGLDGEKC---------------------TFSDLLYSL 254
           +  ++G  EI LLGQNVN++  +    +                        F +LL  +
Sbjct: 172 RAEEHGYKEIMLLGQNVNSYCDRSHLAKGSEKYETTPGFRSPTSTKAKTGILFPELLRLV 231

Query: 255 SEIKGLVRLRYTTSHPR-----------DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
           +E     R+R+ + HP+           D    +++   +   +   LHLP+QSGS+  L
Sbjct: 232 AEEVPETRIRFMSPHPKVEIGGRKIYLKDFPMSVLEVIAEHPNICRSLHLPLQSGSNSCL 291

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           + MNR +T   + Q++D IRS+ PD AIS+D I GF GET+ +   T++L+ +IG+  AF
Sbjct: 292 QRMNRPYTREAFIQLVDAIRSILPDCAISTDVIAGFCGETEAEHADTVELMREIGFDHAF 351

Query: 364 SFKYSPRLGTPGSNM-LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422
            + YS R  T       + +   VK  RL+ +Q            +  G++  VL+E   
Sbjct: 352 MYLYSMRENTYAWRYFKDDIPLEVKKRRLVEIQDAFYSTLREKLPSQKGKVELVLVEGES 411

Query: 423 KE----KGKLVGRSPWLQSVVLN-------------------SKNHNIGDIIKVRIT 456
           K     + ++ GR    +  V +                   +K   +G+ +  RI 
Sbjct: 412 KRSKPGEMQMKGRCDGNRMCVFDVKPVFETIQDYRANAEGKRTKEIRVGEYVACRIE 468


>gi|15643593|ref|NP_228639.1| hypothetical protein TM0830 [Thermotoga maritima MSB8]
 gi|14916854|sp|Q9WZT7|Y830_THEMA RecName: Full=Putative methylthiotransferase TM_0830
 gi|4981362|gb|AAD35912.1|AE001750_6 conserved hypothetical protein [Thermotoga maritima MSB8]
          Length = 434

 Score =  329 bits (844), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 119/437 (27%), Positives = 228/437 (52%), Gaps = 24/437 (5%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +   ++++GC++N Y+S  M +     GY  +   + A   ++N+C + ++  +KV   +
Sbjct: 2   KTVRIETFGCKVNQYESEYMAEQLEKAGYVVLPDGNAA-YYIVNSCAVTKEVEKKVKRLI 60

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             IRN          +  +++ GC AQ   +E       V++V+G      + + +  + 
Sbjct: 61  KSIRN-------RNKNAKIILTGCFAQLSPDEAKNLP--VDMVLGIDEKKHIVDHIN-SL 110

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG-IEI 203
            GK+ V         +E++       + +    +++ +++GCD  CT+C +   RG    
Sbjct: 111 NGKQQVVVSEPGRPVYEKVK-----GSFEDRTRSYIKVEDGCDNTCTYCAIRLARGTRIR 165

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           S+ L    +E  +++  G  EI + G N+    GK +     + ++LL  + ++ G  R+
Sbjct: 166 SKPLEIFKEEFAEMVMKGYKEIVITGVNLG-KYGKDM---GSSLAELLKVIEKVPGDYRV 221

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R ++ +  D++D ++KA      L P+LH+ VQSGSD +LK M R++   ++ +++D++R
Sbjct: 222 RLSSINVEDVNDEIVKAFKRNPRLCPHLHISVQSGSDDVLKRMGRKYKISDFMRVVDKLR 281

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           S+ PD +I++D IVGFPGETD DF+ T++LV+K+ +++   F++SPR GTP S M   V 
Sbjct: 282 SIDPDFSITTDIIVGFPGETDADFQRTLELVEKVEFSRVHIFRFSPRPGTPASRMEGGVP 341

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
           E+ K ERL  L++K ++  + +    +G+  +VL E     KG L G   +         
Sbjct: 342 ESKKKERLDVLKEKAKDVSIRYRKRIIGKERKVLAE-WYVMKGVLSGYDEYYVKHEFVG- 399

Query: 444 NHNIGDIIKVRITDVKI 460
            + +G+   VR+  +  
Sbjct: 400 -NRVGEFHSVRVKSLSE 415


>gi|14591622|ref|NP_143704.1| hypothetical protein PH1875 [Pyrococcus horikoshii OT3]
 gi|3258314|dbj|BAA30997.1| 432aa long hypothetical protein [Pyrococcus horikoshii OT3]
          Length = 432

 Score =  329 bits (844), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 111/447 (24%), Positives = 215/447 (48%), Gaps = 27/447 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + ++++YGC  N  D   M  + +  G+E V S ++++++V+N+C +++    K+   + 
Sbjct: 10  KVYIENYGCARNRADGEIMAALLYLSGHEIVESPEESEIVVVNSCAVKDPTERKIARRIR 69

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            + +             V+V GC+     + I      V+ ++G ++  R+ + +E A  
Sbjct: 70  ELLD---------NGKKVIVTGCLPHVNPDVI---DERVSAILGVKSIDRIVQAVEYAMR 117

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G++++      +   ++L   D      R V   L I EGC   CT+C     RG+  S 
Sbjct: 118 GEKLISVPDWKKRNLDKL---DFPRLSPRNVYFILPIAEGCLNACTYCATRLARGVLKSY 174

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           S  +++   +  I  G  EI L  ++     G  +       + L+  ++ I+G  R+R 
Sbjct: 175 SPEKIIGWVKWAIKQGYKEIWLSAEDTG-CYGFDI---GTNLAKLIDEITAIEGEFRIRV 230

Query: 266 TTSHPRD---MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
              +P       D LI A+ D + +  +LHLPVQSG + IL+ M R +T  E+ +I+   
Sbjct: 231 GMMNPNHVLKFLDELIDAYKD-EKVYKFLHLPVQSGDNEILRKMGRMYTVEEFEEIVKAF 289

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R   P++ + +D IVGFPGE+++ F+ +++L+ +I   +    +YSPR GT  +   +Q+
Sbjct: 290 RREFPELNLHTDIIVGFPGESEEAFQRSVELIKRIRPDKVNVSRYSPRPGTIAAKW-KQL 348

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
              V  ER   L +   +     N   +G+ ++VLI   GK+ G +   +   + ++L  
Sbjct: 349 PGWVVKERSRLLHRIRLQISYEINRKYIGKKVKVLIHGEGKK-GNVDAVTMNYKHIILP- 406

Query: 443 KNHNIGDIIKVRITDVKISTLYGELVV 469
                G+  + R+ +   + L GE++ 
Sbjct: 407 -EGRKGEFREARVKNAASTYLLGEIIT 432


>gi|307207026|gb|EFN84849.1| CDKAL1-like protein [Harpegnathos saltator]
          Length = 542

 Score =  329 bits (844), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 118/463 (25%), Positives = 209/463 (45%), Gaps = 24/463 (5%)

Query: 11  AHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC 70
           A   S +       Q  +VK++GC  N  D+  M     +QGY  ++    ADL +LN+C
Sbjct: 40  APQPSLLSSIIPGTQTVYVKTWGCTHNSSDAEYMAGQLAAQGYNLIDDKLKADLWLLNSC 99

Query: 71  HIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGP 130
            ++  A ++  + +        +  K G    +VVAGCV Q   +    +      ++G 
Sbjct: 100 TVKNPAEDQFRNEI-------ENGRKAGKH--IVVAGCVPQGAPKSPFLKG---LSIIGV 147

Query: 131 QTYYRLPELLERARFGKRVVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDK 188
           Q   R+ E++E    G  V            ++  S ++    RK      + I  GC  
Sbjct: 148 QQIDRVVEVVEETLKGHTVRFLRTKKNSTGRKIGGSTLNLPKIRKNPRIEIIAISTGCLN 207

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS 248
            CT+C   + RG   S    ++V  A +  + GVCE+ +  ++  A  G+ +        
Sbjct: 208 QCTYCKTKHARGQLGSYPPDEIVARALQAFEEGVCELWITSEDTGA-YGRDI---GTNLP 263

Query: 249 DLLYSLSE-IKGLVRLRYTTSHPRDMSDCL--IKAHGDLDVLMPYLHLPVQSGSDRILKS 305
           +LL+ L + I     +R   ++P  + + L  I        +  +LH+PVQSGSD++L  
Sbjct: 264 ELLWKLVDVIPESCMMRIGMTNPPYILEHLDEIAKILRHPKVYSFLHIPVQSGSDQVLAD 323

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           M R +T  ++  +++ +R   PD+ I++D I GFP ET+++F  T+ L  K  +   F  
Sbjct: 324 MKREYTRADFEHVVNYLRERVPDLTIATDIICGFPSETEENFEETLTLCRKYKFPSLFIN 383

Query: 366 KYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK 425
           ++ PR GTP + M  ++       R   L +          +  VG++  VL+ +   +K
Sbjct: 384 QFFPRPGTPAARMP-RIPTQQVKARTKKLTELFY--SYEPYENQVGKLCCVLVTEVAHDK 440

Query: 426 GKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
              VG + +   V+L  +   +G +I VRIT+    ++  E V
Sbjct: 441 LHYVGHNKFYGQVLLPKEEEYMGMMILVRITEATKFSMKAEYV 483


>gi|237746819|ref|ZP_04577299.1| fe-s oxidoreductase [Oxalobacter formigenes HOxBLS]
 gi|229378170|gb|EEO28261.1| fe-s oxidoreductase [Oxalobacter formigenes HOxBLS]
          Length = 468

 Score =  329 bits (844), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 118/468 (25%), Positives = 194/468 (41%), Gaps = 46/468 (9%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +     S GC   + DS R+     ++GYE   +  DA L+++NTC   + A  +    +
Sbjct: 5   KTVGFVSLGCPKALVDSERILTRLRAEGYETAETYKDAGLVIVNTCGFIDAAEAESLEAI 64

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEE----ILRRSPIVNVVVGPQTYYRLPELL 140
                             V+V GC+   +       I    P V  V GP +  ++ + +
Sbjct: 65  AEALEENGK---------VIVTGCLGAKKDGAGAGFIKSVLPKVLEVTGPDSVQQVMDAV 115

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
            R               + F  L    G     R   A+L I EGC   CTFC++P  RG
Sbjct: 116 HRHLP---------RPHEPFVDLVPPQGIKLTPRHY-AYLKISEGCSHHCTFCIIPDLRG 165

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSD 249
             IS S+ +V+DEA  L  +GV E+ ++ Q+  A           W G+ +       ++
Sbjct: 166 SLISYSVGKVLDEAEMLFQSGVKELLVISQDTGAYGLDIQFRTGFWNGRPVRTHVTQLTE 225

Query: 250 LLYSLSEIKG-LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
            L  L+   G  VRL Y   +P       +    +   ++PYL +P Q     +LK M R
Sbjct: 226 QLGRLARKYGAWVRLHYIYPYPHIDDLLPLM---NEGGVLPYLDVPFQHAHPDVLKRMRR 282

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
             +  ++ + I   R + PD+ I S FI GFPGET+ +F   +D + +    +   F YS
Sbjct: 283 PASGEKHLERIQTWRKMCPDMTIRSTFIAGFPGETEAEFTYLLDFLKEARIDRLGCFPYS 342

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--G 426
           P  G   +++   V E ++ ER   L +             +G+ + VL+++  +    G
Sbjct: 343 PVEGAKANDLPGAVPEEIREERRARLMQLQEAISYERLQEKIGKTLRVLVDETIRGGALG 402

Query: 427 KLVGRSPWLQSVVLNSKN------HNIGDIIKVRITDVKISTLYGELV 468
           +    +P +  VV   K          G+ + V I D     L+GE+V
Sbjct: 403 RSSADAPEIDGVVYVRKPKGMRRKLAPGEFVDVLIHDADAHDLWGEMV 450


>gi|157129375|ref|XP_001661661.1| radical sam proteins [Aedes aegypti]
 gi|108872257|gb|EAT36482.1| radical sam proteins [Aedes aegypti]
          Length = 558

 Score =  329 bits (844), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 115/469 (24%), Positives = 206/469 (43%), Gaps = 33/469 (7%)

Query: 11  AHMVSQIVDQCIVP--QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLN 68
           A +  + V + ++P  Q  ++K++GC  N  DS  M     S GY   +   DADL +LN
Sbjct: 50  AAVPEKSVLESVIPGTQSIYLKTWGCAHNNSDSEYMAGQLASYGYNITSDKSDADLWLLN 109

Query: 69  TCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVV 128
           +C ++  + +   + +     +            VV+AGCV QA  +           +V
Sbjct: 110 SCTVKNPSEDTFRNEIQAANKM---------GKHVVLAGCVPQAAPKSDYMHG---LSIV 157

Query: 129 GPQTYYRLPELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCD 187
           G     R+ E++E    G  V +     +  K      +     RK  +   + I  GC 
Sbjct: 158 GVHQIDRVTEVVEETLKGHSVRLLQAKKLNGKRVAGPQLALPKVRKNPLIEIIPINSGCL 217

Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTF 247
             CT+C   + R   +S  + ++V  A  +   GVCEI L  ++     G+ +     + 
Sbjct: 218 NACTYCKTKFARADLVSYPVEEIVQRAAHVFTEGVCEIWLTSEDTGT-YGRDI---GTSL 273

Query: 248 SDLLYSLSEIK--------GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
            +LL+ L  +         G+    Y   H  +M+  L+        +  +LH+P+QSGS
Sbjct: 274 PELLWQLVAVIPDGCMLRLGMTNPPYILEHLEEMAKILVH-----PKVYSFLHVPIQSGS 328

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
           D +L  M R +   ++ QI+D +    P I I++D I GFP ET++DF  TM L +K  +
Sbjct: 329 DSVLSDMKREYCRSDFEQIVDFLNDKVPGITIATDIICGFPTETEEDFEHTMTLCEKYKF 388

Query: 360 AQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419
              F  ++ PR GTP + M +++  +    R   L       +       +G   +VL+ 
Sbjct: 389 PSLFINQFYPRPGTPAAKM-QRIPADQVKVRTKRLTDLFYTYEPYVGKYVLGDRQKVLVT 447

Query: 420 KHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           +   +K   VG +   + V+L    + +G +++V I  +   ++  ++V
Sbjct: 448 EISHDKKHYVGHNKCYEQVLLPMDKNLLGKLVEVEIVGITKFSMLAKVV 496


>gi|253580717|ref|ZP_04857981.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848088|gb|EES76054.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 422

 Score =  329 bits (844), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 119/429 (27%), Positives = 218/429 (50%), Gaps = 14/429 (3%)

Query: 44  MEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLV 103
           M+ +    GYE V     AD+ ++NTC +   A  K    L + +       K   D +V
Sbjct: 1   MQQLLEEAGYEIVPFEPGADVYLINTCTVTNIADRKSRQMLHKAK-------KMNPDAIV 53

Query: 104 VVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERL 163
           + AGC  Q + E  L +   V++++G      + ++LE              +    E  
Sbjct: 54  IAAGCYVQTD-EGKLDKDEAVDLILGNNQKGNIVQVLEEYEQQHTKQKHVLKINQTKEYE 112

Query: 164 SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVC 223
            +          V A++ +Q+GC++FCT+C++PY RG   SR ++ V+DE   L   G  
Sbjct: 113 ELAIDH--TAEHVRAYIKVQDGCNQFCTYCIIPYARGRVRSRKIAHVMDEVHALAAKGYK 170

Query: 224 EITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGD 283
           E+ L G +++++       EK T   L+ ++ E++G+ R+R  +  P  +++  +++   
Sbjct: 171 EVVLTGIHLSSYGVDFPAEEKETLLSLIRAVHEVEGIERIRLGSLEPGIITEEFVQSIAA 230

Query: 284 LDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGET 343
           L  + P+ HL +QSG D  L+ MNRR+ + EY +    +R    + A+++D IVGFP ET
Sbjct: 231 LPKMCPHFHLSLQSGCDTTLERMNRRYRSAEYAEKCGLLRKYLGNPALTTDVIVGFPMET 290

Query: 344 DDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQV 403
           ++DF+ + D V+ I + +   FKYS R GT  + M  Q+ E  KA R   +     +   
Sbjct: 291 EEDFQDSYDFVESIHFYETHIFKYSRRHGTKAAAMSGQLTEAQKAVRSDKMLALNEQHAK 350

Query: 404 SFNDACVGQIIEVLIEKHGKEKGK--LVGRS-PWLQSVVLNSKNHNIGDIIKVRITD-VK 459
            +  + +G  ++VL+E+  +  G+   +G S  ++++ V    N+++ DII V+  + ++
Sbjct: 351 EYEKSMLGGELKVLLEEEVEINGEQWYIGHSMEYIKTAVKKQDNYSVNDIITVKAEEFLE 410

Query: 460 ISTLYGELV 468
             TL GE++
Sbjct: 411 EHTLTGEVL 419


>gi|99080490|ref|YP_612644.1| hypothetical protein TM1040_0649 [Ruegeria sp. TM1040]
 gi|123252523|sp|Q1GIY4|RIMO_SILST RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|99036770|gb|ABF63382.1| hypothetical protein TM1040_0649 [Ruegeria sp. TM1040]
          Length = 467

 Score =  329 bits (844), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 123/476 (25%), Positives = 207/476 (43%), Gaps = 49/476 (10%)

Query: 9   GVAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLN 68
           G A    Q            + S GC   + DS R+     ++GY        AD +++N
Sbjct: 19  GTAPRPDQP--------TLGMVSLGCPKALVDSERILTRLRAEGYGISADYAGADAVIVN 70

Query: 69  TCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVV 128
           TC   + A  +    +G    LK +         V+V GC+  AE + I    P +  V 
Sbjct: 71  TCGFLDSAKAESLEAIGEA--LKENGK-------VIVTGCLG-AEPDYIREHHPRILAVT 120

Query: 129 GPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
           GP  Y ++ + +  A              D F  L    G     R   ++L I EGC+ 
Sbjct: 121 GPHQYEQVLDAVHAA---------VPPSPDPFVDLLPATGVSLTPRHF-SYLKISEGCNH 170

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-------RGKGLD 241
            C FC++P  RG   SR    V+ EA KL+  GV E+ ++ Q+ +A+            D
Sbjct: 171 KCKFCIIPDMRGKLASRPAHAVLREAEKLVTAGVRELLVISQDTSAYGLDRKYDVNPWKD 230

Query: 242 GE-KCTFSDLLYSLSEIKG----LVRLRYTTSHPRDMSDCLIKAHGDLDV-LMPYLHLPV 295
           GE +   +DL  +L E+       VRL Y   +P      LI    D +  ++PYL +P 
Sbjct: 231 GEVRSHITDLSRALGELAPADQLWVRLHYVYPYPHV--RELIPLMADPENAVLPYLDIPF 288

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
           Q     +L+ M R   A +    I   R++ PDI + S FIVG+PGET+ +F+  +D +D
Sbjct: 289 QHAHPDVLRRMARPAAAAKTLDEIRAWRAICPDITLRSTFIVGYPGETEAEFQHLLDWMD 348

Query: 356 KIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIE 415
           +    +   FKY    G   +++ + V E VK  R     +K +    +   + VGQ ++
Sbjct: 349 EAQLDRVGCFKYENVDGARSNDLPDHVAEEVKQNRWERFMEKAQAISEAKLASKVGQTLQ 408

Query: 416 VLIEKHGKEK---GKLVGRSPWLQSVVLNSK---NHNIGDIIKVRITDVKISTLYG 465
           V++++  ++     +    +P +   +   +   N ++GD++ V + +     L+G
Sbjct: 409 VIVDEIDEDGIATCRTKADAPEIDGNLFIDEGTANLSVGDLVTVEVDEAGEYDLWG 464


>gi|229828421|ref|ZP_04454490.1| hypothetical protein GCWU000342_00482 [Shuttleworthia satelles DSM
           14600]
 gi|229793015|gb|EEP29129.1| hypothetical protein GCWU000342_00482 [Shuttleworthia satelles DSM
           14600]
          Length = 450

 Score =  329 bits (843), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 115/435 (26%), Positives = 211/435 (48%), Gaps = 24/435 (5%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +R  + + GC++N Y++  M+ M  + GY+ V   D AD+ ++NTC +   A  K    +
Sbjct: 2   RRAALHNLGCKVNSYETEAMQQMLEAAGYQIVPFQDQADVYIINTCSVTNMADAKSRQMI 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R R       ++  D +VV  GC  Q    E       +++++G     +L   ++  R
Sbjct: 62  HRAR-------RKNPDAIVVATGCYVQTSAGE-AEEDLSIDIIIGNNRKTQLVRAIDEFR 113

Query: 145 FGKRVVD--TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
              R V    + S +  +ERL +            AF+ +Q+GC++FC++C++P  RG  
Sbjct: 114 RDHRRVKELAEDSRQPDYERLQLTR----TAEHTRAFIKVQDGCNQFCSYCIIPLARGRI 169

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT--------FSDLLYSL 254
            SRS   V+ E R L  +G  E+ L G +++++     + +  +          +L+ ++
Sbjct: 170 RSRSPKDVLKEVRGLAASGYQEVVLNGIHLSSYGMTSYNRQVASEEMAGGGHLMELVEAV 229

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
           + ++G+ R+R  +  PR +     +    ++ + P+ HL +QSG D  LK MNRR+T  +
Sbjct: 230 AGVEGIRRIRLGSMEPRLVDRAFAERLARVEKICPHFHLSLQSGCDETLKRMNRRYTTQD 289

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
           +RQ +  +R      AI++D IVGFP ET+++F A+   +++I + +   FKYS R GT 
Sbjct: 290 FRQAVALLRENFAHPAITTDVIVGFPQETEEEFEASRHFLEEIRFYEMHIFKYSRRRGTL 349

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE--KHGKEKGKLVGRS 432
              M  Q+DE  K+ R   L          F    +G+  EVL+E  +  + +    G +
Sbjct: 350 ADTMPGQLDEETKSRRSHVLLALADRMSAEFRRQEIGREAEVLMEVKEILRGEEYWTGFT 409

Query: 433 PWLQSVVLNSKNHNI 447
                  + +   ++
Sbjct: 410 REYVRAAVKADGRDL 424


>gi|331002891|ref|ZP_08326404.1| MiaB-like tRNA modifying enzyme [Lachnospiraceae oral taxon 107
           str. F0167]
 gi|330413184|gb|EGG92558.1| MiaB-like tRNA modifying enzyme [Lachnospiraceae oral taxon 107
           str. F0167]
          Length = 457

 Score =  329 bits (843), Expect = 7e-88,   Method: Composition-based stats.
 Identities = 129/457 (28%), Positives = 222/457 (48%), Gaps = 37/457 (8%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +     + GC++N Y++  M+ +  + GY+ V   + AD+ ++NTC +   A  K    L
Sbjct: 2   KTVAFHTLGCKVNTYETEAMQQLMENAGYKCVEFGERADVYIINTCSVTNIADRKSRQML 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R R       K   D +VV AGC  ++   +I      ++++VG      +  ++    
Sbjct: 62  HRAR-------KMNEDAIVVAAGCYVESAKNKIDEDLS-IDIIVGNNNKNEIVNIINEFL 113

Query: 145 FGK--RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
             K       D + E ++E   I            AF+ +Q+GC++FC++C++P+TRG  
Sbjct: 114 QNKSENKFIIDINKETEYEEFHIRKIN----DHTRAFIKVQDGCNQFCSYCIIPFTRGRV 169

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG-------------------- 242
            SR +  +++E R L  +G  EI L G +++++    LD                     
Sbjct: 170 RSRKMENIMEEVRNLAASGYKEIVLTGIHLSSYGLDFLDESYNKRMEKLTNTCESDEEFV 229

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
            K     L+ +++ I G+ R+R  +  PR + +  IK+   ++   P+ HL +QSG D+ 
Sbjct: 230 TKNDLLCLIENIAGIDGVERVRIGSLEPRIIKENFIKSLSKIEKFCPHFHLSLQSGCDKT 289

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           LKSMNR++TA E+ + +  IR      A+++D IVGFPGET  DF  +   V+K+ + + 
Sbjct: 290 LKSMNRKYTADEFFEGVKLIRKYFDSPAVTTDIIVGFPGETKKDFEESKKFVEKVKFYET 349

Query: 363 FSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422
             F YS R GT  +NM  QVD N K +R   L +     Q  F  + +G+  E+L E+  
Sbjct: 350 HIFPYSIREGTKAANMP-QVDGNEKVKRANILNEININNQKEFKSSRIGKEDELLCEEIF 408

Query: 423 KEKG--KLVGRSPWLQSVVLNSKNHNIGDIIKVRITD 457
            + G     G +     V + + +++  DII+ RIT 
Sbjct: 409 IKDGVEYFTGYTKEYIKVAVLNSDYSTNDIIRGRITG 445


>gi|193212430|ref|YP_001998383.1| MiaB-like tRNA modifying enzyme YliG [Chlorobaculum parvum NCIB
           8327]
 gi|238065322|sp|B3QMN0|RIMO_CHLP8 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|193085907|gb|ACF11183.1| MiaB-like tRNA modifying enzyme YliG [Chlorobaculum parvum NCIB
           8327]
          Length = 437

 Score =  329 bits (843), Expect = 7e-88,   Method: Composition-based stats.
 Identities = 112/448 (25%), Positives = 190/448 (42%), Gaps = 33/448 (7%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
            F+ S GC  N  DS R+     + G    + +D+A +I++NTC   E A ++    +  
Sbjct: 11  IFLLSLGCSKNTVDSERLTAQAVASGLTFTDDVDEASIILINTCGFIEDAKKESIDEMLA 70

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
               K      G    V V GC+ +   +E+    P V+   G +    +   +      
Sbjct: 71  AIGKKEE----GIVREVYVMGCLVELYRKELSEEMPEVDGWFGTRQLPDVLAAIGAHYCE 126

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           +                 + D          AFL I EGC++ C+FC +P  RG  +S+ 
Sbjct: 127 E-----------------LYDRRELLTPPHYAFLKISEGCNRRCSFCSIPKIRGPYVSQP 169

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
           + Q++ EA  L + GV E+ L+ Q++ +  G  L G K   +DL   LS++ G   +R  
Sbjct: 170 IEQLLREAALLQEQGVRELNLIAQDI-SVYGYDLYG-KPALNDLTLRLSDM-GFDWIRLL 226

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
            ++P +    +I        +  YL +P+Q  +DRILKSM R        ++ID IR   
Sbjct: 227 YAYPLNFPLEVIDTMRQRRNVCNYLDMPLQHINDRILKSMQRGIGRKGTEELIDAIRQKN 286

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           PDI + +  I G+P ET ++F   +D V +  + +   F Y      P   + + + +  
Sbjct: 287 PDIRLRTTMIAGYPSETREEFDELLDFVRQARFDRLGCFPYRHEEHAPAYALEDTISDKE 346

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPW------LQSVVL 440
           K ER+  L +       S N    GQ + VLI++   E     GR+ +         ++ 
Sbjct: 347 KEERVGELMELQESIAASLNRKLEGQTLTVLIDRI--EDNVAYGRTEYDAPEVDNDVIIE 404

Query: 441 NSKNH-NIGDIIKVRITDVKISTLYGEL 467
                   G+  +V + D     L+G +
Sbjct: 405 IGDEAVEEGEFRQVTVEDSTAYELFGRV 432


>gi|308809904|ref|XP_003082261.1| Predicted Fe-S oxidoreductase (ISS) [Ostreococcus tauri]
 gi|116060729|emb|CAL57207.1| Predicted Fe-S oxidoreductase (ISS) [Ostreococcus tauri]
          Length = 440

 Score =  329 bits (843), Expect = 8e-88,   Method: Composition-based stats.
 Identities = 114/473 (24%), Positives = 196/473 (41%), Gaps = 50/473 (10%)

Query: 14  VSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIR 73
           +S        P R  + S GC  N  D   +     + G+E  +  + AD I++N+C   
Sbjct: 1   MSPPAPGAGRP-RVSMVSLGCPKNTVDGEVILGDLHANGFEITDDHEAADAIIINSCGFV 59

Query: 74  EKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTY 133
           E A  +    +     L+    +   D  ++V GC+AQ    ++    P  +V+VG + Y
Sbjct: 60  EDAKNESVEAILEAAKLRTESGRS--DTKIIVTGCLAQRYANDLANELPEADVIVGFENY 117

Query: 134 YRLPELLERARFGKRVVDTDYSVEDKFE---RLSIVDGGYNRKR---GVTAFLTIQEGCD 187
             LP  +  A   +         + + +             R R      A+L + EGCD
Sbjct: 118 GNLPRTVGGALGVEATPGVLLPQQARVQVGGASPPFREETKRLRITPRHYAYLRVAEGCD 177

Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTF 247
             CTFC +P  RG   S+    +VDEA+ L D+GV E+ L+ ++ N W       +    
Sbjct: 178 HKCTFCAIPSFRGRFRSKPFGAIVDEAKALADSGVRELNLIAEDTNQWGMDLRASDGRGL 237

Query: 248 SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307
           ++LLY+L+E+ G+  +R   ++P   SD LI+A                           
Sbjct: 238 AELLYALAEVDGIEWMRILYAYPSYFSDELIQAIRTXX---------------------- 275

Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
                        ++R   P +A+ + FI GFPGET+++    M       + +  +F Y
Sbjct: 276 --------XXXXXKLRDRIPGLALRTTFISGFPGETEEEHNELMQFCRDFKFERLGAFAY 327

Query: 368 SPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK 427
           S   GTP     +QV E+V+A R   L  + +E    F  + VG+ ++VLI+    +   
Sbjct: 328 SEEDGTPAMEYPDQVPEDVRAFRRDQLVSQQQEISEDFAMSRVGKDVDVLIDSWDDDMQA 387

Query: 428 LVGRS----PWLQSVVLNSKNH-------NIGDIIKVRITDVKISTLYGELVV 469
            +GR+    P +  VV  +++          G + K  I    +  L  + ++
Sbjct: 388 FIGRTTLEAPDIDPVVFVTEDESKGLPPIKPGQMRKCNIIGSSLFDLEAQPIM 440


>gi|153812695|ref|ZP_01965363.1| hypothetical protein RUMOBE_03102 [Ruminococcus obeum ATCC 29174]
 gi|149831211|gb|EDM86300.1| hypothetical protein RUMOBE_03102 [Ruminococcus obeum ATCC 29174]
          Length = 419

 Score =  329 bits (843), Expect = 8e-88,   Method: Composition-based stats.
 Identities = 122/416 (29%), Positives = 224/416 (53%), Gaps = 17/416 (4%)

Query: 44  MEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLV 103
           M+ +  + GYE V   + AD+ V+NTC +   A  K    L + +       K   D +V
Sbjct: 1   MQQLLENAGYETVPFEEGADVYVINTCTVTNIADRKSRQMLHKAK-------KMNPDAIV 53

Query: 104 VVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR--FGKRVVDTDYSVEDKFE 161
           V  GC AQA+ E++ +    V++++G     ++ E LE       K+V   + +   ++E
Sbjct: 54  VATGCYAQADTEKL-KEDTAVDLILGNNQKTQIVEALEEYEKEHAKQVQVIEINHTKEYE 112

Query: 162 RLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNG 221
            LSI     +    V A++ +Q+GC++FCT+C++P+ RG   SR +  V+ E   L   G
Sbjct: 113 ELSIA----STAEHVRAYIKVQDGCNQFCTYCIIPFARGRVRSRKIEDVLREVETLAAKG 168

Query: 222 VCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAH 281
             E+ L G +++++       E+ +   L+ ++S ++G+ R+R  +  PR +++  ++  
Sbjct: 169 YKEVVLTGIHLSSYGVDFPKEERESLLSLIQAVSRVEGISRIRLGSLEPRIITEEFLEGI 228

Query: 282 GDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPG 341
                + P+ HL +QSG ++ LK+MNRR++A EY +  + IR   P  A+++D IVGFP 
Sbjct: 229 VKTGKVCPHFHLSLQSGCNKTLKNMNRRYSAQEYAEKCELIRKFYPAPALTTDVIVGFPQ 288

Query: 342 ETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQ 401
           ET++DF  + + V KI + +   FKYS R GT  ++M  Q+ E  KA+R   + +    +
Sbjct: 289 ETEEDFEESYEFVKKIHFYETHIFKYSRRHGTKAASMDGQLTEAAKAQRSDRMLELHEIR 348

Query: 402 QVSFNDACVGQIIEVLIEKHGKEKGK--LVGRSPWLQSVVLNSKN-HNIGDIIKVR 454
              + +A +G+ +E+L+E+  +  G+   VG S      V++  + H + D++ V+
Sbjct: 349 AREYEEAMIGKKMELLLEEEIEIDGRPWYVGHSREYVRAVISKTDVHRVNDLVTVK 404


>gi|163737731|ref|ZP_02145148.1| hypothetical protein RGBS107_19408 [Phaeobacter gallaeciensis
           BS107]
 gi|161389257|gb|EDQ13609.1| hypothetical protein RGBS107_19408 [Phaeobacter gallaeciensis
           BS107]
          Length = 473

 Score =  329 bits (843), Expect = 8e-88,   Method: Composition-based stats.
 Identities = 120/456 (26%), Positives = 200/456 (43%), Gaps = 41/456 (8%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           + S GC   + DS R+     ++GY        AD +++NTC   + A  +    +G   
Sbjct: 36  MVSLGCPKALVDSERILTRLRAEGYGVSPDYSGADAVIVNTCGFLDSAKAESLEAIGEA- 94

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
            LK +         V+V GC+  AE + I    P +  V GP  Y ++ + +  A     
Sbjct: 95  -LKENGK-------VIVTGCLG-AEPDYIRAHHPRILAVTGPHQYEQVLDAVHAA----- 140

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
                 S     + L     G        ++L I EGC+  C FC++P  RG   SR   
Sbjct: 141 ---VPPSPNPYVDLLPAA--GVKLTPRHFSYLKISEGCNHKCKFCIIPDMRGKLASRPAH 195

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAW-------RGKGLDGE-KCTFSDLLYSLSEIKG- 259
            V+ EA KL+D GV E+ ++ Q+ +A+            DGE +    DL   L  +   
Sbjct: 196 AVLREAEKLVDAGVRELLVISQDTSAYGLDRKYDVNPWKDGEVRSHIQDLSRELGRLAPA 255

Query: 260 ---LVRLRYTTSHPRDMSDCLIKAHGDLDV-LMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
               VRL Y   +P      LI    D D  L+PYL +P Q     +L+ M R   A + 
Sbjct: 256 DELWVRLHYVYPYPHV--RELIPLMADPDNALLPYLDIPFQHAHPDVLRRMARPAAAAKT 313

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
              I+  R+  PDI + S FIVG+PGET+ +F+  +D +D+    +   FKY    G   
Sbjct: 314 LDEINAWRATCPDITLRSTFIVGYPGETEAEFQHLLDWMDEAQLDRVGCFKYENVDGARS 373

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK---GKLVGRS 432
           +N+ + V E VK +R     +K +    +   A VGQ ++V+++   ++     +    +
Sbjct: 374 NNLADHVPEEVKQDRWDRFMEKAQAISEAKLAAKVGQTMQVIVDDIDEDGIATCRTKADA 433

Query: 433 PWLQSVVL---NSKNHNIGDIIKVRITDVKISTLYG 465
           P +   +    ++    +G+++ V + +     L+G
Sbjct: 434 PEIDGNLFIDEDTDGLQVGELVTVEVDEAGEYDLWG 469


>gi|15920732|ref|NP_376401.1| hypothetical protein ST0515 [Sulfolobus tokodaii str. 7]
 gi|15621515|dbj|BAB65510.1| 418aa long conserved hypothetical protein [Sulfolobus tokodaii str.
           7]
          Length = 418

 Score =  329 bits (843), Expect = 8e-88,   Method: Composition-based stats.
 Identities = 120/445 (26%), Positives = 219/445 (49%), Gaps = 31/445 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + ++++YGC +N  DS  M  +   +G++ V+S + AD+IVLNTC +R +  E++   + 
Sbjct: 2   KVYIETYGCALNKGDSYIMMTLLKDRGHDIVDSYNQADVIVLNTCAVRLETEERMKQRIK 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            ++ +            +++AGC+  ++   ++  +P  ++V G Q+  +   ++E    
Sbjct: 62  ELKKIGKK---------LIIAGCLVSSQPALVMSLAPESSIV-GAQSIDK---IVEAVES 108

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            KR +  + S E    R+           G  + + I +GC   C FC+    R    S 
Sbjct: 109 NKRGIFLEESKELVTPRI---------FEGKISIIPIADGCAGDCNFCITKLARKKLRSY 159

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG--LVRL 263
               +V+  ++ +  G  EI L  Q+  A  G  ++       +LL  + EI+G  ++R+
Sbjct: 160 PPRNIVNAVKEAVQKGAVEIELTAQDTAA-YGLDIN---YNLVELLKEILEIEGNYMIRI 215

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
              T          I        +  +LHLPVQSG DR+LK MNR++T  EYR+++  IR
Sbjct: 216 GMMTPELAFKQIDEILEIIKDKRVYKFLHLPVQSGDDRVLKLMNRKYTVDEYRELVKEIR 275

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              P + I++D I+G PGE D+ F+ T++L+ +I + +     YS R  T  ++M  QV 
Sbjct: 276 DKIPIVNITTDIIIGHPGEDDEAFQNTINLIKEIKFERIHLAMYSIRPNTRSASMP-QVP 334

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
           +++K ER+    +   E   S +   +G    VL  + G++ G ++GR+     VV+   
Sbjct: 335 DSIKKERMKIANEVYEEVAYSVHSEYLGSNALVLTTELGRK-GSIIGRTINYIPVVIK-D 392

Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468
              +G+ I V+IT+     L G+ +
Sbjct: 393 YDKLGEWINVKITEASFFDLRGKFI 417


>gi|326567673|gb|EGE17779.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Moraxella
           catarrhalis BC1]
          Length = 349

 Score =  329 bits (843), Expect = 8e-88,   Method: Composition-based stats.
 Identities = 136/322 (42%), Positives = 199/322 (61%), Gaps = 7/322 (2%)

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           VVD  +   +KF+ L        R  G TAF++I EGC K+C+FCVVPYTRG E+SR L 
Sbjct: 29  VVDVSFPSIEKFDFLP-----EPRVEGYTAFVSIMEGCSKYCSFCVVPYTRGEELSRPLD 83

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
            V+ E   L + GV E+ LLGQNVN +RG+  DG  C FS+LL+ +S I G+ R+RYTTS
Sbjct: 84  DVLAEIDSLAEQGVREVNLLGQNVNGYRGEKDDGSICRFSELLHYVSYIDGIERIRYTTS 143

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
           HP + +D +I+A+  +D L+ +LHLP+QSGS+++L +M R HT   Y   I ++R +RPD
Sbjct: 144 HPLEFTDDIIEAYQSIDKLVSHLHLPIQSGSNQVLAAMKRNHTVDVYMNQIAKLRKIRPD 203

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           + +SSDFI+GFPGETD+DF  T+     + +  ++SF YS R GTP S++ + V    K 
Sbjct: 204 LHLSSDFIIGFPGETDEDFLQTLQFAKDLDFDHSYSFIYSKRPGTPASDLPDDVSLETKK 263

Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKH-GKEKGKLVGRSPWLQSVVLNSKNHNI 447
           +RL   Q+ ++       +A VGQ + VL E+   + +G L G +   +SV+  +    +
Sbjct: 264 QRLAVFQELIKRSTFEKTEAMVGQTLRVLAEEPANRRQGYLHGTADNTRSVIFKADTDLL 323

Query: 448 GDIIKVRITDVKISTLY-GELV 468
           G  + ++IT      L  GELV
Sbjct: 324 GKFVMIKITKAISMHLVEGELV 345


>gi|114771178|ref|ZP_01448598.1| RNA modification enzyme, MiaB-family protein [alpha proteobacterium
           HTCC2255]
 gi|114548103|gb|EAU50990.1| RNA modification enzyme, MiaB-family protein [alpha proteobacterium
           HTCC2255]
          Length = 460

 Score =  328 bits (842), Expect = 8e-88,   Method: Composition-based stats.
 Identities = 113/469 (24%), Positives = 205/469 (43%), Gaps = 34/469 (7%)

Query: 11  AHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC 70
             M      +   PQ   + S GC   + DS R+     ++GY       +AD +++NTC
Sbjct: 14  PKMQIDSTSRKGQPQ-IGMVSLGCPKALVDSERILTRLRAEGYAISPEYTNADAVIVNTC 72

Query: 71  HIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGP 130
              + A  +    +G   +          +  V+V GC+   E + I +  P V  V GP
Sbjct: 73  GFLDSAKLESLEAIGEALS---------ENGRVIVTGCLGVEE-DYIRKNHPSVLAVTGP 122

Query: 131 QTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190
             Y ++ + + +A              D F  L    G     R   ++L I EGC+  C
Sbjct: 123 HQYEQVLDAVHKA---------VPPSPDPFIDLLPASGVSLTPRHY-SYLKISEGCNHKC 172

Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW----RGKGLDGEKCT 246
            FC++P  RG  +SR    ++ EA KL+D+GV E+ ++ Q+ +A+    +       +  
Sbjct: 173 KFCIIPDMRGKLMSRPAHAIIREAEKLVDSGVKELLVISQDTSAYGLDIKHNTAHDHRAH 232

Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGD-LDVLMPYLHLPVQSGSDRILKS 305
            +DL   L  +   +RL Y   +P   +  LI    D  + ++PYL +P Q     +LK 
Sbjct: 233 ITDLTRDLGTLGAWIRLHYVYPYPHVRN--LIPLMADPSNNILPYLDIPFQHSHPDVLKR 290

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           M R   +      I   R   PDI + S FIVG+PGET+ +F   +D +D+    +   F
Sbjct: 291 MARPAKSSNTLSEIAAWRDNCPDITLRSTFIVGYPGETETEFEHLLDWLDEAQLDRVGCF 350

Query: 366 KYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK 425
           +Y    G   + +   ++ +VK +R     +K +    +     VG  ++V+++   ++ 
Sbjct: 351 QYENVDGARSNVLKNHIEPDVKQDRWERFMEKSQAISETKLAKKVGLNLDVIVDNIDEDG 410

Query: 426 ---GKLVGRSPWLQSVVL---NSKNHNIGDIIKVRITDVKISTLYGELV 468
               +    +P +   +    N+    +G II+V++ +     L+G+++
Sbjct: 411 VATCRTKADAPEIDGNLFIDENTDKIKVGQIIQVKVDEASEYDLWGQII 459


>gi|302522260|ref|ZP_07274602.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Streptomyces sp. SPB78]
 gi|302431155|gb|EFL02971.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Streptomyces sp. SPB78]
          Length = 499

 Score =  328 bits (842), Expect = 9e-88,   Method: Composition-based stats.
 Identities = 121/494 (24%), Positives = 200/494 (40%), Gaps = 58/494 (11%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +   + + GC  N  DS  +     + G++ V     AD+ V+NTC   E A +     L
Sbjct: 5   RTVALVTLGCARNEVDSEELAGRLEADGWDLVEDASHADVAVVNTCGFVEAAKKDSVDAL 64

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
               +LK      G    VV  GC+A+  G+++    P  + V+G   Y  + + L+   
Sbjct: 65  LEANDLKG----HGRTQAVVAVGCMAERYGKDLAEALPEADGVLGFDDYADISDRLQTIL 120

Query: 145 FG-----------------------------------KRVVDTDYSVEDKFERLSIVDGG 169
            G                                   +     D +  D  + L+   G 
Sbjct: 121 SGGIHASHTPRDRRKLLPLSPAARQDASGVALPGHAQQAPEPEDVAPADLPDGLAPASGP 180

Query: 170 YNRKRG-----VTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCE 224
               R        A + +  GCD+ C+FC +P  RG  ISR  S V+ E R L + GV E
Sbjct: 181 RAPLRRRLGASPVASVKLASGCDRRCSFCAIPSFRGSFISRRPSDVLTETRWLAEQGVRE 240

Query: 225 ITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL 284
           + L+ +N N   GK L G+      LL  L+ + G+ R+R +   P +M   LI      
Sbjct: 241 VMLVSEN-NTSYGKDL-GDIRLLETLLPELAAVDGIERVRVSYLQPAEMRPGLIDVLTST 298

Query: 285 DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETD 344
             + PY  L  Q  +  +L++M R      +  ++D+IR+  P+  + S+FIVGFPGET+
Sbjct: 299 PKIAPYFDLSFQHSAAGVLRAMRRFGGTDSFLGLLDQIRAKAPEAGVRSNFIVGFPGETE 358

Query: 345 DDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVS 404
           +D       +          F YS   GT  +    ++DE V AERL  + +   E    
Sbjct: 359 EDVAELERFLTSARLDAIGVFGYSDEEGTEAATYATKLDEEVVAERLARVSRLAEELTAQ 418

Query: 405 FNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVVL--------NSKNHNIGDIIK 452
             +  +G+ +EVL+E    E    +GR    +P     ++           +  +G ++ 
Sbjct: 419 RAEERIGETMEVLVESAATEDEPALGRGPHQAPETDGQIILTGGAALPGGASPRVGRMVV 478

Query: 453 VRITDVKISTLYGE 466
            ++   +   L  E
Sbjct: 479 AKVIGTEGVDLVAE 492


>gi|190893801|ref|YP_001980343.1| methylase (RNA modification enzyme), MiaB family [Rhizobium etli
           CIAT 652]
 gi|190699080|gb|ACE93165.1| putative methylase protein (RNA modification enzyme), MiaB family
           [Rhizobium etli CIAT 652]
          Length = 423

 Score =  328 bits (842), Expect = 9e-88,   Method: Composition-based stats.
 Identities = 121/436 (27%), Positives = 190/436 (43%), Gaps = 28/436 (6%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V ++GC++N Y+S  M+      G          + +V+NTC +  +A  +    +    
Sbjct: 6   VITFGCRLNTYESEVMKAQAEKAGLN--------NAVVVNTCAVTGEAVRQARQAI---- 53

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
                  ++     ++V GC AQ E ++     P V+ V+G +             FG  
Sbjct: 54  ---RRARRDNPHARIIVTGCAAQTE-KQTFAAMPEVDAVLGNEEKLSSASYRSLPDFGVS 109

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRG-VTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
             +    V D     +          G V AF+ +Q GCD  CTFC++PY RG   S  +
Sbjct: 110 AQEK-LRVNDIMSVKATAPQMVRHIDGHVRAFIQVQNGCDHRCTFCIIPYGRGNSRSVPM 168

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
             VVD+AR+L D+G  EI L G +  +  G  L G           L +I  + RLR ++
Sbjct: 169 GAVVDQARRLADSGYREIVLTGVDATS-YGGDLPGAPTLGVLAKTLLKQIPDIRRLRLSS 227

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
               +    L+    D    MP+LHL +Q G D ILK M RRH   +  + I   R +RP
Sbjct: 228 IDSIEADAHLMDLIADEPRFMPHLHLSLQHGDDMILKRMKRRHLRADALRFIAEARRLRP 287

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
           +++  +D I GFP ET++ F   + L ++ G A    F YS R GTP + M  Q+D ++ 
Sbjct: 288 EMSFGADMIAGFPTETEEMFDNAVRLAEEAGIAHLHVFPYSARPGTPAARMP-QLDRSLV 346

Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNI 447
            +R   L+        S  D  VG    +L+E +G      +  +     V   +     
Sbjct: 347 KDRAARLRATGHRLHQSHLDGMVGTRQWLLVENNG------LAHTENFTLV--AAAGLRP 398

Query: 448 GDIIKVRITDVKISTL 463
           G+++ V IT      L
Sbjct: 399 GELVPVTITGHNGKHL 414


>gi|295836194|ref|ZP_06823127.1| 2-methylthioadenine synthetase [Streptomyces sp. SPB74]
 gi|197695299|gb|EDY42232.1| 2-methylthioadenine synthetase [Streptomyces sp. SPB74]
          Length = 499

 Score =  328 bits (842), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 120/494 (24%), Positives = 196/494 (39%), Gaps = 58/494 (11%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +   + + GC  N  DS  +     + G++ V     AD+ V+NTC   E A +     L
Sbjct: 5   RTVALVTLGCARNEVDSEELAGRLEADGWDLVEDAAHADVAVVNTCGFVEAAKKDSVDAL 64

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
               +LK      G    VV  GC+A+  G+++    P  + V+G   Y  + + L+   
Sbjct: 65  LEANDLKG----HGRTQAVVAVGCMAERYGKDLAEALPEADGVLGFDDYTNISDRLQTIL 120

Query: 145 FG-----------------------------------KRVVDTDYSVEDKFERLSIVDGG 169
            G                                   +     D +  D  + L+   G 
Sbjct: 121 SGGIHASHTPRDRRKLLPLSPAARQDAPGVALPGHAQQAPEPEDAAPADLPDGLAPASGP 180

Query: 170 YNRKRG-----VTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCE 224
               R        A + +  GCD+ C+FC +P  RG  ISR  S V+ E R L   GV E
Sbjct: 181 RAPLRRRLGTSPVASVKLASGCDRRCSFCAIPSFRGSFISRRPSDVLAETRWLAGQGVRE 240

Query: 225 ITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL 284
           + L+ +N N   GK L G+      LL  L+ + G+ R+R +   P +    LI      
Sbjct: 241 VMLVSEN-NTSYGKDL-GDIRLLETLLPELAAVDGIERVRVSYLQPAETRPGLIDVLTST 298

Query: 285 DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETD 344
             + PY  L  Q  +  +L++M R      +  ++D+IR+  P   + S+FIVGFPGET+
Sbjct: 299 PKIAPYFDLSFQHSAPGVLRAMRRFGGTDSFLGLLDQIRAKAPQAGVRSNFIVGFPGETE 358

Query: 345 DDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVS 404
           +D       +          F YS   GT  +    ++ E V AERL  + +   E    
Sbjct: 359 EDVAELERFLTSARLDAIGVFGYSDEEGTEAATYATKLPEEVVAERLARVARLAEELTAQ 418

Query: 405 FNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQS-VVLNSKNHN-------IGDIIK 452
             +  +G+ +EVL+E    E    +GR    +P     ++L             +G ++ 
Sbjct: 419 RAEERIGETMEVLVESAATEDEPALGRGPHQAPETDGQIILTGGAALPGGASPRVGRMVV 478

Query: 453 VRITDVKISTLYGE 466
            ++   +   L  E
Sbjct: 479 AKVIGTEGVDLVAE 492


>gi|294673381|ref|YP_003573997.1| MiaB family RNA modification enzyme [Prevotella ruminicola 23]
 gi|294472539|gb|ADE81928.1| RNA modification enzyme, MiaB family [Prevotella ruminicola 23]
          Length = 462

 Score =  328 bits (842), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 123/452 (27%), Positives = 211/452 (46%), Gaps = 19/452 (4%)

Query: 9   GVAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLN 68
               ++  I       ++    + GC++N  ++     M    G       + AD+ ++N
Sbjct: 15  NNTPILYMIDTSAFQGKKAAYFTLGCKLNFSETSTFGKMLQDLGVSTAQKGEQADICLIN 74

Query: 69  TCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVV 128
           TC + E A +K    + R+       ++E     VVV GC AQ E +E+  +   V++V+
Sbjct: 75  TCSVTEVADKKCRQAIHRL-------VRENPGAFVVVTGCYAQLEADEVA-KIEGVSLVL 126

Query: 129 GPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
           G      L + L  A  G     T     +K + +       ++      FL +Q+GCD 
Sbjct: 127 GSNEKANLVQFLSDAWTG---APTAKYYREKTKDIKSFAPSCSKGNRTRYFLKVQDGCDY 183

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS 248
           FCT+C +PY RG   + +++ +V +A++    G  EI L G N+    G         F 
Sbjct: 184 FCTYCTIPYARGFSRNPTIASLVAQAQEAAAEGGKEIVLTGVNI----GDFGKTTGEKFI 239

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
           DL+ +L  ++G+ R R ++  P  +SD LI+        MP+ H+P+QSGS+ +LK M+R
Sbjct: 240 DLVKALDGVEGIQRYRISSLEPDLISDELIEYCAKSRAFMPHFHIPLQSGSNTVLKLMHR 299

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
            +    + + I RI+ + PD  I  D +VG  GET + F  T   +D +   Q   F YS
Sbjct: 300 HYDRELFAEKIHRIKELMPDAFIGVDVMVGCRGETPECFEETYTFLDSLDVTQLHVFPYS 359

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL 428
            R GT   ++   V E  K +R+  L +   ++  +F +  +GQ  EVL EK  + +  +
Sbjct: 360 ERPGTSALSIPYVVPEKEKKQRVKRLLELSDQKTHAFYERYIGQQAEVLFEKATRGRA-M 418

Query: 429 VGRSPWLQSVVLNSKNHNI---GDIIKVRITD 457
            G +     V L +K+ N      +I V++ +
Sbjct: 419 HGFTKNYIRVELPAKDANPDFDNQLISVKLGE 450


>gi|257056506|ref|YP_003134338.1| MiaB-like tRNA modifying enzyme YliG [Saccharomonospora viridis DSM
           43017]
 gi|256586378|gb|ACU97511.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Saccharomonospora
           viridis DSM 43017]
          Length = 480

 Score =  328 bits (842), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 120/474 (25%), Positives = 204/474 (43%), Gaps = 40/474 (8%)

Query: 19  DQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAE 78
            +    +R  + + GC  N  DS  +     + G++  +  + +D+IV+NTC   E+A +
Sbjct: 4   TESSHNRRVSLLTLGCARNEVDSEELAGRLAAGGWQLSDDPESSDVIVVNTCGFVEQAKK 63

Query: 79  KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPE 138
                L    +             VV  GC+A+  G+E+    P  + V+G   Y  L E
Sbjct: 64  DSVDTLLAAAD---------TGAKVVAVGCMAERYGKELAENLPEADAVLGFDHYPHLAE 114

Query: 139 LLERARFGKRVVDTDYSVEDKFERLSIVD----------------GGYNR------KRGV 176
            L     G+ V    ++  D+   L I                  G   R          
Sbjct: 115 RLVDIAEGRPV--ESHTPTDRRTLLPITPVDRQAATDEVTVPGHAGWGPRVLRSRLDDSP 172

Query: 177 TAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR 236
            A L I  GCD+ C+FC +P  RG  +SR   ++V EA  L   GV E+ L+ +N  +  
Sbjct: 173 VAPLKIASGCDRRCSFCAIPSFRGSFVSRHPDELVAEAEWLATQGVRELFLVSENSTS-Y 231

Query: 237 GKGLD---GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHL 293
           GK LD   G       LL  L+ + G+ R+R +   P +    L++       +  Y  L
Sbjct: 232 GKDLDRSLGGTRALERLLPRLAAVDGIDRVRVSYLQPAETRPDLVRVIATTPGVADYFDL 291

Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
             Q  S+ +L+ M R  +   + ++I++IRS  PD  I ++ IVGFPGET++D       
Sbjct: 292 SFQHASESVLRRMRRFGSTESFLKLIEQIRSYAPDAGIRTNVIVGFPGETEEDVAELERF 351

Query: 354 VDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQI 413
           + +        F YS   GT       ++DE+V  ER+  +   + E      +  +G +
Sbjct: 352 LTEARLDAVGVFGYSDEDGTEAETFDGKLDEDVITERVGRIAALVEELSAQRAEGRIGSV 411

Query: 414 IEVLIEKHGKEK-GKLVGRSPWLQS--VVLNSKNHNIGDIIKVRITDVKISTLY 464
           ++VL+E   +E  G+   ++P +    VVL   +  +G++++  + D     L 
Sbjct: 412 VDVLVESVDEEIVGRAAHQAPEVDGECVVLGDLDCKVGELLRCEVVDSAGVDLV 465


>gi|118431496|ref|NP_148004.2| MiaB-like protein [Aeropyrum pernix K1]
 gi|116062821|dbj|BAA80529.2| MiaB homolog [Aeropyrum pernix K1]
          Length = 450

 Score =  328 bits (842), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 132/459 (28%), Positives = 223/459 (48%), Gaps = 24/459 (5%)

Query: 11  AHMVSQIVDQCIVP-QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNT 69
           A +  Q   +   P + ++++ YGC ++ +D+L M       GY RV   +DAD+I++NT
Sbjct: 3   AEIPGQAGRRAGKPSRTYYLEVYGCSLSEFDALIMASRLEEAGYRRVARPEDADVILVNT 62

Query: 70  CHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG 129
           C +R    +++   L ++R        +  D   VVAGC+ +A    + R  P  +++  
Sbjct: 63  CAVRLDTEQRIAERLEKLRL-------QLPDRKYVVAGCLVKARPGLVARLVPEASLLA- 114

Query: 130 PQTYYRLPELLERARFGKRVVDTDYSVEDK-FERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
           PQ   R+ + ++    G+R+V  D   + +   +L I D            + IQEGC  
Sbjct: 115 PQAVERVLDAVDALESGRRLVVLDGRRDTRSMPQLPITDA--------VVTVMIQEGCLG 166

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS 248
            C+FC+    R    S S   +V+  R+ ++ G  EI L G +V A  G  L G+     
Sbjct: 167 DCSFCITKVARRQVRSYSPRVIVERVREAVEKGAREIRLTGTDV-AVYGVDLPGKPNLAD 225

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCL---IKAHGDLDVLMPYLHLPVQSGSDRILKS 305
            +   L +++G  R+R     P  +   L   +  + D + +  Y HLPVQSG D +LK 
Sbjct: 226 LVAAILEKVEGDYRIRVGMMTPDQVEPYLDSLLDVYRD-ERVYKYFHLPVQSGDDEVLKI 284

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           M R +T  EY+ I  RI+S  PD  I++D IVG PGET + F  T+ LV+++ + +    
Sbjct: 285 MKRNYTVSEYKAIHRRIKSRFPDAMIATDIIVGHPGETWEAFWNTVRLVEELRFEKVHLA 344

Query: 366 KYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK 425
           +YS R  T  ++M EQV ++VK ER   L K + E  +  N + VG+ +  L+ +    +
Sbjct: 345 QYSLRPHTEAASM-EQVPDSVKKERSRILGKIVAEIGLEINGSYVGRRVRALVTERSWRE 403

Query: 426 GKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLY 464
           G + GR      ++L  +   +G  +   + +     L 
Sbjct: 404 GSMTGRLDNYTPIILPYEERAMGRWVYAEVEEATFFDLR 442


>gi|257791372|ref|YP_003181978.1| MiaB-like tRNA modifying enzyme YliG [Eggerthella lenta DSM 2243]
 gi|257475269|gb|ACV55589.1| MiaB-like tRNA modifying enzyme YliG [Eggerthella lenta DSM 2243]
          Length = 455

 Score =  328 bits (841), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 117/463 (25%), Positives = 193/463 (41%), Gaps = 18/463 (3%)

Query: 14  VSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIR 73
           + +  D  +V       + GC  N  D+ RM       G+   +   +AD +V+NTC   
Sbjct: 1   MERSSDAALVAPCVAFVTLGCAKNEADTARMRVRLAEAGFLIEDDPAEADAVVVNTCSFI 60

Query: 74  EKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTY 133
           + A E+    +     + N          ++VAGC+    GE++          V     
Sbjct: 61  QSATEESIEAVFDAAGMPNVAA----GAPLIVAGCMPARYGEDLADELVEARAFVPCSRE 116

Query: 134 YRLPELLERARF------GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCD 187
             +  ++  A        G     T  +     E                A++ I +GCD
Sbjct: 117 DDIAAIVADALGVDAPGGGAAASVTLSASGGAAEVEGSRAALAALPAAPFAYVKISDGCD 176

Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTF 247
           +FCT+C +PY RG   S  L  V  +    +  G  EI L+ Q+   W G   D E  + 
Sbjct: 177 RFCTYCTIPYIRGRYRSFPLDDVRADVAAQVAAGAREIVLIAQDTGRW-GADFD-EPSSL 234

Query: 248 SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307
           + L+ +L+E       R     P  +SD L+ A    D +  Y  +P+Q     IL++MN
Sbjct: 235 AALVAALAEEFPQTWFRIMYIQPEGLSDELLDAVAAHDNVCDYFDIPLQHVDAGILRAMN 294

Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           R  +  E+  ++DR+ +  P   + +  I GFPGET++ F      V++  +     F Y
Sbjct: 295 RTGSREEFLALVDRVLAHVPGATLRTTLIAGFPGETEEQFEDLCSFVEEGLFDYVGVFPY 354

Query: 368 SPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK 427
           S   GT   ++  Q+DE+ K +R   L+            A VG+ ++VL+E   +E G+
Sbjct: 355 SREEGTRAFDLPGQLDEDEKNDRAQRLRDLADAVCCPRIAARVGREMDVLVEGV-EEDGQ 413

Query: 428 LVGR----SPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGE 466
           L GR    +P +  V         G+I +VRI D  +  + GE
Sbjct: 414 LFGRAMCQAPEVDGVTYLDAGE-PGEIRRVRIVDALLYEMEGE 455


>gi|150020569|ref|YP_001305923.1| MiaB-like tRNA modifying enzyme [Thermosipho melanesiensis BI429]
 gi|149793090|gb|ABR30538.1| MiaB-like tRNA modifying enzyme [Thermosipho melanesiensis BI429]
          Length = 429

 Score =  328 bits (841), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 125/436 (28%), Positives = 224/436 (51%), Gaps = 24/436 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R  + +YGC++N Y+S  M +   ++GY  VN   ++D+ V+N+C +  +A  KV   + 
Sbjct: 2   RVSIITYGCKLNQYESELMTERLENEGYVVVNGEVESDIYVINSCVVTNEATRKVKQQIR 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R++       K   D  +VV GC +Q    E+L     V++++G +   R+  ++E    
Sbjct: 62  RLK-------KRFPDSKIVVTGCYSQLFARELLE--EEVDLILGNKEKKRIESIIENVGV 112

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG-IEIS 204
               VD  Y   D  +   +      R R   AF+ +Q+GC   C++C + Y RG    S
Sbjct: 113 ---FVDRTYWNSDDLDEEYVFSSLSERTR---AFIKVQDGCTNVCSYCTIRYARGMRIRS 166

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           + +  VV E  ++++    EI + G N+    GK    ++ +  +LL ++ +IKG  R+R
Sbjct: 167 KPIELVVSEILRMVNKDYKEIVITGLNLG-KYGKD---KETSLLNLLKNVVKIKGDFRIR 222

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
            ++ +P D++D LIK   + + +  +LH+P+QSGS +IL+ M R +T  ++  +  ++R 
Sbjct: 223 LSSINPEDINDELIKFIVNEEKVCNHLHVPLQSGSTKILEKMRRNYTQSDFLNLAYKLRK 282

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
              + +I++D +VGFPGET +DF  T+ +V ++ +++  +F+YS R  T    M  +V  
Sbjct: 283 EDINFSITTDIMVGFPGETQEDFEETLKVVKEVMFSKVHTFRYSDRPNTLAYKMENKVPG 342

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
           NVK ER + L K  +E    +    VG+  +V+IE    +     G   +   V+  +  
Sbjct: 343 NVKKERAIELDKFSKEVAKEYRKRLVGKSTKVIIE--SCKNKIYKGYDEYY--VLHETSR 398

Query: 445 HNIGDIIKVRITDVKI 460
            N G+   V I  V  
Sbjct: 399 GNFGNFAYVNIMAVTD 414


>gi|295103489|emb|CBL01033.1| MiaB-like tRNA modifying enzyme [Faecalibacterium prausnitzii
           SL3/3]
          Length = 431

 Score =  328 bits (841), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 115/448 (25%), Positives = 211/448 (47%), Gaps = 28/448 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R    + GC++N+ ++  +E +F + G+      + AD+ ++N+C +     +K   +L 
Sbjct: 2   RVCFYTLGCKVNLNETGALEQLFRANGFTIAQEGEAADVFIVNSCTVTNFGDQKSRKWLR 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R +       +E    + V+ GC  QA  EE  +     ++V G   +  + E +++   
Sbjct: 62  RKK-------RENPGAVTVLTGCYPQAFPEEAAQFM-EADLVCGNGDHKAILENVQKLLD 113

Query: 146 GKRVVDTDYSVE--DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           G   +      +  ++FE L +       +    AF+ +++GC++ C +CV+P  RG   
Sbjct: 114 GHERIVAIAPHQRGEQFEELPV----ERFETHTRAFIKVEDGCNRQCAYCVIPRARGPVR 169

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR+   ++ E  +L   G  E+ L   ++ ++   GLD       +L+   +++ G+ R+
Sbjct: 170 SRAEESILAELHQLAAAGYREVVLSAISLPSY---GLDTG-TNLVELVEKCAQVPGIERI 225

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R  +  P  ++   I     +D L P  HL +QSG    L+ M R +TA EY Q++++IR
Sbjct: 226 RLGSLDPDMLTPEFISRLAAVDKLCPQFHLSLQSGCTATLRRMRRVYTAQEYAQVVEQIR 285

Query: 324 SV---RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           +    RP ++ ++D I GFPGET +DF  +   + KIG+ +   F YS R GTP  +  +
Sbjct: 286 AAYGSRP-VSFTTDCICGFPGETAEDFEESCAFLKKIGFLKVHVFPYSRRSGTPAYDFPD 344

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440
           Q+ E  K ER   +     + +     A  G   EVL+E          G +     VV+
Sbjct: 345 QIHEREKQERSRRMNAAAEQVRCEALAAFEGTEDEVLLETPL-SGTLFTGYTRLYIPVVV 403

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
           ++     G I++V++         GE V
Sbjct: 404 SAPGCESGQIVRVKL---GRYD--GERV 426


>gi|149201229|ref|ZP_01878204.1| RNA modification enzyme, MiaB-family protein [Roseovarius sp.
           TM1035]
 gi|149145562|gb|EDM33588.1| RNA modification enzyme, MiaB-family protein [Roseovarius sp.
           TM1035]
          Length = 480

 Score =  328 bits (841), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 119/452 (26%), Positives = 198/452 (43%), Gaps = 33/452 (7%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
              + S GC   + DS R+     ++GY        AD +++NTC   + A  +    +G
Sbjct: 50  TIGMVSLGCPKALVDSERILTRLRAEGYGISPDYTGADAVIVNTCGFLDSAKAESLEAIG 109

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                         +  V+V GC+  AE E I    P V  V GP  Y ++ + +  A  
Sbjct: 110 EALA---------ENGRVIVTGCLG-AEPEYITGVHPRVLAVTGPHQYEQVLDAVHLA-- 157

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                       D F  L    G     R   ++L I EGC+  C FC++P  RG   SR
Sbjct: 158 -------VPPSPDPFIDLLPASGVSLTPRHY-SYLKISEGCNHKCKFCIIPDMRGKLQSR 209

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAW----RGKGLDGEKCTFSDLLYSLSEIKGLV 261
               V+ EA KL+++GV E+ ++ Q+ +A+    R     G +   +DL   L  +   V
Sbjct: 210 PAHAVIREAAKLVESGVKELLVISQDTSAYGVDIRHAEERGHRAHITDLARDLGGLGAWV 269

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           RL Y   +P       + A G   +++PYL +P Q     +L+ M R   A +    I  
Sbjct: 270 RLHYVYPYPHVRDLIPLMAEG---LVLPYLDIPFQHAHPEVLRRMARPAAAAKTLDEIAA 326

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
            R   P+IA+ S FIVG+PGET+ +F+  +D +D+    +   F+Y    G   + + + 
Sbjct: 327 WRRDCPEIALRSTFIVGYPGETEAEFQTLLDWLDEAQLDRVGCFQYENVAGARSNALPDH 386

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK---GKLVGRSPWLQSV 438
           V   VK ER     +K +    +   A VGQ +EV++++   +     +    +P +   
Sbjct: 387 VAAEVKQERWDRFMEKAQAISEAKLAAKVGQRMEVIVDEIDADGIATCRTKADAPEIDGN 446

Query: 439 VLNS---KNHNIGDIIKVRITDVKISTLYGEL 467
           +      +  ++GDI+ V + +     L+G L
Sbjct: 447 LFIDEGTEEVSVGDIVSVVVDEAGEYDLWGRL 478


>gi|160933141|ref|ZP_02080530.1| hypothetical protein CLOLEP_01984 [Clostridium leptum DSM 753]
 gi|156868215|gb|EDO61587.1| hypothetical protein CLOLEP_01984 [Clostridium leptum DSM 753]
          Length = 424

 Score =  328 bits (841), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 119/433 (27%), Positives = 199/433 (45%), Gaps = 18/433 (4%)

Query: 44  MEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLV 103
           M      +G++ V+ +   D  ++NTC   E A ++    +  +  LK      G    +
Sbjct: 2   MMASLEREGFQLVDDVAMGDAAIVNTCGFIESAKQESIEEILELAKLKEE----GRIKAI 57

Query: 104 VVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERL 163
           VV GC+A+   +EI +  P VN VVG      +  ++  A  GKR+       E     L
Sbjct: 58  VVTGCLAERYQQEIAKELPEVNAVVGIGANKEIARIVREALEGKRIETFPPKCE-----L 112

Query: 164 SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVC 223
            +            ++L I EGCD  CT+C +P  RG   SR +  ++ EA KL   GV 
Sbjct: 113 PLEGERVQSTPSYFSYLKIAEGCDNHCTYCAIPLIRGGYRSRKMEDILAEAEKLAQWGVK 172

Query: 224 EITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGD 283
           E+ ++ Q+     G+ L GE      LL  L +++GL  +R    +P  ++D L++    
Sbjct: 173 ELMVIAQDTT-RYGEDLYGEGK-LPQLLTELCKVEGLRWIRVLYCYPERITDELLEVMAK 230

Query: 284 LDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGET 343
            D ++ Y+ LP+Q  S ++L++MNR+        +I +IR   P I + + F+VGFPGET
Sbjct: 231 EDKILKYMDLPLQHCSRQVLRAMNRQGDRESLSALIRKIREKVPGIVLRTTFMVGFPGET 290

Query: 344 DDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQV 403
           ++ F    +   ++ + +   F YS   GTP + + +Q+   +K  R   + ++      
Sbjct: 291 EEAFEELAEFAKEMRFERMGCFAYSQEEGTPAARLPDQISREIKEHRQELMMEQQMALMD 350

Query: 404 SFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVL---NSKNHNIGDIIKVRIT 456
             +   VG+ I VL E   +      GRS    P + + V      K    G  ++V IT
Sbjct: 351 EMSREMVGKTITVLNEGWDRYAECCFGRSAADAPEIDTKVFFTVEGKKPYPGMFVQVEIT 410

Query: 457 DVKISTLYGELVV 469
           D     L G++V 
Sbjct: 411 DTMDCDLIGQVVT 423


>gi|325474677|gb|EGC77863.1| MiaB-like tRNA modifying enzyme YliG [Treponema denticola F0402]
          Length = 474

 Score =  328 bits (841), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 118/478 (24%), Positives = 210/478 (43%), Gaps = 41/478 (8%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           ++ ++FF+  +GC  N  D+  +  +  +  ++  +  D+ADLI++N+C     A E+  
Sbjct: 1   MLQKKFFMDLHGCAKNQVDAELIIGIMENLSWKNTSDPDEADLIIVNSCGFINSAKEESI 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           + + + +              +++AGC+A+   + +    P  + + G      LP+L++
Sbjct: 61  NAVLQAKAAH-------PRTKILLAGCLAERYADILKNDLPEADGIFGNGNLSLLPQLID 113

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNR--KRGVTAFLTIQEGCDKFCTFCVVPYTR 199
                K   +          ++ I  G   +      + ++ I EGCD FC+FC +P  R
Sbjct: 114 SMFPKKTSEEKFIDKILIPPQIGICGGERPKILNFPRSTYIKITEGCDNFCSFCAIPIIR 173

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK--------CTFSDLL 251
           G   SR +  + DE +  +  G  E  L+GQ++ A++    D  +           + LL
Sbjct: 174 GRLRSRPIKDICDEIKTFLKKGFYEFNLIGQDLAAYQTGKNDLNENELYRENCSGLALLL 233

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
            S+SEIKG  ++R    HP      ++         +PY  +P QSG+ +I+++MNR   
Sbjct: 234 KSISEIKGNFKIRLLYIHPDHFPLDILPIMTADKRFLPYFDIPFQSGAQKIIRAMNRNGA 293

Query: 312 AYEYRQIIDRIRSVRP-------DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
           A  Y  II  IR           +  I + F+VGFPGETD+DF  T+  + ++    +  
Sbjct: 294 AEVYLDIIKNIREAFEKAKSPYGEPQIRTTFLVGFPGETDEDFNETIKFLKELRPLWSGG 353

Query: 365 FKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK--HG 422
           F YS    TP  +   +V +     RL  +Q           D+ +G+ IEVL+E+    
Sbjct: 354 FTYSREEDTPSYSFKGKVPKKTAEARLAEIQNTQTSITEKKLDSFIGKEIEVLVEELIQA 413

Query: 423 KEKGKL-VGR----SPWLQSVVL----------NSKNHNIGDIIKVRITDVKISTLYG 465
           ++K  L +GR    +P +   V+          +      G I+K RI       L  
Sbjct: 414 EDKAFLALGRAWFQAPEVDGAVVLNFNLNKKDIDGNPIAPGSIVKARIAARNGFDLEA 471


>gi|89900760|ref|YP_523231.1| ribosomal protein S12 methylthiotransferase [Rhodoferax
           ferrireducens T118]
 gi|122996924|sp|Q21X03|RIMO_RHOFD RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|89345497|gb|ABD69700.1| conserved hypothetical protein [Rhodoferax ferrireducens T118]
          Length = 464

 Score =  328 bits (841), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 116/481 (24%), Positives = 201/481 (41%), Gaps = 45/481 (9%)

Query: 14  VSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIR 73
           +S+++ +     +    S GC   + DS  +     ++GY+   +   ADL+++NTC   
Sbjct: 1   MSEVITKSNTAPKVGFVSLGCAKALTDSELILTQLSAEGYQTSKTFQGADLVIVNTCGFI 60

Query: 74  EKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCV----AQAEGEEILRRSPIVNVVVG 129
           + A ++    +G                 V+V GC+    A+  G  + +  P V  V G
Sbjct: 61  DDAVKESLDTIGEALAENGK---------VIVTGCLGAKTAEGGGNLVRQMHPSVLAVTG 111

Query: 130 PQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKF 189
           PQ    + + +            D          +    G        A++ I EGC+  
Sbjct: 112 PQATQEVMDAVHANLPKPHDPFIDLVPN------AFGVAGIKLTPRHYAYIKISEGCNHR 165

Query: 190 CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE 243
           CTFC++P  RG  +SR +  V+ EAR L + GV E+ ++ Q+ +A+      R    DG+
Sbjct: 166 CTFCIIPSMRGDLVSRPIGDVLKEARALFEGGVKELLVISQDTSAYGVDVKYRTGFWDGK 225

Query: 244 --KCTFSDLLYSLSEI----KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQS 297
             K    +L  +L ++       VRL Y   +P       + A G    ++PYL +P+Q 
Sbjct: 226 PTKTRLLELAAALGDMAEPYGAWVRLHYVYPYPSVDDLLPLMAAG---KVLPYLDVPLQH 282

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
               +LK M R  +  +  + I R R V PDI + S FI GFPGET+++F   +D + + 
Sbjct: 283 SHPEVLKRMKRPASGEKNLERIQRWREVCPDIVVRSTFIAGFPGETEEEFSHLLDFMREA 342

Query: 358 GYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVL 417
              +A  F YSP  G   +++   +   ++ ER             +     +G  ++VL
Sbjct: 343 QIDRAGCFAYSPVQGAVANDIGGMLPIELREERRARFMAVAEAVSSAKLQQRIGATMQVL 402

Query: 418 IEK-----HGKEKGKLVGRSPWLQSVV------LNSKNHNIGDIIKVRITDVKISTLYGE 466
           ++           G+    +P +  VV        SK   +G+  K RI   +   L  +
Sbjct: 403 VDSAPGLGKKGGLGRSYADAPEIDGVVKLLPPEKISKTLRVGEFTKARIVGAQGHDLVAQ 462

Query: 467 L 467
            
Sbjct: 463 P 463


>gi|150002616|ref|YP_001297360.1| putative Fe-S oxidoreductase [Bacteroides vulgatus ATCC 8482]
 gi|254881421|ref|ZP_05254131.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|294777900|ref|ZP_06743343.1| MiaB-like protein [Bacteroides vulgatus PC510]
 gi|319642808|ref|ZP_07997446.1| Fe-S oxidoreductase [Bacteroides sp. 3_1_40A]
 gi|149931040|gb|ABR37738.1| putative Fe-S oxidoreductase [Bacteroides vulgatus ATCC 8482]
 gi|254834214|gb|EET14523.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|294448253|gb|EFG16810.1| MiaB-like protein [Bacteroides vulgatus PC510]
 gi|317385552|gb|EFV66493.1| Fe-S oxidoreductase [Bacteroides sp. 3_1_40A]
          Length = 438

 Score =  328 bits (840), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 114/439 (25%), Positives = 198/439 (45%), Gaps = 18/439 (4%)

Query: 17  IVDQCIVPQRFFVK-SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREK 75
           ++D  I   +  V  + GC++N  ++  +       G       + AD+ V+NTC + E 
Sbjct: 1   MIDTTIFQDKTAVYYTLGCKLNFSETSTIGKTLKEAGIRTARKGEKADICVINTCSVTEV 60

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135
           A +K    + R+       +K+     VVV GC AQ + +++      V+VV+G +    
Sbjct: 61  ADKKCRQAIHRL-------VKQHPGAYVVVTGCYAQLKPDQVAN-IEGVDVVLGAEQKGE 112

Query: 136 LPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
           L   L       +      + +D            +R      FL +Q+GCD FC++C +
Sbjct: 113 LMNYLGNLEKHPQGEAITTAAKDIRSFSP----SCSRGDRTRYFLKVQDGCDYFCSYCTI 168

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
           P+ RG   +  + ++V++AR+    G  EI + G N+    G        +F DL+ +L 
Sbjct: 169 PFARGRSRNGRIEEIVEQARQAAAEGGKEIVITGVNI----GDFGKTTGESFFDLVKALD 224

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
           ++ G+ R R ++  P  ++D +I+        MP+ H+P+QSGSD +LK M RR+    +
Sbjct: 225 QVAGIERYRISSIEPNLLTDEIIEYVSRSRAFMPHFHIPLQSGSDDVLKLMRRRYDTALF 284

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
              I +I+ + PD  I  D IVG  GET++ F      ++ +   Q   F YS R GT  
Sbjct: 285 ASKIRKIKEIMPDAFIGVDVIVGTRGETEEYFEDAYRFIEGLDVTQLHVFSYSERPGTQA 344

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWL 435
             +   V    K  R   L      +  +F  + +G+   VL+EK  K    + G +   
Sbjct: 345 LKIEYVVSPEEKHRRSQRLLALSDAKTKAFYTSHIGREAWVLMEK-SKAGTPMHGFTDNY 403

Query: 436 QSVVLNSKNHNIGDIIKVR 454
             V ++  +     +I+VR
Sbjct: 404 IRVEMDHDDQLDNQLIRVR 422


>gi|296125881|ref|YP_003633133.1| RNA modification enzyme, MiaB family [Brachyspira murdochii DSM
           12563]
 gi|296017697|gb|ADG70934.1| RNA modification enzyme, MiaB family [Brachyspira murdochii DSM
           12563]
          Length = 435

 Score =  328 bits (840), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 144/450 (32%), Positives = 244/450 (54%), Gaps = 22/450 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + F++++YGCQMN  DS  + +    +G+ +  + ++AD I++NTC +R  A E+V+S  
Sbjct: 2   KNFYLENYGCQMNKADSNSLINSLMQEGFIQTENYENADNIIINTCSVRAHAEERVFS-- 59

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R++    +R K   D  +++ GC+AQ   E++      VN +        + + L+   
Sbjct: 60  -RVKLFNANRKKNKKDTKIIIMGCMAQTSKEKLESL--GVNKIFDVYNEVNIIDYLKDEE 116

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
              R  + +Y     +          +  +   AF+ I  GC+ +CT+C+VP+TRG  +S
Sbjct: 117 VFVRKFNDNYIFNKSY---------VDEDKPHKAFIPISHGCNNWCTYCIVPHTRGKMVS 167

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI-----KG 259
           R   ++++E ++LID+G  EITLLGQNVN+  G  +D E   F++LLY + ++     K 
Sbjct: 168 RKSYEIIEELKRLIDDGAKEITLLGQNVNS-YGLDIDNE-INFTELLYKIDKVIDEKSKN 225

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
            V +R+ TSHP+D    L  A  +L+ L  ++HLP QSGSDRILK MNR++T  EY   +
Sbjct: 226 KVWIRFLTSHPKDFDKDLADAIWNLNSLCKHIHLPFQSGSDRILKLMNRKYTKEEYLTKV 285

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
             +R    D  IS+D IVG+  ET+D++  T++L++ IG+ +A+ +KYS R G+      
Sbjct: 286 SYLRDYAKDFPISTDVIVGYADETEDEYNETLELLESIGFEEAYLYKYSEREGSIAYKKR 345

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV 439
            + D+   A RL  L    RE         VG+   V+I+   K+    + RS   + ++
Sbjct: 346 VEYDKASGARRLTKLVNYQRELAQKLLANQVGKKTSVMIDDTAKDNMHYLCRSKENRIIL 405

Query: 440 LNSKNHN-IGDIIKVRITDVKISTLYGELV 468
           +  +    +GDI    + ++K  TL G+ +
Sbjct: 406 IKKEKELNMGDIFNAEVAEIKSHTLIGKFI 435


>gi|282860156|ref|ZP_06269231.1| MiaB-like protein [Prevotella bivia JCVIHMP010]
 gi|282587045|gb|EFB92275.1| MiaB-like protein [Prevotella bivia JCVIHMP010]
          Length = 451

 Score =  328 bits (840), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 121/455 (26%), Positives = 207/455 (45%), Gaps = 24/455 (5%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +     + GC++N  ++       ++ G       + AD++++NTC + E A  K    +
Sbjct: 10  KTAKFYTLGCKLNFSETSTFARTLYNMGVHEAKKSEVADIVLINTCSVTEVADHKCRQII 69

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R+       +++     V+V GC AQ E E +      VN+V+G      L + L  A 
Sbjct: 70  NRM-------VRQNPGAFVIVTGCYAQLESETVAN-IEGVNLVLGSNEKANLVQYLSDAW 121

Query: 145 FGKRVVDTDYSVEDK------FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
                V T    E+K       + ++      +R      FL +Q+GC+ FCT+C +PY 
Sbjct: 122 NKVEEVSTANGEENKKYHTVKTKDITTFQASCSRGNRTRYFLKVQDGCNYFCTYCTIPYA 181

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258
           RG   + S++ +V +A + +  G  EI L G N+    G        +F DL+ +L +++
Sbjct: 182 RGFSRNPSIASLVKQAEEAVAEGGREIVLTGVNI----GDFGRTTSESFLDLVKALDKVE 237

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           G+ R R ++  P  + D LI         MP+ H+P+QSGSD +LK M+R +    +   
Sbjct: 238 GIERYRISSLEPDLIDDELIAYCATSKHFMPHFHIPLQSGSDEVLKLMHRHYDRALFANK 297

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           I+ I+   P+  I  D +VG  GE  + F    + +D +   Q   F YS R GT   ++
Sbjct: 298 INLIKEYMPNAFIGVDVMVGSRGEKPEYFEDCYNFLDALPVTQLHVFPYSERPGTSALSI 357

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSV 438
              VD   K  R   L K   ++  +F    +GQ  ++L EK  + K  + G +     V
Sbjct: 358 PYVVDPREKKHRANRLLKLSDQKTQAFYAQHIGQEADILFEKAVRGKA-MHGFTDNYIRV 416

Query: 439 VL---NSKNHNIGDIIKVRITD--VKISTLYGELV 468
            L    +K+     I++VR+ D     + L  E++
Sbjct: 417 ELSPAEAKDEYDNKIVRVRLGDFNFDKTALKAEII 451


>gi|159045769|ref|YP_001534563.1| MiaB-like tRNA modifying enzyme [Dinoroseobacter shibae DFL 12]
 gi|157913529|gb|ABV94962.1| MiaB-like tRNA modifying enzyme [Dinoroseobacter shibae DFL 12]
          Length = 416

 Score =  328 bits (840), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 129/440 (29%), Positives = 199/440 (45%), Gaps = 36/440 (8%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
             + GC++N Y+S  M +M  + G         +D +V+NTC +  +A  K    + R+R
Sbjct: 6   FTTLGCRLNAYESEAMREMAEAAGL--------SDALVVNTCAVTAEAVRKSRQEIRRLR 57

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA----- 143
                  ++  D  ++V GC AQ E E      P V  V+G     +             
Sbjct: 58  -------RDNPDAPIIVTGCAAQTEPETFAA-MPEVTRVLGNTEKMQPETWAALVPDLIG 109

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           R  +  VD   SV +    L     G+ R R   A++ +Q GCD  CTFC++PY RG   
Sbjct: 110 RTERVQVDDIMSVRETAGHLI---DGFGRHR---AYVQVQNGCDHRCTFCIIPYGRGNSR 163

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           S     VVD+ ++L+D G  E+ L G ++ +W G  L G       ++  L  +  L RL
Sbjct: 164 SVPAGVVVDQIKRLVDRGFNEVVLTGVDLTSW-GADLPGTPRLGDLVMRILRLVPDLPRL 222

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R ++    +  + L++A      LMP+LHL +Q+G D ILK M RRH   +     +  R
Sbjct: 223 RISSIDSIEADENLMRAIATEPRLMPHLHLSLQAGDDLILKRMKRRHLRDDAIAFCEEAR 282

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
            +RP++   +D I GFP ET+  F  ++ LV          F YSPR GTP + M   V 
Sbjct: 283 RLRPEMTFGADIIAGFPTETEAMFENSLRLVTDCDLTWLHVFPYSPRKGTPAARMP-AVP 341

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
                +R   L+     Q      A  G+  ++LIE         +GR+     V   ++
Sbjct: 342 GAAIKDRAARLRALGATQVARHLAAQQGRTHKILIESP------RLGRTEQFTEVAF-AE 394

Query: 444 NHNIGDIIKVRITDVKISTL 463
           +H  G I++ RIT +    L
Sbjct: 395 DHPEGQIVEARITGIAGQRL 414


>gi|56695195|ref|YP_165541.1| MiaB-like tRNA modifying enzyme [Ruegeria pomeroyi DSS-3]
 gi|56676932|gb|AAV93598.1| MiaB-like tRNA modifying enzyme [Ruegeria pomeroyi DSS-3]
          Length = 418

 Score =  328 bits (840), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 118/446 (26%), Positives = 197/446 (44%), Gaps = 33/446 (7%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
            P+     + GC++N Y++  M+++    G +        + +++NTC +  +A  K   
Sbjct: 3   APK---FTTLGCRLNAYETEAMKELSAQAGLD--------NAVIVNTCAVTAEAVRKARQ 51

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR---LPEL 139
            + R+R       +E     ++V GC AQ E E     +  V+ V+G     R      +
Sbjct: 52  EIRRLR-------RENPTARLIVTGCAAQTEPETFTAMA-EVDAVIGNTEKMRPETWKSM 103

Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
                     V  D  +        ++DG   R R   A++ +Q GCD  CTFC++PY R
Sbjct: 104 TADFIGETEAVQVDDIMSVTETAGHLIDGFGTRSR---AYVQVQNGCDHRCTFCIIPYGR 160

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G   S     VVD+ ++L+D G  E+ L G ++ +W G  L  +      ++  L  +  
Sbjct: 161 GNSRSVPAGVVVDQIKRLVDRGYNEVVLTGVDLTSW-GADLPAQPKLGDLVMRILRLVPD 219

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           L RLR ++    ++ + L++       LMP+LHL +Q G D ILK M RRH   +  +  
Sbjct: 220 LPRLRISSIDSIEVDENLMQGIATEPRLMPHLHLSLQHGDDLILKRMKRRHLRDDAIRFA 279

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
           +  R +RP++   +D I GFP ET+  F  ++ LVD         F YS R GTP + + 
Sbjct: 280 EEARRLRPEMTFGADIIAGFPTETEAHFENSLKLVDDCHLTWLHVFPYSRREGTPAAKIP 339

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV 439
            QV+  +  ER   L+     +        VG+   +L+E         +GR+     V 
Sbjct: 340 SQVNGKIIKERAARLRAAGDRRVALHLAEQVGRSHRILMESP------HMGRTEQFTEVH 393

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYG 465
            ++     G I+   IT    + L  
Sbjct: 394 FDTPQPE-GQIVTTTITGTSGNALTA 418


>gi|221222491|sp|O29021|Y1247_ARCFU RecName: Full=Putative methylthiotransferase AF_1247
          Length = 424

 Score =  328 bits (840), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 123/447 (27%), Positives = 223/447 (49%), Gaps = 31/447 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R  +++YGC  N  DS  M      +    ++S++DA+++++N+C + +    K    + 
Sbjct: 2   RVAIETYGCTTNQADSDIMRGFLSGEF--ELSSVEDAEVVIINSCGVIDFTERK---IIR 56

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R+ +LK    K      VV+AGC+ +   E +     + +  + P     + + +  A  
Sbjct: 57  RMLDLKREGKK------VVLAGCLTRISKEALS----VADSALSPDNLDMVVDAVYSALN 106

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G+++    ++     ++          +    A ++I EGC   C+FC   + RG   S 
Sbjct: 107 GRKL----FTERRFIDKAEFSHLKCRLRENAIAIVSISEGCLGKCSFCATKFARGRLRSF 162

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           S+  +V EA + +  G  EI L  Q+  A+   G+D  +    +LL  +SEI+G  R+R 
Sbjct: 163 SMDAIVREAERAVRAGYREIQLTSQDTGAY---GMDKGRAMLPELLRKISEIEGEFRVRV 219

Query: 266 TTSHPRD---MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
              +P+    M D LI A+   + +  +LH+PVQSG +RIL+ M R HT  +Y ++++  
Sbjct: 220 GMMNPQHAVRMLDELINAY-SSEKIYKFLHIPVQSGDNRILEDMKRNHTVEDYVEVVEAF 278

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+   D+ IS+D IVGFP ET++ F  + +L+ +         +YS R GTP + + + +
Sbjct: 279 RNSFDDVLISTDIIVGFPTETEEAFWKSYELIKETRPDIVNITRYSARKGTPAARLRD-I 337

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
              +K ER   L   +R+  +  N   VG+ + VL+ K GK  G+ + R    ++VV   
Sbjct: 338 PGWIKKERSRKLTDLMRKIGLENNKRFVGKKLRVLVTKEGK-NGRNLARMNSYRAVVTEG 396

Query: 443 KNHNIGDIIKVRITDVKISTLYGELVV 469
               +G+ ++V+I D + + L G+L  
Sbjct: 397 A---VGEFVEVKIKDCRFNYLIGQLAA 420


>gi|213514974|ref|NP_001134025.1| CDK5 regulatory subunit-associated protein 1 [Salmo salar]
 gi|209156200|gb|ACI34332.1| CDK5 regulatory subunit-associated protein 1 [Salmo salar]
          Length = 469

 Score =  328 bits (840), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 122/368 (33%), Positives = 213/368 (57%), Gaps = 24/368 (6%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +    ++YGCQMNV D+     +   +GY+R + + +AD+++L TC IREKA + +++ L
Sbjct: 95  RTVCFETYGCQMNVNDTEIAWSILQKKGYQRTSDVAEADVVLLVTCSIREKAEQTIWNRL 154

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            ++  +K  R+K    + + V GC+A+    E+L R  +++V+ GP  Y  LP LL  A 
Sbjct: 155 RQLTAMKKRRLKTRVPMKIGVLGCMAERLKSELLEREKLLDVLAGPDAYRDLPRLLSVAH 214

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G++  +   S+E+ +  +  V   ++  +G++AF++I  GCD  C++C+VP+TRG E S
Sbjct: 215 GGQQASNVLLSLEETYADVMPV---HHSPQGLSAFVSIMRGCDNMCSYCIVPFTRGRERS 271

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD---------------------GE 243
           R +S +++E   L + GV E+T+LGQNVN++R    +                       
Sbjct: 272 RPVSSILEEVHILSEQGVKEVTMLGQNVNSYRDTSEEQFCSSEPGQLSRGFRTVYRARPG 331

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
              F+DLL  +S I   +R+R+T+ HP+D  D +++   +   +   +HLP QSGS  +L
Sbjct: 332 GLRFADLLDRVSLIDPDMRIRFTSPHPKDFPDEVLQLIKERANICKQVHLPAQSGSSTVL 391

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           ++M R ++   Y +++D I+++ P +++SSDFI GF GET++D   T+ L+ ++ Y   F
Sbjct: 392 QAMRRGYSREAYLELVDNIKTIIPGVSLSSDFISGFCGETEEDHLQTLSLIREVRYNVGF 451

Query: 364 SFKYSPRL 371
            F YS R 
Sbjct: 452 LFAYSMRK 459


>gi|290956994|ref|YP_003488176.1| radical SAM protein [Streptomyces scabiei 87.22]
 gi|260646520|emb|CBG69617.1| putative radical SAM protein [Streptomyces scabiei 87.22]
          Length = 475

 Score =  328 bits (840), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 125/466 (26%), Positives = 205/466 (43%), Gaps = 44/466 (9%)

Query: 40  DSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGG 99
           DS  +     + G+E V   ++AD+ V+NTC   E A +     L    +LK      G 
Sbjct: 2   DSEELAGRLEADGWELVEDAEEADVAVVNTCGFVEAAKKDSVDALLEANDLKG----HGR 57

Query: 100 DLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG------------- 146
              VV  GC+A+  G+E+    P  + V+G   Y  + + L+    G             
Sbjct: 58  TQAVVAVGCMAERYGKELAEALPEADGVLGFDDYADISDRLQTILNGGIHASHTPRDRRK 117

Query: 147 -------------KRVVDTDYSVEDKFERLSIVDGGYNRKRG-----VTAFLTIQEGCDK 188
                          V    ++  D  E L+   G  +  R        A + +  GCD+
Sbjct: 118 LLPISPAQRQESAAEVALPGHAPVDLPEGLAPASGPRSPLRRRLDGSPVASVKLASGCDR 177

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS 248
            C+FC +P  RG  ISR  S V++E R L + GV E+ L+ +N N   GK L G+     
Sbjct: 178 RCSFCAIPSFRGSFISRRPSDVLNETRWLAEQGVKEVMLVSEN-NTSYGKDL-GDIRLLE 235

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
            LL  L+E+ G+ R+R +   P +M   LI        ++PY  L  Q  +  +L+SM R
Sbjct: 236 SLLPELAEVDGIERVRVSYLQPAEMRPGLIDVLTSTPKVVPYFDLSFQHSAPAVLRSMRR 295

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
                 + +++D IR   P+  + S+FIVGFPGE++DD       ++         F YS
Sbjct: 296 FGDTDRFLELLDTIRGKAPEAGVRSNFIVGFPGESEDDLAELERFLNGARLDAIGVFGYS 355

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL 428
              GT  +    ++ E+V AERL  + +   E      +  VGQ + VL+E    E+G  
Sbjct: 356 DEDGTEAATYENKLPEDVVAERLARVSRLAEELVSQRAEERVGQTVRVLVESVDGEEGAY 415

Query: 429 VGR----SPWLQS-VVL-NSKNHNIGDIIKVRITDVKISTLYGELV 468
            GR    +P     V+  + +  ++G +++ ++   +   L  E++
Sbjct: 416 -GRAAHQAPETDGQVLFTSGEELSVGLMVEAKVVGTEGVDLVAEVL 460


>gi|301065032|ref|ZP_07205377.1| MiaB-like protein [delta proteobacterium NaphS2]
 gi|300440881|gb|EFK05301.1| MiaB-like protein [delta proteobacterium NaphS2]
          Length = 437

 Score =  328 bits (840), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 129/444 (29%), Positives = 210/444 (47%), Gaps = 17/444 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
            F V + GC++N Y+S  ME+     G+ R      A ++V+NTC + +KAA +    + 
Sbjct: 3   TFKVITLGCKVNQYESAFMEESLSKAGWHRTTDESAAHVLVVNTCVVTQKAAHQSRQAIR 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER--A 143
           +        I+E     V   GC AQA  EE+     I  ++   +    +P LL     
Sbjct: 63  KA-------IRENPKAKVAAVGCYAQAFPEELETIDGIA-LIANNRIKAEIPRLLTELPK 114

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
              KR     +  E  F+ L I     N      A+L IQ+GC  FCT+C+VPYTRG   
Sbjct: 115 FSQKRAFLPPFETETPFDALKI----CNFPGRTRAYLKIQDGCRSFCTYCIVPYTRGPYR 170

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           S +  +V+D        G  E+ L G ++    G  L G K   + LL  + E    +R+
Sbjct: 171 SLAPEKVLDALEGFARKGYREVVLTGIHLG-KYGVDLPG-KTDLTGLLKMVGEKSLPLRV 228

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R ++  P+++   LI+         P+ H+P+QSG D+ILK MNR +   ++ +II+ I 
Sbjct: 229 RLSSMEPQELPTELIEMAASESWFCPHFHIPLQSGDDQILKKMNRHYNTKDFAKIIETIH 288

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           +  P  AI  D + GFPGE     +  + L++ +  +    F +SPR GTP  +    VD
Sbjct: 289 TAMPLGAIGVDVMAGFPGEDLAAHKNAVSLLEALPVSYLHVFPFSPRKGTPAWHYKNSVD 348

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSVVLNS 442
             +  ER   L+   RE+++ F   C+G   +VL+E  + ++K  + G +      V   
Sbjct: 349 IEIVKERARELRILGREKRMLFYKKCLGHHFDVLVEGAYARDKDLMTGAAENYLPFVFLR 408

Query: 443 KNHNIGDIIKVRITDVKISTLYGE 466
            +   G I+++R   +  + + GE
Sbjct: 409 DDSLKGRIVRMRAVRISENRVLGE 432


>gi|260591614|ref|ZP_05857072.1| Fe-S oxidoreductase [Prevotella veroralis F0319]
 gi|260536414|gb|EEX19031.1| Fe-S oxidoreductase [Prevotella veroralis F0319]
          Length = 454

 Score =  328 bits (840), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 125/458 (27%), Positives = 206/458 (44%), Gaps = 27/458 (5%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +     + GC++N  ++       ++ G       + AD+ ++NTC + E A  K    +
Sbjct: 10  KTAKFYTLGCKLNFSETSTFARTLYNMGVREAKKSESADICLINTCSVTEVADHKCRQII 69

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R+       +++     V+V GC AQ E E I  +   V++V+G      L + L  A 
Sbjct: 70  HRM-------VRQNPGAFVIVTGCYAQLESETIA-KIEGVDLVLGSNEKADLIQYLSDAW 121

Query: 145 FGKRVVDTDYSVED---------KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
               V     +  +         K + +       +R      FL +Q+GC+ FCT+C +
Sbjct: 122 NKTDVDSIGDNPTEEGKGQYHSVKTKDIKSFQASCSRGNRTRYFLKVQDGCNYFCTYCTI 181

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
           PY RG   + S++ +V +A +    G  EI L G N+    G   +     F DL+ +L 
Sbjct: 182 PYARGFSRNPSIASLVQQAEEAAKEGGKEIVLTGVNI----GDFGETTGERFLDLVKALD 237

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
           +++G+ R R ++  P  + D LI+        MP+ H+P+QSGSD +LK M+RR+    +
Sbjct: 238 KVEGIERFRISSLEPDLIDDDLIEYCAQSRAFMPHFHIPLQSGSDEVLKLMHRRYDTKLF 297

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
              I+ I+   PD  I  D +VG  GE  + F    + +  +   Q   F YS R GT  
Sbjct: 298 AHKINLIKEKMPDAFIGVDVMVGSRGERPEYFEDCYNFLASLPVTQLHVFPYSERPGTSA 357

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWL 435
            ++   VD   K  R   L K   E+  +F  A +GQ  +VL EK  + K  + G +   
Sbjct: 358 LSIPYVVDNREKKHRAHKLLKLSDEKTHAFYAAHIGQEADVLFEKAARGKA-MHGFTDNY 416

Query: 436 QSVVLN---SKNHNIGDIIKVRITD--VKISTLYGELV 468
             V L+   +K      II+VR+       S+L  EL+
Sbjct: 417 IRVELSPSQAKEEYDNQIIRVRLGGFNYDQSSLKAELL 454


>gi|153823302|ref|ZP_01975969.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Vibrio cholerae B33]
 gi|126519166|gb|EAZ76389.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Vibrio cholerae B33]
          Length = 313

 Score =  327 bits (839), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 149/317 (47%), Positives = 211/317 (66%), Gaps = 6/317 (1%)

Query: 109 VAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK-RVVDTDYSVEDKFERLSIVD 167
           VA  EG+ I  R+P V+V+ GPQT +RLPE++++++     V+D  +   +KF+RL    
Sbjct: 1   VATQEGDSIRDRAPYVDVIFGPQTLHRLPEMIKQSQTSDAPVMDISFPEIEKFDRLP--- 57

Query: 168 GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITL 227
               R  G TAF++I EGC K+CT+CVVPYTRG E+SR +  V+ E  +L + GV E+ L
Sbjct: 58  --EPRAEGPTAFVSIMEGCSKYCTYCVVPYTRGEEVSRPMDDVLFEIAQLAEQGVREVNL 115

Query: 228 LGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL 287
           LGQNVNA+RG   DG  C+F++LL  ++ I G+ R+R+TTSHP + +D +I  + D   L
Sbjct: 116 LGQNVNAYRGATHDGGICSFAELLRLVATIDGIDRIRFTTSHPLEFTDDIIAVYEDTPEL 175

Query: 288 MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDF 347
           + +LHLPVQSGSDRIL  M R HTA EY+ II ++R  RPDI ISSDFIVGFPGETD DF
Sbjct: 176 VSFLHLPVQSGSDRILTMMKRPHTAIEYKSIIRKLRKARPDIQISSDFIVGFPGETDKDF 235

Query: 348 RATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFND 407
           + TM L+  + +  +FSF +SPR GTP ++    + E VK ERL  LQ+++  Q + ++ 
Sbjct: 236 QDTMKLIRDVDFDMSFSFIFSPRPGTPAADYPCDLSEEVKKERLYELQQQINSQAMRYSR 295

Query: 408 ACVGQIIEVLIEKHGKE 424
             +G    +L+E   K+
Sbjct: 296 LMLGTEQRILVEGPSKK 312


>gi|149912565|ref|ZP_01901099.1| MiaB-like tRNA modifying enzyme [Roseobacter sp. AzwK-3b]
 gi|149812971|gb|EDM72797.1| MiaB-like tRNA modifying enzyme [Roseobacter sp. AzwK-3b]
          Length = 419

 Score =  327 bits (839), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 126/450 (28%), Positives = 202/450 (44%), Gaps = 38/450 (8%)

Query: 21  CIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKV 80
              P+     + GC++N Y++  M+++    G E        + +++NTC +  +A  K 
Sbjct: 2   TGAPK---FTTLGCRLNAYETEAMKELSQQAGLE--------NAVIVNTCAVTAEAVRKA 50

Query: 81  YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL- 139
              + R+R       +E     ++V GC AQ E E      P V+ V+G     +     
Sbjct: 51  RQEIRRLR-------RENPTARLIVTGCAAQTEPET-FTAMPEVDAVIGNTEKMQPSTWA 102

Query: 140 -LERARFGKR---VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
            L     G+     VD   SV +    L  +DG   R R   A++ +Q GCD  CTFC++
Sbjct: 103 GLAADFIGETEACQVDDIMSVTETAGHL--IDGFGTRSR---AYVQVQNGCDHRCTFCII 157

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
           P+ RG   S     VVD+ ++L+D G  E+ L G ++ +W G  L  E      ++  L 
Sbjct: 158 PFGRGNSRSVPAGVVVDQIKRLVDRGFNEVVLTGVDLTSW-GADLPAEPRLGDLVMRILK 216

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
            +  L RLR ++    ++ D L++A      LMP+LHL +Q G D ILK M RRH   + 
Sbjct: 217 LVPDLPRLRISSIDSIEVDDNLMQAIATEKRLMPHLHLSLQHGDDLILKRMKRRHLRDDA 276

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
            + ++  R +RP++   +D I GFP ET+  F  ++ LV++        F YSPR GTP 
Sbjct: 277 IRFVEEARGLRPEMTFGADIIAGFPTETEAAFANSLKLVEECDLTWLHVFPYSPRPGTPA 336

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWL 435
           + M  QV+     ER   L+     Q         G+   +L+E         +GR+   
Sbjct: 337 ARMP-QVNGRDIKERAARLRAAGERQVTRHLAEQQGRTHYILMESA------RMGRTEQF 389

Query: 436 QSVVLNSKNHNIGDIIKVRITDVKISTLYG 465
             V  ++     G I+   I   +   L  
Sbjct: 390 TEVTFDADQSE-GHIVTATIAGTRGHQLVA 418


>gi|260464162|ref|ZP_05812355.1| MiaB-like tRNA modifying enzyme [Mesorhizobium opportunistum
           WSM2075]
 gi|259029965|gb|EEW31248.1| MiaB-like tRNA modifying enzyme [Mesorhizobium opportunistum
           WSM2075]
          Length = 446

 Score =  327 bits (839), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 133/464 (28%), Positives = 210/464 (45%), Gaps = 34/464 (7%)

Query: 8   IGVAHMVSQIVDQCI--VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLI 65
           + VA   S  VD  +   P R  V ++GC++N Y+S  M                    +
Sbjct: 1   MSVALSKSPNVDGSLSEAPSRIDVVTFGCRLNTYESEVMRREAE----TAGLGALAGGAV 56

Query: 66  VLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVN 125
           + NTC +  +A  +    + + R       ++     ++V GC AQ E E+       V+
Sbjct: 57  IFNTCAVTGEAVRQARQAIRKAR-------RDNPQARIIVTGCAAQTEPEKFAA-MDEVD 108

Query: 126 VVVGPQTYYRLPELLERARFG-----KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFL 180
           +V+G +   R         FG     K  V+  +SV +    +  VD    R R   AF+
Sbjct: 109 LVLGNEEKLRAHSYRALPDFGVNDTEKARVNDIFSVRETAGHM--VDAIEGRAR---AFV 163

Query: 181 TIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL 240
            +Q GCD  CTFC++PY RG   S  +  VV++ ++L  NG  EI L G ++ ++ G  L
Sbjct: 164 QVQNGCDHRCTFCIIPYGRGNSRSVPMGAVVEQVKRLAGNGYAEIVLTGVDMTSF-GADL 222

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300
            G       +   L ++  + RLR ++    +  D L+ A  +   LMP+LHL +QSG D
Sbjct: 223 PGAPKLGKLVKTILRQVPDVKRLRLSSIDSIEADDELLDAIANEPRLMPHLHLSLQSGDD 282

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
            ILK M RRH   +  +  + +R +RP I   +D I GFP ETDD F  ++++V + G  
Sbjct: 283 MILKRMKRRHLRDQSIRFCEDVRKLRPAIVFGADIIAGFPTETDDMFENSINIVAECGLT 342

Query: 361 QAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
               F +SPR GTP + M  Q+   V  +R   L+            +  G    +LIE+
Sbjct: 343 HLHVFPFSPREGTPAARMP-QLRREVVKQRAARLRAAGEAAYRRHLSSLPGTRQSILIER 401

Query: 421 HGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLY 464
            G      +GR+       L +     G+I++  ITD   + L 
Sbjct: 402 DG------LGRTEGFTLAALGTGA--PGEIVEATITDHDGARLI 437


>gi|70606747|ref|YP_255617.1| hypothetical protein Saci_0962 [Sulfolobus acidocaldarius DSM 639]
 gi|68567395|gb|AAY80324.1| universally conserved protein [Sulfolobus acidocaldarius DSM 639]
          Length = 421

 Score =  327 bits (839), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 127/446 (28%), Positives = 228/446 (51%), Gaps = 30/446 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R ++++YGC +N  DS  M  +   +G+E V+++ DA+++V+NTC +R +  E++   + 
Sbjct: 2   RVYIETYGCALNKGDSYIMMTLLRDKGHEIVDNIQDAEILVINTCAVRLETEERMKQRIK 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            ++   +          +VVAGC+A AE   ++  +P  + V+GPQ+  ++ +++E ++ 
Sbjct: 62  ELKKYNDK--------RLVVAGCLASAEPAVVVSLAPEAS-VIGPQSVQKIVDVVENSKQ 112

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            +  ++ D  +        I    ++   G  A L I +GC   C FC+    R    S 
Sbjct: 113 RQVYLNEDKPL--------ITPKVFD---GKIAILPIADGCAGDCNFCITKLARRKLRSY 161

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
               +V+  R  +  G  EI L GQ+  A+   GLD  +   SDL+  ++E++G   +R 
Sbjct: 162 PPHLIVESVRDAVRKGAVEIELSGQDTAAY---GLDLGQIKLSDLVRKVTEVEGDFMIRI 218

Query: 266 TTSHPRDMSDCL---IKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
               P      +   I+   +   +  ++HLPVQSG D +LK MNR++T  EY+ ++  I
Sbjct: 219 GMMTPEQAMRDIDGIIEVLRET-KVYKFIHLPVQSGDDNVLKLMNRKYTVDEYKDLVKEI 277

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R   P + I++D I+G PGE ++ FR T++L+  I + +     YS R  T  ++M +QV
Sbjct: 278 RKKVPIVNITTDIIIGHPGEDENAFRNTLELMRDIKFERIHLAMYSIRPNTRSASM-KQV 336

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
            + VK ER+    K   E     +   +  I  V+  ++G++ G ++GR+     VV+  
Sbjct: 337 PDPVKKERIQIANKLYEELAYEIHSDYLNSIASVITTEYGRK-GSVIGRTLNYIPVVI-R 394

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
           +N  +G  I VRI +     L GE +
Sbjct: 395 QNVELGKRINVRINEASFYDLRGEPI 420


>gi|15604281|ref|NP_220797.1| hypothetical protein RP416 [Rickettsia prowazekii str. Madrid E]
 gi|6226371|sp|Q9ZDB6|Y416_RICPR RecName: Full=Putative methylthiotransferase RP416
 gi|3860973|emb|CAA14873.1| unknown [Rickettsia prowazekii]
 gi|292572029|gb|ADE29944.1| MiaB-like tRNA modifying enzyme [Rickettsia prowazekii Rp22]
          Length = 421

 Score =  327 bits (839), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 119/440 (27%), Positives = 204/440 (46%), Gaps = 32/440 (7%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           + ++GC++N+Y+S  +       G +        ++ + NTC + + A ++    + + +
Sbjct: 14  IVTFGCRLNIYESEIIRKNLELSGLD--------NVAIFNTCAVTKSAEKQARQAIRKAK 65

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
                  K   DL ++V GC AQA   ++      V+ V+G +          +    K 
Sbjct: 66  -------KNNPDLKIIVTGCSAQANP-KMYGNMSEVDKVIGNEEKLLSHYY--QITDQKI 115

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
            V+   SV++    L     G +R     AF+ +Q GCD  CTFC++PY RG   S  + 
Sbjct: 116 SVNDIMSVKETACHLVSSFDGKSR-----AFIQVQNGCDHNCTFCIIPYVRGKSRSIPIG 170

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
            +V + + L+  G  E+ + G +V A  G  L G       +   L  +  L R+R ++ 
Sbjct: 171 TIVAQVKHLVLKGFKEVVITGVDVTA-YGSDLPGSPTFAQMIKRVLKLVPELKRMRLSSI 229

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
              ++ D L +     + +MP+ H+ VQSG D ILK M RRH      +   ++R++RP+
Sbjct: 230 DIAEIDDELFELIAYSERIMPHFHISVQSGDDMILKRMKRRHNRASVIEFCQKLRAIRPE 289

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           ++  +D I GFP ET++ F  T  L+ +        F YS R GTP + M  QV +N++ 
Sbjct: 290 VSFGADIIAGFPTETNEMFENTRKLILEAELQYLHVFPYSEREGTPAARMP-QVPQNIRK 348

Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIG 448
           ER   L++    Q   F    +GQ +E+LIE +       +  +     V L+ K   IG
Sbjct: 349 ERAKILRQDGFNQLNEFFKRHIGQKVELLIENNN------IAHTENFIPVKLD-KYLAIG 401

Query: 449 DIIKVRITDVKISTLYGELV 468
            I K  +  ++   +   LV
Sbjct: 402 QIFKAELVGIEEGYMKCVLV 421


>gi|302542094|ref|ZP_07294436.1| 2-methylthioadenine synthetase [Streptomyces hygroscopicus ATCC
           53653]
 gi|302459712|gb|EFL22805.1| 2-methylthioadenine synthetase [Streptomyces himastatinicus ATCC
           53653]
          Length = 498

 Score =  327 bits (839), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 123/486 (25%), Positives = 201/486 (41%), Gaps = 51/486 (10%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +   + + GC  N  DS  +       G+E V    DAD+ V+NTC   E A +     L
Sbjct: 5   RTVALVTLGCARNEVDSEELAGRLADDGWELVEQAADADVAVVNTCGFVEAAKKDSVDAL 64

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
               +LK+     G    VV  GC+A+  G+++    P  + V+G   Y  +   L+   
Sbjct: 65  LEANDLKD----HGRTQAVVAVGCMAERYGKDLAEALPEADGVLGFDDYADISGRLQTIL 120

Query: 145 FGKRVVDTDYSVEDKFERLSI----------------------------------VDGGY 170
            G   +   ++  D+ + L I                                       
Sbjct: 121 SGG--IHASHTPRDRRKLLPISPAERQDNSAVALPGHAQDTPPEDLPDGVAPASGPRAPL 178

Query: 171 NRK--RGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLL 228
            R+      A + +  GCD+ C+FC +P  RG  ISR  S V+ E R L + GV EI L+
Sbjct: 179 RRRLGNSPVASVKLASGCDRRCSFCAIPSFRGSFISRRPSDVLGETRWLAEQGVKEIMLV 238

Query: 229 GQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLM 288
            +N N   GK L G+      LL  L+ + G+ R+R +   P +M   LI      + + 
Sbjct: 239 SEN-NTSYGKDL-GDIRLLETLLPELAAVDGIERIRVSYLQPAEMRPGLIDVLTSTEKVA 296

Query: 289 PYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFR 348
           PY  L  Q  +  +L+ M R      + ++++ IR   P     S+FIVGFPGET+DD  
Sbjct: 297 PYFDLSFQHSAPGVLRRMRRFGDTDRFLELLETIRGKAPQAGARSNFIVGFPGETEDDLA 356

Query: 349 ATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDA 408
                + +        F YS   GT  +   ++VD +  AERL  + +   E      D 
Sbjct: 357 ELERFISEARLDAIGVFGYSDEDGTEAAGYEDKVDPDEVAERLEHISRLAEELTAQRADE 416

Query: 409 CVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVVL--NSKNHNIGDIIKVRITDVKIST 462
            +G+ + VL+++   + G ++GR    +P      L   S     G +++ ++   +   
Sbjct: 417 RLGETVTVLVDEID-DTGDVLGRAAHQAPETDGQTLLRTSARPAAGRMVEAKVIAAEGVD 475

Query: 463 LYGELV 468
           L  E +
Sbjct: 476 LVAEPL 481


>gi|325972021|ref|YP_004248212.1| ribosomal protein S12 methylthiotransferase rimO [Spirochaeta sp.
           Buddy]
 gi|324027259|gb|ADY14018.1| Ribosomal protein S12 methylthiotransferase rimO [Spirochaeta sp.
           Buddy]
          Length = 449

 Score =  327 bits (839), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 110/454 (24%), Positives = 202/454 (44%), Gaps = 22/454 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ ++++ GC  N  D+  +  +     +     + +ADLI++NTC   E A E+     
Sbjct: 2   KKVYMENLGCSKNQVDAETLIKLLEDDQFTHTTEVAEADLIMVNTCGFIESAREQSIESF 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             +               ++++GC+AQ   +E+       + + G +   ++ E++ +  
Sbjct: 62  FSLHEA-------NPQAKIILSGCMAQRYAKELQDELGEASAIFGNRDLSKIHEVVRQVF 114

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G RV++     +   E   + +         +A+L I EGC+ +C++C +P  RG   S
Sbjct: 115 AGDRVIELPSYPDLANE---VYERNELLSFPGSAYLKISEGCNHWCSYCAIPLIRGGLRS 171

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           +    ++ EAR LI+ G+ EI L+ Q++ A  G     +   F DLL +L  + G   +R
Sbjct: 172 KLKETILIEARTLIERGIKEINLIAQDLAA-YGTDGPDKSSKFMDLLEALVALDGDFSIR 230

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
               +P      L K   +   ++PY  +P Q    ++L+SM R  T   Y  +I+ IR+
Sbjct: 231 LLYIYPDAFPPTLAKFIAEHKKVLPYFDIPFQHADQKVLQSMGRTGTKESYLSLIESIRN 290

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             P+  I S  ++G+P E D  F   +D + K       SF YS   GT   ++  +  E
Sbjct: 291 TVPEAVIRSTILLGYPTEDDKAFAEVLDFLSKAKLDWVGSFTYSREEGTKAYSLRGER-E 349

Query: 385 NVKAERL-----LCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK----GKLVGRSPWL 435
           + KA +L       LQ        +     VG+  EVLIE+  + +    G++ G++P +
Sbjct: 350 HKKANKLAQGYQAQLQALQGPITNANLARFVGKEYEVLIEELVEGEDLAIGRMYGQAPEV 409

Query: 436 QSV-VLNSKNHNIGDIIKVRITDVKISTLYGELV 468
             + V+  ++   G  +   I  V    L    V
Sbjct: 410 DGLTVVLGRSLKPGQKVLCGIRAVNGLDLEAVPV 443


>gi|154251867|ref|YP_001412691.1| MiaB-like tRNA modifying enzyme [Parvibaculum lavamentivorans DS-1]
 gi|154155817|gb|ABS63034.1| MiaB-like tRNA modifying enzyme [Parvibaculum lavamentivorans DS-1]
          Length = 420

 Score =  327 bits (839), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 129/440 (29%), Positives = 205/440 (46%), Gaps = 33/440 (7%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           + ++GC++N Y+S  M     + G      +D A  IV NTC +  +A  +    + + R
Sbjct: 7   IVTFGCRLNAYESEVMRGHAEAAG------LDGA--IVFNTCAVTAEAERQARQAIRKAR 58

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL---LERARF 145
                  +E     ++V GC AQ   +     +  V++V+G +   +       L     
Sbjct: 59  -------RENPQARIIVTGCAAQVNPDAFAEMT-EVDLVIGNEEKLQAASWQPALALHTN 110

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            +  V+   SV +    L     G  R     AF+ +Q GCD  CTFC++PY RG   S 
Sbjct: 111 ERVRVNDIMSVTETAGHLVGGLEGRAR-----AFVQVQNGCDHRCTFCIIPYGRGPSRSV 165

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
              +VV++ R L+ NG  E+ L G ++ +  G  L G     +     L  +  L RLR 
Sbjct: 166 PAGEVVNQVRTLVGNGYREVVLTGVDMTS-YGGDLPGRPSLGNLARRILKLVPELERLRL 224

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
           ++    +  D L++   + + LMP+LHL +QSG D ILK M RRH   +  +  + +R  
Sbjct: 225 SSIDSIEADDELMRLIAEEERLMPHLHLSLQSGDDMILKRMKRRHLREDSIRFCEDVRKA 284

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
           RPDI   +DFI GFP ETD+ F  TM LVD+ G      F +SPR GTP + M  QV   
Sbjct: 285 RPDIIFGADFIAGFPTETDEMFENTMRLVDECGLTWLHVFPFSPRPGTPAAKMP-QVSRE 343

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445
           +   R   L+ K  E+  +  ++ +G    VL+E         +GR+     V + ++  
Sbjct: 344 MGKARAERLRMKGAERVRAHLESGLGATRPVLMETP------TLGRTHQFTPVRV-TEAA 396

Query: 446 NIGDIIKVRITDVKISTLYG 465
             G+I+ +R+      +  G
Sbjct: 397 TAGEILPLRLAAHDGQSFEG 416


>gi|294809243|ref|ZP_06767959.1| MiaB-like protein [Bacteroides xylanisolvens SD CC 1b]
 gi|294443637|gb|EFG12388.1| MiaB-like protein [Bacteroides xylanisolvens SD CC 1b]
          Length = 418

 Score =  327 bits (839), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 113/434 (26%), Positives = 200/434 (46%), Gaps = 18/434 (4%)

Query: 17  IVDQCIVPQRFFVK-SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREK 75
           ++D  +   +  V  + GC++N  ++  +  +    G       + AD+ V+NTC + E 
Sbjct: 1   MIDTTVFQNKTAVYYTLGCKLNFSETSTIGKILREAGVRTARKGEKADICVVNTCSVTEM 60

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135
           A +K    + R+       +K+  D  VVV GC AQ +  ++  +   V+VV+G +    
Sbjct: 61  ADKKCRQAIHRL-------VKQHPDAFVVVTGCYAQLKPGDVA-KIDGVDVVLGAEQKGE 112

Query: 136 LPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
           L + L   +  ++      + +D            +R      FL +Q+GCD FC++C +
Sbjct: 113 LLQYLGDLQKHEKGEAITTTTKDIRSFSP----SCSRGDRTRFFLKVQDGCDYFCSYCTI 168

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
           P+ RG   + +++ +V++AR+    G  EI L G N+    G        +F DL+ +L 
Sbjct: 169 PFARGRSRNGTIASMVEQARQAAAEGGKEIVLTGVNI----GDFGKTTGESFFDLVKALD 224

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
           +++G+ R R ++  P  ++D +I+        MP+ H+P+QSG D +L+ M RR+    +
Sbjct: 225 QVEGIERYRISSIEPNLLTDEIIEFVSHSRSFMPHFHIPLQSGCDEVLQLMRRRYDTALF 284

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
              + +I+ V PD  I  D IVG  GET + F      +D +   Q   F YS R GT  
Sbjct: 285 ASKVKKIKEVMPDAFIGVDVIVGTRGETPEYFEQAYQFIDGLDVTQLHVFSYSERPGTQA 344

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWL 435
             +   V    K +R   L     ++  +F    +GQ + VL+EK  K    + G +   
Sbjct: 345 LKIEYVVSPEEKHQRSQRLLALSDQKTQAFYARHIGQTMPVLMEK-SKAGAPMHGFTENY 403

Query: 436 QSVVLNSKNHNIGD 449
             V + S +     
Sbjct: 404 IRVEVESDDSLDNQ 417


>gi|110678170|ref|YP_681177.1| MiaB-like tRNA modifying enzyme [Roseobacter denitrificans OCh 114]
 gi|109454286|gb|ABG30491.1| MiaB-like tRNA modifying enzyme, hypothetical [Roseobacter
           denitrificans OCh 114]
          Length = 417

 Score =  327 bits (839), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 129/446 (28%), Positives = 205/446 (45%), Gaps = 34/446 (7%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
            P+     + GC++N Y++  M+++    G         +D +V+NTC +  +A  K  S
Sbjct: 3   APK---FTTLGCRLNAYETEAMKELAAEAGL--------SDAVVVNTCAVTGEAVRKARS 51

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR--LPELL 140
            + ++R       +E     ++V GC AQ E +      P VN V+G     +      L
Sbjct: 52  TIRKLR-------RENPTARLIVTGCAAQTEPQTFAA-MPEVNAVIGNTEKMQGDTWGAL 103

Query: 141 ERARFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
                G+   V  D  +        ++DG   R R   A++ +Q GCD  CTFC++PY R
Sbjct: 104 AADFIGESEAVQVDDIMSVTETAGHLIDGFGTRSR---AYVQVQNGCDHRCTFCIIPYGR 160

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G   S     VVD+ ++L+D G  E+ L G ++ +W G  L  +      ++  L  +  
Sbjct: 161 GNSRSVPAGVVVDQIKRLVDKGFNEVVLTGVDLTSW-GADLPAQPKLGDLVMRILRLVPD 219

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           L RLR ++    ++ + L++A      LMP+LHL +Q G D ILK M RRH   +  +  
Sbjct: 220 LPRLRISSIDSIEVDENLMQAIATEHRLMPHLHLSLQHGDDMILKRMKRRHLRDDAIRFA 279

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
              R +RPD+   +D IVGFP ET+  F  ++ LV++        F YS R GTP + M 
Sbjct: 280 QDARRLRPDMTFGADIIVGFPTETEAMFDNSLALVEECDLTWLHVFPYSARPGTPAARMP 339

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV 439
             V   +  ER   L+     Q      A VG++  VL+E   +      GR+     V 
Sbjct: 340 -AVHGQIIKERASRLRAAGDAQVQRHLSAQVGKVHNVLMESASR------GRTEQFTEVQ 392

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYG 465
           +++     G II + IT    + L G
Sbjct: 393 VSTPRQE-GRIIPLPITGTVGAALQG 417


>gi|16127914|ref|NP_422478.1| hypothetical protein CC_3684 [Caulobacter crescentus CB15]
 gi|221236734|ref|YP_002519171.1| tRNA 2-methylthioadenosine synthase-like protein [Caulobacter
           crescentus NA1000]
 gi|13425446|gb|AAK25646.1| conserved hypothetical protein [Caulobacter crescentus CB15]
 gi|220965907|gb|ACL97263.1| tRNA 2-methylthioadenosine synthase-like protein [Caulobacter
           crescentus NA1000]
          Length = 443

 Score =  327 bits (839), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 130/443 (29%), Positives = 208/443 (46%), Gaps = 32/443 (7%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
             V ++GC++N Y+S  M     + G         +D +V NTC +  +A  +    + +
Sbjct: 33  VDVVTFGCRLNAYESEAMRARASADGL--------SDAVVFNTCAVTNEAVRQARQAIRK 84

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
            R       +E     ++V GC AQ +        P V++V+G         L + +   
Sbjct: 85  AR-------RERPGARIIVTGCAAQVDPAAFAA-MPEVDLVLGNAEKAAPGALTDTSTRV 136

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           +  V+   S+++    L  +DG  +R R   A++ +Q GCD  CTFC++PY RG   S  
Sbjct: 137 R--VNDIMSIKETAGHL--IDGLKDRAR---AYVEVQNGCDHRCTFCIIPYGRGNSRSAP 189

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
             +VV++ RKL   G  E+ L G +V +W G  L G+      +   L  +  L RLR +
Sbjct: 190 AGEVVEQVRKLAAEGYREVVLTGVDVTSW-GADLPGQPTLGQLVGRILRMVPDLPRLRLS 248

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
           +    ++   L K       LMPYLHL +Q+G + ILK M RRH+  +  +++  +R VR
Sbjct: 249 SIDAAEIDPDLFKLLETEPRLMPYLHLSLQAGDNLILKRMKRRHSREDALKLVAEVRRVR 308

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           PD A  +D I GFP ETD+ F  T+ LV++ G A    F YS R GTP + M   V   V
Sbjct: 309 PDTAFGADLIAGFPTETDEAFENTLKLVEEAGLAFLHVFPYSARPGTPAARMPP-VKGPV 367

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHN 446
             +R   L++  +          VG+++  L+E+ G      V R+     +    +  +
Sbjct: 368 IKDRARRLREAGQRGLERHLQRQVGRVLSGLVERDG------VARAEDFTEIAFAGEAPS 421

Query: 447 IGDIIKVRITDVKISTLYGELVV 469
            G I+  R+T    S +  EL  
Sbjct: 422 -GQILAFRVTGHDGSRVIAELAA 443


>gi|260888225|ref|ZP_05899488.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Selenomonas sputigena
           ATCC 35185]
 gi|260862059|gb|EEX76559.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Selenomonas sputigena
           ATCC 35185]
          Length = 412

 Score =  327 bits (838), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 137/426 (32%), Positives = 215/426 (50%), Gaps = 16/426 (3%)

Query: 44  MEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLV 103
           ME +F  +GY  V   + AD+ V+NTC +     +K    + R R L           ++
Sbjct: 1   MEGLFRQRGYAIVPFDEAADVYVINTCSVTSLGEKKSRQLIRRARRL-------NERAVI 53

Query: 104 VVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERL 163
            V GC AQ   EEI      V VV+G +    + + +ERA     V D    +    E  
Sbjct: 54  AVTGCYAQVAPEEIRS-IEGVRVVLGTKERAAIVDHVERAAREAGVFDGTGDIMHASEFE 112

Query: 164 SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVC 223
            I   G   +    AFL I+EGC+ FC+FC++PY RG   SR L  V  EA KL+  G  
Sbjct: 113 DIPLFGAPAR--TRAFLKIEEGCENFCSFCIIPYARGPVRSRLLKSVRREAAKLLAMGFK 170

Query: 224 EITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGD 283
           EI L G ++  +   G D    T +D + ++  + GL RLR  +    ++SD L+     
Sbjct: 171 EIVLTGIHLGCY---GRDLGDVTLADAVRAVLSLPGLKRLRLGSLESIELSDDLLALLAQ 227

Query: 284 LDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGET 343
            +    +LHLP+Q+GSD +L++MNR +   ++  +I+R+    P +AIS+D IVGFPGET
Sbjct: 228 EERFAGHLHLPLQAGSDEVLRAMNRHYDTAKFAALIERVERAVPGVAISTDIIVGFPGET 287

Query: 344 DDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQV 403
            + F  ++  V+++ +A+   F YSPR GTP +    QV E  K ER+  +Q    ++  
Sbjct: 288 QELFEESLAFVERMNFARMHVFPYSPRRGTPAAAFAAQVPEAEKKERVHRMQALAAKKSE 347

Query: 404 SFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTL 463
           +F+ A +G  + VL E   + +G   G +     V  ++     GDI  +R+  +    +
Sbjct: 348 AFHAAFLGTEMPVLFE--TEREGVTDGLTANYIRVYTDAP-VRTGDIHAMRLVHLYRDGV 404

Query: 464 YGELVV 469
           +GEL+ 
Sbjct: 405 WGELLA 410


>gi|317490514|ref|ZP_07948992.1| MiaB-like tRNA modifying enzyme YliG [Eggerthella sp. 1_3_56FAA]
 gi|316910365|gb|EFV31996.1| MiaB-like tRNA modifying enzyme YliG [Eggerthella sp. 1_3_56FAA]
          Length = 455

 Score =  327 bits (838), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 117/463 (25%), Positives = 191/463 (41%), Gaps = 18/463 (3%)

Query: 14  VSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIR 73
           +    D  +V       + GC  N  D+ RM       G+   +   +AD +V+NTC   
Sbjct: 1   MESSSDAALVAPCVAFVTLGCAKNEADTARMRVRLAEAGFLIEDDPAEADAVVVNTCSFI 60

Query: 74  EKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTY 133
           + A E+    +     + N          ++VAGC+    GEE+          V     
Sbjct: 61  QSATEESIEAVFDAAGMPNVAA----GAPLIVAGCMPARYGEELADELVEARAFVPCSRE 116

Query: 134 YRLPELLERARF------GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCD 187
             +  ++  A        G     T  +     E                A++ I +GCD
Sbjct: 117 DDIAAIVADALGVDAPGGGAAASVTLSASGGAAEVEGSRAALAALPAAPFAYVKISDGCD 176

Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTF 247
           +FCT+C +PY RG   S  L  V  +    +  G  EI L+ Q+   W G   D E  + 
Sbjct: 177 RFCTYCTIPYIRGRYRSFPLDDVRADVAAQVAAGAREIVLIAQDTGRW-GADFD-EPSSL 234

Query: 248 SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307
           + L+ +L+E       R     P  +SD L+ A    D +  Y  +P+Q     IL++MN
Sbjct: 235 AALVAALAEEFPQTWFRIMYIQPEGLSDELLDAVAAHDNVCDYFDIPLQHVDAGILRAMN 294

Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           R  +  E+  ++ R+ +  P   + +  I GFPGET++ F      V++  +     F Y
Sbjct: 295 RTGSREEFLALVGRVLAHVPGATLRTTLIAGFPGETEEQFEDLCSFVEEGLFDYVGVFPY 354

Query: 368 SPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK 427
           S   GT   ++  Q+DE+ K +R   L+            A VG+ ++VL+E   +E G+
Sbjct: 355 SREEGTRAFDLPGQLDEDEKNDRAQRLRDLADAVCCPRIAARVGREMDVLVEGV-EEDGQ 413

Query: 428 LVGR----SPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGE 466
           L GR    +P +  V         G+I +VRI D  +  + GE
Sbjct: 414 LFGRAMCQAPEVDGVTYLDAGE-PGEIRRVRIVDALLYEMEGE 455


>gi|330995923|ref|ZP_08319818.1| tRNA methylthiotransferase YqeV [Paraprevotella xylaniphila YIT
           11841]
 gi|329574262|gb|EGG55837.1| tRNA methylthiotransferase YqeV [Paraprevotella xylaniphila YIT
           11841]
          Length = 447

 Score =  327 bits (838), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 120/455 (26%), Positives = 208/455 (45%), Gaps = 27/455 (5%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
            +  +  + GC++N  ++  +  +    G   V + + AD+ V+NTC + E A  K    
Sbjct: 10  KKAVYF-TLGCKLNFAETSTIGRLLKEMGVRTVRAGERADICVVNTCSVTEVADHKCRQA 68

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           + ++       +K+     VVV GC AQ + E++      V++V+G +    +   LE  
Sbjct: 69  IHKL-------VKQHPGAFVVVTGCYAQLKPEQV-SAIDGVDLVLGAEQKGDILRYLEER 120

Query: 144 R----FGKRVVDTDYS----VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
                  ++  D +++                   +R R    FL +Q+GCD +CT+C +
Sbjct: 121 LPLLPAERKSADAEHAAYTVPTKDIHTFVPSCSCGDRTR---YFLKVQDGCDYYCTYCTI 177

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
           PY RG   + S++ +V +A +    G  EI L G N+    G        +F DL+ +L 
Sbjct: 178 PYARGRSRNGSIASLVRQAEQAASEGGREIVLTGVNI----GDFGKTTGESFLDLVKALD 233

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
            ++G+ R R ++  P  +++ ++    +    MP+ H+P+QSGSD +LK M RR+T   +
Sbjct: 234 RVEGIARYRISSIEPNLLTEDVLAFCAESRAFMPHFHIPLQSGSDEVLKLMRRRYTTNFF 293

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
            + I R++ + PD  I  D IVG  GETD  F      +  +  +Q   F YS R GT  
Sbjct: 294 AEKISRVKELMPDAFIGVDVIVGTRGETDGCFEEAFGFIRSLDVSQLHVFSYSERPGTMA 353

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWL 435
             +   V    K  R   L +    +  +F    +G   EVL+EK  + +G + G +   
Sbjct: 354 LKIGHSVSPEEKHRRSQRLLELSDVKWEAFYRRYIGTEAEVLLEK-SRTEGVMHGFTANY 412

Query: 436 QSVVLNSKNHNIGDIIKVRITD--VKISTLYGELV 468
             V L  + +    I++VR+ D     S L   L+
Sbjct: 413 IRVELPVEGNLDNQIVRVRLGDFNAGRSALRATLL 447


>gi|2501539|sp|Q49573|Y16R_MYCIO RecName: Full=Putative methylthiotransferase in 16S RNA 5'region
          Length = 438

 Score =  327 bits (838), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 114/446 (25%), Positives = 227/446 (50%), Gaps = 20/446 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
            F + + GC++N+++S  +++     G   V     AD+ ++NTC +  KA  K   ++ 
Sbjct: 9   TFAIHTLGCKVNLFESNSIKNDLIMNGLVEVPFDSKADVYIINTCTVTNKADAKSRLYIK 68

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R          +  D +++VAGC++Q   +  L     +++ +G +    + +L+     
Sbjct: 69  RAH-------VQNKDAIIIVAGCMSQVNKD--LMDKLKISIQIGNKYKNSVFDLINEYLK 119

Query: 146 GKRVVDTDYSV--EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            +  +    ++  E KFE+       +       AF+ IQ+GC+  C++C++P++RG + 
Sbjct: 120 KRERIYRVENILAEKKFEQ---TTQDFIFLENTRAFIKIQDGCNFMCSYCIIPFSRGRQR 176

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           S+ +  ++++ + L+     EI L G N   +    LD    TF DLL +++++ G  R+
Sbjct: 177 SQKMESILEKIKTLVSKXFKEIVLTGVNTAGY----LDENNNTFFDLLNNINKLDGDFRV 232

Query: 264 RYTTSHPRDMSDCLIKAHGDLDV-LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           R ++  P  ++D +I            + H+ +QSGSD +LK MNR++T  E+ +++ +I
Sbjct: 233 RISSLEPFQINDEIIDLVTSNKKRFCQHWHICLQSGSDDVLKKMNRKYTTDEFYKLMQKI 292

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
            +  P    ++D+IVGFP ETD+D + ++D ++KI       F YS R  T  S+  + +
Sbjct: 293 LNKSPLTNFTTDYIVGFPTETDEDQKKSIDFLNKIKLYDMHIFPYSKRNNTRSSHYKD-I 351

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
           +++ K +R+  + K     +       +G+  EVL EK  +++    G S     V++ S
Sbjct: 352 NDSTKKDRVKEITKLNYLNKKENLKKYIGKTCEVLFEKKKEDEKMWSGYSNEYCRVMVES 411

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
            ++    ++KVRI  +   +L GE++
Sbjct: 412 GDNLENKMLKVRIKKIFFDSLVGEII 437


>gi|212224708|ref|YP_002307944.1| Hypothetical 2-methylthioadenine synthetase [Thermococcus
           onnurineus NA1]
 gi|212009665|gb|ACJ17047.1| Hypothetical 2-methylthioadenine synthetase [Thermococcus
           onnurineus NA1]
          Length = 425

 Score =  327 bits (838), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 121/446 (27%), Positives = 217/446 (48%), Gaps = 27/446 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +  V++YGC  N  D+  ME +    GYE V + + AD +V+NTC +++   + +   + 
Sbjct: 3   KVHVETYGCTRNKADAEIMEAILLRAGYELVETPESADYVVVNTCAVKDPTEKHMRERIK 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            + +             V+V GC+     + I    P V+ ++G ++  R+ E ++ A  
Sbjct: 63  ELLD---------SGKRVIVTGCLTHVNPDII---DPRVSGILGVKSIDRIAEAIDLAER 110

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
             ++V  +   E   ++L +       + GV   + I EGC   CT+C   + RG+  S 
Sbjct: 111 DGKLVSVEGWRERSLDKLGLPRLW---RSGVAFVVPISEGCLNACTYCATRFARGVLKSY 167

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
               VV   ++ +  G  EI L  ++     G  +       ++LL  ++ I+G  R+R 
Sbjct: 168 KPELVVKWVKEALARGYREIQLSSEDTG-CYGFDI---GTNLAELLDEITSIEGEFRIRV 223

Query: 266 TTSHPRD---MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
              +P       D LI+A+ D + +  +LHLPVQSG + +L+ M R +T  E+ +I++  
Sbjct: 224 GMMNPNHAIKFLDELIEAYQD-EKVYKFLHLPVQSGDNEVLRRMGRTYTVEEFEEIVNEF 282

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R   P + +++D IVGFPGET++ F+ T++LV ++   +    +YSPR GT  +   +Q+
Sbjct: 283 RRKIPGLNLNTDIIVGFPGETEEAFQNTVELVKRVRPDKINVSRYSPRPGTIAAKW-KQL 341

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
                 ER   L +   +     N   VG+ IEVLI   GK+ G    R+   + ++L+ 
Sbjct: 342 PGWKVKERSRLLHRLRLQIAYEINQNYVGREIEVLIHGEGKKGGVEG-RTFNYKDIILDG 400

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
                G++I  R+T    + L G ++
Sbjct: 401 GA--PGELINARVTWAGSTYLKGTVL 424


>gi|331698386|ref|YP_004334625.1| 30S ribosomal protein S12 methylthiotransferase rimO
           [Pseudonocardia dioxanivorans CB1190]
 gi|326953075|gb|AEA26772.1| Ribosomal protein S12 methylthiotransferase rimO [Pseudonocardia
           dioxanivorans CB1190]
          Length = 495

 Score =  327 bits (838), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 119/474 (25%), Positives = 195/474 (41%), Gaps = 40/474 (8%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDA-----DLIVLNTCHIREKAA 77
            P+R  + + GC  N  DS  +       G+E V +   +     D+IV+NTC   E+A 
Sbjct: 10  APRRAALLTLGCARNEVDSEELAGRLAGSGWELVEADPSSGGPAPDVIVVNTCGFVEQAK 69

Query: 78  EKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLP 137
           +     L    ++  +         VV  GC+A+  G E+    P  + V+G   Y  L 
Sbjct: 70  KDSIDTLLSASDVAQAT-----GAKVVAVGCLAERYGAELAESLPEADAVLGFDAYPELA 124

Query: 138 ELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNR---------------------KRGV 176
           E L     G       +   D+   L +                              G 
Sbjct: 125 ERLGEVLGGHAP--APHVPVDRRTLLPLTPVARPTAAADVSVPGHEWVPDLSRVRLSDGP 182

Query: 177 TAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR 236
            A L +  GCD+ C FC +P  RG  +SR  + V+ EA  L + GV E+ L+ +N  +  
Sbjct: 183 VANLKLASGCDRRCAFCAIPSFRGAFVSRPPADVLAEAAWLAEQGVRELVLVSENSTS-Y 241

Query: 237 GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQ 296
           GK L G      DLL  L+ + G+ R+R +   P +M   L+        + PY  L  Q
Sbjct: 242 GKDLPGGTRALVDLLPRLAAVPGIERVRASYLQPAEMRPDLVSVIATTPGIAPYFDLSFQ 301

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
            GS  +L+ M R     ++ ++ +RIR++ P+  I S+ IVGFPGET+DD       +  
Sbjct: 302 HGSAAVLRRMRRFGGRTDFLELCERIRALAPEAGIRSNVIVGFPGETEDDLAELEAFLTG 361

Query: 357 IGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEV 416
                   F YS   GT  +    ++D +    R+  +   + E      +  VG  + V
Sbjct: 362 ARLDAVGVFGYSDEDGTEAAGYDGKIDPDEVQARVSRISSLVDELVAQRAEDRVGSEVVV 421

Query: 417 LIEKHGKEKGKLVGR----SPWLQS--VVLNSKNHNIGDIIKVRITDVKISTLY 464
           L+E+   +  +  GR    +P +    VV        G++++  + D + + L 
Sbjct: 422 LVEQAEDDDFECTGRAAHQAPEVDGECVVERGSGLTAGELVRCVVVDTEGADLM 475


>gi|282877988|ref|ZP_06286797.1| MiaB-like protein [Prevotella buccalis ATCC 35310]
 gi|281299989|gb|EFA92349.1| MiaB-like protein [Prevotella buccalis ATCC 35310]
          Length = 453

 Score =  327 bits (838), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 121/439 (27%), Positives = 206/439 (46%), Gaps = 25/439 (5%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N  ++    +M    G   V+  + AD+ ++NTC + E A  K    + R+   
Sbjct: 16  TLGCKLNFSETSTFGEMLQELGVRTVDRGERADICLINTCSVTEVADHKCRQAIRRM--- 72

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA------- 143
               ++E     ++V GC AQ E E +  + P V++V+G      L + L  A       
Sbjct: 73  ----VRENPGAFIIVTGCYAQLESEAV-SKIPGVDLVLGSNEKAHLVQYLNDAWLHRNAL 127

Query: 144 -RFGKRVVDTDYSVED-KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
              G  V D  ++ +  K + +       ++      FL +Q+GC+ FCT+C +P+ RG 
Sbjct: 128 REQGDEVTDGLHAFQSVKTKDIKTFQPSCSKGNRTRYFLKVQDGCNYFCTYCTIPFARGF 187

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
             + S++ +V +A +  + G  EI L G N+    G+  +    TF DL+ +L +++G+ 
Sbjct: 188 SRNPSIASLVQQAEQAAEEGGKEIVLTGVNI----GEFGERTDETFLDLVKALDQVEGIR 243

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R R ++  P  M+D LI         MP+ H+P+QSGSD +LK M+R +    +   I  
Sbjct: 244 RFRISSLEPDLMADELIDYCAQSRAFMPHFHIPLQSGSDEVLKLMHRHYDTSLFADKIHH 303

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I+ V P   I  D +VG  GE  + F  + + +  +   Q   F YS R GT   ++   
Sbjct: 304 IKEVMPHAFIGVDVMVGCRGEKPEYFEESYEFIRSLDVTQLHVFPYSERPGTRALSIPYV 363

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           V E+ K  R   L +   E+  +F    VGQ  EVL EK  + +  + G +     V + 
Sbjct: 364 VSEHDKKLRSKRLLQLSDEKTHAFYAKYVGQEAEVLFEKANRGRA-MHGFTRNYIRVEMP 422

Query: 442 ---SKNHNIGDIIKVRITD 457
              +K      +I V++ D
Sbjct: 423 AALAKEEFDNQLITVKLGD 441


>gi|261403097|ref|YP_003247321.1| MiaB-like tRNA modifying enzyme [Methanocaldococcus vulcanius M7]
 gi|261370090|gb|ACX72839.1| MiaB-like tRNA modifying enzyme [Methanocaldococcus vulcanius M7]
          Length = 414

 Score =  327 bits (838), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 129/450 (28%), Positives = 227/450 (50%), Gaps = 43/450 (9%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ +V+ YGC +N  D+  +++    +G+E V+ +D AD+ V+NTC +R +   ++   +
Sbjct: 2   KKVYVEGYGCVLNSADTEIIKNALREEGFEIVDELDRADVAVINTCVVRLETENRMIYRI 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE-RA 143
             ++NL            VVVAGC+ +A  E++        + + P+  ++  ++L+   
Sbjct: 62  NELKNL---------GKDVVVAGCLPKALKEKVKGF-----LHIYPREAHKAGKILKIYI 107

Query: 144 RFGKRV--VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           + GKRV  ++ D S+  K + +            +   L I EGC   CT+C+V   RG 
Sbjct: 108 KSGKRVEGLEDDKSLHKKLDYI---------TSSLITPLPICEGCLGHCTYCIVKIARGN 158

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
            IS    ++V +A +LI  G   I +  Q+  A  G   +      ++LL  L  I+G  
Sbjct: 159 LISYPREKIVKKAEELIKKGTKCIFITAQDT-ACYGFDRNDN---LANLLNDLCNIEGDF 214

Query: 262 RLRYTTSHPR---DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
            +R    H +   ++ D LI+ +   D +  +LHLP+QSG D ILK M R +T  E+++I
Sbjct: 215 IMRVGMMHAKNVEEIIDELIEVY-KTDKVGKFLHLPLQSGDDEILKKMRRGYTVDEFKEI 273

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           ++  R    ++  ++D IVGFPGET++ F  T++++ ++        KYS R GT  + M
Sbjct: 274 VNEFRKKVKNLCFTTDIIVGFPGETEEQFENTLNILKELKPDYIHGAKYSQRKGTEAAKM 333

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSV 438
            +QVD  ++ +R   L K  RE     N   +G+ ++ LI + GK      G +   + V
Sbjct: 334 -KQVDTKIRKQRSEILDKLRRELSYINNKKYIGKKLKTLILEEGK------GYTENFKVV 386

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468
                  +IG+  KV+I D K   L G+++
Sbjct: 387 KFEGG--SIGNFKKVKIVDAKTFGLVGKII 414


>gi|298373586|ref|ZP_06983575.1| Fe-S oxidoreductase [Bacteroidetes oral taxon 274 str. F0058]
 gi|298274638|gb|EFI16190.1| Fe-S oxidoreductase [Bacteroidetes oral taxon 274 str. F0058]
          Length = 417

 Score =  327 bits (838), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 109/432 (25%), Positives = 199/432 (46%), Gaps = 16/432 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++    + GC++N  ++  +  +  + G+      + AD+ ++NTC + + A +K    +
Sbjct: 2   KKVTFYTLGCKLNFAETSYIGRLLVANGFSIAGKGEKADVCIVNTCSVTDTADKKCRQAI 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            +I +          +  V+V GC AQ    E+  +   V++V+G +  + + +++    
Sbjct: 62  HKISSA-------NPNAFVIVTGCYAQINPAEV-EQIEGVDLVLGAKEKFDILKIMHSLE 113

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
             ++      +          +    +R R    FL +Q+GC+ +CT+C +P+ RG   S
Sbjct: 114 SKEQFDRVQVANIRDNNFFEPIFSAGDRTR---YFLKVQDGCNYYCTYCTIPFARGKSRS 170

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
            S++  +D  R+ I  G  EI L G N+    G   +G    F DL+ ++ ++   VR R
Sbjct: 171 ASVAVTMDTIRRAIAEGAREIILTGVNI----GDFGNGSSERFIDLVRNIDDMTDEVRFR 226

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
            ++  P  + D +I+       + P+ H+P+QSGS+R+L+ M RR+T   + Q +  I+S
Sbjct: 227 ISSVEPNLLEDDIIRLIAHSRRIAPHFHIPLQSGSNRVLELMQRRYTREIFAQKVATIKS 286

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           + P   I  D IVG  GET D F  T+  + +  +++   F YS R GT   N+   V  
Sbjct: 287 LMPHAFIGVDVIVGMRGETPDMFDETVQFLAETPFSELHIFPYSEREGTRALNISPVVSV 346

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
             K  R   L +  +E    F  +  G    VL E   K+   + G +     V    ++
Sbjct: 347 QEKKRRSEILHRMSQEHVEEFYRSQKGLERTVLWE-TTKDPKIMSGYTENYIPVTAPLES 405

Query: 445 HNIGDIIKVRIT 456
             I    K+RI 
Sbjct: 406 DKINTFQKIRID 417


>gi|297569860|ref|YP_003691204.1| MiaB-like tRNA modifying enzyme [Desulfurivibrio alkaliphilus AHT2]
 gi|296925775|gb|ADH86585.1| MiaB-like tRNA modifying enzyme [Desulfurivibrio alkaliphilus AHT2]
          Length = 470

 Score =  326 bits (837), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 120/435 (27%), Positives = 198/435 (45%), Gaps = 17/435 (3%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
            +R  V + GC++N Y++          +  E V   + A++ V+NTC +  KA  +   
Sbjct: 19  KKRVAVTTLGCKVNQYETAAFLSELADCKEVEIVPFGEAAEVYVINTCAVTAKAGAQSRQ 78

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            + R            G   +VV GC AQ   +E+L  +     +VG      + E +  
Sbjct: 79  LIRRAAK--------RGGSRLVVTGCYAQVAPQEVLELTARPLCIVGNSHKNLVTEAVLA 130

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRK-RGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           A       D +  + D      +      R      A L +Q+GC + C++C+VP +RG 
Sbjct: 131 A----SPCDLEMYLADMAGCREVAPLVVRRGGSRTRAVLKVQDGCSQRCSYCIVPISRGP 186

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
             S +  +V+D+A      G  E+ L G ++    G  L         L   L+    L 
Sbjct: 187 SRSVTPERVLDQAEIYAGQGYREVVLTGIHLG-HYGLDLQPTLPLVGLLEKLLARRLPL- 244

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R R ++  PR++S  L++       L P+LH+P+QSG DRIL +MNR +   ++  +++R
Sbjct: 245 RYRLSSLEPREVSPELLELVAAEAALQPHLHIPLQSGDDRILAAMNRPYRRQDFAAVVNR 304

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
              V P  AI  D + GFPGE D  F  T+ L+ ++  +    F YSPR GTP + + +Q
Sbjct: 305 CAQVLPAAAIGVDVLAGFPGEDDAAFANTLALLKELPVSYLHVFPYSPRPGTPAAKLPDQ 364

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440
           V E VK  R   L+   R+++ +F    +  +  VL+E   ++  K L G +     V L
Sbjct: 365 VPEKVKQRRAARLRNLDRQKREAFYRRHLDTVRPVLVEGGDQDAAKALRGFTDNYIPVQL 424

Query: 441 NSKNHNIGDIIKVRI 455
                    +I+VR+
Sbjct: 425 PDGAARGNQVIRVRL 439


>gi|18409989|ref|NP_565035.1| radical SAM domain-containing protein / TRAM domain-containing
           protein [Arabidopsis thaliana]
 gi|12322201|gb|AAG51137.1|AC069273_8 unknown protein [Arabidopsis thaliana]
 gi|14194137|gb|AAK56263.1|AF367274_1 At1g72090/F28P5_4 [Arabidopsis thaliana]
 gi|27363418|gb|AAO11628.1| At1g72090/F28P5_4 [Arabidopsis thaliana]
 gi|332197151|gb|AEE35272.1| Methylthiotransferase [Arabidopsis thaliana]
          Length = 601

 Score =  326 bits (837), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 120/446 (26%), Positives = 205/446 (45%), Gaps = 24/446 (5%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           Q  ++K++GC  N  DS  M     + GY      ++ADL ++NTC ++  +   + + +
Sbjct: 64  QTIYIKTFGCSHNQSDSEYMAGQLSAFGYALTEVPEEADLWLINTCTVKSPSQSAMSTLI 123

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R R+ K           +V+AGCV Q   +  L+    V+VV G Q   R+ E++E   
Sbjct: 124 TRGRSGKKP---------LVIAGCVPQGSRD--LKELEGVSVV-GVQQIDRVVEIVEETL 171

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G  V           + L  +D    R+      L I  GC   CT+C   + RG   S
Sbjct: 172 KGHEVRLL------TRKTLPALDLPKVRRNNFIEILPINVGCLGACTYCKTKHARGHLGS 225

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
            ++  +V+  R +I  GV EI L  ++  A  G+ +        + +           LR
Sbjct: 226 YTVDSLVERVRTVISEGVKEIWLSSEDTGA-YGRDIGVNLPILLNAIVKELPSDQSTMLR 284

Query: 265 YTTSHPRDMSDCL--IKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
              ++P  + + L  I A      +  +LH+PVQSGSD +L +MNR +TA E+R ++D +
Sbjct: 285 IGMTNPPFILEHLKEIAAVLRHPCVYTFLHVPVQSGSDSVLTAMNREYTASEFRTVVDTL 344

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
             + P + I++D I GFPGETD+DF  T++L+    + Q    ++ PR GTP + M ++V
Sbjct: 345 TELVPGMQIATDIICGFPGETDEDFSQTVELIKDYKFPQVHISQFYPRPGTPAAKM-KKV 403

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
              +  +R   L      +  +       +   + I +   +   LVG +     V++  
Sbjct: 404 QSKIVKQRSRELTSVF--EAFAPYTGMECREERIWITEVATDGIHLVGHTKGYVQVLVTG 461

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
               +G     RIT V   +++GE++
Sbjct: 462 PESMLGTSAMARITSVGRWSVFGEVI 487


>gi|291003708|ref|ZP_06561681.1| hypothetical protein SeryN2_04222 [Saccharopolyspora erythraea NRRL
           2338]
          Length = 473

 Score =  326 bits (837), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 120/468 (25%), Positives = 205/468 (43%), Gaps = 47/468 (10%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           + + GC  N  DS  +      +G++ ++    AD++V+NTC   E A +     L    
Sbjct: 1   MVTLGCARNEVDSEELAGNLHQRGWDLIDDESSADVVVVNTCGFVESAKKDSVDTLLAAS 60

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
           +             VV  GC+A+  G E+    P  + V+G   Y  L E L+    G+ 
Sbjct: 61  D---------TGAKVVAVGCMAERYGAELAEHLPEADAVLGFDHYGNLAERLDDVLAGRA 111

Query: 149 VVDTDYSVEDKFERLSIVD-----------------GGYNRKRG---------VTAFLTI 182
           +    +  +D+ + L I                   G     RG           A L +
Sbjct: 112 I--QPHQPQDRRKMLPITPVARPAAAAASEVAVPGHGWVPSTRGIARRRLDDSPLAALKL 169

Query: 183 QEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG 242
             GCD+ C+FC +P  RG  +SR   +V+ EA  L + G  E+ L+ +N  +  GK L  
Sbjct: 170 ASGCDRRCSFCAIPSFRGSFLSRQPEEVLGEAAWLAEQGAKELFLVSENSTS-YGKDLS- 227

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
           +      LL  L+ I G+ R+R +   P +    L++A      + PY  L  Q  S+++
Sbjct: 228 DPRALETLLPRLAGIDGVDRVRVSYLQPAETRPGLVRAIATTPGVAPYFDLSFQHSSEKV 287

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           L+ M R  +   +  +I++IR + P+  I S+ IVGFPGET++DF    D + +      
Sbjct: 288 LRRMRRFGSTESFLALIEQIRELAPEAGIRSNVIVGFPGETEEDFEELQDFLTRARLDAV 347

Query: 363 FSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422
             F YS   GT  +    ++D +V A R+  +     E      +  VG  + VL+E+  
Sbjct: 348 GVFGYSDEDGTEAAGFDGKLDADVVAARVEQVSALADELVAQRAEDRVGTEVRVLVER-- 405

Query: 423 KEKGKLVGRS----PWLQS--VVLNSKNHNIGDIIKVRITDVKISTLY 464
            E G++ GR+    P +    VV+++    +G+++  R+   +   L 
Sbjct: 406 DEDGEVTGRAEHQGPEVDGECVVVDAGGAGVGEVVHCRVIASEGVDLV 453


>gi|146303440|ref|YP_001190756.1| RNA modification protein [Metallosphaera sedula DSM 5348]
 gi|145701690|gb|ABP94832.1| RNA modification enzyme, MiaB family [Metallosphaera sedula DSM
           5348]
          Length = 418

 Score =  326 bits (837), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 126/445 (28%), Positives = 218/445 (48%), Gaps = 30/445 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R + ++YGC +N  D+  M  +   + +E VNS + AD++V+NTC +R +  EK+   + 
Sbjct: 2   RIYFETYGCALNKGDTYSMMTLLKGRNHEIVNSEEQADVLVINTCAVRMETEEKMKKRIL 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +               +VVAGC+A AE   ++  +P  +++ GPQ+     ++++    
Sbjct: 62  ELSKTGKK---------LVVAGCLAGAEPGLVMSLAPQSSLI-GPQSIG---DVVKAVES 108

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            +R+V              +     +   G+ + + I +GC   C FC+    R    S 
Sbjct: 109 RERIVSL---------HGELPSVLPSVFEGLISVIPIADGCAGSCNFCITKLARKELRSY 159

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
               +V+ ARK I+ G  EI L GQ+  A  G  L G     +DL+  +S ++G   +R 
Sbjct: 160 PPRMIVETARKAIEKGAKEIELTGQDTAA-YGLDL-GRDIRLADLVGEVSSLEGDFMVRV 217

Query: 266 TTSHPRDMSDCLIKAHG--DLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
               P      L       D   +  + HLPVQSG+D++L++MNR++T  E+R+I+  IR
Sbjct: 218 GMMTPELAMRQLDDLLDAWDNPKVYKFFHLPVQSGNDQVLRAMNRKYTLDEFREIVREIR 277

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              P + I++D IVG PGE ++ F  T++L+ ++ + +     YS R  T  + M  QV 
Sbjct: 278 KRFPLVNITTDIIVGHPGEDENAFEDTLNLMKELRFERIHIAMYSLRPNTRSAMMT-QVP 336

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
             +K ERL        E     +   VG+ ++VL+ ++GK+  K +GR+     V++  K
Sbjct: 337 GPIKKERLKRAVTLYEELSREIHREYVGRKMKVLVLENGKDNTK-IGRTLNYIPVIV--K 393

Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468
           + ++G   +  ITD     L G +V
Sbjct: 394 DADLGKWYEAEITDSSFFDLRGSIV 418


>gi|89069057|ref|ZP_01156438.1| RNA modification enzyme, MiaB-family protein [Oceanicola granulosus
           HTCC2516]
 gi|89045426|gb|EAR51491.1| RNA modification enzyme, MiaB-family protein [Oceanicola granulosus
           HTCC2516]
          Length = 457

 Score =  326 bits (837), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 122/453 (26%), Positives = 190/453 (41%), Gaps = 35/453 (7%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
              + S GC   + DS R+     ++GY        AD +++NTC   + A  +    +G
Sbjct: 27  TIGMVSLGCPKALVDSERILTRLRAEGYAISPDYGGADAVIVNTCGFLDSAKAESLDAIG 86

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                         +  V+V GC+  AE E I    P V  V GP  Y ++ + +  A  
Sbjct: 87  EA---------LTENGRVIVTGCLG-AEPEYITGAHPRVLAVTGPHQYEQVLDAVHAA-- 134

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                       D F  L    G     R   ++L I EGC+  C FC++P  RG  +SR
Sbjct: 135 -------VPPSPDPFIDLLPASGVSLTPRHF-SYLKISEGCNHRCKFCIIPDMRGRLVSR 186

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-----GEKCTFSDLLYSLSEIKGL 260
               +V EA KL+ NGV E+ ++ Q+ +A  G  +      G +    DL   L ++   
Sbjct: 187 PAHAIVREAEKLVANGVRELLVISQDTSA-YGADIRFAEERGHRAHIDDLARDLGQLGAW 245

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
           VRL Y   +PR  +   + A G   +++PYL +P Q      LK M R     E    I 
Sbjct: 246 VRLHYVYPYPRVRNLIPLMAEG---LVLPYLDIPFQHAHPDTLKRMARPSAQTETLAEIA 302

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
             R + PDI + S FIVG+PGET+ +F+  +D +D     +   F+Y    G   +++  
Sbjct: 303 AWREICPDITLRSTFIVGYPGETEAEFQYLLDWMDAAQLDRVGCFQYENVAGARSNDLPG 362

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQII---EVLIEKHGKEKGKLVGRSPWLQS 437
            V E VK ER      K +    +   A VG         I+  G    +    +P +  
Sbjct: 363 HVPEEVKQERWERFMAKAQAISEAKLAAKVGTRQDVIVDDIDADGIATCRTKADAPEIDG 422

Query: 438 VVLNS---KNHNIGDIIKVRITDVKISTLYGEL 467
            +      +   +GDI+ V + +     L+G L
Sbjct: 423 NLFIDEGTEGLAVGDIVTVEVDEAGEYDLWGRL 455


>gi|260589077|ref|ZP_05854990.1| RNA modification enzyme, MiaB family [Blautia hansenii DSM 20583]
 gi|331082507|ref|ZP_08331632.1| MiaB-like tRNA modifying enzyme [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|260540497|gb|EEX21066.1| RNA modification enzyme, MiaB family [Blautia hansenii DSM 20583]
 gi|330400485|gb|EGG80115.1| MiaB-like tRNA modifying enzyme [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 434

 Score =  326 bits (837), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 121/431 (28%), Positives = 223/431 (51%), Gaps = 16/431 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + ++  + + GC++N Y+   M++M    GYE V     AD+ ++NTC +   A  K   
Sbjct: 1   MKKKVALHNLGCKVNAYELEAMQEMLEKAGYEIVPFAPGADVYIINTCTVTNIADRKSRQ 60

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            L + R       K   + +V+ AGC  QA  + +      +++V+G      L  +LE 
Sbjct: 61  MLHKAR-------KMNPEAIVIAAGCYVQA-QKNMENIDDAIDIVLGNNRKQDLLFVLEN 112

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            + G        S++   E   +     +      A+L +Q+GC++FC++C++PY RG  
Sbjct: 113 YKKGSGQEKDLISLDKPVEYEEL--QLSSTGEHTRAYLKVQDGCNQFCSYCIIPYVRGRV 170

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR   +V++E  +L  NG  E  L G +++++     D       +L+ ++ EI+G+ R
Sbjct: 171 RSRRKEEVLEEVLRLTKNGYQEFVLTGIHLSSYGVDCED----NLLELIKAVHEIEGVKR 226

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R  +  PR +++   +A G++  + P+ HL +QSG D  L  MNR+++A EY +    +
Sbjct: 227 IRLGSLEPRIITEEFAQALGNMPKICPHFHLSLQSGCDATLMRMNRKYSAEEYLEGCRLL 286

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R    + A+++D IVGFP E++++F  +  +++ + + +   FKYS R GT  + M  QV
Sbjct: 287 RKYFKNPALTTDVIVGFPQESEEEFEQSYKMIESVEFYETHIFKYSRRQGTRAAEMEGQV 346

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG--KLVGRSPWLQSVVL 440
           DE VK ER   L +  +E++  + ++ +GQ +E+L E+  K +G    +G +     V  
Sbjct: 347 DEAVKTERSHKLIQLGKEKKQKYMESFLGQQVEILFEETAKIQGEEYWIGYTKEYLKVAA 406

Query: 441 NSKNHNIGDII 451
            SK +    I+
Sbjct: 407 KSKENLENRIV 417


>gi|163744051|ref|ZP_02151418.1| RNA modification enzyme, MiaB-family protein [Phaeobacter
           gallaeciensis 2.10]
 gi|161382667|gb|EDQ07069.1| RNA modification enzyme, MiaB-family protein [Phaeobacter
           gallaeciensis 2.10]
          Length = 475

 Score =  326 bits (837), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 119/456 (26%), Positives = 197/456 (43%), Gaps = 41/456 (8%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           + S GC   + DS R+     ++GY        AD +++NTC   + A  +    +G   
Sbjct: 36  MVSLGCPKALVDSERILTRLRAEGYGVSPDYSGADAVIVNTCGFLDSAKAESLEAIGEA- 94

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
            LK +         V+V GC+  AE + I    P +  V GP  Y ++ + +  A     
Sbjct: 95  -LKENGK-------VIVTGCLG-AEPDYIRAHHPRILAVTGPHQYEQVLDAVHAA----- 140

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
                 S     + L     G        ++L I EGC+  C FC++P  RG   SR   
Sbjct: 141 ---VPPSPNPYVDLLPAA--GVKLTPRHFSYLKISEGCNHKCKFCIIPDMRGKLASRPAH 195

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAW-------RGKGLDGE-KCTFSDLLYSLSEIKG- 259
            V+ EA KL+D GV E+ ++ Q+ +A+            DGE +    DL   L  +   
Sbjct: 196 AVLREAEKLVDAGVRELLVISQDTSAYGLDRKYDVNPWKDGEVRSHIQDLSRELGRLAPA 255

Query: 260 ---LVRLRYTTSHPRDMSDCLIKAHGDLDV-LMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
               VRL Y   +P      LI    D D  L+PYL +P Q     +L+ M R   A + 
Sbjct: 256 DELWVRLHYVYPYPHV--RELIPLMADPDNALLPYLDIPFQHAHPDVLRRMARPAAAAKT 313

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
              I+  R+  PDI + S FIVG+PGET+ +F+  +D +D+    +   FKY    G   
Sbjct: 314 LDEINAWRATCPDITLRSTFIVGYPGETEAEFQHLLDWMDEAQLDRVGCFKYENVDGARS 373

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK---GKLVGRS 432
           +++ + V E VK +R     +K +    +   A VGQ + V+++   ++     +    +
Sbjct: 374 NDLADHVPEEVKQDRWDRFMEKAQAISEAKLAAKVGQTMLVIVDDIDEDGIATCRTKADA 433

Query: 433 PWLQSVVLNS---KNHNIGDIIKVRITDVKISTLYG 465
           P +   +          +G+++ V + +     L+G
Sbjct: 434 PEIDGNLFIDEGTDGLQVGELVTVEVDEAGEYDLWG 469


>gi|182435562|ref|YP_001823281.1| hypothetical protein SGR_1769 [Streptomyces griseus subsp. griseus
           NBRC 13350]
 gi|326776196|ref|ZP_08235461.1| Ribosomal protein S12 methylthiotransferase rimO [Streptomyces cf.
           griseus XylebKG-1]
 gi|238066607|sp|B1VXY2|RIMO_STRGG RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|178464078|dbj|BAG18598.1| conserved hypothetical protein [Streptomyces griseus subsp. griseus
           NBRC 13350]
 gi|326656529|gb|EGE41375.1| Ribosomal protein S12 methylthiotransferase rimO [Streptomyces cf.
           griseus XylebKG-1]
          Length = 493

 Score =  326 bits (837), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 126/486 (25%), Positives = 204/486 (41%), Gaps = 50/486 (10%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +   + + GC  N  DS  +     + G++ V    DAD+ V+NTC   E A +     L
Sbjct: 5   RTVALVTLGCARNEVDSEELAGRLAADGWDLVEDASDADVAVVNTCGFVEAAKKDSVDAL 64

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER-- 142
               +LK+     G    VV  GC+A+  G+++    P  + V+G   Y  + + L+   
Sbjct: 65  LEANDLKD----HGRTQAVVAVGCMAERYGKDLAEALPEADGVLGFDDYADISDRLQTIL 120

Query: 143 -----------------------------ARFGKRVVDTDYSVEDKFERLSIVDGGYNRK 173
                                        A  G        + ED  E ++ V G     
Sbjct: 121 NGGIHASHTPRDRRKLLPISPAERQDTAVALPGHAQEAPAPAPEDLPEGVAPVSGPRAPL 180

Query: 174 RG-----VTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLL 228
           R        A + +  GCD+ C+FC +P  RG  ISR  S V+ E R L + GV E+ L+
Sbjct: 181 RRRLGTSPVASVKLASGCDRRCSFCAIPSFRGSFISRRPSDVLQETRWLAEQGVKEVMLV 240

Query: 229 GQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLM 288
            +N N   GK L G+      LL  L+++ G+ R+R +   P +M   LI        + 
Sbjct: 241 SEN-NTSYGKDL-GDIRLLETLLPELADVDGIERIRVSYLQPAEMRPGLIDVLTSTPKVA 298

Query: 289 PYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFR 348
           PY  L  Q  +  +L++M R      + +++D IRS  P     S+FIVGFPGET+ D  
Sbjct: 299 PYFDLSFQHSAPGVLRAMRRFGDTDRFLELLDTIRSKAPQAGARSNFIVGFPGETEADLA 358

Query: 349 ATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDA 408
                +          F YS   GT       ++D +  AERL  + +   E      + 
Sbjct: 359 ELERFLTGARLDAIGVFGYSDEEGTEAVGYENKLDADTIAERLAHISQLAEELTSQRAEE 418

Query: 409 CVGQIIEVLIEK-HGKEKGKL-VGR----SPWLQS-VVLNSKNHNI-GDIIKVRITDVKI 460
            VG+ ++VL+E    +E G++ +GR    +P     VV  ++   + G +++ +    + 
Sbjct: 419 RVGETLQVLVESVESEEDGEVAIGRAAHQAPETDGQVVFTTREGLVPGLMVEAKAVGTEG 478

Query: 461 STLYGE 466
             L  E
Sbjct: 479 VDLVAE 484


>gi|116254271|ref|YP_770109.1| methylase [Rhizobium leguminosarum bv. viciae 3841]
 gi|115258919|emb|CAK10028.1| putative methylase [Rhizobium leguminosarum bv. viciae 3841]
          Length = 424

 Score =  326 bits (836), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 120/436 (27%), Positives = 191/436 (43%), Gaps = 28/436 (6%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V ++GC++N Y+S  M+      G          + I++NTC +  +A  +    +    
Sbjct: 6   VITFGCRLNTYESEVMKAQAEKAGLN--------NAILVNTCAVTGEAVRQARQAI---- 53

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
                  ++     ++VAGC AQ E +     +  V+ V+G +             FG  
Sbjct: 54  ---RRARRDHPHARIIVAGCAAQTEKQTFAAMA-EVDAVLGNEEKLTSASYRSLPDFGVS 109

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRG-VTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
             +    V D     +          G V AF+ +Q GCD  CTFC++PY RG   S  +
Sbjct: 110 A-EEKLRVNDIMSVKATAPQMVRHIDGHVRAFIQVQNGCDHRCTFCIIPYGRGNSRSVPM 168

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
             VVD+A KL+D G  EI L G +  +  G  L G           L ++  + RLR ++
Sbjct: 169 GAVVDQASKLVDGGYREIVLTGVDATS-YGGDLPGAPTLGLLAKTLLKQLPDIRRLRLSS 227

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
               +    L+    D    MP+LHL +Q G D ILK M RRH   +  + I+  R +RP
Sbjct: 228 IDSIEADAHLMDLIADEPRFMPHLHLSLQHGDDMILKRMKRRHLRADALRFIEDARRLRP 287

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
           +++  +D I GFP ET++ F   + L ++ G A    F YSPR GTP + M  Q+D ++ 
Sbjct: 288 EMSFGADMIAGFPTETEEMFENAVRLAEEAGIAHLHVFPYSPRPGTPAARMP-QLDRSLV 346

Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNI 447
            +R   L+        S  D  +G    +L+E +G      +  +     V   +     
Sbjct: 347 KDRAARLRAAGHMLHQSHLDRMIGTRQWLLVENNG------LAHTENFTLV--AAPGLRP 398

Query: 448 GDIIKVRITDVKISTL 463
           G+++ V IT      L
Sbjct: 399 GELVPVTITGHNGKHL 414


>gi|303233275|ref|ZP_07319947.1| ribosomal protein S12 methylthiotransferase RimO [Atopobium vaginae
           PB189-T1-4]
 gi|302480665|gb|EFL43753.1| ribosomal protein S12 methylthiotransferase RimO [Atopobium vaginae
           PB189-T1-4]
          Length = 532

 Score =  326 bits (836), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 113/449 (25%), Positives = 191/449 (42%), Gaps = 21/449 (4%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
             + GC  N  D+ RM  +  + G+   ++ DDAD++++NTC     A  +       + 
Sbjct: 82  FVTLGCAKNQVDTDRMRALLLASGFREAHNTDDADVVLINTCSFLATATSESIDVTLDLA 141

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
             + + I       +++ GCV    G+ +    P V   V       +  ++        
Sbjct: 142 QEQQNGITTCP---IIMCGCVPARYGKALTGELPEVAAFVKANDEDGIIGVVCD------ 192

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           V+  ++      E L         K   +AF+ I EGC + C FC +P+ RG   SR   
Sbjct: 193 VLGLEHPSFSFVEEL--TRRALRTKEATSAFVKISEGCSRMCAFCAIPHIRGPYASRPPQ 250

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL-VRLRYTT 267
            ++ E   L+D G+ EI L+GQ+   W G      K     L      ++G    +R   
Sbjct: 251 DILAEVDMLVDAGIHEIILIGQDTGIW-GCDFKEPKTLAWLLQQVAHHVRGKQCWIRVLY 309

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
             P  M+  LI    D   ++PY+ +P+Q  S+++LK M R  +A E  ++   +R   P
Sbjct: 310 LQPEGMTPELISTIRDTPEVLPYIDIPIQHCSEQVLKRMGRTGSAQELHELFATLRREIP 369

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
           ++ + +  +VGFPGET  +    +D      +     F YS   GT  + M +QV    K
Sbjct: 370 NMVLRTTGMVGFPGETAQEADELVDFFKAEEFDYMSVFSYSQEDGTTAARMRDQVSAQTK 429

Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG---KLVGR----SPWLQS-VV 439
            ER   L+    E   S     VG++++V+I+          +L+G     +P     V 
Sbjct: 430 LERTQRLRDVAEELGFSATAKHVGEVVDVIIDSKDYNDDGSFELIGHAWFQAPDCDGAVH 489

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
           L +    IGDI++VR+       L   L+
Sbjct: 490 LPADAGEIGDIVRVRLVSSYCYELSATLL 518


>gi|300788129|ref|YP_003768420.1| 2-methylthioadenine synthetase [Amycolatopsis mediterranei U32]
 gi|299797643|gb|ADJ48018.1| 2-methylthioadenine synthetase [Amycolatopsis mediterranei U32]
          Length = 478

 Score =  326 bits (836), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 117/483 (24%), Positives = 199/483 (41%), Gaps = 45/483 (9%)

Query: 13  MVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHI 72
           M S   D    P+R  + + GC  N  DS  +     + G+E     +D+D++V+NTC  
Sbjct: 1   MPSPATDPA-APRRVSLLTLGCARNEVDSEELAGRLAAGGWELAADPEDSDVVVVNTCGF 59

Query: 73  REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT 132
            E A +     L    +             VV  GC+A+  G E+    P  + V+G   
Sbjct: 60  VESAKKDSVDTLLAASDTGKK---------VVAVGCMAERYGHELADSLPEADAVLGFDH 110

Query: 133 YYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYN--------------------- 171
           Y  L   L+    G+++    ++  D+ + L I                           
Sbjct: 111 YADLSARLDDVVAGRKI--ASHTPGDRRKLLPISPVQRPAAAETVEVPGHAQHGWGPRVL 168

Query: 172 RKR---GVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLL 228
           R R      A L I  GCD+ C+FC +P  RG  +SR   ++V EA  L ++GV E+ L+
Sbjct: 169 RTRLDDAPVAALKIASGCDRRCSFCAIPSFRGSFVSRQPDEIVAEAMWLAEHGVKELFLV 228

Query: 229 GQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLM 288
            +N  ++              LL  L+EI G+ R+R +   P +    L+KA      + 
Sbjct: 229 SENSTSYGKDFGRDGATALERLLPRLAEIDGIERVRVSYLQPAETRPQLVKAIATTPGVA 288

Query: 289 PYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFR 348
            Y  L  Q  S+++L+ M R  +   +  + ++IR   P+  I ++ IVGFPGET+ D  
Sbjct: 289 EYFDLSFQHSSEQVLRRMRRFGSTDSFLALCEQIREYAPEAGIRTNVIVGFPGETEHDLA 348

Query: 349 ATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDA 408
                +          F YS   GT       ++D      R+  +   + E      + 
Sbjct: 349 ELERFLTGARLDAVGVFGYSDEDGTEAETFDGKLDPEEVGRRVTRISALVEELTTQRAED 408

Query: 409 CVGQIIEVLIEKHGKEKGKLVGR----SPWLQS--VVLNSKN-HNIGDIIKVRITDVKIS 461
            +G  ++VL+E    + G+L GR    +P +    ++L++     +GD ++  + D    
Sbjct: 409 RIGTFVDVLVE--LDDDGELTGRAAHQAPEVDGECIILDAPEKVQVGDFLRCEVVDSAGV 466

Query: 462 TLY 464
            L 
Sbjct: 467 DLI 469


>gi|298373642|ref|ZP_06983631.1| 2-methylthioadenine synthetase [Bacteroidetes oral taxon 274 str.
           F0058]
 gi|298274694|gb|EFI16246.1| 2-methylthioadenine synthetase [Bacteroidetes oral taxon 274 str.
           F0058]
          Length = 431

 Score =  326 bits (836), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 117/449 (26%), Positives = 208/449 (46%), Gaps = 34/449 (7%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDD--ADLIVLNTCHIREKAAEKVYSFLGR 86
           V + GC  N+ DS R+   F   G+   +       +++V+NTC     A E+  + +  
Sbjct: 8   VITLGCSKNLVDSERLMRQFAYNGFLTRHEPRSVGGEIVVVNTCGFIGSAKEESINTILS 67

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           +   K  R        ++V GC+++   ++++R  P V+   G   + ++          
Sbjct: 68  LIEAKKKRK----IGKLIVMGCLSERYRDDLIRELPEVDRFYGKFDWKQI---------- 113

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
             + D   S     E   ++           A++ I EGC++ C++C +P   G   SRS
Sbjct: 114 --ISDIGCSYNKLLENERLI-----TTPSHLAYVKIAEGCNRKCSYCAIPIITGRHRSRS 166

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
           +  +  E R L+  GV E  L+ Q++  + G+ L   K + + L+  L++I G+  LR  
Sbjct: 167 IEDIEHEIRSLVRGGVKEFNLIAQDLT-YYGRDLY-RKPSIARLVDRLAKIDGVEWLRLH 224

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
            ++P      L  A  D   +  YL + +Q  SD +L+ M R  T  E   +I  IR   
Sbjct: 225 YAYPAHFPKDLPAAIADHPNVCNYLDMALQHISDNMLRKMRRNITKAETIDLIADIRRQV 284

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG-SNMLEQVDEN 385
           PDI + +  ++G P E ++DF    + V+ + + +  +F YS   GT    +  +++  +
Sbjct: 285 PDIHLRTTLLLGHPHEEEEDFEELKEFVETMRFERLGAFAYSHEEGTFADRHYRDEIPFD 344

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVLN 441
           VK  RL  +          +N   VGQ++ VLI+K  KE+   VGR+    P +   VL 
Sbjct: 345 VKNRRLSEIMDIQEHIAEQYNARKVGQVLRVLIDK--KEEPYYVGRTEYDSPEVDGEVLI 402

Query: 442 SKNHN--IGDIIKVRITDVKISTLYGELV 468
           + +H   +G+   V+ITD +   L+GE+V
Sbjct: 403 ADSHKLRVGNFYDVKITDSQAFDLFGEVV 431


>gi|282862264|ref|ZP_06271326.1| MiaB-like tRNA modifying enzyme YliG [Streptomyces sp. ACTE]
 gi|282562603|gb|EFB68143.1| MiaB-like tRNA modifying enzyme YliG [Streptomyces sp. ACTE]
          Length = 492

 Score =  326 bits (836), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 123/487 (25%), Positives = 203/487 (41%), Gaps = 53/487 (10%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +   + + GC  N  DS  +     + G++ V    DAD+ V+NTC   E A +     L
Sbjct: 5   RTVALVTLGCARNEVDSEELAGRLAADGWDLVEDASDADVAVVNTCGFVEAAKKDSVDAL 64

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
               +LK+     G    VV  GC+A+  G+++    P  + V+G   Y  + + L+   
Sbjct: 65  LEANDLKD----HGRTQAVVAVGCMAERYGKDLAEALPEADGVLGFDDYADISDRLQTIL 120

Query: 145 FGKRVVDTDYSVEDKFERLSI-----------------------------------VDGG 169
            G   +   ++  D+ + L I                                       
Sbjct: 121 NGG--IHASHTPRDRRKLLPISPAERQDTAVALPGHAQEIAPAPADLPEGVAPVSGPRAP 178

Query: 170 YNRKRG--VTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITL 227
             R+ G    A + +  GCD+ C+FC +P  RG  ISR  S V+ E R L + GV E+ L
Sbjct: 179 LRRRLGTSPVASVKLASGCDRRCSFCAIPSFRGSFISRRPSDVLGETRWLAEQGVKEVML 238

Query: 228 LGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL 287
           + +N N   GK L G+      LL  L+++ G+ R+R +   P +M   LI        +
Sbjct: 239 VSEN-NTSYGKDL-GDIRLLETLLPELADVDGIERIRVSYLQPAEMRPGLIDVLTSTPKV 296

Query: 288 MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDF 347
            PY  L  Q  +  +L++M R      + +++D IR   P     S+FIVGFPGET+ D 
Sbjct: 297 APYFDLSFQHSAPGVLRAMRRFGDTDRFLELLDTIRGKAPQAGARSNFIVGFPGETEADL 356

Query: 348 RATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFND 407
                 +          F YS   GT       ++D +V AERL  + +   E      +
Sbjct: 357 AELERFLTGARLDAIGVFGYSDEEGTEAVGYENKLDADVIAERLAHISQLAEELTSQRAE 416

Query: 408 ACVGQIIEVLIE--KHGKEKGKLVGR----SPWLQS-VVLNSKNHNI-GDIIKVRITDVK 459
             VG+ ++VL+E  +  ++    VGR    +P     VV  ++   + G +++ +    +
Sbjct: 417 ERVGETLQVLVESVESDEDGPVAVGRAAHQAPETDGQVVFTTREGLVPGLMVEAKAVGTE 476

Query: 460 ISTLYGE 466
              L  E
Sbjct: 477 GVDLVAE 483


>gi|238066633|sp|Q3J3Y8|RIMO_RHOS4 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
          Length = 455

 Score =  326 bits (836), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 117/448 (26%), Positives = 191/448 (42%), Gaps = 28/448 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
              + S GC   + DS R+     ++GY        AD +++NTC   + A  +    +G
Sbjct: 31  TIGMVSLGCPKALVDSERILTRLRAEGYAISPDYAGADAVIVNTCGFLDSAKVESLEAIG 90

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                         +  V+V GC+  AE + I    P V  V GP  Y ++ + +  A  
Sbjct: 91  EALR---------ENGRVIVTGCLG-AEPDYITGAHPKVLAVTGPHQYEQVLDAVHGA-- 138

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                       D F  L    G     R   ++L I EGC+  C FC++P  RG   SR
Sbjct: 139 -------VPPAPDPFVDLLPATGVRLTPRHF-SYLKISEGCNHTCRFCIIPDMRGRLASR 190

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
               V+ EA KL++ GV E+ ++ Q+ +A+       EK     L   L  +   VRL Y
Sbjct: 191 PERAVLREAEKLVEAGVRELLVISQDTSAYGTDWKGPEKFPILPLARELGRLGAWVRLHY 250

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
              +P      LI    +  +++PYL +P Q     +LK M R   A      I   R  
Sbjct: 251 VYPYPHV--RELIPLMAE-GLVLPYLDIPFQHAHPEVLKRMARPAAAARTLDEIAAWRRD 307

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P+IA+ S FIVG+PGET+ +F+  +D +D+    +   F+Y    G   + + + V   
Sbjct: 308 CPEIALRSTFIVGYPGETEAEFQTLLDWLDEAQLDRVGCFQYENVAGARSNALPDHVAPE 367

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG--KLVGRSPWLQSVVLNSK 443
           VK ER     +K +        A VG+ IEV++++  ++    +    +P +   +   +
Sbjct: 368 VKQERWDRFMEKAQAISEVKLAAKVGRRIEVIVDEVDEDGATCRTKADAPEIDGNLFIDE 427

Query: 444 NHN---IGDIIKVRITDVKISTLYGELV 468
                  GDI+ V + +     ++G  V
Sbjct: 428 GFRGLAPGDILTVEVEEAGEYDIWGRPV 455


>gi|153813388|ref|ZP_01966056.1| hypothetical protein RUMOBE_03807 [Ruminococcus obeum ATCC 29174]
 gi|149830565|gb|EDM85656.1| hypothetical protein RUMOBE_03807 [Ruminococcus obeum ATCC 29174]
          Length = 321

 Score =  326 bits (836), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 126/325 (38%), Positives = 192/325 (59%), Gaps = 8/325 (2%)

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           +  +++VD     +   E L        R     + + I  GC+ FC++C+VPY RG E 
Sbjct: 3   QSEQQIVDIWEGTDQIVEDLPT-----ERNYTFKSGVNIMFGCNNFCSYCIVPYVRGRER 57

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR    +V E ++L+ +GV E+ LLGQNVN+  GK L+    TF+ LL  L +++GL R+
Sbjct: 58  SREPEAIVKEVKRLVADGVSEVMLLGQNVNS-YGKTLE-HPVTFAQLLEMLEDVEGLKRI 115

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+ TSHP+D+SD LI+       +  +LHLP+QSGS RILK+MNRR+   +Y  ++D+IR
Sbjct: 116 RFMTSHPKDLSDELIETMAKSKKICHHLHLPLQSGSSRILKAMNRRYDKEKYLNLVDKIR 175

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           +  PDI++++D IVGFPGET++DF  T+D+V K GY  AF+F YS R GTP + M EQ+ 
Sbjct: 176 TAIPDISLTTDIIVGFPGETEEDFEETLDVVSKCGYDTAFTFLYSRRSGTPAAEM-EQIP 234

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
           ++V  ER   L   ++++    +    G + EVL+E+  +EKG   GR+ +   V     
Sbjct: 235 QDVAKERFNRLLALVQQEGRIRSSRFEGSVQEVLVEEESREKGIFTGRTEYNLLVHFPGT 294

Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468
              +G  +KV + +       G LV
Sbjct: 295 ADLLGKYVKVSLDECHGFYYMGSLV 319


>gi|212691074|ref|ZP_03299202.1| hypothetical protein BACDOR_00564 [Bacteroides dorei DSM 17855]
 gi|237712425|ref|ZP_04542906.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|237726616|ref|ZP_04557097.1| conserved hypothetical protein [Bacteroides sp. D4]
 gi|265752128|ref|ZP_06087921.1| MiaB-like tRNA modifying enzyme [Bacteroides sp. 3_1_33FAA]
 gi|212666306|gb|EEB26878.1| hypothetical protein BACDOR_00564 [Bacteroides dorei DSM 17855]
 gi|229435142|gb|EEO45219.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4]
 gi|229453746|gb|EEO59467.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|263236920|gb|EEZ22390.1| MiaB-like tRNA modifying enzyme [Bacteroides sp. 3_1_33FAA]
          Length = 438

 Score =  326 bits (836), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 112/424 (26%), Positives = 193/424 (45%), Gaps = 17/424 (4%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N  ++  +       G       + AD+ V+NTC + E A +K    + R+   
Sbjct: 16  TLGCKLNFSETSTIGKTLKEAGIRTARKGEKADICVINTCSVTEVADKKCRQAIHRL--- 72

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               +K+     VVV GC AQ + +++      V+VV+G +    L   L       +  
Sbjct: 73  ----VKQHPGAYVVVTGCYAQLKPDQVAN-IEGVDVVLGAEQKGELMNYLGNLEKHPQGE 127

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
               + +D            +R      FL +Q+GCD FC++C +P+ RG   +  + ++
Sbjct: 128 AITTAAKDIRSFSP----SCSRGDRTRYFLKVQDGCDYFCSYCTIPFARGRSRNGRIEEI 183

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270
           V++AR+    G  EI + G N+    G        +F DL+ +L ++ G+ R R ++  P
Sbjct: 184 VEQARQAAAEGGKEIVITGVNI----GDFGKTTGESFFDLVKALDQVAGIERYRISSIEP 239

Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330
             ++D +I+        MP+ H+P+QSGSD +LK M RR+    +   I +IR + P+  
Sbjct: 240 NLLTDEIIEYVSRSRAFMPHFHIPLQSGSDDVLKLMRRRYDTALFASKIRKIREIMPNAF 299

Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER 390
           I  D IVG  GET++ F      ++ +   Q   F YS R GT    +   V    K  R
Sbjct: 300 IGVDVIVGTRGETEEYFEDAYHFIEGLDVTQLHVFTYSERPGTQALKIEYVVSPEEKHRR 359

Query: 391 LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDI 450
              L     E+  +F  + +G+   VL+EK  K    + G +     V ++  +     +
Sbjct: 360 SQRLLVLSDEKTKAFYTSHIGKEAWVLMEK-SKVGTPMHGFTDNYIRVEMDHDDQLDNQL 418

Query: 451 IKVR 454
           I+VR
Sbjct: 419 IRVR 422


>gi|160942971|ref|ZP_02090209.1| hypothetical protein FAEPRAM212_00448 [Faecalibacterium prausnitzii
           M21/2]
 gi|158445665|gb|EDP22668.1| hypothetical protein FAEPRAM212_00448 [Faecalibacterium prausnitzii
           M21/2]
          Length = 431

 Score =  326 bits (836), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 114/448 (25%), Positives = 210/448 (46%), Gaps = 28/448 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R    + GC++N+ ++  +E +F + G+      + AD+ ++N+C +     +K   +L 
Sbjct: 2   RVCFYTLGCKVNLNETGALEQLFRANGFTIAQEGEAADVFIVNSCTVTNFGDQKSRKWLR 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R +       +E    + V+ GC  QA  EE  +     ++V G      + E +++   
Sbjct: 62  RKK-------RENPGAVTVLTGCYPQAFPEEAAQFM-EADLVCGNGDRKAILENVQKLLD 113

Query: 146 GKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           G    V    +   ++FE L +       +    AF+ +++GC++ C +CV+P  RG   
Sbjct: 114 GHERIVAIAPHQRGEQFEELPV----ERFETHTRAFIKVEDGCNRQCAYCVIPRARGPVR 169

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR+   ++ E  +L   G  E+ L   ++ ++   GLD       +L+   +++ G+ R+
Sbjct: 170 SRAEESILAELHQLAAAGYREVVLSAISLPSY---GLDTG-TNLVELVEKCAQVPGIERI 225

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R  +  P  ++   I     +D L P  HL +QSG    L+ M R +TA +Y Q++++IR
Sbjct: 226 RLGSLDPDMLTPEFISRLAAVDKLCPQFHLSLQSGCTATLRRMRRVYTAQQYAQVVEQIR 285

Query: 324 SV---RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           +    RP ++ ++D I GFPGET ++F  +   + KIG+ +   F YS R GTP  +  +
Sbjct: 286 AAYGSRP-VSFTTDCICGFPGETAENFEESCAFLKKIGFLKVHVFPYSRRSGTPAYDFPD 344

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440
           Q+ E  K ER   +     + +     A  G   EVL+E          G +     VV+
Sbjct: 345 QIHEREKQERSRRMNAVAEQVRCEALAAFEGTEDEVLLETPL-SGTLFTGYTRLYIPVVV 403

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
           ++     G I++V++         GE V
Sbjct: 404 SAPGCESGQIVRVKL---GRYD--GERV 426


>gi|317485886|ref|ZP_07944746.1| MiaB-like tRNA modifying enzyme YliG [Bilophila wadsworthia 3_1_6]
 gi|316922860|gb|EFV44086.1| MiaB-like tRNA modifying enzyme YliG [Bilophila wadsworthia 3_1_6]
          Length = 433

 Score =  326 bits (836), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 119/448 (26%), Positives = 193/448 (43%), Gaps = 30/448 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R +  S GC  N  D+ R+           V S D+A+L+ +NTC   + A E+    + 
Sbjct: 6   RCYSTSLGCPKNRVDTERLLGSLGVA-LVPVESPDEAELVFINTCAFIQPATEESVRTIA 64

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEG-EEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           +         K     L+ VAGC+      E++    P V++ +        P +L R  
Sbjct: 65  QAIADIEELPK---RPLLAVAGCLVGRYHAEDLAPELPEVDLWLDNSDLEAWPAMLARKL 121

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
                                V G         A+L I +GC   C+FC +P  RG   S
Sbjct: 122 GLPE---------------PTVPGRILSTGPSYAWLKISDGCRHACSFCAIPNIRGGHRS 166

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
                +V EAR L+D GV E+ L+ Q++  W G  L+G K     LL  L  ++GL RLR
Sbjct: 167 HCKDMIVREARALLDQGVKELNLVAQDLTEW-GCDLNG-KQDLRTLLDGLLPLQGLERLR 224

Query: 265 YTTSHPRDMSDCLIKAHGDLDV-LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
               +P  M+  ++K   +     +PY  +PVQ     +L  M R   A   R+ IDRIR
Sbjct: 225 LMYLYPAGMTHEMLKYLREAGKPFVPYFDVPVQHSHPDVLSRMGRPF-ARNPREAIDRIR 283

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           +V P+ A+ +  +VGFPGET++ F    + ++++ +     F Y    GTP + M +QV+
Sbjct: 284 NVFPEAALRTSIMVGFPGETEEHFEHLREFIEEVRFQHLGVFAYRAEEGTPAAAMPDQVE 343

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGR----SPWLQS- 437
           + VK  R   L +   +    +     G  + +L++  H +  G   GR    +P +   
Sbjct: 344 DRVKEWRRDLLMEAQADISAEWLSRFEGDRLPILVDAPHPEWPGLHTGRAWFQAPEIDGM 403

Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYG 465
           V ++      G ++   I + +   L  
Sbjct: 404 VYISGPGVEPGALVDADIVECRDYDLVA 431


>gi|163816750|ref|ZP_02208113.1| hypothetical protein COPEUT_02940 [Coprococcus eutactus ATCC 27759]
 gi|158448007|gb|EDP25002.1| hypothetical protein COPEUT_02940 [Coprococcus eutactus ATCC 27759]
          Length = 450

 Score =  326 bits (835), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 119/450 (26%), Positives = 222/450 (49%), Gaps = 34/450 (7%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +     + GC++N  ++  M DM  + G + V+  + AD+ ++NTC +   A +K    L
Sbjct: 5   KSVAATTLGCKVNQAETDSMLDMLSAAGADIVDFEEKADIYIVNTCSVTNIADKKSRQML 64

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER-- 142
            R +       K   + +V+ AGC  Q   +E+L +   V++V+       + +++    
Sbjct: 65  HRAK-------KRNPESIVIAAGCYVQ-SAKELLEQDESVDIVISNNKKKDITDIVNDYI 116

Query: 143 -----------ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCT 191
                      A   K+    D S E ++E +    GG+       A++ IQ+GC++FC+
Sbjct: 117 NVRKNEGGDTPAGGEKKEYFIDISKETEYEEM----GGHVPVGHTRAYVKIQDGCNQFCS 172

Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLL 251
           +C++PY RG   SRS   V+ E  +L ++G+ E+ L G ++++  GK  + E     DL+
Sbjct: 173 YCIIPYVRGRIRSRSEEAVIAEVTELAESGIKEVVLTGIHISS-YGKDKNNEGA-LIDLI 230

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
            ++S+IKG+ R+R  +  P  +++  ++       + P+ HL +QSG + ILK MNR++T
Sbjct: 231 DAISKIKGIKRIRLGSLEPGIITEDFVRRVSANKKVCPHFHLSLQSGCNTILKRMNRKYT 290

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
             +Y +  + +R      A+++D IVGFPGETD++F  T+  + ++   +   FKYSPR 
Sbjct: 291 REQYFEKCEMLREAYDAPALTTDVIVGFPGETDEEFEETVQYLTELNLYEMHIFKYSPRK 350

Query: 372 GTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVG--QIIEVLIEKHGKEKGKLV 429
           GT  + M +QV   VK +R   L +     + ++     G    + V    H ++   L 
Sbjct: 351 GTVAAAMKDQVSPEVKNKRSDVLLELAERGKKAYEAKYEGAELEVLVEEVLHREDGTYLR 410

Query: 430 GRSPWLQSVVLNS-----KNHNIGDIIKVR 454
           G +     +++ +         +   + VR
Sbjct: 411 GHTERYMDILIKAGDIPMPESFVNSFVYVR 440


>gi|332158106|ref|YP_004423385.1| hypothetical protein PNA2_0464 [Pyrococcus sp. NA2]
 gi|331033569|gb|AEC51381.1| hypothetical protein PNA2_0464 [Pyrococcus sp. NA2]
          Length = 429

 Score =  326 bits (835), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 114/447 (25%), Positives = 216/447 (48%), Gaps = 27/447 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + ++++YGC  N  D   M  +    G+E V  +D+++++++N+C +++    K+   + 
Sbjct: 7   KVYIENYGCARNRADGEIMAALLHLAGHEIVYDLDESEIVIVNSCAVKDPTERKIARRIR 66

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            + +             V+V GC+     E I      V+ V+G ++  R+ + +E A  
Sbjct: 67  ELLD---------EGKKVIVTGCLPHVNPEVI---DERVSAVLGVKSIDRIVQAVEYAIR 114

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G++++      +   ++L +        R V   + I EGC   CT+C   + RG+  S 
Sbjct: 115 GEKLISVPDWRKRNLDKLDLPRLSL---RTVYFIVPIAEGCLNACTYCATRFARGVLKSY 171

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           S  ++V+  +  I  G  EI L  ++     G  +       + LL  ++ I+G  R+R 
Sbjct: 172 SPEKIVEWVKWAIKQGYKEIWLSAEDTG-CYGFDI---GTNLAKLLDEITAIEGEFRIRV 227

Query: 266 TTSHPRD---MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
              +P       D LI+A+ D D +  +LHLPVQSG + IL+ M R +T  E+ +I++  
Sbjct: 228 GMMNPNHVIKFLDELIEAYQD-DKVYKFLHLPVQSGDNEILRRMGRNYTVEEFEEIVNAF 286

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R   PD+ + +D IVGFPGE+++ F+ +++L+ +I   +    +YSPR GT  +   +Q+
Sbjct: 287 RKKFPDLNLHTDIIVGFPGESEEAFQKSVELIKRIKPDKVNVSRYSPRPGTIAAKW-KQL 345

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
              +  ER   L +   +     N   +G+ +EVLI   GK+ G +   +   + ++L  
Sbjct: 346 PGWLIKERSRLLHRLRLQISYEINQKYIGRKMEVLIHGEGKK-GNVDAVTMNYKHIILPK 404

Query: 443 KNHNIGDIIKVRITDVKISTLYGELVV 469
                G     ++ +   + L GE+V 
Sbjct: 405 GEK--GKFEVAKVKNATSTYLLGEIVT 429


>gi|217967713|ref|YP_002353219.1| MiaB-like tRNA modifying enzyme [Dictyoglomus turgidum DSM 6724]
 gi|217336812|gb|ACK42605.1| MiaB-like tRNA modifying enzyme [Dictyoglomus turgidum DSM 6724]
          Length = 417

 Score =  326 bits (835), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 128/447 (28%), Positives = 224/447 (50%), Gaps = 42/447 (9%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++    ++GC++N Y++  ++ +  + G+E V    +ADLI +N+C +   A  K    +
Sbjct: 2   RKVAFYTFGCKVNQYETENLKILARNAGFEIVPFGKEADLIFINSCAVTHVAERKARRLI 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             I+N          +  + +AGC A+     +     +++ V+  +  +      E + 
Sbjct: 62  NLIKN-------RFPNAKIALAGCYAERL--NLSSEKLVLDFVLDNKQKWEFFGGSEDSA 112

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
           F                           +    A L IQ+GC+ FCT+C+VPY RG E S
Sbjct: 113 F------------------------VTSEDRARAILKIQDGCNNFCTYCIVPYLRGRERS 148

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           +   +V++EA+KL++NG  EI L G  + A  G+ L G+K   S LL  L E+ GLV++R
Sbjct: 149 KPFDKVMEEAQKLVENGFKEIVLTGIRLGA-YGRDL-GDKDALSKLLLKLFEMDGLVKIR 206

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
            ++  P D+++ LIK   D   L  + H+P+QSG D ILK MNRR+    + QI+ ++R 
Sbjct: 207 LSSIEPMDITEGLIK-LADHPKLCKHWHIPLQSGDDEILKKMNRRYDTKYFEQIVYKLRE 265

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             PD+AI++D IVG+P E++++F  T    +++G+ +   F YSPR  TP   +   +  
Sbjct: 266 KVPDVAITTDIIVGYPEESEENFNNTYLFAERMGFMRIHVFPYSPRPFTPAYKLKP-LPY 324

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
            V  +R   L K   +    +    + + +EV++E+  +++    G +     V   S  
Sbjct: 325 EVITKRKEKLIKLSNDLWERYVSKFIEKELEVMVEE--RKENLYRGTTDNYIKVEFESNL 382

Query: 445 HNI-GDIIKVRI--TDVKISTLYGELV 468
               G+ IKVR+   D K   ++GE++
Sbjct: 383 LLKEGEYIKVRLLKVDNKEEKVWGEVL 409


>gi|194336812|ref|YP_002018606.1| MiaB-like tRNA modifying enzyme YliG [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|238066432|sp|B4SBD5|RIMO_PELPB RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|194309289|gb|ACF43989.1| MiaB-like tRNA modifying enzyme YliG [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 431

 Score =  326 bits (835), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 116/454 (25%), Positives = 199/454 (43%), Gaps = 33/454 (7%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           +   + F+ S GC  N  DS R+     + G     + D+AD I++NTC   E A E+  
Sbjct: 1   MTTHKLFLLSLGCSKNTVDSERLMAQAEASGIIFTETADEADTILINTCGFIEDAKEESI 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           + +    + K+     G    + V GC+ +    E+      V+   G +    +   L 
Sbjct: 61  TEILAAIDKKSE----GTIQRLYVMGCLTELYRNELKEEMAEVDGFFGTRELPEILAALG 116

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
            A   +                 + D           +L I EGC++ C+FC +P  RG 
Sbjct: 117 AAYHEE-----------------LYDHRSLLTPPHYTYLKIAEGCNRSCSFCSIPKIRGR 159

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
             S+ + Q++ EA  L ++GV E+ ++ Q+++ + G    G K   +DL+  LS++    
Sbjct: 160 YRSQPVEQLLREAILLKNSGVKELNIISQDISMF-GYDTMG-KSMLNDLVLRLSDMAFD- 216

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
            +R   ++P +    +I+   + + +  YL +P+Q  +DRILKSMNR     E  Q+I+ 
Sbjct: 217 WIRLLYAYPVNFPLEVIETMRERENICNYLDIPLQHCNDRILKSMNRGINKQESIQLIET 276

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R   PDI + +  I G+PGET ++F   ++ V+   + +   F Y      P   + + 
Sbjct: 277 VREKNPDIRLRTTMIAGYPGETREEFDELLEFVEANRFDRLGCFPYCHEEYAPSFALEDN 336

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           V    K +R+  L +         N    G+ I VLI++   E+G   GR+ +    V N
Sbjct: 337 VSAEEKQDRVAELMELQESVSQDKNRDFEGKEITVLIDQV--EEGMAFGRTEYDAPEVDN 394

Query: 442 SKNHNIGD-------IIKVRITDVKISTLYGELV 468
                 GD           RITD     L GE++
Sbjct: 395 ECMLETGDFQVEPGMFCHARITDSTPFDLVGEVI 428


>gi|84496907|ref|ZP_00995761.1| hypothetical protein JNB_05270 [Janibacter sp. HTCC2649]
 gi|84383675|gb|EAP99556.1| hypothetical protein JNB_05270 [Janibacter sp. HTCC2649]
          Length = 466

 Score =  326 bits (835), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 125/462 (27%), Positives = 197/462 (42%), Gaps = 26/462 (5%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +   V + GC  N  DS  +     + G+  V+   +AD+ V+NTC   E+A +     L
Sbjct: 9   RSVAVVTLGCTRNDVDSEELAGRLKAGGWTLVDDASEADVAVVNTCGFVEQAKKDSIDSL 68

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
                LK      G    VV  GC+A+  G+ +    P  + V+G  +Y  +   L    
Sbjct: 69  IEASALKE----TGRTQKVVAVGCLAERYGQTLADELPEADAVLGFDSYADMSTHLRTIL 124

Query: 145 FGKRVVDTDYSVEDKFERLSIVD------------GGYNRKR---GVTAFLTIQEGCDKF 189
            G  V     S   K   LS V                 R R   G  A L I  GCD+ 
Sbjct: 125 DGGTVKSHVPSDRRKLLPLSPVTRQEASADVALPGHSAPRARLDSGPWAPLKIASGCDRR 184

Query: 190 CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSD 249
           C FC +P  RG  +SR  + V++EAR L   GV E+ L+ +N  +  GK L G+      
Sbjct: 185 CAFCAIPMFRGSFVSRRPTDVIEEARWLATQGVRELFLVSENSTS-YGKDL-GDLALMDA 242

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
           LL  L++I G+ R+R +   P ++   L+ A   +  +MP+  L  Q  S  +L+ M R 
Sbjct: 243 LLPELADIDGIERVRVSYLQPAEVRPGLLDAMVAIPEVMPWFDLSFQHASAPLLRRMRRF 302

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369
                +  +ID +R   P   I S+ IVGFPGET+ +       +          F YS 
Sbjct: 303 GGTEPFLGLIDDVRRRSPLAGIRSNVIVGFPGETEAEVDELAQFLTAARLDVVGVFGYSD 362

Query: 370 RLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV 429
             GT G  +  +VD    A+R+  +   + E      +  +G+ + VLIE+   E G ++
Sbjct: 363 EDGTEGELLPNKVDAQDIADRVARITDLIEELTTQRAEDRIGESVRVLIEEVDDETGDVI 422

Query: 430 GRS----PWLQSVV-LNSKNHNIGDIIKVRITDVKISTLYGE 466
           GR+    P +     +     +IG+ +   +   +   L  +
Sbjct: 423 GRAEHQGPDVDGTTRVVGAQASIGETVLATVVGTEGIDLVAD 464


>gi|225018731|ref|ZP_03707923.1| hypothetical protein CLOSTMETH_02681 [Clostridium methylpentosum
           DSM 5476]
 gi|224948459|gb|EEG29668.1| hypothetical protein CLOSTMETH_02681 [Clostridium methylpentosum
           DSM 5476]
          Length = 409

 Score =  326 bits (835), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 121/427 (28%), Positives = 220/427 (51%), Gaps = 20/427 (4%)

Query: 44  MEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLV 103
           M D+F+  GY+ V+  D+AD+ V+N+C +     +K    L R +       +   D +V
Sbjct: 1   MMDLFYQSGYDVVHCDDEADVYVVNSCTVTSSGDKKARQALRRFK-------RANPDAVV 53

Query: 104 VVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA-RFGKRVVD-TDYSVEDKFE 161
            + GC  QA  + + ++ P  +V+ G      +   + RA   G+RV++ T +   + FE
Sbjct: 54  ALTGCFPQAFPD-VDKQIPEADVITGSYNRAGIVSAVRRALETGERVIEITPHKKGESFE 112

Query: 162 RLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNG 221
           ++++            AF+ I++GCD++CT+C++P  RG   S+ ++++ +E R L  NG
Sbjct: 113 KMAV----KKFSERTRAFVKIEDGCDRYCTYCIIPKARGPVRSKQMAELREELRDLAANG 168

Query: 222 VCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAH 281
             E+ L+G N++++   G D E     D +     + G+ R+R  +  P  ++   I+  
Sbjct: 169 YKEVVLVGINLSSY---GRDLENTRLIDAVRLACSVDGIERVRLGSLEPELLTGEDIQTL 225

Query: 282 GDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPG 341
             L    P  HL +QSG D  LK MNR + + EY +I+  IR+   + +I++D +VGFPG
Sbjct: 226 ASLPKFCPQFHLSLQSGCDATLKRMNRHYDSAEYLRIVQDIRTAFDNPSITTDIMVGFPG 285

Query: 342 ETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQ 401
           ET+++F  ++   +++G A+A  F YS R GT  + M  Q+   VK +R   + +     
Sbjct: 286 ETEEEFAQSLAFAERVGLAKAHVFPYSVREGTAAARMP-QLGGEVKQQRAAEMARLTDRT 344

Query: 402 QVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKIS 461
           + +F +  +G+  EVL E   ++ G   G +     V++ S+    G I  V+I  +   
Sbjct: 345 RRAFLETQLGRTEEVLFE--TEQDGYYHGYTKNYTPVLVKSEEALCGQIKCVKIESIVEE 402

Query: 462 TLYGELV 468
              G+L+
Sbjct: 403 KCLGKLL 409


>gi|298242342|ref|ZP_06966149.1| MiaB-like tRNA modifying enzyme [Ktedonobacter racemifer DSM 44963]
 gi|297555396|gb|EFH89260.1| MiaB-like tRNA modifying enzyme [Ktedonobacter racemifer DSM 44963]
          Length = 495

 Score =  326 bits (835), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 125/511 (24%), Positives = 213/511 (41%), Gaps = 71/511 (13%)

Query: 13  MVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHI 72
           M      +      F V + GC++N  DS  + +   + G+ +    + AD+ ++NTC +
Sbjct: 1   MPEHTTQET----TFAVTTLGCKVNQADSEAIGEQMSTAGFIQRGFDEAADIYIVNTCTV 56

Query: 73  REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT 132
                      + + +       +   D  +VV GC A+   + +    P V++V+G   
Sbjct: 57  THLGDRSSRQLIAQAQ-------RRHPDAFLVVTGCYAELNPQGVAA-LPGVDMVIGNTG 108

Query: 133 YY---------------------------RLPELLERARFGKRVVDTDYSVEDKFERLSI 165
                                         + E+L R       +DT +   D    L  
Sbjct: 109 KDSLVETIKQRYESMAGQVASVEPEAPTPPIDEMLARRALPVLPLDTQHIGSDNALDLLP 168

Query: 166 VDGGYNRKRG-----------------------VTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            +     +                             + +Q+GC+  CT+C+VPY RG  
Sbjct: 169 AEPEPAPENPSSLSPFTDNTQTTEQANARIFSRTRVQMKVQDGCNNRCTYCIVPYVRGNS 228

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR++  VV+  ++    G  EI L G ++  +   G   E+    DL+ +L     + R
Sbjct: 229 RSRTIDSVVEHVQRKARAGYQEIVLTGIHLGDYHPAG--DEQKDLGDLIATLLRETDMPR 286

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R ++  P D     +    D   +  + HLP+QSGSD IL+ M RR+ +  YR+II   
Sbjct: 287 IRVSSLEPEDFRLEWLDLWQD-PRMCRHFHLPMQSGSDNILRRMARRYNSARYREIILTA 345

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           +   P +AIS+D I GFPGETD+DF  T  L  ++ +A+   F++S R GT  + M  Q+
Sbjct: 346 KQRIPGVAISTDIITGFPGETDEDFELTYQLAQELEFAKTHVFRFSARQGTAAARMRGQI 405

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
            + VK ER   L     E    F    +GQ ++VLIE+   + G   G +     V L+ 
Sbjct: 406 KDVVKKERSARLLTLNEEHSRQFRQQFLGQTVDVLIEQS--KHGYWEGLTDNYLRVELHD 463

Query: 443 KNHNIG----DIIKVRITDVKISTLYGELVV 469
             +  G     ++  R++ +    ++GE V 
Sbjct: 464 LPNPEGAWQHKLVTARLSHLVDDGIHGEYVA 494


>gi|325831383|ref|ZP_08164637.1| ribosomal protein S12 methylthiotransferase RimO [Eggerthella sp.
           HGA1]
 gi|325486637|gb|EGC89085.1| ribosomal protein S12 methylthiotransferase RimO [Eggerthella sp.
           HGA1]
          Length = 455

 Score =  326 bits (835), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 117/463 (25%), Positives = 192/463 (41%), Gaps = 18/463 (3%)

Query: 14  VSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIR 73
           + +  D  +V       + GC  N  D+ RM       G+       +AD +V+NTC   
Sbjct: 1   MERSSDAALVAPCVAFVTLGCAKNEADTARMRVRLAEAGFLIEVDPAEADAVVVNTCSFI 60

Query: 74  EKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTY 133
           + A E+    +     + N          ++VAGC+    GE++          V     
Sbjct: 61  QSATEESIEAVFDAAGMPNVAA----GAPLIVAGCMPARYGEDLADELVEARAFVPCSRE 116

Query: 134 YRLPELLERARF------GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCD 187
             +  ++  A        G     T  +     E                A++ I +GCD
Sbjct: 117 DDIAAIVADALGVDAPGGGAAASVTLSASGGAAEVEGSRAALAALPAAPFAYVKISDGCD 176

Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTF 247
           +FCT+C +PY RG   S  L  V  +    +  G  EI L+ Q+   W G   D E  + 
Sbjct: 177 RFCTYCTIPYIRGRYRSFPLDDVRADVAAQVAAGAREIVLIAQDTGRW-GADFD-EPSSL 234

Query: 248 SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307
           + L+ +L+E       R     P  +SD L+ A    D +  Y  +P+Q     IL++MN
Sbjct: 235 AALVAALAEEFPQTWFRIMYIQPEGLSDELLDAVAAHDNVCDYFDIPLQHVDAGILRAMN 294

Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           R  +  E+  ++DR+ +  P   + +  I GFPGET++ F      V++  +     F Y
Sbjct: 295 RTGSREEFLALVDRVLAHVPGATLRTTLIAGFPGETEEQFEDLCSFVEEGLFDYVGVFPY 354

Query: 368 SPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK 427
           S   GT   ++  Q+DE+ K +R   L+            A VG+ ++VL+E   +E G+
Sbjct: 355 SREEGTRAFDLPGQLDEDEKNDRAQRLRDLADAVCCPRIAARVGREMDVLVEGV-EEDGQ 413

Query: 428 LVGR----SPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGE 466
           L GR    +P +  V         G+I +VRI D  +  + GE
Sbjct: 414 LFGRAMCQAPEVDGVTYLDAGE-PGEIRRVRIVDALLYEMEGE 455


>gi|237740317|ref|ZP_04570798.1| Fe-S oxidoreductase [Fusobacterium sp. 2_1_31]
 gi|229422334|gb|EEO37381.1| Fe-S oxidoreductase [Fusobacterium sp. 2_1_31]
          Length = 439

 Score =  325 bits (834), Expect = 8e-87,   Method: Composition-based stats.
 Identities = 118/445 (26%), Positives = 225/445 (50%), Gaps = 20/445 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++    + GC++N Y++  +++    +GYE V   D +D+ ++N+C +   A  K  + L
Sbjct: 5   KKVAFHTLGCKVNQYETESIKNQLIKRGYEEVPFEDKSDIYIINSCTVTSIADRKTRNML 64

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R +       K   +  V+V GC AQ    EIL     V+ V+  +    +   +    
Sbjct: 65  RRAK-------KINPEAKVIVTGCYAQTNSREIL-EIEDVDFVIDNKNKSNIVNFVGAIE 116

Query: 145 --FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
               +R  + +   E +++           +    A++ IQ+GC+ FC++C +P+ RG  
Sbjct: 117 DISFEREKNGNIFQEKEYQEYEFATL----REMTRAYVKIQDGCNHFCSYCKIPFARGKS 172

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR    ++ E  KL+++G  E+ L+G +++A  G+  + EK +F  LL  + +IK L R
Sbjct: 173 RSRKKENILKEIEKLVEDGFKEVILIGIDLSA-YGEDFE-EKDSFESLLEDILKIKDLKR 230

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R  + +P  ++D  I    +   LMP+LH+ +QS  D +LK+M R + +   R+ + ++
Sbjct: 231 VRIGSVYPDKITDKFIDLFKN-KNLMPHLHISLQSCDDTVLKNMRRNYGSALIRESLLKL 289

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           +S   ++  ++D IVGFP E D  F+ T +++ +I ++    F+YS R GT  SNM  +V
Sbjct: 290 KSKVKNMEFTADVIVGFPKEDDSMFQNTRNVIKEIEFSGLHIFQYSDREGTIASNMDGKV 349

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
           D   K +R   L +  +E  +   +  +G+++E  +    +++G+  G S     V   S
Sbjct: 350 DAKTKKQRADSLDQLKQEMILESREKYLGKVLE--VLVEEEKEGEYFGYSQNYLRVKFKS 407

Query: 443 KN-HNIGDIIKVRITDVKISTLYGE 466
           +  + I  +I  +I  ++   L GE
Sbjct: 408 EEKNLINQLINTKIKSIEDDILIGE 432


>gi|313114955|ref|ZP_07800450.1| MiaB-like tRNA modifying enzyme [Faecalibacterium cf. prausnitzii
           KLE1255]
 gi|310622715|gb|EFQ06175.1| MiaB-like tRNA modifying enzyme [Faecalibacterium cf. prausnitzii
           KLE1255]
          Length = 431

 Score =  325 bits (834), Expect = 8e-87,   Method: Composition-based stats.
 Identities = 120/447 (26%), Positives = 213/447 (47%), Gaps = 26/447 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R    + GC++N+ ++  +E MF + G+      + AD+ V+N+C +     +K   +L 
Sbjct: 2   RVCFYTLGCKVNLNETGALEQMFRANGFTIAQENEPADVFVVNSCTVTNFGDQKSRKWLR 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R +       +E    + V+ GC  QA  EE   +    ++V G      + + + +   
Sbjct: 62  RKK-------RENPGAVTVLTGCYPQAFPEE-AAQFTEADLVCGNGDRKAILDNVLKLLD 113

Query: 146 GKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           G    V  T +   +KFE L +       +    AF+ +++GC++ C +CV+P  RG   
Sbjct: 114 GHERIVAITPHQRGEKFEELPV----ERFETHTRAFIKVEDGCNRQCAYCVIPRARGPVR 169

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR  + ++ E R+L  +G  E+ L   ++ ++   GLD       +L+   ++++G+ R+
Sbjct: 170 SRDEASILAELRQLAASGYREVVLSAISLPSY---GLDTG-TNLVELVEHCAQVEGIQRI 225

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R  +  P  ++   I     ++ L P  HL +QSG    L+ M R +TA +Y Q++D++R
Sbjct: 226 RLGSLDPDMLTPEFITRLAAVEKLCPQFHLSLQSGCTATLRRMRRVYTAEQYAQVVDQLR 285

Query: 324 SVRPD--IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +   +  ++ ++D I GFPGET  DF  + + + KIG+ +   F YS R GTP  +  EQ
Sbjct: 286 AAYGERPVSFTTDCICGFPGETQADFEESCEFLKKIGFLKVHVFPYSRRSGTPAYDFPEQ 345

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           V E  K ER   +     E +     A VG   +VL+E          G +     VV++
Sbjct: 346 VHEREKQERSRVMNGIAEEVRREVLTAYVGTEDDVLLETPL-SGTLFTGYTRLYIPVVVS 404

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
           +  H  G I+ V + +       GE V
Sbjct: 405 APGHESGQIVHVTLGEYD-----GERV 426


>gi|260174153|ref|ZP_05760565.1| putative Fe-S oxidoreductase [Bacteroides sp. D2]
 gi|315922418|ref|ZP_07918658.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313696293|gb|EFS33128.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 439

 Score =  325 bits (834), Expect = 8e-87,   Method: Composition-based stats.
 Identities = 113/442 (25%), Positives = 206/442 (46%), Gaps = 18/442 (4%)

Query: 17  IVDQCIVPQRFFVK-SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREK 75
           ++D  +   +  V  + GC++N  ++  +  +    G       + AD+ V+NTC + E 
Sbjct: 1   MIDTTVFQNKTAVYYTLGCKLNFSETSTIGKILREVGVRTARKGEKADICVVNTCSVTEM 60

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135
           A +K    + R+       +K+     V+V GC AQ +  ++  +   V+VV+G +    
Sbjct: 61  ADKKCRQAIHRL-------VKQHPGAFVIVTGCYAQLKPGDVA-KIDGVDVVLGAEQKGE 112

Query: 136 LPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
           L + L   +  ++      + +D            +R      FL +Q+GCD FC++C +
Sbjct: 113 LLQYLGDLQKHEKGEAITTTTKDIRSFSP----SCSRGDRTRFFLKVQDGCDYFCSYCTI 168

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
           P+ RG   + +++ +V++AR+    G  EI L G N+    G        +F DL+ +L 
Sbjct: 169 PFARGRSRNGTIASMVEQARQAAAEGGKEIVLTGVNI----GDFGKTTGESFFDLVKALD 224

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
           +++G+ R R ++  P  ++D +I+        MP+ H+P+QSG D +L+ M RR+    +
Sbjct: 225 QVEGIERYRISSIEPNLLTDAIIEFVSHSRSFMPHFHIPLQSGCDEVLQLMRRRYDTALF 284

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
              + +I+ V PD  I  D IVG  GET + F      +D +   Q   F YS R GT  
Sbjct: 285 ASKVRKIKEVMPDAFIGVDVIVGTRGETPEYFEQAYQFIDGLDVTQLHVFSYSERPGTQA 344

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWL 435
             +   V    K +R   L     ++  +F    +GQ++ VL+EK  K    + G +   
Sbjct: 345 LKIEYVVSPEEKHQRSQRLLTLSDQKTQAFYARHIGQVMPVLMEK-SKTGVPMHGFTENY 403

Query: 436 QSVVLNSKNHNIGDIIKVRITD 457
             V + + +     ++ VR+ D
Sbjct: 404 IRVEVENDDSLDNRVVNVRLGD 425


>gi|297626501|ref|YP_003688264.1| 2-methylthioadenine synthetase MiaB protein [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
 gi|296922266|emb|CBL56838.1| 2-methylthioadenine synthetase MiaB protein [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
          Length = 477

 Score =  325 bits (834), Expect = 8e-87,   Method: Composition-based stats.
 Identities = 129/483 (26%), Positives = 199/483 (41%), Gaps = 47/483 (9%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           +  ++  + S GC  N  DS  +     + G+  V+  D AD +++NTC   E+A +   
Sbjct: 1   MANKKVHLISLGCARNDVDSEELAGRLEAGGFSLVDEPDSADALIVNTCGFVEQAKKDSI 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             +    +LK+S    GG   VV  GC+AQ  G E+    P  + V+G   Y  + E L 
Sbjct: 61  DTILAAADLKDS----GGPRTVVAVGCLAQRYGAELADSLPEADAVLGFDDYTDIAERLR 116

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT------------------------ 177
               G  V     +V D+   L I     +R+R V                         
Sbjct: 117 TVMAGGTV--QPPTVMDRRTLLPIAPIERHRRRAVPGHQGELPTGIAPASGPRVPRRRLD 174

Query: 178 ----AFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVN 233
               A L I  GCD+ C FC +P  RG  +SR   ++V+EA  L+  GV EI L+ +N +
Sbjct: 175 NAPWAPLKIASGCDRRCAFCAIPSFRGAYLSRDADEIVEEAGWLVGQGVREIMLVSEN-S 233

Query: 234 AWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHL 293
           +  GK L  +      LL  LS + GL  +R +   P ++   L+        ++PY  L
Sbjct: 234 SSYGKDL-ADLRALESLLKRLSALDGLDWIRVSYLQPAELRSSLVDVMTSTPKVLPYFDL 292

Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
             Q  S  +L+ M R      +  +ID IR   P   I S+ IVGFPGET +D     D 
Sbjct: 293 SFQHASAPLLRRMRRFGDPESFLGLIDSIRQRAPQAGIRSNVIVGFPGETSNDVDVLADF 352

Query: 354 VDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQI 413
           + +        F YS   GT  + + + V       R   +               VGQ 
Sbjct: 353 LARARLDAVGVFSYSDEDGTAAAELPDHVAAEEIEARHERIADLANVLCDERAAQRVGQR 412

Query: 414 IEVLIEKHGKEKGKLVGRS----PWLQS---VVLNSKNHN--IGDIIKVRITDVKISTLY 464
           ++VL+E    E  ++ GR+    P +     V++    H    GD++   + D     L 
Sbjct: 413 VQVLVEGV--EGSQVTGRAAHQGPDVDGTTTVLVGQGRHMPTPGDMVSASVIDTVGVDLT 470

Query: 465 GEL 467
            E+
Sbjct: 471 AEI 473


>gi|71282254|ref|YP_268518.1| putative tRNA modifying protein [Colwellia psychrerythraea 34H]
 gi|123774927|sp|Q484J7|RIMO_COLP3 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|71147994|gb|AAZ28467.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Colwellia
           psychrerythraea 34H]
          Length = 454

 Score =  325 bits (834), Expect = 9e-87,   Method: Composition-based stats.
 Identities = 129/475 (27%), Positives = 213/475 (44%), Gaps = 40/475 (8%)

Query: 10  VAHMVSQIVDQCIVPQ--RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVL 67
           +A     +VD     +  +    S GC  N+ DS R+     ++GY+  NS DDA+L+++
Sbjct: 2   IAEQHQAVVDSGASKKGAKVGFVSLGCPKNLVDSERILTQLRTEGYDVTNSYDDAELVIV 61

Query: 68  NTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVV 127
           NTC   + A ++    +G                 V+V GC+     +EI+   P V  V
Sbjct: 62  NTCGFIDSAVQESLDTIGEALAANGK---------VLVTGCLGVK-KDEIIELHPNVLGV 111

Query: 128 VGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCD 187
            GP  Y    E+L       +V +     E       +   G        A+L I EGC+
Sbjct: 112 TGPHAYD---EVLA------QVHEHVAKPEHNPFIDLVPPQGVKLTPKHYAYLKISEGCN 162

Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA------WRGKGLD 241
             CTFC++P  RG   SR +  V+ EA++L+D+GV E+ ++ Q+ +A       +    D
Sbjct: 163 HRCTFCIIPSMRGDLDSRPVGDVLGEAKRLVDSGVKELLVISQDTSAYGVDVKHKTDFWD 222

Query: 242 GE--KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
           G   K     L   L++    +RL Y   +P       + A G    ++PYL +P Q  +
Sbjct: 223 GMPVKTHMQQLCEELAKQGVWIRLHYVYPYPHVDKIIPLMAEG---KILPYLDIPFQHAN 279

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
            RILK M R  ++    + I + R + P++ I S FIVGFPGET+++F   ++ +++   
Sbjct: 280 KRILKLMKRPGSSDRVLERIAKWREICPELVIRSTFIVGFPGETEEEFEELLNFLEEAQL 339

Query: 360 AQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419
            +   FKYSP  G   + + + V + V  +RL        +         +GQ   +L++
Sbjct: 340 DRVGCFKYSPVEGATANALPDHVSDEVMEDRLQRFMAVQAKISSDKLQVRIGQEYLILVD 399

Query: 420 KHGKEKGKLVGRS----PWLQSVVLNSKNH--NIGDIIKVRITDVKISTLYGELV 468
           +       +VGRS    P +   V  S ++    GD I V+I       ++G  V
Sbjct: 400 EVNGLG--IVGRSYMDAPEVDGKVYLSDDYDAKPGDQIWVQIIHADEHDVWGVRV 452


>gi|149174611|ref|ZP_01853237.1| hypothetical protein PM8797T_10069 [Planctomyces maris DSM 8797]
 gi|148846721|gb|EDL61058.1| hypothetical protein PM8797T_10069 [Planctomyces maris DSM 8797]
          Length = 436

 Score =  325 bits (834), Expect = 9e-87,   Method: Composition-based stats.
 Identities = 117/435 (26%), Positives = 193/435 (44%), Gaps = 32/435 (7%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +   + + GC++N Y++  +++     GY      + ADL V+NTC +      K     
Sbjct: 13  KTCQLVTLGCKVNQYETQLVKEALEKNGYREAGEAETADLCVVNTCTVTATGDSKG---- 68

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
              R L  +  K      ++V GC A  + + +    P V  VV       LP++LER  
Sbjct: 69  ---RKLIRNLAKNNPGTKILVMGCYATRDPKTV-SELPGVFEVV--TDKRELPDILER-- 120

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
                           +  + +     RKR   A++ +Q+GC   CT+C++P  R    S
Sbjct: 121 ------------HGIVDMPTGISEFEGRKR---AYVKVQDGCILRCTYCIIPSVRPGLQS 165

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE----KCTFSDLLYSLSEIKGL 260
           RS   +  E R+L+DNG  EI L G +V  +      G+          L   L +I G 
Sbjct: 166 RSPEDIEAEVRRLVDNGFKEIVLTGIHVGHFGVDTTRGKSGKPPFRLWHLFRKLDQIPGD 225

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R ++    +++D  I A  D + L P  H  +QSGSD +L+ M RR+    + + + 
Sbjct: 226 WRMRLSSVETAEINDDFISAAADCEHLCPQFHPSLQSGSDTVLRRMKRRYHVSRFLEKLQ 285

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R      + ++D IVGFPGETD +F  TM   ++  + +   F +S R GTP +   +
Sbjct: 286 KMRERLNHPSFTTDVIVGFPGETDAEFAETMQACEEAAFMKIHIFPFSARKGTPAATYED 345

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKH-GKEKGKLVGRSPWLQSVV 439
           QV   ++ ER   L    R     F    + + +EV+IE+      G + G   W   VV
Sbjct: 346 QVSPEIRQERCAQLADLERSLAQKFYHTLIDRDLEVMIERECDGRPGWVRGTDRWYAPVV 405

Query: 440 LNSKNHNIGDIIKVR 454
                 ++G  +  R
Sbjct: 406 CQGTKADLGKFVYAR 420


>gi|255994803|ref|ZP_05427938.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Eubacterium saphenum ATCC
           49989]
 gi|255993516|gb|EEU03605.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Eubacterium saphenum ATCC
           49989]
          Length = 484

 Score =  325 bits (834), Expect = 9e-87,   Method: Composition-based stats.
 Identities = 129/448 (28%), Positives = 222/448 (49%), Gaps = 25/448 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    + GC++N Y++  + + F S+GYE  +   D D+ ++N+C +   A +KV   + 
Sbjct: 44  KVGFLTLGCKVNQYETRAVAEKFSSRGYEVTSGTKDVDIAIINSCSVTSMAEKKVRQAIR 103

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           ++R       +E  D ++ V GC  Q +G   L+     NV++G ++   + E +E+   
Sbjct: 104 KMR-------RENPDSVIAVMGCYPQRDGGAALKSLGC-NVIIGNESKLGIVEKVEKFLK 155

Query: 146 GKRVV--DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            + V+   TD +    FE +        RKR   A++ IQ+GCD++CT+C++ + RG   
Sbjct: 156 EQSVIIDVTDINRCKTFENIQATCDIDGRKR---AYIKIQDGCDRYCTYCIIAHVRGQVR 212

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           S+ +  + +EA+KL+++G  EI L G N   +      G   +  D++  +S I G  R+
Sbjct: 213 SKKVDDIYEEAKKLVEDGYREIVLTGINTALYGEDLHQGIGKSMVDVINKISTIPGDFRI 272

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R  +  P  ++   I    +L  L  + HL VQSGS+ +L +M R +T  EY  I+D +R
Sbjct: 273 RIGSLEPTVVNKEYINLIKNLPKLCRHAHLSVQSGSNDVLAAMGRNYTREEYIDIVDMLR 332

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
               +  IS+D IVGFPGE++ DF  ++ LV+KI + +   F+YS R GTP +     + 
Sbjct: 333 DAHGNYGISTDIIVGFPGESEKDFEQSLMLVEKIPFTKVHIFRYSERAGTPAAGFKNMIK 392

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
           E +K  R+  L    ++    F++  +G    V+ E   KE+G   G +     V     
Sbjct: 393 EEIKTRRMKELSTIAKDSMRRFHELNMGDRRGVIFE--MKEEGAYTGYTDNYIKVKYKPP 450

Query: 444 ---------NHNIGDIIKVR-ITDVKIS 461
                    +   GDII V  + D    
Sbjct: 451 LDVGKRIENSLEKGDIIDVEFLKDCTDY 478


>gi|189462612|ref|ZP_03011397.1| hypothetical protein BACCOP_03304 [Bacteroides coprocola DSM 17136]
 gi|189430773|gb|EDU99757.1| hypothetical protein BACCOP_03304 [Bacteroides coprocola DSM 17136]
          Length = 438

 Score =  325 bits (834), Expect = 9e-87,   Method: Composition-based stats.
 Identities = 117/433 (27%), Positives = 198/433 (45%), Gaps = 17/433 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++    + GC++N  ++  +  M    G   V   + AD+ V+NTC + E A +K    +
Sbjct: 10  KKAVYYTLGCKLNFAETSTIGKMLKEVGVRTVRKGEQADICVINTCSVTEMADKKCRQAI 69

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R+        KE     +VV GC AQ +  ++      V++V+G +    L + L    
Sbjct: 70  HRLA-------KEHPGAFIVVTGCYAQLKPGQVAD-IEGVDLVLGAEQKGDLMKYLGNLE 121

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
             +       + +D    +       +R      FL +Q+GCD FC++C +P+ RG   +
Sbjct: 122 KHEHGEAITTATKDIRTFVP----SCSRGDRTRYFLKVQDGCDYFCSYCTIPFARGRSRN 177

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
             ++ +V++AR++   G  EI L G N+    G        +F DL+ +L  ++G+ R R
Sbjct: 178 GKIADLVEQARQVAAEGGKEIVLTGVNI----GDFGKTTGESFFDLVKALDAVEGIERYR 233

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
            ++  P  ++D +I+        MP+ H+P+QSG D +LK M RR+    +   I +I+ 
Sbjct: 234 ISSIEPNLLTDEIIEYVARSRRFMPHFHIPLQSGCDEVLKLMRRRYDTALFASKIHKIKF 293

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           + PD  I  D IVG  GET + F    + +  +   Q   F YS R GT    +   V  
Sbjct: 294 LMPDAFIGVDVIVGTRGETPEYFEQAYEFIQGLDVTQLHVFSYSERPGTQALKIDYVVSP 353

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
           + K +R   L     E+  SF    +GQ   VL+E H K    + G +     V L   +
Sbjct: 354 DDKYQRSQRLLVLSDEKTRSFYARHIGQEATVLME-HSKPGCPMHGFTDNYIRVELEQND 412

Query: 445 HNIGDIIKVRITD 457
                +I+VR+ D
Sbjct: 413 ALDNQLIRVRLGD 425


>gi|271963703|ref|YP_003337899.1| RNA modification enzyme, MiaB-family [Streptosporangium roseum DSM
           43021]
 gi|270506878|gb|ACZ85156.1| RNA modification enzyme, MiaB-family [Streptosporangium roseum DSM
           43021]
          Length = 469

 Score =  325 bits (833), Expect = 9e-87,   Method: Composition-based stats.
 Identities = 119/477 (24%), Positives = 204/477 (42%), Gaps = 50/477 (10%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +   + + GC  N  DS  +     + G++  +  DD D+IV+NTC   + A +     L
Sbjct: 5   RTASLITLGCARNEVDSEELAARLEAAGWQVGD--DDPDVIVVNTCGFIDSAKKDSIDTL 62

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
               +             VV AGC+A+  G+++    P    V+    Y ++   L+   
Sbjct: 63  LAAAD---------SGAKVVAAGCMAERYGDQLADALPEAAAVISFDDYTQIGTRLDDVL 113

Query: 145 FGKRVVDTDYSVEDKFERLSIVD--------------------------GGYNRKR---G 175
            GK +V   +S  D+   L I                                RKR   G
Sbjct: 114 EGKPLV--PHSPRDRRTLLPISPVERAAAPKANIPGHGELPDGLAPASGPRPLRKRLGDG 171

Query: 176 VTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW 235
             A L +  GCD+ CTFC +P  RG  +SRS  ++V EA  L   GV E+ L+ +N  + 
Sbjct: 172 PVASLKLASGCDRRCTFCAIPAFRGAYVSRSPEELVSEAAWLAGQGVKELVLVSENSTS- 230

Query: 236 RGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPV 295
            GK L G+      LL SL+  +G+ R+R +   P ++   L++     + + PY  L  
Sbjct: 231 YGKDL-GDLRALEKLLPSLAATEGIERVRVSYLQPAELRPGLLEMIASTESVAPYFDLSF 289

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
           Q  S  +L+ M R      +  +++ +R+  P+  + S+FIVGFPGET+++F      + 
Sbjct: 290 QHASGSVLRRMRRFGDPRRFLDLLESVRATAPEAGVRSNFIVGFPGETEEEFAELTAFLQ 349

Query: 356 KIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIE 415
           +        F YS   GT  +++  ++D+     R+  L +   E      +  +G  ++
Sbjct: 350 EARLDVIGVFGYSDEDGTEAASLPGKLDQETVDARVAALTELAEELMAQRAEERIGTEVD 409

Query: 416 VLIEKHGKEKGKLVGRS----PWLQS-VVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
           VLIE+   + G   GR+    P +   V +       G I++  + D +   L   +
Sbjct: 410 VLIEEDLGDGG-YEGRAAHQGPEVDGSVTVQGIGLVPGQIVRAVVVDSEGVDLIARI 465


>gi|163734417|ref|ZP_02141857.1| MiaB-like tRNA modifying enzyme, hypothetical [Roseobacter
           litoralis Och 149]
 gi|161392425|gb|EDQ16754.1| MiaB-like tRNA modifying enzyme, hypothetical [Roseobacter
           litoralis Och 149]
          Length = 417

 Score =  325 bits (833), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 124/444 (27%), Positives = 201/444 (45%), Gaps = 34/444 (7%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
            P+     + GC++N Y++  M+++    G         +D +V+NTC +  +A  K  S
Sbjct: 3   APK---FTTLGCRLNAYETEAMKELAAQSGL--------SDAVVVNTCAVTGEAVRKARS 51

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR--LPELL 140
            + ++R       +E     ++V GC AQ E +      P V+ V+G     +      L
Sbjct: 52  TIRKLR-------RENPSARLIVTGCAAQTEPQTFAA-MPEVDAVIGNTEKMQGDTWNAL 103

Query: 141 ERARFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
                G+   V  D  +        ++DG   R R   A++ +Q GCD  CTFC++PY R
Sbjct: 104 AADFIGESEAVQVDDIMSVTETAGHLIDGFGTRSR---AYVQVQNGCDHRCTFCIIPYGR 160

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G   S +   V+D+ ++L+D G  E+ L G ++ +W G  L         ++  L  +  
Sbjct: 161 GNSRSVAAGVVIDQIKRLVDKGFNEVVLTGVDLTSW-GADLPAAPKLGDLVMRILRLVPD 219

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           L RLR ++    ++ + L+ A      LMP+LHL +Q G D ILK M RRH   +  +  
Sbjct: 220 LPRLRISSIDSIEVDENLMLAIATEPRLMPHLHLSLQHGDDMILKRMKRRHLRDDAIRFA 279

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
              R +RPD+   +D I GFP ETD  F  ++ LV +        F YS R GTP + M 
Sbjct: 280 QDARRLRPDMTFGADIIAGFPTETDAMFENSLALVQECDLTWLHVFPYSARPGTPAARMP 339

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV 439
             V   +  ER   L+     Q      A VG+   VL+E        ++GR+     V 
Sbjct: 340 -AVHGQIIKERASQLRAAGDAQVQRHLSAQVGKTHSVLMESP------VMGRTEQFTEVQ 392

Query: 440 LNSKNHNIGDIIKVRITDVKISTL 463
           +++     G I+ +R+     + L
Sbjct: 393 VSTPQSE-GTIVSLRVEGTVGAAL 415


>gi|302528498|ref|ZP_07280840.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Streptomyces sp. AA4]
 gi|302437393|gb|EFL09209.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Streptomyces sp. AA4]
          Length = 485

 Score =  325 bits (833), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 119/484 (24%), Positives = 196/484 (40%), Gaps = 40/484 (8%)

Query: 12  HMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCH 71
           ++V          +R  + + GC  N  DS  +     + G+E     +D+D++V+NTC 
Sbjct: 2   NVVPSPAADSARARRVSLVTLGCARNEVDSEELAGRLAAGGWELAAEPEDSDVVVVNTCG 61

Query: 72  IREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ 131
             E A +     L    +             VV  GC+A+  G E+    P  + V+G  
Sbjct: 62  FVESAKKDSVDTLLAAADTGRK---------VVAVGCMAERYGNELADSLPEADAVLGFD 112

Query: 132 TYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGG-------------------YNR 172
            Y  L   L+    G+ +     S   K   +S V                        R
Sbjct: 113 HYADLSARLDDVVAGRTIAAHTPSDRRKLLPISPVQRPAAATEVEVPGHAQHGWGPRVLR 172

Query: 173 KR---GVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLG 229
            R      A L I  GCD+ C+FC +P  RG  +SR   ++V EA  L +NG  E+ L+ 
Sbjct: 173 TRLDDSPVAALKIASGCDRRCSFCAIPSFRGSFVSRQPDEIVAEAAWLAENGAKELFLVS 232

Query: 230 QNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMP 289
           +N  ++              LL  L+ I G+ R+R +   P +    L+KA      +  
Sbjct: 233 ENSTSYGKDFGRDGTRALELLLPRLAGIDGIERVRVSYLQPAETRPQLVKAIATTPGVAD 292

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           Y  L  Q  S+++L+ M R  +   +  + ++IR   P+  I ++ IVGFPGET+DD   
Sbjct: 293 YFDLSFQHSSEQVLRRMRRFGSTDSFLALTEQIREYSPEAGIRTNVIVGFPGETEDDLAE 352

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDAC 409
               +          F YS   GT       ++D    AER+  +   + E      +  
Sbjct: 353 LERFLTGARLDAVGVFGYSDEDGTEAETFDGKLDPAEVAERVARISALVEELTAQRAEDR 412

Query: 410 VGQIIEVLIEKHGKEKGKLVGR----SPWLQS--VVLNSKNHN---IGDIIKVRITDVKI 460
           +G  ++VL+E  G +    VGR    +P +    V+L  +N     +G+I++  + D   
Sbjct: 413 IGTFVDVLVEHDGADGDDAVGRAAHQAPEVDGECVILEDENTKPLAVGEIVRCEVVDSAG 472

Query: 461 STLY 464
             L 
Sbjct: 473 VDLV 476


>gi|256825609|ref|YP_003149569.1| MiaB-like tRNA modifying enzyme YliG [Kytococcus sedentarius DSM
           20547]
 gi|256689002|gb|ACV06804.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Kytococcus
           sedentarius DSM 20547]
          Length = 526

 Score =  325 bits (833), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 132/527 (25%), Positives = 210/527 (39%), Gaps = 78/527 (14%)

Query: 13  MVSQIVDQCIVP----QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLN 68
           M S   D+   P    +   + + GC  N  DS  +     + G+E V+  D AD+ V+N
Sbjct: 1   MSSATTDRAAAPDTERRSVHIATLGCTRNEVDSEELAGRLAAAGWELVDEADGADVTVVN 60

Query: 69  TCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVV 128
           TC   ++A +     +    +LK      G    VV  GC+A+  G E+    P  + V+
Sbjct: 61  TCGFVDQAKKDSIDAVLDAHDLKEE----GRTGAVVAVGCLAERYGNELAAELPEADAVL 116

Query: 129 GPQTYYRLPELLERARFGKRVV-------------------------------------- 150
           G  +Y  +   L     G                                          
Sbjct: 117 GFDSYADMSSSLRAVLAGHSPEAHTPGDRRKLLPLSPVARQGSAASVSLPGHGTASAEDL 176

Query: 151 ---------DTDYSVEDKFERLSIV-----DGGYNRKR---GVTAFLTIQEGCDKFCTFC 193
                    D    VE    RL             R+R      A L I  GCD+ C+FC
Sbjct: 177 AEAGLTVQDDAVTPVEPADARLDAPAPASGPSTIIRRRLNDKPWAPLKIASGCDRRCSFC 236

Query: 194 VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS 253
            +P  RG  +SR  + V+ EA  L +NGV E+ L+ +N  +  GK L G+      +L  
Sbjct: 237 AIPAFRGAYLSRRPTDVLAEAHWLAENGVKEVFLVSENTTS-YGKDL-GDLRLLDTMLPE 294

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
           L+ I G+ R+R +   P +M   L++A  +   ++PY  L  Q  S  +L+ M R   A 
Sbjct: 295 LAAIDGIERVRVSYLQPAEMRPELLRAMVETPGVVPYFDLSFQHASGPLLRRMRRFGDAE 354

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
            +  +ID++R+  PD  + S+ I GFPGET+ D     D V +        F YS   GT
Sbjct: 355 GFLGLIDQVRTASPDAGLRSNVICGFPGETEQDVEVLADFVTRAQLDVLGVFGYSDEDGT 414

Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI---EKHGKEKGKLVG 430
            G  +  ++ + V  ER+  ++    E         VG  + VL+   E  G+   ++VG
Sbjct: 415 EGEKLDGKLPQEVIDERVAHIRDLAEEVMAQRAADRVGDAVSVLVEAHEDEGEAGTQVVG 474

Query: 431 R----SPWLQSVVL------NSKNHNIGDIIKVRITDVKISTLYGEL 467
           R     P +  V +         +  +GDI++  + D +   L   +
Sbjct: 475 RPEQQGPEVDGVTILVDAAGAPADVAVGDIVRATVVDSQGVDLVARI 521


>gi|241206754|ref|YP_002977850.1| MiaB-like tRNA modifying enzyme [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240860644|gb|ACS58311.1| MiaB-like tRNA modifying enzyme [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 424

 Score =  325 bits (833), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 119/436 (27%), Positives = 189/436 (43%), Gaps = 28/436 (6%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V ++GC++N Y+S  M+      G          + I++NTC +  +A  +    +    
Sbjct: 6   VITFGCRLNTYESEVMKAQAEKAGLN--------NAILVNTCAVTGEAVRQARQAI---- 53

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
                  ++     ++V GC AQ E +     +  V+ V+G +             FG  
Sbjct: 54  ---RRARRDNPHARIIVTGCAAQTEKQTFAAMA-EVDAVLGNEEKLTTASYRGLPDFGVS 109

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRG-VTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
             +    V D     +          G V AF+ +Q GCD  CTFC++PY RG   S  +
Sbjct: 110 A-EEKLRVNDIMSVKATAPQMVRHIDGHVRAFIQVQNGCDHRCTFCIIPYGRGNSRSVPM 168

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
             VVD+ARKL+D G  EI L G +  +  G  L G           L +I  + RLR ++
Sbjct: 169 GAVVDQARKLVDGGYREIVLTGVDATS-YGCDLPGAPTLGLLAKTLLKQIPDIRRLRLSS 227

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
               +    L+    D    MP+LHL +Q G D ILK M RRH   +  + I+  R +RP
Sbjct: 228 IDSIEADAHLMDLIADEPRFMPHLHLSLQHGDDMILKRMKRRHLRADALRFIEDARRLRP 287

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
           +++  +D I GFP ET++ F   + L ++   A    F YS R GTP + M  Q+D ++ 
Sbjct: 288 EMSFGADMIAGFPTETEEMFDNAVRLAEEANIAHLHVFPYSLRPGTPAARMP-QLDRSLV 346

Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNI 447
            +R   L+        S  D  +G    +L+E +G      +  +     V   +     
Sbjct: 347 KDRAAKLRAAGHRLHQSHLDRMIGTRQWLLVENNG------LAHTENFTLV--AAPGLRP 398

Query: 448 GDIIKVRITDVKISTL 463
           G+++ V IT      L
Sbjct: 399 GELVPVTITGHNGKHL 414


>gi|260911507|ref|ZP_05918095.1| Fe-S oxidoreductase [Prevotella sp. oral taxon 472 str. F0295]
 gi|260634371|gb|EEX52473.1| Fe-S oxidoreductase [Prevotella sp. oral taxon 472 str. F0295]
          Length = 446

 Score =  325 bits (833), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 121/437 (27%), Positives = 201/437 (45%), Gaps = 17/437 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +     + GC++N  ++     M    G    N  + AD+ ++NTC + E A  K    +
Sbjct: 10  KTAAYYTLGCKLNFSETSTFGQMLQDMGVRTANEGEPADICLINTCSVTEVADHKCRQII 69

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R+       +++     VVV GC AQ E E +      V++V+G      L + L  A 
Sbjct: 70  HRM-------VRKNPGAFVVVTGCYAQLESERV-SAIEGVDLVLGSNEKANLIQYLNDAW 121

Query: 145 F-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             G+R          K + +       +R      FL +Q+GCD FCT+C +P+ RG   
Sbjct: 122 ADGQRGSALHRHFSVKTKDIKTFAPSCSRGNRTRYFLKVQDGCDYFCTYCTIPFARGFSR 181

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           + S+S +V +A+   + G  EI L G N+  ++G+G +     F DL+ +L +++G+ R 
Sbjct: 182 NPSISSLVQQAQDAANEGGKEIVLTGVNIGEFKGEGNE----RFIDLVKALDQVEGIQRF 237

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R ++  P  ++D LI         MP+ H+P+QSGSD +LK M RR+    +   +  I+
Sbjct: 238 RISSIEPNLLTDELIDYCATSRAFMPHFHIPLQSGSDEVLKLMQRRYDTALFAHKVQLIK 297

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              P+  I  D +VG  GE    F    + +  +  +Q   F YS R GT    +   V 
Sbjct: 298 QRIPNAFIGVDVMVGSRGEEPAYFEDCYNFLKSLDISQLHVFPYSERPGTAALRIPYVVS 357

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN-- 441
           +  K  R   L +   E+  +F  + +G   +VL EK  K K  + G +P    V L   
Sbjct: 358 DAEKRRRSKLLLELSDEKLEAFYASQIGSQSQVLFEKAAKGKA-MHGFTPNYVRVELPAR 416

Query: 442 -SKNHNIGDIIKVRITD 457
            +K+     ++ VR+T 
Sbjct: 417 LAKDEFDNQLLPVRLTQ 433


>gi|21674219|ref|NP_662284.1| hypothetical protein CT1398 [Chlorobium tepidum TLS]
 gi|81791059|sp|Q8KCL7|RIMO_CHLTE RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|21647384|gb|AAM72626.1| conserved hypothetical protein [Chlorobium tepidum TLS]
          Length = 434

 Score =  324 bits (832), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 117/448 (26%), Positives = 199/448 (44%), Gaps = 33/448 (7%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
            F+ S GC  N  DS R+     + G    +++D+AD+I++NTC   + A ++       
Sbjct: 11  IFLLSLGCSKNTVDSERLTAQAVASGLTFTDNVDEADIILINTCGFIKDAKQESIDETLA 70

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
               K      G    V V GC+ +   +E+    P ++ + G +     PE+L      
Sbjct: 71  AIGKKEE----GVVREVYVMGCLVELYRKELAEEMPEIDGLFGTREL---PEVLAAIGAK 123

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
            R        E+ F+R  ++           AFL I EGC++ C+FC +P  RG  +S+ 
Sbjct: 124 YR--------EELFDRRELL------TPPHYAFLKIAEGCNRRCSFCSIPKIRGPYVSQP 169

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
           + Q++ EA  L   GV E+ L+ Q++ +  G  L G K   +DL   LS++ G   +R  
Sbjct: 170 IEQLLREAALLQQQGVKELNLIAQDI-SVYGYDLYG-KSALNDLTLRLSDM-GFNWIRLL 226

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
            ++P +    +I    +   +  Y+ +P+Q  +DRILKSM R        Q+ID IR   
Sbjct: 227 YAYPLNFPLEVISTMRERPNVCNYIDMPLQHINDRILKSMQRGIGRKATEQLIDDIRQKN 286

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           PDI + +  I G+PGET  +F   +D + +  + +   F Y          + + V +  
Sbjct: 287 PDIRLRTTMIAGYPGETRAEFEELLDFIRQTRFDRLGCFPYRHEEHASAYALEDTVSDEE 346

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPW------LQSVVL 440
           K +R+  L +       S N    GQ ++VLI++   E+     R+ +         ++ 
Sbjct: 347 KEKRVGELMELQEGISASLNRKLEGQTLKVLIDRI--EESVAYARTEYDAPEVDNDVIIE 404

Query: 441 NSKNH-NIGDIIKVRITDVKISTLYGEL 467
                   GD  +V I D     L+G +
Sbjct: 405 IGDEAVEEGDFRQVMIEDSTAYELFGRI 432


>gi|163745241|ref|ZP_02152601.1| MiaB-like tRNA modifying enzyme, hypothetical [Oceanibulbus
           indolifex HEL-45]
 gi|161382059|gb|EDQ06468.1| MiaB-like tRNA modifying enzyme, hypothetical [Oceanibulbus
           indolifex HEL-45]
          Length = 417

 Score =  324 bits (832), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 129/442 (29%), Positives = 201/442 (45%), Gaps = 35/442 (7%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
             + GC++N Y++  M+++    G +        + +V+NTC +  +A  K    + ++R
Sbjct: 6   FSTMGCRLNAYETEAMKELAEQAGLQ--------NAVVVNTCAVTAEAVRKARQDIRKLR 57

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA----- 143
                  K   +  ++V GC AQ E E      P V+VV+G     +       A     
Sbjct: 58  -------KAHPEARLIVTGCAAQTEPET-FNAMPEVDVVIGNTEKMQGATWQGMAADFIG 109

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
                 VD   SV +    L  +DG   R R   A++ +Q GCD  CTFC++PY RG   
Sbjct: 110 ETETVQVDDIMSVTETAGHL--IDGFGTRSR---AYVQVQNGCDHRCTFCIIPYGRGNSR 164

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           S     VVD+ ++L+D G  E+ L G ++ +W G  L         ++  L  +  L RL
Sbjct: 165 SVPAGVVVDQIKRLVDKGFNEVVLTGVDLTSW-GADLPATPKLGDLVMRILRLVPDLPRL 223

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R ++    ++ + L++A      LMP+LHL +Q G D ILK M RRH   +  +     R
Sbjct: 224 RISSIDSIEVDENLMQAIATEPRLMPHLHLSLQHGDDMILKRMKRRHLRDDAIRFAQEAR 283

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           ++RPD+   +D I GFP ET+  F  +M LV++        F YS R GTP + M   V+
Sbjct: 284 ALRPDMTFGADIIAGFPTETEAMFENSMKLVEECDLTWLHVFPYSARPGTPAARMP-AVN 342

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
                ER   L+     Q     +A  GQ+  VL+E         +GR+     V     
Sbjct: 343 GAAIKERAARLRAAGERQVQRHLEAQAGQMHAVLMENP------HMGRTAQFTEVTFAVP 396

Query: 444 NHNIGDIIKVRITDVKISTLYG 465
               GDI++ RIT +  + L  
Sbjct: 397 QVE-GDIVQTRITGISGTQLTA 417


>gi|110598860|ref|ZP_01387113.1| conserved hypothetical protein [Chlorobium ferrooxidans DSM 13031]
 gi|110339521|gb|EAT58043.1| conserved hypothetical protein [Chlorobium ferrooxidans DSM 13031]
          Length = 433

 Score =  324 bits (832), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 118/455 (25%), Positives = 201/455 (44%), Gaps = 33/455 (7%)

Query: 21  CIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKV 80
            +     F+ S GC  N  DS R+     + G     + D+AD I++NTC   E A E+ 
Sbjct: 2   TMTKHNVFLLSLGCSKNTVDSERLMAQAEASGITFTETADEADTILINTCAFIEDAKEES 61

Query: 81  YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140
            +        K      G    V + GC+ +   +E+      V+   G +    +   L
Sbjct: 62  IAETLAAIGKKTE----GKVQRVYMMGCLTELYRKELHEEMEEVDGFFGTRELPEVLAAL 117

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
                           E+ ++R S++           A+L I EGC++ C+FC +P  RG
Sbjct: 118 GAVYR-----------EEFYDRRSLL------TPPHYAYLKIAEGCNRACSFCSIPKIRG 160

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
             IS+   Q++ EA  L   GV E+ ++ Q++ +  G  L+G K   +DL+  LS+++  
Sbjct: 161 RYISQPPEQLLREAALLKSAGVRELNVIAQDI-SLYGYDLEG-KSLLNDLVLRLSDMEFD 218

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
             +R   ++P      +I    +   +  YL +P+Q G+DRIL+SMNR     E  ++I+
Sbjct: 219 -WIRLFYAYPVGFPLEVIDTMHERANICNYLDIPLQHGNDRILRSMNRGINKAETIKLIE 277

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
            IR   PDI + +  I G+PGET ++F   +  V++  + +   F Y      P   + E
Sbjct: 278 TIREKNPDIRLRTTMIAGYPGETREEFEELLQFVEESRFDRLGCFPYCHEEHAPSFKLEE 337

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV- 439
            +    K ER+  L +         N    G+ I+VLI++   E    +GR+ +    V 
Sbjct: 338 SLTMEEKRERVAELMELQESISAENNRVFEGKTIKVLIDQI--EADTALGRTEYDAPEVD 395

Query: 440 ------LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                 LN++   +G      ITD     L+G ++
Sbjct: 396 NECILDLNNQPVTVGSFCMAEITDSGAYELHGRVI 430


>gi|83949966|ref|ZP_00958699.1| MiaB-like tRNA modifying enzyme [Roseovarius nubinhibens ISM]
 gi|83837865|gb|EAP77161.1| MiaB-like tRNA modifying enzyme [Roseovarius nubinhibens ISM]
          Length = 419

 Score =  324 bits (832), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 125/432 (28%), Positives = 198/432 (45%), Gaps = 34/432 (7%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
             + GC++N Y++  M+++    G            +V+NTC +  +A  K    + R+R
Sbjct: 7   FATLGCRLNAYETEAMKELSAEAGLSGA--------VVVNTCAVTAEAVRKARQEIRRLR 58

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL--LERARFG 146
                  +E  D  ++V GC AQ E E        V+ V+G     +      L     G
Sbjct: 59  -------REHPDARLIVTGCAAQTEPET-FTAMEEVDAVIGNTEKMQPETWKGLAADFIG 110

Query: 147 KR---VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           +     VD   SV +    L  +DG   R R   A++ +Q GCD  CTFC++PY RG   
Sbjct: 111 ETEMLQVDDIMSVTETAGHL--IDGFGTRSR---AYVQVQNGCDHRCTFCIIPYGRGNSR 165

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           S     VVD+ ++L+D G  E+ L G ++ +W G  L         ++  L  +  L RL
Sbjct: 166 SVPAGVVVDQIKRLVDRGYNEVVLTGVDLTSW-GADLPATPRLGDLVMRILKLVPDLPRL 224

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R ++    ++ + L++A      LMP+LHL +Q G D ILK M RRH   +  +  +  R
Sbjct: 225 RISSIDSIEVDENLMQAIATEPRLMPHLHLSLQHGDDMILKRMKRRHLRDDAIRFAEEAR 284

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
            +RP++   +D I GFP ET+  F  ++ LV+  G      F YS R GTP + +  QV+
Sbjct: 285 RLRPEMTFGADIIAGFPTETEAHFENSLRLVEDCGLTWLHVFPYSRREGTPAARIPNQVN 344

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
             V  +R   L++    +  +     VG+   VL+E         +GR+     V   + 
Sbjct: 345 GRVIRDRAARLRQAGEARVATHLAEQVGRAHRVLMENP------RMGRTEQFTEVEFATD 398

Query: 444 NHNIGDIIKVRI 455
               G I+ VRI
Sbjct: 399 QPE-GQIVDVRI 409


>gi|77462893|ref|YP_352397.1| MiaB-like radical SAM protein [Rhodobacter sphaeroides 2.4.1]
 gi|77387311|gb|ABA78496.1| MiaB-like Radical SAM protein [Rhodobacter sphaeroides 2.4.1]
          Length = 436

 Score =  324 bits (832), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 117/448 (26%), Positives = 191/448 (42%), Gaps = 28/448 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
              + S GC   + DS R+     ++GY        AD +++NTC   + A  +    +G
Sbjct: 12  TIGMVSLGCPKALVDSERILTRLRAEGYAISPDYAGADAVIVNTCGFLDSAKVESLEAIG 71

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                         +  V+V GC+  AE + I    P V  V GP  Y ++ + +  A  
Sbjct: 72  EALR---------ENGRVIVTGCLG-AEPDYITGAHPKVLAVTGPHQYEQVLDAVHGA-- 119

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                       D F  L    G     R   ++L I EGC+  C FC++P  RG   SR
Sbjct: 120 -------VPPAPDPFVDLLPATGVRLTPRHF-SYLKISEGCNHTCRFCIIPDMRGRLASR 171

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
               V+ EA KL++ GV E+ ++ Q+ +A+       EK     L   L  +   VRL Y
Sbjct: 172 PERAVLREAEKLVEAGVRELLVISQDTSAYGTDWKGPEKFPILPLARELGRLGAWVRLHY 231

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
              +P      LI    +  +++PYL +P Q     +LK M R   A      I   R  
Sbjct: 232 VYPYPHV--RELIPLMAE-GLVLPYLDIPFQHAHPEVLKRMARPAAAARTLDEIAAWRRD 288

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P+IA+ S FIVG+PGET+ +F+  +D +D+    +   F+Y    G   + + + V   
Sbjct: 289 CPEIALRSTFIVGYPGETEAEFQTLLDWLDEAQLDRVGCFQYENVAGARSNALPDHVAPE 348

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG--KLVGRSPWLQSVVLNSK 443
           VK ER     +K +        A VG+ IEV++++  ++    +    +P +   +   +
Sbjct: 349 VKQERWDRFMEKAQAISEVKLAAKVGRRIEVIVDEVDEDGATCRTKADAPEIDGNLFIDE 408

Query: 444 NHN---IGDIIKVRITDVKISTLYGELV 468
                  GDI+ V + +     ++G  V
Sbjct: 409 GFRGLAPGDILTVEVEEAGEYDIWGRPV 436


>gi|307719795|ref|YP_003875327.1| hypothetical protein STHERM_c21230 [Spirochaeta thermophila DSM
           6192]
 gi|306533520|gb|ADN03054.1| hypothetical protein STHERM_c21230 [Spirochaeta thermophila DSM
           6192]
          Length = 442

 Score =  324 bits (832), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 118/450 (26%), Positives = 202/450 (44%), Gaps = 27/450 (6%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           F+++  GC  N  D+  +  +    G+E V    +ADLIV+NTC     A E+       
Sbjct: 4   FYLEPLGCAKNQVDAEVIISLLLDAGWELVEDPAEADLIVVNTCGFIRDAKEESLETAFL 63

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
            R           D  +++ GC+AQ  G E+      V+ V+G      + +   +   G
Sbjct: 64  FRE-------RFPDKRILLTGCLAQRYGRELGEEMEEVDGVLGNADLSAVVDAARQVMEG 116

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           +RVV T  +      R + V          +A++ + EGCD  C++C +P  RG   SR 
Sbjct: 117 RRVVWTPQAR-----RPAHVRRKRLLSFPGSAYVKVAEGCDNRCSYCAIPLIRGRFWSRP 171

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
             ++V E + L+  G+ E+ L+ Q++ +  GK   G   +   LL  + E++G   +R  
Sbjct: 172 EEEIVQEVKGLLGEGIREVNLVAQDLGS-YGKERGG---SLFGLLERILELQGDFWVRLL 227

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
             HP      +++  G    L+PY+ LP Q  S R+L+ M RR  A  Y +++  +R   
Sbjct: 228 YIHPDHFPWEILRLMGQDRRLLPYVDLPFQHVSARLLRRMGRRGDAERYAELVHALRDSL 287

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ----- 381
           PD+ + S F++GFPGE ++D  A    ++++    A  F YSP  GTP      +     
Sbjct: 288 PDVVVRSTFLLGFPGEEEEDLDALARFLEEVRLDWAGFFVYSPEEGTPAEAWHREEGRKA 347

Query: 382 -VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQ 436
            V       R   L++          +  VG+  EVL+E+  + +   + RS    P + 
Sbjct: 348 GVRLERAERRKEDLERLQEGITGERLERWVGRECEVLVEERIEGEDMALARSAFQAPEVD 407

Query: 437 S-VVLNSKNHNIGDIIKVRITDVKISTLYG 465
             VV++ +    G +++ R+       L G
Sbjct: 408 GLVVVHGEGLEPGRVVRARVLKRNGIDLEG 437


>gi|86742221|ref|YP_482621.1| hypothetical protein Francci3_3540 [Frankia sp. CcI3]
 gi|123737129|sp|Q2J750|RIMO_FRASC RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|86569083|gb|ABD12892.1| SSU ribosomal protein S12P methylthiotransferase [Frankia sp. CcI3]
          Length = 523

 Score =  324 bits (832), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 121/492 (24%), Positives = 201/492 (40%), Gaps = 53/492 (10%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +R  + + GC  N  DS  +     + G+E V+   DAD +++NTC   + A +     L
Sbjct: 7   RRVALITLGCSRNEVDSEELAARLGADGWELVSDAADADAVLVNTCGFVDAAKKDSIDAL 66

Query: 85  GRIRNLKNSRIKEGG-------DLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLP 137
                L+      G           VV  GC+A+  G E+    P  + V+G   Y  + 
Sbjct: 67  LAADGLRAGGGPSGPADGAGPGPRAVVAVGCLAERYGTELAESLPEADAVLGFDAYPNIA 126

Query: 138 ELLERARFGKRVVDTDYSVEDKFERLSIVDGGYN----------------RKR---GVTA 178
             L     G  V    +S  D+   L I                      R+R   G  A
Sbjct: 127 THLAAVLAGTPV--PAHSPRDRRTMLPITPVDRAAPALPPAAVSTGAVPLRRRLTAGPVA 184

Query: 179 FLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK 238
            L I  GCD+ C FC +P  RG  +SRS   V+ EA  L   G  E+ L+ +N  +  GK
Sbjct: 185 VLKISSGCDRRCAFCAIPSFRGSHVSRSPDDVLAEAEWLAGQGARELVLVSENSTS-YGK 243

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
            L G+      LL  L+ + G+VR+R     P +M   L++       L PYL L  Q  
Sbjct: 244 DL-GDLRALEKLLPQLAAVSGIVRVRTVYLQPAEMRPSLLEVLLTTPGLAPYLDLSFQHA 302

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           S  +L+ M R   +  +  ++ R R++ P++   S+ IVGFPGET +D     + ++   
Sbjct: 303 SPPVLRRMRRFGGSGHFLDLLARARALAPELGARSNVIVGFPGETPEDVDILAEFLEAAE 362

Query: 359 YAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI 418
                 F YS   GT  + + +++ + +   R + +   + +   +  DA +G  ++VL+
Sbjct: 363 LDAVGVFGYSDEEGTEAAGLTDKIPDELIERRRVRVTDLVEQLTAARADARIGSRVQVLV 422

Query: 419 EKHGK--------------EKGKLVGRSPWLQSVVLNSKNHN-------IGDIIKVRITD 457
           E+                 + G +V  SP       +            +GD+++ R+  
Sbjct: 423 EEVAGGLATGCAAHQQAEVDGGCVVRLSPG--GAADDGPERLGVGDLVGVGDLVEARVVA 480

Query: 458 VKISTLYGELVV 469
            +   L  E + 
Sbjct: 481 TEGVDLIAEFIA 492


>gi|297171740|gb|ADI22732.1| 2-methylthioadenine synthetase [uncultured verrucomicrobium
           HF0500_27H16]
          Length = 439

 Score =  324 bits (832), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 116/424 (27%), Positives = 204/424 (48%), Gaps = 20/424 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++  V + GC++N  ++  + D    +GY+ V     ADL V+NTC +   A  K  S +
Sbjct: 9   RKATVHTLGCRLNQSETNLIRDQLVDRGYDIVPFGATADLAVINTCTVTRTADSKCRSAI 68

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            +         +     +  V GC +Q   +EI      V+V++G Q    + + +  A+
Sbjct: 69  RQF-------TRRNPAAITAVVGCYSQMGYKEI-SEIEGVDVIIGNQDKLNVLDYVGEAK 120

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
               V+  D    D F      +  +N++    A L IQ+GCD  CTFC++P+ RG   S
Sbjct: 121 NEVPVIVRDRIDRDDFTISFAGELPFNQR----ANLKIQDGCDFMCTFCIIPFARGRARS 176

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R    +++EA+ L+  GV E+ + G N+  ++  G         D++ +L ++ GL R+R
Sbjct: 177 RDFQNLLEEAQNLVARGVRELIITGVNIGTYKHSGE-----GIVDIVDALDDLDGLTRIR 231

Query: 265 YTTSHPRDMSDCLIKAHGDLDV-LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
            ++  P  + + L +   D    L+PYLH+P+Q+GSD IL++M R+++  E+   + +  
Sbjct: 232 ISSIEPTTIPEILFERMRDPSHALLPYLHIPLQAGSDEILEAMRRKYSVQEFLDFLAKAD 291

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           +  PD+ I +D +VGFPGETD+ F  T        +A    F YS R GTP +   + V 
Sbjct: 292 AAVPDLCIGTDLMVGFPGETDEHFNQTCQTFLDGPFAYCHVFTYSERNGTPAAKRDDHVP 351

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
              +  R   L++    ++  F +  + +   VL E     +    G +P    VV+   
Sbjct: 352 VPERKRRSAHLRRLNATRRHDFYERFLDREFPVLFETL--REDTWPGYTPNYIRVVVPDT 409

Query: 444 NHNI 447
             ++
Sbjct: 410 GEDL 413


>gi|288802855|ref|ZP_06408292.1| 2-methylthioadenine synthetase [Prevotella melaninogenica D18]
 gi|288334672|gb|EFC73110.1| 2-methylthioadenine synthetase [Prevotella melaninogenica D18]
          Length = 449

 Score =  324 bits (832), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 119/453 (26%), Positives = 205/453 (45%), Gaps = 22/453 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +     + GC++N  ++       ++ G       + AD+ ++NTC + E A  K    +
Sbjct: 10  KTAKFYTLGCKLNFSETSTFARTLYNMGVREAKKTEQADICLINTCSVTEVADHKCRQII 69

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL---- 140
            R+       +++     V+V GC AQ E   +  +   V++V+G      L + L    
Sbjct: 70  HRM-------VRQNPGAFVIVTGCYAQLESATVA-KIEGVDLVLGSNEKADLVQYLSDAW 121

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
            +    K           K + +       +R      FL +Q+GC+ FCT+C +P+ RG
Sbjct: 122 NKVDTAKEETSEGEYHSVKTKDIKSFQASCSRGNRTRYFLKVQDGCNYFCTYCTIPFARG 181

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
              + ++  +V +A +    G  EI L G N+    G        +F DL+ +L +++G+
Sbjct: 182 FSRNPTIQSLVAQAEEAAREGGKEIVLTGVNI----GDFGKTTGESFLDLVKALDKVEGI 237

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R R ++  P  + D LI    +    MP+ H+P+QSGSD +L+ M+RR+    + + I 
Sbjct: 238 QRFRISSLEPDLIDDELIAYCAESRAFMPHFHIPLQSGSDEVLELMHRRYDTALFARKIK 297

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
            I+   PD  I  D +VG  GE  + F    + +D +   Q   F YS R GT   ++  
Sbjct: 298 LIKEKMPDAFIGVDVMVGSRGERPEYFEDCYNFLDSLPVTQLHVFPYSERPGTAALSIPY 357

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440
            VD+  K  R   L K   E+  +F  A +GQ  +VL EK  + K  + G +     V L
Sbjct: 358 VVDDREKKHRAHKLLKLSDEKTRAFYAAHIGQEADVLFEKAARGKA-MHGFTDNYIRVEL 416

Query: 441 N---SKNHNIGDIIKVRITD--VKISTLYGELV 468
           +   +K      I++VR+ +     S+L  EL+
Sbjct: 417 SPDQAKEEYDNQILRVRLGEFNFDQSSLKAELL 449


>gi|46581553|ref|YP_012361.1| putative tRNA modifying protein [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|81404006|sp|Q726F7|RIMO_DESVH RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|46450975|gb|AAS97621.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|311235197|gb|ADP88051.1| MiaB-like tRNA modifying enzyme YliG [Desulfovibrio vulgaris RCH1]
          Length = 430

 Score =  324 bits (831), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 118/447 (26%), Positives = 189/447 (42%), Gaps = 30/447 (6%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
            +  S GC  N  D+  +         + V  +  AD++++NTC     A E+    +  
Sbjct: 4   VYSISLGCPKNRVDTEHLLGSLGVA-VQPVEHLSRADVVLINTCGFILPAVEESVRTIVE 62

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEG-EEILRRSPIVNVVVGPQTYYRLPELLERARF 145
             +  +   K     L+ VAGC+    G +E+    P V+V +  Q     P +L  A  
Sbjct: 63  TIDDLSGLRK---RPLLAVAGCLVGRYGAKELASELPEVDVWLPNQDITAWPAMLAHALK 119

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            +  V                 G         A+L I +GC   C+FC +P  RG   S 
Sbjct: 120 LEGAV---------------TPGRLLSTGPSYAWLKISDGCRHNCSFCTIPSIRGGHRST 164

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
               +  EAR L+  GV E+ L+ Q+V AW G+ + G     + LL  L  + GL RLR 
Sbjct: 165 PADVLEREARDLVAQGVRELVLVAQDVTAW-GEDI-GAPHGLATLLERLLPVPGLARLRL 222

Query: 266 TTSHPRDMSDCLIKAHGDLDV-LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
              +P  ++  L+    D    L+PY  +P+Q     IL  M R       R++++R+R 
Sbjct: 223 MYLYPAGLTRELLGFMRDAGAPLVPYFDVPLQHAHPDILSRMGRPFARDP-RRVVERVRD 281

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             PD A+ +  IVGFPGETD+ + A    V++  +     F Y    GTP + M EQV++
Sbjct: 282 FFPDAALRTSLIVGFPGETDEHYAALTSFVEETRFTHMGVFAYRAEEGTPAAEMPEQVED 341

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRS----PWLQSV- 438
            VK  R   L +   E          G   +VL++   +E  G   GR+    P +  + 
Sbjct: 342 RVKEWRRDALMEVQAEISEELLAVHEGTRQQVLVDAPHEEWPGLHTGRTWFQAPEIDGIT 401

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYG 465
            ++      G +++  I + +   L  
Sbjct: 402 YVSGPGVEPGALVEADIVETRTYDLVA 428


>gi|332024358|gb|EGI64557.1| CDKAL1-like protein [Acromyrmex echinatior]
          Length = 539

 Score =  324 bits (831), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 119/459 (25%), Positives = 202/459 (44%), Gaps = 35/459 (7%)

Query: 21  CIVP--QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAE 78
            I+P  Q  +VK++GC  N  D+  M     S GY        ADL +LN+C ++  A +
Sbjct: 55  SIIPGTQTIYVKTWGCTHNSSDTEYMTGQLASYGYNLTEDKLKADLWLLNSCTVKSPAED 114

Query: 79  KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPE 138
           +  + +   + +            VVVAGCV Q   +    +      V+G Q   R+ E
Sbjct: 115 QFRNEIEYGKKI---------GKHVVVAGCVPQGAPKSSFLQG---LSVIGVQQIDRVVE 162

Query: 139 LLERARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197
           ++E    G  V       +  K    + ++    R+  +   + I  GC   CT+C   +
Sbjct: 163 VVEETLKGNTVRFLQQKKDLGKKTGGASLNLPKVRRNPLIEIIAINTGCLNQCTYCKTKH 222

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257
            RG   S    ++V+ A++  + GVCE+ L  ++  A  G+ +         LL+ L ++
Sbjct: 223 ARGELGSYPPEEIVERAKQAFEEGVCELWLTSEDTGA-YGRDI---GTNLPKLLWQLIDV 278

Query: 258 K--------GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
                    G+    Y   H  +M+  L         +  +LH+PVQSGSD +L  M R 
Sbjct: 279 IPDGCMMRIGMTNPPYILEHLDEMTKIL-----RHSKVYSFLHIPVQSGSDHVLADMKRE 333

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369
           +T  E+  +++ +    P + I++D I GFP ET+ DF  TM L  K  +   F  ++  
Sbjct: 334 YTCAEFEHVVNFLSERVPGLTIATDIICGFPTETEMDFEETMTLCQKYKFPSLFINQFFS 393

Query: 370 RLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV 429
           R GTP + M  +V       R   L +    Q        VG I +VL+ +   +K   V
Sbjct: 394 RPGTPAARMP-KVPAQKVKTRTKRLSEFF--QSYEPYGHKVGLIQKVLVTEVSHDKQHYV 450

Query: 430 GRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           G + + + V++  K   +G +I VRI +    ++ G+ +
Sbjct: 451 GHNKFYEQVLIPLKQGYMGKMIDVRIIEATKFSMKGDPI 489


>gi|332885636|gb|EGK05882.1| MiaB-like tRNA modifying enzyme [Dysgonomonas mossii DSM 22836]
          Length = 436

 Score =  324 bits (831), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 120/426 (28%), Positives = 201/426 (47%), Gaps = 17/426 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++    + GC++N  ++  +       G  R    + AD+ V+NTC + E A +K    +
Sbjct: 10  KKAAYLTLGCKLNFAETSAIGRQLSQVGVRRSRDGEVADICVINTCSVTEFADKKCRQAV 69

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            ++       IKE     V+V GC AQ + E+I      V++V+G +    +   L+  +
Sbjct: 70  RKM-------IKENPGAYVIVTGCYAQLKPEDIAG-IKGVDIVLGSEQKLDVVAYLDELK 121

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
              + V    S  +K +         +R R    FL +Q+GCD FC+FC +P+ RG   +
Sbjct: 122 KKDKGV-VHTSKTNKIKSFVPSCSQDDRTR---YFLKVQDGCDYFCSFCTIPFARGRSRN 177

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
            S+  +V +A+++ + G  EI L G N+    G        TF DL+ +L E++G+ R R
Sbjct: 178 GSIESMVQQAKEVAEKGGKEIVLTGVNI----GDFGRTTGETFFDLVKALDEVEGIERYR 233

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
            ++  P  ++D +I+         P+ H+P+QSGSD +LK M RR+    +R  +++I+S
Sbjct: 234 ISSIEPNLLTDEIIQFVAQSKRFAPHFHIPLQSGSDAVLKLMRRRYDTALFRHKVEKIKS 293

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           V PD  I  D IVG  GETD+ F      ++ + ++Q   F YS R  T    +  +VD 
Sbjct: 294 VMPDAFIGVDVIVGTRGETDEYFDEAKAFLESLDFSQLHVFTYSERPNTQALKIDHEVDP 353

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
             K  R   L     E+  +F  +  G   +VL E H +    + G +     V      
Sbjct: 354 KTKHARCKALLDLSDEKLQAFYRSQQGTKRKVLFE-HTQHDSVMYGFTENYIKVETQYHA 412

Query: 445 HNIGDI 450
           H   +I
Sbjct: 413 HKANEI 418


>gi|325270230|ref|ZP_08136837.1| Fe-S oxidoreductase [Prevotella multiformis DSM 16608]
 gi|324987531|gb|EGC19507.1| Fe-S oxidoreductase [Prevotella multiformis DSM 16608]
          Length = 450

 Score =  324 bits (831), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 120/454 (26%), Positives = 203/454 (44%), Gaps = 23/454 (5%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +     + GC++N  ++       ++ G       + AD+ ++NTC + E A  K    +
Sbjct: 10  KTARFYTLGCKLNFSETSTFARTLYNMGVREAKKGEQADICLINTCSVTEVADHKCRQVI 69

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL---- 140
            R+       +++     V+V GC AQ E   +      V++V+G      L + L    
Sbjct: 70  HRM-------VRQNPGAFVIVTGCYAQLESAAVAG-IEGVDLVLGSNEKADLIQYLSDAW 121

Query: 141 ERARFGKRVVDTDYSVED-KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
            +   GK   +        + + +       +R      FL +Q+GC+ FCT+C +PY R
Sbjct: 122 NKVEAGKETTEGQAEYHSVRTKDIRSFQASCSRGNRTRYFLKVQDGCNYFCTYCTIPYAR 181

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G   + +++ +V +A +    G  EI L G N+    G   +    +F DL+ +L  ++G
Sbjct: 182 GFSRNPTIASLVSQAEEAAREGGKEIVLTGVNI----GDFGETTGESFLDLVKALDRVEG 237

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           + R R ++  P  + D LI         MP+ H+P+QSGSD +LK M+RR+    +   I
Sbjct: 238 IRRFRISSLEPDLIDDDLIAYCARSRAFMPHFHIPLQSGSDEVLKLMHRRYDTALFAHKI 297

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
             I+ + PD  I  D +VG  GE  + F      +D +   Q   F YS R GT   ++ 
Sbjct: 298 RFIKEMMPDAFIGVDVMVGSRGERPEYFEDCYRFLDSLPVTQLHVFPYSERPGTSALSIP 357

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV 439
             VD+  K  R   L K   E+  +F  A +GQ  +VL EK  + K  + G +     V 
Sbjct: 358 YVVDDREKKRRAHRLLKLSDEKTRAFYAARIGQEADVLFEKAARGKA-MHGFTDNYIRVE 416

Query: 440 LN---SKNHNIGDIIKVRITD--VKISTLYGELV 468
           L    ++      I++VR+       S+L  EL+
Sbjct: 417 LPPGQAREEYDNQIVRVRLGGFNFDQSSLKAELL 450


>gi|51473604|ref|YP_067361.1| tRNA-methylthiotransferase (MiaB protein) [Rickettsia typhi str.
           Wilmington]
 gi|51459916|gb|AAU03879.1| tRNA-methylthiotransferase (MiaB protein) [Rickettsia typhi str.
           Wilmington]
          Length = 421

 Score =  324 bits (831), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 116/436 (26%), Positives = 200/436 (45%), Gaps = 32/436 (7%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           + ++GC++N+Y+S  +       G +        ++ + NTC + + A ++    + + +
Sbjct: 14  IVTFGCRLNIYESEIIRKNLELSGLD--------NVAIFNTCAVTKSAEKQARQAIRKAK 65

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
                  K   DL ++V GC AQA   ++      V+ V+G +          +    K 
Sbjct: 66  -------KNNPDLKIIVTGCSAQANP-KMYGNMSEVDKVIGNEEKLLSHYY--QITDQKI 115

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
            V+   SV++    L     G +R     AF+ +Q GCD  CTFC++PY RG   S  + 
Sbjct: 116 SVNDIMSVKETACHLVSSFDGKSR-----AFIQVQNGCDHNCTFCIIPYGRGRSRSTPIG 170

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
            +V + + L+  G  E+ + G +V A  G  L G       +   L+ +  L R+R ++ 
Sbjct: 171 TIVAQVKHLVLKGFKEVVITGVDVTA-YGSDLPGSPTFAQMIKRVLNLVPELKRIRLSSI 229

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
              ++ D   +       +MP+ H+ +QSG D ILK M RRH      +   ++R++RP+
Sbjct: 230 DIAEVDDEFFELIAYSKRIMPHFHISLQSGDDMILKRMKRRHNRASVIEFCQKLRAIRPE 289

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           ++  +D I GFP ET++ F  T  L+ +        F YS R GTP   M  QV +N++ 
Sbjct: 290 VSFGADIIAGFPTETNEMFENTRKLILEAELQYLHVFPYSEREGTPAIRMP-QVPKNIRK 348

Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIG 448
           ER   L++    Q   F    +GQ +E+LIE +       V  +     V L+ K   IG
Sbjct: 349 ERAKILRQDGYNQLTEFFKKHIGQKVELLIENNN------VAHTENFIPVKLD-KYLAIG 401

Query: 449 DIIKVRITDVKISTLY 464
            I K  +  ++   + 
Sbjct: 402 QIFKAELVGIENGYMK 417


>gi|84503500|ref|ZP_01001555.1| MiaB-like Radical SAM protein [Oceanicola batsensis HTCC2597]
 gi|84388178|gb|EAQ01131.1| MiaB-like Radical SAM protein [Oceanicola batsensis HTCC2597]
          Length = 417

 Score =  324 bits (831), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 127/442 (28%), Positives = 196/442 (44%), Gaps = 36/442 (8%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
             + GC++N Y++  M+++  + G E        + +V+NTC +  +A  K    + R+R
Sbjct: 7   FATLGCRLNAYETEAMKELAAAAGVE--------NAVVVNTCAVTAEAVRKARQDIRRLR 58

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA----- 143
                  +E     ++V GC AQ E E        V+ VVG     +       A     
Sbjct: 59  -------RENPQARIIVTGCAAQTEPETFAA-MDEVDHVVGNSEKMQAETWKGFAPDLIG 110

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
              + +VD   SV +    L     G+ R R   A++ +Q GCD  CTFC++PY RG   
Sbjct: 111 ETERVIVDDIMSVTETAGHLI---DGFGRHR---AYVQVQNGCDHRCTFCIIPYGRGNSR 164

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           S     VVD+ ++L+D G  E+ L G ++ +W G  L         +   L  +  L RL
Sbjct: 165 SVPTGVVVDQIKRLVDRGFNEVVLTGVDLTSW-GADLPATPRLGDLVRRILRLVPDLPRL 223

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R ++    +    L++A      LMP+LHL +Q+G D ILK M RRH   +  +  +  R
Sbjct: 224 RISSIDSIEADPALMEAIATEPRLMPHLHLSLQAGDDMILKRMKRRHLRDDAIRFCEEAR 283

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
            +RP++   +D I GFP ETD+ F  ++ L+++ G      F YSPR GTP + M  QV 
Sbjct: 284 RLRPEMTYGADIIAGFPTETDEMFENSLRLIEECGLTWLHVFPYSPRPGTPAARMP-QVR 342

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
                ER   L+     Q  +     VG    VL E         +GR+     V  +  
Sbjct: 343 GPAIKERAARLRAAGERQVAAHLAGQVGTERTVLTEGP------RMGRTEQFAEVRFDRD 396

Query: 444 NHNIGDIIKVRITDVKISTLYG 465
               G +I  RI      +L  
Sbjct: 397 MPE-GRLITARIAAHDGLSLIA 417


>gi|85706248|ref|ZP_01037343.1| RNA modification enzyme, MiaB-family protein [Roseovarius sp. 217]
 gi|85669412|gb|EAQ24278.1| RNA modification enzyme, MiaB-family protein [Roseovarius sp. 217]
          Length = 458

 Score =  324 bits (831), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 118/452 (26%), Positives = 196/452 (43%), Gaps = 33/452 (7%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
              + S GC   + DS R+     ++GY        AD +++NTC   + A  +    +G
Sbjct: 28  TIGMVSLGCPKALVDSERILTRLRAEGYGISADYAGADAVIVNTCGFLDSAKAESLEAIG 87

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
              +          +  V+V GC+  AE   I    P V  V GP  Y ++ + +  A  
Sbjct: 88  EALS---------ENGRVIVTGCLG-AEPAYITGVHPRVLAVTGPHQYEQVLDAVHLA-- 135

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                       D F  L    G     R   ++L I EGC+  C FC++P  RG   SR
Sbjct: 136 -------VPPSPDPFIDLLPASGVSLTPRHY-SYLKISEGCNHKCKFCIIPDMRGKLQSR 187

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAW----RGKGLDGEKCTFSDLLYSLSEIKGLV 261
               V+ EA KL+++GV E+ ++ Q+ +A+    R     G +   +DL   L  +   V
Sbjct: 188 PAHAVIREAAKLVESGVKELLVISQDTSAYGVDIRHAEERGHRAHITDLARDLGSLGAWV 247

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           RL Y   +P       + A G   +++PYL +P Q     +L+ M R   A      I  
Sbjct: 248 RLHYVYPYPHVRDLIPLMAEG---LVLPYLDIPFQHAHPEVLRRMARPAAAARTLDEIAA 304

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
            R   P+IA+ S FIVG+PGET+ +F+  +D +D+    +   F+Y    G   + + + 
Sbjct: 305 WRRDCPEIALRSTFIVGYPGETEAEFQVLLDWLDEAQLDRVGCFQYENVAGARSNALPDH 364

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK---GKLVGRSPWLQSV 438
           V   VK ER     +K +    +   A VGQ +EV++++   +     +    +P +   
Sbjct: 365 VAAEVKQERWDRFMEKAQAISEAKLAAKVGQRMEVIVDEIDADGIATCRTKADAPEIDGN 424

Query: 439 VLNSKNHN---IGDIIKVRITDVKISTLYGEL 467
           +   +      +GDI+ V + +     L+G L
Sbjct: 425 LFIDEGTEGIAVGDIVTVVVDEAGEYDLWGRL 456


>gi|53715140|ref|YP_101132.1| putative Fe-S oxidoreductase [Bacteroides fragilis YCH46]
 gi|52218005|dbj|BAD50598.1| putative Fe-S oxidoreductase [Bacteroides fragilis YCH46]
          Length = 439

 Score =  324 bits (831), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 119/454 (26%), Positives = 205/454 (45%), Gaps = 20/454 (4%)

Query: 17  IVDQCIVPQRFFVK-SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREK 75
           ++D  +   +  V  + GC++N  ++  +  +    G       + ADL ++NTC + E 
Sbjct: 1   MIDTTVFQDKTAVYYTLGCKLNFSETSTIGKILREAGVRTARKGEKADLCIVNTCSVTEM 60

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135
           A +K    + R+       +K+     VVV GC AQ +  ++  +   V+VV+G +    
Sbjct: 61  ADKKCRQAIHRL-------VKQHPGAFVVVTGCYAQLKPGDVA-KIEGVDVVLGAEQKKD 112

Query: 136 LPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
           L + L      +       + +D            +R      FL +Q+GCD FC++C +
Sbjct: 113 LLQYLGDLHKHEGGEAYTTATKDIRSFAP----SCSRGDRTRFFLKVQDGCDYFCSYCTI 168

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
           P+ RG   + +++ +V++AR+    G  EI L G N+    G        TF DL+ +L 
Sbjct: 169 PFARGRSRNGTIASLVEQARQAAAEGGKEIVLTGVNI----GDFGKSTGETFFDLVKALD 224

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
            ++G+ R R ++  P  ++D +I+        MP+ H+P+QSGSD +L+ M RR+    +
Sbjct: 225 RVEGIERYRISSIEPNLLTDEIIEYVSRSRSFMPHFHIPLQSGSDEVLQLMRRRYGTELF 284

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
              I +I+ V PD+ I  D IVG  GET   F    + +  +   Q   F YS R GT  
Sbjct: 285 ASKIAKIKEVMPDVFIGVDVIVGTRGETAGYFEKAYEFIHGLDVTQLHVFSYSERPGTQA 344

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWL 435
             +   V    K +R   L     E+  +F    +GQ + VL+EK  K    + G +   
Sbjct: 345 LKIDHVVTPEEKHQRSQRLLALSDEKTKAFYARYIGQTMPVLMEKP-KAGALMHGFTANY 403

Query: 436 QSVVLNSKNHNIGDIIKVRITDVKI--STLYGEL 467
             V + S       ++ V + D     + L G +
Sbjct: 404 IRVEVESDAALDNKVVNVLLGDFNEEGTALKGTI 437


>gi|269215587|ref|ZP_06159441.1| MiaB tRNA modifying enzyme-like protein [Slackia exigua ATCC
           700122]
 gi|269131074|gb|EEZ62149.1| MiaB tRNA modifying enzyme-like protein [Slackia exigua ATCC
           700122]
          Length = 446

 Score =  324 bits (831), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 116/445 (26%), Positives = 195/445 (43%), Gaps = 22/445 (4%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
               + GC  N  D+  M+    S G+  V+    A  +V+NTC   + A E+    +  
Sbjct: 19  VSFLTLGCAKNEVDTADMKRAVVSAGFGVVDDPGQASAVVVNTCSFIQTAIEESIDAILE 78

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
              L N      GD  ++V+GC+    G ++       +  V       + ++LE     
Sbjct: 79  AAALDNVAR---GDAKLIVSGCLPSRFGADLETELEEASAFVPCAGESDIADVLESLFGP 135

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           +   D                G +       A++ I +GCD FC+FC +PY RG   S +
Sbjct: 136 QPEPDAAL-------------GAHLFDGNAAAYVKIGDGCDHFCSFCSIPYIRGRYRSFT 182

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
             ++ +   + I  GV EITL+ Q+   W G  L+G++ T + L+ +L+        R  
Sbjct: 183 YERIREAVARQISYGVREITLIAQDTGRW-GCDLEGDR-TLAWLIDALASEFADTWFRVM 240

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
              P  ++D L+        +  YL +PVQ  S+R+L SM R   A  +  +    R   
Sbjct: 241 YLEPEGVTDELLDVMASRPNVCRYLDIPVQHASERVLVSMRRSGDARRFLDLFAHARERI 300

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
             IA+ +  I GFPGETD+DF   +D +++        F YS   GT  + M  Q+DE  
Sbjct: 301 EGIAMRTTVIAGFPGETDEDFSKLLDFLEQADLDYVGVFPYSREDGTRAARMEGQIDEET 360

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLI---EKHGKEKGKLVGRSPWLQSVVLNSK 443
           K  R   ++        S   + +G +++V++   E+ G+  G+ + ++P +  VV    
Sbjct: 361 KLARAQEVRDLCDALAFSRVSSRIGDVMDVVVLGREEDGRVYGRAMCQAPEVDGVVYLDG 420

Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468
               GD++K RI D     + GE+V
Sbjct: 421 G-TAGDVVKARIVDTLAYEMEGEIV 444


>gi|120601285|ref|YP_965685.1| MiaB-like tRNA modifying enzyme YliG [Desulfovibrio vulgaris DP4]
 gi|238065336|sp|A1V9Z2|RIMO_DESVV RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|120561514|gb|ABM27258.1| SSU ribosomal protein S12P methylthiotransferase [Desulfovibrio
           vulgaris DP4]
          Length = 430

 Score =  324 bits (831), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 118/447 (26%), Positives = 189/447 (42%), Gaps = 30/447 (6%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
            +  S GC  N  D+  +         + V  +  AD++++NTC     A E+    +  
Sbjct: 4   VYSISLGCPKNRVDTEHLLGSLGVA-VQPVEHLSRADVVLINTCGFILPAVEESVRTIVE 62

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEG-EEILRRSPIVNVVVGPQTYYRLPELLERARF 145
             +  +   K     L+ VAGC+    G +E+    P V+V +  Q     P +L  A  
Sbjct: 63  TIDDLSGLRK---RPLLAVAGCLVGRYGAKELASELPEVDVWLPNQDITAWPAMLAHALK 119

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            +  V                 G         A+L I +GC   C+FC +P  RG   S 
Sbjct: 120 LEGAV---------------TPGRLLSTGPSYAWLKISDGCRHNCSFCTIPSIRGGHRST 164

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
               +  EAR L+  GV E+ L+ Q+V AW G+ + G     + LL  L  + GL RLR 
Sbjct: 165 PADVLEREARDLVAQGVRELVLVAQDVTAW-GEDI-GAPHGLATLLERLLPVPGLARLRL 222

Query: 266 TTSHPRDMSDCLIKAHGDLDV-LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
              +P  ++  L+    D    L+PY  +P+Q     IL  M R       R++++R+R 
Sbjct: 223 MYLYPAGLTRELLGFMRDAGAPLVPYFDVPLQHAHPDILSRMGRPFARDP-RRVVERVRD 281

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             PD A+ +  IVGFPGETD+ + A    V++  +     F Y    GTP + M EQV++
Sbjct: 282 FFPDAALRTSLIVGFPGETDEHYAALTSFVEETRFTHMGVFAYRAEEGTPAAEMPEQVED 341

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRS----PWLQSV- 438
            VK  R   L +   E          G   +VL++   +E  G   GR+    P +  + 
Sbjct: 342 RVKEWRRDALMEVQAEISEELLAVHEGTRQQVLVDAPHEEWPGLHTGRTWFQAPEIDGIT 401

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYG 465
            ++      G +++  I + +   L  
Sbjct: 402 YVSGPGVEPGALVEADIVETRTYDLVA 428


>gi|315424979|dbj|BAJ46654.1| tRNA modifying enzyme [Candidatus Caldiarchaeum subterraneum]
          Length = 432

 Score =  324 bits (830), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 131/458 (28%), Positives = 233/458 (50%), Gaps = 32/458 (6%)

Query: 14  VSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIR 73
           +     Q ++PQ+ + + YGC  N  D      +   QGY  V   ++AD +VL TC ++
Sbjct: 1   MESNPHQRVMPQKVYAEVYGCSANQADGEIALGILQKQGYIMVERPNEADYVVLVTCAVK 60

Query: 74  EKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTY 133
           +  A+++   + +  +L            ++VAGC+A  E E + R +P   V++ P++ 
Sbjct: 61  KPTADRMIHRIKKFSSL---------GPRLIVAGCMATGEAERVRRVAPEA-VLLPPRSI 110

Query: 134 YRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK-FCTF 192
             +   +E   F                  + +     RK  V A + + EGC    C+F
Sbjct: 111 TEVSAAIEGHGFDG--------------GGTKLGLPRLRKNPVIAIVPVSEGCRWSRCSF 156

Query: 193 CVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLY 252
           C+VP +R    S  +  VVDE RK ++ G  E+ L  Q++ ++   GL+  +    +L+ 
Sbjct: 157 CIVPRSRPGYESYPVRAVVDEVRKAVNEGCREVWLTSQDMGSY---GLESGRNLLPELIE 213

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRRH 310
           S++ ++G    R    +P  +   L K       + +  ++H+PVQSGSD++LK MNR H
Sbjct: 214 SVNSLEGKFYTRIGMMNPIYLKPILQKLVKAYSGEKIYKFIHVPVQSGSDKVLKDMNRGH 273

Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370
           +   +  +++  R   P I +S+D IVG+P ETD+DF  T+ LV+K   A     +Y PR
Sbjct: 274 SVQLFYHVVEAFRRRFPSITVSTDLIVGYPTETDEDFEQTLKLVEKTRPAVVNVSRYFPR 333

Query: 371 LGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG 430
            GTPG  + + +  +V A R+  L   L + Q+  N+  +G + EVLI + GK+ GK++G
Sbjct: 334 PGTPGEGL-KTLPHHVVARRVSELNDLLSKIQLESNEHWLGWVGEVLINEVGKK-GKMMG 391

Query: 431 RSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           R+   + +VL++   ++G  ++  + DV+ + L G ++
Sbjct: 392 RNFAYRPIVLDAPRESLGRFVEAEVVDVEKNYLLGRVL 429


>gi|325294065|ref|YP_004279929.1| methylase protein [Agrobacterium sp. H13-3]
 gi|325061918|gb|ADY65609.1| putative methylase protein [Agrobacterium sp. H13-3]
          Length = 424

 Score =  324 bits (830), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 119/438 (27%), Positives = 192/438 (43%), Gaps = 28/438 (6%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
             V ++GC++N Y+S  M       G          + +++NTC +  +A  +    +  
Sbjct: 4   VEVITFGCRLNTYESEVMRAEAEKAGLN--------NAVLVNTCAVTGEAVRQARQAI-- 53

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
                    ++     ++V GC AQ E ++     P V+ V+G +   +         FG
Sbjct: 54  -----RRARRDNPHARIIVTGCAAQTE-KQTFAEMPEVDAVLGNEEKLKSASYRALPDFG 107

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRG-VTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
               +    V D     +          G V AF+ +Q GCD  CTFC++PY RG   S 
Sbjct: 108 VSA-EEKLRVNDIMSIKATAPQMVKHIDGHVRAFIQVQNGCDHRCTFCIIPYGRGNSRSV 166

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            +  VV++AR+L+++G CEI L G +  +  G  L GE          L ++  ++RLR 
Sbjct: 167 PMGAVVEQARRLVESGYCEIVLTGVDATS-YGADLPGEPSLGLLAKTLLKQVPEILRLRL 225

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
           ++    +    L+         MP+LHL +Q G D ILK M RRH   +  +    +RS+
Sbjct: 226 SSIDSIEADHHLMDLIAGEARFMPHLHLSLQHGDDMILKRMKRRHLRADAIRFCHEVRSL 285

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
           RPDIA  +D I GFP E ++ F     L ++ G +    F YSPR GTP + M  Q+D  
Sbjct: 286 RPDIAFGADMIAGFPTENEEMFENAATLAEECGISSLHVFPYSPRAGTPAARMP-QLDRA 344

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445
           +  ER   L+++    ++      VG    +L+E  G         +     VV  + + 
Sbjct: 345 LVKERAARLRERGEALRLVHLQNMVGSTQTILVENTG------FAHTDNFTLVV--APDL 396

Query: 446 NIGDIIKVRITDVKISTL 463
               + +V IT      L
Sbjct: 397 LPRTLAQVEITGHNGKHL 414


>gi|325856357|ref|ZP_08172073.1| tRNA methylthiotransferase YqeV [Prevotella denticola CRIS 18C-A]
 gi|325483541|gb|EGC86513.1| tRNA methylthiotransferase YqeV [Prevotella denticola CRIS 18C-A]
          Length = 477

 Score =  324 bits (830), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 119/454 (26%), Positives = 201/454 (44%), Gaps = 23/454 (5%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +     + GC++N  ++       ++ G       + AD+ ++NTC + E A  K    +
Sbjct: 37  KTARFYTLGCKLNFSETSTFARTLYNMGVREAKKSEQADICLINTCSVTEVADHKCRQVI 96

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R+       +++     V+V GC AQ E   +      V++V+G      L + L  A 
Sbjct: 97  HRM-------VRQNPGAFVIVTGCYAQLESAAVAG-IEGVDLVLGSNEKADLIQYLSDAW 148

Query: 145 FGKRVVDTDYSVEDKFERLSIVD-----GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
                     +   ++  +   D        +R      FL +Q+GC  FCT+C +PY R
Sbjct: 149 NRPEAGKEHGASPAEYHSVRTKDIRSFQPSCSRGNRTRYFLKVQDGCSYFCTYCTIPYAR 208

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G   + +++ +V +A +    G  EI L G N+    G   +     F DL+ +L  ++G
Sbjct: 209 GFSRNPTIASLVSQAEEAAHEGGREIVLTGVNI----GDFGETTGERFLDLVKALDRVEG 264

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           + R R ++  P  + D LI         MP+ H+P+QSGSD +LK M+RR+    +   I
Sbjct: 265 IRRYRISSLEPDLIDDELIAYCAQSRAFMPHFHIPLQSGSDEVLKLMHRRYDTALFAHKI 324

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
             I+ + PD  I  D +VG  GE  + F      ++ +   Q   F YS R GT   ++ 
Sbjct: 325 RLIKEMMPDAFIGVDVMVGSRGERLEYFEDCYRFLESLPVTQLHVFPYSERPGTSALSIP 384

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV 439
             VD+  K  R   L K   E+  +F  A +GQ  +VL EK  + K  + G +     V 
Sbjct: 385 YVVDDREKKRRSHRLLKLSDEKTHAFYAAHIGQEADVLFEKAPRGK-VMHGFTDNYIRVE 443

Query: 440 LN---SKNHNIGDIIKVRITD--VKISTLYGELV 468
           L+   ++      I++VR+       S+L  EL+
Sbjct: 444 LSPAQAEEAYDNQIVRVRLGGFSFDQSSLKAELL 477


>gi|297559628|ref|YP_003678602.1| RNA modification enzyme, MiaB family [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296844076|gb|ADH66096.1| RNA modification enzyme, MiaB family [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
          Length = 480

 Score =  324 bits (830), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 116/477 (24%), Positives = 198/477 (41%), Gaps = 47/477 (9%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +   + + GC  N  DS  +     + G++ V    +AD+ ++NTC   + A +     L
Sbjct: 5   RTVSLVTLGCARNEVDSEELAGRLSAGGWDLVEGDTEADVTIVNTCGFIDAAKQDSIETL 64

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
                             VV AGC+A+  G E+ +  P    V+G   Y  + + L+   
Sbjct: 65  LEAAE---------NGGRVVAAGCMAERYGSELAQALPEAQ-VIGFDDYAAITDRLDDVV 114

Query: 145 FGKRVVDTDYSVEDKFERLSIVDG----------------------------GYNRKR-- 174
            G+ +V  D         +S  +                                R+R  
Sbjct: 115 AGRTLVPHDPRDRRTLLPISPAERDASQAHVPGHASFAESAGAEGTELPYRASVPRRRLV 174

Query: 175 -GVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVN 233
            G  A L I  GCD+ CTFC +P  RG  +SR    +V EA  L   GV E+ L+ +N  
Sbjct: 175 GGPVANLKIASGCDRRCTFCAIPTFRGAYLSRRPDDIVREAEWLASEGVREVFLVSENST 234

Query: 234 AWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHL 293
           +  GK L G+      LL  L+ ++GL R+R +   P ++   L+        ++PY  L
Sbjct: 235 S-YGKDL-GDVRALEKLLPRLAAVEGLERVRVSYLQPAEVRPGLVDVLTGTPGVVPYFDL 292

Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
             Q  S  +L+ M R      + +++D +R   P+    S+FIVGFPGET+ +F   +  
Sbjct: 293 SFQHASGTLLRRMRRFGDRERFLELLDTVRKRAPEAGSRSNFIVGFPGETEAEFEDLVSF 352

Query: 354 VDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQI 413
           + +        F YS   GT       ++ + V AER+  L +   E      +  +G  
Sbjct: 353 LSEARLDAIGVFGYSDEEGTEAFGHEGKLPDEVVAERVDRLNRLSEELMTQRAEERIGSE 412

Query: 414 IEVLIE---KHGKEKGKLVGRSPWLQS-VVLNSKNHNIGDIIKVRITDVKISTLYGE 466
           + VL+E   + G  +G+   ++P +    +L  +   +GD+++  +     + L  E
Sbjct: 413 VTVLVETVLEDGAYEGRAEHQAPEVDGSTILYGEGLAVGDLVRATVIQSAGADLIAE 469


>gi|121610173|ref|YP_997980.1| ribosomal protein S12 methylthiotransferase [Verminephrobacter
           eiseniae EF01-2]
 gi|238055295|sp|A1WMV5|RIMO_VEREI RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|121554813|gb|ABM58962.1| MiaB-like tRNA modifying enzyme YliG [Verminephrobacter eiseniae
           EF01-2]
          Length = 462

 Score =  324 bits (830), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 120/473 (25%), Positives = 198/473 (41%), Gaps = 51/473 (10%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R  + S GC   + DS  +     ++GYE   +   ADL+++NTC   + A ++    +G
Sbjct: 11  RIGMVSLGCPKALTDSELILTQLSAEGYETSKTFQGADLVIVNTCGFIDDAVKESLDTIG 70

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEE----ILRRSPIVNVVVGPQTYYRLPELLE 141
                            V+V GC+    G +    + +  P V  V GPQ   ++ + + 
Sbjct: 71  EALAENGK---------VIVTGCLGARTGADGGNMVRQLHPSVLAVTGPQATQQVLDAVH 121

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGG---YNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
           R               D F  L     G           A+L I EGC+  CTFC++P  
Sbjct: 122 RNLP---------KPHDPFIDLVPGGMGIAGLKLTPRHYAYLKISEGCNHRCTFCIIPTL 172

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDL 250
           RG  +SR +  V++EAR L   GV E+ ++ Q+ +A+      R    DG+  K    +L
Sbjct: 173 RGALVSRPIGAVLNEARALFAGGVKELLVISQDSSAYGVDMQYRTGFWDGQPLKTRLLEL 232

Query: 251 LYSLSEI----KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306
           + +L  +       VRL Y   +P   +   + A G    ++PYL +P+Q     +L+ M
Sbjct: 233 VQALGALAEPYGAWVRLHYVYPYPSVDALIPLMAQG---RVLPYLDVPLQHSHPEVLRRM 289

Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
            R  +     + I R R V P+I I S FIVGFPGET  +F   +D +      +   F 
Sbjct: 290 KRPASGERNLERIQRWREVCPEIVIRSSFIVGFPGETQAEFEHLLDFLRAARIDRVGCFA 349

Query: 367 YSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE---KHGK 423
           YS   G   +++   +   ++ ER             +     VG  ++VLI+     G+
Sbjct: 350 YSDVSGAVANDLPGMLPMPLRQERRARFMAVAEALSSAKLQRRVGATMQVLIDAAPGLGR 409

Query: 424 EK--GKLVGRSPWLQSVVL------NSKNHNIGDIIKVRITDVKISTLYGELV 468
           +   G+    +P +   V        SK   +G+  + RI  V+   L  + +
Sbjct: 410 KGGVGRSYADAPEIDGAVHLLPPEKISKTLKVGEFTQARIVGVRGHDLLAQPI 462


>gi|288927648|ref|ZP_06421495.1| 2-methylthioadenine synthetase [Prevotella sp. oral taxon 317 str.
           F0108]
 gi|288330482|gb|EFC69066.1| 2-methylthioadenine synthetase [Prevotella sp. oral taxon 317 str.
           F0108]
          Length = 446

 Score =  323 bits (829), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 121/437 (27%), Positives = 199/437 (45%), Gaps = 17/437 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +     + GC++N  ++     M    G    N  + AD+ ++NTC + E A  K    +
Sbjct: 10  KTAAYYTLGCKLNFSETSTFGQMLQDMGVRTANEGEPADICLINTCSVTEVADHKCRQII 69

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R+       ++E     VVV GC AQ E E++      V++V+G      L + L  A 
Sbjct: 70  HRM-------VRENPGAFVVVTGCYAQLESEKV-SAIEGVDLVLGSNEKANLIQYLNDAW 121

Query: 145 F-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             G+R            + +       +R      FL +Q+GCD FCT+C +P+ RG   
Sbjct: 122 ADGQRGKALHRHFSMNTKDIKTFAPSCSRGNRTRYFLKVQDGCDYFCTYCTIPFARGFSR 181

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           + S++ +V +A    ++G  EI L G N+  ++G    G    F DL+ +L +++G+ R 
Sbjct: 182 NPSIASLVQQAHDAANDGGKEIVLTGVNIGEFKG----GGNERFIDLVKALDQVEGIQRF 237

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R ++  P  ++D LI         MP+ H+P+QSGSD +LK M RR+    +   +  I+
Sbjct: 238 RISSIEPNLLTDELIDYCASSRAFMPHFHIPLQSGSDEVLKLMQRRYDTALFAHKVQLIK 297

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              P+  I  D +VG  GE    F    D +  +  +Q   F YS R GT    +   V+
Sbjct: 298 QRIPNAFIGVDVMVGSRGEEPAYFEECYDFLKSLDISQLHVFPYSERPGTAALRIPYVVN 357

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN-- 441
           +  K  R   L +   E+  +F  + +G    VL EK  K K  + G +P    V L   
Sbjct: 358 DAEKRRRSKLLLELSDEKLETFYASQIGSQSLVLFEKAAKGKA-MHGFTPNYVRVELPAS 416

Query: 442 -SKNHNIGDIIKVRITD 457
            +K+     ++ VR+T 
Sbjct: 417 LAKDEFDNQLLPVRLTQ 433


>gi|163782456|ref|ZP_02177454.1| hypothetical protein HG1285_06700 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882489|gb|EDP75995.1| hypothetical protein HG1285_06700 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 410

 Score =  323 bits (829), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 119/400 (29%), Positives = 206/400 (51%), Gaps = 18/400 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    + GC+MN +D+  M   F   GYE V+  + AD+ V+NTC +           L 
Sbjct: 2   KVSFVTLGCRMNQFDTDLMRSRFAESGYEVVDFEEPADVYVINTCTVTSGGDRSSRQALY 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R +       +   + LVV  GC AQ + EE+      V++VVG      + +L+E A  
Sbjct: 62  RAK-------RRNPNALVVATGCYAQVKPEELAS-LEEVDLVVGNTHKDEILKLVEEALE 113

Query: 146 GK--RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            +  +VV  +   + + +    V      +     F+ +QEGC+KFCTFCV+P+ RG   
Sbjct: 114 NRDRKVVVGEIFRQKELKNFDTVLYFEESR----PFIKVQEGCNKFCTFCVIPFARGKVR 169

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           S    +V+++ R L   G  E+ L G  + +  G  +     +  +LL  + +++G+  +
Sbjct: 170 SAPKEKVIEQVRLLALQGFEEVVLSGTQL-SQYGWDV---GSSLYELLLEVLKVEGIKLV 225

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R ++ H +++SD L++       + P+ HL +QSGSDR+LK M R +   E+R++++ I 
Sbjct: 226 RLSSMHVKEISDELLELVVSERRIAPHFHLSLQSGSDRVLKLMERGYGREEFREVVEFIV 285

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
             RP+ A+ +D I GFPGE+++DFR T+  V++I +A    F YS R  T  S    +V 
Sbjct: 286 KRRPESAVGTDVIAGFPGESEEDFRDTLKFVEEIPFAYLHVFPYSDRPFTKASRFGNKVP 345

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK 423
           E VK ER+  L +    ++  F +  +G+ +   +  +G+
Sbjct: 346 EGVKKERVKLLGELDEIKRKEFYEGNMGRKLRATVLGNGR 385


>gi|262068261|ref|ZP_06027873.1| Fe-S oxidoreductase [Fusobacterium periodonticum ATCC 33693]
 gi|291377999|gb|EFE85517.1| Fe-S oxidoreductase [Fusobacterium periodonticum ATCC 33693]
          Length = 439

 Score =  323 bits (829), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 117/445 (26%), Positives = 226/445 (50%), Gaps = 20/445 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++    + GC++N Y++  +++    +GYE V     +D+ ++N+C +   A  K  + L
Sbjct: 5   KKVAFHTLGCKVNQYETESIKNQLIKRGYEEVPFDHKSDIYIINSCTVTSIADRKTRNML 64

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R +       K   +  V++ GC AQ    EIL     V+ V+  +    +   +    
Sbjct: 65  RRAK-------KINPEAKVIITGCYAQTNSREIL-EIEDVDFVIDNKNKSNIVNFVGAIE 116

Query: 145 --FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
               +R  + +   E +++           +    A++ IQ+GC+ FC++C +P+ RG  
Sbjct: 117 DISFEREKNGNIFQEKEYQEYEFATL----REMTRAYVKIQDGCNHFCSYCKIPFARGKS 172

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR    ++ E  KL+++G  E+ L+G +++A  G+  + EK +F  LL  + +IK L R
Sbjct: 173 RSRKKENILKEIEKLVEDGFKEVILIGIDLSA-YGEDFE-EKDSFESLLEDILKIKDLKR 230

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R  + +P  ++D  I    +   LMP+LH+ +QS  D +LK+M R + +   R+ + ++
Sbjct: 231 VRIGSVYPDKITDKFIDLFKN-KNLMPHLHISLQSCDDTVLKNMRRNYGSSLIRESLLKL 289

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           +S   ++  ++D IVGFP E D  F+ T +++ +I ++    F+YS R GT  SNM  +V
Sbjct: 290 KSKVKNMEFTADVIVGFPKEDDSMFQNTRNVIKEIEFSGLHIFQYSDREGTIASNMDGKV 349

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
           D   K +R   L +  +E  +   +  +G+++E  +    +++G+  G S     V   S
Sbjct: 350 DAKTKKQRADSLDQLKQEMILESREKYLGKVLE--VLVEEEKEGEYFGYSQNYMRVKFKS 407

Query: 443 KN-HNIGDIIKVRITDVKISTLYGE 466
           +  + I ++I V+I  ++   L GE
Sbjct: 408 EEKNLINELINVKIKSIENDILIGE 432


>gi|320008186|gb|ADW03036.1| MiaB-like tRNA modifying enzyme YliG [Streptomyces flavogriseus
           ATCC 33331]
          Length = 492

 Score =  323 bits (829), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 123/487 (25%), Positives = 206/487 (42%), Gaps = 53/487 (10%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +   + + GC  N  DS  +     + G++ V +  DAD+ V+NTC   E A +     L
Sbjct: 5   RTVALVTLGCARNEVDSEELAGRLAADGWDLVENATDADVAVVNTCGFVEAAKKDSVDAL 64

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
               +LK+     G    VV  GC+A+  G+++    P  + V+G   Y  + + L+   
Sbjct: 65  LEANDLKD----HGRTQAVVAVGCMAERYGKDLAEALPEADGVLGFDDYADISDRLQTIL 120

Query: 145 FGKRVVDTDYSVEDKFERLSI-----------------------------------VDGG 169
            G   +   ++  D+ + L I                                       
Sbjct: 121 NGG--IHASHTPRDRRKLLPISPAERQDAAVALPGHAQEITPAPADLPEGIAPVSGPRAP 178

Query: 170 YNRKRG--VTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITL 227
             R+ G    A + +  GCD+ C+FC +P  RG  +SR  S V+ E R L + GV E+ L
Sbjct: 179 LRRRLGTSPVASVKLASGCDRRCSFCAIPSFRGSFVSRRPSDVLGETRWLAEQGVKEVML 238

Query: 228 LGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL 287
           + +N N   GK L G+      LL  L+++ G+ R+R +   P +M   LI        +
Sbjct: 239 VSEN-NTSYGKDL-GDIRLLETLLPELADVDGIERIRVSYLQPAEMRPGLIDVLTSTPKV 296

Query: 288 MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDF 347
            PY  L  Q  + ++L+SM R      + +++D IRS  P     S+FIVGFPGET+ D 
Sbjct: 297 APYFDLSFQHSAPKVLRSMRRFGDTDRFLELLDTIRSKAPQAGARSNFIVGFPGETEADV 356

Query: 348 RATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFND 407
                 +          F YS   GT       ++D +V AERL  + +   E      +
Sbjct: 357 AELERFLTGARLDAIGVFGYSDEDGTEAVGYENKLDADVIAERLAHISQLAEELTSQRAE 416

Query: 408 ACVGQIIEVLIE--KHGKEKGKLVGR----SPWLQS-VVLNSKNHNI-GDIIKVRITDVK 459
             VG+ ++VL+E  +  ++    VGR    +P     V+  ++   + G +++ +    +
Sbjct: 417 ERVGETLQVLVESVEDEEDGPVAVGRAAHQAPETDGQVIFTTREGLVPGLMVEAKAVGTE 476

Query: 460 ISTLYGE 466
              L  E
Sbjct: 477 GVDLVAE 483


>gi|126465996|ref|YP_001041105.1| RNA modification protein [Staphylothermus marinus F1]
 gi|126014819|gb|ABN70197.1| RNA modification enzyme, MiaB family [Staphylothermus marinus F1]
          Length = 429

 Score =  323 bits (829), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 128/450 (28%), Positives = 241/450 (53%), Gaps = 27/450 (6%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + ++ ++++YGC +N  D   M+ +  S+G++ V  + +AD I++NTC +R     K+  
Sbjct: 1   MARKIYIETYGCALNRGDEYIMKTVLVSRGHKLVEEITEADTIIINTCTVRYDTELKMIK 60

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +  +  + + + K      +++AGC+A+A+  +I + +P  ++V    +    P++   
Sbjct: 61  RIKELYRIASEQNK-----KLIIAGCMAKAQPYKIHKIAPKTSLV----SPQNAPKIWIA 111

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
                +V         K ER   + G Y  K+   A+L IQEGC   C+FC+V   R   
Sbjct: 112 VESDGQVFLL------KGERNRRILGTYVDKQ--IAYLPIQEGCLGNCSFCIVKNARRQL 163

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +S  ++++ +  ++L+  GV EI + GQ+  A  G  L G K    +LL  L  IKG   
Sbjct: 164 VSYPINKIKNTVKELVGKGVVEIEITGQDT-ASYGLDLYG-KQMLPNLLEELDGIKGNFM 221

Query: 263 LRYTTSHPR---DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           +R    +P    ++ D LI+   +   +  +LH+P+QSGSD++L+ M R++T  EYR+I+
Sbjct: 222 IRIGMMNPDTLANILDELIEVIKNSAHIYRFLHIPLQSGSDKVLRIMRRKYTVDEYREIV 281

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
             +R   P+I+I++D IVG PGE ++DF  T+D++ ++ + +     YS R  T  +++ 
Sbjct: 282 KILRKKIPEISIATDIIVGHPGEEEEDFEQTLDIIKELKFERVHPAVYSIRPNTYSASLR 341

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV 439
            Q+  +VK ER+L L K +    +  +   +G++++  I +H       +GR+     V+
Sbjct: 342 -QIPTSVKKERMLRLLKIIENVGLEVHRKYLGKVLDTFITEHS---NTWIGRTLNYIPVI 397

Query: 440 LNSKN-HNIGDIIKVRITDVKISTLYGELV 468
           + S+N  + G  +K++IT+     L G +V
Sbjct: 398 IFSENTLDFGKHVKIQITNATFYDLRGVIV 427


>gi|242281025|ref|YP_002993154.1| MiaB-like tRNA modifying enzyme YliG [Desulfovibrio salexigens DSM
           2638]
 gi|242123919|gb|ACS81615.1| MiaB-like tRNA modifying enzyme YliG [Desulfovibrio salexigens DSM
           2638]
          Length = 437

 Score =  323 bits (829), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 120/454 (26%), Positives = 199/454 (43%), Gaps = 34/454 (7%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           +   R +  S GC  N  D+ RM   F        ++ +++DL+++NTC     A E+  
Sbjct: 3   MTKTRIYTISLGCPKNRVDTERMLGAFGDN-MIAASTAEESDLVLINTCGFIGPATEESV 61

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             +       ++        ++ VAGC+    G ++  + P V++ +      + P L  
Sbjct: 62  DTILETA---DAIKDLNPRPVLAVAGCLVSRYG-KLTEQMPEVDLWLSTHELDQWPALAA 117

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           +A   +                 +V           A+L I EGC   C FC +P  RG 
Sbjct: 118 KALRKE---------------FPVVQQRAISTGPAYAYLKISEGCSHSCRFCTIPSIRGP 162

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
            +SR L  +V+EAR ++D GV E+ ++GQ+  A  G  LD ++     L+  L  +KG+ 
Sbjct: 163 HVSRKLDGLVEEARYILDQGVPELVIVGQDTTA-YGSDLDDKETNLRALIEKLLPLKGME 221

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDV-LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            LR    +P  ++D ++         L+PY  +P+Q     +L SM R       R++ID
Sbjct: 222 WLRLMYLYPAGLTDSMLSFLAQAGKPLLPYFDIPIQHAHPDVLSSMGRPFARDP-RKVID 280

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           R+R   PD  + +  IVG+PGETD+ F   +D V +  +     F Y P  GTP   M E
Sbjct: 281 RVRKHIPDAVLRTSIIVGYPGETDEHFNTLVDFVKETRFQNLGVFAYQPEEGTPAGEM-E 339

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGR----SPWL 435
           Q+ E ++ ER   L +   E      +  VG  I+VL+E+   E  G   GR    +P +
Sbjct: 340 QLPEELREERREILMEVQSEISREILEEKVGDTIQVLVEEPNDEWPGLFNGRVWFQAPEV 399

Query: 436 QSVVL-----NSKNHNIGDIIKVRITDVKISTLY 464
             +       +      G +++  I +V    L 
Sbjct: 400 DGITYVSAPEDGMELKAGMMVEAEIDNVTDYDLV 433


>gi|254521337|ref|ZP_05133392.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Stenotrophomonas
           sp. SKA14]
 gi|219718928|gb|EED37453.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Stenotrophomonas
           sp. SKA14]
          Length = 409

 Score =  323 bits (829), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 117/422 (27%), Positives = 193/422 (45%), Gaps = 41/422 (9%)

Query: 64  LIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPI 123
           ++V+NTC   + A  +    +G              +  V+V GC+ +   E+I    P 
Sbjct: 1   MVVVNTCGFIDSAVTESLDAIGEA---------MNQNGKVIVTGCLGKR-PEQIREAYPN 50

Query: 124 VNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQ 183
           V  V GPQ Y  + E +  A   K          D F  L + D G        A+L I 
Sbjct: 51  VLAVSGPQDYQSVMEAVHEALPPK---------HDPFVDL-VPDYGIKLTPRHYAYLKIS 100

Query: 184 EGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
           EGC+  C+FC++P  RG  +SR + +V+ EA +L+  GV E+ ++ Q+ +A+       E
Sbjct: 101 EGCNHKCSFCIIPSMRGKLVSRPVDEVLREAERLVRGGVRELLVVSQDTSAYGVDVKYAE 160

Query: 244 K--------CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPV 295
           K            +L   LSE+   VR+ Y   +P       + A    + ++PYL +P 
Sbjct: 161 KMWRDKAYQTRLKELCEGLSELDAWVRMHYVYPYPHVDEVVPLMA---ENRILPYLDIPF 217

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
           Q  S RIL+ M R     +  + +   R + PDI + S FIVGFPGET+ +F   +  +D
Sbjct: 218 QHASPRILRLMKRPGAVEKTLERVQNWRRIAPDITVRSTFIVGFPGETEAEFEELLSFLD 277

Query: 356 KIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIE 415
           +    +  +F YSP  G   +++ + V E VK ERL    +K  +   +  +A +G + +
Sbjct: 278 EAQLDRVGAFAYSPVEGATANDLPDAVPEEVKQERLARFMEKQAQISAARLEAKIGTVQQ 337

Query: 416 VLIEKHGKEKGKLVGRS----PWLQS-VVLNSKN---HNIGDIIKVRITDVKISTLYGEL 467
            L++    E    V RS    P +   V + + +     +G+ + V IT+     LYG+ 
Sbjct: 338 CLVDAI--EGDIAVARSKADAPEIDGLVHIQNADQVPLRVGEFVDVEITESDEHDLYGDA 395

Query: 468 VV 469
           + 
Sbjct: 396 LA 397


>gi|308274461|emb|CBX31060.1| hypothetical protein N47_E45720 [uncultured Desulfobacterium sp.]
          Length = 433

 Score =  323 bits (829), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 120/446 (26%), Positives = 212/446 (47%), Gaps = 18/446 (4%)

Query: 23  VPQRFFV-KSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           +P+  F+  + GC++N  +S  +       G+        AD+ ++NTC +  KA+ +  
Sbjct: 1   MPK--FISTTLGCKVNQCESESISKHLVLSGWLSAEDGTGADVCIINTCTVTAKASMQSR 58

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             + +        I+   +  ++V GC A+ E +E+ ++   V+ ++G +  +++  L  
Sbjct: 59  QAIRKA-------IRLNPEAKIIVTGCYAETESDEL-KKINGVHHIIGQKEKHKILSLAN 110

Query: 142 RARF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
                G  +   D   ++            NR R   AFL IQ+GC+ FCT+C+VPY RG
Sbjct: 111 NCFSDGNPMPCNDELFDENGFMRLPALHSENRTR---AFLKIQDGCEAFCTYCIVPYARG 167

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
              S     V++  + +   G  E+ L G ++    G  L   K +   LL  L  +  +
Sbjct: 168 KSRSMPFETVIESIKNIKKAGHREVVLSGIHIG-KYGLDLSP-KTSLLSLLNLLDSLDII 225

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R ++  P ++   +I      D++ P+ H+P+QSG + ILK M R +T+  ++ +I 
Sbjct: 226 DRIRISSIEPNELVPEIISLAAKSDIICPHFHIPLQSGDNEILKKMRRPYTSEFFKDLIL 285

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
            I +  PD AI  D + GFPGETD+ F+ T  L++ +       F +SPR  T  +NM  
Sbjct: 286 NINNHMPDAAIGVDILAGFPGETDEAFQNTYSLINDLPVTYLHVFPFSPRKNTLAANMAG 345

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVV 439
           +V  ++   R   L+K    ++  F    VG  I VLIE+  + +   L G SP    V+
Sbjct: 346 RVPADIVKSRCAILRKLGSLKKAGFYKKAVGTDINVLIEEKREPQNNLLKGLSPNYIPVL 405

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYG 465
           +N  +     I  V+I    ++ + G
Sbjct: 406 INGDDCMKNSIANVKIQRAYVNYVEG 431


>gi|265766970|ref|ZP_06094799.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacteroides sp. 2_1_16]
 gi|263253347|gb|EEZ24823.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacteroides sp. 2_1_16]
          Length = 439

 Score =  323 bits (828), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 119/454 (26%), Positives = 204/454 (44%), Gaps = 20/454 (4%)

Query: 17  IVDQCIVPQRFFVK-SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREK 75
           ++D  +   +  V  + GC++N  ++  +  +    G       + ADL ++NTC + E 
Sbjct: 1   MIDTTVFQDKTAVYYTLGCKLNFSETSTIGKILREAGVRTARKGEKADLCIVNTCSVTEM 60

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135
           A +K    + R+       +K+     VVV GC AQ +  ++  +   V+VV+G +    
Sbjct: 61  ADKKCRQAIHRL-------VKQHPGAFVVVTGCYAQLKPGDVA-KIEGVDVVLGAEQKKD 112

Query: 136 LPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
           L + L      +       + +D            +R      FL +Q+GCD FC++C +
Sbjct: 113 LLQYLGDLHKHEGGEAYTTATKDIRSFAP----SCSRGDRTRFFLKVQDGCDYFCSYCTI 168

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
           P+ RG   + +++ +V++AR+    G  EI L G N+    G        TF DL+ +L 
Sbjct: 169 PFARGRSRNGTIASLVEQARQAAAEGGKEIVLTGVNI----GDFGKSTGETFFDLVKALD 224

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
            ++G+ R R ++  P  ++D +I+        MP+ H+P+QSGSD +L+ M RR+    +
Sbjct: 225 RVEGIERYRISSIEPNLLTDEIIEYVSRSRSFMPHFHIPLQSGSDEVLQLMRRRYGTELF 284

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
              I +I+ V PD  I  D IVG  GET   F    + +  +   Q   F YS R GT  
Sbjct: 285 ASKIAKIKEVMPDAFIGVDVIVGTRGETAGYFEKAYEFIHGLDVTQLHVFSYSERPGTQA 344

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWL 435
             +   V    K +R   L     E+  +F    +GQ + VL+EK  K    + G +   
Sbjct: 345 LKIDHVVTPEEKHQRSQRLLALSDEKTKAFYARHIGQTMPVLMEKP-KAGALMHGFTANY 403

Query: 436 QSVVLNSKNHNIGDIIKVRITDVKI--STLYGEL 467
             V + S       ++ V + D     + L G +
Sbjct: 404 IRVEVESDAALDNKVVNVLLGDFNEEGTALKGTI 437


>gi|254476913|ref|ZP_05090299.1| MiaB-like tRNA modifying enzyme [Ruegeria sp. R11]
 gi|214031156|gb|EEB71991.1| MiaB-like tRNA modifying enzyme [Ruegeria sp. R11]
          Length = 421

 Score =  323 bits (828), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 125/448 (27%), Positives = 202/448 (45%), Gaps = 39/448 (8%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
            P+     + GC++N Y++  M+++    G +        + +V+NTC +  +A  K   
Sbjct: 4   TPK---FTTLGCRLNAYETEAMKELSQQAGLQ--------NAVVVNTCAVTAEAVRKARQ 52

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            + ++R       +E  D  ++V GC AQ E E        V  V+G     +     + 
Sbjct: 53  EIRKLR-------RENPDAPIIVTGCAAQTEPETFAA-MEEVTQVIGNTEKMQPKTWQQI 104

Query: 143 AR-------FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
           A+         K  VD   SV +    L  +DG   R R   A++ +Q GCD  CTFC++
Sbjct: 105 AKGPDFIGTTEKVQVDDIMSVTETAGHL--IDGFGTRSR---AYVQVQNGCDHRCTFCII 159

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
           PY RG   S     VVD+ ++L+D G  E+ L G ++ +W G  L         ++  L 
Sbjct: 160 PYGRGNSRSVPAGVVVDQIKRLVDKGFNEVVLTGVDLTSW-GADLPATPKLGDLVMRILK 218

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
            +  L RLR ++    ++ + L++A      LMP+LHL +Q G D ILK M RRH   + 
Sbjct: 219 LVPDLPRLRISSIDSIEVDENLMQAIATESRLMPHLHLSLQHGDDLILKRMARRHLRDDA 278

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
            +  +    +RPD+   +D I GFP ETD  F  ++ LV          F YS R GTP 
Sbjct: 279 IRFTEEASRLRPDMTYGADIIAGFPTETDAHFENSLKLVKDCNLTWLHVFPYSKREGTPA 338

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWL 435
           + +  QV+  V  +R   L+     Q  +   A VG+  ++L+E         +GR+   
Sbjct: 339 ARIPNQVNGTVIKDRAARLRAAGDAQVQAHLAAQVGRTHQILMENP------HMGRTEQF 392

Query: 436 QSVVLNSKNHNIGDIIKVRITDVKISTL 463
             V   +     G I+    T ++ + L
Sbjct: 393 TEVTFATPQIE-GQIVTATPTGIQGAQL 419


>gi|222087519|ref|YP_002546056.1| hypothetical protein Arad_4404 [Agrobacterium radiobacter K84]
 gi|221724967|gb|ACM28123.1| conserved hypothetical protein [Agrobacterium radiobacter K84]
          Length = 424

 Score =  323 bits (828), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 123/443 (27%), Positives = 196/443 (44%), Gaps = 38/443 (8%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
             V ++GC++N Y+S  M       G          + I++NTC +  +A  +    +  
Sbjct: 4   VEVITFGCRLNTYESEVMRAEAEKAGLN--------NAILVNTCAVTGEAVRQARQAI-- 53

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT------YYRLPELL 140
                    ++     ++V GC AQ E +     +  V+ V+G +       Y  LP+  
Sbjct: 54  -----RRARRDNPHARIIVTGCAAQTEKQTFAEMA-EVDAVLGNEEKLTSASYRSLPDFG 107

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
             A    RV D         + +  +DG       V AF+ +Q GCD  CTFC++PY RG
Sbjct: 108 VSAEEKLRVNDIMSVRHTAPQMVKHIDGH------VRAFIQVQNGCDHRCTFCIIPYGRG 161

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
              S  +  VV +AR L+++G  EI L G +  +  G  L GE          L +I  +
Sbjct: 162 NSRSVPMGAVVSQARNLVESGYREIVLTGVDATS-YGGDLPGEPTLGLLAKTLLKQIPEI 220

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            RLR ++    +    L+    D    MP+LHL +Q G D ILK M RRH+  +  + I+
Sbjct: 221 RRLRLSSIDSIEADAHLLDLIADEPRFMPHLHLSLQHGDDMILKRMKRRHSRADAIRFIE 280

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
            +R +RP+++  +D I GFP ET   F   + L ++   A    F YSPR GTP + M  
Sbjct: 281 DVRRLRPEMSFGADMIAGFPTETGAMFENAVSLAEEAAIAHLHVFPYSPRPGTPAARMP- 339

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440
           Q+D  +  ER   L+   +    +  D+ VG    +L+E +G      +  +     V  
Sbjct: 340 QLDRALIKERAARLRAAGQRLHQAHLDSMVGTRQWLLVENNG------LAHTENFTLV-- 391

Query: 441 NSKNHNIGDIIKVRITDVKISTL 463
            +      D+++V IT      L
Sbjct: 392 AAPGLRPRDLVQVAITSHNGKHL 414


>gi|206901646|ref|YP_002251045.1| hypothetical protein DICTH_1216 [Dictyoglomus thermophilum H-6-12]
 gi|206740749|gb|ACI19807.1| conserved hypothetical protein [Dictyoglomus thermophilum H-6-12]
          Length = 417

 Score =  323 bits (828), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 123/432 (28%), Positives = 214/432 (49%), Gaps = 40/432 (9%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++    ++GC++N Y++  ++ +  + G+E V     ADLI +N+C +   A  K    +
Sbjct: 2   RKIAFYTFGCKVNQYETEHLKILARNLGFEVVPFGQKADLIFINSCAVTHVAERKARRLI 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             I+N          +  +++AGC ++    ++      V++++  +  +R         
Sbjct: 62  NFIKN-------HFPEAKIILAGCYSERL--KLSSEIIPVDLILDNKEKWR--------- 103

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
                          F       G  + +    A L IQ+GC+ FC++C+VPY RG E S
Sbjct: 104 ---------------FFGGDENSGFVSSEDRARAILKIQDGCNNFCSYCIVPYLRGRERS 148

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           + L +VV+EA+KL+++G  EI L G  +    G    G+K     LL +L EI GL ++R
Sbjct: 149 KPLDKVVEEAKKLVESGFKEIILTGIRLGT-YGSDW-GDKDALYKLLLNLFEIDGLAKIR 206

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
            ++  P D+++ LI+   D   L  + H+P+QSG D ILK MNRR+    +  II ++R 
Sbjct: 207 LSSIEPMDITENLIE-LADHPKLCKHWHIPLQSGDDDILKKMNRRYDTKYFENIIYKLRE 265

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             P+IAI++D IVG+P E++++F  T    +KIG+ +   F +SPR  T   ++   +  
Sbjct: 266 KVPNIAITTDIIVGYPEESEENFNNTYLFAEKIGFMRIHVFPFSPRPFTKAYDLKP-LPY 324

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
            +  +R   L K   +   ++    +G+ IEV++E+  KE     G +     V   S  
Sbjct: 325 EIITKRKEKLIKLSSKLWKTYVSKFLGKEIEVMVEE--KEGDVYRGTTENYIKVEFKSNL 382

Query: 445 HNI-GDIIKVRI 455
               GD  KVR+
Sbjct: 383 LLKEGDYTKVRL 394


>gi|296269078|ref|YP_003651710.1| MiaB-like tRNA modifying enzyme YliG [Thermobispora bispora DSM
           43833]
 gi|296091865|gb|ADG87817.1| MiaB-like tRNA modifying enzyme YliG [Thermobispora bispora DSM
           43833]
          Length = 473

 Score =  323 bits (827), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 118/480 (24%), Positives = 195/480 (40%), Gaps = 52/480 (10%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +   + + GC  N  DS  +     + G+   +  DD D+IV+NTC   + A ++    L
Sbjct: 5   RTVSLITLGCARNEVDSEELAARLEAAGWRLSD--DDPDVIVVNTCGFIDSAKKESIDTL 62

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
               +             VV AGC+A+  G+E+    P    V+    Y  + + L+   
Sbjct: 63  LAAAD---------SGAKVVAAGCLAERYGKELAEALPEAT-VISFDDYAEIGDRLDDVL 112

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKR------------------------------ 174
            G+ +         +   ++ VD    R R                              
Sbjct: 113 AGRPLRPHTPRDRRRLLPITPVDRSAARARIPGHGARADEPLPEGVAPASGPRTLRKRLT 172

Query: 175 -GVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVN 233
            G  A + +  GCD+ C FC +P  RG  +SR    ++ EAR L + GV EI L+ +N  
Sbjct: 173 GGPVAPIKLASGCDRRCAFCAIPAFRGAYVSRPPEDLIAEARWLAEQGVKEIVLVSENST 232

Query: 234 AWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHL 293
           +  GK L G+      LL  L+  +G+ R+R     P ++   LI+       + PY  L
Sbjct: 233 S-YGKDL-GDLRALERLLPKLAATEGIERVRVNYLQPAELRPSLIEMLTSTPGVAPYFDL 290

Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
             Q  S  +L+ M R   A  +  +++RIR   P+  I S+FIVGFPGET++DF      
Sbjct: 291 SFQHASGPLLRRMRRFGDARRFLDLLERIRERAPEAGIRSNFIVGFPGETEEDFAELKGF 350

Query: 354 VDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQI 413
           +++        F YS   GT      +++D++   ER+  L     E      +  +G  
Sbjct: 351 LEEARLDVIGVFGYSDEEGTEAYGFPDKLDQDTIDERVAELSALADELMAQRAEERIGTE 410

Query: 414 IEVLIEKHGKEKGKLVGRS----PWLQSVVLN--SKNHNIGDIIKVRITDVKISTLYGEL 467
           +E+LIE+   + G   GR+    P +   V          G I++      +   L   +
Sbjct: 411 LEILIEEDLGDGG-YEGRAAHQGPEVDGTVTVQGGSGLRPGQIVQAVAVGSEGVDLVARV 469


>gi|255011267|ref|ZP_05283393.1| hypothetical protein Bfra3_19146 [Bacteroides fragilis 3_1_12]
 gi|313149079|ref|ZP_07811272.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313137846|gb|EFR55206.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 439

 Score =  323 bits (827), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 118/454 (25%), Positives = 204/454 (44%), Gaps = 20/454 (4%)

Query: 17  IVDQCIVPQRFFVK-SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREK 75
           ++D  +   +  V  + GC++N  ++  +  +    G       + ADL ++NTC + E 
Sbjct: 1   MIDTTVFQDKTAVYYTLGCKLNFSETSTIGKILREAGVRTARKGEKADLCIVNTCSVTEM 60

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135
           A +K    + R+       +K+     VVV GC AQ +  ++  +   V+VV+G +    
Sbjct: 61  ADKKCRQAIHRL-------VKQHPGAFVVVTGCYAQLKPGDVA-KIEGVDVVLGAEQKKD 112

Query: 136 LPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
           L + L      +       + +D            +R      FL +Q+GCD FC++C +
Sbjct: 113 LLQYLGDLHKHEGGEAYTTATKDIRSFAP----SCSRGDRTRFFLKVQDGCDYFCSYCTI 168

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
           P+ RG   + +++ +V++AR+    G  EI L G N+    G        TF DL+ +L 
Sbjct: 169 PFARGRSRNGTVASLVEQARQAAAEGGKEIVLTGVNI----GDFGKSTGETFFDLVKALD 224

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
           +++G+ R R ++  P  ++D +I+        MP+ H+P+QSG D +L+ M RR+    +
Sbjct: 225 QVEGIERYRISSIEPNLLTDEIIEYVSTSRSFMPHFHIPLQSGCDEVLQLMRRRYGTELF 284

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
              I +I+ V PD  I  D IVG  GETD+ F    + +  +   Q   F YS R GT  
Sbjct: 285 ASKIAKIKEVMPDAFIGVDVIVGTRGETDEYFEKAYEFISGLDITQLHVFSYSERPGTQA 344

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWL 435
             +   V    K +R   L      +   F    +GQ + VL+EK  K    + G +   
Sbjct: 345 LKIDHVVTPEAKHQRSQRLLALSDGKTKDFYARHIGQTMPVLMEKP-KAGAPMHGFTANY 403

Query: 436 QSVVLNSKNHNIGDIIKVRITDV--KISTLYGEL 467
             V + S       ++ V + D     + L G +
Sbjct: 404 IRVEVESDQALDNQVVNVLLGDFNEDGTALKGTI 437


>gi|282881461|ref|ZP_06290135.1| MiaB-like protein [Prevotella timonensis CRIS 5C-B1]
 gi|281304687|gb|EFA96773.1| MiaB-like protein [Prevotella timonensis CRIS 5C-B1]
          Length = 455

 Score =  323 bits (827), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 116/439 (26%), Positives = 197/439 (44%), Gaps = 25/439 (5%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N  ++    ++    G   V   + AD+ ++NTC + E A  K    + R+   
Sbjct: 18  TLGCKLNFSETSTFAELLQGMGVRTVQCGEPADICLINTCSVTEVADHKCRQAIRRM--- 74

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               ++E     V+V GC AQ E + +  +   V++V+G      L + L  A   K  +
Sbjct: 75  ----VRENPGAFVIVTGCYAQLESQTV-SQIEGVDLVLGSNEKANLVQYLNDAWLQKSEL 129

Query: 151 DTDYSVED---------KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
                            K + +       +R      FL +Q+GC+ FCT+C +P+ RG 
Sbjct: 130 AATSPNHRPSLHTYQSVKTKDIKTFQPSCSRGNRTRYFLKVQDGCNYFCTYCTIPFARGF 189

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
             + S+  +V +A +    G  EI L G N+    G+  +    TF DL+ +L +++G+ 
Sbjct: 190 SRNPSIDFLVKQAEQAAAEGGKEIVLTGVNI----GEFGESTNETFLDLVKALDQVQGIK 245

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R R ++  P  + D LI         MP+ H+P+QSGSD +L+ M+R +    +   I  
Sbjct: 246 RFRISSLEPDLIDDELIDYCAHSRAFMPHFHIPLQSGSDEVLQLMHRHYDTALFAHKILY 305

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I+   PD  I  D +VG  GE  + F A    + ++   Q   F YS R GT   ++   
Sbjct: 306 IKEKIPDAFIGVDVMVGSRGEKPEYFEACYQFLKQLDVTQLHVFPYSERPGTRALSIPYV 365

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           V +  K  R   L +   E+  +F    +GQ  EVL EK  + +  + G +     V L 
Sbjct: 366 VSDKEKKVRSKRLLQLSDEKTKAFYQKYIGQEAEVLFEKAVRGR-TMHGFTKNYIRVELP 424

Query: 442 ---SKNHNIGDIIKVRITD 457
              +K+     +I V++ D
Sbjct: 425 ASLAKDKYDNQLITVKLGD 443


>gi|154249651|ref|YP_001410476.1| MiaB-like tRNA modifying enzyme [Fervidobacterium nodosum Rt17-B1]
 gi|154153587|gb|ABS60819.1| MiaB-like tRNA modifying enzyme [Fervidobacterium nodosum Rt17-B1]
          Length = 421

 Score =  323 bits (827), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 123/427 (28%), Positives = 211/427 (49%), Gaps = 23/427 (5%)

Query: 36  MNVYDSLRMEDMFFSQGYERVNSMD-DADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSR 94
           MN Y+S  M +M  +  Y  +   D +AD+ ++N+C +  +A  KV   +  IR      
Sbjct: 1   MNQYESELMIEMLENADYIVIPETDINADIYIINSCAVTGEAERKVRQTIRHIR------ 54

Query: 95  IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDY 154
            KE  D  +++ GC  Q   E     +  V++V+G      + + L       +    DY
Sbjct: 55  -KENPDSKIILTGCYTQIPRESSEYETLGVDLVLGNSEKKSIVKFLNENGIYSK---IDY 110

Query: 155 SVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG-IEISRSLSQVVDE 213
             ED      + D    R R   AF+ +++GC+  CT+CV+   RG    S+ +  V+ E
Sbjct: 111 WREDDISYEMVKDSIAERSR---AFIKVEDGCNNGCTYCVIRSLRGTRIRSKPIEVVIKE 167

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
           A +LI     E+ + G N+    GK +       + LL  +S+I G  R+R ++ +P D+
Sbjct: 168 AEQLITKKHKELVITGLNLG-KYGKDI---GTNLAKLLNEVSKINGDFRIRLSSINPEDL 223

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
            D LI    + D +  +LH+P+QSGS  +LK M R +TA     +++++R+  P  +I++
Sbjct: 224 DDELINIILENDKICNHLHIPIQSGSTSVLKRMGRNYTADYLLGLVEKLRAADPLFSITT 283

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLC 393
           D +VGFPGE++ +F+ T+DLV K+ +++  +F++S R GT  + M  +V  NVK +R+  
Sbjct: 284 DIMVGFPGESEQEFQETIDLVSKLEFSKVHAFRFSERPGTRAAQMDRKVPGNVKKDRVEM 343

Query: 394 LQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKV 453
           L    +    ++    VG+   VL+E      G  +G   +       +    IGD +K 
Sbjct: 344 LISHSQNVANAYKRKLVGKTTTVLVEGV--MNGIYIGYDEYYIP--HETNGGIIGDFVKT 399

Query: 454 RITDVKI 460
            I  V  
Sbjct: 400 VILSVTA 406


>gi|328541783|ref|YP_004301892.1| methylase protein (RNA modification enzyme), MiaB family
           [polymorphum gilvum SL003B-26A1]
 gi|326411535|gb|ADZ68598.1| Putative methylase protein (RNA modification enzyme), MiaB family
           [Polymorphum gilvum SL003B-26A1]
          Length = 422

 Score =  323 bits (827), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 134/445 (30%), Positives = 217/445 (48%), Gaps = 36/445 (8%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V ++GC++N Y+S  M+    + G +        D I++NTC +  +A  +    + + R
Sbjct: 5   VVTFGCRLNSYESEVMKREAEAAGLK--------DAILINTCAVTAEAVRQAGQAVRKAR 56

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG-- 146
                  ++  D  ++V GC AQ E       +  V++V+G             A+FG  
Sbjct: 57  -------RDNPDATIIVTGCAAQTETARFAEMA-EVDLVLGNSEKLERASYGRLAQFGLD 108

Query: 147 ---KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
              K  V+   SV +    L  +DG   R R   AF+ +Q GCD  CTFC++P+ RG   
Sbjct: 109 DSEKVRVNDIMSVRETAGHL--IDGLEGRAR---AFVQVQNGCDHRCTFCIIPFGRGNSR 163

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           S  +  VVD+ R+L+DNG  EI L G ++ +  G  L G     + +   L  + GL RL
Sbjct: 164 SVPMGVVVDQVRRLVDNGYLEIVLTGVDITS-YGADLPGAPRLGALVAKILKLVPGLKRL 222

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R ++    +    L++   + + LMP+ HL +Q+G D ILK M RRH   +  +  + +R
Sbjct: 223 RLSSIDSIEADPALMRVVAEDERLMPHFHLSLQAGDDLILKRMKRRHLRADTIRFCEEVR 282

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
            +RPD+   +D I GFP ET+  F  ++ +VD  G      F +SPR GTP + M  Q+D
Sbjct: 283 RLRPDVVFGADIIAGFPTETEAMFENSLAIVDDCGLTHLHVFPFSPRPGTPAARMP-QLD 341

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
           + V   R   L+ +      ++  A VG++  VL+E+ G      +GR+     V ++  
Sbjct: 342 KAVIKARAARLRARGEAALAAYLAAEVGRLRPVLVEREG------LGRTEQFTQVEVDGG 395

Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468
               G+I++ RIT      L G L+
Sbjct: 396 T--PGEIVETRITGHTGRHLLGTLL 418


>gi|256784823|ref|ZP_05523254.1| hypothetical protein SlivT_10053 [Streptomyces lividans TK24]
          Length = 475

 Score =  323 bits (827), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 126/469 (26%), Positives = 204/469 (43%), Gaps = 45/469 (9%)

Query: 40  DSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGG 99
           DS  +     + G++ V+  ++AD+ V+NTC   E A +     L    +LK      G 
Sbjct: 2   DSEELAGRLEADGWKLVDDAEEADVAVVNTCGFVEAAKKDSVDALLEANDLKG----HGR 57

Query: 100 DLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL------------------- 140
              VV  GC+A+  G+E+    P  + V+G   Y  + + L                   
Sbjct: 58  TQAVVAVGCMAERYGKELADALPEADGVLGFDDYADISDRLQTILNGGIHAAHTPRDRRK 117

Query: 141 -------ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRG-----VTAFLTIQEGCDK 188
                  ER   G  V    +   D  E ++   G     R        A + +  GCD+
Sbjct: 118 LLPISPAERQEAGAAVALPGHGPTDLPEGVAPASGPRAPLRRRLDGSPVASVKLASGCDR 177

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS 248
            C+FC +P  RG  ISR  S V++E R L + GV EI L+ +N N   GK L G+     
Sbjct: 178 RCSFCAIPSFRGSFISRRPSDVLNETRWLAEQGVKEIMLVSEN-NTSYGKDL-GDIRLLE 235

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
            LL +L+E+ G+ R+R +   P +M   LI      + + PY  L  Q  +  +L++M R
Sbjct: 236 SLLPNLAEVDGIERVRVSYLQPAEMRPGLIDVLTSTEKVAPYFDLSFQHSAPNVLRAMRR 295

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
                 + +++D IRS  P+  + S+FIVGFPGE++ D       ++         F YS
Sbjct: 296 FGDTDRFLELLDTIRSKAPEAGVRSNFIVGFPGESEADLAELERFLNHARLDAIGVFGYS 355

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK--EKG 426
              GT  +   +++DE+V AERL  + +   E      D  VG  + VL+E      E  
Sbjct: 356 DEEGTEAATYGDKLDEDVVAERLARVSRLAEELVSQRADERVGATVRVLVESVDPAGEGD 415

Query: 427 KLVGR----SPWLQSVVL--NSKNHNIGDIIKVRITDVKISTLYGELVV 469
            + GR    +P     VL  +    ++G ++  ++   +   L  E ++
Sbjct: 416 GVRGRAEHQAPETDGQVLLTSGAGLSVGRMVDAKVVGTEGVDLVAEPLL 464


>gi|121605338|ref|YP_982667.1| ribosomal protein S12 methylthiotransferase [Polaromonas
           naphthalenivorans CJ2]
 gi|238066437|sp|A1VQ18|RIMO_POLNA RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|120594307|gb|ABM37746.1| SSU ribosomal protein S12P methylthiotransferase [Polaromonas
           naphthalenivorans CJ2]
          Length = 461

 Score =  323 bits (827), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 117/472 (24%), Positives = 197/472 (41%), Gaps = 49/472 (10%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R  + S GC   + DS  +     ++GY+   + + ADL+++NTC   + A  +    +G
Sbjct: 10  RIGMVSLGCPKALTDSELILTRLSAEGYQTSKTFEGADLVIVNTCGFIDDAVRESLDTIG 69

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEE----ILRRSPIVNVVVGPQTYYRLPELLE 141
                            V+V GC+    G+     + +  P V  V GP     + + + 
Sbjct: 70  EALAANGK---------VIVTGCLGAKSGDNGSNLVRQMHPSVLAVTGPHATQEVMDAVH 120

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDG--GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
                   ++     +   + +    G  G        A+L I EGC+  CTFC++P  R
Sbjct: 121 --------LNLPKPHDPFVDLVPNAFGIAGIKLTPRHYAYLKISEGCNHRCTFCIIPSMR 172

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLL 251
           G  +SR +  V+ EAR L + GV E+ ++ Q+ +A+      R    DG+  K    +L+
Sbjct: 173 GDLVSRPVGDVLSEARALFEGGVKELLVISQDTSAYGVDVKYRTGFWDGKPVKTRMLELV 232

Query: 252 YSLSEI----KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307
            +L EI       VRL Y   +P       + A G    ++PYL +P+Q     +L+ M 
Sbjct: 233 QALGEIAAPFGAWVRLHYVYPYPSVDEILPLMATG---KVLPYLDVPLQHSHPDVLRRMK 289

Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           R  +  +  + I R R + P+I I S FI GFPGET+ +F   +D + +    +A  F Y
Sbjct: 290 RPASGEKNLERISRWREMCPEIVIRSTFIAGFPGETEAEFEHLLDFMREAKIDRAGCFAY 349

Query: 368 SPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-----KHG 422
           S   G   +++   +   V+ ER                   VG  ++VL++        
Sbjct: 350 SAVQGATANDIPGMLPLGVREERRARFMAVAEAVSSQKLQQRVGATMQVLVDHAPALGRK 409

Query: 423 KEKGKLVGRSPWLQSVV------LNSKNHNIGDIIKVRITDVKISTLYGELV 468
              G+    +P +  VV        SK   +G+  + RI  V+   L    V
Sbjct: 410 GGTGRSYADAPEIDGVVKLLPPEKISKTMKVGEFTRARIVGVQGHDLIAVPV 461


>gi|253566270|ref|ZP_04843724.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|251945374|gb|EES85812.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|301164592|emb|CBW24151.1| conserved hypothetical protein [Bacteroides fragilis 638R]
          Length = 439

 Score =  323 bits (827), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 119/454 (26%), Positives = 204/454 (44%), Gaps = 20/454 (4%)

Query: 17  IVDQCIVPQRFFVK-SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREK 75
           ++D  +   +  V  + GC++N  ++  +  +    G       + ADL ++NTC + E 
Sbjct: 1   MIDTTVFQDKTAVYYTLGCKLNFSETSTIGKILREAGVRTARKGEKADLCIVNTCSVTEM 60

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135
           A +K    + R+       +K+     VVV GC AQ +  ++  +   V+VV+G +    
Sbjct: 61  ADKKCRQAIHRL-------VKQHPGAFVVVTGCYAQLKPGDVA-KIEGVDVVLGAEQKKD 112

Query: 136 LPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
           L + L      +       + +D            +R      FL +Q+GCD FC++C +
Sbjct: 113 LLQYLGDLHKHEGGEAYTTATKDIRSFAP----SCSRGDRTRFFLKVQDGCDYFCSYCTI 168

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
           P+ RG   + +++ +V++AR+    G  EI L G N+    G        TF DL+ +L 
Sbjct: 169 PFARGRSRNGTIASLVEQARQAAAEGGKEIVLTGVNI----GDFGKSTGETFFDLVKALD 224

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
            ++G+ R R ++  P  ++D +I+        MP+ H+P+QSGSD +L+ M RR+    +
Sbjct: 225 RVEGIERYRISSIEPNLLTDEIIEYVSRSRSFMPHFHIPLQSGSDEVLQLMRRRYGTELF 284

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
              I +I+ V PD  I  D IVG  GET   F    + +  +   Q   F YS R GT  
Sbjct: 285 ASKIAKIKEVMPDAFIGVDVIVGTRGETAGYFEKAYEFIHGLDVTQLHVFSYSERPGTQA 344

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWL 435
             +   V    K +R   L     E+  +F    +GQ + VL+EK  K    + G +   
Sbjct: 345 LKIDHVVTPEEKHQRSQRLLALSDEKTKAFYARHIGQTMPVLMEKP-KAGAPMHGFTANY 403

Query: 436 QSVVLNSKNHNIGDIIKVRITDVKI--STLYGEL 467
             V + S       ++ V + D     + L G +
Sbjct: 404 IRVEVESDAALDNKVVNVLLGDFNEEGTALKGTI 437


>gi|71664178|ref|XP_819072.1| tRNA modification enzyme [Trypanosoma cruzi strain CL Brener]
 gi|70884358|gb|EAN97221.1| tRNA modification enzyme, putative [Trypanosoma cruzi]
          Length = 530

 Score =  323 bits (827), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 119/450 (26%), Positives = 210/450 (46%), Gaps = 25/450 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
             F+ ++GC  NV D   M  +    GY   +  + AD+ +LN+C ++  + E   S + 
Sbjct: 50  TVFIHTFGCSHNVSDGEYMAGLLAQAGYRVTDVFNGADVYLLNSCTVKNPSEEHFISMMN 109

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R+R              +VVAGCV QA+      +   V+ V+G +   R+ E++  A  
Sbjct: 110 RVRA---------TGKPLVVAGCVPQADPRN--TQWDDVS-VIGVRNIDRVGEVIHEALQ 157

Query: 146 GKRV----VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           G  V    V+   + +     L  +D    R+      + I  GC   CT+C     RG 
Sbjct: 158 GHCVRLIGVNEHANNKQDPNELPPLDLPKIRRNRFIEIIPISVGCLNHCTYCKTKQARGD 217

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG-L 260
             S  +  +V   R ++  GV EI +  ++V A+   G+D      S L   + EI+G  
Sbjct: 218 LRSWPIESIVSRVRSVLKEGVKEIRITSEDVGAY---GIDINTDIVSLLRAIVKEIQGTE 274

Query: 261 VRLRYTTSHPRDMSDCLIKAHG--DLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           V +R   S+P  +   L           +  ++H+P+QSGS+RIL +M R +T  E+ + 
Sbjct: 275 VMMRVGMSNPPYLLRHLDDFAALLRHPNVYEFVHIPIQSGSNRILNAMQREYTLEEFYEC 334

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           + RIRSV P++ +++D I  FPGE + ++R TM+L D + +      ++ PR  TP ++M
Sbjct: 335 VHRIRSVVPNVTLATDIICAFPGEGEAEWRETMELCDHVRFPVLNITRFYPRRNTPAASM 394

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSV 438
            +Q+  +V   R   L +          D  VG++  V + +   +K  LVG +     V
Sbjct: 395 -KQIPTDVAKRRTSELTEFFN--SYRTLDQMVGEVHSVALLETAHDKHHLVGHTKAYVQV 451

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           +++ +   +G+ + V I      ++ G ++
Sbjct: 452 LVDPQEARLGETVTVVIMSTTKYSVVGRVL 481


>gi|302346286|ref|YP_003814584.1| MiaB-like protein [Prevotella melaninogenica ATCC 25845]
 gi|302150387|gb|ADK96648.1| MiaB-like protein [Prevotella melaninogenica ATCC 25845]
          Length = 449

 Score =  323 bits (827), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 119/453 (26%), Positives = 204/453 (45%), Gaps = 22/453 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +     + GC++N  ++       ++ G       + AD+ ++NTC + E A  K    +
Sbjct: 10  KTAKFYTLGCKLNFSETSTFARTLYNMGVREAKKTEQADICLINTCSVTEVADHKCRQII 69

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL---- 140
            R+       +++     V+V GC AQ E   +  +   V++V+G      L + L    
Sbjct: 70  HRM-------VRQNPGAFVIVTGCYAQLESATVA-KIEGVDLVLGSNEKADLVQYLSDAW 121

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
            +    K           K + +       +R      FL +Q+GC+ FCT+C +P+ RG
Sbjct: 122 NKVDTAKEETSEGEYHSVKTKDIKSFQASCSRGNRTRYFLKVQDGCNYFCTYCTIPFARG 181

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
              + ++  +V +A +    G  EI L G N+    G        +F DL+ +L +++G+
Sbjct: 182 FSRNPTIQSLVAQAEEAAREGGKEIVLTGVNI----GDFGKTTGESFLDLVKALDKVEGI 237

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R R ++  P  + D LI    +    MP+ HLP+QSGSD +L+ M+RR+    + + I 
Sbjct: 238 QRFRISSLEPDLIDDELIAYCAESRAFMPHFHLPLQSGSDEVLELMHRRYDTALFARKIK 297

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
            I+   PD  I  D +VG  GE  + F    + +D +   Q   F YS R GT   ++  
Sbjct: 298 LIKEKMPDAFIGVDVMVGSRGERPEYFEDCYNFLDSLPVTQLHVFPYSERPGTAALSIPY 357

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440
            VD+  K  R   L K   E+  +F    +GQ  +VL EK  + K  + G +     V L
Sbjct: 358 VVDDREKKHRAHKLLKLSDEKTRTFYAEHIGQEADVLFEKAARGKA-MHGFTDNYIRVEL 416

Query: 441 N---SKNHNIGDIIKVRITD--VKISTLYGELV 468
           +   +K      I++VR+ +     S+L  EL+
Sbjct: 417 SPDQAKEEYDNQILRVRLGEFNFDQSSLKAELL 449


>gi|119871859|ref|YP_929866.1| RNA modification protein [Pyrobaculum islandicum DSM 4184]
 gi|119673267|gb|ABL87523.1| RNA modification enzyme, MiaB family [Pyrobaculum islandicum DSM
           4184]
          Length = 415

 Score =  323 bits (827), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 129/453 (28%), Positives = 212/453 (46%), Gaps = 50/453 (11%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R +V++YGC +   D+  +       GYE+V+++D+AD+I++ TC +RE    +  + + 
Sbjct: 3   RIYVETYGCWLAKADAEILRQRL---GYEQVSNVDEADVILVYTCAVREDGEVRQLARIR 59

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +  L            ++VAGC+A+     I   +P   ++                  
Sbjct: 60  ELVKLGKE---------LIVAGCLARLRPYTIKSLAPHAKLIY----------------- 93

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI---E 202
                + +   E   + L   +      RG+   + +Q GC   CTFC   YTRG     
Sbjct: 94  ---PSEIEGGKERSMKTLPKYE------RGLIYTVPLQVGCLGNCTFCATKYTRGGAGYV 144

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQN-VNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
            S     VV   ++ +  G  EI L GQ+ +      G  G       L   L E++G  
Sbjct: 145 KSADPDDVVRHIKEAVAKGAREIYLTGQDVITYGFDAGWRGGWTLPDLLDRILKEVEGEY 204

Query: 262 RLRYTTSHPRDMS---DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           R+R   S P       D L+        +  Y HLPVQSGSD++L +M R++T  EYR +
Sbjct: 205 RVRIGMSEPWIFEKFVDQLLDIIKRDHRVYRYFHLPVQSGSDKVLVAMGRKYTVEEYRGL 264

Query: 319 IDRIR-SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
           I RIR  +  ++ I++D IVGFPGET++DF+ T+ LV+++ + +    ++SPR  T  + 
Sbjct: 265 IRRIRRELGDNVFIATDIIVGFPGETEEDFQETVKLVEELQFDKIHVARFSPRPFTEAAV 324

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQS 437
           M  QV +  K  R   L +         N A VG+   VLI++   + G +VGR+   + 
Sbjct: 325 MPRQVPDAEKKRRSKILSEVAMRIAHLRNGAQVGKRDVVLIDEV--DHGLVVGRASDYRQ 382

Query: 438 VVLN--SKNHNIGDIIKVRITDVKISTLYGELV 468
           VV+   + +  +G+ + VRI       LYGE++
Sbjct: 383 VVVKRGAGDGLLGEFVNVRIAAASPVYLYGEIL 415


>gi|297566746|ref|YP_003685718.1| MiaB-like tRNA modifying enzyme [Meiothermus silvanus DSM 9946]
 gi|296851195|gb|ADH64210.1| MiaB-like tRNA modifying enzyme [Meiothermus silvanus DSM 9946]
          Length = 443

 Score =  323 bits (827), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 113/447 (25%), Positives = 206/447 (46%), Gaps = 26/447 (5%)

Query: 20  QCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEK 79
             + P R  V++ GC++N  +S  +  +  +   + V   D ADL+V+NTC +   A   
Sbjct: 5   AALSPVRLAVRTLGCKVNQVESDALVGLLRALQPQVVRLEDGADLVVINTCAVTTTAEAD 64

Query: 80  VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL 139
               + R R       +      +VV GC A+   +++       + VV       LP +
Sbjct: 65  ARKEVRRAR-------RANPQAFIVVTGCYAELAPDQLAEL--GADAVVPNARKAELPRV 115

Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           +         +  D       E     + G      V +F+ +Q+GC+  C +C++P  R
Sbjct: 116 ILEHFG----LPADPLTTPPNEFWGAGERGLL-NNWVRSFVKVQDGCNAGCAYCIIPRLR 170

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G E  R+    + EAR L++ GV EI L G  + ++R     G     + L+  L  +  
Sbjct: 171 GRERHRASGDALAEARGLLEAGVQEIVLTGVRLGSYR-----GHPQGIAGLVEELVLMGA 225

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDL-DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
            VRL  ++  P D    L++        + P+LHL +Q+GSDR+LK M RR+    YR++
Sbjct: 226 KVRL--SSIEPEDTGRELLEVIARYAPRVRPHLHLSLQTGSDRLLKLMGRRYDTTYYREL 283

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           +    ++ P  A+++D I G P ET+ + + T+ L+ ++  ++  +F Y+PR  T  +++
Sbjct: 284 VQMAYALIPGFALTTDVIAGLPTETEAEHQETLALLRELRPSRVHAFTYTPRPKTRAASL 343

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSV 438
             QV    +  R   +    +E         +G  +EVL+E   + +G+ VG +P    V
Sbjct: 344 P-QVPIEERKRRTKEIIALAQELAAGRIAPKLGSRVEVLLE--SRREGQWVGHTPDYYEV 400

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYG 465
           + +      G  + V++ +++  TL G
Sbjct: 401 LADGAGRQ-GQTVWVKVREIRGYTLLG 426


>gi|327314071|ref|YP_004329508.1| tRNA methylthiotransferase YqeV [Prevotella denticola F0289]
 gi|326945694|gb|AEA21579.1| tRNA methylthiotransferase YqeV [Prevotella denticola F0289]
          Length = 450

 Score =  322 bits (826), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 119/454 (26%), Positives = 202/454 (44%), Gaps = 23/454 (5%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +     + GC++N  ++       ++ G       + AD+ ++NTC + E A  K    +
Sbjct: 10  KTARFYTLGCKLNFSETSTFARTLYNMGVREAKKSEKADICLINTCSVTEVADHKCRQVI 69

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R+       +++     V+V GC AQ E   +      V++V+G      L + L  A 
Sbjct: 70  HRM-------VRQNPGAFVIVTGCYAQLESAAVAG-IEGVDLVLGSNEKADLIQYLSDAW 121

Query: 145 FGKRVVDTDYSVEDKFERLSIVD-----GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
                     +   ++  +   D        +R      FL +Q+GC  FCT+C +PY R
Sbjct: 122 NRPEAGKEHGASPAEYHSVRTKDIRSFQPSCSRGNRTRYFLKVQDGCSYFCTYCTIPYAR 181

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G   + +++ +V +A +    G  EI L G N+    G   +     F DL+ +L  ++G
Sbjct: 182 GFSRNPTIASLVSQAEEAAHEGGREIVLTGVNI----GDFGETTGERFLDLVKALDRVEG 237

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           + R R ++  P  + D LI         MP+ H+P+QSGSD +LK M+RR+    +   I
Sbjct: 238 IRRYRISSLEPDLIDDELIAYCAQSRAFMPHFHIPLQSGSDEVLKLMHRRYDTALFAHKI 297

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
             I+ + PD  I  D +VG  GE  + F    + ++ +   Q   F YS R GT   ++ 
Sbjct: 298 RLIKEMMPDAFIGVDVMVGSRGERPEYFEDCYNFLESLPVTQLHVFPYSERPGTSALSIP 357

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV 439
             VD+  K  R   L K   E+  +F  A +GQ  +VL EK  + K  + G +     V 
Sbjct: 358 YVVDDREKKRRSHRLLKLSDEKTHAFYAAHIGQEADVLFEKAPRGKA-MHGFTDNYIRVE 416

Query: 440 LN---SKNHNIGDIIKVRITD--VKISTLYGELV 468
           L+   ++      I++VR+       S+L  EL+
Sbjct: 417 LSPAQAEEAYDNQIVRVRLGGFSFDQSSLKAELL 450


>gi|296328428|ref|ZP_06870954.1| 2-methylthioadenine synthetase [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
 gi|296154502|gb|EFG95294.1| 2-methylthioadenine synthetase [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
          Length = 435

 Score =  322 bits (826), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 120/445 (26%), Positives = 222/445 (49%), Gaps = 20/445 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++    + GC++N Y++  +++    +GYE V   D +D+ ++N+C +   A  K  + L
Sbjct: 5   KKVAFHTLGCKVNQYETESIKNQLIKRGYEEVPFEDKSDIYIINSCTVTSIADRKTRNML 64

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R +       K      V+V GC AQ    EIL     V+ V+  +    +   +    
Sbjct: 65  RRAK-------KINPKAKVIVTGCYAQTNSREIL-EIEDVDFVIDNKNKSNIVNFVGAIE 116

Query: 145 --FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
               +R  + +   E +++           +    A++ IQ+GC+ FC++C +P+ RG  
Sbjct: 117 DISFEREKNGNIFQEKEYQEYEFATL----REMTRAYVKIQDGCNHFCSYCKIPFARGKS 172

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR    ++ E  KL+++G  EI L+G +++A  G+  + EK  F  LL  +  IK L R
Sbjct: 173 RSRKKENILKEIEKLVEDGFKEIILIGIDLSA-YGEDFE-EKDNFESLLEDILRIKDLKR 230

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R  + +P  ++D  I+   +   LMP+LH+ +QS  D +LK+M R + +   ++ + ++
Sbjct: 231 VRIGSVYPDKITDRFIELFKN-KKLMPHLHISLQSCDDTVLKNMRRNYGSSLIKKSLLKL 289

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           +S   D+  ++D IVGFP E +  F+ T D++ +I ++    F+YS R GT  SNM  ++
Sbjct: 290 KSKVKDMEFTADVIVGFPKEDEIMFQNTYDVIKEIEFSGLHIFQYSDREGTIASNMDGKI 349

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL-N 441
           D   K +R   L    +E  V      + + +EVL+E+  ++ G+  G S     V   +
Sbjct: 350 DAKTKKQRADRLDSLKQEMIVDSRKKYLEKSLEVLVEE--EKNGEYFGYSQNYLRVKFRS 407

Query: 442 SKNHNIGDIIKVRITDVKISTLYGE 466
            K   + ++I V++  V+   L  E
Sbjct: 408 DKKDLVNNLINVKVKCVENDILIAE 432


>gi|74003948|ref|XP_545362.2| PREDICTED: similar to CDK5 regulatory subunit associated protein
           1-like 1 isoform 1 [Canis familiaris]
          Length = 557

 Score =  322 bits (826), Expect = 7e-86,   Method: Composition-based stats.
 Identities = 108/456 (23%), Positives = 201/456 (44%), Gaps = 39/456 (8%)

Query: 15  SQIVDQCIVP-QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIR 73
           S   D  I   Q+ +++++GC  N  D   M     + GYE   +  +ADL +LN+C ++
Sbjct: 52  SPPSDSTIPGIQKIWMRTWGCSHNNSDGEYMAGQLAAYGYEITENASEADLWLLNSCTVK 111

Query: 74  EKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTY 133
             A +   + + + +              +V+AGCV QA+  +   +      ++G Q  
Sbjct: 112 NPAEDHFRNSIKKAQEENKK---------IVLAGCVPQAQPRQDYFKG---LSIIGVQQI 159

Query: 134 YRLPELLERARFGKRVVDTDYSVED-KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTF 192
            R+ E++E    G  V        + K    + +D    RK  +   +++  GC   CT+
Sbjct: 160 DRVVEVVEETIKGHSVRLLGQKKANGKRLGGARLDLPKIRKNPLIEIISVNTGCLNACTY 219

Query: 193 CVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLY 252
           C   + RG   S  + ++V+ A++    GVCEI L  ++  A  G+ +          L 
Sbjct: 220 CKTKHARGNLASYPIDELVERAKQSFQEGVCEIWLTSEDTGA-YGRDIGTNLPALLWKLV 278

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
            +     ++RL  T           +    +   +  +LH+PVQS SD +L  M R +  
Sbjct: 279 EVIPEGAMLRLGMTNPPYILEHLEEMAKILNHPRVYAFLHIPVQSASDTVLMEMKREYCV 338

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
            ++++++D ++   P I +++D I GFPGETD DF+ T+ LV+   +   F  ++ PR G
Sbjct: 339 ADFKRVVDFLKEKVPGITLATDIICGFPGETDQDFQETVKLVEDYKFPSLFINQFYPRPG 398

Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS 432
           TP + M+ QV   V                       +G+  +VL+ +   +    V  +
Sbjct: 399 TPAAKMV-QVPAQV-----------------------IGERQQVLVTEESFDSKFYVAHN 434

Query: 433 PWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            + + V++      +G +I+V I +     + G+ V
Sbjct: 435 RFYEQVLVPKNPTFMGKMIEVDIYESGKHFMKGQPV 470


>gi|218264310|ref|ZP_03478167.1| hypothetical protein PRABACTJOHN_03858 [Parabacteroides johnsonii
           DSM 18315]
 gi|218222111|gb|EEC94761.1| hypothetical protein PRABACTJOHN_03858 [Parabacteroides johnsonii
           DSM 18315]
          Length = 440

 Score =  322 bits (826), Expect = 7e-86,   Method: Composition-based stats.
 Identities = 118/442 (26%), Positives = 205/442 (46%), Gaps = 17/442 (3%)

Query: 17  IVDQCIVPQRFF-VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREK 75
           ++D+ +   +     + GC++N  ++  +  +   QG  +    + AD+ V+NTC + E 
Sbjct: 1   MIDKTVFENKIAAYYTLGCKLNFAETSTIGKVLAEQGVRKARPSEKADICVVNTCSVTEL 60

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135
           A +K    + RI        K+     +VV GC AQ + EE+      V++V+G +    
Sbjct: 61  ADKKCRQAIRRI-------GKQHPGAFIVVIGCYAQLKPEEV-SHIEGVDLVLGAEQKLD 112

Query: 136 LPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
           +   L+  +  +       S        S      +R R    FL +Q+GCD FC++C +
Sbjct: 113 ILMYLDDLKKKEEGGAVIASQTKDIRSFSPSCSADDRTR---HFLKVQDGCDYFCSYCTI 169

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
           P+ RG   + +++ +V +A ++  +G  EI L G N+    G        TF DL+ +L 
Sbjct: 170 PFARGRSRNGTIASMVKQAEEVAASGGKEIVLTGVNI----GDFGKSTGETFIDLIRALD 225

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
           E++G+VR R ++  P  ++D  I          P+ H+P+QSGSD +LK M RR+    +
Sbjct: 226 EVEGIVRYRISSIEPNLITDEAIDFVAHSKHFAPHFHIPLQSGSDDVLKLMRRRYDTTLF 285

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
           R  I++I+ V P   I  D IVG  GETD  F      ++ +  +Q   F YS R GT  
Sbjct: 286 RHKIEKIKEVMPHAFIGVDVIVGTRGETDTYFEDARTFIESLDISQLHVFSYSERPGTQA 345

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWL 435
             +   VD   K  R   L      +  +F +  +G+   VL E+  ++ G + G +   
Sbjct: 346 LKIDYVVDPKTKHARSQQLLDISDRKLHTFYETHIGKQANVLFEQT-RKGGMMHGFTENY 404

Query: 436 QSVVLNSKNHNIGDIIKVRITD 457
             V +   +  + +  +V + D
Sbjct: 405 IKVEIPYDSSLVNETRQVTLGD 426


>gi|295092927|emb|CBK82018.1| MiaB-like tRNA modifying enzyme [Coprococcus sp. ART55/1]
          Length = 452

 Score =  322 bits (826), Expect = 7e-86,   Method: Composition-based stats.
 Identities = 124/439 (28%), Positives = 220/439 (50%), Gaps = 26/439 (5%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N  ++  M DM  + G   V   + AD+ ++NTC +   A +K    L R R  
Sbjct: 11  TLGCKVNQAETDSMLDMLKAAGANIVEFDEKADIYIVNTCSVTNIADKKSRQMLHRAR-- 68

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL---------E 141
                K   D +V+ AGC  Q    EIL +   +++V+       + E++         E
Sbjct: 69  -----KMNPDGIVIAAGCYVQ-SAREILEQDEAIDIVISNNKKKSITEIVNDYINVRNNE 122

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           +   GK     +Y V+   E      GG+       A++ IQ+GC++FC++C++PY RG 
Sbjct: 123 KNAPGKDHEAMEYFVDISRETEYEEMGGHVPVGHTRAYVKIQDGCNQFCSYCIIPYVRGR 182

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
             SRS   ++ E  +L + G+ E+ L G ++++  GK  + E     +L+ ++S+IKG+ 
Sbjct: 183 IRSRSQEAILAEVSELAEAGIKEVVLTGIHISS-YGKDKNNEGA-LIELIEAISKIKGIK 240

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R  +  P  +++  ++       + P+ HL +QSG D +LK MNR++T  +Y +  D 
Sbjct: 241 RIRLGSLEPGIITEEFVERISSNSKVCPHFHLSLQSGCDSVLKRMNRKYTCEQYFEKCDM 300

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R      A+++D IVGFPGET+++F  T+  + ++   +   FKYSPR GT  + M EQ
Sbjct: 301 LRKAYKSPALTTDVIVGFPGETEEEFAETVRYLTELNLYEMHIFKYSPRKGTVAAAMKEQ 360

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG--KLVGRSPWLQSVV 439
           V   +K ER   L K   + + ++     G  +EVL+E+  K+     L G +     ++
Sbjct: 361 VAPEIKNERSDVLLKLAHDNKTAYEAQFEGCELEVLVEEVVKKDNKTYLRGHTERYMDIL 420

Query: 440 LN-----SKNHNIGDIIKV 453
           ++          +   + V
Sbjct: 421 IDVGDISMPESFVNSFVYV 439


>gi|60683077|ref|YP_213221.1| hypothetical protein BF3627 [Bacteroides fragilis NCTC 9343]
 gi|60494511|emb|CAH09308.1| conserved hypothetical protein [Bacteroides fragilis NCTC 9343]
          Length = 439

 Score =  322 bits (826), Expect = 7e-86,   Method: Composition-based stats.
 Identities = 120/454 (26%), Positives = 205/454 (45%), Gaps = 20/454 (4%)

Query: 17  IVDQCIVPQRFFVK-SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREK 75
           ++D  +   +  V  + GC++N  ++  +  +    G       + ADL ++NTC + E 
Sbjct: 1   MIDTTVFQDKTAVYYTLGCKLNFSETSTIGKILREAGVRTARKGEKADLCIVNTCSVTEM 60

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135
           A +K    + R+       +K+     VVV GC AQ +  ++  +   V+VV+G +    
Sbjct: 61  ADKKCRQAIHRL-------VKQHPGAFVVVTGCYAQLKPGDVA-KIEGVDVVLGAEQKKD 112

Query: 136 LPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
           L + L      +       + +D            +R      FL +Q+GCD FC++C +
Sbjct: 113 LLQYLGDLHKHEGGEAYTTATKDIRSFAP----SCSRGDRTRFFLKVQDGCDYFCSYCTI 168

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
           P+ RG   + +++ +V++AR+    G  EI L G N+    G        TF DL+ +L 
Sbjct: 169 PFARGRSRNGTIASLVEQARQAAAEGGKEIVLTGVNI----GDFGKSTGETFFDLVKALD 224

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
            ++G+ R R ++  P  ++D +I+        MP+ H+P+QSGSD +L+ M RR+    +
Sbjct: 225 RVEGIERYRISSIEPNLLTDEIIEYVSRSRSFMPHFHIPLQSGSDEVLQLMRRRYGTELF 284

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
              I +I+ V PD  I  D IVG  GET   F    + +  +   Q   F YS R GT  
Sbjct: 285 ASKIAKIKEVMPDAFIGVDVIVGTRGETAGYFEKAYEFIHGLDVTQLHVFSYSERPGTQA 344

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWL 435
             +   V    K +R  CL     E+  +F    +GQ + VL+EK  K    + G +   
Sbjct: 345 LKIDHVVTPEEKHQRSQCLLALSDEKTKAFYARYIGQTMPVLMEKP-KAGAPMHGFTANY 403

Query: 436 QSVVLNSKNHNIGDIIKVRITDVKI--STLYGEL 467
             V + S       ++ V + D     + L G +
Sbjct: 404 IRVEVESDAALDNKVVNVLLGDFNEEGTALKGTI 437


>gi|71661088|ref|XP_817570.1| tRNA modification enzyme [Trypanosoma cruzi strain CL Brener]
 gi|70882770|gb|EAN95719.1| tRNA modification enzyme, putative [Trypanosoma cruzi]
          Length = 530

 Score =  322 bits (825), Expect = 8e-86,   Method: Composition-based stats.
 Identities = 120/450 (26%), Positives = 211/450 (46%), Gaps = 25/450 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
             F+ ++GC  NV D   M  +    GY   +  +DAD+ +LN+C ++  + E   S + 
Sbjct: 50  TVFIHTFGCSHNVSDGEYMAGLLAQAGYRVTDVFNDADVYLLNSCTVKNPSEEHFISMMN 109

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R+R              +VVAGCV QA+      +   V+ V+G +   R+ E++  A  
Sbjct: 110 RVRA---------TGKPLVVAGCVPQADPRN--TQWDDVS-VIGVRNIDRVGEVIHEALQ 157

Query: 146 GKRV----VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           G  V    V+   + +  F +L  +D    R+      + I  GC   CT+C     RG 
Sbjct: 158 GHCVRLIGVNEHANNKQDFNKLPPLDLPKIRRNRFIEIIPISVGCLNHCTYCKTKQARGD 217

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG-L 260
             S  +  +V   R ++  GV EI +  ++V A+   G+D        L   + EI+G  
Sbjct: 218 LRSWPIESIVLRVRSVLKEGVKEIRITSEDVGAY---GIDINTDIICLLRAIVKEIQGTE 274

Query: 261 VRLRYTTSHPRDMSDCLIKAHG--DLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           V +R   S+P  +   L           +  ++H+P+QSGS+RIL +M R +T  E+ + 
Sbjct: 275 VMMRVGMSNPPYLLRHLDDFAALLRHPNVYEFVHIPIQSGSNRILNAMQREYTLEEFYEC 334

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           + RIRSV P++ +++D I  FPGE + ++R TM+L D + +      ++ PR  TP ++M
Sbjct: 335 VHRIRSVVPNVTLATDIICAFPGEGEAEWRETMELCDHVRFPVLNITRFYPRRNTPAASM 394

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSV 438
            +Q+  +V   R   L            D  VG++  V + +   +K  LVG +     V
Sbjct: 395 -KQIPTDVAKRRTSELTAFFN--SYRTLDHMVGEVHSVALLETAHDKHHLVGHTKAYVQV 451

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           +++ +   +G+ + V I      ++ G ++
Sbjct: 452 LVDPQEARLGETVTVVIMSTTKYSVVGRVL 481


>gi|254468793|ref|ZP_05082199.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [beta
           proteobacterium KB13]
 gi|207087603|gb|EDZ64886.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [beta
           proteobacterium KB13]
          Length = 441

 Score =  322 bits (825), Expect = 8e-86,   Method: Composition-based stats.
 Identities = 124/462 (26%), Positives = 211/462 (45%), Gaps = 40/462 (8%)

Query: 18  VDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA 77
           +    +P+  F+ S GC     D+ ++     +QGYE  +S D +D++V+NTC   + A 
Sbjct: 1   MSSVKIPKIGFI-SLGCPKAGSDTEKIMTRVKTQGYEISSSYDKSDVVVVNTCGFIDSAI 59

Query: 78  EKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLP 137
           E+  + +          +K  G+  V+V GC+ +  G  I  R   +  + G +    + 
Sbjct: 60  EESLNTIDEA-------LKSNGN--VIVTGCLGEKRG-IIEERFKNLIAITGSEADKEVV 109

Query: 138 ELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197
           +++ +               D F  L I   G        A++ I EGC+  C+FC++P 
Sbjct: 110 DIINKVAP---------KPHDSFIDL-IPKSGLRLTPSHYAYIKISEGCNHKCSFCIIPS 159

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSD 249
            RG   SR+   ++ EA+ L+D+GV E+ ++ Q+ +A+      +    DG+  K     
Sbjct: 160 MRGKLASRTPEDILSEAQNLVDSGVTELIIISQDTSAYGVDFKVKQSFWDGKPVKRDLYH 219

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
           L   L +    VR  Y   +P    D +I+   D + ++PYL +P Q  S +ILKSM R 
Sbjct: 220 LAKELKKFGIWVRFHYIYPYPH--IDHMIELM-DEETILPYLDVPFQHASPKILKSMKRP 276

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369
             A +  + I   R + P+IA+ S FIVG+PGETD DF   +D + +        F+YS 
Sbjct: 277 ADAEDNLKRIQAWRQINPNIALRSTFIVGYPGETDHDFEQLIDFIKEANLDHVGCFEYSN 336

Query: 370 RLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV 429
             G     M +Q+ + VK ER   L +  +        + +G I  V++++        +
Sbjct: 337 VEGATAKLMSDQIPDIVKKERYNRLMETQKTLSEQKLKSLIGSIQHVVVDEVT--NDFAL 394

Query: 430 GRS----PWLQSVVL--NSKNHNIGDIIKVRITDVKISTLYG 465
            RS    P +  VV   + +    GD + V+IT      L+ 
Sbjct: 395 ARSFRSAPDVDGVVYLKDPEGLMAGDRLDVKITGNDSYNLFA 436


>gi|99082650|ref|YP_614804.1| MiaB-like tRNA modifying enzyme [Ruegeria sp. TM1040]
 gi|99038930|gb|ABF65542.1| MiaB-like tRNA modifying enzyme [Ruegeria sp. TM1040]
          Length = 421

 Score =  322 bits (825), Expect = 8e-86,   Method: Composition-based stats.
 Identities = 126/445 (28%), Positives = 206/445 (46%), Gaps = 39/445 (8%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
            P+     + GC++N Y++  M+++    G E          +V+NTC +  +A  K   
Sbjct: 4   APK---FTTLGCRLNAYETEAMKELSRQAGLEGA--------VVVNTCAVTAEAVRKARQ 52

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG------PQTYYRL 136
            + ++R       ++  D  ++V GC AQ E E        V  V+G      P+T+ R+
Sbjct: 53  EIRKLR-------RDHPDAPIIVTGCAAQTEPETFAA-MSEVTQVIGNTEKMQPETWQRM 104

Query: 137 PELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
            + L+     ++V VD   SV +    L  +DG   R R   A++ +Q GCD  CTFC++
Sbjct: 105 AKGLDFIGATEKVLVDDIMSVTETASHL--IDGFGTRSR---AYVQVQNGCDHRCTFCII 159

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
           PY RG   S     VVD+ ++L+D G  E+ L G ++ +W G  L         ++  L 
Sbjct: 160 PYGRGNSRSVPAGVVVDQIKRLVDKGYNEVVLTGVDLTSW-GADLPASPKLGDLVMRILK 218

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
            +  L RLR ++    ++ + L++A      LMP+LHL +Q G D ILK M RRH   + 
Sbjct: 219 LVPDLPRLRISSIDSIEVDENLMQAIATEPRLMPHLHLSLQHGDDLILKRMKRRHLRDDA 278

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
            +  +  R +RP +   +D I GFP ET+  F  ++ LV +        F YS R GTP 
Sbjct: 279 IRFTEEARKLRPQMTFGADIIAGFPTETESHFENSLKLVTECDLTWLHVFPYSKREGTPA 338

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWL 435
           + +  QV+ NV  ER   L+     Q        +G+   +L+E         +GR+   
Sbjct: 339 AKIPSQVNGNVIKERAARLRAIGEAQIARHLSEQIGRQHSILMENP------HMGRTEQF 392

Query: 436 QSVVLNSKNHNIGDIIKVRITDVKI 460
             V   +     G +++ +IT    
Sbjct: 393 TEVRFATPQTE-GALVQAQITGSDG 416


>gi|304384048|ref|ZP_07366503.1| 2-methylthioadenine synthetase [Prevotella marshii DSM 16973]
 gi|304334836|gb|EFM01111.1| 2-methylthioadenine synthetase [Prevotella marshii DSM 16973]
          Length = 443

 Score =  322 bits (825), Expect = 8e-86,   Method: Composition-based stats.
 Identities = 119/434 (27%), Positives = 189/434 (43%), Gaps = 20/434 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +     + GC++N  ++     +    G   V   + AD+ ++NTC + E A  K    +
Sbjct: 10  KTAAYFTLGCKLNFSETSTFGQLLQEMGVRTVAEGEYADICLINTCSVTEVADHKCRQAI 69

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R+       ++E     VVV GC AQ   + I      V++V+G      L + L RA 
Sbjct: 70  RRM-------VREHPGAFVVVTGCYAQLAPDAIAG-IEGVDLVLGANEKADLIQHLSRAW 121

Query: 145 FGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             +     T  S+      +        R      FL +Q+GCD FCT+C +P+ RG   
Sbjct: 122 SEELAGKHTTCSITGTTAEIRSFAPSCARGNRTRYFLKVQDGCDYFCTYCTIPFARGRSR 181

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           + S+  +V++A      G  EI L G N+    G+    E     +L+ +L  ++G+ R 
Sbjct: 182 NPSIESLVEQAETAARQGGKEIVLTGVNI----GEFSTAEGLGLLELVKTLDCVEGIQRF 237

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R ++  P  + D LI    +    MP+ H+P+QSGSD +L+ M R +    + + +D IR
Sbjct: 238 RISSIEPDLLDDELIAYCAESRAFMPHFHIPLQSGSDAVLRLMERHYDTKLFAEKVDTIR 297

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              PD  I  D +VG  GET + F  T   +D +   Q   F YS R GT    +   V 
Sbjct: 298 RYMPDAFIGVDVMVGARGETPEYFDETYRFLDSLDITQLHVFPYSERPGTRALRIPYIVS 357

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS- 442
           ++ K  R   L +    +  +F    +G   EVL+EK    K  + G +     V L   
Sbjct: 358 DHDKRLRSKRLLELSDRKTRAFYAKHIGTTAEVLLEKGTHGKAVMHGFTRNYIRVELRGQ 417

Query: 443 --KNHNI----GDI 450
              NH +    GD 
Sbjct: 418 APDNHLVHVVLGDF 431


>gi|259419341|ref|ZP_05743258.1| conserved hypothetical protein [Silicibacter sp. TrichCH4B]
 gi|259345563|gb|EEW57417.1| conserved hypothetical protein [Silicibacter sp. TrichCH4B]
          Length = 467

 Score =  322 bits (825), Expect = 9e-86,   Method: Composition-based stats.
 Identities = 120/476 (25%), Positives = 205/476 (43%), Gaps = 49/476 (10%)

Query: 9   GVAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLN 68
           GVA    Q            + S GC   + DS R+     ++GY        AD +++N
Sbjct: 19  GVAPRPDQP--------TLGMVSLGCPKALVDSERILTRLRAEGYGISADYAGADAVIVN 70

Query: 69  TCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVV 128
           TC   + A  +    +G    LK +         V+V GC+  AE + I    P +  V 
Sbjct: 71  TCGFLDSAKAESLEAIGEA--LKENGK-------VIVTGCLG-AEPDYIREHHPRILAVT 120

Query: 129 GPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
           GP  Y ++ + + +A              D F  L    G     R   ++L I EGC+ 
Sbjct: 121 GPHQYEQVLDAVHQA---------VPPSPDPFVDLLPATGVSLTPRHF-SYLKISEGCNH 170

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-------RGKGLD 241
            C FC++P  RG   SR    V+ EA KL+  GV E+ ++ Q+ +A+            D
Sbjct: 171 KCKFCIIPDMRGKLASRPGHAVLREAEKLVGAGVRELLVISQDTSAYGLDRKYDVNPWKD 230

Query: 242 GE-KCTFSDLLYSLSEIKG----LVRLRYTTSHPRDMSDCLIKAHGDLDV-LMPYLHLPV 295
           GE +   +DL  +L E+       +RL Y   +P      +I    D +  ++PYL +P 
Sbjct: 231 GEIRSHITDLSRALGELAPADELWIRLHYVYPYPHV--REMIPLMADPNNAVLPYLDIPF 288

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
           Q     +L+ M R   A +    I   R + PD+ + S FIVG+PGET+ +F+  +D +D
Sbjct: 289 QHAHPDVLRRMARPAAAAKTLDEIRAWRDICPDMTLRSTFIVGYPGETETEFQHLLDWMD 348

Query: 356 KIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIE 415
           +    +   FKY    G   +++ + V + VK +R      K +    +   A VGQ ++
Sbjct: 349 EAQLDRVGCFKYENVDGARSNDLPDHVADEVKQDRWERFMAKAQAISEAKLAAKVGQTLQ 408

Query: 416 VLIEKHGKEK---GKLVGRSPWLQSVVLNSK---NHNIGDIIKVRITDVKISTLYG 465
           V+++   ++     +    +P +   +         ++GD++ V + +     L+G
Sbjct: 409 VIVDDIDEDGIATCRTKADAPEIDGNLFIDDGTEGLSVGDLVTVEVDEAGEYDLWG 464


>gi|322823384|gb|EFZ29150.1| tRNA modification enzyme, putative [Trypanosoma cruzi]
          Length = 530

 Score =  322 bits (825), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 121/450 (26%), Positives = 214/450 (47%), Gaps = 25/450 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
             F+ ++GC  NV D   M  +    GY   +  +DAD+ +LN+C ++  + E   S + 
Sbjct: 50  TVFIHTFGCSHNVSDGEYMAGLLAQAGYRVTDVFNDADVYLLNSCTVKNPSEEHFISMMN 109

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R+R              +VVAGCV QA+      +   V+ V+G +   R+ E++  A  
Sbjct: 110 RVRA---------TGKPLVVAGCVPQADPRN--TQWDDVS-VIGVRNIDRVGEVIHEALQ 157

Query: 146 GKRV----VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           G  V    V+   + +  F +L  +D    R+      + I  GC   CT+C     RG 
Sbjct: 158 GHCVRLIGVNEHANNKQDFNKLPPLDLPKIRRNRFIEIIPISVGCLNHCTYCKTKQARGD 217

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG-L 260
             S  +  +V   R ++  GV EI +  ++V A+   G+D +      L   + EI+G  
Sbjct: 218 LRSWPIESIVLRVRSVLKEGVKEIRITSEDVGAY---GIDIKTDIVCLLRAIVKEIQGTE 274

Query: 261 VRLRYTTSHPRDMSDCLIK--AHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           V +R   S+P  +   L    A      +  ++H+P+QSGS+RIL +M R +T  E+ + 
Sbjct: 275 VMMRVGMSNPPYLLRHLDDFAAILRHPNVYEFVHIPIQSGSNRILNAMQREYTLEEFHEC 334

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           + RIRSV P++ +++D I  FPGE + ++R TM+L D + +      ++ PR  TP ++M
Sbjct: 335 VHRIRSVVPNVTLATDIICAFPGEGEAEWRETMELCDHVRFPVLNITRFYPRRNTPAASM 394

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSV 438
            +Q+  +V   R   L +          D  VG++  V + +   +K  LVG +     V
Sbjct: 395 -KQIPTDVAKRRTSELTEFFN--SYRTLDHMVGEVHSVALLETAHDKHHLVGHTKAYVQV 451

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           +++ +   +G+ + V I      ++ G ++
Sbjct: 452 LVDPQEARLGETVTVVIMSTTKYSVVGRVL 481


>gi|218779734|ref|YP_002431052.1| RNA modification enzyme, MiaB family [Desulfatibacillum
           alkenivorans AK-01]
 gi|218761118|gb|ACL03584.1| RNA modification enzyme, MiaB family [Desulfatibacillum
           alkenivorans AK-01]
          Length = 437

 Score =  322 bits (825), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 120/448 (26%), Positives = 216/448 (48%), Gaps = 17/448 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           +P+ F++ + GC++N Y+S  +  +    G  RV     AD++V+NTC +  KA+ +   
Sbjct: 1   MPKTFYINTLGCKVNQYESDNLACILEKAGMTRVGEKQKADVVVVNTCTVTHKASTQSRQ 60

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            L +        IK     LV+  GC AQ+E E +      V+ VV     + +P+++E+
Sbjct: 61  ALRQA-------IKAHKGALVLATGCYAQSEPEAL-ESIKGVSFVVDNTQRHLIPQIIEK 112

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
               ++  +             + D      R    FL IQ+GC+ FCT+C+VPYTRG  
Sbjct: 113 -ESPRKSAEKLCGEIRFHHDFPVPDIPVPGTRS-RPFLKIQDGCNAFCTYCIVPYTRGPS 170

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            S     V+     L   G  EI   G ++  + G+ LD        LL  L       R
Sbjct: 171 RSMPWDAVLRHVAHLTGQGFGEIVFTGIHLG-YYGQDLDP-PTDLVSLLKELEGRMESGR 228

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LR ++  P+++S  L+        + P+LHLP+QSG   IL+ MNR ++A  + +++  +
Sbjct: 229 LRLSSIEPKEVSQDLLDLMAGSKRICPHLHLPLQSGDSEILERMNRPYSAEFFEELVHNV 288

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R   P+  I  D +VGFPGET++ F+  + L++++  +    F YS R GTP +   +QV
Sbjct: 289 RKALPEAGIGVDVLVGFPGETEEHFKTALSLLERLPASYFHVFPYSQRQGTPAAKFPDQV 348

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSVVLN 441
             +V A+R   ++     ++++F+   +G+ +EV +E     + G   G +     V+ +
Sbjct: 349 PPDVLAKRTKIIRGLGGLKRLAFHAGIIGKTVEVCVEGRKDAKTGLHKGVARNYVPVLFS 408

Query: 442 SKNHNI-GDIIKVRITDVKISTLYGELV 468
           +    +   +++V+   +      G ++
Sbjct: 409 ADAPPVKSSLVRVKAEKLTP---KGRVI 433


>gi|328718445|ref|XP_001945556.2| PREDICTED: CDK5 regulatory subunit-associated protein 1-like 1-like
           [Acyrthosiphon pisum]
          Length = 522

 Score =  322 bits (825), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 112/456 (24%), Positives = 206/456 (45%), Gaps = 21/456 (4%)

Query: 16  QIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREK 75
               Q    Q  F+K++GC  N  D   M  +  + GY+       ADL +LN+C ++  
Sbjct: 47  HPPSQVPGTQTIFIKTWGCSHNSSDGEYMAGLLSNYGYKITEDKAIADLWILNSCTVKNP 106

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135
           A +   + +   +              VVVAGCV Q + +    ++     V+G Q   R
Sbjct: 107 AEDHFRNEISTGKK---------SGKFVVVAGCVPQGDQKSPFIQN---LSVIGVQQIDR 154

Query: 136 LPELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCV 194
           + E++E    G  + +     +  K +  + +     RK  +   + I  GC   CT+C 
Sbjct: 155 VVEVVEETLKGHTIRLLGQKKINGKKDGGARLQLPKMRKNKLIEIIAISTGCLNQCTYCK 214

Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL 254
             + RG   S    ++V  A +  + G  E+ L  ++  A+   GLD +      L   +
Sbjct: 215 TKHARGNLGSYPPDEIVQRAIESFNEGAVELWLTSEDTGAY---GLDIQTNLPELLWRLV 271

Query: 255 SEIKGLVRLRYTTSHPRDMSDCL--IKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
           + I     +R   ++P  + + L  I        +  +LH+PVQSGS+++L  M R ++ 
Sbjct: 272 AIIPEGCMMRIGMTNPPYILNHLEEIAKILSHPRVYAFLHVPVQSGSNQVLADMKREYSI 331

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
            E+  +++ +R   P ++I++D I GFP ET++DF  TM + +K  +   F  ++ PR G
Sbjct: 332 EEFETVVNFLRQRVPGVSIATDIICGFPTETEEDFSETMSVCEKYKFPSLFINQFYPRKG 391

Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS 432
           TP + M  ++  ++   R   L +       +  D  +G+I E+LI +  K   + +G +
Sbjct: 392 TPAARMP-KIPTDMVKIRTKRLTELF--HSYTTYDHRIGEIQEILITEEAKNGIEFIGHN 448

Query: 433 PWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            + + V++      +G  I+V +   K   L  E+V
Sbjct: 449 KYYEQVLVAKDPELMGKCIEVIVKSAKKHCLIAEMV 484


>gi|261350294|ref|ZP_05975711.1| putative 2-methylthioadenine synthetase [Methanobrevibacter smithii
           DSM 2374]
 gi|288861078|gb|EFC93376.1| putative 2-methylthioadenine synthetase [Methanobrevibacter smithii
           DSM 2374]
          Length = 426

 Score =  321 bits (824), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 126/446 (28%), Positives = 225/446 (50%), Gaps = 26/446 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + ++ +YGC  N  D+  M  +      + V+S + AD+I++NTC+++     KV   + 
Sbjct: 2   KVYIDTYGCTFNKADAQIMGGVLKENHIDLVDSPELADVIIVNTCYVKLPTENKVVYKIQ 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           +++           D  V+V+GC+ + + E++ + +P  +  +GP    +  +++     
Sbjct: 62  QLQEK-------FPDKKVIVSGCMVEIDPEKLEKVAPDCS-WIGPHQLNKTADVVNGTYC 113

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G+ + +  +S + K     + DG       +   + I EGC   CTFC   + RG   S 
Sbjct: 114 GRVIRECGFSKDSKVGVPKVSDG------SLIHIIQIAEGCLGACTFCCTRFARGPLNSY 167

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            +  +V EA+K ID+G  EI L  Q+  A+      GEK   SDL+  ++ + G  R+R 
Sbjct: 168 PIKDIVAEAKKAIDDGAVEIQLTAQDTAAFGYDS--GEK--LSDLIKEVANLDGEFRVRV 223

Query: 266 TTSHPRDM---SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
              HP+D+    D +I A      +  ++HLPVQ+GS+++L  M R HT  +Y  I+ + 
Sbjct: 224 GMMHPKDILNNVDEIIDAI-KHPKVYNFIHLPVQTGSNKVLSEMRRGHTLDQYLDIVSKF 282

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           +S  PD+ ++ D IVG+P E+D+DF+ T+DL+  I  +     KY  R G   S++ E +
Sbjct: 283 KSEIPDLTLAVDIIVGYPTESDEDFQLTVDLLRNIKPSLIHLSKYQHRKGAVSSSLKE-I 341

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
              V  +R   L +   E     N   VG +   ++ + G + G  + ++     V+++ 
Sbjct: 342 PHEVMKKRSRNLSRIKTEITEEENKELVGSVQNAVVVEVGSKGG-FIAKTDSYIPVIVDG 400

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
              N+GD IKV+ITD   + L G++V
Sbjct: 401 --VNLGDFIKVKITDATATYLKGDVV 424


>gi|288922654|ref|ZP_06416830.1| RNA modification enzyme, MiaB family [Frankia sp. EUN1f]
 gi|288346012|gb|EFC80365.1| RNA modification enzyme, MiaB family [Frankia sp. EUN1f]
          Length = 326

 Score =  321 bits (824), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 137/336 (40%), Positives = 191/336 (56%), Gaps = 10/336 (2%)

Query: 36  MNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRI 95
           MNV+DS R+  +  S GY       DAD++V NTC +RE A  ++Y  LG +   K    
Sbjct: 1   MNVHDSERLAGLLESAGYVPAAQGADADVVVFNTCAVRENADNRLYGNLGHLYPTK---- 56

Query: 96  KEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYS 155
           K    + + V GC+AQ +   IL R+P V+VV G    +RLP LLERAR           
Sbjct: 57  KNNPGMQIAVGGCLAQKDRSVILDRAPWVDVVFGTHNLHRLPVLLERARHNAAAQVEIAE 116

Query: 156 VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEAR 215
             + F           R    +A+++I  GCD  CTFC+VP  RG E  R    V+ E  
Sbjct: 117 ALEVF----PSSLPARRASHHSAWVSISVGCDNTCTFCIVPSLRGGERDRRPGDVLAEVE 172

Query: 216 KLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSD 275
            L+  G  EITLLGQNVN+  G+ L G+   F+ LL +   I+GL R+R+T+ HPRD +D
Sbjct: 173 ALVAEGALEITLLGQNVNS-YGRSL-GDPGAFARLLRACGNIEGLERVRFTSPHPRDFTD 230

Query: 276 CLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDF 335
            +I+A      + P LH+P+QSGSD +L+ M R +    +  I++R+R   P  AI++D 
Sbjct: 231 DVIEAMAQTPNVCPQLHMPLQSGSDAVLRRMRRSYRRERFLGIVERVREAIPHAAITTDI 290

Query: 336 IVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
           IVGFPGET++DF  T+D+V    +A AF+FKYSPR 
Sbjct: 291 IVGFPGETEEDFADTLDVVRAARFAGAFTFKYSPRP 326


>gi|188996972|ref|YP_001931223.1| MiaB-like tRNA modifying enzyme [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188932039|gb|ACD66669.1| MiaB-like tRNA modifying enzyme [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 438

 Score =  321 bits (824), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 111/435 (25%), Positives = 206/435 (47%), Gaps = 15/435 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    + GC+MN +++  +E+ F  +GY   +  D AD+ V+NTC +   A       + 
Sbjct: 9   KVAFATLGCRMNQFETSALEEQFQVKGYSITDFEDVADIYVINTCTVTNDADRTSRKIIR 68

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           + +       +   + +VV  GC AQ   EE+  +   +++V+G      + E++E    
Sbjct: 69  QAK-------RRNPNAVVVATGCYAQVSPEELA-KMEEIDLVIGNSHKTAVFEIVENY-I 119

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            ++  +  +      E             G    + +QEGC+ FC+FC++P+ RG   S 
Sbjct: 120 NEKFENKVFIENIFRENQFKTFQISTFFEGARPIIKVQEGCNSFCSFCIIPFARGKVRSA 179

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            + ++V++ + L+D G  EI L G  ++ +   G D ++ T  DLL +L +I+ L R+R 
Sbjct: 180 KIDEIVNQVKILVDKGFKEIVLTGTQLSQY---GYDHKEGTLYDLLKNLVKIENLYRIRL 236

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
           ++    ++ D  I      + + P+ HL +QS  D++L+ M R +T  EY + +++I S 
Sbjct: 237 SSMGINELDDKFIDFLTSEEKIAPHFHLSIQSADDKVLRDMKRNYTVKEYMEKVEKIISK 296

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
           RP+ AI +D I GFP E    F  T+  ++ I +A    F YS R GT      ++V   
Sbjct: 297 RPETAIGTDIITGFPTEDKTAFLNTVKTINNIPFAYIHVFTYSQRDGTTAVKFGDKVLPE 356

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445
            K ER   L++   ++   F    + + +E LI    +     +  +       + ++  
Sbjct: 357 EKKERTRILREISYQKNYEFRKRFINKDLEFLI--ISERDDYKIAVTGNYIHAKIKTEKA 414

Query: 446 NIGDIIKVRITDVKI 460
            I  IIK  +T++  
Sbjct: 415 -INTIIKANLTEIGK 428


>gi|224371641|ref|YP_002605805.1| putative methylthioadenine synthetase [Desulfobacterium
           autotrophicum HRM2]
 gi|223694358|gb|ACN17641.1| putative methylthioadenine synthetase [Desulfobacterium
           autotrophicum HRM2]
          Length = 437

 Score =  321 bits (824), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 116/423 (27%), Positives = 209/423 (49%), Gaps = 16/423 (3%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           F++ + GC++N Y+S  +     + G+ RV +++ A + ++NTC +  +AA +    +  
Sbjct: 4   FYITTLGCKVNQYESNGIATTLINNGWTRVEAVEKASVCIVNTCAVTARAAVQSRQAIRS 63

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           I       I+      V+V GC AQ E + ++ +   V+ VVG    +++ E L     G
Sbjct: 64  I-------IRTNPGAKVIVTGCHAQTEPD-LVGKIEHVHSVVGHGDKFKIAETLISPDQG 115

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYN--RKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
              +D+    E  +  L+   G           A+L IQ+GC+ FC++C+VPY RG   S
Sbjct: 116 ---IDSLPFPEKSYCTLTQFQGFEPAVTGNMTRAYLKIQDGCNAFCSYCIVPYARGRSRS 172

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
             + +V+     L + G  E+ L G +  AW       EK +F DLL ++ E   + R+R
Sbjct: 173 MPMDEVLAHLAYLHEKGYKEVILTGIHTGAWGADFP--EKRSFLDLLKTIVEKSPIHRVR 230

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
            ++  P ++SD +I    D  ++  + H+P+QSG D ILK M R +    +R+++ +I  
Sbjct: 231 ISSIEPIEISDEIIGLAADHAIICDHFHIPLQSGDDGILKRMGRPYDTGYFRELVLKIHE 290

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             P  A+  D + GFPGE+D  F  T  L+  +  +    F +SPR GTP  +  ++V  
Sbjct: 291 TMPRAAMGIDVLQGFPGESDQAFERTHALLAGLPISYLHVFPFSPRKGTPAFDYPDRVAP 350

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKGKLVGRSPWLQSVVLNSK 443
            +  +R   ++   RE++ +F    +GQ    +I E+  +E G L   +    ++++   
Sbjct: 351 GILKQRCAAMRALGREKRRAFELGNIGQRFGAIIQEQRDRETGMLKAVTSNYLTLLVKGG 410

Query: 444 NHN 446
           +  
Sbjct: 411 DDL 413


>gi|197103594|ref|YP_002128971.1| 2-methylthioadenine synthetase [Phenylobacterium zucineum HLK1]
 gi|196477014|gb|ACG76542.1| 2-methylthioadenine synthetase [Phenylobacterium zucineum HLK1]
          Length = 465

 Score =  321 bits (824), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 124/420 (29%), Positives = 197/420 (46%), Gaps = 29/420 (6%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
             + ++GC++N Y+S  +       G         +D IV NTC +  +A  +    + +
Sbjct: 49  VDIVTFGCRLNAYESEVIRKRAAEDGL--------SDAIVFNTCAVTGEAVRQARQAIRK 100

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
            R       +E     V+V GC AQ + +        V++V+G     +       A  G
Sbjct: 101 AR-------RERPGAKVIVTGCAAQIDPDAFAA-MDEVDLVLGNAEKSQAGSYAPTAEAG 152

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           +  V+   SV +    L  +DG  +R R   A++ +Q GCD  CTFC++PY RG   S  
Sbjct: 153 RVRVNDIMSVRETAGHL--IDGLKDRAR---AYVEVQNGCDHRCTFCIIPYGRGNSRSAP 207

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
             +VV++ R+L   G  E+ L G +V +W G  L G       +   L    GL RLR +
Sbjct: 208 AGEVVEQVRRLAGEGYQEVVLTGVDVTSW-GADLPGAPTLGQLVGRILKLAPGLPRLRLS 266

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
           +    ++   L++   +   LMPYLHL +Q+G D ILK M RRH+  +  +++  +R+VR
Sbjct: 267 SIDAAEIDADLLRLLAEEPRLMPYLHLSLQAGDDMILKRMKRRHSRADALRLVADVRAVR 326

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           PD+A  +D I GFP ETD+ F  T+ LV++ G A    F +SPR GTP + M  Q+   V
Sbjct: 327 PDVAFGADLIAGFPTETDEMFENTLRLVEEAGLAFLHVFPFSPRPGTPAARMP-QLPREV 385

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHN 446
              R   L+           +A VG+ +  L+E+ G        R+     +    +   
Sbjct: 386 VKARAARLRAAGEAALDRHLEAQVGRTLLGLVERPG------FARAEDFTEIAFTGEAAE 439


>gi|304392646|ref|ZP_07374586.1| hypothetical protein R2A130_2246 [Ahrensia sp. R2A130]
 gi|303295276|gb|EFL89636.1| hypothetical protein R2A130_2246 [Ahrensia sp. R2A130]
          Length = 434

 Score =  321 bits (824), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 128/442 (28%), Positives = 209/442 (47%), Gaps = 23/442 (5%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V ++GC++N Y++  ME    + G   ++       +V+NTC + + A       + + R
Sbjct: 10  VVNFGCRLNTYEAAVMEREARAAGLAELDGG----AVVINTCAVTQSAVADARHAIRKAR 65

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
                  +E  D  ++V+GC AQ E      +   V++V+G +             FG  
Sbjct: 66  -------RERPDARIIVSGCAAQTEAAT-FEQMDEVDLVLGNEEKLHANSYRALPDFGVN 117

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRG-VTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
             +    V D F+         +   G   AF+ +Q GCD  CTFC++PY RG   S   
Sbjct: 118 QFEKVR-VADIFDVQEAASHMVDAIDGRSRAFVQVQNGCDHRCTFCIIPYGRGNSRSVPA 176

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
             VV++ ++L+ NG  E  L G ++ +W G  L G       +   L ++  L RLR ++
Sbjct: 177 GGVVEQVKRLVGNGYKEAVLTGVDLTSW-GCDLPGAPKLGRLVQAILKQVPDLTRLRLSS 235

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
               ++ + L++A G    LMP+LHL +QSG D ILK M RRH   +  +  + +R+VRP
Sbjct: 236 IDSIEVDEPLMEALGSEQRLMPHLHLSLQSGDDMILKRMKRRHLRDDTIRFCEDVRAVRP 295

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
           D+   +D I GFP ETD  F  +M +VD+ G      F YSPR GTP + M   VD    
Sbjct: 296 DVMFGADIIAGFPTETDAMFDNSMRIVDEAGLTHLHVFPYSPRTGTPAAKMPP-VDGATI 354

Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHN- 446
             R   L++K  E+  ++  + VG   +VL+E         +GR+     V ++      
Sbjct: 355 KRRAKALREKGSERMNAYLASRVGTTAQVLMETGS------IGRTEQFTPVSVDGGEALD 408

Query: 447 IGDIIKVRITDVKISTLYGELV 468
            G ++ +++T    + L G  +
Sbjct: 409 AGTLLDLQLTGHDGTRLSGTPL 430


>gi|87310727|ref|ZP_01092854.1| hypothetical protein DSM3645_06861 [Blastopirellula marina DSM
           3645]
 gi|87286484|gb|EAQ78391.1| hypothetical protein DSM3645_06861 [Blastopirellula marina DSM
           3645]
          Length = 432

 Score =  321 bits (824), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 119/455 (26%), Positives = 212/455 (46%), Gaps = 37/455 (8%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           +  +     + GC++N Y++  + +   + GY    + + ADL ++NTC +  +   K  
Sbjct: 5   MTEKALKTVTLGCKVNQYETELVREGLVTAGYRDAITEEPADLCIVNTCTVTNEGDSKSR 64

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             + R+        ++  D  +VV GC A     E+     +V VV   +    +P+LL 
Sbjct: 65  QVIRRLA-------RDNPDARIVVMGCYATRAPAELAVLPNVVEVV---ENKREIPDLLG 114

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           R                 F  + +  G         AF+ +Q+GC   CTFC++P  R  
Sbjct: 115 R-----------------FGVIDVPTGLSTFGDRHRAFVKVQDGCLLRCTFCIIPTVRPE 157

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK-----CTFSDLLYSLSE 256
             SRS  +++ E  +L DNG  EI L G ++    G   +  K        + L+ SL+ 
Sbjct: 158 MYSRSSEEIIAEVARLADNGFREIVLTGIHLG-HYGVDQNRGKSKAEWMRLAHLVRSLAR 216

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLD-VLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
           + G  R+R ++    +++  LI+  G+    + P+LH+ +QSGSD +L+ M RR  A  +
Sbjct: 217 LDGDFRIRMSSIEATEVTRELIEVMGEFPDRVCPHLHISMQSGSDSVLRRMRRRWGAQRF 276

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
                 +++     AIS+D IVGFPGET+ +F  T  +  ++G+++   F +SPR GTP 
Sbjct: 277 VDRCKLLQTSLDQPAISTDIIVGFPGETEAEFEETCAVSREVGFSKIHIFPFSPRKGTPA 336

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGK--LVGRS 432
           + M + +  +VK++R   L       +  + D+ VG+ +EVL E     E G+  + G +
Sbjct: 337 AEMPDHIPGDVKSDRRRRLADVEAASRQIYFDSLVGRQLEVLGESSETDESGRALVRGTA 396

Query: 433 PWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
                V       ++G++ +V +   +   L   L
Sbjct: 397 CRYAPVTFEGAAGDVGNLRRVLVKSAQADHLIATL 431


>gi|291546206|emb|CBL19314.1| SSU ribosomal protein S12P methylthiotransferase [Ruminococcus sp.
           SR1/5]
          Length = 365

 Score =  321 bits (823), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 117/368 (31%), Positives = 181/368 (49%), Gaps = 18/368 (4%)

Query: 109 VAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDG 168
           +AQ   +EI+   P V+ V+G  +Y  + + LE A  G          E+  +   + D 
Sbjct: 1   MAQRYQKEIIEEVPEVDAVLGTTSYGDIVKALEEAVAGNHF-------EEFRDIDYLPDT 53

Query: 169 GYNR---KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEI 225
           G  R     G   +L I EGCDK CT+C++P  RG   S  + +++ +A  + + GV E+
Sbjct: 54  GSKRVLTTGGHFGYLKIAEGCDKHCTYCIIPKLRGKFRSVPMERLIAQAEDMAEQGVKEL 113

Query: 226 TLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLD 285
            L+ Q      GK L G+K +   LL  L EI+G+  +R    +P ++ D LI+   D  
Sbjct: 114 ILVAQETT-VYGKDLYGKK-SLHILLKKLCEIRGIRWIRILYCYPEEIYDELIETIRDEK 171

Query: 286 VLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDD 345
            +  YL +P+Q  SDRILK M RR +  E   I+ ++R   PDI + +  I GFPGET++
Sbjct: 172 KICHYLDIPIQHASDRILKRMGRRTSKQELIDIVGKLRKEIPDIVLRTTLITGFPGETEE 231

Query: 346 DFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSF 405
           D     + VD++ + +   F YSP   TP + M +QV E VK ER   L +  +E     
Sbjct: 232 DHEELKEFVDEMEFDRLGVFTYSPEENTPAAEMADQVPEEVKEERRDELMELQQEISYDR 291

Query: 406 NDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVLNSKNHNI--GDIIKVRITDVK 459
               +GQ + V+IE    ++   +GR+    P +   +       +  GD  KVR+T   
Sbjct: 292 GQDRIGQELLVMIEGKVADESAYIGRTYGDAPKVDGYIFVQTGELLMTGDFAKVRVTGAL 351

Query: 460 ISTLYGEL 467
              L G L
Sbjct: 352 EYDLIGVL 359


>gi|261879949|ref|ZP_06006376.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
 gi|270333372|gb|EFA44158.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
          Length = 445

 Score =  321 bits (823), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 119/439 (27%), Positives = 195/439 (44%), Gaps = 16/439 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++    + GC++N  ++     M    G       + AD+ ++NTC + E A  K    +
Sbjct: 10  KKAAYYTLGCKLNFSETSTFGKMLEQMGVTSAGKGERADICLINTCSVTEVADRKCRQAI 69

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R+       ++E  D LVVV GC AQ EGE++  +   V++V+G      L + L  A 
Sbjct: 70  HRM-------VREHPDALVVVTGCYAQLEGEKV-SQIDGVDLVLGSNEKADLIQHLSEAW 121

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
              R          K   +        R      FL +Q+GC  FCT+C +P+ RG   +
Sbjct: 122 SDPRAQALHQFRGVKTSDIVSFQPSCARGNRTRYFLKVQDGCSYFCTYCTIPFARGRSRN 181

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
            S++ +V +A +    G  EI L G N+    G         F DL+ +L  ++G+ R R
Sbjct: 182 PSIASLVAQAEEAAAEGGREIVLTGVNI----GDFGRTTGERFIDLVKALDRVEGIQRYR 237

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
            ++  P  + D LI         MP+ H+P+QSGSD +L  M R +    + + I  I+ 
Sbjct: 238 ISSLEPDLLDDELIDYCAHSRAFMPHFHIPLQSGSDEVLTLMRRHYDTALFARKIHLIKQ 297

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             PD  I  D +VG  GE  + F  + + ++ +  +Q   F YS R GT    +   V +
Sbjct: 298 KMPDAFIGVDVMVGCRGEKPEYFEDSYNFLNALPVSQLHVFPYSERPGTAALRIPYVVSD 357

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL---N 441
             K +R   L +   ++  +F    VG+  EVL E+  + K  + G +     V L    
Sbjct: 358 ADKKQRSKRLLELSDQKTQAFYAQYVGREAEVLFERATRGKA-MHGFTDNYIRVELFPRE 416

Query: 442 SKNHNIGDIIKVRITDVKI 460
           ++      II+VR+ D   
Sbjct: 417 AREEFDNQIIRVRLGDFTP 435


>gi|255075877|ref|XP_002501613.1| predicted protein [Micromonas sp. RCC299]
 gi|226516877|gb|ACO62871.1| predicted protein [Micromonas sp. RCC299]
          Length = 435

 Score =  321 bits (823), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 119/450 (26%), Positives = 196/450 (43%), Gaps = 30/450 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +  VK++GC  N  DS  M     + GY+ V   DDAD+ V+NTC ++  +   + + + 
Sbjct: 8   KVHVKTFGCSHNHSDSEFMAGQLGAYGYDLVTDPDDADVWVVNTCTVKNPSQSAMNTVIT 67

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           + +              +V+AGCV Q + +    +      ++G     R+ +++ER   
Sbjct: 68  KGKAQGKK---------LVIAGCVPQGDKKA---KELEDLSLIGVTQIDRIVDVVERTLA 115

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G  V   +         L  +D    R+      L +  GC   CT+C   + RG   S 
Sbjct: 116 GDAVRLLEKKP------LPSLDLPKVRRNEHVEILPLSTGCLGQCTYCKTKHARGELGSY 169

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           S   +V   +  I  GV EI L  ++  A  G  L  +       L ++    G   LR 
Sbjct: 170 SPEALVQRVQTAIAEGVTEIWLSSEDTGA-YGIDLGTDITRLLRDLTAVLPTDGSCMLRL 228

Query: 266 TTSHPRDMSDCLIKAHGD---LDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
             ++P  +   L  A  +      +  +LH+PVQ+GSD +L  M R +   E+ ++ D +
Sbjct: 229 GMTNPPYILAHL-DAVAEAMHHPSVYAFLHIPVQAGSDAVLDRMKREYVVAEFEKVADTL 287

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
            +  P I I++D I GFPGET +D+  TM L  K  + +    ++ PR GTP + M ++V
Sbjct: 288 LAKVPGITIATDIICGFPGETSEDWEKTMALCRKYEFVELHLSQFYPRPGTPAARM-KRV 346

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
           D      R   L   +  +    +DA VG    V +    K+K  LVG +     V+L  
Sbjct: 347 DTKEVKRRSRELTAYI--ESYRPHDALVGTTQRVWVTDVAKDKVSLVGHTKSYVQVLLPG 404

Query: 443 KNH----NIGDIIKVRITDVKISTLYGELV 468
                   +G   +VRI D     + GE++
Sbjct: 405 GEANRARLMGKSAEVRIIDAHRWHVTGEVI 434


>gi|270157773|ref|ZP_06186430.1| MiaB family RNA modification enzyme [Legionella longbeachae D-4968]
 gi|289163959|ref|YP_003454097.1| hypothetical protein LLO_0613 [Legionella longbeachae NSW150]
 gi|269989798|gb|EEZ96052.1| MiaB family RNA modification enzyme [Legionella longbeachae D-4968]
 gi|288857132|emb|CBJ10948.1| putative conserved hypothetical protein [Legionella longbeachae
           NSW150]
          Length = 436

 Score =  321 bits (823), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 127/457 (27%), Positives = 210/457 (45%), Gaps = 37/457 (8%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           +  +    S GC   + DS R+     +QGYE V+S  DA ++V+NTC   + A ++   
Sbjct: 1   MNHKVGFVSLGCPKALVDSERIITQLRAQGYELVSSYQDAGVVVINTCGFIDSAVKESLD 60

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +      K +  + G    V+V GC+  A+ + I    P V  + G   Y  +   + +
Sbjct: 61  TI------KEAMAENGR---VIVTGCLG-AKADIIKEACPDVLHISGAHAYEEVVNAVHQ 110

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
                          D F +L I   G        A+L I EGC++ CTFC++P  RG  
Sbjct: 111 HLP---------PPTDPFTQL-IPPQGIKLTPRHYAYLKISEGCNQKCTFCIIPTMRGKL 160

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK---------CTFSDLLYS 253
            S  ++QV+ EA++L D GV EI ++ Q+ +A  G     +            F DL   
Sbjct: 161 QSYPMAQVLTEAKRLKDAGVHEILVISQDTSA-YGVDTRYQPVNWQGKTINTRFFDLCEQ 219

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
           L ++   +RL Y   +P       +       +++PYL +P+Q  + +ILK+M R  ++ 
Sbjct: 220 LGQLGIWIRLHYVYPYPHVDEIIPLM---RDGLILPYLDIPLQHANSKILKTMKRPASSE 276

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
                I   R + PDI + S FIVGFPGET+++F   +D +++    +   FKYSP  G 
Sbjct: 277 NTLLRIASWREICPDITLRSTFIVGFPGETEEEFEELLDFLEEAQLDRVGCFKYSPVEGA 336

Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGR 431
             + + + V E +K ER     +   E      ++ VG+   V+I++   ++   +  G 
Sbjct: 337 KANELSDPVPEEIKEERYHRFMQLQAEISRDKLESKVGKTQTVIIDEIHGDQIIARSKGD 396

Query: 432 SPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGE 466
           +P +  +V+   N  I  G   +V ITD     LY E
Sbjct: 397 APEIDGLVILPPNPGIKSGSFAEVIITDSDDYDLYAE 433


>gi|319409457|emb|CBI83106.1| conserved hypothetical protein [Bartonella schoenbuchensis R1]
          Length = 427

 Score =  321 bits (822), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 120/441 (27%), Positives = 194/441 (43%), Gaps = 24/441 (5%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           + ++GC++N Y+S  + +   S G          D I+ NTC +  +A  +    + + +
Sbjct: 5   IVTFGCRLNSYESEVIREKSASAGL----DKLKGDAIIFNTCAVTAEAVRQAKQAIRKAK 60

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
                  +E     +VV GC AQ E E     +  V++V+G +         +   FG  
Sbjct: 61  -------RENPHARIVVTGCAAQTEAENFALMT-EVDLVLGNEEKLHTHSYRQFPDFGIN 112

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRG-VTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
             D    V D  E  +I         G    F+ +Q GCD  CTFC++PY+RG   S  +
Sbjct: 113 -HDEKLRVNDIMEVRNIAPHMVGAIEGRTRVFVQVQNGCDHRCTFCIIPYSRGPSRSVPM 171

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
             ++++ +K I NGV EI L G ++ +  G  L G+      +   L  +  L RLR ++
Sbjct: 172 GTIIEQIKKFIGNGVQEIVLTGVDLTS-YGADLPGKASLGKLVSAILHHVPDLPRLRLSS 230

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
               ++   LI        +MPYLHL +Q+GS+ ILK M RRH      Q    +R+ RP
Sbjct: 231 IDSIEIDQELIDLLAYEKRIMPYLHLSLQAGSNMILKRMKRRHLRENAIQFCQDLRAKRP 290

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
            +   +D I GFP ET++ F+ ++ L+D+        F +SPR GTP + M  QV+  + 
Sbjct: 291 TMVYGADLIAGFPTETEEMFQNSLALIDECNLTHLHVFPFSPREGTPAARMP-QVNREII 349

Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNI 447
             R   L+   ++               +L+EK        +GR+       +       
Sbjct: 350 KTRAEKLRNAGKKAYQKHLSHSKNTQQIILVEKDE------IGRTEDYTLTHIKGT--KA 401

Query: 448 GDIIKVRITDVKISTLYGELV 468
           G IIK  I     + L  E +
Sbjct: 402 GTIIKALIIGHDGNKLIAEHI 422


>gi|42520370|ref|NP_966285.1| MiaB-like tRNA modifying enzyme [Wolbachia endosymbiont of
           Drosophila melanogaster]
 gi|42410108|gb|AAS14219.1| MiaB-like tRNA modifying enzyme [Wolbachia endosymbiont of
           Drosophila melanogaster]
          Length = 408

 Score =  321 bits (822), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 126/439 (28%), Positives = 217/439 (49%), Gaps = 36/439 (8%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V ++GC++N Y+S  +++       E        +++V+++C +  +A  +V   + +I 
Sbjct: 4   VITFGCRLNFYESELIKEALKKAKRE--------NVVVVHSCAVTNEAERQVKQKIRKI- 54

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
                  K   +  ++V GC  Q +  E+    P V+ V+G Q   +    L        
Sbjct: 55  ------YKNDPNKEIIVVGCAVQLDP-EVYSSIPGVSKVLGNQDKLKAENYLLN------ 101

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
             D    V D      +++G  ++ R   AF+ IQ GC+  CTFC +   RG   S  ++
Sbjct: 102 --DDKILVSDNQVEPVLINGFEDKSR---AFIEIQNGCNHSCTFCSITEARGNNRSVPIN 156

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
            ++++ R  ++NG  E+   G ++  + G  L G+    S +   L +I  L RLR ++ 
Sbjct: 157 SIIEQIRIFVENGYQEVVFTGVDITDF-GTDLLGKPSLGSMIRRVLKDIPELKRLRLSSI 215

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
              ++ D L+    +   LMP+LHL +QSG++ ILK M RRH   +  +   +++S+RP+
Sbjct: 216 DVAEVDDELMDLIANESRLMPHLHLSLQSGNNLILKRMKRRHNREQVIEFCHKMKSLRPN 275

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           IA  +D I GFP ETD+ F+ T+DL+ K       +F YS R  TP + M  QV ENV+ 
Sbjct: 276 IAFGADIIAGFPTETDEMFQDTVDLLKKTNIVYLHAFPYSERKNTPAARMP-QVPENVRK 334

Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIG 448
           ER+  L++  +E   SF  + +     VL+E++       VGR+     + L SK     
Sbjct: 335 ERVKNLREVNKEIMSSFCQSLINTKQSVLVEQNN------VGRTENFALIKLESKAQAK- 387

Query: 449 DIIKVRITDVKISTLYGEL 467
            I+KV +  V+ + L G +
Sbjct: 388 SIVKVNVKGVENNYLIGNI 406


>gi|330835295|ref|YP_004410023.1| RNA modification protein [Metallosphaera cuprina Ar-4]
 gi|329567434|gb|AEB95539.1| RNA modification protein [Metallosphaera cuprina Ar-4]
          Length = 418

 Score =  321 bits (822), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 118/445 (26%), Positives = 213/445 (47%), Gaps = 30/445 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + + ++YGC +N  D+  M  +   + +E V +++ AD++V+NTC +R +  EK+   + 
Sbjct: 2   KVYFETYGCALNKGDTYSMMSLLRERNHEIVETLEGADVVVINTCAVRMETEEKMKKRIR 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +               +V+AGC+  A+   ++      + ++GPQ+     ++++    
Sbjct: 62  ELSKTGKK---------LVIAGCLTGAQPG-LVSSLSPSSSMIGPQSI---SDIVKVVES 108

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            +RV+  D        R+           G+ + + I++GC   C FC+    R    S 
Sbjct: 109 NERVISLDSKTPSILPRV---------FDGLISVIPIEDGCAGNCNFCITKLARRNLRSY 159

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            L  +V+  +++I  G  EI L GQ+  A  G  + G K T  D++  ++ ++G   +R 
Sbjct: 160 PLRNIVETVKRMISQGAKEIELTGQDT-AVYGLDM-GGKVTLPDVVKEVASLEGDFMIRV 217

Query: 266 TTSHPRDMSDCL--IKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
               P      L  I    +   +  + H+PVQSG+D++L+ MNR++T  E+R I+  IR
Sbjct: 218 GMMTPEMAMRHLDSILEAWENPKVYKFFHIPVQSGNDKVLREMNRKYTVDEFRAIVKEIR 277

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
                + I++D IVG PGE D  F  T++L+ ++ + +     YS R  T  S ML QV 
Sbjct: 278 KKFRLVNITTDIIVGHPGEDDSAFEDTLNLMKELRFERIHIAMYSIRPNTRSS-MLAQVP 336

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
             +K ERL        E     +   +G+ + VL  + GK+   ++GR+     V+L   
Sbjct: 337 GPIKKERLKRAVSLYEELSREVHKEYLGRQMRVLALERGKDD-TIIGRTINYIPVIL--S 393

Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468
           +  +G+   V+I D     L GE+V
Sbjct: 394 DAVLGNWYDVKIVDSSFFDLRGEIV 418


>gi|254382132|ref|ZP_04997494.1| conserved hypothetical protein [Streptomyces sp. Mg1]
 gi|194341039|gb|EDX22005.1| conserved hypothetical protein [Streptomyces sp. Mg1]
          Length = 495

 Score =  321 bits (822), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 129/488 (26%), Positives = 202/488 (41%), Gaps = 50/488 (10%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +   + + GC  N  DS  +     + G+E V    DAD+ V+NTC   E A +     L
Sbjct: 5   RTVALVTLGCARNEVDSEELAGRLAADGWELVEDAADADVAVVNTCGFVEAAKKDSVDAL 64

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
               +LK+     G    VV  GC+A+  G+E+    P  + V+G   Y  + + L+   
Sbjct: 65  LEANDLKD----HGKTQAVVAVGCMAERYGKELAEALPEADGVLGFDDYADISDRLQTIL 120

Query: 145 FGK------------------------------RVVDTDYSVEDKFERLSIVDGGYNRKR 174
            G                                  + + +  D  E L+   G     R
Sbjct: 121 NGGIHASHTPRDRRKLLPISPAARQDAEVALPGHAQEPEAAPADLPEGLAPASGPRAPLR 180

Query: 175 G-----VTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLG 229
                   A + +  GCD+ C+FC +P  RG  ISR  S V+ E R L + GV EI L+ 
Sbjct: 181 RRLDKSPVASVKLASGCDRRCSFCAIPSFRGSFISRRPSDVLGETRWLAEQGVKEIMLVS 240

Query: 230 QNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMP 289
           +N N   GK L G+      LL  L+E+ G+ R+R +   P +M   LI        ++P
Sbjct: 241 EN-NTSYGKDL-GDIRLLETLLPELAEVDGIERVRVSYLQPAEMRPGLIDVLTSTPKVVP 298

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           Y  L  Q  +  +L++M R      + +++D IR   P   + S+FIVGFPGE + DF+ 
Sbjct: 299 YFDLSFQHSAPNVLRAMRRFGDTDRFLELLDTIRGKAPQAGVRSNFIVGFPGEKESDFKE 358

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDAC 409
               +          F YS   GT       ++DE+  AERL  +Q+   E      +  
Sbjct: 359 LERFLTHARLDAIGVFGYSDEDGTEAVTYEGKLDEDTIAERLAHMQRLAEELTSQRAEER 418

Query: 410 VGQIIEVL---IEKHGKEKGKLVGR----SPWLQS-VVL-NSKNHNIGDIIKVRITDVKI 460
           +G+ +EVL   +E   ++     GR    +P     VV  +S     G I+  ++     
Sbjct: 419 IGETLEVLVESVESVDEDSEGAYGRAAHQAPETDGQVVFTDSTGLVPGRIVTAKVVGTLG 478

Query: 461 STLYGELV 468
             L  E +
Sbjct: 479 VDLVAEPL 486


>gi|303245617|ref|ZP_07331900.1| MiaB-like tRNA modifying enzyme YliG [Desulfovibrio fructosovorans
           JJ]
 gi|302492880|gb|EFL52745.1| MiaB-like tRNA modifying enzyme YliG [Desulfovibrio fructosovorans
           JJ]
          Length = 432

 Score =  321 bits (822), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 123/447 (27%), Positives = 185/447 (41%), Gaps = 29/447 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC  N  D+         +    V+    ADL+V+NTC     A E+    +G
Sbjct: 6   KVHAVSLGCPKNRVDTETALGALPFRT-VMVDDPAAADLVVVNTCAFIAPAVEES---VG 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            I  L  +  +      + V GC+    GEE+    P V++   P     +P  L  A  
Sbjct: 62  AILELAATIRECSPRPRLAVMGCLPARYGEELREGLPEVDIWGLPTELDLIPGRLATALG 121

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                D D              G  +      A+L I EGCD  C +C +P  RG   SR
Sbjct: 122 ----ADADAPA-----------GRRSSTPPSYAYLKIAEGCDHACRYCTIPAIRGKLASR 166

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            +  ++ EA+ LID G  E+ L+ Q+V A  G+ L G K     LL  L  + GL  LR 
Sbjct: 167 PIDGLITEAKGLIDQGARELVLVAQDVTA-YGRDL-GMKEGLKALLEKLLPLPGLSWLRL 224

Query: 266 TTSHPRDMSDCLIKAHGDLDV-LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
              +P  +++ L+          +PY  +P Q     +L +M R   A +   I+DR+R 
Sbjct: 225 LYLYPSGVTESLLSFLAGAGRPFVPYFDIPFQHVHPEMLAAMARP-KAADADTIVDRVRK 283

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             PD A+ S FIVG PGE    F A +  V +        F Y    GTP + M  QV  
Sbjct: 284 HFPDAALRSTFIVGLPGEKKAHFEALLAFVKRTRLMHVGVFPYHREDGTPAATMPGQVRR 343

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGR----SPWLQSV- 438
           +VK  R+  +    +E      +   G   EVL++  HG+  G  +GR    +P +  V 
Sbjct: 344 DVKERRMAAIMAAQKEISADLLERYAGTEQEVLVDAVHGEWPGLHIGRCWFQAPEIDGVT 403

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYG 465
            ++      G ++   I + K   +  
Sbjct: 404 YVSGPGVAPGAMVSATIEETKDYDVVA 430


>gi|159185331|ref|NP_355629.2| hypothetical protein Atu2694 [Agrobacterium tumefaciens str. C58]
 gi|159140586|gb|AAK88414.2| conserved hypothetical protein [Agrobacterium tumefaciens str. C58]
          Length = 424

 Score =  321 bits (822), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 121/438 (27%), Positives = 191/438 (43%), Gaps = 28/438 (6%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
             V ++GC++N Y+S  M       G          + +++NTC +  +A  +    +  
Sbjct: 4   VEVITFGCRLNTYESEVMRAEAEKAGLN--------NAVLVNTCAVTGEAVRQARQAI-- 53

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
                    ++     ++V GC AQ E ++     P V+ V+G +   +         FG
Sbjct: 54  -----RRARRDNPHARIIVTGCAAQTE-KQTFADMPEVDAVLGNEEKLKSASYRALPDFG 107

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRG-VTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
               +    V D     +          G V AF+ +Q GCD  CTFC++PY RG   S 
Sbjct: 108 VSA-EEKLRVNDIMSIKATAPQMVKHIDGHVRAFIQVQNGCDHRCTFCIIPYGRGNSRSV 166

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            +  VVD+AR+L ++G CEI L G +  +  G  L GE          L ++  ++RLR 
Sbjct: 167 PMGAVVDQARRLTESGYCEIVLTGVDATS-YGADLPGEPSLGYLAKTLLKQVPDIIRLRL 225

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
           ++    +    L+    D    MP+LHL +Q G D ILK M RRH   +  +  + +RS+
Sbjct: 226 SSIDSIEADHHLMDLIADEPRFMPHLHLSLQHGDDMILKRMKRRHLRADAIRFCNEVRSL 285

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
           RPDIA  +D I GFP ET++       L ++ G +    F YSPR GTP   M  Q+D  
Sbjct: 286 RPDIAFGADMIAGFPTETEEMLENAATLAEECGISSLHVFPYSPREGTPAVRMP-QLDRA 344

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445
           +  ER   L+ +    + +     VG +  VL+E  G         +     V   + + 
Sbjct: 345 LVKERAGRLRARGEALKQAHLQNMVGSVQTVLVENSG------FAHTDNFTLV--AAPDL 396

Query: 446 NIGDIIKVRITDVKISTL 463
               + +V IT      L
Sbjct: 397 APRTLAQVAITGHNGKHL 414


>gi|19704549|ref|NP_604111.1| Fe-S oxidoreductase [Fusobacterium nucleatum subsp. nucleatum ATCC
           25586]
 gi|19714835|gb|AAL95410.1| Fe-S oxidoreductase [Fusobacterium nucleatum subsp. nucleatum ATCC
           25586]
          Length = 435

 Score =  321 bits (822), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 120/445 (26%), Positives = 222/445 (49%), Gaps = 20/445 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++    + GC++N Y++  +++    +GYE V   D +D+ ++N+C +   A  K  + L
Sbjct: 5   KKVAFHTLGCKVNQYETESIKNQLIKRGYEEVPFEDKSDIYIINSCTVTSIADRKTRNML 64

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R +       K      V+V GC AQ    EIL     V+ V+  +    +   +    
Sbjct: 65  RRAK-------KINPKAKVIVTGCYAQTNSREIL-EIEDVDFVIDNKNKSNIVNFVGAIE 116

Query: 145 --FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
               +R  + +   E +++           +    A++ IQ+GC+ FC++C +P+ RG  
Sbjct: 117 DISFEREKNGNIFQEKEYQEYEFATL----REMTRAYVKIQDGCNHFCSYCKIPFARGKS 172

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR    ++ E  KL+++G  EI L+G +++A  G+  + EK  F  LL  +  IK L R
Sbjct: 173 RSRKKENILKEIEKLVEDGFKEIILIGIDLSA-YGEDFE-EKDNFESLLEDILRIKDLKR 230

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R  + +P  ++D  I+   +   LMP+LH+ +QS  D +LK+M R + +   ++ + ++
Sbjct: 231 VRIGSVYPDKITDRFIELFKN-KKLMPHLHISLQSCDDTVLKNMRRNYGSSLIKKSLLKL 289

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           +S   D+  ++D IVGFP E +  F+ T D++ +I ++    F+YS R GT  SNM  ++
Sbjct: 290 KSKVKDMEFTADVIVGFPKEDEIMFQNTYDVIKEIEFSGLHIFQYSDREGTIASNMDGKI 349

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL-N 441
           D   K +R   L    +E  V      + + +EVL+E+  ++ G+  G S     V   +
Sbjct: 350 DVKTKKQRADRLDSLKQEMIVDSRKKYLEKSLEVLVEE--EKNGEYFGYSQNYLRVKFRS 407

Query: 442 SKNHNIGDIIKVRITDVKISTLYGE 466
            K   + ++I V++  V+   L  E
Sbjct: 408 DKKDLVNNLINVKVKCVENDILIAE 432


>gi|254391833|ref|ZP_05007028.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC
           27064]
 gi|294815471|ref|ZP_06774114.1| MiaB-like tRNA modifying enzyme YliG [Streptomyces clavuligerus
           ATCC 27064]
 gi|197705515|gb|EDY51327.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC
           27064]
 gi|294328070|gb|EFG09713.1| MiaB-like tRNA modifying enzyme YliG [Streptomyces clavuligerus
           ATCC 27064]
          Length = 499

 Score =  321 bits (822), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 124/484 (25%), Positives = 195/484 (40%), Gaps = 49/484 (10%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +   + + GC  N  DS  +     + G++ V    DAD+ V+NTC   E A +     L
Sbjct: 5   RTVALVTLGCARNEVDSEELAGRLAADGWQLVEDAADADVAVVNTCGFVEAAKKDSVDAL 64

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
               +LK+     G    VV  GC+A+  G+E+    P  + V+G   Y  + + L+   
Sbjct: 65  LEANDLKD----HGRTQAVVAVGCMAERYGKELAEALPEADGVLGFDDYADISDRLQTIL 120

Query: 145 FG------------------------------------KRVVDTDYSVEDKFERLSIVDG 168
            G                                          D       E       
Sbjct: 121 SGGIHASHTPRDRRKLLPLSPAERQSATGVALPGHGDAAPAPIVDLPEGVAPESGPRAPL 180

Query: 169 GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLL 228
                    A + +  GCD+ C+FC +P  RG  ISR  S V+ E R L + GV E+ L+
Sbjct: 181 RRRLGSSPVASVKLASGCDRRCSFCAIPSFRGSFISRRPSDVLGETRWLAEQGVKEVMLV 240

Query: 229 GQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLM 288
            +N N   GK L G+      LL  L+ + G+ R+R +   P +M   LI        + 
Sbjct: 241 SEN-NTSYGKDL-GDIRLLETLLPELAAVDGIERVRVSYLQPAEMRPGLIDVLTSTPKIA 298

Query: 289 PYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFR 348
           PY  L  Q  +  +L+SM R      + ++++ IRS  P   + S+FIVGFPGE++ DF 
Sbjct: 299 PYFDLSFQHSAPDVLRSMRRFGDTERFLELLETIRSKAPQAGVRSNFIVGFPGESEADFA 358

Query: 349 ATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDA 408
                +          F YS   GT  +    ++DE+V AERL  L +   E      + 
Sbjct: 359 ELERFLTHARLDAIGVFGYSDEDGTEAAGYGNKLDEDVVAERLAHLSRLAEELTAQRAEE 418

Query: 409 CVGQIIEVLIEKHGKEKGKLVGR----SPWLQS-VVLNSKNHNI-GDIIKVRITDVKIST 462
            VG+ +EVL+E    E G  VGR    +P     ++  +    + G ++  +    +   
Sbjct: 419 RVGETLEVLVESVDAEDG-AVGRAAHQAPETDGQILFTASEGLVPGRMVVAKAVGAEGVD 477

Query: 463 LYGE 466
           L  +
Sbjct: 478 LLAD 481


>gi|42528109|ref|NP_973207.1| putative tRNA modifying protein [Treponema denticola ATCC 35405]
 gi|81570119|sp|Q73JG6|RIMO_TREDE RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|41819154|gb|AAS13126.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Treponema
           denticola ATCC 35405]
          Length = 467

 Score =  321 bits (822), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 119/471 (25%), Positives = 205/471 (43%), Gaps = 43/471 (9%)

Query: 33  GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92
           GC  N  D+  +  +  +  ++  +  D+ADLI++N+C     A E+  + + + +    
Sbjct: 5   GCAKNQVDAELIIGIMENLSWKNTSDPDEADLIIVNSCGFINSAKEESINAVLQAKAAH- 63

Query: 93  SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDT 152
                     V++AGC+A+   + +    P  + + G      LP+L++ + F K+  D 
Sbjct: 64  ------PKAKVLLAGCLAERYADILKNDLPEADGIFGNGNLSLLPQLID-SMFPKKTSDE 116

Query: 153 DYSVEDKFERLSIVDGGYNRK---RGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209
            +  +        + GG   K      + ++ I EGCD FC+FC +P  RG   SR +  
Sbjct: 117 KFIEKTLVPPQIGICGGERPKILNFPRSTYIKITEGCDNFCSFCAIPIIRGRLRSRPIKD 176

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG--------EKCTFSDLLYSLSEIKGLV 261
           + DE +  +     E  L+GQ++ A++    D              + LL S+S+IKG  
Sbjct: 177 ICDEIKTFLKKSFYEFNLIGQDLAAYQTGKDDLSEDELHRENCSGLALLLKSISKIKGNF 236

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           ++R    HP      ++         +PY  +P QSG+ +I+++MNR   A  Y  II  
Sbjct: 237 KIRLLYIHPDHFPLDILPIMTADKRFLPYFDIPFQSGAQKIIRAMNRNGAAEVYLDIIKN 296

Query: 322 IRSVRP-------DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
           IR           +  I + F+VGFPGETD+DF  T+  + ++    +  F YS    TP
Sbjct: 297 IREAFEKTNSPYGEPQIRTTFLVGFPGETDEDFNETIKFLKELRPLWSGGFTYSREEDTP 356

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK--HGKEKGKL-VGR 431
             +   +V +     RL  +Q           D+ +G+ IEVL+E+    ++K  L +GR
Sbjct: 357 SYSFKGKVPKKTAEARLAEIQNAQTSITEKKLDSFIGKEIEVLVEELIQAEDKTFLALGR 416

Query: 432 ----SPWLQSVVL----------NSKNHNIGDIIKVRITDVKISTLYGELV 468
               +P +   V+          +      G I+K RI       L    V
Sbjct: 417 AWFQAPEVDGAVVLNFNLNKKDIDGNPIAPGSIVKARIAARNGFDLEAVAV 467


>gi|254717992|ref|ZP_05179803.1| elongator protein 3 [Brucella sp. 83/13]
 gi|265982938|ref|ZP_06095673.1| conserved hypothetical protein [Brucella sp. 83/13]
 gi|306839771|ref|ZP_07472572.1| MiaB-like tRNA modifying enzyme [Brucella sp. NF 2653]
 gi|264661530|gb|EEZ31791.1| conserved hypothetical protein [Brucella sp. 83/13]
 gi|306405126|gb|EFM61404.1| MiaB-like tRNA modifying enzyme [Brucella sp. NF 2653]
          Length = 427

 Score =  321 bits (822), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 127/441 (28%), Positives = 204/441 (46%), Gaps = 29/441 (6%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
             + ++GC++N Y+S  M+    + G   +        I+ NTC +  +A  +    + +
Sbjct: 3   VEIITFGCRLNTYESEVMKREADAAGLGTLKDG----AIIFNTCAVTAEAVRQARQAIRK 58

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
            R       +E  D  ++V GC AQ E +        V++V+G +   +         FG
Sbjct: 59  AR-------RENPDARIIVTGCAAQTEADNFAA-MGEVDLVLGNEEKLKSNSYRMLPDFG 110

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRG-VTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
               +    V D  E         +   G   AF+ +Q GCD  CTFC++PY RG   S 
Sbjct: 111 VNQFEKVR-VNDIMEVRETASHMVDAIEGRARAFVQVQNGCDHRCTFCIIPYGRGNSRSV 169

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            +  VVD+ ++L+ NG  E+ L G ++ +  G  L G       +   L+++  L RLR 
Sbjct: 170 PMGAVVDQVKRLVGNGYAEVVLTGVDMTS-YGPDLPGNLRLGKLVKTVLAQVPDLQRLRL 228

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
           ++    +  D L++A      LMP+LHL +Q+G D ILK M RRH   +  +    +R++
Sbjct: 229 SSIDSIEADDDLMEAIASEKRLMPHLHLSLQAGDDMILKRMKRRHLRDDSIRFCQTVRAL 288

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
           RPDI   +D I GFP ET++ F+ ++ +V++ G      F YSPR GTP + M  QV   
Sbjct: 289 RPDIVFGADIIAGFPTETEEMFQNSLKIVEECGLTHLHVFPYSPREGTPAARMP-QVRRE 347

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445
           +  ER   L+ +         +A  G    +L+EK G      V R+       ++  N 
Sbjct: 348 IVKERAARLRAEGDRAYEKHLNALYGTRQRLLVEKEG------VARTEGFTLAAVDQGNA 401

Query: 446 NIGDIIKVRITDVKISTLYGE 466
             G+II+ RI  V      GE
Sbjct: 402 --GEIIE-RI--VTGHD--GE 415


>gi|124027960|ref|YP_001013280.1| hypothetical protein Hbut_1092 [Hyperthermus butylicus DSM 5456]
 gi|123978654|gb|ABM80935.1| conserved archaeal protein [Hyperthermus butylicus DSM 5456]
          Length = 441

 Score =  321 bits (822), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 120/445 (26%), Positives = 211/445 (47%), Gaps = 19/445 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R ++++YGC +N+ D+  M  +  S+GY   N +D+AD+I++NTC +R     ++   + 
Sbjct: 5   RVYIETYGCALNMADTAIMRSVLSSRGYSFTNCVDEADVIIINTCTVRLDTEARMKRRIA 64

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +  +            +VVAGC+A A+   + R +P   V+V     + +   +ER   
Sbjct: 65  ELAAIAEKT-----GARLVVAGCMASAQPYTVKRIAPKA-VLVSTYNVHLVDIAVERG-- 116

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
               +D      +K + L          RG  A + I EGC   C+FC+    R    SR
Sbjct: 117 ----LDLLTPPREKPKPL-FKPTPRLMLRGKIAEVPIAEGCLGDCSFCITKIARRRVYSR 171

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            +  +V   R+L+  G  EI L GQ++ A  G  L G++    +L+  + E++G   +R 
Sbjct: 172 PVENIVKLVRELVRLGAVEIRLTGQDI-AVYGIDLYGKR-LLPELVRRVIEVEGDFMVRI 229

Query: 266 TTSHPRDMSDCLIKAHG--DLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
               P  +   L +         +  ++HLPVQSG DR+L+ M R +T  EYR I+  IR
Sbjct: 230 GMMSPDQLEPILDEFLEVFRHPKVFKFVHLPVQSGDDRVLRIMKRNYTVDEYRAIVREIR 289

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           +  P + I++D IVG PGE ++ F  T+ L++++ + +    +Y+PR  T  + +  QV 
Sbjct: 290 NKVPGVMIATDIIVGHPGEDEEAFENTVRLIEELRFERVHLAQYTPRQRTVAAGLP-QVP 348

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
           + VK +R   L + +    +  +   +G     L+   G+  G L  +      V+L   
Sbjct: 349 DPVKKKRSKRLTEVVMRIGLEEHRRYIGSRACALVVSRGERGG-LDAKLYNYMPVILPEG 407

Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468
           +   G+   + + D     L G +V
Sbjct: 408 SARPGEWRCIEVVDATWYDLRGRVV 432


>gi|319780719|ref|YP_004140195.1| MiaB-like tRNA modifying enzyme [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317166607|gb|ADV10145.1| MiaB-like tRNA modifying enzyme [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 437

 Score =  320 bits (821), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 125/441 (28%), Positives = 200/441 (45%), Gaps = 32/441 (7%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V ++GC++N Y+S  M     S G   +        ++ NTC +  +A  +    + + R
Sbjct: 15  VVTFGCRLNTYESQVMRREAESAGLGALEGG----AVIFNTCAVTGEAVRQAKQAIRKAR 70

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG-- 146
                  ++     ++V GC AQ E E+       V++V+G +             FG  
Sbjct: 71  -------RDNPRARIIVTGCAAQTEPEKFAA-MDEVDLVLGNEEKLNANSYRALPDFGVN 122

Query: 147 ---KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
              K  V+  +SV +    +  VD    R R   AF+ +Q GCD  CTFC++PY RG   
Sbjct: 123 DTEKARVNDIFSVRETAGHM--VDAIEGRAR---AFVQVQNGCDHRCTFCIIPYGRGNSR 177

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           S  +  VV++ ++L  NG  EI L G ++ ++ G  L G       +   L ++  + RL
Sbjct: 178 SVPMGAVVEQVKRLAGNGYAEIVLTGVDMTSF-GADLPGAPKLGKLVKTILKQVPDVKRL 236

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R ++    +  D L+ A      LMP+LHL +QSG D ILK M RRH   +  +  + +R
Sbjct: 237 RLSSIDSIEADDDLLDAIATEPRLMPHLHLSLQSGDDMILKRMKRRHLRDQSIRFCEDVR 296

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
            +RP I   +D I GFP ETD+ F  +  +V++ G      F +SPR GTP + M  Q+ 
Sbjct: 297 KLRPGIVFGADIIAGFPTETDEMFENSEKIVEECGLTHLHVFPFSPREGTPAARMP-QLR 355

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
             V  +R   L+       V       G    +LIE+ G      +GR+       L + 
Sbjct: 356 REVVKQRAARLRAAGEVAYVRHLSLLTGTRQSILIERDG------LGRTEGFTLAALGTG 409

Query: 444 NHNIGDIIKVRITDVKISTLY 464
               G+I++  I+    + L 
Sbjct: 410 A--PGEIVEADISGHDGTRLI 428


>gi|332829284|gb|EGK01938.1| MiaB-like tRNA modifying enzyme [Dysgonomonas gadei ATCC BAA-286]
          Length = 436

 Score =  320 bits (821), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 117/438 (26%), Positives = 203/438 (46%), Gaps = 25/438 (5%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++    + GC++N  ++  +       G  R    + A++ V+NTC + E A +K    +
Sbjct: 10  KKAAYLTLGCKLNFAETSAIGKQLSQVGVRRAREGEVAEICVINTCSVTEFADKKCRQAV 69

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            ++       IKE     V+V GC AQ + E+I      V++V+G +    +   L+  +
Sbjct: 70  RKL-------IKENPGAYVIVTGCYAQLKPEDIAG-IEGVDIVLGSEQKLDVVAYLDELK 121

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
              + V    S  +K +         +R R    FL +Q+GCD FC+FC +P+ RG   +
Sbjct: 122 KKDKGV-VHTSKTNKIKSFVPSCSQDDRTR---YFLKVQDGCDYFCSFCTIPFARGRSRN 177

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
            ++  +V +A+++   G  EI L G N+    G        TF DL+ +L E+ G+ R R
Sbjct: 178 GTIESMVKQAQEVAAKGGKEIVLTGVNI----GDFGRTTGETFFDLIKALDEVDGIERYR 233

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
            ++  P  ++D +I          P+ H+P+QSGSD +LK M RR+    +R  +++I++
Sbjct: 234 ISSIEPNLLTDEIIDFVSKSKRFAPHFHIPLQSGSDAVLKLMRRRYDTSLFRHKVEKIKA 293

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           + PD  I  D IVG  GETD+ F  T   ++ + ++Q   F YS R  T    +  +VD 
Sbjct: 294 IMPDAFIGVDVIVGTRGETDEYFEETKQFLEGLDFSQLHVFTYSERPNTQALKIEHEVDP 353

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
             K  R   L      +  +F  +  G   +VL E H +   ++ G +     +    + 
Sbjct: 354 KTKHARCKVLLDLSDNKLEAFYRSQQGTQRKVLFE-HAQHDDRMYGFTENYVKIETPYQA 412

Query: 445 HN--------IGDIIKVR 454
                     +GD  KV+
Sbjct: 413 SKANEIKIVTLGDFNKVK 430


>gi|158425333|ref|YP_001526625.1| MiaB-like tRNA modifying enzyme [Azorhizobium caulinodans ORS 571]
 gi|158332222|dbj|BAF89707.1| MiaB-like tRNA modifying enzyme [Azorhizobium caulinodans ORS 571]
          Length = 429

 Score =  320 bits (821), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 131/447 (29%), Positives = 211/447 (47%), Gaps = 38/447 (8%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
             V ++GC++N  D   ++    + G  R         +++N+C +  +A  +    + R
Sbjct: 12  VEVVTFGCRLNTLDGAEIQRAATAAGLTRT--------VIVNSCAVTAEAVRQARQSIRR 63

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER---- 142
           ++       +    L VVV GC AQ E +      P V+ VVG      +    E     
Sbjct: 64  LK-------RADPALKVVVTGCAAQTEPQTFAT-MPEVDRVVGNGAKGAVETWAEARAAF 115

Query: 143 ----ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
               +   K  VD  ++V +    L +VDG   R R   AF+ +Q GCD  CTFC++PY 
Sbjct: 116 DFGVSAEEKVKVDDIFAVRET--ALHMVDGMDGRTR---AFVQVQNGCDHRCTFCIIPYG 170

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258
           RG   S  +  VV   R L + G  E+ L G ++ +  G  L G       +   L ++ 
Sbjct: 171 RGASRSVPMGDVVAHIRALAEGGQKEVVLTGVDLTS-YGADLPGAPTLGRLVRAILRQVP 229

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
            L RLR ++    +    L++A  + + LMP+LHL +QSG D ILK M RRH+  +   +
Sbjct: 230 ELERLRLSSIDSVEADADLLRALAEEERLMPHLHLSLQSGDDMILKRMKRRHSRAQVIAL 289

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           ++ +R +RPD+ + +D I GFP ET+  FR ++ +VD  G +    F +S R GTP + M
Sbjct: 290 VEEMRRLRPDLVLGADLIAGFPTETEAMFRNSLSIVDACGLSFLHVFPFSARAGTPAARM 349

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSV 438
              V  +V   R   L++K  E       A +G+   VL+E+ G      +GR+P+   V
Sbjct: 350 PP-VPGDVVDARARRLREKGEEALRRHLAAEIGRRHPVLVERGG------IGRTPYFTPV 402

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYG 465
            L+ +    G +I +RI     + L  
Sbjct: 403 RLH-RAAQPGAVIDLRIAGHDGARLVA 428


>gi|148642905|ref|YP_001273418.1| 2-methylthioadenine synthetase, MiaB [Methanobrevibacter smithii
           ATCC 35061]
 gi|222445138|ref|ZP_03607653.1| hypothetical protein METSMIALI_00759 [Methanobrevibacter smithii
           DSM 2375]
 gi|148551922|gb|ABQ87050.1| 2-methylthioadenine synthetase, MiaB [Methanobrevibacter smithii
           ATCC 35061]
 gi|222434703|gb|EEE41868.1| hypothetical protein METSMIALI_00759 [Methanobrevibacter smithii
           DSM 2375]
          Length = 426

 Score =  320 bits (820), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 125/446 (28%), Positives = 225/446 (50%), Gaps = 26/446 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + ++ +YGC  N  D+  M  +      + V+S + AD+I++NTC+++     KV   + 
Sbjct: 2   KVYIDTYGCTFNKADAQIMGGVLKENHIDLVDSPELADVIIVNTCYVKLPTENKVVYKIQ 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           +++           D  V+V+GC+ + + E++ + +P  +  +GP    +  +++     
Sbjct: 62  QLQEK-------FPDKKVIVSGCMVEIDPEKLEKVAPDCS-WIGPHQLNKTADVVNGTYC 113

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G+ + +  +S + K     + DG       +   + I EGC   CTFC   + RG   S 
Sbjct: 114 GRVIRECGFSKDSKVGVPKVSDG------SLIHIIQIAEGCLGACTFCCTRFARGPLNSY 167

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            +  +V EA+K ID+G  EI L  Q+  A+      GEK   SDL+  ++ + G  R+R 
Sbjct: 168 PIKDIVAEAKKAIDDGAVEIQLTAQDTAAFGYDS--GEK--LSDLIKEVANLDGEFRVRV 223

Query: 266 TTSHPRDM---SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
              HP+++    D +I A      +  ++HLPVQ+GS+++L  M R HT  +Y  I+ + 
Sbjct: 224 GMMHPKNILNNVDEIIDAI-KHPKVYNFIHLPVQTGSNKVLSEMRRGHTLDQYLDIVSKF 282

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           +S  PD+ ++ D IVG+P E+D+DF+ T+DL+  I  +     KY  R G   S++ E +
Sbjct: 283 KSEIPDLTLAVDIIVGYPTESDEDFQLTVDLLRNIKPSLIHLSKYQHRKGAVSSSLKE-I 341

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
              V  +R   L +   E     N   VG +   ++ + G + G  + ++     V+++ 
Sbjct: 342 PHEVMKKRSRNLSRIKTEITEEENKELVGSVQNAVVVEVGSKGG-FIAKTDSYIPVIVDG 400

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
              N+GD IKV+ITD   + L G++V
Sbjct: 401 --VNLGDFIKVKITDATATYLKGDVV 424


>gi|326330088|ref|ZP_08196400.1| 2-methylthioadenine synthetase [Nocardioidaceae bacterium Broad-1]
 gi|325952098|gb|EGD44126.1| 2-methylthioadenine synthetase [Nocardioidaceae bacterium Broad-1]
          Length = 493

 Score =  320 bits (820), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 124/488 (25%), Positives = 207/488 (42%), Gaps = 44/488 (9%)

Query: 12  HMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCH 71
               Q  DQ +V     + + GC  N  DS  +     + G+  V   D+AD +V+NTC 
Sbjct: 16  QQADQKADQKVVS--VAMVTLGCTRNEVDSEELAGRLTAGGFRLVADPDEADTVVVNTCG 73

Query: 72  IREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ 131
             E+A +     L    +LK      G    VV  GC+A+  G+++    P  + V+G  
Sbjct: 74  FVEQAKKDSVDTLLEAADLKE----TGKAQAVVAVGCMAERYGKDLAAELPEADAVLGFD 129

Query: 132 TYYRLPELLERARFGKRVVDTDYSVEDKFERLSI--------------------VDGGYN 171
            Y  +   L     G+      ++ +D+   L I                    V G   
Sbjct: 130 DYPDIAAKLRSILSGE--THHPHTPQDRRLLLPISPVERDASAISVPGMAAVDQVPGFAG 187

Query: 172 RKR---GVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLL 228
           R R      A L +  GCD+ CTFC +P  RG  +SR  S V+ EA+ L + GV E+ L+
Sbjct: 188 RTRLDDAPWAPLKLASGCDRRCTFCAIPQFRGSFVSRRPSDVLHEAQWLAEQGVKELFLV 247

Query: 229 GQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLM 288
            +N  +  GK L G+      LL  L+ I G+ R+R +   P +    L+K       + 
Sbjct: 248 SENSTS-YGKDL-GDIRLLETLLPELAGIDGIERVRVSYLQPAETRPDLLKVIATTPGVT 305

Query: 289 PYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFR 348
           PY  L  Q  S+ +L+ M R      +  ++++IR   P+  + S+ IVGFPGET++D  
Sbjct: 306 PYFDLSFQHASNAVLRRMKRFGDPESFLGLLEQIRGYAPEAGVRSNVIVGFPGETEEDLE 365

Query: 349 ATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE--QVDENVKAERLLCLQKKLREQQVSFN 406
              D +          F YS   GT  +      ++DE+    R+  + + + E  V   
Sbjct: 366 ILTDFLVAARMDVTGVFGYSDEEGTEAAGFDASLKLDEDEIRARVEHVNELVEELTVQRA 425

Query: 407 DACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVL---NSKNHNIGDIIKVRITDVK 459
           +  +G+ + VL+E+     G++ GR+    P +  +     +      GD++   +   +
Sbjct: 426 EERIGEQVVVLVEETS--DGEIWGRAAHQGPEVDGMTALEGDVDGVRPGDLVTATVIASE 483

Query: 460 ISTLYGEL 467
              L   +
Sbjct: 484 GVDLVASV 491


>gi|291301726|ref|YP_003513004.1| MiaB-like tRNA modifying enzyme YliG [Stackebrandtia nassauensis
           DSM 44728]
 gi|290570946|gb|ADD43911.1| MiaB-like tRNA modifying enzyme YliG [Stackebrandtia nassauensis
           DSM 44728]
          Length = 479

 Score =  320 bits (820), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 113/484 (23%), Positives = 199/484 (41%), Gaps = 45/484 (9%)

Query: 17  IVDQCIVP--QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIRE 74
           + +   VP  +R  V + GC  N  DS  +     + G+E  +   DAD++++NTC   E
Sbjct: 1   MSETPPVPSSRRVAVVTLGCARNDVDSEELAARLANGGWEVTDDGSDADVVMVNTCGFIE 60

Query: 75  KAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYY 134
            A +     L    +             VV  GC+A+  G ++    P  + V+G   Y 
Sbjct: 61  TAKQDSIDMLLEASD---------TGAKVVATGCLAERYGTQLADSLPEADAVLGFDHYP 111

Query: 135 RLPELLERARFGKRV------------------------VDTDYSVEDKFERLSIVDGGY 170
            +   L+    G+++                        V   ++  D  +         
Sbjct: 112 DIAARLDAIARGEKIASHTPTDRRTLLPISPVKRREATAVIPGHAAPDTDDTAMPAHLKV 171

Query: 171 NRKR---GVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITL 227
            R+R   G  A L I  GCD+ C FC +P  RG  +SR   +++ EA+ L + GV E+TL
Sbjct: 172 MRRRLTSGPVANLKIASGCDRRCAFCAIPSFRGAFVSRDPGEILAEAQWLAEQGVVEVTL 231

Query: 228 LGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL 287
           + +N  +  GK L  +      LL  L+ + G+ R+R +   P ++   L++       +
Sbjct: 232 VSENTTS-YGKDLS-DAAALEKLLPQLAAVDGIERVRVSYLQPAELRPSLVETIATTPGV 289

Query: 288 MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDF 347
            PY  L  Q  S  +L+ M R  +   + ++++ IR + P   + ++ IVGFPGETD D 
Sbjct: 290 APYFDLSFQHSSRDLLRRMRRFGSTEGFLELLETIRGLSPLAGVRTNVIVGFPGETDADA 349

Query: 348 RATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFND 407
                 + +        F YS   GT  +++   VDE+V  +R   +     E       
Sbjct: 350 AELERFLSQARLDAVGVFSYSDEDGTEAADLDGHVDEDVIVKRHDHISVLAEEVTAQRAA 409

Query: 408 ACVGQIIEVLIEKHGKE--KGKLVGRSPWLQS---VVLNSKNHNIGDIIKVRITDVKIST 462
             +G+ + V+++        G+   ++P +     ++        GDI+   + D     
Sbjct: 410 ERIGETVSVVVDSADDSGVDGRAAHQAPEVDGSTALIGEVDGLRPGDIVSATVVDSIGVD 469

Query: 463 LYGE 466
           L  E
Sbjct: 470 LVAE 473


>gi|307297694|ref|ZP_07577500.1| MiaB-like tRNA modifying enzyme YliG [Thermotogales bacterium
           mesG1.Ag.4.2]
 gi|306916954|gb|EFN47336.1| MiaB-like tRNA modifying enzyme YliG [Thermotogales bacterium
           mesG1.Ag.4.2]
          Length = 434

 Score =  320 bits (820), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 124/452 (27%), Positives = 204/452 (45%), Gaps = 32/452 (7%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +  V S GC  N+ D      +  ++G+E V     ADLI+++TC   + A ++    + 
Sbjct: 2   KLGVLSLGCSKNIADMDNFMGIMANRGHEIVEDASVADLIIIDTCGFIDDAKKESVEEIF 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           +  +LK         L VV  GC+ Q   +E+      ++ ++G  + + L +L+E    
Sbjct: 62  KFISLKQE----NPGLKVVAVGCLVQRYFDELKSEISEIDGLIGVTSPFTLADLIENGE- 116

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGV-----TAFLTIQEGCDKFCTFCVVPYTRG 200
                         F  L   DG Y+    V     +A++ I +GC++ C FC +P  +G
Sbjct: 117 --------------FFYLKEPDGVYDFSSRVVSSKYSAYVKIGDGCNRNCAFCSIPNFKG 162

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
             +SR+   +V E   LI  GV EI L+ Q+     GK L+ EK     LL  L+ I G 
Sbjct: 163 KSVSRNPDSIVKETLSLIRKGVKEIDLVSQDCT-QYGKDLN-EKTDLKSLLERLNNIDGD 220

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
             +R    HP  + + L+ +   L  ++ Y  +PVQSGS RILK M R   +   R+++ 
Sbjct: 221 FWIRVLYLHPDHVDNELVDSILSLSKVVDYFDIPVQSGSTRILKKMGRIKDSDRLRELLF 280

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
            IR   P   + +  ++GFPGE++  F  T+D V  + + +   F YS   GT       
Sbjct: 281 GIRQKAPHAILRTTLLIGFPGESEATFNETLDFVRSVKFDRLGGFVYSNEEGTQAFGQKR 340

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQ 436
            +      E L  L ++             GQI+ VL+E+ G      +GR    +P + 
Sbjct: 341 TIGRKAAKEMLNSLLEEQDTISAGRLSQFKGQIMTVLVEESG--SSYSLGRAYNSAPDVD 398

Query: 437 SVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            VV+   ++  G  +K RITD     + G ++
Sbjct: 399 GVVVLKGHNEDGVFVKARITDSYEHDMEGVIL 430


>gi|167648821|ref|YP_001686484.1| MiaB-like tRNA modifying enzyme [Caulobacter sp. K31]
 gi|167351251|gb|ABZ73986.1| MiaB-like tRNA modifying enzyme [Caulobacter sp. K31]
          Length = 449

 Score =  320 bits (820), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 128/473 (27%), Positives = 206/473 (43%), Gaps = 41/473 (8%)

Query: 7   LIGVAHMVSQIVDQCIVPQR-------FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSM 59
           LI         + +   P           V ++GC++N Y+S  +     + G       
Sbjct: 6   LISRPPTPKPAIGEEGGPATTMSGPDGVDVVTFGCRLNAYESEAIRARASADGL------ 59

Query: 60  DDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILR 119
             AD +V NTC +  +A  +    + + R       +E  D  ++V GC AQ +      
Sbjct: 60  --ADAVVFNTCAVTNEAVRQARQAIRKAR-------RERPDARLIVTGCAAQIDPAAFAA 110

Query: 120 RSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAF 179
             P +++V+G         LL+ +   +  V+   S+++    L         K    A+
Sbjct: 111 -MPEIDLVLGNAEKAAPGALLDTSTRVR--VNDIMSIKETAGHL-----IAGLKDRARAY 162

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
           + +Q GCD  CTFC++P+ RG   S    +VV++ R+L   G  E+ L G +V +W G  
Sbjct: 163 VEVQNGCDHRCTFCIIPFGRGNSRSAPAGEVVEQVRRLSAEGYNEVVLTGVDVTSW-GTD 221

Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
           L G+      +   L  +  L RLR ++    ++   L+K       LMPYLHL +Q+G 
Sbjct: 222 LPGQPTLGQLVGRILKLVPDLPRLRLSSIDAAEIDPDLLKLLETELRLMPYLHLSLQAGD 281

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
           D ILK M RRH   +  +++  +R VRPD A  +D I GFP E++  F  T+ LV++ G 
Sbjct: 282 DMILKRMKRRHNRADALKLVAEVRRVRPDTAFGADLIAGFPTESEGAFENTLKLVEEAGL 341

Query: 360 AQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419
           A    F YS R GTP + M   V   V  +R   L++  +          VG+ +  L+E
Sbjct: 342 AFLHVFPYSARPGTPAARMPP-VKGGVIKDRARRLREAGQAGLERHLQRQVGRTLSGLVE 400

Query: 420 KHGKEKGKLVGRSPWLQSVVLN---SKNHNIGDIIKVRITDVKISTLYGELVV 469
           + G      V R+     +  +         G I   R+T    S +  EL  
Sbjct: 401 REG------VARAEDFTEIAFDPALGGAAPQGQIAAFRVTGHDGSRVIAELAA 447


>gi|307825688|ref|ZP_07655905.1| MiaB-like tRNA modifying enzyme [Methylobacter tundripaludum SV96]
 gi|307733265|gb|EFO04125.1| MiaB-like tRNA modifying enzyme [Methylobacter tundripaludum SV96]
          Length = 429

 Score =  320 bits (820), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 124/448 (27%), Positives = 214/448 (47%), Gaps = 28/448 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +  +K+ GC++N  +       F   G++     + A LIV+N+C + + AA K    + 
Sbjct: 2   KVHLKTLGCRLNEAELETWAQAFQKSGHQITKQAEAAHLIVINSCAVTQDAARKSRQLIR 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           RI        ++     +VV+GC A    +E       V+++V  +      +L+E+   
Sbjct: 62  RIH-------RDNPQAKLVVSGCYATLNEDEAASLL-GVDLIVSNKDKD---QLVEKTLA 110

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
               ++ D       E   I      R+R   AF+ +Q+GC   CTFC+V   RG E SR
Sbjct: 111 E---LNMDSMPVLSTEPGEISLFTRGRQR---AFVKVQDGCRYRCTFCIVTVARGEENSR 164

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            +  V+DE   L   G+ E+ L G ++    G  L       SDL+ ++     + RLR 
Sbjct: 165 PVQAVIDEINALHRQGITEVILTGVHLGG-YGSDL---GNNLSDLIKAILAETDIPRLRL 220

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
            +  P ++     K   D   LMP+LHLP+QSGSD +L+ M RR    E+  I++++R+ 
Sbjct: 221 GSLEPWELPGDFFKLF-DNPRLMPHLHLPLQSGSDTVLRRMARRCKTEEFASIVNQLRAQ 279

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P+  +++D IVGFPGET+ +++ + + + + G+     F YS R GT  +++  Q+  +
Sbjct: 280 IPNFNVTTDIIVGFPGETEQEWQESFNFIKQTGFGHIHIFTYSSREGTKAASLPGQLSND 339

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK----EKGKLVGRSPWLQSV--V 439
           +K +R   L +   E ++ F    VG    VL E + +    +K ++ G +P    V  V
Sbjct: 340 IKKQRSRQLHELAEEMKLKFFADNVGNQFPVLWEGYSEALADDKQRVFGYTPNYLRVGCV 399

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGEL 467
           + S        I   +T V+   + GE+
Sbjct: 400 IGSDVSVENRTISCMVTAVEEGYVVGEI 427


>gi|152965452|ref|YP_001361236.1| MiaB-like tRNA modifying enzyme YliG [Kineococcus radiotolerans
           SRS30216]
 gi|238066341|sp|A6W833|RIMO_KINRD RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|151359969|gb|ABS02972.1| MiaB-like tRNA modifying enzyme YliG [Kineococcus radiotolerans
           SRS30216]
          Length = 486

 Score =  320 bits (820), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 122/489 (24%), Positives = 212/489 (43%), Gaps = 43/489 (8%)

Query: 17  IVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA 76
           +       +   + + GC  N  DS  +       G+  V+  D AD+ V+NTC   E+A
Sbjct: 1   MPPTSGTSRSVALVTLGCARNDVDSEELAGRLADAGWTLVDDADGADVAVVNTCGFVEQA 60

Query: 77  AEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL 136
            +     +    +LK +    G    VV  GC+A+  G+++    P  + ++G  +Y  L
Sbjct: 61  KKDSIDTVLAAADLKEA----GRTKAVVAVGCMAERYGKDLAESLPEADAILGFDSYGDL 116

Query: 137 PELLERARFGKR---------------------VVDTDYSVEDKFERLSIVDGGYNRKR- 174
              LE    G++                           +  D  E L+   G    +R 
Sbjct: 117 SSHLEAILHGEKPQSHVPRDRRTLLPLAPAERQAARPVIAEPDLPEGLAPASGPRVVRRR 176

Query: 175 ---GVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQN 231
              G  A + I  GCD+ CTFC +P  RG  +SR   +V+ E R L + GV E+ L+ +N
Sbjct: 177 LGSGPWAPVKIAAGCDRRCTFCAIPAFRGSFVSRPAEEVLAETRWLAEQGVKEVFLVSEN 236

Query: 232 VNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL 291
             +  GK L G+      LL  ++ ++G+ R+R +   P ++   L+ A      ++PY 
Sbjct: 237 TTS-YGKDL-GDLRALEALLPHVAAVEGIERVRVSYLQPAEVRPGLLDALTSTPGVVPYF 294

Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351
            L  Q  S  +L+ M R      +  +++++R   P   I S+ IVGFPGET+ D     
Sbjct: 295 DLSFQHSSPAVLRRMRRFGGTEPFLALLEQVRERHPQAGIRSNVIVGFPGETEADVDELC 354

Query: 352 DLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVG 411
             +++        F YS   GT    +  ++ + V A R+  + + + E      +  +G
Sbjct: 355 SFLERARLDVVGVFGYSDEDGTEAETLDGKLPDEVVAARVDRVTRLVEELVTQRAEERLG 414

Query: 412 QIIEVLIEKHGKEKG--KLVGRSPWLQSVVLNSKNHN---------IGDIIKVRITDVKI 460
           +++EVL+E    E G   +VGR+   Q   ++ +            +GD++  R+T V  
Sbjct: 415 EVVEVLVESVVDEDGDPHVVGRAAH-QGPDVDGETELDLPAGFVVHVGDLVTARVTGVAG 473

Query: 461 STLYGELVV 469
           + L  E +V
Sbjct: 474 ADLLAEPLV 482


>gi|114705323|ref|ZP_01438231.1| hypothetical protein FP2506_10301 [Fulvimarina pelagi HTCC2506]
 gi|114540108|gb|EAU43228.1| hypothetical protein FP2506_10301 [Fulvimarina pelagi HTCC2506]
          Length = 424

 Score =  320 bits (820), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 125/442 (28%), Positives = 194/442 (43%), Gaps = 32/442 (7%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
             V S+GC++N Y++  M+    + G            IV NTC +  +A  +    + +
Sbjct: 3   VDVVSFGCRLNTYEAEVMKREASAAGLGAGERP----AIVFNTCAVTAEAVRQARQQIRK 58

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
            R       +E  D  +VV GC AQ E          V+ V+G     +         FG
Sbjct: 59  AR-------RENPDARIVVTGCAAQTEPARFAEMI-EVDAVIGNDEKLKAESYAALPDFG 110

Query: 147 -----KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
                K  V+   SV +    +  VD    R R   A + IQ GCD  CTFC++PY RG 
Sbjct: 111 VAAEEKVKVNDIMSVTETAGHM--VDAIEGRAR---AIVQIQNGCDHRCTFCIIPYGRGN 165

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
             S  +  VV++ ++L+ +G  E+ L G ++ +W G  L G       +   L  +  L 
Sbjct: 166 SRSVPMGAVVEQVKRLVASGYNEVVLSGVDMTSW-GADLPGAPKLGKLIQSILKNVPDLP 224

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           RLR ++    +  + LI+A      +MP+LHL +Q+G D ILK M RRH   +       
Sbjct: 225 RLRLSSIDSVEADEALIEAIASDPRVMPHLHLSLQAGDDMILKRMKRRHLRADSIAFCTE 284

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R  RPDI   +D I GFP ET+  F  T+ LV++ G      F +SPR GTP + M  Q
Sbjct: 285 MRRKRPDIVFGADLIAGFPTETEAMFENTLKLVEECGLTFLHVFPFSPREGTPAARMP-Q 343

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           ++++V   R   L+              +G    +L+E+ G      VGR+       + 
Sbjct: 344 LEKSVIKNRAARLRAAGENAFARHLTRQIGTQRSILVEREG------VGRAEDFTLCRV- 396

Query: 442 SKNHNIGDIIKVRITDVKISTL 463
             +   G ++  +I       L
Sbjct: 397 -ADGLPGSLVATKIIGASGGML 417


>gi|119716546|ref|YP_923511.1| MiaB-like tRNA modifying enzyme YliG [Nocardioides sp. JS614]
 gi|238066419|sp|A1SJ39|RIMO_NOCSJ RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|119537207|gb|ABL81824.1| SSU ribosomal protein S12P methylthiotransferase [Nocardioides sp.
           JS614]
          Length = 480

 Score =  320 bits (820), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 121/483 (25%), Positives = 202/483 (41%), Gaps = 35/483 (7%)

Query: 17  IVDQCIVPQR----FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHI 72
             D    P R      + + GC  N  DS  +     + G+  V    +AD +V+NTC  
Sbjct: 2   TTDSSPAPVRELLSVAMVTLGCARNEVDSEELAGRLEADGFRLVQDPAEADTVVVNTCGF 61

Query: 73  REKAAEKVYSFLGRIRNLKNSRIK-EGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ 131
            E A +     L +  +LK    + +G    VV  GC+A+  G+++    P  + V G  
Sbjct: 62  VEAAKKDSVDTLLQAADLKARSEQGQGRTRAVVAVGCLAERYGKDLAASLPEADAVFGFD 121

Query: 132 TYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVD----------------GGYNRKR- 174
            Y  +   L     G+      ++  D+   L I                      R+R 
Sbjct: 122 DYPDIAARLRSIVAGE--AHEAHTPHDRRTLLPITPVERVLSTTPVPGHASGPASVRRRL 179

Query: 175 --GVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNV 232
             G TA L +  GCD+ C+FC +P  RG  +SR  S V+ EAR L D+G  E+ L+ +N 
Sbjct: 180 DDGPTAALKLASGCDRRCSFCAIPAFRGSFLSRRPSDVLQEARWLADHGARELFLVSENS 239

Query: 233 NAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLH 292
            +  GK L G+      LL  L+ + G+ R+R +   P +    LI+A      + PY  
Sbjct: 240 TS-YGKDL-GDLRLLETLLPELAAVDGVERVRVSYLQPAETRAGLIEAIASTPGVAPYFD 297

Query: 293 LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352
           L  Q  S  +L+ M R      +  ++ ++R   P   + S+ IVGFPGET+ D     D
Sbjct: 298 LSFQHASAPVLRRMRRFGDPESFLALLAQVRGHAPAAGVRSNVIVGFPGETEQDLETLCD 357

Query: 353 LVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQ 412
            +          F YS   GT  +    ++D++    R+  +   + E         +G+
Sbjct: 358 FLVAARLDVTGVFGYSDEDGTEAATYDGKLDDDEIRARVEHVSDLVEELTSQRAAERLGE 417

Query: 413 IIEVLIEKHGKEKG--KLVGRS----PWLQS-VVLNSKNHNIGDIIKVRITDVKISTLYG 465
            +EVL+E+     G   + GR+    P +     L   +  +GD+++  +   + + L  
Sbjct: 418 QVEVLVERVEDGPGGRTVEGRAAHQGPEVDGATYLLDSDARVGDLVRAVVVGSEGADLDA 477

Query: 466 ELV 468
             +
Sbjct: 478 RPL 480


>gi|319407864|emb|CBI81517.1| conserved hypothetical protein [Bartonella sp. 1-1C]
          Length = 427

 Score =  319 bits (819), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 116/443 (26%), Positives = 195/443 (44%), Gaps = 24/443 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
              + ++GC++N Y+S  +     S G     +      I+ NTC +  +A  +    + 
Sbjct: 2   TIEIVTFGCRLNSYESEIIRKESTSAGL----NELKGGAIIFNTCAVTAEAVRQAKQAIR 57

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           + +       ++     ++V GC AQ E +        V++++G +         +   F
Sbjct: 58  KAK-------RKNPHARIIVTGCAAQTEAKN-FSLMKEVDLILGNEEKLHAHSYRQLPDF 109

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRG-VTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
           G    D    V D  E   I     N   G   AF+ +Q GCD  CTFC++PY+RG   S
Sbjct: 110 GIN-HDEKLRVNDIMEVHKIAPHMINALEGRTRAFVQVQNGCDHRCTFCIIPYSRGRSRS 168

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
             +  ++++ ++LI NG+ EI L G ++ +  G  L G+      +   L  +  L RLR
Sbjct: 169 VPMGIIIEQIKQLIGNGIQEIVLTGVDLTS-YGPDLPGKITLGKLVSTILHHVPDLPRLR 227

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
            ++    +    LI        +MP+LHL +Q+G + ILK M RRH      Q    +R+
Sbjct: 228 LSSIDSIEADQELINLLAYEKRIMPHLHLSLQAGDNMILKRMKRRHMRENAIQFCQDLRA 287

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
            RP I   +D I GFP ET++ F+ ++ L+ + G      F +SPR GTP + M  Q+  
Sbjct: 288 KRPTIVYGADLIAGFPTETEEMFQNSLALIHECGLTHLHVFPFSPREGTPAARMP-QISR 346

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
            +   R   L+K+  +               +L+E+ G      +GR+       +  K+
Sbjct: 347 EIIKIRAEKLRKEGEKAYQKHLIYLKNSQQTILVERDG------IGRTEDYTLTQI--KD 398

Query: 445 HNIGDIIKVRITDVKISTLYGEL 467
              G I+K  I D   + L   L
Sbjct: 399 VKAGAIVKALIVDHDGNKLIATL 421


>gi|206890255|ref|YP_002248876.1| hypothetical protein THEYE_A1048 [Thermodesulfovibrio yellowstonii
           DSM 11347]
 gi|206742193|gb|ACI21250.1| conserved hypothetical protein [Thermodesulfovibrio yellowstonii
           DSM 11347]
          Length = 407

 Score =  319 bits (819), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 118/437 (27%), Positives = 215/437 (49%), Gaps = 40/437 (9%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    +YGC++N  ++ R+E +  ++GY   ++ ++A L ++NTC +  KA  +    + 
Sbjct: 2   KVCFITYGCRVNQAEAQRLEKLLTTKGYVVTSNPEEASLWIINTCAVTHKAEVQSRHIIN 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           + + L              V GC  +    E      + +                    
Sbjct: 62  KAKKLGKKA---------FVTGCYVELCRIENSENLKVFSNFEK---------------- 96

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                    S+ + FE L+  D     +    A + +Q+GC+++C++C+VPY R    S 
Sbjct: 97  --------DSIINNFENLNKSDTLKISR--HRAIIKVQDGCNQYCSYCIVPYLRRKPRSY 146

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            + Q++ E +     G+ E+ L G N+    G   +  K + + LL ++ +     R+R 
Sbjct: 147 KIEQIMKEIKDYQSIGIKEVVLSGINIG-LYGIDYE-NKISLNKLLKAILKETSGFRIRL 204

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
           ++     +    ++   D   +  +LH+P+Q GSDRIL  MNRR+ A+++ QII++I  +
Sbjct: 205 SSIEINHIDQEFLEIISDN-RICKHLHIPLQHGSDRILGLMNRRYDAFQFSQIIEKIFKL 263

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            PDI+I +D +VGFP ET+DDF+ T+ L++KIG++    F YS R  T  S M EQ+ EN
Sbjct: 264 YPDISIGTDVMVGFPSETEDDFKRTLQLIEKIGFSYLHVFPYSKRPFTKASEMTEQIPEN 323

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445
           +K +R  CL +  + +++ +    +G  +EV+IE   K+ G   G S       +++K  
Sbjct: 324 IKRQRADCLIEVGKRKKLEYIKKFIGSELEVIIE--NKKNGFFSGTSDNYIKCFVDNKKL 381

Query: 446 NIGDIIKVRITDVKIST 462
             G+I KV + ++K   
Sbjct: 382 VAGNIFKVIVNNIKGEY 398


>gi|99034401|ref|ZP_01314414.1| hypothetical protein Wendoof_01000782 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
 gi|225630069|ref|YP_002726860.1| MiaB-like tRNA modifying enzyme [Wolbachia sp. wRi]
 gi|225592050|gb|ACN95069.1| MiaB-like tRNA modifying enzyme [Wolbachia sp. wRi]
          Length = 408

 Score =  319 bits (819), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 126/439 (28%), Positives = 217/439 (49%), Gaps = 36/439 (8%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V ++GC++N Y+S  +++       E        +++V+++C +  +A  +V   + +I 
Sbjct: 4   VITFGCRLNFYESELIKEALKKAKRE--------NVVVVHSCAVTNEAERQVKQKIRKI- 54

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
                  K   +  ++V GC  Q +  E+    P V+ V+G Q   +    L        
Sbjct: 55  ------YKNDPNKEIIVVGCAVQLDP-EVYSSIPGVSKVLGNQDKLKAENYLLN------ 101

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
             D    V D      +++G  ++ R   AF+ IQ GC+  CTFC +   RG   S  ++
Sbjct: 102 --DDKILVSDNQVEPVLINGFEDKSR---AFIEIQNGCNHSCTFCSITEARGNNRSVPIN 156

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
            ++++ R  ++NG  E+   G ++  + G  L G+    S +   L +I  L RLR ++ 
Sbjct: 157 SIIEQIRIFVENGYQEVVFTGVDITDF-GTDLLGKPSLGSMIRRVLKDIPELKRLRLSSI 215

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
              ++ D L+    +   LMP+LHL +QSG++ ILK M RRH   +  +   +++S+RP+
Sbjct: 216 DVAEVDDELMDLIANESRLMPHLHLSLQSGNNLILKRMKRRHNREQVIEFCHKMKSLRPN 275

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           IA  +D I GFP ETD+ F+ T+DL+ K       +F YS R  TP + M  QV ENV+ 
Sbjct: 276 IAFGADIIAGFPTETDEMFQDTVDLLKKTNIVYLHAFPYSERKNTPAARMP-QVPENVRK 334

Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIG 448
           ER+  L++  +E   SF  + +     VL+E++       VGR+     + L SK     
Sbjct: 335 ERVKNLREVNKEIMSSFCQSLINTKQSVLVEQNN------VGRAENFALIKLESKAQAK- 387

Query: 449 DIIKVRITDVKISTLYGEL 467
            I+KV +  V+ + L G +
Sbjct: 388 SIVKVNVKGVENNYLIGNI 406


>gi|291286754|ref|YP_003503570.1| MiaB-like tRNA modifying enzyme [Denitrovibrio acetiphilus DSM
           12809]
 gi|290883914|gb|ADD67614.1| MiaB-like tRNA modifying enzyme [Denitrovibrio acetiphilus DSM
           12809]
          Length = 439

 Score =  319 bits (819), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 127/445 (28%), Positives = 225/445 (50%), Gaps = 28/445 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R F+ ++GC++N  +S ++ + F       V++ ++ADL++ NTC + E+A  K +S + 
Sbjct: 2   RTFIYTFGCKVNQVESEKIVNEFKDYNLTSVDTANEADLLIFNTCAVTERAENKFHSMVR 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           + R           D+++ V GC A+ + +++       ++VV   T     ++LE    
Sbjct: 62  KARGA-------NPDVIIAVTGCAAEKDKDKLKAL--GADIVV---TNSGKMDILEHIVK 109

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
               +D+ +  +   E  +I      R     AF+ IQ+GCD  C +C++P  RG+ +SR
Sbjct: 110 KTDHLDSIFESKGFLEADNISMATRTR-----AFVKIQDGCDSNCAYCIIPSLRGLPVSR 164

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           +   V+ E + L+  G  EI  +G +V    G+ L  E+     L+  +  I+G  R+R 
Sbjct: 165 ASEAVIAEVKTLVKAGYKEIVPVGIHVG-KYGQDLK-EEIDLPHLIEKIIAIEGDFRVRL 222

Query: 266 TTSHPRDMSDCLIKAHGDL-DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           T+    +++D +I+   +  + +  + H+P+QSGS   L  MNR++TA EY   ++R++ 
Sbjct: 223 TSIELNELTDRMIQMLAENTEKICRHYHIPLQSGSSHTLSMMNRKYTAEEYITKLNRLKE 282

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           + P   + +D IVGFPGETDD F  T+D + K G      F YS R GT  S M ++V  
Sbjct: 283 LVPGCLLGADVIVGFPGETDDHFAETLDTLKKSGLEHLHVFSYSDRSGTKASEMSDKVSG 342

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
            VK+ER   L+      +    + CV +I +VL +K         G +    +V    ++
Sbjct: 343 KVKSERAKKLRAFAENVKFHAAEQCVDKIYKVLTQKDN------TGITDNYFTVRFK-ED 395

Query: 445 HNIGDIIKVRITDV-KISTLYGELV 468
              G  + V IT+  K  +L G+++
Sbjct: 396 VEPGSFLDVLITNAYKDGSLKGDIL 420


>gi|306842918|ref|ZP_07475554.1| MiaB-like tRNA modifying enzyme [Brucella sp. BO2]
 gi|306286941|gb|EFM58461.1| MiaB-like tRNA modifying enzyme [Brucella sp. BO2]
          Length = 427

 Score =  319 bits (819), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 126/441 (28%), Positives = 204/441 (46%), Gaps = 29/441 (6%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
             + ++GC++N Y+S  M+    + G   +        I+ NTC +  +A  +    + +
Sbjct: 3   VEIVTFGCRLNTYESEVMKREADAAGLGTLKDG----AIIFNTCAVTAEAVRQARQAIRK 58

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
            R       +E  D  ++V GC AQ E +        V++V+G +   +         FG
Sbjct: 59  AR-------RENPDARIIVTGCAAQTEADNFAA-MGEVDLVLGNEEKLKSNSYRMLPDFG 110

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRG-VTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
               +    V D  E         +   G   AF+ +Q GCD  CTFC++PY RG   S 
Sbjct: 111 VNQFEKVR-VNDIMEVRETASHMVDAIEGRARAFVQVQNGCDHRCTFCIIPYGRGNSRSV 169

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            +  VVD+ ++L+ NG  E+ L G ++ +  G  L G       +   L+++  L RLR 
Sbjct: 170 PMGAVVDQVKRLVGNGYAEVVLTGVDMTS-YGPDLPGNLRLGKLVKTVLAQVPDLQRLRL 228

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
           ++    +  + L++A      LMP+LHL +Q+G D ILK M RRH   +  +    +R++
Sbjct: 229 SSIDSIEADEDLMEAIASEKRLMPHLHLSLQAGDDMILKRMKRRHLRDDSIRFCQTVRAL 288

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
           RPDI   +D I GFP ET++ F+ ++ +V++ G      F YSPR GTP + M  QV   
Sbjct: 289 RPDIVFGADIIAGFPTETEEMFQNSLKIVEECGLTHLHVFPYSPREGTPAARMP-QVRRE 347

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445
           +  ER   L+ +         +A  G    +L+EK G      V R+       ++  N 
Sbjct: 348 IVKERAARLRAEGDRAYEKHLNALHGTRQRLLVEKEG------VARTEGFTLAAVDQGNA 401

Query: 446 NIGDIIKVRITDVKISTLYGE 466
             G+II+ RI  V      GE
Sbjct: 402 --GEIIE-RI--VTGHD--GE 415


>gi|225628132|ref|ZP_03786167.1| MiaB-like tRNA modifying enzyme [Brucella ceti str. Cudo]
 gi|237816294|ref|ZP_04595287.1| MiaB-like tRNA modifying enzyme [Brucella abortus str. 2308 A]
 gi|225616957|gb|EEH14004.1| MiaB-like tRNA modifying enzyme [Brucella ceti str. Cudo]
 gi|237788361|gb|EEP62576.1| MiaB-like tRNA modifying enzyme [Brucella abortus str. 2308 A]
          Length = 447

 Score =  319 bits (819), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 126/441 (28%), Positives = 203/441 (46%), Gaps = 29/441 (6%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
             + ++GC++N Y+S  M+    + G   +        I+ NTC +  +A  +    + +
Sbjct: 23  VEIVTFGCRLNTYESEVMKREADAAGLGTLKDG----AIIFNTCAVTAEAVRQARQAIRK 78

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
            R       +E  D  ++V GC AQ E +        V++V+G +   +         FG
Sbjct: 79  AR-------RENPDARIIVTGCAAQTEADNFAA-MGEVDLVLGNEEKLKSNSYRMLPDFG 130

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRG-VTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
               +    V D  E         +   G   AF+ +Q GCD  CTFC++PY RG   S 
Sbjct: 131 VNQFEKVR-VNDIMEVRETASHMVDAIEGRARAFVQVQNGCDHRCTFCIIPYGRGNSRSV 189

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            +  VVD+ ++L+ NG  E+ L G ++ +  G  L G       +   L+++  L RLR 
Sbjct: 190 PMGAVVDQVKRLVGNGYAEVVLTGVDMTS-YGPDLPGNLRLGKLVKTVLAQVPDLQRLRL 248

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
           ++    +  + L++A      LMP+LHL +Q+G D ILK M RRH   +  +     R++
Sbjct: 249 SSIDSIEADEDLMEAIASEKRLMPHLHLSLQAGDDMILKRMKRRHLRDDSIRFCQTARAL 308

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
           RPDI   +D I GFP ET++ F+ ++ +V++ G      F YSPR GTP + M  QV   
Sbjct: 309 RPDIVFGADIIAGFPTETEEMFQNSLKIVEECGLTHLHVFPYSPREGTPAARMP-QVRRE 367

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445
           +  ER   L+ +         +A  G    +L+EK G      V R+       ++  N 
Sbjct: 368 IVKERAARLRAEGDRAYEKHLNALHGTRQRLLVEKEG------VARTEGFTLAAVDQGNA 421

Query: 446 NIGDIIKVRITDVKISTLYGE 466
             G+II+ RI  V      GE
Sbjct: 422 --GEIIE-RI--VTGHD--GE 435


>gi|325279061|ref|YP_004251603.1| MiaB-like tRNA modifying enzyme [Odoribacter splanchnicus DSM
           20712]
 gi|324310870|gb|ADY31423.1| MiaB-like tRNA modifying enzyme [Odoribacter splanchnicus DSM
           20712]
          Length = 428

 Score =  319 bits (819), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 116/436 (26%), Positives = 194/436 (44%), Gaps = 17/436 (3%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           I  ++    + GC++N  ++  +      +G E V   + AD+ V+NTC + + A +K  
Sbjct: 3   IAGKKVAYITLGCKLNFSETSTIRHSLEKEGTETVADKEGADIFVINTCSVTDMAEKKGR 62

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             + +I       I       +VV GC AQ   +EI+     V++V+G    + +   L+
Sbjct: 63  QLIRKI-------IHHNPGAYIVVVGCYAQLRAKEIMA-IDGVSLVLGAGEKFNVAHYLQ 114

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
                ++             ++S  D  Y+       FL IQ+GCD FCT+C +P+ RG 
Sbjct: 115 HLEEQEK----QEPHSCDIFKISNFDLAYSFGDRTRCFLKIQDGCDYFCTYCTIPFARGR 170

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
             S SL +++D  R++   G+ E+ L G N     G    G    F  LL  L   + + 
Sbjct: 171 SRSASLPRILDALREVAGKGIQEVILTGVNT----GDFGRGTDMNFLQLLQQLDRQEEIA 226

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R R ++  P  ++D +I+        MP+ H+P+QSGSD +LK M+RR+    +   I  
Sbjct: 227 RFRISSIEPNLLTDEIIEFVATSKRFMPHFHIPLQSGSDEVLKLMHRRYDRELFAGKIRT 286

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           IR + PD  I  D I G  GET+  F   +  ++ +  ++   F YS R GT   ++   
Sbjct: 287 IRHLLPDAFIGVDVIAGMRGETEACFEDALRFIETLDISRLHVFPYSERQGTKALDIPLT 346

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           V +  K  R+  L    +++  +F     G+   VL E   K    + G +     V L 
Sbjct: 347 VPQEEKHRRVNRLISVSQKKLTAFYHRFEGETRPVLFE-DNKIGQYICGFTDNYIKVKLP 405

Query: 442 SKNHNIGDIIKVRITD 457
                   II +R+  
Sbjct: 406 YDAGLANRIIPIRLEK 421


>gi|89052810|ref|YP_508261.1| MiaB-like tRNA modifying enzyme [Jannaschia sp. CCS1]
 gi|88862359|gb|ABD53236.1| MiaB-like tRNA modifying enzyme [Jannaschia sp. CCS1]
          Length = 419

 Score =  319 bits (819), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 127/436 (29%), Positives = 205/436 (47%), Gaps = 39/436 (8%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
             + GC++N Y++  M +M    G E        + +V+NTC +  +A  K    + ++R
Sbjct: 6   FHTLGCRLNAYETEAMREMTAQAGLE--------NAVVVNTCAVTAEAVRKARQEIRKLR 57

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG------PQTYYRLP-ELLE 141
                  ++     V+V GC AQ E          V++V+G      P+T+  +P + + 
Sbjct: 58  -------RDSPGAKVIVTGCAAQTEPAT-FEAMEEVDLVLGNSEKMTPETWQAMPADFIG 109

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
                +  VD   SV +  + L  +DG   R R   A++ +Q GCD  CTFC++PY RG 
Sbjct: 110 NTEKVR--VDDIMSVTETAQHL--IDGFGTRSR---AYVQVQNGCDHRCTFCIIPYGRGN 162

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
             S     VVD+ ++L+D G  E+ L G ++ +W G  L         ++  L  +  L 
Sbjct: 163 SRSVPAGVVVDQIKRLVDRGYNEVVLTGVDMTSW-GADLPAAPRLGDLVMRILKLVPDLP 221

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           RLR ++    ++ D L++A      LMP+LHL +Q G D ILK M RRH   +     + 
Sbjct: 222 RLRISSIDSIEVDDALMQAIATEPRLMPHLHLSLQHGDDLILKRMKRRHLRDDAIAFCEE 281

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
            R +RP+I   +D I GFP ET+  F+ ++ LV++        F YSPR GTP + M   
Sbjct: 282 ARRLRPEITFGADIIAGFPTETEAHFQNSVKLVEECDLTWLHVFPYSPREGTPAARMP-A 340

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           VD      R   L+ K      +     +GQ+  +L+E         +GR+     VV  
Sbjct: 341 VDGPTIKARAKQLRAKGEAAVNAHLSKQIGQLHNILMESPK------IGRTEQFTEVVF- 393

Query: 442 SKNHNIGDIIKVRITD 457
           +++   G+I+   IT 
Sbjct: 394 AEDQPEGEIVSAYITG 409


>gi|281425800|ref|ZP_06256713.1| 2-methylthioadenine synthetase [Prevotella oris F0302]
 gi|281400061|gb|EFB30892.1| 2-methylthioadenine synthetase [Prevotella oris F0302]
          Length = 446

 Score =  319 bits (819), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 116/450 (25%), Positives = 202/450 (44%), Gaps = 19/450 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++    + GC++N  ++     M    G       ++AD+ ++NTC + + A  K    +
Sbjct: 10  KKATYYTLGCKLNFSETSTFGKMLSDMGVVTAAKGEEADICLINTCSVTDVADHKCRQAI 69

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R+       ++E     ++V GC AQ E E +  + P V++V+G      L + L  A 
Sbjct: 70  HRM-------VRENPGAFIIVTGCYAQLESERV-SKIPGVDLVLGSNEKANLIQYLNDAF 121

Query: 145 FGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             +      +     + + +       +R      FL +Q+GC+ FCT+C +PY RG   
Sbjct: 122 IDRTAGTAQHKYHAVRTKDIKTFQASCSRGNRTRYFLKVQDGCNYFCTYCTIPYARGFSR 181

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           + S++ +V +A +    G  EI L G N+    G   +     F DL+ +L +++G+ R 
Sbjct: 182 NPSIASLVAQAEEAAAEGGKEIVLTGVNI----GHFGETTHEKFIDLVKALDKVEGIKRF 237

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R ++  P  + D LI    +    MP+ H+P+QSGSD +LK M+RR+    +   I+ I+
Sbjct: 238 RISSLEPDLIDDDLIAFCAESRAFMPHFHIPLQSGSDAVLKLMHRRYDTALFAHKIELIK 297

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
            + PD  I  D +VG  GE  + F      +  +   Q   F YS R GT   ++   V+
Sbjct: 298 KLMPDAFIGVDVMVGSRGEKPEYFEDCYQFLAHLPVTQLHVFPYSERPGTSALSIPYVVE 357

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN-- 441
           E  K  R   L      +   F    +G   EVL EK    K  + G +     V L   
Sbjct: 358 EKDKKLRSKRLLALSDTKTQDFYQQFIGTEREVLFEKAPHGKA-MHGFTDNYIRVELPPS 416

Query: 442 -SKNHNIGDIIKVRITD--VKISTLYGELV 468
            ++     ++++V++ +     S L  EL+
Sbjct: 417 QARTEYDNELMRVKLGEFNHDKSALRAELI 446


>gi|23502783|ref|NP_698910.1| hypothetical protein BR1933 [Brucella suis 1330]
 gi|62290787|ref|YP_222580.1| hypothetical protein BruAb1_1909 [Brucella abortus bv. 1 str.
           9-941]
 gi|82700698|ref|YP_415272.1| elongator protein 3 [Brucella melitensis biovar Abortus 2308]
 gi|148559183|ref|YP_001259755.1| hypothetical protein BOV_1860 [Brucella ovis ATCC 25840]
 gi|161619851|ref|YP_001593738.1| MiaB-like tRNA modifying enzyme [Brucella canis ATCC 23365]
 gi|163843956|ref|YP_001628360.1| MiaB-like tRNA modifying enzyme [Brucella suis ATCC 23445]
 gi|189025001|ref|YP_001935769.1| elongator protein 3 [Brucella abortus S19]
 gi|254690074|ref|ZP_05153328.1| elongator protein 3 [Brucella abortus bv. 6 str. 870]
 gi|254694562|ref|ZP_05156390.1| elongator protein 3 [Brucella abortus bv. 3 str. Tulya]
 gi|254696187|ref|ZP_05158015.1| elongator protein 3 [Brucella abortus bv. 2 str. 86/8/59]
 gi|254700574|ref|ZP_05162402.1| elongator protein 3 [Brucella suis bv. 5 str. 513]
 gi|254704944|ref|ZP_05166772.1| elongator protein 3 [Brucella suis bv. 3 str. 686]
 gi|254707542|ref|ZP_05169370.1| elongator protein 3 [Brucella pinnipedialis M163/99/10]
 gi|254708921|ref|ZP_05170732.1| elongator protein 3 [Brucella pinnipedialis B2/94]
 gi|254731105|ref|ZP_05189683.1| elongator protein 3 [Brucella abortus bv. 4 str. 292]
 gi|256030447|ref|ZP_05444061.1| elongator protein 3 [Brucella pinnipedialis M292/94/1]
 gi|256059907|ref|ZP_05450093.1| elongator protein 3 [Brucella neotomae 5K33]
 gi|256158431|ref|ZP_05456329.1| elongator protein 3 [Brucella ceti M490/95/1]
 gi|256253851|ref|ZP_05459387.1| elongator protein 3 [Brucella ceti B1/94]
 gi|256258327|ref|ZP_05463863.1| elongator protein 3 [Brucella abortus bv. 9 str. C68]
 gi|256370335|ref|YP_003107846.1| hypothetical protein BMI_I1955 [Brucella microti CCM 4915]
 gi|260169357|ref|ZP_05756168.1| hypothetical protein BruF5_13565 [Brucella sp. F5/99]
 gi|260546051|ref|ZP_05821791.1| elongator protein 3 [Brucella abortus NCTC 8038]
 gi|260567580|ref|ZP_05838050.1| elongator protein 3 [Brucella suis bv. 4 str. 40]
 gi|260755612|ref|ZP_05867960.1| conserved hypothetical protein [Brucella abortus bv. 6 str. 870]
 gi|260758837|ref|ZP_05871185.1| conserved hypothetical protein [Brucella abortus bv. 4 str. 292]
 gi|260760561|ref|ZP_05872904.1| conserved hypothetical protein [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260884638|ref|ZP_05896252.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68]
 gi|261214886|ref|ZP_05929167.1| conserved hypothetical protein [Brucella abortus bv. 3 str. Tulya]
 gi|261220989|ref|ZP_05935270.1| conserved hypothetical protein [Brucella ceti B1/94]
 gi|261315023|ref|ZP_05954220.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10]
 gi|261316420|ref|ZP_05955617.1| conserved hypothetical protein [Brucella pinnipedialis B2/94]
 gi|261323879|ref|ZP_05963076.1| conserved hypothetical protein [Brucella neotomae 5K33]
 gi|261751082|ref|ZP_05994791.1| conserved hypothetical protein [Brucella suis bv. 5 str. 513]
 gi|261755644|ref|ZP_05999353.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686]
 gi|261758875|ref|ZP_06002584.1| elongator protein 3 [Brucella sp. F5/99]
 gi|265987491|ref|ZP_06100048.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1]
 gi|265996948|ref|ZP_06109505.1| conserved hypothetical protein [Brucella ceti M490/95/1]
 gi|294851175|ref|ZP_06791848.1| MiaB-like tRNA modifying enzyme [Brucella sp. NVSL 07-0026]
 gi|297247174|ref|ZP_06930892.1| MiaB-like tRNA modifying enzyme [Brucella abortus bv. 5 str. B3196]
 gi|23348804|gb|AAN30825.1| conserved hypothetical protein [Brucella suis 1330]
 gi|62196919|gb|AAX75219.1| conserved hypothetical protein [Brucella abortus bv. 1 str. 9-941]
 gi|82616799|emb|CAJ11889.1| Protein of unknown function UPF0004:MiaB-like tRNA modifying
           enzyme:Elongator protein 3/MiaB/NifB:Radical SAM
           [Brucella melitensis biovar Abortus 2308]
 gi|148370440|gb|ABQ60419.1| conserved hypothetical protein [Brucella ovis ATCC 25840]
 gi|161336662|gb|ABX62967.1| MiaB-like tRNA modifying enzyme [Brucella canis ATCC 23365]
 gi|163674679|gb|ABY38790.1| MiaB-like tRNA modifying enzyme [Brucella suis ATCC 23445]
 gi|189020573|gb|ACD73295.1| elongator protein 3 [Brucella abortus S19]
 gi|256000498|gb|ACU48897.1| hypothetical protein BMI_I1955 [Brucella microti CCM 4915]
 gi|260096158|gb|EEW80034.1| elongator protein 3 [Brucella abortus NCTC 8038]
 gi|260157098|gb|EEW92178.1| elongator protein 3 [Brucella suis bv. 4 str. 40]
 gi|260669155|gb|EEX56095.1| conserved hypothetical protein [Brucella abortus bv. 4 str. 292]
 gi|260670993|gb|EEX57814.1| conserved hypothetical protein [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260675720|gb|EEX62541.1| conserved hypothetical protein [Brucella abortus bv. 6 str. 870]
 gi|260874166|gb|EEX81235.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68]
 gi|260916493|gb|EEX83354.1| conserved hypothetical protein [Brucella abortus bv. 3 str. Tulya]
 gi|260919573|gb|EEX86226.1| conserved hypothetical protein [Brucella ceti B1/94]
 gi|261295643|gb|EEX99139.1| conserved hypothetical protein [Brucella pinnipedialis B2/94]
 gi|261299859|gb|EEY03356.1| conserved hypothetical protein [Brucella neotomae 5K33]
 gi|261304049|gb|EEY07546.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10]
 gi|261738859|gb|EEY26855.1| elongator protein 3 [Brucella sp. F5/99]
 gi|261740835|gb|EEY28761.1| conserved hypothetical protein [Brucella suis bv. 5 str. 513]
 gi|261745397|gb|EEY33323.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686]
 gi|262551416|gb|EEZ07406.1| conserved hypothetical protein [Brucella ceti M490/95/1]
 gi|264659688|gb|EEZ29949.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1]
 gi|294819764|gb|EFG36763.1| MiaB-like tRNA modifying enzyme [Brucella sp. NVSL 07-0026]
 gi|297174343|gb|EFH33690.1| MiaB-like tRNA modifying enzyme [Brucella abortus bv. 5 str. B3196]
          Length = 427

 Score =  319 bits (818), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 126/441 (28%), Positives = 203/441 (46%), Gaps = 29/441 (6%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
             + ++GC++N Y+S  M+    + G   +        I+ NTC +  +A  +    + +
Sbjct: 3   VEIVTFGCRLNTYESEVMKREADAAGLGTLKDG----AIIFNTCAVTAEAVRQARQAIRK 58

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
            R       +E  D  ++V GC AQ E +        V++V+G +   +         FG
Sbjct: 59  AR-------RENPDARIIVTGCAAQTEADNFAA-MGEVDLVLGNEEKLKSNSYRMLPDFG 110

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRG-VTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
               +    V D  E         +   G   AF+ +Q GCD  CTFC++PY RG   S 
Sbjct: 111 VNQFEKVR-VNDIMEVRETASHMVDAIEGRARAFVQVQNGCDHRCTFCIIPYGRGNSRSV 169

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            +  VVD+ ++L+ NG  E+ L G ++ +  G  L G       +   L+++  L RLR 
Sbjct: 170 PMGAVVDQVKRLVGNGYAEVVLTGVDMTS-YGPDLPGNLRLGKLVKTVLAQVPDLQRLRL 228

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
           ++    +  + L++A      LMP+LHL +Q+G D ILK M RRH   +  +     R++
Sbjct: 229 SSIDSIEADEDLMEAIASEKRLMPHLHLSLQAGDDMILKRMKRRHLRDDSIRFCQTARAL 288

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
           RPDI   +D I GFP ET++ F+ ++ +V++ G      F YSPR GTP + M  QV   
Sbjct: 289 RPDIVFGADIIAGFPTETEEMFQNSLKIVEECGLTHLHVFPYSPREGTPAARMP-QVRRE 347

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445
           +  ER   L+ +         +A  G    +L+EK G      V R+       ++  N 
Sbjct: 348 IVKERAARLRAEGDRAYEKHLNALHGTRQRLLVEKEG------VARTEGFTLAAVDQGNA 401

Query: 446 NIGDIIKVRITDVKISTLYGE 466
             G+II+ RI  V      GE
Sbjct: 402 --GEIIE-RI--VTGHD--GE 415


>gi|306843383|ref|ZP_07475984.1| MiaB-like tRNA modifying enzyme [Brucella sp. BO1]
 gi|306276074|gb|EFM57774.1| MiaB-like tRNA modifying enzyme [Brucella sp. BO1]
          Length = 427

 Score =  319 bits (818), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 126/441 (28%), Positives = 205/441 (46%), Gaps = 29/441 (6%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
             + ++GC++N Y+S  M+    + G   +        I+ NTC +  +A  +    + +
Sbjct: 3   VEIVTFGCRLNTYESEVMKREADAAGLGTLKDG----AIIFNTCAVTAEAVRQARQAIRK 58

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
            R       +E  D  ++V GC AQ E +        V++V+G +   +         FG
Sbjct: 59  AR-------RENPDARIIVTGCAAQTEADNFAA-MGEVDLVLGNEEKLKSNSYRMLPDFG 110

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRG-VTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
               +    V D  E         +   G   AF+ +Q GCD  CTFC++PY RG   S 
Sbjct: 111 VNQFEKVR-VNDIMEVRETASHMVDAIEGRARAFVQVQNGCDHRCTFCIIPYGRGNSRSV 169

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            +  VVD+ ++L+ NG  E+ L G ++ +  G  L G       +   L+++  L RLR 
Sbjct: 170 PMGAVVDQVKRLVGNGYAEVVLTGVDMTS-YGPDLPGNLRLGKLVKTVLAQVPDLQRLRL 228

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
           ++    +  + L++A      LMP+LHL +Q+G D ILK M RRH   +  +  + +R++
Sbjct: 229 SSIDSIEADEDLMEAIASEKRLMPHLHLSLQAGDDMILKRMKRRHLRDDSIRFCETVRAL 288

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
           RPDI   +D I GFP ET++ F+ ++ +V++ G      F YSPR GTP + M  QV   
Sbjct: 289 RPDIVFGADIIAGFPTETEEMFQNSLKIVEECGLTHLHVFPYSPREGTPAARMP-QVRRE 347

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445
           +  ER   L+ +         +A  G    +L+EK G      V R+       ++  N 
Sbjct: 348 IVKERAARLRTEGDRAYEKHLNALHGTRQRLLVEKEG------VARTEGFTLAAVDQGNA 401

Query: 446 NIGDIIKVRITDVKISTLYGE 466
             G+II+ RI  V      GE
Sbjct: 402 --GEIIE-RI--VTGHD--GE 415


>gi|330466391|ref|YP_004404134.1| MiaB-like tRNA modifying protein ylig [Verrucosispora maris
           AB-18-032]
 gi|328809362|gb|AEB43534.1| miab-like tRNA modifying enzyme ylig [Verrucosispora maris
           AB-18-032]
          Length = 492

 Score =  319 bits (818), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 118/494 (23%), Positives = 198/494 (40%), Gaps = 57/494 (11%)

Query: 13  MVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHI 72
           MVS         +R  + + GC  N  DS  +     + G++     + AD++V+NTC  
Sbjct: 1   MVSATSSDG---RRVALLTLGCARNEVDSEELAARLHADGWQVTTDGEGADVVVVNTCGF 57

Query: 73  REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT 132
            EKA +     L    +             VV AGC+A+  G E+    P    V+    
Sbjct: 58  VEKAKQDSIQTLLAAAD---------TGAKVVAAGCMAERYGRELADSLPEAQAVLSFDD 108

Query: 133 YYRLPELLERARFGKRVVDTDYSVEDKFERLSIVD------------------------- 167
           Y ++   L+    G+    T ++  D+ E L +                           
Sbjct: 109 YPQIAARLDAVVEGREF--TAHTPRDRRELLPLTPVARRDSAVSLPGHGRGADVDEHTPA 166

Query: 168 --GGYNRKR---GVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGV 222
                 R+R   G  A L +  GCD+ C FC +P  RG  +SR+  +++ EA  L  +GV
Sbjct: 167 HLRPVLRRRLDSGPVASLKLASGCDRRCAFCAIPAFRGAFVSRTPDELLAEAEWLAKSGV 226

Query: 223 CEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHG 282
            E+ L+ +N  +  GK L G+      LL  L+ I G+VR+R +   P +    LI+A  
Sbjct: 227 RELVLVSENSTS-YGKDL-GDPRALEKLLPQLAAIDGIVRVRASYLQPAETRPGLIEAIA 284

Query: 283 DLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGE 342
               + PY  L  Q  S+ +L+ M R  +   + +++   R + P     S+FIVGFPGE
Sbjct: 285 TTPGVAPYFDLSFQHSSEPVLRRMRRFGSTDRFLELLASARELDPQAGARSNFIVGFPGE 344

Query: 343 TDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQ 402
           T  D    +  + +        F YS   GT  + +  +V       R   L     E  
Sbjct: 345 TRADVDELVRFLTEARLDAIGMFDYSDEDGTEAAGLPGKVSAATIKRRYDKLSALADELC 404

Query: 403 VSFNDACVGQIIEVLIEKHGKE--KGKLVGRSPWLQS---VVLNSKN------HNIGDII 451
               +  +G  +EVL++    +  +G+   ++P +     +V              GD++
Sbjct: 405 SQRAEDRLGTTVEVLVDSIEGDVVEGRAAHQAPEVDGSTTLVAPDDGGVDLAALRPGDLV 464

Query: 452 KVRITDVKISTLYG 465
           +  +T  +   L  
Sbjct: 465 RATVTGTEGVDLLA 478


>gi|254512588|ref|ZP_05124654.1| MiaB-like tRNA modifying enzyme [Rhodobacteraceae bacterium KLH11]
 gi|221532587|gb|EEE35582.1| MiaB-like tRNA modifying enzyme [Rhodobacteraceae bacterium KLH11]
          Length = 418

 Score =  319 bits (818), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 122/445 (27%), Positives = 201/445 (45%), Gaps = 32/445 (7%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + P +F   + GC++N Y++  M+++    G         +D +V+NTC +  +A  K  
Sbjct: 1   MNPPKF--STLGCRLNAYETEAMKELSQQAGL--------SDAVVVNTCAVTAEAVRKAR 50

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT---YYRLPE 138
             + R+R       +E     ++V GC AQ E +    R   V+ V+G            
Sbjct: 51  QEIRRLR-------RENPSARLIVTGCAAQTEPDTFA-RMDEVDAVIGNTEKMLPDTWKS 102

Query: 139 LLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
           +          V  D  +        ++DG   R R   A++ +Q GCD  CTFC++PY 
Sbjct: 103 MAADFIGKTEAVQVDDIMSVTETAGHLIDGFGTRSR---AYVQVQNGCDHRCTFCIIPYG 159

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258
           RG   S     VVD+ ++L+D G  E+ L G ++ +W G  L  +      ++  L  + 
Sbjct: 160 RGNSRSVPAGVVVDQIKRLVDKGYNEVVLTGVDLTSW-GADLPAQPKLGDLVMRILKLVP 218

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
            L RLR ++    ++ + L++A      LMP+LHL +Q G D ILK M RRH   +  + 
Sbjct: 219 ELPRLRISSIDSIEVDENLMQAIATEPRLMPHLHLSLQHGDDLILKRMKRRHLRDDAIRF 278

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
            +  R +RPD+   +D I GFP E+D  F  ++ LV          F YS R GTP + +
Sbjct: 279 TEEARKLRPDMTFGADIIAGFPTESDAHFENSLKLVTDCDLTWLHVFPYSKRAGTPAARI 338

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSV 438
            +Q++ NV  +R   L+     Q  +   A +G+   +L+E         +GR+     V
Sbjct: 339 PQQINGNVIRDRAARLRAAGEAQVQNHLAAQIGKTHRILMENP------HMGRTEQFTEV 392

Query: 439 VLNSKNHNIGDIIKVRITDVKISTL 463
             ++     G I+   IT      L
Sbjct: 393 TFDAAQPE-GQIVTASITGHSGQKL 416


>gi|314918239|gb|EFS82070.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes
           HL050PA1]
          Length = 474

 Score =  319 bits (818), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 128/479 (26%), Positives = 204/479 (42%), Gaps = 46/479 (9%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
              + S GC  N  DS  +     + G+  V+   +A+ +V+NTC   E+A +     L 
Sbjct: 2   TVHLVSMGCARNDVDSEELAARMEAGGFRLVDDPAEAETVVVNTCGFIEQAKKDSVDTLL 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
              +LK +    G    VV  GC+A+  G E+    P  + V+G   Y  +   L     
Sbjct: 62  AAADLKGN----GITTSVVAVGCMAERYGRELAESLPEADAVLGFDDYGDIAGRLRTILD 117

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKR------------------------------- 174
           G  +             +S VD    R                                 
Sbjct: 118 GGSLETHVPRDRRTLLPISPVDRPTARAEVSVPGHGTAPDLSASVTPDSGPRATRRRLGT 177

Query: 175 GVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA 234
           G +A L +  GCD+ C FC +P+ RG  +SR ++++V+EAR L+D+GV E+ L+ +N ++
Sbjct: 178 GPSAPLKMASGCDRRCAFCAIPHFRGSYLSRPIAEIVEEARWLVDHGVKEVFLVSEN-SS 236

Query: 235 WRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP 294
             GK L G+      LL +L ++ GL  +R +   P ++   LI      D ++PY  L 
Sbjct: 237 SYGKDL-GDLRLLEKLLVNLDQVDGLEWIRVSYLQPAELRPGLIDTILATDKVVPYFDLS 295

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
            Q  S  +L+ M R   A  +  IID IRS  P+  + S+FI GFPGETD D     D +
Sbjct: 296 FQHASGPLLRRMRRFGDAESFLNIIDSIRSRCPEAGLRSNFITGFPGETDADVAVLADFL 355

Query: 355 DKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQII 414
            +     A  F YS   GT  + +   VDE+V   R   L     E      +  +G   
Sbjct: 356 QRARLDVAGVFAYSDEEGTEAAGLDGHVDEDVVTARREDLADLTDELVSQRAEDRIGTRG 415

Query: 415 EVLIEKHGKEKGKLVGRS----PWLQSVV--LNSKNHNIGDIIKVRITDVKISTLYGEL 467
            V++E+  +    ++GR+    P +   V  +++   ++GDI+ V         L    
Sbjct: 416 RVMVEEIDEA---VIGRAEHQGPEVDGCVPLVDAAAVSVGDIVDVEFVGSDGVDLVARP 471


>gi|314915477|gb|EFS79308.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes
           HL005PA4]
 gi|314920052|gb|EFS83883.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes
           HL050PA3]
 gi|314932066|gb|EFS95897.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes
           HL067PA1]
 gi|314955937|gb|EFT00337.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes
           HL027PA1]
 gi|314958142|gb|EFT02245.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes
           HL002PA1]
 gi|315101136|gb|EFT73112.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes
           HL046PA1]
 gi|327450811|gb|EGE97465.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes
           HL087PA3]
 gi|327453843|gb|EGF00498.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes
           HL083PA2]
 gi|328754231|gb|EGF67847.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes
           HL087PA1]
 gi|328754519|gb|EGF68135.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes
           HL025PA2]
          Length = 474

 Score =  319 bits (818), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 128/479 (26%), Positives = 204/479 (42%), Gaps = 46/479 (9%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
              + S GC  N  DS  +     + G+  V+   +A+ +V+NTC   E+A +     L 
Sbjct: 2   TVHLVSMGCARNDVDSEELAARMEAGGFRLVDDPAEAETVVVNTCGFIEQAKKDSVDTLL 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
              +LK +    G    VV  GC+A+  G E+    P  + V+G   Y  +   L     
Sbjct: 62  AAADLKGN----GITTSVVAVGCMAERYGRELAESLPEADAVLGFDDYGDIAGRLRTILD 117

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKR------------------------------- 174
           G  +             +S VD    R                                 
Sbjct: 118 GGSLETHVPRDRRTLLPISPVDRPTARAEVSVPGHGTAPDLSASVTPDSGPRATRRRLGT 177

Query: 175 GVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA 234
           G +A L +  GCD+ C FC +P+ RG  +SR ++++V+EAR L+D+GV E+ L+ +N ++
Sbjct: 178 GPSAPLKMASGCDRRCAFCAIPHFRGSYLSRPIAEIVEEARWLVDHGVKEVFLVSEN-SS 236

Query: 235 WRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP 294
             GK L G+      LL +L ++ GL  +R +   P ++   LI      D ++PY  L 
Sbjct: 237 SYGKDL-GDLRLLEKLLVNLDQVDGLEWIRVSYLQPAELRPGLIDTILATDKVVPYFDLS 295

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
            Q  S  +L+ M R   A  +  IID IRS  P+  + S+FI GFPGETD D     D +
Sbjct: 296 FQHASGPLLRRMRRFGDAESFLNIIDSIRSRCPEAGLRSNFITGFPGETDADVAVLADFL 355

Query: 355 DKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQII 414
            +     A  F YS   GT  + +   VDE+V   R   L     E      +  +G   
Sbjct: 356 QRARLDVAGVFAYSDEEGTEAAGLDGHVDEDVVTARREDLADLTDELVSQRAEDRIGTRG 415

Query: 415 EVLIEKHGKEKGKLVGRS----PWLQSVV--LNSKNHNIGDIIKVRITDVKISTLYGEL 467
            V++E+  +    ++GR+    P +   V  +++   ++GDI+ V         L    
Sbjct: 416 RVMVEEIDEA---VIGRAEHQGPEVDGCVTLVDAAAVSVGDIVDVEFVGSDGVDLVARP 471


>gi|297183256|gb|ADI19395.1| 2-methylthioadenine synthetase [uncultured Spirochaetales bacterium
           HF0500_06B09]
          Length = 455

 Score =  319 bits (817), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 130/431 (30%), Positives = 216/431 (50%), Gaps = 18/431 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R  V++ GC++N ++   ++  F  +GY  V+S D AD+IV+N+C +  +A  K  + L 
Sbjct: 6   RVTVETLGCRLNAFEGDALKADFSRRGYRVVDSGDPADVIVINSCTVTGQADRKSRNALY 65

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R R +    + E    LVV  GC+A    +  +   P V+ VV  +    +  +++    
Sbjct: 66  RARRI--GDLDEDSRPLVVATGCMA-TGQQATVSALPGVDYVVDNEHKAGIAAIVDAHLS 122

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G+       S                       FL IQ+GCD  C+FC++P+ RG  ISR
Sbjct: 123 GE------ISPPSAVPSGPFAYDQGEHTARARRFLKIQDGCDNRCSFCIIPFVRGRAISR 176

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            L+ ++DEAR++ID+G  EI + G N+  +   G++     F+ L+  L  + G  R+R 
Sbjct: 177 PLAAILDEARQIIDDGFHEIVITGVNIGRYLHDGVN-----FATLIEKLLALPGQFRVRL 231

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
           ++  P       I    D + L P+LHL +QSGSDR+L +M R +    + Q+ID  R V
Sbjct: 232 SSLEPDHQIAPAIDLLTD-ERLCPHLHLCLQSGSDRVLLAMRRLYNLESFEQLIDNARHV 290

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
           RPD+  ++D +VGFPGETD DF AT   V+++G+    +F+Y+ R GT  + M  QVD+ 
Sbjct: 291 RPDLNATTDILVGFPGETDADFAATCRAVERLGFTHCHTFRYAKRNGTRAARMENQVDDA 350

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN-SKN 444
            K  R   ++K     + ++    +G   ++L+E    +  +  G       +    + +
Sbjct: 351 TKQRRSNTVRKLAATNRAAYLRRLLGNKQKLLVESVSNQIAR--GYGECFIPIQAPCADS 408

Query: 445 HNIGDIIKVRI 455
             +   I VRI
Sbjct: 409 SLVRGFIDVRI 419


>gi|319404904|emb|CBI78505.1| conserved hypothetical protein [Bartonella rochalimae ATCC
           BAA-1498]
          Length = 427

 Score =  319 bits (817), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 115/443 (25%), Positives = 195/443 (44%), Gaps = 24/443 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
              + ++GC++N Y+S  +     S G     +      I+ NTC +  +A  +    + 
Sbjct: 2   TIEIVTFGCRLNSYESEIIRKESTSAGL----NELKGGAIIFNTCAVTAEAVRQAKQAIR 57

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           + +       ++     ++V GC AQ E +        V++++G +         +   F
Sbjct: 58  KAK-------RKNPHACIIVTGCAAQTEAKN-FSLMKEVDLILGNEEKLHAHSYRQLPDF 109

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRG-VTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
           G    D    V D  E   I     N   G   AF+ +Q GCD  CTFC++PY+RG   S
Sbjct: 110 GIN-HDEKLRVNDIMEVHKIAPHMINALEGRTRAFVQVQNGCDHRCTFCIIPYSRGRSRS 168

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
             +  ++++ ++L+ NG+ EI L G ++ +  G  L G+      +   L  +  L RLR
Sbjct: 169 VPMGIIIEQIKQLVGNGIQEIVLTGVDLTS-YGPDLPGKITLGKLVSTILHHVPDLPRLR 227

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
            ++    +    LI        +MP+LHL +Q+G + ILK M RRH      Q    +R+
Sbjct: 228 LSSIDSIEADQELINLLAYEKRIMPHLHLSLQAGDNMILKRMKRRHLRENAIQFCQDLRA 287

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
            RP I   +D I GFP ET++ F+ ++ L+ + G      F +SPR GTP + M  Q+  
Sbjct: 288 KRPTIVYGADLIAGFPTETEEMFQNSLALIHECGLTHLHVFPFSPREGTPAARMP-QISR 346

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
            +   R   L+K+  +               +L+E+ G      +GR+       +  K+
Sbjct: 347 EIIKIRAEKLRKEGEKAYQKHLIYLKNSQQAILVERDG------IGRTEDYTLTQI--KD 398

Query: 445 HNIGDIIKVRITDVKISTLYGEL 467
              G I+K  I D   + L   L
Sbjct: 399 VKAGAIVKALIVDHDGNKLIATL 421


>gi|121601837|ref|YP_988357.1| MiaB family tRNA modification protein [Bartonella bacilliformis
           KC583]
 gi|120614014|gb|ABM44615.1| tRNA modification enzyme, MiaB family [Bartonella bacilliformis
           KC583]
          Length = 427

 Score =  319 bits (817), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 115/441 (26%), Positives = 192/441 (43%), Gaps = 24/441 (5%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
             + ++GC++N Y+S  +     S G +++        I+ NTC +  +A  +    + +
Sbjct: 3   VKIVTFGCRLNSYESEVIRQKSSSAGLDQLKDG----AIIFNTCAVTSEAVRQAKQAIRK 58

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
            R       +E     ++V GC AQ E +        V++++G +         +   FG
Sbjct: 59  AR-------RENPHTRIIVTGCAAQTETDN-FSLMTEVDLILGNEDKLHAHSYRQLPDFG 110

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRG-VTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
               D    V D  E         N   G   AF+ IQ GCD  CTFC++PY RG   S 
Sbjct: 111 IN-HDEKIRVNDIMEVRKNAPHMINSIEGRTRAFVQIQNGCDHRCTFCIIPYGRGPSRSV 169

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            +  ++++ ++LIDNG+ E+ L G ++ +  G  L G+      +   L  I  L RL  
Sbjct: 170 PMGTIIEQIKRLIDNGIQEVVLTGVDLTS-YGSNLPGKATLGKLVSAILHHIPDLPRLHL 228

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
           ++    +    LI      + +MP+LHL +Q+G + ILK M RRH      Q    +R+ 
Sbjct: 229 SSIDSIEADQELIDLLAYEERIMPHLHLSLQAGDNMILKRMKRRHLREHAIQFCQDLRAK 288

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
           RP +   +D I GFP ET+  F+ +++L++  G      F +SPR GTP + M  QV+  
Sbjct: 289 RPSMVYGADLIAGFPTETEKMFQNSLNLINDCGLIHLHVFPFSPRKGTPAARMP-QVNRE 347

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445
               R   L+K   +              ++L+E+        +GR+       +     
Sbjct: 348 TIKMRAEKLRKAGEKAYQKHLSYLQNTKQKILVERDE------IGRTEDYTLTHIKG--A 399

Query: 446 NIGDIIKVRITDVKISTLYGE 466
             G I+K  I D   + L   
Sbjct: 400 KAGTIVKALIIDHDGNKLIAR 420


>gi|307595884|ref|YP_003902201.1| MiaB family RNA modification enzyme [Vulcanisaeta distributa DSM
           14429]
 gi|307551085|gb|ADN51150.1| RNA modification enzyme, MiaB family [Vulcanisaeta distributa DSM
           14429]
          Length = 452

 Score =  319 bits (817), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 122/452 (26%), Positives = 206/452 (45%), Gaps = 29/452 (6%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           +  +F V ++GC +N  DS  M     S G+E    ++ AD I++NTC +RE+A      
Sbjct: 1   MGGKFTVITFGCWLNKADSDIMITKLRSLGWEYTEDVESADTIIVNTCAVREEAERNELK 60

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            L R+         E     ++VAGC+ +     I   SP   ++          EL++ 
Sbjct: 61  LLKRLSE-------EYPGKRLIVAGCLTRIRPATIKDVSPNAMLISSHGA-----ELIDE 108

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR--- 199
                  V        K+     +   Y    G    + IQ GC   C+FCV    R   
Sbjct: 109 VVSSNTDVHVYEDRPAKY-----LPNYYPELHGHRYVVPIQVGCLGNCSFCVTKIGRMGF 163

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G   S  +  +V+     +  G  EI L GQ ++A  G+    +     +    L+++ G
Sbjct: 164 GRVKSYGIDDIVNAITNAVSKGAREIYLTGQEISA-YGRDRGYDLADLLE--KILAKVDG 220

Query: 260 LVRLRYTTSHPRDMSDC---LIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
              +R     P ++S     L+        +  + H+PVQSGSDR+L  M R+++   +R
Sbjct: 221 RFMVRLGMMEPLELSRIIDRLLDVVKSDWRVYRFFHVPVQSGSDRVLMLMRRKYSVDLFR 280

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
            I+ RIR+  PD  +++D IVGFPGETD+DF A++ L++++G  +    +YS R  T  +
Sbjct: 281 DIVKRIRNAFPDATVATDIIVGFPGETDEDFWASVRLIEELGIDKVNLARYSRRPFTEAA 340

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQ 436
            M EQV E VK ER            +  N   +G+ +  ++ +   +    V RS   +
Sbjct: 341 YM-EQVPEQVKKERSKIATDVFNRVALERNKTFIGREMWGIVSEVDFKGENYVVRSYNYK 399

Query: 437 SVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            + +  +  +IG  ++V++TD     L+G+L+
Sbjct: 400 PIAV--RKADIGAFVRVKVTDATSQRLFGQLL 429


>gi|300727098|ref|ZP_07060517.1| conserved hypothetical protein [Prevotella bryantii B14]
 gi|299775642|gb|EFI72233.1| conserved hypothetical protein [Prevotella bryantii B14]
          Length = 459

 Score =  319 bits (817), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 123/457 (26%), Positives = 203/457 (44%), Gaps = 31/457 (6%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           + GC++N  ++     M    G       + AD+ ++NTC + E A  K    + R+   
Sbjct: 16  TLGCKLNFSETSTFGKMLQDMGVHAAKKGEKADICIINTCSVTEMADHKCRQQIHRM--- 72

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
               ++E     VVV GC AQ E E++  +   V++V+G      L + L  A  G+   
Sbjct: 73  ----VRENPGSFVVVTGCYAQLESEKV-SKIDGVDLVLGSNEKANLIQYLNDAFTGQLTS 127

Query: 151 DTDYSVEDKFE-------------RLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197
           D   +  +  +              +       +R      FL +Q+GC+ FCT+C +PY
Sbjct: 128 DMSVNRSESTDTEHLHSYHSVRTKDIKTFQPSCSRGNRTRYFLKVQDGCNYFCTYCTIPY 187

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257
            RG   + S+  +V +A +  + G  EI L G N+    G   +    +F DL+ +L ++
Sbjct: 188 ARGFSRNPSIVSLVKQAEEAAEEGGKEIVLTGVNI----GDFGETTNESFLDLVKALDQV 243

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
           +G+ R R ++  P    D LI+        MP+ H+P+QSGSD +LK M+RR+ +  +  
Sbjct: 244 QGIQRFRISSLEPDLCDDELIEYCSTSRAFMPHFHIPLQSGSDEVLKLMHRRYDSALFAH 303

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
            I  I+   PD  I  D +VG  GE  + F      ++ +   Q   F YS R GT   +
Sbjct: 304 KIKLIKKFMPDAFIGVDVMVGCRGEKPEYFEECYRFLESLPVTQLHVFPYSERPGTSALS 363

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQS 437
           +   VD+  K  R+  L     ++   F    +G   EVL EK    K  + G +     
Sbjct: 364 IPYVVDDKEKKRRVKELLALSDKKTQDFYSNYIGTEAEVLFEKSAVGKA-MHGFTKNYIR 422

Query: 438 VVLN---SKNHNIGDIIKVRITD--VKISTLYGELVV 469
           V L+   +K      +IKVR+ D     + L  E++ 
Sbjct: 423 VELSPALAKEDFDNQLIKVRLGDFNHDKTALKAEILA 459


>gi|154491690|ref|ZP_02031316.1| hypothetical protein PARMER_01301 [Parabacteroides merdae ATCC
           43184]
 gi|154087931|gb|EDN86976.1| hypothetical protein PARMER_01301 [Parabacteroides merdae ATCC
           43184]
          Length = 440

 Score =  319 bits (817), Expect = 8e-85,   Method: Composition-based stats.
 Identities = 121/438 (27%), Positives = 204/438 (46%), Gaps = 17/438 (3%)

Query: 17  IVDQCIVPQRFF-VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREK 75
           ++D+ +   +     + GC++N  ++  +  +   QG  +    + AD+ V+NTC + E 
Sbjct: 1   MIDKTVFENKIAAYYTLGCKLNFAETSTIGKVLAEQGVRKARPGEKADICVVNTCSVTEL 60

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135
           A +K    + RI        K+     +VV GC AQ + EE+      V++V+G +    
Sbjct: 61  ADKKCRQAIRRI-------GKQHPGAFIVVTGCYAQLKPEEV-SHIEGVDLVLGAEQKLD 112

Query: 136 LPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
           L   L+  +  +       S        S      +R R    FL +Q+GCD FC++C +
Sbjct: 113 LLMYLDDLKKREEGGAIIASRTKDIRTFSPSCSADDRTR---HFLKVQDGCDYFCSYCTI 169

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
           P+ RG   + +++ +V +A ++  NG  EI L G N+    G        TF DL+ +L 
Sbjct: 170 PFARGRSRNGTIASMVKQAEEVASNGGKEIVLTGVNI----GDFGKSTGETFIDLIRALD 225

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
           E++G+VR R ++  P  ++D  I          P+ H+P+QSGSD +LK M RR+    +
Sbjct: 226 EVEGIVRYRISSIEPNLITDEAIDFVACSRRFAPHFHIPLQSGSDEVLKLMRRRYDTILF 285

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
           R  I++I+ V P   I  D IVG  GETD  F      ++ +  +Q   F YS R GT  
Sbjct: 286 RHKIEKIKEVMPHAFIGVDVIVGTRGETDTCFEEARTFIESLDISQLHVFSYSERPGTQA 345

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWL 435
             +   VD   K  R   L      +  +F +A +GQ   VL E+  ++ G + G +   
Sbjct: 346 LKIDHVVDPKTKHARSQQLLDISDRKLHAFYEAHIGQKANVLFEQT-RKGGMMHGFTENY 404

Query: 436 QSVVLNSKNHNIGDIIKV 453
             V +   +  + +  +V
Sbjct: 405 IKVEIPYDHSLVNETRQV 422


>gi|110635718|ref|YP_675926.1| MiaB-like tRNA modifying enzyme [Mesorhizobium sp. BNC1]
 gi|110286702|gb|ABG64761.1| MiaB-like tRNA modifying enzyme [Chelativorans sp. BNC1]
          Length = 426

 Score =  319 bits (817), Expect = 8e-85,   Method: Composition-based stats.
 Identities = 122/444 (27%), Positives = 199/444 (44%), Gaps = 24/444 (5%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
             V ++GC++N Y+S  +     + G     S  +   +++NTC +  +A  +    +  
Sbjct: 3   VDVLTFGCRLNAYESEVIRREAEAAGL----SALEGGAVIVNTCAVTAEAVRQARQAI-- 56

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
                    +E  D  ++V GC AQ E          V++V+G +   +         FG
Sbjct: 57  -----RRARRENPDARIIVTGCAAQTEPGT-FGSMEEVDLVLGNEEKLKAHSYRALPDFG 110

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRG-VTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
               +    V D  E         +   G   AF+ +Q GCD  CTFC++PY RG   S 
Sbjct: 111 VNQFEKV-RVNDIMEVRETASHMVDAIEGRARAFVQVQNGCDHRCTFCIIPYGRGNSRSV 169

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            +  VVD+ R+L++NG  E+ L G ++ ++ G  L G       +   L+++  L RLR 
Sbjct: 170 PMGAVVDQVRRLVENGYAEVVLTGVDLTSF-GADLPGSPRLGKLVRTILAQVPDLKRLRL 228

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
           ++    +    L++A  +   LMP+LHL +Q+G D ILK M RRH   +  +  D +R +
Sbjct: 229 SSIDSIEADQDLMRALAEEARLMPHLHLSLQAGDDMILKRMKRRHLRADSIRFCDEVRRL 288

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
           R DI   +D I GFP ET+  F  ++ +V++ G      F +SPR GTP S M  Q+  N
Sbjct: 289 RTDIVFGADIIAGFPTETEAMFENSLRIVEECGLTHLHVFPFSPRKGTPASRMP-QLPRN 347

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445
              ER   L+            +  G    VL+E+ G      +GR+     V +     
Sbjct: 348 TVKERAARLRAAGDAAYARHLASLEGTRQRVLVEREG------LGRTEGFTLVAVEGG-- 399

Query: 446 NIGDIIKVRITDVKISTLYGELVV 469
             G+I++  IT      L    ++
Sbjct: 400 KPGEIVESLITGHDGERLTATPLL 423


>gi|323345215|ref|ZP_08085438.1| 2-methylthioadenine synthetase [Prevotella oralis ATCC 33269]
 gi|323093329|gb|EFZ35907.1| 2-methylthioadenine synthetase [Prevotella oralis ATCC 33269]
          Length = 452

 Score =  319 bits (817), Expect = 8e-85,   Method: Composition-based stats.
 Identities = 116/442 (26%), Positives = 193/442 (43%), Gaps = 24/442 (5%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++    + GC++N  ++     +    G       + AD+ ++NTC + E A  K    +
Sbjct: 10  KKAVYYTLGCKLNFSETSTFGKLLQEYGVTNAADGERADICLINTCSVTEVADHKCRQAI 69

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R+       +++     VVV GC AQ E E +  +   V++V+G      L + L  A 
Sbjct: 70  HRM-------VRDNPGAFVVVTGCYAQLESETV-SKIEGVDLVLGSNEKANLVQRLNDAW 121

Query: 145 FGKRVVDTDYSVEDKFERLSIVD--------GGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
             K  + +     +       V            +R      FL +Q+GC+ FCT+C +P
Sbjct: 122 LEKSTISSASGFNEHLHAFHSVKTKDIKTFAPSCSRGNRTRYFLKVQDGCNYFCTYCTIP 181

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256
           Y RG   + +++ +V++AR+ +  G  EI L G N+    G         F DL+ +L +
Sbjct: 182 YARGFSRNPTIASLVEQARQAVAEGGKEIVLTGVNI----GDFGVTTNERFIDLVKALDK 237

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           ++G+ R R ++  P  + D LI+        MP+ H+P+QSGSD +LK M+RR+    + 
Sbjct: 238 VEGVKRYRISSLEPDLLDDELIEYCARSRAFMPHFHIPLQSGSDDVLKLMHRRYDRTLFA 297

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
             I  I+   PD  I  D +VG  GE  + F    D +  +   Q   F YS R GT   
Sbjct: 298 HKIQLIKEKMPDAFIGVDVMVGSRGERPEYFEDCYDFLRSLDITQLHVFPYSERPGTAAL 357

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQ 436
           ++   V E  K  R   L +   E+  +F    +G   EVL EK    +  + G +    
Sbjct: 358 SIPYVVAEKEKKLRSKRLLQLSDEKMQAFYAKYIGTKAEVLFEKATVGRA-MHGFTKNYI 416

Query: 437 SVVLNSK---NHNIGDIIKVRI 455
            V L +          +I V +
Sbjct: 417 RVELPASLAREEYDNQLITVEL 438


>gi|15966991|ref|NP_387344.1| hypothetical protein SMc03855 [Sinorhizobium meliloti 1021]
 gi|307302459|ref|ZP_07582216.1| MiaB-like tRNA modifying enzyme [Sinorhizobium meliloti BL225C]
 gi|307316211|ref|ZP_07595655.1| MiaB-like tRNA modifying enzyme [Sinorhizobium meliloti AK83]
 gi|15076264|emb|CAC47817.1| Conserved hypothetical protein [Sinorhizobium meliloti 1021]
 gi|306898051|gb|EFN28793.1| MiaB-like tRNA modifying enzyme [Sinorhizobium meliloti AK83]
 gi|306903129|gb|EFN33719.1| MiaB-like tRNA modifying enzyme [Sinorhizobium meliloti BL225C]
          Length = 424

 Score =  319 bits (817), Expect = 8e-85,   Method: Composition-based stats.
 Identities = 121/438 (27%), Positives = 190/438 (43%), Gaps = 28/438 (6%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
             V ++GC++N Y+S  M       G          + +++NTC +  +A  +    +  
Sbjct: 4   VEVITFGCRLNTYESEVMRAEAEKAGLN--------NAVLVNTCAVTAEAVRQARQAI-- 53

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
                    +E     ++V GC AQ E E     +  V+ V+G +             FG
Sbjct: 54  -----RRARRENPHARIIVTGCAAQTEKETFAEMA-EVDAVLGNEEKLASVSYRSLPDFG 107

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRG-VTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
               +    V D     +          G V AF+ +Q GCD  CTFC++PY RG   S 
Sbjct: 108 VSA-EEKLRVNDIMSVRATAPQMVKHIDGHVRAFIQVQNGCDHRCTFCIIPYGRGNSRSV 166

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            +  VVD+AR+L ++G  EI L G +  +  G  L G           L ++  ++RLR 
Sbjct: 167 PMGAVVDQARRLAESGYREIVLTGVDATS-YGADLPGTPTLGLLAKTLLKQVPEILRLRL 225

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
           ++    +    L+    +    MP+LHL +Q G D ILK M RRH++ + R   D +R +
Sbjct: 226 SSIDSIEADGHLLDLIAEEPRFMPHLHLSLQHGDDLILKRMKRRHSSADARAFCDEVRRL 285

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
           RP I++ +D I GFP ET+  F   M L +  G A    F YSPR GTP + M  Q+D  
Sbjct: 286 RPGISLGADMIAGFPTETEPMFENAMRLAEDCGIAHLHVFPYSPRPGTPAARMP-QLDRA 344

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445
           +  ER   L+ K  E      +  +G    +L+E +G      +  +     V  ++   
Sbjct: 345 LVKERAARLRAKGAELHAGHLEGMIGSSQTILVEMNG------LAHTENFTLV--DAAGL 396

Query: 446 NIGDIIKVRITDVKISTL 463
               ++ V IT      L
Sbjct: 397 EPRSLVAVGITGHNGKHL 414


>gi|114800325|ref|YP_762198.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Hyphomonas neptunium ATCC
           15444]
 gi|114740499|gb|ABI78624.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Hyphomonas neptunium ATCC
           15444]
          Length = 425

 Score =  318 bits (816), Expect = 9e-85,   Method: Composition-based stats.
 Identities = 129/443 (29%), Positives = 203/443 (45%), Gaps = 33/443 (7%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V + GC++N Y+S  M     + G          D +++NTC +  +A       +    
Sbjct: 12  VITLGCRLNTYESEVMRRHAHAAGL--------GDAVIINTCAVTSEAVRGARQAI---- 59

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG-- 146
                  ++     ++V GC AQ + E      P V  V+G     +          G  
Sbjct: 60  ---RRAARDNPGAPILVTGCAAQTDPEAFAA-MPEVTRVIGNHDKMKAETWKPADLLGGE 115

Query: 147 -KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            K  V+   SV +    L  +DG   R R   A++ +Q GCD  CTFC++PY RG   S 
Sbjct: 116 EKIRVNDIMSVRETAAHL--IDGMEGRAR---AYVQVQNGCDHRCTFCIIPYGRGNSRSV 170

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
              +VV + R L  +G  E+ L G ++ +W G  L G     + +   L  +  L  LR 
Sbjct: 171 PAGEVVAQVRALAASGHYEVVLTGVDLTSW-GADLPGTPELGNLVQRILKLVPELRALRI 229

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
           ++    +M D LI+A  D   + PYLHL +Q G + ILK M RRH+  +  Q+ +R+R++
Sbjct: 230 SSIDAIEMDDALIEALAD-PRVAPYLHLSLQHGDNLILKRMKRRHSRDQAIQLTERLRAM 288

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
           RPDIA+ +D I GFP ET+  F  ++ L+D+ G +   +F YSPR GTP + M  Q+ + 
Sbjct: 289 RPDIALGADIIAGFPTETEAHFENSLRLIDECGLSFLHAFPYSPRPGTPAAKMP-QLAKP 347

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445
           +  +R   L+       +   +  +GQ+   LIE+          R P    V L+    
Sbjct: 348 LIKDRAARLRAAGEAALLRHFERHLGQVRLALIERD------TAARLPDFTQVKLSRAAG 401

Query: 446 NIGDIIKVRITDVKISTLYGELV 468
             G +  V+IT      L G  +
Sbjct: 402 EGGRMTPVQITGHDGKQLLGTPL 424


>gi|163737877|ref|ZP_02145293.1| MiaB-like tRNA modifying enzyme [Phaeobacter gallaeciensis BS107]
 gi|161388493|gb|EDQ12846.1| MiaB-like tRNA modifying enzyme [Phaeobacter gallaeciensis BS107]
          Length = 421

 Score =  318 bits (816), Expect = 9e-85,   Method: Composition-based stats.
 Identities = 125/450 (27%), Positives = 202/450 (44%), Gaps = 39/450 (8%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
            P+     + GC++N Y++  M+++    G +        + +V+NTC +  +A  K   
Sbjct: 4   APK---FTTLGCRLNAYETEAMKELSQQAGLQ--------NAVVVNTCAVTAEAVRKARQ 52

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            + ++R       +E  +  ++V GC AQ E E        V  V+G     +     + 
Sbjct: 53  EIRKLR-------RENPEAPIIVTGCAAQTEPETFAA-MDEVTQVIGNTEKMQAQTWQQI 104

Query: 143 AR-------FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
           A+         K  VD   SV +    L  +DG   R R   A++ +Q GCD  CTFC++
Sbjct: 105 AKGPDFIGTTEKVQVDDIMSVTETAGHL--IDGFGTRSR---AYVQVQNGCDHRCTFCII 159

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
           PY RG   S     VVD+ ++L+D G  E+ L G ++ +W G  L         ++  L 
Sbjct: 160 PYGRGNSRSVPAGVVVDQIKRLVDRGYNEVVLTGVDLTSW-GADLPATPKLGDLVMRILK 218

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
            +  L RLR ++    ++ D L++A      LMP+LHL +Q G D ILK M RRH   + 
Sbjct: 219 LVPDLPRLRISSIDSIEVDDNLMQAIATEPRLMPHLHLSLQHGDDLILKRMARRHLRDDA 278

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
            +  +  R +RP++   +D I GFP ETD  F  ++ LV          F YS R GTP 
Sbjct: 279 IRFCEEARKLRPEMTFGADIIAGFPTETDAHFENSLKLVSDCDLTWLHVFPYSKREGTPA 338

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWL 435
           + +  QV+  +  ER   L+     Q  +   A VG+  ++L+E         +GR+   
Sbjct: 339 ARIPSQVNGPLIKERAARLRAAGDAQVQTHLTAAVGKAHQILMENP------HMGRTEQF 392

Query: 436 QSVVLNSKNHNIGDIIKVRITDVKISTLYG 465
             V   +     G I+    T +  + L  
Sbjct: 393 TEVTFAAPQIE-GQIVTATPTGITGTQLTA 421


>gi|254713652|ref|ZP_05175463.1| elongator protein 3 [Brucella ceti M644/93/1]
 gi|254715994|ref|ZP_05177805.1| elongator protein 3 [Brucella ceti M13/05/1]
 gi|261217762|ref|ZP_05932043.1| conserved hypothetical protein [Brucella ceti M13/05/1]
 gi|261321390|ref|ZP_05960587.1| conserved hypothetical protein [Brucella ceti M644/93/1]
 gi|260922851|gb|EEX89419.1| conserved hypothetical protein [Brucella ceti M13/05/1]
 gi|261294080|gb|EEX97576.1| conserved hypothetical protein [Brucella ceti M644/93/1]
          Length = 427

 Score =  318 bits (816), Expect = 9e-85,   Method: Composition-based stats.
 Identities = 128/445 (28%), Positives = 208/445 (46%), Gaps = 37/445 (8%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
             + ++GC++N Y+S  M+    + G   +        I+ NTC +  +A  +    + +
Sbjct: 3   VEIVTFGCRLNTYESEVMKREADAAGLGTLKDG----AIIFNTCAVTAEAVRQARQAIRK 58

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL-----LE 141
            R       +E  D  ++V GC AQ E +        V++V+G +   +          +
Sbjct: 59  AR-------RENPDARIIVTGCAAQTEADNFAA-MGEVDLVLGNEEKLKSNSYRMLPDFD 110

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
             +F K  V+    V +    +  VD    R R   AF+ +Q GCD  CTFC++PY RG 
Sbjct: 111 VNQFEKVRVNDIMEVRETASHM--VDAIEGRAR---AFVQVQNGCDHRCTFCIIPYGRGN 165

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
             S  +  VVD+ ++L+ NG  E+ L G ++ +  G  L G       +   L+++  L 
Sbjct: 166 SRSVPMGAVVDQVKRLVGNGYAEVVLTGVDMTS-YGPDLPGNLRLGKLVKTVLAQVPDLQ 224

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           RLR ++    +  + L++A      LMP+LHL +Q+G D ILK M RRH   +  +    
Sbjct: 225 RLRLSSIDSIEADEDLMEAIASEKRLMPHLHLSLQAGDDMILKRMKRRHLRDDSIRFCQT 284

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
            R++RPDI   +D I GFP ET++ F+ ++ +V++ G      F YSPR GTP + M  Q
Sbjct: 285 ARALRPDIVFGADIIAGFPTETEEMFQNSLKIVEECGLTHLHVFPYSPREGTPAARMP-Q 343

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           V   +  ER   L+ +         +A  G    +L+EK G      V R+       ++
Sbjct: 344 VRREIVKERAARLRAEGDRAYEKHLNALHGTRQRLLVEKEG------VARTEGFTLAAVD 397

Query: 442 SKNHNIGDIIKVRITDVKISTLYGE 466
             N   G+II+ RI  V      GE
Sbjct: 398 QGNA--GEIIE-RI--VTGHD--GE 415


>gi|73667402|ref|YP_303418.1| tRNA 2-methylthioadenosine synthase [Ehrlichia canis str. Jake]
 gi|72394543|gb|AAZ68820.1| tRNA 2-methylthioadenosine synthase [Ehrlichia canis str. Jake]
          Length = 411

 Score =  318 bits (816), Expect = 9e-85,   Method: Composition-based stats.
 Identities = 122/441 (27%), Positives = 216/441 (48%), Gaps = 34/441 (7%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V ++GC++N Y+S  +++       E        D+IV+++C +  +A  +V S + ++ 
Sbjct: 4   VITFGCRLNFYESEVIKNNLRKAQLE--------DVIVIHSCAVTNEAERQVRSKIRKLY 55

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
           N          ++ ++VAGC AQ    E+    P V  V+G Q   +    +   +    
Sbjct: 56  N-------NNANVKIIVAGCAAQLNP-ELYINMPGVIKVLGNQDKLKYESYVTEGKV--- 104

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGV-TAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
                  +ED  E   IV    NR  G   A + IQ GC+  CTFCV+   RG   S ++
Sbjct: 105 ---IVSKIEDSRE---IVQNSVNRFSGKSRALIEIQNGCNHECTFCVITKARGDNRSLNI 158

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
             ++ + R  ++NG  E+   G ++ +  G  + G++   + +   LS +  L RLR ++
Sbjct: 159 EDIITKVRDCVNNGYNEVVFTGVDI-SDFGLDIYGQRVLGTMVKRVLSAVPQLRRLRLSS 217

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
               ++ D L+    +    MP+LHL +QSG++ ILK M RRH   +     ++IR+ R 
Sbjct: 218 IDVAEIEDDLVDIIVNEPRFMPHLHLSLQSGNNLILKRMKRRHNREQVIDFCNKIRNKRK 277

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
           ++A  +D IVGFP ET++ F  T+ L+++   +    F YS R GTP + M  QV + VK
Sbjct: 278 EVAFGADIIVGFPTETEEMFNDTVRLIEEANISYLHVFPYSRREGTPAARMP-QVIQEVK 336

Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNI 447
             R+  L +   ++  SF +  +     V++EK G       GR+     V   + +  +
Sbjct: 337 KRRVKYLLEFAEKRLHSFYNTLLHTKQSVIVEKSG------TGRAENFALVKFANNDVKL 390

Query: 448 GDIIKVRITDVKISTLYGELV 468
             I++V+IT V+ + L  +++
Sbjct: 391 QSIVEVKITTVEGNCLIAQVL 411


>gi|313764484|gb|EFS35848.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes
           HL013PA1]
          Length = 474

 Score =  318 bits (816), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 128/479 (26%), Positives = 204/479 (42%), Gaps = 46/479 (9%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
              + S GC  N  DS  +     + G+  V+   +A+ +V+NTC   E+A +     L 
Sbjct: 2   TVHLVSMGCARNDVDSEELAARMEAGGFRFVDDPAEAETVVVNTCGFIEQAKKDSVDTLL 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
              +LK +    G    VV  GC+A+  G E+    P  + V+G   Y  +   L     
Sbjct: 62  AAADLKGN----GITTSVVAVGCMAERYGRELAESLPEADAVLGFDDYGDIAGRLRTILD 117

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKR------------------------------- 174
           G  +             +S VD    R                                 
Sbjct: 118 GGSLETHVPRDRRTLLPISPVDRPTARAEVSVPGHGTAPDLSASVTPDSGPRATRRRLGT 177

Query: 175 GVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA 234
           G +A L +  GCD+ C FC +P+ RG  +SR ++++V+EAR L+D+GV E+ L+ +N ++
Sbjct: 178 GPSAPLKMASGCDRRCAFCAIPHFRGSYLSRPIAEIVEEARWLVDHGVKEVFLVSEN-SS 236

Query: 235 WRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP 294
             GK L G+      LL +L ++ GL  +R +   P ++   LI      D ++PY  L 
Sbjct: 237 SYGKDL-GDLRLLEKLLVNLDQVDGLEWIRVSYLQPAELRPGLIDTILATDKVVPYFDLS 295

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
            Q  S  +L+ M R   A  +  IID IRS  P+  + S+FI GFPGETD D     D +
Sbjct: 296 FQHASGPLLRRMRRFGDAESFLNIIDSIRSRCPEAGLRSNFITGFPGETDADVAVLADFL 355

Query: 355 DKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQII 414
            +     A  F YS   GT  + +   VDE+V   R   L     E      +  +G   
Sbjct: 356 QRARLDVAGVFAYSDEEGTEAAGLDGHVDEDVVTARREDLADLTDELVSQRAEDRIGTRG 415

Query: 415 EVLIEKHGKEKGKLVGRS----PWLQSVV--LNSKNHNIGDIIKVRITDVKISTLYGEL 467
            V++E+  +    ++GR+    P +   V  +++   ++GDI+ V         L    
Sbjct: 416 RVMVEEIDEA---VIGRAEHQGPEVDGCVTLVDAAAVSVGDIVDVEFVGSDGVDLVARP 471


>gi|50842489|ref|YP_055716.1| radical SAM superfamily protein [Propionibacterium acnes KPA171202]
 gi|289425326|ref|ZP_06427103.1| ribosomal protein S12 methylthiotransferase RimO [Propionibacterium
           acnes SK187]
 gi|295130566|ref|YP_003581229.1| ribosomal protein S12 methylthiotransferase RimO [Propionibacterium
           acnes SK137]
 gi|81611817|sp|Q6A908|RIMO_PROAC RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|50840091|gb|AAT82758.1| conserved protein, radical SAM superfamily protein
           [Propionibacterium acnes KPA171202]
 gi|289154304|gb|EFD02992.1| ribosomal protein S12 methylthiotransferase RimO [Propionibacterium
           acnes SK187]
 gi|291375633|gb|ADD99487.1| ribosomal protein S12 methylthiotransferase RimO [Propionibacterium
           acnes SK137]
 gi|332675406|gb|AEE72222.1| ribosomal protein S12 methylthiotransferase RimO [Propionibacterium
           acnes 266]
          Length = 481

 Score =  318 bits (816), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 128/479 (26%), Positives = 203/479 (42%), Gaps = 46/479 (9%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
              + S GC  N  DS  +     + G+  V+   +A+ +V+NTC   E+A +     L 
Sbjct: 9   TVHLVSMGCARNDVDSEELAARMEAGGFRLVDDPAEAETVVVNTCGFIEQAKKDSVDTLL 68

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
              +LK +    G    VV  GC+A+  G E+    P  + V+G   Y  +   L     
Sbjct: 69  AAADLKGN----GITTSVVAVGCMAERYGRELAESLPEADAVLGFDDYGDIAGRLRTILD 124

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKR------------------------------- 174
           G  +             +S VD    R                                 
Sbjct: 125 GGSLETHVPRDRRTLLPISPVDRPTARAEVSVPGHGTAPDLSASVTPDSGPRATRRRLGT 184

Query: 175 GVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA 234
           G +A L +  GCD+ C FC +P  RG  +SR ++++V+EAR L+D+GV E+ L+ +N ++
Sbjct: 185 GPSAPLKMASGCDRRCAFCAIPRFRGSYLSRPIAEIVEEARWLVDHGVKEVFLVSEN-SS 243

Query: 235 WRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP 294
             GK L G+      LL +L ++ GL  +R +   P ++   LI      D ++PY  L 
Sbjct: 244 SYGKDL-GDLRLLEKLLVNLDQVDGLEWIRVSYLQPAELRPGLIDTILATDKVVPYFDLS 302

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
            Q  S  +L+ M R   A  +  IID IRS  P+  + S+FI GFPGETD D     D +
Sbjct: 303 FQHASGPLLRRMRRFGDAESFLNIIDSIRSRCPEAGLRSNFITGFPGETDADVAVLADFL 362

Query: 355 DKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQII 414
            +     A  F YS   GT  + +   VDE+V   R   L     E      +  +G   
Sbjct: 363 QRARLDVAGVFAYSDEEGTEAAGLDGHVDEDVVTARREDLADLTDELVSQRAEDRIGTRG 422

Query: 415 EVLIEKHGKEKGKLVGRS----PWLQSVV--LNSKNHNIGDIIKVRITDVKISTLYGEL 467
            V++E+  +    ++GR+    P +   V  +++   ++GDI+ V         L    
Sbjct: 423 RVMVEEIDEA---VIGRAEHQGPEVDGCVTLVDAAAVSVGDIVDVEFVGSDGVDLVARP 478


>gi|259417985|ref|ZP_05741904.1| conserved hypothetical protein [Silicibacter sp. TrichCH4B]
 gi|259346891|gb|EEW58705.1| conserved hypothetical protein [Silicibacter sp. TrichCH4B]
          Length = 419

 Score =  318 bits (815), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 128/442 (28%), Positives = 205/442 (46%), Gaps = 38/442 (8%)

Query: 32  YGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLK 91
           +GC++N Y++  M  +    G E        + +V+NTC +  +A  K    + ++R   
Sbjct: 8   FGCRLNAYETEAMNPLSRQAGLE--------NAVVVNTCAVTAEAVRKARQEIRKLR--- 56

Query: 92  NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG----- 146
               ++  D  ++V GC AQ E E     S +  V+   +     PE  +R   G     
Sbjct: 57  ----RDNPDAPIIVTGCAAQTEPETFAAMSEVTQVIGNTEKM--QPETWQRMAKGPDFIG 110

Query: 147 ---KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
              K +VD   SV +    L  +DG   R R   A++ +Q GCD  CTFC++PY RG   
Sbjct: 111 TTEKVLVDDIMSVTETASHL--IDGFGTRSR---AYVQVQNGCDHRCTFCIIPYGRGNSR 165

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           S     VVD+ ++L+D G  E+ L G ++ +W G  L         ++  L  +  L RL
Sbjct: 166 SVPAGVVVDQIKRLVDRGYNEVVLTGVDLTSW-GADLPATPKLGDLVMRILKLVPDLPRL 224

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R ++    ++ + L++A      LMP+LHL +Q G D ILK M RRH   +  +  +  R
Sbjct: 225 RISSIDSIEVDENLMQAIATEPRLMPHLHLSLQHGDDLILKRMKRRHLRDDAIRFAEDAR 284

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
            +RP++   +D I GFP ET+  F  ++ LV +        F YS R GTP + +  QV+
Sbjct: 285 KLRPEMTFGADIIAGFPTETEAHFENSLKLVTECDLTWLHVFPYSKREGTPAAKIPSQVN 344

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
            NV  +R   L+ K   Q        +G+   VL+E         +GR+     V   + 
Sbjct: 345 GNVIKDRAARLRAKGDAQVAKHLSQQLGRQHNVLMENPN------MGRTEQFTEVSFATP 398

Query: 444 NHNIGDIIKVRITDVKISTLYG 465
               G +I+ RIT ++ + L  
Sbjct: 399 QIE-GALIQTRITGIQGTQLTA 419


>gi|313772133|gb|EFS38099.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes
           HL074PA1]
 gi|313792172|gb|EFS40273.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes
           HL110PA1]
 gi|313801877|gb|EFS43111.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes
           HL110PA2]
 gi|313809997|gb|EFS47718.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes
           HL083PA1]
 gi|313812971|gb|EFS50685.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes
           HL025PA1]
 gi|313816023|gb|EFS53737.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes
           HL059PA1]
 gi|313818532|gb|EFS56246.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes
           HL046PA2]
 gi|313820299|gb|EFS58013.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes
           HL036PA1]
 gi|313822893|gb|EFS60607.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes
           HL036PA2]
 gi|313827747|gb|EFS65461.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes
           HL063PA2]
 gi|313830325|gb|EFS68039.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes
           HL007PA1]
 gi|313833700|gb|EFS71414.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes
           HL056PA1]
 gi|313838703|gb|EFS76417.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes
           HL086PA1]
 gi|314925185|gb|EFS89016.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes
           HL036PA3]
 gi|314960031|gb|EFT04133.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes
           HL002PA2]
 gi|314962830|gb|EFT06930.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes
           HL082PA1]
 gi|314967803|gb|EFT11902.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes
           HL037PA1]
 gi|314973330|gb|EFT17426.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes
           HL053PA1]
 gi|314976008|gb|EFT20103.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes
           HL045PA1]
 gi|314983972|gb|EFT28064.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes
           HL005PA1]
 gi|314988155|gb|EFT32246.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes
           HL005PA2]
 gi|314989959|gb|EFT34050.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes
           HL005PA3]
 gi|315078046|gb|EFT50097.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes
           HL053PA2]
 gi|315084343|gb|EFT56319.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes
           HL027PA2]
 gi|315085685|gb|EFT57661.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes
           HL002PA3]
 gi|315096245|gb|EFT68221.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes
           HL038PA1]
 gi|315098507|gb|EFT70483.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes
           HL059PA2]
 gi|315105412|gb|EFT77388.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes
           HL030PA1]
 gi|315108356|gb|EFT80332.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes
           HL030PA2]
 gi|327326158|gb|EGE67948.1| Fe-S oxidoreductase [Propionibacterium acnes HL096PA2]
 gi|327443168|gb|EGE89822.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes
           HL013PA2]
 gi|327445955|gb|EGE92609.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes
           HL043PA2]
 gi|327448066|gb|EGE94720.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes
           HL043PA1]
 gi|327453111|gb|EGE99765.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes
           HL092PA1]
 gi|328753499|gb|EGF67115.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes
           HL020PA1]
 gi|328760620|gb|EGF74187.1| Fe-S oxidoreductase [Propionibacterium acnes HL099PA1]
          Length = 474

 Score =  318 bits (815), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 128/479 (26%), Positives = 203/479 (42%), Gaps = 46/479 (9%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
              + S GC  N  DS  +     + G+  V+   +A+ +V+NTC   E+A +     L 
Sbjct: 2   TVHLVSMGCARNDVDSEELAARMEAGGFRLVDDPAEAETVVVNTCGFIEQAKKDSVDTLL 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
              +LK +    G    VV  GC+A+  G E+    P  + V+G   Y  +   L     
Sbjct: 62  AAADLKGN----GITTSVVAVGCMAERYGRELAESLPEADAVLGFDDYGDIAGRLRTILD 117

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKR------------------------------- 174
           G  +             +S VD    R                                 
Sbjct: 118 GGSLETHVPRDRRTLLPISPVDRPTARAEVSVPGHGTAPDLSASVTPDSGPRATRRRLGT 177

Query: 175 GVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA 234
           G +A L +  GCD+ C FC +P  RG  +SR ++++V+EAR L+D+GV E+ L+ +N ++
Sbjct: 178 GPSAPLKMASGCDRRCAFCAIPRFRGSYLSRPIAEIVEEARWLVDHGVKEVFLVSEN-SS 236

Query: 235 WRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP 294
             GK L G+      LL +L ++ GL  +R +   P ++   LI      D ++PY  L 
Sbjct: 237 SYGKDL-GDLRLLEKLLVNLDQVDGLEWIRVSYLQPAELRPGLIDTILATDKVVPYFDLS 295

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
            Q  S  +L+ M R   A  +  IID IRS  P+  + S+FI GFPGETD D     D +
Sbjct: 296 FQHASGPLLRRMRRFGDAESFLNIIDSIRSRCPEAGLRSNFITGFPGETDADVAVLADFL 355

Query: 355 DKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQII 414
            +     A  F YS   GT  + +   VDE+V   R   L     E      +  +G   
Sbjct: 356 QRARLDVAGVFAYSDEEGTEAAGLDGHVDEDVVTARREDLADLTDELVSQRAEDRIGTRG 415

Query: 415 EVLIEKHGKEKGKLVGRS----PWLQSVV--LNSKNHNIGDIIKVRITDVKISTLYGEL 467
            V++E+  +    ++GR+    P +   V  +++   ++GDI+ V         L    
Sbjct: 416 RVMVEEIDEA---VIGRAEHQGPEVDGCVTLVDAAAVSVGDIVDVEFVGSDGVDLVARP 471


>gi|288801250|ref|ZP_06406705.1| 2-methylthioadenine synthetase [Prevotella sp. oral taxon 299 str.
           F0039]
 gi|288331861|gb|EFC70344.1| 2-methylthioadenine synthetase [Prevotella sp. oral taxon 299 str.
           F0039]
          Length = 447

 Score =  318 bits (814), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 118/438 (26%), Positives = 203/438 (46%), Gaps = 18/438 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +     + GC++N  ++     M    G   V   + AD+ ++NTC + E A  K    +
Sbjct: 10  KTAAYYTLGCKLNFSETSTFGKMLQGMGVRTVERGERADICLINTCSVTEVADHKCRQAI 69

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R+       ++E     V+V GC AQ E E I  +   V++V+G      L + L  A 
Sbjct: 70  NRM-------VRENPGSFVIVTGCYAQLESERI-SKMEGVDLVLGSNEKANLIQYLSDAW 121

Query: 145 FG--KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
               ++ ++       K + +       +R      FL +Q+GC  FCT+C +P+ RG  
Sbjct: 122 SNGEEKNINDSSFHSVKTKDIKTFAASCSRGNRTRYFLKVQDGCSYFCTYCTIPFARGFS 181

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            + S+S +V++A +    G  EI L G N+    G        TF DL+ +L +++G+ R
Sbjct: 182 RNPSISSLVEQAEQAAREGGKEIVLTGVNI----GDFGVSTNETFFDLIKALDKVEGIKR 237

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
            R ++  P  +SD +I+   +    MP+ HLP+QSGS+ +L+ M R++    +   + +I
Sbjct: 238 FRISSLEPDLLSDEIIEYCANSRAFMPHFHLPLQSGSNDVLRLMKRKYDRELFADKVHKI 297

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           +++ P+  I  D +VG  GE  + F    + +D +   Q   F YS R GT    +   V
Sbjct: 298 KTLIPNAFIGVDVMVGSRGEKPEFFEDCYNFLDSLDVTQLHVFPYSERRGTAALKIPYIV 357

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
           ++  K  R   L      +  +F  A +G+  +VL EK+ K K  + G +     V L +
Sbjct: 358 NDKDKKLRSKRLLDLSDTKTQAFYAAHLGKTAQVLFEKNIKGKA-MHGFTDNYIRVELPA 416

Query: 443 ---KNHNIGDIIKVRITD 457
              K      I+ VR+ D
Sbjct: 417 NLSKEEYDNQIMAVRLVD 434


>gi|195123861|ref|XP_002006420.1| GI21033 [Drosophila mojavensis]
 gi|193911488|gb|EDW10355.1| GI21033 [Drosophila mojavensis]
          Length = 554

 Score =  318 bits (814), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 126/463 (27%), Positives = 222/463 (47%), Gaps = 26/463 (5%)

Query: 12  HMVSQIVDQCIVP--QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNT 69
               + + + ++P  Q+ +VK++GC  N  DS  M     + GY   +S D+ADL +LN+
Sbjct: 59  PQPEKTIYESVIPGTQKVYVKTWGCAHNNSDSEYMAGQLAAYGYNL-SSKDEADLWLLNS 117

Query: 70  CHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG 129
           C ++  + +   + +        S ++ G    VVVAGCV Q   +    R      ++G
Sbjct: 118 CTVKNPSEDTFRNEI-------ESGMRNGKH--VVVAGCVPQGAPKSDYLRG---LSIIG 165

Query: 130 PQTYYRLPELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
            Q   R+ E++E    G  V +  +  V+ +    + +     RK  +   ++I  GC  
Sbjct: 166 VQQIDRVVEVVEETLKGHSVRLLQNKKVQGRRVAGAPLSLPKVRKNPLIEIISINSGCLN 225

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS 248
            CT+C   + RG   S   +++V+ AR+  D G CEI L  ++  A  G+ +     +  
Sbjct: 226 QCTYCKTKHARGDLASYPPAEIVERARQSFDEGCCEIWLTSEDTGA-YGRDI---GSSLP 281

Query: 249 DLLYSLSE-IKGLVRLRYTTSHPRDMSDCLIKAHG--DLDVLMPYLHLPVQSGSDRILKS 305
           +LL+ L E I     LR   ++P  + + L +         +  +LH+PVQSGSD +L  
Sbjct: 282 ELLWQLVEVIPEHCMLRVGMTNPPYILEHLEEVAKVLQHPRVYAFLHVPVQSGSDSVLGE 341

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           M R +   ++  ++D +RS  P + I++D I GFP ET++DF  TM L  K  +   F  
Sbjct: 342 MKREYCRKDFEHVVDFLRSRVPGLTIATDIICGFPTETEEDFEETMSLCKKYQFPSLFIN 401

Query: 366 KYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK 425
           ++ PR GTP + M E++  N+  +R   L                GQ+  VL+ +   +K
Sbjct: 402 QFFPRPGTPAAKM-ERIPANLVKKRTKRLTDLFY--SYEPYAGREGQVYTVLVTEISHDK 458

Query: 426 GKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
              VG +   + V+L  +++ +G  ++VRIT     ++  E++
Sbjct: 459 LHYVGHNKSYEQVLLPMRDNLLGTRVRVRITGTSKFSMMAEIL 501


>gi|299140666|ref|ZP_07033804.1| 2-methylthioadenine synthetase [Prevotella oris C735]
 gi|298577632|gb|EFI49500.1| 2-methylthioadenine synthetase [Prevotella oris C735]
          Length = 446

 Score =  318 bits (814), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 115/450 (25%), Positives = 202/450 (44%), Gaps = 19/450 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++    + GC++N  ++     M    G       ++AD+ ++NTC + + A  K    +
Sbjct: 10  KKATYYTLGCKLNFSETSTFGKMLSDMGVVTAAKGEEADICLINTCSVTDVADHKCRQAI 69

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R+       ++E     ++V GC AQ E E +  + P V++V+G      L + L  A 
Sbjct: 70  HRM-------VRENPGAFIIVTGCYAQLESERV-SKIPGVDLVLGSNEKANLIQYLNDAF 121

Query: 145 FGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             +      +     + + +       +R      FL +Q+GC+ FCT+C +PY RG   
Sbjct: 122 IDRTAGTAQHKYHAVRTKDIKTFQASCSRGNRTRYFLKVQDGCNYFCTYCTIPYARGFSR 181

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           + S++ +V +A +    G  EI L G N+    G   +     F DL+ +L +++G+ R 
Sbjct: 182 NPSIASLVAQAEEAAAEGGKEIVLTGVNI----GHFGETTHEKFIDLVKALDKVEGIKRF 237

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R ++  P  + D LI    +    MP+ H+P+QSGSD +LK M+R +    +   I+ I+
Sbjct: 238 RISSLEPDLIDDDLIAFCAESRAFMPHFHIPLQSGSDAVLKLMHRLYDTALFAHKIELIK 297

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
            + PD  I  D +VG  GE  + F      +  +   Q   F YS R GT   ++   V+
Sbjct: 298 KLMPDAFIGVDVMVGSRGEKPEYFEDCYQFLAHLPVTQLHVFPYSERPGTSALSIPYVVE 357

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN-- 441
           E  K  R   L      +   F    +G   EVL EK  + K  + G +     V L   
Sbjct: 358 EKDKKLRSKRLLALSDTKTQDFYQQFIGTEREVLFEKAPRGKA-MHGFTDNYIRVELPPS 416

Query: 442 -SKNHNIGDIIKVRITD--VKISTLYGELV 468
            ++     ++++V++ +     S L  EL+
Sbjct: 417 QARTEYDNELMRVKLGEFNYDKSALRAELI 446


>gi|307565379|ref|ZP_07627870.1| MiaB-like protein [Prevotella amnii CRIS 21A-A]
 gi|307345911|gb|EFN91257.1| MiaB-like protein [Prevotella amnii CRIS 21A-A]
          Length = 452

 Score =  318 bits (814), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 110/428 (25%), Positives = 189/428 (44%), Gaps = 19/428 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +     + GC++N  ++       ++ G       + AD++++NTC + + A  K    +
Sbjct: 10  KTAKFYTLGCKLNFSETSTFARTLYNMGVREAKKNEIADIVLINTCSVTDVADHKCRQII 69

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R+       +++     V+V GC AQ E + I      V++V+G      L + L  A 
Sbjct: 70  NRM-------VRQNPGAFVIVTGCYAQLESQTIANII-GVDLVLGSNEKANLIQYLSNAW 121

Query: 145 FG-KRVVDTDYSVEDKFERLSIVD-----GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
              +     D + +  +  +   D        +R      FL +Q+GC+ FCT+C +PY 
Sbjct: 122 NNIEEKTPIDNTQKKIYHTVKTKDITSFQDSCSRGNRTRYFLKVQDGCNYFCTYCTIPYA 181

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258
           RG   +  +  +V +A + +  G  EI L G N+    G        +F DL+ +L  +K
Sbjct: 182 RGFSRNPPIKSLVKQAEEAVAEGGREIVLTGVNI----GDFGRTTNESFLDLVKALDNVK 237

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           G+ R R ++  P  + D LI+     +  MP+ H+P+QSGSD +LK M+R +    +   
Sbjct: 238 GIERYRISSLEPDLIDDDLIEYCATSEHFMPHFHIPLQSGSDEVLKLMHRHYDRALFADK 297

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           I  I+   P+  I  D +VG  GE  + F  + + +D +   Q   F YS R GT   ++
Sbjct: 298 ILLIKERMPNAFIGVDVMVGCRGEKPEFFEDSYNFIDSLPITQLHVFPYSERPGTSALSI 357

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSV 438
              VD   K  R   L K    +  +F    +G+   VL EK  + K  + G +     V
Sbjct: 358 PYIVDPREKKHRANRLLKLSDLKTQTFYAKYIGKEANVLFEKAARGKS-MHGFTDNYIRV 416

Query: 439 VLNSKNHN 446
            L+     
Sbjct: 417 ELSPTEAK 424


>gi|302537296|ref|ZP_07289638.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Streptomyces sp. C]
 gi|302446191|gb|EFL18007.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Streptomyces sp. C]
          Length = 500

 Score =  317 bits (813), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 128/495 (25%), Positives = 202/495 (40%), Gaps = 59/495 (11%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +   + + GC  N  DS  +     + G+E V    DAD+ V+NTC   E A +     L
Sbjct: 5   RTVALVTLGCARNEVDSEELAGRLAADGWELVEDAADADVAVVNTCGFVEAAKKDSVDAL 64

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
               +LK+     G    VV  GC+A+  G+E+    P  + V+G   Y  +   L+   
Sbjct: 65  LEANDLKD----HGKTQAVVAVGCMAERYGKELAEALPEADGVLGFDDYADISNRLQTIL 120

Query: 145 FGKRVVDTDYSVEDKFERLSI--------------------------------------V 166
            G  V    ++  D+ + L I                                       
Sbjct: 121 SGGSV--EAHTPRDRRKLLPISPAERQSADVALPGHAQAAEEPAPAPADLPDGLAPASGP 178

Query: 167 DGGYNRK--RGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCE 224
                R+  +   A + +  GCD+ C+FC +P  RG  ISR  S V+ E R L + GV E
Sbjct: 179 RAPLRRRLDKSPVASVKLASGCDRRCSFCAIPSFRGSFISRRPSDVLGETRWLAEQGVKE 238

Query: 225 ITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL 284
           + L+ +N N   GK L G+      LL  L+ + G+ R+R +   P +M   LI      
Sbjct: 239 VMLVSEN-NTSYGKDL-GDIRLLETLLPELAAVDGIERVRVSYLQPAEMRPGLIDVLTST 296

Query: 285 DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETD 344
             ++PY  L  Q  +  +L++M R      + +++D IRS  P   + S+FIVGFPGE +
Sbjct: 297 PKVVPYFDLSFQHSAPDVLRAMRRFGDTDRFLELLDTIRSKAPQAGVRSNFIVGFPGEKE 356

Query: 345 DDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVS 404
            DF      +          F YS   GT  +    ++DE+  AERL  +Q+   E    
Sbjct: 357 SDFAELERFLTHARLDAIGVFGYSDEDGTEAAGYEGKLDEDTIAERLAHMQRLAEELTSQ 416

Query: 405 FNDACVGQIIEVLIE-----KHGKEKGKLVGR----SPWLQS-VVL-NSKNHNIGDIIKV 453
             +  +G+ +EVL+E        +E     GR    +P     VV  +      G I+  
Sbjct: 417 RAEERIGETLEVLVETVVPLDEAEEGEGAYGRAAHQAPETDGQVVFTDGAGLVPGRIVTA 476

Query: 454 RITDVKISTLYGELV 468
           ++       L  E +
Sbjct: 477 KVVGTLGVDLVAEPL 491


>gi|256396949|ref|YP_003118513.1| MiaB-like tRNA modifying enzyme YliG [Catenulispora acidiphila DSM
           44928]
 gi|256363175|gb|ACU76672.1| MiaB-like tRNA modifying enzyme YliG [Catenulispora acidiphila DSM
           44928]
          Length = 529

 Score =  317 bits (813), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 122/524 (23%), Positives = 202/524 (38%), Gaps = 75/524 (14%)

Query: 15  SQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIRE 74
           S         +   + + GC  N  DS  +     + G++ V   + AD+ V+NTC   E
Sbjct: 6   SPATPPASPRRTVALVTLGCARNDVDSEELAGRLAADGWDLVEDPNGADIAVVNTCGFVE 65

Query: 75  KAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYY 134
            A +     L    + K+      G   VV  GC+A+  G+++    P  + V+G   Y 
Sbjct: 66  AAKKDSIDTLIAAADAKDEGA---GPKAVVAVGCLAERYGQQLAEALPEADAVLGFDDYQ 122

Query: 135 RLPELLERARFGKR---------------------------------------------- 148
            +   L     G+R                                              
Sbjct: 123 DISARLNAILHGERPASHVPRDRRTLLPLTPVDRQAAKGGVAVPGHGDAMDVLETTGSEA 182

Query: 149 -------VVDTDYSVEDKFERLSIVDGGYNRKR---GVTAFLTIQEGCDKFCTFCVVPYT 198
                  V   +   +     ++       R+R   G +A L +  GCD+ C+FC +P  
Sbjct: 183 SDPQAAGVQTAERPDDPTLSPVAPPTRRVLRRRLDNGPSAPLKLASGCDRRCSFCAIPAF 242

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258
           RG  +SR    ++DEAR L   GV E+ L+ +N  +  GK L G+      LL  L+ I 
Sbjct: 243 RGSYLSRRPHDILDEARWLAGQGVRELVLVSENSTS-YGKDL-GDLKLLETLLPELTAID 300

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           G+  LR +   P +M   LI      + ++PY  L  Q  +  +L+ M R      + ++
Sbjct: 301 GVDWLRVSYLQPAEMRPTLIDVMASTEGVVPYFDLSFQHSAPGLLRRMRRFGGTDSFLEL 360

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           ++ IR+  P   + S+FIVGFPGET  DF      + +        F YS   GT  +  
Sbjct: 361 LEAIRTRVPHAGVRSNFIVGFPGETAADFEELETFLSQARLDAIGVFGYSDEDGTEAAGY 420

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PW 434
            +++DE+   ER+  L     E      +  VG+ I+VL+E    + G   GR+    P 
Sbjct: 421 EDKLDEDEIGERVAHLTGLAEELTAQRAEDRVGERIDVLVESVAHD-GVAEGRAAFQGPE 479

Query: 435 LQSVVL---------NSKNHNIGDIIKVRITDVKISTLYGELVV 469
           +   VL          +     G I+  ++   +   L+   + 
Sbjct: 480 VDGSVLLVPALEPGTPAVELVPGAIVPAKVVGSEGVDLHAVAIT 523


>gi|189425283|ref|YP_001952460.1| MiaB-like tRNA modifying enzyme [Geobacter lovleyi SZ]
 gi|189421542|gb|ACD95940.1| MiaB-like tRNA modifying enzyme [Geobacter lovleyi SZ]
          Length = 442

 Score =  317 bits (813), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 110/451 (24%), Positives = 209/451 (46%), Gaps = 18/451 (3%)

Query: 20  QCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEK 79
           + +  +RF V + GC++N +++  M +   + G+++V   + ADL ++N+C +  ++  +
Sbjct: 5   EPLTGKRFAVATLGCKVNQFETADMIEQMQTAGWQQVKFSEVADLYLINSCTVTARSDAE 64

Query: 80  VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIV-NVVVGPQTYYRLPE 138
               +           +      +V  GC AQ    ++L    +  ++V+G Q  +   +
Sbjct: 65  SRRLI-------RRARRTNPHAKIVATGCYAQVAPADLLNLPDLQPDLVLGNQEKH---D 114

Query: 139 LLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
           L++  + G+  +    S++            + R     AFL IQ GC+  C++C+VP  
Sbjct: 115 LVQHIKQGRHQITDLTSLKASGPLRLTSFAEHTR-----AFLQIQNGCETGCSYCIVPIA 169

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258
           RG   S    +V++   +L+ +G  E+ L G ++ A  G  L     + + L+  L +  
Sbjct: 170 RGPSRSVPPPEVLEAVSRLVASGYQEVVLTGIHMGA-YGLDLSP-PGSLTALVQQLEDQN 227

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
            + RLR  +  P +++D L+        L  +LH+P+QSGSD +L+ M R +    Y   
Sbjct: 228 VVPRLRLGSIEPNELTDELLTLFKKSSRLCHHLHIPLQSGSDSVLQRMGRGYNTSFYANR 287

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           I     + PD  I++D I GFPGET+ +F  T + V  +  A    F YS R GT  + M
Sbjct: 288 IVTAAQLLPDAFIAADLIAGFPGETEQEFSETCNFVTSLPLADLHVFPYSTRPGTKAAAM 347

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSV 438
              +   +  ER   L+    +++ +F    +G ++++L +++  + G L G S     V
Sbjct: 348 SGHLKPAIIKERAEHLRGIAADKRAAFQHRFIGSVLQILGQRYSVKTGVLTGLSRNYLEV 407

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
                   +   + V I  ++   L G L+ 
Sbjct: 408 SYQGSTQLLNQEVMVEIQALQNGLLTGRLIT 438


>gi|222150096|ref|YP_002551053.1| hypothetical protein Avi_4197 [Agrobacterium vitis S4]
 gi|221737078|gb|ACM38041.1| conserved hypothetical protein [Agrobacterium vitis S4]
          Length = 424

 Score =  317 bits (813), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 121/444 (27%), Positives = 199/444 (44%), Gaps = 38/444 (8%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
             V ++GC++N Y+S  M+      G ++         I++NTC +  +A  +    +  
Sbjct: 4   INVITFGCRLNTYESEVMKAEAEKAGLDQA--------ILVNTCAVTGEAVRQARQAI-- 53

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ------TYYRLPELL 140
                    +E     ++V GC AQ +        P V++V+G +       Y  LP+  
Sbjct: 54  -----RRARRENPQARIIVTGCAAQTDAAGFAA-MPEVDLVLGNEEKLKAEHYRALPDFG 107

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
             A    RV D     E   + +S +DG       V  FL +Q GCD  CTFC++PY RG
Sbjct: 108 VAAAEKLRVNDIMSVTETAPQMVSHIDGH------VRGFLQVQNGCDHRCTFCIIPYGRG 161

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
              S  +  VV++ARKL++NG  E+ L G +  +  G  L G+          L ++  +
Sbjct: 162 NSRSVPMGAVVEQARKLVENGYREVVLTGVDATS-YGADLPGQPSLGLLAKTLLKQVPDI 220

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
           +RLR ++    ++   L+    +    MP+LHL +Q G D ILK M RRH+  +      
Sbjct: 221 LRLRLSSIDSIEVDRHLLDLIAEEPRFMPHLHLSLQHGDDMILKRMKRRHSRADALGFAT 280

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++R +RPD +  +D I GFP ET++    +  L  +IG A    F YSPR GTP + M  
Sbjct: 281 QVRVLRPDFSFGADMIAGFPTETEEMAANSARLAQEIGIAHLHVFPYSPRPGTPAARMP- 339

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440
           Q+D  +   R   L+    +   +  +  VG   ++L+E++       +  +     V  
Sbjct: 340 QLDRALVKARAASLRAVAEQLHHAHLEHMVGSQQKLLVERNE------MAHTQDFTLV-- 391

Query: 441 NSKNHNIGDIIKVRITDVKISTLY 464
            +  H  G ++   I       L 
Sbjct: 392 AAPGHLPGALVDAVIGGHNGRHLI 415


>gi|319957782|ref|YP_004169045.1| SSU ribosomal protein s12p methylthiotransferase [Nitratifractor
           salsuginis DSM 16511]
 gi|319420186|gb|ADV47296.1| SSU ribosomal protein S12P methylthiotransferase [Nitratifractor
           salsuginis DSM 16511]
          Length = 439

 Score =  317 bits (813), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 113/454 (24%), Positives = 205/454 (45%), Gaps = 30/454 (6%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + ++  + S GC  N+ DS  M        YE  +   +AD+I++NTC   E A E+  +
Sbjct: 1   MSKKLHLVSLGCTKNLVDSEVMLGKLAD--YELSDEPAEADVIIVNTCGFIEAAKEESIA 58

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +  +        +   D L+V++GC+++   E++ +  P +++  G   Y R+ EL+ +
Sbjct: 59  TVLDLHE------RRKEDSLLVMSGCLSERYKEQLQKEMPEIDIFTGVGDYERIDELIRQ 112

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            +         Y   +K  RL              A++ I EGC++ C+FC +P  +G  
Sbjct: 113 KQS--TFSPQVYLATEKSPRL-------ITGSNYHAYIKIAEGCNQNCSFCAIPSFKGRL 163

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR+L  +V E   L   G  + + + Q+ ++  G+ L G +    DL+  + +I G+  
Sbjct: 164 QSRTLDSIVAEVSALTAKGFYDFSFISQD-SSSYGRDL-GMRDGLIDLIRHMEQIPGVRS 221

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
            R    +P   S  LI A  D  V   Y  +P+Q   DR+LK+M R     + R++++ +
Sbjct: 222 ARILYLYPSTTSFELIDAIADSPVFQTYYDMPIQHIDDRVLKTMKRGFGEAKTRELLEAM 281

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           RS      + +  I G PGE+++ FR   D ++  G+ +   F YS    T    M EQ+
Sbjct: 282 RSKE-GSFVRTSVIAGHPGESEESFRKLCDFLESFGFDRINVFAYSNEEETAAYEM-EQL 339

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGR----SPWLQS 437
            E V   R   L +  +  + +  +  +G+   + I+   +E    L  R    +P +  
Sbjct: 340 PEEVITRRTEILGEIAQRSRDASLERMIGRRCRLAIDGPSQEHEYLLSARPLLWAPEIDG 399

Query: 438 VVLNSK----NHNIGDIIKVRITDVKISTLYGEL 467
            VL +     +  IG + + +IT+     L   L
Sbjct: 400 EVLVNDTNDLDVKIGGLYQGKITEKAGEYLLASL 433


>gi|327330227|gb|EGE71976.1| Fe-S oxidoreductase [Propionibacterium acnes HL097PA1]
          Length = 474

 Score =  317 bits (813), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 129/479 (26%), Positives = 202/479 (42%), Gaps = 46/479 (9%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
              + S GC  N  DS  +     + G+  V+   +A+ +V+NTC   E+A +     L 
Sbjct: 2   TVHLVSMGCARNDVDSEELAARMEAGGFRLVDDPAEAETVVVNTCGFIEQAKKDSVDTLL 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
              +LK      G    VV  GC+A+  G E+    P  + V+G   Y  +   L     
Sbjct: 62  AAADLKG----NGITTSVVAVGCMAERYGRELAESLPEADAVLGFDDYGDIAGRLRTILD 117

Query: 146 G--------------------------KRVVDTDYSVEDKFERLSIVDGGYNRKR----- 174
           G                            V    +     F      D G    R     
Sbjct: 118 GGSLETHVPRDRRTLLPISPVNRPTARAEVSVPGHGTAPDFSASVTPDSGPRATRRRLGT 177

Query: 175 GVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA 234
           G +A L +  GCD+ C FC +P  RG  +SR ++++V+EAR L+D+GV E+ L+ +N ++
Sbjct: 178 GPSAPLKMASGCDRRCAFCAIPRFRGSYLSRPIAEIVEEARWLVDHGVKEVFLVSEN-SS 236

Query: 235 WRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP 294
             GK L G+      LL +L ++ GL  +R +   P ++   LI      D ++PY  L 
Sbjct: 237 SYGKDL-GDLRLLEKLLVNLDQVDGLEWIRVSYLQPAELRPGLIDTILATDKVVPYFDLS 295

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
            Q  S  +L+ M R   A  +  IID IRS  P+  + S+FI GFPGETD D     D +
Sbjct: 296 FQHASGPLLRRMRRFGDAESFLNIIDSIRSRCPEAGLRSNFITGFPGETDADVAVLADFL 355

Query: 355 DKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQII 414
            +     A  F YS   GT  + +   VDE+V   R   L     E      +  +G   
Sbjct: 356 QRARLDVAGVFAYSDEEGTEAAGLDGHVDEDVVTARREDLADLTDELVSQRAEDRIGTRG 415

Query: 415 EVLIEKHGKEKGKLVGRS----PWLQSVV--LNSKNHNIGDIIKVRITDVKISTLYGEL 467
            V++E+  +    ++GR+    P +   V  +++   ++GDI+ V         L    
Sbjct: 416 RVMVEEIDEA---VIGRAEHQGPEVDGCVTLVDAAAVSVGDIVDVEFVGSDGVDLVARP 471


>gi|315185501|gb|EFU19271.1| RNA modification enzyme, MiaB family [Spirochaeta thermophila DSM
           6578]
          Length = 442

 Score =  317 bits (813), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 116/433 (26%), Positives = 196/433 (45%), Gaps = 27/433 (6%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           F+++  GC  N  D+  +  +    G+E V    +ADLIV+NTC     A E+       
Sbjct: 4   FYLEPLGCAKNQVDAEVIISLLLDAGWELVEDPAEADLIVVNTCGFIRDAKEESLETAFL 63

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
            R           D  +++ GC+AQ  G E+      V+ V+G      + +   +   G
Sbjct: 64  FRE-------RFPDKRILLTGCLAQRYGRELGEGMEEVDGVLGNADLSAVVDAARQVMEG 116

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           +RVV T  +      R + V          +A++ + EGCD  C++C +P  RG   SR 
Sbjct: 117 RRVVWTPQAR-----RPAHVRRKRLLSFPGSAYVKVAEGCDNRCSYCAIPLIRGRFWSRP 171

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
             ++V E + L+  G+ E+ L+ Q++ +  GK   G   + S LL  + E++G   +R  
Sbjct: 172 EEEIVQEVKGLLGEGIREVNLVAQDLGS-YGKERGG---SLSGLLERILELQGDFWVRLL 227

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
             HP      +++  G    L+PY+ LP Q  S R+L+ M RR  A  Y +++  +R   
Sbjct: 228 YIHPDHFPWEILRLMGQDRRLLPYVDLPFQHVSARLLRRMGRRGDAERYAELVHALRDSL 287

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM------LE 380
           PD+ + S F++GFPGE ++D  A    ++++    A  F YSP  GTP            
Sbjct: 288 PDVVVRSTFLLGFPGEEEEDLDALARFLEEVRLDWAGFFVYSPEEGTPAEAWHREEGRKG 347

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQ 436
           +V       R   L++          +  VG+  EVL+E+  + +   + RS    P + 
Sbjct: 348 RVRLERAERRKEDLERLQEGITGERLERWVGRECEVLVEERIEGEDMALARSAFQAPEVD 407

Query: 437 S-VVLNSKNHNIG 448
             VV++ +    G
Sbjct: 408 GLVVVHGEGLEPG 420


>gi|17986416|ref|NP_539050.1| Fe-S oxidoreductase [Brucella melitensis bv. 1 str. 16M]
 gi|17982010|gb|AAL51314.1| fe-s oxidoreductase [Brucella melitensis bv. 1 str. 16M]
          Length = 447

 Score =  317 bits (812), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 125/441 (28%), Positives = 202/441 (45%), Gaps = 29/441 (6%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
             + ++GC++N Y+S  M+    + G   +        I+ NTC +  +A  +    + +
Sbjct: 23  VEIVTFGCRLNTYESEVMKREADAAGLGTLKDG----AIIFNTCAVTAEAVRQARQAIRK 78

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
            R       +E  D  ++V GC AQ E +        V++V+G +   +         FG
Sbjct: 79  AR-------RENPDARIIVTGCAAQTEADNFAA-MGEVDLVLGNEEKLKSNSYRMLPDFG 130

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRG-VTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
               +    V D  E         +   G   AF+ +Q GCD  CTFC++PY RG   S 
Sbjct: 131 VNQFEKVR-VNDIMEVRETASHMVDAIEGRARAFVQVQNGCDHRCTFCIIPYGRGNSRSV 189

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            +  VVD+ ++L+ NG  E+ L G ++ +  G  L         +   L+++  L RLR 
Sbjct: 190 PMGAVVDQVKRLVGNGYAEVVLTGVDMTS-YGPDLPSNLRLGKLVKTVLAQVPDLQRLRL 248

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
           ++    +  + L++A      LMP+LHL +Q+G D ILK M RRH   +  +     R++
Sbjct: 249 SSIDSIEADEDLMEAIASEKRLMPHLHLSLQAGDDMILKRMKRRHLRDDSIRFCQTARAL 308

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
           RPDI   +D I GFP ET++ F+ ++ +V++ G      F YSPR GTP + M  QV   
Sbjct: 309 RPDIVFGADIIAGFPTETEEMFQNSLKIVEECGLTHLHVFPYSPREGTPAARMP-QVRRE 367

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445
           +  ER   L+ +         +A  G    +L+EK G      V R+       ++  N 
Sbjct: 368 IVKERAARLRAEGDRAYEKHLNALHGTRQRLLVEKEG------VARTEGFTLAAVDQGNA 421

Query: 446 NIGDIIKVRITDVKISTLYGE 466
             G+II+ RI  V      GE
Sbjct: 422 --GEIIE-RI--VTGHD--GE 435


>gi|325002548|ref|ZP_08123660.1| hypothetical protein PseP1_27467 [Pseudonocardia sp. P1]
          Length = 501

 Score =  317 bits (812), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 120/484 (24%), Positives = 191/484 (39%), Gaps = 43/484 (8%)

Query: 17  IVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDA-DLIVLNTCHIREK 75
           +      P+R  + + GC  N  DS  +       G+E V++   + D+I++NTC   E+
Sbjct: 1   MASPENAPRRAALLTLGCARNEVDSEELAGRLTGSGWELVDAEGGSPDVILVNTCGFVEQ 60

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135
           A +     +    ++            VV  GC+A+  G E+    P  + V+G   Y  
Sbjct: 61  AKKDSIDTVLAASDVARPA-----GAKVVAVGCLAERYGAELAADLPEADAVLGFDAYPE 115

Query: 136 LPELLERARFGKRVVDTDYSVEDKFERLSIVDG-------------------GYNRKR-- 174
           L E L     G                +S V+                    G  R R  
Sbjct: 116 LAERLGDVLGGHAPAPHVPVDRRTLLPISPVERPAATADVSVPGHDWVPDLAGIARTRLA 175

Query: 175 -GVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVN 233
            G  A L +  GCD+ C FC +P  RG  +SR  + V+ EA  L   GV E+ L+ +N  
Sbjct: 176 GGPVASLKLASGCDRRCAFCAIPSFRGSFVSRPPADVLGEAAWLASQGVRELVLVSENST 235

Query: 234 AWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHL 293
           +  GK L G      DLL  L    G+ R+R +   P ++   L+ A      + PY  L
Sbjct: 236 S-YGKDLPGGTRALVDLLPRLGSTPGVERVRVSYLQPAELRPDLLAAIATTPGIAPYFDL 294

Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
             Q  S  +L+ M R  +  ++  +  RIR + P+  I S+ IVGFPGET++D       
Sbjct: 295 SFQHASATVLRRMRRFGSRTDFLDLCTRIRELAPEAGIRSNVIVGFPGETEEDLAELEAF 354

Query: 354 VDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQI 413
           +          F YS   GT       +VD      R+  +     E      +  +G  
Sbjct: 355 LTGARLDAVGVFGYSDEDGTEAEGYDGKVDPAEVQARVARISALADELMEQRAEERIGTE 414

Query: 414 IEVLIEKHG-KEKGKLVGRS----PWLQS---VVLNSKN------HNIGDIIKVRITDVK 459
           + VL+E+    ++    GR+    P       VV  + +         GD+++ R+ D +
Sbjct: 415 VVVLVERTDADDEDDCAGRAAHQGPDADGESYVVAAADDGPDPSSLRPGDLVRCRVLDTE 474

Query: 460 ISTL 463
              L
Sbjct: 475 GVDL 478


>gi|170289680|ref|YP_001736496.1| 2-methylthioadenine synthetase [Candidatus Korarchaeum cryptofilum
           OPF8]
 gi|170173760|gb|ACB06813.1| 2-methylthioadenine synthetase [Candidatus Korarchaeum cryptofilum
           OPF8]
          Length = 432

 Score =  317 bits (812), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 118/444 (26%), Positives = 215/444 (48%), Gaps = 31/444 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           RF++++YGC MN  DS  ME +    G  RVN   +AD+IVLNTC+++    +++     
Sbjct: 2   RFYIETYGCSMNRSDSQIMEKLLEEAGLIRVNDPREADVIVLNTCNVKTPTEQRMIQRAR 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +               +VVAGC+A+++G ++   S    V+V P+   ++ E +  A  
Sbjct: 62  ELSK----------YAPLVVAGCMAKSQGYKLKDFSK---VLVAPREIDKIVEAVNSAIA 108

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G+R    ++   DK   L            +   + I EGC   CT+C+    RG   S 
Sbjct: 109 GRRAEFLEWRFIDKSSYL-------RDPLELVGIIPIAEGCMGACTYCITRLARGGLTSF 161

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
               ++  A   +  G  E+ L  ++  A  G+ +       ++L+  LS++ G  R+R 
Sbjct: 162 PKRNILRLAEHFLRKGAVELWLTSEDTAA-YGRDM---GENLANLIMDLSDLPGDFRIRV 217

Query: 266 TTSHPRDMSDCLIKAHG--DLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
               P      L +  G      +  + HLPVQSGSDR+L+ M R +T  ++  ++D IR
Sbjct: 218 GMMTPSSALPILSELIGAYRSRKVYKFFHLPVQSGSDRVLEDMGRNYTVDQFLSMVDFIR 277

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
               D++I++D IVGFP E ++DF +T+ +++++        K+  R GT  ++M  ++ 
Sbjct: 278 KELSDVSIATDIIVGFPTEDEEDFESTLAILERLKPDVVNVSKFGARPGTKAASMR-KLP 336

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
           + + + R   + + +   +   N+  +G+ +EVL+ + G++     GR+   + V L  +
Sbjct: 337 DAIVSRRSKEVNELVERIKEEVNERYLGRELEVLVSEKGEKG--FQGRTNSYKPVAL--R 392

Query: 444 NHNIGDIIKVRITDVKISTLYGEL 467
              +G    V I D + + L GE+
Sbjct: 393 EVKLGHFYLVEIVDFRANYLIGEV 416


>gi|84514983|ref|ZP_01002346.1| MiaB-like tRNA modifying enzyme [Loktanella vestfoldensis SKA53]
 gi|84511142|gb|EAQ07596.1| MiaB-like tRNA modifying enzyme [Loktanella vestfoldensis SKA53]
          Length = 422

 Score =  317 bits (812), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 121/438 (27%), Positives = 201/438 (45%), Gaps = 39/438 (8%)

Query: 33  GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92
           GC++N Y++  M+++    G +        D +++NTC +  +A  K    + ++R    
Sbjct: 15  GCRLNAYETEAMKELAAQAGVQ--------DAVIVNTCAVTAEAVRKARQDIRKLR---- 62

Query: 93  SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL-------PELLERARF 145
              ++     ++V GC AQ E +   + +  V++V+G              P+L+ +   
Sbjct: 63  ---RDHPGARIIVTGCAAQTEPDTFAKMA-EVDLVIGNTEKMDPATWARLTPDLIGQTEP 118

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            +  VD   SV +    L  +DG   R R   A++ +Q GCD  CTFC++P+ RG   S 
Sbjct: 119 VQ--VDDIMSVTETAGHL--IDGFGTRSR---AYVQVQNGCDHRCTFCIIPFGRGNSRSV 171

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
               VVD+ ++L+D G  E+ L G ++ +W G  L         ++  L  +  L RLR 
Sbjct: 172 PAGVVVDQIKRLVDRGYAEVVLTGVDLTSW-GADLPSAPKLGDLVMRILKLVPDLPRLRI 230

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
           ++    ++ D L+ A      LMP+LHL +Q G D ILK M RRH   +  +  +  R +
Sbjct: 231 SSIDSIEVDDNLLAAIATEPRLMPHLHLSLQHGDDLILKRMKRRHLRDDAIRFCETARRL 290

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
           RPD+   +D I GFP ET+D F +++ LV +        F YS R GTP + M   V+  
Sbjct: 291 RPDMTFGADIIAGFPTETEDMFASSLALVRECDLTWLHVFPYSARPGTPAARMP-AVNGA 349

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445
              +R   L+     Q  S   A +G+   +L+E         +GR+     V   +   
Sbjct: 350 AIKDRAARLRAAGDAQVSSHLAAQIGRTHHILMESP------RMGRTEQFTEVTFTTDQP 403

Query: 446 NIGDIIKVRITDVKISTL 463
               I+   IT    + L
Sbjct: 404 ES-RIVTATITGSADNRL 420


>gi|262341116|ref|YP_003283971.1| MiaB family tRNA modification enzyme: 2-methylthioadenine
           synthetase [Blattabacterium sp. (Blattella germanica)
           str. Bge]
 gi|262272453|gb|ACY40361.1| MiaB family tRNA modification enzyme: 2-methylthioadenine
           synthetase [Blattabacterium sp. (Blattella germanica)
           str. Bge]
          Length = 446

 Score =  317 bits (812), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 115/455 (25%), Positives = 208/455 (45%), Gaps = 21/455 (4%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           ++ ++    + GC++N  ++  +   F +  Y+ V     AD+ V+N+C + + A  +  
Sbjct: 1   MMKKKVAFYTMGCKLNYAETSTIARKFSNLYYQHVPFKSYADIYVINSCSVTKNAEVEFR 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             +    N       +     ++  GC AQ   +++      V++V+G    +++ + L+
Sbjct: 61  HIVRSAMN-------QNSQAFIIAIGCYAQLNSKKV-SSIVGVDLVLGSYEKFKITDYLD 112

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
                K       + + K         G        +FL IQ+GCD  C++C++P +RG 
Sbjct: 113 LELLKKSHPKIISNAKTKNTYFPSFSVG----DRTRSFLKIQDGCDYKCSYCIIPISRGA 168

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK---CTFSDLLYSLSEIK 258
             S S+  ++   R L  NGV EI L G N+    GK + GE     TF DL+ ++ +IK
Sbjct: 169 SRSESIENILKNIRLLFRNGVKEIVLTGVNIG-DYGKKIYGENRRLYTFFDLIQAIDQIK 227

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
              R+R ++  P  + +  I+        +P+ H+P+QSGS+ IL  M+RR+    Y++ 
Sbjct: 228 EKGRIRLSSIEPNLLKNECIEFLSKSKHFVPHFHIPLQSGSNDILGKMHRRYKRELYQEK 287

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           +++IR   PD  I SD IVGFPGET   F  T   + K+  +    F YSPR  T    +
Sbjct: 288 VNKIRCFIPDAYIGSDIIVGFPGETHKHFLETYHFLKKLEISSLHIFTYSPRPNTKSITL 347

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSV 438
              V + ++ +R   L+    ++   F +  V     VL EK+   +  L G +      
Sbjct: 348 QGYVSKKIQWKRNQILRNLSNKKYRFFCERQVYTKKTVLFEKNSTNQEYLYGYTENYIRT 407

Query: 439 VLNSKNHNI----GDIIKVRITDVK-ISTLYGELV 468
            +   ++N+      + +V IT +     +  E +
Sbjct: 408 KIPLNSYNLSCYRNTLQEVFITKIDQDGIMIAEPI 442


>gi|256045537|ref|ZP_05448420.1| MiaB-like tRNA modifying enzyme [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|256112265|ref|ZP_05453186.1| MiaB-like tRNA modifying enzyme [Brucella melitensis bv. 3 str.
           Ether]
 gi|260562847|ref|ZP_05833333.1| elongator protein 3 [Brucella melitensis bv. 1 str. 16M]
 gi|265991963|ref|ZP_06104520.1| conserved hypothetical protein [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|265993696|ref|ZP_06106253.1| conserved hypothetical protein [Brucella melitensis bv. 3 str.
           Ether]
 gi|260152863|gb|EEW87955.1| elongator protein 3 [Brucella melitensis bv. 1 str. 16M]
 gi|262764677|gb|EEZ10598.1| conserved hypothetical protein [Brucella melitensis bv. 3 str.
           Ether]
 gi|263003029|gb|EEZ15322.1| conserved hypothetical protein [Brucella melitensis bv. 1 str.
           Rev.1]
          Length = 427

 Score =  317 bits (812), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 125/441 (28%), Positives = 202/441 (45%), Gaps = 29/441 (6%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
             + ++GC++N Y+S  M+    + G   +        I+ NTC +  +A  +    + +
Sbjct: 3   VEIVTFGCRLNTYESEVMKREADAAGLGTLKDG----AIIFNTCAVTAEAVRQARQAIRK 58

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
            R       +E  D  ++V GC AQ E +        V++V+G +   +         FG
Sbjct: 59  AR-------RENPDARIIVTGCAAQTEADNFAA-MGEVDLVLGNEEKLKSNSYRMLPDFG 110

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRG-VTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
               +    V D  E         +   G   AF+ +Q GCD  CTFC++PY RG   S 
Sbjct: 111 VNQFEKVR-VNDIMEVRETASHMVDAIEGRARAFVQVQNGCDHRCTFCIIPYGRGNSRSV 169

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            +  VVD+ ++L+ NG  E+ L G ++ +  G  L         +   L+++  L RLR 
Sbjct: 170 PMGAVVDQVKRLVGNGYAEVVLTGVDMTS-YGPDLPSNLRLGKLVKTVLAQVPDLQRLRL 228

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
           ++    +  + L++A      LMP+LHL +Q+G D ILK M RRH   +  +     R++
Sbjct: 229 SSIDSIEADEDLMEAIASEKRLMPHLHLSLQAGDDMILKRMKRRHLRDDSIRFCQTARAL 288

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
           RPDI   +D I GFP ET++ F+ ++ +V++ G      F YSPR GTP + M  QV   
Sbjct: 289 RPDIVFGADIIAGFPTETEEMFQNSLKIVEECGLTHLHVFPYSPREGTPAARMP-QVRRE 347

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445
           +  ER   L+ +         +A  G    +L+EK G      V R+       ++  N 
Sbjct: 348 IVKERAARLRAEGDRAYEKHLNALHGTRQRLLVEKEG------VARTEGFTLAAVDQGNA 401

Query: 446 NIGDIIKVRITDVKISTLYGE 466
             G+II+ RI  V      GE
Sbjct: 402 --GEIIE-RI--VTGHD--GE 415


>gi|225853371|ref|YP_002733604.1| MiaB-like tRNA modifying enzyme [Brucella melitensis ATCC 23457]
 gi|256263147|ref|ZP_05465679.1| elongator protein 3 [Brucella melitensis bv. 2 str. 63/9]
 gi|225641736|gb|ACO01650.1| MiaB-like tRNA modifying enzyme [Brucella melitensis ATCC 23457]
 gi|263093050|gb|EEZ17200.1| elongator protein 3 [Brucella melitensis bv. 2 str. 63/9]
 gi|326409934|gb|ADZ66999.1| MiaB-like tRNA modifying enzyme [Brucella melitensis M28]
 gi|326539647|gb|ADZ87862.1| MiaB-like tRNA modifying enzyme [Brucella melitensis M5-90]
          Length = 427

 Score =  317 bits (812), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 125/441 (28%), Positives = 201/441 (45%), Gaps = 29/441 (6%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
             + ++GC++N Y+S  M     + G   +        I+ NTC +  +A  +    + +
Sbjct: 3   VEIVTFGCRLNTYESEVMRREADAAGLGTLKDG----AIIFNTCAVTAEAVRQARQAIRK 58

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
            R       +E  D  ++V GC AQ E +        V++V+G +   +         FG
Sbjct: 59  AR-------RENPDARIIVTGCAAQTEADNFAA-MGEVDLVLGNEEKLKSNSYRMLPDFG 110

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRG-VTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
               +    V D  E         +   G   AF+ +Q GCD  CTFC++PY RG   S 
Sbjct: 111 VNQFEKVR-VNDIMEVRETASHMVDAIEGRARAFVQVQNGCDHRCTFCIIPYGRGNSRSV 169

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            +  VVD+ ++L+ NG  E+ L G ++ +  G  L         +   L+++  L RLR 
Sbjct: 170 PMGAVVDQVKRLVGNGYAEVVLTGVDMTS-YGPDLPSNLRLGKLVKTVLAQVPDLQRLRL 228

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
           ++    +  + L++A      LMP+LHL +Q+G D ILK M RRH   +  +     R++
Sbjct: 229 SSIDSIEADEDLMEAIASEKRLMPHLHLSLQAGDDMILKRMKRRHLRDDSIRFCQTARAL 288

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
           RPDI   +D I GFP ET++ F+ ++ +V++ G      F YSPR GTP + M  QV   
Sbjct: 289 RPDIVFGADIIAGFPTETEEMFQNSLKIVEECGLTHLHVFPYSPREGTPAARMP-QVRRE 347

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445
           +  ER   L+ +         +A  G    +L+EK G      V R+       ++  N 
Sbjct: 348 IVKERAARLRAEGDRAYEKHLNALHGTRQRLLVEKEG------VARTEGFTLAAVDQGNA 401

Query: 446 NIGDIIKVRITDVKISTLYGE 466
             G+II+ RI  V      GE
Sbjct: 402 --GEIIE-RI--VTGHD--GE 415


>gi|239982669|ref|ZP_04705193.1| hypothetical protein SalbJ_24778 [Streptomyces albus J1074]
          Length = 472

 Score =  317 bits (812), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 122/472 (25%), Positives = 198/472 (41%), Gaps = 52/472 (11%)

Query: 40  DSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGG 99
           DS  +     + G++ V   + AD+ V+NTC   E A +     L    +LK      G 
Sbjct: 2   DSEELAGRLEADGWQLVEDAEAADVAVVNTCGFVEAAKKDSVDALLEANDLKAQ----GR 57

Query: 100 DLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDK 159
              VV  GC+A+  G+E+    P  + V+G   Y  + + L+    G   +   ++  D+
Sbjct: 58  TQAVVAVGCMAERYGKELAEALPEADGVLGFDDYADISDRLQTILGGG--IHASHTPRDR 115

Query: 160 FERLSI-----------------------------------VDGGYNRKRG--VTAFLTI 182
            + L I                                         R+ G    A + +
Sbjct: 116 RKLLPISPAERQDSAVALPGHAQEPAAAPADLPDGLAPASGPRAPLRRRLGTSPVASVKL 175

Query: 183 QEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG 242
             GCD+ C+FC +P  RG  ISR  S V+ E R L   GV EI L+ +N N   GK L G
Sbjct: 176 ASGCDRRCSFCAIPSFRGSFISRRPSDVLQETRWLAGQGVKEIMLVSEN-NTSYGKDL-G 233

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
           +      LL  L+E+ G+ R+R +   P +M   LI        + PY  L  Q  +  +
Sbjct: 234 DIRLLETLLPELAEVDGIERVRVSYLQPAEMRPGLIDVLTSTPKVAPYFDLSFQHSAPGV 293

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           L++M R      +  ++++IR+  P+  + S+FIVGFPGE++ D       +        
Sbjct: 294 LRAMRRFGDTDRFLGLLEQIRAKAPEAGVRSNFIVGFPGESEADVAELERFLTGARLDAI 353

Query: 363 FSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422
             F YS   GT  +    ++ E   AERL  + +   E      D  VG+ +EVL+E   
Sbjct: 354 GVFGYSDEDGTEAAGYEGKLPEEEVAERLARVSRLAEELVSQRADERVGETVEVLVESVD 413

Query: 423 KEKGKLVGR----SPWLQSVVL--NSKNHNIGDIIKVRITDVKISTLYGELV 468
           +E+G  VGR    +P     +L  +  +   G ++  ++   +   L  E +
Sbjct: 414 EEEG-AVGRAAHQAPETDGQILFTSGADLTPGRMVVAKVVGTEGVDLVAEPL 464


>gi|330444283|ref|YP_004377269.1| MiaB-like tRNA modifying protein [Chlamydophila pecorum E58]
 gi|328807393|gb|AEB41566.1| MiaB-like tRNA modifying enzyme [Chlamydophila pecorum E58]
          Length = 425

 Score =  316 bits (811), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 120/448 (26%), Positives = 208/448 (46%), Gaps = 34/448 (7%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD-DADLIVLNTCHIREKAAEKVY 81
             + F +   GC++N Y+     D     G E +   +  AD+ ++NTC +   A     
Sbjct: 10  AKKTFKLVCLGCRVNQYEVQGYRDQLTLLGCEEITDPETPADICIVNTCAVTSSAESSGR 69

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             + ++        ++  +  +VV GC+ +A+            +V   + +  + +L  
Sbjct: 70  HAIRQM-------CRQNPEARLVVTGCLGEADKSFFASLGRECLLVPNKEKHLLIEKLFP 122

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           +             +ED  E       G +R     AF+ +Q+GC+ FC++C++PY RG 
Sbjct: 123 Q-------------MEDFPEFCIRSFEGKSR-----AFIKVQDGCNSFCSYCIIPYLRGR 164

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
            +SR   ++++E R LI+ G  E+ + G NV          E  + + LL  +  + GL 
Sbjct: 165 SVSRPSQEILEEIRTLIEGGYREVVISGINVG-----DYSHEGDSLASLLRKIDMLPGLE 219

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           RLR ++  P D+ + L +A        P  HL +QSGS+ ILK MNR++T   +   ++R
Sbjct: 220 RLRVSSIDPDDVQEDLCQALVSCKHTCPSSHLVLQSGSNAILKRMNRKYTRNMFLDCVER 279

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +RS  P    ++D IVGFPGE+D DF  T+ +V+ +G+ +   F YSPR  T   +   Q
Sbjct: 280 LRSFDPHYTFTTDVIVGFPGESDQDFEDTVKIVEDVGFIKVHIFPYSPRPRTRAYSYEGQ 339

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           V   + AER   L +  +       +  +G    VL+E+     G+  G +P+   V   
Sbjct: 340 VPAQILAERKKYLAEVAKTVAKKEMEKRLGTRTTVLVEQVS--CGEACGHTPYFDMVRFP 397

Query: 442 -SKNHNIGDIIKVRITDVKISTLYGELV 468
                +I  ++ V + +VK  +  GE V
Sbjct: 398 IKGEVSINTMVPVVLREVKEESFSGEQV 425


>gi|319793990|ref|YP_004155630.1| miab-like tRNA modifying enzyme ylig [Variovorax paradoxus EPS]
 gi|315596453|gb|ADU37519.1| MiaB-like tRNA modifying enzyme YliG [Variovorax paradoxus EPS]
          Length = 468

 Score =  316 bits (811), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 116/484 (23%), Positives = 203/484 (41%), Gaps = 49/484 (10%)

Query: 11  AHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC 70
           + + S          +    S GC   + DS  +     ++GY+   + + ADL+++NTC
Sbjct: 2   SEVASPERTTTSTAPKVGFVSLGCPKALTDSELILTRLSAEGYQTSKTFEGADLVIVNTC 61

Query: 71  HIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEE----ILRRSPIVNV 126
              + A ++    +G              +  V+V GC+    G++    + +  P V  
Sbjct: 62  GFIDDAVKESLDTIGEALA---------ENGRVIVTGCLGAKTGDQGGNLVRQMHPSVLA 112

Query: 127 VVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGC 186
           V GP     + + +            D          +    G        A+L I EGC
Sbjct: 113 VTGPHATQEVMDAVHANLPKPHDPFIDLVPN------TFGIAGLKLTPRHYAYLKISEGC 166

Query: 187 DKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGL 240
           +  CTFC++P  RG  +SR +  V+ EA+ L + GV E+ ++ Q+ +A+      R    
Sbjct: 167 NHRCTFCIIPSMRGDLVSRPVGDVLGEAKALFEGGVKELLVISQDTSAYGVDVKYRTGFW 226

Query: 241 DGE--KCTFSDLLYSLSEI----KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP 294
           DG+  K    +L+ +L EI       VRL Y   +P       + A G    ++PYL +P
Sbjct: 227 DGKPVKTRMLELVRTLGEIAEPYGAWVRLHYVYPYPSVDEIIPLMASGQ---VLPYLDVP 283

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           +Q     +LK M R  +  +  + + R R V P++ I S FI GFPGET+ +F   +D +
Sbjct: 284 LQHSHPDVLKRMKRPASGEKNLERLARWREVCPELVIRSTFIAGFPGETEQEFGHLLDFI 343

Query: 355 DKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQII 414
            +    +A  F YSP  G   +++   + E  +  R     +      ++     +G  +
Sbjct: 344 REAEIDRAGCFAYSPVEGATANDIPGMLPEAEREARRARFMEVAEAVSIAKLQRRIGATM 403

Query: 415 EVLIE---KHGKEKGKLVGRS----PWLQSVV------LNSKNHNIGDIIKVRITDVKIS 461
           +VL++     G++ G  VGR+    P +   V        SK   +G+  + RI   +  
Sbjct: 404 QVLVDSAPGMGRKGG--VGRTYADAPEIDGTVRLLPPEKISKTLKVGEFTRARIVGAEGH 461

Query: 462 TLYG 465
            L  
Sbjct: 462 DLIA 465


>gi|315080671|gb|EFT52647.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes
           HL078PA1]
          Length = 474

 Score =  316 bits (810), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 128/479 (26%), Positives = 203/479 (42%), Gaps = 46/479 (9%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
              + S GC  N  DS  +     + G+  V+   +A+ +V+NTC   E+A +     L 
Sbjct: 2   TVHLVSMGCARNDVDSEELAARMEAGGFRLVDDPAEAETVVVNTCGFIEQAKKDSVDTLL 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
              +LK +    G    VV  GC+A+  G E+    P  + V+G   Y  +   L     
Sbjct: 62  AAADLKGN----GITTSVVAVGCMAERYGRELAESLPEADAVLGFDDYGDIAGRLRTILD 117

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKR------------------------------- 174
           G  +             +S VD    R                                 
Sbjct: 118 GGSLETHVPRDRRTLLPISPVDRPTARAEVSVPGHGTAPDLSASVTPDSGPRATRRRLGT 177

Query: 175 GVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA 234
           G +A L +  GCD+ C FC +P  RG  +SR ++++V+EAR L+D+GV E+ L+ +N ++
Sbjct: 178 GPSAPLKMASGCDRRCAFCAIPRFRGSYLSRPIAEIVEEARWLVDHGVKEVFLVSEN-SS 236

Query: 235 WRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP 294
             GK L G+      LL +L ++ GL  +R +   P ++   LI      D ++PY  L 
Sbjct: 237 SYGKDL-GDLRLLEKLLVNLDQVDGLEWIRVSYLQPAELRPGLIDTILATDKVVPYFDLS 295

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
            Q  S  +L+ M R   A  +  IID IRS  P+  + S+FI GFPGETD D     D +
Sbjct: 296 FQHASGPLLRRMRRFGDAESFLNIIDSIRSRCPEAGLRSNFITGFPGETDADVAVLADFL 355

Query: 355 DKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQII 414
            +     A  F YS   GT  + +   VDE+V   R   L     E      +  +G   
Sbjct: 356 QRARLDVAGVFAYSDEEGTEAAGLDGHVDEDVVTARREDLADLTDELVSQRAEDRIGTPG 415

Query: 415 EVLIEKHGKEKGKLVGRS----PWLQSVV--LNSKNHNIGDIIKVRITDVKISTLYGEL 467
            V++E+  +    ++GR+    P +   V  +++   ++GDI+ V         L    
Sbjct: 416 RVMVEEIDEA---VIGRAEHQGPEVDGCVTLVDAAAVSVGDIVDVEFVGSDGVDLVARP 471


>gi|262039459|ref|ZP_06012763.1| protein YqeV [Leptotrichia goodfellowii F0264]
 gi|261746526|gb|EEY34061.1| protein YqeV [Leptotrichia goodfellowii F0264]
          Length = 453

 Score =  316 bits (810), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 115/451 (25%), Positives = 218/451 (48%), Gaps = 25/451 (5%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +     + GC++N Y++  +   F    Y+ V+  + AD+ ++NTC +   A +K    L
Sbjct: 21  RTVAFYTLGCKVNQYETEIIRKDFLDHNYKEVDFDEKADVYIVNTCTVTNVADKKNRKML 80

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R +N          D LVV  GC AQ   +++ +    ++ ++G      +  ++ +  
Sbjct: 81  RRAKN-------TNPDSLVVATGCYAQTNLDDL-KEMKEIDFIIGNSKKENVFNIINKNV 132

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
              +V +     E    + +I+      +    AF+ IQ+GC KFC++C +PY RG+  S
Sbjct: 133 SHYQVDNIFDEKEYSSNKYTIL------REKARAFVKIQDGCSKFCSYCKIPYARGLSRS 186

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R+   V++E   L + G  E+ L G N+ +  G  L+  K  F  LL  +  +K + R+R
Sbjct: 187 RATEHVLEEINYLGEQGYKEVVLTGINM-SEYGLDLEP-KTDFDTLLEKILAVKSVERVR 244

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
            ++ +P  ++D  +    +   LMP+LH+ VQ+  D+IL+ M R + A      +++++ 
Sbjct: 245 VSSVYPDTITDKFLGMLKNNPKLMPHLHVSVQTLDDKILRLMRRNYKAEFVVNTLEKVKR 304

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             P++A+++D IVGFP E +++F  TM  +D +G+A    F YS R  T    +  ++D 
Sbjct: 305 EVPEVALTADIIVGFPQEEEENFANTMKNLDSLGFADLHVFPYSDREKTTAMLLDGKIDA 364

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK- 443
             K  R+  +++    +   F    VG    V IE+  ++K    G +     V ++ K 
Sbjct: 365 VEKKRRVKKVEELNNIKYAEFRKKTVGSKQRVYIEEIVEDKA--FGYTENYLKVFIDLKK 422

Query: 444 ------NHNIGDIIKVRITDVKISTLYGELV 468
                 +  + D++  +I D     L G+++
Sbjct: 423 GEKNNLDVKVSDLVNTKIVDFDGILLEGDII 453


>gi|145220029|ref|YP_001130738.1| MiaB-like tRNA modifying enzyme YliG [Prosthecochloris vibrioformis
           DSM 265]
 gi|238066480|sp|A4SFH7|RIMO_PROVI RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|145206193|gb|ABP37236.1| SSU ribosomal protein S12P methylthiotransferase [Chlorobium
           phaeovibrioides DSM 265]
          Length = 434

 Score =  316 bits (810), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 120/450 (26%), Positives = 187/450 (41%), Gaps = 33/450 (7%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R F+ S GC  N  DS R+     + G     S  DA+ I++NTC     A E+  +   
Sbjct: 7   RVFLLSLGCSKNTVDSERLMAQAEAAGVVFTESASDAETIIINTCGFIADAKEESINETL 66

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                K S    G    + V GC+ +    E+    P V+   G +    +   +     
Sbjct: 67  AAITEKES----GRVRKIFVMGCLPELYRSELQTELPEVDGFFGTRELPAILTAIGA--- 119

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                           R  +         G T+FL I EGC + C+FC +P  RG  IS+
Sbjct: 120 --------------RYRSELHLHRSLTAPGHTSFLKISEGCSRSCSFCSIPRIRGPYISQ 165

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            L Q++ EAR L + GV E+ ++ Q++    G  L G +   +DLL  LS++     +R 
Sbjct: 166 PLDQLLREARLLQEKGVQELNIIAQDIT-LYGVDLYG-RQMLNDLLLRLSDM-AFHWIRL 222

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
             ++P +    +I+       +  YL LP+Q  +DRIL+SMNR  T      +I+ IR  
Sbjct: 223 LYAYPLNFPLEVIETMSQRGNICNYLDLPLQHCNDRILRSMNRGITKEGELALIEAIRQK 282

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            PDI + +  I G+PGET  +F   ++    + + +   F Y     +P   + + V E 
Sbjct: 283 NPDIRLRTTMIAGYPGETRQEFEELLEFAATVRFDRLGCFSYCHEEFSPAFALEDSVPEE 342

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV-----L 440
            K  R   L +         N    G+ I V I++   E+    GR+ W    V     L
Sbjct: 343 EKQSRTAELMELQEGISEEKNKRLEGREIAVCIDRI--EENTAWGRTEWDAPEVDNECSL 400

Query: 441 NSKNHNI--GDIIKVRITDVKISTLYGELV 468
               H I  G     RI       L+G ++
Sbjct: 401 EGAGHTIAPGSFCLARIDGSSPYELFGTVL 430


>gi|313807488|gb|EFS45975.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes
           HL087PA2]
          Length = 474

 Score =  316 bits (810), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 128/479 (26%), Positives = 203/479 (42%), Gaps = 46/479 (9%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
              + S GC  N  DS  +     + G+  V+   +A+ +V+NTC   E+A +     L 
Sbjct: 2   TVHLVSMGCARNDVDSEELAARMEAGGFRLVDDPAEAETVVVNTCGFIEQAKKDSVDTLL 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
              +LK +    G    VV  GC+A+  G E+    P  + V+G   Y  +   L     
Sbjct: 62  AAADLKGN----GITTSVVAVGCMAERYGRELAESLPEADAVLGFDDYGDIAGRLRTILD 117

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKR------------------------------- 174
           G  +             +S VD    R                                 
Sbjct: 118 GGSLETHVPRDRRTLLPISPVDRPTARAEVSVPGHGTAPDLSASVTPDSGPRATRRRLGT 177

Query: 175 GVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA 234
           G +A L +  GCD+ C FC +P  RG  +SR ++++V+EAR L+D+GV E+ L+ +N ++
Sbjct: 178 GPSAPLKMASGCDRRCAFCAIPRFRGSYLSRPIAEIVEEARWLVDHGVKEVFLVSEN-SS 236

Query: 235 WRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP 294
             GK L G+      LL +L ++ GL  +R +   P ++   LI      D ++PY  L 
Sbjct: 237 SYGKDL-GDLRLLEKLLVNLDQVDGLEWIRVSYLQPAELRPGLIDTILATDKVVPYFDLS 295

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
            Q  S  +L+ M R   A  +  IID IRS  P+  + S+FI GFPGETD D     D +
Sbjct: 296 FQHASGPLLRRMRRFGDAESFLNIIDSIRSRCPEAGLRSNFITGFPGETDADVAVLADFL 355

Query: 355 DKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQII 414
            +     A  F YS   GT  + +   VDE+V   R   L     E      +  +G   
Sbjct: 356 QRARLDVAGVFAYSDEEGTEAAGLDGHVDEDVVTARREDLADLTDELVSQRAEDRIGTRG 415

Query: 415 EVLIEKHGKEKGKLVGRS----PWLQSVV--LNSKNHNIGDIIKVRITDVKISTLYGEL 467
            V++E+  +    ++GR+    P +   V  +++   ++GDI+ V         L    
Sbjct: 416 RVMVEEIDEA---VIGRAEHQGPEVDGCVTLVDAAAVSVGDIVDVEFVGSDCVDLVARP 471


>gi|297527331|ref|YP_003669355.1| RNA modification enzyme, MiaB family [Staphylothermus hellenicus
           DSM 12710]
 gi|297256247|gb|ADI32456.1| RNA modification enzyme, MiaB family [Staphylothermus hellenicus
           DSM 12710]
          Length = 429

 Score =  316 bits (810), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 128/455 (28%), Positives = 234/455 (51%), Gaps = 37/455 (8%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + +R ++++YGC +N  D   M+ +  S+G+  VN + +AD I++NTC +R     K+  
Sbjct: 1   MARRVYIETYGCALNRGDEYIMKTVLVSRGHRLVNEIAEADTIIINTCTVRYDTELKMIK 60

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +  +  + + + K      ++VAGC+A+A+  +I + +P  ++V  PQ   ++   +E 
Sbjct: 61  RIKELYKIASEQNK-----KLIVAGCMAKAQPYKIHKIAPRASLV-SPQNASKIWIAVES 114

Query: 143 ARF-----GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197
            +      G+R  +   +  DK                  A+L IQEGC   C+FC+V  
Sbjct: 115 DKQVFLLKGERDRNILGTHVDK----------------QIAYLPIQEGCLGNCSFCIVKN 158

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257
            R   +S  ++++ +   +L+  GV EI L GQ+  A  G  L G K     LL  L  I
Sbjct: 159 ARRQLVSYPINKIKNTVEELVGKGVVEIELTGQDT-ASYGLDLYG-KQKLPHLLEELDRI 216

Query: 258 KGLVRLRYTTSHPR---DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
           KG   +R    +P    ++ D L++       +  +LH+P+QSGSD++L+ M R++T  E
Sbjct: 217 KGNFMIRIGMMNPDTLANILDELVEIIKYSAHIYRFLHIPLQSGSDKVLRVMKRKYTVDE 276

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
           YR+II  +R   P+I+I++D IVG PGE ++DF  T+ ++ ++ + +     YS R  T 
Sbjct: 277 YREIIKTLRKKIPEISIATDIIVGHPGEEEEDFEQTLSIIKELKFERIHPAVYSIRPNTY 336

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPW 434
            +++  QV  + K  R+L L K + +  +  +   +G+I++  + ++       +GR+  
Sbjct: 337 SASLR-QVPTSDKKIRMLRLLKIIEDVGLEIHRKYLGKILDTFVTEYS---NTWIGRTLN 392

Query: 435 LQSV-VLNSKNHNIGDIIKVRITDVKISTLYGELV 468
              V + ++   N GD +K +IT+     L G +V
Sbjct: 393 YIPVIIFSNNTLNFGDHVKTQITNATFYDLRGVIV 427


>gi|254463246|ref|ZP_05076662.1| MiaB-like tRNA modifying enzyme [Rhodobacterales bacterium
           HTCC2083]
 gi|206679835|gb|EDZ44322.1| MiaB-like tRNA modifying enzyme [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 417

 Score =  316 bits (810), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 118/436 (27%), Positives = 196/436 (44%), Gaps = 34/436 (7%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
            P+     + GC++N Y++  M+++  S G +        + +++NTC +  +A  K   
Sbjct: 3   APK---FTTLGCRLNAYETEAMKELSQSAGLQ--------NAVIVNTCAVTAEAVRKARQ 51

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL--L 140
            + ++R       +E  +  ++V GC AQ E E        V+ V+G     R      L
Sbjct: 52  EIRKLR-------RENPEARLIVTGCAAQTEPET-FTAMGEVDAVIGNTEKMRADTWQGL 103

Query: 141 ERARFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
                G+   V  D  +        ++DG   R R   A++ +Q GCD  CTFC++PY R
Sbjct: 104 AADFIGETEAVQVDDIMSVTETAGHLIDGFGTRSR---AYVQVQNGCDHRCTFCIIPYGR 160

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G   S     VV++ ++L+  G  E+ L G ++ +W G  L  E      ++  L  +  
Sbjct: 161 GNSRSVPAGVVVEQIKRLVGKGYNEVVLTGVDLTSW-GADLPVEPKLGDLVMRILKLVPD 219

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           L RLR ++    ++ D L++A      LMP+LHL +Q+G D ILK M RRH   +     
Sbjct: 220 LPRLRISSIDSIEVDDNLMQAIATEPRLMPHLHLSLQAGDDMILKRMKRRHLRDDAIAFC 279

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
           +  + +RPD+   +D I GFP ETD  F  ++ L+++        F YSPR GTP + M 
Sbjct: 280 EEAKRLRPDMTYGADIIAGFPTETDTMFENSLKLIEECDLTWLHVFPYSPRNGTPAAKMP 339

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV 439
             V+  V   R   L+     +  +     +G    +L+E         +GR+     V 
Sbjct: 340 -AVNGKVIKARAAQLRNAGDAKVRAHLSKQIGMTHHILMENP------TMGRTEQFTEVT 392

Query: 440 LNSKNHNIGDIIKVRI 455
             +     G I+   I
Sbjct: 393 FETDQIE-GQIVTAPI 407


>gi|149204848|ref|ZP_01881810.1| MiaB-like tRNA modifying enzyme [Roseovarius sp. TM1035]
 gi|149141718|gb|EDM29773.1| MiaB-like tRNA modifying enzyme [Roseovarius sp. TM1035]
          Length = 419

 Score =  316 bits (810), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 123/442 (27%), Positives = 203/442 (45%), Gaps = 38/442 (8%)

Query: 21  CIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKV 80
              P+     + GC++N Y++  M+++    G          + +++NTC +  +A  K 
Sbjct: 2   SQAPK---FTTLGCRLNAYETEAMKELAGQAGL--------GNAVIVNTCAVTSEAVRKA 50

Query: 81  YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140
              + R+R       +E  +  ++V GC AQ E E      P V+ V+G           
Sbjct: 51  RQEIRRLR-------RENPEARLIVTGCAAQTEPETFAA-MPEVDAVIGNTEKMAADTWA 102

Query: 141 ERA-----RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
             A        + +VD   SV +    L  +DG  +R R   A++ +Q GCD  CTFC++
Sbjct: 103 RLAGDFIGETERVLVDDIMSVRETAGHL--IDGFGSRSR---AYVQVQNGCDHRCTFCII 157

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
           PY RG   S     VV++ ++L+  G  E+ L G ++ +W G  L         ++  L 
Sbjct: 158 PYGRGNSRSVPAGVVVEQIKRLVGAGYNEVVLTGVDLTSW-GADLPAAPKLGDLVMRILR 216

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
            +  L RLR ++    ++ + L++A      LMP+LHL +Q G D ILK M RRH   + 
Sbjct: 217 LVPDLPRLRISSIDSIEVDENLMQAIATEPRLMPHLHLSLQHGDDLILKRMKRRHLRDDA 276

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
            +  +  R +RP++   +D I GFP ET+  F  ++ LV++        F YSPR GTP 
Sbjct: 277 IRFAEEARRLRPEMTFGADIIAGFPTETEAAFENSLRLVEECHLTWLHVFPYSPRPGTPA 336

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWL 435
           + M  QV       R   L+     +  +   A  G+   VL+E         +GR+   
Sbjct: 337 ARMP-QVKGPAIKARAARLRAAGEGRVAAHLAAQQGREHAVLMEAP------RMGRTEQF 389

Query: 436 QSVVLNSKNHNIGDIIKVRITD 457
             VV + ++H  G I++ R+T 
Sbjct: 390 TEVVFD-RDHPEGQIVRARVTG 410


>gi|313679667|ref|YP_004057406.1| RNA modification enzyme, miab family [Oceanithermus profundus DSM
           14977]
 gi|313152382|gb|ADR36233.1| RNA modification enzyme, MiaB family [Oceanithermus profundus DSM
           14977]
          Length = 445

 Score =  316 bits (809), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 125/451 (27%), Positives = 204/451 (45%), Gaps = 28/451 (6%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           +V  R  V++ GC++N  +S  +  M  +   E V   + ADL+V+NTC +   A     
Sbjct: 15  MVRMRIAVRTLGCKVNQVESDALVGMLAALEPEVVALEEGADLVVINTCSVTTTAESTAR 74

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             + R R       +   D  VVV GC A+   E+I       + VV  ++   LP ++ 
Sbjct: 75  KEIRRAR-------RANPDAFVVVTGCYAELAPEQIAEL--GADAVVPNRSKAELPRVIL 125

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
                   +  D       E     + G    R V AF+ IQ+GC+  C +C++P TRG 
Sbjct: 126 EHFG----LPADPVTAPPNEFWGAGERGLYSDR-VRAFVKIQDGCNAGCAYCIIPRTRGR 180

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E  R    V++EA  L   G  E+ L G  + ++      G     + LL  L+ +   V
Sbjct: 181 ERHRDWRSVLEEAEALAAAGYRELVLTGVRLGSYA-----GHPRGVAGLLEELAAVG--V 233

Query: 262 RLRYTTSHPRDMSDCLIKAHGDL-DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            LR ++  P D    L++  G     + P+LHL +Q+G+DR+L  M RR+    YR+++ 
Sbjct: 234 PLRLSSIEPEDTGPELLEVIGRYAPFVRPHLHLSLQTGADRLLALMGRRYDTAYYRELVA 293

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
             R+  P  A+++D I G P ET+D+ RAT+  + ++  ++   F Y+PR GT  + +  
Sbjct: 294 AARARIPGFALTTDVIAGLPTETEDEHRATLAFLREVHPSRVHVFTYTPRPGTRAARLP- 352

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440
           QV    +  R   L     E   +     +G+   VL+E+     G   G +P    V L
Sbjct: 353 QVPHAERKRRTHELIALAGELAEARMRPLLGRRTAVLVERV--RSGVAYGHTPDYYEVEL 410

Query: 441 NSKNHNIGDIIKVRITDVKISTL---YGELV 468
             +    G+ ++  I  V+  TL     E V
Sbjct: 411 RGEGLAAGEEVQAVIERVEGYTLAARRAEPV 441


>gi|114769928|ref|ZP_01447538.1| MiaB-like tRNA modifying enzyme [alpha proteobacterium HTCC2255]
 gi|114549633|gb|EAU52515.1| MiaB-like tRNA modifying enzyme [alpha proteobacterium HTCC2255]
          Length = 420

 Score =  316 bits (809), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 127/436 (29%), Positives = 208/436 (47%), Gaps = 37/436 (8%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
             + GC++N Y++  M+++  + G +        +++V+NTC +  +A  K    + ++R
Sbjct: 6   FMTQGCRLNAYETEAMKELADAAGLK--------NIVVVNTCAVTAEAVRKSKQEIRKLR 57

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGP---QTYYRLPELLERARF 145
                  ++  +  ++V GC AQ E +        V++V+G           E+  +  F
Sbjct: 58  -------RDNPNSQMIVTGCAAQIEPKT-FSEMSEVDLVIGNTEKMDSNTWNEISNKPDF 109

Query: 146 ----GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
                K +VD   SV++    L  +DG   R R   A++ +Q GCD  CTFC++PY RG 
Sbjct: 110 VGKTEKVMVDDIMSVKNTAGHL--IDGFGTRSR---AYVQVQNGCDHRCTFCIIPYGRGN 164

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
             S     VVD+ ++L+D G  E+ L G ++ +W G  L         +   L  +  L 
Sbjct: 165 SRSVPAGVVVDQIKRLVDTGYNEVVLTGVDITSW-GADLPMVPKLGDLVQRILKLVPDLP 223

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           RLR ++    +    LI A      LMP+LHL +Q+G D ILK M RRH   +  +   +
Sbjct: 224 RLRISSIDSIEADPALIDAISSEMRLMPHLHLSLQAGDDMILKRMKRRHLRDDAIEFCSK 283

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +RSVRP+I   +D I GFP ET++ F  +++L+ + G      F +SPR GTP + M  Q
Sbjct: 284 MRSVRPNIVYGADIIAGFPTETEEMFENSLNLIKECGLTWLHVFPFSPREGTPAARMP-Q 342

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           +D ++  ER   L+            A +G    VLIE       + +GR+     V+ N
Sbjct: 343 MDRSIIKERAARLRLCGELAVKDHLAAQIGLEHNVLIE------NERMGRTEGFTEVLFN 396

Query: 442 SKNHNIGDIIKVRITD 457
                 G I+  +I D
Sbjct: 397 KDQIK-GSIVNAKIVD 411


>gi|163757349|ref|ZP_02164438.1| hypothetical protein HPDFL43_18102 [Hoeflea phototrophica DFL-43]
 gi|162284851|gb|EDQ35133.1| hypothetical protein HPDFL43_18102 [Hoeflea phototrophica DFL-43]
          Length = 455

 Score =  316 bits (809), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 121/441 (27%), Positives = 192/441 (43%), Gaps = 28/441 (6%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V ++GC++N ++S  M     + G          + +++NTC +   A  +    + R+R
Sbjct: 3   VVTFGCRLNTFESETMRKAAETAGLN--------NAVLVNTCAVTADAVRQARQTIRRLR 54

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
                  ++     +VV+GC AQ E E        V+ V+G           +   FG  
Sbjct: 55  -------RDNPHARIVVSGCAAQTEPETFAG-MDEVDAVIGNDAKGEAATYRKLPDFGVS 106

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
             +     +    R +             AF+ +Q GCD  CTFCV+PY RG   S  + 
Sbjct: 107 QSEKIRVNDIMAVRETAPQMIEAVAGHARAFVQVQNGCDHRCTFCVIPYGRGNSRSVPMG 166

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
            VVD+ R L++NG  E+ + G +  +  G  L G     +     L++I  L RLR ++ 
Sbjct: 167 AVVDQIRTLVENGYQEVVITGVDATS-YGADLPGRPSLGTLARTILNQIPELQRLRLSSI 225

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
              ++ D L+    D    MPYLHL +Q G D ILK M RRH+  +       +R +RP 
Sbjct: 226 DSIEVDDALMDLIADEPRFMPYLHLSLQHGDDMILKRMKRRHSRDDAVSFCRTVRDLRPG 285

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
            A  +D I GFP ET++ F  ++++++  G +    F YSPR GTP + M  Q+D  +  
Sbjct: 286 FAFGADLIAGFPTETEEMFARSLEIIEACGISFLHVFPYSPREGTPAARMP-QLDRGLIK 344

Query: 389 ERLLCLQKKLREQQVSFNDACV--GQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHN 446
            R   L+    +   +        G I   L+E  G      + R+     VV       
Sbjct: 345 TRAARLRDSGEKAYRAHLGEMARTGGIHSALVEFSG------IARTENFTPVVAPGAPK- 397

Query: 447 IGDIIKVRITDVKISTLYGEL 467
            G +  +R+T      L GEL
Sbjct: 398 -GQMALIRVTGQDGERLTGEL 417


>gi|116622276|ref|YP_824432.1| MiaB-like tRNA modifying enzyme [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116225438|gb|ABJ84147.1| MiaB-like tRNA modifying enzyme [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 444

 Score =  316 bits (809), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 121/435 (27%), Positives = 208/435 (47%), Gaps = 25/435 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +FFV+++GC+    D   +E +  ++G E   +   ADL+VLNTC +   A + V   + 
Sbjct: 3   KFFVQNFGCRATQADGAALESLLAAKGLEATGARAGADLVVLNTCTVTASADDDVRQTIR 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R+        +E     ++V GC AQ   EE++   P V  VVG     ++ E++  A  
Sbjct: 63  RVH-------RENPAARILVTGCYAQRAPEELIA-LPGVEWVVGNSHKTQIAEIVTAAPV 114

Query: 146 GKRVVDTDYSVEDKFERL-----SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
            +     +  + D F +       + D   +R R     L IQ+GC+  C+FC++P+ RG
Sbjct: 115 TEAFYHGNIHIGDIFAQHDFLSAPVEDAAGDRTRPN---LKIQDGCNNRCSFCIIPFVRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
              S   +QVV++ R L      E+ L G N+   R     G     + LL  L     +
Sbjct: 172 RSRSAPAAQVVEQVRALAAR-YHEVVLSGINLG--RWGREPGSSMRLAGLLRLLLAETDV 228

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            RLR ++  P D S+ L+        +  ++H P+QSGSDR+L+ M+R++    Y   + 
Sbjct: 229 ARLRLSSVEPMDFSEDLLHLMAASPRIANHVHAPLQSGSDRVLRRMHRKYRPRHYADRVL 288

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           + R++ PD AI +D +VGFPGETD +F  +   ++++ +     F YS R GTP +    
Sbjct: 289 KARALMPDGAIGADVMVGFPGETDAEFEESRRFIEQLPFTYLHVFTYSERPGTPAAESEH 348

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440
            V   V+ ER   L++    + ++F ++ +G+ +  +      E G  +  +     V L
Sbjct: 349 PVPMPVRKERNRVLRELAAAKNLAFRESMIGRTLSAV---TLAETG--IALTENYLKVEL 403

Query: 441 NSKNHNIGDIIKVRI 455
            S     G ++ + I
Sbjct: 404 ASPRE-PGALVDLHI 417


>gi|303237126|ref|ZP_07323696.1| MiaB-like protein [Prevotella disiens FB035-09AN]
 gi|302482513|gb|EFL45538.1| MiaB-like protein [Prevotella disiens FB035-09AN]
          Length = 452

 Score =  316 bits (809), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 122/443 (27%), Positives = 195/443 (44%), Gaps = 23/443 (5%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +     + GC++N  ++          G       + AD+ ++NTC + E A  K    +
Sbjct: 10  KTAKYHTLGCKLNFSETSTFARSLREMGVREAKKDEIADICLINTCSVTEVADHKCRQII 69

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R+        ++     +VV GC AQ  G E +   P VN+V+G      L + L  A 
Sbjct: 70  NRMA-------RQNPGAFIVVTGCYAQL-GSERVAEIPGVNLVLGSNEKANLIQFLSDAW 121

Query: 145 FGKRVVDTDYSVEDKFERLSI-------VDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197
               +       + K    S+            +R      FL +Q+GC+ FCT+C +PY
Sbjct: 122 NNPTIGTNSDEEKKKAIFHSVKTKDIVTFQPSCSRGNRTRYFLKVQDGCNYFCTYCTIPY 181

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257
            RG   + ++  +V++A +    G  EI L G N+    G        +F DL+ +L ++
Sbjct: 182 ARGFSRNPTIQSLVEQAEQAAKEGGKEIVLTGVNI----GDFGRTTSESFLDLVKALDQV 237

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
           +G+ R R ++  P  + D LI+        MP+ H+P+QSGSD +LK M+RR+    +  
Sbjct: 238 EGIERFRISSLEPDLIDDELIRYCATSRAFMPHFHIPLQSGSDEVLKLMHRRYDTALFAH 297

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
            I+ I+ + PD  I  D +VG  GE    F    + +  +   Q   F YS R GT   +
Sbjct: 298 KINLIKEITPDAFIGVDVMVGCRGEEPQYFDDCYNFLSSLPITQLHVFPYSERPGTSALS 357

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQS 437
           +   VDE  K  R   L +   E    F    +G+  EVL+EK  + K  + G +     
Sbjct: 358 IPYVVDEKEKKCRARQLLQLSDEMTHKFYAEHIGKEAEVLLEKAVRGKS-MHGFTKNYIR 416

Query: 438 VVLNS---KNHNIGDIIKVRITD 457
           V LN    +      IIKVR+ D
Sbjct: 417 VELNPTQVREEYDNQIIKVRLGD 439


>gi|313825174|gb|EFS62888.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes
           HL063PA1]
 gi|314978454|gb|EFT22548.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes
           HL072PA2]
 gi|315088894|gb|EFT60870.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes
           HL072PA1]
 gi|327331966|gb|EGE73703.1| Fe-S oxidoreductase [Propionibacterium acnes HL096PA3]
          Length = 474

 Score =  316 bits (809), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 127/479 (26%), Positives = 202/479 (42%), Gaps = 46/479 (9%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
              + S GC  N  DS  +     + G+  V+   +A+ +V+NTC   E+A +     L 
Sbjct: 2   TVHLVSMGCARNDVDSEELAARMEAGGFRLVDDPAEAETVVVNTCGFIEQAKKDSVDTLL 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
              +LK +    G    VV  GC+A+  G E+    P  + V+G   Y  +   L     
Sbjct: 62  AAADLKGN----GITTSVVAVGCMAERYGRELAESLPEADAVLGFDDYGDIAGRLRTILD 117

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKR------------------------------- 174
              +             +S VD    R                                 
Sbjct: 118 DGSLETHVPRDRRTLLPISPVDRPTARAEVSVPGHGTAPDLSASVTPDSGPRATRRRLGT 177

Query: 175 GVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA 234
           G +A L +  GCD+ C FC +P  RG  +SR ++++V+EAR L+D+GV E+ L+ +N ++
Sbjct: 178 GPSAPLKMASGCDRRCAFCAIPRFRGSYLSRPIAEIVEEARWLVDHGVKEVFLVSEN-SS 236

Query: 235 WRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP 294
             GK L G+      LL +L ++ GL  +R +   P ++   LI      D ++PY  L 
Sbjct: 237 SYGKDL-GDLRLLEKLLVNLDQVDGLEWIRVSYLQPAELRPGLIDTILATDKVVPYFDLS 295

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
            Q  S  +L+ M R   A  +  IID IRS  P+  + S+FI GFPGETD D     D +
Sbjct: 296 FQHASGPLLRRMRRFGDAESFLNIIDSIRSRCPEAGLRSNFITGFPGETDADVAVLADFL 355

Query: 355 DKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQII 414
            +     A  F YS   GT  + +   VDE+V   R   L     E      +  +G   
Sbjct: 356 QRARLDVAGVFAYSDEEGTEAAGLDGHVDEDVVTARREDLADLTDELVSQRAEDRIGTRG 415

Query: 415 EVLIEKHGKEKGKLVGRS----PWLQSVV--LNSKNHNIGDIIKVRITDVKISTLYGEL 467
            V++E+  +    ++GR+    P +   V  +++   ++GDI+ V         L    
Sbjct: 416 RVMVEEIDEA---VIGRAEHQGPEVDGCVTLVDAAAVSVGDIVDVEFVGSDGVDLVARP 471


>gi|84489190|ref|YP_447422.1| 2-methylthioadenine synthetase [Methanosphaera stadtmanae DSM 3091]
 gi|84372509|gb|ABC56779.1| predicted 2-methylthioadenine synthetase [Methanosphaera stadtmanae
           DSM 3091]
          Length = 424

 Score =  316 bits (809), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 117/446 (26%), Positives = 226/446 (50%), Gaps = 26/446 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + +++++GC  N  D+  M ++   + Y+ V  +++AD+I+LNTC+++    +K+ + + 
Sbjct: 2   KIYLETHGCTFNQADTDIMANILAKK-YDIVYDVEEADVIILNTCYVKLPTEQKMITKIR 60

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           + +        E  D  +++ GC+ + + ++ L +    +  +GP    ++ E++E+A  
Sbjct: 61  KYKT-------EFPDKKLIIGGCMVEVD-DKRLEKFAGDDCWIGPHKLDKVDEVVEKAIN 112

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G+ V +   +   K         G      +   L I EGC+  CTFC     RG  IS 
Sbjct: 113 GEVVHEYGKTRAIK------AGKGKKNSESLVHILQICEGCNGQCTFCCTRIARGFLISY 166

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            +  +V+EA+  +++G  E+ +  Q+   +     +    +F+DLL  L  I+G  R+R 
Sbjct: 167 PIDVIVEEAKDAVEHGCKELQVTAQDTACFGMDTGE----SFADLLNKLGAIEGDFRIRV 222

Query: 266 TTSHPRDMS---DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
              +P+ +      +I A  + D +  ++HLP+QSGS ++LK MNR+HT  EY+ I++  
Sbjct: 223 GMMNPQSIKNQLHEVIDAFKNNDKIFNFVHLPIQSGSPKVLKEMNRKHTLDEYKYILNEF 282

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R   P +++++D IVG+P ET++DF  T++L+ +I        KY  R G   +++ E +
Sbjct: 283 RKEIPQMSLATDIIVGYPTETEEDFNQTLELLKEIKPDIVHISKYMHRPGAKSNHLKE-I 341

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
           D N+   R   + +   E  +  N      I  VLI   G   G  VG +   ++V+++ 
Sbjct: 342 DHNIMKNRSHRVNQVKTEVMLEKNKEYENTIQNVLITSKGSSGG-YVGYTDSYKNVIVD- 399

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
               IG  + V+I + K + L  + +
Sbjct: 400 -EAEIGSFMDVKIIEGKRTYLLAQRI 424


>gi|327400612|ref|YP_004341451.1| MiaB family RNA modification protein [Archaeoglobus veneficus SNP6]
 gi|327316120|gb|AEA46736.1| RNA modification enzyme, MiaB family [Archaeoglobus veneficus SNP6]
          Length = 417

 Score =  315 bits (808), Expect = 8e-84,   Method: Composition-based stats.
 Identities = 128/444 (28%), Positives = 218/444 (49%), Gaps = 34/444 (7%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R  +++YGC MN  DS  +      +    ++S++DAD++V+N+C + +    K+ +   
Sbjct: 2   RVAIETYGCTMNQADSDIIRAEVSREF--ELSSVEDADVVVINSCGVIDYTERKILNRAR 59

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           ++R +            VV+AGC+ +   +++     + N  + P   +R+ E+++ A  
Sbjct: 60  QLRQM---------GKTVVMAGCLPRIAKKKV---MEVANAAISPDNVHRIDEVIKAAVS 107

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G ++   D S  DK            R  G  A ++I EGC   CTFC   + RG   S 
Sbjct: 108 GNKLFLLDKSEIDK------TRCEKQRMAGGIAIVSIAEGCTGRCTFCATRFARGRLRSF 161

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           S   +V+E +K +  G  EI L  Q+  A  G  +        DLL  +S I+G+ R+R 
Sbjct: 162 SPDGIVEEIKKAVRAGYVEIQLTSQDTGA-YGHDI---GTNLPDLLEKISAIEGMFRVRV 217

Query: 266 TTSHPRD---MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
              +PR    M D L+ A  + + +  +LHLPVQSG +++L+ M R H   EY +++   
Sbjct: 218 GMMNPRHAYSMLDDLLNAF-ESEKIYKFLHLPVQSGDEKVLRDMGRDHGVEEYEEVVSAF 276

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R    D+ IS+D IVGFP E+++ F  ++DLV +         +YSPR GTP   + + +
Sbjct: 277 RKRFDDVMISTDIIVGFPTESEEAFYKSLDLVRRTRPDLVNVTRYSPRKGTPAFRLRD-M 335

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
            + +K +R   + +     +   N   VG+  +V+I    K    L+ R+   + V+L  
Sbjct: 336 PDWIKKDRSRAVTRLANRIKEKKNSTFVGKTFDVVIT---KRSNGLLSRTNAYRPVILKQ 392

Query: 443 KNHNIGDIIKVRITDVKISTLYGE 466
               IG+  +VR+TD   + L GE
Sbjct: 393 GE--IGEFCRVRVTDYTPTHLIGE 414


>gi|300871406|ref|YP_003786279.1| putative 2-methylthioadenine synthetase [Brachyspira pilosicoli
           95/1000]
 gi|300689107|gb|ADK31778.1| putative 2-methylthioadenine synthetase [Brachyspira pilosicoli
           95/1000]
          Length = 440

 Score =  315 bits (808), Expect = 8e-84,   Method: Composition-based stats.
 Identities = 131/457 (28%), Positives = 213/457 (46%), Gaps = 33/457 (7%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           Q  ++ S GC+ N  D   +  +    GY+ V+  +DAD+IV+NTC   E + ++    +
Sbjct: 2   QNIYLHSLGCEKNTVDGEHILAILNKNGYKIVDKAEDADVIVINTCAFIEDSKKESIDAI 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
                  +   K G    ++V+GC+++   E  +     V+  +G     ++   +E+  
Sbjct: 62  FD----HSLYKKYGKCKRLIVSGCMSERYKENFMEMFQEVDSAIGIHDLEKILTAVEKDG 117

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
           F     +T Y   + F+R+       N     +A++ I +GC   C+FC +P  RG   S
Sbjct: 118 FHDAEENTTYK--EYFDRI-------NTSTNYSAYIRISDGCHANCSFCAIPSIRGKHRS 168

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R +  +V EAR+   NG  EI L+      + G  +  +K    DLL  LS I G+  +R
Sbjct: 169 RKIEDIVKEAREYAKNGAKEINLIAHETT-YYGYDIY-KKLALPDLLKELSVIDGIEWIR 226

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA-YEYRQIIDRIR 323
               +P  ++  +I A    + ++PY  +P+Q     ILK MNR +     Y+ +I+ IR
Sbjct: 227 VLYQNPVVLNKSIIDAMFKTEKVVPYFDIPLQHIDKDILKDMNRGNRGYSFYKDMINYIR 286

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           S   +  I +  IVGFPGET + F+  +  V K+   +   F YS    T    +L    
Sbjct: 287 SYDENAVIRTSLIVGFPGETVESFKKLVSFVKKMKLDRVGVFTYSEEENTDA--LLINKK 344

Query: 384 ENVKAERLL---CLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQ 436
           +  K ++L+    L +   E         +G+ I+VLIEK  KE+ K +GRS    P + 
Sbjct: 345 KISKNKKLMLRDKLMRIALEVSEERLSRFIGKSIDVLIEK--KEEDKFIGRSKYDAPEVD 402

Query: 437 S---VVLNSKNH---NIGDIIKVRITDVKISTLYGEL 467
               V  + KN    NIGDI+KV+I       L G L
Sbjct: 403 GFVEVYFDKKNVDNINIGDIVKVKIVHNTEYDLVGNL 439


>gi|312879348|ref|ZP_07739148.1| SSU ribosomal protein S12P methylthiotransferase [Aminomonas
           paucivorans DSM 12260]
 gi|310782639|gb|EFQ23037.1| SSU ribosomal protein S12P methylthiotransferase [Aminomonas
           paucivorans DSM 12260]
          Length = 432

 Score =  315 bits (808), Expect = 8e-84,   Method: Composition-based stats.
 Identities = 117/447 (26%), Positives = 186/447 (41%), Gaps = 33/447 (7%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
            F  S GC  N  DS R   +    GY        ADL V+NTC   + A  +    +  
Sbjct: 4   VFTLSLGCSKNRVDSERFLGILHEAGYRGTQDPRGADLCVVNTCGFLQSAVAENLDAILD 63

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           +  +K      G    + V GC+      E+    P V+++   + +      L   R  
Sbjct: 64  LERMKER----GEVGRIAVVGCLVNRYEAELRAELPTVDLLARAEDWEGFRRFLGVPRSS 119

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
                             ++ GG    R    +L + EGCD  C++C++P  RG   S  
Sbjct: 120 G--------------CRMVLPGGDRFVR----YLKVAEGCDNRCSYCMIPSIRGPLRSLP 161

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS-EIKGLVRLRY 265
           L  +V EA  L+  G  EI L+ Q++ A  G    G + + +DLL +L   + G V LR 
Sbjct: 162 LRDLVREAEALVAEGAREICLVAQDLTA-YGLDR-GGRESLTDLLDALEPSLPGDVFLRL 219

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
              HP  ++  L++       +  YL +PVQ  S RIL +M R        ++ +  RS+
Sbjct: 220 LYLHPERITPALLERVAKSPQIHSYLDVPVQHASPRILAAMGRPSDPETLARLFETARSI 279

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            PD A+ +  +VGFP ET+ D    +  ++++ + +  +F +SP  G P + +   V  +
Sbjct: 280 DPDFALRTTVMVGFPQETEADLSVLLRFLERVRFDRIGAFAFSPEEGAPAATLPHPVRPS 339

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVLN 441
               RL  +                G+++ VL+E+   E+G L GRS    P +  VV  
Sbjct: 340 TARRRLERVMDLGASLSFRRQRLFEGRLLSVLVERV--EEGVLEGRSFREAPEVDGVVEI 397

Query: 442 --SKNHNIGDIIKVRITDVKISTLYGE 466
                   G  I VRI +     L G 
Sbjct: 398 RGGDALLPGQRISVRILEALEHDLIGR 424


>gi|90421738|ref|YP_530108.1| MiaB-like tRNA modifying enzyme [Rhodopseudomonas palustris BisB18]
 gi|90103752|gb|ABD85789.1| MiaB-like tRNA modifying enzyme [Rhodopseudomonas palustris BisB18]
          Length = 420

 Score =  315 bits (808), Expect = 9e-84,   Method: Composition-based stats.
 Identities = 126/447 (28%), Positives = 192/447 (42%), Gaps = 41/447 (9%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
             V ++GC++N ++S  +     + G          D IV+N+C +  +A  +    + R
Sbjct: 3   VEVVTFGCRLNAFESELIRRQAEAAGCT--------DTIVVNSCAVTNEAVAQARQSIRR 54

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER---- 142
           ++       +E     +VV GC AQ     +      V+ V+G     R           
Sbjct: 55  LK-------RERPSARIVVTGCAAQT-QAAMFADMVEVDRVLGNDDKMRGTAWRAAQTAF 106

Query: 143 ------ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
                       V D     E     L     G  R      F+ +Q GCD  CTFC++P
Sbjct: 107 AAGPVPGAEKIAVADIMAVREMAPHLLDGYQSGLPRV-----FVQVQNGCDHRCTFCIIP 161

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256
           + RG   S  L+  V++ R L + G  EI L G ++ +  G  L G           L E
Sbjct: 162 FGRGNSRSVPLAAAVEQVRALTERGHAEIVLTGVDLTS-YGADLAGAPTLGLLTKQILRE 220

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           +  L RLR ++    +    L+    +   LMP+LHL +QSG D ILK M RRH   +  
Sbjct: 221 VPELQRLRISSIDSIEADADLLDVVANEPRLMPHLHLSLQSGDDLILKRMKRRHCRAQAI 280

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
           +   ++R +RPDIA+ +D I GFP ETD+ F  ++DLV+    +    F YSPR GT  +
Sbjct: 281 EFCAQLRRLRPDIALGADLIAGFPTETDEMFARSLDLVEACDLSLLHVFPYSPRPGTAAA 340

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQ 436
            M  QVD N   +R   L++      +   DA +G   EVLIE   +      GR+    
Sbjct: 341 KMP-QVDGNAVKQRAKRLREAGDAALLRRLDAEIGAAREVLIESPSQ------GRTEHFL 393

Query: 437 SVVLNSKNHNIGDIIKVRITDVKISTL 463
            V +       G + ++ IT    + L
Sbjct: 394 PVAIAGDT--PGAVRRLTITGHDGARL 418


>gi|145593944|ref|YP_001158241.1| MiaB-like tRNA modifying enzyme YliG [Salinispora tropica CNB-440]
 gi|238066595|sp|A4X4R3|RIMO_SALTO RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|145303281|gb|ABP53863.1| MiaB-like tRNA modifying enzyme YliG [Salinispora tropica CNB-440]
          Length = 507

 Score =  315 bits (808), Expect = 9e-84,   Method: Composition-based stats.
 Identities = 119/508 (23%), Positives = 197/508 (38%), Gaps = 70/508 (13%)

Query: 13  MVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHI 72
           MVS         +R  + + GC  N  DS  +     S G++     + AD++V+NTC  
Sbjct: 1   MVSATPPAPADGRRVALLTLGCARNEVDSEELAARLHSDGWQVTTDGEGADVVVVNTCGF 60

Query: 73  REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT 132
            EKA +     L                  VV AGC+A+  G E+    P    V+    
Sbjct: 61  VEKAKQDSIQTLLAAAE---------TGAKVVAAGCMAERYGRELAESLPEAQAVLSFDD 111

Query: 133 YYRLPELLERARFGKRVVDTDYSVEDKFERLSIVD------------------------- 167
           Y  + + L     G   +D  ++  D+ E L +                           
Sbjct: 112 YPDISDRLGAVLAG-TAIDA-HTPRDRRELLPLTPVRRGEAAVSLPGHGTPAAVAQPGAR 169

Query: 168 --------------GGYNRKR---GVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
                             R+R   G  A L +  GCD+ C FC +P  RG  +SR    +
Sbjct: 170 SAPIEVDEHTPAHLRPVLRRRLDTGPVASLKLASGCDRRCAFCAIPAFRGAFVSRPPEAL 229

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270
           + EA  L   GV E+ L+ +N ++  GK L G+      LL  L+ + G+VR+R +   P
Sbjct: 230 LAEAEWLARTGVRELVLVSEN-SSSYGKDL-GDPRALEKLLPQLAAVDGIVRVRASYLQP 287

Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330
            +    L++A      + PY  L  Q  S+ +L+ M R  +   + +++  IR++ P+  
Sbjct: 288 AETRPGLVEAIATTPGVAPYFDLSFQHSSEAVLRRMRRFGSTDRFLELLGSIRALSPEAG 347

Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER 390
             S+FIVGFPGET  D    +  +++        F YS   GT  + +  +V       R
Sbjct: 348 ARSNFIVGFPGETRADVAELVRFLEEARLDAIGVFDYSDEDGTEAAGLSGKVTTATVKRR 407

Query: 391 LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQS----VVLNS 442
              L     E      +  +G  ++VL++    + G + GR    +P +      V    
Sbjct: 408 YDRLSALADELCAQRAEQRLGSTVQVLVD--SVDGGVVEGRAAHQAPEVDGSTTLVAPVG 465

Query: 443 KN-----HNIGDIIKVRITDVKISTLYG 465
                     GD+++  +T  +   L  
Sbjct: 466 GGVDLTALRPGDLVECTVTATEGVDLVA 493


>gi|289427177|ref|ZP_06428893.1| ribosomal protein S12 methylthiotransferase RimO [Propionibacterium
           acnes J165]
 gi|289159646|gb|EFD07834.1| ribosomal protein S12 methylthiotransferase RimO [Propionibacterium
           acnes J165]
          Length = 481

 Score =  315 bits (807), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 127/479 (26%), Positives = 202/479 (42%), Gaps = 46/479 (9%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
              + S GC  N  DS  +     + G+  V+   +A+ +V+NTC   E+A +     L 
Sbjct: 9   TVHLVSMGCARNDVDSEELAARMEAGGFRLVDDPAEAETVVVNTCGFIEQAKKDSVDTLL 68

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
              +LK +    G    VV  GC+A+  G E+    P  + V+G   Y  +   L     
Sbjct: 69  AAADLKGN----GITTSVVAVGCMAERYGRELAESLPEADAVLGFDDYGDIAGRLRTILD 124

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKR------------------------------- 174
              +             +S VD    R                                 
Sbjct: 125 DGSLETHVPRDRRTLLPISPVDRPTARAEVSVPGHGTAPDLSASVTPDSGPRATRRRLGT 184

Query: 175 GVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA 234
           G +A L +  GCD+ C FC +P  RG  +SR ++++V+EAR L+D+GV E+ L+ +N ++
Sbjct: 185 GPSAPLKMASGCDRRCAFCAIPRFRGSYLSRPIAEIVEEARWLVDHGVKEVFLVSEN-SS 243

Query: 235 WRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP 294
             GK L G+      LL +L ++ GL  +R +   P ++   LI      D ++PY  L 
Sbjct: 244 SYGKDL-GDLRLLEKLLVNLDQVDGLEWIRVSYLQPAELRPGLIDTILATDKVVPYFDLS 302

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
            Q  S  +L+ M R   A  +  IID IRS  P+  + S+FI GFPGETD D     D +
Sbjct: 303 FQHASGPLLRRMRRFGDAESFLNIIDSIRSCCPEAGLRSNFITGFPGETDADVAVLADFL 362

Query: 355 DKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQII 414
            +     A  F YS   GT  + +   VDE+V   R   L     E      +  +G   
Sbjct: 363 QRARLDVAGVFAYSDEEGTEAAGLDGHVDEDVVTARREDLADLTDELVSQRAEDRIGTRG 422

Query: 415 EVLIEKHGKEKGKLVGRS----PWLQSVV--LNSKNHNIGDIIKVRITDVKISTLYGEL 467
            V++E+  +    ++GR+    P +   V  +++   ++GDI+ V         L    
Sbjct: 423 RVMVEEIDEA---VIGRAEHQGPEVDGCVTLVDAAAVSVGDIVDVEFVGSDGVDLVARP 478


>gi|163869369|ref|YP_001610625.1| hypothetical protein Btr_2683 [Bartonella tribocorum CIP 105476]
 gi|161019072|emb|CAK02630.1| conserved hypothetical protein [Bartonella tribocorum CIP 105476]
          Length = 427

 Score =  315 bits (807), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 113/442 (25%), Positives = 190/442 (42%), Gaps = 24/442 (5%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
             + ++GC++N Y+S  +     S G +++        I+ NTC +  +A  +    + +
Sbjct: 3   VEIVTFGCRLNSYESEIIRKESTSSGLDQLKDG----AIIFNTCAVTAEAVRQAKQAIRK 58

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
            R       +E     ++V GC AQ E +     +  V++V+G +         +   FG
Sbjct: 59  AR-------RENPHARIIVTGCAAQTEAQNFASMT-EVDLVLGNEDKLHAHSYRQLPDFG 110

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYN-RKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
               +    + D  E   I     +  +    AF+ +Q GCD  CTFC++PY RG   S 
Sbjct: 111 INHSEKV-RINDIMEVQKIAPHMVSAMQERTRAFVQVQNGCDHRCTFCIIPYGRGPSRSV 169

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            +  V+++ RKL   G+ E+ L G ++ +  G  L G+          L  +  L RLR 
Sbjct: 170 PMGAVIEQIRKLTGEGIQEVVLTGVDLTS-YGHDLPGKATLGKLTSAILHHVPDLARLRL 228

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
           ++    +  + LI        +MP+LHL +Q+G + ILK M RRH      Q    +R+ 
Sbjct: 229 SSIDSIEADEELINLLAYEKRIMPHLHLSLQAGDNMILKRMKRRHLREHAIQFCQELRAK 288

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
           RP +   +D I GFP ET++ F+ ++ L+          F +SPR GTP + M  QV+  
Sbjct: 289 RPTMVYGADLIAGFPTETEEMFQNSLALIKDCHLTHLHVFPFSPREGTPAARMP-QVNRK 347

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445
           +   R   L+K   E               +L+EK        +GR+     V +     
Sbjct: 348 IVKMRAERLRKAGEEAYQKHLAHLQNSQQTILVEKDE------IGRTEDYTLVQIKG--A 399

Query: 446 NIGDIIKVRITDVKISTLYGEL 467
             G I++  I +     L   L
Sbjct: 400 KAGTIVQALIINHDGDKLIAVL 421


>gi|225620158|ref|YP_002721415.1| 2-methylthioadenine synthetase [Brachyspira hyodysenteriae WA1]
 gi|225214977|gb|ACN83711.1| MiaB, 2-methylthioadenine synthetase [Brachyspira hyodysenteriae
           WA1]
          Length = 440

 Score =  315 bits (807), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 123/455 (27%), Positives = 208/455 (45%), Gaps = 27/455 (5%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           Q  ++ S GC+ N  D   +  +   +G+   N+ +DAD+IV+NTC   E + ++    +
Sbjct: 2   QNIYLHSLGCEKNTVDGEHILAILQKKGFNITNNPEDADIIVINTCAFIEDSKKESIDAI 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
                  +   K G    ++V+GC+++   E  L     V+  +G      + + +E   
Sbjct: 62  FD----HSMYKKYGKCKRLIVSGCMSERYKENFLEMFKEVDSAIGIYDLENILKAVEEDG 117

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
           F     +T+Y                N     + ++ I +GC   C+FC +P  RG   S
Sbjct: 118 FHDAKENTEYKE---------YGDRVNTGTKYSVYIRISDGCHANCSFCAIPGIRGEHRS 168

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R +  +V EA     NG  EI L+ Q    + G  +  +K    DLL +LS+++G+  +R
Sbjct: 169 RKIEDIVKEAENYAKNGAKEINLIAQETT-FYGYDIY-KKLALPDLLKALSKVEGIEWIR 226

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA-YEYRQIIDRIR 323
               +P  ++D +I++  + + ++PY  +P+Q     ILK MNR   +   YR++ID+IR
Sbjct: 227 VLYQNPVVLNDEIIESFFNTEKVVPYFDIPLQHVDKDILKDMNRGTRSYKFYREMIDKIR 286

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           S   D  I +  IVGFPGET + F+  +  V      +   F YS    T    + +   
Sbjct: 287 SYNNDAVIRTSLIVGFPGETAESFKKLIKFVRNAKLDRVGVFTYSEEENTKALLINKPKM 346

Query: 384 ENVKAERLLC-LQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSV 438
              K   L   L +   E      +  +G+ I+VLIEK  ++  K +GRS    P +   
Sbjct: 347 SRNKKLILREKLMRAAIEVSEKRLERFIGRTIDVLIEKK-EDDNKFIGRSIYDAPEVDGY 405

Query: 439 V-----LNSKNHNIGDIIKVRITDVKISTLYGELV 468
           V       + N NIGDI++V +T      L G ++
Sbjct: 406 VEVYNENTNNNINIGDIVQVAVTHNTEYDLIGNVI 440


>gi|150398286|ref|YP_001328753.1| MiaB-like tRNA modifying enzyme [Sinorhizobium medicae WSM419]
 gi|150029801|gb|ABR61918.1| MiaB-like tRNA modifying enzyme [Sinorhizobium medicae WSM419]
          Length = 424

 Score =  315 bits (807), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 119/438 (27%), Positives = 189/438 (43%), Gaps = 28/438 (6%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
             V ++GC++N Y+S  M       G          + +++NTC +  +A  +    +  
Sbjct: 4   VEVITFGCRLNTYESEVMRAEAEKAGLN--------NAVLVNTCAVTAEAVRQARQAI-- 53

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
                    +E     ++V GC AQ E E     +  V+ V+G +             FG
Sbjct: 54  -----RRARRENPHARIIVTGCAAQTEKETFAEMA-EVDAVLGNEEKLTSASYRSLPDFG 107

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRG-VTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
               +    V D     +          G V AF+ +Q GCD  CTFC++PY RG   S 
Sbjct: 108 VSA-EEKLRVNDIMSVRATAPQMVKHIDGHVRAFIQVQNGCDHRCTFCIIPYGRGNSRSV 166

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            +  VVD+AR+L++ G  EI L G +  +  G  L G           L ++  ++RLR 
Sbjct: 167 PMGAVVDQARRLVEGGYREIVLTGVDATS-YGADLPGTPTLGLLAKTLLKQVPEILRLRL 225

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
           ++    +    L+    +    MP+LHL +Q G D +LK M RRH++ + R     +  +
Sbjct: 226 SSIDSIEADVHLLDLIAEEPRFMPHLHLSLQHGDDLMLKRMKRRHSSADARAFCAEVLRL 285

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
           RP+I+ S+D I GFP ET+  F+  + L +  G A    F YSPR GTP + M  Q+D  
Sbjct: 286 RPEISFSADMIAGFPTETEAMFQNAVRLAEDCGLAHLHVFPYSPRPGTPAARMP-QLDRV 344

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445
           +  ER   L+ K  E      +  VG    VL+E +G      +  +     V  ++   
Sbjct: 345 LVKERAARLRAKGAELHTVHLERMVGSRQMVLVEMNG------LAHTENFTLV--DAAGL 396

Query: 446 NIGDIIKVRITDVKISTL 463
               ++   IT      L
Sbjct: 397 EPRSLVAAEITGHNGKHL 414


>gi|319406389|emb|CBI80030.1| conserved hypothetical protein [Bartonella sp. AR 15-3]
          Length = 427

 Score =  314 bits (806), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 116/441 (26%), Positives = 196/441 (44%), Gaps = 24/441 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
              + ++GC++N Y+S  +     S G +++      D I+ NTC +  +A  +    + 
Sbjct: 2   TIEIMTFGCRLNSYESEIIRKESTSAGLDKLKD----DTIIFNTCAVTAEAVRQAKQAIR 57

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           + R       +E     ++V GC AQ E +        V++++G +         +   F
Sbjct: 58  KAR-------RENPHARIIVTGCAAQTEAKN-FALMKEVDLILGNEEKLHADSYRQLPDF 109

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRG-VTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
           G    D    V +  E   I     N   G   AF+ +Q GCD  CTFCV+PY RG   S
Sbjct: 110 GIN-HDEKLRVNNIMEVHKIAPHMINALEGRTRAFVQVQNGCDHRCTFCVIPYGRGPSRS 168

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
             +  ++++ +KL+DNG+ EI L G ++ +  G  L G+      +   L  +  L RLR
Sbjct: 169 VPMGIIIEQIKKLVDNGIQEIILTGVDLTS-YGPDLPGKTTLGKLVSTILHHVPDLPRLR 227

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
            ++    ++   LI        +MP+LHL +Q+G + ILK M RRH      +    +R+
Sbjct: 228 LSSIDSIEVDQELINLLTYEKRIMPHLHLSLQAGDNMILKRMKRRHLRENAIEFCQSLRA 287

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
            RP I   +D I GFP ET++ F+ +++L+++ G      F +SPR GTP + M  Q++ 
Sbjct: 288 KRPTIVYGADLIAGFPTETEEMFQNSLNLINECGLTHLHVFPFSPRKGTPAARMP-QINH 346

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
                R   L+K+  +               +L+EK        +GR+       +    
Sbjct: 347 KTIKIRAEKLRKEGEKAYKKHLMHLKNSQQTILVEKDE------IGRTEDYTLTQIKG-- 398

Query: 445 HNIGDIIKVRITDVKISTLYG 465
              G I+K  I     + L  
Sbjct: 399 AKAGTIVKALIIGHDGNKLIA 419


>gi|254486731|ref|ZP_05099936.1| MiaB-like tRNA modifying enzyme [Roseobacter sp. GAI101]
 gi|214043600|gb|EEB84238.1| MiaB-like tRNA modifying enzyme [Roseobacter sp. GAI101]
          Length = 418

 Score =  314 bits (806), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 128/435 (29%), Positives = 199/435 (45%), Gaps = 31/435 (7%)

Query: 33  GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92
           GC++N Y++  M+D+    G E        + +++NTC +  +A  K    + ++R    
Sbjct: 10  GCRLNAYETEAMKDLAQQAGLE--------NAVIINTCAVTAEAVRKARQDIRKLR---- 57

Query: 93  SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYY--RLPELLERARFGK-RV 149
              K   +  ++V GC AQ E E   + +  V+ V+G          + L     G+   
Sbjct: 58  ---KANPNARLIVTGCAAQTEPETFAKMA-EVDAVIGNTEKMVGATWQGLAADFIGESEA 113

Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209
           V  D  +        ++DG   R R   A++ +Q GCD  CTFC++PY RG   S     
Sbjct: 114 VQVDDIMSVTETAGHLIDGFGTRSR---AYVQVQNGCDHRCTFCIIPYGRGNSRSVPAGV 170

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSH 269
           VVD+ ++L+D G  E+ L G ++ +W G  L  E      ++  L  +  L RLR ++  
Sbjct: 171 VVDQIKRLVDKGFNEVVLTGVDLTSW-GADLPSEPKLGDLVMRILRLVPDLPRLRISSID 229

Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329
             ++ D L+KA      LMP+LHL +Q G D ILK M RRH   +  +  +  R +RPD+
Sbjct: 230 SIEVDDNLMKAIATEPRLMPHLHLSLQHGDDMILKRMKRRHLRDDAIRFSEEARKLRPDM 289

Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAE 389
              +D I GFP ETD  F  ++ LV          F YS R GTP + M   V   +  E
Sbjct: 290 TFGADIIAGFPTETDAMFENSLKLVQDCDLTWLHVFPYSARQGTPAARMP-AVQGGLIKE 348

Query: 390 RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGD 449
           R   L+     Q     DA  G++ +VL+E         +GR+         +     G 
Sbjct: 349 RAAQLRAAGDRQVARHLDAQQGRMHDVLMESP------TMGRTAQFTETHFTAPQTE-GA 401

Query: 450 IIKVRITDVKISTLY 464
           II+ RIT  + + L 
Sbjct: 402 IIRARITGQEATHLI 416


>gi|90421124|ref|ZP_01229026.1| conserved hypothetical protein [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90334616|gb|EAS48396.1| conserved hypothetical protein [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 440

 Score =  314 bits (806), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 130/449 (28%), Positives = 195/449 (43%), Gaps = 38/449 (8%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
             + S+GC++N Y++  M+    + G       D    IV NTC +  +A  +    + R
Sbjct: 3   VEIVSFGCRLNTYEAEIMKREAVAAGL----DADPRGAIVFNTCAVTSEAVRQARKQIRR 58

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT------YYRLPELL 140
            R       +E  +  +VV GC AQ E          V+ V+G         Y  LP+  
Sbjct: 59  AR-------RENPEARIVVTGCAAQTEPGR-FAEMGEVDAVLGNDEKLTASAYRALPDFG 110

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
             A    RV D     E     +  ++G         A + +Q GCD  CTFCV+P+ RG
Sbjct: 111 VAAEEKVRVNDIMSVTETAGHMVDAIEG------RARAIVQVQNGCDHRCTFCVIPFGRG 164

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
              S  +   VD+ ++L+  G  E+ L G ++ +W G  L G       +   L  +  L
Sbjct: 165 NSRSVPMGAAVDQVKRLVAAGYNEVVLSGVDMTSW-GADLPGAPKLGQLVQAILRHVPDL 223

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            RLR ++    +    LI+A G    LMP+LHL +Q+G D ILK M RRH+  +      
Sbjct: 224 ARLRLSSIDSVEADPALIEAIGSETRLMPHLHLSLQAGDDMILKRMKRRHSRDDAIGFCT 283

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
            IR+ RPDI   +D I GFP ETD  F  +M LV+  G      F +SPR GTP + M  
Sbjct: 284 DIRAARPDIVYGADIIAGFPTETDAMFENSMKLVEDCGLTHLHVFPFSPREGTPAARMP- 342

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440
           Q+   V  +R   L+ +      +   + VG    VL+E++ +      GR        +
Sbjct: 343 QLPREVVKDRATALRARGETAHRAHLASLVGTRQSVLVERNQR------GRCADFTLCEI 396

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELVV 469
             +    G I+   I   +     G LV 
Sbjct: 397 --EEGLPGSILDAIIVGERG----GRLVA 419


>gi|294664557|ref|ZP_06729900.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292605665|gb|EFF48973.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 363

 Score =  314 bits (806), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 118/381 (30%), Positives = 179/381 (46%), Gaps = 33/381 (8%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC   + DS R+      +GY+ V S D AD++V+NTC   + A  +    +G
Sbjct: 7   KVGFVSLGCPKALVDSERILTQLRVEGYDIVPSYDVADVVVVNTCGFIDSAVTESLDAIG 66

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                         +  V+V GC+ +   E+I    P V  V GPQ Y  + E +  A  
Sbjct: 67  EA---------MNANGKVIVTGCLGKR-PEQIREAYPQVLAVSGPQDYQSVMEAVHAALP 116

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            +          D F  L + D G        A+L I EGC+  C+FC++P  RG  +SR
Sbjct: 117 PR---------HDPFVDL-VPDYGIKLTPRHYAYLKISEGCNHRCSFCIIPSMRGDLVSR 166

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSD---------LLYSLSE 256
            + +V+ EA +L+  GV E+ ++ Q+ +A  G  L   +  + D         L   LSE
Sbjct: 167 PVDEVLREAERLVRGGVKELLVVSQDTSA-YGVDLKYAERPWRDRLYQTRMKALCEGLSE 225

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           +    RL Y   +P       + A G    L+PYL +P Q  S RILK M R     +  
Sbjct: 226 LGVWTRLHYVYPYPHVDDVIPLMAEG---RLLPYLDIPFQHASPRILKLMKRPGAVEKTL 282

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
           + + R +++ P+I + S FIVGFPGETD +F + +D +D+    +  +F YSP  G   +
Sbjct: 283 ERMQRWKAMCPEITVRSTFIVGFPGETDAEFESLLDFLDQAQLDRVGAFAYSPVDGASAN 342

Query: 377 NMLEQVDENVKAERLLCLQKK 397
            + + V E VK ERL     K
Sbjct: 343 ALPDPVPEEVKQERLARFMAK 363


>gi|319899510|ref|YP_004159607.1| hypothetical protein BARCL_1386 [Bartonella clarridgeiae 73]
 gi|319403478|emb|CBI77058.1| conserved protein of unknown function [Bartonella clarridgeiae 73]
          Length = 427

 Score =  314 bits (806), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 116/441 (26%), Positives = 197/441 (44%), Gaps = 24/441 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
              + ++GC++N Y+S  +     S G +++        I+ NTC +  +A  +    + 
Sbjct: 2   TIEIVTFGCRLNSYESEIIRKESTSAGLDKLKDG----AIIFNTCAVTVEAVRQAKQAIR 57

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           + R       +E  +  ++V GC AQ EG++       V++++G +         +R  F
Sbjct: 58  KAR-------RENPNARIIVTGCAAQTEGKK-FSLMKEVDLILGNEEKLHAHSYCQRPDF 109

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRG-VTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
           G    D    V +  E   I     N   G   AF+ +Q GCD  CTFC++PY+RG   S
Sbjct: 110 GIN-HDEKIRVNNIMEVNKIAPHMINALEGRTRAFVQVQNGCDHRCTFCIIPYSRGPSRS 168

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
             +  ++++ ++ + NG+ EI L G ++ +  G  L G+      +   L  +  L RLR
Sbjct: 169 VPMGIIIEQIKQFVGNGIQEIVLTGVDLTS-YGPDLPGKITLGKLVSTILHHVPDLPRLR 227

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
            ++    +    LI        +MPYLHL +Q+G + ILK M RRH      Q    +R+
Sbjct: 228 LSSIDSIEADQELINLLAYEKRIMPYLHLSLQAGDNMILKRMKRRHLRENAIQFCQNLRA 287

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
            RP +   +D I GFP ET++ F+ ++ L+++ G      F +SPR GTP + M  Q++ 
Sbjct: 288 KRPTMVYGADLIAGFPTETEEMFQNSLTLINECGLTYLHVFPFSPREGTPAARMP-QINR 346

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
                R   L+K+  +               +LIE+ G      +GR+       +    
Sbjct: 347 ETIKIRAEKLRKEGEKAYRKHLIHLKNSQQTILIERDG------IGRTEDYTLTQIKGT- 399

Query: 445 HNIGDIIKVRITDVKISTLYG 465
              G I+K  I D     L  
Sbjct: 400 -KAGTIVKALIIDHDGKKLIA 419


>gi|171186225|ref|YP_001795144.1| RNA modification protein [Thermoproteus neutrophilus V24Sta]
 gi|170935437|gb|ACB40698.1| RNA modification enzyme, MiaB family [Thermoproteus neutrophilus
           V24Sta]
          Length = 415

 Score =  314 bits (806), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 127/452 (28%), Positives = 207/452 (45%), Gaps = 49/452 (10%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + +V++YGC +   D+  +       G ER +S ++ADL+++ TC +RE    +  + + 
Sbjct: 3   KIYVETYGCWLAKADAEVVRQRL---GLERADSPEEADLVLVYTCAVREDGEVRQLARIR 59

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +  L             VVAGC+A+     +   +P   ++   Q              
Sbjct: 60  ELAGLGRRM---------VVAGCLARLRPYTVKSAAPGAELLYPSQ-------------- 96

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI---E 202
                  +   E +  RL   +G      GV     +Q GC   CTFC   YTRG     
Sbjct: 97  ------VEGGREREMRRLPRYEG------GVVYVAPLQVGCLGNCTFCATKYTRGGAGYV 144

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQN-VNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
            S S   VV   R+ +  G  E+ L GQ+ +      G  G       L   L E++G  
Sbjct: 145 RSASPDDVVAHVREAVARGAREVYLTGQDVITYGFDAGWRGGWNLPDLLERILREVEGDY 204

Query: 262 RLRYTTSHPRDMS---DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           R+R   S P   +   D L+        +  Y HLPVQSGSDR+L++M RR+T  EYR++
Sbjct: 205 RVRIGMSEPWVFAKFADQLLDVVKRDGRVYRYFHLPVQSGSDRVLRAMGRRYTVGEYREL 264

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           + +IR    D  I++D IVGFPGE +++F  ++ LV+++ + +    ++SPR  T  + M
Sbjct: 265 VRKIRRELGDAFIATDIIVGFPGEAEEEFVESVKLVEELKFDKVHVARFSPRPFTEAAVM 324

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSV 438
             QV +  K  R   L +      +  N   VG+   VL+++   + G +VGR+   + V
Sbjct: 325 PRQVPDAEKKRRSKILSEVAARVALLRNGERVGRREVVLVDEV--DHGLVVGRASDYRQV 382

Query: 439 VLN--SKNHNIGDIIKVRITDVKISTLYGELV 468
           V+   + +  +G  + VRI       LYGE++
Sbjct: 383 VVKRGAGDELMGRFVDVRIAGAGPVYLYGEIL 414


>gi|58584362|ref|YP_197935.1| 2-methylthioadenine synthetase [Wolbachia endosymbiont strain TRS
           of Brugia malayi]
 gi|58418678|gb|AAW70693.1| 2-methylthioadenine synthetase [Wolbachia endosymbiont strain TRS
           of Brugia malayi]
          Length = 411

 Score =  314 bits (806), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 115/440 (26%), Positives = 208/440 (47%), Gaps = 33/440 (7%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V ++GC++N Y+S  +++             +  +++V+++C +  +A  +V   + +I 
Sbjct: 4   VVTFGCRLNFYESELIKEALRKA--------ERENVVVVHSCAVTNEAERQVKQKIRKI- 54

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
                  K   +  ++V GC  Q +  E     P V+ V+G Q   +    L        
Sbjct: 55  ------YKNDPNKEIIVVGCAVQLDP-ESYSNIPGVSKVLGNQDKLKTENYL-------- 99

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           + +    V D     S        K    AF+ +Q GCD  CTFC +   RG   S  ++
Sbjct: 100 LSNNKILVNDNQASKSEPALIDKFKDKSRAFIEVQNGCDHSCTFCSITEARGNNRSVPIN 159

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
            ++++ +  + NG  E+   G ++  + G  L G+      +   L ++  L RLR ++ 
Sbjct: 160 NIIEQIKIFVANGYQEVVFTGVDITDF-GTDLFGKPSLGLMVRRVLKDVPELKRLRLSSI 218

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
              ++ D L+    +    MP+LHL +QSG++ ILK M RRH+  +  +   +++S+R +
Sbjct: 219 DVAEVDDELMDLIVNESRFMPHLHLSLQSGNNLILKRMKRRHSREQVIEFCHKVKSLRSN 278

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           IA  +D I GFP ETD+ F+ T++L+++       +F YS R  TP + M  QV ENV+ 
Sbjct: 279 IAYGADIIAGFPTETDEMFQDTVNLLEETNTVYLHAFPYSKRKNTPAARMP-QVPENVRK 337

Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIG 448
           ER+  L+K  +    +F  + +G    VL+E++       +GR+     V   SK     
Sbjct: 338 ERVKNLRKINKAMMSNFYQSLIGTKQSVLVEQNN------IGRAENFALVKFTSK-IQAK 390

Query: 449 DIIKVRITDVKISTLYGELV 468
            I+K  I  ++   L G ++
Sbjct: 391 SIVKATIIGMESGYLVGSII 410


>gi|298529707|ref|ZP_07017110.1| MiaB-like tRNA modifying enzyme YliG [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298511143|gb|EFI35046.1| MiaB-like tRNA modifying enzyme YliG [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 430

 Score =  314 bits (806), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 110/447 (24%), Positives = 191/447 (42%), Gaps = 28/447 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + +  S GC  N+ D+  +        Y  V+   ++D++++NTC     A E+    + 
Sbjct: 3   KVYTHSLGCPKNMVDTENILSGLKEH-YFAVDRPFESDVVLINTCAFIRPAVEESLETIF 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                     +     L+VV GC+    G  + R  P  ++ V              AR 
Sbjct: 62  SAAQDVKGLSQ---RPLLVVTGCLVSRYGTGLGREIPEADMFVPI------------ARQ 106

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            +      Y +  K E  +        K    A++ I EGC+  C FC +P  RG   SR
Sbjct: 107 AELPGKILYRLGRKVEAEAPGVRHGPFKS--FAYVKISEGCNNRCAFCTIPSIRGKLRSR 164

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
              +V+ EA  LID G  E+ L+ Q+  A  G+ L G +   S L   L+ ++GL+RLR 
Sbjct: 165 PEHEVIQEAGHLIDQGAGELVLVSQDSTA-YGRDL-GCRRGLSSLAEKLAGLEGLLRLRI 222

Query: 266 TTSHPRDMSDCLIKAHGDL-DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
              +P  ++D L+    +L    +PY  +P+Q  +  +LK M R        ++I RIR+
Sbjct: 223 MYLYPSGLNDGLLARLAELGPPFVPYFDVPLQHANPELLKKMGRPFQQDPM-EVIRRIRN 281

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             P  AI +  I G+PGE +  FR  ++ V +        F + P  GT  +    Q+ +
Sbjct: 282 YFPGAAIRTTLITGYPGEEERHFRELLEFVRQARVQHLGVFPFYPEEGTRAAGFPGQIPD 341

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGR----SPWLQSV- 438
            VK ER   + ++ +     +     G+ +++L++  H +  G   GR    +P +  + 
Sbjct: 342 EVKNERQRLIMQEQKRVSREYLKGFPGESLDILVDDPHPEWPGLYTGRAWFQAPEVDGLT 401

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYG 465
            ++      G +++  IT      L  
Sbjct: 402 YISGPGVGPGKMVRAEITASHDYDLEA 428


>gi|296122454|ref|YP_003630232.1| RNA modification enzyme, MiaB family [Planctomyces limnophilus DSM
           3776]
 gi|296014794|gb|ADG68033.1| RNA modification enzyme, MiaB family [Planctomyces limnophilus DSM
           3776]
          Length = 440

 Score =  314 bits (806), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 120/460 (26%), Positives = 210/460 (45%), Gaps = 33/460 (7%)

Query: 13  MVSQIVDQCIVP-QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCH 71
           M S   +    P +   + + GC++N Y++  +++     GY  VN  + ADL  +NTC 
Sbjct: 1   MSSLEPNSAGTPSRTCRLVTLGCKVNQYETQLVKEALARHGYREVNEHEIADLCFVNTCT 60

Query: 72  IREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ 131
           +      +    + ++        K       +V GC       E  R+ P V+ VV   
Sbjct: 61  VTANGESRSRQVVRQLA-------KSNPGTRTIVVGCGVTRSP-ESFRQLPSVHEVV--T 110

Query: 132 TYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCT 191
               LP++L+R                 +  +    G    +    A++ +Q+GC   CT
Sbjct: 111 DRRELPDVLQR-----------------YGVVEFPRGIERFEGRKRAYVKVQDGCALRCT 153

Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW----RGKGLDGEKCTF 247
           +C++P  R   ISR    +  E R+LI NG  EI L G ++  +    R +     +   
Sbjct: 154 YCIIPQVRPHLISREPEDIEREVRQLIANGYQEIILTGVHIGHYGVDLRRRTAGAPRIRL 213

Query: 248 SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307
             L+  L +I G  R+R ++    +M+D  I +    + L P  H  +QSGS+ +L  M 
Sbjct: 214 WHLIDRLDKIAGHWRMRLSSIEAAEMTDEFISSVSSAEHLCPQFHPALQSGSNAVLSRMR 273

Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           RR+T  ++  I+D+++   P    S+D IVGFPGETD++F  T+D+   +G+ +  +F +
Sbjct: 274 RRYTKEKFIDIVDQLKEALPHPGFSTDVIVGFPGETDEEFAETLDVCQNVGFTKIHAFSF 333

Query: 368 SPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKG 426
           S R GTP +   ++V  +V   R+  L+    +   SF +   G  IEV++E  H     
Sbjct: 334 SAREGTPAATFPDRVHGHVINARIKALEDLELQLVQSFGENLKGSRIEVMVESIHPDHPD 393

Query: 427 KLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGE 466
            +VG       V+L     ++G + +  +  V+   L+G+
Sbjct: 394 LVVGTDERYCPVILAGNASDLGQLRETLVIGVRQGMLWGQ 433


>gi|328907267|gb|EGG27033.1| ribosomal protein S12 methylthiotransferase RimO [Propionibacterium
           sp. P08]
          Length = 481

 Score =  314 bits (805), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 132/479 (27%), Positives = 205/479 (42%), Gaps = 46/479 (9%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
              + S GC  N  DS  +     + G++ V+   +A+ IV+NTC   E+A +     L 
Sbjct: 9   TVHLVSMGCARNDVDSEELAARMEAGGFQLVDDPAEAETIVVNTCGFIEQAKKDSVDTLL 68

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
              +LK +    G    VV  GC+A+  G E+    P  N V+G   Y  +   L     
Sbjct: 69  AAADLKGN----GTTTSVVAVGCMAERYGRELAESLPEANAVLGFDDYDDIAGRLRTILD 124

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNR-------------------------------KR 174
           G  +             +S VD    R                               + 
Sbjct: 125 GGSIEARVPRDRRALLPISPVDRPTVRAGVSVPGHGTAPDLQASVAPAAGPRATRRRLET 184

Query: 175 GVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA 234
           G +A L +  GCD+ C FC +P  RG  +SR  +++V+EAR L+D+GV E+ L+ +N ++
Sbjct: 185 GPSAPLKMASGCDRRCAFCAIPRFRGSYLSRPTTEIVEEARWLVDHGVKEVFLVSEN-SS 243

Query: 235 WRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP 294
             GK L G+      LL +L ++ GL  +R +   P ++   LI      + ++PY  L 
Sbjct: 244 SYGKDL-GDLRLLEKLLVNLDQVDGLEWIRVSYLQPAELRPGLIDTMLATNKVVPYFDLS 302

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
            Q  S  +L+ M R   A  +  IID IRS  PD    S+FI+GFPGETD D     D +
Sbjct: 303 FQHASGPLLRRMRRFGDAESFLNIIDSIRSRCPDAGFRSNFIIGFPGETDADIAVLTDFL 362

Query: 355 DKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQII 414
            +     A  F YS   GT G+ +   VDE++   R   L     E      +  +G   
Sbjct: 363 QRARLDAAGIFAYSDEEGTEGAKLDRHVDEDLIGARREVLADLTDELVSQRAEDRIGTRG 422

Query: 415 EVLIEKHGKEKGKLVGRS----PWLQSVV--LNSKNHNIGDIIKVRITDVKISTLYGEL 467
            V++E+  +    +VGR+    P +  VV  +++    +GDI+ V         L    
Sbjct: 423 RVMVEEIDEG---VVGRAEHQGPEVDGVVTLVDAPAVGVGDIVDVEFVGSDGVDLVARP 478


>gi|300871330|ref|YP_003786203.1| 2-methylthioadenine synthetase [Brachyspira pilosicoli 95/1000]
 gi|300689031|gb|ADK31702.1| 2-methylthioadenine synthetase [Brachyspira pilosicoli 95/1000]
          Length = 424

 Score =  314 bits (805), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 141/439 (32%), Positives = 233/439 (53%), Gaps = 22/439 (5%)

Query: 36  MNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRI 95
           MN  DS  + +    +G+ +  + ++AD I++NTC +R  A E+V+S   R++    +R 
Sbjct: 1   MNKADSNSLINSLMQEGFIQTENHENADNIIINTCSVRAHAEERVFS---RVKLFNANRK 57

Query: 96  KEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYS 155
           K   D  +++ GC+AQ   E +      V+ +        + + L+      R  + +Y 
Sbjct: 58  KNKKDTKIIIMGCMAQTSKEHLESL--GVDKIFDVYNEVNIIDYLKDEEVFVRKFNDNYI 115

Query: 156 VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEAR 215
               +          +  +   AF+ I  GC+ +CT+C+VP+TRG  ISR   +++DE +
Sbjct: 116 FNKSY---------VDEDKPHKAFIPITHGCNNWCTYCIVPHTRGKMISRKSGEILDEVK 166

Query: 216 KLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI-----KGLVRLRYTTSHP 270
           +LID G  EITLLGQNVN+  G  +D E   F++LLY + ++     K  V +R+ TSHP
Sbjct: 167 RLIDEGAKEITLLGQNVNS-YGLDIDNE-INFTELLYKIDKVIDEKAKDKVWIRFLTSHP 224

Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330
           +D    L  A   L+ L  ++HLP QSGSDRIL  MNR++T  EY + +  +R    D  
Sbjct: 225 KDFDKELADAIWSLNSLCKHIHLPFQSGSDRILSLMNRKYTKEEYIKKVSFLREHADDFP 284

Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER 390
           IS+D IVG+  ET+++++ T+DL++ IG+ +A+ +KYS R G+       Q D+   A R
Sbjct: 285 ISTDIIVGYADETEEEYQETLDLLESIGFEEAYLYKYSEREGSIAYKKKVQYDKVAGARR 344

Query: 391 LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHN-IGD 449
           L  +    RE         VG+   ++I+   K+    + R+   + V++  +    +GD
Sbjct: 345 LTQIVNFQRELAQKLLSKQVGKKAYIMIDDIAKDNMHYLCRTKENRIVLIKKEKELNMGD 404

Query: 450 IIKVRITDVKISTLYGELV 468
           I    IT++K  TL G L+
Sbjct: 405 IYYCEITEIKNHTLIGNLI 423


>gi|229496636|ref|ZP_04390350.1| conserved hypothetical protein [Porphyromonas endodontalis ATCC
           35406]
 gi|229316533|gb|EEN82452.1| conserved hypothetical protein [Porphyromonas endodontalis ATCC
           35406]
          Length = 445

 Score =  314 bits (805), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 122/434 (28%), Positives = 193/434 (44%), Gaps = 16/434 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +     + GC++N  ++  +       G         AD+ ++NTC +   A  K  + +
Sbjct: 11  KTALFFTLGCKLNFAETSTIGRQLRELGVVLATEGSSADICIINTCSVTSAADRKDRTLI 70

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R+       ++E     VVV GC AQ +GEEIL   P VN+VVG      + E L    
Sbjct: 71  HRV-------VRENPHAAVVVMGCYAQLKGEEILN-IPGVNIVVGAGRKSEVVEHLITFF 122

Query: 145 FGKRVVDTD-YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            G+ V  T+ +    +   L   + G +       FL +Q+GC+  CT+C +P  RG+  
Sbjct: 123 SGEGVTPTNKHHYAGERIHLHRFEEGCSSDDRTRHFLKVQDGCNYGCTYCTIPKARGVSR 182

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           + S++ +V +A ++   G  EI L G N+    G         F DL+ +L ++ G+ R 
Sbjct: 183 NGSIASLVAQAERVAQEGGKEIVLTGVNI----GDFGRSTGEQFVDLVRALDQVNGIERY 238

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R ++  P  +SD L++        MP+ HLP+QSGSD +L  M RR+    +   + RI+
Sbjct: 239 RISSLEPDLLSDELLEVVAQSRSFMPHWHLPLQSGSDTVLALMKRRYRTQLFSDRLARIK 298

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
            + P   I  D IVG  GET + F  ++  ++     Q   F YS R GTP  ++   V 
Sbjct: 299 EMMPAAFIGVDVIVGMRGETLEFFEESLAYLEGQPVTQLHVFSYSERSGTPALSIPLVVS 358

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSV--VLN 441
              K ER   L      +  SF     G+   VL E H    GK+ G +     +     
Sbjct: 359 PEEKKERSKALIDLSNRKLSSFYKEHEGEKRPVLWE-HSCVDGKMYGFTDNYIRLEHEFC 417

Query: 442 SKNHNIGDIIKVRI 455
                 G I + +I
Sbjct: 418 PDIALSGAITQAKI 431


>gi|157736477|ref|YP_001489160.1| MiaB-like tRNA modifying enzyme [Arcobacter butzleri RM4018]
 gi|238065288|sp|A8ERB7|RIMO_ARCB4 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|157698331|gb|ABV66491.1| MiaB-like tRNA modifying enzyme [Arcobacter butzleri RM4018]
          Length = 446

 Score =  314 bits (805), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 106/457 (23%), Positives = 207/457 (45%), Gaps = 32/457 (7%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
            +   + S GC  N+ DS  M        Y+  +   +AD+I++NTC   + A ++  + 
Sbjct: 9   KKTLHMVSLGCTKNLVDSEVMLGRLSD--YQLTDDAQNADVIIVNTCGFIDSAKQESINT 66

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +  +   +        + ++V+AGC+++   EE+ +  P ++V  G   Y R+ EL+   
Sbjct: 67  ILSLHEDRK------NESVLVMAGCLSERYKEELQKELPEIDVFTGVGDYDRIDELVNEK 120

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           R         +   +  ER+              A++ + EGC++ C+FC +P  +G   
Sbjct: 121 RSN--FTSEVFLASETNERV-------ITGSSYHAYVKLSEGCNQACSFCAIPSFKGKLH 171

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR+L  +V E + L+  G  + + + Q+ +++  + LD  K     L+  + +I+G+   
Sbjct: 172 SRTLQSLVKEVKALVAKGYVDFSFVSQDSSSFL-RDLD-IKNGLELLVEEVEKIEGIKTA 229

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R    +P   +  LI    D  V + Y  +P+Q  +  +LK M R     +  ++++ ++
Sbjct: 230 RILYLYPSTTTLSLIDKIADSKVFVNYFDMPLQHITPSMLKIMKRGKGVEQLNELMNHMK 289

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           S  P+  + + FI G PGET+DDF A  + V+   + +A  F YS   GT      ++V+
Sbjct: 290 SK-PNSFVRTTFIAGHPGETEDDFEALCNYVENFKFDRANVFSYSDEEGTTAETRTDKVE 348

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGR----SPWLQSV 438
           + +  ER   L + + +      ++ VG+  EV I+   +E    L  R    +P +   
Sbjct: 349 QELIDERAEVLGEIISQTTQESLESEVGKTFEVYIDGESEEHEYLLSARKTIWAPSIDGE 408

Query: 439 VL-------NSKNHNIGDIIKVRITDVKISTLYGELV 468
           +          +    G I  V+IT++    L   ++
Sbjct: 409 IYINDNELSEGEQIKFGQIYTVKITELVGDKLLATVI 445


>gi|314923015|gb|EFS86846.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes
           HL001PA1]
          Length = 474

 Score =  314 bits (805), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 128/477 (26%), Positives = 203/477 (42%), Gaps = 46/477 (9%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
              + S GC  N  DS  +     + G+  V+   +A+ +V+NTC   E+A +     L 
Sbjct: 2   TVHLVSMGCARNDVDSEELAARMEAGGFRLVDDPAEAETVVVNTCGFIEQAKKDSVDTLL 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
              +L+ +    G    VV  GC+A+  G E+    P  + V+G   Y  +   L     
Sbjct: 62  AAADLRGN----GTTTSVVAVGCMAERYGRELAESLPEADAVLGFDDYGDIAGRLRTILD 117

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKR------------------------------- 174
           G  +             +S VD    R                                 
Sbjct: 118 GGSLETHVPRDRRTLLPISPVDRPIARAEVSVPGHGTAPDLPASVAPESGPRPTRRRLGT 177

Query: 175 GVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA 234
           G +A L +  GCD+ C FC +P  RG  +SR ++++V+EAR L+D+GV E+ L+ +N ++
Sbjct: 178 GPSAPLKMASGCDRRCAFCAIPRFRGSYLSRPIAEIVEEARWLVDHGVKEVFLVSEN-SS 236

Query: 235 WRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP 294
             GK L G+      LL +L ++ GL  +R +   P ++   LI      D ++PY  L 
Sbjct: 237 SYGKDL-GDLRLLEKLLVTLDQVDGLEWIRVSYLQPAELRPGLIDTILAADKVVPYFDLS 295

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
            Q  S  +L+SM R   A  +  IID IRS  P+    S+FI GFPGETD D     D +
Sbjct: 296 FQHASGPVLRSMRRFGDAESFLNIIDSIRSRCPEAGFRSNFITGFPGETDADVAVLADFL 355

Query: 355 DKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQII 414
            +     A  F YS   GT  + +   VDE+V   R   L     E      +  +G   
Sbjct: 356 QRARLDVAGIFAYSDEEGTEAAGLDGHVDEDVITARREDLADLTDELVSQRAEDRIGTRG 415

Query: 415 EVLIEKHGKEKGKLVGRS----PWLQSVV--LNSKNHNIGDIIKVRITDVKISTLYG 465
            V++E+  +    ++GR+    P +   V  +++   ++GDI+ V         L  
Sbjct: 416 RVMVEEIDEA---VIGRAEHQGPEVDGCVTLVDAAAVSVGDIVDVEFVGSDGVDLVA 469


>gi|313837176|gb|EFS74890.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes
           HL037PA2]
 gi|314927803|gb|EFS91634.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes
           HL044PA1]
 gi|314971948|gb|EFT16046.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes
           HL037PA3]
          Length = 474

 Score =  314 bits (805), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 132/479 (27%), Positives = 205/479 (42%), Gaps = 46/479 (9%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
              + S GC  N  DS  +     + G++ V+   +A+ IV+NTC   E+A +     L 
Sbjct: 2   TVHLVSMGCARNDVDSEELAARMEAGGFQLVDDPAEAETIVVNTCGFIEQAKKDSVDTLL 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
              +LK +    G    VV  GC+A+  G E+    P  N V+G   Y  +   L     
Sbjct: 62  AAADLKGN----GTTTSVVAVGCMAERYGRELAESLPEANAVLGFDDYDDIAGRLRTILD 117

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNR-------------------------------KR 174
           G  +             +S VD    R                               + 
Sbjct: 118 GGSIEARVPRDRRALLPISPVDRPTVRAGVSVPGHGTAPDLQASVAPAAGPRATRRRLET 177

Query: 175 GVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA 234
           G +A L +  GCD+ C FC +P  RG  +SR  +++V+EAR L+D+GV E+ L+ +N ++
Sbjct: 178 GPSAPLKMASGCDRRCAFCAIPRFRGSYLSRPTTEIVEEARWLVDHGVKEVFLVSEN-SS 236

Query: 235 WRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP 294
             GK L G+      LL +L ++ GL  +R +   P ++   LI      + ++PY  L 
Sbjct: 237 SYGKDL-GDLRLLEKLLVNLDQVDGLEWIRVSYLQPAELRPGLIDTMLATNKVVPYFDLS 295

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
            Q  S  +L+ M R   A  +  IID IRS  PD    S+FI+GFPGETD D     D +
Sbjct: 296 FQHASGPLLRRMRRFGDAESFLNIIDSIRSRCPDAGFRSNFIIGFPGETDADIAVLTDFL 355

Query: 355 DKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQII 414
            +     A  F YS   GT G+ +   VDE++   R   L     E      +  +G   
Sbjct: 356 QRARLDAAGIFAYSDEEGTEGAKLDRHVDEDLIGARREVLADLTDELVSQRAEDRIGTRG 415

Query: 415 EVLIEKHGKEKGKLVGRS----PWLQSVV--LNSKNHNIGDIIKVRITDVKISTLYGEL 467
            V++E+  +    +VGR+    P +  VV  +++    +GDI+ V         L    
Sbjct: 416 RVMVEEIDEG---VVGRAEHQGPEVDGVVTLVDAPAVGVGDIVDVEFVGSDGVDLVARP 471


>gi|296109521|ref|YP_003616470.1| RNA modification enzyme, MiaB family [Methanocaldococcus infernus
           ME]
 gi|295434335|gb|ADG13506.1| RNA modification enzyme, MiaB family [Methanocaldococcus infernus
           ME]
          Length = 411

 Score =  314 bits (805), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 120/443 (27%), Positives = 209/443 (47%), Gaps = 36/443 (8%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + +V+ YGC +N  D+  +++    +G+E   S+D+A+++++NTC +R +   K+   + 
Sbjct: 2   KVYVEGYGCVLNKADTEIIKESLIKEGFEITESLDEANIVIINTCVVRLETENKMMHRIN 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            + +L           LV+VAGC+ +A  E++          + P+  +R  E+L+    
Sbjct: 62  YLNSL---------GKLVIVAGCLPKALKEKVEGFYH-----IYPKEAHRAGEILKDILT 107

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            K+        ED+ E   +       K  +   L I EGC   C++C+V   RG  IS 
Sbjct: 108 KKK-------KEDRGEEKELYKKLNYLKPKLVTPLPISEGCLGNCSYCIVKIARGKLISY 160

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
               +V +A +L+  G   + +  Q+  A  G          ++LL  L +I+G   +R 
Sbjct: 161 PREFLVRKAEELVKGGAKCLLITAQDT-ACYGLD---RGDNLANLLKDLCQIEGEFIMRV 216

Query: 266 TTSHPRDMSDCL---IKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
              H + +S  L   I+ + + + +  +LHLP+QSG D ILK M R ++  E+  I+   
Sbjct: 217 GMMHAKYLSPILDEIIELYREEEKIGKFLHLPLQSGDDEILKLMGRGYSVDEFISIVKEF 276

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           +    D+  ++D IVGFPGET++ F  T++++ K+        KY+ R GT  + M +Q+
Sbjct: 277 KRKVKDLCFTTDVIVGFPGETEEAFNNTLEVLRKLKPDYIHGAKYTQRKGTEAARM-KQL 335

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
           D  ++  R   L K  RE     N   VG+ +  LI +  K      G +   + V    
Sbjct: 336 DTKIRKRRTEILDKLRRELSYLNNKKYVGREMRTLIIEKNK------GYTENFKVVRFE- 388

Query: 443 KNHNIGDIIKVRITDVKISTLYG 465
           K   +G   KV+I D    TL  
Sbjct: 389 KEQEVGKFKKVKIKDATTFTLRA 411


>gi|281420874|ref|ZP_06251873.1| 2-methylthioadenine synthetase [Prevotella copri DSM 18205]
 gi|281405166|gb|EFB35846.1| 2-methylthioadenine synthetase [Prevotella copri DSM 18205]
          Length = 536

 Score =  314 bits (805), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 118/471 (25%), Positives = 200/471 (42%), Gaps = 41/471 (8%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++    + GC++N  ++     M    G       + AD+ ++NTC + E A  K    +
Sbjct: 74  KKAAYYTLGCKLNFSETSTFGKMLEDMGVITAKRGEKADICLINTCSVTEVADHKCRQAI 133

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R+       ++      V+V GC AQ E E +  +   V++V+G      L + L  A 
Sbjct: 134 HRM-------VRNNPGAFVIVTGCYAQLESENV-SKIEGVDLVLGANEKAHLIQYLSNAW 185

Query: 145 FGKRVVDTDYSVED-----------------------KFERLSIVDGGYNRKRGVTAFLT 181
             K   +   + +                        K + +       +R      FL 
Sbjct: 186 AQKFAQENGLAAQTPQNGDAESSQNGDAASLHQHYSVKTKEIKTFQPSCSRGNRTRYFLK 245

Query: 182 IQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD 241
           +Q+GC+ +CT+C +P+ RG   + S+  +V +  +    G  EI + G N+    G    
Sbjct: 246 VQDGCNYYCTYCTIPFARGNSRNPSIQSLVAQCEQAAAEGGKEIVITGVNI----GDFGQ 301

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
                F DL+ ++ +++G+ R R ++  P    D LI+        MP+ H+P+QSGSD 
Sbjct: 302 TTHERFIDLVKAMDQVEGIKRYRISSLEPDLCDDDLIEYCAQSRAFMPHFHIPLQSGSDE 361

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
           +LK M+RR+    +   ++ I+   PD  I  D +VG  GET + F    + +  +   Q
Sbjct: 362 VLKLMHRRYDKALFAHKVNLIKEKMPDAFIGVDVMVGCRGETPECFEECYEFLKSLPVTQ 421

Query: 362 AFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKH 421
              F YS R GT    +   VDE  K +R   L +   ++   F    +G   EVL EK 
Sbjct: 422 LHVFPYSERPGTAALKIPYVVDEKEKKKRSKRLLELSDQKTQEFYAQYIGTEAEVLFEKA 481

Query: 422 GKEKGKLVGRSPWLQSVVLN---SKNHNIGDIIKVRITD--VKISTLYGEL 467
            + K  + G +     V L+   +K      +IKVR+ D     + L  EL
Sbjct: 482 PRGKA-MHGFTKNYIRVELSPALAKEEYDNQLIKVRLGDFNHDKTALKAEL 531


>gi|301107328|ref|XP_002902746.1| CDK5 regulatory subunit-associated protein 1 [Phytophthora
           infestans T30-4]
 gi|262097864|gb|EEY55916.1| CDK5 regulatory subunit-associated protein 1 [Phytophthora
           infestans T30-4]
          Length = 594

 Score =  314 bits (805), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 137/492 (27%), Positives = 231/492 (46%), Gaps = 70/492 (14%)

Query: 43  RMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIK--EGGD 100
            +  +    GY    + D AD+++LNTC +R+ A  K+++ L  +R +K   ++      
Sbjct: 80  IVRAILLESGYTSAPAADAADVVLLNTCAVRDNAEAKIWNRLESLRQVKAKLLRLQHKKV 139

Query: 101 LLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR-FGKRVVDTDYSVEDK 159
             V V GC+A+   +++L    +V++VVGP  Y  +P LL      G+  V+   S+++ 
Sbjct: 140 QTVGVLGCMAERLKKKLLDSDKMVDLVVGPDAYRDIPNLLRVVLGSGEAAVNVQLSLDET 199

Query: 160 FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLID 219
           +  ++ V          +AF++I  GC+  C++C+VP+TRG E SR ++ +VDE R L D
Sbjct: 200 YADIAPVRAD---PHSPSAFVSIMRGCNNMCSYCIVPFTRGRERSRVMNSIVDEVRALSD 256

Query: 220 NGVCEITLLGQNVNAWRGKGLDGE-----------------------KCTFSDLLYSLSE 256
            GV E+ LLGQNVN++  K  +G                           F+DLL  +S 
Sbjct: 257 QGVKEVVLLGQNVNSYHDKKSEGAAEKGRGYVSSTGFSNMFRSRDAPGFRFADLLDKVSR 316

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           +   +RLR+T+ HP+D  + ++    +   +   +H+P QSGS  +L+ M R ++   Y 
Sbjct: 317 VDPEMRLRFTSPHPKDFPNEVLDLVNERPNICKQIHMPAQSGSTTMLERMRRGYSREAYL 376

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
            ++D +R+  P +AISSDFI GF GET+++   T+ L+ ++ Y QAF F YS R  T  +
Sbjct: 377 ALVDNMRARIPGVAISSDFIAGFCGETEEEHADTISLMRQVCYDQAFMFAYSVRARTHAA 436

Query: 377 -NMLEQVDENVKAERLLCLQKKLREQQVSFNDACV---GQIIEVLIEKHGK----EKGKL 428
             M + V +  K  RL  +     E     N   +    ++  VL++   +    +  KL
Sbjct: 437 HRMEDDVTQEEKLRRLREVIDTFSEVVTRKN--HIEDSDRLHIVLVQGPSRRSTDDDPKL 494

Query: 429 VGRSPWLQSVVL-------------------------------NSKNHNIGDIIKVRITD 457
            G +   +  V                                 S +   GD + VRI +
Sbjct: 495 TGLTDTSKRCVFFNQKMPGSLRAFTKQAGEVASEFLPLPSVASESVHAAPGDYVLVRIRE 554

Query: 458 VKISTLYGELVV 469
               TL+   V 
Sbjct: 555 AGRHTLHATPVA 566


>gi|239833059|ref|ZP_04681388.1| MiaB-like tRNA modifying enzyme [Ochrobactrum intermedium LMG 3301]
 gi|239825326|gb|EEQ96894.1| MiaB-like tRNA modifying enzyme [Ochrobactrum intermedium LMG 3301]
          Length = 427

 Score =  314 bits (805), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 123/441 (27%), Positives = 203/441 (46%), Gaps = 29/441 (6%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
             V ++GC++N Y+S  M+    + G   +        I+ NTC +  +A  +    + +
Sbjct: 3   VEVVTFGCRLNTYESEVMKREADAAGLGELKDG----AIIFNTCAVTAEAVRQARQAIRK 58

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
            R       +E  +  ++V GC AQ E +        V++++G +   +         FG
Sbjct: 59  AR-------RENPEARIIVTGCAAQTEADNFAA-MDEVDLILGNEEKLKSNSYRMLPDFG 110

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRG-VTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
               +    V D  E         +   G   AF+ +Q GCD  CTFC++PY RG   S 
Sbjct: 111 VNQFEKVR-VNDIMEVRETASHMVDAIEGRARAFVQVQNGCDHRCTFCIIPYGRGNSRSV 169

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            +  VVD+ ++L+ NG  E+ L G ++ +  G  L G       +   L+++  L RLR 
Sbjct: 170 PMGAVVDQVKRLVGNGYAEVVLTGVDMTS-YGPDLPGNLRLGKLVKTVLNQVPDLQRLRL 228

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
           ++    +  D L+ A  +   LMP+LHL +Q+G D ILK M RRH   +  +  + +R +
Sbjct: 229 SSIDSIEADDDLMDAIANEKRLMPHLHLSLQAGDDMILKRMKRRHLRDDSIRFCETVRGL 288

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
           RPDI   +D I GFP ET++ F+ ++ +V++ G +    F YS R GTP + M  QV   
Sbjct: 289 RPDIVFGADIIAGFPTETEEMFQNSLKIVEECGLSHLHVFPYSAREGTPAARMP-QVRRE 347

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445
           +  ER   L+ +          A  G +  +L+EK G      + R+       ++    
Sbjct: 348 IVKERAARLRAEGDRAYKKHLGALNGTMQRLLVEKEG------IARTEGFTLASVDGGA- 400

Query: 446 NIGDIIKVRITDVKISTLYGE 466
             G+II+ RI  V      GE
Sbjct: 401 -PGEIIE-RI--VTGHD--GE 415


>gi|170072335|ref|XP_001870154.1| CDK5 regulatory subunit-associated protein 1 [Culex
           quinquefasciatus]
 gi|167868595|gb|EDS31978.1| CDK5 regulatory subunit-associated protein 1 [Culex
           quinquefasciatus]
          Length = 446

 Score =  314 bits (805), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 133/466 (28%), Positives = 216/466 (46%), Gaps = 82/466 (17%)

Query: 36  MNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRI 95
           MN  D+  +  +     Y+R  S+ DAD+++L TC IR+ A   V++ L  +R +K  R 
Sbjct: 1   MNTNDTEIVWSILKGHEYQRTGSIKDADVVLLMTCAIRDGAESTVWNRLKHVRLMKERRE 60

Query: 96  KEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYS 155
            EG                                           RA  G++ ++   S
Sbjct: 61  SEG-------------------------------------------RALQGQKAINVLLS 77

Query: 156 VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEAR 215
           +++ +  +  V      +   TA+++I  GCD  C++C+VP+TRG E SR ++ + +EA 
Sbjct: 78  LDETYADVMPVKLDRKSR---TAYVSIMRGCDNMCSYCIVPFTRGKERSRPVASIREEAL 134

Query: 216 KLIDNGVCEITLLGQNVNAWRG--KGLDGEK-------------------CTFSDLLYSL 254
            L   G+ EITLLGQNVN++R      DGEK                     F++LL  L
Sbjct: 135 HLEAKGIKEITLLGQNVNSYRDLSTESDGEKQASVLAPGFKTVYKTKVGGRRFAELLTEL 194

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
           +E    +R+R+T+ HP+D    +++       +   LHLP QSGS  +L+ M R ++   
Sbjct: 195 AETVPEMRIRFTSPHPKDFPREVLETIARYPNICKNLHLPAQSGSSTVLERMRRGYSREA 254

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
           Y  ++D +R++ P++ +SSDFI GF GE+D +F  T+ L++++GY  AF F YS R  T 
Sbjct: 255 YLNLVDEVRTIVPNVTLSSDFICGFCGESDAEFTETLSLIEQVGYHTAFLFAYSMREKTT 314

Query: 375 GS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRS 432
                 + V ++VK +RL  + K  R      N   VG+   +L+E   K     L GR+
Sbjct: 315 AHRRFSDDVPDSVKQQRLRDMIKVFRVGAERLNAQFVGREELILVEGASKRSPNDLAGRN 374

Query: 433 PWLQSVVLNSKNHNI-------------GDIIKVRITDVKISTLYG 465
                V++   +  +             GD + VRI +     L  
Sbjct: 375 DGNVKVIIPGGDVPVGGEDAGERKTIVSGDFVAVRIVESNSQILKA 420


>gi|260427433|ref|ZP_05781412.1| conserved hypothetical protein [Citreicella sp. SE45]
 gi|260421925|gb|EEX15176.1| conserved hypothetical protein [Citreicella sp. SE45]
          Length = 417

 Score =  314 bits (804), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 126/440 (28%), Positives = 194/440 (44%), Gaps = 38/440 (8%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           VP+     + GC++N Y++  M+ +    G          D +++NTC + ++A  K   
Sbjct: 3   VPK---FTTLGCRLNAYETEAMKALAEEAGV--------GDAVIINTCAVTQEAVRKARQ 51

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL--L 140
            + R+R       +E  D  V+V GC AQ + E        V+ V+G            L
Sbjct: 52  EIRRLR-------RENPDARVIVTGCAAQIDPESFAA-MDEVDAVIGNSEKMSPETWKGL 103

Query: 141 ERARFG---KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197
                G   K  V+   SV +    L  +DG   R R   A++ +Q GCD  CTFC++PY
Sbjct: 104 RSDFIGDTEKVQVNDIMSVTETAGHL--IDGFGTRSR---AYVQVQNGCDHRCTFCIIPY 158

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257
            RG   S     VVD+ ++L+  G  E+ L G ++ +W G  L G       ++  L  I
Sbjct: 159 GRGNSRSVPAGVVVDQIKRLVQKGFNEVVLTGVDLTSW-GADLPGTPRLGDLVMRIL-RI 216

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
             + RLR ++    +  + L+ A      LMP+LHL +Q G D ILK M RRH   +  +
Sbjct: 217 TDVPRLRISSIDSIEADENLMLAIATEPRLMPHLHLSLQHGDDLILKRMKRRHLRDDAIR 276

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
             +  R +RPDI   +D I GFP ET+  F  ++ LV+         F YS R GTP + 
Sbjct: 277 FTEEARRLRPDITFGADIIAGFPTETEAHFENSLKLVEDCHLTWLHVFPYSSRPGTPAAK 336

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQS 437
           +  +V+  +  ER   L++           A  G    VL+E         +GR+     
Sbjct: 337 IPNKVNGTIIKERAARLREAGDVAVQRHLAAQQGVTHRVLMEAPD------MGRTEQFTE 390

Query: 438 VVLNSKNHNIGDIIKVRITD 457
           V +       G I+   IT 
Sbjct: 391 VTMTVPQVE-GAIVTATITG 409


>gi|49474821|ref|YP_032863.1| hypothetical protein BQ13490 [Bartonella quintana str. Toulouse]
 gi|49240325|emb|CAF26807.1| hypothetical protein BQ13490 [Bartonella quintana str. Toulouse]
          Length = 427

 Score =  314 bits (804), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 114/441 (25%), Positives = 196/441 (44%), Gaps = 24/441 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
              + ++GC++N Y+S  +     S G +++ +    D I+ NTC +  +A  KV   + 
Sbjct: 2   TIEIVTFGCRLNSYESEIIRKESASSGLDQLKN----DAIIFNTCAVTAEAVRKVKQAIR 57

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           + +       +E     ++V GC AQ E       +  V++V+G +         +   F
Sbjct: 58  KAK-------RENPHARIIVTGCAAQTEARNFALMT-EVDLVLGNEEKLYAHSYCQLPDF 109

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNR-KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
           G    D    V D  E   I     +  +    AF+ +Q GCD  CTFC++PY RG   S
Sbjct: 110 GIN-HDEKLRVNDIMEVQKIAPHMVSAIEERTRAFVQVQNGCDHRCTFCIIPYGRGPSRS 168

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
             +  V+++ ++L +NG+ E+ L G ++ +  G  L G+      +   L  +  L RLR
Sbjct: 169 VPMGAVIEQIKQLTNNGIQEVILTGVDLTS-YGHDLPGKTTLGKLISTILHHVSDLPRLR 227

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
            ++    +    LI        +MP+LHL +Q+G + ILK M RRH      Q    +R+
Sbjct: 228 LSSIDSIEADQELINLLAYEKRIMPHLHLSLQAGDNMILKRMKRRHLREHAIQFCQDLRA 287

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
            RP +   +D I GFP ET++ F+ ++ LV++        F +SPR GTP + M  Q++ 
Sbjct: 288 KRPTMVYGADLIAGFPTETEEMFQNSLALVNECNLIHLHVFPFSPREGTPAARMP-QINR 346

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
            +   R   L+K   E              ++L+EK+       +GR+       +    
Sbjct: 347 KIVKMRAERLRKAGEEAYQKHLVHLQNSQQKILVEKNE------IGRTEDYTLAQIKG-- 398

Query: 445 HNIGDIIKVRITDVKISTLYG 465
              G I++  I     + L  
Sbjct: 399 VKAGTIVQALIIGHDGNKLIA 419


>gi|332797846|ref|YP_004459346.1| MiaB family RNA modification protein [Acidianus hospitalis W1]
 gi|332695581|gb|AEE95048.1| RNA modification enzyme, MiaB family [Acidianus hospitalis W1]
          Length = 417

 Score =  314 bits (804), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 130/446 (29%), Positives = 225/446 (50%), Gaps = 33/446 (7%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + + ++YGC +N  D+  M  +   + +E VN+ ++AD+IVLNTC +R +  E++ S + 
Sbjct: 2   KVYFETYGCALNKGDTYIMMTLLKQRNHEIVNNPNEADVIVLNTCDVRLETGERMKSRIK 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +R              +VVAGC + AE   +   +P  +++ GPQ   ++ + +E    
Sbjct: 62  ELRKFGKK---------LVVAGCFSGAEPGVVKTLAPEASII-GPQALTKIIDAVE---- 107

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G+++   +    +   R+           G  A + I +GC   C+FC+    R    S 
Sbjct: 108 GEKIFSINAERSEITPRV---------FEGKIAIIPIADGCAGDCSFCITKLARRTLRSY 158

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           S+  +V+  ++ + NG  E+ L GQ+  A  G  L G K   SDLL  +  I+G   +R 
Sbjct: 159 SMRSIVEAVKEAVKNGAVEVELTGQDAAA-YGLDL-GGKIKLSDLLNEVLSIEGDFMIRI 216

Query: 266 TTSHPRDMSDCL---IKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
               P   +  +   ++A  +   L  +LHLPVQSG D +LK MNR++T  EY++++   
Sbjct: 217 GMMTPEQFARDIDGILEAMRN-PKLFKFLHLPVQSGDDNVLKLMNRKYTVDEYKELVKEA 275

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           RS  P+I I++D I+G PGE ++ F  T++L+ +I + +     YS R  T  + M +QV
Sbjct: 276 RSKIPNINITTDIIIGHPGEDENAFENTLELMKEIKFERVHLAMYSIRPNTRSALM-KQV 334

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
            ++VK ER+    K   +  +S +   + +  +V+  + GK+ G ++GR+     V+LN 
Sbjct: 335 PDSVKKERMRIAYKLYEDISLSIHKEYLNKRTKVITTEEGKK-GSIIGRTLNYIPVILNG 393

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
               IG    V I D     L G +V
Sbjct: 394 --VEIGKWYDVEIIDYSFFDLRGTVV 417


>gi|315608055|ref|ZP_07883048.1| 2-methylthioadenine synthetase [Prevotella buccae ATCC 33574]
 gi|315250524|gb|EFU30520.1| 2-methylthioadenine synthetase [Prevotella buccae ATCC 33574]
          Length = 450

 Score =  314 bits (804), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 118/420 (28%), Positives = 194/420 (46%), Gaps = 14/420 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++    + GC++N  ++     +    G       + AD+ ++NTC + E A  K    +
Sbjct: 10  KKAAYYTLGCKLNFSETSTFGKLLSDIGVVAAQKGERADICLINTCSVTEVADHKCRQAI 69

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R+       ++E     VVV GC AQ E E++  R   V++V+G      L + L  A 
Sbjct: 70  HRM-------VRENPGAFVVVTGCYAQLESEKV-SRIDGVDLVLGSNEKADLIQYLNDAF 121

Query: 145 FGKRVVDTDYSVED-KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            G    +  +     K + +       +R      FL +Q+GC+ FCT+C +PY RG   
Sbjct: 122 VGGVRQEALHRHHSVKTKDIKSFQPSCSRGNRTRYFLKVQDGCNYFCTYCTIPYARGFSR 181

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           + S++ +V++AR+    G  EI L G N+    G        +F DL+ +L E++G+ R 
Sbjct: 182 NPSIASLVEQAREAALEGGREIVLTGVNI----GDFGATTHESFLDLVKALDEVEGIERF 237

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R ++  P   SD L++        MP+ H+P+QSGSD +LK M+RR+    +   I+ I+
Sbjct: 238 RISSLEPDLCSDELVEYCSISRAFMPHFHIPLQSGSDEVLKLMHRRYDRALFAHKINLIK 297

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              PD  I  D +VG  GE  + F    D ++ +   Q   F YS R GT   ++   VD
Sbjct: 298 EKMPDAFIGVDVMVGCRGEKPEYFEDCYDFLESLPVTQLHVFPYSERPGTSALSIPYVVD 357

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
           +  K +R+  L      +   F    +G    VL EK  K K  + G +     V L ++
Sbjct: 358 DKEKRQRVKRLLDMSDRKTEEFYAKYIGTESVVLFEKAAKGKA-MHGFTDNYIRVELPAR 416


>gi|27375587|ref|NP_767116.1| hypothetical protein bll0476 [Bradyrhizobium japonicum USDA 110]
 gi|27348724|dbj|BAC45741.1| bll0476 [Bradyrhizobium japonicum USDA 110]
          Length = 417

 Score =  314 bits (804), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 124/444 (27%), Positives = 188/444 (42%), Gaps = 38/444 (8%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
             + ++GC++N +++  +       G          D IV+N+C +  +A  +    + +
Sbjct: 3   VEIVTFGCRLNAFEAEVIRSKAEGAGLV--------DTIVINSCAVTNEAVAQARQSIRK 54

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER---- 142
           ++       +E     +VV GC AQ     +      V+ VVG     R     E     
Sbjct: 55  LK-------RERPGARIVVTGCAAQT-QSRMFADMAEVDRVVGNDDKMRSDAWREARDAF 106

Query: 143 ---ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
              AR    V D     E     +     G  R      F+ +Q GCD  CTFC++P+ R
Sbjct: 107 DIGAREKIAVSDIMAVKEMAPHLVDGFASGLPRV-----FVQVQNGCDHRCTFCIIPFGR 161

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G   S  +  VV++ R L + G  EI L G ++ +  G  L G           L  +  
Sbjct: 162 GNSRSVPMGAVVEQVRALAERGHAEIVLTGVDLTS-YGADLPGAPKLGMLTKQILRHVPE 220

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           L RLR ++    +  + L+ A  D   LMP+LHL +QSG D ILK M RRH   +     
Sbjct: 221 LKRLRISSIDSIEADNDLLDAIADDARLMPHLHLSLQSGDDMILKRMKRRHLRGDAIAFC 280

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
           D++R +RPD+A  +D I GFP ET+  F  ++DLV++ G      F YSPR GTP + M 
Sbjct: 281 DQVRRLRPDVAFGADIIAGFPTETEAMFSRSLDLVEECGLTFLHVFPYSPRPGTPAARMP 340

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV 439
            QV      ER   L+            A +G   +VLIE   +      GR+     V 
Sbjct: 341 -QVAGPEIKERARRLRAAGEAALRQRLQAEIGATRDVLIESESQ------GRTEHYLPVA 393

Query: 440 LNSKNHNIGDIIKVRITDVKISTL 463
           +      +G ++   I       L
Sbjct: 394 IAG--ARVGSVVPRMIVGSDGERL 415


>gi|240139472|ref|YP_002963947.1| MiaB-like tRNA modifying enzyme, putative 2-methylthioadenine
           synthetase [Methylobacterium extorquens AM1]
 gi|240009444|gb|ACS40670.1| MiaB-like tRNA modifying enzyme, putative 2-methylthioadenine
           synthetase [Methylobacterium extorquens AM1]
          Length = 410

 Score =  314 bits (804), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 119/435 (27%), Positives = 190/435 (43%), Gaps = 32/435 (7%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           ++GC++N  +S  +               +  DL+V+NTC +  +A  +    + R+   
Sbjct: 7   TFGCRLNTVESEVLRGHAE-------PDAEGRDLVVVNTCAVTAEAGRQARKAIRRL--- 56

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
                +E     +VV GC A+ E        P V  +VG     R        + G    
Sbjct: 57  ----SRERPGAEIVVTGCGAEVERAS-YAAMPEVARLVGNAAKLRPESW----QSGTAPA 107

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
             D       E   I     + +    AF+ +Q GCD  CTFCV+P+ RG   S  +++ 
Sbjct: 108 PEDIMAVRTAEPTHITTMSGHTR----AFVPVQNGCDHRCTFCVIPFGRGNSRSVPVAEA 163

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270
           V + R+++++G  E+ L G ++ A  G+ LD +      +   L+++  L RLR ++   
Sbjct: 164 VAQVRRIVEHGGREVVLTGVDLTA-YGRDLDSDLSLGRLVRTILAKVPDLARLRLSSIDS 222

Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330
            +    LI A  +   LMP++HL +Q+G D ILK M RRH+  +  ++   +R +RP + 
Sbjct: 223 VEADAELIAAFAEEPRLMPHVHLSLQAGDDLILKRMKRRHSRADAIRLCQTLRDLRPGLV 282

Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER 390
             +D I GFP ET+  F  ++DLV + G      F YSPR  TP + M   V  +V   R
Sbjct: 283 FGADLIAGFPTETEAQFARSLDLVAECGLTHLHVFPYSPRPDTPAARMP-AVPGDVVRAR 341

Query: 391 LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDI 450
              L++          D  VG    VL E+         GR+     V   S+    GDI
Sbjct: 342 AARLRETGAAALARHLDGEVGARRRVLTERGD------TGRTEAFSLVRF-SEPVPAGDI 394

Query: 451 IKVRITDVKISTLYG 465
             V +T      L  
Sbjct: 395 RDVTVTGHDGQALLA 409


>gi|83942143|ref|ZP_00954605.1| MiaB-like tRNA modifying enzyme [Sulfitobacter sp. EE-36]
 gi|83847963|gb|EAP85838.1| MiaB-like tRNA modifying enzyme [Sulfitobacter sp. EE-36]
          Length = 418

 Score =  313 bits (803), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 126/438 (28%), Positives = 193/438 (44%), Gaps = 35/438 (7%)

Query: 33  GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92
           GC++N Y++  M+++    G +        D +++NTC +  +A  K    + ++R    
Sbjct: 10  GCRLNAYETEAMKELAEQAGLK--------DAVIINTCAVTAEAVRKARQDIRKLR---- 57

Query: 93  SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYY--RLPELLERARFGKR-- 148
              K   D  ++V GC AQ E E    +   V+ V+G          + L     G+   
Sbjct: 58  ---KANPDARLIVTGCAAQTEPET-FTKMAEVDAVIGNTEKMVGATWQGLAADFIGETEA 113

Query: 149 -VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
             VD   SV +    L  +DG   R R   A++ +Q GCD  CTFC++PY RG   S   
Sbjct: 114 LQVDDIMSVTETAGHL--IDGFGTRSR---AYVQVQNGCDHRCTFCIIPYGRGNSRSVPA 168

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
             VVD+ ++L+D G  E+ L G ++ +W G  L         ++  L  +  L RLR ++
Sbjct: 169 GVVVDQIKRLVDKGFNEVVLTGVDLTSW-GADLPATPKLGDLVMRILRLVPDLPRLRISS 227

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
               ++ + L++A      LMP+LHL +Q G D ILK M RRH   +  +     R +RP
Sbjct: 228 IDSIEVDENLMQAIATEPRLMPHLHLSLQHGDDMILKRMKRRHLRDDAIRFAQEARKLRP 287

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
           D+   +D I GFP ETD  F  ++ LV          F YS R GTP + M   V+  + 
Sbjct: 288 DMTFGADIIAGFPTETDAMFENSLKLVTDCDLTWLHVFPYSAREGTPAARMP-AVNGTLI 346

Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNI 447
            ER   L+     Q      A  G+  +VL+E         +GR+         +     
Sbjct: 347 KERAAQLRAAGDAQVARHLAAQQGRAHQVLMENP------TMGRTEQFTETHFATPQTE- 399

Query: 448 GDIIKVRITDVKISTLYG 465
           G II   IT      L  
Sbjct: 400 GAIISATITGQNAGHLLA 417


>gi|307329206|ref|ZP_07608371.1| RNA modification enzyme, MiaB family [Streptomyces violaceusniger
           Tu 4113]
 gi|306885105|gb|EFN16126.1| RNA modification enzyme, MiaB family [Streptomyces violaceusniger
           Tu 4113]
          Length = 498

 Score =  313 bits (803), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 121/485 (24%), Positives = 198/485 (40%), Gaps = 49/485 (10%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +   + + GC  N  DS  +     + G+E V    +AD+ V+NTC   E A +     L
Sbjct: 5   RTVALVTLGCARNEVDSEELAGRLAADGWELVEEATEADVAVVNTCGFVEAAKKDSVDAL 64

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
               +LK+     G    VV  GC+A+  G+E+    P  + V+G   Y  + + L    
Sbjct: 65  LEANDLKD----HGRTQAVVAVGCMAERYGKELAEALPEADGVLGFDDYADISDRLRTIL 120

Query: 145 FGKRVVDTDYSVEDKFERLSI----------------------------------VDGGY 170
            G   V   ++  D+ + L I                                       
Sbjct: 121 AGG--VHASHTPRDRRKLLPISPAERQDAASVALPGHAQDTAPEDLPEGVAPASGPRAPL 178

Query: 171 NRK--RGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLL 228
            R+      A + +  GCD+ C+FC +P  RG  ISR  S V+ E R L + GV EI L+
Sbjct: 179 RRRLDSSPVASVKLASGCDRRCSFCAIPSFRGSFISRRPSDVLGETRWLAEQGVKEIMLV 238

Query: 229 GQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLM 288
            +N N   GK L G+      LL  L+ + G+ R+R +   P +M   LI      + + 
Sbjct: 239 SEN-NTSYGKDL-GDIRLLETLLPELAAVDGIERIRVSYLQPAEMRPGLIDVLTSTEKVA 296

Query: 289 PYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFR 348
           PY  L  Q  +  +L++M R      + ++++ IR   P     S+FIVGFPGET+DD  
Sbjct: 297 PYFDLSFQHSAPGVLRAMRRFGDTDRFLELLETIRGKAPQAGARSNFIVGFPGETEDDLA 356

Query: 349 ATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDA 408
                + +        F YS   GT  +    +VD  V AERL  + +   E      + 
Sbjct: 357 ELERFLSEARLDAIGVFGYSDEDGTEAAGYENKVDPEVVAERLERVSRLAEELTAQRAEE 416

Query: 409 CVG---QIIEVLIEKHGKEKGKLVGRSPWLQSVVL--NSKNHNIGDIIKVRITDVKISTL 463
            +G   +++   I+  G   G+   ++P      L        +G +++ ++   +   L
Sbjct: 417 RLGEVVEVLVEEIDDTGAVLGRGAHQAPETDGQTLLSTGGEPEVGRMVEAKVIATEGVDL 476

Query: 464 YGELV 468
             E +
Sbjct: 477 VAEPL 481


>gi|190570899|ref|YP_001975257.1| MiaB-like tRNA modifying enzyme [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|213019415|ref|ZP_03335221.1| MiaB-like tRNA modifying enzyme [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
 gi|190357171|emb|CAQ54586.1| MiaB-like tRNA modifying enzyme [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|212994837|gb|EEB55479.1| MiaB-like tRNA modifying enzyme [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
          Length = 408

 Score =  313 bits (803), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 122/440 (27%), Positives = 219/440 (49%), Gaps = 36/440 (8%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V ++GC++N Y+S  +++       E        +++V+++C +  +A  +V   + +I 
Sbjct: 4   VITFGCRLNFYESELIKEALKKAKRE--------NVVVVHSCAVTNEAERQVKQKIRKI- 54

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
                  K      ++V GC  Q + +      P V+ V+G Q   R    L        
Sbjct: 55  ------YKNDPSKEIIVVGCAVQLDPKS-YSDIPGVSKVLGNQDKLRAENYLLN------ 101

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
             + +  V D      +++G  ++ R   AF+ IQ GC+  CTFC +   RG   S  ++
Sbjct: 102 --NDEILVSDNQVEPILINGFEDKSR---AFIEIQNGCNHSCTFCSITEARGNNRSVPVN 156

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
            ++++ +  I+NG  E+   G ++  + G  L G++   S +   L +I  L RLR ++ 
Sbjct: 157 NIIEQIKIFIENGYQEVVFTGVDITDF-GTDLFGKQSLGSMVRRVLKDIPQLKRLRLSSI 215

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
              ++ D L+    +   LMP+LHL +QSG++ ILK M RRH   +  +   +++S+RP+
Sbjct: 216 DVAEVDDELMDLIANESRLMPHLHLSLQSGNNLILKRMKRRHNREQVIEFCHKMKSLRPN 275

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           IA  +D I GFP ETD+ F+ T+DL+ KI      +F YS R  TP + M  Q+ ENV+ 
Sbjct: 276 IAFGADIIAGFPTETDEMFQDTVDLLKKINVVYLHAFPYSERKNTPAARMP-QISENVRK 334

Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIG 448
           ER+  L++  +E   SF  + +G    VL+E++       +GR+     + L S+     
Sbjct: 335 ERVKHLREINKEMMSSFYQSLLGTEQSVLVEQNN------IGRTENFALIKLTSR-VQAK 387

Query: 449 DIIKVRITDVKISTLYGELV 468
            I+K  +  ++ + L G ++
Sbjct: 388 SIVKAHVKGIENNCLIGNII 407


>gi|29840033|ref|NP_829139.1| MiaB-like tRNA modifying enzyme [Chlamydophila caviae GPIC]
 gi|29834380|gb|AAP05017.1| MiaB-like tRNA modifying enzyme [Chlamydophila caviae GPIC]
          Length = 421

 Score =  313 bits (803), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 118/445 (26%), Positives = 209/445 (46%), Gaps = 34/445 (7%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGY-ERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
            F +   GC++N Y+     D     GY E  +  +  DL ++NTC +   A       +
Sbjct: 9   TFKLVCLGCRVNQYEIQSYRDQLNFLGYREITDPEEPCDLCIVNTCAVTGSAESSGRHAV 68

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            ++        ++  D  +V+ GC+ +A+ E          +V   + +  + ++     
Sbjct: 69  RQV-------CRQNPDAFLVITGCLGEADKEFFNSLERQCLLVSNKEKHQLMEKIF---- 117

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
                     S++D  E       G +R     AF+ +Q+GC+ FC++C++PY RG   S
Sbjct: 118 ---------PSIQDLPEFRIRSFEGKSR-----AFIKVQDGCNSFCSYCIIPYLRGRSRS 163

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R + +++DE   L+  G  E+ + G NV          E  + + L+  + EIKG+ R+R
Sbjct: 164 RPIQEILDEISGLVSQGYQEVVIAGINVG-----DYQDEGKSLAHLIRQVDEIKGIERIR 218

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
            ++  P D+ + L              HL +QSGS+ ILK MNR+++  ++   +D +RS
Sbjct: 219 ISSIDPEDVQEDLRDVLLSGRHTCHSSHLVLQSGSNAILKRMNRKYSRSDFLDCVDALRS 278

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           V P  A ++D IVGFPGETD DF  T+ +++ +G+ +   F +SPR  T       Q+ +
Sbjct: 279 VDPRYAFTTDVIVGFPGETDQDFEDTLRIIEDVGFIKVHIFPFSPRERTKAYTFASQLPQ 338

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK- 443
           +V  ER   L    +E         +G+ + VL+E+   ++G   G SP+   V   +  
Sbjct: 339 SVINERKKHLAHVAKEIARREMAQRIGETVSVLVERI--DQGIAYGHSPYFDMVGFPADS 396

Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468
              +  ++ V I  V+  TL G+ +
Sbjct: 397 TVAVNTLVNVYIDAVEEDTLKGKRI 421


>gi|126463354|ref|YP_001044468.1| MiaB-like tRNA modifying enzyme [Rhodobacter sphaeroides ATCC
           17029]
 gi|126105018|gb|ABN77696.1| MiaB-like tRNA modifying enzyme [Rhodobacter sphaeroides ATCC
           17029]
          Length = 425

 Score =  313 bits (803), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 123/444 (27%), Positives = 197/444 (44%), Gaps = 36/444 (8%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
             + GC++N Y++  M+++  + G          + +V+NTC +  +A  K    + R+R
Sbjct: 6   FSTLGCRLNAYETEAMKELATAAGV--------GNAVVVNTCAVTAEAVRKAKQEIRRLR 57

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA----- 143
                  +E     ++V GC AQ E        P V+ V+G     +       A     
Sbjct: 58  -------RENPQATIIVTGCAAQTEPAT-FSAMPEVDRVIGNTEKMQPATWAAMAPDLIG 109

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
              +  VD   SV +    L     G+ R R   A++ +Q GCD  CTFC++PY RG   
Sbjct: 110 ETERVQVDDILSVRETAGHLI---DGFGRHR---AYVQVQNGCDHRCTFCIIPYGRGNSR 163

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           S     VV++ R+L+D G  E+ L G ++ +W G  L         ++  L  +  L RL
Sbjct: 164 SVPAGVVVEQIRRLVDRGFAEVVLTGVDLTSW-GADLPAAPRLGDLVMRILRLVPDLARL 222

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R ++    +  + L+ A      LMP+LHL +Q G D ILK M RRH   +  +  +  R
Sbjct: 223 RISSIDSIEADEALMGAIATEPRLMPHLHLSLQHGDDLILKRMKRRHLRDDAIRFCEEAR 282

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
            +RPDI   +D I GFP ET+  F  ++ LV++ G      F +SPR GTP + M  Q+ 
Sbjct: 283 RLRPDIVFGADIIAGFPTETEAAFANSLKLVEECGLTFLHVFPFSPRKGTPAARMP-QLA 341

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
             V  ER   L+     + ++  +   G+   VL+E         +GR+     V   + 
Sbjct: 342 GPVIRERAAQLRALGEARLLAHLEGERGRTHRVLMEGP------RLGRTEQFTEVAFAAD 395

Query: 444 NHNIGDIIKVRITDVKISTLYGEL 467
               G I+   +T      L   +
Sbjct: 396 QPE-GRILSATVTGHAEGRLTATV 418


>gi|83953198|ref|ZP_00961920.1| MiaB-like tRNA modifying enzyme [Sulfitobacter sp. NAS-14.1]
 gi|83842166|gb|EAP81334.1| MiaB-like tRNA modifying enzyme [Sulfitobacter sp. NAS-14.1]
          Length = 418

 Score =  313 bits (803), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 126/438 (28%), Positives = 192/438 (43%), Gaps = 35/438 (7%)

Query: 33  GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92
           GC++N Y++  M+++    G +        D +++NTC +  +A  K    + ++R    
Sbjct: 10  GCRLNAYETEAMKELAEQAGLK--------DAVIVNTCAVTAEAVRKARQDIRKLR---- 57

Query: 93  SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL--LERARFGKR-- 148
              K   D  ++V GC AQ E E    +   V+ V+G            L     G+   
Sbjct: 58  ---KANPDARLIVTGCAAQTEPET-FTKMAEVDAVIGNTEKMVGATWKGLAADFIGETEA 113

Query: 149 -VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
             VD   SV +    L  +DG   R R   A++ +Q GCD  CTFC++PY RG   S   
Sbjct: 114 LQVDDIMSVTETAGHL--IDGFGTRSR---AYVQVQNGCDHRCTFCIIPYGRGNSRSVPA 168

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
             VVD+ ++L+D G  E+ L G ++ +W G  L         ++  L  +  L RLR ++
Sbjct: 169 GVVVDQIKRLVDKGFNEVVLTGVDLTSW-GADLPATPKLGDLVMRILRLVPDLPRLRISS 227

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
               ++ + L++A      LMP+LHL +Q G D ILK M RRH   +  +     R +RP
Sbjct: 228 IDSIEVDENLMQAIATEPRLMPHLHLSLQHGDDMILKRMKRRHLRDDAIRFAQEARKLRP 287

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
           D+   +D I GFP ETD  F  ++ LV          F YS R GTP + M   V+  + 
Sbjct: 288 DMTFGADIIAGFPTETDAMFENSLKLVTDCDLTWLHVFPYSAREGTPAARMP-AVNGTLI 346

Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNI 447
            ER   L+     Q      A  G+  +VL+E         +GR+         +     
Sbjct: 347 KERAAQLRAAGDAQVARHLAAQQGRAHQVLMESP------TMGRTEQFTETHFATPQTE- 399

Query: 448 GDIIKVRITDVKISTLYG 465
           G II   IT      L  
Sbjct: 400 GAIISATITGQNAGHLLA 417


>gi|145344300|ref|XP_001416674.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144576900|gb|ABO94967.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 516

 Score =  313 bits (802), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 109/450 (24%), Positives = 201/450 (44%), Gaps = 30/450 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + FV ++GC  N  DS  M       GYE V++ + AD  ++NTC ++  +   + + + 
Sbjct: 39  KIFVHTFGCSHNHSDSEFMAGQLRRYGYELVDAPEKADGWLVNTCTVKNPSQSAMNTVIE 98

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R +    +          V+AGCV Q  G++  +    V++ +G     R+ E +ER   
Sbjct: 99  RGKAANKAM---------VIAGCVPQ--GDKGAKELRDVSL-LGVTQIDRVVEAMERTLA 146

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G    DT   +E K   L  +D    R+      L +  GC   CT+C   + RG   S 
Sbjct: 147 G----DTVRMLEKK--ALPSLDLPKVRRNEFVEILPLSTGCLGACTYCKTKHARGDLGSY 200

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            +S +V    + +  GV E+ L  ++  A  G  L  +       + ++    G V LR 
Sbjct: 201 EISALVSRVEQAMAEGVSEVWLSSEDTGA-YGIDLGTDVAALFRAITAVLPTDGSVMLRL 259

Query: 266 TTSHPRDMSDCLIKAHGD---LDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
             ++P  +   L  A  +      +  ++H+PVQSGS+ +L+ M R +T  E++++ D +
Sbjct: 260 GMTNPPYILAHL-DAVAEAMRHPSVYAWMHIPVQSGSNAVLEGMKREYTVEEFKRVCDTL 318

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
            +  P + I++D I GFPGETD+ ++ TM L+++  + +    ++ PR GTP + M ++V
Sbjct: 319 LAAVPGMVIATDIICGFPGETDEQWQETMSLIEEYKFPEVHISQFYPRPGTPAAKM-KRV 377

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
              +   R   L      +    ++  VG+   V +    ++   LV  +     ++L  
Sbjct: 378 PTQIVKARSRELTALF--ESYMPHEHLVGKTERVWVSDIARDGTSLVAHTKNYTQILLPG 435

Query: 443 KNH----NIGDIIKVRITDVKISTLYGELV 468
                   +G    V I +    +    ++
Sbjct: 436 GEDQRARLMGRSAMVEIYEAARWSCKARVL 465


>gi|315635637|ref|ZP_07890900.1| Fe-S oxidoreductase [Arcobacter butzleri JV22]
 gi|315479934|gb|EFU70604.1| Fe-S oxidoreductase [Arcobacter butzleri JV22]
          Length = 446

 Score =  313 bits (802), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 104/457 (22%), Positives = 204/457 (44%), Gaps = 32/457 (7%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
            +   + S GC  N+ DS  M        Y+  +   +AD+I++NTC   + A ++  + 
Sbjct: 9   KKTLHMVSLGCTKNLVDSEVMLGRLSD--YQLTDDAQNADVIIVNTCGFIDSAKQESINT 66

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +  +   +        + ++V+AGC+++   EE+ +  P ++V  G   Y ++ EL+   
Sbjct: 67  ILSLHEDRK------NESVLVMAGCLSERYKEELQKELPEIDVFTGVGDYDKIDELVNEK 120

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           R         +   +  ER+              A++ + EGC++ C+FC +P  +G   
Sbjct: 121 RSN--FTSEVFLASETNERV-------ITGSSYHAYVKLSEGCNQACSFCAIPSFKGKLH 171

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR+L  +V E + L+  G  + + + Q+ +++  + LD  K     L+  + +I+G+   
Sbjct: 172 SRTLQSLVKEVKALVAKGYVDFSFVSQDSSSFL-RDLD-IKNGLELLIEEVEKIEGIKTA 229

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R    +P   +  LI    D  V + Y  +P+Q  +  +LK M R     +  ++++ ++
Sbjct: 230 RILYLYPSTTTLSLIDKIADSKVFVNYFDMPLQHITPSMLKIMKRGKGVEQLNELMNHMK 289

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           S  P+  + + FI G PGET+DDF      V+   + +A  F YS   GT      ++VD
Sbjct: 290 SK-PNSFVRTTFIAGHPGETEDDFETLCSYVENFKFDRANVFSYSDEEGTTAETRTDKVD 348

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGR----SPWLQSV 438
           + +  ER   L + + +      +  VG+  EV I+   +E    L  R    +P +   
Sbjct: 349 QELIDERAEILGEIISQTTQESLENEVGKTFEVYIDGESEEHEYLLSARKTIWAPSIDGE 408

Query: 439 VL-------NSKNHNIGDIIKVRITDVKISTLYGELV 468
           +          +    G I  V++T++    L   ++
Sbjct: 409 IYINDNELNEGEQIKFGQIYTVKVTELVGDKLLATVI 445


>gi|313203633|ref|YP_004042290.1| miab-like tRNA modifying enzyme [Paludibacter propionicigenes WB4]
 gi|312442949|gb|ADQ79305.1| MiaB-like tRNA modifying enzyme [Paludibacter propionicigenes WB4]
          Length = 436

 Score =  313 bits (802), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 109/434 (25%), Positives = 201/434 (46%), Gaps = 19/434 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++    + GC++N  ++  +      +G+ +V + + AD+ ++NTC + + A  K    +
Sbjct: 10  KKVAFHTLGCKLNFAETSAIGKQLTDEGFAKVKTGEQADICIINTCSVTDTADHKCRQAI 69

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R+        ++  D +++V GC AQ + EE+      V++V+G    + + E +++  
Sbjct: 70  NRLN-------RQHPDAIMIVTGCYAQLKPEEVAA-IDGVDLVLGANEKFNVLEYIQKLD 121

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
             ++          + +R+       +R      FL +Q+GCD FCT+C +PY RG   +
Sbjct: 122 GTEK----SEIHRSEIKRVREFKPSCSRDDRTRYFLKVQDGCDYFCTYCTIPYARGRSRN 177

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
            ++ + V  A + ++ G  EI L G N+    G        +F DL+ +L  I   VR R
Sbjct: 178 ATIPETVAMAMQAVEAGAKEIVLSGVNI----GDFGKSTGESFFDLVKALDTIPADVRFR 233

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
            ++  P  ++D +I         MP+ H+P+QSG++ +L+ M R++    +   ++ I+S
Sbjct: 234 ISSIEPNLLTDEIITYISTSHRFMPHFHIPLQSGTNEVLQLMKRKYNRELFAHKVELIKS 293

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           + P   I  D IVG  GETD+ F  +   +D +  +Q   F YS R GT   ++   V  
Sbjct: 294 LLPHAFIGVDVIVGVRGETDELFEQSCRFIDSLDISQLHVFTYSERAGTKMLDIEYTVSL 353

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVLNSK 443
           N +  R   L     ++  +F    VG    VL E   +  G+ +VG S     V     
Sbjct: 354 NERKRRSNVLHSLSEKKTKAFYQNQVGNTYPVLWE--SRHNGEFMVGFSSNYVKVERQYD 411

Query: 444 NHNIGDIIKVRITD 457
              +  I  V + +
Sbjct: 412 KKLVNTIQIVTLGE 425


>gi|258543518|ref|YP_003188951.1| tRNA 2-methylthioadenosine synthase MiaB [Acetobacter pasteurianus
           IFO 3283-01]
 gi|256634596|dbj|BAI00572.1| tRNA 2-methylthioadenosine synthase MiaB [Acetobacter pasteurianus
           IFO 3283-01]
 gi|256637652|dbj|BAI03621.1| tRNA 2-methylthioadenosine synthase MiaB [Acetobacter pasteurianus
           IFO 3283-03]
 gi|256640706|dbj|BAI06668.1| tRNA 2-methylthioadenosine synthase MiaB [Acetobacter pasteurianus
           IFO 3283-07]
 gi|256643761|dbj|BAI09716.1| tRNA 2-methylthioadenosine synthase MiaB [Acetobacter pasteurianus
           IFO 3283-22]
 gi|256646816|dbj|BAI12764.1| tRNA 2-methylthioadenosine synthase MiaB [Acetobacter pasteurianus
           IFO 3283-26]
 gi|256649869|dbj|BAI15810.1| tRNA 2-methylthioadenosine synthase MiaB [Acetobacter pasteurianus
           IFO 3283-32]
 gi|256652859|dbj|BAI18793.1| tRNA 2-methylthioadenosine synthase MiaB [Acetobacter pasteurianus
           IFO 3283-01-42C]
 gi|256655913|dbj|BAI21840.1| tRNA 2-methylthioadenosine synthase MiaB [Acetobacter pasteurianus
           IFO 3283-12]
          Length = 414

 Score =  313 bits (801), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 119/440 (27%), Positives = 199/440 (45%), Gaps = 31/440 (7%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           + ++GC++N ++S  M +   S            ++I++NTC +  +A  +    + R  
Sbjct: 6   ILTFGCRLNTWESEVMRNHAASLD----------NVIIVNTCAVTGEAERQARQAIRRAH 55

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
                  +E  D  +VV GC AQ    E     P V  V+G +   +       A     
Sbjct: 56  -------RENPDARIVVTGCAAQINP-ESWSDLPGVARVLGNEEKLKAESWSASALSEPL 107

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
            V    + ++    L     G  R     AF+ +Q+GC+  CTFC++P+ RG   S  + 
Sbjct: 108 AVSDIMAAKETAAHLVTEFAGRTR-----AFVQVQQGCNHRCTFCIIPFGRGPSRSVPVG 162

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
            VV++ R L+ +G  E+ L G ++ +W G+ L G+          L  +  L R+R ++ 
Sbjct: 163 AVVEQVRALVQSGYREVVLTGVDMTSW-GEDLPGKPVLGQLCRRVLRLVPELERMRLSSV 221

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
            P ++ + + +   +    MPYLHL +Q+GSD ILK M RRH   +  ++++R R +RPD
Sbjct: 222 DPVEIDEDIWQLLAEEPRFMPYLHLSLQAGSDLILKRMKRRHLVADAARVVERARKLRPD 281

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           I I +D I GFP E +  F  T   + +        F YS R GTP + M   V    + 
Sbjct: 282 IGIGADVIAGFPTEDESLFEETRSFLAQQALPYLHVFPYSERPGTPAARMR-AVPVPERK 340

Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIG 448
            R   L++        + ++ VGQ + VL+E          G S     V L      +G
Sbjct: 341 ARAAQLREVGAASAARYYESLVGQPLRVLMETP------TTGHSEQFAPVRLAQGEAEVG 394

Query: 449 DIIKVRITDVKISTLYGELV 468
           +II ++ T  + + L  E +
Sbjct: 395 EIITLQPTMAESAGLVVERI 414


>gi|220905544|ref|YP_002480856.1| MiaB-like tRNA modifying protein YliG [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
 gi|219869843|gb|ACL50178.1| MiaB-like tRNA modifying enzyme YliG [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
          Length = 442

 Score =  313 bits (801), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 117/448 (26%), Positives = 186/448 (41%), Gaps = 26/448 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + +  S GC  N  DS R+     +     V  M  ADL+ +NTC   + A  +    + 
Sbjct: 11  KVWSLSLGCPKNRVDSERLLGSLGAP-VSHVEHMGRADLVFINTCGFIDPAVRES---VR 66

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEE-ILRRSPIVNVVVGPQTYYRLPELLERAR 144
            + +      +     L+ V GC+    G E +    P V++ +      R P ++  A 
Sbjct: 67  AVLDAGQRLGRCSKKPLLAVGGCMVGRYGAENLAEDLPEVDLWLPTADLDRWPGMVAEAL 126

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
                                  G         A+L I EGC   C FC +P  RG   S
Sbjct: 127 A-----------LPTPPVRMPGGGRLLSTGPSYAWLKIGEGCRHKCAFCTIPSIRGGLHS 175

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
                +VDEAR L+  GV E+ L+ Q++ AW G  L G K     LL  L+ + GL  LR
Sbjct: 176 LPAEYIVDEARALLGQGVRELALVAQDLTAW-GADL-GMKNGLPSLLEKLAALDGLAWLR 233

Query: 265 YTTSHPRDMSDCLIKAHGDLDV-LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
               +P  ++  L+    D    L+PYL +P+Q     +L  M R   A   R+++D +R
Sbjct: 234 LLYLYPSGVTPELLALIRDTGAPLLPYLDIPLQHAHPDVLSRMGRPF-AGNPRRVLDAVR 292

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              P  A+ + FIVG+PGETD+ F +    V++  +     F Y    GT  + + +QV 
Sbjct: 293 QNLPHAALRTTFIVGYPGETDEQFESLCRFVEESAFQHVGVFAYQAEDGTEAATLPDQVP 352

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGR----SPWLQSV 438
           + VK  R   L     +       A VG  ++VL++  H +  G   GR    +P +  +
Sbjct: 353 DAVKQWRRDTLMDIQADISERLLAAHVGSRMQVLVDAPHPEWPGLHSGRVWLQAPEVDGI 412

Query: 439 -VLNSKNHNIGDIIKVRITDVKISTLYG 465
             ++      G +++  I +     L  
Sbjct: 413 TYVSGPGVAPGALVECDIVENTEYDLTA 440


>gi|88658127|ref|YP_507040.1| MiaB family tRNA modification protein [Ehrlichia chaffeensis str.
           Arkansas]
 gi|88599584|gb|ABD45053.1| tRNA modification enzyme, MiaB family [Ehrlichia chaffeensis str.
           Arkansas]
          Length = 412

 Score =  313 bits (801), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 114/439 (25%), Positives = 207/439 (47%), Gaps = 32/439 (7%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V ++GC++N Y+S  +++       +        D+IV+++C +  +A  +V S + ++ 
Sbjct: 4   VITFGCRLNFYESEVIKNNLKKAQLD--------DVIVVHSCAVTNEAERQVRSRIRKL- 54

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
                  ++  ++ ++VAGC  Q    E+    P V  V+G Q   +    L + +    
Sbjct: 55  ------YRDNANVKIIVAGCAVQLNP-ELYVNMPGVIKVLGNQDKLKYESYLAKDKIIVS 107

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
            ++    V        + D          A + IQ GC+  CTFCV+   RG   S  + 
Sbjct: 108 KIENSKEV--------VQDSVKGFSGKSRALIEIQNGCNHECTFCVITKARGNNRSLYIE 159

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
            ++ + +  +DNG  E+   G ++ +  G  + G++   + +   LS +  L RLR ++ 
Sbjct: 160 DIITKVKACVDNGYNEVVFTGVDI-SDFGLDIYGQRVLGTMIKRVLSAVPQLRRLRLSSI 218

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
              ++ D LI    +    MP+LHL +QSG++ ILK M RRH+  +  +  ++I S R +
Sbjct: 219 DVAEIEDDLINIIINEPRFMPHLHLSLQSGNNLILKRMKRRHSREQVIEFCNKITSKRKE 278

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           +   +D IVGFP ET++ F  T+ L+++   +    F YS R GTP + M  QV + VK 
Sbjct: 279 VVFGADIIVGFPTETEEMFNDTVRLIEEANISYLHVFPYSKREGTPAARMP-QVVQEVKK 337

Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIG 448
            R+  L +   ++   F    +     V++EK G       GR+     V     N  + 
Sbjct: 338 RRVKHLLEFAEKRLHDFYSTLLHTKQSVVVEKSG------TGRAENFALVKFLDDNVQLQ 391

Query: 449 DIIKVRITDVKISTLYGEL 467
            I++V I  V+ + L G++
Sbjct: 392 SIVEVEIKRVEGNYLVGQV 410


>gi|237752873|ref|ZP_04583353.1| 2-methylthioadenine synthetase [Helicobacter winghamensis ATCC
           BAA-430]
 gi|229375140|gb|EEO25231.1| 2-methylthioadenine synthetase [Helicobacter winghamensis ATCC
           BAA-430]
          Length = 443

 Score =  313 bits (801), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 104/460 (22%), Positives = 211/460 (45%), Gaps = 32/460 (6%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + ++F + S GC  N+ DS  M     +  YE    + +AD++++NTC   E A ++   
Sbjct: 1   MSKKFHLISLGCTKNLVDSEVMLGCLSA--YENTQDVSEADVVIVNTCGFIEAAKQESIQ 58

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            L      K        + ++V +GC+++   +E+ +  P ++++ G   Y ++  ++++
Sbjct: 59  TLLNALEAKKD------EAILVASGCLSERYAKELKQEIPEIDIITGVGDYDKIDVMIQK 112

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            + G+ +  +   V    E    V  G      + A++ + EGC++ C+FC +P  +G  
Sbjct: 113 RKKGEEICQSQNGVFLANETTKRVISGSK----IHAYIKLSEGCNQKCSFCAIPSFKGKL 168

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK---- 258
            SR+L   + E + L+  G  + + + Q+ +++      G K     L+  + ++     
Sbjct: 169 HSRTLESTLKEVQALVKQGFRDFSFISQDSSSYMRDL--GVKDGLVALIKGIDKLVENGL 226

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
            L   R    +P   S  LI+A  D  V + Y  +P+Q  S  +LK+M R H    ++ +
Sbjct: 227 DLRSARILYLYPSTTSKELIQAICDSKVFVNYFDMPLQHASPSVLKTMGRSH---HFKDL 283

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           +  +R   P+  + + FI+G PGE++ DF      +++  + +   F +S   GT  + M
Sbjct: 284 LKEMRKT-PNSFVRTSFIIGHPGESESDFEELCAFIEEFPFDRMNLFAFSKEEGTKSAEM 342

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGR----SP 433
            EQ+ +     RL  +     +Q  +   A   + I V+IE   +E       R    +P
Sbjct: 343 -EQIPQKTINARLKAINAIFTKQYQADLKALKDEEIVVIIEGKSEESEYFYSARDVRFAP 401

Query: 434 WLQSVVLNSKNHNIGDI----IKVRITDVKISTLYGELVV 469
            +   +L + +   G++     KV+IT+V    + G ++ 
Sbjct: 402 SIDGEILINDSLLEGELEAGYYKVKITEVVGENVLGRVIA 441


>gi|310814822|ref|YP_003962786.1| MiaB-like tRNA modifying enzyme [Ketogulonicigenium vulgare Y25]
 gi|308753557|gb|ADO41486.1| MiaB-like tRNA modifying enzyme [Ketogulonicigenium vulgare Y25]
          Length = 422

 Score =  313 bits (801), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 127/445 (28%), Positives = 198/445 (44%), Gaps = 35/445 (7%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
             + GC++N Y++  M+D+    G            +V+NTC +  +A  K    + ++R
Sbjct: 8   FATLGCRLNAYETEAMKDLAARAGVSGA--------VVVNTCAVTSEAVRKARQEIRKLR 59

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA----- 143
                  +E  D  ++V GC AQ E E        V+ V+G     +       A     
Sbjct: 60  -------REHPDKKIIVTGCAAQTEPET-FTAMGEVDFVIGNTEKMKPETWAAMAPDLIG 111

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           R     VD   SV++    L  +DG   R R   A++ +Q GCD  CTFC++PY RG   
Sbjct: 112 RTEPVQVDDIMSVKETAGHL--IDGFGTRAR---AYVQVQNGCDHRCTFCIIPYGRGNSR 166

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           S     VVD+ ++L+D G  E+ L G ++ +W G  L         ++  L  +  L RL
Sbjct: 167 SVPAGVVVDQIKRLVDRGYNEVVLTGVDLTSW-GADLPATPRLGDLVMRILKLVPDLPRL 225

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R ++    +  + L++A      LMP+LHL +Q+G + ILK M RRH   +  +  +  R
Sbjct: 226 RISSIDSIEADEMLMQAIATEQRLMPHLHLSLQAGDNMILKRMKRRHMREDAIRFCEEAR 285

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
            +RPD+   +D I GFP ET+  F  ++ LV   G      F YSPR GTP + M  QV+
Sbjct: 286 VLRPDMTFGADIIAGFPTETEAMFENSLKLVQDCGLTWLHVFPYSPRKGTPAARMP-QVN 344

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
            N   ER   L+     Q         G    VL+E         +GR+     V+ +S 
Sbjct: 345 GNAIRERAARLRVAGDAQVAVHLAQQQGVQHRVLME------NARMGRTAQFTEVIFDSD 398

Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468
               G I+   +  +  + L    +
Sbjct: 399 QPE-GQIVNAEVMGIAGNQLTARAL 422


>gi|222628903|gb|EEE61035.1| hypothetical protein OsJ_14875 [Oryza sativa Japonica Group]
          Length = 613

 Score =  313 bits (801), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 112/433 (25%), Positives = 199/433 (45%), Gaps = 24/433 (5%)

Query: 38  VYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKE 97
             DS  M     + GY      + ADL ++NTC ++  +   + + + + ++        
Sbjct: 58  QSDSEYMSGQLSAFGYAITEEPEGADLWLINTCTVKNPSQSAMTTLISKCKSANKP---- 113

Query: 98  GGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVE 157
                +VVAGCV Q   +  L+    ++ V+G Q   R+ E++E    G  V        
Sbjct: 114 -----LVVAGCVPQGSRD--LKELEGIS-VIGVQQIDRVVEVVEETLKGHEVRLLSRKT- 164

Query: 158 DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKL 217
                L  +D    RK      L I  GC   CT+C   + RG   S ++  +VD  + +
Sbjct: 165 -----LPSLDLPKVRKNKFIEILPINVGCLGACTYCKTKHARGHLGSYTIESLVDRVKIV 219

Query: 218 IDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCL 277
           +  GV EI L  ++  A  G+ +        + + +         LR   ++P  + + L
Sbjct: 220 VSEGVREIWLSSEDTGA-YGRDIGTNLPNLLNGIAAELPADRSTMLRIGMTNPPFILEHL 278

Query: 278 --IKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDF 335
             I +      +  +LH+PVQSGSD +L +MNR +T  E+R+++D +  + P + I++D 
Sbjct: 279 KEIASVLCHPCVYSFLHVPVQSGSDAVLTAMNREYTVSEFRRVVDTLCELVPGMQIATDI 338

Query: 336 IVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQ 395
           I GFPGETD+DF  T++LV +  + Q    ++ PR GTP + M ++V      +R   L 
Sbjct: 339 ICGFPGETDEDFSQTVNLVKQYLFPQVHISQFYPRPGTPAARM-KKVPSVEVKKRSRELT 397

Query: 396 KKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRI 455
                +  S      G++  + I +   +   LVG +     V++ + +  +G    V+I
Sbjct: 398 SVF--ESFSPYQGMEGKVERIWITEIATDGVHLVGHTKGYIQVLVIAPDSMLGTSADVKI 455

Query: 456 TDVKISTLYGELV 468
           T V   +++GE++
Sbjct: 456 TSVGRWSVFGEVI 468


>gi|302335746|ref|YP_003800953.1| SSU ribosomal protein S12P methylthiotransferase [Olsenella uli DSM
           7084]
 gi|301319586|gb|ADK68073.1| SSU ribosomal protein S12P methylthiotransferase [Olsenella uli DSM
           7084]
          Length = 456

 Score =  313 bits (801), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 119/448 (26%), Positives = 205/448 (45%), Gaps = 22/448 (4%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
             + GC  N  D+ RM  +  + G++ V  +DDAD++++NTC     A  +       + 
Sbjct: 20  FVTLGCAKNEVDTDRMRALLINAGFDEVRDVDDADVVIINTCSFLASATSESIEATLELA 79

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
           +  +  ++      +V+ GCV    G E+  + P V   V       +  ++        
Sbjct: 80  DDVSEGVRRRP---IVMCGCVPSRYGAELAAQLPEVAAFVRADEEDGIVAVVRDVLG--- 133

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           +    +S E     L  V+       G +A++ I EGCD+FC FC +P  RG   SR   
Sbjct: 134 MGGASFSNEATSRALRTVE-------GASAYVKISEGCDRFCAFCAIPRIRGRYASRPEG 186

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV-RLRYTT 267
           +++ E  +L++ G  E+ L+GQ+   W G  L G +     L    + ++     +R   
Sbjct: 187 EILSEVERLMEGGAREVVLIGQDTGIW-GSDLGGGRTLAWLLREVAAAVRPYGAWVRVLY 245

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
             P  M+D LI    D + ++ Y+ +P+Q   +R+L SM R  +    R + DR+RS  P
Sbjct: 246 LQPEGMTDELIATIRDTEEVLSYIDIPIQHCDERVLASMGRTGSIDRLRALFDRLRSEIP 305

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
            + + +  +VGFPGETDD     +D   +  +     F YS   GT  + M  QV E+VK
Sbjct: 306 GMVLRTTGMVGFPGETDDQADELLDFFREQEFDYMSVFSYSREEGTKAARMDGQVPEDVK 365

Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIE--KHGKEKGKLVGR----SPWLQS-VVL 440
            +R   L     +   +     VG++++V+I+  +   +  +LVG     +P     V +
Sbjct: 366 LDRTQRLLDVAEQLGFAATARHVGEVVDVIIDGVEDAGDGPELVGHAWFQAPDCDGAVHI 425

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
            S    +G+ + VR+ D     L GE+V
Sbjct: 426 ASGEATVGERVCVRLVDSFCYELVGEMV 453


>gi|327310209|ref|YP_004337106.1| MiaB family RNA modification protein [Thermoproteus uzoniensis
           768-20]
 gi|326946688|gb|AEA11794.1| RNA modification enzyme, MiaB family [Thermoproteus uzoniensis
           768-20]
          Length = 416

 Score =  313 bits (801), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 128/451 (28%), Positives = 214/451 (47%), Gaps = 48/451 (10%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R +V++YGC +   D+  +       G     S  DADL+++ TC +RE    +    LG
Sbjct: 2   RIYVETYGCWLAKADAQIL---LQRLGGAVAESPRDADLVLVYTCAVREDGEVRQLRRLG 58

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           ++ +             +VVAGC+A+A    I + +    ++             E+   
Sbjct: 59  QLAS---------ESKRLVVAGCLAKARPYTIRQVAKNAELL-----------YPEQVEG 98

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI---E 202
           G+    +     D                G+   + +Q GC   CTFC+  YTRG     
Sbjct: 99  GEGRSMSVLPEPD---------------GGLIYTVPLQVGCLGNCTFCITKYTRGGAGYV 143

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS-LSEIKGLV 261
            S     VV+  +K +  G  EI L GQ+V  +             DLL   LS+++G  
Sbjct: 144 KSAPPDLVVEYVKKAVAKGAKEIYLTGQDVITYGFDARWRRGWNLPDLLEKILSQVEGDY 203

Query: 262 RLRYTTSHPRDM---SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           R+R   S P      +D ++      + +  Y HLPVQSGSD +L+ M RR+TA EYR +
Sbjct: 204 RIRIGMSEPWVFGKFADAILDIVKRDERVYRYFHLPVQSGSDEVLRRMGRRYTADEYRGL 263

Query: 319 IDRI-RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
           I +I R +  D+ +++D IVGFPGET++DFRAT+ L++++ + +    +YS R  T  S 
Sbjct: 264 ISKIKRELNDDVFVATDVIVGFPGETEEDFRATLRLMEELEFDKVHVARYSRRPFTEASV 323

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQS 437
           M EQ+ + VK +R     +   +   + N   +G+ ++VL+++   + G +VGR+P  + 
Sbjct: 324 MPEQIPDAVKKQRSKIASELALKIAHARNSRLIGRRLKVLVDEV--DHGLVVGRAPDYRQ 381

Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           VV+      +G  ++V I   +   L+ + V
Sbjct: 382 VVVGRGEGPLGSFLEVEIERAEPVYLWAKGV 412


>gi|294782589|ref|ZP_06747915.1| Fe-S oxidoreductase [Fusobacterium sp. 1_1_41FAA]
 gi|294481230|gb|EFG29005.1| Fe-S oxidoreductase [Fusobacterium sp. 1_1_41FAA]
          Length = 439

 Score =  313 bits (801), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 118/445 (26%), Positives = 227/445 (51%), Gaps = 20/445 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++    + GC++N Y++  +++    +GYE V   D +D+ ++N+C +   A  K  + L
Sbjct: 5   KKVAFHTLGCKVNQYETESIKNQLIKRGYEEVPFEDKSDIYIINSCTVTSIADRKTRNML 64

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R +       K   +  V+V GC AQ    EIL     V+ V+  +    +   +    
Sbjct: 65  RRAK-------KINPEAKVIVTGCYAQTNSREIL-EIEDVDFVIDNKNKSNIVNFVGAIE 116

Query: 145 --FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
               +R  + +   E +++           +    A++ IQ+GC+ FC++C +P+ RG  
Sbjct: 117 DISFEREKNGNIFQEKEYQEYEFATL----REMTRAYVKIQDGCNHFCSYCKIPFARGKS 172

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR    ++ E  KL+++G  E+ L+G +++A  G+  + +K +F  LL  + +IK L R
Sbjct: 173 RSRKKENILKEIEKLVEDGFKEVILIGIDLSA-YGEDFE-KKDSFESLLEDILKIKDLKR 230

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R  + +P  +SD  I    +   LMP+LH+ +QS  D +LK+M R + +   R+ + ++
Sbjct: 231 VRIGSVYPDKISDKFIDLFKN-KNLMPHLHISLQSCDDTVLKNMRRNYGSSLIRESLLKL 289

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           +S   ++  ++D IVGFP E D  F+ T +++ +I ++    F+YS R GT  SNM  +V
Sbjct: 290 KSKVKNMEFTADVIVGFPKEDDSMFQNTRNVIKEIEFSGLHIFQYSDREGTIASNMDSKV 349

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
           D   K +R   L +  +E  +   +  +G+++E  +    +++G+  G S     V   S
Sbjct: 350 DAKTKKQRADSLDQLKQEMILESREKYLGEVLE--VLVEEEKEGEYFGYSQNYLRVKFKS 407

Query: 443 KN-HNIGDIIKVRITDVKISTLYGE 466
           +  + I ++I ++I  ++   L GE
Sbjct: 408 EEKNLINELINIKIKSIENDILIGE 432


>gi|332559404|ref|ZP_08413726.1| MiaB-like tRNA modifying enzyme [Rhodobacter sphaeroides WS8N]
 gi|332277116|gb|EGJ22431.1| MiaB-like tRNA modifying enzyme [Rhodobacter sphaeroides WS8N]
          Length = 425

 Score =  313 bits (801), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 124/444 (27%), Positives = 199/444 (44%), Gaps = 36/444 (8%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
             + GC++N Y++  M+++  + G   V++      +V+NTC +  +A  K    + R+R
Sbjct: 6   FSTLGCRLNAYETEAMKELATAAG---VDNA-----VVVNTCAVTAEAVRKAKQEIRRLR 57

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA----- 143
                  +E     ++V GC AQ E        P V+ V+G     +       A     
Sbjct: 58  -------RENPQATIIVTGCAAQTEPAT-FSAMPEVDRVIGNTEKMQPATWAAMAPDLIG 109

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
              +  VD   SV +    L     G+ R R   A++ +Q GCD  CTFC++PY RG   
Sbjct: 110 ETERVQVDDILSVRETAGHLI---DGFGRHR---AYVQVQNGCDHRCTFCIIPYGRGNSR 163

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           S     VV++ R+L+D G  E+ L G ++ +W G  L         ++  L  +  L RL
Sbjct: 164 SVPAGVVVEQIRRLVDRGFAEVVLTGVDLTSW-GADLPAAPRLGDLVMRILRLVPDLARL 222

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R ++    +  + L+ A      LMP+LHL +Q G D ILK M RRH   +  +  +  R
Sbjct: 223 RISSIDSIEADEALMGAIATEPRLMPHLHLSLQHGDDLILKRMKRRHLRDDAIRFCEEAR 282

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
            +RPDI   +D I GFP ET+  F  ++ LV++ G      F +SPR GTP + M  Q+ 
Sbjct: 283 RLRPDIVFGADIIAGFPTETEAAFANSLKLVEECGLTFLHVFPFSPRQGTPAARMP-QLA 341

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
             V  ER   L+     + ++  +   G+   VL+E         +GR+     V   + 
Sbjct: 342 GPVIRERAAQLRTLGEARLLAHLEGERGRTHRVLMEGP------RLGRTEQFTEVAFAAD 395

Query: 444 NHNIGDIIKVRITDVKISTLYGEL 467
               G I+   +T      L   +
Sbjct: 396 QPE-GRILSATVTGHAEGRLTATV 418


>gi|53803983|ref|YP_114150.1| hypothetical protein MCA1711 [Methylococcus capsulatus str. Bath]
 gi|53757744|gb|AAU92035.1| conserved hypothetical protein [Methylococcus capsulatus str. Bath]
          Length = 436

 Score =  313 bits (801), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 131/436 (30%), Positives = 200/436 (45%), Gaps = 26/436 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R  ++S GC++N  +       F + G+  V+   DADLIVLN+C +  +A  K    + 
Sbjct: 2   RINLQSLGCRLNEAELESWAREFQAAGHRLVSETGDADLIVLNSCAVTAEAVRKSRQMIR 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R + L            +V++GC A   G+E       V++VV      RL E+  R   
Sbjct: 62  RTQRL-------SPRARLVLSGCYATLHGDEAAAL--GVDLVVSNADKSRLVEIAARELA 112

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                  +   E   E          R+R   AF+ +Q+GC   CTFC+V   RG E SR
Sbjct: 113 ------LEAMPEFSTEPGEAALFALGRQR---AFVKVQDGCRYRCTFCIVTVARGEERSR 163

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
             ++V+ E R+L   GV E+ L G ++    G  L         L+ S+ +   + RLR 
Sbjct: 164 LPAEVIREIRRLQAEGVQEVVLTGVHLGG-YGSDLGLP---LDALIRSILQETEIPRLRL 219

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
            +  P D+         +    MP+LHLP+QSGSD +LK M RR  + E+ ++ D  R  
Sbjct: 220 GSLEPWDLPPGFFDLF-ENPRFMPHLHLPLQSGSDTVLKRMARRCKSEEFARLADHARRQ 278

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            PDI I++D IVGFPGET+ ++  ++  ++ IG+     F YS R GT  + M   V   
Sbjct: 279 VPDINITTDIIVGFPGETEREWEESLQFIETIGFGDIHVFTYSVREGTKAAAMGGHVPAE 338

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN- 444
           +K ER   L +    Q+ +     VG+ + VL E   +  G   G +P    V + +   
Sbjct: 339 IKKERSRVLHELALGQKRALLGRFVGREMPVLWE--NRRDGADRGYTPNYLRVAIQTPET 396

Query: 445 HNIGDIIKVRITDVKI 460
                I  VR+  V  
Sbjct: 397 GLTNRITPVRLVKVDA 412


>gi|322795992|gb|EFZ18616.1| hypothetical protein SINV_04486 [Solenopsis invicta]
          Length = 503

 Score =  312 bits (800), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 124/369 (33%), Positives = 204/369 (55%), Gaps = 28/369 (7%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
            + K YGCQMN  D+  +  +  S GY+    ++DAD+++L TC IR+ A +K+++ L  
Sbjct: 125 VYFKIYGCQMNENDADIIWSVLKSHGYKHTQYLEDADIVLLITCAIRDNAEQKIWNKLEN 184

Query: 87  IRNLKNSRIK-EGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           +  ++N   +  G  + + + GC+A+    +IL R  +V+V+ GP +Y  LP LL     
Sbjct: 185 LNGIRNKIKRITGRSMKIGLLGCMAERLKTKILDRGKLVDVIAGPDSYKDLPRLL-AVTD 243

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            +  ++   S ++ +  ++ +      +    A+++I  GCD  CT+C+VP+TRG E SR
Sbjct: 244 NETAINVVLSFDETYADVTPIRLN---QDSTGAYVSIMRGCDNMCTYCIVPFTRGRERSR 300

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRG--------------KGLDGEKC------ 245
            ++ +++E R+L D GV EITLLGQNVN++R                   G K       
Sbjct: 301 PVASILEEVRQLSDQGVKEITLLGQNVNSYRDLSKSEFVLSVNTDTHLAKGFKTVYKNKK 360

Query: 246 ---TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
               FSDLL  +S I   +R+R+T+ HP+D  D ++    +   +   +HLP QSG+  I
Sbjct: 361 GGLRFSDLLDQVSLINPEIRIRFTSPHPKDFPDEVLHLIAERPNICKQIHLPAQSGNSII 420

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           L+ M R +T   Y  ++  IR + P+I  SSDFI GF GET++ F+ T+ L++++ Y  A
Sbjct: 421 LERMRRGYTREAYLDLVYHIRDILPNINFSSDFIAGFCGETEEQFQDTLSLIEEVKYNCA 480

Query: 363 FSFKYSPRL 371
           + F YS R 
Sbjct: 481 YLFAYSMRE 489


>gi|68171458|ref|ZP_00544845.1| Protein of unknown function UPF0004:MiaB-like tRNA modifying enzyme
           [Ehrlichia chaffeensis str. Sapulpa]
 gi|67999119|gb|EAM85782.1| Protein of unknown function UPF0004:MiaB-like tRNA modifying enzyme
           [Ehrlichia chaffeensis str. Sapulpa]
          Length = 412

 Score =  312 bits (800), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 114/439 (25%), Positives = 207/439 (47%), Gaps = 32/439 (7%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V ++GC++N Y+S  +++       +        D+IV+++C +  +A  +V S + ++ 
Sbjct: 4   VITFGCRLNFYESEVIKNNLKKAQLD--------DVIVVHSCAVTNEAERQVKSRIRKL- 54

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
                  ++  ++ ++VAGC  Q    E+    P V  V+G Q   +    L + +    
Sbjct: 55  ------YRDNANVKIIVAGCAVQLNP-ELYVNMPGVIKVLGNQDKLKYESYLAKDKIIVS 107

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
            ++    V        + D          A + IQ GC+  CTFCV+   RG   S  + 
Sbjct: 108 KIENSKEV--------VQDSVKGFSGKSRALIEIQNGCNHECTFCVITKARGNNRSLYIE 159

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
            ++ + +  +DNG  E+   G ++ +  G  + G++   + +   LS +  L RLR ++ 
Sbjct: 160 DIITKVKACVDNGYNEVVFTGVDI-SDFGLDIYGQRVLGTMIKRVLSAVPQLRRLRLSSI 218

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
              ++ D LI    +    MP+LHL +QSG++ ILK M RRH+  +  +  ++I S R +
Sbjct: 219 DVAEIEDDLINIIINEPRFMPHLHLSLQSGNNLILKRMKRRHSREQVIEFCNKITSKRKE 278

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           +   +D IVGFP ET++ F  T+ L+++   +    F YS R GTP + M  QV + VK 
Sbjct: 279 VVFGADIIVGFPTETEEMFNDTVRLIEEANISYLHVFPYSKREGTPAARMP-QVVQEVKK 337

Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIG 448
            R+  L +   ++   F    +     V++EK G       GR+     V     N  + 
Sbjct: 338 RRVKHLLEFAEKRLHDFYSTLLHTKQSVVVEKSG------TGRAENFALVKFLDDNVQLQ 391

Query: 449 DIIKVRITDVKISTLYGEL 467
            I++V I  V+ + L G++
Sbjct: 392 SIVEVEIKRVEGNYLVGQV 410


>gi|303243568|ref|ZP_07329910.1| MiaB-like tRNA modifying enzyme [Methanothermococcus okinawensis
           IH1]
 gi|302486129|gb|EFL49051.1| MiaB-like tRNA modifying enzyme [Methanothermococcus okinawensis
           IH1]
          Length = 428

 Score =  312 bits (800), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 118/453 (26%), Positives = 230/453 (50%), Gaps = 36/453 (7%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ +++ YGC +N  D++ +++   + + ++ V + +DAD++++NTC +R +   K+ S 
Sbjct: 2   KKIYIEGYGCTLNAADTIIIKNSIVTFKDFQIVQNPEDADVVIINTCAVRLETEHKMISR 61

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +   ++L            VVVAGC+ +A  E++       +V++ P+  +   +++   
Sbjct: 62  IKHFKSLNKK---------VVVAGCMPKALREKVEDIG---DVLIMPKEAHLSGKIVHDY 109

Query: 144 RFGKRVV-----DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
                       +++  ++DK + L+      N +  +   L I EGC   CT+C+V   
Sbjct: 110 TTYNHCNIGGNNNSNVDIDDKLKYLTPT----NPENSLIMPLPISEGCIGKCTYCIVKVA 165

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258
           RG  IS + + ++ +A + I+ GV  I +  Q+  A  G   +    T  +L+  ++ I 
Sbjct: 166 RGRLISYNRNLLIKKAEEFINKGVKHILITSQDT-ACYGFDKND---TLPNLINDIASID 221

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           G   +R    H ++++  + +       D +  +LHLP+QSG D++LK M R +T  E+ 
Sbjct: 222 GEFDMRIGMMHAKNVTQIMDELIASYQNDKVSKFLHLPIQSGDDKVLKDMKRGYTVDEFI 281

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
            I++  +    D+  ++D IVGFP E +++F  T++++ K+        KY+ R  T  +
Sbjct: 282 DIVNEFKRKVKDLNFNTDVIVGFPTEKEENFENTLEVLKKLNPDYIHGAKYTQRRHTEAA 341

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQ 436
            + +QVD  V+ +R   L K  RE     N   +G+ ++VLI ++ K      G +   +
Sbjct: 342 KL-KQVDTKVRKKRSEILDKLRRELSYKNNKNYIGKTLKVLITENNK------GIAHNCK 394

Query: 437 SVVLNSK-NHNIGDIIKVRITDVKISTLYGELV 468
            V  NS  N  IG+  K++ITD K   L+GE++
Sbjct: 395 VVKFNSDKNIKIGEFRKIKITDAKTFGLFGEIL 427


>gi|62184901|ref|YP_219686.1| hypothetical protein CAB260 [Chlamydophila abortus S26/3]
 gi|62147968|emb|CAH63716.1| conserved hypothetical protein [Chlamydophila abortus S26/3]
          Length = 421

 Score =  312 bits (800), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 118/445 (26%), Positives = 206/445 (46%), Gaps = 34/445 (7%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD-DADLIVLNTCHIREKAAEKVYSFL 84
            F +   GC++N Y+     D     GY  +   +   DL ++NTC +   A       +
Sbjct: 9   TFKLVCLGCRVNQYEIQSYRDQLNFLGYREITDPEIPCDLCIVNTCAVTGSAESSGRHAV 68

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            ++        ++  D L+VV GC+ +A+ E          +V     +  + ++     
Sbjct: 69  RQV-------CRQNPDALLVVTGCLGEADKEFFYSLDRQCLLVSNKDKHQLMEKIF---- 117

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
                     S++D  E       G +R     AF+ +Q+GC+ FC++C++PY RG   S
Sbjct: 118 ---------PSIQDLPEFRIRSFSGKSR-----AFIKVQDGCNSFCSYCIIPYLRGRSRS 163

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R + ++++E   L+  G  E+ + G NV  ++ +G      + + L+  + EI G+ R+R
Sbjct: 164 RPVQEILEEISGLVSQGYREVVIAGINVGDYQDQG-----KSLAYLISQVDEIPGIERIR 218

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
            ++  P D+ D L              HL +QSGS+ ILK MNR+++  ++   ++ +RS
Sbjct: 219 ISSIDPEDVQDDLRDVLLSGKHTCHSSHLVLQSGSNAILKRMNRKYSRGDFLDCVEALRS 278

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             P    ++D IVGFPGETD DF  T+ +V+ +G+ +   F +SPR  T       Q+  
Sbjct: 279 ADPQYTFTTDVIVGFPGETDQDFEETLRIVEDVGFIKVHIFPFSPRERTKAYTFSSQLPV 338

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
           +V  ER   L    RE         +G  + VL+E+   ++G   G S +   V   +  
Sbjct: 339 SVINERKKHLAHVAREVAYREQRRRIGDTLSVLVERV--DEGIAYGHSSYFDMVGFPADP 396

Query: 445 H-NIGDIIKVRITDVKISTLYGELV 468
             ++  +I VRI  V+   L G+ V
Sbjct: 397 DVSVNTLIDVRIESVEEDILKGKRV 421


>gi|24213838|ref|NP_711319.1| 2-methylthioadenine synthetase [Leptospira interrogans serovar Lai
           str. 56601]
 gi|81589771|sp|Q8F710|RIMO_LEPIN RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|24194676|gb|AAN48337.1| 2-methylthioadenine synthetase [Leptospira interrogans serovar Lai
           str. 56601]
          Length = 437

 Score =  312 bits (800), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 108/451 (23%), Positives = 209/451 (46%), Gaps = 19/451 (4%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + ++F++ + GC  N+ DS+ M      +G+   +  +++D   +NTC   + A E+   
Sbjct: 1   MDKKFYITTLGCPKNIADSMSMHHSLLEEGFTLASLPEESDFHFINTCTFIQSATEETIQ 60

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +     +K           +VV GC A+   + I    P V++  G   Y +  ++L  
Sbjct: 61  TILSAAQVKKQ-----NHQKLVVVGCFAERYPDNIHSEIPEVDLFFGTGKYSQAGKILRE 115

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
                     +++ +   ER  +     N  +   A++ + +GC++ C+FC++P  RG  
Sbjct: 116 KFPELSPSQLEFN-DSLLERWKLSSKIENYSKPY-AYVKVSDGCNRGCSFCIIPSFRGKF 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +   L  ++ +  + I  G  EI L+ Q+   + G+  +       D++  ++EI  L  
Sbjct: 174 VESPLDDILRDTNRAIRAGAKEICLVSQDT-VYYGRDSE----ILLDMVRKVAEIDSLEI 228

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LR    +P   ++ LI+  G+   + PYL  P+Q  S +ILK MNR   +  ++ +    
Sbjct: 229 LRLLYLYPDKKTEKLIRLMGETSKIAPYLESPLQHVSSKILKVMNRTGESSYFKDLFSLA 288

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R V+P + I + FI+G+PGE  +D    +  ++     +   F YSP+ GT G+ + + V
Sbjct: 289 REVKPGLEIRTSFIIGYPGEEPEDVDQILRFIEDTRPEKVNLFSYSPQEGTKGAQLKQTV 348

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSV 438
            E  K++R+  ++    E     +++ +G+  + +++    E G++V R    +P +  V
Sbjct: 349 SEKEKSKRINLIRDSHLEILEEIHESRIGRTYDAIVDGI--EDGQVVVRRFQDAPEMDEV 406

Query: 439 VLNSKNHNI-GDIIKVRITDVKISTLYGELV 468
           V       I G I KVRI       + G  V
Sbjct: 407 VYVDDVSLIPGRIGKVRIDSFYEYDMNGTWV 437


>gi|255263244|ref|ZP_05342586.1| conserved hypothetical protein [Thalassiobium sp. R2A62]
 gi|255105579|gb|EET48253.1| conserved hypothetical protein [Thalassiobium sp. R2A62]
          Length = 417

 Score =  312 bits (800), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 127/444 (28%), Positives = 205/444 (46%), Gaps = 39/444 (8%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
             + GC++N Y++  M+D+    G E        + +V+NTC +  +A  K    + ++R
Sbjct: 6   FSTLGCRLNTYETHAMQDLAQRAGVE--------NAVVVNTCAVTAEAVRKAKQEIRKLR 57

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT-------YYRLPELLE 141
                  ++  +  ++V GC AQ E E     +  V+VV+G              P+L+ 
Sbjct: 58  -------RDHPEAKLIVTGCAAQTEPETFKNMA-EVDVVIGNTEKMQAETWQQMTPDLIG 109

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           +    +  VD   SV      L  +DG   R R   A++ +Q GCD  CTFC++PY RG 
Sbjct: 110 QTEPVQ--VDDIMSVTKTAGHL--IDGFGTRSR---AYVQVQNGCDHRCTFCIIPYGRGN 162

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
             S     VVD+ ++L D+G  E+ L G ++ +W G  L  +    + +L  L  +  L 
Sbjct: 163 SRSVPAGVVVDQIKRLRDSGYNEVVLTGVDLTSW-GADLPAQPKLGNLVLRILKLVPDLP 221

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           RLR ++    ++ D L++A      LMP+LHL +Q G D ILK M RRH   +  +  + 
Sbjct: 222 RLRISSIDSIEVDDALMQAIATEPRLMPHLHLSLQHGDDLILKRMKRRHLRDDAIRFSED 281

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
            R +RP++   +D I GFP ETD  F  ++ LV+         F YS R+GTP + M   
Sbjct: 282 ARKLRPEMTFGADIIAGFPTETDAHFENSLRLVEDCHLTWLHVFPYSARIGTPAAKMP-A 340

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           V+  V  ER   L++       +  +A + +   VL+E         +GR+     V  +
Sbjct: 341 VNGKVIKERAARLREAGAAAVQTHLNAQLDRTHHVLMENPN------MGRTEQFTPVQFS 394

Query: 442 SKNHNIGDIIKVRITDVKISTLYG 465
                 G I+   IT +    L  
Sbjct: 395 KPQVE-GSIVTTNITGLDGDQLTA 417


>gi|240851393|ref|YP_002972796.1| tRNA modification enzyme, MiaB family [Bartonella grahamii as4aup]
 gi|240268516|gb|ACS52104.1| tRNA modification enzyme, MiaB family [Bartonella grahamii as4aup]
          Length = 427

 Score =  312 bits (800), Expect = 8e-83,   Method: Composition-based stats.
 Identities = 115/440 (26%), Positives = 191/440 (43%), Gaps = 24/440 (5%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           + ++GC++N Y+S  +     S G +++        I+ NTC +  +A  +    + + R
Sbjct: 5   IVTFGCRLNSYESEIIRKESTSSGLDQLKDG----AIIFNTCAVTAEAVRQAKQAIRKAR 60

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
                  +E     ++V GC AQ E +        V++V+G +         +   FG  
Sbjct: 61  -------RENPHARIIVTGCAAQTEAQNFASMR-EVDLVLGNEDKLHAHSYRQLPDFGIN 112

Query: 149 VVDTDYSVEDKFERLSIVDGGYN-RKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
             +    + D  E   I     +  +    AF+ +Q GCD  CTFC++PY RG   S  +
Sbjct: 113 HSEKV-RINDIMEVQKIAPHMVSAMQERTRAFVQVQNGCDHRCTFCIIPYGRGPSRSVPM 171

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
             V+++ +KLI  G+ E+ L G ++ +  G  L G+          L  +  L RLR ++
Sbjct: 172 GAVIEQIKKLIGEGIQEVVLTGVDLTS-YGHDLPGKATLGKLTSAILHHVPNLARLRLSS 230

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
               +  + LI        +MP+LHL +Q+G + ILK M RRH      Q    +R+ RP
Sbjct: 231 IDSIEADEELINLLAYETRIMPHLHLSLQAGDNMILKRMKRRHLREHAIQFCQELRAKRP 290

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
            +   +D I GFP ET++ F+ ++ L+          F +SPR GTP + M  Q++  + 
Sbjct: 291 TMVYGADLIAGFPTETEEMFQNSLVLIKDCNLTHLHVFPFSPREGTPAARMP-QINRKIV 349

Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNI 447
             R   L+K   E            +  VLIEK        +GR+     V +       
Sbjct: 350 KIRAEKLRKAGEEAYQKHLSHLQNSLQTVLIEKDE------IGRTEDYTLVQVKG--AKA 401

Query: 448 GDIIKVRITDVKISTLYGEL 467
           G I++  I D     L   L
Sbjct: 402 GTIVQALIVDHDGDKLIAVL 421


>gi|183220785|ref|YP_001838781.1| putative MiaB-like tRNA modifying enzyme [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Paris)']
 gi|189910885|ref|YP_001962440.1| 2-methylthioadenine synthetase [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|238066359|sp|B0SGD8|RIMO_LEPBA RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|238066364|sp|B0SPT9|RIMO_LEPBP RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|167775561|gb|ABZ93862.1| 2-methylthioadenine synthetase [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167779207|gb|ABZ97505.1| Putative MiaB-like tRNA modifying enzyme [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Paris)']
          Length = 448

 Score =  312 bits (800), Expect = 8e-83,   Method: Composition-based stats.
 Identities = 121/460 (26%), Positives = 219/460 (47%), Gaps = 17/460 (3%)

Query: 13  MVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHI 72
           M   + +    P+ FF+ + GC  N  DS+ M      +G       + +D  ++NTC  
Sbjct: 1   MPKSLENTNETPKSFFITTLGCPKNTVDSMAMHQSLLKEGLLPAAGPEASDFHLVNTCTF 60

Query: 73  REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT 132
            + A ++    +    ++K    +      +VV GC A+  G+EI    P V++  G   
Sbjct: 61  IQDATKETIQTILDSIDIKKQNKQ-----KLVVVGCFAERAGKEISDDLPEVDLHFGTGK 115

Query: 133 YYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTF 192
           Y +  E+L R  F     D     ED  ERL+   G  N  +   +++ I +GC++ C F
Sbjct: 116 YDKAGEIL-RKNFPLEFKDLTEFNEDLLERLTTSKGIENYSKPY-SYVKISDGCNRGCHF 173

Query: 193 CVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLY 252
           C++P  RG       + V+++ +  +  G  EI L+ Q+   + GK  D       DL+ 
Sbjct: 174 CIIPNLRGKYRDTDSNDVLEQTKLAVKAGSKEICLVSQDT-VFYGKDTD----KLMDLVR 228

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
           S++ ++GL  LR    +P   ++ L+  + ++  + PYL  P+Q  S  +LKSMNR    
Sbjct: 229 SVAAVEGLEILRLLYLYPDKKTEKLLDLYREIPKIAPYLESPLQHVSKSVLKSMNRTGDY 288

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
             ++ +  + R +RPD+ I + FI+GFPGET +D    +  V+ +   +   F YSP+ G
Sbjct: 289 EFFKSLFQKARDIRPDLEIRTSFILGFPGETMEDVEEIIRFVEDVKPEKVNLFPYSPQEG 348

Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR- 431
           T G+ M  Q+ +   A R+  +++       + +   +G+I   ++++   + G +V R 
Sbjct: 349 TKGATMDGQLKDKEIARRVNLVREAYLGTLKTIHQNRIGKIYPCVVDEVL-DDGAIVRRL 407

Query: 432 --SPWLQSVV-LNSKNHNIGDIIKVRITDVKISTLYGELV 468
             +P +  VV + +K+  +G   KVR+       + G  V
Sbjct: 408 QDAPEIDEVVYVETKDLKLGQFGKVRVDSFYELDMSGTWV 447


>gi|157363921|ref|YP_001470688.1| MiaB-like tRNA modifying enzyme [Thermotoga lettingae TMO]
 gi|157314525|gb|ABV33624.1| MiaB-like tRNA modifying enzyme [Thermotoga lettingae TMO]
          Length = 433

 Score =  312 bits (800), Expect = 8e-83,   Method: Composition-based stats.
 Identities = 126/439 (28%), Positives = 217/439 (49%), Gaps = 23/439 (5%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +R +V   GC++N Y+S  M +     G+    +  +ADL VLNTC +  +AA K    +
Sbjct: 2   KRAYVTFLGCKVNQYESEYMIEQLEQHGFVMSPNFSEADLCVLNTCAVTSEAARKSRQLI 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA- 143
            ++R       +   D ++V  GC A  + + ++      N+++G      L   + R  
Sbjct: 62  RKLR-------RSNPDAVIVATGCYAHIDAQSLIDI--GANIIIGNNEKRNLVNYIARYF 112

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE- 202
                 VD     ++  E++        R     A++ +++GC++FC++C+VP TRG + 
Sbjct: 113 ENSSNFVDVSEPDQEVLEKVKSFLSDRTR-----AYIKLEDGCNEFCSYCIVPKTRGKQI 167

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            S+ +  V+ E   L++NG  EI L G N+  +   G D        L   L++I    R
Sbjct: 168 RSKPVEVVIKEMNDLLNNGYKEIVLTGVNLGKY---GRDIGTSLSMLLRTLLNQIHDDSR 224

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R ++ + +D+SD LI      + L P+LH+P+QSGS+RIL+ MNR++T  E   I +++
Sbjct: 225 IRLSSINVQDLSDELISLFALSNKLCPHLHIPLQSGSNRILQKMNRKYTVEEALDIFEKL 284

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           +S+    + ++D IVGFPGET  DF  T +L+ +IG+ +   FKYS R GT  S +   +
Sbjct: 285 KSINQYFSFTTDVIVGFPGETIGDFLQTQELIKEIGFVKVHIFKYSSRPGTVASKLGYHI 344

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
             + K  R   L    +E    +    +G+I  VL+E +    G   G   +        
Sbjct: 345 SNDEKERRAKELAALCKEISEKYRKKSIGKIRHVLVEHN--RSGICSGYDEYYVRHEFAD 402

Query: 443 KNHNIGDIIKVRITDVKIS 461
            +  IG+I +V +  V  +
Sbjct: 403 GD--IGNIERVIVKCVSTN 419


>gi|187251699|ref|YP_001876181.1| MiaB family RNA modification enzyme [Elusimicrobium minutum Pei191]
 gi|186971859|gb|ACC98844.1| RNA modification enzyme, MiaB family [Elusimicrobium minutum
           Pei191]
          Length = 409

 Score =  312 bits (800), Expect = 8e-83,   Method: Composition-based stats.
 Identities = 122/445 (27%), Positives = 212/445 (47%), Gaps = 38/445 (8%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F+K++GC++N  +S  + + F  QG    ++ + AD+ +LNTC +  KA   V    
Sbjct: 2   KKVFIKTFGCRVNQVESQALREEFLKQGCSFTDAFETADICLLNTCTVTAKADSDVEKLA 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            RI N             +++ GC A A   +I +  P               E++ +  
Sbjct: 62  RRITN-------RNPMARLILTGCYAAAHEGKIKQNLPSA-------------EIINKHN 101

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
             K + DTD       +    V G   R R   AF+ IQ+GCD FC++C++P+ R  ++S
Sbjct: 102 IAKTLFDTD-------DDFWAVSGNEGRSR---AFIKIQDGCDNFCSYCIIPFARNKKLS 151

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           + +   V+E ++LI  G  EI L G N+  +            + LL  + +I+G  R+R
Sbjct: 152 KPIPSTVNEIKELISKGFKEIVLTGINIGNYLCPQT---GADLAVLLKEIFKIEGEYRIR 208

Query: 265 YTTSHPRDMSDCLIKAHGDL-DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           +++     ++D L+ A  +       Y H+P+QSGSD +LK MNRR+   +Y + I  I+
Sbjct: 209 FSSIELNTVTDSLLAAAKEGGSKFCNYFHIPLQSGSDLVLKDMNRRYLTKDYAKRIGEIK 268

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           ++ P I I +D I G+P ET+++F  + + + ++       F YS R GT  +N+ +   
Sbjct: 269 AMFPGIGIYADIIAGYPVETEEEFEKSYNFIKEVALNGLHVFSYSVRPGTKAANLPQLNP 328

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
             +K  R   L++     +  F     GQ +E L+E+  K+     G +     V    K
Sbjct: 329 VEIKK-RSDKLRELDFTLRCEFAALQKGQTLETLVER--KKGEFNTGVAGNFVRVDFKGK 385

Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468
               G ++KV+I   K     GE++
Sbjct: 386 -AKAGSLVKVKIISFKDGVCIGEML 409


>gi|218886794|ref|YP_002436115.1| MiaB-like tRNA modifying enzyme YliG [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218757748|gb|ACL08647.1| MiaB-like tRNA modifying enzyme YliG [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 461

 Score =  312 bits (799), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 127/457 (27%), Positives = 204/457 (44%), Gaps = 23/457 (5%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
            +  S GC  N  D+ R+     +     V  M +AD++++NTC     A E+    +  
Sbjct: 4   VYSVSLGCPKNRVDTERLLGALGAP-VRPVARMAEADVVLVNTCGFILPAVEESVRTVVE 62

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGE-EILRRSPIVNVVVGPQTYYRLPELLERARF 145
             +  +   +     L+ VAGC+    GE ++    P V++ +  Q+    P+LL RA  
Sbjct: 63  AVDEISGLAR---RPLLAVAGCLVGRYGERDLAAELPEVDLWLPNQSIETWPDLLARAVG 119

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKR-----GVTAFLTIQEGCDKFCTFCVVPYTRG 200
            +  +    +        ++  G     R        A+L I +GC   C+FC +P  RG
Sbjct: 120 ARVAMGGGLAGSGTLAPGAVAPGYAGGTRLLSTGPSYAWLKISDGCRHNCSFCTIPSIRG 179

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG-----EKCTFSDLLYSLS 255
              S   +++  EAR+L+D GV E+ L+ Q+V AW G   +G      K     LL  L 
Sbjct: 180 AHRSTPAAELEREARQLLDMGVRELILVAQDVTAWGGDLENGPGGSAGKGDLRPLLDRLL 239

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV-LMPYLHLPVQSGSDRILKSMNRRHTAYE 314
            + GL RLR    +P  ++D L+          +PY  +P+Q     +L  M R   A  
Sbjct: 240 PLPGLDRLRLMYLYPAGLNDDLLAYLAAAGAPFVPYFDVPLQHAHPDVLGRMGRPF-ARN 298

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
            R ++DRIR   PD A+ +  IVGFPGET++ + A  D V +  +     F Y    GTP
Sbjct: 299 PRVVVDRIRKHFPDAALRTSIIVGFPGETEEHYAALTDFVAETRFHHLGVFAYRAEEGTP 358

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRS- 432
            + M  QVD+ VK  R   L +   E      ++CVGQ + VL++  H +  G   GR+ 
Sbjct: 359 AAAMPGQVDDKVKEWRRDALMEVQAEISEEIMESCVGQRLPVLVDAPHDEWPGLHTGRTW 418

Query: 433 ---PWLQSV-VLNSKNHNIGDIIKVRITDVKISTLYG 465
              P +  V  ++      G +++  I + +   L  
Sbjct: 419 FQAPEIDGVTYVSGAGVIPGALVEADIVEARTYDLVA 455


>gi|304314978|ref|YP_003850125.1| 2-methylthioadenine synthetase [Methanothermobacter marburgensis
           str. Marburg]
 gi|302588437|gb|ADL58812.1| predicted 2-methylthioadenine synthetase [Methanothermobacter
           marburgensis str. Marburg]
          Length = 427

 Score =  312 bits (799), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 130/444 (29%), Positives = 209/444 (47%), Gaps = 27/444 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R +++++GC  N  DS  M  +    G      +D+AD+I+LNTC+++     KV + + 
Sbjct: 5   RVYIETFGCTFNQADSEIMAGVLSEAGASLTG-IDEADVIILNTCYVKHPTEHKVINRIK 63

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           RIR +         D  +VVAGC+ + + +++   S   +  +GP    R  E++  A  
Sbjct: 64  RIREM-------YPDKGLVVAGCMVEIDPQKLESISGDAS-WLGPHQLMRTAEVVGAAYR 115

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G      D      F     V     R   +   + I EGC   C++C   + RG   S 
Sbjct: 116 G------DVKRITGFTSDVKVGVPRVRSNPLIHIIQICEGCSGSCSYCCTRFARGSIQSY 169

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
               +V EAR+ I+ G  EI L  Q+  A  G          SDL+  ++EI G  R+R 
Sbjct: 170 PSDIIVQEAREAIEAGCREIQLTAQDTAA-YGSDT---GERLSDLIREITEIPGDFRVRV 225

Query: 266 TTSHPRDMSDCL---IKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
              HP  +   L   ++A    + +  +LHLPVQSGSDR+L+ M R HT  ++R I+DR 
Sbjct: 226 GMMHPASVLRDLDGLVEAFR-SEKVYSFLHLPVQSGSDRVLRDMGRGHTVDDFRMIVDRF 284

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           RS  P+I+I++D IVG+P E +DDF  T  L++++        KY  R     S++ +++
Sbjct: 285 RSRIPEISIATDIIVGYPTEGEDDFLDTCRLLEEVRPGFIHLSKYRHRPRAFSSSL-DEI 343

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
           D      R   +++         N   VG    +LI + G++ G  +GR+     VV  +
Sbjct: 344 DFRELRRRSKAVEELKGRITEEENRRLVGTTQNILIVERGRKGG-FIGRTDSYIPVV--T 400

Query: 443 KNHNIGDIIKVRITDVKISTLYGE 466
            +  +G    VRI     + L  E
Sbjct: 401 HDGEVGSFRSVRIKRATGTYLIAE 424


>gi|221640408|ref|YP_002526670.1| MiaB-like tRNA modifying enzyme [Rhodobacter sphaeroides KD131]
 gi|221161189|gb|ACM02169.1| MiaB-like tRNA modifying enzyme [Rhodobacter sphaeroides KD131]
          Length = 425

 Score =  312 bits (799), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 124/444 (27%), Positives = 199/444 (44%), Gaps = 36/444 (8%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
             + GC++N Y++  M+++  + G   V++      +V+NTC +  +A  K    + R+R
Sbjct: 6   FSTLGCRLNAYETEAMKELATAAG---VDNA-----VVVNTCAVTAEAVRKAKQEIRRLR 57

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA----- 143
                  +E     ++V GC AQ E        P V+ V+G     +       A     
Sbjct: 58  -------RENPQATIIVTGCAAQTEPAT-FSAMPEVDRVIGNTEKMQPATWAAMAPDLIG 109

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
              +  VD   SV +    L     G+ R R   A++ +Q GCD  CTFC++PY RG   
Sbjct: 110 ETERVQVDDILSVRETAGHLI---DGFGRHR---AYVQVQNGCDHRCTFCIIPYGRGNSR 163

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           S     VV++ R+L+D G  E+ L G ++ +W G  L         ++  L  +  L RL
Sbjct: 164 SVPAGVVVEQIRRLVDRGFAEVVLTGVDLTSW-GADLPAAPRLGDLVMRILRLVPDLARL 222

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R ++    +  + L+ A      LMP+LHL +Q G D ILK M RRH   +  +  +  R
Sbjct: 223 RISSIDSIEADEALMGALATEPRLMPHLHLSLQHGDDLILKRMKRRHLRDDAIRFCEEAR 282

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
            +RPDI   +D I GFP ET+  F  ++ LV++ G      F +SPR GTP + M  Q+ 
Sbjct: 283 RLRPDIVFGADIIAGFPTETEAAFANSLKLVEECGLTFLHVFPFSPRQGTPAARMP-QLA 341

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
             V  ER   L+     + ++  +   G+   VL+E         +GR+     V   + 
Sbjct: 342 GPVIRERAAQLRTLGEARLLAHLEGERGRTHRVLMEGP------RLGRTEQFTEVAFAAD 395

Query: 444 NHNIGDIIKVRITDVKISTLYGEL 467
               G I+   +T      L   +
Sbjct: 396 QAE-GRILSATVTGHAEGRLTATV 418


>gi|315497313|ref|YP_004086117.1| miab-like tRNA modifying enzyme [Asticcacaulis excentricus CB 48]
 gi|315415325|gb|ADU11966.1| MiaB-like tRNA modifying enzyme [Asticcacaulis excentricus CB 48]
          Length = 443

 Score =  312 bits (799), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 127/461 (27%), Positives = 213/461 (46%), Gaps = 38/461 (8%)

Query: 9   GVAHMVSQIVDQCIVPQR-----FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDAD 63
           G AH   ++  +             V ++GC++N Y+S ++  +    G      +D A 
Sbjct: 4   GHAHPHEEVPAEPPATPTGVTSGVEVVTFGCRLNSYESEQIRKVAAEDG------LDGA- 56

Query: 64  LIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPI 123
            I+ NTC +  +A  +    + R R       KE  D  ++V GC AQ + +        
Sbjct: 57  -IIFNTCAVTGEAVRQARQAIRRAR-------KENPDARLIVTGCAAQTDPDTFAT-MGE 107

Query: 124 VNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQ 183
           V+ ++G     +           +  V+  +SV +    L  +DG  +R R   A++ +Q
Sbjct: 108 VDFIIGNGDKAKAGAYALTPDSARIAVNDIFSVRETAGHL--IDGLKDRAR---AYVEVQ 162

Query: 184 EGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
            GCD  CTFC++PY RG   S +   VV +  +L+  G  E+ L G ++ +W G  L G+
Sbjct: 163 NGCDHRCTFCIIPYGRGNSRSAAAGDVVGQISRLVAEGYNEVVLTGVDLTSW-GNDLPGQ 221

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
                 +   L  +  L RLR ++    ++ D L++   + + L PYLHL +Q G D IL
Sbjct: 222 PQLGHLVARILKHVPNLKRLRLSSIDAAEIDDTLLRLFAEEERLAPYLHLSLQHGDDLIL 281

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           K M RRH   +  +++ ++R +RPD+A  +D I GFP ET++ F  ++ LVD+   A   
Sbjct: 282 KRMKRRHLRADAIRLVQKVRVLRPDVAFGADMIAGFPTETEEHFANSLALVDECDLAFLH 341

Query: 364 SFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK 423
            F YSPR  TP + +  Q+   +  +R   L+ K  E      D  VG+ +  ++EK G 
Sbjct: 342 VFPYSPRPQTPAAKIP-QLPRALIKDRAARLRGKAVEALTRHLDKQVGRDVSAVVEKPG- 399

Query: 424 EKGKLVGRSPWLQSVVLNS----KNHNIGDIIKVRITDVKI 460
                  R+     V+       +  N+G I  ++IT    
Sbjct: 400 -----FARAADFTEVLFEGGAAPEKVNVGGIASLQITGHDG 435


>gi|288817533|ref|YP_003431880.1| 2-methylthioadenine synthetase [Hydrogenobacter thermophilus TK-6]
 gi|288786932|dbj|BAI68679.1| 2-methylthioadenine synthetase [Hydrogenobacter thermophilus TK-6]
 gi|308751136|gb|ADO44619.1| MiaB-like tRNA modifying enzyme [Hydrogenobacter thermophilus TK-6]
          Length = 410

 Score =  312 bits (799), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 122/432 (28%), Positives = 208/432 (48%), Gaps = 28/432 (6%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
               + GC+ N +D+  +   F  +GY+ V+  D AD+ V+NTC +   A       + R
Sbjct: 4   VAFFTLGCRSNEFDTHFIAHQFQLKGYQVVDF-DKADIYVINTCSVTAGAERSSRQAIYR 62

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER---A 143
            + L         + LVVV GC AQ   + +      V++VVG      +  ++E     
Sbjct: 63  AKRL-------NPNSLVVVTGCYAQINPQAL-SELKEVDLVVGNTHKRDILRIVEEYLSE 114

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           R GK  VD  +          I      R      F+ +QEGC++FC+FCV+P+ RG   
Sbjct: 115 RKGKVYVDNVFRQNSVESFELITYFEKVRP-----FVKVQEGCNRFCSFCVIPFARGKSR 169

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           S    +V+ EA  L + G  EI L G  +    G  +        DLL  L +I+G+  +
Sbjct: 170 SVLKEKVLKEAELLAERGFKEIVLTGTQLT-QYGWDIA---TDLCDLLKDLVKIRGIELI 225

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R ++ +P ++S  L+      + + P+ HLP+QSGSDRIL+ M R ++  +Y  +++++ 
Sbjct: 226 RLSSLYPSEISQKLLDFVLLEEKIAPHFHLPLQSGSDRILQLMRRDYSVKDYVHLVEKVI 285

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
             RP  ++ +D IVGFP E+D DF  T  L+ ++       F YS R GT    M  +V 
Sbjct: 286 EKRPLSSVGTDVIVGFPSESDKDFEETYKLLSQLPIHYMHVFPYSDREGTKACKMSRKVS 345

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
           + VK ER+  L+   ++++  F     G+ +  L+     E+  L+  +    ++     
Sbjct: 346 QKVKKERVKTLKSLDQQKRAEFLKKNEGKELRALV----IEENMLL--TENYLNLEREGY 399

Query: 444 NHNIGDIIKVRI 455
              IG++++V++
Sbjct: 400 TS-IGELVRVKV 410


>gi|288925016|ref|ZP_06418952.1| 2-methylthioadenine synthetase [Prevotella buccae D17]
 gi|288338206|gb|EFC76556.1| 2-methylthioadenine synthetase [Prevotella buccae D17]
          Length = 450

 Score =  312 bits (799), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 118/420 (28%), Positives = 193/420 (45%), Gaps = 14/420 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++    + GC++N  ++     +    G       + AD+ ++NTC + E A  K    +
Sbjct: 10  KKAAYYTLGCKLNFSETSTFGKLLSDIGVVAAQKGERADICLINTCSVTEVADHKCRQVI 69

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R+       ++E     VVV GC AQ E E++  R   V++V+G      L + L  A 
Sbjct: 70  HRM-------VRENPGAFVVVTGCYAQLESEKV-SRIDGVDLVLGSNEKADLIQYLNDAF 121

Query: 145 FGKRVVDTDYSVED-KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            G    +  +     K + +       +R      FL +Q+GC  FCT+C +PY RG   
Sbjct: 122 VGGVRQEALHRHHSVKTKDIKSFQPSCSRGNRTRYFLKVQDGCSYFCTYCTIPYARGFSR 181

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           + S++ +V++AR+    G  EI L G N+    G        +F DL+ +L E++G+ R 
Sbjct: 182 NPSIASLVEQAREAALEGGREIVLTGVNI----GDFGATTHESFLDLVKALDEVEGIERF 237

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R ++  P   SD L++        MP+ H+P+QSGSD +LK M+RR+    +   I+ I+
Sbjct: 238 RISSLEPDLCSDELVEYCSISRAFMPHFHIPLQSGSDEVLKLMHRRYDRALFAHKINLIK 297

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              PD  I  D +VG  GE  + F    D ++ +   Q   F YS R GT   ++   VD
Sbjct: 298 EKMPDAFIGVDVMVGCRGEKPEYFEDCYDFLESLPVTQLHVFPYSERPGTSALSIPYVVD 357

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
           +  K +R+  L      +   F    +G    VL EK  K K  + G +     V L ++
Sbjct: 358 DKEKRQRVKRLLDMSDRKTEEFYAKYIGTESVVLFEKAAKGKA-MHGFTDNYIRVELPAR 416


>gi|78187582|ref|YP_375625.1| MiaB-like tRNA modifying enzyme [Chlorobium luteolum DSM 273]
 gi|78167484|gb|ABB24582.1| MiaB-like tRNA modifying enzyme [Chlorobium luteolum DSM 273]
          Length = 438

 Score =  312 bits (799), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 115/442 (26%), Positives = 198/442 (44%), Gaps = 29/442 (6%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++    + GC++N  +S  +       G+      + ADL++++TC +  +A +K    +
Sbjct: 4   KKVAAVTLGCKLNYAESSSILQGLVEGGWVACGPEEGADLLIVHTCAVTGQAEQKCRQKI 63

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            ++       I+   +  V V GC AQ    E+L     V+ V G +  + L   L  A+
Sbjct: 64  RQL-------IRRNPECRVAVIGCYAQLSP-EVLGGIEGVDAVFGNKEKFDLDRYLAVAK 115

Query: 145 FGKRVVDTDYS-VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            G+  +    +    + +  S             AFL IQ+GCD  C +C +P  RG   
Sbjct: 116 GGRSALPAVAAGSVSRLQTASPGCSPPAGSGRTRAFLKIQDGCDYLCAYCTIPLARGRSR 175

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           S     V+ +A +L  +G  EI L G N   +R  G+D     F  LL  L E+  + R+
Sbjct: 176 SIEPEDVLRQAHRLAGSGYREIVLSGVNTGDYRSGGVD-----FPALLRMLEEVP-VSRI 229

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R ++  P  +S   ++  G    ++P+ HLP+QSGSD +L++M RR+TA  YR+ +  +R
Sbjct: 230 RISSLEPDMLSPAFLQVVGSSARIVPHFHLPLQSGSDPVLRAMRRRYTAEGYRRAVHALR 289

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT-----PGSNM 378
            V P  A+ +D +VG+PGE ++DF+A    ++++  +    F  S R GT          
Sbjct: 290 EVLPGCAVGADVMVGYPGEEEEDFQAMYGFIEQLPLSYLHVFSCSVRPGTLLGRQVAGGE 349

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSV 438
             +V+    A R   L +    +   F  + +G    VL E+         G +P    V
Sbjct: 350 RLRVNPKETARRSALLVELGERKAREFALSRIGSRQMVLFEE------GYGGYTPEYLRV 403

Query: 439 VL---NSKNHNIGDIIKVRITD 457
           V+   +      G  + V +  
Sbjct: 404 VVEPPDGGEPLAGKELPVHVEG 425


>gi|119356260|ref|YP_910904.1| RNA modification protein [Chlorobium phaeobacteroides DSM 266]
 gi|119353609|gb|ABL64480.1| RNA modification enzyme, MiaB family [Chlorobium phaeobacteroides
           DSM 266]
          Length = 446

 Score =  312 bits (799), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 128/460 (27%), Positives = 214/460 (46%), Gaps = 29/460 (6%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           +P+   + + GC++N  +S  + D+   +G+E  +   + DLI++NTC + ++A +K   
Sbjct: 1   MPKITAI-TLGCKLNYAESSAILDLLSKKGWEISSYEKNEDLIIINTCAVTKQAEQKCRQ 59

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLP--ELL 140
            + +I       I++     +VV GC AQ    E+L +   VN ++G    Y LP  E++
Sbjct: 60  KIRKI-------IRDNPGSRIVVTGCYAQLSP-EVLCKIDGVNAILGSSDKYALPLYEVI 111

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
                   ++      ++K                  AFL IQ+GCD  C +C +P+ RG
Sbjct: 112 GNIESSLPLISVSEIKKEKTIFPGYSLPATFASERTRAFLKIQDGCDYGCAYCTIPFARG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
              S S   ++ +A  L+ +G  EI L G N+  +R +G+       + LL  L ++  +
Sbjct: 172 RSRSFSPDDIIAQASALVASGYREIVLTGVNIGDYRYRGV-----RLAALLRMLEKVP-V 225

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R ++  P  + D LI      +++ P+ HLP+QSGSD +L++M RR+    YRQ I 
Sbjct: 226 ARIRISSIEPDILDDALIAVVAASEIIAPHFHLPLQSGSDAVLRAMCRRYDTAGYRQRIL 285

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT-----PG 375
           R      D ++SSD +VG+PGE+ DD+R     ++ +  +    F  S R GT       
Sbjct: 286 RAVEAIADCSVSSDVMVGYPGESADDYRNMYRFLEGLPISSLHVFSCSVRPGTQLAEQVA 345

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG---KLVGRS 432
           +   E VD +   +R   L K    ++  F +  VG    VL E+  K      K  G +
Sbjct: 346 TKKREVVDPDECRQRSSELIKLGNLKKSRFMEGYVGMECMVLFEESQKGANGTRKYSGYT 405

Query: 433 PWLQSVVL---NSKNHNIGDIIKVRITDVKIS-TLYGELV 468
                V +    S  H  G I+ V I  +     L G L+
Sbjct: 406 RNYLRVTVTVSESSVHLAGSILPVFIEGIDDDLNLMGRLL 445


>gi|282854046|ref|ZP_06263383.1| MiaB-like protein [Propionibacterium acnes J139]
 gi|282583499|gb|EFB88879.1| MiaB-like protein [Propionibacterium acnes J139]
          Length = 481

 Score =  311 bits (798), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 127/477 (26%), Positives = 202/477 (42%), Gaps = 46/477 (9%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
              + S GC  N  DS  +     + G+  V+   +A+ +V+NTC   E+A +     L 
Sbjct: 9   TVHLVSMGCARNDVDSEELAARMEAGGFRLVDDPAEAETVVVNTCGFIEQAKKDSVDTLL 68

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
              +L+ +    G    VV  GC+A+  G E+    P  + V+G   Y  +   L     
Sbjct: 69  AAADLRGN----GTTTSVVAVGCMAERYGRELAESLPEADAVLGFDDYGDIAGRLRTILD 124

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKR------------------------------- 174
           G  +             +S VD    R                                 
Sbjct: 125 GGSLETHVPRDRRTLLPISPVDRPIARAEVSVPGHGTAPDLPASVAPESGPRPTRRRLGT 184

Query: 175 GVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA 234
           G +A L +  GCD+ C FC +P  RG  +SR ++++V+EAR L+D+GV E+ L+ +N ++
Sbjct: 185 GPSAPLKMASGCDRRCAFCAIPRFRGSYLSRPIAEIVEEARWLVDHGVKEVFLVSEN-SS 243

Query: 235 WRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP 294
             GK L  +      LL +L ++ GL  +R +   P ++   LI      D ++PY  L 
Sbjct: 244 SYGKDL-RDLRLLEKLLVTLDQVDGLEWIRVSYLQPAELRPGLIDTILAADKVVPYFDLS 302

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
            Q  S  +L+SM R   A  +  IID IRS  P+    S+FI GFPGETD D     D +
Sbjct: 303 FQHASGPVLRSMRRFGDAESFLNIIDSIRSRCPEAGFRSNFITGFPGETDADVAVLADFL 362

Query: 355 DKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQII 414
            +     A  F YS   GT  + +   VDE+V   R   L     E      +  +G   
Sbjct: 363 QRARLDVAGIFAYSDEEGTEAAGLDGHVDEDVITARREDLADLTDELVSQRAEDRIGTRG 422

Query: 415 EVLIEKHGKEKGKLVGRS----PWLQSVV--LNSKNHNIGDIIKVRITDVKISTLYG 465
            V++E+  +    ++GR+    P +   V  +++   ++GDI+ V         L  
Sbjct: 423 RVMVEEIDEA---VIGRAEHQGPEVDGCVTLVDAAAVSVGDIVDVEFVGSDGVDLVA 476


>gi|254453567|ref|ZP_05067004.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Octadecabacter
           antarcticus 238]
 gi|198267973|gb|EDY92243.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Octadecabacter
           antarcticus 238]
          Length = 431

 Score =  311 bits (798), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 121/456 (26%), Positives = 200/456 (43%), Gaps = 41/456 (8%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           + S GC   + DS R+     ++GY        AD +++NTC   + A  +    +G   
Sbjct: 1   MVSLGCPKALVDSERILTRLRAEGYAISPDYAGADAVIVNTCGFLDSAKAESLDAIGEA- 59

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
                      +  V+V GC+  AE + I    P +  V GP  Y ++ + +  A     
Sbjct: 60  --------LNENGKVIVTGCLG-AEPDYIREHHPRILAVTGPHQYEQVLDAVHAA----- 105

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
                    D F  L    G     R   ++L I EGC+  C FC++P  RG   SR   
Sbjct: 106 ----VPPSPDPFIDLLPASGVSLTPRHY-SYLKISEGCNHKCKFCIIPDMRGKLQSRPAH 160

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-----GEKCTFSDLLYSLSEIKG---- 259
            V+ EA KL++NGV E+ ++ Q+ +A  G  +      G +   +DL   L  + G    
Sbjct: 161 AVLREAEKLVENGVRELLVISQDTSA-YGVDIKHAEDRGHRAHITDLARDLGSLGGDTKP 219

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
            VRL Y   +P      LI    D  +++PYL +P Q  S  +L+ M R   A +    I
Sbjct: 220 WVRLHYVYPYPHV--RQLIPLMAD-GLILPYLDIPFQHASTDVLRRMARPAAAAKTLDEI 276

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
              R++ PDI + S FIVG+PGET+ +F+  +D +D+    +   F+Y    G   + + 
Sbjct: 277 TAWRAICPDITLRSTFIVGYPGETEAEFQVLLDWMDEAQLDRVGCFQYENVAGARSNALP 336

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWL 435
           + V   VK ER     +K +    +   A VG +++V I     E G    R+    P +
Sbjct: 337 DHVPAEVKQERWDRFMEKAQVISEAKLAAKVGSVMDV-IIDDIDEDGIATCRTKSDAPEI 395

Query: 436 QSVVLNS---KNHNIGDIIKVRITDVKISTLYGELV 468
              +      +   +G+I+ V + +     L+G+++
Sbjct: 396 DGNLFIDEGTEGLKVGEIVSVEVDEAGEYDLWGKVI 431


>gi|153008261|ref|YP_001369476.1| MiaB-like tRNA modifying enzyme [Ochrobactrum anthropi ATCC 49188]
 gi|151560149|gb|ABS13647.1| MiaB-like tRNA modifying enzyme [Ochrobactrum anthropi ATCC 49188]
          Length = 427

 Score =  311 bits (798), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 126/441 (28%), Positives = 204/441 (46%), Gaps = 29/441 (6%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
             V ++GC++N Y+S  M+    + G   +        I+ NTC +  +A  +    + +
Sbjct: 3   VEVVTFGCRLNTYESEVMKREADAAGLGELKDG----AIIFNTCAVTAEAVRQARQAIRK 58

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
            R       +E  +  ++V GC AQ E +        V++++G +   +         FG
Sbjct: 59  AR-------RENPEARIIVTGCAAQTEADNFAA-MDEVDLILGNEEKLKSNSYRMLPDFG 110

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRG-VTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
               +    V D  E         +   G   AF+ +Q GCD  CTFC++PY RG   S 
Sbjct: 111 VNQFEKVR-VNDIMEVRETASHMVDAIEGRARAFVQVQNGCDHRCTFCIIPYGRGNSRSV 169

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            +  VVD+ ++L+ NG  E+ L G ++ +  G  L G       +   L+++  L RLR 
Sbjct: 170 PMGAVVDQVKRLVGNGYAEVVLTGVDMTS-YGPDLPGSLRLGKLVKTVLNQVPDLQRLRL 228

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
           ++    +  D L+ A  +   LMP+LHL +Q+G D ILK M RRH   +  +  + +RS+
Sbjct: 229 SSIDSIEADDDLMDAIANEKRLMPHLHLSLQAGDDMILKRMKRRHLRDDSIRFCETVRSL 288

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
           RPDI   +D I GFP ET+D FR ++ +V++ G +    F YS R GTP + M  QV   
Sbjct: 289 RPDIVFGADIIAGFPTETEDMFRNSLKIVEECGLSHLHVFPYSAREGTPAARMP-QVRRE 347

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445
           +  ER   L+ +          A  G +  +L+EK G      + R+       ++    
Sbjct: 348 IVKERAARLRAEGDRAYEKHLGALNGTLQRLLVEKEG------IARTEGFTLASVDGGA- 400

Query: 446 NIGDIIKVRITDVKISTLYGE 466
             G+II+ RI  V      GE
Sbjct: 401 -PGEIIE-RI--VTGHD--GE 415


>gi|49476310|ref|YP_034351.1| hypothetical protein BH16610 [Bartonella henselae str. Houston-1]
 gi|49239118|emb|CAF28422.1| hypothetical protein BH16610 [Bartonella henselae str. Houston-1]
          Length = 427

 Score =  311 bits (798), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 115/444 (25%), Positives = 192/444 (43%), Gaps = 32/444 (7%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           + ++GC++N Y+S  +     S G +++        I+ NTC +  +A  +    + + R
Sbjct: 5   IVTFGCRLNSYESEIIRKESTSSGLDQLKDG----AIIFNTCAVTAEAVRQAKQAIRKAR 60

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG-- 146
                  +E     ++V GC AQ E +     +  V++V+G +         +   FG  
Sbjct: 61  -------RENPHARIIVTGCAAQTEAQNFASMT-EVDLVLGNEDKLHAHSYRQLPDFGIN 112

Query: 147 ---KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
              K  ++    VE     +        R     AF+ +Q GCD  CTFC++PY RG   
Sbjct: 113 HSEKLRINNIMEVEKIASHMVSAMEERTR-----AFVQVQNGCDHRCTFCIIPYGRGPSR 167

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           S  +  V+++ +KL  NG+ E+ L G ++ +  G  L G+          L  I  L RL
Sbjct: 168 SVPMGSVIEQIKKLTGNGIQEVVLTGVDLTS-YGHDLPGKATLGKLTSAILHHIPDLPRL 226

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R ++    +  + LI        +MP+LHL +Q+G + ILK M RRH      Q    +R
Sbjct: 227 RLSSIDSIEADEELINLLAYEKRIMPHLHLSLQAGDNMILKRMKRRHLREHAIQFCQDLR 286

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           + RP +   +D I GFP ET++ F+ ++ LV+         F +SPR GTP + M  Q++
Sbjct: 287 AKRPTMVYGADLIAGFPTETEEMFQNSLSLVNDCHLTHLHVFPFSPREGTPAARMP-QIN 345

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
             +   R   L+K   +              ++L+EK G      +GR+       +   
Sbjct: 346 RKIIKMRAERLRKAGDKAYQKHLFHLQNSQQKILVEKDG------IGRTEDYTLAKIEG- 398

Query: 444 NHNIGDIIKVRITDVKISTLYGEL 467
               G I+K  I       L   L
Sbjct: 399 -AKAGTIVKALIVGHDKDKLIAVL 421


>gi|314966789|gb|EFT10888.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes
           HL082PA2]
 gi|314981126|gb|EFT25220.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes
           HL110PA3]
 gi|315091951|gb|EFT63927.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes
           HL110PA4]
 gi|315093292|gb|EFT65268.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes
           HL060PA1]
 gi|315103451|gb|EFT75427.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes
           HL050PA2]
 gi|327327616|gb|EGE69392.1| Fe-S oxidoreductase [Propionibacterium acnes HL103PA1]
          Length = 474

 Score =  311 bits (797), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 127/477 (26%), Positives = 202/477 (42%), Gaps = 46/477 (9%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
              + S GC  N  DS  +     + G+  V+   +A+ +V+NTC   E+A +     L 
Sbjct: 2   TVHLVSMGCARNDVDSEELAARMEAGGFRLVDDPAEAETVVVNTCGFIEQAKKDSVDTLL 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
              +L+ +    G    VV  GC+A+  G E+    P  + V+G   Y  +   L     
Sbjct: 62  AAADLRGN----GTTTSVVAVGCMAERYGRELAESLPEADAVLGFDDYGDIAGRLRTILD 117

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKR------------------------------- 174
           G  +             +S VD    R                                 
Sbjct: 118 GGSLETHVPRDRRTLLPISPVDRPIARAEVSVPGHGTAPDLPASVAPESGPRPTRRRLGT 177

Query: 175 GVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA 234
           G +A L +  GCD+ C FC +P  RG  +SR ++++V+EAR L+D+GV E+ L+ +N ++
Sbjct: 178 GPSAPLKMASGCDRRCAFCAIPRFRGSYLSRPIAEIVEEARWLVDHGVKEVFLVSEN-SS 236

Query: 235 WRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP 294
             GK L  +      LL +L ++ GL  +R +   P ++   LI      D ++PY  L 
Sbjct: 237 SYGKDL-RDLRLLEKLLVTLDQVDGLEWIRVSYLQPAELRPGLIDTILAADKVVPYFDLS 295

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
            Q  S  +L+SM R   A  +  IID IRS  P+    S+FI GFPGETD D     D +
Sbjct: 296 FQHASGPVLRSMRRFGDAESFLNIIDSIRSRCPEAGFRSNFITGFPGETDADVAVLADFL 355

Query: 355 DKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQII 414
            +     A  F YS   GT  + +   VDE+V   R   L     E      +  +G   
Sbjct: 356 QRARLDVAGIFAYSDEEGTEAAGLDGHVDEDVITARREDLADLTDELVSQRAEDRIGTRG 415

Query: 415 EVLIEKHGKEKGKLVGRS----PWLQSVV--LNSKNHNIGDIIKVRITDVKISTLYG 465
            V++E+  +    ++GR+    P +   V  +++   ++GDI+ V         L  
Sbjct: 416 RVMVEEIDEA---VIGRAEHQGPEVDGCVTLVDAAAVSVGDIVDVEFVGSDGVDLVA 469


>gi|183221932|ref|YP_001839928.1| hypothetical protein LEPBI_I2571 [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
 gi|189912001|ref|YP_001963556.1| 2-methylthioadenine synthetase [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167776677|gb|ABZ94978.1| 2-methylthioadenine synthetase [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167780354|gb|ABZ98652.1| Conserved hypothetical protein [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
          Length = 429

 Score =  311 bits (797), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 117/431 (27%), Positives = 205/431 (47%), Gaps = 25/431 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    + GC++N +++  M  +   +G+      ++A  IV+NTC +  KA  K  + + 
Sbjct: 2   KIKFHTLGCRLNFFETDGMYTVLKDKGFTLATPDENAQYIVVNTCTVTNKADVKNRNIIR 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                    I+      V V GC A+ + +E+L+  P V  V G      LP  +     
Sbjct: 62  NA-------IRTNPGAKVFVTGCYAETD-KEVLQNIPGVYGVFGNTEKSSLPYQILADWE 113

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           GK  +       D+F    ++  G+ R     A+L IQ+GC++ C++C +P  RG+ +SR
Sbjct: 114 GKSYL--PEKSLDRFSYSDVLPEGHTR-----AYLKIQDGCNRKCSYCKIPAARGLGVSR 166

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
               ++D+ + L DNGV EI L G N+  +R   L+  +  F +LL  + ++    R+R 
Sbjct: 167 KYDDILDQVKYLQDNGVGEIQLTGVNLGWYR---LENGEKGFLNLLEDILKVLEYSRIRL 223

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
           ++  P D+   L+           +LH+P+QSGS +ILK M R +    +R  ++  +S 
Sbjct: 224 SSIEPPDVGSGLLDLM-SHPRFCKFLHVPIQSGSRKILKEMRRTYHPDAFRTRMELAKSK 282

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P++ + +D IVGFP ET+ +F+ T  L+ ++G+A+   F YS R GT   ++ + +  +
Sbjct: 283 LPNLFLGTDVIVGFPSETEVEFQETKQLLIELGFAKLHVFPYSVRKGTTAESLGDPIPGD 342

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK--EKGKLVGRSPWLQSVVLNSK 443
            K  R+L L         S+    +G+  E ++E  G+      L G  P          
Sbjct: 343 EKKRRVLELMALSSILHTSYAKTAIGKTFEAILENDGRLVTDNYLKGHLPDS----FPID 398

Query: 444 NHNIGDIIKVR 454
               G  + VR
Sbjct: 399 TLQKGQFVDVR 409


>gi|239908955|ref|YP_002955697.1| hypothetical protein DMR_43200 [Desulfovibrio magneticus RS-1]
 gi|239798822|dbj|BAH77811.1| hypothetical protein [Desulfovibrio magneticus RS-1]
          Length = 447

 Score =  311 bits (797), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 120/447 (26%), Positives = 188/447 (42%), Gaps = 29/447 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R    S GC  N  D+  +             + + ADL+V+NTC     A E+  + + 
Sbjct: 21  RVHTISLGCPKNRVDTENVLGGLPFAT-TPAATPEAADLVVVNTCSFIAPAVEESVAAIL 79

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                  +  +     ++ V GC+    G+E+    P V++   P     +P  L +A  
Sbjct: 80  EAS---EAIRELSPRPVLAVLGCLPSRFGQELRDGLPEVDIWGLPSELDLIPGRLAKALS 136

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            +    T               G         A+L I EGCD  C +C +P  RG  +S+
Sbjct: 137 AESAAPT---------------GRLASTPPSYAYLKIAEGCDHACRYCTIPSIRGPLVSK 181

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            L  +V+E+R L+D G  E+ ++ Q+V A  G+ L G K     LL  L  + GL  LR 
Sbjct: 182 PLDALVEESRGLLDKGASELVVVAQDVAA-YGRDL-GMKEGLKALLGKLLPLSGLKWLRL 239

Query: 266 TTSHPRDMSDCLIKAHGDLDV-LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
              +P  ++D L+          +PY  +P Q     +L +M R   A     ++ R+R 
Sbjct: 240 LYLYPSGVTDDLLAFLAGAGRPFVPYFDIPFQHVQPDMLAAMGRP-KAASAETVVARVRR 298

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
              D A+ S FIVG PGE  + F   +  V++        F Y    GTP + M  QV  
Sbjct: 299 HFSDAALRSTFIVGLPGEKKEHFETLLRFVNEARLNHVGVFPYHREEGTPAAAMAGQVRS 358

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRS----PWLQSV- 438
           +VKA R+  +    RE      +  VG+  EVL++  H +  G  VGR+    P +  V 
Sbjct: 359 DVKARRVEAVMAAQREISADLLEDWVGRDTEVLVDSVHPEWPGLHVGRTWFQAPEIDGVT 418

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYG 465
            ++      G+++   I D K   L G
Sbjct: 419 YVSGPGVAPGNMVTATIEDSKDYDLVG 445


>gi|309358985|emb|CAP33467.2| hypothetical protein CBG_15101 [Caenorhabditis briggsae AF16]
          Length = 535

 Score =  311 bits (797), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 117/443 (26%), Positives = 213/443 (48%), Gaps = 21/443 (4%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           V Q+ +V+++GC  N  DS  M  +    GY+ +   ++AD+ VLN+C ++  + ++  +
Sbjct: 45  VGQKVWVRTWGCSHNTSDSEYMAGLLHKAGYDVLKEGENADVWVLNSCTVKTPSEQQANN 104

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            + + +              +++AGCV+QA   E   +   V++V G +   R+ E++E 
Sbjct: 105 LVVQGQE---------QGKKIIMAGCVSQAAPSEPWLQ--NVSIV-GVKQIDRIVEVVEE 152

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
              G +V     +  D    L        RK  +   L+I  GC   CT+C     RG  
Sbjct: 153 TLKGNKVRLLTRNRPDALLSLP-----KMRKNELIEVLSISTGCLNNCTYCKTKMARGDL 207

Query: 203 ISRSLSQVVDEAR-KLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           +S  L  +V++AR    D GV E+ L  +++ AW G+ ++       + L  +     ++
Sbjct: 208 VSYPLEDLVEQARAAFHDEGVKELWLTSEDLGAW-GRDINLVLPDLLNALVKVIPDGCMM 266

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           RL  T           I    +   +  +LH+PVQS SD +L  M R ++   + QI D 
Sbjct: 267 RLGMTNPPYILDHLEEIAEILNNPKVYAFLHIPVQSASDAVLTDMKREYSRRHFEQIADY 326

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +    P+I I++D I+ FP ET +DF  +M+LV K  +   F  +Y PR GTP + + ++
Sbjct: 327 MIENVPNIYIATDMILAFPTETLEDFEESMELVRKYKFPSLFINQYYPRSGTPAARL-KK 385

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           +D     +R   + +  R     F +  +G+I  VL+ +   +K   VG +   + +++ 
Sbjct: 386 IDTVEARKRTAAMSELFRS-YTRFTEDRIGEIHNVLVTEIAADKIHGVGHNKSYEQILVP 444

Query: 442 SKNHNIGDIIKVRITDVKISTLY 464
            ++  +G+ I+VRIT V   ++ 
Sbjct: 445 LEHCKMGEWIEVRITSVTKFSMI 467


>gi|255261196|ref|ZP_05340538.1| conserved hypothetical protein [Thalassiobium sp. R2A62]
 gi|255103531|gb|EET46205.1| conserved hypothetical protein [Thalassiobium sp. R2A62]
          Length = 464

 Score =  311 bits (797), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 114/459 (24%), Positives = 198/459 (43%), Gaps = 39/459 (8%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
              + S GC   + DS R+     ++GY        A+ +++NTC   + A  +    +G
Sbjct: 28  TIGMVSLGCPKALVDSERILTRLRAEGYAISPDYSGAEAVIVNTCGFLDSAKAESLDAIG 87

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                            V+V GC+  AE + I    P +  V GPQ Y ++ + +     
Sbjct: 88  EALTQNGK---------VIVTGCLG-AEPDYIREHHPKILAVTGPQQYEQVLDAVHSC-- 135

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                       D F  L    G     R   ++L I EGC+  C FC++P  RG   SR
Sbjct: 136 -------VPPDPDPFIDLLPATGVSLTPRHY-SYLKISEGCNHKCKFCIIPDMRGRLASR 187

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE---------KCTFSDLLYSLSE 256
            +  V+ EA KL++NGV E+ ++ Q+ +A  G     +         +   +DL   L +
Sbjct: 188 PVHAVLREAEKLVENGVNELLVISQDTSA-YGLDRKYDVHPWKDREVRSHITDLTRELGQ 246

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDV-LMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
           +   VRL Y   +P      LI    D +  ++PYL +P Q     +L+ M R   A   
Sbjct: 247 LGAWVRLHYVYPYPHV--RDLIPLMADPENGVLPYLDIPFQHAHPDVLRRMARPAAAART 304

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
              I   R+  P+I + S FIVG+PGET+ +F+  +D +D+    +   F+Y    G   
Sbjct: 305 LDEIAAWRAECPNITLRSTFIVGYPGETEAEFQHLLDWMDEAQLDRVGCFQYENVDGARS 364

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQII---EVLIEKHGKEKGKLVGRS 432
           +++ + V   VK +R     +K +    +  +A VG ++      I++ G    + +  +
Sbjct: 365 NDLPDHVAPEVKQDRWDRFMEKAQAISEAKLEAKVGSVMDVIVDDIDEDGVATCRTMADA 424

Query: 433 PWLQSVVLNSK---NHNIGDIIKVRITDVKISTLYGELV 468
           P +   +   +     ++G+I+ V + +     L+G LV
Sbjct: 425 PEIDGNLFIDEGTSGLSVGEIVSVEVDEAGEYDLWGALV 463


>gi|256822063|ref|YP_003146026.1| MiaB-like tRNA modifying enzyme [Kangiella koreensis DSM 16069]
 gi|256795602|gb|ACV26258.1| MiaB-like tRNA modifying enzyme [Kangiella koreensis DSM 16069]
          Length = 447

 Score =  311 bits (797), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 126/453 (27%), Positives = 218/453 (48%), Gaps = 36/453 (7%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
             + + GC++N  +     + F   G    + +D ADLIVLNTC +  +AA K    + R
Sbjct: 3   VHLSALGCRLNEAELQNWANSFQRLGLSLTSEVDAADLIVLNTCAVTAEAARKSRQTVRR 62

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
                    +       VV GC A  E EE+ +    V++VV  +       L+E+A   
Sbjct: 63  FH-------RANPQARKVVTGCYASLEPEEVAQIM-GVDLVVVNEDKDA---LVEQA--- 108

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           K+++D     E   E         NR+R   AF+ IQ+GC   CT+C+V   RG E SR+
Sbjct: 109 KQLLDIPAMPEFATEPGESALFARNRER---AFIKIQDGCRYRCTYCIVTVARGEERSRT 165

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
           +  +VDE  +L   GV EI L G +V    G  +D    +  +L+ ++     + R+R+ 
Sbjct: 166 IQDLVDEVNQLHAEGVQEIVLAGVHVGG-YGSDID---SSLYELVETILRDTDMPRIRFA 221

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
           +  P D+ +   +   +   LMP++HLP+QSG+D +L+ M+RR     + +++++ ++  
Sbjct: 222 SVEPWDLGENFFELFAN-PRLMPHMHLPIQSGADTVLRRMSRRCKTSSFSELVNQAKTQV 280

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
               +++D IVGFPGETD++F  TM  ++++G+     F YS R GT  + +  ++ + +
Sbjct: 281 AGFNVTTDVIVGFPGETDEEFELTMQYIEEVGFGHIHIFTYSDREGTKAARLPGKITKEI 340

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG----KEKGKLVGRSPWLQSVVLNS 442
           K ER   L +     +V+  +  VG I+ VL E       +   +  G +P    +   +
Sbjct: 341 KKERSHRLHELAARLKVAELERQVGLIVPVLWESSNQYTEEGNQRYFGYTPNYHKI---A 397

Query: 443 KNHNIG-----DIIKVRI--TDVKISTLYGELV 468
                G      I+  +I   D +   L G ++
Sbjct: 398 TEIPPGLSPERTILNTKIESVDAEHGYLNGLII 430


>gi|159479894|ref|XP_001698021.1| hypothetical protein CHLREDRAFT_120503 [Chlamydomonas reinhardtii]
 gi|158273820|gb|EDO99606.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 420

 Score =  311 bits (796), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 107/440 (24%), Positives = 196/440 (44%), Gaps = 37/440 (8%)

Query: 32  YGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLK 91
            GC  NV D   +       G+E  +  +++D I++NTC   E A  +    +    +L 
Sbjct: 4   LGCPKNVVDGEVLLGDLARAGFEVTDDHEESDAIIVNTCAFVEDAKSESLEAIVEAASLN 63

Query: 92  NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVD 151
                +G    +VV GC+AQ    ++    P  ++VVG Q+Y  L   L++         
Sbjct: 64  E----DGRRRKLVVTGCLAQRYSSQLAADLPEADLVVGFQSYGNLAASLQK--------- 110

Query: 152 TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS--Q 209
               +E   E L+I +         +A+L + EGC+  CTFC +P  R   ++      +
Sbjct: 111 -SMGMEVTPEALAIAEA--------SAYLRVAEGCNHACTFCAIPGFRCPTLTCPTDLSR 161

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSH 269
           +                ++  + +A R  G D      + LL  L +++GL  +R   ++
Sbjct: 162 LQAHTHTHTHTSFTHAHIVHTHTHARRRDGRD-----LAQLLRELGKLEGLRWIRILYAY 216

Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329
           P   +D LI    +   +  YL +P+Q  ++  L +MNR        +++ ++R   P +
Sbjct: 217 PSYFNDELIDEIANNPKVCKYLDMPLQHIANLTLLAMNRP-PKEHTTKLLAKLRERIPGL 275

Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAE 389
           A+ + FI GFPGE+D+  R  +D V    + +   F +S   GTP + M EQV    +  
Sbjct: 276 ALRTTFISGFPGESDEQHRELVDFVKTFKFERMGCFAFSEEDGTPAATMPEQVPRRQRER 335

Query: 390 RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVL--NSK 443
           R   L    +     + +  VG+ ++VL+E +  + G L+GR+    P +  +V    ++
Sbjct: 336 RRDELISLQQRIGEEWAEGLVGREVDVLVEGYN-DDGWLIGRTQWDAPDVDPLVFLTEAE 394

Query: 444 NHNIGDIIKVRITDVKISTL 463
           + ++G I +  +T   +  L
Sbjct: 395 DESVGSIRRCLVTSNSLFDL 414


>gi|159036993|ref|YP_001536246.1| MiaB-like tRNA modifying enzyme YliG [Salinispora arenicola
           CNS-205]
 gi|238066585|sp|A8M773|RIMO_SALAI RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|157915828|gb|ABV97255.1| MiaB-like tRNA modifying enzyme YliG [Salinispora arenicola
           CNS-205]
          Length = 507

 Score =  311 bits (796), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 115/508 (22%), Positives = 197/508 (38%), Gaps = 70/508 (13%)

Query: 13  MVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHI 72
           MVS         +R  + + GC  N  DS  +     + G++     + A+++V+NTC  
Sbjct: 1   MVSATSASPADGRRVALLTLGCARNEVDSEELAARLHADGWQVTTDGEGAEVVVVNTCGF 60

Query: 73  REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT 132
            EKA +     L                  VV AGC+A+  G E+    P    V+    
Sbjct: 61  VEKAKQDSIQTLLAAAE---------TGAKVVAAGCMAERYGRELADSLPEAQAVLSFDD 111

Query: 133 YYRLPELLERARFGKRVVDTDYSVEDKFERLSIVD------------------------- 167
           Y  + + L     G   +D  ++  D+ E L +                           
Sbjct: 112 YPDISDRLGAVLAG-TAIDA-HTPRDRRELLPLTPVRRREAAVSLPGHGTRAAAAGPGGR 169

Query: 168 --------------GGYNRKR---GVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
                             R+R   G  A L +  GCD+ C FC +P  RG  +SR   ++
Sbjct: 170 SAPVEVDEHTPAHLRPVLRRRLDTGPVASLKLASGCDRRCAFCAIPAFRGAFVSRPPEEL 229

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270
           + EA  L   GV E+ L+ +N ++  GK L G+      LL  L+ + G+VR+R +   P
Sbjct: 230 LAEAEWLARTGVRELVLVSEN-SSSYGKDL-GDPRALEKLLPQLAAVDGIVRVRASYLQP 287

Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330
            +    L++A      +  Y  L  Q  S+ +L+ M R  +   +  ++  +R++ P+  
Sbjct: 288 AETRPGLVEAIATTPGVAAYFDLSFQHSSEPVLRRMRRFGSTERFLDLLASVRALAPEAG 347

Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER 390
             S+FIVGFPGET  D    +  +++        F YS   GT  + +  +V       R
Sbjct: 348 ARSNFIVGFPGETRADVAELVRFLNEARLDAIGVFDYSDEDGTEAAGLSGKVSATTVKRR 407

Query: 391 LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQS----VVLNS 442
              L     E      +  +G  ++VL++    + G + GR    +P +      V  + 
Sbjct: 408 YDRLGALADELCAQRAEQRLGSTVQVLVD--SVDDGVVEGRAAHQAPEVDGSTTLVAPSG 465

Query: 443 KN-----HNIGDIIKVRITDVKISTLYG 465
                     GD+++  +T  +   L  
Sbjct: 466 GGVDLAALRPGDLVRCTVTATEGVDLVA 493


>gi|77464514|ref|YP_354018.1| MiaB-like radical SAM protein [Rhodobacter sphaeroides 2.4.1]
 gi|77388932|gb|ABA80117.1| MiaB-like Radical SAM protein [Rhodobacter sphaeroides 2.4.1]
          Length = 425

 Score =  311 bits (796), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 124/444 (27%), Positives = 199/444 (44%), Gaps = 36/444 (8%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
             + GC++N Y++  M+++  + G   V++      +V+NTC +  +A  K    + R+R
Sbjct: 6   FSTLGCRLNAYETEAMKELATAAG---VDNA-----VVVNTCAVTAEAVRKAKQEIRRLR 57

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA----- 143
                  +E     ++V GC AQ E        P V+ V+G     +       A     
Sbjct: 58  -------RENPQATIIVTGCAAQTEPAT-FSAMPEVDRVIGNTEKMQPATWAAMAPDLIG 109

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
              +  VD   SV +    L     G+ R R   A++ +Q GCD  CTFC++PY RG   
Sbjct: 110 ETERVQVDDILSVRETAGHLI---DGFGRHR---AYVQVQNGCDHRCTFCIIPYGRGNSR 163

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           S     VV++ R+L+D G  E+ L G ++ +W G  L         ++  L  +  L RL
Sbjct: 164 SVPAGVVVEQIRRLVDRGFAEVVLTGVDLTSW-GADLPAAPRLGDLVMRILRLVPDLARL 222

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R ++    +  + L+ A      LMP+LHL +Q G D ILK M RRH   +  +  +  R
Sbjct: 223 RISSIDSIEADEALMGAIATEARLMPHLHLSLQHGDDLILKRMKRRHLRDDAIRFCEEAR 282

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
            +RPDI   +D I GFP ET+  F  ++ LV++ G      F +SPR GTP + M  Q+ 
Sbjct: 283 RLRPDIVFGADIIAGFPTETEAAFANSLKLVEECGLTFLHVFPFSPRQGTPAARMP-QLA 341

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
             V  ER   L+     + ++  +   G+   VL+E         +GR+     V   + 
Sbjct: 342 GPVIRERAAQLRALGEARLLAHLEGERGRTHRVLMEGP------RLGRTEQFTEVAFAAD 395

Query: 444 NHNIGDIIKVRITDVKISTLYGEL 467
               G I+   +T      L   +
Sbjct: 396 QPE-GRILSATVTGHAEGRLTATV 418


>gi|195150351|ref|XP_002016118.1| GL10666 [Drosophila persimilis]
 gi|194109965|gb|EDW32008.1| GL10666 [Drosophila persimilis]
          Length = 553

 Score =  311 bits (796), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 125/463 (26%), Positives = 214/463 (46%), Gaps = 26/463 (5%)

Query: 12  HMVSQIVDQCIVP--QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNT 69
                 + + ++P  Q+ FVK++GC  N  DS  M     + GY+     D+ADL +LN+
Sbjct: 57  PTPRPTIYESVIPGTQKVFVKTWGCAHNNSDSEYMAGQLAAYGYKLSGK-DEADLWLLNS 115

Query: 70  CHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG 129
           C ++  + +   + +                  VVVAGCV Q   +    R      V+G
Sbjct: 116 CTVKNPSEDTFRNEIE---------SGMSNGKHVVVAGCVPQGAPKSDYLRG---LSVIG 163

Query: 130 PQTYYRLPELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
            Q   R+ E++E    G  V +  +  V  +    + +     RK  +   ++I  GC  
Sbjct: 164 VQQIDRVVEVVEETLKGHSVRLLQNKKVHGRRVAGAPLSLPKVRKNPLIEIISINTGCLN 223

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS 248
            CT+C   + RG   S    ++VD AR+    G CEI L  ++  A  G+ +     +  
Sbjct: 224 QCTYCKTKHARGDLASYPPEEIVDRARQSFAEGCCEIWLTSEDTGA-YGRDI---GSSLP 279

Query: 249 DLLYSLSE-IKGLVRLRYTTSHPRDMSDCLIKAHG--DLDVLMPYLHLPVQSGSDRILKS 305
           +LL+ L E I     LR   ++P  + + L +         +  +LH+PVQSGSD +L  
Sbjct: 280 ELLWKLVEVIPEHCMLRVGMTNPPYILEHLEEVAKVLQHPRVYAFLHVPVQSGSDSVLGE 339

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           M R +   ++  ++D +R   P + I++D I GFP ET++DF  TM L  +  +   F  
Sbjct: 340 MKREYCRKDFEHVVDFLRERVPGVTIATDIICGFPTETEEDFEETMTLCGRYRFPSLFIN 399

Query: 366 KYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK 425
           ++ PR GTP + M E++  N+  +R   L               VG++  VL+ +   +K
Sbjct: 400 QFFPRPGTPAAKM-ERIPANLVKKRTKRLTDLFY--SYEPYAQRVGEMYTVLVTEISHDK 456

Query: 426 GKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
              VG +   + V+L  +++ +G  + VRIT V   ++ GE++
Sbjct: 457 LHYVGHNKSYEQVLLPMRDNLLGTRVHVRITSVSKFSMVGEIL 499


>gi|307294713|ref|ZP_07574555.1| MiaB-like tRNA modifying enzyme [Sphingobium chlorophenolicum L-1]
 gi|306879187|gb|EFN10405.1| MiaB-like tRNA modifying enzyme [Sphingobium chlorophenolicum L-1]
          Length = 443

 Score =  311 bits (796), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 126/460 (27%), Positives = 204/460 (44%), Gaps = 48/460 (10%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           + + GC++N+ +S  + +M   Q           DLIV+N+C +  +A  +    +    
Sbjct: 6   IITLGCRLNIAESEAIREMAGGQD----------DLIVVNSCAVTAEAVRQTRQAI---- 51

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLP----------- 137
                  ++  D  ++V GC AQ E E     +  V+ V+G +                 
Sbjct: 52  ---RRARRDRPDARIMVTGCAAQTEPETFAAMA-EVDAVIGNREKMTPSPYSSSQRKLGS 107

Query: 138 -ELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRK----------RGVTAFLTIQEGC 186
            E+               + E   +++ + D    R+              AFL +Q GC
Sbjct: 108 QEIGHSVGPEIPAFAGMTNEEGAAQKVQVSDIMAVRETAPHMASAFAEHARAFLEVQNGC 167

Query: 187 DKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT 246
           D  CTFC++PY RG   S     V+D+A+KL+D G  EI L G +V +  G  L G    
Sbjct: 168 DHRCTFCIIPYGRGNSRSVPAGAVIDKAKKLVDAGYREIVLTGVDVTS-YGPDLPGAPSL 226

Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306
              +   L  + GL RLR ++    ++ + L         +MP+LHL +Q+G D ILK M
Sbjct: 227 GLLIERILKGVPGLSRLRLSSLDSVEIDERLFDLLAHEPRMMPHLHLSLQAGDDMILKRM 286

Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
            RRH+  E  +I++R+++ RPDI+I +D I GFP E +  F  ++ LV++        F 
Sbjct: 287 KRRHSRAEAIRIVERLKAARPDISIGADIIAGFPTEDEAMFENSLRLVEQCAIVHGHIFP 346

Query: 367 YSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG 426
           YSPR GTP + M  QVD      R   L+     Q+  +  + +G    VL+E++G    
Sbjct: 347 YSPRTGTPAARMP-QVDRATIKARAARLRSACEAQREGWLRSLIGSTQSVLVERNG---- 401

Query: 427 KLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGE 466
            L G +     V   +       II  +IT ++   L  +
Sbjct: 402 -LSGHAENFAPVRF-ATPQTPSSIIHAKITGLENGALIAQ 439


>gi|115522348|ref|YP_779259.1| MiaB-like tRNA modifying enzyme [Rhodopseudomonas palustris BisA53]
 gi|115516295|gb|ABJ04279.1| MiaB-like tRNA modifying enzyme [Rhodopseudomonas palustris BisA53]
          Length = 421

 Score =  311 bits (796), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 126/443 (28%), Positives = 200/443 (45%), Gaps = 32/443 (7%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
             V ++GC++N ++S  +     + G          D IV+N+C +  +A  +    + R
Sbjct: 3   VEVLTFGCRLNTHESELIRREAEAAGCV--------DTIVVNSCAVTNEAVAQARQSIRR 54

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE-RARF 145
           ++       +E     +VV GC AQ E   +    P V+ V+G     R       RA F
Sbjct: 55  LK-------REHPQARIVVTGCAAQTETA-MFGAMPEVDRVLGNADKLRGEAWRATRAAF 106

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRG-----VTAFLTIQEGCDKFCTFCVVPYTRG 200
                D+        + +++ +   +   G        F+ +Q GCD  CTFC++P+ RG
Sbjct: 107 DNAGPDSSTDKIAVADIMAVREMAPHLIEGFQRGLPRVFVQVQNGCDHRCTFCIIPFGRG 166

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
              S     V+++ R L   G  EI L G ++ +  G  L G     +     L E+  L
Sbjct: 167 PSRSLPPGAVIEQVRTLAARGHAEIVLTGVDLTS-YGCDLSGAPSLGALTKLILREVPEL 225

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            RLR ++    +    L+ A  + D LMP+LHL +QSG D ILK M RRH+  +   +  
Sbjct: 226 RRLRLSSIDSIEADRDLLDAVANEDRLMPHLHLSLQSGDDLILKRMKRRHSRADSVALCA 285

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
            +R +RPDI + +D I GFP ETD  F  ++DL++  G +    F YSPR GTP + M  
Sbjct: 286 ELRRLRPDIVLGADLIAGFPTETDAAFTRSLDLIEDCGLSLLHVFPYSPRPGTPAAKMPP 345

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440
            +D  V  ER   L+           DA +GQ  +VLIE          GR+     V +
Sbjct: 346 -LDGVVIKERAKRLRAAGEAALRRRIDAEIGQSRQVLIEST------TQGRTEHFLPVAI 398

Query: 441 NSKNHNIGDIIKVRITDVKISTL 463
             +    G+++++ I     + L
Sbjct: 399 EGET--PGEVMRMTIAGHDGARL 419


>gi|308801795|ref|XP_003078211.1| CDK5 activator-binding protein (ISS) [Ostreococcus tauri]
 gi|116056662|emb|CAL52951.1| CDK5 activator-binding protein (ISS) [Ostreococcus tauri]
          Length = 558

 Score =  311 bits (796), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 116/450 (25%), Positives = 200/450 (44%), Gaps = 30/450 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + FV ++GC  N  DS  M     S GYE V    DAD  ++NTC ++  +   + + L 
Sbjct: 34  KIFVHTFGCSHNHSDSEFMAGQLQSYGYELVKDASDADGWLVNTCTVKNPSQSAMNTVLE 93

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R +    +         ++VAGCV Q  G++  +    V++ +G     R+ E +ER   
Sbjct: 94  RGKAANKA---------LLVAGCVPQ--GDKGAKELKDVSL-LGVTQIDRVVEAMERTLA 141

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G    DT   +E K   L  +D    R+      L +  GC   CT+C   + RG   S 
Sbjct: 142 G----DTVRMLEKK--TLPRLDLPKVRRNEFVEILPLSTGCLGACTYCKTKHARGDLGSY 195

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            +S +V    + I  GV E+ L  ++  A  G  L  +       + ++    G V LR 
Sbjct: 196 EISALVSRVEQAISEGVSEVWLSSEDTGA-YGIDLGTDVAALFRAITAVLPTDGSVMLRL 254

Query: 266 TTSHPRDMSDCLIKAHGD---LDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
             ++P  +   L  A  +      +  ++H+PVQSGS+ +L++M R +T  E+R + D +
Sbjct: 255 GMTNPPYILAHL-DAVAEAMRHPAVYAWMHIPVQSGSNAVLEAMKREYTVEEFRTVCDTL 313

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
               P + I++D I GFPGETD+ +R TM L+++  + +    ++ PR GTP + M ++V
Sbjct: 314 LEAVPGMVIATDVICGFPGETDEQWRETMQLIEEYKFPEVHISQFYPRPGTPAARM-KRV 372

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
              +   R   L      +    +   VG+   V +    ++   LV  +     ++L  
Sbjct: 373 PTQIVKGRSRELTVLF--ESYQPHQHLVGKTERVWVSDIARDGTSLVAHTKNYTQILLPG 430

Query: 443 KN----HNIGDIIKVRITDVKISTLYGELV 468
                 H +G    V I +    +    ++
Sbjct: 431 GEDQRAHLMGRSAMVEIYESSRWSCKARVL 460


>gi|269303354|gb|ACZ33454.1| RNA modification enzyme, MiaB family [Chlamydophila pneumoniae
           LPCoLN]
          Length = 421

 Score =  311 bits (796), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 117/445 (26%), Positives = 212/445 (47%), Gaps = 34/445 (7%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD-DADLIVLNTCHIREKAAEKVYSFL 84
            F +   GC++N Y+     D     GY+ V   +  ADL ++NTC +   A       +
Sbjct: 9   TFKLVCLGCRVNQYEVQAYRDQLTILGYQEVLDSEIPADLCIINTCAVTASAESSGRHAV 68

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            ++        ++     +VV GC+ +++ E          +V   +             
Sbjct: 69  RQL-------CRQNPTAHIVVTGCLGESDKEFFASLDRQCTLVSNKEKS----------- 110

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
              R+++  +S +  F    I    ++ +    AF+ +Q+GC+ FC++C++PY RG  +S
Sbjct: 111 ---RLIEKIFSYDTTFPEFKI----HSFEGKSRAFIKVQDGCNSFCSYCIIPYLRGRSVS 163

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R   +++ E   ++D G  E+ + G NV    G   DGE+ + + L+  + +I G+ R+R
Sbjct: 164 RPAEKILAEIAGVVDQGYREVVIAGINV----GDYCDGER-SLASLIEQVDQIPGIERIR 218

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
            ++  P D+++ L +A        P  HL +QSGS+ ILK MNR+++  ++   +++ R+
Sbjct: 219 ISSIDPDDITEDLHRAITSSRHTCPSSHLVLQSGSNSILKRMNRKYSRGDFLDCVEKFRA 278

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             P  A ++D IVGFPGE+D DF  T+ +++ +G+ +  SF +S R  T       Q+  
Sbjct: 279 SDPRYAFTTDVIVGFPGESDQDFEDTLRIIEDVGFIKVHSFPFSARRRTKAYTFDNQIPN 338

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN-SK 443
            V  ER   L +  +          +G+  EVL+EK        +G SP+ + V      
Sbjct: 339 QVIYERKKYLAEVAKRVGQKEMMKRLGETTEVLVEKVT--GQVAMGHSPYFEKVSFPVVG 396

Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468
              I  ++ VR+  V+   L GE+V
Sbjct: 397 TVAINTLVSVRLDRVEEEGLIGEIV 421


>gi|125807910|ref|XP_001360562.1| GA19679 [Drosophila pseudoobscura pseudoobscura]
 gi|121988829|sp|Q291H5|CDKAL_DROPS RecName: Full=CDKAL1-like protein
 gi|54635734|gb|EAL25137.1| GA19679 [Drosophila pseudoobscura pseudoobscura]
          Length = 553

 Score =  310 bits (795), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 124/463 (26%), Positives = 214/463 (46%), Gaps = 26/463 (5%)

Query: 12  HMVSQIVDQCIVP--QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNT 69
                 + + ++P  Q+ FVK++GC  N  DS  M     + GY+     D+ADL +LN+
Sbjct: 57  PTPRPTIYESVIPGTQKVFVKTWGCAHNNSDSEYMAGQLAAYGYKLSGK-DEADLWLLNS 115

Query: 70  CHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG 129
           C ++  + +   + +                  +VVAGCV Q   +    R      V+G
Sbjct: 116 CTVKNPSEDTFRNEIE---------SGMSNGKHIVVAGCVPQGAPKSDYLRG---LSVIG 163

Query: 130 PQTYYRLPELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
            Q   R+ E++E    G  V +  +  V  +    + +     RK  +   ++I  GC  
Sbjct: 164 VQQIDRVVEVVEETLKGHSVRLLQNKKVHGRRVAGAPLSLPKVRKNPLIEIISINTGCLN 223

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS 248
            CT+C   + RG   S    ++VD AR+    G CEI L  ++  A  G+ +     +  
Sbjct: 224 QCTYCKTKHARGDLASYPPEEIVDRARQSFAEGCCEIWLTSEDTGA-YGRDI---GSSLP 279

Query: 249 DLLYSLSE-IKGLVRLRYTTSHPRDMSDCLIKAHG--DLDVLMPYLHLPVQSGSDRILKS 305
           +LL+ L E I     LR   ++P  + + L +         +  +LH+PVQSGSD +L  
Sbjct: 280 ELLWKLVEVIPEHCMLRVGMTNPPYILEHLEEVAKVLQHPRVYAFLHVPVQSGSDSVLGE 339

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           M R +   ++  ++D +R   P + I++D I GFP ET++DF  TM L  +  +   F  
Sbjct: 340 MKREYCRKDFEHVVDFLRERVPGVTIATDIICGFPTETEEDFEETMTLCGRYRFPSLFIN 399

Query: 366 KYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK 425
           ++ PR GTP + M E++  N+  +R   L               VG++  VL+ +   +K
Sbjct: 400 QFFPRPGTPAAKM-ERIPANLVKKRTKRLTDLFY--SYEPYAQRVGEMYTVLVTEISHDK 456

Query: 426 GKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
              VG +   + V+L  +++ +G  + VRIT V   ++ GE++
Sbjct: 457 LHYVGHNKSYEQVLLPMRDNLLGTRVHVRITSVSKFSMVGEIL 499


>gi|45658385|ref|YP_002471.1| hypothetical protein LIC12543 [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|81567903|sp|Q72PC8|RIMO_LEPIC RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|45601628|gb|AAS71108.1| conserved hypothetical protein [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 437

 Score =  310 bits (795), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 107/451 (23%), Positives = 207/451 (45%), Gaps = 19/451 (4%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + ++F++ + GC  N+ DS+ M      +G+   +  +++D   +NTC   + A E+   
Sbjct: 1   MDKKFYITTLGCPKNIADSMSMHHSLLEEGFTPASLPEESDFHFINTCTFIQSATEETIQ 60

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +     +K           +VV GC A+   + I    P V++  G   Y +  ++L  
Sbjct: 61  TILSAAQVKKQ-----NHQKLVVVGCFAERYPDNIHSEIPEVDLFFGTGKYSQAGKILRE 115

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
                     +++ +   ER  +     N  +   A++ + +GC++ C+FC++P  RG  
Sbjct: 116 KFPELSPSQLEFN-DSLLERWKLSSKIENYSKPY-AYVKVSDGCNRGCSFCIIPSFRGKF 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
               L  ++ +  + I  G  EI L+ Q+   + G+  +       D++  ++EI  L  
Sbjct: 174 AESPLDDILRDTNRAIRAGAKEICLVSQDT-VYYGRDSE----ILLDMVRKVAEIDSLEI 228

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LR    +P   ++ LI+  G+   + PYL  P+Q  S +ILK MNR   +  ++ +    
Sbjct: 229 LRLLYLYPDKKTEKLIRLMGETSKIAPYLESPLQHVSSKILKVMNRTGESSYFKDLFSLA 288

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R V+P + I + FI+G+PGE  +D    +  ++     +   F YSP+ GT G+ + + V
Sbjct: 289 REVKPGLEIRTSFIIGYPGEEPEDVDQILRFIEDTRPEKVNLFSYSPQEGTKGAQLKQTV 348

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSV 438
            E  K++R+  ++    E     +++ +G+  + +++    E G+ V R    +P +  V
Sbjct: 349 SEKEKSKRINLIRDSHLEILEEIHESRIGRTYDAIVDGI--EDGQAVVRRFQDAPEMDEV 406

Query: 439 VLNSK-NHNIGDIIKVRITDVKISTLYGELV 468
           V     +   G I KVRI       + G  V
Sbjct: 407 VYVDDVSLLPGRIGKVRIDSFYEYDMNGTWV 437


>gi|329113598|ref|ZP_08242378.1| Putative methylthiotransferase [Acetobacter pomorum DM001]
 gi|326697120|gb|EGE48781.1| Putative methylthiotransferase [Acetobacter pomorum DM001]
          Length = 414

 Score =  310 bits (795), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 116/424 (27%), Positives = 193/424 (45%), Gaps = 31/424 (7%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           + ++GC++N ++S  M +   S            ++I++NTC +  +A  +    + R  
Sbjct: 6   ILTFGCRLNTWESEVMRNHAASLD----------NVIIVNTCAVTGEAERQARQAIRRAH 55

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
                  +E  D  +VV GC AQ    E     P V  V+G +   +       A     
Sbjct: 56  -------RENPDARIVVTGCAAQINP-ESWSDLPGVARVLGNEEKLKAESWSAAALSQPL 107

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
            V    + ++    L     G  R     AF+ +Q+GC+  CTFC++P+ RG   S  + 
Sbjct: 108 AVSDIMAAKETAAHLVTEFAGRTR-----AFVQVQQGCNHRCTFCIIPFGRGPSRSVPVG 162

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
            VV++ R L+ +G  E+ L G ++ +W G+ L G+          L  +  L R+R ++ 
Sbjct: 163 AVVEQVRALVQSGYREVVLTGVDMTSW-GEDLPGKPVLGQLCRRVLRLVPELERMRLSSV 221

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
            P ++ + + +   +    MPYLHL +Q+GSD ILK M RRH   +  ++++R RS+RPD
Sbjct: 222 DPVEIDEDIWQLLAEEPRFMPYLHLSLQAGSDLILKRMKRRHLVADAARVVERARSLRPD 281

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           I I +D I GFP E +  F  T + + +        F YS R GTP + M   V    + 
Sbjct: 282 IGIGADIIAGFPTEDESLFEETRNFLAQQALPYLHVFPYSERPGTPAARMR-AVPVPERK 340

Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIG 448
            R   L++        + ++ +GQ + VL+E          G S     V L      +G
Sbjct: 341 ARAAQLREVGAVSAARYYESLIGQPLRVLMETP------TTGHSEQFAPVRLAQGEAEVG 394

Query: 449 DIIK 452
           +II 
Sbjct: 395 EIIT 398


>gi|308497879|ref|XP_003111126.1| hypothetical protein CRE_03881 [Caenorhabditis remanei]
 gi|308240674|gb|EFO84626.1| hypothetical protein CRE_03881 [Caenorhabditis remanei]
          Length = 560

 Score =  310 bits (795), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 117/450 (26%), Positives = 216/450 (48%), Gaps = 23/450 (5%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           V Q+ +V+++GC  N  DS  M  +    GY+ +   + AD+ +LN+C ++  + ++  +
Sbjct: 45  VGQKVWVRTWGCSHNTSDSEYMAGLLQQAGYDVLKEGEAADVWILNSCTVKTPSEQQANN 104

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            + + +              +++AGCV+QA   E   +   V++V G +   R+ E++E 
Sbjct: 105 LVVQGQE---------QGKKIIMAGCVSQAAPSEPWLQ--NVSIV-GVKQIDRIVEVVEE 152

Query: 143 ARFGKRVVDTDYSVEDKFERL-------SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
              G +V+ T         RL       +++     RK  +   L+I  GC   CT+C  
Sbjct: 153 TLKGNKVLPTILRTSRLHVRLLTRNRPDALLSLPKMRKNELIEVLSISTGCLNNCTYCKT 212

Query: 196 PYTRGIEISRSLSQVVDEAR-KLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL 254
              RG  +S  L  +V++AR    D GV E+ L  +++ AW G+ ++       + L  +
Sbjct: 213 KMARGDLVSYPLEDLVEQARAAFHDEGVKELWLTSEDLGAW-GRDINLVLPDLLNALVKV 271

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
                ++RL  T           I    +   +  +LH+PVQS SD +L  M R ++   
Sbjct: 272 IPDGSMMRLGMTNPPYILDHLEEIAEILNHPKVYAFLHIPVQSASDAVLTDMKREYSRRH 331

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
           + QI D +    P+I I++D I+ FP ET +DF  +M+LV K  +   F  +Y PR GTP
Sbjct: 332 FEQIADYMIKHVPNIYIATDMILAFPTETLEDFEESMELVRKYKFPSLFINQYYPRSGTP 391

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPW 434
            + + +++D     +R   + +  R     F +  +G+I  VL+ +   +K   VG +  
Sbjct: 392 AARL-KKIDTIEARKRTAAMSELFRS-YTRFTEDRIGEIHNVLVTEVAADKLHGVGHNKS 449

Query: 435 LQSVVLNSKNHNIGDIIKVRITDVKISTLY 464
            + +++  ++  +G+ I+VRIT V   ++ 
Sbjct: 450 YEQILVPLEHCKMGEWIEVRITSVTKFSMI 479


>gi|312114980|ref|YP_004012576.1| MiaB-like tRNA modifying enzyme [Rhodomicrobium vannielii ATCC
           17100]
 gi|311220109|gb|ADP71477.1| MiaB-like tRNA modifying enzyme [Rhodomicrobium vannielii ATCC
           17100]
          Length = 417

 Score =  310 bits (795), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 124/444 (27%), Positives = 199/444 (44%), Gaps = 28/444 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
              V ++GC++N Y+S   +      G          D +++NTC +  +A  +    + 
Sbjct: 2   TVDVITFGCRLNTYESEVAKKHAQDAGVT--------DAVIVNTCAVTGEAVRQARQAIR 53

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           ++R       +E     ++V GC AQ E E         + V+G          L  A  
Sbjct: 54  KLR-------RERPGAKIIVTGCAAQIEPETFAD-MDEADHVIGNGEKTSAATFLSLAAG 105

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
               V  +     +     ++ G  +R R   A++ +Q GCD  CTFCV+P+ RG   S 
Sbjct: 106 DLARVRVNDIASVRETAPHMISGFGSRAR---AYVEVQNGCDHRCTFCVIPFGRGPSRSV 162

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
              +VV + R L+++G  E+ L G ++ +  G  L GE      +   L  +  L RLR 
Sbjct: 163 PAGEVVHQIRALVEDGYREVVLTGVDLTS-YGADLPGEMKLGRLVRTVLRLVPELPRLRI 221

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
           ++    +  D LI A  + + LMP+LHL +QSG + ILK M RRH   +  +    +R +
Sbjct: 222 SSIDTMEADDALIDAFAEEERLMPHLHLSLQSGDNLILKRMKRRHAREDVIRFCREMREI 281

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
           RPD+   +D I GFP E +  F  T+ L D+ G +    F YSPR  T  + M  Q+D  
Sbjct: 282 RPDMVFGADLIAGFPTEDEAMFENTIRLADECGLSFMHVFPYSPRPKTAAARMP-QLDRA 340

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445
           +  ER   L+ K   +  +      G++ EVL+E+        VGR+P    + +     
Sbjct: 341 LVKERAARLRGKADTRLGTHLADETGKVFEVLMERE------RVGRTPGFTEIEIAGGAE 394

Query: 446 NIGDIIKVRITDVKISTLYGELVV 469
             G I++ R T      L GE + 
Sbjct: 395 R-GGIVRARATGHDKRHLIGECLA 417


>gi|332877549|ref|ZP_08445296.1| tRNA methylthiotransferase YqeV [Capnocytophaga sp. oral taxon 329
           str. F0087]
 gi|332684655|gb|EGJ57505.1| tRNA methylthiotransferase YqeV [Capnocytophaga sp. oral taxon 329
           str. F0087]
          Length = 447

 Score =  310 bits (795), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 116/455 (25%), Positives = 210/455 (46%), Gaps = 27/455 (5%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
            +  +  + GC++N  ++  +  +    G   V + + AD+ V+NTC + E A  K    
Sbjct: 10  KKAVYF-TLGCKLNFAETSTIGRLLKEMGVRTVRAGERADICVVNTCSVTEVADHKCRQA 68

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           + ++       +++     VVV GC AQ + E++      V++V+G +    +   LE  
Sbjct: 69  IHKL-------VRQHPGAFVVVTGCYAQLKPEQV-SAIDGVDLVLGAEQKGDILRYLEER 120

Query: 144 R----FGKRVVDTDYS----VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
                  +++ D ++                    +R R    FL +Q+GCD +CT+C +
Sbjct: 121 LPLLPAERKLADAEHEAYTVPTKDIHTFVPSCSCGDRTR---YFLKVQDGCDYYCTYCTI 177

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
           PY RG   + S++ +V +A +    G  EI L G N+    G        +F DL+ +L 
Sbjct: 178 PYARGRSRNGSIASLVRQAEQAASEGGREIVLTGVNI----GDFGKTTGESFLDLVKALD 233

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
            ++G+ R R ++  P  +++ ++    +    MP+ H+P+QSGSD +LK M RR+T   +
Sbjct: 234 RVEGIARYRISSIEPNLLTEEVLAYCAESRAFMPHFHIPLQSGSDEVLKLMRRRYTTNFF 293

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
            + I R++ + PD  +  D IVG  GET++ F    + +  +  +Q   F YS R GT  
Sbjct: 294 AEKISRVKELMPDAFVGVDVIVGTRGETEECFEEAFEFIRSLDVSQLHVFSYSERPGTMA 353

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWL 435
             +   V    K  R   L +    +  +F    +G   EVL+E+  + +G + G +   
Sbjct: 354 LKIEHSVSPEEKHRRSQRLLELSDAKWEAFYRRYIGTEAEVLLER-SRTEGVMHGFTANY 412

Query: 436 QSVVLNSKNHNIGDIIKVRITD--VKISTLYGELV 468
             V L  + +    I++VR+ D     S L   L+
Sbjct: 413 IRVELPVEGNLDNQIVRVRLGDFNADRSALRATLL 447


>gi|218282363|ref|ZP_03488645.1| hypothetical protein EUBIFOR_01227 [Eubacterium biforme DSM 3989]
 gi|218216649|gb|EEC90187.1| hypothetical protein EUBIFOR_01227 [Eubacterium biforme DSM 3989]
          Length = 432

 Score =  310 bits (795), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 115/425 (27%), Positives = 198/425 (46%), Gaps = 18/425 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +F + + GC++N Y+S          GYE+V+     D+ ++NTC +   AA K    + 
Sbjct: 9   KFSIITLGCKVNAYESQYYAGQLEELGYEQVSPEKACDICIINTCTVTNTAASKSRQKIH 68

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
             + +         + L VV GC  Q   EE  +     +++VG +    L  L+++A  
Sbjct: 69  YAKRM-------NPNALCVVVGCFVQCASEEERKALD-ADLIVGAKQKNELVNLIQQALK 120

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
               +D  + V    +  ++    +  +    AFL +Q+GC++FC++C +P+ RG E S 
Sbjct: 121 DHEKIDVVHEVTQFKDFEAMPVHCF--ESMHRAFLKVQDGCNQFCSYCAIPFARGRERSL 178

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           +  QV+  A+ L D G  EI L G +     G+  DGE      +   L      V  R 
Sbjct: 179 NHEQVIQIAKDLCDKGHTEIVLTGIHT----GRYFDGEYDLAKLMKALLENTPDYVYYRI 234

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
           ++    ++SD LI    +   +  +LH+PVQS  +  LK MNR +T  ++++ I+ IRS 
Sbjct: 235 SSIEITEVSDELIGLMQENSRMCHHLHIPVQSACNETLKRMNRPYTIEQFKEKIEYIRSC 294

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            PDI+IS+D I GF  E+D++F  T   + ++  +    F YS R GT  S +  +++  
Sbjct: 295 IPDISISTDVIAGFVQESDEEFETTYKNLAELELSFFHVFPYSKRNGTKASTLKGEINGK 354

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445
           +   R+  L +   E +           ++VLIE+   + G   G +       + S   
Sbjct: 355 IAKARVARLLELSNECRKRDMQRF--NPVQVLIERQ--QDGYYTGYTNQYHPCKILSDTS 410

Query: 446 NIGDI 450
             G I
Sbjct: 411 ISGRI 415


>gi|308233969|ref|ZP_07664706.1| SSU ribosomal protein S12P methylthiotransferase [Atopobium vaginae
           DSM 15829]
 gi|328944022|ref|ZP_08241487.1| MiaB tRNA modifying enzyme-like protein [Atopobium vaginae DSM
           15829]
 gi|327491991|gb|EGF23765.1| MiaB tRNA modifying enzyme-like protein [Atopobium vaginae DSM
           15829]
          Length = 504

 Score =  310 bits (794), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 115/493 (23%), Positives = 205/493 (41%), Gaps = 49/493 (9%)

Query: 14  VSQIVDQCIVPQRFF-VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHI 72
           V++  +    P+      + GC  N  D+ RM  +    G+E       AD++++NTC  
Sbjct: 23  VAEPSNASKQPKASCLFVTLGCAKNQVDTDRMRALLLKSGFEESRDASSADVVIINTCSF 82

Query: 73  REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT 132
            E A  +       +   + S I +     +++ GCV    G  + +  P V+  V    
Sbjct: 83  LESATSESIEVTLDLAQKRTSGITKLP---IIMCGCVPSRYGAALDKELPEVSAFVKATD 139

Query: 133 YYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTF 192
              +  ++     G       +S E     L  ++       G +AF+ I EGCD++C F
Sbjct: 140 EDSIVGIVSDVL-GIEHPTFSFSQELSARALRTIE-------GTSAFVKISEGCDRYCAF 191

Query: 193 CVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG------------- 239
           C +P+ RG   SR   ++  E   L++ GV EI L+GQ+   W                 
Sbjct: 192 CAIPFIRGHYASRCPEEIFSEITMLMEGGVKEIILIGQDTGIWGEDFSSRGAASVLHKDS 251

Query: 240 ---------------LDGEKCTFSDLLYSLSEI--KGLVRLRYTTSHPRDMSDCLIKAHG 282
                             E    + LL  ++ I       +R     P  M++ LI    
Sbjct: 252 DLHDPSSASSFDKNSTQHESMNLAWLLREVARIVRPYKAWIRVLYLQPEGMTEDLIATIR 311

Query: 283 DLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGE 342
           D   ++PY+ +P+Q  ++R+LK M R  +A +  ++   +R   P + + +  +VGFP E
Sbjct: 312 DTPEVLPYIDIPIQHCNERLLKKMGRSGSASQLHKLFAHLRHEIPQMVLRTTGMVGFPTE 371

Query: 343 TDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQ 402
           TD++    +D   +  +     F YS  LGT  + M  Q+    K ER   L+    E  
Sbjct: 372 TDEEAAELVDFFKQEEFDYMSVFSYSQELGTTAAKMRGQISAETKIERTQTLRDTAEELG 431

Query: 403 VSFNDACVGQIIEVLIEKHGKE--KGKLVGR----SPWLQS-VVLNSKNHNIGDIIKVRI 455
            +     VG++++V+I+    +    + +G     +P     V +   + N GD+++V++
Sbjct: 432 FAATAKHVGEVVDVIIDSIDMDSPDKERIGHAWFQAPDCDGCVHILDTDANPGDVVRVKL 491

Query: 456 TDVKISTLYGELV 468
            +     L GELV
Sbjct: 492 KEAYCYELVGELV 504


>gi|15836008|ref|NP_300532.1| hypothetical protein CPj0477 [Chlamydophila pneumoniae J138]
 gi|16752565|ref|NP_444827.1| hypothetical protein CP0277 [Chlamydophila pneumoniae AR39]
 gi|33241829|ref|NP_876770.1| hypothetical protein CpB0496 [Chlamydophila pneumoniae TW-183]
 gi|14916790|sp|Q9Z874|Y477_CHLPN RecName: Full=Putative methylthiotransferase
           CPn_0477/CP_0277/CPj0477/CpB0496
 gi|7189201|gb|AAF38135.1| conserved hypothetical protein [Chlamydophila pneumoniae AR39]
 gi|8978847|dbj|BAA98683.1| hypothetical protein [Chlamydophila pneumoniae J138]
 gi|33236338|gb|AAP98427.1| hypothetical protein CpB0496 [Chlamydophila pneumoniae TW-183]
          Length = 421

 Score =  310 bits (794), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 117/445 (26%), Positives = 211/445 (47%), Gaps = 34/445 (7%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD-DADLIVLNTCHIREKAAEKVYSFL 84
            F +   GC++N Y+     D     GY+ V   +  ADL ++NTC +   A       +
Sbjct: 9   TFKLVCLGCRVNQYEVQAYRDQLTILGYQEVLDSEIPADLCIINTCAVTASAESSGRHAV 68

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            ++        ++     +VV GC+ +++ E          +V   +             
Sbjct: 69  RQL-------CRQNPTAHIVVTGCLGESDKEFFASLDRQCTLVSNKEKS----------- 110

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
              R+++  +S +  F    I    ++ +    AF+ +Q+GC+ FC++C++PY RG  +S
Sbjct: 111 ---RLIEKIFSYDTTFPEFKI----HSFEGKSRAFIKVQDGCNSFCSYCIIPYLRGRSVS 163

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R   +++ E   ++D G  E+ + G NV    G   DGE+ + + L+  + +I G+ R+R
Sbjct: 164 RPAEKILAEIAGVVDQGYREVVIAGINV----GDYCDGER-SLASLIEQVDQIPGIERIR 218

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
            ++  P D+++ L +A        P  HL +QSGS+ ILK MNR+++  ++   +++ R+
Sbjct: 219 ISSIDPDDITEDLHRAITSSRHTCPSSHLVLQSGSNSILKRMNRKYSRGDFLDCVEKFRA 278

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             P  A ++D IVGFPGE+D DF  T+ +++ +G+ +  SF +S R  T       Q+  
Sbjct: 279 SDPRYAFTTDVIVGFPGESDQDFEDTLRIIEDVGFIKVHSFPFSARRRTKAYTFDNQIPN 338

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN-SK 443
            V  ER   L +  +          +G+  EVL+EK         G SP+ + V      
Sbjct: 339 QVIYERKKYLAEVAKRVGQKEMMKRLGETTEVLVEKVT--GQVATGHSPYFEKVSFPVVG 396

Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468
              I  ++ VR+  V+   L GE+V
Sbjct: 397 TVAINTLVSVRLDRVEEEGLIGEIV 421


>gi|114571391|ref|YP_758071.1| MiaB-like tRNA modifying protein [Maricaulis maris MCS10]
 gi|114341853|gb|ABI67133.1| MiaB-like tRNA modifying enzyme [Maricaulis maris MCS10]
          Length = 444

 Score =  310 bits (794), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 130/443 (29%), Positives = 207/443 (46%), Gaps = 33/443 (7%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           + ++GC++N ++S  M      QG            I++NTC +  +A  +    + R R
Sbjct: 29  ILTFGCRLNAWESEVMRKHARDQGLTNT--------ILVNTCAVTNEAVRQARQNIRRAR 80

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG-- 146
                  ++  D  ++V GC AQ + + +  R P VN V+G     +          G  
Sbjct: 81  -------RDNPDAQIIVTGCAAQVDPD-MFGRMPEVNRVIGNDDKLKAETFKPADLLGGT 132

Query: 147 -KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            K  V+   SV +    L  V+G   R R   A++ +Q GCD  CTFC++PY RG   S 
Sbjct: 133 EKVRVNDIMSVTETAGHL--VEGMEGRAR---AYVQVQNGCDHRCTFCIIPYGRGNSRSV 187

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
              +VVD+ + L+D+G  E+ L G ++ +W G+ L G+      +   L  +  L RLR 
Sbjct: 188 GAGEVVDQIKTLVDSGHSEVVLTGVDLTSW-GEDLPGKPPLGRLVQSILKHVPDLPRLRL 246

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
           ++    ++ + L +A      + PYLHL +Q+G D ILK M RRH   +   + +R++S 
Sbjct: 247 SSIDAIEIDEALFEAVTGETRIAPYLHLSLQAGDDMILKRMKRRHLRDDAIALCERLKSA 306

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
           RP+IA  +D I GFP ETD  F  ++ LVD+   A    F YSPR GTP + M  Q++  
Sbjct: 307 RPEIAFGADMIAGFPTETDAMFENSIRLVDECRLAYLHVFPYSPRPGTPAARMP-QLERA 365

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN- 444
           V  +R   L+ K  E      D  +G     L+EK G        R+     + +     
Sbjct: 366 VIKDRANRLRAKADEALSRHLDGMIGLERAALVEKPG------FARAGNFAGIRIEEAEF 419

Query: 445 HNIGDIIKVRITDVKISTLYGEL 467
              G ++ + I+      L G +
Sbjct: 420 PRAGALVDIAISGHDGRELQGVI 442


>gi|254441053|ref|ZP_05054546.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Octadecabacter
           antarcticus 307]
 gi|198251131|gb|EDY75446.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Octadecabacter
           antarcticus 307]
          Length = 459

 Score =  310 bits (794), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 123/479 (25%), Positives = 207/479 (43%), Gaps = 39/479 (8%)

Query: 6   KLIGVAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLI 65
           ++   A  ++    + +      + S GC   + DS R+     ++GY        AD +
Sbjct: 5   RVPRDAPKIATPDARRVNQPTIGMVSLGCPKALVDSERILTRLRAEGYAISPDYAGADAV 64

Query: 66  VLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVN 125
           V+NTC   + A  +    +G                 V+V GC+  AE + I    P + 
Sbjct: 65  VVNTCGFLDSAKAESLDAIGEALTENGK---------VIVTGCLG-AEPDYIREHHPRIL 114

Query: 126 VVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEG 185
            V GP  Y ++ + +  A           S +   + L       +      ++L I EG
Sbjct: 115 AVTGPHQYEQVLDAVHAA--------VPPSPDPFIDLLPATQ--VSLTPRHYSYLKISEG 164

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD---- 241
           C+  C FC++P  RG   SR    V+ EA KLIDNGV E+ ++ Q+ +A  G        
Sbjct: 165 CNHKCKFCIIPDMRGRLQSRPAHAVMREAEKLIDNGVKELLVISQDTSA-YGVDTKHARD 223

Query: 242 -GEKCTFSDLLYSLSEIKG----LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQ 296
            G +   +DL   L  + G     VRL Y   +P      LI    D  +++PYL +P Q
Sbjct: 224 RGHRAHITDLARDLGSLGGENKPWVRLHYVYPYPHV--RQLIPLMAD-GLILPYLDIPFQ 280

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
             S  +L+ M R   A +    I   R + PDI + S FIVG+PGET+ +F+  +D +D+
Sbjct: 281 HASTDVLRRMARPAAAAKTLDEITAWREICPDITLRSTFIVGYPGETEAEFQVLLDWMDE 340

Query: 357 IGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEV 416
               +   FKY    G   + + + V   VK +R     +K +    +   A VGQ+I+V
Sbjct: 341 AQLDRVGCFKYENVAGARSNALPDHVAAEVKQDRWDRFMEKAQAISEAKLTAKVGQVIDV 400

Query: 417 LIEKHGKEK---GKLVGRSPWLQSVVLNS---KNHNIGDIIKVRITDVKISTLYGELVV 469
           +I+    +     +    +P +   +      +  ++G+I+KV + +     L+G +V 
Sbjct: 401 IIDDIDADGVATCRTKADAPEIDGNLFIDEGTEGLSVGEIVKVEVDEAGEYDLWGLIVT 459


>gi|291280234|ref|YP_003497069.1| hypothetical protein DEFDS_1859 [Deferribacter desulfuricans SSM1]
 gi|290754936|dbj|BAI81313.1| conserved hypothetical protein [Deferribacter desulfuricans SSM1]
          Length = 411

 Score =  310 bits (794), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 121/446 (27%), Positives = 224/446 (50%), Gaps = 41/446 (9%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + ++ ++GC++N+ +S  ++     +G+  V+++++AD++V+N+C + E A +K   F+ 
Sbjct: 3   KIYIHTFGCKVNLSESENIKLEGSQKGFLFVDNIEEADVVVINSCAVTELAEKKCNDFIK 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           +I+   N        + V+V GC A    +EI      ++ V+  +    L E L     
Sbjct: 63  KIKKRYN--------IKVLVTGCYALILSKEIKS---YIDFVLDNEKKESLVEFLSNTFQ 111

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                            L+        K    AFL IQ+GCD FCT+C++P+ RG   S+
Sbjct: 112 -----------------LNDYKQTSKPKLKTRAFLKIQDGCDAFCTYCIIPFLRGKPKSK 154

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI--KGLVRL 263
            + +V+ E   L++    EI L+G ++    G   +    T  +LL  + +      +R 
Sbjct: 155 PIEKVIKEIDDLVNLNYKEIVLVGIHIG-KYGIDHN---TTLKNLLKEIIKQYQNKNIRF 210

Query: 264 RYTTSHPRDMSDCLIKAHGDLD-VLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           R ++    ++ D LI      + ++  + H+ +Q+GS++IL+ M RRHTA ++  I ++I
Sbjct: 211 RLSSLDVDEIDDELIDIVEHSNGLICNHFHIALQNGSNKILQLMKRRHTAEDFIDICNKI 270

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           +S   D  I +D IVGFP ETD+DF +T+++++K        F YS R GT  S M  Q+
Sbjct: 271 KSKIADCTIGTDVIVGFPEETDEDFESTINVLNKANVDYLHVFSYSKREGTLASKMKNQI 330

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
            EN+K ER   L+K  ++ +++     +G+  ++L+EK+G       G       V + +
Sbjct: 331 PENIKKERAKMLRKIGKKLKLNSELKMIGKTAKILLEKNGG------GHISNYHYVKIVN 384

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
            N  + +   ++I   + + L G LV
Sbjct: 385 DNLEVNNFYNIKILKREKNRLIGGLV 410


>gi|118580731|ref|YP_901981.1| MiaB-like tRNA modifying protein [Pelobacter propionicus DSM 2379]
 gi|118503441|gb|ABK99923.1| MiaB-like tRNA modifying enzyme [Pelobacter propionicus DSM 2379]
          Length = 427

 Score =  310 bits (794), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 113/424 (26%), Positives = 192/424 (45%), Gaps = 18/424 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +   + + GC+ N ++S  M + F   GY  V   + AD+ V+N+C +  +   +    +
Sbjct: 2   KSVAIATLGCKTNQFESAAMLEQFTRSGYRVVPFSEPADIYVINSCTVTARTDAETRRLI 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
                      +      +V  GC AQ   +E+  R P V+VV+G +       L + + 
Sbjct: 62  -------RRARRLNPAARIVATGCYAQVSPQEL-SRMPEVDVVLGNREKLDSTLLTDASE 113

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
               V D   +       L+      +      AFL +Q GCD FC++C+VPY RG   S
Sbjct: 114 --DMVKDAGQATGGALLHLT------SFAEHTRAFLQVQNGCDSFCSYCIVPYARGRSRS 165

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
            S ++V++  R+L+D+G  E+ L G ++ A+      GE  + + L+  + E   L RLR
Sbjct: 166 VSPAEVLEGVRRLVDSGFREVVLTGIHLGAYGLDLSPGE--SLACLVERILEETSLERLR 223

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
             +  P +  D LI        +  + H+P+QSG D +L  M R + A   R +++R+ +
Sbjct: 224 IGSLEPNEFDDRLISLFSRSPRVCHHFHIPLQSGCDSVLTLMGRPYDAAYLRSLLERVIA 283

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             PD  + SD I GFPGE+D +F+ T  LV+++  A    F YS R GT  +++   +  
Sbjct: 284 AMPDSFLGSDIIAGFPGESDREFQTTCTLVEQLPLADLHVFPYSLRPGTRAASLPGHLPP 343

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
            V  +R   L+     ++  F    VG  I VL ++       + G S            
Sbjct: 344 AVIRDRAARLRNIAASKKELFLQRAVGGDILVLGQQFDPVSRTVRGLSRNYIQAQFPGTA 403

Query: 445 HNIG 448
            ++ 
Sbjct: 404 ADVN 407


>gi|195488757|ref|XP_002092449.1| GE14196 [Drosophila yakuba]
 gi|194178550|gb|EDW92161.1| GE14196 [Drosophila yakuba]
          Length = 552

 Score =  310 bits (794), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 125/462 (27%), Positives = 214/462 (46%), Gaps = 27/462 (5%)

Query: 14  VSQIVDQCIVP--QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCH 71
               +   ++P  Q+ FVK++GC  N  DS  M     + GY+     ++ADL +LN+C 
Sbjct: 58  PKPTIHASVIPGTQKVFVKTWGCAHNNSDSEYMAGQLAAYGYKLSGK-EEADLWLLNSCT 116

Query: 72  IREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ 131
           ++  + +   + +        S ++ G    VVVAGCV Q   +           V+G Q
Sbjct: 117 VKNPSEDTFRNEI-------ESGMRNGKH--VVVAGCVPQGAPKSDYLNG---LSVIGVQ 164

Query: 132 TYYRLPELLERARFGKRV--VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKF 189
              R+ E++E    G  V  +     V  +    + +     RK  +   ++I  GC   
Sbjct: 165 QIDRVVEVVEETLKGNSVQLLQNKKKVHGRRVAGAPLSLPKVRKNRLIEIISINSGCLNQ 224

Query: 190 CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSD 249
           CT+C   + RG   S    +VV+ AR+    G CEI L  ++  A  G+ +     +  +
Sbjct: 225 CTYCKTKHARGDLASYPPEEVVERARQSFAEGCCEIWLTSEDTGA-YGRDI---GSSLPE 280

Query: 250 LLYSLSE-IKGLVRLRYTTSHPRDMSDCLIKAHG--DLDVLMPYLHLPVQSGSDRILKSM 306
           LL+ L E I     LR   ++P  + + L +         +  +LH+PVQSGSD +L  M
Sbjct: 281 LLWQLVEVIPEHCMLRVGMTNPPYILEHLEEVAKVLQHPRVYAFLHVPVQSGSDSVLGEM 340

Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
            R +   ++  ++D +R   P + I++D I GFP ET++DF  TM L  K  +   F  +
Sbjct: 341 KREYCRQDFEHVVDFLRERVPGVTIATDIICGFPTETEEDFEETMTLCAKYRFPSLFINQ 400

Query: 367 YSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG 426
           + PR GTP + M E++  N+  +R   L               VG++  VL+ +   +K 
Sbjct: 401 FFPRPGTPAAKM-ERIPANLVKKRTKRLTDLFY--SYEPYAERVGEVYTVLVTEVSHDKL 457

Query: 427 KLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
             VG +   + V+L  +++ +G  + VRIT     ++ GE++
Sbjct: 458 HYVGHNKSYEQVLLPMRDNLLGTRVHVRITSASKFSMVGEIL 499


>gi|239616755|ref|YP_002940077.1| MiaB-like tRNA modifying enzyme [Kosmotoga olearia TBF 19.5.1]
 gi|239505586|gb|ACR79073.1| MiaB-like tRNA modifying enzyme [Kosmotoga olearia TBF 19.5.1]
          Length = 425

 Score =  309 bits (793), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 121/439 (27%), Positives = 211/439 (48%), Gaps = 32/439 (7%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + +     ++GC++N Y++  M ++  +  +      + AD+ V+N+C +  +A  K+  
Sbjct: 1   MKEIVSFFTFGCKLNQYETEGMAELLQND-FRVTFDSEIADIFVINSCTVTAEAERKLRQ 59

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
              R++               V+ GC ++    E+       ++++G +   ++ E L+ 
Sbjct: 60  LYRRLKAK-------NPGSKFVIVGCYSELSAGELKDL--GFDLILGIKDKLKIKEFLKE 110

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG-I 201
                 + D             +  G Y R R   A++ IQ+GC   C++C +   RG  
Sbjct: 111 NTENTCIKD----------YFQVTKGPYGRTR---AYIGIQDGCLNNCSYCRIRLARGNK 157

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
            IS+    V +E + L+++G  EI L G N+  + G    GE  +   LL  L +I+G  
Sbjct: 158 IISKPPEVVAEELKTLVEHGFQEIVLTGINIG-FYGF---GEGYSLISLLKQLVKIEGEW 213

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           RLR ++  PR +S+ LI    D   +  ++HL +QSGSD++LKSMNR +T  +  QI+  
Sbjct: 214 RLRLSSLDPRLVSNELITFMTDNPKIAQHVHLSLQSGSDKVLKSMNRNYTTNDVEQIVAL 273

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
            RS     + ++D IVGFPGETD DF  T++ V +I + +   F++SPR GT  + M  Q
Sbjct: 274 FRSRNNRFSFTTDVIVGFPGETDTDFVETLEFVKRIRFLKVHIFRFSPRPGTKAARMSNQ 333

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           +  N+K ER   L+K   E    + +  VG+   VLIEK+  +     G   +     + 
Sbjct: 334 ISGNIKKERATVLKKVALEASKDYLNEHVGKESTVLIEKN--DGIFSYGYDEFYIPHRVT 391

Query: 442 SKNHNIGDIIKVRITDVKI 460
                    +KV+I  ++ 
Sbjct: 392 GSIE--NGFVKVQIGGIEE 408


>gi|126733291|ref|ZP_01749038.1| hypothetical protein RCCS2_04029 [Roseobacter sp. CCS2]
 gi|126716157|gb|EBA13021.1| hypothetical protein RCCS2_04029 [Roseobacter sp. CCS2]
          Length = 506

 Score =  309 bits (793), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 109/460 (23%), Positives = 185/460 (40%), Gaps = 46/460 (10%)

Query: 10  VAHMVSQIVDQCIVPQ----------RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSM 59
             +  S   D+   P+             + S GC   + DS R+     ++GY      
Sbjct: 41  TQNPPSLRPDRAPAPKITDASRDGQPTIGMVSLGCPKALVDSERILTRLRAEGYAISPDY 100

Query: 60  DDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILR 119
             A+ +++NTC   + A  +    +G                 V+V GC+  AE + I  
Sbjct: 101 AGAEAVIVNTCGFLDSAKAESLDAIGEALQENGK---------VIVTGCLG-AEPDYIRD 150

Query: 120 RSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAF 179
             P +  V GP  Y ++ + +                 D F  L    G     R   ++
Sbjct: 151 HHPQILAVTGPHQYEQVLDAVHA---------NVPPAPDPFIDLLPASGVSLTPRHY-SY 200

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
           L I EGC+  C FC++P  RG   SR    V+ EA KL+D GV E+ ++ Q+ +A  G  
Sbjct: 201 LKISEGCNHKCKFCIIPDMRGRLASRPAHAVLREAEKLVDAGVKELLVISQDTSA-YGLD 259

Query: 240 LDGE---------KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV-LMP 289
              +         +   +DL   L ++   VRL Y   +P      LI    D    ++P
Sbjct: 260 RKYDLSPWKDGQVRSHITDLTRELGQLGAWVRLHYVYPYPYV--RDLIPIMADPANGVLP 317

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           YL +P Q     +L+ M R     +    I   R+  PDI + S FIVG+PGET+ +F+ 
Sbjct: 318 YLDIPFQHSHPDVLRRMARPAAGAKTLDEIAAWRAQCPDITLRSTFIVGYPGETEAEFQH 377

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDAC 409
            +D +D+    +   F+Y    G   + +   V   VK  R      K +    +  +A 
Sbjct: 378 LLDWLDEAQLDRVGCFQYENVAGARSNALPNHVAAEVKQNRWDRFMAKAQAISEAKLEAK 437

Query: 410 VGQIIEVLIEKHGKEK---GKLVGRSPWLQSVVLNSKNHN 446
           VG+ +EV+++   +++    +    +P +   +   +   
Sbjct: 438 VGRTLEVIVDDIDQDRIATCRTWADAPEIDGNLFIDEGAE 477


>gi|126727809|ref|ZP_01743639.1| MiaB-like tRNA modifying enzyme [Rhodobacterales bacterium
           HTCC2150]
 gi|126702936|gb|EBA02039.1| MiaB-like tRNA modifying enzyme [Rhodobacterales bacterium
           HTCC2150]
          Length = 422

 Score =  309 bits (793), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 121/433 (27%), Positives = 201/433 (46%), Gaps = 41/433 (9%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
             + GC++N Y++  M+++  + G E        + +V+NTC +  +A  K    + ++R
Sbjct: 6   FSTLGCRLNSYETEAMKELSAAAGLE--------NAVVVNTCAVTSEAVRKARQEIRKLR 57

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYY---------RLPEL 139
                  ++  D  ++V GC AQ E E        V+ V+G              + P+ 
Sbjct: 58  -------RDNPDAKLIVTGCAAQTEPETFAS-MDEVDQVIGNTEKMLGDTWTKISKGPDF 109

Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           +      K  VD   SV +    L  +DG   R R   A++ +Q GCD  CTFC++P+ R
Sbjct: 110 IGDVE--KVQVDDIMSVTETAGHL--IDGFGTRSR---AYVQVQNGCDHRCTFCIIPFGR 162

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G   S +   VV++ ++L+  G  EI L G ++ +W G  L GE      ++  L  +  
Sbjct: 163 GNSRSVAAGVVVEQIKRLVGKGFNEIVLTGVDLTSW-GADLPGEPKLGDLVMRILKLVPD 221

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           L RLR ++    ++ + L++A      LMP+LHL +Q+G D ILK M RRH   +  +  
Sbjct: 222 LPRLRISSIDSIEVDENLLQAIATEKRLMPHLHLSLQAGDDMILKRMKRRHLRDDAIEFC 281

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
           +  + +RPD+   +D I GFP ET+  F  ++ +V          F YS R GTP + M 
Sbjct: 282 ETAKKLRPDMTFGADIIAGFPTETEAMFENSLAMVADCDLTWLHVFPYSVRQGTPAARMP 341

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV 439
            QV+  +  ER   L+     +        VG++ +VL+E         +GR+     V 
Sbjct: 342 -QVNGALIKERAARLRAAGDIKVAEHLGHQVGKVHQVLME------NARMGRTEQFAEVF 394

Query: 440 LNSKNHNIGDIIK 452
             S +   G I+ 
Sbjct: 395 F-SDDQTEGAIVP 406


>gi|300087524|ref|YP_003758046.1| MiaB-like tRNA modifying enzyme [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
 gi|299527257|gb|ADJ25725.1| MiaB-like tRNA modifying enzyme [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
          Length = 400

 Score =  309 bits (793), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 118/428 (27%), Positives = 192/428 (44%), Gaps = 33/428 (7%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R ++ + GC++N  +S  +     + GY   ++  DAD++V+NTC +   A  K    + 
Sbjct: 3   RVYLATQGCKLNQAESESLRRGLEAVGYLLTDTAKDADIMVVNTCTVTNLADRKARQSIR 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
               +K         + V+V GC A+    E +   P V  VV       +PE+L    F
Sbjct: 63  SAGRVK-------PGIKVIVTGCYAER-QAESVGALPEVAKVVAMSEKDIIPEILHELGF 114

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
               V T  +                      +F+ IQ+GCD  C +C+VP  R  + + 
Sbjct: 115 PPATVGTAIA-----------------TGRTRSFIKIQDGCDYRCAYCIVPTVRPRKSAV 157

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            + +V+DE R     G  E+ L G  +  +R           + L+ ++ +   + RLR 
Sbjct: 158 PVEKVIDEIRARRREGCREVVLTGTEIGEYR-----TGNTALAGLIDAVLKETDIERLRI 212

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
           ++  PR+++  L  A      +  + HL +QSGSD +L+ M RR+   EY + +  IR V
Sbjct: 213 SSLQPREITPEL-MACWRNPRMCRHFHLSLQSGSDPVLRRMRRRYNTAEYAEALVAIRQV 271

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P+ A++SD I GFPGETD +F  ++  ++K G+A+   F +S R GTP + M  QVD  
Sbjct: 272 VPEAAVTSDIIAGFPGETDSEFADSLKFIEKCGFARLHVFPFSARPGTPAAGMEGQVDRR 331

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445
              +R   L     E +  F  +  G+  +VL E  GK  G+  G +     V       
Sbjct: 332 TVRQRTDRLLALAVECEAEFRRSMSGRSFDVLFE--GKRNGQWEGYTDNYLRVSRRDSAD 389

Query: 446 NIGDIIKV 453
               II  
Sbjct: 390 LTNRIIPA 397


>gi|268535520|ref|XP_002632893.1| Hypothetical protein CBG15101 [Caenorhabditis briggsae]
          Length = 437

 Score =  309 bits (793), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 117/443 (26%), Positives = 213/443 (48%), Gaps = 21/443 (4%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           V Q+ +V+++GC  N  DS  M  +    GY+ +   ++AD+ VLN+C ++  + ++  +
Sbjct: 7   VGQKVWVRTWGCSHNTSDSEYMAGLLHKAGYDVLKEGENADVWVLNSCTVKTPSEQQANN 66

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            + + +              +++AGCV+QA   E   +   V++V G +   R+ E++E 
Sbjct: 67  LVVQGQEQGKK---------IIMAGCVSQAAPSEPWLQ--NVSIV-GVKQIDRIVEVVEE 114

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
              G +V     +  D    L        RK  +   L+I  GC   CT+C     RG  
Sbjct: 115 TLKGNKVRLLTRNRPDALLSLP-----KMRKNELIEVLSISTGCLNNCTYCKTKMARGDL 169

Query: 203 ISRSLSQVVDEAR-KLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           +S  L  +V++AR    D GV E+ L  +++ AW G+ ++       + L  +     ++
Sbjct: 170 VSYPLEDLVEQARAAFHDEGVKELWLTSEDLGAW-GRDINLVLPDLLNALVKVIPDGCMM 228

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           RL  T           I    +   +  +LH+PVQS SD +L  M R ++   + QI D 
Sbjct: 229 RLGMTNPPYILDHLEEIAEILNNPKVYAFLHIPVQSASDAVLTDMKREYSRRHFEQIADY 288

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +    P+I I++D I+ FP ET +DF  +M+LV K  +   F  +Y PR GTP + + ++
Sbjct: 289 MIENVPNIYIATDMILAFPTETLEDFEESMELVRKYKFPSLFINQYYPRSGTPAARL-KK 347

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           +D     +R   + +  R     F +  +G+I  VL+ +   +K   VG +   + +++ 
Sbjct: 348 IDTVEARKRTAAMSELFRS-YTRFTEDRIGEIHNVLVTEIAADKIHGVGHNKSYEQILVP 406

Query: 442 SKNHNIGDIIKVRITDVKISTLY 464
            ++  +G+ I+VRIT V   ++ 
Sbjct: 407 LEHCKMGEWIEVRITSVTKFSMI 429


>gi|296274392|ref|YP_003657023.1| MiaB-like tRNA modifying protein YliG [Arcobacter nitrofigilis DSM
           7299]
 gi|296098566|gb|ADG94516.1| MiaB-like tRNA modifying enzyme YliG [Arcobacter nitrofigilis DSM
           7299]
          Length = 446

 Score =  309 bits (792), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 103/456 (22%), Positives = 210/456 (46%), Gaps = 31/456 (6%)

Query: 24  PQR-FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           P++   + S GC  N+ DS  M        Y   N+ + +D+I++NTC   + A E+  +
Sbjct: 8   PKKSLHLVSLGCTKNLVDSEIMLGKLKD--YAISNNAETSDVIIVNTCGFIDSAKEESIN 65

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +  +   +        D ++V+AGC+++   EE+ +  P +++  G   Y ++  L+  
Sbjct: 66  TILNLHEQRKK------DSVLVMAGCLSERYKEELQKELPEIDIFTGVGDYDKIDTLVNE 119

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            R G    +  + + +  +R+              A++ + EGC++ C+FC +P  +G  
Sbjct: 120 KRSG--FTNEVFLLNETNDRV-------ITGSNYHAYIKLSEGCNQVCSFCAIPSFKGKL 170

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR+L  +V E + L+  G  + + + Q+ +++       +      L+  + +I+G+  
Sbjct: 171 HSRTLESLVKEVKNLVAQGFYDFSFVSQDSSSFLRDLNINDG--LERLVNEVEKIEGIKS 228

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
            R    +P   +  LIK      V   Y  +P+Q  S ++LK M R     + ++++  +
Sbjct: 229 ARILYLYPSTTTLSLIKKIEQSKVFENYFDMPLQHISSKVLKIMKRGKGVEKLKELMSAM 288

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+  P+  + + FI G PGET +DF      V++ G+ +A  F YS   GT    +  +V
Sbjct: 289 RNT-PNSFVRTTFIAGHPGETQEDFEELCSYVEEYGFDRANVFSYSDEDGTTAYELDGKV 347

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGR----SPWLQS 437
           D+    +R   L + ++ + +   +  +GQI++V I+   +E    L  R    +P +  
Sbjct: 348 DQETIDKRAEILGEIIQRKTLESLEKEIGQIVDVYIDGESEEHEYLLSARKTIWAPEIDG 407

Query: 438 VVL-----NSKNHNIGDIIKVRITDVKISTLYGELV 468
            +        K   +G   +V+I+++    L G  +
Sbjct: 408 EIYINDNETGKELTVGKSYQVKISELAGDKLLGTAI 443


>gi|15618388|ref|NP_224673.1| hypothetical protein CPn0477 [Chlamydophila pneumoniae CWL029]
 gi|4376761|gb|AAD18617.1| Hypothetical Protein CPn_0477 [Chlamydophila pneumoniae CWL029]
          Length = 421

 Score =  309 bits (792), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 117/445 (26%), Positives = 210/445 (47%), Gaps = 34/445 (7%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD-DADLIVLNTCHIREKAAEKVYSFL 84
            F +   GC++N Y+     D     GY+ V   +  ADL ++NTC +   A       +
Sbjct: 9   TFKLVCLGCRVNQYEVQAYRDQLTILGYQEVLDSEIPADLCIINTCAVTASAESSGRHAV 68

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            ++        ++     +VV GC+ +++ E          +V   +             
Sbjct: 69  RQL-------CRQNPTAHIVVTGCLGESDKEFFASLDRQCTLVSNKEKS----------- 110

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
              R+++  +S +  F    I    ++ +    AF+ +Q+GC+ FC++C++PY RG  +S
Sbjct: 111 ---RLIEKIFSYDTTFPEFKI----HSFEGKSRAFIKVQDGCNSFCSYCIIPYLRGRSVS 163

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R   +++ E   ++D G  E+ + G NV    G   DGE+ + + L+  +  I G+ R+R
Sbjct: 164 RPAEKILAEIAGVVDQGYREVVIAGINV----GDYCDGER-SLASLIEQVDRIPGIERIR 218

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
            ++  P D+++ L +A        P  HL +QSGS+ ILK MNR+++  ++   +++ R+
Sbjct: 219 ISSIDPDDITEDLHRAITSSRHTCPSSHLVLQSGSNSILKRMNRKYSRGDFLDCVEKFRA 278

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             P  A ++D IVGFPGE+D DF  T+ +++ +G+ +  SF +S R  T       Q+  
Sbjct: 279 SDPRYAFTTDVIVGFPGESDQDFEDTLRIIEDVGFIKVHSFPFSARRRTKAYTFDNQIPN 338

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN-SK 443
            V  ER   L +  +          +G+  EVL+EK         G SP+ + V      
Sbjct: 339 QVIYERKKYLAEVAKRVGQKEMMKRLGETTEVLVEKVT--GQVATGHSPYFEKVSFPVVG 396

Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468
              I  ++ VR+  V+   L GE+V
Sbjct: 397 TVAINTLVSVRLDRVEEEGLIGEIV 421


>gi|307720469|ref|YP_003891609.1| 30S ribosomal protein S12P methylthiotransferase [Sulfurimonas
           autotrophica DSM 16294]
 gi|306978562|gb|ADN08597.1| SSU ribosomal protein S12P methylthiotransferase [Sulfurimonas
           autotrophica DSM 16294]
          Length = 441

 Score =  309 bits (792), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 99/457 (21%), Positives = 203/457 (44%), Gaps = 35/457 (7%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           +  +  + S GC  N+ D+  M     +  +E  ++ ++AD+I++NTC   + A E+  +
Sbjct: 1   MSNKLHIVSLGCTKNLVDTEVMMGKLQN--FELTDNNEEADVIIVNTCGFIDAAKEESLN 58

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-- 140
            +  + + +        D ++V+AGC+++   +E++ + P V++  G   Y ++ ELL  
Sbjct: 59  TVLSLHDARKE------DSVLVMAGCLSERYQDELMEQIPEVDIFTGVGDYDKIDELLVA 112

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           +++RF   V   D +                      A++ + EGC++ C+FC +P  +G
Sbjct: 113 KKSRFSDEVFLIDGA------------ERVVTGSSYHAYIKLSEGCNQTCSFCAIPSFKG 160

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
              SR L  +  E   L+  G  + + + Q+ +++        K   S L+  +  I+G+
Sbjct: 161 KLHSRDLDSIAKEVEGLVAKGYWDFSFVSQDSSSYLRD--QNVKDGLSLLMQRIELIEGV 218

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
              R    +P   S  L++  G   +   Y  +P+Q  +D +L+ M R     +  ++++
Sbjct: 219 KSARILYLYPSTTSMKLLQNIGKSKIFHNYFDMPIQHINDDMLRIMKRGFGKEKTLELLN 278

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
            ++S+ P+  + + FIVG P ET + F    +  +   + +   F YS    T   +M +
Sbjct: 279 YMQSL-PNSFVRTSFIVGHPHETQEMFDEMCEFAENFSFDRINVFSYSDEETTSAYDMQD 337

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGR----SPWL 435
           ++ + VKAER   L     E         VG+  +++I+    E    L  R    +P +
Sbjct: 338 KISDEVKAERAQILGDIAAECTKKSLQKEVGKTRQIVIDGESDEHEYLLSARELIWAPEI 397

Query: 436 QSVVL-----NSKNHNIGDIIKVRITDVKISTLYGEL 467
              +        +    G I   +IT++  + L   +
Sbjct: 398 DGELYVNDRTVDEELEFGKIYPAKITELVGNVLTATV 434


>gi|309777726|ref|ZP_07672675.1| 2-methylthioadenine synthetase [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308914492|gb|EFP60283.1| 2-methylthioadenine synthetase [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 405

 Score =  309 bits (791), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 120/398 (30%), Positives = 185/398 (46%), Gaps = 26/398 (6%)

Query: 75  KAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYY 134
              E+    + ++   K           ++V GC+AQ   E++ +  P ++ V+  + Y 
Sbjct: 23  PQKEEAIQTIFQMAEYKK-----HRCRRLIVVGCLAQRYKEQLEQDIPEIDAVISIREYP 77

Query: 135 RLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCV 194
           +L E+L++   G      D    DK ER           +  TA+L I EGC   CT+C 
Sbjct: 78  QLHEILQQLLDGH-----DLISYDKCER-------KVSSKPWTAYLKIAEGCSNHCTYCA 125

Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL 254
           +P  RG  +S  + Q+V EA KL   GV E+ ++ Q+     G  L G +    DLL  L
Sbjct: 126 IPLIRGDNVSFPIEQLVKEATKLAQRGVKELVVIAQDTT-KYGVDLYGRRALL-DLLKEL 183

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
             I+    +R    +P ++   LI+    L  ++PY  +P+Q  S+R+L+ MNRR +  E
Sbjct: 184 HAIEDFHWIRILYMYPDEIDTELIEGMAQLPKVLPYFDIPMQHASNRMLQLMNRRGSKEE 243

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
              ++ +IR+      + + FIVGFP E D DF   M  V+ I + +  +F YSP   TP
Sbjct: 244 VLTLVQKIRATFAYPTLRTTFIVGFPTEQDADFEELMQFVEDIHWDRMGAFTYSPEEDTP 303

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS-- 432
              M   VDE VK  RL  L K+  E  +      VG++IEVL+E      G   GR   
Sbjct: 304 AYTMDGAVDEEVKEARLAHLMKRQEEISLENQKKMVGEVIEVLVEDQEGLSGIYRGRGIS 363

Query: 433 ---PWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYG 465
                +  +V+   +  I  G  +KVRIT+       G
Sbjct: 364 SAPDEVDGIVMFKSDRFIEFGSFVKVRITEALPHDFKG 401


>gi|78188689|ref|YP_379027.1| hypothetical protein Cag_0713 [Chlorobium chlorochromatii CaD3]
 gi|123770879|sp|Q3ASP1|RIMO_CHLCH RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|78170888|gb|ABB27984.1| SSU ribosomal protein S12P methylthiotransferase [Chlorobium
           chlorochromatii CaD3]
          Length = 438

 Score =  309 bits (791), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 124/449 (27%), Positives = 206/449 (45%), Gaps = 33/449 (7%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
            F+ S GC  N  DS R+     +     V  +D+AD I++NTC   E A ++    +  
Sbjct: 6   LFLLSLGCSKNTVDSERLLAQAAAAAIRSVERVDEADTILINTCAFIEDAKKESIEEMLA 65

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
             + K    +EG    V V GC+ +    E+    P V+   G +     P++L  A  G
Sbjct: 66  ALDKK----REGVVKQVFVMGCLPELYRRELQEELPEVDAFFGTREL---PQIL--ASLG 116

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
            R     Y  E   ERL +    Y       A+L I EGC++ C+FC +P  RG   S+ 
Sbjct: 117 AR-----YRSELFDERLLLTPSHY-------AYLKISEGCNRICSFCSIPKIRGRYQSQP 164

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
           L Q++ EA +L   GV E+ L+ Q++ +  G    G     ++LL  LS++  L  +R  
Sbjct: 165 LEQLLREATRLQQQGVQELNLIAQDI-SLFGYDTTGH-SQLNELLLRLSDMDFL-WIRLL 221

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
            ++P +    +I    D   +  YL +P+Q  +DRIL++M R  T  +  +++  +R   
Sbjct: 222 YAYPVNFPLEVIDTMRDRSNICNYLDIPLQHCNDRILRAMKRGVTKADTIRLLHEMRQRN 281

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           P+I + +  +VGFPGET  +F   +D V++  + +   F Y+     P + + + +    
Sbjct: 282 PNIRLRTTMLVGFPGETRAEFEELLDFVEEQRFDRLGCFPYNHEEHAPSAMLEDLLSIEE 341

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV------- 439
           K ER+  L +       S N    G+ IEV+++   +E      RS +    V       
Sbjct: 342 KEERVSELMELQEAVAESLNREFEGKEIEVVVDSFVEE--MAFCRSEYDAPEVDNECLLT 399

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
             ++N   G+  +  I D     LYGE+V
Sbjct: 400 FGAQNIQAGNFYRALINDSSAHELYGEIV 428


>gi|225848434|ref|YP_002728597.1| hypothetical protein SULAZ_0612 [Sulfurihydrogenibium azorense
           Az-Fu1]
 gi|225643287|gb|ACN98337.1| conserved hypothetical protein [Sulfurihydrogenibium azorense
           Az-Fu1]
          Length = 405

 Score =  309 bits (791), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 114/424 (26%), Positives = 201/424 (47%), Gaps = 35/424 (8%)

Query: 54  ERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAE 113
           E   S +DAD+I++NTC   + A E+  + +    +LK    K      V+V GC+ +  
Sbjct: 8   EFTQSSEDADVILINTCGFIDAAKEESINTILEAVSLKEKSHK-----KVIVTGCLVERY 62

Query: 114 GEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRK 173
            +E+ +  P V+  +  +    +P+ L              S++ K E   I+       
Sbjct: 63  KQELEKEIPEVDEFIDLKNQTTIPQKL--------------SIQVKPESKRIIS-----T 103

Query: 174 RGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVN 233
               A+L I EGCD  C+FC +P  RG   S+ + ++V+EA+ L D GV E+ ++ Q+  
Sbjct: 104 PKHLAYLKISEGCDHTCSFCAIPNIRGKHKSKPIEKLVEEAKYLADQGVKELNIVSQDT- 162

Query: 234 AWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHL 293
           ++ G  + G+   F +LL  L +++G+  +R    +P  +++   K   D   ++PY+ +
Sbjct: 163 SYYGTDIYGKPMLF-ELLRKLEKVEGIKWIRLYYLYPTTVNEDFFKFIKDSQKVLPYIEM 221

Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
           P+Q   D ILK M R +   +  QI++      PD+ I S  IVG+P E + DF + ++ 
Sbjct: 222 PIQHTQDHILKDMMRGYRKKKLYQILEWKEKYTPDMTIRSSVIVGYPTEKEKDFLSMLEF 281

Query: 354 VDKIGYAQAFSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQ 412
           + +  +     F YS   GTP      +++ +  K  R   + K   +     N   VG+
Sbjct: 282 LKEAKFDWLGVFTYSHEEGTPAYEKHKDKIPKKEKLRRFNEVIKLQEDITYEKNFQTVGK 341

Query: 413 IIEVLIEKHGKEKGKL-VGRS----PWLQSVVL--NSKNHNIGDIIKVRITD-VKISTLY 464
             EV+++   +E   L +GRS      +  ++    ++    GDIIKV+I +      L 
Sbjct: 342 EFEVIVDGFSEEWETLPIGRSYRSAYDIDGIIYIETTQPLKTGDIIKVKIKEVADKYDLV 401

Query: 465 GELV 468
           GE V
Sbjct: 402 GEEV 405


>gi|117924283|ref|YP_864900.1| MiaB-like tRNA modifying enzyme [Magnetococcus sp. MC-1]
 gi|117608039|gb|ABK43494.1| MiaB-like tRNA modifying enzyme [Magnetococcus sp. MC-1]
          Length = 467

 Score =  309 bits (791), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 121/476 (25%), Positives = 213/476 (44%), Gaps = 34/476 (7%)

Query: 17  IVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA 76
           + D     +R  + + GC++N ++   M+      GY    + + A+++++NTC +  ++
Sbjct: 1   MDDHDTTKKRIAIINMGCRVNQFEGAAMQAEAAQMGYVSATADETAEVVIVNTCSVTAQS 60

Query: 77  AEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL 136
             +    + RI        +E     ++V GC AQ    ++L   P V +V+G Q    +
Sbjct: 61  DSQARKQIRRIA-------RENPHAQILVTGCYAQRNP-QLLAELPGVALVLGNQEKRGI 112

Query: 137 PELL-------------ERARFGKRVVDTDYSVEDKFERLSIVDGGYN-------RKRGV 176
            + L             ++     R       +E   E   +              K   
Sbjct: 113 AKELAILEAKPLAQPATQQVAPMPRTPLRQSGLEPLAEEAPLPRWEEGPLVAADAFKGQA 172

Query: 177 TAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR 236
            AF+ +Q GCDK CTFCV+P  RG   S+S   V+ +A+  +  G  E+ L G ++ +  
Sbjct: 173 RAFVQVQNGCDKRCTFCVIPALRGPSRSQSPQWVMAQAQSFLQAGYQELVLTGIDLGS-Y 231

Query: 237 GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQ 296
           G+   G+  + + L+  L  + GL RLR ++  P DM   LI   G    L P+LHL +Q
Sbjct: 232 GREQTGQGWSLARLVEQLLSLDGLARLRLSSIDPMDMEPALIALMGRAPKLCPHLHLSMQ 291

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
           SG D++LK M+R  T     + + ++R+VRP++ + +D IVGFP E++  F  + D+V +
Sbjct: 292 SGDDQVLKRMHRGSTRQALLERVAQLRAVRPELVLGADLIVGFPTESEAAFEQSCDMVRR 351

Query: 357 IGYAQAFSFKYSPRLGTPGSNMLE--QVDENVKAERLLCLQKKLREQQVSFNDACVGQII 414
           +  +    F+YS R  TP + +     V++     R   L               VG   
Sbjct: 352 LEISLLHIFRYSARPDTPAAAIPRRFHVEDTRIKARAKQLAMVGGAVWQQVAQRRVGCHD 411

Query: 415 EVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRIT--DVKISTLYGELV 468
            VL+E+    +G+L+G++     VV+ +     G ++ V I   D     L    +
Sbjct: 412 RVLVEQ-SDAQGRLLGKNDSFFDVVVENTPATAGTLLPVEIVGWDADARHLLARAL 466


>gi|161528769|ref|YP_001582595.1| MiaB-like tRNA modifying enzyme [Nitrosopumilus maritimus SCM1]
 gi|160340070|gb|ABX13157.1| MiaB-like tRNA modifying enzyme [Nitrosopumilus maritimus SCM1]
          Length = 422

 Score =  309 bits (791), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 125/445 (28%), Positives = 217/445 (48%), Gaps = 30/445 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + FV+SYGC  +  DS  +  +  + G+  V    ++DL V+ TC +++  A K+   + 
Sbjct: 3   KIFVESYGCSASFADSEMISGLILNGGHTLVEDSSESDLNVVVTCSVKDATANKM---VH 59

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           RI++LK           +VVAGC+ +AE E + + S   ++ +GP +  +  ++++    
Sbjct: 60  RIKSLKTKP--------LVVAGCLPKAEKETVEKFSENASL-LGPNSLGKTLQVIDSTLK 110

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G++ +  + +       LS V     R       + I  GC   CTFC    ++G   S 
Sbjct: 111 GRKKIALEDT------DLSKVGLPKVRLNPAVGIVEIASGCMSECTFCQTKISKGDLQSY 164

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            L  +V + +  I+ G  E+ L   + N   G  +         L+ ++SEI     +R 
Sbjct: 165 RLGDIVRQVKTEINEGCKEVWLTSTD-NGCYGFDI---GTDLPSLINAVSEIPEEFMIRV 220

Query: 266 TTSHPRDMSDC---LIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
              +P  M      LI+++ D D +  +LH+PVQSGSD++L  M R HTA  +R+I+ + 
Sbjct: 221 GMMNPMYMPRIKEKLIESY-DNDKVFKFLHIPVQSGSDKVLHDMKRGHTAGTFREIVKKA 279

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R   PD  IS+D IVGFP ET +DF  T++L+D+         KYS R GT  +   EQ+
Sbjct: 280 RERFPDFTISTDIIVGFPSETKEDFEKTVELLDETRPDVVNLSKYSARPGTEAAEW-EQI 338

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
           D      R   + +++ +  +  N   +G   +VL ++   E   + GR+   + V +  
Sbjct: 339 DVAEVKSRSKRIFEQINKISLENNKKWIGWKGDVLFDEQTDEG--IKGRNFAYKPVFVP- 395

Query: 443 KNHNIGDIIKVRITDVKISTLYGEL 467
           +  +IG +  V I D   ++L G++
Sbjct: 396 EQVDIGQLHAVEIIDATQNSLLGKI 420


>gi|288940181|ref|YP_003442421.1| MiaB-like tRNA modifying enzyme [Allochromatium vinosum DSM 180]
 gi|288895553|gb|ADC61389.1| MiaB-like tRNA modifying enzyme [Allochromatium vinosum DSM 180]
          Length = 469

 Score =  309 bits (791), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 130/469 (27%), Positives = 215/469 (45%), Gaps = 44/469 (9%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSM-DDADLIVLNTCHIREKAAEKVYSFL 84
           R  +++ GC++N  +       F ++G+  V      A+LIV+NTC +  +A  K    L
Sbjct: 2   RVRLQTLGCRLNEAELESWARDFQARGFTIVEDETAPAELIVVNTCAVTGEAVRKSRQIL 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEE--------------ILRRSPIVN----- 125
            R +       +      ++V+GC+   +G                +   +P  +     
Sbjct: 62  RRAQ-------RRHPGARLIVSGCLVSLDGGATSAGTAQAFPLSSLLPTSTPPASSTVAS 114

Query: 126 --VVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQ 183
             ++V  +   RL EL+  A      +D+          + +    + R R   AF+ IQ
Sbjct: 115 DGLIVVNRDKDRLVELVLAALG----LDSGLPHPSATNAMDLAAPLFARGRQ-RAFVKIQ 169

Query: 184 EGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
           +GC   CTFCV    RG E SR L ++V E  +  D+G+ E+ L G ++    G  L   
Sbjct: 170 DGCRYQCTFCVTTQARGPERSRPLPEIVREVERFQDSGIREVVLTGVHLGG-YGADL--- 225

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
               + L+  L     + RLR  +  P D+ +       D   LMP+LHLP+QSGSDR+L
Sbjct: 226 GTDLTHLIERLLNETAIPRLRLGSLEPWDLPERFWSLFAD-RRLMPHLHLPLQSGSDRVL 284

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           + M RR    EY ++++  R+  PD+ +++D IVGFPGE DDD+R T +L + + +    
Sbjct: 285 RRMARRCKRDEYIRLVEGARAAIPDLNLTTDIIVGFPGEDDDDWRQTFELAESLRFGHIH 344

Query: 364 SFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HG 422
            F YSPR GTP +     VD   +  R+  L+      ++      +G+ + +L E+   
Sbjct: 345 VFGYSPRPGTPAAGFANPVDARTRRRRVGELESLAHRSRLQILRDQIGKTVMLLHERLPD 404

Query: 423 KEKGK-LVGRSPWLQSVVL-NSKNHNIGDIIKVRIT--DVKISTLYGEL 467
             +G+   G +P    V + ++     G +I+VRIT  D     L  E 
Sbjct: 405 AFEGRPRSGYTPNYLPVHVHSAAPIGEGSLIQVRITGLDAAAGLLIAEP 453


>gi|153842125|ref|ZP_01993473.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Vibrio parahaemolyticus
           AQ3810]
 gi|149745410|gb|EDM56661.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Vibrio parahaemolyticus
           AQ3810]
          Length = 305

 Score =  309 bits (791), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 128/267 (47%), Positives = 177/267 (66%), Gaps = 1/267 (0%)

Query: 177 TAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR 236
           TAF++I EGC K+CT+CVVPYTRG E+SR +  V+ E  +L + GV E+ LLGQNVNA+R
Sbjct: 2   TAFVSIMEGCSKYCTYCVVPYTRGEEVSRPMDDVLFEIAQLAEQGVREVNLLGQNVNAYR 61

Query: 237 GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQ 296
           G   DGE C+F++LL  ++ I G+ R+R+TTSHP + +D +I  + D   L+ +LHLPVQ
Sbjct: 62  GPMHDGEICSFAELLRLVASIDGIDRIRFTTSHPLEFTDDIIAVYEDTPELVSFLHLPVQ 121

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
           SGSDRIL  M R HTA EY+ II ++R  RPDI ISSDFIVGFPGETD DF+ TM L+  
Sbjct: 122 SGSDRILTMMKRPHTAIEYKSIIRKLRKARPDIQISSDFIVGFPGETDKDFQDTMKLIKD 181

Query: 357 IGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEV 416
           + +  +FSF +SPR GTP ++    + E VK ERL  LQ+ +  Q + ++   +     V
Sbjct: 182 VDFDMSFSFIFSPRPGTPAADYPCDIPEQVKKERLYELQQTINAQAMRYSRLMLATEQRV 241

Query: 417 LIEKHGKEK-GKLVGRSPWLQSVVLNS 442
           L+E   K+   +L  R+   + V  + 
Sbjct: 242 LVEGPSKKNLMELRARTENNRVVNFDG 268


>gi|32477342|ref|NP_870336.1| hypothetical protein RB12138 [Rhodopirellula baltica SH 1]
 gi|32447893|emb|CAD77411.1| conserved hypothetical protein [Rhodopirellula baltica SH 1]
          Length = 428

 Score =  309 bits (791), Expect = 9e-82,   Method: Composition-based stats.
 Identities = 113/457 (24%), Positives = 206/457 (45%), Gaps = 48/457 (10%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           +  +   ++ GC++N Y++  +     + GYE  +  + ADL ++NTC + E    K   
Sbjct: 1   MTAKLRTRTLGCKVNQYETELVRQGLQTIGYEDASDGESADLCIVNTCTVTETGDAKSRQ 60

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            + R+        +E  D  +VV GC A    EE+     +V V+   +           
Sbjct: 61  VVRRLN-------RENPDARIVVMGCYATRAPEEVSALPGVVEVLTDKRELGD------- 106

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
                        +  +F  + +  G         A++ +Q+GC   C++C++P  R   
Sbjct: 107 -------------LMGRFGVIDVPTGLSGFAGRKRAYVKVQDGCLLRCSYCIIPMVRPKL 153

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT-----FSDLLYSLSEI 257
            SR   ++VDE  +L+D G  E+ L G ++    G   +  K        + L+  L +I
Sbjct: 154 HSRPSQEIVDEVTRLVDAGHREVILTGIHLG-HYGVDWNRNKPREEWVRLAHLVKDLCQI 212

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLD-VLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
            G  R+R ++    +++  LI    +    ++P+LHL +QSGSD +L+ M RR     + 
Sbjct: 213 PGQFRIRMSSIEATEVTRELIGVMAEFPEKVVPHLHLCLQSGSDSVLRRMRRRWGTKMFL 272

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
                +R      AI++D I GFPGET+++F  T+    + G+++  +F YS R GTP +
Sbjct: 273 DRCRLLRESLDRPAITTDIIAGFPGETEEEFEQTLRTCREAGFSKIHAFPYSARRGTPAA 332

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS---- 432
              +Q+D+ + +ER+  L +   E +  +    VG  +E+L+E+   + G+L G +    
Sbjct: 333 ERDDQLDKGLISERVDRLGEVEAELRQQYYKTLVGSNLELLVEEVTPD-GRLQGTTCRYA 391

Query: 433 ------PWLQSVVLNSKNHNIGDIIKVRITDVKISTL 463
                 P   S    +      D+I  R+  V+   L
Sbjct: 392 LGSIERPENAS---EADALRENDLITARVVSVQDDRL 425


>gi|126734340|ref|ZP_01750087.1| MiaB-like tRNA modifying enzyme [Roseobacter sp. CCS2]
 gi|126717206|gb|EBA14070.1| MiaB-like tRNA modifying enzyme [Roseobacter sp. CCS2]
          Length = 423

 Score =  308 bits (790), Expect = 9e-82,   Method: Composition-based stats.
 Identities = 125/433 (28%), Positives = 205/433 (47%), Gaps = 41/433 (9%)

Query: 33  GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92
           GC++N Y++  M+++  + G   V++      IV+NTC +  +A  K    + ++R    
Sbjct: 16  GCRLNAYETEAMKELATAAG---VDNA-----IVVNTCAVTSQAVRKARQDIRKLR---- 63

Query: 93  SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL-------PELLERARF 145
              ++  D  ++V GC AQ E +        V+VV+G              P+L+ +   
Sbjct: 64  ---RDYPDAKLIVTGCAAQTEPDTFAN-MGEVDVVIGNTEKMDPATWAGMAPDLIGQTES 119

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            +  VD   SV +    L  +DG   R R   A++ +Q GCD  CTFC++PY RG   S 
Sbjct: 120 VQ--VDDIMSVTETAGHL--IDGFGTRSR---AYVQVQNGCDHRCTFCIIPYGRGNSRSV 172

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
               VVD+ ++L+D G  E+ L G ++ +W G  L         ++  L  +  L RLR 
Sbjct: 173 PAGVVVDQIKRLVDTGYNEVVLTGVDLTSW-GADLPATPKLGDLVMRILKLVPDLPRLRI 231

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
           ++    ++ + L++A      LMP+LHL +Q G D ILK M RRH   +        R++
Sbjct: 232 SSIDSIEVDENLMQAIATEPRLMPHLHLSLQHGDDMILKRMKRRHLRDDAIAFCQEARTL 291

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
           RPD+   +D I GFP ETDD F  ++ LV +        F YSPR GTP + M   V+  
Sbjct: 292 RPDMTYGADIIAGFPTETDDMFANSLALVKECDLTWLHVFPYSPRPGTPAAKMPP-VNGK 350

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK-N 444
           +  +R   L+     Q      A  G+   +L+E         +GR+     V+ ++   
Sbjct: 351 LIKQRAAALRAAGTAQVDRHLKAQAGKTHRILME------NARMGRTEQFTEVLFDTDQP 404

Query: 445 HNIGDIIKVRITD 457
            ++  I++ +IT 
Sbjct: 405 ESV--IVQAQITG 415


>gi|282857132|ref|ZP_06266378.1| conserved hypothetical protein [Pyramidobacter piscolens W5455]
 gi|282585067|gb|EFB90389.1| conserved hypothetical protein [Pyramidobacter piscolens W5455]
          Length = 436

 Score =  308 bits (790), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 123/455 (27%), Positives = 218/455 (47%), Gaps = 21/455 (4%)

Query: 14  VSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIR 73
           +     + +  +R  +++ GC+ N+ ++  +   F  +G   V+     D  V+ TC + 
Sbjct: 1   MPSPKSEPLRGRRVAIQALGCRTNLAEAEALASAFQRRGALIVDEP-PYDAAVIVTCSVT 59

Query: 74  EKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTY 133
             A  K    + R R       + G ++ V V GC AQ  GE+       V++++G +  
Sbjct: 60  AVADRKSRQLINRCR-------RAGENVCVAVCGCWAQGVGEKKAAAM-GVDLLIGNRFK 111

Query: 134 YRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC 193
             LP+ + R     R    +    D   R   ++   +   G  AF+ +Q+GCD  CT+C
Sbjct: 112 GELPDRVARWLE-DRARSFEAVRGDMGRRWDSLELDRSPYFG-RAFVKVQDGCDHRCTYC 169

Query: 194 VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS 253
           +VP  RG  +SR ++ ++ EAR+    G  E+ L G ++  +     +    +F+ L+ +
Sbjct: 170 IVPVLRGPSVSRPVADILAEARRCAAAGQFELILTGVHLGLFGRDSGE----SFAALVRA 225

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
           L  ++G+ RLR+ +  P  + D L++A         +LHLPVQSG D IL+ M R HTA 
Sbjct: 226 LDSVEGIQRLRFGSLEPFSIGDDLLEALAQSPRFCRHLHLPVQSGDDEILRRMGRGHTAA 285

Query: 314 EYRQIIDRIRSVRP-DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
           +Y ++++R+R+    D+ IS+D +  FPGE++  F  T+ L+      +   F YSPR G
Sbjct: 286 DYLKLVERLRAALGSDLHISTDVMCAFPGESETAFENTLALLKAARVGRVHGFHYSPRPG 345

Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS 432
           TP + M  Q+   +   R   L+K  RE   +     +G+ +EVL E     +G+  G +
Sbjct: 346 TPAAAMSGQIPTEIALARAERLKKAGRECLAAEARRWIGREVEVLFEGA--HRGRAQGYT 403

Query: 433 PWLQSVVLNSKNHNI-GDIIKVRITDVKISTLYGE 466
                     +  +I  ++ K+ +   K   L+G 
Sbjct: 404 RGYF--EFRPERESIYDELRKMTVVSSKNGVLWGR 436


>gi|218961820|ref|YP_001741595.1| putative MiaB-like tRNA modifying enzyme [Candidatus Cloacamonas
           acidaminovorans]
 gi|167730477|emb|CAO81389.1| putative MiaB-like tRNA modifying enzyme [Candidatus Cloacamonas
           acidaminovorans]
          Length = 422

 Score =  308 bits (789), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 120/430 (27%), Positives = 202/430 (46%), Gaps = 25/430 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R  + + GC+ N  +S  + D F    ++ V   ++AD+ ++NTC +  +   K    + 
Sbjct: 3   RIAIATLGCKANQAESSIILDQFND--FKLVPWQEEADIYIINTCTVTNRTDYKSRYLIR 60

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           +  + K           +VV GC AQ   EEI  +   V+ ++  Q    + ++L  A  
Sbjct: 61  QALSQKTQ----NPFAKIVVTGCFAQRYPEEIA-KMGNVDWIIDNQQKLNIADIL--AGG 113

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
               +D   + E  +         YNR R   AF  IQ+GCD  C +C VPY RG   S 
Sbjct: 114 NYEFMDIMQAKEFVY---KPTAKMYNRTR---AFQIIQDGCDFNCAYCAVPYGRGRSRSA 167

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           +L QV+ +A+  ++NG  EI L G N+  ++    D      +D+L  L+E++GL  +R 
Sbjct: 168 TLEQVIQQAKLFVENGYKEIVLSGINLGLYKDGNND-----LTDVLLRLNELQGLELIRL 222

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
           ++  P+  +D LI     +  L  + H+P+Q G+D  LK M R +T+    Q+I +I   
Sbjct: 223 SSVEPQLFNDKLINTLPLIPKLCSHYHIPLQCGADSGLKRMRRHYTSTTINQLIVKICER 282

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P  AI  D I GFPGET+++   T + +  +  A    F +S R GTP  +   Q+ + 
Sbjct: 283 IPYPAIGMDVITGFPGETEEEHNQTCEFLRSLPLAYLHIFTFSKRKGTPAFDFPNQISKT 342

Query: 386 VKAERLLCLQKKLREQQVSFNDA-CVGQI-IEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
           +K  R   L +  RE   ++  +     I +  ++EK+     + +  S     V  +  
Sbjct: 343 IKNRRANELSQISRELTSAYTKSLMENNIPLRGIVEKNTAGYCEFL--SDHYVRVRFSG- 399

Query: 444 NHNIGDIIKV 453
           N   GD ++V
Sbjct: 400 NFQPGDFVQV 409


>gi|134046253|ref|YP_001097738.1| MiaB-like tRNA modifying protein [Methanococcus maripaludis C5]
 gi|132663878|gb|ABO35524.1| MiaB-like tRNA modifying enzyme [Methanococcus maripaludis C5]
          Length = 425

 Score =  308 bits (789), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 119/447 (26%), Positives = 219/447 (48%), Gaps = 28/447 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + +++ YGC +N  D+  +++     + +E  +++DD+D+IV+NTC +R++   ++ S +
Sbjct: 2   KIYIEGYGCTLNTADTEIIKNSVNEFEDFELTDNVDDSDIIVINTCIVRQETEHRMISRI 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-ERA 143
              ++L            VVVAGC+A+A  ++I     + +V+V P+      ++L +  
Sbjct: 62  EYFKSLDKK---------VVVAGCMAKALPKKIKT---LADVLVMPREAQYSGKILKDNL 109

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             G    +   +    FE            +G+   L I EGC   CT+C+V   RG   
Sbjct: 110 LKGCSEKNGKSNENLNFEDQLNEKIKKVSSQGLITALPICEGCLGSCTYCIVKRARGNLA 169

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           S     +V +A +L+  G   + +  Q+  A  G   +    +  +L+  +SEI     +
Sbjct: 170 SYDRDLIVKKAEELVKTGTKCLLVTAQDT-ACYGLDNND---SLPNLINDISEIPEKFAM 225

Query: 264 RYTTSHPRDMSDCLIKAHG--DLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R    H +     L +         ++ +LHLP+QSG D++LK MNR +T  EY  +++ 
Sbjct: 226 RIGMMHAKFAEPILDELIESFKSKKVVKFLHLPIQSGDDQVLKDMNRNYTVDEYISVLNE 285

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
            +S   ++  ++D IVGFP ET++ F  T+++V KI      + KYS R  T  + +L+Q
Sbjct: 286 FKSKIKNLNFTTDVIVGFPTETEEAFENTLEIVKKIKPDFTHAAKYSQRKYTKAA-ILKQ 344

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           VD  ++ ER   L +  RE     N   +G+  E+L+ K        +G +   ++V+  
Sbjct: 345 VDTKIRKERSEILNELRRELSYENNTRHIGETFEILVTKSN------MGVTDNCKNVIFE 398

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
            +   IG+  +V++T  K   L G+L+
Sbjct: 399 -EPAKIGEFRRVKVTGAKTFGLSGKLL 424


>gi|294678991|ref|YP_003579606.1| MiaB family RNA modification enzyme [Rhodobacter capsulatus SB
           1003]
 gi|294477811|gb|ADE87199.1| RNA modification enzyme, MiaB family [Rhodobacter capsulatus SB
           1003]
          Length = 419

 Score =  308 bits (788), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 116/417 (27%), Positives = 181/417 (43%), Gaps = 26/417 (6%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
             + GC++N Y++  M+++    G            +V+NTC +  +A  K    + ++ 
Sbjct: 6   FSTLGCRLNAYETEAMKELAAQAGLSGA--------VVVNTCAVTAEAVRKAKQEIRKLA 57

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
                  +E     ++V GC AQ E E     +  V  VVG     +       A  G  
Sbjct: 58  -------RENPGAAIIVTGCAAQTEPETFAAMT-EVTRVVGNHEKMQPETWAALAPKGAD 109

Query: 149 VVDTDY--SVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
            +       V+D            +      A++ +Q GCD  CTFC++P+ RG   S  
Sbjct: 110 FIGETERVMVDDILSVKETAGHLIDGFGRHRAYVQVQNGCDHRCTFCIIPFGRGNSRSVP 169

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
              VV++ ++L+D G  E+ L G ++ +W G  L G       ++  L  +  L RLR +
Sbjct: 170 AGVVVEQIKRLVDRGFAEVVLTGVDLTSW-GADLPGAPRMGDLVMRILRLVPDLARLRIS 228

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
           +    +  D L+ A      LMP+LHL +Q G D ILK M RRH   +     +  R +R
Sbjct: 229 SIDSIEADDNLMLAIATEPRLMPHLHLSLQHGDDMILKRMKRRHLRDDAIAFCEEARRLR 288

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           P I   +D I GFP ET++ F  ++ LV+  G      F YS R GTP + M  +V   V
Sbjct: 289 PGIVFGADIIAGFPTETEEMFENSLRLVEDCGLTFLHVFPYSARKGTPAARMP-RVAGPV 347

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
             +R   L+       V    A VGQ+ EVL E         +GR+ +   V  +  
Sbjct: 348 IKDRAARLRAAGDAALVRHLQAEVGQLREVLTEGP------RLGRTEYFTEVSFDRD 398


>gi|257456035|ref|ZP_05621240.1| radical SAM domain protein [Treponema vincentii ATCC 35580]
 gi|257446558|gb|EEV21596.1| radical SAM domain protein [Treponema vincentii ATCC 35580]
          Length = 515

 Score =  308 bits (788), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 113/522 (21%), Positives = 207/522 (39%), Gaps = 83/522 (15%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + +RFF+  +GC  N  D   +  +   +G+++    + ADLI++N+C   E A  +   
Sbjct: 1   MTKRFFLDQHGCAKNQVDGELLIGILTDRGWQKTPEPEKADLIIVNSCGFIEPAKRESIE 60

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +   R              +++AGC+A+  G+         +   G     +LP L++R
Sbjct: 61  SVITARAA-------YPHAKILLAGCLAERYGDVFKTEFEEADAFFGNGDLSQLPVLIDR 113

Query: 143 ARFGKRVVDTDYSV---EDKFERLSIVDGGYNRKRGV-----------------TAFLTI 182
                   +   S    ++K++ +S         +                   +AF+ I
Sbjct: 114 LFPDASPAEQQSSATLRQEKYQPVSPTGHSRPFLKPAQKGVCCGQRPELLNFPRSAFIKI 173

Query: 183 QEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------- 235
            EGC+  C+FC +P  RG   SR  + +V E +  +  G  E  L+GQ++  +       
Sbjct: 174 TEGCNNCCSFCAIPLIRGSVRSRPAADIVSEIQSFVRQGYKEFNLIGQDLAVYEAAPPAD 233

Query: 236 -------------------RGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDC 276
                                     +    + LL+++S IKG   +R    HP      
Sbjct: 234 AIDRPLPLKTEAEAEANKAETNKRKPKLSGLAQLLHAISGIKGQFSVRLLYIHPDHFPLD 293

Query: 277 LIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP-------DI 329
           ++         +PY  +P QSGSD I+++MNR  +A  Y  +I+ IR+          + 
Sbjct: 294 ILPVMTADTRFLPYFDIPFQSGSDPIIRAMNRCGSAEAYLNLIENIRAAFRSAESPYGEA 353

Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAE 389
            I + F+ GFPGET  DF  T   +  +    + +F YS   GT  ++M +QV   +  +
Sbjct: 354 VIRTTFLTGFPGETQADFERTAAFLQAVQSLWSGAFAYSQEEGTKAADMKKQVPAKIAEQ 413

Query: 390 RLLCLQKKLREQQVSFNDACVGQIIEVLIEKH------GKEKGK---LVGR----SPWLQ 436
           R   L +   +       +  G    VLIE+        ++  +    +GR    +P + 
Sbjct: 414 RKAALNELQLKITEQKLASFCGLETNVLIEEIIPQDKSSEDSTQGCIALGRAWFQAPEVD 473

Query: 437 SVVL----------NSKNHNIGDIIKVRITDVKISTLYGELV 468
             V+            +    G +++VRIT ++   L  + +
Sbjct: 474 GAVVVNFSEAQKDSEGQPITAGSLVRVRITALRGIDLEADAI 515


>gi|119357557|ref|YP_912201.1| MiaB-like tRNA modifying enzyme YliG [Chlorobium phaeobacteroides
           DSM 266]
 gi|238065324|sp|A1BHA0|RIMO_CHLPD RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|119354906|gb|ABL65777.1| SSU ribosomal protein S12P methylthiotransferase [Chlorobium
           phaeobacteroides DSM 266]
          Length = 432

 Score =  308 bits (788), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 115/450 (25%), Positives = 193/450 (42%), Gaps = 33/450 (7%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
            F+ S GC  N  DS R+     + G       D AD I++NTC   E A E+  + +  
Sbjct: 6   VFLLSLGCSKNTVDSERLMAQAEASGITFTEEADLADTILINTCGFIEDAKEESIAEILA 65

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
               K   I  G    V V GC+++    E+    P ++   G +    L + +      
Sbjct: 66  AVEKKTQGIVSG----VYVMGCLSELYRTEMREELPEIDGFFGTRELPALLQAIGAQYRD 121

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           +                 + D          ++L I EGC++ C+FC +P  RG   S+ 
Sbjct: 122 E-----------------LYDHRSLLTPPHISYLKIAEGCNRSCSFCSIPKIRGRYRSQP 164

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
           + Q++ EA  L   GV E+ L+ Q+  +  G+ L G      +LL  LS+++    +R  
Sbjct: 165 MEQLLREAALLQKKGVRELNLIAQDT-SIYGRDLYGTPM-LRELLVRLSDME-FRWIRLL 221

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
            ++P D    +I A  +   +  YL LP+Q  +DRIL+SMNR  T  E  +++D IR+  
Sbjct: 222 YAYPLDFPLEVITAMSERKNICNYLDLPLQHCNDRILRSMNRGITKTETVRLLDTIRAAN 281

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           PDI + +  +VGFPGET  +F   M  ++ + + +   F Y      P   + + V    
Sbjct: 282 PDIRLRTTMLVGFPGETRAEFDELMQFIETMRFDRLGCFPYCHEEHAPSYALEDTVKAEE 341

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV-----LN 441
           K ER   L +         N    G+ + VLI++   E    + R+ +    V     L 
Sbjct: 342 KEERRAELMELQETIAKENNQLFEGKELTVLIDQI--EGDIAIARTEYDAPEVDNECYLT 399

Query: 442 SKNHNI--GDIIKVRITDVKISTLYGELVV 469
           + +  +  G+     I++     L+G +  
Sbjct: 400 TGSLRVGTGEFCTAHISESSAYELHGTITA 429


>gi|329942587|ref|ZP_08291397.1| RNA modification enzyme, MiaB family protein [Chlamydophila
           psittaci Cal10]
 gi|332287217|ref|YP_004422118.1| MiaB-like tRNA modifying enzyme [Chlamydophila psittaci 6BC]
 gi|313847811|emb|CBY16802.1| conserved hypothetical protein [Chlamydophila psittaci RD1]
 gi|325506891|gb|ADZ18529.1| MiaB-like tRNA modifying enzyme [Chlamydophila psittaci 6BC]
 gi|328815497|gb|EGF85485.1| RNA modification enzyme, MiaB family protein [Chlamydophila
           psittaci Cal10]
 gi|328914465|gb|AEB55298.1| MiaB-like tRNA modifying enzyme [Chlamydophila psittaci 6BC]
          Length = 422

 Score =  308 bits (788), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 121/446 (27%), Positives = 206/446 (46%), Gaps = 35/446 (7%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGY-ERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
            F +   GC++N Y+     D     GY E  +     DL ++NTC +   A       +
Sbjct: 9   TFKLVCLGCRVNQYEIQSYRDQLNFLGYREITDPEVPCDLCIVNTCAVTGSAESSGRHAV 68

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            ++        ++  D  +VV GC+ +A+ E          +V   + +  + ++     
Sbjct: 69  RQV-------CRQNPDAFLVVTGCLGEADREFFNSLDRQCLLVSNKEKHLLMEKIF---- 117

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
                     S++D  E       G +R     AF+ +Q+GC+ FC++C++PY RG   S
Sbjct: 118 ---------PSIQDLPEFRIRSFSGKSR-----AFIKVQDGCNSFCSYCIIPYLRGRSRS 163

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R + ++++E   L+  G  E+ + G NV  ++ +G      + + L+  + EI G+ R+R
Sbjct: 164 RPVQEILEEISGLVTQGYREVVIAGINVGDYQDQG-----KSLAYLISQVDEIPGIERIR 218

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
            ++  P D+ D L              HL +QSGS+ ILK MNR+++  ++   +D +RS
Sbjct: 219 ISSIDPEDVQDDLRDILLSGKHTCHSSHLVLQSGSNAILKRMNRKYSRGDFLDCVDALRS 278

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           V P  A ++D IVGFPGETD DF  T+ +V+ +G+ +   F +SPR  T       Q+  
Sbjct: 279 VDPQYAFTTDVIVGFPGETDQDFEETLRIVEDVGFIKVHIFPFSPRERTKAYTFSSQLPV 338

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
           +V  ER   L    RE         +G  + VL+E+   + G   G S +   V   +  
Sbjct: 339 SVINERKKHLAHVAREVAHREQMRRIGDTLSVLVERV--DGGFAYGHSSYFDMVGFPADP 396

Query: 445 HN--IGDIIKVRITDVKISTLYGELV 468
               +  +I VRI  V+   L G+ V
Sbjct: 397 SEVSVNTLIDVRIESVEEDVLKGKRV 422


>gi|45357975|ref|NP_987532.1| MiaB-like tRNA modifying protein [Methanococcus maripaludis S2]
 gi|44920732|emb|CAF29968.1| Protein of unknown function UPF0004:Deoxyribonuclease/rho
           motif-related TRAM [Methanococcus maripaludis S2]
          Length = 425

 Score =  308 bits (788), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 119/447 (26%), Positives = 221/447 (49%), Gaps = 28/447 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + +++ YGC +N  D+  +++     + +E  +++DD+D+IV+NTC +R++   ++ S +
Sbjct: 2   KIYIEGYGCTLNTADTQIIKNSVNEFEDFELTDNVDDSDIIVINTCIVRQETEHRMISRI 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
              ++L            VVVAGC+A+A  ++I     + +V++ P+       +L+   
Sbjct: 62  EYFKSLDKK---------VVVAGCMAKALSKKIEN---LADVLIMPREAQHSGNILKDKL 109

Query: 145 FGKRVVDTDYSVED-KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
                   + S ++  FE            +G+   L I EGC   CT+C+V   RG   
Sbjct: 110 LKDFSEKNNESTQNLNFEDKLNEKIKKVSSQGLITALPICEGCLGSCTYCIVKRARGNLA 169

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           S     +V +A +L+ +G   + +  Q+  A  G   +    +  +L+  +SEI     +
Sbjct: 170 SYDRDLIVKKAEELVKSGTKCLLVTAQDT-ACYGLDNND---SLPNLINDISEIPEKFAM 225

Query: 264 RYTTSHPRDMSDCLIKAHG--DLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R    H +     L +       + ++ +LHLP+QSG D++LK MNR +T  EY  +++ 
Sbjct: 226 RIGMMHAKFAEPILDELIESFKSEKVVKFLHLPIQSGDDQVLKDMNRNYTVDEYISVLNE 285

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
            +S   ++  ++D IVGFP ET++ F  T+++V KI      + KYS R  T  + +L+Q
Sbjct: 286 FKSKIKNLNFTTDVIVGFPTETEEAFENTLEIVKKIKPDFTHAAKYSQRKYTKAA-ILKQ 344

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           VD  ++ ER   L +  RE     N   +G+  E+L+ K        +G +   ++V+  
Sbjct: 345 VDTKIRKERSEILNELRRELSYENNKRHIGETFEILVTKDN------MGVTDNCKNVIFE 398

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
            +   IG+  +V+IT  K   L G+L+
Sbjct: 399 -EPAKIGEFKRVKITGAKTFGLSGKLI 424


>gi|15678846|ref|NP_275963.1| hypothetical protein MTH826 [Methanothermobacter thermautotrophicus
           str. Delta H]
 gi|6226399|sp|O26914|Y826_METTH RecName: Full=Putative methylthiotransferase MTH_826
 gi|2621916|gb|AAB85324.1| conserved protein [Methanothermobacter thermautotrophicus str.
           Delta H]
          Length = 424

 Score =  308 bits (788), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 128/444 (28%), Positives = 216/444 (48%), Gaps = 27/444 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R +++++GC  N  DS  M  +   +G      +DDAD+I++NTC+++     K    + 
Sbjct: 5   RVYIETFGCTFNQADSEIMAGVLREEGAVLTG-IDDADVIIINTCYVKHPTEHK---VIN 60

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           RI+ ++ +  ++G    +VVAGC+ + +  ++   S   +  +GP    R P+ +  A  
Sbjct: 61  RIKKIQETYPEKG----LVVAGCMVEIDPSKLEAISGDAS-WLGPHQLRRAPQAVRAASN 115

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G     T ++ + K      V     R   +   + I EGC+  C++C   + RG   S 
Sbjct: 116 GLVERITGFTSDVK------VKVPRVRSNPLIHIIPICEGCNGSCSYCCTRFARGRIQSY 169

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
               ++ EAR+ + +G  EI L  Q+  A  G    GEK   SD++  +S I G  R+R 
Sbjct: 170 PSDLIISEAREAVASGCREIQLTAQDTAA-YGVDT-GEK--LSDIIKGISGIPGNFRIRV 225

Query: 266 TTSHPRDMSDCL---IKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
              HP  +   L   ++A    + +  +LHLPVQSGSD +L  M R HT  E+R I++R 
Sbjct: 226 GMMHPASVLRDLDGLVEAF-KSEKVYSFLHLPVQSGSDSVLADMERGHTVDEFRMIVERF 284

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           RS  PDI+I++D IVG+P E  +DF  T  L++++  +     KY  R     S++ +++
Sbjct: 285 RSEIPDISIATDIIVGYPTEEREDFMDTCSLLEEVKPSFIHLSKYRHRPRARSSSL-DEI 343

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
           D      R   L++         N   VG   E+L+ + G++ G  +GR+     VV  +
Sbjct: 344 DFRELRRRSRALEELKMRITEEENRRLVGSFQEILVVERGRKGG-FIGRTGSYIPVVTET 402

Query: 443 KNHNIGDIIKVRITDVKISTLYGE 466
                G   +VRI D   + L  +
Sbjct: 403 GE--PGSFRRVRIRDATGTYLLAD 424


>gi|315502559|ref|YP_004081446.1| miab-like tRNA modifying enzyme ylig [Micromonospora sp. L5]
 gi|315409178|gb|ADU07295.1| MiaB-like tRNA modifying enzyme YliG [Micromonospora sp. L5]
          Length = 500

 Score =  308 bits (788), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 112/488 (22%), Positives = 189/488 (38%), Gaps = 62/488 (12%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +R  + + GC  N  DS  +     + G++     + AD++V+NTC   EKA +     L
Sbjct: 14  RRVALLTLGCARNEVDSEELAARLHADGWQVTTDGEGADVVVVNTCGFVEKAKQDSIQTL 73

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
               +             VV AGC+A+  G E+    P    V+    Y  +   L+   
Sbjct: 74  LAAAD---------TGAKVVAAGCMAERYGRELADSLPEAQAVLSFDDYPDIAARLDSVL 124

Query: 145 FGKRVVDTDYSVEDKFERLSIVD----------------------------------GGY 170
            G+ +    ++  D+ E L +                                      +
Sbjct: 125 AGEAI--GAHTPRDRRELLPLTPVKRRDAAVSLPGHGTPARVAPETDAHTPAHLRQVLRH 182

Query: 171 NRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQ 230
               G  A L +  GCD+ C FC +P  RG  +SR+  +++ EA  L   GV E+ L+ +
Sbjct: 183 RLDTGPVASLKLASGCDRRCAFCAIPAFRGAFVSRTPDELLAEAEWLAKTGVRELVLVSE 242

Query: 231 NVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY 290
           N  +  GK L G+      LL  L+ I G+VR+R +   P +    L++       +  Y
Sbjct: 243 NSTS-YGKDL-GDPRALEKLLPQLAAIDGIVRVRASYLQPAETRPGLVEVIATTPGVAAY 300

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
             L  Q  S+ +L+ M R  +   + +++   R++ PD    S+FIVGFPGET  D    
Sbjct: 301 FDLSFQHSSEPVLRRMRRFGSTDRFLELLASARALAPDAGARSNFIVGFPGETKQDVAEL 360

Query: 351 MDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACV 410
           +  + +        F YS   GT  + +  +V       R   L     E      +  +
Sbjct: 361 VRFLTEARLDAIGMFDYSDEDGTEAAGLTGKVSAATIKRRYDKLSALADELCSQRAEERL 420

Query: 411 GQIIEVLIEKHGKEKGKLVGR----SPWLQS----VVLNSKN-----HNIGDIIKVRITD 457
           G  +EVL++      G + GR    +P +      V              GD+++  +T 
Sbjct: 421 GATVEVLVD--STADGVVEGRAAHQAPEVDGSTTLVAPVGGGVDLAALRPGDLVRATVTA 478

Query: 458 VKISTLYG 465
            +   L  
Sbjct: 479 TEGVDLVA 486


>gi|302865999|ref|YP_003834636.1| MiaB-like tRNA modifying enzyme YliG [Micromonospora aurantiaca
           ATCC 27029]
 gi|302568858|gb|ADL45060.1| MiaB-like tRNA modifying enzyme YliG [Micromonospora aurantiaca
           ATCC 27029]
          Length = 500

 Score =  308 bits (788), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 112/488 (22%), Positives = 189/488 (38%), Gaps = 62/488 (12%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +R  + + GC  N  DS  +     + G++     + AD++V+NTC   EKA +     L
Sbjct: 14  RRVALLTLGCARNEVDSEELAARLNADGWQVTTDGEGADVVVVNTCGFVEKAKQDSIQTL 73

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
               +             VV AGC+A+  G E+    P    V+    Y  +   L+   
Sbjct: 74  LAAAD---------TGAKVVAAGCMAERYGRELADSLPEAQAVLSFDDYPDIAARLDSVL 124

Query: 145 FGKRVVDTDYSVEDKFERLSIVD----------------------------------GGY 170
            G+ +    ++  D+ E L +                                      +
Sbjct: 125 AGEAI--GAHTPRDRRELLPLTPVKRRDAAVSLPGHGTPARVAPETDAHTPAHLRQVLRH 182

Query: 171 NRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQ 230
               G  A L +  GCD+ C FC +P  RG  +SR+  +++ EA  L   GV E+ L+ +
Sbjct: 183 RLDTGPVASLKLASGCDRRCAFCAIPAFRGAFVSRTPDELLAEAEWLAKTGVRELVLVSE 242

Query: 231 NVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY 290
           N  +  GK L G+      LL  L+ I G+VR+R +   P +    L++       +  Y
Sbjct: 243 NSTS-YGKDL-GDPRALEKLLPQLAAIDGIVRVRASYLQPAETRPGLVEVIATTPGVAAY 300

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
             L  Q  S+ +L+ M R  +   + +++   R++ PD    S+FIVGFPGET  D    
Sbjct: 301 FDLSFQHSSEPVLRRMRRFGSTDRFLELLASARALAPDAGARSNFIVGFPGETKQDVAEL 360

Query: 351 MDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACV 410
           +  + +        F YS   GT  + +  +V       R   L     E      +  +
Sbjct: 361 VRFLTEARLDAIGMFDYSDEDGTEAAGLTGKVSAATIKRRYDKLSALADELCSQRAEERL 420

Query: 411 GQIIEVLIEKHGKEKGKLVGR----SPWLQS----VVLNSKN-----HNIGDIIKVRITD 457
           G  +EVL++      G + GR    +P +      V              GD+++  +T 
Sbjct: 421 GATVEVLVD--STADGVVEGRAAHQAPEVDGSTTLVAPVGGGVDLAALRPGDLVRATVTA 478

Query: 458 VKISTLYG 465
            +   L  
Sbjct: 479 TEGVDLVA 486


>gi|257439153|ref|ZP_05614908.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Faecalibacterium
           prausnitzii A2-165]
 gi|257198404|gb|EEU96688.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Faecalibacterium
           prausnitzii A2-165]
          Length = 409

 Score =  308 bits (788), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 117/426 (27%), Positives = 201/426 (47%), Gaps = 26/426 (6%)

Query: 47  MFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVA 106
           MF   G+  V   ++AD+ V+N+C +     +K   +L R +       +E    + V+ 
Sbjct: 1   MFRGAGFTIVPEGEEADVFVVNSCTVTNFGDQKSRKWLRRAK-------RENPGAVTVLT 53

Query: 107 GCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR--VVDTDYSVEDKFERLS 164
           GC  QA  EE  +     ++V G      + + + +   G    V  T +   + FE L 
Sbjct: 54  GCYPQAFPEEAAQFM-EADLVCGNGDRKAILDNVLKLLDGHERIVAVTPHQRGELFEELP 112

Query: 165 IVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCE 224
           +       +    AF+ +++GC++ C +CV+P  RG   SR+   ++ E R+L  +G  E
Sbjct: 113 V----ERFETHTRAFIKVEDGCNRQCAYCVIPRARGPVRSRAEDSILKELRQLAASGYRE 168

Query: 225 ITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL 284
           + L   ++ ++   GLD       +L+   ++++G+ R+R  +  P  ++   I     +
Sbjct: 169 VVLSAISLPSY---GLDTG-TNLVELVEKCAQVEGIERIRLGSLDPDMLTPEFITRLAAV 224

Query: 285 DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD--IAISSDFIVGFPGE 342
           + L P  HL +QSG    L+ M R +TA +Y Q++D+IR+   +  ++ ++D I GFPGE
Sbjct: 225 EKLCPQFHLSLQSGCTSTLRRMRRVYTAEQYAQVVDQIRAAYGERPVSFTTDCICGFPGE 284

Query: 343 TDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQ 402
           T  DF  +   + KIG+ +   F YS R GTP  +   QV E  K  R   +     E +
Sbjct: 285 TQADFEESCAFLKKIGFLKVHVFPYSRRSGTPAYDFPAQVHEREKQARSREMNALAEEVR 344

Query: 403 VSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKIST 462
                A VG   EVL+E    E     G +     VV+++  H  G+I+ VR+ +     
Sbjct: 345 REVLAAHVGTEDEVLLETPLSET-LFTGYTRLYIPVVVSAPGHKSGEIVHVRLGEYD--- 400

Query: 463 LYGELV 468
             GE V
Sbjct: 401 --GERV 404


>gi|94263081|ref|ZP_01286900.1| MiaB-like tRNA modifying enzyme [delta proteobacterium MLMS-1]
 gi|93456624|gb|EAT06732.1| MiaB-like tRNA modifying enzyme [delta proteobacterium MLMS-1]
          Length = 470

 Score =  307 bits (787), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 108/430 (25%), Positives = 186/430 (43%), Gaps = 25/430 (5%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           +R  V + GC++N Y+S          +G E V     AD+ V+NTC +  +A  +    
Sbjct: 10  KRVAVTTLGCKVNQYESAAFLSELAEREGVEIVPFEQAADVYVINTCAVTARAGAQSRQL 69

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +         R        +VV GC AQ   +E+L        +VG     R+ ++   A
Sbjct: 70  I--------RRAARCRRARLVVTGCYAQVAPQEVLELVGNPLCIVGNAHKERVAQI---A 118

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             G+      Y  E    R               A L +Q+GC + C++C+VP  RG   
Sbjct: 119 AAGRSCDLEMYHGEMGDCRQVAPLLVKAATARSRAVLKVQDGCSQACSYCIVPRARGRSR 178

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           S    +V+ +A      G  E  L G ++    G+ L         L   L+     +R 
Sbjct: 179 SVLPERVLRQAEIFAAAGHREAVLTGIHLG-HYGRDLTPPGSLLGLLEQLLAR-DLPLRY 236

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R ++    ++   L+        L+P+LH+P+QSG DRIL++MNR +   ++  +I+R  
Sbjct: 237 RLSSLEATEIGPDLLALLAAESRLLPHLHIPLQSGDDRILRAMNRPYDRAQFAAVIERCA 296

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           +  P+ AI  D + GFPGE +  F+ T +L+  +  +    F YS R GTP + + +QV 
Sbjct: 297 AALPEAAIGIDVMTGFPGEDEPAFQHTYELLAALPISYLHVFPYSQRAGTPAARLPDQVP 356

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-----------KEKGKLVGRS 432
             V+ +R   L++    ++++F    +G+   VL+E              ++  +L G +
Sbjct: 357 GPVRDQRAARLRELGESKKIAFYQRFLGRQRRVLVEGAVNRPEVTDNGGHEQPERLRGYT 416

Query: 433 PWLQSVVLNS 442
                V   +
Sbjct: 417 DNYIPVTFAA 426


>gi|182680305|ref|YP_001834451.1| MiaB-like tRNA modifying enzyme [Beijerinckia indica subsp. indica
           ATCC 9039]
 gi|182636188|gb|ACB96962.1| MiaB-like tRNA modifying enzyme [Beijerinckia indica subsp. indica
           ATCC 9039]
          Length = 435

 Score =  307 bits (787), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 130/439 (29%), Positives = 199/439 (45%), Gaps = 30/439 (6%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           S+GC++N  ++  M     + G+E        +L+++N+C +  +A  +    + R++  
Sbjct: 14  SFGCRLNFVEAETMRRAAKAAGFE--------NLVIVNSCAVTAEATRQTRQAIRRVK-- 63

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE-RARFGKRV 149
                +E  +  +VV GC A+ E E   R  P V +V+G          L  + +     
Sbjct: 64  -----REQPEAKIVVTGCAAETEPER-FRAMPEVGLVLGNARKTEAATWLALKHQASDLP 117

Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209
           +D  ++      RLS   G  +  R   AFL +Q GCD  C+FC++P  RG   S  L  
Sbjct: 118 LDAPHAEALHRPRLSPQAGTEDHTR---AFLAVQNGCDHRCSFCIIPQGRGSSRSVPLDD 174

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSH 269
            +  AR L   G  EI L G ++ +  G  L         +   L E+  L RLR ++  
Sbjct: 175 AIAMARDLAARGFLEIVLTGVDLTS-YGSDLPDVPRLGDLVRRILREVPSLPRLRLSSID 233

Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329
             +    L++   + + LMP LHL +Q+GSD ILK M RRH   +  +    +R +RPDI
Sbjct: 234 CIEADPVLVRCFAEEERLMPSLHLSLQAGSDLILKRMQRRHGRTDAIRFCAELRRLRPDI 293

Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAE 389
           A S+D I GFP ET+  F  T+DLVD  G      F +S R GTP + M   V   +  E
Sbjct: 294 AFSADLIAGFPTETEAQFTDTLDLVDACGLTSLHVFPFSARPGTPAARMP-AVAPTIVKE 352

Query: 390 RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGD 449
           R   L++K      S     VG    +L E+ G      + R+     V L   N   G 
Sbjct: 353 RARRLREKGTLALASHLGTHVGHRRRLLSERGG------LARTEDFAPVRL--HNIAPGR 404

Query: 450 IIKVRITDVKISTLYGELV 468
           +++  IT      L G +V
Sbjct: 405 LVEALITGSDGEVLQGAIV 423


>gi|329939936|ref|ZP_08289218.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Streptomyces
           griseoaurantiacus M045]
 gi|329300762|gb|EGG44658.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Streptomyces
           griseoaurantiacus M045]
          Length = 462

 Score =  307 bits (786), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 118/456 (25%), Positives = 195/456 (42%), Gaps = 41/456 (8%)

Query: 48  FFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAG 107
             + G++ V   +DAD+ V+NTC   + A +     L    +LK+     G    VV  G
Sbjct: 1   MEADGWQLVEDAEDADVAVVNTCGFVDAAKKDSVDALLEANDLKD----HGRTRAVVAVG 56

Query: 108 CVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL--------------------------E 141
           C+A+  G+E+    P  + V+G   Y  + + L                          E
Sbjct: 57  CMAERYGKELAEALPEADGVLGFDDYADISDRLQTILSGGIHAAHTPRDRRKLLPISPAE 116

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRG-----VTAFLTIQEGCDKFCTFCVVP 196
           R   G  V    +   D  E L+   G     R      + A + +  GCD+ C+FC +P
Sbjct: 117 RQEAGTAVALPGHGPVDLPEGLAPASGPRAPLRRRLGGALVASVKLASGCDRRCSFCAIP 176

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256
             RG  ISR  S V++E R L + GV E+ L+ +N N   GK L G+      LL  L+E
Sbjct: 177 SFRGSFISRRPSDVLNETRWLAEQGVKEVMLVSEN-NTSYGKDL-GDIRLLESLLPELAE 234

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           + G+ R+R +   P +M   LI        + PY  L  Q  +  +L++M R      + 
Sbjct: 235 VDGIERVRVSYLQPAEMRPGLIDVLTSTPKVAPYFDLSFQHSAPGVLRAMRRFGDTDRFL 294

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
           +++D IR+  P+  + S+FIVGFPGE++ D       ++         F YS   GT  +
Sbjct: 295 ELLDTIRNKAPEAGVRSNFIVGFPGESEADLAELERFLNGARLDAIGVFGYSDEDGTEAA 354

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPW 434
               ++D +  AERL  + +   E      D  +G  + VL+E   ++   G+   ++P 
Sbjct: 355 TYENKLDADTVAERLDRVSRLAEELVAQRADERLGSTVHVLVESVDEDGVHGRAAHQAPE 414

Query: 435 LQS-VVLNSKNHN-IGDIIKVRITDVKISTLYGELV 468
               V L        G +++ ++   +   L  E +
Sbjct: 415 TDGQVRLTGGEGLDAGRMVEAKVVGAEGVDLVAEPL 450


>gi|298293310|ref|YP_003695249.1| MiaB-like tRNA modifying enzyme [Starkeya novella DSM 506]
 gi|296929821|gb|ADH90630.1| MiaB-like tRNA modifying enzyme [Starkeya novella DSM 506]
          Length = 428

 Score =  307 bits (786), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 132/447 (29%), Positives = 212/447 (47%), Gaps = 32/447 (7%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
              V ++GC++N  DS     M  + G ER         +++NTC +  +A ++    + 
Sbjct: 6   TVEVVTFGCRLNALDSATARAMAGAAGLERA--------VIVNTCAVTGEAVKQARQAIR 57

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG------PQTYYRLPEL 139
           R++       +E  +  +VV GC AQ E     R +  V+ V+G      P+++      
Sbjct: 58  RLK-------REDPERRIVVTGCAAQTEPAGFARMA-EVDGVLGNEEKLSPESWAATRRA 109

Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT-AFLTIQEGCDKFCTFCVVPYT 198
           L+     +  +     +  +     ++DG  +   G T AF+ +Q GCD  CTFC++PY 
Sbjct: 110 LDFGIDNEEKILVGDIMAVRETAPHLLDGPADTIDGHTRAFVQVQNGCDHRCTFCIIPYG 169

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258
           RG   S  +  VV+  R L++ G  E+ L G ++ +W G  L G     + +   L  + 
Sbjct: 170 RGNSRSVPMGAVVERVRALVEQGFGEVVLTGVDLTSW-GADLPGTPRLGALVRALLKHVP 228

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
            L RLR ++    +    L++A  + + LMP+LHL +Q+G+D ILK M RRH   +  + 
Sbjct: 229 ELRRLRLSSIDSIEADGDLLRAFAEEERLMPHLHLSLQAGNDLILKRMKRRHLRRDAIRF 288

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
              +R +RPD+ + +D I GFP ET+  FRA++DLVD  G      F +SPR GTP + M
Sbjct: 289 CAEVRRLRPDMVLGADLIAGFPTETEAQFRASLDLVDACGLTHLHVFPFSPRPGTPAARM 348

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSV 438
             QV   V  +R   L++K  E  +      VG   EVL E+ G      + R+     V
Sbjct: 349 P-QVAGEVIKDRARRLREKGAEALLRHLAGEVGMSREVLAERGG------IARTAGFTPV 401

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYG 465
            L  +    G +  VRI     + L  
Sbjct: 402 RL-GRPLAPGTLTTVRIAGHDGARLIA 427


>gi|213416623|ref|ZP_03349767.1| hypothetical protein Salmonentericaenterica_01023 [Salmonella
           enterica subsp. enterica serovar Typhi str. E01-6750]
          Length = 297

 Score =  307 bits (786), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 144/306 (47%), Positives = 204/306 (66%), Gaps = 11/306 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++  +K++GCQMN YDS +M D+  +  GY+  +  ++AD+++LNTC IREKA EKV+
Sbjct: 1   MTKKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTDVAEEADVLLLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR R LK        DL++ V GCVA  EGE I +R+  V+++ GPQT +RLPE++ 
Sbjct: 61  HQLGRWRLLKEK----NPDLIIGVGGCVASQEGEHIRQRAHYVDIIFGPQTLHRLPEMIN 116

Query: 142 RARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
             R  +  VVD  +   +KF+RL        R  G TAF++I EGC+K+CT+CVVPYTRG
Sbjct: 117 SVRGDRSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTYCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR    ++ E  +L   GV E+ LLGQNVNAWRG+  DG   TF+DLL  ++ I G+
Sbjct: 172 EEVSRPSDDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTTGTFADLLRLVAAIDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R+TTSHP + +D +I+ + D   L+ +LHLPVQSGSDR+L  M R HTA EY+ II 
Sbjct: 232 DRIRFTTSHPIEFTDDIIEVYRDTPELVSFLHLPVQSGSDRVLNLMGRTHTALEYKAIIR 291

Query: 321 RIRSVR 326
           ++R+ R
Sbjct: 292 KLRAAR 297


>gi|326429727|gb|EGD75297.1| cdk5 regulatory subunit associated protein 1 [Salpingoeca sp. ATCC
           50818]
          Length = 530

 Score =  307 bits (786), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 111/445 (24%), Positives = 197/445 (44%), Gaps = 29/445 (6%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
            +++++GC  N  D   M  +  + GYE V     ADL +LN+C ++  + +   + +  
Sbjct: 55  VYIRTWGCSHNTSDGEYMAGVLSAAGYEIVKDKMTADLWILNSCTVKTPSEDTFNNAIRE 114

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
            + L            +V+AGCVAQA+    + +      +VG     R+ E++E    G
Sbjct: 115 GQKLGKK---------LVLAGCVAQAQPRGKMTQG---LSIVGIHQIDRVLEVVEETLQG 162

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           + V     S +      + +     R+  +   + I  GC   CT+C   + RG   S  
Sbjct: 163 RTVRL--LSKKSSGAGGAPLAMPKIRRNELIEIIPINTGCLNQCTYCKTKHARGQLNSYP 220

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI-KGLVRLRY 265
             ++V   R+++  GV EI L  ++     G+  D    T  +LL+ + E+    V LR 
Sbjct: 221 ADEIVARVRQVVAEGVVEIWLTSEDTGT-YGRDRDD---TIVNLLWKIIEVLPDGVMLRV 276

Query: 266 TTSHPRDMSDCL--IKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
             ++P  + + L  +    +   +  +LH+P+Q+ SD +L +M R +   E+  I+D +R
Sbjct: 277 GMTNPPYILEHLEEMAKILNHPRVYAFLHIPIQAASDAVLTTMKREYNCEEFCHIVDFLR 336

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              P++ I++D I GFPGET++DF+ TMDL +K  +   F  +             E + 
Sbjct: 337 ERVPNVTIATDIICGFPGETEEDFQETMDLCEKYKFPSLFINQAHLLP-----AWRELIP 391

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
             VK  R   L +    Q     +  +GQ   VL+     +    V  +     V++  +
Sbjct: 392 ATVKK-RTKRLSELF--QSYLPYEHKLGQRQRVLVTDVSTDGNYFVAHNKSFDQVLVPRR 448

Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468
              +G +I V IT      L G +V
Sbjct: 449 PEIMGKMITVDITATGKHFLMGRVV 473


>gi|34541783|ref|NP_906262.1| MiaB-like tRNA modifying enzyme [Porphyromonas gingivalis W83]
 gi|34398101|gb|AAQ67161.1| MiaB-like tRNA modifying enzyme [Porphyromonas gingivalis W83]
          Length = 444

 Score =  307 bits (786), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 119/426 (27%), Positives = 188/426 (44%), Gaps = 16/426 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++    + GC++N  ++  +      QG   V   + AD+ V+NTC + E A +K  + +
Sbjct: 10  KKAAFLTLGCKLNFAETSTIGKALAEQGVRPVREGEKADICVINTCSVTELADKKCRNAI 69

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            ++        KE    L++V GC AQ + EEI  R   V++V+G      L  +L +  
Sbjct: 70  RKLH-------KEHPGALMIVTGCYAQLKPEEIA-RIDGVDIVLGADEKLDLVSILSQRP 121

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
                  T  +   K   +     G +       FL +Q+GCD  C++C +P  RG   +
Sbjct: 122 IQGFAEQTILTTPTK--DIRKFQPGCSADDRTRHFLKVQDGCDYHCSYCTIPKARGRSRN 179

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
            S+  +V +A  +   G  EI L G N+    G        TF DLL +L +++G+ R R
Sbjct: 180 GSIESLVRQAEAVAAEGGKEIVLTGVNI----GDFGRSTGETFLDLLRALDQVEGIERYR 235

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
             +  P  +SD LI        + P+ H+P+QSGSD +LK M RR+    +R+ ++ IR 
Sbjct: 236 IGSIEPNLLSDELIDFCASAHRIAPHFHMPLQSGSDDVLKLMRRRYDTALFRERVEHIRR 295

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLV-DKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
             P   I  D IVG  GE  + F      + DKI +++   F YS R GT    +  +VD
Sbjct: 296 ALPHAFIGIDVIVGTRGEKPEFFEDCYSFLQDKISFSRLHVFSYSERPGTQALQIPYKVD 355

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
              K  R   L      +   F  +  G    VL E    E G + G +     V     
Sbjct: 356 AREKQRRSRRLLDLSDLRLAEFYRSQEGTHRRVLWEDVCHE-GLMQGFTENYIRVAAPYA 414

Query: 444 NHNIGD 449
             ++G 
Sbjct: 415 ADSVGK 420


>gi|285017767|ref|YP_003375478.1| hypothetical protein XALc_0973 [Xanthomonas albilineans GPE PC73]
 gi|283472985|emb|CBA15490.1| hypothetical protein XALc_0973 [Xanthomonas albilineans]
          Length = 413

 Score =  307 bits (786), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 109/381 (28%), Positives = 175/381 (45%), Gaps = 20/381 (5%)

Query: 102 LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFE 161
            V+V GC+ +   E+I    P V  V GPQ Y  + E +  A   +     D     +  
Sbjct: 24  KVIVTGCLGKRS-EQIRAAYPDVLAVSGPQDYQSVMEAVHAALPPRHDPFVDLLPRGRGS 82

Query: 162 RLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNG 221
                D G        A+L I EGC+  C+FC++P  RG  +SR + +V+ EA +L+  G
Sbjct: 83  SED--DIGVKLTPRHYAYLKISEGCNHRCSFCIIPSMRGDLVSRPVDEVLREAERLVKGG 140

Query: 222 VCEITLLGQNVNAWRGKGLDGEK--------CTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
           V E+ ++ Q+ +A+       E+           + L   L+E+    RL Y   +P   
Sbjct: 141 VRELLIVSQDTSAYGVDLKYAEREWRGRAYQTRMTALCEGLAELGAWTRLHYVYPYPHVD 200

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
               + A G    L+PYL +P Q  S RILK M R        + + R R++ PDI + S
Sbjct: 201 DVIPLMAEG---KLLPYLDIPFQHASPRILKLMKRPGAVERTLERVQRWRALCPDITLRS 257

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLC 393
            FIVGFPGETD +F   ++ +D     +  +F YSP  G   + + + V E +K ERL  
Sbjct: 258 TFIVGFPGETDAEFEQLLEFLDAAQLDRVGAFAYSPVEGASANALPDPVPEALKQERLAR 317

Query: 394 LQKKLREQQVSFNDACVGQIIEVLIE--KHGKEKGKLVGRSPWLQS-VVLNSKNH---NI 447
              +  E   +  DA +G + E L++  +      +    +P +   V + +        
Sbjct: 318 FMARQAEISAARLDAKIGSVQECLVDLLEDSIAVARSKADAPEIDGLVHIQNGAESGLKP 377

Query: 448 GDIIKVRITDVKISTLYGELV 468
           GD+++V ITD     L+G+ +
Sbjct: 378 GDLVQVEITDSDEHDLFGDAL 398


>gi|307200648|gb|EFN80756.1| CDK5 regulatory subunit-associated protein 1 [Harpegnathos
           saltator]
          Length = 1337

 Score =  307 bits (786), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 120/458 (26%), Positives = 211/458 (46%), Gaps = 52/458 (11%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           Q+ + + YGCQMNV D+  +  +  ++GY++   M+ AD+++L TC IR+ A +KV++ L
Sbjct: 70  QKVYFEIYGCQMNVNDTEIIWSILKARGYQQTKDMEGADIVLLITCSIRDNAEQKVWNKL 129

Query: 85  GRIRNLKNSR-IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
             +  ++N R  K G  + + + GC+A+    +IL +  +V+V+ GP +Y  LP LL   
Sbjct: 130 EYLNVIRNKRRKKSGVSMKIGLLGCMAERLKTKILDKGKLVDVIAGPDSYKDLPRLL-AV 188

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
              +  V+   S ++ +  +                                        
Sbjct: 189 TDSETAVNVVLSFDETYADVMPGIKEVTL------------------------------- 217

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK--CTFSDLLYSLSEIKGLV 261
              L Q V+  R L           G ++         G+K    F DLL  +S I   +
Sbjct: 218 ---LGQNVNSYRDLSQLQFVVPVGTGTHLAKGFKTVYKGKKGGLRFCDLLDKVSLIDPEM 274

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+T+ HP+D  D ++    +   +   +HLP QSG+  +L  M R +T   Y  ++  
Sbjct: 275 RVRFTSPHPKDFPDEVLHLIAERPNICKQIHLPAQSGNSAVLVRMRRGYTREAYLDLVHN 334

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLE 380
           IR + PD+ +S+DFI GF GET+++F+ T+ L++++ Y  A+ F YS R  T       +
Sbjct: 335 IRDILPDVYLSADFIAGFCGETEEEFQDTLSLLEQVKYNYAYMFAYSMREKTTAHRRYKD 394

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVV 439
            V++ VK ER+  +    R +    N A +GQ   VL+E   +   + L GR+     ++
Sbjct: 395 DVEQRVKIERVARMITLYRREAEKLNKAQIGQRQLVLVEGVSRRTDRNLQGRNDGNVRIL 454

Query: 440 LN------------SKNHNIGDIIKVRITDVKISTLYG 465
           L             ++    GD + V+I +    +L  
Sbjct: 455 LPPAVIPVNRHSDSTREMRAGDYVVVQIDNANSQSLRA 492


>gi|327537949|gb|EGF24646.1| RNA modification enzyme, MiaB family [Rhodopirellula baltica WH47]
          Length = 428

 Score =  306 bits (785), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 111/454 (24%), Positives = 206/454 (45%), Gaps = 42/454 (9%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           +  +   ++ GC++N Y++  +     + GYE  +  + ADL ++NTC + E    K   
Sbjct: 1   MTAKLRTRTLGCKVNQYETELVRQGLQTIGYEDASDGESADLCIVNTCTVTETGDAKSRQ 60

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            + R+        +E  D  +VV GC A    EE+     +V V+   +           
Sbjct: 61  VVRRLN-------RENPDARIVVMGCYATRAPEEVSALPGVVEVLTDKRELGD------- 106

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
                        +  +F  + +  G         A++ +Q+GC   C++C++P  R   
Sbjct: 107 -------------LMGRFGVIDVPTGLSGFAGRKRAYVKVQDGCLLRCSYCIIPMVRPKL 153

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT-----FSDLLYSLSEI 257
            SR   ++VDE  +L+D G  E+ L G ++    G   +  K        + L+  L +I
Sbjct: 154 HSRPSQEIVDEVTRLVDAGHREVILTGIHLG-HYGVDWNRNKPREEWVRLAHLVKDLCQI 212

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLD-VLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
            G  R+R ++    +++  LI    +    ++P+LHL +QSGSD +L+ M RR     + 
Sbjct: 213 PGQFRIRMSSIEATEVTRELIGVMAEFPDKVVPHLHLCLQSGSDSVLRRMRRRWGTKMFL 272

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
                +R      AI++D I GFPGET+++F  T+    + G+++  +F YS R GTP +
Sbjct: 273 DRCRLLRESLDRPAITTDIIAGFPGETEEEFEQTLRTCREAGFSKIHAFPYSARRGTPAA 332

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWL- 435
              +Q+D+ + +ER+  L +   E +  + +  VG  +E+L+E+   + G+L G +    
Sbjct: 333 ERDDQLDKGLISERVDRLGEVEAELRQQYYETLVGSDLELLVEEVTPD-GRLQGTTCRYA 391

Query: 436 -----QSVVL-NSKNHNIGDIIKVRITDVKISTL 463
                +      +      D+I  R+  V+   L
Sbjct: 392 LGSIERPANASEADALRENDLITARVVSVQDDRL 425


>gi|94266362|ref|ZP_01290062.1| MiaB-like tRNA modifying enzyme [delta proteobacterium MLMS-1]
 gi|93453045|gb|EAT03530.1| MiaB-like tRNA modifying enzyme [delta proteobacterium MLMS-1]
          Length = 470

 Score =  306 bits (785), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 108/430 (25%), Positives = 185/430 (43%), Gaps = 25/430 (5%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           +R  V + GC++N Y+S          +G E V     AD+ V+NTC +  +A  +    
Sbjct: 10  KRVAVTTLGCKVNQYESAAFLSELAEREGVEIVPFEQAADVYVINTCAVTARAGAQSRQL 69

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +         R        +VV GC AQ   +E+L        +VG     R+ ++   A
Sbjct: 70  I--------RRAARCRRARLVVTGCYAQVAPQEVLELVGNPLCIVGNAHKERVAQI---A 118

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             G+      Y  E    R               A L +Q+GC + C++C+VP  RG   
Sbjct: 119 AAGRSCDLEMYHGEMGDCRQVAPLLVKAATARSRAVLKVQDGCSQACSYCIVPRARGRSR 178

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           S    +V+ +A      G  E  L G ++    G+ L         L   L+     +R 
Sbjct: 179 SVLPERVLRQAEIFAAAGHREAVLTGIHLG-HYGRDLTPPGSLLGLLEQLLAR-DLPLRY 236

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R ++    ++   L+        L+P+LH+P+QSG DRIL++MNR +    +  +I+R  
Sbjct: 237 RLSSLEATEIGPDLLALLAAESRLLPHLHIPLQSGDDRILRAMNRPYDRARFAAVIERCA 296

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           +  P+ AI  D + GFPGE +  F+ T +L+  +  +    F YS R GTP + + +QV 
Sbjct: 297 AALPEAAIGIDVMTGFPGEDEPAFQHTYELLAALPISYLHVFPYSQRAGTPAARLPDQVP 356

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-----------KEKGKLVGRS 432
             V+ +R   L++    ++++F    +G+   VL+E              ++  +L G +
Sbjct: 357 GPVRDQRAARLRELGESKKIAFYQRFLGRQRRVLVEGAVNRPEVTDHGGHEQPERLRGYT 416

Query: 433 PWLQSVVLNS 442
                V   +
Sbjct: 417 DNYIPVTFAA 426


>gi|258591968|emb|CBE68273.1| tRNA 2-methylthioadenosine synthase-like protein [NC10 bacterium
           'Dutch sediment']
          Length = 447

 Score =  306 bits (785), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 130/443 (29%), Positives = 209/443 (47%), Gaps = 13/443 (2%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R  +K+ GC+ N  +S  +++     G+  V   D ADL ++NTC + ++A       + 
Sbjct: 2   RVAIKTLGCRQNQCESDAIQESLRRDGHTAVGPDDAADLFIINTCSVTQEADADSRQMIR 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R        ++      VVV GC AQ    EI    P V +V G     +L E++   R 
Sbjct: 62  RA-------VRRNPSARVVVTGCYAQIAAGEIAA-IPGVALVAGNGEKAQLSEMISGLRE 113

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
               +     ++       +       +    A L +Q+GC   CTFC+VP TRG   S+
Sbjct: 114 QSSPLIAVSDIQQSTRFAPLPPPIGATRS--RALLKVQDGCSYRCTFCIVPETRGPNRSQ 171

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           S   V+ + R L+D G  E+ L G ++    G+ L     + + L+  + E     RLR 
Sbjct: 172 STDAVLRDLRVLVDAGYPEVVLTGTHLGT-YGRDLSTG-SSIAGLVADMLETAAPARLRL 229

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
           ++  P ++ + LI   G  + L  +LHLPVQSG + +LK M R HTA ++R++++R+   
Sbjct: 230 SSLDPHEVGEELIGCFGRFENLCRHLHLPVQSGDETVLKRMRRPHTADDFRRLVERLAET 289

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P IAI +D IVGFPGE D +F  T  L+D++  A    F YS R GT  + M   V ++
Sbjct: 290 VPGIAIGTDVIVGFPGEGDAEFEQTYRLLDRLPIAYLHVFNYSQRRGTVAAVMPNHVPKD 349

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQII-EVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
           V+A R   L+     +  +F    VGQ    V++E      G+L   +    +V +    
Sbjct: 350 VRAARSAALRALSDAKWRAFRQTQVGQSFAAVVLEGRDAPTGRLDALTDNYITVQVERTE 409

Query: 445 HNIGDIIKVRITDVKISTLYGEL 467
            ++G ++ + I  V      G L
Sbjct: 410 ESVGRMVALSIETVTERETIGRL 432


>gi|188995948|ref|YP_001930200.1| putative Fe-S oxidoreductase [Porphyromonas gingivalis ATCC 33277]
 gi|188595628|dbj|BAG34603.1| putative Fe-S oxidoreductases [Porphyromonas gingivalis ATCC 33277]
          Length = 444

 Score =  306 bits (785), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 119/426 (27%), Positives = 188/426 (44%), Gaps = 16/426 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++    + GC++N  ++  +      QG   V   + AD+ V+NTC + E A +K  + +
Sbjct: 10  KKAAFLTLGCKLNFAETSTIGKALAEQGVRPVREGEKADICVINTCSVTELADKKCRNAI 69

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            ++        KE    L++V GC AQ + EEI  R   V++V+G      L  +L +  
Sbjct: 70  RKLH-------KEHPGALMIVTGCYAQLKPEEIA-RIDGVDIVLGADEKLDLVSILSQRP 121

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
                  T  +   K   +     G +       FL +Q+GCD  C++C +P  RG   +
Sbjct: 122 IQGFAEQTILTTPTK--DIRKFQPGCSADDRTRHFLKVQDGCDYHCSYCTIPKARGRSRN 179

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
            S+  +V +A  +   G  EI L G N+    G        TF DLL +L +++G+ R R
Sbjct: 180 GSIESLVRQAEAVAAEGGKEIVLTGVNI----GDFGRSTGETFLDLLRALDQVEGIERYR 235

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
             +  P  +SD LI        + P+ H+P+QSGSD +LK M RR+    +R+ ++ IR 
Sbjct: 236 IGSIEPNLLSDELIDFCASAHRIAPHFHMPLQSGSDDVLKLMRRRYDTALFRERVEHIRR 295

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLV-DKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
             P   I  D IVG  GE  + F      + DKI +++   F YS R GT    +  +VD
Sbjct: 296 ALPHAFIGIDVIVGTRGEKPEFFEDCYSFLQDKISFSRLHVFSYSERPGTQALQIPYKVD 355

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
              K  R   L      +   F  +  G    VL E    E G + G +     V     
Sbjct: 356 AREKQRRSRRLLDLSDLRLGEFYRSQEGTHRRVLWEDVCHE-GLMQGFTENYIRVAAPYA 414

Query: 444 NHNIGD 449
             ++G 
Sbjct: 415 PDSVGK 420


>gi|150403330|ref|YP_001330624.1| MiaB-like tRNA modifying protein [Methanococcus maripaludis C7]
 gi|150034360|gb|ABR66473.1| MiaB-like tRNA modifying enzyme [Methanococcus maripaludis C7]
          Length = 425

 Score =  306 bits (785), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 120/447 (26%), Positives = 220/447 (49%), Gaps = 28/447 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + +++ YGC +N  D+  +++     + +E  +++DD+D+IV+NTC +R++   ++ S +
Sbjct: 2   KIYIEGYGCTLNTADTEIIKNSVNEFEEFELADNVDDSDIIVINTCIVRQETEHRMISRI 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
              ++L            VVVAGC+A+A  ++I     + +V++ P+       +L+   
Sbjct: 62  EYFKSLDKK---------VVVAGCMAKALPKKIKN---LADVLIMPREAQYSGIILKDNL 109

Query: 145 FGKRVVD-TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             +      +Y+    FE            +G+   L I EGC   CT+C+V   RG  +
Sbjct: 110 LKECSEKYNEYNQNLNFEDNLNEKIKKVSSQGLITALPICEGCLGSCTYCIVKRARGNLV 169

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           S     +V +A +L+  G   + +  Q+  A  G      K   S+L+  +SEI     +
Sbjct: 170 SYDRDLIVKKAEELVKTGTKCLLVTAQDT-ACYGLD---NKDNLSNLIDDISEIPEKFAM 225

Query: 264 RYTTSHPRDMSDCLIKAHG--DLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R    H +     L +       + ++ +LHLP+QSG D++LK MNR +T  EY  ++D 
Sbjct: 226 RIGMMHAKFAEPILDELIESFKSEKVVKFLHLPIQSGDDQVLKDMNRNYTVDEYISVLDE 285

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
            +S   ++  ++D IVGFP ET++ F  T+++V KI      + KYS R  T  + + +Q
Sbjct: 286 FKSKIKNLNFTTDVIVGFPTETEEAFENTLEIVKKIKPDFTHAAKYSQRKYTKAAVL-KQ 344

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           VD  ++ ER   L +  RE     N   +G+  E+L+ K+       +G +   ++V+  
Sbjct: 345 VDTKIRKERSEILNELRRELSYENNKRHIGETFEILVTKNN------LGVTNNCKNVIFE 398

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
            +   IG+  + +IT  K   L G+L+
Sbjct: 399 -EPAQIGEFKRAKITGAKTFGLSGKLL 424


>gi|78777220|ref|YP_393535.1| MiaB-like tRNA modifying enzyme [Sulfurimonas denitrificans DSM
           1251]
 gi|78497760|gb|ABB44300.1| MiaB-like tRNA modifying enzyme [Sulfurimonas denitrificans DSM
           1251]
          Length = 415

 Score =  306 bits (784), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 125/445 (28%), Positives = 218/445 (48%), Gaps = 30/445 (6%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + ++ + K++GC+ N+YDS  M        Y+   +  +AD++V+N+C +   A   V S
Sbjct: 1   MKKKVYFKTFGCRTNLYDSQVMMSSLKE--YDITENESEADVVVINSCTVTNGADSHVRS 58

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
           ++  +           G   + + GC A  +GE +L +   V  V G     ++ E+L +
Sbjct: 59  YISHVEK--------NGGAKIFLTGCGAHTKGESLLSQ-GRVAGVFGQSEKVKIDEMLNK 109

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
                   D ++  E      S+VD    + R   AF+ IQEGC+  C++C++PY RG  
Sbjct: 110 DEPFYEPGDLNHIDE------SVVDDFIGKSR---AFIKIQEGCNFRCSYCIIPYVRGDA 160

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            S    +++++ R+L  NG  E  L G NV +  G+  D    + + L+  +S+I+G+ R
Sbjct: 161 RSMDEEKILEQIRRLARNGFGEFILTGTNVGS-YGQKND---SSIASLMKKISQIRGVRR 216

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R  +  P  ++D   K   D   L  +LH+ +Q  S +ILK MNRR+   + R++ + +
Sbjct: 217 IRVGSVEPIQINDEF-KEILDEPWLERHLHIALQHTSPQILKLMNRRNVYKQDRELFELL 275

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
            S     AI +DFI G PGE+   +   M  V ++      +F YS R  TP + M  +V
Sbjct: 276 SSK--GFAIGTDFITGHPGESSSLWSEAMRNVKELPLTHLHAFTYSKRDSTPSATMKPEV 333

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
              V  ERL  L+  ++E+  +F  A  G  ++VLIE   ++    +G       +V+ S
Sbjct: 334 SGAVAKERLHELESIVKEKNFAFRKAFRG-TLDVLIE--SQKDDFFIGYDQHFNKIVVRS 390

Query: 443 KNHNIGDIIKVRITDVKISTLYGEL 467
               +G+ I +   +VK  + YG +
Sbjct: 391 DEDLLGNWINISDYEVKEESNYGRV 415


>gi|189500918|ref|YP_001960388.1| MiaB-like tRNA modifying enzyme [Chlorobium phaeobacteroides BS1]
 gi|189496359|gb|ACE04907.1| MiaB-like tRNA modifying enzyme [Chlorobium phaeobacteroides BS1]
          Length = 451

 Score =  306 bits (784), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 137/468 (29%), Positives = 219/468 (46%), Gaps = 33/468 (7%)

Query: 18  VDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA 77
           +D     +R F  + GC++N  ++  +   F   G+E  +S D  DLI+++TC +  +A 
Sbjct: 1   MDNVGKKKRVFAITLGCKLNYAETSSILARFVKNGWEIADSDDIPDLIIIHTCAVTSQAG 60

Query: 78  EKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLP 137
           +K    + ++       IK+     + V GC AQ   + +      V+V++G +  Y   
Sbjct: 61  QKSRQQIRKM-------IKKYPLSRIAVTGCYAQMYPDSVET-IDGVHVILGVREKYIPE 112

Query: 138 ELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRG-VTAFLTIQEGCDKFCTFCVVP 196
           + ++  +  + V     S E   +          R++G   AFL IQ+GCD  C +C +P
Sbjct: 113 KYIKDVQ--EAVYREVASPETIKDAEPAHSLIEKREKGRTRAFLKIQDGCDYACAYCTIP 170

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256
             RG   S  L  V+  A +L + G  EI L G N+  +R       + TF DLL  L  
Sbjct: 171 LARGKSRSVPLETVLAGAVRLAEAGYREIVLTGVNIADYRS-----GRNTFVDLLLELES 225

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           +  + R+R ++  P  +SD LI        +MP+ HLP+QSGSD IL +M RR++A  YR
Sbjct: 226 VD-VSRIRISSIEPDILSDRLIDTVASSSKIMPHFHLPLQSGSDAILAAMRRRYSATGYR 284

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT--- 373
           + + +  S  P  A+ +D I G+PGET+ DF AT  L++ I  A    F  S R GT   
Sbjct: 285 ERLMKAVSAIPHCAVGADVITGYPGETESDFMATFRLLESIPAAYLHVFTCSLRPGTQLS 344

Query: 374 --PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKH---GKEKGKL 428
               S + + V   V  ER   L     ++Q  +    +G+ ++VL E+H     EKG +
Sbjct: 345 GQVSSGLRQSVSSAVSRERSRLLLDLAEKKQREYASCYLGKTLDVLFEEHRGVKGEKGTV 404

Query: 429 VGRSPWLQSVVLNSK-----NHNIGDIIKVRITDVKISTLY--GELVV 469
            G SP    V  +++        +G   +V I +     L   G  V 
Sbjct: 405 SGYSPNYLRVRCHTESSALATDIVGRERRV-IIENMNEDLILEGRFVT 451


>gi|66576257|gb|AAY51688.1| MiaB-like tRNA modifying enzyme [Chlorobium tepidum TLS]
          Length = 446

 Score =  306 bits (784), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 123/459 (26%), Positives = 202/459 (44%), Gaps = 26/459 (5%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           +  +     + GC++N  ++  + D   SQG++     D AD+++++TC +  +A  K  
Sbjct: 1   MKQKSVAAVTLGCKVNYAETSSIVDALVSQGWQLNAIDDGADVLIIHTCAVTGEAERKSR 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             + +I       I+      V V GC AQ + + I      V+ V+G    + +     
Sbjct: 61  QQIRKI-------IRNHPGSRVGVIGCYAQLDPKRIAD-IKGVSFVLGTTDKFEIAWYDG 112

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGY--NRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
            +           S  DK               K    AFL IQ+GC   C +C +P  R
Sbjct: 113 ESLPNDSEPLVKVSPVDKAITAHPACSMLSQPEKGRTRAFLKIQDGCSFGCAYCSIPLAR 172

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G   S SLS V+D A+K+ D G  EI L G N+    G   DG+    S LL  L  I  
Sbjct: 173 GRSRSVSLSTVLDRAQKIADAGYREIVLTGINI----GDYQDGD-TRLSGLLRRLETID- 226

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           + R+R ++  P+ + D LI        +MP+ HLP+QSGSD +L++M R +    YR+ +
Sbjct: 227 VSRIRISSVEPQLLDDELIDIVAASGKIMPHFHLPLQSGSDTVLRAMRRHYDTAFYRERL 286

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP----- 374
            +  S+    AI +D +VG+PGE++ DF      ++++  A    F  SPR GT      
Sbjct: 287 MKALSLIRGCAIGADVMVGYPGESERDFEEMCRFIEELPVAYLHVFTCSPRPGTKLFAEI 346

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG---KLVGR 431
               L ++     + R   L       +  F +A +G  ++VL E+     G   +  G 
Sbjct: 347 AEKKLIRIPSAESSSRAARLGVIGERIERRFAEAFIGSTLKVLFEEASALPGGAVRWSGY 406

Query: 432 SPWLQSVVLNSKNHNI-GDIIKVRITDVKIS-TLYGELV 468
           S     V +++    + G + +V I        L+G L+
Sbjct: 407 SEHYLRVSVDTSAGELRGQVREVIIDGFGEGLQLHGRLL 445


>gi|298675805|ref|YP_003727555.1| MiaB-like tRNA modifying enzyme [Methanohalobium evestigatum
           Z-7303]
 gi|298288793|gb|ADI74759.1| MiaB-like tRNA modifying enzyme [Methanohalobium evestigatum
           Z-7303]
          Length = 433

 Score =  306 bits (784), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 120/445 (26%), Positives = 200/445 (44%), Gaps = 18/445 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +  V +YGC  +   S  M D    QG+E V     AD++V NTC ++    +K+   +G
Sbjct: 2   KVHVATYGCPSSQAASEIMMDAIKRQGHELV-DEKSADVVVFNTCTVKYTTEQKILHKIG 60

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +             L VVV+GC+ + + ++IL  +   + ++G  +  R+ E+L+    
Sbjct: 61  ELGR---------KGLEVVVSGCMPEVQHDDILDNNQDAH-ILGVNSITRINEVLDSIEN 110

Query: 146 GKRVVDTDYSVEDKFERLS-IVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            K   ++   +E    R   I++    R         I +GC+  C +CVV   RG   S
Sbjct: 111 AKNKNNSGRRLEIFSSRPDDILNAPRTRFNQNIHICQISQGCNNRCAYCVVRTARGKLKS 170

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
             +  +V++ RK +  G  EI +  Q+ NA  G            LL  ++ I+G  ++R
Sbjct: 171 FDIDSIVEDVRKAVSEGCREIWITSQD-NAQYGIDRQ-NGVLLPQLLDRVASIEGNFKIR 228

Query: 265 YTTSHPRDMSDCLIKAHG--DLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
               +P  +   L       + + +  +LHLP+QS S+++L  MNR +T  E  +II + 
Sbjct: 229 VGMMNPFSVYPILDDLLKVYENNKIYKFLHLPIQSASEKVLGYMNRNYTMSEVDEIITKF 288

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           RS   D+ + +D IVGFPGET+DDF  ++D V      +    +Y+PR  T        +
Sbjct: 289 RSRFNDLTLVTDIIVGFPGETEDDFYKSIDWVKNYRPDKVNISRYTPRPHTKALEYRN-I 347

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
           D  +   R   L       ++      VG   +V + K  K KG ++ R+   + VV+  
Sbjct: 348 DSRIVVRRSNELHHVCDTVKLESKKEMVGWHGKVFVSKDAKYKG-VMARTESYKPVVIPE 406

Query: 443 KNHNIGDIIKVRITDVKISTLYGEL 467
            N   G    V ITD       G+L
Sbjct: 407 SNLPPGQWCDVEITDTTSGYFLGKL 431


>gi|126730999|ref|ZP_01746808.1| MiaB-like tRNA modifying enzyme [Sagittula stellata E-37]
 gi|126708715|gb|EBA07772.1| MiaB-like tRNA modifying enzyme [Sagittula stellata E-37]
          Length = 421

 Score =  306 bits (784), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 126/443 (28%), Positives = 204/443 (46%), Gaps = 37/443 (8%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
             + GC++N Y++  M+ +    G          D +++NTC +  +A  K    + R+R
Sbjct: 7   FTTLGCRLNAYETEAMKRLAADAGLT--------DAMIVNTCAVTSEAVAKARKEIRRLR 58

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA----- 143
                  ++  D  ++V GC AQ + +       + +V+   +     PE  +R      
Sbjct: 59  -------RDNPDAPLIVTGCAAQIDPDSFAAMDEVTHVIGNTEKMA--PETWQRLTPDFI 109

Query: 144 -RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
               + +V+   SVE+    L  +DG   R R   A++ +Q GCD  CTFC++PY RG  
Sbjct: 110 GDTPRVLVNDIMSVEETAGHL--IDGFGTRSR---AYVQVQNGCDHRCTFCIIPYGRGNS 164

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            S     VVD+ ++L+  G  E+ L G ++ +W G  L GE      +L  L  +  + R
Sbjct: 165 RSVPAGVVVDQIKRLVQEGYNEVVLTGVDLTSW-GADLPGEPRLGDLVLRIL-RLTDVPR 222

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LR ++    +  D L++A      LMP+LHL +Q G D ILK M RRH   +  +  +  
Sbjct: 223 LRISSIDSIEADDALMQAIATEPRLMPHLHLSLQHGHDLILKRMKRRHLRDDAIRFCEEA 282

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R++RPD+   +D I GFP ETD+ F A++ LV+  G      F YS R GTP + +  +V
Sbjct: 283 RALRPDMTFGADIIAGFPTETDEHFDASLRLVEDCGLTWLHVFPYSARPGTPAAKIPNRV 342

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
           D     ER   L+            A  G+  ++L+E         +GR+     V   +
Sbjct: 343 DGTTIRERAARLRAAGDAAVARHLAAQDGRTAQILMEAPD------MGRTEQFTEVTFAA 396

Query: 443 KNHNIGDIIKVRITDVKISTLYG 465
                G I+  RIT  + + L  
Sbjct: 397 PQPT-GRIVAARITGTEGARLTA 418


>gi|147919729|ref|YP_686525.1| putative 2-methylthioadenine synthetase [uncultured methanogenic
           archaeon RC-I]
 gi|110621921|emb|CAJ37199.1| putative 2-methylthioadenine synthetase [uncultured methanogenic
           archaeon RC-I]
          Length = 404

 Score =  306 bits (784), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 133/448 (29%), Positives = 205/448 (45%), Gaps = 46/448 (10%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           +  R ++++YGC  N  DS  + D   + G    +S ++AD+IV+NTC +    A  +  
Sbjct: 1   MTMRVYIETYGCTANEADSAGIRDAVLASGGAIASSPEEADVIVVNTCAVTGHTANSMLR 60

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            + R                V+VAGC+A AE   +      V+   GP +   +  L  R
Sbjct: 61  AVSRF-----------PGKRVLVAGCLAVAEPGRLKG-YEFVD---GPGSLPVVRALGLR 105

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
              G  +  T                      G TA + I EGC+  C++C+V   RG  
Sbjct: 106 PEAGLSIAMT----------------------GRTATIKIAEGCNGQCSYCIVRLVRGRI 143

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            S     +V+ AR+ I  G  E+ L  Q+  A+   GLD        L+ S++ + G  +
Sbjct: 144 RSTPAPDIVEAARRAIAEGASELFLTSQDSGAY---GLDTG-VRLPTLIRSIASLPGNFK 199

Query: 263 LRYTTSHPRDMSDCLIKAHG--DLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
           +R    +P  ++D L       +   +  + H+PVQSGSDRILK M R +T  EY  II 
Sbjct: 200 VRIGMMNPFSIADILPDMVDVLNHPKVYRFAHIPVQSGSDRILKLMQRPYTEQEYSAIIS 259

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           R+R+  P I  S+D+IVGFP ET+ DFR T++ +      +    ++SPR GTP + M +
Sbjct: 260 RLRAGVPGITFSTDYIVGFPTETEADFRLTLEDLRTNRPLKVNITRFSPRPGTPAAAMPD 319

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440
            V E  K ER   L     E         VG    VL+ + GK  G ++ R P    VV+
Sbjct: 320 -VLERTKKERSRMLTALHHEVTSHDLKEAVGSRRSVLVSEKGK-PGTVIARDPSYNMVVI 377

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
             ++  +G +  V I+  K + L G  +
Sbjct: 378 E-EDLPLGTVANVEISAAKTTYLIGRRI 404


>gi|299133084|ref|ZP_07026279.1| MiaB-like tRNA modifying enzyme [Afipia sp. 1NLS2]
 gi|298593221|gb|EFI53421.1| MiaB-like tRNA modifying enzyme [Afipia sp. 1NLS2]
          Length = 417

 Score =  306 bits (784), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 116/422 (27%), Positives = 187/422 (44%), Gaps = 32/422 (7%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
             + ++GC++N+ +S  M     + G +        D +++NTC +  +A  +    + R
Sbjct: 3   VELVTFGCRLNLAESETMRAEADAAGVQ--------DAVIVNTCAVTNEAVAQARQTIRR 54

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF- 145
           +R       ++     ++V GC AQ +   +    P V+ V+G     R     +  R  
Sbjct: 55  LR-------RDHPARKIIVTGCAAQTD-SRMFAEMPEVDRVLGNDDKMRAHAWRDTRRAF 106

Query: 146 ----GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
               G++V   D     +     +      + R   AF+ +Q GCD  CTFC++PY RG 
Sbjct: 107 DLDDGEKVAVADIMAVREMAPHLVEGFHSGQPR---AFVQVQNGCDHRCTFCIIPYGRGN 163

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
             S ++   V++ RKL++ G  EI L G ++ +  G  L G     + +   L  +  L 
Sbjct: 164 SRSVAMGAAVEQVRKLVEGGCPEIVLTGVDITS-YGADLPGAPKLGALVKQILKHVPELK 222

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           RLR ++    +    L+    D + LMP+LHL +Q+G D +LK M RRH+  +     D+
Sbjct: 223 RLRLSSIDSVEADRDLLDVIADDERLMPHLHLSLQAGDDLVLKRMKRRHSRADAIAFCDQ 282

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
            R +RPDIA  +D I GFP ETDD F  ++ LV+         F YS R GTP + M  Q
Sbjct: 283 ARRLRPDIAFGADLIAGFPTETDDMFERSLALVEDCDLTFLHVFPYSKRPGTPAAKMP-Q 341

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           V+     ER   L+               G+   VL+E          GR+     V + 
Sbjct: 342 VEGRTIRERAKRLRDAGEVALRRRLAREAGKTRHVLVEST------TQGRTEHFLPVAMT 395

Query: 442 SK 443
             
Sbjct: 396 GG 397


>gi|57239481|ref|YP_180617.1| hypothetical protein Erum7550 [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58579459|ref|YP_197671.1| hypothetical protein ERWE_CDS_07950 [Ehrlichia ruminantium str.
           Welgevonden]
 gi|57161560|emb|CAH58487.1| conserved hypothetical protein [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58418085|emb|CAI27289.1| Conserved hypothetical protein [Ehrlichia ruminantium str.
           Welgevonden]
          Length = 413

 Score =  306 bits (783), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 115/440 (26%), Positives = 204/440 (46%), Gaps = 32/440 (7%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V ++GC++N Y+S  +++             +  D+IV++TC +  +A  +V + + ++ 
Sbjct: 4   VITFGCRLNFYESEVIKNNLKKA--------ELDDVIVVHTCAVTSEAERQVKAKIRKLY 55

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
           N          ++ ++VAGC AQ    E     P V  V+G +   +    +        
Sbjct: 56  N-------NNANVKIIVAGCAAQLNP-ESYMSMPGVVKVLGNEDKLKYESYI-------- 99

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
             D          R  I D          A + IQ GC+  CTFCV+   RG   S  + 
Sbjct: 100 TADKVIVGNIGSSRKVIKDSIKQFPGKSRALIEIQNGCNHECTFCVITKARGNNRSLHIE 159

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
            ++ + +  ++NG  E+   G ++ +  G  + G++     +   L  I  L RLR ++ 
Sbjct: 160 DIITQVKDCVNNGYNEVVFTGVDI-SDFGIDIYGQRMLGVMIKRVLGAIPQLRRLRLSSI 218

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
              ++ D LI   G+    MP+LHL +QSG++ ILK M RRH   +  +  +R+  +R D
Sbjct: 219 DVAEIEDDLIDIIGNEPRFMPHLHLSLQSGNNLILKRMKRRHNREQVVEFCNRVSGMRKD 278

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           I   +D IVGFP ET+D F  T+ L+++   +    F YS R GTP + M  QV   V+ 
Sbjct: 279 IVFGADIIVGFPTETEDMFNDTVKLIEEANISYLHIFPYSAREGTPAARMP-QVSPEVRK 337

Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIG 448
            R   L +   ++  SF +  +     +++EK G      +GR+     V   S++  + 
Sbjct: 338 RRTKYLWEISEKRLKSFYNTLLHTRQSIVVEKSG------IGRAENFALVKFFSQDVQLQ 391

Query: 449 DIIKVRITDVKISTLYGELV 468
            +++V +  V+ + L  E++
Sbjct: 392 SVVEVMVKAVEGNYLIAEVL 411


>gi|146279012|ref|YP_001169171.1| MiaB-like tRNA modifying enzyme [Rhodobacter sphaeroides ATCC
           17025]
 gi|145557253|gb|ABP71866.1| MiaB-like tRNA modifying enzyme [Rhodobacter sphaeroides ATCC
           17025]
          Length = 425

 Score =  306 bits (783), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 124/444 (27%), Positives = 199/444 (44%), Gaps = 36/444 (8%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
             + GC++N Y++  M+++  + G   V++      +V+NTC +  +A  K    + R+R
Sbjct: 6   FSTLGCRLNAYETEAMKELASAAG---VDNA-----VVVNTCAVTAEAVRKAKQEIRRLR 57

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA----- 143
                  +E     ++V GC AQ E        P V+ V+G     +       A     
Sbjct: 58  -------RENPGATIIVTGCAAQTEPAT-FSAMPEVDRVIGNTEKMQASTWAAMAPDLIG 109

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
              +  VD   SV +    L     G+ R R   A++ +Q GCD  CTFC++PY RG   
Sbjct: 110 ETERVQVDDILSVRETAGHLI---DGFGRHR---AYVQVQNGCDHRCTFCIIPYGRGNSR 163

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           S     VV++ R+L+D G  E+ L G ++ +W G  L  +      ++  L  +  L RL
Sbjct: 164 SVPAGVVVEQIRRLVDRGFAEVVLTGVDLTSW-GADLPAQPRLGDLVMRILRLVPDLARL 222

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R ++    +  + L+ A      LMP+LHL +Q G D ILK M RRH   +  +  +  R
Sbjct: 223 RISSIDSIEADEALMGAIATEPRLMPHLHLSLQHGDDLILKRMKRRHLRDDAIRFCEEAR 282

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
            +RPDI   +D I GFP E++  F  ++ LV + G      F +SPR GTP + M  Q+ 
Sbjct: 283 RLRPDIVFGADIIAGFPTESEQAFENSLKLVGECGLTFLHVFPFSPRTGTPAARMP-QLA 341

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
             +  ER   L+     + ++  +A  G    VL E         +GR+     V   + 
Sbjct: 342 GPLIRERAARLRVLGDARLLAHLEAQRGLSHRVLTEGP------RMGRTEQFTEVAF-AA 394

Query: 444 NHNIGDIIKVRITDVKISTLYGEL 467
           +   G II   +T      L   +
Sbjct: 395 DLPEGRIISATVTGHAEGRLTATV 418


>gi|119383150|ref|YP_914206.1| MiaB-like tRNA modifying enzyme [Paracoccus denitrificans PD1222]
 gi|119372917|gb|ABL68510.1| MiaB-like tRNA modifying enzyme [Paracoccus denitrificans PD1222]
          Length = 420

 Score =  305 bits (782), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 123/440 (27%), Positives = 192/440 (43%), Gaps = 35/440 (7%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
             + GC++N Y++  M +M  + G +          +++NTC +  +A  K    + R+ 
Sbjct: 9   FATLGCRLNAYETEAMREMAEAAGLQGA--------VIVNTCAVTAEAVRKARQEIRRLA 60

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA----- 143
                  +E     V+V GC AQ E E     + +  V+   +          +A     
Sbjct: 61  -------RENPGAPVIVTGCAAQTEPETFAAMAEVSRVIGNHEKMQPATWAAMQAPDLIG 113

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
              K  VD   SV++    L     G+ R R   A++ +Q GCD  CTFC++PY RG   
Sbjct: 114 ETEKVQVDDIMSVKETAGHLI---DGFGRHR---AYVQVQNGCDHRCTFCIIPYGRGNSR 167

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           S     VVD+ ++L D G  E+ L G ++ +W G  L G+      ++  L  +  L RL
Sbjct: 168 SVPAGVVVDQIKRLRDRGFNEVVLTGVDLTSW-GADLPGQPRLGDLVMRILRLVPDLPRL 226

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R ++    +  + L+ A      LMP+LHL +Q+G D ILK M RRH   +  +  +  R
Sbjct: 227 RISSIDSIEADENLMLAIATEPRLMPHLHLSLQAGDDMILKRMKRRHLRDDAIRFCEEAR 286

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
            +RP IA  +D I GFP ET+  F  ++ LV+  G      F YS R GTP + M  +V 
Sbjct: 287 RLRPGIAFGADIIAGFPTETEAMFENSLKLVEDCGLTFLHVFPYSARKGTPAARMP-RVP 345

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
                ER   L+            A +G+   VL E         +GR+     V  +  
Sbjct: 346 GPAIKERAARLRAAGDAALARHLQAQLGEARMVLTEGP------RLGRTEHFTEVAFDRD 399

Query: 444 NHNIGDIIKVRITDVKISTL 463
               G ++ +RI       L
Sbjct: 400 MPE-GTLMALRIAGHDGQRL 418


>gi|296242700|ref|YP_003650187.1| RNA modification enzyme, MiaB family [Thermosphaera aggregans DSM
           11486]
 gi|296095284|gb|ADG91235.1| RNA modification enzyme, MiaB family [Thermosphaera aggregans DSM
           11486]
          Length = 427

 Score =  305 bits (782), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 114/446 (25%), Positives = 214/446 (47%), Gaps = 27/446 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R +V++YGC +N  D   M+ +   +G+  V++  +AD++++NTC +R    + + + + 
Sbjct: 2   RVYVETYGCALNRSDEALMKHVLIERGHTIVDNPSNADVVIINTCTVRLDTEQHMLNRIS 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +R L  +R        ++VAGC+  A+  ++ + +P  ++V  PQ   R+   +E    
Sbjct: 62  SLRELTQARK-----GKLIVAGCLPAAQPYKVAKTAPEASLV-SPQNSSRIYVAVE---S 112

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
             RVV  D   E     L              A + IQEGC   C+FC+  + R + +S 
Sbjct: 113 DGRVVMLDGVRERDRIGLCF--------ENKVAPIPIQEGCLSNCSFCITKHARRVLVSH 164

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           ++  +V      +  G  EI L G ++    G  L G++    +L+  +S + G  R+R 
Sbjct: 165 TVEAIVKSVETAVRMGAVEIQLTGMDLGT-YGMELYGKRY-LPELVRRVSTLPGEFRVRI 222

Query: 266 TTSHPRDMSD---CLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
              +P  +      L++A      +  +LH+P+QSGSD++LK+MNR++T  EYR +I  +
Sbjct: 223 GMINPEHLPPILDELLEAVKSDRRIYRFLHIPLQSGSDKVLKAMNRKYTVDEYRGLIKEV 282

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           +    D++I++D IVG P E ++DF  T+ ++ ++ + +     YS R  T  + M   +
Sbjct: 283 KQKISDVSIATDIIVGHPLEDEEDFEETLKIIRELEFERVHFAGYSVRPNTLSAGMPN-I 341

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL-N 441
              ++ ER+L + + + E      +  +G  + V I ++       VGR      V+L  
Sbjct: 342 PTRIRKERMLRMLETVEEVGFKVREKYIGLTLPVFITEYS---NTWVGRLDNYIPVILME 398

Query: 442 SKNHNIGDIIKVRITDVKISTLYGEL 467
             +   G  ++  I       L G +
Sbjct: 399 GDSLKYGITVETVIEKATFYDLRGRV 424


>gi|288572914|ref|ZP_06391271.1| MiaB-like tRNA modifying enzyme [Dethiosulfovibrio peptidovorans
           DSM 11002]
 gi|288568655|gb|EFC90212.1| MiaB-like tRNA modifying enzyme [Dethiosulfovibrio peptidovorans
           DSM 11002]
          Length = 432

 Score =  305 bits (782), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 132/443 (29%), Positives = 228/443 (51%), Gaps = 23/443 (5%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           +K+ GC+ N+Y++  +   F   G       +D D  VL +C +  +A  K    + R R
Sbjct: 8   IKALGCRTNLYEADAIASAFTRAGCRITE-GNDWDAAVLVSCSVTAEADRKSRQIVRRFR 66

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
                  +   + LVV  GC AQ    +  +    V+++VG +    +  L+     G  
Sbjct: 67  -------RASPEGLVVATGCWAQGISYDEAKAL-GVDLLVGNRRKDEVVPLVMETLRG-- 116

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVT--AFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
                + V +     S  +  +  +  +T  AFL +Q+GCD FC++C++P+ RG  +SR 
Sbjct: 117 --GVPHGVMETVATSSRWESLFLDRPSLTTRAFLKVQDGCDHFCSYCIIPFLRGKPVSRP 174

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
           L  +  E R ++++G  EI L G ++  +  +G  G     +DLL ++  I G+ R+R+ 
Sbjct: 175 LDDLEREVRSVVESGCPEIVLTGVHLGLYGREGGPG----LADLLRAVGAIDGVKRIRFG 230

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
           +  P  + D L+ A  +++   P+LHLP+QSG DR+L +M R HTA EY  ++DRI+S  
Sbjct: 231 SLEPFSVGDDLLDAMAEIESFCPHLHLPLQSGDDRVLNAMGRGHTADEYLSLLDRIKSAM 290

Query: 327 -PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
             D+ IS+D +VGFPGE D  F  T+ +++  G  +  SF YSPR GT  +++ ++  ++
Sbjct: 291 GEDVHISTDILVGFPGEDDLAFANTLSVLELGGIGRIHSFPYSPRKGTKAASLPDRPPKS 350

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445
           +  ER   + +K RE    +    VG+   +LIE+  +  G++ G +P    +       
Sbjct: 351 IAEERCKTVIEKGRELLDRYVSRWVGKEELLLIEEVSE--GRVSGYTPHFIRLSALGCGK 408

Query: 446 NIGDIIKVRITDVKISTLYGELV 468
             G I++ RI D+    L GE++
Sbjct: 409 VDG-IVRCRIADMVDGELRGEVI 430


>gi|218659687|ref|ZP_03515617.1| putative 2-methylthioadenine synthetase (miaB-like) protein
           [Rhizobium etli IE4771]
          Length = 277

 Score =  305 bits (782), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 194/276 (70%), Positives = 229/276 (82%)

Query: 66  VLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVN 125
           +LNTCHIREKAAEKVYS LGR+R +K  +  +G ++++ VAGCVAQAEGEEILRR+P V+
Sbjct: 1   LLNTCHIREKAAEKVYSALGRLREMKKKKAADGREMMIGVAGCVAQAEGEEILRRAPAVD 60

Query: 126 VVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEG 185
           VV+GPQTY+RLPE L RA+ G+RVVDT+Y++EDKFE L I +    R RGVTAFLT+QEG
Sbjct: 61  VVIGPQTYHRLPEALRRAKQGQRVVDTEYAIEDKFEHLPIAESRKIRARGVTAFLTVQEG 120

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           CDKFCTFCVVPYTRG E+SR ++Q+V+EA KL + GV EITLLGQNVNAW G G  GE  
Sbjct: 121 CDKFCTFCVVPYTRGSEVSRPVTQIVEEAEKLAEAGVREITLLGQNVNAWHGAGPRGEAW 180

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
           +  DLLY L+EI GL RLRYTTSHPRDM D LI+AH DL  LMPYLHLPVQSGSDRILK+
Sbjct: 181 SLGDLLYRLAEIPGLARLRYTTSHPRDMDDRLIEAHRDLRALMPYLHLPVQSGSDRILKA 240

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPG 341
           MNRRHTA EY  +I+RIR++RPDIA+S DFI GFPG
Sbjct: 241 MNRRHTAAEYLSLIERIRTIRPDIALSGDFITGFPG 276


>gi|159475142|ref|XP_001695682.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158275693|gb|EDP01469.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 435

 Score =  305 bits (781), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 109/447 (24%), Positives = 193/447 (43%), Gaps = 25/447 (5%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEKVYSFL 84
            +VK++GC  N+ DS  M       GY  V   +   ADL ++N+C ++  +   + + +
Sbjct: 9   VWVKTFGCSHNISDSEYMAGQLSDYGYRLVEDAERDAADLWLINSCTVKGPSQAGMSNLI 68

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
              +          G   VVVAGCV Q  G++ L     V+ V+G     R+ E +E   
Sbjct: 69  AAGKA---------GGKRVVVAGCVPQ--GDKKLPELQGVS-VLGVTQIDRVVEAVEETL 116

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G  V             L  +D    R+      + I  GC   CT+C   + RG   S
Sbjct: 117 RGNTVSMLAKKA------LPRLDLPKVRRNKHIEIVPISTGCLGACTYCKTKHARGHLGS 170

Query: 205 RSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
              + + +  R+   +  V EI L  ++  A  G+ +        D L ++    G   L
Sbjct: 171 YDPAALAERVRQAAADPWVREIWLSSEDTGA-YGRDIGSSLPELLDKLIAVLPPDGRTLL 229

Query: 264 RYTTSHPRDMSDCLIKAHG--DLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R   ++P  + + L           +  YLH+PVQS SD +L++M R +T  E+R++ID 
Sbjct: 230 RVGMTNPPYVLEHLEALCKALRHPCVFSYLHVPVQSASDAVLEAMKREYTVAEFRRVIDT 289

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           + +  P + +++D I  FPGE+ +D  AT++L+    +      ++ PR GTP + M  +
Sbjct: 290 LLAGVPGMELATDIITAFPGESPEDHAATLELLRTYRFPHTHISQFYPRPGTPAARMKNK 349

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           +   V  +R   L  ++           VG +   ++     +   LV  +     V+L 
Sbjct: 350 IPTQVSKQRSRELAAEVDSW-ADVYQHLVGTVQRAVVVDTAADGVSLVAHTRSYTQVLLE 408

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
            +   +G +++V I      ++ G +V
Sbjct: 409 PQPGLMGAVVEVAIDSASRWSVRGRVV 435


>gi|116328778|ref|YP_798498.1| 2-methylthioadenine synthetase [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|122283437|sp|Q04ZD0|RIMO_LEPBL RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|116121522|gb|ABJ79565.1| 2-methylthioadenine synthetase [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
          Length = 439

 Score =  305 bits (781), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 105/448 (23%), Positives = 203/448 (45%), Gaps = 19/448 (4%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + ++F++ + GC  N  DS+ M      +G+      +++D   +NTC   + A E+   
Sbjct: 1   MNKKFYITTLGCPKNTADSMSMHHSLLEEGFTPATFAEESDFHFINTCTFIQSATEETIQ 60

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +     +K           +VV GC A+   + I    P V++  G   Y +  ++L  
Sbjct: 61  TILSAAQVKKQ-----NHQKLVVVGCFAERYPDNISSEIPEVDLFFGTGRYAQAGKILRE 115

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
                     +++ +   ERL +     N  +   A++ + +GC++ C+FC++P  RG  
Sbjct: 116 KFPDLSPPKREFN-DSLLERLKLSSEIENYSKPY-AYVKVSDGCNRGCSFCIIPSFRGKF 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
               +  ++ +  + I  G  EI L+ Q+   + G+  +       D++  ++EI  L  
Sbjct: 174 RESPVEDILRDVDRAIRAGAKEICLVSQDT-VYYGRNSE----VLLDMVRKVAEIDSLEV 228

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LR    +P   ++ L++  G+   + PYL  P+Q  S +ILKSMNR   +  ++ +    
Sbjct: 229 LRLLYLYPDKKTEKLLRLMGETPKIAPYLESPLQHVSSKILKSMNRVGESSTFKDLFALA 288

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R V+P + I + FI+G+PGE   D    +  +++    +   F YSP+ GT G+ + + V
Sbjct: 289 REVKPGLEIRTSFIIGYPGEEPGDVDQVLRFIEETRPEKVNLFSYSPQEGTKGAELKQTV 348

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSV 438
            E  K+ R+  ++          +++ +GQ  + +++    E  + V R    +P +  V
Sbjct: 349 SEKEKSRRINLIRDVHLAILEEIHESRIGQTYDAIVD--SVENDQAVVRRFQDAPEMDEV 406

Query: 439 VLNSKNHNI-GDIIKVRITDVKISTLYG 465
           V       I G I K+RI       + G
Sbjct: 407 VYVDDISLIPGMIGKIRIDSFYEYDMNG 434


>gi|325108328|ref|YP_004269396.1| RNA modification enzyme, MiaB family [Planctomyces brasiliensis DSM
           5305]
 gi|324968596|gb|ADY59374.1| RNA modification enzyme, MiaB family [Planctomyces brasiliensis DSM
           5305]
          Length = 491

 Score =  305 bits (781), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 112/434 (25%), Positives = 194/434 (44%), Gaps = 32/434 (7%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +   + + GC++N Y++  + +     GY      + ADL V+NTC +      K    +
Sbjct: 66  KTCRMVTLGCKVNQYETQLVYEALRKNGYREARDGETADLCVVNTCTVTNTGDSKSRQVI 125

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            ++        ++      +V GC A  + +++    P V  VV       LP++LER  
Sbjct: 126 RQLA-------RKNPGTRTLVMGCYATRDPQQVAD-LPGVFEVV--TDKRELPDILERHG 175

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
                V   +                 RKR   A++ +Q+GC   CT+C++P  R    S
Sbjct: 176 IHDMPVGISH--------------FEGRKR---AYVKVQDGCILKCTYCIIPSVRPGLQS 218

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE----KCTFSDLLYSLSEIKGL 260
           RS  Q+ +E R+L+DNG  EI + G +V  +      G+          L   L +I G 
Sbjct: 219 RSPQQIEEEVRRLVDNGYREIVITGVHVGHYGVDTTRGKSGKPPFRLWHLFQKLDKIPGD 278

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R ++    +++D  I A  D + L P  H  +QSGS+ +L+ M RR++   + + ++
Sbjct: 279 WRMRLSSIEAVEINDDFISAAADCEHLCPQFHPALQSGSETVLRRMRRRYSMARFLEKLE 338

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
            +R    D A ++D IVGFPGET+++F  T+       + +   F YS R GT  ++  +
Sbjct: 339 NMRERLDDPAFTTDVIVGFPGETEEEFEETLQACRDARFMKTHVFPYSTRKGTKAADFAD 398

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSPWLQSVV 439
           Q    V   R+  L    R+    + ++ +G   +VL+E +     G + G       V 
Sbjct: 399 QCPPQVIKNRVQRLSDLERDLAERYYESRLGLPAKVLVEREISGRPGWVRGTDERYVPVE 458

Query: 440 LNSKNHNIGDIIKV 453
           L     +IG  + V
Sbjct: 459 LPGTADDIGRFVDV 472


>gi|303286521|ref|XP_003062550.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226456067|gb|EEH53369.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 542

 Score =  305 bits (781), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 114/465 (24%), Positives = 195/465 (41%), Gaps = 32/465 (6%)

Query: 13  MVSQIVDQCIVP--QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC 70
            +++     IVP   +  V+++GC  N+ DS  M     + GY    S +DADL V+NTC
Sbjct: 98  ALARPNAASIVPGRAKVHVRTFGCSHNISDSEFMAGQLSAYGYTLTTSPEDADLWVVNTC 157

Query: 71  HIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGP 130
            ++  +   + + + R +              +V+AGCV Q +      R      ++G 
Sbjct: 158 TVKNPSQSAMNTVIERGKAAGKK---------LVIAGCVPQGDKNA---RELDDLTLLGV 205

Query: 131 QTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190
               R+ E +ER   G  V             L  +D    R+      + +  GC   C
Sbjct: 206 TQIDRVVEAVERTLAGDAVRMLAKKT------LPALDLPKIRRNEHVEIVPLSTGCLGKC 259

Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDL 250
           T+C   + RG   S +   +V   +  I  GV EI L  ++  A  G  L  +       
Sbjct: 260 TYCKTKHARGELGSYAPEALVARVQTAIAEGVTEIWLSSEDTGA-YGIDLGTDVTRLLRD 318

Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGD---LDVLMPYLHLPVQSGSDRILKSMN 307
           + +     G   LR   ++P  +   L  A  +      +  +LH+PVQ+GSD +L  M 
Sbjct: 319 VTAALPKDGSCMLRLGMTNPPYILAHL-DAVAEAMHHPGVYAFLHIPVQAGSDAVLGRMK 377

Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           R +   ++ +++D +    P I I++D I GFPGET++D+  TM L  K  + +    ++
Sbjct: 378 REYVVADFEKVVDTLLERVPGITIATDIICGFPGETEEDWEMTMALCRKYDFIELHLSQF 437

Query: 368 SPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK 427
            PR GTP + M ++V+      R   L   +  +    + A VG    V +    K+   
Sbjct: 438 YPRPGTPAARM-KKVNSREVKRRSRELTNYI--ESYLPHGALVGTTQRVWVTDIAKDGIS 494

Query: 428 LVGRSPWLQSVVLNSKNH----NIGDIIKVRITDVKISTLYGELV 468
           LV  +     V+L          +G    V+I +     + GE++
Sbjct: 495 LVAHTKSYVQVLLPGGEAERARLMGKSAVVKIIESARWYVRGEVL 539


>gi|227872811|ref|ZP_03991125.1| 2-methylthioadenine synthase [Oribacterium sinus F0268]
 gi|227841338|gb|EEJ51654.1| 2-methylthioadenine synthase [Oribacterium sinus F0268]
          Length = 478

 Score =  305 bits (781), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 104/403 (25%), Positives = 203/403 (50%), Gaps = 25/403 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           RF + + GC++N Y++  M +    +G   V+  ++AD+ ++NTC +   A  K    + 
Sbjct: 9   RFAMHNLGCKVNSYETEAMTEAILQEGARLVDFTEEADIYLINTCSVTNIADRKSRQMIH 68

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           + +           + +V+  GC  + + EE+ +    +++++G     R+ EL++  R 
Sbjct: 69  QAKQ-------RNPEAIVIATGCYVEGKQEEL-KEDKGIDILIGNTGKGRVVELIKAYR- 119

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYN-----RKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
            + +++ D S  + F  +       N      K    AF+ +Q+GC++FC +C++PY RG
Sbjct: 120 -EAMLENDASPMEPFSPVREEGEYENLFLSKPKDKSRAFVKVQDGCNQFCAYCIIPYVRG 178

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG----------EKCTFSDL 250
              SR     ++E R L   G  E+ L G +++++     +                  L
Sbjct: 179 RIRSRKEEDCLEEIRHLAKEGFQEVVLTGIHLSSYGLDFENLSYEYASRKAETGEALLHL 238

Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
           +  + +I G+ R+R  +  PR +++  +    +++ + P+ HL +QSG+++ LK MNR +
Sbjct: 239 ISEVGKIPGIQRIRLGSLEPRIITERFLAGLKEVEAICPHFHLSLQSGAEKTLKEMNRHY 298

Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370
           T  ++++ ++ IR V P  AI++D IVGFPGE ++DF+ ++  + +I +     FK+S R
Sbjct: 299 TKEDFKKAVEDIRRVYPMAAITTDVIVGFPGEREEDFQESLAYLKEISFYDLHVFKFSRR 358

Query: 371 LGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQI 413
            GT    M EQ+ +N+K  R   L     E    F +  +G+ 
Sbjct: 359 KGTKADEMKEQIPDNIKTARSKELLALALEDSKKFREKFLGKE 401


>gi|152993771|ref|YP_001359492.1| tRNA modifying enzyme [Sulfurovum sp. NBC37-1]
 gi|238066610|sp|A6QCC6|RIMO_SULNB RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|151425632|dbj|BAF73135.1| tRNA modifying enzyme [Sulfurovum sp. NBC37-1]
          Length = 439

 Score =  305 bits (781), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 102/453 (22%), Positives = 206/453 (45%), Gaps = 30/453 (6%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++  + S GC  N+ DS  M        YE  +   +AD+I++NTC   + A E+  + +
Sbjct: 5   KKLHLISLGCTKNLVDSEVMLGRLKE--YEITDDNTEADVIIVNTCGFIDAAKEESINTV 62

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             + + +        D ++V++GC+++   EE+ +  P +++  G   Y ++ EL+   +
Sbjct: 63  LNLHDERKE------DSILVMSGCLSERYKEELQQDMPEIDIFTGVGDYEKIDELIASKQ 116

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
                    +S E      +   G         A++ I EGC++ C+FC +P  +G   S
Sbjct: 117 S-------TFSPEVYLA--TETSGRVITGSNYHAYIKIAEGCNQACSFCAIPSFKGKLHS 167

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           RSLS +  E R L + G  + + + Q+ ++  G+ +D  K    DL+  +  I+G+   R
Sbjct: 168 RSLSSIEKEVRMLAEQGYYDFSFISQD-SSSYGRDMDL-KDGLIDLIKVVEAIEGVRSAR 225

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
               +P   +  LI    D  +   Y  +P+Q   D +LK+M R     +  ++++ ++S
Sbjct: 226 ILYLYPSTTTFELIDTIADSKIFQTYYDMPIQHIDDAVLKTMKRGFGEQKTIELLEHMKS 285

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             P+  + +  I G PGE+   F      +++ G+ +  +F YS    T    M EQ+ +
Sbjct: 286 K-PNAFLRTSVIAGHPGESQRSFEKLCSFMEEFGFDRFNTFHYSNEETTTAYQM-EQIPQ 343

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGR----SPWLQSVV 439
           ++  ER   L +      +   +  VG+ +E++I+    E    L  R    +  +   +
Sbjct: 344 DIINERAEILGEIAERSTLRSLEKMVGKTVELVIDGESDEHEYLLSARPLQWAVDIDGEI 403

Query: 440 LNSKNHNI----GDIIKVRITDVKISTLYGELV 468
           L +   ++    G + + ++T++    L   L+
Sbjct: 404 LINDTSDLPVKYGKVYEAKVTELVGMQLLATLI 436


>gi|78355553|ref|YP_387002.1| hypothetical protein Dde_0506 [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|123727796|sp|Q315T9|RIMO_DESDG RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|78217958|gb|ABB37307.1| SSU ribosomal protein S12P methylthiotransferase [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 430

 Score =  304 bits (780), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 113/447 (25%), Positives = 185/447 (41%), Gaps = 30/447 (6%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
            +  S GC  N  D+  +  +   +    V  M DADL+++NTC     A E+    +  
Sbjct: 4   VYSISLGCPKNRVDTEWLLGVLGPE-VRPVREMADADLVLINTCGFIAPAVEESVRTVVE 62

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEG-EEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                    +     L+ VAGC+    G +++    P V++ +  +     PE++ RA  
Sbjct: 63  AVAELEDLPR---RPLLAVAGCLVGRYGRQDLAAELPEVDLWLTNRDMDAWPEMIGRALG 119

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                            + +            A+L + +GC   C+FC +P  RG  +S 
Sbjct: 120 ---------------VAVHVPPVRLLSTGPSYAYLKVSDGCGHNCSFCTIPSIRGGLVST 164

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
               +  EA  L+  GV E+  + Q+V A  G+ + G +     LL  L  + GL RLR 
Sbjct: 165 PADVLEAEAVNLLSRGVKELIFVAQDVAA-YGRDM-GLRHGLRSLLDRLLPLDGLERLRL 222

Query: 266 TTSHPRDMSDCLIKAHGDLDV-LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
              +P  +   L++   D     +PY  +PVQ     +L  M R   A   R+++DR+R 
Sbjct: 223 MYLYPAGLDAGLLRYLRDAGKPFVPYFDIPVQHAHPDVLSRMGRPF-ARNPREVVDRVRD 281

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           V P+ A+ +  IVGFPGET   +      V  + +     F Y    GTP + M  QVDE
Sbjct: 282 VFPEAALRTSIIVGFPGETQQHYDHLTRFVQDVRFMHLGVFAYRAEEGTPAAGMPGQVDE 341

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRS----PWLQSV- 438
             K  R   L +   E      +   G   +VL++  H +  G  VGR+    P +  V 
Sbjct: 342 VEKDWRRDALMEVQAEISEEILEGFTGSDEDVLVDAAHEEWPGLHVGRTWFQAPEIDGVT 401

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYG 465
            ++      G +++  I + +   L  
Sbjct: 402 YISGPGVKPGAMVRAEIVESRTYDLVA 428


>gi|24213088|ref|NP_710569.1| 2-methylthioadenine synthetase [Leptospira interrogans serovar Lai
           str. 56601]
 gi|45656240|ref|YP_000326.1| hypothetical protein LIC10336 [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|24193787|gb|AAN47587.1| 2-methylthioadenine synthetase [Leptospira interrogans serovar Lai
           str. 56601]
 gi|45599474|gb|AAS68963.1| conserved hypothetical protein [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 437

 Score =  304 bits (780), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 118/441 (26%), Positives = 216/441 (48%), Gaps = 26/441 (5%)

Query: 18  VDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA 77
           +   I  Q     + GC++N ++S  +       GY    S +  +++++NTC +  KA 
Sbjct: 1   MHSPIAEQTVLFNTLGCRLNFFESDGLFASLSKHGYRSAKSEEHPEVVIINTCTVTNKAD 60

Query: 78  EKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLP 137
            K  + +          IK+     + V GC A+ + E I    P V  VVG     +LP
Sbjct: 61  SKNRNTIRNA-------IKKFPGSQIWVTGCYAETDRESI-EAIPGVAGVVGNTEKSKLP 112

Query: 138 ELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197
            ++   R      +    + D+F    ++  G+ R     A+L IQ+GC++ C++C +P 
Sbjct: 113 AMILEKRGLIEESELVGKIFDRFSYSDVLPNGHTR-----AYLKIQDGCNRKCSYCKIPQ 167

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257
            RG+ +SR+   V+D+ R L DNGV EI L G N+  +R       K  F+ +L  +  I
Sbjct: 168 ARGLGVSRNYQDVLDQVRFLQDNGVGEIVLTGVNLGWYRDSE---NKKAFNKILGEILNI 224

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
               R+R ++  P D+ + L++         P+LH+P+QSG+  ILK M R +T   +R+
Sbjct: 225 LEYSRIRISSIEPPDVGNELVELM-THPRFTPFLHIPLQSGNSEILKKMKRTYTPETFRK 283

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
            ++  +   P++ + +D IVGFPGET++ F+ ++ ++  +G+A+  +F +S R  T    
Sbjct: 284 RVEIAKEKIPNLFLGTDIIVGFPGETEEMFQDSVSMIRDLGFAKIHTFPFSVRRNTLAET 343

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQS 437
             + V + +K ER+  L    RE    +  + + ++ E ++E+ G      +  +     
Sbjct: 344 FPDSVSKEIKKERVHTLNSLSRELHQKYALSEIEKVREAILEQGG------IAVTDNYLK 397

Query: 438 VVLNS---KNHNIGDIIKVRI 455
           V L+    KN  +G  + V++
Sbjct: 398 VKLSDTELKNLKVGQFLNVKL 418


>gi|291277351|ref|YP_003517123.1| putative MiaB-like tRNA modifying enzyme YliG [Helicobacter
           mustelae 12198]
 gi|290964545|emb|CBG40398.1| putative MiaB-like tRNA modifying enzyme YliG [Helicobacter
           mustelae 12198]
          Length = 438

 Score =  304 bits (780), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 102/457 (22%), Positives = 203/457 (44%), Gaps = 36/457 (7%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +   + S GC  N+ DS  M  +     Y+ ++    AD+I++NTC   + A E+    +
Sbjct: 2   KTLHLVSLGCTKNLVDSEVMLGVLKE--YKIIDDPSSADVIIINTCGFIQSAKEESIGMI 59

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            ++   K          L+V +GC+ Q   +E+  + P ++++ G   Y R+ E++E+ R
Sbjct: 60  LKMAQEKKE------GALIVASGCLTQRYQKELREQIPEIDIITGVGDYDRIDEMIEQRR 113

Query: 145 --FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
                RV   D   E                  + A++ I EGC++ C+FC +P  +G  
Sbjct: 114 GISSDRVFLADEKKERII-----------TGSRIHAYIKISEGCNQACSFCSIPSFKGKL 162

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SRS+  V+ E + L   G  + T + Q+ +++      G K     L+ ++ E      
Sbjct: 163 KSRSIESVLKEIQNLSQRGYQDFTFIAQDSSSYLRD--HGVKDGLVQLIGAIEEQGLARS 220

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
            R    +P   +  LI    D  +   Y  +P+Q    ++LK M R  +   + +++  +
Sbjct: 221 ARMLYLYPSTTTPHLIAVIRDSKIFQNYFDMPIQHIHAKMLKRMKRGVSKERHIELLHAM 280

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+  PD  + S  I+G PGE++++F      ++   + +   F +S   G+    M E++
Sbjct: 281 RA-VPDSFVRSTIIIGHPGESEEEFAELCSFLEDFVFDRLNVFAFSSEEGSAADLMEEKI 339

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGR----SPWLQS 437
              +  +R+  +++ L++QQ    ++ +G+  EVL+E            R    +P +  
Sbjct: 340 PTKIINQRIKKIEQILKKQQKRILNSMIGKQYEVLLEGKSAISEYFYSARALPWAPEVDG 399

Query: 438 VVLNSKNHN------IGDIIKVRITDVKISTLYGELV 468
            +L + +         G     +IT+V+   ++G +V
Sbjct: 400 EILINDSELDTLALDPG-YYLAQITEVRDGMIFGRVV 435


>gi|254446032|ref|ZP_05059508.1| RNA modification enzyme, MiaB family [Verrucomicrobiae bacterium
           DG1235]
 gi|198260340|gb|EDY84648.1| RNA modification enzyme, MiaB family [Verrucomicrobiae bacterium
           DG1235]
          Length = 427

 Score =  304 bits (780), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 112/446 (25%), Positives = 214/446 (47%), Gaps = 36/446 (8%)

Query: 36  MNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRI 95
           MN  ++L +E     +GY+ V   + ADL ++NTC +   A  K    + +        +
Sbjct: 1   MNQSETLLIEQGLQERGYDIVPFGEAADLGIINTCTVTNLADSKCRQTIRQF-------V 53

Query: 96  KEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYS 155
           ++  +    V GC +Q   +EI      V++++G Q    + + + + +  K V+  +  
Sbjct: 54  RKNPEAYTAVIGCYSQMGSKEIA-EIGGVDLIIGNQEKMSVIDYIGQEKNEKPVIVREKI 112

Query: 156 VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEAR 215
            ++ F   +  D  +N++    A L IQ+GC   C+FC++P+ RG   +R +  +++EAR
Sbjct: 113 SQEDFTIHNFGDIPFNQR----ANLKIQDGCSFVCSFCIIPFARGAARAREMGNLLEEAR 168

Query: 216 KLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSD 275
           +  + G+ EI + G N+  +     D +      +L  L+ ++G+ R+R ++  P  +  
Sbjct: 169 QKAEQGIREIVITGVNIGTY-----DTKGGGLLKVLEGLNAVEGIDRIRISSIEPTTIPT 223

Query: 276 CLIKAHGDLDV-LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSD 334
            L     D    L+P+ H+P+QSG D++LK M RR++  EY + +       P + + SD
Sbjct: 224 ELFGLMNDPQHALLPFFHIPLQSGCDKVLKEMRRRYSVGEYLEFLHLAHDNVPGLYVGSD 283

Query: 335 FIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCL 394
            +VGFPGET++DF+ T  +     +     F YS R GT  +   +QV+   +A R   L
Sbjct: 284 IMVGFPGETEEDFQETCRVFLDNPFDFCHVFSYSERKGTVAARREDQVEIPERARRSAYL 343

Query: 395 QKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDII--- 451
           ++   +++  F ++ +G+ + VL E    E       +     VV+      +G++    
Sbjct: 344 RRLSAKKRYDFYESYLGKEMRVLFENPKPES--WPSYTDNYIRVVVP----RLGELAAEQ 397

Query: 452 ---------KVRITDVKISTLYGELV 468
                    +VR+  +    + GEL+
Sbjct: 398 GMDLANRCGRVRLKKLAGDVVEGELL 423


>gi|302799254|ref|XP_002981386.1| hypothetical protein SELMODRAFT_52269 [Selaginella moellendorffii]
 gi|300150926|gb|EFJ17574.1| hypothetical protein SELMODRAFT_52269 [Selaginella moellendorffii]
          Length = 421

 Score =  304 bits (780), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 122/443 (27%), Positives = 201/443 (45%), Gaps = 24/443 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
             FVK++GC  N  DS  M     + GY+     D+ADL ++NTC ++  +   + + + 
Sbjct: 1   TIFVKTFGCAHNQSDSEYMAGQLLAYGYKISEDPDEADLWLINTCTVKAPSQSAMETLIR 60

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           + +            + +V+AGCV Q  G + L+    V+VV G Q   R+ E++E    
Sbjct: 61  KGKA---------QTIPLVIAGCVPQ--GSKDLKDLEGVSVV-GVQQIQRVVEVVEETLK 108

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G  V     S       L  +D    RK      + I  GC   CT+C   + RG   S 
Sbjct: 109 GHEVKLLRRST------LPSLDLPKVRKNKFVEIIPINVGCLGSCTYCKTKHARGHLGSY 162

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            +  +V   + ++  GV EI L  ++  A  G+ +  +  T    L +       V LR 
Sbjct: 163 KIEALVKRLQGVVSEGVTEIWLSSEDTGA-YGRDIGTDIPTLLHALVAELPRDRSVMLRI 221

Query: 266 TTSHPRDMSDCL--IKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
             ++P  +   L  I        +  +LH+PVQSGSD +L +M R +T  E++Q+ D + 
Sbjct: 222 GMTNPPYILQHLKEIAEILRHPCVYSFLHVPVQSGSDSVLAAMKREYTVAEFKQVADTLI 281

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
            + PDI I++D I GFPGET D+F  TM+L++   + Q    ++ PR GTP + M ++V 
Sbjct: 282 ELVPDIHIATDIICGFPGETSDEFDKTMELIEHYKFPQVHISQFYPRPGTPAARM-KRVP 340

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
                +R   L      +  +      G++  V +     +   LVG +     V+L S 
Sbjct: 341 TAEVKKRSRLLTNLF--ESFTPYSDMEGKVYRVWVTDTAADGIHLVGHTKSYVQVLLPSL 398

Query: 444 NHNIGDIIKVRITDVKISTLYGE 466
              +G  +  +IT V   ++  E
Sbjct: 399 PGLLGSNVNCKITSVGRWSVKAE 421


>gi|116331689|ref|YP_801407.1| 2-methylthioadenine synthetase [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
 gi|122280568|sp|Q04R21|RIMO_LEPBJ RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|116125378|gb|ABJ76649.1| 2-methylthioadenine synthetase [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
          Length = 439

 Score =  304 bits (780), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 104/448 (23%), Positives = 203/448 (45%), Gaps = 19/448 (4%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + ++F++ + GC  N  DS+ M      +G+      +++D   +NTC   + A E+   
Sbjct: 1   MNKKFYITTLGCPKNTADSMSMHHSLLEEGFTPATFAEESDFHFINTCTFIQSATEETIQ 60

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +     +K           +VV GC A+   + I    P V++  G   Y +  ++L  
Sbjct: 61  TILSAAQVKKQ-----NHQKLVVVGCFAERYPDNISSEIPEVDLFFGTGRYAQAGKILRE 115

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
                     +++ +   E+L +     N  +   A++ + +GC++ C+FC++P  RG  
Sbjct: 116 KFPDLSPPKREFN-DSLLEKLKLSSEIENYSKPY-AYVKVSDGCNRGCSFCIIPSFRGKF 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
               +  ++ +  + I  G  EI L+ Q+   + G+  +       D++  ++EI  L  
Sbjct: 174 RESPVEDILRDVDRAIRAGAKEICLVSQDT-VYYGRNSE----VLLDMVRKVAEIDSLEV 228

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LR    +P   ++ L++  G+   + PYL  P+Q  S +ILKSMNR   +  ++ +    
Sbjct: 229 LRLLYLYPDKKTEKLLRLMGETPKIAPYLESPLQHVSSKILKSMNRVGESSTFKDLFALA 288

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R V+P + I + FI+G+PGE   D    +  +++    +   F YSP+ GT G+ + + V
Sbjct: 289 REVKPGLEIRTSFIIGYPGEEPGDVDQVLRFIEETRPEKVNLFSYSPQEGTKGAELKQTV 348

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSV 438
            E  K+ R+  ++          +++ +GQ  + +++    E  + V R    +P +  V
Sbjct: 349 SEKEKSRRINLIRDVHLAILEEIHESRIGQTYDAIVD--SVENDQAVVRRFQDAPEMDEV 406

Query: 439 VLNSKNHNI-GDIIKVRITDVKISTLYG 465
           V       I G I K+RI       + G
Sbjct: 407 VYVDDISLIPGMIGKIRIDSFYEYDMNG 434


>gi|114605654|ref|XP_001171147.1| PREDICTED: CDK5 regulatory subunit associated protein 1-like 1
           isoform 2 [Pan troglodytes]
          Length = 509

 Score =  304 bits (779), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 105/417 (25%), Positives = 194/417 (46%), Gaps = 17/417 (4%)

Query: 53  YERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQA 112
           ++   +  DADL +LN+C ++  A +   + + + +              +V+AGCV QA
Sbjct: 22  HQVTENASDADLWLLNSCTVKNPAEDHFRNSIKKAQEENKK---------IVLAGCVPQA 72

Query: 113 EGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVED-KFERLSIVDGGYN 171
           +  +   +      ++G Q   R+ E++E    G  V       ++ +    + +D    
Sbjct: 73  QPRQDYLKG---LSIIGVQQIDRVVEVVEETIKGHSVRLLGQKKDNGRRLGGARLDLPKI 129

Query: 172 RKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQN 231
           RK  +   ++I  GC   CT+C   + RG   S  + ++VD A++    GVCEI L  ++
Sbjct: 130 RKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELVDRAKQSFQEGVCEIWLTSED 189

Query: 232 VNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL 291
             A  G+ +     T    L  +     ++RL  T           +    +   +  +L
Sbjct: 190 TGA-YGRDIGTNLPTLLWKLVEVIPEGAMLRLGMTNPPYILEHLEEMAKILNHPRVYAFL 248

Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351
           H+PVQS SD +L  M R +   ++++++D ++   P I I++D I GFPGETD DF+ T+
Sbjct: 249 HIPVQSASDSVLMEMKREYCVADFKRVVDFLKEKVPGITIATDIICGFPGETDQDFQETV 308

Query: 352 DLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVG 411
            LV++  +   F  ++ PR GTP + M EQV   VK +R   L +       S  D  +G
Sbjct: 309 KLVEEYKFPSLFINQFYPRPGTPAAKM-EQVPAQVKKQRTKDLSRVF--HSYSPYDHKIG 365

Query: 412 QIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           +  +VL+ +   +    V  + + + V++      +G +++V I +     + G+ V
Sbjct: 366 ERQQVLVTEESFDSKFYVAHNQFYEQVLVPKNPAFMGKMVEVDIYESGKHFMKGQPV 422


>gi|193213382|ref|YP_001999335.1| MiaB-like tRNA modifying enzyme [Chlorobaculum parvum NCIB 8327]
 gi|193086859|gb|ACF12135.1| MiaB-like tRNA modifying enzyme [Chlorobaculum parvum NCIB 8327]
          Length = 456

 Score =  304 bits (779), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 129/469 (27%), Positives = 213/469 (45%), Gaps = 31/469 (6%)

Query: 17  IVDQCIVPQR-FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREK 75
           + +   V Q+     + GC++N  ++  + DM  ++G++  +  D AD+I+++TC +  +
Sbjct: 1   MNNSSSVKQKSVAAVTLGCKVNYAETASIVDMLVAEGWQFHDIRDGADIILIHTCAVTGE 60

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135
           A  K    + +        IK+  +  VVVAGC AQ   E I  +   V++V+G    + 
Sbjct: 61  AERKSRQQIRKA-------IKKHPNAKVVVAGCYAQLAPEHIA-QIDGVSLVLGMAEKFD 112

Query: 136 LPELLERARFGKRVVDTDYSVEDKFERLSIVDG--GYNRKRGVTAFLTIQEGCDKFCTFC 193
               LE     +R V    S  +      +         K    AFL IQ+GC   C +C
Sbjct: 113 RSHYLEEPDRKERNVRVRVSPVEASSAAHVASSLIRQPEKGRTRAFLKIQDGCSFGCAYC 172

Query: 194 VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS 253
            +P  RG   S  L+ V++ A  + + G  EI L G N+ A    G  G    F+DLL  
Sbjct: 173 AIPLARGRSRSVPLATVMERAAAIAEAGYREIVLTGINI-ADYHDGQHG----FTDLLRH 227

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
           L E+  + R+R ++  P+ + D LI+       +MP+ HLP+QSGSD++LK+M R++   
Sbjct: 228 LEELD-VSRIRISSIEPQFLDDELIELVAGSTKIMPHFHLPLQSGSDKVLKAMGRQYDTA 286

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
            YR+ + R  S     AI +D +VG+PGE++ DF      ++++  A    F  S R GT
Sbjct: 287 LYRERLLRAVSSIRGCAIGADVMVGYPGESEQDFETMYRFIEELPVAYLHVFSCSVRPGT 346

Query: 374 P-----GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE---K 425
                     + +V     + R   L +  ++ +  F  + +G+ + VL E+ G +   K
Sbjct: 347 RLSREIAEKRVSRVVSAEASRRATRLAQLGQQLERRFASSFIGRQVRVLFEEGGADADGK 406

Query: 426 GKLVGRSPWLQSVVL-----NSKNHNIGDIIKVRITDVKISTLY-GELV 468
               G S     V +            G   +V I  V    L  G LV
Sbjct: 407 MLWSGYSENYLRVQVAIDDAAGGESMKGVEREVVIEGVGEGLLLQGRLV 455


>gi|150400142|ref|YP_001323909.1| MiaB-like tRNA modifying protein [Methanococcus vannielii SB]
 gi|150012845|gb|ABR55297.1| MiaB-like tRNA modifying enzyme [Methanococcus vannielii SB]
          Length = 421

 Score =  304 bits (778), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 116/446 (26%), Positives = 215/446 (48%), Gaps = 34/446 (7%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + +++ YGC +N  D+  +++     Q +E    ++D+D+IV+NTC +R++   ++ S +
Sbjct: 6   KIYIEGYGCTLNTADTEIIKNSIKEFQNFEITTDLNDSDIIVVNTCIVRQETEHRMISRI 65

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
              ++L            VVVAGC+A+A  ++I   S   + +V P+       +L +  
Sbjct: 66  EYFKSLNKK---------VVVAGCMAKALPKKIEYFS---DCMVLPREAQNSGNILFKKF 113

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
                   +   +  FE            +G+ + + I EGC   C++C+V   RG   S
Sbjct: 114 -------IENKEKTNFENNLSEKLNKLSSKGLISPMPISEGCLGNCSYCIVKKARGTLES 166

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
                +V +A + I++G   + +  Q+  A  G   +      S+L+  +SEI     +R
Sbjct: 167 YDRKLIVKKAMEFINSGTKCLLITAQDT-ACYGYDNNDN---LSNLIDDISEIPEKFAMR 222

Query: 265 YTTSHPRDMSDCLIKAHG--DLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
               H +     L +       + ++ +LHLP+QSG +++LK M R +T  E+  +++  
Sbjct: 223 IGMMHAKFAEPILDELVESFKSEKVVKFLHLPIQSGDNQVLKDMGRNYTVDEFISVLNEF 282

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           +    D+  ++D IVGFP ET+D F  T++++ KI        KYS R  T  + +L+QV
Sbjct: 283 KRKIKDLNFTTDVIVGFPSETEDAFNNTLEVLKKIKPDFTHGAKYSQRKYTKAA-LLKQV 341

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
           D  ++ ER   L +  R+     N   +GQ  E+L+ K+       +G +   ++V+   
Sbjct: 342 DTKIRKERSEILNELRRDLSYGNNKRHIGQTFEILVTKNN------MGVTENSKNVIFK- 394

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
            N  IG+  KV+I+D     L G+L+
Sbjct: 395 DNAKIGEFRKVKISDANTFGLLGKLL 420


>gi|224135639|ref|XP_002327268.1| predicted protein [Populus trichocarpa]
 gi|222835638|gb|EEE74073.1| predicted protein [Populus trichocarpa]
          Length = 612

 Score =  304 bits (778), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 118/433 (27%), Positives = 204/433 (47%), Gaps = 24/433 (5%)

Query: 38  VYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKE 97
             DS  M     S GY   +S ++ADL ++NTC ++  +   + + + + ++ K      
Sbjct: 57  QSDSEYMAGQLSSFGYSLSDSPEEADLWLINTCTVKSPSQSAMDTLISKGKSAKKP---- 112

Query: 98  GGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVE 157
                +VVAGCV Q  G   ++    V++V G Q   R+ E++E    G  V   +    
Sbjct: 113 -----LVVAGCVPQ--GSRNVKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLNRKT- 163

Query: 158 DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKL 217
                L  +D    RK      L I  GC   CT+C   + RG   S ++  +    + +
Sbjct: 164 -----LPALDLPKVRKNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVDSLAGRVKTV 218

Query: 218 IDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCL 277
           ID+GV EI L  ++  A  G+ +        + + +     G   LR   ++P  + + L
Sbjct: 219 IDDGVKEIWLSSEDTGA-YGRDIGVNLPILLNAIVAELPSDGSTMLRIGMTNPPFILEHL 277

Query: 278 --IKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDF 335
             I        +  +LH+PVQSGSD IL +MNR +T  E+R ++D +  + P + I++D 
Sbjct: 278 KEIAEVLRHPCVYSFLHVPVQSGSDAILTAMNREYTVNEFRTVVDTLTELVPGMQIATDI 337

Query: 336 IVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQ 395
           I GFPGETD DF  T++L+    +AQ    ++ PR GTP + M ++V  N+  +R   L 
Sbjct: 338 ICGFPGETDKDFSQTVNLIKAYKFAQVHISQFYPRPGTPAARM-KKVPSNIVKQRSRELT 396

Query: 396 KKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRI 455
                +  +  +   G++  + I     +   LVG +     V++ ++   +G    V+I
Sbjct: 397 SVF--EAFTPYNGMEGRVERIWITDIAADGIHLVGHTKAYVQVLIVAQESMLGTSAIVKI 454

Query: 456 TDVKISTLYGELV 468
           T V   +++GE++
Sbjct: 455 TSVGRWSVFGEVI 467


>gi|91773329|ref|YP_566021.1| MiaB-like tRNA modifying enzyme [Methanococcoides burtonii DSM
           6242]
 gi|91712344|gb|ABE52271.1| Radical SAM family protein with UPF0004 and MiaB-like domains
           [Methanococcoides burtonii DSM 6242]
          Length = 430

 Score =  304 bits (778), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 118/445 (26%), Positives = 195/445 (43%), Gaps = 19/445 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +  + +YGC  N   S  M       GYE V+ MD A+++V+NTC ++    +K+   + 
Sbjct: 2   KVHITTYGCSANQASSEIMIASVRDLGYELVDEMD-AEVVVINTCTVKYTTEQKILHKIE 60

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +             + VVV GC+ Q + E IL R+P  + ++G  +  ++ ++L     
Sbjct: 61  DL---------GAKGIDVVVTGCMPQVQLETILERNPDAH-ILGVNSIAKIGQVLRSIEN 110

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
             +V   +       E    +   ++R         I +GCD  C +C+V   RG   S 
Sbjct: 111 SCKVGSRERVELITSEPEGFLKTAHSRFNPNIHICQISQGCDYSCAYCIVTIARGKLRSF 170

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
               +V++ R  +D G  EI L  Q+ N   G   D       +LL  +  I G  ++R 
Sbjct: 171 DADSIVEDIRMAVDEGCREIWLTSQD-NGQYGTDRD---VLLPELLRRIVAIPGDFKIRV 226

Query: 266 TTSHPRDMSDCLIKAHG--DLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
              +P  ++  L         D +   +HLP+QS SD +LK MNR H+  E   I+ R+R
Sbjct: 227 GMMNPFSVTPILDDLIEVFRSDKIYKIVHLPIQSASDNVLKKMNRYHSIEEANGIVFRLR 286

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              PD+ + +D IVGF  E+D+DF  T++ V  +   +    +Y+PR  T        +D
Sbjct: 287 EAFPDLTLFTDIIVGFSSESDNDFNMTLEWVKTMKPDKVNISRYTPRPLTKALEYRN-LD 345

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
             +  ER   L K     ++      +G   EV I    K KG ++ R+   + VVL   
Sbjct: 346 TRIVVERSNKLHKLCDTIKLDSKKKMIGWKGEVFISMDAKVKG-VMARTASYKPVVLPEG 404

Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468
           + + G    V I D       G ++
Sbjct: 405 SVSPGTSCNVEIYDTTAGYFLGRVL 429


>gi|34558076|ref|NP_907891.1| 2-methylthioadenine synthetase [Wolinella succinogenes DSM 1740]
 gi|81637443|sp|Q9ZEN7|RIMO_WOLSU RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|3929906|emb|CAA10332.1| hypothetical protein [Wolinella succinogenes]
 gi|34483794|emb|CAE10791.1| conserved hypothetical protein-2-methylthioadenine synthetase
           [Wolinella succinogenes]
          Length = 439

 Score =  303 bits (777), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 109/454 (24%), Positives = 209/454 (46%), Gaps = 30/454 (6%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + ++  + S GC  N+ DS  M     S  YE    ++ AD+I++NTC   E A ++  S
Sbjct: 1   MSKKLHLISLGCTKNLVDSEVMLGRLKS--YEITPLIEKADVIIVNTCGFIEAAKQESLS 58

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            L           +     ++V +GC+++   EE+LR  P ++++ G   Y ++ +++ R
Sbjct: 59  VLFEALE------RRKKGAILVASGCLSERYHEELLREIPEIDIITGVGDYDKIDQMV-R 111

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            R G    +   + E+                 V A++ + EGC++ C+FC +P  +G  
Sbjct: 112 ERQGFHSGEVFLASEE--------QERVITGSSVHAYVKLSEGCNQTCSFCAIPQFKGKL 163

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR+L   + E + LI  G  + + + Q+ +++      GEK     L+ +L  ++G+  
Sbjct: 164 HSRTLESTLKEVKNLIAKGFTDFSFIAQDTSSYLRDR--GEKEGLIQLIGALDSLEGIKS 221

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
            R    +P   S  LI+A     V+  Y  +P+Q  ++ +LK M R     +++++++R+
Sbjct: 222 ARILYLYPSTASAKLIQAIQKSQVVQNYFDMPLQHIAESMLKRMKRGANQKKHKELLERM 281

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R   P   + +  I+G PGE++++F      +++  + +   F YS   GT    M  ++
Sbjct: 282 RQ-VPHSFVRTTLILGHPGESEEEFEELCRFLEEFRFDRVNLFAYSDEEGTSAHKMEGKL 340

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGR----SPWLQS 437
           D+ V   RL  L K +++Q  +     VGQ I V++E    + +     R    +P +  
Sbjct: 341 DKRVINARLKRLDKIIQKQHRALLKEMVGQEIPVILEGGSSEHEFFYSARDARWAPEIDG 400

Query: 438 VVLNSKNHN----IGDIIKVRITDVKISTLYGEL 467
            +L ++        G     +IT V    L   L
Sbjct: 401 EILINETLLPQPAPGHY-WAKITQVAGKQLLATL 433


>gi|192288683|ref|YP_001989288.1| MiaB-like tRNA modifying enzyme [Rhodopseudomonas palustris TIE-1]
 gi|192282432|gb|ACE98812.1| MiaB-like tRNA modifying enzyme [Rhodopseudomonas palustris TIE-1]
          Length = 423

 Score =  303 bits (777), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 128/450 (28%), Positives = 195/450 (43%), Gaps = 44/450 (9%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
             V ++GC++N ++S  +     S G         AD IV+N+C +  +A  +    + +
Sbjct: 3   VEVVTFGCRLNAFESELIRREAESAGL--------ADAIVVNSCAVTNEAVAQARQQIRK 54

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT------YYRLPELL 140
           ++       +   +  ++V GC AQ E       +  V+ V+G         ++     L
Sbjct: 55  LK-------RARPEARIIVTGCAAQTEPATFAAMA-EVDRVIGNDDKTRSDAWHAAKGAL 106

Query: 141 E-------RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC 193
           E              V D     E     L     G  R      F+ +Q GCD  CTFC
Sbjct: 107 EAGASFGLDTEQKIAVADIMAVREMAPHLLDGYQSGLPRV-----FVQVQNGCDHRCTFC 161

Query: 194 VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS 253
           ++PY RG   S  +  VV++ R L + G  EI L G ++ +  G  L G     + +   
Sbjct: 162 IIPYGRGNSRSVPVGAVVEQVRLLAERGHAEIVLTGVDLTS-YGADLPGAPKLGTLVKKV 220

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
           L  +  L RLR ++    +    LI A      LMP+LHL +Q+G D ILK M RRH   
Sbjct: 221 LRHVPELQRLRISSIDQVEADRDLIDALATEPRLMPHLHLSLQAGDDLILKRMKRRHARA 280

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
           +       +R  RPDIA+ +D I GFP ET++ F+ ++DLV++ G      F YSPR GT
Sbjct: 281 DAIAFCAEVRRRRPDIALGADLIAGFPTETEEMFQRSLDLVEECGLTFLHVFPYSPRPGT 340

Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSP 433
           P + M  Q+D  V  +R   L+           DA +G    VLIE          GR+ 
Sbjct: 341 PAARMP-QLDGRVIRDRAARLRAAGEAALQRRLDAEIGATRAVLIESP------TQGRTE 393

Query: 434 WLQSVVLNSKNHNIGDIIKVRITDVKISTL 463
               V ++      GD+  +RI     + L
Sbjct: 394 HFLPVAISG--ATPGDVQTLRIIRHDGARL 421


>gi|325967748|ref|YP_004243940.1| RNA modification enzyme, MiaB family [Vulcanisaeta moutnovskia
           768-28]
 gi|323706951|gb|ADY00438.1| RNA modification enzyme, MiaB family [Vulcanisaeta moutnovskia
           768-28]
          Length = 452

 Score =  303 bits (777), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 120/452 (26%), Positives = 204/452 (45%), Gaps = 29/452 (6%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           +  +F V ++GC +N  DS  +     S G+E    +  AD I++NTC +RE+A      
Sbjct: 1   MANKFTVITFGCWLNKADSDIVITRLRSLGWEYTEDIKSADTIIINTCAVREEAERNELK 60

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            L ++         E  +  ++V GC+ +     I   +P   +V          E ++ 
Sbjct: 61  LLRKLSE-------EYLNKRLIVTGCLTRVRPAMIKDAAPNAVLVTSHGA-----EFIDE 108

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR--- 199
              G+   +  Y  ED+   +  +   Y    G    + IQ GC   C+FCV    R   
Sbjct: 109 VVNGR---NDIYVYEDRP--MKYLPSYYPEFHGHRYVVPIQVGCLGNCSFCVTKVGRMGF 163

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G   S  +S + +     +  G  EI L GQ ++A  G+    +     +    L ++ G
Sbjct: 164 GKVRSYEMSDITNAVANAVSRGAREIYLTGQEISA-YGRDRGYDLADLLE--NILGKVDG 220

Query: 260 LVRLRYTTSHPRDMSD---CLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
              +R     P ++S     L+        +  + H+PVQSGSDRIL  M R+++   ++
Sbjct: 221 RFMIRLGMMEPLELSRVIDRLLDIVKSDWRVYRFFHIPVQSGSDRILTLMKRKYSVSLFK 280

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
            I+ RIR V PD  I +D IVGFPGETD+DF A++ L++++   +    +YS R  T  +
Sbjct: 281 DIVTRIRRVFPDATIVTDIIVGFPGETDEDFWASVRLIEELSIDKVNLARYSRRPFTEAA 340

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQ 436
            M EQV E +K ER     +   +  +  N   +G+ +  +  +        + RS   +
Sbjct: 341 YM-EQVPEQIKKERSKVATEIFNKVALERNKPFIGKEMWGITSEIDFRGENYIVRSYNYK 399

Query: 437 SVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            + +  K  +IG  +KV++ D     L G+L+
Sbjct: 400 PIAV--KKADIGAFVKVKVMDATSHRLLGQLL 429


>gi|261328871|emb|CBH11849.1| tRNA modification enzyme, putative [Trypanosoma brucei gambiense
           DAL972]
          Length = 535

 Score =  303 bits (777), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 109/447 (24%), Positives = 193/447 (43%), Gaps = 19/447 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
             FV ++GC  NV D   M       GY   +    AD  +LN+C ++  + E   S + 
Sbjct: 52  TIFVHTFGCGHNVSDGEYMAGQLVESGYNVTDEFGQADAYLLNSCTVKNPSEEHFVSMMN 111

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R+R+             ++VAGCV QA+     ++   V+VV G ++  R+  +++ A  
Sbjct: 112 RVRD---------TGKPLIVAGCVPQADPTN--KQWGDVSVV-GVRSIDRVSYVVQEALQ 159

Query: 146 GKRVV----DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           G  V       D    +    L  +D    R+      + I  GC   CT+C     RG 
Sbjct: 160 GNCVRLLGETEDQRQSNDSNELPALDLPKVRRNKYIEIIPISVGCLNNCTYCKTKQARGD 219

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
             S  +  +VD  R+++ +GV EI L  ++  A+              +   L     ++
Sbjct: 220 LRSYPVEVIVDRVREVVRDGVKEIRLTSEDSGAYGIDIGTDVVYLLQAVAVELEGTDVML 279

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+  +                    +  ++H+PVQSGSD IL++M R +T  E+   ID 
Sbjct: 280 RVGMSNPPYLLRHVDGFATVLKHPNVYEFVHIPVQSGSDSILQTMLREYTVEEFFMCIDS 339

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           IR+  P   +++D I  FPGE + +++ TM+L  +  +      ++ PR  TP + M +Q
Sbjct: 340 IRAAVPKATVATDIICAFPGEGESEWQETMELCKRAKFEVINITRFYPRRNTPAAAM-KQ 398

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           +  +V   R   L            D+ VG++  V + +   +K  LVG +     V+++
Sbjct: 399 IPTDVAKHRTTELTNFFN--SYRTFDSMVGEVHNVTLLETAHDKHHLVGHTKNYVQVLVD 456

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                +G+ + V IT     ++ G ++
Sbjct: 457 PAQARMGESVVVVITSATKYSVMGRVL 483


>gi|330506789|ref|YP_004383217.1| hypothetical protein MCON_0563 [Methanosaeta concilii GP-6]
 gi|328927597|gb|AEB67399.1| conserved hypothetical protein [Methanosaeta concilii GP-6]
          Length = 437

 Score =  303 bits (777), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 117/454 (25%), Positives = 216/454 (47%), Gaps = 36/454 (7%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           RF+++++GC  N  +S  + +     G+   + + +AD++++NTC + E+   K+   L 
Sbjct: 2   RFYIETFGCTSNFGNSQDLAEALREMGH-IPSGLKEADMVIVNTCAVTERTERKILRRLR 60

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRS----------PIVNVVVGPQTYYR 135
           ++               +VVAGC+A A  + I                   + G    + 
Sbjct: 61  QLE-----------GERLVVAGCLAAAIPQSIQTLCCRGRLGPLSQGDAARIAGLFDGWL 109

Query: 136 LPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTA-FLTIQEGCDKFCTFCV 194
           +P   +  + G+       S E   ER   V    +   G +   + + +GC+  C++C+
Sbjct: 110 MPS--QHMQSGQLQSQNFQSEEMLRERHIAVHLRESSPGGESCGIVNVADGCNGSCSYCI 167

Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL 254
           V   RG   SR +  VV    +L   G  EI +  Q+  A+ G  +       + LL +L
Sbjct: 168 VSKARGRLKSRPVEDVVLAVERLAQLGTAEIQISAQDTAAF-GSDI---GSDLAGLLETL 223

Query: 255 SEIKGLVRLRYTTSHP---RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
           +EI G   LR    +P   R + + LI+A      +  +LH+PVQSGSD IL+ M R +T
Sbjct: 224 TEIPGDFMLRVGMMNPDSARLIQNRLIEAF-QSPKIYRFLHIPVQSGSDEILQRMGRVYT 282

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
           + E+ +++   R   PDI+I +D IVGFPGETD DF  +M L++++   +    ++SPR 
Sbjct: 283 SDEFFELVSAFRFAYPDISIITDIIVGFPGETDKDFEESMSLIERLQPDKVNITRFSPRP 342

Query: 372 GTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR 431
           GT  +++ + + + +K +R   + +   E     N   +G+++  L+ + G++K  +  R
Sbjct: 343 GTSAASLYD-MPDRIKKDRSREMTRLWLEIAERRNRRYLGKVLHALVTECGRDK-TMKAR 400

Query: 432 SPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYG 465
           S     +V+     ++G   +++I +     L G
Sbjct: 401 SANYAGIVIPG-ALDLGRWCQIKIMETTPYYLSG 433


>gi|146337530|ref|YP_001202578.1| putative MiaB-like tRNA modifying enzyme [Bradyrhizobium sp.
           ORS278]
 gi|146190336|emb|CAL74332.1| putative MiaB-like tRNA modifying enzyme [Bradyrhizobium sp.
           ORS278]
          Length = 443

 Score =  303 bits (777), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 126/425 (29%), Positives = 193/425 (45%), Gaps = 31/425 (7%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
             V ++GC++N ++S  +     + G +        D IV+N+C +  +A  +    + +
Sbjct: 3   VDVVTFGCRLNAFESELIARHVEAAGAD--------DTIVINSCAVTNEAVAQARQSIRK 54

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG------PQTYYRLPELL 140
           ++       +E     +VV GC AQ + + +    P V+ V+G      P  +    ++L
Sbjct: 55  LK-------RERPYARIVVTGCAAQTQAD-MFAAMPEVDRVIGNDDKLRPDAWRATTQVL 106

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRG-VTAFLTIQEGCDKFCTFCVVPYTR 199
              RFG    +     +               +RG    F+ +Q GCD  CTFC++PY R
Sbjct: 107 AAPRFGIDATEKVAVSDIMAVTEMAPHLVDGFQRGLPRVFVQVQNGCDHRCTFCIIPYGR 166

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G   S  +  VVD+ R L + G  EI L G ++ +  G  L G       +   L  +  
Sbjct: 167 GNSRSVPMGAVVDQVRTLAERGHAEIVLTGVDLTS-YGADLPGTPKLGLLVKQILRHVPE 225

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           L RLR ++    +    L+ A  D   LMP+LHL +Q+G D ILK M RRH   +     
Sbjct: 226 LKRLRISSIDSIEADADLLDALADDARLMPHLHLSLQAGDDLILKRMKRRHVRADAIAFC 285

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
           D++R +RPDIA+ +D I GFP ET++ F  ++DLV+  G      F YSPR GTP + M 
Sbjct: 286 DQVRRLRPDIALGADLIAGFPTETEEMFTRSLDLVEACGLTLLHVFPYSPRPGTPAARMP 345

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV 439
            QVD  V  +R   L+           DA +G   EVLIE          GR+     V 
Sbjct: 346 -QVDGAVIRDRARRLRAVGEAALRRRLDAEIGCAREVLIESA------TQGRTEHYLPVS 398

Query: 440 LNSKN 444
           +    
Sbjct: 399 VTGAE 403


>gi|284992324|ref|YP_003410878.1| MiaB-like tRNA modifying enzyme YliG [Geodermatophilus obscurus DSM
           43160]
 gi|284065569|gb|ADB76507.1| MiaB-like tRNA modifying enzyme YliG [Geodermatophilus obscurus DSM
           43160]
          Length = 475

 Score =  303 bits (777), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 113/482 (23%), Positives = 192/482 (39%), Gaps = 41/482 (8%)

Query: 17  IVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA 76
           +       +   V + GC  N  DS  +     + GY  V   + AD +++NTC   E A
Sbjct: 1   MTPPTDPARTVAVVTLGCARNEVDSEELAGRLAAGGYRLVEDAEGADAVLVNTCGFIESA 60

Query: 77  AEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL 136
            +     +                  VV  GC+A+  G E+    P    V+G   Y  +
Sbjct: 61  KKDSVDAVLAA---------TDSGARVVAVGCMAERYGSELAGALPEAT-VLGFDDYTAI 110

Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVD----------------GGYNRKR---GVT 177
            + L+    G+ ++  D         +S VD                G   R+R   G +
Sbjct: 111 GDRLDDVLTGRPLIPHDPRDRRTLLPISPVDRSAAVTALDAPAIPGHGWLQRRRLASGPS 170

Query: 178 AFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG 237
           A L +  GCD+ C FC +P  RG  +SR  ++V+ EA+ L   GV E+ L+ +N  +  G
Sbjct: 171 AALKLASGCDRRCAFCAIPAFRGSFVSRPPAEVLGEAQWLASQGVTELVLVSENSTS-YG 229

Query: 238 KGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQS 297
           K L G+      LL  L+ ++G+ R+R     P ++   L++     D + PY  L  Q 
Sbjct: 230 KDL-GDLRHLERLLPQLAAVEGIARVRVAYLQPAELRPGLLEVIAATDGIAPYFDLSFQH 288

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
            S  +L+ M R     ++  +IDR R++ P     ++ I+GFPGET+DD       + + 
Sbjct: 289 SSPTLLRRMRRFGGTDDFLALIDRARALAPAAGFRTNVILGFPGETEDDVAELEHFLVEG 348

Query: 358 GYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVL 417
                  F YS   GT    +  ++D+     R+  +   + E      +  +G  +EVL
Sbjct: 349 RLDAVGVFGYSDEEGTEAMGLPGKLDQAEIDVRVRRITDLVEELTAQRAEDRLGDRVEVL 408

Query: 418 IEKHGKEK---GKLVGRSPWLQS-------VVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
           + +    +   G   G +            V         G ++   + D +   L    
Sbjct: 409 LTEDLSAEAGTGVWAGHAAHQDPEADGTTTVTGVPDGAVAGMLVAAEVVDTEGVDLVATA 468

Query: 468 VV 469
           +V
Sbjct: 469 LV 470


>gi|301111844|ref|XP_002905001.1| CDK5 regulatory subunit-associated protein 1 [Phytophthora
           infestans T30-4]
 gi|262095331|gb|EEY53383.1| CDK5 regulatory subunit-associated protein 1 [Phytophthora
           infestans T30-4]
          Length = 624

 Score =  303 bits (777), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 121/446 (27%), Positives = 203/446 (45%), Gaps = 29/446 (6%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
            ++K+YGC  NV DS  M+ +  S GY      D A L +LN+C +++ +         +
Sbjct: 63  IWIKTYGCSHNVSDSEYMQGVLASYGYRFTQDPDAAQLWLLNSCTVKDPS---------Q 113

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
              +  +      +  VVVAGCV QA+    L+    V++V G Q   R+ E++E    G
Sbjct: 114 AAFMHLAVKGRKQNKAVVVAGCVPQADRH--LKGLEEVSIV-GIQQVDRVVEVVEETLKG 170

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
             V     +      RL  +D    RK  +   + +  GC   CT+C   + RG   S +
Sbjct: 171 HTVRLLAKN------RLPELDLPKIRKNPMVEIIPLSTGCLGACTYCKTRHARGKLGSYT 224

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
              +V  A+ +I+ GV EI L  ++  A  G  +  +  T   L+  L E+     +   
Sbjct: 225 PEAIVSRAQTVINEGVTEIWLSSEDTGA-YGIDIGTDLPT---LMRKLLEVVPDGIMLRV 280

Query: 267 TSHPRDMSDCLIKAHGD---LDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
                      + A  +    + +  +LH+PVQSGSD +L +MNR +TA E+R++ D + 
Sbjct: 281 GMTNPPYILDHLDAIAEVLNHERVYSFLHVPVQSGSDDVLLAMNREYTAGEFRRVADELL 340

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           +  PD+ +++D I GFP ET++ F  TM+LVDK  +      ++ PR GTP + M ++V 
Sbjct: 341 AKVPDLTLATDIICGFPTETEEHFDETMELVDKYRFHIMNISQFYPRPGTPAAKM-KRVS 399

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKGKLVGRSPWLQSVVLNS 442
             +   R   L K    +        V   ++V +  +   +K   V  +     V+L  
Sbjct: 400 TQIVKNRSRKLTKLF--ETFEPYTRLVDTTLKVWVNTEVSDDKKYTVAHTKNYTKVLLPR 457

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
            +  IG   +VR+         GE++
Sbjct: 458 DDSLIGCTAEVRVLTAARFHATGEVI 483


>gi|268679076|ref|YP_003303507.1| MiaB-like tRNA modifying enzyme YliG [Sulfurospirillum deleyianum
           DSM 6946]
 gi|268617107|gb|ACZ11472.1| MiaB-like tRNA modifying enzyme YliG [Sulfurospirillum deleyianum
           DSM 6946]
          Length = 436

 Score =  303 bits (777), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 101/454 (22%), Positives = 201/454 (44%), Gaps = 30/454 (6%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++  + S GC  N+ DS  M     +  YE  +    AD++++NTC     A E+  + +
Sbjct: 2   KKLHLVSLGCNKNLVDSEVMLGKLRA--YELCDDASQADVLIVNTCGFIGPAKEESLNTI 59

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             +   +          L+V+AGC+++   E++ +    V++  G   Y ++ E++  A 
Sbjct: 60  FALHEARKK------GSLLVMAGCLSERYKEDLTKELKEVDLFTGVGDYDKIDEII--AL 111

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
              R   + Y + +        +          A++ + EGC++ C+FC +P  +G   S
Sbjct: 112 RQNRFTPSTYLMNE--------EERVITGSNAHAYVKLSEGCNQACSFCAIPGFKGKLHS 163

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R+L  ++ E + L+  G  + + + Q+ +++      GEK     L+ ++ +I+G+   R
Sbjct: 164 RTLESLIKEVKALVSKGFYDFSFISQDSSSYLRDM--GEKEGLIKLIDAVEKIEGIKSAR 221

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
               +P   S+ LI+      +   Y  +P+Q  SD +LK M R        + ++ +R 
Sbjct: 222 ILYLYPTTTSNALIERIIASPLCHNYFDMPIQHISDTMLKRMKRGAGRERIMEQLEMMRK 281

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             P+  I + FIVG P E+D +F   +    +  + +   F YS    T    M  ++D 
Sbjct: 282 A-PNSFIRTSFIVGHPEESDAEFEELLSFAKRFDFDRVNIFAYSDEEDTSAYEMHGKIDT 340

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG-R----SPWLQSVV 439
               +R+  L K ++ +     +  VG+ + +LIE    E    +G R    +P +   +
Sbjct: 341 KTINKRIKQLDKIVQAKTKQSFEKEVGKEVLILIEGESSEHELFMGARELLWAPGIDGEI 400

Query: 440 LNSK----NHNIGDIIKVRITDVKISTLYGELVV 469
           L +     N +IG   + +IT++    L   +  
Sbjct: 401 LVNDSEVENVSIGASYRAKITELVGDKLVATITA 434


>gi|118475302|ref|YP_892512.1| hypothetical protein CFF8240_1371 [Campylobacter fetus subsp. fetus
           82-40]
 gi|238065315|sp|A0RQM9|RIMO_CAMFF RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|118414528|gb|ABK82948.1| conserved hypothetical protein [Campylobacter fetus subsp. fetus
           82-40]
          Length = 436

 Score =  303 bits (776), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 102/451 (22%), Positives = 205/451 (45%), Gaps = 30/451 (6%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
            ++ S GC  N+ DS  M     S  Y  V+  ++AD++++NTC   E A E+    +  
Sbjct: 4   LYLVSLGCNKNLVDSEIMLGRLSS--YNIVDKPNNADVMIVNTCGFIESAKEESVRTILE 61

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           + + K        + ++VV GC+ Q   +E+++  P V++  G   Y  + E++ +    
Sbjct: 62  LASYKKE------NSVLVVTGCLMQRYRDELMKELPEVDIFTGVGDYASIDEMILK---- 111

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           K+ + +      K +   ++ G         A++ I EGC++ C+FC +P  +G   SR 
Sbjct: 112 KQNLFSPGVYLQKSDTKRVITG-----SSYHAYIKIAEGCNQKCSFCAIPTFKGKLKSRD 166

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
           ++ ++ E ++L  +G  + + + Q+ +++      G       L+  + +I+ +   R  
Sbjct: 167 INSIIKEVKELTKDGYSDFSFIAQDTSSFLRDA--GINDGLIKLIDEVEKIEAVKSARIL 224

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
             +P   S  LI         + Y  +P+Q  +D +LK M R  +    ++++ ++R V 
Sbjct: 225 YLYPTTASMGLIDKIIASPKFVNYFDMPIQHINDDMLKIMRRGSSKERLKELLTKMR-VA 283

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           P   + +  I+G PGET + F    D + +  + +  +F YS   GT    M EQ+    
Sbjct: 284 PKSFLRTGIIIGHPGETGERFDELCDFLTEFKFDRISAFAYSKEEGTLAYEM-EQIPSKT 342

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG-----RSPWLQSVVLN 441
             +RL  ++K +++Q      + VG++I+V I     E     G         +   +L 
Sbjct: 343 ITKRLNTIEKIIKKQIEGSFKSLVGEVIKVQINGSSSEGEMFFGAKSIIWDREIDGEILI 402

Query: 442 SK----NHNIGDIIKVRITDVKISTLYGELV 468
           +     +  +G+I   +I +     L GE++
Sbjct: 403 NDTQIKDPKVGEIYDCKINEFVKDKLIGEII 433


>gi|313226156|emb|CBY21299.1| unnamed protein product [Oikopleura dioica]
          Length = 1581

 Score =  303 bits (776), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 111/466 (23%), Positives = 204/466 (43%), Gaps = 27/466 (5%)

Query: 11  AHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD---DADLIVL 67
           A    Q        Q+ +V+++GC  N  DS  M       GY+         + DL +L
Sbjct: 37  AGSQIQADSSFARGQKIYVRTWGCTHNTSDSEYMAGQLAEAGYDVKLDDAKRLECDLWLL 96

Query: 68  NTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVV 127
           N+C ++  A +   + +   + +         ++ VVVAGCV Q    +   +       
Sbjct: 97  NSCTVKAPAEDHFKNAINAAQKV---------NIPVVVAGCVPQGAPSDKFVKG---LST 144

Query: 128 VGPQTYYRLPELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGC 186
           +G Q   R+ E++E    G  V +        K    + +     R+  +   ++I  GC
Sbjct: 145 IGVQQIDRVVEVVEETLKGNTVKLLGPKKRAGKRIGGADLGLPKVRRNALIEIISINTGC 204

Query: 187 DKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT 246
              CT+C   + RG   S  + ++V    +  + G+ E+ L  ++  A  G+ +      
Sbjct: 205 LNSCTYCKTKHARGDLASYPIDEIVARFEQAFEQGIVEVWLTSEDTGA-YGRDI---GTN 260

Query: 247 FSDLLYSLSE-IKGLVRLRYTTSHPRDMSDCL--IKAHGDLDVLMPYLHLPVQSGSDRIL 303
             +LL ++ + I     +R   ++P  + + L  I    +   +  +LH+PVQSGSD +L
Sbjct: 261 IVELLNAVVKTIPEGCMMRIGMTNPPYILEHLEGIAKILNHPRVYSFLHVPVQSGSDAVL 320

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
            SM R +   ++ +++D +R+  PD  I++D I GFP ET++DF  T+ L +K  +   F
Sbjct: 321 NSMRREYNREDFCKVVDTLRANVPDCNIATDIIAGFPTETEEDFDETISLCEKYKFPSLF 380

Query: 364 SFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK 423
             ++ PR GTP +   EQ+   V  ER   L      +     +   G+   VLI +   
Sbjct: 381 MNQFFPRPGTPAAKW-EQIPRQVIKERTKKLSNVF--KSYLPFEGREGERHSVLITEMAH 437

Query: 424 EKGKLVGRSPWLQSVVLNS-KNHNIGDIIKVRITDVKISTLYGELV 468
           +K  LVG +     +++    +  +G  + V +      ++ G +V
Sbjct: 438 DKVSLVGHTKSYHQILVKGNPDELMGKRVDVVVYQTTKHSMLGRIV 483


>gi|302671973|ref|YP_003831933.1| MiaB-like tRNA modifying enzyme [Butyrivibrio proteoclasticus B316]
 gi|302396446|gb|ADL35351.1| MiaB-like tRNA modifying enzyme [Butyrivibrio proteoclasticus B316]
          Length = 454

 Score =  303 bits (776), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 121/426 (28%), Positives = 216/426 (50%), Gaps = 30/426 (7%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R  + + GC++N Y+   M       G   V   + AD+ ++NTC +   A  K    L 
Sbjct: 13  RVAMHNLGCKVNSYEMDVMSIRLKEAGCIIVPFTEKADIYIINTCTVTNIADRKSRQMLH 72

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL----- 140
           + +       KE  D +VV  GC  +   + + ++   V++ VG      + ++L     
Sbjct: 73  KAK-------KENPDSIVVAVGCYVETGIDGV-KKDDCVDLAVGNNKKSEIVDILNTFLE 124

Query: 141 ------ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCV 194
                 ++   G  ++D +++ E +  +LS +           A++ IQ+GC++FC++CV
Sbjct: 125 ARGEYDDKTLGGNSIIDINHTNEYENMQLSEMPEH------TRAYIKIQDGCNQFCSYCV 178

Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL 254
           +PY RG   SR +S+++ E   L+  G  E+ L G ++ ++   GLD  +    DL+  +
Sbjct: 179 IPYARGRVRSREMSEILTEIEGLVQKGCKEVVLTGIHIGSY---GLDKGEPMLVDLVEKI 235

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
           ++I G+ R+R  +  PR ++    +    +D L P+ HL +QSG D +LK MNR +TA E
Sbjct: 236 ADISGIDRIRLGSIEPRLITAENTRRLAAIDKLCPHFHLSLQSGCDTVLKRMNRHYTASE 295

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
           + + +  +R      AI++D IVGFPGET+++F      V+KI + +   FKYSPR GT 
Sbjct: 296 FEESVRLLREAFDRPAITTDVIVGFPGETEEEFEECRAFVEKIDFYEMHVFKYSPRKGTV 355

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG--KLVGRS 432
            + M EQ+ +  K  R   L K  +EQ   + ++ +G+ ++VL E   +  G   ++G +
Sbjct: 356 AAGMKEQLTDREKTVRSDVLLKLTKEQSKLYRESFIGEKVDVLWEDSEEINGKKYMIGHT 415

Query: 433 PWLQSV 438
                +
Sbjct: 416 DRYVRI 421


>gi|94495525|ref|ZP_01302105.1| hypothetical protein SKA58_05735 [Sphingomonas sp. SKA58]
 gi|94424913|gb|EAT09934.1| hypothetical protein SKA58_05735 [Sphingomonas sp. SKA58]
          Length = 441

 Score =  303 bits (776), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 128/459 (27%), Positives = 201/459 (43%), Gaps = 47/459 (10%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           + + GC++N+ +S  +  M          + +  DLIV+N+C +  +A  +    + R R
Sbjct: 6   IITMGCRLNIAESEAIRQM----------AAEQDDLIVVNSCAVTAEAVRQTRQAIRRAR 55

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-------- 140
                  +E  D  ++V GC AQ E +     +  V+ V+G +        L        
Sbjct: 56  -------RERPDARILVTGCAAQTEPQTFAAMA-EVDAVIGNREKMEAATYLPPFVSSEV 107

Query: 141 ERARFGKRVVDTDYSVEDKFE-------------RLSIVDGGYNRKRGVTAFLTIQEGCD 187
           E+         T       FE             R +             AFL +Q GCD
Sbjct: 108 EKRLAHPDRFSTSLETNGPFEQSAKVRVADIMSVRDTAPHMASAFADHARAFLEVQNGCD 167

Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTF 247
             CTFC++PY RG   S     VVD+AR+L+D G  EI L G +V +  G  L G     
Sbjct: 168 HRCTFCIIPYGRGNSRSVPAGAVVDKARELVDAGYREIVLTGVDVTS-YGPDLPGAPTLG 226

Query: 248 SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307
             +   L  +  L RLR ++    +M D L         +MP++HL +Q+G D ILK M 
Sbjct: 227 LLVERILKGVPDLPRLRLSSIDSVEMDDRLFDLIAHEPRMMPHVHLSLQAGDDMILKRMK 286

Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           RRH+  +  +I++R+++ RPDI+I +D I GFP E D  F  ++ L+D         F Y
Sbjct: 287 RRHSRADAVRIVERLKAARPDISIGADIIAGFPTEDDAMFTRSLALIDDCAIVHGHIFPY 346

Query: 368 SPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK 427
           SPR GTP + M  QVD      R   L+     ++ ++  + +G    VL+E+ G     
Sbjct: 347 SPREGTPAARMP-QVDRPTIKARAARLRAACANRRDAWLRSLIGTQQSVLVERSG----- 400

Query: 428 LVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGE 466
           L G +     V   +       I++  IT ++   L  +
Sbjct: 401 LSGHAENFAPVRFTATQ-TPSAIVRATITGLEKGVLIAQ 438


>gi|228469810|ref|ZP_04054768.1| conserved hypothetical protein [Porphyromonas uenonis 60-3]
 gi|228308649|gb|EEK17400.1| conserved hypothetical protein [Porphyromonas uenonis 60-3]
          Length = 449

 Score =  303 bits (776), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 106/435 (24%), Positives = 191/435 (43%), Gaps = 19/435 (4%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDD------ADLIVLNTCHIREK 75
           +V +R    + GC++N  ++  +     + G ER++           D+ ++N+C + + 
Sbjct: 9   LVGKRAAFYTLGCRLNYAETSTIARQLATVGVERISDEHHHTTEVLPDICIVNSCSVTDT 68

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135
           A +K  S + R+        +E  + L+VV GC AQ +GE+I  + P V++VVG      
Sbjct: 69  ADKKCRSLINRLH-------REYPEALIVVTGCYAQLQGEQIA-QMPGVDLVVGSGRKSE 120

Query: 136 LPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
           +  LL      +               L   +   +       FL +Q+GC+ +CT+C +
Sbjct: 121 IVALLTELCQKRTQPKAATPHVTARRELQHFEPSVSSDDRTRHFLKVQDGCNYYCTYCTI 180

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
           P  RG+  + S++ +V +A ++ + G  EI L G N+    G        T  +LL+ L+
Sbjct: 181 PAARGVSRNGSIASLVAQAERVAELGGREIILTGVNI----GDFGRSTGETLLELLHRLT 236

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
           ++ G+ R R  +  P  ++  +I+   +    MP+ H+P+QSGSD +L+ M R +    +
Sbjct: 237 QVAGIARYRIGSIEPELLTPEIIQFVAETAQFMPHFHIPLQSGSDHVLRLMRRHYDTELF 296

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
            + +  I  + PD  +  D I G  GE  +    T+  +    ++Q   F YS R GT  
Sbjct: 297 AERLKLIYELIPDAFVGIDVIAGMRGELPEHHAETLAFLKTQPWSQLHVFPYSERKGTKA 356

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWL 435
             +   V    K  R   L     E+  +F     G +  VL E+  +    + G +   
Sbjct: 357 LEIKPAVPATEKKLRTKELLALSSERHNAFCAPFAGSVRPVLWEET-RHGEMMEGFTDNY 415

Query: 436 QSVVLNSKNHNIGDI 450
             V        +G I
Sbjct: 416 IRVTQPYDPELVGAI 430


>gi|302772983|ref|XP_002969909.1| hypothetical protein SELMODRAFT_31574 [Selaginella moellendorffii]
 gi|300162420|gb|EFJ29033.1| hypothetical protein SELMODRAFT_31574 [Selaginella moellendorffii]
          Length = 421

 Score =  303 bits (776), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 121/443 (27%), Positives = 202/443 (45%), Gaps = 24/443 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
             F+K++GC  N  DS  M     + GY+     D+ADL ++NTC ++  +   + + + 
Sbjct: 1   TIFLKTFGCAHNQSDSEYMAGQLLAYGYKISEDPDEADLWLINTCTVKAPSQSAMETLIR 60

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           + +            + +V+AGCV Q  G + L+    V+VV G Q   R+ E++E    
Sbjct: 61  KGKA---------QTIPLVIAGCVPQ--GSKDLKDLEGVSVV-GVQQIQRVVEVVEETLK 108

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G  V     S       L  +D    RK      + I  GC   CT+C   + RG   S 
Sbjct: 109 GHEVKLLRRST------LPSLDLPKVRKNKFVEIIPINVGCLGSCTYCKTKHARGHLGSY 162

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            +  +V   + ++  GV EI L  ++  A  G+ +  +  T    L +       V LR 
Sbjct: 163 KIEALVKRLQGVVSEGVTEIWLSSEDTGA-YGRDIGSDIPTLLRALVAELPRDRSVMLRI 221

Query: 266 TTSHPRDMSDCL--IKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
             ++P  +   L  I        +  +LH+PVQSGSD +L++M R +T  E++Q+ D + 
Sbjct: 222 GMTNPPYILQHLKEIAEILRHPCVYSFLHVPVQSGSDSVLEAMKREYTVAEFKQVADTLI 281

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
            + PDI I++D I GFPGET D+F  TM+L++   + Q    ++ PR GTP + M ++V 
Sbjct: 282 ELVPDIHIATDIICGFPGETSDEFDKTMELIEHYKFPQVHISQFYPRPGTPAARM-KRVP 340

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
                +R   L      +  +      G++  V +     +   LVG +     V+L S 
Sbjct: 341 TAEVKKRSRLLTSLF--ESFTPYSDMEGKVYRVWVTDTAADGIHLVGHTKSYVQVLLPSL 398

Query: 444 NHNIGDIIKVRITDVKISTLYGE 466
              +G  +  +IT V   ++  E
Sbjct: 399 PGLLGSNVNCKITSVGRWSVKAE 421


>gi|296532248|ref|ZP_06894992.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Roseomonas cervicalis
           ATCC 49957]
 gi|296267418|gb|EFH13299.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Roseomonas cervicalis
           ATCC 49957]
          Length = 451

 Score =  303 bits (776), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 120/444 (27%), Positives = 193/444 (43%), Gaps = 36/444 (8%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V S+GC++N Y+S  M  +    G+         D +++NTC +  +A  +    + R  
Sbjct: 38  VLSFGCRLNTYESTAMRALALRAGHR--------DAVLVNTCAVTAEAERQARKAIRRAH 89

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
                  +E   + ++V GC AQ    E     P V  V+G     +             
Sbjct: 90  -------REQPGVPILVTGCAAQISP-ESWAALPGVARVIGNADKLKPEAW--APEASPA 139

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
            V    +  +    L     G  R     AF+ +Q+GCD  CTFCV+PY RG   S  + 
Sbjct: 140 PVTDIMAATETAAHLVTDFAGRAR-----AFVQVQQGCDHRCTFCVIPYGRGPSRSVPMG 194

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
            VV++AR L+  G  E+ L G ++ +  G  L G           L+ +  L RLR ++ 
Sbjct: 195 AVVEQARALVARGYNELVLTGVDITS-YGPDLPGRPTLGQLARRLLALLPELQRLRLSSL 253

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
            P ++ + L +       LMP+LHL +Q G D +LK M RRH+  +      R R +RP 
Sbjct: 254 DPVEIDEDLWRLIAGEPRLMPHLHLSLQHGDDVMLKRMKRRHSRADALACARRARDLRPG 313

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           IA  +D I GFP ET+  F   ++LV++ G      F YS R GTP + M  Q+   ++ 
Sbjct: 314 IAFGADLIAGFPTETEAHFTRMLELVEEAGLHFLHVFPYSERPGTPAARMP-QLPVPLRR 372

Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN-----SK 443
           ER   L++        F ++ +GQ   VL+E+  +      G +     V +        
Sbjct: 373 ERATRLREAGAAAARRFYESRLGQEETVLLERRDR------GHTEHFCPVRVELPAGLDP 426

Query: 444 NHNIGDIIKVRITDVKISTLYGEL 467
           +   G ++++R        L   +
Sbjct: 427 DALHGALLRLRPHAATADGLLARV 450


>gi|72390349|ref|XP_845469.1| tRNA modification enzyme [Trypanosoma brucei TREU927]
 gi|62359495|gb|AAX79931.1| tRNA modification enzyme, putative [Trypanosoma brucei]
 gi|70802004|gb|AAZ11910.1| tRNA modification enzyme, putative [Trypanosoma brucei brucei
           strain 927/4 GUTat10.1]
          Length = 535

 Score =  303 bits (776), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 108/447 (24%), Positives = 193/447 (43%), Gaps = 19/447 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
             FV ++GC  NV D   M       GY   +    AD  +LN+C ++  + E   S + 
Sbjct: 52  TIFVHTFGCGHNVSDGEYMAGQLVESGYNVTDEFGQADAYLLNSCTVKNPSEEHFVSMMN 111

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R+R+             ++VAGCV QA+     ++   V+VV G ++   +  +++ A  
Sbjct: 112 RVRD---------TGKPLIVAGCVPQADPTN--KQWGDVSVV-GVRSIDCVSYVVQEALQ 159

Query: 146 GKRVV----DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           G  V       D    ++   L  +D    R+      + I  GC   CT+C     RG 
Sbjct: 160 GNCVRLLGETEDQRQSNESNELPALDLPKVRRNKYIEIIPISVGCLNNCTYCKTKQARGD 219

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
             S  +  +VD  R+++ +GV EI L  ++  A+              +   L     ++
Sbjct: 220 LRSYPVEVIVDRVREVVRDGVKEIRLTSEDSGAYGIDIGTDVVYLLRAVAVELEGTDVML 279

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+  +                    +  ++H+PVQSGSD IL++M R +T  E+   ID 
Sbjct: 280 RVGMSNPPYLLRHVDGFATVLKHPNVYEFVHIPVQSGSDSILQTMLREYTVEEFFMCIDS 339

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           IR+  P   +++D I  FPGE + +++ TM+L  +  +      ++ PR  TP + M +Q
Sbjct: 340 IRAAVPKATVATDIICAFPGEGESEWQETMELCKRAKFEVINITRFYPRRNTPAAAM-KQ 398

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           +  +V   R   L            D+ VG++  V + +   +K  LVG +     V+++
Sbjct: 399 IPTDVAKHRTTELTNFFN--SYRTFDSMVGEVHNVTLLETAHDKHHLVGHTKNYVQVLVD 456

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                +G+ + V IT     ++ G ++
Sbjct: 457 PAQARMGESVVVVITSATKYSVMGRVL 483


>gi|294085380|ref|YP_003552140.1| MiaB-like tRNA modifying enzyme [Candidatus Puniceispirillum
           marinum IMCC1322]
 gi|292664955|gb|ADE40056.1| MiaB-like tRNA modifying enzyme [Candidatus Puniceispirillum
           marinum IMCC1322]
          Length = 439

 Score =  303 bits (776), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 131/463 (28%), Positives = 205/463 (44%), Gaps = 41/463 (8%)

Query: 23  VPQRFF--VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKV 80
           +P+R    V+++GC++N+++S  + +   + G +        D I+ NTC +  +A ++ 
Sbjct: 1   MPKRNTPQVETFGCRLNIWESEVIREKAAAAGVQ--------DAIIFNTCAVTSEAEKQA 52

Query: 81  YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL- 139
              + + R       +E  D  ++V GC AQ    E       V+VV+G     +     
Sbjct: 53  RQAIRKAR-------RENPDSQIIVTGCAAQ-IAAENWASMDEVDVVLGNHDKLQAESWR 104

Query: 140 ---------LERARFGKRVVDTDYSVEDKFERLSIVDGGYNR-----KRGVTAFLTIQEG 185
                    ++    G R    + +  +    +  V    +      +    AFL IQ+G
Sbjct: 105 DLGSASAACIDDVSDGTREDVREGTAAEVVSDIMQVREMASHMLDGFQEHTRAFLQIQQG 164

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           CD  CTFC++PY RG   S  L Q++D A+ L+D G CEI L G ++ +W G  L G   
Sbjct: 165 CDHRCTFCIIPYGRGNNRSAGLHQIIDAAQALVDGGACEIVLTGVDITSW-GSDLAGRPR 223

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
               +   L EI  L RLR ++  P +    L+   GD D LMP+ H+  Q G D ILK 
Sbjct: 224 LGRLVRALLREIPALPRLRLSSIDPAEGDAELMAVLGDDDRLMPHFHISAQHGDDLILKR 283

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           M RRH   +  +  D  R  RPDI   +D I GFP E D   +A+ +++ + G      F
Sbjct: 284 MKRRHLGRDIIRFCDEARRRRPDIVFGADMIAGFPTEDDAAHQASCEMIARAGITHLHVF 343

Query: 366 KYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK 425
            YSPR GTP + M      ++K  R   L+     +     D  +G   ++L+E   K  
Sbjct: 344 PYSPRPGTPAALMPPVAAADIKN-RAASLRAIGSGRLSHLLDNSIGSFDQLLVESGNK-- 400

Query: 426 GKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
               G       + L       G ++ V+ITD     L  E V
Sbjct: 401 ----GHGRNFSKIRLQGDYVPAGSLVDVKITDRDSQELIAERV 439


>gi|262277882|ref|ZP_06055675.1| conserved hypothetical protein [alpha proteobacterium HIMB114]
 gi|262224985|gb|EEY75444.1| conserved hypothetical protein [alpha proteobacterium HIMB114]
          Length = 419

 Score =  303 bits (775), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 114/441 (25%), Positives = 200/441 (45%), Gaps = 31/441 (7%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           + +YGC++N+Y+S  M+        +        + I+ N+C +  +A +KV   +    
Sbjct: 6   IITYGCRLNIYESEVMQKHLEKANLK--------NYILFNSCSVTNEAKKKVIDDIR--- 54

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
                  K+  +  ++V GC +Q + +  L     V+ V+G +        L+     ++
Sbjct: 55  ----KFKKKYPNKKIIVTGCASQIDSKTFLS-MSEVDHVIGNKEKMEFETFLK--ISNEK 107

Query: 149 VVDTDYSVEDKFERLSIVDGG-YNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
           + +    + D  E  +I      + +    AF+ IQ GCD  CTFC +PY RG   S  +
Sbjct: 108 IAN---KISDIMELKTIAPQFIESFENHSRAFIQIQNGCDHRCTFCTIPYGRGNSRSLPI 164

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
           + ++++ + L + G  EI L G ++ +  G  LD +      +   L   K L RLR ++
Sbjct: 165 NNILEQIKMLNEKGFNEIILTGVDLTS-YGPDLDEKVNLGKLVEAILKNNKELKRLRLSS 223

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
               ++   L +       +MP+ HL +QSG + ILK M RRH         ++I+  RP
Sbjct: 224 LDSIEIDSLLFEILSSEKRVMPHFHLSMQSGDNMILKRMKRRHQREHAIDFCNKIKLARP 283

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
           ++   +D I GFP ET++ F  T+ ++D+        F +SP    P S M  QV +N+ 
Sbjct: 284 EVIFGADLIAGFPTETEEMFHNTLKIIDECDLTLLHIFPFSPMEKAPASKMP-QVPKNII 342

Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS-KNHN 446
            ER   L++K + +        VG+ + VL EK+        G S     V ++S  +  
Sbjct: 343 KERAKILREKGQLKMKDKFKDTVGKTLNVLTEKNS------FGYSENYLKVKISSINSLK 396

Query: 447 IGDIIKVRITDVKISTLYGEL 467
            G II  +IT    + L   +
Sbjct: 397 EGQIIPAQITGYNPNHLEATI 417


>gi|300728328|ref|ZP_07061694.1| tRNA-I(6)A37 modification enzyme MiaB [Prevotella bryantii B14]
 gi|299774440|gb|EFI71066.1| tRNA-I(6)A37 modification enzyme MiaB [Prevotella bryantii B14]
          Length = 285

 Score =  303 bits (775), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 110/285 (38%), Positives = 180/285 (63%), Gaps = 7/285 (2%)

Query: 190 CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC---- 245
           C +C+VP+TRG E SR +  ++ E + L D G  E+TLLGQNVN+  G   +G++     
Sbjct: 1   CHYCIVPFTRGRERSRDVESILREVKDLHDKGFKEVTLLGQNVNS-YGLLPNGKRPENGT 59

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
           +F++LL  ++E    +R+R+TTS+P DM++ +++A  D   L  ++H P QSGSD++LK 
Sbjct: 60  SFAELLRKVAESVPDMRVRFTTSNPEDMTEDILQAIADEPNLCHHIHFPAQSGSDKVLKL 119

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           MNR++T  +Y + ID I  + PD  I++D  VG+  ET++DF+ T+ L+ ++G+  AF F
Sbjct: 120 MNRKYTREKYMKTIDAIHRIIPDCGITTDVFVGYHDETEEDFQQTLSLMKEVGFDSAFMF 179

Query: 366 KYSPRLGTPGSN-MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK- 423
           KYS R GT  +  + + + E  K  RL  L     +     N    G++ E+LIE+ GK 
Sbjct: 180 KYSERPGTYAAEHLPDNISEEEKIRRLNELISLQTQISAEQNKKDEGKVFEILIERFGKR 239

Query: 424 EKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           ++ +L+GR+P  ++V++   NH+IG+ +KV+IT    +TL+GE V
Sbjct: 240 DRNQLMGRTPQNKAVIMAKGNHHIGEFVKVKITGSTSATLFGEEV 284


>gi|39933328|ref|NP_945604.1| MiaB-like tRNA modifying enzyme [Rhodopseudomonas palustris CGA009]
 gi|39652953|emb|CAE25695.1| MiaB-like tRNA modifying enzyme [Rhodopseudomonas palustris CGA009]
          Length = 423

 Score =  303 bits (775), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 126/452 (27%), Positives = 196/452 (43%), Gaps = 44/452 (9%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
             V ++GC++N ++S  +       G         AD IV+N+C +  +A  +    + +
Sbjct: 3   VEVVTFGCRLNAFESELIRREAEGAGL--------ADTIVVNSCAVTNEAVAQARQQIRK 54

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT------YYRLPELL 140
           ++       +   +  ++V GC AQ E       +  V+ V+G         ++     L
Sbjct: 55  LK-------RARPEARIIVTGCAAQTEPATFAAMA-EVDRVIGNDDKTRSDAWHAAKGAL 106

Query: 141 E-------RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC 193
           E              V D     E     L     G  R      F+ +Q GCD  CTFC
Sbjct: 107 EAGPSFGLDTEQKIAVADIMAVREMAPHLLDGYQSGLPRV-----FVQVQNGCDHRCTFC 161

Query: 194 VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS 253
           ++PY RG   S  +  VV++ R L + G  EI L G ++ +  G  L G     + +   
Sbjct: 162 IIPYGRGNSRSVPVGAVVEQVRLLAERGHAEIVLTGVDLTS-YGADLPGAPKLGTLVKKV 220

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
           L  +  L RLR ++    +    LI A      LMP+LHL +Q+G D +LK M RRH   
Sbjct: 221 LRHVPELQRLRISSIDQVEADRDLIDALATEPRLMPHLHLSLQAGDDLVLKRMKRRHCRA 280

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
           +     + +R +RPDIA+ +D I GFP ET++ F+ ++DLV++ G      F YSPR GT
Sbjct: 281 DAVAFCEEVRLLRPDIALGADLIAGFPTETEEMFQRSLDLVEECGLTFLHVFPYSPRPGT 340

Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSP 433
           P + M  Q+D  V  +R   L+           DA +G    VLIE          GR+ 
Sbjct: 341 PAARMP-QLDGRVIRDRAARLRAAGEAALQRRLDAEIGATRAVLIESP------TQGRTE 393

Query: 434 WLQSVVLNSKNHNIGDIIKVRITDVKISTLYG 465
               V ++      GD+  +RI     + L  
Sbjct: 394 HFLPVAISG--ATPGDVQTLRIIGHDGARLTA 423


>gi|313220891|emb|CBY31727.1| unnamed protein product [Oikopleura dioica]
          Length = 1590

 Score =  303 bits (775), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 111/466 (23%), Positives = 202/466 (43%), Gaps = 27/466 (5%)

Query: 11  AHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD---DADLIVL 67
           A    Q        Q+ +V+++GC  N  DS  M       GY+         + DL +L
Sbjct: 37  AGSQIQADSSFARGQKIYVRTWGCTHNTSDSEYMAGQLAEAGYDVKLDDAKRLECDLWLL 96

Query: 68  NTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVV 127
           N+C ++  A +   + +     +         ++ VVVAGCV Q    +   +       
Sbjct: 97  NSCTVKAPAEDHFKNAINAAHKV---------NIPVVVAGCVPQGAPSDKFVKG---LST 144

Query: 128 VGPQTYYRLPELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGC 186
           +G Q   R+ E++E    G  V +        K    + +     R+  +   ++I  GC
Sbjct: 145 IGVQQIDRVVEVVEETLKGNTVKLLGPKKRAGKRIGGADLGLPKVRRNALIEIISINTGC 204

Query: 187 DKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT 246
              CT+C   + RG   S  + ++V    +  + G+ E+ L  ++  A  G+ +      
Sbjct: 205 LNSCTYCKTKHARGDLASYPIDEIVARFEQAFEQGIVEVWLTSEDTGA-YGRDI---GTN 260

Query: 247 FSDLLYSLSE-IKGLVRLRYTTSHPRDMSDCL--IKAHGDLDVLMPYLHLPVQSGSDRIL 303
             +LL ++ + I     +R   ++P  + + L  I    +   +  +LH+PVQSGSD +L
Sbjct: 261 IVELLNAVVKTIPEGCMMRIGMTNPPYILEHLEGIAKILNHPRVYSFLHVPVQSGSDAVL 320

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
            SM R +   ++ +++D +R+  PD  I++D I GFP ET++DF  T+ L +K  +   F
Sbjct: 321 NSMRREYNREDFCKVVDTLRANVPDCNIATDIIAGFPTETEEDFDETISLCEKYKFPSLF 380

Query: 364 SFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK 423
             ++ PR GTP +   EQ+   V  ER   L      +     +   G+   VLI +   
Sbjct: 381 MNQFFPRPGTPAAKW-EQIPRQVIKERTKKLSNVF--KSYLPFEGREGERHSVLITEMAH 437

Query: 424 EKGKLVGRSPWLQSVVLNSKNHNI-GDIIKVRITDVKISTLYGELV 468
           +K  LVG +     +++      + G  + V +      ++ G +V
Sbjct: 438 DKVSLVGHTKSYHQILVKGNPDKLMGKRVDVVVYQTTKHSMLGRIV 483


>gi|313886783|ref|ZP_07820489.1| tRNA methylthiotransferase YqeV [Porphyromonas asaccharolytica
           PR426713P-I]
 gi|312923747|gb|EFR34550.1| tRNA methylthiotransferase YqeV [Porphyromonas asaccharolytica
           PR426713P-I]
          Length = 454

 Score =  302 bits (774), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 111/447 (24%), Positives = 201/447 (44%), Gaps = 29/447 (6%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDD------ADLIVLNTCHIREK 75
           +V +R    + GC++N  ++  +     + G ER++           D+ ++N+C + + 
Sbjct: 10  LVGKRAAFYTLGCRLNYAETSTIARQLATVGVERISDEHHHTTEVVPDICIVNSCSVTDT 69

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135
           A +K  S + R+        +E  + L+VV GC AQ +G+ I  + P V++VVG      
Sbjct: 70  ADKKCRSLINRLH-------REYPEALIVVTGCYAQLQGDRIA-QMPGVDLVVGSGRKSE 121

Query: 136 LPELL-------ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
           +  LL        + R   +V     +   + +         +R R    FL +Q+GC+ 
Sbjct: 122 IVSLLTELYQKRNQERTQPQVATPHVTARRELQHFEPSVSSDDRTR---HFLKVQDGCNY 178

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS 248
           +CT+C +P  RGI  + S++ +V +A ++ + G  EI L G N+    G        T  
Sbjct: 179 YCTYCTIPAARGISRNGSIASLVAQAERVAELGGKEIILTGVNI----GDFGRTTGETLL 234

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
           +LL+ L+++ G+ R R  +  P  ++  +I+   +    MP+ H+P+QSGSD++L+ M R
Sbjct: 235 ELLHQLTQVAGIARYRIGSIEPELLTPEIIQFVAETAQFMPHFHIPLQSGSDQVLRLMRR 294

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
            +    + + +  I  + PD  +  D I G  GE  +    T+  + +  ++Q   F YS
Sbjct: 295 HYDTALFAERLKLIYELIPDAFVGVDVIAGMRGELSEHHAETLAFLKEQPWSQLHVFPYS 354

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL 428
            R GT    +   V    K  R   L     E+  +F     G +  VL E+  +    +
Sbjct: 355 ERKGTKALEIKPAVPAAEKKLRTQELLALSSERHNAFCAPFTGSVRPVLWEET-RHGEMM 413

Query: 429 VGRSPWLQSVVLNSKNHNIGDIIKVRI 455
            G +     V        +G I  VR+
Sbjct: 414 EGFTDNYIRVAQPYNPELVGAITPVRL 440


>gi|225620134|ref|YP_002721391.1| 2-methylthioadenine synthetase [Brachyspira hyodysenteriae WA1]
 gi|225214953|gb|ACN83687.1| MiaB, 2-methylthioadenine synthetase [Brachyspira hyodysenteriae
           WA1]
          Length = 411

 Score =  302 bits (773), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 136/425 (32%), Positives = 228/425 (53%), Gaps = 22/425 (5%)

Query: 50  SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCV 109
            +G+ +  + ++AD I++NTC +R  A E+V+S   R++    +R K   D  +++ GC+
Sbjct: 2   QEGFIQTENHENADNIIINTCSVRAHAEERVFS---RVKLFNANRKKNKKDTKIIIMGCM 58

Query: 110 AQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGG 169
           AQ   E +      V+ +        + + L+      R  + +Y     +         
Sbjct: 59  AQTSKEHLENL--GVDKIFDVYNEVNIIDYLKDEEVFVRKFNDNYIFNKSY--------- 107

Query: 170 YNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLG 229
            +  +   AF+ I  GC+ +CT+C+VP+TRG  +SR   ++++E ++LID+G  EITLLG
Sbjct: 108 VDEDKPHKAFIPISHGCNNWCTYCIVPHTRGKMVSRKSDEIIEELKRLIDDGAKEITLLG 167

Query: 230 QNVNAWRGKGLDGEKCTFSDLLYSLSEI-----KGLVRLRYTTSHPRDMSDCLIKAHGDL 284
           QNVN+  G  +D E   F++LLY L +I     K  V +R+ TSHP+D    L  A  +L
Sbjct: 168 QNVNS-YGLDIDNE-INFTELLYKLDKIIYEKAKDKVWIRFLTSHPKDFDKDLADAIWNL 225

Query: 285 DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETD 344
           + L  ++HLP QSGSDRIL  MNR++T  EY + +  +R+   D  IS+D IVG+  ET+
Sbjct: 226 NSLCKHIHLPFQSGSDRILNLMNRKYTKDEYVKKVSYLRNYADDFPISTDIIVGYADETE 285

Query: 345 DDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVS 404
           D+++ T++L++ IG+ +A+ +KYS R G+       Q D+   A RL  L    RE    
Sbjct: 286 DEYQETLNLLESIGFEEAYLYKYSEREGSIAYKKNVQYDKAAGARRLTNLVNYQRELAQK 345

Query: 405 FNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHN-IGDIIKVRITDVKISTL 463
                VG+   V+++   K+    + RS   + +++       +GDI    +T++K  TL
Sbjct: 346 LLSKQVGKKTSVMVDDIAKDNMHYLCRSKENRIILVKKDKELNMGDIFNAEVTEIKSHTL 405

Query: 464 YGELV 468
            G  +
Sbjct: 406 IGNFI 410


>gi|167463031|ref|ZP_02328120.1| MiaB-like tRNA modifying enzyme YliG [Paenibacillus larvae subsp.
           larvae BRL-230010]
          Length = 325

 Score =  301 bits (772), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 100/335 (29%), Positives = 179/335 (53%), Gaps = 10/335 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + ++  V + GC+ N+ DS  M  +   +G+  V+  ++A +I++NTC   + A E+  +
Sbjct: 1   MSEKVKVVTLGCEKNLVDSEIMGGLINERGFSLVDQAEEATVIIVNTCGFIDAAKEESIN 60

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +  +  LK           ++V+GC+ Q   EE+++  P ++ +VG   ++++ +++++
Sbjct: 61  TILDMAELKQ----TAHLKALIVSGCLTQRYKEELMKELPEIDGIVGTGDFHKINDIIDQ 116

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           A  GK+ +     V +    L             TA++ I EGCD  CTFC +P  RG  
Sbjct: 117 ALNGKKPILVGNPVFNYEAALP----RRITTPRYTAYVKIAEGCDNNCTFCSIPIMRGKF 172

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SRS+  ++ E R+L + GV EI+L+ Q+     G  L  +     +LL  +S I+G+  
Sbjct: 173 RSRSMESILAEVRQLSEQGVKEISLIAQDST-NYGIDLY-DSYVLPELLNKVSAIEGIEW 230

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R   ++P   +D LI+       +  Y+ LP+Q   D +LK M R     + R++I +I
Sbjct: 231 VRLHYAYPGFFTDELIETIATNPKICKYIDLPLQHSEDSVLKRMRRPGRQKDARELIRKI 290

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
           RS  PD A+ +  IVGFPGET++DF++ +D V +I
Sbjct: 291 RSRIPDAALRTSIIVGFPGETEEDFQSLVDFVKEI 325


>gi|308233982|ref|ZP_07664719.1| RNA modification enzyme, MiaB family protein [Atopobium vaginae DSM
           15829]
 gi|328944009|ref|ZP_08241474.1| MiaB family RNA modification enzyme [Atopobium vaginae DSM 15829]
 gi|327491978|gb|EGF23752.1| MiaB family RNA modification enzyme [Atopobium vaginae DSM 15829]
          Length = 421

 Score =  301 bits (772), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 123/440 (27%), Positives = 205/440 (46%), Gaps = 30/440 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    + GC++N  ++  +       G + V + ++AD IV+NTC +  +A  K    + 
Sbjct: 5   KVAFINLGCRVNRVETDVIASELERAGCKVV-NQNEADAIVINTCAVTGEAEAKTRKIVR 63

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R  NL N          VV  GCVA    +E+   +  V V        R    + +   
Sbjct: 64  RAANLAN-------VPFVVATGCVANLHADELSSIADNVLV-------ERNKARVCQRVL 109

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G+         +D     +    G  R       + +Q+GC+  C+FC+V   RG   S 
Sbjct: 110 GEFGCIAGSVDDDGDLVQTPTPTGRMRP-----GIKVQDGCNNRCSFCIVWKARGPARSV 164

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           S   V+   R  I +G  E+ L G N+  +R +   G +    DLL  + +   + R+R 
Sbjct: 165 SCESVLASVRSSIAHGAREVVLTGINLGDFR-EIYHGSRVRLPDLLQLILDETPVERVRL 223

Query: 266 TTSHPRDMSDCLIKAHGDL-DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           ++  P D++D L++        + P+LH+ +QSG +  LK M R +TA  Y   ++  R+
Sbjct: 224 SSIEPPDVTDELLRVMAQSQGRIAPFLHICLQSGCEATLKRMRRNYTASSYAAAVENARA 283

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             P IA+ +D IVGFPGETDD+F+ + D  ++IG+A+   F+YS R GTP ++   QVD 
Sbjct: 284 YMPSIALGTDLIVGFPGETDDEFQTSYDFCERIGFAKMHVFRYSKREGTPAASAPNQVDP 343

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
           +V A R   +++     +       +GQ   VL++  G       G +  L  V L+ + 
Sbjct: 344 HVMASRSKLMRELASRMRYEQAKKLIGQTDRVLVQGVG------YGVTSGLFDVHLDKQT 397

Query: 445 HNIGDIIKVRITDV-KISTL 463
                ++ VRI  V K ++L
Sbjct: 398 CLD-TLVDVRILSVMKDASL 416


>gi|92119034|ref|YP_578763.1| MiaB-like tRNA modifying enzyme [Nitrobacter hamburgensis X14]
 gi|91801928|gb|ABE64303.1| MiaB-like tRNA modifying enzyme [Nitrobacter hamburgensis X14]
          Length = 423

 Score =  301 bits (772), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 120/427 (28%), Positives = 192/427 (44%), Gaps = 32/427 (7%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
              V ++GC++N ++S  +       G +        D++++NTC +  +A  +    + 
Sbjct: 2   TIDVVTFGCRLNAFESEVIRRNADDAGLD--------DVVIVNTCAVTNEAVAQARQSIR 53

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           +++       +E     +VV GC AQ E   +  + P V+ V+G     R     +    
Sbjct: 54  KLK-------RERPSARIVVTGCAAQIEP-TMFAQMPEVDRVIGNDDKMRGDTWRDARTA 105

Query: 146 GKRVVDTDYSVEDKF---ERLSIVDGGYNRKRG-----VTAFLTIQEGCDKFCTFCVVPY 197
              V D   + E+K    + +++ +   +   G       AF+ +Q GCD  CTFC++P+
Sbjct: 106 FAAVADFGIANEEKIAVADIMAVTEMAPHLVEGFQGGLPRAFVQVQNGCDHRCTFCIIPF 165

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257
            RG   S  +  VVD+ R L++ G  EI L G ++ +  G  L G       +   L  +
Sbjct: 166 GRGNSRSVPMGAVVDQVRVLVEAGHAEIVLTGVDLTS-YGADLPGGPRLGGLIKRILRHV 224

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
             + RLR ++    +    L+ A  + + LMP+LHL +QSG D ILK M RRH+  +   
Sbjct: 225 PEMRRLRISSIDSIEADRDLLDAVANEERLMPHLHLSLQSGDDMILKRMKRRHSRRDAID 284

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
              ++R +RPDIA  +D I GFP ETDD F  ++DLV          F YSPR GTP   
Sbjct: 285 FCAQVRRLRPDIAFGADIIAGFPTETDDMFARSLDLVADCDLTFLHVFPYSPRPGTPAVR 344

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQS 437
           M   V   V  +R   L+            A +G   +VLIE          GR+     
Sbjct: 345 MPP-VAGEVIKDRAGQLRAAAGAALRRRLAADIGATRQVLIESA------TQGRTEHFVP 397

Query: 438 VVLNSKN 444
           V +  + 
Sbjct: 398 VAIAGET 404


>gi|159904885|ref|YP_001548547.1| MiaB-like tRNA modifying protein [Methanococcus maripaludis C6]
 gi|159886378|gb|ABX01315.1| MiaB-like tRNA modifying enzyme [Methanococcus maripaludis C6]
          Length = 425

 Score =  301 bits (772), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 114/447 (25%), Positives = 220/447 (49%), Gaps = 28/447 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + +++ YGC +N  D+  +++     + +E  +++DD+D+IV+NTC +R++   ++ S +
Sbjct: 2   KIYIEGYGCTLNTADTEIIKNSVNEFEDFELTDNVDDSDIIVINTCIVRQETEHRMISRI 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER-A 143
              ++L            VVVAGC+A+A  ++I     + +V++ P+       +L+   
Sbjct: 62  EYFKSLDKK---------VVVAGCMAKALPKKIKN---LADVLIMPREAQYSGIILKNNL 109

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             G    +   +    FE            +G+   L I EGC   CT+C+V   RG  +
Sbjct: 110 LKGCSEKNGKSNENLNFEDQLNEKIKKVSSQGLITALPICEGCLGSCTYCIVKRARGNLV 169

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           S     +  +A +L+  G   + +  Q+  A  G   +    +  +L+  +SEI     +
Sbjct: 170 SYDRDLIFKKAEELVKTGTKCLLVTAQDT-ACYGLDNND---SLPNLINDISEIPEKFAM 225

Query: 264 RYTTSHPRDMSDCLIKAHG--DLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R    H +     L +       + ++ +LHLP+QSG D++LK MNR ++  E+  +++ 
Sbjct: 226 RIGMMHAKFAEPLLDELIESFKSEKVVKFLHLPIQSGDDQVLKDMNRNYSVDEFISVLNE 285

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
            +    ++  ++D IVGFP ET++ F+ T+++V KI      + KYS R  T  + + +Q
Sbjct: 286 FKLKIKNLNFTTDVIVGFPTETEEAFQNTLEIVKKIKPDFTHAAKYSQRKYTKAAVL-KQ 344

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           VD  ++ ER   L +  RE     N   +G+  E+L+ K        +G +   ++V+ +
Sbjct: 345 VDTKIRKERSEILNELRRELSYENNKRHIGETFEILVTKTN------LGVTNNCKNVIFD 398

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
            +N  IG+  +V++T  K   L G+L+
Sbjct: 399 -ENAKIGEFRQVKVTGAKTFGLSGKLL 424


>gi|159041572|ref|YP_001540824.1| RNA modification protein [Caldivirga maquilingensis IC-167]
 gi|157920407|gb|ABW01834.1| RNA modification enzyme, MiaB family [Caldivirga maquilingensis
           IC-167]
          Length = 422

 Score =  301 bits (771), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 135/453 (29%), Positives = 217/453 (47%), Gaps = 39/453 (8%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           +P  +++++YGC +N  DS  ME+     GY +VN    ADLI++NTC +RE +      
Sbjct: 1   MP-TYYIETYGCWLNKADSALMEEDLRRMGYVKVNDPAQADLILVNTCAVREDSE----- 54

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
               IR LK           ++VAGC+ +A   EI+R +P   ++V P +   L ELL+ 
Sbjct: 55  ----IRELKAIEKYSRLGKKLIVAGCLTKARPSEIMRLAPDA-LIVNPSSVENLAELLKG 109

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
                                 +V      +      + IQ GC   C++CV+ YTRG  
Sbjct: 110 GVN--------------LTERLMVRIPKYYESSHVYVVPIQVGCLGNCSYCVIKYTRGGM 155

Query: 203 ---ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS-LSEIK 258
               S  LS V +   K +  G  EI L GQ ++A  GK    +     DLL + L +++
Sbjct: 156 GWVKSADLSVVKESIAKAVARGAREIYLTGQEISA-YGKD---KGYDLVDLLEAVLRDVE 211

Query: 259 GLVRLRYTTSHPRD---MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
           G   +R     P +   M   LI    +   +  + H+PVQSGSD++L+ M R++T   +
Sbjct: 212 GRYLIRLGMLEPLELEGMIHRLIDVIKNDWRIYRFFHIPVQSGSDKVLRLMKRKYTVDLF 271

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
           ++ ++ IR    +  I++D IVG PGE D DF+ ++ L+ ++G  +    +YSPR  T  
Sbjct: 272 KREVELIRRSFRNSFIATDIIVGHPGEDDSDFQESVRLIRELGIDKVHVARYSPRPFTEA 331

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWL 435
           + M  QV + VK +R   L K   E   S N   VG   E LI   G +   L+ R    
Sbjct: 332 AYMR-QVPDQVKKQRSSMLSKVALEVAYSRNLEYVGGTYEGLISSIGFKGRGLMARLMDY 390

Query: 436 QSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           + V++N  +  +G  +K+++T      L G+++
Sbjct: 391 RPVIINEGD--LGSFVKIKVTGASSINLIGKII 421


>gi|32266810|ref|NP_860842.1| hypothetical protein HH1311 [Helicobacter hepaticus ATCC 51449]
 gi|81665617|sp|Q7VGL0|RIMO_HELHP RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|32262862|gb|AAP77908.1| conserved hypothetical protein [Helicobacter hepaticus ATCC 51449]
          Length = 448

 Score =  301 bits (771), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 103/460 (22%), Positives = 210/460 (45%), Gaps = 37/460 (8%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           Q   + S GC  N+ DS  M     S  Y     +++AD+I++NTC   E A ++    +
Sbjct: 7   QSLHLISLGCTKNLVDSEVMLGRLQS--YTLTQELENADVIIINTCGFIESAKQESIQTI 64

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
               + +          L+VV+GC+A+   +E+    P ++++ G   Y ++  ++ + R
Sbjct: 65  FHASSNRK------RGALLVVSGCLAERYTKELKEEIPEIDIITGVSDYDKIDSMIAQRR 118

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
             +      +  ++  ER+ I            A++ + EGC++ C+FC +P  +G   S
Sbjct: 119 SIESA--KVFLADEHNERVII-------GSSFHAYIKLSEGCNQACSFCAIPQFKGKLHS 169

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R+L   + E   L + G  + + + Q+ ++   + L G+K     L+ ++  +   +  R
Sbjct: 170 RTLQSTLKELTNLYNQGFRDFSFIAQD-SSSYMRDL-GQKDGLMQLIRAVDNLNLPISAR 227

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
               +P   S  LI++       +PY  +P+Q  +D +LK+M R      + ++++ +R+
Sbjct: 228 ILYLYPSSTSLQLIESIAQSKSFLPYFDMPIQHIADAMLKTMRRGADKATHLELLNAMRA 287

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             P   + + FI+G P E +  F    D ++   + +   F YSP+ GT   +M  + + 
Sbjct: 288 -VPHNFVRTSFIIGHPNEDEKAFLELHDFIESFAFDRINLFAYSPQEGTAADSMPNRPNT 346

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-------GRSPW--- 434
            +  +R+  L K ++ Q  + N A VGQ ++ ++E   +             G+      
Sbjct: 347 KITNQRINTLNKIIQSQYKAHNLALVGQEVDAILEGKSEVSEYFYKARLKLWGKDIDGEI 406

Query: 435 --LQSVVLNSKNHNI----GDIIKVRITDVKISTLYGELV 468
               S +++S N  +    G   +V+IT  K + L+G+ +
Sbjct: 407 LINDSEIVDSNNQMLLLKEG-YYRVQITQCKDNFLFGKAL 445


>gi|307721185|ref|YP_003892325.1| MiaB-like tRNA modifying enzyme [Sulfurimonas autotrophica DSM
           16294]
 gi|306979278|gb|ADN09313.1| MiaB-like tRNA modifying enzyme [Sulfurimonas autotrophica DSM
           16294]
          Length = 424

 Score =  301 bits (771), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 122/443 (27%), Positives = 217/443 (48%), Gaps = 29/443 (6%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ + K++GC+ N+YDS  M        YE   + D+AD+IV+N+C +   A   V S++
Sbjct: 11  KKVYFKTFGCRTNLYDSQVMMSSLKE--YEITQNEDEADVIVINSCTVTNGADTHVRSYI 68

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            +I        K  G   + + GC A  +GE +L+ +  ++ V G     ++  LL + +
Sbjct: 69  SQIE-------KNNGGAKLFLTGCGAHTKGESLLKEN-RIHGVFGQSEKQKIDTLLAKEK 120

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
                 D ++  +       +VD    + R   AF+ IQEGC+  C++C++PY RG   S
Sbjct: 121 PFYEPGDLNHIDD------MVVDEFVGKSR---AFIKIQEGCNFRCSYCIIPYVRGDARS 171

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
              ++++++  +L  NG  E  L G NV +  G+     K + + L+  +S+I+G+ R+R
Sbjct: 172 MDENRILEQVARLAINGFGEFILTGTNVGS-YGQDT---KTSLAKLMKKMSQIRGVRRIR 227

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
             +  P  ++D   K   D   +  ++H+ +Q  S  +LK MNRR+   + +++ + +  
Sbjct: 228 LGSVEPIQITDEF-KEILDEPWMEKHMHIALQHTSPTMLKLMNRRNVYKQDKELFELLAD 286

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
                AI +DFI G PGE++  +R  M     +      +F YS R GTP + M  +V+ 
Sbjct: 287 K--GYAIGTDFITGHPGESEALWREAMINAKDLPLTHIHAFTYSKRDGTPSAVMKPEVNG 344

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
            +  ERL  LQ  + ++   F +A  G  +EVLIE    + G   G       +V+ S  
Sbjct: 345 KIAKERLHELQALIADKNFDFRNAYKG-ELEVLIE--SHKDGLYHGFDQHFNKIVVESNE 401

Query: 445 HNIGDIIKVRITDVKISTLYGEL 467
             +G+ I +   +VK    Y  +
Sbjct: 402 DLVGNWINIEKYEVKKDFNYARI 424


>gi|316931775|ref|YP_004106757.1| MiaB-like tRNA modifying enzyme [Rhodopseudomonas palustris DX-1]
 gi|315599489|gb|ADU42024.1| MiaB-like tRNA modifying enzyme [Rhodopseudomonas palustris DX-1]
          Length = 423

 Score =  301 bits (771), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 129/450 (28%), Positives = 192/450 (42%), Gaps = 44/450 (9%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
             V ++GC++N ++S  +       G         AD IV+N+C +  +A  +    + +
Sbjct: 3   VEVITFGCRLNAFESELIRREAEGAGL--------ADTIVVNSCAVTNEAVAQARQQIRK 54

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE----- 141
           ++       +   + L++V GC AQ E          V+ V+G     R           
Sbjct: 55  LK-------RARPEALIIVTGCAAQTEPATFAAMQ-EVDRVIGNDDKTRSHAWHAAKGAL 106

Query: 142 --------RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC 193
                          V D     E     L     G  R      F+ +Q GCD  CTFC
Sbjct: 107 DAGPSFGLDTEQKIAVADIMAVREMAPHLLDGYQSGLPRV-----FVQVQNGCDHRCTFC 161

Query: 194 VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS 253
           ++PY RG   S  +  VV++ R+L + G  EI L G ++ +  G  L G     + +   
Sbjct: 162 IIPYGRGNSRSVPVGAVVEQVRRLAERGHAEIVLTGVDLTS-YGADLPGTPKLGTLVKKV 220

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
           L  +  L RLR ++    +    LI A      LMP+LHL +Q+G D ILK M RRH   
Sbjct: 221 LRHVPELQRLRISSIDQVEADRDLIDALATEPRLMPHLHLSLQAGDDLILKRMKRRHARA 280

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
           +        R +RPDIA+ +D I GFP ETD+ F+ ++DLV++ G      F YSPR GT
Sbjct: 281 DAIAFCAEARRLRPDIALGADLIAGFPTETDEMFQRSLDLVEECGLTFLHVFPYSPRPGT 340

Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSP 433
           P + M  Q+D  V  +R   L+           DA  G    VLIE          GR+ 
Sbjct: 341 PAARMP-QLDGRVIRDRAARLRAAGEAALQRRLDAETGASRAVLIESP------TQGRTE 393

Query: 434 WLQSVVLNSKNHNIGDIIKVRITDVKISTL 463
               V ++      GD+  +RIT    + L
Sbjct: 394 HFLPVAISG--ATPGDVQSLRITGHDGTRL 421


>gi|209883419|ref|YP_002287276.1| hypothetical protein OCAR_4262 [Oligotropha carboxidovorans OM5]
 gi|209871615|gb|ACI91411.1| conserved hypothetical protein [Oligotropha carboxidovorans OM5]
          Length = 420

 Score =  301 bits (770), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 117/422 (27%), Positives = 189/422 (44%), Gaps = 32/422 (7%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
             + ++GC++N+ +S  M       G +        D +++NTC +  +A  +    +  
Sbjct: 3   VELVTFGCRLNLAESETMRAEAGRAGLD--------DAVIVNTCAVTNEAVAQARQTI-- 52

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE----- 141
                    +E     ++V GC AQ    E+    P V+ V+G                 
Sbjct: 53  -----RRLRREAPRRRIIVTGCAAQTN-AEMFAAMPEVDRVLGNDDKMHAEAWQATRRAF 106

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
               G++V   D     +     +VDG +N +    AF+ +Q GCD  CTFC++PY RG 
Sbjct: 107 DVDDGEKVAVADIMAVREMAPH-LVDGFHNGQ--PRAFVQVQNGCDHRCTFCIIPYGRGN 163

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
             S ++   VD+ RKL++ G  EI L G ++ +  G  L G     + +   L  +  L 
Sbjct: 164 SRSVAMGAAVDQVRKLVEGGCPEIVLTGVDITS-YGADLPGAPKLGTLVKQILKHVPELK 222

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           RLR ++    +    L+    D + LMP+LHL +Q+G D ILK M RRH   +     ++
Sbjct: 223 RLRLSSIDSVEADHDLLDVIADNERLMPHLHLSLQAGDDLILKRMKRRHARADAVAFCEQ 282

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R +RPD+A  +D I GFP ET+  F  ++ LV+         F YS R GTP + M  Q
Sbjct: 283 VRRLRPDVAFGADLIAGFPTETEVMFERSLALVEDCDLTFLHVFPYSKRPGTPAAKMP-Q 341

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           V+     ER   L++           + +G+  EVLIE        + GR+     V + 
Sbjct: 342 VEGRAIKERARLLREAGDAALKRRLASEIGKTREVLIESA------IQGRTEHFLPVAIE 395

Query: 442 SK 443
           + 
Sbjct: 396 NG 397


>gi|332300096|ref|YP_004442017.1| MiaB-like tRNA modifying enzyme [Porphyromonas asaccharolytica DSM
           20707]
 gi|332177159|gb|AEE12849.1| MiaB-like tRNA modifying enzyme [Porphyromonas asaccharolytica DSM
           20707]
          Length = 454

 Score =  301 bits (770), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 111/447 (24%), Positives = 201/447 (44%), Gaps = 29/447 (6%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDD------ADLIVLNTCHIREK 75
           +V +R    + GC++N  ++  +     + G ER++           D+ ++N+C + + 
Sbjct: 10  LVGKRAAFYTLGCRLNYAETSTIARQLATVGVERISDEHHHTTEVVPDICIVNSCSVTDT 69

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135
           A +K  S + R+        +E  + L+VV GC AQ +GE+I  + P V++VVG      
Sbjct: 70  ADKKCRSLINRLH-------REYPEALIVVTGCYAQLQGEQIA-QMPGVDLVVGSGRKSE 121

Query: 136 LPELL-------ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
           +  LL        + R   +V     +   + +         +R R    FL +Q+GC+ 
Sbjct: 122 IVSLLTELYQKRNQERTQPQVATPHVTARRELQHFEPSVSSDDRTR---HFLKVQDGCNY 178

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS 248
           +CT+C +P  RGI  + S++ +V +A ++ + G  EI L G N+    G        T  
Sbjct: 179 YCTYCTIPAARGISRNGSIASLVAQAERVAELGGKEIILTGVNI----GDFGRTTGETLL 234

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
           +LL+ L+++ G+ R R  +  P  ++  +I+   +    MP+ H+P+QSGSD++L+ M R
Sbjct: 235 ELLHQLTQVAGIARYRIGSIEPELLTPEIIQFVAETAQFMPHFHIPLQSGSDQVLRLMRR 294

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
            +    + + +  I  + PD  +  D I G  GE  +    T+  + +  ++Q   F YS
Sbjct: 295 HYDTALFAERLKLIYELIPDAFVGIDVIAGMRGELSEHHAETLAFLKEQPWSQLHVFPYS 354

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL 428
            R GT    +   V    K  R   L     E+  +F     G +  VL E+  +    +
Sbjct: 355 ERKGTKALEIKPAVPAAEKKLRTQELLALSSERHNAFCAPFTGSVRPVLWEET-RHGEMM 413

Query: 429 VGRSPWLQSVVLNSKNHNIGDIIKVRI 455
            G +     V        +G I   R+
Sbjct: 414 EGFTDNYIRVAQPYNPELVGAITPARL 440


>gi|42523418|ref|NP_968798.1| Fe-S oxidoreductase [Bdellovibrio bacteriovorus HD100]
 gi|39575624|emb|CAE79791.1| Fe-S oxidoreductase [Bdellovibrio bacteriovorus HD100]
          Length = 443

 Score =  301 bits (770), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 115/455 (25%), Positives = 208/455 (45%), Gaps = 26/455 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYE-RVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ V ++GC++N YD+  ++    + G+   V+   DA + VLNTC +  +A ++   ++
Sbjct: 2   KYQVHTFGCKVNTYDAGLIQKNLNASGFMPVVSGQKDARIHVLNTCAVTAEATKEAVRYI 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R++              +VV GC AQ +        P  +++V       LP+LL +  
Sbjct: 62  RRLKVK-------DPFCTIVVTGCAAQVDTGS-FSSLPGADLIVANSHKSSLPDLLNKHF 113

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G+       S  + F++  +  GG   K+    FL IQ+GC+ FCT+C++PY RG   S
Sbjct: 114 RGELTEKVFKS--NIFKKEDLEAGGGIEKQHTRTFLKIQDGCNSFCTYCIIPYARGKSRS 171

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
             ++ +V+    L   G  E+ L G ++       +   K    DLL +L     + R R
Sbjct: 172 IPVADLVNRINDLYAEGSREVVLTGVHIG-DYEDQIGDRKYVMEDLLENLLAKTKMPRFR 230

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
            ++  P ++S+ L+  + D   L P+ H+ +QS +  +L  M R++T  + ++ +  I  
Sbjct: 231 LSSLEPVEVSERLLDLYQDS-RLCPHFHMSIQSANTDVLFHMKRKYTQEDVQKSLRAIAD 289

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             P   +  D I GFP ET++ F+ T + +  + + +   F YS R GT  + M   V  
Sbjct: 290 RVPGSFVGMDVITGFPTETEEQFQDTYNCLKDLPWTKLHVFPYSERQGTRAAAMDVSVYP 349

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
           +V+AER   L++    +        +G    VL+ K+  + G+  G S     V +    
Sbjct: 350 HVRAERAARLRELSIARYTEQAQNQIGSTKRVLVLKNAAKGGQ--GLSHDYWPVDIAGAE 407

Query: 445 ----HNIGDIIKVRITDVK-------ISTLYGELV 468
               H  G  + V++T             L GE++
Sbjct: 408 SFLDHWAGQEVDVKVTGYDHSNKQHMEGHLIGEVL 442


>gi|254437866|ref|ZP_05051360.1| MiaB-like tRNA modifying enzyme [Octadecabacter antarcticus 307]
 gi|198253312|gb|EDY77626.1| MiaB-like tRNA modifying enzyme [Octadecabacter antarcticus 307]
          Length = 424

 Score =  301 bits (770), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 122/442 (27%), Positives = 201/442 (45%), Gaps = 42/442 (9%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
            P+     + GC++N Y++  M+++  + G +        + +++NTC +  +A  K   
Sbjct: 6   APK---FTTLGCRLNAYETEAMKELAGAAGVQ--------NAVIVNTCAVTAEAVRKAKK 54

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYY-------R 135
            + ++R       +E  D  ++V GC AQ E E      P V+ V+G             
Sbjct: 55  EIRKLR-------RENPDATLIVTGCAAQTEPET-FIAMPEVSKVIGNTEKMQAATWAGM 106

Query: 136 LPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
            P+L+ +    +  VD   SV +    L  +DG   R R   A++ +Q GCD  CTFC++
Sbjct: 107 APDLIGQTEPVQ--VDDIMSVTETAGHL--IDGFGTRSR---AYVQVQNGCDHRCTFCII 159

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
           PY RG   S     VV++ ++L+  G  EI L G ++ +W G  L         ++  L 
Sbjct: 160 PYGRGNSRSVPAGVVVEQIKRLVGKGYNEIVLTGVDLTSW-GADLPVLPKLGDLVMRILK 218

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
            +  L RLR ++    ++ D L++A      LMP+LHL +Q G D +LK M RRH   + 
Sbjct: 219 LVPDLPRLRISSIDSIEVDDNLMRAIATEPRLMPHLHLSLQHGDDLMLKRMKRRHLRDDA 278

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
            +  +  R +RPD+   +D I GFP ET+  F  ++ LVD         F YSPR GTP 
Sbjct: 279 IKFSEDARKLRPDMTFGADIIAGFPTETEAHFENSLKLVDDCALTWLHVFPYSPRHGTPA 338

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWL 435
           + M     +++KA     L+            A +G+   +L+E         +GR+   
Sbjct: 339 ARMPAVNGKDIKAR-AARLRAAGDIAVAKHLAAQLGKTHHILMENP------RMGRTEQF 391

Query: 436 QSVVLNSKNHNIGDIIKVRITD 457
             V  ++       I+   IT 
Sbjct: 392 TEVTFDTDQPES-RIVTALITG 412


>gi|307128628|ref|YP_003880658.1| putative MiaB-like protein [Candidatus Sulcia muelleri CARI]
 gi|306483090|gb|ADM89960.1| putative MiaB-like protein [Candidatus Sulcia muelleri CARI]
          Length = 431

 Score =  301 bits (770), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 107/439 (24%), Positives = 210/439 (47%), Gaps = 17/439 (3%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           +   +    + GC++N  ++  + + F  +GYE V     AD+ ++NTC + + A +   
Sbjct: 1   MKKNKVAFSTLGCKLNFAETDTIINKFLKKGYEYVKFRSFADIYIINTCSVTKNADK--- 57

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
                ++ L    IK   +  +V  GC +Q   +EI      +++++G +  + +   L 
Sbjct: 58  ----ELKKLVRIAIKNNVNGFIVAIGCYSQVNPKEI-SLINGIDLIIGSKEKFNIINYLT 112

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           +           YS   K E + I    Y++     +FL IQ+GCD  C++C +P  RG+
Sbjct: 113 KKNNAN-----IYSCSLKEENMFIP--SYSKLNRTRSFLKIQDGCDYKCSYCTIPKARGL 165

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE-IKGL 260
             S ++  ++  A+ +I  G+ EI L G N+  +        +  F +L+ ++   +  +
Sbjct: 166 SRSDNIKNIIKYAKNIIKQGIKEIVLTGVNIGDFGKIYNKKNESNFLELIQAMEYYLNDI 225

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R ++  P  +SD +I       + + + H+P+QSGSD IL  M RR++   Y + I 
Sbjct: 226 KRIRISSIEPNLLSDDIINFISKSKIFVNHFHIPLQSGSDEILNKMKRRYSKKIYLERIK 285

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           +I ++ P   I +D IVGFPGE +++F  T  L+ ++  +    F +S R  T    + +
Sbjct: 286 KIFNIMPYACIGTDVIVGFPGEKEENFLETYSLLSELEISYLHVFPFSERKNTEAFFLKD 345

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440
            + + ++++R   L K  ++++ +F    + +   VL E   K+ G + G +        
Sbjct: 346 SITQEIRSKRSKILIKLSKKKKYNFYRKHINKKKNVLFENK-KKSGFIYGYTDNYIRTKT 404

Query: 441 NSKNHNIGDIIKVRITDVK 459
           N K+  +  I  V + +V 
Sbjct: 405 NWKSELVNKIKNVTLLNVD 423


>gi|260574290|ref|ZP_05842295.1| MiaB-like tRNA modifying enzyme [Rhodobacter sp. SW2]
 gi|259023756|gb|EEW27047.1| MiaB-like tRNA modifying enzyme [Rhodobacter sp. SW2]
          Length = 416

 Score =  301 bits (770), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 128/442 (28%), Positives = 193/442 (43%), Gaps = 36/442 (8%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
             + GC++N Y++  M+++  S G +          +V+NTC +  +A  K    + R+ 
Sbjct: 6   FATLGCRLNAYETEAMKELAASAGVQGA--------VVVNTCAVTAEAVRKAKQEIRRLA 57

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR---- 144
                  +E     ++V GC AQ E        P V  VVG     +       A     
Sbjct: 58  -------RENPGAAIIVTGCAAQTEPATFAA-MPEVTRVVGNAEKMQASTWAGLAPDLIG 109

Query: 145 -FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
              +  VD   SV +    L     G+ R R   A+  +Q GCD  CTFC++PY RG   
Sbjct: 110 ITERVQVDDIMSVRETAGHLI---DGFGRHR---AYFQVQNGCDHRCTFCIIPYGRGNSR 163

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           S     VV++ ++L+D G  E+ L G ++ +W G  L G       +L  L  +  L RL
Sbjct: 164 SVPAGVVVEQIKRLVDKGFQEVVLTGVDLTSW-GADLPGTPALGDLVLRILRLVPDLPRL 222

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R ++    ++   L+ A      LMP+LHL +Q+G D ILK M RRH   +  +  +  R
Sbjct: 223 RISSIDSIEVDGALMDAIAGEQRLMPHLHLSLQAGDDLILKRMKRRHLRDDAIRFCNEAR 282

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
            +RPD+   +D I GFP ET+  F+ ++DLV   G      F +S R GTP + M     
Sbjct: 283 RLRPDMVFGADIIAGFPTETEAMFQRSLDLVADCGLTFLHVFPFSARKGTPAARMPLVRG 342

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
             VK ER   L+            A VG+   VL E         +GR+     V   + 
Sbjct: 343 PEVK-ERAARLRAAGDAALQGHLMAQVGRAHAVLTESP------RMGRTGQFTEVAFAAD 395

Query: 444 NHNIGDIIKVRITDVKISTLYG 465
               G I+ V I+ V+   L  
Sbjct: 396 QPE-GRILPVVISGVQGGQLTA 416


>gi|283780184|ref|YP_003370939.1| MiaB-like tRNA modifying enzyme [Pirellula staleyi DSM 6068]
 gi|283438637|gb|ADB17079.1| MiaB-like tRNA modifying enzyme [Pirellula staleyi DSM 6068]
          Length = 435

 Score =  300 bits (769), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 110/398 (27%), Positives = 188/398 (47%), Gaps = 34/398 (8%)

Query: 30  KSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRN 89
            + GC++N Y++  + +     GY      + A L V+NTC +      K    + ++  
Sbjct: 8   VTLGCKVNQYETELVREGLVRFGYHDAVEDEQAQLCVVNTCTVTSDGDSKSRYTIRKLA- 66

Query: 90  LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149
                 +E  D  +VV GC A    +E+L+   +V VV        LP++L+R       
Sbjct: 67  ------RENPDSRIVVMGCYATRAPDELLKLPNVVEVVT---DKRELPDVLQR------- 110

Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209
                     +  + +  G         A++ +Q+GC   C++C++P  R    SR L  
Sbjct: 111 ----------YGVIDLPSGISRFGTRHRAYVKVQDGCLLRCSYCIIPQVRPHVSSRPLQH 160

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC-----TFSDLLYSLSEIKGLVRLR 264
           +V+E ++L+ NG  E+ L G ++    G   +  K        S LL  L ++ G  RLR
Sbjct: 161 IVEEVQRLVANGYREVVLTGVHLG-HYGVESNWNKPKEAWLRLSTLLRELVKLPGDFRLR 219

Query: 265 YTTSHPRDMSDCLIKAHGDLD-VLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
            ++    +++  LI    D    + P+LHL +QSGSD +L+ M RR ++  +      +R
Sbjct: 220 LSSIEATEVTRELISVMADNRQRIAPHLHLCLQSGSDSVLRRMRRRWSSRMFIDRCQMLR 279

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
                 AI++D IVGFPGET+ +F AT++      +++   F YS R GTP + M  Q+ 
Sbjct: 280 DALDAPAITTDIIVGFPGETEAEFEATLETARASAFSKIHIFPYSARKGTPAAEMPGQIS 339

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKH 421
             VK ER   L +  ++ Q  +  + VG+ +E+L+E  
Sbjct: 340 FEVKTERSARLAELEKQMQREYLASLVGKPLELLVEGE 377


>gi|329765663|ref|ZP_08257235.1| MiaB-like tRNA modifying enzyme [Candidatus Nitrosoarchaeum limnia
           SFB1]
 gi|329137855|gb|EGG42119.1| MiaB-like tRNA modifying enzyme [Candidatus Nitrosoarchaeum limnia
           SFB1]
          Length = 422

 Score =  300 bits (769), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 118/445 (26%), Positives = 212/445 (47%), Gaps = 30/445 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + FV++YGC  +  DS  +  +  + G+    +  ++DL ++ TC +++  A K+   + 
Sbjct: 3   KIFVEAYGCSASFADSEMISGLIVNGGHTIAKNSTESDLNIVVTCSVKDSTANKM---IH 59

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           RI++LK+          +VVAGC+ +AE   + + S   ++ +GP +  +  ++++    
Sbjct: 60  RIKSLKSKP--------LVVAGCLPKAELSTVEKISKNASL-LGPNSLGKTLQVIDSTLR 110

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G + V  + +       LS V     R   V   + I  GC   C+FC     +G   S 
Sbjct: 111 GTKFVALEDT------DLSKVGLPKVRLNEVVGIVEIASGCMSECSFCQTKLAKGDLQSY 164

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            +  +V +    +  G  EI L   + N   G  ++ +  T   L+ ++SEI     +R 
Sbjct: 165 RIGDIVRQVETEVSEGCKEIWLTSTD-NGCYGFDINTDLPT---LVKAVSEIPEDFMIRV 220

Query: 266 TTSHPRDMS---DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
              +P  M    + LI++    D +  +LH+PVQSGSD++L  M R HT   +++++ + 
Sbjct: 221 GMMNPMYMPRIKNELIESF-SSDKVYKFLHIPVQSGSDKVLNDMRRGHTVNTFKEVVKKA 279

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R    D  IS+D IVGFP ET +DF  T +L+++         KYS R GT  +   EQ+
Sbjct: 280 RERFADFTISTDIIVGFPSETREDFEKTFELLNETSPDIVNLSKYSARPGTEAAEW-EQI 338

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
           + +    R   +  ++ +  +  N   +G   +VL ++  K    + GR+   +SV    
Sbjct: 339 EASEVKRRSRIIFNQINKISLENNQKWIGWKGKVLFDE--KTDQGIKGRNFAYKSV-FVK 395

Query: 443 KNHNIGDIIKVRITDVKISTLYGEL 467
               IG    V+ITD  I ++ GE+
Sbjct: 396 DEIKIGQTQTVKITDASIHSIIGEI 420


>gi|313672567|ref|YP_004050678.1| miab-like tRNA modifying enzyme [Calditerrivibrio nitroreducens DSM
           19672]
 gi|312939323|gb|ADR18515.1| MiaB-like tRNA modifying enzyme [Calditerrivibrio nitroreducens DSM
           19672]
          Length = 415

 Score =  300 bits (769), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 99/442 (22%), Positives = 211/442 (47%), Gaps = 31/442 (7%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    ++GC++N+ ++  +++    +G++  +S++++D+IV+N+C + + A +K   +L 
Sbjct: 2   KIAFHTFGCKVNLVETENLKEKANLEGFKYTDSIEESDVIVVNSCAVTDNAEKKSLHYLK 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           +++           +  +V+ GC+A+ + + I       +++V       + + ++  + 
Sbjct: 62  KLKQK-------FPEKKIVLTGCLAEMKKDLIKD----ADILVTNIAKDEIFKYIKENKH 110

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
               ++     ++ F    +             FL IQ+GCD FC++C++P  RG   S+
Sbjct: 111 QLTPINELDYYKESFPNAIV--------DKTRGFLKIQDGCDAFCSYCIIPNLRGKPRSK 162

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           S   ++ E  +L+D G  EI L+G ++    G   + +       L    +I G  R+R 
Sbjct: 163 SEEIIIREFSQLVDKGFKEIVLVGIHIG-KYGIDTNTDLKKLLKKL---IQIDGNFRIRL 218

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
           ++    ++   +I+   + D +  +LH+P+Q  +++ILK MNR +T  ++   ++ ++S 
Sbjct: 219 SSLELNEIDQEMIEIILNSDKICKHLHIPLQGSTNKILKLMNRHYTFEKFASTVEYLKSR 278

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
              + I +D I GFPGET++DF    D + K+  +    F +S R GT  S + ++V   
Sbjct: 279 NEFLTIGTDVITGFPGETEEDFTIGYDNLLKLPISYMHVFPFSERKGTKASILPDKVSNE 338

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445
           +K +R   L+     ++ +      G + +VL EK  +        +     V +N +  
Sbjct: 339 IKKKRSGMLRDLSESKRFNSAKRLFGTVQKVLAEKDNR------ALTDNYFEVCIN-EEI 391

Query: 446 NIGDIIKVRITDVK-ISTLYGE 466
                + V+I  V    TL G 
Sbjct: 392 QANSFLNVKIIGVSMDGTLIGR 413


>gi|239944734|ref|ZP_04696671.1| hypothetical protein SrosN15_27314 [Streptomyces roseosporus NRRL
           15998]
 gi|239991198|ref|ZP_04711862.1| hypothetical protein SrosN1_28096 [Streptomyces roseosporus NRRL
           11379]
          Length = 466

 Score =  300 bits (768), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 122/463 (26%), Positives = 196/463 (42%), Gaps = 50/463 (10%)

Query: 48  FFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAG 107
             + G++ V    DAD+ V+NTC   E A +     L    +LK+     G    VV  G
Sbjct: 1   MAADGWDLVEDASDADVAVVNTCGFVEAAKKDSVDALLEANDLKD----HGRTQAVVAVG 56

Query: 108 CVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER------------------------- 142
           C+A+  G+++    P  + V+G   Y  + + L+                          
Sbjct: 57  CMAERYGKDLAEALPEADGVLGFDDYADISDRLQTILNGGIHASHTPRDRRKLLPISPAE 116

Query: 143 ------ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRG-----VTAFLTIQEGCDKFCT 191
                 A  G        + ED  E ++ V G     R        A + +  GCD+ C+
Sbjct: 117 RQDAAVALPGHAQETPAPAPEDLPEGVAPVSGPRAPLRRRLGTSPVASVKLASGCDRRCS 176

Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLL 251
           FC +P  RG  ISR  S V+ E R L + GV E+ L+ +N N   GK L G+      LL
Sbjct: 177 FCAIPSFRGSFISRRPSDVLQETRWLAEQGVKEVMLVSEN-NTSYGKDL-GDIRLLETLL 234

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
             L+++ G+ R+R +   P +M   LI        + PY  L  Q  S  +L++M R   
Sbjct: 235 PELADVDGIERIRVSYLQPAEMRPGLIDVLTSTPKVAPYFDLSFQHSSPSVLRTMRRFGD 294

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
              + +++D IRS  P     S+FIVGFPGET+ D       +          F YS   
Sbjct: 295 TDRFLELLDTIRSKAPQAGARSNFIVGFPGETEADLAELERFLTGARLDAIGVFGYSDEE 354

Query: 372 GTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKL-V 429
           GT       ++D +V AERL  + +   E      +  VG+ ++VL+E    ++ G++ +
Sbjct: 355 GTEAVGYENKLDADVIAERLAHISQLAEELTSQRAEERVGETLQVLVESVESEDDGEVAI 414

Query: 430 GR----SPWLQS-VVLNSKNHNI-GDIIKVRITDVKISTLYGE 466
           GR    +P     VV  ++   + G +++ +    +   L  E
Sbjct: 415 GRAAHQAPETDGQVVFTTREGLVPGRMVEAKAVGTEGVDLVAE 457


>gi|88800724|ref|ZP_01116282.1| 2-methylthioadenine synthetase [Reinekea sp. MED297]
 gi|88776500|gb|EAR07717.1| 2-methylthioadenine synthetase [Reinekea sp. MED297]
          Length = 382

 Score =  300 bits (768), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 107/366 (29%), Positives = 173/366 (47%), Gaps = 31/366 (8%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
            P      S GC  N  DS R+     ++GY  V S ++AD++++NTC   + A ++   
Sbjct: 20  APGNVGFISLGCPKNTVDSERIITQLRAEGYNIVPSYNNADVVIVNTCGFIDSAVQESLD 79

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +G              +  V+V GC+  A+ ++I    P V  V GP  Y  +      
Sbjct: 80  TIGEA---------LNKNGKVLVTGCLG-AKEDDIREVHPNVLAVTGPHAYDHVV----- 124

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
               K+V +      D F  L +   G        A+L I EGC+  CTFC++P  RG  
Sbjct: 125 ----KQVHEVVPPKHDPFTSL-VPKAGVKLTPKHYAYLKISEGCNHRCTFCIIPSFRGDL 179

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYSL 254
           +SR +SQV+ EA  L+++G  E+ ++ Q+ +A+      R     G   K    +L   L
Sbjct: 180 VSRPISQVLSEAESLVNHGTKELLVISQDTSAYGVDTKYREDFWKGRAVKTRMKELCEEL 239

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
            ++   VR+ Y   +P       + A    + ++PYL +P Q  S  +LK+M R   A +
Sbjct: 240 GQLDAWVRMHYVYPYPHVDDIIPLMA---ENRILPYLDIPFQHASPSVLKNMKRPAHAEK 296

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
               I + R + PDI + S FIVGFPGET+DDF+  +D +++    +  +FKYS   G  
Sbjct: 297 VLNRIHQWRDICPDITLRSTFIVGFPGETEDDFQMLLDFLEEAQLDRVGAFKYSNVDGAR 356

Query: 375 GSNMLE 380
            + + +
Sbjct: 357 SAALPD 362


>gi|269215615|ref|ZP_06159469.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Slackia exigua ATCC
           700122]
 gi|269131102|gb|EEZ62177.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Slackia exigua ATCC
           700122]
          Length = 423

 Score =  299 bits (767), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 129/440 (29%), Positives = 194/440 (44%), Gaps = 22/440 (5%)

Query: 16  QIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREK 75
              D      RF + + GC++N  +S  +  M    G         ADLIV+NTC +  +
Sbjct: 2   HSTDAFEAGLRFSIVNLGCKVNRVESDEVASMLLGSGGIEA-DPSSADLIVVNTCTVTGE 60

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135
           A +K    +          ++   D  VVV GC +  +          V+VV     +  
Sbjct: 61  AEKKTRKAVRHA-------LRASDDARVVVTGCASAIDPATYEAMGERVDVVPRLSLHDY 113

Query: 136 LPELLERARFGKRVVDTDYSVEDK-FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCV 194
           L  +      G R   +  +  D+ F                   + IQ+GCD  CTFC+
Sbjct: 114 LTGIGAHGAQGDREPASCAAKADRSFALSDAAAARVGGSFPTRVPVKIQDGCDNACTFCI 173

Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL 254
           V   RG   SR  + V  E   L   GV EI L G N+  +R           + L   L
Sbjct: 174 VHVARGRSRSRDAAAVEREVSALGAAGVREIVLSGINLGRYRCGD-----AGLATLAERL 228

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLD-VLMPYLHLPVQSGSDRILKSMNRRHTAY 313
                  RLR ++  P+ + D LI+        +  +LHLP+QSGS RIL+ M R ++A 
Sbjct: 229 LSCAPETRLRISSIEPQSVDDALIEVMATSGGRVCRHLHLPLQSGSTRILRQMARPYSAQ 288

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
            +  ++DR+R+  P IA+S+D IVGFPGETD DF +T D+V   G+++   F+YSPR GT
Sbjct: 289 RFAGLVDRLRARIPGIALSTDVIVGFPGETDADFASTCDVVRTCGFSKLHVFRYSPRRGT 348

Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSP 433
           P +   +QV   VK ER   L+    E +     +  G +   L+E H +        + 
Sbjct: 349 PAAARGDQVPSAVKIERAHMLEALGAELRAQDRASRAGTVELALVESHARAT------TE 402

Query: 434 WLQSVVLNSKNHNIGDIIKV 453
               V    +  N GD+++V
Sbjct: 403 SYYGVPAP-EGANAGDLVEV 421


>gi|229815230|ref|ZP_04445566.1| hypothetical protein COLINT_02276 [Collinsella intestinalis DSM
           13280]
 gi|229809240|gb|EEP45006.1| hypothetical protein COLINT_02276 [Collinsella intestinalis DSM
           13280]
          Length = 427

 Score =  299 bits (767), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 122/430 (28%), Positives = 200/430 (46%), Gaps = 27/430 (6%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V + GC++N  +S R+       G+  V   D+AD+IV+NTC +  +A  K    +    
Sbjct: 8   VVNLGCRVNRVESDRITSDLVGAGFSLV-DQDEADIIVINTCAVTGEAESKTRKAVRHAL 66

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
            L    I       VVV GCV      E+   SP V            P  ++ AR    
Sbjct: 67  GLPREPI-------VVVTGCVVNLHPSELTDLSPRV---------IAQPSKIDVARTAAD 110

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
                    +  E   + D     + G    + +Q+GC+  C++C+V   RG E S  ++
Sbjct: 111 AAGLPARTVNLGEGHDLADLLGRSRLG----VKVQDGCNNRCSYCIVWKARGPERSVPVA 166

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
            V+++ R+    G+ E+ L G N+ A+ G           +LL  + E   + ++R ++ 
Sbjct: 167 SVLEQVRRAERAGIPEVVLTGVNLGAYDGVDASDSHVEIDELLDIILEQTNIPQVRLSSL 226

Query: 269 HPRDMSDCLIKAH-GDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
            P D+ D LI A     + + P+LHLP+QSG    L+ MNR +TA +Y  ++DRIR+  P
Sbjct: 227 EPMDVHDRLIDAMVAGGERVAPFLHLPLQSGCTATLERMNRPYTAEQYEAMVDRIRTKLP 286

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
           + AIS D I GFPGETD++F  +  L +++G+++   F+YS R GTP +    QV   V 
Sbjct: 287 NAAISCDIIAGFPGETDEEFAESRALCERVGFSRMHVFRYSARPGTPAATAPGQVAPEVM 346

Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNI 447
           A R   L+        +   A +G     ++E   +       R      +V ++     
Sbjct: 347 AARSSELRHVAESTSQADARARIGACETAVLEFGNRGTLGSFHR-----VIVDDAGTDRT 401

Query: 448 GDIIKVRITD 457
           G +++V+IT 
Sbjct: 402 GQLVRVKITG 411


>gi|12003025|gb|AAG43441.1|AF186181_1 slr0082 [Synechococcus sp. PCC 7002]
          Length = 317

 Score =  299 bits (767), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 100/305 (32%), Positives = 164/305 (53%), Gaps = 7/305 (2%)

Query: 168 GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITL 227
             Y       A+L + EGCD  C FC++P+ RG + SR +  +V EA++L + GV EI L
Sbjct: 14  PRYRTTNEAVAYLRVAEGCDYRCAFCIIPHLRGDQRSRPIESIVAEAKQLAEQGVQEIIL 73

Query: 228 LGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL 287
           + Q +    GK + G K   ++LL +L  +  +  +R   ++P  ++  +I A  D   +
Sbjct: 74  ISQ-ITTNYGKDIYG-KPKLAELLRALGGVD-VPWIRIHYAYPTGLTPEVIAAMRDTPNV 130

Query: 288 MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDF 347
           +PYL LP+Q     IL++MNR        +II+ ++   PD  + + FIVGFPGET++ F
Sbjct: 131 IPYLDLPLQHSHPDILRAMNRPWQGRVNDRIIEDLKKALPDAILRTTFIVGFPGETEEHF 190

Query: 348 RATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFND 407
           +  +D V +  +     F +S   GTP  ++  Q+ ++VK  R   L +  +      N+
Sbjct: 191 QHLVDFVKRHEFDHVGVFTFSAEEGTPAIDLPNQLPQSVKDSRRDALMEIQQPIAARRNE 250

Query: 408 ACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVLNSKNHNIGDIIKVRITDVKISTL 463
            CVGQ ++VLIE+     G+L+GRS    P +  +V  +   ++G I+ V+IT   I  L
Sbjct: 251 LCVGQTVDVLIEQENPATGELIGRSPRFAPDVDGLVYVTGEASLGSIVPVQITAADIYDL 310

Query: 464 YGELV 468
           YG +V
Sbjct: 311 YGTIV 315


>gi|283853643|ref|ZP_06370877.1| MiaB-like tRNA modifying enzyme YliG [Desulfovibrio sp. FW1012B]
 gi|283570976|gb|EFC19002.1| MiaB-like tRNA modifying enzyme YliG [Desulfovibrio sp. FW1012B]
          Length = 432

 Score =  299 bits (767), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 129/452 (28%), Positives = 192/452 (42%), Gaps = 31/452 (6%)

Query: 23  VPQ--RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKV 80
           +P+  +    S GC  N  D+         +    V+    ADL+V+NTC     A E+ 
Sbjct: 1   MPKTYKVHAISLGCPKNRVDTEVALGGLPFRT-TPVDDPRAADLVVINTCSFIGPAVEES 59

Query: 81  YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140
              +  I     +         + V GC+    GE++ R  P V+V   P     LP   
Sbjct: 60  ---VAAILEAAEAIRDLSPRPKLAVMGCLPARFGEDLRRGLPEVDVWGLPTELDILP--- 113

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
                G+          D   RL+     Y       A+L I EGCD  C +C +P  RG
Sbjct: 114 -----GRLAEALGAEAADPTGRLASTPPSY-------AYLKIAEGCDHACRYCTIPSIRG 161

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
             +SR L  +V+EAR L+D GV E+ ++ Q+V A  G+ L G K     LL  L  + GL
Sbjct: 162 GLVSRPLPGLVEEARGLLDRGVSELVVVAQDVTA-YGRDL-GLKDGLQALLEKLLPLSGL 219

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDV-LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
             LR    +P  ++D L+          +PY  +P Q     +L +M R   A +   ++
Sbjct: 220 KWLRLLYLYPSGVTDGLLSFLAGAGRPFVPYFDIPFQHVHPEMLAAMARP-KAADADTVV 278

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            R+R   PD A+ S FIVG PGE  + F+A ++ V +        F Y    GTP + M 
Sbjct: 279 GRVRRHFPDAALRSTFIVGLPGEKKEHFQALLEFVQRARLTHVGVFPYHAEEGTPAAIMP 338

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRS----PW 434
            QV  +VKA R   +    +       D  VG   EVL++  HG+  G  VGR+    P 
Sbjct: 339 GQVRRDVKARRAAAVMAAQKAISADILDGYVGTDQEVLVDAVHGEWPGLHVGRTWFQAPE 398

Query: 435 LQSV-VLNSKNHNIGDIIKVRITDVKISTLYG 465
           +  V  ++      G ++   I + K   L  
Sbjct: 399 IDGVTYVSGPGVKPGAMVTASIEEAKDYDLVA 430


>gi|18313702|ref|NP_560369.1| hypothetical protein PAE2939 [Pyrobaculum aerophilum str. IM2]
 gi|18161255|gb|AAL64551.1| conserved hypothetical protein [Pyrobaculum aerophilum str. IM2]
          Length = 416

 Score =  299 bits (767), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 122/454 (26%), Positives = 208/454 (45%), Gaps = 50/454 (11%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ +V++YGC +   D+  +       G E  ++++++D++++ TC +RE    +  + +
Sbjct: 2   RKVYVETYGCWLAKADAEILRQRL---GLELASNVEESDVVLIYTCAVREDGEVRQLARI 58

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             +                +VAGC+A+     I   +P   ++         P+ +E   
Sbjct: 59  RDLAKSGREM---------IVAGCLARLRPYTIKSLAPGAALI--------YPQQVEGGP 101

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI--- 201
             +  +  ++S                   GV   + +Q GC   CTFC   YTRG    
Sbjct: 102 EREMKILPEFS------------------GGVVYTVPLQVGCLGNCTFCATKYTRGGAGY 143

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS-LSEIKGL 260
             S    +VV + +K +  G  EI L GQ+V  +  +          DLL   L E+ G 
Sbjct: 144 VKSADPEEVVRKVKKAVAMGAREIYLTGQDVITYGFEMRWKRGWNLPDLLERILKEVDGE 203

Query: 261 VRLRYTTSHPRDMS---DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
            R+R   S P       D ++        +  Y HLPVQSGSD++L+ M R++T  EYR+
Sbjct: 204 YRIRIGMSEPWVFEKFADQILDVVKRDRRVYRYFHLPVQSGSDKVLRVMGRKYTVDEYRE 263

Query: 318 IIDRIRSVRPDIA-ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
           ++ +IR V  +   I++D IVGFPGE ++DF AT+ L +++ + +    ++SPR  T  +
Sbjct: 264 LVRKIRRVLGETTFIATDIIVGFPGEEEEDFWATVKLAEELQFDKIHVARFSPRPFTEAA 323

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQ 436
            M +QV +  K  R   L +   +     N   VG   EVLI++   + G +VGR+   +
Sbjct: 324 VMPKQVPDVEKKRRSKALSEISLKIAHVRNGLRVGTKDEVLIDEI--DHGLVVGRASDYR 381

Query: 437 SVVLNSKNH--NIGDIIKVRITDVKISTLYGELV 468
            VV+    H   +G    VRI       LY E++
Sbjct: 382 QVVVKRGTHRELLGKFTNVRIVAAGPIYLYAEVI 415


>gi|124485405|ref|YP_001030021.1| hypothetical protein Mlab_0580 [Methanocorpusculum labreanum Z]
 gi|124362946|gb|ABN06754.1| MiaB-like tRNA modifying enzyme [Methanocorpusculum labreanum Z]
          Length = 416

 Score =  299 bits (766), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 120/446 (26%), Positives = 208/446 (46%), Gaps = 50/446 (11%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
            + ++YGC  N  D+ ++ ++  +QG    +S ++AD I++NTC + +K  + +Y  L  
Sbjct: 17  LYTETYGCTYNAGDTEKLMEIARNQGCVPASSAEEADAILINTCVVIDKTEQHMYERLDL 76

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
                          L+ V GC+     + +  R P ++++  P   +     +  A  G
Sbjct: 77  YA-----------GKLLFVTGCLPPVAADVLRTRYPKIHII-DPALIHSCYMEVGTAHVG 124

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
                                          A L I  GC+  CT+C+    RG  +S S
Sbjct: 125 -----------------------------TNAVLQIARGCNGHCTYCITRLARGKLVSFS 155

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
              +V +A+ +++ G  EI L  Q+ ++W     DG +    DLL  L  I G   +R  
Sbjct: 156 AEDIVRQAKSIVEAGATEIQLTAQDTSSWGLDRNDGLR--LPDLLRQLCAIPGNFMIRIG 213

Query: 267 TSHPRDMSDCL---IKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
            ++P  +   L   + A  D   +  +LH+PVQSGSD +L+ M RR+T+ +Y +I  R R
Sbjct: 214 MANPDTLLPILDDFLDALKD-PKIFLFLHIPVQSGSDSVLRLMGRRYTSAQYEEICQRAR 272

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              P+I IS+D+I GF GETD+D   + + + +    +    ++S R  TP + M +++ 
Sbjct: 273 KAFPEIRISTDYIAGFSGETDEDAAKSAEQIRRTRPGKVNITRFSVRPNTPAAKM-KKIP 331

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
           E +K +R   L     E   + N+A +G I+  ++ +  K  G +  R    Q++V+  +
Sbjct: 332 EPIKKQRSRELTDAANEVYDANNEALIGHIMTAVVTEVVK-AGSVTARDRTYQNIVI-ME 389

Query: 444 NHNIGDIIKVRITDVKISTLYGELVV 469
           N  IG  I V+IT  +   L GE +V
Sbjct: 390 NLEIGTEITVKITGHRRHYLIGERIV 415


>gi|320536506|ref|ZP_08036537.1| MiaB-like tRNA modifying enzyme YliG [Treponema phagedenis F0421]
 gi|320146646|gb|EFW38231.1| MiaB-like tRNA modifying enzyme YliG [Treponema phagedenis F0421]
          Length = 485

 Score =  299 bits (766), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 122/498 (24%), Positives = 205/498 (41%), Gaps = 65/498 (13%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + ++FF+  +GC  N  D   +  +   +G+ R  S + AD+I++N+C   E A  +   
Sbjct: 1   MTKQFFLDQHGCAKNQVDGELLIGILQQEGWVRAKSAETADIIIVNSCGFIEAAKLESIE 60

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +   R+          +  +++AGC+A+   EE  +  P  +   G     +LP+++ +
Sbjct: 61  AVISARS-------RYPNAKILLAGCLAERYAEEFQQELPEADAFFGNGDLSQLPKIVHQ 113

Query: 143 ARFG-KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
                K+        E K     I     N  R V  F+ I EGC+  C+FC +P  RG 
Sbjct: 114 MITNTKKDYRPALVPEQKGISCGIRPEILNFPRSV--FIKITEGCNHRCSFCAIPLIRGN 171

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK--------------------GLD 241
             SR +   V E ++ I +G  E  L+GQ++ A++G                        
Sbjct: 172 LRSRPIEDCVQEIQQFIKSGCYEFNLIGQDLAAFQGSKKTAYNFGTKPQGSIKSIEQTFP 231

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
            ++   ++LL ++S ++G  R+R    HP +    ++         +PY  LP QSGS  
Sbjct: 232 KKQSGLAELLQAISALEGDFRVRLLYIHPDNFPLDILPIMTQDSRFLPYFDLPFQSGSAN 291

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDI-------AISSDFIVGFPGETDDDFRATMDLV 354
           IL  MNRR +A +Y ++ D IR+               + F+ GFPGETD DF  T D +
Sbjct: 292 ILHLMNRRGSAEKYLELADTIRNAFRKAKSPYKTTVFRTTFLTGFPGETDFDFEQTEDFL 351

Query: 355 DKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVG--- 411
             +    + +F +S   GT   ++  QV + +  +RL  LQ    E          G   
Sbjct: 352 TNLKSLWSGAFVFSKEEGTKAEHLPAQVPKKLAEKRLRILQDLQTEITQESLQFFCGYET 411

Query: 412 ------QIIEVLIEKHGKEKGKLVGR----SPWLQSVVL----------NSKNHNIGDII 451
                  I    I+   K     +GR    +P +   ++          +      G II
Sbjct: 412 DILIEEIIENAEIDGDSK---VAIGRAWFQAPEVDGAIVVNYTDEQRDRSGNPFAPGSII 468

Query: 452 KVRITDVKISTLYGELVV 469
           K +I   +   L  E V 
Sbjct: 469 KAKIIAPRGFDL--EAVA 484


>gi|163743347|ref|ZP_02150727.1| MiaB-like tRNA modifying enzyme [Phaeobacter gallaeciensis 2.10]
 gi|161383341|gb|EDQ07730.1| MiaB-like tRNA modifying enzyme [Phaeobacter gallaeciensis 2.10]
          Length = 421

 Score =  299 bits (766), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 125/438 (28%), Positives = 200/438 (45%), Gaps = 43/438 (9%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
            P+     + GC++N Y++  M+++    G +        + +V+NTC +  +A  K   
Sbjct: 4   APK---FTTLGCRLNAYETEAMKELSQQAGLQ--------NAVVVNTCAVTAEAVRKARQ 52

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGP---------QTY 133
            + ++R       +E  D  ++V GC AQ E E        V  V+G          Q  
Sbjct: 53  EIRKLR-------RENPDAPIIVTGCAAQTEPETFAA-MDEVTQVIGNTEKMQAQTWQQI 104

Query: 134 YRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC 193
            + P+ +      K  VD   SV +    L  +DG   R R   A++ +Q GCD  CTFC
Sbjct: 105 AKGPDFIGATE--KVQVDDIMSVTETAGHL--IDGFGTRSR---AYVQVQNGCDHRCTFC 157

Query: 194 VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS 253
           ++PY RG   S     VVD+ ++L+D G  E+ L G ++ +W G  L         ++  
Sbjct: 158 IIPYGRGNSRSVPAGVVVDQIKRLVDRGYNEVVLTGVDLTSW-GADLPATPKLGDLVMRI 216

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
           L  +  L RLR ++    ++ D L++A      LMP+LHL +Q G D ILK M RRH   
Sbjct: 217 LKLVPDLPRLRISSIDSIEVDDNLMQAIATEPRLMPHLHLSLQHGDDLILKRMARRHLRD 276

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
           +  +  +  R +RP++   +D I GFP ETD  F  ++ LV          F YS R GT
Sbjct: 277 DAIRFCEEARKLRPEMTFGADIIAGFPTETDAHFENSLKLVSDCDLTWLHVFPYSKREGT 336

Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSP 433
           P + +  QV+ ++  ER   L+     Q  +   A VG+  ++L+E         +GR+ 
Sbjct: 337 PAARIPSQVNGSLIRERAARLRAAGDAQVQTHLTAAVGKAHQILMENP------HMGRTE 390

Query: 434 WLQSVVLNSKNHNIGDII 451
               V   +     G I+
Sbjct: 391 QFTEVTFAAPQIE-GQIV 407


>gi|307718563|ref|YP_003874095.1| hypothetical protein STHERM_c08730 [Spirochaeta thermophila DSM
           6192]
 gi|306532288|gb|ADN01822.1| hypothetical protein STHERM_c08730 [Spirochaeta thermophila DSM
           6192]
          Length = 449

 Score =  299 bits (766), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 137/463 (29%), Positives = 210/463 (45%), Gaps = 37/463 (7%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           +       + GC++N Y++  +   F   GY         DL ++NTC +  K+ +K   
Sbjct: 1   MKPVVVFYTLGCKLNQYETEGIAAAFREAGYRIGEFPQSGDLYIVNTCTVTSKSEQKARR 60

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGP------------ 130
            + +I        +E  + LVVV GC  Q E +E+   S  V  +               
Sbjct: 61  IIRKIA-------REHPEALVVVTGCYPQLERDEVQALSDRVIALPLEEKPLLLQLPSRL 113

Query: 131 QTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190
           Q     P  +ER     R          +F         + R     +FL IQ+GCD+ C
Sbjct: 114 QDEDLDPSRVERLLQEIRTQAPLDGTAGRFLYRVDRPAFHAR-----SFLKIQDGCDRRC 168

Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDL 250
            +C VP  RG  +S   +++++  ++L   GV EI L G N+  +R      E      L
Sbjct: 169 AYCRVPLARGRAVSDDPARILERVQELEGRGVREIVLTGVNLAQYRW-----ESLDLGGL 223

Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
           L  L      +R R ++  P   S+ L +A      + P+ HLPVQSGS+R+LK M R +
Sbjct: 224 LLHLLSHTSRLRFRISSLEPEGFSEALWEAL-SSPRICPHFHLPVQSGSNRVLKRMGRWY 282

Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370
           TA E   +I R+R V PD  IS DFIVGFPGET +DF AT   +D+  ++ A  F+YSPR
Sbjct: 283 TAEEISALIARLREVSPDPFISGDFIVGFPGETREDFEATCAFLDENAFSGAHLFRYSPR 342

Query: 371 LGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK--L 428
            GT        V E V  ER   L   +     ++     G+++EV+ E+  ++ G+   
Sbjct: 343 PGTAAYASKAHVPERVAKEREEALHACVEVYASAYLARQRGRVVEVIPEQEREKAGQRYA 402

Query: 429 VGRSPWLQSVVLNSKNHNIGDIIKVRITDV---KISTLYGELV 468
           VG S     V   +     G+ ++V + DV   +  ++YG  V
Sbjct: 403 VGTSENYLLV--WAPVPLEGETVRVEVGDVVEGEPRSVYGSPV 443


>gi|242310194|ref|ZP_04809349.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489]
 gi|239523491|gb|EEQ63357.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489]
          Length = 443

 Score =  299 bits (766), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 102/459 (22%), Positives = 206/459 (44%), Gaps = 32/459 (6%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + ++  + S GC  N+ DS  M        YE    + +AD++++NTC   E A  +   
Sbjct: 1   MSKKLHLISLGCTKNLVDSEVMLGKLSE--YENTQEIKEADVVIVNTCGFIEAAKTESIQ 58

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +    N K        + ++V +GC+++   +E+    P ++++ G   Y ++  ++E+
Sbjct: 59  TILEALNNKKE------NAILVASGCLSERYAKELKEEIPEIDIITGVGDYDKIDLMIEK 112

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            + G++++     V    E    +  G      + A++ + EGC++ C+FC +P  +G  
Sbjct: 113 RKKGEKILSNANGVFLANENDKRIISGSK----IHAYIKLSEGCNQKCSFCAIPSFKGKL 168

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK---- 258
            SR+L   + E + L   G  + T + Q+ ++   + L G K    DL+  + ++     
Sbjct: 169 HSRTLESTLKEVQNLAQKGFSDFTFISQD-SSSYLRDL-GIKDGLVDLVKGIDKLAKEGI 226

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           G+   R    +P   S  LI+   D  +   Y  +P+Q  S ++LK M R     E++++
Sbjct: 227 GIKSARILYLYPATTSKKLIQTIIDSPIFHNYFDMPLQHISQKVLKQMGRGG---EFKEL 283

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           ++ +R   P+  + + FI+G PGE + DF    + V+K  + +   F YS   GT  + M
Sbjct: 284 LEMMRQA-PNSFVRTSFIIGHPGEEESDFVELCEFVEKFHFDRINFFAYSKEEGTKSAKM 342

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG-----RSP 433
            EQ+       RL  + +  ++Q          + +  ++E +  E            +P
Sbjct: 343 -EQIPNKTINARLKKINQIFQKQYRQSLKNLKNKELLCIVEGNSSEHEFFYAARDIRFAP 401

Query: 434 WLQSVVLNSK---NHNI-GDIIKVRITDVKISTLYGELV 468
            +   +L +    +  I     KV+IT++    + G +V
Sbjct: 402 QIDGEILINDKTIDETIQNGYYKVKITEILGEDIIGCIV 440


>gi|114766736|ref|ZP_01445674.1| MiaB-like tRNA modifying enzyme [Pelagibaca bermudensis HTCC2601]
 gi|114541055|gb|EAU44111.1| MiaB-like tRNA modifying enzyme [Roseovarius sp. HTCC2601]
          Length = 417

 Score =  299 bits (765), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 122/440 (27%), Positives = 191/440 (43%), Gaps = 38/440 (8%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
            P+     + GC++N Y++  M+ +    G          D +V+NTC +  +A  K   
Sbjct: 3   APK---FTTLGCRLNAYETEAMKALAEEAGV--------GDAVVVNTCAVTAEAVRKARQ 51

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            + R+R       +E  +  V+V GC AQ + +        V+ V+G             
Sbjct: 52  EIRRLR-------RENPEARVIVTGCAAQIDPDSFAA-MDEVDAVIGNSEKMSPDTWAGL 103

Query: 143 A-----RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197
           +        K  V+   SV +    L  +DG   R R   A++ +Q GCD  CTFC++PY
Sbjct: 104 SNGFIGETEKVQVNDIMSVTETAGHL--IDGFGTRSR---AYVQVQNGCDHRCTFCIIPY 158

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257
            RG   S     VVD+ ++L+  G  E+ L G ++ +W G  L G       ++  L  +
Sbjct: 159 GRGNSRSVPAGVVVDQIKRLVQKGYNEVVLTGVDLTSW-GADLPGTPRLGDLVMRIL-RL 216

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
             + RLR ++    +  D L+ A      LMP+LHL +Q G D ILK M RRH   +  +
Sbjct: 217 TDVPRLRISSIDSIEADDNLMLAIASEPRLMPHLHLSLQHGDDLILKRMKRRHLRDDAIR 276

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
             +  R +R DI   +D I GFP ET+  F  ++ LV++        F YS R GTP + 
Sbjct: 277 FTEEARRLRADITFGADIIAGFPTETEAHFENSLKLVEECSLTWLHVFPYSSRPGTPAAK 336

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQS 437
           +  +VD N    R   L+            A  G    +L+E         +GR+     
Sbjct: 337 IPSKVDGNTIKARAARLRAAGEAAVSRHLAAQQGVTHRILMENP------TMGRTEQFTE 390

Query: 438 VVLNSKNHNIGDIIKVRITD 457
           V L++     G I+   IT 
Sbjct: 391 VDLSTPQTE-GAIVTATITG 409


>gi|282163181|ref|YP_003355566.1| putative 2-methylthioadenine synthetase [Methanocella paludicola
           SANAE]
 gi|282155495|dbj|BAI60583.1| putative 2-methylthioadenine synthetase [Methanocella paludicola
           SANAE]
          Length = 406

 Score =  299 bits (765), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 118/445 (26%), Positives = 202/445 (45%), Gaps = 44/445 (9%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + +++++GC  N  DS  + +   + G E V + ++AD +V+NTC + E  ++ +   + 
Sbjct: 2   KIYIETHGCTANASDSQAIRNSVLASGGEVVGTPEEADTVVVNTCAVTEFTSKSMLKAI- 60

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                     K+     VVVAGC+A A+                          L +   
Sbjct: 61  ----------KKYSGKRVVVAGCMAAAQP------------------------YLLKGIR 86

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
             ++ +   +         +   G    +G +A ++I EGC   C++C+V   RG   S 
Sbjct: 87  NIQIAEAPGAEAVARMLGIMPAAGRPFIKGTSAVVSIAEGCRGHCSYCIVRLVRGPLRSA 146

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            + +VV   +  +  G  EI L  Q+  A+   GLD  +     L+  +  I+G  R+R 
Sbjct: 147 PVEEVVHSIKTALRMGAREILLTAQDTGAY---GLDAGE-RLPALMKEILSIEGDYRIRL 202

Query: 266 TTSHPRDMSDCL--IKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
              +P  ++D L  +    +   +  + H+PVQSGSDRIL  M R +T  +YR I+ R+R
Sbjct: 203 GMMNPFSIADILGDMARIFNDPRVYRFAHIPVQSGSDRILGLMERPYTESQYRDIVARLR 262

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              P I +S+D+IVGFP ETD+DF  TMD +      +    ++SPR GTP + M   + 
Sbjct: 263 QEVPGITLSTDYIVGFPTETDEDFALTMDDLRSTRPLKVNITRFSPRPGTPAACMEN-LP 321

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
             +K ER   L +        +     G+ + VL+ + GK  G  V R      VV+  +
Sbjct: 322 FRIKKERSRALTQLHHGITSEYMRDSAGRRLSVLVTEEGK-PGTSVARDDCYHMVVIP-E 379

Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468
             + G  + V+I     + + G+ +
Sbjct: 380 EISPGTRLDVKICGASTTYMVGKPI 404


>gi|194335608|ref|YP_002017402.1| MiaB-like tRNA modifying enzyme [Pelodictyon phaeoclathratiforme
           BU-1]
 gi|194308085|gb|ACF42785.1| MiaB-like tRNA modifying enzyme [Pelodictyon phaeoclathratiforme
           BU-1]
          Length = 453

 Score =  299 bits (765), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 115/461 (24%), Positives = 202/461 (43%), Gaps = 32/461 (6%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++    + GC++N  ++  + D    +G+   +  + ADLI+++TC + ++A +K    +
Sbjct: 7   KKVAAVTLGCKLNYAETSTILDQLSKKGWLLSSIGERADLIIIHTCAVTKQAEQKCRQKI 66

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG---PQTYYRLPELLE 141
             I+       ++     + V GC +Q   E +      ++ ++G        R  ++L 
Sbjct: 67  RAIK-------RKNPSSKIAVIGCYSQFNPEAL-SAIDGIDAILGSNDKFDIKRYEDILL 118

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
                  V  T  +  +K      +    + +R   AFL IQ+GCD  C++C +P  RG 
Sbjct: 119 GTEPSPLVRVTPANTIEKVYPGYSLPAAASCER-TRAFLKIQDGCDNGCSYCAIPLIRGG 177

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
             S   + +V+ A  L  +G  EI L G N   +R  GL        +LL  L E+    
Sbjct: 178 SRSLPAAHIVERAHLLASSGYREIVLTGVNTGDYRSGGLK-----LKELLRMLEEVSISR 232

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
            +R ++  P  +   LI        ++P+ H+P+QSGSDRIL++M R +    YR  +  
Sbjct: 233 -IRISSIEPDIVDRELIALVAGSKKIVPHFHIPLQSGSDRILRAMRRHYDTALYRDRVLM 291

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS----- 376
                 D AI +D +VG+PGET++DF      ++++  A    F  S R GT  +     
Sbjct: 292 SVENIADCAIGADVMVGYPGETEEDFLKMYHFIEELPLASLHVFSCSIRPGTRLALQITN 351

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGK--LVGRSP 433
           +  + V+    A R   L +  R  +  F     G+   VLIE+    E G+    G + 
Sbjct: 352 SERKPVESAEIARRYSELAELGRRHEARFKARYTGKECMVLIERSKPVEAGQPAYSGYTR 411

Query: 434 WLQSVVLNSKNH-----NIGDIIKVRITDVKIS-TLYGELV 468
               V++ S          G+ + VRI  +     L G ++
Sbjct: 412 NYLRVLVESNESQLQHTLPGNEVPVRIDSLDEDLNLKGRVL 452


>gi|158521760|ref|YP_001529630.1| MiaB-like tRNA modifying enzyme [Desulfococcus oleovorans Hxd3]
 gi|158510586|gb|ABW67553.1| MiaB-like tRNA modifying enzyme [Desulfococcus oleovorans Hxd3]
          Length = 451

 Score =  299 bits (765), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 123/452 (27%), Positives = 209/452 (46%), Gaps = 20/452 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + F +K+ GC++N ++S  +     S+G+   ++   ADL ++NTC +  + A +    L
Sbjct: 2   KSFIIKTLGCKVNQFESEAIAAALISEGWCLADAGGPADLCIVNTCTVTSRGAMQSRQLL 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
                      +E    +V+  GC A    EE+   +  V+ +V     YR+PE +    
Sbjct: 62  -------RRLRREHPFAMVLATGCHATLNAEELAA-TGAVDCIVYHCAKYRIPETVRSME 113

Query: 145 F-----GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
                 G   +       D F RLS       R R   AFL IQ+GC+ FC +C+VP+ R
Sbjct: 114 DAFTPGGPVRIVDQGERRDLFTRLSPAAVTGFRTR---AFLRIQDGCNAFCAYCIVPHAR 170

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G  +S +  +V+     L  +G  E+ L G ++    G  L     +  +LL ++   + 
Sbjct: 171 GPSVSMTPDRVMAALAALDADGRREVVLAGIHLG-LYGADLSPS-VSLLELLTTVVRRRL 228

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           + RLR ++  P +++D L+      D++  + HLP+QSGS+ +L  M R +TA  Y   +
Sbjct: 229 VSRLRLSSIEPCELTDDLLDLAAGTDMICDHFHLPLQSGSNDVLGRMGRPYTAEVYADRV 288

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
             +R   P  AI +D +VGFPGET   F  T  LV+ +  +    F +S R GT  + M 
Sbjct: 289 AAVRKRVPHAAIGADVLVGFPGETAALFEETFCLVETLPVSYLHVFPFSSRPGTRAAAMD 348

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSV 438
             V       R   L+    E++  F      +++  L+E+   ++ G L   S    SV
Sbjct: 349 NPVPAEEIKSRCARLRNLGAEKKRIFCQNNYERMVPALVEETPDRKTGLLKAVSTNYLSV 408

Query: 439 VLNSKNHNIGDIIKVRITD-VKISTLYGELVV 469
           ++       G ++ VRI + V+   + GE+  
Sbjct: 409 LVKGPEALRGQLVNVRIGEQVEGLQVKGEIAT 440


>gi|225389119|ref|ZP_03758843.1| hypothetical protein CLOSTASPAR_02865 [Clostridium asparagiforme
           DSM 15981]
 gi|225044818|gb|EEG55064.1| hypothetical protein CLOSTASPAR_02865 [Clostridium asparagiforme
           DSM 15981]
          Length = 378

 Score =  299 bits (765), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 121/342 (35%), Positives = 195/342 (57%), Gaps = 20/342 (5%)

Query: 12  HMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCH 71
             +S        P    + ++GCQMN  DS ++  +  S GY+  +S + AD ++ NTC 
Sbjct: 35  KQLSAFSAALGRPLTCCINTFGCQMNARDSEKLLGILESIGYKATDS-EHADFVLYNTCT 93

Query: 72  IREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVG 129
           +RE A ++VY  LG++   K    K+   +++ + GC+ Q     E I      V+++ G
Sbjct: 94  VRENANQRVYGRLGQLGAYK----KKNPHMMIALCGCMMQEPEVVERIKTSYHFVDLIFG 149

Query: 130 PQTYYRLPELL------ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQ 183
               ++L EL+       + +  + V+D     +   E L +      RK    + + I 
Sbjct: 150 THNIFKLAELVSTCLDTRQGKKHRTVIDIWKDTDKIVEDLPV-----ERKYPFKSGVNII 204

Query: 184 EGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
            GC+ FC++C+VPY RG E SR   +++ E ++L  +GV EI LLGQNVN+  GK L+ E
Sbjct: 205 FGCNNFCSYCIVPYVRGRERSRRPEEILKEVKRLAADGVVEIMLLGQNVNS-YGKNLE-E 262

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
             TF+ LL  + +I G+ R+R+ TSHP+D+SD LI+       +  +LHLP+QSGS RIL
Sbjct: 263 PMTFAQLLREVEKIDGIERIRFMTSHPKDLSDELIEVMSQSKKICRHLHLPLQSGSSRIL 322

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDD 345
           K MNRR+T  +Y  + ++I++  P I++++D IVGFPGET++
Sbjct: 323 KEMNRRYTKEQYLTLAEKIKAAVPGISLTTDIIVGFPGETEE 364


>gi|117928706|ref|YP_873257.1| MiaB-like tRNA modifying enzyme YliG [Acidothermus cellulolyticus
           11B]
 gi|238065272|sp|A0LV11|RIMO_ACIC1 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|117649169|gb|ABK53271.1| SSU ribosomal protein S12P methylthiotransferase [Acidothermus
           cellulolyticus 11B]
          Length = 475

 Score =  299 bits (765), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 114/475 (24%), Positives = 185/475 (38%), Gaps = 42/475 (8%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
              +   +   GC  N  D+  +       G+    +   AD+ V+NTC   E A ++  
Sbjct: 2   PASRTVRLIRLGCARNDVDAEELAARLVDAGWRLTEAPS-ADVTVVNTCGFIEAAKQESI 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             L    +         G   VV  GC+A+  G  +    P    ++    Y  + + LE
Sbjct: 61  DTLLEAAD---------GSTRVVAVGCLAERYGAALADAMPEAT-ILSFDDYPVIAQRLE 110

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRK---------------------RGVTAFL 180
               G+      ++  D+   L +      R                          A L
Sbjct: 111 DVLAGRPP--APHTPRDRRTLLPLTPVDRPRAAAEVGIPGHLGGPRVLRHRLDDSPVAPL 168

Query: 181 TIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL 240
            I  GCD+ CTFC +P  RG  +SR  + ++ EA+ L D+G  EI L+ +N  +  GK L
Sbjct: 169 KIASGCDRRCTFCAIPSFRGAFVSRPPADILREAQWLADHGAREIVLVSENSTS-YGKDL 227

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300
            G+      LL +   + GLVR+R T   P ++   LI        + PY  L  Q  S 
Sbjct: 228 -GDPFALEKLLAAFGGVDGLVRVRVTYLQPAEVRPALIDVIATAPHVAPYFDLSFQHASP 286

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
           R+L+ M R   + E+  ++  IR   P  A+ S+ IVGFPGET++D     + +      
Sbjct: 287 RVLRRMRRFGGSEEFLNLLAEIRRRNPRAAVRSNVIVGFPGETEEDVAELGEFLRAARLD 346

Query: 361 QAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
               F YS   GT  S   E++ E     R+  +     E       A +G+ ++VLI+ 
Sbjct: 347 GIGVFGYSDEDGTEASGFPEKIPEQEIRSRVDDIAGIAEEVTADRARARLGETVDVLIDG 406

Query: 421 HGKE-KGKLVGRSP----WLQSV-VLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
              +      G +      +  V VL   +   G +++  I ++         V 
Sbjct: 407 VDDDRPDACYGYTEVQAVDVDGVTVLRDCSAARGALVRAEIVEIDGVDFLAAPVT 461


>gi|46203010|ref|ZP_00052227.2| COG0621: 2-methylthioadenine synthetase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 410

 Score =  299 bits (765), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 122/435 (28%), Positives = 194/435 (44%), Gaps = 32/435 (7%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           ++GC++N  +S  +     +          + DL+V+NTC +  +A  +    + R+   
Sbjct: 7   TFGCRLNTVESEVLRGHAEA-------DARERDLVVVNTCAVTAEAGRQARKAIRRLA-- 57

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
                +E     +VV GC A+ E        P V  +VG     +          G  V 
Sbjct: 58  -----RERPGAEIVVTGCGAEVERGA-YAAMPEVARLVGNAVKLKPESW-----RGASVP 106

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
           +    +  +    + + G     R   AF+ +Q GCD  CTFCV+P+ RG   S  ++  
Sbjct: 107 EAADIMAVRAAEPTRIAGMSGHTR---AFVPVQNGCDHRCTFCVIPFGRGNSRSVPVADA 163

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270
           V + R+++++G  E+ L G ++ A  G+ LD E      +   L E+  L RLR ++   
Sbjct: 164 VAQVRRIVEHGGREVVLTGVDLTA-YGRDLDAELTLGRLVRTILGEVPDLARLRLSSIDS 222

Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330
            +    LI A  +   LMP++HL +Q+G D ILK M RRH+  +  +I   +R +RP + 
Sbjct: 223 VEADAALIAAFAEEPRLMPHVHLSLQAGDDLILKRMKRRHSRADAIRICRTLRDLRPGLV 282

Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER 390
             +D I GFP ET+  F  ++DLV + G      F YSPR GTP + M   V  ++  ER
Sbjct: 283 FGADLIAGFPTETEAQFARSLDLVAECGLTHLHVFPYSPRPGTPAARMP-AVPGDIVRER 341

Query: 391 LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDI 450
              L++          D  VG    VL E+         GR+     V   S+    G+I
Sbjct: 342 AARLREAGTAALTRHLDGEVGARRRVLTERGD------TGRTEAFSLVRF-SEPVPAGEI 394

Query: 451 IKVRITDVKISTLYG 465
            +V IT      L  
Sbjct: 395 REVAITGHDGQALLA 409


>gi|86747486|ref|YP_483982.1| MiaB-like tRNA modifying enzyme [Rhodopseudomonas palustris HaA2]
 gi|86570514|gb|ABD05071.1| MiaB-like tRNA modifying enzyme [Rhodopseudomonas palustris HaA2]
          Length = 422

 Score =  298 bits (764), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 124/448 (27%), Positives = 186/448 (41%), Gaps = 46/448 (10%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
             + ++GC++N ++S  +       G            IV+N+C +  +A  +    + +
Sbjct: 3   VEIVTFGCRLNAFESEVIRREAEGAGLTET--------IVVNSCAVTNEAVAQARQSIRK 54

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA--- 143
           ++       +   D  +VV GC AQ E          V+ V+G     R     E     
Sbjct: 55  LK-------RARPDARIVVTGCAAQTEPATFAA-MDEVDRVIGNDDKIRTEAWREARAAF 106

Query: 144 ---------RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCV 194
                         V D     E     +     G  R      F+ +Q GCD  CTFC+
Sbjct: 107 DADAFGLGNEEKIAVADIMAVREMAPHLVDGYQSGLPRV-----FVQVQNGCDHRCTFCI 161

Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL 254
           +PY RG   S  +  VVD+ R L + G  EI L G ++ +  G  L G     + +   L
Sbjct: 162 IPYGRGNSRSVPVGAVVDQVRALAERGHAEIVLTGVDLTS-YGADLPGTPKLGTLVKKVL 220

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
             +  L RLR ++    +    L+ A    + LMP+LHL +Q+G D ILK M RRH   +
Sbjct: 221 RHVPELRRLRISSIDSIEADRDLLDALASEERLMPHLHLSLQAGDDLILKRMKRRHARQD 280

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
                D +R +RPDIA+ +D I GFP ETD  F+ ++DLV + G      F YS R GTP
Sbjct: 281 AIDFCDEVRRLRPDIALGADLIAGFPTETDAMFQRSLDLVAECGLTFLHVFPYSKRPGTP 340

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPW 434
            + M  Q+D  V  +R   L+            A +G    VLIE   +      GR+  
Sbjct: 341 AARMP-QLDGRVVRQRAAQLRAAGEAALQKRLAAEIGATRAVLIESAAQ------GRTEH 393

Query: 435 LQSVVLNSKNHNIGDIIKVRITDVKIST 462
              V +       GD   VR   ++   
Sbjct: 394 FIPVAIAG--VAPGD---VRTMAIRGHD 416


>gi|238063411|ref|ZP_04608120.1| MiaB tRNA modifying enzyme yliG [Micromonospora sp. ATCC 39149]
 gi|237885222|gb|EEP74050.1| MiaB tRNA modifying enzyme yliG [Micromonospora sp. ATCC 39149]
          Length = 515

 Score =  298 bits (764), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 114/487 (23%), Positives = 193/487 (39%), Gaps = 61/487 (12%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +R  + + GC  N  DS  +     + G++     + AD++V+NTC   EKA +     L
Sbjct: 30  RRVALLTLGCARNEVDSEELAARLHADGWQVTTDGEGADVVVVNTCGFVEKAKQDSIQTL 89

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
               +             VV AGC+A+  G E+    P    V+    Y  +   L+   
Sbjct: 90  LAAAD---------TGAKVVAAGCMAERYGRELAESLPEAQAVLSFDDYPDIAARLDAVV 140

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYN------------------------------RKR 174
            G+ +    ++  D+ E L +                                    R+R
Sbjct: 141 AGEAL--DAHTPRDRRELLPLTPVARRDSAVSLPGHGTSRAAVQTDEHTPAHLRQVLRRR 198

Query: 175 ---GVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQN 231
              G  A L +  GCD+ C FC +P  RG  +SR+  +++ EA  L   GV E+ L+ +N
Sbjct: 199 LDTGPVASLKLASGCDRRCAFCAIPAFRGAFVSRTPDELLAEAEWLAKTGVRELVLVSEN 258

Query: 232 VNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL 291
             +  GK L G+      LL  L+ I G+VR+R +   P +    L++A      +  Y 
Sbjct: 259 STS-YGKDL-GDPRALEKLLPQLAAIDGIVRVRASYLQPAETRPGLVEAIATTPGVAAYF 316

Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351
            L  Q  S+ +L+ M R  +   + +++   R++ P     S+FIVGFPGET  D    +
Sbjct: 317 DLSFQHSSEPVLRRMRRFGSTERFLELLAAARALAPQAGARSNFIVGFPGETRGDVEELV 376

Query: 352 DLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVG 411
             +          F YS   GT  + +  +V       R   L     E      +  +G
Sbjct: 377 RFLSAARLDAIGMFDYSDEDGTEAAGLPGKVSAATIKRRYDRLSALADELCSQRAEERLG 436

Query: 412 QIIEVLIEKHGKEKGKLVGR----SPWLQS---VVLNSKN------HNIGDIIKVRITDV 458
             +EVL++    + G + GR    +P +     +V  +           GD+++  +T  
Sbjct: 437 STVEVLVD--SVDDGVVEGRAAHQAPEVDGSTTLVAPADGGVDLAALRPGDLVRATVTAT 494

Query: 459 KISTLYG 465
           +   L  
Sbjct: 495 EGVDLIA 501


>gi|210612715|ref|ZP_03289430.1| hypothetical protein CLONEX_01632 [Clostridium nexile DSM 1787]
 gi|210151408|gb|EEA82416.1| hypothetical protein CLONEX_01632 [Clostridium nexile DSM 1787]
          Length = 298

 Score =  298 bits (764), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 113/280 (40%), Positives = 168/280 (60%), Gaps = 3/280 (1%)

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS 248
            C++C+VPY RG E SR+   ++ E   L+ +GV E+ LLGQNVN+  GK LD +  TF+
Sbjct: 20  SCSYCIVPYVRGRERSRNPKDIIREIEALVADGVMEVMLLGQNVNS-YGKNLD-DPMTFA 77

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
           +LL  + +I+GL R+R+ TSHP+D+SD LI+       +  +LHLPVQSGS  ILK MNR
Sbjct: 78  ELLQEIEKIEGLERIRFMTSHPKDLSDELIEVMRHSKKICKHLHLPVQSGSTEILKKMNR 137

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
            +T  +Y +++ +I+   PDI++++D IVGFPGET++DF  TMD+V K+ Y  AF+F YS
Sbjct: 138 HYTKEQYLELVRKIKEAVPDISLTTDIIVGFPGETEEDFLETMDVVKKVRYDSAFTFIYS 197

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGK 427
            R GTP + M EQ+ ++V   R   L K+++E   +      G    VL+E  +  +   
Sbjct: 198 KRTGTPAAIMEEQIPDDVVKGRFDRLLKEVQEISAAVCSVHEGTTQPVLVESMNDHDDSL 257

Query: 428 LVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
           + GR      V        IG I+ V + + K     GE+
Sbjct: 258 VTGRLSNNILVHFKGDESLIGKIVDVNLKECKGFYYLGEM 297


>gi|139439629|ref|ZP_01773042.1| Hypothetical protein COLAER_02069 [Collinsella aerofaciens ATCC
           25986]
 gi|133774970|gb|EBA38790.1| Hypothetical protein COLAER_02069 [Collinsella aerofaciens ATCC
           25986]
          Length = 310

 Score =  298 bits (764), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 127/307 (41%), Positives = 183/307 (59%), Gaps = 9/307 (2%)

Query: 168 GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITL 227
             ++R+    A++ I  GC+ FCT+C+VPY RG E SR   ++VDE   L+  GV EITL
Sbjct: 3   MPWHRETQYHAWVPIMTGCNNFCTYCIVPYVRGREKSRPFEEIVDEVTGLVRQGVREITL 62

Query: 228 LGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL 287
           LGQNVN+  G+ L G K  F+DLL ++ +  G+ R+ +T+SHP+D+    I A  +   +
Sbjct: 63  LGQNVNS-YGRDLFG-KPRFADLLRAVGD-TGVERIFFTSSHPKDLLPETIDAMAETPAV 119

Query: 288 MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDF 347
           MP LHL VQSGS RILK MNRR+T  +Y  ++DRIR+  PDIA+S+D IVGFPGET++DF
Sbjct: 120 MPQLHLAVQSGSTRILKEMNRRYTREDYLGLVDRIRNRMPDIALSTDIIVGFPGETEEDF 179

Query: 348 RATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFND 407
             T+ L + + YAQA++F YS R GTP + + +     V  ER   L K +      +N 
Sbjct: 180 EQTLSLAETVRYAQAYTFIYSKRAGTPAAEIDDPTPHEVILERFNRLVKVIETTAHEYNQ 239

Query: 408 ACVGQIIEVLIEKHGKEKG-KLVGRSPWLQSVVLN-----SKNHNIGDIIKVRITDVKIS 461
             +  ++  LIE   K+    L+G+SP  Q+V        S +  +G I+ V +   K  
Sbjct: 240 GELHTVVPALIEGTSKKNDAVLLGKSPKNQTVHAPIPEGYSIDQLVGKIVDVDVDVAKTW 299

Query: 462 TLYGELV 468
            L G +V
Sbjct: 300 YLSGSVV 306


>gi|150401611|ref|YP_001325377.1| MiaB-like tRNA modifying enzyme [Methanococcus aeolicus Nankai-3]
 gi|150014314|gb|ABR56765.1| MiaB-like tRNA modifying enzyme [Methanococcus aeolicus Nankai-3]
          Length = 449

 Score =  298 bits (763), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 119/465 (25%), Positives = 229/465 (49%), Gaps = 45/465 (9%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + F++ YGC +N  D+  + +     + +  VN++DDAD++V+NTC +R +   K+ S +
Sbjct: 7   KIFIEGYGCTLNTADTNIINNSIKKFKNFIIVNNLDDADIVVINTCVVRLETEHKMISRI 66

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             I++L            +V+AGC+ +A  ++  + +P  ++++ P+  + + +++    
Sbjct: 67  NYIKSLNK---------YIVIAGCMPKALKKKAEKINP--DILIMPKEAHLIGDIIYNYF 115

Query: 145 FGK--RVVDTDYSVEDKFERLSIVDGGYN---------------RKRGVTAFLTIQEGCD 187
                   + D  +ED  +   +     +               +   +   L I EGC 
Sbjct: 116 KNNIGNENNADNKIEDSMKCGELPHNQASSSGNYNDIDNKLTQLKPNNLIMPLPISEGCT 175

Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTF 247
             CT+C+V   RG   S +  +++++A++ +DNGV ++ +  Q+  A  G   +    T 
Sbjct: 176 GKCTYCIVKIARGRLASYNPDKIINKAKEFVDNGVKQMLITSQDT-ACYGFDKN---TTL 231

Query: 248 SDLLYSLSEIKGLVRLRYTTSHPRDMSD---CLIKAHGDLDVLMPYLHLPVQSGSDRILK 304
             LL  + +IKG   +R    H +++      LI  + D D +  + HLP+QSG D +L+
Sbjct: 232 PTLLNEICQIKGDFNIRIGMMHAKNVPMIIDELIDRYKD-DKITKFFHLPIQSGDDDVLR 290

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
           +M R +T  EY  I    +    D+  ++D IVGFP ET+D+F  T++L+ K+       
Sbjct: 291 AMKREYTVDEYMDIAMEFKRKIKDLNFNTDVIVGFPTETEDNFNNTIELLKKLKPDAIHG 350

Query: 365 FKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE 424
            KY+ R GT    + +QVD  ++ ER+  L K  +E  +  ++  VG+I+  LI    + 
Sbjct: 351 AKYTQRKGTEADRL-KQVDTKIRKERMKILDKLRKEFSLENHEKYVGKIMPCLIVGKNE- 408

Query: 425 KGKLVGRSPWLQSVVLNS-KNHNIGDIIKVRITDVKISTLYGELV 468
                G +   ++V   + ++  IG+  K++I +     LYGE++
Sbjct: 409 -----GITHNCKTVKFENCEDVKIGEFRKIKIKEALTFGLYGEII 448


>gi|11498846|ref|NP_070075.1| hypothetical protein AF1247 [Archaeoglobus fulgidus DSM 4304]
 gi|2649334|gb|AAB89997.1| conserved hypothetical protein [Archaeoglobus fulgidus DSM 4304]
          Length = 405

 Score =  298 bits (763), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 116/429 (27%), Positives = 213/429 (49%), Gaps = 31/429 (7%)

Query: 44  MEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLV 103
           M      +    ++S++DA+++++N+C + +    K    + R+ +LK    K      V
Sbjct: 1   MRGFLSGEF--ELSSVEDAEVVIINSCGVIDFTERK---IIRRMLDLKREGKK------V 49

Query: 104 VVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERL 163
           V+AGC+ +   E +     + +  + P     + + +  A  G+++    ++     ++ 
Sbjct: 50  VLAGCLTRISKEALS----VADSALSPDNLDMVVDAVYSALNGRKL----FTERRFIDKA 101

Query: 164 SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVC 223
                    +    A ++I EGC   C+FC   + RG   S S+  +V EA + +  G  
Sbjct: 102 EFSHLKCRLRENAIAIVSISEGCLGKCSFCATKFARGRLRSFSMDAIVREAERAVRAGYR 161

Query: 224 EITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD---MSDCLIKA 280
           EI L  Q+  A+   G+D  +    +LL  +SEI+G  R+R    +P+    M D LI A
Sbjct: 162 EIQLTSQDTGAY---GMDKGRAMLPELLRKISEIEGEFRVRVGMMNPQHAVRMLDELINA 218

Query: 281 HGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFP 340
           +   + +  +LH+PVQSG +RIL+ M R HT  +Y ++++  R+   D+ IS+D IVGFP
Sbjct: 219 Y-SSEKIYKFLHIPVQSGDNRILEDMKRNHTVEDYVEVVEAFRNSFDDVLISTDIIVGFP 277

Query: 341 GETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLRE 400
            ET++ F  + +L+ +         +YS R GTP + + + +   +K ER   L   +R+
Sbjct: 278 TETEEAFWKSYELIKETRPDIVNITRYSARKGTPAARLRD-IPGWIKKERSRKLTDLMRK 336

Query: 401 QQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKI 460
             +  N   VG+ + VL+ K GK  G+ + R    ++VV       +G+ ++V+I D + 
Sbjct: 337 IGLENNKRFVGKKLRVLVTKEGK-NGRNLARMNSYRAVVTEGA---VGEFVEVKIKDCRF 392

Query: 461 STLYGELVV 469
           + L G+L  
Sbjct: 393 NYLIGQLAA 401


>gi|300176745|emb|CBK24410.2| unnamed protein product [Blastocystis hominis]
          Length = 507

 Score =  298 bits (763), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 106/457 (23%), Positives = 203/457 (44%), Gaps = 27/457 (5%)

Query: 16  QIVDQCIVPQRF--FVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIR 73
            +   CI+P+++  ++ ++GC  N  D   M+ +    G++   + D+A L VLN+C ++
Sbjct: 41  DVAGDCIIPEKYKLWIITFGCAHNFADGEYMKGILSDYGFQFAENRDEASLWVLNSCTVK 100

Query: 74  EKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTY 133
           + +     +++   +             +VVVAGCV QA+ +    R      ++G +  
Sbjct: 101 DPSEIVFRNYVTEAKEKNK---------MVVVAGCVPQADSDASWLRD---LSILGVKQI 148

Query: 134 YRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC 193
           +R+ E++E    G  +             L  +D    R+      + I EGC   CT+C
Sbjct: 149 HRIVEVVEETLKGNTIHLLSLK------ELPPLDLPKIRRDPHIEIVPISEGCLGHCTYC 202

Query: 194 VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS 253
              Y RG  +S  L  +++  R   D  V E+ L  ++  A  G             + S
Sbjct: 203 KTQYARGKLMSYPLQSIINRLRAAFDEHVFEVWLSSEDTGA-YGIDRGLSIADLLKEIPS 261

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHG--DLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
           +   +    +R   ++P  +   L +         +  ++H+PVQSGS+ +L +M R++T
Sbjct: 262 VIPDQSNTMVRLGMTNPPYVLSHLKEVAAFLRHPNVFSFIHIPVQSGSNAVLNTMQRQYT 321

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
             ++  I+D +    P + I++D I+GF  ETD+D + TMDL+ K  +      K+ PR 
Sbjct: 322 VEQFTSIVDYLLKEVPGLTIATDIIIGFASETDEDHKQTMDLLKKYQFPVVNISKFFPRP 381

Query: 372 GTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR 431
           GTP + M + +  ++  ER          + ++     +G++  V +      +  +VG 
Sbjct: 382 GTPAARM-KHISSSIVKERSSECSAWF--KSLNPYQHFLGKVELVWV-GSETSREFMVGH 437

Query: 432 SPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           +     V+L       G  +  +IT +    + GE+V
Sbjct: 438 TKAYVKVLLPMCESLRGKRVAAKITQITRFHVVGEIV 474


>gi|89898549|ref|YP_515659.1| hypothetical protein CF0742 [Chlamydophila felis Fe/C-56]
 gi|89331921|dbj|BAE81514.1| conserved hypothetical protein [Chlamydophila felis Fe/C-56]
          Length = 421

 Score =  298 bits (763), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 116/445 (26%), Positives = 208/445 (46%), Gaps = 34/445 (7%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGY-ERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
            F +   GC++N Y+     D     GY E ++     DL ++NTC +   A       +
Sbjct: 9   TFKLVCLGCRVNQYEIQSYRDQLNFLGYREIIDPEVPCDLCIVNTCAVTGSAESSGRHAV 68

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            ++        ++  D  +VV GC+ +++ E          +V   + +  + ++     
Sbjct: 69  RQV-------CRQNPDAFLVVTGCLGESDKEFFNSLGRQCLLVSNKEKHQLMEKIF---- 117

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
                     +++D  E       G +R     AF+ +Q+GC+ FC++C++PY RG   S
Sbjct: 118 ---------PAIQDLPEFRIRSFEGKSR-----AFIKVQDGCNSFCSYCIIPYLRGRSRS 163

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R   +V++E   ++  G  E+ + G NV  ++ +G      + + L+  + EI+G+ R+R
Sbjct: 164 RPAREVLEEISGIVSQGYREVVIAGINVGDYQDEGH-----SLAHLIRRVDEIEGIERIR 218

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
            ++  P D+ + L              HL +QSGS+ ILK MNR+++  ++   +D +RS
Sbjct: 219 ISSIDPEDVQEDLRDVLLSGKHTCHSSHLVLQSGSNAILKRMNRKYSRGDFLDCVDALRS 278

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             P  A ++D IVGFPGETD DF  T+ +++ +G+ +   F +SPR  T       Q+  
Sbjct: 279 GDPKYAFTTDVIVGFPGETDSDFEDTLRVIEDVGFIKVHIFPFSPRERTKAYTFSSQLPP 338

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK- 443
           +V  ER   L    RE         +G+ + VL+E+   ++G   G SP+   V   +  
Sbjct: 339 SVINERKKHLAHVAREVARREMTRRIGETLSVLVERI--DEGVAYGHSPYFDMVGFPATA 396

Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468
           N  +  +  V I  V+   L G+ V
Sbjct: 397 NVAVNTLQDVCIESVEDDVLKGKRV 421


>gi|116327128|ref|YP_796848.1| 2-methylthioadenine synthetase [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116332215|ref|YP_801933.1| 2-methylthioadenine synthetase [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
 gi|116119872|gb|ABJ77915.1| 2-methylthioadenine synthetase [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116125904|gb|ABJ77175.1| 2-methylthioadenine synthetase [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
          Length = 443

 Score =  298 bits (763), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 119/443 (26%), Positives = 220/443 (49%), Gaps = 28/443 (6%)

Query: 17  IVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA 76
           +    I  +     + GC++N ++S  +       G+  V   +  +++++NTC +  KA
Sbjct: 1   MPSSPIAERTVLFNTLGCRLNFFESDGLFSSLSKHGFRSVEVGEHPEVVIINTCTVTNKA 60

Query: 77  AEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL 136
             K  + +          IK+     + V GC A+ + E I    P V  VVG     +L
Sbjct: 61  DSKNRNTIRNA-------IKKFPGSQIWVTGCYAETDRESI-EAIPGVAGVVGNTEKSKL 112

Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
           P ++      K ++D++  ++  ++R S  D   N      A+L IQ+GC++ C++C +P
Sbjct: 113 PVMI---LEKKGLIDSNQLIQFSYDRFSYSDVLPN--GHTRAYLKIQDGCNRRCSYCKIP 167

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE-KCTFSDLLYSLS 255
             RG+ +SR    V+D+   L D+GV EI L G N+  +R    DGE K  F+ +L  + 
Sbjct: 168 QARGLGVSRKYQDVLDQVHFLQDHGVGEIVLTGVNLGWYR----DGENKKAFNKILADIL 223

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
           +I    R+R ++  P D+ + L++         P+LH+P+QSG+  ILK M R +T   +
Sbjct: 224 KILEYSRIRISSIEPPDVGNELVELM-THPRFTPFLHVPLQSGNAEILKKMKRTYTPETF 282

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
           R+ ++  +   P++ + +D IVGFPGET++ F  ++ ++  +G+A+  +F +S R  T  
Sbjct: 283 RKRVEIAKEKIPNLFLGTDIIVGFPGETEEMFLDSVKMIQDLGFAKIHAFPFSVRRNTLA 342

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWL 435
               + V + +K  R+  L    R+   +++ + +GQ+ E ++E+ G         +   
Sbjct: 343 ETFPDSVSKEIKKGRVHSLNSLSRKLHENYSLSVIGQVREAILEQGG------TAVTDNY 396

Query: 436 QSVVLNS---KNHNIGDIIKVRI 455
             V L+    KN  IG  + V +
Sbjct: 397 LKVKLSDLELKNLKIGQFLNVEL 419


>gi|239928569|ref|ZP_04685522.1| hypothetical protein SghaA1_10118 [Streptomyces ghanaensis ATCC
           14672]
          Length = 464

 Score =  298 bits (763), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 126/458 (27%), Positives = 197/458 (43%), Gaps = 44/458 (9%)

Query: 48  FFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAG 107
             + G+  V    +AD+ V+NTC   E A +     L    +LK      G    VV  G
Sbjct: 1   MEADGWRLVEDAAEADVAVVNTCGFVEAAKKDSVDALLEANDLKE----HGRTQAVVAVG 56

Query: 108 CVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL--------------------------E 141
           C+A+  G+E+    P  + V+G   Y  + + L                          E
Sbjct: 57  CMAERYGKELAEALPEADGVLGFDDYTDISDRLQTILSGGIHASHTPRDRRKLLPLSPVE 116

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRG-----VTAFLTIQEGCDKFCTFCVVP 196
           R   G  V    +   D  E L+   G     R        A + +  GCD+ C+FC +P
Sbjct: 117 RQAAGASVALPGHGPADLPEGLAPASGPRAPLRRRLDGSPVASVKLASGCDRRCSFCAIP 176

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256
             RG  ISR  S V++E R L + GV EI L+ +N N   GK L G+      LL  L+E
Sbjct: 177 SFRGSFISRRPSDVLNETRWLAEQGVKEIMLVSEN-NTSYGKDL-GDIRLLESLLPELAE 234

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           + GL R+R +   P +M   LI        + PY  L  Q  +  +L++M R      + 
Sbjct: 235 VDGLERVRVSYLQPAEMRPGLIDVLTSTPKVAPYFDLSFQHSAPGVLRAMRRFGDTDRFL 294

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
           +++D IRS  P   + S+FIVGFPGE++ D       ++         F YS   GT  +
Sbjct: 295 ELLDTIRSRAPQAGVRSNFIVGFPGESEADLAELERFLNHARLDAIGVFGYSDEEGTEAA 354

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----S 432
               +++E+V AERL  + +   E      D  VG+ + VL+E   +E+G + GR    +
Sbjct: 355 TYDTKLEEDVVAERLARVSRLAEELVSQRADERVGETVHVLVESVDEEEG-VHGRAAHQA 413

Query: 433 PWLQSVVL--NSKNHNIGDIIKVRITDVKISTLYGELV 468
           P     VL  +     +G +++ ++   +   L  E +
Sbjct: 414 PETDGQVLLTSGGGVGVGRMVEAKVVGTEGVDLVAEPL 451


>gi|194334590|ref|YP_002016450.1| RNA modification enzyme, MiaB family [Prosthecochloris aestuarii
           DSM 271]
 gi|194312408|gb|ACF46803.1| RNA modification enzyme, MiaB family [Prosthecochloris aestuarii
           DSM 271]
          Length = 452

 Score =  298 bits (763), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 127/460 (27%), Positives = 211/460 (45%), Gaps = 31/460 (6%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +  F  + GC++N  ++  + + F   G+   +  +  D++V++TC +  +A +K    +
Sbjct: 9   KTIFAVTLGCKLNYAETSSILERFVKCGWRIASKDEQPDVVVVHTCAVTGQAEQKSRQQI 68

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R+       I+      +VV GC AQ   E I      V+V++G +  + + +      
Sbjct: 69  RRM-------IRTYPASRIVVIGCYAQLSPERI-ENIEGVDVILGSKGKFDIEKYCAAEE 120

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRG-VTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            G  V      V      +        R+ G   AFL IQ+GCD  C +C +P  RG  +
Sbjct: 121 TG--VFIDVAPVASIASPVPAHSLIEKREMGRSRAFLKIQDGCDYGCGYCAIPLARGRSL 178

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           S     V+D AR L   G CEI L G N+ A+R   LD     F+ LL  L ++  + R+
Sbjct: 179 SIDPDVVLDGARALAGAGYCEIVLTGVNIAAYRFGELD-----FAGLLRLLDQVD-VQRI 232

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R ++  P  ++D LI        +MP+ HLP+Q GSD +L+SM RR+T   YR  + R  
Sbjct: 233 RVSSIEPDCLTDELIDVVASSQRIMPHFHLPLQGGSDVVLRSMARRYTTAYYRDRLFRAV 292

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN-----M 378
                 A+ +D + G+PGET +DF++  D +  +  A    F  S R GT  +      +
Sbjct: 293 RRISGCAVGADVMTGYPGETGEDFQSAYDFIASLPLAYLHIFTCSIRPGTALARQVQSGL 352

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG---KLVGRSPWL 435
            + V  ++   R   L++    ++  F  +CVG+ + VLIE+    +G      G +P  
Sbjct: 353 RQPVAHDIVRHRSRLLRELGERKKREFLASCVGREVNVLIEECSCGEGSELFCSGYTPHY 412

Query: 436 QSVVLN-----SKNHNIGDIIKVRITDVKIS-TLYGELVV 469
             V +      S +  IG   +V++ +V     L G  V 
Sbjct: 413 IRVRIAIEGSLSTDPLIGRERRVKVLNVSGDLDLEGIFVT 452


>gi|154244369|ref|YP_001415327.1| MiaB-like tRNA modifying enzyme [Xanthobacter autotrophicus Py2]
 gi|154158454|gb|ABS65670.1| MiaB-like tRNA modifying enzyme [Xanthobacter autotrophicus Py2]
          Length = 437

 Score =  298 bits (762), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 124/440 (28%), Positives = 196/440 (44%), Gaps = 28/440 (6%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V S+GC++N  +   +     ++G ER         +V NTC +  +A  +    +    
Sbjct: 22  VVSFGCRLNALEGDGIARAATAEGLERT--------LVFNTCAVTGEAVRQARQAI---- 69

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT---YYRLPELLERARF 145
                  +E  DL V+V GC AQ + +    R   V++V+G                  F
Sbjct: 70  ---RRARREDPDLRVIVTGCAAQTDPQA-FARMDEVDLVLGNADKTLPAAWATTRAALDF 125

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G          +    R +        +    AF+ +Q GCD  CTFC++P+ RG   S 
Sbjct: 126 GIGAEQKVRVQDISAVRAATPHLADRFEGHTRAFVEVQNGCDHRCTFCIIPFGRGPSRSV 185

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            +  VVD+ R+L+ NG  E+ L G ++ A  G  L G       +   L+ +  L RLR 
Sbjct: 186 PMGAVVDQVRRLVANGHREVVLTGVDLTA-YGADLPGAPTLGRLVRSVLTGVPDLPRLRL 244

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
           ++    +  D L++A  + + LMP+LHL +Q+G D ILK M RRH+  +    I  +R  
Sbjct: 245 SSIDAVEADDELMRALAEEERLMPHLHLSLQAGDDLILKRMKRRHSRAQALDFISALRRA 304

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
           RPD+ + +D I GFP ET++  RAT   +D+ G A    F +S R GT  + M  Q+   
Sbjct: 305 RPDVVLGADIIAGFPTETEEQARATRAFLDEAGLAFVHVFPFSARPGTAAARMP-QLPAG 363

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445
           V AER   L++   +       + VG+  +VL+E  G+      G +     V L     
Sbjct: 364 VVAERARRLRETAADLLRRHLASEVGRRRQVLVEAGGR------GHTEHFTPVRLAWPAE 417

Query: 446 NIGDIIKVRITDVKISTLYG 465
             G +  +RI     + L  
Sbjct: 418 R-GSLAALRIAGHDGARLIA 436


>gi|312195010|ref|YP_004015071.1| MiaB-like tRNA modifying enzyme YliG [Frankia sp. EuI1c]
 gi|311226346|gb|ADP79201.1| MiaB-like tRNA modifying enzyme YliG [Frankia sp. EuI1c]
          Length = 510

 Score =  298 bits (762), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 120/486 (24%), Positives = 197/486 (40%), Gaps = 45/486 (9%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R  + + GC  N  DS  +     + G+  V+   DAD +++NTC   + A +     L 
Sbjct: 8   RVALVTLGCSRNEVDSEELAARLAAGGFRLVDDAADADAVLVNTCGFVDVAKKDSIDALL 67

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
               L+       G   VV  GC+A+  G E+    P  + ++G   Y  + + L     
Sbjct: 68  AADGLRGGGGSGPGPQAVVAVGCLAERYGAELAESLPEADAILGFDAYPDIADRLSAVLA 127

Query: 146 GKRVVDTDYSVEDKFERLSIVDGG----------------------YNRKR---GVTAFL 180
           G R              +S VD G                        R+R   G  A L
Sbjct: 128 GNRPAAHVPRDRRSLLPISPVDRGAAAAGVVVPGHGTHAPTSVGAAVVRRRLDDGPVAAL 187

Query: 181 TIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL 240
            I  GCD+ C+FC +P  RG  +SR    ++ EA  L   G  E+ L+ +N  +  GK L
Sbjct: 188 KISSGCDRRCSFCAIPSFRGSHVSRPPQDILAEAEWLAGQGARELVLVSENSTS-YGKDL 246

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300
            G+      LL  L+   G+VR+R     P +    L++       + PYL L  Q  S 
Sbjct: 247 -GDLRALEKLLPQLAATPGIVRVRTVYLQPAETRPTLLEVLLTTPGVAPYLDLSFQHASP 305

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
            +L+ M R   + ++  ++ R R+  P +   S+FIVGFPGET +D     D +++    
Sbjct: 306 AVLRRMRRFGGSADFLDLLRRGRAFAPALGARSNFIVGFPGETPEDLDILADFLEQAELD 365

Query: 361 QAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
               F YS   GT    +  ++ E    +R   +   + +   +  +  VG+ +EVL+E+
Sbjct: 366 AIGIFGYSDEDGTEAVGLPGKLSEAEIEDRRARIADLVEQLTAARAERRVGETVEVLVEE 425

Query: 421 HGKEKG-------KLVG-------RSPWLQSVVLNSKNHN----IGDIIKVRITDVKIST 462
              +            G        +    SV L++   +    +GD++  R+   +   
Sbjct: 426 IDPDATLDAEAARFAYGSAAHQQRDADGACSVRLSAGASDVPVAVGDLVAARVVGTEGVD 485

Query: 463 LYGELV 468
           L  ELV
Sbjct: 486 LVTELV 491


>gi|254451116|ref|ZP_05064553.1| MiaB-like tRNA modifying enzyme [Octadecabacter antarcticus 238]
 gi|198265522|gb|EDY89792.1| MiaB-like tRNA modifying enzyme [Octadecabacter antarcticus 238]
          Length = 405

 Score =  297 bits (761), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 125/439 (28%), Positives = 201/439 (45%), Gaps = 43/439 (9%)

Query: 36  MNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRI 95
           MN Y++  M+++  + G +        + +++NTC +  +A  K    + ++R       
Sbjct: 1   MNAYETEAMKELAGAAGVQ--------NAVIVNTCAVTAEAVRKAKKEIRKLR------- 45

Query: 96  KEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYY-------RLPELLERARFGKR 148
           +E  D  ++V GC AQ E E      P V+ V+G              P+L+ +    + 
Sbjct: 46  RENPDATLIVTGCAAQTEPET-FIAMPEVSKVIGNTEKMQAATWAGMAPDLIGQTEPVQ- 103

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
            VD   SV +    L  +DG   R R   A++ +Q GCD  CTFC++PY RG   S    
Sbjct: 104 -VDDIMSVTETAGHL--IDGFGTRSR---AYVQVQNGCDHRCTFCIIPYGRGNSRSVPAG 157

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
            VV++ ++L+  G  EI L G ++ +W G  L         ++  L  +  L RLR ++ 
Sbjct: 158 VVVEQIKRLVGKGYNEIVLTGVDLTSW-GADLPALPKLGDLVMRILKLVPDLPRLRISSI 216

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
              ++ D L+ A      LMP+LHL +Q G D ILK M RRH   +  +  +  R +RPD
Sbjct: 217 DSIEVDDNLLCAIATEPRLMPHLHLSLQHGDDLILKRMKRRHLRDDAIKFSEDARKLRPD 276

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML--EQVDENV 386
           +   +D I GFP ET+  F  ++ L+D         F YSPR GTP + M      D  V
Sbjct: 277 MTFGADIIAGFPTETEAHFENSLKLIDDCALTWLHVFPYSPRQGTPATRMPAVNGKDITV 336

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHN 446
           +A RL         + +S   A +G+  +VL+E         +GR+     V   + +  
Sbjct: 337 RAARLRAAGDVAVAKHLS---AQLGKTHQVLMENP------RMGRTEQFTEVTFETDHPE 387

Query: 447 IGDIIKVRITDVKISTLYG 465
              II  +I  ++ + L  
Sbjct: 388 S-QIITAKIIGIRENRLTA 405


>gi|241558622|ref|XP_002400268.1| conserved hypothetical protein [Ixodes scapularis]
 gi|215499750|gb|EEC09244.1| conserved hypothetical protein [Ixodes scapularis]
          Length = 460

 Score =  297 bits (761), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 118/428 (27%), Positives = 197/428 (46%), Gaps = 19/428 (4%)

Query: 14  VSQIVDQCIVP--QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCH 71
           +++      +P   + +VK++GC  N  DS  M     ++GY  V     ADL +LN+C 
Sbjct: 43  IAKATGDSFLPGTHKIYVKTWGCAHNSSDSEYMAGQLAAKGYSIVEDASSADLWLLNSCT 102

Query: 72  IREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ 131
           ++  A +     +       +S +++G    VV AGCV+QA       +      VVG Q
Sbjct: 103 VKNPAEDHFRGAI-------DSGLRQGK--KVVAAGCVSQATPNVEYLKG---LSVVGVQ 150

Query: 132 TYYRLPELLERARFGKRVVDTDYSVEDKFERL-SIVDGGYNRKRGVTAFLTIQEGCDKFC 190
              R+ E++E    G  V       + + +   + +     R+  +   + I  GC   C
Sbjct: 151 QTDRIVEVVEETLKGNSVRLLGSKKDGRRKAGGAALTLPKIRRNPLVEIIAINTGCLNHC 210

Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDL 250
           T+C   + RG   S S+ ++V  A++    GV EI L  ++  A  G+ +          
Sbjct: 211 TYCKTKHARGDLGSYSIEELVARAKQAFQEGVREIWLTSEDTGA-YGRDIGETLPDLLRE 269

Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
           + ++     ++RL  T           +        +  +LH+PVQSGSD +L  M R +
Sbjct: 270 MVAVVPEGCMLRLGMTNPPYILDYLEDMAEILSHPRVYSFLHVPVQSGSDPVLAEMKREY 329

Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370
           TA ++R +ID +R   P I I++D I GFP ET++DF  TM LV +  +   F  ++ PR
Sbjct: 330 TAAQFRIVIDFLRKAVPGITIATDIICGFPTETEEDFEETMALVREYRFPSLFINQFYPR 389

Query: 371 LGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG 430
            GTP + M +++  +V  ER   L +    Q     D  VGQ   VL+ +   +K  LVG
Sbjct: 390 PGTPAAKM-KRIPTHVVKERTKRLSELF--QSYQTYDGRVGQRQAVLVTEVAHDKKHLVG 446

Query: 431 RSPWLQSV 438
            + + + V
Sbjct: 447 HNKFYEQV 454


>gi|212551080|ref|YP_002309397.1| Fe-S oxidoreductase [Candidatus Azobacteroides pseudotrichonymphae
           genomovar. CFP2]
 gi|212549318|dbj|BAG83986.1| putative Fe-S oxidoreductase [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
          Length = 433

 Score =  297 bits (761), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 115/429 (26%), Positives = 207/429 (48%), Gaps = 21/429 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++    + GC++N  ++  + + F   G + V   ++ D+++++TC + E+A +K  + +
Sbjct: 10  KKAAYYTLGCKLNYAETSAIRECFLQVGIKTVQGEENPDIVIISTCSVTEEANKKCRNLI 69

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R+R       ++     +VV GC AQ   EEI+ +   +++VVG +    L + + R  
Sbjct: 70  RRVR-------RKYSSAFLVVTGCYAQLCSEEII-KIEGIDLVVGLEGKRNLSKYVLRGE 121

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G        S   + +  +       R R   +FL IQ+GCD  C++C +P  RG   +
Sbjct: 122 RG-----IIVSPMMESQEFTPACSYDGRTR---SFLKIQDGCDYTCSYCTIPLARGKSRN 173

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R +S +V  + +L   GV EI L G N+    G         F DLL  L +++ + R R
Sbjct: 174 RKISDLVRNSMQLGAKGVKEIVLTGVNI----GDFGKSTGENFLDLLRDLDKVENISRFR 229

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
            ++  P  +SD +I+     D  +P+ H+P+QSGSD +L+ MNR++     R  I++I++
Sbjct: 230 ISSIEPNLLSDEIIEFVAFSDRFVPHFHIPLQSGSDAVLRLMNRKYDIVLLRSKIEKIKT 289

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           +  D  I  D IVG  GETD+ FR +   ++ + ++Q   F YS R  T   N+ + +  
Sbjct: 290 LMTDAFIGFDIIVGMRGETDEYFRESQKFLESLPFSQLHVFTYSERPATMALNINQMITL 349

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
             + ER   L    + +   F  + +G    VL E + +   K+ G +     V +    
Sbjct: 350 KKRQERRKELLALSKRKCKDFYCSQIGTNHSVLFE-NSRRGNKIYGFTENYIKVEMEYDE 408

Query: 445 HNIGDIIKV 453
             I  ++ V
Sbjct: 409 KFINQLLGV 417


>gi|317051787|ref|YP_004112903.1| MiaB-like tRNA modifying enzyme [Desulfurispirillum indicum S5]
 gi|316946871|gb|ADU66347.1| MiaB-like tRNA modifying enzyme [Desulfurispirillum indicum S5]
          Length = 426

 Score =  297 bits (761), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 123/446 (27%), Positives = 210/446 (47%), Gaps = 28/446 (6%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           F++K+ GC++N  +S  M++     G  +      AD +++N+C +  +A  K  ++  R
Sbjct: 4   FYIKTLGCRLNQAESAMMKEELILSGMRQAEHPGQADFVLVNSCTVTARADSKTLAYARR 63

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
            R       +E     + + GC+AQ   E++L   P V++V G Q    L   L R    
Sbjct: 64  AR-------RENPAATIAIIGCMAQTAMEDLLA-LPYVDMVFGNQEKNALVTTLLRQVPH 115

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
              V +++S   K    +  D   N        L IQ+GCD  C++C+V   RG   S  
Sbjct: 116 SVGVLSEHSAPLKLIAQASGDERVN--------LKIQDGCDNTCSYCLVTIARGPSRSIK 167

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
           +  V++ A + + +   EI L G ++ +  GK L  E  +   L+  L EI  L RLR +
Sbjct: 168 MEHVLETAAE-LAHTFDEIILTGVHIGS-YGKDL-AEPSSLGRLMERLLEIPHLGRLRLS 224

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
           +  P ++    I        L  +LH+ +QS  DRIL  MNR +   E  +++++++S+ 
Sbjct: 225 SIEPAEID-ETILGLLSHPKLCRHLHISLQSADDRILALMNRHYRWSEALKVMEQVKSID 283

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           P + I +D I GFPGE+   F +    ++         F +S R GT   ++ +Q  ++ 
Sbjct: 284 PFLKIGTDIIAGFPGESPATFESICQRIESSPLDYLHIFPFSGRPGTQAVDLPDQCPDHE 343

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHN 446
           K  R+  LQ      Q  F+ +C+GQ   VL+E   K  G L G +    SV L  + + 
Sbjct: 344 KHARVQRLQAVAAHLQERFHRSCLGQQRWVLLE---KGAGYLKGETDNYISVRL--RENP 398

Query: 447 IGDIIK-VRITDV--KISTLYGELVV 469
            G   + VR++ +     ++ GE+V 
Sbjct: 399 TGRSKQLVRLSGLADDGQSMEGEIVT 424


>gi|94987120|ref|YP_595053.1| 2-methylthioadenine synthetase [Lawsonia intracellularis
           PHE/MN1-00]
 gi|123082153|sp|Q1MQJ5|RIMO_LAWIP RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|94731369|emb|CAJ54732.1| 2-methylthioadenine synthetase [Lawsonia intracellularis
           PHE/MN1-00]
          Length = 440

 Score =  297 bits (760), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 114/450 (25%), Positives = 194/450 (43%), Gaps = 33/450 (7%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQG--YERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           R    S GC  N  D+ R+       G     ++  ++AD + +NTC     A ++  + 
Sbjct: 9   RCHAISLGCPKNRVDTERLLGSL---GIPLTFIDYPNNADFVFINTCSFIHTAVQESVNT 65

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRR-SPIVNVVVGPQTYYRLPELLER 142
           + ++        +      ++VAGC     GE+IL++  P V++ +  +      E +  
Sbjct: 66  ILQLV---ADVEELSEKPFIIVAGCFVGRYGEKILKKDIPEVDLWLDNKEIESWNEQILL 122

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           A   K                 +V           A+L I +GC   C+FC +P  RG  
Sbjct: 123 ALNIKSTF--------------LVTDRIITTGKSYAWLKISDGCQHSCSFCTIPSIRGSL 168

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            S S+ ++V E+R ++D GV E+ L+ Q+V AW G+ L         LL  L  + GL R
Sbjct: 169 HSYSIDELVKESRHILDQGVKELVLVAQDVTAW-GRDLP-NNYGLKTLLDHLLVLDGLKR 226

Query: 263 LRYTTSHPRDMSDCLIKAHGDL-DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           LR    +P  ++   +     + +  +PY  +P+Q     IL  M R   A   R++ID 
Sbjct: 227 LRLMYLYPTGLTKDFLLYLKSVGEPFVPYFDVPIQHAHPDILSCMGRPF-AKNPRKVIDN 285

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           IRSV P+  + +  I GFPGET+         +++I +     F Y    GTP + M  Q
Sbjct: 286 IRSVFPEAVLRTSVITGFPGETEGHHVYLSKFIEEIKFQHLGIFSYVAEAGTPAAVMPNQ 345

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGR----SPWLQ 436
           V E VK +R   L +   +    +    VG+ + ++++  H +      GR    +P + 
Sbjct: 346 VGEKVKEQRKAELMEIQLKISEKWLKNFVGKRLSLIVDNVHPEWPELYTGRAWFQAPEVD 405

Query: 437 S-VVLNSKNHNIGDIIKVRITDVKISTLYG 465
             V ++  N   G++I+  I +     L  
Sbjct: 406 GMVYISGPNIKPGELIEADIMESHSYDLVA 435


>gi|209878518|ref|XP_002140700.1| radical SAM domain-containing protein [Cryptosporidium muris RN66]
 gi|209556306|gb|EEA06351.1| radical SAM domain-containing protein [Cryptosporidium muris RN66]
          Length = 548

 Score =  297 bits (760), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 114/473 (24%), Positives = 211/473 (44%), Gaps = 48/473 (10%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R  ++++GC  N  DS  M  +    GYE VN +DD DLIV+N+C ++  +     + + 
Sbjct: 89  RIMMRNFGCNHNRSDSESMNGLLVEYGYEIVNELDDCDLIVINSCTVKSPSEMSCRNLVE 148

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
              N K           VVV GC+ QA  E  L     V+ V+G    +R+ E++E    
Sbjct: 149 TALNKKK---------FVVVTGCIPQA--ERTLPWLKNVS-VLGVSYTHRIVEIVELTLQ 196

Query: 146 GKRVVDTDYSVE------------DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC 193
           G  V     + +              F RL  ++    RK  +   +T+  GC   CT+C
Sbjct: 197 GNIVEMISMNSDLSAIGTTKKQDKATFSRLPPLNLPKIRKNPLVEIITVSVGCLGNCTYC 256

Query: 194 VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS 253
              Y+RG   S ++  +++  +  +  G+ +I L  ++  A  GK +     +   +   
Sbjct: 257 KTKYSRGNLGSYTIETILNRVKTSLKEGIKQIWLTSEDTGA-YGKDIGTNLSSL--IYQI 313

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHG--DLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
           L+ I   V +R   ++P  + + +           +  +LH+PVQSGS+++L +M R +T
Sbjct: 314 LNIIPPDVMIRIGMTNPPYILNQIQDMVEVLSHPNVFEFLHIPVQSGSNKVLTNMRRDYT 373

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
             ++ +++D I S    I I++D I GFPGET++D + T++L+ K  +      K+ PR 
Sbjct: 374 REDFCKLVDEISSQLSLITIATDIICGFPGETEEDHQDTVELIKKYKFPVINISKFYPRP 433

Query: 372 GTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQ----------------IIE 415
           GTP + M + V   +   R L +   L    + +N+  + +                I+ 
Sbjct: 434 GTPAAKM-KAVPNGISKRRSLEITNIL--HSLKYNEELLEKLRLNMKYNLSTSISDIIVR 490

Query: 416 VLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           V   ++       +G +     V++   +  +G +  V++   +     GE++
Sbjct: 491 VWFIENSDISIHTIGHTKQYTKVIVEKDDKLLGKVALVKLIKPERWHFEGEVI 543


>gi|288560943|ref|YP_003424429.1| MiaB-like tRNA modifying enzyme [Methanobrevibacter ruminantium M1]
 gi|288543653|gb|ADC47537.1| MiaB-like tRNA modifying enzyme [Methanobrevibacter ruminantium M1]
          Length = 428

 Score =  297 bits (760), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 124/442 (28%), Positives = 223/442 (50%), Gaps = 24/442 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + F+++YGC  N  DS  M  +        V++ ++AD I++NTC+++     K    + 
Sbjct: 5   KVFIETYGCTFNQADSEIMAGILNENNIGLVSTEEEADAIIVNTCYVKLPTESK---VIN 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           RI+NL+    K+  D  ++V GC+ + + +++    P  +  +GP    +  ++++    
Sbjct: 62  RIKNLQ----KQYPDKKIIVGGCMVEVDPKKLEAIGPNCS-WIGPHQLNKTADVVKSTIG 116

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G+ V +  +S E K      V     RK      + I EGC   CT+C   + RG   S 
Sbjct: 117 GEIVREFGFSDEPK------VCVPKIRKDPYIHVIQICEGCLGACTYCCTRFARGHLNSY 170

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            +  +V+EAR  I++G  EI L  Q+ +A+ GK   GEK   SDL+  ++ + G  R+R 
Sbjct: 171 PIKDIVEEARLAIEDGCVEIELTAQDTSAF-GKDT-GEK--LSDLIKEVASLDGDFRVRV 226

Query: 266 TTSHPRDMSDCLIKAHG--DLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
              HPR++ + L        ++ +  ++HLP+QSGSD++L+ M R HT  +Y+ I+   +
Sbjct: 227 GMMHPRNIGNDLDNLIEAFKMEKVYDFIHLPIQSGSDKVLREMGRNHTVDDYKNIVYSFK 286

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
              PDI I++D I+G+P ET++DF  T +L+ +I +      KY  R G   S++ + + 
Sbjct: 287 QAIPDITIATDIIIGYPTETEEDFMKTAELIREIKFNLIHLSKYQHREGAISSSL-DNIP 345

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
            +    R   L +   E     N     + ++ L+ + G + G  + ++     VV+  +
Sbjct: 346 FDDMKRRSKYLSEIKFEMLEEENKFLQDREMDALVVEKGSKGG-FIAKTNSYIPVVV--Q 402

Query: 444 NHNIGDIIKVRITDVKISTLYG 465
           + N+G+ IKV I     + L G
Sbjct: 403 DVNLGEFIKVHIDKTTGTYLIG 424


>gi|255514141|gb|EET90403.1| RNA modification enzyme, MiaB family [Candidatus Micrarchaeum
           acidiphilum ARMAN-2]
          Length = 423

 Score =  297 bits (760), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 119/441 (26%), Positives = 209/441 (47%), Gaps = 29/441 (6%)

Query: 28  FVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRI 87
           ++K+YGC +N  DS  +  +  S    +  SM DAD+I++NTC ++    +K+   L ++
Sbjct: 4   YIKTYGCTLNQADSDIINSVLDSANIGQAESMQDADVIIVNTCTVKNPTEQKISDLLKKL 63

Query: 88  RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147
            + K           V+V GC+A A  + I   SP  ++V        +P+ + R   G+
Sbjct: 64  ESEKRK---------VLVTGCMAAANPDIISNASPSASIVT-ISNLEDMPDAVSRTASGE 113

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
           RVV +     D+             ++G  A + + +GC   C+FC   + R    S S 
Sbjct: 114 RVVMSSLQKRDRLASFKP-------RQGPVARIPVSDGCMSSCSFCETKFARSALNSFSE 166

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
             +++  +  + +G  EI +  Q++ A  G      K   + L+  +S I+G  ++R   
Sbjct: 167 DLILNAVKYSVKSGAVEIDITSQDIGA-YGAD---RKSNIALLMEKISRIEGFFKVRIGM 222

Query: 268 SHPRDMSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
            +P  ++  + +    L  +    + HLP+QSGSD +LKSM R +T  +Y + +D +RS 
Sbjct: 223 LNPERLAGYINEFASALGNEKFYKFAHLPLQSGSDSVLKSMRRNYTVDQYLEFVDVLRSY 282

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P I+I +D IVG+P ETD+DF  +++++           ++  R  T    M +Q+D+ 
Sbjct: 283 VPGISIETDMIVGYPTETDEDFTNSIEVLKSFRPDVTNISRFGARRHTAAHKM-KQLDQT 341

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GRSPWLQSVVLNS-K 443
           +  ER   +   +R  Q   N   VGQ I  L+ +     G  + GR+   + VVL    
Sbjct: 342 LIKERSSEMYSAVRGIQHGINGKFVGQRITALMTES---TGVSINGRTDSYKQVVLRGAS 398

Query: 444 NHNIGDIIKVRITDVKISTLY 464
           +  IG +I V +     + LY
Sbjct: 399 SDLIGKLINVSVHSATANALY 419


>gi|31789483|gb|AAP58596.1| conserved hypothetical protein [uncultured Acidobacteria bacterium]
          Length = 410

 Score =  297 bits (760), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 119/431 (27%), Positives = 189/431 (43%), Gaps = 25/431 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
            + + ++GC++N  DSL +E    S+G       + AD++++NTC +   A +     + 
Sbjct: 4   TYALVTFGCRVNQADSLALEGQLRSRGAVLAP-PERADVVIVNTCSVTAAADQGARQTVR 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R+        ++     VVV GC A     E+     +V+VV       R   L++   +
Sbjct: 63  RV-------TRDNPAARVVVTGCYASRCAGEVAALPNVVHVV----PNDRKESLVDLIEW 111

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                      +     L    GG          L +Q GCD+ C++C++P TRG   SR
Sbjct: 112 EPTTATRFGGGDGPCGGLEPGVGG-----RTALTLRVQTGCDETCSYCIIPRTRGSSRSR 166

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            L  V     + ID G  EI + G ++ +  G+ L G+  T   L+  L++  G V  R 
Sbjct: 167 PLELVTAGIARAIDAGYKEIAITGVHLGS-YGRDL-GDGTTLVALVRRLADWPGDVLFRL 224

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
           ++  P D SD L+        + P+ HLP+Q G+DR+L++M R +TA  YR++++RIR+ 
Sbjct: 225 SSLEPMDCSDALVDLVACSPRVAPHFHLPLQHGADRVLRAMRRPYTAGFYRRLVERIRAR 284

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P  A+ SD IVGFPGE  +DF  +  LV  +   Q   F YS R GT  S    +V+  
Sbjct: 285 LPHAAVGSDLIVGFPGEATEDFEESRALVASLPLTQLHVFPYSDRPGTEASGAGRKVEGA 344

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445
           V  ER   ++         F  +  G     L    G         +     V L     
Sbjct: 345 VIRERGRVMRTIGATLVERFRRSQAGTTRRALTVDDG-----WSAVTDNYLKVRLTQPRV 399

Query: 446 NIGDIIKVRIT 456
                + V +T
Sbjct: 400 R-NTWVDVTVT 409


>gi|218530899|ref|YP_002421715.1| MiaB-like tRNA modifying enzyme [Methylobacterium chloromethanicum
           CM4]
 gi|218523202|gb|ACK83787.1| MiaB-like tRNA modifying enzyme [Methylobacterium chloromethanicum
           CM4]
          Length = 410

 Score =  296 bits (759), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 119/435 (27%), Positives = 192/435 (44%), Gaps = 32/435 (7%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           ++GC++N  +S  +             + +  DL+V+NTC +  +A  +    + R+   
Sbjct: 7   TFGCRLNTVESEVLRGHAE-------PNSEGRDLVVVNTCAVTAEAGLQARKAIRRL--- 56

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
                +E     +VV GC A+ E        P V  +VG     R        + G    
Sbjct: 57  ----SRERPGAEIVVTGCGAEVERAS-YAAMPEVARLVGNAAKLRPASW----QSGTAPA 107

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
             D       E   I     + +    AF+ +Q GCD  CTFCV+P+ RG   S  +++ 
Sbjct: 108 PEDIMAVRTAEPTHITTMSGHTR----AFVPVQNGCDHRCTFCVIPFGRGNSRSVPVAEA 163

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270
           V + R+++++G  E+ L G ++ A  G+ LD +      +   L+E+  L RLR ++   
Sbjct: 164 VAQVRRIVEHGGREVVLTGVDLTA-YGRDLDSDLSLGRLVRTILAEVPDLARLRLSSIDS 222

Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330
            +    LI A  +   LMP++HL +Q+G D ILK M RRH+  +  ++ + +R +RP + 
Sbjct: 223 VEADADLIAAFAEEPRLMPHVHLSLQAGDDLILKRMKRRHSRADAIRLCETLRDLRPGLV 282

Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER 390
             +D I GFP ET+  F  ++DLV + G      F YSPR  TP + M   V  +V   R
Sbjct: 283 FGADLIAGFPTETEAQFARSLDLVVECGLTHLHVFPYSPRPDTPAARMP-AVPGDVVRAR 341

Query: 391 LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDI 450
              L++          D  VG    VL E+         GR+     V   S+    G+I
Sbjct: 342 AARLREAGAAALARHLDGEVGAHRRVLTERGD------TGRTEAFSLVRF-SEPVPAGEI 394

Query: 451 IKVRITDVKISTLYG 465
             V +T      L  
Sbjct: 395 RDVTVTGHDGQALLA 409


>gi|328773588|gb|EGF83625.1| hypothetical protein BATDEDRAFT_1672 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 446

 Score =  296 bits (759), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 107/455 (23%), Positives = 200/455 (43%), Gaps = 29/455 (6%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERV---NSMDDADLIVLNTCHIREKAAEKVYSF 83
            FVK++GC  N  D   M  +  + GY  +   +  ++A + VLN+C ++  + +   + 
Sbjct: 7   VFVKTWGCGHNNSDGEYMAGLLAADGYNVILDHSKAEEAQVWVLNSCTVKGPSQQTFVND 66

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           + + +              +VVAGCV QA       +      V+G Q   ++  ++E  
Sbjct: 67  IDKGKLAGKK---------IVVAGCVPQASPSNDEWKG---LSVIGVQQIDQVVRVVEET 114

Query: 144 RFGKRVVDTDYSVEDKFERLSI------VDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197
             G  +     + E   + +        +D    R+      + I  GC   CT+C   +
Sbjct: 115 LKGNTIRLMKEAKEVSADGVKRKAGGARLDLPKVRRNPFIEIIPINTGCLNQCTYCKTKH 174

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSD--LLYSLS 255
            RG   S SL++++     ++  GV EI L  ++  A  G+ +        +  L+    
Sbjct: 175 ARGDLGSYSLAEIIARVESVLHEGVKEIWLTSEDTGA-YGRDIGVSIVDLLEGILVAMDK 233

Query: 256 EIKGLVRLRYTTSHPRDMSDCL--IKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
            I     LR   ++P  + + L  I    +   +  +LH+PVQ+GS ++L  M R +   
Sbjct: 234 HIVQDAMLRVGMTNPPYILEHLKGIAKVLNHPKVYSFLHVPVQAGSTKVLDDMRRLYAVQ 293

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
           ++ +++D +R   P + I++D I GFP ETD+DF  TM L++K  ++     ++ PR GT
Sbjct: 294 DFERVVDVLREKVPCVTIATDIICGFPTETDEDFDETMHLLEKYKFSVLHISQFYPRPGT 353

Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSP 433
           P + M +++  N+   R          +  +  D+ VG I ++L+ +   +    VG + 
Sbjct: 354 PAARM-KRISTNIVKNRSRRATTFF--ESYTTYDSLVGTIQKILVTEQSADGNHYVGHNK 410

Query: 434 WLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
             Q +++      +G    VRI       L GE +
Sbjct: 411 PYQQILVPKNEKLMGQTFHVRIVRASKFYLMGEPL 445


>gi|302344678|ref|YP_003809207.1| MiaB-like tRNA modifying enzyme YliG [Desulfarculus baarsii DSM
           2075]
 gi|301641291|gb|ADK86613.1| MiaB-like tRNA modifying enzyme YliG [Desulfarculus baarsii DSM
           2075]
          Length = 437

 Score =  296 bits (759), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 105/449 (23%), Positives = 196/449 (43%), Gaps = 21/449 (4%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           F++ + GC  N+ +   +  M  ++G+      + AD +++NTC     A ++    +  
Sbjct: 4   FYLLNLGCAKNLVEGEHLAGMLLAEGWLASERPEAADWLIVNTCGFIRPAVDEAIDNILE 63

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           + + +           + V GC+    G ++ R  P  +++V P     LP LL      
Sbjct: 64  LHDERR------PGQRLAVVGCLVGRYGRKLARSLPEADLLVAPGRLGDLPALLAAPPAQ 117

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           +  +    ++ D     ++  G         A+L + +GC   C FC +P  RG   SR 
Sbjct: 118 RLAIAPPRAIFDAATPRALSTGPG------WAYLRLSDGCRHRCHFCTIPAIRGPLRSRP 171

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
            + ++ EA  +  +GV E+ L+ Q+++++     DG     + LL  ++ + G+  +R  
Sbjct: 172 AADILAEAEAVAQSGVVELNLVAQDLSSYGHDRPDG--PDLAALLPQIAAVPGVAWVRPL 229

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
             HP  +   LI+A      ++PY  LP+Q  +D +L++M RR T  +   +ID IR++R
Sbjct: 230 YLHPDVLETRLIRAICQTPGVLPYFDLPLQHLADPVLRAMGRRRTGAQLLALIDEIRAMR 289

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           P+  +    +VG PGE   +F   M  V++I +    +F + P  G+  + +     E +
Sbjct: 290 PEAVLRGTLLVGHPGEGAAEFTRLMRGVEEIAFDHLGAFAFCPEPGSRSARLPAPSPE-L 348

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL-VGRS----PWLQS-VVL 440
             ERL  L    R        A VGQ + +L +    +   +  GR+    P +    ++
Sbjct: 349 AQERLETLMAAQRAISAGKLAAQVGQQLSLLAQGPHPDHPYVRWGRTWRQAPEVDGQTIV 408

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELVV 469
              +   G I   RI+      L    V 
Sbjct: 409 TDGDPAPGRIHLCRISASHDYDLEAVAVA 437


>gi|114328163|ref|YP_745320.1| tRNA 2-methylthioadenosine synthase-like protein [Granulibacter
           bethesdensis CGDNIH1]
 gi|114316337|gb|ABI62397.1| tRNA 2-methylthioadenosine synthase-like protein [Granulibacter
           bethesdensis CGDNIH1]
          Length = 434

 Score =  296 bits (759), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 119/442 (26%), Positives = 189/442 (42%), Gaps = 35/442 (7%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
             + ++GC++N Y+S  M     +           +D I++NTC +  +A  +    + R
Sbjct: 25  VNILTFGCRLNSYESEVMRGHAAAL----------SDTIIVNTCAVTGEAERQARQAIRR 74

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
                    +E  +  +VV GC AQ +        P V  V+G +   +       A   
Sbjct: 75  AH-------RERPEAQIVVTGCAAQLDPAR-WAALPGVTRVLGNEDKLKPESW---APDA 123

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
              +      ++    L     G  R     AF+ +Q+GCD  CTFC++P+ RG   S  
Sbjct: 124 PSAISDIMQAKETAAHLVTEFAGRAR-----AFVQVQQGCDHRCTFCIIPFGRGPSRSVP 178

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
           +  +VD+ R L+  G  E+ L G ++ +  G  L G       +   L+ +  L RLR +
Sbjct: 179 IGAIVDQVRLLVQRGYQEVVLTGVDITS-YGPDLPGAPGLGQMMRRLLALVPELPRLRLS 237

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
           +  P ++ + L     +   LMP+LHL +Q+GSD ILK M RRH+     + + R R +R
Sbjct: 238 SLDPEEIDEDLWHLIAEEPRLMPHLHLSLQAGSDMILKRMKRRHSRAGALETVARARRLR 297

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           P IAI +D I GFP ET+  F  T+  V +        F YS R GTP + M        
Sbjct: 298 PGIAIGADVIAGFPTETEALFEETLAFVREAQLPFLHVFPYSERPGTPAARMPAIRVAER 357

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHN 446
           +A     L+++   Q   F    +G+ I +L E          G S       L S+   
Sbjct: 358 RAR-AARLREEAARQAEPFFTVQLGRTISLLTETEQ------AGHSEHFIPTRL-SRPTE 409

Query: 447 IGDIIKVRITDVKISTLYGELV 468
            G +IK  +       L  + V
Sbjct: 410 PGRLIKAMVVGADQRGLVADEV 431


>gi|300122464|emb|CBK23034.2| unnamed protein product [Blastocystis hominis]
          Length = 465

 Score =  296 bits (759), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 105/448 (23%), Positives = 191/448 (42%), Gaps = 27/448 (6%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +  +V ++GC  N+ D   M+ +    GY   +  ++AD+ V+NTC +R+K+ +   +  
Sbjct: 36  KTVYVHTFGCSHNISDGETMKGVLAQGGYNITSKKEEADVWVINTCTVRDKSIQSFRTLY 95

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
              +              +VVAGC+ +A+    L      +  +G +   ++ E ++   
Sbjct: 96  NEAKKTGKK---------LVVAGCMLEADPS--LSSEFHADATLGVRQIAQIKETVDSLF 144

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
           F         S E     +  +     RK      + I  GC   CTFC     RG   S
Sbjct: 145 FPPTHHFVSPSDE-----IPSLQLPKIRKDEGVEIIPISLGCLGACTFCQTRLARGKLWS 199

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG---LV 261
             + +++        NG+ EI L  ++  A+   G+D        L    SE++    +V
Sbjct: 200 YPIDEIIKRVHAAKVNGISEIWLTSEDTGAY---GMDRNSSLMELLDRIRSEVEDSNVMV 256

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           ++  T           +    +      YLH+PVQSGSD +LK MNR++   ++R+I   
Sbjct: 257 KIGMTNPPFLKPMLEPLSTILNHKNFYSYLHIPVQSGSDAVLKRMNRKYQVSDFREICSF 316

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +    P I +S+D IVGFP E+ +D   TM L+  +        +Y PR  T  +   EQ
Sbjct: 317 LSQHVPGITLSTDIIVGFPYESAEDHAKTMQLLRDLNLNIVHYSRYYPRPHTLAAR-YEQ 375

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSV-VL 440
           +  +V   R+  L      + +   D  VG+ ++V +  + K        +     V ++
Sbjct: 376 LPIDVVKSRVKELSDWF--KALHPYDELVGKEMDVWV-SNEKTGDYRCCHTKNYTKVLIV 432

Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
           +SK    GD+++V+  + +   +   +V
Sbjct: 433 DSKEFAAGDVVRVKCVEAQRFHVKARIV 460


>gi|145591528|ref|YP_001153530.1| RNA modification protein [Pyrobaculum arsenaticum DSM 13514]
 gi|145283296|gb|ABP50878.1| RNA modification enzyme, MiaB family [Pyrobaculum arsenaticum DSM
           13514]
          Length = 416

 Score =  296 bits (758), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 127/453 (28%), Positives = 204/453 (45%), Gaps = 50/453 (11%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R ++++YGC +   D+  +       G   V   +DAD++++ TC +RE    +  + + 
Sbjct: 3   RAYIETYGCWLAKADAEIIRQRL---GLVAVERPEDADVVMIYTCAVREDGEVRQLARIR 59

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +  L+           VVVAGC+A+     I   +P   ++         P  +E  + 
Sbjct: 60  ELAGLRKE---------VVVAGCLAKLRPYTIKSAAPNARLL--------YPSEVEGGQK 102

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI---E 202
            +  V   Y                  + GV   + +Q GC   CTFC   YTRG     
Sbjct: 103 REMKVLPRY------------------EGGVIYTVPLQVGCLGNCTFCATKYTRGGAGYV 144

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS-LSEIKGLV 261
            S +   VV   ++ +  G  EI L GQ+V  +          +  DLL   L E++G  
Sbjct: 145 KSANPDDVVRHVKEAVARGAKEIYLTGQDVITYGFDMRWRPGWSLPDLLERILREVEGEY 204

Query: 262 RLRYTTSHPRDMSD---CLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           R+R   S P   +     L+        +  Y HLPVQSGSDR+L++M RR+T  EYR++
Sbjct: 205 RVRIGMSEPWVFARFADRLLDIVKGDRRVYRYFHLPVQSGSDRVLRAMGRRYTVDEYREL 264

Query: 319 IDRIRSVRPDIAI-SSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
           + +IR    + A  ++D IVGFPGE +DDF  ++ LV+++   +    ++SPR  T  + 
Sbjct: 265 VRKIRKTLGEFAFVATDIIVGFPGEAEDDFWESVKLVEELQLDKVHVARFSPRPFTEAAV 324

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQS 437
           M  QV +  K  R   L +         N   VG    VLI++   + G +VGR+   + 
Sbjct: 325 MPRQVPDAEKKRRSKILSEVSLRVARLRNGLRVGSRDVVLIDEV--DHGLVVGRASDYRQ 382

Query: 438 VVLNS--KNHNIGDIIKVRITDVKISTLYGELV 468
           VV+     +  IG   +V+I       LYG++V
Sbjct: 383 VVVKRGHGDGLIGQYREVQIVAAGAVYLYGDIV 415


>gi|111225093|ref|YP_715887.1| hypothetical protein FRAAL5734 [Frankia alni ACN14a]
 gi|122953811|sp|Q0RDV0|RIMO_FRAAA RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|111152625|emb|CAJ64366.1| Conserved hypothetical protein [Frankia alni ACN14a]
          Length = 545

 Score =  296 bits (758), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 114/429 (26%), Positives = 183/429 (42%), Gaps = 35/429 (8%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           VP+R  + + GC  N  DS  +     +QG+E V    DAD +++NTC   + A +    
Sbjct: 5   VPRRVALVTLGCSRNEVDSEELAGRLAAQGWELVADAADADAVLVNTCGFVDAAKKDSID 64

Query: 83  FLGRIRNLK--NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140
            L    +L+  +      G   VV  GC+A+  G E+    P  + V+G   Y  + E L
Sbjct: 65  ALLAADDLRAGDGEPAGAGPRAVVAVGCLAERYGNELAASLPEADAVLGFDAYPSIGEHL 124

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVD--------------------------GGYNRKR 174
           +    G  V    ++  D+   L I                            G   R+R
Sbjct: 125 DAVLGGATV--PAHTPRDRRTLLPITPVERGASANVAVHVPGHARGVAGGSAAGSPGRRR 182

Query: 175 ---GVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQN 231
              G  A L I  GCD+ C FC +P  RG  +SR    V+ EA  L   G  E+ L+ +N
Sbjct: 183 LTAGPVAALKISSGCDRRCAFCAIPSFRGSHVSRPADDVLAEAEWLAGEGARELVLVSEN 242

Query: 232 VNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL 291
             +  GK L G+      LL  L+ + G+VR+R     P ++   L++       L PYL
Sbjct: 243 STS-YGKDL-GDLRALEKLLPQLAAVPGIVRVRTVYLQPAELRPSLLEVLLTTPGLAPYL 300

Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351
            L  Q  S  +L+ M R   +  +  ++DR R + P +   S+ IVGFPGET+ D     
Sbjct: 301 DLSFQHASPAVLRRMRRFGGSEHFLDLLDRGRGLLPGLGARSNVIVGFPGETEADVDILA 360

Query: 352 DLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVG 411
           + ++         F YS   GT   ++  ++ E     R + +   + +   +     +G
Sbjct: 361 EFLEAAELDAVGVFGYSDEEGTEAVSLPGKIAEEEIERRRVQITDLVEQLTATRAQERIG 420

Query: 412 QIIEVLIEK 420
             ++VL+E+
Sbjct: 421 SRVQVLVEE 429


>gi|303325954|ref|ZP_07356397.1| MiaB tRNA modifying enzyme-like protein [Desulfovibrio sp.
           3_1_syn3]
 gi|302863870|gb|EFL86801.1| MiaB tRNA modifying enzyme-like protein [Desulfovibrio sp.
           3_1_syn3]
          Length = 442

 Score =  296 bits (757), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 122/449 (27%), Positives = 195/449 (43%), Gaps = 30/449 (6%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYER--VNSMDDADLIVLNTCHIREKAAEKVYSFL 84
            +  S GC  N  DS R+       G     V  M  A L+ +NTC     A  +    +
Sbjct: 12  VWSLSLGCPKNRVDSERLLGSL---GLPVKSVAQMGRARLVFINTCGFIAPAVRES---V 65

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG-EEILRRSPIVNVVVGPQTYYRLPELLERA 143
             + +  N   +     L+ VAGC+    G EE+ R  P V++ +        P +L RA
Sbjct: 66  RAVLDAVNRLARCKNKPLLAVAGCMVGRYGAEELARELPEVDLWLPTGDLADWPAMLARA 125

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
               R+ +   S            G         A+L I EGC   C FC +P  RG   
Sbjct: 126 LGLPRLPEGPGS-----------GGRLLSTGPSYAWLKIGEGCRHNCAFCTIPSIRGGLR 174

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           S  +S ++ EAR L++ GV E+ L+ Q+V AW G    GEK +   LL  L  + GL  L
Sbjct: 175 SEPVSDLLAEARGLLEQGVRELVLVAQDVTAWGGDL--GEKKSLLHLLEGLLGLDGLAWL 232

Query: 264 RYTTSHPRDMSDCLIKAHGDLD-VLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           R    +P  ++  L++   +    L+PYL +P+Q     +L  M R       R+++DR+
Sbjct: 233 RLLYLYPSGVTPELLRFMRESGGPLLPYLDIPLQHAHPEVLARMGRPFAGDP-RRVLDRV 291

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R   P+ A+ + FIVG+PGE++  F +    V++  +     F Y    GT  + + +QV
Sbjct: 292 RDALPEAAVRTTFIVGYPGESEAHFDSLCRFVEESRFQNMGVFAYQAEEGTKAAGLPDQV 351

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGR----SPWLQS 437
            E ++  R   L +       S     VGQ + VL++  H +  G   GR    SP +  
Sbjct: 352 PEEIRERRRATLMEIQAGISESLLAERVGQRLPVLVDAPHPEWPGLHSGRVWFQSPEVDG 411

Query: 438 V-VLNSKNHNIGDIIKVRITDVKISTLYG 465
           +  ++    + G +++  I +     L  
Sbjct: 412 MTYVSGPGVSPGALVECDIVENAEYDLTA 440


>gi|195953930|ref|YP_002122220.1| MiaB-like tRNA modifying enzyme [Hydrogenobaculum sp. Y04AAS1]
 gi|195933542|gb|ACG58242.1| MiaB-like tRNA modifying enzyme [Hydrogenobaculum sp. Y04AAS1]
          Length = 411

 Score =  296 bits (757), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 105/390 (26%), Positives = 178/390 (45%), Gaps = 18/390 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +F V + GC+MN +D   +       GYE+       D+ ++NTC +  +A       + 
Sbjct: 2   KFKVINLGCRMNQFDGDFISSWLLKHGYEKSEIP---DIYIINTCSVTSQADRSSRQAIY 58

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           + +       KE  + +V+  GC AQ + E +  +   V++V+G      + E ++    
Sbjct: 59  QAK-------KENPNAIVIATGCYAQTQKEAL-EKIKEVDIVLGNANRTDILEAIKNHLD 110

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            K+ +     V++ F +  I             FL IQEGC+ FC+FC++P+ RG   S 
Sbjct: 111 TKQKLS---HVDNIFRQNDIAFQEDIIFENHRPFLKIQEGCNSFCSFCIIPFARGKSRSV 167

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
               ++   + L + G  E+ L G  + +  G+    +  +   LL  L +I   +RL  
Sbjct: 168 DEELIIKSVQNLYEKGYKEVVLTGTQL-SQYGQD---KGTSLYKLLKKLLKIPMFIRLSS 223

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
              +       L+    +   +MP+ HL +QS SD++LK+M R +T  EY +++  I   
Sbjct: 224 MNVNEIKTDKELLDLITEEPNIMPHFHLSLQSASDKLLKAMRREYTLKEYEEVVSYIIKK 283

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
           RP  AI +D IVGFP E  +DF  T   +    +A    F YS R  T    +  +VD N
Sbjct: 284 RPISAIGTDIIVGFPTENHEDFNITYIFLKDFPFAYLHIFTYSDRPLTKAQKLTPKVDSN 343

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIE 415
            K ER   L    +E++  F  +  G+ + 
Sbjct: 344 TKKERSKLLHNLDQEKREHFRASMKGKTLR 373


>gi|110597800|ref|ZP_01386083.1| MiaB-like tRNA modifying enzyme [Chlorobium ferrooxidans DSM 13031]
 gi|110340525|gb|EAT59008.1| MiaB-like tRNA modifying enzyme [Chlorobium ferrooxidans DSM 13031]
          Length = 448

 Score =  296 bits (757), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 117/463 (25%), Positives = 211/463 (45%), Gaps = 36/463 (7%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +R    + GC++N  ++  + +   SQG+++ +  + A+LI+++TC +  +A +K    +
Sbjct: 2   KRVAAVTLGCKLNYAETSSILESLCSQGWKQSSIEEGAELIIIHTCAVTAQAEKKCRQKI 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG---PQTYYRLPELLE 141
                     I+   D  + V GC AQ   + +      ++ ++G           +++ 
Sbjct: 62  R-------GIIRNNPDSRIAVIGCYAQLNPDAL-SAIKGIDAILGSKEKFAIKWYDDIMA 113

Query: 142 RARFGKRVVDTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
            A     V  + + ++D       S    G++R R   AFL IQ+GCD  C++C +P  R
Sbjct: 114 GAVSLPLVKVSQHGLKDAVYPGYSSTSVEGHDRTR---AFLKIQDGCDSGCSYCTIPLIR 170

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G   S    ++V  A  L  +G  EI L G N+  +   G+        +LL  L ++  
Sbjct: 171 GRSRSLPPDEIVARAMILASSGYREIVLTGVNIGDYLENGI-----GLPELLRRLEKVP- 224

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           + R+R ++  P  +    I+   +   ++P+LH+P+QSGSDRILK+M RR+    YR+ +
Sbjct: 225 VSRIRISSIEPDVVDSEFIELVANSKTIVPHLHIPLQSGSDRILKAMRRRYDTALYRERV 284

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP----- 374
             + +   D +I +D +VGFPGE+++DF      ++++  A    F  S R GT      
Sbjct: 285 SGVAAHISDCSIGADVMVGFPGESEEDFLQICRFIEELPLAYLHVFSCSIRPGTALARQT 344

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG---KLVGR 431
            S  L  V     A R   L    R ++ +F +  +G    VL E+  +E     +  G 
Sbjct: 345 ASRELIAVAPAEIARRSRVLNDLGRRKEAAFKERYIGTKCMVLFEECRQEINGIPQSCGY 404

Query: 432 SPWLQSVVLNSKN-----HNIGDIIKVRITDVKIS-TLYGELV 468
           S     V+++          +G  + V I  +     L G L+
Sbjct: 405 SRNYLRVLVDRAGRGEEYSLVGKELPVLIERLDEDLNLQGRLL 447


>gi|149045299|gb|EDL98385.1| CDK5 regulatory subunit associated protein 1-like 1 (predicted),
           isoform CRA_b [Rattus norvegicus]
          Length = 442

 Score =  296 bits (757), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 104/387 (26%), Positives = 180/387 (46%), Gaps = 16/387 (4%)

Query: 14  VSQIVDQCIVP-QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHI 72
            S   D  I   Q+ +++++GC  N  D   M     + GY+   +  DADL +LN+C +
Sbjct: 51  PSPPSDSTIPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTV 110

Query: 73  REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT 132
           +  A +   + + +                VV+AGCV QA+  +   +      ++G Q 
Sbjct: 111 KNPAEDHFRNSIKKAHEENKK---------VVLAGCVPQAQPRQDYLKG---LSIIGVQQ 158

Query: 133 YYRLPELLERARFGKRVVDTDYSVED-KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCT 191
             R+ E++E    G  V       E  K    + +D    RK  +   ++I  GC   CT
Sbjct: 159 IDRVVEVVEETIKGHSVRLLGQKKESGKRLGGARLDLPKIRKNPLIEIISINTGCLNACT 218

Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLL 251
           +C   + RG   S  + ++V+ A++    GVCEI L  ++  A  G+ +  +  T    L
Sbjct: 219 YCKTKHARGNLASYPIDELVERAKQSFQEGVCEIWLTSEDTGA-YGRDIGTDLPTLLWKL 277

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
             +     ++RL  T           +    +   +  +LH+PVQS SD +L  M R + 
Sbjct: 278 VEVIPEGAMLRLGMTNPPYILEHLEEMAKILNHPRVYAFLHIPVQSASDSVLMDMKREYC 337

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
             ++++++D ++   P I I++D I GFPGETD DF+ T+ LV++  +   F  ++ PR 
Sbjct: 338 VADFKRVVDFLKEKVPGITIATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRP 397

Query: 372 GTPGSNMLEQVDENVKAERLLCLQKKL 398
           GTP +   +QV  +VK +R   L +  
Sbjct: 398 GTPAAK-AKQVPAHVKKQRTKDLSRVF 423


>gi|41614804|ref|NP_963302.1| hypothetical protein NEQ008 [Nanoarchaeum equitans Kin4-M]
 gi|40068528|gb|AAR38863.1| NEQ008 [Nanoarchaeum equitans Kin4-M]
          Length = 413

 Score =  296 bits (757), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 113/443 (25%), Positives = 205/443 (46%), Gaps = 34/443 (7%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + + +SYGC +N  D+L M+           N++++AD++V+N+C +++    K+   + 
Sbjct: 2   KVYFESYGCTLNKRDTLYMQAQIE----NTTNNLEEADVVVINSCIVKQPTETKILYRIN 57

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           +++ +            +V+ GC+      +      I  V +  Q   R+ E +ER   
Sbjct: 58  QLKKMGKK---------IVLTGCMVSEPYLKYKELQDISLVNIYNQD--RIKEAIERTYK 106

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G+RV+          E+  I            A + IQEGC   CT+C     R +  S 
Sbjct: 107 GERVL--------FLEKKKIYKEFARPLSKARAIIQIQEGCLWRCTYCGTKLARSMFYSY 158

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
               +  E  + +  G+    L G +  A  GK ++    + +DLL  L EI+G   +R 
Sbjct: 159 PPKLIKREIEEKLKQGIKIFYLTGPDT-ATYGKDIN---YSLADLLKDLIEIEGDFYIRV 214

Query: 266 TTSHPRDM---SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
             ++P       D LI      + +  + HLPVQSGS+++LK MNR +T  EY+++I ++
Sbjct: 215 GMANPTFFLEQIDELIDVF-KSNKIFKFFHLPVQSGSNKVLKDMNRPYTIEEYKELIYKL 273

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R   P     +D IVG+P ET++DF  T++LV +I +      ++  R GT   N+ +Q+
Sbjct: 274 RKHFPLATYVTDIIVGYPTETEEDFEQTLELVREIKFDGINISRFWRRPGTIAWNL-KQL 332

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
           D  +   R+  L++   +     N   +    E +IE+ GK     + ++   + +++  
Sbjct: 333 DPEIVTNRVKRLKEVFLQGAYERNKLWLNWEGEAIIEEKGK-NNTWIAKNEMYKQIIVKG 391

Query: 443 KNHNIGDIIKVRITDVKISTLYG 465
            N+  G  IKV+I   +   L  
Sbjct: 392 -NYEEGQKIKVKIKKARAIDLIA 413


>gi|289642441|ref|ZP_06474587.1| MiaB-like tRNA modifying enzyme YliG [Frankia symbiont of Datisca
           glomerata]
 gi|289507786|gb|EFD28739.1| MiaB-like tRNA modifying enzyme YliG [Frankia symbiont of Datisca
           glomerata]
          Length = 485

 Score =  296 bits (757), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 116/471 (24%), Positives = 189/471 (40%), Gaps = 31/471 (6%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +R  + + GC  N  DS  +       G+  V+    AD +V+NTC   + A +     L
Sbjct: 7   RRVALITLGCARNDVDSEELAARLGGDGWAVVDDPVTADAVVVNTCGFVDVAKKDSIDTL 66

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
               +L+++    GG   VV  GC+A+  G ++    P  + V+G   Y  L   L+   
Sbjct: 67  LAAADLRDAATDAGGPKAVVAVGCLAERYGRQLADSLPEADAVLGFDAYPTLGSHLDAVL 126

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKR-----------------GVTAFLTIQEGCD 187
            G++              ++ VD    R                   G  A L I  GCD
Sbjct: 127 RGEKPAAHTPRDRRTLLPITPVDRQAERTERAGPASGPPVLRQRLLGGPVASLKISSGCD 186

Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTF 247
           + C FC +P  RG  +SR    V+ EA  L   GV E+ L+ +N  +  GK L G+    
Sbjct: 187 RRCAFCAIPTFRGAHVSRPPQDVLAEAEWLAGQGVRELVLVSENSTS-YGKDL-GDLRAL 244

Query: 248 SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307
             LL  L+ I G+VR+R     P ++   L++       + PYL L  Q  S  +L+ M 
Sbjct: 245 EKLLPQLAAIAGVVRVRAVYLQPAEVRPSLLETVLTTPGVAPYLDLSFQHASPSVLRRMR 304

Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           R   A  +  ++ R R++ PD+   S+ IVGFPGET  D       +          F Y
Sbjct: 305 RFGGADAFLDLLARARALAPDLGARSNVIVGFPGETRADVALLERFLTDADLDAVGVFGY 364

Query: 368 SPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK 427
           S   GT  + +  +V       R   +   + +   +     +  ++E  +       G 
Sbjct: 365 SDEDGTEAATLPGKVTPATVRRRQARVTDLVEQLTAARAQQRLSSVVE--VLVEEVAGGL 422

Query: 428 LVGRS----PWLQS---VVLNSKNH---NIGDIIKVRITDVKISTLYGELV 468
             GR+    P +     V L +       +GD++  ++   +   L  EL+
Sbjct: 423 AHGRAAHQQPEVDGACTVRLPAAEAARVRVGDLVSAKVVASEGVDLVAELL 473


>gi|254561877|ref|YP_003068972.1| MiaB-like tRNA modifying enzyme, 2-methylthioadenine synthetase
           [Methylobacterium extorquens DM4]
 gi|254269155|emb|CAX25121.1| MiaB-like tRNA modifying enzyme, putative 2-methylthioadenine
           synthetase [Methylobacterium extorquens DM4]
          Length = 410

 Score =  296 bits (757), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 117/435 (26%), Positives = 188/435 (43%), Gaps = 32/435 (7%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           ++GC++N  +S  +               +  DL+V+NTC +  +A  +    + R+   
Sbjct: 7   TFGCRLNTVESEVLRGHAE-------PGAEGRDLVVVNTCAVTAEAGRQARKAIRRL--- 56

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
                +E     +VV GC A+ E        P V  +VG     R        + G    
Sbjct: 57  ----SRERPGAEIVVTGCGAEVERAS-YAAMPEVTRLVGNAAKLRPESW----QSGTAPA 107

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
             D       E   I     + +    AF+ +Q GCD  CTFCV+P+ RG   S  +++ 
Sbjct: 108 PEDIMAVRTAEPTHITTMSGHTR----AFVPVQNGCDHRCTFCVIPFGRGNSRSVPVAEA 163

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270
           V +  +++++G  E+ L G ++ A  G+ LD +      +   L+E+  L RLR ++   
Sbjct: 164 VAQVCRIVEHGGREVVLTGVDLTA-YGRDLDSDLSLGRLVRTILAEVPDLARLRLSSIDS 222

Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330
            +    LI A  +   LMP++HL +Q+G D ILK M RRH+  +  ++ + +R +RP + 
Sbjct: 223 VEADAELIAAFAEEPRLMPHVHLSLQAGDDLILKRMKRRHSRADAIRLCETLRELRPGLV 282

Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER 390
             +D I GFP ET   F  ++DLV + G      F YSPR  TP + M   V  +V   R
Sbjct: 283 FGADLIAGFPTETAAQFVRSLDLVAECGLTHLHVFPYSPRPNTPAARMP-AVPGDVVRAR 341

Query: 391 LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDI 450
              L++          D  VG    VL E+         GR+     V  +      G+I
Sbjct: 342 AARLREAGAAALARHLDGEVGARRRVLTERGD------TGRTEAFSLVRFSG-PVPAGEI 394

Query: 451 IKVRITDVKISTLYG 465
             V +T      L  
Sbjct: 395 RDVTVTGHDGQALLA 409


>gi|20090019|ref|NP_616094.1| 2-methylthioadenine synthase [Methanosarcina acetivorans C2A]
 gi|19914987|gb|AAM04574.1| 2-methylthioadenine synthase [Methanosarcina acetivorans C2A]
          Length = 435

 Score =  296 bits (757), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 111/450 (24%), Positives = 203/450 (45%), Gaps = 24/450 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEKVYSF 83
           + +++S+GC  ++  +  M+      G+E +N     +A++ + N+C ++    +K+   
Sbjct: 2   KVYLESFGCSASLASAEIMKASVERLGHELLNPAAAGEAEVYICNSCTVKYTTEQKILYK 61

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE-- 141
           +  +             + V+V+GC+ + + EEIL  +P  + ++G     RL ELL   
Sbjct: 62  IRSMGE---------KGVQVIVSGCMPEVQLEEILHANPEAH-ILGVNAISRLGELLSSI 111

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
             R  + +    +      E L  ++    R         I +GC+  C++C+V + RG 
Sbjct: 112 EQRRMEGLPAGGHLELRTSEPLGFLNVPRERSNPNIHICQISQGCNFACSYCIVKHARGK 171

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
             S    ++V + R  + +G  EI L  Q+ ++  G           +LL  +SEI G  
Sbjct: 172 LRSFPPEKIVKDIRSAVADGCREIWLTSQD-DSQYGMDT---GVKLPELLRMISEIPGDF 227

Query: 262 RLRYTTSHPRDMSDCL---IKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           ++R    +P  +   L   + A  D D +   LHLP+QS S  +LK MNR H      +I
Sbjct: 228 KVRVGMMNPFSVLPILDGLVDAF-DSDKVFKLLHLPIQSASHSVLKKMNRLHKMDAVDEI 286

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           I + R+   D+++ +D IVGF  ETD+DF  T++ V K    +    +YSPR  T   + 
Sbjct: 287 ITKFRARFEDLSLFTDIIVGFCDETDEDFEETIEWVKKYRPEKINISRYSPRPHTKAFSF 346

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSV 438
              +D  +  +R   L K   + ++      +G    V + K+ +    L  R+   + V
Sbjct: 347 RN-LDSRISVQRSHELHKVCEQIKLGSKQEMIGWKGRVFVSKYTEIGDVLT-RTDAYRPV 404

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           V++  +   G+   V IT  K     G ++
Sbjct: 405 VISGSDLKPGEYANVEITGAKPGYFLGRII 434


>gi|222823299|ref|YP_002574872.1| radical SAM domain family (UPF0004 domain protein) [Campylobacter
           lari RM2100]
 gi|222538520|gb|ACM63621.1| conserved hypothetical protein, radical SAM domain family (UPF0004
           domain protein) [Campylobacter lari RM2100]
          Length = 438

 Score =  296 bits (757), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 109/444 (24%), Positives = 203/444 (45%), Gaps = 31/444 (6%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           +P + F+ S GC  N+ DS  M     +  YE  +    AD++++NTC   E A ++  +
Sbjct: 1   MP-KLFLMSLGCNKNLVDSEIMLGRLSN--YEICDEPSIADVLIVNTCGFIESAKKESIN 57

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +  +   +        D L+VV GC+ Q   EE+++  P V++  G   Y ++ E++  
Sbjct: 58  AILDLHEQRKK------DSLLVVTGCLMQRYREELMKELPEVDLFSGVGDYEKIDEMI-- 109

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            +      ++ Y  ++   R+              AF+ I EGC++ C+FC +P  +G  
Sbjct: 110 LKKTNLFSNSTYLQDENTNRV-------ITGSNYHAFVKIAEGCNQKCSFCAIPSFKGKL 162

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SRSL  +V+E + L++ G  + + + Q+ +++      G+K     L+ ++  IKG+  
Sbjct: 163 KSRSLESIVNEVKSLVEKGYKDFSFIAQDTSSYLFD--QGQKDGLIKLIDAIESIKGIKA 220

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
            R    +P  +S  +I+      V + Y  +P+Q  SD +LK M R     +  ++++ +
Sbjct: 221 ARILYLYPTSISKEVIEKIIHSKVFVNYFDMPLQHISDNMLKIMKRGMNKTKLIELLNLM 280

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R   P+  + + FIVG PGE+DDDF    + + +  + +   F YS    T   NM EQ+
Sbjct: 281 RKA-PNSFLRTGFIVGHPGESDDDFNELCEFLKEFSFDRISVFAYSKEEDTAAFNM-EQI 338

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG----R-SPWLQS 437
              +   RL  ++K +        D  VG+ +    E    E    +G    R    +  
Sbjct: 339 PFKIINSRLKKIEKIVDFCIEKSFDKEVGKKVLAFCEGQSSEGEFFIGAKDLRWDKNIDG 398

Query: 438 VVL----NSKNHNIGDIIKVRITD 457
            +L       +  +G++ +  IT 
Sbjct: 399 EILINESECGDLEMGELYECEITQ 422


>gi|148700454|gb|EDL32401.1| CDK5 regulatory subunit associated protein 1-like 1, isoform CRA_a
           [Mus musculus]
          Length = 444

 Score =  296 bits (757), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 102/386 (26%), Positives = 182/386 (47%), Gaps = 17/386 (4%)

Query: 16  QIVDQCIVP--QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIR 73
           +      +P  Q+ +++++GC  N  D   M     + GY+   +  DADL +LN+C ++
Sbjct: 52  RPPSDSTIPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVK 111

Query: 74  EKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTY 133
             A +   + + + +              VV+AGCV QA+  +   +      ++G Q  
Sbjct: 112 NPAEDHFRNSIKKAQEENKK---------VVLAGCVPQAQPRQDYLKG---LSIIGVQQI 159

Query: 134 YRLPELLERARFGKRVVDTDYSVED-KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTF 192
            R+ E++E    G  V       ++ K    + +D    RK  +   ++I  GC   CT+
Sbjct: 160 DRVVEVVEETIKGHSVRLLGQKKDNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTY 219

Query: 193 CVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLY 252
           C   + RG   S  + ++V+ A++    GVCEI L  ++  A  G+ +  +  T    L 
Sbjct: 220 CKTKHARGNLASYPIDELVERAKQSFQEGVCEIWLTSEDTGA-YGRDIGTDLPTLLWKLV 278

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
            +     ++RL  T           +    +   +  +LH+PVQS SD +L  M R +  
Sbjct: 279 EVIPEGAMLRLGMTNPPYILEHLEEMAKILNHPRVYAFLHIPVQSASDSVLMDMKREYCV 338

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
            ++++++D ++   P I I++D I GFPGETD DF+ T+ LV++  +   F  ++ PR G
Sbjct: 339 ADFKRVVDFLKEKVPGITIATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPG 398

Query: 373 TPGSNMLEQVDENVKAERLLCLQKKL 398
           TP +   EQV  +VK +R   L +  
Sbjct: 399 TPAAK-AEQVPAHVKKQRTKDLSRVF 423


>gi|307298742|ref|ZP_07578545.1| MiaB-like tRNA modifying enzyme [Thermotogales bacterium
           mesG1.Ag.4.2]
 gi|306915907|gb|EFN46291.1| MiaB-like tRNA modifying enzyme [Thermotogales bacterium
           mesG1.Ag.4.2]
          Length = 425

 Score =  295 bits (756), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 117/439 (26%), Positives = 205/439 (46%), Gaps = 31/439 (7%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + Q+  + ++GC+MN Y+S  M +M     YE   S D ADL ++N+C +  +A  K+  
Sbjct: 1   MKQKVSIYTFGCKMNQYESQAMAEMLHD--YEVGFSQDKADLFIVNSCTVTSEAERKLRQ 58

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
              R++ L         +  +++ GC +Q    E+       + V+G +    + + + R
Sbjct: 59  LFRRLKGL-------NPNSKIIITGCYSQLSPNELREL--GADEVIGVREKKAIHKYVSR 109

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG-I 201
                  V          E L++      R R   AFL I++GC   C++C V   RG  
Sbjct: 110 QLNRPDGVAPS-------EFLTVTSSIEGRTR---AFLGIEDGCLNCCSYCRVRLARGSK 159

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
            IS+ +  V  E   L+  G  EI L G N+  + G  LD    +   LL  L +++G  
Sbjct: 160 IISKPIDLVKREFEGLVSRGYREIVLTGINIG-YYGFDLD---SSLVKLLIELDKLEGEW 215

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R  +  P  +   L+        +  +LHL +QSGS+RIL++M R++T  EY + +DR
Sbjct: 216 RIRLGSLDPDRVDGELLHLITTSRRMARHLHLSLQSGSNRILRAMRRKYTVDEYLRAVDR 275

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
            RSV    A ++D I GFPGE D D + ++ +V+++ + +   F++S R GT  + M +Q
Sbjct: 276 ARSVDTRFAFTTDLIAGFPGENDSDHKESLKVVEQVEFLKVHVFRFSRRPGTEAAEMKDQ 335

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           +D   K  R   L +  +  +  + +  +G+   VLI+K G  +    G   +     + 
Sbjct: 336 IDSGTKKARSHELIEAGKRSRKKYLERQIGRKACVLIQKTGHTES--SGFDEFYAPHAIE 393

Query: 442 SKNHNIGDIIKVRITDVKI 460
             +      +   I  ++ 
Sbjct: 394 GAHEG---FVNATIISIES 409


>gi|152990825|ref|YP_001356547.1| tRNA modifying enzyme [Nitratiruptor sp. SB155-2]
 gi|151422686|dbj|BAF70190.1| tRNA modifying enzyme [Nitratiruptor sp. SB155-2]
          Length = 410

 Score =  295 bits (755), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 123/429 (28%), Positives = 209/429 (48%), Gaps = 33/429 (7%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + F K++GC+ N++D+  M        +    + +DAD++V+N+C +   A   V +++ 
Sbjct: 2   KVFFKTFGCRTNLFDTQVMMSKLKD--FTITQNEEDADIVVVNSCTVTNGADSSVRNYIN 59

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           RI+          G+  + + GC A  +GEE+  +   V  V G     R+ +LL++ +F
Sbjct: 60  RIQK---------GNKKIYLTGCGAFTKGEELFEK-KKVIGVFGHSEKERINDLLKKEQF 109

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            +     D    DK    +IV     + R   AF+ IQEGCD  C++C++PY RG   S 
Sbjct: 110 FQ---LGDLESVDK----TIVSEFIGKSR---AFIKIQEGCDFRCSYCIIPYVRGNARSM 159

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
             S ++++ +KL  NG  E  L G NV +  GK  D    + + LL  ++ I+G+ R+R 
Sbjct: 160 DESLILEQIQKLASNGFGEFILTGTNVGS-YGKDKD---TSLAKLLKKIAMIRGVRRIRL 215

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
            +  P  ++D   K   D   +  +LH+ +Q  SD +L+ MNRR+   E  Q+ + I   
Sbjct: 216 GSIEPIQITDEF-KEILDEPWMAKHLHIALQHTSDTMLEIMNRRNRVKEDLQLFEEI--A 272

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
               AI +DFIVG PGE++  F    + +          F YS R GTP ++M   V  N
Sbjct: 273 SHGYAIGTDFIVGHPGESEAIFEEAYENLKLFPLTHIHLFTYSKRDGTPSASMKPHVLGN 332

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445
           V  ER   +Q+ ++++   F        + VL+E  G+++G   G   +   V + S   
Sbjct: 333 VAKERYKKIQELVKQKNFDFRKKQ--SDLYVLVE--GEKRGHYFGYDQFYNPVFIESALD 388

Query: 446 NIGDIIKVR 454
             G+ + + 
Sbjct: 389 LKGNWVNIH 397


>gi|154149538|ref|YP_001406090.1| hypothetical protein CHAB381_0502 [Campylobacter hominis ATCC
           BAA-381]
 gi|238065316|sp|A7I0P9|RIMO_CAMHC RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|153805547|gb|ABS52554.1| conserved hypothetical protein [Campylobacter hominis ATCC BAA-381]
          Length = 433

 Score =  295 bits (755), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 97/455 (21%), Positives = 202/455 (44%), Gaps = 32/455 (7%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           +P + F++S GC  N+ DS  M        +E  +   +AD++++NTC     A ++   
Sbjct: 1   MP-KVFLQSLGCNKNLVDSEIMLGALRD--FEVTDIPKEADVLIVNTCGFINSAKQESIR 57

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +  +  ++          ++ V GC+ Q   +E+++  P V++  G   +  + +++  
Sbjct: 58  AILELCEIRKK------GSILAVTGCLMQRYKDELIKELPDVDIFSGVGDFGEIDKMI-- 109

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
              GK    +D +   K E   I    ++      A++ I EGC++ C+FC +P  +G  
Sbjct: 110 --AGKLSKFSDETFLQKNENRVITGTNFH------AYIKISEGCNQKCSFCAIPSFKGRL 161

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR +  +V E   L++ G  + + + Q+ +++ G+ + G K     L+  + +I G+  
Sbjct: 162 KSRDIQNIVSEVEMLVERGYYDFSFIAQDTSSF-GRDI-GLKNGLISLIKEIEKINGVKI 219

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
            R    +P   +  L++   D  V + Y  +P+Q  +D +LK M R +   E  +++  +
Sbjct: 220 ARILYLYPTTTNKELLQVIIDSPVFVNYFDMPIQHINDEMLKIMKRGNGKAEILELLQTM 279

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+ + +  + +  IVG PGE+++ F      + +  + +   F YS    T    M +Q+
Sbjct: 280 RAAK-NSFLRTGIIVGHPGESEEYFDELCRFLQEFKFDRISVFAYSKEEDTASFEM-KQI 337

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG-----RSPWLQS 437
            +N+  +RL  + K           A +G      I     E     G         +  
Sbjct: 338 PQNIIKKRLNKIAKIADRAIDESFRALIGTEQMAEICGFSSEGEFFYGAKLAIWDFEIDG 397

Query: 438 VVLNSKNHN----IGDIIKVRITDVKISTLYGELV 468
            +L +++      +G + K++ITD     L  +++
Sbjct: 398 EILINESELENVEVGGLYKIKITDFVGGKLLAKII 432


>gi|89067277|ref|ZP_01154790.1| MiaB-like tRNA modifying enzyme [Oceanicola granulosus HTCC2516]
 gi|89046846|gb|EAR52900.1| MiaB-like tRNA modifying enzyme [Oceanicola granulosus HTCC2516]
          Length = 418

 Score =  295 bits (755), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 124/440 (28%), Positives = 195/440 (44%), Gaps = 35/440 (7%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
             + GC++N Y++  M+ +    G         +D +V+NTC +  +A  K    + R+R
Sbjct: 7   FTTMGCRLNAYETEAMKALAEQAGL--------SDALVVNTCAVTAEAVRKAKKEIRRLR 58

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA----- 143
                  +E  +  ++V GC AQ E E      P V  ++G     +       A     
Sbjct: 59  -------RENPEAPLIVTGCAAQTEPETFAA-MPEVTRIIGNTEKMQPETWAAMAPDLIG 110

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
              +  VD   SV +    L  +DG   R R   A++ +Q GCD  CTFC++P+ RG   
Sbjct: 111 ETERVAVDDIMSVTETAGHL--IDGFGTRSR---AYVQVQNGCDHRCTFCIIPFGRGNSR 165

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           S     VV++ ++L+D G  E+ L G ++ +W G  L  +      ++  L  +  L RL
Sbjct: 166 SVPAGVVVEQIKRLVDRGYNEVVLTGVDLTSW-GGDLPAQPRLGDLVMRILRLVPDLPRL 224

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R ++    +  D L+ A      LMP+LHL +Q G D ILK M RRH   +  +  +  R
Sbjct: 225 RISSIDSIEADDNLMLAIATEPRLMPHLHLSLQHGDDLILKRMKRRHLRDDAIRFTEEAR 284

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
            +RPD+   +D I GFP ET+  F  ++ LV++        F YSPR GTP + M   V 
Sbjct: 285 RLRPDMTFGADIIAGFPTETEAHFANSLRLVEECDLTWLHVFPYSPRAGTPAARMP-AVP 343

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
                ER   L+     +  +   A VG+   VL+E         +GR+     V   + 
Sbjct: 344 GPAIRERAARLRAAGAARVAAHLAAQVGRAHSVLMESP------RMGRTEQFTEVAFAAD 397

Query: 444 NHNIGDIIKVRITDVKISTL 463
                 I+   I  V  + L
Sbjct: 398 QPET-AIVPATIRAVTGTRL 416


>gi|148925626|ref|ZP_01809314.1| hypothetical protein Cj8486_1492c [Campylobacter jejuni subsp.
           jejuni CG8486]
 gi|145845636|gb|EDK22727.1| hypothetical protein Cj8486_1492c [Campylobacter jejuni subsp.
           jejuni CG8486]
          Length = 439

 Score =  295 bits (755), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 110/439 (25%), Positives = 201/439 (45%), Gaps = 30/439 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + ++ S GC  N+ DS  M     +  YE  +    AD+I++NTC   + A ++  + + 
Sbjct: 3   KLYLMSLGCNKNLVDSEIMLGRLSA--YELCDEPSKADVIIVNTCGFIDSAKKESINAIL 60

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +   +        D L+VV GC+ Q   EE+++  P V++  G   Y R+ E++   + 
Sbjct: 61  DLHEQRKK------DSLLVVTGCLMQRYREELMKELPEVDLFTGVGDYERIDEMI--LKK 112

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                ++ Y   +  +R+      +       AF+ I EGC++ C+FC +P  +G   SR
Sbjct: 113 TNLFSNSTYLQSENSKRIITGSNSH-------AFIKIAEGCNQKCSFCAIPSFKGKLKSR 165

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            +S ++ E + L+  G  + + + Q+ +++      GEK     L+  + +IKG+   R 
Sbjct: 166 EISSIIAELKDLVARGYKDFSFIAQDTSSYLFD--KGEKDGLIRLIDEVEKIKGIRAARI 223

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
              +P   S+ LIK     ++ + Y  +P+Q  SD +LK M R   +   +++++ ++S 
Sbjct: 224 LYLYPTSASEALIKRIIASEIFVNYFDMPLQHISDNMLKIMKRGANSTRLKEMLNLMKSA 283

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P+  + + FIVG PGE++ DF    + V   G+ +   F YS    T   +M EQV   
Sbjct: 284 -PNSFLRTGFIVGHPGESEADFEELCEFVKDFGFDRVSVFAYSKEEDTAAFDM-EQVPFK 341

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG----R-SPWLQSVVL 440
           V  +RL  ++K + E      +  VGQ   V+      E    +     R    +   +L
Sbjct: 342 VINKRLKIIEKIVDEVIEKSFEKEVGQKRLVVCTGESSEGEFFIAAKDLRWDREIDGEIL 401

Query: 441 ----NSKNHNIGDIIKVRI 455
                  N  +G I +  I
Sbjct: 402 INESECGNLEMGQIYECEI 420


>gi|21228284|ref|NP_634206.1| hypothetical protein MM_2182 [Methanosarcina mazei Go1]
 gi|20906744|gb|AAM31878.1| hypothetical protein MM_2182 [Methanosarcina mazei Go1]
          Length = 435

 Score =  295 bits (755), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 107/449 (23%), Positives = 205/449 (45%), Gaps = 22/449 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERV--NSMDDADLIVLNTCHIREKAAEKVYSF 83
           + +++S+GC  +   +  M+      G+E +   +   A++ + N+C ++    +K+   
Sbjct: 2   KVYLESFGCSASQASAEIMKASIGKLGHELLSPENAGQAEVYICNSCTVKYTTEQKILYK 61

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +  +             + V+V+GC+ + + E+IL  +P  + ++G     RL +LL   
Sbjct: 62  IRSMGE---------KGVQVIVSGCMPEVQLEDILHANPEAH-ILGVNAVSRLGDLLSTI 111

Query: 144 RFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
              K+  +   +       E    ++    R         I +GC+  C++C+V + RG 
Sbjct: 112 EQRKKTGIPGGERLEIRTSEPQGFLNVPRERSNPNIHICQISQGCNFACSYCIVKHARGK 171

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
            +S    +++++ R  + +G  EI L  Q+ ++  G           +LL ++SEI G  
Sbjct: 172 LLSFPPEEIIEDIRSAVADGCREIWLTSQD-DSQYGMDT---GVKLPELLRAISEIPGDF 227

Query: 262 RLRYTTSHPRDMSDCLIKAHG--DLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           ++R    +P  +   L       D D +   LHLP+QS S  +LK MNR H      +II
Sbjct: 228 KVRVGMMNPFSVLPILDDLVDAFDSDKIFKLLHLPIQSASHSVLKKMNRLHKMDSVDEII 287

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            + R+   D+++ +D IVGF  ETD+DF  T++ V K    +    +YSPR  T   +  
Sbjct: 288 TKFRAHFEDLSLFTDIIVGFCDETDEDFEETIEWVKKYRPEKINISRYSPRPHTKAFSFR 347

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV 439
             +D  +  +R   L K   + ++   +  +G    V + K+ +    L  R+   + VV
Sbjct: 348 N-LDSRISVKRSHQLHKVCEQIKIESKNEMIGWKGRVFVSKYTEIGDVLT-RTDSYRPVV 405

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
           ++  +   G+  +V+IT  K     G+LV
Sbjct: 406 ISGSDLRPGEYAEVKITGAKPGYFLGKLV 434


>gi|163852140|ref|YP_001640183.1| MiaB-like tRNA modifying enzyme [Methylobacterium extorquens PA1]
 gi|163663745|gb|ABY31112.1| MiaB-like tRNA modifying enzyme [Methylobacterium extorquens PA1]
          Length = 410

 Score =  295 bits (755), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 121/435 (27%), Positives = 193/435 (44%), Gaps = 32/435 (7%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           ++GC++N  +S  +               +  DL+V+NTC +  +A  +    + R+   
Sbjct: 7   TFGCRLNTVESEVLRGHAE-------PGAEGRDLVVVNTCAVTAEAGRQARKAIRRL--- 56

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
                +E     +VV GC A+ E        P V  +VG     R        + G    
Sbjct: 57  ----SRERPGAEIVVTGCGAEVERAS-YAAMPEVARLVGNAAKLRPASW----QSGTAPA 107

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
             D       E   I     + +    AF+ +Q GCD  CTFCV+P+ RG   S  L++ 
Sbjct: 108 PEDIMAVRTAEPTHITTMSGHTR----AFVPVQNGCDHRCTFCVIPFGRGNSRSVPLAEA 163

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270
           V + R+++++G CE+ L G ++ A  G+ LD E      +   L+E+  LVRLR ++   
Sbjct: 164 VAQVRRIVEHGGCEVVLTGVDLTA-YGRDLDSELSLGRLVRTILAEVPDLVRLRLSSIDS 222

Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330
            +    LI A  +   LMP++HL +Q+G D ILK M RRH+  +  ++ + +R +RP + 
Sbjct: 223 VEADAELIAAFAEEPRLMPHVHLSLQAGDDLILKRMKRRHSRADAIRLCETLRDLRPGLV 282

Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER 390
             +D I GFP ET+  F  ++DLV + G      F YSPR  TP + M   V  +V   R
Sbjct: 283 FGADLIAGFPTETEAQFARSLDLVAECGLTHLHVFPYSPRPDTPAARMP-AVPGDVVRAR 341

Query: 391 LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDI 450
              L++          D  VG    VL E+         GR+     V  +      G+I
Sbjct: 342 AARLREAGAAALARHLDGEVGARRRVLTERGD------TGRTEAFSLVRFSG-PVPAGEI 394

Query: 451 IKVRITDVKISTLYG 465
            ++ +T      L  
Sbjct: 395 REITVTGHDGQALLA 409


>gi|85708149|ref|ZP_01039215.1| hypothetical protein NAP1_02900 [Erythrobacter sp. NAP1]
 gi|85689683|gb|EAQ29686.1| hypothetical protein NAP1_02900 [Erythrobacter sp. NAP1]
          Length = 391

 Score =  295 bits (755), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 117/423 (27%), Positives = 193/423 (45%), Gaps = 50/423 (11%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V S GC++N+ +S RM+ M    G          D++V+N+C +  +A  +    + + R
Sbjct: 6   VISLGCRLNIAESERMKGMLADAG----------DVVVVNSCAVTSEAVRQTRQAIRKAR 55

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
             +        D  ++V GC A  E +++    P V+ ++   +                
Sbjct: 56  AAR-------PDARLIVTGCAADIERDQLAA-MPEVDGLIANASKLDPRSW--------- 98

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
                            +           AF+ +Q GCD  CTFCV+P  RG   S +++
Sbjct: 99  --------------NVPLPEAPPPPTRTRAFIAVQNGCDHACTFCVIPQGRGKSRSMTIA 144

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
           +V+ E    +D G  E  L G +V +W G  L       + +   L+E   L RLR ++ 
Sbjct: 145 EVLREVEHHLDLGAKEAVLTGVDVTSW-GHDLPDTPPLGALVGAVLNEFPNLPRLRMSSL 203

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
              ++ + L +       LMP+LHL +Q G D ILK M RRH+  +   ++ RI+  RP+
Sbjct: 204 DGIEIDEALFELFASEKRLMPHLHLSLQHGHDLILKRMKRRHSRADAVDLVARIKQRRPE 263

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           IAI +D I GFP E+D+   A + ++D++       F YSPR GTP + M  QVD  +  
Sbjct: 264 IAIGADLIAGFPTESDEHHAANLSIIDELDIVHGHIFPYSPRPGTPAARMP-QVDRRIVK 322

Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIG 448
            R   L++++ E++ ++    VG+ +EVL E+ G       G +P    V L       G
Sbjct: 323 ARAAELRERVAERRAAWLTTLVGENLEVLAERDG------TGYAPSYARVDLPEGTP-AG 375

Query: 449 DII 451
            I+
Sbjct: 376 RIV 378


>gi|320451208|ref|YP_004203304.1| hypothetical protein TSC_c21520 [Thermus scotoductus SA-01]
 gi|320151377|gb|ADW22755.1| conserved hypothetical protein [Thermus scotoductus SA-01]
          Length = 437

 Score =  294 bits (754), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 113/443 (25%), Positives = 197/443 (44%), Gaps = 26/443 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R   ++ GC++N  ++  +     +   E V     ADL+V+NTC +   A       + 
Sbjct: 5   RAAFRTLGCKVNQVETEALLGFLKALEPEVVPLEAGADLVVINTCAVTTTAEADARKEIR 64

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R R       +      +VV GC A+   EE+       + VV       LP+++     
Sbjct: 65  RAR-------RANPGAFIVVTGCYAELSPEEVREL--GADAVVPNSRKAELPKVILEHFG 115

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
               + +D       E     + G    R V AFL +Q+GC   C +C++P  RG E  R
Sbjct: 116 ----LPSDPITTPPNEFWGAGERGLLNSR-VRAFLKVQDGCQVGCAYCIIPRLRGKERHR 170

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
                + EA  L+  G+ EI L G  + ++R     G     + L+  L  +   VRL  
Sbjct: 171 DYRDALAEAEALLRMGIKEIVLTGVRLGSYR-----GHPRGLAGLVEDLYHLGAKVRL-- 223

Query: 266 TTSHPRDMSDCLIKAHGDL-DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           ++  P D  + L++        + P+LHL +Q+GSDR+L+ M RR+    YR ++ R   
Sbjct: 224 SSIEPEDTGEDLLRVIARYAPGVRPHLHLSLQTGSDRLLRLMGRRYDKAYYRNLVQRAYE 283

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           + P  A+++D I G P ET+++ + T+  ++++   +  +F Y+PR  T  ++M  QV  
Sbjct: 284 LIPGFALTTDVIAGLPTETEEEHQETLTFLEELRPTRVHAFTYTPRPKTRAASMP-QVPP 342

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
            V+  R   +    +          +G  +EVL+E+   + G  +G +P      L+   
Sbjct: 343 EVRKRRTKEIIALAQRLAEERIRPKLGSQVEVLVERI--QGGLALGHTPDYYEARLSGS- 399

Query: 445 HNIGDIIKVRITDVKISTLYGEL 467
              GD +  R+   +  TL G +
Sbjct: 400 ARPGDTVLARVEGAEGYTLLGRV 422


>gi|119719528|ref|YP_920023.1| RNA modification protein [Thermofilum pendens Hrk 5]
 gi|119524648|gb|ABL78020.1| RNA modification enzyme, MiaB family [Thermofilum pendens Hrk 5]
          Length = 428

 Score =  294 bits (754), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 121/448 (27%), Positives = 216/448 (48%), Gaps = 26/448 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R +++++GC +N  +S  M  +   +G++ V S+++AD+++LNTC +R     K++    
Sbjct: 3   RVYIETFGCWLNKGESNIMATLLKRRGHKVVESIENADVVILNTCAVRGDTETKIFRR-- 60

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                +   +++     +VV+GC+     + IL  +P  ++V  P    ++PE++E    
Sbjct: 61  ---LRELEELRQKRGFRLVVSGCLVNVRPKSILDVAPSASLVE-PDAIEKIPEVVESEDK 116

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG-IEIS 204
                      + K  R  + D       G    + I+ GC   C FC+   TRG    S
Sbjct: 117 ------LLIVRQYKASRNVLPDYS----GGAVHVVPIESGCLGSCAFCIEWVTRGTGVKS 166

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
             +  +++  R  +  G  EI L GQ+V A+   G D     +  +   L E+ G  R+R
Sbjct: 167 YPIDVIIENVRAAVSKGAREIFLTGQDVAAY---GYDLGTNLYELVKRILEEVDGEYRVR 223

Query: 265 YTTSHPR---DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
                P         L++   D + L  Y H+P QSG D++L+ M R++T  EY+ I++ 
Sbjct: 224 LGMMEPMLLGRFLKNLLELFRD-ERLYRYFHIPAQSGDDKVLRLMRRKYTVEEYKGIVNT 282

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           IR      +I +D IVGFPGE + +F+ T+  + ++ + +    +Y+ R  T G  M   
Sbjct: 283 IRGSGWKFSIVTDIIVGFPGEGEAEFQNTLKFLREVMFDKVHVARYTFRPFTEGYVMSG- 341

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           V E VK +R     +   E     N + VG+  EV++E      G LVGR+   + VV+ 
Sbjct: 342 VPEPVKKQRSRLASRVALEVAYEINRSYVGEEREVVVEGTSIR-GDLVGRTIEYKPVVIK 400

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELVV 469
            +   +G+I++V+I D    +L G+++ 
Sbjct: 401 DQEARVGEIVRVKIVDATPVSLIGKVLA 428


>gi|313681436|ref|YP_004059174.1| SSU ribosomal protein s12p methylthiotransferase [Sulfuricurvum
           kujiense DSM 16994]
 gi|313154296|gb|ADR32974.1| SSU ribosomal protein S12P methylthiotransferase [Sulfuricurvum
           kujiense DSM 16994]
          Length = 438

 Score =  294 bits (754), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 101/445 (22%), Positives = 191/445 (42%), Gaps = 31/445 (6%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + ++  + S GC  N+ D+  M        +E  ++  +AD+I++NTC   + A ++  +
Sbjct: 1   MSKKLHIVSLGCTKNLVDTEVMLGRLKD--FEMTDASGEADVIIVNTCGFIDAAKQESLN 58

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +  +   +        D ++V+AGC+++   EE+ +    V++  G   Y ++ ELL  
Sbjct: 59  TIFNLDAGRKK------DSVLVMAGCLSERYKEELSKELSEVDIFTGVGDYDKIDELL-- 110

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           A    R     Y ++                    A++ + EGC++ C+FC +P  +G  
Sbjct: 111 AAKQSRFTPEVYLIDGA--------ERVVTGSTYHAYIKLSEGCNQQCSFCAIPSFKGKL 162

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR+L  +  E   L+  G  + + + Q+ +++        +     L+  +  I G+  
Sbjct: 163 NSRNLESIAHEVETLVAKGYYDFSFVSQDSSSYLRD--QNIQDGLIHLIKRIELIDGVKS 220

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
            R    +P   S  LIKA GD  V   Y  +P+Q  +D +LK M R     +  +++  +
Sbjct: 221 ARILYLYPSTTSLKLIKAIGDSKVFHNYFDMPIQHINDEMLKIMKRGFGKAKTLELLGAM 280

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           +++ P+  I + FIVG P ET+  F    +     G+ +   F YS   GT    M E++
Sbjct: 281 KAL-PNAFIRTSFIVGHPQETEAMFEEMAEFSATFGFDRLNVFSYSDEEGTSAYTMEEKI 339

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGR----SPWLQS 437
                  R   L K   + ++S     VG  I ++I+    E    L  R    +P +  
Sbjct: 340 PSKTINARAKKLGKIASDVELSSLQKLVGTEITLVIDGESDEHEFLLSARALNWAPDVDG 399

Query: 438 VVLNSK-----NHNIGDIIKVRITD 457
            +  +          G + + RIT+
Sbjct: 400 EIYVNDREIEGELAFGKMYRARITE 424


>gi|296273084|ref|YP_003655715.1| MiaB-like tRNA modifying protein [Arcobacter nitrofigilis DSM 7299]
 gi|296097258|gb|ADG93208.1| MiaB-like tRNA modifying enzyme [Arcobacter nitrofigilis DSM 7299]
          Length = 421

 Score =  294 bits (754), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 113/434 (26%), Positives = 200/434 (46%), Gaps = 29/434 (6%)

Query: 18  VDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA 77
           ++      + + K++GC+ NV+D+  M        +E       A+++V+N+C +   A 
Sbjct: 1   MNFTNTKPKVYFKTFGCRTNVFDTQVMMSNLKD--FEITQDEKSANVVVINSCTVTNSAD 58

Query: 78  EKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLP 137
                ++  +  L N          VV  GC    +GE +  +   V+ + G      + 
Sbjct: 59  STARGYINSLNKLPNKPR-------VVFTGCGVWTKGETLF-KEDKVDSLFGHSEKENIN 110

Query: 138 ELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197
           ELL+         D ++  E   E                AF+ IQEGCD  C++C++PY
Sbjct: 111 ELLKNEERFFNAGDLEHIDETIVEEFV---------GKSRAFIKIQEGCDFRCSYCIIPY 161

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257
            RG   S S  +++++   L  NG  E  L G NV +  GK    +  + + LL  +S I
Sbjct: 162 VRGDARSYSEDKILEQITTLASNGFGEFILTGTNVGS-YGKK---KHTSLAKLLKKISLI 217

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
           KG+ R+R  +  P  + D   +   D   +  +LH+ +Q  S ++L+ MNRR+   +  +
Sbjct: 218 KGVRRIRMGSIEPIQIDDEFKEII-DEPFMARHLHIALQHTSKKMLEIMNRRNKVLKDLE 276

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
           + + ++      A+ +DFIVG PGETD+ ++  ++ + K       +F YS R GTP + 
Sbjct: 277 LFEFLKDK--GYALGTDFIVGHPGETDELWKEAIENLHKFPLTHVHAFTYSKRDGTPSAT 334

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQS 437
           M EQV  ++   R   L   + E+  +F        +EVLIE+  ++ GK +G   +   
Sbjct: 335 MKEQVKGDISKARYNELVSIIDEKNFNFRKNNK-TTLEVLIEQ--EKNGKYIGLDQYFNQ 391

Query: 438 VVLNSKNHNIGDII 451
           + + S    +GD +
Sbjct: 392 IEIQSNADLVGDWV 405


>gi|154173652|ref|YP_001408590.1| 2-methylthioadenine synthetase [Campylobacter curvus 525.92]
 gi|112803882|gb|EAU01226.1| 2-methylthioadenine synthetase [Campylobacter curvus 525.92]
          Length = 444

 Score =  294 bits (754), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 109/452 (24%), Positives = 196/452 (43%), Gaps = 31/452 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +  + S GC  N+ DS  M     +  YE  N   +AD+I++NTC     A E+    + 
Sbjct: 12  KLHLVSLGCNKNLVDSEIMLGRLSN--YELTNETREADVIIVNTCGFIASAKEESVRVIL 69

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            + + K           +VV GC+ Q   EE++R  P V++  G   Y ++ E+L + + 
Sbjct: 70  EMADAKKQ------GATLVVTGCLMQRYREELMRELPEVDLFTGVGDYDKIDEILLKKQN 123

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                     +      L   +          A++ I EGC++ C+FC +P  +G   SR
Sbjct: 124 ----------LFSPGTYLQSSEDRVITGSNYHAYIKISEGCNQRCSFCAIPNFKGRLKSR 173

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           SL  +V+E + L+  G  + + L Q+ +++      G K    +L+  + +I G+   R 
Sbjct: 174 SLENIVNEVKNLVKKGFYDFSFLSQDSSSYMRD--QGVKDGLIELIDVVEKIDGVKSARI 231

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
              +P   SD LI+      V   Y  +P+Q  S+++L+ M R        Q++  +R+ 
Sbjct: 232 LYLYPSTASDALIERIIASPVFHNYFDMPIQHISEKMLRLMKRGSGKDRIMQLLKMMRAA 291

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P   + +  IVG P E+DDDF     L D+I + +  +F YS    T   +M  QV   
Sbjct: 292 -PGSFLRTGVIVGHPLESDDDFNELCALFDEIKFDRVSAFAYSREEDTAAFDMA-QVPTK 349

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG-----RSPWLQSVVL 440
             ++RL  ++K ++ +  +   A +G+ +   +E    E     G         +   +L
Sbjct: 350 TISKRLSMIEKIIKNEIDASFKAQLGKRVVASLEGQSSEGEMFFGAKMDIWDKDIDGEIL 409

Query: 441 NS----KNHNIGDIIKVRITDVKISTLYGELV 468
            +    +   +G      ITD+    L   ++
Sbjct: 410 INESELEELEVGGRYLCEITDIAPEKLIARVL 441


>gi|56551967|ref|YP_162806.1| MiaB-like tRNA modifying enzyme [Zymomonas mobilis subsp. mobilis
           ZM4]
 gi|56543541|gb|AAV89695.1| MiaB-like tRNA modifying enzyme [Zymomonas mobilis subsp. mobilis
           ZM4]
          Length = 419

 Score =  294 bits (753), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 117/440 (26%), Positives = 206/440 (46%), Gaps = 30/440 (6%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           + + GC++N+ +S  ++           +     DLIV+N+C +  +A  +    + +  
Sbjct: 6   IITLGCRLNIAESEAIKQAL-------TDKEGSQDLIVVNSCAVTSRAVAQTRQAIRKA- 57

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL--ERARFG 146
                  +E  +  +VV GC AQ +  +I    P V+ V+G    ++             
Sbjct: 58  ------SRERPNARIVVTGCAAQIDP-KIFADMPEVSRVIGNVEKHQAESFAFSGNDEEA 110

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           +  V    S+++    L      ++R     AFL IQ GC+  C+FC++P  RG   S S
Sbjct: 111 RIQVTDINSLKETTPHLIAAFSEHSR-----AFLEIQNGCNHHCSFCIIPQGRGRNRSAS 165

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
              ++D ARKLI+NG  E+ L G ++ +  G+ L         + + L ++K L RLR +
Sbjct: 166 FDDILDCARKLINNGHQELVLTGVDLTS-YGQDLTSPSNLGELVAFLLKKLKNLKRLRLS 224

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
           +  P  +   L+    + + +MP++HL +Q+G + ILK M RRH+  +  +++  ++  R
Sbjct: 225 SLDPDGIDPLLMALITEDERIMPHIHLSLQAGDNTILKRMRRRHSREQAIELVASLKKRR 284

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           P+IAI +D I GFP E ++    ++ ++D+        F YSPR GTP + M  QV   +
Sbjct: 285 PEIAIGADIIAGFPTEDEEMAANSLRMIDECDIVFGHIFPYSPRQGTPAAKMP-QVHTPL 343

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHN 446
             ER   L++    +Q  +    VG    VL+E  G       G +P    + L+     
Sbjct: 344 IKERAQKLREAANRRQAEWLKTLVGSRQSVLLEGEGGR-----GHTPQFAPIRLSEAVEA 398

Query: 447 IGDIIKVRITDVKISTLYGE 466
            G I+ + +T      L G+
Sbjct: 399 SG-IVDIMVTGTDKDGLIGK 417


>gi|121613708|ref|YP_001001103.1| putative tRNA modifying protein [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|238065318|sp|A1W162|RIMO_CAMJJ RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|87249647|gb|EAQ72606.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Campylobacter
           jejuni subsp. jejuni 81-176]
          Length = 439

 Score =  294 bits (753), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 110/439 (25%), Positives = 201/439 (45%), Gaps = 30/439 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + ++ S GC  N+ DS  M     +  YE  +    AD+I++NTC   + A ++  + + 
Sbjct: 3   KLYLMSLGCNKNLVDSEIMLGRLSA--YELCDEPSKADVIIVNTCGFIDSAKKESINAIL 60

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +   +        D L+VV GC+ Q   EE+++  P V++  G   Y R+ E++   + 
Sbjct: 61  DLHEQRKK------DSLLVVTGCLMQRYREELMKELPEVDLFTGVGDYERIDEMI--LKK 112

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                ++ Y   +  +R+      +       AF+ I EGC++ C+FC +P  +G   SR
Sbjct: 113 TNLFSNSTYLQSENSKRIITGSNSH-------AFIKIAEGCNQKCSFCAIPSFKGKLKSR 165

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            +S ++ E + L+  G  + + + Q+ +++      GEK     L+  + +IKG+   R 
Sbjct: 166 EISSIIAELKDLVARGYKDFSFIAQDTSSYLFD--KGEKDGLIRLIDEVEKIKGIRAARI 223

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
              +P   S+ LIK     ++ + Y  +P+Q  SD +LK M R   +   +++++ ++S 
Sbjct: 224 LYLYPTSASEALIKRIIASEIFVNYFDMPLQHISDNMLKIMKRGANSTRLKEMLNLMKSA 283

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P+  + + FIVG PGE++ DF    + V   G+ +   F YS    T   +M EQV   
Sbjct: 284 -PNSFLRTGFIVGHPGESEADFEELCEFVKDFGFDRVSVFAYSKEEDTTAFDM-EQVPFK 341

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG----R-SPWLQSVVL 440
           V  +RL  ++K + E      +  VGQ   V+      E    +     R    +   +L
Sbjct: 342 VINKRLKIIEKIVDEVIEKSFEKEVGQKRLVVCTGESSEGEFFIAAKDLRWDREIDGEIL 401

Query: 441 ----NSKNHNIGDIIKVRI 455
                  N  +G I +  I
Sbjct: 402 INESECGNLEMGQIYECEI 420


>gi|328950305|ref|YP_004367640.1| MiaB-like tRNA modifying enzyme [Marinithermus hydrothermalis DSM
           14884]
 gi|328450629|gb|AEB11530.1| MiaB-like tRNA modifying enzyme [Marinithermus hydrothermalis DSM
           14884]
          Length = 436

 Score =  294 bits (753), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 118/442 (26%), Positives = 200/442 (45%), Gaps = 26/442 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R  V++ GC++N  +S  +  M  +     V   + ADL V+NTC +   A       + 
Sbjct: 2   RVAVRTLGCKVNQVESDALVGMLKALEPVVVEPEEGADLFVINTCAVTTTAEATARKEIR 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R R       +   +  +VV GC A+ EGE +       +VVV       LP+++     
Sbjct: 62  RAR-------RANPEAFIVVTGCYAELEGEALKDL--GADVVVPNARKAELPKVILEHFG 112

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
               +  D       E     + G    R V AFL +Q+GC+  C +C++P  RG E  R
Sbjct: 113 ----LPADPVTTPPHEFWGAGERGLLNDR-VRAFLKVQDGCNAGCAYCIIPRLRGRERHR 167

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           + +  + EA  L+  GV EI L G  + ++      G     + L+  L  +   VRL  
Sbjct: 168 AHTDALAEAEALLRTGVQEIVLTGVRLGSYA-----GHPRGLAGLVEDLVALGAKVRL-- 220

Query: 266 TTSHPRDMSDCLIKAHGDL-DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           ++  P D    L++        + P+LHL +Q+G+DR+LK M RR+    YR ++ R   
Sbjct: 221 SSIEPEDTDTALLEVIARHAPQVRPHLHLSLQTGNDRLLKLMGRRYDKAYYRDLVRRAYD 280

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           + P  A+++D I G P ET+ + + T+  ++++   +  +F Y+PR  T  + +  QV  
Sbjct: 281 LIPGFALTTDVIAGLPTETEAEHQETLAFLEELQPVRVHAFTYTPRPKTRAARLP-QVPV 339

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS-K 443
            V+  R   L     E   +     +G  +EVL+E+      + +G +P    VV     
Sbjct: 340 EVRKRRTRELIALAHELAAARIRPKLGTRVEVLVERI--RGDEALGHTPDYYEVVARGRG 397

Query: 444 NHNIGDIIKVRITDVKISTLYG 465
               GD + +R+  ++  TL G
Sbjct: 398 EARPGDTVWMRVDGIREYTLLG 419


>gi|326404964|ref|YP_004285046.1| threonylcarbamoyladenosine tRNA methylthiotransferase [Acidiphilium
           multivorum AIU301]
 gi|325051826|dbj|BAJ82164.1| threonylcarbamoyladenosine tRNA methylthiotransferase [Acidiphilium
           multivorum AIU301]
          Length = 411

 Score =  294 bits (752), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 117/432 (27%), Positives = 191/432 (44%), Gaps = 33/432 (7%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           + ++GC++N ++S  M     + G          D +++NTC +  +A  +    + R  
Sbjct: 5   ILTFGCRLNAFESEVMRGHAEAAGL--------GDAVIVNTCAVTAEAERQARQAIRRAH 56

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
                  +      ++V GC AQ +          V  V+G        +L   A   + 
Sbjct: 57  -------RADPGAKIIVTGCAAQIDPAA-WSSIEGVARVLGNAE-----KLTPEAWRSEA 103

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
            V     ++ +     +++G   R R   AF+ +Q+GCD  CTFC++PY RG   S  L 
Sbjct: 104 PVLVADIMQLRQTAAHLIEGFGTRAR---AFIEVQQGCDHRCTFCIIPYGRGPSRSIPLG 160

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
            VV++ R L+ NG  E+ L G ++ +  G  L G           L+ +  L RLR ++ 
Sbjct: 161 AVVEQVRTLVANGYNEVVLTGVDLTS-YGADLPGAPKLGQLCRRLLAAVPDLPRLRLSSI 219

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
            P ++ D L +       LMP+LHL VQ+GSD ILK M RRH  +   +   R R++RPD
Sbjct: 220 DPAEIDDDLWRLLESEPRLMPHLHLSVQAGSDLILKRMKRRHLRHHVIEAAVRARALRPD 279

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           IA+ +D I GFP ET+  F  T+ LVD  G      F +S R GTP + +   +    + 
Sbjct: 280 IALGADLIAGFPTETEAHFAETLALVDDAGLDYLHVFPFSARKGTPAARIP-ALPMAERR 338

Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIG 448
            R   L++    +  +   A  G  +  L E       +  G +     +  ++     G
Sbjct: 339 ARAARLREAGARRAEARFRAMTGTTVTALAE------TETAGHTETFAPIRFSAP-VTPG 391

Query: 449 DIIKVRITDVKI 460
            ++  RIT    
Sbjct: 392 ALVTARITGADA 403


>gi|260752486|ref|YP_003225379.1| MiaB-like tRNA modifying enzyme [Zymomonas mobilis subsp. mobilis
           NCIMB 11163]
 gi|258551849|gb|ACV74795.1| MiaB-like tRNA modifying enzyme [Zymomonas mobilis subsp. mobilis
           NCIMB 11163]
          Length = 419

 Score =  294 bits (752), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 117/440 (26%), Positives = 206/440 (46%), Gaps = 30/440 (6%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           + + GC++N+ +S  ++           +     DLIV+N+C +  +A  +    + +  
Sbjct: 6   IITLGCRLNIAESEAIKQAL-------TDKDGSQDLIVVNSCAVTSRAVAQTRQAIRKA- 57

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL--ERARFG 146
                  +E  +  +VV GC AQ +  +I    P V+ V+G    ++             
Sbjct: 58  ------SRERPNARIVVTGCAAQIDP-KIFADMPEVSRVIGNVEKHQAESFAFSGNDEEA 110

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           +  V    S+++    L      ++R     AFL IQ GC+  C+FC++P  RG   S S
Sbjct: 111 RIQVTDINSLKETTPHLIAAFSEHSR-----AFLEIQNGCNHHCSFCIIPQGRGRNRSAS 165

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
              ++D ARKLI+NG  E+ L G ++ +  G+ L         + + L ++K L RLR +
Sbjct: 166 FDDILDCARKLINNGHQELVLTGVDLTS-YGQDLTSPSNLGELVAFLLKKLKNLKRLRLS 224

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
           +  P  +   L+    + + +MP++HL +Q+G + ILK M RRH+  +  +++  ++  R
Sbjct: 225 SLDPDGIDPLLMALITEDERIMPHIHLSLQAGDNTILKRMRRRHSREQAIELVASLKKRR 284

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           P+IAI +D I GFP E ++    ++ ++D+        F YSPR GTP + M  QV   +
Sbjct: 285 PEIAIGADIIAGFPTEDEEMAANSLRMIDECDIVFGHIFPYSPRQGTPAAKMP-QVHTPL 343

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHN 446
             ER   L++    +Q  +    VG    VL+E  G       G +P    + L+     
Sbjct: 344 IKERAQKLREAANRRQAEWLKTLVGSRQSVLLEGEGGR-----GHTPQFAPIRLSEAVEA 398

Query: 447 IGDIIKVRITDVKISTLYGE 466
            G I+ + +T      L G+
Sbjct: 399 SG-IVDIMVTGTDKDGLIGK 417


>gi|66475406|ref|XP_627519.1| 2-methylthioadenine synthetase; MiaB [Cryptosporidium parvum Iowa
           II]
 gi|32398737|emb|CAD98697.1| conserved hypothetical transmembrane protein [Cryptosporidium
           parvum]
 gi|46228975|gb|EAK89824.1| 2-methylthioadenine synthetase; MiaB [Cryptosporidium parvum Iowa
           II]
          Length = 543

 Score =  294 bits (752), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 117/487 (24%), Positives = 215/487 (44%), Gaps = 44/487 (9%)

Query: 2   GLFIKLIGVAHMVSQIVDQCIVP--QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSM 59
           GL I+ +   ++     ++  VP   +  VK++GC  N  DS  M  +    GY  V  +
Sbjct: 80  GLIIRAVNNLNIQ---PEEGFVPGVAKIMVKNFGCNHNRSDSESMMGLLSEYGYTLVEEL 136

Query: 60  DDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILR 119
           D+ +LIV+N+C ++  + +   + +   ++ +           VVV GCV QA   +I  
Sbjct: 137 DECNLIVINSCTVKGPSQDSCQNLIELAKSKRK---------FVVVTGCVPQA---DINL 184

Query: 120 RSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDK--------FERLSIVDGGYN 171
                  ++G +  +R+ E++E    G  V+     +E K           L  +     
Sbjct: 185 NFLKDVSIIGVRNIHRIVEVVELTLQGNIVLLIPDKMEGKSGQLIDSLEISLPPLSLPKI 244

Query: 172 RKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQN 231
           R+      +TI  GC   CT+C   ++RG   S  +  ++    + ++ GV +  L  ++
Sbjct: 245 RRNPFVEIITISVGCLGNCTYCKTKHSRGDLGSYPVETIIQRINQSLNEGVKQFWLTSED 304

Query: 232 VNAWRGKGLDGEKCTFSDLLYSLSEI---KGLVRLRYT-TSHPRDMSDCLIKAHGDLDVL 287
           + A  GK +       S+LL  + +I     ++R+  T   +  D  D +I        +
Sbjct: 305 IGA-YGKDI---GTNLSELLREILKILPQDIMIRIGMTNPPYILDQIDEIIDIM-KHPNV 359

Query: 288 MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDF 347
             +LH+PVQSGS+RIL  M R +   E+  ++D I    P   I++D I GFPGE+D D 
Sbjct: 360 FEFLHIPVQSGSNRILDLMKRDYVIEEFSLLVDSILKEIPLATIATDIICGFPGESDQDH 419

Query: 348 RATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFND 407
             +++L++K  +      K+ PR GTP + M   V   V   R   +      Q  + N+
Sbjct: 420 FQSVELINKYKFPVINISKFYPRPGTPAAKMKP-VPNGVSKSRSSEITNTF--QSFNHNE 476

Query: 408 ACV------GQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKIS 461
             +       ++++V   +H +     VG +     V++N  N+ +G    V++      
Sbjct: 477 -YIFENLPDDKVVKVWFIEHSERSNHTVGHTKNYNKVLVNMDNNLLGKCAMVKLIKPYKW 535

Query: 462 TLYGELV 468
            + G ++
Sbjct: 536 HIEGIVI 542


>gi|315638362|ref|ZP_07893541.1| Fe-S oxidoreductase [Campylobacter upsaliensis JV21]
 gi|315481573|gb|EFU72198.1| Fe-S oxidoreductase [Campylobacter upsaliensis JV21]
          Length = 436

 Score =  294 bits (752), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 107/451 (23%), Positives = 203/451 (45%), Gaps = 30/451 (6%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
            ++ S GC  N+ DS  M     +  Y   +    AD++++NTC   E A ++    +  
Sbjct: 4   LYLHSLGCNKNLVDSEIMLGRLEN--YTLCDEPKRADVLIVNTCGFIESAKKESIEAILN 61

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           +   +        + L+VV GC+ Q   EE++R  P V++  G   + ++  L+ + +  
Sbjct: 62  LHKERKK------NSLLVVTGCLMQRYKEELMRALPEVDLFTGVGDFEKIDTLILKKQ-- 113

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
               ++ Y  E+  +R+      +       AF+ I EGC++ C FC +P+ +G   SR+
Sbjct: 114 NLFSNSTYLQEEGIKRVITGSNSH-------AFIKISEGCNQSCAFCAIPHFKGRLKSRT 166

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
           +S ++ E   LI  G  + + + Q+ +++      G+K     L+  + ++KG+   R  
Sbjct: 167 ISSIIKELESLIAKGYKDFSFIAQDSSSYLFD--QGQKDGLLRLIEEVEKLKGIRAARIL 224

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
             +P  +S+ +++      V + Y  +P+Q  SD++LK M R     +  +++  +R  +
Sbjct: 225 YLYPSTLSEEVVRKIIASKVFVNYFDMPLQHISDKMLKVMKRGSKKEQILKLLKMMRGAK 284

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
            D  + + FIVG PGE+++DFR   + V+   + +   F YS    T    M EQV + +
Sbjct: 285 -DSFLRTGFIVGHPGESEEDFRELCEFVEGFDFDRISVFGYSKEEDTLAFEM-EQVPKKI 342

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG----R-SPWLQS-VVL 440
              RL  L+K + +         VGQ   V+ E    E    +     R    +   +++
Sbjct: 343 INARLKILEKIVAKSLEKSFKKEVGQKRLVVCEGESSEGEFFIAGKDLRWDREIDGEILI 402

Query: 441 NSKNHNI---GDIIKVRITDVKISTLYGELV 468
           N     I   G I +  IT      L  + +
Sbjct: 403 NESECGILERGQIYECEITQALDVKLIAKAL 433


>gi|313672441|ref|YP_004050552.1| SSU ribosomal protein s12p methylthiotransferase [Calditerrivibrio
           nitroreducens DSM 19672]
 gi|312939197|gb|ADR18389.1| SSU ribosomal protein S12P methylthiotransferase [Calditerrivibrio
           nitroreducens DSM 19672]
          Length = 433

 Score =  294 bits (752), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 116/451 (25%), Positives = 206/451 (45%), Gaps = 28/451 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R    S GC  N  D   +       G+E V  +  AD IV+NTC   + A  +    + 
Sbjct: 2   RVAFISLGCPKNQTDLEYLIGDLVVDGFEVVTDIKKADAIVVNTCGFLKSAVSEAVENIL 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +   K  + K      ++V+GC+ +   +EI +  P V+   G  T   + E L++ + 
Sbjct: 62  DVAYNKKKKAK------LIVSGCMVERYKDEIAKELPEVDFWTGVGTLKEIAEYLKKGKL 115

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            ++V +  +  E++                  A+L I EGC+  C++C +P+ RG  ISR
Sbjct: 116 TRKVEEKSFYGENRILVNH----------SYYAYLKISEGCNNRCSYCTIPFIRGNLISR 165

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
               ++ EA  L+ NGV E+ ++ Q+   +   G+D  +    +LL  L  + G  ++R 
Sbjct: 166 PRESIIKEAEDLVKNGVKELIIISQDTTKY---GIDKGRSELIELLTDLVMVDGEFKIRL 222

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
              +P  +S+ L+    + D ++ Y  +PVQ   D ILK MNR+  + + + + + IRS 
Sbjct: 223 LYLNPDGVSNELVDFVSNQDKMIKYFEIPVQHIDDEILKKMNRKSDSRKIKSVFEYIRSR 282

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P+  I + FIVGFPGE D  F   ++ V++     A  F YS   GT   N        
Sbjct: 283 IPEAFIRTTFIVGFPGEDDVSFEKMVEFVEEYKPDFAGFFPYSREEGTKAYNFEGSCKSR 342

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GRSPWLQSVVLNSKN 444
             ++R+  +QK  ++  +          I + +E+  +E   L+ GR+   Q+  ++ K 
Sbjct: 343 EISKRISRIQKIQKKNTLERLKRLKKDTITLYVEQPSEENPFLLEGRA-EFQAPEIDGKA 401

Query: 445 HNIGDI-------IKVRITDVKISTLYGELV 468
           + +G +        K +I  V    +Y E++
Sbjct: 402 YILGGVADKGYGPYKAKIKRVIYPDIYCEIL 432


>gi|241761947|ref|ZP_04760032.1| MiaB-like tRNA modifying enzyme [Zymomonas mobilis subsp. mobilis
           ATCC 10988]
 gi|241373627|gb|EER63199.1| MiaB-like tRNA modifying enzyme [Zymomonas mobilis subsp. mobilis
           ATCC 10988]
          Length = 419

 Score =  294 bits (752), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 117/440 (26%), Positives = 206/440 (46%), Gaps = 30/440 (6%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           + + GC++N+ +S  ++           +     DLIV+N+C +  +A  +    + +  
Sbjct: 6   IITLGCRLNIAESEAIKQAL-------TDKDGSQDLIVVNSCAVTSRAVAQTRQAIRKA- 57

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL--ERARFG 146
                  +E  +  +VV GC AQ +  +I    P V+ V+G    ++             
Sbjct: 58  ------SRERPNARIVVTGCAAQIDP-KIFADMPEVSRVIGNVEKHQAESFAFSGSDEEA 110

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           +  V    S+++    L      ++R     AFL IQ GC+  C+FC++P  RG   S S
Sbjct: 111 RIQVTDINSLKETTPHLIAAFSEHSR-----AFLEIQNGCNHHCSFCIIPQGRGRNRSAS 165

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
              ++D ARKLI+NG  E+ L G ++ +  G+ L         + + L ++K L RLR +
Sbjct: 166 FDDILDCARKLINNGHQELVLTGVDLTS-YGQDLTSPSNLGELVAFLLKKLKNLKRLRLS 224

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
           +  P  +   L+    + + +MP++HL +Q+G + ILK M RRH+  +  +++  ++  R
Sbjct: 225 SLDPDGIDPLLMALITEDERIMPHIHLSLQAGDNTILKRMRRRHSREQAIELVASLKKRR 284

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           P+IAI +D I GFP E ++    ++ ++D+        F YSPR GTP + M  QV   +
Sbjct: 285 PEIAIGADIIAGFPTEDEEMAANSLRMIDECDIVFGHIFPYSPRQGTPAAKMP-QVHTPL 343

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHN 446
             ER   L++    +Q  +    VG    VL+E  G       G +P    + L+     
Sbjct: 344 IKERAQKLREAANRRQAEWLKTLVGSRQSVLLEGEGGR-----GHTPQFAPIRLSEAVEA 398

Query: 447 IGDIIKVRITDVKISTLYGE 466
            G I+ + +T      L G+
Sbjct: 399 SG-IVDIMVTGTDKDGLIGK 417


>gi|284926662|gb|ADC29014.1| putative radical SAM domain family protein [Campylobacter jejuni
           subsp. jejuni IA3902]
          Length = 439

 Score =  294 bits (752), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 110/439 (25%), Positives = 202/439 (46%), Gaps = 30/439 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + ++ S GC  N+ DS  M     +  YE  +    AD++++NTC   + A ++  + + 
Sbjct: 3   KLYLMSLGCNKNLVDSEIMLGHLSA--YELCDEPSKADVLIVNTCGFIDSAKKESINAIL 60

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +   +        D L+VV GC+ Q   EE+++  P V++  G   Y R+ E++   + 
Sbjct: 61  DLHEQRKK------DSLLVVTGCLMQRYREELMKELPEVDLFTGVGDYERIDEMI--LKK 112

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                ++ Y   + F+R+      +       AF+ I EGC++ C+FC +P  +G   SR
Sbjct: 113 TNLFSNSTYLQSENFKRIITGSNSH-------AFIKIAEGCNQKCSFCAIPSFKGKLKSR 165

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            +S ++ E + L+  G  + + + Q+ +++      GEK     L+  + +IKG+   R 
Sbjct: 166 EISSIIAELKDLVARGYKDFSFIAQDTSSYLFD--KGEKDGLIRLIGEVEKIKGIRAARI 223

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
              +P   S+ LIK     ++ + Y  +P+Q  SD +LK M R   +   +++++ ++S 
Sbjct: 224 LYLYPTSASEALIKRIIASEIFVNYFDMPLQHISDNMLKIMKRGANSTRLKEMLNLMKSA 283

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P+  + + FIVG PGE++ DF    + V   G+ +   F YS    T   +M EQV   
Sbjct: 284 -PNSFLRTGFIVGHPGESEADFEELCEFVKDFGFDRVSVFAYSKEEDTAAFDM-EQVSFK 341

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG----R-SPWLQSVVL 440
           V  +RL  ++K + E      +  VGQ   V+      E    +     R    +   +L
Sbjct: 342 VINKRLKIIEKIVNEVIEKSFEKEVGQKRLVVCTGESSEGEFFIAAKDLRWDREIDGEIL 401

Query: 441 ----NSKNHNIGDIIKVRI 455
                  N  +G I +  I
Sbjct: 402 INESECGNLEMGQIYECEI 420


>gi|85714448|ref|ZP_01045436.1| 2-methylthioadenine synthetase [Nitrobacter sp. Nb-311A]
 gi|85698895|gb|EAQ36764.1| 2-methylthioadenine synthetase [Nitrobacter sp. Nb-311A]
          Length = 422

 Score =  294 bits (752), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 120/446 (26%), Positives = 195/446 (43%), Gaps = 43/446 (9%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
             V ++GC++N ++S  +     + G +        +++++N+C +  +A  +    + R
Sbjct: 3   VDVVTFGCRLNAFESEVIRRNAEAAGLD--------EIVIINSCAVTNEAVAQTRQSIRR 54

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLP--------- 137
           +R       +E     +VV GC AQ E   +  +   V+ V+G     R           
Sbjct: 55  LR-------RERPSARIVVTGCAAQIEPA-MFAQMAEVDRVIGNDDKMRGDAWRAARAAF 106

Query: 138 ---ELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCV 194
              ++   A     V D     E     +    GG  R     AF+ +Q GCD  CTFC+
Sbjct: 107 AGSDVAIPAEKKIAVTDIMAVTEMAPHLVDGFRGGLPR-----AFVQVQNGCDHRCTFCI 161

Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL 254
           +P+ RG   S  ++ +VD+ R L++ G  E+ L G ++ +  G  L G       +   L
Sbjct: 162 IPFGRGNSRSAPMNVIVDQVRALVEAGHVEVVLTGVDLTS-YGADLPGRPRLGGLVKQIL 220

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
             +  + RLR ++    +    L+ A  + + LMP+LHL +QSG D ILK M RRH+  E
Sbjct: 221 QRVPEMTRLRISSIDSIEADRDLLDAVANEERLMPHLHLSLQSGDDIILKRMKRRHSRRE 280

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
             +   ++R +RPD+A+ +D I GFP ETDD F  ++DLV +        F YS R GTP
Sbjct: 281 AIEFCAQVRRLRPDVALGADIIAGFPTETDDMFARSLDLVAECDLTFLHVFPYSLRPGTP 340

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPW 434
            + M   V   V  +R   L+              VG    VLIE        + GR+  
Sbjct: 341 AARMPP-VAAEVIRDRAGQLRAAAGAALRRRLAGEVGATRRVLIE------NVIQGRTEH 393

Query: 435 LQSVVLNSKNHNIGDIIKVRITDVKI 460
              V +       G +  + +T    
Sbjct: 394 FLPVAIAGD--MPGTVRTITVTGHDG 417


>gi|57238477|ref|YP_179608.1| putative tRNA modifying protein [Campylobacter jejuni RM1221]
 gi|81557413|sp|Q5HSX7|RIMO_CAMJR RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|57167281|gb|AAW36060.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Campylobacter
           jejuni RM1221]
 gi|315058909|gb|ADT73238.1| Ribosomal protein S12p Asp88 methylthiotransferase [Campylobacter
           jejuni subsp. jejuni S3]
          Length = 439

 Score =  293 bits (751), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 110/439 (25%), Positives = 201/439 (45%), Gaps = 30/439 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + ++ S GC  N+ DS  M     +  YE  +    AD+I++NTC   + A ++  + + 
Sbjct: 3   KLYLMSLGCNKNLVDSEIMLGRLSA--YELCDEPSKADVIIVNTCGFIDSAKKESINAIL 60

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +   +        D L+VV GC+ Q   EE+++  P V++  G   Y R+ E++   + 
Sbjct: 61  DLHEQRKK------DSLLVVTGCLMQRYREELMKELPEVDLFTGVGDYERVDEMI--LKK 112

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                ++ Y   +  +R+      +       AF+ I EGC++ C+FC +P  +G   SR
Sbjct: 113 TNLFSNSTYLQSENSKRIITGSNSH-------AFIKIAEGCNQKCSFCAIPSFKGKLKSR 165

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            +S ++ E + L+  G  + + + Q+ +++      GEK     L+  + +IKG+   R 
Sbjct: 166 EISSIIAELKDLVARGYKDFSFIAQDTSSYLFD--KGEKDGLIRLIDEVEKIKGIRAARI 223

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
              +P   S+ LIK     ++ + Y  +P+Q  SD +LK M R   +   +++++ ++S 
Sbjct: 224 LYLYPTSASEALIKRIIASEIFVNYFDMPLQHISDNMLKIMKRGANSTRLKEMLNLMKSA 283

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P+  + + FIVG PGE++ DF    + V   G+ +   F YS    T   +M EQV   
Sbjct: 284 -PNSFLRTGFIVGHPGESEADFEELCEFVKDFGFDRVSVFAYSKEEDTAAFDM-EQVSFK 341

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG----R-SPWLQSVVL 440
           V  +RL  ++K + E      +  VGQ   V+      E    +     R    +   +L
Sbjct: 342 VINKRLKIIEKIVNEVIEKSFEKEVGQKRLVVCTGESSEGEFFIAAKDLRWDREIDGEIL 401

Query: 441 ----NSKNHNIGDIIKVRI 455
                  N  +G I +  I
Sbjct: 402 INESECGNLEMGQIYECEI 420


>gi|294012737|ref|YP_003546197.1| MiaB-like enzyme [Sphingobium japonicum UT26S]
 gi|292676067|dbj|BAI97585.1| MiaB-like enzyme [Sphingobium japonicum UT26S]
          Length = 442

 Score =  293 bits (751), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 124/460 (26%), Positives = 200/460 (43%), Gaps = 48/460 (10%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           + + GC++N+ +S  + +M   +           DLIV+N+C +  +A  +    +    
Sbjct: 6   IITLGCRLNIAESEAIREMAGGRD----------DLIVVNSCAVTAEAVRQTRQAI---- 51

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL-LERARFGK 147
                  ++  D  ++V GC AQ E E     +  V+ V+G +           + R G 
Sbjct: 52  ---RRARRDRPDARIMVTGCAAQTEPETFAAMA-EVDAVIGNREKMDASHYTSSQRRLGS 107

Query: 148 RVVDTDY-----------SVEDKFERLSIVDGGYNRK----------RGVTAFLTIQEGC 186
           + +                     ER+ + D    R+              AFL +Q GC
Sbjct: 108 QAIGHGVGPGIPAFAGMTDEMGTAERVKVSDIMSVRETAPHMASAFAEHARAFLEVQNGC 167

Query: 187 DKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT 246
           D  CTFC++PY RG   S     V+D+AR+L+D G  EI L G +V +  G  L G    
Sbjct: 168 DHRCTFCIIPYGRGNSRSVPAGAVIDKARELVDAGYREIVLTGVDVTS-YGPDLPGAPSL 226

Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306
              +   L  +  L RLR ++    ++ + L         +MP+LHL +Q+G D ILK M
Sbjct: 227 GLLIERLLKGVPDLPRLRLSSLDSVEIDERLFDLIAHEPRMMPHLHLSLQAGDDMILKRM 286

Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
            RRH   +  +I++R+++ RP I+I +D I GFP E +  F  ++ LV++        F 
Sbjct: 287 KRRHGRADAVRIVERLKAARPGISIGADIIAGFPTEDEAMFENSLRLVEECAIVHGHIFP 346

Query: 367 YSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG 426
           YSPR GTP + M  QVD      R   L+     Q+  +  + +G    VL+E++G    
Sbjct: 347 YSPRAGTPAARMP-QVDRAAVKARAARLRSACEAQREGWLRSLIGSTQSVLVERNG---- 401

Query: 427 KLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGE 466
            L G +     V           II   IT ++   L  +
Sbjct: 402 -LSGHAENFAPVRF-GAPQTPSSIIHATITGLENGALIAQ 439


>gi|67623743|ref|XP_668154.1| transmembrane protein [Cryptosporidium hominis TU502]
 gi|54659343|gb|EAL37924.1| transmembrane protein [Cryptosporidium hominis]
          Length = 543

 Score =  293 bits (751), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 117/487 (24%), Positives = 215/487 (44%), Gaps = 44/487 (9%)

Query: 2   GLFIKLIGVAHMVSQIVDQCIVP--QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSM 59
           GL I+ +   ++ S+   +  VP   +  VK++GC  N  DS  M  +    GY  V  +
Sbjct: 80  GLIIRAVNNLNIQSE---EGFVPGIAKIMVKNFGCNHNRSDSESMMGLLSEYGYTLVEEL 136

Query: 60  DDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILR 119
           D+ +LIV+N+C ++  + +   + +   ++ +           VVV GCV QA   +I  
Sbjct: 137 DECNLIVINSCTVKGPSQDSCQNLIELAKSKRK---------FVVVTGCVPQA---DINL 184

Query: 120 RSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDK--------FERLSIVDGGYN 171
                  ++G +  +R+ E++E    G  V+     +E K           L  +     
Sbjct: 185 NFLKDVSIIGVRNIHRIVEVVELTLQGNIVLLIPDKMEGKSGQLIDSLEMSLPPLSLPKI 244

Query: 172 RKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQN 231
           R+      +TI  GC   CT+C    +RG   S  +  ++    + ++ GV +  L  ++
Sbjct: 245 RRNPFVEIITISVGCLGNCTYCKTKQSRGDLGSYPIETIIQRINQSLNEGVKQFWLTSED 304

Query: 232 VNAWRGKGLDGEKCTFSDLLYSLSEI---KGLVRLRYT-TSHPRDMSDCLIKAHGDLDVL 287
           + A  GK +       S+LL  + +I     ++R+  T   +  D  D +I        +
Sbjct: 305 IGA-YGKDI---GTNLSELLREILKILPQDIMIRIGMTNPPYILDQIDEIIDIM-KHPNV 359

Query: 288 MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDF 347
             +LH+PVQSGS+RIL  M R +   E+  ++D I    P   I++D I GFPGE+D D 
Sbjct: 360 FEFLHIPVQSGSNRILDLMKRDYVIEEFSLLVDSILKEIPLATIATDIICGFPGESDQDH 419

Query: 348 RATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFND 407
             +++L++K  +      K+ PR GTP + M   V   V   R   +      Q  + N+
Sbjct: 420 FQSVELINKYKFPVINISKFYPRPGTPAAKMKP-VPNGVSKGRSSEITNIF--QSFNHNE 476

Query: 408 ACV------GQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKIS 461
             +       ++++V   +H +     VG +     V++N  ++ +G    V++      
Sbjct: 477 -YIFENLPDDKVVKVWFIEHSERSNHTVGHTKNYNKVLVNMDSNLLGKCAMVKLIKPYKW 535

Query: 462 TLYGELV 468
            + G ++
Sbjct: 536 HIEGIVI 542


>gi|307748320|gb|ADN91590.1| Ribosomal protein S12 methylthiotransferase rimO [Campylobacter
           jejuni subsp. jejuni M1]
 gi|315930962|gb|EFV09937.1| RNA modification enzyme, MiaB family protein [Campylobacter jejuni
           subsp. jejuni 327]
          Length = 439

 Score =  293 bits (750), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 110/439 (25%), Positives = 200/439 (45%), Gaps = 30/439 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + ++ S GC  N+ DS  M     +  YE  +    AD++++NTC   + A ++  + + 
Sbjct: 3   KLYLMSLGCNKNLVDSEIMLGRLSA--YELCDEPSKADVLIVNTCGFIDSAKKESINAIL 60

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +   +        D L+VV GC+ Q   EE+++  P V++  G   Y R+ E++   + 
Sbjct: 61  DLHEQRKK------DSLLVVTGCLMQRYREELMKELPEVDLFTGVGDYERIDEMI--LKK 112

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                ++ Y   +  +R+      +       AF+ I EGC++ C+FC +P  +G   SR
Sbjct: 113 TNLFSNSTYLQSENSKRIITGSNSH-------AFIKIAEGCNQKCSFCAIPSFKGKLKSR 165

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            +S +V E + L+  G  + + + Q+ +++      GEK     L+  + +IKG+   R 
Sbjct: 166 EISSIVAELKDLVARGYKDFSFIAQDTSSYLFD--KGEKDGLIRLIDEVEKIKGIRAARI 223

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
              +P   S+ LIK     ++ + Y  +P+Q  SD +LK M R       +++++ ++S 
Sbjct: 224 LYLYPTSASEALIKRIIASEIFVNYFDMPLQHISDNMLKIMKRGANNTRLKEMLNLMKSA 283

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P+  + + FIVG PGE++ DF    + V   G+ +   F YS    T   +M EQV   
Sbjct: 284 -PNSFLRTGFIVGHPGESEADFEELCEFVKDFGFDRISVFAYSKEEDTAAFDM-EQVPFK 341

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG----R-SPWLQSVVL 440
           V  +RL  ++K + E      +  VGQ   V+      E    +     R    +   +L
Sbjct: 342 VINKRLKIIEKIVDEVIEKSFEKEVGQKRLVVCTGESSEGEFFIAAKDLRWDREIDGEIL 401

Query: 441 ----NSKNHNIGDIIKVRI 455
                  N  +G I +  I
Sbjct: 402 INESECGNLEMGQIYECEI 420


>gi|303232268|ref|ZP_07318967.1| MiaB-like protein [Atopobium vaginae PB189-T1-4]
 gi|302481678|gb|EFL44739.1| MiaB-like protein [Atopobium vaginae PB189-T1-4]
          Length = 449

 Score =  293 bits (750), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 112/410 (27%), Positives = 178/410 (43%), Gaps = 23/410 (5%)

Query: 11  AHMVSQIVD-QCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNT 69
           A  +S   D Q   P +    + GC++N  ++  +       G E V   + AD I++NT
Sbjct: 17  AEAISTPDDTQSARPPKVAFINLGCRVNRVETDVIASELERAGCEVVPQTE-ADAIIINT 75

Query: 70  CHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG 129
           C +  +A  K    + R   L            VV  GCVA    +EI   +  VNV V 
Sbjct: 76  CAVTSEAEAKTRKVVRRAAKL-------AHTPFVVATGCVASLHADEISSIAENVNVQVN 128

Query: 130 PQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKF 189
                          FG      D S       L        R R     + +Q+GC+  
Sbjct: 129 KAQVASCV----LNEFGCIAGSVDDS-----GNLISTPTPTGRTRP---GIKVQDGCNNR 176

Query: 190 CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSD 249
           C+FC+V   RG   S  + +++ + R    +G  E+ L G N+         G +     
Sbjct: 177 CSFCIVWKARGPACSADVDEIISQVRATQAHGAHEVVLTGINLG-DYRYEYKGSRLRLPG 235

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLD-VLMPYLHLPVQSGSDRILKSMNR 308
           LL  + +   + R+R ++  P D++D L+      +  +  +LH+ +QSG D  L+ M R
Sbjct: 236 LLSEIMKQTSIERIRLSSIEPPDITDELLDVIAGSEGRIAQFLHICLQSGCDATLRRMKR 295

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
            +T   YR  ++R R   P +A+ +D IVGFPGETDD+F  +      IG+A+   F+YS
Sbjct: 296 NYTTAFYRSAVERARDRMPHVALGTDLIVGFPGETDDEFATSYKFCKDIGFAKMHIFRYS 355

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI 418
            R GTP +    QVD +V A R   + +   + + +     VG    V++
Sbjct: 356 KRSGTPAATAEGQVDPHVMAARSRTMHELAAQMRYTQAQKLVGMRDSVVV 405


>gi|294102421|ref|YP_003554279.1| MiaB-like tRNA modifying enzyme [Aminobacterium colombiense DSM
           12261]
 gi|293617401|gb|ADE57555.1| MiaB-like tRNA modifying enzyme [Aminobacterium colombiense DSM
           12261]
          Length = 434

 Score =  293 bits (750), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 120/453 (26%), Positives = 212/453 (46%), Gaps = 24/453 (5%)

Query: 18  VDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA 77
           +   +  ++  + + GC+ N  ++  +  M    G E V +    D  VL TC +   A 
Sbjct: 1   MKGALQGKKINIMAMGCRSNQSEADSLASMLKRTGAEIVKAP-PYDAAVLITCTVTAIAD 59

Query: 78  EKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLP 137
           +K    L           ++  + L+V  GC AQ     + +R   V+++VG +  +++P
Sbjct: 60  KKSRQLL-------RRLRRQSPEALLVATGCWAQKADPNLAQRL-GVDLLVGNRQKWQIP 111

Query: 138 ELLERARFGKRVVDTDYSVEDKFERLSIVDGG-YNRKRGVTAFLTIQEGCDKFCTFCVVP 196
            LL  A   KR +       D            +       AF+ IQ+GC+ FC++CV+P
Sbjct: 112 SLLNHALGEKRPLPLTIVRNDILHSEEWDHLFQFQPLLHSRAFVKIQDGCNHFCSYCVIP 171

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256
           + RG  +SR L+ V++E R + D+G  E+ L G ++    G+  +    +  +L+     
Sbjct: 172 FVRGEPVSRPLNSVLEEVRSIADSGCTEVVLTGVHLG-LYGQFGE---VSLGELVRQAGA 227

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           I G+ R+R+ +  P  ++D L+ A  +     P+LHLP+QSG D +L+ M R ++  EY 
Sbjct: 228 IPGVERIRFGSLEPFGINDELLSALAETPQFCPHLHLPLQSGDDTVLQRMRRGYSPLEYM 287

Query: 317 QIIDRIRSVRPD-IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
             ++R R      I IS+D +VGFPGE +  F  T+  + ++ + +   F YS R GT  
Sbjct: 288 ASVERARHYLGSRIHISTDVLVGFPGEDERAFANTLSFMKEVAFGKVHVFPYSSREGTRA 347

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWL 435
           ++  + +  +V  ER+  + +   +    +    VG+ I V IE   +      G +P+ 
Sbjct: 348 ASFDDHLPRHVVQERVHKVMEMGEQLFREYCSQWVGEEISVFIEDAAETGS--TGLTPFF 405

Query: 436 QSVVLNSKNHNIGDIIKVRITDVKIST---LYG 465
              V+  +  + G IIK   T  +      LYG
Sbjct: 406 VKAVVP-QMVSPGRIIK---TLTRSYDSEQLYG 434


>gi|315637089|ref|ZP_07892312.1| 2-methylthioadenine synthetase [Arcobacter butzleri JV22]
 gi|315478625|gb|EFU69335.1| 2-methylthioadenine synthetase [Arcobacter butzleri JV22]
          Length = 422

 Score =  293 bits (750), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 105/426 (24%), Positives = 199/426 (46%), Gaps = 29/426 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + + K++GC+ NV+D+  M        +E     ++A+++V+N+C +   A     +++ 
Sbjct: 9   KVYFKTFGCRTNVFDTQVMMSNLKD--FEVTLDENEANIVVINSCTVTNSADSTARTYIN 66

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            ++ L  +         V+  GC    +GE + + +  V+ + G      + +LL     
Sbjct: 67  SLKKLPKNPR-------VIFTGCGVWTKGETLFKEN-KVDSLFGHSQKENINDLLLNEER 118

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                D  +  +   E                AF+ IQEGCD  C++C++PY RG   S 
Sbjct: 119 FFEAGDLTHIDKTIVEEFV---------GKSRAFIKIQEGCDFRCSYCIIPYVRGDARSY 169

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           S  +++++   L  NG  E  L G NV +  GK    +  + + LL  +S IKG+ R+R 
Sbjct: 170 SEDKILEQVTTLAANGFGEFILTGTNVGS-YGKK---QHTSLAKLLKKMSLIKGVRRIRM 225

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
            +  P  + D   +   +   +  +LH+ +Q  S  +LK MNRR+      ++ + +R  
Sbjct: 226 GSIEPIQIDDEFKEII-NEPFMAKHLHIALQHTSKEMLKIMNRRNKVLSDLELFEFLREN 284

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
               A+ +DFIVG PGET+  ++  M+ + +       +F YS R GTP + M  Q+  +
Sbjct: 285 --GYALGTDFIVGHPGETEALWKEAMENLHRFPLTHVHAFTYSKRDGTPSATMKPQIKGD 342

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445
           +   R   L   + ++  +F      + +EVL+E+  ++ GK +G   +   + ++S   
Sbjct: 343 IAKVRYNELINIIEQKNYNFRKENK-KTLEVLVEQ--EKNGKYIGLDQFFNQIEIDSTAD 399

Query: 446 NIGDII 451
            +GD +
Sbjct: 400 LVGDWV 405


>gi|315187099|gb|EFU20856.1| MiaB-like tRNA modifying enzyme [Spirochaeta thermophila DSM 6578]
          Length = 445

 Score =  293 bits (749), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 129/445 (28%), Positives = 202/445 (45%), Gaps = 24/445 (5%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           +       + GC++N Y++  +   F   G+         DL ++NTC +  K+ +K   
Sbjct: 1   MKPVVIFYTLGCKLNQYETEGIAAAFREAGFRIGEFPQSGDLYIVNTCTVTSKSEQKARR 60

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTY---YRLPEL 139
            + +I        +E  + LVVV GC  Q E +E+   S  V  +   +     +    L
Sbjct: 61  IIRKIA-------REHPEALVVVTGCYPQLERDEVQALSDRVIALPLEEKPLLLHLPSRL 113

Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGV----TAFLTIQEGCDKFCTFCVV 195
            +      RV      +  +F           R         +FL IQ+GCD+ CT+C V
Sbjct: 114 PDEDLDPSRVERLLQEIRTQFPLDRTAGRFLYRVDRPAFHARSFLKIQDGCDRRCTYCRV 173

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
           P  RG  +S   ++++   ++L   GV EI L G N+  +R + LD        L +   
Sbjct: 174 PLARGRAVSDDPARILQRVQELEGRGVSEIVLTGVNLAQYRWESLDLGGLLLRLLSH--- 230

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
                +R R ++  P   S+ L  A      + P+ HLPVQSGS+R+L+ M R +TA E 
Sbjct: 231 --TSRLRFRISSLEPEGFSEALWDAL-SSPRICPHFHLPVQSGSNRVLRKMGRWYTAEEI 287

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
             +I R+R V  D  IS DFIVGFPGET +DF AT   +D+  ++ A  F+YSPR GT  
Sbjct: 288 SALIARLRDVSTDPFISGDFIVGFPGETREDFEATRAFLDENAFSGAHLFRYSPRPGTAA 347

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK--LVGRSP 433
                 V E V  ER   L   +     ++     G+++EV+ E+   + G+   VG S 
Sbjct: 348 YASKAHVPERVAKEREEALHACVEVHASAYLARQKGRVVEVIPEQERVKAGQRYAVGTSE 407

Query: 434 WLQSVVLNSKNHNIGDIIKVRITDV 458
               V +       G+ ++V + DV
Sbjct: 408 NYLLVWVPVP--LEGETVRVEVGDV 430


>gi|157737373|ref|YP_001490056.1| MiaB-like tRNA modifying enzyme [Arcobacter butzleri RM4018]
 gi|114461634|gb|ABI75082.1| MiaB-like tRNA modifying enzyme [Arcobacter butzleri]
 gi|157699227|gb|ABV67387.1| MiaB-like tRNA modifying enzyme [Arcobacter butzleri RM4018]
          Length = 422

 Score =  293 bits (749), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 106/427 (24%), Positives = 200/427 (46%), Gaps = 29/427 (6%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           Q+ + K++GC+ NV+D+  M        +E     ++A+++V+N+C +   A     +++
Sbjct: 8   QKVYFKTFGCRTNVFDTQVMMSNLKD--FEVTLDENEANIVVINSCTVTNSADSTARTYI 65

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             ++ L  +         V+  GC    +GE + + +  V+ + G      + +LL    
Sbjct: 66  NSLKKLPQNPR-------VIFTGCGVWTKGETLFKEN-KVDSLFGHSQKENINDLLLNEE 117

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
                 D  +  +   E                AF+ IQEGCD  C++C++PY RG   S
Sbjct: 118 RFFEAGDLTHIDKTIVEEFV---------GKSRAFIKIQEGCDFRCSYCIIPYVRGDARS 168

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
            S  +++++   L  NG  E  L G NV +  GK    +  + + LL  +S IKG+ R+R
Sbjct: 169 YSEDKILEQVTTLASNGFGEFILTGTNVGS-YGKK---QHTSLAKLLKKMSLIKGVRRIR 224

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
             +  P  + D   +   +   +  +LH+ +Q  S  +LK MNRR+      ++ + +R 
Sbjct: 225 MGSIEPIQIDDEFKEII-NEPFMAKHLHIALQHTSKEMLKIMNRRNKVLSDLELFEFLRE 283

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
                A+ +DFIVG PGET+  ++  M+ + +       +F YS R GTP + M  Q+  
Sbjct: 284 N--GYALGTDFIVGHPGETEALWKEAMENLHRFPLTHVHAFTYSKRDGTPSATMKPQIKG 341

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
           ++   R   L   + ++  +F      + +EVL+E+  ++ GK +G   +   + ++S  
Sbjct: 342 DIAKVRYNELINIIEQKNYNFRKENK-KTLEVLVEQ--EKNGKYIGLDQFFNQIEIDSTA 398

Query: 445 HNIGDII 451
             +GD +
Sbjct: 399 DLVGDWV 405


>gi|296081133|emb|CBI18159.3| unnamed protein product [Vitis vinifera]
          Length = 549

 Score =  293 bits (749), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 118/429 (27%), Positives = 203/429 (47%), Gaps = 28/429 (6%)

Query: 44  MEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLV 103
           M     + GY   ++ ++ADL ++NTC ++  +   + + + + R+ K           +
Sbjct: 1   MAGQLAAFGYVLSDNPEEADLWLINTCTVKSPSQSAMDTLITKGRSSKKP---------L 51

Query: 104 VVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERL 163
           VVAGCV Q   +  L+    V++V G Q   R+ E++E    G  V   +         L
Sbjct: 52  VVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLNRKT------L 102

Query: 164 SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVC 223
             +D    RK      L I  GC   CT+C   + RG   S ++  +V   R +I +GV 
Sbjct: 103 PALDLPKVRKNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVDSLVGRVRTVIADGVK 162

Query: 224 EITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK--GLVRLRYTTSHPRDMSDCL--IK 279
           EI L  ++  A+   G D        L   +SE+   G   LR   ++P  + + L  + 
Sbjct: 163 EIWLSSEDTGAY---GRDIGVTLPILLNAIVSELPPDGGTMLRIGMTNPPYILEHLKEMA 219

Query: 280 AHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGF 339
                  +  +LH+PVQSGSD IL +MNR +T  E+R ++D +  + P + I++D I GF
Sbjct: 220 VVLRHPCVYSFLHVPVQSGSDAILSAMNREYTVTEFRTVVDTLTELVPGMQIATDIICGF 279

Query: 340 PGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLR 399
           PGETD++F  T+ L+ +  + Q    ++ PR GTP + M ++V   V  +R   L     
Sbjct: 280 PGETDEEFAQTVSLIQEYRFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRELTSIF- 337

Query: 400 EQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVK 459
            +  +  +   G++  + I +   +   LVG +     V++ +    +G    V+IT V 
Sbjct: 338 -EAFTPYNGMEGRVERIWISEIATDGIHLVGHTKGYMQVLVVAPRSLMGTSAIVKITSVG 396

Query: 460 ISTLYGELV 468
             +++GEL+
Sbjct: 397 RWSVFGELI 405


>gi|157415679|ref|YP_001482935.1| MiaB-like tRNA modifying protein [Campylobacter jejuni subsp.
           jejuni 81116]
 gi|238065317|sp|A8FNC1|RIMO_CAMJ8 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|157386643|gb|ABV52958.1| hypothetical protein C8J_1360 [Campylobacter jejuni subsp. jejuni
           81116]
          Length = 439

 Score =  293 bits (749), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 109/439 (24%), Positives = 201/439 (45%), Gaps = 30/439 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + ++ S GC  N+ DS  M     +  YE  +    AD++++NTC   + A ++  + + 
Sbjct: 3   KLYLMSLGCNKNLVDSEIMLGRLSA--YELCDEPSKADVLIVNTCGFIDSAKKESINAIL 60

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +   +        D L+VV GC+ Q   EE+++  P V++  G   Y R+ E++   + 
Sbjct: 61  DLHEQRKK------DSLLVVTGCLMQRYREELMKELPEVDLFTGVGDYERIDEMI--LKK 112

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                ++ Y   +  +R+      +       AF+ I EGC++ C+FC +P  +G   SR
Sbjct: 113 TNLFSNSTYLQSENSKRIITGSNSH-------AFIKIAEGCNQKCSFCAIPSFKGKLKSR 165

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            +S ++ E + L+  G  + + + Q+ +++      GEK     L+  + +IKG+   R 
Sbjct: 166 EISSIIAELKDLVARGYKDFSFIAQDTSSYLFD--KGEKDGLIRLIDEVEKIKGIRAARI 223

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
              +P   S+ LIK     ++ + Y  +P+Q  SD +LK M R   +   +++++ ++S 
Sbjct: 224 LYLYPTSASEALIKRIIASEIFINYFDMPLQHISDNMLKIMKRGANSTRLKEMLNLMKSA 283

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P+  + + FIVG PGE++ DF    + V   G+ +   F YS    T   +M EQV   
Sbjct: 284 -PNSFLRTGFIVGHPGESEADFEELCEFVKDFGFDRISVFAYSKEEDTAAFDM-EQVPFK 341

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG----R-SPWLQSVVL 440
           V  +RL  ++K + E      +  VGQ   V+      E    +     R    +   +L
Sbjct: 342 VINKRLKIIEKIVDEVIEKSFEKEVGQKRLVVCTGKSSEGEFFIAAKDLRWDREIDGEIL 401

Query: 441 ----NSKNHNIGDIIKVRI 455
                  N  +G I +  I
Sbjct: 402 INESECGNLEMGQIYECEI 420


>gi|86151990|ref|ZP_01070203.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Campylobacter
           jejuni subsp. jejuni 260.94]
 gi|85841098|gb|EAQ58347.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Campylobacter
           jejuni subsp. jejuni 260.94]
          Length = 439

 Score =  293 bits (749), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 109/439 (24%), Positives = 201/439 (45%), Gaps = 30/439 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + ++ S GC  N+ DS  M     +  YE  +    AD++++NTC   + A ++  + + 
Sbjct: 3   KLYLMSLGCNKNLVDSEIMLGRLSA--YELCDEPSKADVLIVNTCGFIDSAKKESINAIL 60

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +   +        D L+VV GC+ Q   EE+++  P V++  G   Y R+ E++   + 
Sbjct: 61  DLHEQRKK------DSLLVVTGCLMQRYREELMKELPEVDLFTGVGDYERIDEMI--LKK 112

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                ++ Y   +  +R+      +       AF+ I EGC++ C+FC +P  +G   SR
Sbjct: 113 TNLFSNSTYLQSENSKRIITGSNSH-------AFIKIAEGCNQKCSFCAIPSFKGKLKSR 165

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            +S ++ E + L+  G  + + + Q+ +++      GEK     L+  + +IKG+   R 
Sbjct: 166 EISSIIAELKDLVARGYKDFSFIAQDTSSYLFD--KGEKDGLIRLIDEVEKIKGIRAARI 223

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
              +P   S+ LIK     ++ + Y  +P+Q  SD +LK M R   +   +++++ ++S 
Sbjct: 224 LYLYPTSASEALIKRIIASEIFVNYFDMPLQHISDNMLKIMKRGANSTRLKEMLNLMKST 283

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P+  + + FIVG PGE++ DF    + V   G+ +   F YS    T   +M EQV   
Sbjct: 284 -PNSFLRTGFIVGHPGESEADFEELCEFVKDFGFDRVSVFAYSKEEDTAAFDM-EQVPFK 341

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG----R-SPWLQSVVL 440
           V  +RL  ++K + E      +  VGQ   V+      E    +     R    +   +L
Sbjct: 342 VINKRLKIIEKIVDEVIEKSFEKEVGQKRLVVCTGESSEGEFFIAAKDLRWDREIDGEIL 401

Query: 441 ----NSKNHNIGDIIKVRI 455
                  N  +G I +  I
Sbjct: 402 INESECGNLEMGQIYECEI 420


>gi|205356112|ref|ZP_03222879.1| hypothetical protein Cj8421_1497 [Campylobacter jejuni subsp.
           jejuni CG8421]
 gi|205345955|gb|EDZ32591.1| hypothetical protein Cj8421_1497 [Campylobacter jejuni subsp.
           jejuni CG8421]
          Length = 439

 Score =  292 bits (748), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 109/439 (24%), Positives = 201/439 (45%), Gaps = 30/439 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + ++ S GC  N+ DS  M     +  YE  +    AD++++NTC   + A ++  + + 
Sbjct: 3   KLYLMSLGCNKNLVDSEIMLGRLSA--YELCDEPSKADVLIVNTCGFIDSAKKESINAIL 60

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +   +        D L+VV GC+ Q   EE+++  P V++  G   Y R+ E++   + 
Sbjct: 61  DLHEQRKK------DSLLVVTGCLMQRYREELMKELPEVDLFTGVGDYERVDEMI--LKK 112

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                ++ Y   +  +R+      +       AF+ I EGC++ C+FC +P  +G   SR
Sbjct: 113 TNLFSNSTYLQSENSKRIITGSNSH-------AFIKIAEGCNQKCSFCAIPSFKGKLKSR 165

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            +S ++ E + L+  G  + + + Q+ +++      GEK     L+  + +IKG+   R 
Sbjct: 166 EISSIIAELKDLVARGYKDFSFIAQDTSSYLFD--KGEKDGLIRLIDEVEKIKGIRAARI 223

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
              +P   S+ LIK     ++ + Y  +P+Q  SD +LK M R   +   +++++ ++S 
Sbjct: 224 LYLYPTSASEALIKRIIASEIFVNYFDMPLQHISDNMLKIMKRGANSTRLKEMLNLMKSA 283

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P+  + + FIVG PGE++ DF    + V   G+ +   F YS    T   +M EQV   
Sbjct: 284 -PNSFLRTGFIVGHPGESEADFEELCEFVKDFGFDRVSVFAYSKEEDTAAFDM-EQVSFK 341

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG----R-SPWLQSVVL 440
           V  +RL  ++K + E      +  VGQ   V+      E    +     R    +   +L
Sbjct: 342 VINKRLKIIEKIVNEVIEKSFEKEVGQKRLVVCTGESSEGEFFIAAKDLRWDREIDGEIL 401

Query: 441 ----NSKNHNIGDIIKVRI 455
                  N  +G I +  I
Sbjct: 402 INESECGNLEMGQIYECEI 420


>gi|58039893|ref|YP_191857.1| putative oxidoreductase [Gluconobacter oxydans 621H]
 gi|58002307|gb|AAW61201.1| Putative oxidoreductase [Gluconobacter oxydans 621H]
          Length = 400

 Score =  292 bits (748), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 120/446 (26%), Positives = 183/446 (41%), Gaps = 59/446 (13%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V ++GC++N ++S  M      Q           D I++NTC +   A  +    + R  
Sbjct: 5   VLTFGCRLNAHESDGMAHHARGQD----------DTIIVNTCAVTTTAERQARQAIRRAH 54

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
                  +E  D  +VV GC +    +       +V VV  P      P +      G  
Sbjct: 55  -------RENPDAKIVVTGCASDIAPDRWAGLPGVVRVV--PNEDKLKPAIWGDTSAG-- 103

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
                                    R   A L +Q+GCD  CTFC++PY RG   S  + 
Sbjct: 104 ---------------------LPPSRHARALLQVQQGCDHRCTFCIIPYGRGDSRSTPVE 142

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
             +  A  L++ G  EI L G ++ +W+G G  G      +LL     + G+ RLR ++ 
Sbjct: 143 DAIARAEALVEAGHQEIVLTGVDIASWQGSGGKGLGALCRELLRR---VDGVRRLRLSSI 199

Query: 269 HPRDMSD-----CLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
            P  +        L     +   LMP+LHL +Q+GSD ILK M RRH        + R+R
Sbjct: 200 DPVLLDAQTGDADLWWLLENEPRLMPHLHLSLQAGSDLILKRMKRRHDTAGVAATLRRVR 259

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           S+RP+  + +D I GFP ET+  F  T   +++        F YS R GTP + M   V 
Sbjct: 260 SIRPETGVGADLIAGFPTETNALFEETRAFIEEQQIPFLHVFPYSERPGTPAARMP-AVP 318

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
              + +R  CL+      +  F    +G   ++L E   +      G SP   +V L   
Sbjct: 319 NAERQKRAACLRDIGEANRDRFLQRLIGTEFDILAETPDR------GHSPEFAAVRLTGT 372

Query: 444 NHNI--GDIIKVRITDVKISTLYGEL 467
                 G  + VR T ++  TL  E+
Sbjct: 373 APAPVRGSFVPVRATGLENGTLLAEI 398


>gi|57168992|ref|ZP_00368121.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Campylobacter coli
           RM2228]
 gi|57019658|gb|EAL56347.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Campylobacter coli
           RM2228]
          Length = 439

 Score =  292 bits (748), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 108/439 (24%), Positives = 200/439 (45%), Gaps = 30/439 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + ++ S GC  N+ DS  M     +  YE  +    AD++++NTC   + A ++  + + 
Sbjct: 3   KLYLMSLGCNKNLVDSEIMLGRLSA--YELCDEPSKADVLIVNTCGFIDSAKKESINAIL 60

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +   +        D L+VV GC+ Q   EE+++  P V++  G   Y R+ E++   + 
Sbjct: 61  DLHEQRKK------DSLLVVTGCLMQRYREELMKELPEVDLFTGVGDYERIDEMI--LKK 112

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                ++ Y   +  +R+      +       AF+ I EGC++ C+FC +P  +G   SR
Sbjct: 113 TNLFSNSTYLQGENSKRIITGSNSH-------AFIKIAEGCNQKCSFCAIPSFKGKLKSR 165

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            +S ++ E + L+  G  + + + Q+ +++      GEK     L+  + +I+G+   R 
Sbjct: 166 EISSIIAELKDLVARGYKDFSFIAQDTSSYLFD--KGEKDGLIRLIDEVEKIEGIKAARI 223

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
              +P   S+ LIK      + + Y  +P+Q  SD +LK M R   +   +++++ ++S 
Sbjct: 224 LYLYPTSASEALIKRIIASKIFVNYFDMPLQHISDNMLKIMKRGANSTRLKEMLNLMKSA 283

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            PD  + + FIVG PGE+D DF    + +   G+ +   F YS    T   +M EQV   
Sbjct: 284 -PDSFLRTGFIVGHPGESDADFGELCEFIKDFGFDRVSVFAYSKEEDTAAFDM-EQVPFK 341

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG----R-SPWLQSVVL 440
           V  +RL  ++K + E      +  VG+   V+      E    +     R    +   +L
Sbjct: 342 VINKRLKIIEKIVDEVIEKSFEKEVGKKRLVVCTGESSEGEFFIAAKDLRWDREIDGEIL 401

Query: 441 ----NSKNHNIGDIIKVRI 455
                  N  +G I +  I
Sbjct: 402 INESECGNLEMGQIYECEI 420


>gi|302335758|ref|YP_003800965.1| RNA modification enzyme, MiaB family [Olsenella uli DSM 7084]
 gi|301319598|gb|ADK68085.1| RNA modification enzyme, MiaB family [Olsenella uli DSM 7084]
          Length = 422

 Score =  292 bits (748), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 120/445 (26%), Positives = 195/445 (43%), Gaps = 31/445 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R    + GC++N  +   +       G   V   ++AD +V+NTC +  +A  K    + 
Sbjct: 5   RVAFVNLGCRVNRVEVDLIAQELARAGCVIVK-PEEADAVVVNTCAVTAEAEAKTRKVVR 63

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R  +L       G   +VV  GCVA    +E+   +P V V             +     
Sbjct: 64  RAASL-------GQVPVVVATGCVASLFSDELASIAPNVTV-------EADKSRVSETVL 109

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G+  +      +D     +    G  R       + +Q+GCD  CT+C+V   RG   S 
Sbjct: 110 GELGLPAGSVGDDGELVATPTPTGRARP-----GIKVQDGCDNRCTYCIVWKARGAARSM 164

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
              +VV   R  +  G  E+ L G N+ ++RG    G +     LL  +     + R+R 
Sbjct: 165 GSGEVVSAVRDALSRGAREVVLTGINLGSFRGTCAGGGRIALPGLLELVLRETTVERVRL 224

Query: 266 TTSHPRDMSDCLIKAHGDLD-VLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           ++  P D+   L+         + P+LH+ +QSG D  L+ M R +    YR  I R R 
Sbjct: 225 SSIEPPDVDGELLSVMAANPARIAPFLHVCLQSGCDATLRRMGRVYDTALYRTAIARARE 284

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           + P IA+  D IVGFPGETDDDF  ++    ++ +A+   F+YS R GTP ++  +QV  
Sbjct: 285 MVPGIAVGCDLIVGFPGETDDDFERSLAFCAEMDFAKMHVFRYSRRPGTPAASAPDQVGP 344

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
           +V A R   ++      +       VGQ   V++++ G+      G +  L  V L++  
Sbjct: 345 DVMAARSSRMRALADRMRHDQAARRVGQEELVVVQRPGR------GVTGGLFDVRLDAS- 397

Query: 445 HNIGDIIKVRITDVKISTLYGELVV 469
             +  +++VRI  V      G LV 
Sbjct: 398 VPVDALVRVRIGAVMED---GTLVA 419


>gi|78188544|ref|YP_378882.1| hypothetical protein Cag_0566 [Chlorobium chlorochromatii CaD3]
 gi|78170743|gb|ABB27839.1| Protein of unknown function UPF0004 [Chlorobium chlorochromatii
           CaD3]
          Length = 470

 Score =  292 bits (748), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 105/430 (24%), Positives = 198/430 (46%), Gaps = 26/430 (6%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD-DADLIVLNTCHIREKAAEKVY 81
           + QR    + GC++N  +S  +    + +G+E V+  D   DLI++++C +  +A +K  
Sbjct: 5   IKQRVAALTLGCKLNYAESSALLSALWQKGWEVVSLHDGKVDLIIIHSCAVTAQAEQKGR 64

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYY---RLPE 138
             +  +        +      ++V GC AQ   + +      V+ V+G    +       
Sbjct: 65  QKIRALH-------RNYPTSRIMVIGCAAQLHPD-VFAAIEGVDGVLGSNDKFELSHYER 116

Query: 139 LLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
           ++ +      V  T             +     ++    AFL IQ+GC+  C +CV+P+ 
Sbjct: 117 VMAKKCNKPLVCITPMEHCKTIHHGFSLPATLAKQERTRAFLKIQDGCNAGCAYCVIPHL 176

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258
           RG   S   +Q+V++A +L  +G  EI L G N+  +   G+D        LL +L+E+ 
Sbjct: 177 RGASRSLPANQLVEQAHRLAASGYREIVLTGVNIGDYWADGVD-----LCGLLRALAEVP 231

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
            + RLR +++    +SD LI+       ++P+LH+P+Q GSD +L++M RR+T   YR  
Sbjct: 232 -VSRLRLSSTELEALSDELIELVAASPTIVPHLHVPLQGGSDSLLRAMRRRYTTAMYRAR 290

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT----- 373
           I+R      + AI  D +VG+P ET++ F  +M  ++ +  +    F  S R  T     
Sbjct: 291 IERAVERIANCAIGVDIMVGYPSETEEMFHESMAFIEALPLSYLHVFSCSLRPHTLLADE 350

Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK---HGKEKGKLVG 430
                 + +  ++ AER   +     +++ +F    +G ++ VL+E+            G
Sbjct: 351 VARQERKALSGDIVAERSRQMVALGHQKEAAFKQRFLGAVMPVLLEQAKTIAPHVTAWSG 410

Query: 431 RSPWLQSVVL 440
            +P    V++
Sbjct: 411 HTPNYLHVLV 420


>gi|316969966|gb|EFV53984.1| putative radical SAM domain protein [Trichinella spiralis]
          Length = 405

 Score =  292 bits (748), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 116/400 (29%), Positives = 187/400 (46%), Gaps = 62/400 (15%)

Query: 107 GCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIV 166
           GC+A+           +V+++ GP  Y  LP L+     G++ V+T +S ++ +  +  V
Sbjct: 16  GCMAKRSAHPSGSEVGLVDLIAGPDAYRDLPRLIASCETGQQAVNTIFSYDETYADIHPV 75

Query: 167 DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEIT 226
                  R  ++  +I  GC   C++CVVP+TRG E SR               GV E+T
Sbjct: 76  -------RRDSSSQSIMRGCSNMCSYCVVPFTRGFEKSRP--------------GVKEVT 114

Query: 227 LLGQNVNAWRGKG-----LDGEKCT----------------FSDLLYSLSEIKGLVRLRY 265
           LLGQNVN++         +DG+                   F++LL  LS I   VR+R+
Sbjct: 115 LLGQNVNSYCDADPSSTIVDGQLYLASGFVNVVKRKKCGIRFAELLQRLSNINSNVRIRF 174

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
           T+ HP+D  D ++    +   +   +HLP QSGS+ +L+ M+R +T   Y  ++++I+  
Sbjct: 175 TSPHPKDFPDEVLDVIRNHPNICNSVHLPAQSGSNNVLQRMHRGYTVEAYMNLVEKIKDK 234

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML-EQVDE 384
            P + ++SDFI GF GETD+D   T+ L+  + Y+  ++F YS R  T       + V  
Sbjct: 235 IPGVTLTSDFISGFCGETDEDHEQTVQLIKNVQYSYCYTFVYSMRERTKAHRRYCDDVPI 294

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVLNSK 443
           +VK  R   LQ + R+  +  N   +G+ + VL+EK  K   +  +GRS     ++    
Sbjct: 295 DVKKARSQQLQNEFRKGALILNRKFIGKTLTVLVEKESKRSTEFWMGRSDGNLKIIFPKS 354

Query: 444 ------------------NHNIGDIIKVRITDVKISTLYG 465
                             N  IGD + V I D     L G
Sbjct: 355 SVVNCFDSSSSSSSIHQRNIQIGDFVDVDINDASSEVLKG 394


>gi|289523492|ref|ZP_06440346.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
 gi|289503184|gb|EFD24348.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
          Length = 463

 Score =  292 bits (748), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 126/419 (30%), Positives = 221/419 (52%), Gaps = 27/419 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R  +K+ GC+ N+Y++  + D F  +G      +   D+ +L +C + + A +K   FL 
Sbjct: 11  RVKIKTLGCRTNIYEAEAIADSFRREGAVISEDL--FDVGILVSCAVTKTAEKKCRQFLR 68

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           +++       +E  D L+V+ GC  QA  EE L      ++ VG +    LP ++ +   
Sbjct: 69  QLK-------RESPDALIVLCGCYVQALTEEELASL-GADLYVGNRLKSDLPGIVAKMLN 120

Query: 146 GKR----VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
                   +  D    DK++ L +    ++ +    +F+ +Q+GC++FC++C+VP+ RG 
Sbjct: 121 DPIERPLFLKKDVLSNDKWDALELSRVTFHTR----SFVKVQDGCNRFCSYCIVPFLRGR 176

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVN-AWRGKGLDGEKCTFSDLLYSLSEIKGL 260
             SRS+ +V +E ++L+D+G  E+ L G ++     G   D       DL+ +LS I+GL
Sbjct: 177 PTSRSVKEVAEEVKRLVDHGCKEVVLTGIHLGLYGYGCDFD-----LGDLINALSRIEGL 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            RLR+ +  P  +SD LI    + D+   +LH+P+QSG DRIL  M R + A ++  II 
Sbjct: 232 RRLRFGSIEPHALSDRLIDVLAESDIFCRHLHVPLQSGDDRILSLMQRGYRAEDFINIIR 291

Query: 321 RIRSVR-PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
           +IR     D+ IS+D IVGFPGE +D F+ T++LVD +G  +   F +SPR GT   +M 
Sbjct: 292 KIRRKLGDDVHISTDIIVGFPGEDEDAFQNTLNLVDALGIGRVHVFPFSPRSGTKAYDMP 351

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSV 438
            +++      R++   ++ R     +    + + +++L+E +  EK  + G S     V
Sbjct: 352 GRLEGQTIKSRVVRATERGRLSLQRYAQRWLNRKVDILVEHNDGEK--VKGLSRHFLEV 408


>gi|86149347|ref|ZP_01067578.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Campylobacter
           jejuni subsp. jejuni CF93-6]
 gi|88596431|ref|ZP_01099668.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Campylobacter
           jejuni subsp. jejuni 84-25]
 gi|218563057|ref|YP_002344836.1| putative radical SAM domain family protein [Campylobacter jejuni
           subsp. jejuni NCTC 11168]
 gi|123336653|sp|Q0P8G1|RIMO_CAMJE RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|85840129|gb|EAQ57387.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Campylobacter
           jejuni subsp. jejuni CF93-6]
 gi|88191272|gb|EAQ95244.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Campylobacter
           jejuni subsp. jejuni 84-25]
 gi|112360763|emb|CAL35562.1| putative radical SAM domain family protein [Campylobacter jejuni
           subsp. jejuni NCTC 11168]
 gi|315930834|gb|EFV09826.1| RNA modification enzyme, MiaB family protein [Campylobacter jejuni
           subsp. jejuni 305]
          Length = 439

 Score =  292 bits (748), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 109/439 (24%), Positives = 201/439 (45%), Gaps = 30/439 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + ++ S GC  N+ DS  M     +  YE  +    AD++++NTC   + A ++  + + 
Sbjct: 3   KLYLMSLGCNKNLVDSEIMLGHLSA--YELCDEPSKADVLIVNTCGFIDSAKKESINAIL 60

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +   +        D L+VV GC+ Q   EE+++  P V++  G   Y R+ E++   + 
Sbjct: 61  DLHEQRKK------DSLLVVTGCLMQRYREELMKELPEVDLFTGVGDYERIDEMI--LKK 112

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                ++ Y   +  +R+      +       AF+ I EGC++ C+FC +P  +G   SR
Sbjct: 113 TNLFSNSTYLQSENSKRIITGSNSH-------AFIKIAEGCNQKCSFCAIPSFKGKLKSR 165

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            +S ++ E + L+  G  + + + Q+ +++      GEK     L+  + +IKG+   R 
Sbjct: 166 EISSIIAELKDLVARGYKDFSFIAQDTSSYLFD--KGEKDGLIRLIDEVEKIKGIRAARI 223

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
              +P   S+ LIK     ++ + Y  +P+Q  SD +LK M R   +   +++++ ++S 
Sbjct: 224 LYLYPTSASEALIKRIIASEIFINYFDMPLQHISDNMLKIMKRGANSTRLKEMLNLMKSA 283

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P+  + + FIVG PGE++ DF    + V   G+ +   F YS    T   +M EQV   
Sbjct: 284 -PNSFLRTGFIVGHPGESEADFEELCEFVKDFGFDRISVFAYSKEEDTAAFDM-EQVPFK 341

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG----R-SPWLQSVVL 440
           V  +RL  ++K + E      +  VGQ   V+      E    +     R    +   +L
Sbjct: 342 VINKRLKIIEKIVDEVIEKSFEKEVGQKRLVVCTGKSSEGEFFIAAKDLRWDREIDGEIL 401

Query: 441 ----NSKNHNIGDIIKVRI 455
                  N  +G I +  I
Sbjct: 402 INESECGNLEMGQIYECEI 420


>gi|126459773|ref|YP_001056051.1| RNA modification protein [Pyrobaculum calidifontis JCM 11548]
 gi|126249494|gb|ABO08585.1| RNA modification enzyme, MiaB family [Pyrobaculum calidifontis JCM
           11548]
          Length = 440

 Score =  292 bits (748), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 124/453 (27%), Positives = 203/453 (44%), Gaps = 50/453 (11%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + +V+++GC +   D+  +       G   V   +DAD+I++ TC +RE    +  + + 
Sbjct: 3   KAYVEAFGCWLAKADAEVIRQRL---GLVPVARPEDADVILVYTCAVREDGEVRQLARIR 59

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +  L             +VAGC+A+     +   +P   ++         P  +E  R 
Sbjct: 60  ELAGLGREM---------IVAGCLARLRPHTVKSLAPHAELI--------YPSQVEGGRE 102

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI---E 202
            +  V                      + G+   + +Q GC   CTFC   YTRG     
Sbjct: 103 REMRVLP------------------RFEGGLVYVVPLQVGCLGNCTFCATKYTRGGAGYV 144

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKGLV 261
            S    +V+   +K ++ G  EI L GQ+V  +          T  DLL  L  E+ G  
Sbjct: 145 KSADPDEVIRHVKKAVEGGAREIYLTGQDVITYGFDARWRSGWTLPDLLERLLREVDGEY 204

Query: 262 RLRYTTSHPRDMSD---CLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           R+R   S P         ++        +  Y HLPVQSGSDR+LK+M RR+T  EY+++
Sbjct: 205 RVRIGMSEPWVFERFADQILDIVKRDRRVYRYFHLPVQSGSDRVLKAMGRRYTVDEYKEL 264

Query: 319 IDRIRSVRPD-IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
           I +IR V  + + I++D IVGFPGE  +DF AT+ LV+++ + +    ++SPR  T  + 
Sbjct: 265 IRKIRRVLGEPVFIATDIIVGFPGEEWEDFLATVKLVEELQFDKVHVARFSPRPFTEAAV 324

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQS 437
           M  QV +  K  R   L +         N A VG    VLI +   + G +VGR+   + 
Sbjct: 325 MPRQVPDAEKKRRSKILSEVALRVAHLRNGARVGSRDVVLITEV--DHGLVVGRAGDYRQ 382

Query: 438 VVLN--SKNHNIGDIIKVRITDVKISTLYGELV 468
           VV+     +  +G  ++V +       LYG+++
Sbjct: 383 VVVKRGPGDGLLGQFVEVVVAGAGPVYLYGDVI 415


>gi|320101289|ref|YP_004176881.1| MiaB family RNA modification protein [Desulfurococcus mucosus DSM
           2162]
 gi|319753641|gb|ADV65399.1| RNA modification enzyme, MiaB family [Desulfurococcus mucosus DSM
           2162]
          Length = 428

 Score =  292 bits (748), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 118/448 (26%), Positives = 215/448 (47%), Gaps = 28/448 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + ++++YGC +N  D   M +    +G+  VN   DAD I++NTC +R      +   + 
Sbjct: 2   KVYIETYGCALNRSDEALMRESITGKGHVLVNDPGDADAIIINTCTVRLDTEYHMVKRIR 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +  L     K      ++VAGC+A+A+   + R +P  ++ + PQ   R+ E+LE    
Sbjct: 62  ELYKLSMEAGK-----KLIVAGCMARAQPYTVSRIAPGASL-LSPQNSPRVVEVLEA--P 113

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G+ V+       D+                  A + +QEGC   C+FC+  + R + +S 
Sbjct: 114 GRVVMINGVRARDRIGVYV---------ENRVAPIPVQEGCLSNCSFCISRHARRVLVSH 164

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           S+  VV    K + +G  E+ L G ++    G  L   +     +   +  ++G   LR 
Sbjct: 165 SIDAVVKAVGKAVRDGAVEVQLTGMDLGT-YGMDLYRARRLPDLIRRIVENVRGNYMLRV 223

Query: 266 TTS---HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
                 H R + + L+K   D + +  +LH+P+QSGS+R+LK M R +T  EY +++DR+
Sbjct: 224 GMINPEHLRHILEDLVKVVADAENVYKFLHIPLQSGSNRVLKLMRRNYTVEEYLEMVDRV 283

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           +S  P+++I++D IVG P E+++DF  T+ ++++ G+ +     YS R  T  + M +Q+
Sbjct: 284 KSSIPEVSIATDIIVGHPMESEEDFAETLRVIEEAGFERVHLAGYSMRPLTCSAAM-QQL 342

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
             +V+ ER+L   + + +  +      VG  +   I +H    G  V R      VV+  
Sbjct: 343 PTSVRKERVLKALRVVEKVGMRVRARYVGTSVRCFITEH---TGTWVCRLTNYIPVVIRG 399

Query: 443 K---NHNIGDIIKVRITDVKISTLYGEL 467
                 + G  ++V + +     L G L
Sbjct: 400 GAGSTLDYGKWVEVLVEEATFFDLRGRL 427


>gi|52549017|gb|AAU82866.1| conserved hypothetical protein [uncultured archaeon GZfos21B5]
          Length = 430

 Score =  292 bits (748), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 113/446 (25%), Positives = 213/446 (47%), Gaps = 50/446 (11%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + F++++GC  N  D++ M  +  + G+E V    +AD++++NTC + ++    V   L 
Sbjct: 12  KVFIETFGCTANTGDTMEMRAILRNAGHEIVE-ESEADIVIVNTCTVTKRTELNVIKRLN 70

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            ++              VVVAGC+A A+ E       +V  ++G       P  ++ +  
Sbjct: 71  ELKE---------RGKAVVVAGCMAAAQPE-------LVKSILGDGVAMVTPRDIQASEK 114

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            +   D                       GV A +TI +GC   CT+C+V   RG   S 
Sbjct: 115 QRLDFD-----------------------GVIAVITIAQGCIGKCTYCIVKQARGKLKSY 151

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
              ++ +  +  +++G  EI +  Q+ +A+     D        LL  ++ ++G  R+R 
Sbjct: 152 KSEKICEAVKSAVESGANEIRITSQDSSAYGWSSTD---IKLPALLEQITSVEGDFRIRV 208

Query: 266 TTSHP---RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
              +P     + D L++A  + + +  + H+PVQSGSDR+L+ M R +   ++ +I+  I
Sbjct: 209 GMMNPFTLMPILDELLEAF-NTEKIFKFFHVPVQSGSDRVLREMKRNYKVADFVEIVTNI 267

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+      IS+DFI+GFP ET++DF A+++L+++I   +    ++SPR GT  S + + +
Sbjct: 268 RARFRQSTISTDFIIGFPTETEEDFFASLNLMEEIKPEKVNITRFSPRPGTEASKLTDLL 327

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
            E  K  R             + N    G  + VL+ + GK+ G ++ R    +++VL  
Sbjct: 328 -EREKKRRSRIFSTVYHNIVFAKNKELEGAELPVLVTETGKKGG-VIARDSAYRAIVLK- 384

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
            +  +G   KVR+ + K + L  +++
Sbjct: 385 DDLPLGTRYKVRVKEAKSTYLVADIL 410


>gi|227823742|ref|YP_002827715.1| MiaB-like tRNA modifying enzyme [Sinorhizobium fredii NGR234]
 gi|227342744|gb|ACP26962.1| MiaB-like tRNA modifying enzyme [Sinorhizobium fredii NGR234]
          Length = 404

 Score =  292 bits (747), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 118/421 (28%), Positives = 181/421 (42%), Gaps = 28/421 (6%)

Query: 44  MEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLV 103
           M       G          + I++NTC +  +A  +    +           ++     +
Sbjct: 1   MRAEAEKAGLN--------NAILVNTCAVTAEAVRQARQAI-------RRARRDNPHARI 45

Query: 104 VVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERL 163
           +V GC AQ E E     +  V+ V+G +   +         FG    +    V D     
Sbjct: 46  IVTGCAAQTEKETFAEMA-EVDAVLGNEEKLKSASYRSLPDFGVSA-EEKLRVNDIMSVR 103

Query: 164 SIVDGGYNRKRG-VTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGV 222
           +          G V AF+ +Q GCD  CTFC++PY RG   S  +  VVD+AR+L+++G 
Sbjct: 104 ATAPQMIRHIDGHVRAFIQVQNGCDHRCTFCIIPYGRGNSRSVPMGAVVDQARRLVESGY 163

Query: 223 CEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHG 282
            EI L G +  +  G  L G           L ++  ++RLR ++    +    L+    
Sbjct: 164 REIVLTGVDATS-YGADLPGTPTLGLLARTLLKQVPDILRLRLSSIDSIEADRHLLDLIA 222

Query: 283 DLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGE 342
           D    MP+LHL +Q G D ILK M RRH++ E R     +R +RP+I+  +D I GFP E
Sbjct: 223 DEPRFMPHLHLSLQHGDDLILKRMKRRHSSAEARAFCAEVRRLRPEISFGADMIAGFPTE 282

Query: 343 TDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQ 402
           T+  F     L +  G A    F YSPR GTP + M  Q D  +  ER   L+ K  E  
Sbjct: 283 TEAMFDNAARLAEDCGIAYLHVFPYSPRPGTPAARMP-QPDRALVKERAARLRGKGAELY 341

Query: 403 VSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKIST 462
            +  D  VG    +L+E +G      +  +     V  ++       +I+V+IT      
Sbjct: 342 AAHLDRMVGSEQTILVEMNG------LAHTENFTLV--DAAGLAPRALIEVKITGHDGKH 393

Query: 463 L 463
           L
Sbjct: 394 L 394


>gi|305432245|ref|ZP_07401408.1| 2-methylthioadenine synthetase [Campylobacter coli JV20]
 gi|304444593|gb|EFM37243.1| 2-methylthioadenine synthetase [Campylobacter coli JV20]
          Length = 439

 Score =  292 bits (747), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 108/439 (24%), Positives = 200/439 (45%), Gaps = 30/439 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + ++ S GC  N+ DS  M     +  YE  +    AD++++NTC   + A ++  + + 
Sbjct: 3   KLYLMSLGCNKNLVDSEIMLGRLSA--YELCDEPSKADVLIVNTCGFIDSAKKESINAIL 60

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +   +        D L+VV GC+ Q   EE+++  P V++  G   Y R+ E++   + 
Sbjct: 61  DLHEQRKK------DSLLVVTGCLMQRYREELMKELPEVDLFTGVGDYERIDEMI--LKK 112

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                ++ Y   +  +R+      +       AF+ I EGC++ C+FC +P  +G   SR
Sbjct: 113 TNLFSNSTYLQGENSKRIITGSNSH-------AFIKIAEGCNQKCSFCAIPSFKGKLKSR 165

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            +S ++ E + L+  G  + + + Q+ +++      GEK     L+  + +I+G+   R 
Sbjct: 166 EISSIIAELKDLVARGYKDFSFIAQDTSSYLFD--KGEKDGLIRLIDEVEKIEGIKAARI 223

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
              +P   S+ LIK      + + Y  +P+Q  SD +LK M R   +   +++++ ++S 
Sbjct: 224 LYLYPTSASEALIKRIIASKIFVNYFDMPLQHISDNMLKIMKRGANSTRLKEMLNLMKSA 283

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            PD  + + FIVG PGE+D DF    + +   G+ +   F YS    T   +M EQV   
Sbjct: 284 -PDSFLRTGFIVGHPGESDADFEEFCEFIKDFGFDRVSVFAYSKEEDTAAFDM-EQVPFK 341

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG----R-SPWLQSVVL 440
           V  +RL  ++K + E      +  VG+   V+      E    +     R    +   +L
Sbjct: 342 VINKRLKIIEKIVDEVIEKSFEKEVGKKRLVVCTGESSEGEFFIAAKDLRWDREIDGEIL 401

Query: 441 ----NSKNHNIGDIIKVRI 455
                  N  +G I +  I
Sbjct: 402 INESECGNLEMGQIYECEI 420


>gi|57241884|ref|ZP_00369824.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Campylobacter
           upsaliensis RM3195]
 gi|57017076|gb|EAL53857.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Campylobacter
           upsaliensis RM3195]
          Length = 436

 Score =  292 bits (747), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 108/451 (23%), Positives = 202/451 (44%), Gaps = 30/451 (6%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
            ++ S GC  N+ DS  M     +  Y   +    AD++++NTC   E A ++    +  
Sbjct: 4   LYLHSLGCNKNLVDSEIMLGRLEN--YTLCDEPKRADVLIVNTCGFIESAKKESIEAILN 61

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           +   +        + L+VV GC+ Q   EE++R  P V++  G   + ++  L+ + +  
Sbjct: 62  LHKERKE------NSLLVVTGCLMQRYKEELMRALPEVDLFTGVGDFEKIDTLILKKQ-- 113

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
               ++ Y  E+  +R+      +       AF+ I EGC++ C FC +P+ +G   SR 
Sbjct: 114 NLFSNSTYLQEEGVKRVITGSNSH-------AFIKISEGCNQSCAFCAIPHFKGRLKSRE 166

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
           +S ++ E   LI  G  + + + Q+ +++      G+K     L+  + ++KG+   R  
Sbjct: 167 ISSIIKELESLISRGYKDFSFIAQDSSSYLFD--KGQKAGLLRLIEEVEKLKGIRVARIL 224

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
             +P  +S+ +++      V + Y  +P+Q  SD++LK M R     +  +++  +R  +
Sbjct: 225 YLYPSTLSEEVVRKIIASKVFVNYFDMPLQHISDKMLKVMKRGSKKEQILKLLKMMRGAK 284

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
            D  + + FIVG PGE+++DFR   + V+   + +   F YS    T    M EQV + V
Sbjct: 285 -DSFLRTGFIVGHPGESEEDFRELCEFVEGFDFDRISVFGYSKEEDTLAFEM-EQVPKKV 342

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG----R-SPWLQS-VVL 440
              RL  L+K + +         VGQ   V+ E    E    +     R    +   +++
Sbjct: 343 INARLKILEKIVAKSLEKSFKKEVGQKRLVVCEGESSEGEFFIAGKDLRWDREIDGEILI 402

Query: 441 NSKNHNI---GDIIKVRITDVKISTLYGELV 468
           N     I   G I +  IT      L  + +
Sbjct: 403 NESECGILERGQIYECEITQALDVKLIAKAL 433


>gi|332185879|ref|ZP_08387626.1| RNA modification enzyme, MiaB family protein [Sphingomonas sp. S17]
 gi|332014237|gb|EGI56295.1| RNA modification enzyme, MiaB family protein [Sphingomonas sp. S17]
          Length = 414

 Score =  292 bits (747), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 125/440 (28%), Positives = 203/440 (46%), Gaps = 34/440 (7%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           + S GC++N+ +S  +  +  + G E        D++V+N+C +  +A ++  + +    
Sbjct: 9   IISLGCRLNIAESETIRAL--AAGRE--------DMVVVNSCAVTNEAVKQTRAAI---- 54

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
                  K   D  +VV GC AQ +        P V  V+G     R       A     
Sbjct: 55  ---RRAAKARPDAQIVVTGCAAQIDP-TSFAAMPEVARVLGNADKLRPESW---ASTEPM 107

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           +V     V +    L     G+ R     AF+ +Q GCD  CTFC++P  RG   S    
Sbjct: 108 LVADLSRVVETAPHLVSAFAGHAR-----AFVEVQNGCDHACTFCIIPTGRGPSRSVPAG 162

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
            V++   + ++ G  E+ L G ++ +  G  L G+      +   L+ +  L RLR ++ 
Sbjct: 163 LVIERIARAVELGHQEVVLTGVDLTS-YGHDLPGQPGLGLLVERILTHVPALPRLRLSSL 221

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
              ++ D L +       +MP+LHL +Q+G+D ILK M RRH+  +   I++R+ S RP+
Sbjct: 222 DSIEIDDRLFELVTGEPRVMPHLHLSLQAGNDLILKRMKRRHSRAQSVAIVERMLSARPE 281

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           IAI +D I GFP E D     T+ L+D      A  F YS R GTP + M  QV   ++ 
Sbjct: 282 IAIGADLIAGFPTEDDAMAADTLALIDDCRIVHAHIFPYSARDGTPAARMP-QVPHPLRR 340

Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIG 448
           ER   L++    ++  +  A +G   +VL+E+ G       G +P    +   S     G
Sbjct: 341 ERAAKLREAAARRRRDWLAAQIGGTRDVLVERPGTR-----GHAPDFADIHF-SPATEPG 394

Query: 449 DIIKVRITDVKISTLYGELV 468
            I +VR+T    + L G+LV
Sbjct: 395 RIARVRVTAATETHLIGQLV 414


>gi|329295563|ref|ZP_08252899.1| ribosomal protein S12 methylthiotransferase [Plautia stali
           symbiont]
          Length = 345

 Score =  292 bits (747), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 103/361 (28%), Positives = 169/361 (46%), Gaps = 30/361 (8%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P R    S GC  N+ DS R+     ++GY+ V   DDA+++++NTC   + A ++    
Sbjct: 7   PPRVGFVSLGCPKNLVDSERILTELRTEGYDVVPRYDDAEIVIINTCGFIDSAVQESLEA 66

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G              +  V+V GC+  A+ ++I    P V  + GP +Y ++   +   
Sbjct: 67  IGEA---------LNENGKVIVTGCLG-AKVDQIREVHPKVLEITGPHSYEQVLSHVHTY 116

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
                        E       + + G        A+L I EGC+  CTFC++P  RG   
Sbjct: 117 ---------VPKPEHNPFLSLVPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGDLD 167

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNA------WRGKGLDGE--KCTFSDLLYSLS 255
           SR +  V+DEA++L++ GV E+ ++  + +A       R    +G   K +   L   L+
Sbjct: 168 SRPIDAVLDEAKRLVEAGVKELLVISLDTSAYGVDVKHRTGFWNGSPVKTSMVSLCEQLA 227

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
           ++   VRL Y   +P       + A G    ++PY  +P+Q  S RILK M R  T    
Sbjct: 228 KLGVWVRLHYVYPYPHVDDVIPLMAEG---KILPYFDIPLQHASPRILKLMKRPGTVERT 284

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
            + I R R + P++ + S FIVGFPGET++DF+  +D + +        F+YSP  G   
Sbjct: 285 LERIKRWREICPELTLRSTFIVGFPGETEEDFQMLLDFLREARLDLVGCFQYSPVEGATA 344

Query: 376 S 376
           +
Sbjct: 345 N 345


>gi|188582088|ref|YP_001925533.1| MiaB-like tRNA modifying enzyme [Methylobacterium populi BJ001]
 gi|179345586|gb|ACB80998.1| MiaB-like tRNA modifying enzyme [Methylobacterium populi BJ001]
          Length = 410

 Score =  292 bits (747), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 118/435 (27%), Positives = 187/435 (42%), Gaps = 32/435 (7%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           ++GC++N  +S  +     +         +  DL+V+NTC +  +A  +    + R+   
Sbjct: 7   TFGCRLNTVESEVVRGHAEA-------GAEGRDLVVVNTCAVTAEAGRQARKAIRRLA-- 57

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
                +E     +VV GC A+ E        P V  +VG     R        R G    
Sbjct: 58  -----RERPGAEIVVTGCGAEVERAH-YADMPEVARLVGNAAKLRPGSW----RSGAVPP 107

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
             D       E   I            AF+ +Q GCD  CTFCV+P+ RG   S  +++ 
Sbjct: 108 PEDIMAVRTAEPTRI----LGMSGHTRAFVPVQNGCDHRCTFCVIPFGRGHSRSVPVAEA 163

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270
           V + R+++++G  E+ L G ++ A  G+ L  +      +   LSE+  L RLR ++   
Sbjct: 164 VAQVRRIVEHGGREVVLTGVDLTA-YGRDLASDLSLGRLVRTILSEVPDLARLRLSSIDS 222

Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330
            +    LI A  +   LMP++HL +Q+G D ILK M RRH   +  ++   +R +RP + 
Sbjct: 223 VEADPELIAAFAEESRLMPHVHLSLQAGDDLILKRMKRRHARADAIRLCRTLRDLRPGLV 282

Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER 390
             +D I GFP ET+  F  ++DLV++        F YSPR GTP + M   V  +V   R
Sbjct: 283 FGADLIAGFPTETEAQFARSLDLVEECELTHLHVFPYSPRPGTPAARMP-AVPGDVVRAR 341

Query: 391 LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDI 450
              L+           D  VG    VL E+         GR+     V   ++    G+I
Sbjct: 342 AARLRAAGAASLARHLDGEVGTRRRVLTERGD------TGRTEAFSLVRF-AEPVPPGEI 394

Query: 451 IKVRITDVKISTLYG 465
            +V +       L  
Sbjct: 395 REVTVNGHDGQALLA 409


>gi|167533429|ref|XP_001748394.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163773206|gb|EDQ86849.1| predicted protein [Monosiga brevicollis MX1]
          Length = 466

 Score =  291 bits (746), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 105/450 (23%), Positives = 195/450 (43%), Gaps = 34/450 (7%)

Query: 15  SQIVDQCIVP--QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHI 72
            Q      +P  +  F++++GC  N  D   M  +  + GY   +  + ADL +LN+C +
Sbjct: 38  EQAEGDSFIPGSKTIFLRTWGCSHNNSDGEYMAGLLSAAGYTISDKREGADLWILNSCTV 97

Query: 73  REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT 132
           +  + +   + +   R+          ++ VV+AGCV Q                     
Sbjct: 98  KTPSEDTFNNEIRDARS---------RNIPVVLAGCVPQTM------------------Q 130

Query: 133 YYRLPELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCT 191
             R+ E++E    G+ V +     V+ +    + +D    R+  +   + I  GC   CT
Sbjct: 131 IDRVVEVVEETLQGRTVRLLGSKKVDGRKTGGTALDLPKIRRNPLIEIIPINTGCLNKCT 190

Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLL 251
           +C   + RG   S ++ ++V   +++I  GV EI L  ++  A  G+ ++         +
Sbjct: 191 YCKTKHARGDLGSYTIQEIVQRVQQVIAEGVVEIWLTSEDTGA-YGRDINTSIPELLRAI 249

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
            ++     +VRL  T           I        +  ++H+P+QSG++ IL +M R +T
Sbjct: 250 LAVVPAGVMVRLGMTNPPYIVEHVQAIAECLRHPRMYKFIHIPIQSGANPILHAMQREYT 309

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
             ++  + D +    P + I++D I GFPGETD DF  T ++V +  +   F+ ++ PR 
Sbjct: 310 REDFCFVADTLLEQVPALTIATDIICGFPGETDADFEDTFEIVRRYHFPSLFTNQFFPRP 369

Query: 372 GTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR 431
           GTP + M E+VD  +  +R   L    R       D  +     VL+     +    V  
Sbjct: 370 GTPAAAM-ERVDPRLVKQRTKELSDYFR--GYRVYDDQLDSYQRVLVTDTATDNVHFVAH 426

Query: 432 SPWLQSVVLNSKNHNIGDIIKVRITDVKIS 461
           +     V++ +    +G +I V+IT+V   
Sbjct: 427 NRSFDQVLVPANPDFMGKLIVVKITNVNKF 456


>gi|78777931|ref|YP_394246.1| hypothetical protein Suden_1737 [Sulfurimonas denitrificans DSM
           1251]
 gi|123768589|sp|Q30PS0|RIMO_SULDN RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|78498471|gb|ABB45011.1| conserved hypothetical protein [Sulfurimonas denitrificans DSM
           1251]
          Length = 439

 Score =  291 bits (746), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 101/459 (22%), Positives = 201/459 (43%), Gaps = 40/459 (8%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           +  +  + S GC  N+ D+  M     +  +E  ++  DAD+I++NTC   + A ++  +
Sbjct: 1   MGNKLHIVSLGCTKNLVDTEVMMGKLQN--FELTDNQSDADVIIVNTCGFIDAAKQESIN 58

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-- 140
            +  + + +        D ++V+AGC+++   EE+ +  P V++  G   Y ++ ELL  
Sbjct: 59  TVLNLHDARKE------DSVLVMAGCLSERYKEELAKDMPEVDIFTGVGDYDKIDELLVE 112

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           +++RF + V   D +                      A++ + EGC++ C+FC +P  +G
Sbjct: 113 KKSRFSEAVYLIDGA------------ERVVTGSTYHAYIKLSEGCNQTCSFCAIPSFKG 160

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
              SR+L  +  E   L+  G  + + + Q+ +++        K   S L+  +  I+G+
Sbjct: 161 KLNSRTLDSIAKEVESLVKKGYWDFSFVSQDSSSYLRD--KNVKDGLSLLIQRVELIEGV 218

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
              R    +P   S  L+K     ++   Y  +P+Q  +D +L+ M R     +  ++++
Sbjct: 219 KSARILYLYPSTTSMALLKNIAKSEIFHNYFDMPIQHINDDMLRIMKRGFGKKQTLELLE 278

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
            ++S+ P+  I + FIVG PGE+ + F          G+ +   F YS    TP   M +
Sbjct: 279 FMKSL-PNSFIRTSFIVGHPGESQEMFDEMCKFASSFGFERINVFAYSDEETTPAHEMSD 337

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGR----SPWL 435
           ++   V  +R   L K   +   +     +G+   ++I+K   E    L  R    +P +
Sbjct: 338 KIAAKVINKRASILGKIAADVMQASLKKEIGKETLLVIDKESDEHEYLLSARKILWAPDI 397

Query: 436 QSVVLNSK-----NHNIGDIIKVRITDVKISTLYGELVV 469
              +  +        N G I    IT      + G ++ 
Sbjct: 398 DGEIYVNDRSGEEELNFGAIYNAEIT-----DMVGNILT 431


>gi|256389762|ref|YP_003111326.1| MiaB-like tRNA modifying enzyme YliG [Catenulispora acidiphila DSM
           44928]
 gi|256355988|gb|ACU69485.1| MiaB-like tRNA modifying enzyme YliG [Catenulispora acidiphila DSM
           44928]
          Length = 474

 Score =  291 bits (745), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 125/484 (25%), Positives = 207/484 (42%), Gaps = 57/484 (11%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNS---MDDADLIVLNTCHIREKAAEKVYS 82
              + + GC  N  DS  +     S G+E  +      ++D+IV+NTC   E A +    
Sbjct: 7   TVSLVTLGCGRNEVDSEELAARLESAGWELADPDSVPGESDIIVVNTCGFIESAKKTSLE 66

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            L               +  VV  GCVA+  G+ +    P V+ V+    Y  + + L+ 
Sbjct: 67  TLVAA---------SNAEAKVVAVGCVAERYGKRLAEALPEVDAVLSFDDYPDISQRLDD 117

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVD---------------------------GGYNRKRG 175
              GK+     ++  D+   L I                               + RKR 
Sbjct: 118 VVRGKK--HESHTPRDRRRLLPIAPVDRANNSSVVAPGHGIVRQDSEAGLGGSIFLRKRL 175

Query: 176 ---------VTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEIT 226
                    V A L +  GCD+ C+FC +P  RG  ISR+   +V EA  L D GV E+ 
Sbjct: 176 GGGGPLGDGVVAPLKLASGCDRRCSFCAIPSFRGAFISRTPDDIVAEAEWLADAGVRELI 235

Query: 227 LLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV 286
           L+ +N  +  GK   G+      LL  L+ +  + R+R +   P ++   LI+A G +  
Sbjct: 236 LVSENSTS-YGKDF-GDLQALEKLLPRLTSL--VSRVRISYLQPAELRPTLIEAIGGIPG 291

Query: 287 LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDD 346
           +  Y  L  Q  S  +L+ M R      + +++D+IR + P+  + S+FIVGFPGET+DD
Sbjct: 292 VASYFDLSFQHASGPVLRRMRRFGDRERFLELLDKIRVIAPEAGMRSNFIVGFPGETEDD 351

Query: 347 FRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFN 406
           +      V +        F YS   GT    + ++V+++  A+R+  L    R+      
Sbjct: 352 YGEVERFVSEARLDAVGVFGYSDEEGTEALGLPDKVEQSQIADRVARLTVISRKAMDDRA 411

Query: 407 DACVGQIIEVLIEKHGKEKGKLVGRSPWLQS-VVLNSKNHNIGDIIKVRITDVKISTLYG 465
              VG  IEV+++  G+  G    ++P +   V L   +   GD+++ R+T    + L  
Sbjct: 412 AERVGSEIEVIVKHPGR--GWAAHQAPAVDGFVTLTGSSSEAGDVLRARVTGQDGANLIA 469

Query: 466 ELVV 469
           E + 
Sbjct: 470 EALA 473


>gi|332297178|ref|YP_004439100.1| Ribosomal protein S12 methylthiotransferase rimO [Treponema
           brennaborense DSM 12168]
 gi|332180281|gb|AEE15969.1| Ribosomal protein S12 methylthiotransferase rimO [Treponema
           brennaborense DSM 12168]
          Length = 508

 Score =  291 bits (744), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 119/517 (23%), Positives = 202/517 (39%), Gaps = 86/517 (16%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +FF+  +GC  N  D   +     ++G  +     +AD+I++N+C   E A  +  + L 
Sbjct: 3   KFFLDQHGCAKNQVDGELIITRLQNKGLCKTEIAAEADIIIINSCGFIESAKTESLNALL 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
             +           D  +++AGC+A+   E+     P  + + G      +  L+E    
Sbjct: 63  EAKEA-------YPDAKILLAGCLAERYAEQFAEALPEADGIFGNGDLTAIDSLVEPLLS 115

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G   V     V+   + +             +AF+ I EGCD  C+FC +P  RG   SR
Sbjct: 116 GGHPV-----VKPAQQGVCCGSRSELLSFPGSAFVKITEGCDNRCSFCAIPLIRGNLRSR 170

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAW--------------RGKGLDGEKCTFSDLL 251
               +V E  +L  NG+ EI L+GQ+  A+              R  G  G +   + LL
Sbjct: 171 DADDIVREIDELTRNGIFEINLIGQDSAAYGMDGENPHDPAVWARFDGASGTQSPLARLL 230

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
             +S + G   LR    HP      ++      + L+ Y  +P QSG+D I+K+MNR  +
Sbjct: 231 EKISALNGSFWLRLLYIHPDHFPPDILPVIARDERLLAYFDIPFQSGADSIIKAMNRTGS 290

Query: 312 AYEYRQIIDRIRSVRP-----DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
              Y  ++  IR          +++ + F+ GFPGET+DD + T   ++ I    +  F 
Sbjct: 291 RVRYEDMVKNIRGTLDAVKDGGVSLRTTFLTGFPGETEDDAQETERFLENISPDWSGCFP 350

Query: 367 YSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-----H 421
           YS   GTP +++ +QV   +  +R   L+              + +  +VLIE+      
Sbjct: 351 YSKEDGTPAASLKKQVSRKIAEKRAEALRCAQERITAERLKRHLNRTYDVLIEEIIEGGD 410

Query: 422 GKEKGKLVGR----SPWLQSVVLN------------------------------------ 441
           G+  G  +GR    +P +   V+                                     
Sbjct: 411 GEGTGLAIGRAWFQAPEVDGAVVVRYDQDETADQPETAGSESPAESLKTGEPCPDAKQAG 470

Query: 442 ----------SKNHNIGDIIKVRITDVKISTLYGELV 468
                     +     G  +KV +T V    L G +V
Sbjct: 471 SAPHSGSGSRNAPVVPGRTVKVLVTGVSGFDLDGRIV 507


>gi|217978009|ref|YP_002362156.1| MiaB-like tRNA modifying enzyme [Methylocella silvestris BL2]
 gi|217503385|gb|ACK50794.1| MiaB-like tRNA modifying enzyme [Methylocella silvestris BL2]
          Length = 433

 Score =  291 bits (744), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 112/422 (26%), Positives = 178/422 (42%), Gaps = 33/422 (7%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +   V S+GC++N+ +S  M       G E        +LI++NTC +  +A  +    +
Sbjct: 8   RAVEVASFGCRLNLVESEAMRRAAEKAGRE--------NLIIVNTCAVTAEATRQARQAI 59

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
                      +E     ++V GC A+ +      + P V+ V+G             A 
Sbjct: 60  -------RRIRRERPSAEIIVTGCAAEIDPGS-FSQMPEVSRVLGNAGKSD-----AAAW 106

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
                V+    +          +G  +  R   AFL +Q GCD  CTFC++P+ RG   S
Sbjct: 107 ASAEPVEAQSIMNAAGPLNIPAEGVEDHTR---AFLAVQTGCDHRCTFCIIPFARGPSRS 163

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
                ++   R+L D G  EI L G ++ +  G+ L G+      +   L     L RLR
Sbjct: 164 SPAEAILASVRRLTDQGFREIVLTGVDLTS-YGQDL-GDIRLGGLVKAILKAAPELERLR 221

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
            ++    +    L  A  +   L P+LHL +Q+G D ILK M RRH   +  ++   ++ 
Sbjct: 222 LSSIDCIEADADLFSAFAEEPRLAPHLHLSLQAGDDMILKRMKRRHLRADAVRLCAELKR 281

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           +RPDI   +D I GFP ET+  F  T  L++  G A    F +SPR GTP + M      
Sbjct: 282 LRPDIVFGADLIAGFPTETEAMFENTASLIEDCGLAYLHVFPFSPRPGTPAAKMPAVAPT 341

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
            VK  R   L+          +   +G+ + VL E+ G       GR+     V  +   
Sbjct: 342 LVKQ-RAARLRLAGETALARHHATKIGKTLRVLTERGG------FGRAADFTLVKTDGAP 394

Query: 445 HN 446
            +
Sbjct: 395 PS 396


>gi|269793254|ref|YP_003318158.1| MiaB-like tRNA modifying enzyme YliG [Thermanaerovibrio
           acidaminovorans DSM 6589]
 gi|269100889|gb|ACZ19876.1| MiaB-like tRNA modifying enzyme YliG [Thermanaerovibrio
           acidaminovorans DSM 6589]
          Length = 427

 Score =  290 bits (743), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 113/451 (25%), Positives = 189/451 (41%), Gaps = 36/451 (7%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + ++ +V S GC  N  D  R   +   +GY +V+    ADL ++NTC     A ++   
Sbjct: 1   MDKKVYVLSLGCAKNRVDGERFLGVALERGYVQVHEPQGADLCIINTCGFLMSAVKENLD 60

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +     L+    + G    + V GC+     EE+ R    V+ +   + Y  L E L  
Sbjct: 61  AILEAEELR----RRGLIGSLAVVGCLVNRYEEELRREL-QVDFLGRTECYRELGEFLGG 115

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           A  G R                           V  +L + EGC   C +C +P  RG  
Sbjct: 116 ASEGPR--------------------RPLGGSEVVRYLKVAEGCSNRCAYCAIPLIRGDL 155

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            S  ++ +V EA  L++ G  EI L+ Q++    G+ L  +     D +   + ++G   
Sbjct: 156 RSLPVAHLVREAELLLEQGAREICLVAQDLT-RYGEDLGTDLMELLDQME--ATVRGHGV 212

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LR    HP  ++  L++     DV+  YL +PVQ  SDR+L SM R     +  +     
Sbjct: 213 LRLLYLHPTRVTRELVERVASSDVVASYLDVPVQHASDRVLASMGRAMGYEDAVRPFLEA 272

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R V P  A+ +  +VG+PGE  +DF A +  +++    +  +F +SP  GT    +  +V
Sbjct: 273 RQVDPLFAMRTTLMVGYPGEGREDFDALIRFLEEARPDRVGAFVFSPEEGTQAFQLPRRV 332

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSV 438
                  RL  L  +  E  +       G+ + VL+E    E G+ VGRS    P +   
Sbjct: 333 SGRTARSRLDRLMARAAEVSLDRQRLMEGREVRVLLEAV--EDGQWVGRSYREAPEVDGS 390

Query: 439 VL--NSKNHNIGDIIKVRITDVKISTLYGEL 467
           +L    +   +G   +V + +       G +
Sbjct: 391 ILIPEGEGLRVGGFYRVLLEEALEHDFIGRV 421


>gi|289549352|ref|YP_003474340.1| MiaB-like tRNA modifying enzyme [Thermocrinis albus DSM 14484]
 gi|289182969|gb|ADC90213.1| MiaB-like tRNA modifying enzyme [Thermocrinis albus DSM 14484]
          Length = 407

 Score =  290 bits (743), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 131/432 (30%), Positives = 214/432 (49%), Gaps = 28/432 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +  V + GC+ N +D   +   F  +GY      DDAD+ V+NTC + ++A       + 
Sbjct: 2   KVRVVNLGCRSNFFDGQFILQKFIEKGYIL---GDDADIYVVNTCGVTKEAERSSRQAIR 58

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           RI+       +   + +VVV GC AQ +  E+      V++VVG     RL +L+E    
Sbjct: 59  RIK-------RNNPNAVVVVTGCYAQIKPHELST-MEEVDLVVGNTHKTRLVDLVEEYLQ 110

Query: 146 GK--RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           GK  RV   +   +   E   +V   Y R R    F+ IQEGC+KFC+FCV+PY RG   
Sbjct: 111 GKGQRVAVENIFRQSTLESFHLVT-FYERSRP---FVKIQEGCNKFCSFCVIPYARGKVR 166

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           S    +V++E   L   G  E+ + G  + +  G  +     T   LL  + +I+G+  +
Sbjct: 167 SVPPQKVLEEIHLLAQKGFEEVVITGTQL-SQYGWDM---GTTLGKLLKEMVKIEGIKLI 222

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R ++ HP ++ + L+    + + + P+ HLP+QSGS RIL+ M R +T  EYR++++++ 
Sbjct: 223 RLSSLHPAELEEELLTIITEEEKIAPHFHLPLQSGSLRILQLMERGYTPDEYRRLVEKLV 282

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
             RP  AI +D IVGFP ET++DF  T   ++ +  A    F YS R  T  S M  +V 
Sbjct: 283 EKRPLSAIGTDVIVGFPTETEEDFEETYRFLESLPIAYMHIFPYSDRPFTKASRMEGKVP 342

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
            +VK  R+  L++    ++ SF   C G+ +   +   GK        +     +   S 
Sbjct: 343 SSVKDRRVEILKELDTRKRESFRKRCEGKKLRATVLGEGKLL------TENYLEIE-RSV 395

Query: 444 NHNIGDIIKVRI 455
               G +++V +
Sbjct: 396 ELPAGRVVEVVV 407


>gi|91974995|ref|YP_567654.1| MiaB-like tRNA modifying enzyme [Rhodopseudomonas palustris BisB5]
 gi|91681451|gb|ABE37753.1| MiaB-like tRNA modifying enzyme [Rhodopseudomonas palustris BisB5]
          Length = 443

 Score =  290 bits (743), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 121/425 (28%), Positives = 179/425 (42%), Gaps = 42/425 (9%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
             + ++GC++N ++S  +       G          D IV+N+C +  +A  +    + +
Sbjct: 3   VEIVTFGCRLNAFESEVIRREAEGAGLH--------DAIVINSCAVTNEAVAQARQQIRK 54

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER---- 142
           ++       +E     +VV GC AQ E          V+ V+G     R           
Sbjct: 55  LK-------RERPGARIVVTGCAAQTEPATFAG-MDEVDRVIGNDDKMRSEAWRAARIAF 106

Query: 143 ---------ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC 193
                    A     V D     E     +     G  R      F+ +Q GCD  CTFC
Sbjct: 107 DADTAFGLGAEQKIAVADIMAVREMAPHLVDGYQSGLPRV-----FVQVQNGCDHRCTFC 161

Query: 194 VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS 253
           ++P+ RG   S  +  VVD+ R L + G  EI L G ++ +  G  L G     + +   
Sbjct: 162 IIPFGRGNSRSVPIGAVVDQVRALTERGHAEIVLTGVDLTS-YGADLPGTPKLGALVKKV 220

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
           L  +  L RLR ++    +    L+ A      LMP+LHL +Q+G D ILK M RRH   
Sbjct: 221 LRHVPELQRLRISSIDSIEADRDLLDALAGEQRLMPHLHLSLQAGDDLILKRMKRRHLRD 280

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
           +     + +R +RPDIA+ +D I GFP ET+  FR ++DLVD  G      F YS R GT
Sbjct: 281 DAIAFCEEVRRLRPDIALGADLIAGFPTETEAMFRRSLDLVDDCGLTFLHVFPYSKRPGT 340

Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSP 433
           P + M  Q+D  +  ER   L+            A +GQ   VLIE          GR+ 
Sbjct: 341 PAARMP-QLDGRIIRERAARLRAAGEAALQRRLQAEIGQTRAVLIESA------TQGRTE 393

Query: 434 WLQSV 438
               V
Sbjct: 394 HFIPV 398


>gi|328947215|ref|YP_004364552.1| RNA modification enzyme, MiaB family [Treponema succinifaciens DSM
           2489]
 gi|328447539|gb|AEB13255.1| RNA modification enzyme, MiaB family [Treponema succinifaciens DSM
           2489]
          Length = 484

 Score =  290 bits (743), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 112/456 (24%), Positives = 198/456 (43%), Gaps = 48/456 (10%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           +  ++FF+  +GC  N  D   +       G+E+V   + ADLI++N+C   E A ++  
Sbjct: 1   MTSKKFFLDQHGCAKNQVDGELIMSRLLRLGFEQVFEPEKADLIIVNSCGFIESAKKESL 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             L   R+          +  +++AGC+A+   +   +  P  + +VG      +   ++
Sbjct: 61  DSLIGARSA-------FPNAKILLAGCLAERYADVFKKDLPEADGIVGNGNLELIDSAVK 113

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
                KR V      E K       +   + K   +AF+ I EGCD  C+FC +P  RG 
Sbjct: 114 DLFEEKRPV---LKAEQKGVCCGERNSLLSFKG--SAFVKITEGCDNKCSFCAIPIIRGK 168

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT--------------- 246
             SR+  ++V E + L+  G+ E+ L+GQ++ A+     D E  +               
Sbjct: 169 LRSRNSDEIVSEIKSLLARGIFEVNLIGQDLAAYGCGEEDKEFSSEKNWHEIIYKNLKNP 228

Query: 247 ---------------FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL 291
                             L+  +S ++G   +R    HP   +  +++   +    +PY 
Sbjct: 229 VYAEENFYEKNGDSPLCRLIKKISALEGKFWIRLLYIHPDHFNKDILEVMKNDSRFLPYF 288

Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351
            +P QSG ++I+++MNR+ +   Y  +I  IRS  P+  I + F+ GFPGETD++   T 
Sbjct: 289 DIPFQSGDEKIIRAMNRKGSFENYTSLIKTIRSYFPESCIRTTFLTGFPGETDENASRTE 348

Query: 352 DLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVG 411
           + +  I    +  F YS    T    M  QV       R   L++   E          G
Sbjct: 349 EFLKSIKSDWSGCFPYSREEDTAAYKMKSQVSLKKAKTRAFRLEEMQHEITSESLKMRCG 408

Query: 412 QIIEVLIEK-----HGKEKGKLVGRSPWLQSVVLNS 442
           +I +VLIE+      G ++G  +GR+ W  +  ++ 
Sbjct: 409 KIYDVLIEEIIENKDGTDEGLAIGRA-WFDAPEVDG 443


>gi|68445550|dbj|BAE03259.1| hypothetical conserved protein [unclutured Candidatus Nitrosocaldus
           sp.]
          Length = 454

 Score =  290 bits (743), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 125/470 (26%), Positives = 217/470 (46%), Gaps = 52/470 (11%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + +++ YGC  ++ D   +  +   +GYE  ++ D+AD  ++ TC +++  A ++   + 
Sbjct: 9   KVWLEVYGCSSSLSDGEIIAGIIVGKGYELASNFDEADASIIVTCVVKDATANRMVERIK 68

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R+ +             +VVAGC+A+AE   I R +P  ++V GP    R+   L  A  
Sbjct: 69  RLSSKP-----------LVVAGCMAKAEPNRIRRFNPRASIV-GPNAIDRVDTALASALD 116

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           GK +V  D S++        V     R   V + + I  GC   CTFC     +G   S 
Sbjct: 117 GKGIVLLDGSMQK-------VGLPKIRVNPVISMVQIGSGCLSECTFCETRIAKGRLTSY 169

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            +  +V + R+ ++ G  E+ L   +  A  G+ +        +L+ ++  I     +R 
Sbjct: 170 RIGDIVRQVREDVEQGCREVWLTSTDNGA-YGRDI---GTNLVELIKAVCSIDAEFMIRV 225

Query: 266 TTSHPRDMS---DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
              +P+ +    D LI+A+ D D +  ++H+PVQSGSDR+L+ M R H A  +  ++ R 
Sbjct: 226 GMMNPQYLPLMLDDLIEAYRD-DKVFKFIHIPVQSGSDRVLRLMRRGHRASTFIDMVKRF 284

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R       I++D IVGFP E+++DF A++DL+ ++        KYS R GT  S M EQ+
Sbjct: 285 RRELKLCTIATDMIVGFPSESEEDFDASIDLLLEVEPDIVNVSKYSARPGTEASRM-EQL 343

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV--- 439
            + V  ER   +   +     S N A  G    VL+++     G + GR+   + +    
Sbjct: 344 SKQVINERSKVMHDVVSRVCYSRNLAWKGWEGTVLVDELTDAGGGVQGRNFAYKPIYLIR 403

Query: 440 ---------------------LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                                +N+    +G  I+VRI  V   +L G ++
Sbjct: 404 KGRADNNYDDYSNGHNSFNNDVNNARRLLGSWIRVRIDRVTTHSLVGSII 453


>gi|312879755|ref|ZP_07739555.1| MiaB-like tRNA modifying enzyme [Aminomonas paucivorans DSM 12260]
 gi|310783046|gb|EFQ23444.1| MiaB-like tRNA modifying enzyme [Aminomonas paucivorans DSM 12260]
          Length = 454

 Score =  290 bits (742), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 119/411 (28%), Positives = 198/411 (48%), Gaps = 22/411 (5%)

Query: 21  CIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVN-SMDDADLIVLNTCHIREKAAEK 79
            +   R      GC+ N Y+   +      +G   V+ S +D D +VL TC +   A  K
Sbjct: 6   SLAGYRVGFVVLGCRTNQYEGDALASELAERGAILVDPSSEDLDGVVLLTCTVTAVADRK 65

Query: 80  VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL 139
                  +R       +     ++V AGC AQ       RR    + +VG +    +P+L
Sbjct: 66  -------VRQELRRLRRRHPRAILVAAGCWAQEADPREARRL-GADHLVGNRLKAAIPDL 117

Query: 140 LERARFGKRVVDT---DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
           L R R G+ V      D  V + ++ L +        R   AF+ +Q+GC   C +C+VP
Sbjct: 118 LSRLRAGEEVPFLNRRDVGVCEDWDDLRLSRTC----RHTRAFVKVQDGCSHGCRYCIVP 173

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256
             RG  +SR    V++E R L+ +G  E+ L G ++    G+          +L+  L+ 
Sbjct: 174 RVRGRSVSRPPEDVLEEVRGLVGSGCREVVLTGVHLG-LYGRD---RGTDLGELVKRLAR 229

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           ++GLVRLR+ +  P  + + L+   G+ ++  P+LHLP+QSG D +L  M R +TA  + 
Sbjct: 230 VEGLVRLRFGSLEPFGLGESLLDVLGETEIFCPHLHLPLQSGDDGVLDRMGRGYTAAAFA 289

Query: 317 QIIDRIRSVR-PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
           ++++  R     D+ +S+D +VGFPGE +  FR T+DLV+ +   +   F YSPR GTP 
Sbjct: 290 RLVEAARRRLGEDLHVSTDLLVGFPGEEEVPFRNTLDLVETLELGRLHVFPYSPRAGTPA 349

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG 426
           +         ++ ER+       R     F    +G+ +EVL+E+  + +G
Sbjct: 350 AAWPRPDPAALR-ERVQRALGLGRTLLDRFASRFLGREVEVLVERASEGEG 399


>gi|270308233|ref|YP_003330291.1| tRNA modification enzyme, MiaB family [Dehalococcoides sp. VS]
 gi|270154125|gb|ACZ61963.1| tRNA modification enzyme, MiaB family [Dehalococcoides sp. VS]
          Length = 416

 Score =  290 bits (742), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 114/434 (26%), Positives = 198/434 (45%), Gaps = 33/434 (7%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
             + + GC++N  ++  +   F   GY  V+  D+ D+ +LNTC +   A  K    +  
Sbjct: 4   IALDTLGCKLNQAETEAIGREFAEAGYRLVSPQDNWDIYILNTCTVTHVADRKARYQVRI 63

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
            R       +   +  + + GC A+  G+ I    P  N++            L+  R  
Sbjct: 64  AR-------RHNPNGFICLTGCYAENGGDGITC--PDANLI------------LDNERKA 102

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
             V +       +    ++ + G  R     +F+ IQ+GCD FC++C+VP+ R  +  R 
Sbjct: 103 DIVAEIVRLFPLEVSAKALYEHGRTR-----SFIKIQDGCDNFCSYCIVPFVRRNKSCRE 157

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
           + +++ E       G  EI L G  +  +   G +      + L+ S+ E   + RLR +
Sbjct: 158 VGEIISEINLRQAEGYQEIVLTGTEIGEYTSGGFN-----LAGLIKSILEFTFIPRLRLS 212

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
           +  P +++  L+ A      L  + H+ +QSGSDRIL  M R +   +Y   ++ IR+  
Sbjct: 213 SLQPNEITPQLL-ALWQNPRLCNHFHIALQSGSDRILSFMQRPYALTDYTCTLESIRACL 271

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           PD A+++D IVGFPGETD+DF  ++  V+K G+A+   F YS R GT  S M  ++D  V
Sbjct: 272 PDTAVTTDVIVGFPGETDEDFLLSLRYVEKAGFARVHPFPYSERPGTFASAMSGKLDPAV 331

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHN 446
              RLL +    +   + +    +G   +VL E   +  G   G +P    V        
Sbjct: 332 IKTRLLQMMFAAKNASLQYRRQKIGMERDVLWENKTR-GGLWFGYTPDYIRVYGKFNQKP 390

Query: 447 IGDIIKVRITDVKI 460
           +  I +V++  +  
Sbjct: 391 VNTISRVKLGKIHT 404


>gi|269792240|ref|YP_003317144.1| RNA modification enzyme, MiaB family [Thermanaerovibrio
           acidaminovorans DSM 6589]
 gi|269099875|gb|ACZ18862.1| RNA modification enzyme, MiaB family [Thermanaerovibrio
           acidaminovorans DSM 6589]
          Length = 439

 Score =  289 bits (741), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 128/431 (29%), Positives = 214/431 (49%), Gaps = 23/431 (5%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P RF V S+GC++N Y+   +     +      ++ ++AD +VL +C +  +A  K    
Sbjct: 4   PFRFKVISHGCRVNQYEGDALAAELEAA-GGIPSAPEEADCLVLVSCAVTAEAERKTRQE 62

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           L R++       +     L+VV GC      ++ L     V+V V       +P L+ER 
Sbjct: 63  LRRLK-------RRSPGALLVVCGCWVNRVSDQDLESM-GVDVAVSNGLKGTIPGLVERH 114

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             G  V     S    ++ LS+        R   AF+ +Q+GC + CT+C+VP  RG  I
Sbjct: 115 LHGFPVGGVYRSSAAGWDPLSL----RRTTRHTRAFVKVQDGCSRGCTYCIVPKLRGPSI 170

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR   +V+ E R L+++G  E+ L G ++  +R  GLD      +DL+ +LS ++GL R+
Sbjct: 171 SRPFQEVLSEVRSLVESGALEVVLTGVHLGDYRWDGLD-----LADLVRALSSVEGLGRI 225

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+ +  P  +S  L++A G     MP+LH+P+QSG D++L+ M R +   +Y +++ R R
Sbjct: 226 RFGSIEPFGLSQRLLEALGGSRSFMPHLHVPLQSGDDQVLRRMGRGYGGSDYVEMVRRAR 285

Query: 324 SVR-PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
            V   D+ +S+D +VGFPGE    F  T+ ++++    +   F YSPR GT   +     
Sbjct: 286 QVLGDDLHVSADVMVGFPGEDQVAFDNTLRVLEEARVGRLHVFPYSPRPGTAAYHWPRPQ 345

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
           D+ V+ ER+  L +  R     F    VG+ + VL+E+     G   G +     V    
Sbjct: 346 DDTVR-ERVQRLLEFGRRSLGDFARGFVGREVRVLVERVEDRIGD--GLAEPFLRVRFPY 402

Query: 443 KNHNIGDIIKV 453
           +    G ++ V
Sbjct: 403 EGP-PGRVVSV 412


>gi|86152551|ref|ZP_01070756.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Campylobacter
           jejuni subsp. jejuni HB93-13]
 gi|85843436|gb|EAQ60646.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Campylobacter
           jejuni subsp. jejuni HB93-13]
          Length = 439

 Score =  289 bits (741), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 108/439 (24%), Positives = 200/439 (45%), Gaps = 30/439 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + ++ S GC  N+ DS  M     +  YE  +    AD++++NTC   + A ++  + + 
Sbjct: 3   KLYLMSLGCNKNLVDSEIMLGRLSA--YELCDEPSKADVLIVNTCGFIDSAKKESINAIL 60

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +   +        D L+VV GC+ Q   EE+++  P V++  G   Y R+ E++   + 
Sbjct: 61  DLHEQRKK------DSLLVVTGCLMQRYREELMKELPEVDLFTGVGDYERIDEMI--LKK 112

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                ++ Y   +  +R+      +       AF+ I EGC++ C+FC +P  +G   SR
Sbjct: 113 TNLFSNSTYLQGENSKRIITGSNSH-------AFIKIAEGCNQKCSFCAIPSFKGKLKSR 165

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            +S ++ E + L+  G  + + + Q+ +++      GEK     L+  + +IKG+   R 
Sbjct: 166 EISSIIAELKDLVARGYKDFSFIAQDTSSYLFD--KGEKDGLIRLIDEVEKIKGIRAARI 223

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
              +P   S+ LIK     ++ + Y  +P+Q  SD +LK M R   +   +++++ ++S 
Sbjct: 224 LYLYPTSASEALIKRIIASEIFVNYFDMPLQHISDNMLKIMKRGANSTRLKEMLNLMKS- 282

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P+  + + FI+G PGE++ DF      V   G+ +   F YS    T   +M EQV   
Sbjct: 283 VPNSFLRTGFIIGHPGESEADFEELCAFVKDFGFDRISVFAYSKEEDTAAFDM-EQVSFK 341

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG----R-SPWLQSVVL 440
           V  +RL  ++K + E      +  VGQ   V+      E    +     R    +   +L
Sbjct: 342 VINKRLKIIEKIVDEVIEKSFEKEVGQKRLVVCTGESSEGEFFIAAKDLRWDREIDGEIL 401

Query: 441 ----NSKNHNIGDIIKVRI 455
                  N  +G I +  I
Sbjct: 402 INESECGNLEMGQIYECEI 420


>gi|85373609|ref|YP_457671.1| hypothetical protein ELI_03910 [Erythrobacter litoralis HTCC2594]
 gi|84786692|gb|ABC62874.1| hypothetical protein ELI_03910 [Erythrobacter litoralis HTCC2594]
          Length = 391

 Score =  289 bits (741), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 112/429 (26%), Positives = 184/429 (42%), Gaps = 50/429 (11%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V S GC++N+ +S ++  +  S+           D++V+N+C +  +A  +    + + R
Sbjct: 6   VISLGCRLNISESAQIRALLASED----------DVVVVNSCAVTSEAVRQTRQAIRKAR 55

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
                  K   +  ++V GC A  E +++    P V+ +V                    
Sbjct: 56  -------KARPNARLLVTGCAADIERDQLAA-MPEVDGLVANAAKLDPRAW--------- 98

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
                                    +   AF+ +Q GCD  CTFCV+P  RG   S S++
Sbjct: 99  --------------NVPAPQAPVTPQHTRAFVAVQNGCDHACTFCVIPQGRGKSQSLSIA 144

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
           +V+      +D G  E+ L G +V +W G  L G     S +   L     L RLR ++ 
Sbjct: 145 EVLRTVEHHLDRGAAEVVLTGVDVTSW-GHDLPGSPALGSLVRAVLDAFPTLTRLRMSSI 203

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
              ++ + L         +MP++HL +Q G D ILK M RRH+  +   ++ R ++ RP+
Sbjct: 204 DGIEVDETLFDLFAHEPRVMPHIHLSLQHGHDLILKRMKRRHSRADAFDLVFRFKAARPE 263

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           IAI +D I GFP ET++   A + ++ ++       F YSPR GTP + M  QVD     
Sbjct: 264 IAIGADLIAGFPTETEEHHAANLAIIRELDIVHGHIFPYSPRPGTPAARMP-QVDRPTIK 322

Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIG 448
            R   L+  + E +  +  A + Q   VL E+ G       G +P    V L      +G
Sbjct: 323 RRAAELRAAVAEVRDPWLRAQLDQPHSVLAERDG------CGYTPAYARVRLP-DQTPVG 375

Query: 449 DIIKVRITD 457
             + V  T 
Sbjct: 376 STVTVTPTH 384


>gi|332296067|ref|YP_004437990.1| Ribosomal protein S12 methylthiotransferase rimO [Thermodesulfobium
           narugense DSM 14796]
 gi|332179170|gb|AEE14859.1| Ribosomal protein S12 methylthiotransferase rimO [Thermodesulfobium
           narugense DSM 14796]
          Length = 437

 Score =  289 bits (741), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 117/458 (25%), Positives = 201/458 (43%), Gaps = 34/458 (7%)

Query: 23  VPQRFFV--KSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKV 80
           + +  ++   S GC  N  D   +   F +        ++ AD +++NTC    KA ++ 
Sbjct: 1   MIKTRYILPVSLGCPKNEVDLQYLLGKFETYNCFLTFDLNVADYVLINTCSFIRKAKQEA 60

Query: 81  YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTY--YRLPE 138
            S +  +   K           ++V GC+     E ++   P VN  + P       + E
Sbjct: 61  ISTILDLIENKK-----NFKYKIIVGGCLVSLYKESLIELFPEVNAFLEPGKSFGKEIFE 115

Query: 139 LLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRK--RGVTAFLTIQEGCDKFCTFCVVP 196
            L++             + + FE     D    R        +L I +GC + C++C++P
Sbjct: 116 YLDKNE-----------IYNNFENEFCNDNENRRFFIERPYEYLKIADGCSRKCSYCLIP 164

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256
             RG   S     ++++A+ L   G  EI L+ Q+V  + G      K +   LL  L  
Sbjct: 165 KIRGPYYSYDRKFLLEQAKDLALKGKREIILVAQDVT-YYGLD---RKDSLFKLLEGLEA 220

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           I+ +  +R    +P  ++  +IK   +   ++PY  +P+Q  S+++L+ M R   + ++ 
Sbjct: 221 IEEIKWIRLMYLYPDLLNKDIIKFVSESRKVLPYFDIPMQHASEKVLRYMRRNPDSEKFL 280

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
           ++ID IR   PD  I S FIVG PGE + +F   ++ ++KI    A  F YS    T   
Sbjct: 281 RLIDSIRENIPDSVIRSTFIVGHPGEDEKEFDKLVNFLEKIKLNWAGFFSYSREEDTLSY 340

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS---- 432
           +M  QV    K  RL  +Q   +   + +  + VG+  EVL+E    +    VGRS    
Sbjct: 341 SMDNQVKYVEKKNRLKIIQSIQQNITLKWRQSLVGKSFEVLVENDLNKYN--VGRSFMEA 398

Query: 433 PWLQS-VVLNSKN-HNIGDIIKVRITDVKISTLYGELV 468
           P + S +         IGD +++ IT  K   L GEL+
Sbjct: 399 PDIDSFIRFRGSEKVEIGDFVRILITKNKGFKLEGELI 436


>gi|218884393|ref|YP_002428775.1| RNA modification enzyme, MiaB family [Desulfurococcus kamchatkensis
           1221n]
 gi|218766009|gb|ACL11408.1| RNA modification enzyme, MiaB family [Desulfurococcus kamchatkensis
           1221n]
          Length = 432

 Score =  289 bits (740), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 122/450 (27%), Positives = 214/450 (47%), Gaps = 29/450 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R ++++YGC +N  D   M +    +G+E VNS++DAD +++NTC +R       Y  + 
Sbjct: 2   RVYIETYGCALNKSDEALMVENILREGHELVNSIEDADTLIINTCIVRLDTE---YHMVK 58

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           RIR L     + G  L  +VAGC+A+AE   +L+ +P  ++V  PQ    + E+L   + 
Sbjct: 59  RIRELYEVASRTGKKL--IVAGCMAKAEPYTVLKIAPEASLV-SPQNSALITEVL---KT 112

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
             +V+  D   E     + + D          A + IQEGC   C+FC+  + R I +S 
Sbjct: 113 RGKVILIDGLRERDRIGIHVEDR--------IAPIPIQEGCLSNCSFCITKHARRILVSH 164

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            +  VV    + + NG  EI L G ++    G  L   +     +      + G   +R 
Sbjct: 165 GIDAVVKAVERAVRNGAVEIQLTGMDLGT-YGLDLYKTRKLPELVKEVSRRVSGEYMIRI 223

Query: 266 TTSHPRDMSD---CLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
              +P  +      LI A  +   +  +LH+P+QSGS+++L  M R ++  EY +I++  
Sbjct: 224 GMINPEHLRYILDDLIDAINESSKVYRFLHIPLQSGSNKVLSVMRRNYSVEEYIEIVNEA 283

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           +S  P ++I++D IVG P E ++DF  T+ ++ ++ + +     YS R  T  +++  QV
Sbjct: 284 KSRIPGVSIATDIIVGHPMEDEEDFNETLKVIRELEFERVHLAGYSIRPLTYSASLP-QV 342

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
              VK ER+L   + + E  +      VG+ +E    +H       + R      VV+  
Sbjct: 343 PTRVKKERVLRALQVIEEVGLKIRLKYVGKEVECFTTEHS---NTWICRLENYIPVVVTG 399

Query: 443 KNHNI----GDIIKVRITDVKISTLYGELV 468
           K+ +     G  I+V + +     L G  +
Sbjct: 400 KSGDPALDYGRWIRVLVDNATFFDLRGRFL 429


>gi|294900097|ref|XP_002776898.1| 2-methylthioadenine synthetase, putative [Perkinsus marinus ATCC
           50983]
 gi|239884099|gb|EER08714.1| 2-methylthioadenine synthetase, putative [Perkinsus marinus ATCC
           50983]
          Length = 554

 Score =  289 bits (740), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 99/440 (22%), Positives = 201/440 (45%), Gaps = 25/440 (5%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
             Q+ F K++GC  N  DS  M  +    GY+ V  + DAD++VLN+C ++  + + + +
Sbjct: 122 AGQKIFFKTFGCSHNTSDSEYMMGLLSRYGYDFVGKIADADVVVLNSCTVKNPSEDALAT 181

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +                L  VV GCV QA+ +    R+     +VG     R+ E++E 
Sbjct: 182 LVKAAEA---------EGLPTVVCGCVPQADRKSRALRNAS---LVGTSQIDRIVEVVEE 229

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
              G RV         +   L  +     R+  +   + +  GC   C++C   Y RG  
Sbjct: 230 TLRGNRVSLLQSKKLPELRELPKI-----RRNPLVEIVAVNTGCLGKCSYCKTKYARGSL 284

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG--- 259
            S S   ++   R  +  GV +I L  +++ A+   GLD        L   + E++    
Sbjct: 285 GSYSKEDIIARVRTALAEGVQQIWLTSEDLGAY---GLDIGTNVAELLREIVGELEKYPD 341

Query: 260 -LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
            ++RL  T           +        +  ++H+P+QSGS+ +L+ M R +T  ++ ++
Sbjct: 342 SMMRLGMTNPPYILQHAEEVAKILTHPQVFEFIHIPIQSGSNDVLRHMIREYTVEDFDRL 401

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           +  +R+  P++ +++D I GFP E++++ R T++L+ +  +      ++  R GT  + +
Sbjct: 402 VGILRARVPNLTVATDVICGFPTESEENHRETLELIKRHRFPVINISQFYARPGTAAARI 461

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWL-QS 437
             ++   V  ER   +        ++ +   +G+++EV  ++  + +G+ VG +    ++
Sbjct: 462 RPRLPGKVIKERSTEVTNLFMSYSLTDSLYDIGEVVEVWYDEVDEGRGQTVGHTKRYTKA 521

Query: 438 VVLNSKNHNIGDIIKVRITD 457
           V+L      +G  ++ R+ D
Sbjct: 522 VLLGIHKGVLGKKMRARVED 541


>gi|58696768|ref|ZP_00372305.1| MiaB-like tRNA modifying enzyme [Wolbachia endosymbiont of
           Drosophila simulans]
 gi|58537042|gb|EAL60178.1| MiaB-like tRNA modifying enzyme [Wolbachia endosymbiont of
           Drosophila simulans]
          Length = 375

 Score =  289 bits (740), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 118/399 (29%), Positives = 196/399 (49%), Gaps = 28/399 (7%)

Query: 69  TCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVV 128
           +C +  +A  +V   + +I        K   +  ++V GC  Q +  E+    P V+ V+
Sbjct: 3   SCAVTNEAERQVKQKIRKI-------YKNDPNKEIIVVGCAVQLDP-EVYSSIPGVSKVL 54

Query: 129 GPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
           G Q   +    L          D    V D      +++G  ++ R   AF+ IQ GC+ 
Sbjct: 55  GNQDKLKAENYLLN--------DDKILVSDNQVEPVLINGFEDKSR---AFIEIQNGCNH 103

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS 248
            CTFC +   RG   S  ++ ++++ R  ++NG  E+   G ++  + G  L G+    S
Sbjct: 104 SCTFCSITEARGNNRSVPINSIIEQIRIFVENGYQEVVFTGVDITDF-GTDLLGKPSLGS 162

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
            +   L +I  L RLR ++    ++ D L+    +   LMP+LHL +QSG++ ILK M R
Sbjct: 163 MIRRVLKDIPELKRLRLSSIDVAEVDDELMDLIANESRLMPHLHLSLQSGNNLILKRMKR 222

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
           RH   +  +   +++S+RP+IA  +D I GFP ETD+ F+ T+DL+ K       +F YS
Sbjct: 223 RHNREQVIEFCHKMKSLRPNIAFGADIIAGFPTETDEMFQDTVDLLKKTNIVYLHAFPYS 282

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL 428
            R  TP + M  QV ENV+ ER+  L++  +E   SF  + +     VL+E++       
Sbjct: 283 ERKNTPAARMP-QVPENVRKERVKNLREVNKEIMSSFCQSLINTKQSVLVEQNN------ 335

Query: 429 VGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
           VGR+     + L SK      I+KV +  V+ + L G +
Sbjct: 336 VGRAENFALIKLESKAQAK-SIVKVNVKGVENNYLIGNI 373


>gi|75676959|ref|YP_319380.1| 2-methylthioadenine synthetase [Nitrobacter winogradskyi Nb-255]
 gi|74421829|gb|ABA06028.1| 2-methylthioadenine synthetase [Nitrobacter winogradskyi Nb-255]
          Length = 422

 Score =  289 bits (740), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 126/451 (27%), Positives = 193/451 (42%), Gaps = 43/451 (9%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
             V ++GC++N ++S  +     + G E        D++++N+C +  +A  +    + R
Sbjct: 3   VDVITFGCRLNAFESEVIRRNAEAAGLE--------DVVIVNSCAVTNEAVAQARQSIRR 54

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR----------- 135
           ++       +   D  +VV GC AQ E   +  +   V+ V+G     R           
Sbjct: 55  LK-------RARPDARIVVTGCAAQIEPA-MFAQMAEVDRVIGNDEKMRGEAWRAARAAF 106

Query: 136 -LPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCV 194
             P++   A     V D     E     +    GG  R     AF+ +Q GCD  CTFC+
Sbjct: 107 AAPDVTIAAEKKIAVADIMAVTEMAPHLVDGFQGGLPR-----AFVQVQNGCDHRCTFCI 161

Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL 254
           +P+ RG   S  +  VVD+ R L + G  EI L G ++ +  G  L G       +   L
Sbjct: 162 IPFGRGNSRSMPMDAVVDQVRVLTETGYAEIVLTGVDLTS-YGADLPGGPRLGGLVRQIL 220

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
            ++  + RLR ++    ++   L+ A  + + LMP+LHL +QSG D ILK M RRH   +
Sbjct: 221 RQVPEMRRLRISSIDSIEVDRDLMDAIANEERLMPHLHLSLQSGDDMILKRMKRRHARRD 280

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
                 ++R +RPD A  +D I GFP ETDD F  ++DLV +        F YS R GTP
Sbjct: 281 AIDFCAQVRRLRPDTAFGADIIAGFPTETDDMFARSLDLVAECDLTFLHVFPYSSRPGTP 340

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPW 434
            + M   V   V   R   L+            A VG    VLIE          GR+  
Sbjct: 341 AARMPP-VAAEVVRNRAGRLRAAAGAALRRRLAAEVGATRRVLIE------SGTQGRTEH 393

Query: 435 LQSVVLNSKNHNIGDIIKVRITDVKISTLYG 465
              V +       G +  VR+     + L  
Sbjct: 394 FVPVAMTGDT--PGAVRTVRVAGHDDTRLLA 422


>gi|307354819|ref|YP_003895870.1| MiaB-like tRNA modifying enzyme [Methanoplanus petrolearius DSM
           11571]
 gi|307158052|gb|ADN37432.1| MiaB-like tRNA modifying enzyme [Methanoplanus petrolearius DSM
           11571]
          Length = 404

 Score =  289 bits (739), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 105/447 (23%), Positives = 200/447 (44%), Gaps = 53/447 (11%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++  +++YGC  N  D+ ++  +   QG   V    +A+ +++NTC +  +    +   +
Sbjct: 7   KKIHLETYGCTFNFADTEKIVRVAEKQGCSIVP-PGEAEAVIINTCTVVAQTERAMLRVI 65

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
                          D  + V GC+A  + + I    P   +++ P+   R PE +    
Sbjct: 66  AEF-----------PDKEIYVTGCMAVVQPDLIYGVRPDARLIL-PEDLNRCPETIG--- 110

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
                                     +   G T  +    GC   C +C+    RG   S
Sbjct: 111 --------------------------SLVDGSTGIVQTARGCVSRCAYCITRSARGRLRS 144

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
               ++++E  +L+  G  EI L GQ+++A  G        +  DLL  ++ ++G   +R
Sbjct: 145 FPEDKIIEEIERLVSAGAVEIQLTGQDLSA-YGMDT---GSSLPDLLNRINSLEGEFMVR 200

Query: 265 YTTSHP---RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
               +P     ++D L  A    + +  + HLPVQSGSD++L  M R +   ++R ++  
Sbjct: 201 VGMMNPSTAIPLTDELSDAFL-GEKIFSFAHLPVQSGSDKVLSDMKRGYQVQDFRNLVAE 259

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R   P I IS+DFIVG+P ET++DF  T+ L+++I   +    ++S R GT  + + + 
Sbjct: 260 LRKKDPGIRISTDFIVGYPTETEEDFLKTLALLEEIRPTKVNITRFSAREGTDAAKLKD- 318

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           + + +K ER   L         S N++ +G+ ++V++ +  K  G  + R     ++V+ 
Sbjct: 319 IPDWIKKERSRALTIAANRLYDSVNESFIGKDLDVIVTER-KRAGSCIARDKSYNNIVIE 377

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
            +  + G   +VRI   +   L GE +
Sbjct: 378 -EELDAGTRCRVRIVSHRRHYLIGERI 403


>gi|257063746|ref|YP_003143418.1| MiaB-like tRNA modifying enzyme [Slackia heliotrinireducens DSM
           20476]
 gi|256791399|gb|ACV22069.1| MiaB-like tRNA modifying enzyme [Slackia heliotrinireducens DSM
           20476]
          Length = 409

 Score =  289 bits (739), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 125/428 (29%), Positives = 191/428 (44%), Gaps = 27/428 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           RF V + GC++N  +S        + G E V  ++DADL+++NTC +  +A +K    + 
Sbjct: 5   RFHVVNLGCRVNRVESDSFAASLVAHGGESVP-VEDADLVIVNTCTVTGEAEKKTRKAVR 63

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R+       ++E     VVV GC A  + +        V VV        +   +  A  
Sbjct: 64  RV-------LRENASGTVVVTGCAAAIDPDTYGNMDSRVVVV----PKGSMAAYVSHAVS 112

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G+  V                  G +        + +Q+GC+  CTFC+V   RG   SR
Sbjct: 113 GESPVAVAEGGAVGSLFGDEFRMGEDF--PTRVGIKVQDGCNNACTFCIVHVARGRAWSR 170

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
               VV EA +    GV EI L G N+ A+R +  D        LL  L E     R R 
Sbjct: 171 PYKDVVAEAGEYARRGVREIVLTGINLGAYRTEDAD-----LVRLLDGLLEAAPNTRFRL 225

Query: 266 TTSHPRDMSDCLIKAHGDLD-VLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           ++  P  +SD  I      D  +  +LHLP+QSGS ++LK M R +TA ++  ++DR+  
Sbjct: 226 SSVEPHTLSDDFIGLMAASDGRICRHLHLPLQSGSTKVLKEMARPYTAQDFMGLVDRMYE 285

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             P +++S+D IVGFPGET+ DF+ T D+     +++   F+YS R GTP +   +Q+  
Sbjct: 286 AVPSLSLSTDVIVGFPGETERDFQDTCDVARACRFSKMHIFRYSMRAGTPAALRSDQISP 345

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
            VKAER   L     E          G     L+E  G      +  +    SV      
Sbjct: 346 EVKAERAAKLDAIEHELCAQDLARRKGTCELALVETDG------IATTESYHSVAAP-VQ 398

Query: 445 HNIGDIIK 452
             +GD++ 
Sbjct: 399 SQVGDLVP 406


>gi|313682137|ref|YP_004059875.1| miab-like tRNA modifying enzyme [Sulfuricurvum kujiense DSM 16994]
 gi|313154997|gb|ADR33675.1| MiaB-like tRNA modifying enzyme [Sulfuricurvum kujiense DSM 16994]
          Length = 415

 Score =  289 bits (739), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 112/428 (26%), Positives = 204/428 (47%), Gaps = 30/428 (7%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           +  + + K++GC+ NV+DS  M        YE      +AD++++N+C +   A   V  
Sbjct: 1   MKPKVYFKTFGCRTNVFDSQVMMSALSD--YEVTEIEGEADIVIVNSCTVTNGADVSVRG 58

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
           ++ ++               + + GC A  +GE +   +  +  V GP    ++  L+ +
Sbjct: 59  YINQMDKQGKK---------LFLTGCGAHTKGESLFG-AGKIQGVFGPSEKMKINTLISQ 108

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
                 + D +Y  +      +IVD    + R   AF+ IQEGC+  C++C++P+ RG  
Sbjct: 109 ESRFYEIGDLNYIDD------AIVDEFVGKSR---AFIKIQEGCNFRCSYCIIPFVRGDA 159

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            S   ++++++ ++L  NG  E  L G NV +  G+   GE    ++L+  +S I+G+ R
Sbjct: 160 RSMDEAKILEQIQRLASNGFGEFVLTGTNVGS-YGQ---GEGRNIAELMKKMSLIRGVRR 215

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R  +  P  +++   +       L  +LH+ +Q  SD +L+ MNRR+      ++   +
Sbjct: 216 IRVGSLEPIQINESF-REILSEPWLERHLHIAIQHSSDEMLRLMNRRNRHKSDEELFGML 274

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
            S     A+ +DFIVG PGE+D  +R  M+ +  +       F YS R GTP ++M  +V
Sbjct: 275 HSK--GFALGTDFIVGHPGESDAIWREAMENIRSLHLTHIHPFTYSKRDGTPSASMKPEV 332

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
           +  V ++R+  L   +     +F  A     +EVLIE    E  + +G   +   VV+ S
Sbjct: 333 NGAVSSQRMAELNALIESNNYTFRKAMKAVPLEVLIE--SGEDNRYIGYDQFYNKVVIES 390

Query: 443 KNHNIGDI 450
                GD 
Sbjct: 391 NEDISGDW 398


>gi|254797123|ref|YP_003081961.1| hypothetical protein NRI_0751 [Neorickettsia risticii str.
           Illinois]
 gi|254590369|gb|ACT69731.1| conserved hypothetical protein [Neorickettsia risticii str.
           Illinois]
          Length = 416

 Score =  289 bits (739), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 130/444 (29%), Positives = 210/444 (47%), Gaps = 30/444 (6%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
             V ++GC++N Y+S  ++++        V   D  + I++NTC +  +A  KV   + +
Sbjct: 2   VKVITFGCRLNFYESDLIKNL--------VGIRDSRECIIINTCAVTNEAVRKVKQKIRK 53

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
                    KE  +  ++V GC  Q +        P V  V+G     ++      +   
Sbjct: 54  CH-------KEEPEKKIIVVGCGPQLDPHA-YSHMPGVFKVLGNIEKLKVESY--TSEQK 103

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
             V D  ++ E  F    +      RKR   AFL IQ GCD  CTFC +   RG   S  
Sbjct: 104 IAVADITHAPETAFSGTMMPVVSTVRKR---AFLEIQNGCDHDCTFCAITLARGKNRSSD 160

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
             ++V E RK++  G+ E+ L G ++    GK L G+      L   L+++  L RLR +
Sbjct: 161 AIKIVSEVRKMVAFGINEVVLTGVDIT-DYGKDLFGKPALVYLLKKILNDVPELKRLRLS 219

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
           +    ++SD  I+       LMP+LHL +QSG   ILK M RRHT  +  +   +I +VR
Sbjct: 220 SVDVSELSDDFIELFATEARLMPHLHLSIQSGDSIILKRMKRRHTPEQVVEFHSKILAVR 279

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           P+    +D IVGFP E+++ F  + +L+ ++       F +SP+ GT  + M  QV+  V
Sbjct: 280 PETGFGADIIVGFPTESEEMFHNSYELIKRLAIPYLHVFPFSPKKGTKAALMP-QVEGVV 338

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHN 446
           K  R   L +  +E    FN   VG+I  +++E+        VGRS     V L+    +
Sbjct: 339 KKRRARKLIELGKENLQIFNTVQVGRIHNLVLERDD------VGRSENFCLVKLDRAVSD 392

Query: 447 IGDIIKVRITDVKIST-LYGELVV 469
              II+V+IT    +  L G+++ 
Sbjct: 393 DTGIIRVKITGCSDAEMLSGQIIA 416


>gi|307110241|gb|EFN58477.1| hypothetical protein CHLNCDRAFT_19538 [Chlorella variabilis]
          Length = 499

 Score =  288 bits (738), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 120/463 (25%), Positives = 204/463 (44%), Gaps = 39/463 (8%)

Query: 21  CIVP--QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDD--ADLIVLNTCHIREKA 76
            +VP  QR +VK++GC  N  DS  M       G++ V+  D   ADL +LNTC ++  +
Sbjct: 61  SVVPGTQRIWVKTFGCSHNSSDSEYMMGQLQEYGFKLVDEADSAAADLWLLNTCTVKSPS 120

Query: 77  AEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL 136
              + + L R R L  +         ++VAGCV Q +      R      ++G     R+
Sbjct: 121 QSAMDTLLRRGRRLGKA---------LLVAGCVPQGDRRTAELRG---LSLLGVTQIDRV 168

Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
            E +E    G  V             L  +D    R+      L +  GC   CT+C   
Sbjct: 169 VEAVEETLKGHTVQLLAKKA------LPRLDLPKVRRNRHIEILPLSTGCLGACTYCKTK 222

Query: 197 YTRGIEISRSLSQVVDE-ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
           + RG   S   +++V   A    D  V EI L  ++  A  G+ +     +   LL  L 
Sbjct: 223 HARGQLGSYDPAELVRRAAAAAADPQVREIWLSSEDTGA-YGRDI---GTSLPALLRELV 278

Query: 256 EI---KGLVRLRYTTSHPRDMSDCLIK--AHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
           E+    G   LR   ++P  + + L +  A    D +  YLH+PVQSGSD +L +M R +
Sbjct: 279 EVLPPDGRCMLRVGMTNPPFILEHLAEVGAILRDDRVFSYLHVPVQSGSDAVLTAMRREY 338

Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370
           +A ++R++ D + +  P + +++D I GFPGET++D  AT+ L+DK  +      ++ PR
Sbjct: 339 SAAQFRRVCDTLLAAVPGLELATDIICGFPGETEEDHGATLALLDKYRFPHCHISQFYPR 398

Query: 371 LGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG 430
            GTP + M  +V   V  +R   +   +     S++   VG      +     +    V 
Sbjct: 399 PGTPAARMR-RVPTAVVKQRSREVTAAVESWCGSYS-GLVGATQRCCVVDTAADGVHAVA 456

Query: 431 RSPWLQSVVL-----NSKNHNIGDIIKVRITDVKISTLYGELV 468
            +     V++     +     +G +++ R+      ++  E+V
Sbjct: 457 HNKAYTQVLVPAEAPDGSGSLLGCVVEARVVSASRWSVKAEVV 499


>gi|315124891|ref|YP_004066895.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Campylobacter
           jejuni subsp. jejuni ICDCCJ07001]
 gi|315018613|gb|ADT66706.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Campylobacter
           jejuni subsp. jejuni ICDCCJ07001]
          Length = 439

 Score =  288 bits (738), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 109/439 (24%), Positives = 201/439 (45%), Gaps = 30/439 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + ++ S GC  N+ DS  M     +  YE  +    AD++++NTC   + A ++  + + 
Sbjct: 3   KLYLMSLGCNKNLVDSEIMLGRLSA--YELCDEPSKADVLIVNTCGFIDSAKKESINAIL 60

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +   +        D L+VV GC+ Q   EE+++  P V++  G   Y R+ E++   + 
Sbjct: 61  DLHEQRKK------DSLLVVTGCLMQRYREELMKELPEVDLFTGVGDYERIDEMI--LKK 112

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                ++ Y   +  +R+      +       AF+ I EGC++ C+FC +P  +G   SR
Sbjct: 113 TNLFSNSTYLQSENSKRIITGSNSH-------AFIKIAEGCNQKCSFCAIPSFKGKLKSR 165

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            +S ++ E + L+  G  + + + Q+ +++      GEK     L+  + +IKG+   R 
Sbjct: 166 EISSIIAELKDLVARGYKDFSFIAQDTSSYLFD--KGEKDGLIRLIDEVEKIKGIRAARI 223

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
              +P   S+ LIK     ++ + Y  +P+Q  SD +LK M R   +   +++++ ++S 
Sbjct: 224 LYLYPTSASEALIKRIIASEIFVNYFDMPLQHISDNMLKIMKRGANSTRLKEMLNLMKST 283

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P+  + + FIVG PGE++ DF    + V   G+ +   F YS    T   +M EQV   
Sbjct: 284 -PNSFLRTGFIVGHPGESEADFEELCEFVKDFGFDRVSVFAYSKEEDTAVFDM-EQVPFK 341

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG----R-SPWLQSVVL 440
           V  +RL  ++K + E      +  VGQ   V+      E    +     R    +   +L
Sbjct: 342 VINKRLKIIEKIVDEVIEKSFEKEVGQKRLVVCTGESSEGEFFIAAKDLRWDREIDGEIL 401

Query: 441 ----NSKNHNIGDIIKVRI 455
                  N  +G I +  I
Sbjct: 402 INESECGNLEMGQIYECEI 420


>gi|242280283|ref|YP_002992412.1| MiaB-like tRNA modifying enzyme [Desulfovibrio salexigens DSM 2638]
 gi|242123177|gb|ACS80873.1| MiaB-like tRNA modifying enzyme [Desulfovibrio salexigens DSM 2638]
          Length = 429

 Score =  288 bits (738), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 117/449 (26%), Positives = 212/449 (47%), Gaps = 38/449 (8%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++F++ + GC++N Y+S  + + +   GYE+  +  +A  I++N+C + + A       L
Sbjct: 6   KKFWITTLGCKINQYESESVRERWLRMGYEQAENDAEAHEIIINSCAVTQAA-------L 58

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             +R       +   +  +++AGC AQ   +E+     + +V+       R  ELL    
Sbjct: 59  RDLRQTVRGINRRNPEGKIIIAGCAAQVFAKELAELPGVADVI----PQERKFELL---- 110

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
              ++ D   S +D           Y R R   A + +Q+GC   CT+C+VP TRG  +S
Sbjct: 111 ---KLEDGPESTDDTTIFQPFEIDDYERSR---AVVKVQDGCSHRCTYCIVPITRGPSVS 164

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-----SEIKG 259
           R++  V+ E  +L+  G  E+ + G N+ +  G+  + EK  F DL+  +      E  G
Sbjct: 165 RAVDDVLKEISRLLAAGFREMIISGINL-SHYGREFE-EKIDFWDLMERIEDEFGQEWGG 222

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA-YEYRQI 318
             RLR ++  P  + +  ++      ++ P LHL +QSG  ++LK M R H    +    
Sbjct: 223 RARLRISSLEPGQLKERALEIFAKSKLICPQLHLSLQSGDRQVLKRMGRGHYKPEDVLVF 282

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           +D+++ V P   + +D + GFPGET+++F  T++   K+  + A  F YS R GT  ++M
Sbjct: 283 LDKLKEVWPVFGLGADILTGFPGETEEEFNNTLEFCRKLPLSYAHVFPYSIRPGTAAASM 342

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIE---VLIEKHGKEKGKLVGRSPWL 435
             Q+D   K ER   L++ + E++  F        ++   VL     K KG     S  +
Sbjct: 343 KGQLDGPTKKERGRILRELVEEKKQEFLQKI--SEMDSLKVLF--QNKNKGICEFYSTCI 398

Query: 436 QSVVLNSKNHNIGDIIKVRITDVKISTLY 464
                 ++     D+++V     K  +L 
Sbjct: 399 LEEGFENEVPR--DLVEVIPVAAKDGSLM 425


>gi|237750091|ref|ZP_04580571.1| conserved hypothetical protein [Helicobacter bilis ATCC 43879]
 gi|229374278|gb|EEO24669.1| conserved hypothetical protein [Helicobacter bilis ATCC 43879]
          Length = 431

 Score =  288 bits (738), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 95/449 (21%), Positives = 187/449 (41%), Gaps = 30/449 (6%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++  V S GC  N+ DS  M        YE    +  AD+I++NTC   E A ++    +
Sbjct: 2   KKLHVVSLGCSKNLVDSEIMLGKLQD--YEITQDLGSADVIIINTCGFIEAAKKESLGHI 59

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
                 +          L+V +GC+     +EI    P ++++ G   Y ++  +++   
Sbjct: 60  FEALEGRKK------GALLVASGCLVARYAKEIKEMIPEIDILTGVSDYDKIDTMIKD-- 111

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
             K+ V  D     K E+  +          + A++ I EGC++ C+FC +P  +G   S
Sbjct: 112 --KKGVMNDSVYLQKDEKRVVT------GSQIHAYVKISEGCNQQCSFCAIPNFKGKLQS 163

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           RS+  +++E   L   G  +I+ + Q+ +++      G       L+ ++     +   R
Sbjct: 164 RSIDSILNEVESLAKQGYKDISFIAQDTSSFLRD--KGVNDGLLKLINAIDAQGAIKSAR 221

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
               +P      L+    +  +   Y  +P+Q  +  +L  M R H   +  ++++ ++ 
Sbjct: 222 ILYLYPSSTDIELLDGIANSQIFQNYYDMPIQHSAKSVLSHMQRSH--KDMIKLLEYMKK 279

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             P+  + S  IVG+P ET+DDF A  + ++   + +   F+YS    T    + E +  
Sbjct: 280 -IPNSFVRSSVIVGYPTETEDDFNALCEFLESFRFDRLNVFEYSKEEDTKAGKLEE-IPR 337

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGR----SPWLQSVV 439
            ++ +R+  ++K L +       A +   I  +IE            R    +  +   +
Sbjct: 338 KIRTQRINKVKKILAKIDKQHFSAMLDTHIPCIIEGKSMLSPHFYSARDMRWAKDIDGEI 397

Query: 440 LNSKNHNIG-DIIKVRITDVKISTLYGEL 467
           L +     G     V IT  K + L G +
Sbjct: 398 LINDGEYSGPGYYNVHITQTKDNILIGSI 426


>gi|212703826|ref|ZP_03311954.1| hypothetical protein DESPIG_01874 [Desulfovibrio piger ATCC 29098]
 gi|212672794|gb|EEB33277.1| hypothetical protein DESPIG_01874 [Desulfovibrio piger ATCC 29098]
          Length = 416

 Score =  288 bits (738), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 105/434 (24%), Positives = 180/434 (41%), Gaps = 29/434 (6%)

Query: 40  DSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGG 99
           D+  +           V  M  A L+ +NTC   E A  +    +  I +      +   
Sbjct: 2   DTEHLLGSL-GMPVHSVEHMGRARLVFINTCGFIEPAVRES---IRSILDAVERLGRCKR 57

Query: 100 DLLVVVAGCVAQAEG-EEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVED 158
             L+ VAGC+    G +++    P V++ +        P ++  A               
Sbjct: 58  RPLLAVAGCMVGRYGVKDLAADLPEVDLWLPTGELENWPVMVREALG------------- 104

Query: 159 KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLI 218
                    G         A+L + EGC   C FC +P  RG   S   + + +EAR L+
Sbjct: 105 -LPAAPAAPGRLLSTGPSYAWLKVGEGCRHKCAFCTIPSIRGPLRSVPAADLREEARGLL 163

Query: 219 DNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLI 278
             GV E+ L+ Q++ +W G   D    +   LL  L  +  L  LR    +P  ++  ++
Sbjct: 164 AGGVRELVLVAQDLTSW-GSDFDT-PQSLPHLLDELLPLDRLTWLRLLYLYPSGVTPEML 221

Query: 279 KAHGDL-DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIV 337
           +   +    L+PY  +P+Q     +L  M R   A + R+++DR+R   P+ A+ + FIV
Sbjct: 222 RYMREAGPQLLPYFDIPLQHAHPEVLTRMGRPF-ANDPRRVVDRVREALPEAALRTTFIV 280

Query: 338 GFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKK 397
           G+PGET++ F+     V++  +     F Y    GTP + M +QV   V+ ER   L + 
Sbjct: 281 GYPGETEEHFQTLCRFVEETRFRHLGVFAYQAEEGTPAAAMPDQVPMEVREERRATLMEI 340

Query: 398 LREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGR----SPWLQSV-VLNSKNHNIGDII 451
             E         VGQ + VL++  H +  G  VGR    +P +  +  ++      G ++
Sbjct: 341 QAEISEQQLQESVGQTMPVLVDAPHDEWPGLHVGRVWFQAPEVDGITYVSGLGVAPGALV 400

Query: 452 KVRITDVKISTLYG 465
           +  I +     L  
Sbjct: 401 QGDIVESSTYDLTA 414


>gi|148261480|ref|YP_001235607.1| MiaB-like tRNA modifying enzyme [Acidiphilium cryptum JF-5]
 gi|146403161|gb|ABQ31688.1| MiaB-like tRNA modifying enzyme [Acidiphilium cryptum JF-5]
          Length = 411

 Score =  288 bits (738), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 117/432 (27%), Positives = 191/432 (44%), Gaps = 33/432 (7%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           + ++GC++N ++S  M     + G          D +++NTC +  +A  +    + R  
Sbjct: 5   ILTFGCRLNAFESEVMRGHAEAAGL--------GDAVIVNTCAVTAEAERQARQAIRRAH 56

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
                  +      ++V GC AQ +          V  V+G        +L   A   + 
Sbjct: 57  -------RADPAAKIIVTGCAAQIDPAA-WSSIEGVARVLGNAE-----KLTPEAWRSEA 103

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
            V     ++ +     +++G   R R   AF+ +Q+GCD  CTFC++PY RG   S  L 
Sbjct: 104 PVLVADIMQLRQTAAHLIEGFGTRAR---AFIEVQQGCDHRCTFCIIPYGRGPSRSIPLG 160

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
            VV++ R L+ NG  E+ L G ++ +  G  L G           L+ +  L RLR ++ 
Sbjct: 161 AVVEQVRTLVANGYNEVVLTGVDLTS-YGADLPGAPKLGQLCRRLLAAVPDLPRLRLSSI 219

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
            P ++ D L +       LMP+LHL VQ+GSD ILK M RRH  +   +   R R++RPD
Sbjct: 220 DPAEIDDDLWRLLESEPRLMPHLHLSVQAGSDLILKRMKRRHLRHHVIEAAARARALRPD 279

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           IA+ +D I GFP ET+  F  T+ LVD  G      F +S R GTP + +   +    + 
Sbjct: 280 IALGADLIAGFPTETEAHFAETLALVDDAGLDYLHVFPFSARKGTPAARIP-ALPMAERR 338

Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIG 448
            R   L++    +  +   A  G  +  L E       +  G +     +  ++     G
Sbjct: 339 ARAARLREAGARRAEARFRAMTGTTVTALAE------TETAGHTETFAPIRFSAP-VTPG 391

Query: 449 DIIKVRITDVKI 460
            ++  RIT    
Sbjct: 392 ALVTARITGADA 403


>gi|283956827|ref|ZP_06374301.1| MiaB-like tRNA modifying enzyme YliG [Campylobacter jejuni subsp.
           jejuni 1336]
 gi|283791688|gb|EFC30483.1| MiaB-like tRNA modifying enzyme YliG [Campylobacter jejuni subsp.
           jejuni 1336]
          Length = 439

 Score =  288 bits (737), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 107/439 (24%), Positives = 199/439 (45%), Gaps = 30/439 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + ++ S GC  N+ DS  M     +  YE  +    AD++++NTC   + A ++  + + 
Sbjct: 3   KLYLMSLGCNKNLVDSEIMLGRLST--YELCDEPSKADVLIVNTCGFIDSAKKESINAIL 60

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +   +        D L+VV GC+ Q   EE+++  P V++  G   Y R+ E++   + 
Sbjct: 61  DLHEQRKK------DSLLVVTGCLMQRYREELMKELPEVDLFTGVGDYERIDEMI--LKK 112

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                ++ Y   +  +R+              AF+ I EGC++ C+FC +P  +G   SR
Sbjct: 113 TNLFSNSTYLQSENSKRI-------ITGSNFHAFIKIAEGCNQKCSFCAIPSFKGKLKSR 165

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            ++ ++ E + L+  G  + + + Q+ +++       EK     L+  + +IKG+   R 
Sbjct: 166 EINSIIAELKDLVARGYKDFSFIAQDTSSYLFD--KSEKDGLIRLIDEVEKIKGIRAARI 223

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
              +P   S+ LIK     ++ + Y  +P+Q  SD +LK M R   +   +++++ ++S 
Sbjct: 224 LYLYPTSASEALIKRIIASEIFVNYFDMPLQHISDNMLKIMKRGANSTRLKEMLNLMKSA 283

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P+  + + FIVG PGE++ DF    + V   G+ +   F YS    T   +M EQV   
Sbjct: 284 -PNSFLRTGFIVGHPGESEADFEELCEFVKDFGFDRVSVFAYSKEEDTAAFDM-EQVSFK 341

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG----R-SPWLQSVVL 440
           V  +RL  ++K + E      +  VGQ   V+      E    +     R    +   +L
Sbjct: 342 VINKRLKIIEKIVDEVIEKSFEKEVGQKRLVVCTGESSEGEFFIAAKDLRWDREIDGEIL 401

Query: 441 ----NSKNHNIGDIIKVRI 455
                  N  +G I +  I
Sbjct: 402 INESECGNLEMGQIYECEI 420


>gi|289805405|ref|ZP_06536034.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella
           enterica subsp. enterica serovar Typhi str. AG3]
          Length = 261

 Score =  288 bits (737), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 127/261 (48%), Positives = 178/261 (68%), Gaps = 5/261 (1%)

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
           R VD  +   +KF+RL        R  G TAF++I EGC+K+CT+CVVPYTRG E+SR  
Sbjct: 6   RSVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTYCVVPYTRGEEVSRPS 60

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
             ++ E  +L   GV E+ LLGQNVNAWRG+  DG   TF+DLL  ++ I G+ R+R+TT
Sbjct: 61  DDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTTGTFADLLRLVAAIDGIDRIRFTT 120

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
           SHP + +D +I+ + D   L+ +LHLPVQSGSDR+L  M R HTA EY+ II ++R+ RP
Sbjct: 121 SHPIEFTDDIIEVYRDTPELVSFLHLPVQSGSDRVLNLMGRTHTALEYKAIIRKLRAARP 180

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
           DI ISSDFIVGFPGET DDF  TM L+  + +  ++SF +S R GTP ++M++ V E  K
Sbjct: 181 DIQISSDFIVGFPGETTDDFEKTMKLIADVNFDMSYSFIFSARPGTPAADMVDDVPEEEK 240

Query: 388 AERLLCLQKKLREQQVSFNDA 408
            +RL  LQ+++ +Q ++++  
Sbjct: 241 KQRLYILQERINQQAMAWSRR 261


>gi|305663521|ref|YP_003859809.1| RNA modification enzyme, MiaB family [Ignisphaera aggregans DSM
           17230]
 gi|304378090|gb|ADM27929.1| RNA modification enzyme, MiaB family [Ignisphaera aggregans DSM
           17230]
          Length = 426

 Score =  288 bits (737), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 116/448 (25%), Positives = 210/448 (46%), Gaps = 28/448 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + ++++YGC +N  D+  ++ +   +  E V+S  +AD+I+LNTC +R     ++   L 
Sbjct: 2   KIYIETYGCALNRADTNIIKTLLIEKKIEIVDSPREADVIILNTCVVRYDTEVRMLKRLE 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +               ++V+GC+A+A   +I   +P   V++ PQ+ +R+ E +     
Sbjct: 62  ELSKTGKK---------IIVSGCMARALPIKIRSVNPKA-VLLPPQSIHRIYEAINA--- 108

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                D  Y   D+ +  +++    +   GV A + + EGC   C+FC+V   R    S 
Sbjct: 109 -----DDGYIFFDEIKTFTVMPKIID---GVKATIPVAEGCLDECSFCIVKIARPHLKSI 160

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            +  +V+  +++I  G  EI +  Q++ +  G  + GE      L   L   +    +R 
Sbjct: 161 PIENIVNAVKEVISMGAIEIEITAQDL-SVYGYDIYGEYALPKLLESILEIEREDFVIRI 219

Query: 266 TTSHPRDMSDCLIKAHG--DLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
              +PR + + L +         +  ++H+PVQSG++R+L++MNR+H    +  II  +R
Sbjct: 220 GQLNPRHLVNYLDRFIAILRDPRVYKHVHIPVQSGNNRVLEAMNRKHGVELFLDIISELR 279

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
                I I++D IVG PGE ++ F  ++ L+ +    +    +YSPR  T  S M +Q+ 
Sbjct: 280 KKIEGIQIATDIIVGHPGEDEEAFMDSVKLITENYIDRVHIARYSPRPLTRSSLM-KQIP 338

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
           + +K  R   ++K         N   +G I EV I +    +   +GR    + VVL+  
Sbjct: 339 DPIKKSRSSYIEKIYEVVAYEVNREYIGSIAEVWITEIDSRRNIAIGRLFNYRPVVLDRG 398

Query: 444 NHNIGDIIKVRITDVKISTLYG---ELV 468
              +G    V I D     L G   ELV
Sbjct: 399 PEALGRKAFVEIRDATFYDLRGIVKELV 426


>gi|92096943|gb|AAI14872.1| CDKAL1 protein [Bos taurus]
          Length = 416

 Score =  288 bits (737), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 102/380 (26%), Positives = 178/380 (46%), Gaps = 22/380 (5%)

Query: 15  SQIVDQCIVP-QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIR 73
           S   D  I   Q+ +++++GC  N  D   M     + GY+   +  DADL +LN+C ++
Sbjct: 52  SPPSDSTIPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVK 111

Query: 74  EKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTY 133
             A +   + + + +              +V+AGCV QA+  +   +      ++G Q  
Sbjct: 112 NPAEDHFRNSIKKAQEENKK---------IVLAGCVPQAQPRQDYLKG---LSIIGVQQI 159

Query: 134 YRLPELLERARFGKRVVDTDYSVED-KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTF 192
            R+ E++E    G  V       ++ K    + +D    RK  +   ++I  GC   CT+
Sbjct: 160 DRVVEVVEETIKGHSVRLLGQKKDNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTY 219

Query: 193 CVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLY 252
           C   + RG   S  + ++VD A++    GVCEI L  ++  A  G+ +     +   LL+
Sbjct: 220 CKTKHARGNLASYPIDELVDRAKQSFQEGVCEIWLTSEDTGA-YGRDI---GSSLPALLW 275

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGD---LDVLMPYLHLPVQSGSDRILKSMNRR 309
            L E+     +              ++          +  +LH+PVQS SD +L  M R 
Sbjct: 276 KLVEVIPEGAMLRLGMTNPPYILEHLEEMAKILHHPRVYAFLHIPVQSASDTVLMEMKRE 335

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369
           +   ++++++D ++   P I I++D I GFPGETD DF+ T+ LV++  +   F  ++ P
Sbjct: 336 YCVADFKRVVDFLKDKVPGITIATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYP 395

Query: 370 RLGTPGSNMLEQVDENVKAE 389
           R GTP + M EQV   VK +
Sbjct: 396 RPGTPAAKM-EQVPAQVKKK 414


>gi|57234236|ref|YP_181685.1| MiaB family tRNA modification protein [Dehalococcoides ethenogenes
           195]
 gi|57224684|gb|AAW39741.1| tRNA modification enzyme, MiaB family [Dehalococcoides ethenogenes
           195]
          Length = 413

 Score =  287 bits (736), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 108/434 (24%), Positives = 197/434 (45%), Gaps = 33/434 (7%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
             + + GC++N  ++      F   GY  V+  D+ D+ +LN+C +   A  K    +  
Sbjct: 4   IALDTLGCKLNQAETEAFGREFARAGYRLVSPQDNWDIYILNSCTVTHVADRKARYQIRI 63

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
            R       +      + + GC AQ  G+++    P  ++++                  
Sbjct: 64  AR-------RHNPAGFICLMGCYAQNGGDKLSC--PDADLILDNCR-------------- 100

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           K  +  + S     E L+       R R   +F+ IQ+GCD FC++C+VP+ R  +  R 
Sbjct: 101 KSGIAAEISRLFPPEALAPSLYENGRTR---SFIKIQDGCDNFCSYCIVPFVRRHKSCRR 157

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
           + +++ E       G  EI L G  +  +   G+D      + L+ ++     + RLR +
Sbjct: 158 VDEIISEINLRQAEGYQEIVLTGTEIGEYASGGVD-----LAGLIEAILANTQIPRLRLS 212

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
           +  P +++  L+ A  +   L  + H+ +QSGSD IL  M R ++  +Y + ++ IRS  
Sbjct: 213 SLQPGEITPRLL-ALWENPRLCRHFHMALQSGSDCILALMRRPYSLGDYNRALEAIRSQV 271

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           P  A+++D IVGFPGET++DF  ++  + + G+A+  +F YS RLGT  S M  ++D +V
Sbjct: 272 PGAAVTTDLIVGFPGETEEDFALSLKYIQQAGFARVHAFPYSERLGTLASGMEGKIDPSV 331

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHN 446
             +RL  +    +   + +     G   EVL E   ++ G   G +     V        
Sbjct: 332 IKKRLSLVMAAAKSVSMQYRRQSKGLGKEVLWENKMRD-GLWFGYTSDYIRVYGRFSGQP 390

Query: 447 IGDIIKVRITDVKI 460
              I +V++  +  
Sbjct: 391 TNTISQVKLVKIYA 404


>gi|256827193|ref|YP_003151152.1| MiaB-like tRNA modifying enzyme [Cryptobacterium curtum DSM 15641]
 gi|256583336|gb|ACU94470.1| MiaB-like tRNA modifying enzyme [Cryptobacterium curtum DSM 15641]
          Length = 409

 Score =  287 bits (736), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 120/417 (28%), Positives = 196/417 (47%), Gaps = 34/417 (8%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R+ + + GC++N  +S  +      +G   +      D++V+NTC +  +A +K    + 
Sbjct: 2   RYTIINLGCKVNRVESDTIAAQLEDRG--AITDDRYPDVVVINTCTVTGEAEKKTRKTVR 59

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R                VVV GC A  + +E L     V V    Q      E +     
Sbjct: 60  RALRDFMGAR------SVVVTGCAAALDPDEFLSMDERVVVCGKNQVADTCFEAVHE--- 110

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                  +  + ++  R     G +  + G    L IQ+GC   CTFC+V   RG   SR
Sbjct: 111 -------EPLIAEEVRRHLRFGGDFPTRVG----LKIQDGCSAACTFCIVHVARGKAFSR 159

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            L  V+ EA +L D GV E+ L G N+  +            + +   L +    +R+R 
Sbjct: 160 PLPDVLREAHELYDAGVREVVLTGINLGTY-----TSNNANLAKVAQQLIDEMPKLRVRI 214

Query: 266 TTSHPRDMSDCLIKAH-GDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           ++  P   +D LI+        +  +LHLP+QSGS ++L  M R ++A ++  I++RIR+
Sbjct: 215 SSIEPLHATDELIEVLSRQEGRVCRHLHLPLQSGSSKVLHEMARPYSAEQFLSIVERIRT 274

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             P++++S+D IVGFPGETD DF+AT+D+V    +++   F+YS R GTP +   +Q+D 
Sbjct: 275 AVPEVSLSTDIIVGFPGETDQDFQATLDMVRACRFSKVHVFRYSKRAGTPAAARTDQIDS 334

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
            V A R   L +  RE +       +G   +VL+E HG      +G S     V ++
Sbjct: 335 LVSANRSHILSELAREVRWQEATRRIGTSEDVLVESHG------LGMSESYYPVSVD 385


>gi|326443822|ref|ZP_08218556.1| hypothetical protein SclaA2_22283 [Streptomyces clavuligerus ATCC
           27064]
          Length = 472

 Score =  287 bits (736), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 119/461 (25%), Positives = 186/461 (40%), Gaps = 49/461 (10%)

Query: 48  FFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAG 107
             + G++ V    DAD+ V+NTC   E A +     L    +LK+     G    VV  G
Sbjct: 1   MAADGWQLVEDAADADVAVVNTCGFVEAAKKDSVDALLEANDLKD----HGRTQAVVAVG 56

Query: 108 CVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG--------------------- 146
           C+A+  G+E+    P  + V+G   Y  + + L+    G                     
Sbjct: 57  CMAERYGKELAEALPEADGVLGFDDYADISDRLQTILSGGIHASHTPRDRRKLLPLSPAE 116

Query: 147 ---------------KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCT 191
                                D       E                A + +  GCD+ C+
Sbjct: 117 RQSATGVALPGHGDAAPAPIVDLPEGVAPESGPRAPLRRRLGSSPVASVKLASGCDRRCS 176

Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLL 251
           FC +P  RG  ISR  S V+ E R L + GV E+ L+ +N N   GK L G+      LL
Sbjct: 177 FCAIPSFRGSFISRRPSDVLGETRWLAEQGVKEVMLVSEN-NTSYGKDL-GDIRLLETLL 234

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
             L+ + G+ R+R +   P +M   LI        + PY  L  Q  +  +L+SM R   
Sbjct: 235 PELAAVDGIERVRVSYLQPAEMRPGLIDVLTSTPKIAPYFDLSFQHSAPDVLRSMRRFGD 294

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
              + ++++ IRS  P   + S+FIVGFPGE++ DF      +          F YS   
Sbjct: 295 TERFLELLETIRSKAPQAGVRSNFIVGFPGESEADFAELERFLTHARLDAIGVFGYSDED 354

Query: 372 GTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR 431
           GT  +    ++DE+V AERL  L +   E      +  VG+ +EVL+E    E G  VGR
Sbjct: 355 GTEAAGYGNKLDEDVVAERLAHLSRLAEELTAQRAEERVGETLEVLVESVDAEDG-AVGR 413

Query: 432 ----SPWLQS-VVLNSKNHNI-GDIIKVRITDVKISTLYGE 466
               +P     ++  +    + G ++  +    +   L  +
Sbjct: 414 AAHQAPETDGQILFTASEGLVPGRMVVAKAVGAEGVDLLAD 454


>gi|319957025|ref|YP_004168288.1| miab-like tRNA modifying enzyme [Nitratifractor salsuginis DSM
           16511]
 gi|319419429|gb|ADV46539.1| MiaB-like tRNA modifying enzyme [Nitratifractor salsuginis DSM
           16511]
          Length = 421

 Score =  287 bits (735), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 112/429 (26%), Positives = 213/429 (49%), Gaps = 31/429 (7%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           Q+ + K++GC+ N +D+  M        +E      +AD++V+N+C +   A   V  ++
Sbjct: 4   QKVYFKTFGCRTNQFDTQVMMSRLKD--FELCLEESEADVVVVNSCTVTNGADATVRGYI 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             +R       +   ++ VV+AGC A ++GEE+L++   V+ V+G     R+ E+L R  
Sbjct: 62  NALR-------RRHPEVRVVLAGCGAHSKGEELLKQ-GKVHGVMGHSEKERINEILHRPE 113

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
               + D ++         ++V     + R   AF+ IQEGC+  C++C++P+ RG   S
Sbjct: 114 GFYEIGDLEHV------DSTVVSEFVGKSR---AFIKIQEGCNFRCSYCIIPFVRGNARS 164

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
               Q++++ R+L  NG  E  L G NV +  G+       + + LL  +S+I+G+ R+R
Sbjct: 165 HDEEQILEQVRRLAANGFGEFILTGTNVGS-YGRD---RGTSLAKLLKRMSQIRGVRRIR 220

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
             +  P  +    ++   +   +  +LH+ +Q  SDR+L+ MNRR+   E  ++ + + +
Sbjct: 221 IGSLEPIQIDAEFMELLAE-PWMARHLHIALQHTSDRMLELMNRRNRYPEDLKLFETLAA 279

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
                A+ +DFIVG PGE + ++R  M+ +D +      +F YSPR GT  +++      
Sbjct: 280 K--GYALGTDFIVGHPGEGEAEWREAMERIDVLPLTHIHAFTYSPREGTASTSLELPRPR 337

Query: 385 -NVKAERLLCLQKKLREQQVSFNDAC-VGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
            +V   R   L + +R++ + F  +   G  + VL+E   ++ G   G   +   V++ S
Sbjct: 338 GDVAKARHRELTEAIRQKNLRFRRSHNEG--LTVLVETQ-RQDGLYQGFDQYYNKVLIES 394

Query: 443 KNHNIGDII 451
                   +
Sbjct: 395 SEDLNNTWV 403


>gi|148251981|ref|YP_001236566.1| putative MiaB-like tRNA modifying enzyme [Bradyrhizobium sp. BTAi1]
 gi|146404154|gb|ABQ32660.1| putative MiaB-like tRNA modifying enzyme [Bradyrhizobium sp. BTAi1]
          Length = 434

 Score =  287 bits (735), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 128/441 (29%), Positives = 197/441 (44%), Gaps = 33/441 (7%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
             V ++GC++N ++S  +     + G         +D IV+N+C +  +A  +    + +
Sbjct: 3   VDVVTFGCRLNAFESELIARHAEAAG--------ASDTIVINSCAVTNEAVAQARQTIRK 54

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT------YYRLPELL 140
           ++       +E     +VV GC AQ     +    P V+ V+G +       +    + L
Sbjct: 55  LK-------RERPAARIVVTGCAAQT-QAGMFADMPEVDRVMGNEDKLQLDAWRATAQAL 106

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRG-VTAFLTIQEGCDKFCTFCVVPYTR 199
              RFG    +     +               +RG    F+ +Q GCD  CTFC++P+ R
Sbjct: 107 APPRFGIDTSEKVAVSDIMAVTEMAPHLVEGFQRGLPRVFVQVQNGCDHRCTFCIIPFGR 166

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G   S  +  VVD+ R L   G  EI L G ++ +  G  L G       +   L  +  
Sbjct: 167 GNSRSVPMGAVVDQVRALAARGHAEIVLTGVDLTS-YGHDLPGTPKLGRLVKQILRHVPE 225

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           L RLR ++    +    L+ A  D   LMP+LHL +Q+G D ILK M RRH+  +     
Sbjct: 226 LQRLRISSIDSIEADADLLDALADDARLMPHLHLSLQAGDDLILKRMKRRHSRADAVAFC 285

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
           D +R +RPDIA+ +D I GFP ET+D F  +++LV++ G A    F YSPR GTP + M 
Sbjct: 286 DHVRLLRPDIALGADLIAGFPTETEDMFVRSLELVEECGLAFLHVFPYSPRPGTPAARMP 345

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV 439
            QVD  V  ER   L+           DA +G   EVLIE          GR+     V 
Sbjct: 346 -QVDGAVIRERARRLRAAGEVALRQRLDAEIGCEREVLIESA------TQGRTEHYLPVA 398

Query: 440 LNSKNHNIGDIIKVRITDVKI 460
           +       G + +++I     
Sbjct: 399 VTGAAS--GTVQRLKIAGHDE 417


>gi|291295078|ref|YP_003506476.1| RNA modification enzyme, MiaB family [Meiothermus ruber DSM 1279]
 gi|290470037|gb|ADD27456.1| RNA modification enzyme, MiaB family [Meiothermus ruber DSM 1279]
          Length = 440

 Score =  287 bits (735), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 116/441 (26%), Positives = 195/441 (44%), Gaps = 26/441 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R  VK+ GC++N  +S  +  +        V     ADL+V+NTC +   A         
Sbjct: 8   RLAVKTLGCKVNQVESDALVGLLKPLQPVVVPLEAGADLVVINTCAVTTSAEAD------ 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
             R       +      +VV GC A+   +++       +VV+       LP ++ + RF
Sbjct: 62  -ARKEVRRARRANPAAFIVVTGCYAELAPDQLAEL--GADVVLPNSRKAELPGVILQ-RF 117

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G   +  D       E     + G      V AFL +Q+GC+  C +C++P  RG E  R
Sbjct: 118 G---LPADPITTPPNEFWGAGERGLL-NNYVRAFLKVQDGCNAGCAYCIIPRLRGRERHR 173

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
                + EA  L++ GV EI L G  + +++     G     + L+  L+ +   VRL  
Sbjct: 174 GYRDALSEAGALLEAGVQEIVLTGVRLGSYK-----GHPRGIAGLVEELALMGAKVRL-- 226

Query: 266 TTSHPRDMSDCLIKAHGDL-DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           ++  P D  D L++        + P+LHL +Q+GS R+L  M RR+    YR++  +   
Sbjct: 227 SSIEPEDTGDELLRVMQRFAPQVRPHLHLSLQTGSGRLLALMGRRYDKNYYRELAQKAYD 286

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             P  A+++D I G P ET+D+ + T+  ++++  ++   F Y+PR  T  +++  QV  
Sbjct: 287 WIPGFALTTDVIAGLPTETEDEHQETLAFLEEVRPSRVHVFTYTPRPKTRAASLP-QVPI 345

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
            ++  R   LQ        +     +G  +EVL+E      GK  G +P    V      
Sbjct: 346 EIRKRRNKELQALAARLAEARVRPKLGGAVEVLVE--SFRGGKAYGHTPDYYEVEFTG-Q 402

Query: 445 HNIGDIIKVRITDVKISTLYG 465
             IG    VR+  ++  TL G
Sbjct: 403 ARIGQTAWVRVEAIEGYTLRG 423


>gi|238065379|sp|A7H5G3|RIMO_CAMJD RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
          Length = 439

 Score =  287 bits (735), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 107/439 (24%), Positives = 200/439 (45%), Gaps = 30/439 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + ++ S GC  N+ DS  M     +  YE  +    AD++++NTC   + A ++  + + 
Sbjct: 3   KLYLMSLGCNKNLVDSEIMLGRLSA--YELCDEPSKADVLIVNTCGFIDSAKKESINAIL 60

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +   +        D L+VV GC+ Q   EE+++  P V++  G   Y R+ E++   + 
Sbjct: 61  DLHEQRKK------DSLLVVTGCLMQRYREELMKELPEVDLFTGVGDYERIDEMI--LKK 112

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                ++ Y   +  +R+      +       AF+ I EGC++ C+FC +P  +G   SR
Sbjct: 113 TNLFSNSTYLQSENSKRIITGSNSH-------AFIKIAEGCNQKCSFCAIPSFKGRLKSR 165

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            ++ ++ E + L+  G  + + + Q+ +++      GEK     L+  + +IKG+   R 
Sbjct: 166 QINSIIAELKDLVARGYKDFSFIAQDTSSYLFD--KGEKDGLIRLIDEVEKIKGIRAARI 223

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
              +P   S+ LIK     ++ + Y  +P+Q  SD +LK M R   +   +++++ ++S 
Sbjct: 224 LYLYPTSASEALIKRIIASEIFVNYFDMPLQHISDNMLKIMKRGTNSTRLKEMLNLMKSA 283

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P+  + + FIVG PGE++ DF    + V   G+ +   F YS    T   +M EQV   
Sbjct: 284 -PNSFLRTGFIVGHPGESEADFEKLCEFVKDFGFDRVSVFAYSKEEDTAAFDM-EQVPFK 341

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG----R-SPWLQSVVL 440
           V  +RL  ++K + E      +  V Q   V+      E    +     R    +   +L
Sbjct: 342 VINKRLKIIEKIVDEVIEKSFEKEVEQKRLVVCTGESSEGEFFIAAKDLRWDREIDGEIL 401

Query: 441 ----NSKNHNIGDIIKVRI 455
                  N  +G I +  I
Sbjct: 402 INESECGNLEMGQIYECEI 420


>gi|291288283|ref|YP_003505099.1| MiaB-like tRNA modifying enzyme YliG [Denitrovibrio acetiphilus DSM
           12809]
 gi|290885443|gb|ADD69143.1| MiaB-like tRNA modifying enzyme YliG [Denitrovibrio acetiphilus DSM
           12809]
          Length = 435

 Score =  287 bits (735), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 104/417 (24%), Positives = 179/417 (42%), Gaps = 28/417 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC  N  D   +       G++  N  +++D I++NTC   E A  +    + 
Sbjct: 5   KVSFISLGCSKNQVDLEYLMGAIEKAGFQITNIPEESDAIIVNTCGFIEPAVAEAIDNIL 64

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +   + +  K      ++V GC+++   +E+    P V+   G     ++   L     
Sbjct: 65  EMGERRKAGAK------LIVTGCMSERYSDEMKTEFPEVDYFTGVGDLQKVVGYL----- 113

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
               ++ D +V D  +   + +  Y       A+L + EGCD  C++C +P  RG  +SR
Sbjct: 114 ----LEDDSAVPDYGDARILANEHY------FAYLKVSEGCDNRCSYCAIPGIRGGLVSR 163

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            +  +V EA  L+D GV E+ ++ Q+ N   GK + G K +  +LL  L  I+G  ++R 
Sbjct: 164 KMEDIVKEAESLVDGGVKELIVISQD-NTKYGKDIYG-KPSMPELLKKLEGIEGDFKIRI 221

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
              +P  ++  LI        ++ Y  +PVQ  SD++LK+M R+  +     + D IR  
Sbjct: 222 MYLNPDGVTQELIDVICGSKKILSYFDIPVQHYSDKMLKAMKRKSDSSIIDDVYDSIRKA 281

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P+  I +  IVGFPGET+ DF      + +     A  F Y    GT    +   V + 
Sbjct: 282 DPESFIRTTMIVGFPGETEGDFAELEKFLTRHKPDFAGFFPYYREKGTSAYELGASVGKR 341

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGR----SPWLQS 437
               R+  LQK  +    +         I   +E    +    L GR    +P +  
Sbjct: 342 ETNRRIRALQKIQKTNTNNRLKMLKKNDIICFVEGESDQSELILQGRALFQAPEIDG 398


>gi|189485173|ref|YP_001956114.1| hypothetical protein TGRD_170 [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
 gi|238055294|sp|B1GZH1|RIMO_UNCTG RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|170287132|dbj|BAG13653.1| conserved hypothetical protein [uncultured Termite group 1
           bacterium phylotype Rs-D17]
          Length = 439

 Score =  287 bits (734), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 114/452 (25%), Positives = 204/452 (45%), Gaps = 27/452 (5%)

Query: 18  VDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA 77
           +   I+ Q   V + GC  N  ++  +  +F  +G++  +++D AD++V++TC   + A 
Sbjct: 1   MTDNIM-QTIAVIALGCPKNTVEAEYLLGIFQEKGFKISSNLDKADIVVIHTCSFIKAAK 59

Query: 78  EKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLP 137
            +    +  I ++K         L V V+GC+ Q   E++    P ++   G  T   LP
Sbjct: 60  AESEKCIRTILDIKKK-----KSLRVYVSGCLPQLLKEKMSVLFPDIDGFAGTGTLQYLP 114

Query: 138 ELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197
           +L+    FG+ ++      +  +  LS            +A+L I EGC   C+FC++P 
Sbjct: 115 DLVFGKNFGRFILPPGGLNDSNYRVLSSTI--------PSAYLKIAEGCGHVCSFCIIPA 166

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257
            RG   SR++  +VDE   L ++G+ E+ L+ Q+     GK + G       L+  LS+I
Sbjct: 167 LRGRYESRTMESLVDEVAALAESGIKELILIAQDTTG-YGKDIYGAFVLDKLLVK-LSKI 224

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
            GL  +R   ++P  ++D LI+   +   +  Y+ +P+Q  S  +L +M R         
Sbjct: 225 NGLKWIRLLYAYPSSITDGLIEVFKEHKKICSYMDIPIQHASKNVLSAMKRPLNTPG--- 281

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
           II++I+   PDI + +  I GFPGET  D    ++ +++  +  A  F+YS       S 
Sbjct: 282 IIEKIKRKLPDIVLRTSIIAGFPGETKKDVNELINFLNRGYFQYAGVFEYSDLKEAVSSK 341

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV--GR---- 431
           +   V      ER + ++        +  D      IE L+E   K+       GR    
Sbjct: 342 LKRHVRAAAAKERKIMIENAQYNIFQAKIDKIKNNTIEFLVESCLKKGNVYSIKGRSSFQ 401

Query: 432 SPWLQSVVL--NSKNHNIGDIIKVRITDVKIS 461
           SP +   ++  N K   +G   K ++  V   
Sbjct: 402 SPEIDGNIILENDKPLTVGGFCKAKVRSVDGY 433


>gi|156938206|ref|YP_001436002.1| RNA modification protein [Ignicoccus hospitalis KIN4/I]
 gi|156567190|gb|ABU82595.1| RNA modification enzyme, MiaB family [Ignicoccus hospitalis KIN4/I]
          Length = 423

 Score =  287 bits (734), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 112/443 (25%), Positives = 209/443 (47%), Gaps = 26/443 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + + ++YGC + + ++ R+ +   S+GYE V   ++AD  ++ TC +R +  +++     
Sbjct: 2   KIYYETYGCAVMLGEAERVLEELKSKGYEVVGRPEEADASIIFTCTVRSETEQRMA---W 58

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           RI+ L  +  K      ++V GC+A A+   +    P  ++V    +   L E+    + 
Sbjct: 59  RIKELCKASKK------LIVTGCLASAQPGLVKMVCPRASIV----SNSSLHEIELALKG 108

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            K+ +       D  + ++          G    + I +GC   CTFC+    R   +S+
Sbjct: 109 EKKYLLKGQRPRDWLKGVTP--------GGFRVVIPIADGCLGNCTFCITKVARPRLVSQ 160

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
               +++ A K +  G  EI L   +V A  GK +  E     + L  +      VR+  
Sbjct: 161 RPDSIIEYALKGVKRGAKEIWLTAPDVAA-YGKEIGLELPDLLEKLLKVLPENVYVRVGM 219

Query: 266 TTSH-PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
            +    R++ D  I    D   +  + HLP+QS SD++L+ M RR+T  E+ +I++++R 
Sbjct: 220 MSPDTFREVMDRTIDVMRD-PRVFKFFHLPLQSASDKVLRLMGRRYTYSEFVEIVNKVRK 278

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
              D  I++D +VGFPGE +DDF  T+  + ++ + +     Y+PR  T G+ M  QV E
Sbjct: 279 AFNDPTIATDVMVGFPGEEEDDFELTLKALRELAFERVHLAAYTPRPLTLGARMP-QVRE 337

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
           +VK+ R+      +    V  +   VG   +  ++++ ++ G  V R      VVL  + 
Sbjct: 338 DVKSRRVKRAMNVIEAVGVEVHKRYVGGKFKAFVDEYDQKHGTFVARLWNYTPVVL-REE 396

Query: 445 HNIGDIIKVRITDVKISTLYGEL 467
            ++G+ I V+I       L G +
Sbjct: 397 SSLGEEIVVKIEGATFYDLRGTV 419


>gi|73748729|ref|YP_307968.1| MiaB family tRNA modification protein [Dehalococcoides sp. CBDB1]
 gi|147669495|ref|YP_001214313.1| MiaB-like tRNA modifying enzyme [Dehalococcoides sp. BAV1]
 gi|73660445|emb|CAI83052.1| tRNA modification enzyme, MiaB family [Dehalococcoides sp. CBDB1]
 gi|146270443|gb|ABQ17435.1| MiaB-like tRNA modifying enzyme [Dehalococcoides sp. BAV1]
          Length = 416

 Score =  287 bits (734), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 116/434 (26%), Positives = 197/434 (45%), Gaps = 33/434 (7%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
             + + GC++N  ++  M   F   GY  V+  D+ D+ +LNTC +   A  K    +  
Sbjct: 4   IALDTLGCKLNQAETEAMGREFAQAGYHLVSPQDNWDIYILNTCTVTHVADRKARYQMRI 63

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
            R       +      + + GC A+  G EI    P  N+++                  
Sbjct: 64  AR-------RHNPSGFICLTGCYAENGGNEISC--PDANLIL----------------DN 98

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           ++  D   ++   F   +     Y + R   +F+ IQ+GCD FCT+C+VP+ R  +  R 
Sbjct: 99  RQKTDIVNNIIRLFPLENSASALYEKGR-TRSFIKIQDGCDNFCTYCIVPFVRRYKNCRG 157

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
           +  ++ E       G  EI L G  +  +   G +      + L+ ++ E   + RLR +
Sbjct: 158 VDDIISEINLRQAEGYQEIVLTGTEIGEYTSSGFN-----LAGLIEAILERTRIPRLRLS 212

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
           +  P +++  L+ A      L  + H+ +QSGSDRIL  MNR ++  +Y + ++ IR   
Sbjct: 213 SLQPNEITLPLL-ALWKNRRLCNHFHMALQSGSDRILGLMNRPYSLTDYTRTLEAIRRQI 271

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           PD+A+++D IVGFPGETD+DF  ++  V++ G+A+   F YS R GT  S + ++VD  V
Sbjct: 272 PDVAVTTDMIVGFPGETDEDFACSLKYVEQAGFARVHPFPYSERPGTMASQLTDKVDPVV 331

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHN 446
              RL  +    +   + +         EVL E   K+ G   G +P    V        
Sbjct: 332 IKTRLSGMMLAAKNASLEYRHQSRDLEKEVLWENKMKD-GLWFGYTPDYIRVYGKFTEKP 390

Query: 447 IGDIIKVRITDVKI 460
              I +V++  V  
Sbjct: 391 TNTISRVKLAKVYA 404


>gi|153951469|ref|YP_001398743.1| putative tRNA modifying protein [Campylobacter jejuni subsp. doylei
           269.97]
 gi|152938915|gb|ABS43656.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Campylobacter
           jejuni subsp. doylei 269.97]
          Length = 455

 Score =  287 bits (734), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 107/439 (24%), Positives = 200/439 (45%), Gaps = 30/439 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + ++ S GC  N+ DS  M     +  YE  +    AD++++NTC   + A ++  + + 
Sbjct: 19  KLYLMSLGCNKNLVDSEIMLGRLSA--YELCDEPSKADVLIVNTCGFIDSAKKESINAIL 76

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +   +        D L+VV GC+ Q   EE+++  P V++  G   Y R+ E++   + 
Sbjct: 77  DLHEQRKK------DSLLVVTGCLMQRYREELMKELPEVDLFTGVGDYERIDEMI--LKK 128

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                ++ Y   +  +R+      +       AF+ I EGC++ C+FC +P  +G   SR
Sbjct: 129 TNLFSNSTYLQSENSKRIITGSNSH-------AFIKIAEGCNQKCSFCAIPSFKGRLKSR 181

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            ++ ++ E + L+  G  + + + Q+ +++      GEK     L+  + +IKG+   R 
Sbjct: 182 QINSIIAELKDLVARGYKDFSFIAQDTSSYLFD--KGEKDGLIRLIDEVEKIKGIRAARI 239

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
              +P   S+ LIK     ++ + Y  +P+Q  SD +LK M R   +   +++++ ++S 
Sbjct: 240 LYLYPTSASEALIKRIIASEIFVNYFDMPLQHISDNMLKIMKRGTNSTRLKEMLNLMKSA 299

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P+  + + FIVG PGE++ DF    + V   G+ +   F YS    T   +M EQV   
Sbjct: 300 -PNSFLRTGFIVGHPGESEADFEKLCEFVKDFGFDRVSVFAYSKEEDTAAFDM-EQVPFK 357

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG----R-SPWLQSVVL 440
           V  +RL  ++K + E      +  V Q   V+      E    +     R    +   +L
Sbjct: 358 VINKRLKIIEKIVDEVIEKSFEKEVEQKRLVVCTGESSEGEFFIAAKDLRWDREIDGEIL 417

Query: 441 ----NSKNHNIGDIIKVRI 455
                  N  +G I +  I
Sbjct: 418 INESECGNLEMGQIYECEI 436


>gi|224373407|ref|YP_002607779.1| hypothetical protein NAMH_1386 [Nautilia profundicola AmH]
 gi|223589096|gb|ACM92832.1| conserved hypothetical protein [Nautilia profundicola AmH]
          Length = 432

 Score =  286 bits (733), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 91/452 (20%), Positives = 203/452 (44%), Gaps = 30/452 (6%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ ++ S GC  N+ DS  M     ++ Y   ++  +ADL+++NTC     A E+    +
Sbjct: 2   KKLYLASLGCVKNLIDSEVMLGKLKNE-YTLTDNPGEADLLIVNTCGFINPAKEESIETI 60

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             + N K          ++ V GC+++   + + +  P V+V  G   + ++ EL++   
Sbjct: 61  LELANEKKE------SAILAVTGCLSERYKDILPKEIPEVDVWSGVGDFDKIDELVK--- 111

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
                  T  S       L   +          A++ + EGC++ C FC +P  +G   S
Sbjct: 112 -------TKSSKFSPNVYLIHNEERVITGSSYHAYIKLSEGCNQKCAFCAIPNFKGRLNS 164

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R + ++++E ++L   G  + +L  Q+ +++      G K     L+  + +I+G+  +R
Sbjct: 165 REIPEIIEEIKRLKAQGFKDFSLASQDSSSYLRD--KGIKDGLERLIDEIDKIEGIT-VR 221

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
               +P   +  LI+      V+  Y  +P+Q  S+++LK M R  +  + + ++  ++ 
Sbjct: 222 ILYLYPATTTKKLIRRIFASPVVENYFDMPIQHISEKMLKIMRRPGSVDKLKSLLYEMKK 281

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
                 I +  IVG PGE+++DF    + + +  + +   F YS    T      +++ +
Sbjct: 282 EF--SFIRTSVIVGHPGESEEDFEELKNFIKEFEFDRVNVFAYSDEEDTAAFKRKDKISQ 339

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQS-VV 439
           N+  +R   L K +++         + +     ++   +++     R    +P +   ++
Sbjct: 340 NIIDQRAKELGKTVKQTTKKALKKYLNKTCRCYLDGLTEDELFYSVRPKLWAPEIDGDIL 399

Query: 440 LNS---KNHNIGDIIKVRITDVKISTLYGELV 468
           +N    +N  IG++  V+I ++    L G+++
Sbjct: 400 INDSEIENLEIGNLYNVKIENLAGEQLIGKII 431


>gi|242021866|ref|XP_002431364.1| radical sam protein, putative [Pediculus humanus corporis]
 gi|212516632|gb|EEB18626.1| radical sam protein, putative [Pediculus humanus corporis]
          Length = 442

 Score =  286 bits (733), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 102/386 (26%), Positives = 178/386 (46%), Gaps = 21/386 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + ++K++GC  N  DS  M  +  S GY  V   + ADL +LN+C ++  A     + + 
Sbjct: 56  KIYIKTWGCTHNSSDSEYMAGLLSSYGYNLVEDPEIADLWLLNSCTVKNPAESHFRNEIE 115

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           + R L            +V AGCV Q   ++   ++     ++G     R+ E++E    
Sbjct: 116 KGRKL---------GKHIVAAGCVPQGAPKQNYIQN---LSIIGIHNIDRVVEVVEETLK 163

Query: 146 GKRVVDTDYSVED-KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
           G  V       E+ K    + +     RK      + I  GC   CT+C   + RG   S
Sbjct: 164 GHSVRLLSQKKENGKKLGGANLLLPKVRKNPYIEIIPISTGCLNQCTYCKTKHARGELGS 223

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE-IKGLVRL 263
             + ++V+ A++    GV E+ L  ++  A  GK +     +  +LL+ + E I    R+
Sbjct: 224 YPVEEIVERAKQAFSEGVVELWLTSEDTGA-YGKDI---GASLPELLWKVVEVIPDNCRM 279

Query: 264 RYTTSHPRDMSDCL--IKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R   ++P  + + L  +    + + +  +LH+PVQSGSD +L  M R +T  +++ ++D 
Sbjct: 280 RVGMTNPPYILEHLEEMAKILNHEKVYSFLHVPVQSGSDAVLSDMKREYTISDFKHVVDF 339

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R   P I I++D I GFP ET+ DF  T+ L +   +   F  ++ PR GTP + M+ +
Sbjct: 340 LRLRVPGITIATDIICGFPTETEKDFEETLSLCETYKFPSLFINQFYPRPGTPAAKMV-K 398

Query: 382 VDENVKAERLLCLQKKLREQQVSFND 407
           V  +   +R   L           N 
Sbjct: 399 VPMHEVKQRTKKLADLFHNSNKKDNK 424


>gi|34557848|ref|NP_907663.1| 2-methylthioadenine synthetase [Wolinella succinogenes DSM 1740]
 gi|34483566|emb|CAE10563.1| conserved hypothetical protein-2-methylthioadenine synthetase
           [Wolinella succinogenes]
          Length = 416

 Score =  286 bits (733), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 115/447 (25%), Positives = 208/447 (46%), Gaps = 31/447 (6%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           ++  + + K++GC+ N++D+  M     +  +E     + AD++V+N+C +   A   V 
Sbjct: 1   MMRPKVYFKTFGCRTNLFDTQIMIKNLQN--FELTEIEESADIVVVNSCTVTNGADSGVR 58

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S+L R+++             V + GC     GEEI  +  +   V G     ++  LL 
Sbjct: 59  SYLHRLKS---------EGKRVYLTGCGVLTRGEEIFTQ-ELAFGVFGHSYKEQIDSLLS 108

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           +         T +S +   E +              AF+ +QEGCD  C++C++P  RG 
Sbjct: 109 QK--------TRFSFKGDLEHIDST-VITEFIGKSRAFVKVQEGCDFSCSYCIIPSVRGK 159

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
             S  + ++V +   L  +G  E  L G NV +  GK         + LL +LS+IKG+ 
Sbjct: 160 ARSLPVDRIVSQVEILAQHGFGEFVLTGTNVGS-YGKESGLN---VAKLLKALSQIKGVK 215

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           RLR  +  P  +    ++   +   +  +LH+ +Q  S ++L+ MNRR+ A     + +R
Sbjct: 216 RLRLGSLEPSQIDAEFMELL-EEPFMARHLHIALQHTSPKMLQIMNRRNEAQGDLALFER 274

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +       A+ +DFI+G PGE+++ ++   +           +F YSPR GTP S M ++
Sbjct: 275 LAQK--GYALGTDFILGHPGESEEVWKEAWERFVAFPLTHLHAFVYSPREGTPSSLMKDR 332

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           +  N+  ER+  LQ+++RE    F     G+ + VLIE   +E G   G   +   + + 
Sbjct: 333 ISGNIAKERMRILQERVRENNHHFRQK--GEKLWVLIESE-REGGLYQGLDQFFNRIEIR 389

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
           S +   G  ++V   + +      EL+
Sbjct: 390 SSDSLAGRWLEVSDYEAESEINRAELL 416


>gi|118373032|ref|XP_001019710.1| MiaB-like tRNA modifying enzyme, archaeal-type family protein
           [Tetrahymena thermophila]
 gi|89301477|gb|EAR99465.1| MiaB-like tRNA modifying enzyme, archaeal-type family protein
           [Tetrahymena thermophila SB210]
          Length = 574

 Score =  286 bits (733), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 114/458 (24%), Positives = 202/458 (44%), Gaps = 43/458 (9%)

Query: 16  QIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREK 75
            + +Q    Q  +VK++GC  N+ DS  M       GY   +   DA LI++N+C ++  
Sbjct: 65  PVNNQVPGTQNVYVKTFGCSHNISDSEFMMGQLAEYGYNLCSDPKDAHLILVNSCTVKNP 124

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135
           + +   + +   ++ K           +VVAGCV Q  G+  +     V+ V+G     R
Sbjct: 125 SQDAFMTIVKTYKHKKKP---------IVVAGCVPQ--GDRNIPGLEDVS-VIGISQIDR 172

Query: 136 LPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
           + E++E    G +V             L  +D    R             C   CT+C  
Sbjct: 173 VVEVVEETLKGNKVRLYGKKT------LPSLDLPKIR-------------CLGSCTYCKT 213

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
            + RG   S     +V+  + + + GV EI L  ++  A  G+ +       S LL  + 
Sbjct: 214 KHARGKLGSYQPEAIVNRVKTVCEEGVKEIWLTSEDTGA-YGRDI---GTDISQLLRLIV 269

Query: 256 EI-KGLVRLRYTTSHPRDMSDCL--IKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
           E+    V LR   ++P  + + L  +        +  +LH+PVQ+ ++ +L++MNR +T 
Sbjct: 270 EVLPNDVMLRVGMTNPPYILEHLQNMSTILRHPRVFSFLHIPVQAANNTVLENMNREYTC 329

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
            E+ Q+ D +    P++ I++D I GFPGET+  F  T+ LVDK  +      ++ PR G
Sbjct: 330 EEFEQVCDYLLKNVPNMTIATDIICGFPGETNAQFDDTLKLVDKYKFPILNISQFYPRPG 389

Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG--KLVG 430
           T    M +   ++VK  R   + +          D  +G    + I     +KG  +LVG
Sbjct: 390 TAAMKMKKVPSQDVKM-RSKKITELFD--TFKRWDHLLGTTQRIWINDKEDKKGVLQLVG 446

Query: 431 RSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            +     V+L  +   +G  + +++T V    + GE++
Sbjct: 447 HTKQYAKVMLPFEEELLGKSVIIKVTKVLTWHIEGEII 484


>gi|42525237|gb|AAS18318.1| CDK5 regulatory subunit associated protein 1 transcript variant 4
           [Homo sapiens]
          Length = 426

 Score =  286 bits (733), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 107/334 (32%), Positives = 191/334 (57%), Gaps = 25/334 (7%)

Query: 17  IVDQCI-VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREK 75
           ++D+ +   ++ ++++YGCQMNV D+     +    GY R +++ +AD+I+L TC IREK
Sbjct: 91  MMDELLGRQRKVYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCSIREK 150

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135
           A + +++ L +++ LK  R +    L + + GC+A+   EEIL R  +V+++ GP  Y  
Sbjct: 151 AEQTIWNRLHQLKALKTRRPRSRVPLRIGILGCMAERLKEEILNREKMVDILAGPDAYRD 210

Query: 136 LPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
           LP LL  A  G++  +   S+++ +  +  V          +AF++I  GCD  C++C+V
Sbjct: 211 LPRLLAVAESGQQAANVLLSLDETYADVMPVQTS---ASATSAFVSIMRGCDNMCSYCIV 267

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG---------------KGL 240
           P+TRG E SR ++ +++E +KL + G+ E+TLLGQNVN++R                +G 
Sbjct: 268 PFTRGRERSRPIASILEEVKKLSEQGLKEVTLLGQNVNSFRDNSEVQFNSAVPTNLSRGF 327

Query: 241 DGEKCT------FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP 294
                T      F+ LL  +S +   +R+R+T+ HP+D  D +++   + D +   +HLP
Sbjct: 328 TTNYKTKQGGLRFAHLLDQVSRVDPEMRIRFTSPHPKDFPDEVLQLIHERDNICKQIHLP 387

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
            QSGS R+L++M R ++   Y +++  IR   P+
Sbjct: 388 AQSGSSRVLEAMRRGYSREAYVELVHHIRESIPE 421


>gi|167042354|gb|ABZ07082.1| putative Radical SAM superfamily protein [uncultured marine
           crenarchaeote HF4000_ANIW97M7]
          Length = 422

 Score =  286 bits (733), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 106/445 (23%), Positives = 203/445 (45%), Gaps = 30/445 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + +V++YGC  +  DS  +  +  + G+  V    ++DL ++ TC +++  A ++   + 
Sbjct: 3   KIWVEAYGCSSSFADSEMISGLIVNGGHTLVQDQSESDLNLIVTCSVKDVTATRMVHRI- 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                     K+     +VVAGC+ +AE   + + +   ++ +GP +  +  +++E    
Sbjct: 62  ----------KQSQSKPLVVAGCLPKAERHTVEKFAQNASM-MGPNSIGKTLQVIEATLN 110

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G +VV  D +       LS V     R       + I  GC   CTFC     +G   S 
Sbjct: 111 GSKVVALDDT------DLSKVGIPKIRLNPAVGIVEIANGCMSECTFCQTKLAKGDLNSY 164

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            +  +V + ++ + +G  EI L   + N   G  +       S L+  +S+I    ++R 
Sbjct: 165 RIGDIVRQVKRELADGCKEIWLSSTD-NGCYGLDI---GEDLSSLIEQVSQIPEDFKIRV 220

Query: 266 TTSHPRDMSDC---LIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
              +P  M      L+K+  + + +  +LH+PVQSGS+ +L +M R HT   ++ ++ + 
Sbjct: 221 GMMNPMFMPRIRDNLLKSF-ENNKVFRFLHVPVQSGSNDVLNNMKRGHTVETFKDVVRKF 279

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+      IS+D I+G+P ET ++F  T+ L+ +         +YS R GT  + M  Q+
Sbjct: 280 RTKFGPFTISTDIIIGYPTETQENFEETIALLKETRPDIVNLSRYSQRPGTVAAEMP-QI 338

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
           D      R   + +      +  N   +G    VL +++    G++ GR+   + + +N 
Sbjct: 339 DVAEVKRRSKQVTELNNNISLENNRKWIGWKGNVLFDENL--DGQVKGRNFAYKPIFVN- 395

Query: 443 KNHNIGDIIKVRITDVKISTLYGEL 467
           +   IG    VR+      +L GE+
Sbjct: 396 EITEIGQTCTVRVVGATNHSLIGEI 420


>gi|88608641|ref|YP_506660.1| MiaB family tRNA modification protein [Neorickettsia sennetsu str.
           Miyayama]
 gi|88600810|gb|ABD46278.1| tRNA modification enzyme, MiaB family [Neorickettsia sennetsu str.
           Miyayama]
          Length = 429

 Score =  286 bits (733), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 132/444 (29%), Positives = 205/444 (46%), Gaps = 30/444 (6%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
             V ++GC++N Y+S  ++++        V   D  + I++NTC +  +A  +V   + +
Sbjct: 15  VKVITFGCRLNFYESDLIKNL--------VGIRDSRECIIINTCAVTNEAVRQVKQKIRK 66

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
                    K+     ++V GC  Q +      R P V  V+G     +       +   
Sbjct: 67  CH-------KDEPSKKIIVVGCGPQLDPHA-YSRMPGVFKVLGNVEKLKAENY--ASEQK 116

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
             V D   + E  F    +      RKR   AFL IQ GCD  CTFC +   RG   S  
Sbjct: 117 IAVADITDASETAFSSTMMPVVSAVRKR---AFLEIQNGCDHDCTFCAITLARGKNRSSD 173

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
              +V E RK++  G+ E+ L G ++    GK L G+      L   L+++  L RLR +
Sbjct: 174 AMTIVSEVRKIVAFGINEVVLTGVDIT-DYGKDLFGKPALVYLLKKILNDVPELKRLRLS 232

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
           +    ++SD  I+       LMP+LHL +QSG   ILK M RRHT  +  +   +I +VR
Sbjct: 233 SVDVSELSDDFIELFATEARLMPHLHLSIQSGDSIILKRMKRRHTPEQVVEFHSKILAVR 292

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           P+    +D IVGFP E+++ F  + +L+ ++       F +SP+ GT  + M  QVD  V
Sbjct: 293 PETGFGADIIVGFPTESEEMFHNSYELIKRLAIPYLHVFPFSPKKGTKAALMP-QVDGVV 351

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHN 446
           K  R   L K  +E    FN   VG I  +++E+        VGRS     V L S   +
Sbjct: 352 KKGRARKLIKLGKENLQIFNTMQVGSIHNLVLERDN------VGRSENFCLVRLGSAVSD 405

Query: 447 IGDIIKVRITDV-KISTLYGELVV 469
              II+ +IT      TL G+++ 
Sbjct: 406 DTGIIRAKITGCSDAETLSGQIIA 429


>gi|291280326|ref|YP_003497161.1| MiaB-like tRNA modifying enzyme YliG [Deferribacter desulfuricans
           SSM1]
 gi|290755028|dbj|BAI81405.1| MiaB-like tRNA modifying enzyme YliG [Deferribacter desulfuricans
           SSM1]
          Length = 449

 Score =  286 bits (733), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 102/420 (24%), Positives = 183/420 (43%), Gaps = 23/420 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC  N  D   +      + +   N+ D+AD I++NTC   E A  +    + 
Sbjct: 4   KIASVSLGCPKNQVDLEVLLGKMTDEDFMLTNNPDEADAIIINTCGFIEPAVMEAVETIL 63

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
              + K    K      ++V GC+ +    E  +  P V+   G      + + L+    
Sbjct: 64  EFESYKEKGKK------IIVTGCMVERYKNEFEKEFPFVDYYTGVGELKSVIDFLKNNSK 117

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            K+     Y  +++                  A+L I +GC   C++C +P  RG + SR
Sbjct: 118 PKQTEKNLYFSKNRVILNP----------QSFAYLKIADGCRNRCSYCTIPSIRGTQKSR 167

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            +  +++EA++LID GV E+ L+ Q+     G  + G       LL  LS ++G   +R 
Sbjct: 168 KIEDILEEAQRLIDGGVKELILISQDTT-KYGIDIYGS-FMIKPLLEKLSSLEGDFYIRT 225

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
              +P  +   LI    +   ++ Y  +P+Q  +DRILK MNR+  +   ++I   I+  
Sbjct: 226 LYLNPDGVDGELIDIILNNPKIINYFEIPIQHINDRILKLMNRKFNSSHIKKIFTLIKEK 285

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
             D  I + FIVGFP ET+++F   +D + +     A  F + P  G   S M  Q+ + 
Sbjct: 286 SEDAFIRTTFIVGFPSETEEEFNEIIDFLHEFKPDFAGFFPFYPEDGVKASTMDGQISKR 345

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-----KGKLVGRSPWLQSVVL 440
            K +R+  L+K  ++       +   + I    EK+  +     +G+ + ++P +   V 
Sbjct: 346 EKNKRVKQLEKIQKKITSERLKSLKKEKILCFAEKYNDDFDFIVEGRAIFQTPDIDGKVY 405


>gi|302343165|ref|YP_003807694.1| RNA modification enzyme, MiaB family [Desulfarculus baarsii DSM
           2075]
 gi|301639778|gb|ADK85100.1| RNA modification enzyme, MiaB family [Desulfarculus baarsii DSM
           2075]
          Length = 428

 Score =  286 bits (732), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 122/444 (27%), Positives = 208/444 (46%), Gaps = 33/444 (7%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +RF + S GC++N  ++  + D   + G+ RV      DL VL TC +   A+ +     
Sbjct: 4   KRFCLHSLGCKVNQAEAAHLADELTALGWTRVPEARRGDLAVLLTCAVTASASRQSRQMA 63

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R+        +  G   VV +GC  QA  E     +  V +VVG     +L  +++R  
Sbjct: 64  RRLA-------RVAGPESVVASGCGVQA--EAQAYLAEGV-IVVGRAELAQLARIIDRQA 113

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
           + ++        +     +  +  G  R RG+   L +Q+GC+  C +C+VP TRG   S
Sbjct: 114 WPEQ--GPPPPPDAGAFCMGALQPGELRGRGL---LKVQDGCNAGCAYCIVPATRGRPRS 168

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
             L+Q V   R +   G  EI L G ++  W G  L G K   ++LL ++       RLR
Sbjct: 169 LPLAQAVAAFRGMAQAGAQEIVLTGIHLGRW-GLDLAG-KPRLAELLEAMLAADDRPRLR 226

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
            ++    ++   L++       L P+ HLP+QSG DR+LK+M R ++A +Y Q++  + +
Sbjct: 227 LSSLESHEIEPRLVQLAAAEPRLCPHFHLPLQSGDDRVLKAMGRPYSAAQYAQVVRDLAA 286

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             P   + +D +VG PGE     R T++L++ +  +    F YSPR GT    M  +   
Sbjct: 287 ALPSPCLGADVLVGLPGEDHAAHRQTLELLESLPISYLHVFPYSPRPGTRAVEMPGRPSG 346

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
           +   +R   L++  + + ++F  + +G+ +EV++E  G      +GRS     V L    
Sbjct: 347 HEVGQRAAVLRRLGQAKHLAFLRSRIGRRLEVVVEGGG------LGRSADYCLVTLEHGP 400

Query: 445 HNIGDIIKVRITDVKISTLYGELV 468
              G+ + V         L GEL+
Sbjct: 401 P-PGERLSV---------LAGELI 414


>gi|268325056|emb|CBH38644.1| conserved hypothetical protein, UPF0004 family, radical SAM
           superfamily, TRAM family [uncultured archaeon]
          Length = 430

 Score =  286 bits (732), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 111/446 (24%), Positives = 209/446 (46%), Gaps = 50/446 (11%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + F++++GC  N  D++ M  +  + G+E V    +AD++++NTC + ++    V   L 
Sbjct: 12  KVFIETFGCTANTGDTMEMRAILRNAGHEIVE-ESEADIVIVNTCTVTKRTELNVIKRLN 70

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            ++              VVVAGC+A A+ E       +V  ++G       P  ++    
Sbjct: 71  ELKE---------RGKAVVVAGCMAAAQPE-------LVRSILGDDVAMVTPRDIQAREK 114

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            +   D                       GV A +TI +GC   CT+C+V   RG   S 
Sbjct: 115 QRLEFD-----------------------GVIAVITIAQGCIGKCTYCIVKQARGKLKSY 151

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
              ++ +  +  +++G  EI +  Q+ +A+     D        LL  ++ ++G  R+R 
Sbjct: 152 KPEKICEAVKSAVESGANEIRITSQDSSAYGWGSTD---IKLPALLEQITSVEGDFRIRV 208

Query: 266 TTSHP---RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
              +P     + D L++A  + + +  + H+PVQSGSDR+L+ M R +   ++ +I+  I
Sbjct: 209 GMMNPFTLMPILDELLEAF-NTEKIFKFFHVPVQSGSDRVLREMRRNYKVADFVEIVTNI 267

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+      IS+DFI+GFP ET++DF A++ L+++I   +    ++SPR  T  S + + +
Sbjct: 268 RARFRQSTISTDFIIGFPTETEEDFFASLYLLEEIKPEKVNITRFSPRPRTEASKLTDLL 327

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
            E  K  R             + N    G  + VL+ + GK+ G ++ R    +++VL  
Sbjct: 328 -EREKKRRSRIFSTGYHNIVFAKNKELEGAELPVLVTEPGKKGG-VIARDSAYRAIVLK- 384

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
            +  +G    VR+ + K + L  +++
Sbjct: 385 DDLPLGAHYNVRVKEAKSTYLVADIL 410


>gi|48243743|gb|AAT40846.1| hypothetical protein [Haemophilus influenzae]
          Length = 327

 Score =  286 bits (731), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 100/320 (31%), Positives = 164/320 (51%), Gaps = 22/320 (6%)

Query: 165 IVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCE 224
           +   G        A+L I EGCD  CTFC++P  RG   SRS++QV+DEA++L + GV E
Sbjct: 9   VPKQGVKLTPKHYAYLKISEGCDHRCTFCIIPSMRGDLESRSITQVLDEAKRLAEAGVKE 68

Query: 225 ITLLGQNVNAWRGK-----------GLDGE--KCTFSDLLYSLSEIKGLVRLRYTTSHPR 271
           + ++ Q+ +A+                +G   K     L   L ++   VRL Y   +P 
Sbjct: 69  LLVVSQDTSAYSMDLKRQEGGVKTAFWNGMPIKNDLMTLCKQLGKLGIWVRLHYVYPYPH 128

Query: 272 DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAI 331
                 + A G    L+PYL +P+Q  S +ILK+M R  +     + I + R + PD+ +
Sbjct: 129 VDDLIPLMADGT---LLPYLDIPLQHASPKILKAMKRPGSIDRTLERIKQWREICPDLTL 185

Query: 332 SSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERL 391
            S FI+GFPGET++DF+  +D + +    +   FK+SP  G P ++M +QV E+VK ER 
Sbjct: 186 RSTFILGFPGETEEDFQLLLDFLKEAQLDRVGCFKFSPVEGAPATDMADQVPEDVKEERF 245

Query: 392 LCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPWLQSVVLNSK----NH 445
               +  +E   +     +G+ ++VL+++  +E   G+    +P +  +V        N 
Sbjct: 246 HRFMQLQQEISANRLKQKIGKTLDVLVDEIDEEGIIGRSKADAPEVDGLVYVDNLSGINV 305

Query: 446 NIGDIIKVRITDVKISTLYG 465
            +GD+IKV IT+     L+G
Sbjct: 306 KVGDVIKVTITNSDEYDLWG 325


>gi|322379262|ref|ZP_08053648.1| radical SAM domain-containing protein [Helicobacter suis HS1]
 gi|322379873|ref|ZP_08054160.1| radical SAM protein [Helicobacter suis HS5]
 gi|321147708|gb|EFX42321.1| radical SAM protein [Helicobacter suis HS5]
 gi|321148299|gb|EFX42813.1| radical SAM domain-containing protein [Helicobacter suis HS1]
          Length = 440

 Score =  286 bits (731), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 96/453 (21%), Positives = 194/453 (42%), Gaps = 35/453 (7%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + ++ S GC  N+ DS  M        Y+    ++ AD+I++NTC   + A E+    L 
Sbjct: 12  KLYLVSLGCSKNLVDSEVMLGRL--ANYDLTQEINLADVIIINTCGFIQAAKEESVRVLL 69

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL--ERA 143
              N +          LVV +GC+++   +++    P +++  G   Y R+  LL  +++
Sbjct: 70  EAINGRKE------GALVVASGCLSERYKKQLAAELPEIDIFTGVGDYDRIDALLTSKQS 123

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           +F KRV             L+           V A++ + EGC++ C+FC +P  +G   
Sbjct: 124 QFSKRV------------FLAGEQKRTITGSKVHAYVKLSEGCNQNCSFCAIPSFKGRLQ 171

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           S+S+ +++ E   L   G  +I+ + Q+ +++        K     L+ ++   + +   
Sbjct: 172 SKSIERILKEVEILAKQGFSDISFIAQDSSSYLLD--QNVKDGLIKLIKAIDTQQMIKSA 229

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R    +P   +  LI++  +  +   Y  +P+Q  SDR+LK+M R      + ++++ + 
Sbjct: 230 RIFYLYPTSTTLELIESIANSPIFANYFDMPIQHISDRMLKTMRRNSNKANHLKLLEAMH 289

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           +  P+  + +  ++G P E   D     D +    + +   F +S    T       Q+ 
Sbjct: 290 A-IPNRFLRTTLLLGHPHENSSDIEELQDFLQSFSFDRINLFAFSAEENTAAYKWP-QLS 347

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSP----WLQSVV 439
           +   + RL  +   + +Q  +     VGQ +EV++E   ++   L  R       +   +
Sbjct: 348 QEDISARLDQINPLIEQQVQNSMQGLVGQTLEVIVEGLSEDGLFLKARDRRWGLEIDGEI 407

Query: 440 LNSKNHN----IGDIIKVRITDVKISTLYGELV 468
           L +++       G   KV     K   L G +V
Sbjct: 408 LINESLLDKIPPG-YYKVLCHTYKEGVLLGRIV 439


>gi|296114905|ref|ZP_06833553.1| MiaB-like tRNA modifying enzyme [Gluconacetobacter hansenii ATCC
           23769]
 gi|295978611|gb|EFG85341.1| MiaB-like tRNA modifying enzyme [Gluconacetobacter hansenii ATCC
           23769]
          Length = 416

 Score =  286 bits (731), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 122/445 (27%), Positives = 198/445 (44%), Gaps = 33/445 (7%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++  + ++GC++N Y+S  M     + G +        +++++NTC +  +A  +    +
Sbjct: 2   KKPEILTFGCRLNTYESEVMRT--HAAGLD--------NVVIVNTCAVTAEAERQARQAV 51

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R         ++  D  +VV GC AQ + +      P V  V+G +         E A 
Sbjct: 52  RRAH-------RDRPDARIVVTGCAAQIDPDR-WAALPGVTRVLGNREKLAAESWSEAAL 103

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
                V    +  +    L     G  R     AF+ +Q+GCD  CTFC++P+ RG   S
Sbjct: 104 SQGNAVSDIMAARESAPHLVTEFAGRTR-----AFVEVQQGCDHRCTFCIIPFGRGPSRS 158

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
             +  VV++ R L+ +G  E+ + G ++ +W G  L G+          L+ +  L RLR
Sbjct: 159 VPVGVVVEQVRALVASGYREVVMTGVDITSW-GGDLPGQPSLGQLCRRLLALVPELERLR 217

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
            ++  P ++ D L +        MPYLHL +Q+GSD ILK M RRH  ++   +I R R 
Sbjct: 218 LSSVDPVEIDDGLWQLLEHEPRFMPYLHLSLQAGSDMILKRMKRRHLTHDVAAVIARARG 277

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           +RPDI I +D I GFP E +  F  T+D +          F YS R GTP + M   +  
Sbjct: 278 LRPDIGIGADVIAGFPTEDEALFNETLDFIAGQALPYLHVFPYSERPGTPAARMP-AIPM 336

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK- 443
             + ER   L+    +   +++   +G+ + VL+E       +  G S     V L    
Sbjct: 337 AQRRERAARLRAVGAQAARTYHAGLLGRPLRVLME------TQTSGHSEEFAPVRLADGV 390

Query: 444 -NHNIGDIIKVRITDVKISTLYGEL 467
                G I  VR      + L  EL
Sbjct: 391 APSQAGRIETVRPVAFDDNGLVAEL 415


>gi|149186851|ref|ZP_01865161.1| hypothetical protein ED21_25472 [Erythrobacter sp. SD-21]
 gi|148829518|gb|EDL47959.1| hypothetical protein ED21_25472 [Erythrobacter sp. SD-21]
          Length = 391

 Score =  285 bits (730), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 110/425 (25%), Positives = 189/425 (44%), Gaps = 50/425 (11%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V S GC++N+ +S R+  M   +           +L+V+N+C +  +A  +    + + R
Sbjct: 6   VVSLGCRLNLSESERIRAMLAGED----------NLVVVNSCAVTSEAVRQTRQAIRQAR 55

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
                  K   +  ++V GC A  E +++    P V+  +             +A+   R
Sbjct: 56  -------KANPEARLLVTGCAADIERDQLAA-MPEVDGFIAN-----------KAKLDPR 96

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
             +   S          V   + R     AF+ +Q GCD  CTFCV+P  RG   S +++
Sbjct: 97  AWNVPASA-------PPVQALHTR-----AFVAVQNGCDHACTFCVIPQGRGKSRSLTVA 144

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
           +V+ E    +D G  E+ L G +V +W G  L G     + +   L     L R+R ++ 
Sbjct: 145 EVLREVESHLDTGAGEVVLTGVDVTSW-GHDLPGSLRLGALIRAVLDAFPALTRIRMSSI 203

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
              ++ + L +       +MP++HL +Q G D ILK M RRH   +   ++ R+++ RPD
Sbjct: 204 DGIEVDEELFELFAGEPRVMPHIHLSLQHGHDLILKRMKRRHLRADAVDLVARLKACRPD 263

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           + + +D I GFP ET++   + + ++ ++       F YSPR GTP + M  QV+     
Sbjct: 264 LVVGADLIAGFPTETEEHHASNLSIIRELAILHGHIFPYSPRPGTPAARMP-QVERPTIK 322

Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIG 448
            R   L+ ++ + +  +    V +   VL E  G       G SP    V L       G
Sbjct: 323 RRAAELRAEVAKLRAEWLRTLVDKPHSVLAEADG------TGYSPHFARVKLPEGIPR-G 375

Query: 449 DIIKV 453
            I+ V
Sbjct: 376 SIVTV 380


>gi|313125740|ref|YP_004036010.1| miab-like tRNA modifying enzyme [Halogeometricum borinquense DSM
           11551]
 gi|312292105|gb|ADQ66565.1| MiaB-like tRNA modifying enzyme [Halogeometricum borinquense DSM
           11551]
          Length = 417

 Score =  285 bits (730), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 113/449 (25%), Positives = 202/449 (44%), Gaps = 40/449 (8%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R+ +++YGC  N  +S  +E      G+ RV   ++AD+ ++NTC + EK      + L 
Sbjct: 3   RYHIETYGCTSNRGESRAIESALRDAGHYRVEEPEEADVAIMNTCTVVEKTE---RNMLR 59

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R + L+           +++ GC+A A+GEE       V+  +                 
Sbjct: 60  RAKELEEE------TADLIITGCMALAQGEEF--HEEDVDAQILHW-------------- 97

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                D   S     E  +   G      GV   L I  GC   C++C+  +  G   S 
Sbjct: 98  -----DDVPSAVTNGECPTPGPGTEPVLDGVVGILPIARGCMSNCSYCITKFATGRVDSP 152

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            + + V++AR L+  G  EI + GQ+     G    G++     L    SEI+G  R+R 
Sbjct: 153 PVEENVEKARALVHAGAKEIRITGQDTG-VYGWD-KGDRKLPELLDRICSEIEGDFRVRL 210

Query: 266 TTSHP---RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
             ++P     + + L++     D L  ++HLPVQSGSD +L++M R+H   ++ +I++  
Sbjct: 211 GMANPGGIHGIHEELVEVFDRHDKLYNFIHLPVQSGSDTVLEAMRRQHRVDKFVEIVETF 270

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
                   +S+DFIVGFP ET+ D   +M L  ++   +    ++S R GT  ++M   +
Sbjct: 271 DETLDYWTLSTDFIVGFPTETEADHEQSMALFREVRPEKVNVTRFSKRPGTDAADMKG-L 329

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL-N 441
              VK ER   + +   +      ++ +G+   V++ + G     +  R    + +++ N
Sbjct: 330 GGTVKKERSKEMSELKMDIVAEAYESMIGETHRVMVVREGT-GDSVKCRDEAYRQIIVQN 388

Query: 442 SKNHNI--GDIIKVRITDVKISTLYGELV 468
           +  H I  GD + V +T  +    +G+ V
Sbjct: 389 ASEHGIEPGDFLDVEVTSHQTVYAFGKPV 417


>gi|189345895|ref|YP_001942424.1| RNA modification enzyme, MiaB family [Chlorobium limicola DSM 245]
 gi|189340042|gb|ACD89445.1| RNA modification enzyme, MiaB family [Chlorobium limicola DSM 245]
          Length = 458

 Score =  285 bits (730), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 129/474 (27%), Positives = 218/474 (45%), Gaps = 40/474 (8%)

Query: 18  VDQCIVPQR---FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIRE 74
           +D  +  +R       + GC++N  ++  + D   ++G++  +    AD+I+++TC +  
Sbjct: 1   MDDALYAKRSPSVAAVTMGCKLNYSETSAILDRLSAEGWKLSSLDAGADMIIIHTCSVTS 60

Query: 75  KAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYY 134
           +A +K        R      I+   + +VVV GC AQ +   +L     V  V+G    +
Sbjct: 61  QAEQKC-------RQKIRRIIRRHPESVVVVIGCYAQLQPA-LLAGIKGVAAVLGSSDKF 112

Query: 135 ---RLPELLERARFGK--RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKF 189
                 ELL++ +     RV D   +          VD G  R R   AFL IQ+GCD  
Sbjct: 113 VTATYRELLDQKQTFPLARVSDIGSTETVFPGYSLSVDEGEARTR---AFLKIQDGCDYA 169

Query: 190 CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSD 249
           C +C +P+ RG   S    ++V  AR L  +G  EI L G N+  +RG            
Sbjct: 170 CAYCTIPHARGRSRSLPSEELVARARSLAFSGYREIVLTGVNIGDYRGHA-----SGLVG 224

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
           LL  L ++  + R+R ++  P  + D LI+       + P+ H+P+QSGSD ILK+M RR
Sbjct: 225 LLRMLEDV-SVDRIRISSLEPDILDDELIETVAASKKITPHFHVPLQSGSDSILKAMRRR 283

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369
           +T   YR+ + R      D AI +D I G+PGE+++DF      ++ +  A    F  S 
Sbjct: 284 YTTESYREKLVRAVGAISDCAIGADVIAGYPGESEEDFMQMYRFIEGLPIAYLHVFTCSV 343

Query: 370 RLGTP-GSNM---LEQVDENVK-AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE 424
           R GT   + +     ++   V+   R   L +  + +   ++   +G+  E+L+E   +E
Sbjct: 344 RPGTVLAAQLAADERRLPSPVELDRRSRLLIELGKRKTEEYSGKFIGRECEILVEASLRE 403

Query: 425 K-GKLV--GRSPWLQSVV-----LNSKNHNI-GDIIKVRITDVKIS-TLYGELV 468
           K G+LV  G +     V            ++ G ++ VRI  +     L+G L+
Sbjct: 404 KSGRLVCSGYTAHYLHVTAEAGCFEGNTADLKGRLLPVRIAHMDDDLNLHGRLL 457


>gi|283955058|ref|ZP_06372561.1| LOW QUALITY PROTEIN: MiaB-like tRNA modifying enzyme YliG
           [Campylobacter jejuni subsp. jejuni 414]
 gi|283793425|gb|EFC32191.1| LOW QUALITY PROTEIN: MiaB-like tRNA modifying enzyme YliG
           [Campylobacter jejuni subsp. jejuni 414]
          Length = 416

 Score =  285 bits (729), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 102/405 (25%), Positives = 190/405 (46%), Gaps = 21/405 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + ++ S GC  N+ DS  M     +  YE  +    AD++++NTC   + A ++  + + 
Sbjct: 3   KLYLVSLGCNKNLVDSEIMLGRLSA--YELCDEPSKADVLIVNTCGFIDSAKKESINAIL 60

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +   +        D L+VV GC+ Q   EE+++  P V++  G   Y R+ E++   + 
Sbjct: 61  DLHEQRKK------DSLLVVTGCLMQRYREELMKELPEVDLFTGVGDYERIDEMI--LKK 112

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                ++ Y   +  +R+      +       AF+ I EGC++ C+FC +P  +G   SR
Sbjct: 113 TNLFSNSTYLQSENSKRIITGSNSH-------AFIKIAEGCNQKCSFCAIPSFKGKLKSR 165

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            +S ++ E + L+  G  + + + Q+ +++      GEK     L+  + +I+G+   R 
Sbjct: 166 EISSIIAELKDLVARGYKDFSFIAQDTSSYLFD--KGEKDGLIRLIDEVEKIQGIRAARI 223

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
              +P   S+ LIK     ++ + Y  +P+Q  SD +LK M R   +   ++I++ ++S 
Sbjct: 224 LYLYPTSASEALIKRIIASEIFVNYFDMPLQHISDNMLKIMKRGANSTRLKEILNLMKSA 283

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P+  + + FIVG PGE++ DF    + V   G+ +   F YS    T   +M EQV   
Sbjct: 284 -PNSFLRTGFIVGHPGESEADFEELCEFVKDFGFDRVSVFAYSKEEDTAAFDM-EQVPFK 341

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG 430
           V  +RL  ++K + E      +  V Q   V+      E    + 
Sbjct: 342 VINKRLKIIEKIVDEVIEKSFEKEVEQKRLVVCTGESSEGEFFIA 386


>gi|302338031|ref|YP_003803237.1| MiaB-like tRNA modifying enzyme [Spirochaeta smaragdinae DSM 11293]
 gi|301635216|gb|ADK80643.1| MiaB-like tRNA modifying enzyme [Spirochaeta smaragdinae DSM 11293]
          Length = 453

 Score =  285 bits (729), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 134/465 (28%), Positives = 219/465 (47%), Gaps = 39/465 (8%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDD--ADLIVLNTCHIREKAAEKVYSF 83
           R    + GC++N  +S  +   F  +G+  V       A++ V+N+C +  KA +K    
Sbjct: 2   RVSFFTLGCKLNQSESEALATAFGRRGFSLVPPSAKGKAEVFVVNSCTVTSKAEQK---- 57

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVV--VGPQTYYRLPELLE 141
               R +  S  +     +V+V GC AQ + +++      V V+      +   LPE LE
Sbjct: 58  ---ARRMIRSFARNNPLSVVLVTGCYAQMDPDQVAALGENVVVLPLSAKASILDLPEFLE 114

Query: 142 RARFGKRVVDT---------------DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGC 186
            A  G  ++D                D S  D+F           R RG   FL IQ+GC
Sbjct: 115 SAAGGYTLLDAVQSFAREKSAAAFAGDPSASDRFRFEISGAEKSGRSRG---FLKIQDGC 171

Query: 187 DKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT 246
           D  CT+C V   RG  +S + S+V+  A  L D G  EI L G N+ AW+   L      
Sbjct: 172 DNACTYCRVRLARGPSVSLASSEVLRRAAALADEGFGEIVLTGVNLTAWQEGDL-----R 226

Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306
           F+DLL  ++      R+R +++ P  + + L  A      + P+ HLPVQSGSD +L S+
Sbjct: 227 FADLLALMTSDSRAYRIRLSSTEPDAIDEKLASA-ASSPRVRPHFHLPVQSGSDTVLASV 285

Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
            R +TA +  + +  +R  + D  +++D IVG PGE+D DF AT+ LV++ G+A   +F 
Sbjct: 286 GRHYTADDVLRAVALLRKAKEDPFLAADIIVGLPGESDADFEATLSLVERCGFAHIHAFP 345

Query: 367 YSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG 426
           +SPR GTP      +V E + AER++ + +   +   SF     G   E +IE+   E G
Sbjct: 346 FSPRPGTPLYTARGRVPERIAAERMVEIGRLSSQLHASFVARRAGSQEEAVIERL-PENG 404

Query: 427 KLVGRSPWLQSVVLNS--KNHNIGDIIKVRIT-DVKISTLYGELV 468
           + +  +     +  ++   +   GD+ +V +  +    +L    +
Sbjct: 405 QALVLTDRYLHLPCDAIPPSEKRGDLCRVLLDYEPDSESLRATFI 449


>gi|293977855|ref|YP_003543285.1| MiaB family RNA modification protein [Candidatus Sulcia muelleri
           DMIN]
 gi|292667786|gb|ADE35421.1| RNA modification enzyme, MiaB family [Candidatus Sulcia muelleri
           DMIN]
          Length = 429

 Score =  285 bits (729), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 113/442 (25%), Positives = 208/442 (47%), Gaps = 32/442 (7%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    + GC++N  ++  + + F  +GYE V  +  ADL ++NTC + + A +       
Sbjct: 4   KVAFYTLGCKLNFAETDTIINKFLKKGYEYVKFISYADLYIINTCSVTKNAEK------- 56

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            ++ L    I    +  +V  GC +Q   +EI      +++++G +  + +   L++   
Sbjct: 57  ELKKLVRIAINNNVNAFIVAIGCYSQVNPKEI-SLINGIDLIIGSKEKFNIINHLKKIYK 115

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            K +     S++DK   +      Y+R     ++L IQ+GCD  C++C +P  RG  IS 
Sbjct: 116 NKFI-----SLKDKNIYIP----SYSRLNRTRSYLKIQDGCDYKCSYCTIPKARGFSISD 166

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL------SEIKG 259
           ++  ++  A+ LI  G+ EI L G N+        D  K    +L+ ++       +IK 
Sbjct: 167 NIKNIIFYAKNLIKQGIKEIVLTGVNIG-------DYGKHNLLELIQAMESSLNEDDIKN 219

Query: 260 -LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
            + R+R ++  P  +SD +I       + + + H+P+QSGSD IL  M RR++   Y + 
Sbjct: 220 FIKRIRISSIEPNLLSDDIINFIYKSKIFVNHFHIPLQSGSDEILNQMKRRYSKNLYLER 279

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           I +I ++ P   I SD IVGFPGE + +F  T  L+ +I  +    F YS R+ T    M
Sbjct: 280 IKKILNIMPFACIGSDVIVGFPGEKEKNFIETYSLLSEINISYLHVFSYSERINTKAFIM 339

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSV 438
              + + ++ +R     +  +E++  F    + +   VL E   K  G + G +      
Sbjct: 340 NNSITKKIRYKRNKIFIRLSKEKKKKFYIKQINKKSNVLFENKNK-SGYIYGYTDNYIRT 398

Query: 439 VLNSKNHNIGDIIKVRITDVKI 460
               K+  + +I  V + +V  
Sbjct: 399 KTIWKSDLVNNIKNVTLLNVDD 420


>gi|161833745|ref|YP_001597941.1| putative MiaB-like protein [Candidatus Sulcia muelleri GWSS]
 gi|152206235|gb|ABS30545.1| putative MiaB-like protein [Candidatus Sulcia muelleri GWSS]
          Length = 429

 Score =  283 bits (725), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 112/442 (25%), Positives = 207/442 (46%), Gaps = 32/442 (7%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    + GC++N  ++  + + F  +GYE V  +  ADL ++NTC + + A +       
Sbjct: 4   KVAFYTLGCKLNFAETDTIINKFLKKGYEYVKFISYADLYIINTCSVTKNAEK------- 56

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            ++ L    I    +  +V  GC +Q   +EI      +++++G +  + +   L++   
Sbjct: 57  ELKKLVRIAINNNVNAFIVAIGCYSQVNPKEI-SLINGIDLIIGSKEKFNIINHLKKIYK 115

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            K       S++DK   +      Y+R     ++L IQ+GCD  C++C +P  RG  IS 
Sbjct: 116 KK-----FLSLKDKNIYIP----SYSRLNRTRSYLKIQDGCDYKCSYCTIPKARGFSISD 166

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL------SEIKG 259
           ++  ++  A+ +I  G+ EI L G N+        D  K    +L+ ++       +IK 
Sbjct: 167 NIKNIIFYAKNIIKQGIKEIVLTGVNIG-------DYGKHNLLELIQAMESSLNEDDIKN 219

Query: 260 -LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
            + R+R ++  P  +SD +I       + + + H+P+QSGSD IL  M RR++   Y + 
Sbjct: 220 FIKRIRISSIEPNLLSDDIINFIYKSKIFVNHFHIPLQSGSDEILNKMKRRYSKNLYLER 279

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           I +I ++ P   I SD IVGFPGE + +F  T  L+ +I  +    F YS R+ T    M
Sbjct: 280 IKKILNIMPFACIGSDVIVGFPGEKEKNFIETYSLLSEINISYLHVFSYSERINTKAFIM 339

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSV 438
              + + ++ +R     +  +E++  F    + +   VL E   K  G + G +      
Sbjct: 340 NNSITKKIRYKRNKIFIRLSKEKKKKFYIKQINKKSNVLFENKNK-SGYIYGYTDNYIRT 398

Query: 439 VLNSKNHNIGDIIKVRITDVKI 460
               K+  + +I  V + +V  
Sbjct: 399 KTIWKSDLVNNIKNVTLLNVDD 420


>gi|296284753|ref|ZP_06862751.1| hypothetical protein CbatJ_14083 [Citromicrobium bathyomarinum
           JL354]
          Length = 391

 Score =  283 bits (724), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 121/432 (28%), Positives = 183/432 (42%), Gaps = 53/432 (12%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V S GC++N  +S R+  +  +Q           DL+V+N+C +  +A       + R R
Sbjct: 6   VISLGCRLNHAESERIAALVEAQ----------PDLVVVNSCSVTREAVRHTRQAIRRAR 55

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
                  K      ++V GC A+ E E +      V+  V  Q                 
Sbjct: 56  -------KAHPAARLLVTGCAAETEREAL-GAMDEVDGFVANQAKLDARSW--------- 98

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
                                  R++G  AF+ +Q GCD  CTFC +P  RG   S  ++
Sbjct: 99  --------------NVPEPRVALRQQGTRAFVGVQNGCDHACTFCSIPAGRGTSRSDEIA 144

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
            V+      +  G  E+ L G ++ +W G  L GE    + +   L+E   L RLR ++ 
Sbjct: 145 TVLRAVEARLIEGTQEVVLTGVDLTSW-GHDLPGEPRLGALVSAILNEFPQLPRLRLSSV 203

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
              ++ D L         +MP+LHL +Q GSD ILK M RRH   +   ++ R+++ RP+
Sbjct: 204 DGIEIDDALFDLIAGEPRVMPHLHLSLQHGSDLILKRMKRRHLRGDAVDLVARLKARRPE 263

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           IAI +D I GFP ETD      + ++ + G      F YSPR GTP + M  QVD     
Sbjct: 264 IAIGADLIAGFPTETDAHHADNLSIIAECGIVHGHIFPYSPRAGTPAARMP-QVDVATIK 322

Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIG 448
            R   L+  +R  +  +  + +GQ   VL EK G       G +P    V L       G
Sbjct: 323 ARAAELRTAVRRTRDGWLASLIGQRHTVLAEKDG------SGYTPHFARVALPEGTA-PG 375

Query: 449 DIIKV---RITD 457
            I  +   RI +
Sbjct: 376 TIASITPTRIIE 387


>gi|218294853|ref|ZP_03495707.1| MiaB-like tRNA modifying enzyme [Thermus aquaticus Y51MC23]
 gi|218244761|gb|EED11285.1| MiaB-like tRNA modifying enzyme [Thermus aquaticus Y51MC23]
          Length = 435

 Score =  283 bits (724), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 120/445 (26%), Positives = 205/445 (46%), Gaps = 27/445 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVN-SMDDADLIVLNTCHIREKAAEKVYSFL 84
           R   ++ GC++N  ++  +     +   E V      ADL+V+NTC +   A       +
Sbjct: 2   RAAFRTLGCKVNQVETEALLGFLKALEPEVVPVEAGGADLVVINTCAVTTTAEADARKEI 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R R       +   +  +VV GC A+   EE+       + VV       LP+++   R
Sbjct: 62  RRAR-------RHNPEAFIVVTGCYAELSPEEVEAL--GADAVVPNARKAELPKVILE-R 111

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
           FG   + +D       E     + G    R V AFL +Q+GC   C +C++P  RG E  
Sbjct: 112 FG---LPSDPITTPPNEFWGAGERGLLNSR-VRAFLKVQDGCQAGCAYCIIPRLRGKERH 167

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R   + + EA  L+  G+ EI L G  + ++R     G     + L+  L  +   VRL 
Sbjct: 168 RDYREALAEAEALLRVGIKEIVLTGVRLGSYR-----GHPRGLAGLVEDLYHLGAKVRL- 221

Query: 265 YTTSHPRDMSDCLIKAHGDL-DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
            ++  P D  + L++        + P+LHL +Q+GSDR+LK M RR+    YR ++ R  
Sbjct: 222 -SSIEPEDTGEDLLRVIARYAPEVRPHLHLSLQTGSDRLLKLMGRRYDKAYYRALVQRAY 280

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
            + P  A+++D I G P ET+++ R T+  ++++   +  +F Y+PR  T  ++M  QV 
Sbjct: 281 ELIPGFALTTDVIAGLPTETEEEHRETLAFLEELRPTRVHAFTYTPRPKTRAASMP-QVP 339

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
             V+  R   L    +          +G  +EVL+E+  ++ G L+G +P      L   
Sbjct: 340 IEVRKRRTRELIALAQRLAEERIRPKLGGEVEVLVER--RQGGFLLGHTPDYYEARLEG- 396

Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468
               G+ + + +  V+  TL G +V
Sbjct: 397 QALPGETVLMAVEGVEGYTLLGRVV 421


>gi|193084232|gb|ACF09895.1| MiaB-like tRNA modifying enzyme [uncultured marine crenarchaeote
           AD1000-23-H12]
          Length = 422

 Score =  283 bits (724), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 113/445 (25%), Positives = 204/445 (45%), Gaps = 26/445 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +  V+SYGC  N+ D+  +  +   +GY  +N+  D+DL V+ TC +++    K+   + 
Sbjct: 2   KVHVESYGCSANIADAEMISGLLSQKGYNVLNNDPDSDLNVIVTCTVKDPTFNKMVKRIK 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +               +++AGC+ + E ++IL+ +   ++ + P + +   +  + A  
Sbjct: 62  SL---------SSTGKPLIIAGCMPKTELDKILQINDQASL-LDPGSVHLAVDAAKAALA 111

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G++         +K      V     R   V     + +GC   CTFC V + RG  +S 
Sbjct: 112 GEKFESISSKRSNK------VLLPRLRSNPVVHIAEVSQGCLSKCTFCQVKFARGGLVSY 165

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
               +V E  + + +G  EI L  Q++    GK +   K +  +LL  + +I G   +R 
Sbjct: 166 RPLDIVREIEQAVIDGCREIWLTSQDIG-CYGKDI---KTSLPELLNIICDIDGDFMVRV 221

Query: 266 TTSHPRDMSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
              +P  + + +           +  +LH+PVQSGSD ILK M R H+  ++   + + R
Sbjct: 222 GMMNPMHLDEIIDDLITSYMDPKIFKFLHIPVQSGSDEILKLMKRMHSVNDFELTVKKFR 281

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           +  P+I++S+D IVGFP ETD  F+ T+DLV +I +      ++  R GT   +    + 
Sbjct: 282 NAFPNISLSTDIIVGFPDETDLQFQETLDLVRRINFDTVNISRFGSRPGTEAYSKP-ILP 340

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
             +  ER   +    +    S N   VG   +  I K+ K     V R+P  + V+L + 
Sbjct: 341 HKIVKERSKLMHTVAKSTSHSRNKIWVGWKGKSTIVKNVKNAQ--VARNPSYKPVILKT- 397

Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468
           N  +G  +   I +   + L G L+
Sbjct: 398 NLPLGSSVNTEIVNYSANCLVGTLI 422


>gi|289432755|ref|YP_003462628.1| MiaB-like tRNA modifying enzyme [Dehalococcoides sp. GT]
 gi|288946475|gb|ADC74172.1| MiaB-like tRNA modifying enzyme [Dehalococcoides sp. GT]
          Length = 416

 Score =  283 bits (724), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 114/434 (26%), Positives = 193/434 (44%), Gaps = 33/434 (7%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
             + + GC++N  ++  M   F   GY  V+  D+ D+ +LNTC +   A  K    +  
Sbjct: 4   IALDTLGCKLNQAETEAMGREFAQAGYHLVSPQDNWDIYILNTCTVTHVADRKARYQMRI 63

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
            R       +      + + GC A+    EI    P  N+++  +    +   + R    
Sbjct: 64  AR-------RHNPSGFICLTGCYAENGENEISC--PDANLILDNRQKTDIVNNIVRLFPL 114

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           +      Y                  K    +F+ IQ+GCD FCT+C+VP+ R  +  R 
Sbjct: 115 ENSASALYE-----------------KGRTRSFIKIQDGCDNFCTYCIVPFVRRYKNCRG 157

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
           +  ++ E       G  EI L G  +  +   G +      + L+ ++ E   + RLR +
Sbjct: 158 VDDIISEINLRQAEGYQEIVLTGTEIGEYTSSGFN-----LAGLIEAILERTRIPRLRLS 212

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
           +  P +++  L+ A      L  + H+ +QSGSDRIL  MNR ++  +Y + ++ IR   
Sbjct: 213 SLQPNEITLPLL-ALWKNRRLCNHFHMALQSGSDRILGLMNRSYSLTDYTRTLEAIRRQI 271

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           PD+A+++D IVGFPGETD+DF  ++  V++ G+A+   F YS R GT  S + ++VD  V
Sbjct: 272 PDVAVTTDTIVGFPGETDEDFACSLKYVEQAGFARVHPFPYSERPGTMASQLTDKVDPVV 331

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHN 446
              RL  +    +   + +         EVL E   K+ G   G +P    V        
Sbjct: 332 IKTRLSGMMLAAKNASLEYRHQSRDLEKEVLWENKMKD-GLWFGYTPDYIRVYGKFTEKP 390

Query: 447 IGDIIKVRITDVKI 460
              I +V++  V  
Sbjct: 391 TNTISRVKLAKVYA 404


>gi|34535972|dbj|BAC87494.1| unnamed protein product [Homo sapiens]
          Length = 487

 Score =  282 bits (723), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 100/417 (23%), Positives = 187/417 (44%), Gaps = 38/417 (9%)

Query: 53  YERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQA 112
           ++   +  DADL +LN+C ++  A +   + + + +              +V+AGCV QA
Sbjct: 22  HQVTENASDADLWLLNSCTVKNPAEDHFRNSIKKAQEENKK---------IVLAGCVPQA 72

Query: 113 EGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVED-KFERLSIVDGGYN 171
           +  +   +      ++G Q   R+ E++E    G  V       ++ +    + +D    
Sbjct: 73  QPRQDYLKG---LSIIGVQQIDRVVEVVEETIKGHSVRLLGQKKDNGRRLGGARLDLPKI 129

Query: 172 RKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQN 231
           RK  +   ++I  GC   CT+C   + RG   S  + ++VD A++    GVCEI L  ++
Sbjct: 130 RKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELVDRAKQSFQEGVCEIWLTSED 189

Query: 232 VNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL 291
             A  G+ +     T    L  +     ++RL  T           +    +   +  +L
Sbjct: 190 TGA-YGRDIGTNLPTLLWKLVEVIPEGAMLRLGMTNPPYILEHLEEMAKILNHPRVYAFL 248

Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351
           H+PVQS SD +L  M R +   ++++++D ++   P I I++D I GFPGETD DF+ T+
Sbjct: 249 HIPVQSASDSVLMEMKREYCVADFKRVVDFLKEKVPGITIATDIICGFPGETDQDFQETV 308

Query: 352 DLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVG 411
            LV++  +   F  ++ PR GTP + M EQV   V                       +G
Sbjct: 309 KLVEEYKFPSLFINQFYPRPGTPAAKM-EQVPAQV-----------------------IG 344

Query: 412 QIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           +  +VL+ +   +    V  + + + V++      +G +++V I +     + G+ V
Sbjct: 345 ERQQVLVTEESFDSKFYVAHNQFYEQVLVPKNPAFMGKMVEVDIYESGKHFMKGQPV 401


>gi|114605656|ref|XP_001171067.1| PREDICTED: hypothetical protein isoform 1 [Pan troglodytes]
          Length = 488

 Score =  282 bits (723), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 100/417 (23%), Positives = 187/417 (44%), Gaps = 38/417 (9%)

Query: 53  YERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQA 112
           ++   +  DADL +LN+C ++  A +   + + + +              +V+AGCV QA
Sbjct: 22  HQVTENASDADLWLLNSCTVKNPAEDHFRNSIKKAQEENKK---------IVLAGCVPQA 72

Query: 113 EGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVED-KFERLSIVDGGYN 171
           +  +   +      ++G Q   R+ E++E    G  V       ++ +    + +D    
Sbjct: 73  QPRQDYLKG---LSIIGVQQIDRVVEVVEETIKGHSVRLLGQKKDNGRRLGGARLDLPKI 129

Query: 172 RKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQN 231
           RK  +   ++I  GC   CT+C   + RG   S  + ++VD A++    GVCEI L  ++
Sbjct: 130 RKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELVDRAKQSFQEGVCEIWLTSED 189

Query: 232 VNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL 291
             A  G+ +     T    L  +     ++RL  T           +    +   +  +L
Sbjct: 190 TGA-YGRDIGTNLPTLLWKLVEVIPEGAMLRLGMTNPPYILEHLEEMAKILNHPRVYAFL 248

Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351
           H+PVQS SD +L  M R +   ++++++D ++   P I I++D I GFPGETD DF+ T+
Sbjct: 249 HIPVQSASDSVLMEMKREYCVADFKRVVDFLKEKVPGITIATDIICGFPGETDQDFQETV 308

Query: 352 DLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVG 411
            LV++  +   F  ++ PR GTP + M EQV   V                       +G
Sbjct: 309 KLVEEYKFPSLFINQFYPRPGTPAAKM-EQVPAQV-----------------------IG 344

Query: 412 QIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           +  +VL+ +   +    V  + + + V++      +G +++V I +     + G+ V
Sbjct: 345 ERQQVLVTEESFDSKFYVAHNQFYEQVLVPKNPAFMGKMVEVDIYESGKHFMKGQPV 401


>gi|119575831|gb|EAW55427.1| CDK5 regulatory subunit associated protein 1-like 1, isoform CRA_c
           [Homo sapiens]
          Length = 488

 Score =  282 bits (722), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 100/417 (23%), Positives = 187/417 (44%), Gaps = 38/417 (9%)

Query: 53  YERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQA 112
           ++   +  DADL +LN+C ++  A +   + + + +              +V+AGCV QA
Sbjct: 22  HQVTENASDADLWLLNSCTVKNPAEDHFRNSIKKAQEENKK---------IVLAGCVPQA 72

Query: 113 EGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVED-KFERLSIVDGGYN 171
           +  +   +      ++G Q   R+ E++E    G  V       ++ +    + +D    
Sbjct: 73  QPRQDYLKG---LSIIGVQQIDRVVEVVEETIKGHSVRLLGQKKDNGRRLGGARLDLPKI 129

Query: 172 RKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQN 231
           RK  +   ++I  GC   CT+C   + RG   S  + ++VD A++    GVCEI L  ++
Sbjct: 130 RKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELVDRAKQSFQEGVCEIWLTSED 189

Query: 232 VNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL 291
             A  G+ +     T    L  +     ++RL  T           +    +   +  +L
Sbjct: 190 TGA-YGRDIGTNLPTLLWKLVEVIPEGAMLRLGMTNPPYILEHLEEMAKILNHPRVYAFL 248

Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351
           H+PVQS SD +L  M R +   ++++++D ++   P I I++D I GFPGETD DF+ T+
Sbjct: 249 HIPVQSASDSVLMEMKREYCVADFKRVVDFLKEKVPGITIATDIICGFPGETDQDFQETV 308

Query: 352 DLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVG 411
            LV++  +   F  ++ PR GTP + M EQV   V                       +G
Sbjct: 309 KLVEEYKFPSLFINQFYPRPGTPAAKM-EQVPAQV-----------------------IG 344

Query: 412 QIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           +  +VL+ +   +    V  + + + V++      +G +++V I +     + G+ V
Sbjct: 345 ERQQVLVTEESFDSKFYVAHNQFYEQVLVPKNPAFMGKMVEVDIYESGKHFMKGQPV 401


>gi|291548154|emb|CBL21262.1| RNA modification enzyme, MiaB family [Ruminococcus sp. SR1/5]
          Length = 375

 Score =  282 bits (721), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 107/379 (28%), Positives = 194/379 (51%), Gaps = 12/379 (3%)

Query: 97  EGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA---RFGKRVVDTD 153
              + +VV  GC  Q  GE++  +   +++V+G      + E L      + G       
Sbjct: 1   MNPEAIVVATGCYVQTGGEKL-EKDEAIDLVLGNNQKINIVEALAEYAEDKPGHGSHVIK 59

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
            +   ++E LSI     +    V A++ +Q+GC++FCT+C++PY RG   SR++  V+ E
Sbjct: 60  INQTKEYEELSI----DHTAEHVRAYIKVQDGCNQFCTYCIIPYARGRVRSRNIESVLKE 115

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
            R L + G  E+ L G +++++     + +K T   L+ ++ EI+G+ R+R  +  P  +
Sbjct: 116 VRALAEKGYKEVVLTGIHLSSYGVDFPEEKKETLLSLIRAVHEIEGIRRIRLGSLEPGIV 175

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
           +    +    L  + P+ HL +QSG D  L+ MNRR+ + EYR+  + +R V  + A+++
Sbjct: 176 TREFAEGIAALPKVCPHFHLSLQSGCDETLERMNRRYRSGEYRERCELLREVYGNPALTT 235

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLC 393
           D IVGFP E++++FR + D VD I + +   FKYS R GT  + M  Q+ E  K+ R   
Sbjct: 236 DVIVGFPQESEEEFRKSYDFVDSIRFYETHIFKYSRRQGTKAAAMDGQLTEAEKSFRSEK 295

Query: 394 LQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK--LVGRSPWLQSVVLNSKNHN-IGDI 450
           + +        +  + +G+ +EVLIE+   + G+   +G S       +       + DI
Sbjct: 296 MIELHHRHAGDYEKSMLGKNLEVLIEEEYTKDGRTWYLGHSREYIKTAVPKSEAYGVNDI 355

Query: 451 IKVRITD-VKISTLYGELV 468
           + V+    ++   + GE V
Sbjct: 356 VIVKAEGFLEEHIMTGEAV 374


>gi|76802239|ref|YP_327247.1| hypothetical protein NP3198A [Natronomonas pharaonis DSM 2160]
 gi|76558104|emb|CAI49690.1| conserved hypothetical protein [Natronomonas pharaonis DSM 2160]
          Length = 414

 Score =  282 bits (721), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 111/449 (24%), Positives = 201/449 (44%), Gaps = 43/449 (9%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
            + +++YGC  N  +S ++E      G+ RV++ + AD+ +LNTC + EK      + L 
Sbjct: 3   TYHIETYGCTSNRGESRQIERKLRDAGHYRVDTPEKADVAILNTCTVVEKTE---RNMLR 59

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R   L+           ++V GC+A A+G+E       V                     
Sbjct: 60  RAEELEAE------TADLIVTGCMALAQGDEFGDIDAQVLHW------------------ 95

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                +   +     E  +          GV   L I  GC   C++C+  +  G   S 
Sbjct: 96  -----EDVPTAVTNGECPTTTPDAEPVLDGVVGILPIARGCMSNCSYCITKFATGRVDSP 150

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            +++ V++AR L+  G  E+ + GQ+   +   G D  +    +LL  + +I G  R+R 
Sbjct: 151 PVAENVEKARALVHAGAKELRITGQDTGVY---GWDTGERKLPELLDRICDIDGEFRVRL 207

Query: 266 TTSHP---RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
             ++P     + + L     + + L  ++H PVQSGSD +L+ M R+H   +++ I+D  
Sbjct: 208 GMANPGGVHGIHEELADVFAENEKLYNFIHAPVQSGSDDVLEDMRRQHRVEKFKDIVDAF 267

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
                   +S+DFIVGFP E + D   +M+L+ ++   +    ++S R GT  ++M   +
Sbjct: 268 DERLDHWTLSTDFIVGFPTEDEADHELSMELLAEVRPEKINVTRFSKRPGTDAADMKG-L 326

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL-N 441
              +K ER   +     +       + VG+  EVL+ + G     +  R    + V++ +
Sbjct: 327 GGTIKKERSKAMTDLKMDICREVYGSMVGETREVLVVEQGT-GDSVKCRDEAYRQVIVTD 385

Query: 442 SKNHNI--GDIIKVRITDVKISTLYGELV 468
           +  H+I  GD++ V ITD +    +GE V
Sbjct: 386 ATEHDIDPGDMLDVTITDSETVYCFGEPV 414


>gi|160901669|ref|YP_001567250.1| MiaB-like tRNA modifying enzyme [Petrotoga mobilis SJ95]
 gi|160359313|gb|ABX30927.1| MiaB-like tRNA modifying enzyme [Petrotoga mobilis SJ95]
          Length = 434

 Score =  282 bits (721), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 112/435 (25%), Positives = 202/435 (46%), Gaps = 28/435 (6%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERV--NSMDDADLIVLNTCHIREKAAEKV 80
           + ++    ++GC+MN  +S  M +      ++ V    M  +D+ VLNTC +  +A  KV
Sbjct: 1   MKRKVSFITFGCKMNQAESQAMAEKLSPH-FDIVFEEKMGKSDIYVLNTCAVTSEAERKV 59

Query: 81  YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140
              + R++       K   +  ++  GC + ++ EE+ +     ++V+G     ++  LL
Sbjct: 60  RQTIRRLK-------KSNENSKIIATGCYSVSDPEELKKV--GADLVLGNLEKKQIDRLL 110

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
                G       +   +K++ L   +   +R R    FL I+EGC   CTFC + + RG
Sbjct: 111 --CEEGIYSDKHFWFHNEKYDILVPNEPYGDRTR---IFLPIEEGCINSCTFCKIRFLRG 165

Query: 201 -IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE--I 257
              +S    +V+    K I+ G  EI L G N+  + G        T  +LL  + +   
Sbjct: 166 LKIVSLPTEEVIKSIEKFIEKGYKEIVLTGTNLG-YYGMD---NSETLEELLNQIGKSFA 221

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
              +R+R T+ +P  ++D L        +   ++HL +Q  SD+IL+SM+R++       
Sbjct: 222 DKEIRIRITSLYPEIITDNLSTILNSYPIFEKHIHLSIQHFSDKILQSMHRKYNRKMIYT 281

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
            I+ +R      +I+ D IVGFPGE ++D R   D ++++   +  SF+YS R GT  + 
Sbjct: 282 AIENLRKYDSKFSITCDLIVGFPGEDEEDLRILFDSIEELKVLKVHSFRYSLREGTVAAK 341

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQS 437
           M  Q+  N K +RL  + K     + ++ +  +G  ++VL E   K+   L G   +   
Sbjct: 342 MQNQIPGNEKKDRLSQMDKIADLSRKNYLNDMLGSRVKVLTESSSKKG--LFGYDEYYIP 399

Query: 438 --VVLNSKNHNIGDI 450
             V  + K    G+ 
Sbjct: 400 HNVQFHEKKIEKGEF 414


>gi|218886497|ref|YP_002435818.1| RNA modification enzyme, MiaB family [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218757451|gb|ACL08350.1| RNA modification enzyme, MiaB family [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 462

 Score =  281 bits (720), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 115/449 (25%), Positives = 188/449 (41%), Gaps = 33/449 (7%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           FF  + GC++N Y++  + + + ++G+       DAD++++N+C +  +A   V   + R
Sbjct: 6   FFALTLGCKINQYETEAVREAWLARGWREAADPADADVLLINSCAVTARAVADVRQAVAR 65

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           +        +      +VV GC AQ   E+I    P V+ VVG Q    L          
Sbjct: 66  MH-------RAAPHGRIVVTGCAAQVLREDIAA-LPGVSDVVGQQAKVSLLRYDPEGGAA 117

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVT---AFLTIQEGCDKFCTFCVVPYTRGIEI 203
                                    R  G T     L +Q+GC   CT+C+VP  RG   
Sbjct: 118 GAHEPDGGGDGGDDLAAGDTAFPAFRIDGFTRSRPVLKVQDGCSHRCTYCIVPLARGAAR 177

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS-----EIK 258
           SR   + + EAR+L+D G  E+ + G N+    G+ L G    F DLL  L      +  
Sbjct: 178 SRDPREALAEARRLLDAGFRELIVSGVNLR-QYGRDLPGGGPDFWDLLAFLERELAPQWA 236

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA-YEYRQ 317
           G  RLR ++  P  + +  +    +  ++ P LHL +QSGS  +L+ M R H        
Sbjct: 237 GRARLRISSLEPGQLGERALDVLAESRLVAPQLHLSLQSGSPGVLRRMGRGHYRPEPLLD 296

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
            +  +  V P   + +D + GFPGE D +F  T+D V  +    A  F YS R GTP + 
Sbjct: 297 FVRELAEVWPLFGLGADILTGFPGEADAEFGETLDFVGALPLTYAHVFPYSRRPGTPAAV 356

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQS 437
           M  Q+ + VK  R   L+  +  ++ +F    + +   +L+   G     + G   +   
Sbjct: 357 MEGQLPQEVKKRRAAELRGAVAVKKATFLQRLLDEP-RLLVAPEGARG--VKGVCEYYAE 413

Query: 438 VVLN------------SKNHNIGDIIKVR 454
                            +    GD++ VR
Sbjct: 414 CRFTGGRRPAAQAGQGGEQAGPGDLVAVR 442


>gi|312076345|ref|XP_003140819.1| CDK5 regulatory subunit-associated protein 1-like 1 [Loa loa]
 gi|307764018|gb|EFO23252.1| CDK5 regulatory subunit-associated protein 1-like 1 [Loa loa]
          Length = 478

 Score =  281 bits (719), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 105/428 (24%), Positives = 197/428 (46%), Gaps = 20/428 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           Q+ +++++GC  N  DS +M  +    G++  N  +DA L +LN+C ++  +  ++ + +
Sbjct: 44  QKIYIRTWGCTHNTSDSEQMAGLLSEAGHQLTNKKEDASLWILNSCTVKTPSETQLENTV 103

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
              R L            ++VAGCV+QAE    LR    +++V G +    + + +E   
Sbjct: 104 KEARKLNK---------FIIVAGCVSQAEPN--LRFLEGISIV-GVKQIECVTQAVEETL 151

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G  V        +    L  +     RK      L I  GC   CT+C     RG  +S
Sbjct: 152 KGNCVRFLSQRKPNSNLLLPKI-----RKNKFIEILAISSGCLNHCTYCKTKSARGNLVS 206

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
             L  +++ AR    +G  E+ L  +++ AW G+ +D       + L  +     ++RL 
Sbjct: 207 FPLDSLLERARNAFADGCKELWLTSEDLGAW-GRDIDMVLPDLLNALVEIIPEGCMLRLG 265

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
            T           I    +   +  +LH+PVQS SD +L  M R +T  ++ +++D +  
Sbjct: 266 MTNPPYILDFLEEISEILNHPRVYSFLHIPVQSASDAVLADMRREYTCSDFCRVVDYMTQ 325

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             P+I I++DFI  +P ET  DF  +M LV K  +   F  ++  R+GTP +N+ +++D 
Sbjct: 326 NVPNIYIATDFICAYPTETKSDFEESMALVRKYRFPSLFINQFYSRIGTPAANL-KKIDT 384

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
                R   +    R     ++   +G+   VL+ +   ++   VG + + +  +++SK 
Sbjct: 385 VEARRRTAEMSTLFRSYS-RYDKKRIGEKHRVLVCELATDQQHYVGHNKYYEHFLISSKK 443

Query: 445 HNIGDIIK 452
             +G  ++
Sbjct: 444 CLLGKWVE 451


>gi|323700753|ref|ZP_08112665.1| RNA modification enzyme, MiaB family [Desulfovibrio sp. ND132]
 gi|323460685|gb|EGB16550.1| RNA modification enzyme, MiaB family [Desulfovibrio desulfuricans
           ND132]
          Length = 449

 Score =  281 bits (718), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 118/455 (25%), Positives = 205/455 (45%), Gaps = 29/455 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
            F   + GC++N Y++  + + +  +    V+    ADLI++N+C +   A   +   + 
Sbjct: 3   TFHTATLGCKINQYETRSIAEAWTGRSAVEVDDPRAADLILVNSCAVTANAVADLRQAVR 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R         ++  +  ++V GC AQ   EE+ +   +V VV        L         
Sbjct: 63  RFH-------RDNPEAGIIVTGCAAQVMPEELAQLPGVVRVVSQADKARLLDGPGLDGPG 115

Query: 146 G---KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
               +   + D +V DK E +              A + +Q+GC  FCT+C+VP TRG  
Sbjct: 116 LGSLEASPNLDGNVPDKAEGVRFAPFSITGYGRARAVVKVQDGCSHFCTYCIVPLTRGRS 175

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS-----EI 257
           +SR  ++V  E  +L+  G  E  L G N+  + G+ L G K  F DL+  L      E 
Sbjct: 176 VSRDPAEVEGEVARLLGAGFREFILSGINLRHF-GRDLPG-KPDFWDLVARLETNFAPEW 233

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR-HTAYEYR 316
            G  RLR ++  P  ++D  +   G   ++ P LHL +QSG   +LK+M R  ++     
Sbjct: 234 TGRARLRISSVEPGQLTDKALDVLGASRLVCPQLHLSLQSGDPDVLKAMGRGHYSPQSAV 293

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
             +DR+++  P + + +D I GFPGET++ F  T+DL   +       F YS R GT   
Sbjct: 294 DFMDRLKAFWPVMGLGADLITGFPGETEERFEHTLDLCRALPLTYGHVFPYSERPGTRAV 353

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQ-IIEVLIEKHGKEKGKLVGRSPWL 435
           ++   VD  V+ ER   L+K +  ++ +F    +    ++VL+     +  +  G S + 
Sbjct: 354 DLPGAVDVPVRKERAARLRKLVGRKKAAFLKTLLDLPHLDVLV-----QDARGRGVSEYY 408

Query: 436 QSVVLNS-KNHNIGDIIKVRITDVKISTLYGELVV 469
            +    +  +     +++ R   V      G +VV
Sbjct: 409 AACRFETPPDAPPRSLVRARPLRVD----KGVVVV 439


>gi|55379963|ref|YP_137813.1| hypothetical protein rrnAC3428 [Haloarcula marismortui ATCC 43049]
 gi|55232688|gb|AAV48107.1| unknown [Haloarcula marismortui ATCC 43049]
          Length = 427

 Score =  281 bits (718), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 113/449 (25%), Positives = 192/449 (42%), Gaps = 37/449 (8%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R+ +++YGC  N  ++ ++E      G+   +  + AD+ +LNTC + EK      + L 
Sbjct: 3   RYHIETYGCTSNRGETQQIEQALREGGHHPADGPESADVAILNTCTVLEKTE---RNMLA 59

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R + L +          +V+ GC+A A+GEE        ++      +  +P+ +     
Sbjct: 60  RAKELDSETP-----ADLVITGCMALAQGEEFQS----ADIDAEVLHWDDVPQYVL---- 106

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                          E  +I         GV   L I  GC   C++C+     G   S 
Sbjct: 107 -------------NGECPTITPDTETVLNGVVGILPIARGCMSDCSYCITKQATGRIESP 153

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           S+ + V++AR L+  G  EI + GQ+   +      G       L    S+I G  R+R 
Sbjct: 154 SVEENVEKARALVHAGAKEIRITGQDTGVYGWDTNQGTSLLPELLDRICSDIDGDFRVRV 213

Query: 266 TTSHPRDMS---DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
             ++P+ +    + L     + D L  ++H PVQSGSD +L  M R+H   EY ++++ +
Sbjct: 214 GMANPKGLHGVREELAAVFAEHDELYNFIHAPVQSGSDDVLADMRRQHAVSEYLEVVETL 273

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
                   +S+DFIVGFP E   D   +M L+ +    +    ++S R GT   NM   +
Sbjct: 274 DDQLDYWTLSTDFIVGFPTEEPADHEQSMALLRETRPEKINVTRFSKRPGTDADNMKG-L 332

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
              +K +R   + +   E      +  VG    VL+ + G ++  LVG     + VV+  
Sbjct: 333 GGQIKKDRSKEMSEAKMELMAEAYEEMVGHTSSVLLVEDGTDES-LVGYDEAYRQVVIAD 391

Query: 443 KNHN---IGDIIKVRITDVKISTLYGELV 468
                  IGD + V IT       +GE +
Sbjct: 392 AQERGLEIGDTVDVEITSHNTVYAFGEPI 420


>gi|118576134|ref|YP_875877.1| 2-methylthioadenine synthetase [Cenarchaeum symbiosum A]
 gi|118194655|gb|ABK77573.1| 2-methylthioadenine synthetase [Cenarchaeum symbiosum A]
          Length = 421

 Score =  281 bits (718), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 120/445 (26%), Positives = 197/445 (44%), Gaps = 31/445 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R ++++YGC  +  DS  +  +  + G+    S +++D  V+ TC +++  A ++   + 
Sbjct: 3   RIWIEAYGCSASQADSEMISGLLVNGGHTLAASPEESDAGVIVTCAVKDATANRMVHRIK 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +           G   +VVAGC+ +AE   + R SP    ++GP +  R   ++E A  
Sbjct: 63  ML-----------GGRPLVVAGCLPKAEPGTMARISPGA-ALMGPNSIGRTVPVVEAALR 110

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G+R ++ D +       L+       R       + I  GC   CTFC     +G   S 
Sbjct: 111 GERRIELDDT------DLTKTGLPKVRLNEAVGIVEIASGCLSECTFCQTKLAKGDLGSY 164

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            +  +V + R  +D+G  E+ L   + N   G  +  +     D   ++  I G  R+R 
Sbjct: 165 RIGDIVRQVRAEVDDGCSEVWLTSTD-NGCYGFDISEDLPGLLD---AVITIPGRFRVRV 220

Query: 266 TTSHPRDMSDCLIKAHGDL---DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
              +P  M     +        D L  +LH+PVQSGS RIL  M R  TA  +     R 
Sbjct: 221 GMMNPMYMPRI-REGLAKSFQSDKLYRFLHIPVQSGSGRILGEMGRGRTAGIFADAARRF 279

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           RS      IS+D IVGFPGETD D+ +T  L++++        +YS R GT  +   EQV
Sbjct: 280 RSEFGGFTISTDVIVGFPGETDGDYESTEALIEEVRPDTVNLSRYSARPGTEAAG-REQV 338

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
           D      R   + +      +  N   VG   +VL  +  +  G + GR+   + V   +
Sbjct: 339 DVQTVKRRSKRMYELSCRISLDRNKEWVGWKGDVLFSEATE--GGIRGRNREYKPVY--A 394

Query: 443 KNHNIGDIIKVRITDVKISTLYGEL 467
           +   +G+  +VRIT      L GE+
Sbjct: 395 EGAVLGETRQVRITKATNHCLVGEI 419


>gi|145220314|ref|YP_001131023.1| MiaB-like tRNA modifying enzyme [Prosthecochloris vibrioformis DSM
           265]
 gi|145206478|gb|ABP37521.1| MiaB-like tRNA modifying enzyme [Chlorobium phaeovibrioides DSM
           265]
          Length = 451

 Score =  281 bits (718), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 112/460 (24%), Positives = 194/460 (42%), Gaps = 30/460 (6%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
            +     + GC++N  ++  +      +G+      +  DLIV+++C + ++A +K    
Sbjct: 6   KKTVSGVTLGCKLNYAETASILQSLVERGWRIAGPQEQPDLIVVHSCAVTKQAEQKCRQK 65

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +          ++   D  VVV GC AQ     ++     V+ V+G    +     +   
Sbjct: 66  IR-------GLVRRHPDSRVVVTGCYAQLSPG-LIADIEGVDAVLGNDEKFDSSSYMGVV 117

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGY----NRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
                       V D+   L+          +      AFL +Q+GCD  C +C +P  R
Sbjct: 118 AAPPPAGKPVVCVSDEGGFLTAHRACSLPSGSEGERTRAFLKLQDGCDYGCAYCTIPLAR 177

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G   S     V+ +A+ L D+G  EI L G N   +R          F +LL  L +I  
Sbjct: 178 GRSRSVPPEVVLQQAQMLADSGYREIVLTGVNTGDYRS-----GTTGFLELLRMLEDID- 231

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           + R+R ++  P  ++D L+        ++P+ HLP+Q+GSDRIL +M RR+   +YR+ +
Sbjct: 232 VPRIRISSLEPDILTDELVALVAASRTIVPHFHLPLQNGSDRILGAMRRRYRTADYRERL 291

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
                   D A+ +D +VG+PGE DDDF  T+  ++ +  A    F  S R GT  +  +
Sbjct: 292 LGAVDAIEDCAVGADVMVGYPGENDDDFGDTVRFIEGLPLAYFHVFSCSVRPGTVLAREV 351

Query: 380 E-----QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG---KLVGR 431
                  V   V + R   L++    +   F    +G+   VL E+  +      +  G 
Sbjct: 352 SCGERLAVAPQVASGRSAILKEIGERKAAEFRLRYLGRRCRVLFEECRQAGNGTLRWSGY 411

Query: 432 SPWLQSVVLN---SKNHNIGDIIKVRITDVKISTLYGELV 468
           S     V ++    +    G  + V I    +  L G L+
Sbjct: 412 SRNYLPVWVDIPADERSLSGMELPVAIVGAGLQ-LEGRLL 450


>gi|257387570|ref|YP_003177343.1| MiaB-like tRNA modifying enzyme [Halomicrobium mukohataei DSM
           12286]
 gi|257169877|gb|ACV47636.1| MiaB-like tRNA modifying enzyme [Halomicrobium mukohataei DSM
           12286]
          Length = 420

 Score =  280 bits (717), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 113/448 (25%), Positives = 195/448 (43%), Gaps = 37/448 (8%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           + +++YGC  N  ++  +E      G+   +  ++AD+ +LNTC + EK      + L R
Sbjct: 4   YHIETYGCTSNRGETQEIEQALREGGHYPADGPEEADVAILNTCTVLEKTE---RNMLRR 60

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
              L      +     +VV GC+A A+GEE         V+          ++ +    G
Sbjct: 61  AEELDAETPGD-----LVVTGCMALAQGEEFRAADVDAEVL-------HWDDVPQHVLNG 108

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
                         E  ++         GV   L I  GC   C++C+     G   S S
Sbjct: 109 --------------ECPTVTPDTETVLDGVVGILPIARGCMSDCSYCITKQATGRIESPS 154

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
           + + V++AR L+  G  E+ + GQ+   +      GE      L    +EI G  R+R  
Sbjct: 155 VEENVEKARALVHAGAKELRVTGQDTGVYGWDTNQGESLLPELLERICTEIDGEFRVRVG 214

Query: 267 TSHPRDMS---DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
            ++P+ +    + L +   + D L  +LH PVQSGSD +L  M R+H   EY  ++D   
Sbjct: 215 MANPKGVHGVREELARVFAEHDELYNFLHAPVQSGSDDVLADMRRQHAVGEYVAVVDTFD 274

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
                  +S+DFIVGFP ET+ DF+ +M L+ +    +    ++S R GT  ++M   + 
Sbjct: 275 EYLDYWTLSTDFIVGFPSETESDFQQSMALLRETRPEKINVTRFSKRPGTDAADMKG-LG 333

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS- 442
             +K +R   + +   +      +A +G+   VL+ + G +   LVG     + VV+   
Sbjct: 334 GQIKKDRSKAMSELKMDVTGDAYEAMLGEQKRVLLTEDGTDDS-LVGYDEAYRQVVVVDA 392

Query: 443 --KNHNIGDIIKVRITDVKISTLYGELV 468
             +   +GD +   IT       +GE +
Sbjct: 393 QQRGLEVGDFVDCEITSHNTVYAFGEPI 420


>gi|46199556|ref|YP_005223.1| hypothetical protein TTC1254 [Thermus thermophilus HB27]
 gi|55981587|ref|YP_144884.1| hypothetical protein TTHA1618 [Thermus thermophilus HB8]
 gi|46197182|gb|AAS81596.1| conserved hypothetical protein [Thermus thermophilus HB27]
 gi|55773000|dbj|BAD71441.1| conserved hypothetical protein [Thermus thermophilus HB8]
          Length = 436

 Score =  280 bits (717), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 117/444 (26%), Positives = 202/444 (45%), Gaps = 27/444 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVN-SMDDADLIVLNTCHIREKAAEKVYSFL 84
           R   ++ GC++N  ++  +     +   E V      ADL+V+N+C +   A       +
Sbjct: 2   RAAFRTLGCKVNQVETEALLGFLKALEPEVVPLEAGGADLVVINSCAVTTTAEADTRKEV 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R R       +      +VV GC A+   E +       + VV       LP ++   R
Sbjct: 62  RRAR-------RYNPHAFIVVTGCYAELAPEVLKEL--GADAVVPNARKAELPRVILE-R 111

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
           FG   + +D       E     + G    R V AFL +Q+GC   C +C++P  RG E  
Sbjct: 112 FG---LPSDPITTPPNEFWGAGERGLLNSR-VRAFLKVQDGCQAGCAYCIIPRLRGKERH 167

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R   + + EA  L+  G+ EI L G  + +++     G     + L+  L  +   VRL 
Sbjct: 168 RDHREALAEAEALLRMGIKEIVLTGVRLGSYK-----GHPRGLAGLVEDLYHLGAKVRL- 221

Query: 265 YTTSHPRDMSDCLIKAHGDL-DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
            ++  P D  + L+K  G     + P+LHL +Q+GSDR+LK M RR+    YR+++ R  
Sbjct: 222 -SSIEPEDTGEDLLKVIGRYAPEVRPHLHLSLQTGSDRLLKLMGRRYDKAYYRELVQRAY 280

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
            + P  A+++D I G P ET+++ R T+  ++++   +  +F Y+PR  T  ++M  QV 
Sbjct: 281 DLIPGFALTTDVIAGLPTETEEEHRETLAFLEELRPTRVHAFTYTPRPKTRAASMP-QVP 339

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
             V+  R   L    +          +G+ +EVL+E+   + G+ +G +P      L   
Sbjct: 340 PEVRKRRTKELIALAQRLAEERIRPRLGERVEVLVERV--QGGEALGHTPDYYEARLEG- 396

Query: 444 NHNIGDIIKVRITDVKISTLYGEL 467
               G+ +  R+  V+   L G +
Sbjct: 397 EARPGETVWARVHGVEGYVLLGRV 420


>gi|297519636|ref|ZP_06938022.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Escherichia
           coli OP50]
          Length = 271

 Score =  280 bits (716), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 102/237 (43%), Positives = 154/237 (64%), Gaps = 1/237 (0%)

Query: 233 NAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLH 292
           NAWRG+  DG   +F+DLL  ++ I G+ R+R+TTSHP + +D +I+ + D   L+ +LH
Sbjct: 1   NAWRGENYDGTTGSFADLLRLVAAIDGIDRIRFTTSHPIEFTDDIIEVYRDTPELVSFLH 60

Query: 293 LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352
           LPVQSGSDRIL  M R HTA EY+ II ++R+ RPDI ISSDFIVGFPGET +DF  TM 
Sbjct: 61  LPVQSGSDRILNLMGRTHTALEYKAIIRKLRAARPDIQISSDFIVGFPGETTEDFEKTMK 120

Query: 353 LVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQ 412
           L+  + +  ++SF +S R GTP ++M++ V E  K +RL  LQ+++ +Q ++++   +G 
Sbjct: 121 LIADVNFDMSYSFIFSARPGTPAADMVDDVPEEEKKQRLYILQERINQQAMAWSRRMLGT 180

Query: 413 IIEVLIEKHGKEK-GKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
              +L+E   ++   +L GR+   + V        IG  + V ITDV  ++L G++V
Sbjct: 181 TQRILVEGTSRKSIMELSGRTENNRVVNFEGTPDMIGKFVDVEITDVYPNSLRGKVV 237


>gi|320161025|ref|YP_004174249.1| hypothetical protein ANT_16230 [Anaerolinea thermophila UNI-1]
 gi|319994878|dbj|BAJ63649.1| hypothetical protein ANT_16230 [Anaerolinea thermophila UNI-1]
          Length = 429

 Score =  279 bits (714), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 111/446 (24%), Positives = 204/446 (45%), Gaps = 26/446 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R F+ S GC++N  +  +    F + G+  V S  +ADL+V+NTC +  +AA      + 
Sbjct: 2   RIFLDSVGCRLNQSEIEKFALEFRAAGHTIVASPSEADLVVVNTCAVTAEAASDSRQKIR 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           +     +          + V GC A  +        P V+ V        L   +     
Sbjct: 62  QAARYTSG--------KIAVTGCWATLDR-VGAMSLPKVDRVFLNDQKDTLVSTVLGIPT 112

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
              V D +    +       + G + R R   AF+ +Q+GCD  CTFCV    RG   SR
Sbjct: 113 --EVFDIEPLARE------PLPGLHARTR---AFIKVQDGCDNHCTFCVTRLARGKGRSR 161

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           ++++V+ + R     G  E+ L G ++ +W        K    DL+  + +   + RLR 
Sbjct: 162 NIAEVLSDIRIAQAGGAKEVVLTGVHLGSWGQDFTP--KMHLRDLIKVILQESDIPRLRL 219

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
           ++  P ++ +    A  +   L  +LHLP+QSG    L+ M R+ +  ++  ++++ R  
Sbjct: 220 SSLEPWNLDEGFF-ALWEDSRLCRHLHLPLQSGCATTLRRMARKTSPQQFETLVNQARRW 278

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
             D+AI++D IVGFPGET+++F  ++  V+++ +A    F YS R GT  + +   V   
Sbjct: 279 ISDVAITTDIIVGFPGETEEEFEESLRFVERMRFAGGHVFTYSDRPGTAATRLPNPVPPE 338

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK---LVGRSPWLQSVVLNS 442
           ++  R   +++ ++E   ++    +G+ + VL E           L G +     VV  S
Sbjct: 339 IRKLRNARIREVVQESAQNYLKQFLGKEVLVLWESTDSLGPLGWNLHGLTDHYIKVVSLS 398

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
           +        +V++ +V+   + GE++
Sbjct: 399 REKLWNRFSRVKLVEVEGDRIRGEIL 424


>gi|149194100|ref|ZP_01871198.1| hypothetical protein CMTB2_03408 [Caminibacter mediatlanticus TB-2]
 gi|149136053|gb|EDM24531.1| hypothetical protein CMTB2_03408 [Caminibacter mediatlanticus TB-2]
          Length = 433

 Score =  279 bits (713), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 91/452 (20%), Positives = 205/452 (45%), Gaps = 29/452 (6%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ ++ S GC  N+ DS  M     ++ YE   + ++ADLI++NTC     A E+    +
Sbjct: 2   KKLYIASLGCVKNLIDSEVMLGKLKNE-YEITLNPNEADLIIVNTCGFINLAKEESIDTI 60

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             + N K    K      +VV GC+++   + + +  P V++  G   + R+ E+++   
Sbjct: 61  LELANEKKENAK------LVVTGCLSERYKDILPKEIPEVDIWSGVGDFDRIDEIIKS-- 112

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
             K+V      +    +R+              A++ + EGC++ C+FC +P  +G   S
Sbjct: 113 NSKKVFSNKVFLIHNEDRV-------ITGSSYHAYIKLSEGCNQKCSFCAIPSFKGKLQS 165

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R + ++++E ++L D G  + +L  Q+ +++     D       + L    +    + +R
Sbjct: 166 REIEEIINEIKRLKDKGYKDFSLASQDSSSYL---RDKGIRDGLERLIDEIDKIDDINVR 222

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
               +P   +  LI+       ++ Y  +P+Q  + ++LK M R  +  + +++++ ++ 
Sbjct: 223 ILYLYPATTTKRLIRKIFSSKNVVNYFDIPIQHITPKMLKIMKRPGSVNKLKELLNEMK- 281

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
            R D  + +  IVG PGE+ +DF   M  +++  + +   F YS    T      +++ +
Sbjct: 282 -REDSFVRTSIIVGHPGESHEDFEELMQFLEEYNFDRVNVFAYSDEENTNAYKRKDKLPD 340

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVVL 440
            +   R+   +K + +         + + IE   +   +++     R       +   +L
Sbjct: 341 AIIEARVKEAEKVVEKTTQKALKKYLNKEIECFFDGLTEDELFYSVRPKLWEREIDGDIL 400

Query: 441 NSK----NHNIGDIIKVRITDVKISTLYGELV 468
            +     +  +G+I KV++ ++  S L G+++
Sbjct: 401 INDSEIQDLKVGNIYKVKVNELAGSQLIGKII 432


>gi|253828157|ref|ZP_04871042.1| conserved hypothetical protein [Helicobacter canadensis MIT
           98-5491]
 gi|253511563|gb|EES90222.1| conserved hypothetical protein [Helicobacter canadensis MIT
           98-5491]
          Length = 443

 Score =  279 bits (713), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 106/460 (23%), Positives = 206/460 (44%), Gaps = 34/460 (7%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + ++  + S GC  N+ DS  M        YE    +++AD++++NTC   E A ++   
Sbjct: 1   MQKKLHLISLGCTKNLVDSEVMLGKLSE--YENTQEINEADVVIVNTCGFIEAAKKESIQ 58

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            L      K          ++V +GC+++   +E+    P ++++ G   Y ++ +++E 
Sbjct: 59  TLLEALETKKQ------GAILVASGCLSERYAKELKEEIPELDIITGVGDYDKIDKMIEE 112

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            + G++++     V    E    +  G      + A++ + EGC++ C+FC +P  +G  
Sbjct: 113 RQKGEKILSNAKGVFLADETNKRIISGSK----IHAYIKLSEGCNQKCSFCAIPSFKGKL 168

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG--- 259
            SR+L   + E R L   G  + T + Q+ ++   + L G K    +L+  + ++     
Sbjct: 169 HSRTLESTLKEVRNLASQGYSDFTFISQD-SSSYLRDL-GIKDGLVELISGIEDLAKEGV 226

Query: 260 -LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
            +   R    +P   S  LI+   D  +   Y  +P+Q  S ++LK+M R     E+ ++
Sbjct: 227 NIKSARILYLYPATTSKKLIQKIIDSPIFHNYFDMPLQHASQKVLKTMGRNG---EFMEL 283

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           ++ +R   P+  + + FI+G PGE +++F     L++   + +   F YS   GT  + M
Sbjct: 284 LEMMRKA-PNSFVRTSFILGHPGEGEEEFEELCQLIENFSFDRINFFAYSKEEGTKSATM 342

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GR----SP 433
            EQ+       RL  + K    Q         G  +  LIE   KE      GR    +P
Sbjct: 343 -EQIPSKTIHSRLKKINKIFTSQYQQNLKKLKGAEVTALIEGKSKEHEFFYAGRELRFAP 401

Query: 434 WLQSVVLNSK---NHNI--GDIIKVRITDVKISTLYGELV 468
            +   +L +    +  I  G   KV+IT++    + G ++
Sbjct: 402 EIDGEILINDKTIDEEITSG-YYKVKITEIAGEDILGCVI 440


>gi|299138362|ref|ZP_07031541.1| MiaB-like tRNA modifying enzyme YliG [Acidobacterium sp. MP5ACTX8]
 gi|298599608|gb|EFI55767.1| MiaB-like tRNA modifying enzyme YliG [Acidobacterium sp. MP5ACTX8]
          Length = 539

 Score =  279 bits (713), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 95/312 (30%), Positives = 154/312 (49%), Gaps = 16/312 (5%)

Query: 172 RKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQN 231
                +A++ I EGCD  C+FC++P  RG   SR L+ +V E + LI  GV EITL+GQ+
Sbjct: 228 TTPRASAYIKIAEGCDHPCSFCIIPQLRGKFRSRPLASIVAETKSLIAQGVREITLIGQD 287

Query: 232 VNAWRGKGLD-----GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV 286
                G+ L      G++   +DLL +L+ + GL  LR+  ++P  ++  L+++    D 
Sbjct: 288 TT-CYGEDLPKDAVTGKRPELADLLDALAPLPGLKWLRFLYAYPNKVTTRLLESIAKHDT 346

Query: 287 LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDD 346
           +  YL +P+Q  S  +L+ M R  T++ + QIID+ RS+ P + + + FIVGFPGET+ D
Sbjct: 347 VAKYLDVPLQHASANVLRRMKRGGTSHRFLQIIDKARSIVPGLVLRTSFIVGFPGETEAD 406

Query: 347 FRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFN 406
           F   +  V +        F YS   G    ++ E+V +     R   L K   +      
Sbjct: 407 FEELLAFVQEAKIDWLGVFSYSDEEGAGAFSLDEKVPKRTIEARRRKLMKLQNKISTKAR 466

Query: 407 DACVGQIIEVLIEKHGKEKGKLV-GRS----PWLQSVVL-----NSKNHNIGDIIKVRIT 456
            A VG+ I++L+E   +E   L  GRS    P +   VL       +    G   +  IT
Sbjct: 467 RAWVGREIDLLVEGESEETELLWQGRSLDQAPEIDGKVLINDFGPHEVLVPGTFYRAEIT 526

Query: 457 DVKISTLYGELV 468
           +     +   ++
Sbjct: 527 ESHDYDVVARII 538



 Score =  113 bits (284), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 58/133 (43%), Gaps = 3/133 (2%)

Query: 8   IGVAHMVSQIVDQCIVPQ-RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIV 66
           + ++  +     +    + +    S GC  N+ DS  M  +    G E     +DA+++V
Sbjct: 1   MSLSPTLENPATETETRRPKVGFVSLGCPKNLVDSEVMMGLLHRGGAELTPRAEDAEILV 60

Query: 67  LNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNV 126
           +NTC   + A ++    +  +   K +    G    ++VAGC+ +   +EI +  P V+ 
Sbjct: 61  VNTCSFIDSAKQESVDTILEMVQHKIAN--GGRAQKLIVAGCLVERYRDEIRKNIPEVDA 118

Query: 127 VVGPQTYYRLPEL 139
           VVG      + E 
Sbjct: 119 VVGTGELEAIMEA 131


>gi|332703256|ref|ZP_08423344.1| RNA modification enzyme, MiaB family [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332553405|gb|EGJ50449.1| RNA modification enzyme, MiaB family [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 445

 Score =  279 bits (713), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 119/435 (27%), Positives = 200/435 (45%), Gaps = 35/435 (8%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + F +++ GC++N Y+S  + + + ++G+  V  M  A +++ N+C +   A   +   +
Sbjct: 9   RTFAIRTLGCKINQYESQALREAWLARGWSEV-DMRRARVVLFNSCAVTADAVRTLRGQV 67

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            ++        +   +  +V+ GC AQ    E+     +  VV           L+++ R
Sbjct: 68  RQVH-------RVNQEAEIVITGCAAQVLSAELADLVDMARVV-----------LVDQPR 109

Query: 145 FGKRVVDTDY-SVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
                   D      K     +    + R R V   L IQ+GC   CT+C+VP  RG   
Sbjct: 110 KAGLASYPDIGPALPKSAFPPLCISDFKRARPV---LKIQDGCSHGCTYCIVPQGRGPSR 166

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS-----EIK 258
           SR ++ ++ EAR+L+ +G  EI L G N+  + G+ L        DLL  L      +  
Sbjct: 167 SRPMADILAEARRLLASGFREIILGGINLRHF-GRDLPDAP-DLWDLLAFLDSELAPKWA 224

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA-YEYRQ 317
           G  RLR ++  P  +    +       ++ P+LHL +QS S  IL+SM R H A  E   
Sbjct: 225 GRARLRLSSLDPAQLGGKALDTLAASRLVCPHLHLSLQSLSPEILRSMGRGHYAPEEIEG 284

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
            +  +  V P  A+ +D +VGFPGETD  F  T+  +D++    A  F YS R GT  +N
Sbjct: 285 FLRELEKVWPTFALGADLLVGFPGETDGHFEQTVTALDRLPLTYAHVFPYSKRPGTRAAN 344

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQI-IEVLIEKHGKEKGK---LVGRSP 433
           M  QV    K ER+  L+    +++ +F    + +  + V++EK G++ G+   L G S 
Sbjct: 345 MANQVSTREKKERVGQLRALADKRKAAFMRHLLTREKLAVIMEKSGEKPGRRAELSGVSE 404

Query: 434 WLQSVVLNSKNHNIG 448
           +       S     G
Sbjct: 405 FYVECSFASPPGQAG 419


>gi|315452867|ref|YP_004073137.1| putative MiaB-like tRNA modifying enzyme YliG/ Ribosomal protein
           S12 methylthiotransferase [Helicobacter felis ATCC
           49179]
 gi|315131919|emb|CBY82547.1| putative MiaB-like tRNA modifying enzyme YliG/ Ribosomal protein
           S12 methylthiotransferase [Helicobacter felis ATCC
           49179]
          Length = 431

 Score =  278 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 93/425 (21%), Positives = 185/425 (43%), Gaps = 27/425 (6%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           +P +  + S GC  N+ DS  M        YE  + M  AD+I++NTC   + A E+   
Sbjct: 1   MP-KLHLVSLGCSKNLVDSEVMLGKL--AHYELTSEMSLADVIIINTCGFIQSAKEESIR 57

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            L    N +          LVV +GC+++   +E+ +  P +++  G   Y ++  LL +
Sbjct: 58  VLLEAINGRKE------GALVVASGCLSERYKQELAKELPEIDIFTGVGDYDKIDTLLAQ 111

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            +          S   K   L+           V A + + EGC++ C+FC +P  +G  
Sbjct: 112 KQ----------SQFSKQVFLAGTQKRTIIGSQVHAHVKLSEGCNQSCSFCAIPSFKGRL 161

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            S+ +  V+ E  +L+  G  +++ + Q+ +++      G K     L+ ++ +   L  
Sbjct: 162 QSKEIKNVLVEIEQLVKQGFSDVSFIAQDSSSYLKD--KGVKDGLVQLIKAIDKQGALKS 219

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
            R    +P   +  LI+   +  + M Y  +P+Q  SD +LK+M R      + ++++ +
Sbjct: 220 ARIFYLYPTTTTLELIETIANSPIFMNYFDMPIQHISDSMLKTMRRNSNKATHVRLLEAM 279

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+  P   + +  ++G P E + D     + +    + +   F +SP  GT    M  Q+
Sbjct: 280 RA-VPASFLRTTLLLGHPHEQEADIAELQEFLQSFSFDRINLFAFSPEEGTKAYEMP-QI 337

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSP----WLQSV 438
              V   RL  +   ++ Q  +     VGQ +++++E   ++   L  R       +   
Sbjct: 338 QSKVINARLDQINALVQAQVETSMQQLVGQTLDIIVEGLSEDGLFLKARDRRWGLEIDGE 397

Query: 439 VLNSK 443
           +L ++
Sbjct: 398 ILINE 402


>gi|254457391|ref|ZP_05070819.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Campylobacterales
           bacterium GD 1]
 gi|207086183|gb|EDZ63467.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Campylobacterales
           bacterium GD 1]
          Length = 437

 Score =  278 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 101/459 (22%), Positives = 198/459 (43%), Gaps = 40/459 (8%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           +  +  + S GC  N+ D+  M     +  +E  ++  +AD+I++NTC   + A ++  +
Sbjct: 1   MSNKLHIVSLGCTKNLVDTEVMMGKLQN--FELTDTESEADVIIVNTCGFIDAAKQESIN 58

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-- 140
            +  +   +        D ++V+AGC+++   E++  + P V++  G   Y  + ELL  
Sbjct: 59  TVLNLHEARKE------DSVLVMAGCLSERYKEDLATQMPEVDIFTGVGDYDHIDELLRE 112

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           +++RF   V   D S                      A++ + EGC++ C+FC +P  +G
Sbjct: 113 KKSRFSDEVFLIDGS------------ERVVTGSTYHAYIKLSEGCNQTCSFCAIPSFKG 160

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
              SR+L  +  E   L+  G  + + + Q+ +++        K   S L+  +  I+G+
Sbjct: 161 KLNSRNLDSIAKEVEGLVAKGYYDFSFVSQDSSSYLRD--QNIKDGLSLLIQRIELIEGV 218

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
              R    +P   +  L+K     ++   Y  +P+Q  +D +L+ M R     +  +++D
Sbjct: 219 KSARILYLYPSTTTISLLKNIAKSEIFHNYFDMPIQHINDDMLRMMKRGFGKDKTIELLD 278

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
            +R + P+  + + FIVG P ET++ F    +     G+ +   F YS    TP  +M  
Sbjct: 279 FMRGL-PNSFVRTSFIVGHPDETEEMFEEMCEFAASFGFDRINVFSYSDEETTPAYDMSN 337

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGR----SPWL 435
           ++   + A R   L     E         VG+ IE++I+    E    L  R    +P +
Sbjct: 338 KISVELIASRAQILGDIASECTHKSLQNEVGKDIELIIDGESNEHEYLLSARKTIWAPEI 397

Query: 436 QSVVL-----NSKNHNIGDIIKVRITDVKISTLYGELVV 469
              +             G I K ++T+     L G ++ 
Sbjct: 398 DGEIYVNDRTKDDELEFGKIYKAKVTE-----LVGNILT 431


>gi|257054056|ref|YP_003131889.1| MiaB-like tRNA modifying enzyme [Halorhabdus utahensis DSM 12940]
 gi|256692819|gb|ACV13156.1| MiaB-like tRNA modifying enzyme [Halorhabdus utahensis DSM 12940]
          Length = 424

 Score =  278 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 120/449 (26%), Positives = 201/449 (44%), Gaps = 40/449 (8%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R+ +++YGC  N  +S  +E      G+  V+    AD+ +LNTC + EK      + L 
Sbjct: 3   RYHIETYGCTSNRGESQAIERRLRQGGHYPVDDPSRADVAILNTCTVVEKTE---RNMLR 59

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R   L            +V+ GC+A A+GE     +    ++     +  + E +     
Sbjct: 60  RAAELDEETP-----ADLVITGCMALAQGEAFDDAAVDAEIL----HWDEVAEYVRNGEC 110

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                DTD  ++D                 VT  L I  GC   C++C+     G   S 
Sbjct: 111 PTATPDTDVVLDD-----------------VTGILPIARGCLSDCSYCITKQATGTIDSP 153

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            + + V +AR+L+D G  E+ + GQ+   +   GL+  +    +LL  + E+ G  R+R 
Sbjct: 154 PVEENVQKARELLDAGARELRITGQDTGVY---GLENGERKLPELLTRICELPGEFRVRV 210

Query: 266 TTSHPRD---MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
             ++P+    M + L     + D L  +LH PVQSGSD +L  M RRH   E+++I+   
Sbjct: 211 GMANPKGVYGMHEELADVFAEHDELYNFLHAPVQSGSDDVLVDMRRRHRTPEFKEIVAAF 270

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
                   +++DFIVGFP ETD DF+ ++DL+  +   +    ++S R GT  + + + +
Sbjct: 271 DERLEYWTLATDFIVGFPTETDADFQQSLDLLRDVEPEKVNVTRFSKRPGTDAAEL-DGL 329

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
              +K ER   +     +   + +DA VG+   VL+ + G E   LVG     + V +  
Sbjct: 330 GGTIKKERSSAMTDLKMDVVGAAHDAMVGEEHTVLLTQDGTEDS-LVGYDEAHRQVAIPE 388

Query: 443 KNHN---IGDIIKVRITDVKISTLYGELV 468
                  +GD + V IT        GE +
Sbjct: 389 AESMGLELGDFVDVEITGHNTVYALGEPI 417


>gi|154150044|ref|YP_001403662.1| MiaB-like tRNA modifying enzyme [Candidatus Methanoregula boonei
           6A8]
 gi|153998596|gb|ABS55019.1| MiaB-like tRNA modifying enzyme [Methanoregula boonei 6A8]
          Length = 430

 Score =  278 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 120/450 (26%), Positives = 202/450 (44%), Gaps = 53/450 (11%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           +  +R ++++YGC+ N  D+  +  +    G   V + +DAD +V+NTC +      ++ 
Sbjct: 20  LAGKRVYIETYGCRYNFGDTANLVAVLKHYGSTVVPAPEDADAVVVNTCTVVGPTERRML 79

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             L  ++              + V GC+   + E IL     V  ++ P T       L 
Sbjct: 80  RRLSALQEKP-----------LFVTGCMPLVQREAILAVCSPV--IIHPDTIREASRALM 126

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
                                                 + I +GC   CT+C+    RG 
Sbjct: 127 TV-----------------------------GSESVGIVQIAQGCLGRCTYCITRRARGP 157

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
             S  + ++ ++  + +  G  EI L  Q+ +AW             DLL +LS I G  
Sbjct: 158 LRSFPVQEIRNKIEEYVRAGAYEIQLTAQDTSAWGRDT----GQRLPDLLTALSSIPGNF 213

Query: 262 RLRYTTSHPR---DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           RLR    +P     + D LI A    D L  ++HLPVQSGSDRIL+ M R +T  E+ +I
Sbjct: 214 RLRVGMMNPATTLGILDDLIDAFA-SDRLFRFVHLPVQSGSDRILEQMGRGYTVREFEEI 272

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           +   R   PDI+I++DFIVGFPGET++DF  +++L+ +I  A+    +YSPR  T G   
Sbjct: 273 VSAFRGRYPDISIATDFIVGFPGETEEDFSRSLELIGRIRPAKVNVTRYSPRPFT-GPFE 331

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSV 438
            +   + VK +R   L     EQ V+ N   +G ++  ++ +  +  G ++ R+   Q +
Sbjct: 332 EKDFPDAVKKDRSRILNAYAEEQYVALNRPLLGTMVFCVVTEKIR-PGSVMARTASYQGL 390

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           V+  +  ++G    VR+   +     G+L+
Sbjct: 391 VI-GEELSVGTAAVVRLKKDRKYFFMGDLL 419


>gi|152149498|pdb|2QGQ|A Chain A, Crystal Structure Of Tm_1862 From Thermotoga Maritima.
           Northeast Structural Genomics Consortium Target Vr77
 gi|152149499|pdb|2QGQ|B Chain B, Crystal Structure Of Tm_1862 From Thermotoga Maritima.
           Northeast Structural Genomics Consortium Target Vr77
 gi|152149500|pdb|2QGQ|C Chain C, Crystal Structure Of Tm_1862 From Thermotoga Maritima.
           Northeast Structural Genomics Consortium Target Vr77
 gi|152149501|pdb|2QGQ|D Chain D, Crystal Structure Of Tm_1862 From Thermotoga Maritima.
           Northeast Structural Genomics Consortium Target Vr77
 gi|152149502|pdb|2QGQ|E Chain E, Crystal Structure Of Tm_1862 From Thermotoga Maritima.
           Northeast Structural Genomics Consortium Target Vr77
 gi|152149503|pdb|2QGQ|F Chain F, Crystal Structure Of Tm_1862 From Thermotoga Maritima.
           Northeast Structural Genomics Consortium Target Vr77
 gi|152149504|pdb|2QGQ|G Chain G, Crystal Structure Of Tm_1862 From Thermotoga Maritima.
           Northeast Structural Genomics Consortium Target Vr77
 gi|152149505|pdb|2QGQ|H Chain H, Crystal Structure Of Tm_1862 From Thermotoga Maritima.
           Northeast Structural Genomics Consortium Target Vr77
          Length = 304

 Score =  278 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 98/301 (32%), Positives = 152/301 (50%), Gaps = 8/301 (2%)

Query: 173 KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNV 232
           +    A++ I +GCD+ CTFC +P  +G   SRS+  +  E   L+  G  EI L+ Q+ 
Sbjct: 1   EERPYAYVKISDGCDRGCTFCSIPSFKGSLRSRSIEDITREVEDLLKEGKKEIILVAQDT 60

Query: 233 NAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLH 292
            +  G  L   K    DLL  L+ + G   +R    HP  +++ +I A  +LD ++ Y  
Sbjct: 61  TS-YGIDLY-RKQALPDLLRRLNSLNGEFWIRVXYLHPDHLTEEIISAXLELDKVVKYFD 118

Query: 293 LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352
           +PVQ GSD+ILK   R  ++ E ++ +  IR   PD  + +  IVGFPGET++DF     
Sbjct: 119 VPVQHGSDKILKLXGRTKSSEELKKXLSSIRERFPDAVLRTSIIVGFPGETEEDFEELKQ 178

Query: 353 LVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQ 412
            V++I + +  +F YS   GT   N+ E+VD      R   L     E   S  D  VG+
Sbjct: 179 FVEEIQFDKLGAFVYSDEEGTVAFNLKEKVDPEXAKRRQEELLLLQAEISNSRLDRFVGK 238

Query: 413 IIEVLIEKHGKEKGKLVGRS----PWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            ++ L+E  GKE   LVGR+    P +  VV       IGD ++V I +      +G ++
Sbjct: 239 KLKFLVE--GKEGKFLVGRTWTEAPEVDGVVFVRGKGKIGDFLEVVIKEHDEYDXWGSVI 296

Query: 469 V 469
           +
Sbjct: 297 L 297


>gi|206895107|ref|YP_002247157.1| 2-methylthioadenine synthetase [Coprothermobacter proteolyticus DSM
           5265]
 gi|206737724|gb|ACI16802.1| 2-methylthioadenine synthetase [Coprothermobacter proteolyticus DSM
           5265]
          Length = 424

 Score =  278 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 111/444 (25%), Positives = 205/444 (46%), Gaps = 37/444 (8%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + +V++ GC  N+  +           YE V S ++AD+IV+NTC     A E+  +   
Sbjct: 5   KIYVETLGCPKNLVRTQDFYRQLDYSNYEVVYSPEEADVIVVNTCGFIADAVEESLTVAL 64

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILR-RSPIVNVVVGPQTYYRLPELLERAR 144
           +++        E  D ++V AGCV    G E+++   P  + VV                
Sbjct: 65  QLKE-------EYPDSVLVFAGCVPLRFGTELVQSELPEFDYVVPGFNM----------- 106

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
                  + +S      + S++   Y       A+++I EGC+  C++C +P   G   S
Sbjct: 107 ------PSAFSEYQGPLQTSVLTYPY-------AYVSIAEGCNGRCSYCTIPKFWGSLKS 153

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R   ++VDE  +L + G+ E+ L+ Q+  AW G  L G + +   LL +L + + +  +R
Sbjct: 154 RPAVEIVDEINELYEIGIREVILVSQDTGAW-GTDLYG-RPSLELLLRALRDTQ-IPWIR 210

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
               +P  +++ L+ A  D   ++PY  +PVQSGSD++L+ M R +   +  Q +  I  
Sbjct: 211 LMYVNPTFITEKLLLAWKDTGRVLPYFDIPVQSGSDKVLRQMRRGYDRNQILQALKLIDG 270

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           V  +    +  +VGFPGET+DD +AT+DL+ +  +     F Y          ++ +VD 
Sbjct: 271 VFAENTKRTSIMVGFPGETEDDVQATLDLLIQGEFHHVGVFGYCDEEEADSHKLVPKVDP 330

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPWLQSVVLNS 442
            +   R    +    E    + + CVG+  + L+E     +  G++ G++P +  + L  
Sbjct: 331 EIINTRKTATEAVALELHRLWEEKCVGKTYQCLVEASSGSEFIGRIWGQAPEIDGMFLGK 390

Query: 443 KNHNIGDIIKVRITDVKISTLYGE 466
                G+++++ +   K   L G 
Sbjct: 391 GEVEPGEMVEIVVEKTKPGQLIGR 414


>gi|300870181|ref|YP_003785052.1| MiaB-like tRNA modifying enzyme [Brachyspira pilosicoli 95/1000]
 gi|300687880|gb|ADK30551.1| MiaB-like tRNA modifying enzyme [Brachyspira pilosicoli 95/1000]
          Length = 415

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 110/431 (25%), Positives = 208/431 (48%), Gaps = 33/431 (7%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
             + ++GC++N Y+S ++     + G     ++ +AD I +NTC +   + +K+ S+L +
Sbjct: 3   IHIHTFGCRLNQYESEKIAYELKNMGANIT-TLKEADAIAINTCTVTNDSDKKLVSYLEK 61

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           + +++           + + GC    +G      +   N++     +             
Sbjct: 62  LEDIEQK--------KIFLIGCYVSKKG----FTTENKNIITINNDHK------------ 97

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           +      ++   K     I    +  +    A+L IQ+GC+ FC++C+V   RG   S  
Sbjct: 98  EEAAQIIFNTIQKDTNKEIKSPIFFPQEQSRAYLKIQDGCEVFCSYCIVSRVRGKHKSLE 157

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL--VRLR 264
            +++ +  +   D    EI L G N+ ++        +  F+D+L ++ E      +R+R
Sbjct: 158 PNKIYEAIKIANDYNYKEIVLTGLNLGSYNFN----NEIKFADILKNILEHSSKYGIRIR 213

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
            ++  P    D LI    + DVL P+ H+P+QSGS++ILK MNRR+T  EY   I+++  
Sbjct: 214 LSSVEPIYFDDELINLFKNKDVLCPHAHIPLQSGSNKILKLMNRRYTREEYLTSIEKLYK 273

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           V P++AIS+D +VGFP E +DDF  T +L +K  + +   F+YS R  TP S M  ++  
Sbjct: 274 VNPNMAISTDVMVGFPEEENDDFNDTYNLCEKSKFIKMHVFRYSDRENTPSSKMQNKIGY 333

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
             K +R   L +   + + ++ +  +G+ ++V++E+   E    +G S     V   S  
Sbjct: 334 RRKLKRAKLLNELNNKMKDNYYNNALGRKLDVIVEEVL-ENNYYIGTSGEYLKVKFKSDK 392

Query: 445 -HNIGDIIKVR 454
             N  ++I V+
Sbjct: 393 TLNKKELITVK 403


>gi|253568256|ref|ZP_04845667.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|251842329|gb|EES70409.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 306

 Score =  277 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 84/305 (27%), Positives = 152/305 (49%), Gaps = 12/305 (3%)

Query: 172 RKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQN 231
                 A+L I EGCD+ C++C +P   G  IS+S+ +++DE R L+  GV E  ++ Q 
Sbjct: 2   TTPKHYAYLKISEGCDRKCSYCAIPIITGRHISKSMEEILDEVRYLVSQGVKEFQVIAQE 61

Query: 232 VNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL 291
           +  + G  L  +K    +L+  +SEI G+  +R   ++P      L +   + D +  Y+
Sbjct: 62  LT-YYGVDLY-KKQMLPELIERISEIPGVEWIRLHYAYPAHFPTDLFRVMRERDNVCKYM 119

Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351
            + +Q  SD +LK M R+ +  +  ++I++ R   P I + +  +VG PGET++DF    
Sbjct: 120 DIALQHISDNMLKLMRRQVSKEDTYKLIEQFRKEVPGIHLRTTLMVGHPGETEEDFEELK 179

Query: 352 DLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACV 410
           + V K  + +  +F YS   GT  +    + + + VK  RL  L    +      + A +
Sbjct: 180 EFVRKARFDRMGAFAYSEEEGTYAAQQYEDSIPQEVKQARLDELMDIQQGISAELSAAKI 239

Query: 411 GQIIEVLIEKHGKEKGKLVGRS----PWLQSVVLNS---KNHNIGDIIKVRITDVKISTL 463
           GQ ++V+I++   E    +GR+    P +   VL S   +   +G   +V +TD     L
Sbjct: 240 GQQMKVIIDRI--EGDYYIGRTEFDSPEVDPEVLISVSREELEVGQFYQVEVTDADDFDL 297

Query: 464 YGELV 468
           Y +++
Sbjct: 298 YAKIL 302


>gi|73669341|ref|YP_305356.1| 2-methylthioadenine synthase [Methanosarcina barkeri str. Fusaro]
 gi|72396503|gb|AAZ70776.1| 2-methylthioadenine synthase [Methanosarcina barkeri str. Fusaro]
          Length = 442

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 110/448 (24%), Positives = 200/448 (44%), Gaps = 22/448 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERV--NSMDDADLIVLNTCHIREKAAEKVYSF 83
           + +++S+GC  +   +  M+      G++ +   + D A++ + N+C ++    +K+   
Sbjct: 2   KVYLESFGCSASQASAEIMKASVERLGHKLLGPEAADQAEVYICNSCTVKYTTEQKILYK 61

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE-- 141
           +  +            ++ V+V+GC+ + + E+IL  +P  + ++G     RL ELL   
Sbjct: 62  IRSMGE---------KNVEVIVSGCMPEVQLEDILHANPEAH-ILGVNAISRLGELLSLI 111

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
             R  K +   ++      E +  ++    R         I +GC+  C++C+V Y RG 
Sbjct: 112 EQRKMKGLPGGEHLEFRASEPVGFLNVPRERSNPNIHICQISQGCNFACSYCIVKYARGK 171

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
             S   + +V++ R  +  G  EI L  Q+ ++  G           +LL  +SEI G  
Sbjct: 172 LHSFPPNDIVEDIRAAVAGGCREIWLTSQD-DSQYGMDT---GVRLPELLRMISEIPGDF 227

Query: 262 RLRYTTSHPRDMSDCLIKAHG--DLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           ++R    +P  +   L       D D +   LHLP+QS S  +LK MNR H       II
Sbjct: 228 KVRVGMMNPFSVLPILDDLVDAFDSDKVFKLLHLPIQSASHSVLKRMNRLHKMDVVDMII 287

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            + R+   D+++ +D IVGF  ETDD+F  T++ V K    +    +YSPR  T   +  
Sbjct: 288 TKFRARFEDLSLFTDIIVGFCDETDDEFEETVEWVQKYRPEKVNISRYSPRPHTKAFSFR 347

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV 439
             +D  +  +R   L K   + ++    A +G    V + K+ +    L  R+   + VV
Sbjct: 348 N-LDSRILVQRSHELHKVCEQIKLGSKQAMIGWKGRVFVSKYTEIGDVLT-RTDAYRPVV 405

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGEL 467
           ++  N   G    + I   K     G+L
Sbjct: 406 ISGSNLKPGQHANIEIVAAKPGYFLGKL 433


>gi|170579583|ref|XP_001894893.1| MiaB-like tRNA modifying enzyme, archaeal-type family protein
           [Brugia malayi]
 gi|158598345|gb|EDP36257.1| MiaB-like tRNA modifying enzyme, archaeal-type family protein
           [Brugia malayi]
          Length = 447

 Score =  277 bits (709), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 108/425 (25%), Positives = 195/425 (45%), Gaps = 20/425 (4%)

Query: 44  MEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLV 103
           M  +  + G++  N  +DA L +LN+C ++  +  ++ + +   R L            +
Sbjct: 1   MAGLLSAAGHQLTNKKEDASLWILNSCTVKTPSETQLENMVREARKLNK---------FI 51

Query: 104 VVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERL 163
           +VAGCV+QAE    LR    +++V G +    + + +E    G  V       ++    L
Sbjct: 52  IVAGCVSQAEPN--LRFLDGISIV-GVKQIECVTQAVEETLKGNCVRFLSRRKQNSNLLL 108

Query: 164 SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVC 223
             +     RK      L I  GC   CT+C     RG  +S  L  +++ AR    +G  
Sbjct: 109 PKI-----RKNKFVEILAISSGCLNHCTYCKTKSARGNLVSYPLDSLLERARNAFADGCK 163

Query: 224 EITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGD 283
           E+ L  +++ AW G+ +D       + L  +     ++RL  T           I    +
Sbjct: 164 ELWLTSEDLGAW-GRDIDMVLPDLLNALVEIIPEGCMLRLGMTNPPYILDFLEEISEILN 222

Query: 284 LDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGET 343
              +  +LH+PVQS SD +L  M R +T  ++ +++D +    P+I I++DFI  +P ET
Sbjct: 223 HPRVYSFLHIPVQSASDAVLSDMKREYTCTDFCRVVDYMIQNVPNIYIATDFICAYPTET 282

Query: 344 DDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQV 403
           + DF  +M LV K  +   F  ++ PR+GTP +N+ +++D      R   +    R    
Sbjct: 283 ESDFEESMALVRKYRFPSLFINQFYPRIGTPAANL-KKIDTIEARRRTAEMSSLFRSYS- 340

Query: 404 SFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTL 463
            +N   +G+   VL+ +   ++   VG +   +  ++ SK   +G  ++VRITDV    +
Sbjct: 341 RYNKERIGEKHRVLVCELATDQQHYVGHNKHYEHFLIPSKKCLLGKWVQVRITDVSKFYM 400

Query: 464 YGELV 468
              L+
Sbjct: 401 KAVLI 405


>gi|268679888|ref|YP_003304319.1| MiaB-like tRNA modifying enzyme [Sulfurospirillum deleyianum DSM
           6946]
 gi|268617919|gb|ACZ12284.1| MiaB-like tRNA modifying enzyme [Sulfurospirillum deleyianum DSM
           6946]
          Length = 414

 Score =  277 bits (708), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 101/428 (23%), Positives = 196/428 (45%), Gaps = 30/428 (7%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F K++GC+ N+YD+  M +      +E      +AD++V+N+C +   A   V S++
Sbjct: 2   KKVFFKTFGCRTNIYDTQVMMENLKD--FEVTEHEAEADIVVVNSCTVTNGADTGVRSYI 59

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
                L            VV+AGC A ++GE +  ++  V  V+G      +  LL  A 
Sbjct: 60  NHASKLGKK---------VVLAGCGAMSKGEALFAQN-RVFGVLGHSEKRSINTLLHNAT 109

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
              ++ D     E                    AF+ IQEGC+  C++C++P+ RG   S
Sbjct: 110 PFFQIGDLTSLDETIVHEY---------TGKTKAFIKIQEGCNFRCSYCIIPFVRGNARS 160

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           +   +++++  KL  NG  E  L G N+ +  GK    +  +   L+  L  I+G+ R+R
Sbjct: 161 QDEQKIIEQVEKLALNGYGEFVLTGTNIGS-YGKD---KGSSLGRLVQRLGAIRGVRRIR 216

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
             +  P  + +   +   +   L  +LH+ +Q  S+ +L+ M RR+      ++   +  
Sbjct: 217 LGSIEPVQIDESF-REILNEPWLERHLHIALQHTSEAMLQLMRRRNNVKRDLELFMELGE 275

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
                A+ +DFI G PGE++  +      +++       +F YS R GTP S M  ++  
Sbjct: 276 K--GFALGTDFITGHPGESEAIWEEAYSTLERFPLTHIHAFTYSKRDGTPSSTMKPEIKG 333

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
           ++   R   ++  +  +  +F +      +EVL+E++  ++   VG   +   V++ S+ 
Sbjct: 334 DIAKIRHQQVEALIERKNRAFREKNHTTPLEVLVEEY--KENFFVGYDQFYNKVMIQSER 391

Query: 445 HNIGDIIK 452
             + + +K
Sbjct: 392 DLLKEWVK 399


>gi|116753688|ref|YP_842806.1| MiaB-like tRNA modifying enzyme [Methanosaeta thermophila PT]
 gi|116665139|gb|ABK14166.1| MiaB-like tRNA modifying enzyme [Methanosaeta thermophila PT]
          Length = 411

 Score =  276 bits (707), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 108/443 (24%), Positives = 200/443 (45%), Gaps = 40/443 (9%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           RF +++YGC  N  +S+ +     + G++  + +D +++++LNTC +  +    +   +G
Sbjct: 2   RFCIETYGCTSNTGNSMELRGALIAHGHQE-SDLDGSEVVILNTCAVTSRTERNMLRRIG 60

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            ++              ++VAGC+  A  E I          VG    + +         
Sbjct: 61  ELK-----------GRRLIVAGCLPAAIPELIESVE-----CVGVLNRWGID-------- 96

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
             RV+D     E     LS      +    +   + I EGC   C +C+V   RG   SR
Sbjct: 97  --RVLDALGRSEHPTSELSASCLPGS----LCGVVNISEGCLGACAYCIVKRARGTLRSR 150

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
              ++  +  +LI +G  EI L  Q+  A  G  +     +  +LL  LS+I G   +R 
Sbjct: 151 EPHEIEKDVMRLISSGAVEIQLTSQDAGA-YGCDI---GASLPELLDLLSDIDGAFMIRV 206

Query: 266 TTSHPRDMSDCLIKAHG--DLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
              +P  +   L         + +  ++HLP+QSGSDR+L+ M R +T+ ++  ++   R
Sbjct: 207 GMMNPNSVLKILDDLLDSYKNEKIYRFIHLPLQSGSDRVLERMRRGYTSDDFVNVVSAFR 266

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           S  P+I++++D I GFPGE+D DFR T D++      +    ++S R  T    M + + 
Sbjct: 267 SRYPEISLTTDVITGFPGESDQDFRMTEDVIRITQPDKVNVTRFSRRPHTLAFMMHD-MP 325

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
           + +K ER   + +   +  +  N   +G+ ++VL+ + G+  G +  R+     VV++  
Sbjct: 326 DRIKKERSRRVTELWMDIALIRNRRYIGETLDVLVTEQGR-AGTMKARTRNYTGVVVHG- 383

Query: 444 NHNIGDIIKVRITDVKISTLYGE 466
             + G  +K R  D     +   
Sbjct: 384 LSSPGKWVKARAIDATPFYVKAR 406


>gi|330836973|ref|YP_004411614.1| MiaB-like tRNA modifying enzyme [Spirochaeta coccoides DSM 17374]
 gi|329748876|gb|AEC02232.1| MiaB-like tRNA modifying enzyme [Spirochaeta coccoides DSM 17374]
          Length = 453

 Score =  276 bits (706), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 116/459 (25%), Positives = 194/459 (42%), Gaps = 39/459 (8%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +  V + GC++N  +   +   F ++G + V     ADL V+NTC +  KA +K      
Sbjct: 2   KVRVYTLGCRLNQTEGEAIAQAFAAEGCDVVQDDMSADLYVVNTCTVTSKAEQK------ 55

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
             R +      E    +VVV GC AQ +G +I   +    +VV P         L R   
Sbjct: 56  -ARRMIRKYASEPHAPVVVVTGCYAQMDGTDIAALA--ARIVVFPLDKKAALLALPRFMT 112

Query: 146 GK-RVVDTDYSVEDKFERLSIVDGGYNRKRG--------------------VTAFLTIQE 184
            +    D+   +  +F  L          +                       A+L +Q+
Sbjct: 113 PRIHSGDSPLDICREFAELVPAQLAALHAKSGGEGKEPSVFDYAPDTFLHNQRAYLKVQD 172

Query: 185 GCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK 244
           GCD  C FC V   RG  +  +  +VV     L   G  E+ L G N+    G   +G  
Sbjct: 173 GCDNACAFCRVHVARGKAVDLNADEVVRRVMHLERQGFHEVVLTGVNLTM-YGYKGEG-- 229

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304
              + +   L  I   +R+R ++  P  +   L+    D   + PY H+PVQS + ++L 
Sbjct: 230 -LGALVEKILEHIGSDMRIRLSSLEPDHVDGRLLDTLHD-PRMQPYFHIPVQSANQKVLY 287

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
            +NR ++      +IDR+R ++ D  I++D I G P E D +F+ T D +   G+A+   
Sbjct: 288 RINRHYSVEHLAWVIDRLRDIKDDPCIAADIIAGLPAEYDAEFQETYDFLKNKGFARLHV 347

Query: 365 FKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE 424
           F +SPR  TP     ++V E+V+ ER   L++        ++    G+  EV++E+  K+
Sbjct: 348 FPFSPRPDTPLYQARDRVPESVRDERAARLRELSACLLKEYSARQEGREAEVILEQ--KK 405

Query: 425 KGKLVGRSPWLQSVVLNSK--NHNIGDIIKVRITDVKIS 461
            G   G +       +     +   GD+ KV I     +
Sbjct: 406 DGWWNGLTGNYLRARVEGSPQDARPGDLFKVVIGKTADN 444


>gi|170741815|ref|YP_001770470.1| MiaB-like tRNA modifying enzyme [Methylobacterium sp. 4-46]
 gi|168196089|gb|ACA18036.1| MiaB-like tRNA modifying enzyme [Methylobacterium sp. 4-46]
          Length = 423

 Score =  276 bits (706), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 128/446 (28%), Positives = 191/446 (42%), Gaps = 33/446 (7%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
             V S+GC++N  +   +       G          DL+V+NTC +  +A  +    + +
Sbjct: 3   VEVLSFGCRLNAVEGEAVRRAAGPAG---------GDLLVVNTCAVTAEATRQARKAIRQ 53

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
                    +E   L +VV GC A+ E     R  P V+ +VG           + A  G
Sbjct: 54  AA-------RERPGLRIVVTGCGAEVEARA-YRAMPEVSGLVGNHAKLAPATWSDGAWSG 105

Query: 147 KRVVDTDYSVEDKFE-------RLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
                   +  D          R +             AFL +Q GCD  CTFCV+P+ R
Sbjct: 106 GTWSGESRAAPDPAGVGAVMAVRHASPAPAPRMPGRTRAFLPVQNGCDHRCTFCVIPFGR 165

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G   S  ++  + +AR L+++GV EI L G ++ A  G+ L         +   L  +  
Sbjct: 166 GPSRSLPVAAAIAQARDLVEDGVREIVLTGIDLTA-YGRDLGAGTGLGGLVKALLRALPD 224

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           L RLR ++    +    L+ A      LMP LHL +Q+G D +LK M RRHT  +     
Sbjct: 225 LARLRLSSIDSVEADADLLDALATEPRLMPQLHLSLQAGDDLVLKRMRRRHTRADAVAFC 284

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
           + +R +RP+I + +D I GFP ET+  F  ++ LV++ G  Q   F YSPR  TP + M 
Sbjct: 285 ETVRRLRPEIVLGADLIAGFPTETEAQFARSLALVEECGLTQLHVFPYSPRPETPAARMP 344

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV 439
            QV   V   R   L++           A VGQ  EVL E+ G       GR+     V 
Sbjct: 345 -QVPGEVARARAARLREAGAAALARRLAAEVGQRREVLAERGG------TGRTEGFLPVR 397

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYG 465
           L  +    G + ++ IT     TL  
Sbjct: 398 LP-EGVAPGTLRRLAITGHDGRTLLA 422


>gi|222480620|ref|YP_002566857.1| MiaB-like tRNA modifying enzyme [Halorubrum lacusprofundi ATCC
           49239]
 gi|222453522|gb|ACM57787.1| MiaB-like tRNA modifying enzyme [Halorubrum lacusprofundi ATCC
           49239]
          Length = 434

 Score =  276 bits (706), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 110/448 (24%), Positives = 199/448 (44%), Gaps = 41/448 (9%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
            + +++YGC  N  +S  +E      G+   +  +DAD+ +LNTC + EK      + L 
Sbjct: 3   TYHIETYGCSSNRGESREIERALRDGGHRPADGPEDADVAILNTCTVVEKTE---RNMLR 59

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R   L++          +VV GC+A A+G+        V+            E+      
Sbjct: 60  RAEELED------VTAELVVTGCMALAQGDAFREA--GVDA-----EILHWDEVPSHVLN 106

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G              E  ++         GV   L I  GC   C++C+  +  G   S 
Sbjct: 107 G--------------ECPTVTPDAEPVLDGVVGILPIARGCMSNCSYCITKFATGRVDSP 152

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           ++ + V++AR L+  G  EI + GQ+   +   G D       +LL  + +I G  R+R 
Sbjct: 153 TVEENVEKARALVHAGAKEIRVTGQDTGVY---GWDNGDRKLPELLDRICDIDGDFRVRL 209

Query: 266 TTSHP---RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
             ++P     + + L +   D + L  ++H PVQSGSD +L+ M R+H   ++R++++  
Sbjct: 210 GMANPGGIHGIHEELAEVFADNEELYDFIHAPVQSGSDDVLEDMRRQHRVEKFREVVETF 269

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
                   +S+DFIVGFP ET+ D   +MDL+ ++   +    ++S R GT  ++M   +
Sbjct: 270 DDRLDHWTLSTDFIVGFPTETEADHERSMDLLAEVRPEKINVTRFSKRPGTDAADMKG-L 328

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
              +K ER   + +   E      ++ VG+  EVL+ + G     +  R    + +++ +
Sbjct: 329 GGTIKKERSKAMSELKMEVVGDAYESMVGETFEVLVVEEGT-GDSVKCRDGAYRQIIVQN 387

Query: 443 KNHN---IGDIIKVRITDVKISTLYGEL 467
                  +GD ++V +T       +GE 
Sbjct: 388 AAERGVAVGDFLEVEVTGHNTVYAFGEP 415


>gi|78357764|ref|YP_389213.1| hypothetical protein Dde_2722 [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78220169|gb|ABB39518.1| Protein of unknown function UPF0004 [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
          Length = 435

 Score =  276 bits (706), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 110/393 (27%), Positives = 188/393 (47%), Gaps = 25/393 (6%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P RF+  + GC++N Y++  + +++ ++G+  V S  +ADL+++NTC +  KA   V + 
Sbjct: 5   PTRFYAATLGCKINQYETQALREVWQARGFTEVQSTAEADLVLVNTCAVTAKAVSDVRAT 64

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           + +         +      +VV GC AQ  G+E+    P V  VV PQ        L++ 
Sbjct: 65  VRQAH-------RANPLARIVVTGCAAQVLGDELAA-LPGVAAVV-PQDAKAG---LKQW 112

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             G     +       F  + +   GY R R   A + +Q+GC   CT+C+VP+TRG   
Sbjct: 113 PQGAVSAPSGSGAAQAFPDMQV--SGYTRAR---AVVKVQDGCSHRCTYCIVPFTRGPSR 167

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS-----EIK 258
           SR+   + DE R+L+  G  E+ L G N+    G+ L      F D++  L      E  
Sbjct: 168 SRAPHDIADEVRRLLQGGFRELILSGVNLR-QYGRDL-AMPADFWDVVARLGNEFGPEWA 225

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR-HTAYEYRQ 317
           G  RLR ++  P  +    +       ++ P LHL +QSGS  +L+ M R  +T      
Sbjct: 226 GRARLRISSLEPGQLGSKALDTLAANPLVSPQLHLSLQSGSASVLRRMGRGHYTPQPLLD 285

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
            +  +R + P   + +D ++GFPGET ++F  T+    ++    A  F YS R GT  ++
Sbjct: 286 FLHSLRGIWPVYGLGADILMGFPGETREEFEETLAFCRELPLTYAHVFPYSRRPGTAAAD 345

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACV 410
           M +Q+    K  R   ++    E++ +F  + +
Sbjct: 346 MKDQLPVAEKKARAAAVRAVAAEKKDAFLQSLL 378


>gi|20094517|ref|NP_614364.1| 2-methylthioadenine synthetase [Methanopyrus kandleri AV19]
 gi|19887629|gb|AAM02294.1| 2-methylthioadenine synthetase [Methanopyrus kandleri AV19]
          Length = 423

 Score =  276 bits (706), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 115/446 (25%), Positives = 194/446 (43%), Gaps = 29/446 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +  V+ YGC  N  D   + ++   +G+E V   ++AD+ VL TC +R+    ++ + + 
Sbjct: 3   KVAVEVYGCAANHDDGRLVRELLRREGFEVVEDAENADVAVLLTCIVRDSVDARMVNRMR 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +  +             VVAGC  +A  E   +  P    +VGP+   R+PE +     
Sbjct: 63  ELERVPT-----------VVAGCFPEAYPERARKLRPDA-ALVGPRHLDRIPEAVRAVLR 110

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G RV       +  ++  +  +        + A + I EGC   C +C V   RG   S 
Sbjct: 111 GDRVEFLGEREDIDWKADAPRELP-----NLAAIVPIAEGCPNRCAYCAVKLARGNLRSF 165

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL-R 264
              +++   ++ ++ G  EI L  Q+   +             D++   S     VRL  
Sbjct: 166 PPERILRRVKRELERGAVEIHLTAQDTATYGLDRGTNVVELLEDVVDLCSRYGARVRLGM 225

Query: 265 YTTSHPRDMSDCLIKAHGDLD-VLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           +   H   +SD L       D VL   +H+PVQSG D +L+ MNR +T  E  ++     
Sbjct: 226 FNPGHAYPISDDLADLFASRDDVLYRSIHMPVQSGDDEVLRRMNRNYTVEEALEVYRAFE 285

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
                 +  +D IVGFPGET++ FR T+  +++       + ++  R GTP + M +QV 
Sbjct: 286 RRLGYFSFITDVIVGFPGETEEAFRNTLRFLERTRPHILHASRFCRRPGTPAARMEDQVP 345

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEV--LIEKHGKEKGKLVGRSPWLQSVVLN 441
           E+VK  R   L +K  E     N   +G+ +EV  ++EK         GR    +  V  
Sbjct: 346 EDVKLRRSRILHRKRLEWAEEANRELIGETVEVTMVMEK--------WGRDEHAKKTVFR 397

Query: 442 SKNHNIGDIIKVRITDVKISTLYGEL 467
            +    G+ ++ RI D   + L  E+
Sbjct: 398 GEVPEPGERLECRIVDASHARLVAEV 423


>gi|308809858|ref|XP_003082238.1| Predicted Fe-S oxidoreductase (ISS) [Ostreococcus tauri]
 gi|116060706|emb|CAL57184.1| Predicted Fe-S oxidoreductase (ISS) [Ostreococcus tauri]
          Length = 481

 Score =  276 bits (705), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 124/414 (29%), Positives = 189/414 (45%), Gaps = 78/414 (18%)

Query: 129 GPQTYYRLPELLERAR-FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCD 187
           GP     LP L++  R  G + ++   SVE+ +  +  V          +AF+TI  GCD
Sbjct: 45  GPGCVSDLPNLIDAVRGTGAKAMNVQLSVEETYADIIPVRE----VGTHSAFVTIMRGCD 100

Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK--------- 238
             C FC+VPYTRG E SR L+ ++ E R L + G+ E+TLLGQNVN++ G          
Sbjct: 101 NACAFCIVPYTRGRERSRDLASIMYEIRSLSERGIKEVTLLGQNVNSYAGDVTSATTRDF 160

Query: 239 ---------------------------------GLDGEKCT------------FSDLLYS 253
                                              DG K              F++LL  
Sbjct: 161 LSQLVGEDVDAVELVANASSAGLAGAQGSAFVGYADGFKSRYDPERKREGTIQFAELLDK 220

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
           ++ +   +R+R+T+ HP+D  D +++   D   +   LH+P QSGS   L+ M R +T  
Sbjct: 221 VASVDPEMRIRFTSPHPKDFPDDVLRVIRDRPNVSKCLHMPAQSGSTATLERMARGYTRE 280

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
            Y ++IDR+R + P  A+++D I GF GET+ D   T+ L+ +IGY QAF F YS R GT
Sbjct: 281 AYIELIDRVRMIIPGCAVTTDIISGFCGETEADHEDTVSLMTRIGYEQAFMFAYSEREGT 340

Query: 374 PGSNM-LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGR 431
                  + V E+VK  RL  +    R +        +G    VL+E   K+   +L G+
Sbjct: 341 GAHRHQKDDVPEDVKQRRLQEVIDAFRAKAGEKQRMEIGSTHCVLVEGPSKKNPEELTGK 400

Query: 432 SPWLQSVVLNSKN-----------------HNIGDIIKVRITDVKISTLYGELV 468
           +   + V+ +                     + GD + VR+T     TL+GEL+
Sbjct: 401 TDTSKWVIFDDAPTGSYAGDARSATTGSHRVSPGDYVAVRVTGCSTGTLFGELL 454


>gi|307253302|ref|ZP_07535175.1| Ribosomal protein S12 methylthiotransferase rimO [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306859214|gb|EFM91254.1| Ribosomal protein S12 methylthiotransferase rimO [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
          Length = 345

 Score =  276 bits (705), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 103/367 (28%), Positives = 167/367 (45%), Gaps = 35/367 (9%)

Query: 21  CIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKV 80
              P   F+ S GC  N+ DS R+     + GY  + S ++ADL+++NTC   + A ++ 
Sbjct: 2   STTPNIGFI-SLGCPKNLVDSERILTELRTDGYNIIPSYENADLVIVNTCGFIDSAVQES 60

Query: 81  YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140
              +G                 V+V GC+  A+  +I    P V  + GP +Y  + + +
Sbjct: 61  LEAIGEALEENGK---------VIVTGCLG-AKENQIREVHPKVLEITGPHSYEAVMKHV 110

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
            +              E       +   G        A+L I EGCD  CTFC++P  RG
Sbjct: 111 HKY---------VPRPERNIYTSLVPAQGVKLTPKHYAYLKISEGCDHRCTFCIIPSMRG 161

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNV----------NAWRGKGLDG--EKCTFS 248
              SR + QV+DEA++L D+GV E+ ++ Q+           N  +    +G   K    
Sbjct: 162 DLDSRPIVQVLDEAKRLADSGVKELLIVSQDTSAYALDQSKENQNKTVFWNGVPIKNNLI 221

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
            L   L  +   VRL Y   +P       + A G    ++PYL +P+Q  S ++LK+M R
Sbjct: 222 TLCEQLGTLGIWVRLHYVYPYPHVDDLIPLMAQG---KILPYLDIPLQHASPKVLKAMKR 278

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
                   + I + R + P++ + S FIVGFPGET++DF+  +D +++    +   FK+S
Sbjct: 279 PGAIDRTLERIKKWREICPELTLRSTFIVGFPGETEEDFQMLLDFLEEAQLDRVGCFKFS 338

Query: 369 PRLGTPG 375
           P  G   
Sbjct: 339 PVEGAVA 345


>gi|295313452|ref|ZP_06804054.1| ribosomal protein S12 methylthiotransferase [Francisella tularensis
           subsp. holarctica URFT1]
          Length = 419

 Score =  276 bits (705), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 115/415 (27%), Positives = 188/415 (45%), Gaps = 44/415 (10%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           +P+  FV S GC  N+ DS R+     ++GY+ V+S D+AD++++NTC     A ++   
Sbjct: 10  IPKIGFV-SLGCPKNLVDSERIITKLKAEGYDLVDSYDNADMVIVNTCGFLNSAIDESLE 68

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +G              +  V+V GC+     + I  + P V  + GPQ Y     L+E 
Sbjct: 69  VIGEA---------IAENGKVLVTGCLGNK-ADLIKEKHPEVLSITGPQDYEN---LIEA 115

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
                 +   D+          +   G        ++L I EGC+  CTFC++P  RG  
Sbjct: 116 VHTHAPIFANDFVS-------LVPPQGIKLTPRHYSYLKISEGCNNTCTFCIIPDIRGKL 168

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-----RGKGLDGEK---CTFSDLLYSL 254
            SRS+  ++ EA KL + GV E+ ++ Q+ +A+        G+   K       DL  +L
Sbjct: 169 KSRSIDNIMKEAEKLKNAGVKELLVISQDTSAYGVDIKYKSGIWNNKEYQSNIIDLATAL 228

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
            ++    RL Y   +P       + A G    ++PYL + +Q  S  +LK M R     +
Sbjct: 229 GDLDMWTRLHYVYPYPHVDKIVPLMAQG---KILPYLDVSLQHSSPEVLKRMKRPAHTQK 285

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
               I++ R + PDI ISS FIVGFPGET+ DF+  +D  +K    +   FKYS   G  
Sbjct: 286 TLDRINKWRDICPDITISSTFIVGFPGETEADFKHLLDFAEKAQLDRVGCFKYSEVEGAK 345

Query: 375 GSNMLEQV--------DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKH 421
            +     +         +++K E+   L++   ++ +    A    I   L+ KH
Sbjct: 346 ANQFDNLIFVATGILHTQDIKPEKS--LKELSADKFIELFKA--NTIFPALVAKH 396


>gi|152992605|ref|YP_001358326.1| tRNA modifying enzyme [Sulfurovum sp. NBC37-1]
 gi|151424466|dbj|BAF71969.1| tRNA modifying enzyme [Sulfurovum sp. NBC37-1]
          Length = 417

 Score =  276 bits (705), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 105/425 (24%), Positives = 194/425 (45%), Gaps = 29/425 (6%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           +  ++ F K++GC+ N +D+  M        +E       +D+IV+N+C +   A   V 
Sbjct: 1   MSSKKVFFKTFGCRTNQFDTQVMMSKLSE--FELSQDDTQSDIIVVNSCTVTNGADSSVR 58

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           +++  I+       ++  +  V++AGC + ++GE +      V  V+G      + E+L+
Sbjct: 59  NYISSIQ-------RKNPNARVILAGCGSHSKGEALF-EDEKVFGVMGHSEKENINEILK 110

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           +      + D ++      E                AF+ IQEGCD  C++C++P  RG 
Sbjct: 111 KETRFYEIGDLEHIDSTIVEEFV---------GKSRAFIKIQEGCDFRCSYCIIPAVRGN 161

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
             S     ++++ RKL  NG  E  L G NV +  G+  D    + + LL  +S I+G+ 
Sbjct: 162 ARSHREETILEQIRKLAANGFGEFILTGTNVGS-YGRDHD---TSMAKLLKKMSMIRGVR 217

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R  +  P  + D  ++   +   +  +LH+ +Q  SDR+L+ MNRR+      ++  R
Sbjct: 218 RIRIGSLEPVQIDDEFMELLSE-PWMAKHLHIALQHTSDRMLELMNRRNRFATDLELFHR 276

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I       A+ +D+IVG PGE + +++  +  V ++      +F YS R  T  + M  +
Sbjct: 277 IAEK--GYALGTDYIVGHPGEDEKEWKEGISRVKELPLTHVHAFSYSKRDNTASAVMKPE 334

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           +  N+  ER   L   ++ +   F        +EVL+E    + G   G   +   V + 
Sbjct: 335 IRGNIAKERHRELTALVKAKNFLFRREH-NCDLEVLLE--SGKNGIYSGFDQYFNRVQVE 391

Query: 442 SKNHN 446
           S    
Sbjct: 392 SDEDL 396


>gi|290953319|ref|ZP_06557940.1| MiaB family tRNA modification protein [Francisella tularensis
           subsp. holarctica URFT1]
          Length = 413

 Score =  275 bits (704), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 115/415 (27%), Positives = 188/415 (45%), Gaps = 44/415 (10%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           +P+  FV S GC  N+ DS R+     ++GY+ V+S D+AD++++NTC     A ++   
Sbjct: 4   IPKIGFV-SLGCPKNLVDSERIITKLKAEGYDLVDSYDNADMVIVNTCGFLNSAIDESLE 62

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +G              +  V+V GC+     + I  + P V  + GPQ Y     L+E 
Sbjct: 63  VIGEA---------IAENGKVLVTGCLGNK-ADLIKEKHPEVLSITGPQDYEN---LIEA 109

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
                 +   D+          +   G        ++L I EGC+  CTFC++P  RG  
Sbjct: 110 VHTHAPIFANDFVS-------LVPPQGIKLTPRHYSYLKISEGCNNTCTFCIIPDIRGKL 162

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-----RGKGLDGEK---CTFSDLLYSL 254
            SRS+  ++ EA KL + GV E+ ++ Q+ +A+        G+   K       DL  +L
Sbjct: 163 KSRSIDNIMKEAEKLKNAGVKELLVISQDTSAYGVDIKYKSGIWNNKEYQSNIIDLATAL 222

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
            ++    RL Y   +P       + A G    ++PYL + +Q  S  +LK M R     +
Sbjct: 223 GDLDMWTRLHYVYPYPHVDKIVPLMAQG---KILPYLDVSLQHSSPEVLKRMKRPAHTQK 279

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
               I++ R + PDI ISS FIVGFPGET+ DF+  +D  +K    +   FKYS   G  
Sbjct: 280 TLDRINKWRDICPDITISSTFIVGFPGETEADFKHLLDFAEKAQLDRVGCFKYSEVEGAK 339

Query: 375 GSNMLEQV--------DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKH 421
            +     +         +++K E+   L++   ++ +    A    I   L+ KH
Sbjct: 340 ANQFDNLIFVATGILHTQDIKPEKS--LKELSADKFIELFKA--NTIFPALVAKH 390


>gi|315452778|ref|YP_004073048.1| MiaB-like tRNA modifying protein [Helicobacter felis ATCC 49179]
 gi|315131830|emb|CBY82458.1| MiaB-like tRNA modifying enzyme,2-methylthioadenine synthetase
           [Helicobacter felis ATCC 49179]
          Length = 418

 Score =  275 bits (704), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 114/433 (26%), Positives = 205/433 (47%), Gaps = 32/433 (7%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + Q+ + K++GC+ N+YD+  M        +ERV S+++A ++VLN+C +   A     +
Sbjct: 1   MKQKVYFKTFGCRTNLYDTQVMLAHLKD--FERVESLEEAQIVVLNSCTVTNDADYTARA 58

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
           +  ++  L            V   GC A ++G ++  +      V G     ++  LL+ 
Sbjct: 59  YAKKVHALGKK---------VYFTGCGANSQGLKLFEQ-GHAFGVFGHDRKEQINALLQT 108

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
                      Y+    +   SIV     + R   AF+ IQEGCD  C++CV+P  RG  
Sbjct: 109 PEK------FFYADSLTYVERSIVPDFVGKTR---AFVKIQEGCDFKCSYCVIPLVRGKS 159

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            S    Q++D+ R L   G+ EI L G NV +  GK     +   + L+  ++ I+G+ R
Sbjct: 160 RSLIEDQILDQVRVLAQKGIVEIVLTGTNVGS-YGKET---RSNIARLIQKIARIEGIKR 215

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R  +  P  +    ++   D  +L  +LH+ +Q   D +LK M RR+  +  R ++++I
Sbjct: 216 VRIGSLEPSQIDAEFLELL-DHPILEKHLHIALQHSHDTMLKHMRRRNRTHSDRALLEKI 274

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
            S     A+ +DFIVG P E+++ +++ ++   ++       F YSPR GT  S M  +V
Sbjct: 275 ASK--GFALGTDFIVGHPYESEEIWQSALENFKQLPLTHIHPFIYSPRSGTLSSTMQNRV 332

Query: 383 DENVKAERLLCLQKKLREQQVSFND--ACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440
           +  +  ERL  ++ +++    +F         ++EVLIE    + G   G   +   + +
Sbjct: 333 NGKIAKERLQIIKTQVQTNNHAFRQQVKAEQHVLEVLIE--SYKGGLYHGSDQYFNPIEI 390

Query: 441 NSKNHNIGDIIKV 453
            +K    G  I V
Sbjct: 391 RAKEDLRGQWIHV 403


>gi|256379799|ref|YP_003103459.1| MiaB-like tRNA modifying enzyme YliG [Actinosynnema mirum DSM
           43827]
 gi|255924102|gb|ACU39613.1| MiaB-like tRNA modifying enzyme YliG [Actinosynnema mirum DSM
           43827]
          Length = 469

 Score =  275 bits (703), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 118/472 (25%), Positives = 202/472 (42%), Gaps = 37/472 (7%)

Query: 18  VDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA 77
           +      +R  + + GC  N  DS  +     + G++ V+   D  ++  NTC   E A 
Sbjct: 1   MPSPTTSKRVAMLTLGCARNEVDSEELAGRLTAGGWQLVDDEADVVVV--NTCGFVESAK 58

Query: 78  EKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLP 137
           +     L    +             VV  GC+A+  G E+    P  N V+G   Y  L 
Sbjct: 59  KDSVDTLLAASD---------SGAKVVAVGCMAERYGAELAESLPEANAVLGFDHYGDLA 109

Query: 138 ELLERARFGK-----RVVD-------TDYSVEDKFERLSIVDGGYNRK-------RGVTA 178
           + L+    GK     + VD       T    ++K + + +   G+  +           A
Sbjct: 110 DRLDDVLAGKALESHKPVDRRTLLPITPVKRQEKAQEVQVPGHGWGPRVLRTRLDDAPVA 169

Query: 179 FLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK 238
            L I  GCD+ C+FC +P  RG  +SR   ++V EA  L + GV E+ L+ +N  +   K
Sbjct: 170 PLKIASGCDRRCSFCAIPSFRGAFVSRHPDEIVAEAMWLAEQGVRELFLVSENSTS-YAK 228

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
            L  E      LL  L+ I+G+ R+R +   P +    L+KA      +  Y  +  Q  
Sbjct: 229 DLPRELGALEQLLPRLAGIEGVDRVRVSYLQPAETKPSLVKAIATTPGVADYFDMSFQHS 288

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           S+ +L+ M R  +   +  ++ +IR + P   I S+FIVGFPGET+ D       + +  
Sbjct: 289 SEAVLRRMRRFGSTESFLALVAQIRELAPQAGIRSNFIVGFPGETEADVAELERFLTEAR 348

Query: 359 YAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI 418
                 F YS   GT    + ++ D +  AER+  +   + E      +  VG+ + VL+
Sbjct: 349 LDAVGIFGYSDEDGTEAEGLGDKHDADTVAERVSRISALVEELTAQRAEDRVGEEVVVLV 408

Query: 419 EKHGKEKGKLVGR----SPWLQS--VVLNSKNHNIGDIIKVRITDVKISTLY 464
           E    ++    GR    +P +    V+ N+   ++GD+++ R+   +   L 
Sbjct: 409 EHEEDDETDCTGRAAHQAPEVDGECVITNADGLSVGDLVRCRVDAAEGVDLV 460


>gi|115314257|ref|YP_762980.1| 2-methylthioadenine synthetase [Francisella tularensis subsp.
           holarctica OSU18]
 gi|156501726|ref|YP_001427791.1| ribosomal protein S12 methylthiotransferase [Francisella tularensis
           subsp. holarctica FTNF002-00]
 gi|167009215|ref|ZP_02274146.1| hypothetical protein Ftulh_00385 [Francisella tularensis subsp.
           holarctica FSC200]
 gi|254367133|ref|ZP_04983166.1| 2-methylthioadenine synthetase [Francisella tularensis subsp.
           holarctica 257]
 gi|122325707|sp|Q0BNJ1|RIMO_FRATO RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|238065371|sp|A7NA32|RIMO_FRATF RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|115129156|gb|ABI82343.1| probable 2-methylthioadenine synthetase [Francisella tularensis
           subsp. holarctica OSU18]
 gi|134252956|gb|EBA52050.1| 2-methylthioadenine synthetase [Francisella tularensis subsp.
           holarctica 257]
 gi|156252329|gb|ABU60835.1| tRNA modifying enzyme, MiaB family [Francisella tularensis subsp.
           holarctica FTNF002-00]
          Length = 431

 Score =  275 bits (703), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 115/415 (27%), Positives = 188/415 (45%), Gaps = 44/415 (10%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           +P+  FV S GC  N+ DS R+     ++GY+ V+S D+AD++++NTC     A ++   
Sbjct: 4   IPKIGFV-SLGCPKNLVDSERIITKLKAEGYDLVDSYDNADMVIVNTCGFLNSAIDESLE 62

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +G              +  V+V GC+     + I  + P V  + GPQ Y     L+E 
Sbjct: 63  VIGEA---------IAENGKVLVTGCLGNK-ADLIKEKHPEVLSITGPQDYEN---LIEA 109

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
                 +   D+          +   G        ++L I EGC+  CTFC++P  RG  
Sbjct: 110 VHTHAPIFANDFVS-------LVPPQGIKLTPRHYSYLKISEGCNNTCTFCIIPDIRGKL 162

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-----RGKGLDGEK---CTFSDLLYSL 254
            SRS+  ++ EA KL + GV E+ ++ Q+ +A+        G+   K       DL  +L
Sbjct: 163 KSRSIDNIMKEAEKLKNAGVKELLVISQDTSAYGVDIKYKSGIWNNKEYQSNIIDLATAL 222

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
            ++    RL Y   +P       + A G    ++PYL + +Q  S  +LK M R     +
Sbjct: 223 GDLDMWTRLHYVYPYPHVDKIVPLMAQG---KILPYLDVSLQHSSPEVLKRMKRPAHTQK 279

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
               I++ R + PDI ISS FIVGFPGET+ DF+  +D  +K    +   FKYS   G  
Sbjct: 280 TLDRINKWRDICPDITISSTFIVGFPGETEADFKHLLDFAEKAQLDRVGCFKYSEVEGAK 339

Query: 375 GSNMLEQV--------DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKH 421
            +     +         +++K E+   L++   ++ +    A    I   L+ KH
Sbjct: 340 ANQFDNLIFVATGILHTQDIKPEKS--LKELSADKFIELFKA--NTIFPALVAKH 390


>gi|262199231|ref|YP_003270440.1| MiaB-like tRNA modifying enzyme [Haliangium ochraceum DSM 14365]
 gi|262082578|gb|ACY18547.1| MiaB-like tRNA modifying enzyme [Haliangium ochraceum DSM 14365]
          Length = 449

 Score =  274 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 133/461 (28%), Positives = 206/461 (44%), Gaps = 37/461 (8%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
            F+ + GC++N  +  R    F   G+  V + DDAD++V+NTC +  +AA K    +GR
Sbjct: 3   VFLTTLGCRLNEAELSRWARDFHRSGHRVVAAADDADVVVVNTCAVTGEAARKSRKLVGR 62

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           +        ++  +  +V+ GC A  E  E+ +    V++VV      RL  L+  A   
Sbjct: 63  LH-------RQRPEARMVLTGCFAALEP-EVAQALAGVDMVVANVDKDRLVPLVAEAFS- 113

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
                      +     +  D    R R   AF+ +Q+GC   CTFC+V   RG E SRS
Sbjct: 114 --APGMPILATEPDSVHAYADRPGGRTR---AFIKVQDGCKNRCTFCIVTVARGEERSRS 168

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
           +++VVDE R L   G  E  L G ++    G+ L         L+ ++     + RLR +
Sbjct: 169 VAEVVDEIRALAAAGYREAVLTGVHLGG-YGRDL---GTDLRTLVDAVLADTDIARLRLS 224

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
           +  P D+ +       +   LMP+LHLP+QSGSD +L  M RR  A ++  ++   R+  
Sbjct: 225 SLEPWDLPEDFWTLWRN-PRLMPHLHLPLQSGSDSVLARMARRSRAADFAALVADARAAI 283

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
            D+ +++D IVGFPGE+D ++  T+D V +IG+     F YSPR GT  + + +QV   V
Sbjct: 284 ADLTLTTDLIVGFPGESDAEWAETVDYVQRIGFGHMHIFSYSPREGTRAARLSDQVRGPV 343

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG----------------KLVG 430
           K  R   +       +       VGQ   VL E   +                    + G
Sbjct: 344 KRARSREMHALAATMKREHLARFVGQERPVLWESGSEADAASNSSSDARPSADAYQTIAG 403

Query: 431 RSPWLQSVV--LNSKNHNIGDIIKVRITDVKISTLYGELVV 469
            +     V     +     G I  VR+  V    L GEL  
Sbjct: 404 YTDNYLRVESAAPAAAALDGAITPVRLVGVHGERLRGELAA 444


>gi|294496305|ref|YP_003542798.1| MiaB-like tRNA modifying enzyme [Methanohalophilus mahii DSM 5219]
 gi|292667304|gb|ADE37153.1| MiaB-like tRNA modifying enzyme [Methanohalophilus mahii DSM 5219]
          Length = 406

 Score =  274 bits (701), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 108/424 (25%), Positives = 187/424 (44%), Gaps = 24/424 (5%)

Query: 50  SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCV 109
             G+  V+  + A +I+ NTC +++   +K+   +                  V+V GC+
Sbjct: 2   DLGHRLVSERE-AKVIICNTCTVKDTTEQKILHKIKEW---------GLQGREVIVTGCM 51

Query: 110 AQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGG 169
            Q + +EIL  +P V+ V+G  +  +L  +L R    +R+          FE        
Sbjct: 52  PQVQLDEILENNPEVH-VLGMNSLLKLGVILNRVH--ERLEGYSLRPMSVFEDSPEGLLN 108

Query: 170 YNRKR--GVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITL 227
             RKR         I +GC+  C++C+V   RG   S     +V +  + +  G  E+ L
Sbjct: 109 VPRKRFSPNIHICQISQGCNNRCSYCIVTLARGPLYSFDADSIVTDIEQAVYEGCSEVWL 168

Query: 228 LGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHG--DLD 285
             Q+ NA  G     ++     LL  ++ I G  R+R    +P      L +       +
Sbjct: 169 TSQD-NAQYGMD---KEIHLPALLERITAIPGDFRVRVGMMNPASTLGILDELLRAYSSE 224

Query: 286 VLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDD 345
            +   LHLP+QS SD+IL+ M R+HT  +   I+++ R+  P+  + +D IVGFPGE ++
Sbjct: 225 KVYKVLHLPIQSASDKILEKMRRKHTMEQANFIVEKFRNAFPESTLFTDIIVGFPGEDEE 284

Query: 346 DFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSF 405
           DF  T+D +      +    +Y+PR  T        +D  +  ER   L +   + ++  
Sbjct: 285 DFELTLDWIRTYHPDKVNISRYTPRPHTEALQFRN-IDTRIVVERSGKLHRLCNQIKLGK 343

Query: 406 NDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHN-IGDIIKVRITDVKISTLY 464
            +  VG+ +EV I +  K KG L+ R+   + VV+        G   +V+I +       
Sbjct: 344 KEDMVGREVEVFISQKAKVKG-LMSRTDSYKPVVIPKAGELCPGQRCRVKIEEATPGYFI 402

Query: 465 GELV 468
           G  V
Sbjct: 403 GHPV 406


>gi|220920232|ref|YP_002495533.1| MiaB-like tRNA modifying enzyme [Methylobacterium nodulans ORS
           2060]
 gi|219944838|gb|ACL55230.1| MiaB-like tRNA modifying enzyme [Methylobacterium nodulans ORS
           2060]
          Length = 412

 Score =  274 bits (701), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 122/443 (27%), Positives = 185/443 (41%), Gaps = 35/443 (7%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
             V S+GC++N  +   +                + DL+V+NTC +  +A         +
Sbjct: 3   VEVLSFGCRLNTAEGEVLRRAAE------TGRPGE-DLVVVNTCAVTAEA-------TRQ 48

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
            R       +      +VV GC AQ E        P V  ++G           +RA   
Sbjct: 49  ARKAIRGAARRTPGARIVVTGCGAQVETAA-YAAMPEVAAIIGNHAKLSPAAWADRAGGR 107

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
            RV D     E        + G         A L +Q GCD  CTFCV+P+ RG   S  
Sbjct: 108 VRVEDIMAVREAAAAPTPRMPG------RTRAVLPVQNGCDHRCTFCVIPFGRGPSRSLP 161

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
           + + + +AR L+++G  E+ L G ++ A  G+ L         +   L  +  L RLR +
Sbjct: 162 VQEAIAQARALVEDGAREVVLTGVDLTA-YGRDLPEAPSLGGLVKAILRALPDLDRLRLS 220

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
           +    +    L+ A      LMP+LHL +Q+G D ILK M RRH   +     + +R +R
Sbjct: 221 SIDSVEADADLLDALASERRLMPHLHLSLQAGDDLILKRMKRRHARADAIAFCETVRRLR 280

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           P+I   +D I GFP ET+  F  ++ LV++ G A    F YSPR  TP + M  Q+   +
Sbjct: 281 PEIVFGADLIAGFPTETEAQFGRSVALVEECGLAHLHVFPYSPRPETPAARMP-QLPAEI 339

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHN 446
             +R   L+           D  VGQ+  VL E+ G      +GR+     V L      
Sbjct: 340 IRDRAARLRAAGEAALGRRLDREVGQVRAVLAERGG------IGRTEGFLPVRLP-DGVA 392

Query: 447 IGDIIKVRITDVKISTLYGELVV 469
            G +  V IT        G ++ 
Sbjct: 393 PGTLRAVAITGHD-----GRVLA 410


>gi|32266379|ref|NP_860411.1| hypothetical protein HH0880 [Helicobacter hepaticus ATCC 51449]
 gi|32262429|gb|AAP77477.1| conserved hypothetical protein [Helicobacter hepaticus ATCC 51449]
          Length = 423

 Score =  273 bits (699), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 113/446 (25%), Positives = 202/446 (45%), Gaps = 30/446 (6%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ + K++GC+ N++D+  M+       +E   + ++AD++V+N+C +   A   V  +L
Sbjct: 5   KKVYFKTFGCRTNLFDTQVMKSNLKH--FECARNENEADVVVVNSCTVTNGADSGVRGYL 62

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            ++R L            V   GC     GEEI     +V+ V       R+ E L    
Sbjct: 63  NKMRELNKK---------VYFTGCGVGTRGEEIFT-HNLVHSVFAHSFKERIDEFL---T 109

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
             +R   T+ + E     +     G +R     AFL IQEGCD  C++C++P+ RG   S
Sbjct: 110 TNQRFFHTESAPEHIDSTIVTHFSGKSR-----AFLKIQEGCDFACSYCIIPFVRGKARS 164

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
                ++++ R L  NG  E+ L G NV ++   G D +    + L+  +  +  L RLR
Sbjct: 165 YPQKSILEQIRALAQNGKTEVVLTGTNVGSY---GKDLKDYNLARLIKDIYSLGVLKRLR 221

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
             +  P  +   L ++  +L  +  +LH+ +Q  S+ +L  MNR +      ++      
Sbjct: 222 VGSLEPSQIDSELKESL-ELPFMEKHLHIALQHTSNTMLSLMNRYNRVESDLELFMYF-- 278

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
            +    + SDFIVG PGE++  ++  ++            F YS R GTP S + ++V  
Sbjct: 279 AKKGFCLGSDFIVGHPGESEAVWQEALENFKSFPLTHLHPFVYSKRDGTPSSTIKDEVKG 338

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV--GRSPWLQSVVLNS 442
           N+  ERL  L++ +     +F  A     ++VL E   +     +  G   +   +   S
Sbjct: 339 NIAKERLHTLKEIVVNNNEAFRKAH-NMPLDVLCESRRESDTAFIYTGLDQFFNPMQFES 397

Query: 443 KN-HNIGDIIKVRITDVKISTLYGEL 467
            N H  G  +K++   ++    YGE+
Sbjct: 398 SNPHLEGQWVKIKTYSIEKERNYGEV 423


>gi|218961714|ref|YP_001741489.1| putative 2-alkenal reductase [Candidatus Cloacamonas
           acidaminovorans]
 gi|167730371|emb|CAO81283.1| putative 2-alkenal reductase [Candidatus Cloacamonas
           acidaminovorans]
          Length = 443

 Score =  273 bits (698), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 99/442 (22%), Positives = 196/442 (44%), Gaps = 31/442 (7%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           ++ + S GC  N+ DS R+  +  S G  R +  ++A+++++N+C     A E++   L 
Sbjct: 3   KYTIVSLGCPKNLVDSERLVAIMESYGMIRTDVWEEANILLINSCSFIFNALEELNCLLA 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            + N     I       +VV GCV     E++    P V+  +  + +      L     
Sbjct: 63  DVINATEKDI-----TKIVVTGCVMNRGYEQLKDYYPEVDAWIPLKDFAAFENYLR---- 113

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                +      +  +RLS     +  + G   +L I +GC+  C++C++PY RG ++S 
Sbjct: 114 -----ENILPSLETPKRLSYTQRVHL-EDGNYVYLRIADGCNNKCSYCMIPYIRGKQVSE 167

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            +  +++EA+ + + G  E+ L+ Q+  +  G  + G+K    +L+ +L        +R 
Sbjct: 168 PIETLIEEAKSMQEYG-RELILIAQDTCS-YGTDIYGKKA-LPELIEALHNQTDYDWIRI 224

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
              HP +      +       L+PY  +P+Q  S +I+K+MNRR +  E +++   I+  
Sbjct: 225 LYLHPDNFELQWTELWKKFPKLLPYFDVPIQQVSPKIIKAMNRRKSYQELKELFFHIQQE 284

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P+    +  +V +P ET +D       + +I + Q   F YSP       ++ + + + 
Sbjct: 285 IPNAVFRTTLMVDYPNETKEDLELLEKFLSEIPFLQGGVFAYSPE----AKDLKDNIYDE 340

Query: 386 VKAERLLCLQ----KKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQS 437
              ++   L      K  + +    +  VG I   LIE +     + VGR    +P +  
Sbjct: 341 FDWKKSKKLMFAWEDKFYQIRNQLLEKYVGTIQSALIEDYDPYSEQYVGRLWFQAPEIDG 400

Query: 438 -VVLNSKNHNIGDIIKVRITDV 458
            V ++    +   +++V I DV
Sbjct: 401 CVYIDKLPADNNSLVEVEIVDV 422


>gi|257791396|ref|YP_003182002.1| MiaB-like tRNA modifying enzyme [Eggerthella lenta DSM 2243]
 gi|257475293|gb|ACV55613.1| MiaB-like tRNA modifying enzyme [Eggerthella lenta DSM 2243]
          Length = 410

 Score =  273 bits (698), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 114/406 (28%), Positives = 178/406 (43%), Gaps = 34/406 (8%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           F V + GC++N  +S         +G E       ADLIV+NTC +  +A +K    + R
Sbjct: 3   FAVVNLGCKVNRVESDDAAARLALRGVETSE--ASADLIVVNTCTVTGEAEKKTRKAVRR 60

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
                   ++      V+V GC A  +          V+VV   Q    +  L + A F 
Sbjct: 61  A-------LRANDHARVLVTGCAAAIDAAFYEALDERVSVVGKAQLAQAIDALFDEAPFS 113

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
                         E   +  G   R R     + +Q+GCD  CT+C+V   RG   SR 
Sbjct: 114 ------------PGEDAPLHIGSGFRTR---VGVKVQDGCDNACTYCIVHVARGRATSRP 158

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG---------LDGEKCTFSDLLYSLSEI 257
              VV E       G  EI L G N+ ++   G             +    +     +  
Sbjct: 159 ADDVVRECASYARAGAREIVLTGINLGSYCDGGRRDPSAIRLAALLRRLLDETADLHAPG 218

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLD-VLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           +   R R ++  PRD+ D LI      D  +  +LHLP+Q+GS ++L+ M R + A  + 
Sbjct: 219 EAPARFRVSSIEPRDVDDALIDLLASADGRVCRHLHLPLQAGSSKVLREMARPYDAERFV 278

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
            +++R+    P +A+S+D I GFPGETD +F+ T+D+     +A+  +F YSPR+GTP +
Sbjct: 279 ALVERLYRRIPQLALSTDIIAGFPGETDAEFQETLDVARACRFAKIHAFPYSPRIGTPAA 338

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422
              +QV   VK  R   L+    E + S      G +   L+E+ G
Sbjct: 339 ERADQVPPAVKEARAAMLRALGDELRASERARRAGTVELALVEEGG 384


>gi|292656724|ref|YP_003536621.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haloferax volcanii
           DS2]
 gi|291371073|gb|ADE03300.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haloferax volcanii
           DS2]
          Length = 429

 Score =  273 bits (698), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 108/449 (24%), Positives = 196/449 (43%), Gaps = 40/449 (8%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R+ +++YGC  N  +S  +E      G+ RV+  ++AD+ ++NTC + EK      + L 
Sbjct: 3   RYHIETYGCTSNRGESRAIESALRDAGHYRVDGPEEADVAIMNTCTVVEKTE---RNMLR 59

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R + L            +++ GC+A A+G +            G        + +  A  
Sbjct: 60  RAKELAAE------TADLIITGCMALAQGNDFREE--------GIDAQILHWDDVPAAVT 105

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                          E  +   G      GV   L I  GC   C++C+  +  G   S 
Sbjct: 106 NG-------------ECPTPGPGVEPVLDGVVGILPIARGCMSNCSYCITKFATGRVDSP 152

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           S+ + V++AR L+  G  E+ + GQ+     G   +G++     L    +EI G  R+R 
Sbjct: 153 SVDENVEKARALVHAGAKELRITGQDTG-VYGWD-NGDRKLPELLDRICTEIDGEFRVRV 210

Query: 266 TTSHP---RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
             ++P     + D L       D L  ++H PVQSGSD +L+ M R+H   ++R+I++  
Sbjct: 211 GMANPGGVHGIRDELAAVFARHDKLYNFIHAPVQSGSDEVLEHMRRQHRVDKFREIVETF 270

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
                   +S+DFIVG+P ETD D   +M+L+ ++   +    ++S R GT  +++   +
Sbjct: 271 DRELDYWTLSTDFIVGYPTETDADHERSMELLREVRPEKVNVTRFSKRPGTDAADLKG-L 329

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
              +K ER   + +   +   +  D  VG   +VL+ + G     +  R    + +++ +
Sbjct: 330 GGTLKKERSKEMSEAKMDIVAAAYDEMVGTERDVLVVEEGT-GDSVKCRDEAYRQIIVQN 388

Query: 443 KNH---NIGDIIKVRITDVKISTLYGELV 468
                   GD  +V +T  +    + E V
Sbjct: 389 ATEHGLEPGDFARVTVTAHQTVYAFAEPV 417


>gi|223039951|ref|ZP_03610234.1| conserved hypothetical protein [Campylobacter rectus RM3267]
 gi|222878819|gb|EEF13917.1| conserved hypothetical protein [Campylobacter rectus RM3267]
          Length = 431

 Score =  273 bits (698), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 112/441 (25%), Positives = 201/441 (45%), Gaps = 40/441 (9%)

Query: 10  VAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNT 69
            A++ S +  Q    ++ F K++GC+ N+YD+  M+       Y+ V+  ++AD++V+N+
Sbjct: 2   NANLNSNLTTQEPRREKVFFKTFGCRTNIYDTELMKSYVKD--YDIVSDENEADIVVVNS 59

Query: 70  CHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG 129
           C +   A     S++  I+              V++ GC A ++G+E+  +   V  V+G
Sbjct: 60  CTVTNSADSGARSYINGIKK---------RGARVILTGCGAVSKGKELFSK-SAVFGVIG 109

Query: 130 PQTYYRLPELLERARFGKRVVDTDYSVEDKFE--RLSIVDGG--YNRKRGVTAFLTIQEG 185
                 +  LL+             S +  FE   L  +D     N +    AF+ IQEG
Sbjct: 110 ASKKEDINALLK-------------SQDPFFELGNLKSIDKNIVTNYENHTKAFIKIQEG 156

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           CD  C++C++P  RG   S     ++ EA+ L  NG  E+ L G N+ +  GK       
Sbjct: 157 CDFACSYCIIPAVRGKARSMDEEAILREAKILAYNGYNELVLTGTNIGS-YGKDT---GS 212

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
           +   LL  L ++ G+ R+R  +  P  + +   +   +   L  +LH+ +Q  S+ +L+ 
Sbjct: 213 SLGRLLGRLGKVGGIKRIRLGSIEPSQIDESFREILRES-WLERHLHIALQHTSEAMLRI 271

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           M RR+ A+   ++   +  +    A+ +D+IVG PGE+++ +   +    K        F
Sbjct: 272 MRRRNQAFRDLELFLELSEM--GFALGTDYIVGHPGESEEIWSEALVNFKKFPLTHLHCF 329

Query: 366 KYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFND--ACVGQIIEVLIEKHGK 423
            YSPR GT  ++M   V  +V   RL  L++ + E    F    A  G  + VL+E+   
Sbjct: 330 AYSPRTGTHSADMKMDVSGDVAKARLKTLKQIVAENNFKFRQEHAKKGGSLNVLVEQLNG 389

Query: 424 EKGKLVGRSPWLQSVVLNSKN 444
           E     G   +   V + +  
Sbjct: 390 E--FYEGFDQFYNKVKIKTDK 408


>gi|84997025|ref|XP_953234.1| hypothetical protein [Theileria annulata strain Ankara]
 gi|65304230|emb|CAI76609.1| hypothetical protein, conserved [Theileria annulata]
          Length = 750

 Score =  272 bits (697), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 105/471 (22%), Positives = 210/471 (44%), Gaps = 38/471 (8%)

Query: 14  VSQIVDQCIVPQ--RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCH 71
           V   +++ I P   + ++K++GC  N+ DS  M  +    GY    ++++ D++++N+C 
Sbjct: 302 VECSMNKSINPSEVKIYLKNFGCSHNISDSEYMLGLISESGYTITENIEECDVVIINSCT 361

Query: 72  IREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVV---- 127
           ++  +   + +++ +   L            ++V GC+ Q++ +  +  + + NV     
Sbjct: 362 VKNPSEHAMVNYINQGLKLNKR---------IIVTGCIPQSDKKHPVLSTSVTNVQFLNK 412

Query: 128 ----VGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQ 183
               VG     ++  ++E    G RVV  +         L  +D    RK  +   + I 
Sbjct: 413 LNNSVGIMQIDKIIYVIENVMNGNRVVLLEKK------SLPSLDLPKIRKNKLIEIIPIS 466

Query: 184 EGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
            GC   CTFC   ++RG+  S  +  ++D     +  GV EI L  +++ A+   G+D  
Sbjct: 467 TGCLGSCTFCKTKHSRGVLNSYEIEAILDRVESSVSEGVKEIWLTSEDLGAY---GIDLG 523

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCL--IKAHGDLDVLMPYLHLPVQSGSDR 301
               + L   ++ +   + LR    +P  +   +  I      D +  ++H+PVQS SD 
Sbjct: 524 TNIITLLYSIINILPQNIMLRLGMCNPPYIKKYINEICEILSHDNVFEFIHIPVQSCSDA 583

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
           +L+ MNR +   ++  I+  I++  P+  I++D I GFP ET+ D + T+  + ++  + 
Sbjct: 584 VLEKMNREYLLEDFLYIVSVIKAKLPNCTIATDIICGFPTETEQDHQITVQTLQQLKLSI 643

Query: 362 AFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKH 421
               +Y  R GT  S+M E +D NVK  R   +           N   +  + +V    +
Sbjct: 644 INISQYYSRKGTISSSMKE-LDNNVKKNRSREITNVFM--SYENNSKFINSVFKVFF--N 698

Query: 422 GKEKGKLVGRSPWLQSVVLNS---KNHNIGDIIKVRITDVKISTLYGELVV 469
                +LVG + +   V++      N  +G +  V++ +     L   L+ 
Sbjct: 699 HMNGDQLVGYNKYYIKVIVKGLENPNTFLGTVQNVKVVNTHKWHLECNLIT 749


>gi|149922745|ref|ZP_01911170.1| tRNA 2-methylthioadenosine synthase -like protein [Plesiocystis
           pacifica SIR-1]
 gi|149816365|gb|EDM75866.1| tRNA 2-methylthioadenosine synthase -like protein [Plesiocystis
           pacifica SIR-1]
          Length = 453

 Score =  272 bits (697), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 121/444 (27%), Positives = 203/444 (45%), Gaps = 32/444 (7%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R  V ++GC++N  +S  + +   + G+E V   + ADL +LN+C I  +A     + + 
Sbjct: 2   RVAVDTHGCRLNQAESDAIAEQLRAAGHELVPRAELADLYLLNSCAITHEADADARAAV- 60

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL--PELLERA 143
                     +    + V+V GC A AE E +    P V  V+G     R   P L+ +A
Sbjct: 61  ------RRARRHNPAVEVIVTGCHANAEPEALAA-MPEVTAVLGNLEKGRAELPRLIAQA 113

Query: 144 RFGKRVVDTD------------YSVEDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFC 190
               R    D                ++ +  S+       R R +   L +Q+GCD  C
Sbjct: 114 LDSARGERADGGAFVSVSRLSRSVRRERPDAWSLPPATSVPRTRPL---LKVQDGCDYQC 170

Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDL 250
           +FC+VP  RG   S  +  +  + R L+D G  E+ L G ++  W G+ L   +   + L
Sbjct: 171 SFCIVPSVRGRSRSLDVETLATQLRGLVDAGHPEVVLTGAHLGLW-GRDLGQGERGLAAL 229

Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL-----DVLMPYLHLPVQSGSDRILKS 305
           +  L       RLR  +  P ++ D L++            L+P+LHLP+Q G D +L++
Sbjct: 230 VAGLRAAVPEARLRLGSVDPHEVDDALVRWVARGVDGRGAGLVPHLHLPIQHGDDGVLRA 289

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           M R H   +  Q+  ++R+  P +AI +D IVGFPGE D  F  T  L + +    A  F
Sbjct: 290 MRRAHRVADLEQLAPKLRAADPHMAIGTDVIVGFPGEDDGAFERTHALFEALAIPFAHVF 349

Query: 366 KYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK 425
            +SPR GTP  ++ ++V     A R   L++++      F D  +G +   ++ +    +
Sbjct: 350 SWSPRSGTPAVDLPDRVPAPTAAARSKALRERVATNWAGFVDGQLGALRSAVVLRRRNRQ 409

Query: 426 GKLVGRSPWLQSVVLNSKNHNIGD 449
           G+LV  +     VVL+  +  +G 
Sbjct: 410 GQLVALTDNYLRVVLDGPDSALGR 433


>gi|156322244|ref|XP_001618317.1| hypothetical protein NEMVEDRAFT_v1g225281 [Nematostella vectensis]
 gi|156198441|gb|EDO26217.1| predicted protein [Nematostella vectensis]
          Length = 514

 Score =  272 bits (697), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 83/306 (27%), Positives = 153/306 (50%), Gaps = 14/306 (4%)

Query: 174 RGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVN 233
               A+    EGC+   +FC++P  RG  +SR + +V+ EA +L+ +GV E+ ++ Q+ +
Sbjct: 212 NAPLAYPKFSEGCNHSGSFCIIPSMRGKLVSRPVGEVLSEAERLVKSGVRELLVISQDTS 271

Query: 234 AW------RGKGLDGE--KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLD 285
           A+      +    +G+  K   +++  +LS +   VRL Y   +P       + A G   
Sbjct: 272 AYGVDVKYKTDFWNGQPVKTRMTEMCEALSSMGVWVRLHYVYPYPHVDELIPLMAAG--- 328

Query: 286 VLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDD 345
            ++PYL +P Q  S ++LK+M R     +    I   R + P++ I S FIVGFPGET++
Sbjct: 329 KILPYLDIPFQHASPKVLKAMKRPAFEDKTLARIKNWREICPELTIRSTFIVGFPGETEE 388

Query: 346 DFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSF 405
           DF+  ++ + +    +   F+YSP  G   + +   V +++K +R        +    + 
Sbjct: 389 DFQYLLNWLTEAQLDRVGCFQYSPVEGAHANLLDNPVPDDIKQDRWDRFMAHQQAISTAR 448

Query: 406 NDACVGQIIEVLIEKHGKEK--GKLVGRSPWLQS-VVLNSKNHNIGDIIKVRITDVKIST 462
               VG+ ++VLI++   +    +    +P +   V + S N N GD ++VRI D     
Sbjct: 449 LQLKVGKEMDVLIDEVDDQGAVARCYADAPEIDGSVFIASTNVNPGDKVRVRIVDADEYD 508

Query: 463 LYGELV 468
           ++ EL+
Sbjct: 509 MWAELI 514



 Score = 88.1 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 34/92 (36%)

Query: 11  AHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC 70
           +H             +    S GC   + DS R+      +GYE V++  DAD++V+NTC
Sbjct: 125 SHTPEVNAMSTPATPKVGFVSLGCPKALVDSERILTQLRMEGYEVVSTYQDADVVVVNTC 184

Query: 71  HIREKAAEKVYSFLGRIRNLKNSRIKEGGDLL 102
              + A  +    +G               L 
Sbjct: 185 GFIDSAKAESLEVIGEAIKENGKASAHNAPLA 216


>gi|149490145|ref|XP_001514441.1| PREDICTED: similar to CDK5 regulatory subunit associated protein
           1-like 1, partial [Ornithorhynchus anatinus]
          Length = 419

 Score =  272 bits (697), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 99/373 (26%), Positives = 177/373 (47%), Gaps = 14/373 (3%)

Query: 100 DLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVED- 158
           D  VV+AGCV QA+  +   +      ++G Q   R+ E++E    G  V       ++ 
Sbjct: 6   DKKVVLAGCVPQAQPRQDYMKG---LSIIGVQQIDRVVEVVEETVKGHSVRLLGQKKDNG 62

Query: 159 KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLI 218
           K    + +D    RK  +   ++I  GC   CT+C   + RG   S  + ++V+ A++  
Sbjct: 63  KRMGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELVERAKQSF 122

Query: 219 DNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLI 278
             GVCEI L  ++  A  G+ +  +  T   LL+ L E+     +              +
Sbjct: 123 QEGVCEIWLTSEDTGA-YGRDIGTDLPT---LLWKLVEVIPEGAMLRLGMTNPPYILEHL 178

Query: 279 KAHGD---LDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDF 335
           +A         +  +LH+PVQS SD +L  M R +   ++++++D ++   P I I++D 
Sbjct: 179 EAMAKILSHPRVYAFLHIPVQSASDSVLMGMKREYCVADFKRVVDFLKEKVPGITIATDI 238

Query: 336 IVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQ 395
           I GFPGETD+DF+ T+ LV+   +   F  ++ PR GTP + M +QV   VK +R   L 
Sbjct: 239 ICGFPGETDEDFQDTVKLVEDYRFPSLFINQFYPRPGTPAAKM-QQVPAQVKKQRTKELS 297

Query: 396 KKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRI 455
           +       +  D  +G+  +VL+ +   +    V  + + + V++      +G +++V I
Sbjct: 298 QLF--HSYNPYDHKIGERQQVLVTEESFDSKFYVAHNRFYEQVLVPKNPQFMGKMVEVDI 355

Query: 456 TDVKISTLYGELV 468
            +     L G+ V
Sbjct: 356 YESGKHFLKGQPV 368


>gi|195952540|ref|YP_002120830.1| MiaB-like tRNA modifying enzyme YliG [Hydrogenobaculum sp. Y04AAS1]
 gi|238066317|sp|B4U6U1|RIMO_HYDS0 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|195932152|gb|ACG56852.1| MiaB-like tRNA modifying enzyme YliG [Hydrogenobaculum sp. Y04AAS1]
          Length = 401

 Score =  272 bits (697), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 107/440 (24%), Positives = 189/440 (42%), Gaps = 46/440 (10%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    + GC  N+ DS  +   F     E ++S   AD +V+NTC   E+A  +    + 
Sbjct: 2   KINFINLGCPKNLVDSENIMGFFKK---ENISSYHRADTVVINTCGFIEQAKRESIEEIL 58

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           +           G    V V GC+     EE+ +  P        +      E +E  + 
Sbjct: 59  KA---------IGDGKKVFVTGCLVYRYKEELQKEIPEAVFFENIKD----LEGIELLQT 105

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            KR + T +                       A+L I EGC++ C+FC +P  RG   S+
Sbjct: 106 PKRQLTTKH----------------------YAYLKIAEGCNRKCSFCAIPNIRGHHRSK 143

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           S+ ++V+EA  L + GV E+ ++ Q+   ++            D L  L        +R 
Sbjct: 144 SIEELVEEAIYLKEKGVKELIIVSQDTLYYQEDNSFKSIIKLLDALEKLD----FPWIRL 199

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
              +P  +S   I    +   ++PY  +P+Q  SD ILKSM R +T  +  +++++I ++
Sbjct: 200 MYLYPNSISKDFIDYIDNSKSVLPYFDIPLQHISDNILKSMRRGYTKKDVFRLLEQINAM 259

Query: 326 RPD-IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           +     + S FIVG+P E + DF   +D + +  +     F+YS   GT      +++ +
Sbjct: 260 KHKKPILRSSFIVGYPTEEERDFEELLDFISQELFHFVGVFEYSHEEGTYAYQFDDKIPK 319

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL-NSK 443
             K  R   +    +E     N A VGQ I++LIEK  K++ +   ++P +  +V     
Sbjct: 320 EEKQRRYKEVFNLSQEILEEKNSALVGQEIDILIEK--KDRARAFFQAPEIDGIVFLEKS 377

Query: 444 NHNIGDIIKVRITDVKISTL 463
           +   G I K ++     + L
Sbjct: 378 SPKTGIIKKAKVIANIGTDL 397


>gi|320538377|ref|ZP_08038252.1| MiaB-like tRNA modifying enzyme [Treponema phagedenis F0421]
 gi|320144762|gb|EFW36503.1| MiaB-like tRNA modifying enzyme [Treponema phagedenis F0421]
          Length = 454

 Score =  272 bits (696), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 114/452 (25%), Positives = 213/452 (47%), Gaps = 41/452 (9%)

Query: 27  FFV--KSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDAD---LIVLNTCHIREKAAEKVY 81
           FF+  ++ GC++N  +S  +  +F  QG++   S  + D   L ++NTC +  KA +K  
Sbjct: 6   FFICPETLGCRLNQVESESLAVLFSLQGFQVHVSPQEPDHTILCIVNTCTVTSKAEQK-- 63

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGP--QTYYRLPEL 139
                 R L    +++    +++V GC A+ EG  I      V    G       +LP+L
Sbjct: 64  -----ARRLIRLLLQKFPYAVILVTGCYAELEGRTIETIDSRVISFPGKKKDALKKLPKL 118

Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVD---------------GGYNRKRGVTAFLTIQE 184
           L +      +  TD  + D  E L  +                   +      A L IQ+
Sbjct: 119 LYQLLEKNSMRLTDSYIADVSEILQFLQNTDLDSKKDSEMFALSTAHFLFHSRATLKIQD 178

Query: 185 GCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK 244
           GC+  C +C + + RG  +S  +++V+  A+ + D G  E+ L G N++ ++ +G +   
Sbjct: 179 GCNSACAYCRIRFARGKSVSLPVTEVIRRAQAIEDEGFAELVLSGVNLSQYKSEGKN--- 235

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304
             F+D+L  L +    + +R ++ +P  ++   +K   +   + P+ HL +QSGS+ IL 
Sbjct: 236 --FADVLQQLLDETKKIHIRISSLYPESITPTFLKV-AENPRIAPHFHLSIQSGSNAILN 292

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
           +M+R +TA +   ++  +RS++ +  +  D I GFPGET +DF  T+ L   + +    +
Sbjct: 293 AMHRAYTADDIVSVVTALRSIKENPFLGCDIIAGFPGETAEDFEKTLSLCTDLRFTGIHA 352

Query: 365 FKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE 424
           F +S R GT  + M  QV + +  +R+  LQ   +E    +     G+ +  ++EK+  +
Sbjct: 353 FPFSARPGTEAAGMKGQVPQRIAGKRVAMLQALAKEHYKDYLAYWDGKTLFAVVEKYTDK 412

Query: 425 KGKLVGRSPWLQSVVLNSKNHNI-GD--IIKV 453
              L   +    S+  +    ++ G   IIKV
Sbjct: 413 PQVL---TENYLSLPFDCNEKDLQGKAVIIKV 441


>gi|94267152|ref|ZP_01290784.1| Protein of unknown function UPF0004 [delta proteobacterium MLMS-1]
 gi|93452120|gb|EAT02794.1| Protein of unknown function UPF0004 [delta proteobacterium MLMS-1]
          Length = 323

 Score =  272 bits (696), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 96/299 (32%), Positives = 149/299 (49%), Gaps = 8/299 (2%)

Query: 173 KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNV 232
                A+L + EGCD  C++C++P  RG   SR L  ++ EAR L   GV E+TL+ Q++
Sbjct: 22  TPSHRAYLKVTEGCDNRCSYCLIPALRGPLRSRPLPDLLLEARALAAAGVKELTLVAQDL 81

Query: 233 NAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLH 292
            A  G    G      +LL +L     +  LR    +P  + + L++   +   L+PY  
Sbjct: 82  TA-YGLDQRGAP-RLPELLKALLAETAIPWLRLLYLYPSRVDEGLLRLVAENPRLLPYFD 139

Query: 293 LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352
           LP Q  +D +LK+MNR +     RQ++ RIR + P+ AI S FIVGFPGE+++D +    
Sbjct: 140 LPFQHVADHLLKAMNRPYGEKLIRQLVGRIRQLVPEAAIRSTFIVGFPGESEEDSQRLAA 199

Query: 353 LVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQ 412
            +      Q   F Y P  G+P + + +Q D+ +K  R   L     +  +  N A +G 
Sbjct: 200 FLRDCRLEQVGIFTYYPEEGSPAAELPDQCDDQLKEGRRRQLMALQADISLQINRARIGT 259

Query: 413 IIEVLIEKHGKEKGKLV-GR----SPWLQS-VVLNSKNHNIGDIIKVRITDVKISTLYG 465
             EVL+E    E   L+ GR    +P +   V +   N   GD+++VRI +     L G
Sbjct: 260 RQEVLVEGVSAETDLLLEGRLRQQAPEVDGCVYITEGNCRPGDLVQVRIDEAHPYDLVG 318


>gi|46579310|ref|YP_010118.1| RNA modification protein [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|46448724|gb|AAS95377.1| RNA modification enzyme, MiaB-family [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|311233137|gb|ADP85991.1| RNA modification enzyme, MiaB family [Desulfovibrio vulgaris RCH1]
          Length = 458

 Score =  272 bits (696), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 111/422 (26%), Positives = 189/422 (44%), Gaps = 33/422 (7%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           F   ++GC++N Y++  + + +  +G+  V++ + AD+I++NTC +  +A   V   + R
Sbjct: 8   FHAATFGCKVNQYETQSLREAWLRRGFTEVDTPEGADVILVNTCAVTARAVSDVRRAIAR 67

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           +        +      +VV GC AQ   EE      +V VV  PQ         + A   
Sbjct: 68  LH-------RAAPAAGIVVTGCAAQVLREEFAGLPGVVAVV--PQEAKATLAAYDPAAAI 118

Query: 147 KRVVDTDYSVEDKFERLS---------------IVDGGYNRKRGVTAFLTIQEGCDKFCT 191
              V T  +  D     +                 D      R     + +Q+GC   CT
Sbjct: 119 MPPVSTHAAHGDAATAQASSATSGDVVPAQASVFPDFRIEGFRRARPVVKVQDGCSHRCT 178

Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLL 251
           +C+VP TRG   SR   +VV E R+L+D G  E+ L G N+    G+ L G    F DLL
Sbjct: 179 YCIVPLTRGASRSREPGEVVAELRRLLDAGFREVMLSGVNLR-LYGRDLSGAG-DFWDLL 236

Query: 252 YSLS-----EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306
             +      E  G  RLR ++  P  +    +   G   ++ P LHL +QSGS  +L+ M
Sbjct: 237 QRVERELAPEWAGRARLRISSLEPGQLGVHALDVLGGSRLVCPQLHLSLQSGSPDVLRRM 296

Query: 307 NRR-HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
            R  ++       +  +    P   + +D ++GFPGE++D F  T+D V  +    A  F
Sbjct: 297 GRGHYSPAPLLDFLRDLGGTWPVFGLGADILMGFPGESEDAFAETLDFVRALPLTYAHVF 356

Query: 366 KYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQI-IEVLIEKHGKE 424
            YS R GT  +++ E + + ++  R   ++  + +++  F +   G   + V+++  G  
Sbjct: 357 PYSRRPGTVAASLPEHLPQEIRKARAAAVRDVVAQKRAVFAERLAGLPALSVVLDGAGAR 416

Query: 425 KG 426
           KG
Sbjct: 417 KG 418


>gi|327398341|ref|YP_004339210.1| MiaB-like tRNA modifying enzyme [Hippea maritima DSM 10411]
 gi|327180970|gb|AEA33151.1| MiaB-like tRNA modifying enzyme [Hippea maritima DSM 10411]
          Length = 410

 Score =  272 bits (695), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 107/429 (24%), Positives = 193/429 (44%), Gaps = 42/429 (9%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +  +K+ GC++N Y++  M +    +G+E V+  D A+  ++N+C +  KA+++      
Sbjct: 2   KIAIKTLGCKLNQYETQLMIEDLTKEGHEIVDFEDMANFYIINSCAVTAKASKESRLLAK 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                            VV  GC +  E E++  R     ++ G    +++ +L++    
Sbjct: 62  SAAK----------RGRVVYTGCDSYLE-EKLKDRF----ILAGNSYKHKIIKLIKNPIN 106

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                  D S E K   L  +   Y  K    AF+ IQEGC+  CT+C++ + RG E  +
Sbjct: 107 -------DISDETKTYPLERILSQYRGKS--RAFVKIQEGCNNHCTYCIISFLRGRERDK 157

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
              +V+ E   L   G  EI L G N+ ++R             LL  +  ++G  R+R 
Sbjct: 158 EKDKVLSEIESLAKAGFSEIVLTGTNIGSYR---------DLKGLLRDIDALEGDFRVRI 208

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
           ++  P  +    I           +LH+P+QSGS++ILK M R +    Y +I++     
Sbjct: 209 SSIEPMYVDKEFIDIVA-SGRFANHLHIPLQSGSNKILKLMGRNYKREHYEKIVNYCHKK 267

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE- 384
              + +  D IVGF GETD+ F  T   V ++  + A  F YS R  TP  N+   + + 
Sbjct: 268 --GVFVGCDIIVGFFGETDELFEETYWFVKRLPLSYAHVFSYSKRPNTPAYNLKLDLPKG 325

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE--KHGKEKGKLV-GRSPWLQSVVLN 441
            V  +R   L++   +++ +     +G+ +E +IE  +   +KG+     +     V+++
Sbjct: 326 PVVRQRNRKLRELFEQKKKNSIKQMIGKEVEFIIETTQVNTQKGRFYKAITSQYFPVLVD 385

Query: 442 --SKNHNIG 448
                  IG
Sbjct: 386 RYDTGLKIG 394


>gi|307637422|gb|ADN79872.1| Ribosomal protein S12p Asp88 methyl thio transferase [Helicobacter
           pylori 908]
 gi|325996012|gb|ADZ51417.1| Ribosomal protein S12p methylthiotransferase/Ribosome maturation
           factor [Helicobacter pylori 2018]
 gi|325997607|gb|ADZ49815.1| Ribosomal protein S12p methylthiotransferase [Helicobacter pylori
           2017]
          Length = 439

 Score =  272 bits (695), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 96/428 (22%), Positives = 187/428 (43%), Gaps = 30/428 (7%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++  + S GC  N+ DS  M        Y   N    AD+I++NTC   E A ++    +
Sbjct: 7   KQLCLISLGCSKNLVDSEVMLGKL--YNYTLTNDAKKADVILINTCGFIESAKQESIQTI 64

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
                 K          +++ +GC+++   +EI    P V++  G   Y ++  L+  A+
Sbjct: 65  LNAAKDKKE------GAILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDILI--AK 116

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
              +  +  +  E    R+            V A++ I EGC++ C+FC +P  +G   S
Sbjct: 117 KQNQFSEQVFLSEHYNARI-------ITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQS 169

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R L  ++ E   L   G  ++T + Q+ +++      G+K     L+ ++ + + L   R
Sbjct: 170 RELDSILKEVEDLALKGYKDMTFIAQDSSSFLYD--KGQKDGLIQLIKAIDKQQALKSAR 227

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
               +P   +  LI A  D  +   Y  +P+Q  SD +LK M R  +   + +++D ++ 
Sbjct: 228 ILYLYPSSTTLELIGAIEDSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQ 287

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           V+    I S  IVG P E + +F      +D+  + +   F +S    T   ++ E+V +
Sbjct: 288 VKESF-IRSTIIVGHPEENEGEFEELSAFLDEFRFDRLNIFAFSAEENTHAYSL-EKVPK 345

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV--GR----SPWLQSV 438
            +   R+  L K   + Q     A + + I+ L+E   +++G+     R    +P +   
Sbjct: 346 KIINARIKALNKIALKHQNHSFKALLNKPIKALVE---RKEGEYFYKARDLRWAPEVDGE 402

Query: 439 VLNSKNHN 446
           +L + +  
Sbjct: 403 ILINDSAL 410


>gi|224436917|ref|ZP_03657898.1| hypothetical protein HcinC1_03045 [Helicobacter cinaedi CCUG 18818]
 gi|313143389|ref|ZP_07805582.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818]
 gi|313128420|gb|EFR46037.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818]
          Length = 447

 Score =  271 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 98/457 (21%), Positives = 208/457 (45%), Gaps = 35/457 (7%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
             + S GC  N+ DS  M     S  Y+    +  AD+I++NTC   E A ++    +  
Sbjct: 8   LHLISLGCTKNLVDSEVMLGKLKS--YQLTPEITKADIIIVNTCGFIESAKQESIQTILE 65

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
              L+          ++VV+GC+++   +E+ +  P ++++ G   Y ++  +++  +  
Sbjct: 66  ASALRK------IGAVLVVSGCLSERYAKELKKEIPEIDIITGVGDYDKIDVMVKELKSL 119

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           +      +   +  ER+ I            A++ + EGC++ C+FC +P  +G   SR+
Sbjct: 120 QSQR--VFLATESNERVII-------GSSFHAYIKLSEGCNQSCSFCAIPSFKGKLHSRT 170

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
           L   + E + L + G  + + + Q+ ++   + L G+K    +L+ ++  ++  +  R  
Sbjct: 171 LDSTIKELQSLYERGFRDFSFIAQD-SSSYLRDL-GQKDGLIELIKAIDNLQLPISCRIL 228

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
             +P   +  LI+   +    +PY  +P+Q  +D +LK M R     ++ ++++ +R   
Sbjct: 229 YLYPTTTTLELIETIANSTCFLPYFDMPIQHIADSMLKLMRRGANRAKHIELLESMRK-I 287

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           P   I + F++G PGE + +FR   D V+   + +   F YSP++GT   +M + V    
Sbjct: 288 PKSFIRTSFVIGHPGEGEKEFRELHDFVEGFNFDRINLFAYSPQVGTFAYDMPQSVSVKT 347

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GRS----PWLQSVVLN 441
             ER+  L + ++ Q  + + A +GQ +  + E   +        R       +   +L 
Sbjct: 348 TNERINKLNRIVKSQFKAHSKALLGQEVIAICEGKSEISEYFYKARLQPWGKDIDGEILI 407

Query: 442 SKNH---NIGDI-------IKVRITDVKISTLYGELV 468
           + +    N+G +        ++ IT+ K   L+   +
Sbjct: 408 NDSEICDNLGQMLPLDEGYYRILITEQKQDFLFARAL 444


>gi|225619898|ref|YP_002721155.1| MiaB-like tRNA modifying enzyme [Brachyspira hyodysenteriae WA1]
 gi|225214717|gb|ACN83451.1| MiaB-like tRNA modifying enzyme [Brachyspira hyodysenteriae WA1]
          Length = 417

 Score =  271 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 107/422 (25%), Positives = 201/422 (47%), Gaps = 30/422 (7%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
             + ++GC++N Y+S ++     + G      +D+A+ I +NTC +   + +K+ S+L +
Sbjct: 3   IHIHTFGCRLNQYESEKISYELKNLGANITE-LDNAEAIAINTCTVTNDSDKKLMSYLEK 61

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           + +++N          V + GC    + ++       + ++                   
Sbjct: 62  LGDIQNK--------KVFLIGCYVSKKDKDSSIFKDNIVLIPN--------------EKK 99

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           +   +  ++         I +  +  +    A+L IQ+GC+ FCT+C+V   RG   S  
Sbjct: 100 EEASEIIFNTLYNNSNNKIDNPIFFPQEQSRAYLKIQDGCNVFCTYCIVSRVRGSHRSVE 159

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL--VRLR 264
            S++ D  +   D    EI L G N+ ++        +  F+ +L ++ E      +R+R
Sbjct: 160 PSKIYDAVKMANDFNYKEIVLTGLNLGSYNYN----NEINFTKILQNILEYSSKYGIRIR 215

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
            ++  P    D LI    + D+L P+ H+P+QSGS++ILK MNRR+T  +Y  I +++  
Sbjct: 216 LSSIEPIYFDDGLISLFKNDDILCPHAHIPLQSGSNKILKLMNRRYTREDYLNITEKLYK 275

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
              +++ISSD +VGFP E ++DF  T +L +K  + +   F+YS R  TP S M  QV  
Sbjct: 276 TNSNMSISSDVMVGFPHEDNNDFNDTYELCEKSKFIKIHIFRYSNRENTPSSKMDNQVGY 335

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
             K +R   L     + + S+     G+ ++++IEK  ++    +G S       L+S+N
Sbjct: 336 RTKLKRAKTLNNLNNKLKDSYYKNAEGRDLKIVIEKALQDNN-YIGTSAEYLKCKLHSEN 394

Query: 445 HN 446
             
Sbjct: 395 AL 396


>gi|317178909|dbj|BAJ56697.1| hypothetical protein HPF30_0600 [Helicobacter pylori F30]
          Length = 439

 Score =  271 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 96/427 (22%), Positives = 187/427 (43%), Gaps = 28/427 (6%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++  + S GC  N+ DS  M        Y   N    AD+I++NTC   E A ++    +
Sbjct: 7   KQLCLISLGCSKNLVDSEVMLGKL--YNYTLTNDTKSADVILINTCGFIESAKQESIQTI 64

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
                 K          +++V+GC+++   +EI    P V++  G   Y ++  ++  A+
Sbjct: 65  LNAAKDKK------RGAILIVSGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMI--AK 116

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
              +  +  +  E    R+            V A++ I EGC++ C+FC +P  +G   S
Sbjct: 117 KQNQFSEQVFLSEHYNARI-------ITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQS 169

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R L  ++ E   L+  G  ++T + Q+ +++      G+K     L+ ++ + + L   R
Sbjct: 170 RELDSILKEVENLVLKGYRDMTFIAQDSSSFLYD--KGQKDGLIQLIKAIDKQQALKSAR 227

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
               +P   +  LI A     +   Y  +P+Q  SD +LK M R  +   + +++D ++ 
Sbjct: 228 ILYLYPSSTTLELIGAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQ 287

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           V+ +  I S  IVG P E + +F      +D+  + +   F +S    T   ++ E+V +
Sbjct: 288 VK-ECFIRSTIIVGHPEENEGEFEELSAFLDEFRFDRLNIFAFSAEENTHAYSL-EKVPK 345

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GR----SPWLQSVV 439
            +   R+  L K   + Q +   A + + I+ L+E   KE       R    +P +   +
Sbjct: 346 KIINARIKALNKIALKHQNNSFKALLNKPIKALVE--NKEGEYFYKARDLRWAPEVDGEI 403

Query: 440 LNSKNHN 446
           L + +  
Sbjct: 404 LINDSEL 410


>gi|304320388|ref|YP_003854031.1| hypothetical protein PB2503_04072 [Parvularcula bermudensis
           HTCC2503]
 gi|303299290|gb|ADM08889.1| hypothetical protein PB2503_04072 [Parvularcula bermudensis
           HTCC2503]
          Length = 384

 Score =  271 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 110/413 (26%), Positives = 184/413 (44%), Gaps = 37/413 (8%)

Query: 54  ERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAE 113
           E   +   A ++V+NTC +  +A  +    + R R       K+  +  ++V+GC  + +
Sbjct: 3   ELAGTEGTA-VVVINTCAVTNEAVRQSRQAIRRAR-------KDHPEAKLIVSGCAVETD 54

Query: 114 GEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRK 173
            + +    P ++ ++      +                                      
Sbjct: 55  RDRLAA-MPEIDHLIPNADKLKPESYAGATA-----------------------PLSRSP 90

Query: 174 RGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVN 233
           + V A L IQ GCD  CTFC++P  RG   SR +++ V EA  L+  G  EI L G ++ 
Sbjct: 91  QPVRAPLAIQNGCDHSCTFCIIPQGRGRAQSRPIAEAVAEAHALVAAGAREIVLTGVDLT 150

Query: 234 AWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHL 293
           +  G  L+G       +   L+ +   + LR ++    ++ D L +   + D + PY HL
Sbjct: 151 S-YGDDLEGGVTLADPIEVLLTSLPAAITLRLSSLDGAEVDDRLFRLLTEEDRVAPYAHL 209

Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
            +Q+G D  LK M RRH   +   + DR+R+ RPD A  +D I GFP ET++ F A++D 
Sbjct: 210 SLQAGHDLTLKRMKRRHLTADAIDLTDRLRTARPDFAFGADLIAGFPTETEEMFAASLDH 269

Query: 354 VDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQI 413
             + G A    F +SPR+GTP + M  Q+D  V  +R   L+    +   +  D  +GQ 
Sbjct: 270 AARCGLAFLHVFPFSPRVGTPAARMP-QIDRAVVKDRAKRLRALGDDLLAAHLDRLIGQR 328

Query: 414 IEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGE 466
           + VLIE+       L+GR P    + + ++    G+ I   +T      L G 
Sbjct: 329 VAVLIEQTS--GTHLIGRLPNFTEIEVEAEG-QAGERIMAHVTGHTGRRLMGR 378


>gi|222823704|ref|YP_002575278.1| MiaB-like tRNA modifying enzyme [Campylobacter lari RM2100]
 gi|222538926|gb|ACM64027.1| MiaB-like tRNA modifying enzyme [Campylobacter lari RM2100]
          Length = 418

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 100/424 (23%), Positives = 199/424 (46%), Gaps = 33/424 (7%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + Q+ + K++GC+ N+YD+  ++       +E V +  +AD+I++N+C +   A   + +
Sbjct: 1   MKQKVYFKTFGCRTNIYDTQLIKTYIKD--HEIVQNEQEADVIIINSCTVTNGADSGLRT 58

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
           ++  ++            + V++ GC A ++G++   +   V  V+G     ++ EL+  
Sbjct: 59  YINSVKK---------NGVKVILTGCGAISKGKDFFDK-KEVFGVLGASNKSKINELIMS 108

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            +    + D       KF    IV    N  +   AF+ IQEGCD  C++C++P  RG  
Sbjct: 109 KKEFYEIGDL------KFIDTKIVSDYENHTK---AFVKIQEGCDFACSYCIIPSVRGKS 159

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            S    +++ + + L  NG  E+ L G N+ ++  K     K T   LL  + +I G+ R
Sbjct: 160 RSIPSDEIIKQIKLLAQNGYSEVVLTGTNIGSYGLKD----KTTLGKLLQEIGKINGIKR 215

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R  +  P  + +   K   D   L  +LH+ +Q   +++L+ M RR        + + +
Sbjct: 216 VRLGSLEPAQIDESF-KEILDEPWLERHLHIALQHTHEKMLRIMRRRSHTQNDLALFNEL 274

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
                  A+ +DFIV  PGE++  ++  ++           +F +SPR GT  ++M E++
Sbjct: 275 SQK--GFALGTDFIVAHPGESELIWQEALENFKHFKLTHIHAFIFSPRDGTHSASMKERI 332

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQI-IEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           +  +  ERL  L+  + +    F      ++ +E+L+E   K+     G   +   + ++
Sbjct: 333 NGEIAKERLNILKDIVFQNNYEFRKNH--KVKLEILVE--NKKGEFYEGYDQFFNKIKIS 388

Query: 442 SKNH 445
           SK  
Sbjct: 389 SKED 392


>gi|300710670|ref|YP_003736484.1| MiaB-like tRNA modifying enzyme [Halalkalicoccus jeotgali B3]
 gi|299124353|gb|ADJ14692.1| MiaB-like tRNA modifying enzyme [Halalkalicoccus jeotgali B3]
          Length = 414

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 114/449 (25%), Positives = 197/449 (43%), Gaps = 43/449 (9%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R+ +++YGC  N  +S  +E      G+ R     +AD+ +LNTC + EK      + L 
Sbjct: 3   RYHIETYGCTSNRGESRAIESALRDAGHYRAAGPAEADVAILNTCTVVEKTE---TNMLR 59

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R + L+           ++V GC+A A+ E        V             E+ + A  
Sbjct: 60  RAKELEEE------TTDLIVTGCMALAQSEAFSDVDARV---------MHWDEVPQAALN 104

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G              E  +   G      GV   L I  GC   C++C+  +  G   S 
Sbjct: 105 G--------------ECPTPGPGVEPVLEGVVGILPIARGCMSNCSYCITKHATGRVDSP 150

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           ++   V++AR L+  G  E+ + GQ+   +   G D  + +  +LL  +  I+G  R+R 
Sbjct: 151 TIEANVEKARALVHAGAKELRITGQDTGVY---GWDDGERSLPELLSRICAIEGEFRVRL 207

Query: 266 TTSHP---RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
             ++P     + + L +   + + L  ++H PVQSGSD +L+ M R+H   ++R+I+   
Sbjct: 208 GMANPGGIHGIHEELAEVFAENEKLYDFIHAPVQSGSDEVLEEMRRQHKVEKFREIVKTF 267

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
                   +S+DFIVGFP ET+ D   +MDL+ +I   +    ++S R  T  ++M   +
Sbjct: 268 DRELDHWTLSTDFIVGFPTETEADHELSMDLLREIRPEKVNVTRFSKRPKTDAADMKG-L 326

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
              +K ER   + +  RE      +  VG   EVL  + G     +  R P  + V++ +
Sbjct: 327 GGTIKKERSKAMSEAKREIVGEVYEGMVGDTCEVLCVQPGT-GDSVKCRDPAYRQVIVQN 385

Query: 443 KNH---NIGDIIKVRITDVKISTLYGELV 468
            +      GD  +  IT  +    +G+ V
Sbjct: 386 ASEYGIEPGDFFEAEITASQTMYAFGKPV 414


>gi|298736436|ref|YP_003728962.1| hypothetical protein HPB8_941 [Helicobacter pylori B8]
 gi|298355626|emb|CBI66498.1| conserved hypothetical protein [Helicobacter pylori B8]
          Length = 439

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 95/427 (22%), Positives = 183/427 (42%), Gaps = 28/427 (6%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++  + S GC  N+ DS  M        Y   N    AD+I++NTC   E A ++    +
Sbjct: 7   KQLCLISLGCSKNLVDSEVMLGKL--YNYTLTNDAKKADVILINTCGFIESAKQESIQTI 64

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
                 K          +++ +GC+++   +EI    P V++  G   Y ++  ++  A+
Sbjct: 65  LNAAKDKKE------GAILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMI--AK 116

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
              +  +  +  E    R+            V A++ I EGC++ C+FC +P  +G   S
Sbjct: 117 KQNQFSEQVFLSEHYNARI-------ITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQS 169

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R L  ++ E   L   G  ++T + Q+ +++      G+K     L+ ++ + + L   R
Sbjct: 170 RELDSILKEVEDLALKGYKDMTFIAQDSSSFLYD--KGQKDGLIQLIRAIDKQQALKSAR 227

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
               +P   +  LI A     +   Y  +P+Q  SD +LK M R  +   + +++D ++ 
Sbjct: 228 ILYLYPSSTTLELIGAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQ 287

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           V+    I S  IVG P E + +F      +D+  + +   F +S    T   ++ E+V +
Sbjct: 288 VKESF-IRSTIIVGHPEENEGEFEELSAFLDEFRFDRLNIFAFSAEENTHAYSL-EKVPK 345

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GR----SPWLQSVV 439
            +   R+  L K   + Q     A + + I+ L+E   KE       R    +P +   +
Sbjct: 346 KIINARIKALNKIALKHQNHSFKALLNKPIKALVE--NKEGEYFYKARDLRWAPEVDGEI 403

Query: 440 LNSKNHN 446
           L + +  
Sbjct: 404 LINDSEL 410


>gi|154175462|ref|YP_001408235.1| hypothetical protein CCV52592_1067 [Campylobacter curvus 525.92]
 gi|112802784|gb|EAU00128.1| conserved hypothetical protein [Campylobacter curvus 525.92]
          Length = 416

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 105/431 (24%), Positives = 205/431 (47%), Gaps = 31/431 (7%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + Q+ F K++GC+ N+YD+  M+       YE  N  + AD++V+N+C +   A   V +
Sbjct: 1   MMQKIFFKTFGCRTNIYDTELMKSYVKD--YEITNDEEIADVVVINSCTVTNSADSGVRN 58

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
           ++  ++              V++ GC A ++G+E+  +   +  V+G      +  LL  
Sbjct: 59  YINGVKR---------RGAKVILTGCGAVSKGKELFDKD-AIFGVMGASQKANINSLLSS 108

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            +    + D +   ++              +    AF+ IQEGC+  C++C++P  RG  
Sbjct: 109 KQRFFELGDLNSIDKNIVTSY---------ENHTKAFIKIQEGCNFACSYCIIPSVRGKA 159

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            S   + +++EA+ L  NG  E+ L G N+ +  GK       +   LL +L +I G+ R
Sbjct: 160 RSMDENSIINEAKILAANGYNELVLTGTNIGS-YGKDT---GSSLGRLLANLGKIPGIRR 215

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R  +  P  + +   +   +   L  +LH+ +Q  S+++L+ M RR+ A+   ++ + +
Sbjct: 216 IRLGSIEPSQIDESFREILKES-WLERHLHIALQHTSEKMLRIMRRRNQAFSDLELFNEL 274

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
            S+    A+ +DFIVG PGE+++ +   ++   K       +F YSPR  T  + M   V
Sbjct: 275 SSL--GFALGTDFIVGHPGESEEIWAEALENFKKFPLTHLHAFAYSPRANTHSATMKAGV 332

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
             +V  ERL  L++   +  ++F      + ++VL+EK  K      G   +   + ++S
Sbjct: 333 GGDVAKERLNLLKQITAQNNLNFRKRHK-ENLKVLVEK--KNADLYEGFDQFYNKLRIDS 389

Query: 443 KNHNIGDIIKV 453
                 + ++V
Sbjct: 390 ARDISKEWLEV 400


>gi|291276741|ref|YP_003516513.1| MiaB-like tRNA modifying enzyme [Helicobacter mustelae 12198]
 gi|290963935|emb|CBG39772.1| Putative MiaB-like tRNA modifying enzyme [Helicobacter mustelae
           12198]
          Length = 413

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 106/429 (24%), Positives = 193/429 (44%), Gaps = 30/429 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + F K++GC+ N++D+  M        +    + ++AD+IV+N+C +   A   V S++ 
Sbjct: 2   KVFFKTFGCRTNLFDTQVMRQNLKD--FVVCENEEEADIIVVNSCTVTNGADAGVRSYVN 59

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           ++               +   GC A+ +G+ +  ++ +               LL + RF
Sbjct: 60  KMNR---------SGKKIYFTGCGAKTQGKNLFDKNLVFGSFGHTHKEKINDFLLAKGRF 110

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                   +  E                  V AF+ IQEGCD  C++C++P  RGI  S 
Sbjct: 111 --------FYEERSDASHIDTTLVSEFVGKVRAFIKIQEGCDFACSYCIIPSVRGISRSY 162

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
             ++V+++   L D+GV E+ L G NV +  GK         + L++ +S+IKG++R+R 
Sbjct: 163 PQARVLEQIGILADHGVSEVVLTGTNVGS-YGKDF---GSNIAKLIHEISKIKGILRIRI 218

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
            +  P  + +  ++   + D L  +LH+ +Q  SDR+L+ MNR +     R ++++I   
Sbjct: 219 GSLEPSQIDEEFLELL-EGDFLERHLHIALQHSSDRMLEIMNRHNRVASDRALLEKIADR 277

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
               AI +DFIVG PGE+   +   ++ + ++       F YS R  TP + M   +  +
Sbjct: 278 --GFAIGTDFIVGHPGESVQVWEEALENLTQLPLTHIHPFIYSIRDNTPSAKMKNTIRGD 335

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445
           V  ERL  +   + E+  SF        + VL+E    + G   G   +   + + S   
Sbjct: 336 VAKERLHIINALVAEKNFSFRQKM--SPLRVLVE--SGKDGLYSGLDQFFNRISIKSAKD 391

Query: 446 NIGDIIKVR 454
                + V 
Sbjct: 392 LKNCWVDVE 400


>gi|149193779|ref|ZP_01870877.1| MiaB-like tRNA modifying enzyme [Caminibacter mediatlanticus TB-2]
 gi|149135732|gb|EDM24210.1| MiaB-like tRNA modifying enzyme [Caminibacter mediatlanticus TB-2]
          Length = 405

 Score =  271 bits (692), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 115/435 (26%), Positives = 215/435 (49%), Gaps = 37/435 (8%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + F K++GC+ N++D+  M+++   +  + V + +DAD+I++N+C +   A   + S++ 
Sbjct: 2   KVFFKTFGCRSNIFDTEIMKNILKEK-VDIVKNENDADIIIVNSCTVTNFADRDIRSYVN 60

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           +  N K           ++  GC A  +GE++  +   V  V+G +    + + L+    
Sbjct: 61  KFSNKK-----------IIFTGCGAYTQGEKLF-KESKVFNVLGHKFKEEIDKFLD--FK 106

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G  + D D+  +   E                AF+ IQEGCD  C +C++P  RG   S 
Sbjct: 107 GINLGDFDFVNKKIVESFD----------KTKAFIKIQEGCDFECAYCIIPKVRGSSRSI 156

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
             S +++E +KL DNG+ E  L G N+ +  GK  +    + S L+  +S I+G+ R+R 
Sbjct: 157 EESLILEEIKKLRDNGISEFVLTGINMGS-YGKDTN---TSLSKLIEKISNIRGVKRIRL 212

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
            +  P  + D LI+      +L  +LH+ +Q  SD++L+ M RR+       + +R+ S+
Sbjct: 213 GSLEPSQIDDRLIE-LTQNGILEKHLHIALQHTSDKMLRIMKRRNRVSSTLPLFERLASM 271

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
             +IA+ +DFIVG PGE+++ F   +    K        F+YSPR GT  + M + V  +
Sbjct: 272 --NIALGTDFIVGHPGESEEIFNEALSNFKKYPLTHIHLFRYSPREGTLSATMKQDVKGD 329

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445
           V  +R   L++ +++    F     G   EV +    K+ G  +G   +   + +    +
Sbjct: 330 VSKKRAKILEEIVKKNNYEFRKKQ-G---EVFVHIEDKKDGYSIGYDEFYNKMKIKGDFY 385

Query: 446 NIGDIIKVRITDVKI 460
             G+ ++++  +VK 
Sbjct: 386 K-GEWMRIKDYEVKE 399


>gi|120603130|ref|YP_967530.1| RNA modification protein [Desulfovibrio vulgaris DP4]
 gi|120563359|gb|ABM29103.1| RNA modification enzyme, MiaB family [Desulfovibrio vulgaris DP4]
          Length = 458

 Score =  271 bits (692), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 110/422 (26%), Positives = 188/422 (44%), Gaps = 33/422 (7%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           F   ++GC++N Y++  + + +  +G+  V++ + AD+I++NTC +  +A   V   + R
Sbjct: 8   FHAATFGCKVNQYETQSLREAWLRRGFTEVDTPEGADVILVNTCAVTARAVSDVRRAIAR 67

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           +        +      +VV GC AQ   EE      +V VV  PQ         + A   
Sbjct: 68  LH-------RAAPAAGIVVTGCAAQVLREEFAGLPGVVAVV--PQEAKATLAAYDPAAAI 118

Query: 147 KRVVDTDYSVEDKFERLS---------------IVDGGYNRKRGVTAFLTIQEGCDKFCT 191
              V T  +  D     +                 D      R     + +Q+GC   CT
Sbjct: 119 MPPVSTHDAHCDAATAQASSATSGDVVPAQASVFPDFRIEGFRRARPVVKVQDGCSHRCT 178

Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLL 251
           +C+VP TRG   SR   +VV E R+L+D G  E+ L G N+    G+ L G    F DLL
Sbjct: 179 YCIVPLTRGASRSREPGEVVAELRRLLDAGFREVMLSGVNLR-LYGRDLSGAG-DFWDLL 236

Query: 252 YSLS-----EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306
             +      E  G  RLR ++  P  +    +   G   ++ P LHL +QSGS  +L+ M
Sbjct: 237 QRVERELAPEWAGRARLRISSLEPGQLGAHALDVLGGSRLVCPQLHLSLQSGSPDVLRRM 296

Query: 307 NRR-HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
            R  ++       +  +    P   + +D ++GFPGE++D F  T+D    +    A  F
Sbjct: 297 GRGHYSPAPLLDFLRDLGGTWPVFGLGADILMGFPGESEDAFAETLDFARALPLTYAHVF 356

Query: 366 KYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQI-IEVLIEKHGKE 424
            YS R GT  +++ E + + ++  R   ++  + +++  F +   G   + V+++  G  
Sbjct: 357 PYSRRPGTVAASLPEHLPQEIRKARAAAVRDVVAQKRAVFAERLAGLPALSVVLDGAGAR 416

Query: 425 KG 426
           KG
Sbjct: 417 KG 418


>gi|323137809|ref|ZP_08072884.1| MiaB-like tRNA modifying enzyme [Methylocystis sp. ATCC 49242]
 gi|322396812|gb|EFX99338.1| MiaB-like tRNA modifying enzyme [Methylocystis sp. ATCC 49242]
          Length = 385

 Score =  271 bits (692), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 119/423 (28%), Positives = 188/423 (44%), Gaps = 59/423 (13%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + +   V ++GC++N+ DS  +                + + I++NTC +  +A  +   
Sbjct: 4   MARNVEVVTFGCRLNMVDSEELARR----------HEGERETIIVNTCAVTGEATRQARQ 53

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            + R+        +E  +  +VVAGC A+ + +        V+ V+  Q   R     E 
Sbjct: 54  AIRRLH-------RERPEAEIVVAGCAARIDPQA-FTSIEGVSRVIAEQAQNRAAAAEE- 104

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
                                           G  AFL IQ GCD  CTFC++P  RG  
Sbjct: 105 --------------------------------GTRAFLAIQNGCDHSCTFCIIPLGRGAS 132

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            S    ++V +AR L++ G  EI L G ++ ++     DG +      L    EI  L R
Sbjct: 133 RSAPPQEIVAQARALVERGKQEIALTGVDLTSY---DADGLRLGGLVRLLL-REIPDLPR 188

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LR ++    +  D LI A  + + L P+LHL +Q+G D ILK M RRH+  E  +    +
Sbjct: 189 LRLSSIDCIEADDDLIVAAAEEERLCPHLHLSLQAGDDLILKRMKRRHSRAEAIRFCGEL 248

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R  RPDI   +DFI GFP ET++ F  T+ LV++ G      F +SPR GTP + M  QV
Sbjct: 249 RDARPDIVFGADFITGFPTETEEMFTRTLGLVEECGLTHLHVFPFSPRPGTPAARMP-QV 307

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG--KEKGKLVGRSPWL-QSVV 439
              V  ER   L++          D   G+ + +L E+ G  +       R+P +   V+
Sbjct: 308 AREVAKERAARLREAGDAALARHLDRQKGKRLRLLTERGGMARAADFTPARTPGVAAGVM 367

Query: 440 LNS 442
           +++
Sbjct: 368 IDA 370


>gi|256081446|ref|XP_002576981.1| radical sam proteins [Schistosoma mansoni]
 gi|238662272|emb|CAZ33218.1| radical sam proteins, putative [Schistosoma mansoni]
          Length = 810

 Score =  271 bits (692), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 121/545 (22%), Positives = 206/545 (37%), Gaps = 104/545 (19%)

Query: 11  AHMVSQIVDQCIVPQRF--FVKSYGCQMNVYDSLRMEDMFFSQGYERV------------ 56
            ++   +     +P++F  FV+++GC  N  DS  M  +    GY               
Sbjct: 30  PNISEDLCLSSNLPEKFHVFVQTWGCAHNTSDSEYMTGLLVKYGYRVTLDGSQITNGCES 89

Query: 57  --------------------------------------NSMDDADLIVLNTCHIREKAAE 78
                                                 ++  +AD+ VLN+C ++  A +
Sbjct: 90  EANISSTSDFACGCQDNGDQCCSKEKNSDKGNVVLSNCDAKKNADVWVLNSCTVKGPAED 149

Query: 79  KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPE 138
              + +     L            VV +GCV Q+       +   V   +G     R+ E
Sbjct: 150 HFRNAVLEGIKL---------GKRVVASGCVPQSRPGADYLKGVSV---IGVHQIDRIVE 197

Query: 139 LLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
           ++E     +    +             +D    R+  +   L I  GC   CT+C     
Sbjct: 198 VVEETL--QESSSSATHSSSSSLAGIALDLPKIRRNPLIEILAISTGCLNACTYCKTKQA 255

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG---------------E 243
           RGI  S  + Q++D A++    GV E+ L  +++ A  G+ LD                 
Sbjct: 256 RGILASYPIEQLLDRAKQAFKEGVKELWLTSEDLGA-YGRDLDRTTSSLICPGLSEKWSH 314

Query: 244 KCTFSDLLYSLSE-IKGLVRLRYTTSHPRDMSDCL--IKAHGDLDVLMPYLHLPVQSGSD 300
             T +DLL  L   I     LR   ++P  + D L  I        +  +LH+PVQSGSD
Sbjct: 315 HITLADLLAGLVPIIPAGCMLRLGMTNPPYILDQLVEIAEVLSHPRVYSFLHIPVQSGSD 374

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVR------PD-----------IAISSDFIVGFPGET 343
            +L +M R +T  E+  ++D +          P            + I++D I GFP ET
Sbjct: 375 AVLDAMKREYTMEEFSSVVDYLMQNVKPPNLPPGAAHDTVNGSGTLTIATDVICGFPTET 434

Query: 344 DDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQV 403
           ++DF  T++L++K  +      ++ PR GTP +NM  + + +    R   L    R    
Sbjct: 435 NNDFNETVELIEKYQFPVLHINQFFPRPGTPAANMSRKANSSEVKSRTRRLHDLFR--SY 492

Query: 404 SFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTL 463
              D  VG  + VLI +   +    VG +   + ++L       G I+ VRI +     +
Sbjct: 493 RTYDGRVGCEVRVLITEPSFDGKFWVGHTKAYEQILLPKDPDVYGRIVLVRIIECDKFFM 552

Query: 464 YGELV 468
            G ++
Sbjct: 553 RGIII 557


>gi|317154020|ref|YP_004122068.1| RNA modification enzyme, MiaB family [Desulfovibrio aespoeensis
           Aspo-2]
 gi|316944271|gb|ADU63322.1| RNA modification enzyme, MiaB family [Desulfovibrio aespoeensis
           Aspo-2]
          Length = 447

 Score =  271 bits (692), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 113/402 (28%), Positives = 187/402 (46%), Gaps = 25/402 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQG--YERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           RF+  + GC++N Y++  + + +   G  +E   +  +ADLI++N+C +   A   +   
Sbjct: 3   RFYTATLGCKINQYETRSIAEAWTGHGQAFE-TGAPQEADLILINSCAVTANAVADLRQT 61

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +  +        +      ++V GC AQ   +E+    P V  VV       L       
Sbjct: 62  VRSLH-------RASPTAGIIVTGCAAQVMADELAG-LPGVVRVVPQADKGALLAGPAAP 113

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
                V+D +      F   SI   GY+R R   A + +Q+GC   CT+C+VP TRG  +
Sbjct: 114 PVSPAVLDGEAGALGGFAPFSIT--GYSRAR---AVVKVQDGCSHHCTYCIVPQTRGPSV 168

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE-----IK 258
           SR +  VV EA +L+D+G  E+ + G N+    G+GL  ++  F DLL  L         
Sbjct: 169 SRPVDAVVAEAVRLLDSGFRELVISGINLR-HYGRGLQ-DRTDFWDLLARLDRELAPRWA 226

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR-HTAYEYRQ 317
           G  RLR ++  P  +    +       ++ P LHL +QSG   +L++M R  +       
Sbjct: 227 GRARLRVSSVEPGQLDHKALDTLAGSSMVCPQLHLSLQSGDPDVLRAMGRGHYDPQGAVD 286

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
            + R+    P I + +D I GFPGE +  F  T+ L   +    A  F YS R GT  + 
Sbjct: 287 FLIRLGEAWPVIGLGADLITGFPGEDEAGFENTLTLCRVLPLTYAHVFPYSERPGTAAAT 346

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQI-IEVLI 418
           M  QV   V+ ER   L+  +  ++ +F +  +G+  ++VL+
Sbjct: 347 MAGQVAVPVRKERATRLRALVSRRKRAFGERLLGRPCLDVLV 388


>gi|224372902|ref|YP_002607274.1| hypothetical protein NAMH_0871 [Nautilia profundicola AmH]
 gi|223589641|gb|ACM93377.1| conserved hypothetical protein [Nautilia profundicola AmH]
          Length = 408

 Score =  271 bits (692), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 107/438 (24%), Positives = 212/438 (48%), Gaps = 40/438 (9%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + F+K++GC+ N+YDS  M+++      E V S ++AD+I++N+C +   A   +  ++ 
Sbjct: 2   KIFIKTFGCRSNLYDSEVMKNILKQN-AEIVYSENEADIIIVNSCTVTNFADRDLRQYIN 60

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           + ++             +++ GC A  +GEE+ ++   V  V+G +    + + +  A  
Sbjct: 61  KWQSKN-----------IMLTGCAAYTQGEELFKQ-GKVKTVLGHKYKETIDKYI--AFQ 106

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G  + D D+  +      +             AF+ IQEGCD  C +C++P  RG   S 
Sbjct: 107 GVELGDFDFINQKIITEYT----------KAKAFVKIQEGCDFECAYCIIPSVRGHSRSL 156

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
             + ++++ + L  NG+ E  L G N+ +  GK  +    T S+L+  +S+I+G+ R+R 
Sbjct: 157 PENIILEQIKTLSQNGISEFVLTGINMGS-YGKDTN---TTLSELIEKISKIRGVKRIRL 212

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
            +  P  + + LI+      +L  +LH+ +Q  SDR+L+ M RR+   +  ++ + +   
Sbjct: 213 GSLEPSQLDERLIE-LTQNGILEKHLHIALQHTSDRMLRIMKRRNRVKQTLELFENL--A 269

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
              IA+ +DFIVG PGET++ ++  +    K        F+++PR GT  + + + V  +
Sbjct: 270 NKGIALGTDFIVGHPGETEEIWQEALKNFKKYPLTHIHIFRFTPRDGTHSATLTQNVKGD 329

Query: 386 VKAERLLCLQKKLREQQVSFN-DACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
           V  +R   L + ++    +F     +   + V       + G   G   +   +++ S  
Sbjct: 330 VAKKRAKILDEIVKRNNYNFRIKNKIPLTVHV----ENYKNGFYEGYDEFYNRMMIKSDK 385

Query: 445 HNIGDIIKV---RITDVK 459
           +  G+ +K+    I DV 
Sbjct: 386 NIKGNWMKINDYEIKDVN 403


>gi|154148690|ref|YP_001406630.1| hypothetical protein CHAB381_1072 [Campylobacter hominis ATCC
           BAA-381]
 gi|153804699|gb|ABS51706.1| conserved hypothetical protein [Campylobacter hominis ATCC BAA-381]
          Length = 414

 Score =  270 bits (691), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 104/421 (24%), Positives = 187/421 (44%), Gaps = 29/421 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + ++K++GC+ N+YDS  +       G E     + AD +++N+C +   A   V +F+ 
Sbjct: 2   KIYIKTFGCRTNIYDSELIMAQIARFGGEICKDENLADFVIINSCTVTNGADSDVRNFIY 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R+               V++ GC A  +G+E   R   +  V G     R+ E L +   
Sbjct: 62  RMNRAGKK---------VIITGCAALNKGKEFFER-GEIFGVFGMSNKNRIAEFLNKGER 111

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
              + + ++                + K    AF+ IQEGCD  C++C++P  RG   S 
Sbjct: 112 FCELGNLNFKENALLN---------DFKSHTKAFIKIQEGCDFNCSYCIIPSVRGKSRSV 162

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
             + +++E +K+I     EI L G N+ +  GK       +  +LL  L +I GL R+R 
Sbjct: 163 DENLIIEEVKKIIAGNHTEIVLTGTNIGS-YGKD---NGSSLGELLQKLGKISGLKRIRL 218

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
            +  P  + +   +   D   L  +LH+ +Q  S ++L  M RR+ A +  ++ + +   
Sbjct: 219 GSIEPSQIDEKF-REILDEPWLEKHLHIALQHTSQKMLTIMRRRNKALKDLKLFNELAER 277

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
               A+ +DFIV  PGETD+ +   +    K       +F +SPR GT  + +  + +  
Sbjct: 278 --GFALGTDFIVAHPGETDEIWSEALTNFKKFPLTHLHAFIFSPRDGTHSAGLKIETNGI 335

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445
              +RL  LQ  +RE  + F  +    +  VL+E+  K      G   +   + + S + 
Sbjct: 336 EAKKRLKTLQSIIRENNLKFRKSHYNNLF-VLVER--KNGEFYEGYDQFYNKIFIKSSHE 392

Query: 446 N 446
            
Sbjct: 393 L 393


>gi|208434645|ref|YP_002266311.1| hypothetical protein HPG27_690 [Helicobacter pylori G27]
 gi|238066301|sp|B5Z796|RIMO_HELPG RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|208432574|gb|ACI27445.1| hypothetical protein HPG27_690 [Helicobacter pylori G27]
          Length = 439

 Score =  270 bits (691), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 94/425 (22%), Positives = 184/425 (43%), Gaps = 24/425 (5%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++  + S GC  N+ DS  M        Y   N +  AD+I++NTC   E A ++    +
Sbjct: 7   KQLCLISLGCSKNLVDSEVMLGKL--YNYTLTNDVKSADVILINTCGFIESAKQESIQTI 64

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
                 K          +++ +GC+++   +EI    P V++  G   Y ++  ++  A+
Sbjct: 65  LNAAKDKKE------GAILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMI--AK 116

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
              +  +  +  E    R+            V A++ I EGC++ C+FC +P  +G   S
Sbjct: 117 KQNQFSEQVFLSEHYNARI-------ITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQS 169

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R L  ++ E   L   G  ++T + Q+ +++      G+K     L+ ++ + + L   R
Sbjct: 170 RELDSILKEVEDLALKGYKDMTFIAQDSSSFLYD--KGQKDGLIQLIRAIDKQQALKSAR 227

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
               +P   +  LI A     +   Y  +P+Q  SD +LK M R  +   + ++++ ++ 
Sbjct: 228 ILYLYPSSTTLELIGAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLNAMKQ 287

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           V+    I S  IVG P E + +F      +D+  + +   F +S    T   ++ E+V +
Sbjct: 288 VKESF-IRSTIIVGHPEENEGEFEELSAFLDEFRFDRLNIFAFSAEENTHAYSL-EKVPK 345

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
                R+  L K   + Q     A + + I+ L+E    ++G+   ++  L+ V      
Sbjct: 346 KTINARIKALNKIALKHQNHSFKALLNKPIKALVEN---KEGEYFYKARDLRWVPEVDGE 402

Query: 445 HNIGD 449
             I D
Sbjct: 403 ILIND 407


>gi|257784598|ref|YP_003179815.1| RNA modification enzyme, MiaB family [Atopobium parvulum DSM 20469]
 gi|257473105|gb|ACV51224.1| RNA modification enzyme, MiaB family [Atopobium parvulum DSM 20469]
          Length = 423

 Score =  270 bits (691), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 117/400 (29%), Positives = 185/400 (46%), Gaps = 23/400 (5%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
             + + GC++N  +   M +     G   V   D+A  IV+NTC +  +A  K    + +
Sbjct: 5   IALINLGCRVNRVELDLMAESLLRMGCHIVE-EDEAQAIVINTCAVTAEAEAKTRKAVRK 63

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
              +  +        LVV  GCVA    EE+   +P V  VV  +       +LE   F 
Sbjct: 64  AALMPGAP-------LVVATGCVASLFAEELASLAPNV--VVEAEKDKVADRVLEELGFA 114

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
              V  D  V  K            R R     + IQ+GCD  CTFC+V   RG   S  
Sbjct: 115 PESVSDDGLVISK-------PTPTGRTRP---GIKIQDGCDNRCTFCIVWKARGAGKSLD 164

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKC-TFSDLLYSLSEIKGLVRLR 264
             +VV + +  +  G  E+ L G N+ +++ +  D GEK     DLL  + E   + RLR
Sbjct: 165 PRKVVSQVKDAMSRGAQEVVLTGINLGSYKVQLEDEGEKIFRLPDLLEYVLEKTEVGRLR 224

Query: 265 YTTSHPRDMSDCLIKAHGDLD-VLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
            ++  P D++  L+K     +  + P+LH+ +QSG D  L  M R +    YR+ ++  R
Sbjct: 225 LSSLEPPDVNARLVKVIAASNGRVAPFLHICLQSGCDATLARMGRVYRTELYRKAVEEAR 284

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           S    IA+ +D IVGFPGETD +F  + +   ++G+++   F+YS R GTP +    QV+
Sbjct: 285 SELSTIALGTDLIVGFPGETDKEFEESYEFCRQMGFSKMHVFRYSKRPGTPAATAPNQVN 344

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK 423
             V AER   ++    + +       +G    V+++  GK
Sbjct: 345 PKVMAERAKKMRDLGNKMRFDAAKKLIGTCDNVVVQYPGK 384


>gi|15611738|ref|NP_223389.1| hypothetical protein jhp0671 [Helicobacter pylori J99]
 gi|81625904|sp|Q9ZLA9|RIMO_HELPJ RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|4155233|gb|AAD06255.1| putative [Helicobacter pylori J99]
          Length = 439

 Score =  270 bits (691), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 95/428 (22%), Positives = 186/428 (43%), Gaps = 30/428 (7%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++  + S GC  N+ DS  M        Y   N    AD+I++NTC   E A ++    +
Sbjct: 7   KQLCLISLGCSKNLVDSEVMLGKL--YNYTLTNDAKKADVILINTCGFIESAKQESIQTI 64

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
                 K          +++ +GC+++   +EI    P V++  G   Y ++  L+  A+
Sbjct: 65  LNAAKDKKE------GAILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDILI--AK 116

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
              +  +  +  E    R+            V A++ I EGC++ C+FC +P  +G   S
Sbjct: 117 KQNQFSEQVFLSEHYNARI-------ITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQS 169

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R L  ++ E   L   G  ++T + Q+ +++      G+K     L+ ++ + + L   R
Sbjct: 170 RELDSILKEVEDLALKGYKDMTFIAQDSSSFLYD--KGQKDGLIQLIRAIDKQQALKSAR 227

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
               +P   +  LI A  D  +   Y  +P+Q  SD +LK M R  +   + ++++ ++ 
Sbjct: 228 ILYLYPSSTTLELIGAIEDSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLNAMKQ 287

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           V+    I S  IVG P E + +F      +D+  + +   F +S    T   ++ E+V +
Sbjct: 288 VKESF-IRSTIIVGHPEENESEFEELSAFLDEFRFDRLNIFAFSAEENTHAYSL-EKVPK 345

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV--GR----SPWLQSV 438
            +   R+  L K   + Q     A + + I+ L+E    ++G+     R    +P +   
Sbjct: 346 KIINARIKALNKIALKHQNHSFKALLNKPIKALVE---HKEGEYFYKARDLRWAPEVDGE 402

Query: 439 VLNSKNHN 446
           +L + +  
Sbjct: 403 ILINDSEL 410


>gi|315638251|ref|ZP_07893433.1| 2-methylthioadenine synthetase [Campylobacter upsaliensis JV21]
 gi|315481787|gb|EFU72409.1| 2-methylthioadenine synthetase [Campylobacter upsaliensis JV21]
          Length = 413

 Score =  270 bits (691), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 102/425 (24%), Positives = 207/425 (48%), Gaps = 34/425 (8%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           +P + F+K++GC+ N+YDS  ++       +E  N+  +AD++++N+C +   A   + +
Sbjct: 1   MP-KIFLKTFGCRTNIYDSELIKGYIKD--FELTNNEKEADIVLINSCTVTNGADSGLKT 57

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
           ++  ++           ++ V++ GC A ++G+E+L     +  V+G     ++ E L+ 
Sbjct: 58  YINSLKK---------NNIKVILTGCAAVSKGKELLDN-GAIFGVLGASNKAKINEFLKE 107

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            +    + + ++  +D  +           +    AF+ IQEGCD  C++C++P  RG  
Sbjct: 108 KKRFYELGNLNFIDKDIVKDY---------ENHTKAFVKIQEGCDFNCSYCIIPSVRGRS 158

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            S   S ++++ + LI NG  EI L G N+ ++  K       T   LL  + +I GL R
Sbjct: 159 RSVKESDLLEQIKILIQNGYTEIVLTGTNIGSYGLKD----GTTLGKLLQKMMQISGLKR 214

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R  +  P  + +  ++   D  +L  +LH+ +Q  S+ +L+ M RR    +  ++   +
Sbjct: 215 IRLGSLEPAQIDESFME-ILDEKLLERHLHIALQHTSETMLRIMRRRSHTKDDLRLFQTL 273

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
            S     A+ +DFIVG PGE+++ ++  +    +       +F +SPR  T  + +   +
Sbjct: 274 ASK--GFALGTDFIVGHPGESEELWQEALRNFTEFKLTHLHAFIFSPRNNTHSATLKNTI 331

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQI-IEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
             ++  ERL  L+  +++    F  A   +I +EVLIE   ++ G   G   +   + + 
Sbjct: 332 KGDLAKERLNTLKAIVQKNNFEFRKA--NKIKLEVLIE--SEKNGFYEGYDQFFNKIKIK 387

Query: 442 SKNHN 446
           S+   
Sbjct: 388 SEKEL 392


>gi|57242028|ref|ZP_00369968.1| MiaB-like tRNA modifying enzyme [Campylobacter upsaliensis RM3195]
 gi|57017220|gb|EAL54001.1| MiaB-like tRNA modifying enzyme [Campylobacter upsaliensis RM3195]
          Length = 413

 Score =  270 bits (691), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 101/425 (23%), Positives = 207/425 (48%), Gaps = 34/425 (8%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           +P + F+K++GC+ N+YDS  ++       +E  N+  +AD++++N+C +   A   + +
Sbjct: 1   MP-KIFLKTFGCRTNIYDSELIKGYIKD--FELTNNEKEADIVLINSCTVTNGADSGLKT 57

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
           ++  ++           ++ V++ GC A ++G+E+L     +  V+G     ++ E L+ 
Sbjct: 58  YINSLKK---------NNIKVILTGCAAVSKGKELLDN-GAIFGVLGASNKAKINEFLKE 107

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            +    + + ++  +D  +           +    AF+ IQEGCD  C++C++P  RG  
Sbjct: 108 KKRFYELGNLNFIDKDIVKDY---------ENHTKAFVKIQEGCDFNCSYCIIPSVRGRS 158

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            S   S ++++ + LI NG  EI L G N+ ++  K       T   LL  + +I GL R
Sbjct: 159 RSVKESDLLEQIKILIQNGYTEIVLTGTNIGSYGLKD----GTTLGKLLQKMMQISGLKR 214

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R  +  P  + +  ++   D  +L  +LH+ +Q  S+ +L+ M RR    +  ++   +
Sbjct: 215 IRLGSLEPAQIDESFME-ILDEKLLERHLHIALQHTSETMLRIMRRRSHTKDDLRLFQTL 273

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
            S     A+ +DFIVG PGE+++ ++  +    +       +F +SPR  T  + +   +
Sbjct: 274 ASK--GFALGTDFIVGHPGESEELWQEALRNFTEFKLTHLHAFIFSPRNNTHSATLKNTI 331

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQI-IEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
             ++  ERL  L+  +++    F  A   ++ +EVLIE   ++ G   G   +   + + 
Sbjct: 332 KGDLAKERLNTLKAIVQKNNFEFRKA--NKVKLEVLIE--SEKNGFYEGYDQFFNKIKIK 387

Query: 442 SKNHN 446
           S+   
Sbjct: 388 SEKEL 392


>gi|58617513|ref|YP_196712.1| hypothetical protein ERGA_CDS_07860 [Ehrlichia ruminantium str.
           Gardel]
 gi|58417125|emb|CAI28238.1| Conserved hypothetical protein [Ehrlichia ruminantium str. Gardel]
          Length = 405

 Score =  270 bits (690), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 100/358 (27%), Positives = 167/358 (46%), Gaps = 26/358 (7%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V ++GC++N Y+S  +++             +  D+IV++TC +  +A  +V + + ++ 
Sbjct: 4   VITFGCRLNFYESEVIKNNLKKA--------ELDDVIVVHTCAVTSEAERQVKAKIRKLY 55

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
           N          ++ ++VAGC AQ    E     P V  V+G +   +    +        
Sbjct: 56  N-------NNANVKIIVAGCAAQLNP-ESYMSMPGVVKVLGNEDKLKYESYI-------- 99

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
             D          R  I D          A + IQ GC+  CTFCV+   RG   S  + 
Sbjct: 100 TADKVIVGNIGNSRTVIKDSIKQFPGKSRALIEIQNGCNHECTFCVITKARGNNRSLHIE 159

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
            ++ + +  ++NG  E+   G ++ +  G  + G++     +   L  I  L RLR ++ 
Sbjct: 160 DIITQVKDCVNNGYNEVVFTGVDI-SDFGIDIYGQRMLGVMIKRVLGAIPQLRRLRLSSI 218

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
              ++ D LI   G+    MP+LHL +QSG++ ILK M RRH   +  +  +R+  +R D
Sbjct: 219 DVAEIEDDLIDIIGNEPRFMPHLHLSLQSGNNLILKRMKRRHNREQVVEFCNRVSGMRKD 278

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           I   +D IVGFP ET+D F  T+ L+++   +    F YS R GTP + M  QV   V
Sbjct: 279 IVFGADIIVGFPTETEDMFNDTVKLIEEANISYLHIFPYSAREGTPAARMP-QVSPEV 335


>gi|308182893|ref|YP_003927020.1| 2-methylthioadenine synthetase [Helicobacter pylori PeCan4]
 gi|308065078|gb|ADO06970.1| 2-methylthioadenine synthetase [Helicobacter pylori PeCan4]
          Length = 439

 Score =  269 bits (689), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 97/428 (22%), Positives = 186/428 (43%), Gaps = 30/428 (7%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++  + S GC  N+ DS  M        Y   N    AD+I++NTC   E A ++    +
Sbjct: 7   KQLCLISLGCSKNLVDSEVMLGKL--YNYTLTNDTKSADVILINTCGFIESAKQESIQTI 64

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
                 K          +++ +GC+++   +EI    P V++  G   Y ++  L+  A+
Sbjct: 65  LNAAKDKKK------GAILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDILI--AK 116

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
              +  +  +  E    R+            V A++ I EGC++ C+FC +P  +G   S
Sbjct: 117 KQNQFSEQVFLSEHYNARI-------ITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQS 169

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R L  ++ E   L   G  ++T + Q+ +++      G+K     L+ ++ + + L   R
Sbjct: 170 RELDSILKEVENLALKGYKDMTFIAQDSSSFLYD--KGQKDGLIQLIRAIDKQQALKSAR 227

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
               +P   +  LI A  D  V   Y  +P+Q  SD +LK M R  +   + +++D ++ 
Sbjct: 228 ILYLYPSSTTLELIGAIEDSPVFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQ 287

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           V+    I S  IVG P E + +F      +D+  + +   F +S    T   ++ E+V +
Sbjct: 288 VKESF-IRSTIIVGHPEENEGEFEELSMFLDEFQFDRLNIFAFSAEENTHAYSL-EKVPK 345

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV--GR----SPWLQSV 438
            +   R+  L K   + Q     A + + I+ L+E    ++G+     R    +P +   
Sbjct: 346 KIINARIKALNKIALKHQNHSFKALLNKPIKALVE---HKEGEYFYKARDLRWAPEVDGE 402

Query: 439 VLNSKNHN 446
           +L + +  
Sbjct: 403 ILINDSAL 410


>gi|148555837|ref|YP_001263419.1| MiaB-like tRNA modifying enzyme [Sphingomonas wittichii RW1]
 gi|148501027|gb|ABQ69281.1| MiaB-like tRNA modifying enzyme [Sphingomonas wittichii RW1]
          Length = 419

 Score =  269 bits (689), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 115/439 (26%), Positives = 188/439 (42%), Gaps = 30/439 (6%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           + + GC++N+ +S             R    D  DL+++N+C +  +A ++    + +  
Sbjct: 6   LITLGCRLNIAESEA----------MRAAMADADDLVIVNSCAVTAEAVKQARKAIRQAA 55

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
                  K   +  +VV GC AQ +         +  V+             +R      
Sbjct: 56  -------KRRPEARIVVTGCAAQTDPAAFAAMPEVARVIGNADKGRADLFAFDRGARADV 108

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
            V    +V D    ++     +       AF+ +Q GCD  CTFCV+PY RG   S    
Sbjct: 109 HVSDVMAVRDTAPHMAAAFAAHA-----RAFVEVQNGCDHRCTFCVIPYGRGNSRSVPAG 163

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
            V+D  + L+D+G  E+ L G ++ +  G  L G       +   L+ + GL RLR ++ 
Sbjct: 164 IVIDRIKALVDDGHAEVVLTGVDLTS-YGPDLPGAPTLGQLVERILTHVPGLRRLRLSSL 222

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
              ++ D L         +MP++HL +Q+G D ILK M RRH+  +   +++R+R+ RP+
Sbjct: 223 DSIEIDDRLFALLTQEARMMPHVHLSLQAGDDLILKRMKRRHSRAQAVAMVERLRAARPE 282

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           IAI +D I GFP E +     +  L+D         F +SPR GTP + M  Q+D     
Sbjct: 283 IAIGADLIAGFPTEDETMAANSAALIDDCDIVFGHVFPFSPRAGTPAARMP-QLDRATIR 341

Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIG 448
            R   L+ +   ++  +    VG    VL E+ G       G +P    V         G
Sbjct: 342 RRAADLRARAEARRARWLGTLVGTRQAVLAERGGG------GHAPNFARVRFEGTAPAPG 395

Query: 449 DIIKVRITDVKISTLYGEL 467
            I  + IT V    L G +
Sbjct: 396 AIANIIITGVDDGALTGRV 414


>gi|322434670|ref|YP_004216882.1| MiaB-like tRNA modifying enzyme YliG [Acidobacterium sp. MP5ACTX9]
 gi|321162397|gb|ADW68102.1| MiaB-like tRNA modifying enzyme YliG [Acidobacterium sp. MP5ACTX9]
          Length = 581

 Score =  269 bits (688), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 88/309 (28%), Positives = 142/309 (45%), Gaps = 14/309 (4%)

Query: 172 RKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQN 231
                +A++ I EGCD  C+FC++P  RG   SR +  ++ EA+ LI  GV EITL+GQ+
Sbjct: 274 TTPRASAYIKIAEGCDHPCSFCIIPQLRGKFRSRRMGSIIAEAQNLIAQGVREITLIGQD 333

Query: 232 VNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL 291
                G+ L G K   + LL  L+ + GL  LR+  ++P  ++  L++     D +  YL
Sbjct: 334 TT-CYGEDL-GLKEGLAQLLDGLAVLPGLRWLRFLYTYPNKVTTRLLETMARHDTISKYL 391

Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351
            +P+Q  S  +LK+M R   A  +  +I + R + P I I + FIVGFPGET+ D++   
Sbjct: 392 DVPLQHASPNVLKTMKRGGNAQIFLNLIAKARQIVPGIVIRTSFIVGFPGETEADYKLLE 451

Query: 352 DLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ--VDENVKAERLLCLQKKLREQQVSFNDAC 409
           D V          F YS   G     + +   V       R   L K  ++   +     
Sbjct: 452 DFVKAARIDWLGVFTYSDEEGAKAFELPDDTKVPNRTIQARRRKLMKLQQKISTTEKLKW 511

Query: 410 VGQIIEVLIEKHGKEKG-KLVGRS----PWLQSVVL-----NSKNHNIGDIIKVRITDVK 459
           VG+ I++L+E   +E      GR+    P +   V        +    G   +  IT+  
Sbjct: 512 VGREIDLLVEGPSEETDLLWEGRTSLHAPEIDGKVFINDFGPHEELVPGTFYRAEITESH 571

Query: 460 ISTLYGELV 468
              +   ++
Sbjct: 572 DYDVVARIL 580



 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 38/175 (21%), Positives = 71/175 (40%), Gaps = 9/175 (5%)

Query: 13  MVSQIVDQCIV---PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNT 69
           M S ++D  I      +    S GC  N+ DS  M  +    G E     +DA++IV+NT
Sbjct: 1   MPSAVLDPAISAPSKPKVGFVSLGCPKNLVDSEVMMGLLHHNGAELTPRAEDAEIIVINT 60

Query: 70  CHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG 129
           C   + A ++  + +  +   K      G    ++VAGC+ +   +EI +  P V+ VVG
Sbjct: 61  CSFIDSAKQESVNTILEMVQHKQKN--GGKAQRIIVAGCLVERYRDEIQKNIPEVDAVVG 118

Query: 130 PQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQE 184
                   E +  A       ++ +++  +      ++      R +     + E
Sbjct: 119 TGE----LEAILAAAGLTPTSNSPFNILPQDFNQPSIESHTQTDRALLEGNLVNE 169


>gi|297620170|ref|YP_003708275.1| MiaB-like tRNA modifying protein [Methanococcus voltae A3]
 gi|297379147|gb|ADI37302.1| MiaB-like tRNA modifying enzyme [Methanococcus voltae A3]
          Length = 496

 Score =  269 bits (688), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 122/514 (23%), Positives = 224/514 (43%), Gaps = 71/514 (13%)

Query: 2   GLFIKLIGVAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVN---- 57
           G  +KL       +   D+ I  Q+  ++ YGC +N  D+  +++    +G+        
Sbjct: 4   GANMKLNNENTQNTNNNDKII--QKVHLEGYGCTLNTSDTEIIKNSLIEKGFNVFTGNFN 61

Query: 58  --SMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGE 115
               ++ +L+V+NTC +R++   K+   + +I+  K S  K      V+VAGC+A+A  +
Sbjct: 62  DLKDENINLVVINTCIVRQETEHKM---ISKIKKYKESNKK------VIVAGCLAKALSK 112

Query: 116 EILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTD-----YSVEDKFERLSIVDGGY 170
           ++       + ++ P+  +   E+++    G +  + +     +  E +   +S +D   
Sbjct: 113 KVEGLY---DALIMPREAHLSGEIVKAVVEGYKPEEINNKIDLFKKEVENSEISKIDNKL 169

Query: 171 N-----------------------RKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
           N                           +   L I EGC   CT+C+V   RG  IS   
Sbjct: 170 NYLLKNNCTENNNNNNNKIVNNTNNNTNLVMALPICEGCLGNCTYCIVKVARGNLISYEP 229

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG----LVRL 263
             ++ ++ +LI +G   + +  Q+  A  G     +K    +L+  + +          +
Sbjct: 230 KNIIKKSEELIKSGTKCLLITAQDT-ACYGFDR-RDKYRLPNLINDIVDNPNSKPFDFGI 287

Query: 264 RYTTSHPRD---MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
           R    H        D LI+++   + ++ +LHLP+QSG D +LK MNR +T  E+  ++ 
Sbjct: 288 RIGMMHANYANSFIDELIESY-SSEKVIKFLHLPIQSGDDNVLKDMNRGYTVDEFISVLG 346

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
             +    D+  ++D IVGFP E+++ F  T++++ KI        KYS R  T    M +
Sbjct: 347 EFKRKVKDLNFTTDVIVGFPTESEEAFENTLEVMKKIKPDFTHGAKYSQRKYTLAGRM-K 405

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV- 439
           Q+D  ++ ER   L K  RE     N   VGQ  E LI K G+        +   + V+ 
Sbjct: 406 QIDTKIRKERSEILNKLRREISFENNKRHVGQTFECLITKKGEAI------TSNCKKVLF 459

Query: 440 -----LNSKNHNIGDIIKVRITDVKISTLYGELV 468
                 N  N  +G+   ++IT+     L G L+
Sbjct: 460 NRFDEFNEFNAPVGEFKTLKITEAGTFGLKGRLI 493


>gi|297379931|gb|ADI34818.1| MiaB-like tRNA modifying enzyme YliG [Helicobacter pylori v225d]
          Length = 439

 Score =  269 bits (688), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 95/427 (22%), Positives = 184/427 (43%), Gaps = 28/427 (6%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++  + S GC  N+ DS  M        Y   N    AD+I++NTC   E A ++    +
Sbjct: 7   KQLCLISLGCSKNLVDSEVMLGKL--YNYTLTNDTKSADVILINTCGFIESAKQESIQTI 64

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
                 K          +++ +GC+++   +EI    P V++  G   Y ++  ++  A+
Sbjct: 65  LNAAKDKKK------GAILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMI--AK 116

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
              +  +  +  E    R+            V A++ I EGC++ C+FC +P  +G   S
Sbjct: 117 KQNQFSEQVFLSEHYNARI-------ITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQS 169

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R L  ++ E   L   G  ++T + Q+ +++      G+K     L+ ++ + + L   R
Sbjct: 170 RELDSILKEVEDLALKGYTDMTFIAQDSSSFLYD--KGQKDGLIQLIRAIDKQQALKSAR 227

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
               +P   +  LI A     +   Y  +P+Q  SD +LK M R  +   + +++D ++ 
Sbjct: 228 ILYLYPSSTTLELIGAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQ 287

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           V+    I S  IVG P E + +F      +D+  + +   F +S    T   ++ E+V +
Sbjct: 288 VKESF-IRSTIIVGHPEENEGEFEELSAFLDEFRFDRLNIFAFSAEENTHAYSL-EKVPK 345

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GR----SPWLQSVV 439
            +   R+  L K   + Q +   A + + I+ L+E   KE       R    +P +   +
Sbjct: 346 KIINARIKALNKIALKHQNNSFKALLNKPIKALVE--NKESEYFYKARDLRWAPEVDGEI 403

Query: 440 LNSKNHN 446
           L + +  
Sbjct: 404 LINDSEL 410


>gi|90083062|dbj|BAE90613.1| unnamed protein product [Macaca fascicularis]
          Length = 464

 Score =  269 bits (687), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 98/384 (25%), Positives = 177/384 (46%), Gaps = 10/384 (2%)

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
             RN      +E     +V+AGCV QA+  +   +      ++G Q   R+ E++E    
Sbjct: 6   HFRNSIKKAQEENK--KIVLAGCVPQAQPRQDYLKG---LSIIGVQQIDRVVEVVEETIK 60

Query: 146 GKRVVDTDYSVED-KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
           G  V       ++ +    + +D    RK  +   ++I  GC   CT+C   + RG   S
Sbjct: 61  GHSVRLLGQKKDNGRRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLAS 120

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
             + ++VD A++    GVCEI L  ++  A  G+ +     T    L  +     ++RL 
Sbjct: 121 YPIDELVDRAKQSFQEGVCEIWLTSEDTGA-YGRDIGTNLPTLLWKLVEVIPEGAMLRLG 179

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
            T           +    +   +  +LH+PVQ  SD +L  M R +   ++++++D ++ 
Sbjct: 180 MTNPPYILEHLEEMAKILNHPRVYAFLHIPVQPASDSVLMEMKREYCVADFKRVVDFLKE 239

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             P I I++D I GFPGETD DF+ T+ LV++  +   F  ++ PR GTP + M EQV  
Sbjct: 240 KVPGITIATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKM-EQVPA 298

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
            VK +R   L +       S  +  +G+  +VL+ +   +    V  + + + V++    
Sbjct: 299 QVKKQRTKDLSRVF--HSYSPYNHKIGERQQVLVTEESFDSKFYVAHNRFYEQVLVPKNP 356

Query: 445 HNIGDIIKVRITDVKISTLYGELV 468
             +G +++V I +     + G+ V
Sbjct: 357 AFMGKMVEVDICESGKHFMKGQPV 380


>gi|332673464|gb|AEE70281.1| possible 2-methylthioadenine synthetase [Helicobacter pylori 83]
          Length = 451

 Score =  269 bits (687), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 95/427 (22%), Positives = 185/427 (43%), Gaps = 28/427 (6%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++  + S GC  N+ DS  M        Y   N    AD+I++NTC   E A ++    +
Sbjct: 7   KQLCLISLGCSKNLVDSEVMLGKL--YNYTLTNDAKSADVILINTCGFIESAKQESIQTI 64

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
                 K          +++ +GC+++   +EI    P V++  G   Y ++  ++  A+
Sbjct: 65  LNAAKDKKK------GAILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMI--AK 116

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
              +  +  +  E    R+            V A++ I EGC++ C+FC +P  +G   S
Sbjct: 117 KQNQFSEQVFLSEHYNARI-------ITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQS 169

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R L  ++ E   L   G  ++T + Q+ +++      G+K     L+ ++ + + L   R
Sbjct: 170 RELDSILKEVEDLALKGYTDMTFIAQDSSSFLYD--KGQKDGLIQLISAIDKQQALKSAR 227

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
               +P   +  LI A     +   Y  +P+Q  SD +LK M R  +   + +++D ++ 
Sbjct: 228 ILYLYPSSTTLELIGAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQ 287

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           V+ +  I S  IVG P E + +F      +D+  + +   F +S    T   ++ E+V +
Sbjct: 288 VK-ECFIRSTIIVGHPEENEGEFEELSAFLDEFRFDRLNIFAFSAEENTHAYSL-EKVPK 345

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GR----SPWLQSVV 439
            +   R+  L K   + Q +   A + + I+ L+E   KE       R    +P +   +
Sbjct: 346 KIINARIKALNKIALKHQNNSFKALLNKPIKALVE--NKEGEYFYKARDLRWAPEVDGEI 403

Query: 440 LNSKNHN 446
           L + +  
Sbjct: 404 LINDSEL 410


>gi|189485228|ref|YP_001956169.1| hypothetical protein TGRD_225 [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
 gi|170287187|dbj|BAG13708.1| conserved hypothetical protein [uncultured Termite group 1
           bacterium phylotype Rs-D17]
          Length = 405

 Score =  269 bits (687), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 111/451 (24%), Positives = 205/451 (45%), Gaps = 63/451 (13%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +++++ ++GC++N Y+S  + + F    +E     ++AD+I+ N+C +   A +K+  FL
Sbjct: 2   KKYYIHTFGCKVNQYESQLISEKFRKDNFECTQKPEEADIIIFNSCTVTADADKKLEYFL 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R   L N          +++ GC+ + +  +I    P + ++                 
Sbjct: 62  RRATKLPNRPK-------IMLTGCIVKNKNIDIKNLFPDIEIIT---------------D 99

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
             K  ++        F+R S             AFL IQ+GC  FC++C+VPY R    S
Sbjct: 100 KTKLFIEPQKQKVSGFDRHS------------RAFLKIQDGCKSFCSYCIVPYVRSTLWS 147

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           +  ++V+ E + L+ +G  EI L G +   + G          SDLL  + +I    R+R
Sbjct: 148 KPENEVLSEIKNLVKSGYSEIVLTGIHTGKYDG--------GLSDLLEKIIKIPLAFRVR 199

Query: 265 YTTSHPRDMSDCLIKAHG-DLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
            ++    ++ D  I+    + + +  +LH+P+QSGSD ILK MNR ++  E+ + + +I 
Sbjct: 200 ISSVELSEIDDKFIELIETNTEKICRHLHVPLQSGSDEILKQMNRNYSTKEFEKKVSKIM 259

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
            + PD+A+++D I GFPGET+   + T D V +I +A+   F+YS R  T  S    +V 
Sbjct: 260 RILPDLALTTDIITGFPGETEKHHKETCDFVKQILFARFHIFRYSYRQETKASTFGNKVP 319

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
            +    R   + +    ++  F +  +G   + +     K        +    +V   ++
Sbjct: 320 TSEIKNRAKDIFEIDSIKRKDFLNKNIGTKRKAVKTGKNKLL------TDNYITVKRQTE 373

Query: 444 NHNI--GD------------IIKVRITDVKI 460
             N+  G             I +V ITD   
Sbjct: 374 AWNVECGTMKASGNKKKQSGIFEVEITDTSE 404


>gi|157164712|ref|YP_001466755.1| hypothetical protein CCC13826_0085 [Campylobacter concisus 13826]
 gi|157101465|gb|EAT97324.2| conserved hypothetical protein [Campylobacter concisus 13826]
          Length = 412

 Score =  268 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 107/443 (24%), Positives = 208/443 (46%), Gaps = 32/443 (7%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           Q+ F K++GC+ N+YD+  ++       YE  N  + AD++V+N+C +   A   V +++
Sbjct: 2   QKIFFKTFGCRTNIYDTELLKSYIKD--YEITNDEEVADIVVINSCTVTNSADSGVRNYI 59

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             ++              V++ GC A ++G E+   +  +  V+G      L ELL++ +
Sbjct: 60  NGVKR---------RGAKVILTGCGAVSKGRELF--ASGIYGVLGASKKSDLNELLKQEK 108

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
               + + +   ++              +    AF+ IQEGC+  C++C++P  RG   S
Sbjct: 109 PFFELGNLNSVDKNIVTNY---------ENHTKAFIKIQEGCNFNCSYCIIPSVRGKARS 159

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
              + ++ EAR L  NG  E+ L G N+ +  GK  +    +   LL +L +I G+ R+R
Sbjct: 160 MDEAMILKEARILAQNGYNELVLTGTNIGS-YGKDTN---SSLGKLLANLGKISGIRRIR 215

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
             +  P  + +   +     + L  +LH+ +Q  S  +LK M RR+ A+   ++ + + S
Sbjct: 216 LGSIEPSQIDESF-REILKEEWLERHLHIALQHTSQAMLKIMRRRNNAFSDLELFNELSS 274

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           +    A+ +D+IVG PGE+++ +   ++   K       +F YSPR  T  + +   V  
Sbjct: 275 L--GFALGTDYIVGHPGESEEIWAEAVENFKKFPITHLHAFVYSPRRDTHSATLKSDVSG 332

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
           +V   RL  LQ    +   +F     G  +++L+E+  K      G   +     ++S+N
Sbjct: 333 DVAKSRLKILQGIALQNNENFRKKHNG-TLKILVEQ--KNGDFYEGFDQFYNKAKISSQN 389

Query: 445 HNIGDIIKVRITDVKISTLYGEL 467
               + ++V   ++K    Y ++
Sbjct: 390 DITKEWLEVSEYEIKPDANYAKI 412


>gi|157164518|ref|YP_001467029.1| hypothetical protein CCC13826_0582 [Campylobacter concisus 13826]
 gi|238065314|sp|A7ZE21|RIMO_CAMC1 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|112800040|gb|EAT97384.1| conserved hypothetical protein [Campylobacter concisus 13826]
          Length = 436

 Score =  268 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 100/455 (21%), Positives = 201/455 (44%), Gaps = 32/455 (7%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           +P +  + S GC  N+ DS  M     +  Y+  + + DAD+I++NTC   + A E+   
Sbjct: 1   MP-KLHLISLGCNKNLVDSEIMLGRLQN--YDITDDISDADVIIVNTCGFIKSAKEESIQ 57

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +  +   +          L+VV GC+ Q   +E+++  P V++  G   Y ++ E++ +
Sbjct: 58  TILEMHEARK------NGSLLVVTGCLMQRYKDELIKELPEVDLFTGVADYDKIDEIILK 111

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            +         +S E     L   +          A++ I EGC++ C+FC +P  +G  
Sbjct: 112 KQN-------LFSPE---TYLQANEERVITGSNYHAYIKISEGCNQKCSFCAIPTFKGKL 161

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SRSL  + +E + L+  G  + + L Q+ +++      G      +L+  + +I G+  
Sbjct: 162 KSRSLENITNEVKNLVKKGYYDFSFLSQDSSSYMRD--QGINDGLINLIDEIEKINGVRS 219

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
            R    +P   S  LI       +   Y  +P+Q  S+ +LK M R   A + +++++ +
Sbjct: 220 ARILYLYPSTTSKELISRIIASPIFHNYFDMPIQHISENMLKIMKRGSGAKKIKELLNLM 279

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+ + +  + +  IVG PGE+++DF    + +++  + +  +F YS    T    M EQ+
Sbjct: 280 RNAQ-NSFLRTGVIVGHPGESEEDFEELCEFLEEFKFDRISAFAYSKEEDTASFEM-EQI 337

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG-----RSPWLQS 437
              + ++RL  ++K  ++         +G+ I   +E    E               +  
Sbjct: 338 PAKIISKRLSKIEKITKKAINESLQKELGKQIYASLEGISSEGEMFYAAKKDIWDKDIDG 397

Query: 438 VVL----NSKNHNIGDIIKVRITDVKISTLYGELV 468
            +L    + K   IG +    ++DV    L   ++
Sbjct: 398 EILINESDVKELEIGSLYLCEVSDVVDQKLVATII 432


>gi|217033775|ref|ZP_03439201.1| hypothetical protein HP9810_7g56 [Helicobacter pylori 98-10]
 gi|216943824|gb|EEC23264.1| hypothetical protein HP9810_7g56 [Helicobacter pylori 98-10]
          Length = 439

 Score =  268 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 95/427 (22%), Positives = 184/427 (43%), Gaps = 28/427 (6%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++  + S GC  N+ DS  M        Y   N    AD+I++NTC   E A ++    +
Sbjct: 7   KQLCLISLGCSKNLVDSEVMLGKL--YNYTFTNDTKSADVILINTCGFIESAKQESIQTI 64

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
                 K          +++ +GC+++   +EI    P V++  G   Y ++  ++  A+
Sbjct: 65  LNAAKDKK------RGAILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMI--AK 116

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
              +  +  +  E    R+            V A++ I EGC++ C+FC +P  +G   S
Sbjct: 117 KQNQFSEQVFLSEHYNARI-------ITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQS 169

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R L  ++ E   L   G  ++T + Q+ +++      G+K     L+ ++ + + L   R
Sbjct: 170 RELDSILKEVENLALKGYRDMTFIAQDSSSFLYD--KGQKDGLIQLIKAIDKQQALKSAR 227

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
               +P   +  LI A     +   Y  +P+Q  SD +LK M R  +   + +++D ++ 
Sbjct: 228 ILYLYPSSTTLELIGAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQ 287

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           V+    I S  IVG P E + +F      +D+  + +   F +S    T   ++ E+V +
Sbjct: 288 VKESF-IRSTIIVGHPEENEGEFEELSAFLDEFRFDRLNIFAFSAEENTHAYSL-EKVPK 345

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GR----SPWLQSVV 439
            +   R+  L K   + Q +   A + + I+ L+E   KE       R    +P +   +
Sbjct: 346 KIINARIKALNKIALKHQNNSFKALLNKPIKALVE--NKEGEYFYKARDLRWAPEVDGEI 403

Query: 440 LNSKNHN 446
           L + +  
Sbjct: 404 LINDSEL 410


>gi|298528465|ref|ZP_07015869.1| RNA modification enzyme, MiaB family [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298512117|gb|EFI36019.1| RNA modification enzyme, MiaB family [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 429

 Score =  268 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 109/445 (24%), Positives = 196/445 (44%), Gaps = 43/445 (9%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           FF+ + GC++N Y+S  + +    QG    +  + A  I +N+C +  +A + +   L R
Sbjct: 6   FFMTTLGCRVNQYESQAISEALQRQGLVPADGPEQAGYIYVNSCAVTARAVKDLKKTLRR 65

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           +R        +     ++V GC AQ   EE+      V++VV                  
Sbjct: 66  LR-------VQAPQARIIVTGCAAQIFEEEL-GALEEVDLVV---------------PQS 102

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           ++         D       +D            + +Q+GC + C++C+VP +RG  +SR 
Sbjct: 103 RKTSILASPFPDPHAGDPGLDYWITSYFRARPVVKVQDGCSRGCSYCIVPASRGAPVSRP 162

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-----SEIKGLV 261
              V+ E + L++ G  EI + G N+    G  LD  +  F DL+  L     SE +  +
Sbjct: 163 PEVVLREIQGLLNRGYREIVISGINLGM-YGVDLD-AREDFWDLICYLEKNLASEWEDRM 220

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR-RHTAYEYRQIID 320
           RLR ++  P  +    I       ++ P+ HL +QSG   +L  M R  +   +    ++
Sbjct: 221 RLRLSSLDPAMLDSRGIDIISSSVLICPHFHLSLQSGCTWVLTRMGRDHYHPAKAIFFVE 280

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           R+    P  ++ +DF+VGFPGE  D F  T+ L + +  +    F YSPR GT  +   +
Sbjct: 281 RLERTIPFYSMGADFLVGFPGEKPDYFERTLKLTEALPLSYGHVFTYSPRPGTRAARWPD 340

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQ-IIEVLIEKHGKEKGKLVGRSPWLQSVV 439
           Q+ ++VK +R   L++ L+ ++  F    + +  + +++E   K      G S +     
Sbjct: 341 QIAQHVKEKRARELKEVLKHKRQRFTSKLLREDKLRLIMETPYK------GMSEYYMDCF 394

Query: 440 LNSKN--HNIGDIIKV---RITDVK 459
           +  +N     GD +     +I D K
Sbjct: 395 IEDQNLGLKPGDTVSAAPYKIQDSK 419


>gi|108563143|ref|YP_627459.1| hypothetical protein HPAG1_0718 [Helicobacter pylori HPAG1]
 gi|122386488|sp|Q1CTD7|RIMO_HELPH RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|107836916|gb|ABF84785.1| hypothetical protein HPAG1_0718 [Helicobacter pylori HPAG1]
          Length = 439

 Score =  268 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 95/428 (22%), Positives = 184/428 (42%), Gaps = 30/428 (7%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++  + S GC  N+ DS  M        Y   N    AD+I++NTC   E A ++    +
Sbjct: 7   KQLCLISLGCSKNLVDSEVMLGKL--YNYTLTNDAKSADVILINTCGFIESAKQESIQTI 64

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
                 K          +++ +GC+++   +EI    P V++  G   Y ++  L+  A+
Sbjct: 65  LNAAKDKKE------GAILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDILI--AK 116

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
              +  +  +  E    R+            V A++ I EGC++ C+FC +P  +G   S
Sbjct: 117 KQNQFSEQVFLSEHYNARI-------ITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQS 169

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R L  ++ E   L   G  ++T + Q+ +++      G+K     L+ ++ + + L   R
Sbjct: 170 RELDSILKEVENLALKGYKDMTFIAQDSSSFLYD--KGQKDGLIQLIKAIDKQQALKSAR 227

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
               +P   +  LI A     +   Y  +P+Q  SD +LK M R  +   + +++D ++ 
Sbjct: 228 ILYLYPSSTTLELIGAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQ 287

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           V+    I S  IVG P E + +F      +D+  + +   F +S    T   ++ E+V +
Sbjct: 288 VKESF-IRSTIIVGHPEENEGEFEELSAFLDEFRFDRLNIFAFSAEENTHAYSL-EKVPK 345

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV--GR----SPWLQSV 438
                R+  L K   + Q     A + + I+ L+E    ++G+     R    +P +   
Sbjct: 346 KTINARIKALNKIALKHQNHSFKALLNKPIKALVE---HKEGEYFYKARDLRWAPEVDGE 402

Query: 439 VLNSKNHN 446
           +L + +  
Sbjct: 403 ILINDSEL 410


>gi|289596431|ref|YP_003483127.1| MiaB-like tRNA modifying enzyme [Aciduliprofundum boonei T469]
 gi|289534218|gb|ADD08565.1| MiaB-like tRNA modifying enzyme [Aciduliprofundum boonei T469]
          Length = 404

 Score =  268 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 118/447 (26%), Positives = 202/447 (45%), Gaps = 52/447 (11%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + ++++YGC  N+ ++    +M      E V+  ++AD+I++ TC + E    ++   + 
Sbjct: 2   KVYLEAYGCSQNIAET----NMLGQAMGEIVSRPEEADVILIGTCVVIEHTENRMLRRIE 57

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVV-VGPQTYYRLPELLERAR 144
            ++              +VV GC+  A  E +      ++VV +    +    E+L    
Sbjct: 58  ELKRYGKK---------IVVYGCLPSARKELL-----DIDVVPIATWEFEMAGEIL---- 99

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
                 + D S  D+      V           A + I  GC   CT+C+    RG   S
Sbjct: 100 ------NLDRSPMDEVFIWDAV-----------ATIPIANGCLGQCTYCITRLARGRVKS 142

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           RS   ++   +K ++    EI +  Q+  A  G+ +  E    ++L+ S++ I G   LR
Sbjct: 143 RSKEWILRLVKKALEQRAVEIRISAQDTAA-YGRDIGTE---LAELINSITAIPGKFYLR 198

Query: 265 YTTSHPRD---MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
                PR+   +   LI A+ +   +  +LHLPVQSG + IL  MNR +   ++ +I+  
Sbjct: 199 VGMMEPRETLRILPELIDAYSN-PKVYKFLHLPVQSGDNEILHRMNRGYKVEDFIKIVRN 257

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
            R   P++ +S+D IVGFPGE D+ F  TM L+ +I        ++SPR  TP       
Sbjct: 258 FRQRFPEMTLSTDIIVGFPGENDESFENTMKLIKEIKPEILNITRFSPRPKTPAYKWKRP 317

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
               VK E    L     E      ++ +G+  +V++   GK  GK + RS   + VVL+
Sbjct: 318 STNKVK-EWSQKLAALHMENMHKRFESMLGKEFKVIVPSRGKR-GKYLARSQNYEPVVLD 375

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
             N  IG    +RIT  + S L G+++
Sbjct: 376 --NAVIGREYIIRITHYEKSHLVGKIL 400


>gi|170751706|ref|YP_001757966.1| MiaB-like tRNA modifying enzyme [Methylobacterium radiotolerans JCM
           2831]
 gi|170658228|gb|ACB27283.1| MiaB-like tRNA modifying enzyme [Methylobacterium radiotolerans JCM
           2831]
          Length = 408

 Score =  268 bits (685), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 123/436 (28%), Positives = 190/436 (43%), Gaps = 36/436 (8%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
           ++GC++N  +S  +     + G          D +V+NTC +  +A  +    + R+   
Sbjct: 7   TFGCRLNTVESEALRVHAAADG---------RDRVVVNTCAVTAEAGRQARKAIRRLA-- 55

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
                +E     +VV GC A+ E E      P V  +VG     R       A     V+
Sbjct: 56  -----RERPGAEIVVTGCGAEVETEA-YAAMPEVARLVGNAEKLRPEGWSAAATGPGAVM 109

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
               +   + E ++             AF+ +Q GCD  CTFCV+P+ RG+  S   + V
Sbjct: 110 AARAAEPTRVEAVA---------GHTRAFVPVQNGCDHRCTFCVIPFGRGVSRSVPEADV 160

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS-LSEIKGLVRLRYTTSH 269
           + +   ++  G  E+ L G ++ A  G+ L G   +   L  + L  +  L RLR ++  
Sbjct: 161 IAQVETIVARGGREVVLTGVDLTA-YGRDLPGTAPSLGGLARAILRAVPDLARLRLSSID 219

Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329
             +  D L+ A  + + LMP+LHL +Q+G D ILK M RRH   +  +  + +R +RPD 
Sbjct: 220 SVEADDALLAAIAEEERLMPHLHLSLQAGDDLILKRMRRRHLRADAIRFCETVRRLRPDT 279

Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAE 389
              +D I GFP ET+  F  ++DLV   G      F YSPR GTP + M   V       
Sbjct: 280 VFGADLIAGFPTETEAQFDRSLDLVAACGLTHLHVFPYSPRPGTPAARMPP-VAPEAIRA 338

Query: 390 RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGD 449
           R   L+    +      DA VG+ + VL E+ G      VGRS    +V L       G 
Sbjct: 339 RAARLRAAGADALRRHLDAQVGRRLTVLAERGG------VGRSADFTAVRLPGVPE-AGT 391

Query: 450 IIKVRITDVKISTLYG 465
              V +     + L G
Sbjct: 392 FHDVAVAGHDGARLIG 407


>gi|317012545|gb|ADU83153.1| hypothetical protein HPLT_03685 [Helicobacter pylori Lithuania75]
          Length = 439

 Score =  268 bits (685), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 96/427 (22%), Positives = 182/427 (42%), Gaps = 28/427 (6%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++  + S GC  N+ DS  M        Y   N    AD+I++NTC   E A ++    +
Sbjct: 7   KQLCLISLGCSKNLVDSEVMLGKL--YNYTLTNDAKSADVILINTCGFIESAKQESIQTI 64

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
                 K          +++ +GC+++   +EI    P V++  G   Y ++  L+  A+
Sbjct: 65  LNAAKDKKE------GAILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDILI--AK 116

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
              +  +  +  E    R+            V A++ I EGC++ C+FC +P  +G   S
Sbjct: 117 KQNQFSEQVFLSEHYNARI-------ITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQS 169

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R L  ++ E   L   G  ++T + Q+ +++      G+K     L+ ++ + + L   R
Sbjct: 170 RELDSILKEVEDLALKGYKDMTFIAQDSSSFLYD--KGQKDGLIQLIRAIDKQQALKSAR 227

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
               +P   +  LI A     +   Y  +P+Q  SD +LK M R  +   + +++D ++ 
Sbjct: 228 ILYLYPSSTTLELISAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQ 287

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           V+    I S  IVG P E + +F      +D+  + +   F +S    T   ++ E+V +
Sbjct: 288 VKESF-IRSTIIVGHPEENEGEFEELSAFLDEFCFDRLNIFAFSAEENTHAYSL-EKVPK 345

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GR----SPWLQSVV 439
                R+  L K   + Q     A + + I+ L+E   KE       R    +P +   +
Sbjct: 346 KTINARIKALNKIALKHQNHSFKALLNKPIKALVE--NKEGEYFYKARDLRWAPEVDGEI 403

Query: 440 LNSKNHN 446
           L + +  
Sbjct: 404 LINDSEL 410


>gi|256370700|ref|YP_003108525.1| putative MiaB-like protein [Candidatus Sulcia muelleri SMDSEM]
 gi|256009492|gb|ACU52852.1| putative MiaB-like protein [Candidatus Sulcia muelleri SMDSEM]
          Length = 435

 Score =  268 bits (685), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 115/430 (26%), Positives = 212/430 (49%), Gaps = 17/430 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    + GC++N  ++  + + F  +GYE V  +  AD+ ++NTC +   A +K      
Sbjct: 5   KVAFYTLGCKLNFTETDTIINKFLIKGYEYVKYISFADIYIINTCSVTNNAEKK------ 58

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            ++ L    +K   +  +V  GC +Q   ++I      +++++G +  +++   LE    
Sbjct: 59  -LKKLVKIALKNNVNAFIVAIGCYSQVNPKKI-SLINGIDLIIGAKKKFKIINYLEN-LS 115

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            K+     YS   K +         NR R   +FL IQ+GCD  C++C +P  RG   S 
Sbjct: 116 KKKTAKIYYSDIKKSDLYFPSYSKLNRTR---SFLKIQDGCDYKCSYCTIPKARGTSKSD 172

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI--KGLVRL 263
            ++ ++  A+ +I  G+ EI L G N+  + GK L   K  F +L+ ++     K ++R+
Sbjct: 173 DITNIIKYAKNVIKKGIKEIVLTGVNIGDF-GKNLKP-KSNFLELMKAMDSFFYKKIIRI 230

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R ++  P  ++D LI       + + + H+P+QSGSD IL  M RR+++  + + I +I+
Sbjct: 231 RISSIEPNLLNDDLINFILKSKIFVHHFHIPLQSGSDEILNKMKRRYSSNFFEKKIIQIK 290

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           ++ P+  I SD IVGFPGE + +F  T   + K+  +    F YS R+ T   +M   + 
Sbjct: 291 NLMPNACIGSDVIVGFPGEQEKNFIETYLFLSKLDISYFHVFSYSERINTEAISMKNSIP 350

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
           + ++ +R   L+   + ++ +F    + +  +VL EK  K  G + G +          K
Sbjct: 351 QKIRYKRSKILRILSKRKKYNFYYKNINKKKKVLFEKKNK-SGYIYGYTDNFIRTKTTWK 409

Query: 444 NHNIGDIIKV 453
           +  I  I KV
Sbjct: 410 SFLINQIKKV 419


>gi|261839446|gb|ACX99211.1| hypothetical protein HPKB_0614 [Helicobacter pylori 52]
          Length = 439

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 95/427 (22%), Positives = 184/427 (43%), Gaps = 28/427 (6%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++  + S GC  N+ DS  M        Y   N    AD+I++NTC   E A ++    +
Sbjct: 7   KQLCLISLGCSKNLVDSEVMLGKL--YNYTLTNDTKSADVILINTCGFIESAKQESIQTI 64

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
                 K          +++ +GC+++   +EI    P V++  G   Y ++  ++  A+
Sbjct: 65  LNAAKDKKK------GAILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMI--AK 116

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
              +  +  +  E    R+            V A++ I EGC++ C+FC +P  +G   S
Sbjct: 117 KQNQFSEQVFLSEHYNARI-------ITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQS 169

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R L  ++ E   L   G  ++T + Q+ +++      G+K     L+ ++ + + L   R
Sbjct: 170 RELDSILKEVENLALKGYTDMTFIAQDSSSFLYD--KGQKDGLIQLIKAIDKQQALKSGR 227

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
               +P   +  LI A     +   Y  +P+Q  SD +LK M R  +   + +++D ++ 
Sbjct: 228 ILYLYPSSTTLELIGAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQ 287

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           V+    I S  IVG P E + +F      +D+  + +   F +S    T   ++ E+V +
Sbjct: 288 VKESF-IRSTIIVGHPEENEGEFEELSAFLDEFRFDRLNIFAFSAEENTHAYSL-EKVPK 345

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GR----SPWLQSVV 439
            +   R+  L K   + Q +   A + + I+ L+E   KE       R    +P +   +
Sbjct: 346 KIINARIKALNKIALKHQNNSFKALLNKPIKALVE--NKEGEYFYKARDLRWAPEVDGEI 403

Query: 440 LNSKNHN 446
           L + +  
Sbjct: 404 LINDSEL 410


>gi|317182043|dbj|BAJ59827.1| hypothetical protein HPF57_0753 [Helicobacter pylori F57]
          Length = 439

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 95/427 (22%), Positives = 184/427 (43%), Gaps = 28/427 (6%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++  + S GC  N+ DS  M        Y   N    AD+I++NTC   E A ++    +
Sbjct: 7   KQLCLISLGCSKNLVDSEVMLGKL--YNYTLTNDAKSADVILINTCGFIESAKQESIQTI 64

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
                 K          +++ +GC+++   +EI    P V++  G   Y ++  ++  A+
Sbjct: 65  LNAAKDKKK------GAILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMI--AK 116

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
              +  +  +  E    R+            V A++ I EGC++ C+FC +P  +G   S
Sbjct: 117 KQNQFSEQVFLSEHYNARI-------ITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQS 169

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R L  ++ E   L   G  ++T + Q+ +++      G+K     L+ ++ + + L   R
Sbjct: 170 RELDSILKEVEDLALKGYTDMTFIAQDSSSFLYD--KGQKDGLIQLISAIDKQQALKSTR 227

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
               +P   +  LI A     +   Y  +P+Q  SD +LK M R  +   + +++D ++ 
Sbjct: 228 ILYLYPSSTTLELIGAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQ 287

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           V+    I S  IVG P E + +F      +D+  + +   F +S    T   ++ E+V +
Sbjct: 288 VKESF-IRSTIIVGHPEENEGEFEELSAFLDEFRFDRLNIFAFSAEENTHAYSL-EKVPK 345

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GR----SPWLQSVV 439
            +   R+  L K   + Q +   A + + I+ L+E   KE       R    +P +   +
Sbjct: 346 KIINARIKALNKIALKHQNNSFKALLNKPIKALVE--NKEGEYFYKARDLRWAPEVDGEI 403

Query: 440 LNSKNHN 446
           L + +  
Sbjct: 404 LINDSEL 410


>gi|325831452|ref|ZP_08164706.1| tRNA methylthiotransferase YqeV [Eggerthella sp. HGA1]
 gi|325486706|gb|EGC89154.1| tRNA methylthiotransferase YqeV [Eggerthella sp. HGA1]
          Length = 417

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 113/406 (27%), Positives = 177/406 (43%), Gaps = 34/406 (8%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           F V + GC++N  +S         +G E       ADLIV+NTC +  +A +K    + R
Sbjct: 10  FAVVNLGCKVNRVESDDAAARLALRGVETSE--ASADLIVVNTCTVTGEAEKKTRKAVRR 67

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
                   ++      V+V GC A  +          V+VV   Q    +  L + A F 
Sbjct: 68  A-------LRANDHARVLVTGCAAAIDAAFYEALDERVSVVGKAQLAQAIDVLFDEAPFS 120

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
                         E   +  G   R R     + +Q+GCD  CT+C+V   RG   SR 
Sbjct: 121 ------------PGEDAPLHIGSGFRTR---VGVKVQDGCDNACTYCIVHVARGRATSRP 165

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG---------LDGEKCTFSDLLYSLSEI 257
              VV E       G  EI L G N+ ++   G             +    +     +  
Sbjct: 166 ADDVVRECASYARAGAREIVLTGINLGSYCDGGRRDPSAIRLAALLRRLLDETADLHAPG 225

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLD-VLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           +   R R ++  PRD+ D LI      D  +  +LHLP+Q+GS ++L+ M R + A  + 
Sbjct: 226 EAPARFRVSSIEPRDVDDALIDLLASADGRVCRHLHLPLQAGSSKVLREMARPYDAERFV 285

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
            +++R+    P +A+S+D I GFPGETD +F+ T+D+     +A+  +F YSPR+GTP +
Sbjct: 286 ALVERLYRRIPQLALSTDIIAGFPGETDAEFQETLDVARACRFAKIHAFPYSPRIGTPAA 345

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422
              +QV    K  R   L+    E + S      G +   L+E+ G
Sbjct: 346 ERADQVPPAFKEARAAMLRALGDELRASERARRAGTVELALVEEGG 391


>gi|308184518|ref|YP_003928651.1| hypothetical protein HPSJM_03720 [Helicobacter pylori SJM180]
 gi|308060438|gb|ADO02334.1| hypothetical protein HPSJM_03720 [Helicobacter pylori SJM180]
          Length = 439

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 95/428 (22%), Positives = 184/428 (42%), Gaps = 30/428 (7%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++  + S GC  N+ DS  M        Y   +    AD+I++NTC   E A ++    +
Sbjct: 7   KQLCLISLGCSKNLVDSEMMLGKL--YNYTLTDDAKKADVILINTCGFIESAKQESIQTI 64

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
                 K          +++ +GC+++   +EI    P V++  G   Y ++  L+  A+
Sbjct: 65  LNAAKDKKE------GAILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDILI--AK 116

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
              +  +  +  E    R+            V A++ I EGC++ C+FC +P  +G   S
Sbjct: 117 KQNQFSEQVFLSEHYNTRI-------ITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQS 169

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R L  ++ E   L   G  ++T + Q+ +++      G+K     L+ ++ + + L   R
Sbjct: 170 RELDSILKEVENLALKGYKDMTFIAQDSSSFLYD--KGQKDGLIQLIRAIDKQQALKSAR 227

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
               +P   +  LI A     V   Y  +P+Q  SD +LK M R  +   + +++D ++ 
Sbjct: 228 ILYLYPSSTTLELIGAIESSPVFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQ 287

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           V+    I S  IVG P E + +F      +D+  + +   F +S    T   ++ E+V +
Sbjct: 288 VKESF-IRSTIIVGHPEENEGEFEELSAFLDEFQFDRLNIFAFSAEENTHAYSL-EKVPK 345

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV--GR----SPWLQSV 438
                R+  L K   + Q     A + + I+ L+E    ++G+     R    +P +   
Sbjct: 346 KTINARIKALNKIALKHQNHSFKALLNKPIKALVE---HKEGEYFYKARDLRWAPEVDGE 402

Query: 439 VLNSKNHN 446
           +L + +  
Sbjct: 403 ILINDSAL 410


>gi|315586597|gb|ADU40978.1| possible 2-methylthioadenine synthetase [Helicobacter pylori 35A]
          Length = 439

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 95/427 (22%), Positives = 184/427 (43%), Gaps = 28/427 (6%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++  + S GC  N+ DS  M        Y   N    AD+I++NTC   E A ++    +
Sbjct: 7   KQLCLISLGCSKNLVDSEVMLGKL--YNYTLTNDTKSADVILINTCGFIESAKQESIQTI 64

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
                 K          +++ +GC+++   +EI    P V++  G   Y ++  ++  A+
Sbjct: 65  LNAAKDKKK------GAILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMI--AK 116

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
              +  +  +  E    R+            V A++ I EGC++ C+FC +P  +G   S
Sbjct: 117 KQNQFSEQVFLSEHYNARI-------ITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQS 169

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R L  ++ E   L   G  ++T + Q+ +++      G+K     L+ ++ + + L   R
Sbjct: 170 RELDSILKEVEDLALKGYTDMTFIAQDSSSFLYD--KGQKDGLIQLIKAIDKQQVLKSAR 227

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
               +P   +  LI A     +   Y  +P+Q  SD +LK M R  +   + +++D ++ 
Sbjct: 228 ILYLYPSSTTLELIGAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQ 287

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           V+    I S  IVG P E + +F      +D+  + +   F +S    T   ++ E+V +
Sbjct: 288 VKESF-IRSTIIVGHPEENEGEFEELSAFLDEFRFDRLNIFAFSAEENTHAYSL-EKVPK 345

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GR----SPWLQSVV 439
            +   R+  L K   + Q +   A + + I+ L+E   KE       R    +P +   +
Sbjct: 346 KIINARIKALNKIALKHQNNSFKALLNKPIKALVE--NKEGEYFYKARDLRWAPEVDGEI 403

Query: 440 LNSKNHN 446
           L + +  
Sbjct: 404 LINDSEL 410


>gi|322372210|ref|ZP_08046751.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haladaptatus
           paucihalophilus DX253]
 gi|320548219|gb|EFW89892.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haladaptatus
           paucihalophilus DX253]
          Length = 417

 Score =  267 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 110/449 (24%), Positives = 196/449 (43%), Gaps = 40/449 (8%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R+ +++YGC  N  +S ++E      G+ RV   + AD+ ++NTC + EK      + + 
Sbjct: 3   RYHIETYGCTSNRGESRQIESALRDAGHYRVEGPEQADVAIMNTCTVVEKTE---RNMVR 59

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R + L++          +++ GC+A A+G+E   R+  V+  +                 
Sbjct: 60  RAKELQSE------TADLIITGCMALAQGDEF--RTEDVDAQIMHW-------------- 97

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                D   +     E  +   G      GV   L I  GC   C++C+  +  G   S 
Sbjct: 98  -----DDVPTAVTNGECPTPGPGVEPVLDGVVGILPIARGCMSDCSYCITKHATGKIDSP 152

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           S+ + V++AR L+  G  E+ + GQ+     G    GE+     L    +EI+G  R+R 
Sbjct: 153 SVEENVEKARALVHAGAKELRITGQDTG-VYGWDR-GERKLHVLLDRICNEIEGDFRVRV 210

Query: 266 TTSHP---RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
             ++P     + + L +   + D L  ++H PVQSGS+ +L  M R+H   EY +I++  
Sbjct: 211 GMANPKGVHGIREELAQVFAENDELYNFIHAPVQSGSNDVLGDMRRQHQVEEYVEIVETF 270

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
                   +S+DFIVGFP ETDDD   +M L+ +    +    ++S R  T  + M   +
Sbjct: 271 DEYLDYWTLSTDFIVGFPTETDDDHEQSMALLRETRPEKLNVTRFSKRPNTDAAKMKG-L 329

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
               K ER   + +   +   +  D  VG    V++ + G     +  R    + +++ +
Sbjct: 330 GGTKKKERSKEMSELKMDIVGAAYDEMVGTEKRVMVVEEGT-GDSVKCRDEAYRQIIVQN 388

Query: 443 KNH---NIGDIIKVRITDVKISTLYGELV 468
                   GD + V +T  +    +G  V
Sbjct: 389 ATEHGIEPGDFLDVEVTSHQTVYAFGTPV 417


>gi|296446184|ref|ZP_06888132.1| MiaB-like tRNA modifying enzyme [Methylosinus trichosporium OB3b]
 gi|296256378|gb|EFH03457.1| MiaB-like tRNA modifying enzyme [Methylosinus trichosporium OB3b]
          Length = 400

 Score =  267 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 113/396 (28%), Positives = 173/396 (43%), Gaps = 53/396 (13%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
             V ++GC++NV DS  +      +G          DL+++NTC +  +A  +    + R
Sbjct: 4   VEVVTFGCRLNVVDSQSLLSDARVKG---------GDLVIVNTCAVTAEATRQARQAIRR 54

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           +        +E     +VVAGC A+ +       +  V  V+G                 
Sbjct: 55  LH-------RERPSAEIVVAGCAARIDPASFATMA-GVTRVLG----------------- 89

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
                         E           +    AFL +Q GCD  C+FCV+P+ RG   S +
Sbjct: 90  --------------EAQDAPLARSASEGQTRAFLAVQNGCDHRCSFCVIPFGRGPSRSAA 135

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
            + V+ EAR+L+  G  EI L G ++ ++R + +       +     L     L RLR +
Sbjct: 136 PADVIAEARRLVAVGRREIVLTGVDLTSYRHEDV----TLGALAREILRATPQLERLRLS 191

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
           +    +    L+   G+   L P+LHL +QSG D  LK M RRH+  +       +R  R
Sbjct: 192 SIDCIETDADLLDLMGEEPRLAPHLHLSLQSGDDLTLKRMKRRHSRADAIHFCAEMRDAR 251

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           PDI + +DFI GFP ET+D F  T+DLV++ G      F +SPR GTP + M  QVD   
Sbjct: 252 PDIVLGADFIAGFPTETEDMFARTLDLVEECGLTHLHVFPFSPRPGTPAARMP-QVDGAT 310

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422
              R   L+           +A  G+ + VL E+ G
Sbjct: 311 VKARAARLRAAGDAALTRHLEAQRGKRLRVLTERGG 346


>gi|317180496|dbj|BAJ58282.1| hypothetical protein HPF32_0700 [Helicobacter pylori F32]
          Length = 439

 Score =  267 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 95/427 (22%), Positives = 184/427 (43%), Gaps = 28/427 (6%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++  + S GC  N+ DS  M        Y   N    AD+I++NTC   E A ++    +
Sbjct: 7   KQLCLISLGCSKNLVDSEVMLGKL--YNYTLTNDTKSADVILINTCGFIESAKQESIQTI 64

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
                 K          +++ +GC+++   +EI    P V++  G   Y ++  ++  A+
Sbjct: 65  LNAAKDKKK------GAILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMI--AK 116

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
              +  +  +  E    R+            V A++ I EGC++ C+FC +P  +G   S
Sbjct: 117 KQNQFSEQVFLSEHYNARI-------ITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQS 169

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R L  ++ EA  L   G  ++T + Q+ +++      G+K     L+ ++ + + L   R
Sbjct: 170 RELDSILKEAENLALKGYKDMTFIAQDSSSFLYD--KGQKDGLIQLISAIDKQQALKSAR 227

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
               +P   +  LI A     +   Y  +P+Q  SD +LK M R  +   + ++++ ++ 
Sbjct: 228 ILYLYPSSTTLELIGAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLNAMKQ 287

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           V+    I S  IVG P E + +F      +D+  + +   F +S    T   ++ E+V +
Sbjct: 288 VKESF-IRSTIIVGHPEENESEFEELSAFLDEFRFDRLNIFAFSAEENTHAYSL-EKVPK 345

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GR----SPWLQSVV 439
            +   R+  L K   + Q     A + + I+ L+E   KE       R    +P +   +
Sbjct: 346 KIINARIKALNKIALKHQNHSFKALLNKPIKALVE--NKEGEYFYKARDLRWAPEVDGEI 403

Query: 440 LNSKNHN 446
           L + +  
Sbjct: 404 LINDSEL 410


>gi|255322313|ref|ZP_05363459.1| conserved hypothetical protein [Campylobacter showae RM3277]
 gi|255300686|gb|EET79957.1| conserved hypothetical protein [Campylobacter showae RM3277]
          Length = 429

 Score =  267 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 110/436 (25%), Positives = 199/436 (45%), Gaps = 40/436 (9%)

Query: 15  SQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIRE 74
           S +  Q    ++ + K++GC+ N+YD+  M+       Y+ V+  ++AD++V+N+C +  
Sbjct: 5   SNLTLQEPRREKVYFKTFGCRTNIYDTELMKSYVKD--YDIVSDENEADIVVVNSCTVTN 62

Query: 75  KAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYY 134
            A     S++  I+              V++ GC A ++G+E+  +   V  V+G     
Sbjct: 63  SADSGARSYINGIKK---------RGARVILTGCGAVSKGKELFNK-SAVFGVIGASKKE 112

Query: 135 RLPELLERARFGKRVVDTDYSVEDKFE--RLSIVDGG--YNRKRGVTAFLTIQEGCDKFC 190
            +  LL+             S +  FE   L  +D     N +    AF+ IQEGCD  C
Sbjct: 113 DINALLK-------------SQDPFFELGNLKSIDKNIVTNYENHTKAFIKIQEGCDFAC 159

Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDL 250
           ++C++P  RG   S     ++ EA+ L  NG  E+ L G N+ +  GK       +   L
Sbjct: 160 SYCIIPAVRGKARSMDEEAILREAKILAYNGYNELVLTGTNIGS-YGKDT---GSSLGRL 215

Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
           L  L +I G+ R+R  +  P  + +   +   +   L  +LH+ +Q  S+ +L+ M RR+
Sbjct: 216 LGRLGKIGGIKRIRLGSIEPSQIDESFREILRES-WLERHLHIALQHTSEAMLRIMRRRN 274

Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370
            A+   ++   +  +    A+ +D+IVG PGE+++ +   +D   K        F YSPR
Sbjct: 275 QAFRDLELFLELSQM--GFALGTDYIVGHPGESEEIWSEALDNFKKFPLTHLHCFAYSPR 332

Query: 371 LGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQ--IIEVLIEKHGKEKGKL 428
            GT  ++M   V+ +V   RL  L++ + E    F      +   + VL+E+   E    
Sbjct: 333 SGTHSADMKVDVNGDVAKARLKVLKQIVAENNFKFRQEHAKKCGSLNVLVEQLNGE--FY 390

Query: 429 VGRSPWLQSVVLNSKN 444
            G   +   V + +  
Sbjct: 391 EGFDQFYNKVKIKTDK 406


>gi|67462443|ref|XP_647883.1| RNA modification enzymes, MiaB-family [Entamoeba histolytica
           HM-1:IMSS]
 gi|56463504|gb|EAL42497.1| RNA modification enzymes, MiaB-family [Entamoeba histolytica
           HM-1:IMSS]
          Length = 438

 Score =  267 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 100/458 (21%), Positives = 201/458 (43%), Gaps = 46/458 (10%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYER----VNSMDDADLIVLNTCHIREKAAEKVY 81
                +YGC  NV DS  M+    + GY+              +V+N+C ++  + + + 
Sbjct: 9   TIKFLTYGCSHNVSDSEVMQKDLINAGYKIDSSSTPISSKYKAVVINSCTVKNPSQQAID 68

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
               +             ++ +V+AGCV QA+ +           +VG    +++ E +E
Sbjct: 69  VVQKKCEEA---------NVPLVIAGCVPQADPKACHCSKKC--SIVGVDQLHKITEAVE 117

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVD-GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           +A   +         +   ER ++VD   + R   +   +    GC+  C++C   + RG
Sbjct: 118 KATHNEG--------QSYLERGALVDIDDHVRSNPLIDIIVTCTGCENACSYCKTKHARG 169

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK-- 258
              S  + ++V   ++ +D GV EI L G+++ A  G  ++    TF  +L  + E+   
Sbjct: 170 GLRSYPIEELVKRVQQSVDEGVKEIRLTGEDIGA-YGLDIND---TFPHMLERICEVVDG 225

Query: 259 ------GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
                 G+V   Y   +  ++ + L++          +LH+P+QSGS  +L +M R++T 
Sbjct: 226 KAMLRIGMVNPPYIIKYFNEIVNILLR-----PCCFKFLHIPIQSGSTSVLDAMKRKYTR 280

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
            E+  + +R+R   P I+I++D I GFP ETD+D + T++ ++K  +      +   R G
Sbjct: 281 EEFDDVCNRLRIAVPGISIATDIICGFPTETDEDHKKTLECIEKHKFPVVNISQMYIRPG 340

Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS 432
           TP + M +Q++  +  +R   + +             VG+   V I +   +     G  
Sbjct: 341 TPAAKM-KQINSKIVKQRSREVTELFD--SYLPYTNLVGKECVVWINEMAHDGINYAGHD 397

Query: 433 PWLQSVVLN--SKNHNIGDIIKVRITDVKISTLYGELV 468
                V++      + +G  ++V+I +     +  E++
Sbjct: 398 ISFVQVIVPHCENENLLGKSVRVKIIEAGKFFVRSEII 435


>gi|317177437|dbj|BAJ55226.1| hypothetical protein HPF16_0629 [Helicobacter pylori F16]
          Length = 439

 Score =  267 bits (683), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 95/427 (22%), Positives = 185/427 (43%), Gaps = 28/427 (6%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++  + S GC  N+ DS  M        Y   N    AD+I++NTC   E A ++    +
Sbjct: 7   KQLCLISLGCSKNLVDSEVMLGKL--YNYTLTNDTKSADVILINTCGFIESAKQESIQTI 64

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
                 K          +++ +GC+++   +EI    P V++  G   Y ++  ++  A+
Sbjct: 65  LNAAKDKK------RGAILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMI--AK 116

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
              +  +  +  E    R+            V A++ I EGC++ C+FC +P  +G   S
Sbjct: 117 KQNQFSEQVFLSEHYNARI-------ITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQS 169

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R L  ++ E   L+  G  ++T + Q+ +++      G+K     L+ ++ + + L   R
Sbjct: 170 RELDSILKEVENLVLKGYTDMTFIAQDSSSFLYD--KGQKDGLIQLISAIDKQQALKSAR 227

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
               +P   +  LI A     +   Y  +P+Q  SD +LK M R  +   + +++D ++ 
Sbjct: 228 ILYLYPSSTTLELIGAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQ 287

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           V+    I S  IVG P E + +F      +D+  + +   F +S    T   ++ E+V +
Sbjct: 288 VKESF-IRSTIIVGHPEENEGEFEELSAFLDEFRFDRLNIFAFSAEENTHAYSL-EKVPK 345

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GR----SPWLQSVV 439
            +   R+  L K   + Q +   A + + I+ L+E   KE       R    +P +   +
Sbjct: 346 KIINARIKALNKIALKHQNNSFKALLNKPIKALVE--NKEGEYFYKARDLRWAPEVDGEI 403

Query: 440 LNSKNHN 446
           L + +  
Sbjct: 404 LINDSEL 410


>gi|15645354|ref|NP_207528.1| hypothetical protein HP0734 [Helicobacter pylori 26695]
 gi|81555823|sp|O25434|RIMO_HELPY RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|2313856|gb|AAD07780.1| conserved hypothetical protein [Helicobacter pylori 26695]
          Length = 439

 Score =  267 bits (683), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 95/427 (22%), Positives = 182/427 (42%), Gaps = 28/427 (6%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++  + S GC  N+ DS  M        Y   N    AD+I++NTC   E A ++    +
Sbjct: 7   KQLCLISLGCSKNLVDSEVMLGKL--YNYTLTNDAKSADVILINTCGFIESAKQESIQTI 64

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
                 K          +++ +GC+++   +EI    P V++  G   Y ++  ++  A+
Sbjct: 65  LNAAKDKKE------GAILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMI--AK 116

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
              +  +  +  E    R+            V A++ I EGC++ C+FC +P  +G   S
Sbjct: 117 KQNQFSEQVFLSEHYNARI-------ITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQS 169

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R L  ++ E   L   G  ++T + Q+ +++      G+K     L+ ++ + + L   R
Sbjct: 170 RELDSILKEVENLALKGYTDMTFIAQDSSSFLYD--KGQKDGLIQLIRAIDKQQALKSAR 227

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
               +P   +  LI A     +   Y  +P+Q  SD +LK M R  +   + +++D ++ 
Sbjct: 228 ILYLYPSSTTLELIGAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQ 287

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           V+    I S  IVG P E + +F      +D+  + +   F +S    T   ++ E+V +
Sbjct: 288 VKESF-IRSTIIVGHPEENESEFEELSAFLDEFQFDRLNIFAFSAEENTHAYSL-EKVPK 345

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GR----SPWLQSVV 439
                R+  L K   + Q     A + + I+ L+E   KE       R    +P +   +
Sbjct: 346 KTINARIKALNKIALKHQNHSFKALLNKPIKALVE--NKEGEYFYKARDLRWAPEVDGEI 403

Query: 440 LNSKNHN 446
           L + +  
Sbjct: 404 LINDSEL 410


>gi|57168872|ref|ZP_00368002.1| MiaB-like tRNA modifying enzyme [Campylobacter coli RM2228]
 gi|305431977|ref|ZP_07401144.1| 2-methylthioadenine synthetase [Campylobacter coli JV20]
 gi|57019708|gb|EAL56394.1| MiaB-like tRNA modifying enzyme [Campylobacter coli RM2228]
 gi|304445061|gb|EFM37707.1| 2-methylthioadenine synthetase [Campylobacter coli JV20]
          Length = 418

 Score =  267 bits (683), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 101/423 (23%), Positives = 193/423 (45%), Gaps = 31/423 (7%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + ++ F K++GC+ N+YD+  ++       YE VN  + A +IV+N+C +   A   + S
Sbjct: 1   MKEKVFFKTFGCRTNIYDTELLKSYVKD--YEIVNDEEKAQIIVVNSCTVTNGADSGIKS 58

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
           ++  ++            + V++ GC A ++G+E+L +   V  V+G     ++ E L  
Sbjct: 59  YINSMQK---------KGVRVILTGCGAVSKGKELLDK-KQVFGVLGASNKDKINEFLGL 108

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
                 + + ++  +D              +    AF+ IQEGCD  C++C++P  RG  
Sbjct: 109 KTSFYELGNLNFIDKDIVCEY---------ENHTKAFVKIQEGCDFACSYCIIPSVRGKS 159

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            S     ++ +   L  NG  E+ L G N+ ++  K       T   LL  + +I G+ R
Sbjct: 160 RSVDEQALLRQVEILGANGYSEVVLTGTNIGSYGLK----NGTTLGKLLQKMGQISGIKR 215

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R  +  P  + +  ++   D   +  +LH+ +Q  S+++L+ M RR       ++ + I
Sbjct: 216 IRLGSLEPAQIDESFLE-ILDERWMERHLHIALQHTSEKMLRIMRRRSHTDNDLKLFNTI 274

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
            S     A+ +DFIVG PGET++ +   +    +       +F +SPR  T  + M + +
Sbjct: 275 ASK--GYALGTDFIVGHPGETEELWHEALKHFQEFPLTHIHAFIFSPRNNTHSATMKDTI 332

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
           +  V  ERL  L+  +      F    V   +E+L+E   ++ G   G   +   + + S
Sbjct: 333 NGAVAKERLNTLKVIIENNNYEFRKR-VKTPLEILVE--NQKDGFFEGYDQFFNKIKIKS 389

Query: 443 KNH 445
              
Sbjct: 390 SKD 392


>gi|256830661|ref|YP_003159389.1| MiaB family RNA modification protein [Desulfomicrobium baculatum
           DSM 4028]
 gi|256579837|gb|ACU90973.1| RNA modification enzyme, MiaB family [Desulfomicrobium baculatum
           DSM 4028]
          Length = 429

 Score =  267 bits (683), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 118/447 (26%), Positives = 214/447 (47%), Gaps = 44/447 (9%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           FF+ + GC++N Y+S  + +   + G    +    AD++++N+C + E+A       +  
Sbjct: 9   FFLTTQGCKVNQYESQAIREALVADGLMETHDPSLADIVLINSCAVTERA-------VLD 61

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           +  L            +VVAGC  +A+ E IL    +V+ V+              A+  
Sbjct: 62  LAKLVRGFAAADPKPWIVVAGCAVEADRERILALC-LVDEVI--------------AQKD 106

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           K  +         F  LSI   GY+R RGV   + +Q+GC   CT+C++P TRG  +SR 
Sbjct: 107 KAALVRMGEPSAPFPALSI--SGYHRARGV---IKVQDGCSHGCTYCIIPATRGRSVSRP 161

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE-----IKGLV 261
            ++V+DEA +L++ G+ EI+L G N+    G+ L G    F DLL  + +       G  
Sbjct: 162 PAEVLDEAGRLLEAGIREISLCGINLR-HYGRDLPG-TTDFWDLLAEVDQALSPRWAGRA 219

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA-YEYRQIID 320
           RLR  +  P D++   +       ++ P+LH+ +QSGS  +L+ M R H    +    + 
Sbjct: 220 RLRLGSLEPGDLNAKALSTLAQSRLMTPHLHISLQSGSPEVLRRMGRGHYGLEQIFAFLH 279

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
            +R + P   + +D I GFPGET      T+++V ++  + A  F YS R GTP +    
Sbjct: 280 DLRDIWPVFGLGADLIAGFPGETQSHADETLEVVKRLPLSYAHVFPYSERPGTPAALFKG 339

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQI--IEVLIEKHGKEKGKLVGRSPWLQSV 438
            V  +++ ER   L++++  ++  F    + ++  ++V++E+ G       G + +    
Sbjct: 340 AVPGHIRRERAKALRREVARKRADFLHELL-KLPFMDVILEEGG------TGVNEFYVEC 392

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYG 465
            ++       ++++V  T +  S L  
Sbjct: 393 SISGAPPQARELLRVIPTGLTSSGLKA 419


>gi|317010954|gb|ADU84701.1| putative 2-methylthioadenine synthetase [Helicobacter pylori
           SouthAfrica7]
          Length = 438

 Score =  267 bits (682), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 96/424 (22%), Positives = 184/424 (43%), Gaps = 28/424 (6%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++  + S GC  N+ DS  M        Y   N   +AD+I++NTC   E A ++    +
Sbjct: 6   KQLCLISLGCSKNLVDSEVMLGKL--YNYTLTNDAKNADVILINTCGFIESAKQESIQTI 63

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
                 K          L++ +GC+++   +EI    P V++  G   Y ++  L+  A+
Sbjct: 64  LNAAKDKKK------GALLIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDILI--AK 115

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
              +  +  +  E    R+            V A++ I EGC++ C+FC +P  +G   S
Sbjct: 116 KQNQFSEQVFLSEHYNARI-------ITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLHS 168

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R L  ++ E   L   G  ++T + Q+ +++      G+K     L+ ++ + + L   R
Sbjct: 169 RELDSILKEVEDLALKGYKDMTFIAQDSSSFLYD--KGQKDGLIQLIKAIDKQQALKSAR 226

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
               +P   +  LI A     +   Y  +P+Q  SD +LK M R  +   + ++++ ++ 
Sbjct: 227 ILYLYPSSTTLELIGAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLNAMKQ 286

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           V+    I S  IVG P E + +F      +D+  + +   F +S    T   ++ E+V +
Sbjct: 287 VQESF-IRSTIIVGHPEENEGEFEELSAFLDEFQFDRLNIFAFSAEENTHAYSL-EKVPK 344

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GR----SPWLQSVV 439
            +   R+  L K   + Q +   A + + I+ L+E   KE       R    +P +   +
Sbjct: 345 KIINARIKALNKIALKHQNNSFKALLNKPIKALVE--NKEGEYFYKARDLRWAPEVDGEI 402

Query: 440 LNSK 443
           L + 
Sbjct: 403 LIND 406


>gi|254779289|ref|YP_003057394.1| hypothetical protein HELPY_0633 [Helicobacter pylori B38]
 gi|254001200|emb|CAX29166.1| Conserved hypothetical protein [Helicobacter pylori B38]
          Length = 439

 Score =  267 bits (682), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 96/427 (22%), Positives = 183/427 (42%), Gaps = 28/427 (6%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++  + S GC  N+ DS  M        Y   N    AD+I++NTC   E A ++    +
Sbjct: 7   KQLCLISLGCSKNLVDSEVMLGKL--YNYTLTNDAKKADVILINTCGFIESAKQESIQTI 64

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
                 K          +++ +GC+++   +EI    P V++  G   Y ++  L+  A+
Sbjct: 65  LNAAKDKKE------GAILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDILI--AK 116

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
              +  +  +  E    R+            V A++ I EGC++ C+FC +P  +G   S
Sbjct: 117 KQNQFSEQVFLSEHYNARI-------ITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQS 169

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R L  ++ E   L   G  ++T + Q+ +++      G+K     L+ ++ + + L   R
Sbjct: 170 RELDSILKEVEDLALKGYKDMTFIAQDSSSFLYD--KGQKDGLIQLIKAIDKQQALKSAR 227

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
               +P   +  LI    D  +   Y  +P+Q  SD +LK M R  +   + +++D ++ 
Sbjct: 228 ILYLYPSSTTLELIGTIEDSLIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQ 287

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           V+    I S  IVG P E + +F      +D+  + +   F +S    T   ++ E+V +
Sbjct: 288 VKESF-IRSTIIVGHPEENEGEFEELSAFLDEFRFDRLNIFAFSAEENTHAYSL-EKVPK 345

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GR----SPWLQSVV 439
            +   R+  L K   + Q     A + + I+ L+E   KE       R    +P +   +
Sbjct: 346 KIINARIKALNKIALKHQNHSFKALLNKPIKALVE--NKEGAYFYKARDLRWAPEVDGEI 403

Query: 440 LNSKNHN 446
           L + +  
Sbjct: 404 LINDSEL 410


>gi|221194815|ref|ZP_03567872.1| RNA modification enzyme, MiaB family [Atopobium rimae ATCC 49626]
 gi|221185719|gb|EEE18109.1| RNA modification enzyme, MiaB family [Atopobium rimae ATCC 49626]
          Length = 426

 Score =  267 bits (682), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 94/400 (23%), Positives = 182/400 (45%), Gaps = 22/400 (5%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +   + + GC++N  +   M       G   V    DA  I++NTC +  +A  K    +
Sbjct: 7   KGVALLNLGCRVNRVELDLMASDLIQLGCAIVE-PKDAAAIIVNTCAVTAEAEAKTRKAI 65

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
                L ++        LVV  GCVA    +E+   +P V V           +++    
Sbjct: 66  RHAAALPHAP-------LVVATGCVASLFADELSSLAPNVVV-------ETRKDMVAEVV 111

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
             +     D   ++ +        G  R       + IQ+GC+  C++C+V   RG   S
Sbjct: 112 MQELGCALDGVTDEGYLLQKPTPTGRTRP-----GIKIQDGCNNRCSYCIVWKARGAARS 166

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
              ++V+ + ++  + G  E+ L G N+ ++  +  + +      LL  +     + R+R
Sbjct: 167 LDPAEVLRQIQEAQEAGAHEVVLTGINLGSYTSRFAE-KDVRLPGLLRLILRKTTIERVR 225

Query: 265 YTTSHPRDMSDCLIKAHG-DLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
            ++  P D+++ L+++       + P+LH+ +QSG D  L  M R + A  YR  +   R
Sbjct: 226 LSSLEPPDVNEALLESIAASHGRIAPFLHICLQSGCDETLHRMRRAYGAELYRSAVAAAR 285

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           +  P +A+ +D IVGFPGET+++F  +     ++ +++   F+YS R GTP ++   QV 
Sbjct: 286 TYLPQVALGTDLIVGFPGETEEEFEESYAFCKEMNFSKMHLFRYSKRPGTPAADAPNQVP 345

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK 423
             + A R   +++  ++ +     + VG    V++++ GK
Sbjct: 346 PQIMAARAHKMRELAKKMRYENAQSLVGSTDLVIVQRPGK 385


>gi|317014146|gb|ADU81582.1| hypothetical protein HPGAM_03795 [Helicobacter pylori Gambia94/24]
          Length = 439

 Score =  267 bits (682), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 96/428 (22%), Positives = 186/428 (43%), Gaps = 30/428 (7%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++  + S GC  N+ DS  M        Y   N    AD+I++NTC   E A ++    +
Sbjct: 7   KQLCLISLGCSKNLVDSEVMLGKL--YNYTLTNDAKKADVILINTCGFIESAKQESIQTI 64

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
                 K          +++ +GC+++   +EI    P V++  G   Y ++  L+  A+
Sbjct: 65  LNAAKDKKE------GAILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDILI--AK 116

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
              +  +  +  E    R+            V A++ I EGC++ C+FC +P  +G   S
Sbjct: 117 KQNQFSEQVFLSEHYNARI-------ITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQS 169

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R L  ++ E   L   G  ++T + Q+ +++      G+K     L+ ++ + + L   R
Sbjct: 170 RELDSILKEVEDLALKGYKDMTFIAQDSSSFLYD--KGQKDGLIQLIKAIDKQQALKSAR 227

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
               +P   +  LI A  D  V   Y  +P+Q  SD +LK M R  +   + ++++ ++ 
Sbjct: 228 ILYLYPSSTTLELIGAIEDSPVFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLNAMKQ 287

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           V+    I S  IVG P E + +F      +D+  + +   F +S    T   ++ E+V +
Sbjct: 288 VKESF-IRSTIIVGHPEENEGEFEELSAFLDEFQFDRLNIFAFSAEESTHAYSL-EKVPK 345

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV--GR----SPWLQSV 438
            +   R+  L K   + Q     A + + I+ L+E    ++G+     R    +P +   
Sbjct: 346 KIINARIKVLNKIALKHQNHSFKALLNKPIKALVE---HKEGEYFYKARDLRWAPEVDGE 402

Query: 439 VLNSKNHN 446
           +L + +  
Sbjct: 403 ILINDSAL 410


>gi|308062055|gb|ADO03943.1| hypothetical protein HPCU_03915 [Helicobacter pylori Cuz20]
          Length = 439

 Score =  267 bits (682), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 94/427 (22%), Positives = 185/427 (43%), Gaps = 28/427 (6%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++  + S GC  N+ DS  M        Y   N    AD+I++NTC   E A ++    +
Sbjct: 7   KQLCLISLGCSKNLVDSEVMLGKL--YNYTLTNDTKSADVILINTCGFIESAKQESIQTI 64

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
                 K          +++ +GC+++   +EI    P V++  G   Y ++  ++  A+
Sbjct: 65  LNAAKDKKK------GAILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMI--AK 116

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
              +  +  +  E    R+            V A++ I EGC++ C+FC +P  +G   S
Sbjct: 117 KQNQFSEQVFLSEHYNARI-------ITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQS 169

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R L  ++ E + L   G  ++T + Q+ +++      G+K     L+ ++ + + L   R
Sbjct: 170 RELDSILKEVQDLALKGYTDMTFIAQDSSSFLYD--KGQKDGLIQLIKAIDKQQALKSAR 227

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
               +P   +  LI A     +   Y  +P+Q  SD +LK M R  +   + ++++ ++ 
Sbjct: 228 ILYLYPSSTTLELIGAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLNAMKQ 287

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           V+    I S  IVG P E + +F      +D+  + +   F +S    T   ++ E+V +
Sbjct: 288 VKESF-IRSTIIVGHPEENEGEFEELSAFLDEFRFDRLNIFAFSAEENTHAYSL-EKVPK 345

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GR----SPWLQSVV 439
            +   R+  L K   + Q +   A + + I+ L+E   KE       R    +P +   +
Sbjct: 346 KIINARIKALNKIALKHQNNSFKALLNKPIKALVE--NKEGEYFYKARDLRWAPEVDGEI 403

Query: 440 LNSKNHN 446
           L + +  
Sbjct: 404 LINDSEL 410


>gi|109947260|ref|YP_664488.1| putative 2-methylthioadenine synthetase [Helicobacter acinonychis
           str. Sheeba]
 gi|123066258|sp|Q17XY7|RIMO_HELAH RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|109714481|emb|CAJ99489.1| putative 2-methylthioadenine synthetase [Helicobacter acinonychis
           str. Sheeba]
          Length = 438

 Score =  267 bits (682), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 96/427 (22%), Positives = 186/427 (43%), Gaps = 28/427 (6%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++  + S GC  N+ DS  M        Y   N    AD+I++NTC   E A ++    +
Sbjct: 6   KQLCLISLGCSKNLVDSEVMLGKL--YNYTLTNDAKSADVILINTCGFIESAKQESIQTI 63

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
                 K          L++ +GC+++   +EI    P V++  G   Y ++  L+  A+
Sbjct: 64  LNAAKDKKE------GTLLIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDILI--AK 115

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
              +  +  +  E    R+            V A++ I EGC++ C+FC +P  +G   S
Sbjct: 116 KQNQFSEQVFLSEHYNARV-------ITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLHS 168

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R L  ++ E   L+  G  ++T + Q+ +++      G+K     L+ ++ + + L   R
Sbjct: 169 RELDSILKEVEDLVLKGYKDMTFIAQDSSSFLYD--KGQKDGLIQLISAIDKQQALRSAR 226

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
               +P   +  LI A  +  +   Y  +P+Q  SD +LK M R  +   + ++++ ++ 
Sbjct: 227 ILYLYPSSTTLELIGAIENSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLNAMKQ 286

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           V+    I S  IVG P E + +F      +D+  + +   F +S    T   ++ E+V +
Sbjct: 287 VQESF-IRSTIIVGHPEENEGEFEELSAFLDEFQFDRLNIFAFSAEENTHAYSL-EKVPK 344

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GR----SPWLQSVV 439
            +   R+  L K   + Q +   A + + I+ L+E   KE       R    +P +   +
Sbjct: 345 KIINARIKALNKIALKHQHNSFKALLNKPIKALVE--NKEGEYFYKARDLRWAPEVDGEI 402

Query: 440 LNSKNHN 446
           L + +  
Sbjct: 403 LINDSEL 409


>gi|188527423|ref|YP_001910110.1| hypothetical protein HPSH_03170 [Helicobacter pylori Shi470]
 gi|238066306|sp|B2UT98|RIMO_HELPS RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|188143663|gb|ACD48080.1| hypothetical protein HPSH_03170 [Helicobacter pylori Shi470]
          Length = 439

 Score =  266 bits (680), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 95/427 (22%), Positives = 184/427 (43%), Gaps = 28/427 (6%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++  + S GC  N+ DS  M        Y   N    AD+I++NTC   E A ++    +
Sbjct: 7   KQLCLISLGCSKNLVDSEVMLGKL--YNYTLTNDTKSADVILINTCGFIESAKQESIQTI 64

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
                 K          +++ +GC+++   +EI    P V++  G   Y ++  ++  A+
Sbjct: 65  LNAAKDKKK------GAILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMI--AK 116

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
              +  +  +  E    R+            V A++ I EGC++ C+FC +P  +G   S
Sbjct: 117 KQNQFSEQVFLSEHYNARI-------ITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQS 169

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R L  ++ EA  L   G  ++T + Q+ +++      G+K     L+ ++ + + L   R
Sbjct: 170 RELDSILKEAENLALKGYTDMTFIAQDSSSFLYD--KGQKDGLIQLISAIDKQQALKSAR 227

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
               +P   +  LI       +   Y  +P+Q  SD +LK M R  +   + +++D ++ 
Sbjct: 228 ILYLYPSSTTLELISTIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQ 287

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           V+    I S  IVG P E + +F      +D+  + +   F +S    T   ++ E+V +
Sbjct: 288 VKESF-IRSTIIVGHPEENEGEFEELSAFLDEFRFDRLNIFAFSAEENTHAYSL-EKVPK 345

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GR----SPWLQSVV 439
            +   R+  L K   + Q +   A + + I+ L+E   KE       R    +P +   +
Sbjct: 346 KIINARIKALNKIALKHQNNSFKALLNKPIKALVE--NKEGEYFYKARDLRWAPEVDGEI 403

Query: 440 LNSKNHN 446
           L + +  
Sbjct: 404 LINDSEL 410


>gi|308063481|gb|ADO05368.1| hypothetical protein HPSAT_03125 [Helicobacter pylori Sat464]
          Length = 439

 Score =  266 bits (680), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 95/427 (22%), Positives = 185/427 (43%), Gaps = 28/427 (6%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++  + S GC  N+ DS  M        Y   N    AD+I++NTC   E A ++    +
Sbjct: 7   KQLCLISLGCSKNLVDSEVMLGKL--YNYTLTNDTKSADVILINTCGFIESAKQESIQTI 64

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
                 K          +++ +GC+++   +EI    P V++  G   Y ++  ++  A+
Sbjct: 65  LNAAKDKK------RGAILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMI--AK 116

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
              +  +  +  E    R+            V A++ I EGC++ C+FC +P  +G   S
Sbjct: 117 KQNQFSEQVFLSEHYNARI-------ITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQS 169

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R L  ++ E + L   G  ++T + Q+ +++      G+K     L+ ++ + + L   R
Sbjct: 170 RELDSILKEVQDLALKGYTDMTFIAQDSSSFLYD--KGQKDGLIQLISAIDKQQALKSAR 227

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
               +P   +  LI A     +   Y  +P+Q  SD +LK M R  +   + +++D ++ 
Sbjct: 228 ILYLYPSSTTLELIGAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQ 287

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           V+    I S  IVG P E + +F      +D+  + +   F +S    T   ++ E+V +
Sbjct: 288 VKESF-IRSTIIVGHPEENEGEFEELSAFLDEFRFDRLNIFAFSAEENTHAYSL-EKVPK 345

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GR----SPWLQSVV 439
            +   R+  L K   + Q +   A + + I+ L+E   KE       R    +P +   +
Sbjct: 346 KIINARIKALNKIALKHQNNSFKALLNKPIKALVE--NKEGEYFYKARDLRWAPEVDGEI 403

Query: 440 LNSKNHN 446
           L + +  
Sbjct: 404 LINDSEL 410


>gi|87199422|ref|YP_496679.1| MiaB-like tRNA modifying enzyme [Novosphingobium aromaticivorans
           DSM 12444]
 gi|87135103|gb|ABD25845.1| MiaB-like tRNA modifying enzyme [Novosphingobium aromaticivorans
           DSM 12444]
          Length = 398

 Score =  266 bits (679), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 107/441 (24%), Positives = 181/441 (41%), Gaps = 59/441 (13%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
             V S GC++N+ +S  +  +            D    +V+N+C +  +A  +    +  
Sbjct: 3   VEVISLGCRLNIAESEAIRGLIA----------DGPPTVVVNSCAVTAEAVRQSRRAV-- 50

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
                    +E  +  +VV GC A  E +        V+ VV                  
Sbjct: 51  -----RRLRRENPEARLVVTGCAATIERDAFAGMV-EVDAVVPNAA-------------- 90

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
                    +E              R+    AF+ +Q GCD  CTFC++P  RG  +S  
Sbjct: 91  --------KLEPSSWNAPTGARPLPRRAHTRAFIPVQNGCDHSCTFCIIPQGRGKSVSLP 142

Query: 207 LSQVVDEARKLIDN-------GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           +  V+    + I          V E+ L G +V +W G  L       + +   L     
Sbjct: 143 VVDVISAVERAIFALRPERHLTVHEVVLTGVDVTSW-GADLPSGPALGNLIAAILDAFPE 201

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           L RLR ++    ++   L         +MP++HL +QSG D +LK M RRH+  +  +++
Sbjct: 202 LPRLRLSSLDGVEIDPLLFDLITGEPRVMPHVHLSLQSGDDMVLKRMKRRHSRRDAIELV 261

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            R+++ RPDIA+ +D I GFP ET +  R  + +V + G      F YSPR GTP + M 
Sbjct: 262 QRMKARRPDIAVGADLIAGFPTETPEMHRNNLSIVRECGIVHGHVFPYSPRPGTPAALMP 321

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV 439
            QV+  V  ER   L+  +  ++  +  + VG+  +VL E   ++     G     +   
Sbjct: 322 -QVEPAVVRERAAELRAAVATERARWLASLVGKPAQVLAE---RDGTGHAGHFATYRV-- 375

Query: 440 LNSKNHNIGDIIKV---RITD 457
             +     G ++ V   +I +
Sbjct: 376 --TDGVTAGSLVMVTPTKIVE 394


>gi|156339127|ref|XP_001620089.1| hypothetical protein NEMVEDRAFT_v1g149213 [Nematostella vectensis]
 gi|156204445|gb|EDO27989.1| predicted protein [Nematostella vectensis]
          Length = 323

 Score =  266 bits (679), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 118/304 (38%), Positives = 176/304 (57%), Gaps = 20/304 (6%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F++SYGCQMN+ DS  +  +   QG+     ++DADL+++NTC IREKA + +   L
Sbjct: 27  KKLFIESYGCQMNMNDSEIVASILAQQGFNTTQHLEDADLVLVNTCSIREKAEQTIRKRL 86

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            +   +K    K    + V V GC+A+   E+ L    IV++VVGP  Y  LP LL+   
Sbjct: 87  QKYNAVKKKNTK----MKVGVLGCMAERLKEKFLEEEKIVDLVVGPDAYRDLPNLLQEID 142

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G+  V+   S ++ +  ++ V        GV+AF++I  GCD  CTFCVVP+TRG E S
Sbjct: 143 EGRDAVNVILSKDETYGDVAPVRLN---NNGVSAFVSITRGCDNMCTFCVVPFTRGRERS 199

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNA--WRGKGL--DGEKCT---------FSDLL 251
           R    +++E + + D    EITLLGQNV++  W G GL  D +K T         F+ LL
Sbjct: 200 RDPQSILEEIQSMADQNFKEITLLGQNVDSYLWYGGGLKKDFKKATEIAQATAVDFAQLL 259

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
              +     +R R++TS+P+DMS  +I        +  Y+HLPVQSGS+++LK+MNR+HT
Sbjct: 260 DMAATRFPKMRFRFSTSNPQDMSLDVIHTMAKHKNICKYIHLPVQSGSNKMLKAMNRQHT 319

Query: 312 AYEY 315
             EY
Sbjct: 320 REEY 323


>gi|291519254|emb|CBK74475.1| RNA modification enzyme, MiaB family [Butyrivibrio fibrisolvens
           16/4]
          Length = 382

 Score =  266 bits (679), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 108/379 (28%), Positives = 182/379 (48%), Gaps = 13/379 (3%)

Query: 90  LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149
           + +   K      VV AGC  Q  G+E+       ++++G      L E + +   G   
Sbjct: 1   MIHKCKKLNPTSCVVAAGCYVQNFGKEVADEL-GADIILGNNKKNELVEKIHQYFEGLDS 59

Query: 150 VD-TDYSVEDKFERLSIVDGGYNRK--RGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
            D       D  E     +  +  K      AF+ +Q+GC++FC++C++P+ RG   SR 
Sbjct: 60  SDGPILDWIDINEGNVSYENMHIEKDSEHTRAFVKVQDGCNQFCSYCIIPFARGRIRSRD 119

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
           +  VV+E   L  NG  E+ + G ++++  G G D      +DLL ++ +I G+ R+R  
Sbjct: 120 IEDVVEEVTGLATNGYKEVVITGIHLSS-YGNGTD---YNLADLLEAIEKIDGVERIRLG 175

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
           +  P+ +++   K    L  + P+ HL +QSG D +L  MNR++T  EY + ++ +R   
Sbjct: 176 SLEPQIVTEEFAKRVSALSKMCPHFHLSLQSGCDSVLVRMNRKYTIEEYTRGVEILRKYF 235

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
            + AI++D IVGFPGET+++F  T   V  I + +   F YS R GT  + M  Q+   V
Sbjct: 236 ENPAITTDIIVGFPGETEEEFNITASYVKDIAFYELHVFAYSKRKGTKAATMPGQLTNAV 295

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG--KLVGRSPWLQSVVLNSKN 444
           K ER   L     E   S+  + VG+ +++L E+     G    +G S       + +++
Sbjct: 296 KKERSAKLISIGNETTESYRMSFVGKELDILFEEKAVIDGKEYFIGFSREYIKCAILAED 355

Query: 445 HNIGDIIKVRITDVKISTL 463
               D   V I   K + L
Sbjct: 356 SK--DFTNV-ILKAKGTVL 371


>gi|258404436|ref|YP_003197178.1| RNA modification enzyme, MiaB family [Desulfohalobium retbaense DSM
           5692]
 gi|257796663|gb|ACV67600.1| RNA modification enzyme, MiaB family [Desulfohalobium retbaense DSM
           5692]
          Length = 431

 Score =  266 bits (679), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 115/390 (29%), Positives = 185/390 (47%), Gaps = 28/390 (7%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           RF + + GC++N Y+S  + + +  +GY   ++ +  + IV+N+C +   A +       
Sbjct: 5   RFALHTLGCKVNQYESQALREAWLQRGYREASTDEVPEWIVVNSCAVTSGAVQDT----- 59

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
             R L     +   +  +VV GC AQ   EE+    P V   V  Q    L         
Sbjct: 60  --RKLVRKLHRNHPEAAIVVTGCAAQVFTEEMAA-LPGVLRTVPQQAKADLC-------V 109

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G   +       D F    +     +R RG+   L +Q+GC   CT+C+VP+TRG  ++R
Sbjct: 110 GPDALHFACREADHFPEFPVT--ASSRARGL---LKVQDGCSHGCTYCIVPHTRGPAVTR 164

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS-----EIKGL 260
           S  + + EAR L   G+ E+++ G N+    G+ L      F D L  L      E  G 
Sbjct: 165 SPEKSLAEARHLFRGGLRELSVSGINLR-QYGRDL-TPPLDFWDFLAWLDANLATEWAGR 222

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR-HTAYEYRQII 319
            RLR ++  P +++D  +       ++ P+LHL +QSGS  IL+ M R  +     R  +
Sbjct: 223 ARLRLSSLEPSELTDKALDTLRRCRLVAPHLHLSLQSGSPEILRRMGRGHYHPDTIRTFV 282

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
           DR++ + P   + +DF++GFPGE D  F  T  LV  + +     F YSPR GTP +   
Sbjct: 283 DRLQEIWPHFGLGADFLLGFPGEDDAAFETTAALVRDLPFTYGHVFPYSPRPGTPAATFT 342

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDAC 409
           +QV E +K ER   L+  L +++ +F    
Sbjct: 343 DQVAEPIKRERCAILRSILEDKRTAFLQQQ 372


>gi|15790759|ref|NP_280583.1| hypothetical protein VNG1861C [Halobacterium sp. NRC-1]
 gi|169236502|ref|YP_001689702.1| hypothetical protein OE3617F [Halobacterium salinarum R1]
 gi|10581306|gb|AAG20063.1| conserved hypothetical protein [Halobacterium sp. NRC-1]
 gi|167727568|emb|CAP14356.1| conserved hypothetical protein [Halobacterium salinarum R1]
          Length = 432

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 113/449 (25%), Positives = 192/449 (42%), Gaps = 40/449 (8%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R+ +++YGC  N  +S  +E      G+ +V +  DAD+ +LNTC + EK      + L 
Sbjct: 3   RYHIETYGCTSNRGESRDIERRLRDAGHHKVETAADADVAILNTCTVVEKTE---RNMLR 59

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R + L +          ++V GC+A A+GE          V+     +  +PE +     
Sbjct: 60  RAKELADE------TADLIVTGCMALAQGEAFADADVDAQVL----HWDDVPEAV----- 104

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                          E  +          GV   L I  GC   C++C+     G   S 
Sbjct: 105 ------------TNGECPTTTPDAEPILDGVVGILPIARGCMSNCSYCITKQATGRVDSP 152

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            + + V++AR L+  G  EI + GQ+     G    GE+     L    +EI+G  R+R 
Sbjct: 153 PVEENVEKARALVHAGAKEIRITGQDTG-VYGWDT-GERKLPELLERIATEIEGEFRVRV 210

Query: 266 TTSHP---RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
             ++P     + + L     + D +  +LH PVQSGSD +L  M R+H   +YR I++  
Sbjct: 211 GMANPGGVHGIREELAAVFAEHDEIYNFLHAPVQSGSDDVLADMRRQHEVSQYRDIVETF 270

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
                +  +S+DFIVGFP E DDD  A+MDL+ +    +    ++S R GT  + +   +
Sbjct: 271 NDTLGEWTLSTDFIVGFPTEDDDDHEASMDLLRETRPEKINVTRFSKRPGTDAAELKG-L 329

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL-- 440
               K +R   + +   +     +++ VG   +VL+ + G     +       + V++  
Sbjct: 330 GGQTKKDRSKAMTELKMDVVGEAHESMVGTRRDVLVVEEGT-GDSVKCYDGAYRQVIVQN 388

Query: 441 -NSKNHNIGDIIKVRITDVKISTLYGELV 468
                   GD   V +T  +    + E V
Sbjct: 389 ATDHGLEPGDFATVEVTSHQTVYAFAEPV 417


>gi|210134936|ref|YP_002301375.1| 2-methylthioadenine synthetase [Helicobacter pylori P12]
 gi|238066300|sp|B6JLW7|RIMO_HELP2 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|210132904|gb|ACJ07895.1| 2-methylthioadenine synthetase [Helicobacter pylori P12]
          Length = 439

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 95/427 (22%), Positives = 183/427 (42%), Gaps = 28/427 (6%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++  + S GC  N+ DS  M        Y   N    AD+I++NTC   E A ++    +
Sbjct: 7   KQLCLISLGCSKNLVDSEVMLGKL--YNYTLTNDAKSADVILINTCGFIESAKQESIQTI 64

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
                 K          +++ +GC+++   +EI    P V++  G   Y ++  ++  A+
Sbjct: 65  LNAAKDKK------RGAILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMI--AK 116

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
              +  +  +  E    R+            V A++ I EGC++ C+FC +P  +G   S
Sbjct: 117 KQNQFSEQVFLSEHYNARI-------ITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQS 169

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R L+ ++ E   L   G  ++T + Q+ +++      G+K     L+ ++ + + L   R
Sbjct: 170 RELNSILKEVENLALKGYKDMTFIAQDSSSFLYD--KGQKDGLIQLISAIDKQQALKSAR 227

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
               +P   +  LI A     +   Y  +P+Q  SD +LK M R  +   + +++D ++ 
Sbjct: 228 ILYLYPSSTTLELIGAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQ 287

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           V+    I S  IVG P E + +F      +D+  + +   F +S    T   ++ E+V +
Sbjct: 288 VKESF-IRSTIIVGHPEENEGEFEELSAFLDEFQFDRLNIFAFSAEENTHAYSL-EKVPK 345

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GR----SPWLQSVV 439
                R+  L K   + Q     A + + I+ L+E   KE       R    +P +   +
Sbjct: 346 KTINARIKALNKIALKHQNHSFKALLNKPIKALVE--NKEGEYFYKARDLRWAPEVDGEI 403

Query: 440 LNSKNHN 446
           L + +  
Sbjct: 404 LINDSAL 410


>gi|118474280|ref|YP_892031.1| hypothetical protein CFF8240_0856 [Campylobacter fetus subsp. fetus
           82-40]
 gi|118413506|gb|ABK81926.1| conserved hypothetical protein [Campylobacter fetus subsp. fetus
           82-40]
          Length = 413

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 110/442 (24%), Positives = 207/442 (46%), Gaps = 30/442 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + + K++GC+ N+YD+  ++    S  Y+  N+ ++AD+IV+N+C +   A   V S++ 
Sbjct: 2   KIYFKTFGCRTNIYDTELIKSYIKS--YKITNNENEADIIVVNSCTVTNGADSGVRSYIN 59

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           +++              VV+ GC A ++GEE+ ++S  V  V+G     ++ E L     
Sbjct: 60  QVK---------NSGKKVVLTGCGAVSKGEELFKKSS-VFGVLGASNKSKIDEFLNSQNP 109

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
              + D ++  ++              +    AF+ IQEGC+  C++C++P  RG   S 
Sbjct: 110 FFELGDLNFIDKNIVSNY---------ENHTKAFIKIQEGCNFKCSYCIIPSVRGKSRSI 160

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
               +++EA+ L  NG  EI L G N+ +  G+    +  +   LL  L  IKG+ R+R 
Sbjct: 161 DEEVILNEAKILASNGYNEIVLTGTNIGS-YGEE---KSSSLGKLLQKLGSIKGIKRIRL 216

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
            +  P  + +   +   +   L  +LH+ +Q  S  +L  M RR+ A++  ++ + + ++
Sbjct: 217 GSIEPSQIDESFREILQES-WLEKHLHIALQHTSQTMLDIMRRRNRAFKDIELFNELSNL 275

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
               A+ SD+IV  PGE++  +   ++   K       +F +SPR GT  ++M   VD  
Sbjct: 276 --GFALGSDYIVAHPGESEKVWEEGLENFKKFPITHLHAFIFSPRSGTHSASMKIDVDGV 333

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445
           V   RL  L+         F        + +L+EK G + G   G   +   + + S   
Sbjct: 334 VAKNRLKILKNIAFVNNFEFRKRNK-TNLNILVEKQGSD-GLYDGFDQFYNKIKIKSDKD 391

Query: 446 NIGDIIKVRITDVKISTLYGEL 467
              + +++   +VK    Y E+
Sbjct: 392 ISKEWVELSNYEVKPDENYAEI 413


>gi|71029160|ref|XP_764223.1| hypothetical protein [Theileria parva strain Muguga]
 gi|68351177|gb|EAN31940.1| hypothetical protein, conserved [Theileria parva]
          Length = 750

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 100/447 (22%), Positives = 199/447 (44%), Gaps = 29/447 (6%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
            ++K++GC  N+ DS  M  +    GY   ++MD  DL+++N+C ++  +   + +++ +
Sbjct: 328 VYLKNFGCSHNISDSEYMLGIISESGYAITDTMDSCDLVIINSCTVKNPSEHGMINYINQ 387

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
              L            ++V GC+ Q++    +  +  +++ +G     ++  ++E    G
Sbjct: 388 GLKLGKK---------IIVTGCIPQSDKLHPIFNNNNISL-LGIMQIEKIVYVIENMLNG 437

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
            RVV  +         L  +D    RK  +   + I  GC   CTFC   ++RG+  S  
Sbjct: 438 NRVVMLEKKK------LPSLDLPKIRKNKLIEIIPISTGCLGSCTFCKTKHSRGVLNSYE 491

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
           +  ++D     I  GV EI L  +++ A+   G+D      + L   ++ +   + LR  
Sbjct: 492 IESILDRVESCISEGVKEIWLTSEDLGAY---GIDLGTNIITLLHSIIAVLPKDIMLRLG 548

Query: 267 TSHPRDMSDCLIKA--HGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
             +P  +   + +       + +  ++H+PVQS SD +L+ MNR +   ++  I+  I+ 
Sbjct: 549 MCNPPYIKKYISEVCEILRHENVFEFIHIPVQSCSDSVLEKMNREYKLEDFLHIVSVIKE 608

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             P+  I++D I GFP ET +D +AT+D +  +  +     +Y  R GT  S M E +D 
Sbjct: 609 KVPNCTIATDIICGFPTETHEDHQATVDTLRDLKLSVINISQYYSRKGTVSSGMKE-LDN 667

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL---N 441
           NVK  R   +           N   + +  +     +     +LVG + +   +++    
Sbjct: 668 NVKKNRSREVTNVFM--SYENNSKFLNEQFKAYF--NHINGDQLVGYNKYYIKLIVKNLK 723

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
                +G    V++ +     L  E++
Sbjct: 724 DPESYLGTTQHVKVINTHKWHLECEIL 750


>gi|207091912|ref|ZP_03239699.1| putative ATP-binding protein [Helicobacter pylori HPKX_438_AG0C1]
          Length = 291

 Score =  265 bits (677), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 104/290 (35%), Positives = 165/290 (56%), Gaps = 9/290 (3%)

Query: 185 GCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL-DGE 243
           GCDK C +C+VP+TRG EIS  +  ++ EA KL +NG  E+ LLGQNVN +  +   +  
Sbjct: 1   GCDKKCAYCIVPHTRGKEISIPMDLILKEAEKLANNGTKELMLLGQNVNNYGTRFSSEHA 60

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
           K  FSDLL  LSEI+G+ R+R+T+ HP  M+D  ++       +   +H+P+QSGS  +L
Sbjct: 61  KVDFSDLLDKLSEIQGIERIRFTSPHPLHMNDAFLERFAKNPKVCKSIHMPLQSGSSAVL 120

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           K M R ++   +   ++R++++ P++ IS+D IVGFP E+D DF  TM++++K+ +   +
Sbjct: 121 KMMRRGYSKEWFLNRVERLKALVPEVGISTDIIVGFPNESDKDFEDTMEVLEKVRFDTLY 180

Query: 364 SFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK 423
           SF YSPR  T      E+V   V + RL  LQ + +E         VG+   VL+E   +
Sbjct: 181 SFIYSPRPFTEAGAWKERVPLEVSSSRLERLQNRHKEILEEKAKLEVGKTHVVLVENRRE 240

Query: 424 EKGKLV---GRSPWLQSVVLN-SKNHNIGDIIKVRITDVKISTLYGELVV 469
              ++V   GRS   + + +   +  N G+++KV I         G L+ 
Sbjct: 241 MDNQIVGFEGRSDTGKFIEVTCKEKRNPGELVKVEIISHS----KGRLIA 286


>gi|326388653|ref|ZP_08210246.1| MiaB-like tRNA modifying enzyme [Novosphingobium nitrogenifigens
           DSM 19370]
 gi|326206904|gb|EGD57728.1| MiaB-like tRNA modifying enzyme [Novosphingobium nitrogenifigens
           DSM 19370]
          Length = 405

 Score =  265 bits (677), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 112/428 (26%), Positives = 178/428 (41%), Gaps = 45/428 (10%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V + GC++N+ +S  +  M  +         +    +V+N+C +  +A  +    +    
Sbjct: 7   VVTLGCRLNLAESDAIRAMLAAA-------PER--TVVVNSCAVTAEAVRQSRRAI---- 53

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
                  +   D  +VV GC A    + I      V+ VV                    
Sbjct: 54  ---RRLRRAHPDARLVVTGCAATITPD-IFSAMAEVDAVVANPDKLAPASW--------- 100

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
                    D+   +S         R   AF+ +Q GCD  CTFC++P  RG  +S  ++
Sbjct: 101 -------RTDEHAPVSESPSARLSDRHTRAFVPVQTGCDHACTFCIIPLGRGHSVSTPVA 153

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWR----GKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           +V+      +  GV EI L G +V  W      K   G       +   L+    L RLR
Sbjct: 154 RVLRAIEAHLALGVNEIVLTGVDVTGWGADLAPKPEGGMPRLGDLVGAILAHFPDLPRLR 213

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
            ++    ++ D L +       +MP++HL +QSG D +LK M RRH+  +   +I+R+R 
Sbjct: 214 LSSLDGVEIDDRLFEILTGEPRVMPHIHLSLQSGDDMVLKRMKRRHSRGQALFLIERLRL 273

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
            RPDIAI +D I GFP ET+      + L+   G      F YSPR GTP + M   VD 
Sbjct: 274 YRPDIAIGADIIAGFPTETEAMHANNLSLIAAAGIVHGHIFPYSPRPGTPATRMP-AVDP 332

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
               ER   L++ +  ++ ++    +G+  EVL E+ G       G SP      L    
Sbjct: 333 AQVRERAAQLREAVAAERAAWLHGLIGRPREVLAERDG------TGHSPEFAPYRLPPGT 386

Query: 445 HNIGDIIK 452
              G ++ 
Sbjct: 387 A-PGALVT 393


>gi|261838033|gb|ACX97799.1| hypothetical protein KHP_0592 [Helicobacter pylori 51]
          Length = 439

 Score =  264 bits (676), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 95/427 (22%), Positives = 184/427 (43%), Gaps = 28/427 (6%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++  + S GC  N+ DS  M        Y   N    AD+I++NTC   E A ++    +
Sbjct: 7   KQLCLISLGCSKNLVDSEVMLGKL--YNYTLTNDTKSADVILINTCGFIESAKQESIQTI 64

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
                 K          +++ +GC+++   +EI    P V++  G   Y ++  ++  A+
Sbjct: 65  LNAAKDKKK------GAILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMI--AK 116

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
              +  +  +  E    R+            V A++ I EGC++ C+FC +P  +G   S
Sbjct: 117 KQNQFSEQVFLSEHYNARI-------ITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQS 169

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R L  ++ E   L   G  ++T + Q+ +++      G+K     L+ ++ + + L   R
Sbjct: 170 RELDSILKEVEDLALKGYTDMTFIAQDSSSFLYD--KGQKDGLIQLISAIDKQQALKSGR 227

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
               +P   +  LI A     +   Y  +P+Q  SD +LK M R  +   + +++D ++ 
Sbjct: 228 ILYLYPSSTTLELIGAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQ 287

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           V+    I S  IVG P E + +F      +D+  + +   F +S    T   ++ E+V +
Sbjct: 288 VKESF-IRSTIIVGHPEENEGEFEELSAFLDEFRFDRLNIFAFSAEENTHAYSL-EKVSK 345

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GR----SPWLQSVV 439
            +   R+  L K   + Q +   A + + I+ L+E   KE       R    +P +   +
Sbjct: 346 KIINARIKALNKIALKHQNNSFKALLNKPIKALVE--NKESEYFYKARDLRWAPEVDGEI 403

Query: 440 LNSKNHN 446
           L + +  
Sbjct: 404 LINDSEL 410


>gi|289582599|ref|YP_003481065.1| MiaB-like tRNA modifying enzyme [Natrialba magadii ATCC 43099]
 gi|289532152|gb|ADD06503.1| MiaB-like tRNA modifying enzyme [Natrialba magadii ATCC 43099]
          Length = 417

 Score =  264 bits (675), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 122/449 (27%), Positives = 192/449 (42%), Gaps = 40/449 (8%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R+ +++YGC  N  +S  +E      G+ RV+  D+AD+ +LNTC + EK      + L 
Sbjct: 3   RYHIETYGCTSNRGESREIERRLRDAGHYRVDGPDEADVAILNTCTVVEKTE---RNMLR 59

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R   L            + + GC+A A+GEE  +    V+            E+ E    
Sbjct: 60  RAEEL------STETADLFITGCMALAQGEEFAQAD--VD-----GQVLHWDEVPEAVTN 106

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G              E  +          GV   L I  GC   C++C+     G   S 
Sbjct: 107 G--------------ECPTTTPDAEPILDGVVGILPIARGCMSDCSYCITKKATGKIDSP 152

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           S+ + V++AR LI  G  EI + GQ+   +   G D  +     LL  +  I+G  R+R 
Sbjct: 153 SIEENVEKARALIHAGAKEIRITGQDTGVY---GWDEGERKLHRLLEEICAIEGDFRVRV 209

Query: 266 TTSHP---RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
             ++P     + + L       D L  +LH PVQSGSD +L  M R+H   EY ++I+  
Sbjct: 210 GMANPKGVHGIREELADVFAANDELYDFLHAPVQSGSDDVLGDMRRQHQVSEYLEVIETF 269

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
             V     +S+DFIVGFP ETD D   +M L+ +    +    ++S R GT  + M   +
Sbjct: 270 DDVLEYWTLSTDFIVGFPTETDHDHEQSMALLRETRPEKINVTRFSKRPGTDAAEMKG-L 328

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIE-VLIEKHGKEKGKLVGRSPWLQSVVLN 441
              VK +R   +    RE         VG+  E VL+ + G         + + Q +V N
Sbjct: 329 GGQVKKDRSKEMSAAKRELVGEAYAEMVGETREDVLVVEQGTADSVKCRDAAYRQIIVQN 388

Query: 442 SKNH--NIGDIIKVRITDVKISTLYGELV 468
           +  +    GD + + +T  +    +G  V
Sbjct: 389 ASEYGLEPGDFVDLEVTAHETMYAFGTPV 417


>gi|223038823|ref|ZP_03609115.1| 2-methylthioadenine synthetase [Campylobacter rectus RM3267]
 gi|222879796|gb|EEF14885.1| 2-methylthioadenine synthetase [Campylobacter rectus RM3267]
          Length = 420

 Score =  264 bits (675), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 91/391 (23%), Positives = 172/391 (43%), Gaps = 22/391 (5%)

Query: 40  DSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGG 99
           DS  M     +  YE    +  AD+I++NTC     A E+    +  +   +        
Sbjct: 2   DSEIMLGRLQN--YEITPEVARADVIIVNTCGFINSAKEESIRAILDMHEARKK------ 53

Query: 100 DLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDK 159
             L+VV GC+ Q   EE+++  P V++  G   Y ++ E++ + +           +   
Sbjct: 54  GSLLVVTGCLMQRYREELMKELPEVDLFTGVGDYDKIDEIILKKQN----------LFSP 103

Query: 160 FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLID 219
              L   +          A++ I EGC++ C+FC +P  +G   SRSL  +V E +KL+ 
Sbjct: 104 DTYLQANEERVITGSNYHAYIKISEGCNQKCSFCAIPTFKGKLKSRSLENIVGEVQKLVK 163

Query: 220 NGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIK 279
            G  + + L Q+ +++       +      L+ ++ +I+G+   R    +P   S+ LI+
Sbjct: 164 KGYYDFSFLSQDSSSYMRDHAVSDG--LISLIDAVEKIEGVKTARILYLYPSTTSNALIE 221

Query: 280 AHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGF 339
                 V   Y  +P+Q  SD++LK M R   A   +++++ ++   P+  + +  IVG 
Sbjct: 222 RIIASPVFANYFDMPIQHASDKMLKIMRRGSGAARIKELLNLMKKA-PNAFLRTGVIVGH 280

Query: 340 PGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLR 399
           PGE++ +F      + +  + +  +F YS    T    M EQV   + ++RL  ++K  R
Sbjct: 281 PGESEAEFDELCAFLQEFKFDRVSAFAYSKEEDTLSYEM-EQVPAKIISKRLSKIEKITR 339

Query: 400 EQQVSFNDACVGQIIEVLIEKHGKEKGKLVG 430
               +     +G+   V +E    E      
Sbjct: 340 AAIEASFARELGKKFIVSLEGESSEGEMFYA 370


>gi|167379627|ref|XP_001735214.1| radical sam proteins [Entamoeba dispar SAW760]
 gi|165902883|gb|EDR28592.1| radical sam proteins, putative [Entamoeba dispar SAW760]
          Length = 438

 Score =  264 bits (675), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 95/454 (20%), Positives = 195/454 (42%), Gaps = 38/454 (8%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYER----VNSMDDADLIVLNTCHIREKAAEKVY 81
                +YGC  NV DS  M+    + GY+              +V+N+C ++  + + + 
Sbjct: 9   TIKFLTYGCSHNVSDSEVMQKDLINAGYKIDSSETPISSKYKAVVINSCTVKNPSQQAIE 68

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
               +             ++ +V+AGCV QA+ +           +VG    +++ E +E
Sbjct: 69  VVQKKCEEA---------NVPLVIAGCVPQADPKACQCSKKC--SIVGVDQLHKITEAVE 117

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           +A   +     +       +        + R   +   +    GC+  C++C   + RG 
Sbjct: 118 KATHNEGQSYLERGALVNIDE-------HVRSNPLIDVIVTCTGCENACSYCKTKHARGG 170

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK--- 258
             S  +  +V   +  ID GV EI L G+++ A  G  ++       + +  + E K   
Sbjct: 171 LRSYPIEDLVKRVQHSIDEGVKEIRLTGEDIGA-YGLDINETFPHMLECICEVVEGKAML 229

Query: 259 --GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
             G+V   Y   + +++ + L++          +LH+P+QSGS  +L++M R++T  E+ 
Sbjct: 230 RIGMVNPPYIIKYFKEIVNILLR-----PCCFKFLHIPIQSGSSSVLEAMKRKYTREEFD 284

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
            + +R+R   P I+I++D I GFP ETD+D + T++ + K  +      +   R GTP +
Sbjct: 285 DVCNRLRISVPGISIATDIICGFPTETDEDHKKTLECIQKHQFPIVNISQMYIRPGTPAA 344

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQ 436
            M +Q++  +  +R   + +             +G+   V I +   +     G +    
Sbjct: 345 KM-KQINSKIVKQRSREVTEIFD--SYLPYTNLIGKEYIVWINEMAHDGINYAGHNISFV 401

Query: 437 SVVLN--SKNHNIGDIIKVRITDVKISTLYGELV 468
            V++    K + +G  ++V+I +     +  E++
Sbjct: 402 QVIVPYYEKENLLGKSVRVKIIEAGKFFVRSEII 435


>gi|219853312|ref|YP_002467744.1| MiaB-like tRNA modifying enzyme [Methanosphaerula palustris E1-9c]
 gi|219547571|gb|ACL18021.1| MiaB-like tRNA modifying enzyme [Methanosphaerula palustris E1-9c]
          Length = 420

 Score =  264 bits (674), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 113/451 (25%), Positives = 205/451 (45%), Gaps = 53/451 (11%)

Query: 21  CIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKV 80
            +V +  +++ YGC  N  D+L + ++  +QG   V + ++AD +VLNTC +        
Sbjct: 20  SLVGKDVYLEEYGCTFNHADTLALVEVLKAQGCTIVPTPEEADAVVLNTCTVIGPTE--- 76

Query: 81  YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRS-PIVNVVVGPQTYYRLPEL 139
              L ++R              + + GC+   + + I     P V               
Sbjct: 77  RLMLRQMRRYSGHD--------LYLTGCMPAVQMDAICEVCSPKV--------------- 113

Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
                            E+     ++V+       GV   + + +GC   C++C+    R
Sbjct: 114 --------------IPPEEIRAAYTLVNTTVPSAIGV---VQVGQGCAGRCSYCITRNAR 156

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G   S     + +  ++ +DNG  E+ L GQ++++W   GLD  + +  DLL  ++   G
Sbjct: 157 GPLQSFQPPDIYNRVQQAVDNGAVEVQLTGQDLSSW---GLDLGR-SLPDLLRGITAFPG 212

Query: 260 LVRLRYTTSHPRDMSDCLIKAHG--DLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
             RLR    +P  +   L         D +  +LHLP+QSGSDR+L +MNR +TA + +Q
Sbjct: 213 DYRLRLGMMNPATVLPILDDLIAAYQSDRIFQFLHLPIQSGSDRVLAAMNRSYTASDVQQ 272

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
           I+   R V PD+ + +D IVGFPGETD DF  T+ ++  +   +    +YS R GTP ++
Sbjct: 273 ILRAFREVHPDLTLMTDLIVGFPGETDQDFEETLQMITALSPNKVNMTRYSGRPGTPAAD 332

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQS 437
           + + + ++VK +R   +   +       N   +G+ + V++ +  ++ G ++ R    Q+
Sbjct: 333 LPD-LQDSVKKDRSRAVNDHVTTLYHQKNSRWIGEEVGVVVTEQ-RKLGSVITRDERYQN 390

Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           +V+  +    G   +V+I         G LV
Sbjct: 391 IVIP-EPLPFGMKCRVQIEQDCTYYFIGSLV 420


>gi|260655525|ref|ZP_05861013.1| tRNA-I(6)A37 modification enzyme MiaB [Jonquetella anthropi E3_33
           E1]
 gi|260629973|gb|EEX48167.1| tRNA-I(6)A37 modification enzyme MiaB [Jonquetella anthropi E3_33
           E1]
          Length = 453

 Score =  264 bits (674), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 119/443 (26%), Positives = 207/443 (46%), Gaps = 31/443 (6%)

Query: 2   GLFIKLIGVAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDD 61
           GLF+ L G A                 ++  GC++N  ++  +   F S G    +    
Sbjct: 4   GLFVSLAGTA---------------VRIEFLGCRVNAAEAEALASAFLSAGASVASD-GP 47

Query: 62  ADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRS 121
            D+ ++ TC I   A  K    +GR+R       +     L+V +GC AQ   E + ++ 
Sbjct: 48  FDVGIVVTCSITAMADRKSRQLIGRLR-------RRCPRALLVASGCWAQGADEALAKKL 100

Query: 122 PIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLT 181
             ++++VG      +  L+ER    +    + Y++      +              AF+ 
Sbjct: 101 -GIDLLVGNGHKGEILALVERELSFRTSESSFYALRSPLAGVWDELDERTSVAHSRAFIK 159

Query: 182 IQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD 241
           +Q+GCD  C++C+VP  RG  +SR L + V EAR+L++ G  E+ L G ++  W  +   
Sbjct: 160 VQDGCDCRCSYCIVPSLRGPSVSRPLERTVAEARRLVEAGRTELVLTGVHLGQWGKESGR 219

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
           G     +DL+ ++  + GL RLR  +  P  + +  I A   L V  P+LHLP+QSG D 
Sbjct: 220 G----LADLIEAVGNVPGLKRLRLGSLEPFGIDERDIDAMASLTVFAPHLHLPLQSGDDG 275

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVR-PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
           +L+ M R  T+ ++ +++ ++R      + +S+D +V FPGETD+ F  T++++ +    
Sbjct: 276 VLRRMRRPGTSGQFLELVKKLRRALGDGLHVSTDVMVAFPGETDEAFARTLEVLQEARIG 335

Query: 361 QAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
           +   F +S R GTP +   +QVD      RL  L++  R          +G+ + V  E+
Sbjct: 336 RVHGFIFSIRPGTPAARFPDQVDRQTGKRRLEELERLGRLLLDEQAARSLGRSVVVYAER 395

Query: 421 HGKEKGKLVGRSPWLQSVVLNSK 443
            GK  G   G +     V L + 
Sbjct: 396 GGK--GAPSGYTGDYIEVHLPAS 416


>gi|260891278|ref|ZP_05902541.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Leptotrichia hofstadii
           F0254]
 gi|260858954|gb|EEX73454.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Leptotrichia hofstadii
           F0254]
          Length = 306

 Score =  264 bits (674), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 103/303 (33%), Positives = 172/303 (56%), Gaps = 8/303 (2%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + +R  + +YGCQMNV +S +M+ M  + GY+    +++ DL+ LNTC +RE AA KVY 
Sbjct: 1   MEKRATIITYGCQMNVNESAKMKQMLQTMGYQMTEDIENTDLVFLNTCTVREGAAVKVYG 60

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            LG ++ +K     + G +++ V GC+AQ   +E ++++P V++V+G Q   R+P++LER
Sbjct: 61  KLGDLKRIKEE---KDGKMIIGVTGCLAQEVRDEFIKKTPYVDLVLGNQNIGRIPDILER 117

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
              G+         ED+           +    + A ++I  GC+ +CTFC+VPY RG+E
Sbjct: 118 IESGEETHIVMVDDEDEL----PTRVDADFGDDIVASISITYGCNNYCTFCIVPYVRGME 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            S  L+++V +  +    G  EI  LGQNVN+  G      +  F++LL   + ++G   
Sbjct: 174 RSVPLNEIVSDVEQYTKKGYKEILFLGQNVNS-YGSDFANGQDNFAELLEESANVEGDFW 232

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           ++Y + HP+D SD +I        +   LHLP+QSGS +IL +MNR +T  E+  +  ++
Sbjct: 233 IKYVSPHPKDFSDEVIDTIARNPKIARMLHLPLQSGSTKILDAMNRGYTKEEFIALAKKL 292

Query: 323 RSV 325
           R  
Sbjct: 293 RRK 295


>gi|223944159|gb|ACN26163.1| unknown [Zea mays]
          Length = 517

 Score =  263 bits (673), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 103/376 (27%), Positives = 180/376 (47%), Gaps = 15/376 (3%)

Query: 95  IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDY 154
             +  +  +VVAGCV Q  G + L+    ++++ G Q   R+ E++E    G  V     
Sbjct: 7   KCKNANKPLVVAGCVPQ--GSQGLKELEGISII-GVQQIDRVVEVVEETLKGHEVRLLSR 63

Query: 155 SVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEA 214
                   L  +D    RK      L I  GC   CT+C   + RG   S ++  +VD  
Sbjct: 64  KT------LPSLDLPKVRKNKFIEILPINVGCLGACTYCKTKHARGHLGSYTIDSLVDRV 117

Query: 215 RKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMS 274
           + ++  GV EI L  ++  A  G+ +        + + +   +     LR   ++P  + 
Sbjct: 118 KTVVSEGVREIWLSSEDTGA-YGRDIGTNLPNLLNAIVAELPVDQSTMLRIGMTNPPFIL 176

Query: 275 DCL--IKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAIS 332
           + L  I A      +  +LH+PVQSGSD +LK+MNR +T  E+R+++D +  + P + I+
Sbjct: 177 EHLKEIAAVLCHPCVYSFLHVPVQSGSDSVLKAMNREYTVGEFRKVVDTLCELVPGMQIA 236

Query: 333 SDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLL 392
           +D I GFPGETD+DF  T++LV +  + Q    ++ PR GTP + M ++V  N   +R  
Sbjct: 237 TDIICGFPGETDEDFSETVNLVKEYQFPQVHISQFYPRPGTPAARM-KKVPSNEVKKRSR 295

Query: 393 CLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIK 452
            L      +  S      G++ ++ I +   +   LVG +     V++ + +  +G    
Sbjct: 296 ELTSVF--ESFSPYQGMEGKVEKIWITEIASDGVHLVGHTKGYIQVLVTAPDSMLGTSAD 353

Query: 453 VRITDVKISTLYGELV 468
            +IT V   +++G +V
Sbjct: 354 AKITSVGRWSVFGVVV 369


>gi|296127462|ref|YP_003634714.1| RNA modification enzyme, MiaB family [Brachyspira murdochii DSM
           12563]
 gi|296019278|gb|ADG72515.1| RNA modification enzyme, MiaB family [Brachyspira murdochii DSM
           12563]
          Length = 417

 Score =  263 bits (673), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 106/422 (25%), Positives = 196/422 (46%), Gaps = 30/422 (7%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
             + ++GC++N Y+S ++     + G      +D+A+ I +NTC +   + +K+ ++L +
Sbjct: 3   IHLHTFGCRLNQYESEKISYELKNMGANITE-LDNAEAIAINTCTVTNDSDKKLIAYLEK 61

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           + +L            V + GC    + ++       + ++                   
Sbjct: 62  LGDL--------SQKKVFLIGCYVSKKDKDSSIIKDNIILIPN--------------EKK 99

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           +   +  ++         I +  +  +    A+L IQ+GC+ FCT+C+V   RG   S  
Sbjct: 100 EEASEIIFNTMHNNSENKINNPIFFPQEQSRAYLKIQDGCEVFCTYCIVSRVRGSHRSVE 159

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL--VRLR 264
             ++ D  +   D G  EI L G N+ ++        + +F ++L  + E      +R+R
Sbjct: 160 PQKIFDAVKMANDYGYKEIVLTGLNLGSYNYN----NEISFYNILTQILEHSSKYGIRIR 215

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
            ++  P    D LI    + DVL P+ H+P+QSGS++ILK MNRR+T  +Y  + +++  
Sbjct: 216 LSSVEPLYFDDNLISLFKNDDVLCPHAHIPLQSGSNKILKLMNRRYTREDYLSVTEKLYK 275

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
              ++AISSD +VGFP E + DF  T DL +K  + +   F+YS R  TP S M  QV  
Sbjct: 276 TNSNMAISSDVMVGFPHEENTDFNDTYDLCEKSKFIKIHIFRYSNRENTPSSKMDSQVGY 335

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
             K +R   L     + +  +     G+ ++++IEK   +    +G S       L+S++
Sbjct: 336 RTKLKRAKILNTLNGKLKDLYYKNAEGRDLKIVIEKTLSDNN-YIGTSGEYLKCKLHSES 394

Query: 445 HN 446
             
Sbjct: 395 SL 396


>gi|86150946|ref|ZP_01069162.1| MiaB-like tRNA modifying enzyme [Campylobacter jejuni subsp. jejuni
           260.94]
 gi|315124495|ref|YP_004066499.1| MiaB-like tRNA modifying enzyme [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
 gi|85842116|gb|EAQ59362.1| MiaB-like tRNA modifying enzyme [Campylobacter jejuni subsp. jejuni
           260.94]
 gi|315018217|gb|ADT66310.1| MiaB-like tRNA modifying enzyme [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
          Length = 416

 Score =  263 bits (672), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 100/424 (23%), Positives = 195/424 (45%), Gaps = 33/424 (7%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + ++ F K++GC+ N+YD+  ++       YE +N  + A +IV+N+C +   A   + S
Sbjct: 1   MKEKVFFKTFGCRTNIYDTELLKSYVKD--YEIINDENKAQIIVVNSCTVTNGADSGIKS 58

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
           ++  ++            + V++ GC A ++G+E+L +   V  V+G     ++ E L  
Sbjct: 59  YVNTMQK---------KGIKVILTGCGAVSKGKELLDK-KQVFGVLGASNKDKINEFLGA 108

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
                 + + ++  +D              +    AF+ IQEGCD  C++C++P  RG  
Sbjct: 109 KTSFYELGNLNFIDKDIVCEY---------ENHTKAFVKIQEGCDFACSYCIIPSVRGKS 159

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            S     ++ +   L  NG  EI L G N+ ++  K       T   LL  + +I G+ R
Sbjct: 160 RSVDEKALLKQVEILGANGYSEIVLTGTNIGSYGLK----NGTTLGKLLQKMGQISGIKR 215

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R  +  P  + +  ++   D   L  +LH+ +Q  S+++L+ M RR       ++ + I
Sbjct: 216 IRLGSLEPAQIDESFLE-ILDETWLERHLHIALQHTSEKMLRIMRRRSHTDNDLKLFNTI 274

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
            S     A+ +DFIV  PGE+++ ++  +    +       +F +SPR  T  + M + +
Sbjct: 275 ASK--GYALGTDFIVAHPGESEEMWQEALRNFKEFPLTHIHAFIFSPRNNTHSATMKDVI 332

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQI-IEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           +  +  ERL  L+  + +    F      Q+ +EVL+E   ++ G   G   +   + + 
Sbjct: 333 NGTLAKERLNTLKSIVEKNNYEFRKK--NQVPLEVLVE--NQKDGFFEGYDQFFNKIKIK 388

Query: 442 SKNH 445
           S   
Sbjct: 389 SDKD 392


>gi|153951587|ref|YP_001397915.1| MiaB-like tRNA modifying enzyme [Campylobacter jejuni subsp. doylei
           269.97]
 gi|152939033|gb|ABS43774.1| MiaB-like tRNA modifying enzyme [Campylobacter jejuni subsp. doylei
           269.97]
          Length = 416

 Score =  263 bits (672), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 101/424 (23%), Positives = 195/424 (45%), Gaps = 33/424 (7%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + ++ F K++GC+ N+YD+  ++       YE +N  + A +IV+N+C +   A   + S
Sbjct: 1   MKEKVFFKTFGCRTNIYDTELLKSYVKD--YEIINDENKAQIIVVNSCTVTNGADSGIKS 58

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
           ++  ++            + V++ GC A ++G+E+L +   V  V+G     ++ E L  
Sbjct: 59  YVNTMKK---------KGIKVILTGCGAVSKGKELLDK-KQVFGVLGASNKDKINEFLGA 108

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
                 + + ++  +D              +    AF+ IQEGCD  C++C++P  RG  
Sbjct: 109 KTSFYELGNLNFIDKDIVCEY---------ENHTKAFVKIQEGCDFACSYCIIPSVRGKS 159

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            S     ++ +   L  NG  EI L G N+ ++  K       T   LL  + +I G+ R
Sbjct: 160 RSVDEKALLKQVEILGANGYSEIVLTGTNIGSYGLK----NGTTLGKLLQKMGQISGIKR 215

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R  +  P  + +  ++   D   L  +LH+ +Q  S+++L+ M RR       ++ + I
Sbjct: 216 IRLGSLEPAQLDESFLE-ILDETWLERHLHIALQHTSEKMLRIMRRRSHTDNDLKLFNTI 274

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
            S     A+ +DFIV  PGE+++ ++  +    +       +F +SPR  T  + M + +
Sbjct: 275 ASK--GYALGTDFIVAHPGESEELWQEALKKFKEFPLTHIHAFIFSPRNNTHSATMKDVI 332

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQI-IEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           +  +  ERL  L+  + +    F      Q+ +EVL+E   ++ G   G   +   V + 
Sbjct: 333 NGTLAKERLNTLKSIVEKNNYEFRKK--NQVSLEVLVE--NQKDGFFEGYDQFFNKVKIK 388

Query: 442 SKNH 445
           S   
Sbjct: 389 SDKD 392


>gi|221106620|ref|XP_002155994.1| PREDICTED: similar to predicted protein [Hydra magnipapillata]
          Length = 421

 Score =  263 bits (672), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 97/379 (25%), Positives = 173/379 (45%), Gaps = 23/379 (6%)

Query: 15  SQIVDQCIVPQR--FFVKSYGCQMNVYDSLRMEDMFFSQGYERV-NSMDDADLIVLNTCH 71
            + +   I+P     ++K++GC  N  DS  M  +  + GY+   +   +ADL +LN+C 
Sbjct: 58  ERPLADSIIPGTQCIYIKTWGCTHNNSDSEYMAGLLAAYGYKVTTSDPLNADLWLLNSCT 117

Query: 72  IREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ 131
           ++  A E   + + + + L            VV+AGCV Q +      +      +VG Q
Sbjct: 118 VKNPAEESFKNEIKKAQELNK---------YVVLAGCVPQGQPRGEFMKG---LSIVGVQ 165

Query: 132 TYYRLPELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190
              R+ E++E    G  V +     +  K    + ++    RK  +   + I  GC   C
Sbjct: 166 QIDRVVEVVEETLKGHSVRLFGKKKLNGKKIGGAPLNLPKIRKNPLIEIIAINTGCLNQC 225

Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDL 250
           T+C   + RG   S    ++V   ++  + GV EI L  ++  A  GK +     T  +L
Sbjct: 226 TYCKTKHARGELGSYPPEEIVARVKQSFEEGVVEIWLTSEDTGA-YGKDI---GVTLPEL 281

Query: 251 LYSLSEI---KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307
           L+ + E+    GL+R+  T           +    +   +  +LH+PVQSGS+ +L  M 
Sbjct: 282 LWQIIEVIPPGGLMRIGMTNPPYIKEYLDEMAKILNHPRVYSFLHIPVQSGSNNVLHDMK 341

Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           R +   +++  ++ ++   P + I++D I GFP ET +DF  +  LV +  +   F  ++
Sbjct: 342 REYRIEDFKNTVNFLKDRVPRLTIATDIICGFPTETLEDFADSCALVQEYQFPSLFINQF 401

Query: 368 SPRLGTPGSNMLEQVDENV 386
            PR GTP +NM     + V
Sbjct: 402 FPRPGTPAANMKRVPTDEV 420


>gi|266621755|ref|ZP_06114690.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Clostridium hathewayi DSM
           13479]
 gi|288866581|gb|EFC98879.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Clostridium hathewayi DSM
           13479]
          Length = 320

 Score =  263 bits (672), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 93/307 (30%), Positives = 162/307 (52%), Gaps = 6/307 (1%)

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           +     D S   ++E L+I    +       AF+ + +GC++FC++C++PYTRG   SR 
Sbjct: 1   EEETVIDISAAKEYEALTI----HKIADHTRAFIKVTDGCNQFCSYCIIPYTRGRVRSRR 56

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
           +  V  E  +L+  G  EI L G +++++     + E+ T  DL+  L E+ GL+R+R  
Sbjct: 57  MEDVRAEVERLVAGGYKEIVLTGIHLSSYGVDFREEERRTLLDLIVYLHEVDGLLRIRLG 116

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
           +  PR ++    +A   L  + P+ HL +QSG D  L  MNR +T  +Y +  D +R+  
Sbjct: 117 SLEPRIITKEFAEALAALPKVCPHFHLSLQSGCDATLARMNRHYTTADYLERCDILRAAF 176

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
            + AI++D IVGFPGET ++F+ T   +  + + +   FKYS R GT  + M +QV E V
Sbjct: 177 DNPAITTDVIVGFPGETGEEFQTTEAFLRTVHFYEMHVFKYSRREGTRAAVMPDQVPEPV 236

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK--LVGRSPWLQSVVLNSKN 444
           K ER   L    +   + +    +G++ EVL+E+  +  G+  ++G +       +  + 
Sbjct: 237 KTERSGVLLSLEKIMSLEYRKQFLGKMTEVLMEEEFEWDGRRYMIGYTKEYVKAAVPFEE 296

Query: 445 HNIGDII 451
              G ++
Sbjct: 297 GLKGAMV 303


>gi|317009256|gb|ADU79836.1| hypothetical protein HPIN_02965 [Helicobacter pylori India7]
          Length = 439

 Score =  263 bits (672), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 94/427 (22%), Positives = 187/427 (43%), Gaps = 28/427 (6%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++  + S GC  N+ DS  M        Y   N   +AD+I++NTC   E A ++    +
Sbjct: 7   KQLCLISLGCSKNLVDSEVMLGKL--YNYTLTNDAKNADVILINTCGFIESAKQESIQTI 64

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
                 K          +++ +GC+++   +EI    P V++  G   Y ++  ++  A+
Sbjct: 65  LNAAKDKKE------GAILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMI--AK 116

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
              +  +  +  E    R+            V A++ I EGC++ C+FC +P  +G   S
Sbjct: 117 KQNQFSEQVFLSEHYNARIITGSI-------VHAYVKISEGCNQKCSFCAIPSFKGKLQS 169

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R L+ ++ E + L   G  ++T + Q+ +++      G+K     L+ ++ + + L   R
Sbjct: 170 RELNSILKEVQDLALKGYKDMTFIAQDSSSFLYD--KGQKDGLIQLIRAIDKQQALKSAR 227

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
               +P   +  LI A     +   Y  +P+Q  SD +LK M R  +   + ++++ ++ 
Sbjct: 228 ILYLYPSSTTLELIGAIESSLIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLNAMKQ 287

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           V+    I S  IVG P E++ +F      +D+  + +   F +S    T   ++ E+V +
Sbjct: 288 VKESF-IRSTIIVGHPEESEGEFEELSAFLDEFRFDRLNIFAFSAEENTHAYSL-EKVPK 345

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GR----SPWLQSVV 439
            +   R+  L K   + Q     A + + I+ L+E   KE       R    +P +   +
Sbjct: 346 KIINARIKALNKIALKHQNHSFKALLNKPIKALVE--NKEGEYFYKARDLRWAPEVDGEI 403

Query: 440 LNSKNHN 446
           L + +  
Sbjct: 404 LINDSAL 410


>gi|324507132|gb|ADY43031.1| CDKAL1-like protein [Ascaris suum]
          Length = 535

 Score =  262 bits (671), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 102/422 (24%), Positives = 191/422 (45%), Gaps = 20/422 (4%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
             FV+++GC  N  DS  M  +    GY  +++ ++A L VLN+C ++  + +++ +   
Sbjct: 49  TIFVRTWGCSHNTSDSEYMTGLLSMAGYNIISTKENASLWVLNSCTVKTPSEDQLENE-- 106

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                   +  +     +VVAGCV+QA+      R   V++V G +   R+ E++E    
Sbjct: 107 -------VKKAKEAKKFIVVAGCVSQADPNAEFLR--GVSLV-GVKQIDRIVEVVEETLK 156

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G  V        ++   L        R+  +   L +  GC   CT+C     RG  +S 
Sbjct: 157 GNCVRLLSRKRPEQKLSLP-----KMRRNNLIEVLAVSSGCLNNCTYCKTKQARGDLVSY 211

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
              ++V++A +    G  EI L  +++ AW G+            +  +     ++RL  
Sbjct: 212 PPEELVEQAVRAFSEGCREIWLTSEDLGAW-GRDFGMVLPDLLKAMVDVIPEGCMMRLGM 270

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
           T           I    +   +  +LH+PVQSGSD +L+ MNR +++ ++ +++D +   
Sbjct: 271 TNPPYILDFLDEIAEILNHPRVYSFLHIPVQSGSDAVLRDMNREYSSADFCRVVDFMLQN 330

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P++ I++DFI  FP ET +DF  +M LV +  +   F  ++ PR GTP + + +++   
Sbjct: 331 VPNVYIATDFICAFPTETIEDFEESMQLVHRYRFPSVFINQFYPRKGTPAARL-KKITTT 389

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445
               R   +    R      ND  +G   +VL+ +   +K   V  +   +  +L   + 
Sbjct: 390 EARRRTAAMSSLFRSYTRYGNDR-LGMEYDVLVCEWATDKVHFVAHNKCYEHFLLPCDDV 448

Query: 446 NI 447
           +I
Sbjct: 449 SI 450


>gi|307636979|gb|ADN79429.1| MiaB family protein [Helicobacter pylori 908]
 gi|325995571|gb|ADZ50976.1| MiaB-like tRNA modifying enzyme [Helicobacter pylori 2018]
 gi|325997166|gb|ADZ49374.1| putative MiaB like protein [Helicobacter pylori 2017]
          Length = 418

 Score =  262 bits (671), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 109/438 (24%), Positives = 207/438 (47%), Gaps = 30/438 (6%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ + K++GC+ N++D+  M +      +       +AD+IV+N+C +   A   V S+ 
Sbjct: 2   KKVYFKTFGCRTNLFDTQVMGENLKD--FSATLEEQEADIIVINSCTVTNGADSAVRSYA 59

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            ++  L            V+  GC  + +G+E+  +   +  V G     ++  LL+   
Sbjct: 60  KKMARLNKE---------VLFTGCGVKTQGKELFEK-GFLKGVFGHDNKEKINALLQE-- 107

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
             K+    D ++E+K    ++V     + R   AF+ IQEGCD  C +C++P  RG   S
Sbjct: 108 --KKRFFIDDNLENKHLDTTMVSEFVGKTR---AFIKIQEGCDFDCNYCIIPSVRGRARS 162

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
               +++++   L   GV E+ L G NV +  GK         + L+  LS+I GL R+R
Sbjct: 163 FEERKILEQVGLLCSKGVQEVVLTGTNVGS-YGKD---RGSNIARLIKKLSQITGLKRIR 218

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
             +  P  ++D  ++  G+ D L  +LH+ +Q   D +L+ MNRR+     R+++++I S
Sbjct: 219 IGSLEPNQINDEFLELLGE-DFLEKHLHIALQHSHDFMLERMNRRNRTKSDRELLEKIAS 277

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
              + AI +DFIVG PGE++  F      ++ +       F YS R  TP S M + V  
Sbjct: 278 K--NFAIGTDFIVGHPGESESVFEKAFKNLESLPLTHIHPFIYSKRKDTPSSLMRDSVSL 335

Query: 385 NVKAERLLCLQKKLREQQVSFNDAC--VGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
            V  +RL  ++  +  +  +F      +   ++ L+E   ++ G+      +   + + S
Sbjct: 336 EVSKKRLNAIKDLIFHKNKAFRQLQLKLNTPLKALVE--AQKDGEFKALDQFFNPIKIKS 393

Query: 443 KNHNIGDIIKVRITDVKI 460
                   ++++  ++K 
Sbjct: 394 DKPLRASFLEIKEYEIKE 411


>gi|332298374|ref|YP_004440296.1| MiaB-like tRNA modifying enzyme [Treponema brennaborense DSM 12168]
 gi|332181477|gb|AEE17165.1| MiaB-like tRNA modifying enzyme [Treponema brennaborense DSM 12168]
          Length = 515

 Score =  262 bits (671), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 122/478 (25%), Positives = 201/478 (42%), Gaps = 50/478 (10%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDAD-------LIVLNTCHIREK 75
           VP     ++ GC++N  +S      F   G+        A        L V+NTC +  K
Sbjct: 23  VPPAVHFETLGCKLNQIESESAARYFSDAGFTVDMEPATAADAPGAAVLCVVNTCTVTGK 82

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG------ 129
           A +K    +  +       +++  +  V+V GC A+ +  ++      V V+ G      
Sbjct: 83  AEQKARRVIRLL-------LRKYENAAVLVTGCYAELDAPQLAAIDGRVCVLPGSLKDTL 135

Query: 130 PQTYYRLPELL-------ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTI 182
                R    +       E A F +R V  + S        +             A + I
Sbjct: 136 ADIPARFRSFIAADVTASECAAFLRRAVAAEKSAGGAVYTPTFRLATDTFFTHSRASIKI 195

Query: 183 QEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG 242
           Q+GC+  CT+C +   RG  +S   + V++  R +      E+ L G N++ +RG     
Sbjct: 196 QDGCNNACTYCRIHLARGKAVSLDAASVLERVRSIEARNQHEVVLTGVNLSQYRGSFGSF 255

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
                + LL  L +    +R R ++ +P  + D L +     + +MP+ HL VQSGSDRI
Sbjct: 256 F-LDIAGLLRFLLDNTERIRFRLSSLYPERVDDALCEVIA-HERIMPHFHLSVQSGSDRI 313

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           L  M R +T+ +    ++R+R+V+ +  I+ D I GFPGE+DDDF  TM+L     +A  
Sbjct: 314 LTLMRRPYTSADVAAAVERLRAVKRNPFIACDIIAGFPGESDDDFGQTMELCRSCRFAWI 373

Query: 363 FSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422
            +F +SPR GTP   M   V ++  A R+  L +     + ++  +  G ++  + E++ 
Sbjct: 374 HAFPFSPRPGTPAYAMKPVVPQSTAAHRVRRLTEFAIASKCAYISSYKGTVVSAITEQNR 433

Query: 423 KE-------------KGKLVGRSP-------WLQSVVLNSKNHNIGDIIKVRITDVKI 460
           K+              G    RSP           V L       G  I VRITD   
Sbjct: 434 KDRKAAFETTAADDAGGARTVRSPVTHAVTSNFIHVELPGS-FAPGSRIAVRITDALP 490


>gi|237752883|ref|ZP_04583363.1| 2-methylthioadenine synthetase [Helicobacter winghamensis ATCC
           BAA-430]
 gi|229375150|gb|EEO25241.1| 2-methylthioadenine synthetase [Helicobacter winghamensis ATCC
           BAA-430]
          Length = 366

 Score =  262 bits (671), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 100/386 (25%), Positives = 183/386 (47%), Gaps = 28/386 (7%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           +V Q+ + K++GC+ N++D+  M +      + +    +++D++V+N+C +   A   V 
Sbjct: 1   MVKQKVYFKTFGCRTNLFDTQVMINALKD--FAQTPYEEESDIVVVNSCTVTNGADSGVR 58

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           +++ R+         +     +   GC  Q +G+ +L R  +V  V G     ++  LL+
Sbjct: 59  NYINRL---------QNEGKRIFFTGCGVQTQGQALLDR-GLVRGVFGHSHKEKINTLLK 108

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           +        D+ + + D  E L   D   +      AF+ IQEGCD  C++C++P  RG 
Sbjct: 109 K--------DSSFFLSDDLEYLE-NDILSDFVGKSRAFIKIQEGCDFACSYCIIPSVRGK 159

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
             S S  +++ +   L   G  E  + G N+ +W GK       T   L+ SL EI  L 
Sbjct: 160 ARSFSQEKILKQVESLAQKGFSEFIITGTNMGSW-GKDFGLNIAT---LVESLCEIPLLK 215

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           RLR  +  P  +    +    +   +  +LH+ +Q  S ++LK MNR +T  +  ++ + 
Sbjct: 216 RLRIGSLEPSQIDTHFLSVL-ENPKIERHLHIALQHTSPKMLKLMNRYNTFEKDLELFNT 274

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +       A+ SDFIVG PGE  + +        K       SF YSPR  TP + + ++
Sbjct: 275 LSQK--GFALGSDFIVGHPGENKEVWEEAFLNFSKFPLTHLHSFIYSPRDNTPSALLKDR 332

Query: 382 VDENVKAERLLCLQKKLREQQVSFND 407
           ++ N+  ER   ++ K++E  ++F  
Sbjct: 333 INGNIAKERKKQIEGKVQENNLNFRK 358


>gi|307942735|ref|ZP_07658080.1| protein YleA [Roseibium sp. TrichSKD4]
 gi|307773531|gb|EFO32747.1| protein YleA [Roseibium sp. TrichSKD4]
          Length = 239

 Score =  262 bits (670), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 129/219 (58%), Positives = 163/219 (74%)

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
           +L  LSEI+GL RLRYTTSHPRDM D LI+AH DL  LMPYLHLPVQSGSD+ILKSMNR+
Sbjct: 1   MLRRLSEIEGLDRLRYTTSHPRDMDDELIEAHRDLKSLMPYLHLPVQSGSDKILKSMNRK 60

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369
           HT  EY ++IDRIR   PDIA+S DFIVGFPGE+D DF  TMDL+ ++ Y  AFSFKYS 
Sbjct: 61  HTRDEYFRLIDRIREAAPDIALSGDFIVGFPGESDADFEDTMDLIRRVEYGSAFSFKYSQ 120

Query: 370 RLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV 429
           R GTPG+ M +QV E+VK  RL  LQ  L +QQ +FN + +G + +VL+EK G+  G+LV
Sbjct: 121 RPGTPGATMEDQVPEDVKTARLSELQALLTQQQKAFNASRLGMVCDVLLEKKGRLPGQLV 180

Query: 430 GRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           G+SPWLQ V L++  + IG I  V I ++  ++L+G  +
Sbjct: 181 GKSPWLQPVQLDAPENLIGTIQAVEIIEIGSNSLFGRRI 219


>gi|157415263|ref|YP_001482519.1| MiaB-like tRNA modifying protein [Campylobacter jejuni subsp.
           jejuni 81116]
 gi|157386227|gb|ABV52542.1| hypothetical protein C8J_0943 [Campylobacter jejuni subsp. jejuni
           81116]
 gi|307747905|gb|ADN91175.1| MiaB-like tRNA modifying enzyme [Campylobacter jejuni subsp. jejuni
           M1]
 gi|315932134|gb|EFV11077.1| RNA modification enzyme, MiaB family protein [Campylobacter jejuni
           subsp. jejuni 327]
          Length = 416

 Score =  261 bits (668), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 99/424 (23%), Positives = 195/424 (45%), Gaps = 33/424 (7%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + ++ F K++GC+ N+YD+  ++       YE +N  + A +IV+N+C +   A   + S
Sbjct: 1   MKEKVFFKTFGCRTNIYDTELLKSYVKD--YEIINDENKAQIIVVNSCTVTNGADSGIKS 58

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
           ++  ++            + V++ GC A ++G+E+L +   V  V+G     ++ E L  
Sbjct: 59  YVNTMQK---------KGIKVILTGCGAVSKGKELLDK-KQVFGVLGASNKDKINEFLGA 108

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
                 + + ++  +D              +    AF+ IQEGCD  C++C++P  RG  
Sbjct: 109 KTSFYELGNLNFIDKDIVCEY---------ENHTKAFVKIQEGCDFACSYCIIPSVRGKS 159

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            S     ++ +   L  NG  EI L G N+ ++  K       +   LL  + +I G+ R
Sbjct: 160 RSVDEKALLKQVEILGANGYSEIVLTGTNIGSYGLK----NGTSLGKLLQKMGQISGIKR 215

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R  +  P  + +  ++   D   L  +LH+ +Q  S+++L+ M RR       ++ + I
Sbjct: 216 IRLGSLEPAQIDESFLE-ILDETWLERHLHIALQHTSEKMLRIMRRRSHTDNDLKLFNTI 274

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
            S     A+ +DFIV  PGE+++ ++  +    +       +F +SPR  T  + M + +
Sbjct: 275 ASK--GYALGTDFIVAHPGESEEVWQEALKKFKEFPLTHIHAFIFSPRNNTHSATMKDVI 332

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQI-IEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           +  +  ERL  L+  + +    F      Q+ +EVL+E   ++ G   G   +   + + 
Sbjct: 333 NGTLAKERLNILKSIVEKNNYEFRKK--NQVPLEVLVE--NQKDGFFEGYDQFFNKIKIK 388

Query: 442 SKNH 445
           S   
Sbjct: 389 SDKD 392


>gi|325971811|ref|YP_004248002.1| MiaB-like tRNA modifying enzyme [Spirochaeta sp. Buddy]
 gi|324027049|gb|ADY13808.1| MiaB-like tRNA modifying enzyme [Spirochaeta sp. Buddy]
          Length = 437

 Score =  261 bits (668), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 115/421 (27%), Positives = 186/421 (44%), Gaps = 19/421 (4%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
             V + GC++N  +S  + D F  +G+  V     ADL V+NTC +  KA +K    + +
Sbjct: 3   VCVYTLGCRLNQCESEAIADSFAKEGFTIVEEQVPADLYVVNTCTVTSKAEQKARRMIRK 62

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
              L             +  GC AQ   +E+   S  V VV   +  + L   L      
Sbjct: 63  FAEL----------APTLATGCYAQVNEQELKELSDNVIVVPLEKKAHLLKLALHLKACL 112

Query: 147 KRVVDTDYSVEDKFERLSIVDGG--YNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
              +D         +  + V      +      A+L IQ+GCD  C +C V   RG  +S
Sbjct: 113 VSGMDLKGGCLSFSDGKASVFDYDAASFSYHSRAYLKIQDGCDNSCAYCRVHIARGKAVS 172

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
               QV++ A  L  +G  EI L G N+  +  +G          L    +++   VR+R
Sbjct: 173 LQTEQVIERALALEASGFQEIMLTGVNLTMYDHQGEGLGGLLEKLL----AKLSSSVRIR 228

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
            ++  P  + D L+    D   + P+ H+PVQSGSD ILK ++R +T  E   I+DR+R 
Sbjct: 229 LSSMEPDHIDDRLLDVLTD-RRMQPHFHIPVQSGSDHILKHVDRHYTISELSVILDRLRK 287

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
            + D  +++D I G PGE ++DF AT   V    ++    F +SPR  T      ++V E
Sbjct: 288 AKNDPFLAADIITGLPGEREEDFAATRQFVIDQQFSFLHVFPFSPRPDTVLYKAKDRVTE 347

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
           +++ ER L L+    +   ++    VG+  EV++    ++ G     S     V + S  
Sbjct: 348 SLRDERALELRTISEQLHDAYRKRQVGKRTEVIL--QNRKGGYWYALSGNYLDVRVLSSP 405

Query: 445 H 445
            
Sbjct: 406 A 406


>gi|224436696|ref|ZP_03657700.1| hypothetical protein HcinC1_02049 [Helicobacter cinaedi CCUG 18818]
 gi|313143194|ref|ZP_07805387.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818]
 gi|313128225|gb|EFR45842.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818]
          Length = 427

 Score =  261 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 105/435 (24%), Positives = 189/435 (43%), Gaps = 38/435 (8%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ + K++GC+ N++D+  M+       +E V    +AD++++N+C +   A   V  +L
Sbjct: 5   KKVYFKTFGCRTNLFDTQVMKSNLGQ--FECVECESEADIVIVNSCTVTNGADAGVRGYL 62

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            ++R+L            V   GC     G+E+       N+  G   +     + E  +
Sbjct: 63  HKMRDLNKK---------VYFTGCGVGTRGQEVFSL----NLAYGVFAHSFKENIDELLQ 109

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
             +R    + S E     +     G +R     AFL IQEGCD  C++C++P  RG   S
Sbjct: 110 NKERFFHKEDSPEHIDSTIVSEFVGKSR-----AFLKIQEGCDFACSYCIIPSVRGKARS 164

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
               +++ +   L ++G+ E+ L G NV +  G+ LD      + L+  +  +  L RLR
Sbjct: 165 YPKDKILKQILTLAESGISEVVLTGTNVGS-YGRDLD---SNLAGLIREIYNLGVLRRLR 220

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
             +  P  +     +   +L ++  +LH+ +Q  SD +L+ MNR +      ++ +    
Sbjct: 221 IGSLEPSQIDSEFKEVL-ELPIMEKHLHIALQHTSDTMLEIMNRHNRVESDLELFNYFAQ 279

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
                 + SDFIVG PGE++  +   +             F YS R GTP S M   +  
Sbjct: 280 K--GFCLGSDFIVGHPGESESVWEKALANFKLFPLTHLHPFVYSKRDGTPSSTMKNDIKG 337

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQI-IEVLIEK-------HGKEKGKLVGRSPWLQ 436
           +V  +RL  L+  + +  V+F  A   +I + VL E           +     G   +  
Sbjct: 338 DVSKQRLHTLKDIVAQNNVAFRKAH--KIPLNVLCESKIESSNIESSDGFVYTGLDEFFN 395

Query: 437 SVVLNS-KNHNIGDI 450
            +   S K++ IG  
Sbjct: 396 RMRFESEKDNLIGQW 410


>gi|289675772|ref|ZP_06496662.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Pseudomonas
           syringae pv. syringae FF5]
          Length = 267

 Score =  261 bits (666), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 126/276 (45%), Positives = 180/276 (65%), Gaps = 11/276 (3%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++ +++++GCQMN YDS RM D+    Q  E     +DAD+I+LNTC IRE+A ++VY
Sbjct: 1   MAKKLYIETHGCQMNEYDSSRMVDLLGEHQALEVTARAEDADVILLNTCSIRERAQDRVY 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S LGR R LK +      ++++ V GCVA  EG  I  R+P V+VV GPQT +RLPE+++
Sbjct: 61  SQLGRWRELKLA----NPEMVIAVGGCVASQEGAAIRDRAPYVDVVFGPQTLHRLPEMID 116

Query: 142 RARFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
            AR  +   VD  +   +KF+ L        R  G +A++++ EGC K+CTFCVVPYTRG
Sbjct: 117 AARVTRLPQVDVSFPEIEKFDHLP-----EPRVDGPSAYVSVMEGCSKYCTFCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR    V+ E   L +NGV E+TLLGQNVN +RG   DG     +DL+  ++ + G+
Sbjct: 172 EEVSRPFDDVLSEVIHLAENGVREVTLLGQNVNGYRGTTHDGRVADLADLIRVVAAVDGI 231

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQ 296
            R+RYTTSHP + SD LI+AH ++  L+ +LHLPVQ
Sbjct: 232 DRIRYTTSHPLEFSDSLIQAHAEVPELVKHLHLPVQ 267


>gi|57237831|ref|YP_179079.1| MiaB-like tRNA modifying enzyme [Campylobacter jejuni RM1221]
 gi|88596372|ref|ZP_01099609.1| MiaB-like tRNA modifying enzyme [Campylobacter jejuni subsp. jejuni
           84-25]
 gi|148926084|ref|ZP_01809770.1| hypothetical protein Cj8486_1074 [Campylobacter jejuni subsp.
           jejuni CG8486]
 gi|218562622|ref|YP_002344401.1| putative MiaB-like tRNA modifying enzyme [Campylobacter jejuni
           subsp. jejuni NCTC 11168]
 gi|57166635|gb|AAW35414.1| MiaB-like tRNA modifying enzyme [Campylobacter jejuni RM1221]
 gi|88191213|gb|EAQ95185.1| MiaB-like tRNA modifying enzyme [Campylobacter jejuni subsp. jejuni
           84-25]
 gi|112360328|emb|CAL35124.1| putative MiaB-like tRNA modifying enzyme [Campylobacter jejuni
           subsp. jejuni NCTC 11168]
 gi|145845563|gb|EDK22655.1| hypothetical protein Cj8486_1074 [Campylobacter jejuni subsp.
           jejuni CG8486]
 gi|284926236|gb|ADC28588.1| MiaB-like tRNA modifying enzyme [Campylobacter jejuni subsp. jejuni
           IA3902]
 gi|315928365|gb|EFV07680.1| RNA modification enzyme, MiaB family protein [Campylobacter jejuni
           subsp. jejuni DFVF1099]
          Length = 416

 Score =  261 bits (666), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 100/424 (23%), Positives = 195/424 (45%), Gaps = 33/424 (7%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + ++ F K++GC+ N+YD+  ++       YE +N  + A +IV+N+C +   A   + S
Sbjct: 1   MKEKVFFKTFGCRTNIYDTELLKSYVKD--YEIINDENKAQIIVVNSCTVTNGADSGIKS 58

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
           ++  ++            + V++ GC A ++G+E+L +   V  V+G     ++ E L  
Sbjct: 59  YVNTMQK---------KGIKVILTGCGAVSKGKELLDK-KQVFGVLGASNKDKINEFLGA 108

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
                 + + ++  +D              +    AF+ IQEGCD  C++C++P  RG  
Sbjct: 109 KTSFYELGNLNFIDKDIVCEY---------ENHTKAFVKIQEGCDFACSYCIIPSVRGKS 159

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            S     ++ +   L  NG  EI L G N+ ++  K       T   LL  + +I G+ R
Sbjct: 160 RSVDEKALLKQVEILGANGYSEIVLTGTNIGSYGLK----NGTTLGKLLQKMGQILGIKR 215

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R  +  P  + +  ++   D   L  +LH+ +Q  S+++L+ M RR       ++ + I
Sbjct: 216 IRLGSLEPAQLDESFLE-ILDEAWLERHLHIALQHTSEKMLRIMRRRSHTDNDLKLFNTI 274

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
            S     A+ +DFIV  PGE+++ ++  +    +       +F +SPR  T  + M + +
Sbjct: 275 ASK--GYALGTDFIVAHPGESEELWQEALRNFKEFPLTHIHAFIFSPRNNTHSATMKDVI 332

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQI-IEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           +  +  ERL  L+  + +    F      Q+ +EVL+E   ++ G   G   +   + + 
Sbjct: 333 NGTLAKERLNTLKSIVEKNNYEFRKK--NQVSLEVLVE--NQKDGFFEGYDQFFNKIKIK 388

Query: 442 SKNH 445
           S   
Sbjct: 389 SDKD 392


>gi|303247427|ref|ZP_07333699.1| RNA modification enzyme, MiaB family [Desulfovibrio fructosovorans
           JJ]
 gi|302491123|gb|EFL51015.1| RNA modification enzyme, MiaB family [Desulfovibrio fructosovorans
           JJ]
          Length = 447

 Score =  261 bits (666), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 122/453 (26%), Positives = 200/453 (44%), Gaps = 37/453 (8%)

Query: 11  AHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC 70
           A M     D     +RF + + GC++N Y+S  + + +   G  RV+    AD+ VL TC
Sbjct: 3   AGMPQFPFDDS---KRFSLTTLGCKVNQYESRALAEAWEKAGLSRVDDPAAADVAVLVTC 59

Query: 71  HIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGP 130
            +  +A  +      ++    N + + G     VV GC A    +          V+V P
Sbjct: 60  AVTARAEAESRRLARQLARQINPQARPGARA--VVTGCAAVVAPDAFAALG----VIVVP 113

Query: 131 QTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190
                    L R  FG    D     +  F  L++   GY+R RG+   + IQ+GC   C
Sbjct: 114 DKAG-----LARRPFGPD--DAAPRADAVFPDLAVT--GYDRARGL---VKIQDGCSHGC 161

Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDL 250
           ++C+VP  RG  +SR    ++ EA +LI  G  EI L G N+    G+ L+    +F DL
Sbjct: 162 SYCIVPSGRGASVSRPFPDILAEAIRLITAGHREIGLTGINLG-HYGRDLE-APASFWDL 219

Query: 251 LYSLSEI-----KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
           L +L +         VRLR  +  P  +++  +       ++ P+LH+ +QS    +L +
Sbjct: 220 LAALDDALAPRYGDTVRLRLGSLDPAMLTEEGLSVLAAARLVCPHLHISLQSADPEVLVA 279

Query: 306 MNRRHT-AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
           M RR   A      +D IR   P   +  D + GFPGE+D  F  T D +  +    A  
Sbjct: 280 MGRRADDANRVSSFVDAIRIKWPTFGLGCDVLTGFPGESDAAFGRTRDFLSGLPLTYAHV 339

Query: 365 FKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI--EKHG 422
           F YS R GT  + M  Q+ + VK ER   L++    ++ +F +  + +   V++  E+H 
Sbjct: 340 FPYSRRPGTRAAAMAGQLSKAVKTERARELRELAAAKKAAFRER-LSREARVVVALERHD 398

Query: 423 KEKGKLVGRSPWLQSVVLNSK-NHNIGDIIKVR 454
                 VG          ++     +G +++ R
Sbjct: 399 P----AVGTCGQYVDCRFDAPVAAPLGALVRAR 427


>gi|283956404|ref|ZP_06373884.1| MiaB-like tRNA modifying enzyme [Campylobacter jejuni subsp. jejuni
           1336]
 gi|283792124|gb|EFC30913.1| MiaB-like tRNA modifying enzyme [Campylobacter jejuni subsp. jejuni
           1336]
          Length = 416

 Score =  260 bits (665), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 100/424 (23%), Positives = 195/424 (45%), Gaps = 33/424 (7%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + ++ F K++GC+ N+YD+  ++       YE +N  + A +IV+N+C +   A   + S
Sbjct: 1   MKEKVFFKTFGCRTNIYDTELLKSYVKD--YEIINDENKAQIIVVNSCTVTNGADSGIKS 58

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
           ++  ++            + V++ GC A ++G+E+L +   V  V+G     ++ E L  
Sbjct: 59  YVNTMQK---------KGIKVILTGCGAVSKGKELLDK-KQVFGVLGASNKDKINEFLGA 108

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
                 + + ++  +D              +    AF+ IQEGCD  C++C++P  RG  
Sbjct: 109 KTSFYELGNLNFIDKDIVCEY---------ENHTKAFVKIQEGCDFACSYCIIPSVRGKS 159

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            S     ++ +   L  NG  EI L G N+ ++  K       +   LL  + +I G+ R
Sbjct: 160 RSVDEKALLKQVEILGANGYSEIVLTGTNIGSYGLK----NGTSLGKLLRKMGQISGIKR 215

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R  +  P  + +  ++   D   L  +LH+ +Q  S+++L+ M RR       ++ + I
Sbjct: 216 IRLGSLEPAQIDESFLE-ILDETWLERHLHIALQHTSEKMLRIMRRRSHTDNDLKLFNTI 274

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
            S     A+ +DFIV  PGE+++ ++  +    +       +F +SPR  T  + M + +
Sbjct: 275 ASK--GYALGTDFIVAHPGESEELWQEALKKFKEFPLTHIHAFIFSPRNNTHSATMKDVI 332

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQI-IEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           +  +  ERL  L+  + +    F      Q+ +EVLIE   ++ G   G   +   + + 
Sbjct: 333 NGTLAKERLNTLKSIVEKNNYEFRKK--NQVSLEVLIE--NQKDGFFEGYDQFFNKIKIK 388

Query: 442 SKNH 445
           S   
Sbjct: 389 SDKD 392


>gi|317484640|ref|ZP_07943543.1| MiaB family RNA modification enzyme [Bilophila wadsworthia 3_1_6]
 gi|316924114|gb|EFV45297.1| MiaB family RNA modification enzyme [Bilophila wadsworthia 3_1_6]
          Length = 465

 Score =  260 bits (665), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 98/401 (24%), Positives = 178/401 (44%), Gaps = 26/401 (6%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
            P  F + ++GC++N Y+S  + + +        ++  +AD+I+LNTC +   A      
Sbjct: 4   APWTFCILTFGCKVNQYESQSVREAWQRMDGAETDAPAEADVILLNTCAVTANAVTDARQ 63

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            + R++       +E   + VV+AGC A+   +++    P V  VV      RL +    
Sbjct: 64  AVRRLQ-------REAPGVPVVIAGCAAEVARKQLAA-LPGVLRVVEQDHKSRLLDAPPL 115

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRK---------RGVTAFLTIQEGCDKFCTFC 193
             F +    +           +      +R          R     L +Q+GC   C +C
Sbjct: 116 VLFAEEAAGSATPFPSSPAEAAARAATRDRTFPPFHIDGFRRARPVLKVQDGCSHGCAYC 175

Query: 194 VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW--RGKGLDGEKCTFSDLL 251
           +VP TRG   SR     + E R+L++ G  EI + G N+  +  R +G        S L 
Sbjct: 176 IVPLTRGPARSRPPKDCLAEMRRLLEAGYREIMISGINLRQYAMRDEGCRDFWDLLSYLD 235

Query: 252 YSLS------EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
             L+            R R ++  P  +++  I    +  ++ P+LHL +QSGS  +LK+
Sbjct: 236 RELAPEWGSGARPDPARFRISSVEPAQLTERGIATLAETSMVCPHLHLSLQSGSADVLKA 295

Query: 306 MNRR-HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
           M R  +T       ++ +  + P   + +D ++GFPGET+     T+++V  +    A  
Sbjct: 296 MRRGHYTPEALLSAVEGVAKLWPRFGLGADILMGFPGETEAHVLETLEVVRSLPLTYAHV 355

Query: 365 FKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSF 405
           F YS R GT  + + +QV + V+ ER   ++  +  ++ +F
Sbjct: 356 FPYSARPGTVAAELPDQVGKAVRQERAARVRAVVEAKREAF 396


>gi|323509405|dbj|BAJ77595.1| cgd6_1520 [Cryptosporidium parvum]
          Length = 493

 Score =  260 bits (664), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 105/412 (25%), Positives = 185/412 (44%), Gaps = 35/412 (8%)

Query: 2   GLFIKLIGVAHMVSQIVDQCIVP--QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSM 59
           GL I+ +   ++     ++  VP   +  VK++GC  N  DS  M  +    GY  V  +
Sbjct: 80  GLIIRAVNNLNIQ---PEEGFVPGVAKIMVKNFGCNHNRSDSESMMGLLSEYGYTLVEEL 136

Query: 60  DDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILR 119
           D+ +LIV+N+C ++  + +   + +   ++ +           VVV GCV QA   +I  
Sbjct: 137 DECNLIVINSCTVKGPSQDSCQNLIELAKSKRK---------FVVVTGCVPQA---DINL 184

Query: 120 RSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDK--------FERLSIVDGGYN 171
                  ++G +  +R+ E++E    G  V+     +E K           L  +     
Sbjct: 185 NFLKDVSIIGVRNIHRIVEVVELTLQGNIVLLIPDKMEGKSGQLIDSLEISLPPLSLPKI 244

Query: 172 RKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQN 231
           R+      +TI  GC   CT+C   ++RG   S  +  ++    + ++ GV +  L  ++
Sbjct: 245 RRNPFVEIITISVGCLGNCTYCKTKHSRGDLGSYPVETIIQRINQSLNEGVKQFWLTSED 304

Query: 232 VNAWRGKGLDGEKCTFSDLLYSLSEI---KGLVRLRYT-TSHPRDMSDCLIKAHGDLDVL 287
           + A  GK +       S+LL  + +I     ++R+  T   +  D  D +I        +
Sbjct: 305 IGA-YGKDI---GTNLSELLREILKILPQDIMIRIGMTNPPYILDQIDEIIDIM-KHPNV 359

Query: 288 MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDF 347
             +LH+PVQSGS+RIL  M R +   E+  ++D I    P   I++D I GFPGE+D D 
Sbjct: 360 FEFLHIPVQSGSNRILDLMKRDYVIEEFSLLVDSILKEIPLATIATDIICGFPGESDQDH 419

Query: 348 RATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLR 399
             +++L++K  +      K+ PR GTP + M   V   V   R   +    +
Sbjct: 420 FQSVELINKYKFPVINISKFYPRPGTPAAKMKP-VPNGVSKSRSSEITNTFQ 470


>gi|284163849|ref|YP_003402128.1| MiaB-like tRNA modifying enzyme [Haloterrigena turkmenica DSM 5511]
 gi|284013504|gb|ADB59455.1| MiaB-like tRNA modifying enzyme [Haloterrigena turkmenica DSM 5511]
          Length = 417

 Score =  260 bits (664), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 119/449 (26%), Positives = 192/449 (42%), Gaps = 40/449 (8%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R+ +++YGC  N  +S  +E      G+ RV+  D+AD+ +LNTC + EK      + L 
Sbjct: 3   RYHIETYGCTSNRGESREIERRLRDAGHYRVDGPDEADVAILNTCTVVEKTE---RNMLR 59

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R   L            + + GC+A A+GEE       V+            E+ E    
Sbjct: 60  RAEELSEE------TADLFITGCMALAQGEEFRAAD--VD-----GQVLHWDEVPEAVTN 106

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G              E  +          GV   L I  GC   C++C+     G   S 
Sbjct: 107 G--------------ECPTTTPDAEPILDGVVGILPIARGCMSDCSYCITKQATGKIDSP 152

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            + + V++AR LI  G  EI + GQ+   +   G D  +     LL  +  I+G  R+R 
Sbjct: 153 PIEENVEKARALIHAGAKEIRITGQDTGVY---GWDEGERKLHRLLSEICAIEGDFRVRV 209

Query: 266 TTSHP---RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
             ++P     + + L     + + L  +LH PVQSGS+ +L  M R+H   EY ++++  
Sbjct: 210 GMANPKGVHGIREELAAVFAENEELYDFLHAPVQSGSNDVLGDMRRQHQVDEYVEVVETF 269

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
                   +S+DFIVGFP ETD D   +M L+ +    +    ++S R GT  + M   +
Sbjct: 270 DDALDYWTLSTDFIVGFPTETDRDHAQSMALLRETRPEKINVTRFSKRPGTDAAEMKG-L 328

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIE-VLIEKHGKEKGKLVGRSPWLQSVVLN 441
              VK ER   + +  RE         VG++ E  L+ + G         S + Q +V N
Sbjct: 329 GGTVKKERSKEMSEVKREIVREAYADMVGEVREDCLVVEEGTADSVKCRDSAYRQVIVQN 388

Query: 442 SKNHNI--GDIIKVRITDVKISTLYGELV 468
           +  + I  GD + + +   +    +GE V
Sbjct: 389 ASEYGIEPGDFVDLEVAAHETMYAFGEPV 417


>gi|86152771|ref|ZP_01070976.1| MiaB-like tRNA modifying enzyme [Campylobacter jejuni subsp. jejuni
           HB93-13]
 gi|121612428|ref|YP_001000685.1| MiaB-like tRNA modifying enzyme [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|167005607|ref|ZP_02271365.1| MiaB-like tRNA modifying enzyme [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|85843656|gb|EAQ60866.1| MiaB-like tRNA modifying enzyme [Campylobacter jejuni subsp. jejuni
           HB93-13]
 gi|87249241|gb|EAQ72202.1| MiaB-like tRNA modifying enzyme [Campylobacter jejuni subsp. jejuni
           81-176]
          Length = 416

 Score =  260 bits (664), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 99/424 (23%), Positives = 195/424 (45%), Gaps = 33/424 (7%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + ++ F K++GC+ N+YD+  ++       YE +N  + A +IV+N+C +   A   + S
Sbjct: 1   MKEKVFFKTFGCRTNIYDTELLKSYVKD--YEIINDENKAQIIVVNSCTVTNGADSGIKS 58

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
           ++  ++            + V++ GC A ++G+E+L +   V  V+G     ++ E L  
Sbjct: 59  YVNTMQK---------KGIKVILTGCGAVSKGKELLDK-KQVFGVLGASNKDKINEFLGA 108

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
                 + + ++  +D              +    AF+ IQEGCD  C++C++P  RG  
Sbjct: 109 KTSFYELGNLNFIDKDIVCEY---------ENHTKAFVKIQEGCDFACSYCIIPSVRGKS 159

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            S     ++ +   L  NG  EI L G N+ ++  K       +   LL  + +I G+ R
Sbjct: 160 RSVDEKALLKQVEILGANGYSEIVLTGTNIGSYGLK----NGTSLGKLLQKMGQISGIKR 215

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R  +  P  + +  ++   D   L  +LH+ +Q  S+++L+ M RR       ++ + I
Sbjct: 216 IRLGSLEPAQLDESFLE-ILDEAWLERHLHIALQHTSEKMLRIMRRRSHTDNDLKLFNTI 274

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
            S     A+ +DFIV  PGE+++ ++  +    +       +F +SPR  T  + M + +
Sbjct: 275 ASK--GYALGTDFIVAHPGESEELWQEALRNFKEFPLTHIHAFIFSPRNNTHSATMKDVI 332

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQI-IEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           +  +  ERL  L+  + +    F      Q+ +EVL+E   ++ G   G   +   + + 
Sbjct: 333 NGTLAKERLNTLKSIVEKNNYEFRKK--NQVSLEVLVE--NQKDGFFEGYDQFFNKIKIK 388

Query: 442 SKNH 445
           S   
Sbjct: 389 SNKD 392


>gi|315058449|gb|ADT72778.1| MiaB family protein [Campylobacter jejuni subsp. jejuni S3]
          Length = 416

 Score =  260 bits (664), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 100/424 (23%), Positives = 195/424 (45%), Gaps = 33/424 (7%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + ++ F K++GC+ N+YD+  ++       YE +N  + A +IV+N+C +   A   + S
Sbjct: 1   MKEKVFFKTFGCRTNIYDTELLKSYVKD--YEIINDENKAQIIVVNSCTVTNGADSGIKS 58

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
           ++  ++            + V++ GC A ++G+E+L +   V  V+G     ++ E L  
Sbjct: 59  YVNTMQK---------KGIKVILTGCGAVSKGKELLDK-KQVFGVLGASNKDKINEFLGA 108

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
                 + + ++  +D              +    AF+ IQEGCD  C++C++P  RG  
Sbjct: 109 KTSFYELGNLNFIDKDIVCEY---------ENHTKAFVKIQEGCDFACSYCIIPSVRGKS 159

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            S     ++ +   L  NG  EI L G N+ ++  K       T   LL  + +I G+ R
Sbjct: 160 RSVDEKALLKQVEILGANGYSEIVLTGTNIGSYGLK----NGTTLGKLLQKMGQILGIKR 215

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R  +  P  + +  ++   D   L  +LH+ +Q  S+++L+ M RR       ++ + I
Sbjct: 216 IRLGSLEPAQLDESFLE-ILDEAWLERHLHIALQHTSEKMLRIMRRRSHTDNDLKLFNTI 274

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
            S     A+ +DFIV  PGE+++ ++  +    +       +F +SPR  T  + M + +
Sbjct: 275 ASK--GYALGTDFIVAHPGESEELWQEALRNFKEFPLTHIHAFIFSPRNNTHSTTMKDVI 332

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQI-IEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           +  +  ERL  L+  + +    F      Q+ +EVL+E   ++ G   G   +   + + 
Sbjct: 333 NGTLAKERLNTLKSIVEKNNYEFRKK--NQVSLEVLVE--NQKDGFFEGYDQFFNKIKIK 388

Query: 442 SKNH 445
           S   
Sbjct: 389 SDKD 392


>gi|328955426|ref|YP_004372759.1| RNA modification enzyme, MiaB family [Coriobacterium glomerans PW2]
 gi|328455750|gb|AEB06944.1| RNA modification enzyme, MiaB family [Coriobacterium glomerans PW2]
          Length = 444

 Score =  260 bits (664), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 116/456 (25%), Positives = 200/456 (43%), Gaps = 44/456 (9%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R  V + GC++N  +S R+E      G+   +   +ADLI++NTC +  +A  K    + 
Sbjct: 10  RARVVNIGCRVNRVESDRIEAELARAGFAL-DETGEADLIIINTCAVTGEAEAKTRKAVR 68

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R        +       V+  GC        +   S  V              ++E  + 
Sbjct: 69  RA-------LVASPSARVIATGCSVNLNASALAALSDRV--------------IVEPVK- 106

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTA--FLTIQEGCDKFCTFCVVPYTRGIEI 203
            +RV                        RG  A   + +Q+GC++ C++C+V   RG E 
Sbjct: 107 -ERVCARAAQAAAVLGAAPCAPSAVGSVRGTRARVGVKVQDGCNRRCSYCIVWRARGPER 165

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           S  ++ V    R+L   GV E+ L G N+ AW G G  G     +DLL ++     + R+
Sbjct: 166 SVPVAAVTGRVRELAAAGVAEVVLTGVNLGAWAGSGRAGGTADIADLLEAVLGETDIARV 225

Query: 264 RYTTSHPRDMSDCLIKAHG-DLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           R ++  P D+S  L+         + PYLHLP+QSG    L+ M R ++A ++ ++  R 
Sbjct: 226 RLSSIEPMDVSGRLLAVMAHSSRRVAPYLHLPLQSGCSATLRRMGRPYSAQDFAELARRS 285

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R     +A+S D I GFPGETD++F A+ +L  +IG+++   F+YS R GTP +    ++
Sbjct: 286 RRSIAGVALSCDIIAGFPGETDEEFEASFELCARIGFSRMHVFRYSARPGTPAAAASGRI 345

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
           +  V A R   L+    E   +   + +G     ++E+  +       R      ++++ 
Sbjct: 346 EPAVAAGRARRLRALAAEMTDADARSRIGTREIAVVERARR------ARLGSYHPILIDG 399

Query: 443 K--NHNIGD--------IIKVRITDVKIS-TLYGEL 467
              +  +G         I  V I D+  +  L+G +
Sbjct: 400 PLFDQRLGGRRDAAPIAIADVDIVDIDENGMLHGRI 435


>gi|212702220|ref|ZP_03310348.1| hypothetical protein DESPIG_00231 [Desulfovibrio piger ATCC 29098]
 gi|212674346|gb|EEB34829.1| hypothetical protein DESPIG_00231 [Desulfovibrio piger ATCC 29098]
          Length = 448

 Score =  259 bits (663), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 98/391 (25%), Positives = 179/391 (45%), Gaps = 20/391 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +F+  ++GC++N Y++  + + + ++G    +    AD++ +N+C I  +          
Sbjct: 5   KFYFITFGCKVNQYETQSLREAWQARGGVECDDPAQADVVCVNSCAITARGERD------ 58

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
             RN      +      +++ GC A+    E  RR    + V   Q    LP+  +R   
Sbjct: 59  -ARNAVFRLRRAAPAARLILTGCAARLF--EDFRRHGHEDCV---QPDLILPQGDKRLLL 112

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                + + +   + +  S      +  R     L +Q+GC   CT+C+VP TRG  +SR
Sbjct: 113 AGPWTEGELAPTGEAQAPSYPPFAISGFRRARPVLKVQDGCQHRCTYCIVPLTRGRCLSR 172

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS-----EIKGL 260
               V+ EAR+L+  G  EI + G N+    G+  + +   F  LL  L      E  G 
Sbjct: 173 PPEDVIAEARRLLLAGHAEIMISGINLR-QYGRD-NADFGDFWSLLRRLDAALAPEFAGR 230

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR-HTAYEYRQII 319
            R R ++  P  + D  ++      +L P LH+ +Q  S  +L+ M R  +TA   ++ +
Sbjct: 231 GRFRISSLEPSQLDDEGVETLMACRMLCPQLHISLQHASQPVLRRMGRGHYTAAMLQRAV 290

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
           +R+ +  P + + +D I GFPGE ++D    +D V +  ++ A  F YS R GT      
Sbjct: 291 ERLHAHWPVMGLGADIIAGFPGEREEDVACLLDFVRETPFSYAHVFPYSRRPGTAADRFD 350

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACV 410
             + + VK ER   ++  + E++ +F  A +
Sbjct: 351 GHLPQQVKQERAARVRAAVEERRQAFCQAQL 381


>gi|31789378|gb|AAP58495.1| conserved hypothetical protein [uncultured Acidobacteria bacterium]
          Length = 414

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 121/435 (27%), Positives = 195/435 (44%), Gaps = 27/435 (6%)

Query: 36  MNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRI 95
           MN  DSLR+E+   ++G         ADL+V+NTC +   A +     + RI        
Sbjct: 1   MNQADSLRIEEGLRARG-GLDAPASGADLVVVNTCSVTAAADQGARQTIRRIA------- 52

Query: 96  KEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYS 155
           ++   + VVV GC A     ++     +V V+           L++ A     +    ++
Sbjct: 53  RDNPGVRVVVTGCYATRCESDVAALPNVVRVI----RNDAKDGLVDDAFAEAGLRAAPHA 108

Query: 156 VE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEA 214
            + D     +IV G   R       L +Q GC++ C +C++P TRG   S ++  VV E 
Sbjct: 109 QDGDGPCGSAIVPGLAGRT---AFTLRVQTGCEEACAYCIIPTTRGAGRSVAIGDVVREV 165

Query: 215 RKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMS 274
            ++  +G  EI L G ++ ++ G+ L+  + +  DLL +L      V  R ++  P D +
Sbjct: 166 ERIAASGFKEIALTGVHLGSF-GRDLESRR-SLIDLLRALDGCAADVVFRISSLEPMDCT 223

Query: 275 DCLIKAHGDLD-VLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
             ++           P+ HLP+Q  S+R+L  M R +T  EYR ++D + +  P  +I S
Sbjct: 224 KAIVDLVASSGGRFAPHFHLPLQHASNRMLALMRRPYTLGEYRGLVDGLAARLPHASIGS 283

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLC 393
           D IVGFPGE+DDDFRA +D +          F YS R GT  + M  +V+     ER L 
Sbjct: 284 DLIVGFPGESDDDFRANLDYLPASPLTHLHVFPYSDRPGTAATGMGGKVEGMTIRERGLR 343

Query: 394 LQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKV 453
           +++        F  + VG I          E G LV  +     V +          + V
Sbjct: 344 MREIGAALARRFRQSQVGTIRP----GLTLEDGTLVV-TDNYLKVRIP-PGLPRNQRVMV 397

Query: 454 RITDVKISTLYGELV 468
           R+    I +L  E+V
Sbjct: 398 RVEGDGIGSL--EVV 410


>gi|283954557|ref|ZP_06372076.1| hypothetical protein C414_000230057 [Campylobacter jejuni subsp.
           jejuni 414]
 gi|283793961|gb|EFC32711.1| hypothetical protein C414_000230057 [Campylobacter jejuni subsp.
           jejuni 414]
          Length = 417

 Score =  256 bits (655), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 100/424 (23%), Positives = 195/424 (45%), Gaps = 33/424 (7%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + ++ F K++GC+ N+YD+  ++       YE +N+ D A +IV+N+C +   A   + S
Sbjct: 1   MKEKVFFKTFGCRTNIYDTELLKSYVKD--YEIINNEDKAQIIVINSCTVTNGADSGIKS 58

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
           ++  ++            + V++ GC A ++G+E L +   V  V+G     ++ E L  
Sbjct: 59  YINTMQK---------KGIKVILTGCGAVSKGKEFLDK-KQVFGVLGASNKDKINEFLGA 108

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
                 + + ++  +D              +    AF+ IQEGCD  C++C++P  RG  
Sbjct: 109 KTSFYELGNLNFIDKDIVCEY---------ENHTKAFVKIQEGCDFACSYCIIPSVRGKS 159

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            S     ++ +   L  NG  EI L G N+ ++  K       T   LL  + +I G+ R
Sbjct: 160 RSVDEKTLLKQVEILGANGYSEIVLTGTNIGSYGLK----NGTTLGKLLQKMGQISGIKR 215

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R  +  P  + +  ++   D   L  +LH+ +Q  S+++L+ M RR       ++ + I
Sbjct: 216 IRLGSLEPAQIDESFLE-ILDEAWLERHLHIALQHTSEKMLRIMRRRSHTDNDLRLFNII 274

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
            S     A+ +DFIVG PGE+ + +   +    +       +F +SPR  T  + M + +
Sbjct: 275 ASK--GYALGTDFIVGHPGESVEIWEEALKNFKEFSLTHIHAFIFSPRNNTHSATMKDVI 332

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQI-IEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           +  +  ERL  L+  + +   +F      Q+ +E+L+E   +++    G   +   + + 
Sbjct: 333 NGTLAKERLNVLKSIVEKNNYNFRKKF--QVPLEILVE--NQKEDYFEGYDQFFNKIKIK 388

Query: 442 SKNH 445
           S   
Sbjct: 389 SDKD 392


>gi|88603600|ref|YP_503778.1| MiaB-like tRNA modifying enzyme [Methanospirillum hungatei JF-1]
 gi|88189062|gb|ABD42059.1| MiaB-like tRNA modifying enzyme [Methanospirillum hungatei JF-1]
          Length = 428

 Score =  255 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 105/444 (23%), Positives = 187/444 (42%), Gaps = 50/444 (11%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
             ++++GC  NV DS  +  +  + G   V+  + A+++++NTC +      K+   +  
Sbjct: 31  ICIRTFGCAYNVGDSDLLASVLTASGSVIVSDPELAEVMIINTCIVIASTERKMLKEISS 90

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
                        D  V V GC+  A  E +                +   +L+      
Sbjct: 91  Y-----------PDHEVYVTGCLPLALPESL--------------QEHTTVKLIHPDSIH 125

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           +      Y                  ++G  + + I  GC   C +C+    RG   S S
Sbjct: 126 RAAATVSYD-----------------QKGPVSVVQIGPGCVGSCRYCITRCARGSIRSNS 168

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
             Q+       +  G  EI L GQ+++A+   G D  + + + LL  +  +  + R+R  
Sbjct: 169 PHQIYSHIASCVRGGAVEIRLAGQDLSAY---GHDTGQWSLATLLEGIPALPDITRIRLG 225

Query: 267 TSHPRDMSDCLIKAHGDLDV--LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
             +P  +     +    ++      +LHLP+QSGSD +L  M R +T  + + IID  R+
Sbjct: 226 MMNPATLKPIAQRVARTMNNGPFFSFLHLPIQSGSDHVLDLMGRGYTVADVQNIIDIFRA 285

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
              DI I++D I GFPGETDDD   T+ L+ +I        +YS R GT G +   ++ +
Sbjct: 286 EMSDITIATDIITGFPGETDDDHEETVRLIRRIAPGMVNVTRYSWRPGT-GMSRDHELPD 344

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
            ++ ER   + ++        N+   G ++ V+  +  K  G ++ RS   + VV+  + 
Sbjct: 345 RIRKERSRAIIRESYTMFQKANEKMKGAVMRVIPTEQLK-PGSVMARSERYEGVVI-REE 402

Query: 445 HNIGDIIKVRITDVKISTLYGELV 468
             +G    V IT      L GE++
Sbjct: 403 CQLGIPCMVTITGSTPHYLIGEVI 426


>gi|224826493|ref|ZP_03699594.1| MiaB-like tRNA modifying enzyme YliG [Lutiella nitroferrum 2002]
 gi|224601094|gb|EEG07276.1| MiaB-like tRNA modifying enzyme YliG [Lutiella nitroferrum 2002]
          Length = 370

 Score =  255 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 100/379 (26%), Positives = 162/379 (42%), Gaps = 26/379 (6%)

Query: 102 LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFE 161
            V V GC+  A+GE +    P V  V GP     +   +       R    D        
Sbjct: 6   KVSVTGCL-WAKGEVVRDVHPSVLAVTGPHATDEVMGHVHAHLPKPRGPFVDL------- 57

Query: 162 RLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNG 221
              +   G        A+L I EGC+  CT C++P  RG   SR +  V+ EA  L  +G
Sbjct: 58  ---VPTAGIKLTPKHYAYLKISEGCNHRCTSCIIPSMRGDLDSRPIHDVLSEAENLAKSG 114

Query: 222 VCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
           V E+ ++ Q+ +A+      +    +G   +   ++L   L      VRL Y   +P   
Sbjct: 115 VKELLVISQDTSAYGVDVKYKTGFHNGRPVRTRMTELCEELGRHGIWVRLHYVYPYPHVD 174

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
               +        ++PYL +P Q  S RILK M R   +      I + R + PD+ I S
Sbjct: 175 EVIPLM---RDGKILPYLDIPFQHASQRILKLMKRPANSENVLARIKKWREICPDLVIRS 231

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLC 393
            FIVGFPGET+++F   + L+ +    +   F YSP  G   +++ + V E VK  R   
Sbjct: 232 TFIVGFPGETEEEFEELLALLREAMLDRVGCFTYSPVAGAAANDLPDPVPEEVKEVRKER 291

Query: 394 LQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG--KLVGRSPWLQSVVL--NSKNHNIGD 449
             +   E   +     VGQ + VL+++  ++    +    +P +  +V   ++    +GD
Sbjct: 292 FMEVQAEISAARLARRVGQRMTVLVDEIDEQGAVCRSYADAPEIDGMVFVADADGLQVGD 351

Query: 450 IIKVRITDVKISTLYGELV 468
            ++V I       L+ E V
Sbjct: 352 FVEVEIAASDEHDLWAERV 370


>gi|294643379|ref|ZP_06721198.1| RNA modification enzyme, MiaB family [Bacteroides ovatus SD CC 2a]
 gi|292641257|gb|EFF59456.1| RNA modification enzyme, MiaB family [Bacteroides ovatus SD CC 2a]
          Length = 243

 Score =  255 bits (651), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 93/242 (38%), Positives = 137/242 (56%), Gaps = 2/242 (0%)

Query: 229 GQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLM 288
           GQNVN++R +   GE  TF  LL +++E    VR+R+TTSHP+DMSD  ++    +  + 
Sbjct: 2   GQNVNSYRFERPTGEVVTFPMLLRTVAEAAPGVRIRFTTSHPKDMSDETLEVIAQVPNVC 61

Query: 289 PYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFR 348
            ++HLPVQSGS RILK MNR++T   Y   +  I+ + PD  +++D   GF  ET+ D  
Sbjct: 62  KHIHLPVQSGSSRILKLMNRKYTREWYLDRVAAIKRIIPDCGLTTDIFSGFHSETEKDHA 121

Query: 349 ATMDLVDKIGYAQAFSFKYSPRLGTPGSN-MLEQVDENVKAERLLCLQKKLREQQVSFND 407
            ++ L++  GY  AF FKYS R GT  S  + + V E VK  RL  +           N 
Sbjct: 122 MSLSLMEACGYDAAFMFKYSERPGTYASKHLEDNVPEEVKVRRLNEIIALQNRLSAESNQ 181

Query: 408 ACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGE 466
            C+G+  EVL+E   K    +L GR+   + VV +   H +GD + VR+T+   +TL GE
Sbjct: 182 RCIGKTYEVLVEGVSKRSRDQLFGRTEQNRVVVFDRGTHRVGDFVNVRVTEASSATLKGE 241

Query: 467 LV 468
            +
Sbjct: 242 EI 243


>gi|153816137|ref|ZP_01968805.1| hypothetical protein RUMTOR_02385 [Ruminococcus torques ATCC 27756]
 gi|145846472|gb|EDK23390.1| hypothetical protein RUMTOR_02385 [Ruminococcus torques ATCC 27756]
          Length = 266

 Score =  254 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 87/268 (32%), Positives = 138/268 (51%), Gaps = 8/268 (2%)

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
           + +++ EA++L + GV E+ L+ Q      GK L GEKC    L+  L +I G+  +R  
Sbjct: 1   MERLIKEAKELAEQGVKELILVAQETT-LYGKDLYGEKC-LHRLVEELCKIAGIRWIRIL 58

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
             +P +++D LI+       +  YL LP+Q  SD ILK M RR +  E   I+ ++R   
Sbjct: 59  YCYPEEITDELIEVIKKEPKVCHYLDLPIQHASDSILKRMGRRTSKQELTDIVKKLRKEI 118

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           PDI + +  I GFPGET+D     M  VD++ + +   F YSP   TP + M +Q+ E V
Sbjct: 119 PDICLRTTLITGFPGETEDQHEELMQFVDEMEFDRLGVFTYSPEEDTPAAVMPDQIAEEV 178

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVLNS 442
           K ER   L +  +E      +  +G+ + V+IE    ++   VGR+    P +  ++  +
Sbjct: 179 KEERQADLMELQQEIAFDNAENMIGREMLVMIEGKVADENAYVGRTYRDAPNVDGLIFIN 238

Query: 443 KNHNI--GDIIKVRITDVKISTLYGELV 468
               +  GD  KV+IT      L GEL+
Sbjct: 239 TEEELISGDFAKVKITGALEYDLIGELL 266


>gi|328948729|ref|YP_004366066.1| RNA modification enzyme, MiaB family [Treponema succinifaciens DSM
           2489]
 gi|328449053|gb|AEB14769.1| RNA modification enzyme, MiaB family [Treponema succinifaciens DSM
           2489]
          Length = 482

 Score =  254 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 113/477 (23%), Positives = 203/477 (42%), Gaps = 47/477 (9%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYE-RVNSMDDA-----DLI--VLNTCHIRE 74
           +      ++ GC++N  ++      F   G+    NS+  A     D+I  V+NTC +  
Sbjct: 1   MKNIIHFETLGCRLNQDETEGAARSFSDAGFICEFNSISSAKNPSQDVILSVINTCTVTG 60

Query: 75  KAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVV------ 128
           KA +K    +  +       +++  +  ++V GC A+    EI   S    V+V      
Sbjct: 61  KAEQKARRIIRLL-------LEKFFNAPLIVTGCYAELADSEITSISKNRIVIVPGTKKF 113

Query: 129 ------------------GPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGY 170
                             G   +  L   + +  F    +D+   +       ++    +
Sbjct: 114 VLKEIAVAMNGGDLDFKSGKFNFENLKSFVSKKIFSFERIDSAKKIPMAINPFALYTPVF 173

Query: 171 NRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQ 230
             ++   A L IQ+GC+  C+FC + + RG  +S    ++++ A+++ + G  EI L G 
Sbjct: 174 --EKHSRATLKIQDGCNNSCSFCRIHFARGTSVSLEPEKILERAKEIENLGSSEIVLTGV 231

Query: 231 NVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY 290
           N++ + G   DG    F DLL  L      V+ R ++ +P+ ++  L     D   + P+
Sbjct: 232 NLSQYAGMSKDGAIFDFKDLLSFLLSNTKKVKFRISSFYPQHITKELCAVLSD-KRVQPF 290

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
            HL +QSGSD IL SM R +   +    +  +R  + +  IS D I GFPGET+DDF  T
Sbjct: 291 FHLSIQSGSDSILNSMRRPYKREQVENAVQLLRECKMNPFISCDIIAGFPGETEDDFEQT 350

Query: 351 MDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACV 410
             L  K+ +A   +F +S R GT   +M  ++ E  K ER+  L +     ++S+ ++  
Sbjct: 351 KSLCKKMNFAWIHAFPFSARPGTLAFSMTPKIPERTKNERVKWLAEIAVSGKISYINSFK 410

Query: 411 GQIIEVLIEK----HGKEKGKLVGRSPWLQSVVLNS-KNHNIGDIIKVRITDVKIST 462
            + +E  +EK        K      +         S K    G +  ++I      +
Sbjct: 411 EKTVEATVEKKVLQKSNGKNIFHAVTENFLHAEFESEKKLKAGSVAMLKIISALEDS 467


>gi|224418140|ref|ZP_03656146.1| 2-methylthioadenine synthetase [Helicobacter canadensis MIT
           98-5491]
 gi|253827467|ref|ZP_04870352.1| 2-methylthioadenine synthetase [Helicobacter canadensis MIT
           98-5491]
 gi|313141675|ref|ZP_07803868.1| tRNA modifying enzyme [Helicobacter canadensis MIT 98-5491]
 gi|253510873|gb|EES89532.1| 2-methylthioadenine synthetase [Helicobacter canadensis MIT
           98-5491]
 gi|313130706|gb|EFR48323.1| tRNA modifying enzyme [Helicobacter canadensis MIT 98-5491]
          Length = 423

 Score =  254 bits (648), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 105/429 (24%), Positives = 196/429 (45%), Gaps = 32/429 (7%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           +   + F K++GC+ N++D+  M        + +    +D+D+IV+N+C +   A   V 
Sbjct: 1   MQKPKVFFKTFGCRTNLFDTQVMIHSLKD--FSQTPYEEDSDIIVVNSCTVTNGADSGVR 58

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S++ R+         +     +   GC  + +G+++L++  IV    G      + E+L+
Sbjct: 59  SYINRL---------QNEGKKIFFTGCGVKTQGQDLLQKGLIVGAF-GHSYKESINEILK 108

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           R +        ++ +E   E L   +   +      AF+ IQEGCD  C++C++P  RG 
Sbjct: 109 RTQ--------NFYLEGDLESLDR-NIISDFIGKSRAFIKIQEGCDFACSYCIIPSVRGK 159

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
             S   ++++++  KL  NG  E  L G N+ +W GK  +      + LL S+  I  + 
Sbjct: 160 ARSFEKNKIINQITKLTQNGFSEFILTGTNMGSW-GKDSNEN---LTSLLESICAIPEVK 215

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           RLR  +  P  ++   +    D   +  +LH+ +Q  S  +LK MNR++T  +  ++ + 
Sbjct: 216 RLRLGSLEPSQITQDFLDFL-DHPKIERHLHIALQHTSPFMLKLMNRQNTFEKDLELFNT 274

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +   +   A+ SDFIVG P E+ + +                SF YSPR GT  +++ E+
Sbjct: 275 L--AKKGFALGSDFIVGHPQESQEVWEEAFSNFALFPLTHLHSFIYSPRSGTFSASLKER 332

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDAC--VGQIIEVLIEKHGKEKGKL--VGRSPWLQS 437
           V  ++   R   ++ K+ E   +F        + I VLIE+    +      G   +   
Sbjct: 333 VSGDISKIRKKQIEAKVTENNFAFRQKLSKANKPISVLIEEVKSNENSYLASGFDEYYNK 392

Query: 438 VVLNSKNHN 446
           + + SK   
Sbjct: 393 IQITSKTPL 401


>gi|242309031|ref|ZP_04808186.1| tRNA modifying enzyme [Helicobacter pullorum MIT 98-5489]
 gi|239524455|gb|EEQ64321.1| tRNA modifying enzyme [Helicobacter pullorum MIT 98-5489]
          Length = 424

 Score =  253 bits (646), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 102/423 (24%), Positives = 191/423 (45%), Gaps = 32/423 (7%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R F K++GC+ N++D+  M +      + +    +D+D+IV+N+C +   A   V +++ 
Sbjct: 6   RVFFKTFGCRTNLFDTQVMINSLID--FIQTPYEEDSDIIVINSCTVTNGADSGVRNYVN 63

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R+         +     +   GC  + +G+++L++     ++ G    +   E + +   
Sbjct: 64  RL---------QNEGKKIFFTGCGVKTQGKDLLQKG----LIFGAF-GHSYKEDINKILK 109

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
             +    +  +E   + +     G +R     AF+ IQEGCD  C++C++P  RG   S 
Sbjct: 110 QSQSFYLEGDLESLDKNIITDFVGKSR-----AFIKIQEGCDFACSYCIIPSVRGKARSF 164

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
              +++++ +KL  NG  E  L G N+ +W GK L         LL S+  I  + RLR 
Sbjct: 165 PKEKIINQIKKLTQNGFSEFILTGTNMGSW-GKDLGENIT---KLLESICAIPQVKRLRL 220

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
            +  P  ++   +    D   +  +LH+ +Q  S  +LK MNR++T  +  ++   I   
Sbjct: 221 GSLEPSQITQDFLDFL-DNPKIEKHLHIALQHTSPFMLKLMNRQNTFEKDLELFHTIAQK 279

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
               A+ SDFIVG P E+   +       + +      SF YSPR  T  + + E +  N
Sbjct: 280 --GFALGSDFIVGHPQESQKIWEEAFKNFEMLPLTHLHSFIYSPRSNTLSATLKETIPGN 337

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQI--IEVLIEKHGKEKGKLV--GRSPWLQSVVLN 441
           +  ER   +++K+ +   +F          + +LIE    E       G   +   + ++
Sbjct: 338 IARERKKNIEEKIAQNNFAFRQNLAHTKTPLNILIEDCKFENNTYTSLGFDEYYNKIQIS 397

Query: 442 SKN 444
           SKN
Sbjct: 398 SKN 400


>gi|254167353|ref|ZP_04874205.1| MiaB-like tRNA modifying enzyme, archaeal-type [Aciduliprofundum
           boonei T469]
 gi|197623616|gb|EDY36179.1| MiaB-like tRNA modifying enzyme, archaeal-type [Aciduliprofundum
           boonei T469]
          Length = 386

 Score =  253 bits (646), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 118/425 (27%), Positives = 188/425 (44%), Gaps = 46/425 (10%)

Query: 47  MFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVA 106
           M      E V+  ++AD+I++ TC + E    ++   L RI+ LK    K      +VV 
Sbjct: 1   MLGQAMGEIVSRPEEADVILIGTCVVIEHTENRM---LRRIKELKQYGKK------IVVY 51

Query: 107 GCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIV 166
           GC+  A  E +                  +P           +++ D S  D+      V
Sbjct: 52  GCLPSARKELL--------------DMDVVPIATWEFEMAGEILNLDRSPMDEVFIWDAV 97

Query: 167 DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEIT 226
                      A + I  GC   CT+C+    RG   SRS   ++   +K ++ G  EI 
Sbjct: 98  -----------ATIPIANGCLGQCTYCITRLARGRVKSRSKDWILRLVKKALEQGAVEIR 146

Query: 227 LLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD---MSDCLIKAHGD 283
           +  Q+  A  G+ +  E    ++L+ S++ I G   LR     PR+   +   LI A+ +
Sbjct: 147 ISAQDTAA-YGRDIGTE---LAELINSITAIPGKFYLRVGMMEPRETLRILPELIDAYSN 202

Query: 284 LDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGET 343
              +  +LHLPVQSG D IL  MNR +   ++ +I+   R   P++ +S+D IVGFPGE 
Sbjct: 203 -PKVYKFLHLPVQSGDDEILHRMNRGYKVEDFIKIVRNFRQRFPEMTLSTDIIVGFPGEN 261

Query: 344 DDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQV 403
           D+ F  TM L+ +I        ++SPR  TP           VK      L     E   
Sbjct: 262 DESFENTMKLIKEIKPEILNITRFSPRPKTPAYKWKRPSTNKVKG-WSQKLTALHMENMH 320

Query: 404 SFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTL 463
              ++ +G+  +V++   GK  GK + RS   + VVL+  N  IG    +RIT  + S L
Sbjct: 321 KRFESMLGKEFKVIVPSRGKR-GKYLARSQNYEPVVLD--NAVIGREYIIRITHYEKSHL 377

Query: 464 YGELV 468
            G+++
Sbjct: 378 VGKIL 382


>gi|331007130|ref|ZP_08330347.1| tRNA-i(6)A37 methylthiotransferase [gamma proteobacterium IMCC1989]
 gi|330419065|gb|EGG93514.1| tRNA-i(6)A37 methylthiotransferase [gamma proteobacterium IMCC1989]
          Length = 280

 Score =  252 bits (645), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 115/269 (42%), Positives = 176/269 (65%), Gaps = 11/269 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           ++ ++K++GCQMN YDS RM+D+   S G    +  +DAD++++NTC IREKA EK++  
Sbjct: 21  KKLYIKTHGCQMNEYDSSRMKDLLGESHGMVETDDPEDADVVLINTCSIREKAQEKLFHQ 80

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LGR + LK        ++++ V GCVA  EG  I +R+P V+++ GPQT +RLPE++E  
Sbjct: 81  LGRWKRLKEK----NPNVVIGVGGCVASQEGGAIAKRAPFVDLIFGPQTLHRLPEMIETP 136

Query: 144 R-FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           R  G  VVD  +   +KF+ L           GV+AF++I EGC K+C+FCVVPYTRG E
Sbjct: 137 RDNGVVVVDITFPEIEKFDNLP-----QPVADGVSAFVSIMEGCSKYCSFCVVPYTRGEE 191

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +SR ++ V+ E   L   GV E+ LLGQNVNA+R +  DG     ++L+  ++ I+G+ R
Sbjct: 192 VSRPVNDVLVEVAHLAQQGVREVNLLGQNVNAYRAEAEDGHTVDLAELITYVAAIEGIDR 251

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYL 291
           +RYTTSHP + S+ LI+A+ ++  L+ ++
Sbjct: 252 IRYTTSHPVEFSESLIQAYAEVPELVSHI 280


>gi|315586279|gb|ADU40660.1| possible 2-methylthioadenine synthase [Helicobacter pylori 35A]
          Length = 418

 Score =  251 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 107/438 (24%), Positives = 202/438 (46%), Gaps = 30/438 (6%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ + K++GC+ N++D+  M +      +       +AD+I++N+C +   A   V S+ 
Sbjct: 2   KKVYFKTFGCRTNLFDTQVMGENLKD--FSATLEEQEADIIIINSCTVTNGADSAVRSYA 59

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            ++  L            V+  GC  + +G+E+  +   +  V G     ++  LL+   
Sbjct: 60  KKMARLNKE---------VLFTGCGVKTQGKELFEK-GFLKGVFGHDNKEKINALLQE-- 107

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
             K+    D ++E+K    ++V     + R   AF+ IQEGCD  C +C++P  RG   S
Sbjct: 108 --KKRFFIDDNLENKHLDTTMVSEFVGKTR---AFIKIQEGCDFDCNYCIIPSVRGRARS 162

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
               +++++   L   GV E+ L G NV +  GK    +      L+  LS+I GL R+R
Sbjct: 163 FEERKILEQVSLLCSKGVQEVVLTGTNVGS-YGKD---KGSNIVRLIKKLSQIAGLKRIR 218

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
             +  P  ++D       + D L  +LH+ +Q   D +L+ MNRR+ A   R++++ I S
Sbjct: 219 IGSLEPNQINDE-FLELLEEDFLEKHLHIALQHSHDFMLERMNRRNRAKSDRELLEVIAS 277

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
              + AI +DFIVG PGE++  F      ++ +       F YS R  TP S M + V  
Sbjct: 278 K--NFAIGTDFIVGHPGESESVFEEAFKNLESLPLTHIHPFIYSKRKDTPSSLMTDSVSL 335

Query: 385 NVKAERLLCLQKKLREQQVSFNDAC--VGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
               +RL  ++  +  +  +F      +   ++ L+E    + G+      +   + + S
Sbjct: 336 EDSKKRLNAIKDLISHKNKAFRQLQLKLNTPLKALVETQ--KDGEFKALDQFFNPIKIKS 393

Query: 443 KNHNIGDIIKVRITDVKI 460
                   ++++  ++K 
Sbjct: 394 DKPLRASFLEIKEYEIKE 411


>gi|254166896|ref|ZP_04873750.1| MiaB-like tRNA modifying enzyme, archaeal-type [Aciduliprofundum
           boonei T469]
 gi|197624506|gb|EDY37067.1| MiaB-like tRNA modifying enzyme, archaeal-type [Aciduliprofundum
           boonei T469]
          Length = 386

 Score =  251 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 114/426 (26%), Positives = 189/426 (44%), Gaps = 48/426 (11%)

Query: 47  MFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVA 106
           M      E V+  ++AD+I++ TC + E    ++   +  ++              +VV 
Sbjct: 1   MLGQAMGEIVSRPEEADVILIGTCVVIEHTENRMLRRIEELKRYGKK---------IVVY 51

Query: 107 GCVAQAEGEEILRRSPIVNVV-VGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSI 165
           GC+  A  E +      ++VV +    +    E+L          + D S  D+      
Sbjct: 52  GCLPSARKELL-----DIDVVPIATWEFEMAGEIL----------NLDRSPMDEVFIWDA 96

Query: 166 VDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEI 225
           V           A + I  GC   CT+C+    RG   SRS   ++   +K ++    EI
Sbjct: 97  V-----------ATIPIANGCLGQCTYCITRLARGRVKSRSKEWILRLVKKALEQRAVEI 145

Query: 226 TLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD---MSDCLIKAHG 282
            +  Q+  A  G+ +  E    ++L+ S++ I G   LR     PR+   +   LI A+ 
Sbjct: 146 RISAQDTAA-YGRDIGTE---LAELINSITAIPGKFYLRVGMMEPRETLRILPELIDAYS 201

Query: 283 DLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGE 342
           +   +  +LHLPVQSG + IL  MNR +   ++ +I+   R   P++ +S+D IVGFPGE
Sbjct: 202 N-PKVYKFLHLPVQSGDNEILHRMNRGYKVEDFIKIVRNFRQRFPEMTLSTDIIVGFPGE 260

Query: 343 TDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQ 402
            D+ F  TM L+ +I        ++SPR  TP           VK E    L     E  
Sbjct: 261 NDESFENTMKLIKEIKPEILNITRFSPRPKTPAYKWKRPSTNKVK-EWSQKLAALHMENM 319

Query: 403 VSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKIST 462
               ++ +G+  +V++   GK  GK + RS   + VVL+  N  IG    +RIT  + S 
Sbjct: 320 HKRFESMLGKEFKVIVPSRGKR-GKYLARSQNYEPVVLD--NAVIGREYIIRITHYEKSH 376

Query: 463 LYGELV 468
           L G+++
Sbjct: 377 LVGKIL 382


>gi|94986752|ref|YP_594685.1| 2-methylthioadenine synthetase [Lawsonia intracellularis
           PHE/MN1-00]
 gi|94731001|emb|CAJ54364.1| 2-methylthioadenine synthetase [Lawsonia intracellularis
           PHE/MN1-00]
          Length = 436

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 104/411 (25%), Positives = 192/411 (46%), Gaps = 25/411 (6%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
            P  F + ++GC++N Y+S  + + + +   E V +   AD+I+LNTC I   A      
Sbjct: 4   TPWTFSIVTFGCKVNQYESQSIREAWSNLHGEEVATPQTADIILLNTCAITANA------ 57

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +   R L N   +E  +  +++ GC A     E L + P V   +  +   +L   L  
Sbjct: 58  -ITDARQLINKLHREAPNSKIILTGC-ATDLTNEALYKLPGVYTFISQKNKTQLLSNLPL 115

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            +  +  + T+    + F + SI +   +R       + +Q+GC   CT+C++P TRG  
Sbjct: 116 TQLNQDQLQTN---TNTFPQFSISNFNRSRP-----IVKVQDGCSHSCTYCIIPSTRGKP 167

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE-----I 257
            SRS  + + E ++L++ G  EI L G N+         G K  F +L   L +      
Sbjct: 168 KSRSPKECLIEIQQLLNAGFREIILSGINLR-QYTATQQGCK-DFWELYSFLDKKLSPTW 225

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR-RHTAYEYR 316
           KG+ RLR ++  P  ++   +    +  +    LHL +QSGS  ILK M+R  +T     
Sbjct: 226 KGIARLRISSLDPAQLTQRGLDILSNSHMGCQQLHLSIQSGSAEILKKMHRSHYTPQYLL 285

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
               ++ ++     + +DFI+GFPGET+  F+ T+DL+ ++       F +S R  T  +
Sbjct: 286 DTTKKLSTIWHKFGLGADFIIGFPGETEKHFQETVDLIKELPLTYGHIFPFSARPNTIAA 345

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVG-QIIEVLIEKHGKEKG 426
            +   + ++   +R   +++ + +++  F+   +    + +  E  GK  G
Sbjct: 346 TLPNHIKKSESQQRAATIRQLITQKEKIFHKQLLTMSTLHIAPEGGGKTGG 396


>gi|220904669|ref|YP_002479981.1| MiaB family RNA modification protein [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
 gi|219868968|gb|ACL49303.1| RNA modification enzyme, MiaB family [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
          Length = 506

 Score =  251 bits (640), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 106/434 (24%), Positives = 187/434 (43%), Gaps = 61/434 (14%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           FF+ ++GC++N Y++  + + +   G    +S  +AD+I +N+C I  K      + + R
Sbjct: 6   FFLVTFGCKVNQYETQSLREAWQGLGGVECSSPAEADVICVNSCAITAKGERDARNAVFR 65

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQ---------------------AEGEEILRRSPIVN 125
           +R       +E  D  +++ GC A+                      E +++L + P  +
Sbjct: 66  LR-------REAPDARLILTGCAARLFADYRPRPGAAWAAPDLLVPQEHKDLLLQGPWSS 118

Query: 126 VVVGPQTYYRLPELLERARFGK-------------RVVDTDYSVEDKFERLSIVDGGYNR 172
              GP +       L                    R V+     E+        D   + 
Sbjct: 119 DFAGPDSCATASATLPAQHEKMPSPSGSAPLFTPFREVNRPQKAEEHASTTMNADTNADA 178

Query: 173 KRGVTAF-----------LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNG 221
                +F           L +Q+GC   CT+C+VP TRG   SR +  V+ EAR+L+++G
Sbjct: 179 ANSFPSFNISTFKRARPVLKVQDGCAHRCTYCIVPLTRGKPRSRPVEHVLAEARRLLESG 238

Query: 222 VCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS-----EIKGLVRLRYTTSHPRDMSDC 276
             EI + G N+  +   G D +   F +LL +L      E  GL R R ++  P  + + 
Sbjct: 239 HVEIMISGINLGQY---GRDAQTGDFWNLLRTLDTALAPEFAGLARFRISSLEPGQLDER 295

Query: 277 LIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR-HTAYEYRQIIDRIRSVRPDIAISSDF 335
            +       +L P+LH+ +Q GS  +LK M R  ++     + +  + +  P + + +D 
Sbjct: 296 ALDILRHCRMLCPHLHISLQHGSRNVLKRMGRGHYSPAMLEEAVRELSAHWPAMGLGADI 355

Query: 336 IVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQ 395
           I GFPGET+ D +  ++LV ++    A  F YS R GT       Q+   +K ER   ++
Sbjct: 356 IAGFPGETEKDVQELLELVARLPLGYAHVFPYSRRPGTAAERFEGQIPHALKLERAARVR 415

Query: 396 KKLREQQVSFNDAC 409
           + +  +Q  F  A 
Sbjct: 416 QAVALKQKEFLMAQ 429


>gi|308184088|ref|YP_003928221.1| hypothetical protein HPSJM_01540 [Helicobacter pylori SJM180]
 gi|308060008|gb|ADO01904.1| hypothetical protein HPSJM_01540 [Helicobacter pylori SJM180]
          Length = 418

 Score =  251 bits (640), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 107/438 (24%), Positives = 205/438 (46%), Gaps = 30/438 (6%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ + K++GC+ N++D+  M +      +       +AD+IV+N+C +   A   V S+ 
Sbjct: 2   KKVYFKTFGCRTNLFDTQVMGENLKD--FSATLEEQEADIIVINSCTVTNGADSAVRSYA 59

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            ++  L            V+  GC  + +G+E+  +   +  V G     ++  LL+   
Sbjct: 60  KKMARLNKE---------VLFTGCGVKTQGKELFEK-GFLKGVFGHDNKEKINALLQE-- 107

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
             K+    D ++E+K    ++V     + R   AF+ IQEGCD  C +C++P  RG   S
Sbjct: 108 --KKRFFIDDNLENKHLDTTMVSEFVGKTR---AFIKIQEGCDFDCNYCIIPSVRGRARS 162

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
               +++++   L   GV E+ L G NV +  GK    ++   + L+  LS+I GL R+R
Sbjct: 163 FEERKILEQVGLLCSKGVQEVVLTGTNVGS-YGKD---KESNIARLIKKLSQITGLKRIR 218

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
             +  P  ++D       + D L  +LH+ +Q   D +L+ MNRR+     R+++++I S
Sbjct: 219 IGSLEPNQINDE-FLELLEEDFLEKHLHIALQHSHDFMLERMNRRNRTKSDRELLEKIAS 277

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
              + AI +DFIVG PGE++  F      ++ +       F YS R  TP S M + V  
Sbjct: 278 K--NFAIGTDFIVGHPGESESVFEKAFKNLESLPLTHIHPFIYSKRKDTPSSLMHDSVSL 335

Query: 385 NVKAERLLCLQKKLREQQVSFNDAC--VGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
               +RL  ++  +  +  +F      +   ++ L+E   ++ G+      +   + + S
Sbjct: 336 EDSKKRLNAIKDLIFHKNKAFRQLQLKLNTPLKALVE--AQKDGEFKALDQFFNPIKIKS 393

Query: 443 KNHNIGDIIKVRITDVKI 460
                   ++++  ++K 
Sbjct: 394 DKPLRASFLEIKEYEIKE 411


>gi|193215424|ref|YP_001996623.1| RNA modification enzyme, MiaB family [Chloroherpeton thalassium
           ATCC 35110]
 gi|193088901|gb|ACF14176.1| RNA modification enzyme, MiaB family [Chloroherpeton thalassium
           ATCC 35110]
          Length = 338

 Score =  250 bits (639), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 105/347 (30%), Positives = 174/347 (50%), Gaps = 18/347 (5%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++    + GC++N  ++  + + F  QGYE V+  + ADL ++NTC + E A +K    +
Sbjct: 2   KKVTTYTLGCKLNYSETASLAEQFLKQGYELVSFGEKADLTIINTCSVTENANQKCRQAV 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTY----YRLPELL 140
            R        +K+  +  VVV GC AQ E E +      V++V+G Q      + +P  L
Sbjct: 62  RRA-------LKKSPESFVVVLGCYAQLEPEALAS-IDGVDLVLGAQEKFNLTHFVPSDL 113

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           E+    K  V   Y + D F+    +    N +    A+L IQ+GCD  C FC +P  RG
Sbjct: 114 EKNGEAKIYVSDIY-LHDGFDAAHSITLQTNAELRTRAYLKIQDGCDYSCAFCTIPMARG 172

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
              S+++++ V +A  L+  G  EI L G NV    G             L ++     +
Sbjct: 173 ASRSQAVAETVRQAETLLQAGYQEIVLTGVNVG-DYGTPAGENLLDLLKALKAV----PV 227

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+R ++  P  +S  LI    + + ++P+ H+P+QSGSD +L+ M RR+    YR+ I 
Sbjct: 228 PRIRISSIEPNLVSSELIAFIANSNQVLPHFHMPLQSGSDEMLRGMRRRYLRSLYRERIL 287

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
            I+S+ P   I +D IVGFPGE+D +F+ T   ++ +  +    F +
Sbjct: 288 EIKSLMPAACIGADVIVGFPGESDANFQETYQFLESLPVSYLHVFTF 334


>gi|317013730|gb|ADU81166.1| hypothetical protein HPGAM_01600 [Helicobacter pylori Gambia94/24]
          Length = 418

 Score =  250 bits (639), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 107/438 (24%), Positives = 204/438 (46%), Gaps = 30/438 (6%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ + K++GC+ N++D+  M +      +       +AD+I++N+C +   A   V S+ 
Sbjct: 2   KKVYFKTFGCRTNLFDTQVMGENLKD--FSATLEEQEADIIIINSCTVTNGADSAVRSYA 59

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            ++  L            V+  GC  + +G+E+  +   +  V G     ++  LL+   
Sbjct: 60  KKMARLNKE---------VLFTGCGVKIQGKELFEK-GFLKGVFGHDNKEKINALLQE-- 107

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
             K+    D ++E+K    ++V     + R   AF+ IQEGCD  C +C++P  RG   S
Sbjct: 108 --KKRFFIDDNLENKHLDTTMVSEFVGKTR---AFIKIQEGCDFDCNYCIIPSVRGRARS 162

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
               +++++   L   GV E+ L G NV +  GK    +    + L+  LS+I GL R+R
Sbjct: 163 FEERKILEQVGLLCSKGVQEVVLTGTNVGS-YGKD---KGSNIARLIKKLSQITGLKRIR 218

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
             +  P  ++D       + D L  +LH+ +Q   D +L+ MNRR+     R++++ I S
Sbjct: 219 IGSLEPNQINDE-FLELLEEDFLEKHLHIALQHSHDFMLERMNRRNRTKSDRELLEIIAS 277

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
              + AI +DFIVG PGE++  F      ++ +       F YS R  TP S M + V  
Sbjct: 278 K--NFAIGTDFIVGHPGESESVFEKAFKNLEGLPLTHIHPFIYSKRKDTPSSLMTDSVSL 335

Query: 385 NVKAERLLCLQKKLREQQVSFNDAC--VGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
            V  +RL  ++  +  +  +F      +   ++ L+E   ++ G+      +   + + S
Sbjct: 336 EVSKKRLNAIKDLIFHKNKAFRQLQFKLNTPLKALVE--AQKDGEFKALDQFFNPIKIKS 393

Query: 443 KNHNIGDIIKVRITDVKI 460
                   ++++  ++K 
Sbjct: 394 DKPLRASFLEIKEYEIKE 411


>gi|213609974|ref|ZP_03369800.1| hypothetical protein SentesTyp_05377 [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
          Length = 292

 Score =  250 bits (639), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 93/305 (30%), Positives = 149/305 (48%), Gaps = 21/305 (6%)

Query: 105 VAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLS 164
           V GC+  A+ ++I    P V  + GP +Y ++ + +                 + F  L 
Sbjct: 1   VTGCLG-AKEDQIREVHPKVLEITGPHSYEQVLQHVHHY--------VPKPKHNPFLSL- 50

Query: 165 IVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCE 224
           + + G        A+L I EGC+  CTFC++P  RG  +SR +  V+ EA++L+D GV E
Sbjct: 51  VPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGDLVSRPIGDVLSEAKRLVDAGVKE 110

Query: 225 ITLLGQNVNA------WRGKGLDGE--KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDC 276
           I ++ Q+ +A       R    +GE  K +   L   LS++    RL Y   +P      
Sbjct: 111 ILVISQDTSAYGVDVKHRTGFHNGEPMKTSMVSLCEQLSKLGVWTRLHYVYPYPHVDDVI 170

Query: 277 LIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFI 336
            + A G    ++PYL +P+Q  S RILK M R  +       I + R + P++ + S FI
Sbjct: 171 PLMAEG---KILPYLDIPLQHASPRILKLMKRPGSVDRQLARIKQWREICPELTLRSTFI 227

Query: 337 VGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQK 396
           VGFPGET++DF+  +D + +    +   FKYSP  G   + + +QV E VK ER     +
Sbjct: 228 VGFPGETEEDFQMLLDFLKEARLDRVGCFKYSPVEGAGANELPDQVPEEVKEERWNRFMQ 287

Query: 397 KLREQ 401
             ++ 
Sbjct: 288 LQQQI 292


>gi|207092233|ref|ZP_03240020.1| hypothetical protein HpylHP_04483 [Helicobacter pylori
           HPKX_438_AG0C1]
          Length = 418

 Score =  250 bits (639), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 106/438 (24%), Positives = 202/438 (46%), Gaps = 30/438 (6%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ + K++GC+ N++D+  M +      +       +AD+I++N+C +   A   V S+ 
Sbjct: 2   KKVYFKTFGCRTNLFDTQVMGENLKD--FSATLEEQEADIIIINSCTVTNGADSTVRSYA 59

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            ++  L            V+  GC  + +G+E+  +   +  V G     ++  LL+   
Sbjct: 60  KKMARLNKE---------VLFTGCGVKTQGKELFEK-GFLKGVFGHDNKEKINALLQE-- 107

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
             K+    D ++E+K    ++V     + R   AF+ IQEGCD  C +C++P  RG   S
Sbjct: 108 --KKRFFIDDNLENKHLDTTMVSEFVGKTR---AFIKIQEGCDFDCNYCIIPSVRGRARS 162

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
               +++++   L   GV E+ L G NV +  GK         + L+  LS+I GL R+R
Sbjct: 163 FEERKILEQVGLLCSKGVQEVVLTGTNVGS-YGKD---RGSNIAQLIKKLSQIAGLKRIR 218

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
             +  P  ++D       + D L  +LH+ +Q   D +L+ MNRR+     R+++++I S
Sbjct: 219 IGSLEPNQINDE-FLELLEEDFLEKHLHIALQHSHDFMLERMNRRNRTKSDRELLEKIAS 277

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
              + AI +DFIVG PGE+   F      ++ +       F YS R  TP S M + V  
Sbjct: 278 K--NFAIGTDFIVGHPGESKSVFEKAFKNLEDLPLTHIHPFIYSKRKDTPSSLMTDSVSL 335

Query: 385 NVKAERLLCLQKKLREQQVSFNDAC--VGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
               +RL  ++  +  +  +F      +   ++ L+E   ++ G+      +   + + S
Sbjct: 336 EDSKKRLNAIKDLILHKNKAFRQLQLKLNTPLKALVE--AQKDGEFKALDQFFNPIKIKS 393

Query: 443 KNHNIGDIIKVRITDVKI 460
                   ++++  ++K 
Sbjct: 394 DKPLRASFLEIKEYEIKE 411


>gi|317177100|dbj|BAJ54889.1| hypothetical protein HPF16_0292 [Helicobacter pylori F16]
          Length = 418

 Score =  250 bits (638), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 107/438 (24%), Positives = 203/438 (46%), Gaps = 30/438 (6%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ + K++GC+ N++D+  M +      +       +AD+I++N+C +   A   V S+ 
Sbjct: 2   KKVYFKTFGCRTNLFDTQVMGENLKD--FSATLEEQEADIIIINSCTVTNGADSSVRSYA 59

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            ++  L            V+  GC  + +G+E+  +  ++  V G     ++  LL+   
Sbjct: 60  KKMAQLNKE---------VLFTGCGVKTQGKELFEK-GLLKGVFGHDNKEKINTLLQE-- 107

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
             K+    D ++E+K    ++V     + R   AF+ IQEGCD  C +C++P  RG   S
Sbjct: 108 --KKRFFIDDNLENKHLDTTMVSEFVGKTR---AFIKIQEGCDFDCNYCIIPSVRGRARS 162

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
               +++++   L   GV E+ L G NV +  GK    +    + L+  LS+I GL R+R
Sbjct: 163 FEERKILEQVGLLCSKGVQEVVLTGTNVGS-YGKD---KGSNIARLIKKLSQIAGLKRIR 218

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
             +  P  ++D       + D L  +LH+ +Q   D +L+ MNRR+     R++++ I S
Sbjct: 219 IGSLEPNQINDE-FLELLEEDFLEKHLHIALQHSHDFMLERMNRRNRTKSDRELLEVIAS 277

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
              + AI +DFIVG PGE++  F      ++ +       F YS R  TP S M + V  
Sbjct: 278 K--NFAIGTDFIVGHPGESESVFEEAFKNLESLPLTHIHPFIYSKRKDTPSSLMTDSVSL 335

Query: 385 NVKAERLLCLQKKLREQQVSFNDAC--VGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
               +RL  ++  +  +  +F      +   ++ L+E    + G+      +   + + S
Sbjct: 336 EDSKKRLNAIKDLILHKNKAFRQLQLKLNTPLKALVETQ--KDGEFKALDQFFNPIKIKS 393

Query: 443 KNHNIGDIIKVRITDVKI 460
                   +++R  ++K 
Sbjct: 394 DKPLRASFLEIRDYEIKE 411


>gi|317010566|gb|ADU84313.1| hypothetical protein HPSA_01445 [Helicobacter pylori SouthAfrica7]
          Length = 418

 Score =  250 bits (638), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 107/438 (24%), Positives = 207/438 (47%), Gaps = 30/438 (6%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ + K++GC+ N++D+  M +      +      ++AD+I++N+C +   A   V S+ 
Sbjct: 2   KKVYFKTFGCRTNLFDTQVMGENLKD--FSATLEENEADIIIINSCTVTNGADSAVRSYA 59

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            ++  L            V+  GC  + +G+E+  +   +  V G     ++  LL+   
Sbjct: 60  KKMARLNKE---------VLFTGCGVKTQGKELFEK-GFLKGVFGHDNKEKINALLQE-- 107

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
             K+    D ++E+K    ++V     + R   AF+ IQEGCD  C +C++P  RG   S
Sbjct: 108 --KKRFFIDDNLENKHLDTTMVSEFVGKTR---AFIKIQEGCDFDCNYCIIPSVRGRARS 162

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
               +++++   L + GV E+ L G NV +  GK    +    + L+  LS+I GL R+R
Sbjct: 163 FEERKILEQVSLLCNKGVQEVVLTGTNVGS-YGKD---KGSNIARLIKKLSQIAGLKRIR 218

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
             +  P  ++D       + D L  +LH+ +Q   D +L+ MNRR+     R+++++I S
Sbjct: 219 IGSLEPNQINDE-FLELLEEDFLEKHLHIALQHSHDFMLERMNRRNRIKSDRELLEKIAS 277

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
              + AI +DFIVG PGE++  F    + ++ +       F YS R  TP S M + V  
Sbjct: 278 K--NFAIGTDFIVGHPGESESVFEKAFENLEGLPLTHIHPFIYSKRKDTPSSLMHDSVSL 335

Query: 385 NVKAERLLCLQKKLREQQVSFNDACV--GQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
            V  +RL  ++  +  +  +F          ++ L+E   ++ G+      +   + + S
Sbjct: 336 EVSKKRLNAIKDLIFHKNKAFRQLQFKRNTPLKALVE--VQKDGEFKALDQFFNPIKIKS 393

Query: 443 KNHNIGDIIKVRITDVKI 460
                   ++++  ++K 
Sbjct: 394 DKPLRASFLEIKEYEIKE 411


>gi|317181628|dbj|BAJ59412.1| hypothetical protein HPF57_0338 [Helicobacter pylori F57]
          Length = 418

 Score =  249 bits (636), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 108/438 (24%), Positives = 203/438 (46%), Gaps = 30/438 (6%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ + K++GC+ N++D+  M +      +       +AD+I++N+C +   A   V S+ 
Sbjct: 2   KKVYFKTFGCRTNLFDTQVMGENLKD--FSATLEEQEADIIIINSCTVTNGADSAVRSYA 59

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            ++  L            V+  GC  + +G+E+  +   +  V G     ++  LL+   
Sbjct: 60  KKMARLNKE---------VLFTGCGVKTQGKELFEK-GFLKGVFGHDNKEKINALLQE-- 107

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
             K+    D ++E+K    ++V     + R   AF+ IQEGCD  C +C++P  RG   S
Sbjct: 108 --KKRFFIDDNLENKHLDTTMVSEFVGKTR---AFIKIQEGCDFDCNYCIIPSVRGRARS 162

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
               +++++   L   GV E+ L G NV +  GK         + L+  LS+I GL R+R
Sbjct: 163 FEERKILEQVSLLCSKGVQEVVLTGTNVGS-YGKD---RGSNIARLIKKLSQIAGLKRIR 218

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
             +  P  ++D       + D L  +LH+ +Q   D +L+ MNRR+ A   R++++ I S
Sbjct: 219 IGSLEPNQINDE-FLELLEEDFLEKHLHIALQHSHDFMLERMNRRNRAKSDRELLEVIAS 277

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
              + AI +DFIVG PGE++  F      ++ +       F YS R  TP S M + V  
Sbjct: 278 K--NFAIGTDFIVGHPGESESVFEEAFKNLESLPLTHIHPFIYSKRKDTPSSLMTDSVSL 335

Query: 385 NVKAERLLCLQKKLREQQVSFNDAC--VGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
               +RL  ++  +  +  +F      +   ++ L+E   ++ G+      +   + + S
Sbjct: 336 EDSKKRLNAIKDLILHKNKAFRQLQLKLNTPLKALVE--VQKDGEFKALDQFFNPIKIKS 393

Query: 443 KNHNIGDIIKVRITDVKI 460
                   +++R  ++K 
Sbjct: 394 DKPLRASFLEIRDYEIKE 411


>gi|325473662|gb|EGC76851.1| MiaB-like tRNA modifying enzyme [Treponema denticola F0402]
          Length = 468

 Score =  249 bits (636), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 115/471 (24%), Positives = 210/471 (44%), Gaps = 52/471 (11%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADL-----IVLNTCHIREKAAEKVYSF 83
           +++ GC++N  +S  +   F   G++  +   +  +      ++NTC +  KA +K    
Sbjct: 9   IETLGCRLNQVESEALAVRFAECGFDVFSKEAETSILPVKLCIVNTCTVTGKAEQK---- 64

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGP------------- 130
               R L    +KE  + +++V GC A+ E + I + +  +    G              
Sbjct: 65  ---ARRLIRLLLKEHEESVILVTGCYAELEADSIEKINKRIIAFSGKKKDELDGLPQFLK 121

Query: 131 QTYYRLPELLERARFGKR----VVDTDYSVEDKFERLSIVDGGYNRKRGV---------- 176
            +  +  +L E     K+      +  YS ED+ ++  ++     RK             
Sbjct: 122 DSCLKNKDLKEDTVNLKKNLLIFRNKIYSKEDRLDKSFLLKETERRKSMFKLSSPVFVFH 181

Query: 177 -TAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW 235
             A L IQ+GC+  C +C +   RG  +S    + V    ++  NG  E+ L G N++ +
Sbjct: 182 SRASLKIQDGCNNACAYCRIRLARGTSVSLPAEEAVRRIVQIEKNGAAEVVLSGVNLSQY 241

Query: 236 RGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPV 295
           R +   G    F++LL  L E    +RLR ++ +P  + D +++   +   + P+ HL +
Sbjct: 242 RDETYGG----FANLLAKLLENTKKIRLRISSMYPECVDDGILEIVAN-KRICPHFHLSI 296

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
           QSGSD+ILK+MNR +   + R+ I+ +R  + +  I  D I GFP ET+DDF  T  + +
Sbjct: 297 QSGSDKILKAMNRPYREADIRRAINNLRKAKDNPFIGCDIITGFPSETEDDFLQTFKMCE 356

Query: 356 KIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIE 415
           ++       F +S R GT   +M  +V E     R   L +   +   S+  +C G++  
Sbjct: 357 ELKIPGIHVFPFSARPGTRAFSMRPKVPEREAGRRASLLSELSGKNYQSYLASCNGKLFF 416

Query: 416 VLIEKH-GKEKGKLVGRSPWL----QSVVLNSKNHNIGDIIKVRITDVKIS 461
            +IEK    E  ++V  +         V   ++N+  G+ + V I D    
Sbjct: 417 GVIEKPQNNEDLRIV--TENYLSLPLVVNKKAENYKGGEGLFVVIKDGNAY 465


>gi|298736768|ref|YP_003729298.1| hypothetical protein HPB8_1277 [Helicobacter pylori B8]
 gi|298355962|emb|CBI66834.1| conserved hypothetical protein [Helicobacter pylori B8]
          Length = 418

 Score =  249 bits (636), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 107/438 (24%), Positives = 203/438 (46%), Gaps = 30/438 (6%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ + K++GC+ N++D+  M +      +       +AD+IV+N+C +   A   V S+ 
Sbjct: 2   KKVYFKTFGCRTNLFDTQVMGENLKD--FSATLEEQEADIIVINSCTVTNGADSAVRSYA 59

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            ++  L            V+  GC  + +G+E+  +   +  V G     ++  LL+   
Sbjct: 60  KKMVRLNKE---------VLFTGCGVKTQGKELFEK-GFLKGVFGHDNKEKINALLQE-- 107

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
             K+    D ++E+K    ++V     + R   AF+ IQEGCD  C +C++P  RG   S
Sbjct: 108 --KKRFFIDDNLENKHLDTTMVSEFVGKTR---AFIKIQEGCDFDCNYCIIPSVRGRARS 162

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
               +++++   L   GV E+ L G NV +  GK         + L+  LS+I GL R+R
Sbjct: 163 FEERKILEQVGLLCSKGVQEVVLTGTNVGS-YGKD---RGSNIARLIKKLSQIAGLKRIR 218

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
             +  P  ++D       + D L  +LH+ +Q   D +L+ MNRR+     R+++++I S
Sbjct: 219 IGSLEPNQINDE-FLELLEEDFLEKHLHIALQHSHDFMLERMNRRNRTKSDRELLEKIAS 277

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
              + AI +DFIVG PGE++  F      ++ +       F YS R  TP S M + V  
Sbjct: 278 K--NFAIGTDFIVGHPGESESVFEKAFKNLESLPLTHIHPFIYSKRKDTPSSLMRDSVSL 335

Query: 385 NVKAERLLCLQKKLREQQVSFN--DACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
               +RL  ++  +  +  +F      +   ++ L+E   ++ G+      +   + + S
Sbjct: 336 EDSKKRLNAIKDLILHKNKAFRLLQLKLNTPLKALVE--AQKDGEFKALDQFFNPIKIKS 393

Query: 443 KNHNIGDIIKVRITDVKI 460
                   ++++  ++K 
Sbjct: 394 DKPLRASFLEIKEYEIKE 411


>gi|317179320|dbj|BAJ57108.1| hypothetical protein HPF30_1011 [Helicobacter pylori F30]
          Length = 418

 Score =  249 bits (636), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 107/438 (24%), Positives = 202/438 (46%), Gaps = 30/438 (6%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ + K++GC+ N++D+  M +      +       +AD+I++N+C +   A   V S+ 
Sbjct: 2   KKVYFKTFGCRTNLFDTQVMGENLKD--FSATLEEQEADIIIINSCTVTNGADSAVRSYA 59

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            ++  L            V+  GC  + +G+E+  +  ++  V G     ++  LL+   
Sbjct: 60  KKMARLNKE---------VLFTGCGVKTQGKELFEK-GLLKGVFGHDNKEKINALLQE-- 107

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
             K+    D ++E+K    ++V     + R   AF+ IQEGCD  C +C++P  RG   S
Sbjct: 108 --KKRFFIDDNLENKHLDTTMVSEFVGKTR---AFIKIQEGCDFDCNYCIIPSVRGRARS 162

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
               +++++   L   GV E+ L G NV +  GK         + L+  LS+I GL R+R
Sbjct: 163 FEERKILEQVGLLCSKGVQEVVLTGTNVGS-YGKD---RGSNIARLIKKLSQIAGLKRIR 218

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
             +  P  ++D       + D L  +LH+ +Q   D +L+ MNRR+     R++++ I S
Sbjct: 219 IGSLEPNQINDE-FLELLEEDFLEKHLHIALQHSHDFMLEKMNRRNRTKSDRELLEVIAS 277

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
              + AI +DFIVG PGE++  F      ++ +       F YS R  TP S M + V  
Sbjct: 278 K--NFAIGTDFIVGHPGESESVFEEAFKNLESLPLTHIHPFIYSKRKDTPSSLMTDSVSL 335

Query: 385 NVKAERLLCLQKKLREQQVSFNDAC--VGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
               +RL  ++  +  +  +F      +   ++ L+E    + G+      +   + + S
Sbjct: 336 EDSKKRLNAIKDLILHKNKAFRQLQLKLNTPLKALVETQ--KDGEFKALDQFFNPIKIKS 393

Query: 443 KNHNIGDIIKVRITDVKI 460
                   +++R  ++K 
Sbjct: 394 DKPLRASFLEIRDYEIKE 411


>gi|217033424|ref|ZP_03438854.1| hypothetical protein HP9810_1g38 [Helicobacter pylori 98-10]
 gi|216944129|gb|EEC23557.1| hypothetical protein HP9810_1g38 [Helicobacter pylori 98-10]
          Length = 418

 Score =  249 bits (636), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 107/438 (24%), Positives = 205/438 (46%), Gaps = 30/438 (6%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ + K++GC+ N++D+  M +      +       +AD+I++N+C +   A   V S+ 
Sbjct: 2   KKVYFKTFGCRTNLFDTQVMGENLKD--FSATLEEQEADIIIINSCTVTNGADSAVRSYA 59

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            ++  L            V+  GC  + +G+E+  +  ++  V G     ++  LL+   
Sbjct: 60  KKMVRLNKE---------VLFTGCGVKTQGKELFEK-GLLKGVFGHDNKEKINALLQE-- 107

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
             K+    D ++E+K    ++V     + R   AF+ IQEGCD  C +C++P  RG   S
Sbjct: 108 --KKRFFIDDNLENKHLDTTMVSEFVGKTR---AFIKIQEGCDFDCNYCIIPSVRGRARS 162

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
               +++++   L   GV E+ L G NV +  GK    +    + L+  LS+I GL R+R
Sbjct: 163 FEERKILEQVSLLCSKGVQEVVLTGTNVGS-YGKD---KGSNIARLIKKLSQIAGLKRIR 218

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
             +  P  ++D       + D L  +LH+ +Q   D +L+ MNRR+ A   R++++ I S
Sbjct: 219 IGSLEPNQINDE-FLELLEEDFLEKHLHIALQHSHDFMLERMNRRNRAKSDRELLEVIAS 277

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
              + AI +DFI+G PGE++  F      ++ +       F YS R  TP S M + V  
Sbjct: 278 K--NFAIGTDFIIGHPGESESVFEEAFKNLESLPLTHIHPFIYSKRKDTPSSLMTDSVSL 335

Query: 385 NVKAERLLCLQKKLREQQVSFNDAC--VGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
               +RL  ++  +  +  +F      +   ++ L+E   ++ G+      +   + + S
Sbjct: 336 EDSKKRLNAIKDLILHKNKAFRQLQLKLNTPLKALVE--AQKDGEFKALDQFFNPIKIKS 393

Query: 443 KNHNIGDIIKVRITDVKI 460
                   +++R  ++K 
Sbjct: 394 DKPLRASFLEIRDYEIKE 411


>gi|322379439|ref|ZP_08053809.1| Radical SAM [Helicobacter suis HS1]
 gi|322380950|ref|ZP_08055016.1| MiaB-like rRNA/tRNA modification protein [Helicobacter suis HS5]
 gi|321146622|gb|EFX41456.1| MiaB-like rRNA/tRNA modification protein [Helicobacter suis HS5]
 gi|321148148|gb|EFX42678.1| Radical SAM [Helicobacter suis HS1]
          Length = 419

 Score =  249 bits (635), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 106/431 (24%), Positives = 194/431 (45%), Gaps = 34/431 (7%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           ++ Q+ + K++GC+ N++D+  M        +E  N  ++A +I+LN+C +   A     
Sbjct: 1   MMKQKVYFKTFGCRTNLFDTQVMLAHLKD--FETTNHEEEAQIIILNSCTVTNDADYSAR 58

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S+  +   L            V   GC A  +G ++  ++  V  V G      +  LL+
Sbjct: 59  SYAKKATRLGKK---------VYFTGCGANTQGLQLF-QNGHVFGVFGHDHKEEINALLQ 108

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
             +         +  EDK E L  +    N      AF+ IQEGCD  C++C++P  RG 
Sbjct: 109 EKQ--------GFFHEDKQECLDQI-LLSNFVGKTRAFVKIQEGCDFRCSYCIIPTVRGQ 159

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
             S +   V+ +   L   GV E+ L G NV ++   GLD      + L+  ++++  + 
Sbjct: 160 SRSLNQDHVLKQIEMLSQAGVLEVVLTGTNVGSY---GLD-RGTNLAHLILKIADLTPIK 215

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R  +  P  ++   ++   D  +L  +LH+ +Q   D +L+ M RR+      +++++
Sbjct: 216 RVRIGSLEPSQINTEFLELL-DHPILERHLHIALQHSHDNMLRRMRRRNRVGSDIKLLEK 274

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML-- 379
           I S     AI +DFIVG P E +  ++  +    ++       F YS R  TP S M   
Sbjct: 275 IASK--GFAIGTDFIVGHPYEDELTWQEALLNFKQLPLTHIHPFIYSVRDNTPSSKMPLN 332

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACV--GQIIEVLIEKHGKEKGKLVGRSPWLQS 437
            +V  N+   RL  ++  +  Q ++F        +++EV++E    +     G   +   
Sbjct: 333 ARVPGNIAKTRLDQIKTHVIAQNLAFRQQLKANREVLEVIVENF--KAPYYRGYDQYFNP 390

Query: 438 VVLNSKNHNIG 448
           V + SK +  G
Sbjct: 391 VKILSKQNLQG 401


>gi|255323492|ref|ZP_05364623.1| 2-methylthioadenine synthetase [Campylobacter showae RM3277]
 gi|255299529|gb|EET78815.1| 2-methylthioadenine synthetase [Campylobacter showae RM3277]
          Length = 415

 Score =  249 bits (635), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 88/387 (22%), Positives = 172/387 (44%), Gaps = 22/387 (5%)

Query: 44  MEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLV 103
           M     +  YE  + +  AD+I++NTC     A E+    +  +   +          L+
Sbjct: 1   MLGRLSN--YEITSDVASADVIIVNTCGFINSAKEESIRAILDMHEARKK------GSLL 52

Query: 104 VVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERL 163
           VV GC+ Q   EE+++  P V++  G   Y ++ E++ + +           +      L
Sbjct: 53  VVTGCLMQRYREELMKELPEVDLFTGVGDYDKIDEIILKKQN----------LFSPDTYL 102

Query: 164 SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVC 223
              +          A++ I EGC++ C+FC +P  +G   SR+L  +VDE +KL+  G  
Sbjct: 103 QASEERVITGSNYHAYIKISEGCNQKCSFCAIPTFKGKLKSRALENIVDEVQKLVKKGYY 162

Query: 224 EITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGD 283
           + + L Q+ +++       +      L+ ++ +I+G+   R    +P   S+ LI+    
Sbjct: 163 DFSFLSQDSSSYMRDHAVSDG--LISLIDAVEKIEGVKTARILYLYPSTTSNALIERIIA 220

Query: 284 LDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGET 343
             V + Y  +P+Q  S+++LK M R   A   +++++ ++   P   + +  IVG PGE+
Sbjct: 221 SRVFVNYFDMPIQHSSEKMLKIMRRGSGAVRIKELLNLMKKA-PGAFLRTGVIVGHPGES 279

Query: 344 DDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQV 403
           + +F      + +  + +  +F YS    T    M EQ+   + ++RL  ++K  R    
Sbjct: 280 EAEFDELCAFLQEFKFDRVSAFAYSKEEDTLSYEM-EQLPAKIISKRLSKIEKITRAAIE 338

Query: 404 SFNDACVGQIIEVLIEKHGKEKGKLVG 430
           +     +GQ   V +E    E      
Sbjct: 339 ASFARELGQKFIVSLEGESSEGEMFYA 365


>gi|261837731|gb|ACX97497.1| hypothetical protein KHP_0283 [Helicobacter pylori 51]
          Length = 418

 Score =  248 bits (634), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 105/424 (24%), Positives = 196/424 (46%), Gaps = 30/424 (7%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ + K++GC+ N++D+  M +      +       +AD+I++N+C +   A   V S+ 
Sbjct: 2   KKVYFKTFGCRTNLFDTQVMGENLKD--FSATLEEQEADIIIINSCTVTNGADSAVRSYA 59

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            ++  L            V+  GC  + +G+E+  +  ++  V G     ++  LL+   
Sbjct: 60  KKMARLNKE---------VLFTGCGVKTQGKELFEK-GLLKGVFGHDNKEKINALLQE-- 107

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
             K+    D ++E+K    ++V     + R   AF+ IQEGCD  C +C++P  RG   S
Sbjct: 108 --KKRFFIDDNLENKHLDTTMVSEFVGKTR---AFIKIQEGCDFDCNYCIIPSVRGRARS 162

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
               +++++   L   GV E+ L G NV +  GK    +    + L+  LS+I GL R+R
Sbjct: 163 FEERKILEQVGLLCSKGVQEVVLTGTNVGS-YGKD---KGSNIARLIKKLSQIAGLKRIR 218

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
             +  P  ++D       + D L  +LH+ +Q   D +L+ MNRR+     R++++ I S
Sbjct: 219 IGSLEPNQINDE-FLELLEEDFLEKHLHIALQHSHDFMLERMNRRNRTKSDRELLEVIAS 277

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
              + AI +DFIVG PGE++  F      ++ +       F YS R  TP S M + V  
Sbjct: 278 K--NFAIGTDFIVGHPGESESVFEEAFKNLESLPLTHIHPFIYSKRKDTPSSLMTDSVSL 335

Query: 385 NVKAERLLCLQKKLREQQVSFNDAC--VGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
               +RL  ++  +  +  +F      +   ++ L+E    + G+      +   + + S
Sbjct: 336 EDSKKRLNAIKDLILHKNKAFRQLQLKLNTPLKALVETQ--KDGEFKALDQFFNPIKIKS 393

Query: 443 KNHN 446
               
Sbjct: 394 DKPL 397


>gi|208434231|ref|YP_002265897.1| hypothetical protein HPG27_264 [Helicobacter pylori G27]
 gi|208432160|gb|ACI27031.1| hypothetical protein HPG27_264 [Helicobacter pylori G27]
          Length = 418

 Score =  248 bits (634), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 107/438 (24%), Positives = 202/438 (46%), Gaps = 30/438 (6%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ + K++GC+ N++D+  M +      +       +AD+IV+N+C +   A   V S+ 
Sbjct: 2   KKVYFKTFGCRTNLFDTQVMGENLKD--FSATLEEQEADIIVINSCTVTNGADSAVRSYA 59

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            ++  L            V+  GC  + +G+E+  +   +  V G     ++  LL+   
Sbjct: 60  KKMARLDKE---------VLFTGCGVKTQGKELFEK-GFLKGVFGHDNKEKINALLQE-- 107

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
             K+    D ++E+K    ++V     + R   AF+ IQEGCD  C +C++P  RG   S
Sbjct: 108 --KKRFFIDDNLENKHLDTTMVSEFVGKTR---AFIKIQEGCDFDCNYCIIPSVRGRARS 162

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
               +++++   L   GV E+ L G NV +  GK         + L+  LS+I GL R+R
Sbjct: 163 FEERKILEQVGLLCSKGVQEVVLTGTNVGS-YGKD---RGSNIARLIKKLSQIAGLKRIR 218

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
             +  P  ++D       + D L  +LH+ +Q   D +L+ MNRR+     R+++++I S
Sbjct: 219 IGSLEPNQINDE-FLELLEEDFLEKHLHIALQHSHDFMLERMNRRNRTKSDRELLEKIAS 277

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
              + AI +DFIVG PGE+   F      ++ +       F YS R  TP S M + V  
Sbjct: 278 K--NFAIGTDFIVGHPGESKSVFEKAFKNLESLPLTHIHPFIYSKRKDTPSSLMHDSVSL 335

Query: 385 NVKAERLLCLQKKLREQQVSFNDAC--VGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
               +RL  ++  +  +  +F      +   ++ L+E   ++ G+      +   + + S
Sbjct: 336 EDSKKRLNAIKDLIFHKNKAFRQLQLKLNTPLKALVE--AQKDGEFKALDQFFNPIKIKS 393

Query: 443 KNHNIGDIIKVRITDVKI 460
                   ++++  ++K 
Sbjct: 394 DKPLRASFLEIKEYEIKE 411


>gi|157146515|ref|YP_001453834.1| hypothetical protein CKO_02276 [Citrobacter koseri ATCC BAA-895]
 gi|157083720|gb|ABV13398.1| hypothetical protein CKO_02276 [Citrobacter koseri ATCC BAA-895]
          Length = 280

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 91/283 (32%), Positives = 144/283 (50%), Gaps = 15/283 (5%)

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA------WRGKGLDGE--KCTFSD 249
            RG  +SR + +V+ EA++L+D GV EI ++ Q+ +A       R    +GE  K +  D
Sbjct: 1   MRGDLVSRPIGEVLSEAKRLVDAGVKEILVISQDTSAYGVDVKHRTGFHNGEPVKTSMVD 60

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
           L   LS++    RL Y   +P       + A G    ++PYL +P+Q  S RILK M R 
Sbjct: 61  LCEQLSKLGIWTRLHYVYPYPHVDDVIPLMAEG---KILPYLDIPLQHASPRILKLMKRP 117

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369
                    I + R + P++ + S FIVGFPGET+DDF+  +D + +    +   FKYSP
Sbjct: 118 GAVDRQLARIKQWREICPELTLRSTFIVGFPGETEDDFQMLLDFLKEARLDRVGCFKYSP 177

Query: 370 RLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GK 427
             G   + + +QV E VK ER     +  ++         VG+ I V+I++  KE   G+
Sbjct: 178 VEGAGANALPDQVPEEVKEERWNRFMQLQQQISAERLQEKVGREILVIIDEVDKEGAIGR 237

Query: 428 LVGRSPWLQS-VVLNSK-NHNIGDIIKVRITDVKISTLYGELV 468
            +  +P +   V LN + N   GD+I+V++ +     L+G  V
Sbjct: 238 SMADAPEIDGAVYLNGETNVKPGDVIRVKVDNADEYDLWGSRV 280


>gi|210134483|ref|YP_002300922.1| miaB-like tRNA modifying enzyme [Helicobacter pylori P12]
 gi|210132451|gb|ACJ07442.1| miaB-like tRNA modifying enzyme [Helicobacter pylori P12]
          Length = 418

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 106/438 (24%), Positives = 204/438 (46%), Gaps = 30/438 (6%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ + K++GC+ N++D+  M +      +       +AD++V+N+C +   A   V S+ 
Sbjct: 2   KKVYFKTFGCRTNLFDTQVMGENLKD--FSATLEEQEADIVVINSCTVTNGADSAVRSYA 59

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            ++  L            V+  GC  + +G+E+  +   +  V G     ++  LL+   
Sbjct: 60  KKMARLNKE---------VLFTGCGVKTQGKELFEK-GFLKGVFGHDNKEKINALLQE-- 107

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
             K+    D ++E+K    ++V     + R   AF+ IQEGCD  C +C++P  RG   S
Sbjct: 108 --KKRFFIDDNLENKHLDTTMVSEFVGKTR---AFIKIQEGCDFDCNYCIIPSVRGRARS 162

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
               +++++   L   GV E+ L G NV +  GK    ++   + L+  LS+I GL R+R
Sbjct: 163 FEERKILEQVGLLCSKGVQEVVLTGTNVGS-YGKD---KESNIARLIKKLSQIAGLKRIR 218

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
             +  P  ++D       + D L  +LH+ +Q   D +L+ MNRR+     R+++++I S
Sbjct: 219 IGSLEPNQINDE-FLELLEEDFLEKHLHIALQHSHDFMLERMNRRNRTKSDRELLEKIAS 277

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
              + AI +DFIVG PGE+   F      ++ +       F YS R  TP S M + V  
Sbjct: 278 K--NFAIGTDFIVGHPGESGSVFEKAFKNLESLPLTHIHPFIYSKRKDTPSSLMRDSVSL 335

Query: 385 NVKAERLLCLQKKLREQQVSFNDAC--VGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
               +RL  ++  +  +  +F      +   ++ L+E   ++ G+      +   + + S
Sbjct: 336 EDSKKRLNAIKDLILHKNKAFRQLQLKLNTPLKALVE--AQKDGEFKALDQFFNPIKIKS 393

Query: 443 KNHNIGDIIKVRITDVKI 460
                   ++++  ++K 
Sbjct: 394 DKPLRASFLEIKEYEIKE 411


>gi|126643044|ref|YP_001086028.1| putative tRNA-i(6)A37 modification enzyme [Acinetobacter baumannii
           ATCC 17978]
 gi|126388928|gb|ABO13426.1| putative tRNA-i(6)A37 modification enzyme [Acinetobacter baumannii
           ATCC 17978]
          Length = 246

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 99/239 (41%), Positives = 153/239 (64%), Gaps = 2/239 (0%)

Query: 232 VNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL 291
           +N +RG+  +G  CTF +LL  ++EI G+ RLRYTTSHP + SD LI+ + DL  ++ +L
Sbjct: 1   MNGYRGETFEGGICTFPELLRLVAEIPGIGRLRYTTSHPLEFSDELIQCYEDLPQMVSHL 60

Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351
           HLPVQSGS+ +LK+M R HT   Y   I ++R +RPD+ +SSDFI+GFPGETD++F  T+
Sbjct: 61  HLPVQSGSNDVLKAMKRNHTIDVYIDKIAKLRKIRPDMHLSSDFIIGFPGETDENFAKTL 120

Query: 352 DLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVG 411
             +  + +  ++SF YS R GTP S++ +   E+VK ERL  +Q+ +++  +   DA +G
Sbjct: 121 QFIKDLDFDHSYSFVYSKRPGTPASDLPDTTPEHVKKERLAQVQQVIKQSSIEKTDAMLG 180

Query: 412 QIIEVLIEKHGK-EKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKI-STLYGELV 468
           +I  VLIEK    +   LVG +   + V        +G   ++ IT++K  + +YGEL+
Sbjct: 181 KIERVLIEKVSDQDPNILVGTADNTRLVTFVGDASWVGRFAEIEITEIKTLNLVYGELL 239


>gi|332673126|gb|AEE69943.1| possible 2-methylthioadenine synthase [Helicobacter pylori 83]
          Length = 418

 Score =  247 bits (631), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 106/438 (24%), Positives = 203/438 (46%), Gaps = 30/438 (6%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ + K++GC+ N++D+  M +      +       +AD+I++N+C +   A   V S+ 
Sbjct: 2   KKVYFKTFGCRTNLFDTQVMGENLKD--FSATLEEQEADIIIINSCTVTNGADSAVRSYA 59

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            ++  L            V+  GC  + +G+E+  +  ++  V G     ++  LL+   
Sbjct: 60  KKMVRLDKE---------VLFTGCGVKTQGKELFEK-GLLKGVFGHDNKEKINALLQE-- 107

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
             K+    D ++E+K    ++V     + R   AF+ IQEGCD  C +C++P  RG   S
Sbjct: 108 --KKRFFIDDNLENKHLDTTMVSEFVGKTR---AFIKIQEGCDFDCNYCIIPSVRGRARS 162

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
               +++++   L   GV E+ L G NV +  GK    +    + L+  LS+I GL R+R
Sbjct: 163 FEERKILEQVSLLCSKGVQEVVLTGTNVGS-YGKD---KGSNIARLIKKLSQIAGLKRIR 218

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
             +  P  ++D       + D L  +LH+ +Q   D +L+ MNRR+     R++++ I S
Sbjct: 219 IGSLEPNQINDE-FLELLEEDFLEKHLHIALQHSHDFMLERMNRRNRIKSDRELLEVIAS 277

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
              + AI +DFIVG PGE++  F      ++ +       F YS R  TP S M + V  
Sbjct: 278 K--NFAIGTDFIVGHPGESESVFEEAFKNLESLPLTHIHPFIYSKRKDTPSSLMTDSVSL 335

Query: 385 NVKAERLLCLQKKLREQQVSFNDAC--VGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
               +RL  ++  +  +  +F      +   ++ L+E    + G+      +   + + S
Sbjct: 336 EDSKKRLNAIKDLILHKNKAFRQLQLKLNTPLKALVETQ--KDGEFKALDQFFNPIKIKS 393

Query: 443 KNHNIGDIIKVRITDVKI 460
                   ++++  ++K 
Sbjct: 394 DKPLRASFLEIKEYEIKE 411


>gi|42527391|ref|NP_972489.1| MiaB-like tRNA modifying enzyme [Treponema denticola ATCC 35405]
 gi|41817976|gb|AAS12400.1| MiaB-like tRNA modifying enzyme [Treponema denticola ATCC 35405]
          Length = 468

 Score =  247 bits (631), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 113/471 (23%), Positives = 208/471 (44%), Gaps = 52/471 (11%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADL-----IVLNTCHIREKAAEKVYSF 83
           +++ GC++N  +S  +   F   G++  +   +  +      ++NTC +  KA +K    
Sbjct: 9   IETLGCRLNQVESEALAVRFAECGFDVFSKEAETSILPVKLCIVNTCTVTGKAEQK---- 64

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGP------------- 130
               R L    +KE  + +++V GC A+ E + I + +  +    G              
Sbjct: 65  ---ARRLIRLLLKEHEESVILVTGCYAELEADSIEKINKRIIAFSGKKKDELDGLPQFLK 121

Query: 131 QTYYRLPELLERARFGKR----VVDTDYSVEDKFERLSIVDGGYNRKRGV---------- 176
            +  +  +L E     K+      +  Y+ ED+ ++  ++     RK             
Sbjct: 122 DSCLKNKDLKEDTVNLKKNLLIFRNEIYAKEDQQDKSFLLKETERRKSMFKLSSPVFVFH 181

Query: 177 -TAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW 235
             A L IQ+GC+  C +C +   RG  +S    + V    ++  NG  E+ L G N++ +
Sbjct: 182 SRASLKIQDGCNNACAYCRIRLARGTSVSLPAEEAVRRIVQIEKNGAAEVVLSGVNLSQY 241

Query: 236 RGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPV 295
           R +   G    F++LL  L E    +RLR ++ +P  + D +++   +   + P+ HL +
Sbjct: 242 RDETYGG----FANLLAKLLENTKKIRLRISSMYPECVDDGILEIVAN-KRICPHFHLSI 296

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
           QSGSD+ILK+MNR +   + R  I+ +R  + +  I  D I GFP ET++DF  T  + +
Sbjct: 297 QSGSDKILKAMNRPYREADIRMAINNLRKAKDNPFIGCDIITGFPSETEEDFLQTFKMCE 356

Query: 356 KIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIE 415
            +       F +S R GT   +M  +V E     R   L +   +   S+  +C G++  
Sbjct: 357 DLKIPGIHVFPFSARPGTKAFSMRPKVPEREAGRRASLLSELSGKNYQSYLASCNGKLFF 416

Query: 416 VLIEKH-GKEKGKLVGRSPWL----QSVVLNSKNHNIGDIIKVRITDVKIS 461
            +IEK    E  ++V  +         V   ++N+  G+ + V I D    
Sbjct: 417 GVIEKPQNNEDLRIV--TENYLSLPLVVNKKAENYKGGEGLFVVIKDGNAY 465


>gi|254778988|ref|YP_003057093.1| putative MiaB-like tRNA modifying enzyme [Helicobacter pylori B38]
 gi|254000899|emb|CAX28835.1| Putative MiaB-like tRNA modifying enzyme [Helicobacter pylori B38]
          Length = 418

 Score =  247 bits (631), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 108/438 (24%), Positives = 202/438 (46%), Gaps = 30/438 (6%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ + K++GC+ N++D+  M +      +       +AD+IV+N+C +   A   V S+ 
Sbjct: 2   KKVYFKTFGCRTNLFDTQVMGENLKD--FSATLEEQEADIIVINSCTVTNGADSAVRSYA 59

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            ++  L            V+  GC  + +G+E+  +   +  V G     ++  LL+   
Sbjct: 60  KKMARLNKE---------VLFTGCGVKTQGKELFEK-GFLKGVFGHDNKEKINALLQE-- 107

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
             K+    D ++E+K    ++V     + R   AF+ IQEGCD  C +C++P  RG   S
Sbjct: 108 --KKRFFIDDNLENKHLDTTMVSEFVGKTR---AFIKIQEGCDFDCNYCIIPSVRGRARS 162

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
               +++++   L   GV E+ L G NV +  GK         + L+  LS+I GL R+R
Sbjct: 163 FEERKILEQVGLLCSKGVQEVVLTGTNVGS-YGKD---RGSNIARLIKKLSQIAGLKRIR 218

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
             +  P  ++D       + D L  +LH+ +Q   D +L+ MNRR+     R++++ I S
Sbjct: 219 IGSLEPNQINDE-FLELLEEDFLEKHLHIALQHSHDFMLERMNRRNRTKSDRELLETIAS 277

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
              + AI +DFIVG PGE+   F      ++ +       F YS R  TP S ML+ V  
Sbjct: 278 K--NFAIGTDFIVGHPGESGSVFEKAFKNLESLPLTHIHPFIYSKRKDTPSSLMLDSVSL 335

Query: 385 NVKAERLLCLQKKLREQQVSFNDAC--VGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
               +RL  ++  +  +  +F      +   ++ L+E   ++ G+      +   + + S
Sbjct: 336 EDSKKRLNAIKDLIFHKNKAFRQLQLKLNTPLKALVE--AQKDGEFKALDQFFNPIKIKS 393

Query: 443 KNHNIGDIIKVRITDVKI 460
                   ++++  ++K 
Sbjct: 394 DKPLRASFLEIKEYEIKE 411


>gi|308182459|ref|YP_003926586.1| hypothetical protein HPPC_01445 [Helicobacter pylori PeCan4]
 gi|308064644|gb|ADO06536.1| hypothetical protein HPPC_01445 [Helicobacter pylori PeCan4]
          Length = 418

 Score =  247 bits (630), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 108/438 (24%), Positives = 202/438 (46%), Gaps = 30/438 (6%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ + K++GC+ N++D+  M +      +       +AD+IV+N+C +   A   V S+ 
Sbjct: 2   KKVYFKTFGCRTNLFDTQVMGENLKD--FSATLEEQEADIIVINSCTVTNGADSAVRSYA 59

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            ++  L            V+  GC  + +G+E+  +   +  V G     ++  LL+   
Sbjct: 60  KKMARLNKE---------VLFTGCGVKTQGKELFEK-GFLKGVFGHDNKEKINALLQE-- 107

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
             K+    D ++E+K    ++V     + R   AF+ IQEGCD  C +C++P  RG   S
Sbjct: 108 --KKRFFIDDNLENKHLDTTMVSEFVGKTR---AFIKIQEGCDFDCNYCIIPSVRGRARS 162

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
               +++++   L   GV E+ L G NV +  GK         + L+  LS+I GL R+R
Sbjct: 163 FEERKILEQVGLLCSKGVQEVVLTGTNVGS-YGKD---RGSNIAQLIKKLSQITGLKRIR 218

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
             +  P  ++D       + D L  +LH+ +Q   D +L+ MNRR+     R++++ I S
Sbjct: 219 IGSLEPNQINDE-FLELLEEDFLEKHLHIALQHSHDFMLERMNRRNRTKSDRELLEVIAS 277

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
              + AI +DFIVG PGE++  F      ++ +       F YS R  TP S M + V  
Sbjct: 278 K--NFAIGTDFIVGHPGESESVFEKAFKNLESLPLTHIHPFIYSKRKDTPSSLMTDSVIL 335

Query: 385 NVKAERLLCLQKKLREQQVSFNDAC--VGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
               +RL  ++  +  +  +F      +   ++ L+E   ++ G+      +   + + S
Sbjct: 336 EDSKKRLNAIKDLILHKNRAFRQLQLKLNTPLKALVE--AQKDGEFKALDQFFNPIKIKS 393

Query: 443 KNHNIGDIIKVRITDVKI 460
                   +++R  ++K 
Sbjct: 394 DKPLRASFLEIRDYEIKE 411


>gi|317490536|ref|ZP_07949013.1| MiaB family RNA modification enzyme [Eggerthella sp. 1_3_56FAA]
 gi|316910351|gb|EFV31983.1| MiaB family RNA modification enzyme [Eggerthella sp. 1_3_56FAA]
          Length = 355

 Score =  247 bits (630), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 104/370 (28%), Positives = 163/370 (44%), Gaps = 34/370 (9%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           F V + GC++N  +S         +G E       ADLIV+NTC +  +A +K    + R
Sbjct: 10  FAVVNLGCKVNRVESDDAAARLALRGVE--TPEASADLIVVNTCTVTGEAEKKTRKAVRR 67

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
                   ++      V+V GC A  +          V+VV   Q    +  L + A F 
Sbjct: 68  A-------LRANDHARVLVTGCAAAIDAAFYEALDERVSVVGKAQLAQAIDALFDEAPFS 120

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
                         E   +  G   R R     + +Q+GCD  CT+C+V   RG   SR 
Sbjct: 121 ------------PGEDAPLHIGSGFRTR---VGVKVQDGCDNACTYCIVHVARGRATSRP 165

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG---------LDGEKCTFSDLLYSLSEI 257
              VV E       G  EI L G N+ ++   G             +    +     +  
Sbjct: 166 ADDVVRECAAYARAGAREIVLTGINLGSYCDGGRRDPSAIRLAALLRRLLDETADLHAPG 225

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLD-VLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           +   R R ++  PRD+ D L+      D  +  +LHLP+Q+GS ++L+ M R + A  + 
Sbjct: 226 EAPARFRVSSIEPRDVDDALVDLLASADGRVCRHLHLPLQAGSSKVLREMARPYDAERFV 285

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
            +++R+    P +A+S+D I GFPGETD +F+ T+D+     +A+  +F YSPR GTP +
Sbjct: 286 ALVERLYRRIPQLALSTDIIAGFPGETDAEFQETLDVARACRFAKIHAFPYSPRAGTPAA 345

Query: 377 NMLEQVDENV 386
              +QV   V
Sbjct: 346 ARADQVPPAV 355


>gi|108562712|ref|YP_627028.1| hypothetical protein HPAG1_0287 [Helicobacter pylori HPAG1]
 gi|107836485|gb|ABF84354.1| hypothetical protein HPAG1_0287 [Helicobacter pylori HPAG1]
          Length = 418

 Score =  247 bits (630), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 107/438 (24%), Positives = 201/438 (45%), Gaps = 30/438 (6%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ + K++GC+ N++D+  M +      +       +AD+IV+N+C +   A   V S+ 
Sbjct: 2   KKVYFKTFGCRTNLFDTQVMGENLKD--FSATLEEQEADIIVINSCTVTNGADSAVRSYA 59

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            ++  L            V+  GC  + +G+E+  +   +  V G     ++  LL+   
Sbjct: 60  KKMVRLNKE---------VLFTGCGVKTQGKELFEK-GFLKGVFGHDNKEKINALLQE-- 107

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
             K+    D ++E+K    ++V     + R   AF+ IQEGCD  C +C++P  RG   S
Sbjct: 108 --KKRFFIDDNLENKHLDTTMVSEFVGKTR---AFIKIQEGCDFDCNYCIIPSVRGRARS 162

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
               +++++   L   GV E+ L G NV +  GK         + L+  LS+I GL R+R
Sbjct: 163 FEERKILEQVGLLCSKGVQEVVLTGTNVGS-YGKD---RGSNIARLIKKLSQIAGLKRIR 218

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
             +  P  ++D       + D L  +LH+ +Q   D +L+ MNRR+     R++++ I S
Sbjct: 219 IGSLEPNQINDE-FLELLEEDFLEKHLHIALQHSHDFMLERMNRRNRTKSDRELLEVIAS 277

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
              + AI +DFIVG PGE++  F      ++ +       F YS R  TP S M + V  
Sbjct: 278 K--NFAIGTDFIVGHPGESESVFEKAFKNLESLPLTHIHPFIYSKRKDTPSSLMTDSVSL 335

Query: 385 NVKAERLLCLQKKLREQQVSFNDAC--VGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
               +RL  ++  +  +  +F      +   ++ L+E    + G+      +   + + S
Sbjct: 336 EDSKKRLNAIKDLILHKNKAFRQLQLKLNTPLKALVETQ--KDGEFKALDQFFNPIKIKS 393

Query: 443 KNHNIGDIIKVRITDVKI 460
                   ++++  ++K 
Sbjct: 394 DKPLRASFLEIKEYEIKE 411


>gi|109947136|ref|YP_664364.1| hypothetical protein Hac_0545 [Helicobacter acinonychis str.
           Sheeba]
 gi|109714357|emb|CAJ99365.1| conserved hypothetical protein [Helicobacter acinonychis str.
           Sheeba]
          Length = 418

 Score =  246 bits (629), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 107/438 (24%), Positives = 205/438 (46%), Gaps = 30/438 (6%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ + K++GC+ N++D+  M +      +      ++AD+I++N+C +   A   V S+ 
Sbjct: 2   KKVYFKTFGCRTNLFDTQVMGENLKD--FSATLEENEADIIIINSCTVTNGADSAVRSYA 59

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            ++  L            V+  GC  + +G+E+  +   +  V G     ++  LL+   
Sbjct: 60  KKMVRLNKE---------VLFTGCGVKTQGKELFEK-GFLKGVFGHDNKEKINTLLQE-- 107

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
             K+    D ++E+K    ++V     + R   AF+ IQEGCD  C +C++P  RG   S
Sbjct: 108 --KKRFFIDDNLENKHLDTTMVSEFVGKTR---AFIKIQEGCDFDCNYCIIPSVRGRARS 162

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
               +++++   L   GV E+ L G NV +  GK     +   + L+  LS+I GL R+R
Sbjct: 163 FEERKILEQVGLLCAKGVQEVVLTGTNVGS-YGKD---RESNIARLIKKLSQIVGLKRIR 218

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
             +  P  ++D       + D L  +LH+ +Q   D +L+ MNRR+     R++++ I S
Sbjct: 219 IGSLEPNQINDE-FLELLEEDFLEKHLHIALQHSHDFMLERMNRRNRVKSDRELLEVIAS 277

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
              + AI +DFIVG PGE++  F    + ++ +       F YS R  TP S M + V  
Sbjct: 278 K--NFAIGTDFIVGHPGESESVFEKAFENLEGLPLTHIHPFIYSKRKDTPSSLMHDSVSL 335

Query: 385 NVKAERLLCLQKKLREQQVSFNDACV--GQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
            V  +RL  ++  +  +   F    +     ++ L+E   ++ G+      +   + + S
Sbjct: 336 EVSKKRLNAIKDLIFHKNKVFRQLQLKRNTPLKALVE--AQKDGEFKALDQFFNPIKIKS 393

Query: 443 KNHNIGDIIKVRITDVKI 460
                   ++++  ++K 
Sbjct: 394 DKPLRASFLEIKEYEIKE 411


>gi|317008935|gb|ADU79515.1| putative MiaB-like tRNA modifying enzyme [Helicobacter pylori
           India7]
          Length = 418

 Score =  246 bits (629), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 106/438 (24%), Positives = 200/438 (45%), Gaps = 30/438 (6%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ + K++GC+ N++D+  M +      +       +AD+I++N+C +   A   V S+ 
Sbjct: 2   KKVYFKTFGCRTNLFDTQVMGENLKD--FSATLEEQEADIIIINSCTVTNGADSAVRSYA 59

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            ++  L            V+  GC  + +G+E+  +   +  V G     ++  LL+   
Sbjct: 60  KKMARLDKE---------VLFTGCGVKTQGKELFEK-GFLKGVFGHDNKEKINALLQE-- 107

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
             K+    D ++E+K    ++V     + R   AF+ IQEGCD  C +C++P  RG   S
Sbjct: 108 --KKRFFIDDNLENKHLDTTMVSEFVGKTR---AFIKIQEGCDFDCNYCIIPSVRGRARS 162

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
               +++++   L   GV E+ L G NV +  GK         + L+  LS+I GL R+R
Sbjct: 163 FEERKILEQVDLLCSKGVQEVVLTGTNVGS-YGKD---RGSNIARLIKKLSQIAGLKRIR 218

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
             +  P  ++D       + D L  +LH+ +Q   D +L+ MNRR+     R++++ I S
Sbjct: 219 IGSLEPNQINDE-FLELLEEDFLEKHLHIALQHSHDFMLERMNRRNRTKSDRELLEVIAS 277

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
              + AI +DFIVG PGE+   F      ++ +       F YS R  TP S M + V  
Sbjct: 278 K--NFAIGTDFIVGHPGESGSVFEEAFKNLESLPLTHIHPFIYSKRKDTPSSLMCDSVSL 335

Query: 385 NVKAERLLCLQKKLREQQVSFNDAC--VGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
               +RL  ++  +  +  +F      +   ++ L+E    + G+      +   + + S
Sbjct: 336 EDSKKRLNAIKDLISHKNKAFRQLQLRLNTPLKALVETQ--KDGEFKALDQFFNPIKIKS 393

Query: 443 KNHNIGDIIKVRITDVKI 460
                   ++++  ++K 
Sbjct: 394 DKPLRASFLEIKEYEIKE 411


>gi|291333787|gb|ADD93471.1| MiaB-like tRNA modifying enzyme YliG [uncultured marine bacterium
           MedDCM-OCT-S04-C123]
          Length = 424

 Score =  246 bits (629), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 100/371 (26%), Positives = 163/371 (43%), Gaps = 48/371 (12%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           + S GC  N+ DS  M       G    N++DDAD++V+NTC   + A E+    +    
Sbjct: 1   MISLGCAKNLVDSEIMLGHLMQAGMTITNNVDDADVVVVNTCSFIDSAQEESVDTILESS 60

Query: 89  NL-KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147
            L K   + +G    ++VAGC+ Q   +E+    P V+V +G     ++PE + +A   +
Sbjct: 61  ELSKAKHLGQG----LIVAGCLTQRYRKELPELLPEVDVFMGIDQVDQIPEFVRQAHKHR 116

Query: 148 RV----------VDTDYSVEDKFERLSIVD-------------GGYNRKRGVTAFLTIQE 184
                          D +  +  E L ++D               +       A+L I E
Sbjct: 117 EKKISHEENAGKSSDDAATNESEEMLPVLDVTARPNYIPDYTTPRFRLTPQHFAYLKIAE 176

Query: 185 GCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK 244
           GC+  C+FC++P  RG   SR    +V EA+ ++ +G+ EI L+ Q+   +     +  K
Sbjct: 177 GCNHPCSFCIIPRMRGSHRSRRPEDIVQEAKAMVRDGIKEINLISQDSTYYGMDLRENHK 236

Query: 245 C--------------------TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL 284
                                T S LL  L+ I+G   +R   +HP   +D LI+     
Sbjct: 237 RNIASPQKFKEASEALPEDASTLSSLLRQLNAIEGDFWIRILYTHPAHWTDELIQTIAKC 296

Query: 285 DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETD 344
             +  Y+ +P+Q     +L+ M R  +     ++I RIR   P+IAI + FIVGFPGET+
Sbjct: 297 KKVAKYVDIPLQHIHSTMLERMRRETSREYIEELIQRIREGIPNIAIRTTFIVGFPGETE 356

Query: 345 DDFRATMDLVD 355
             F +   L  
Sbjct: 357 GAFESLKHLFR 367


>gi|217032136|ref|ZP_03437635.1| hypothetical protein HPB128_186g2 [Helicobacter pylori B128]
 gi|216946126|gb|EEC24735.1| hypothetical protein HPB128_186g2 [Helicobacter pylori B128]
          Length = 354

 Score =  246 bits (628), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 80/356 (22%), Positives = 155/356 (43%), Gaps = 20/356 (5%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++  + S GC  N+ DS  M        Y   N    AD+I++NTC   E A ++    +
Sbjct: 7   KQLCLISLGCSKNLVDSEVMLGKL--YNYTLTNDAKKADVILINTCGFIESAKQESIQTI 64

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
                 K          +++ +GC+++   +EI    P V++  G   Y ++  ++  A+
Sbjct: 65  LNAAKDKKE------GAILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMI--AK 116

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
              +  +  +  E    R+            V A++ I EGC++ C+FC +P  +G   S
Sbjct: 117 KQNQFSEQVFLSEHYNARI-------ITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQS 169

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R L  ++ E   L   G  ++T + Q+ +++      G+K     L+ ++ + + L   R
Sbjct: 170 RELDSILKEVEDLALKGYKDMTFIAQDSSSFLYD--KGQKDGLIQLIRAIDKQQALKSAR 227

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
               +P   +  LI A     +   Y  +P+Q  SD +LK M R  +   + +++D ++ 
Sbjct: 228 ILYLYPSSTTLELIGAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQ 287

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           V+    I S  IVG P E + +F      +D+  + +   F +S    T   ++ +
Sbjct: 288 VKESF-IRSTIIVGHPEENEGEFEELSAFLDEFRFDRLNIFAFSAEENTHAYSLEK 342


>gi|261839141|gb|ACX98906.1| hypothetical protein HPKB_0296 [Helicobacter pylori 52]
          Length = 418

 Score =  246 bits (628), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 107/438 (24%), Positives = 203/438 (46%), Gaps = 30/438 (6%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ + K++GC+ N++D+  M +      +       +AD+I++N+C +   A   V S+ 
Sbjct: 2   KKVYFKTFGCRTNLFDTQVMGENLKD--FSATLEEQEADIIIINSCTVTNGADSAVRSYA 59

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            ++  L            V+  GC  + +G+E+  +   +  V G     ++  LL+   
Sbjct: 60  KKMARLNKE---------VLFTGCGVKTQGKELFEK-GFLKGVFGHDNKEKINVLLQE-- 107

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
             K+    D ++E+K    ++V     + R   AF+ IQEGCD  C +C++P  RG   S
Sbjct: 108 --KKRFFIDDNLENKHLDTTMVSEFVGKTR---AFIKIQEGCDFDCNYCIIPSVRGRARS 162

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
               +++++   L   GV E+ L G NV +  GK    +    + L+  LS+I GL R+R
Sbjct: 163 FEERKILEQVGLLCSKGVQEVVLTGTNVGS-YGKD---KGSNIARLIKKLSQIAGLKRIR 218

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
             +  P  ++D       + D L  +LH+ +Q   D +L+ MNRR+ A   R++++ I S
Sbjct: 219 IGSLEPNQINDE-FLELLEEDFLEKHLHIALQHSHDFMLERMNRRNRAKSDRELLEVIAS 277

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
              + AI +DFIVG PGE+   F      ++ +       F YS R  TP S M + V  
Sbjct: 278 K--NFAIGTDFIVGHPGESGSVFEEAFKNLESLPLTHIHPFIYSKRKDTPSSLMTDSVSL 335

Query: 385 NVKAERLLCLQKKLREQQVSFNDAC--VGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
               +RL  ++  +  +  +F      +   ++ L+E   ++ G+      +   + + S
Sbjct: 336 EDSKKRLNAIKDLIFHKNKAFRQLQLKLNTPLKALVE--AQKDGEFKALDQFFNPIKIKS 393

Query: 443 KNHNIGDIIKVRITDVKI 460
                   ++++  ++K 
Sbjct: 394 DKPLRASFLEIKEYEIKE 411


>gi|15611340|ref|NP_222991.1| hypothetical protein jhp0270 [Helicobacter pylori J99]
 gi|11387381|sp|Q9ZMF0|Y285_HELPJ RecName: Full=Putative methylthiotransferase jhp_0270
 gi|4154794|gb|AAD05851.1| putative [Helicobacter pylori J99]
          Length = 418

 Score =  246 bits (628), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 105/438 (23%), Positives = 202/438 (46%), Gaps = 30/438 (6%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ + K++GC+ N++D+  M +      +       +AD+I++N+C +       V S+ 
Sbjct: 2   KKVYFKTFGCRTNLFDTQVMGENLKD--FSATLEEQEADIIIINSCTVTNGTDSAVRSYA 59

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            ++  L            V+  GC  + +G+E+  +  ++  V G     ++  LL+   
Sbjct: 60  RKMARLDKE---------VLFTGCGVKTQGKELFEK-GLLKGVFGHDNKEKINALLQE-- 107

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
             K+    D ++E+K    ++V     + R   AF+ IQEGCD  C +C++P  RG   S
Sbjct: 108 --KKRFFIDDNLENKHLDTTMVSEFVGKTR---AFIKIQEGCDFDCNYCIIPSVRGRARS 162

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
               +++++   L   GV E+ L G NV +  GK         + L+  LS+I GL R+R
Sbjct: 163 FEERKILEQVGLLCSKGVQEVVLTGTNVGS-YGKD---RGSNIARLIKKLSQITGLKRIR 218

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
             +  P  ++D       + D L  +LH+ +Q   D +L+ MNRR+     R++++ I S
Sbjct: 219 IGSLEPNQINDE-FLELLEEDFLEKHLHIALQHSHDFMLERMNRRNRTKSDRELLEIIAS 277

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
              + AI +DFIVG PGE++  F      ++ +       F YS R  TP S M + V  
Sbjct: 278 K--NFAIGTDFIVGHPGESESVFEKAFKNLESLPLTHIHPFIYSKRKDTPSSLMRDSVSL 335

Query: 385 NVKAERLLCLQKKLREQQVSFNDAC--VGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
               +RL  ++  +  +  +F      +   ++ L+E   ++ G+      +   + + S
Sbjct: 336 EDSKKRLNAIKDLIFHKNKAFRQLQLKLNTPLKALVE--AQKDGEFKALDQFFNPIKIKS 393

Query: 443 KNHNIGDIIKVRITDVKI 460
                   ++++  ++K 
Sbjct: 394 DKPLRASFLEIKEYEIKE 411


>gi|297379507|gb|ADI34394.1| RNA modification enzyme, MiaB family [Helicobacter pylori v225d]
          Length = 418

 Score =  246 bits (628), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 107/438 (24%), Positives = 202/438 (46%), Gaps = 30/438 (6%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ + K++GC+ N++D+  M +      +       +AD+I++N+C +   A   V S+ 
Sbjct: 2   KKVYFKTFGCRTNLFDTQVMGENLKD--FSATLEEQEADIIIINSCTVTNGADSAVRSYA 59

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            ++  L            V+  GC  + +G+E+  +   +  V G     ++  LL+   
Sbjct: 60  KKMARLNKE---------VLFTGCGVKTQGKELFEK-GFLKGVFGHDNKEKINTLLQE-- 107

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
             K+    D ++E+K    ++V     + R   AF+ IQEGCD  C +C++P  RG   S
Sbjct: 108 --KKRFFIDDNLENKHLDTTMVSEFVGKTR---AFIKIQEGCDFDCNYCIIPSVRGRARS 162

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
               +++++   L   GV E+ L G NV +  GK    +    + L+  LS+I GL R+R
Sbjct: 163 FEERKILEQVGLLCSKGVQEVVLTGTNVGS-YGKD---KGSNIARLIKKLSQITGLKRIR 218

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
             +  P  ++D       + D L  +LH+ +Q   D +L+ MNRR+     R++++ I S
Sbjct: 219 IGSLEPNQINDE-FLELLEEDFLEKHLHIALQHSHDFMLERMNRRNRTKSDRKLLEVIAS 277

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
              + AI +DFIVG PGE+   F      ++ +       F YS R  TP S M + V  
Sbjct: 278 K--NFAIGTDFIVGHPGESGSVFEEAFKNLESLPLTHIHPFIYSKRKDTPSSLMTDSVSL 335

Query: 385 NVKAERLLCLQKKLREQQVSFNDAC--VGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
               +RL  ++  +  +  +F      +   ++ L+E   ++ G+      +   + + S
Sbjct: 336 EDSKKRLNAIKDLILHKNKAFRQLQLKLNTPLKALVE--AQKDGEFKALDQFFNPIKIKS 393

Query: 443 KNHNIGDIIKVRITDVKI 460
                   +++R  ++K 
Sbjct: 394 DKPLRASFLEIRDYEIKE 411


>gi|323455423|gb|EGB11291.1| hypothetical protein AURANDRAFT_1140 [Aureococcus anophagefferens]
          Length = 446

 Score =  246 bits (627), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 113/462 (24%), Positives = 199/462 (43%), Gaps = 40/462 (8%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNS---MDDADLIVLNTCHIREKAAEKVY 81
           +R +V+++GC  NV DS  M  +  S+GYE        D AD  V+N+C +++ +     
Sbjct: 7   KRVYVRTFGCSHNVSDSEYMCGLLASEGYEVSTDRADADAADAWVVNSCTVKDPS----- 61

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAE----GEEILRRSPIVNVV--VGPQTYYR 135
               +   +K  R        VVV+GC+ Q E     ++  R+ P ++    VG +   R
Sbjct: 62  ----QAAFMKEVRRGMKDGKAVVVSGCIPQGERGLVKKQGGRKPPELDGASSVGIKQIGR 117

Query: 136 LPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
           + E +  A  G+               L  ++    R   +   + +  GC   C +C  
Sbjct: 118 VNEAVAAALRGETFHALGSGP------LPSLELPKVRANALVEIVPLSSGCLGACAYCKT 171

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
            + RG   S +L+ +V      + +GV E+ L  ++  A  G  L     +   LL +L 
Sbjct: 172 RHARGALGSYALADIVARVDGALADGVGEVWLSSEDTGA-YGIDL---GTSLGALLEALL 227

Query: 256 EI-----KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL--KSMNR 308
            +      G++R+  T          ++    +   +  +LH+PVQSGSD +L    MNR
Sbjct: 228 PVLEAHPHGMLRVGMTNPPYVLDQLEVLGRCLNHAQVYAFLHVPVQSGSDAVLAKDRMNR 287

Query: 309 RHTAYEYRQIIDRIRSVRPD-IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
            +T  ++R ++D + +     +++ +D I GFPGETDDDF AT  LV+   +      ++
Sbjct: 288 EYTVADFRAVVDGLAARVDGGLSLMTDVICGFPGETDDDFDATYALVEDYAFGLINISQF 347

Query: 368 SPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG- 426
             R GTP ++M ++V      +R   L      Q     D  VG ++         + G 
Sbjct: 348 YARPGTPAASM-KRVHTATVKDRSRRLSAL--TQTFRPYDGLVGTVVACAAHAEVADGGA 404

Query: 427 KLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           +LV  +     V++      +G   +VRI       + G ++
Sbjct: 405 RLVCHTKTYAKVLVPFDRSLVGARFEVRIGAAHRWHVDGVVL 446


>gi|317180090|dbj|BAJ57876.1| hypothetical protein HPF32_0294 [Helicobacter pylori F32]
          Length = 418

 Score =  246 bits (627), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 106/438 (24%), Positives = 203/438 (46%), Gaps = 30/438 (6%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ + K++GC+ N++D+  M +      +       +AD+I++N+C +   A   V S+ 
Sbjct: 2   KKVYFKTFGCRTNLFDTQVMGENLKD--FSMTLEEQEADIIIINSCTVTNGADSAVRSYA 59

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            ++  L            V+  GC  + +G+E+  +   +  V G     ++  LL+   
Sbjct: 60  KKMARLNKE---------VLFTGCGVKTQGKELFEK-GFLKGVFGHDNKEKINALLQE-- 107

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
             K+    D ++E+K    ++V     + R   AF+ IQEGCD  C +C++P  RG   S
Sbjct: 108 --KKRFFIDDNLENKHLDTTMVSEFVGKTR---AFIKIQEGCDFDCNYCIIPSVRGRARS 162

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
               +++++   L   GV E+ L G NV +  GK    +    + L+  LS+I GL R+R
Sbjct: 163 FEERKILEQVGLLCSKGVQEVVLTGTNVGS-YGKD---KGSNIARLIKKLSQIAGLKRIR 218

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
             +  P  ++D       + D L  +LH+ +Q   D +L+ MNRR+ A   R++++ I S
Sbjct: 219 IGSLEPNQINDE-FLELLEEDFLEKHLHIALQHSHDFMLEKMNRRNRAKSDRELLEAIAS 277

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
              + AI +DFIVG PGE+   F+     ++ +       F Y+ R  TP S M + V  
Sbjct: 278 K--NFAIGTDFIVGHPGESGSVFKEAFKNLESLPLTHIHPFIYNKRKDTPSSLMTDSVSL 335

Query: 385 NVKAERLLCLQKKLREQQVSFNDAC--VGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
               +RL  ++  +  +  +F      +   ++ L+E    + G+      +   + + S
Sbjct: 336 EDSKKRLNAIKDLILHKNKAFRQLQLKLNTPLKALVETQ--KDGEFKALDQFFNPIKIKS 393

Query: 443 KNHNIGDIIKVRITDVKI 460
                   ++++  ++K 
Sbjct: 394 DKPLRASFLEIKEYEIKE 411


>gi|257456539|ref|ZP_05621735.1| conserved hypothetical protein [Treponema vincentii ATCC 35580]
 gi|257446199|gb|EEV21246.1| conserved hypothetical protein [Treponema vincentii ATCC 35580]
          Length = 498

 Score =  245 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 112/492 (22%), Positives = 199/492 (40%), Gaps = 80/492 (16%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYER------------------------VNSMDDADL 64
           +++ GC++N  ++     +    G+                              +   L
Sbjct: 10  IETLGCRLNQAEAESFAALCIDAGFSIYTGHTDYAGFSPVNITETPIRLYAAVPPEQTAL 69

Query: 65  IVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIV 124
             +NTC +  KA +K        R L    IKE    +++V GC AQ E  EI    P V
Sbjct: 70  CFVNTCTVTGKAEQK-------ARRLIRLLIKEHPYAVILVTGCYAQLEAAEIEALHPHV 122

Query: 125 NVVVGPQTY--YRLPELLERARFGKRVVDTDY----------------SVEDKFERLSIV 166
               G Q      +P        G    DT +                  ++      + 
Sbjct: 123 LAFPGQQKDLLTAIPAYFAELVRGSAYFDTAFFLSALRTYLSGLTGRIPQDEPRHHKPVG 182

Query: 167 D---GGYNRKR-----------GVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVD 212
           D    G  RK               A L IQ+GC+  C +C +   RG  +S   ++V++
Sbjct: 183 DQSGHGIQRKPLFALSSPHFLFHSRALLKIQDGCNDACAYCRIRLARGKSVSLPAAEVLE 242

Query: 213 EARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
             R + + GV E+TL G N++ +R +  D     F+ +L  + E    +R+R ++ +P  
Sbjct: 243 RLRCIEETGVPEVTLTGVNLSQYRSEAGD-----FAGILKLILE-NSTIRVRISSLYPDR 296

Query: 273 MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAIS 332
           + + L+        + P+ HL VQSGSD +LK+M+R +        +  +R V+ D  I 
Sbjct: 297 IDEALVPLLA-HPRICPHFHLSVQSGSDAVLKTMHRGYKNTTVYHAVSELRRVKGDPFIG 355

Query: 333 SDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLL 392
           +D I GFPGET+ DF  T  +  ++ +A   +F +S R GT    M  +V E +  +R+ 
Sbjct: 356 ADIITGFPGETEADFEETYRMCRELNFAGIHAFPFSARPGTEAWKMQPKVPERIAGQRVK 415

Query: 393 CLQKKLREQQVSFNDACVGQ-IIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNI---- 447
            L +    Q  ++     G+ +  V         G++   +    S+ L  ++ +     
Sbjct: 416 KLNELAETQAAAYLHGWDGKFVYGV---TEAPRNGRITVITENYLSLPLIKESLSSEVVL 472

Query: 448 --GDIIKVRITD 457
             G+ ++V++ +
Sbjct: 473 LGGEYVRVQVQE 484


>gi|188527091|ref|YP_001909778.1| hypothetical protein HPSH_01480 [Helicobacter pylori Shi470]
 gi|188143331|gb|ACD47748.1| hypothetical protein HPSH_01480 [Helicobacter pylori Shi470]
          Length = 418

 Score =  245 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 107/438 (24%), Positives = 202/438 (46%), Gaps = 30/438 (6%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ + K++GC+ N++D+  M +      +       +AD+I++N+C +   A   V S+ 
Sbjct: 2   KKVYFKTFGCRTNLFDTQVMGENLKD--FSATLEEQEADIIIINSCTVTNGADSAVRSYA 59

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            ++  L            V+  GC  + +G+E+  +   +  V G     ++  LL+   
Sbjct: 60  KKMARLNKE---------VLFTGCGVKTQGKELFEK-GFLKGVFGHDNKEKINALLQE-- 107

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
             K+    D ++E+K    ++V     + R   AF+ IQEGCD  C +C++P  RG   S
Sbjct: 108 --KKRFFIDDNLENKHLDTTMVSEFVGKTR---AFIKIQEGCDFDCNYCIIPSVRGRARS 162

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
               +++++   L   GV E+ L G NV +  GK    +    + L+  LS+I GL R+R
Sbjct: 163 FEERKILEQVGLLCSKGVQEVVLTGTNVGS-YGKD---KGSNIARLIKKLSQITGLKRIR 218

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
             +  P  ++D       + D L  +LH+ +Q   D +L+ MNRR+     R++++ I S
Sbjct: 219 IGSLEPNQINDE-FLELLEEDFLEKHLHIALQHSHDFMLEKMNRRNRTKSDRELLEVIAS 277

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
              + AI +DFIVG PGE+   F      ++ +       F YS R  TP S M + V  
Sbjct: 278 K--NFAIGTDFIVGHPGESGSVFEEAFKNLESLPLTHIHPFIYSKRKDTPSSLMTDSVIL 335

Query: 385 NVKAERLLCLQKKLREQQVSFNDAC--VGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
               +RL  ++  +  +  +F      +   ++ L+E   ++ G+      +   + + S
Sbjct: 336 EDSKKRLNAIKDLILHKNKAFRQLQLKLNTPLKALVE--AQKDGEFKALDQFFNPIKIKS 393

Query: 443 KNHNIGDIIKVRITDVKI 460
                   +++R  ++K 
Sbjct: 394 DKPLRASFLEIRDYEIKE 411


>gi|288920752|ref|ZP_06415052.1| RNA modification enzyme, MiaB family [Frankia sp. EUN1f]
 gi|288347828|gb|EFC82105.1| RNA modification enzyme, MiaB family [Frankia sp. EUN1f]
          Length = 337

 Score =  245 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 106/276 (38%), Positives = 154/276 (55%), Gaps = 13/276 (4%)

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           E  R    V+ E   L+  G  EITLLGQNVN+  G+ L G+   F+ LL +   I+GL 
Sbjct: 1   ERDRRPGDVLAEVEALVAEGALEITLLGQNVNS-YGRSL-GDPGAFARLLRACGNIEGLE 58

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R+R+T+ HPRD +D +I+A      + P LH+P+QSGSD +L+ M R +    +  I++R
Sbjct: 59  RVRFTSPHPRDFTDDVIEAMAQTPNVCPQLHMPLQSGSDAVLRRMRRSYRRERFLGIVER 118

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R   P  AI++D IVGFPGET++DF  T+D+V    +A AF+FKYSPR GTP + M   
Sbjct: 119 VREAIPHAAITTDIIVGFPGETEEDFADTLDVVRAARFAGAFTFKYSPRPGTPAAEMDGA 178

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEK---GKLVGRSPWLQS 437
           VD  V +ER   L     E   + N A VG+ +E+L+ E  G++    G+L GR+   + 
Sbjct: 179 VDPAVVSERYERLASLQDEMSWAENRAQVGRRVEILVSEGEGRKDSETGRLSGRARDGRL 238

Query: 438 VVL-------NSKNHNIGDIIKVRITDVKISTLYGE 466
           V L              GD+I+  +T      L  +
Sbjct: 239 VHLLVTGPHAQDGVVRPGDVIETVVTRGAPHHLTAD 274


>gi|289606980|emb|CBI60926.1| unnamed protein product [Sordaria macrospora]
          Length = 315

 Score =  244 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 96/339 (28%), Positives = 154/339 (45%), Gaps = 33/339 (9%)

Query: 55  RVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG 114
                  AD++++NTC   + A E+    +G              +  V+V GC+ Q E 
Sbjct: 1   MSPDYAGADVVLVNTCGFLDSAKEESLEAIGEA---------IAENGRVIVTGCMGQ-EA 50

Query: 115 EEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKR 174
           E I  R P V  V G   Y ++ + +  A            +   F  L + + G     
Sbjct: 51  ETIRARFPQVLAVTGAHQYEQVVDAVHEAAP---------PIPSPFVDL-VPESGLKLTP 100

Query: 175 GVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA 234
              ++L I EGC+  C+FC++P  RG  +SR    ++ EA KL+  G  E+ ++ Q+ +A
Sbjct: 101 RHYSYLKISEGCNHRCSFCIIPSIRGDLVSRRPDAILREAEKLVAAGTKELLVISQDTSA 160

Query: 235 WRGKGLDGEK---------CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLD 285
             G  +  E             +DL   L  I   VRL Y   +P   S   + A G   
Sbjct: 161 -YGIDIRRESRAWKGREVVPHMTDLARELGRIAPWVRLHYVYPYPNVDSIIPLMAEG--- 216

Query: 286 VLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDD 345
           +++PYL +P Q  S  +LK+M R     +  + +   R V PDIAI S F+VGFPGET+ 
Sbjct: 217 LVLPYLDIPFQHASPNVLKAMKRPANDAKVLERLRGWREVCPDIAIRSSFVVGFPGETEA 276

Query: 346 DFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           DF+  +D +D+    +  +F++ P  G   + + + V E
Sbjct: 277 DFQYLLDWLDEAQLDRVGAFRFEPVEGAAANALPDPVPE 315


>gi|15644913|ref|NP_207083.1| hypothetical protein HP0285 [Helicobacter pylori 26695]
 gi|2501536|sp|P56130|Y285_HELPY RecName: Full=Putative methylthiotransferase HP_0285
 gi|2313381|gb|AAD07353.1| conserved hypothetical protein [Helicobacter pylori 26695]
          Length = 418

 Score =  244 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 106/438 (24%), Positives = 201/438 (45%), Gaps = 30/438 (6%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ + K++GC+ N++D+  M +      +       +AD+I++N+C +   A   V S+ 
Sbjct: 2   KKVYFKTFGCRTNLFDTQVMSENLKD--FSTTLEEQEADIIIINSCTVTNGADSAVRSYA 59

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            ++  L            V+  GC  + +G+E+  +   +  V G     ++  LL+   
Sbjct: 60  KKMARLDKE---------VLFTGCGVKTQGKELFEK-GFLKGVFGHDNKEKINALLQE-- 107

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
             K+    D ++E+K    ++V     + R   AF+ IQEGCD  C +C++P  RG   S
Sbjct: 108 --KKRFFIDDNLENKHLDTTMVSEFVGKTR---AFIKIQEGCDFDCNYCIIPSVRGRARS 162

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
               +++++   L   GV E+ L G NV +  GK         + L+  LS+I GL R+R
Sbjct: 163 FEERKILEQVGLLCSKGVQEVVLTGTNVGS-YGKD---RGSNIARLIKKLSQIAGLKRIR 218

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
             +  P  ++D       + D L  +LH+ +Q   D +L+ MNRR+     R++++ I S
Sbjct: 219 IGSLEPNQINDE-FLELLEEDFLEKHLHIALQHSHDLMLERMNRRNRTKSDRELLETIAS 277

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
              + AI +DFIVG PGE+   F      ++ +       F YS R  TP S M + V  
Sbjct: 278 K--NFAIGTDFIVGHPGESGSVFEKAFKNLESLPLTHIHPFIYSKRKDTPSSLMTDSVSL 335

Query: 385 NVKAERLLCLQKKLREQQVSFNDAC--VGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
               +RL  ++  +  +  +F      +   ++ L+E   ++ G+      +   + + S
Sbjct: 336 EDSKKRLNAIKDLIFHKNKAFRQLQLKLNTPLKALVE--VQKDGEFKALDQFFNPIKIKS 393

Query: 443 KNHNIGDIIKVRITDVKI 460
                   ++++  ++K 
Sbjct: 394 DKPLRASFLEIKEYEIKE 411


>gi|308061638|gb|ADO03526.1| hypothetical protein HPCU_01755 [Helicobacter pylori Cuz20]
          Length = 418

 Score =  244 bits (623), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 107/438 (24%), Positives = 201/438 (45%), Gaps = 30/438 (6%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ + K++GC+ N++D+  M +      +       +AD+I++N+C +   A   V S+ 
Sbjct: 2   KKVYFKTFGCRTNLFDTQVMGENLKD--FSATLEEQEADIIIINSCTVTNGADSAVRSYA 59

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            ++  L            V+  GC  + +G+E+  +   +  V G     ++  LL+   
Sbjct: 60  KKMARLNKE---------VLFTGCGVKTQGKELFEK-GFLKGVFGHDNKEKINALLQE-- 107

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
             K+    D ++E+K    ++V     + R   AF+ IQEGCD  C +C++P  RG   S
Sbjct: 108 --KKRFFIDDNLENKHLDTTMVSEFVGKTR---AFIKIQEGCDFDCNYCIIPSVRGRARS 162

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
               +++++   L   GV E+ L G NV +  GK         + L+  LS+I GL R+R
Sbjct: 163 FEERKILEQVGLLCSKGVQEVVLTGTNVGS-YGKD---RGSNIARLIKKLSQIAGLKRIR 218

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
             +  P  ++D       + D L  +LH+ +Q   D +L+ MNRR+     R++++ I S
Sbjct: 219 IGSLEPNQINDE-FLELLEEDFLEKHLHIALQHSHDFMLEKMNRRNRIKSDRELLEIIAS 277

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
              + AI +DFIVG PGE+   F      ++ +       F YS R  TP S M + V  
Sbjct: 278 K--NFAIGTDFIVGHPGESGSVFEEAFKNLESLPLTHIHPFIYSKRKDTPSSLMTDSVIL 335

Query: 385 NVKAERLLCLQKKLREQQVSFNDAC--VGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
               +RL  ++  +  +  +F      +   ++ L+E   ++ G+      +   + + S
Sbjct: 336 EDSKKRLNAIKDLISHKNKAFRQLQLKLNTPLKALVE--VQKDGEFKALDQFFNPIKIKS 393

Query: 443 KNHNIGDIIKVRITDVKI 460
                   +++R  ++K 
Sbjct: 394 DKPLRASFLEIRDYEIKE 411


>gi|308063147|gb|ADO05034.1| hypothetical protein HPSAT_01425 [Helicobacter pylori Sat464]
          Length = 418

 Score =  244 bits (623), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 107/438 (24%), Positives = 201/438 (45%), Gaps = 30/438 (6%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ + K++GC+ N++D+  M +      +       +AD+I++N+C +   A   V S+ 
Sbjct: 2   KKVYFKTFGCRTNLFDTQVMGENLKD--FSATLEEQEADIIIINSCTVTNGADSAVRSYA 59

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            ++  L            V+  GC  + +G+E+  +   +  V G     ++  LL+   
Sbjct: 60  KKMARLNKE---------VLFTGCGVKTQGKELFEK-GFLKGVFGHDNKEKINALLQE-- 107

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
             K+    D ++E+K    ++V     + R   AF+ IQEGCD  C +C++P  RG   S
Sbjct: 108 --KKRFFIDDNLENKHLDTTMVSEFVGKTR---AFIKIQEGCDFDCNYCIIPSVRGRARS 162

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
               +++++   L   GV E+ L G NV +  GK         + L+  LS+I GL R+R
Sbjct: 163 FEERKILEQVGLLCSKGVQEVVLTGTNVGS-YGKD---RGSNIARLIKKLSQITGLKRIR 218

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
             +  P  ++D       + D L  +LH+ +Q   D +L+ MNRR+     R++++ I S
Sbjct: 219 IGSLEPNQINDE-FLELLEEDFLEKHLHIALQHSHDFMLERMNRRNRTKSDRELLEIIAS 277

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
              + AI +DFIVG PGE+   F      ++ +       F YS R  TP S M + V  
Sbjct: 278 K--NFAIGTDFIVGHPGESGSVFEEAFKNLESLPLTHIHPFIYSKRKDTPSSLMTDSVIL 335

Query: 385 NVKAERLLCLQKKLREQQVSFNDAC--VGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
               +RL  ++  +  +  +F      +   ++ L+E   ++ G+      +   + + S
Sbjct: 336 EDSKKRLNAIKDLILYKNKAFRQLQLKLNTPLKALVE--AQKDGEFKALDQFFNPIKIKS 393

Query: 443 KNHNIGDIIKVRITDVKI 460
                   +++R  ++K 
Sbjct: 394 DKPLRASFLEIRDYEIKE 411


>gi|16081399|ref|NP_393736.1| hypothetical protein Ta0256 [Thermoplasma acidophilum DSM 1728]
 gi|10639399|emb|CAC11401.1| hypothetical protein [Thermoplasma acidophilum]
          Length = 401

 Score =  244 bits (622), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 116/446 (26%), Positives = 200/446 (44%), Gaps = 50/446 (11%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + + + YGC +N  ++    +   S+G   V+  D+AD+ ++ TC + +K  + +   + 
Sbjct: 2   KIYYEGYGCTLNQGETGLYVNKLLSEGSVLVSRPDEADISIIGTCAVIQKTEDHMLKRIE 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +  L            V V GC++  +G EI                    E ++R  F
Sbjct: 62  ELSRL----------GRVKVIGCLSAIKGSEI---------------SGGNIEAIDRNEF 96

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            +         ++  E  SI+D        + + + I +GC   C FC+    RG  +SR
Sbjct: 97  QQ--------FQEYLEDTSIIDAE------IMSGIPINQGCTGKCNFCISHIARGKLVSR 142

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
              ++V++ R ++  G  EI +   +  A  GK           L+  ++ + G   LR 
Sbjct: 143 RPEKIVNQIRMMVAAGKREIRISSLDTAA-YGKDT---GYRLPSLIKDITAVDGDFMLRV 198

Query: 266 TTSHP---RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
               P    ++ D L++A+ D   +  +LH+PVQSG DR+L +MNR +T  E+ QII+  
Sbjct: 199 GMMEPRNTIEILDDLLEAY-DDPKVFKFLHIPVQSGDDRVLTAMNREYTVDEFMQIIESF 257

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R   PD+ IS+D I+G+  E D  F  T DL+ K+        ++SPR  TP      + 
Sbjct: 258 RKRFPDMTISTDVIIGYHAENDRSFDLTCDLIRKVQPEIINVTRFSPRELTPDFEHRPR- 316

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
             NV  ++   + +  R+       A VG++  +LI + GK  G +VGR    + VV+ +
Sbjct: 317 PTNVLKDQDRTMAEIHRKIVSERFSALVGKVERILITEDGK-PGTMVGRDASYRPVVIRA 375

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
                      RI   + ++L GELV
Sbjct: 376 PAEKY-TWHSARIIGYENTSLIGELV 400


>gi|103488208|ref|YP_617769.1| MiaB-like tRNA modifying enzyme [Sphingopyxis alaskensis RB2256]
 gi|98978285|gb|ABF54436.1| MiaB-like tRNA modifying enzyme [Sphingopyxis alaskensis RB2256]
          Length = 441

 Score =  243 bits (621), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 118/455 (25%), Positives = 196/455 (43%), Gaps = 46/455 (10%)

Query: 13  MVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHI 72
           M +++ D      R  V ++GC++N+ +   +     + G          D+IV+N+C +
Sbjct: 1   MNAELAD------RVEVVNFGCRLNIAEGEAIRAAVKAAGAR--------DMIVVNSCAV 46

Query: 73  REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRR-----SPIVNVV 127
            ++A  +    + R        ++E  D  VVV GC A+ E               V  +
Sbjct: 47  TDEAVRQARQAVRRA-------LRERPDAEVVVTGCAAELEAGRFAAMGARVVRNDVKGL 99

Query: 128 VG-------PQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFL 180
           +G       P+    + + LE A  G          +D F  +       +      AFL
Sbjct: 100 IGSYGNTVSPRRREPISDGLEMAPAGDGPP-PSRGNKDFFSGVRPFTPALSGADHARAFL 158

Query: 181 TIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL 240
            +Q GC   CTFC     RG   S ++  VVD AR  +  G  EI L G ++ A  G   
Sbjct: 159 GVQTGCSHSCTFCATVLARGAARSATVETVVDAARTALGRGQREIILTGVDL-ASYGDDS 217

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300
                   + L +      + RLR ++  P  + + L         +MP++HL +Q+G D
Sbjct: 218 GTSLAALVEALLA----LPVERLRLSSLDPDRIDERLFALLTGESRVMPHVHLSLQAGDD 273

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
            +L  M RRH   +  ++I+R+++ R +IAI +D I GFP E +  F  ++ L+D     
Sbjct: 274 MVLTRMKRRHRRADAVRLIERLKAARAEIAIGADLIAGFPTEDEAMFANSLALIDDCDVV 333

Query: 361 QAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
               F YSPR GTP + M  QV   +  ER   L++    ++  + D  VG+   +L+E+
Sbjct: 334 FGHIFPYSPRAGTPAARMP-QVGRAIARERAAMLREANARRRRDWLDTQVGRTAAMLVER 392

Query: 421 HGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRI 455
            GK      G +    + +  +     G II VR+
Sbjct: 393 DGK-----TGHAENFAA-LTLTAPAAPGTIIDVRL 421


>gi|317012127|gb|ADU82735.1| hypothetical protein HPLT_01465 [Helicobacter pylori Lithuania75]
          Length = 418

 Score =  242 bits (619), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 107/438 (24%), Positives = 201/438 (45%), Gaps = 30/438 (6%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ + K++GC+ N++D+  M +      +       +AD+IV+N+C +   A   V S+ 
Sbjct: 2   KKVYFKTFGCRTNLFDTQVMGENLKD--FSATLEEQEADIIVINSCTVTNGADSAVRSYA 59

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            ++  L            V+  GC  + +G+E+  +   +  V G     ++  LL+   
Sbjct: 60  KKMARLDKE---------VLFTGCGVKTQGKELFEK-GFLKGVFGHDNKEKINALLQE-- 107

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
             K+    D ++E+K    ++V     + R   AF+ IQEGCD  C +C++P  RG   S
Sbjct: 108 --KKRFFIDDNLENKHLDTTMVSEFVGKTR---AFIKIQEGCDFDCNYCIIPSVRGRARS 162

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
               +++++   L   GV E+ L G NV +  GK         + L+  LS+I GL R+R
Sbjct: 163 FEERKILEQVGLLCSKGVQEVVLTGTNVGS-YGKD---RGSNIARLIKKLSQIAGLKRIR 218

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
             +  P  ++D       + D L  +LH+ +Q   D +L+ MNRR+     R++++ I S
Sbjct: 219 IGSLEPNQINDE-FLELLEEDFLEKHLHIALQHSHDLMLERMNRRNRTKSDRELLEVIAS 277

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
              + AI +DFIVG PGE+   F      ++ +       F YS R  TP S M + V  
Sbjct: 278 K--NFAIGTDFIVGHPGESGSVFEKAFKNLESLPLTHIHPFIYSKRKDTPSSLMTDSVSL 335

Query: 385 NVKAERLLCLQKKLREQQVSFN--DACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
               +RL  ++  +  +  +F      +   ++ L+E   ++ G+      +   + + S
Sbjct: 336 EDSKKRLNAIKDLILHKNKAFRLLQLKLNTPLKALVE--VQKDGEFKALDQFFNPIKIKS 393

Query: 443 KNHNIGDIIKVRITDVKI 460
                   ++++  ++K 
Sbjct: 394 DKPLRASFLEIKEYEIKE 411


>gi|46203668|ref|ZP_00051189.2| COG0621: 2-methylthioadenine synthetase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 359

 Score =  241 bits (615), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 93/336 (27%), Positives = 141/336 (41%), Gaps = 31/336 (9%)

Query: 14  VSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIR 73
            S    +     R    S GC   + DS R+     ++GYE     D AD++++NTC   
Sbjct: 5   ASPSDSKSAAAPRISFVSLGCPKALVDSERILTHLRAEGYELARRHDGADVVIVNTCGFL 64

Query: 74  EKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTY 133
           + A  +    +G              +  V+V GC+  A+ EEI  + P +  V GPQ Y
Sbjct: 65  DSAKAESLQAIGDA---------MAENGRVIVTGCMG-AQPEEIREKYPNLLAVTGPQAY 114

Query: 134 YRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC 193
             +   +  A              D F  L I   G        A+L I EGC+  CTFC
Sbjct: 115 ESVVAAVHEA---------VPPAHDPFLDL-IPPQGVKLTPRHYAYLKISEGCNNRCTFC 164

Query: 194 VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE--------KC 245
           ++P  RG  +SR  + V+ EA KL+  GV E+ ++ Q+ +A+                + 
Sbjct: 165 IIPSLRGDLVSRPAADVLREAEKLVKAGVKELLVVSQDTSAYGIDTRYAPSLWRDREVRA 224

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
            F DL   L ++   VR+ Y   +P       + A G    ++PYL +P+Q  S  +LK 
Sbjct: 225 RFYDLAKELGDLGAWVRMHYVYPYPHVDEVIPLMAEG---KILPYLDMPLQHASPSVLKR 281

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPG 341
           M R     +    I R R + PD+A   D    FP 
Sbjct: 282 MRRPGNQEKQLDRIRRWREICPDLAPPLDLHRRFPA 317


>gi|218458623|ref|ZP_03498714.1| putative 2-methylthioadenine synthetase (miaB-like) protein
           [Rhizobium etli Kim 5]
          Length = 204

 Score =  241 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 125/198 (63%), Positives = 155/198 (78%)

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
           HPRDM D LI+AH DL  LMPYLHLPVQSGSDRILK+MNRRHTA EY  +I+RIR+VRPD
Sbjct: 1   HPRDMDDRLIEAHRDLRALMPYLHLPVQSGSDRILKAMNRRHTAAEYLSLIERIRTVRPD 60

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           IA+S DFI GFPGETD+DF  T++LV  + YAQAFSFKYS R GTPG+ M +QV E +KA
Sbjct: 61  IALSGDFITGFPGETDEDFEDTLELVKTVRYAQAFSFKYSTRPGTPGAEMKDQVPEEIKA 120

Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIG 448
           ERL  LQ  L +QQ  F ++ +G+ I++L+EK G+  G+L+GRSPWLQSV +++K   IG
Sbjct: 121 ERLERLQALLLKQQQEFAESRIGKEIDLLLEKPGRMPGQLIGRSPWLQSVNVDAKASQIG 180

Query: 449 DIIKVRITDVKISTLYGE 466
           DIIKVRIT    ++L+ E
Sbjct: 181 DIIKVRITGTGTNSLFAE 198


>gi|266623033|ref|ZP_06115968.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Clostridium hathewayi DSM
           13479]
 gi|288865205|gb|EFC97503.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Clostridium hathewayi DSM
           13479]
          Length = 234

 Score =  241 bits (614), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 90/233 (38%), Positives = 138/233 (59%), Gaps = 2/233 (0%)

Query: 236 RGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPV 295
            GK L+ E  TF+ LL  +  I GL R+R+ TSHP+D+SD LI+   + D +  +LHLP+
Sbjct: 2   YGKNLE-EPMTFAKLLQEVEAIDGLRRIRFMTSHPKDLSDELIEVMKNSDKICHHLHLPL 60

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
           QSGS RILK+MNRR+T  +Y +++++IR+  PDI++++D IVGFPGET++DF  TMD+V 
Sbjct: 61  QSGSSRILKAMNRRYTKEQYLELVEKIRAAVPDISLTTDIIVGFPGETEEDFSETMDVVR 120

Query: 356 KIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIE 415
           ++ +  AF+F YS R GTP + M +Q+ E+V   R   L  +++          V  +  
Sbjct: 121 RVRFDSAFTFIYSRRTGTPAAAMEDQIPEDVVKNRFDRLLSEVQAVSAEVCGRDVHTVKS 180

Query: 416 VLIEKHGKE-KGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
           VL+E+     +G + GR      V        IG I+ V + + K     G +
Sbjct: 181 VLVEELDDHVEGFVTGRLDNNTIVHFKGDRSLIGKIVDVYLDESKGFYYMGTM 233


>gi|283850464|ref|ZP_06367752.1| RNA modification enzyme, MiaB family [Desulfovibrio sp. FW1012B]
 gi|283574035|gb|EFC22007.1| RNA modification enzyme, MiaB family [Desulfovibrio sp. FW1012B]
          Length = 448

 Score =  240 bits (613), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 114/458 (24%), Positives = 188/458 (41%), Gaps = 38/458 (8%)

Query: 16  QIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREK 75
                   P+RF + + GC++N Y+S  + + +   G  R +    ADL+VL +C +  +
Sbjct: 10  APPMPHASPKRFCLVTLGCKVNQYESRALAEAWLGSGLVRTDDPAAADLVVLCSCAVTAR 69

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135
           A  +       +        +      VVV GC A              +   G      
Sbjct: 70  AEAEGRRLARNLVRAARDAAR------VVVTGCAATVSP----------DAFAGLGALAV 113

Query: 136 LPEL-LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCV 194
             +  L R  FG        +     E   +   GY+R R   A + +Q+GC   C++C+
Sbjct: 114 PDKARLARDPFGPHTA----APRAPGEFPDLAVTGYDRAR---ALVKVQDGCSHGCSYCI 166

Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL 254
           VP  RG  +SR L+ V+ E R+L+  G  EI L G N+    G+ L      F DL+  L
Sbjct: 167 VPAARGPSVSRPLADVLAEVRRLLAAGHREIGLTGINLG-HYGRDLAPA-MDFWDLVADL 224

Query: 255 S-----EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
                 E  G  RLR  +  P  ++   +       ++ P+LH+ +QS    +L +M RR
Sbjct: 225 DAALAPEHAGTARLRLGSLDPAMLTGRGLAVLAGSRLVCPHLHISLQSADPAVLTAMGRR 284

Query: 310 -HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
              A      +D I    P + +  D + GFPGE++  F AT   +D +    A  F YS
Sbjct: 285 PGDAEAVSFFVDSISREWPAMGLGLDLLTGFPGESEAAFAATAAFLDGLPATYAHVFPYS 344

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQI--IEVLIEKHGKEKG 426
            R GT  + +  Q+   VKA R   L++    +  +F    +G+   + V +E+ G   G
Sbjct: 345 RRPGTRAAALPGQLPGPVKAGRARLLREAAEAKSAAFAAR-LGREASLLVAVERTGPTSG 403

Query: 427 KLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLY 464
                + ++        +  +G ++  R   V    L 
Sbjct: 404 TC---AQYVDCRFEAGPDAPLGSLVAARPLGVDGPVLR 438


>gi|126178768|ref|YP_001046733.1| MiaB-like tRNA modifying enzyme [Methanoculleus marisnigri JR1]
 gi|125861562|gb|ABN56751.1| MiaB-like tRNA modifying enzyme [Methanoculleus marisnigri JR1]
          Length = 374

 Score =  239 bits (609), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 113/419 (26%), Positives = 185/419 (44%), Gaps = 55/419 (13%)

Query: 55  RVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG 114
                ++AD +++NTC +      K+   L    +             + V GC+   + 
Sbjct: 1   MTEHPEEADAVIVNTCTVIGATERKMLRRLALFAD-----------RDLYVTGCMPVVQL 49

Query: 115 EEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKR 174
           ++I                 R  E+ ERA                            R  
Sbjct: 50  DKIRSVC--------TPHVIRPDEIHERAGS-----------------------VGTRGP 78

Query: 175 GVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA 234
           G T  + +  GC   C++C+    RG  IS     + D  R L+ +G CEI L GQ+V A
Sbjct: 79  GATGVVQVASGCVGRCSYCITRLARGRLISAPREAIADAVRALVTSGACEIQLTGQDVAA 138

Query: 235 WRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCL---IKAHGDLDVLMPYL 291
           W   GLD    +  DLL  ++EI G   +R    HP  +   L   + A+ +   +  +L
Sbjct: 139 W---GLD-RGESLPDLLQEIAEIPGRFAVRPGMMHPATVLGILEPLVDAY-ESKKIFRFL 193

Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351
           HLPVQSGSD +L+ M R +TA +  +I+D  R   PD+ ISSDFI GFPGETD++F  T+
Sbjct: 194 HLPVQSGSDTVLERMQRGYTAADVLRIVDAFRERYPDMMISSDFITGFPGETDEEFSQTL 253

Query: 352 DLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVG 411
           +L+ +  + +    +YS R GTP + + + + E ++ +R   L  +      S+N+  +G
Sbjct: 254 ELLRRAAFVKVNITRYSRRPGTPAAALKD-LPERIRKDRSRTLLAEANRVYDSYNERWIG 312

Query: 412 QIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDII-KVRITDVKISTLYGELVV 469
           +   ++  +     G  V R+P   +VV+  ++   G    K  IT  +   +   L+ 
Sbjct: 313 RETSIVATEKNA-PGSTVCRNPCYLNVVVK-EDLPFG-FAGKAAITGNRRHYVTAGLIT 368


>gi|153871438|ref|ZP_02000608.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Beggiatoa sp. PS]
 gi|152072092|gb|EDN69388.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Beggiatoa sp. PS]
          Length = 190

 Score =  238 bits (607), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 81/184 (44%), Positives = 121/184 (65%), Gaps = 1/184 (0%)

Query: 285 DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETD 344
             L+ +LHLPVQSGSDRIL  M R HT  EY+Q + R+R VRPDI++SSDFI+GFPGET+
Sbjct: 2   PELVSHLHLPVQSGSDRILSLMKRGHTILEYKQKVRRLREVRPDISLSSDFIIGFPGETE 61

Query: 345 DDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVS 404
            DF+ATM L++++ +  +FSF YSPR GT    M  QV   +K +RL  LQ +L E   +
Sbjct: 62  ADFQATMQLIEELRFDHSFSFMYSPRPGTAAVTMPNQVPLEIKKQRLAQLQARLTEIAQT 121

Query: 405 FNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTL 463
            + + +G +  +L+E   ++   +L GR+   + V   +++  IG +++VRIT+   ++L
Sbjct: 122 ISHSMLGTVQRILVEHPSRKNPNQLAGRTENNRVVNFTAEHSLIGQLVEVRITEALPNSL 181

Query: 464 YGEL 467
            GEL
Sbjct: 182 RGEL 185


>gi|307111826|gb|EFN60060.1| hypothetical protein CHLNCDRAFT_133325 [Chlorella variabilis]
          Length = 298

 Score =  237 bits (606), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 77/284 (27%), Positives = 133/284 (46%), Gaps = 16/284 (5%)

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257
             G   S+    V+DEAR L+D+GV E+ L+ ++ N +     DG+    S +L  L ++
Sbjct: 19  AMGKFRSKPWQAVLDEARHLVDSGVVELNLIAEDTNQYGMDRRDGKG--LSQVLQELGKL 76

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
           +GL  +R    +P   S+ LI        +  Y+ +P+Q  S+  L  MNR   A     
Sbjct: 77  EGLRWIRLLYCYPSYFSEELIDEIATNPKVCKYIDIPLQHISNLTLLGMNRPPQA-HTVA 135

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
           ++ ++R   P +A+ + FI GFPGE++ D R  +D      + +   F+YS   GTP + 
Sbjct: 136 LLHKLRERIPGLALRTTFISGFPGESEADHRELVDFCSSFRFERMGCFQYSEEDGTPAAE 195

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----P 433
           + +Q+ + V+  R   L    +     +  + VGQ +EVL++ H  E G++ GR+    P
Sbjct: 196 LPDQLPQEVREARRDELISLQQRVGEEWARSLVGQEVEVLVDGH-TEDGEVYGRTQWDAP 254

Query: 434 WLQSVVLNSKNH--------NIGDIIKVRITDVKISTLYGELVV 469
            +  +V   +           +G + + RIT      L    V 
Sbjct: 255 DIDHIVFLGEPEGGSGLAALEVGQLRRCRITSTSTFDLEAVPVA 298


>gi|227872341|ref|ZP_03990694.1| possible tRNA 2-methylthioadenine synthetase [Oribacterium sinus
           F0268]
 gi|227841805|gb|EEJ52082.1| possible tRNA 2-methylthioadenine synthetase [Oribacterium sinus
           F0268]
          Length = 230

 Score =  237 bits (605), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 84/227 (37%), Positives = 136/227 (59%), Gaps = 2/227 (0%)

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
           E+C+F +LL  ++++ GL RLR+ T +P+D SD L++   + + +  ++HLP+QSGS  I
Sbjct: 5   EECSFPELLAKIAKLPGLKRLRFMTPNPKDFSDELLQVMKENENICNHIHLPLQSGSTAI 64

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           LK MNR ++   Y  ++ +IR V PD+++++D IVGFPGET++DF+ TM++V    +  A
Sbjct: 65  LKRMNRHYSKESYMALVKKIREVLPDVSLTTDIIVGFPGETEEDFQDTMEVVAYSKFDSA 124

Query: 363 FSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422
           F+F+YS R GTP +   E V E+V  ER   L + +R          +G+++EVL+E+  
Sbjct: 125 FTFQYSKRTGTPAAKW-EAVPEDVVKERFQRLLEHIRLHSEEREGRDLGKVMEVLVEEKD 183

Query: 423 KE-KGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           KE +  L GR      V        IG+I+ VR+        YG ++
Sbjct: 184 KESENMLTGRLSNNVLVHFEGGERLIGEIVPVRLDKSMGFYYYGSVL 230


>gi|15639261|ref|NP_218710.1| hypothetical protein TP0269 [Treponema pallidum subsp. pallidum
           str. Nichols]
 gi|189025503|ref|YP_001933275.1| hypothetical protein TPASS_0269 [Treponema pallidum subsp. pallidum
           SS14]
 gi|6136505|sp|O83293|Y269_TREPA RecName: Full=Putative methylthiotransferase TP_0269
 gi|3322542|gb|AAC65257.1| conserved hypothetical protein [Treponema pallidum subsp. pallidum
           str. Nichols]
 gi|189018078|gb|ACD70696.1| hypothetical protein TPASS_0269 [Treponema pallidum subsp. pallidum
           SS14]
 gi|291059672|gb|ADD72407.1| hypothetical protein TPChic_0269 [Treponema pallidum subsp.
           pallidum str. Chicago]
 gi|308208122|gb|ADO20311.1| putative tRNA modification protein [Treponema pallidum subsp.
           pallidum]
 gi|313505246|gb|ADR64389.1| putative MiaB tRNA modification protein [Treponema pallidum subsp.
           pallidum str. Mexico A]
          Length = 482

 Score =  237 bits (604), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 106/489 (21%), Positives = 204/489 (41%), Gaps = 82/489 (16%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVN-SMDDADLI--VLNTCHIREKAAEKVYSFLG 85
           +++ GC++N  +S  +  +F  +G+     +   A ++  V+NTC +  KA +K      
Sbjct: 6   IETLGCRLNHVESESLAALFLQEGFAVCRGNTSTAPVVLCVINTCTVTSKAEQK------ 59

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTY------------ 133
             R L    ++     + +V GC AQ E   +      V    G Q              
Sbjct: 60  -ARRLVRLLLRTYPTAIALVTGCYAQLEPASLEAMDDRVLAFPGKQKDALSLLPSCLRAL 118

Query: 134 --YRLPELLERARFG---------KRVVDTDYSVEDKFERLSIVDGGYNRKRGV------ 176
              R P  +++   G         K+++  + + E   +          +  GV      
Sbjct: 119 LVQRGPAPIDQYVCGMRALLASLKKKIISLELTSEFPSQTHMPTRNALPQLTGVPHAPRV 178

Query: 177 -------------------------TAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVV 211
                                     A + +Q+GC+  C FC + + RG  +S    +V+
Sbjct: 179 SVSSFSEPTAVPRFALYAPRFLFHSRASIKVQDGCNSGCAFCRIRFARGRAVSLETHEVI 238

Query: 212 DEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPR 271
              + L   G+ E+ L G N++ +R   +D     F+ LL  + +    + +R ++ +P 
Sbjct: 239 GRVQALEARGMSEVVLTGVNLSQYRSGSID-----FAGLLELIVQETHTIHIRISSLYPE 293

Query: 272 DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAI 331
            ++   ++A      + P+ HL VQSGSDR+L+ M R +T  +  Q +  +RSVR +  +
Sbjct: 294 SVTSAFLRAIAHT-RVSPHFHLSVQSGSDRVLRRMRRAYTRADIYQAVSDLRSVREEPFL 352

Query: 332 SSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERL 391
             D IVGFPGET++DF  T  +   + +A    F +S R GT    M  +V + +  ER+
Sbjct: 353 GCDIIVGFPGETEEDFADTQRMCKTLRFAGIHVFPFSARPGTEAFAMDAKVPQRIAGERV 412

Query: 392 LCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR--SPWLQSVVLN---SKNHN 446
             +Q+   +   ++ +   G+ +  ++E       + V R  +    S+ +        +
Sbjct: 413 AAMQQLAEKNYRAYLEYWNGRELCAVVE-------QSVARVLTENYLSLPIIERGGVAAS 465

Query: 447 IGDIIKVRI 455
            G  +++R+
Sbjct: 466 AGSHVRIRV 474


>gi|308208098|gb|ADO20291.1| putative tRNA modification protein [Treponema pallidum subsp.
           pertenue]
 gi|308208104|gb|ADO20296.1| putative tRNA modification protein [Treponema pallidum subsp.
           pertenue str. Gauthier]
 gi|308208110|gb|ADO20301.1| putative tRNA modification protein [Treponema pallidum subsp.
           pertenue]
 gi|308208116|gb|ADO20306.1| putative tRNA modification protein [Treponema pallidum]
          Length = 482

 Score =  237 bits (604), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 106/489 (21%), Positives = 204/489 (41%), Gaps = 82/489 (16%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVN-SMDDADLI--VLNTCHIREKAAEKVYSFLG 85
           +++ GC++N  +S  +  +F  +G+     +   A ++  V+NTC +  KA +K      
Sbjct: 6   IETLGCRLNHVESESLAALFLQEGFAVCRGNTSTAPVVLCVINTCTVTSKAEQK------ 59

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTY------------ 133
             R L    ++     + +V GC AQ E   +      V    G Q              
Sbjct: 60  -ARRLVRLLLRTYPTAIALVTGCYAQLEPASLEAMDDRVLAFPGKQKDALSLLPSCLRAL 118

Query: 134 --YRLPELLERARFG---------KRVVDTDYSVEDKFERLSIVDGGYNRKRGV------ 176
              R P  +++   G         K+++  + + E   +          +  GV      
Sbjct: 119 LVQRGPAPIDQYVCGMRALLASLKKKIISLELTSEFPSQTHMPTRNALPQLTGVPHAPRV 178

Query: 177 -------------------------TAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVV 211
                                     A + +Q+GC+  C FC + + RG  +S    +V+
Sbjct: 179 SVSSFSEPTAVPRFALYAPRFLFHSRASIKVQDGCNSGCAFCRIRFARGRAVSLETHEVI 238

Query: 212 DEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPR 271
              + L   G+ E+ L G N++ +R   +D     F+ LL  + +    + +R ++ +P 
Sbjct: 239 GRVQALEARGMSEVVLTGVNLSQYRSGSID-----FAGLLELIVQETHTIHIRISSLYPE 293

Query: 272 DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAI 331
            ++   ++A      + P+ HL VQSGSDR+L+ M R +T  +  Q +  +RSVR +  +
Sbjct: 294 SVTSAFLRAIAHT-RVSPHFHLSVQSGSDRVLRRMRRAYTRADIYQAVSDLRSVRGEPFL 352

Query: 332 SSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERL 391
             D IVGFPGET++DF  T  +   + +A    F +S R GT    M  +V + +  ER+
Sbjct: 353 GCDIIVGFPGETEEDFADTQRMCKTLRFAGIHVFPFSARPGTEAFAMDAKVPQRIAGERV 412

Query: 392 LCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR--SPWLQSVVLN---SKNHN 446
             +Q+   +   ++ +   G+ +  ++E       + V R  +    S+ +        +
Sbjct: 413 AAMQQLAEKNYRAYLEYWNGRELCAVVE-------QSVARVLTENYLSLPIIERGGVAAS 465

Query: 447 IGDIIKVRI 455
            G  +++R+
Sbjct: 466 AGSHVRIRV 474


>gi|40794666|gb|AAR90873.1| putative 2-methylthioadenine synthetase [Brachyspira pilosicoli]
          Length = 359

 Score =  237 bits (604), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 108/373 (28%), Positives = 172/373 (46%), Gaps = 29/373 (7%)

Query: 109 VAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDG 168
           +++   E  +     V+  +G     ++   +E+  F     +T Y   + F+R+     
Sbjct: 1   MSERYKENFMEMFQEVDSAIGIHDLEKILTAVEKDGFHDAEENTTYK--EYFDRI----- 53

Query: 169 GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLL 228
             N     +A++ I +GC   C+FC +P  RG   SR +  +V EAR+   NG  EI L+
Sbjct: 54  --NTSTNYSAYIRISDGCHANCSFCAIPSIRGKHRSRKIEDIVKEAREYAKNGAKEINLI 111

Query: 229 GQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLM 288
                 + G  +  +K    DLL  LS I G+  +R    +P  ++  +I A    + ++
Sbjct: 112 AHETT-YYGYDIY-KKLALPDLLKELSVIDGIEWIRVLYQNPVVLNKSIIDAMFKTEKVV 169

Query: 289 PYLHLPVQSGSDRILKSMNRRHTA-YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDF 347
           PY  +P+Q     ILK MNR +     Y+ +I+ IRS   +  I +  IVGFPGET + F
Sbjct: 170 PYFDIPLQHIDKDILKDMNRGNRGYSFYKDMINYIRSYDENAVIRTSLIVGFPGETVESF 229

Query: 348 RATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLL---CLQKKLREQQVS 404
           +  +  V K+   +   F YS    T    +L    +  K ++L+    L +   E    
Sbjct: 230 KKLVSFVKKMKLDRVGVFTYSEEENTDA--LLINKKKISKNKKLMLRDKLMRIALEVSEE 287

Query: 405 FNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQS---VVLNSKNH---NIGDIIKVR 454
                +G+ I+VLIEK  KE+ K +GRS    P +     V  + KN    NIGDI+KV+
Sbjct: 288 RLSRFIGKSIDVLIEK--KEEDKFIGRSKYDAPEVDGFVEVYFDKKNVDNINIGDIVKVK 345

Query: 455 ITDVKISTLYGEL 467
           I       L G L
Sbjct: 346 IVHNTEYDLVGNL 358


>gi|153005211|ref|YP_001379536.1| RNA modification protein [Anaeromyxobacter sp. Fw109-5]
 gi|152028784|gb|ABS26552.1| RNA modification enzyme, MiaB family [Anaeromyxobacter sp. Fw109-5]
          Length = 450

 Score =  237 bits (604), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 106/399 (26%), Positives = 172/399 (43%), Gaps = 14/399 (3%)

Query: 14  VSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIR 73
           ++   D      R  + + GC+++  D   +      +  E     + AD++V++ C I 
Sbjct: 1   MAASSDGAPRRPRVALVALGCRVSRADVDAVASALGDR-VELARDEEPADVVVVSGCTIT 59

Query: 74  EKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTY 133
             A       +           +      +V AGC A+    E+L   P V  V+G + +
Sbjct: 60  GDADAAARRAI-------RRAARANPGARIVAAGCYAELRP-EVLGALPGVAAVLGAREH 111

Query: 134 YRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC 193
             +   + R   G    D   S                  R    FL IQ+GCD  C++C
Sbjct: 112 AEVAGTVLR-LAGLPAADPG-SAAGASRGAGWGPPPLVLARHTRPFLKIQDGCDARCSYC 169

Query: 194 VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS 253
           VVP  RG   S +  + +     L+     EI + G ++ A  G+ L   + T +DL+ +
Sbjct: 170 VVPLARGPARSLAFDEALGRL-SLLGARHAEIVVAGVHLGA-YGRDLSPRR-TLADLIRA 226

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
                   RLR ++  P ++   L+        L P+LHLP+QSGSDRIL +M R + A 
Sbjct: 227 AVGGGLRARLRLSSLEPLEVPLDLLDDPAVAPALCPHLHLPLQSGSDRILAAMRRPYRAD 286

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
            YR+      +  P + + +D + GFPGETDDD RAT+ L++ +  A    F++SPR GT
Sbjct: 287 GYRRAALEGAARLPGLCLGADVVTGFPGETDDDHRATLSLIEALPLAYLHVFRFSPRPGT 346

Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQ 412
             + +   V   V   R   L      +  +F D  +G+
Sbjct: 347 EAAALPSAVPGAVARARAAELVALSERRWRAFLDGLLGK 385


>gi|318081364|ref|ZP_07988696.1| hypothetical protein SSA3_32842 [Streptomyces sp. SA3_actF]
          Length = 301

 Score =  235 bits (599), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 84/294 (28%), Positives = 137/294 (46%), Gaps = 14/294 (4%)

Query: 185 GCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK 244
           GCD+ C+FC +P  RG  ISR  S V+ E R L + GV E+ L+ +N N   GK L G+ 
Sbjct: 3   GCDRRCSFCAIPSFRGSFISRRPSDVLTETRWLAEQGVREVMLVSEN-NTSYGKDL-GDI 60

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304
                LL  L+ + G+ R+R +   P +M   LI        + PY  L  Q  +  +L+
Sbjct: 61  RLLETLLPELAAVDGIERVRVSYLQPAEMRPGLIDVLTSTPKIAPYFDLSFQHSAAGVLR 120

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
           +M R      +  ++D+IR+  P+  + S+FIVGFPGET++D       +          
Sbjct: 121 AMRRFGGTDSFLGLLDQIRAKAPEAGVRSNFIVGFPGETEEDVAELERFLTSARLDAIGV 180

Query: 365 FKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE 424
           F YS   GT  +    ++DE V AERL  + +   E      +  +G+ +EVL+E    E
Sbjct: 181 FGYSDEEGTEAATYATKLDEEVVAERLARVSRLAEELTAQRAEERIGETMEVLVESAATE 240

Query: 425 KGKLVGR----SPWLQSVVL--------NSKNHNIGDIIKVRITDVKISTLYGE 466
               +GR    +P     ++        +  +  +G ++  ++   +   L  E
Sbjct: 241 DEPALGRGPHQAPETDGQIILTGGAALPDGASPRVGRMVVAKVIGTEGVDLVAE 294


>gi|159111403|ref|XP_001705933.1| tRNA 2-methylthioadenosine synthase [Giardia lamblia ATCC 50803]
 gi|157434024|gb|EDO78259.1| tRNA 2-methylthioadenosine synthase [Giardia lamblia ATCC 50803]
          Length = 525

 Score =  235 bits (599), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 102/514 (19%), Positives = 206/514 (40%), Gaps = 59/514 (11%)

Query: 8   IGVAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNS------MDD 61
           +  A   +Q     +   R  + + GC  N  +S  +     + G    +S       + 
Sbjct: 7   VAPALAHAQSTSPLLTNVRVMMVTMGCGHNAAESDIIASALQTAGAVITHSNGKYITPES 66

Query: 62  A---DLIVLNTCHIREKAAEKVYSFLGR-----------------IRNLKNSRIKEGGDL 101
           A   D++ +N+C ++  + +K +  + +                    + +   K     
Sbjct: 67  ARDVDVLYINSCTVKNPSEDKAFVHVQKGLEVGTVVVLGGCVPQSYGTVNDELRKASAAK 126

Query: 102 LVVVAGCVAQAEGEEILRRS-PIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDK- 159
            ++++G + Q     + R     +++ +   ++   P L       K  V    S   K 
Sbjct: 127 QLIISGVLTQQWLAALPRLLREAIDLHILNNSHLLQPALRMTQPSDKAGVPAAISYVTKE 186

Query: 160 ----FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEAR 215
                E   +     +R   +   ++   GC   CT+C   ++RG   S  L  ++   R
Sbjct: 187 ATKDVEVEYLKCTPVHRANPIIDIISTGSGCMGSCTYCKTCHSRGRLRSVPLDTLLARIR 246

Query: 216 KLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK----GLVRLRYTTSHP 270
             + +  + E+ L G++  AW G+  D         +  L E +     ++++  T    
Sbjct: 247 SSLADPIIRELWLTGEDTLAW-GRESDATFAVLLQEVQKLFETENPTHKMLKIGMTDPDS 305

Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330
               +  + +      +  +LHLPVQSGSDRIL  M R +    + +   +++S  PD+ 
Sbjct: 306 VINQEDSLISFMRCKYVYKFLHLPVQSGSDRILTLMRRHYDIETFLRSCSKLQSAVPDLC 365

Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKI-----GYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
           + +D I GFPGETD+D   +++L   +      +      +Y  R  TP ++M EQV  +
Sbjct: 366 LDTDIICGFPGETDEDHAQSLNLFRNLKEDAPRFQVVNITQYYARKNTPAASM-EQVPAS 424

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLI------EKHGKEKGKLVGRSPWLQSVV 439
            K ER   + + ++       D   GQ+ ++++      E HG++ G   G++    +V 
Sbjct: 425 KKRERTREMSEVVKNSF--RRDQYHGQVHDIMVLERLQTENHGRQYG---GKTYNNLTVA 479

Query: 440 LNSKNH----NIGDIIKVRITDVKISTLYGELVV 469
           + + +      +G  ++VRIT      L G ++ 
Sbjct: 480 IEAVDQEVPIKLGSYVRVRITGSTRVALIGSVMT 513


>gi|13542169|ref|NP_111857.1| 2-methylthioadenine synthetase [Thermoplasma volcanium GSS1]
 gi|14325601|dbj|BAB60504.1| hypothetical protein [Thermoplasma volcanium GSS1]
          Length = 401

 Score =  234 bits (598), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 107/446 (23%), Positives = 202/446 (45%), Gaps = 50/446 (11%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + + ++YGC +N  ++    +   ++G   V++  +ADL ++ TC + +K  + + + + 
Sbjct: 2   KIYFEAYGCTLNQGETALYVNKLLNEGNTLVSNPKEADLSIIGTCAVIKKTEDHMMARIQ 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +               V V GC+A  +G+ ++     V+V+             +R R 
Sbjct: 62  NLSR----------FGKVEVIGCLAPVKGKTMVE--DNVSVIEK-----------DRFRS 98

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            + V+D    V  +                + + + I +GC   C FCV    RG  +SR
Sbjct: 99  FQEVIDEVSPVNAE----------------IVSGIPINQGCTGKCNFCVSHIARGKLVSR 142

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
              ++  + + L+  G+ EI +   +  A  GK +         L+ +++EI    RLR 
Sbjct: 143 KPEKIAGQIKILLQRGIKEIKITSLDTAA-YGKDI---GLRLPHLIRTITEIGDDFRLRV 198

Query: 266 TTSHPR---DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
               P+   ++ D LI A+   + +  +LHLPVQSG D +L+ MNR +T  ++ +I  + 
Sbjct: 199 GMMEPKNTLEIVDDLISAYR-SEKVFKFLHLPVQSGDDYVLEVMNREYTVSDFIRITGKF 257

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R   PD  +S+D I+G+  E DD F  T+ L++KI        K+SPR  T       + 
Sbjct: 258 REAFPDSTLSTDLIIGYYAENDDSFEKTVQLIEKIRPEIINVTKFSPRELTADFEKRPK- 316

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
             N+  E+   +    +E         +G+   VLI ++GK +  ++GR    + +V+  
Sbjct: 317 PTNILKEQDRMIADMHKEILQEKFSNLIGKTEFVLITENGKGRS-MIGRDHAYRPIVIMD 375

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
           K     +  +V IT  + ++L G ++
Sbjct: 376 KTRKF-EFHQVEITGFENTSLIGRII 400


>gi|218295686|ref|ZP_03496482.1| 2-alkenal reductase [Thermus aquaticus Y51MC23]
 gi|218243845|gb|EED10372.1| 2-alkenal reductase [Thermus aquaticus Y51MC23]
          Length = 224

 Score =  234 bits (598), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 82/210 (39%), Positives = 123/210 (58%)

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           G+ R+R+ TSHP + +D +I+A  +   +  Y+HLPVQSGSDR+L+ M R +    Y + 
Sbjct: 2   GIPRVRFLTSHPVNFTDDIIEAIAETPAITRYIHLPVQSGSDRVLRRMAREYRRAHYLER 61

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           I +IR   PD+ +S+D IVGFPGET++DF+ T+ L D++GY QA+ F YSPR GTP    
Sbjct: 62  IRKIREALPDVVLSTDIIVGFPGETEEDFQETLSLYDEVGYDQAYMFIYSPRPGTPAYKH 121

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSV 438
            + +   VK ERL  L +K +E     N   VG+ +EVL+    KE+G + G       V
Sbjct: 122 FQDLPREVKVERLQRLIEKQKEWSYRRNLEWVGKKVEVLVRGVAKEEGYVQGHDRGNHPV 181

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           ++ +       + +V I       L+GE+V
Sbjct: 182 LIPAHQAPTPGLYQVEIKQATPHLLFGEVV 211


>gi|307942734|ref|ZP_07658079.1| protein YleA [Roseibium sp. TrichSKD4]
 gi|307773530|gb|EFO32746.1| protein YleA [Roseibium sp. TrichSKD4]
          Length = 252

 Score =  233 bits (595), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 118/211 (55%), Positives = 164/211 (77%), Gaps = 1/211 (0%)

Query: 8   IGVAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVL 67
           I      SQ  ++    ++ FV++YGCQMNVYDS RM D+   +GYE  ++++DADL++L
Sbjct: 30  IETTDTASQPANEKAA-RKVFVRTYGCQMNVYDSERMSDVLAREGYEPTDTVEDADLVLL 88

Query: 68  NTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVV 127
           NTCHIREKAAEKVYS LGRIR +K+ R K G + ++ VAGCVAQAEG EI RR+P+V++V
Sbjct: 89  NTCHIREKAAEKVYSELGRIRKVKDERAKSGKETVIGVAGCVAQAEGAEISRRAPVVDLV 148

Query: 128 VGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCD 187
           VGPQ+Y++LP+LL++A+ G++VV+T++ ++ KF+ LS       RKR  +AFLT+QEGCD
Sbjct: 149 VGPQSYHQLPDLLKKAKGGEKVVETEFDIDAKFDHLSAKAKQPVRKRAPSAFLTVQEGCD 208

Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDEARKLI 218
           KFCTFCVVPYTRG E+SRS+ Q+V+EA ++ 
Sbjct: 209 KFCTFCVVPYTRGAEVSRSVDQIVEEAERMA 239


>gi|261416782|ref|YP_003250465.1| Radical SAM domain protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261373238|gb|ACX75983.1| Radical SAM domain protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|302327266|gb|ADL26467.1| radical SAM domain protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 467

 Score =  233 bits (595), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 112/485 (23%), Positives = 190/485 (39%), Gaps = 65/485 (13%)

Query: 29  VKSYGCQMNVYDSLRMEDMFF-------------------------SQGYERVNSMDDAD 63
           V S GC  N  D  ++  +                           +   E   +   A+
Sbjct: 4   VLSQGCAANFGDGEKIARILSQKSEVTFEFPEAKPAHSTNAENSTSAANLENAENSTSAE 63

Query: 64  -----------LIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQA 112
                         LN C ++  A        G ++ L+ +       + + + GC  + 
Sbjct: 64  NAADFRTEKPEAFYLNVCTVKGNA--------GAMKLLRKAASTF-PGVPIYITGCAPKD 114

Query: 113 EGEEILRRSPIVNVVVGPQTYYRLPELLERA-RFGKRVVDTDYSVEDKFERLSIVDGGYN 171
             EE LR  P V        +  L EL   A    +        +  +    +       
Sbjct: 115 FREEALRTVPHV-------QFTSLKELDASAILPTQSAQSPSSQINARTPDSNKASRNVL 167

Query: 172 RKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQN 231
           R+      + I+EGC   C FC     +G   S +   +VD+ + L+D+G  EI L GQ+
Sbjct: 168 RESPFVGIVNIEEGCLDACAFCSTHLVKGRLHSFAPQTIVDQVQALVDDGCLEIQLTGQD 227

Query: 232 VNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM---SDCLIKAHGDLDVLM 288
             A  G  +       +     L+ + G  R+R    +PR +    + L+    D D + 
Sbjct: 228 C-ACYGFDIGTNLAELTQ--RILTHVNGNYRIRLGMGNPRHVLSYQEALLNCFTD-DRIY 283

Query: 289 PYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFR 348
            ++H+PVQSGS+ +LK+MNRRHTA +Y  +            +S+D IVG+PGET  DF 
Sbjct: 284 KFIHIPVQSGSENVLKAMNRRHTARDYATLAHAFTERFRKFTLSTDLIVGYPGETAADFN 343

Query: 349 ATMDLVDKIGYAQAFSFKYSPRLGTPGSNML----EQVDENVKAERLLCLQKKLREQQVS 404
            T+ L+ +         ++  R GT  + +     + V +++K ER   L +  ++  + 
Sbjct: 344 DTLTLLKETRPTVCNITRFVTRPGTVAARLETASNQAVSDDIKHERSAILAEAFQQIALE 403

Query: 405 FNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLY 464
            N   +G    V+ EK G   G  + R+   + V L       G  ++VRIT+ +   L 
Sbjct: 404 NNREWIGDECTVVTEKPGYRAGTTIARNEAYRPVALQGT-FPAGKTLRVRITEAEPFALL 462

Query: 465 GELVV 469
            E + 
Sbjct: 463 AEPLA 467


>gi|312797207|ref|YP_004030129.1| tRNA 2-methylthioadenosine synthase [Burkholderia rhizoxinica HKI
           454]
 gi|312168982|emb|CBW75985.1| tRNA 2-methylthioadenosine synthase [Burkholderia rhizoxinica HKI
           454]
          Length = 288

 Score =  233 bits (594), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 116/279 (41%), Positives = 161/279 (57%), Gaps = 12/279 (4%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           +P++ ++K++GCQMN YDS +M D+   ++G  + +S +DAD+I+ NTC IREKA EKV+
Sbjct: 1   MPKKVYIKTFGCQMNEYDSDKMVDVLGAAEGLIKTDSPEDADVILFNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S LGR+R LK        DLL+ V GCVA  EG  I+ R+P V++V GPQT +RLP +++
Sbjct: 61  SDLGRVRELKQ----VRPDLLIGVGGCVASQEGAAIVARAPYVDLVFGPQTLHRLPAMID 116

Query: 142 RARF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
             R  G   VD  +   +KF+ L        R  G TAF++I EGC K+C++CVVPYTRG
Sbjct: 117 ARRASGHAQVDISFPEIEKFDNLPP-----PRVEGPTAFVSIMEGCSKYCSYCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            E+SR L  V+ E   L D GV E+TLLGQNVNA+RG    G     +D    +  + G 
Sbjct: 172 EEVSRPLDDVLTEVAGLADQGVREVTLLGQNVNAYRGAISAGA-AEIADFSTLIEYVGGD 230

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
            R R    H       L  A   +         P  +G+
Sbjct: 231 SRDRADPLHDVAPEGILATADRYVPKRAQAGEPPAPAGT 269


>gi|147677217|ref|YP_001211432.1| hypothetical protein PTH_0882 [Pelotomaculum thermopropionicum SI]
 gi|146273314|dbj|BAF59063.1| hypothetical protein [Pelotomaculum thermopropionicum SI]
          Length = 310

 Score =  232 bits (593), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 92/277 (33%), Positives = 149/277 (53%), Gaps = 16/277 (5%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           +  +R  + + GC++N Y+S  +  +F  +GY  V   D+AD+ ++NTC +      K  
Sbjct: 1   MAEKRVAIHTLGCKVNQYESASLAGLFLERGYRLVGFDDEADVYIINTCTVTHLGDRKSR 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             + R         +     L+ V GC AQ    EI  + P V++V+G +   RL +L+E
Sbjct: 61  QLIRRA-------SRTNPAALIAVTGCYAQTSPGEIA-KIPGVDLVIGTRDRARLVDLVE 112

Query: 142 RARFGKRVVDT--DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
            A  GK  +    ++   ++FE +  +      +  V AFL IQEGCD FCT+C++PY R
Sbjct: 113 TAVKGKGPLCAVGEHVAGEEFEEVRALPV----QGRVRAFLKIQEGCDNFCTYCIIPYAR 168

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G   SR   +V++EAR+L+ +G  EI L G    A  G+ L GE  T + L+  L+ + G
Sbjct: 169 GPMRSRRPERVLEEARELVRSGYKEIVLTGIRTGA-YGRDL-GESLTLAGLMRDLAGVSG 226

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQ 296
           L+RLR ++  P D++D LI+    L+V   +LH+P +
Sbjct: 227 LLRLRLSSIEPVDITDELIQTMAGLEVFCRHLHVPAE 263


>gi|308162206|gb|EFO64615.1| tRNA 2-methylthioadenosine synthase [Giardia lamblia P15]
          Length = 525

 Score =  232 bits (591), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 103/511 (20%), Positives = 199/511 (38%), Gaps = 63/511 (12%)

Query: 13  MVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQG---------YERVNSMDDAD 63
             +Q     +   R  + + GC  N  +S  +     + G         Y    S  D D
Sbjct: 12  APAQSASLLLTNVRVMMVTMGCGHNAAESDIIASALQTAGAVIIHSNGKYITPESAKDVD 71

Query: 64  LIVLNTCHIREKAAEKVYSFLGR-----------------IRNLKNSRIKEGGDLLVVVA 106
           ++ +N+C ++  + +K +  + +                    + +   K      ++++
Sbjct: 72  VLYINSCTVKNPSEDKAFVHVQKGLEVGTVVVLGGCVPQSYGAMSDELRKASASKQLIIS 131

Query: 107 GCVAQAE--------GEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVED 158
           G + Q           E I       + V+ P      P            V  + + + 
Sbjct: 132 GVLTQQWLTALPGLLREAIDFHILNTSHVLQPALRMTQPSSKAGVSAAISYVTKEATKDV 191

Query: 159 KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLI 218
             E L        R   +   ++   GC   CT+C   ++RG   S  L  ++   R  +
Sbjct: 192 DVEYLKCTPVH--RANPIIDIISTGSGCMGSCTYCKTCHSRGRLRSVPLDTLLTRIRNSL 249

Query: 219 DN-GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK----GLVRLRYTTSHPRDM 273
            +  + E+ L G++  AW G+            +  L E +     ++++  T       
Sbjct: 250 ADPVIRELWLTGEDTLAW-GRESGTTFAGLLQEVQKLLETENPTHKMLKIGMTDPDSIIN 308

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
            +  + +      +  +LHLPVQSGSDRIL  M R +    + +   +++S  PD+ + +
Sbjct: 309 QEDSLASFICCKYVYKFLHLPVQSGSDRILTLMRRHYDIETFLKSCSKLQSAVPDLCLDT 368

Query: 334 DFIVGFPGETDDDFRATMDLVDKI-----GYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           D I GFPGETD+D   +++L   +      +      +Y  R  TP ++M EQV  + K 
Sbjct: 369 DIICGFPGETDEDHAQSLNLFRNLKEDAPRFQVVNITQYYARKNTPAASM-EQVPASKKR 427

Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLI------EKHGKEKGKLVGRSPWLQSVVLNS 442
           ER   + + ++       D   GQ+ ++++      E HG++ G   G++    +VV+ +
Sbjct: 428 ERTKEMSEVVKNSF--RRDQYHGQVHDIMVLEKLQTESHGRQYG---GKTYNNLTVVIET 482

Query: 443 KNH----NIGDIIKVRITDVKISTLYGELVV 469
            +      +G  I+VRIT      L G ++ 
Sbjct: 483 VDQEVPIKLGSYIRVRITGSTRVALIGSVMA 513


>gi|257460357|ref|ZP_05625458.1| conserved hypothetical protein [Campylobacter gracilis RM3268]
 gi|257441688|gb|EEV16830.1| conserved hypothetical protein [Campylobacter gracilis RM3268]
          Length = 410

 Score =  231 bits (589), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 107/435 (24%), Positives = 193/435 (44%), Gaps = 33/435 (7%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + + K++GC+ N+YD+  ++    S   E  +    AD++V+N+C +   A   V +++ 
Sbjct: 2   KIYFKTFGCRTNIYDTQLIKSNLKSG--EITHDEQGADVVVINSCTVTNGADADVRNYVN 59

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           ++  L            +++ GC A + GEE+  ++  V  V G     ++ E L     
Sbjct: 60  KMNRLGKK---------ILLTGCGAVSRGEELY-KNGAVFGVFGMSQKEKIDEFL----- 104

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G      D       E+  + D     +    AF+ IQEGCD  C++C++P  RG   S 
Sbjct: 105 GSESKFYDIGDLSSVEKNLVSDY----EDHTKAFIKIQEGCDFNCSYCIIPSVRGRSRSS 160

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           S   ++ EA  L+ NG  EI L G N+ +  GK       +   LL  L  I+G+ R+R 
Sbjct: 161 SEDAILKEAVSLVANGFSEIVLTGTNIGS-YGK---AAGTSLGALLQKLGGIRGIRRIRL 216

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
            +  P  +     +       L  +LH+ +Q  S ++L  M RR++A    ++   +   
Sbjct: 217 GSIEPSQIDASF-REILSEPWLERHLHIALQHTSQKMLSIMRRRNSALRDLELFCELAER 275

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
               A+ +DFIV  PGE+++ +   ++   K       +F +SPR GT  +++  ++D  
Sbjct: 276 --GFALGTDFIVAHPGESEELWLEAVENFKKFPLTHLHAFIFSPRQGTASASLKGRIDGK 333

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQI-IEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
               RL  LQ         F  +   ++ + VLIE+  K      G   +   + + S  
Sbjct: 334 TAKARLKMLQNITALNNYKFRLSH--KVPLNVLIER--KNGEFYEGYDQFYDKIWIESDE 389

Query: 445 HNIGDIIKVRITDVK 459
                 +++R  +VK
Sbjct: 390 DLSKKWMEIRDYEVK 404


>gi|167945967|ref|ZP_02533041.1| tRNA-i(6)A37 modification enzyme MiaB [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 242

 Score =  230 bits (588), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 123/247 (49%), Positives = 164/247 (66%), Gaps = 6/247 (2%)

Query: 103 VVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR-VVDTDYSVEDKFE 161
           + V GCVA  EG+ I +R+P V++V GPQT +RLPE++   R     VVD  +   +KF+
Sbjct: 1   IGVGGCVASQEGDAIRQRAPYVDLVFGPQTLHRLPEMIREVRAQHHPVVDVSFPEIEKFD 60

Query: 162 RLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNG 221
           RL        R  G TAF++I EGC K+CT+CVVP+TRG EISR    V+ E   L   G
Sbjct: 61  RLP-----EPRAEGPTAFVSIMEGCSKYCTYCVVPFTRGEEISRPFDDVIAEVVGLAAQG 115

Query: 222 VCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAH 281
           V E+ LLGQNVNA+RG+  DGE    + L+  ++ I G+ R+R+TTSHP + SD LI+A+
Sbjct: 116 VREVNLLGQNVNAYRGEMYDGETADLALLIEYVAAIDGIERIRFTTSHPLEFSDSLIEAY 175

Query: 282 GDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPG 341
           G +  L+ ++HLPVQSGSDR+L  M R H A EY+  I ++R VRPDI ISSDFIVGFPG
Sbjct: 176 GRVPELVSFVHLPVQSGSDRVLAMMKRGHMAIEYKAKIRKLREVRPDITISSDFIVGFPG 235

Query: 342 ETDDDFR 348
           +    F+
Sbjct: 236 DDRAGFQ 242


>gi|313217015|emb|CBY38208.1| unnamed protein product [Oikopleura dioica]
          Length = 1477

 Score =  230 bits (587), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 77/304 (25%), Positives = 143/304 (47%), Gaps = 11/304 (3%)

Query: 169 GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLL 228
              R+  +   ++I  GC   CT+C   + RG   S  + ++V    +  + G+ E+ L 
Sbjct: 46  PKVRRNALIEIISINTGCLNSCTYCKTKHARGDLASYPIDEIVARFEQAFEQGIVEVWLT 105

Query: 229 GQNVNAWRGKGLDGEKCTFSDLLYSLSE-IKGLVRLRYTTSHPRDMSDCL--IKAHGDLD 285
            ++  A  G+ +        +LL ++ + I     +R   ++P  + + L  I    +  
Sbjct: 106 SEDTGA-YGRDI---GTNIVELLNAVVKTIPEGCMMRIGMTNPPYILEHLEGIAKILNHP 161

Query: 286 VLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDD 345
            +  +LH+PVQSGSD +L SM R +   ++ +++D +R+  PD  I++D I GFP ET++
Sbjct: 162 RVYSFLHVPVQSGSDAVLNSMRREYNREDFCKVVDTLRANVPDCNIATDIIAGFPTETEE 221

Query: 346 DFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSF 405
           DF  T+ L +K  +   F  ++ PR GTP +   EQ+   V  ER   L      +    
Sbjct: 222 DFDETISLCEKYKFPSLFMNQFFPRPGTPAAKW-EQIPRQVIKERTKKLSNVF--KSYLP 278

Query: 406 NDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS-KNHNIGDIIKVRITDVKISTLY 464
            +   G+   VLI +   +K  LVG +     +++    +  +G  + V +      ++ 
Sbjct: 279 FEGREGERHSVLITEMAHDKVSLVGHTKSYHQILVKGNPDELMGKRVDVVVYQTTKHSML 338

Query: 465 GELV 468
           G +V
Sbjct: 339 GRIV 342


>gi|261260656|gb|ACX55014.1| YmcB [Bacillus amyloliquefaciens]
          Length = 208

 Score =  230 bits (587), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 74/209 (35%), Positives = 115/209 (55%), Gaps = 2/209 (0%)

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
           +    DL+  L +I  + R+R+TTSHPRD  D LI+       L+ ++HLPVQSGS  +L
Sbjct: 1   RYGLGDLMDELRKID-IPRIRFTTSHPRDFDDHLIEVLAKGGNLLDHIHLPVQSGSSAML 59

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           K M R++    Y +++ +I++  P+ ++++D IVGFP ETD+ F  T+ L  ++ +  A+
Sbjct: 60  KMMARKYDRERYLELVGKIKAAMPNASLTTDIIVGFPNETDEQFEETLSLYREVEFDSAY 119

Query: 364 SFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK 423
           +F YSPR GTP + M + V   VK ERL  L   ++E          G+ +EVL+E   K
Sbjct: 120 TFIYSPREGTPAAKMKDNVPMRVKKERLQRLNDLVKEISAKKMKEYEGRTVEVLVEGESK 179

Query: 424 EK-GKLVGRSPWLQSVVLNSKNHNIGDII 451
                L G +   + V        IG I+
Sbjct: 180 NNPDILAGYTEKSKLVNFKGPKDAIGKIV 208


>gi|284030926|ref|YP_003380857.1| MiaB-like tRNA modifying enzyme YliG [Kribbella flavida DSM 17836]
 gi|283810219|gb|ADB32058.1| MiaB-like tRNA modifying enzyme YliG [Kribbella flavida DSM 17836]
          Length = 544

 Score =  229 bits (583), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 89/338 (26%), Positives = 156/338 (46%), Gaps = 17/338 (5%)

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKR----GVTAFLTIQEGCDKFCTFCVVP 196
           +    G+ V  T+ +++      +   G    +R    G  A L +  GCD+ C FC +P
Sbjct: 194 KAELKGRAVKATELTIDAPDLASAPASGPRVVRRRLDGGPMAPLKLASGCDRRCAFCAIP 253

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256
             RG  +SR  ++V+ EA+ L ++GV E+ L+ +N  +  GK L G+      L+  ++ 
Sbjct: 254 AFRGAFVSRRPTEVLGEAQWLAEHGVREVFLVSENSTS-YGKDL-GDLRLLETLVGEIAA 311

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           + GL R+R +   P +M   LI A      ++PY  L  Q  S  +L+ M R   A  + 
Sbjct: 312 VPGLTRVRVSYLQPAEMRPTLITAMTSTPGVVPYFDLSFQHASGPLLRRMRRFGDAERFL 371

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
           ++I+++R   P   I S+ IVGFPGET+ D     D + + G      F YS   GT   
Sbjct: 372 ELIEQVRGQAPTAGIRSNVIVGFPGETEQDVDILCDFLSRAGLDAIGVFGYSDEDGTEAE 431

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQ 436
               ++DE+  A RL  + +   +   +  +A +G+ +EVL+E    +  +  GR+   Q
Sbjct: 432 TYDGKLDEDTIAARLDRVTRLAEDLTSARAEARIGETVEVLVESIDGDTAE--GRAAH-Q 488

Query: 437 SVVLNSKNHN--------IGDIIKVRITDVKISTLYGE 466
              ++             +GD++   +   +   L  +
Sbjct: 489 GPEVDGSTTLTGLPAGLAVGDLVTAEVVGSEGVDLVAQ 526



 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 36/142 (25%), Positives = 56/142 (39%), Gaps = 4/142 (2%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
              + + GC  N  DS  +     + G+  V    DAD +V+NTC   E A +     L 
Sbjct: 19  TVALVTLGCARNDVDSEELAGRLEAGGFRLVEDAADADTVVVNTCGFVEAAKKDSVDTLL 78

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
              + K+S    G    VV  GC+A+  GE++    P  + V+G   Y  + + L     
Sbjct: 79  AASDYKDS----GRTQAVVAVGCLAERYGEQLAEALPETDAVLGFDDYADISDKLRSILS 134

Query: 146 GKRVVDTDYSVEDKFERLSIVD 167
           G +          K   L+  D
Sbjct: 135 GTKHQAHVPRDRRKLLPLAPAD 156


>gi|289751387|ref|ZP_06510765.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
 gi|289691974|gb|EFD59403.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
          Length = 319

 Score =  228 bits (582), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 95/266 (35%), Positives = 146/266 (54%), Gaps = 12/266 (4%)

Query: 9   GVAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLN 68
           GV    +    +    + + V++YGCQMNV+DS R+  +  + GY R     +AD++V N
Sbjct: 9   GVTGEGAGPPVRRAPARTYQVRTYGCQMNVHDSERLAGLLEAAGYRRATDGSEADVVVFN 68

Query: 69  TCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVV 128
           TC +RE A  ++Y  L  +   K +      D+ + V GC+AQ + + +LRR+P V+VV 
Sbjct: 69  TCAVRENADNRLYGNLSHLAPRKRA----NPDMQIAVGGCLAQKDRDAVLRRAPWVDVVF 124

Query: 129 GPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
           G      LP LLERAR  K           +F          +R+    A+++I  GC+ 
Sbjct: 125 GTHNIGSLPTLLERARHNKVAQVEIAEALQQF----PSSLPSSRESAYAAWVSISVGCNN 180

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG----EK 244
            CTFC+VP  RG E+ RS + ++ E R L+++GV E+TLLGQNVNA+     D      +
Sbjct: 181 SCTFCIVPSLRGREVDRSPADILAEVRSLVNDGVLEVTLLGQNVNAYGVSFADPALPRNR 240

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHP 270
             F++LL +  +I GL R+R+T+ HP
Sbjct: 241 GAFAELLRACGDIDGLERVRFTSPHP 266


>gi|71996771|ref|NP_740783.2| hypothetical protein Y92H12BL.1 [Caenorhabditis elegans]
 gi|75017352|sp|Q8MXQ7|CDKAL_CAEEL RecName: Full=CDKAL1-like protein
 gi|39752835|gb|AAM81103.2|AC084268_1 Hypothetical protein Y92H12BL.1 [Caenorhabditis elegans]
          Length = 425

 Score =  228 bits (582), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 100/364 (27%), Positives = 175/364 (48%), Gaps = 18/364 (4%)

Query: 105 VAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLS 164
           +AGCV+QA   E   +   V++V G +   R+ E++     G +V     +  D    L 
Sbjct: 1   MAGCVSQAAPSEPWLQ--NVSIV-GVKQIDRIVEVVGETLKGNKVRLLTRNRPDAVLSLP 57

Query: 165 IVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEAR-KLIDNGVC 223
                  RK  +   L+I  GC   CT+C     RG  +S  L+ +V++AR    D GV 
Sbjct: 58  -----KMRKNELIEVLSISTGCLNNCTYCKTKMARGDLVSYPLADLVEQARAAFHDEGVK 112

Query: 224 EITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI---KGLVRLRYTTSHPRDMSDCLIKA 280
           E+ L  +++ AW G+ +        DLL  L ++     ++RL  T           I  
Sbjct: 113 ELWLTSEDLGAW-GRDI---GLVLPDLLRELVKVIPDGSMMRLGMTNPPYILDHLEEIAE 168

Query: 281 HGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFP 340
             +   +  +LH+PVQS SD +L  M R ++   + QI D + +  P+I I++D I+ FP
Sbjct: 169 ILNHPKVYAFLHIPVQSASDAVLNDMKREYSRRHFEQIADYMIANVPNIYIATDMILAFP 228

Query: 341 GETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLRE 400
            ET +DF  +M+LV K  +   F  +Y PR GTP + + +++D     +R   + +  R 
Sbjct: 229 TETLEDFEESMELVRKYKFPSLFINQYYPRSGTPAARL-KKIDTVEARKRTAAMSELFRS 287

Query: 401 QQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKI 460
               + D  +G++  VL+ +   +K   VG +   + +++  +   +G+ I+VR+T V  
Sbjct: 288 -YTRYTDERIGELHRVLVTEVAADKLHGVGHNKSYEQILVPLEYCKMGEWIEVRVTAVTK 346

Query: 461 STLY 464
            ++ 
Sbjct: 347 FSMI 350


>gi|297516710|ref|ZP_06935096.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Escherichia
           coli OP50]
          Length = 209

 Score =  228 bits (582), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 100/218 (45%), Positives = 143/218 (65%), Gaps = 11/218 (5%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++  +K++GCQMN YDS +M D+  +  GY+  +  ++AD+++LNTC IREKA EKV+
Sbjct: 1   MTKKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTDVAEEADVLLLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LGR + LK        DL++ V GCVA  EGE I +R+  V+++ GPQT +RLPE++ 
Sbjct: 61  HQLGRWKLLKEK----NPDLIIGVGGCVASQEGEHIRQRAHYVDIIFGPQTLHRLPEMIN 116

Query: 142 RARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
             R  +  VVD  +   +KF+RL        R  G TAF++I EGC+K+CT+CVVPYTRG
Sbjct: 117 SVRGDRSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTYCVVPYTRG 171

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK 238
            E+SR    ++ E  +L   GV E+ LLGQNVNAWRG+
Sbjct: 172 EEVSRPSDDILFEIAQLAAQGVREVNLLGQNVNAWRGE 209


>gi|257076152|ref|ZP_05570513.1| oxidoreductase [Ferroplasma acidarmanus fer1]
          Length = 400

 Score =  228 bits (581), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 107/445 (24%), Positives = 190/445 (42%), Gaps = 50/445 (11%)

Query: 26  RFFVKSYGCQMNVYDSL-RMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + + +SYGC +   +S   +  +   +  + VNS ++ADL ++ TC + +   +++   +
Sbjct: 2   KIYFESYGCTLQKSESSLYLNKLLKDENNQIVNSPEEADLSLIGTCVVIKHTEDRMVKRI 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             +  +            V V GC+A   G  I   +  V   + P+ +    E      
Sbjct: 62  SSLSKV---------SGNVQVLGCLATVNGNTIESGNVQV---LKPREFRSFYE------ 103

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
                +D      D ++ +                  I +GC   C FC+    RG  +S
Sbjct: 104 ---GDLDGIEIKSDIYDGIP-----------------INQGCTGSCNFCISHIARGKLLS 143

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R + ++V++    +D  + EI +   +  A  GK +       ++L+  +S I     LR
Sbjct: 144 RGIDKIVNQVNMELDRNIKEIRISSLDTAA-YGKDI---GTDLAELVNRISSIDRDFYLR 199

Query: 265 YTTSHPR---DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
                PR   D+ D L+ A+   D +  +LHLPVQS  + +L +MNR +T  E   +  +
Sbjct: 200 VGMLEPRNTYDILDKLVDAYR-HDRVFKFLHLPVQSAENNVLSAMNREYTIEEAEAVWQK 258

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
                PD++I++D I+G+  ++   F  TM  ++K         ++SPR  T   N    
Sbjct: 259 FHDAFPDMSIATDIILGYYNDSRAGFEKTMKFLEKYNPDIINVTRFSPRPYTKDYNKTP- 317

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
           ++ N+  E    +    REQ     D+ +G+  +VLI + GK  G +VGR    + VVL 
Sbjct: 318 LNSNLLKEWSNEIISLHREQMEKKLDSYLGREEKVLITEKGK-NGTMVGRDINYRPVVLK 376

Query: 442 SKNHNIGDIIKVRITDVKISTLYGE 466
                  +I K  I     + L GE
Sbjct: 377 GNYEKYSEI-KCTIVSHGSNYLIGE 400


>gi|239907919|ref|YP_002954660.1| hypothetical protein DMR_32830 [Desulfovibrio magneticus RS-1]
 gi|239797785|dbj|BAH76774.1| hypothetical protein [Desulfovibrio magneticus RS-1]
          Length = 627

 Score =  227 bits (580), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 107/429 (24%), Positives = 186/429 (43%), Gaps = 32/429 (7%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P+RF++ + GC++N Y++  + + F ++G+    S  DAD IVL +C +  +A  +    
Sbjct: 6   PRRFWLATLGCKVNQYEARALAEAFAAKGWSPAPSPADADRIVLISCAVTARAESESRRL 65

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
              +        +      V   GC A           P     +G      +P+    A
Sbjct: 66  ARAL------IREAKPGTEVAATGCAA--------AVHPEAFAALGA---VPMPDKDRLA 108

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
                +        D F  L++   GY+R R   A L IQ+GC   CT+C+VP  RG  +
Sbjct: 109 AASDTLAPCPPRPGDHFPNLAVA--GYDRAR---ALLKIQDGCSHGCTYCIVPAARGPSV 163

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDL----LYSLSEIKG 259
           SR    ++ EAR+L+D G  E+ L G N+  + G  L      +  +       L+    
Sbjct: 164 SRPYPAILAEARRLLDAGHAELGLTGINLGHF-GPDLAPPMSFWRLVADLERDLLASHGP 222

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR-HTAYEYRQI 318
             RLR  +  P  +    +   G+   +  +LH+ +QS    +L +MNRR + A      
Sbjct: 223 AFRLRLGSLDPAMLDAEGLAVLGESRRVCRHLHISLQSADPGVLGAMNRRPNDADAVSFF 282

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           +D++      +A+  D + GFPGE D    AT   + ++  + A  F YS R GTP + M
Sbjct: 283 VDKLGMKWGRMALGLDLLAGFPGEADTAHAATAAFLTRLPVSYAHVFPYSRRPGTPAATM 342

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQ-IIEVLIEKHGKEKGKLVGRSPWLQS 437
             Q+ + +K  R   L++   ++  +F      +  +EV +E      G   GR  ++  
Sbjct: 343 AGQLPKEIKTRRAAELRRTAEDKARAFLTRLATEDRLEVAVECADPAAGS-CGR--YVDC 399

Query: 438 VVLNSKNHN 446
             +++   +
Sbjct: 400 RFVDAPPPD 408


>gi|213023715|ref|ZP_03338162.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Salmonella enterica
           subsp. enterica serovar Typhi str. 404ty]
          Length = 245

 Score =  227 bits (580), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 118/243 (48%), Positives = 158/243 (65%), Gaps = 10/243 (4%)

Query: 68  NTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVV 127
           NTC IREKA EKV+  LGR R LK        DL++ V GCVA  EGE I +R+  V+++
Sbjct: 1   NTCSIREKAQEKVFHQLGRWRLLKEK----NPDLIIGVGGCVASQEGEHIRQRAHYVDII 56

Query: 128 VGPQTYYRLPELLERARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGC 186
            GPQT +RLPE++   R  +  VVD  +   +KF+RL        R  G TAF++I EGC
Sbjct: 57  FGPQTLHRLPEMINSVRGDRSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGC 111

Query: 187 DKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT 246
           +K+CT+CVVPYTRG E+SR    ++ E  +L   GV E+ LLGQNVNAWRG+  DG   T
Sbjct: 112 NKYCTYCVVPYTRGEEVSRPSDDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTTGT 171

Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306
           F+DLL  ++ I G+ R+R+TTSHP + +D +I+ + D   L+ +LHLPVQSGSDR+L  M
Sbjct: 172 FADLLRLVAAIDGIDRIRFTTSHPIEFTDDIIEVYRDTPELVSFLHLPVQSGSDRVLNLM 231

Query: 307 NRR 309
              
Sbjct: 232 GPP 234


>gi|303327235|ref|ZP_07357677.1| RNA modification enzyme, MiaB-family [Desulfovibrio sp. 3_1_syn3]
 gi|302863223|gb|EFL86155.1| RNA modification enzyme, MiaB-family [Desulfovibrio sp. 3_1_syn3]
          Length = 493

 Score =  227 bits (578), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 102/381 (26%), Positives = 174/381 (45%), Gaps = 40/381 (10%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +FF+ ++GC++N Y+S  + + +   G E  +   +AD++ +N+C I  K      + + 
Sbjct: 27  KFFIATFGCKVNQYESQSLREAWQKLGGEECDVPGEADVLCVNSCAITAKGERDARNAVF 86

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVA-------------QAEGEEILRRSPIVNVVVGPQT 132
           R+R       +E     +++ GC A              AE + ++ +     ++ GP  
Sbjct: 87  RLR-------REAPAARLILTGCAARLFTKFRPRPGAAWAEPDLLVPQEDKSRLLRGPWP 139

Query: 133 YYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTF 192
               P L                 E            + R R V   L +Q+GC   CT+
Sbjct: 140 EGNAPGL---------PAAESIRAEAPANFPPFRISSFRRARPV---LKVQDGCAHRCTY 187

Query: 193 CVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLY 252
           C+VP TRG   SR+  +V+DEAR+L+  G  E+ L G N+    G+ +  +   F DLL 
Sbjct: 188 CIVPLTRGRPRSRAPQEVLDEARRLLRAGHAELMLSGVNLR-QYGRDVP-DYGGFWDLLR 245

Query: 253 SLS-----EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307
            L      E  G  RLR ++  P  +    ++      +L P+LH+ +Q  S  +LK M 
Sbjct: 246 FLDGHLAPEFAGRARLRISSLEPSQLDRRGLETLTACRMLCPHLHISLQHASPAVLKRMG 305

Query: 308 RR-HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
           R  +TA    + +  + +  P + + +D +VGFPGETD+D R  ++LV ++  + A  F 
Sbjct: 306 RGHYTAGMLEEGVAALAAHWPRMGLGADILVGFPGETDEDLRLLLELVQRLPLSYAHVFP 365

Query: 367 YSPRLGTPGSNMLEQVDENVK 387
           YS R GT        + + +K
Sbjct: 366 YSRRPGTAAEAFAGHLPQALK 386


>gi|158313057|ref|YP_001505565.1| RNA modification protein [Frankia sp. EAN1pec]
 gi|158108462|gb|ABW10659.1| RNA modification enzyme, MiaB family [Frankia sp. EAN1pec]
          Length = 595

 Score =  227 bits (578), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 82/308 (26%), Positives = 138/308 (44%), Gaps = 11/308 (3%)

Query: 168 GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITL 227
           G           L +  GCD+ C FC +P  RG  +SR   +V+ EA  L   G  E+ L
Sbjct: 233 GRRRLTSSPVVPLKLSSGCDRRCAFCAIPSFRGSHVSRRPEEVLAEAEWLAGQGARELVL 292

Query: 228 LGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL 287
           + +N  +  GK L G+      LL  L+ + G+VR+R     P ++   L++       L
Sbjct: 293 VSENSTS-YGKDL-GDLRALEKLLPLLAAVPGIVRVRTVYLQPAELRPSLLEVLLTTPGL 350

Query: 288 MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDF 347
            PYL L  Q  S  +L+ M R   + ++  ++ R R++ PD+   S+ IVGFPGETD+D 
Sbjct: 351 APYLDLSFQHASPAVLRRMRRFGGSTDFLDLLRRARALLPDLGARSNVIVGFPGETDEDV 410

Query: 348 RATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFND 407
              ++ +++        F YS   GT  + M   VD      R   +   + +   +  +
Sbjct: 411 DILVNFLERADLDAVGVFGYSDEEGTEAAGMAGHVDPEEIESRRAEVTDLVEQLTAARAE 470

Query: 408 ACVGQIIEVLIEKHGKEKGK-LVGR----SPWLQSVVLNS----KNHNIGDIIKVRITDV 458
             +G  +EVL+E+     G    G     +    +V L +       ++GD+++ R+   
Sbjct: 471 RRIGTTVEVLVEEVAGGLGYGCAGHQQADADGSCTVRLPAGGPPGGVSVGDLVEARVVAA 530

Query: 459 KISTLYGE 466
           +   L  E
Sbjct: 531 EGVDLIAE 538



 Score = 82.7 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/166 (22%), Positives = 61/166 (36%), Gaps = 25/166 (15%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +R  + + GC  N  DS  +     + G++ V+   DAD +++NTC   E A +     L
Sbjct: 7   RRVALVTLGCSRNEVDSEELAARLAADGWDLVDDAADADAVLVNTCGFVEAAKKDSIDAL 66

Query: 85  GRIRNLKNSRIKE-----------------------GGDLLVVVAGCVAQAEGEEILRRS 121
                L+                             GG   VV  GC+A+  G E+    
Sbjct: 67  LAADALRGPGGNGPGDGESGDDGPGGGATTGRATASGGPRAVVAVGCMAERYGRELADTL 126

Query: 122 PIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVD 167
           P  + V+G   Y R+   L+ A  G       ++  D+   L I  
Sbjct: 127 PEADAVLGFDAYPRISAHLDAALAGSAP--ASHTPRDRRTLLPISP 170


>gi|253742055|gb|EES98909.1| tRNA 2-methylthioadenosine synthase [Giardia intestinalis ATCC
           50581]
          Length = 525

 Score =  226 bits (576), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 98/509 (19%), Positives = 199/509 (39%), Gaps = 63/509 (12%)

Query: 17  IVDQCIVPQ----RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNS------MDDA---D 63
           +  Q  +P     R  + + GC  N  +S  +     + G    +S       + A   D
Sbjct: 12  VPPQSAIPLLANVRVMMVTMGCGHNAAESDIIASALQTAGALITHSNGKYITPEGAKDVD 71

Query: 64  LIVLNTCHIREKAAEKVYSFLGR-----------------IRNLKNSRIKEGGDLLVVVA 106
           ++ + +C ++  + +K +  + +                    + +   +      ++++
Sbjct: 72  VLYITSCTVKNPSEDKAFVHVQKGLEAGVVVVLGGCVPQSYGAVNDELRRASASKQLIIS 131

Query: 107 GCVAQAEGEEILRRS-PIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSI 165
           G + Q    ++ R     +++     ++   P L       K  V    S   K     I
Sbjct: 132 GVLTQQWLADLPRLLREAIDLHTLSDSHLLQPALRMTQPSDKIGVPAAISYVTKEATKDI 191

Query: 166 -----VDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN 220
                     +R   +   +    GC   CT+C   ++RG   S  L  ++   R  + +
Sbjct: 192 NVEYLKCTPIHRANPIIDIIATGSGCMGSCTYCKTCHSRGRLRSVPLDTLLARIRSSLAD 251

Query: 221 -GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK----GLVRLRYTTSHPRDMSD 275
             + E+ L G++  AW G+            +  L E +     ++++  T        +
Sbjct: 252 PVIRELWLTGEDTLAW-GRDSGTTFAALLQEIQKLLETENPTHKMLKIGMTDPDSVINQE 310

Query: 276 CLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDF 335
             + +      +  +LHLPVQSGSDRIL  M R +    +     +++S  PD+ + +D 
Sbjct: 311 DSLISFMQCKYVYKFLHLPVQSGSDRILTLMRRHYDIGTFLASCSKLQSAIPDLCLDTDI 370

Query: 336 IVGFPGETDDDFRATMDLVDKI-----GYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER 390
           I GFPGETD+D   +++L   +      +      +Y  R  TP ++M EQV  + K ER
Sbjct: 371 ICGFPGETDEDHAQSLNLFRNLSKDAPRFQVVNITQYYARKNTPAASM-EQVPASKKRER 429

Query: 391 LLCLQKKLREQQVSFNDACVGQIIEVLI------EKHGKEKGKLVGRSPWLQSVVLN--- 441
              + + ++       D   GQ+ ++++      E HG++ G   G++    +V +    
Sbjct: 430 TREMSEVVKGSF--RRDQYHGQVHDIMVLEKLQTEGHGRKYG---GKTYNNITVAIEIDD 484

Query: 442 -SKNHNIGDIIKVRITDVKISTLYGELVV 469
            + +  +G  ++VRI       L G ++ 
Sbjct: 485 QAASLELGTYVRVRIIGSTKVALIGLVIA 513


>gi|312797208|ref|YP_004030130.1| tRNA 2-methylthioadenosine synthase [Burkholderia rhizoxinica HKI
           454]
 gi|312168983|emb|CBW75986.1| tRNA 2-methylthioadenosine synthase [Burkholderia rhizoxinica HKI
           454]
          Length = 197

 Score =  225 bits (575), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 73/190 (38%), Positives = 113/190 (59%), Gaps = 5/190 (2%)

Query: 285 DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETD 344
             L+ +LHLPVQ GSDRIL +M R +T  EY+ I+ R+R++RP +++S+DFIVGFPGETD
Sbjct: 2   PKLVSHLHLPVQHGSDRILMAMKRGYTVLEYKSIVRRLRAIRPQLSLSTDFIVGFPGETD 61

Query: 345 DDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVS 404
           DD   TM L+D++ Y  +FSF +SPR GTP + + +    +VK  RL  LQ  +      
Sbjct: 62  DDHAKTMKLIDEVQYDTSFSFIFSPRPGTPAATLHDDTPRDVKLARLQQLQAAIEAHAAK 121

Query: 405 FNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLNSKNH----NIGDIIKVRITDVK 459
            +++ VG +  +L+E+   K+  +L GR+   + V   +        +G ++ V I    
Sbjct: 122 ISESMVGTVQRILVERSARKDPNELAGRTENNRVVNFPAPQASHARLLGQMVDVEIVHAY 181

Query: 460 ISTLYGELVV 469
             +L GEL +
Sbjct: 182 PHSLRGELAL 191


>gi|285808445|gb|ADC35971.1| conserved hypothetical protein [uncultured bacterium 98]
          Length = 328

 Score =  225 bits (574), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 85/289 (29%), Positives = 144/289 (49%), Gaps = 9/289 (3%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
           L +Q GC++ C++C++P TRG   S  L  V++  R+    G  EI + G ++ +  G+ 
Sbjct: 34  LRVQTGCEEHCSYCIIPSTRGRGRSHPLPVVLENIRRGTAAGYKEIAITGVHLGS-YGRD 92

Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
           L G+  T   L+ +L+E    V  R ++  P D +  +++       L P+ HLP+Q GS
Sbjct: 93  L-GDGTTLDALVRALAEWPEDVLFRISSLEPMDCTREVVRLIAGSGRLAPHFHLPLQHGS 151

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
           D +L +M R +TA  Y  +++ I++  PD +I +D IVGFPGETDD F  T+  V+++ +
Sbjct: 152 DAMLSAMGRPYTAAYYSDLLEVIQARLPDASIGTDIIVGFPGETDDHFARTLVAVERLPF 211

Query: 360 AQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419
           +    F YS R GT  +++  +VD  V   R   ++        SF  A +G     L  
Sbjct: 212 SHVHVFPYSDRPGTAAASLPGKVDGTVVRARARAVRDAGSRLARSFQSAQIGTTRRAL-- 269

Query: 420 KHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
               +  + V  +     + L   +    + ++VRI       L G +V
Sbjct: 270 -TIDDGSRAV--TDNYLKLQLPPGHGR-NEWVRVRIEG-TPGALEGVVV 313


>gi|99034378|ref|ZP_01314398.1| hypothetical protein Wendoof_01000800 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 198

 Score =  225 bits (574), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 101/191 (52%), Positives = 139/191 (72%), Gaps = 2/191 (1%)

Query: 277 LIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFI 336
           L  AH +   LMP++HLPVQSGS++IL +MNR+HTA EY +IIDR R ++P+I  SSDFI
Sbjct: 4   LYLAHAEEPKLMPFVHLPVQSGSNKILHAMNRKHTAEEYLEIIDRFRKLKPEIEFSSDFI 63

Query: 337 VGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQK 396
           VGFPGET+ DF  TM LV+K+ YAQA+SFKYSPR GTPG+   +QV E VK ERLL LQK
Sbjct: 64  VGFPGETEKDFEETMKLVEKVRYAQAYSFKYSPRPGTPGAERKDQVPEEVKTERLLRLQK 123

Query: 397 KLREQQVSFNDACVGQIIEVLI-EKHGKEKGKLVGRSPWLQSVVLNSKNHNIGD-IIKVR 454
            + +QQ+ FN + VG+ I VL  +K GK + +++G+SP++QSV ++       D I+ V+
Sbjct: 124 LISKQQLEFNQSMVGKTIPVLFSDKKGKHQNQIIGKSPYMQSVCIDDSEDKYRDKIVNVK 183

Query: 455 ITDVKISTLYG 465
           + + + S+L G
Sbjct: 184 VLEARQSSLLG 194


>gi|218682291|ref|ZP_03529892.1| MiaB-like tRNA modifying enzyme [Rhizobium etli CIAT 894]
          Length = 302

 Score =  224 bits (572), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 94/319 (29%), Positives = 146/319 (45%), Gaps = 29/319 (9%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
             V ++GC++N Y+S  M+      G          + I++NTC +  +A  +    +  
Sbjct: 4   VEVITFGCRLNTYESEVMKAQAEKAGLN--------NAILVNTCAVTGEAVRQARQAI-- 53

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT------YYRLPELL 140
                    ++     ++V GC AQ E +     +  V+ V+G +       Y  LP+  
Sbjct: 54  -----RRARRDNPHARIIVTGCAAQTEKQTFAEMA-EVDAVLGNEEKLSSTSYRSLPDFG 107

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
             A    RV D         + +  +DG       V AF+ +Q GCD  CTFC++PY RG
Sbjct: 108 VSAEEKLRVNDIMSVKATAPQMVRHIDGH------VRAFIQVQNGCDHRCTFCIIPYGRG 161

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
              S  +  VVD+ARKL D+G CEI L G +  +  G  L G           L +I  +
Sbjct: 162 NSRSVPMGAVVDQARKLADSGYCEIVLTGVDATS-YGADLPGTPTLGLLAKTLLKQIPEI 220

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            RLR ++    +    L+    D    MP+LHL +Q G D ILK M RRH+  +  + I+
Sbjct: 221 RRLRLSSIDSIEADAHLMDLIADEPRFMPHLHLSLQHGDDMILKRMKRRHSRADALRFIE 280

Query: 321 RIRSVRPDIAISSDFIVGF 339
             R +RP+++  +D I GF
Sbjct: 281 EARHLRPEMSFGADMIAGF 299


>gi|291534092|emb|CBL07205.1| 2-methylthioadenine synthetase [Megamonas hypermegale ART12/1]
          Length = 278

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 95/256 (37%), Positives = 147/256 (57%), Gaps = 12/256 (4%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           + +  YGCQMN  D  R        GY+    ++DAD+I++NTC +RE A +K+Y  +G 
Sbjct: 12  YKILPYGCQMNFSDGERFAGQLERMGYKPAEKLEDADIIIINTCCVRESAEKKIYGKIGE 71

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           I++LK        DL++ + GC+AQ +G+ I +++  V+ V+G    Y LP +LE     
Sbjct: 72  IKHLKQQ----KPDLILGITGCMAQKDGDAIFKKASHVDFVLGTNKMYDLPAVLEEIFAS 127

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           +  +       D    +   +        + AF+ I  GC+ FCT+C+VPY RG E SR+
Sbjct: 128 RGHIVKLAGDYDMPPNVEPAEN-----NSLFAFIPIMYGCNNFCTYCIVPYVRGRERSRA 182

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
             ++V E  KL  NGV E+TLLGQNVN++   G D +   F+DLL  + +I+G+ R+RY 
Sbjct: 183 PQEIVAEITKLAQNGVKEVTLLGQNVNSY---GKDRDDADFADLLAMVDKIEGIERIRYM 239

Query: 267 TSHPRDMSDCLIKAHG 282
           TSHPRD++D +I+   
Sbjct: 240 TSHPRDLTDKVIETIK 255


>gi|260587677|ref|ZP_05853590.1| tRNA-I(6)A37 modification enzyme MiaB [Blautia hansenii DSM 20583]
 gi|260541942|gb|EEX22511.1| tRNA-I(6)A37 modification enzyme MiaB [Blautia hansenii DSM 20583]
          Length = 312

 Score =  224 bits (570), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 93/278 (33%), Positives = 153/278 (55%), Gaps = 13/278 (4%)

Query: 12  HMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCH 71
            +V +  ++   P    + ++GCQMN  DS ++  +    GY  V   ++AD ++ NTC 
Sbjct: 45  QLVKEQSEKLGRPLTANITTFGCQMNARDSEKLVGILERIGYVEVPD-ENADFVIYNTCT 103

Query: 72  IREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVG 129
           +RE A  +VY  LG + +LK    K+   +++ + GC+ Q     E++ +    VN++ G
Sbjct: 104 VRENANLRVYGRLGYLHSLK----KKNPHMMIGLCGCMMQEPQVVEKLKKSYSFVNLIFG 159

Query: 130 PQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKF 189
               Y+  EL+  +    R++   +   DK     + D    RK    + + I  GC+ F
Sbjct: 160 THNIYKFAELVVSSLLSDRMIIDIWKDTDKI----VEDLPVERKYPFKSGVNIMFGCNNF 215

Query: 190 CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSD 249
           C++C+VPY RG E SR+   +V E  +L+ +GV E+ LLGQNVN+  GK LD E  TF+ 
Sbjct: 216 CSYCIVPYVRGRERSRNPKDIVREIERLVKDGVVEVMLLGQNVNS-YGKNLD-EPMTFAQ 273

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL 287
           LL  + +I+GL R+R+ TSHP+D+SD LI+   +   +
Sbjct: 274 LLTEIEKIEGLKRIRFMTSHPKDLSDELIEVMKNSKKI 311


>gi|326917127|ref|XP_003204853.1| PREDICTED: CDK5 regulatory subunit-associated protein 1-like
           1-like, partial [Meleagris gallopavo]
          Length = 327

 Score =  222 bits (566), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 89/304 (29%), Positives = 147/304 (48%), Gaps = 14/304 (4%)

Query: 100 DLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVED- 158
           +  VV+AGCV QA+  +   +      ++G Q   R+ E++E    G  V       ++ 
Sbjct: 6   NKKVVLAGCVPQAQPRQDYLKG---LSIIGVQQIDRVVEVVEETIKGHSVRLLGQKKDNG 62

Query: 159 KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLI 218
           K    + +D    RK  +   ++I  GC   CT+C   + RG   S  + ++VD A++  
Sbjct: 63  KRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGDLASYPIEELVDRAKQSF 122

Query: 219 DNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK----GLVRLRYTTSHPRDMS 274
             GVCEI L  ++  A+              L+ ++ E      G+    Y   H  +M+
Sbjct: 123 QEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLVEAIPEGAMLRLGMTNPPYILEHLEEMA 182

Query: 275 DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSD 334
             L     +   +  +LH+PVQS SD +L  M R +   ++R+++D ++   P I I++D
Sbjct: 183 KIL-----NHPRVYAFLHIPVQSASDSVLMDMKREYCVADFRRVVDFLKEKVPGITIATD 237

Query: 335 FIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCL 394
            I GFPGETD+DF+ TM LV++  +   F  ++ PR GTP + M  QV   VK +R   L
Sbjct: 238 IICGFPGETDEDFQETMKLVEQYKFPSLFINQFYPRPGTPAAKMH-QVPAAVKKQRTKDL 296

Query: 395 QKKL 398
            +  
Sbjct: 297 SQLF 300


>gi|301629102|ref|XP_002943687.1| PREDICTED: hypothetical protein LOC100490174 [Xenopus (Silurana)
            tropicalis]
          Length = 1629

 Score =  222 bits (565), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 77/286 (26%), Positives = 133/286 (46%), Gaps = 15/286 (5%)

Query: 152  TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVV 211
             D +V++  + +        +     A+L I EGC+  CTFC++P  RG  +SR +  V+
Sbjct: 736  IDDAVKESLDTIGEALAENGKAPRHYAYLKISEGCNHRCTFCIIPSMRGDLVSRPVGDVL 795

Query: 212  DEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYSLSEI----KG 259
             EA+ L + GV E+ ++ Q+ +A+      R    DG+  K    +L  +L  +      
Sbjct: 796  KEAKALFEGGVKELLVISQDTSAYGVDVKYRTGFWDGKPIKTRTLELARTLGGLAASYGA 855

Query: 260  LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
             VRL Y   +P       + A G   +++PYL +P Q     +LK M R  +  +  + I
Sbjct: 856  WVRLHYVYPYPSVDEIIPLMAEG---LILPYLDVPFQHSHPDVLKRMKRPASGEKNLERI 912

Query: 320  DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
             R R++ PD+ I S FI GFPGET+++F+  +D + +    +A  F YS   GT  +++ 
Sbjct: 913  QRWRAMCPDLVIRSTFIAGFPGETEEEFQHLLDFMREAQIDRAGCFAYSDVQGTDANHLP 972

Query: 380  EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK 425
              +    +  R         E   +     VG  ++VL++      
Sbjct: 973  GMLPPEEREPRRARFMAVAEEVSSAKLRGRVGATMQVLLDAASNRG 1018



 Score = 82.3 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 21/103 (20%), Positives = 40/103 (38%), Gaps = 1/103 (0%)

Query: 5   IKLIGVAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADL 64
           I +   A+  +        P+  FV S GC   + DS  +     ++GY+   +   ADL
Sbjct: 669 IPMHSNAYAATATSAGARTPKIGFV-SLGCPKALTDSELILTQLSAEGYQTSKTFAGADL 727

Query: 65  IVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAG 107
           +++NTC   + A ++    +G          +    L +    
Sbjct: 728 VIVNTCGFIDDAVKESLDTIGEALAENGKAPRHYAYLKISEGC 770


>gi|86171407|ref|XP_966205.1| radical SAM protein, putative [Plasmodium falciparum 3D7]
 gi|46361171|emb|CAG25035.1| radical SAM protein, putative [Plasmodium falciparum 3D7]
          Length = 860

 Score =  221 bits (563), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 89/394 (22%), Positives = 169/394 (42%), Gaps = 33/394 (8%)

Query: 88  RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147
           +N K     EG ++ ++V GCV QA  E+ +     V++V G     ++ +++E    G 
Sbjct: 484 KNKKKKIHVEGKNIKIIVCGCVPQA--EKDMEIFENVSLV-GVNNIDKIVDVVENVINGY 540

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
            V     S +     L  +     RK      + I  GC   CT+C   + RG   S ++
Sbjct: 541 NVQYLKTSKKMTSLNLPKI-----RKNKYIEIININNGCLGNCTYCKTKFARGDLSSYNI 595

Query: 208 SQVVDEARK-LIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK-------- 258
             + D       +  + EI L  ++  A  G  ++ +      L   L  ++        
Sbjct: 596 RDITDRITYVCNEENIKEIWLTSEDTGA-YGIDINTDIVNL--LKNILKSVEHTNVMIRL 652

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           G+    Y   H +D+   L         +  ++H+PVQSGS+ +LK+MNR +T  ++  +
Sbjct: 653 GMTNPPYILKHIKDICTLL-----KHKNMYEFIHIPVQSGSNNVLKNMNREYTIEDFIFL 707

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           ++ +R   P+I IS+D I GFP E++ D + T+ L+    +      ++ PR GT   NM
Sbjct: 708 VENLRKYVPNITISTDIICGFPYESEQDHQNTVHLIKNFQFPILNISQFYPRRGTVAYNM 767

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACV-GQIIEVLIEKHGKEKGKLVGRSPWLQS 437
            ++++  +  +R   + +         N   +   I +VL  +   +   ++G +     
Sbjct: 768 -KKINTKIVKKRSRDVTEAF--LSYEHNYKFLQNTIQQVLFTEISSKSEHIIGHTKQYVK 824

Query: 438 VVLNSKN----HNIGDIIKVRITDVKISTLYGEL 467
           V+L ++N      +G+    +I       +  EL
Sbjct: 825 VLLPNENNKNIELLGNFATCKILSTHKWHVVAEL 858



 Score = 81.9 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 37/65 (56%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + + KS+GC  N  DS  M  +  + G++ V  +++ D+ ++N+C ++  + E + + + 
Sbjct: 244 KIYFKSFGCAHNSSDSEFMMGLLANYGFKFVKKIEECDICIVNSCTVKNPSEESMKTIIN 303

Query: 86  RIRNL 90
            ++ L
Sbjct: 304 YVKKL 308


>gi|48477501|ref|YP_023207.1| oxidoreductase [Picrophilus torridus DSM 9790]
 gi|48430149|gb|AAT43014.1| hypothetical oxidoreductase [Picrophilus torridus DSM 9790]
          Length = 426

 Score =  221 bits (563), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 98/449 (21%), Positives = 189/449 (42%), Gaps = 49/449 (10%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           I   + + +SYGC +   ++    +     G E V+  + AD+ V+ TC + +   + + 
Sbjct: 24  IKSMKVYFESYGCTLEKSEAALYVNKMLQDGGELVDDPERADVSVIGTCVVIKHTEDHML 83

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             +G +     +         V+V GC+A   G  +   +                    
Sbjct: 84  KRIGELSKKSRN---------VLVLGCLATVNGNTLESEN-------------------- 114

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
                   +      E +      +D    ++  +   + I +GC   C FC+   +RG 
Sbjct: 115 --------IRVIKPREFRSFYTGTLDDVKIKEPSILDGIPINQGCTGHCNFCISHISRGK 166

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
            +SRS  ++V + R  I++G+ EI +   +  A  GK ++      +DL+ S++ +    
Sbjct: 167 LLSRSPEKIVGQVRMQIESGIREIRITSLDTAA-YGKDIN---TDLADLINSITGLDVDF 222

Query: 262 RLRYTTSHPR---DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
            LR     PR   D+ + LI A+ + D +  +LHLPVQSG +RIL SMNR +   E   +
Sbjct: 223 MLRVGMMEPRNTYDILEKLIDAYKN-DKVFKFLHLPVQSGDNRILDSMNREYKIEEAGHV 281

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           I R +   PD+  S+D I G+  E  +    T   ++          ++SPR  TP  + 
Sbjct: 282 IKRFKEEFPDMVFSTDIIAGYYTEDSESMENTYKFIETYMPDIINITRFSPRPYTPDFS- 340

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSV 438
            + +  N+  E    + +  +E          G+++ V++ +  + +   + R    + V
Sbjct: 341 RKTMPSNITKEFSKKIMEMHKEYMDEKLSRYHGRMLNVMVTE--RTENAYLARDVNYRPV 398

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGEL 467
           ++   +  + D + V I D   + L G++
Sbjct: 399 IIKG-DVKLYDRLNVEIVDHGDTYLIGKI 426


>gi|302846252|ref|XP_002954663.1| hypothetical protein VOLCADRAFT_64943 [Volvox carteri f.
           nagariensis]
 gi|300260082|gb|EFJ44304.1| hypothetical protein VOLCADRAFT_64943 [Volvox carteri f.
           nagariensis]
          Length = 401

 Score =  221 bits (563), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 92/348 (26%), Positives = 159/348 (45%), Gaps = 23/348 (6%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSM-DDADLIVLNTCHIREKAAEKVYSFLG 85
            +VK++GC  N+ DS  M       GY R ++  + ADL ++N+C ++  +   + S + 
Sbjct: 9   VWVKTFGCSHNISDSEYMAGQLQDYGYRRESAGCNPADLWLINSCTVKGPSQAGMSSLIA 68

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
             R          G   ++VAGCV Q  G++ L     V+ V+G     R+ E +E    
Sbjct: 69  VGRA---------GGKRLLVAGCVPQ--GDKRLPELQGVS-VLGVTQIDRVVEAVEETLR 116

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G  V             L  +D    R+      + I  GC   CT+C   + RG   S 
Sbjct: 117 GNTVRLLAKK------ELPRLDLPKVRRNRHIEIVPISTGCLGACTYCKTKHARGHLGSY 170

Query: 206 SLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
             + +V+  R+   +  V EI +  ++  A  G+ +        D L ++    G   LR
Sbjct: 171 DPAALVERVRQAAADPWVREIWISSEDTGA-YGRDIGCSLPELLDALIAVLPPDGRTMLR 229

Query: 265 YTTSHPRDMSDCL--IKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
              ++P  + + L  + A      +  YLH+PVQSGSD +L SM R +T  E+R+++D +
Sbjct: 230 VGMTNPPYVLEHLEALSAALRHPCVFSYLHVPVQSGSDAVLDSMKREYTVAEFRRVVDTL 289

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370
            +  P + +++D I  FPGE+  D   T++L+ +  +      ++ PR
Sbjct: 290 LAGVPGMELATDIITAFPGESPGDHVRTLELLRQYRFPHTHISQFYPR 337


>gi|237750753|ref|ZP_04581233.1| conserved hypothetical protein [Helicobacter bilis ATCC 43879]
 gi|229373843|gb|EEO24234.1| conserved hypothetical protein [Helicobacter bilis ATCC 43879]
          Length = 412

 Score =  220 bits (562), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 102/419 (24%), Positives = 186/419 (44%), Gaps = 36/419 (8%)

Query: 44  MEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLV 103
           M     +  +E V S  +AD I++N+C +  KA  +V    G  R   +   K      V
Sbjct: 1   MISNLKN--HEIVASEIEADTIIINSCTVTNKADREVR---GYARKYSSEGKK------V 49

Query: 104 VVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERL 163
           +  GC  +  GE +     +VN V        + + L          +  +  +++  + 
Sbjct: 50  LFTGCGVKHSGENLFNN-GLVNGVFAHSHKESINDFLSSE-------NRVFLPKERVNKH 101

Query: 164 SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVC 223
                       V AF+ IQEGC+  C++C++P  RG   S S + ++D+ + L  +GV 
Sbjct: 102 VDTTLLPRVVGKVRAFIKIQEGCNFACSYCIIPSVRGSARSFSEAHILDQIKILEQSGVT 161

Query: 224 EITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGD 283
           E+ L G N+ +  G      K   + L+  + +I G++R+R  +  P  +    ++   +
Sbjct: 162 EVILTGTNIGS-YGLDT---KTHIATLIQKIHDISGILRIRLGSLEPSQIDSAFLE-ILE 216

Query: 284 LDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGET 343
           L+ L  +LH+ +Q  S+ +LK MNR++T     ++ + I S     ++ +D+I+G  GET
Sbjct: 217 LNKLERHLHIALQHTSESMLKIMNRKNTFERDLELFNAIASK--GFSLGTDYIIGHYGET 274

Query: 344 DDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN---MLEQVDENVKAERLLCLQKKLRE 400
            + F   +  ++K+       F YSPR GT  +     L QV  +V  ERL  +    + 
Sbjct: 275 KEIFDEAICNLEKLPLTHIHPFIYSPRFGTKSAKNELKLTQVKGDVAKERLRKITTITQR 334

Query: 401 QQVSFNDACVGQIIEVLIEK----HGKEKGKLVGRSPWLQSVVLNSKN--HNIGDIIKV 453
           + + F      + + VLIE       ++    VG   +   ++L  K+     G  + V
Sbjct: 335 KNLVFRQNLK-KPLSVLIEGKKAIKERDSSYFVGLDEYFNKMILPIKDDLDLKGKWVSV 392


>gi|221488386|gb|EEE26600.1| Radical SAM domain-containing protein, putative [Toxoplasma gondii
           GT1]
          Length = 867

 Score =  220 bits (561), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 82/346 (23%), Positives = 146/346 (42%), Gaps = 19/346 (5%)

Query: 127 VVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGC 186
           +VG     R+ E +E A  G  +            RL  +D    R+  +   + I  GC
Sbjct: 520 IVGVSAIDRIVEAVEEALKGNVIRLGGK------RRLPSLDLPKIRRNNLVEIVPISTGC 573

Query: 187 DKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT 246
              CT+C   + RG   S     +       ++ GV +I L  ++  A+   GLD +   
Sbjct: 574 LGSCTYCKTKHARGDLGSYPEEAIEKRVEASLEEGVKQIWLTSEDSGAY---GLDRQSSL 630

Query: 247 FSDLLYSLSEI-----KGLVRLRYTTSHPRDMSDCLIKAHG--DLDVLMPYLHLPVQSGS 299
              L   L  +        + LR   S+P  +   L  A        +  +LHLP+QSGS
Sbjct: 631 TGLLARLLRNVFDRKADSSLMLRVGMSNPPFLLQQLKSAVQVFSHPNVFEFLHLPLQSGS 690

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
           + +L +MNR +TA ++  +++ +    P + I++D I GFPGETD+D   T+ ++ K  +
Sbjct: 691 NDVLLAMNREYTAEQFEVVVETLLKHFPRMTIATDIICGFPGETDEDHERTLAIIRKFKF 750

Query: 360 AQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419
                 ++ PR GTP ++M +Q+   V   R   +      +  +  D  +     V   
Sbjct: 751 PVVNISQFYPRPGTPAASM-KQLPSQVVKRRSREVTALF--ESYTCYDWMLHTTQMVWFS 807

Query: 420 KHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYG 465
              ++    VG++     V+    +  +G    +R+T V+   +  
Sbjct: 808 STSEKSDHTVGQTKQYVKVLTPRDDALLGTCCLMRVTAVEKWHVVA 853



 Score = 88.5 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 37/63 (58%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           QR FVK++GC  N  DS  M  +  + GY  V+ M+DAD+ ++N+C ++  +   +YS +
Sbjct: 279 QRIFVKTFGCAHNQSDSEYMMGLLDAAGYTFVSRMEDADVCLINSCTVKSPSEFALYSVI 338

Query: 85  GRI 87
              
Sbjct: 339 QEA 341


>gi|237833257|ref|XP_002365926.1| radical SAM domain-containing protein [Toxoplasma gondii ME49]
 gi|211963590|gb|EEA98785.1| radical SAM domain-containing protein [Toxoplasma gondii ME49]
 gi|221508888|gb|EEE34457.1| Radical SAM domain-containing protein, putative [Toxoplasma gondii
           VEG]
          Length = 867

 Score =  220 bits (560), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 82/346 (23%), Positives = 146/346 (42%), Gaps = 19/346 (5%)

Query: 127 VVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGC 186
           +VG     R+ E +E A  G  +            RL  +D    R+  +   + I  GC
Sbjct: 520 IVGVSAIDRIVEAVEEALKGNVIRLGGK------RRLPSLDLPKIRRNNLVEIVPISTGC 573

Query: 187 DKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT 246
              CT+C   + RG   S     +       ++ GV +I L  ++  A+   GLD +   
Sbjct: 574 LGSCTYCKTKHARGDLGSYPEEAIEKRVEASLEEGVKQIWLTSEDSGAY---GLDRQSSL 630

Query: 247 FSDLLYSLSEI-----KGLVRLRYTTSHPRDMSDCLIKAHG--DLDVLMPYLHLPVQSGS 299
              L   L  +        + LR   S+P  +   L  A        +  +LHLP+QSGS
Sbjct: 631 TGLLARLLRNVFDRKADSSLMLRVGMSNPPFLLQQLKSAVQVFSHPNVFEFLHLPLQSGS 690

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
           + +L +MNR +TA ++  +++ +    P + I++D I GFPGETD+D   T+ ++ K  +
Sbjct: 691 NDVLLAMNREYTAEQFEVVVETLLKHFPRMTIATDIICGFPGETDEDHERTLAIIRKFKF 750

Query: 360 AQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419
                 ++ PR GTP ++M +Q+   V   R   +      +  +  D  +     V   
Sbjct: 751 PVVNISQFYPRPGTPAASM-KQLPSQVVKRRSREVTALF--ESYTCYDWMLHTTQMVWFS 807

Query: 420 KHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYG 465
              ++    VG++     V+    +  +G    +R+T V+   +  
Sbjct: 808 STSEKSDHTVGQTKQYVKVLTPRDDALLGTCCLMRVTAVEKWHVVA 853



 Score = 88.5 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 37/63 (58%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           QR FVK++GC  N  DS  M  +  + GY  V+ M+DAD+ ++N+C ++  +   +YS +
Sbjct: 279 QRIFVKTFGCAHNQSDSEYMMGLLDAAGYTFVSRMEDADVCLINSCTVKSPSEFALYSVI 338

Query: 85  GRI 87
              
Sbjct: 339 QEA 341


>gi|325118100|emb|CBZ53651.1| putative radical SAM domain-containing protein [Neospora caninum
           Liverpool]
          Length = 863

 Score =  219 bits (559), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 81/346 (23%), Positives = 145/346 (41%), Gaps = 19/346 (5%)

Query: 127 VVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGC 186
           +VG     R+ E +E A  G  +            RL  +D    R+  +   + I  GC
Sbjct: 516 IVGVSAIDRIVEAVEEALKGNVIRLGGKK------RLPSLDLPKIRRNALVEIVPISTGC 569

Query: 187 DKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT 246
              CT+C   + RG   S     +       + +GV +I L  ++  A+   GLD +   
Sbjct: 570 LGSCTYCKTKHARGELGSYPEEAIETRIEASLLDGVKQIWLTSEDSGAY---GLDRQSSL 626

Query: 247 FSDLLYSLSEI-----KGLVRLRYTTSHPRDMSDCLIKAHG--DLDVLMPYLHLPVQSGS 299
            S L   L  +        + LR   S+P  +   L  A        +  +LHLP+QSGS
Sbjct: 627 TSLLARLLRNVFDRRADPSLMLRVGMSNPPFLLQQLKSAVQVFAHPNVFEFLHLPLQSGS 686

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
           + +L +MNR +TA ++  +++ +    P + I++D I GFPGET++D   T+ ++ K  +
Sbjct: 687 NDVLLAMNREYTAEQFEVVVETLLKHFPRMTIATDIICGFPGETEEDHEKTLAIIKKFKF 746

Query: 360 AQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419
                 ++ PR GTP ++M +Q+   +   R   +      +  +  D  +     V   
Sbjct: 747 PVVNISQFYPRPGTPAASM-KQLPSQIVKRRSREVTALF--ESYTCYDWMLHTTQMVWFT 803

Query: 420 KHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYG 465
              ++    VG++     V+    +  +G    + IT V    +  
Sbjct: 804 GTSEKSHHTVGQTKQYVKVLTPRDDALLGTGCPMYITAVDKWHVVA 849



 Score = 89.6 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 39/71 (54%)

Query: 20  QCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEK 79
           Q    Q+ +VK++GC  N  DS  M  +  + GY  V+ M++AD+ ++N+C ++  +   
Sbjct: 267 QPGKQQKIYVKTFGCAHNQSDSEYMMGLLDAAGYTFVSRMEEADVCLINSCTVKSPSEFA 326

Query: 80  VYSFLGRIRNL 90
           +YS +     +
Sbjct: 327 LYSVIQEALQI 337


>gi|260841717|ref|XP_002614057.1| hypothetical protein BRAFLDRAFT_67358 [Branchiostoma floridae]
 gi|229299447|gb|EEN70066.1| hypothetical protein BRAFLDRAFT_67358 [Branchiostoma floridae]
          Length = 316

 Score =  219 bits (559), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 76/294 (25%), Positives = 128/294 (43%), Gaps = 41/294 (13%)

Query: 183 QEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG 242
              C   CT+C   + RG   S    ++V  AR+  + GV EI L  ++  A  GK +  
Sbjct: 30  SNSCLNQCTYCKTKHARGELGSYPPEEIVSRARQSFEEGVVEIWLTSEDTGA-YGKDI-- 86

Query: 243 EKCTFSDLLYSLSEI--------KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP 294
              T  +LL+ L E+         G+    Y   H  +M+  L         +  +LH+P
Sbjct: 87  -GVTLPELLWRLVEVIPEGCMLRVGMTNPPYILEHLEEMAKIL-----SHPRVYAFLHVP 140

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           VQ+ SD +L  M R +   +++Q++D ++   P + I++D I GFP ET +DF  T+ LV
Sbjct: 141 VQAASDSVLMDMRREYCLSDFKQVVDFLKERVPAVTIATDVICGFPTETAEDFEETLQLV 200

Query: 355 DKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQII 414
           ++  +   F  ++ PR GTP + M     + V                        G+I 
Sbjct: 201 EEYKFPSLFINQFFPRPGTPAAKMRRVPPQEV------------------------GEIQ 236

Query: 415 EVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            VL+ +   +K   V  + +   V++      +G ++ V IT      L G L+
Sbjct: 237 NVLVTEESHDKKFYVAHNKYYDQVLVPKDEKLLGKMVTVEITSTGKHYLMGRLL 290


>gi|218262359|ref|ZP_03476856.1| hypothetical protein PRABACTJOHN_02530 [Parabacteroides johnsonii
           DSM 18315]
 gi|218223425|gb|EEC96075.1| hypothetical protein PRABACTJOHN_02530 [Parabacteroides johnsonii
           DSM 18315]
          Length = 200

 Score =  218 bits (555), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 76/198 (38%), Positives = 110/198 (55%), Gaps = 2/198 (1%)

Query: 273 MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAIS 332
           MSD  +    + D +   +HLP QSGS RILK MNR++T   Y   I  IR + PD AIS
Sbjct: 1   MSDETLHVIAEHDNICKMIHLPAQSGSSRILKVMNRKYTREWYLDRIAAIRRILPDCAIS 60

Query: 333 SDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQVDENVKAERL 391
           +D   GF  ET++D+  T+ L+ ++GY  AF FKYS R GT  + ++ + V E  K  RL
Sbjct: 61  TDLFCGFHSETEEDYEETLSLMREVGYDSAFLFKYSERPGTYAAQHLPDTVSEEEKVRRL 120

Query: 392 LCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNSKNHNIGDI 450
             +           N   +G++ EVLIE   K    +L GR+   + V+ + KN+++G  
Sbjct: 121 QGMIDLQNRLSEESNKRDIGKVFEVLIEGFSKRSREQLFGRTSQNKVVIFDKKNYHVGQF 180

Query: 451 IKVRITDVKISTLYGELV 468
           IKVRI     +TL+G+ V
Sbjct: 181 IKVRIHRASSATLFGDPV 198


>gi|222424602|dbj|BAH20256.1| AT4G36390 [Arabidopsis thaliana]
          Length = 310

 Score =  217 bits (554), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 96/288 (33%), Positives = 141/288 (48%), Gaps = 39/288 (13%)

Query: 221 GVCEITLLGQNVNAWRGKGLDGE--------------------KCTFSDLLYSLSEIKGL 260
           GV E+TLLGQNVN++     D E                       F+DLL  LS     
Sbjct: 1   GVKEVTLLGQNVNSYNDDSADRESGANWEYSEGFSSRCKVKNMGLRFADLLDRLSVEFPE 60

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
           +R R+T+ HP+D  D L+    D   +   +HLP QSG+ RIL+ M R +T   Y  ++ 
Sbjct: 61  MRFRFTSPHPKDYPDELLYLMRDRHNICNLIHLPAQSGNSRILEQMRRGYTREAYLDLVK 120

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN-ML 379
           +IRS+ PD+AI+SDFI GF GET+++ + T+ LV  +GY  A+ F YS R  T       
Sbjct: 121 KIRSIIPDVAITSDFITGFCGETEEEHQETLSLVRAVGYDMAYMFAYSMREKTHAHRNYT 180

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE--KGKLVGRSPWLQS 437
           + V E VK  RL  L    RE      D+ VG    VL+E   K   + +L+G++     
Sbjct: 181 DDVPEEVKQRRLTELIDAFRETTGPCYDSQVGSTQLVLVEGPNKRAPETELIGKTDKGHR 240

Query: 438 V------------VLNSKNHN----IGDIIKVRITDVKISTLYGELVV 469
           V            +L+  +      IGD ++V+I     ++L+GE + 
Sbjct: 241 VSFVTKPLFDKACLLDGDDLKRNPGIGDFVEVQIEKSTRASLFGEALA 288


>gi|217031506|ref|ZP_03437011.1| hypothetical protein HPB128_21g64 [Helicobacter pylori B128]
 gi|216946706|gb|EEC25302.1| hypothetical protein HPB128_21g64 [Helicobacter pylori B128]
          Length = 398

 Score =  217 bits (552), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 102/419 (24%), Positives = 189/419 (45%), Gaps = 30/419 (7%)

Query: 44  MEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLV 103
           M +      +       +AD+IV+N+C +   A   V S+  ++  L            V
Sbjct: 1   MGENLKD--FSATLEEQEADIIVINSCTVTNGADSAVRSYAKKMVRLNKE---------V 49

Query: 104 VVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERL 163
           +  GC  + +G+E+  +   +  V G     ++  LL+     K+    D ++E+K    
Sbjct: 50  LFTGCGVKTQGKELFEK-GFLKGVFGHDNKEKINALLQE----KKRFFIDDNLENKHLDT 104

Query: 164 SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVC 223
           ++V     + R   AF+ IQEGCD  C +C++P  RG   S    +++++   L   GV 
Sbjct: 105 TMVSEFVGKTR---AFIKIQEGCDFDCNYCIIPSVRGRARSFEERKILEQVGLLCSKGVQ 161

Query: 224 EITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGD 283
           E+ L G NV +  GK         + L+  LS+I GL R+R  +  P  ++D       +
Sbjct: 162 EVVLTGTNVGS-YGKD---RGSNIARLIKKLSQIAGLKRIRIGSLEPNQINDE-FLELLE 216

Query: 284 LDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGET 343
            D L  +LH+ +Q   D +L+ MNRR+     R+++++I S   + AI +DFIVG PGE+
Sbjct: 217 EDFLEKHLHIALQHSHDFMLERMNRRNRTKSDRELLEKIASK--NFAIGTDFIVGHPGES 274

Query: 344 DDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQV 403
           +  F      ++ +       F YS R  TP S M + V      +RL  ++  +  +  
Sbjct: 275 ESVFEKAFKNLESLPLTHIHPFIYSKRKDTPSSLMRDSVSLEDSKKRLNAIKDLILHKNK 334

Query: 404 SFN--DACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKI 460
           +F      +   ++ L+E   ++ G+      +   + + S        ++++  ++K 
Sbjct: 335 AFRLLQLKLNTPLKALVE--AQKDGEFKALDQFFNPIKIKSDKPLRASFLEIKEYEIKE 391


>gi|68068881|ref|XP_676351.1| hypothetical protein [Plasmodium berghei strain ANKA]
 gi|56496008|emb|CAH98348.1| conserved hypothetical protein [Plasmodium berghei]
          Length = 784

 Score =  216 bits (551), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 86/387 (22%), Positives = 163/387 (42%), Gaps = 19/387 (4%)

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
            +   R   G D+ ++V GCV QA  E  ++    V++V G     ++ + +E    G  
Sbjct: 410 EIIKKRTSSGKDIKIIVCGCVPQA--ENDMKIFENVSLV-GVNNIDKIVDAVENVINGYN 466

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           V     S +     L  +     RK      + I  GC   CT+C   + RG   S ++ 
Sbjct: 467 VKYLKQSKKMTSLNLPKI-----RKNKFIEIININNGCLGNCTYCKTKFARGNLSSYNIK 521

Query: 209 QVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFS-DLLYSLSEIKGLVRLRYT 266
            +V   + +     + EI L  ++  A  G  L+        ++L  + +   ++R+  T
Sbjct: 522 DIVSRIKYVCTKDNIKEIWLTSEDSGA-YGIDLNTNIVNLLKEILDYVQDTDVMIRIGMT 580

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
                      I        +  ++H+PVQSGS+ +LK MNR +   ++  ++D +R   
Sbjct: 581 NPPYILKHVKDICKLLKHKNMYEFIHIPVQSGSNNVLKDMNREYKIEDFIYLVDNLRKYV 640

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           P++ I++D I GFP E+++D   T++L+ K  +      ++ PR GT   NM +++D  +
Sbjct: 641 PNMTIATDIICGFPYESENDHLETVNLIKKYKFPILNISQFYPRRGTVAYNM-KKIDTKI 699

Query: 387 KAERLLCLQKKLREQQVSFNDACV-GQIIEVLIEKHGKEKGKLVGRSPWLQSVVL----N 441
             +R   +           N   +   I +VL  +   +   ++G +     V+L    +
Sbjct: 700 VKKRSREVTDAF--LSYQNNYKFLQNTIQKVLFTEISSKSEHIIGHTKQYVKVLLHNNNS 757

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
              + +G     +I       +  ELV
Sbjct: 758 ENENLLGKFATCKIVSTHKWHVIAELV 784



 Score = 80.0 bits (196), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 39/68 (57%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
            + KS+GC  N  DS  M  +  + G++ V ++DD D+ ++N+C ++  + E + + +  
Sbjct: 222 IYFKSFGCAHNSSDSEFMMGLLSNYGFQFVKNIDDCDICIVNSCTVKNPSEESMKTIIKY 281

Query: 87  IRNLKNSR 94
           + NL  SR
Sbjct: 282 VNNLNKSR 289


>gi|48429440|gb|AAT42488.1| YleA [Escherichia coli B]
          Length = 168

 Score =  215 bits (549), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 66/167 (39%), Positives = 103/167 (61%), Gaps = 1/167 (0%)

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           L  M R HTA EY+ II ++R+ RPDI ISSDFIVGFPGET +DF  TM L+  + +  +
Sbjct: 1   LNLMGRTHTALEYKAIIRKLRAARPDIQISSDFIVGFPGETTEDFEKTMKLIADVNFDMS 60

Query: 363 FSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422
           +SF +S R GTP ++M++ V E  K +RL  LQ+++ +Q ++++   +G    +L+E   
Sbjct: 61  YSFIFSARPGTPAADMVDDVPEEEKKQRLYILQERINQQAMAWSRRMLGTTQRILVEGTS 120

Query: 423 KEK-GKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           ++   +L GR+   + V        IG  + V ITDV  ++L G++V
Sbjct: 121 RKSIMELSGRTENNRVVNFEGTPDMIGKFVDVEITDVYPNSLRGKVV 167


>gi|82915234|ref|XP_729019.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL]
 gi|23485813|gb|EAA20584.1| Drosophila melanogaster GH28477p-related [Plasmodium yoelii yoelii]
          Length = 817

 Score =  214 bits (545), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 86/387 (22%), Positives = 161/387 (41%), Gaps = 19/387 (4%)

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
            +   R   G D+ ++V GCV QA  E  ++    V++V G     ++ + +E    G  
Sbjct: 443 EIIKKRTNSGKDIKIIVCGCVPQA--ENDMKIFENVSLV-GVNNIDKIVDAVENVINGYN 499

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           V     S +     L  +     RK      + I  GC   CT+C   + RG   S ++ 
Sbjct: 500 VKYLKQSKKMTSLNLPKI-----RKNKFIEIININNGCLGNCTYCKTKFARGNLSSYNIK 554

Query: 209 QVVDEARK-LIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS-DLLYSLSEIKGLVRLRYT 266
            +V+  +     + + EI L  ++  A  G  L+        ++L  + +   ++R+  T
Sbjct: 555 DIVNRIKHVYTKDNIKEIWLTSEDSGA-YGIDLNTNIVNLLKEILEYVQDTDVMIRIGMT 613

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
                      I        +  ++H+PVQSGS+ +LK MNR +   ++  ++D +R   
Sbjct: 614 NPPYILKHVKDICKLLKHKNMYEFIHIPVQSGSNNVLKDMNREYKIEDFIYLVDNLRKYV 673

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           P++ I++D I GFP E+++D   T++L+ K  +      ++ PR GT   NM +++D  +
Sbjct: 674 PNMTIATDIICGFPYESENDHLETVNLIKKYKFPILNISQFYPRRGTVAYNM-KKIDTKI 732

Query: 387 KAERLLCLQKKLREQQVSFNDACV-GQIIEVLIEKHGKEKGKLVGRSPWLQSV----VLN 441
             +R   +           N   +   I  VL  +   +   ++G +     V      N
Sbjct: 733 VKKRSREVTDAF--LSYQNNYKFLQDTIQNVLFTEISSKSEHIIGHTKQYVKVLLHNNNN 790

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
              + +G     +I       +  ELV
Sbjct: 791 ENENLLGKFATCKIVSTHKWHVIAELV 817



 Score = 76.9 bits (188), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 35/61 (57%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
            + KS+GC  N  DS  M  +  + G++ V +++D D+ ++N+C ++  + E + + +  
Sbjct: 253 IYFKSFGCAHNSSDSEFMMGLLSNYGFKFVKNIEDCDICIVNSCTVKNPSEESMKTIINY 312

Query: 87  I 87
           +
Sbjct: 313 V 313


>gi|301779277|ref|XP_002925056.1| PREDICTED: CDK5 regulatory subunit-associated protein 1-like
           1-like, partial [Ailuropoda melanoleuca]
          Length = 429

 Score =  213 bits (542), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 86/347 (24%), Positives = 158/347 (45%), Gaps = 22/347 (6%)

Query: 15  SQIVDQCIVP-QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIR 73
           S   D  I   Q+ +++++GC  N  D   M     + GYE   +  DADL +LN+C ++
Sbjct: 52  SPPSDSTIPGIQKIWMRTWGCSHNNSDGEYMAGQLAAYGYEITENASDADLWLLNSCTVK 111

Query: 74  EKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTY 133
             A +   + + + +              +V+AGCV QA+  +   +      ++G Q  
Sbjct: 112 NPAEDHFRNSIKKAQEENKK---------IVLAGCVPQAQPRQDYLKG---LSIIGVQQI 159

Query: 134 YRLPELLERARFGKRVVDTDYSVED-KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTF 192
            R+ E++E    G  V        + K    + +D    RK  +   ++I  GC   CT+
Sbjct: 160 DRVVEVVEETIKGHSVRLLGQKKNNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTY 219

Query: 193 CVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLY 252
           C   + RG   S  + ++V+ A++    GVCEI L  ++  A  G+ +     +   LL+
Sbjct: 220 CKTKHARGNLASYPIDELVERAKQSFQEGVCEIWLTSEDTGA-YGRDI---GTSLPALLW 275

Query: 253 SLSE-IKGLVRLRYTTSHPRDMSDCL--IKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
            L E I     LR   ++P  +S+ L  +    +   +  +LH+PVQS SD +L  M R 
Sbjct: 276 KLVEVIPEGAMLRLGMTNPPYISEHLEEMAKILNHPRVYAFLHIPVQSASDTVLMEMKRE 335

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
           +   ++++++D ++  + +   +S    G PG     F  T  +V++
Sbjct: 336 YCVADFKRVVDFLKENQTEGNPNSQV-RGVPGSLLTMFWKTQSVVEE 381


>gi|221057894|ref|XP_002261455.1| hypothetical protein, conserved [Plasmodium knowlesi strain H]
 gi|194247460|emb|CAQ40860.1| hypothetical protein, conserved [Plasmodium knowlesi strain H]
          Length = 750

 Score =  212 bits (541), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 88/378 (23%), Positives = 164/378 (43%), Gaps = 19/378 (5%)

Query: 97  EGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSV 156
             GD+ ++V GCV QA  E+ +     V++V G     ++ +++E    G  V    +S 
Sbjct: 384 PRGDIKIIVCGCVPQA--EKDMEIFENVSLV-GVTNIDKIVDVVENVINGYNVRYLKHSK 440

Query: 157 EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARK 216
           +     L  +     RK      + I  GC   CT+C   + RG   S ++  +++  + 
Sbjct: 441 KMTSLNLPKI-----RKNKYIEIININNGCLGNCTYCKTKFARGDLASYNIPDIINRIKH 495

Query: 217 -LIDNGVCEITLLGQNVNAWRGKGLDGEK-CTFSDLLYSLSEIKGLVRLRYTTSHPRDMS 274
              +  + EI L  ++  A  G  L+        ++L ++S    ++RL  T        
Sbjct: 496 VCNEENIKEIWLTSEDTGA-YGIDLNTNIVKLLKEILDTISNSDVMIRLGMTNPPYILKH 554

Query: 275 DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSD 334
              I        +  ++H+PVQSGS+R+LK+MNR +   ++  +++ +R   P+I I++D
Sbjct: 555 IKDICNLLKHKNMYEFIHIPVQSGSNRVLKNMNREYEIEDFIYLVENLRKDVPNITIATD 614

Query: 335 FIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCL 394
            I GFP E + D   T+DLV K  +      ++ PR GT    M ++++  +  +R   +
Sbjct: 615 IICGFPYEMEKDHLETVDLVKKYQFPILNISQFYPRRGTVAYGM-KKINTKIVKKRSREV 673

Query: 395 QKKLREQQVSFNDACV-GQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN----HNIGD 449
                    + N   + G    VL  +   +   L+G +     V+L ++N    H +  
Sbjct: 674 TDAF--LSYTNNYKFLEGTTQRVLFTEVSTKSDDLIGHTKQYVKVLLQNRNNENSHLLSH 731

Query: 450 IIKVRITDVKISTLYGEL 467
               +I       +  EL
Sbjct: 732 FANCKIVSAHKWHVVAEL 749



 Score = 80.8 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 37/67 (55%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + + KS+GC  N  DS  M  +  + G++ V S+++ D+ ++N+C ++  + E + + + 
Sbjct: 213 KIYFKSFGCAHNSSDSEFMMGLLGNYGFQFVKSVEECDICIINSCTVKNPSEESMKTIIN 272

Query: 86  RIRNLKN 92
            +  L  
Sbjct: 273 YVHKLNK 279


>gi|312892376|ref|ZP_07751871.1| Protein of unknown function UPF0004 [Mucilaginibacter paludis DSM
           18603]
 gi|311295160|gb|EFQ72334.1| Protein of unknown function UPF0004 [Mucilaginibacter paludis DSM
           18603]
          Length = 301

 Score =  212 bits (541), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 83/233 (35%), Positives = 131/233 (56%), Gaps = 8/233 (3%)

Query: 9   GVAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLN 68
           G A M+ Q  ++    ++ +++SYGC MN  DS  +  +   QG+E     ++AD+I +N
Sbjct: 17  GEALMLEQRPEKNN-GRKLYIESYGCAMNFSDSEIVASILLDQGFETTTDFNNADVIFIN 75

Query: 69  TCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVV 128
           TC IRE A ++V + L   +  K    K    ++V V GC+A+    + L    +V+VVV
Sbjct: 76  TCSIRENAEQRVRNRLKEFKVAK----KRNPGMVVGVLGCMAERLKSKFLEEEKLVDVVV 131

Query: 129 GPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
           GP  Y  LP L+++   G+R V+   S E+ +  ++ V        G+ AF++I  GCD 
Sbjct: 132 GPDAYRDLPNLIDQVDSGQRAVNVLLSREETYADINPVRLN---SNGINAFVSIMRGCDN 188

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD 241
            C+FCVVP+TRG E SR    +V E   L + G  E+TLLGQNV++++ + L 
Sbjct: 189 MCSFCVVPFTRGRERSRDAISIVKECTDLFNQGYREVTLLGQNVDSYKWEPLP 241


>gi|196019608|ref|XP_002119009.1| hypothetical protein TRIADDRAFT_62979 [Trichoplax adhaerens]
 gi|190577345|gb|EDV18505.1| hypothetical protein TRIADDRAFT_62979 [Trichoplax adhaerens]
          Length = 267

 Score =  212 bits (541), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 71/248 (28%), Positives = 115/248 (46%), Gaps = 8/248 (3%)

Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLL 251
           FC++PY RG   S  + +++  A+ L+D G  E+ L G ++    G  L G+    + + 
Sbjct: 9   FCIIPYGRGNSRSVPVGEIIKYAQNLVDKGYKELVLTGVDIT-DYGLDLPGKPSLGNMIN 67

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
                +  + RLR ++    ++ D L          MP+LHL +Q+G D ILK M RRH 
Sbjct: 68  RLFKMVPDIKRLRLSSIDVAEIDDELFDIIIHEPKFMPHLHLSLQAGDDMILKRMKRRHR 127

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
             +     + I   RP I + +D I GFP ETD+ F  T DL++++       F YSPR 
Sbjct: 128 RQQVIDFCNEIWKYRPQIVLGADVIAGFPTETDEMFNNTYDLIEQLKIVHLHVFPYSPRD 187

Query: 372 GTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR 431
            TP + M  QV   V  +R   L+   ++    + +  +G+   +L E +        G 
Sbjct: 188 NTPAARMP-QVKSEVIKDRAKKLRDLKQKLIYQYLEDKIGKEEVILAESNN------YGY 240

Query: 432 SPWLQSVV 439
           +     V 
Sbjct: 241 TEDYFKVY 248


>gi|156101079|ref|XP_001616233.1| tRNA modifying enzyme [Plasmodium vivax SaI-1]
 gi|148805107|gb|EDL46506.1| tRNA modifying enzyme, putative [Plasmodium vivax]
          Length = 799

 Score =  212 bits (541), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 90/405 (22%), Positives = 175/405 (43%), Gaps = 20/405 (4%)

Query: 71  HIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGP 130
            ++E   E     +    N  +++   G D+ ++V GCV QA  E+ +     V++V G 
Sbjct: 408 AVKEAIGEAAKGAITEEVNGASAKPPRG-DIKIIVCGCVPQA--EKDMEIFENVSLV-GV 463

Query: 131 QTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190
               ++ +++E    G  V         + ++++ ++    RK      + I  GC   C
Sbjct: 464 TNIDKIVDVVENVINGYNV-----RYLKQAKKMTSLNLPKIRKNKYIEIININNGCLGNC 518

Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLI-DNGVCEITLLGQNVNAWRGKGLDGEK-CTFS 248
           T+C   + RG   S ++  +++  + +  +  + EI L  ++  A  G  L+        
Sbjct: 519 TYCKTKFARGDLASYNIPDIINRIKHVCSEENIKEIWLTSEDTGA-YGIDLNTNIVKLLK 577

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
           ++L ++S    ++RL  T           I        +  ++H+PVQSGS+R+LK+MNR
Sbjct: 578 EILDTISNSDVMIRLGMTNPPYILKHVKDICNLLKHKNMYEFIHIPVQSGSNRVLKNMNR 637

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
            +   ++  +++ +R   P+I I++D I GFP E + D   T+DLV K  +      ++ 
Sbjct: 638 EYEIEDFIYLVENLRKDVPNITIATDIICGFPYEMEKDHVETVDLVKKYQFPILNISQFY 697

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACV-GQIIEVLIEKHGKEKGK 427
           PR GT    M ++++  +  +R   +         + N   + G    VL  +   +   
Sbjct: 698 PRRGTVAYGM-KKINTKIVKKRSREVTDAF--LSYTNNYKFLEGTTQRVLFTEVSTKSED 754

Query: 428 LVGRSPWLQSVVL----NSKNHNIGDIIKVRITDVKISTLYGELV 468
           L+G +     V+L    N   H +      +I       +  ELV
Sbjct: 755 LIGHTKQYVKVLLQNRNNENAHLLSHFANCKIVSAHKWHVVAELV 799



 Score = 83.1 bits (204), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 39/72 (54%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + + KS+GC  N  DS  M  +  + G++ V S+++ D+ ++N+C ++  + E + + + 
Sbjct: 257 KIYFKSFGCAHNSSDSEFMMGLLGNYGFQFVKSVEECDICIINSCTVKNPSEESMKTIIN 316

Query: 86  RIRNLKNSRIKE 97
            +  L  +  + 
Sbjct: 317 YVNKLNKANRRR 328


>gi|68249225|ref|YP_248337.1| 2-methylthioadenine synthetase [Haemophilus influenzae 86-028NP]
 gi|68057424|gb|AAX87677.1| predicted 2-methylthioadenine synthetase [Haemophilus influenzae
           86-028NP]
          Length = 218

 Score =  212 bits (540), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 67/216 (31%), Positives = 114/216 (52%), Gaps = 9/216 (4%)

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
           ++   VRL Y   +P       + A G    L+PYL +P+Q  S +ILK+M R  +    
Sbjct: 4   KLGIWVRLHYVYPYPHVDDLIPLMADGT---LLPYLDIPLQHASPKILKAMKRPGSIDRT 60

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
            + I + R + PD+ + S FIVGFPGET++DF+  +D + +    +   FK+SP  G P 
Sbjct: 61  LERIKQWREICPDLTLRSTFIVGFPGETEEDFQLLLDFLKEAQLDRVGCFKFSPVEGAPA 120

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSP 433
           ++M +QV E+VK ER     +  +E   +     +G+ ++VL+++  ++   G+    +P
Sbjct: 121 TDMADQVPEDVKEERFHRFMQLQQEISANRLKQKIGKTLDVLVDEIDEDGIIGRSKADAP 180

Query: 434 WLQSVVLNSK----NHNIGDIIKVRITDVKISTLYG 465
            +  +V        N  +GD+IKV IT+     L+G
Sbjct: 181 EVDGLVYVDNLSGINVKVGDVIKVTITNSDEYDLWG 216


>gi|148827825|ref|YP_001292578.1| 2-methylthioadenine synthetase [Haemophilus influenzae PittGG]
 gi|148719067|gb|ABR00195.1| predicted 2-methylthioadenine synthetase [Haemophilus influenzae
           PittGG]
          Length = 218

 Score =  212 bits (539), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 67/216 (31%), Positives = 113/216 (52%), Gaps = 9/216 (4%)

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
           ++   VRL Y   +P       + A G    L+PYL +P+Q  S +ILK+M R  +    
Sbjct: 4   KLGIWVRLHYVYPYPHVDDLIPLMADGT---LLPYLDIPLQHASPKILKAMKRPGSIDRT 60

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
            + I + R + PD+ + S FIVGFPGET++DF+  +D + +    +   FK+SP  G P 
Sbjct: 61  LERIKQWREICPDLTLRSTFIVGFPGETEEDFQLLLDFLKEAQLDRVGCFKFSPVEGAPA 120

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSP 433
           + M +QV E+VK ER     +  +E   +     +G+ ++VL+++  ++   G+    +P
Sbjct: 121 TEMADQVPEDVKEERFHRFMQLQQEISANRLKQKIGKTLDVLVDEIDEDGIIGRSKADAP 180

Query: 434 WLQSVVLNSK----NHNIGDIIKVRITDVKISTLYG 465
            +  +V        N  +GD+IKV IT+     L+G
Sbjct: 181 EVDGLVYVDNLSGINVKVGDVIKVTITNSDEYDLWG 216


>gi|163784661|ref|ZP_02179488.1| hypothetical protein HG1285_10340 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880071|gb|EDP73748.1| hypothetical protein HG1285_10340 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 197

 Score =  212 bits (539), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 75/202 (37%), Positives = 126/202 (62%), Gaps = 6/202 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++++++++GCQMN+ DS +M  +  + GYE   S ++AD+I++NTC +REK  +KV S L
Sbjct: 2   KKYYIRTFGCQMNINDSQKMAGILKTLGYEPAESWEEADVILVNTCSVREKPDQKVLSAL 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           G  + +KN       D ++ V GC+AQ  G EIL+++P +++V G    + LP+LLE A+
Sbjct: 62  GEFKKVKNK----NPDAVIGVCGCLAQRAGYEILQKAPFIDMVFGTTNIHHLPQLLEEAQ 117

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G + V+    +++   +L        R    TA++TI  GCDK CT+C+VP TRG E S
Sbjct: 118 QGNKAVEIIEDIDENETQLDSYP--TVRDNKYTAYVTIIRGCDKKCTYCIVPATRGKERS 175

Query: 205 RSLSQVVDEARKLIDNGVCEIT 226
           R + +++ E + L+++GV   T
Sbjct: 176 RRIGEILQEVQYLVEDGVKRYT 197


>gi|288926974|ref|ZP_06420870.1| 2-methylthioadenine synthetase [Prevotella buccae D17]
 gi|288336257|gb|EFC74642.1| 2-methylthioadenine synthetase [Prevotella buccae D17]
          Length = 275

 Score =  211 bits (538), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 73/291 (25%), Positives = 127/291 (43%), Gaps = 25/291 (8%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEKVYSFLGR 86
           + + GC  N+ DS  +   F + GY  V+       ++ V+NTC   E A ++  + +  
Sbjct: 8   IITMGCSKNLVDSEVLMKQFEANGYRCVHDAAHPQGEIAVINTCGFIETAKQESINTILE 67

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
               K      G    + V GC++Q   +E+    P V+   G   Y +L   L +A   
Sbjct: 68  FVQAKTE----GRLNKLYVMGCLSQRYKDELEAEIPEVDKFYGKFNYKQLLADLGKA--- 120

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
                         E  S     +       A+L I EGCD+ C +C +P   G  +SR 
Sbjct: 121 --------------ELPSCNGRRHLTTPRHYAYLKIAEGCDRHCAYCAIPLMTGRHVSRP 166

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
           + +++DE R+L+  GV E  ++ Q +  + G  LDG     ++L+  +++I G+  +R  
Sbjct: 167 MDEILDEVRELVAGGVKEFQVIAQELT-YYGIDLDGH-HHIAELISRMADIPGVKWIRLH 224

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
            ++P      L+    +   +  YL + +Q  SD IL  M+R  T  E  +
Sbjct: 225 YAYPNQFPMDLLDVMRERPNVCRYLDIALQHISDHILSRMHRHVTKQETVE 275


>gi|218262360|ref|ZP_03476857.1| hypothetical protein PRABACTJOHN_02531 [Parabacteroides johnsonii
           DSM 18315]
 gi|218223426|gb|EEC96076.1| hypothetical protein PRABACTJOHN_02531 [Parabacteroides johnsonii
           DSM 18315]
          Length = 244

 Score =  211 bits (537), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 74/211 (35%), Positives = 126/211 (59%), Gaps = 8/211 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F+++YGCQMNV DS  +  +    GY   + ++DAD I +NTC +R+ A +K+Y  L
Sbjct: 19  KKLFIETYGCQMNVADSEVVASIMKMDGYAVTDKIEDADAIFVNTCSVRDNAEQKIYGRL 78

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
              ++LK         L++ V GC+A+   EE++      ++VVGP +Y  LP L+    
Sbjct: 79  QYFQSLKRK----KKTLVIGVLGCMAERVKEELIEVH-HADLVVGPDSYMDLPNLVGAVE 133

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G++ ++ + S ++ ++ +  +  G     G   F++I  GC+ FCT+C+VPYTRG E S
Sbjct: 134 HGEKAINVELSTQETYKDVIPLKLGGVHISG---FVSIMRGCNNFCTYCIVPYTRGRERS 190

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAW 235
           R +  +++E R + + G  E+TLLGQNVN++
Sbjct: 191 RDIESILNEIRDMREKGFKEVTLLGQNVNSY 221


>gi|229845637|ref|ZP_04465762.1| predicted 2-methylthioadenine synthetase [Haemophilus influenzae
           6P18H1]
 gi|229811437|gb|EEP47141.1| predicted 2-methylthioadenine synthetase [Haemophilus influenzae
           6P18H1]
          Length = 243

 Score =  210 bits (534), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 66/229 (28%), Positives = 115/229 (50%), Gaps = 9/229 (3%)

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
               +    +   ++   VRL Y   +P       + A G    L+PYL +P+Q  S +I
Sbjct: 16  NPKHWLCKPWLPKKLGIWVRLHYVYPYPHVDDLIPLMADGT---LLPYLDIPLQHASPKI 72

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           LK+M R  +     + I + R + PD+ + S FIVGFPGET++DF+  +D + +    + 
Sbjct: 73  LKAMKRPGSIDRTLERIKQWREICPDLTLRSTFIVGFPGETEEDFQLLLDFLKEAQLDRV 132

Query: 363 FSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422
             FK+SP  G   ++M +QV E+VK ER     +  +E   +     +G+ ++VL+++  
Sbjct: 133 GCFKFSPVEGAHATDMADQVPEDVKEERFHRFMQLQQEISANRLKQKIGKTLDVLVDEID 192

Query: 423 KEK--GKLVGRSPWLQSVVLNSK----NHNIGDIIKVRITDVKISTLYG 465
           ++   G+    +P +  +V        N  +GD+IKV IT+     L+G
Sbjct: 193 EDGIIGRSKADAPEVDGLVYVDNLSGINVKVGDVIKVTITNSDEYDLWG 241


>gi|332296138|ref|YP_004438061.1| RNA modification enzyme, MiaB family [Thermodesulfobium narugense
           DSM 14796]
 gi|332179241|gb|AEE14930.1| RNA modification enzyme, MiaB family [Thermodesulfobium narugense
           DSM 14796]
          Length = 398

 Score =  209 bits (532), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 96/427 (22%), Positives = 174/427 (40%), Gaps = 47/427 (11%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           I+ ++ F  + GC+++  D  + +++FF   Y    S   +D+I+L++C + E A ++  
Sbjct: 2   ILNKKVFSLALGCKVSQADLAKFKELFFPN-YTEEVSASLSDVIILSSCAVTENAQKESI 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             L +   L            +   GC A    E + +  P V      +          
Sbjct: 61  RILKKFSKLNKQ---------IYFLGC-AVTAYENLKKLFPQVIFFNNKE---------- 100

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
                         +E+      I+   + RKR     L + +GC + CT+C++ Y RG 
Sbjct: 101 --------------LEELLSNKVIISNYHGRKR---YILKVGDGCCRECTYCIIRYLRGP 143

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
             SR    +  E   L    V EI L    +  W              ++  L      +
Sbjct: 144 LRSRPFEDIKKEILML--RNVDEIVLSAIELALWGHDFGLNIVWLLDQIVRLLDNNNTKI 201

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           RL         ++   +    + + + P+LHL +QS S  +LKSM R     +    I  
Sbjct: 202 RLGSIYPALL-LNKEFVNFIANSNKIQPHLHLSLQSASPDVLKSMKRFTNVDKVLDKIFE 260

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           IR  R +  +S+D IVG+P E+D DF+ T+D +DK+   +  SF +S R GT    +   
Sbjct: 261 IRDKRDNFLVSTDIIVGYPTESDRDFQMTIDFLDKLPLVRVHSFPFSARKGTVAFQLKP- 319

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQI-IEVLIEKHGKEKGKLVGRSPWLQSVVL 440
           +D+ +  ER   + ++  + +    +  +G+     L E+  +++  + G S     +  
Sbjct: 320 LDKKIILERQKKVTERFSQSR--ILEKFIGKEIFSPLWER--EDENYIYGHSSNYIPIKA 375

Query: 441 NSKNHNI 447
           N  N  I
Sbjct: 376 NKSNLGI 382


>gi|119596724|gb|EAW76318.1| CDK5 regulatory subunit associated protein 1, isoform CRA_a [Homo
           sapiens]
          Length = 291

 Score =  208 bits (529), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 66/201 (32%), Positives = 121/201 (60%), Gaps = 4/201 (1%)

Query: 17  IVDQCI-VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREK 75
           ++D+ +   ++ ++++YGCQMNV D+     +    GY R +++ +AD+I+L TC IREK
Sbjct: 91  MMDELLGRQRKVYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCSIREK 150

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135
           A + +++ L +++ LK  R +    L + + GC+A+   EEIL R  +V+++ GP  Y  
Sbjct: 151 AEQTIWNRLHQLKALKTRRPRSRVPLRIGILGCMAERLKEEILNREKMVDILAGPDAYRD 210

Query: 136 LPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
           LP LL  A  G++  +   S+++ +  +  V          +AF++I  GCD  C++C+V
Sbjct: 211 LPRLLAVAESGQQAANVLLSLDETYADVMPVQTS---ASATSAFVSIMRGCDNMCSYCIV 267

Query: 196 PYTRGIEISRSLSQVVDEARK 216
           P+TRG E SR ++ +++E +K
Sbjct: 268 PFTRGRERSRPIASILEEVKK 288


>gi|330902503|gb|EGH33524.1| ribosomal protein S12 methylthiotransferase [Pseudomonas syringae
           pv. japonica str. M301072PT]
          Length = 262

 Score =  207 bits (527), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 76/258 (29%), Positives = 124/258 (48%), Gaps = 14/258 (5%)

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTF 247
           P  RG  +SR +  V+DEA++L+ +GV E+ ++ Q+ +A+      R    DG+  K   
Sbjct: 1   PSMRGKLVSRPVGDVLDEAKRLVKSGVKELLVISQDTSAYGVDVKYRTGFWDGQPVKTRM 60

Query: 248 SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307
           ++L  +L  +   VRL Y   +P       + A G    ++PYL +P Q  S +ILK M 
Sbjct: 61  TELCQALGSMGVWVRLHYVYPYPHVDELIPLMAAG---KILPYLDIPFQHASPKILKLMK 117

Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           R     +    I   R   PD+ I S FIVGFPGET++DF+  +D + +    +   F+Y
Sbjct: 118 RPAFEDKTLARIKNWREQCPDLIIRSTFIVGFPGETEEDFQYLLDWLTEAQLDRVGCFQY 177

Query: 368 SPRLGTPGSNMLEQ-VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK- 425
           SP  G P + +    V ++VK +R        +    +     +G+ IEVLI++      
Sbjct: 178 SPVEGAPANLLDAAIVPDDVKQDRWDRFMAHQQAISAARLQMKIGKEIEVLIDEVDDRGA 237

Query: 426 -GKLVGRSPWLQSVVLNS 442
            G+    +P +   V   
Sbjct: 238 VGRCFFDAPEIDGSVFIG 255


>gi|291534091|emb|CBL07204.1| 2-methylthioadenine synthetase [Megamonas hypermegale ART12/1]
          Length = 169

 Score =  207 bits (527), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 59/167 (35%), Positives = 100/167 (59%), Gaps = 1/167 (0%)

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
           +LK+MNR +T   Y++++ +IR+  P+ + ++D IVGFPGETD+DF   ++ + +I Y  
Sbjct: 1   MLKAMNRGYTTAYYKELVAKIRNQFPEASFTTDLIVGFPGETDEDFAQMLEFLKEIRYDA 60

Query: 362 AFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKH 421
           A++F YS R GTP + M  QV + +K ERL  L     E  +  N + + + +EV++E  
Sbjct: 61  AYTFLYSKRSGTPAATMENQVPQELKKERLHKLMDAQNEISLEINQSLLNKTVEVMVEGP 120

Query: 422 GK-EKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
            K +     G +   + ++ + K+  IGD++KV+IT  +   L GEL
Sbjct: 121 SKTDPNVYTGHTRTNKIILWDHKDEQIGDLVKVKITHPQTWVLKGEL 167


>gi|213029627|ref|ZP_03344074.1| hypothetical protein Salmonelentericaenterica_48731 [Salmonella
           enterica subsp. enterica serovar Typhi str. 404ty]
          Length = 249

 Score =  207 bits (526), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 76/238 (31%), Positives = 120/238 (50%), Gaps = 15/238 (6%)

Query: 147 KRVVDTDYSVEDKFERLS----IVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           ++V+   +    K +       + + G        A+L I EGC+  CTFC++P  RG  
Sbjct: 13  EQVLQHVHHYVPKPKHNPFLSLVPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGDL 72

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNA------WRGKGLDGE--KCTFSDLLYSL 254
           +SR +  V+ EA++L+D GV EI ++ Q+ +A       R    +GE  K +   L   L
Sbjct: 73  VSRPIGDVLSEAKRLVDAGVKEILVISQDTSAYGVDVKHRTGFHNGEPMKTSMVSLCEQL 132

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
           S++    RL Y   +P       + A G    ++PYL +P+Q  S RILK M R  +   
Sbjct: 133 SKLGVWTRLHYVYPYPHVDDVIPLMAEG---KILPYLDIPLQHASPRILKLMKRPGSVDR 189

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
               I + R + P++ + S FIVGFPGET++DF+  +D + +    +   FKYSP  G
Sbjct: 190 QLARIKQWREICPELTLRSTFIVGFPGETEEDFQMLLDFLKEARLDRVGCFKYSPVEG 247


>gi|254448855|ref|ZP_05062311.1| 2-methylthioadenine synthetase [gamma proteobacterium HTCC5015]
 gi|198261545|gb|EDY85834.1| 2-methylthioadenine synthetase [gamma proteobacterium HTCC5015]
          Length = 277

 Score =  206 bits (525), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 75/295 (25%), Positives = 127/295 (43%), Gaps = 30/295 (10%)

Query: 14  VSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIR 73
           ++++        +    S GC  N  DS R+     S+GY+       A+L+++NTC   
Sbjct: 1   MTELTTPVKSASKVGFISLGCPKNTVDSERILTQLRSEGYQISPDYQGAELVIVNTCGFI 60

Query: 74  EKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTY 133
           + A ++    +G                 V+V GC+  A   +I    P V  V GP  Y
Sbjct: 61  DAAKKESLDTIGEALQENGK---------VIVTGCMG-ATESDITEVHPGVLSVSGPHQY 110

Query: 134 YRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC 193
             + + +         V       D F  L +   G        A+L I EGCD  C+FC
Sbjct: 111 EAVIKSVHEH------VTPPPQSHDPFIDL-VPPQGIKLTPKHYAYLKISEGCDHTCSFC 163

Query: 194 VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE---------K 244
           ++P  RG  +SR + +V+DEA++L ++GV E+ ++ Q+ +A  G  +  +         K
Sbjct: 164 IIPSMRGKLVSRPIGEVLDEAKRLAESGVKELLIISQDTSA-YGSDVGYKLDFWNGRPIK 222

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
               +L  +L E+   VRL Y   +P       + A G    ++PYL +P  + +
Sbjct: 223 TRLKELCEALGELGVWVRLHYVYPYPSVDDIIPLMAEG---KILPYLDIPFHTPT 274


>gi|261323191|ref|ZP_05962388.1| conserved hypothetical protein [Brucella neotomae 5K33]
 gi|261299171|gb|EEY02668.1| conserved hypothetical protein [Brucella neotomae 5K33]
          Length = 350

 Score =  205 bits (523), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 87/304 (28%), Positives = 132/304 (43%), Gaps = 33/304 (10%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R    S GC   + DS R+     S+GYE     D ADL+++NTC   + A ++    +G
Sbjct: 5   RVSFVSLGCPKALVDSERIITGLRSEGYEISRKHDGADLVIVNTCGFLDSARDESLEAIG 64

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                         +  V+V GC+  AE + I  R P V  + GPQ Y  +   +     
Sbjct: 65  LA---------LNENGKVIVTGCLG-AEPDVIRERHPNVLAITGPQAYESVMNAVHEVAP 114

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                       D F  L +   G        A+L I EGC   C+FC++P  RG  +SR
Sbjct: 115 ---------PAHDPFVDL-VPPQGVKLTPRHYAYLKISEGCSNRCSFCIIPALRGDLVSR 164

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE---------KCTFSDLLYSLSE 256
            +++V+ EA KL+  GV EI ++ Q+ +A  G  +  +         +  F DL   L E
Sbjct: 165 PINEVLREAEKLVQAGVKEILVISQDTSA-YGLDIKYQEAMWQDRTVRTKFLDLSRELGE 223

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           +   VR+ Y   +PR      + A G    ++PYL +P Q  S  +LK+M R     + R
Sbjct: 224 MGVWVRMHYVYPYPRVDEVIPLMAEG---KILPYLDIPFQHASPAVLKNMRRPAHQEKPR 280

Query: 317 QIID 320
               
Sbjct: 281 AAFR 284


>gi|210635803|ref|ZP_03298621.1| hypothetical protein COLSTE_02560 [Collinsella stercoris DSM 13279]
 gi|210158308|gb|EEA89279.1| hypothetical protein COLSTE_02560 [Collinsella stercoris DSM 13279]
          Length = 238

 Score =  205 bits (521), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 71/208 (34%), Positives = 116/208 (55%), Gaps = 1/208 (0%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
           + +Q+GC+  C++C+V   RG E S  +  V+D+ R+    G+ E+ L G N+ A+ G  
Sbjct: 30  IKVQDGCNNRCSYCIVWKARGPERSVPVEAVLDQVREAERAGIPEVVLTGVNLGAYDGVD 89

Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAH-GDLDVLMPYLHLPVQSG 298
                    +LL  +     + ++R ++  P D+ + LI A       + P+LHLP+QSG
Sbjct: 90  ARDAHVEIDELLNIILRETDIPQVRLSSLEPMDVDERLIDAMVAGGPRVAPFLHLPLQSG 149

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
               L+ MNR +TA +Y   +  IR+  P  +IS D I GFPGETDD+F  ++ L +++G
Sbjct: 150 CSATLERMNRPYTAEQYEATVAMIRAKLPAASISCDIIAGFPGETDDEFAQSLALCERVG 209

Query: 359 YAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           +++   F+YS R GTP +   +QV   V
Sbjct: 210 FSRMHVFRYSARPGTPAAEAADQVPPEV 237


>gi|74146734|dbj|BAE41351.1| unnamed protein product [Mus musculus]
          Length = 351

 Score =  204 bits (520), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 72/313 (23%), Positives = 139/313 (44%), Gaps = 16/313 (5%)

Query: 16  QIVDQCIVP--QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIR 73
           +      +P  Q+ +++++GC  N  D   M     + GY+   +  DADL +LN+C ++
Sbjct: 52  RPPSDSTIPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVK 111

Query: 74  EKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTY 133
             A +   + + + +              VV+AGCV QA+  +   +      ++G Q  
Sbjct: 112 NPAEDHFRNSIKKAQEENKK---------VVLAGCVPQAQPRQDYLKG---LSIIGVQQI 159

Query: 134 YRLPELLERARFGKRVVDTDYSVED-KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTF 192
            R+ E++E    G  V       ++ K    + +D    RK  +   ++I  GC   CT+
Sbjct: 160 DRVVEVVEETIKGHSVRLLGQKKDNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTY 219

Query: 193 CVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLY 252
           C   + RG   S  + ++V+ A++    GVCEI L  ++  A  G+ +  +  T    L 
Sbjct: 220 CKTKHARGNLASYPIDELVERAKQSFQEGVCEIWLTSEDTGA-YGRDIGTDLPTLLWKLV 278

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
            +     ++RL  T           +    +   +  +LH+PVQS SD +L  M R +  
Sbjct: 279 EVIPEGAMLRLGMTNPPYILEHLEEMAKILNHPRVYAFLHIPVQSASDSVLMDMKREYCV 338

Query: 313 YEYRQIIDRIRSV 325
            ++++++D ++  
Sbjct: 339 ADFKRVVDFLKEK 351


>gi|257459328|ref|ZP_05624441.1| 2-methylthioadenine synthetase [Campylobacter gracilis RM3268]
 gi|257443257|gb|EEV18387.1| 2-methylthioadenine synthetase [Campylobacter gracilis RM3268]
          Length = 511

 Score =  204 bits (519), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 92/524 (17%), Positives = 182/524 (34%), Gaps = 99/524 (18%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +  + S GC  N+ DS  M     +  YE  +    AD++++NTC     A ++    + 
Sbjct: 3   KLHLVSLGCNKNLVDSEIMLGRLQN--YELTDEPASADVMIVNTCGFIASAKQESIRAIL 60

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           ++   K S        L+VV GC+ Q   +E++R  P V++  G   Y ++ E++ + + 
Sbjct: 61  KLSEQKKS------GALLVVTGCLMQRYKDELMRELPEVDIFSGVGDYDKIDEMILKKQN 114

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                   +S +   +  ++            A++ I EGC++ C+FC +P  +G   SR
Sbjct: 115 -------LFSPQTYLQSPALTSSRVITGSNYHAYVKISEGCNQKCSFCAIPSFKGRLKSR 167

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL-----DGEKCTFSDLLYSLSEIKGL 260
           S+  +  E R L+  G  + + + Q+ ++  G+ L     DG     S+   + + ++  
Sbjct: 168 SIDDIEAEVRGLVARGFYDFSFIAQD-SSSYGRDLRRSKKDGANFNGSEDELNFAGLRDG 226

Query: 261 VRLRYTTSHPRDMSD--CLIKAHGDLDVLMPYLHLPVQSGS---------DRILKSMNRR 309
                +       S              L+       +S           D  L ++ +R
Sbjct: 227 ENFNASCCEQNPNSSNGDAADGISAQSRLVCDKDSGGESADADDERVHEQDIDLVALIKR 286

Query: 310 ---------------HTAYEYRQIIDRIRSVRPDIAISSDFIV----------GFPGETD 344
                          +      ++I  I S  P  A   D  +             G   
Sbjct: 287 IEKIKGVKVARVLYLYPTSTDERLIRTIVSS-PVFANYFDMPIQHINDKMLSLMKRGAGA 345

Query: 345 DDFRATMDLVDKIG-------------------YAQAFSF------------KYSPRLGT 373
              +  + L+ +                     + +  +F             YS    T
Sbjct: 346 ARIKELLSLMREAPNSFLRTGVIVGHPGEGEAEFDELCAFLREFKFDRISAFAYSKEEDT 405

Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG--- 430
               M  Q+     + RL  ++K  RE   +   A VG+ + ++IE    E     G   
Sbjct: 406 ASFAMP-QILARTISRRLNKIEKITREAIDNSMRALVGKKMPLIIEGASSEGEFFYGAKP 464

Query: 431 --RSPWLQSVVLNSK----NHNIGDIIKVRITDVKISTLYGELV 468
                 +   +L ++    N  +G + +  IT+     L   ++
Sbjct: 465 LAWDKDIDGEILINESYVQNLKVGGLYECEITEFAGDRLLARVL 508


>gi|266623032|ref|ZP_06115967.1| tRNA-I(6)A37 modification enzyme MiaB [Clostridium hathewayi DSM
           13479]
 gi|288865210|gb|EFC97508.1| tRNA-I(6)A37 modification enzyme MiaB [Clostridium hathewayi DSM
           13479]
          Length = 286

 Score =  204 bits (518), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 83/245 (33%), Positives = 137/245 (55%), Gaps = 15/245 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
            F ++++GCQMN  DS ++  +  + G+   ++ ++AD ++ NTC +R+ A ++VY  LG
Sbjct: 46  TFHIETFGCQMNARDSEKLTGILEASGFTETDT-EEADFVLYNTCTVRDNANQRVYGRLG 104

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQ--AEGEEILRRSPIVNVVVGPQTYYRLPELL-ER 142
            +  +K         +++ + GC+ Q     E+I +    V+++ G    ++L EL+ ER
Sbjct: 105 YLNRIKQK----NPAMMIALCGCMMQEETVVEKIKKSYRFVDIIFGTHNIFKLAELISER 160

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
               K VVD     +   E L       +RK    + + I  GC+ FC++C+VPY RG E
Sbjct: 161 MDEKKMVVDIWKETDRIVEELPT-----DRKYPFKSGVNIMFGCNNFCSYCIVPYVRGRE 215

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            SR+   +V E R+L+ +GV E+ LLGQNVN+  GK L+ E  TF+ LL  +  I GL R
Sbjct: 216 RSRNPQDIVGEIRRLVADGVVEVMLLGQNVNS-YGKNLE-EPMTFAKLLQEVEAIDGLRR 273

Query: 263 LRYTT 267
           +R+ T
Sbjct: 274 IRFMT 278


>gi|289675771|ref|ZP_06496661.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Pseudomonas
           syringae pv. syringae FF5]
          Length = 171

 Score =  203 bits (516), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 67/169 (39%), Positives = 98/169 (57%), Gaps = 2/169 (1%)

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
            L +M R HT  EY+  + ++R+  P I+ISSDFIVGFPGET+ DF  TM L++ +G+  
Sbjct: 2   SLAAMKRNHTTLEYKSRLRKLRAAVPGISISSDFIVGFPGETEKDFDNTMKLIEDVGFDF 61

Query: 362 AFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKH 421
           +FSF YSPR GTP +++ +   E +K ERL  LQ +L +Q    +   VG I  +L+  +
Sbjct: 62  SFSFVYSPRPGTPAADLKDDTPEALKKERLAALQHRLNQQGFEISRQMVGSIQRILVTDY 121

Query: 422 G-KEKGKLVGRSPWLQSVVLNSKNH-NIGDIIKVRITDVKISTLYGELV 468
             K+ G+L GR+   + V     N   IG    V I D +  +L G L+
Sbjct: 122 SKKDPGELQGRTENNRIVNFRCDNPKLIGQFADVHIDDAQPHSLRGSLL 170


>gi|205356717|ref|ZP_03223478.1| hypothetical protein Cj8421_1025 [Campylobacter jejuni subsp.
           jejuni CG8421]
 gi|205345455|gb|EDZ32097.1| hypothetical protein Cj8421_1025 [Campylobacter jejuni subsp.
           jejuni CG8421]
          Length = 354

 Score =  203 bits (516), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 83/351 (23%), Positives = 158/351 (45%), Gaps = 22/351 (6%)

Query: 96  KEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYS 155
            +   + V++ GC A ++G+E+L +   V  V+G     ++ E L        + + ++ 
Sbjct: 1   MQKKGIKVILTGCGAVSKGKELLDK-KQVFGVLGASNKDKINEFLGAKTSFYELGNLNFI 59

Query: 156 VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEAR 215
            +D              +    AF+ IQEGCD  C++C++P  RG   S     ++ +  
Sbjct: 60  DKDIVCEY---------ENHTKAFVKIQEGCDFACSYCIIPSVRGKSRSVDEKALLKQVE 110

Query: 216 KLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSD 275
            L  NG  EI L G N+ ++  K       T   LL  + +I G+ R+R  +  P  + +
Sbjct: 111 ILGANGYSEIVLTGTNIGSYGLK----NGTTLGKLLQKMGQILGIKRIRLGSLEPAQLDE 166

Query: 276 CLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDF 335
             ++   D   L  +LH+ +Q  S+++L+ M RR       ++ + I S     A+ +DF
Sbjct: 167 SFLE-ILDEAWLERHLHIALQHTSEKMLRIMRRRSHTDNDLKLFNAIASK--GYALGTDF 223

Query: 336 IVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQ 395
           IV  PGE+++ ++  +    +       +F +SPR  T  + M + ++  +  ERL  L+
Sbjct: 224 IVAHPGESEELWQEALRNFKEFPLTHIHAFIFSPRNNTHSATMKDVINGTLAKERLNTLK 283

Query: 396 KKLREQQVSFNDACVGQI-IEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445
             + +    F      Q+ +EVL+E   ++ G   G   +   + + S   
Sbjct: 284 SIVEKNNYEFRKK--NQVSLEVLVE--NQKDGFFEGYDQFFNKIKIKSDKD 330


>gi|312892375|ref|ZP_07751870.1| Radical SAM domain protein [Mucilaginibacter paludis DSM 18603]
 gi|311295159|gb|EFQ72333.1| Radical SAM domain protein [Mucilaginibacter paludis DSM 18603]
          Length = 210

 Score =  202 bits (515), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 70/209 (33%), Positives = 115/209 (55%), Gaps = 3/209 (1%)

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +R++TSHP+D++D ++      D +  Y+HLPVQSG+ RIL+ MNR +    Y   ID I
Sbjct: 1   MRFSTSHPKDITDEVLYTIARYDNICNYIHLPVQSGNSRILEMMNRTYDRDWYIDRIDAI 60

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML-EQ 381
           R + P  AIS+D I GF  ETD++ + T+ ++D + Y  A+ F YS R GT  +    + 
Sbjct: 61  RRIIPGCAISTDVITGFCTETDEEHQDTVSMMDYVQYDFAYMFMYSERPGTLAAKRYADD 120

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440
           + E+VK  RL  +  K ++  +    A +G++ +VLIE + K+  +   GRS     V+ 
Sbjct: 121 IPEDVKKTRLQEIVAKQQQYSLVRLQAQLGKVQKVLIEGYSKKSDRDYCGRSDQNAMVIF 180

Query: 441 N-SKNHNIGDIIKVRITDVKISTLYGELV 468
              +    G  + V       +TL G+++
Sbjct: 181 PVDERFKPGQYVNVLAEKCTTATLIGKII 209


>gi|58698371|ref|ZP_00373285.1| MiaB-like tRNA modifying enzyme [Wolbachia endosymbiont of
           Drosophila ananassae]
 gi|58535125|gb|EAL59210.1| MiaB-like tRNA modifying enzyme [Wolbachia endosymbiont of
           Drosophila ananassae]
          Length = 235

 Score =  202 bits (514), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 80/242 (33%), Positives = 127/242 (52%), Gaps = 9/242 (3%)

Query: 226 TLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLD 285
              G ++  + G  L G+    S +   L +I  L RLR ++    ++ D L+    +  
Sbjct: 1   MFTGVDITDF-GTDLLGKPSLGSMIRRVLKDIPELKRLRLSSIDVAEVDDELMDLIANES 59

Query: 286 VLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDD 345
            LMP+LHL +QSG++ ILK M RRH   +  +   +++S+RP+IA  +D I GFP ETD+
Sbjct: 60  RLMPHLHLSLQSGNNLILKRMKRRHNREQVIEFCHKMKSLRPNIAFGADIIAGFPTETDE 119

Query: 346 DFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSF 405
            F+ T+DL+ K       +F YS R  TP + M  QV ENV+ ER+  L++  +E   SF
Sbjct: 120 MFQDTVDLLKKTNIVYLHAFPYSERKNTPAARMP-QVPENVRKERVKNLREVNKEIMSSF 178

Query: 406 NDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYG 465
             + +     VL+E++       VGR+     + L SK      I+KV +  V+ + L G
Sbjct: 179 CQSLINTKQSVLVEQNN------VGRAENFALIKLESKAQAK-SIVKVNVKGVENNYLIG 231

Query: 466 EL 467
            +
Sbjct: 232 NI 233


>gi|213419959|ref|ZP_03353025.1| hypothetical protein Salmonentericaenterica_20195 [Salmonella
           enterica subsp. enterica serovar Typhi str. E01-6750]
          Length = 231

 Score =  202 bits (514), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 73/232 (31%), Positives = 117/232 (50%), Gaps = 13/232 (5%)

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNA------WRGKGLDGE--KCTFSDLLYSLSEIKGL 260
            V+ EA++L+D GV EI ++ Q+ +A       R    +GE  K +   L   LS++   
Sbjct: 1   DVLSEAKRLVDAGVKEILVISQDTSAYGVDVKHRTGFHNGEPMKTSMVSLCEQLSKLGVW 60

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            RL Y   +P       + A G    ++PYL +P+Q  S RILK M R  +       I 
Sbjct: 61  TRLHYVYPYPHVDDVIPLMAEG---KILPYLDIPLQHASPRILKLMKRPGSVDRQLARIK 117

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           + R + P++ + S FIVGFPGET++DF+  +D + +    +   FKYSP  G   + + +
Sbjct: 118 QWREICPELTLRSTFIVGFPGETEEDFQMLLDFLKEARLDRVGCFKYSPVEGAGANELPD 177

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS 432
           QV E VK ER     +  ++         VG+ I V++++  +E    +GRS
Sbjct: 178 QVPEEVKEERWNRFMQLQQQISAERLQEKVGREILVIVDEVDEEGA--IGRS 227


>gi|224417634|ref|ZP_03655640.1| 2-methylthioadenine synthetase [Helicobacter canadensis MIT
           98-5491]
 gi|313141180|ref|ZP_07803373.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Helicobacter canadensis
           MIT 98-5491]
 gi|313130211|gb|EFR47828.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Helicobacter canadensis
           MIT 98-5491]
          Length = 246

 Score =  202 bits (514), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 90/261 (34%), Positives = 137/261 (52%), Gaps = 17/261 (6%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++ ++++ GC MN  DS  +       + Y       +ADLI++NTC +REK  +K++
Sbjct: 1   MNKKLYIETLGCAMNERDSEHIIAELEEKENYTLTEDPKEADLILINTCSVREKPEKKLF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S +G+   +K    K      + V GC A   G EIL++S  VN V+G +   ++ ++L 
Sbjct: 61  SEIGQYAKIKKEDAK------IGVCGCTASHLGNEILKKSKAVNFVLGARNVSKISQILH 114

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           +     RV   D   +D     S           +   + I  GCDK CT+C+VP+TRG 
Sbjct: 115 K----DRVAWVDIDYDD-----STYVFSSKHNSTLKGMINISIGCDKQCTYCIVPHTRGN 165

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL-DGEKCTFSDLLYSLSEIKGL 260
           EIS     ++ EA+KL+DNG  EI LLGQNVN +  +   D  K  F+ LL  +S+I GL
Sbjct: 166 EISIPADLILKEAKKLVDNGTKEILLLGQNVNNYGRRFSNDHRKINFTQLLNEISQINGL 225

Query: 261 VRLRYTTSHPRDMSDCLIKAH 281
            R+R+T+ HP  M D  I   
Sbjct: 226 ERIRFTSPHPLHMDDEFINEF 246


>gi|213416843|ref|ZP_03349987.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Salmonella enterica
           subsp. enterica serovar Typhi str. E01-6750]
          Length = 187

 Score =  202 bits (513), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 59/152 (38%), Positives = 94/152 (61%), Gaps = 1/152 (0%)

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
           II ++R+ RPDI ISSDFIVGFPGET DDF  TM L+  + +  ++SF +S R GTP ++
Sbjct: 2   IIRKLRAARPDIQISSDFIVGFPGETTDDFEKTMKLIADVNFDMSYSFIFSARPGTPAAD 61

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQ 436
           M++ V E  K +RL  LQ+++ +Q ++++   +G    +L+E   ++   +L GR+   +
Sbjct: 62  MVDDVPEEEKKQRLYILQERINQQAMAWSRRMLGTTQRILVEGTSRKNIMELSGRTENNR 121

Query: 437 SVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            V        IG  + V ITDV  ++L G++V
Sbjct: 122 VVNFEGTPEMIGKFVDVEITDVYPNSLRGKVV 153


>gi|224419273|ref|ZP_03657279.1| 2-methylthioadenine synthetase [Helicobacter canadensis MIT
           98-5491]
          Length = 192

 Score =  201 bits (511), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 60/192 (31%), Positives = 112/192 (58%), Gaps = 5/192 (2%)

Query: 282 GDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPG 341
            +   +   +H+P+QSGS +IL+ M R ++   +   + ++R++ PD++I +D IVGFP 
Sbjct: 1   ANNPKICKAIHMPLQSGSTKILQKMKRGYSKEWFLDRVAKMRALIPDLSIGTDIIVGFPT 60

Query: 342 ETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ-----VDENVKAERLLCLQK 396
           E+++DF  T+D+++K+ +   +SF YS R  T  +  L+      +DE +   RL+ L+ 
Sbjct: 61  ESEEDFLDTLDVLEKVRFDTLYSFIYSTRPHTQAATWLDNGEIQLLDEEIAKNRLMILKD 120

Query: 397 KLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRIT 456
           + +E     N   +G+I  VL E + +E   L GRS   + + + +  + IG+I  V+I+
Sbjct: 121 RHKEILAQENAKQLGKIHPVLFESYDEENFLLEGRSDTNKLIRVKAGRNLIGEICNVKIS 180

Query: 457 DVKISTLYGELV 468
           ++K + L GEL+
Sbjct: 181 EIKGAQLIGELL 192


>gi|206895616|ref|YP_002247217.1| Fe-S oxidoreductase [Coprothermobacter proteolyticus DSM 5265]
 gi|206738233|gb|ACI17311.1| Fe-S oxidoreductase [Coprothermobacter proteolyticus DSM 5265]
          Length = 388

 Score =  200 bits (510), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 101/386 (26%), Positives = 180/386 (46%), Gaps = 45/386 (11%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +F V  +GC++N YD+ R        G   V   +DAD+IVL +C +  KA  +V  F+ 
Sbjct: 2   KFAVHFFGCKVNQYDAARWTIGL---GKNYVAQPNDADIIVLFSCVVTHKAEAEVRRFVQ 58

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           + +              +++ GC       ++      V +V   Q    + +L      
Sbjct: 59  KWKAQGKK---------IILTGCGTNITLTDLA--DESVTLVRVDQLDSFMQQL------ 101

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                         F    ++    +R RG   F+ ++EGC+  CT+CV    RG   SR
Sbjct: 102 ------------GSFSAPKVIPFYPDRSRG---FVKVEEGCNWRCTYCVSSLERGEVRSR 146

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI--KGLVRL 263
            L +++ E R + + G+ E+ L G N+  WR    +GEK  + DL+  +S++  +  +R+
Sbjct: 147 PLGEILQEIRLMSERGISEVVLTGTNLMLWR----EGEK-NYLDLIECVSKVAAEYNMRV 201

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R ++ +P  ++  +I+       L  +LH+ +QS SD++LKSMNR       + ++  +R
Sbjct: 202 RLSSVYPEMINARMIELFCVYP-LARHLHISLQSASDKVLKSMNRAPLGDLTQMLLQ-LR 259

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           ++    A ++D IVG+P ET  D   TM  +  + +++   F +S R GTP S M   + 
Sbjct: 260 NLDSGFAFTADIIVGYPTETVQDSLMTMSFLSDLRFSKVHVFPFSVRPGTPASQMR-TLP 318

Query: 384 ENVKAERLLCLQKKLREQQVSFNDAC 409
             V  +R   L +     + SF ++ 
Sbjct: 319 STVVRKRAALLNELGETLKKSFIESQ 344


>gi|207109287|ref|ZP_03243449.1| putative ATP-binding protein [Helicobacter pylori HPKX_438_CA4C1]
          Length = 207

 Score =  200 bits (509), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 78/207 (37%), Positives = 121/207 (58%), Gaps = 1/207 (0%)

Query: 212 DEARKLIDNGVCEITLLGQNVNAWRGKGL-DGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270
            EA KL +NG  E+ LLGQNVN +  +   +  K  FSDLL  LSEI+G+ R+R+T+ HP
Sbjct: 1   KEAEKLANNGTKELMLLGQNVNNYGTRFSSEHAKVDFSDLLDKLSEIQGIERIRFTSPHP 60

Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330
             M+D  ++       +   +H+P+QSGS  +LK M R ++   +   ++R++++ P++ 
Sbjct: 61  LHMNDAFLERFAKNPKVCKSIHMPLQSGSSAVLKMMRRGYSKEWFLNRVERLKALVPEVG 120

Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER 390
           IS+D IVGFP E+D DF  TM++++K+ +   +SF YSPR  T      E+V   V + R
Sbjct: 121 ISTDIIVGFPNESDKDFEDTMEVLEKVRFDTLYSFIYSPRPFTEAGAWKERVPLEVSSSR 180

Query: 391 LLCLQKKLREQQVSFNDACVGQIIEVL 417
           L  LQ + +E         VG+   VL
Sbjct: 181 LERLQNRHKEILEEKAKLEVGKTHVVL 207


>gi|298712341|emb|CBJ33133.1| n/a [Ectocarpus siliculosus]
          Length = 442

 Score =  200 bits (508), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 97/294 (32%), Positives = 151/294 (51%), Gaps = 44/294 (14%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF--- 83
           FF+++YGCQMNV D+  +  +    G+   +++++A +++ NTC IRE+A  KV+     
Sbjct: 150 FFIETYGCQMNVSDTEVVRAILLKAGFSEADTLEEAGVVLANTCAIRERAEGKVWDRLKF 209

Query: 84  ---LGRIRNL------KNSRIKEGG--DLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT 132
              + R R L      K  +   GG  DL + V GC+A+   E +L R   V++V GP  
Sbjct: 210 FSSIRRRRKLAATHAAKARQPVPGGLSDLKIGVLGCMAERLKESLLER-GGVDLVTGPDA 268

Query: 133 YYRLPELLERARFGKR-----VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCD 187
           Y  LP LLE             V+   S ++ +  ++ V    N    V+AF++I  GC+
Sbjct: 269 YRDLPRLLELVGTSGSGESTGAVNVQLSQDETYADIAPVRLVNNTSEAVSAFISIMRGCN 328

Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL------- 240
             CT+C+VP+TRG E SR L  +VDEA +L D+GV E+TLLGQNVN++  +         
Sbjct: 329 NMCTYCIVPFTRGRERSRPLGSIVDEAMRLRDDGVREVTLLGQNVNSYHDRSEASTALYN 388

Query: 241 -----------------DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCL 277
                             G    F++LL  ++     VR+R+T+ HP+D  D +
Sbjct: 389 GTDYTTTAGFGNTFRSRGGAGAYFAELLAEVASAVPEVRVRFTSPHPKDFPDEV 442


>gi|297706881|ref|XP_002830253.1| PREDICTED: CDK5 regulatory subunit-associated protein 1-like,
           partial [Pongo abelii]
          Length = 282

 Score =  200 bits (508), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 80/270 (29%), Positives = 128/270 (47%), Gaps = 35/270 (12%)

Query: 221 GVCEITLLGQNVNAWRG---------------KGLDGEKCT------FSDLLYSLSEIKG 259
           G+ E+TLLGQNVN++R                +G      T      F+ LL  +S +  
Sbjct: 1   GLKEVTLLGQNVNSFRDNSEVQFNNAVPTNLSRGFTTNYKTKQGGLRFAHLLDQVSRVDP 60

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
            +R+R+T+ HP+D  D +++   + + +   +HLP QSGS R+L++M R ++   Y +++
Sbjct: 61  EMRIRFTSPHPKDFPDEVLQLIHERENICKQIHLPAQSGSSRVLEAMRRGYSREAYVELV 120

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NM 378
             +R   P +++SSDFI GF GET++D   T+ L+ ++ Y   F F YS R  T     +
Sbjct: 121 HHVRESIPGVSLSSDFIAGFCGETEEDHIQTVSLLREVQYNMGFLFAYSMRQKTRAYHRL 180

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQS 437
            + V + VK  RL  L    RE+    N   VG    VL+E   K     L GR+     
Sbjct: 181 KDDVPKEVKLRRLEELITVFREEATKANQTSVGCTQLVLVEGLSKRSATDLCGRNDGNLK 240

Query: 438 VVLNSKN------------HNIGDIIKVRI 455
           V+                    GD + V++
Sbjct: 241 VIFPDAEMEDVNNPGLRVRAQPGDYVLVKV 270


>gi|238022285|ref|ZP_04602711.1| hypothetical protein GCWU000324_02192 [Kingella oralis ATCC 51147]
 gi|237866899|gb|EEP67941.1| hypothetical protein GCWU000324_02192 [Kingella oralis ATCC 51147]
          Length = 164

 Score =  199 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 60/164 (36%), Positives = 92/164 (56%), Gaps = 1/164 (0%)

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           M R +TA EY+ II ++R++RPD+ +SSDFIVGFPGET+ +F  T+ LV  I +  +F F
Sbjct: 1   MKRGYTALEYKSIIRKLRAIRPDLCLSSDFIVGFPGETEREFEQTLKLVKDIAFDLSFVF 60

Query: 366 KYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KE 424
            YSPR GTP +N+ +      K  RL  L + +  +    N   +G +   L+E    K+
Sbjct: 61  IYSPRPGTPAANLPDDTPHEEKVRRLEALNEVIEAETARINQTMLGTVQRCLVEGISKKD 120

Query: 425 KGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
             +L  R+   + V        I  ++++ ITD +  +L GELV
Sbjct: 121 PDQLQARTANNRVVNFYGDVSLINQMVEIEITDARTFSLSGELV 164


>gi|153840611|ref|ZP_01993278.1| 2-methylthioadenine synthetase [Vibrio parahaemolyticus AQ3810]
 gi|149745726|gb|EDM56856.1| 2-methylthioadenine synthetase [Vibrio parahaemolyticus AQ3810]
          Length = 436

 Score =  198 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 61/153 (39%), Positives = 89/153 (58%), Gaps = 1/153 (0%)

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
           Y+ II ++R  RPDI ISSDFIVGFPGETD DF+ TM L+  + +  +FSF +SPR GTP
Sbjct: 2   YKSIIRKLRKARPDIQISSDFIVGFPGETDKDFQDTMKLIKDVDFDMSFSFIFSPRPGTP 61

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSP 433
            ++    + E VK ERL  LQ+ +  Q + ++   +     VL+E   K+   +L  R+ 
Sbjct: 62  AADYPCDIPEQVKKERLYELQQTINAQAMRYSRLMLATEQRVLVEGPSKKNLMELRARTE 121

Query: 434 WLQSVVLNSKNHNIGDIIKVRITDVKISTLYGE 466
             + V        IG  + V+ITDV  ++L G+
Sbjct: 122 NNRVVNFEGSADLIGQFVDVKITDVFANSLRGD 154


>gi|148907407|gb|ABR16837.1| unknown [Picea sitchensis]
          Length = 332

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 81/262 (30%), Positives = 123/262 (46%), Gaps = 39/262 (14%)

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
            FS+LL  LS     +R R+T+ HP+D  D L+    D   +   +HLP QSGS  +L+ 
Sbjct: 46  RFSNLLDRLSIEFPEMRFRFTSPHPKDFPDDLLFLMKDRWNICRSIHLPAQSGSTAVLER 105

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           M R +T   Y  +++RI+++ PD+ +SSDFI GF GET+ D   T+ L+  +GY  A+ F
Sbjct: 106 MRRGYTREVYLDLVERIQNIIPDVGLSSDFICGFCGETEQDHADTLSLIKSVGYDMAYLF 165

Query: 366 KYSPRLGTPGSN-MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE 424
            YS R  T      ++ V ++VK  RL  L    RE      D+ VG    +L+E   K 
Sbjct: 166 AYSLREKTHAHRNYVDDVPDDVKQRRLSELISAFRESTGQRYDSQVGTTQLLLVEGPNKR 225

Query: 425 --KGKLVGRSPWLQSVVL------------------------------------NSKNHN 446
             + +L+G+S     +                                      N +N  
Sbjct: 226 APESELIGKSDRGHRISFQNVPLTDVSKLPPHRMEIAGLGDRPAEDALNLAINGNKRNPR 285

Query: 447 IGDIIKVRITDVKISTLYGELV 468
           IGD ++V IT    +TL+GE +
Sbjct: 286 IGDYVEVLITKSSRATLFGEAL 307


>gi|260220928|emb|CBA28986.1| Ribosomal protein S12 methylthiotransferase rimO [Curvibacter
           putative symbiont of Hydra magnipapillata]
          Length = 507

 Score =  197 bits (501), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 76/327 (23%), Positives = 139/327 (42%), Gaps = 39/327 (11%)

Query: 13  MVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHI 72
           +++        P+  FV S GC   + DS  +     ++GY+   +   ADL+++NTC  
Sbjct: 15  ILTPTQTAQAAPKVGFV-SLGCPKALTDSELILTQLSAEGYQTSKTFQGADLVIVNTCGF 73

Query: 73  REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGE----EILRRSPIVNVVV 128
            + A ++    +G              +  V+V GC+     +     + +  P V  V 
Sbjct: 74  IDDAVKESLDTIGEALA---------ENGRVIVTGCLGAKTTDGGENMVRQMHPKVLAVT 124

Query: 129 GPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDG--GYNRKRGVTAFLTIQEGC 186
           GP     + + +         ++     +   + +    G  G        A+L I EGC
Sbjct: 125 GPHATQEVMDAVH--------LNLPKPHDPFLDLVPQSFGVAGVKLTPRHYAYLKISEGC 176

Query: 187 DKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA------WRGKGL 240
           +  CTFC++P  RG  +SR +  V+ EAR L + GV E+ ++ Q+ +A      +R    
Sbjct: 177 NHRCTFCIIPSMRGDLVSRPIGDVLSEARALFEGGVKELLVISQDTSAYGVDVKYRTGFW 236

Query: 241 DGE--KCTFSDLLYSLSEI----KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP 294
           DG+  K    +L+ +L E+       VRL Y   +P       + A G    ++PYL +P
Sbjct: 237 DGKPVKTRMLELVQALGELAEPYGAWVRLHYVYPYPSVDEIVPLMATG---RVLPYLDVP 293

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDR 321
           +Q     +L+ M R  +  +  + + +
Sbjct: 294 LQHSHPDVLRRMKRPASGEKNLERLQQ 320


>gi|210612680|ref|ZP_03289428.1| hypothetical protein CLONEX_01630 [Clostridium nexile DSM 1787]
 gi|210151482|gb|EEA82490.1| hypothetical protein CLONEX_01630 [Clostridium nexile DSM 1787]
          Length = 262

 Score =  197 bits (500), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 78/231 (33%), Positives = 122/231 (52%), Gaps = 13/231 (5%)

Query: 14  VSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIR 73
           V QI D+   P  F V ++GCQMN  DS ++  +    GY      D AD ++ NTC +R
Sbjct: 36  VKQISDELQRPLTFCVTTFGCQMNARDSEKLVGVLEQIGYVEEPDEDKADFVIYNTCTVR 95

Query: 74  EKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQ 131
           E A  +VY  LG+++++K    K    +++ + GC+ Q     E++ +    V+++ G  
Sbjct: 96  ENANMRVYGRLGQLKHVK----KSNPHMMIGLCGCMMQEPEVVEKLKKSYRFVDLIFGTH 151

Query: 132 TYYRLPELLE-RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190
             Y+  EL+  R   G+ V+D     +   E L        RK    + + I  GC+ FC
Sbjct: 152 NIYKFAELIATRFESGRMVIDIWKDTDKIVEDLP-----SERKFSFKSGVNIMFGCNNFC 206

Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD 241
           ++C+VPY RG E SR+   ++ E   L+ +GV E+ LLGQNVN+  GK LD
Sbjct: 207 SYCIVPYVRGRERSRNPKDIIREIEALVADGVMEVMLLGQNVNS-YGKNLD 256


>gi|224418855|ref|ZP_03656861.1| 2-methylthioadenine synthetase [Helicobacter canadensis MIT
           98-5491]
          Length = 278

 Score =  196 bits (498), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 66/290 (22%), Positives = 134/290 (46%), Gaps = 18/290 (6%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + ++  + S GC  N+ DS  M        YE    +++AD++++NTC   E A ++   
Sbjct: 1   MQKKLHLISLGCTKNLVDSEVMLGKLSE--YENTQEINEADVVIVNTCGFIEAAKKESIQ 58

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            L      K          ++V +GC+++   +E+    P ++++ G   Y ++ +++E 
Sbjct: 59  TLLEALETKKQ------GAILVASGCLSERYAKELKEEIPELDIITGVGDYDKIDKMIEE 112

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            + G++++     V    E    +  G      + A++ + EGC++ C+FC +P  +G  
Sbjct: 113 RQKGEKILSNAKGVFLADETNKRIISGSK----IHAYIKLSEGCNQKCSFCAIPSFKGKL 168

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG--- 259
            SR+L   + E R L   G  + T + Q+ ++   + L G K    +L+  + ++     
Sbjct: 169 HSRTLESTLKEVRNLASQGYSDFTFISQD-SSSYLRDL-GIKDGLVELISGIEDLAKEGV 226

Query: 260 -LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
            +   R    +P   S  LI+   D  +   Y  +P+Q  S ++LK+M R
Sbjct: 227 NIKSARILYLYPATTSKKLIQKIIDSPIFHNYFDMPLQHASQKVLKTMGR 276


>gi|302875948|ref|YP_003844581.1| Radical SAM domain-containing protein [Clostridium cellulovorans
           743B]
 gi|307686658|ref|ZP_07629104.1| Radical SAM domain-containing protein [Clostridium cellulovorans
           743B]
 gi|302578805|gb|ADL52817.1| Radical SAM domain protein [Clostridium cellulovorans 743B]
          Length = 382

 Score =  195 bits (497), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 95/397 (23%), Positives = 150/397 (37%), Gaps = 59/397 (14%)

Query: 42  LRMEDMFFSQGYERVNS-------------------MDDADLIVLNTCHIREKAAEKVYS 82
            +M + F   GYE VN                      +ADL VL TC   +   +  + 
Sbjct: 19  EKMRNFFRENGYELVNDGTGLDPTNKYAFPLEDLVISPEADLFVLTTCGFSKSIEDGDFD 78

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            L  I   K           V+V GC+ +   E +                    E    
Sbjct: 79  ALKMIMKYKK------PSAKVIVGGCIVKIAKERL------------------DEEFDGE 114

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
               K     D  VE K     I DG          F+ IQ+GC+  C++C +    G  
Sbjct: 115 RFDAKSYNLLDEFVEHKVSFDEIKDGNV-MNFTDNYFIKIQDGCNHRCSYCAIWKAAGKS 173

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            S+ +++V++E    +  G   I  LG+ + A  G         F++LL  + +I+G   
Sbjct: 174 TSKPIAEVIEEFNYGLRQGFKHIYFLGECMGA-YGLDF---GSNFAELLEEIDKIEGDYD 229

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLM-----PYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
           L      P       ++ +  +  L        LH+P+QSG DRILK M R       ++
Sbjct: 230 LLIEDISPIYF----LRNYEAIKKLCIKGVIRSLHVPIQSGCDRILKLMMRTGDMALVKE 285

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
            +  +++  P+  +SS  IVGFP ET ++F+ T++      +       +S R G P + 
Sbjct: 286 KMQELKNAAPNTTLSSAVIVGFPTETVEEFQETLEYCKDSCFDTVACHVFSARDGAPAAE 345

Query: 378 MLEQVDENVKAERLLCLQKKLREQQV--SFNDACVGQ 412
           M  QVDE  K  R    ++K              VG+
Sbjct: 346 MDGQVDEEEKYRRYTEFKEKFVGITRVDPNQRKYVGE 382


>gi|116334998|ref|YP_802493.1| hypothetical protein CRP_096 [Candidatus Carsonella ruddii PV]
 gi|116235279|dbj|BAF35127.1| conserved hypothetical protein [Candidatus Carsonella ruddii PV]
          Length = 426

 Score =  195 bits (497), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 107/422 (25%), Positives = 205/422 (48%), Gaps = 31/422 (7%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
            ++K+ GC +N Y S ++         + + +   ++L++LN+C +R+    K+   L +
Sbjct: 7   LYIKTLGCNINTYISSKIIYNIKYFKIKILKNFLKSNLLILNSCVVRKNPQIKILKELKK 66

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPI-VNVVVGPQTYYRLPELLERARF 145
                   IK+   +++++ GC+   E E+I     + +++V+   +Y  + ++L     
Sbjct: 67  WF-----FIKKYKKIIIILTGCL--TEFEKINSLISLKIDIVINSLSYIFIKKILN---- 115

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                   Y    K   L      +N K+ +  +++I +GC+  CT+C++P T+G E   
Sbjct: 116 -------LYLKTKKKILLIKKKNNFNIKKNILNYISIMKGCNHSCTYCIIPQTKGKEFYY 168

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           S S + +     I     EITLLGQNVN++  K ++     F+ L++++S+IK + R+ +
Sbjct: 169 SFSYIFNYIINNIKKKTTEITLLGQNVNSYYNKNVN-----FNSLIFNISKIKNIKRINF 223

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
            +S+  D +      + ++  +  ++HLP+QSGS+ ILK MNR++    Y   I +I+ +
Sbjct: 224 LSSNIIDFNKNFYNLYKNVKKISNHIHLPIQSGSNLILKKMNRKYNLNHYICFIKKIQKI 283

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
           +     S+D IV FP E   DF  T+ ++ KI +   + F YS    T   N  E     
Sbjct: 284 KFT-TFSTDIIVSFPNENFFDFDQTLKVLKKIKFLDIYYFLYSKLRNTISFNFKEN-SFF 341

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445
           VK  +L   QK + +     N     +++ +L+  +   K   +G+   L+ V      +
Sbjct: 342 VKKFKLFIFQKSIIKNYYLLN----NRVVRILVIGY-ISKNIFIGKMDNLKLVFFEYYKY 396

Query: 446 NI 447
           NI
Sbjct: 397 NI 398


>gi|294643380|ref|ZP_06721199.1| conserved domain protein [Bacteroides ovatus SD CC 2a]
 gi|292641258|gb|EFF59457.1| conserved domain protein [Bacteroides ovatus SD CC 2a]
          Length = 209

 Score =  195 bits (497), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 62/196 (31%), Positives = 111/196 (56%), Gaps = 8/196 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F+++YGCQMNV DS  +  +    GY    ++++AD + +NTC IR+ A +K+ + L
Sbjct: 20  KKLFIETYGCQMNVADSEVIASVMQMAGYSVAETLEEADAVFMNTCSIRDNAEQKILNRL 79

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
               +LK  + +    L+V V GC+A+   ++++     V++VVGP  Y  LP+L+    
Sbjct: 80  EFFHSLKKKKKR----LIVGVLGCMAERVKDDLITNH-HVDLVVGPDAYLTLPDLIAAVE 134

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G++ ++ + S  + +  +       N   G   F++I  GC+ FCT+C+VPYTRG E S
Sbjct: 135 TGEKAINVELSTTETYRDVIPSRICGNHISG---FVSIMRGCNNFCTYCIVPYTRGRERS 191

Query: 205 RSLSQVVDEARKLIDN 220
           R +  +++E   L+  
Sbjct: 192 RDVESILNEVADLVAK 207


>gi|294631788|ref|ZP_06710348.1| MiaB family RNA modification enzyme [Streptomyces sp. e14]
 gi|292835121|gb|EFF93470.1| MiaB family RNA modification enzyme [Streptomyces sp. e14]
          Length = 491

 Score =  194 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 70/260 (26%), Positives = 119/260 (45%), Gaps = 9/260 (3%)

Query: 216 KLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSD 275
            L + GV EI L+ +N N   GK L G+      LL  L+E+ G+ R+R +   P +M  
Sbjct: 224 WLAEQGVKEIMLVSEN-NTSYGKDL-GDIRLLESLLPELAEVDGIERVRVSYLQPAEMRP 281

Query: 276 CLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDF 335
            LI        + PY  L  Q  +  +L++M R      + +++D IRS  P   + S+F
Sbjct: 282 GLIDVLTSTPKVAPYFDLSFQHSAPGVLRAMRRFGDTDRFLELLDTIRSKAPQAGVRSNF 341

Query: 336 IVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQ 395
           IVGFPGE++ D       ++         F YS   GT  +    ++D++V  ERL  + 
Sbjct: 342 IVGFPGESEADLAELERFLNGARLDAIGVFGYSDEEGTEAATYENKLDQDVVDERLAHIS 401

Query: 396 KKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVV--LNSKNHNIGD 449
           +   E      +  +G+ + VL+E    E+G L GR    +P     V   +++    G 
Sbjct: 402 RLAEELVSQRAEERLGETVRVLVESVDAEEGAL-GRGEHQAPETDGQVRLTDAEGLTAGR 460

Query: 450 IIKVRITDVKISTLYGELVV 469
           +++ ++   +   L  E + 
Sbjct: 461 MVEAKVVGTEGVDLVAEPLT 480



 Score = 97.7 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 37/154 (24%), Positives = 63/154 (40%), Gaps = 6/154 (3%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +   + + GC  N  DS  +     + G++ V    DAD+ V+NTC   E A +     L
Sbjct: 5   RTVALVTLGCARNEVDSEELAGRLEADGWQLVEDAADADVAVVNTCGFVEAAKKDSVDAL 64

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
               +LK+     G    VV  GC+A+  G+E+    P  + V+G   Y  + + L+   
Sbjct: 65  LEANDLKD----HGRTQAVVAVGCMAERYGKELAEALPEADGVLGFDDYADISDRLQTIL 120

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTA 178
            G   +   ++  D+ + L I            A
Sbjct: 121 SGG--IHAAHTPRDRRKLLPISPAERQEAGAAVA 152


>gi|331005430|ref|ZP_08328810.1| tRNA-i(6)A37 methylthiotransferase [gamma proteobacterium IMCC1989]
 gi|330420763|gb|EGG95049.1| tRNA-i(6)A37 methylthiotransferase [gamma proteobacterium IMCC1989]
          Length = 184

 Score =  194 bits (493), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 61/166 (36%), Positives = 96/166 (57%), Gaps = 2/166 (1%)

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
           +M R HT  EY+  +  ++ +RPDI+ SSDFI+GFPGET+ DF  TM+L+  + +  +FS
Sbjct: 2   AMKRGHTVLEYKSKLRALKKIRPDISFSSDFIIGFPGETEQDFLGTMNLIQDMNFDMSFS 61

Query: 365 FKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-K 423
           F YS R GTP +++ +   E +K +RL  LQ ++ +Q    +   VG +  VLI  +  K
Sbjct: 62  FVYSARPGTPAADLPDDTPEEIKKQRLKILQDRINQQSFDISRKMVGNVERVLITGYSKK 121

Query: 424 EKGKLVGRSPWLQSVVLNSKN-HNIGDIIKVRITDVKISTLYGELV 468
           + G+L GR+   + V     N   IG  + + I +   ++L G LV
Sbjct: 122 DPGQLSGRTENNRIVNFRCDNAELIGKFVDIDIQEALPNSLRGVLV 167


>gi|328794005|ref|XP_003251960.1| PREDICTED: putative methylthiotransferase RP416-like, partial [Apis
           mellifera]
          Length = 447

 Score =  193 bits (490), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 76/251 (30%), Positives = 121/251 (48%), Gaps = 8/251 (3%)

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           S S+  VVD+ + L      EI L G ++ +W G+ L  +          L ++  L RL
Sbjct: 1   SVSVKGVVDQVKALTQQQYNEIVLTGVDIASW-GRDLKHKGRLGDLCKAILKDVPELKRL 59

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R ++  P  M   L          MP+LHL +Q+GSD ILK M RRH   +   +++++R
Sbjct: 60  RLSSIDPIGMDPVLWDLMASESRFMPHLHLSLQAGSDMILKRMKRRHQTKDVGSLVEQLR 119

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           S+RPDI +S+D I GFP E +  F+ T D +  +       F YS R GTP + M   + 
Sbjct: 120 SIRPDIGLSADIIAGFPTEDESYFQETYDFLKTVAIPYLHVFPYSERKGTPAAQMP-AIA 178

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
            +V+ ER   L+    +   S+++  + + + +L+E   +      G S    +  L  K
Sbjct: 179 VSVRKERAARLRNLGAKIASSYHECFINKTVSILMETVDR------GHSEQFSAATLTGK 232

Query: 444 NHNIGDIIKVR 454
               G+II  R
Sbjct: 233 EAIPGEIITAR 243


>gi|942592|gb|AAC44030.1| unknown [Mycoplasma iowae]
          Length = 249

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 72/250 (28%), Positives = 130/250 (52%), Gaps = 6/250 (2%)

Query: 220 NGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIK 279
               EI L G N   +    LD    TF DLL +++++ G  R+R ++  P  ++D +I 
Sbjct: 4   KKFKEIVLTGVNTAGY----LDENNNTFFDLLNNINKLDGDFRVRISSLEPFQINDEIID 59

Query: 280 AHGDLDV-LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVG 338
                      + H+ +QSGSD +LK MNR++T  E+ +++ +I +  P    ++D+IVG
Sbjct: 60  LVTSNKKRFCQHWHICLQSGSDDVLKKMNRKYTTDEFYKLMQKILNKSPLTNFTTDYIVG 119

Query: 339 FPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKL 398
           FP ETD+D + ++D ++KI       F YS R  T  S+  + ++++ K +R+  + K  
Sbjct: 120 FPTETDEDQKKSIDFLNKIKLYDMHIFPYSKRNNTRSSHYKD-INDSTKKDRVKEITKLN 178

Query: 399 REQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDV 458
              +       +G+  EVL EK  +++    G S     V++ S ++    ++KVRI  +
Sbjct: 179 YLNKKENLKKYIGKTCEVLFEKKKEDEKMWSGYSNEYCRVMVESGDNLENKMLKVRIKKI 238

Query: 459 KISTLYGELV 468
              +L GE++
Sbjct: 239 FFDSLVGEII 248


>gi|261339142|ref|ZP_05967000.1| hypothetical protein ENTCAN_05363 [Enterobacter cancerogenus ATCC
           35316]
 gi|288318985|gb|EFC57923.1| RNA modification enzyme, MiaB family [Enterobacter cancerogenus
           ATCC 35316]
          Length = 272

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 70/264 (26%), Positives = 119/264 (45%), Gaps = 27/264 (10%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
           P +    S GC  N+ DS R+     ++GY+ V S D+AD++++NTC   + A ++    
Sbjct: 7   PPKIGFVSLGCPKNLVDSERILTELRTEGYDVVPSYDNADMVIVNTCGFIDSAVQESLEA 66

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G                 V+V GC+  A+ ++I    P V  + GP +Y ++ E +   
Sbjct: 67  IGEALTENGK---------VIVTGCLG-AKVDQIREVHPKVLEITGPHSYEQVLEHVHHY 116

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
                         + F  L + + G        A+L I EGC+  CTFC++P  RG  +
Sbjct: 117 --------VPKPKHNPFLSL-VPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGDLV 167

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNA------WRGKGLDGE--KCTFSDLLYSLS 255
           SR + +V+ EA++L D GV E+ ++ Q+ +A       R    +GE  K +   L   L+
Sbjct: 168 SRPIGEVLAEAKRLADAGVKELLVISQDTSAYGVDVKHRSGFHNGEPVKTSMVGLCEQLA 227

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIK 279
           ++    RL Y   +P         
Sbjct: 228 KLGIWTRLHYVYPYPHVDDVDPAD 251


>gi|299471728|emb|CBN76949.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Ectocarpus siliculosus]
          Length = 455

 Score =  192 bits (487), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 62/167 (37%), Positives = 99/167 (59%), Gaps = 2/167 (1%)

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
           ++LK+M R +T   Y +IIDRIR + PD AI+ D IVGFPGET++ F+ T+DL++++ + 
Sbjct: 282 QVLKNMRRGYTITRYMRIIDRIRELSPDAAITGDVIVGFPGETEEQFQHTLDLMERVKFD 341

Query: 361 QAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420
              +F YSPR  T  +    QV E+VKA+RL  + +         +D  +G++ EVL+E+
Sbjct: 342 NLNTFSYSPRPNTEAALWENQVPEDVKADRLQRVMRLGCTHAQERSDRYMGRVEEVLVEE 401

Query: 421 HG-KEKGKLVGRSPWLQSVVLNSK-NHNIGDIIKVRITDVKISTLYG 465
              K   +++GR+   + V LN       G +IK  IT+ +  +L G
Sbjct: 402 RNPKNAAQVMGRTRTNRPVFLNGDIGQLKGKLIKAEITECRPWSLTG 448


>gi|76156036|gb|AAX27274.2| SJCHGC03417 protein [Schistosoma japonicum]
          Length = 228

 Score =  191 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 58/206 (28%), Positives = 101/206 (49%), Gaps = 17/206 (8%)

Query: 280 AHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGF 339
              +   + P +HLP QSGS  +L++M R +T   Y +++  IR + P+++++SDFI GF
Sbjct: 1   LISERKNICPNIHLPAQSGSSVVLENMRRGYTRQAYMELVATIREIIPNVSLTSDFIAGF 60

Query: 340 PGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKL 398
            GET++D   T++L++++GY+  + F YS R  T    ++ + V   VK  R   L    
Sbjct: 61  CGETEEDHSQTLELIERVGYSFCYCFPYSMREKTFAYHHLTDDVPAEVKRRRFNELLVLS 120

Query: 399 REQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNSKN------------- 444
           R + + FN   +G +  VL E   +    ++ GR+     V+ + +              
Sbjct: 121 RNKSLEFNRKQIGTVQLVLAEGPSRRSTSQVFGRNDCNIKVIFDQEVTLPSTTANNKSSR 180

Query: 445 --HNIGDIIKVRITDVKISTLYGELV 468
                GD + V+I D    TL G  +
Sbjct: 181 ILVKPGDYVVVKIVDATSQTLRGTPL 206


>gi|330903345|gb|EGH33917.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Pseudomonas
           syringae pv. japonica str. M301072PT]
          Length = 169

 Score =  188 bits (478), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 92/169 (54%), Positives = 123/169 (72%)

Query: 175 GVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA 234
           G +A++++ EGC K+CTFCVVPYTRG E+SR    V+ E   L +NGV E+TLLGQNVN 
Sbjct: 1   GPSAYVSVMEGCSKYCTFCVVPYTRGEEVSRPFDDVLSEVIHLAENGVREVTLLGQNVNG 60

Query: 235 WRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP 294
           +RG   DG     +DL+  ++ + G+ R+RYTTSHP + SD LI+AH ++  L+ +LHLP
Sbjct: 61  YRGTTHDGRVADLADLIRVVAAVDGIDRIRYTTSHPLEFSDSLIQAHAEVPELVKHLHLP 120

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGET 343
           VQSGSDRIL +M R HT  EY+  + ++R+  P I+ISSDFIVGFPGET
Sbjct: 121 VQSGSDRILAAMKRNHTTLEYKSRLRKLRAAVPGISISSDFIVGFPGET 169


>gi|237756406|ref|ZP_04584949.1| conserved hypothetical protein [Sulfurihydrogenibium yellowstonense
           SS-5]
 gi|237691441|gb|EEP60506.1| conserved hypothetical protein [Sulfurihydrogenibium yellowstonense
           SS-5]
          Length = 179

 Score =  187 bits (476), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 65/177 (36%), Positives = 107/177 (60%), Gaps = 1/177 (0%)

Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351
           HLP+Q+GSDRIL++M+R +T  EY Q I+ ++   P+IA+S+D IVGFPGET +D+  T+
Sbjct: 1   HLPIQAGSDRILQAMDRGYTQKEYLQKIELLKKYIPNIALSTDIIVGFPGETYEDYLETV 60

Query: 352 DLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVG 411
            ++ ++ Y Q F+FKYSPR GTP +++         ++RL  L    ++     N     
Sbjct: 61  KVIKEVEYDQVFAFKYSPRPGTPAADLPMTESPEELSKRLNDLINLQKDITFKKNLGYQD 120

Query: 412 QIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           +I+E+L+E+  +E  KLVGR+   + V        +G ++ V+I  V   +L G ++
Sbjct: 121 KIVEILVEEINQE-NKLVGRTRTNKLVYAEGSPEYLGKLVNVKIEKVNRFSLEGSII 176


>gi|313142775|ref|ZP_07804968.1| conserved hypothetical protein [Helicobacter canadensis MIT
           98-5491]
 gi|313131806|gb|EFR49423.1| conserved hypothetical protein [Helicobacter canadensis MIT
           98-5491]
          Length = 181

 Score =  187 bits (475), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 59/181 (32%), Positives = 108/181 (59%), Gaps = 5/181 (2%)

Query: 293 LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352
           +P+QSGS +IL+ M R ++   +   + ++R++ PD++I +D IVGFP E+++DF  T+D
Sbjct: 1   MPLQSGSTKILQKMKRGYSKEWFLDRVAKMRALIPDLSIGTDIIVGFPTESEEDFLDTLD 60

Query: 353 LVDKIGYAQAFSFKYSPRLGTPGSNMLEQ-----VDENVKAERLLCLQKKLREQQVSFND 407
           +++K+ +   +SF YS R  T  +  L+      +DE +   RL+ L+ + +E     N 
Sbjct: 61  VLEKVRFDTLYSFIYSTRPHTQAATWLDNGEIQLLDEEIAKNRLMILKDRHKEILAQENA 120

Query: 408 ACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
             +G+I  VL E + +E   L GRS   + + + +  + IG+I  V+I+++K + L GEL
Sbjct: 121 KQLGKIHPVLFESYDEENFLLEGRSDTNKLIRVKAGRNLIGEICNVKISEIKGAQLIGEL 180

Query: 468 V 468
           +
Sbjct: 181 L 181


>gi|268609251|ref|ZP_06142978.1| RNA modification enzyme, MiaB family protein [Ruminococcus
           flavefaciens FD-1]
          Length = 262

 Score =  186 bits (473), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 68/271 (25%), Positives = 124/271 (45%), Gaps = 14/271 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R F  ++GC++N Y++  M+ +F  +G+E + S + AD +V+N+C +             
Sbjct: 3   RVFFITFGCKVNHYETECMKSLFRERGFEILRSQEGADAVVINSCTVTSSGDS------- 55

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R+            D ++ + GC  QA  +E   +    +++VG +    +P L+E    
Sbjct: 56  RVLAALRKARAALPDAVIALTGCYPQASPDE-AAKLTDADIIVGTKDRSGIPALVEECLA 114

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            +  + +            IV   ++      AF+ IQ+GCD+FC++C++P+ RG   S+
Sbjct: 115 DRHRIVSISPYIKGEPFEPIVCSRFD--DNTRAFVKIQDGCDQFCSYCMIPFARGRCRSK 172

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            L  V  E   +  NG  EI L G N+ A+ G+         +D +   S   G+ R+R 
Sbjct: 173 PLEIVRQEIADIAANGKKEIVLTGINL-AFYGREF---GYDMADAVKVCSGTGGIERIRL 228

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQ 296
            +  P  MS+ ++     +    P  HL +Q
Sbjct: 229 GSLEPEMMSEDMLMRLAAIPQFCPQFHLSLQ 259


>gi|32480090|emb|CAE01708.1| OSJNBb0086G13.6 [Oryza sativa Japonica Group]
          Length = 558

 Score =  186 bits (472), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 82/431 (19%), Positives = 156/431 (36%), Gaps = 75/431 (17%)

Query: 38  VYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKE 97
             DS  M     + GY      + ADL ++NTC ++  +   + + + + ++        
Sbjct: 58  QSDSEYMSGQLSAFGYAITEEPEGADLWLINTCTVKNPSQSAMTTLISKCKSANKP---- 113

Query: 98  GGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVE 157
                +VVAGCV Q   +  L+    ++ V+G Q   R+ E++E    G  V        
Sbjct: 114 -----LVVAGCVPQGSRD--LKELEGIS-VIGVQQIDRVVEVVEETLKGHEVRLLSRKT- 164

Query: 158 DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKL 217
                L  +D    RK      L I  GC   CT+C   + RG   S ++  +VD  + +
Sbjct: 165 -----LPSLDLPKVRKNKFIEILPINVGCLGACTYCKTKHARGHLGSYTIESLVDRVKIV 219

Query: 218 IDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCL 277
           +  GV EI L  ++  A+           ++            +   YT S  R + D L
Sbjct: 220 VSEGVREIWLSSEDTGAYVFAPGPDLFHNYTSQA---------MNREYTVSEFRRVVDTL 270

Query: 278 IKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIV 337
            +               +Q  +D I        T  ++ Q ++ ++              
Sbjct: 271 CELV-----------PGMQIATDII--CGFPGETDEDFSQTVNLVKQYL----------- 306

Query: 338 GFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKK 397
            FP               ++  +Q +    +P      + M ++V      +R   L   
Sbjct: 307 -FP---------------QVHISQFYPRPGTP-----AARM-KKVPSVEVKKRSRELTSV 344

Query: 398 LREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITD 457
              +  S      G++  + I +   +   LVG +     V++ + +  +G    V+IT 
Sbjct: 345 F--ESFSPYQGMEGKVERIWITEIATDGVHLVGHTKGYIQVLVIAPDSMLGTSADVKITS 402

Query: 458 VKISTLYGELV 468
           V   +++GE++
Sbjct: 403 VGRWSVFGEVI 413


>gi|265985466|ref|ZP_06098201.1| conserved hypothetical protein [Brucella sp. 83/13]
 gi|264664058|gb|EEZ34319.1| conserved hypothetical protein [Brucella sp. 83/13]
          Length = 266

 Score =  183 bits (464), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 77/278 (27%), Positives = 118/278 (42%), Gaps = 33/278 (11%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           R    S GC   + DS R+     S+GYE     D ADL+++NTC   + A ++    + 
Sbjct: 5   RVSFVSLGCPKALVDSERIITGLRSEGYEISRKHDGADLVIVNTCGFLDSARDESLEAIS 64

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                         +  V+V GC+  AE + I  R P V  + GPQ Y  +   +     
Sbjct: 65  LA---------LNENGKVIVTGCLG-AEPDVIRERHPNVLAITGPQAYESVMNAVHEVAP 114

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                       D F  L +   G        A+L I EGC   C+FC++P  RG  +SR
Sbjct: 115 ---------PAHDPFVDL-VPPQGVKLTPRHYAYLKISEGCSNRCSFCIIPALRGDLVSR 164

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE---------KCTFSDLLYSLSE 256
            +++V+ EA KL+   V EI ++ Q+ +A  G  +  +         +  F DL   L E
Sbjct: 165 PINEVLREAEKLVQADVKEILVISQDTSA-YGLDIKYQEAMWQDRTVRTKFLDLSRELGE 223

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP 294
           +   VR+ Y   +P       + A G    ++PYL  P
Sbjct: 224 MGVWVRMHYVYPYPHVDEVIPLMAEG---KILPYLIFP 258


>gi|149924340|ref|ZP_01912708.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Plesiocystis
           pacifica SIR-1]
 gi|149814778|gb|EDM74349.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Plesiocystis
           pacifica SIR-1]
          Length = 251

 Score =  181 bits (459), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 55/248 (22%), Positives = 99/248 (39%), Gaps = 11/248 (4%)

Query: 1   MGLFIKLIGVAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD 60
           M + + ++G     S+ V     P++ +  S GC  N  D+  M  +  + G++ V+   
Sbjct: 1   MTVNLPVVGNGPQPSEPVSG---PKKVYFVSLGCPKNQVDTEVMLGVVQANGHQLVDDPS 57

Query: 61  DADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGG--DLLVVVAGCVAQAEGEEIL 118
           +AD +V+NTC   + A ++    +  +  +K     +    D  +VVAGC++Q    E+ 
Sbjct: 58  EADTLVVNTCGFIDAAKQESIDTILELAAVKAEAAGDASVVDKRLVVAGCLSQRYPTELA 117

Query: 119 RRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTA 178
              P V+  +G      + ++L  A     V + +               G     G + 
Sbjct: 118 AEMPEVDHFLGSADMLGMAKVLGGAAGRMGVSELNRRAWLYDHSTPRQVVGV----GHSN 173

Query: 179 FLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK 238
           ++ I EGCD+ C FC++P  RG + SR +  +V E                       G 
Sbjct: 174 YVKIAEGCDRPCGFCIIPKLRGPQRSRPVFDIVQEVHGSSSK--APARSASSPRTDHYGT 231

Query: 239 GLDGEKCT 246
              G   T
Sbjct: 232 DFPGRGMT 239


>gi|220928478|ref|YP_002505387.1| radical SAM protein [Clostridium cellulolyticum H10]
 gi|219998806|gb|ACL75407.1| Radical SAM domain protein [Clostridium cellulolyticum H10]
          Length = 416

 Score =  180 bits (457), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 81/380 (21%), Positives = 160/380 (42%), Gaps = 32/380 (8%)

Query: 23  VPQRF-FVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++   + +  C     D +++E    + GYE V     AD IV  TC    + A+  +
Sbjct: 1   MSKKVRLICNLNCSRRQMDMVKLESYLSANGYEVVEDEKQADQIVYTTCGFINETAQVAF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           + + R+++L            ++V GC+   + E   +       VV     Y+  +   
Sbjct: 61  NEIERLKSLPAE---------LIVTGCLPDTDSETFNKIHSG--KVVRNTELYKFDD--- 106

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
                  V   D   +D  +   +  G     +G    + +  GC + C++C   +  G 
Sbjct: 107 -------VFGGDTKFQDIPDAHDMPWG-----KGEYFCVEVSRGCPENCSYCATKWAVGK 154

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
             S+ + + ++E  +   +   ++ + G NV A  G  +   K TF  L+ +L       
Sbjct: 155 MKSKPIQKCIEEIEEFKKSTFSKVVINGDNVGA-YGLDI---KETFGTLVSALPIEDEKY 210

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVL-MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
           +    + HPR +          +       L   +Q+G++R+L+ M R+    + ++   
Sbjct: 211 KAYIDSLHPRWLLLYYDAVLAAISKNRFGMLVSAIQAGNERVLELMRRKADMKKLKEAFI 270

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
            I+   P+I + ++ IVGFP E++ DF  ++D +          F +SP+ GT  + +  
Sbjct: 271 EIKQKSPEIVLGTEVIVGFPTESESDFIESVDFILSTKLDWGNIFAFSPKKGTEAAAIKG 330

Query: 381 QVDENVKAERLLCLQKKLRE 400
           QV+E  K  R+  L +KL+E
Sbjct: 331 QVEEAEKIRRINYLVEKLKE 350


>gi|70939009|ref|XP_740104.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56517584|emb|CAH81443.1| conserved hypothetical protein [Plasmodium chabaudi chabaudi]
          Length = 284

 Score =  180 bits (456), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 63/289 (21%), Positives = 125/289 (43%), Gaps = 13/289 (4%)

Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCT 246
             CT+C   + RG   S ++  +V   + +     + EI L  ++  A  G  L+     
Sbjct: 1   GNCTYCNTKFARGNLSSYNIKDIVSRIKHVYTQDNIKEIWLTSEDSGA-YGIDLNTNIVN 59

Query: 247 FS-DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
              ++L  + +   ++R+  T           I        +  ++H+PVQSGS+ +LK 
Sbjct: 60  LLKEILDYVQDTDIMIRIGMTNPPYILKHVKDICKLLKHKNMYEFIHIPVQSGSNNVLKD 119

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           MNR +   ++  ++D +R   P++ I++D I GFP E+++D   T++LV    +      
Sbjct: 120 MNREYKIEDFIYLVDNLRKYVPNMTIATDIICGFPYESENDHLETVNLVKTYKFPILNIS 179

Query: 366 KYSPRLGTPGSNMLEQVDENVKAERLLCLQK--KLREQQVSFNDACVGQIIEVLIEKHGK 423
           ++ PR GT   NM +++D  +  +R   +       +    F       I +VL  +   
Sbjct: 180 QFYPRRGTVAYNM-KKIDTKIVKKRSREVTDAFLSYQNNYEFLQ---DTIQKVLFTEISS 235

Query: 424 EKGKLVGRSPWLQSVVL----NSKNHNIGDIIKVRITDVKISTLYGELV 468
           +   ++G +     V+L    +   + +G     +I       ++ ELV
Sbjct: 236 KSEHIIGHTKQYVKVLLHNNNSENENLLGKFATCKIVSTHKWHVFAELV 284


>gi|260587678|ref|ZP_05853591.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Blautia hansenii DSM
           20583]
 gi|260541943|gb|EEX22512.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Blautia hansenii DSM
           20583]
          Length = 165

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 57/164 (34%), Positives = 94/164 (57%), Gaps = 1/164 (0%)

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           MNRR+   +Y  ++++IR+  PDI++++D IVGFPGET++DF  T+D+V K+ Y  AF+F
Sbjct: 1   MNRRYDKEKYLNLVEKIRTAIPDISLTTDIIVGFPGETEEDFLETVDVVKKVRYDSAFTF 60

Query: 366 KYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKE 424
            YS R GTP + M  QV E V  +R   L + ++      +    G+++EVL+E+ + ++
Sbjct: 61  IYSKRTGTPAAVMENQVSEGVVKDRFNRLLETVQSIGREMSARDTGKVMEVLVEEQNSQD 120

Query: 425 KGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           K  + GR      V        IG + +VR+ + +     G  V
Sbjct: 121 KHLMTGRLSNNLLVHFEGDTSLIGQLCQVRLDECRGFYYMGTKV 164


>gi|207092699|ref|ZP_03240486.1| hypothetical protein HpylHP_07546 [Helicobacter pylori
           HPKX_438_AG0C1]
          Length = 322

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 66/278 (23%), Positives = 125/278 (44%), Gaps = 11/278 (3%)

Query: 174 RGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVN 233
             V A++ I EGC++ C+FC +P  +G   SR L  ++ E   L   G  ++T + Q+ +
Sbjct: 22  SSVHAYVKISEGCNQKCSFCAIPSFKGKLQSRELDSILKEVEDLALKGYTDMTFIAQDSS 81

Query: 234 AWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHL 293
           ++      G+K     L+ ++ + + L   R    +P   +  LI A  +  +   Y  +
Sbjct: 82  SFLYD--KGQKDGLIQLIRAIDKQQALKSARILYLYPSSTTLELIGAIENSPIFQNYFDM 139

Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
           P+Q  SD +LK M R  +   + +++D ++ V+    I S  IVG P E + +F      
Sbjct: 140 PIQHISDSMLKKMRRNSSQAHHLKLLDAMKKVKESF-IRSTIIVGHPEENEGEFEELSAF 198

Query: 354 VDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQI 413
           +D+  + +   F +S    T   ++ E+V +     R+  L K   + Q     A + + 
Sbjct: 199 LDEFQFDRLNIFAFSAEENTHAYSL-EKVPKKTINARIKALNKIALKHQNHSFKALLNKP 257

Query: 414 IEVLIEKHGKEKGKLV-GR----SPWLQSVVLNSKNHN 446
           I+ L+E   KE       R    +P +   +L + +  
Sbjct: 258 IKALVE--NKEGEYFYKARDLRWAPEVDGEILINDSEL 293


>gi|213585311|ref|ZP_03367137.1| hypothetical protein SentesTyph_30295 [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
          Length = 221

 Score =  177 bits (448), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 59/210 (28%), Positives = 103/210 (49%), Gaps = 19/210 (9%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC  N+ DS R+     ++GY+ V   DDAD++++NTC   + A ++    +G
Sbjct: 9   KIGFVSLGCPKNLVDSERILTELRTEGYDVVPHYDDADMVIVNTCGFIDSAVQESLEAIG 68

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                         +  V+V GC+  A+ ++I    P V  + GP +Y ++ + +     
Sbjct: 69  EA---------LNENGKVIVTGCLG-AKEDQIREVHPKVLEITGPHSYEQVLQHVHHY-- 116

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                       + F  L + + G        A+L I EGC+  CTFC++P  RG  +SR
Sbjct: 117 ------VPKPKHNPFLSL-VPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGDLVSR 169

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAW 235
            +  V+ EA++L+D GV EI ++ Q+ +A+
Sbjct: 170 PIGDVLSEAKRLVDAGVKEILVISQDTSAY 199


>gi|261339141|ref|ZP_05966999.1| hypothetical protein ENTCAN_05362 [Enterobacter cancerogenus ATCC
           35316]
 gi|288318984|gb|EFC57922.1| RNA modification enzyme, MiaB-family [Enterobacter cancerogenus
           ATCC 35316]
          Length = 167

 Score =  177 bits (448), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 51/167 (30%), Positives = 85/167 (50%), Gaps = 4/167 (2%)

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           M R  +       I + R + PD+ + S FIVGFPGET++DF+  +D + +    +   F
Sbjct: 1   MKRPGSVDRQLARIKQWREICPDLTLRSTFIVGFPGETEEDFQMLLDFLKEARLDRVGCF 60

Query: 366 KYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK 425
           KYSP  G   + + +QV E VK ER     +  ++         VG+ + V+I++  +E 
Sbjct: 61  KYSPVDGATANELADQVPEEVKEERWNRFMQLQQQISAERLQEKVGREVLVIIDEVDEEG 120

Query: 426 --GKLVGRSPWLQS-VVLNSK-NHNIGDIIKVRITDVKISTLYGELV 468
             G+ +  +P +   V LN + N   GDII+V++ +     L+G  V
Sbjct: 121 AIGRSMADAPEIDGAVYLNGETNVKPGDIIRVKVENADEYDLWGSRV 167


>gi|330878024|gb|EGH12173.1| ribosomal protein S12 methylthiotransferase [Pseudomonas syringae
           pv. glycinea str. race 4]
          Length = 197

 Score =  177 bits (448), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 56/190 (29%), Positives = 89/190 (46%), Gaps = 7/190 (3%)

Query: 286 VLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDD 345
            ++PYL +P Q  S +ILK M R     +    I   R   PD+ I S FIVGFPGET++
Sbjct: 8   KILPYLDIPFQHASPKILKLMKRPAFEDKTLARIKNWREQCPDLIIRSTFIVGFPGETEE 67

Query: 346 DFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ-VDENVKAERLLCLQKKLREQQVS 404
           DF+  +D + +    +   F+YSP  G P + +    V ++VK +R        +    +
Sbjct: 68  DFQYLLDWLTEAQLDRVGCFQYSPVEGAPANLLDAAIVPDDVKQDRWDRFMAHQQAISAA 127

Query: 405 FNDACVGQIIEVLIEKHGKEK--GKLVGRSPWLQSVVL----NSKNHNIGDIIKVRITDV 458
                +G+ IEVLI++       G+    +P +   V           +GD I  R+TD 
Sbjct: 128 RLQMKIGKEIEVLIDEVDDRGAVGRCFFDAPEIDGNVFIGLEEGSTVQLGDKIMCRVTDA 187

Query: 459 KISTLYGELV 468
               L+ E++
Sbjct: 188 DEYDLWAEML 197


>gi|156337861|ref|XP_001619903.1| hypothetical protein NEMVEDRAFT_v1g149881 [Nematostella vectensis]
 gi|156203943|gb|EDO27803.1| predicted protein [Nematostella vectensis]
          Length = 202

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 64/204 (31%), Positives = 107/204 (52%), Gaps = 7/204 (3%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C   CT+C   + RG   S    ++V+ A++  + GV E+ L  ++  A  GK +     
Sbjct: 1   CLNQCTYCKTKHARGDLGSYPPEEIVNRAKQAFNEGVVEMWLTSEDTGA-YGKDI---GV 56

Query: 246 TFSDLLYSLSE-IKGLVRLRYTTSHPRDMSDCL--IKAHGDLDVLMPYLHLPVQSGSDRI 302
           T  +LL+ L + I    R+R   ++P  + + L  +    +   +  +LH+PVQS S  +
Sbjct: 57  TLPELLWQLVKVIPEGGRMRIGMTNPPYILEHLEEMAKILNHPRVYSFLHVPVQSASTNV 116

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           L  M R + A ++  +++ +R   PD+ I++D I GFP ET+DDF+ T+DLV K  +   
Sbjct: 117 LADMKREYIAEDFEHVVNYLRQRVPDLTIATDLICGFPTETEDDFQKTLDLVKKYKFPSL 176

Query: 363 FSFKYSPRLGTPGSNMLEQVDENV 386
           F  ++ PR GTP + M     E V
Sbjct: 177 FINQFYPRPGTPAARMKRLPTEEV 200


>gi|330878023|gb|EGH12172.1| ribosomal protein S12 methylthiotransferase [Pseudomonas syringae
           pv. glycinea str. race 4]
          Length = 215

 Score =  173 bits (439), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 64/219 (29%), Positives = 105/219 (47%), Gaps = 19/219 (8%)

Query: 17  IVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA 76
            V     P+  FV S GC   + DS R+      +GYE V + +DAD++V+NTC   + A
Sbjct: 3   TVTTPSAPKVGFV-SLGCPKALVDSERILTQLRMEGYEVVATYEDADVVVVNTCGFIDTA 61

Query: 77  AEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL 136
             +    +G         IKE G   V+V GC+   +   I    P V  V GPQ Y ++
Sbjct: 62  KAESLEVIGEA-------IKENG--KVIVTGCMG-VDANVIRDVHPSVLSVTGPQQYEQV 111

Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
              +      ++  +    +        +   G        A+L I EGC+  C+FC++P
Sbjct: 112 VNAVHDVVPPRKDHNPLIDL--------VPPQGVKLTPRHYAYLKISEGCNHSCSFCIIP 163

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW 235
             RG  +SR +  V+DEA++L+ +GV E+ ++ Q+ +A+
Sbjct: 164 SMRGKLVSRPVGDVLDEAKRLVKSGVKELLVISQDTSAY 202


>gi|237755858|ref|ZP_04584455.1| hypothetical protein SULYE_0497 [Sulfurihydrogenibium
           yellowstonense SS-5]
 gi|237691994|gb|EEP61005.1| hypothetical protein SULYE_0497 [Sulfurihydrogenibium
           yellowstonense SS-5]
          Length = 253

 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 68/248 (27%), Positives = 122/248 (49%), Gaps = 6/248 (2%)

Query: 213 EARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
           + + L+D G  EI L G  ++ +   G D ++ T  DLL +L +I+ L R+R ++    +
Sbjct: 2   QVKILVDKGFKEIVLTGTQLSQY---GYDHKEGTLYDLLKNLVKIENLYRIRLSSMGINE 58

Query: 273 MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAIS 332
           + D LI      + + P+ H+ +QS  D++L+ M R +T  EY + +++I S RP+ AI 
Sbjct: 59  LDDKLIDFLTSEEKIAPHFHISIQSADDKVLRDMKRNYTVKEYIEKVEKIISKRPETAIG 118

Query: 333 SDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLL 392
           +D I GFP E    F  T+  ++ I +A    F YS R GT      ++V    K ER  
Sbjct: 119 TDIITGFPTEDKTAFLNTVKTINDIPFAYIHVFTYSERDGTTAVKFGDRVHPEEKKERTR 178

Query: 393 CLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIK 452
            L++   ++   F    + + +E LI    +     +G +       + ++   +  IIK
Sbjct: 179 ILREISYQKNYEFRKRFINKDLEFLI--ISERDDYKIGITGNYIHAKIKTEKP-VNTIIK 235

Query: 453 VRITDVKI 460
             +T++  
Sbjct: 236 ANLTEIGK 243


>gi|227872339|ref|ZP_03990693.1| tRNA 2-methylthioadenine synthetase [Oribacterium sinus F0268]
 gi|227841822|gb|EEJ52098.1| tRNA 2-methylthioadenine synthetase [Oribacterium sinus F0268]
          Length = 247

 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 71/213 (33%), Positives = 116/213 (54%), Gaps = 12/213 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +  V   GCQM+  D  +++ +    GY      ++AD+I+  TC +RE A +K+Y  +G
Sbjct: 43  KAMVTVIGCQMSAKDGEKLQGILQEAGYSITEKEEEADVILFTTCTVRENANQKLYGRIG 102

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGE--EILRRSPIVNVVVGPQTYYRLPE-LLER 142
           ++++L     +   DL++ + GC+ Q + E   I R+ P V+++ G    Y+L E LLE 
Sbjct: 103 QLKHL----YQRNKDLIIGITGCMMQEKDEVETIQRKYPYVHLIFGTHNIYKLAEYLLET 158

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
               ++ V+      +  E L        RK    A + I  GC+ FCT+C+VPY RG E
Sbjct: 159 MLSKEKKVELLEDSAEIVENLP-----SKRKYSFRAAVNISFGCNNFCTYCIVPYVRGRE 213

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW 235
            SR+  +++ E   L+ +GV EI LLGQNVN++
Sbjct: 214 KSRNSQEILKECEALVADGVKEIMLLGQNVNSY 246


>gi|302809011|ref|XP_002986199.1| hypothetical protein SELMODRAFT_446559 [Selaginella moellendorffii]
 gi|300146058|gb|EFJ12730.1| hypothetical protein SELMODRAFT_446559 [Selaginella moellendorffii]
          Length = 686

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 80/379 (21%), Positives = 141/379 (37%), Gaps = 62/379 (16%)

Query: 55  RVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG 114
             +S   ADL ++NTC ++                                   +     
Sbjct: 3   ISDSPQRADLWLINTCTVKAPT--------------------------------MGTLIR 30

Query: 115 EEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKF---ERLSIVDGGYN 171
           +      P+V+  +    + R               +T    E +    + L  +D    
Sbjct: 31  KGKAASIPLVDSWMRSSGFKRSRSCQRHRSAVNTAGETLKGHEARLLRRDALPSLDLPKV 90

Query: 172 RKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQN 231
           RK      + I  GC   CT+C   + RG   S ++   V   + ++  G      +G N
Sbjct: 91  RKNKFVEIIPINVGCLGACTYCKTKHARGHLGSYTVDTPVQRLKTVVSEG----RDIGAN 146

Query: 232 VNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL 291
           + A               LL +L  +    R +Y   +    +      +G    +  +L
Sbjct: 147 IPA---------------LLRALVAVLP-HRQKYNAPNLHLTASG---GNGCHPCVYSFL 187

Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351
           H+ VQSG D +L+ M R +T  E+R+I+D +  + P+I I++D I GFPGET +DF   M
Sbjct: 188 HVLVQSGRDSVLEGMKREYTFSEFRKIVDTLTRLVPEIHIATDIICGFPGETSEDFDRIM 247

Query: 352 DLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVG 411
           +L+ +  + Q    ++ PR GTP + M ++V      +R   L      +  +       
Sbjct: 248 ELIRECTFPQVHISQFYPRPGTPAALM-KRVPTLEVKKRSRSLTSLF--ESFTPYAGME- 303

Query: 412 QIIEVLIEKHGKEKGKLVG 430
           +   V +     +   LVG
Sbjct: 304 KTYRVWVTNTAADGIHLVG 322


>gi|86150486|ref|ZP_01068711.1| MiaB-like tRNA modifying enzyme [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|85839081|gb|EAQ56345.1| MiaB-like tRNA modifying enzyme [Campylobacter jejuni subsp. jejuni
           CF93-6]
          Length = 256

 Score =  169 bits (428), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 67/280 (23%), Positives = 129/280 (46%), Gaps = 26/280 (9%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + ++ F K++GC+ N+YD+  ++       YE +N  + A +IV+N+C +   A   + S
Sbjct: 1   MKEKVFFKTFGCRTNIYDTELLKSYVKD--YEIINDENKAQIIVVNSCTVTNGADSGIKS 58

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
           ++  ++            + V++ GC A ++G+E+L +   V  V+G     ++ E L  
Sbjct: 59  YVNTMQK---------KGIKVILTGCGAVSKGKELLDK-KQVFGVLGASNKDKINEFLGA 108

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
                 + + ++  +D              +    AF+ IQEGCD  C++C++P  RG  
Sbjct: 109 KTSFYELGNLNFIDKDIVCEY---------ENHTKAFVKIQEGCDFACSYCIIPSVRGKS 159

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            S     ++ +   L  NG  EI L G N+ ++  K       T   LL  + +I G+ R
Sbjct: 160 RSVDEKALLKQVEILGANGYSEIVLTGTNIGSYGLK----NGTTLGKLLQKMGQILGIKR 215

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
           +R  +  P  + +  ++   D   L  +LH+ +Q  S + 
Sbjct: 216 IRLGSLEPAQLDESFLE-ILDEAWLERHLHIALQHTSXKC 254


>gi|28804570|dbj|BAC57983.1| hypothetical protein [Leptospira interrogans]
          Length = 264

 Score =  168 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 62/274 (22%), Positives = 121/274 (44%), Gaps = 12/274 (4%)

Query: 44  MEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLV 103
           M      +G+   +  +++D   +NTC   + A E+    +     +K           +
Sbjct: 3   MHHSLLEEGFTPASLPEESDFHFINTCTFIQSATEETIQTILSAAQVKKQ-----NHQKL 57

Query: 104 VVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERL 163
           VV GC A+   + I    P V++  G   Y +  ++L            +++ +   ER 
Sbjct: 58  VVVGCFAERYPDNIHSEIPEVDLFFGTGKYSQAGKILREKFPELSPSQLEFN-DSLLERW 116

Query: 164 SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVC 223
            +     N  +   A++ + +GC++ C+FC++P  RG  +   L  ++ +  + I  G  
Sbjct: 117 KLSSKIENYSKPY-AYVKVSDGCNRGCSFCIIPSFRGKFVESPLDDILRDTNRAIRAGAK 175

Query: 224 EITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGD 283
           EI L+ Q+   + G+  +       D++  ++EI  L  LR    +P   ++ LI+  G+
Sbjct: 176 EICLVSQDT-VYYGRDSE----ILLDMVRKVAEIDSLEILRLLYLYPDKKTEKLIRLMGE 230

Query: 284 LDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
              + PYL  P+Q  S +ILK MNR   +  ++ 
Sbjct: 231 TSKIAPYLESPLQHVSSKILKVMNRTGESSYFKD 264


>gi|188529339|gb|ACD62415.1| CDKAL1-like protein [Drosophila silvestris]
          Length = 248

 Score =  168 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 56/185 (30%), Positives = 96/185 (51%), Gaps = 3/185 (1%)

Query: 284 LDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGET 343
              +  +LH+PVQSGSD +L  M R +   ++  ++D +RS  P + I++D I GFP ET
Sbjct: 13  HPRVYAFLHVPVQSGSDSVLGEMKREYCRKDFEHVVDLLRSRVPGLTIATDIICGFPTET 72

Query: 344 DDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQV 403
           + DF  TM L +K  +   F  ++ PR GTP + + E++  N+  +R   L         
Sbjct: 73  EQDFEETMTLCEKYQFPILFINQFFPRPGTPAAKI-ERIPANLVKKRTKRLTDLFY--SY 129

Query: 404 SFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTL 463
                  GQ+  VL+ +   +K   VG +   + V+L  + + +G  ++VRIT     ++
Sbjct: 130 EPYAEREGQLYTVLVTEISHDKLHYVGHNKSYEQVLLPMRKNLLGTRVRVRITSSSKFSM 189

Query: 464 YGELV 468
            GE++
Sbjct: 190 MGEIL 194


>gi|298704898|emb|CBJ34118.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 193

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 77/198 (38%), Positives = 111/198 (56%), Gaps = 10/198 (5%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           +++ GCQMNV DS RME      G ++     +A + VLNTC IR+ A +KVYS++G   
Sbjct: 1   METMGCQMNVADSERMEGQMADLGIQKTEDKTEASVFVLNTCSIRDHAEQKVYSYVGPYA 60

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
             K      G ++ +VVAGCVAQ EGE++LRR P +++V+GPQ   RL +LLE    G +
Sbjct: 61  IRKQK----GENIAIVVAGCVAQQEGEKLLRRVPEIDLVMGPQYANRLGDLLEDVMNGNQ 116

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           +V TD S+  +            R     A++ I  GC++ CT+CVVP  RG+E SR   
Sbjct: 117 IVATDPSLIMEDVSKP------RRGSSTCAWVNIIYGCNEHCTYCVVPGVRGVEQSRPKE 170

Query: 209 QVVDEARKLIDNGVCEIT 226
            +  E  +L   G  E+ 
Sbjct: 171 SIRQEMVELAAAGYREVR 188


>gi|326200994|ref|ZP_08190866.1| Radical SAM domain protein [Clostridium papyrosolvens DSM 2782]
 gi|325988562|gb|EGD49386.1| Radical SAM domain protein [Clostridium papyrosolvens DSM 2782]
          Length = 404

 Score =  166 bits (421), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 74/364 (20%), Positives = 139/364 (38%), Gaps = 25/364 (6%)

Query: 43  RMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLL 102
           R+E  F   G++ V ++D ADL V+  C   +   ++V + L  I       +K+G    
Sbjct: 22  RLEKYFILNGWQSVKNLD-ADLYVIVACGAVDFVHDRVKNALNDI------SLKKGNFNS 74

Query: 103 VVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFER 162
            V+ GC       ++       ++  G    Y    +L+     +   ++          
Sbjct: 75  TVIMGCQPVTYEGKLK------SIFDGKMINYGQESMLDELIGAEYTFESVSIPN----- 123

Query: 163 LSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGV 222
             I +   NRK  +   + I  GC   CT+CV+    G   S+ + ++ +E +  +  G 
Sbjct: 124 --IFNSPVNRKNELFTII-ISTGCMMKCTYCVIKKAHGYITSKPVDEICEEFKHAVRLGY 180

Query: 223 CEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHG 282
             I + G +  +  G  ++         L ++              +     D  I+  G
Sbjct: 181 KNIAIGGTDT-SVYGHDINTNFIALIKKLRAIDSTVKFYVDNLHPHNLLKYRDDFIELAG 239

Query: 283 DLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGE 342
                  YLH+  Q   D +L  M R     +   +I  ++ V P + + +DFI  FPGE
Sbjct: 240 Q--NAFSYLHIAFQHIDDVMLDRMGRTAHFEQVYAMIGEMKKVCPKLILFTDFICAFPGE 297

Query: 343 TDDDFRATMDLVDK-IGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQ 401
           T++ +   +D V K   +   +   Y    G    N  +++ ++VK ER   L      +
Sbjct: 298 TEEQYEKLLDFVKKDTIFDYYYIHDYCDIDGAVSYNYTDKISDDVKTERCQKLMIAFERR 357

Query: 402 QVSF 405
           +   
Sbjct: 358 KDEK 361


>gi|119596727|gb|EAW76321.1| CDK5 regulatory subunit associated protein 1, isoform CRA_d [Homo
           sapiens]
          Length = 222

 Score =  166 bits (420), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 57/207 (27%), Positives = 85/207 (41%), Gaps = 21/207 (10%)

Query: 283 DLDVLMPYLHLPVQSGSDRILKSM-------NRRHTAYEYRQIIDRIRSVRPDIAISSDF 335
             D +  ++ L   S   + L            R++   Y +++  IR   P +++SSDF
Sbjct: 4   RSDYMWKFIVLSFYSIHLKRLDLCRPFPFVLYCRYSREAYVELVHHIRESIPGVSLSSDF 63

Query: 336 IVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQVDENVKAERLLCL 394
           I GF GET++D   T+ L+ ++ Y   F F YS R  T     + + V E VK  RL  L
Sbjct: 64  IAGFCGETEEDHVQTVSLLREVQYNMGFLFAYSMRQKTRAYHRLKDDVPEEVKLRRLEEL 123

Query: 395 QKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVLNSKN--------- 444
               RE+    N   VG    VL+E   K     L GR+     V+              
Sbjct: 124 ITIFREEATKANQTSVGCTQLVLVEGLSKRSATDLCGRNDGNLKVIFPDAEMEDVNNPGL 183

Query: 445 ---HNIGDIIKVRITDVKISTLYGELV 468
                 GD + V+IT     TL G ++
Sbjct: 184 RVRAQPGDYVLVKITSASSQTLRGHVL 210


>gi|315928738|gb|EFV08014.1| uncharacterized protein family UPF0004 family protein
           [Campylobacter jejuni subsp. jejuni 305]
          Length = 255

 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 65/273 (23%), Positives = 126/273 (46%), Gaps = 26/273 (9%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F K++GC+ N+YD+  ++       YE +N  + A +IV+N+C +   A   + S++
Sbjct: 8   RKSFFKTFGCRTNIYDTELLKSYVKD--YEIINDENKAQIIVVNSCTVTNGADSGIKSYV 65

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             ++            + V++ GC A ++G+E+L +   V  V+G     ++ E L    
Sbjct: 66  NTMQK---------KGIKVILTGCGAVSKGKELLDK-KQVFGVLGASNKDKINEFLGAKT 115

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
               + + ++  +D              +    AF+ IQEGCD  C++C++P  RG   S
Sbjct: 116 SFYELGNLNFIDKDIVCEY---------ENHTKAFVKIQEGCDFACSYCIIPSVRGKSRS 166

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
                ++ +   L  NG  EI L G N+ ++  K       +   LL  + +I G+ R+R
Sbjct: 167 VDEKALLKQVEILGANGYSEIVLTGTNIGSYGLK----NGTSLGKLLQKMGQISGIKRIR 222

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQS 297
             +  P  + +  ++   D   L  +LH+ +Q 
Sbjct: 223 LGSLEPAQIDESFLE-ILDETWLERHLHIALQH 254


>gi|147677218|ref|YP_001211433.1| hypothetical protein PTH_0883 [Pelotomaculum thermopropionicum SI]
 gi|146273315|dbj|BAF59064.1| hypothetical protein [Pelotomaculum thermopropionicum SI]
          Length = 165

 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 49/165 (29%), Positives = 89/165 (53%), Gaps = 1/165 (0%)

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           M RR+TA+EY ++ + +R   P + +++D +VGFPGET ++F  T   ++K+ +++   F
Sbjct: 1   MGRRYTAWEYYRLAEVLRENLPGLGLTTDVMVGFPGETGENFANTCRFIEKVSFSRLHVF 60

Query: 366 KYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKH-GKE 424
           K+SPR GTP +   +QV+  VK ER   L +   +    F    +G  ++VL E+   + 
Sbjct: 61  KFSPRRGTPAAGFGDQVEPPVKEERSRALLELGEKLSARFASLHIGLELDVLAEQPFQER 120

Query: 425 KGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
            G   G +     VV    +   G I++V+   ++   L G +++
Sbjct: 121 SGLYEGLTGNYLRVVFPGNDELKGKIVRVKAEKLRDGLLEGSIII 165


>gi|221124406|ref|XP_002163891.1| PREDICTED: similar to Y92H12BL.1 [Hydra magnipapillata]
          Length = 353

 Score =  163 bits (413), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 70/316 (22%), Positives = 120/316 (37%), Gaps = 75/316 (23%)

Query: 173 KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNV 232
                A+L I EGC+  CTFC++P  RG  +SR +  V+ EAR L + GV E+ ++ Q+ 
Sbjct: 87  TPRHYAYLKISEGCNHRCTFCIIPSMRGDLVSRPIGDVLSEARALFEGGVKELLVISQDT 146

Query: 233 NA------WRGKGLDGE--KCTFSDLLYSLSEI----KGLVRLRYTTSHPRDMSDCLIKA 280
           +A      +R    DG+  K    +L+ +L E+       VRL Y   +P       + A
Sbjct: 147 SAYGVDVKYRTGFWDGKPVKTRMLELVQALGELAEPYGAWVRLHYVYPYPSVDEIVPLMA 206

Query: 281 HGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFP 340
            G    ++PYL +P+Q     +L+ M R  +  +  + +    +       ++D     P
Sbjct: 207 TG---RVLPYLDVPLQHSHPDVLRRMKRPASGEKNLERLQXXXA------TANDLPGMLP 257

Query: 341 GETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLRE 400
            E                                           V+ ER     +   E
Sbjct: 258 VE-------------------------------------------VREERRARFMQVAEE 274

Query: 401 QQVSFNDACVGQIIEVLIEKH---GKEK--GKLVGRSPWLQSVV------LNSKNHNIGD 449
              +     VG +++VL++     G++   G+    +P +  VV        SK   +G+
Sbjct: 275 VSAARLQRRVGSVMQVLVDSAPALGRKGGVGRSYADAPEIDGVVRLLPPEKISKTLKVGE 334

Query: 450 IIKVRITDVKISTLYG 465
             K RI   +   L  
Sbjct: 335 FTKARIVSAQGHDLVA 350



 Score = 77.3 bits (189), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 35/75 (46%), Gaps = 1/75 (1%)

Query: 13 MVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHI 72
          +++        P+  FV S GC   + DS  +     ++GY+   +   ADL+++NTC  
Sbjct: 4  ILTPTQTAQAAPKVGFV-SLGCPKALTDSELILTQLSAEGYQTSKTFQGADLVIVNTCGF 62

Query: 73 REKAAEKVYSFLGRI 87
           + A ++    +G  
Sbjct: 63 IDDAVKESLDTIGEA 77


>gi|156326520|ref|XP_001618638.1| hypothetical protein NEMVEDRAFT_v1g224945 [Nematostella vectensis]
 gi|156199651|gb|EDO26538.1| predicted protein [Nematostella vectensis]
          Length = 214

 Score =  163 bits (413), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 54/212 (25%), Positives = 100/212 (47%), Gaps = 12/212 (5%)

Query: 24  PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
            ++    + GC++N  ++  +   F  +G+ERV+  + AD+ V+NTC + E A +     
Sbjct: 4   KKKVAFYTLGCKLNFSETSTIARNFQDEGFERVDFEEVADMYVINTCSVTENADK----- 58

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
             + + +    +K      V   GC AQ + EE+      V++V+G    +++ + +   
Sbjct: 59  --QFKQIVKKAMKLNDKAFVAAVGCYAQLKPEELAAVD-GVDLVLGATEKFKITDYINDL 115

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
                  D       + E      G Y+      AFL +Q+GCD  CT+C +P  RGI  
Sbjct: 116 AKN----DMGEVHSCEIEDADFYVGSYSIGDRTRAFLKVQDGCDYKCTYCTIPLARGISR 171

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAW 235
           S ++  V+  A+++ + G+ EI L G N+  +
Sbjct: 172 SDTMEGVLKNAKEISEKGIKEIVLTGVNIGDY 203


>gi|56205136|emb|CAI19389.1| CDK5 regulatory subunit associated protein 1 [Homo sapiens]
          Length = 255

 Score =  162 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 52/173 (30%), Positives = 76/173 (43%), Gaps = 14/173 (8%)

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369
           ++   Y +++  IR   P +++SSDFI GF GET++D   T+ L+ ++ Y   F F YS 
Sbjct: 71  YSREAYVELVHHIRESIPGVSLSSDFIAGFCGETEEDHVQTVSLLREVQYNMGFLFAYSM 130

Query: 370 RLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK- 427
           R  T     + + V E VK  RL  L    RE+    N   VG    VL+E   K     
Sbjct: 131 RQKTRAYHRLKDDVPEEVKLRRLEELITIFREEATKANQTSVGCTQLVLVEGLSKRSATD 190

Query: 428 LVGRSPWLQSVVLNSKN------------HNIGDIIKVRITDVKISTLYGELV 468
           L GR+     V+                    GD + V+IT     TL G ++
Sbjct: 191 LCGRNDGNLKVIFPDAEMEDVNNPGLRVRAQPGDYVLVKITSASSQTLRGHVL 243



 Score = 47.6 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 34/70 (48%)

Query: 108 CVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVD 167
           C+A+   EEIL R  +V+++ GP  Y  LP LL  A  G++  +   S+++ +  +  V 
Sbjct: 1   CMAERLKEEILNREKMVDILAGPDAYRDLPRLLAVAESGQQAANVLLSLDETYADVMPVQ 60

Query: 168 GGYNRKRGVT 177
              +      
Sbjct: 61  TSASATSAFV 70


>gi|254448826|ref|ZP_05062282.1| 2-methylthioadenine synthetase [gamma proteobacterium HTCC5015]
 gi|198261516|gb|EDY85805.1| 2-methylthioadenine synthetase [gamma proteobacterium HTCC5015]
          Length = 167

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 47/167 (28%), Positives = 77/167 (46%), Gaps = 4/167 (2%)

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           M R        + I+  R   PD+ + S FIVGFPGE++D+F   +D +++    +   F
Sbjct: 1   MRRPAATENTLERIESWRKQCPDLVLRSTFIVGFPGESEDEFEELLDFLERAQLDRVGCF 60

Query: 366 KYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK 425
           KYSP  G   + + + VDE++K +R     +K +E         VGQ   VLI++   E 
Sbjct: 61  KYSPVEGASANALPDPVDEDIKEQRYQRFMQKQQEISAQKLQRRVGQRCTVLIDEIADEG 120

Query: 426 --GKLVGRSPWLQS-VVLNSKNHN-IGDIIKVRITDVKISTLYGELV 468
             G+    +P +   V ++   H   G  + V I +      +  LV
Sbjct: 121 AVGRAASDAPDIDGLVFIDGATHLTPGAWVDVEIEEADEYDTWAHLV 167


>gi|225629588|ref|ZP_03787609.1| MiaB-like tRNA modifying enzyme [Wolbachia endosymbiont of
           Muscidifurax uniraptor]
 gi|225591558|gb|EEH12577.1| MiaB-like tRNA modifying enzyme [Wolbachia endosymbiont of
           Muscidifurax uniraptor]
          Length = 172

 Score =  161 bits (407), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 62/173 (35%), Positives = 97/173 (56%), Gaps = 2/173 (1%)

Query: 225 ITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL 284
           +   G ++  + G  L G+    S +   L +I  L RLR ++    ++ D L+    + 
Sbjct: 1   VVFTGVDITDF-GTDLLGKPSLGSMIRRVLKDIPELKRLRLSSIDVAEVDDELMDLIANE 59

Query: 285 DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETD 344
             LMP+LHL +QSG++ ILK M RRH   +  +   +++S+RP+IA  +D I GFP ETD
Sbjct: 60  SRLMPHLHLSLQSGNNLILKRMKRRHNREQVIEFCHKMKSLRPNIAFGADIIAGFPTETD 119

Query: 345 DDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKK 397
           + F+ T+DL+ K       +F YS R  TP + M  QV ENV+ ER+  L++ 
Sbjct: 120 EMFQDTVDLLKKTNILYLHAFPYSERKSTPAARMP-QVPENVRKERVKNLREV 171


>gi|297706883|ref|XP_002830254.1| PREDICTED: CDK5 regulatory subunit-associated protein 1-like,
           partial [Pongo abelii]
          Length = 229

 Score =  158 bits (401), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 72/225 (32%), Positives = 123/225 (54%), Gaps = 24/225 (10%)

Query: 73  REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT 132
           REKA + +++ L +++ LK  R +    L + + GC+A+   EEIL R  +V+++ GP  
Sbjct: 8   REKAEQTIWNRLHQLKALKTRRPRSRVPLRIGILGCMAERLKEEILNREKMVDILAGPDA 67

Query: 133 YYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTF 192
           Y  LP LL  A  G++  +   S+++ +  +  V          +AF++I  GCD  C++
Sbjct: 68  YRDLPRLLAVAESGQQAANVLLSLDETYADVMPVQTS---ASATSAFVSIMRGCDNMCSY 124

Query: 193 CVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG--------------- 237
           C+VP+TRG E SR ++ +++E +KL + G+ E+TLLGQNVN++R                
Sbjct: 125 CIVPFTRGRERSRPIASILEEVKKLSEQGLKEVTLLGQNVNSFRDNSEVQFNNAVPTNLS 184

Query: 238 KGLDGEKCT------FSDLLYSLSEIKGLVRLRYTTSHPRDMSDC 276
           +G      T      F+ LL  +S +   +R+R+T+ HP+D  D 
Sbjct: 185 RGFTTNYKTKQGGLRFAHLLDQVSRVDPEMRIRFTSPHPKDFPDE 229


>gi|301169364|emb|CBW28964.1| unnamed protein product [Haemophilus influenzae 10810]
          Length = 143

 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 43/141 (30%), Positives = 77/141 (54%), Gaps = 6/141 (4%)

Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER 390
           + S FIVGFPGET++DF+  +D + +    +   FK+SP  G P ++M +QV E+VK ER
Sbjct: 1   MRSTFIVGFPGETEEDFQLLLDFLKEAQLDRVGCFKFSPVEGAPATDMADQVPEDVKEER 60

Query: 391 LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPWLQSVVLNSK----N 444
                +  +E   +     +G+ ++VL+++  ++   G+    +P +  +V        N
Sbjct: 61  FHRFMQLQQEISANRLKQKIGKTLDVLVDEIDEDGIIGRSKADAPEVDGLVYVDNLSGIN 120

Query: 445 HNIGDIIKVRITDVKISTLYG 465
             +G++IKV IT+     L+G
Sbjct: 121 VKVGNVIKVTITNSDEYDLWG 141


>gi|218670177|ref|ZP_03519848.1| putative 2-methylthioadenine synthetase (miaB-like) protein
           [Rhizobium etli GR56]
          Length = 155

 Score =  157 bits (397), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 77/134 (57%), Positives = 99/134 (73%)

Query: 12  HMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCH 71
               Q +      ++ F+K+YGCQMNVYDS RM D     GYE    M++ADL++LNTCH
Sbjct: 22  QAPEQTLRDGSNSRKVFIKTYGCQMNVYDSTRMSDALARDGYEPTEDMEEADLVLLNTCH 81

Query: 72  IREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ 131
           IREKAAEKVYS LGR+R +K  +  +G ++++ VAGCVAQAEGEEILRR+P V+VV+GPQ
Sbjct: 82  IREKAAEKVYSALGRLREMKKKKAADGREMMIGVAGCVAQAEGEEILRRAPAVDVVIGPQ 141

Query: 132 TYYRLPELLERARF 145
           TY+RLPE L RA+ 
Sbjct: 142 TYHRLPEALRRAKQ 155


>gi|322513299|ref|ZP_08066420.1| MiaB family RNA modification enzyme [Actinobacillus ureae ATCC
           25976]
 gi|322120898|gb|EFX92750.1| MiaB family RNA modification enzyme [Actinobacillus ureae ATCC
           25976]
          Length = 254

 Score =  157 bits (396), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 69/267 (25%), Positives = 111/267 (41%), Gaps = 34/267 (12%)

Query: 48  FFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAG 107
             + GY  + S ++ADL+++NTC   + A ++    +G                 V+V G
Sbjct: 1   MRTDGYNIIPSYENADLVIVNTCGFIDSAVQESLEAIGEALQENGK---------VIVTG 51

Query: 108 CVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVD 167
           C+  A+  +I    P V  + G  +Y    + + +              E       +  
Sbjct: 52  CLG-AKENQIREVHPKVLEITGSHSYEAAMQHVHKY---------VPRPERNIYTSLVPA 101

Query: 168 GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITL 227
            G        A+L I EGCD  CTFC++P  RG   SR + QV+DEA++L D+GV E+ +
Sbjct: 102 QGVKLTPKHYAYLKISEGCDHRCTFCIIPSMRGDLDSRPIVQVLDEAKRLADSGVKELLI 161

Query: 228 LGQNV----------NAWRGKGLDGE--KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSD 275
           + Q+           N  +    +G   K     L   L  +   VRL Y   +P     
Sbjct: 162 VSQDTSAYALDQSKENQNKTVFWNGAPIKNNLITLCEQLGTLGIWVRLHYVYPYPHVDDL 221

Query: 276 CLIKAHGDLDVLMPYLHLPVQSGSDRI 302
             + A G    ++PYL +P+Q  S  I
Sbjct: 222 IPLMAQG---KILPYLDIPLQHASPSI 245


>gi|116753871|ref|YP_842989.1| radical SAM domain-containing protein [Methanosaeta thermophila PT]
 gi|116665322|gb|ABK14349.1| Radical SAM domain protein [Methanosaeta thermophila PT]
          Length = 430

 Score =  157 bits (396), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 89/368 (24%), Positives = 149/368 (40%), Gaps = 48/368 (13%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD---DADLIVLN---TCHIREKAAEKVYS 82
           V +YG       S+ +  +   +G+    S D   D D+I+L+   T  + + A      
Sbjct: 10  VYTYG-------SMVLGGILRDRGHSVNISKDLRHDGDVIILSLFSTLQLLDPA------ 56

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +    +     +  GG     V  C       E++     V+ V   +    +  L+E 
Sbjct: 57  -IREFVSKAGPPVYCGGP----VGIC------PEMVLGELDVDAVAMCEGEGIIARLVEA 105

Query: 143 ---------ARFGKRVVDTD---YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190
                     R G+ ++ ++     V D    L   D      RG   ++    GC   C
Sbjct: 106 GPEGVPGVAYREGEEIIRSEPLRMEVIDHTMPLFPPDLSEQSVRGANVYIETHRGCLGGC 165

Query: 191 TFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSD 249
           TFC VP   G    SRSL  +V+E R+L   GV  + + G    +  G     +K  F  
Sbjct: 166 TFCQVPRFFGRNIRSRSLENIVEEVRELRRMGVKRVAVSGG-TASLFGYRNALDKDAFIR 224

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
           +L  LS I G   L         + D +++A  +  +   +L   ++SGSDR+LK M + 
Sbjct: 225 MLQELSGILGRKNLSVPDMRVDLVDDEILEAIREYTI--GWLFFGIESGSDRMLKLMRKG 282

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369
            T  +  + ++  RS    + +   FIVG+PGE+ +DF  T+D +++      F     P
Sbjct: 283 VTVLDNIRAVELARS--HGVKVGGSFIVGYPGESREDFEQTLDFMEEAMLDDVFVSIAEP 340

Query: 370 RLGTPGSN 377
             GTP + 
Sbjct: 341 IPGTPLAR 348


>gi|212274679|ref|NP_001130719.1| hypothetical protein LOC100191823 [Zea mays]
 gi|194689936|gb|ACF79052.1| unknown [Zea mays]
          Length = 308

 Score =  157 bits (396), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 47/163 (28%), Positives = 86/163 (52%), Gaps = 3/163 (1%)

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           MNR +T  E+R+++D +  + P + I++D I GFPGETD+DF  T++LV +  + Q    
Sbjct: 1   MNREYTVGEFRKVVDTLCELVPGMQIATDIICGFPGETDEDFSETVNLVKEYQFPQVHIS 60

Query: 366 KYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK 425
           ++ PR GTP + M ++V  N   +R   L      +  S      G++ ++ I +   + 
Sbjct: 61  QFYPRPGTPAARM-KKVPSNEVKKRSRELTSVF--ESFSPYQGMEGKVEKIWITEIASDG 117

Query: 426 GKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
             LVG +     V++ + +  +G     +IT V   +++G +V
Sbjct: 118 VHLVGHTKGYIQVLVTAPDSMLGTSADAKITSVGRWSVFGVVV 160


>gi|241068525|ref|XP_002408459.1| conserved hypothetical protein [Ixodes scapularis]
 gi|215492447|gb|EEC02088.1| conserved hypothetical protein [Ixodes scapularis]
          Length = 203

 Score =  156 bits (395), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 56/217 (25%), Positives = 99/217 (45%), Gaps = 24/217 (11%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V ++GC++N+Y+S  +       G +        ++ + NTC + + A ++    + + +
Sbjct: 9   VVTFGCRLNIYESEIIRKNLELSGID--------NVAIFNTCAVTKAAEKQARQAICKAK 60

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
                  K   DL ++V GC AQ    ++    P V+ V+G +          +    K 
Sbjct: 61  -------KNNPDLKIIVTGCSAQTSP-QMYGNMPEVDKVIGNEEKLLPNYY--QITDEKI 110

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
            V+   SV++    L     G +R     AF+ +Q GCD FCTFC++PY RG   S ++ 
Sbjct: 111 TVNDIMSVKETASHLVSSFDGKSR-----AFIQVQNGCDHFCTFCIIPYGRGKSRSVAIG 165

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
            + ++ + L+ NG  E+   G +V A  G  L G   
Sbjct: 166 AIAEQVKHLVLNGFKEVVFTGVDVTA-YGSDLPGSPT 201


>gi|76154241|gb|AAX25732.2| SJCHGC04814 protein [Schistosoma japonicum]
          Length = 350

 Score =  156 bits (395), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 64/246 (26%), Positives = 106/246 (43%), Gaps = 22/246 (8%)

Query: 243 EKCTFSDLLYSLSE-IKGLVRLRYTTSHPRDMSDCL--IKAHGDLDVLMPYLHLPVQSGS 299
              T +DLL  L   I     LR   ++P  + D L  I        +  +LH+PVQSGS
Sbjct: 17  HHMTLADLLAGLVPLIPPGCMLRLGMTNPPYILDQLVEIAEVLSHPRVYSFLHIPVQSGS 76

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVR-------------PD----IAISSDFIVGFPGE 342
           D +L +M R +T  E+  ++D +                 P+    + I++D I GFP E
Sbjct: 77  DAVLDAMKREYTVEEFSTVVDYLMKNVKPPSLPPYALDDAPNGSGALTIATDVICGFPTE 136

Query: 343 TDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQ 402
           T+ +F  T +L+ K  +      ++  R GTP +NM  + + +    R   L    R   
Sbjct: 137 TNKNFEETFELIKKYRFPVLHINQFFARPGTPAANMSRKANSSEVKHRTRRLHDLFR--S 194

Query: 403 VSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKIST 462
               D  +G  + VLI +   +    VG +   + ++L       G I+ VRIT+     
Sbjct: 195 YRTYDGRIGCEVRVLITEPSFDGKFWVGHTKAYEQILLPKLPDVYGCIVLVRITECDKFF 254

Query: 463 LYGELV 468
           + G ++
Sbjct: 255 MRGIII 260


>gi|330901912|gb|EGH33273.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Pseudomonas
           syringae pv. japonica str. M301072PT]
          Length = 128

 Score =  154 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 44/127 (34%), Positives = 68/127 (53%), Gaps = 2/127 (1%)

Query: 344 DDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQV 403
           + DF  TM L++ +G+  +FSF YSPR GTP +++ +   E +K ERL  LQ +L +Q  
Sbjct: 1   EKDFDNTMKLIEDVGFDFSFSFVYSPRPGTPAADLKDDTPEALKKERLAALQHRLNQQGF 60

Query: 404 SFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLNSKNH-NIGDIIKVRITDVKIS 461
             +   VG I  +L+  +  K+ G+L GR+   + V     N   IG    V I D +  
Sbjct: 61  EISRQMVGSIQRILVTDYSKKDPGELQGRTENNRIVNFRCDNPKLIGQFADVHIDDAQPH 120

Query: 462 TLYGELV 468
           +L G L+
Sbjct: 121 SLRGSLL 127


>gi|256079507|ref|XP_002576028.1| radical sam proteins [Schistosoma mansoni]
 gi|238661286|emb|CAZ32263.1| radical sam proteins, putative [Schistosoma mansoni]
          Length = 184

 Score =  154 bits (389), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 47/150 (31%), Positives = 85/150 (56%), Gaps = 1/150 (0%)

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
           +D +++   +   +   +HLP QSGS  +L++M R +T   Y ++++ I  + P+++++S
Sbjct: 35  TDDVLQLICERKNICSNIHLPAQSGSSVVLENMRRGYTRQAYMELVNTIHEIVPNVSLTS 94

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQVDENVKAERLL 392
           DFI GF GET++D   +++L++++GY+  F F YS R  T    ++ + V   VK  R  
Sbjct: 95  DFIAGFCGETEEDHSQSLELIERVGYSFCFCFPYSMREKTFAYHHLTDDVPIEVKKRRHD 154

Query: 393 CLQKKLREQQVSFNDACVGQIIEVLIEKHG 422
            L    R + + FN   +G I  VL+E   
Sbjct: 155 ELAMISRNKSLEFNQKQIGTIQIVLVEGVS 184


>gi|298711179|emb|CBJ32403.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 254

 Score =  154 bits (389), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 54/207 (26%), Positives = 90/207 (43%), Gaps = 30/207 (14%)

Query: 293 LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352
           +P  S    + + M R ++   Y  ++D  R+  P ++ISSDFI GF GET++D R T+ 
Sbjct: 1   MPHYSADWLLQERMGRGYSREAYLALVDHARATVPGVSISSDFISGFCGETEEDHRDTLS 60

Query: 353 LVDKIGYAQAFSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFN-DACV 410
           L++ + Y QAF + YS R  T  +  + + V   VK  RL  + +  R   ++ N +  +
Sbjct: 61  LMETVRYDQAFMYAYSLREKTRAARRLKDDVPPTVKQRRLEEVIETFRRNALAKNLEEEI 120

Query: 411 GQIIEVLIEKHGK----EKGKLVGRSPWLQSVVLNSKN---------------------- 444
           G+   VL+E   +    E  +L GR+   + VV   +                       
Sbjct: 121 GKDHLVLVEGRSRRWSEEAPELTGRTDGNKRVVFPDRGVIDGMGRFSEVSCGKQQQRQQR 180

Query: 445 --HNIGDIIKVRITDVKISTLYGELVV 469
                GD   V + +    TL G  + 
Sbjct: 181 TTLRPGDYAVVNVRETSGITLRGSAIA 207


>gi|195098944|ref|XP_001997957.1| GH23519 [Drosophila grimshawi]
 gi|193891550|gb|EDV90416.1| GH23519 [Drosophila grimshawi]
          Length = 214

 Score =  153 bits (388), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 47/163 (28%), Positives = 82/163 (50%), Gaps = 3/163 (1%)

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           M R +   ++  ++D +RS  P + I++D I GFP ET+ DF  TM L +K  +   F  
Sbjct: 1   MKREYCRKDFEHVVDFLRSRVPGLTIATDIICGFPTETEQDFEETMTLCEKYQFPSLFIN 60

Query: 366 KYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK 425
           ++ PR GTP + M E++  N+  +R   L                GQ+  VL+ +   +K
Sbjct: 61  QFFPRPGTPAAKM-ERIPANLVKKRTKRLTDLFY--SYEPYAGREGQLYTVLVTEISHDK 117

Query: 426 GKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
              VG +   + V+L  + + +G  ++VRIT     ++ GE++
Sbjct: 118 LHYVGHNKSYEQVLLPMRKNLLGTRVRVRITSSSKFSMMGEIL 160


>gi|12835700|dbj|BAB23330.1| unnamed protein product [Mus musculus]
          Length = 230

 Score =  153 bits (387), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 42/146 (28%), Positives = 74/146 (50%), Gaps = 3/146 (2%)

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           +   P I I++D I GFPGETD DF+ T+ LV++  +   F  ++ PR GTP +   EQV
Sbjct: 1   KEKVPGITIATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAK-AEQV 59

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
             +VK +R   L +       +  D  +G+  +VL+ +   +    V  + + + V++  
Sbjct: 60  PAHVKKQRTKDLSRVF--HSYNPYDHKIGERQQVLVTEESFDSKFYVAHNRFYEQVLVPK 117

Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
               +G +++V I +     L G+ V
Sbjct: 118 NPAFMGKMVEVDIYESGKHFLKGQPV 143


>gi|270676233|ref|ZP_06222691.1| Fe-S oxidoreductase [Haemophilus influenzae HK1212]
 gi|270316429|gb|EFA28315.1| Fe-S oxidoreductase [Haemophilus influenzae HK1212]
          Length = 189

 Score =  153 bits (386), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 58/196 (29%), Positives = 92/196 (46%), Gaps = 19/196 (9%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
             S GC  N+ DS R+     + GY  V S ++ DL+++NTC   + A ++    +G   
Sbjct: 13  FVSLGCPKNLVDSERILTELRTDGYNIVPSYENVDLVIVNTCGFIDSAVQESLESIGEAL 72

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
                      +  V+V GC+  A+ ++I    P V  V GP +Y  +   + +      
Sbjct: 73  E---------ENGRVIVTGCLG-AKEDQIREVHPKVLEVSGPHSYEAVMAQVHKY----- 117

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
                    + +  L +   G        A+L I EGCD  CTFC++P  RG   SRS++
Sbjct: 118 ---VPKPTHNPYISL-VPKQGVKLTPKHYAYLKISEGCDHRCTFCIIPSMRGDLESRSIT 173

Query: 209 QVVDEARKLIDNGVCE 224
           QV+DEA++L + GV E
Sbjct: 174 QVLDEAKRLAEAGVKE 189


>gi|15669056|ref|NP_247860.1| hypothetical protein MJ_0865 [Methanocaldococcus jannaschii DSM
           2661]
 gi|2501542|sp|Q58275|Y865_METJA RecName: Full=Putative methylthiotransferase MJ0865
 gi|1591549|gb|AAB98870.1| conserved hypothetical protein [Methanocaldococcus jannaschii DSM
           2661]
          Length = 449

 Score =  152 bits (385), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 82/378 (21%), Positives = 149/378 (39%), Gaps = 43/378 (11%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYER--VNSMDD-----ADLIVLN---TCHIREKAAE 78
           V +YG       ++ +  +   +GY    V  +D      +D+I+ +   T HI +K   
Sbjct: 19  VYTYG-------AMLIGGILKHKGYNVHLVRKIDKTLFLKSDVIIFSLYSTLHILDKNIR 71

Query: 79  KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPE 138
           +   F+ ++R  K           V VAGCV     E IL    +  V+VG       P+
Sbjct: 72  EAIDFIKKVRKNKTK---------VYVAGCV-STYPEIILNELNVDGVIVGEGEIT-TPK 120

Query: 139 LLERARFG-------KRVVDTDYSVEDKFERLSIVDGGYNRK--RGVTAFLTIQEGCDKF 189
           ++E  + G       + V++      D    L ++     ++  RG   ++    GC   
Sbjct: 121 IIEGDKEGLAYKEGDEIVINYPKEKPDLNHPLPLIPKDIEQQSIRGANVYIETHRGCLGN 180

Query: 190 CTFCVVPYTRGI-EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS 248
           CTFC VP   G    SR +  VV+E +     G   I + G    +         +  F 
Sbjct: 181 CTFCQVPKFFGKTIRSRDVEDVVEEVKAFKRAGAKRIAISGG-TGSLYAFKKSINRDKFF 239

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
           +LL  +SE+ G   L         + + +++A  +  +   ++   ++SGSD+ILK M +
Sbjct: 240 ELLEKVSEVIGKNNLSVPDMRVDYVDEEILEAIKNYTI--GWVFYGIESGSDKILKDMKK 297

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
                +    I   +     + ++  FIV +P ET+ D+  T D +        F     
Sbjct: 298 GTNREKNLDAIKLAKDC--GVKVAGSFIVAYPTETEMDYLLTKDFIVDAELDDVFVSIAE 355

Query: 369 PRLGTPGSNMLEQVDENV 386
           P   T   +++  + +  
Sbjct: 356 PIPTTELCDLVLSMPKEE 373


>gi|195388800|ref|XP_002053066.1| GJ23539 [Drosophila virilis]
 gi|194151152|gb|EDW66586.1| GJ23539 [Drosophila virilis]
          Length = 189

 Score =  151 bits (382), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 55/174 (31%), Positives = 80/174 (45%), Gaps = 14/174 (8%)

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           M R +T   Y +++  IR + PD+ +SSDFI GF GETD +F  T+ L++ + Y  AF F
Sbjct: 1   MRRGYTREAYLELVSHIRQMLPDVGLSSDFICGFCGETDSEFEDTISLIESVRYNVAFLF 60

Query: 366 KYSPRLGTPGSNML-EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE 424
            YS R  T       + V   VK  RL  + +  RE     +    GQ   +LIE   K 
Sbjct: 61  AYSMREKTTAHRRYVDDVPALVKTARLQRMVQAFREGATQLHKRFEGQEQLILIEGKSKR 120

Query: 425 -KGKLVGRSPWLQSVVLN------------SKNHNIGDIIKVRITDVKISTLYG 465
            +    GR+     V++             +K+ N+GD +  RI D     L G
Sbjct: 121 SENFWFGRNDANIKVIVPAASLPTAEANVSAKDINVGDFVVARIVDSNSQVLKG 174


>gi|162708468|gb|ABY19632.1| hypothetical protein [Pseudomonas syringae pv. apii]
 gi|162708470|gb|ABY19633.1| hypothetical protein [Pseudomonas syringae pv. tomato]
 gi|162708472|gb|ABY19634.1| hypothetical protein [Pseudomonas syringae pv. tomato str. JL1065]
 gi|162708474|gb|ABY19635.1| hypothetical protein [Pseudomonas syringae pv. tomato]
 gi|162708476|gb|ABY19636.1| hypothetical protein [Pseudomonas syringae pv. antirrhini str. 126]
          Length = 239

 Score =  151 bits (381), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 70/260 (26%), Positives = 114/260 (43%), Gaps = 29/260 (11%)

Query: 69  TCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVV 128
           TC   + A  +    +G         IKE G   V+V GC+   +   I    P V  V 
Sbjct: 1   TCGFIDTAKAESLEVIGEA-------IKENG--KVIVTGCMG-VDASVIRAVHPSVLSVT 50

Query: 129 GPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
           GPQ Y ++   +      ++  +    +        +   G        A+L I EGC+ 
Sbjct: 51  GPQQYEQVVNAVHDVVPPRKDHNPLIDL--------VPPQGVKLTPRHYAYLKISEGCNH 102

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA------WRGKGLDG 242
            C+FC++P  RG  +SR +  V+DEA++L+ +GV E+ ++ Q+ +A      +R    DG
Sbjct: 103 SCSFCIIPSMRGKLVSRPVGDVLDEAKRLVKSGVKELLVISQDTSAYGVDVKYRTGFWDG 162

Query: 243 E--KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300
           +  K   ++L  +L  +   VRL Y   +P       + A G    ++PYL +P Q  S 
Sbjct: 163 QPVKTRMTELCQALGSMGVWVRLHYVYPYPHVDELIPLMAAG---KILPYLDIPFQHASP 219

Query: 301 RILKSMNRRHTAYEYRQIID 320
           +ILK M R     +    I 
Sbjct: 220 KILKLMKRPAFEDKTLARIK 239


>gi|119596730|gb|EAW76324.1| CDK5 regulatory subunit associated protein 1, isoform CRA_g [Homo
           sapiens]
          Length = 209

 Score =  150 bits (379), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 52/194 (26%), Positives = 79/194 (40%), Gaps = 21/194 (10%)

Query: 283 DLDVLMPYLHLPVQSGSDRILKSM-------NRRHTAYEYRQIIDRIRSVRPDIAISSDF 335
             D +  ++ L   S   + L            R++   Y +++  IR   P +++SSDF
Sbjct: 4   RSDYMWKFIVLSFYSIHLKRLDLCRPFPFVLYCRYSREAYVELVHHIRESIPGVSLSSDF 63

Query: 336 IVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQVDENVKAERLLCL 394
           I GF GET++D   T+ L+ ++ Y   F F YS R  T     + + V E VK  RL  L
Sbjct: 64  IAGFCGETEEDHVQTVSLLREVQYNMGFLFAYSMRQKTRAYHRLKDDVPEEVKLRRLEEL 123

Query: 395 QKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVLNSKN--------- 444
               RE+    N   VG    VL+E   K     L GR+     V+              
Sbjct: 124 ITIFREEATKANQTSVGCTQLVLVEGLSKRSATDLCGRNDGNLKVIFPDAEMEDVNNPGL 183

Query: 445 ---HNIGDIIKVRI 455
                 GD + V++
Sbjct: 184 RVRAQPGDYVLVKV 197


>gi|330506954|ref|YP_004383382.1| radical SAM domain-containing protein [Methanosaeta concilii GP-6]
 gi|328927762|gb|AEB67564.1| radical SAM domain protein [Methanosaeta concilii GP-6]
          Length = 430

 Score =  149 bits (377), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 64/230 (27%), Positives = 108/230 (46%), Gaps = 6/230 (2%)

Query: 158 DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARK 216
           D    L   D G    RG   ++    GC   CTFC VP   G    SRS+  +VDE ++
Sbjct: 131 DHILPLIPDDLGQQNVRGANVYIETHRGCLGSCTFCQVPRFFGRSIRSRSIENIVDEVKE 190

Query: 217 LIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDC 276
           +   GV  + + G    +  G      +  F +++ SLS+I G   L         + + 
Sbjct: 191 MKRLGVKRVAISGG-TGSLFGYRNKINREAFVEMIRSLSQILGKRNLSVPDMRVDLVDET 249

Query: 277 LIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFI 336
           +++A  D  +   ++   ++SGSDRIL++M +  T  +  + ++  +S+   + +   FI
Sbjct: 250 VLEAVRDYTI--GWVFFGLESGSDRILRAMRKGVTVEDNLRAVELAKSL--GVKVGGSFI 305

Query: 337 VGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           VG+PGET +DF  TM  V++      F     P  GTP S  +  + ++V
Sbjct: 306 VGYPGETREDFEETMSFVEESMLDDVFVSIAEPIPGTPLSAQVLDMPKDV 355


>gi|315927398|gb|EFV06736.1| miaB-like tRNA modifying enzyme YliG, TIGR01125 [Campylobacter
           jejuni subsp. jejuni DFVF1099]
          Length = 263

 Score =  149 bits (376), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 61/248 (24%), Positives = 110/248 (44%), Gaps = 13/248 (5%)

Query: 217 LIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDC 276
           ++  G  + + + Q+ +++      GEK     L+  + +IKG+   R    +P   S+ 
Sbjct: 1   MVARGYKDFSFIAQDTSSYLFD--KGEKDGLIRLIDEVEKIKGIRAARILYLYPTSASEA 58

Query: 277 LIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFI 336
           LIK     ++ + Y  +P+Q  SD +LK M R   +   +++++ ++S  P+  + + FI
Sbjct: 59  LIKRIIASEIFINYFDMPLQHISDNMLKIMKRGANSTRLKEMLNLMKSA-PNSFLRTGFI 117

Query: 337 VGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQK 396
           VG PGE++ DF    + V   G+ +   F YS    T   +M EQV   V  +RL  ++K
Sbjct: 118 VGHPGESEADFEELCEFVKDFGFDRISVFAYSKEEDTAAFDM-EQVPFKVINKRLKIIEK 176

Query: 397 KLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG----R-SPWLQSVVL----NSKNHNI 447
            + E      +  VGQ   V+      E    +     R    +   +L       N  +
Sbjct: 177 IVDEVIEKSFEKEVGQKRLVVCTGKSSEGEFFIAAKDLRWDREIDGEILINESECGNLEM 236

Query: 448 GDIIKVRI 455
           G I +  I
Sbjct: 237 GQIYECEI 244


>gi|126178341|ref|YP_001046306.1| radical SAM domain-containing protein [Methanoculleus marisnigri
           JR1]
 gi|125861135|gb|ABN56324.1| Radical SAM domain protein [Methanoculleus marisnigri JR1]
          Length = 435

 Score =  148 bits (374), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 75/365 (20%), Positives = 145/365 (39%), Gaps = 20/365 (5%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERV---NSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + +YG       ++ +  +    G+           AD ++L +    +   +     L 
Sbjct: 10  IYTYG-------AMLIGGVLRDAGHRVTLTRTPAVPADSVLLMSLFSTQHLLDPAIRDLV 62

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVV----VGPQTYYRLPELLE 141
           R    +   +  GG +       + +   + ++       V+     G          L+
Sbjct: 63  RTHRERGGLVYVGGPVSAAPEMVLGELAPDAVVVGEGEETVIRLVEEGVSDALPGIAFLD 122

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
             R          S+ D+   L   D G    RG +A++    GC   CTFC VP   G 
Sbjct: 123 AGRPVVTPPAPPASM-DRPLPLIPDDIGNQSVRGASAYIETHRGCIGGCTFCQVPRFFGR 181

Query: 202 -EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
              SR L ++V+E +    +G   +++ G   + +   G +     F  LL S++E+ G 
Sbjct: 182 AIRSRPLDRIVEEVKAFSAHGATRLSVSGGTGSLYGSTGGEMNPEAFIGLLRSMAEVMGP 241

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
             +         +SD ++ A     +   ++   ++SGSDR+L+ M +  T  +  + ++
Sbjct: 242 KNVSSPDIRVDCISDEILGAVRQYTI--GWVFFGIESGSDRVLRLMGKGATVRQVEEAVE 299

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           R R     + ++  FIVG+PGET+ D+ AT DL+  +     F     P   TP +++  
Sbjct: 300 RCRE--HGLRVAGSFIVGYPGETERDYEATKDLIAALSLDDVFVSSAEPIPATPLADLAV 357

Query: 381 QVDEN 385
           +   +
Sbjct: 358 RTPRD 362


>gi|302806527|ref|XP_002985013.1| hypothetical protein SELMODRAFT_424158 [Selaginella moellendorffii]
 gi|300147223|gb|EFJ13888.1| hypothetical protein SELMODRAFT_424158 [Selaginella moellendorffii]
          Length = 353

 Score =  148 bits (373), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 61/239 (25%), Positives = 104/239 (43%), Gaps = 24/239 (10%)

Query: 161 ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN 220
           + L  +D    RK      + I  GC   CT+C   + RG   S ++  +V   + ++  
Sbjct: 37  DALPSLDLPKVRKNKFVEIIPINVGCLGACTYCKTKHARGHLGSYTVDTLVQRLKTVVSE 96

Query: 221 GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKA 280
           G      +G N+ A     +                     R +Y   +    +      
Sbjct: 97  G----RDIGANIPALLRALVAALPH----------------RQKYNAPNLHLTASG---G 133

Query: 281 HGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFP 340
           +G    +  +LH+ VQSG D +L+ M R +T  E+R+I+D +  + P+I I++D I GFP
Sbjct: 134 NGCHPCVYSFLHVLVQSGRDSVLEGMKREYTFSEFRKIVDTLTRLVPEIHIATDIICGFP 193

Query: 341 GETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLR 399
           GET +DF   M+L+ +  + Q    ++ PR GTP + M ++V      +R   L     
Sbjct: 194 GETSEDFDRIMELIREYTFPQVHISQFYPRPGTPAALM-KRVPTLEVKKRSRSLTSLFE 251


>gi|15679182|ref|NP_276299.1| phosphonoacetaldehyde methylase [Methanothermobacter
           thermautotrophicus str. Delta H]
 gi|2622278|gb|AAB85660.1| phosphonoacetaldehyde methylase [Methanothermobacter
           thermautotrophicus str. Delta H]
          Length = 438

 Score =  147 bits (371), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 80/366 (21%), Positives = 150/366 (40%), Gaps = 34/366 (9%)

Query: 39  YDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEG 98
           Y S+ +       G+ RV      D        ++ +           +   ++   K G
Sbjct: 14  YGSMLIAGALRDLGH-RVEIRKGFD-------GVKSEIVFISLQSTIHLLRYRDIINKMG 65

Query: 99  GDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA--------------R 144
           G  +V        +   E++ R   V++VV  +   ++  ++E A              R
Sbjct: 66  GFRVVG----GPVSIDPEMVFRYLDVDLVVMGEGEDKVGPVMELAAGNCKPEDVPGAAFR 121

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRK--RGVTAFLTIQEGCDKFCTFCVVPYTRGI- 201
             + +V ++ S       L +V G  +R+  RG + ++    GC   CTFC VP   G  
Sbjct: 122 SPEGIVVSESSPCPMERPLPLVPGDISREDIRGASVYIETHRGCPGNCTFCQVPEFFGRN 181

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG-EKCTFSDLLYSLSEIKGL 260
             SR L  ++ E R+L  +G     + G     +      G ++  F DLL  +SE+ G 
Sbjct: 182 VRSRPLKDIIMEVRELKSSGARRFAISGGTGTLYGSSKFRGIDEEAFRDLLRCISEVTGS 241

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
             L         +S  ++ A  +      ++   ++SGS R+L+ M +  T  +  + ++
Sbjct: 242 RNLTVPDIRVDMVSPEILDAISEYTN--GWVFYGIESGSRRMLRKMKKGITPDQVVEAVE 299

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
             R    ++ ++  FIVG+PGE DDD++ T++L D++     F     P  GT     + 
Sbjct: 300 LAREY--NLKVAGSFIVGYPGEDDDDYQETLELADELMLDDYFVSIAEPLPGTELGEEVM 357

Query: 381 QVDENV 386
           ++ E+ 
Sbjct: 358 ELPEDE 363


>gi|304315299|ref|YP_003850446.1| hypothetical protein MTBMA_c15540 [Methanothermobacter marburgensis
           str. Marburg]
 gi|302588758|gb|ADL59133.1| conserved hypothetical protein [Methanothermobacter marburgensis
           str. Marburg]
          Length = 430

 Score =  147 bits (370), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 76/366 (20%), Positives = 138/366 (37%), Gaps = 49/366 (13%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERVN----SMDDADLIVLNTCHIREKAAEKVYSFLGR 86
           +YG       S+ +  +    GY            AD++ ++          +    L R
Sbjct: 13  TYG-------SMLIAGVLRDLGYSVELRKGLDGAGADVVFIS---------LQSTIHLLR 56

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVV---GPQTYYRLPELLERA 143
            R++ N+          VV G V+     E++ R   V++V+   G        E+   +
Sbjct: 57  YRDIINNIRGFR-----VVGGPVS--MDPELVLRHLDVDLVIQGEGEDKVGMAMEVASGS 109

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRK-------------RGVTAFLTIQEGCDKFC 190
                +    +   + F           R              RG + ++    GC   C
Sbjct: 110 LDASEIPGAAFKSPEGFIINEPARCSMKRALPLVPADISQENIRGASVYIETHRGCPGNC 169

Query: 191 TFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG-EKCTFS 248
           TFC VP   G E  SR L  ++ E R+L  +G     + G     +      G ++  F+
Sbjct: 170 TFCQVPEFFGREVRSRPLEDIIREVRELRKSGARRFAISGGTGTLYGSSRFRGIDEDAFT 229

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
           +LL  +SEI G   L         ++  ++ A  +      ++   ++SGS RIL+ M +
Sbjct: 230 ELLREISEITGPRNLTVPDIRVDMVTPEILDAISEYTN--GWVFYGIESGSRRILRRMKK 287

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
                +  + ++  R    ++ ++  FIVG+PGE + D   T++L D++     F     
Sbjct: 288 GIKPGDVIEAVELARE--HNLKVAGSFIVGYPGEDERDHEETLELADELMLDDYFVSIAE 345

Query: 369 PRLGTP 374
           P  GT 
Sbjct: 346 PIPGTE 351


>gi|145641844|ref|ZP_01797419.1| lipoyl synthase [Haemophilus influenzae R3021]
 gi|145273466|gb|EDK13337.1| lipoyl synthase [Haemophilus influenzae 22.4-21]
          Length = 143

 Score =  147 bits (370), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 39/107 (36%), Positives = 60/107 (56%), Gaps = 1/107 (0%)

Query: 363 FSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422
           FSF YS R GTP ++M + V E+ K +RL  LQ+++ +Q   F+   +G    VL+E   
Sbjct: 3   FSFVYSARPGTPAADMPDDVTEDEKKQRLYVLQERINQQAAQFSRRMLGTEQRVLVEGPS 62

Query: 423 KEK-GKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           K+   +L GR+   + V        IG  + V+ITDV  ++L GE+V
Sbjct: 63  KKDIMELTGRTETNRIVNFQGSPEMIGKFVDVKITDVYTNSLRGEVV 109


>gi|270702409|ref|ZP_06223065.1| Fe-S oxidoreductase [Haemophilus influenzae HK1212]
 gi|270315832|gb|EFA27939.1| Fe-S oxidoreductase [Haemophilus influenzae HK1212]
          Length = 144

 Score =  147 bits (370), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 50/142 (35%), Positives = 77/142 (54%), Gaps = 3/142 (2%)

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
               L   L ++   VRL Y   +P       + A G    L+PYL +P+Q  S +ILK+
Sbjct: 6   DLMTLCKQLGKLGIWVRLHYVYPYPHVDDLIPLMADGT---LLPYLDIPLQHASPKILKA 62

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           M R  +     + I + R + PD+ + S FIVGFPGET++DF+  +D + +    +   F
Sbjct: 63  MKRPGSIDRTLERIKQWREICPDLTLRSTFIVGFPGETEEDFQLLLDFLKEAQLDRVGCF 122

Query: 366 KYSPRLGTPGSNMLEQVDENVK 387
           K+SP  G P ++M +QV E+VK
Sbjct: 123 KFSPVEGAPATDMADQVPEDVK 144


>gi|256811066|ref|YP_003128435.1| Radical SAM domain protein [Methanocaldococcus fervens AG86]
 gi|256794266|gb|ACV24935.1| Radical SAM domain protein [Methanocaldococcus fervens AG86]
          Length = 443

 Score =  146 bits (368), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 82/378 (21%), Positives = 150/378 (39%), Gaps = 43/378 (11%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYER--VNSMD-----DADLIVL---NTCHIREKAAE 78
           V +YG       S+ +  +   +GY    V ++D      +D+++    +T HI +K   
Sbjct: 10  VYTYG-------SMLIGGILKDRGYNVHLVRNIDKTLFLKSDVVIFSLYSTLHILDKEIN 62

Query: 79  KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPE 138
           +  +F+ ++R  K           V VAGCV+     EI+     V+ V+  +     P+
Sbjct: 63  EAINFIKKVRKNKTK---------VYVAGCVS--AYPEIILNELNVDGVIVGEGELTTPK 111

Query: 139 LLERARFG-------KRVVDTDYSVEDKFERLSIV--DGGYNRKRGVTAFLTIQEGCDKF 189
           ++E    G       + VV+      D    L ++  D G    RG   ++    GC   
Sbjct: 112 IIEGDNEGLAYKNGDEIVVNYPKEKPDLNHPLPLIPKDIGQQSVRGANVYIETHRGCLGN 171

Query: 190 CTFCVVPYTRGI-EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS 248
           CTFC VP   G    SR +  VV+E +     G   I + G    +         +  F 
Sbjct: 172 CTFCQVPKFFGKTIRSREVEDVVEEVKAFKRAGAKRIAISGG-TGSLYAFKKSVNRDKFF 230

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
           +LL  +S I G   L         + + +++A  +  +   ++   ++SGSD+IL+ M +
Sbjct: 231 ELLEKISGIVGKNNLSVPDMRVDYVDEDILEAIKNYTI--GWVFYGIESGSDKILRDMKK 288

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
                +    I   +     + ++  FIV +P ET+ D+  T D +        F     
Sbjct: 289 GTNREKNLDAIKLAKDC--GVKVAGSFIVAYPTETEKDYLLTKDFIVDAELDDVFVSIAE 346

Query: 369 PRLGTPGSNMLEQVDENV 386
           P   T   +++  + +  
Sbjct: 347 PIPTTELCDLVLSIPKEE 364


>gi|156185984|gb|ABU55310.1| MiaB-like tRNA modifying enzyme [Callosobruchus chinensis]
          Length = 165

 Score =  145 bits (366), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 56/175 (32%), Positives = 91/175 (52%), Gaps = 11/175 (6%)

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            S  ++ ++++ R   +NG  E+   G ++  + G  L  +    S +   L +I  L R
Sbjct: 2   QSVPINSIIEQIRIFAENGYQEVVFTGVDITDF-GTDLFAKPSLGSMIRRVLKDIPELKR 60

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           LR ++          I    +   LMP+LHL +QSG++ ILK M RRH   +  +   ++
Sbjct: 61  LRLSS----------IDLIANESRLMPHLHLSLQSGNNLILKRMKRRHNREQVIEFCHKM 110

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
           +S+RP+IA  +D I GFP ETD+ F+ T+DL+ K       +F YS R  TP + 
Sbjct: 111 KSLRPNIAFGADIIAGFPTETDEMFQDTVDLLKKTNIVYLHAFPYSERKNTPAAR 165


>gi|256069402|ref|XP_002571132.1| radical sam proteins [Schistosoma mansoni]
 gi|238652163|emb|CAZ38817.1| radical sam proteins, putative [Schistosoma mansoni]
          Length = 206

 Score =  145 bits (365), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 57/212 (26%), Positives = 96/212 (45%), Gaps = 33/212 (15%)

Query: 36  MNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRI 95
           MN  D+     +    GY  V S +  D ++L TC IR+ A  K++  +  +R+L    +
Sbjct: 1   MNRSDANIAHSLLTKAGYTIVPSDEQCDTVLLMTCAIRDSAEVKIWRRIQHLRSLHRKYV 60

Query: 96  KEGGDLLVVVAGCVAQAEGEEILRRSPI---------------------VNVVVGPQTYY 134
           K      + V GC+A+   +++L  +                        + V GP +Y 
Sbjct: 61  K------IGVLGCMAKRLKDKLLMDNSCKTSKAGDLQSSSFGHNSFNVAADFVCGPDSYR 114

Query: 135 RLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRG------VTAFLTIQEGCDK 188
            LP+L+E A  G +      S+E+ +  ++ V   +            TAFL++  GCD 
Sbjct: 115 DLPKLIEDAHSGLKGASVALSLEETYADVTPVRRHFTTDESSDPVLSPTAFLSVMRGCDN 174

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDN 220
            CT+C+VP+ RG E SR L  ++ EA+ L + 
Sbjct: 175 MCTYCIVPFVRGRERSRPLDSILHEAQSLFNE 206


>gi|156937162|ref|YP_001434958.1| radical SAM domain-containing protein [Ignicoccus hospitalis
           KIN4/I]
 gi|156566146|gb|ABU81551.1| Radical SAM domain protein [Ignicoccus hospitalis KIN4/I]
          Length = 421

 Score =  144 bits (363), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 66/279 (23%), Positives = 114/279 (40%), Gaps = 19/279 (6%)

Query: 125 NVVVGPQTYYRLPELLERARFGK--RVVDTDYSVEDKFERLSIVD----GGYNRKRGVTA 178
           +  V  +    LPELL     G   R V   YS E       + D      +   RG+  
Sbjct: 98  DAAVHGEAEETLPELLRALEEGSDWRRVKGVYSDEGFSGPRGLADLDRYPPWPHWRGLVG 157

Query: 179 FLTIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG 237
            + I  GC   C++C   +        RS+  V+  A  + D G+ ++  +  N  ++ G
Sbjct: 158 PIEITRGCPFACSYCQTTFMFKAFVRHRSIENVIKYASIMRDMGLKDMRFITPNALSYGG 217

Query: 238 KGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLI--KAHGDLDVLM--PYLHL 293
              DG +     +   L+ +K L    +  S P ++    +  ++   L   +    L +
Sbjct: 218 ---DGRRPNLEAVEELLARLKKLGVRTFFGSFPSEVRPEFVNEESIKILKKYVSNKRLVI 274

Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
             QS SD +LK ++R H   +    ++   SV+       DFI+G PGE+++D   T+  
Sbjct: 275 GAQSASDAVLKRIHRGHAWEDVVNAVEV--SVKHGFVPEVDFILGLPGESEEDMMETLRG 332

Query: 354 VDKIGY--AQAFSFKYSPRLGTP-GSNMLEQVDENVKAE 389
           + K+    A+A    + P  GTP        + E V+ E
Sbjct: 333 MRKLASMGARAHLHYFMPLPGTPLAYADPTPLPERVRKE 371


>gi|288926973|ref|ZP_06420869.1| LOW QUALITY PROTEIN: 2-methylthioadenine synthetase [Prevotella
           buccae D17]
 gi|288336256|gb|EFC74641.1| LOW QUALITY PROTEIN: 2-methylthioadenine synthetase [Prevotella
           buccae D17]
          Length = 144

 Score =  144 bits (363), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 47/145 (32%), Positives = 72/145 (49%), Gaps = 10/145 (6%)

Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP-GSNMLEQVDENVKAE 389
           I +  +VGFPGET+DDFR  +D V +  + +  +F YS   GT    +  + V  +VK  
Sbjct: 2   IRTTLLVGFPGETEDDFRQLVDFVREARFERMGAFAYSEEEGTYSAEHYEDDVPADVKQR 61

Query: 390 RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQS-VVLNSKN 444
           RL  L    +E         VGQ++ V+I++  KE    VGR+    P +   V++ +  
Sbjct: 62  RLDELMAVQQEISAEIEAGKVGQVMPVIIDR--KEGNYYVGRTEFCSPEVDPEVLIPAGR 119

Query: 445 HNI--GDIIKVRITDVKISTLYGEL 467
             +  G    V+I D +   LYGEL
Sbjct: 120 KRLRTGCFYNVKIVDSEEFDLYGEL 144


>gi|167471079|ref|ZP_02335783.1| putative tRNA-thiotransferase [Yersinia pestis FV-1]
          Length = 127

 Score =  143 bits (362), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 55/124 (44%), Positives = 83/124 (66%), Gaps = 5/124 (4%)

Query: 22  IVPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKV 80
            + ++  +K++GCQMN YDS +M D+  S  GY+     ++ADL++LNTC IREKA EKV
Sbjct: 5   PMTKKLHIKTWGCQMNEYDSSKMADLLASTHGYQLTTIPEEADLLLLNTCSIREKAQEKV 64

Query: 81  YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140
           +S LG+ + LK         L++ V GCVA  EGE++ +R+P V+V+ GPQT +RLPE++
Sbjct: 65  FSLLGQWKLLKEK----NPQLIIGVGGCVASQEGEQLRQRAPCVDVIFGPQTLHRLPEMI 120

Query: 141 ERAR 144
              +
Sbjct: 121 NHVQ 124


>gi|2462120|emb|CAA72027.1| bc48b [Bacillus cereus ATCC 10987]
          Length = 226

 Score =  143 bits (362), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 61/173 (35%), Positives = 98/173 (56%), Gaps = 15/173 (8%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
             ++F++++YGCQMN +D+  M  +F + GYE   S ++AD+++LNTC IRE A  KV+ 
Sbjct: 64  TGRKFYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEEADVVLLNTCAIRENAENKVFG 123

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELL 140
            LG ++ LK    +   DLL+ V GC++Q E    +I++++  V++V G    +RLP +L
Sbjct: 124 ELGHLKALK----RRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYIL 179

Query: 141 ERARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTF 192
           + A F K  V   +S E D  E L  V  G + K    + + I       CT+
Sbjct: 180 KDAMFSKETVVEVWSKEGDVIENLPKVRRG-DIKASPRSTILI-------CTY 224


>gi|942591|gb|AAC44029.1| unknown [Mycoplasma iowae]
          Length = 199

 Score =  143 bits (361), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 42/202 (20%), Positives = 100/202 (49%), Gaps = 14/202 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
            F + + GC++N+++S  +++     G   V     AD+ ++NTC +  KA  K   ++ 
Sbjct: 9   TFAIHTLGCKVNLFESNSIKNDLIMNGLVEVPFDSKADVYIINTCTVTNKADAKSRLYIK 68

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R          +  D +++VAGC++Q   +  L     +++ +G +    + +L+     
Sbjct: 69  RAH-------VQNKDAIIIVAGCMSQVNKD--LMDKLKISIQIGNKYKNSVFDLINEYLK 119

Query: 146 GKRVVDTDYSV--EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            +  +    ++  E KFE+       +       AF+ IQ+GC+  C++C++P++RG + 
Sbjct: 120 KRERIYRVENILAEKKFEQ---TTQDFIFLENTRAFIKIQDGCNFMCSYCIIPFSRGRQR 176

Query: 204 SRSLSQVVDEARKLIDNGVCEI 225
           S+ +  ++++ + L+   + ++
Sbjct: 177 SQKMESILEKIKTLVSKNLKKL 198


>gi|213420671|ref|ZP_03353737.1| hypothetical protein Salmonentericaenterica_24192 [Salmonella
           enterica subsp. enterica serovar Typhi str. E01-6750]
          Length = 166

 Score =  143 bits (360), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 46/177 (25%), Positives = 79/177 (44%), Gaps = 19/177 (10%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC  N+ DS R+     ++GY+ V   DDAD++++NTC   + A ++    +G
Sbjct: 9   KIGFVSLGCPKNLVDSERILTELRTEGYDVVPHYDDADMVIVNTCGFIDSAVQESLEAIG 68

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                         +  V+V GC+  A+ ++I    P V  + GP +Y ++ + +     
Sbjct: 69  EA---------LNENGKVIVTGCLG-AKEDQIREVHPKVLEITGPHSYEQVLQHVHHY-- 116

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
                       + F  L + + G        A+L I EGC+  CTFC++P  RG  
Sbjct: 117 ------VPKPKHNPFLSL-VPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGDL 166


>gi|289806634|ref|ZP_06537263.1| radical SAM superfamily protein [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
          Length = 134

 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 42/124 (33%), Positives = 66/124 (53%), Gaps = 1/124 (0%)

Query: 276 CLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDF 335
            +I    +   ++PYL +P+Q  S RILK M R  +       I + R + P++ + S F
Sbjct: 8   DVIPLMAE-GKILPYLDIPLQHASPRILKLMKRPGSVDRQLARIKQWREICPELTLRSTF 66

Query: 336 IVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQ 395
           IVGFPGET++DF+  +D + +    +   FKYSP  G   + + +QV E VK ER     
Sbjct: 67  IVGFPGETEEDFQMLLDFLKEARLDRVGCFKYSPVEGAGANELPDQVPEEVKEERWNRFM 126

Query: 396 KKLR 399
           +  +
Sbjct: 127 QLQQ 130


>gi|218660819|ref|ZP_03516749.1| MiaB-like tRNA modifying enzyme [Rhizobium etli IE4771]
          Length = 164

 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 49/164 (29%), Positives = 76/164 (46%), Gaps = 9/164 (5%)

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
           D ILK M RRH+     + I+ +R VRP++   +D I GFP ET++ F   + L ++ G 
Sbjct: 1   DMILKRMKRRHSRAGALRFIEDVRRVRPEMTFGADMIAGFPTETEEMFGNAVRLAEEAGI 60

Query: 360 AQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419
           A    F YSPR GTP + M  Q+D  +  +R   L+    +   S  D  VG    +L+E
Sbjct: 61  AHLHVFPYSPRPGTPAARMP-QLDRALVKDRAARLRATGHKLYQSHLDGMVGTRQWLLVE 119

Query: 420 KHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTL 463
            +G      +  +     V   +     G+++   IT      L
Sbjct: 120 NNG------LAHTENFTLV--AAAGLRPGELVPATITGHNGKHL 155


>gi|268609252|ref|ZP_06142979.1| 2-methylthioadenine synthetase [Ruminococcus flavefaciens FD-1]
          Length = 169

 Score =  142 bits (357), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 52/141 (36%), Positives = 79/141 (56%), Gaps = 1/141 (0%)

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           MNR++TA EY Q+ +RIR + PD + ++D +VGFP ET +DF  + + V KIG+A+   F
Sbjct: 1   MNRKYTAEEYYQLTERIRKIFPDCSFTTDVMVGFPQETGEDFAESAEFVKKIGFAKVHVF 60

Query: 366 KYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK 425
           +YS R GT    M  QV ENVK ER   +     E +  +  + VG+ + VL E+    +
Sbjct: 61  RYSRRHGTRADKMDGQVPENVKTERWQKMTAAAGECREKYLASLVGKTVPVLFERENSTE 120

Query: 426 GKLVGRSPWLQSVVLNSKNHN 446
               G +P    + ++ KN  
Sbjct: 121 -FHHGYAPDYTLIKISRKNPE 140


>gi|217077399|ref|YP_002335117.1| Fe-S oxidoreductase family protein [Thermosipho africanus TCF52B]
 gi|217037254|gb|ACJ75776.1| Fe-S oxidoreductase family protein [Thermosipho africanus TCF52B]
          Length = 376

 Score =  142 bits (357), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 75/338 (22%), Positives = 133/338 (39%), Gaps = 32/338 (9%)

Query: 54  ERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAE 113
           E  +   +  +++ +      +A       +  ++ LK S        +VV  G  A A 
Sbjct: 21  EIFSYEKEGTVVLYSFMSFDLEAV------VDELKKLKKS------GYMVVAGGPHATAM 68

Query: 114 GEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRK 173
            +++L       V VG        E + +   GK   +  Y    K   LS        K
Sbjct: 69  PQQLLN-LGFDYVFVG-----DGEENIRKFIDGKFPENRIYDGITKRVVLSDYPPFCPEK 122

Query: 174 RGVTAFLTIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVCEITLLGQN- 231
             +   + I  GC   C +C  P   G     R + Q+V+ ++  ++N       +  N 
Sbjct: 123 S-LYMPIEITRGCPFSCGYCQTPRLAGKLVRHRPIEQIVEYSKIGVENNRKIARFISPNS 181

Query: 232 VNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT----SHPRDMSDCLIKAHGDLDVL 287
                  G+         LLY+L ++ G+  + + T      P  +++ ++K        
Sbjct: 182 FGYGSKNGVTPNPEAVDTLLYNLKKV-GVEEIYFGTFPSDVRPESVNEEILKVIKKYVN- 239

Query: 288 MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDF 347
             Y+ +  QSGS+R+L+ + R H   E  + +  ++    D     DFI GFP ETD+D 
Sbjct: 240 NKYIVIGAQSGSERVLEMIKRGHNLEEIERALSLLKEY--DFIPRVDFIFGFPFETDEDI 297

Query: 348 RATMDLVDKI--GY-AQAFSFKYSPRLGTPGSNMLEQV 382
             T + + KI   Y A+  +  + P  GTP +N+   V
Sbjct: 298 EKTFEFIKKIVNKYKAKVHAHTFMPLPGTPLANIGPGV 335


>gi|312137014|ref|YP_004004351.1| radical sam domain protein [Methanothermus fervidus DSM 2088]
 gi|311224733|gb|ADP77589.1| Radical SAM domain protein [Methanothermus fervidus DSM 2088]
          Length = 429

 Score =  141 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 76/329 (23%), Positives = 132/329 (40%), Gaps = 25/329 (7%)

Query: 75  KAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYY 134
            A     S    I  LK  +     D   VV G V       ++ +   V+ V+  +   
Sbjct: 40  NADITFISLQSTIHLLKYQKNINSIDSFKVVGGPV--TMDPSMVFKYLDVDAVMVGEAEN 97

Query: 135 RLPELLERARFGKRVVDTDYSVEDKFERLS---------------IVDGGYNRKRGVTAF 179
           +L   + +    K        ++D+ + +                  D      RG   +
Sbjct: 98  KLENFMRKFEENKLDEIEGVILKDQKDEIPKMIHSNSLDRPLPYIPPDIKNENIRGANVY 157

Query: 180 LTIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG- 237
           +    GC   C FC VP   G E  SR L+++V+E ++ +  G   I + G       G 
Sbjct: 158 IETHRGCPGNCGFCQVPKFFGREVRSRKLNEIVNEVKEFVKMGARRIAISGG-TGTLYGC 216

Query: 238 -KGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQ 296
            K  +  +  F +LL +LS+I G   L         +S  +++A         ++   ++
Sbjct: 217 KKFKEINEEAFIELLKNLSKITGKENLTIPDIRVDTVSPEIMEAISKYTN--GWVFYGIE 274

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
           SGS++ILK MN+        + ++  R     + ++  FIVG+PGET+DDF AT+ L D 
Sbjct: 275 SGSEKILKKMNKGIKIETVYEAVELARE--HGVKVAGSFIVGYPGETEDDFEATLSLADD 332

Query: 357 IGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
           +     F     P  GTP +  ++ +  +
Sbjct: 333 LMLDDYFVSIAEPIPGTPLAEEVKNLPLD 361


>gi|289192769|ref|YP_003458710.1| Radical SAM domain protein [Methanocaldococcus sp. FS406-22]
 gi|288939219|gb|ADC69974.1| Radical SAM domain protein [Methanocaldococcus sp. FS406-22]
          Length = 437

 Score =  141 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 84/376 (22%), Positives = 145/376 (38%), Gaps = 41/376 (10%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYER--VNSMDD-----ADLIVLN---TCHIREKAAE 78
           V +YG       S+ +  +   +GY    V  +D      +D+++ +   T HI  K   
Sbjct: 10  VYTYG-------SMLIGGILKHKGYNVYLVRKIDKTLFLKSDVVIFSLYSTLHILNKNIR 62

Query: 79  KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG------PQT 132
           +   F+ ++R  K           V +AGC+     E IL    +  V+VG      P+ 
Sbjct: 63  EAIDFIKKVRKNKTK---------VYIAGCI-STYPEIILNELNVDGVIVGEGEITTPRI 112

Query: 133 YYRLPELLERARFGKRVVDTDYSVEDKFERLSIV--DGGYNRKRGVTAFLTIQEGCDKFC 190
                E L      + VV+      D    L ++  D G    RG   ++    GC   C
Sbjct: 113 IEGDKEGLAYREGDEIVVNYPKERPDLNHPLPLIPKDIGQQSIRGANVYIETHRGCLGNC 172

Query: 191 TFCVVPYTRGI-EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSD 249
           TFC VP   G    SR +  VV+E +     G   I + G    +         +  F +
Sbjct: 173 TFCQVPKFFGKTIRSREVEDVVEEVKAFKRAGAKRIAISGG-TGSLYAFKKSVNREKFFE 231

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
           LL  +SE+ G   L         + + +++A  +  +   ++   ++SGSD+ILK M + 
Sbjct: 232 LLEKVSEVVGKNNLSVPDMRVDYVDEDILEAIKNYTI--GWVFYGIESGSDKILKDMKKG 289

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369
               +    I   +     + ++  FIV +P ETD D+  T D +        F     P
Sbjct: 290 TNREKNLDAIKLAKDC--GVKVAGSFIVAYPTETDMDYLLTKDFIVDAELDDVFVSIAEP 347

Query: 370 RLGTPGSNMLEQVDEN 385
              T   +++  + + 
Sbjct: 348 IPTTELCDLVLSMPKE 363


>gi|330895565|gb|EGH27874.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Pseudomonas
           syringae pv. japonica str. M301072PT]
          Length = 153

 Score =  141 bits (355), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 65/161 (40%), Positives = 99/161 (61%), Gaps = 11/161 (6%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++ +++++GCQMN YDS RM D+    Q  E     +DAD+I+LNTC IRE+A ++VY
Sbjct: 1   MAKKLYIETHGCQMNEYDSSRMVDLLGEHQALEVTARAEDADVILLNTCSIRERAQDRVY 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           S LGR R LK +      ++++ V GCVA  EG  I  R+P V+VV GPQT +RLPE+++
Sbjct: 61  SQLGRWRELKLA----NPEMVIAVGGCVASQEGAAIRDRAPYVDVVFGPQTLHRLPEMID 116

Query: 142 RARFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLT 181
            AR  +   VD  +   +KF+ L        R  G +A+++
Sbjct: 117 AARVTRLPQVDVSFPEIEKFDHLP-----EPRVDGPSAYVS 152


>gi|302806569|ref|XP_002985034.1| hypothetical protein SELMODRAFT_424054 [Selaginella moellendorffii]
 gi|300147244|gb|EFJ13909.1| hypothetical protein SELMODRAFT_424054 [Selaginella moellendorffii]
          Length = 613

 Score =  140 bits (352), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 82/389 (21%), Positives = 140/389 (35%), Gaps = 72/389 (18%)

Query: 55  RVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG 114
             +S   ADL ++NTC ++    E +      IR  K + I                   
Sbjct: 3   ISDSPQRADLWLINTCTVKAPTMETL------IRKGKAASI------------------- 37

Query: 115 EEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKF---ERLSIVDGGYN 171
                  P+V+  +    + R               +T    E      + L  +D    
Sbjct: 38  -------PLVDSWMRSSGFKRSRSCQRHRSAANTAGETLKGHEAWLLRRDALPSLDLPKV 90

Query: 172 RKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQN 231
            K      + I  GC   CT+C   + RG   S ++  +V   + ++  G      +G N
Sbjct: 91  CKNKFVEIIPINVGCLGACTYCKTKHARGHLGSYTVDTLVQRLKTVVSEG----RDIGAN 146

Query: 232 VNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL 291
           + A     +                     R +Y   +    +      +G    +  +L
Sbjct: 147 IPALLCALVAALPH----------------RQKYNAPNLHLTASG---GNGCHPCVYSFL 187

Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351
           H+ VQSG D +L+ M R +T  E+R+I+D +  + P+I I++D I GFPGET +DF   M
Sbjct: 188 HVLVQSGRDSVLEGMKREYTFSEFRKIVDTLTRLVPEIHIATDVICGFPGETSEDFDRIM 247

Query: 352 DLVDKIGYAQAFSFKYSPRL----------GTPGSNMLEQVDENVKAERLLCLQKKLREQ 401
           +L+ +  + Q    ++ PR            T GS    +   N ++E +     K    
Sbjct: 248 ELIREYTFPQVHISQFYPRPVFILSISLDRNTGGS---NETGSNARSEEMKPFLDKSVRI 304

Query: 402 QVSFNDACVGQIIEVLIEKHGKEKGKLVG 430
             S      G+   V +     +   LVG
Sbjct: 305 VHSLRRNG-GKTYRVWVTNTAADGIHLVG 332


>gi|261402407|ref|YP_003246631.1| Radical SAM domain protein [Methanocaldococcus vulcanius M7]
 gi|261369400|gb|ACX72149.1| Radical SAM domain protein [Methanocaldococcus vulcanius M7]
          Length = 439

 Score =  140 bits (352), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 78/377 (20%), Positives = 147/377 (38%), Gaps = 41/377 (10%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYER--VNSMDD-----ADLIVLN---TCHIREKAAE 78
           V +YG       ++ +  +   + ++   V  +D      +D+I+ +   T HI  +  +
Sbjct: 10  VYTYG-------AMLIGGILKHEKHDVKLVKKIDKTLFLKSDVIIFSLYSTLHILNENIK 62

Query: 79  KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG------PQT 132
           +  +F+ + R  +           + +AGCV  A  E IL    +  V+VG      P+ 
Sbjct: 63  RTITFIKKSRKNRTK---------IYIAGCV-SAYPEIILNELNVDGVIVGEGEITTPRI 112

Query: 133 YYRLPELLERARFGKRVVDT--DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190
                E L      + V++   +    D    L   D G    RG   ++    GC   C
Sbjct: 113 VKGDKEGLAYREGDEIVINLSKEKPELDHPIPLIPKDIGQQSVRGANVYIETHRGCLGNC 172

Query: 191 TFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSD 249
           TFC VP   G    SR +  VV+E +     G   I + G    +         +  F +
Sbjct: 173 TFCQVPKFFGKNIRSRDVEDVVEEVKAFKRAGAKRIAISGG-TGSLYAFKKSVNRNKFFE 231

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
           LL ++S+I G   L         + + ++ A  +  +   ++   ++SGSD+IL+ M + 
Sbjct: 232 LLENVSKIVGKNNLSVPDMRVDYVDEDILTAIKNYTI--GWVFYGIESGSDKILRDMKKG 289

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369
               +    I   +    ++ ++  FIV +P ET+ D+  T D +        F     P
Sbjct: 290 TNREKNLDAIKLAKDC--EVKVAGSFIVAYPTETEMDYLLTKDFIVDAELDDVFVSIAEP 347

Query: 370 RLGTPGSNMLEQVDENV 386
              T   +++  + +  
Sbjct: 348 IPTTELCDLVLSMPKEE 364


>gi|45357610|ref|NP_987167.1| radical SAM domain-containing protein [Methanococcus maripaludis
           S2]
 gi|45047170|emb|CAF29603.1| conserved hypothetical protein [Methanococcus maripaludis S2]
          Length = 369

 Score =  139 bits (351), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 79/367 (21%), Positives = 146/367 (39%), Gaps = 38/367 (10%)

Query: 44  MEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLV 103
           +    F +  E + ++D  D+++ +   ++EK   +V S +  ++ LK        D+++
Sbjct: 21  IGGTLFKEFGEIIENLDSLDILIYSFMSMQEK---EVLSEINELKKLKK-------DVIL 70

Query: 104 VVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERL 163
           +  G       E+ L      +V+VG      LP L+   + GK       + E   +  
Sbjct: 71  IAGGAHPSGCPEDTLN-LGFDHVIVGEGEIS-LPNLINSIKSGK-------TPEKIIKGK 121

Query: 164 SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGV 222
            I +     K    A + I  GC   C FC  P   G     RS+  +V   + + D   
Sbjct: 122 PIENFDDYEKIWPLAPIEITRGCPYNCRFCQTPQIFGKNIRHRSIESIVKIVKTMGD--- 178

Query: 223 CEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLI--KA 280
             I  +  N  ++  K   G K     L   +  +  + +  +  + P ++    +  + 
Sbjct: 179 --IRFVTPNAFSYGSKT--GTKPDIEKLEKLMKSLFEIKKRLFFGTFPSEVRPEFVNFET 234

Query: 281 HGDLDVLM--PYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVG 338
              ++      Y+H   QSGSD +LK + R H   +    ++  +    D+    DFI G
Sbjct: 235 LDLVNKYCDNRYIHFGAQSGSDEVLKHIRRGHLVSDVINAVETSKEC--DLIPKVDFIFG 292

Query: 339 FPGETDDDFRATMDLVDKI--GYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQK 396
           FP ETDD  + ++DL+  I     +  +  + P  GT          E ++ E L  L K
Sbjct: 293 FPDETDDQRKESIDLMKYIIKKNGKVHAHYFMPLCGT---YFENSTPELLEKETLDILGK 349

Query: 397 KLREQQV 403
             ++ Q+
Sbjct: 350 MAKKGQI 356


>gi|21227624|ref|NP_633546.1| Fe-S oxidoreductase [Methanosarcina mazei Go1]
 gi|20906012|gb|AAM31218.1| Fe-S oxidoreductase [Methanosarcina mazei Go1]
          Length = 374

 Score =  139 bits (350), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 71/340 (20%), Positives = 123/340 (36%), Gaps = 32/340 (9%)

Query: 71  HIREKAAEKVYSF---LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVV 127
              +   + +  +     +   +       G D + +  G       EE L+    V + 
Sbjct: 26  GFTDSPVDGIMIYSFTTRQAAKVFKEVENAGTDSIFIAGGPHPSGCPEETLKYFDYVVIG 85

Query: 128 VGPQTYYRLPELLERARFGKRVVDTDYSVEDK--------FERLSIVDGGYNRKRGVTAF 179
            G +T   L  +L++      V    Y   D            +++        + + A 
Sbjct: 86  EGEETLPELVRVLQKKGDPGEVKGIAYKNPDTGRITLTPERPHVNLDSYPCFDPKKLRAP 145

Query: 180 LTIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK 238
           + I  GC   C +C  P   G E   RS+  ++  A         ++  +  N  A+   
Sbjct: 146 IEISRGCPWGCKYCQTPRLFGREVRHRSIDSILKNA-----QHYNDLRFIASNAFAYGSD 200

Query: 239 GLDGEKCTFSDLLYSLSEIK------GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLH 292
           G+         LL +L ++       G            + S  L++ +   D     L 
Sbjct: 201 GIHPRFDKVEKLLSALHKLPDKKIFFGTFPSEVRPEFVTEESVELVRKYCAND----SLS 256

Query: 293 LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352
           L  QSGSDRILK + R HT  +    ++       DI  + DFI G P ET++D   +++
Sbjct: 257 LGAQSGSDRILKEIRRGHTVEDSISAVECCLE--HDIMPAVDFIFGLPTETEEDQEKSLE 314

Query: 353 LVDKI--GYAQAFSFKYSPRLGTP-GSNMLEQVDENVKAE 389
           LV  I        +   +P  GTP  S++   V + V+ E
Sbjct: 315 LVRWICEKGGTVRAHYMTPLPGTPYASSVPSDVSDRVRRE 354


>gi|149924339|ref|ZP_01912707.1| MiaB-like tRNA modifying enzyme YliG [Plesiocystis pacifica SIR-1]
 gi|149814777|gb|EDM74348.1| MiaB-like tRNA modifying enzyme YliG [Plesiocystis pacifica SIR-1]
          Length = 199

 Score =  139 bits (350), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 37/187 (19%), Positives = 79/187 (42%), Gaps = 6/187 (3%)

Query: 287 LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDD 346
           +  YL +P+Q     +LK M R +T    R +++R+R     + + +  +VG PGE +  
Sbjct: 1   MATYLDVPIQHVDTNVLKKMRRGYTEKVVRDLVERLRKRDAHVWLRTTMLVGHPGEDEAA 60

Query: 347 FRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFN 406
           ++   D + +        F +S   GT  +   ++V   +  ER   + +     +    
Sbjct: 61  YQRLYDFIAEGQIDHLGVFPWSKEEGTTSAMHPQRVSPELADERAAAIMELQAGIRARKF 120

Query: 407 DACVGQIIEVLIEKHGKE-----KGKLVGRSPWLQS-VVLNSKNHNIGDIIKVRITDVKI 460
            A  G+++E++++    E       +  G++P +   V+L     + G  ++ RI     
Sbjct: 121 AALRGEVMELMVDGVSDESEFLLDARHEGQAPEIDGKVILCDGTADAGAFVQARIMRATE 180

Query: 461 STLYGEL 467
             L   +
Sbjct: 181 HDLIASM 187


>gi|315229966|ref|YP_004070402.1| hypothetical protein TERMP_00202 [Thermococcus barophilus MP]
 gi|315182994|gb|ADT83179.1| hypothetical protein TERMP_00202 [Thermococcus barophilus MP]
          Length = 424

 Score =  139 bits (350), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 80/424 (18%), Positives = 156/424 (36%), Gaps = 57/424 (13%)

Query: 43  RMEDMFFSQGYERVNSMDDADL---------IVLNTCHIREKAAEKVYSFLGRIRNLKNS 93
            +     SQG++    +   D          +VL +    E    +++     ++ LK  
Sbjct: 18  HLLGALESQGFDISGFLITKDFNEILKAKPKVVLYS-FFTE----EIWEVEKEVKILKEK 72

Query: 94  RIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT--------------YYRLPEL 139
                   L++  G  A A  +  L        V+G                 +    EL
Sbjct: 73  F-----SPLLIAGGYHATAMPKHTLNVLGFDIAVIGEGEEVLYQLLTTLKRTKFKITKEL 127

Query: 140 LE----RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
           L             V T ++  D F +       +     + A + I  GC   C +C  
Sbjct: 128 LSIRGLAFYLNGEFVFTGFAKVDDFAKFPP----FAESSFLIAPIEISRGCPFGCYYCQT 183

Query: 196 PYTRG-IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL 254
           PY +G     R + Q+V  ++++      ++  +  N  A+   G   +      LL +L
Sbjct: 184 PYIKGFKMRHRPIDQIVKYSKRM-----RDMRYITPNAFAYGSPGAILKLDKLEALLKAL 238

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLH-----LPVQSGSDRILKSMNRR 309
             ++   R  +  + P ++    +K    L++L+ Y       +  QSG D +LK+M+R 
Sbjct: 239 QPLRKEGRRLFYGTFPSEVRPEFVKPE-TLELLIKYADNRRLAIGAQSGDDVMLKAMHRL 297

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI--GYAQAFSFKY 367
           HT     + ++ +      I    DFIVG P E+++  R +++L+  I     +  +  +
Sbjct: 298 HTVRYVMEAVEYMIEY--GIEPVVDFIVGLPNESEESQRKSIELMKWIMRKGGKVRAHYF 355

Query: 368 SPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK 427
            P  GTP +            + L  +  K + +        + + ++ LIE+  +E   
Sbjct: 356 MPLPGTPWARCKPSPLSEEMKKFLGRMAAKGKIEGAWGIQIQLSKKLQKLIEEFYEEPMS 415

Query: 428 LVGR 431
            VG+
Sbjct: 416 YVGK 419


>gi|134046659|ref|YP_001098144.1| radical SAM domain-containing protein [Methanococcus maripaludis
           C5]
 gi|132664284|gb|ABO35930.1| Radical SAM domain protein [Methanococcus maripaludis C5]
          Length = 369

 Score =  138 bits (349), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 75/365 (20%), Positives = 146/365 (40%), Gaps = 38/365 (10%)

Query: 46  DMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVV 105
              F +  E + ++D  ++++ +   ++EK   +V + +  ++ LK        D++++ 
Sbjct: 23  GSLFKEFNEIIENLDSLEIVIYSFMSMQEK---EVLNEINELKKLKR-------DIILIA 72

Query: 106 AGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSI 165
            G       E+ L      +V++G      LP L+   + GK       + E   + + I
Sbjct: 73  GGPHPSGCPEDTLN-MGFDHVIIGEGEIS-LPNLINSIKSGK-------TPEKIIKGIPI 123

Query: 166 VDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVCE 224
            +     K    A + I  GC   C FC  P   G     RS+  +V   + + D     
Sbjct: 124 ENFEDYEKIWPLAPIEITRGCPYNCRFCQTPQIFGKNIRHRSIESIVKIVKTMGD----- 178

Query: 225 ITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLI--KAHG 282
           I  +  N  ++  K   G K     L   +  +  + +  +  + P ++    +  +   
Sbjct: 179 IRFVTPNAFSYGSKT--GTKPNIEKLEKLMKHLFEIKKRLFFGTFPSEVRPEFVTSETLD 236

Query: 283 DLDVLM--PYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFP 340
            ++      Y+H   QSGSD +LK + R HT  +    ++   S + D+    DFI GFP
Sbjct: 237 LINKYCDNRYIHFGAQSGSDEVLKHIRRGHTVSDVINAVET--SKKCDLIPKVDFIFGFP 294

Query: 341 GETDDDFRATMDLVDKI--GYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKL 398
            ET+   + ++DL+  I     +  +  +    GT          E ++ E L  L K  
Sbjct: 295 NETEIQRKESIDLMKYIIKKNGKVHAHYFMSLCGT---YFENSTPEPLEKEILDILGKMA 351

Query: 399 REQQV 403
           ++ Q+
Sbjct: 352 KKGQI 356


>gi|288923283|ref|ZP_06417420.1| 2-methylthioadenine synthetase-like protein [Frankia sp. EUN1f]
 gi|288345370|gb|EFC79762.1| 2-methylthioadenine synthetase-like protein [Frankia sp. EUN1f]
          Length = 257

 Score =  138 bits (348), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 48/213 (22%), Positives = 81/213 (38%), Gaps = 31/213 (14%)

Query: 281 HGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFP 340
                 L PYL L  Q  S  +L+ M R     ++  ++ R R +  D+   S+ IVGFP
Sbjct: 1   MLTTPGLAPYLDLSFQHASPAVLRRMRRFGGTDDFLDLLRRARGLLGDLGARSNVIVGFP 60

Query: 341 GETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLRE 400
           GET++D    MD +++        F YS   GT  + M   VD +    R + +   + +
Sbjct: 61  GETEEDVDILMDFLERADLDAVGVFGYSDEEGTEAAGMDGHVDPDEIERRRVDVTNLVEQ 120

Query: 401 QQVSFNDACVGQIIEVLIEKHGKEKGKLVG-------RSPWLQSVVLNSKNH-------- 445
              +  +  VG  +EVL+E+     G   G        +    +V L +           
Sbjct: 121 LTAARAERRVGTTVEVLVEEVS--GGLAFGCAGHQQADADGACTVRLPTGRSDETSRSRS 178

Query: 446 --------------NIGDIIKVRITDVKISTLY 464
                          +GD++  R+   +   L 
Sbjct: 179 DESGHGDGSAHGGVRVGDLVAARVVAAEGVDLV 211


>gi|159905287|ref|YP_001548949.1| radical SAM domain-containing protein [Methanococcus maripaludis
           C6]
 gi|159886780|gb|ABX01717.1| Radical SAM domain protein [Methanococcus maripaludis C6]
          Length = 369

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 75/365 (20%), Positives = 145/365 (39%), Gaps = 38/365 (10%)

Query: 46  DMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVV 105
              F +  E + ++D  ++++ +   ++EK   +V + +  ++ LK        D++++ 
Sbjct: 23  GSLFKEFNEIIENLDSLEILIYSFMSMQEK---EVLNEINELKKLKR-------DIILIA 72

Query: 106 AGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSI 165
            G       E+ L      +V++G      LP L+   + GK       + E   + + I
Sbjct: 73  GGPHPSGCPEDTLN-LGFDHVIIGEGEIS-LPNLINSIKSGK-------NPEKIIKGIPI 123

Query: 166 VDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVCE 224
            +     K    A + I  GC   C FC  P   G     RS+  +V   + + D     
Sbjct: 124 ENFDNYEKIWPLAPIEITRGCPYNCRFCQTPQIFGKNIRHRSIESIVKIVKTMGD----- 178

Query: 225 ITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLI--KAHG 282
           I  +  N  ++  K   G K     L   +  +  + +  +  + P ++    +  +   
Sbjct: 179 IRFVTPNAFSYGSKT--GTKPDIEKLEKLMKSLFEIKKRLFFGTFPSEVRPEFVTFETLD 236

Query: 283 DLDVLM--PYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFP 340
            ++      Y+H   QSGSD +LK + R H   +    ++  R    D+    DFI GFP
Sbjct: 237 LVNKYCDNRYIHFGAQSGSDEVLKHIRRGHLVSDVITAVETSREC--DLIPKVDFIFGFP 294

Query: 341 GETDDDFRATMDLVDKI--GYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKL 398
            ET+   + ++DL+  I     +  +  + P  GT          E ++ E L  L K  
Sbjct: 295 DETEIQRKESIDLMKYIIKKNGKVHAHYFMPLCGT---YFENSTPEPLEKEILDILGKMA 351

Query: 399 REQQV 403
           ++ Q+
Sbjct: 352 KKGQI 356


>gi|110773695|ref|XP_396696.3| PREDICTED: CDKAL1-like protein-like [Apis mellifera]
          Length = 264

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 51/205 (24%), Positives = 84/205 (40%), Gaps = 15/205 (7%)

Query: 10  VAHMVSQIVDQCIVP--QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVL 67
           +  +    +   I+P  Q  +VK++GC  N  DS  M     + GY+   +   ADL +L
Sbjct: 43  IEEIPQPPIFNSIIPGTQTIYVKTWGCTHNNSDSEYMAGQLAAYGYKLTENKYKADLWLL 102

Query: 68  NTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVV 127
           N+C ++  A +         RN   +  K G    VVVAGCV Q   +    +      +
Sbjct: 103 NSCTVKSPAED-------HFRNEIEAGKKIGKH--VVVAGCVPQGAPKSSFLQG---LSM 150

Query: 128 VGPQTYYRLPELLERARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGC 186
           +G Q   R+ E++E    G  V       E  K    + +     R+  +   + I  GC
Sbjct: 151 IGVQQIDRVVEVVEETLKGNTVRFLQQKKEAGKKIGGASLSLPKVRRNPLIEIIAINTGC 210

Query: 187 DKFCTFCVVPYTRGIEISRSLSQVV 211
              CT+C   + RG   S    +++
Sbjct: 211 LNQCTYCKTKHARGELGSYPPEELL 235


>gi|88602458|ref|YP_502636.1| radical SAM family protein [Methanospirillum hungatei JF-1]
 gi|88187920|gb|ABD40917.1| Radical SAM [Methanospirillum hungatei JF-1]
          Length = 372

 Score =  137 bits (346), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 72/307 (23%), Positives = 115/307 (37%), Gaps = 25/307 (8%)

Query: 104 VVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDK-FER 162
           V+ G  A A  +E++  +  V V  G    Y +P LL+    G  V     +        
Sbjct: 64  VIGGPHACARWDELVHIADYVVVGEG---EYTVPRLLQSIESGTPVPPGVATASSFQPVD 120

Query: 163 LSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI-EISRSLSQVVDEARKLIDNG 221
            ++   G         ++ I  GC   CT+C  P   G     RS+  +V  A     + 
Sbjct: 121 HTVFLDGNPSFSEYKGYIEISRGCPYGCTYCQTPRIFGNTIRHRSIGSIVRLA-----HS 175

Query: 222 VCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK------GLVRLRYTTSHPRDMSD 275
             +I  L  N  A+   GL  +      LL+ L++I       G            + + 
Sbjct: 176 FHDIRFLSPNALAYGTDGLHPDPRHIRSLLHELAKIPDKDIFLGTFPGEIRPEFVSEEAV 235

Query: 276 CLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDF 335
            LI  +     +    H+  QSG++  LK + R HT  +  + ID             D 
Sbjct: 236 DLIARYCSNTRI----HIGAQSGAESTLKRIRRGHTLSDVWRAIDHTTDA--GFTPVVDI 289

Query: 336 IVGFPGETDDDFRATMDLVDKI-GYAQAFSFKYSPRLGTP--GSNMLEQVDENVKAERLL 392
           IVGFP ETD++  AT+    ++       + ++    GTP  G    + + E V A   L
Sbjct: 290 IVGFPDETDEELLATVSFCREVSKIGYVHAHRFFSLPGTPLEGRVSRDLIPEVVSALGSL 349

Query: 393 CLQKKLR 399
            L  +L 
Sbjct: 350 ALSGRLT 356


>gi|288923284|ref|ZP_06417421.1| Protein of unknown function UPF0004 [Frankia sp. EUN1f]
 gi|288345371|gb|EFC79763.1| Protein of unknown function UPF0004 [Frankia sp. EUN1f]
          Length = 298

 Score =  137 bits (346), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 66/299 (22%), Positives = 106/299 (35%), Gaps = 78/299 (26%)

Query: 40  DSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN------- 92
           DS  +     + G+E V+  + AD +++NTC   + A +     L     L+        
Sbjct: 2   DSEELAARLATDGWELVDDAELADAVLVNTCGFVDVAKKDSIDALLAADALREPAGATTS 61

Query: 93  ----------SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
                          GG   VV  GC+A+  G+E+    P  + V+G   Y ++   LE 
Sbjct: 62  GERGGHGPGGPGPGAGGPRAVVAVGCLAERYGQELAESLPEADAVLGFDAYPQISAHLEA 121

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVD----------------------------------- 167
              G       ++  D+   L I                                     
Sbjct: 122 VLAG--AAPASHTPRDRRTLLPITPVERAGVSGAPHAPHLPGHIQLPTTQRAADTQRAAG 179

Query: 168 ----GGYNRKRGVTAFL------------------TIQEGCDKFCTFCVVPYTRGIEISR 205
               G  +R    +A +                   +  GCD+ C FC +P  RG  +SR
Sbjct: 180 TLAAGTGSRPSEPSAGVLAGGVGRRRLTEGPVVPLKLSSGCDRRCAFCAIPSFRGSHVSR 239

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
              QV+ EA  L   G  E+ L+ +N  +  GK L G+      LL  L+E+ G++R+R
Sbjct: 240 PPEQVLAEAEWLATQGARELVLVSENSTS-YGKDL-GDLRALEKLLPRLAEVPGIIRVR 296


>gi|242399457|ref|YP_002994882.1| Fe-S oxidoreductase family protein [Thermococcus sibiricus MM 739]
 gi|242265851|gb|ACS90533.1| Fe-S oxidoreductase family protein [Thermococcus sibiricus MM 739]
          Length = 424

 Score =  137 bits (346), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 80/420 (19%), Positives = 152/420 (36%), Gaps = 49/420 (11%)

Query: 43  RMEDMFFSQGYERVNSMDDADL---------IVLNTCHIREKAAEKVYSFLGRIRNLKNS 93
            +     SQG++    +   D          +VL +    E    +++     ++ LK  
Sbjct: 18  HLLGALESQGFDIGELLITKDFSEILKARSKVVLYS-FFTE----EIWDIEKEVKILKEK 72

Query: 94  RIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL---------LERAR 144
                 + L++  G    A  +  L +       +G         L         + +  
Sbjct: 73  T-----NALLIAGGYHTTAMPKHTLNKLGFDIATIGEGEEVIFHLLKTLTENNFRITKEL 127

Query: 145 FGKRVVDTDYSVEDKFERLSIVD-----GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
            G + +    +    F   + VD       +     + A + I  GC   C +C  PY +
Sbjct: 128 LGIKGLAFYLNGHFTFTGFARVDDFTKFPPFAETSRLIAPIEISRGCPFGCYYCQTPYVK 187

Query: 200 G-IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258
           G     R + Q+V  ++++      ++  +  N  A+   G          LL +L  I+
Sbjct: 188 GFRMRHRPIDQIVKYSKRM-----KDMRYITPNAFAYGSPGGILNLNKLEALLKALQPIR 242

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLH-----LPVQSGSDRILKSMNRRHTAY 313
              R  +  + P ++    IK    L++L+ Y       +  QSG D + K+M+R HT  
Sbjct: 243 KEGRRLFYGTFPSEVRPEFIKPE-TLELLLKYADNRRLAIGAQSGDDEMFKAMHRMHTTE 301

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI--GYAQAFSFKYSPRL 371
             RQ ++ +     DI    DFIVG P ET +  R +++ +  I     +  +  + P  
Sbjct: 302 NVRQAVEYMLEY--DIEPVVDFIVGLPNETKESQRKSIEFMKWIIKKGGKVRAHYFMPLP 359

Query: 372 GTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR 431
           GTP +            + L  +  K   +        + + ++ LIE+  +E    VG 
Sbjct: 360 GTPWARCKPSPLSEEMKKFLGRMAAKGYIEGSWGVQIELSKKLQRLIEEFYEESPSYVGD 419


>gi|307354286|ref|YP_003895337.1| Radical SAM domain-containing protein [Methanoplanus petrolearius
           DSM 11571]
 gi|307157519|gb|ADN36899.1| Radical SAM domain protein [Methanoplanus petrolearius DSM 11571]
          Length = 437

 Score =  137 bits (344), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 79/383 (20%), Positives = 150/383 (39%), Gaps = 52/383 (13%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYER-------VNSMDDADLIVLNTCHIREKAAEKVY 81
           + +YG       ++ +  +   +GY         V   +   L + +T           +
Sbjct: 10  IYTYG-------AMLIGGVLRDEGYNVSLSTKLSVKPKETLMLSLFST----------QH 52

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAG--------------CVAQAEGEEILRRSPIVNV- 126
                I+ L      +GG + V                  CV   EGEE +++     V 
Sbjct: 53  LLSDEIKKLVKDHRSKGGKVYVGGPVSAYFEMVLGELEPDCVCVGEGEETVKKLAGDGVS 112

Query: 127 --VVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQE 184
               G   Y    E++   +  +  V+       +   L   D G    RG +A++    
Sbjct: 113 NDFPGLAFYDDGSEIVFTGKAERVDVN------KRPLPLIPPDIGSQDIRGASAYIETHR 166

Query: 185 GCDKFCTFCVVPYTRGI-EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
           GC   CTFC VP   G    SRS+  ++ E R+    G   +++ G   + ++ K  +  
Sbjct: 167 GCTGGCTFCQVPRYFGRDIQSRSVEDILKEVREFKKRGAKRLSVSGGTGSLFQYKNGEIN 226

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
           +  F +L+  ++EI G   +         +SD +++A  +  +   ++   ++SGSDR+L
Sbjct: 227 EEKFIELMKGMAEIMGPKNISSPDIRVDCISDNILEAIRNYTI--GWIFFGLESGSDRVL 284

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           K M +  TA +  + +         +  +  FIVG+PGET++D+  T D +        F
Sbjct: 285 KKMGKGATANQAAEAVAACHE--HGLKAAGSFIVGYPGETEEDYEMTKDFITMNQLDDVF 342

Query: 364 SFKYSPRLGTPGSNMLEQVDENV 386
                P   TP ++++ +  +  
Sbjct: 343 ISIAEPIPKTPLADLVLRTPDEE 365


>gi|237803859|ref|ZP_04591444.1| ribosomal protein S12 methylthiotransferase [Pseudomonas syringae
           pv. oryzae str. 1_6]
 gi|237805467|ref|ZP_04592171.1| ribosomal protein S12 methylthiotransferase [Pseudomonas syringae
           pv. oryzae str. 1_6]
 gi|331025839|gb|EGI05895.1| ribosomal protein S12 methylthiotransferase [Pseudomonas syringae
           pv. oryzae str. 1_6]
 gi|331026574|gb|EGI06629.1| ribosomal protein S12 methylthiotransferase [Pseudomonas syringae
           pv. oryzae str. 1_6]
          Length = 141

 Score =  137 bits (344), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 39/141 (27%), Positives = 67/141 (47%), Gaps = 7/141 (4%)

Query: 335 FIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ-VDENVKAERLLC 393
           FIVGFPGET++DF+  +D + +    +   F+YSP  G P + +    V +++K +R   
Sbjct: 1   FIVGFPGETEEDFQYLLDWLTEAQLDRVGCFQYSPVEGAPANLLDAAIVPDDIKQDRWDR 60

Query: 394 LQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPWLQSVVL----NSKNHNI 447
                +    +     +G+ IEVLI++       G+    +P +   V     +  N   
Sbjct: 61  FMAHQQAISAARLQMKIGKEIEVLIDEVDDRGAVGRCFFDAPEIDGNVFIGLEDGSNVQP 120

Query: 448 GDIIKVRITDVKISTLYGELV 468
           GD I  R+TD     L+ E++
Sbjct: 121 GDKIMCRVTDADEYDLWAEML 141


>gi|150402967|ref|YP_001330261.1| radical SAM domain-containing protein [Methanococcus maripaludis
           C7]
 gi|150033997|gb|ABR66110.1| Radical SAM domain protein [Methanococcus maripaludis C7]
          Length = 369

 Score =  136 bits (342), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 74/365 (20%), Positives = 147/365 (40%), Gaps = 38/365 (10%)

Query: 46  DMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVV 105
              F +  E + ++D  ++++ +   ++EK   +V + +  ++ LK        D++++ 
Sbjct: 23  GSLFKEFSEIIENLDSLEILIYSFMSMQEK---EVLNEINELKKLKK-------DVILIA 72

Query: 106 AGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSI 165
            G       E+ L      ++++G      LP L+   + GK       S+E   + + I
Sbjct: 73  GGPHPSGCPEDTLN-MGFDHIIIGEGEIS-LPNLINSIKSGK-------SLEKIIKGIPI 123

Query: 166 VDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVCE 224
            +     K    A + I  GC   C FC  P   G     RS+  +V   + + D     
Sbjct: 124 ENFDNYEKIWPLAPIEITRGCPYNCRFCQTPQIFGKNIRHRSIESIVKIVKTMGD----- 178

Query: 225 ITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLI--KAHG 282
           I  +  N  ++  K   G K     L   +  +  + +  +  + P ++    +  +   
Sbjct: 179 IRFVTPNAFSYGSKT--GTKPDIEKLEKLMKSLFEIKKRLFFGTFPSEVRPEFVTFETLD 236

Query: 283 DLDVLM--PYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFP 340
            ++      Y+H   QSGSD +LK++ R H   +    ++  +    D+    DFI GFP
Sbjct: 237 LVNKYCDNRYIHFGAQSGSDEVLKNIRRGHLVSDVINAVETSKDC--DLIPKVDFIFGFP 294

Query: 341 GETDDDFRATMDLVDKI--GYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKL 398
            ET++  + T+DL+  I     +  +  +    GT          E ++ E L  L K  
Sbjct: 295 NETENQRKETIDLMKYIIKKNGKVHAHYFMSLCGT---YFENSTPEPLEKEILDTLGKMA 351

Query: 399 REQQV 403
           ++ Q+
Sbjct: 352 KKGQI 356


>gi|330720035|gb|EGG98468.1| tRNA-i(6)A37 methylthiotransferase [gamma proteobacterium IMCC2047]
          Length = 126

 Score =  136 bits (342), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 37/119 (31%), Positives = 67/119 (56%), Gaps = 2/119 (1%)

Query: 351 MDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACV 410
           M L++ IGY  +FSF YS R GTP + + ++  E VK +RL  LQ ++ +Q ++ +++ V
Sbjct: 1   MKLIETIGYDLSFSFIYSARPGTPAAELEDETPEEVKKQRLHILQTRITQQAMAISESMV 60

Query: 411 GQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLNSKNHNI-GDIIKVRITDVKISTLYGEL 467
           G +   L+     K+  KL GR+   + V+ + +   + G  + V IT+   +++ G L
Sbjct: 61  GSVQRTLVIGPSKKDPAKLQGRTENNRVVIFDPQGAQLEGKFVDVTITEALPNSMRGTL 119


>gi|126178881|ref|YP_001046846.1| radical SAM domain-containing protein [Methanoculleus marisnigri
           JR1]
 gi|125861675|gb|ABN56864.1| Radical SAM domain protein [Methanoculleus marisnigri JR1]
          Length = 369

 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 79/318 (24%), Positives = 120/318 (37%), Gaps = 27/318 (8%)

Query: 80  VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL 139
               +  I          G D + +V G  A A   E+   +  V V  G  T   L   
Sbjct: 40  TIYSINSINERIYRDEIVGADCITIVGGPHASACYREVAEYADYVVVGEGEYTLPALLSA 99

Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           +E  R     V T         R +++  GY     +  F+ I  GC   C +C  P   
Sbjct: 100 IEEGRDPPPGVATAAGY--TPARHTVLLDGYPPFSRIKGFVEITRGCPFSCGYCQTPRLF 157

Query: 200 GI-EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL---- 254
           G     RS+ ++V  A +       +I  +  N  A+   G+         LL SL    
Sbjct: 158 GRCMRHRSIDEIVRYASR-----YRDIRFVTPNAFAYGSDGVHLRLDKVERLLRSLKGRV 212

Query: 255 --SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
                 G VR    +    ++   ++    +       LH   QSGSDR+L+ ++R HT 
Sbjct: 213 YFGTFPGEVRPECISQQSVEL---VLDTCANTR-----LHFGAQSGSDRVLRHLHRGHTV 264

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI-GYAQAFSFKYSPRL 371
            +  +  D  R     +    DFI+G P E+DDD RAT+DLV  +    +A    + P  
Sbjct: 265 EDVVRAFDLCRE--HGLVPVVDFILGLPFESDDDQRATLDLVKMVTRGGKAHIHYFMPLP 322

Query: 372 GTPG--SNMLEQVDENVK 387
           GTP   +     + E  K
Sbjct: 323 GTPLQNARPRPLLPETKK 340


>gi|15669680|ref|NP_248493.1| hypothetical protein MJ_1487 [Methanocaldococcus jannaschii DSM
           2661]
 gi|38258708|sp|Q58882|Y1487_METJA RecName: Full=Uncharacterized methyltransferase MJ1487
 gi|1592124|gb|AAB99497.1| conserved hypothetical protein [Methanocaldococcus jannaschii DSM
           2661]
          Length = 426

 Score =  135 bits (341), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 66/362 (18%), Positives = 130/362 (35%), Gaps = 33/362 (9%)

Query: 53  YERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQA 112
           +     +   D +V+           +++     I  LK         ++ +  G     
Sbjct: 46  FNLKEVLKKYDKVVIAISFFTT----ELWKTYELINELKAKYQSYRNKIIYLAGGPHPTG 101

Query: 113 EGE-EILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFE---RLSIVD- 167
           + +  +     +V +  G +T+    + +      K+V    Y  +++F    R   VD 
Sbjct: 102 DPKGTLKLGFDVVCIGEGEETFPEFIKAVNEDEDYKKVKGIAYLNDNEFIYTGRRKPVDL 161

Query: 168 ---GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI-EISRSLSQVVDEARKLIDNGVC 223
                +  K      + I  GC   C FC  P   G     R +  +      + +  + 
Sbjct: 162 NKYPPFPVKHNKFGHIEITRGCPYKCYFCQTPRIFGKKIRHRDVENIYKYVEIMAERNLK 221

Query: 224 EITLLGQN-VNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM--------S 274
           +I  +  N        G          LL S+ EI G     +  + P ++        +
Sbjct: 222 DIRFITPNAFGYGSKDGKTLNIDKIEKLLESIREILGNNGRIFFGTFPSEVRPEHVNIET 281

Query: 275 DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSD 334
             LI  + D   L+    +  QSGS+++L+  +R HT  +    +   R     + +  D
Sbjct: 282 VDLILRYADNKNLV----IGAQSGSEKVLELCHRGHTVEDVYNAVRVARKA--GLGVDVD 335

Query: 335 FIVGFPGETDDDFRATMDLVDKIGY--AQAFSFKYSPRLGTPGSNM-LEQVDENVKAERL 391
           FI G PGET++D   T+ ++  +    A+  +  + P   TP +     +VD+ +   R 
Sbjct: 336 FIFGLPGETEEDVEKTIKVMKDLIKMGAKIHAHTFMPLPQTPFAKANPGKVDKKII--RA 393

Query: 392 LC 393
           + 
Sbjct: 394 MR 395


>gi|256811095|ref|YP_003128464.1| Radical SAM domain protein [Methanocaldococcus fervens AG86]
 gi|256794295|gb|ACV24964.1| Radical SAM domain protein [Methanocaldococcus fervens AG86]
          Length = 426

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 72/394 (18%), Positives = 135/394 (34%), Gaps = 43/394 (10%)

Query: 53  YERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQA 112
           +   N +   D +V+           +++     I  LK         ++ +  G     
Sbjct: 46  FNLENILKKYDKVVIAISFFTT----ELWKTYELINELKAKYKNYRSKIIYLAGGPHPTG 101

Query: 113 EGE-EILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVD---- 167
           + +  +     +V +  G +++    +++      ++V    Y  E+ F           
Sbjct: 102 DPKGTLKLGFDVVCIGEGEESFPEFIKVVNENEDYRKVKGIAYLEENNFIYTGKRKCVDL 161

Query: 168 ---GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI-EISRSLSQVVDEARKLIDNGVC 223
                +  K      + I  GC   C FC  P   G     RS+  +      + +  + 
Sbjct: 162 NKYPPFPIKHNKFGHIEITRGCPYSCYFCQTPRIFGKNVRHRSIENICKYVEIMAERNLK 221

Query: 224 EITLLGQN-VNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT--------TSHPRDMS 274
           +I  +  N        G          LL ++ EI G     +           H  D +
Sbjct: 222 DIRFITPNAFGYGSKDGKTLNIDKIEKLLENIREILGKDGRIFFGTFPSEVRPEHVNDET 281

Query: 275 DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSD 334
             LI  + D   L+    +  QSGS RIL   NR HT  +    ++   +++  +++S D
Sbjct: 282 VDLILKYADNKNLV----IGAQSGSQRILDLCNRGHTVEDIYNAVNT--AIKKGVSVSLD 335

Query: 335 FIVGFPGETDDDFRATMDLVDKIGY--AQAFSFKYSPRLGTPGSNMLEQVDENVKAERLL 392
           FI G PGET++D   T+ ++  +    A+  +  + P   TP +     V          
Sbjct: 336 FIFGLPGETEEDVEKTIKVMKDLIKMGAKIHAHAFMPLPQTPFAKAKPGVVNK------- 388

Query: 393 CLQKKLREQQVSFNDA-CVGQ--IIEVLIEKHGK 423
              K +R  +         G     ++L EK  K
Sbjct: 389 ---KIIRAMRYEIPKGIFYGTWHNQQILAEKISK 419


>gi|124485623|ref|YP_001030239.1| hypothetical protein Mlab_0801 [Methanocorpusculum labreanum Z]
 gi|124363164|gb|ABN06972.1| Radical SAM domain protein [Methanocorpusculum labreanum Z]
          Length = 366

 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 82/360 (22%), Positives = 121/360 (33%), Gaps = 44/360 (12%)

Query: 49  FSQGY--ERVNSM-DDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVV 105
              GY  E V+S  D  D+I                  L  +   K     +  + + +V
Sbjct: 23  EKYGYILEPVDSPADGGDVI---------------CYSLNSLDYPKYVDEIKSAEQITIV 67

Query: 106 AGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSI 165
            G    A   E+   +  V V  G +T  RL   LER     ++    +           
Sbjct: 68  GGPHPSACPNEVSLIADYVVVGEGERTLPRLLAALERGEDATKIPGVAFRGSAPIPIDHA 127

Query: 166 VD-GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI-EISRSLSQVVDEARKLIDNGVC 223
           V    +     +  ++ +  GC   C +C  P   G     RS   +V  A K  D    
Sbjct: 128 VRLDAFPSFSRMKGYIELSRGCPFSCAYCQTPCLHGRKMRHRSREAIVSMAEKYQDARF- 186

Query: 224 EITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK------GLVRLRYTTSHPRDMSDCL 277
                    NA+     DG       L   LS +       G              +  L
Sbjct: 187 ------VTPNAFAYGSADGRVPDVEKLRRLLSSMPKNNIYFGTFPSEVRPEFVIQETAEL 240

Query: 278 IKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIV 337
           I        L    H   QSGSD +L+ M R HT  +    ++  + V   +    D I 
Sbjct: 241 ITEFCSNTKL----HFGAQSGSDAVLRKMGRGHTVVDVYSALETCKKV--GLTPVVDVIF 294

Query: 338 GFPGETDDDFRATMDLVDKI-GYAQAFSFKYSPRLGTP--GSNMLEQVDENVKAERLLCL 394
           GFP  +D+D  AT+ LV ++  Y  A     +P  GTP  GS   + + E    +RL  L
Sbjct: 295 GFPFASDEDEEATLSLVREVTRYGTAHVHYLTPLPGTPLEGSTPRDILPE--VDKRLGQL 352


>gi|240103836|ref|YP_002960145.1| Radical SAM protein, elongator protein 3/MiaB/NifB related
           [Thermococcus gammatolerans EJ3]
 gi|239911390|gb|ACS34281.1| Radical SAM protein, elongator protein 3/MiaB/NifB related
           [Thermococcus gammatolerans EJ3]
          Length = 424

 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 79/426 (18%), Positives = 149/426 (34%), Gaps = 63/426 (14%)

Query: 43  RMEDMFFSQGYERVNSMDDADL---------IVLNTCHIREKAAEKVYSFLGRIRNLKNS 93
            +     SQG++    +   D          +VL +    E    +++  L R   L   
Sbjct: 18  HLLGALESQGFDLSELLITKDFKEILRARPKVVLYS-FFTE----EIWGNLPREVQLLKE 72

Query: 94  RIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVD-- 151
                   L+V  G  A A  +  L +      VVG         L    R G R+    
Sbjct: 73  -----RGALLVAGGYHAIAMPKHTLNQLGFDIAVVGEGEEVLYNLLTTLKRTGYRITPEL 127

Query: 152 ----------------TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
                           T ++  + F R             + + + I  GC   C +C  
Sbjct: 128 AKIRGLAFRLNGEFTFTGFAKVEDFWRFPPYPESVR----LISPIEISRGCPFRCYYCQT 183

Query: 196 PYTRG-IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL 254
           PY +G     R + Q+V  +R++      ++  +  N  A+   G   +      LL +L
Sbjct: 184 PYIKGFRMRHRPIDQIVHYSRRM-----KDMRYITPNAFAYGSPGAILKLNKLEALLRAL 238

Query: 255 SEIKGLVRLRYTTSHPRDM--------SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306
             ++   R  +  + P ++        +  L+  + D   L     +  QSG D +LK+M
Sbjct: 239 QPLRKEGRRLFYGTFPSEVRPEFVLPETLELLIDYADNRRLA----IGAQSGDDAMLKAM 294

Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI--GYAQAFS 364
           +R H     ++ ++ +           DFIVG P ET +  R +++L++ I     +  +
Sbjct: 295 HRLHRVEHVKRAVEYMVEY--GFEPVVDFIVGLPNETAESQRKSIELMEWIMRKGGKVRA 352

Query: 365 FKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE 424
             + P  GTP +              L  +  + + +        + + ++ LIE+  +E
Sbjct: 353 HYFMPLPGTPWARCKPSPLSEEMKRFLGRMAARGKIEGSWGIQIELSKRLQKLIEEFYEE 412

Query: 425 KGKLVG 430
                G
Sbjct: 413 PMSYHG 418


>gi|303244458|ref|ZP_07330793.1| Radical SAM domain protein [Methanothermococcus okinawensis IH1]
 gi|302485156|gb|EFL48085.1| Radical SAM domain protein [Methanothermococcus okinawensis IH1]
          Length = 447

 Score =  134 bits (338), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 65/315 (20%), Positives = 114/315 (36%), Gaps = 14/315 (4%)

Query: 80  VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG------PQTY 133
           +   L ++  L  +  K       +  G    A  E +L    +  V++G      P+  
Sbjct: 64  MDKNLKKVIELLQNNNKHNSKKTKIFVGGPVSAYPEIVLNELNVDGVILGEGEIITPKII 123

Query: 134 YRLPELLERARFGKRVVDTDYSVE--DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCT 191
               E L     G+ +++        D  + L   D G    RG   ++    GC   CT
Sbjct: 124 EGDKEGLAYLENGEIIINKPKPKPKLDFSKPLIPKDIGAQSIRGANVYIETHRGCIGNCT 183

Query: 192 FCVVPYTRGI-EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDL 250
           FC VP   G    S+ L  +++E ++    GV  I + G    +      +  K  F +L
Sbjct: 184 FCQVPKFFGKDIRSKPLELILEEVKEFKKKGVKRIAISGG-TGSLYNFKKEVNKSMFIEL 242

Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
           L  +S I G   L         +    + A     +   ++   ++SGSD+ILKSM +  
Sbjct: 243 LEKVSRIIGNKNLSVPDMRVDYVDRDTLTAVKKYTI--GWVFYGIESGSDKILKSMKKGT 300

Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370
              +    ++  +     + +   FIVG P E + D+  T D +        F     P 
Sbjct: 301 NREKNLNAVNLAKEC--GVKVGGSFIVGHPEEKEVDYLLTKDFIVDAELDDVFVSIAEPI 358

Query: 371 LGTPGSNMLEQVDEN 385
             T   +++      
Sbjct: 359 PKTELCDLILDTPIE 373


>gi|57641347|ref|YP_183825.1| hypothetical protein TK1412 [Thermococcus kodakarensis KOD1]
 gi|57159671|dbj|BAD85601.1| hypothetical protein, conserved, radical SAM superfamily fused to
           B12-binding domain [Thermococcus kodakarensis KOD1]
          Length = 424

 Score =  134 bits (337), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 77/435 (17%), Positives = 151/435 (34%), Gaps = 90/435 (20%)

Query: 43  RMEDMFFSQGYERVNSMDDADL---------IVLNTCHIREKAAEKVYSFLGRIRNLKNS 93
            +     SQG++    +   D          +VL +    E+    +   +  ++     
Sbjct: 18  HLLGALESQGFDLGELLITKDFNEILRAKPKVVLYS-FFTEEIWGSLRDEIRLLKE---- 72

Query: 94  RIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV---- 149
                   L+V  G  A A  +  L        V+G         L    + G R+    
Sbjct: 73  -----RGALLVAGGYHAIAMPKHTLNVLGFDIAVIGEGEEVLYQLLTTLKKTGYRITKEL 127

Query: 150 --------------VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
                         V T ++  + F R             + + + I  GC   C +C  
Sbjct: 128 ANITGLAFYLNGDFVFTGFAKVENFWRFPPYPESVR----LISPIEITRGCPFGCYYCQT 183

Query: 196 PYTRG-IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL 254
           PY +G     R + Q+V  ++++      ++  +  N  A+   G   +      LL +L
Sbjct: 184 PYIKGFRMRHRPIDQIVKYSKRM-----KDMRYITPNAFAYGSPGAILKLDKLEALLKAL 238

Query: 255 SEIKGLVRLRYTTSHPRDM--------SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306
             ++   R  +  + P ++        +  L+  + D   L     +  QSG D +LK+M
Sbjct: 239 QPLRKEGRRLFYGTFPSEVRPEFVLPETLELLIDYADNRRLA----IGAQSGDDAMLKAM 294

Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI--GYAQAFS 364
           +R H     ++ ++ +           DFIVG P ET +  R +++L+  I     +  +
Sbjct: 295 HRLHRVEHVQRAVEYMLEY--GFEPVVDFIVGLPNETRESQRKSIELMKWIMAKGGKVRA 352

Query: 365 FKYSPRLGTPGSN-MLEQVDENVKA----------------------ERLLCLQKKLREQ 401
             + P  GTP S      + + +K                        RL  L ++  E+
Sbjct: 353 HYFMPLPGTPWSRCRPSPLSDEMKKFLGRMAAKGKIEGSWGKQIELSRRLQRLIEEFYEE 412

Query: 402 QVSFNDACVGQIIEV 416
            ++++    G++ EV
Sbjct: 413 PMAYH----GRVREV 423


>gi|217967140|ref|YP_002352646.1| radical SAM protein [Dictyoglomus turgidum DSM 6724]
 gi|217336239|gb|ACK42032.1| Radical SAM domain protein [Dictyoglomus turgidum DSM 6724]
          Length = 405

 Score =  134 bits (337), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 67/306 (21%), Positives = 121/306 (39%), Gaps = 27/306 (8%)

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           ++ +K        ++ ++  G  A  +    L+     ++VV  +     PE+++R   G
Sbjct: 72  LKRIKEKIE----NVKIIAGGPHASGDPYSTLKI--GADIVVVGEGEKIFPEIIKRIISG 125

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI-EISR 205
           + V    +  E   +           KR     + I  GC   C FC  P   G     R
Sbjct: 126 EDVKGI-FKGESFVKLDDYFPFSLRFKR--FGPIEISRGCPYGCYFCQTPRIFGGVMRHR 182

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRG-KGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           S  +++D  + +    + +I  +  N  A+    G D       +LLY +  I G     
Sbjct: 183 STEKILDIVKIMNKLNLKDIRFITPNAFAYGSLTGKDVNLRRLEELLYGIRNIIGDKGRI 242

Query: 265 YTTS--------HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           +  S        H R+    L+K + D D L+    +  QSGS RIL   +R HT  +  
Sbjct: 243 FFGSFPSEVRPEHVREEILELLKTYADNDNLV----IGAQSGSQRILDLAHRGHTVEDVY 298

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY--AQAFSFKYSPRLGTP 374
           + +    ++R  +  + DFI G P E + D   T+  ++++    A+  +  + P  GTP
Sbjct: 299 RAVSL--TLRYGLKANVDFIFGLPYEEERDIEETLKFIEELVKMGARVHAHTFMPLPGTP 356

Query: 375 GSNMLE 380
            +    
Sbjct: 357 FAKFPP 362


>gi|260891279|ref|ZP_05902542.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Leptotrichia hofstadii
           F0254]
 gi|260858955|gb|EEX73455.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Leptotrichia hofstadii
           F0254]
          Length = 122

 Score =  134 bits (337), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 47/120 (39%), Positives = 68/120 (56%), Gaps = 2/120 (1%)

Query: 351 MDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACV 410
           MD+V+++G+  AF F YS R GTP + M EQVDE +K ERL  L +    +    +   +
Sbjct: 1   MDVVNEVGFENAFMFMYSKRTGTPAATMGEQVDEQIKNERLQQLMRLQNMKAKEESQKYL 60

Query: 411 GQIIEVLIEKHGKEKGK-LVGRSPWLQSVVLNSK-NHNIGDIIKVRITDVKISTLYGELV 468
           G+I++VL+E   ++  + L GRS   + V+  S      G  +  RI D K  TLYGELV
Sbjct: 61  GKIVKVLVEGPSRKNPEMLTGRSSTHKIVLFKSDRKDLKGKFVNTRIYDAKTWTLYGELV 120


>gi|18978095|ref|NP_579452.1| hypothetical protein PF1723 [Pyrococcus furiosus DSM 3638]
 gi|18893890|gb|AAL81847.1| hypothetical protein PF1723 [Pyrococcus furiosus DSM 3638]
          Length = 425

 Score =  133 bits (335), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 75/371 (20%), Positives = 144/371 (38%), Gaps = 61/371 (16%)

Query: 93  SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF------- 145
            +I++  + ++V  G  A A  +  L+       V+G +    L +LL + R        
Sbjct: 68  EKIRKNINAILVAGGYHAIAMPKHTLKVLGFDIAVIG-EGEEALYDLLTKLRKTNYTITK 126

Query: 146 ------------GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC 193
                       G   V T ++  + F +      G      + + + I  GC   C +C
Sbjct: 127 DLTEVRGLAFYLGDEFVFTGFAKVEDFWKFPPYPEGLK----LISPMEISRGCPFGCYYC 182

Query: 194 VVPYTRG-IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLY 252
             PY +G     R + Q+V  ++++      ++  +  N  A+   G   +      LL 
Sbjct: 183 QTPYAKGFRMRHRPIDQIVKYSKRM-----KDMRYITPNAFAYGSPGGILKIEKVEALLR 237

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLH-----LPVQSGSDRILKSMN 307
           +L  ++   R  +  + P ++    +     +++L+ Y       +  QSG D++LK+M+
Sbjct: 238 ALQPLRREGRRLFYGTFPSEVRPEFVTRE-TVELLVKYTDTKRLAIGAQSGDDKMLKAMH 296

Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI--GYAQAFSF 365
           R H        ++   S+   I    DFIVG PGET++  R +++L+  I     +  + 
Sbjct: 297 RVHRVEHVINAVEL--SLEYGITPVVDFIVGLPGETEEMQRKSIELMKWIIKKGGKVRAH 354

Query: 366 KYSPRLGTPGSN-MLEQVDENVKA-------------------ERLLCLQKKLREQQVSF 405
            + P  GTP +      + E +K                    E    LQK + E     
Sbjct: 355 YFMPLPGTPWAKCKPSPLSEEMKKFLGRMAAEGKIEGAWGIQIETSRKLQKLIEEFYEEP 414

Query: 406 NDACVGQIIEV 416
             + VG++ E+
Sbjct: 415 F-SYVGKVKEI 424


>gi|294496416|ref|YP_003542909.1| radical SAM protein [Methanohalophilus mahii DSM 5219]
 gi|292667415|gb|ADE37264.1| Radical SAM domain protein [Methanohalophilus mahii DSM 5219]
          Length = 367

 Score =  133 bits (334), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 81/352 (23%), Positives = 133/352 (37%), Gaps = 27/352 (7%)

Query: 53  YERVNSMDDADLIVL--NTCHIREKAA--EKVYSFLGRIRNLKNSRIKEGGDLLVVVAGC 108
           + R NS   A L  L  N   +R              + R++         D + +  G 
Sbjct: 7   WNRKNSYSLATLYPLLENAGFVRHPVDGIMVYSFSTAQKRSIFTEVSSSNTDSVYIAGGP 66

Query: 109 VAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLS---- 164
                 EE L     V +  G +T  +L + L+      +V    Y   D     S    
Sbjct: 67  HPSGSVEETLGFFDYVVIGEGEETLPQLVDTLQMGGDVSKVAGIAYKTNDNIVHTSARQP 126

Query: 165 --IVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG-IEISRSLSQVVDEARKLIDNG 221
             + D       G  + + I  GC   C +C  P   G     RS+  +V  AR   D  
Sbjct: 127 VNLDDYPCFDCEGPRSPIEISRGCPWNCKYCQTPRLFGHKMRHRSIDSIVRYARCYND-- 184

Query: 222 VCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLI--K 279
              +     N  A+ G G+         LL  L++ +G  +  Y  + P ++    +   
Sbjct: 185 ---LRFTSSNAFAYGGDGIHPRLDKVEKLLACLAKFEG--KNIYFGTFPSEVRPEFVSED 239

Query: 280 AHGDLDVLM--PYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIV 337
           A   ++       + L  QSGSDRIL+ + R H++ +    ++        I    DFI 
Sbjct: 240 ALELVNKYCTNKSISLGGQSGSDRILRQIRRGHSSEDISHAVEHCVDKA--IVPMVDFIF 297

Query: 338 GFPGETDDDFRATMDLVDKI--GYAQAFSFKYSPRLGTPGSNM-LEQVDENV 386
           GFPGET++D R T+D+++ I     +  +   +P   TP  NM    ++ +V
Sbjct: 298 GFPGETEEDQRMTLDMINWIISKGGKVRAHYLTPLPSTPYENMVPAPIEPDV 349


>gi|73668263|ref|YP_304278.1| Fe-S oxidoreductase [Methanosarcina barkeri str. Fusaro]
 gi|72395425|gb|AAZ69698.1| Fe-S oxidoreductase [Methanosarcina barkeri str. Fusaro]
          Length = 377

 Score =  132 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 72/324 (22%), Positives = 120/324 (37%), Gaps = 31/324 (9%)

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            +   +       G D + +  G       EE L     V +  G +T   L  +++   
Sbjct: 43  RQAAKVFTEVKNAGTDSIFIAGGPHPSGAPEETLEYFDYVVIGEGEETLPELVGMIQEKG 102

Query: 145 FGKRVVDTDY----------SVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCV 194
             ++V    Y          + +  +  L         K  + A + I  GC   C +C 
Sbjct: 103 DPRKVPGIAYRDVKTGKVARTPKRPYANLDSYPCFDPHK--LRAPIEISRGCPWGCKYCQ 160

Query: 195 VPYTRGIE-ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS 253
            P   G E   RS+  +V  A    D     +  +  N     G G DG    F  +   
Sbjct: 161 TPRLFGREVRHRSVDSIVKNAGYYND-----LRFIASNA---FGYGSDGIHPRFDKVEKL 212

Query: 254 LSEIKGLV-RLRYTTSHPRDMSDCLI--KAHGDLDVLM--PYLHLPVQSGSDRILKSMNR 308
           LS +  L  +  +  + P ++    +  ++   +        L L  QSGSDRILK ++R
Sbjct: 213 LSALHKLPDKKIFFGTFPSEVRPEFVTDESVELVRKYCANNSLSLGAQSGSDRILKEIHR 272

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI--GYAQAFSFK 366
            HT  +    ++        I  + DFI G P E ++D   ++DLV  I        +  
Sbjct: 273 GHTVRDSISAVECCLE--HGIVPAVDFIFGLPTEAEEDQEKSLDLVRWICKKGGTVRAHY 330

Query: 367 YSPRLGTP-GSNMLEQVDENVKAE 389
            +P  GTP  S +  +V + V+ E
Sbjct: 331 LTPLPGTPYASAVPSEVSDRVRRE 354


>gi|195388802|ref|XP_002053067.1| GJ17100 [Drosophila virilis]
 gi|194151153|gb|EDW66587.1| GJ17100 [Drosophila virilis]
          Length = 283

 Score =  132 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 44/152 (28%), Positives = 79/152 (51%), Gaps = 1/152 (0%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +R   + YGCQMN  D+  +  +    GY+R     +AD+++L TC +R+ A +K+++ L
Sbjct: 101 RRVHFEVYGCQMNTNDTEVVWSILQKHGYQRCEDAANADVVMLVTCAVRDGAEQKIWNRL 160

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             +R LK  R  +   L + + GC+A+   E +L +   V+V+ GP +Y  LP LL  AR
Sbjct: 161 RHLRALKERRGTKRQPLQLTILGCMAERLKERLLEQEQCVDVIAGPDSYKDLPRLLAVAR 220

Query: 145 F-GKRVVDTDYSVEDKFERLSIVDGGYNRKRG 175
             G   ++   S+++ +  +  V    +    
Sbjct: 221 HYGNSAINVLLSLDETYADVMPVRLSSDSPTP 252


>gi|20089140|ref|NP_615215.1| hypothetical protein MA0242 [Methanosarcina acetivorans C2A]
 gi|19914008|gb|AAM03695.1| conserved hypothetical protein [Methanosarcina acetivorans C2A]
          Length = 373

 Score =  132 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 75/321 (23%), Positives = 120/321 (37%), Gaps = 28/321 (8%)

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           +   +         D + +  G       EE L     V +  G +T   L ++L+    
Sbjct: 44  QAAKIFREIENVETDSIFIAGGPHPSGSPEETLEYFDYVVIGEGEETLPELVKVLKEGGN 103

Query: 146 GKRVVDTDYS-----VEDKFERLSIVDGGYN--RKRGVTAFLTIQEGCDKFCTFCVVPYT 198
              V    Y      + +  ER  +    Y     + + A + I  GC   C +C  P  
Sbjct: 104 PGEVKGIAYKSDTCRIIETPERQHVNLDAYPCFDPKRLRAPIEISRGCPWGCRYCQTPRL 163

Query: 199 RGIE-ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257
            G E   RS+  V+  AR   D     +  +  N  A+   G+         LL +L E+
Sbjct: 164 FGREVRHRSIDSVLKNARYYDD-----LRFIASNAFAYGSDGIHPRFDKVEKLLSALHEL 218

Query: 258 K------GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
                  G            + S  L++ +   D     L L  QSGSDR+LK + R HT
Sbjct: 219 PDKKIFFGTFPSEVRPEFVTEESVELVRKYCAND----SLSLGAQSGSDRVLKEIRRGHT 274

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI--GYAQAFSFKYSP 369
             +    ++       +IA + DFI G P ET++D   +++LV  I        +   +P
Sbjct: 275 VEDSISAVECCLE--HEIAPAVDFIFGLPTETEEDQEKSLELVRWICKKGGTVRAHYMTP 332

Query: 370 RLGTP-GSNMLEQVDENVKAE 389
             GTP  S +  +V   V+ E
Sbjct: 333 LPGTPYASAVPSKVSNRVRRE 353


>gi|239617821|ref|YP_002941143.1| Radical SAM domain protein [Kosmotoga olearia TBF 19.5.1]
 gi|239506652|gb|ACR80139.1| Radical SAM domain protein [Kosmotoga olearia TBF 19.5.1]
          Length = 389

 Score =  131 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 87/386 (22%), Positives = 133/386 (34%), Gaps = 46/386 (11%)

Query: 38  VYDSLRM-EDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIK 96
             D   + E  F +  Y   +      +I L+      K  EK+   L    N       
Sbjct: 26  EVDVEVIGESEFINANYIGSDDA----IIALSFMSPEAKKNEKLIRKLSSAGN------- 74

Query: 97  EGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSV 156
                 V+V G  A A+ EEIL       V VG         LL                
Sbjct: 75  -----RVIVGGPHASAKPEEILGMGAYA-VFVGEGERTLRKFLLN--------PTPGIWY 120

Query: 157 EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG-IEISRSLSQVVDEAR 215
            +K ++L      ++ K    + + I  GC   C +C  P   G     RS+  ++  AR
Sbjct: 121 GEKLQQLDTFP-PFSLKHEFFSPMEISRGCPFGCNYCQTPRIFGRRVRHRSVENILHFAR 179

Query: 216 KLIDNGVCEITLLGQN-VNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMS 274
           + ++ G      +  N        G+        +LL  + +I   +R  Y  S P D+ 
Sbjct: 180 ESVERGRKVARFITPNAFGYGSKNGVTPNTKVIYELLSGMRKIG--MREVYFGSFPSDVR 237

Query: 275 DCLI--KAHGDLDVLM--PYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330
              +       +        + + +QSGSDRILK +NR H        I +I        
Sbjct: 238 PESVSDDVLAIVQEFCDNKVIVVGLQSGSDRILKQLNRGHDVQTAINTIRKISRY--GFT 295

Query: 331 ISSDFIVGFPGETDDD----FRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
              D I GFP E D D    F     L +K G A      + P  GTP  N+  ++    
Sbjct: 296 PYVDMIFGFPFEEDSDIEKSFEVAYYLYEKYG-AVIHGHTFMPLPGTPFENLKSKLSSKT 354

Query: 387 KAE--RLLC--LQKKLREQQVSFNDA 408
             E  RL    + K   + Q++ +  
Sbjct: 355 LRELGRLSAKGIMKGQWQNQITISQE 380


>gi|88603413|ref|YP_503591.1| radical SAM family protein [Methanospirillum hungatei JF-1]
 gi|88188875|gb|ABD41872.1| Radical SAM [Methanospirillum hungatei JF-1]
          Length = 444

 Score =  131 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 71/364 (19%), Positives = 146/364 (40%), Gaps = 30/364 (8%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGY--ERVNSMDD--ADLI---VLNTCHIREKAAEKVY 81
           + +YG       ++R+  +    G+  +   ++     D +   + +T H+ + A ++V 
Sbjct: 15  LYTYG-------AMRIGGIIRDAGFHPQITRNISQIHGDQVFLSLFSTLHLLDPAVKEVV 67

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPI--VNVVV---GPQTYYRL 136
             + +    K      GG +       + +   + ++       V  ++   G QT +  
Sbjct: 68  KRIQQ----KGGECIIGGPVSSGPEMVLGELHPDLVVCGEGEEAVRCILDRTGDQTDHAD 123

Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRK--RGVTAFLTIQEGCDKFCTFCV 194
                    G+ +       +D    L ++      +  RG   ++    GC   C FC 
Sbjct: 124 CPNCAYIEDGRVIKTEQKRAQDLSFPLPLIPDDIAAQDIRGAQTYIETHRGCFGRCGFCQ 183

Query: 195 VPYTRGI-EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS 253
           VP   G    SR L +++ E +     GV  + L+G   + +R K  +     F  LL  
Sbjct: 184 VPRVFGRRIRSRELDEILKEVKAFQKKGVRRLALIGGTGSLYRSKEGEVNSDAFISLLEG 243

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
           +S I G   +         ++D +++A     +   ++   ++SGS+++L  M +     
Sbjct: 244 ISSIMGPKNVSCPDIRADCLTDEVLEAVRAHTI--GWIFFGIESGSEKMLGLMQKGIPID 301

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
           + R  I++ R     +  +  FI G+PGE ++DF+AT DL++++     F     P   T
Sbjct: 302 KVRDAIEQCRQY--GVKPAGSFITGYPGEEEEDFQATKDLMEELTLDDVFISIAEPIPST 359

Query: 374 PGSN 377
           P + 
Sbjct: 360 PLAE 363


>gi|330896113|gb|EGH28334.1| ribosomal protein S12 methylthiotransferase [Pseudomonas syringae
           pv. japonica str. M301072PT]
          Length = 169

 Score =  131 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 50/186 (26%), Positives = 78/186 (41%), Gaps = 19/186 (10%)

Query: 17  IVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA 76
            V     P+  FV S GC   + DS R+      +GYE V + +DAD++V+NTC   + A
Sbjct: 3   TVTTPSAPKVGFV-SLGCPKALVDSERILTQLRMEGYEVVATYEDADVVVVNTCGFIDTA 61

Query: 77  AEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL 136
             +    +G         IKE G   V+V GC+   +   I    P V  V GPQ Y ++
Sbjct: 62  KAESLEVIGEA-------IKENG--KVIVTGCMG-VDASVIRNVHPSVLSVTGPQQYEQV 111

Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
              +      ++  +    +        +   G        A+L I EG +   +FC++P
Sbjct: 112 VNAVHDVVPPRKDHNPLIDL--------VPPQGVKLTPRHYAYLKISEGGNHSGSFCIIP 163

Query: 197 YTRGIE 202
             RG  
Sbjct: 164 SMRGKL 169


>gi|296108791|ref|YP_003615740.1| Radical SAM domain protein [Methanocaldococcus infernus ME]
 gi|295433605|gb|ADG12776.1| Radical SAM domain protein [Methanocaldococcus infernus ME]
          Length = 437

 Score =  131 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 80/378 (21%), Positives = 146/378 (38%), Gaps = 45/378 (11%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGY--ERVNSMD-----DADLIVLN---TCHIREKAAE 78
           + +YG       S+ +  +   + Y    +   D      +D+I+ +   T HI +    
Sbjct: 10  IYTYG-------SMLVGGILKEK-YKVHLIRKPDNILFLKSDVIIFSLYSTLHIIDNKIR 61

Query: 79  KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPE 138
           ++ +F+ R                + VAGC+     E IL    +  V++G       P 
Sbjct: 62  ELINFIKRA----------NKKAKLYVAGCI-STYPEIILNELNVDGVIIGEGEIT-TPR 109

Query: 139 LLERARFGKRV-----VDTDYSVE----DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKF 189
           +LE    G        +  +Y  E    D    L   D G    RG   ++    GC   
Sbjct: 110 ILEGDEEGLAYREGDNIIVNYPKEKPSLDHPLPLIPKDIGEQNIRGANVYIETHRGCLGN 169

Query: 190 CTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS 248
           CTFC VP   G E  SR +  VV+E ++    G   I + G    +         +  F 
Sbjct: 170 CTFCQVPKFFGKEIRSRDVELVVEEVKEFKKRGAKRIAISGG-TGSLYNFKKSVNREKFY 228

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
           +LL  LS I G   L         + + +++A  +  +   ++   ++SGSD++L+ M +
Sbjct: 229 ELLEKLSSIVGKSNLSVPDMRVDYVDEAILEAIKNYTI--GWVFYGIESGSDKVLRDMKK 286

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
                +    I   + +  ++ ++  FIVG+P ET+ D+  T D +        F     
Sbjct: 287 GVNTKKIMDAIKLAKDL--NVKVAGSFIVGYPTETEKDYLLTKDFIVDAELDDLFVSIAE 344

Query: 369 PRLGTPGSNMLEQVDENV 386
           P   T   +++ ++ +  
Sbjct: 345 PIPTTELCSLVLKIPKEE 362


>gi|14520689|ref|NP_126164.1| hypothetical protein PAB0314 [Pyrococcus abyssi GE5]
 gi|5457905|emb|CAB49395.1| Fe-S oxidoreductase family protein [Pyrococcus abyssi GE5]
          Length = 425

 Score =  131 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 80/421 (19%), Positives = 155/421 (36%), Gaps = 53/421 (12%)

Query: 43  RMEDMFFSQGYERVNSMDDADLIVLNTCHIRE-KAAEKVYSFLGRIRNLKNS--RIKEGG 99
            +     SQGY+  N +   D+  +    I+   +      +   +  +K     +K   
Sbjct: 19  HLLAALESQGYDLSNVLVTKDINEI----IKARPSVILYSFYSQEVDGVKREVEILKSKV 74

Query: 100 DLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV---------- 149
             + V  G  A A  +  LR       V+G         LL+    G +V          
Sbjct: 75  KAVFVAGGYHAIAMPKHTLRVLGFDIAVIGEGEEALYNLLLKLRGNGYKVTKDLTEVKGL 134

Query: 150 --------VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG- 200
                   V T ++  + F +      G      + + + I  GC   C +C  PY +G 
Sbjct: 135 AFYLGGDFVFTGFAKVEDFWKFPPYPEGLK----LISPMEISRGCPFGCYYCQTPYAKGF 190

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
               R + Q+V  +R++      ++  +  N  A+   G   +      LL +L  ++  
Sbjct: 191 RMRHRPIDQIVKYSRRM-----KDMRYITPNAFAYGSPGGILKIEKVEALLRALQPLRKE 245

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLH-----LPVQSGSDRILKSMNRRHTAYEY 315
            R  +  + P ++    +     +++L+ Y       +  QSG D +LK+M+R H     
Sbjct: 246 GRRLFYGTFPSEVRPEFVTRE-TIELLVDYTDTRRLAIGAQSGDDAMLKAMHRVHKVEHV 304

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI--GYAQAFSFKYSPRLGT 373
              ++        +    DFIVG P ET +  R +++L+  I     +  +  + P  GT
Sbjct: 305 VNAVELALEY--GLTPVVDFIVGLPNETPESQRKSIELMKWIMRKGGKVRAHYFMPLPGT 362

Query: 374 PGSN-MLEQVDENVKAERLLCLQKKLREQQVSFN---DACVGQIIEVLIEKHGKEKGKLV 429
           P +      + E +K      L +   E ++  +      + + ++ LIE+  +E     
Sbjct: 363 PWARCKPSPLSEEMKK----FLGRMAAEGKIEGSWGVQINISRRLQKLIEEFYEEPMSYH 418

Query: 430 G 430
           G
Sbjct: 419 G 419


>gi|154150867|ref|YP_001404485.1| radical SAM domain-containing protein [Candidatus Methanoregula
           boonei 6A8]
 gi|153999419|gb|ABS55842.1| Radical SAM domain protein [Methanoregula boonei 6A8]
          Length = 369

 Score =  131 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 76/330 (23%), Positives = 117/330 (35%), Gaps = 44/330 (13%)

Query: 54  ERVNSMDDADLIVLNTC-HIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQA 112
           + V   + AD+    TC  +   +  +    +             G   + +  G  A A
Sbjct: 30  QPVEKPE-ADV----TCYSLTSISVRRYRDEI------------AGAGCITIAGGPHATA 72

Query: 113 EGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERL--SIVDGGY 170
              E+   +  V V  G    Y LP LL     G        +  + +E +  S+    Y
Sbjct: 73  CWHEVAEYTDYVVVGEG---EYTLPALLADLEAGGSCRIPGVATREGYEPVKSSVRLDAY 129

Query: 171 NRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI-EISRSLSQVVDEARKLIDNGVCEITLLG 229
                V  ++ I  GC   C +C  P   G     RS+ ++   A     N   +   + 
Sbjct: 130 PAFSEVKGYVEISRGCPFACGYCQTPQIFGHCMRHRSIDEIAKYA-----NRYGQARFVS 184

Query: 230 QNVNAWRGKGLDGEKCTFSDLLYSLSEIK-----GLVRLRYTTSHPRDMSDCLIKAHGDL 284
            N  A+   G DG    F  +   L +IK     G            + S  LI  +   
Sbjct: 185 PNAFAY---GSDGIHPRFDKIERLLQKIKKEIFFGTFPSEVRPEFVCEKSLALISEYCTN 241

Query: 285 DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETD 344
             L    H   QSGSD +LK + R HT  +     +        I    DFIVGFP ETD
Sbjct: 242 TKL----HFGAQSGSDAVLKRLRRGHTVDDAIAAAELC--AVAGITPVIDFIVGFPFETD 295

Query: 345 DDFRATMDLVDKI-GYAQAFSFKYSPRLGT 373
           +D  AT+ ++  +    +    ++ P  GT
Sbjct: 296 EDQEATITVIKDLSRIGKIHVHRFIPLPGT 325


>gi|289191984|ref|YP_003457925.1| Radical SAM domain protein [Methanocaldococcus sp. FS406-22]
 gi|288938434|gb|ADC69189.1| Radical SAM domain protein [Methanocaldococcus sp. FS406-22]
          Length = 426

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 71/368 (19%), Positives = 131/368 (35%), Gaps = 39/368 (10%)

Query: 79  KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGE-EILRRSPIVNVVVGPQTYYRLP 137
           +++     I  LK+        ++ +  G     + +  +     +V +  G +T+  L 
Sbjct: 68  ELWKTYDLINELKSKYQNYRDKIIYLAGGPHPTGDPKGTLKLGFDVVCIGEGEETFPELI 127

Query: 138 ELLERARFGKRVVDTDYSVEDKFERLSIVDG-------GYNRKRGVTAFLTIQEGCDKFC 190
           + +      K+V    Y  ++KF                +  K      + I  GC   C
Sbjct: 128 KAVNENEDYKKVKGIAYLDDNKFIYTGKRKHVDLNKYPPFPVKHNKFGHIEITRGCPYGC 187

Query: 191 TFCVVPYTRGI-EISRSLSQVVDEARKLIDNGVCEITLLGQN-VNAWRGKGLDGEKCTFS 248
            FC  P   G     RS+  +      + +  + +I  +  N        G         
Sbjct: 188 YFCQTPRIFGKNVRHRSIENICKYVEIMAERNLKDIRFITPNAFGYGSKDGKTLNIDKVE 247

Query: 249 DLLYSLSEIKGLVRLRYT--------TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300
            LL ++ EI G     +           H  D +  LI  + D   L+    +  QSGS 
Sbjct: 248 KLLENIREILGNNGRIFFGTFPSEVRPEHVNDETVDLILKYADNKSLV----VGAQSGSQ 303

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY- 359
           RIL   +R HT  +    +    +++  I++S DFI G PGET++D   T+ ++  +   
Sbjct: 304 RILDLCHRGHTVEDIYNAVTT--AIKKGISVSLDFIFGLPGETEEDVEKTIKVMKDLIKM 361

Query: 360 -AQAFSFKYSPRLGTPGSNM-LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQ--IIE 415
            A+  +  + P   TP +      V++ +       + K +            G     +
Sbjct: 362 GAKIHAHTFMPLPQTPFAKANPGVVNKKIIRAMRHEIPKGI----------FYGTWHNQQ 411

Query: 416 VLIEKHGK 423
           +L EK  K
Sbjct: 412 ILAEKISK 419


>gi|116753836|ref|YP_842954.1| radical SAM domain-containing protein [Methanosaeta thermophila PT]
 gi|116665287|gb|ABK14314.1| Radical SAM domain protein [Methanosaeta thermophila PT]
          Length = 371

 Score =  130 bits (328), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 89/376 (23%), Positives = 142/376 (37%), Gaps = 43/376 (11%)

Query: 35  QMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNS 93
           + N Y    +  +     G   V+      +++     I    AE+VY  +   RN    
Sbjct: 12  RKNRY---TIAALLPLVSGARLVDRPRPG-IMLY---SIATPQAEEVYREVDAARN---- 60

Query: 94  RIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTD 153
               G   + +  G    A  EE+LR    V +  G +T    PEL++  R G+      
Sbjct: 61  ---SGMKSVFIAGGPHPSARPEEVLRHFDYVVIGEGEETL---PELIDALRTGRDPGSVK 114

Query: 154 YSVEDKFERLSIV--------DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI-EIS 204
                K   L I         D   +  R + A + I  GC   C +C  P   G     
Sbjct: 115 GIAYMKEGELIITERRGFVDLDRFPSFSRPLLAPIEITRGCPWGCAYCQTPRLCGSVMRH 174

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           RS+  ++  AR  +D     +     N  A+   GL         LL +LSE+    R  
Sbjct: 175 RSIPSILSHARMHMD-----LRFTSPNAFAYGSDGLKPRLERVELLLRTLSELG---RPI 226

Query: 265 YTTSHPRDMSDCLI--KAHGDLDVLM--PYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
           Y  + P ++    I  KA   +        L +  QSGSDRIL+ +NR H  ++     +
Sbjct: 227 YFGTFPSEVRPDFISGKALELITTYCTNRTLSIGGQSGSDRILRDINRGHCVHDIEMACE 286

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA--QAFSFKYSPRLGTPGSNM 378
               +  +I  + D I+  PGET++D   T++L ++I     +    ++ P  GTP  + 
Sbjct: 287 IC--LDHEIVPNVDLILCLPGETEEDQMLTVELAEQIVRMGGRVRVHRFMPLPGTPLESQ 344

Query: 379 LEQVDENVKAERLLCL 394
                      RL  L
Sbjct: 345 EPSPLMREAELRLGRL 360


>gi|206901875|ref|YP_002250468.1| Fe-S oxidoreductase family protein [Dictyoglomus thermophilum
           H-6-12]
 gi|206740978|gb|ACI20036.1| Fe-S oxidoreductase family protein [Dictyoglomus thermophilum
           H-6-12]
          Length = 400

 Score =  130 bits (327), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 61/307 (19%), Positives = 125/307 (40%), Gaps = 23/307 (7%)

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            I  L      +  ++ ++V G  A  + E  ++     ++VV  +      ++++R   
Sbjct: 62  EIEALLRKIKSKIENIKIIVGGPHASGDPESAIKI--GADIVVVGEGEKLFLDIIDRIIS 119

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI-EIS 204
           G+ V    +  +               KR     + I  GC   C FC  P   G     
Sbjct: 120 GEDVKGI-FKAKGFVNLDEFSPFSLKFKR--FGPIEISRGCPYGCYFCQTPRIFGGVMRH 176

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-GLDGEKCTFSDLLYSLSEIKGLVRL 263
           RS+ +++D  + + +  + +I  +  N  A+    G D       +LL  + ++ G    
Sbjct: 177 RSVEKILDLVKVMNNLNLKDIRFVTPNAFAYGSNTGKDVNLVKIEELLSGIRKVIGKKGR 236

Query: 264 RYTTS--------HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
            +  S        H ++ +  L+K + + D L+    +  QSGS RIL   +R HT  + 
Sbjct: 237 IFFGSFPSEVRPEHVKEETLELVKTYANNDNLV----IGAQSGSQRILDLSHRAHTVEDV 292

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY--AQAFSFKYSPRLGT 373
            + ++   +++ ++  + DFI G P E + D   T+  ++++    A+  +  + P  GT
Sbjct: 293 YKAVEL--TLKYNLKANVDFIFGLPYEEEKDIEETVRFIEELVKMGAKVHAHTFMPLPGT 350

Query: 374 PGSNMLE 380
           P +    
Sbjct: 351 PFAKFPP 357


>gi|212223332|ref|YP_002306568.1| hypothetical protein TON_0186 [Thermococcus onnurineus NA1]
 gi|212008289|gb|ACJ15671.1| hypothetical protein, conserved [Thermococcus onnurineus NA1]
          Length = 424

 Score =  130 bits (327), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 82/432 (18%), Positives = 155/432 (35%), Gaps = 84/432 (19%)

Query: 43  RMEDMFFSQGYERVNSMDDADL---------IVLNTCHIREKAAEKVYSFL-GRIRNLKN 92
            +     SQG++    +   D          +VL +    E    +++  L   +R LK 
Sbjct: 18  HLLGALESQGFDLGEMLITKDFNEILKARPKVVLYS-FFTE----EIWGSLPQEVRLLKE 72

Query: 93  SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ--------------TYYRLPE 138
                   +L++  G  A A  +  L +      V+G                 Y    E
Sbjct: 73  ------RGVLLIAGGYHAIAMPKHTLDQLGFDIAVIGEGEEVLYHLLKTLKRTNYKITRE 126

Query: 139 LLE----RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCV 194
           LL             V T +S  + F R             + + + I  GC   C +C 
Sbjct: 127 LLNITGLAFYLNGEFVFTGFSKVEDFWRFPPYPESVR----LISPIEITRGCPFGCYYCQ 182

Query: 195 VPYTRG-IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS 253
            PY +G     R + Q+V  +R++      ++  +  N  A+   G   +      LL +
Sbjct: 183 TPYIKGLRMRHRPIDQIVKYSRRM-----KDMRYITPNAFAYGSPGAILKINKLEALLKA 237

Query: 254 LSEIKGLVRLRYTTSHPRDM--------SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
           L  ++   R  +  + P ++        +  L+  + D   L     +  QSG D +L++
Sbjct: 238 LQPLRKEGRRLFYGTFPSEVRPEFVLPETLELLIDYADNRRLA----IGAQSGDDAMLRA 293

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI--GYAQAF 363
           M+R H     ++ ++ +           DFIVG P ET +  R +++L++ I     +  
Sbjct: 294 MHRIHKVEHVQKAVEYMLEY--GFEPVVDFIVGLPNETPESQRKSIELMEWIIKKGGKVR 351

Query: 364 SFKYSPRLGTPGSN-MLEQVDENVKA--ERLL-------------CLQKKLREQQVSFND 407
           +  + P  GTP +      + E +K    R+               L +KL+     F +
Sbjct: 352 AHYFMPLPGTPWARCKPSPLSEEMKKFLGRMAAKGKIEGSWGKQIELSRKLQNLMDEFYE 411

Query: 408 ---ACVGQIIEV 416
              + +G + +V
Sbjct: 412 EPMSYIGTVRKV 423


>gi|254172700|ref|ZP_04879375.1| Fe-S oxidoreductase family protein [Thermococcus sp. AM4]
 gi|214033629|gb|EEB74456.1| Fe-S oxidoreductase family protein [Thermococcus sp. AM4]
          Length = 417

 Score =  130 bits (327), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 78/428 (18%), Positives = 151/428 (35%), Gaps = 65/428 (15%)

Query: 43  RMEDMFFSQGYERVNSMDDADL---------IVLNTCHIREKAAEKVYSFL-GRIRNLKN 92
            +     SQG++    +   D          +VL +    E    +++  L   +R LK 
Sbjct: 11  HLLGALESQGFDLSGLLITKDFNEILKARPKVVLYS-FFTE----EIWGDLPREVRLLKE 65

Query: 93  SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVD- 151
                    L+V  G  A A  +  L        V+G         L      G R+   
Sbjct: 66  ------RGALLVAGGYHAIAMPKHTLNELGFDIAVIGEGEEVIYRLLTTLKGTGYRITPE 119

Query: 152 -----------------TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCV 194
                            T ++  + F R             + + + I  GC   C +C 
Sbjct: 120 LANVTGLAFYLNGEFTFTGFAKVEDFWRFPPYPESLR----LISPIEISRGCPFRCYYCQ 175

Query: 195 VPYTRG-IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS 253
            PY +G     R + Q+V  +R++      ++  +  N  A+   G   +      LL +
Sbjct: 176 TPYIKGFRMRHRPIDQIVKYSRRM-----KDMRYITPNAFAYGSPGAILKLNKLEALLKA 230

Query: 254 LSEIKGLVRLRYTTSHPRDM--------SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
           L  ++   R  +  + P ++        +  L+  + D   L     +  QSG D +LK+
Sbjct: 231 LQHLRKEGRRLFYGTFPSEVRPEFVLPETLELLIDYADNRRLA----IGAQSGDDAMLKA 286

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI--GYAQAF 363
           M+R H     ++ ++ +           DFIVG P E+++  R +++L+  I     +  
Sbjct: 287 MHRLHRVEHVQRAVEYMLEY--GFEPVVDFIVGLPNESEESQRKSIELMKWIMRKGGKVR 344

Query: 364 SFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK 423
           +  + P  GTP +            + L  +  K + +        + + ++ LIE+  +
Sbjct: 345 AHYFMPLPGTPWTRCRPSPLSEEMKKFLGRMAAKGKIEGSWGIQIDLSRRLQKLIEEFYE 404

Query: 424 EKGKLVGR 431
           E     G+
Sbjct: 405 EPMSYHGK 412


>gi|61657478|emb|CAI44390.1| hypothetical protein [Thermotoga sp. KOL6]
          Length = 397

 Score =  130 bits (326), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 67/293 (22%), Positives = 111/293 (37%), Gaps = 22/293 (7%)

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
           K  +I +     V+  G  A A+ E  L R    +V VG        E + R   G+R+ 
Sbjct: 63  KEVKILKKRGYTVIAGGPHATADPEGCL-RLGFDHVFVG-----DGEENIIRFIMGERLR 116

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI-EISRSLSQ 209
             D   +              R   +   + I  GC   C +C  P   G     R +  
Sbjct: 117 IFDGLSKRINLNHYPPFLPSKR---IYMPIEISRGCPFSCAYCQTPNIAGRVVRHRDVDV 173

Query: 210 VVDEARKLIDNGVCEITLLGQN-VNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT- 267
           ++  A   + +G      +  N        G+        +LL+ L  + G+  + + T 
Sbjct: 174 ILHYANLGVKHGRKLARFIASNSFGYGSKNGVTPNVEKIEELLFGLRRV-GIEEIYFGTF 232

Query: 268 ---SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
                P  ++D ++            + +  QSGSDR+LK + R HT  +  + I++I +
Sbjct: 233 PSEVRPESVTDEVLSVIKKYVN-NRSVVIGAQSGSDRVLKIIKRGHTVEQVEEAIEKIAA 291

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKI--GY-AQAFSFKYSPRLGTP 374
                    DFI GFP ET +D   T + + KI   Y A+  +  + P  GT 
Sbjct: 292 --HGFTPHVDFIFGFPFETREDIEETFNFIVKIVNKYGAKIHAHTFMPLPGTE 342


>gi|319790240|ref|YP_004151873.1| Radical SAM domain protein [Thermovibrio ammonificans HB-1]
 gi|317114742|gb|ADU97232.1| Radical SAM domain protein [Thermovibrio ammonificans HB-1]
          Length = 425

 Score =  130 bits (326), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 69/321 (21%), Positives = 123/321 (38%), Gaps = 42/321 (13%)

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           + +L+ +      +L +V  G       ++ L      + V   +     PELL      
Sbjct: 78  VASLRATARATASNLFLVAGGPHPIGMPKKTLSM--GFDAVCYGEGEETFPELLLALLRE 135

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGV--------------TAFLTIQEGCDKFCTF 192
           K ++    SV+  +           R+R V                 + I  GC   C +
Sbjct: 136 KELL----SVKGLWLSTPNGPVFTGRRRPVELGRYLPVSFKYRKFGPIEISRGCPYVCYY 191

Query: 193 CVVPYTRG-IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLL 251
           C  P+  G  +  R L QVV+   ++ + G+ +   +  N  A+     DG+      L 
Sbjct: 192 CQTPFMFGARQRHRPLEQVVEVISRMREFGLKDFRFITPN--AFSYGSEDGKSVNLEALR 249

Query: 252 YSLSEIK-----------GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300
             L+E K           G         H  + +  L+K     D L+    +  QSGSD
Sbjct: 250 EFLAETKRAAGPGGRIFLGSFPSEVRPEHVTEETVSLVKEFASNDNLV----IGAQSGSD 305

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK-IGY 359
           R+LK  +R HT  +  + +    +V+  +  + DFI G PGET++D   T+ ++ + +  
Sbjct: 306 RVLKLCHRGHTVEDVVRAVKI--TVKAGLKANVDFIFGLPGETEEDVLETVKVMRELVKL 363

Query: 360 -AQAFSFKYSPRLGTPGSNML 379
            A+  +  + P   TP +   
Sbjct: 364 GARVHAHTFMPLPQTPFAGKP 384


>gi|20094234|ref|NP_614081.1| Fe-S oxidoreductase [Methanopyrus kandleri AV19]
 gi|19887265|gb|AAM02011.1| Predicted Fe-S oxidoreductase [Methanopyrus kandleri AV19]
          Length = 435

 Score =  129 bits (325), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 63/244 (25%), Positives = 113/244 (46%), Gaps = 14/244 (5%)

Query: 148 RVVDTDYSVEDKFERLSIV----DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            +VDT +      +  S +    D G    RG   ++    GC   CTFC VP   G  +
Sbjct: 132 EIVDTGWPPPADLDGPSPLKVPRDLGRQDVRGANVYIETHRGCPGACTFCQVPEFFGRRV 191

Query: 204 S-RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
             + +  V++E R+L   G     + G  V    G   +     F +LL  L+++ G   
Sbjct: 192 RWKPVEAVLEEVRELTRGGARRFAISGGTVTT-YGDDEE----DFVELLKRLADLLGREN 246

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +         +++ L++A  D  +   ++ L ++SGSDRIL++M +  T  +  + ++  
Sbjct: 247 VSAPDVRADLLNERLLEAIRDYTI--GWIFLGIESGSDRILRAMRKGITVDDVCEAVELA 304

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           R+V   + ++  FIVG+PGET+DD  AT +L+ ++     F     P  GT    ++ ++
Sbjct: 305 RTV--GVRVAGSFIVGYPGETEDDLEATEELLTELNLDDVFINLAEPIPGTELGRLVTEL 362

Query: 383 DENV 386
            E  
Sbjct: 363 PEEE 366


>gi|14591464|ref|NP_143544.1| hypothetical protein PH1701 [Pyrococcus horikoshii OT3]
 gi|3258131|dbj|BAA30814.1| 428aa long hypothetical protein [Pyrococcus horikoshii OT3]
          Length = 428

 Score =  129 bits (325), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 80/418 (19%), Positives = 160/418 (38%), Gaps = 45/418 (10%)

Query: 43  RMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL-GRIRNLKNS--RIKEGG 99
            +     SQGY+  N +   DL  +    ++ K    +YSF    +  +K     +KE  
Sbjct: 22  HLLAALESQGYDLSNILVTKDLNEI----VKAKPKVVLYSFYSQEVDEVKKEVEILKEKI 77

Query: 100 DLLVVVAGCVAQAEGEEILRRSPIVNVVVG--------------PQTYYRLPELLE---- 141
           + ++V  G  A A  +  L        V+G                 Y    EL +    
Sbjct: 78  NPILVAGGYHAIAMPKHTLNVLGFDIAVIGEGEETLYRLLTSLKKSNYKITKELTDIKGL 137

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG- 200
               G+R   T ++  + F +      G      + + + I  GC   C +C  PY +G 
Sbjct: 138 AFYLGERFFFTGFAKVEDFWKFPPYPEGLK----LISPMEISRGCPFGCYYCQTPYAKGF 193

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
               R + Q+V  +R++      ++  +  N  A+   G   +      LL +L  ++  
Sbjct: 194 RMRHRPIDQIVKYSRRM-----KDMRYITPNAFAYGSPGGILKVEKVEALLRALQPLRKE 248

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLH-----LPVQSGSDRILKSMNRRHTAYEY 315
            R  +  + P ++    +     L++L+ Y       +  QSG + +LK+M+R H     
Sbjct: 249 GRRLFYGTFPSEVRPDFVTRE-TLELLVKYTDTKRIAIGAQSGDNAMLKAMHRLHKVEHV 307

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI--GYAQAFSFKYSPRLGT 373
              ++   S+   +    DFIVG P E+ +  + +++L+  I     +  +  + P  GT
Sbjct: 308 INAVEL--SLEYGLEPVVDFIVGLPNESPESQKKSIELMKWIMRKGGKVRAHYFMPLPGT 365

Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR 431
           P +        N   + L  +  + + +        + + ++ L+E+  +E     G+
Sbjct: 366 PWARCKPSPLSNEMKKFLGRMAAEGKIEGSWGVQINISRRLQKLMEEFYEEPMSYHGK 423


>gi|329911496|ref|ZP_08275547.1| tRNA-i(6)A37 methylthiotransferase [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327545868|gb|EGF30979.1| tRNA-i(6)A37 methylthiotransferase [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 113

 Score =  129 bits (325), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 55/116 (47%), Positives = 78/116 (67%), Gaps = 5/116 (4%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++ F+K++GCQMN YDS +M D+  +  G  + ++ +DAD+I+LNTC +REKA EKV+
Sbjct: 1   MQKKVFIKTFGCQMNEYDSDKMADVLNATHGMFKTDTPEDADVILLNTCSVREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLP 137
           S LGRIR LK        DL++ V GCVA  EG  I++R+P V+VV GPQ     P
Sbjct: 61  SDLGRIRELKL----LKPDLVIGVGGCVASQEGAAIIKRAPYVDVVFGPQRCTACP 112


>gi|219851947|ref|YP_002466379.1| Radical SAM domain protein [Methanosphaerula palustris E1-9c]
 gi|219546206|gb|ACL16656.1| Radical SAM domain protein [Methanosphaerula palustris E1-9c]
          Length = 360

 Score =  129 bits (324), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 73/297 (24%), Positives = 114/297 (38%), Gaps = 26/297 (8%)

Query: 100 DLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDK 159
             + +  G  A A  +E    +  V V  G  T   L   +E    G+       S E  
Sbjct: 60  PCITIAGGPYATACYQEAATWADYVVVGEGEHTLPSLLAAIEEGD-GRIPSGVATSDEYT 118

Query: 160 FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI-EISRSLSQVVDEARKLI 218
             R S+V   +     V  ++ I  GC   C +C  P   G     RS+  VV  A +  
Sbjct: 119 PARSSVVLDAFPPFSQVKGYIEISRGCPHRCGYCQTPQIFGHCMRHRSIEAVVRAAERC- 177

Query: 219 DNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLI 278
                ++  +  N  A+   G DG       + + L  + G V   Y  + P ++    I
Sbjct: 178 ----RDVRCVTPNALAY---GSDGIHPRLDKVEHLLRRLSGAV---YIGTFPSEVRPEFI 227

Query: 279 KAHGDLDVLMPY-----LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
                LD++  Y     LH   QSGSDR+L ++ R HT     + +D  R     I    
Sbjct: 228 TPEA-LDLICTYCSNTRLHFGAQSGSDRVLTALGRGHTVSAVEEAVDLCREA--GITPVV 284

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQ--AFSFKYSPRLGTPGSNMLEQ--VDENV 386
           D IVG P + D+  RAT  L+  +   +    + ++ P   T  +N   +  + E V
Sbjct: 285 DMIVGLPCDDDESERATGKLIRWVA-DRGIVHAHQFMPLPATRLANSAPRPLLPETV 340


>gi|150020941|ref|YP_001306295.1| radical SAM domain-containing protein [Thermosipho melanesiensis
           BI429]
 gi|149793462|gb|ABR30910.1| Radical SAM domain protein [Thermosipho melanesiensis BI429]
          Length = 398

 Score =  128 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 64/324 (19%), Positives = 120/324 (37%), Gaps = 34/324 (10%)

Query: 64  LIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPI 123
           +++ +           + +    ++ LK          L +  G  A A   ++L+    
Sbjct: 53  VVLYSFMSF------DLANVTEELKVLKEK------GYLTIAGGPHATANPNQLLKL--G 98

Query: 124 VNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQ 183
            + V        + + L+      R+ D      D  +           ++ +   + I 
Sbjct: 99  FDYVFTGDGERNIRDFLDGKIPESRIFDGVTKRVDLSKFPPFCP-----EKNLFMPIEIT 153

Query: 184 EGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG 242
            GC   C +C  P   G     R + Q+V+  +  +  G      +  N  ++     +G
Sbjct: 154 RGCPFSCGYCQTPRLAGKLIRHRPVEQIVEYTKIGVQKGRKIARFISPN--SFGYGSKNG 211

Query: 243 EKCTFSDLLYSLSEIKGL-VRLRYTTSHPRDM-----SDCLIKAHGDLDVLMPYLHLPVQ 296
                  +   L  +KG+ V   Y  + P D+     +  +++          Y+ +  Q
Sbjct: 212 VIPNVEVVENLLYSLKGVGVEEIYFGTFPSDVRPESVNREILRVIKKYVN-NRYIVIGAQ 270

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
           SGS+R+LK +NR H   E  + +  +           DFI GFP ETD+D   T + + K
Sbjct: 271 SGSERVLKKINRGHNLEEIERALSLLVEF--GFIPRVDFIFGFPFETDEDIENTFEFIKK 328

Query: 357 I--GY-AQAFSFKYSPRLGTPGSN 377
           I   Y A+  +  + P  GTP +N
Sbjct: 329 IVNKYKAKVHAHTFMPLPGTPLAN 352


>gi|147921089|ref|YP_685100.1| redox-active protein [uncultured methanogenic archaeon RC-I]
 gi|110620496|emb|CAJ35774.1| predicted redox-active protein (CxxC motif) [uncultured
           methanogenic archaeon RC-I]
          Length = 366

 Score =  128 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 77/306 (25%), Positives = 111/306 (36%), Gaps = 32/306 (10%)

Query: 102 LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV---------DT 152
           + +  G       EE L     V V  G  T    PELL   R G  V          D 
Sbjct: 60  VFIAGGPHPSGCPEEALEHFDYVVVGEGEATL---PELLSTIRAGGDVSKVRGIAYLQDG 116

Query: 153 DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG-IEISRSLSQVV 211
            Y    K E + + D     K  +   + I  GC   C +C  P   G     RS+  + 
Sbjct: 117 HYCYTGKREDVDL-DAYPPFKPPLYGPIEISRGCPWNCAYCQTPRLFGHRMRHRSVESIC 175

Query: 212 DEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPR 271
              +   D       L+  N  A+   G+         LL +LS    +    + +    
Sbjct: 176 KYDKYYEDK-----RLVSPNAFAYGSDGITPNPAAVEKLLKNLS--GNIYFGTFPSEVRP 228

Query: 272 DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAI 331
           +     + +          LHL  QSGSDR+LK+++R HTA +       I+     +  
Sbjct: 229 EFVTPDMVSLVTTYCANKELHLGGQSGSDRVLKAIHRGHTAEQVVTAARTIKDA--GLTP 286

Query: 332 SSDFIVGFPGETDDDFRATMDLVDKI----GYAQAFSFKYSPRLGTP-GSNMLEQVDENV 386
             DFI G PGE  +D  AT++ +  I    G  +A  F   P  GT         VD  +
Sbjct: 287 VVDFIFGLPGENKEDQTATLENIRAIIREGGKIRAHYFL--PLPGTELAGTTPASVDPEI 344

Query: 387 KAERLL 392
             +RLL
Sbjct: 345 --DRLL 348


>gi|20094225|ref|NP_614072.1| Fe-S oxidoreductase family protein [Methanopyrus kandleri AV19]
 gi|19887253|gb|AAM02002.1| Fe-S oxidoreductase family protein [Methanopyrus kandleri AV19]
          Length = 402

 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 76/383 (19%), Positives = 142/383 (37%), Gaps = 44/383 (11%)

Query: 57  NSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEE 116
              +  D++V +          +V   L               D++ +  G    A  ++
Sbjct: 40  PDPEPGDIVVFSFNTFMAPEVFEVVERL-------------HDDVVKLAGGPHPSARPDQ 86

Query: 117 ILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVD-------GG 169
            L      ++V+  +    +PE+L     GK   +       +                 
Sbjct: 87  CLEH--GFDIVLIGEGEEVVPEVLRELIRGKEPEERPGVYLGEGNPQPAPRVEDLDRFPP 144

Query: 170 YNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG-IEISRSLSQVVDEARKLIDN-GVCEITL 227
           Y+    +   + I  GC   C FC V    G     RS+  VV   R+ ++  G      
Sbjct: 145 YSEGFRIFCSVEITRGCPWGCAFCQVTRLFGPKLRHRSVEDVVRWVRRGVERYGHTFARF 204

Query: 228 LGQNVNAWRG-KGLDGEKCTFSDLLYSLSEIKGLVRLRYT--------TSHPRDMSDCLI 278
           +  +  A+    G+  +      LL SL  I+GL ++ +          S  +  +  LI
Sbjct: 205 VAPDALAYGSPDGIRLKPDRVKRLLRSLRSIEGLEKVFFGSFPAELRPDSIAKGDAIELI 264

Query: 279 KAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVG 338
             + D + +    ++  QSGS+R+LK + R HT  +    +++   V   +    DFI G
Sbjct: 265 AHYADNERV----NIGAQSGSERVLKRIERGHTVEDVEVAVEKALEV--GLKPVVDFIFG 318

Query: 339 FPGETDDDFRATMDLVDKI--GYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER-LLCLQ 395
            PGET++D  A+++L   I     +     + P  GTP  N  E    + K  R L    
Sbjct: 319 LPGETEEDQLASVELARWIIKRGGEVRLHYFMPLPGTPLEN-EEPAPLSSKIRRILGRWT 377

Query: 396 KKLREQQVSFNDACVGQI-IEVL 417
           ++ + +    +   + +  ++VL
Sbjct: 378 QEGKAEGAWGHQMRLSKTAMKVL 400


>gi|150401229|ref|YP_001324995.1| radical SAM domain-containing protein [Methanococcus aeolicus
           Nankai-3]
 gi|150013932|gb|ABR56383.1| Radical SAM domain protein [Methanococcus aeolicus Nankai-3]
          Length = 455

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 74/314 (23%), Positives = 128/314 (40%), Gaps = 22/314 (7%)

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           ++N+ N   ++  +  + V G V  A  E IL   P+  V++G +     P ++E ++ G
Sbjct: 76  LKNIVNFIKRKSKNTKIFVGGPV-SAYPEIILGELPVDGVIIG-EGELITPNIIEGSKEG 133

Query: 147 KRVVDTDY-----------SVEDKFERLSIVDGGYNRK-RGVTAFLTIQEGCDKFCTFCV 194
               D +             +E     L I +   N+  RG   ++    GC   CTFC 
Sbjct: 134 LAYRDINNNEIIINTPKLKKLETLHADLLIPNNIANQSIRGANVYIETHRGCIGNCTFCQ 193

Query: 195 VPYTRGIE-ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS 253
           VP   G E  S+ L +V++E ++    GV  I + G    +      +  K  F +LL  
Sbjct: 194 VPKFFGKEIRSKPLDEVLNEVKQFKKRGVKRIAISGG-TGSLYNFKKEVNKSMFIELLEE 252

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
           +S I G   L         + +  + A     +   ++   ++SGSD ILKSM +  +  
Sbjct: 253 VSNIIGAKNLSVPDMRVDYVDEDTLNAIKKYTI--GWVFFGLESGSDNILKSMKKGVSVK 310

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
           +    I+  +     + +   FIVG P E + D   T D +        F     P   T
Sbjct: 311 KNLNSIELAKQC--SVKVGGSFIVGAPNEKEIDHLLTKDFIVDAELDDIFVSMAEPIPKT 368

Query: 374 PGSNMLEQVDENVK 387
              N++  +D ++K
Sbjct: 369 ELCNLV--LDTDIK 380


>gi|261884111|ref|ZP_06008150.1| hypothetical protein CfetvA_02356 [Campylobacter fetus subsp.
           venerealis str. Azul-94]
          Length = 209

 Score =  127 bits (320), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 41/175 (23%), Positives = 80/175 (45%), Gaps = 2/175 (1%)

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
           G       L+  + +I+ +   R    +P   S  LI         + Y  +P+Q  +D 
Sbjct: 18  GINDGLILLIDEVEKIEAVKSARILYLYPTTASMELIDKIIASPKFVNYFDMPIQHINDD 77

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
           +LK M R  +    ++++ ++R+  P   + +  I+G PGET + F    D + +  + +
Sbjct: 78  MLKIMRRGSSKERLKELLTKMRAA-PKSFLRTGIIIGHPGETGERFDELCDFLTEFKFDR 136

Query: 362 AFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEV 416
             +F YS   GT    M EQ+      +RL  ++K +++Q      + V ++I+V
Sbjct: 137 ISAFAYSKEEGTLAYEM-EQIPSKTITKRLNTIEKIIKKQIEGSFKSLVREVIKV 190


>gi|320100458|ref|YP_004176050.1| Radical SAM domain-containing protein [Desulfurococcus mucosus DSM
           2162]
 gi|319752810|gb|ADV64568.1| Radical SAM domain protein [Desulfurococcus mucosus DSM 2162]
          Length = 435

 Score =  127 bits (320), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 63/257 (24%), Positives = 106/257 (41%), Gaps = 14/257 (5%)

Query: 169 GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI-EISRSLSQVVDEARKLIDNGVCEITL 227
            +   RG+   + +  GC   C++C V Y  G     RS+ ++V   R+L   GV +   
Sbjct: 165 PFPYWRGLINPVEVTRGCPYGCSYCQVSYMHGAFYRHRSIGRIVYYVRELARLGVRDYRF 224

Query: 228 LGQNVNAWRGKGLDGEKC--TFSDLLYSLSEIKGLVRLR-YTTSHPRDMSDCLI--KAHG 282
           +  +  ++    +  E       +LL SL E+   V  R +  S P ++    +  +A  
Sbjct: 225 ITPDSLSYGLSTVRREPDVGLIDELLSSLHEVARDVGGRIFYGSFPSEVRPEHVTGEAVR 284

Query: 283 DLDVLM--PYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFP 340
            L   +    + +  QSGSDR+L  + R H+  +    +  I         S D I+G P
Sbjct: 285 VLRRYVSNREIIVGAQSGSDRVLSMVRRGHSVDDVLNAVRVISEN--GFTPSVDVILGIP 342

Query: 341 GETDDDFRATMDLVDKI--GYAQAFSFKYSPRLGTP-GSNMLEQVDENVKAERLLCLQKK 397
           GET +D   T+ L+++I     +     Y P  GTP G      V  +V   R+  L   
Sbjct: 343 GETREDQEETLRLIERILGMGGRIHVHYYLPLPGTPLGLKTPAPVPADV-EARISRLIGS 401

Query: 398 LREQQVSFNDACVGQII 414
            +     FN   + + I
Sbjct: 402 GKAYGSWFNQKELSRRI 418


>gi|150399412|ref|YP_001323179.1| radical SAM domain-containing protein [Methanococcus vannielii SB]
 gi|150012115|gb|ABR54567.1| Radical SAM domain protein [Methanococcus vannielii SB]
          Length = 438

 Score =  127 bits (319), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 73/359 (20%), Positives = 134/359 (37%), Gaps = 29/359 (8%)

Query: 29  VKSYGCQMNVYDSLRMEDMF-FSQGYER--VNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + SYG       ++ +  +      Y+   V ++ + +L  LN+  +       +     
Sbjct: 10  IYSYG-------AMLISGILKEKHNYDVKLVRNLSENNLF-LNSDVVIFSLYSTLNILDE 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            I+N      K G   + V       A  E IL    +  V++G       PE++   + 
Sbjct: 62  NIKNTIELIKKSGKTRVYVAGP--VSAYPEIILNELNLDGVILGEGELT-TPEIILGGKN 118

Query: 146 GKRVVDTDYSVEDKFERLS---------IVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
           G      D  +++  E+             D      RG   ++    GC   CTFC VP
Sbjct: 119 GLAYFKNDEIIKNNVEKKPELDFSKIYIPKDIEKQTVRGANIYMETHRGCLGHCTFCQVP 178

Query: 197 YTRGI-EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
              G    S+ L  +++E + L   GV  I + G    +         +  F +++ S+S
Sbjct: 179 EFFGRDIRSKPLELILNEVKALKRRGVNRIAISGG-TGSLYNFKNSLNRDNFIEMVKSVS 237

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
           EI G   L         + + ++ A  D  +   ++   ++SGS+ +LK M +     + 
Sbjct: 238 EIIGKENLSIPDMRVDYIDEEILCAIRDYSI--GWVFYGIESGSNELLKKMKKGTNTAKN 295

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
            + I   +     + ++  FIVG P E++ D+  T D +        F     P  GT 
Sbjct: 296 LRAIKTAKEC--GVKVAGSFIVGHPDESEYDYLLTKDFIVDAELDDIFISAAEPIPGTE 352


>gi|61657454|emb|CAI44366.1| hypothetical protein [Thermotoga sp. SG1]
          Length = 404

 Score =  126 bits (318), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 65/328 (19%), Positives = 117/328 (35%), Gaps = 30/328 (9%)

Query: 54  ERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAE 113
           E  N   D  ++  +      +  ++    + +++    + I  G        GC+    
Sbjct: 38  EIKNFPPDETVVAYSFMSFDLEVVKEE---VSQLKEQGYTLIAGGPHTSADPEGCL---- 90

Query: 114 GEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRK 173
                 R    +V +G        E + R   G+R  +  +    K   L+        K
Sbjct: 91  ------RMGFDHVFIG-----DGEENILRFLMGER--ERIFDGISKRVNLNHYPPFLPSK 137

Query: 174 RGVTAFLTIQEGCDKFCTFCVVPYTRG-IEISRSLSQVVDEARKLIDNGVCEITLLGQN- 231
            G+   + I  GC   C +C  P   G     R +  ++  AR  ++        +  N 
Sbjct: 138 -GIYMPIEITRGCPFSCAYCQTPSLAGKRVRHRDVDVILHYARLGVERNRKLARFIAPNS 196

Query: 232 VNAWRGKGLDGEKCTFSDLLYSLSE--IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMP 289
                  G+        +LLY L +  ++ +    + +    +     +       V   
Sbjct: 197 FGYGSRNGVTPNVEKIEELLYGLKKVGVEEIYFGTFPSEVRPESVTDEVLKVVKKYVKNR 256

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
            + +  QSGSDRILK + R HT  +  + I++I           DFI GFP ET +D   
Sbjct: 257 SIVIGSQSGSDRILKIIKRGHTVEQVEEAIEKI--AFHGFTPHVDFIFGFPFETKEDIEM 314

Query: 350 TMDLVDKI--GY-AQAFSFKYSPRLGTP 374
           T + + +I   Y A+  +  + P  GT 
Sbjct: 315 TFNFITRIVERYGAKIHAHTFMPLPGTE 342


>gi|296242832|ref|YP_003650319.1| radical SAM domain-containing protein [Thermosphaera aggregans DSM
           11486]
 gi|296095416|gb|ADG91367.1| Radical SAM domain protein [Thermosphaera aggregans DSM 11486]
          Length = 443

 Score =  126 bits (318), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 62/238 (26%), Positives = 98/238 (41%), Gaps = 19/238 (7%)

Query: 169 GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI-EISRSLSQVVDEARKLIDNGVCEITL 227
            +   RG+   + I  GC   C +C V Y +G     RS+ ++V  A   +  G  ++  
Sbjct: 164 PFPYWRGIVNPIEITRGCSFGCFYCQVSYLQGFTLRHRSIDRIVTYAEIALKLGFKDLRF 223

Query: 228 LGQNVNAWRGKGLDGEKCTFSD---LLYSLSE--IKGLVRLRYTT----SHPRDMSDCLI 278
           +  +  +  G               L+  L    +K   R+ Y T      P      ++
Sbjct: 224 ISPDSLS-YGLPFSTSPVNLEKIESLMEGLHAKTVKYGGRIFYGTFPSEVRPEHAQQDVL 282

Query: 279 KAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVG 338
           +      V    L +  QSGS+RILK + R H   E  Q ++   ++R     S DFI+G
Sbjct: 283 RTIRKY-VANRELIIGGQSGSERILKLIRRGHGVEEIEQAVES--ALREGFTPSVDFIIG 339

Query: 339 FPGETDDDFRATMDLVDKI--GYAQAFSFKYSPRLGTP-GSNMLEQVDENVKAE--RL 391
           FP ET++D   T+ L +K+    A+     Y P  GTP G      +   V+ E  RL
Sbjct: 340 FPSETEEDMLQTLKLAEKLVGKGARIHLHYYIPLPGTPLGLRKPAPLPVKVRKEWSRL 397


>gi|126465434|ref|YP_001040543.1| radical SAM domain-containing protein [Staphylothermus marinus F1]
 gi|126014257|gb|ABN69635.1| Radical SAM domain protein [Staphylothermus marinus F1]
          Length = 450

 Score =  126 bits (317), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 58/264 (21%), Positives = 106/264 (40%), Gaps = 21/264 (7%)

Query: 149 VVDTDYSVEDKFERLSIVD-GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE-ISRS 206
           +VD       K E + + D   +   R +   + I  GC   C +C V Y  G     RS
Sbjct: 143 IVDDKPIYTGKQEPIKLDDYPPFPYWRLLFNPIEISRGCPYGCKYCQVSYMHGFYMRHRS 202

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE-----IKGLV 261
           +  +V+    +I   V +I  +  +  A  G      K     +   L       ++   
Sbjct: 203 IDNIVEYTGYMIRKNVRDIRFISPDSLA-YGLKTISRKPRLDLIEELLFRLYKKYVEKKN 261

Query: 262 RLRYTTSHPRDMSDCLI--KAHGDLDVLM--PYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
              +  S P ++    +   A   L   +    + L  Q+GS+R+L+ + R+H+  +   
Sbjct: 262 ARIFYGSFPSEVRPEHLTRDAARILRKYVANKNIILGAQTGSNRLLRLIGRKHSIEDVYS 321

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY--AQAFSFKYSPRLGTPG 375
            ++   +V+     + D+I+G PGET +D   T+  + K+    A+     + P  G+P 
Sbjct: 322 AVEN--AVKYGFIPNVDYIIGLPGETREDLYETLRSIKKLVSIGARIHLHVFLPLPGSPY 379

Query: 376 SNMLE-QVDENVKAERLLCLQKKL 398
           + M   +V   VK E    L K +
Sbjct: 380 AWMPPGKVPSWVKKE----LMKLI 399


>gi|37498997|gb|AAQ91588.1| hypothetical protein [Helicobacter mustelae]
          Length = 175

 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 44/180 (24%), Positives = 82/180 (45%), Gaps = 19/180 (10%)

Query: 58  SMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEI 117
               AD+I++NTC   + A E+    + ++   +          L+V  GC+ Q   +E+
Sbjct: 1   DPSSADVIIINTCGFIQSAKEESIGMILKMAQERKE------GALIVANGCLTQRYQKEL 54

Query: 118 LRRSPIVNVVVGPQTYYRLPELLERAR--FGKRVVDTDYSVEDKFERLSIVDGGYNRKRG 175
             + P + ++ G   Y R+ E++E+ R     RV   D   E                  
Sbjct: 55  REQIPEIGIITGVGDYDRIDEMIEQRRGISSDRVFLADEKKERII-----------TGSR 103

Query: 176 VTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW 235
           + A++ I EGC++ C+FC +P  +G   SRS+  V+ E + L   G  + T + Q+ +++
Sbjct: 104 IHAYIKISEGCNQACSFCSIPSFKGKLKSRSIESVLKEIQNLSQRGYQDFTFIAQDSSSY 163


>gi|330507344|ref|YP_004383772.1| radical SAM domain-containing protein [Methanosaeta concilii GP-6]
 gi|328928152|gb|AEB67954.1| radical SAM domain protein [Methanosaeta concilii GP-6]
          Length = 377

 Score =  125 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 68/301 (22%), Positives = 109/301 (36%), Gaps = 21/301 (6%)

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           G +    ++  K   D + V  G    A  EE+L     V V  G +T   L   +    
Sbjct: 45  GEVYQEVDTARKAKLDAVFVAGGPHPSALPEEVLEHFDFVVVGEGEETLPELIRAITDGL 104

Query: 145 FGKRVVDTDYS----VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
               V    Y     +    +R  +    Y     + A + I  GC   CT+C  P   G
Sbjct: 105 DPGMVKGIAYKSQGLICFTEKRAPVNLDLYPPFTRILAPIEISRGCPWGCTYCQTPRLFG 164

Query: 201 I-EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
                R++  V   AR+       +I     N  A+   G DG +     +   L E+  
Sbjct: 165 RCMRHRTIPVVARFARRH-----KDIRFTSPNSLAY---GSDGRRPRLEKVKALLEELSE 216

Query: 260 LVRLRYTTSHPRDMSDCLI--KAHGDLDVLM--PYLHLPVQSGSDRILKSMNRRHTAYEY 315
             +  Y  + P ++    +  +A   +        + L  QSGS  +LKS+ R H   E 
Sbjct: 217 QKKPIYFGTFPSEVRPDFVSDEALEIITKYCANKTISLGGQSGSPAVLKSIGRGHGRQEI 276

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI--GYAQAFSFKYSPRLGT 373
               + I  +   +    D I G P E+ +D   T+DL   I     +  + ++ P  GT
Sbjct: 277 ESACEHI--LDHGLIPLVDLIFGLPMESAEDQHMTLDLARWIEEKGGKVRAHRFMPLPGT 334

Query: 374 P 374
           P
Sbjct: 335 P 335


>gi|61657427|emb|CAI44342.1| hypothetical protein [Thermotoga sp. RQ7]
          Length = 404

 Score =  125 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 64/328 (19%), Positives = 116/328 (35%), Gaps = 30/328 (9%)

Query: 54  ERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAE 113
           E  N   D  ++  +      +  ++    L +                ++  G  A A+
Sbjct: 38  EIKNFPPDETVVAYSFMSFDLEVVKEEVVQLKK------------QGYTLIAGGPHASAD 85

Query: 114 GEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRK 173
            E  L      +V +G        E + R   G+R  +  +    K   L+        K
Sbjct: 86  PEGCLG-MGFDHVFIG-----DGEENILRFLMGER--ERIFDGISKRVNLNHYPPFLPSK 137

Query: 174 RGVTAFLTIQEGCDKFCTFCVVPYTRGI-EISRSLSQVVDEARKLIDNGVCEITLLGQN- 231
            G+   + I  GC   C +C  P   G     R +  ++  A+  ++        +  N 
Sbjct: 138 -GIYMPIEITRGCPFSCAYCQTPSLAGKQVRHRDVDVIIHYAKLGVEKNRKLARFIAPNS 196

Query: 232 VNAWRGKGLDGEKCTFSDLLYSLSE--IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMP 289
                  G+        +LLY L +  ++ +    + +    +     +       V   
Sbjct: 197 FGYGSRNGVTPNVEKIEELLYGLKKVGVEEIYFGTFPSEVRPESVTDEVLKVVKKYVKNR 256

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
            + +  QSGSDR+LK + R HT  +  + I++I           DFI GFP ET +D   
Sbjct: 257 SIVIGAQSGSDRVLKIIKRGHTVEQVEEAIEKI--AFHGFTPHVDFIFGFPFETKEDIEM 314

Query: 350 TMDLVDKI--GY-AQAFSFKYSPRLGTP 374
           T + + +I   Y A+  +  + P  GT 
Sbjct: 315 TFNFIMRIVERYGAKIHAHTFMPLPGTE 342


>gi|282162760|ref|YP_003355145.1| hypothetical protein MCP_0090 [Methanocella paludicola SANAE]
 gi|282155074|dbj|BAI60162.1| conserved hypothetical protein [Methanocella paludicola SANAE]
          Length = 370

 Score =  125 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 67/314 (21%), Positives = 112/314 (35%), Gaps = 22/314 (7%)

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           + R++         D + +  G        E L     V V  G +T   L   L     
Sbjct: 44  QARSVFREVGSASTDSVFIAGGPHPSGCPGETLEHFDYVVVGEGEETLPDLVSTLNHGGD 103

Query: 146 GKRVVDTDYSVEDKFERLSI-----VDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
              V    Y  + K           +DG    K  +   + I  GC   C +C  P   G
Sbjct: 104 VSGVKGIAYKKDGKVIFTPKRGEADLDGHPPFKPPLFGPIEITRGCPWSCAYCQTPRLFG 163

Query: 201 IE-ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
                RS+  +    +   D       L+  N  A+   G+  ++    +LL SLS    
Sbjct: 164 HHMRHRSVEAICKYDKFYEDK-----RLVSPNAFAYGSDGITPDEAAVENLLKSLS--GN 216

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           +    + +    +     +    +       +HL  QSGSDR+LK+++R HTA +    +
Sbjct: 217 IYFGTFPSEVRPEFVTPRMLELVNAYCANREIHLGGQSGSDRMLKAIHRGHTAAQVLDAV 276

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL----VDKIGYAQAFSFKYSPRLGTP- 374
           +        +    DFI G PGE ++D + T+D     + + G  +A  F   P  GT  
Sbjct: 277 ELTHDN--GLTPVVDFIFGLPGEREEDQQLTVDCINAIIKEGGKVRAHYF--MPLPGTEL 332

Query: 375 GSNMLEQVDENVKA 388
                E++   +  
Sbjct: 333 ADTKPEKISPTIDK 346


>gi|222099479|ref|YP_002534047.1| hypothetical protein CTN_0505 [Thermotoga neapolitana DSM 4359]
 gi|221571869|gb|ACM22681.1| Putative uncharacterized protein [Thermotoga neapolitana DSM 4359]
          Length = 376

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 64/328 (19%), Positives = 116/328 (35%), Gaps = 30/328 (9%)

Query: 54  ERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAE 113
           E  N   D  ++  +      +  ++    L +                ++  G  A A+
Sbjct: 10  EIKNFPPDETVVAYSFMSFDLEVVKEEVVQLKK------------QGYTLIAGGPHASAD 57

Query: 114 GEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRK 173
            E  L      +V +G        E + R   G+R  +  +    K   L+        K
Sbjct: 58  PEGCLG-MGFDHVFIG-----DGEENILRFLMGER--ERIFDGISKRVNLNHYPPFLPSK 109

Query: 174 RGVTAFLTIQEGCDKFCTFCVVPYTRGI-EISRSLSQVVDEARKLIDNGVCEITLLGQN- 231
            G+   + I  GC   C +C  P   G     R +  ++  A+  ++        +  N 
Sbjct: 110 -GIYMPIEITRGCPFSCAYCQTPSLAGKQVRHRDVDVIIHYAKLGVEKNRKLARFIAPNS 168

Query: 232 VNAWRGKGLDGEKCTFSDLLYSLSE--IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMP 289
                  G+        +LLY L +  ++ +    + +    +     +       V   
Sbjct: 169 FGYGSRNGVTPNVEKIEELLYGLKKVGVEEIYFGTFPSEVRPESVTDEVLKVVKKYVKNR 228

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
            + +  QSGSDR+LK + R HT  +  + I++I           DFI GFP ET +D   
Sbjct: 229 SIVIGAQSGSDRVLKIIKRGHTVEQVEEAIEKI--AFHGFTPHVDFIFGFPFETKEDIEM 286

Query: 350 TMDLVDKI--GY-AQAFSFKYSPRLGTP 374
           T + + +I   Y A+  +  + P  GT 
Sbjct: 287 TFNFIMRIVERYGAKIHAHTFMPLPGTE 314


>gi|297526282|ref|YP_003668306.1| Radical SAM domain protein [Staphylothermus hellenicus DSM 12710]
 gi|297255198|gb|ADI31407.1| Radical SAM domain protein [Staphylothermus hellenicus DSM 12710]
          Length = 450

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 53/244 (21%), Positives = 100/244 (40%), Gaps = 20/244 (8%)

Query: 168 GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG-IEISRSLSQVVDEARKLIDNGVCEIT 226
             +   R +   + I  GC   C +C V Y  G     RS+  +V+    +++  + +I 
Sbjct: 163 PPFPYWRPLFNPIEISRGCPYGCKYCQVSYMHGFFMRHRSIDNIVEYTGCMVEKNIRDIR 222

Query: 227 LLGQNVNAWRGKGLDGEKCTFSDLLYSLSE-----IKGLVRLRYTTSHPRDMSDCLI--K 279
            +  +  A  G      +     +   LS      ++      +  S P ++    +   
Sbjct: 223 FISPDSLA-YGLKTMSREPRLDLIEELLSRLYKKYVERKGARIFYGSFPSEVRPEHLTRD 281

Query: 280 AHGDLDVLM--PYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIV 337
           A   L   +    + L  Q+GSDR+LK + R+H+  +    ++   +V+     + D+I+
Sbjct: 282 AARILRKYVANKNIILGAQTGSDRLLKLIGRKHSIEDVYNAVEN--AVKYGFIPNVDYII 339

Query: 338 GFPGETDDDFRATMDLVDKI--GYAQAFSFKYSPRLGTPGSNMLE-QVDENVKAERLLCL 394
           G PGET DD   T+  + K+    A+     + P  G+P + M   +V   V+ E    L
Sbjct: 340 GLPGETRDDLYETIRSIKKLVSMGARIHLHVFLPLPGSPYAWMPPGKVPSWVRKE----L 395

Query: 395 QKKL 398
            K +
Sbjct: 396 MKLI 399


>gi|159905706|ref|YP_001549368.1| radical SAM domain-containing protein [Methanococcus maripaludis
           C6]
 gi|159887199|gb|ABX02136.1| Radical SAM domain protein [Methanococcus maripaludis C6]
          Length = 441

 Score =  124 bits (312), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 70/326 (21%), Positives = 128/326 (39%), Gaps = 30/326 (9%)

Query: 61  DADLIVLN---TCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEI 117
            +D+++ +   T +I +   +    FL                + + VAG V  A  E I
Sbjct: 48  KSDIVIFSLYSTLNIIDPVIKDTIDFLK------------SKHMKIYVAGPV-SAYPEII 94

Query: 118 LRRSPIVNVVVG------PQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYN 171
           L    +  V++G      P+      E L     G+ +++   S  D       V     
Sbjct: 95  LNELNVDGVILGEGEITTPEIINGSTEGLAYIENGEMIINKPKSKPDLDFSKIYVPKDIE 154

Query: 172 RK--RGVTAFLTIQEGCDKFCTFCVVPYTRGI-EISRSLSQVVDEARKLIDNGVCEITLL 228
            +  RG   ++    GC   CTFC VP   G    S+ +  +++E ++L  NGV  I + 
Sbjct: 155 TQNIRGANVYIETHRGCLGHCTFCQVPEFFGRDIRSKPIELIIEEVKELKKNGVKRIAIS 214

Query: 229 GQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLM 288
           G    +         K  F +++ S+S + G   L         + + ++ A  +  +  
Sbjct: 215 GG-TGSLYNFKNTVNKNKFVEMIESVSNMIGRQNLSVPDMRVDYVDEEVLNAIKNYSI-- 271

Query: 289 PYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFR 348
            ++   ++SGSDR+L SM +   + +  + I+  ++    + ++  FIVG P E + DF 
Sbjct: 272 GWVFYGIESGSDRLLNSMKKGTNSKKNLRAIELAKNC--GVKVAGSFIVGHPKEKEVDFL 329

Query: 349 ATMDLVDKIGYAQAFSFKYSPRLGTP 374
            T D +        F     P   T 
Sbjct: 330 MTKDFIVDAELDDVFVSAAEPIPRTE 355


>gi|150399807|ref|YP_001323574.1| radical SAM domain-containing protein [Methanococcus vannielii SB]
 gi|150012510|gb|ABR54962.1| Radical SAM domain protein [Methanococcus vannielii SB]
          Length = 372

 Score =  123 bits (310), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 66/368 (17%), Positives = 137/368 (37%), Gaps = 39/368 (10%)

Query: 44  MEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLV 103
           +    F+   + V  +++ ++++ +   ++     K    + R++           D+++
Sbjct: 21  VSGTLFNNFNDLVRHLEEINILIYSFMSMQRNEVLKEIKEIKRLKK----------DIIL 70

Query: 104 VVAGCVAQAEGEEILRR-SPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFER 162
           +  G       ++ +      V V  G  T  +L  L++  +  K  +     VE+  E 
Sbjct: 71  IAGGAHPSGAPKDTVDMGFEYVIVGEGEITLPKLVNLIKTGKSPKDAIIFGEPVENFEEF 130

Query: 163 LSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI-EISRSLSQVVDEARKLIDNG 221
             I            A + I  GC   C FC  P   G     RS+  +V   + + D  
Sbjct: 131 NKIWP---------LAPIEITRGCPYNCRFCQTPQIFGKNVRHRSIDSIVKIVKTMGD-- 179

Query: 222 VCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLI--K 279
              I  +  N  ++  K   G K     L   + ++  +    +  + P ++    +  K
Sbjct: 180 ---IRFVTPNAFSYGSKT--GTKPDIEKLENLMKKLFEIKNRLFFGTFPSEVRPEFVTSK 234

Query: 280 AHGDLDVLM--PYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIV 337
               ++      ++H   QSGS+ +L  + R H+  +    ++  R     +    DFI 
Sbjct: 235 TLELVNKYCDNTFIHFGAQSGSNEVLNYIRRGHSVLDIINAVENCREYA--LTPKVDFIF 292

Query: 338 GFPGETDDDFRATMDLVDKI--GYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQ 395
           GFP E +   + ++DL+  I     +  +  + P  GT          E ++ E L  L 
Sbjct: 293 GFPDENEFQRKESIDLMKYIIKKNGKVHAHYFMPLCGT---YFENNNPEPLEKEVLDILG 349

Query: 396 KKLREQQV 403
           K  ++ Q+
Sbjct: 350 KMAKKGQI 357


>gi|45358913|ref|NP_988470.1| radical SAM domain-containing protein [Methanococcus maripaludis
           S2]
 gi|45047779|emb|CAF30906.1| conserved hypothetical protein [Methanococcus maripaludis S2]
          Length = 437

 Score =  123 bits (308), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 73/326 (22%), Positives = 130/326 (39%), Gaps = 30/326 (9%)

Query: 61  DADLIVLN---TCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEI 117
            +D+++L+   T +I +   +    +L      K+  IK      + VAG V  A  E I
Sbjct: 44  KSDIVILSLYSTLNIIDPVIKDTVDYL------KSKNIK------IYVAGPV-SAYPEII 90

Query: 118 LRRSPIVNVVVG------PQTYYRLPELLERARFGKRVVDTDYSVED--KFERLSIVDGG 169
           L    +  V++G      P+      + L     G+ +V+   S  D    +     D  
Sbjct: 91  LNELNVDGVILGEGELTTPEIINGSKDGLAYFENGEMIVNKPKSKPDLDFSKIYVPKDIA 150

Query: 170 YNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI-EISRSLSQVVDEARKLIDNGVCEITLL 228
               RG   ++    GC   CTFC VP   G    S+ +  +++E  +L  NGV  I + 
Sbjct: 151 AQNVRGANVYIETHRGCLGHCTFCQVPEFFGRDIRSKPIELIIEEVNELKKNGVNRIAIS 210

Query: 229 GQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLM 288
           G    +         K  F +++ S+S I G   L         + + ++ A  +  +  
Sbjct: 211 GG-TGSLYNFKNTVNKNKFIEMIESVSNIIGRQNLSVPDMRVDYVDEEVLNAIKNYSI-- 267

Query: 289 PYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFR 348
            ++   ++SGSD++L SM +   + +  + I+  +     + ++  FIVG P E + DF 
Sbjct: 268 GWVFYGIESGSDKLLNSMKKGTNSKKNLKAIELAKDC--GVKVAGSFIVGHPKEKEVDFL 325

Query: 349 ATMDLVDKIGYAQAFSFKYSPRLGTP 374
            T D +        F     P   T 
Sbjct: 326 MTKDFIVDAELDDVFVSAAEPIPKTE 351


>gi|157781905|gb|ABV72278.1| MiaB [Azospirillum brasilense]
          Length = 133

 Score =  123 bits (308), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 42/131 (32%), Positives = 69/131 (52%), Gaps = 1/131 (0%)

Query: 172 RKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQN 231
            +    AF+ +Q+GCD  CTFC++PY RG   S  +  VV++ + L+  G  E+ L G +
Sbjct: 4   FEDRARAFVQVQQGCDHRCTFCIIPYGRGPSRSVPIGAVVEQVQALVKAGYNEVVLSGVD 63

Query: 232 VNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL 291
           + ++ G  L G       +   L+ +  L RLR ++    ++ D L +       LMP+L
Sbjct: 64  ITSF-GPDLPGTPTLGQMVRRLLALVPELPRLRLSSLDCIEIDDDLWRLIETEPRLMPHL 122

Query: 292 HLPVQSGSDRI 302
           HL +Q+G D I
Sbjct: 123 HLSLQAGDDMI 133


>gi|213584410|ref|ZP_03366236.1| hypothetical protein SentesTyph_25585 [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
          Length = 121

 Score =  122 bits (307), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 42/122 (34%), Positives = 63/122 (51%), Gaps = 3/122 (2%)

Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
              LS++    RL Y   +P       + A G    ++PYL +P+Q  S RILK M R  
Sbjct: 1   CEQLSKLGVWTRLHYVYPYPHVDDVIPLMAEG---KILPYLDIPLQHASPRILKLMKRPG 57

Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370
           +       I + R + P++ + S FIVGFPGET++DF+  +D + +    +   FKYSP 
Sbjct: 58  SVDRQLARIKQWREICPELTLRSTFIVGFPGETEEDFQMLLDFLKEARLDRVGCFKYSPV 117

Query: 371 LG 372
            G
Sbjct: 118 EG 119


>gi|305664219|ref|YP_003860507.1| Radical SAM domain protein [Ignisphaera aggregans DSM 17230]
 gi|304378788|gb|ADM28627.1| Radical SAM domain protein [Ignisphaera aggregans DSM 17230]
          Length = 436

 Score =  122 bits (307), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 68/351 (19%), Positives = 128/351 (36%), Gaps = 19/351 (5%)

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           L  I +      +   + +++  G  A  +    L       VV G +    + E+L   
Sbjct: 69  LMSIIDYIKMIRRVFPNAILIAGGPHASGDPLGTLTNLGFDLVVYG-EGEDTMIEILSSI 127

Query: 144 RFGKRV-------VDTDYSVEDKFERLSIVDGGYNRK--RGVTAFLTIQEGCDKFCTFCV 194
             G          +D    +  K  R   +D        R     + I  GC   C FC 
Sbjct: 128 INGGDPYVCGTAYIDGGKMIVKKRSRYVDLDQYPPFPYWRNTFNPIEIMRGCSASCYFCQ 187

Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQN-VNAWRGKGLDGEKCTFSDLLYS 253
           V Y  G+   RS+ ++V  +  ++ +G+ ++  +  N +      G+  +      L   
Sbjct: 188 VTYLYGVPRYRSIERIVYYSEIMLSSGLKDLRFIAPNSLGYGSSNGIKPDSKVLDLLHQL 247

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLI--KAHGDLDVLM--PYLHLPVQSGSDRILKSMNRR 309
                      +  + P ++    +      ++   +    + +  QSGS+RILK ++R 
Sbjct: 248 RLLANRYGGRIFFGTFPSEVRPDSVEEDFIREIRRFVDNKRIIVGAQSGSNRILKIIHRG 307

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG--YAQAFSFKY 367
           HT+ +    +  +        +  D I GFP ET DD   TM L++K+     +     +
Sbjct: 308 HTSEDIVNAVQILTKY--GFEVDIDLIFGFPFETKDDIEETMKLIEKLKEYRTRFHLHTF 365

Query: 368 SPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI 418
            P  GTP   +L    ++    RL  L  + R      +   + + I  L+
Sbjct: 366 IPLPGTPFIKLLPSPIDDALKHRLYKLIGEGRAYGYWISQEKLSKEIIELV 416


>gi|332157937|ref|YP_004423216.1| hypothetical protein PNA2_0294 [Pyrococcus sp. NA2]
 gi|331033400|gb|AEC51212.1| hypothetical protein PNA2_0294 [Pyrococcus sp. NA2]
          Length = 423

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 79/429 (18%), Positives = 154/429 (35%), Gaps = 78/429 (18%)

Query: 43  RMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSR---IKEGG 99
            +     SQGY+    +   DL  +    I+ +    +YSF  +           +++  
Sbjct: 17  HLLAALESQGYDLSQVLVTKDLKEI----IKARPRVVLYSFYSQEVEEVKREVEILRKEI 72

Query: 100 DLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV---------- 149
           + ++V  G    A  +  L        V+G         L+   R   R+          
Sbjct: 73  NPILVAGGYHVMAMPKHTLNVLGFDIAVIGEGEEALYNLLVTLKRLDYRIGKELTNIRGL 132

Query: 150 --------VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG- 200
                   V T ++  + F +      G      + + + I  GC   C +C  PY +G 
Sbjct: 133 AFYLNGQFVFTGFAKVEDFWKFPPYPEGLK----LVSPMEISRGCPFGCYYCQTPYAKGF 188

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
               R + Q+V  +R++      ++  +  N  A+   G   +      LL +L  ++  
Sbjct: 189 RMRHRPIDQIVKYSRRM-----KDMRYITPNAFAYGSPGGILKVEKVEALLKALQPLRRE 243

Query: 261 VRLRYTTSHPRDM--------SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
            R  +  + P ++        +  L+  + D   L     +  QSG D +LK+M+R H  
Sbjct: 244 GRRLFYGTFPSEVRPDFVTRETVELLIDYTDTRRLA----IGAQSGDDAMLKAMHRVHKV 299

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI--GYAQAFSFKYSPR 370
                 ++        +    DFIVG P ET +  R +++L+  I     +  +  + P 
Sbjct: 300 EHVVNAVELALEY--GLEPVVDFIVGLPNETPESQRKSIELMKWIIRKGGKVRAHYFMPL 357

Query: 371 LGTPGSN-MLEQVDENVKA----------------------ERLLCLQKKLREQQVSFND 407
            GTP +      + E +K                       +RL  L ++  E+ +S++ 
Sbjct: 358 PGTPWARCKPSPLSEEMKKFLGRMAAKGYIEGSWGVQIEISKRLQRLIEEFYEEPMSYH- 416

Query: 408 ACVGQIIEV 416
              G++ E+
Sbjct: 417 ---GKVKEI 422


>gi|150402520|ref|YP_001329814.1| radical SAM domain-containing protein [Methanococcus maripaludis
           C7]
 gi|150033550|gb|ABR65663.1| Radical SAM domain protein [Methanococcus maripaludis C7]
          Length = 437

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 68/326 (20%), Positives = 125/326 (38%), Gaps = 30/326 (9%)

Query: 61  DADLIVLN---TCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEI 117
            +D+++ +   T +I +   ++   +L               ++ + +AG V  A  E I
Sbjct: 44  KSDIVIFSLYSTLNIIDPVIKETIDYLK------------SKNVKIYIAGPV-SAYPEII 90

Query: 118 LRRSPIVNVVVG------PQTYYRLPELLERARFGKRVVDTDYSVED--KFERLSIVDGG 169
           L    +  V++G      P+      E L     G+ +V+      D    +     D  
Sbjct: 91  LNELTVDGVILGEGELTTPEIVSGSTEGLAYIENGEIIVNNPKIKPDLDFSKIYVPKDIE 150

Query: 170 YNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI-EISRSLSQVVDEARKLIDNGVCEITLL 228
               RG   ++    GC   CTFC VP   G    S+ +  +++E  +L  NGV  I + 
Sbjct: 151 AQNVRGANVYIETHRGCLGHCTFCQVPEFFGRDIRSKPIELIIEEVMELKKNGVKRIAIS 210

Query: 229 GQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLM 288
           G    +         K  F +++ S+S I G   L         + + ++ A     +  
Sbjct: 211 GG-TGSLYNFKNTVNKNKFIEMIESVSNIIGRENLSVPDMRVDYVDEEVLNAIKTYSI-- 267

Query: 289 PYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFR 348
            ++   ++SGSD++L SM +     +  + I+  +     + ++  FIVG P E + DF 
Sbjct: 268 GWVFYGIESGSDKLLNSMKKGTNTKKNLKAIELAKDC--GVKVAGSFIVGHPKEKEVDFL 325

Query: 349 ATMDLVDKIGYAQAFSFKYSPRLGTP 374
            T D +        F     P   T 
Sbjct: 326 MTKDFIVDAELDDVFVSAAEPIPRTE 351


>gi|218883344|ref|YP_002427726.1| Fe-S oxidoreductase family protein [Desulfurococcus kamchatkensis
           1221n]
 gi|218764960|gb|ACL10359.1| Fe-S oxidoreductase family protein [Desulfurococcus kamchatkensis
           1221n]
          Length = 439

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 55/264 (20%), Positives = 104/264 (39%), Gaps = 25/264 (9%)

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE- 202
           R   +V+ T  +     ++           R +   L I  GC   C +C V Y  G+  
Sbjct: 143 REEDKVIATGRARPIDLDKHDPFPYW----RRIINPLEITRGCPYGCLYCQVSYIHGMSY 198

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT------FSDLLYSLSE 256
             RS+ ++V   +++   GV +   +  +  ++    +  E  T       S +  +L  
Sbjct: 199 RHRSIEKIVFYVKEMARIGVRDYRFITPDSLSYGLTKISREPDTGLIEELLSSIHSALRS 258

Query: 257 IKGLVRLRYTTSHPR--DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
           I G +      S  R   ++  +++           + +  QSGS+R+L+ + R H+  +
Sbjct: 259 IGGRIFYGSFPSEVRPEHVNKDVVRVLRKYVN-NREIIVGAQSGSNRVLRLIRRGHSVED 317

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI--GYAQAFSFKYSPRLG 372
               +  I         S D I+G PGET +D   T++L+D++     +     Y P  G
Sbjct: 318 VLNAVKEISEN--GFTPSVDIILGIPGETREDQELTLELIDEVIRNNGRIHIHYYLPLPG 375

Query: 373 TPG-----SNMLEQVDENVKAERL 391
           +P      + +   +   VK  RL
Sbjct: 376 SPLGLHPPARIPNDI--EVKISRL 397


>gi|154249715|ref|YP_001410540.1| radical SAM domain-containing protein [Fervidobacterium nodosum
           Rt17-B1]
 gi|154153651|gb|ABS60883.1| Radical SAM domain protein [Fervidobacterium nodosum Rt17-B1]
          Length = 393

 Score =  121 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 65/287 (22%), Positives = 112/287 (39%), Gaps = 22/287 (7%)

Query: 98  GGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVE 157
               +++  G  A A  +E L +     V  G        E + R   G+R  +  +   
Sbjct: 73  KHGYIIIAGGPHATALPQETL-KIGFDYVFTG-----DGEENIVRFLLGERPENRIFDGI 126

Query: 158 DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI-EISRSLSQVVDEARK 216
            K   L         K+ +   L I  GC   C +C  P   G     RS+ Q+V+  + 
Sbjct: 127 SKRINLDEYPAICE-KKKLFMPLEISRGCPFNCGYCQTPRLAGKIVRHRSIEQIVEYEKI 185

Query: 217 LIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK--GLVRLRYT----TSHP 270
            +  G      +  N  A+     +G       +   L ++K  G+  + +        P
Sbjct: 186 SVKYGKTIARFITPN--AFGYGSKNGVTPNLEAIDELLYKVKATGVTEIYFGTFPSDVRP 243

Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330
             ++D ++K          Y+ +  QSGS+RIL+ + R HT  +  + ++ +   +    
Sbjct: 244 ESVTDEVLKIIKKYVN-HDYIVIGAQSGSNRILEKIQRGHTVEKVEEALEIL--AQNGFY 300

Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKI--GY-AQAFSFKYSPRLGTP 374
              DFI GFP ET +D   T   ++KI   Y A+  +  + P  GTP
Sbjct: 301 AKVDFIFGFPFETKEDVEETFKFIEKIVKKYNAKIHAHTFMPLPGTP 347


>gi|322513300|ref|ZP_08066421.1| MiaB family RNA modification enzyme [Actinobacillus ureae ATCC
           25976]
 gi|322120899|gb|EFX92751.1| MiaB family RNA modification enzyme [Actinobacillus ureae ATCC
           25976]
          Length = 125

 Score =  121 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 61/122 (50%), Gaps = 6/122 (4%)

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDAC 409
            +D +++    +   FK+SP  G   + + +QV E+VK +R     +  +    +     
Sbjct: 2   LLDFLEEAQLDRVGCFKFSPVEGAVATEIADQVPEDVKEDRFHRFMQVQQRISAARLQQK 61

Query: 410 VGQIIEVLIEKHGKEK--GKLVGRSPWLQSVV----LNSKNHNIGDIIKVRITDVKISTL 463
           VG+ + V++++  +E   G+ +  +P +  VV    +++++  +G II V IT+     L
Sbjct: 62  VGKTLAVIVDEIDEEGIIGRSMADAPEIDGVVYVDNISNQDVKVGQIISVTITNADEYDL 121

Query: 464 YG 465
           +G
Sbjct: 122 WG 123


>gi|134045273|ref|YP_001096759.1| radical SAM domain-containing protein [Methanococcus maripaludis
           C5]
 gi|132662898|gb|ABO34544.1| Radical SAM domain protein [Methanococcus maripaludis C5]
          Length = 441

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 61/274 (22%), Positives = 106/274 (38%), Gaps = 14/274 (5%)

Query: 110 AQAEGEEILRRSPIVNVVVG------PQTYYRLPELLERARFGKRVVDTDYSVED--KFE 161
             A    IL    I  V++G      P+      E L     G+ +++   S  D    +
Sbjct: 87  VSAYPGIILGELNIDGVILGEGEIKTPEIINGSTEGLAYLENGEIIINKPKSKPDLDFSK 146

Query: 162 RLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI-EISRSLSQVVDEARKLIDN 220
                D      RG   ++    GC   CTFC VP   G    S+ +  +++E ++L  N
Sbjct: 147 IYVPKDIETQNVRGANVYIETHRGCLGHCTFCQVPEFFGRDIRSKPIELIIEEVKELKKN 206

Query: 221 GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKA 280
           GV  I + G    +         K  F +++ S+S I G   L         + + ++ A
Sbjct: 207 GVKRIAISGG-TGSLYNFKNTVNKNKFIEMIESVSNIIGRGNLSVPDMRVDYVDEEVLNA 265

Query: 281 HGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFP 340
             +  +   ++   ++SGSD++L SM +     +  + I+  +     + ++  FIVG P
Sbjct: 266 IKNYSI--GWVFYGIESGSDKLLNSMKKGTNTKKNLKAIELAKDC--GVKVAGSFIVGHP 321

Query: 341 GETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
            E + DF  T D +        F     P   T 
Sbjct: 322 KEKEVDFLMTKDFIVDAELDDVFVSAAEPIPRTE 355


>gi|307354216|ref|YP_003895267.1| Radical SAM domain-containing protein [Methanoplanus petrolearius
           DSM 11571]
 gi|307157449|gb|ADN36829.1| Radical SAM domain protein [Methanoplanus petrolearius DSM 11571]
          Length = 379

 Score =  120 bits (301), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 62/311 (19%), Positives = 116/311 (37%), Gaps = 25/311 (8%)

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
            ++  IR+ K   I  G     +    +A+     ++     V   +           L 
Sbjct: 51  HYIDEIRDAKCVTIVGGPHPSALPGE-MAEVADYVVVGEGEYVLPKLLKMIMSDADNFLV 109

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           +   G     T ++  D+   L         K      + I  GC   C +C  P   G 
Sbjct: 110 QQLPG-VATKTGFTPNDRCVLLDYYPPFTQAKSA----VEISRGCPFRCGYCQTPRLFGG 164

Query: 202 -EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
               RS+ ++V            ++  L  N  A+   G +G +     +   LS     
Sbjct: 165 CMRHRSVDEIVK-----ASKIYTDVRFLTPNALAY---GSNGREFLPEKVEKLLSSFSKD 216

Query: 261 VRLRYTTSHPRDMSDCLI--KAHGDLDVLM--PYLHLPVQSGSDRILKSMNRRHTAYEYR 316
             + Y  + P ++    I  +A   ++       +H   QSGS+R+L  ++R HT  +  
Sbjct: 217 QNV-YLGTFPSEVRPEFINDEAIDLIEKYCANKKIHFGAQSGSERVLSLLHRGHTCDDVI 275

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI-GYAQAFSFKYSPRLGTP- 374
           + ++         A   D+IVG P ET++D  AT++ +  +  + +  +  ++P  GTP 
Sbjct: 276 RAVELCHER--GFAPVVDYIVGIPFETEEDQMATVEQMRWVSRFGKIHAHYFTPLPGTPL 333

Query: 375 -GSNMLEQVDE 384
            G+   E + E
Sbjct: 334 AGTEPSELIPE 344


>gi|289191637|ref|YP_003457578.1| Radical SAM domain protein [Methanocaldococcus sp. FS406-22]
 gi|288938087|gb|ADC68842.1| Radical SAM domain protein [Methanocaldococcus sp. FS406-22]
          Length = 500

 Score =  119 bits (299), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 53/296 (17%), Positives = 108/296 (36%), Gaps = 24/296 (8%)

Query: 187 DKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQN----------VNAWR 236
           +  C FC VP   G   SR    ++ E   L++ GV  I L   +          +N   
Sbjct: 213 NPGCGFCSVPSVFGYARSRDEEDILKEVESLLEEGVKRIVLSAPDFLDYERGERLINPNF 272

Query: 237 GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQ 296
            +       +       L++ K    +           + + +           +++  +
Sbjct: 273 PEPNYEAIESLLSNCKDLAD-KYNANILIENIKANLFDERVAEIFSKYLKTP--IYIGCE 329

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
           SG     + + R  T  +  + +   +    ++      I G PGE  D  + T++ + K
Sbjct: 330 SGDKEHCRLLGRPATPDDVLKAVKIAKKY--NLKAQVYLIYGLPGENKDTAKNTVNFMHK 387

Query: 357 IG--YAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQII 414
           I     +   +K+ P   +   N    + ++      L +++   +  +      VG+++
Sbjct: 388 IKPYIDKITVYKFRPLPMSAFQNFKPNITKH-----SLLIRETANKINLEIKKKYVGKVL 442

Query: 415 EVLI-EKHGKEKGKLVGRSPW-LQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           EV+I E+H + K   +G  P     VV+      IG   KV+I       L G+++
Sbjct: 443 EVIISERHFRNKRDAIGYLPDSGLMVVVKDGAKFIGKTKKVKIIKAYEKYLEGKII 498


>gi|256811437|ref|YP_003128806.1| Radical SAM domain protein [Methanocaldococcus fervens AG86]
 gi|256794637|gb|ACV25306.1| Radical SAM domain protein [Methanocaldococcus fervens AG86]
          Length = 500

 Score =  119 bits (299), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 59/293 (20%), Positives = 116/293 (39%), Gaps = 18/293 (6%)

Query: 187 DKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNV-NAWRGKGL--DGE 243
           +  C FC VP   G   SR    ++ E   L+  GV  I L   +  +  RGK L     
Sbjct: 213 NPGCGFCSVPSVFGYARSRDEEDILKEVEDLLKEGVKRIVLSAPDFLDYKRGKKLINPYF 272

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY----LHLPVQSGS 299
                + + SL      +  +Y  +   +     +      ++   Y    +++  +SG 
Sbjct: 273 PEPNYEAIESLLSKCKDLADKYNANVLIENIKANLFNEKVAEIFSKYLKTPIYIGCESGD 332

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG- 358
           +R  K + R  T  +  + +   +    ++     FI G PGE +   + T++ + KI  
Sbjct: 333 ERHCKLLGRPTTPEDVLKAVKIAKKY--NLKAQVYFIYGLPGENEKVAKNTVNFMHKIKH 390

Query: 359 -YAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVL 417
              +   +K+ P   +   N    + ++      L +++   +  +      +G+++EV+
Sbjct: 391 YIDKITVYKFRPLPMSAFQNFKPNITKH-----SLLIRETANKINLEIKKKYIGRVLEVI 445

Query: 418 I-EKHGKEKGKLVGRS-PWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           I E+H + K   +         VV+      IG+I KV+IT      L G ++
Sbjct: 446 ISERHFRNKRDAIAYLQDSGLMVVVKDGAKCIGEIKKVKITKAYEKYLEGRIL 498


>gi|224537219|ref|ZP_03677758.1| hypothetical protein BACCELL_02096 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224521175|gb|EEF90280.1| hypothetical protein BACCELL_02096 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 122

 Score =  119 bits (299), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 37/109 (33%), Positives = 67/109 (61%), Gaps = 5/109 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ F+++YGCQMNV DS  +  +    GY   +++++AD + +NTC IR+ A +K+ + L
Sbjct: 18  KKLFIETYGCQMNVADSEVIASVMQMAGYSTADTLEEADAVFMNTCSIRDNAEQKILNRL 77

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTY 133
               +LK    K+  +L+V V GC+A+   ++++     V++VVGP  Y
Sbjct: 78  EFFYSLK----KKKRNLIVGVLGCMAERVKDDLITNH-HVDLVVGPDAY 121


>gi|41614944|ref|NP_963442.1| hypothetical protein NEQ148 [Nanoarchaeum equitans Kin4-M]
 gi|40068668|gb|AAR39003.1| NEQ148 [Nanoarchaeum equitans Kin4-M]
          Length = 444

 Score =  119 bits (299), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 50/233 (21%), Positives = 95/233 (40%), Gaps = 27/233 (11%)

Query: 155 SVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG-IEISRSLSQVVDE 213
            VED ++     +        +   + I  GC   C +C  P+ +G     R + Q+V  
Sbjct: 146 KVEDFYKYPPFAESI-----RMVGPIEISRGCPFGCNYCQTPFFKGFRMRHRPIDQIVKH 200

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
           +R      + ++  +  N  A+   G          LL +L  ++   R  +  + P ++
Sbjct: 201 SRY-----LRDMRYISPNAFAYGSPGAILVLEKLEALLRALQPLRKEGRRLFFGTFPSEV 255

Query: 274 --------SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
                   +  L+  + D   ++    +  QSG +RILK M+R H     ++ ++   S+
Sbjct: 256 RPEFVIPETLELLLKYADNRKII----IGAQSGDNRILKLMHRLHDVETIKRAVEY--SI 309

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKI--GYAQAFSFKYSPRLGTPGS 376
                   DFIVG P E ++  R T++L+  I     +  +  + P  GTP +
Sbjct: 310 EYGFTPIVDFIVGTPYEDEESDRNTIELMKWIISKGGKVRAHYFMPLPGTPWA 362


>gi|167948741|ref|ZP_02535815.1| hypothetical protein Epers_20333 [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 139

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 51/107 (47%)

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
           +I R R+  P++ + S FIVGFPGET+ +F   +  + +    +   F YSP  G   + 
Sbjct: 1   MIQRWRTECPELVLRSTFIVGFPGETEAEFEELLAFLREAQLDRVGCFAYSPVAGATANQ 60

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE 424
           +   + + ++ +R     +           A +G  + VL+++  ++
Sbjct: 61  LPGALPDEIREQRRARFMEVQSAISAERLAAKIGSEMIVLVDEVNEK 107


>gi|297618573|ref|YP_003706678.1| Radical SAM domain-containing protein [Methanococcus voltae A3]
 gi|297618633|ref|YP_003706738.1| Radical SAM domain-containing protein [Methanococcus voltae A3]
 gi|297377550|gb|ADI35705.1| Radical SAM domain protein [Methanococcus voltae A3]
 gi|297377610|gb|ADI35765.1| Radical SAM domain protein [Methanococcus voltae A3]
          Length = 490

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 48/233 (20%), Positives = 87/233 (37%), Gaps = 10/233 (4%)

Query: 158 DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI-EISRSLSQVVDEARK 216
           D  + L   D      RG   ++    GC   CTFC VP   G    S+ L  ++ E + 
Sbjct: 187 DFSDLLIPKDIEKQSIRGANVYIETHRGCLGNCTFCQVPEFFGRDIRSKPLELILKEVKN 246

Query: 217 LIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDC 276
           L  +GV  I + G    +         +  F +++  +S + G   L         +   
Sbjct: 247 LKKHGVKRIAISGG-TGSLYNFKKSSNRNLFIEMIEKVSSMVGSKNLSVPDMRVDYVDSD 305

Query: 277 LIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFI 336
           ++ A  +    + ++   ++SGS+++L  M +     +    I   +     + +   FI
Sbjct: 306 ILTAVRN--NTVGWVFYGIESGSNKLLSDMKKGTNPEKNLNAIKLAKDC--GVKVGGSFI 361

Query: 337 VGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAE 389
           VG+P E + D+  T D +        F     P   T    +  +V    K E
Sbjct: 362 VGYPTEREVDYLMTKDFLVDAELDDVFVSSAEPIPKT---RLCNKV-LETKKE 410


>gi|297619908|ref|YP_003708013.1| Radical SAM domain-containing protein [Methanococcus voltae A3]
 gi|297378885|gb|ADI37040.1| Radical SAM domain protein [Methanococcus voltae A3]
          Length = 389

 Score =  118 bits (297), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 64/352 (18%), Positives = 125/352 (35%), Gaps = 43/352 (12%)

Query: 63  DLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSP 122
           D+I+ +   +++    +  + L           K   +++++  G  A    E+ L+   
Sbjct: 56  DIIIYSFMSLQKSIVLQELNILR----------KNFKNIVLIAGGPHASGAPEDTLKM-- 103

Query: 123 IVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTI 182
             + V+  +    LP+L+ +    +++ +         + + I       K    A + I
Sbjct: 104 GFDYVIIGEGEISLPDLVNKIENNQKIEN------RIIKGVPIDSFEGYDKIYPLAPIEI 157

Query: 183 QEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD 241
             GC   C FC  P   G     R +  +V   +      + +I  +  N  +  G    
Sbjct: 158 TRGCPYNCRFCQTPQIFGKNIRHRKIDDIVKIVK-----NMKDIRFVTPNALS-YGSKYA 211

Query: 242 GEKCTFSDLLYSLSEIKGLVRL-------RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP 294
            +              +   RL               + +  LI  + D      YLH  
Sbjct: 212 TKPNLEKLEELLKKLSEFKERLFLGTFPSEVRPEFINEETLNLILTYCDN----KYLHFG 267

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
            QSG D +LK + R HT  +    ID  +  +  +    DFI GFP ET ++   +++L+
Sbjct: 268 AQSGCDEMLKYIRRGHTVNDVLNAIDLCKKNK--LMPKVDFIFGFPNETIENRLKSIELM 325

Query: 355 DKI--GYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVS 404
             I        +  + P  GT      ++    +  E +  L    ++ Q+S
Sbjct: 326 KYIIKKNGTVHAHYFMPLPGT---YFEKEKPTELDKETIKILGSMAKKGQIS 374


>gi|15669816|ref|NP_248630.1| hypothetical protein MJ_1620 [Methanocaldococcus jannaschii DSM
           2661]
 gi|38258711|sp|Q59015|Y1620_METJA RecName: Full=Uncharacterized protein MJ1620
 gi|1500519|gb|AAB99641.1| conserved hypothetical protein [Methanocaldococcus jannaschii DSM
           2661]
          Length = 505

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 54/293 (18%), Positives = 110/293 (37%), Gaps = 18/293 (6%)

Query: 187 DKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC- 245
           +  C FC VP   G   SR    ++ E   L+  GV  I L   +   ++          
Sbjct: 213 NPGCGFCSVPSVFGYARSRDEEDILKEVEALLKEGVNRIVLSAPDFLDYKRGEKLINPYF 272

Query: 246 --TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY----LHLPVQSGS 299
                + + SL      +  +Y  +   +     +      ++   Y    +++  +SG 
Sbjct: 273 PEPNYEAIESLLSKCKDLADKYNANVLIENIKANLFNEKVAEIFSKYLKTPIYIGCESGD 332

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG- 358
               K + R  T  +  + +   +    ++     FI G PGE ++  + T++ + KI  
Sbjct: 333 KNHCKLLGRPTTPDDVLKAVKIAKKY--NLKAQVYFIYGLPGENEETAKNTVNFMHKIKN 390

Query: 359 -YAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVL 417
              +   +K+ P   +   N    +      +  L +++   +  +      +G+++EV+
Sbjct: 391 YIDKITVYKFRPLPMSAFQNFKPNI-----TKYSLLIRETANKINLEIKKKYIGRVLEVI 445

Query: 418 I-EKHGKEKGKLVGRSPW-LQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           I E+H + K   +G  P     VV+      IG   KV+I       L G ++
Sbjct: 446 ISERHFRNKRDAIGYLPDSGLMVVVKDGAKFIGKTKKVKIIKAYEKYLEGRIL 498


>gi|261402173|ref|YP_003246397.1| Radical SAM domain protein [Methanocaldococcus vulcanius M7]
 gi|261369166|gb|ACX71915.1| Radical SAM domain protein [Methanocaldococcus vulcanius M7]
          Length = 498

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 54/296 (18%), Positives = 112/296 (37%), Gaps = 24/296 (8%)

Query: 187 DKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC- 245
           +  C FC VP   G   SR+   V+ E   L++ GV  I L   +   ++          
Sbjct: 211 NPGCGFCSVPSVFGYARSRNEEDVLKEIEALLEEGVKRIVLSAPDFLDYKRGEKLINPYF 270

Query: 246 ---------TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQ 296
                    T       L++ K    +          ++ + +       L   +++  +
Sbjct: 271 PEPNYEVIETLLSNCRDLAD-KYNANILIENIKANLFNEKVAEIFSKY--LRTPIYIGCE 327

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
           SG +   K + R  +  +  + +   +    ++     FI G PGET++  + T+  + K
Sbjct: 328 SGDENHCKLLGRPTSPSDVLRAVKIAKKY--NLKAQVYFIYGLPGETEETAKNTVRFMHK 385

Query: 357 IG--YAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQII 414
           I     +   +K+ P   +   N    +      +  L +++   +  +      +G+++
Sbjct: 386 IKNYIDKITVYKFRPLPMSAFQNFKPNI-----TKYSLLIRETANKINLEIKKRYIGRVL 440

Query: 415 EVLI-EKHGKEKGKLVGRSPW-LQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           EV+I E+H + +   +G  P     +V+      IG   KV+I       L G+L+
Sbjct: 441 EVIISERHFRNRRDAIGYLPDSGLMIVVKDGAKFIGKTKKVKIVKAYEKYLEGKLL 496


>gi|124516092|gb|EAY57601.1| putative radical SAM superfamily transporter [Leptospirillum
           rubarum]
          Length = 445

 Score =  118 bits (295), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 70/326 (21%), Positives = 124/326 (38%), Gaps = 37/326 (11%)

Query: 63  DLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSP 122
           DL+ + T      +A++ Y   GR R  K         + VV+ G  A     EIL    
Sbjct: 65  DLVAITT---TTGSAQRAYQIAGRFRERK---------IPVVMGGFHATLHPAEILT--- 109

Query: 123 IVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGY-----NRKRGVT 177
             + VV  +      ELL+  R GK  + + Y  E   +  S+    Y      R R   
Sbjct: 110 HADSVVVGEAENVWGELLDDVRDGK--LRSIYKAEQPCDMKSLPRPKYELLDWKRYRVHL 167

Query: 178 AFLTIQEGCDKFCTFCVVPYTR-GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR 236
             +    GC+  C FC VP    G    R +  +V E  +          + G N   + 
Sbjct: 168 MPIQATRGCNYHCDFCEVPVVYNGAYRMRPIEDIVQEIEEQK-------RITGNNQFQFI 220

Query: 237 GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQ 296
              L G+     +L  +L  + G+      T +     + L  A         ++++ ++
Sbjct: 221 DDQLTGKHTFARELFKALRPL-GITWSCLWTLNTNHDEELLDLAIQAG---CQHVNIGME 276

Query: 297 SGSDRILKSMNRR-HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
           S +   L  ++++ +   +Y  ++  +      +  S + + G   +T D F AT   ++
Sbjct: 277 SINQDNLNEIHKKQNHVKDYMTLLKAMEKR--GLLYSLNLMFGLDHDTPDVFEATYRFLE 334

Query: 356 KIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           ++    AF    SPR GTP    L++
Sbjct: 335 EVRAPMAFFSIVSPREGTPLRERLDK 360


>gi|206601887|gb|EDZ38369.1| Putative radical SAM superfamily transporter [Leptospirillum sp.
           Group II '5-way CG']
          Length = 445

 Score =  117 bits (294), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 69/326 (21%), Positives = 123/326 (37%), Gaps = 37/326 (11%)

Query: 63  DLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSP 122
           DL+ + T      +A++ Y    R R  K         + VV+ G  A     EIL    
Sbjct: 65  DLVAVTT---TTGSAQRAYQIARRFRERK---------VPVVMGGFHATLHPAEILT--- 109

Query: 123 IVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGY-----NRKRGVT 177
             + VV  +      ELL+  R GK  + + Y  E   +  S+    Y      R R   
Sbjct: 110 HADSVVVGEAENVWGELLDDVRNGK--LRSIYKAEQPCDMKSLPRPRYELLDWKRYRVHL 167

Query: 178 AFLTIQEGCDKFCTFCVVPYTR-GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR 236
             +    GC+  C FC VP    G    R +  +V E  +          + G N   + 
Sbjct: 168 MPIQATRGCNYHCDFCEVPVVYNGAYRMRPIEDIVQEIEEQK-------RITGNNQFQFI 220

Query: 237 GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQ 296
              L G+     +L  +L  + G+      T +     + L  A         ++++ ++
Sbjct: 221 DDQLTGKHTFARELFKALRPL-GITWSCLWTLNTNHDEELLDLAIQAG---CQHVNIGME 276

Query: 297 SGSDRILKSMNRR-HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
           S +   L  ++++ +   +Y  ++  +      +  S + + G   +T D F AT   ++
Sbjct: 277 SINQDNLNEIHKKQNHVKDYMTLLRAMEKR--GLLYSLNLMFGLDHDTPDVFEATYRFLE 334

Query: 356 KIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           ++    AF    SPR GTP    L++
Sbjct: 335 EVRAPMAFFSIVSPREGTPLRERLDK 360


>gi|213616143|ref|ZP_03371969.1| MiaB protein (putative tRNA-thiotransferase (or
           tRNA-methylthiotransferase)) [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
 gi|289805050|ref|ZP_06535679.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella
           enterica subsp. enterica serovar Typhi str. AG3]
          Length = 97

 Score =  116 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 45/99 (45%), Positives = 65/99 (65%), Gaps = 5/99 (5%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++  +K++GCQMN YDS +M D+  +  GY+  +  ++AD+++LNTC IREKA EKV+
Sbjct: 1   MTKKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTDVAEEADVLLLNTCSIREKAQEKVF 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRR 120
             LGR R LK        DL++ V GCVA  EGE I +R
Sbjct: 61  HQLGRWRLLKEK----NPDLIIGVGGCVASQEGEHIRQR 95


>gi|213027665|ref|ZP_03342112.1| MiaB protein (putative tRNA-thiotransferase (or
           tRNA-methylthiotransferase)) [Salmonella enterica subsp.
           enterica serovar Typhi str. 404ty]
          Length = 124

 Score =  116 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 48/90 (53%), Gaps = 1/90 (1%)

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSV 438
           + V E  K +RL  LQ+++ +Q ++++   +G    +L+E   ++   +L GR+   + V
Sbjct: 1   DDVPEEEKKQRLYILQERINQQAMAWSRRMLGTTQRILVEGTSRKNIMELSGRTENNRVV 60

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468
                   IG  + V ITDV  ++L G++V
Sbjct: 61  NFEGTPEMIGKFVDVEITDVYPNSLRGKVV 90


>gi|124027620|ref|YP_001012940.1| Fe-S oxidoreductase [Hyperthermus butylicus DSM 5456]
 gi|123978314|gb|ABM80595.1| predicted Fe-S oxidoreductase [Hyperthermus butylicus DSM 5456]
          Length = 453

 Score =  116 bits (292), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 66/297 (22%), Positives = 118/297 (39%), Gaps = 26/297 (8%)

Query: 103 VVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFE- 161
           VVV G  A+    ++LR      VV            L     G+R +D   ++  + + 
Sbjct: 86  VVVGGPHAEGAYWQLLRMGVYAAVV---GDGENTVVALAEHFLGERSLDDVPNIALRDDG 142

Query: 162 -----RLSIVD----GGYNRKRGVTAFLTIQEGCDKFCTFCVVPY-TRGIEISRSLSQVV 211
                R+ +VD      ++R+  +   + I  GC   C FC VP+  +     RS S V 
Sbjct: 143 RFRITRIELVDLDSYMPHSRRYRLYPPIEIMRGCPFRCRFCQVPWLFKARVRYRSPSVVE 202

Query: 212 DEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC--TFSDLLYSLSEIKGLVRLRYTTSH 269
           +  R  +  G   I  +   +         GE       +LL ++    G+  L    S 
Sbjct: 203 EAVRDYVAAGKKHIRFVAP-IGFAYMSRRPGEPNVEAIEELLTAVRRAGGIPYLGTFPSE 261

Query: 270 PR--DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
            R   ++  +++    L      + L +QSG +R+L+  +R HT  +  + ++ +  VR 
Sbjct: 262 TRPEYVTPEVLEVVKRL-AANRRIALGLQSGDNRVLEVSDRGHTVEQVFEAVELV--VRY 318

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLV---DKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
                 D + G PGE ++    T+D +    ++G AQ     + P  GTP +    +
Sbjct: 319 GFRPVVDILFGLPGEDEEAVEKTVDAMYKLAEMG-AQLRLHTFIPLPGTPFAKAKPK 374


>gi|91773434|ref|YP_566126.1| radical SAM family Fe-S protein [Methanococcoides burtonii DSM
           6242]
 gi|91712449|gb|ABE52376.1| Radical SAM family protein with UPF0004 domain [Methanococcoides
           burtonii DSM 6242]
          Length = 368

 Score =  116 bits (291), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 65/286 (22%), Positives = 108/286 (37%), Gaps = 22/286 (7%)

Query: 102 LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKF- 160
           + +  G       E+ L     V +  G +T   L   L       +V    Y    K  
Sbjct: 60  ICIAGGPHPSGSVEDTLDHFNFVVIGEGEETLPHLVNTLLEGGDVSKVKGIGYKCNGKVV 119

Query: 161 -----ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEA 214
                + + + +      + + + + I  GC   C +C  P   G E   RS+  +V  A
Sbjct: 120 LTGKRDHVDLDNYPCFDSKALRSPIEISRGCPWNCKYCQTPRIFGHEMRHRSIDSIVSFA 179

Query: 215 RKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMS 274
           +   D     +     N  A+ G G+         LL  LS I G  +  +  + P ++ 
Sbjct: 180 KYYND-----LRFTSSNAFAYGGNGIQPRFDKVEALLSKLSSIVG--KNIFFGTFPSEIR 232

Query: 275 DCLI--KAHGDLDVLM--PYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330
              +  +    +D       + L  QSGSD ILK M R HT+ +    ++R      +I 
Sbjct: 233 PEFVTHEGLDLIDKYCSNRTISLGAQSGSDIILKEMLRGHTSEDVNIAVERCFE--HEII 290

Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKI--GYAQAFSFKYSPRLGTP 374
              DFI GFP E ++D + T++ +  I     +  +   SP   TP
Sbjct: 291 PVVDFIFGFPNEAEEDQQRTLEQIKWICKKGGKVRAHYLSPLPSTP 336


>gi|330720103|gb|EGG98514.1| Ribosomal protein S12p Asp88 methylthiotransferase [gamma
           proteobacterium IMCC2047]
          Length = 129

 Score =  116 bits (291), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 54/123 (43%), Gaps = 4/123 (3%)

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDAC 409
            +D +++    +   FKYSP  G   +++ + V E +K ER     +  +          
Sbjct: 2   LLDWLEEAQLDRVGCFKYSPVEGATANDLPDHVPEEIKEERWQRFMETQQAISAQRLQQK 61

Query: 410 VGQIIEVLIEKHGKEK--GKLVGRSPWLQS-VVLNS-KNHNIGDIIKVRITDVKISTLYG 465
           +GQ +EVLI+   ++   G+    +P +   V L+   +   GD + V IT      L+ 
Sbjct: 62  IGQQLEVLIDAVDEDGAIGRCYADAPEIDGKVYLDGFTDTFAGDALLVTITGADEYDLWA 121

Query: 466 ELV 468
           E V
Sbjct: 122 EPV 124


>gi|284098392|ref|ZP_06385871.1| tRNA 2-methylthioadenosine synthase [Candidatus Poribacteria sp.
           WGA-A3]
 gi|283830565|gb|EFC34728.1| tRNA 2-methylthioadenosine synthase [Candidatus Poribacteria sp.
           WGA-A3]
          Length = 125

 Score =  116 bits (291), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 37/107 (34%), Positives = 60/107 (56%), Gaps = 4/107 (3%)

Query: 12  HMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCH 71
               Q   Q    +R ++++YGCQMNV DS  M  +    G++ V  +DDAD++++NTC 
Sbjct: 23  PQKPQDTTQQTHQRRVYIETYGCQMNVSDSELMAGILTQSGHQTVTHIDDADVVLVNTCA 82

Query: 72  IREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEIL 118
           IRE A  KV + L  + + K  +     +L++ V GC+AQ   + +L
Sbjct: 83  IRENAETKVINRLQHLNHRKRRQ----PELIIGVCGCMAQHLRDRLL 125


>gi|60280029|gb|AAX16370.1| 2-methylthioadenine synthetase [uncultured murine large bowel
           bacterium BAC 14]
          Length = 185

 Score =  116 bits (291), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 45/143 (31%), Positives = 72/143 (50%), Gaps = 8/143 (5%)

Query: 28  FVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRI 87
            V ++GCQMN  DS ++  +    GYE +   +DADL++ NTC +R+ A ++VY  LG +
Sbjct: 44  AVTTFGCQMNARDSEKLAGILEQAGYELIED-EDADLVIYNTCTVRDNANQRVYGRLGFL 102

Query: 88  RNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERARF 145
               N R K+   + + + GC+ Q E   ++I R    V+++ G    ++  ELL     
Sbjct: 103 ----NGRKKKKPHMKIALCGCMMQEESVIKKIKRSYRFVDLIFGTHNIFKFAELLCTMFE 158

Query: 146 GK-RVVDTDYSVEDKFERLSIVD 167
            +  VVD     E   E L I  
Sbjct: 159 SEGMVVDIWRDTEQIVEDLPIER 181


>gi|153005269|ref|YP_001379594.1| radical SAM domain-containing protein [Anaeromyxobacter sp.
           Fw109-5]
 gi|152028842|gb|ABS26610.1| Radical SAM domain protein [Anaeromyxobacter sp. Fw109-5]
          Length = 495

 Score =  116 bits (290), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 62/230 (26%), Positives = 91/230 (39%), Gaps = 12/230 (5%)

Query: 168 GGYNRKRGVTAFLTIQEGCDKFCTFCVVPY-TRGIEISRSLSQVVDEARKLIDNGVCEIT 226
             +  +      L +  GC   C FC  P+  R     RSL  +   AR L      ++ 
Sbjct: 239 PPFAPRAARIGPLEVTRGCAWACRFCQTPFLFRARFRHRSLESIRRWARHLAALETRDLR 298

Query: 227 LLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLI--KAHGDL 284
           +L  +  +W       +      LL +L E  G  R  +  S P ++    +  +A   L
Sbjct: 299 VLTPSALSWGSPDGGCDLAAIEALLATLREAIGPDRRLFVGSFPSELRPEHVSAEALALL 358

Query: 285 DVLM--PYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGE 342
                   L +  QSGSDR+L SM R H A    +              S DFI G PGE
Sbjct: 359 RRYCDNRTLVIGGQSGSDRLLVSMRRGHDAESVTRAARLALEA--GFTPSVDFIFGLPGE 416

Query: 343 TDDDFRAT---MDLVDKIGYAQAFSFKYSPRLGTP-GSNMLEQVDENVKA 388
           T+DD  AT   M  +  +G A+  +  + P  GTP G     ++D   +A
Sbjct: 417 TEDDRIATRGQMQGLAAMG-ARVHAHAFMPLPGTPWGGAAPGRIDGTTRA 465


>gi|126643043|ref|YP_001086027.1| putative tRNA-i(6)A37 modification enzyme [Acinetobacter baumannii
           ATCC 17978]
 gi|126388927|gb|ABO13425.1| putative tRNA-i(6)A37 modification enzyme [Acinetobacter baumannii
           ATCC 17978]
          Length = 137

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 53/111 (47%), Positives = 75/111 (67%), Gaps = 5/111 (4%)

Query: 36  MNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSR 94
           MN YDS RM D+   S GY   N+ ++AD++++NTC IREKA EKV+S LGR R LK   
Sbjct: 1   MNEYDSHRMADLLGDSHGYVLTNNPNEADILLMNTCSIREKAQEKVFSELGRWRKLKEQ- 59

Query: 95  IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                DL++ V GCVA  EG+ I +R+P V+++ GPQT +RLP++L++   
Sbjct: 60  ---NPDLVIGVGGCVASQEGDNIQKRAPYVDMIFGPQTLHRLPQMLDQHHA 107


>gi|167947810|ref|ZP_02534884.1| hypothetical protein Epers_15212 [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 155

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 33/105 (31%), Positives = 59/105 (56%)

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           M RR  + E+R++++  R   PD+ I+SD IVGFPGET+ D++ ++  V+++G+     F
Sbjct: 1   MARRCKSDEFRRLVEEGRQQVPDLNITSDIIVGFPGETEADWQQSLSFVEQMGFGHLHIF 60

Query: 366 KYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACV 410
            YSPR GT  + +   V   +K +R   L +   + +    +  +
Sbjct: 61  AYSPRSGTKAAGLPNPVPREIKRQRSEQLHQLGEQMKREMLERQL 105


>gi|225389118|ref|ZP_03758842.1| hypothetical protein CLOSTASPAR_02864 [Clostridium asparagiforme
           DSM 15981]
 gi|225044817|gb|EEG55063.1| hypothetical protein CLOSTASPAR_02864 [Clostridium asparagiforme
           DSM 15981]
          Length = 119

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 33/119 (27%), Positives = 53/119 (44%), Gaps = 1/119 (0%)

Query: 351 MDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACV 410
           MD+V ++ +  AF+F YS R GTP ++M  QV E+V  ER   L  +++          V
Sbjct: 1   MDVVRRVEFDSAFTFIYSKRTGTPAASMENQVPEDVVRERFDRLLNEVQSISAKICGRDV 60

Query: 411 GQIIEVLIEKHGKE-KGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
             + +VL+E+      G + GR      V        IG ++ V + + K        V
Sbjct: 61  HTVQQVLVEEENDHTPGYMTGRLSNNTVVHFPGDPSMIGTLMDVYLEESKGFYYMARPV 119


>gi|108759358|ref|YP_634573.1| B12 binding /radical SAM domain-containing protein [Myxococcus
           xanthus DK 1622]
 gi|2811129|gb|AAB97826.1| unknown [Myxococcus xanthus DK 1622]
 gi|108463238|gb|ABF88423.1| B12 binding/radical SAM domain protein [Myxococcus xanthus DK 1622]
          Length = 427

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 72/311 (23%), Positives = 117/311 (37%), Gaps = 23/311 (7%)

Query: 103 VVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFER 162
           V+       A  E +       ++V   +  Y L  LL R   G+   +T      K  +
Sbjct: 92  VLCIAGGVHATAETLQTLQAGFDLVAVGEGEYSLRALLGRVLRGEVPRETHGVAYLKDGK 151

Query: 163 LSIV----------DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG-IEISRSLSQVV 211
           L                +  + G    + I  GC   C FC  P+        RS++ V 
Sbjct: 152 LVQHGRGEGVQLDDFPPFAARNGQYGAIEITRGCIYACRFCQTPFMSKARFRHRSVANVA 211

Query: 212 DEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPR 271
             AR+L  +G  +I  +     ++              LL ++ E        Y  + P 
Sbjct: 212 HWARELRRSGRRDIRFITPTSMSYGTADESVNLDAVEALLAAVKEAMAPDGRVYYGTFPS 271

Query: 272 DMSDCLIKAHGDLDVLMPYLH-----LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
           ++    +     L++L  Y+H     +  QSGS+RIL+S  R H      +      +V 
Sbjct: 272 EVRPEHVTPEA-LELLKRYVHNDNLIIGGQSGSERILQSTRRGHDVETVVRATRI--AVE 328

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKI-GY-AQAFSFKYSPRLGTPGSNMLE-QVD 383
                + DFI+G PGE  +D  AT+ L++K+ G  A+     + P  GTP  +     VD
Sbjct: 329 CGFVPNVDFILGLPGEEPEDVDATVALMEKLAGLGARVHGHTFMPLPGTPFRDAPPGSVD 388

Query: 384 ENVKAERLLCL 394
           E     +L  L
Sbjct: 389 EAT-QRKLDRL 398


>gi|171185657|ref|YP_001794576.1| radical SAM domain-containing protein [Thermoproteus neutrophilus
           V24Sta]
 gi|170934869|gb|ACB40130.1| Radical SAM domain protein [Thermoproteus neutrophilus V24Sta]
          Length = 412

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 74/358 (20%), Positives = 128/358 (35%), Gaps = 31/358 (8%)

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG--KR 148
                +      VV  G  A  +   +L+    V  VV       LP ++ER   G  + 
Sbjct: 63  WREIAEVASRYPVVAGGPHAVGDPLTLLKL--GVKYVVVGDGEAALPAIVEREAEGGEEP 120

Query: 149 VVDTDYSVEDKFE-----RLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             +T  +V+ +        + +V   Y+R   V   + I   C   C FC   + +G   
Sbjct: 121 PPNTITAVDGRPRAGRRVYVELVHRTYSRSLEVYPPIEIMRSCVYRCAFCQT-WAQGRVR 179

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG--KGLDGEKCTFSDLLYSLSEIKGLV 261
            R L  VV+ A+  +  G   I  +   V    G   G        + LL ++ E+ G+ 
Sbjct: 180 FRPLENVVELAKAYVAAGHRAIRFIAP-VGFLYGSPDGRTPSPDALAALLKAVREVGGVP 238

Query: 262 RLRYTTSHPRD--MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
            L    S  R   ++  ++KA     V    +   +Q+ SD++LK   R H      + +
Sbjct: 239 HLGTFPSETRPETVTRDVLKAVKPY-VANRRISFGLQTASDKLLKLTKRDHDVAAVEEAV 297

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY--AQAFSFKYSPRLGTPGSN 377
               +V        D I G PGE +DD   T+  ++K+    A      Y P  GTP   
Sbjct: 298 KT--AVSMGFKPVVDVIGGLPGEEEDDVVKTVREMEKLVAMGANIRMHYYIPLPGTPLWG 355

Query: 378 MLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS 432
                   +  +   R     +    +Q+  +          ++E + +    L  R+
Sbjct: 356 RRPAPPHPLYEQFIKRHRRKVEGYWREQIELSRR--------IVETYRELDVYLRART 405


>gi|218506756|ref|ZP_03504634.1| hypothetical protein RetlB5_03679 [Rhizobium etli Brasil 5]
          Length = 129

 Score =  114 bits (286), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 36/129 (27%), Positives = 57/129 (44%), Gaps = 9/129 (6%)

Query: 335 FIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCL 394
            I GFP ET++ F   + L ++ G A    F YSPR GTP + M  Q+D ++  +R   L
Sbjct: 1   MIAGFPTETEEMFDNAVRLAEEAGIAHLHVFPYSPRPGTPAARMP-QLDRSLVKDRAARL 59

Query: 395 QKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVR 454
           +        S  D  VG    +L+E +G      +  +     V   + +   G+++ V 
Sbjct: 60  RATGHRLHQSHLDGMVGTRQWLLVENNG------LAHTENFTLV--AAADLRPGELVPVT 111

Query: 455 ITDVKISTL 463
           IT      L
Sbjct: 112 ITGHNGKHL 120


>gi|207109992|ref|ZP_03244154.1| putative ATP-binding protein [Helicobacter pylori HPKX_438_CA4C1]
          Length = 114

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 64/119 (53%), Gaps = 6/119 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + ++++ GC MN  DS  +        Y+  +    ADLI++NTC +REK   K++S +G
Sbjct: 2   KVYIETMGCAMNSRDSEHLLSELSKLDYKETSDPKTADLILINTCSVREKPERKLFSEIG 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           +   +K        +  + V GC A   G +IL+++P V+ V+G +   ++ +++ + +
Sbjct: 62  QFAKIKK------PNAKIGVCGCTASHMGADILKKAPSVSFVLGARNVSKISQVIHKEK 114


>gi|157363409|ref|YP_001470176.1| radical SAM domain-containing protein [Thermotoga lettingae TMO]
 gi|157314013|gb|ABV33112.1| Radical SAM domain protein [Thermotoga lettingae TMO]
          Length = 383

 Score =  114 bits (285), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 63/296 (21%), Positives = 113/296 (38%), Gaps = 29/296 (9%)

Query: 117 ILRRSPIVNVVVGPQTYYRLPELL----ERARFGKRVVDTDYSVEDKFERLSIVDGGYNR 172
           IL++     +  GP    +  +++    +    G    +    +  K ER ++ DG   R
Sbjct: 67  ILKKKGYALIAGGPHATAKPEDVIRMGFDHVFKGDGEENILLFL--KGERSTVFDGLVKR 124

Query: 173 KR-----------GVTAFLTIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDN 220
                         +   + I  GC   C +C V    G +   RS+  +V   +  I+ 
Sbjct: 125 INIDEYPPFCSDLDLFMPIEITRGCPFGCAYCEVSLIGGKKPRHRSVESIVHHCKSGINK 184

Query: 221 GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLI-- 278
                  +  N   +   G+        +LLY+L ++   ++  Y  S P D+    +  
Sbjct: 185 SRYIARFITPNAFGYGSDGMKVNVEAIDNLLYNLKKVG--MKEIYFGSFPSDVRPEFVTD 242

Query: 279 KAHGDLDVLM--PYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFI 336
           +    +   +   Y+ L  QSGSDR+L+ + R HT     +  + +  +        D I
Sbjct: 243 EVLKTIKKYVNNRYIILGAQSGSDRVLRLIKRFHTVEHVVRSAEIV--LNNGFVPRVDII 300

Query: 337 VGFPGETDDDFRATMDLVDKIGYA--QAFSFKYSPRLGTPGSNMLEQV-DENVKAE 389
            GFP E +DD   T DL+ K+     +  +  + P  GT   +    V  E V+ E
Sbjct: 301 FGFPFENEDDLAKTFDLIKKLVKMGCKIHAHTFMPLPGTELESSGHAVLPEWVRRE 356


>gi|296132310|ref|YP_003639557.1| Radical SAM domain protein [Thermincola sp. JR]
 gi|296030888|gb|ADG81656.1| Radical SAM domain protein [Thermincola potens JR]
          Length = 443

 Score =  114 bits (285), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 58/271 (21%), Positives = 107/271 (39%), Gaps = 31/271 (11%)

Query: 168 GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVCEIT 226
             +  K  + + + I  GC   C+FC   +  G +   RS+  ++   R L + G+ +I 
Sbjct: 182 PPFAIKHRLFSPIEITRGCPYLCSFCQTGHIFGPQPRHRSIENILGYVRLLTERGLTDIK 241

Query: 227 LLGQNV---NAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDC------- 276
            +  N     +  GK ++  K     LL  +  I G     +  S P ++          
Sbjct: 242 FITPNAFSYGSPDGKTINVNK--LEALLRGVRAIIGNRGRIFMGSFPSEVRPEHVTEETV 299

Query: 277 -LIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDF 335
            L++ + + D L+    +  QSGS RIL   +R H   +  + +D   +VR  +  + DF
Sbjct: 300 NLVRKYANNDNLI----IGAQSGSQRILDLCHRGHKVEDIFRAVDI--TVRAGLVANVDF 353

Query: 336 IVGFPGETDDDFRATMDLVDKI--GYAQAFSFKYSPRLGTPGSNML-EQVDENVKAERLL 392
           I G PGE   D + T+ ++ ++    A+  +  + P   T  +     ++ +      L 
Sbjct: 354 IFGLPGEEPADVKQTIQVIKELVERGARVHAHTFMPLPQTAFAKKPAGRISKE-----LE 408

Query: 393 CLQKKLREQQVSFNDACVGQIIEVLIEKHGK 423
            L   L             +  E L EK  +
Sbjct: 409 NLINILNA-SHKVYGHW--REQEKLAEKIAR 436


>gi|303243818|ref|ZP_07330158.1| Radical SAM domain protein [Methanothermococcus okinawensis IH1]
 gi|302485754|gb|EFL48678.1| Radical SAM domain protein [Methanothermococcus okinawensis IH1]
          Length = 383

 Score =  113 bits (284), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 62/352 (17%), Positives = 124/352 (35%), Gaps = 35/352 (9%)

Query: 63  DLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSP 122
           D+++ +   +     E   + + +++ L NS        +++  G        + +    
Sbjct: 43  DILIYSFMTLNWGTVEHEITEINKLKQLINSNK-----PILIAGGPHPTGAPIDTINM-- 95

Query: 123 IVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYN-----RKRGVT 177
             + V+  +    LP+L+ + R G+     + +  D      I+    +      K    
Sbjct: 96  GFDYVIVGEGEITLPKLINKLREGEINAPINKNELDNINEKIIIGECVDNLDNFEKIEPL 155

Query: 178 AFLTIQEGCDKFCTFCVVPYTRG-IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR 236
             + I  GC   C FC  P   G     RS+  ++       D       ++  N     
Sbjct: 156 TPVEITRGCPYKCRFCQTPQIFGSKVRHRSIDSILRLVNPNTD-----TRVISPNA-LCY 209

Query: 237 GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT----SHPRDMSDCLIKAHGDLDVLMPYLH 292
           G     +              +G  +L + T      P  ++   ++          +LH
Sbjct: 210 GSKTGTKPNIEKLEKLLKKLSEGKGKLFFGTFPSEVRPEFITKETVELIAKY-CDNKFLH 268

Query: 293 LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352
              QSG+D +LK + R HT  +    +D    +  ++    DFI GFP E +   + +M+
Sbjct: 269 FGAQSGNDEMLKYIRRGHTVNDVLNAVDLC--IDYNLIPKVDFIFGFPNENEFHRKDSME 326

Query: 353 L----VDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLRE 400
           L    + K G  +A +  + P  GT       Q    +  + L  L +  ++
Sbjct: 327 LLYYIIKKNG--RAHAHYFMPLPGT---YFENQKPTILDRKTLKALGQLSQK 373


>gi|124026950|ref|YP_001012270.1| radical SAM family Fe-S oxidoreductase [Hyperthermus butylicus DSM
           5456]
 gi|123977644|gb|ABM79925.1| Fe-S oxidoreductase, Radical SAM superfamily [Hyperthermus
           butylicus DSM 5456]
          Length = 528

 Score =  113 bits (284), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 78/355 (21%), Positives = 132/355 (37%), Gaps = 53/355 (14%)

Query: 139 LLERARFGKRVVDTDYSVEDKFERLSIVDGG----YNRKRGVTAFLTIQEGCDKFCTFCV 194
           + ER R   RV+            + +V G     + R  G+     + E     C +C 
Sbjct: 167 VWERYRPSTRVIRGYPLYWAARVYVEVVRGCSNYSFPRLDGILPPELLPEKPIPGCAYCS 226

Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSD----- 249
           V    G   SRS+  V +E ++LID GV  I L G +     G+    E     D     
Sbjct: 227 VIPLYGYARSRSIDHVYEEVKELIDQGVHRIVLSGPDF-LDYGRDWLVEPSPLLDPRNPP 285

Query: 250 --------LLYSLSEIK----GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQS 297
                   LL  ++ I     G V +      P  ++D ++   G      P +H+  ++
Sbjct: 286 PNTKAIAELLRRITAIPEVSSGEVSVMVENIKPNLVNDEVVLVLGRYLRGTP-VHIGAET 344

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
           G +++L+++ R  T YE  + +  +R  R  +      +   PGET    R T++ ++K+
Sbjct: 345 GDNKLLEALGRSATVYEVVKAVRLLR--RHGLRPYVYIMYCLPGETSRTIRQTVEYMEKL 402

Query: 358 ---GYAQAFSFKYSPRLGTPGSNMLE-------QVDENVKAERLLCLQKKLREQQVSFND 407
              G  +   +K++P   +    +              V   RL     +  E       
Sbjct: 403 YNAGAEKITVYKFTPLPLSYLHKLAGTNYDTKCPNPHPV---RL-----RAEEINKRAKR 454

Query: 408 ACVGQIIEVLIEKHGKEKGKLVGRSPWL----QSVVLNSKNHNIGDIIKVRITDV 458
             +G  I V+I       G   GR P         V+     +IGD++  RI DV
Sbjct: 455 RLIGLRIRVIIV------GYYRGRRPLGYPLKHGPVVLLDRGSIGDLVDARIVDV 503


>gi|310824425|ref|YP_003956783.1| hypothetical protein STAUR_7200 [Stigmatella aurantiaca DW4/3-1]
 gi|309397497|gb|ADO74956.1| conserved uncharacterized protein [Stigmatella aurantiaca DW4/3-1]
          Length = 431

 Score =  113 bits (284), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 55/223 (24%), Positives = 92/223 (41%), Gaps = 11/223 (4%)

Query: 180 LTIQEGCDKFCTFCVVPYTRG-IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK 238
           + I  GC   C FC  P+        RS+  V + AR L  +G  +I  +     ++   
Sbjct: 180 IEITRGCIYACRFCQTPFLNKARFRHRSVRNVAEWARVLRASGRRDIRFITPTSLSYGSG 239

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLI--KAHGDLDVLM--PYLHLP 294
                      LL +L E        +  + P ++    +  +A   L   +    L + 
Sbjct: 240 DEAVNLEAVEALLAALREAMAPEGRIFFGTFPSEVRPEHVTPEALALLKRYVANDNLIIG 299

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
            QSGS+RIL+S +R H      + +    ++      + DFI+G PGE  +D  AT+ ++
Sbjct: 300 GQSGSERILRSSHRGHDTEAVVRSVRV--ALEGGFLPNVDFILGLPGEGPEDIEATVRMM 357

Query: 355 DKI-GY-AQAFSFKYSPRLGTPGSN-MLEQVDENVKAERLLCL 394
           + + G  A+     + P  GTP  +    +VD    A RL  L
Sbjct: 358 ETLAGLGARVHGHTFMPLPGTPFRDAAPGRVDGET-ARRLDEL 399


>gi|327310433|ref|YP_004337330.1| Radical SAM domain-containing protein [Thermoproteus uzoniensis
           768-20]
 gi|326946912|gb|AEA12018.1| Radical SAM domain protein [Thermoproteus uzoniensis 768-20]
          Length = 413

 Score =  113 bits (283), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 67/308 (21%), Positives = 113/308 (36%), Gaps = 21/308 (6%)

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
                           VVV G  A  +   +LR    V  VV       LP ++ R   G
Sbjct: 57  FVEYWREIASVASKAPVVVGGPHAIGDPATLLRL--GVKYVVIGDGEAALPAIVRRELEG 114

Query: 147 --KRVVDTDYSVEDKFERLSIVDGGYNRKRGVT------AFLTIQEGCDKFCTFCVVPYT 198
             ++  +T +  + + +         NR R  +        + I  GC   C+FC+    
Sbjct: 115 SDEKPPNTLFLSDGRIKSGPREFVDINRYRTYSTVLDAYPPIEIMRGCVYRCSFCLTWRL 174

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG--KGLDGEKCTFSDLLYSLSE 256
                 R +  V D  R  +  G+ +I  +   V    G   G   +  +  +LL ++  
Sbjct: 175 -SPVRYRGVESVADMVRAYVKRGIKDIRFVAP-VGFLYGSRDGRTPDVGSLVELLEAVRR 232

Query: 257 IKGLVRLRYTTSHPRD--MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
             G   L    S  R   ++D ++KA   L +    +   +Q+ S+R+LK   R H    
Sbjct: 233 AGGRPYLGTFPSETRPETVTDEVLKALRGL-LANRRISFGLQTASERLLKLSKREHDVEV 291

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK-IGY-AQAFSFKYSPRLG 372
                +  R  R       D I G PGE ++D RAT+  ++K +   ++     + P  G
Sbjct: 292 VLNAAETAR--RHGFTPIVDVIAGLPGEGEEDVRATVAAMEKLVKLGSKIRLHYFIPLPG 349

Query: 373 TPGSNMLE 380
           TP   +  
Sbjct: 350 TPLWGLRP 357


>gi|145591651|ref|YP_001153653.1| radical SAM domain-containing protein [Pyrobaculum arsenaticum DSM
           13514]
 gi|145283419|gb|ABP51001.1| Radical SAM domain protein [Pyrobaculum arsenaticum DSM 13514]
          Length = 410

 Score =  113 bits (283), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 68/326 (20%), Positives = 115/326 (35%), Gaps = 28/326 (8%)

Query: 104 VVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK------RVVDTDYSVE 157
           VV G  A  +   +L+    V  VV       LP +++R   G        VV+      
Sbjct: 76  VVGGPHAVGDPVTLLKL--GVKYVVVGDGEVALPAIIQREEEGGGTPPNTMVVENGKIRA 133

Query: 158 DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKL 217
            +   + ++   Y+   G+   + I   C   C FC   +  G    R L  + +  +  
Sbjct: 134 GRRVYVELMYKTYSESLGIYPPIEITRSCAYRCAFCQT-WGHGPVRHRPLHNIAEIVKVY 192

Query: 218 IDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD----- 272
           +  G+ EI  +   V    G   DG+      L   L  ++ L    Y  S P +     
Sbjct: 193 VKRGISEIRFVAP-VGFLYGST-DGKTPNIDALTSLLRTVRELGGAPYLGSFPSETRPET 250

Query: 273 MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAIS 332
           ++  ++KA     V    + + +Q+ S+++LK++ R H      + +   R         
Sbjct: 251 VTPDVLKAVRPY-VANRRISIGLQTASEKLLKAVKRGHDVAVVEEAVKNAR--VFGFKPV 307

Query: 333 SDFIVGFPGETDDDFRATMDLVDKIGY--AQAFSFKYSPRLGTPGSNMLEQVDEN----- 385
            D I G PGE  DD  AT+  ++K+    A      Y P  GTP      Q         
Sbjct: 308 VDVIAGLPGEDGDDVEATVREMEKLVKMGAYIRMHYYIPLPGTPLWGRRPQPPHRLYFDF 367

Query: 386 VK--AERLLCLQKKLREQQVSFNDAC 409
           VK    R+    ++            
Sbjct: 368 VKKYKRRVEGYFEEQIRLSQKIYQTY 393


>gi|318076881|ref|ZP_07984213.1| bi-functional transferase/deacetylase [Streptomyces sp. SA3_actF]
          Length = 877

 Score =  113 bits (282), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 33/143 (23%), Positives = 60/143 (41%), Gaps = 6/143 (4%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           +   + + GC  N  DS  +     + G++ V     AD+ V+NTC   E A +     L
Sbjct: 5   RTVALVTLGCARNEVDSEELAGRLEADGWDLVEDASHADVAVVNTCGFVEAAKKDSVDAL 64

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
               +LK      G    VV  GC+A+  G+++    P  + V+G   Y  + + L+   
Sbjct: 65  LEANDLKG----HGRTQAVVAVGCMAERYGKDLAEALPEADGVLGFDDYADISDRLQTIL 120

Query: 145 FGKRVVDTDYSVEDKFERLSIVD 167
            G   +   ++  D+ + L +  
Sbjct: 121 SGG--IHASHTPRDRRKLLPLSP 141


>gi|119873373|ref|YP_931380.1| radical SAM domain-containing protein [Pyrobaculum islandicum DSM
           4184]
 gi|119674781|gb|ABL89037.1| Radical SAM domain protein [Pyrobaculum islandicum DSM 4184]
          Length = 398

 Score =  113 bits (282), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 74/362 (20%), Positives = 127/362 (35%), Gaps = 31/362 (8%)

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER-ARF 145
                   ++      VVV G  A  +   +L+    V  VV       LP ++ER    
Sbjct: 45  FVEHWREILEVASRYPVVVGGPHAVGDPLTLLKL--GVKYVVVGDGEVALPAIIEREVNA 102

Query: 146 GKRVVDTDYSVEDKFERL------SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           G+ +        D   R        ++   Y++  G+   + I   C   C FC   + +
Sbjct: 103 GRDIPPNTVMFIDGRPRAGRRLYAELIYKTYSKSLGIYPPIEIMRSCAYRCAFCQT-WAQ 161

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG--KGLDGEKCTFSDLLYSLSEI 257
           G    R L  VV+ A+  +  G  EI  +   V    G   G        + LL S+ E 
Sbjct: 162 GPLRFRPLENVVELAKAYVSTGHREIRFIAP-VGFLYGSSDGRTPNPDALASLLKSIRET 220

Query: 258 KGLVRLRYTTSHPRD--MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
            G+  L    S  R   ++  ++KA     V    +   +Q+ S+++LK   R H     
Sbjct: 221 GGVPYLGTFPSETRPETVTRDILKAIKPY-VANRRISFGLQTASEKLLKLTKRGHDIATV 279

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI--GYAQAFSFKYSPRLGT 373
            + +    +V        D I G PGE +DD   T+  ++K+    A      Y P  GT
Sbjct: 280 EEAVKT--AVSMGFKPVVDVIGGLPGEDEDDVVETVREMEKLIAMGANIRMHYYIPLPGT 337

Query: 374 PGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG 430
           P           +  +   R     +    +Q+  +          ++E + +    L  
Sbjct: 338 PLWGRRPAPPHPLYEQFIKRHRRKVEGYWREQIELSKR--------IVETYRELDAYLRV 389

Query: 431 RS 432
           R+
Sbjct: 390 RT 391


>gi|115374421|ref|ZP_01461704.1| Fe-S oxidoreductase family protein [Stigmatella aurantiaca DW4/3-1]
 gi|115368623|gb|EAU67575.1| Fe-S oxidoreductase family protein [Stigmatella aurantiaca DW4/3-1]
          Length = 404

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 55/223 (24%), Positives = 92/223 (41%), Gaps = 11/223 (4%)

Query: 180 LTIQEGCDKFCTFCVVPYTRG-IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK 238
           + I  GC   C FC  P+        RS+  V + AR L  +G  +I  +     ++   
Sbjct: 153 IEITRGCIYACRFCQTPFLNKARFRHRSVRNVAEWARVLRASGRRDIRFITPTSLSYGSG 212

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLI--KAHGDLDVLM--PYLHLP 294
                      LL +L E        +  + P ++    +  +A   L   +    L + 
Sbjct: 213 DEAVNLEAVEALLAALREAMAPEGRIFFGTFPSEVRPEHVTPEALALLKRYVANDNLIIG 272

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
            QSGS+RIL+S +R H      + +    ++      + DFI+G PGE  +D  AT+ ++
Sbjct: 273 GQSGSERILRSSHRGHDTEAVVRSVRV--ALEGGFLPNVDFILGLPGEGPEDIEATVRMM 330

Query: 355 DKI-GY-AQAFSFKYSPRLGTPGSN-MLEQVDENVKAERLLCL 394
           + + G  A+     + P  GTP  +    +VD    A RL  L
Sbjct: 331 ETLAGLGARVHGHTFMPLPGTPFRDAAPGRVDGET-ARRLDEL 372


>gi|15642956|ref|NP_227997.1| hypothetical protein TM0182 [Thermotoga maritima MSB8]
 gi|4980678|gb|AAD35275.1|AE001703_4 conserved hypothetical protein [Thermotoga maritima MSB8]
          Length = 397

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 66/330 (20%), Positives = 114/330 (34%), Gaps = 34/330 (10%)

Query: 54  ERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAE 113
           E      +  ++  +          +    L                  ++  G    A+
Sbjct: 38  EIKKFPPEKTIVAYSFMSFDLDTVREEVKTLKE------------RGYTLIAGGPHVTAD 85

Query: 114 GEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRK 173
            E  L R    +V  G         +L+     ++ +    S              +   
Sbjct: 86  PEGCL-RMGFDHVFTG----DGEENILKFLMGERKKIFDGISKRVNLNHYPP----FLPS 136

Query: 174 RGVTAFLTIQEGCDKFCTFCVVPYTRG-IEISRSLSQVVDEARKLIDNGVCEITLLGQN- 231
           +G+   + I  GC   C +C  P   G     R +  VV  A+  + +G      +  N 
Sbjct: 137 KGIYMPIEITRGCPFSCAYCQTPIIAGRRVRHRDVDVVVHYAKLGVKHGRKLARFIAPNS 196

Query: 232 VNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT----SHPRDMSDCLIKAHGDLDVL 287
                  G+        +LLY L ++ G+  + + T      P  ++D ++K        
Sbjct: 197 FGYGSKNGVTPNVEKIEELLYGLKKV-GIEEIYFGTFPSEVRPESVTDEVLKVVKKYVN- 254

Query: 288 MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDF 347
              + +  QSGSDRILK + R HT  +  + I++I           DFI GFP ET++D 
Sbjct: 255 NRSIVIGAQSGSDRILKIIKRGHTVEQVEEAIEKI--SLHGFIPHVDFIFGFPFETEEDV 312

Query: 348 RATMDLVDKI--GY-AQAFSFKYSPRLGTP 374
             T   + KI   Y A+  +  + P  GT 
Sbjct: 313 EKTFSFIVKIVERYGAKIHAHTFMPLPGTE 342


>gi|170288563|ref|YP_001738801.1| radical SAM domain-containing protein [Thermotoga sp. RQ2]
 gi|170176066|gb|ACB09118.1| Radical SAM domain protein [Thermotoga sp. RQ2]
          Length = 397

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 67/330 (20%), Positives = 116/330 (35%), Gaps = 34/330 (10%)

Query: 54  ERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAE 113
           E      +  ++  +          +       ++ LK           ++  G    A+
Sbjct: 38  EIKKFPPEKTIVAYSFMSFDLDTVRE------EVKALKEQ------GYTLIAGGPHVTAD 85

Query: 114 GEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRK 173
            E  L R    +V  G         +L      ++ +    S              +   
Sbjct: 86  PEGCL-RMGFDHVFTG----DGEENILRFLMGERKKIFDGISKRVNLNHYPP----FLPS 136

Query: 174 RGVTAFLTIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVCEITLLGQN- 231
           +G+   + I  GC   C +C  P   G +   R +  VV  A+  + +G      +  N 
Sbjct: 137 KGIYMPIEITRGCPFSCAYCQTPIIAGRQVRHRDVDVVVHYAKLGVKHGRKLARFIAPNS 196

Query: 232 VNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT----SHPRDMSDCLIKAHGDLDVL 287
                  G+        +LLY L  + G+  + + T      P  ++D ++K        
Sbjct: 197 FGYGSKNGVTPNVEKIEELLYGLKRV-GIEEIYFGTFPSEVRPESVTDEVLKVVKKYVN- 254

Query: 288 MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDF 347
              + +  QSGSDRILK + R HT  +  + I++I           DFI GFP ET++D 
Sbjct: 255 NRSIVIGAQSGSDRILKIIKRGHTVEQVEEAIEKI--SLHGFIPHVDFIFGFPFETEEDV 312

Query: 348 RATMDLVDKI--GY-AQAFSFKYSPRLGTP 374
             T   + KI   Y A+  +  + P  GT 
Sbjct: 313 EKTFSFIVKIVERYGAKIHAHTFMPLPGTE 342


>gi|148269877|ref|YP_001244337.1| radical SAM domain-containing protein [Thermotoga petrophila RKU-1]
 gi|61657399|emb|CAI44315.1| hypothetical protein [Thermotoga petrophila]
 gi|147735421|gb|ABQ46761.1| Radical SAM domain protein [Thermotoga petrophila RKU-1]
          Length = 397

 Score =  112 bits (280), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 55/216 (25%), Positives = 89/216 (41%), Gaps = 13/216 (6%)

Query: 168 GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVCEIT 226
             +   +G+   + I  GC   C +C  P   G +   R +  VV  A+  + +G     
Sbjct: 131 SPFLPSKGIYMPIEITRGCPFSCAYCQTPIIAGRQVRHRDVDVVVHYAKLGVKHGRKLAR 190

Query: 227 LLGQN-VNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT----SHPRDMSDCLIKAH 281
            +  N        G+        +LLY L  + G+  + + T      P  ++D ++K  
Sbjct: 191 FIAPNSFGYGSKNGVTPNVEKIEELLYGLKRV-GIEEIYFGTFPSEVRPESVTDEVLKVV 249

Query: 282 GDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPG 341
                    + +  QSGSDRILK + R HT  +  + I++I           DFI GFP 
Sbjct: 250 KKYVN-NRSIVIGAQSGSDRILKIIKRGHTVEQVEEAIEKI--SLHGFIPHVDFIFGFPF 306

Query: 342 ETDDDFRATMDLVDKI--GY-AQAFSFKYSPRLGTP 374
           ET++D   T   + KI   Y A+  +  + P  GT 
Sbjct: 307 ETEEDVEKTFSFIVKIVERYGAKIHAHTFMPLPGTE 342


>gi|18313337|ref|NP_560004.1| hypothetical protein PAE2426 [Pyrobaculum aerophilum str. IM2]
 gi|18160863|gb|AAL64186.1| conserved hypothetical protein [Pyrobaculum aerophilum str. IM2]
          Length = 411

 Score =  111 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 66/340 (19%), Positives = 120/340 (35%), Gaps = 23/340 (6%)

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR-- 144
              +    I   G   VV  G  A  +   +L+    V  VV       LP ++E+    
Sbjct: 59  FVEIWRELIAVAGRFPVVAGGPHAAGDPITLLKL--GVKYVVVGDGEVALPAIIEKEEGL 116

Query: 145 FGKRVVDTDYSVEDKFE-----RLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
             +   +     + K +        +V   Y+   G    + I   C   C FC   + +
Sbjct: 117 SDETPPNVLIMEDGKVKAGRRVYTELVYKTYSEALGAYPPIEIMRSCGYRCAFCQT-WAQ 175

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G    R L +V +  +  +  G  EI  +   V     +  DG+      L+  L  ++ 
Sbjct: 176 GPVRYRPLEKVEEMVKVYVKKGRREIRFIAP-VGFLY-QSKDGKTPNIDALISLLKTVRE 233

Query: 260 LVRLRYTTSHPRDMSDCLI--KAHGDLDVLM--PYLHLPVQSGSDRILKSMNRRHTAYEY 315
              L +  + P +     +       L  L+    L   +Q+ S+R+LK   R H     
Sbjct: 234 AGGLPFLGTFPSETRPETVTRDVLSALKNLLANKRLSFGLQTASERLLKLAKRGHDVATV 293

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY--AQAFSFKYSPRLGT 373
            + +   R+         D I G PGE ++D  AT+  ++++    A+     + P  GT
Sbjct: 294 EEAVVTARAF--GFTPVVDIIAGLPGEDEEDVVATVKTMERLAAMGARIRMHYFIPLPGT 351

Query: 374 PGSNMLEQVDENVKAERLLCLQKKLR---EQQVSFNDACV 410
           P           +  E     +KK+    E+Q+  +   +
Sbjct: 352 PLWGREPSPPHKLYTEFAKRYRKKVEGYWEEQIQLSRRII 391


>gi|310658010|ref|YP_003935731.1| radical sam domain-containing protein [Clostridium sticklandii DSM
           519]
 gi|308824788|emb|CBH20826.1| Radical SAM domain protein [Clostridium sticklandii]
          Length = 440

 Score =  111 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 74/346 (21%), Positives = 132/346 (38%), Gaps = 42/346 (12%)

Query: 53  YERVNSM---DDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCV 109
           YE +  +    DADLI ++T          V   +   +  +    K      V++ G +
Sbjct: 48  YEVIEDIPFDTDADLIGISTMG------HGVIRSIDIAKEFRKKGKK------VILGGYM 95

Query: 110 AQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGG 169
           A    +E  + S  V  VVG        E+L     G+     +  + + +    +    
Sbjct: 96  ASIMPQEAAKYSDSV--VVG-DAEMIWEEVLSDFCSGRLKEIYEKPLPNGYFSTPMPRFD 152

Query: 170 YNRKRGVTAFLTIQ--EGCDKFCTFCVVPYTR-GIEISRSLSQVVDEARKLIDNGVCEIT 226
             + + +  FL +Q   GC   C+FC V     G  I R L +VV + +++ D G  +I 
Sbjct: 153 LLKGKKIGDFLPVQAGRGCPNSCSFCSVSCLYKGRYIKRPLEEVVRDIKQIKDLGFKKIL 212

Query: 227 LLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV 286
           LL  N+ + R            D L+ L +    + + + +     +             
Sbjct: 213 LLDDNIFSDR------------DYLHKLLDTFIELNVTWMSQCEITIGHDNDLLQKLYKS 260

Query: 287 LMPYLHLPVQSGSDRILKSMNRRHTA-YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDD 345
               L   ++S +   L  M++      +Y  +I  IR     I +S++ +VG  G+T +
Sbjct: 261 GCQTLSFGLESITKESLDKMDKSWAKPSDYDYLIQNIRK--HGIDVSTEMVVGAEGDTLE 318

Query: 346 DFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERL 391
             R T D ++K   +    +  +P  GT      EQ+    KA RL
Sbjct: 319 SIRKTKDFIEKNKISVPRFYILTPFPGT---RFFEQI---EKAGRL 358


>gi|207092685|ref|ZP_03240472.1| putative ATP-binding protein [Helicobacter pylori HPKX_438_AG0C1]
          Length = 102

 Score =  111 bits (278), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 32/107 (29%), Positives = 57/107 (53%), Gaps = 6/107 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + ++++ GC MN  DS  +        Y+  +    ADLI++NTC +REK   K++S +G
Sbjct: 2   KVYIETMGCAMNSRDSEHLLSELSKLDYKETSDPKTADLILINTCSVREKPERKLFSEIG 61

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT 132
           +   +K        +  + V GC A   G +IL+++P V+ V+G + 
Sbjct: 62  QFAKIKK------PNAKIGVCGCTASHMGADILKKAPSVSFVLGARN 102


>gi|266621756|ref|ZP_06114691.1| tRNA modification enzyme, MiaB family [Clostridium hathewayi DSM
           13479]
 gi|288866553|gb|EFC98851.1| tRNA modification enzyme, MiaB family [Clostridium hathewayi DSM
           13479]
          Length = 112

 Score =  111 bits (278), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 58/118 (49%), Gaps = 8/118 (6%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++  + + GC++N Y++  M+ +    GYE V   + AD+ ++NTC +   A  K    L
Sbjct: 2   RKAALHNLGCKVNSYETEAMQQLLEEAGYEIVPFAEGADVYIINTCSVTNIADRKSRQML 61

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            R +       K     +VV AGC  Q+ G+ + +    V++V+G      L ++LE 
Sbjct: 62  HRAK-------KMNPQAVVVAAGCYVQSAGDAL-KMDEAVDLVIGNNKKTELVKILEE 111


>gi|74193201|dbj|BAE20608.1| unnamed protein product [Mus musculus]
          Length = 218

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 38/173 (21%), Positives = 74/173 (42%), Gaps = 15/173 (8%)

Query: 16  QIVDQCIVP--QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIR 73
           +      +P  Q+ +++++GC  N  D   M     + GY+   +  DADL +LN+C ++
Sbjct: 52  RPPSDSTIPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVK 111

Query: 74  EKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTY 133
             A +   + + + +              VV+AGCV QA+  +   +      ++G Q  
Sbjct: 112 NPAEDHFRNSIKKAQEENKK---------VVLAGCVPQAQPRQDYLKG---LSIIGVQQI 159

Query: 134 YRLPELLERARFGKRVVDTDYSVED-KFERLSIVDGGYNRKRGVTAFLTIQEG 185
            R+ E++E    G  V       ++ K    + +D    RK  +   ++I  G
Sbjct: 160 DRVVEVVEETIKGHSVRLLGQKKDNGKRLGGARLDLPKIRKNPLIEIISINTG 212


>gi|296109534|ref|YP_003616483.1| Radical SAM domain protein [Methanocaldococcus infernus ME]
 gi|295434348|gb|ADG13519.1| Radical SAM domain protein [Methanocaldococcus infernus ME]
          Length = 490

 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 58/290 (20%), Positives = 109/290 (37%), Gaps = 16/290 (5%)

Query: 187 DKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT 246
           +  C FC VP   G   SR    +V+E  +L+  GV  I L   +   +     +  +  
Sbjct: 205 NPGCGFCSVPSVFGYAKSRDEDTIVEEIEELLKEGVKRIVLSAPDFLDYGRDSYNPYEPV 264

Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY-----LHLPVQSGSDR 301
             + + SL      +  R+ +    +     +       ++  Y     +++  +SG   
Sbjct: 265 NYEAIESLLSRCKELSERFNSKILIENVKANLFDERVAKIIKEYLGSTTIYIGCESGDKE 324

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG--Y 359
               + R     +  + +   +    ++     FI G PGE +   R T+  + K+    
Sbjct: 325 HCNLLGRPSEPRDVLKAVKIAKKY--NLKAQVYFIYGLPGENERSSRNTIRFMHKLKPYI 382

Query: 360 AQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI- 418
            +   +K+ P   +   N    V      +  L +++  R   +      +G+ +EV+I 
Sbjct: 383 DKITVYKFRPLPMSAFQNFKPNV-----TKFSLKIKETARRINLEIKRKYLGKRLEVIIA 437

Query: 419 EKHGKEKGKLVGRS-PWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
           EKH  +K   VG        VV+      IG++ KVRI  V    L G +
Sbjct: 438 EKHFNKKEDAVGYLKDSGLLVVVKDGAKYIGEVKKVRIKKVYEKYLEGVI 487


>gi|281412242|ref|YP_003346321.1| Radical SAM domain protein [Thermotoga naphthophila RKU-10]
 gi|281373345|gb|ADA66907.1| Radical SAM domain protein [Thermotoga naphthophila RKU-10]
          Length = 397

 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 55/216 (25%), Positives = 88/216 (40%), Gaps = 13/216 (6%)

Query: 168 GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI-EISRSLSQVVDEARKLIDNGVCEIT 226
             +   +G+   + I  GC   C +C  P   G     R +  VV  A+  + +G     
Sbjct: 131 PPFLPSKGIYMPIEITRGCPFSCAYCQTPIIAGKRVRHRDVDVVVHYAKLGVKHGRRLAR 190

Query: 227 LLGQN-VNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT----SHPRDMSDCLIKAH 281
            +  N        G+        +LLY L  + G+  + + T      P  ++D ++K  
Sbjct: 191 FIAPNSFGYGSKNGVTPNVEKIEELLYELKRV-GIEEIYFGTFPSEVRPESVTDEVLKVV 249

Query: 282 GDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPG 341
                    + +  QSGSDRILK + R HT  +  + I++I           DFI GFP 
Sbjct: 250 KKYVN-NRSIVIGAQSGSDRILKIIKRGHTVKQVEEAIEKI--SLHGFIPHVDFIFGFPF 306

Query: 342 ETDDDFRATMDLVDKI--GY-AQAFSFKYSPRLGTP 374
           ET++D   T   + KI   Y A+  +  + P  GT 
Sbjct: 307 ETEEDVEKTFSFIVKIVERYGAKIHAHTFMPLPGTE 342


>gi|116749753|ref|YP_846440.1| radical SAM domain-containing protein [Syntrophobacter fumaroxidans
           MPOB]
 gi|116698817|gb|ABK18005.1| Radical SAM domain protein [Syntrophobacter fumaroxidans MPOB]
          Length = 434

 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 61/292 (20%), Positives = 116/292 (39%), Gaps = 25/292 (8%)

Query: 88  RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147
           R  + +       + VV+ G       EE L+     + VV  +  Y  PELLE  R G+
Sbjct: 73  RAYEIAAKFRKRGVAVVMGGFHPTLLPEECLQHC---DAVVEGEAEYAWPELLEDFRAGR 129

Query: 148 RVVDTDYSVEDKFERLSIVDGGY-NRKRGVTAFLTIQ--EGCDKFCTFCVVPYTRGI-EI 203
                        + L        +R++    +L +Q   GC   C+FC VP   G    
Sbjct: 130 MKSRYKADRFHDLKNLPTPRWDLLDRRKYFVPYLPLQTTRGCPFKCSFCEVPIFYGGTYR 189

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
            R + +V+++ +++      ++ ++  N+        +  K            I   VR 
Sbjct: 190 HRPIGEVIEDIKRIP---TGKVQVVDDNITGSHEYARELFKAM----------IPLGVRW 236

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
               +        L+     +   + ++++ ++S S + L S+N+R      +  ++ +R
Sbjct: 237 SCLWTINTSRDAELLDL--AVRAGVYHVNIGIESVSQKSLSSINKRQNR--VKDYVEMLR 292

Query: 324 SV-RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
            + R  I  S +F+ G   +T + F  TMD + ++    AF    +PR GTP
Sbjct: 293 ELERRGIFYSLNFLFGLDEDTREIFAETMDFLKQVRAPMAFFNTVTPREGTP 344


>gi|300728187|ref|ZP_07061557.1| tRNA-I(6)A37 modification enzyme MiaB [Prevotella bryantii B14]
 gi|299774549|gb|EFI71171.1| tRNA-I(6)A37 modification enzyme MiaB [Prevotella bryantii B14]
          Length = 101

 Score =  110 bits (274), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 33/99 (33%), Positives = 61/99 (61%), Gaps = 4/99 (4%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + ++ F+++YGCQMNV DS  +  +    GYE  ++ D+AD I LNTC +RE A  K+++
Sbjct: 1   MDKKLFIETYGCQMNVADSEVVASVMKMAGYETTDNEDEADAIFLNTCSVRENAENKIFN 60

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRS 121
            L  +    ++  K+G  +++ V GC+A+   E++++  
Sbjct: 61  RLETL----HAEQKKGRKVILGVLGCMAERVKEDLVQNH 95


>gi|197117287|ref|YP_002137714.1| cobalamin-binding radical SAM domain-containing iron-sulfur
           cluster-binding oxidoreductase [Geobacter bemidjiensis
           Bem]
 gi|197086647|gb|ACH37918.1| cobalamin-binding radical SAM domain iron-sulfur cluster-binding
           oxidoreductase with TPR domain [Geobacter bemidjiensis
           Bem]
          Length = 564

 Score =  109 bits (273), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 67/313 (21%), Positives = 109/313 (34%), Gaps = 38/313 (12%)

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR---- 144
            L     +     LV + G  A     E+L   P V++VV  +    + EL+E       
Sbjct: 79  RLAALAKELDPGCLVALGGPHATHCWRELLEGHPEVDLVVLGEGEATVCELVEAKALGTP 138

Query: 145 -----------FGKRVVDTDYSVEDKFERLSIV-----DGGYNRKRGVTAFLTIQEGCDK 188
                       GK  +    +     + L +      D      R    F+    GC  
Sbjct: 139 WDKVAGLAFRAAGKASLSAPRAPITDLDLLPLPGAAEGDSIGVDFRRQLEFVITSRGCPA 198

Query: 189 FCTFCVVPYTRGI-EISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCT 246
            C FC  P   G     RS   VV E R L +  G+   +       A RG+        
Sbjct: 199 SCLFCSSPLFWGRGVRFRSPESVVQEIRSLKERYGLIYFSFRDDTFTANRGR-------- 250

Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306
               +  L   + L  +    S    + + ++ A          +   V+SGS ++LK++
Sbjct: 251 -VLEICRLLRQERLHVMWNCQSRVNAVDEEMLIAMKQAG--CECIQFGVESGSPQMLKAL 307

Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
            +R                R  I +S   I G PGE ++D R T+ L++ I   +    +
Sbjct: 308 GKR--ILPPEVERAAAAVRRAGINLSVYLITGIPGEGEEDLRQTVRLIESI---RPHDGQ 362

Query: 367 YSPRLGTPGSNML 379
            SP +  PG+ +L
Sbjct: 363 VSPLVYYPGTELL 375


>gi|170290976|ref|YP_001737792.1| radical SAM domain-containing protein [Candidatus Korarchaeum
           cryptofilum OPF8]
 gi|170175056|gb|ACB08109.1| Radical SAM domain protein [Candidatus Korarchaeum cryptofilum
           OPF8]
          Length = 501

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 58/315 (18%), Positives = 116/315 (36%), Gaps = 41/315 (13%)

Query: 173 KRGVTAFLTIQEGC------------DKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN 220
           +  + A   I  GC               C +C +P   G   SRS   ++ E  +L   
Sbjct: 188 RPRLIASPDICRGCQSLCSEICPQNIPPGCGYCSIPSLYGPPKSRSEESILREIEELAIA 247

Query: 221 GVCEITLLGQNVNAWRGKGLDGEK--------CTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
           GV    L G +     G+ L                 +   LS++KGL           +
Sbjct: 248 GVRRFVLSGADFLE-YGRDLISTPLTNPRDPGPNLDAIDSLLSKVKGLAERYSFFFEIEN 306

Query: 273 MSDCLI--KAHGDLDVLMPY--LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
           +  CL+  +    L   +    +H+ V++G     + + R  +  +  + I  ++     
Sbjct: 307 VKPCLVNEEVAYTLSKYLKGTPIHIGVETGDPDHARLIGRPCSPEDSLRAIKILKKY--G 364

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKI---GYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
           +   + FI   PG+++   + T++++  +   G  +   +++ P  GT   +        
Sbjct: 365 LRPYAYFIHSLPGQSERVAKKTLEMMRAVYDAGAEKITIYRFKPLPGTAFQDF------E 418

Query: 386 VKAER-LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL-VGRSPWLQSVVLNSK 443
           VK +R    +     +      +  +G+I+EV++     + G+           VV  +K
Sbjct: 419 VKVDRNSRMISDLAIDLNRRRKEELLGKIMEVIV---APKTGRYCYAYPINGGPVVRLNK 475

Query: 444 NHNIGDIIKVRITDV 458
               G ++KVRI  V
Sbjct: 476 GLRAGSVVKVRIKRV 490


>gi|148262459|ref|YP_001229165.1| radical SAM domain-containing protein [Geobacter uraniireducens
           Rf4]
 gi|146395959|gb|ABQ24592.1| Radical SAM domain protein [Geobacter uraniireducens Rf4]
          Length = 433

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 62/277 (22%), Positives = 112/277 (40%), Gaps = 25/277 (9%)

Query: 103 VVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFER 162
           VV+ G  A  + EE L      + VV  +  Y  PELLE  R G+             + 
Sbjct: 88  VVMGGFHASLQPEECLEHC---DAVVEGEAEYIWPELLEDFRAGRMKRRYKADRFHDLKG 144

Query: 163 LSIVDGGYNRKRGVTAF---LTIQEGCDKFCTFCVVPYTRG-IEISRSLSQVVDEARKLI 218
           L         +R   A    +    GC   C+FC VP   G     R + +V+++ R++ 
Sbjct: 145 LPAPRWDLLDRRKYLAPFLPVMTTRGCPFQCSFCEVPVVYGTKYRHRPIGEVIEDMRRIP 204

Query: 219 DNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLI 278
                +I ++  N+         G +    +L  ++  I   VR     +        L+
Sbjct: 205 ---TRKIQIVDDNIA--------GSREYAKELFKAM--IPLKVRWSCLWTINTSRDTELL 251

Query: 279 KAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV-RPDIAISSDFIV 337
                +   + ++++ V+S S   L ++N+R      R+ +D +R + +  I  S +F+ 
Sbjct: 252 DL--AMRAGVAHVNIGVESISQSSLGTINKR--QNNVREYVDMLREMEKRRIFYSLNFMF 307

Query: 338 GFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
           G   +T + F  T+D + ++     F    +PR GTP
Sbjct: 308 GLDEDTPEIFIDTLDFLKQVKAPMVFFNTVTPREGTP 344


>gi|300679361|gb|ADK27478.1| 2-methylthioadenine synthetase [Leptospira interrogans serovar
           Hardjo]
          Length = 127

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 53/120 (44%), Gaps = 5/120 (4%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           + ++F++ + GC  N+ DS+ M      +G+   +  +++D   +NTC   + A E+   
Sbjct: 1   MDKKFYITTLGCPKNIADSMSMHHSLLEEGFTPASLPEESDFHFINTCTFIQSATEETIQ 60

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +     +K           +VV GC A+   + I    P V++  G   Y +  ++L  
Sbjct: 61  TILSAAQVKKQ-----NHQKLVVVGCFAERYPDNIHSEIPEVDLFFGTGKYSQAGKILRE 115


>gi|47220777|emb|CAF99984.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 401

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 47/186 (25%), Positives = 75/186 (40%), Gaps = 52/186 (27%)

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           G+    Y   H  +M+  L         +  +LH+PVQS SD +L  M R +   +++ +
Sbjct: 5   GMTNPPYILEHLEEMAKIL-----THPRVYAFLHVPVQSASDSVLMDMKREYCVSDFKTV 59

Query: 319 IDRIRS---------------------------VRPDIAISSDFIVGFPGETDDDFRATM 351
           +D ++                              P + I++D I GFPGETD DF+ T+
Sbjct: 60  VDFLKERPLWQHGEFTRENGTQEPGAGFPVFHARVPGVTIATDVICGFPGETDKDFQETL 119

Query: 352 DLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV-------------------KAERLL 392
           DLV    +   F  ++ PR GTP + M EQV  ++                   K +R  
Sbjct: 120 DLVKLYRFPSLFINQFYPRPGTPAAKM-EQVPAHIVVIGYRLHYPQGTSAAPVKKKQRTK 178

Query: 393 CLQKKL 398
            L +  
Sbjct: 179 ELSQLF 184



 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 27/59 (45%)

Query: 410 VGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           VG+  +VL+ +   +    V  + + + V++  +    G +I+V I +     + G  V
Sbjct: 319 VGERQQVLVTEESFDAQYYVAHNKFYEQVLVPKRAEFKGKMIEVDIYEAGKHFMKGRPV 377


>gi|116750548|ref|YP_847235.1| radical SAM domain-containing protein [Syntrophobacter fumaroxidans
           MPOB]
 gi|116699612|gb|ABK18800.1| Radical SAM domain protein [Syntrophobacter fumaroxidans MPOB]
          Length = 475

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 68/331 (20%), Positives = 111/331 (33%), Gaps = 42/331 (12%)

Query: 90  LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL---------- 139
           L     K   D+ +   G       EE LR SP ++ VV  +  + + E           
Sbjct: 87  LAEMIKKSHPDVRIAFVGPPVSVHPEESLRASPAIDFVVRKEFDHAVTEFAQGKPLPDIL 146

Query: 140 -LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAF-----------LTIQEGCD 187
            +     G  V   D  V    + L  V   Y R   +T +                GC 
Sbjct: 147 GVSYLENGHIVHTPDRPVFTDLDSLPSVVDVYKRDLDITRYNVPFLLHPFIAFYTGRGCP 206

Query: 188 KFCTFCVVPYTRGIEISRS--LSQVVDEARKLIDN--GVCEITLLGQNVNAWRGKGLDGE 243
             CT+C+ P T      R      V  + ++  +    + EI     +  +W       +
Sbjct: 207 ARCTYCLWPQTFSGHTYRPRAAESVASDVKRAFELFPNLKEI-FFDDDTFSW-------D 258

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
           K    DL   L  +       ++ +   +    ++KA  D       L +  +SG   IL
Sbjct: 259 KTRVLDLCAKLKPLG----FTWSCTCRVNADHEMLKAMRDAG--CRLLIVGFESGDSGIL 312

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           K++ +  T       +   RS+   +A+  DFI+G PGET +  + TM   +++      
Sbjct: 313 KNVKKGATPELAMSFMKTARSL--GLAVHGDFIIGLPGETRETIKTTMRFAEELDCETIQ 370

Query: 364 SFKYSPRLGTPGSNMLEQVDENVKAERLLCL 394
                P  GT     L       K E    L
Sbjct: 371 VSIAHPFPGTDFEVWLRDRGYLTKDEMFDEL 401


>gi|91202730|emb|CAJ72369.1| similar to protein involved in methylthiolation of isopentenylated
           A37 derivatives in tRNA [Candidatus Kuenenia
           stuttgartiensis]
          Length = 496

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 58/301 (19%), Positives = 108/301 (35%), Gaps = 33/301 (10%)

Query: 95  IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF--------- 145
            K      VV  G  A  + EE+L  S  V+ V+  +     PEL+              
Sbjct: 112 KKYDKKCHVVFGGPHATLKPEEVLTISGDVDFVISGEGEGAFPELVHLLEKKEGGFEKIA 171

Query: 146 -------GKRVVDTDYSVEDKFERLSIVD-----GGYNRKRGVTAFLTIQEGCDKFCTFC 193
                  G++         D  + L   D     G           +    GC   C++C
Sbjct: 172 GLSYYRDGRKASSGSGKFIDNLDTLPFPDRESLLGADTYTSEDMGLIMGSRGCPFNCSYC 231

Query: 194 VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS 253
                      RS+  +++E + + +         G +   ++       K   ++   +
Sbjct: 232 ATQIWTRKVRYRSIPNIIEEIKYVNER-------YGTHQFTFKDDSFTVSKKRVAEFCDA 284

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
           L ++ GL       +    +   L+K           + + V+SGS+RILK M++  +  
Sbjct: 285 LLKV-GLKVKWDCNTRADLVDLPLLKTMKKAG--CNSIKVGVESGSERILKIMDKGVSLE 341

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
           + ++     R     I  ++ F++G P ET +D + T+ L+ +I  + A    Y P  GT
Sbjct: 342 QVKESAKLFRKA--GIHWTAYFMMGVPTETKEDVKETVKLLYEIKPSFASVGVYEPFPGT 399

Query: 374 P 374
            
Sbjct: 400 K 400


>gi|126458934|ref|YP_001055212.1| radical SAM domain-containing protein [Pyrobaculum calidifontis JCM
           11548]
 gi|126248655|gb|ABO07746.1| Radical SAM domain protein [Pyrobaculum calidifontis JCM 11548]
          Length = 393

 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 68/338 (20%), Positives = 119/338 (35%), Gaps = 23/338 (6%)

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
              +     +      VV  G  A  +   +L+    V  VV       LP ++ER   G
Sbjct: 45  FVEIWQEVREVASKYPVVAGGPHAAGDPITLLKL--GVKYVVIGDGEVALPAIVEREAEG 102

Query: 147 -KRVVDTDYSVED------KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
            + V      + D      +     ++   Y+   G    + I   C   CTFC   +  
Sbjct: 103 LEEVPPNTLMLVDGRVRAGRRIYAELIHKTYSTSLGAYPPIEIMRSCAYRCTFCQT-WFH 161

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G    R +  V    +  +  G  EI  +   V    G   DG+      L+  L  ++ 
Sbjct: 162 GSVRYRPVENVAQMVKHYVAAGREEIRFIAP-VGFLYGST-DGKTPNVDALVGLLRAVRE 219

Query: 260 LVRLRYTTSHPRDMSDCLI--KAHGDLDVLM--PYLHLPVQSGSDRILKSMNRRHTAYEY 315
                Y  + P +     +     G +   +    L   +QSGS+R+L S  R H     
Sbjct: 220 AGGRPYLGTFPSETRPETVTRDVLGAIKPFVANRRLSFGLQSGSERLLASTKRDHDVAVV 279

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI--GYAQAFSFKYSPRLGT 373
            +      +V+       D I G PGE ++D  AT+  ++++    A      + P  GT
Sbjct: 280 EEATAT--AVKMGFKPVVDVIAGLPGEEEEDVVATVKAMERLVSMGAHIRLHYFMPLPGT 337

Query: 374 PGSNMLEQVDENVKAERLLCLQKKLR---EQQVSFNDA 408
           P      +    +  + L   +K++    E+Q+  + A
Sbjct: 338 PLWGREPKPPHPLYWDFLKRHRKRVEGYFEEQIRLSRA 375


>gi|313672559|ref|YP_004050670.1| radical sam domain protein [Calditerrivibrio nitroreducens DSM
           19672]
 gi|312939315|gb|ADR18507.1| Radical SAM domain protein [Calditerrivibrio nitroreducens DSM
           19672]
          Length = 387

 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 51/295 (17%), Positives = 109/295 (36%), Gaps = 15/295 (5%)

Query: 92  NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVD 151
             ++K+  ++ +   G    A  EE+ +    V    G      + E  E    GK++  
Sbjct: 66  AQKLKQKKNIKIACGGPHPSARSEEMTKYFDKVCNGEGEIVLKEIVEDFESGIDGKKIYK 125

Query: 152 TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR-GIEISRSLSQV 210
               V+            Y +K+ +   + I  GC   C +C  P    G    +S+ ++
Sbjct: 126 GTKKVDLNHFD------AYPKKKNLFGAIEIMRGCTFSCKYCQTPQLYKGKLRYKSIDRI 179

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270
           +D+    I +   ++  +  + +A               LL  L  +       +  S P
Sbjct: 180 LDDVSFGISHNKTDLRFIAPD-SASYFYDNGINILMIEKLLDKLHNLLYNKGRIFYGSFP 238

Query: 271 RDMSDCLI--KAHGDLDVLM--PYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
            +++   +  +    +        + + +QS S ++LK MNR     +  + I+     +
Sbjct: 239 SEINPYFVNEEFVKLIKHYCHNRRVVIGLQSASRKLLKKMNRPENIEKVEEAINLFLKYK 298

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDK-IGYAQAFSFKYSPRLGTPGSNMLE 380
               +  DFI G P ET +  + T++ ++K     +  S  + P  G+   ++  
Sbjct: 299 --FTVDVDFIFGLPFETSETLKETIEWIEKWHNKVRIHSHYFMPLPGSKWEDLTP 351


>gi|150401116|ref|YP_001324882.1| radical SAM domain-containing protein [Methanococcus aeolicus
           Nankai-3]
 gi|150013819|gb|ABR56270.1| Radical SAM domain protein [Methanococcus aeolicus Nankai-3]
          Length = 378

 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 58/283 (20%), Positives = 102/283 (36%), Gaps = 25/283 (8%)

Query: 125 NVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQE 184
           + V+  +    LP+++ +    K + +     E       I D     K      + I  
Sbjct: 97  DYVIVGEGEITLPKIISKLNQNKELNNKIIMGE------PINDLDEFDKINPMTPVEITR 150

Query: 185 GCDKFCTFCVVPYTRG-IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
           GC   C FC  P   G     RS+  ++       D     + L+  N     G     +
Sbjct: 151 GCPHKCGFCQTPQIFGNKVRHRSIDNILKSINPNSD-----VRLITPNA-FCYGSETGTK 204

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLI--KAHGDLDVLM--PYLHLPVQSGS 299
                  L      +G  +L + T  P ++    I       +       YLH   QSGS
Sbjct: 205 PNIEKLELLLKKLREGKGKLFFGT-FPSEVRPEFIQKDTIELVAKYCHNKYLHFGAQSGS 263

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI-- 357
           D +LK + R HT  +    +D  +    ++    DFI GFP E +   + +M+L++ I  
Sbjct: 264 DEMLKLIRRGHTVNDVLNGVDLCKDY--NLIPKVDFIFGFPNENEFHRKESMELLNYIIK 321

Query: 358 GYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLRE 400
              +  +  + P +GT   N        +  + L  L +  ++
Sbjct: 322 KGGKVHAHYFMPLVGT---NFEGSSPTPLDKKTLKTLGQLSQK 361


>gi|213026174|ref|ZP_03340621.1| isopentenyl-adenosine A37 tRNA methylthiolase [Salmonella enterica
           subsp. enterica serovar Typhi str. 404ty]
          Length = 74

 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 38/73 (52%), Positives = 52/73 (71%)

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
           II ++R+ RPDI ISSDFIVGFPGET DDF  TM L+  + +  ++SF +S R GTP ++
Sbjct: 2   IIRKLRAARPDIQISSDFIVGFPGETTDDFEKTMKLIADVNFDMSYSFIFSARPGTPAAD 61

Query: 378 MLEQVDENVKAER 390
           M++ V E  K +R
Sbjct: 62  MVDDVPEEEKKQR 74


>gi|124515867|gb|EAY57376.1| putative radical SAM family protein [Leptospirillum rubarum]
          Length = 479

 Score =  106 bits (266), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 62/359 (17%), Positives = 122/359 (33%), Gaps = 55/359 (15%)

Query: 52  GYERVNSMDDA---DLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGC 108
           G++   ++  A   D+++L T      + +         ++L          +LV   G 
Sbjct: 58  GWDVAKTLSLAKEFDIVILYTST---PSLQNDIQIAKGFKSL-------NPSILVGFVGP 107

Query: 109 VAQAEGEEILRRSPIVNVVVGPQTYYRLPEL-----------LERARFGKRVVDTDYSVE 157
                 E  L+  P+++ VV  +  + +PE+           +     G+     D  V 
Sbjct: 108 HPSVLPELTLKADPVIDFVVREEFDHAIPEIANGKPWDEVLGIHYRIDGEIRSTPDRPVL 167

Query: 158 DKFERLSIVDGGYNR---------KRGVTAFLTI--QEGCDKFCTFCVVP--YTRGIEIS 204
           +  + L      Y R               +++I    GC   CTFC+ P  ++  +  +
Sbjct: 168 ENLDNLPFASEVYRRDLNIMDYEIPWMKYPYVSIYTGRGCGSKCTFCLWPQTFSGNVYRT 227

Query: 205 RSLSQVVDEARKLIDN--GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           RS+  V+ E   +     G+ E+      +  +R            D    LSE      
Sbjct: 228 RSVENVIKEVAYIKKTFPGIKELFFDDDTLTEYR------------DRTRELSEALKPFN 275

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           L +  +   ++    +K   D       + +  +SG+ +IL ++ +     +  +     
Sbjct: 276 LSWGCNSKANVDFETLKMMKDSG--CRVMVVGYESGNQQILNNVKKGIRIEQATEFTRNA 333

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
             +   + I   FI G PGET      T+     +          SP  GT   N  ++
Sbjct: 334 HQL--GMKIHGTFIFGLPGETPQTIEETIQFACDMDIETLQVSLASPYPGTHFYNFAKE 390


>gi|315927399|gb|EFV06737.1| uncharacterized protein family UPF0004 family protein
           [Campylobacter jejuni subsp. jejuni DFVF1099]
          Length = 139

 Score =  106 bits (265), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 30/117 (25%), Positives = 58/117 (49%), Gaps = 8/117 (6%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + ++ S GC  N+ DS  M     +  YE  +    AD++++NTC   + A ++  + + 
Sbjct: 3   KLYLMSLGCNKNLVDSEIMLGHLSA--YELCDEPSKADVLIVNTCGFIDSAKKESINAIL 60

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +   +        D L+VV GC+ Q   EE+++  P V++  G   Y R+ E++ +
Sbjct: 61  DLHEQRKK------DSLLVVTGCLMQRYREELMKELPEVDLFTGVGDYERIDEMILK 111


>gi|293397288|ref|ZP_06641560.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Serratia odorifera DSM
          4582]
 gi|291420206|gb|EFE93463.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Serratia odorifera DSM
          4582]
          Length = 75

 Score =  106 bits (264), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 33/74 (44%), Positives = 52/74 (70%), Gaps = 1/74 (1%)

Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
          + ++  +K++GCQMN YDS +M D+  S  GY+  ++ ++AD+++LNTC IREKA EKV+
Sbjct: 1  MTKKLHIKTWGCQMNEYDSSKMADLLGSTHGYQWTDNAEEADVLLLNTCSIREKAQEKVF 60

Query: 82 SFLGRIRNLKNSRI 95
          + LGR + LK    
Sbjct: 61 AMLGRWKLLKEKTR 74


>gi|162452471|ref|YP_001614838.1| putative Fe-S oxidoreductase [Sorangium cellulosum 'So ce 56']
 gi|161163053|emb|CAN94358.1| putative Fe-S oxidoreductase [Sorangium cellulosum 'So ce 56']
          Length = 609

 Score =  106 bits (264), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 55/293 (18%), Positives = 105/293 (35%), Gaps = 23/293 (7%)

Query: 92  NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR--- 148
               +      +VV G  A     E+LR  P ++ V   ++ +   ELL+R   G+    
Sbjct: 103 RCIRRLHPGAHIVVGGPHATPLAAEMLRHHPEIDTVTLGESEHSFLELLDRLEAGRPALG 162

Query: 149 VVDTDYSVEDKFERLSIVDGGY-------NRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           V  T Y V+ + E                      T  +    GC   CTFC    T G 
Sbjct: 163 VAGTAYRVDGRVELGPPRPAIEELDALASPHDHFATHIVMTSRGCAWACTFCGAEATWGR 222

Query: 202 -EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
               +S+  V+D     +     ++  +  +            +    ++   + + + +
Sbjct: 223 GFRGQSVPYVLDSIEAAVAKLPVKMVQIKDDT-------FTTNRKRVIEICRGIRD-RKI 274

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
             L    +    + + L++           L L V+SGS  ILK+++++ T  +  +  +
Sbjct: 275 SFLWSCDTRVDVLGEELLREMRLAG--CQRLSLGVESGSPSILKNIDKKITVKKIIESTE 332

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
             +     I +    ++G  GET + FR T+  ++     Q      S   GT
Sbjct: 333 LAKKY--GIQVRYYMMLGNRGETAETFRETLAFLEAARPHQYIFSCLSIYPGT 383


>gi|330468268|ref|YP_004406011.1| Radical SAM domain-containing protein [Verrucosispora maris
           AB-18-032]
 gi|328811239|gb|AEB45411.1| Radical SAM domain-containing protein [Verrucosispora maris
           AB-18-032]
          Length = 456

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 51/245 (20%), Positives = 94/245 (38%), Gaps = 14/245 (5%)

Query: 162 RLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG-IEISRSLSQVVDEARKLIDN 220
            L    G   R     A L +  GC   C FC  P+        RS++ V     ++   
Sbjct: 174 PLDDFRGFSLRWDRFNA-LEVTRGCVFSCRFCQTPFMFSAKFRHRSVANVRWHVDRMRAR 232

Query: 221 GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLI-- 278
           G+ ++  +     ++  +  +       +LL S  E  G     +  S P ++    +  
Sbjct: 233 GLRDVRFITPTALSYGSQAEEPNLDAVEELLASCKEGIGPNGRVFFGSFPSEIRPEHVSR 292

Query: 279 KAHGDLDVLM--PYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFI 336
            A   +        + +  QSGSDR+L +  R H   E ++       +     I+ D I
Sbjct: 293 AALRLVKKYCANNNIIVGAQSGSDRVLDAAKRGHGVEEVKRAARL--GIEEGFRINVDMI 350

Query: 337 VGFPGETDDDFRATMDL---VDKIGYAQAFSFKYSPRLGTPGSNMLE-QVDENVKAERLL 392
            G PGE++ D   ++ L   + ++G A+  +  + P  GTP  +     VD     + + 
Sbjct: 351 FGMPGESEQDVADSLRLAGELAEVG-ARIHAHTFMPLPGTPWRDAPPGDVDPETIRQ-VD 408

Query: 393 CLQKK 397
            L ++
Sbjct: 409 RLSQR 413


>gi|312114808|ref|YP_004012404.1| radical SAM protein [Rhodomicrobium vannielii ATCC 17100]
 gi|311219937|gb|ADP71305.1| Radical SAM domain protein [Rhodomicrobium vannielii ATCC 17100]
          Length = 454

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 64/367 (17%), Positives = 129/367 (35%), Gaps = 63/367 (17%)

Query: 40  DSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGG 99
           DS  +     S         +  D+I +        AA        R  ++  +++    
Sbjct: 68  DSEELARRLKS---------EKPDVIGITAMTPTLPAA-------LRAADIARAQV---P 108

Query: 100 DLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR----------- 148
              +V+ G     + E ++   P V+ V+  +      +LL   + G             
Sbjct: 109 ASTIVLGGVHPTLDPETVIA-HPSVDFVIRGEGEEAFSQLLRALQSGGEGLGQVQGLCFR 167

Query: 149 -----VVDTDYSVEDKFERLSIVDGGYNRKRGVTAF-----------LTIQEGCDKFCTF 192
                 +     + +  + +   D G                     + +  GC   C+F
Sbjct: 168 TGGGIHISEKAQLAENLDSIPGADYGAFPVERYIEHNSLLRTVRGISMIVSRGCPYNCSF 227

Query: 193 CVVPYTRGIE-ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLL 251
           C V  T G +   +S ++VVDE  +L D+   E      ++        + +     +  
Sbjct: 228 CAVQQTMGRKWRFKSPAKVVDEVIRLRDDHGIEGVWFKDSI-------FNLKPAWTKEFC 280

Query: 252 YSLSEIK-GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
             + E K G+     T  +  D  + ++     L      + L ++SGS + L  +N++ 
Sbjct: 281 RLMIERKAGIEWQALTRINLLDEDELIMMKAAGL----TQIDLGIESGSPKSLVRLNKKI 336

Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370
           T  + ++ +   +     + +   F++G PGE +DD R T DL   +   +     YSP 
Sbjct: 337 TVDQIKEKVALAKR---HLRVFGFFMIGIPGEDEDDVRQTFDLAKSLELDRWSWSIYSPL 393

Query: 371 LGTPGSN 377
            G+P  +
Sbjct: 394 PGSPLYD 400


>gi|20094368|ref|NP_614215.1| Fe-S oxidoreductase family protein [Methanopyrus kandleri AV19]
 gi|38258812|sp|Q8TWU9|Y932_METKA RecName: Full=Uncharacterized protein MK0932
 gi|19887436|gb|AAM02145.1| Fe-S oxidoreductase family protein [Methanopyrus kandleri AV19]
          Length = 523

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 57/285 (20%), Positives = 109/285 (38%), Gaps = 14/285 (4%)

Query: 184 EGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
           EG    C FC VP   G   SR L++VV E R L+  G+  + L   +V  +    L  +
Sbjct: 214 EGIPPGCGFCSVPSIFGPTRSRPLNEVVREVRGLVREGIRRVVLSASDVLDYGRGDLLTD 273

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLI-KAHGD-LDVLMP--YLHLPVQSGS 299
             T    + +L  +              ++  CL+ +   + L        + + V++G 
Sbjct: 274 PRTPPPNVEALRRLLRRTSKHVDVLFVENVKACLLNREIAELLGEYCRGTSVSVGVETGD 333

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD---K 356
            R+L+++ +  T  E  + I  +R     +   + F+ G PG+T    + T   +    +
Sbjct: 334 PRLLRAIGKPSTLKEALRAIRLLRRA--GLRPHAYFVYGLPGQTMKSAKLTAKAMKRAVE 391

Query: 357 IGYAQAFSFKYSPRLGTPGSNMLE-QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIE 415
           +G  +   +++ P   +   +        N +A RL+      R    +     +G+ I 
Sbjct: 392 MGAEKITVYRFRPIPASAFGDFPPGPSPRNDEASRLIA--DTARRLNEALKRRMIGKRIR 449

Query: 416 VLIEKHG-KEKGKLVGR-SPWLQSVVLNSKNHNIGDIIKVRITDV 458
           V + +   +     +G        V L      +G   +V IT V
Sbjct: 450 VYVAEPDLRRPRDAIGWPVKGGPKVRLKGARELVGTECEVEITGV 494


>gi|148658313|ref|YP_001278518.1| radical SAM domain-containing protein [Roseiflexus sp. RS-1]
 gi|148570423|gb|ABQ92568.1| Radical SAM domain protein [Roseiflexus sp. RS-1]
          Length = 576

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 48/244 (19%), Positives = 83/244 (34%), Gaps = 22/244 (9%)

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGG--------YNRKRGVTAFLTIQEGCDKFCTFC 193
           R   G+  ++ D    +  + L +                 G   F+    GC   C +C
Sbjct: 257 RNEHGEVQINPDRPFIENLDSLPLPLHHMLPWKKYKVPIVGGPYTFVLTSRGCPAGCRYC 316

Query: 194 VVPYTRGIE-ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLY 252
           +   T       RS   V++E   L + G+  I                 +K    DL  
Sbjct: 317 IKHVTYQASVRHRSPQHVLEEMYMLKEMGMHHIHFEADLFTV--------KKEFVYDLCN 368

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
           ++ +  G+       S    + +  +         M  +   ++SGS+ +LK   +  T 
Sbjct: 369 AIIK-DGIKLQWSCNSRVDFVDEEELALMKKAGCFM--IAWGLESGSEAVLKRARKGTTV 425

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
               + I   R V   I     FI+G PGET +  + T+ L  ++    A     +P  G
Sbjct: 426 KRIEETIHASRKV--GIKNWGYFIIGLPGETVETIQQTIALSKRLPLDIALFHIATPYPG 483

Query: 373 TPGS 376
           TP  
Sbjct: 484 TPFY 487


>gi|147921177|ref|YP_685012.1| Fe-S cluster-binding oxidoreductase [uncultured methanogenic
           archaeon RC-I]
 gi|110620408|emb|CAJ35686.1| predicted Fe-S cluster-binding oxidoreductase [uncultured
           methanogenic archaeon RC-I]
          Length = 481

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 54/368 (14%), Positives = 118/368 (32%), Gaps = 54/368 (14%)

Query: 43  RMEDMFFSQGYERV--NSMDDA-------------DLIVLNT--CHIREKAAEKVYSFLG 85
            +  +  S G+E    +++ +              D ++++T      E A       L 
Sbjct: 43  YIATVLKSAGHEVTLLDAIGEGRTLEYVKSKICNYDCLIISTSTMSFHEDAD-----ILK 97

Query: 86  RIRNLKN--SRIKEGGDLLVVVAGCVAQAEGEEILRRSPI------VNVVVGPQTYYRLP 137
            +++     + I  G     +   C+++   +  +   P       V  +      ++  
Sbjct: 98  ELKSANPLLTTIIFGSHPTFMPGHCLSEESVDVTVINEPEITIRELVEQIGQGDDRWKSV 157

Query: 138 ELLERARFGKRVVDTDYSVEDKFERLSIVDG----------GYNRKRGVTAFLTIQEGCD 187
           + +     G+ +++      +  + L   D               ++   A +    GC 
Sbjct: 158 KGIGYTYNGRPIINESRPFIENLDELPFPDRTLLPQSIDYFHPLVRKMPYATMMTSRGCP 217

Query: 188 KFCTFCVVPYTRGI-EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT 246
             C FC V    G    SRS   ++ E   +   G  EI    +    ++    D  K  
Sbjct: 218 GSCNFCTVGRFYGKKIRSRSTGNIISEIEIIHSQGYREIFFRDETFTFFK----DRNKKF 273

Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306
             +L+     +  +   R  T           +           + + V+SG  RIL ++
Sbjct: 274 CEELINRKYNLSWIANARVGTID-----YETARLMKQAG--CHTIKIGVESGVQRILNNI 326

Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
            +  T    ++    ++     I   +  ++G PGET +    T+  + +I         
Sbjct: 327 KKGITVENTKKTFKILKEA--GIDTHAHMMIGCPGETRETIDETLKFIKEICPTTVTMAI 384

Query: 367 YSPRLGTP 374
            +P  GT 
Sbjct: 385 CTPYPGTE 392


>gi|148265002|ref|YP_001231708.1| radical SAM domain-containing protein [Geobacter uraniireducens
           Rf4]
 gi|146398502|gb|ABQ27135.1| Radical SAM domain protein [Geobacter uraniireducens Rf4]
          Length = 476

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 58/317 (18%), Positives = 114/317 (35%), Gaps = 43/317 (13%)

Query: 92  NSRIKEGGDLLVVVAGCVAQAEGEE-ILRRSPIVNVVVGPQTYYRLPELLERA------- 143
                +    + V+ G       EE +      V++V   +  Y   EL E         
Sbjct: 89  RRIKAQKPATITVLTGPHVSILPEESLRFADGAVDIVCRGEFDYSTKELCEGKAWDTVDG 148

Query: 144 ----RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTI-----------QEGCDK 188
               + GK V   D       + L      Y R   V  ++               GC  
Sbjct: 149 ISFLKDGKAVHTPDRPPIQDLDALPFASQVYMRDLPVNEYIIPHFKHPYISIYSSRGCPS 208

Query: 189 FCTFCVVPY-TRGI-EISRSLSQVVDEARKLIDN--GVCEITLLGQNVNAWRGKGLDGEK 244
            C +C+ P    G     RS   V  E + ++DN  GV EI+       A R        
Sbjct: 209 KCIYCLWPQTFSGRTMRVRSAENVYQEVKWIVDNIPGVKEISFDDDTFTANR-------- 260

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304
               +   +++E    + + +T +   +     ++   +    + ++ +  +SG+++ILK
Sbjct: 261 ----EHARAVAEKIKPLGISWTINARANCDYETLRIMREAG--LRHVVVGFESGNEQILK 314

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
           ++ +  T  +  + +   + +   +++   FI+G PGET +  R T++    +       
Sbjct: 315 NIKKGVTKAQAIEFVRNCKKL--GLSVHGAFIMGLPGETRETIRETIEYAKFLDLNSIQV 372

Query: 365 FKYSPRLGTPGSNMLEQ 381
              SP  GT   ++ +Q
Sbjct: 373 SLASPYPGTEFYDLCKQ 389


>gi|251771821|gb|EES52395.1| Radical SAM superfamily protein [Leptospirillum ferrodiazotrophum]
          Length = 447

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 67/329 (20%), Positives = 130/329 (39%), Gaps = 39/329 (11%)

Query: 54  ERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAE 113
           +++    D DL+ + T      +A + Y    + R  K         + VV+ G  +   
Sbjct: 58  QKIPYEGDFDLVAITT---TTGSANRAYEISRKFRERK---------IPVVMGGFHSTLH 105

Query: 114 GEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGY--- 170
             + L      + VV  +      ELL+  R GK  + + Y  E   +  S+    Y   
Sbjct: 106 PADTLL---HADSVVVGEAENVWGELLDDCRRGK--IKSLYKAEQPSDMKSLPRPRYELL 160

Query: 171 --NRKRGVTAFLTIQEGCDKFCTFCVVPYTR-GIEISRSLSQVVDEARKLID-NGVCEIT 226
             +R R     +    GC+  C FC VP    G    R +  +V+E R+     G+ +  
Sbjct: 161 DLSRYRIHMMPIQATRGCNYHCDFCEVPVVYDGAYRMRPVEDIVEEIRQQKKIMGINQFQ 220

Query: 227 LLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV 286
            +   +         G+     +L  +L  +       +T +   D  + L+     +D 
Sbjct: 221 FIDDQLT--------GKHAFARELFKALKPLDIKWSCLWTLNTNHD--EELLDL--AIDA 268

Query: 287 LMPYLHLPVQSGSDRILKSMNRR-HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDD 345
              ++++ ++S +   L  ++++ +   +Y  ++  +   R  +  S + + G   +T D
Sbjct: 269 GCIHVNIGMESINQANLNDIHKKQNHVKDYIDLLKAMEKRR--LFYSLNLMFGLDHDTPD 326

Query: 346 DFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
            F AT+D ++K+    AF    SPR GTP
Sbjct: 327 VFPATLDFLEKVRAPLAFFSIVSPREGTP 355


>gi|206602111|gb|EDZ38593.1| Putative radical SAM family protein [Leptospirillum sp. Group II
           '5-way CG']
          Length = 479

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 62/359 (17%), Positives = 122/359 (33%), Gaps = 55/359 (15%)

Query: 52  GYERVNSMDDA---DLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGC 108
           G++   ++  A   D+++L T      + +         ++L          +LV   G 
Sbjct: 58  GWDVGKTLSLAKEFDIVILYTST---PSLQNDIQIAKGFKSL-------NPSILVGFVGP 107

Query: 109 VAQAEGEEILRRSPIVNVVVGPQTYYRLPEL-----------LERARFGKRVVDTDYSVE 157
                 E  L+  P+++ VV  +  + +PE+           +     G+     D  V 
Sbjct: 108 HPSVLPELTLKADPVIDFVVREEFDHAIPEIANGKPWDEVLGIHYRIDGEIRSTPDRPVL 167

Query: 158 DKFERLSIVDGGYNR---------KRGVTAFLTI--QEGCDKFCTFCVVP--YTRGIEIS 204
           +  + L      Y R               +++I    GC   CTFC+ P  ++  +  +
Sbjct: 168 ENLDNLPFASEVYRRDLNIMDYEIPWMKYPYVSIYTGRGCGSKCTFCLWPQTFSGNVYRT 227

Query: 205 RSLSQVVDEARKLIDN--GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           RS+  V+ E   +     G+ E+      +  +R            D    LSE      
Sbjct: 228 RSVENVIKEVAYIKKTFPGIKELFFDDDTLTEYR------------DRTRELSEALKPFN 275

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           L +  +   ++    +K   D       + +  +SG+ +IL ++ +     +  +     
Sbjct: 276 LSWGCNSKANVDFETLKMMKDSG--CRVMVVGYESGNQQILNNVKKGIRIEQATEFTRNA 333

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
             +   + I   FI G PGET      T+     +          SP  GT   N  ++
Sbjct: 334 HQL--GMKIHGTFIFGLPGETPQTIEETIQFACDMDIETLQVSLASPYPGTHFYNFAKE 390


>gi|330901645|gb|EGH33064.1| ribosomal protein S12 methylthiotransferase [Pseudomonas syringae
           pv. japonica str. M301072PT]
          Length = 162

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 50/123 (40%), Gaps = 7/123 (5%)

Query: 353 LVDKIGYAQAFSFKYSPRLGTPGSNMLEQ-VDENVKAERLLCLQKKLREQQVSFNDACVG 411
            + +    +   F+YSP  G P + +    V ++VK +R        +    +     +G
Sbjct: 40  WLTEAQLDRVGCFQYSPVEGAPANLLDAAIVPDDVKQDRWDRFMAHQQAISAARLQMKIG 99

Query: 412 QIIEVLIEKHGKEK--GKLVGRSPWLQSVVL----NSKNHNIGDIIKVRITDVKISTLYG 465
           + IEVLI++       G+    +P +   V     +      GD I  R+TD     L+ 
Sbjct: 100 KEIEVLIDEVDDRGAVGRCFFDAPEIDGSVFIGLEDGSTVQPGDKIMCRVTDADEYDLWA 159

Query: 466 ELV 468
           E++
Sbjct: 160 EVL 162


>gi|220929756|ref|YP_002506665.1| radical SAM protein [Clostridium cellulolyticum H10]
 gi|220000084|gb|ACL76685.1| Radical SAM domain protein [Clostridium cellulolyticum H10]
          Length = 426

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 67/348 (19%), Positives = 125/348 (35%), Gaps = 40/348 (11%)

Query: 44  MEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLV 103
           +  +        ++ +++A++  + T       A+K    LG IR             +V
Sbjct: 47  LSGVLEDN---LIDYIEEAEIYGIGTYSATYGIAQK---LLGEIREK-------YPKSIV 93

Query: 104 VVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERL 163
           V  G  A A  EE+ R   +V    G   +Y L + ++     +R+++ +  V    + L
Sbjct: 94  VAGGPHASALSEEVARDFDVVICGEGEYVFYDLIKKVKEGLMPERIIEAE--VIKNLDDL 151

Query: 164 SIVDGGY---------NRKRGVTAFLTIQEGCDKFCTFCVVPYT-RGIEISRSLSQVVDE 213
              D GY                  L    GC+  C FC    + RG   +RS   V++E
Sbjct: 152 PFPDYGYFCNMSKYTRRIDNMPVICLDSSRGCNFTCRFCNSNVSKRGYWRARSPESVIEE 211

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
            R   D G         N  A      D ++      +     IK L       +    +
Sbjct: 212 VRMHYDKGWRAFRFNDDNFLA------DPKRA-----MKICQLIKPLNIKWRIFARAESL 260

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
           S  + +   D      ++ + ++S S  +L  M +  +    +  ++        I    
Sbjct: 261 SLDICRTLLDSG--CTHISVGIESLSASMLSKMGKATSIERIKWGLNNAFEA--GIRTRG 316

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
            FIVGFPGE+++    T+  ++ +   +A  +   P  GT   +  + 
Sbjct: 317 FFIVGFPGESNETISETIKSLEDLKLGEATVYPCLPYPGTDLYSRPDH 364


>gi|320160982|ref|YP_004174206.1| hypothetical protein ANT_15780 [Anaerolinea thermophila UNI-1]
 gi|319994835|dbj|BAJ63606.1| hypothetical protein ANT_15780 [Anaerolinea thermophila UNI-1]
          Length = 544

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 55/276 (19%), Positives = 98/276 (35%), Gaps = 37/276 (13%)

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCV--VPYTRGIEISRS 206
           + D D       E L +        +G   F+    GC   CT+C+  V Y       RS
Sbjct: 243 IADLDDLPIPAHELLPLQSYRMPMMKGPFTFIVTSRGCTAGCTYCIKHVSYQYT-VRLRS 301

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
             ++V+E   L   G+  I +        R + +D        L   + + +GL      
Sbjct: 302 PEKIVEELWVLKKLGINNIHMYADLFTVSRDQVVD--------LCRLIID-QGLKIKWTC 352

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
            S    + + ++           ++   ++SG+++IL+   +          +   +   
Sbjct: 353 NSRVDYVDEEMLNLMAKAG--CWFISWGIESGNEQILRHARKGAYPERAIHSLTLAKKA- 409

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS---------- 376
             I     FI+G PGET++  R T+D    +    A     +P  GTP            
Sbjct: 410 -GIRNWGYFIIGLPGETEETIRQTIDFAKSLPLDLALFHIAAPYPGTPFFFEVVREGWFR 468

Query: 377 --NMLEQVD---------ENVKAERLLCLQKKLREQ 401
                EQVD          ++ AERL+  Q++   +
Sbjct: 469 KGTRWEQVDMDKETVLDYPHLPAERLMYWQRRAFRE 504


>gi|156740474|ref|YP_001430603.1| radical SAM domain-containing protein [Roseiflexus castenholzii DSM
           13941]
 gi|156231802|gb|ABU56585.1| Radical SAM domain protein [Roseiflexus castenholzii DSM 13941]
          Length = 576

 Score =  104 bits (259), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 48/244 (19%), Positives = 82/244 (33%), Gaps = 22/244 (9%)

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGG--------YNRKRGVTAFLTIQEGCDKFCTFC 193
           R   G+  ++ D    +  + L +                 G   F+    GC   C +C
Sbjct: 257 RNEHGEVQINPDRPFIENLDSLPLPLHHMLPWKKYKVPIVGGPYTFVLTSRGCPAGCRYC 316

Query: 194 VVPYTRGIE-ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLY 252
           +   T       RS   V++E   L + G+  I                 +K    DL  
Sbjct: 317 IKHVTYQASVRHRSPQHVLEEMYMLKEMGMHHIHFEADLFTV--------KKEFVYDLCN 368

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
           ++ +  G+       S    +    +         M  +   ++SGS+ +LK   +  T 
Sbjct: 369 AIIK-DGIKLQWSCNSRVDFVDAEELALMKKAGCFM--IAWGLESGSEAVLKRARKGTTV 425

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
               + I   R V   I     FI+G PGET +  + T+ L  ++    A     +P  G
Sbjct: 426 KRIEETITASRKV--GIKNWGYFIIGLPGETVETIQQTIALSKRLPLDIALFHIATPYPG 483

Query: 373 TPGS 376
           TP  
Sbjct: 484 TPFY 487


>gi|312137248|ref|YP_004004585.1| radical sam domain protein [Methanothermus fervidus DSM 2088]
 gi|311224967|gb|ADP77823.1| Radical SAM domain protein [Methanothermus fervidus DSM 2088]
          Length = 444

 Score =  104 bits (259), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 79/390 (20%), Positives = 142/390 (36%), Gaps = 46/390 (11%)

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVV-GPQTYYRLPELLE 141
            + +      S  K   ++L V+ G  A     + LR  P ++VVV G          LE
Sbjct: 49  LIKKALEYIKSIKKLLPNILTVIGGPHATFLPIKTLRECPELDVVVIGEGEETFKELALE 108

Query: 142 RARFGKRVVDTD--YSVEDKFERLSIVDGGYNRKR------GVTAFLTI----------- 182
               GK+ ++     +  D  ERL I D     +            +             
Sbjct: 109 YESKGKKCLEKIRGIAYRDNDERLHINDPRPLIENLDEIPFPARHLVPFKEYNLSEETGG 168

Query: 183 ---QEGCDKFCTFCVVPYTRG-IEISRSLSQVVDEARKLI-DNGVCEITLLGQNVNAWRG 237
                GC   C +C      G     RS   +VDE  +L+ D  V EIT L       R 
Sbjct: 169 IISSRGCPYNCEYCSSSKMMGKRFRYRSAENIVDEIEELVNDYNVREITFLDDTFTIHRR 228

Query: 238 KGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL-MPYLHLPVQ 296
           +  +      ++L     +I   +  R  T +             +L  + +  ++   +
Sbjct: 229 RIEEF----CNELKNRDLDIDFTISSRVDTINR--------DTLKNLKTVGLNRIYYGAE 276

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
           SGS R+L  M +  T  + +  +   +++  ++   + F+ G+PGET D+   T+D   K
Sbjct: 277 SGSQRVLNLMKKGITLKQIKDAVKVAKNL--NLQTVTSFMFGYPGETLDEMNKTIDFSIK 334

Query: 357 IGYAQAFSFKYSPRLGTPGS---NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQI 413
           +          +P  GTP          ++EN   E    L   ++ +++  +   V +I
Sbjct: 335 LDPDYCQYSILTPFPGTPIYYKLKRKGLINEN--WEEYTVLNPVIKYEKLGLSKKLVKKI 392

Query: 414 IEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443
           +E    K       L+ + PW+  V + + 
Sbjct: 393 LEKAYVKFYARPSYLI-KHPWMFKVFIETT 421


>gi|253701958|ref|YP_003023147.1| radical SAM protein [Geobacter sp. M21]
 gi|251776808|gb|ACT19389.1| Radical SAM domain protein [Geobacter sp. M21]
          Length = 564

 Score =  104 bits (259), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 66/303 (21%), Positives = 105/303 (34%), Gaps = 38/303 (12%)

Query: 99  GDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG---KRVVDTDYS 155
              LV + G  A     E+L   P V++VV  +    L EL++    G     V    Y 
Sbjct: 89  PRCLVALGGPHATHCWRELLEGHPEVDLVVLGEGEATLCELVQAKALGTPFDTVAGLAYR 148

Query: 156 VEDKFERLSIVDGGYNRK-----------------RGVTAFLTIQEGCDKFCTFCVVPYT 198
              K    +      +                   R    F+    GC   C FC  P  
Sbjct: 149 TAGKACLSAPRAPLADLDLLPLPGEAEGDSIGVDFRRQLEFVITSRGCPASCLFCSSPLF 208

Query: 199 RGI-EISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256
            G     RS   VV E R L +  G+   +       A RG+            +  L  
Sbjct: 209 WGRGVRFRSPESVVHEIRSLKERYGLIYFSFRDDTFTANRGR---------VLQICRLLR 259

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
            + L  +    S    + + ++ A          +   V+SGS ++LK++ +R       
Sbjct: 260 EERLHVMWNCQSRVNAVDEEMLIAMKQAG--CECIQFGVESGSPQMLKALGKR--ILPPE 315

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
                    R  I +S   I G PGE ++D R T+ L++ I   +    + SP +  PG+
Sbjct: 316 VERAAAAVRRAGINLSVYLITGIPGEGEEDLRQTVRLIESI---RPHDGQVSPLVYYPGT 372

Query: 377 NML 379
            +L
Sbjct: 373 ELL 375


>gi|189426106|ref|YP_001953283.1| radical SAM protein [Geobacter lovleyi SZ]
 gi|189422365|gb|ACD96763.1| Radical SAM domain protein [Geobacter lovleyi SZ]
          Length = 518

 Score =  104 bits (259), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 62/298 (20%), Positives = 106/298 (35%), Gaps = 37/298 (12%)

Query: 99  GDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTD----- 153
            D ++++ G  A  + E IL+  P V++V   +    L ELLE    G  +         
Sbjct: 91  PDTIILLGGGHATHQAELILKHHPEVDLVAVGEAEQTLLELLEALDNGSPLTAVPGLVMR 150

Query: 154 ----------YSVEDKFERLSIVDGGYNRKRGV-----TAFLTIQEGCDKFCTFCVVPYT 198
                            + L       +    V       F++   GC   C+FC  P  
Sbjct: 151 DNGTIRRTGQRPPWPDLDHLPFPFLWLHEAINVDQPLQAEFISSSRGCPAACSFCASPAF 210

Query: 199 RGI-EISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256
            G     RS   V +E   L D+ G+  ++L      A        ++    +L   L E
Sbjct: 211 WGRRVRYRSAHSVAEEMLYLRDHYGLLYLSLRDDTFTA--------DRRRTVELCRELIE 262

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL-MPYLHLPVQSGSDRILKSMNRRHTAYEY 315
                R+    +    +     +    +       + L V+SGS  +LK + +R T  + 
Sbjct: 263 ----RRVNIFWNCQSRVEAIDCETLAWMRRAGCECVQLGVESGSSAMLKLLGKRITPEQV 318

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
            +  D IR     + +S   I G P E+D D + T++L+ +I          +   GT
Sbjct: 319 VEAADLIRQS--GMQLSVYLITGIPEESDADRQQTINLIKRIQPDDLQVAPLAYYPGT 374


>gi|116626541|ref|YP_828697.1| radical SAM domain-containing protein [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116229703|gb|ABJ88412.1| Radical SAM domain protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 486

 Score =  103 bits (258), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 56/319 (17%), Positives = 109/319 (34%), Gaps = 42/319 (13%)

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL--------- 139
            +          L V   G     E ++ L  +  ++ VV  +  +++ +          
Sbjct: 86  KMATMMKDVNPKLKVAFVGPPVTTEPDKTLIGTKAIDFVVRREFDHQIVDYAKGKPLEEL 145

Query: 140 --LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAF-----------LTIQEGC 186
             +   + G  V + +    +  + L  V   Y R   +T +           L    GC
Sbjct: 146 PGVSFRKNGHIVNNPEGPAIEDLDALPWVTKVYKRDLDITRYNVPFLLNPFVSLYTSRGC 205

Query: 187 DKFCTFCVVPYTRG--IEISRSLSQVVDEARKLIDN--GVCEITLLGQNVNAWRGKGLDG 242
              CTFC+ P T        RS   V +E R  ++    + EI       N  + + +  
Sbjct: 206 PALCTFCLWPQTHSGHRWRLRSSDDVANEVRYALEQFPQMKEIFFDDDTFNYRKERTI-- 263

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
                      L +    +   ++ +         +KA  +       L +  +SG  +I
Sbjct: 264 ----------ELCKKLKPLNFTWSCTSRVTTDYETLKAMKEAG--CRLLIVGYESGDQQI 311

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           LK++ +  T     +     + +   + +  DFI+G PGET +  R T+D   ++     
Sbjct: 312 LKNIKKGATVDMAERFTANCKKL--GLLVHGDFIIGLPGETRESIRKTIDFAKRLDNETI 369

Query: 363 FSFKYSPRLGTPGSNMLEQ 381
                 P  GT   + ++Q
Sbjct: 370 QVSIAHPYPGTEFYDYVKQ 388


>gi|167947811|ref|ZP_02534885.1| hypothetical protein Epers_15217 [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 213

 Score =  103 bits (258), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 61/222 (27%), Positives = 97/222 (43%), Gaps = 20/222 (9%)

Query: 99  GDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVED 158
               +VV GC A  +       +  V++VV  Q   +L ++++R       +D +   + 
Sbjct: 7   PQARLVVTGCYASLDPTASAS-ADGVDLVVPNQDKEQLVQIVQRE------LDLNIMPQS 59

Query: 159 KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL-SQVVDEARKL 217
             E  S   GG   +    AF+ +Q+GC   CTFC+V   RG E SR    +V+ E  +L
Sbjct: 60  VTEEES---GGLLARGRQRAFIKVQDGCRYRCTFCIVTLARGEERSRPADEEVIAEINRL 116

Query: 218 IDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCL 277
              G+ E+ L G ++    G  +D +     D + + SEI    RLR  +  P D+ D  
Sbjct: 117 HSEGIQEVVLTGVHLGG-YGSDIDSDLGQLIDRVLADSEIP---RLRVGSLEPWDLPDNF 172

Query: 278 IKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
                D    MP+LHLP+Q    R  +     H A    + +
Sbjct: 173 WSRF-DNPRFMPHLHLPLQ----RRQRLCIATHGAPLQERRV 209


>gi|288931012|ref|YP_003435072.1| radical SAM protein [Ferroglobus placidus DSM 10642]
 gi|288893260|gb|ADC64797.1| Radical SAM domain protein [Ferroglobus placidus DSM 10642]
          Length = 496

 Score =  103 bits (257), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 62/270 (22%), Positives = 119/270 (44%), Gaps = 20/270 (7%)

Query: 100 DLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDK 159
           D+ VVV G  A    EE +RR   ++VVV  +    +PEL  +   G+ V +  Y V   
Sbjct: 141 DVKVVVGGAGAWQLEEERIRRKYGIDVVVIGEGEKVVPELFRKIIEGEDVPEVVYGVAVP 200

Query: 160 FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLID 219
            + +  +     R+  +   + I  GC + C FC +P  R    SR L  +++EAR +  
Sbjct: 201 EDEIPKI-----RRAAIGGIVEIARGCGRGCKFC-IPTMR-RLRSRPLEDILEEAR-VTA 252

Query: 220 NGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIK 279
                +TL  ++V  ++ KG    K     L   +  I G V + +        +  +++
Sbjct: 253 RDKDIVTLHAEDVLRYKAKGFTINKEEVLRLFREVHRIVGKVGISHFALSSVASAPDVVE 312

Query: 280 AHGDL----DVLMPYL--HLPVQSGSDRILKSMN----RRHTAYEYRQIIDRIRSVR--P 327
              ++    +    +L     +++GS R+++       +  +A E+R ++ +   +    
Sbjct: 313 EISEILELPNKEQKWLAGQTGIETGSPRLIEKYMPGKAKPFSASEWRDVVIQAFQICSDA 372

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKI 357
                +  IVGFP E ++D   T++LV+ +
Sbjct: 373 HWVPCATLIVGFPDEREEDIIKTIELVEDL 402


>gi|251773107|gb|EES53661.1| Radical SAM domain protein [Leptospirillum ferrodiazotrophum]
          Length = 483

 Score =  103 bits (257), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 60/342 (17%), Positives = 114/342 (33%), Gaps = 52/342 (15%)

Query: 63  DLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSP 122
           D++VL T          + + +   + LK         +LV   G       E  ++  P
Sbjct: 76  DMVVLYTST------PSLKNDIMTAQGLKAR----NPRMLVGFVGPHPSVLPELTMKADP 125

Query: 123 IVNVVVGPQTYYRLPEL-----------LERARFGKRVVDTDYSVEDKFERLSIVDGGYN 171
           +++ VV  +  Y +PE+           +   R G+ + + D  V +  + L      Y 
Sbjct: 126 VIDFVVREEFDYAIPEIARGAKLEDVAGIHFRRDGQIIGNPDRPVIENLDVLPFASQVYA 185

Query: 172 RKRGVTAF-----------LTIQEGCDKFCTFCVVP--YTRGIEISRSLSQVVDEARKLI 218
           R   ++ +           +    GC   CTFC+ P  ++  +   RS+  V+ E    I
Sbjct: 186 RDLKISDYEIPWMRFPYISIYTGRGCGSKCTFCLWPQTFSGNVYRVRSVENVLQEV-AYI 244

Query: 219 DNGVCEI--TLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDC 276
                +I       +                 D    LSE      L +  +   ++   
Sbjct: 245 KKTFPQIKELFFDDDTLTEY-----------RDRTRELSEGLKSFGLSWGCNSKANVDYD 293

Query: 277 LIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFI 336
            +K   D       + +  +SG+  IL ++ +     +  +       +   + I   F+
Sbjct: 294 TLKIMRDSG--CRVMVVGYESGNQTILNNVKKGIRVEQAEKFTRDAHQL--GMTIHGTFM 349

Query: 337 VGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           VG PGET +    T+    ++          SP  GT     
Sbjct: 350 VGLPGETPETIDETISFASRLNIETLQVSLASPYPGTHFYEY 391


>gi|322418328|ref|YP_004197551.1| Radical SAM domain-containing protein [Geobacter sp. M18]
 gi|320124715|gb|ADW12275.1| Radical SAM domain protein [Geobacter sp. M18]
          Length = 568

 Score =  103 bits (256), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 66/303 (21%), Positives = 111/303 (36%), Gaps = 38/303 (12%)

Query: 99  GDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR---------- 148
               VV+ G  A    +E L R   ++ +V  +    L EL+E    G+           
Sbjct: 89  PASFVVLGGPHATHSWQEQLERHGELDAIVLGEGEETLAELVEARAAGRALSSVPGLAWR 148

Query: 149 -----VVDTDYSVEDKFERLSIVDGGYNRKRGV-----TAFLTIQEGCDKFCTFCVVPYT 198
                V+    +   + +RL           GV       F+    GC   C FC  P  
Sbjct: 149 EGGRGVLTPSRAPITELDRLPSPAEDPGETIGVDLRRQLEFVITSRGCPASCLFCSSPLF 208

Query: 199 RGI-EISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256
            G     RS + VV E R L +  G+   +       A         +    ++   + E
Sbjct: 209 WGRGVRFRSPASVVQELRMLKERYGLIYFSFRDDTFTA--------NRARVLEICRLIEE 260

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
            + L  L    S    +   ++ A          +   V+SGS  +LK++ +R    +  
Sbjct: 261 -QRLHILWNCQSRVNAVDQEMLVAMKRAG--CECIQFGVESGSPEMLKALGKRILPADVE 317

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
           +    +R V   I +S   I G PGE + D + T+ L+D+I   +    + SP +  PG+
Sbjct: 318 RAAAAVRRV--GINLSVYLITGIPGEGEGDLQQTVRLIDRI---RPQDGQVSPLVYYPGT 372

Query: 377 NML 379
            +L
Sbjct: 373 ELL 375


>gi|189426139|ref|YP_001953316.1| hopanoid biosynthesis associated radical SAM protein HpnJ
           [Geobacter lovleyi SZ]
 gi|189422398|gb|ACD96796.1| hopanoid biosynthesis associated radical SAM protein HpnJ
           [Geobacter lovleyi SZ]
          Length = 476

 Score =  103 bits (256), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 59/346 (17%), Positives = 131/346 (37%), Gaps = 53/346 (15%)

Query: 63  DLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRR-S 121
           D++V+ T         +    +  ++           D++ V+ G       EE L+   
Sbjct: 70  DMVVMYTSTPTLAIDIETARRIKEVK----------PDIVTVLTGPHVSILPEESLKAGH 119

Query: 122 PIVNVVVGPQTYYRLPELLER-----------ARFGKRVVDTDYSVEDKFERLSIVDGGY 170
            I+++V   +  Y   EL E             + GK +   D  + +  + L  V   Y
Sbjct: 120 GIIDIVCRGEFDYSTKELCEGRDWSKVDGISFIKDGKTIHTPDRPLIEDLDALPFVAPIY 179

Query: 171 NRKRGVTAFLTI-----------QEGCDKFCTFCVVPY-TRGI-EISRSLSQVVDEARKL 217
            R   ++ ++               GC   C +C+ P    G     RS   V +E + +
Sbjct: 180 KRDLPISEYVIPHFKNPYVSIYSSRGCPSKCIYCLWPQTFSGRQMRLRSPQNVYEEVKWI 239

Query: 218 IDN--GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSD 275
           +DN   + E++       A R            +   +++ +   + + +T +   +   
Sbjct: 240 VDNIPEMRELSFDDDTFTASR------------EHARNVANLLKPLGISWTINARANCDY 287

Query: 276 CLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDF 335
             +K   +    + ++ +  +SG+++ILK++ +  T  +  Q     + +   +++   F
Sbjct: 288 ETLKVMREAG--LRHVVVGYESGNEQILKNIKKGVTKEQAIQFTKDCKKL--GLSVHGAF 343

Query: 336 IVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I+G PGET +  R T++   ++      +   SP  GT    + ++
Sbjct: 344 IMGLPGETKETIRETIEYAKQLDLNSIQASLASPYPGTEFYTLAKE 389


>gi|126466025|ref|YP_001041134.1| radical SAM domain-containing protein [Staphylothermus marinus F1]
 gi|126014848|gb|ABN70226.1| Radical SAM domain protein [Staphylothermus marinus F1]
          Length = 535

 Score =  103 bits (256), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 89/520 (17%), Positives = 181/520 (34%), Gaps = 115/520 (22%)

Query: 43  RMEDMFFSQG-------YERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRI 95
            +  +  + G       YE V +  +   ++ N   I   A       L ++ NL  +  
Sbjct: 32  VVAGIIKNAGFKTDLKAYELVINKPE---LLRNYETILISAMSSDKGALSKLLNLIENIN 88

Query: 96  KEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV------ 149
            +G    ++V G ++    +E+L+ +P +N V+  +    LP+LL+    G++V      
Sbjct: 89  YKGK---IIVGGPISFEY-KELLKNNPRINYVLIGEAEIPLPKLLDNIISGEKVGNVPAV 144

Query: 150 ---------------VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKF----- 189
                          + T   +  K +    ++  Y   +    ++ +  GC  +     
Sbjct: 145 AFKDENGEIKVTSPHIYTPAEIISKNKPWVEIEKSYPDHKVYRYYVEVVRGCSNYFRPII 204

Query: 190 --------------------------------CTFCVVPYTRGIEISRSLSQVVDEARKL 217
                                           C FC VPY  G   SRS+  +V+E  +L
Sbjct: 205 SGIDGLNCIKCFICRKGDLDKRMYCPANIPPGCGFCSVPYMFGPARSRSIDSIVEEINEL 264

Query: 218 IDNGVCEITLLGQNVNAWRGKGLDGEKCTFSD-------------LLYSLSEIK----GL 260
           + +G   I L   +     G+ L  +    +D             LL SL EI       
Sbjct: 265 VGHGAKRIVLSAPDF-LDYGRDLLVKPKPLTDPCHPKPNIEMIEALLSSLFEIDRVRNKS 323

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG-SDRILKSMNRRHTAYEYRQII 319
           VR+         +++ L K  G        +H+ +++G S      + +  +     + +
Sbjct: 324 VRIFIENIKACLVTEDLAKILGKYLSG-TTIHIGLETGDSKYNSLVLGKPISVEHVYKAV 382

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK---IGYAQAFSFKYSPRLGTPGS 376
             +++    +      + G P   +  +R T+ ++ K   +G  +   +K+ P  GT   
Sbjct: 383 KLLKAN--GLRPYVYLMYGLPLANEKVYRKTLRVISKLSSLGVEKITLYKFVPLPGTAFQ 440

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFN----DACVGQIIEVLIEKHGKEKGKLVGRS 432
           N+   +      ++   +   ++++   +N     + +G+ I VL+       GK  G  
Sbjct: 441 NLKPDI------KQYSRIISLIKKKVEKYNLLTKTSFIGRKIHVLL---LHSNGKYYGYP 491

Query: 433 PWLQSVVLNSKNHNIGDI----IKVRITDVKISTLYGELV 468
                 V      + G        V I DV    L+G+ +
Sbjct: 492 INHGPTVFVKGLTSPG-FSGCEALVEIYDVAPRFLWGKFI 530


>gi|74203559|dbj|BAE23052.1| unnamed protein product [Mus musculus]
 gi|123228757|emb|CAM15625.1| CDK5 regulatory subunit associated protein 1 [Mus musculus]
          Length = 190

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 28/83 (33%), Positives = 52/83 (62%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ ++++YGCQMNV D+     +    GY R +++ +AD+I+L TC IREKA + +++ L
Sbjct: 99  RKVYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCSIREKAEQTIWNRL 158

Query: 85  GRIRNLKNSRIKEGGDLLVVVAG 107
            +++ LK  R +    L + + G
Sbjct: 159 HQLKVLKTKRPRSRVPLRIGILG 181


>gi|328952122|ref|YP_004369456.1| Radical SAM domain protein [Desulfobacca acetoxidans DSM 11109]
 gi|328452446|gb|AEB08275.1| Radical SAM domain protein [Desulfobacca acetoxidans DSM 11109]
          Length = 437

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 61/289 (21%), Positives = 112/289 (38%), Gaps = 26/289 (8%)

Query: 103 VVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK---RVVDTDYSVEDK 159
           VV+ G       EE L      + VV  +      ++LE AR  +   R     +     
Sbjct: 88  VVMGGFHITLHPEEALEHC---DAVVVGEAESVWEQVLEDARLKRLKPRYQAQGFHDMAG 144

Query: 160 FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI-EISRSLSQVVDEARKLI 218
             R  +      R R          GC   C+FC VP   G     R + +V+DE + L+
Sbjct: 145 LPRPRVELMNLRRYRVKIIPTQTSRGCPYHCSFCEVPIVYGHTYRRRPIGEVLDEIKTLV 204

Query: 219 D-NGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCL 277
               +  I  +  N+         G +    +L   L  +       +T +  RD+   L
Sbjct: 205 KVTSLRRIYFVDDNLT--------GHRDYAKELFKGLQPLNIHWSCLWTINTSRDV--EL 254

Query: 278 IKAHGDLDVLMPYLHLPVQSGSDRILKSMNR-RHTAYEYRQIIDRIRSVRPDIAISSDFI 336
           +           ++++ +++     + S+ + ++   EY  ++ R+R     +  S +F+
Sbjct: 255 LDLAKKAG--CYHINIGIENVCPESINSIAKVQNPVEEYEWLLARLRER--GLFYSLNFM 310

Query: 337 VGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            G  G+T   F  T++ V++I    AF    +PR GTP   + EQ+ + 
Sbjct: 311 FGLDGDTMALFDKTLEFVERIKAPMAFFNSITPRRGTP---LWEQLSQE 356


>gi|256840843|ref|ZP_05546351.1| Fe-S oxidoreductase [Parabacteroides sp. D13]
 gi|256738115|gb|EEU51441.1| Fe-S oxidoreductase [Parabacteroides sp. D13]
          Length = 485

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 73/345 (21%), Positives = 117/345 (33%), Gaps = 52/345 (15%)

Query: 64  LIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPI 123
           L VL+T      + +   +F G+++ L            VV+ G    A  EE L  S  
Sbjct: 80  LFVLDTST---PSIKSDVAFAGKLKAL-------YPHSFVVLVGTHPSACAEETLGYSDA 129

Query: 124 VNVVVGPQTYYRLPELLERARFGK---RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFL 180
           V+ V   +    + EL      GK    V    +    +F R + +    N      A  
Sbjct: 130 VDAVAIGEYDCIVNELANVLDAGKDLREVRGLCFWDGKEFVRTAPMPPMKNLDDLPFASQ 189

Query: 181 TIQE-----------------------GCDKFCTFCVVPYTRGIE--ISRSLSQVVDEAR 215
            I+E                       GC   C FCV P T       +RS   VV E  
Sbjct: 190 FIKEHLNERDYFFAAATYPSIQIFTGRGCPFRCNFCVYPQTMHGHAFRARSAENVVAEFE 249

Query: 216 KLIDN--GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
            +  N   V E+ +      A         K    D+   L E K   RL++  +   D+
Sbjct: 250 YIAANFPDVKEVVIEDDTFTA--------NKKRVLDICRLLVEKKLNKRLKWLCNARVDL 301

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
               + A          +   ++SGS +IL ++ +      + Q +   +     + I +
Sbjct: 302 DLETMLAMKKAG--CRLIIPGIESGSQQILDNIKKGTKVEYFYQYVANAKKA--GLLIHA 357

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
            ++VG  GET +    T+ L  ++    A  F   P  GT     
Sbjct: 358 CYMVGNQGETRETMEETLRLALRLNTDTAQFFPLIPYPGTEAYQW 402


>gi|219847746|ref|YP_002462179.1| Radical SAM domain-containing protein [Chloroflexus aggregans DSM
           9485]
 gi|219542005|gb|ACL23743.1| Radical SAM domain protein [Chloroflexus aggregans DSM 9485]
          Length = 583

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 52/245 (21%), Positives = 89/245 (36%), Gaps = 24/245 (9%)

Query: 142 RARFGKRVVDTDYSVEDKFERLSIV--------DGGYNRKRGVTAFLTIQEGCDKFCTFC 193
           R   G+  ++ D    +  + L I                 G   F+    GC   C +C
Sbjct: 256 RDEHGEVQINPDRPFIEDLDTLPIPLHDQLPWQRYKVPIVGGPYTFVLTSRGCPAGCRYC 315

Query: 194 VVPYTR-GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLY 252
           +   T       RS   V+ E   L + G+  I                 +K    DL +
Sbjct: 316 IKHVTYQSSVRHRSPHHVLQEMIMLKEMGLRHIHFEADLFTV--------KKEFVYDLCH 367

Query: 253 SLSEIKGLVRLRYTTSHPRDM-SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
           ++  IK  ++LR++ +   D   +  ++        M  +   ++SGS+ +LK   +  T
Sbjct: 368 TI--IKEGIKLRWSCNSRVDFVDEDELRLMRKAGCFM--IAWGLESGSEEVLKRARKGTT 423

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
                + I    S R  I     FI+G PGET +  + T+ L  ++    A     +P  
Sbjct: 424 VKRIEETIAA--SHRAGIMNWGYFIIGLPGETVETIQQTIALSKRLPLDIALFHIATPYP 481

Query: 372 GTPGS 376
           GTP  
Sbjct: 482 GTPFY 486


>gi|297527303|ref|YP_003669327.1| Radical SAM domain protein [Staphylothermus hellenicus DSM 12710]
 gi|297256219|gb|ADI32428.1| Radical SAM domain protein [Staphylothermus hellenicus DSM 12710]
          Length = 535

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 77/480 (16%), Positives = 162/480 (33%), Gaps = 103/480 (21%)

Query: 75  KAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYY 134
            A       L R+ +L     K      ++V G ++    +E+LR +P +N V+  +   
Sbjct: 68  SAMSSDKGALSRLLSLVE---KINYKGYIIVGGPISFEY-KELLRNNPRINYVLIGEAEI 123

Query: 135 RLPELLERARFGKRV---------------------VDTDYSVEDKFERLSIVDGGYNRK 173
            LP+LL++   GK V                     + T   +  + +    ++  Y   
Sbjct: 124 PLPKLLDKILTGKNVGGVPAIAFRDESGEIKATSPHLYTPAEIISRNKPWIEIEKSYPDH 183

Query: 174 RGVTAFLTIQEGCDKF-------------------------------------CTFCVVP 196
           +    ++ +  GC  +                                     C FC VP
Sbjct: 184 KIYRYYVEVVRGCSNYFRPVISGVNGLNCIKCFICRKGDLEKRMYCPANIPPGCGFCSVP 243

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256
           Y  G   SRS+  +V+E R+LI +G   I L   +     G+ L  +    +D  Y    
Sbjct: 244 YMFGPARSRSIDSIVEEIRELIIHGAKRIVLSAPDF-LDYGRDLLVKPKPLTDPCYPEPN 302

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLM----------------PYLHLPVQSGSD 300
           I+ +  L  +     ++ +   +   +                       +H+ +++G  
Sbjct: 303 IEMIEALLSSIFEIEEVRNRNTRIFIENIKACLVNEDVARILGKYLSGTTIHIGLETGDT 362

Query: 301 -RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK--- 356
                 + +  +     + +  +++    +      + G P   +  +R T+  ++K   
Sbjct: 363 KYNSLVLGKPISVEHVYKAVKLLKAY--GLRPYVYLMYGLPLANEKVYRKTLKTINKLSS 420

Query: 357 IGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFN----DACVGQ 412
           +G  +   +K+ P  GT   ++   +      +R   +   ++++    N     + +G+
Sbjct: 421 LGVEKITLYKFVPLPGTAFQDLKPDI------KRHSRIINLIKKKVEKHNLMSKKSLIGR 474

Query: 413 IIEVLIEKHGKEKGKLVGRSPWLQS--VVLNS--KNHNIGDIIKVRITDVKISTLYGELV 468
            I VL+       GK  G  P      V +         G    V I DV    ++G+ +
Sbjct: 475 KIHVLL---LYNNGKYYGY-PINHGPTVFVKGLTSPRFSGCEALVEIYDVAPRFVWGKFI 530


>gi|56800056|emb|CAI35241.1| CDK5 regulatory subunit associated protein 1-like 1 [Mus musculus]
 gi|56800205|emb|CAI35145.1| CDK5 regulatory subunit associated protein 1-like 1 [Mus musculus]
          Length = 106

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 31/87 (35%), Positives = 52/87 (59%), Gaps = 1/87 (1%)

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
             ++++++D ++   P I I++D I GFPGETD DF+ T+ LV++  +   F  ++ PR 
Sbjct: 1   VADFKRVVDFLKEKVPGITIATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRP 60

Query: 372 GTPGSNMLEQVDENVKAERLLCLQKKL 398
           GTP +   EQV  +VK +R   L +  
Sbjct: 61  GTPAAK-AEQVPAHVKKQRTKDLSRVF 86


>gi|222055382|ref|YP_002537744.1| hopanoid biosynthesis associated radical SAM protein HpnJ
           [Geobacter sp. FRC-32]
 gi|221564671|gb|ACM20643.1| hopanoid biosynthesis associated radical SAM protein HpnJ
           [Geobacter sp. FRC-32]
          Length = 476

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 58/346 (16%), Positives = 124/346 (35%), Gaps = 53/346 (15%)

Query: 63  DLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEE-ILRRS 121
           D++V+ T         +    +   +             + V+ G       EE +   +
Sbjct: 70  DMVVMYTSTPTLAIDVETARRIKAQK----------PSTVTVLTGPHVSVLPEESLKFAA 119

Query: 122 PIVNVVVGPQTYYRLPELLER-----------ARFGKRVVDTDYSVEDKFERLSIVDGGY 170
             V++V   +  Y   EL E               GK +   D    +  + L      Y
Sbjct: 120 GAVDLVCRGEFDYSTKELCEGRAWQEVDGITFIMDGKIISTPDRPPIEDLDALPFASQVY 179

Query: 171 NRKRGVTAFLTI-----------QEGCDKFCTFCVVP--YTRGIEISRSLSQVVDEARKL 217
            R   V  ++               GC   C +C+ P  ++      RS   V  E + +
Sbjct: 180 MRDLPVNEYVIPHFKHPYVSIYSSRGCPSKCIYCLWPQTFSGRAMRVRSAENVYQEVKWI 239

Query: 218 IDN--GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSD 275
           ++N  GV EI+       A R            +   +++E    + + +T +   +   
Sbjct: 240 VENVPGVKEISFDDDTFTANR------------EHARAVAEKLKPLGISWTINARANCDY 287

Query: 276 CLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDF 335
             ++   D    + ++ +  ++G+++ILK++ +  T  +  +     + +   +++   F
Sbjct: 288 ETLRIMRDAG--LRHVVVGFETGNEQILKNIKKGVTKAQAIEFTRNCKKL--GLSVHGAF 343

Query: 336 IVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I+G PGET +  R T++    +      +   SP  GT   ++ +Q
Sbjct: 344 IMGLPGETRETIRETIEYAKALDLNSIQASLASPYPGTEFYDLCKQ 389


>gi|150007983|ref|YP_001302726.1| Fe-S oxidoreductase [Parabacteroides distasonis ATCC 8503]
 gi|149936407|gb|ABR43104.1| Fe-S oxidoreductase [Parabacteroides distasonis ATCC 8503]
          Length = 485

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 73/345 (21%), Positives = 117/345 (33%), Gaps = 52/345 (15%)

Query: 64  LIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPI 123
           L VL+T      + +   +F G+++ L            VV+ G    A  EE L  S  
Sbjct: 80  LFVLDTST---PSIKSDVAFAGKLKAL-------YPHSFVVLVGTHPSACAEETLGYSNA 129

Query: 124 VNVVVGPQTYYRLPELLERARFGK---RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFL 180
           V+ V   +    + EL      GK    V    +    +F R + +    N      A  
Sbjct: 130 VDAVAIGEYDCIVNELANVLDAGKDLREVRGLCFWDGKEFVRTAPMPPMKNLDDLPFASQ 189

Query: 181 TIQE-----------------------GCDKFCTFCVVPYTRGIE--ISRSLSQVVDEAR 215
            I+E                       GC   C FCV P T       +RS   VV E  
Sbjct: 190 FIKEHLNERDYFFAAATYPSIQIFTGRGCPFRCNFCVYPQTMHGHAFRARSAENVVAEFE 249

Query: 216 KLIDN--GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
            +  N   V E+ +      A         K    D+   L E K   RL++  +   D+
Sbjct: 250 YIAANFPDVKEVVIEDDTFTA--------NKKRVLDICRLLVEKKLNKRLKWLCNARVDL 301

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
               + A          +   ++SGS +IL ++ +      + Q +   +     + I +
Sbjct: 302 DLETMLAMKKAG--CRLIIPGIESGSQQILDNIKKGTKVEYFYQYVANAKKA--GLLIHA 357

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
            ++VG  GET +    T+ L  ++    A  F   P  GT     
Sbjct: 358 CYMVGNQGETRETMEETLRLALRLNTDTAQFFPLIPYPGTEAYQW 402


>gi|224538132|ref|ZP_03678671.1| hypothetical protein BACCELL_03023 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224520260|gb|EEF89365.1| hypothetical protein BACCELL_03023 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 485

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 61/338 (18%), Positives = 113/338 (33%), Gaps = 46/338 (13%)

Query: 71  HIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGP 130
            + + +   + S +   + +K    K      + + G    A  EE L  S  V+ +   
Sbjct: 81  FVLDTSTPSIKSDVDFAKKIKQLYPKS----FITLVGTHPTACAEETLSYSSAVDAIAIG 136

Query: 131 QTYYRLPELLERARFGKRVV--------------------------DTDYSVEDKFERLS 164
           +    + +L +    G+ +                           D  Y+ +   E L+
Sbjct: 137 EYDCIIKDLADALEKGENIYTVRGLCLRSDNGYVRTAIMPPMKNLDDLPYAAKFIKEYLN 196

Query: 165 IVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE--ISRSLSQVVDEARKLID--N 220
             D  +      +  +    GC   C FCV P T       SRS   VV E   + +   
Sbjct: 197 EKDYFFAAATYPSIQIFTGRGCPFRCNFCVYPQTMHGHAFRSRSAENVVGEFEYIANNFQ 256

Query: 221 GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKA 280
            V E+ +      A         K    ++   L E     RL++  +   D+    +KA
Sbjct: 257 DVKEVVIEDDTFTA--------NKKRVMEICRLLVEKGVNKRLKWLCNARVDLDYETMKA 308

Query: 281 HGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFP 340
                     +   ++SGS +IL ++ +     ++   +   +     + I + ++VG  
Sbjct: 309 MKKAG--CRLIIPGIESGSQQILDNIKKGTKVEQFYSYVSNAKKA--GLLIHACYMVGNN 364

Query: 341 GETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           GET +    T+ L  K+    A  F   P  GT     
Sbjct: 365 GETKETMNETLRLALKLNTDTAQFFPLIPYPGTEAYEW 402


>gi|298376665|ref|ZP_06986620.1| Fe-S oxidoreductase [Bacteroides sp. 3_1_19]
 gi|298266543|gb|EFI08201.1| Fe-S oxidoreductase [Bacteroides sp. 3_1_19]
          Length = 485

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 73/345 (21%), Positives = 117/345 (33%), Gaps = 52/345 (15%)

Query: 64  LIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPI 123
           L VL+T      + +   +F G+++ L            VV+ G    A  EE L  S  
Sbjct: 80  LFVLDTST---PSIKSDVAFAGKLKAL-------YPHSFVVLVGTHPSACAEETLGYSNA 129

Query: 124 VNVVVGPQTYYRLPELLERARFGK---RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFL 180
           V+ V   +    + EL      GK    V    +    +F R + +    N      A  
Sbjct: 130 VDAVAIGEYDCIVNELANVLDAGKDLREVRGLCFWDGKEFVRTAPMPPMKNLDDLPFASQ 189

Query: 181 TIQE-----------------------GCDKFCTFCVVPYTRGIE--ISRSLSQVVDEAR 215
            I+E                       GC   C FCV P T       +RS   VV E  
Sbjct: 190 FIKEHLNERDYFFAAATYPSIQIFTGRGCPFRCNFCVYPQTMHGHAFRARSAENVVAEFE 249

Query: 216 KLIDN--GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
            +  N   V E+ +      A         K    D+   L E K   RL++  +   D+
Sbjct: 250 YIAANFPDVKEVVIEDDTFTA--------NKKRVLDICRLLVEKKLNKRLKWLCNARVDL 301

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
               + A          +   ++SGS +IL ++ +      + Q +   +     + I +
Sbjct: 302 DLETMLAMKKAG--CRLIIPGIESGSQQILDNIKKGTKVEYFYQYVANAKKA--GLLIHA 357

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
            ++VG  GET +    T+ L  ++    A  F   P  GT     
Sbjct: 358 CYMVGNQGETRETMEETLRLALRLNTDTAQFFPLIPYPGTEAYQW 402


>gi|254696400|ref|ZP_05158228.1| RNA modification protein [Brucella abortus bv. 2 str. 86/8/59]
          Length = 78

 Score =  102 bits (254), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 36/71 (50%), Positives = 49/71 (69%)

Query: 9  GVAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLN 68
           +   ++Q        ++ FVK+YGCQMNVYDS RM D   ++GY   ++ DDADL++LN
Sbjct: 7  QIEPAMAQETSPRANTRKVFVKTYGCQMNVYDSQRMADSLAAEGYVATDTPDDADLVLLN 66

Query: 69 TCHIREKAAEK 79
          TCHIREKA+EK
Sbjct: 67 TCHIREKASEK 77


>gi|303243020|ref|ZP_07329473.1| Radical SAM domain protein [Acetivibrio cellulolyticus CD2]
 gi|302589439|gb|EFL59234.1| Radical SAM domain protein [Acetivibrio cellulolyticus CD2]
          Length = 436

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 60/323 (18%), Positives = 120/323 (37%), Gaps = 33/323 (10%)

Query: 54  ERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAE 113
           E V+    AD+I ++           +   L   +  K           VV+ G +A   
Sbjct: 50  EDVDFETGADIIAISGMG------HAIIRSLDIAKEFKKRGK------TVVMGGYMASLM 97

Query: 114 GEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRK 173
            +E  +    V  ++G       P+L+            +  +E+    L   +    ++
Sbjct: 98  PKEAKKYCDSV--IIG-DGEIAFPKLISDYENDNLQEFYNIPLENLSYPLPKYEIFKGKR 154

Query: 174 RGVTAFLTIQEGCDKFCTFCVV-PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNV 232
            G    +    GC   C+FC V    +   + R +S+V+ + + +   G  +  LL  N+
Sbjct: 155 IGNFLPVQAGRGCPNSCSFCSVYCLYKNHYMRREISEVIRDIKYIKKLGYKKFLLLDDNI 214

Query: 233 NAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDC-LIKAHGDLDVLMPYL 291
            + R             LL   +EI+ L     +        D  ++KA      +   L
Sbjct: 215 LSDREY-----------LLKLCAEIEKLNMTWLSQCQISIADDEKVLKAVAKSGCI--SL 261

Query: 292 HLPVQSGSDRILKSMNRRH-TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
              ++S S   L +M++       Y++ + +I++    I +S++ +VG  G+T +  R T
Sbjct: 262 SFGIESISQESLNTMHKSWAKVSRYKEQMRKIQAA--GIDVSTEMVVGADGDTVESIRNT 319

Query: 351 MDLVDKIGYAQAFSFKYSPRLGT 373
            D + +        +  +P  GT
Sbjct: 320 ADFITENKITVPRFYILTPIPGT 342


>gi|14601848|ref|NP_148389.1| hypothetical protein APE_2109 [Aeropyrum pernix K1]
 gi|5105808|dbj|BAA81120.1| conserved hypothetical protein [Aeropyrum pernix K1]
          Length = 447

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 54/230 (23%), Positives = 88/230 (38%), Gaps = 12/230 (5%)

Query: 159 KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY-TRGIEISRSLSQVVDEARKL 217
           K  RL      Y R  G+   + I  GC   C FC VP+  +     RS+  V   A   
Sbjct: 140 KLARLDDYSPHYPRL-GLFPPIEIMRGCSYRCMFCQVPWEFKSQVRFRSVESVAAAAADY 198

Query: 218 IDNGVCEITLLGQNVNAWRGKGL-DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD--MS 274
           +  G  EI  +     A+  + L         +LL  +  + G   L    S  R   ++
Sbjct: 199 VAAGKSEIRFVAPIGFAYGSEDLRTPNPAAVEELLSRVRAVGGKPYLGSFPSETRPEFVT 258

Query: 275 DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSD 334
             +++    L      + + +QSGSD +L+ + R H   E  +      ++        D
Sbjct: 259 PEILRVVRRL-AYNRRISIGLQSGSDMLLERVGRGHGVEEAVRAAGL--AIEYGFTPVVD 315

Query: 335 FIVGFPGETDDDFRAT---MDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
            I G PGE+ +D   T   M  +  +G A+     + P  GTP +    +
Sbjct: 316 IIFGMPGESYEDVVETVNAMYRLSSMG-ARLRLHHFLPLPGTPLARSPPK 364


>gi|207092915|ref|ZP_03240702.1| hypothetical protein HpylHP_08783 [Helicobacter pylori
           HPKX_438_AG0C1]
          Length = 120

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 52/121 (42%), Gaps = 8/121 (6%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++  + S GC  N+ DS  M        Y   N    AD+I++NTC   E A ++    +
Sbjct: 7   KQLCLISLGCSKNLVDSEVMLGKL--YNYTLTNDTKSADVILINTCGFIESAKQESVQTI 64

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
                 K          +++ +GC+++   +EI    P V++  G   Y ++  L+ + +
Sbjct: 65  LNAAKDKKE------GAILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDILIAKKQ 118

Query: 145 F 145
            
Sbjct: 119 N 119


>gi|46200709|ref|ZP_00056585.2| COG1032: Fe-S oxidoreductase [Magnetospirillum magnetotacticum
           MS-1]
          Length = 465

 Score =  101 bits (252), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 45/216 (20%), Positives = 82/216 (37%), Gaps = 7/216 (3%)

Query: 161 ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI-EISRSLSQVVDEARKLID 219
           E+    D  Y    G +A +    GC   CTFC      G      S+  +V+    L  
Sbjct: 165 EKYIAHDYSYGGLYGRSAPIWFTRGCPFACTFCSAYLITGKKVRHHSMDYMVEWIDHLYH 224

Query: 220 N-GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLI 278
             G+ +   +   +  +        + T  DL       + +       +    + D L+
Sbjct: 225 QYGIRQFAFIDDGLTVFPDIPKQFCR-TIIDLRRKGHWAEPIYFTSPNGTRMEKLDDELL 283

Query: 279 KAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVG 338
           +   +       L +  +SGS R+LK + +         ++ RI++    + +   FI G
Sbjct: 284 RLMKEAG--WQGLTIAPESGSRRVLKQIKKSLDPDIVPDVVRRIKAA--GLGVRGFFIFG 339

Query: 339 FPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
           FPGET +D   T+ L+ +  +      ++ P  GTP
Sbjct: 340 FPGETREDIDETIGLIRRCDFDTFNIGRFLPIPGTP 375


>gi|94969346|ref|YP_591394.1| radical SAM family Fe-S protein [Candidatus Koribacter versatilis
           Ellin345]
 gi|94551396|gb|ABF41320.1| Fe-S protein, radical SAM family [Candidatus Koribacter versatilis
           Ellin345]
          Length = 501

 Score =  101 bits (252), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 61/317 (19%), Positives = 101/317 (31%), Gaps = 43/317 (13%)

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE------- 141
            +  +      ++ +   G       E  L   P ++ +V  +  Y + E          
Sbjct: 88  KIAKAMKTANPNVKIAFVGPHVTTLPERSLAEGPEIDFIVRREFDYAVVEYANGKPLNEI 147

Query: 142 -----RARFGKRVVDTDYSVEDKFERLSIVDGGYNR----KRGVTAFLT-------IQEG 185
                R   GK V + D       + +  V   Y R    KR    FL           G
Sbjct: 148 TGVSYRGADGKVVHNPDRPPVSNLDEMPDVIDVYKRDLDVKRYNVPFLLHPYIALYTTRG 207

Query: 186 CDKFCTFCVVPYTRGIE--ISRSLSQVVDEARKLIDN--GVCEITLLGQNVNAWRGKGLD 241
           C   CTFC+ P T        RS   V  E ++ ++    V E        N        
Sbjct: 208 CPAQCTFCLWPQTLSGHPWRKRSSDAVASEMKRAMELFPWVREFFFDDDTFNIQ------ 261

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
             K    +L   L  +     + ++ +         +KA  +       L +  +SG  +
Sbjct: 262 --KARTIELCEKLKPLG----MTWSCTSRVTTDYETLKAMKEAG--CRLLIVGYESGDPQ 313

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
           ILK++ +  T    R        +   + +  DFI+G PGET +  R TMD   ++    
Sbjct: 314 ILKNIKKGATVERARAFTKDCHKL--GLKVHGDFILGLPGETKETIRRTMDFAKELDVET 371

Query: 362 AFSFKYSPRLGTPGSNM 378
                     GT   + 
Sbjct: 372 IQVSIAHAYPGTELYDY 388


>gi|291279198|ref|YP_003496033.1| hypothetical protein DEFDS_0799 [Deferribacter desulfuricans SSM1]
 gi|290753900|dbj|BAI80277.1| conserved hypothetical protein [Deferribacter desulfuricans SSM1]
          Length = 391

 Score =  101 bits (251), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 62/375 (16%), Positives = 123/375 (32%), Gaps = 39/375 (10%)

Query: 37  NVYDSLRMEDMFFSQG---YERVNSMDDADLIVLNT---CHIREKAAEKVYSFLGRIRNL 90
           N Y    +   F       YE +++   +   + N+   C     +  K + F       
Sbjct: 11  NKYSIRAIAASFEKYFDFPYEIISNESASQKQIKNSVIFCSF--NSLNKDFYF------- 61

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
                K     +++  G    A+ +E L     V V  G      +   L      +   
Sbjct: 62  -KLSKKLIDKNVLICGGPHPSAKSDECLNYFHSVCVGEGEIAVKEIVNDLLENSLKRIYR 120

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP-YTRGIEISRSLSQ 209
            T  +  ++F         Y +K  +   + I  GC   C +C  P   +G    R++  
Sbjct: 121 QTISTNLNEF-------SSYPKKHHIFGPIEITRGCLFNCHYCQTPKLFKGKIRHRNIES 173

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSH 269
           +  +      N   +   +  +                 +L  ++  I       +  S 
Sbjct: 174 IAIDVDFAYKNKKTDFRFITPDAG-IYNYKNGINLQAIEELFKTIKSITKNNGRIFFGSF 232

Query: 270 PRDMSDCLIKAHGDLDVLMPYL------HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           P +++      + DL  LM +        + +Q+ S+R+LK +NR     +  + I+   
Sbjct: 233 PSELN--PFHVNEDLIKLMNHYCSNKKVVIGLQTASERLLKIINRPTDLIQVEKTINLFL 290

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG-YAQAFSFKYSPRLGTPGSNMLEQV 382
                  +  DFI G P ETD D   ++  ++K     +  +  + P  G   S    + 
Sbjct: 291 KY--GFGVDVDFIFGLPDETDKDIEQSIKWIEKWESKVRVHAHYFMPLPG---SFFENKT 345

Query: 383 DENVKAERLLCLQKK 397
              +  + L  L+  
Sbjct: 346 PTPISDKSLKKLKSL 360


>gi|331011330|gb|EGH91386.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Pseudomonas
           syringae pv. tabaci ATCC 11528]
          Length = 89

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 41/93 (44%), Positives = 61/93 (65%), Gaps = 5/93 (5%)

Query: 23  VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
           + ++ +++++GCQMN YDS RM D+    Q  E     +DAD+I+LNTC IRE+A ++VY
Sbjct: 1   MAKKLYIETHGCQMNEYDSSRMVDLLGEHQALEVTARAEDADVILLNTCSIRERAQDRVY 60

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG 114
           S LGR R LK +      ++++ V GCVA  EG
Sbjct: 61  SQLGRWRELKLA----NPEMVIAVGGCVASQEG 89


>gi|222527298|ref|YP_002571769.1| Radical SAM domain-containing protein [Chloroflexus sp. Y-400-fl]
 gi|222451177|gb|ACM55443.1| Radical SAM domain protein [Chloroflexus sp. Y-400-fl]
          Length = 578

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 50/244 (20%), Positives = 85/244 (34%), Gaps = 22/244 (9%)

Query: 142 RARFGKRVVDTDYSVEDKFERLSIV--------DGGYNRKRGVTAFLTIQEGCDKFCTFC 193
           R   G+  ++ D    +  + L I                 G   F+    GC   C +C
Sbjct: 251 RDEHGEVRINPDRPFIEDLDTLPIPLHDQLPWQRYKVPIVGGPYTFVLTSRGCPAGCRYC 310

Query: 194 VVPYTR-GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLY 252
           +   T       RS   V+ E   L + G+  I                 +K    DL +
Sbjct: 311 IKHVTYQSSVRHRSPHHVLQEMVMLKEMGMHHIHFEADLFTV--------KKEFVYDLCH 362

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
           ++ + +GL       S    + +  ++        M  +   ++SGS+ +LK   +  T 
Sbjct: 363 TIIK-EGLKLRWSCNSRVDFVDEDELRLMRKAGCFM--IAWGLESGSEEVLKRARKGTTV 419

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
               + I    S R  I     FI+G PGET +  + T+ L  ++    A     +P  G
Sbjct: 420 KRIEETIAA--SHRAGIMNWGYFIIGLPGETVETIQQTIALSKRLPLDIALFHIATPYPG 477

Query: 373 TPGS 376
           TP  
Sbjct: 478 TPFY 481


>gi|301309927|ref|ZP_07215866.1| Fe-S oxidoreductase [Bacteroides sp. 20_3]
 gi|300831501|gb|EFK62132.1| Fe-S oxidoreductase [Bacteroides sp. 20_3]
          Length = 485

 Score =  100 bits (250), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 73/345 (21%), Positives = 117/345 (33%), Gaps = 52/345 (15%)

Query: 64  LIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPI 123
           L VL+T      + +   +F G+++ L            VV+ G    A  EE L  S  
Sbjct: 80  LFVLDTST---PSIKSDVAFAGKLKAL-------YPHSFVVLVGTHPSACAEETLGYSNA 129

Query: 124 VNVVVGPQTYYRLPELLERARFGK---RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFL 180
           V+ V   +    + EL      GK    V    +    +F R + +    N      A  
Sbjct: 130 VDAVAIGEYDCIVNELANVLDAGKDLREVRGLCFWDGKEFVRTAHMPPMKNLDDLPFASQ 189

Query: 181 TIQE-----------------------GCDKFCTFCVVPYTRGIE--ISRSLSQVVDEAR 215
            I+E                       GC   C FCV P T       +RS   VV E  
Sbjct: 190 FIKEHLNERDYFFAAATYPSIQIFTGRGCPFRCNFCVYPQTMHGHAFRARSAENVVAEFE 249

Query: 216 KLIDN--GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
            +  N   V E+ +      A         K    D+   L E K   RL++  +   D+
Sbjct: 250 YIAANFPDVKEVVIEDDTFTA--------NKKRVLDICRLLVEKKLNKRLKWLCNARVDL 301

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
               + A          +   ++SGS +IL ++ +      + Q +   +     + I +
Sbjct: 302 DLETMLAMKKAG--CRLIIPGIESGSQQILDNIKKGTKVEYFYQYVANAKKA--GLLIHA 357

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
            ++VG  GET +    T+ L  ++    A  F   P  GT     
Sbjct: 358 CYMVGNQGETRETMEETLRLALRLNTDTAQFFPLIPYPGTEAYQW 402


>gi|163849304|ref|YP_001637348.1| radical SAM domain-containing protein [Chloroflexus aurantiacus
           J-10-fl]
 gi|163670593|gb|ABY36959.1| Radical SAM domain protein [Chloroflexus aurantiacus J-10-fl]
          Length = 583

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 50/244 (20%), Positives = 85/244 (34%), Gaps = 22/244 (9%)

Query: 142 RARFGKRVVDTDYSVEDKFERLSIV--------DGGYNRKRGVTAFLTIQEGCDKFCTFC 193
           R   G+  ++ D    +  + L I                 G   F+    GC   C +C
Sbjct: 256 RDEHGEVRINPDRPFIEDLDTLPIPLHDQLPWQRYKVPIVGGPYTFVLTSRGCPAGCRYC 315

Query: 194 VVPYTR-GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLY 252
           +   T       RS   V+ E   L + G+  I                 +K    DL +
Sbjct: 316 IKHVTYQSSVRHRSPHHVLQEMVMLKEMGMHHIHFEADLFTV--------KKEFVYDLCH 367

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
           ++ + +GL       S    + +  ++        M  +   ++SGS+ +LK   +  T 
Sbjct: 368 TIIK-EGLKLRWSCNSRVDFVDEDELRLMRKAGCFM--IAWGLESGSEEVLKRARKGTTV 424

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
               + I    S R  I     FI+G PGET +  + T+ L  ++    A     +P  G
Sbjct: 425 KRIEETIAA--SHRAGIMNWGYFIIGLPGETVETIQQTIALSKRLPLDIALFHIATPYPG 482

Query: 373 TPGS 376
           TP  
Sbjct: 483 TPFY 486


>gi|91204447|emb|CAJ70947.1| conserved hypothetical protein [Candidatus Kuenenia
           stuttgartiensis]
          Length = 489

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 68/386 (17%), Positives = 130/386 (33%), Gaps = 64/386 (16%)

Query: 46  DMFFSQGYER--VNSMDDA---DLIVLNTCH------IREKAAEKVYSFLGRIRNLKNSR 94
            +   +G+E   V++  D+   D I+  T        + + +   + + +   R LK   
Sbjct: 40  GVLEEKGFEVNLVDAPADSLSIDDIIEKTLTFQPNLIVLDTSTPSIDNDVAVARRLKE-- 97

Query: 95  IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE------------- 141
                   +++ G    A  EE+L +   V+ V   +  Y L +L +             
Sbjct: 98  --TCPSSFIILVGTHVSALPEEVLNKENSVDAVARNEYDYTLHDLAKILSEKGDLKTVRG 155

Query: 142 -RARFGKRVV-DTDYSVEDKFERLSIVDGGYNR---------KRGVTAFLTI--QEGCDK 188
              R G  ++ +      +    L  V   Y              +   +TI    GC  
Sbjct: 156 ISYRNGNEIIHNPGRPYIENLNELPFVSKVYKEFLRIENYFNPNALYPMVTITTSRGCPF 215

Query: 189 FCTFCVVPY--TRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKC 245
            CTFCV P          RS++ VV+E   +  N    +      +            K 
Sbjct: 216 PCTFCVYPQTLMGRGFRQRSINNVVEEMEYITKNFPQAKAVFFEDDTLTV-------NKK 268

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
              +L   +  I+  V + +T +    +    ++           L +  +SGS ++L +
Sbjct: 269 RCKELAECI--IQKKVNISWTANARVGLDYETMRTMKTAG--CRSLCVGFESGSQQVLDN 324

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           M ++ +  E    +   +     + I   F+ G PGET +  + T+ L  ++    A  +
Sbjct: 325 MKKKLSLAEMEAFMANAKKA--GMLIHGCFMAGLPGETKETLQETLQLAKRLNPDTAQFY 382

Query: 366 KYSPRLGTPGSNMLEQVDENVKAERL 391
                 GT             K +RL
Sbjct: 383 PVMVYPGTEAYTWY-------KEKRL 401


>gi|194335071|ref|YP_002016931.1| radical SAM domain-containing protein [Prosthecochloris aestuarii
           DSM 271]
 gi|194312889|gb|ACF47284.1| Radical SAM domain protein [Prosthecochloris aestuarii DSM 271]
          Length = 473

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 68/369 (18%), Positives = 124/369 (33%), Gaps = 45/369 (12%)

Query: 28  FVKSYGCQMNVYDSLRMED-----MFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
           +++S+G  +N+ D           +  S+    +     A +I ++T             
Sbjct: 35  WLRSHGVTLNIADYQLAGGDMGEQLLPSRFASFIEEHSPAPIIGISTMG----------G 84

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            L  +            +  +++ G         ILR  P V+ +   +    L E LE+
Sbjct: 85  MLPVVLMAVEEYKARHPEKTIILGGSGPAGVAAHILRAFPAVDCIFCGEGEAALLEFLEK 144

Query: 143 ARFGKRVVDTDYSVEDKFERLS-------------IVDGGYNRKRGVTAFLTIQEGCDKF 189
                 V    Y   D                         +  R     ++   GC   
Sbjct: 145 NGDPSSVAGVVYREGDSIVENPARKRISDLDVLPVPAYDLIDMDRYAVVNVSTSRGCPYR 204

Query: 190 CTFCVVPYTRGI-EISRSLSQVVDEARKLIDNGVC-EITLLGQNVNAWRGKGLDGEKCTF 247
           C FC  P   G   + RSL  V++E R+L       +I L      A         +   
Sbjct: 205 CAFCESPAFWGKGVVYRSLDNVMNEIRELRTRWAKRQINLCDDTFVA--------RRPRV 256

Query: 248 SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307
            +    +   K   R     +    +   L+K   +       +   V+SGSD +L  ++
Sbjct: 257 EEFCRRVISEKLDFRWECF-ARVDLVDPDLMKLMAEAG--CSGVFFGVESGSDSVLSRID 313

Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA--QAFSF 365
           +R T    R +I +   + P +   + F+ G P ET +DF  ++ L+ + G +  +    
Sbjct: 314 KRFTVARARDVISQAVKIFPHV--YTSFVWGLPFETMEDFYDSILLMTEFGNSGVRVQRP 371

Query: 366 KYSPRLGTP 374
            +S R G P
Sbjct: 372 HFSLRPGAP 380


>gi|118581231|ref|YP_902481.1| radical SAM domain-containing protein [Pelobacter propionicus DSM
           2379]
 gi|118503941|gb|ABL00424.1| Radical SAM domain protein [Pelobacter propionicus DSM 2379]
          Length = 476

 Score =  100 bits (248), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 56/311 (18%), Positives = 116/311 (37%), Gaps = 37/311 (11%)

Query: 92  NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPI-VNVVVGPQTYYRLPELLER-------- 142
               +   D++ V+ G       EE LR     +++V   +  Y   EL E         
Sbjct: 89  RRIKEVKPDVITVLTGPHVTILPEESLRAGKGAIDIVCRGEFDYSTKELCEGRPWDRVDG 148

Query: 143 ---ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTI-----------QEGCDK 188
               R GK V   D  + +  + L  V   Y R   ++ ++               GC  
Sbjct: 149 ISFLRDGKAVHTPDRPMIEDLDALPFVAPVYRRDLPISEYVIPHFKNPYVSIYSSRGCPS 208

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT-F 247
            C +C+ P T   +  R+         +   N   EI  + +N+   R    D +  T  
Sbjct: 209 KCIYCLWPQTFSGQRMRT---------RSARNVYEEIKWITENIPEMRELSFDDDTFTAN 259

Query: 248 SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307
            +    ++ +   + + +T +   +     ++   +    + ++ +  +SG+ +ILK++ 
Sbjct: 260 REHAREVARLIKPLGISWTINARANTDYETLRVMRECG--LRHVVVGFESGNAQILKNIK 317

Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           +  +  +  Q +   + +   ++I   FI+G PGET +    T++   ++      +   
Sbjct: 318 KGVSKEQAIQFVKDCKKL--GLSIHGAFIMGLPGETRETIAETINYAKQLDLNSIQASLA 375

Query: 368 SPRLGTPGSNM 378
           SP  GT    M
Sbjct: 376 SPYPGTEFYTM 386


>gi|255013325|ref|ZP_05285451.1| Fe-S oxidoreductase [Bacteroides sp. 2_1_7]
          Length = 485

 Score =  100 bits (248), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 63/310 (20%), Positives = 103/310 (33%), Gaps = 42/310 (13%)

Query: 99  GDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV-------- 150
               VV+ G    A  EE L  S  V+ V   +    + EL      GK +         
Sbjct: 105 PHSFVVLVGTHPSACAEETLGYSNAVDAVAIGEYDCIVNELANVLDAGKDLREVRGLCFW 164

Query: 151 ------------------DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTF 192
                             D  ++ +   E L+  D  +      +  +    GC   C F
Sbjct: 165 DGKEFVRTAHMPPMKNLDDLPFASQFIKEHLNERDYFFAAATYPSIQIFTGRGCPFRCNF 224

Query: 193 CVVPYTRGIE--ISRSLSQVVDEARKLIDN--GVCEITLLGQNVNAWRGKGLDGEKCTFS 248
           CV P T       +RS   VV E   +  N   V E+ +      A         K    
Sbjct: 225 CVYPQTMHGHAFRARSAENVVAEFEYIAANFPDVKEVVIEDDTFTA--------NKKRVL 276

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
           D+   L E K   RL++  +   D+    + A          +   ++SGS +IL ++ +
Sbjct: 277 DICRLLVEKKLNKRLKWLCNARVDLDLETMLAMKKAG--CRLIIPGIESGSQQILDNIKK 334

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
                 + Q +   +     + I + ++VG  GET +    T+ L  ++    A  F   
Sbjct: 335 GTKVEYFYQYVANAKKA--GLLIHACYMVGNQGETRETMEETLRLALRLNTDTAQFFPLI 392

Query: 369 PRLGTPGSNM 378
           P  GT     
Sbjct: 393 PYPGTEAYQW 402


>gi|303249104|ref|ZP_07335345.1| Radical SAM domain protein [Desulfovibrio fructosovorans JJ]
 gi|302489475|gb|EFL49421.1| Radical SAM domain protein [Desulfovibrio fructosovorans JJ]
          Length = 493

 Score =  100 bits (248), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 60/319 (18%), Positives = 105/319 (32%), Gaps = 50/319 (15%)

Query: 95  IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA----------- 143
            +    +  V+ G  A A  E++L   P     V  + Y      L R            
Sbjct: 100 RRVLPGVFTVLVGPHASALPEDVLTSVPGAVCAVARREYDATVLELARVLESGPATEERL 159

Query: 144 ----------RFGKRVVDTDYSVEDKFERLSIVDGGYNR-----------KRGVTAFLTI 182
                       G  V + D    +   +L  V   Y R            +     L+ 
Sbjct: 160 AKIEGLSFVDESGVAVHNPDRPYIEDLGKLPPVAPVYKRHLDIRRYFNPNAKPPMVTLST 219

Query: 183 QEGCDKFCTFCVVPYT--RGIEISRSLSQVVDEARKLIDN--GVCEITLLGQNVNAWRGK 238
             GC   C+FC+ P T        R +  V+DE    +++  G+  +      + A R +
Sbjct: 220 SRGCPFRCSFCLHPQTLTGRKARYRPIEDVLDEVAWSLEHFPGLRTVFFEDDTLTADRAR 279

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
                K   + ++         +R  ++ +   D++  L+ A G        + +  +S 
Sbjct: 280 C----KAFCAAIMRR------GLRFEWSANSRADLAPDLLAAMGRAG--CGQVCVGFESA 327

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
               L SM +  TA    +     ++    I +   FI GFPG+T +   AT+D   K+ 
Sbjct: 328 DPTALTSMKKGLTAARMERFRADAKAA--GIKVHGCFIFGFPGDTRESIMATIDFAIKLA 385

Query: 359 YAQAFSFKYSPRLGTPGSN 377
              A  +      GT    
Sbjct: 386 PDTAQFYPVMVYPGTEAYA 404


>gi|167465799|ref|ZP_02330888.1| YmcB [Paenibacillus larvae subsp. larvae BRL-230010]
          Length = 125

 Score =  100 bits (248), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 27/71 (38%), Positives = 43/71 (60%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           + + +++YGCQMN +D+  M+ +    GY        AD+I+LNTC IRE A +KV+  L
Sbjct: 50  KHYLIRTYGCQMNEHDTETMKGLLEQMGYRSTEDKYQADVILLNTCAIRENAEDKVFGEL 109

Query: 85  GRIRNLKNSRI 95
           G ++ LK  + 
Sbjct: 110 GHLKTLKTEKP 120


>gi|39995977|ref|NP_951928.1| radical SAM domain/B12 binding domain-containing protein [Geobacter
           sulfurreducens PCA]
 gi|39982742|gb|AAR34201.1| radical SAM domain protein/B12 binding domain protein [Geobacter
           sulfurreducens PCA]
 gi|298504993|gb|ADI83716.1| cobalamin-binding radical SAM domain iron-sulfur cluster-binding
           oxidoreductase with TPR domain [Geobacter sulfurreducens
           KN400]
          Length = 554

 Score = 99.6 bits (247), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 67/322 (20%), Positives = 115/322 (35%), Gaps = 38/322 (11%)

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
            L +S        L V+ G  A    + IL+  P V+ VV  +    + EL+     G R
Sbjct: 79  RLVSSAKTADPTCLTVLGGPHATHSFDMILQHHPQVDAVVLGEGEETMLELVRTVAEGNR 138

Query: 149 ---------------VVDTDYSVEDKFERLSIVDGGYNRK-----RGVTAFLTIQEGCDK 188
                          +  +  +     + L +    ++       R    F+    GC  
Sbjct: 139 SLAGIPGLAIREGSGISHSSRAPLRNLDDLPVPARYFDNALGCDLRRQLEFVITSRGCPA 198

Query: 189 FCTFCVVPYTRG-IEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCT 246
            C FC  P   G     RS   +VDE R + D  G+   +L      A   + ++     
Sbjct: 199 SCRFCSSPRFWGTSLRLRSPRAMVDEIRYIRDRFGLLSFSLRDDTFTARADRVIE----- 253

Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306
                  L   +GL  L    S    + + ++           Y+   V+SGS+RIL  +
Sbjct: 254 ----FCRLLTAEGLHILWSCQSRVNCVDEEMLLWMRRAG--CEYVQYGVESGSERILARL 307

Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
            +R T  + ++      + R  + +S   I G PGE ++D RAT+ L++ I         
Sbjct: 308 GKRITPDQVQRAAAA--TRRAGMDLSIYLIAGVPGEDEEDLRATLRLIEDIRPHDGHVAP 365

Query: 367 YSPRLGTPG---SNMLEQVDEN 385
            +   GT     +    +V  +
Sbjct: 366 LAYYPGTALFAEAVREGRVPAD 387


>gi|16331878|ref|NP_442606.1| P-methylase [Synechocystis sp. PCC 6803]
 gi|6686107|sp|Q55914|Y309_SYNY3 RecName: Full=Uncharacterized methyltransferase slr0309
 gi|1001797|dbj|BAA10677.1| P-methylase [Synechocystis sp. PCC 6803]
          Length = 473

 Score = 99.6 bits (247), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 63/333 (18%), Positives = 117/333 (35%), Gaps = 36/333 (10%)

Query: 54  ERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAE 113
           E VN   +AD+IVL+       A E         +  K          + +  G      
Sbjct: 60  ETVNLDSEADVIVLS--FFSGFAPEAYRLATEYRKRGK----------ITIAGGPHVTFA 107

Query: 114 GEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKF-ERLSIVDGGYNR 172
            EE LR    + +  G   + ++ + +E+    +R +     + +    R  ++   Y  
Sbjct: 108 PEEALRFVDSIVIGEGESVWEQIFQDIEQNTLQQRYIGEAIPLTNIPTPRYDLLPPQYFI 167

Query: 173 KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNG---VCEITLLG 229
           +R V A      GC   C+FC VP       +R +  V+++ R            +    
Sbjct: 168 RRVVQA----TRGCPFTCSFCTVPVLNPGFRTRPVEAVLNDIRYNKFKWWWQRKTVWFWD 223

Query: 230 QNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMP 289
            N+ A         +    +LL  +  I          S      D L+    D   +  
Sbjct: 224 DNLTA--------NRPYIKELLRQM--IPLRKWWLTQASMDITKDDELLDLMRDSGCI-- 271

Query: 290 YLHLPVQSGSDRILKSMNRR-HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFR 348
            +   ++S     L+   +R +   EY+  I ++      I + + FI G  G+T +  R
Sbjct: 272 GIFFGIESFGQESLEDAGKRQNKVAEYQGKIKKLHDR--GIGVMAGFISGLDGDTPESIR 329

Query: 349 ATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLE 380
              + +++IG    F    +P  GT     M++
Sbjct: 330 DMANQLEEIGVDVPFLSILTPFKGTRSYSKMMD 362


>gi|94263046|ref|ZP_01286865.1| Cobalamin B12-binding:Radical SAM [delta proteobacterium MLMS-1]
 gi|93456589|gb|EAT06697.1| Cobalamin B12-binding:Radical SAM [delta proteobacterium MLMS-1]
          Length = 497

 Score = 99.6 bits (247), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 42/211 (19%), Positives = 85/211 (40%), Gaps = 15/211 (7%)

Query: 166 VDGGYNRKRGVTAFLTIQEGCDKFCTFC--VVPYTRGIEISRSLSQVVDEARKLIDNGVC 223
           V      KR   A +    GC++ C +C  +    +     RS+  V+ E R  +  G  
Sbjct: 212 VPPPATYKRRPVAVIITSRGCNRRCLYCFQIDKSRQSGIRYRSVDNVLAEIRACLAEGYR 271

Query: 224 EITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGD 283
           EI  +   +     + L        +L   + + +GL    + ++    + + L++A  +
Sbjct: 272 EIKFIDDTLADDYERAL--------ELARRI-KQEGLDFTWFASACVNQVDEQLLRAFKE 322

Query: 284 LDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGET 343
                  +   V+SG  + L ++ +  T  + R+ +   + V   I + + FI G PG+T
Sbjct: 323 AG--CWAILFGVESGVQKDLNTIRKGITIAQIRKAVAAAKKV--GITVYTPFIFGIPGQT 378

Query: 344 DDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
            +D   ++D   ++    A     +P  GT 
Sbjct: 379 YEDGLKSIDFALELDPDIANFHALTPFPGTE 409


>gi|94270734|ref|ZP_01291811.1| Cobalamin B12-binding:Radical SAM [delta proteobacterium MLMS-1]
 gi|93450685|gb|EAT01775.1| Cobalamin B12-binding:Radical SAM [delta proteobacterium MLMS-1]
          Length = 497

 Score = 99.6 bits (247), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 42/211 (19%), Positives = 85/211 (40%), Gaps = 15/211 (7%)

Query: 166 VDGGYNRKRGVTAFLTIQEGCDKFCTFC--VVPYTRGIEISRSLSQVVDEARKLIDNGVC 223
           V      KR   A +    GC++ C +C  +    +     RS+  V+ E R  +  G  
Sbjct: 212 VPPPATYKRRPVAVIITSRGCNRRCLYCFQIDKSRQSGIRYRSVDNVLAEIRACLAEGYR 271

Query: 224 EITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGD 283
           EI  +   +     + L        +L   + + +GL    + ++    + + L++A  +
Sbjct: 272 EIKFIDDTLADDYERAL--------ELARRI-KQEGLDFTWFASACVNQVDEQLLRAFKE 322

Query: 284 LDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGET 343
                  +   V+SG  + L ++ +  T  + R+ +   + V   I + + FI G PG+T
Sbjct: 323 AG--CWAILFGVESGVQKDLNTIRKGITIAQIRKAVAAAKKV--GITVYTPFIFGIPGQT 378

Query: 344 DDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
            +D   ++D   ++    A     +P  GT 
Sbjct: 379 YEDGLKSIDFALELDPDIANFHALTPFPGTE 409


>gi|268325259|emb|CBH38847.1| conserved hypothetical protein containing B12 binding domain,
           radical SAM superfamily [uncultured archaeon]
          Length = 440

 Score = 99.6 bits (247), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 55/319 (17%), Positives = 110/319 (34%), Gaps = 46/319 (14%)

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
               L     +   +  +   G  A    + IL+    V+ ++         +L+     
Sbjct: 77  EALRLAKMVKEHNPNAHINFGGYHATPLADVILKNREYVDSIIRGDGEIPFRDLVNALLN 136

Query: 146 G---------------KRVVDTDYSVED----------------KFERLSIVDGGYNRKR 174
           G               + V + D  + D                 F            K 
Sbjct: 137 GTDLSKVGSLTYRKGMRIVSNPDAPLPDLDSLPYPARDLLPMEKCFSHFKNSFFYKIHKM 196

Query: 175 GVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLID-NGVCEITLLGQNVN 233
               ++    GC   C FC +        +R   ++VDE + +++      I L+G N+N
Sbjct: 197 SRMVYVNANRGCPNDCIFCSI--FNKKWRTRDPQKIVDEFKYVVEVYNADSIYLVGDNLN 254

Query: 234 AWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHL 293
                    +   F  L   +   K  +R     ++ +D++  LI            +  
Sbjct: 255 --------LDSKWFLTLCDEILTQKLDIRWVAVGANAQDINYRLINKMAKSG--CVSISY 304

Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
             +SGS ++L SMN+ ++A +++  ++ I +   ++ I + FI+G PGE +     T+  
Sbjct: 305 GFESGSQKMLDSMNKNYSAKKFKTTVN-ITNNM-NMHIGASFILGAPGENEATLNKTLKF 362

Query: 354 VDKIGYAQAFSFKYSPRLG 372
           + K  + +  S    P  G
Sbjct: 363 IRKSDFERVSSSSLVPLPG 381


>gi|118581738|ref|YP_902988.1| glycosyl transferase family protein [Pelobacter propionicus DSM
           2379]
 gi|118504448|gb|ABL00931.1| glycosyl transferase, family 2 [Pelobacter propionicus DSM 2379]
          Length = 1250

 Score = 99.3 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 62/313 (19%), Positives = 106/313 (33%), Gaps = 34/313 (10%)

Query: 65  IVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIV 124
           I  NT   R+    +++  L  +R       K      ++  G  A    E I    P V
Sbjct: 279 IYTNTICFRDS--LRMFYLLEELRQRGFWNGK------IIAGGPHASVCPETI---PPFV 327

Query: 125 NVVVGPQTYYRLPELLERARFGKRVV--------DTDYSVEDKFERLSIVDGGYNRKRGV 176
           + +V  +  Y + +++      + V         +      D F  L    GG       
Sbjct: 328 DHIVIGEGEYAVRDIVSGKVTERIVHYPSIENLDELPMPAWDYFSELPYNWGGNWLPEAP 387

Query: 177 TAFLTIQEGCDKFCTFCVVPYTRGIEISR-SLSQVVDEARKLIDN-GVCEITLLGQNVNA 234
              +    GC   CTFC V    G   +  S  ++V +   ++ N G   I     N   
Sbjct: 388 VFTMNTSRGCPFSCTFCSVCSIWGKHYTYFSAERIVADIEHVVKNFGARGIYFREDNFTL 447

Query: 235 WRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP 294
            R    D      + L+     I  +   R +          L++       +    +  
Sbjct: 448 KR----DRLIRFCNLLMERNIRIPWVCESRVSNLDR-----DLVELMARAGAV--GFYFG 496

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           V+SGS R+L  M +     + R        +   I  ++  IVG P ET+DD R T  L+
Sbjct: 497 VESGSQRLLDFMKKGINVQQIRNAFLWCHEL--GIKTAASVIVGVPTETEDDLRMTASLL 554

Query: 355 DKIGYAQAFSFKY 367
           ++I     +   +
Sbjct: 555 EEIKPTVTWFNIF 567


>gi|222055404|ref|YP_002537766.1| radical SAM protein [Geobacter sp. FRC-32]
 gi|221564693|gb|ACM20665.1| Radical SAM domain protein [Geobacter sp. FRC-32]
          Length = 554

 Score = 99.3 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 81/368 (22%), Positives = 123/368 (33%), Gaps = 49/368 (13%)

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER------ 142
            L     K      VV  G  A  +  EIL R   V+ VV  +      EL+        
Sbjct: 80  KLAALAKKINPATFVVFGGPHATHQYREILDRHKQVDAVVLGEGEESFLELVATLKDETP 139

Query: 143 --ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT-------------AFLTIQEGCD 187
             A        T   +     R  I D                        F+    GC 
Sbjct: 140 RLAEIKGIAFRTANGIISTTARPPIADLDSVPFPAAYMDNALGVDLHRQLEFIITSRGCP 199

Query: 188 KFCTFCVVPYTRGI-EISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKC 245
             C FC  P   G     RS   +VDE   + +  G+   ++      A +G+       
Sbjct: 200 AACLFCSSPLFWGKSLRLRSPRNMVDEITLIRNRCGLIYFSIRDDTFTADKGR------- 252

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
              +    L + + +  L    S    + + L+ A          +   V+SGS RILK+
Sbjct: 253 -VMEFCRLLRK-EKVFILWNCQSRVSAVDEELLFAMKRAG--CECIQFGVESGSPRILKA 308

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           + +     + R+    +R     + +S   I G   E D D  AT+ LV+ I    A   
Sbjct: 309 LGKGINTEQVRKASALVRKA--GMNLSIYLITGVKNEVDADTDATIKLVEAIQ---AHDG 363

Query: 366 KYSPRLGTPGSNMLEQVDENVKA---ERLLCLQKKLREQQVSFNDACVG-QIIEVL--IE 419
           + SP    PG+ +     ++VKA    R     +   E     +DA VG     +L  + 
Sbjct: 364 QVSPLAYYPGTGIF---SKDVKAGVIGR-EIFNEDRHEALYVRDDAFVGSSTQRLLETVA 419

Query: 420 KHGKEKGK 427
           K GK  G 
Sbjct: 420 KVGKGAGY 427


>gi|258591106|emb|CBE67401.1| Radical SAM domain protein precursor [NC10 bacterium 'Dutch
           sediment']
          Length = 453

 Score = 99.3 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 62/263 (23%), Positives = 87/263 (33%), Gaps = 18/263 (6%)

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
            VD        F  L + +  Y    G  A L    GC   C FC++         +   
Sbjct: 170 PVDLTTLPMPAFHLLDLRNYRYEILGGRFALLETTRGCHHRCHFCLLKMYGKGYRKKDPE 229

Query: 209 QVVDEARKLI-DNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
           QVV E   L+ + G      +     A R            DL   L    GL       
Sbjct: 230 QVVHEVTHLVREAGAKTGYFIDLEFTAVRDD--------VRDLCERLVSA-GLPFEWACQ 280

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
           +    +   L+K           +H  V+SGS RIL + N+R T  +  + I   +    
Sbjct: 281 TRADYVDGPLLKLMKRAG--CRLIHFGVESGSPRILAATNKRITLEQIERGIAETKQS-- 336

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ---VDE 384
            I     F+ GFPGET  D  AT+    ++    A     +P +GT    M        E
Sbjct: 337 GIDQLCFFMFGFPGETAGDMEATIAFAKRLSPTYASFHAVTPYMGTKLYEMSGSSELFPE 396

Query: 385 NVKAER-LLCLQKKLREQQVSFN 406
            +  E   L LQ         F 
Sbjct: 397 VLSKEHDPLILQAIANRAFREFY 419


>gi|225874580|ref|YP_002756039.1| radical SAM domain protein [Acidobacterium capsulatum ATCC 51196]
 gi|225791488|gb|ACO31578.1| radical SAM domain protein [Acidobacterium capsulatum ATCC 51196]
          Length = 492

 Score = 98.9 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 62/321 (19%), Positives = 110/321 (34%), Gaps = 44/321 (13%)

Query: 88  RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVV---------VGPQTYYRLPE 138
           + L  +       L +   G       +  L   P+++ V         V       L E
Sbjct: 87  QKLAEAIKAVNPKLRIAFVGPPVTTSPDRALTECPVIDFVCRREFDFSVVEFANGKPLDE 146

Query: 139 LLERA--RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT---------AFLTI--QEG 185
           +L  +  + G+ V + D    +  + L  V   Y R   VT          ++++    G
Sbjct: 147 ILGISYRKNGQIVHNPDRPQVEDLDALPWVTDIYKRDMDVTRYNVPFLLHPYVSLYSTRG 206

Query: 186 CDKFCTFCVVPYTRGIE--ISRSLSQV---VDEARKLIDNGVCEITLLGQNVNAWRGKGL 240
           C   CTFC+ P T        RS   V   +  A++L    V E        N  +    
Sbjct: 207 CPAQCTFCLWPQTLSGHAWRKRSTDDVAAEMAHAKELFP-HVKEFFFDDDTFNIQK---- 261

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300
                  +  +   +++K L  L ++ +         +KA  +       L +  +SG  
Sbjct: 262 -------ARTIELCAKLKPLG-LTWSCTSRVTTDRETLKAMREAG--CRLLIVGYESGDP 311

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
           +ILK++ +  T    R        +   + I  DFI+G PGET +  R T++    +   
Sbjct: 312 QILKNIKKGATVERARDFTRDCHDL--GLTIHGDFILGLPGETKESIRNTINFAKSLDVE 369

Query: 361 QAFSFKYSPRLGTPGSNMLEQ 381
                      GT   +  +Q
Sbjct: 370 TIQVSIAHAYPGTEFYDFAKQ 390


>gi|269125534|ref|YP_003298904.1| Radical SAM domain-containing protein [Thermomonospora curvata DSM
           43183]
 gi|268310492|gb|ACY96866.1| Radical SAM domain protein [Thermomonospora curvata DSM 43183]
          Length = 451

 Score = 98.9 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 53/263 (20%), Positives = 90/263 (34%), Gaps = 19/263 (7%)

Query: 162 RLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG-IEISRSLSQVVDEARKLIDN 220
            L        R R     + I  GC   C FC  P+        RS+  V     +++ +
Sbjct: 157 ELDAYPAFSVRWRRFN-PIEITRGCVYACRFCQTPFMFSAKFRHRSVENVKRHVEQMVAH 215

Query: 221 GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCL--I 278
           G  ++  +     ++     +       +LL +   + G     +  S P ++      +
Sbjct: 216 GRRDVRFITPTSLSYGSGDENVNLEAVEELLAACKSVVGKQGRVFFGSFPSEVRPEHVSV 275

Query: 279 KAHGDLDVLM--PYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFI 336
           +A   +        L +  QSGS R+L++  R H   E R  +     V+    I+ D I
Sbjct: 276 RALRLIKRYCANDNLIIGAQSGSARVLEAAKRGHGVQEVRDAVRI--GVQEGFRINVDMI 333

Query: 337 VGFPGETD---DDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLC 393
            G PGET        A    +  +G A+  +  + P  GTP     E     V  E L  
Sbjct: 334 FGMPGETPADAAASLALARELADLG-ARIHAHTFMPLPGTP---WREATPGRVDPETLRA 389

Query: 394 LQKKLREQQV----SFNDACVGQ 412
           + +      +           GQ
Sbjct: 390 IGELTGRGALYGHWERQQRLAGQ 412


>gi|207109743|ref|ZP_03243905.1| hypothetical protein HpylH_11239 [Helicobacter pylori
           HPKX_438_CA4C1]
          Length = 160

 Score = 98.9 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 35/161 (21%), Positives = 73/161 (45%), Gaps = 3/161 (1%)

Query: 220 NGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIK 279
            G  ++T + Q+ +++      G+K     L+ ++ + + L   R    +P   +  LI 
Sbjct: 2   KGYTDMTFIAQDSSSFLYD--KGQKDGLIQLIRAIDKQQALKSARILYLYPSSTTLELIG 59

Query: 280 AHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGF 339
           A  +  +   Y  +P+Q  SD +LK M R  +   + +++D ++ V+    I S  IVG 
Sbjct: 60  AIENSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKKVKESF-IRSTIIVGH 118

Query: 340 PGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           P E + +F      +D+  + +   F +S    T   ++ +
Sbjct: 119 PEENEGEFEELSAFLDEFQFDRLNIFAFSAEENTHAYSLEK 159


>gi|124516668|gb|EAY58176.1| putative cobalamin B12-binding/Radical SAM family protein
           [Leptospirillum rubarum]
          Length = 626

 Score = 98.9 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 60/359 (16%), Positives = 121/359 (33%), Gaps = 57/359 (15%)

Query: 44  MEDMFFSQGYERVNSMDD-----------ADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92
           +  M   +G++    ++D           AD++ ++T                  ++ K 
Sbjct: 32  LGTMLRDRGWDVKVYIEDVSPVDMTEVLSADIVGISTLTSTAP------------QSYKL 79

Query: 93  SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA--------- 143
           + +     + V++ G       +E L  S  V    G +T + L + ++           
Sbjct: 80  AEVVRNHGIPVIMGGTHVTFCPDEALDFSDYVVRGEGEETLFELLDAMDGKGSFDKILGL 139

Query: 144 ---RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTI--QEGCDKFCTFCVVPYT 198
              + GK+V   D  +++  +   I D          A ++I    GC   CTFC VP  
Sbjct: 140 SFWKSGKKVHTPDRPLKEDLDSNPIPDYSLVEGWNSNAIISIATSRGCPFTCTFCSVPGM 199

Query: 199 RGI-EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257
            G      S+ +V++E R               ++           +    DLL  + E 
Sbjct: 200 YGHGFRMHSIERVIEEIRVNKPQ----YIFFADDL-------FTANRKRTKDLLRRMIE- 247

Query: 258 KGLVRLRYTTSHPRD--MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
           +GL   ++      +      L+    + +     + +  +S + + L   N+R T  + 
Sbjct: 248 EGLT-PQWGAQVRIETAFDPELLSLMKESNCFN--VFVGFESINPKTLDLFNKRQTYEKI 304

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
              I + +     I I   F+VG   +  +    T     + G         +P  G+P
Sbjct: 305 VSSIKKFKEA--GIRIHGMFVVGSDADDKETIYETSRFATEHGLETIQLMILTPLPGSP 361


>gi|206603572|gb|EDZ40052.1| Putative cobalamin B12-binding/Radical SAM family protein
           [Leptospirillum sp. Group II '5-way CG']
          Length = 626

 Score = 98.5 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 60/359 (16%), Positives = 121/359 (33%), Gaps = 57/359 (15%)

Query: 44  MEDMFFSQGYERVNSMDD-----------ADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92
           +  M   +G++    ++D           AD++ ++T                  ++ K 
Sbjct: 32  LGTMLRDRGWDVRVYIEDVSPVDMTEVLSADIVGISTLTSTAP------------QSYKL 79

Query: 93  SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA--------- 143
           + +     + V++ G       +E L  S  V    G +T + L + ++           
Sbjct: 80  AELVRNHGIPVIMGGTHVTFCPDEALDFSDYVVRGEGEETLFELLDAMDGKGSFDKILGL 139

Query: 144 ---RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTI--QEGCDKFCTFCVVPYT 198
              + GK+V   D  +++  +   I D          A ++I    GC   CTFC VP  
Sbjct: 140 SFWKSGKKVHTPDRPLKEDLDSNPIPDYSLVEGWNSNAIISIATSRGCPFTCTFCSVPGM 199

Query: 199 RGI-EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257
            G      S+ +V++E R               ++           +    DLL  + E 
Sbjct: 200 YGHGFRMHSIERVIEEIRVNKPQ----YIFFADDL-------FTANRKRTKDLLRRMIE- 247

Query: 258 KGLVRLRYTTSHPRD--MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
           +GL   ++      +      L+    + +     + +  +S + + L   N+R T  + 
Sbjct: 248 EGLT-PQWGAQVRIETAFDPELLSLMKESNCFN--VFVGFESINPKTLDLFNKRQTYEKI 304

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
              I + +     I I   F+VG   +  +    T     + G         +P  G+P
Sbjct: 305 VSSIKKFKEA--GIRIHGMFVVGSDADDKETIYETSRFATEYGLETIQLMILTPLPGSP 361


>gi|13541841|ref|NP_111529.1| Fe-S oxidoreductase [Thermoplasma volcanium GSS1]
 gi|14325277|dbj|BAB60181.1| hypothetical protein [Thermoplasma volcanium GSS1]
          Length = 540

 Score = 98.5 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 58/297 (19%), Positives = 112/297 (37%), Gaps = 29/297 (9%)

Query: 74  EKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTY 133
           +    K +  LG     K   +K      V++ G  A       L     V+ V+  +  
Sbjct: 120 DSWTSKFFKELGE----KVKSLKLKYGFKVIIGGPAAWQIA---LDIPDWVDAVLDGEAE 172

Query: 134 YRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC 193
              P+L+++   G++V    Y    K E +  +             + I  GC + C FC
Sbjct: 173 IDFPDLVKKIENGEQVPKVTYGRMPKVEEIPTIIKPSRFGE-----VQITRGCPRGCQFC 227

Query: 194 -VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLY 252
            + P T     S  +  ++ E +  ID+G+  I LL  ++  +  K L        +L  
Sbjct: 228 SITPET---FRSIPMDDIIKEVKLNIDHGIRGIELLTDDIMLYGSKKLQVNHEALVNLFT 284

Query: 253 SLSEIKGLVRLRYTTS-----HPRDMSDCLIKAHGDLDVL-MPYLHLPVQSGSDRILKSM 306
           ++ ++ G   + +             +   I    + D        + ++SGS+RI+   
Sbjct: 285 TVKKL-GATHIYFPHISAPGAKSSPKTVQAIAEIAEYDKYTAEAPVVGLESGSERIISKY 343

Query: 307 NR----RHTAYEYRQIIDRIRSVRPD--IAISSDFIVGFPGETDDDFRATMDLVDKI 357
            R      T +++  +I     +  D  I       +G+P ETD+D   ++ LV ++
Sbjct: 344 MRGKPFPWTPHDWGDVIIDATGIMVDNNIHPCYTMTIGYPDETDEDIEESIKLVQRM 400


>gi|328953260|ref|YP_004370594.1| hopanoid biosynthesis associated radical SAM protein HpnJ
           [Desulfobacca acetoxidans DSM 11109]
 gi|328453584|gb|AEB09413.1| hopanoid biosynthesis associated radical SAM protein HpnJ
           [Desulfobacca acetoxidans DSM 11109]
          Length = 501

 Score = 98.5 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 60/320 (18%), Positives = 114/320 (35%), Gaps = 44/320 (13%)

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL---- 139
           L  +R LK +      +L V + G       E+ L    +V+ V   +  Y + E+    
Sbjct: 110 LHTVRRLKEA----NPNLSVGLVGPHVSVRPEDALNDESMVDFVARREFDYTIQEVAAGR 165

Query: 140 -------LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRK-----------RGVTAFLT 181
                  L     G    + D    +  + L  V   Y+R            R     + 
Sbjct: 166 PWKDILGLTYRESGDVCHNPDRPFIEDLDALPWVSEIYHRDLQIERYHIPYLRDPYVSIY 225

Query: 182 IQEGCDKFCTFCVVP--YTRGIEISRSLSQVVDEARKLID-NGVCEITLLGQNVNAWRGK 238
              GC   C++C+ P  +T      RS++ V  E R++++     +      +     G+
Sbjct: 226 TGRGCPSRCSYCLWPQTFTGRRYRVRSVADVTAEVRRILELFPQAQEVFFDDDTFTAHGE 285

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
                      L   L  +K      ++ +     S   +KA  +    +  L +  +SG
Sbjct: 286 -------RAQHLARELRPLK----CVWSATARVTTSYETLKALKEGG--LRLLVVGYESG 332

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           + +ILK++++  T    R+     + +   I I   F+VG PGET    + +M    ++ 
Sbjct: 333 NAQILKNIHKGATPELARRFTRWCKEL--GIQIHGTFMVGLPGETPATLKESMRFACELE 390

Query: 359 YAQAFSFKYSPRLGTPGSNM 378
                    +P  GT   ++
Sbjct: 391 PDTIQVSLATPYPGTEFFDL 410


>gi|218779021|ref|YP_002430339.1| radical SAM domain protein [Desulfatibacillum alkenivorans AK-01]
 gi|218760405|gb|ACL02871.1| Radical SAM domain protein [Desulfatibacillum alkenivorans AK-01]
          Length = 471

 Score = 98.5 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 55/252 (21%), Positives = 92/252 (36%), Gaps = 22/252 (8%)

Query: 128 VGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCD 187
           +G  T    P  +        +   D     ++        G   +R   A      GC 
Sbjct: 158 IGKDTPICRPPAVREDINDPAMPAWDLMPPGQY---PKAPHGAFFRRFPVAPALTSRGCS 214

Query: 188 KFCTFCVVP-YTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKC 245
             C FC VP  T G    R+   V +E   L    GV E  ++  N  A         K 
Sbjct: 215 YGCGFCSVPALTGGKIRFRAPQLVAEELMALKTRFGVQEAQIIDDNFTA--------NKA 266

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDM---SDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
              +   +L  I   V L +T  +   M      LI+A          + L ++SGS ++
Sbjct: 267 HALNTCRAL--INSGVNLPWTCPNGVRMENLDKELIQAMK--GAGCYSVSLGLESGSAKV 322

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           L  M +  +     + ++ +      + ++  FI+G+P ET  D +AT+D    +   +A
Sbjct: 323 LNRMKKGLSLDHVGERVELLAKA--GLEVNGFFILGYPEETRQDMKATLDFAKSLPLTRA 380

Query: 363 FSFKYSPRLGTP 374
               ++P  G P
Sbjct: 381 NFSLFTPLPGCP 392


>gi|148263437|ref|YP_001230143.1| radical SAM domain-containing protein [Geobacter uraniireducens
           Rf4]
 gi|146396937|gb|ABQ25570.1| Radical SAM domain protein [Geobacter uraniireducens Rf4]
          Length = 556

 Score = 98.5 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 68/320 (21%), Positives = 112/320 (35%), Gaps = 42/320 (13%)

Query: 85  GRIRNLKNSR--IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            R  +LK +    K     +VV  G  A  + +EIL R   V+VVV  +      +L+  
Sbjct: 73  NRFESLKLAELAKKINPATIVVFGGPHATHQFQEILARQTEVDVVVMGEGEDTFLDLMNT 132

Query: 143 A-----------------RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGV-----TAFL 180
                             + G  V             +    G ++   GV       F+
Sbjct: 133 VSRKGTSSLGEVKGIAFRKDGVVVSTAPRPPIADLNSIPFPAGYFDGGIGVDIHRQLEFI 192

Query: 181 TIQEGCDKFCTFCVVPYTRGI-EISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGK 238
               GC   C FC  P   G     RS   VVDE R + D  G+   ++        +G+
Sbjct: 193 VTSRGCPAVCVFCSSPLFWGRSLRLRSPRAVVDEIRMIRDRYGLIYFSIRDDTFTVDKGR 252

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
                     +    L E + +  L    S    + + ++            +   V+SG
Sbjct: 253 --------VMEFCRLLQE-EKVHILWNCQSRVNAVDEEMLLVMKRSG--CECIQFGVESG 301

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           S R+LK++ +R T                 I +S   I G   ETD+D +A++ L++ I 
Sbjct: 302 SPRVLKALGKRITTE--EVRRAAAAVRLAGIHLSIYLITGVADETDEDLKASIRLIESI- 358

Query: 359 YAQAFSFKYSPRLGTPGSNM 378
             +    + SP    PG+ +
Sbjct: 359 --RPHDGQVSPLAYYPGTAL 376


>gi|253701976|ref|YP_003023165.1| hopanoid biosynthesis associated radical SAM protein HpnJ
           [Geobacter sp. M21]
 gi|251776826|gb|ACT19407.1| hopanoid biosynthesis associated radical SAM protein HpnJ
           [Geobacter sp. M21]
          Length = 473

 Score = 98.1 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 63/349 (18%), Positives = 119/349 (34%), Gaps = 53/349 (15%)

Query: 57  NSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEE 116
           N   + D++V+ T         +        R LK          + V+ G       EE
Sbjct: 64  NIAKEYDMVVMYTSTPTLAIDVET------ARRLKAQ----NPATVTVLTGPHVSVLPEE 113

Query: 117 -ILRRSPIVNVVVGPQTYYRLPELLERA-----------RFGKRVVDTDYSVEDKFERLS 164
            +   +  V++V   +  Y   EL E             + GK V   D       + L 
Sbjct: 114 SLRFAAGAVDIVCRGEFDYSTKELCEGKPRAEVDGISFLQDGKVVHTKDRPPIADLDSLP 173

Query: 165 IVDGGYNRKRGV---------TAFLTI--QEGCDKFCTFCVVPY-TRGI-EISRSLSQVV 211
                Y+R   +           +++I    GC   C +C+ P    G     RS   V 
Sbjct: 174 FASQVYHRDLPIEEYVIPHFRHPYVSIYASRGCPSRCIYCLWPQTFSGRTLRKRSPQNVY 233

Query: 212 DEARKLIDN--GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSH 269
           +E R + +N   V EI+       A R            +   +++     + + +  + 
Sbjct: 234 EEVRWIKENLPQVKEISFDDDTFTADR------------EHAKAIARAIKPLNVSWVINA 281

Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329
             +     +K   D    M ++ +  ++G++ ILK++ +  T  +  +       +   +
Sbjct: 282 RANCDYETLKELRDAG--MHHVVVGYETGNEEILKNIKKGVTKAQAIEFTRNCHKL--GL 337

Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
            I   F++G PGET +  + T+     +          SP  GT   +M
Sbjct: 338 TIHGAFVLGLPGETRETIKETIAYAIDLNLTSIQVSLASPYPGTEFYDM 386


>gi|300088002|ref|YP_003758524.1| radical SAM domain-containing protein [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
 gi|299527735|gb|ADJ26203.1| Radical SAM domain protein [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
          Length = 460

 Score = 98.1 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 69/370 (18%), Positives = 114/370 (30%), Gaps = 60/370 (16%)

Query: 43  RMEDMFFSQGYER------VNSMDDADLIVLN---------TCHIREKAAEKVYSFLGRI 87
            +  +    G+E       V+  +  D    N         T  + E+A  +        
Sbjct: 28  YIAAVLEQAGHEVAIYDNQVDPRNPEDFAEFNPDIVGFSVLTGPVIEEALTQS------- 80

Query: 88  RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER----- 142
                   +    + +V          E+ L  S I  VVVG    Y + EL E      
Sbjct: 81  ----AEFKRLNPSVAIVWGSAHPSVLPEQTLAESVIDYVVVGAGE-YAMLELAEELKAPE 135

Query: 143 -----------ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTA-FLTIQEGCDKFC 190
                       R GK V++      D  + L                 L    GC   C
Sbjct: 136 PRLDKIEGLGWKRDGKIVMNPPRPFIDDLDALPDPAWHLINVPLYWDKSLNTSRGCPGKC 195

Query: 191 TFCVVPYTRGIEI-SRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFS 248
           TFC  P      I   S  ++V +   L     +  I                G +    
Sbjct: 196 TFCYSPLFHKSYIGELSAERIVAQMEILYQRYNIRFIRFFEDTFT--------GNRERLR 247

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
              + +  I+  + + +       ++D  I            + L V++GS R+LK + +
Sbjct: 248 RFCHLM--IEKKLPVYWDCDSRIGLTDEDIALMARAG--CVSVGLGVETGSQRLLKFIRK 303

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
                   + + R+  VR  I     FI   P ET +DFR T +L+ ++G        Y+
Sbjct: 304 GIGVETVVKTVSRL--VRHRIMPRLYFIAELPTETMEDFRQTQNLIRRLGKPPYQYMPYT 361

Query: 369 PRLGTPGSNM 378
           P   T   + 
Sbjct: 362 PFPCTELYDY 371


>gi|197117268|ref|YP_002137695.1| radical SAM domain iron-sulfur cluster-binding oxidoreductase
           [Geobacter bemidjiensis Bem]
 gi|197086628|gb|ACH37899.1| radical SAM domain iron-sulfur cluster-binding oxidoreductase
           [Geobacter bemidjiensis Bem]
          Length = 473

 Score = 98.1 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 56/314 (17%), Positives = 109/314 (34%), Gaps = 43/314 (13%)

Query: 92  NSRIKEGGDLLVVVAGCVAQAEGEE-ILRRSPIVNVVVGPQTYYRLPELLERA------- 143
                +    + V+ G       EE +   +  V++V   +  Y   EL E         
Sbjct: 89  RRVKAQNPATVTVLTGPHVSVLPEESLRFAAGAVDIVCRGEFDYSTKELCEGKPRAEVEG 148

Query: 144 ----RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGV---------TAFLTI--QEGCDK 188
               + GK V   D       + L      Y+R   +           +++I    GC  
Sbjct: 149 ISFLQDGKVVHTKDRPPIADLDSLPFASQVYHRDLPIDEYVIPHFRHPYVSIYASRGCPS 208

Query: 189 FCTFCVVPY-TRGI-EISRSLSQVVDEARKLIDN--GVCEITLLGQNVNAWRGKGLDGEK 244
            C +C+ P    G     RS   V +E R + +N   V EI+       A R        
Sbjct: 209 RCIYCLWPQTFSGRTLRKRSPQNVYEEVRWIKENLPQVKEISFDDDTFTADR-------- 260

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304
               +   +++     + + +  +   +     +K   D    M ++ +  ++G+++ILK
Sbjct: 261 ----EHAKAIARAIKPLNVSWVINARANCDYETLKELRDAG--MHHVVVGYETGNEQILK 314

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
           ++ +  T  +  +       +   + I   F++G PGET +  + T+     +       
Sbjct: 315 NIKKGVTKAQAIEFTRNCHKL--GLTIHGAFVLGLPGETRETIKETIAYAIDLNLTSIQV 372

Query: 365 FKYSPRLGTPGSNM 378
              SP  GT   +M
Sbjct: 373 SLASPYPGTEFYDM 386


>gi|320107071|ref|YP_004182661.1| hopanoid biosynthesis associated radical SAM protein HpnJ
           [Terriglobus saanensis SP1PR4]
 gi|319925592|gb|ADV82667.1| hopanoid biosynthesis associated radical SAM protein HpnJ
           [Terriglobus saanensis SP1PR4]
          Length = 492

 Score = 98.1 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 64/346 (18%), Positives = 112/346 (32%), Gaps = 53/346 (15%)

Query: 63  DLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSP 122
           D +VL T  +            G  R +K +       + +   G     + +  L    
Sbjct: 72  DFLVLFTSTVGWSGDH------GLARAIKAA----NPAIKITFVGPPVTTDPDRALNECE 121

Query: 123 IVNVVVGPQTYYRLPELLE------------RARFGKRVVDTDYSVEDKFERLSIVDGGY 170
           +++ V   +  +   E               R   G+   + D    +  + L  V   Y
Sbjct: 122 VIDFVCRREFDFSTVEYANGKPLNEILGISYRGENGQIQHNPDRPQVEDLDALPWVTDIY 181

Query: 171 NRKRGVT---------AFLTI--QEGCDKFCTFCVVPYTRGIE--ISRSLSQVVDEARKL 217
            R   VT          ++++    GC   CTFC+ P T        RS   V  E +  
Sbjct: 182 KRDMDVTKYNVPFLLHPYVSLYSTRGCPAQCTFCLWPQTLSGHAWRKRSTDDVAAEMKHA 241

Query: 218 IDNG--VCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSD 275
            +    V E        N          K    +L   L  +     L ++++       
Sbjct: 242 KELWPNVKEFFFDDDTFNIQ--------KARTIELCEKLKPLG----LTWSSTSRVTTDR 289

Query: 276 CLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDF 335
             +KA  D       L +  +SG  +ILK++ +  T    R  +     +   + I +DF
Sbjct: 290 DTLKAMKDAG--CRLLIVGFESGDPQILKNIKKGATVERARDFVKDCHDL--GLIIHADF 345

Query: 336 IVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I+G PGET +  R T+D    +              GT   +  ++
Sbjct: 346 ILGLPGETKESIRNTIDFAKTLDCETIQVSIAHAYPGTEFYDYAKK 391


>gi|316933167|ref|YP_004108149.1| Radical SAM domain-containing protein [Rhodopseudomonas palustris
           DX-1]
 gi|315600881|gb|ADU43416.1| Radical SAM domain protein [Rhodopseudomonas palustris DX-1]
          Length = 632

 Score = 98.1 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 51/226 (22%), Positives = 93/226 (41%), Gaps = 13/226 (5%)

Query: 170 YNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI-EISRSLSQVVDEARKLI-DNGVCEITL 227
           Y  +    A +    GC   CTFC V    G     R++  V+DE + L+  +G+  I  
Sbjct: 248 YVGEDKPYATVLATRGCRARCTFCTVRNFNGFGLRQRTVQDVIDEVKHLVTHHGIRYID- 306

Query: 228 LGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL 287
                       L   + T +       ++ GL            + D +++A       
Sbjct: 307 ------WLDDDLLWDRERTLALFKGLAEQVPGLEWTASNGVIAVAIDDEIMQAMVASG-- 358

Query: 288 MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDF 347
           +    + V+SG+D +LK++ +  T  + R+   R+ +  P++ +S++FI+GFP ET    
Sbjct: 359 LRAFKIGVESGNDAMLKTIKKPTTKPKLRER-ARLFAKYPEVFVSTNFIIGFPDETFGQM 417

Query: 348 RATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV-DENVKAERLL 392
             + DL  ++    A  +   P  GT   +  + + D   K ER  
Sbjct: 418 MDSYDLAVELASDWASFYICQPLKGTEMFSAFQSLGDARTKEERYD 463


>gi|126180333|ref|YP_001048298.1| radical SAM domain-containing protein [Methanoculleus marisnigri
           JR1]
 gi|125863127|gb|ABN58316.1| Radical SAM domain protein [Methanoculleus marisnigri JR1]
          Length = 490

 Score = 98.1 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 46/244 (18%), Positives = 90/244 (36%), Gaps = 29/244 (11%)

Query: 153 DYSVEDKFERLSIVDGGYNRKRGVTAF-----------LTIQEGCDKFCTFCVVP--YTR 199
           +Y+  +  +R+  V   Y R   +  +           +    GC   CTFC  P     
Sbjct: 169 EYTTSEDLDRIPFVSSVYKRHLNIKDYYLSQTLYPEVQIFTGRGCPFHCTFCSWPENLMG 228

Query: 200 GIEISRSLSQVVDEARKLIDN--GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257
               SR+   +VDE   +  N   V EI  +  +            K    D+   + E 
Sbjct: 229 RKYRSRTADNIVDEFEYICQNLPEVKEI-FIEDDTYTI-------NKNLVLDVCRKIKER 280

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
           K  + + ++ +    +    ++           L +  +SG+D ILK++ +     + R 
Sbjct: 281 K--LDITWSCNARATLDYSTLQEMKSAG--CRLLIVGYESGNDEILKTIRKGVGTQQMRA 336

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
                +  +  + I  DFI+G PGET++    T+  + ++          +P  GT   +
Sbjct: 337 FTRDAKRAK--LMIHGDFIIGLPGETNETAEQTLKFIRELKPNILQVAVATPIPGTKFYD 394

Query: 378 MLEQ 381
             ++
Sbjct: 395 WAKE 398


>gi|239927883|ref|ZP_04684836.1| anaerobic magnesium-protoporphyrin IX monomethyl ester cyclase
           elongator protein [Streptomyces ghanaensis ATCC 14672]
          Length = 504

 Score = 97.7 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 57/307 (18%), Positives = 99/307 (32%), Gaps = 36/307 (11%)

Query: 101 LLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR------------ 148
             V++ G   +    E L     ++ V   +    +PEL E    G+             
Sbjct: 139 AKVILGGPHTEVYAHENLV-HESIDYVGVGEGVTIMPELAEAMERGEEPEGIRGLVTRKH 197

Query: 149 ------VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
                 +V+ +     +   L +            A +    GC   C+FC         
Sbjct: 198 DGGAAPMVNLEEVGWPERAGLPMDRYYSIMAPRPFATMISSRGCPFKCSFCFKQAVDKKS 257

Query: 203 ISRSLSQVV-DEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           + RS   VV +        GV EI          RG+          ++   + E  GL 
Sbjct: 258 MYRSPEDVVGEMTELKERWGVKEIMFYDDVFTLHRGR--------VREICGLIGE-TGLK 308

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
                 +    + + L++A          L   ++ G   IL+ M +     +  + +  
Sbjct: 309 VRWEAPTRVDLVPEPLLEAMA--GAGCVRLRFGIEHGDSEILERMRKESDIQKIEKAVTS 366

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN---M 378
                  I     FIVG+ GET + FR T+DL  ++    A  +  +P  GTP       
Sbjct: 367 AHEA--GIKGFGYFIVGWLGETREQFRRTVDLACRLPLDYASFYTATPLPGTPLHTESVA 424

Query: 379 LEQVDEN 385
             Q+  +
Sbjct: 425 AGQIPPD 431


>gi|307729782|ref|YP_003907006.1| hopanoid biosynthesis associated radical SAM protein HpnJ
           [Burkholderia sp. CCGE1003]
 gi|307584317|gb|ADN57715.1| hopanoid biosynthesis associated radical SAM protein HpnJ
           [Burkholderia sp. CCGE1003]
          Length = 473

 Score = 97.7 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 69/319 (21%), Positives = 119/319 (37%), Gaps = 48/319 (15%)

Query: 95  IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE------------R 142
            K    LL+ + G     +    L  S  ++ V   +  Y   E+              R
Sbjct: 92  KKRKPSLLIGMVGAKVAVDPHNSLTASEAIDFVCREEFDYTCEEVAAGKPFAQILGLSYR 151

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGV---------TAFLTI--QEGCDKFCT 191
           A  G    +    + +  + L  V   Y R   +           +++I    GC   CT
Sbjct: 152 AADGSIEHNAARPILENMDELPFVAPIYRRDLKIDNYFIGYLKHPYVSIYTGRGCRSRCT 211

Query: 192 FCVVPYTRG--IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSD 249
           FC+ P T G     +RS+  V++E +            +  N+   +    D +  TF+D
Sbjct: 212 FCLWPQTVGGHRYRTRSVENVLEEVK-----------WIRDNMPEVKEIMFDDD--TFTD 258

Query: 250 LLYSLSEI-KGLVRLRYTTSH--PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306
               + EI +GL RL  T S     ++    +K   +    +  L +  +SG D+IL ++
Sbjct: 259 FKPRVEEIARGLGRLGVTWSCNAKANVPYGTLKIMKE--NGLRLLLVGYESGDDQILLNI 316

Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
            +       R+  +  R +   I I   FI+G PGET    + T++   +I         
Sbjct: 317 KKGLRTDIARRFSEDCRKL--GIKIHGTFILGLPGETQQTIQKTIEYAKEINPHTIQVSL 374

Query: 367 YSPRLGTPGSNMLEQVDEN 385
            +P  GT    + +Q  EN
Sbjct: 375 AAPYPGT---RLYDQAVEN 390


>gi|294817818|ref|ZP_06776460.1| radical SAM domain-containing protein moeK5 [Streptomyces
           clavuligerus ATCC 27064]
 gi|326446714|ref|ZP_08221448.1| Radical SAM domain-containing protein [Streptomyces clavuligerus
           ATCC 27064]
 gi|294322633|gb|EFG04768.1| radical SAM domain-containing protein moeK5 [Streptomyces
           clavuligerus ATCC 27064]
          Length = 502

 Score = 97.3 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 63/354 (17%), Positives = 114/354 (32%), Gaps = 54/354 (15%)

Query: 40  DSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGG 99
           DS  + ++    G          DL+ ++T          +   +   R  K++  K   
Sbjct: 97  DSEGLRELLADFG---------PDLVGVST------TTPGLPGAVEACRAAKSTGAK--- 138

Query: 100 DLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR----------- 148
              V++ G   +    E L     ++ V   +    +PEL E    G++           
Sbjct: 139 ---VILGGPHTEVYARENLY-HDCIDYVGVGEGITIMPELAEALEQGEKPEGIRGLVTRD 194

Query: 149 -------VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
                  +V+ +     +   L +            A +    GC   C+FC        
Sbjct: 195 HDGGAAPMVNLEEVGWPERGGLPMNSYYSIMAPRPFATMISSRGCPFKCSFCFKQAVDKK 254

Query: 202 EISRSLSQVV-DEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            + R+   VV +        GV EI          RG+            + +L   +GL
Sbjct: 255 SMYRTPEDVVGEMTELQKRWGVKEIMFYDDVFTLHRGR---------VREICALINERGL 305

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
                  +    + + L++A          L   ++ G   IL  M +     +  + + 
Sbjct: 306 KVRWEAPTRVDLVPEKLLEAMA--GAGCVRLRFGIEHGDPEILARMRKESDIGKIERAVT 363

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
                   I     FIVG+  E+ + FR T+DL  +I    A  +  +P  GTP
Sbjct: 364 SAHEA--GIKGFGYFIVGWLDESREQFRRTLDLACRIPLDYASFYTATPLPGTP 415


>gi|315930280|gb|EFV09386.1| miaB-like tRNA modifying enzyme domain protein [Campylobacter
           jejuni subsp. jejuni 305]
          Length = 167

 Score = 97.3 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 34/148 (22%), Positives = 68/148 (45%), Gaps = 7/148 (4%)

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           S+++L+ M RR       ++ + I S     A+ +DFIV  PGE+++ ++  +    +  
Sbjct: 2   SEKMLRIMRRRSHTDNDLKLFNTIASK--GYALGTDFIVAHPGESEEVWQEALKKFKEFP 59

Query: 359 YAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQI-IEVL 417
                +F +SPR  T  + M + ++  +  ERL  L+  + +    F      Q+ +EVL
Sbjct: 60  LTHIHAFIFSPRNNTHSATMKDVINGTLAKERLNTLKSIVEKNNYEFRKK--NQVSLEVL 117

Query: 418 IEKHGKEKGKLVGRSPWLQSVVLNSKNH 445
           +E   ++ G   G   +   + + S   
Sbjct: 118 VE--NQKDGFFEGYDQFFNKIKIKSDKD 143


>gi|283852006|ref|ZP_06369281.1| Radical SAM domain protein [Desulfovibrio sp. FW1012B]
 gi|283572556|gb|EFC20541.1| Radical SAM domain protein [Desulfovibrio sp. FW1012B]
          Length = 490

 Score = 97.3 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 49/250 (19%), Positives = 87/250 (34%), Gaps = 29/250 (11%)

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLT-----------IQEGCDKFCTFCV 194
           G+ V + D    D  +RL  V   Y R   +  +                GC   C+FC+
Sbjct: 169 GRVVHNPDRPYLDDLDRLPPVAPVYKRHLDIRHYFNPNAKPPMVTLATSRGCPYRCSFCL 228

Query: 195 VPYT--RGIEISRSLSQVVDEARKLIDN--GVCEITLLGQNVNAWRGKGLDGEKCTFSDL 250
            P T        RS+ +V+DE    +DN  G+  I      + A        ++    + 
Sbjct: 229 HPQTLTGRAARCRSVEKVLDEVSWCLDNFPGLRTIFFEDDTLTA--------DRVRCREF 280

Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
             ++      +R  ++ +   D+   L+            + +  +S   + L SM +  
Sbjct: 281 CAAILRRG--LRFEWSANSRADLDAGLLAVM--HRAGCRQVCVGFESADPKALASMKKGL 336

Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370
            A    +     ++    I +   FI GFPG+T +   AT+D   K+    A  +     
Sbjct: 337 AASRMEKFRADAKAA--GIKVHGCFIFGFPGDTRESILATIDFALKLNPDTAQFYPVMVY 394

Query: 371 LGTPGSNMLE 380
            GT       
Sbjct: 395 PGTEAYAEYN 404


>gi|158521191|ref|YP_001529061.1| radical SAM domain-containing protein [Desulfococcus oleovorans
           Hxd3]
 gi|158510017|gb|ABW66984.1| Radical SAM domain protein [Desulfococcus oleovorans Hxd3]
          Length = 439

 Score = 97.3 bits (241), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 60/289 (20%), Positives = 94/289 (32%), Gaps = 25/289 (8%)

Query: 90  LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK-R 148
            K +         VV+ G    A  +E L      + VV  +       +L     G  +
Sbjct: 77  YKIADGFRQKGTPVVMGGFHVSALPDEAL---EHADSVVVGEAEPVWKRVLADVEAGHLQ 133

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQ--EGCDKFCTFCVVPYTRGI-EISR 205
            V     V D            +R    T F TIQ   GC   C +C V    G    +R
Sbjct: 134 PVYKAERVVDMNHMAVPCRHLLSRDMYSTGFYTIQATRGCPYNCEYCAVSAFFGRTYRTR 193

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            + QV++E +            +  N+       +D  K  F  L        G      
Sbjct: 194 PVDQVIEEIKGF---DTKNFFFVDDNITGK----VDYAKKLFRALTPLKRTWGG------ 240

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA-YEYRQIIDRIRS 324
            T+      + L+  +        Y  +  +S S++ L  MN+   +   Y + I +I  
Sbjct: 241 QTAITIAKDEELLSLYAKSGG--QYAFIGFESLSEKNLARMNKSWNSPETYVKAIAKIHK 298

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
               I I   FI G   +    F+ T++ V K     A     +P  GT
Sbjct: 299 K--GINILGSFIFGLDDDDPGVFQRTVEFVRKSKIDAAQFHILTPFPGT 345


>gi|317475986|ref|ZP_07935241.1| radical SAM superfamily protein [Bacteroides eggerthii 1_2_48FAA]
 gi|316907918|gb|EFV29617.1| radical SAM superfamily protein [Bacteroides eggerthii 1_2_48FAA]
          Length = 487

 Score = 97.3 bits (241), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 66/343 (19%), Positives = 116/343 (33%), Gaps = 46/343 (13%)

Query: 69  TCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVV 128
           T  + + +   + S +     LK    K      V++ G    A  EE L  S  V+ + 
Sbjct: 79  TLFVLDTSTPSIKSDVAFAERLK----KLYPSSFVILVGTHPSACPEETLDYSLAVDAIA 134

Query: 129 GPQTYYRLPELLERARFG--------------KRVVDTDYSVEDKF------------ER 162
             +    + EL +  + G              K V+ T+     K             E 
Sbjct: 135 IGEYDCIINELADSLQAGTELQTVRGLCIRTEKGVIRTEKMPPMKDLDELPFASQFIKEY 194

Query: 163 LSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE--ISRSLSQVVDEARKLIDN 220
           L   D  +      +  +    GC   C FCV P T       +RS   VV E   +  N
Sbjct: 195 LDEKDYFFAAATYPSIQIFTGRGCPFRCNFCVYPQTMHGHAFRARSAENVVAEFEYIAAN 254

Query: 221 --GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLI 278
              V E+ +      A         K    D+   L E K   RL++  +   ++    +
Sbjct: 255 FPDVKEVVIEDDTFTA--------NKKRVLDICRLLIEKKLYKRLKWLCNARVNLDLETM 306

Query: 279 KAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVG 338
           +           +   ++SGS +IL ++ +     ++ + +   +     + I + ++VG
Sbjct: 307 RTMKKAG--CRLIIPGIESGSQQILDNIKKGTKVEQFYEYVANAKKA--GLLIHACYMVG 362

Query: 339 FPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
             GET D    T+ L  ++    A  F   P  GT      + 
Sbjct: 363 NEGETKDTMNETLQLALRLNTDTAQFFPLIPYPGTEAYQWAKD 405


>gi|116247590|gb|ABJ90160.1| MoeK5 [Streptomyces ghanaensis ATCC 14672]
          Length = 407

 Score = 97.3 bits (241), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 57/307 (18%), Positives = 99/307 (32%), Gaps = 36/307 (11%)

Query: 101 LLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR------------ 148
             V++ G   +    E L     ++ V   +    +PEL E    G+             
Sbjct: 67  AKVILGGPHTEVYAHENLV-HESIDYVGVGEGVTIMPELAEAMERGEEPEGIRGLVTRKH 125

Query: 149 ------VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
                 +V+ +     +   L +            A +    GC   C+FC         
Sbjct: 126 DGGAAPMVNLEEVGWPERAGLPMDRYYSIMAPRPFATMISSRGCPFKCSFCFKQAVDKKS 185

Query: 203 ISRSLSQVV-DEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           + RS   VV +        GV EI          RG+          ++   + E  GL 
Sbjct: 186 MYRSPEDVVGEMTELKERWGVKEIMFYDDVFTLHRGR--------VREICGLIGE-TGLK 236

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
                 +    + + L++A          L   ++ G   IL+ M +     +  + +  
Sbjct: 237 VRWEAPTRVDLVPEPLLEAMA--GAGCVRLRFGIEHGDSEILERMRKESDIQKIEKAVTS 294

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN---M 378
                  I     FIVG+ GET + FR T+DL  ++    A  +  +P  GTP       
Sbjct: 295 AHEA--GIKGFGYFIVGWLGETREQFRRTVDLACRLPLDYASFYTATPLPGTPLHTESVA 352

Query: 379 LEQVDEN 385
             Q+  +
Sbjct: 353 AGQIPPD 359


>gi|167837301|ref|ZP_02464184.1| radical SAM domain protein [Burkholderia thailandensis MSMB43]
          Length = 481

 Score = 96.9 bits (240), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 67/360 (18%), Positives = 131/360 (36%), Gaps = 58/360 (16%)

Query: 54  ERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAE 113
           E +    D DL++++T              L +++            +LV + G     +
Sbjct: 69  ETLKIAQDYDLVIIHTSTPSFPTDAMFAEDLKKMK----------PSMLVGMVGAKVAVD 118

Query: 114 GEEILRRSPIVNVVVGPQTYYRLPELLE------------RARFGKRVVDTDYSVEDKFE 161
               L  +  ++ V   +  Y   ++              RA+ G    +    + +  +
Sbjct: 119 PHNSLAATEAIDFVCREEFDYTCKDIAAGLPFAEILGMSYRAKDGSIEHNGARPMIENMD 178

Query: 162 RLSIVDGGYNRKRGV---------TAFLTI--QEGCDKFCTFCVVPYTRG--IEISRSLS 208
            L  V   Y R   +           +++I    GC   CTFC+ P T G     +RS+ 
Sbjct: 179 ELPFVAPVYKRDLKIDNYFIGYLNYPYVSIYTGRGCRSKCTFCLWPQTVGGHRYRTRSVE 238

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK---GLVRLRY 265
            V+ E +            +  N+   +    D +  TF+D    + EI    G + + +
Sbjct: 239 SVLAEVK-----------WIRDNMPEVKEIMFDDD--TFTDFKPRVEEIARGLGKLGVTW 285

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
           + +   ++    +K   +    +  L +  +SG D+IL ++ +       R+  +  R +
Sbjct: 286 SCNAKANVPYSTLKIMKE--NGLRLLLVGYESGDDQILLNIKKGLRTDIARRFNEDCRKL 343

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
              I I   FI+G PGET +  + T++   +I          +P  GT    +  Q  EN
Sbjct: 344 --GIKIHGTFILGLPGETKETIKKTIEYAKEINPHTIQVSLAAPYPGT---RLYNQAIEN 398


>gi|167570648|ref|ZP_02363522.1| radical SAM domain protein [Burkholderia oklahomensis C6786]
          Length = 481

 Score = 96.9 bits (240), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 69/355 (19%), Positives = 133/355 (37%), Gaps = 58/355 (16%)

Query: 59  MDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEIL 118
             D DL++++T              L +++            +LV + G     +    L
Sbjct: 74  AKDYDLVIIHTSTPSFPTDAMFAEDLKKMK----------PSMLVGMVGAKVAVDPHNSL 123

Query: 119 RRSPIVNVVVGPQTYYRLPELLE------------RARFGKRVVDTDYSVEDKFERLSIV 166
             +  ++ V   +  Y   ++ E            RA+ G    +    + +  + L  V
Sbjct: 124 TATEAIDFVCREEFDYTCKDIAEGKPFSEILGMSYRAKDGSIEHNGPRPMIENMDELPFV 183

Query: 167 DGGYNRKRGV---------TAFLTI--QEGCDKFCTFCVVPYTRG--IEISRSLSQVVDE 213
              Y R   +           +++I    GC   CTFC+ P T G     +RS+  V+ E
Sbjct: 184 APVYKRDLKIDNYFIGYLNYPYVSIYTGRGCRSKCTFCLWPQTVGGHRYRTRSVESVLAE 243

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK---GLVRLRYTTSHP 270
            +            +  N+   +    D +  TF+D    + EI    G + + ++ +  
Sbjct: 244 VK-----------WIRDNMPEVKEIMFDDD--TFTDFKPRVEEIARGLGKLGVTWSCNAK 290

Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330
            ++    +K   +    +  L +  +SG D+IL ++ +       R+  +  R +   I 
Sbjct: 291 ANVPYSTLKIMKE--NGLRLLLVGYESGDDQILLNIKKGLRTDIARRFNEDCRKL--GIK 346

Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
           I   FI+G PGET D  + T++   +I      + + S     PG+ + EQ  EN
Sbjct: 347 IHGTFILGLPGETKDTIKKTIEYAKEI---NPHTIQVSLAAPYPGTRLYEQAIEN 398


>gi|317152418|ref|YP_004120466.1| Radical SAM domain-containing protein [Desulfovibrio aespoeensis
           Aspo-2]
 gi|316942669|gb|ADU61720.1| Radical SAM domain protein [Desulfovibrio aespoeensis Aspo-2]
          Length = 484

 Score = 96.9 bits (240), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 61/324 (18%), Positives = 106/324 (32%), Gaps = 34/324 (10%)

Query: 72  IREKAAEKVYSFLGRIRNLKNSRIK-----EGGDLLVVVAGCVAQAEGEEILRRSPIVNV 126
           +   + +   + +  + +LK    +      G     +   C++    + I+ R P   +
Sbjct: 83  VILSSTQSFQADIALLTDLKRRAPQLRTILFGSHPTFMPQYCLSSPAVDFIVIREPEDTI 142

Query: 127 VVGPQTYYRLPELLERARFGKR-----VVDTDYSVEDKFERLSIVDGGYNR--------- 172
               QT     +L E A  G R     V  T        + L I D              
Sbjct: 143 RELLQTIDSSGDLGEVAGIGYRDKSGSVQLTPPRPFIDMDELPIPDRRLLPARVDYFNPV 202

Query: 173 -KRGVTAFLTIQEGCDKFCTFCVVPYTRG-IEISRSLSQVVDEARKLIDNGVCEITLLGQ 230
            KR     +    GC   C FC  P   G     RS   V+ E  ++   G  E+    +
Sbjct: 203 VKRMPYTTIQTSRGCPGKCIFCTAPEFYGKRIRCRSTDNVLKELHEIKSLGYREVFFRDE 262

Query: 231 NVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY 290
              A+       +K         + +   L  +        D     + A          
Sbjct: 263 TFTAY-------KKRNIEICARMVKDSLDLSWIANGRVDLVD--SEALAAMKKAG--CHM 311

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
           +   V++GSD IL+   +  TA + RQ     + V   +   +  +VG PGE++     T
Sbjct: 312 IKFGVETGSDEILRRYKKGTTAEQARQAFRYAKEV--GLDTHAHLVVGGPGESEATLAHT 369

Query: 351 MDLVDKIGYAQAFSFKYSPRLGTP 374
           ++ V ++    A     +P  GT 
Sbjct: 370 IEFVKELDPTTASFGILTPYAGTE 393


>gi|83589682|ref|YP_429691.1| radical SAM family protein [Moorella thermoacetica ATCC 39073]
 gi|83572596|gb|ABC19148.1| Radical SAM [Moorella thermoacetica ATCC 39073]
          Length = 444

 Score = 96.9 bits (240), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 58/291 (19%), Positives = 97/291 (33%), Gaps = 22/291 (7%)

Query: 88  RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147
           R  + +        +VV+ G    A  EE +      + VV  +       LL     G+
Sbjct: 72  RAYEIADAFRERGTMVVLGGMHPSALPEEAIA---HADAVVVGEAEGSWQRLLTDLENGQ 128

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQ--EGCDKFCTFCVVPYTRGIE-IS 204
                        E + I      ++       T+Q   GC   C+FC V    G     
Sbjct: 129 LQAFYRQEKRPSLEHMVIPRRDLLQRSRYLVPDTVQTTRGCPFACSFCSVSQFFGHSYRF 188

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R + +V+ E R L       I  +  N+         G       L   L+ +   V+  
Sbjct: 189 RPVEEVISEVRDLEGE---VIAFIDDNIV--------GNPAYARRLFTELARLPRKVKWF 237

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT-AYEYRQIIDRIR 323
              S      + L++       +   L +  +S S   LK++ +R     +YRQ I ++ 
Sbjct: 238 SQGSLNIARDEELLRLAAASGCI--GLFIGFESLSPANLKAVGKRVNLVDDYRQAIKKLH 295

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
                IAI   F+ G   + +  F  T+    +     A     +P  GTP
Sbjct: 296 D--HGIAIEGAFVFGLDEDDESVFERTVKFAQENRLEAAQFGILTPFPGTP 344


>gi|330998446|ref|ZP_08322270.1| radical SAM domain protein [Paraprevotella xylaniphila YIT 11841]
 gi|329568552|gb|EGG50357.1| radical SAM domain protein [Paraprevotella xylaniphila YIT 11841]
          Length = 486

 Score = 96.9 bits (240), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 67/354 (18%), Positives = 125/354 (35%), Gaps = 52/354 (14%)

Query: 55  RVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG 114
             N  DD  L VL+T      + +   SF GRI+ +            +V+ G    A  
Sbjct: 71  LANKADDNTLFVLDTST---PSIKSDVSFAGRIKQM-------YPHSFLVLVGTHPSACA 120

Query: 115 EEILRRSPIVNVVVGPQTYYRLPELLERARFGKR-------------------VVDTDYS 155
           EE L  S  V+ V   +    + EL +     +                    ++ +  +
Sbjct: 121 EETLGYSKAVDAVAIGEYDETIKELADAIENREELLQVRGLCLRQGETFIRTGIMPSIKN 180

Query: 156 VEDKFERLSIVDGGYNRKRGVTA---FLTIQ----EGCDKFCTFCVVPYTRGIE--ISRS 206
           +++     + +    N +    A   + +IQ     GC   C FCV P T       +RS
Sbjct: 181 LDEIPFASTFIKNNLNERDYFFAAATYPSIQIFTGRGCPFHCNFCVYPQTMHGHIFRARS 240

Query: 207 LSQVVDEARKLIDN--GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
              VV+E   + +N   V E+ +                K    ++   L       RL+
Sbjct: 241 AENVVNEFEYIAENFPDVKEVVIEDDTFTV--------NKKRVLEICNLLINKGLNKRLK 292

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +  +   ++    + A          +   ++SGS +IL ++ +     ++ + +   + 
Sbjct: 293 WLCNARVNLDYETMCAMKKAG--CRLIIPGIESGSQQILDNIKKGTKVEQFYRYVSDAKK 350

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
               + I + ++VG  GET +    T++L  K+    A  F   P  GT     
Sbjct: 351 A--GLLIHACYMVGNCGETRETMNETLNLALKLNTDTAQFFPLIPYPGTEAYTW 402


>gi|167563483|ref|ZP_02356399.1| radical SAM domain protein [Burkholderia oklahomensis EO147]
          Length = 481

 Score = 96.9 bits (240), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 70/360 (19%), Positives = 133/360 (36%), Gaps = 58/360 (16%)

Query: 54  ERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAE 113
           E +    D DL++++T              L +++            +LV + G     +
Sbjct: 69  ETLKIAKDYDLVIIHTSTPSFPTDAMFAEDLKKMK----------PSMLVGMVGAKVAVD 118

Query: 114 GEEILRRSPIVNVVVGPQTYYRLPELLE------------RARFGKRVVDTDYSVEDKFE 161
               L  +  ++ V   +  Y   ++ E            RA+ G    +    + +  +
Sbjct: 119 PHNSLTATEAIDFVCREEFDYTCKDIAEGKPFSEILGMSYRAKDGSIEHNGPRPMIENMD 178

Query: 162 RLSIVDGGYNRKRGV---------TAFLTI--QEGCDKFCTFCVVPYTRG--IEISRSLS 208
            L  V   Y R   +           +++I    GC   CTFC+ P T G     +RS+ 
Sbjct: 179 ELPFVAPVYKRDLKIDNYFIGYLNYPYVSIYTGRGCRSKCTFCLWPQTVGGHRYRTRSVE 238

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK---GLVRLRY 265
            V+ E +            +  N+   +    D +  TF+D    + EI    G + + +
Sbjct: 239 SVLAEVK-----------WIRDNMPEVKEIMFDDD--TFTDFKPRVEEIARGLGKLGVTW 285

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
           + +   ++    +K   +    +  L +  +SG D+IL ++ +       R+  +  R +
Sbjct: 286 SCNAKANVPYSTLKIMKE--NGLRLLLVGYESGDDQILLNIKKGLRTDIARRFNEDCRKL 343

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
              I I   FI+G PGET D  + T++   +I          +P  GT    + EQ  EN
Sbjct: 344 --GIKIHGTFILGLPGETKDTIKKTIEYAKEINPHTIQVSLAAPYPGT---RLYEQAIEN 398


>gi|23014689|ref|ZP_00054493.1| COG1032: Fe-S oxidoreductase [Magnetospirillum magnetotacticum
           MS-1]
          Length = 486

 Score = 96.9 bits (240), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 62/351 (17%), Positives = 135/351 (38%), Gaps = 32/351 (9%)

Query: 54  ERVNSMDDADLIVLNT--CHIREKA--AEKVYSFLGRIRNL-KNSRIKEGGDLLVVVAGC 108
           +  + +  + L++ +T    +R+ A    ++ + +  +R     S      +  +     
Sbjct: 69  QVADRIQGSQLVITSTSVMTMRDDATFVRELKTRIPGLRAAAYGSHPTFKPEETLEKGYD 128

Query: 109 VAQAEGEEILRRSPIVNVVVGPQTYYRL-PELLERARFGKRVVDTDYSVEDKFERLSIVD 167
            A     E + R  +  +  G +      P ++ R   G  + +  Y   D  +++  +D
Sbjct: 129 FAIQREPEWVLRDLVRRLDAGDEDGAAHVPGIVTRGTDGTLIKNDRYPFIDDLDQIPPLD 188

Query: 168 GGYNRKRGVT--------AFLTIQ--EGCDKFCTFCVVPYTRG-IEISRSLSQVVDEARK 216
            G   +  V          ++T+    GC   C++C  P+  G      S  +V+D+   
Sbjct: 189 VGLLPRDYVYFNPIVRNLPYITVSSSHGCPAKCSYCTAPFFHGTRTRFMSAGKVLDDMAY 248

Query: 217 LIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD-MSD 275
            ++ G+ E+    +   A        ++    D+   +  I+  +R  +  +   D +  
Sbjct: 249 YLNQGMREVYFRDETFTA--------DRQRVMDICTGI--IERNLRFSWICNARVDTVDP 298

Query: 276 CLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDF 335
            ++            +    +SGS  +L ++ +  T  + R            IA  + F
Sbjct: 299 EMLGLM--HRAGCHLIKFGAESGSQTVLDAVKKGITLQQTRDAFRWCSEA--GIATHAHF 354

Query: 336 IVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           +VG PGET +   AT+DL  +I  + A     +P  GTP    + ++DE++
Sbjct: 355 MVGMPGETLETMEATLDLAIEIAPSTATFGICTPYPGTPLFRDVARLDESI 405


>gi|254392938|ref|ZP_05008104.1| MoeK5 [Streptomyces clavuligerus ATCC 27064]
 gi|197706591|gb|EDY52403.1| MoeK5 [Streptomyces clavuligerus ATCC 27064]
          Length = 434

 Score = 96.6 bits (239), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 63/354 (17%), Positives = 114/354 (32%), Gaps = 54/354 (15%)

Query: 40  DSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGG 99
           DS  + ++    G          DL+ ++T          +   +   R  K++  K   
Sbjct: 29  DSEGLRELLADFG---------PDLVGVST------TTPGLPGAVEACRAAKSTGAK--- 70

Query: 100 DLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR----------- 148
              V++ G   +    E L     ++ V   +    +PEL E    G++           
Sbjct: 71  ---VILGGPHTEVYARENLY-HDCIDYVGVGEGITIMPELAEALEQGEKPEGIRGLVTRD 126

Query: 149 -------VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
                  +V+ +     +   L +            A +    GC   C+FC        
Sbjct: 127 HDGGAAPMVNLEEVGWPERGGLPMNSYYSIMAPRPFATMISSRGCPFKCSFCFKQAVDKK 186

Query: 202 EISRSLSQVV-DEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            + R+   VV +        GV EI          RG+            + +L   +GL
Sbjct: 187 SMYRTPEDVVGEMTELQKRWGVKEIMFYDDVFTLHRGR---------VREICALINERGL 237

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
                  +    + + L++A          L   ++ G   IL  M +     +  + + 
Sbjct: 238 KVRWEAPTRVDLVPEKLLEAMA--GAGCVRLRFGIEHGDPEILARMRKESDIGKIERAVT 295

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
                   I     FIVG+  E+ + FR T+DL  +I    A  +  +P  GTP
Sbjct: 296 SAHEA--GIKGFGYFIVGWLDESREQFRRTLDLACRIPLDYASFYTATPLPGTP 347


>gi|291436223|ref|ZP_06575613.1| radical SAM domain-containing protein [Streptomyces ghanaensis ATCC
           14672]
 gi|291339118|gb|EFE66074.1| radical SAM domain-containing protein [Streptomyces ghanaensis ATCC
           14672]
          Length = 470

 Score = 96.6 bits (239), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 57/307 (18%), Positives = 99/307 (32%), Gaps = 36/307 (11%)

Query: 101 LLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR------------ 148
             V++ G   +    E L     ++ V   +    +PEL E    G+             
Sbjct: 105 AKVILGGPHTEVYAHENLV-HESIDYVGVGEGVTIMPELAEAMERGEEPEGIRGLVTRKH 163

Query: 149 ------VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
                 +V+ +     +   L +            A +    GC   C+FC         
Sbjct: 164 DGGAAPMVNLEEVGWPERAGLPMDRYYSIMAPRPFATMISSRGCPFKCSFCFKQAVDKKS 223

Query: 203 ISRSLSQVV-DEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           + RS   VV +        GV EI          RG+          ++   + E  GL 
Sbjct: 224 MYRSPEDVVGEMTELKERWGVKEIMFYDDVFTLHRGR--------VREICGLIGE-TGLK 274

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
                 +    + + L++A          L   ++ G   IL+ M +     +  + +  
Sbjct: 275 VRWEAPTRVDLVPEPLLEAMA--GAGCVRLRFGIEHGDSEILERMRKESDIQKIEKAVTS 332

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN---M 378
                  I     FIVG+ GET + FR T+DL  ++    A  +  +P  GTP       
Sbjct: 333 AHEA--GIKGFGYFIVGWLGETREQFRRTVDLACRLPLDYASFYTATPLPGTPLHTESVA 390

Query: 379 LEQVDEN 385
             Q+  +
Sbjct: 391 AGQIPPD 397


>gi|126666986|ref|ZP_01737962.1| hypothetical protein MELB17_07094 [Marinobacter sp. ELB17]
 gi|126628702|gb|EAZ99323.1| hypothetical protein MELB17_07094 [Marinobacter sp. ELB17]
          Length = 183

 Score = 96.6 bits (239), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 49/122 (40%), Gaps = 10/122 (8%)

Query: 13  MVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHI 72
           M+ +  +      +    S GC   + DS R+       GY+ V +  DAD++V+NTC  
Sbjct: 37  MIEKTENTKASNGKVGFISLGCPKALVDSERILTQLRLDGYDVVPTYKDADIVVVNTCGF 96

Query: 73  REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT 132
            + A ++    +G              +  V+V GC+   E ++I    P V VV     
Sbjct: 97  IDAAKQESLDAIGEA---------ISENGKVIVTGCMG-LEADKIRETHPGVLVVSNLHA 146

Query: 133 YY 134
             
Sbjct: 147 CE 148


>gi|218883363|ref|YP_002427745.1| radical SAM domain protein [Desulfurococcus kamchatkensis 1221n]
 gi|218764979|gb|ACL10378.1| radical SAM domain protein [Desulfurococcus kamchatkensis 1221n]
          Length = 544

 Score = 96.2 bits (238), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 82/473 (17%), Positives = 158/473 (33%), Gaps = 94/473 (19%)

Query: 75  KAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTY- 133
            A       LGR+        +     ++ V G V    G E+L+R  I  V+VG     
Sbjct: 78  SAMSSDKGALGRVVGYIR---RVNPSAVITVGGPVGFEYG-ELLKRFDIDYVIVGEAEIP 133

Query: 134 -YRLPELLERARFGK------------------RVVDTDYSVEDKFERLSIVDGGYNRKR 174
             R  E +   R  K                  R + T   V    +  + +D  ++  +
Sbjct: 134 LQRFMECVVEDRCSKHEVPALGFRDNGAVTLTTRHIHTPSDVLSSIKPWARIDEMFDYPQ 193

Query: 175 GVTAFLTIQEGCDKF----------------------------------CTFCVVPYTRG 200
               ++    GC  F                                  C FC VP   G
Sbjct: 194 VYRVYVEAVRGCSNFMRPMVGSIGCIFCGNCRSSKNEERVNCPANIPPGCGFCSVPSMFG 253

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL------------DGEKCTFS 248
              SRS+  +V E  +LI++G   I L   ++    G+ L                    
Sbjct: 254 PARSRSVDSIVKEVEELIEHGARRIVLSAPDI-LDYGRDLLVNGPLTNPCNPPANTEAIE 312

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGD-LDVLMP--YLHLPVQSGSD-RILK 304
           +LL  L+ +K + + R         +  +       L   +P   +H+ +++GSD    K
Sbjct: 313 ELLSRLNALKPVSQGRVVVMIENIKACLVNDEVAKILGKYLPGTTVHIGLETGSDTYNDK 372

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI---GYAQ 361
            + +     +    +  ++     +      +   P  +   +  T+  V+++   G  +
Sbjct: 373 VLGKPIKVADVVNAVRLLKKN--SLRPYVYLMHSLPFASRKIYEETLKTVNELGEAGVEK 430

Query: 362 AFSFKYSPRLGTPGSNMLEQVDENVK--AERLLCLQKKLREQQVSFNDACVGQIIEV-LI 418
              +KY+P   T      E++    +   E +  L+  +R          +G+ +E  +I
Sbjct: 431 ITLYKYTPLPYTA----FEKIPSEERGVEEWIARLKAVVRRYNTMQKKEILGKHVEAFII 486

Query: 419 EKHGKEKGKLVGRSPWLQSVVL---NSKNHNIGDIIKVRITDVKISTLYGELV 468
           E +G+  G  V   P    V+     ++    G ++ V +T  +   + G +V
Sbjct: 487 ESNGRVYGYPVKHGP----VIFLGRIARRGLNGCLVIVEVTGTRYRYVKGRIV 535


>gi|300813753|ref|ZP_07094066.1| conserved hypothetical protein [Peptoniphilus sp. oral taxon 836
           str. F0141]
 gi|300512136|gb|EFK39323.1| conserved hypothetical protein [Peptoniphilus sp. oral taxon 836
           str. F0141]
          Length = 100

 Score = 96.2 bits (238), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 25/95 (26%), Positives = 43/95 (45%), Gaps = 4/95 (4%)

Query: 27  FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
             + + GC  N  DS  M  +     Y   N    AD+I++NTC   + A E+    + +
Sbjct: 4   VKIVTLGCSKNEVDSSCMMSILDKNRYSVENDPQKADIIIVNTCGFIDAAKEESIDTILQ 63

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRS 121
           +   K      G    ++++GC+AQ   EE+L+  
Sbjct: 64  MAKYKE----TGSCKKMILSGCLAQRYPEELLKEY 94


>gi|150391222|ref|YP_001321271.1| radical SAM domain-containing protein [Alkaliphilus metalliredigens
           QYMF]
 gi|149951084|gb|ABR49612.1| Radical SAM domain protein [Alkaliphilus metalliredigens QYMF]
          Length = 438

 Score = 96.2 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 64/324 (19%), Positives = 115/324 (35%), Gaps = 33/324 (10%)

Query: 54  ERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAE 113
           E +    DAD++ + +              + R  ++     K G    V++ G +A   
Sbjct: 52  EEIPFESDADVVAIGSMG----------HAIIRSIDIATEFKKRGKT--VIMGGYMASLM 99

Query: 114 GEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRK 173
           GEE  +    V  V+G        +LLE    G+        + +    L   D    + 
Sbjct: 100 GEEAKKYCDSV--VIG-DAEGVWGQLLEDYESGQLKDFYKEELNELSTPLPRFDLIMGKN 156

Query: 174 RGVTAFLTIQEGCDKFCTFCVVPYTRG-IEISRSLSQVVDEARKLIDNGVCEITLLGQNV 232
            G    +    GC   C+FC V        + R++  V+ +  ++ + G  +  LL  N+
Sbjct: 157 IGDFLPVQAGRGCPNSCSFCSVHCLYKNKYLKRAIPDVLRDIAQIKELGFKKFLLLDDNI 216

Query: 233 NAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT-TSHPRDMSDCLIKAHGDLDVLMPYL 291
            A R             L+    EIK L     +  +        L+KA  D   +   L
Sbjct: 217 IADRDY-----------LMTLCGEIKKLKMKWISQCAITIGEDLELLKAVADSGCIA--L 263

Query: 292 HLPVQSGSDRILKSMNRRH-TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
              ++S +   L  M++       Y  +I  I+     I +S++ +VG  G+T     AT
Sbjct: 264 SFGLESITQESLNDMDKSWANPSHYPHLIKTIQEA--GIDVSTEMVVGADGDTLGSIAAT 321

Query: 351 MDLVDKIGYAQAFSFKYSPRLGTP 374
              ++         +  +P  GT 
Sbjct: 322 AQFIEDNKIVVPRFYILTPIPGTK 345


>gi|153869266|ref|ZP_01998915.1| Magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative
           cyclase [Beggiatoa sp. PS]
 gi|152074191|gb|EDN71072.1| Magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative
           cyclase [Beggiatoa sp. PS]
          Length = 470

 Score = 96.2 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 57/324 (17%), Positives = 106/324 (32%), Gaps = 49/324 (15%)

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVV----------------GP 130
           +R       +   +L ++V G       +EIL     ++ +                   
Sbjct: 82  VRKSAAYIKESFPNLKIIVGGMHPTLFPKEILENCSFIDYIAIGEADNTLVKLCDRLEKN 141

Query: 131 QTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDG-----------------GYNRK 173
           ++    P + +R R GK V+          + L +                        +
Sbjct: 142 ESDTITPGIAQRTRDGKIVIGERPEPIKNLDELPMPAWQDVSINNYHFDYSGWLNPKKHQ 201

Query: 174 RGVTAFLTIQEGCDKFCTFCVVPYTRGI-EISRSLSQVVDEARKLIDN-GVCEITLLGQN 231
             + A +     C   C FC      G      S  +VVDE  +L    GV     +  N
Sbjct: 202 IDIVAPILTSRSCPFDCNFCAFNTLMGRGFRYHSPKRVVDEIERLHKQFGVNYFEFIDDN 261

Query: 232 VNAWRGKGLDGEKCTFSDLLYSLSEIK-GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY 290
           +          +K    ++   + +    +     +  H   +   +I A  D   L  +
Sbjct: 262 IGI--------KKARLIEICNEILKRNLDIQFTSMSGLHIATLDQDIIDALCDAGYL--H 311

Query: 291 LHLPVQSGSDRIL-KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
             LPV+  SD I  K + ++ +  +  ++ D  +     +     FI+GFP ETD   R 
Sbjct: 312 AILPVEHASDFIRNKVIGKKLSRDKIFEVADLFKKR--GVMTRGFFIIGFPEETDKTIRE 369

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGT 373
           T+ ++ ++       F   P  GT
Sbjct: 370 TIKMIKELDLDLVNVFNLIPFPGT 393


>gi|220907315|ref|YP_002482626.1| Radical SAM domain-containing protein [Cyanothece sp. PCC 7425]
 gi|219863926|gb|ACL44265.1| Radical SAM domain protein [Cyanothece sp. PCC 7425]
          Length = 459

 Score = 96.2 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 63/330 (19%), Positives = 112/330 (33%), Gaps = 31/330 (9%)

Query: 54  ERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAE 113
           + V +  +ADLIVL+       A E              ++I +     V+  G  A   
Sbjct: 48  QPVPTQTEADLIVLS--FFTGFAPEAYRL----------AQIFKQNGKKVIAGGPHATFW 95

Query: 114 GEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRK 173
            EE L+     + V+  +      ++L  A   +       S     +            
Sbjct: 96  VEEALQYC---DAVMIGEAESVWEQVLADADRNQLQPRYAGSPLPLEKLPCPRYELLPPS 152

Query: 174 RGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEAR--KLIDNGVCEITLLGQN 231
             V   +    GC   C+FC VP        R L +V+ E +  +       ++      
Sbjct: 153 YVVQRVVQATRGCSFRCSFCSVPIVNPGFRMRPLEEVLAEIQYDRFPFWWQRKMVW---- 208

Query: 232 VNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL 291
              +    L   +    +LL ++  +K         S        L++       +   +
Sbjct: 209 ---FWDDNLTANRPYIKELLRAMIPLKRWW--LTQASMDITTDTELLELMRASGCI--GV 261

Query: 292 HLPVQSGSDRILKSMNRR-HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
            L ++S     LK   +R +    YR+ I+ +      IA+ + FI GF  +T     A 
Sbjct: 262 FLGIESFGQDSLKEAQKRQNRVNYYRERIETLHQY--GIAVMAGFIAGFDHDTIASIGAM 319

Query: 351 MDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
            D + ++G    F    +P  GTP  + LE
Sbjct: 320 ADQLYEVGVDVPFLSLLTPYKGTPLYDRLE 349


>gi|260777031|ref|ZP_05885925.1| radical SAM [Vibrio coralliilyticus ATCC BAA-450]
 gi|260606697|gb|EEX32971.1| radical SAM [Vibrio coralliilyticus ATCC BAA-450]
          Length = 403

 Score = 96.2 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 62/329 (18%), Positives = 112/329 (34%), Gaps = 32/329 (9%)

Query: 56  VNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGE 115
            +   DADL+V+              S     R  + S         VV+ G   +   E
Sbjct: 52  ADPSPDADLVVI------------FMSTPDAYRAYELSSHYRQQGKWVVLGGLHTKFNPE 99

Query: 116 EILRRSPIVNVVVGPQTYYRLPELLERARFG--KRVVDTDYSVEDKFERLSIVDGGYNRK 173
           E    +   + ++  +      +LL  A  G  K    ++  V+         D      
Sbjct: 100 E---AAEYADSLIFGEVENYWVQLLNDAELGQLKAQYQSNEPVDLSCLNPYPTDIIPPSV 156

Query: 174 RGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVN 233
              T  + +  GC   C FC+VP        R ++ +V+E ++L   GV  + L   N+ 
Sbjct: 157 YDYTWSVVVTRGCPFKCNFCLVPRFFNKFEQRPIAHIVEEVKQLKTLGVEWVELHSDNLT 216

Query: 234 AWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHL 293
             R   +D        L  +L  +K    + +       ++                + L
Sbjct: 217 HDRQYAMD--------LFAALEPLK----MNFYGETTVLIARDEALLAAASRAGFKAVLL 264

Query: 294 PVQSGSDRILKSMNRRHTAY-EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352
            +++ S+  LK+  +      + ++ I +IR  R  I +  DF+ GF       F+ T  
Sbjct: 265 GIETPSEAALKAQKKGFVKPVKMKEYIAKIR--RHGIEVWGDFLFGFDEHDSTIFKQTQA 322

Query: 353 LVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
            V  I   +       P  GT     L++
Sbjct: 323 FVKDIKVDKVIPHYMIPFPGTETFRKLDE 351


>gi|319902401|ref|YP_004162129.1| Radical SAM domain protein [Bacteroides helcogenes P 36-108]
 gi|319417432|gb|ADV44543.1| Radical SAM domain protein [Bacteroides helcogenes P 36-108]
          Length = 487

 Score = 96.2 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 66/340 (19%), Positives = 116/340 (34%), Gaps = 46/340 (13%)

Query: 69  TCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVV 128
           T  + + +   + S +     LK    K      +++ G    A  EE LR S  V+ + 
Sbjct: 79  TLFVLDTSTPSIKSDVAFAERLK----KLYPSSFIILVGTHPSACPEETLRYSSAVDAIA 134

Query: 129 GPQTYYRLPEL---LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQE- 184
             +    + EL   L+ +   + V      +ED F R   +    +      A   I+E 
Sbjct: 135 IGEYDCIIKELADSLQNSTELQSVRGLCMRIEDGFIRTEKMPPLKDLDELPFASQFIKEH 194

Query: 185 ----------------------GCDKFCTFCVVPYTRGIE--ISRSLSQVVDEARKLIDN 220
                                 GC   C FCV P T       +RS   VV E   +  N
Sbjct: 195 LDEKDYFFAAATYPSIQIFTGRGCPFRCNFCVYPQTMHGHAFRARSAENVVAEFEYIAAN 254

Query: 221 --GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLI 278
              V E+ +      A         K    D+   L E K   RL++  +   D+    +
Sbjct: 255 FPDVKEVVIEDDTFTA--------NKKRVLDICRLLMERKLQKRLKWLCNARVDLDLETM 306

Query: 279 KAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVG 338
                       +   ++SG+ +IL ++ +     ++ + +   +     + I + +++G
Sbjct: 307 CIMKKAG--CRLIIPGIESGNQQILDNIKKGTKVEQFYEYVANAKKA--GLLIHACYMIG 362

Query: 339 FPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
             GET +    T+ L  K+    A  F   P  GT     
Sbjct: 363 NNGETKETMAETLRLALKLNTDTAQFFPLIPYPGTEAYQW 402


>gi|294793560|ref|ZP_06758697.1| putative radical SAM domain protein [Veillonella sp. 3_1_44]
 gi|294455130|gb|EFG23502.1| putative radical SAM domain protein [Veillonella sp. 3_1_44]
          Length = 446

 Score = 96.2 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 41/245 (16%), Positives = 87/245 (35%), Gaps = 20/245 (8%)

Query: 136 LPELLERARFGKRVVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDKFCTFC 193
            P+++E A+ G+       +  +  + +     D            ++   GC   C FC
Sbjct: 118 WPQIIEDAKHGRLQSQYVSAPLESGDDIASPAYDLIDKTDYLWYNVVSTSRGCPHKCDFC 177

Query: 194 VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS 253
                    I+R++  V+ + ++L   G   I  +  N          G        L  
Sbjct: 178 YNSSGTHQYINRNIEDVLRDIKRL---GTKHIMFIDDNFI--------GNISWTKQFLER 226

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR-RHTA 312
           +  +K       T          L+    +       L +  +S S + L S+++ ++  
Sbjct: 227 IKPLKLNWNAAVT--MKIGQYPELMDLMKETG--CQSLFIGFESISPQSLSSVHKMQNNR 282

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
            E+ ++I+ +      I +++ F+ G  G+T + F+ T+D +         S   +P  G
Sbjct: 283 EEFERLINELHKR--GIMVNASFVFGLDGDTPETFKNTLDWIISQKIDTITSHIVTPYPG 340

Query: 373 TPGSN 377
           T    
Sbjct: 341 TEFYK 345


>gi|323525903|ref|YP_004228056.1| hopanoid biosynthesis associated radical SAM protein HpnJ
           [Burkholderia sp. CCGE1001]
 gi|323382905|gb|ADX54996.1| hopanoid biosynthesis associated radical SAM protein HpnJ
           [Burkholderia sp. CCGE1001]
          Length = 473

 Score = 96.2 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 63/319 (19%), Positives = 119/319 (37%), Gaps = 48/319 (15%)

Query: 95  IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE------------R 142
            K    +L+ + G     +    L  S  ++ V   +  Y   E+              R
Sbjct: 92  KKRKPSVLIGMVGAKVAVDPHNSLTASEAIDFVCREEFDYTCEEVAAGKPFAQILGLSYR 151

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGV---------TAFLTI--QEGCDKFCT 191
           A  G    +    + +  + L  V   Y R   +           +++I    GC   CT
Sbjct: 152 AADGSIEHNAARPILENMDELPFVAPVYKRDLKIDNYFIGYLKHPYVSIYTGRGCRSKCT 211

Query: 192 FCVVPYTRG--IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSD 249
           FC+ P T G     +RS+  V++E +            +  N+   +    D +  TF+D
Sbjct: 212 FCLWPQTVGGHRYRTRSVENVLEEVK-----------WIRDNMPEVKEIMFDDD--TFTD 258

Query: 250 LLYSLSEIK---GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306
               + EI    G + + ++ +   ++    +K   +    +  L +  +SG D+IL ++
Sbjct: 259 FKPRVEEIARGLGKLGVTWSCNAKANVPYSTLKIMKE--NGLRLLLVGYESGDDQILLNI 316

Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
            +       R+  +  R +   I I   FI+G PGET +  + T++   +I         
Sbjct: 317 KKGLRTDIARRFSEDCRKL--GIKIHGTFILGLPGETQETIQKTIEYAKEINPHTIQVSL 374

Query: 367 YSPRLGTPGSNMLEQVDEN 385
            +P  GT    + +Q  EN
Sbjct: 375 AAPYPGT---RLYDQAVEN 390


>gi|16081955|ref|NP_394365.1| hypothetical protein Ta0906 [Thermoplasma acidophilum DSM 1728]
 gi|10640183|emb|CAC12035.1| conserved hypothetical protein [Thermoplasma acidophilum]
          Length = 538

 Score = 96.2 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 57/297 (19%), Positives = 110/297 (37%), Gaps = 29/297 (9%)

Query: 74  EKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTY 133
           +    K +  LG     K  ++K      V+V G  A       +     V+ V+  +  
Sbjct: 120 DSWTAKFFRELGE----KVRKLKAKYGFKVIVGGPGAWQVA---MDMPDWVDAVLDGEAE 172

Query: 134 YRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC 193
              PEL+ +    + +    Y    K E +  +             + I  GC + C FC
Sbjct: 173 IDFPELVRKMEKNEPIPKVTYGRMPKVEEIPTIIKPSRFGE-----VQITRGCPRGCQFC 227

Query: 194 -VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLY 252
            + P T     S  +  +V E +  ID+G+  I LL  ++  +  K L        +L  
Sbjct: 228 SITPET---FRSIPIEDIVKEVQLNIDHGITGIELLTDDIMLYGSKKLQVNHEALVNLFT 284

Query: 253 SLSEIKGLVRLRYTTS-----HPRDMSDCLIKAHGDLDVL-MPYLHLPVQSGSDRILKSM 306
           ++ ++ G   + +             +   I    + D        + ++SGS+RI+   
Sbjct: 285 TVKKM-GATHIYFPHISAPGAKSSPKTVEAIAEIAEYDKYPAEAPVVGLESGSERIISKY 343

Query: 307 NR----RHTAYEYRQIIDRIRSVR--PDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
            R      T +++  +I     +     I       +G+P ETD+D   ++ LV+++
Sbjct: 344 MRGKPFPWTPHDWGDVIIDATGIMVDNHIHPCYTMTIGYPDETDEDIEESIKLVERM 400


>gi|78223619|ref|YP_385366.1| radical SAM family protein [Geobacter metallireducens GS-15]
 gi|78194874|gb|ABB32641.1| Radical SAM [Geobacter metallireducens GS-15]
          Length = 475

 Score = 95.8 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 56/317 (17%), Positives = 117/317 (36%), Gaps = 43/317 (13%)

Query: 92  NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIV-NVVVGPQTYYRLPELLERARF----- 145
               ++    + V+ G       EE LR+   V ++V   +  Y   EL E   +     
Sbjct: 89  RRVKEQKPATVTVLTGPHVSVLPEETLRQGEGVIDIVCRGEFDYTTKELCEGREWAKVDG 148

Query: 146 ------GKRVVDTDYSVEDKFERLSIVDGGYNRKRGV---------TAFLTI--QEGCDK 188
                 GK     D       + L  V   Y R   +           +++I    GC  
Sbjct: 149 ISFWKDGKIHHTPDRPPIQDLDALPFVAPVYKRDLPIAEYVIPHFKNPYVSIYSSRGCPS 208

Query: 189 FCTFCVVP--YTRGIEISRSLSQVVDEARKLIDN--GVCEITLLGQNVNAWRGKGLDGEK 244
            C +C+ P  ++     +RS   V +E + ++DN   + E++       A R        
Sbjct: 209 KCIYCLWPQTFSGRAMRTRSPQNVYEEVKWIVDNIPEMRELSFDDDTFTADR-------- 260

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304
                    ++     + + +T +   +     +K   +    + ++ +  ++G+++ILK
Sbjct: 261 ----KHAREVAAKLKPLGISWTINARANCDYETLKIMREAG--LRHVVVGYETGNEQILK 314

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
           ++ +  T  +  +     + +   +++   FI+G PGET D  R T++    +      +
Sbjct: 315 NIKKGVTKEQAIEFTRNCKKL--GLSVHGAFIMGLPGETRDTIRETIEYAKALDLNSIQA 372

Query: 365 FKYSPRLGTPGSNMLEQ 381
              SP  GT   ++  Q
Sbjct: 373 SLASPYPGTEFWDLCRQ 389


>gi|303246017|ref|ZP_07332299.1| Radical SAM domain protein [Desulfovibrio fructosovorans JJ]
 gi|302492800|gb|EFL52668.1| Radical SAM domain protein [Desulfovibrio fructosovorans JJ]
          Length = 495

 Score = 95.8 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 67/407 (16%), Positives = 132/407 (32%), Gaps = 71/407 (17%)

Query: 72  IREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ 131
           + E AA  +   L  +  LK           V+VAG  A    E +L  +P ++     +
Sbjct: 91  VTELAALTLADDLLFLERLKRET-----GCRVLVAGNHATVAAEALLAENPCLDFAAIGE 145

Query: 132 TYYRLPELLERARFGK---------------RVVDT-------DYSVEDKFERLSIVDGG 169
               + +++E    G+                VV+T       D       +R       
Sbjct: 146 YEMTVKDVIEALMAGRGDLSDIQGLVCRKDGHVVNTGRRELLADLDSLPFPDREDFPATI 205

Query: 170 YNRKRGVTAFLTI--QEGCDKFCTFCV---VPYTRGIEISRSLSQVVDEARKLIDN-GVC 223
           Y      +  + I    GC   C +C    + Y      +R   +V +E    I   G  
Sbjct: 206 YPDFTLYSPCINIVSSRGCPCGCVYCQERHIMYASPRYRARDPQKVAEEMEYCIKRFGAK 265

Query: 224 EITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGD 283
           +     Q+            K +    + +  + +GL            +    + A  D
Sbjct: 266 QFYFDDQSFVV---------KKSHVLGICAAIKERGLKIPWTVMGDAMFVDRETLFAMAD 316

Query: 284 LDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGET 343
              +   +   V+S    ILK++ +     + RQ++   R     I   + F +G PGET
Sbjct: 317 AGCI--GMKFGVESADPGILKAIGKPLDLDKCRQVVKWCREC--GIRTHATFCLGLPGET 372

Query: 344 DDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM------------------------L 379
           ++  + ++  ++++    A   K  P  GTP                             
Sbjct: 373 EETIKKSLAFMEELDADTAQVSKAVPYPGTPMYAWASEQGYLVAKDLTSFDGMGSCVVGY 432

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG 426
             +             +++ ++++    +  GQ + +L+E  G+ KG
Sbjct: 433 PDLPAAEIDRWYAIFSRRVAKKKLLKYLSEPGQSLSILME-MGRRKG 478


>gi|297616705|ref|YP_003701864.1| radical SAM protein [Syntrophothermus lipocalidus DSM 12680]
 gi|297144542|gb|ADI01299.1| Radical SAM domain protein [Syntrophothermus lipocalidus DSM 12680]
          Length = 580

 Score = 95.8 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 49/286 (17%), Positives = 86/286 (30%), Gaps = 29/286 (10%)

Query: 102 LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFE 161
            VV+ G       EE L     V  + G  T+  L + L +      V    +    +  
Sbjct: 86  AVVMGGPHVSFMPEEALGHCDYVVRMEGDYTFPALVQCLNQGEIPFEVPGISFVHNGEVI 145

Query: 162 RLSIVDGGYNRKRGVTAF------------LTIQEGCDKFCTFC-VVPYTRGIEISRSLS 208
                D                        +    GC   CTFC V P        RS+ 
Sbjct: 146 HNPAPDWVDIATLPFPHISVFGANRLSTYPVVTSRGCPYDCTFCSVTPMFGHKMRCRSIE 205

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
            +V+E  +       ++  +  N  A               L+ ++ E     R  +   
Sbjct: 206 SIVEELEQY---KGKQVFFVDDNFTAS--------PARAKALMRAMIEKNARPRRWFAQV 254

Query: 269 H-PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
                  D L+    D      Y+++ ++S + + LK+ N+R    +    + R      
Sbjct: 255 RTESARDDELLSLMRDSG--CGYVYVGMESINPKTLKNYNKRQEVSDIEYCVKRFHDY-- 310

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
            I +   F+ G   +T +    T+    K           +P  GT
Sbjct: 311 GIMVHGMFVFGSDEDTAETIEETVSFALKNHIDTVQFMILTPLPGT 356


>gi|288930449|ref|YP_003434509.1| radical SAM protein [Ferroglobus placidus DSM 10642]
 gi|288892697|gb|ADC64234.1| Radical SAM domain protein [Ferroglobus placidus DSM 10642]
          Length = 465

 Score = 95.8 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 58/319 (18%), Positives = 104/319 (32%), Gaps = 35/319 (10%)

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT------------ 132
            R         K   +  V++ G        E LR +  V +  G +T            
Sbjct: 78  KRSLEYVREIKKAFPEKFVILGGVHVTYRPAEGLREADAVCIGEGEKTIVEVAERVESGR 137

Query: 133 --------YYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQE 184
                   ++R  + + R    + + D D      F+ L +    +  +R     +    
Sbjct: 138 SLEGVRGIWWRKDKKIVRNLPREPIFDLDALPFPAFDLLPLNKYSFMERRLEEFPMITSR 197

Query: 185 GCDKFCTFCVVPYTRG-IEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDG 242
           GC   C +CV     G    SRS   VV+E + L D      I                 
Sbjct: 198 GCPFSCLYCVSSKFFGRRYRSRSAENVVEEMKWLEDEFNAKHIAFSDDTFTLS------- 250

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
            K     +   + E +G+       S    +   L++           ++  V+S S+RI
Sbjct: 251 -KKRVESICEKIKE-EGVDLTWSCASRADTIDRELVRIMKRAG--CTRMYFGVESASERI 306

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           L    ++       + I   +     I     FI+G P E++++ + T+ L  K+    A
Sbjct: 307 LNFYRKKLDIKAVERAIRICKE--EGIETVCSFIIGAPDESEEEMKRTLKLAMKLDPDYA 364

Query: 363 FSFKYSPRLGTPGSNMLEQ 381
                +P  GT    + E+
Sbjct: 365 QFSILTPYPGTELYEIAEK 383


>gi|162453798|ref|YP_001616165.1| hypothetical protein sce5522 [Sorangium cellulosum 'So ce 56']
 gi|161164380|emb|CAN95685.1| hypothetical protein predicted by Glimmer/Critica [Sorangium
           cellulosum 'So ce 56']
          Length = 476

 Score = 95.8 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 59/292 (20%), Positives = 106/292 (36%), Gaps = 18/292 (6%)

Query: 101 LLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKF 160
           + VV  G       EE L+    V+VVV  +     P +L     G +     +      
Sbjct: 83  VRVVAGGPHVSYWIEEALQ---HVDVVVTGEAEAVWPSVLRDLARGTQRR-VYHGEPTSL 138

Query: 161 ERLSIVDGGYNRKRGVTAFL-TIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLID 219
             L         +R +   +     GC   C+FC VP        R + +V+ +      
Sbjct: 139 AGLPTPRYDLLEERFLVPRVLQATRGCPFTCSFCTVPDLNPGFRVRPVDEVIRDIATTHF 198

Query: 220 NGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIK 279
               +     + V  +    L  ++    +LL  L+ +          S        L+ 
Sbjct: 199 PRFWQ-----EKVAWFWDDNLLVQRRWAKELLRELAGLDRWW--LTQASIDIVKDRELLD 251

Query: 280 AHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE-YRQIIDRIRSVRPDIAISSDFIVG 338
           A      +   + L ++S  +  LKS+++R      YR+ I ++      I + + FI G
Sbjct: 252 AMERSGCI--GIFLGIESLDEADLKSVDKRQNRAREYREAIRKLHDR--GICVMAGFISG 307

Query: 339 FPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER 390
           F  +T +   +T D +++IG    F    +P  GTP  +   + D  +  ER
Sbjct: 308 FDDQTPEVIASTADRLNEIGVDVPFLSILTPFRGTPLYD-EHRRDGRILEER 358


>gi|149201068|ref|ZP_01878043.1| Magnesium-protoporphyrin IX monomethylester oxidative cyclase, 66
           kDa subunit(bchE) [Roseovarius sp. TM1035]
 gi|149145401|gb|EDM33427.1| Magnesium-protoporphyrin IX monomethylester oxidative cyclase, 66
           kDa subunit(bchE) [Roseovarius sp. TM1035]
          Length = 553

 Score = 95.8 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 64/388 (16%), Positives = 115/388 (29%), Gaps = 68/388 (17%)

Query: 43  RMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR---------------- 86
            +       GY  V  +D           +     +       R                
Sbjct: 28  YLAGHLRDAGYTDVTFID----------AMTNHLDDDSLRARLRDLNPDVVGVTAITPSI 77

Query: 87  --IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
               N+     +   D L V+ G  A    +++L  +P V+V+V  +       L+  A 
Sbjct: 78  YVAENILKLAQEVVPDALRVLGGVHATFMYKQVLSEAPWVDVIVRGEGEEIFLNLIRAAD 137

Query: 145 FGK----------------------RVVDTDYSVEDKFERLSIVDGG---YNRKRGVTAF 179
            G                           T   ++      S+++     Y       A 
Sbjct: 138 SGHWLGKRKSIKGLAYLDGETITATPAASTVKDLDAINPDWSLLEWEKYIYVPLGKRVAI 197

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
             +  GC   C+FC           R   +VVDE   L++N      +L           
Sbjct: 198 PNMARGCPFTCSFCSQWKFWRDYRVRDPKKVVDEIENLVNNHGVGFFILADEEPTI---- 253

Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP---RDMSDCLIKAHGDLDVLMPYLHLPVQ 296
               K  F      L       R+++  +           L+K +    ++  ++ L  +
Sbjct: 254 ---NKKKFVQFCEELIARDLPRRVQWGINTRVTDIYRDRDLLKFYRKAGLV--HVSLGTE 308

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
           + +   L   N+  T  + ++ I  +R    DI   + FIVG   ET +    T  +   
Sbjct: 309 AAAQLKLDQFNKETTVAQNKEAIQLLREA--DIFTEAQFIVGLDNETPETLEETFQMAWD 366

Query: 357 IGYAQAFSFKYSPRLGTPGS-NMLEQVD 383
                A    Y+P   TP    + +QV+
Sbjct: 367 WQPDLANWAMYTPWPFTPLFQELRDQVE 394


>gi|318087552|gb|ADV40366.1| CDK5 regulatory subunit associated protein 1, isoform CRA_a
           [Latrodectus hesperus]
          Length = 174

 Score = 95.8 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 26/88 (29%), Positives = 50/88 (56%), Gaps = 2/88 (2%)

Query: 25  QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
           ++ ++++YGCQMNV D+  +  +    GYE    ++D D+I++ TC IRE A +K+++ L
Sbjct: 87  KKVYIETYGCQMNVNDTEIIYAILSKDGYEISKEINDTDVILIMTCAIREGAEQKIWNRL 146

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQA 112
                      ++   L + + GC+A+ 
Sbjct: 147 K--HLKSLKLKRKRQPLKIGILGCMAER 172


>gi|196229207|ref|ZP_03128072.1| Radical SAM domain protein [Chthoniobacter flavus Ellin428]
 gi|196226439|gb|EDY20944.1| Radical SAM domain protein [Chthoniobacter flavus Ellin428]
          Length = 475

 Score = 95.4 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 64/339 (18%), Positives = 113/339 (33%), Gaps = 40/339 (11%)

Query: 48  FFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAG 107
              +G   V    +ADLI L    +    A + Y      R            + VV+ G
Sbjct: 69  LIDEGIANVPLDLEADLIGL---TVITGTARRAYELADHFRA---------RGITVVLGG 116

Query: 108 CVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG--KRVVDTDYSVEDKFERLSI 165
                  E+     P  + VV        PELL     G  K++      ++      + 
Sbjct: 117 PHVTLIPED---ADPHADAVVVGYAEDTWPELLRDFMRGCLKKLYRQAPGLDLAGRPFAR 173

Query: 166 VDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ-VVDEARKLIDNGVCE 224
            +   +R+   +       GC   C FCVVP   G    +   + VV+    +   G  +
Sbjct: 174 RELLPSRRYLTSDVFEATRGCVHSCDFCVVPTAWGR---KPWQKPVVEVVADIRQQGARK 230

Query: 225 ITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPR--DMSDCLIKAHG 282
           +  +  N+ A RG  L+                    RL++             L++   
Sbjct: 231 LIFVDLNLIAHRGYALELFTALIPL------------RLQWYGLATVLLADDPELLELAA 278

Query: 283 DLDVLMPYLHLPVQSGSDRILKSMNRR-HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPG 341
                   L + ++S S   L+  ++  +T  +Y ++++R+ +    IA+   F+ G   
Sbjct: 279 RSG--CKGLLMGLESISTTNLRQNHKGFNTPEDYGRVVERLHAQ--GIALQGCFVFGLDD 334

Query: 342 ETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           +  D F  T     + G         +P   TP    LE
Sbjct: 335 DRPDVFLKTARFAVEAGIDLPRFAVVTPFPNTPLYKRLE 373


>gi|39996252|ref|NP_952203.1| oxidative cyclase-related protein [Geobacter sulfurreducens PCA]
 gi|39983132|gb|AAR34526.1| oxidative cyclase-related protein [Geobacter sulfurreducens PCA]
 gi|298505265|gb|ADI83988.1| oxidative cyclase-related protein [Geobacter sulfurreducens KN400]
          Length = 475

 Score = 95.4 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 58/346 (16%), Positives = 123/346 (35%), Gaps = 53/346 (15%)

Query: 63  DLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSP 122
           D++V+ T         +    +   +             + V+ G       EE LR+  
Sbjct: 70  DMVVMYTSTPTLSLDIETAHRIKERK----------PATVTVLTGPHVTVLPEESLRQGE 119

Query: 123 IV-NVVVGPQTYYRLPELLER-----------ARFGKRVVDTDYSVEDKFERLSIVDGGY 170
            V ++V   +  Y   EL E             + G      D       + L  V   Y
Sbjct: 120 GVIDIVCRGEFDYTTKELCEGREWEKVDGISFWKNGAIHHTPDRPPIQDLDALPFVAPVY 179

Query: 171 NRKRGV---------TAFLTI--QEGCDKFCTFCVVP--YTRGIEISRSLSQVVDEARKL 217
            R   +           +++I    GC   C +C+ P  ++     +RS   V +E + +
Sbjct: 180 KRDLPIAEYVIPHFKNPYVSIYSSRGCPSKCIYCLWPQTFSGRAMRTRSPQNVYEEVKWI 239

Query: 218 IDN--GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSD 275
           +DN   + E++       A R                 ++     + + +T +   +   
Sbjct: 240 VDNIPEMRELSFDDDTFTADRRH------------AREVAAKLKPLGISWTINARANCDY 287

Query: 276 CLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDF 335
             +K   +    + ++ +  ++G+++ILK++ +  T  +  +     + +   +++   F
Sbjct: 288 ETLKIMREAG--LRHVVVGYETGNEQILKNIKKGVTKEQAIEFTRNCKKL--GLSVHGAF 343

Query: 336 IVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I+G PGET D  R T++    +      +   SP  GT   ++  Q
Sbjct: 344 IMGLPGETRDTIRETIEFAKALDLNSIQASLASPYPGTEFWDLCRQ 389


>gi|83718703|ref|YP_442299.1| radical SAM domain-containing protein [Burkholderia thailandensis
           E264]
 gi|83652528|gb|ABC36591.1| radical SAM domain protein [Burkholderia thailandensis E264]
          Length = 503

 Score = 95.4 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 67/360 (18%), Positives = 131/360 (36%), Gaps = 58/360 (16%)

Query: 54  ERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAE 113
           E +    D DL++++T              L +++            +LV + G     +
Sbjct: 91  ETLKIAKDYDLVIIHTSTPSFPTDAMFAEDLKKMK----------PSMLVGMVGAKVAVD 140

Query: 114 GEEILRRSPIVNVVVGPQTYYRLPELLE------------RARFGKRVVDTDYSVEDKFE 161
               L  +  ++ V   +  Y   ++ E            RA+ G    +    + +  +
Sbjct: 141 PHNSLTATQAIDFVCREEFDYTCKDIAEGKPFAEILGMSYRAKDGSIEHNGPRPMIENMD 200

Query: 162 RLSIVDGGYNRKRGV---------TAFLTI--QEGCDKFCTFCVVPYTRGIEISR--SLS 208
            L  V   Y R   +           +++I    GC   CTFC+ P T G    R  S+ 
Sbjct: 201 ELPFVAPVYKRDLKIDNYFIGYLNYPYVSIYTGRGCRSKCTFCLWPQTVGGHRYRVRSVE 260

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK---GLVRLRY 265
            V+ E +            +  N+   +    D +  TF+D    + EI    G + + +
Sbjct: 261 SVLAEVK-----------WIRDNMPEVKEIMFDDD--TFTDFKPRVEEIARGLGKLGVTW 307

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
           + +   ++    +K   +    +  L +  +SG D+IL ++ +       R+  +  + +
Sbjct: 308 SCNAKANVPYSTLKIMKE--NGLRLLLVGYESGDDQILLNIKKGLRTDIARRFNEDCKKL 365

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
              I I   FI+G PGET +  + T++   +I          +P  GT    +  Q  EN
Sbjct: 366 --GIKIHGTFILGLPGETKETIKKTIEYAKEINPHTIQVSLAAPYPGT---RLYNQAIEN 420


>gi|148261268|ref|YP_001235395.1| magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative
           cyclase [Acidiphilium cryptum JF-5]
 gi|146402949|gb|ABQ31476.1| magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative
           cyclase [Acidiphilium cryptum JF-5]
          Length = 520

 Score = 95.4 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 69/386 (17%), Positives = 131/386 (33%), Gaps = 64/386 (16%)

Query: 43  RMEDMFFSQGYE-------RVNSM-DDA--DLI------VLNTCHIREKAAEKVYSFLGR 86
            +     S G+          N + DDA  D++      ++ +  I           + +
Sbjct: 28  YIAGALKSAGFTDLRFIDAMTNDLSDDALRDILRAERPDIIGSTAITPS--------IYK 79

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
              L     +E    L V+ G  A     ++L  +P ++V+V  +    + +L      G
Sbjct: 80  AERLLKIAREEHPGALTVLGGVHATFMYGQVLAEAPWIDVIVRGEGEGIIVDLARAVAAG 139

Query: 147 K-----------------RVVDTDYSVEDK-----FERLSIVDGGYNRKRGVTAFLTI-- 182
                             +VV T+ +   K         SI+D    R   +   + I  
Sbjct: 140 NFAATRHDIRGIAFREAGKVVATEAAPTVKDLDALAPDWSILDWDRYRYIPLGTRVAIPN 199

Query: 183 -QEGCDKFCTFCVVPYTRGIEISRSLSQVV-DEARKLIDNGVCEITLLGQNVNAWRGKGL 240
              GC   C+FC           R  S+VV +  R   ++GV    L  +     R K +
Sbjct: 200 MARGCPFTCSFCSQWKFWRDYRYRDPSKVVDEIVRLRDEHGVGFFILADEEPTINRKKFV 259

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300
                  +     ++   GL+    T        + L+  +    ++  ++ L  ++ + 
Sbjct: 260 -------AFCEELIARDVGLLWGINTRVTDILRDEALLPLYRRAGLI--HVSLGTEAAAQ 310

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
             L   N+  T  + R+ I  +R+    I + + FIVG   ET +    T  +       
Sbjct: 311 MKLDRFNKETTIEQNRKAIALLRAA--GIVVEAQFIVGLENETRETLEETYRMARDWAPD 368

Query: 361 QAFSFKYSPRLGTPGSNMLEQVDENV 386
            A    Y+P    P S++   + + V
Sbjct: 369 LANWSMYTPW---PFSDLFRDLADKV 391


>gi|218780005|ref|YP_002431323.1| radical SAM domain protein [Desulfatibacillum alkenivorans AK-01]
 gi|218761389|gb|ACL03855.1| Radical SAM domain protein [Desulfatibacillum alkenivorans AK-01]
          Length = 468

 Score = 95.4 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 60/314 (19%), Positives = 110/314 (35%), Gaps = 42/314 (13%)

Query: 95  IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG-------- 146
            K      +++ G  A A  +E L + P  + ++  +    LP L +    G        
Sbjct: 87  KKAAPQCKLILGGPHATAVPKECLDQFPKADFILTGEAEDSLPMLCQAIETGDRLEAIPG 146

Query: 147 -------------KRVVDTDYSVEDKFERLSIVDGGYNR------KRGVTAFLTIQEGCD 187
                        K V    +++    + L+       R      ++     L    GC 
Sbjct: 147 LYFRKEGAIVQGPKHVFPDVHAIPWPAKDLAARAYEKKRYHSLLVRKRPVDTLFTSRGCP 206

Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTF 247
             C FC     R    +R    VV E   + D G+ ++ +             D     F
Sbjct: 207 FSCGFCY--NFRKHYRARKPEDVVQELAAIRDRGIRDVEICDDTFTVN----EDRALAIF 260

Query: 248 SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307
             ++    +I   ++ R         ++ L KA     V +  +   ++SGS +IL +MN
Sbjct: 261 DLIVKERLDISFRIKSRV-----DVFTEKLAKAGKKAGVYL--VAFGMESGSQKILDAMN 313

Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           ++ T  +  +     +     IA  S +++G+PGET D    T+  + K   A A     
Sbjct: 314 KKITLAQSAEACRLTKKY--GIAAHSSWVIGYPGETPDTVEDTVRFILKNKPATANLAVL 371

Query: 368 SPRLGTPGSNMLEQ 381
            P   TP   + ++
Sbjct: 372 RPYPNTPAYEIAKE 385


>gi|85706420|ref|ZP_01037514.1| Magnesium-protoporphyrin IX monomethylester oxidative cyclase,
           66kDa subunit (bchE) [Roseovarius sp. 217]
 gi|85669193|gb|EAQ24060.1| Magnesium-protoporphyrin IX monomethylester oxidative cyclase,
           66kDa subunit (bchE) [Roseovarius sp. 217]
          Length = 553

 Score = 95.4 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 58/314 (18%), Positives = 102/314 (32%), Gaps = 40/314 (12%)

Query: 99  GDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK----------- 147
              L V+ G  A    +++L  +P V+V+V  +       L+  A  GK           
Sbjct: 92  PGALRVLGGVHATFMYKQVLSEAPWVDVIVRGEGEEIFLNLIRAADSGKWLETRKSIKGL 151

Query: 148 --------------RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC 193
                           V    +++  +  L      Y       A   +  GC   C+FC
Sbjct: 152 AYFDGDTITATPAAPTVKDLDAIDPDWSLLEWEKYIYVPLGKRVAIPNMARGCPFTCSFC 211

Query: 194 VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS 253
                      R   +VVDE   L++N      +L               K  F      
Sbjct: 212 SQWKFWRDYRVRDPKKVVDEIENLVNNHGVGFFILADEEPTI-------NKKKFVQFCEE 264

Query: 254 LSEIKGLVRLRYTTSHP---RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
           L       R+++  +           L+K +    ++  ++ L  ++ +   L   N+  
Sbjct: 265 LIARDLPRRVQWGINTRVTDIYRDRDLLKFYRKAGLV--HVSLGTEAAAQLKLDQFNKET 322

Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370
           T  + ++ I  +R    DI   + FIVG   ET +    T  +        A    Y+P 
Sbjct: 323 TVAQNKKAIQLLREA--DIFTEAQFIVGLDNETPETLEETFQMAWDWQPDLANWAMYTPW 380

Query: 371 LGTPGS-NMLEQVD 383
             TP    + +QV+
Sbjct: 381 PFTPLFQELRDQVE 394


>gi|326404680|ref|YP_004284762.1| magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative
           cyclase [Acidiphilium multivorum AIU301]
 gi|325051542|dbj|BAJ81880.1| magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative
           cyclase [Acidiphilium multivorum AIU301]
          Length = 520

 Score = 95.4 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 69/386 (17%), Positives = 131/386 (33%), Gaps = 64/386 (16%)

Query: 43  RMEDMFFSQGYE-------RVNSM-DDA--DLI------VLNTCHIREKAAEKVYSFLGR 86
            +     S G+          N + DDA  D++      ++ +  I           + +
Sbjct: 28  YIAGALKSAGFTDLRFIDAMTNDLSDDALRDILRAERPDIIGSTAITPS--------IYK 79

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
              L     +E    L V+ G  A     ++L  +P ++V+V  +    + +L      G
Sbjct: 80  AERLLKIAREEHPGALTVLGGVHATFMYGQVLAEAPWIDVIVRGEGEGIIVDLARAVAAG 139

Query: 147 K-----------------RVVDTDYSVEDK-----FERLSIVDGGYNRKRGVTAFLTI-- 182
                             +VV T+ +   K         SI+D    R   +   + I  
Sbjct: 140 NFAATRHDIRGIAFREAGKVVATEAAPTVKDLDALAPDWSILDWDRYRYIPLGTRVAIPN 199

Query: 183 -QEGCDKFCTFCVVPYTRGIEISRSLSQVV-DEARKLIDNGVCEITLLGQNVNAWRGKGL 240
              GC   C+FC           R  S+VV +  R   ++GV    L  +     R K +
Sbjct: 200 MARGCPFTCSFCSQWKFWRDYRYRDPSKVVDEIVRLRDEHGVGFFILADEEPTINRKKFV 259

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300
                  +     ++   GL+    T        + L+  +    ++  ++ L  ++ + 
Sbjct: 260 -------AFCEELIARDVGLLWGINTRVTDILRDEALLPLYRRAGLI--HVSLGTEAAAQ 310

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
             L   N+  T  + R+ I  +R+    I + + FIVG   ET +    T  +       
Sbjct: 311 MKLDRFNKETTIEQNRKAIALLRAA--GIVVEAQFIVGLENETRETLEETYRMARDWAPD 368

Query: 361 QAFSFKYSPRLGTPGSNMLEQVDENV 386
            A    Y+P    P S++   + + V
Sbjct: 369 LANWSMYTPW---PFSDLFRDLADKV 391


>gi|260890902|ref|ZP_05902165.1| BchE/P-methylase family protein [Leptotrichia hofstadii F0254]
 gi|260859455|gb|EEX73955.1| BchE/P-methylase family protein [Leptotrichia hofstadii F0254]
          Length = 444

 Score = 95.4 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 51/323 (15%), Positives = 109/323 (33%), Gaps = 37/323 (11%)

Query: 54  ERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAE 113
           E +N  ++ DL+V+    +    A++ Y    + +      +  G    V    C+    
Sbjct: 51  EFINYEENTDLVVI---SVETYTAKRAYEIAKKFQKRGIKVLAGGYHPTVEPDECL---- 103

Query: 114 GEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRK 173
                      + ++         ++L   R  K  ++  Y        +       +RK
Sbjct: 104 --------EHFDSIILGNAESVWTKMLNDLRKNK--LEKRYYGVTTSFAMPDRSIYKDRK 153

Query: 174 RGVTAFLTIQEGCDKFCTFCVV-PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNV 232
               A +    GC+  C FC +  Y       R + ++V + +   ++G   +  +  N 
Sbjct: 154 YSPLALIETGRGCNFACDFCAIHSYYEKKYFRRPIEEIVQDIK---NSGKKYVFFIDDNF 210

Query: 233 NAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLH 292
            A     ++  K      +  +++           +     +D L+            + 
Sbjct: 211 VADHKHAIEICKAIAPLNIKWVTQ----------GAITIAKNDELLYWMKKSG--CKMIL 258

Query: 293 LPVQSGSDRILKSMNRRHT--AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
           +  +S +  ILK M +       E  ++ ++I S    I I + F+ G+  +T + F  T
Sbjct: 259 IGYESMNPNILKDMGKGWRSGVGEINELTEKIHSY--GIGIYATFVFGYGNDTKETFDET 316

Query: 351 MDLVDKIGYAQAFSFKYSPRLGT 373
           +    K G+  A      P   T
Sbjct: 317 VKFAKKHGFYFAAFNHLVPFPKT 339


>gi|167619276|ref|ZP_02387907.1| radical SAM domain protein [Burkholderia thailandensis Bt4]
          Length = 481

 Score = 95.4 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 67/360 (18%), Positives = 131/360 (36%), Gaps = 58/360 (16%)

Query: 54  ERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAE 113
           E +    D DL++++T              L +++            +LV + G     +
Sbjct: 69  ETLKIAKDYDLVIIHTSTPSFPTDAMFAEDLKKMK----------PSMLVGMVGAKVAVD 118

Query: 114 GEEILRRSPIVNVVVGPQTYYRLPELLE------------RARFGKRVVDTDYSVEDKFE 161
               L  +  ++ V   +  Y   ++ E            RA+ G    +    + +  +
Sbjct: 119 PHNSLTATQAIDFVCREEFDYTCKDIAEGKPFAEILGMSYRAKDGSIEHNGPRPMIENMD 178

Query: 162 RLSIVDGGYNRKRGV---------TAFLTI--QEGCDKFCTFCVVPYTRGIEISR--SLS 208
            L  V   Y R   +           +++I    GC   CTFC+ P T G    R  S+ 
Sbjct: 179 ELPFVAPVYKRDLKIDNYFIGYLNYPYVSIYTGRGCRSKCTFCLWPQTVGGHRYRVRSVE 238

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK---GLVRLRY 265
            V+ E +            +  N+   +    D +  TF+D    + EI    G + + +
Sbjct: 239 SVLAEVK-----------WIRDNMPEVKEIMFDDD--TFTDFKPRVEEIARGLGKLGVTW 285

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
           + +   ++    +K   +    +  L +  +SG D+IL ++ +       R+  +  + +
Sbjct: 286 SCNAKANVPYSTLKIMKE--NGLRLLLVGYESGDDQILLNIKKGLRTDIARRFNEDCKKL 343

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
              I I   FI+G PGET +  + T++   +I          +P  GT    +  Q  EN
Sbjct: 344 --GIKIHGTFILGLPGETKETIKKTIEYAKEINPHTIQVSLAAPYPGT---RLYNQAIEN 398


>gi|298504362|gb|ADI83085.1| cobalamin-binding radical SAM domain iron-sulfur cluster-binding
           oxidoreductase [Geobacter sulfurreducens KN400]
          Length = 428

 Score = 95.4 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 51/292 (17%), Positives = 96/292 (32%), Gaps = 29/292 (9%)

Query: 88  RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147
           R  + +       + VV+ G       +E L      + VV  +       LL+    G+
Sbjct: 73  RAYEIADRFRARGVPVVMGGIHPTVLPDEAL---EHADAVVVGEAEPVWAHLLDDLLAGR 129

Query: 148 RVVDTDYSVEDKFERLSIVDGGYN-----RKRGVTAFLTIQEGCDKFCTFC-VVPYTRGI 201
             +   Y      + +             R+   T  +    GC   C+FC V PY    
Sbjct: 130 --LAPVYRAPVPTDEILSAPWPRREILAGRRYLTTQTVQASRGCPYDCSFCTVTPYFGRT 187

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
              R    ++ E R         +  L  N+         G+      +L  L+E+   V
Sbjct: 188 FRYRDPDDILAEIRSFRR---KLVVFLDDNLL--------GDPIKARPILRGLAEMD--V 234

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R    T+        L+K   D   +  ++ +   +GS   +     R++      ++ R
Sbjct: 235 RWGSQTNLRFAEDPELLKLVADSGCIGLFVGIESVTGSHANMAKSGTRYSQ---TDLMKR 291

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
           +R     I + +  I GF    +  F  T+  +++   +       +P  GT
Sbjct: 292 VRDA--GIILETSIIFGFDDHDESVFETTLRFLEECSPSVPTFHILTPYPGT 341


>gi|254166689|ref|ZP_04873543.1| radical SAM domain protein [Aciduliprofundum boonei T469]
 gi|289596366|ref|YP_003483062.1| Radical SAM domain protein [Aciduliprofundum boonei T469]
 gi|197624299|gb|EDY36860.1| radical SAM domain protein [Aciduliprofundum boonei T469]
 gi|289534153|gb|ADD08500.1| Radical SAM domain protein [Aciduliprofundum boonei T469]
          Length = 459

 Score = 95.4 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 50/308 (16%), Positives = 100/308 (32%), Gaps = 42/308 (13%)

Query: 92  NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVD 151
            +  K   ++ +V+ G       E   +  P ++ +V  +      EL++     +   +
Sbjct: 84  KTAKKLNENVKIVMGGPHVTFTPERTFKECPCIDYIVRGEGELTFKELVDTLDKNRDPSN 143

Query: 152 T---------------DYSVEDKFERLSIVDGGYNRKRGVTA------FLTIQEGCDKFC 190
                              +    + + I            A       +    GC   C
Sbjct: 144 ILGLSINMGDKVKNNLARPLIKDVDSIPIPSYDLLPMDRYQADGVKFGTIMTSRGCPFNC 203

Query: 191 TFCVV-----PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
            FC          RG   SR + + +   R+  + G  EI  L               + 
Sbjct: 204 AFCSSSLQFGKRWRGHSDSRVIEE-LKILRE--EYGRKEIEFLDDTFT--------LNRP 252

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
               +   + + +GL      +S     ++ +  A          ++  ++SGS + L  
Sbjct: 253 RAIRISKMIRK-EGLDISWTASSRVDIFTNEVADALKYGG--CHTVYFGIESGSQKTLDF 309

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           + +R T  +    + + R+ +        FI+GFP ET +D + T+    K+G   A   
Sbjct: 310 IGKRITPEQSLAAVKKARAHKLHAL--GAFIIGFPEETKEDIKKTIKFSKKVGVDYAQFT 367

Query: 366 KYSPRLGT 373
             +P  GT
Sbjct: 368 VATPYPGT 375


>gi|124384313|ref|YP_001028798.1| radical SAM domain-containing protein [Burkholderia mallei NCTC
           10229]
 gi|126441620|ref|YP_001059761.1| radical SAM domain-containing protein [Burkholderia pseudomallei
           668]
 gi|126452682|ref|YP_001067047.1| radical SAM domain-containing protein [Burkholderia pseudomallei
           1106a]
 gi|134277795|ref|ZP_01764510.1| radical SAM domain protein [Burkholderia pseudomallei 305]
 gi|167720509|ref|ZP_02403745.1| radical SAM domain protein [Burkholderia pseudomallei DM98]
 gi|167739502|ref|ZP_02412276.1| radical SAM domain protein [Burkholderia pseudomallei 14]
 gi|167903583|ref|ZP_02490788.1| radical SAM domain protein [Burkholderia pseudomallei NCTC 13177]
 gi|167911830|ref|ZP_02498921.1| radical SAM domain protein [Burkholderia pseudomallei 112]
 gi|167919830|ref|ZP_02506921.1| radical SAM domain protein [Burkholderia pseudomallei BCC215]
 gi|217420930|ref|ZP_03452435.1| radical SAM domain protein [Burkholderia pseudomallei 576]
 gi|226199995|ref|ZP_03795545.1| radical SAM domain protein [Burkholderia pseudomallei Pakistan 9]
 gi|237813155|ref|YP_002897606.1| hopanoid biosynthesis associated radical SAM protein HpnJ
           [Burkholderia pseudomallei MSHR346]
 gi|242314748|ref|ZP_04813764.1| radical SAM domain protein [Burkholderia pseudomallei 1106b]
 gi|254178281|ref|ZP_04884936.1| radical SAM domain protein [Burkholderia mallei ATCC 10399]
 gi|254184244|ref|ZP_04890834.1| radical SAM domain protein [Burkholderia pseudomallei 1655]
 gi|254195761|ref|ZP_04902187.1| radical SAM domain protein [Burkholderia pseudomallei S13]
 gi|254199264|ref|ZP_04905630.1| radical SAM domain protein [Burkholderia mallei FMH]
 gi|254205573|ref|ZP_04911925.1| radical SAM domain protein [Burkholderia mallei JHU]
 gi|254260638|ref|ZP_04951692.1| radical SAM domain protein [Burkholderia pseudomallei 1710a]
 gi|254296905|ref|ZP_04964358.1| radical SAM domain protein [Burkholderia pseudomallei 406e]
 gi|254357738|ref|ZP_04974011.1| radical SAM domain protein [Burkholderia mallei 2002721280]
 gi|126221113|gb|ABN84619.1| radical SAM domain protein [Burkholderia pseudomallei 668]
 gi|126226324|gb|ABN89864.1| radical SAM domain protein [Burkholderia pseudomallei 1106a]
 gi|134251445|gb|EBA51524.1| radical SAM domain protein [Burkholderia pseudomallei 305]
 gi|147748860|gb|EDK55934.1| radical SAM domain protein [Burkholderia mallei FMH]
 gi|147753016|gb|EDK60081.1| radical SAM domain protein [Burkholderia mallei JHU]
 gi|148026865|gb|EDK84886.1| radical SAM domain protein [Burkholderia mallei 2002721280]
 gi|157807494|gb|EDO84664.1| radical SAM domain protein [Burkholderia pseudomallei 406e]
 gi|160699320|gb|EDP89290.1| radical SAM domain protein [Burkholderia mallei ATCC 10399]
 gi|169652506|gb|EDS85199.1| radical SAM domain protein [Burkholderia pseudomallei S13]
 gi|184214775|gb|EDU11818.1| radical SAM domain protein [Burkholderia pseudomallei 1655]
 gi|217396342|gb|EEC36359.1| radical SAM domain protein [Burkholderia pseudomallei 576]
 gi|225928051|gb|EEH24088.1| radical SAM domain protein [Burkholderia pseudomallei Pakistan 9]
 gi|237503756|gb|ACQ96074.1| hopanoid biosynthesis associated radical SAM protein HpnJ
           [Burkholderia pseudomallei MSHR346]
 gi|242137987|gb|EES24389.1| radical SAM domain protein [Burkholderia pseudomallei 1106b]
 gi|254219327|gb|EET08711.1| radical SAM domain protein [Burkholderia pseudomallei 1710a]
          Length = 481

 Score = 95.0 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 67/367 (18%), Positives = 134/367 (36%), Gaps = 61/367 (16%)

Query: 50  SQGYERVNSMDDA---DLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVA 106
           + G    +++  A   DL++++T              L +++            +LV + 
Sbjct: 62  ADGLSVEDTLKIAKDYDLVIIHTSTPSFPTDAMFAEDLKKMK----------PSMLVGMV 111

Query: 107 GCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE------------RARFGKRVVDTDY 154
           G     +    L  +  ++ V   +  Y   ++ E            RA+ G    +   
Sbjct: 112 GAKVAVDPHNSLTATQAIDFVCREEFDYTCKDIAEGKPFAEILGMSYRAKDGSIEHNGPR 171

Query: 155 SVEDKFERLSIVDGGYNRKRGV---------TAFLTI--QEGCDKFCTFCVVPYTRGIEI 203
            + +  + L  V   Y R   +           +++I    GC   CTFC+ P T G   
Sbjct: 172 PMIENMDELPFVAPVYKRDLKIDNYFIGYLNYPYVSIYTGRGCRSKCTFCLWPQTVGGHR 231

Query: 204 SR--SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK--- 258
            R  S+  V+ E +            +  N+   +    D +  TF+D    + EI    
Sbjct: 232 YRVRSVESVLAEVK-----------WIRDNMPEVKEIMFDDD--TFTDFKPRVEEIARGL 278

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           G + + ++ +   ++    +K   +    +  L +  +SG D+IL ++ +       R+ 
Sbjct: 279 GKLGVTWSCNAKANVPYSTLKIMKE--NGLRLLLVGYESGDDQILLNIKKGLRTDIARRF 336

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
            +  + +   I I   FI+G PGET +  + T++   +I          +P  GT    +
Sbjct: 337 NEDCKKL--GIKIHGTFILGLPGETKETIKKTIEYAKEINPHTIQVSLAAPYPGT---RL 391

Query: 379 LEQVDEN 385
             Q  EN
Sbjct: 392 YNQAIEN 398


>gi|305662552|ref|YP_003858840.1| Radical SAM domain protein [Ignisphaera aggregans DSM 17230]
 gi|304377121|gb|ADM26960.1| Radical SAM domain protein [Ignisphaera aggregans DSM 17230]
          Length = 549

 Score = 95.0 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 61/305 (20%), Positives = 121/305 (39%), Gaps = 29/305 (9%)

Query: 187 DKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL------ 240
              C +C VP   G   SR   ++V E   L+  G   I L   +     G+ L      
Sbjct: 237 PPGCGYCNVPMIHGFPRSRDPYKIVSEVEALLKLGATRIVLSAPDF-LDYGRELLVNGPL 295

Query: 241 ------DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY---- 290
                          LL  +++I  +++   T S    +  CLI  +   ++L  Y    
Sbjct: 296 TDPCYPPPNIDMIEHLLQMITKIPKIMKGEATVSIEN-VKACLIDEYVA-EILGKYLRDT 353

Query: 291 -LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
            +++ ++S SD++L+ + R     +  + I+ +      +      + G P ET +D   
Sbjct: 354 AIYIGLESCSDKLLELIGRPSKCRDTLRAIELLSKY--GLRPYVYLMYGIPLETREDIDI 411

Query: 350 TMDLVDKIGYA---QAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFN 406
           T+ ++D   ++   +   +K+ P   TP   +L  V+       +  L +K++E      
Sbjct: 412 TIKMLDDPIFSYVERIVLYKFRPLPYTPLEKILN-VNTYTNNGIIKQLYEKVKEFNTQKK 470

Query: 407 DACVGQIIEVLIEK-HGKEKGKLVGR-SPWLQSVVLNSKNHNIGDIIKVRITDVKISTLY 464
              + + I+V+I   + ++   LV          ++ +    IG I  VRIT +    + 
Sbjct: 471 RHMLYRKIDVIIASTYNRDPRYLVAYPLKHGPVTLIKTAKRFIGYIATVRITKIISDRMV 530

Query: 465 -GELV 468
            GE++
Sbjct: 531 LGEII 535


>gi|270622238|ref|ZP_06221893.1| Fe-S oxidoreductase [Haemophilus influenzae HK1212]
 gi|270317708|gb|EFA29111.1| Fe-S oxidoreductase [Haemophilus influenzae HK1212]
          Length = 128

 Score = 95.0 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 37/103 (35%), Positives = 55/103 (53%), Gaps = 3/103 (2%)

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
               L   L ++   VRL Y   +P       + A G    L+PYL +P+Q  S +ILK+
Sbjct: 23  DLMTLCKQLGKLGIWVRLHYVYPYPHVDDLIPLMADGT---LLPYLDIPLQHASPKILKA 79

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFR 348
           M R  +     + I + R + PD+ + S FIVGFPGET++DF+
Sbjct: 80  MKRPGSIDRTLERIKQWREICPDLTLRSTFIVGFPGETEEDFQ 122


>gi|160881694|ref|YP_001560662.1| radical SAM domain-containing protein [Clostridium phytofermentans
           ISDg]
 gi|160430360|gb|ABX43923.1| Radical SAM domain protein [Clostridium phytofermentans ISDg]
          Length = 461

 Score = 95.0 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 59/335 (17%), Positives = 121/335 (36%), Gaps = 46/335 (13%)

Query: 73  REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT 132
                E     +   + +K           V + GC    E E+ L    +V++V   + 
Sbjct: 75  ISTTTETYNCGMRIAKYIKEK----NAATTVFMGGCHVTYEYEDALNS-GVVDIVSRNEG 129

Query: 133 YYRLPEL----------------LERARFGKRVVDTDYSVEDKFERLSIVDGGY--NRKR 174
                EL                +   + G  V + D    +  + L I D  +   ++ 
Sbjct: 130 EITTKELCDLYINNIGSLQEIDGISYIKDGVIVSNQDRKFIENLDSLPIPDRSFFDIKEY 189

Query: 175 GVTAFLTIQEGCDKFCTFCVVP-YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVN 233
           G+ A ++   GC   C FC     + G    RS   +++E + LID G   I  +   + 
Sbjct: 190 GIPASISTSRGCPGQCIFCAASGLSGGRYRRRSAESIIEEIKYLIDLGFHHIQFVDDTLT 249

Query: 234 AWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM-SDCLIKAHGDLDVLMPYLH 292
           A        +      +L  +  I+  + + +      D+ +  L++           + 
Sbjct: 250 A--------DLKRLHQVLDMI--IEQELNITFVCESRVDIVTFELLEKLKKAG--CKMIQ 297

Query: 293 LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352
             V++GS  +L  + +  T  +  ++ +    +  +I  +S  I+G P +T    + T++
Sbjct: 298 YGVEAGSQEMLDCLKKNITMEQILRVFEWCNQL--EIQTASCLIIGQPYDTHKTIQDTIN 355

Query: 353 L---VDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
           +   + ++G A+      +P  GT    M    DE
Sbjct: 356 IALKLQELG-ARIVFSISTPYPGT---YMYNHTDE 386


>gi|115374498|ref|ZP_01461779.1| radical SAM domain protein [Stigmatella aurantiaca DW4/3-1]
 gi|310817815|ref|YP_003950173.1| hypothetical protein STAUR_0542 [Stigmatella aurantiaca DW4/3-1]
 gi|115368477|gb|EAU67431.1| radical SAM domain protein [Stigmatella aurantiaca DW4/3-1]
 gi|309390887|gb|ADO68346.1| conserved uncharacterized protein [Stigmatella aurantiaca DW4/3-1]
          Length = 540

 Score = 95.0 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 66/361 (18%), Positives = 118/361 (32%), Gaps = 54/361 (14%)

Query: 41  SLRMEDMFFSQG------------YERVNSMD-DADLIVLNTCHIREKAAEKVYSFLGRI 87
           S  +  +    G            YE+      + D+I L+T                  
Sbjct: 76  SETLCSILDGCGRDYEMFRLEDVWYEKCEPQTTNPDVIALST---------TFICNRKAF 126

Query: 88  RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE----RA 143
                       +  VVV G  +  +   ++R  P ++ +V        P LL+    +A
Sbjct: 127 NAAIEWIRARFPNAKVVVGGQYSNLKYMRLMREFPGIDFIVRGDAEIAFPMLLDALEGKA 186

Query: 144 RFGKR---VVDTDYSVED------KFERLSIVDGGYNRKRGVTAFLTI--QEGCDKFCTF 192
             GK    V+    S E+      +F  +++      R RG    +      GC   C F
Sbjct: 187 DLGKVPNLVIGGPGSGEERQVTLTEFGYINVDQHPSPRFRGHRPIIPYESMRGCPFTCKF 246

Query: 193 CVVPYTRGIEISRSLSQVV-DEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLL 251
           C  P+       +S  ++  D A     NG   I  +                    +L 
Sbjct: 247 CSFPFASPEWRYKSADKICHDWASYAEANGASLIRAMDSTFTVP--------PKRLRELF 298

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
             L  + G+    YT ++  +  D +             L +  +S S+  LK MN++ T
Sbjct: 299 EKLPSL-GIRWEAYTRANVINTPDVVSGLEASH---CTTLSIGFESMSNNSLKYMNKKVT 354

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV--DKIGYAQAFSFKYSP 369
           A + R+  + +     D      FI+G+PGE  +D+  T   +  +   +     F  + 
Sbjct: 355 AEQNRRANELLADSAVDF--RGSFIIGYPGENVEDYEMTQRFLVNEYARHFMLSVFSLTD 412

Query: 370 R 370
            
Sbjct: 413 E 413


>gi|167581190|ref|ZP_02374064.1| radical SAM domain protein [Burkholderia thailandensis TXDOH]
 gi|257138494|ref|ZP_05586756.1| radical SAM domain-containing protein [Burkholderia thailandensis
           E264]
          Length = 473

 Score = 95.0 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 67/360 (18%), Positives = 133/360 (36%), Gaps = 58/360 (16%)

Query: 54  ERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAE 113
           E +    D DL++++T              L +++            +LV + G     +
Sbjct: 61  ETLKIAKDYDLVIIHTSTPSFPTDAMFAEDLKKMK----------PSMLVGMVGAKVAVD 110

Query: 114 GEEILRRSPIVNVVVGPQTYYRLPELLE------------RARFGKRVVDTDYSVEDKFE 161
               L  +  ++ V   +  Y   ++ E            RA+ G    +    + +  +
Sbjct: 111 PHNSLTATQAIDFVCREEFDYTCKDIAEGKPFAEILGMSYRAKDGSIEHNGPRPMIENMD 170

Query: 162 RLSIVDGGYNRKRGV---------TAFLTI--QEGCDKFCTFCVVPYTRGIEISR--SLS 208
            L  V   Y R   +           +++I    GC   CTFC+ P T G    R  S+ 
Sbjct: 171 ELPFVAPVYKRDLKIDNYFIGYLNYPYVSIYTGRGCRSKCTFCLWPQTVGGHRYRVRSVE 230

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK---GLVRLRY 265
            V+ E +            +  N+   +    D +  TF+D    + EI    G + + +
Sbjct: 231 SVLAEVK-----------WIRDNMPEVKEIMFDDD--TFTDFKPRVEEIARGLGKLGVTW 277

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
           + +   ++    +K   +    +  L +  +SG D+IL ++ +       R+  +  + +
Sbjct: 278 SCNAKANVPYSTLKIMKE--NGLRLLLVGYESGDDQILLNIKKGLRTDIARRFNEDCKKL 335

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
              I I   FI+G PGET +  + T++   +I      + + S     PG+ +  Q  EN
Sbjct: 336 --GIKIHGTFILGLPGETKETIKKTIEYAKEI---NPHTIQVSLAAPYPGTRLYNQAIEN 390


>gi|192292434|ref|YP_001993039.1| radical SAM domain protein [Rhodopseudomonas palustris TIE-1]
 gi|192286183|gb|ACF02564.1| Radical SAM domain protein [Rhodopseudomonas palustris TIE-1]
          Length = 633

 Score = 95.0 bits (235), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 87/222 (39%), Gaps = 13/222 (5%)

Query: 174 RGVTAFLTIQEGCDKFCTFCVVPYTRGI-EISRSLSQVVDEARKLI-DNGVCEITLLGQN 231
               A +    GC   CTFC V    G     R++  V+DE + L+ D+G+  I      
Sbjct: 254 DKPFATVLAARGCRARCTFCTVRNFNGFGLRQRTVQDVIDEVKHLVTDHGIRSID----- 308

Query: 232 VNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL 291
                   L       +       ++ GL            + D +++A       +   
Sbjct: 309 --WLDDDLLWDRDRALALFRGLAEQVPGLEWTASNGLIAVAIDDEMMQAMVASG--LRAF 364

Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351
            + V+SG+D +LK++ +  T     +    + +  PD+ +S++FI+GFP ET      + 
Sbjct: 365 KIGVESGNDAMLKTIKKP-TTKPKLRARAGLFAKYPDVFVSTNFIIGFPDETFGQMMDSY 423

Query: 352 DLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV-DENVKAERLL 392
           DL  ++    A  +   P  GT   +  + + D   K ER  
Sbjct: 424 DLAVELASDWASFYICQPLKGTEMFSAFQSLGDARTKEERYD 465


>gi|53720004|ref|YP_108990.1| hypothetical protein BPSL2398 [Burkholderia pseudomallei K96243]
 gi|53725303|ref|YP_102369.1| radical SAM domain-containing protein [Burkholderia mallei ATCC
           23344]
 gi|67641777|ref|ZP_00440544.1| hopanoid biosynthesis associated radical SAM protein HpnJ
           [Burkholderia mallei GB8 horse 4]
 gi|76811229|ref|YP_334243.1| Fe-S oxidoreductase [Burkholderia pseudomallei 1710b]
 gi|167001080|ref|ZP_02266881.1| hopanoid biosynthesis associated radical SAM protein HpnJ
           [Burkholderia mallei PRL-20]
 gi|167816706|ref|ZP_02448386.1| radical SAM domain protein [Burkholderia pseudomallei 91]
 gi|167825111|ref|ZP_02456582.1| radical SAM domain protein [Burkholderia pseudomallei 9]
 gi|167846614|ref|ZP_02472122.1| radical SAM domain protein [Burkholderia pseudomallei B7210]
 gi|167895197|ref|ZP_02482599.1| radical SAM domain protein [Burkholderia pseudomallei 7894]
 gi|254191281|ref|ZP_04897785.1| radical SAM domain protein [Burkholderia pseudomallei Pasteur
           52237]
 gi|262193273|ref|YP_001081291.2| radical SAM domain-containing protein [Burkholderia mallei NCTC
           10247]
 gi|52210418|emb|CAH36400.1| conserved hypothetical protein [Burkholderia pseudomallei K96243]
 gi|52428726|gb|AAU49319.1| radical SAM domain protein [Burkholderia mallei ATCC 23344]
 gi|76580682|gb|ABA50157.1| Fe-S oxidoreductase [Burkholderia pseudomallei 1710b]
 gi|157938953|gb|EDO94623.1| radical SAM domain protein [Burkholderia pseudomallei Pasteur
           52237]
 gi|238522759|gb|EEP86201.1| hopanoid biosynthesis associated radical SAM protein HpnJ
           [Burkholderia mallei GB8 horse 4]
 gi|243063034|gb|EES45220.1| hopanoid biosynthesis associated radical SAM protein HpnJ
           [Burkholderia mallei PRL-20]
 gi|261825981|gb|ABN01602.2| hopanoid biosynthesis associated radical SAM protein HpnJ
           [Burkholderia mallei NCTC 10229]
 gi|261835079|gb|ABO06508.2| hopanoid biosynthesis associated radical SAM protein HpnJ
           [Burkholderia mallei NCTC 10247]
          Length = 473

 Score = 95.0 bits (235), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 67/367 (18%), Positives = 136/367 (37%), Gaps = 61/367 (16%)

Query: 50  SQGYERVNSMDDA---DLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVA 106
           + G    +++  A   DL++++T              L +++            +LV + 
Sbjct: 54  ADGLSVEDTLKIAKDYDLVIIHTSTPSFPTDAMFAEDLKKMK----------PSMLVGMV 103

Query: 107 GCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE------------RARFGKRVVDTDY 154
           G     +    L  +  ++ V   +  Y   ++ E            RA+ G    +   
Sbjct: 104 GAKVAVDPHNSLTATQAIDFVCREEFDYTCKDIAEGKPFAEILGMSYRAKDGSIEHNGPR 163

Query: 155 SVEDKFERLSIVDGGYNRKRGV---------TAFLTI--QEGCDKFCTFCVVPYTRGIEI 203
            + +  + L  V   Y R   +           +++I    GC   CTFC+ P T G   
Sbjct: 164 PMIENMDELPFVAPVYKRDLKIDNYFIGYLNYPYVSIYTGRGCRSKCTFCLWPQTVGGHR 223

Query: 204 SR--SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK--- 258
            R  S+  V+ E +            +  N+   +    D +  TF+D    + EI    
Sbjct: 224 YRVRSVESVLAEVK-----------WIRDNMPEVKEIMFDDD--TFTDFKPRVEEIARGL 270

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           G + + ++ +   ++    +K   +    +  L +  +SG D+IL ++ +       R+ 
Sbjct: 271 GKLGVTWSCNAKANVPYSTLKIMKE--NGLRLLLVGYESGDDQILLNIKKGLRTDIARRF 328

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
            +  + +   I I   FI+G PGET +  + T++   +I      + + S     PG+ +
Sbjct: 329 NEDCKKL--GIKIHGTFILGLPGETKETIKKTIEYAKEI---NPHTIQVSLAAPYPGTRL 383

Query: 379 LEQVDEN 385
             Q  EN
Sbjct: 384 YNQAIEN 390


>gi|295676688|ref|YP_003605212.1| hopanoid biosynthesis associated radical SAM protein HpnJ
           [Burkholderia sp. CCGE1002]
 gi|295436531|gb|ADG15701.1| hopanoid biosynthesis associated radical SAM protein HpnJ
           [Burkholderia sp. CCGE1002]
          Length = 473

 Score = 94.6 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 56/309 (18%), Positives = 108/309 (34%), Gaps = 41/309 (13%)

Query: 95  IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE------------R 142
            K    LL+ + G     +    L  +  ++ V   +  Y   E+ E            R
Sbjct: 92  KKRKPSLLIGMVGAKVAVDPHNSLIATEAIDFVCREEFDYTCKEISEGKPFSQILGLSYR 151

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLT-----------IQEGCDKFCT 191
           A  G    +    + +  + L  V   Y R   +  +                GC   CT
Sbjct: 152 APDGSIEHNEARPILENMDELPFVAPIYKRDLTIKNYFNGYLKHPYVSLYTGRGCRSKCT 211

Query: 192 FCVVPYTRGIEISR--SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK-CTFS 248
           FC+ P T G    R  S+  V++E +            +  N+   +    D +    F 
Sbjct: 212 FCLWPQTVGGHRYRVRSVENVLEEVK-----------WIRDNMPEVKEIMFDDDTFTDFK 260

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
                ++   G + + ++ +   ++    +K   +    +  L +  +SG D+IL ++ +
Sbjct: 261 PRAEEIARGMGKLGVTWSCNAKANVPYSTLKIMKE--NGLRLLLVGYESGDDQILLNVKK 318

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
                  R+     R++   I +   FI+G PGET +  + T++   +I          +
Sbjct: 319 GLRTDIARRFAQDCRTL--GIKVHGTFIIGLPGETQETIQKTIEYAKEINPLTIQVSLAA 376

Query: 369 PRLGTPGSN 377
           P  GT   N
Sbjct: 377 PYPGTRLYN 385


>gi|254173487|ref|ZP_04880159.1| Fe-S oxidoreductase [Thermococcus sp. AM4]
 gi|214032179|gb|EEB73009.1| Fe-S oxidoreductase [Thermococcus sp. AM4]
          Length = 581

 Score = 94.6 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 75/420 (17%), Positives = 142/420 (33%), Gaps = 41/420 (9%)

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           IR+LK ++I  G   +   +    +   +E+     + + VV       L + L   +  
Sbjct: 109 IRDLKATKILGGPAFMGSASMGGVKITSKELQLAESVFDHVVYGDLEAFLFDYLTSPKDA 168

Query: 147 KRVVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDK-----FCTFCVVPYTR 199
                  Y+    +  L   +V    +    V   +  Q GC K      C+FC  P   
Sbjct: 169 DPFRFRTYAELRDYAILGAEVVKQFPDFPDFVIVEVETQRGCPKAMGIGGCSFCTEPVRY 228

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG-----EKCTFSDLLYSL 254
                R +  VV E + L   GV    +  Q+         +G            L   +
Sbjct: 229 RKVEDRPVEDVVAEVKALYGLGVRHFRVGRQSCIFSYMARPNGRVPVPNPEAIERLFAGI 288

Query: 255 SEIKGLVR-LRYTTSHPRDMSDCLIKAHGDLDVLMPYLH------LPVQSGSDRILKSMN 307
             +   V+ L    ++P  +++   ++      L+ Y          ++S   ++ K  N
Sbjct: 289 RSVAPEVKTLHVDNANPAVIANYPEESVRIAKALIKYGTPGNVVAFGLESADPKVAKLNN 348

Query: 308 RRHTAYEYRQIIDRIRSV--------RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
              TA E  + +  +  V         P +    + I G PGET   +  T   + ++  
Sbjct: 349 LNATAEETYEAVKILNEVGARRGYNGMPWLLPGINIIFGLPGETKKSYEITFQFLKRLLD 408

Query: 360 AQAFSFKYSPR-----LGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQII 414
                 + + R      GTP  +M  +V +  K +RL  +Q    + +   +   + +++
Sbjct: 409 DGLMVRRINIRQVVVFPGTPLWHMRSKV-KTEKHKRL--IQHYRHKIRHEIDLPMLKRVV 465

Query: 415 E---VL--IEKHGKEKGKLVGR-SPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
               VL  +     + G   GR       +V   K   +     V I D    ++ G  V
Sbjct: 466 PVGTVLRDVRAEVFDNGLTYGRQIGSYPLIVGIPKEIPLNRFYDVLIVDHGFRSITGVPV 525


>gi|320100440|ref|YP_004176032.1| Radical SAM domain-containing protein [Desulfurococcus mucosus DSM
           2162]
 gi|319752792|gb|ADV64550.1| Radical SAM domain protein [Desulfurococcus mucosus DSM 2162]
          Length = 528

 Score = 94.6 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 51/307 (16%), Positives = 111/307 (36%), Gaps = 32/307 (10%)

Query: 185 GCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL--DG 242
           G    C FC VP   G   SRS+  +V E  +L+++G   I L   +     G+ L  +G
Sbjct: 225 GIPPGCGFCSVPSMFGPARSRSIESIVREVEELVEHGARRIVLSAPDF-LDYGRDLLVEG 283

Query: 243 EKCTFSDLLYSLSEIKGL--------------VRLRYTTSHPRDMSDCLIKAHGDLDVLM 288
                 +   +++ I+GL              V +         +++ + +  G      
Sbjct: 284 VLTHPCEPPANINAIEGLLSGISSLGPVSQGKVVVMIENIKACLVNEDVARVLGRYLRGT 343

Query: 289 PYLHLPVQSGSD-RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDF 347
           P +H+ +++G+D    + + +        + +  ++     +      +   P  +   +
Sbjct: 344 P-IHIGLETGNDVFNERVLGKPVRVRHVLEAVRLLKG--HGLRPYVYLMHSLPLASKTVY 400

Query: 348 RATMDLVDK---IGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVS 404
             T+ +V++   IG  +   +KY+P   T    +  +     K   +  L+  +      
Sbjct: 401 EDTIRVVNELGRIGVEKITLYKYTPLPNTAFEKLPPESKGVEKY--IAELKTAVTRHNTR 458

Query: 405 FNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNI---GDIIKVRITDVKIS 461
                +G  +E  + ++    GKL G       V+           G +  V +T V   
Sbjct: 459 QKMMLLGSTLEAYVVENS---GKLYGYPARHGPVIFLGSAPRKGLNGCLTLVEVTGVGDR 515

Query: 462 TLYGELV 468
            + G ++
Sbjct: 516 YVKGRIL 522


>gi|39936612|ref|NP_948888.1| coenzyme B12-binding elongator protein 3/MiaB/NifB
           [Rhodopseudomonas palustris CGA009]
 gi|39650468|emb|CAE28991.1| Coenzyme B12-binding:Elongator protein 3/MiaB/NifB
           [Rhodopseudomonas palustris CGA009]
          Length = 589

 Score = 94.6 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 53/223 (23%), Positives = 93/223 (41%), Gaps = 15/223 (6%)

Query: 174 RGVTAFLTIQEGCDKFCTFCVVPYTRGI-EISRSLSQVVDEARKLI-DNGVCEITLLGQN 231
               A +    GC   CTFC V    G     R++  V+DE + L+ D+G+  I      
Sbjct: 210 DKPFATVLAARGCRARCTFCTVRNFNGFGLRQRTVQDVIDEVKHLVTDHGIRSI------ 263

Query: 232 VNAWRGKGLDGEKCTFSDLLYSLSE-IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY 290
              W    L  ++     L   L+E + GL            + D +++A       +  
Sbjct: 264 --DWLDDDLLWDRERALALFRGLAEQVPGLEWTASNGLIAVAIDDEVMQAMVASG--LRA 319

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
             + V+SG+D +LK++ +  T  + R   + + +  P + +S++FI+GFP ET      +
Sbjct: 320 FKIGVESGNDAMLKTIKKPTTKPKLRARAE-LFARYPQVFVSTNFIIGFPDETFGQMMDS 378

Query: 351 MDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV-DENVKAERLL 392
            DL  ++    A  +   P  GT   +  + + D   K ER  
Sbjct: 379 YDLAVELASDWASFYICQPLKGTEMFSAFQSLGDARTKEERYD 421


>gi|296163823|ref|ZP_06846506.1| hopanoid biosynthesis associated radical SAM protein HpnJ
           [Burkholderia sp. Ch1-1]
 gi|295885932|gb|EFG65867.1| hopanoid biosynthesis associated radical SAM protein HpnJ
           [Burkholderia sp. Ch1-1]
          Length = 432

 Score = 94.6 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 68/348 (19%), Positives = 128/348 (36%), Gaps = 44/348 (12%)

Query: 50  SQGYERVNSMDDA---DLIVLNTCHIREKAAEKVYSFLGRIRN-----LKNSRIKEGGDL 101
           + G     ++D A   DL+V++T              L + +      +  +++      
Sbjct: 50  ADGLSVDQTLDIAQQYDLVVIHTSTPSFPTDALFAEDLKKRKPSVLIGMVGAKVAVDPHN 109

Query: 102 LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFE 161
            +     +     EE       V    G + + ++  L  RA  G    +    + +  +
Sbjct: 110 SLTATEAIDFVCREEFDFTCQEV---AGGKPFAQIQGLSYRAADGSIEHNEARPILENMD 166

Query: 162 RLSIVDGGYNRKRGV---------TAFLTI--QEGCDKFCTFCVVPYTRG--IEISRSLS 208
            L  V   Y R   +           +++I    GC   CTFC+ P T G     +RS+ 
Sbjct: 167 ELPFVAPVYKRDLKIDNYFIGYLKHPYVSIYTGRGCRSKCTFCLWPQTVGGHRYRTRSVE 226

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK---GLVRLRY 265
            V+ E +            +  N+   R    D +  TF+D    + EI    G + + +
Sbjct: 227 NVLAEVK-----------WIRDNMPEVREIMFDDD--TFTDFKPRVEEIARGLGQLGVTW 273

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
           + +   ++    +K   +    +  L +  +SG D+IL ++ +       R+  D  R +
Sbjct: 274 SCNAKANVPYSTLKIMKE--NGLRLLLVGYESGDDQILLNIKKGLRTDIARRFSDDCRKL 331

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
              I I   FI+G PGET D  + T++   +I          +P  GT
Sbjct: 332 --GIKIHGTFILGLPGETQDTIQKTIEYAKEINPHTIQVSLAAPYPGT 377


>gi|119720134|ref|YP_920629.1| radical SAM domain-containing protein [Thermofilum pendens Hrk 5]
 gi|119525254|gb|ABL78626.1| Radical SAM domain protein [Thermofilum pendens Hrk 5]
          Length = 515

 Score = 94.6 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 53/309 (17%), Positives = 110/309 (35%), Gaps = 18/309 (5%)

Query: 72  IREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPI-VNVVVGP 130
           +             R+      R  +   + ++  G  A     E+       V+ VV  
Sbjct: 113 VITGREPVNRRSFRRLMESPAVRKAKEKGVKIIAGGPAAWQWLWELESWKKWGVDTVVDG 172

Query: 131 QTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190
           +    + +L+E+   G+ + +  Y      +  SI +    R   V   + I  GC + C
Sbjct: 173 EGEGVVVDLVEKVYRGEPLPEYVYV--SPRDAPSIEEIPVIRGASVNGLVEIMRGCPRGC 230

Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK-CTFSD 249
            FC V           + +VV E R  +  G+  + L  ++V  +   G+          
Sbjct: 231 RFCSVTL--RPLRFMPIEKVVAEVRVNVRAGLRNVLLHSEDVLLYGADGVKPRPEPVLKL 288

Query: 250 LLYSLSEIKG---LVRLRYTTSHPRDMSDCL---IKAHGDLDVLMPYLHLPVQSGSDRIL 303
               L E  G         +     + +  L   +         +  + + +++GS R+ 
Sbjct: 289 HAEVLKEAPGSVAWSHASLSAVKYAEDNYRLVSRLMEMLSERQEILGVEVGIETGSARLA 348

Query: 304 KSMN----RRHTAYEYRQIIDRIRSVRPD--IAISSDFIVGFPGETDDDFRATMDLVDKI 357
           + +       + A E+ +++    ++  D  +  ++  I+G PGET DD   T +LVD +
Sbjct: 349 REVMPAKALPYRAEEWVEVVKDAFAIMHDNRVVPAATLILGLPGETPDDVVKTAELVDDL 408

Query: 358 GYAQAFSFK 366
              ++    
Sbjct: 409 KPYRSLIVP 417


>gi|148260830|ref|YP_001234957.1| radical SAM domain-containing protein [Acidiphilium cryptum JF-5]
 gi|146402511|gb|ABQ31038.1| Radical SAM domain protein [Acidiphilium cryptum JF-5]
          Length = 474

 Score = 94.6 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 63/338 (18%), Positives = 121/338 (35%), Gaps = 51/338 (15%)

Query: 62  ADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRS 121
           A+L++++T         KV + +            E   + +   G     +  E L R+
Sbjct: 70  AELVIIHTSTPSFANDVKVAAQIRA----------ENPGVKIGFIGAKVAVQAGESLERA 119

Query: 122 PIVNVVVGPQTYYRLPELLE------------RARFGKRVVDTDYSVEDKFERLSIVDGG 169
             V+ V   +  + + E+ E            R   G+ V + D    +  + L  V   
Sbjct: 120 APVDFVARNEFDFTIKEIAEGKPFAEVEGISWRNEAGEIVHNQDRPTLEDMDSLPFVADV 179

Query: 170 YNRKRGVTAFLT-----------IQEGCDKFCTFCVVPYTRG--IEISRSLSQVVDEARK 216
           Y R   +  +                GC   CTFC+ P T G     +RS+  V+ E ++
Sbjct: 180 YKRDLKIEDYFIGYLMHPYVSLYTGRGCKSRCTFCLWPQTVGGHRYRTRSVEHVIAEVKQ 239

Query: 217 LIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLL-YSLSEIKGLVRLRYTTSHPRDMSD 275
           +             +    R    D +  T +     +++   G + + ++ +   ++  
Sbjct: 240 IQR-----------DFPQMRELFFDDDTFTDNLPRAEAIARELGKLGVTWSCNAKANVPR 288

Query: 276 CLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDF 335
             +K   D    +  L +  +SG+ +IL ++ +       ++       +   I I   F
Sbjct: 289 DTLKVLRD--NGLRLLLVGYESGNQQILHNIKKGMRIEVAKKFTKDCHDL--GIKIHGTF 344

Query: 336 IVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
           I+G PGET D  R T+D   +I          +P  GT
Sbjct: 345 ILGLPGETQDTIRETIDFAKEINPHTIQVSLAAPYPGT 382


>gi|325959709|ref|YP_004291175.1| Radical SAM domain-containing protein [Methanobacterium sp. AL-21]
 gi|325331141|gb|ADZ10203.1| Radical SAM domain protein [Methanobacterium sp. AL-21]
          Length = 476

 Score = 94.6 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 56/280 (20%), Positives = 102/280 (36%), Gaps = 15/280 (5%)

Query: 134 YRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC 193
           YR PE         R +  D        R  +    Y   +  +  +    GC   C +C
Sbjct: 151 YRDPETGSIKTNNPRPLIEDLDSLPFPARHLVSFESYGISKSQSGGMITSRGCVYNCGYC 210

Query: 194 VVPYTRGI-EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLY 252
                 G    SRS   VVDE  +L+ N          N  A+        K   + +  
Sbjct: 211 SSSLIMGKKFRSRSPENVVDEIEELVYN-------YHLNDIAFMDDTFMLNKNRAASIAD 263

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
            + E + L      +S    ++  L+    +    M  ++  V+SGS RIL  M +    
Sbjct: 264 EIKE-RNLDVSFVASSRVDMVNQDLLFKLKNAG--MNTIYYGVESGSQRILNLMKKGINL 320

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
            +    +   ++    + + + +I+G+PGET +D   T+    K+          +P  G
Sbjct: 321 KQAENAVKNAKNA--GLEVLTSYIIGYPGETQNDMNETIKFSIKLEPDYCQYSILTPFPG 378

Query: 373 TPGSNMLEQVD--ENVKAERLLCLQKKLREQQVSFNDACV 410
           TP  + L+  D  +    E+   ++  L  +++  N   +
Sbjct: 379 TPIYHDLKDKDLIKTENWEKYTVMKPILNYEKLGLNKDMI 418


>gi|253699579|ref|YP_003020768.1| radical SAM protein [Geobacter sp. M21]
 gi|251774429|gb|ACT17010.1| Radical SAM domain protein [Geobacter sp. M21]
          Length = 488

 Score = 94.6 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 69/406 (16%), Positives = 127/406 (31%), Gaps = 81/406 (19%)

Query: 35  QMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRI------- 87
            MN+     +       G +   +  +A             + E + + L R+       
Sbjct: 38  PMNLA---YLASTLRQAGLQVAIADYEA----------TPYSEEHLAALLQRLSPALVGF 84

Query: 88  ----------RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLP 137
                       L  +  +  G+ + V+ G  A A  +E L   P  + +V  +    L 
Sbjct: 85  SATTPTIESAAGLARAVKRRRGEAVTVIGGSHASALPKETLEEFPSFDYLVRGEGELTLA 144

Query: 138 ELLERARFG-----------------------KRVVDTDYSVEDKFERLSIVDGGYNRKR 174
           EL  R R G                       + V D D       + L       +  R
Sbjct: 145 ELSLRLRDGGSDQDIRGIAYRYGEGIRVNPPRELVADLDSLPFPARDLLDYSPRAGHSSR 204

Query: 175 GVT-----AFLTIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVCEITLL 228
           G +       L    GC   C+FC +  T G     R    + DE  +++        ++
Sbjct: 205 GFSNALRSGELFTSRGCPVACSFCAIQATFGRSVRFRDPLFIADELDRMVREQKVNHVVI 264

Query: 229 GQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLM 288
             +                + +   LS     +R     +    ++  L++         
Sbjct: 265 ADDTFTL-------NPERAASICEILSRSG--IRSWNCDTRVNTVTPELLRLMRRCG--C 313

Query: 289 PYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA-ISSDFIVGF-PGETDDD 346
             +   V+SGS R+L+ M +  T  +  + +   R     I  +  +FI+G  P ET +D
Sbjct: 314 EKVAFGVESGSPRLLELMGKGITVGQVERAVRWAREA--GIRHVEGNFIIGCDPSETRED 371

Query: 347 FRATMDLVDKIGYAQAFSFKYSPRLGTP------GSNMLEQ-VDEN 385
              T  L+  + ++        P  GTP       + ++E  V   
Sbjct: 372 LEQTRRLIRGLPWSFVSVSVVVPYPGTPLREKMLAAGLIEPGVPWE 417


>gi|270307544|ref|YP_003329602.1| radical SAM/B12 binding domain protein [Dehalococcoides sp. VS]
 gi|270153436|gb|ACZ61274.1| radical SAM/B12 binding domain protein [Dehalococcoides sp. VS]
          Length = 494

 Score = 94.2 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 48/252 (19%), Positives = 91/252 (36%), Gaps = 17/252 (6%)

Query: 129 GPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAF-LTIQEGCD 187
           G   Y  +  L  + + G+  ++         + L                 L    GC 
Sbjct: 135 GDGDYAGILGLAWKDKEGRITINQPRPFIHNLDELPDPAWHLIDVPKYWDITLNTSRGCP 194

Query: 188 KFCTFC-VVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKC 245
             C+FC  +P+ +G     S+ ++V +   L  N  V  I     N            + 
Sbjct: 195 FKCSFCYNIPFHQGHRADLSVERIVSQIEHLQKNYKVKFIRFFEDNFTF--------NRR 246

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
              +   ++  I+  +++++ T    DMS+  +            + + V++GS R+L+ 
Sbjct: 247 RMREFCRTI--IERRIKIKWDTESRADMSEEDVALMAKAG--CTSVGIGVETGSKRMLEY 302

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           +N+     E        R VR  I      ++  P ET  DF+ T D++ K+        
Sbjct: 303 LNKGIDLDEMGHTF--WRFVRHGIMPRLYIMLAVPSETPADFKETQDMLRKMEDPPFMYM 360

Query: 366 KYSPRLGTPGSN 377
           ++ P  GTP   
Sbjct: 361 RFVPYPGTPLYE 372


>gi|270308707|ref|YP_003330765.1| radical SAM/B12 binding domain protein [Dehalococcoides sp. VS]
 gi|270154599|gb|ACZ62437.1| radical SAM/B12 binding domain protein [Dehalococcoides sp. VS]
          Length = 494

 Score = 94.2 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 48/252 (19%), Positives = 91/252 (36%), Gaps = 17/252 (6%)

Query: 129 GPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAF-LTIQEGCD 187
           G   Y  +  L  + + G+  ++         + L                 L    GC 
Sbjct: 135 GDGDYAGILGLAWKDKEGRITINQPRPFIHNLDELPDPAWHLIDVPKYWDITLNTSRGCP 194

Query: 188 KFCTFC-VVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKC 245
             C+FC  +P+ +G     S+ ++V +   L  N  V  I     N            + 
Sbjct: 195 FKCSFCYNIPFHQGHRADLSVERIVSQIEHLQKNYKVKFIRFFEDNFTF--------NRR 246

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
              +   ++  I+  +++++ T    DMS+  +            + + V++GS R+L+ 
Sbjct: 247 RMREFCRTI--IERRIKIKWDTESRADMSEEDVALMAKAG--CTSVGIGVETGSKRMLEY 302

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           +N+     E        R VR  I      ++  P ET  DF+ T D++ K+        
Sbjct: 303 LNKGIDLDEMGHTF--WRFVRHGIMPRLYIMLAVPSETPADFKETQDMLRKMEDPPFMYM 360

Query: 366 KYSPRLGTPGSN 377
           ++ P  GTP   
Sbjct: 361 RFVPYPGTPLYE 372


>gi|20094331|ref|NP_614178.1| Fe-S oxidoreductase [Methanopyrus kandleri AV19]
 gi|19887387|gb|AAM02108.1| Fe-S oxidoreductase [Methanopyrus kandleri AV19]
          Length = 457

 Score = 94.2 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 58/317 (18%), Positives = 110/317 (34%), Gaps = 39/317 (12%)

Query: 90  LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA------ 143
            K +++ +     V + G        E LR SP  +VV+  +      E+LE        
Sbjct: 79  YKVAKLAKDEGAFVFLGGPHPTFMDREALRESP-ADVVIRGEGESTTVEVLEAVDRWEES 137

Query: 144 -----------RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTA------FLTIQEGC 186
                         K V + D    +  + L +           +A       +    GC
Sbjct: 138 DLSNIPGITYREGSKIVRNPDRQEPEDLDSLPLPAYDKVDLDQYSADSVRFVPVITSRGC 197

Query: 187 DKFCTFCVVPYTRG-IEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEK 244
              C FC      G     +S  +VV+E   L++  GV  +  +     A         K
Sbjct: 198 PFRCLFCASSRIFGPKWRGKSPDRVVEEISYLVEELGVERLEFVDDVFTAH--------K 249

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304
               ++   + E +G+       +    ++  L +   +       +++  +S S+  LK
Sbjct: 250 RRVREICEKMRE-EGIDVPWDCGARADTLTPELARTIREHG--CRTVYVGAESASNETLK 306

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
            +N+  T  +   I  R  + R  + I   FI+GFP E  +D   T+    ++       
Sbjct: 307 RINKGITVQDV--IACRKVAKRHGLRILLSFILGFPWEDREDVFRTIKFARRLEPDYVQF 364

Query: 365 FKYSPRLGTPGSNMLEQ 381
              +P  GTP  ++ ++
Sbjct: 365 TVCTPYPGTPLYDLAKE 381


>gi|37520860|ref|NP_924237.1| Mg-protoporphyrin IX monomethyl ester oxidative cyclase
           [Gloeobacter violaceus PCC 7421]
 gi|35211855|dbj|BAC89232.1| glr1291 [Gloeobacter violaceus PCC 7421]
          Length = 457

 Score = 94.2 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 53/289 (18%), Positives = 90/289 (31%), Gaps = 29/289 (10%)

Query: 153 DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVD 212
                D F+         +        +    GC   C +C  P         ++ QV++
Sbjct: 172 PMPARDLFDHERYQAYWRSTFGYTQTPVFTARGCPYGCEYCDQPIFGATYREHTVEQVME 231

Query: 213 EARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV-RLRYTTSHPR 271
           +    +  G   I            +            L    EI     + ++      
Sbjct: 232 DIENALAAGYSHIWFSDDIFMLNWQR-----------ALKICDEIHRRGLKFKWDCLGRV 280

Query: 272 DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAI 331
           D+   +             +   ++SGS R+L+ M +R +  + RQ I    SV   I  
Sbjct: 281 DVQRKVFARMAAAG--CERIFFGIESGSPRVLRQMGKRFSPQDVRQAIQDANSV--GIRA 336

Query: 332 SSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV-------DE 384
           ++ F +G+PGE  +D  AT+  +  +           P  GT    + ++V        E
Sbjct: 337 AAFFQIGYPGERTEDILATLQFIPTLPLDYLSFTITYPLPGT---KLFDRVVSEGRLSPE 393

Query: 385 NV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG 430
                K      L  K    Q+    A        L EKH    GK +G
Sbjct: 394 EQAEWKRAGHNVLTYKADHSQLKLRSAIYAARARFLAEKHLGWLGKTLG 442


>gi|71901263|ref|ZP_00683362.1| Protein of unknown function UPF0004 [Xylella fastidiosa Ann-1]
 gi|71728954|gb|EAO31086.1| Protein of unknown function UPF0004 [Xylella fastidiosa Ann-1]
          Length = 113

 Score = 94.2 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 35/79 (44%), Positives = 52/79 (65%), Gaps = 1/79 (1%)

Query: 11  AHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNT 69
           AH      D+     + F+K++GCQMN YDS +M D+  + +  E  ++ ++AD+I++NT
Sbjct: 34  AHPGDPSHDRPPSRGKLFIKTHGCQMNEYDSAKMADVLTTTEALELTDNPEEADIILINT 93

Query: 70  CHIREKAAEKVYSFLGRIR 88
           C IREKA EKV+S LGR R
Sbjct: 94  CSIREKAQEKVFSQLGRWR 112


>gi|83309217|ref|YP_419481.1| Fe-S oxidoreductase [Magnetospirillum magneticum AMB-1]
 gi|82944058|dbj|BAE48922.1| Fe-S oxidoreductase [Magnetospirillum magneticum AMB-1]
          Length = 486

 Score = 94.2 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 66/349 (18%), Positives = 112/349 (32%), Gaps = 53/349 (15%)

Query: 75  KAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYY 134
            + +     L  IR +K    K    L       +     +E     P V+ +   +   
Sbjct: 87  SSTQSFRQDLEVIRAIKQLNPKVKSVLYGSHPTFMPNFCLKE-----PEVDFIATREAEE 141

Query: 135 RLPELLERARFG---KRVVDTDYSVEDKFERLSIVDGGYNR------------------- 172
            L ELL     G   + +    +   D   ++S      N                    
Sbjct: 142 SLRELLGALLNGDNWEGIAGIGWRDADGKPQMSPTRAFANMNDLPIPDRRLLPAKVDYFN 201

Query: 173 ---KRGVTAFLTIQEGCDKFCTFCVVPYTRG-IEISRSLSQVVDEARKLIDNGVCEITLL 228
              KR     +    GC   C +C  P   G    +RS +++++E R++ D G  EI   
Sbjct: 202 PMVKRVPFTTMITSRGCPARCNYCTAPTFYGNKTRARSTAKIIEELREIRDLGYREIFFR 261

Query: 229 GQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLM 288
            +  +A++G+ +   +   S+ L                     +    +          
Sbjct: 262 DETFSAYKGRNMQVYETMLSENLDF---------TWIANGRVDMIDREQLALMKRAG--C 310

Query: 289 PYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFR 348
             L   V++GS  +L +  +  T  +  +     R V   I   +  I G PGET D  R
Sbjct: 311 HTLKFGVETGSQMMLDTYKKGTTIEQAVEAFRTAREV--GINTHAHIIFGGPGETLDTIR 368

Query: 349 ATMDLVDKIGYAQAFSF-KYSPRLGTPGSNMLEQVDENVKAERLLCLQK 396
            T+D V     A   +F   +P  GT   +M         AER   +  
Sbjct: 369 HTVDFVSNTLKATTATFGILTPYPGTELFDM--------VAERHPEIMD 409


>gi|288941659|ref|YP_003443899.1| radical SAM domain-containing protein [Allochromatium vinosum DSM
           180]
 gi|288897031|gb|ADC62867.1| Radical SAM domain protein [Allochromatium vinosum DSM 180]
          Length = 482

 Score = 94.2 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 52/314 (16%), Positives = 113/314 (35%), Gaps = 49/314 (15%)

Query: 99  GDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL------------------- 139
             + V + GC +   G +IL   P ++ V   ++  ++ EL                   
Sbjct: 100 PTIRVAIGGCHSSLFGSDILYHCPEIDYVGIGESEEQIVELVSTLDKNWNSSDFDIQAFG 159

Query: 140 ---------LERARFGKRVVDTDYSV-------EDKFERLSIVDGGYNRKRGVTAFLTIQ 183
                    L       + +DT Y         E  +   S           V+  +   
Sbjct: 160 WRDTAGNIQLREREIFNKDLDTIYHPSWHSVNFEKYYRDHSQWHNPKQHDIKVSIPIQTS 219

Query: 184 EGCDKFCTFCVVPYTRGI-EISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLD 241
             C   C+FC      G     RS + VVDE +  ++  G      +  N+         
Sbjct: 220 RSCPFSCSFCSSIEVNGRGYRRRSANAVVDEIQLHVEQFGHRYFGFVDDNLTVS------ 273

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
            ++   + +   +     +    ++  H   + + +I A  +   +  Y  +P++ G++R
Sbjct: 274 -KRHILAIMNEIVRRDLDIQFESFSGYHIATLDEEVITALVEAGCI--YTLMPIEHGNER 330

Query: 302 IL-KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
           +  + + ++    +  ++++  R    ++ I + FI+GFP +T D  R T++++ ++   
Sbjct: 331 MRNQIIGKKLPTEKIYEVVENYRKF--EVLIRAVFIMGFPEDTHDTLRDTLEMIQRLQVD 388

Query: 361 QAFSFKYSPRLGTP 374
               F   P  GT 
Sbjct: 389 LVDVFTLIPYPGTK 402


>gi|325958322|ref|YP_004289788.1| Radical SAM domain-containing protein [Methanobacterium sp. AL-21]
 gi|325329754|gb|ADZ08816.1| Radical SAM domain protein [Methanobacterium sp. AL-21]
          Length = 450

 Score = 93.9 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 58/318 (18%), Positives = 118/318 (37%), Gaps = 33/318 (10%)

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135
           A   V   +G          +   + + V+ G        E+L ++  V++VV  +    
Sbjct: 69  AITSVTPTIGSALETAKLSKEVCPNAVTVLGGYHPTFTFPEML-KNDFVDIVVKGEGELT 127

Query: 136 LPELLERARFGK------------------RVVDTDYSVEDKFERLSIVDGGYNRKRGVT 177
           + +L++    G+                  ++++   S+      L  +D        +T
Sbjct: 128 MVDLVDALEKGRDLQEVEGIATRDFVTEPRKIIEDLDSLPFPARHLLPMDEYKILNMKLT 187

Query: 178 AFLTIQ-EGCDKFCTFCVVPYTRG-IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW 235
               I   GC   C+FC      G     RS   VVDE   L++            + A+
Sbjct: 188 TGTIISGRGCPYQCSFCASSAMHGHKLRLRSAKSVVDEMEHLVNEH-------DIEMVAF 240

Query: 236 RGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPV 295
                   K    ++  ++ E +GL      T+    +S+ L+K   D   +   + L V
Sbjct: 241 MDDTFTISKKRVYEICEAIKE-RGLKNYWGCTARVDTISEDLLKTMKDAGCI--TMFLGV 297

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
           +S   ++L  +N++    + ++  +  R    D+   +  ++G PG+T    R T++ V 
Sbjct: 298 ESADQQVLNEVNKKTNIAKIKETFELTRKY--DMRTIASVVLGMPGDTKSSIRNTINFVK 355

Query: 356 KIGYAQAFSFKYSPRLGT 373
           ++  + A     +P  GT
Sbjct: 356 QLEPSYAVFSLATPYPGT 373


>gi|240103390|ref|YP_002959699.1| Radical SAM protein, elongator protein 3/MiaB/NifB related
           [Thermococcus gammatolerans EJ3]
 gi|239910944|gb|ACS33835.1| Radical SAM protein, elongator protein 3/MiaB/NifB related
           [Thermococcus gammatolerans EJ3]
          Length = 581

 Score = 93.9 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 82/455 (18%), Positives = 156/455 (34%), Gaps = 46/455 (10%)

Query: 57  NSMDDADLIV----LNTCHIREKAAEKVYSFLGR-IRNLKNSRIKEGGDLLVVVAGCVAQ 111
             ++ ADL+V    L+T      A       + R +R++K ++I  G   +   +    +
Sbjct: 74  EILEKADLVVYIGGLHTPGKYLSAVPGSVEEVARFLRDVKATKILGGPAFMGSASMGGVK 133

Query: 112 AEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK--RVVDTDYSVEDKFERLSIVDGG 169
               E+     + + VV       L + L   +     R  + +   +       +V   
Sbjct: 134 ITSRELQLAESVFDYVVYGDLEAFLFDYLTSPKDADPFRFRNYNELRDYAIIGAEVVKQF 193

Query: 170 YNRKRGVTAFLTIQEGCDK-----FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCE 224
            +    V   +  Q GC K      C+FC  P        R +  VV E + L D GV  
Sbjct: 194 PDYPDFVIVEIETQRGCPKAMGIGGCSFCTEPVRYKTVEDRPVEDVVAEVKALYDLGVRH 253

Query: 225 ITLLGQNVNAWRGKGLDGE-KCTFSDLLYSL-----SEIKGLVRLRYTTSHPRDMSDCLI 278
             +  Q+         +G       D++  L     S    +  L    ++P  +++   
Sbjct: 254 FRVGRQSCIFSYMARPNGRVPVPNPDVIEKLFAGIRSVAPDVKTLHVDNANPAVIANYPE 313

Query: 279 KAHGDLDVLMPYLH------LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV------- 325
           ++      L+ Y          ++S   ++ K  N   TA E  + +  +  V       
Sbjct: 314 ESVRIAKALIKYGTPGNVVAFGLESADPKVAKLNNLNATAEETYEAVKILNEVGAKRGYN 373

Query: 326 -RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR-----LGTPGSNML 379
             P +    + I G PGET   +  T   + ++        + + R      GTP  +M 
Sbjct: 374 GMPWLLPGINIIFGLPGETKKSYEITFQFLKRLLDDGLMVRRINIRQVVVFPGTPLWHMR 433

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIE---VL--IEKHGKEKGKLVGR-SP 433
            +V +  K +RL  +Q    + +   +   + +++    VL  +     + G   GR   
Sbjct: 434 SKV-KTEKHKRL--IQHYRHKIRHEIDLPMLKRVVPVGTVLRDVRAEVFDNGLTYGRQIG 490

Query: 434 WLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
               +V   K   +     V I D    ++ G  V
Sbjct: 491 SYPLIVGIPKEVPLNRFYDVLIVDHGFRSITGIPV 525


>gi|148270321|ref|YP_001244781.1| radical SAM domain-containing protein [Thermotoga petrophila RKU-1]
 gi|147735865|gb|ABQ47205.1| Radical SAM domain protein [Thermotoga petrophila RKU-1]
          Length = 551

 Score = 93.9 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 52/300 (17%), Positives = 100/300 (33%), Gaps = 40/300 (13%)

Query: 165 IVDGGYNRKRGVTAFLTIQEGCDKF--CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGV 222
           +V   +     V   + +  GC++   C+FC  P   G   SR +  ++ E   L   G 
Sbjct: 163 VVLEKHPNFPHVICEIEVSRGCERRTFCSFCTEPLLHGRLKSRDVQAILKEIESLYRAGC 222

Query: 223 CEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSD----CLI 278
                         G   +G K +       L E+    R            +     L+
Sbjct: 223 RAFRFGRAANILAFGSDRNGGKPS----PEILEELYSGTREVAPHLEVLHTDNANPSYLV 278

Query: 279 KAHGDLDVLMPY----------LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV--- 325
               +   ++                V+S  + +LK  N + +  E+ + I  +  +   
Sbjct: 279 TYEKECRKIVETIVRYNTPGDVFSFGVESFDENVLKKNNVQGSPEEFLKAIAVVNEIGGV 338

Query: 326 ----RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA------QAFSFKYSPRLGTPG 375
                P +    + I G PGET++  +     + +I         +    K     GTP 
Sbjct: 339 RVDGIPKLLPGVNLIFGLPGETEETLKKNYSYLKRI-LDEGYLLRRINIRKLLAYPGTPV 397

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACV---GQII-EVLIEKHGKEKGKLVGR 431
              L+     +K+      ++K+RE+        V   G ++ +V++E   +E     GR
Sbjct: 398 YEYLKNKKHRIKSHLHEQWKRKIREEIDREMLKRVFPAGTVLKKVIVE--YREGKTSFGR 455


>gi|197118085|ref|YP_002138512.1| cobalamin-binding radical SAM domain-containing iron-sulfur
           cluster-binding oxidoreductase [Geobacter bemidjiensis
           Bem]
 gi|197087445|gb|ACH38716.1| cobalamin-binding radical SAM domain iron-sulfur cluster-binding
           oxidoreductase [Geobacter bemidjiensis Bem]
          Length = 424

 Score = 93.9 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 71/224 (31%), Gaps = 21/224 (9%)

Query: 159 KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG-IEISRSLSQVVDEARKL 217
            F   S+      R   +   L  + GC   C++C  P   G       +  V++   + 
Sbjct: 172 PFPDPSLWSVPAGRADELWIPLQTRRGCPMRCSYCSTPALEGTAIRMHPVETVLEALSRH 231

Query: 218 IDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCL 277
           +  G      +    N                    +S   G+           D  + +
Sbjct: 232 VAAGFNNFYFVDNTFNFP-------PDYAKRLCDAIVSAQLGIRWRCILYPGFVD--EEM 282

Query: 278 IKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIV 337
           +            + L  +SGS  ILK++N+++     R   + +R  R  IA     + 
Sbjct: 283 VSKMARAG--CVEVSLGFESGSSLILKNLNKKYDLDRVRDASELLR--RHGIARMGFLMF 338

Query: 338 GFPGETDDDFRATMDLVDKIGYA----QAFSFKYSPRLGTPGSN 377
           G PGET +  + ++D  D +             Y     TP + 
Sbjct: 339 GAPGETRETVQESLDFADSLQLDMLKLSTGIRIY---PDTPLAE 379


>gi|91779703|ref|YP_554911.1| hypothetical protein Bxe_B0385 [Burkholderia xenovorans LB400]
 gi|91692363|gb|ABE35561.1| conserved hypothetical protein [Burkholderia xenovorans LB400]
          Length = 473

 Score = 93.9 bits (232), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 67/345 (19%), Positives = 124/345 (35%), Gaps = 55/345 (15%)

Query: 57  NSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEE 116
           +  +  DL+V++T              L           K    +L+ + G     +   
Sbjct: 64  DIAEQYDLVVIHTSTPSFPTDALFAEDL----------KKRKPSVLIGMVGAKVAVDPHN 113

Query: 117 ILRRSPIVNVVVGPQTYYRLPELLE------------RARFGKRVVDTDYSVEDKFERLS 164
            L  +  ++ V   +  +   E+ E            RA  G    +    + +  + L 
Sbjct: 114 SLTATEAIDFVCREEFDFTCQEVAEGKPFAQIKGLSYRAADGSIEHNEARPILENMDELP 173

Query: 165 IVDGGYNRKRGV---------TAFLTI--QEGCDKFCTFCVVPYTRG--IEISRSLSQVV 211
            V   Y R   +           +++I    GC   CTFC+ P T G     +RS+  V+
Sbjct: 174 FVAPVYKRDLKIDNYFIGYLKHPYVSIYTGRGCRSKCTFCLWPQTVGGHRYRTRSVENVL 233

Query: 212 DEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK---GLVRLRYTTS 268
            E +            +  N+   R    D +  TF+D    + EI    G + + ++ +
Sbjct: 234 AEVK-----------WIRDNMPEVREIMFDDD--TFTDFKPRVEEIARGLGQLGVTWSCN 280

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
              ++    +K   +    +  L +  +SG D+IL ++ +       R+  D  R +   
Sbjct: 281 AKANVPYPTLKIMKE--NGLRLLLVGYESGDDQILLNIKKGLRTDIARRFSDDCRKL--G 336

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
           I I   FI+G PGET D  + T++   +I          +P  GT
Sbjct: 337 IKIHGTFILGLPGETQDTIQKTIEYAKEINPHTIQVSLAAPYPGT 381


>gi|297570351|ref|YP_003691695.1| Radical SAM domain protein [Desulfurivibrio alkaliphilus AHT2]
 gi|296926266|gb|ADH87076.1| Radical SAM domain protein [Desulfurivibrio alkaliphilus AHT2]
          Length = 492

 Score = 93.9 bits (232), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 59/338 (17%), Positives = 120/338 (35%), Gaps = 55/338 (16%)

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE---- 141
           + + +  +  + G +  + V G    A  E+ L   P ++VVV  +    + ELLE    
Sbjct: 83  KAKKMATALRQAGFNGALAVGGPFPIALPEKCLTECPELDVVVTGEGEETVVELLEMLAG 142

Query: 142 -----------------------RARFGKRVV-DTDYSVEDKFERLSI------------ 165
                                    R G+ +V +    +    + L              
Sbjct: 143 SPVTTDGGNGDRPWPDLGDIKGLAWRRGQEIVLNPPRPLITDLDALPFPARELLGEIDDY 202

Query: 166 VDGGYNRKRGVTAFLTIQEGCDKFCTFC--VVPYTRGIEISRSLSQVVDEARKLIDNGVC 223
           V      KR   A +    GC++ C +C  +    +     RS+  V+ E R  +  G  
Sbjct: 203 VPPPATYKRRPVAVIITSRGCNRHCLYCFQIDKSRKSGIRYRSVDNVMAEIRHCLAQGYR 262

Query: 224 EITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGD 283
           EI  +   + A   +          +L   + E + L    + ++    +   L+KA  +
Sbjct: 263 EIKFIDDTLAADYQRA--------MELARRIKE-EQLDFTWFASACVNQVDLPLLKAFKE 313

Query: 284 LDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGET 343
                  +    +SG  + L ++ +  T  + ++ +    +    I + + FI G PG+T
Sbjct: 314 AG--CWAILFGAESGVQKDLNTIRKGITPGQIKKAVAA--AKEAGITVYTPFIFGIPGQT 369

Query: 344 DDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
            +D   +++   ++    A     +P  GT   + L+Q
Sbjct: 370 FEDGLKSIEFALELDPDIANFHALTPFPGTELWDNLDQ 407


>gi|58039084|ref|YP_191048.1| putative methyltransferase [Gluconobacter oxydans 621H]
 gi|58001498|gb|AAW60392.1| Putative methyltransferase [Gluconobacter oxydans 621H]
          Length = 474

 Score = 93.5 bits (231), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 59/345 (17%), Positives = 121/345 (35%), Gaps = 51/345 (14%)

Query: 55  RVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG 114
            +  + + DL+V++T      +  +V   L                L++ + G     + 
Sbjct: 63  ILEDVKNRDLVVMHTSTPSFASDVRVAQMLKDA----------NPKLMIGMVGAKVAVQP 112

Query: 115 EEILRRSPIVNVVVGPQTYYRLPELLE------------RARFGKRVVDTDYSVEDKFER 162
            E + +   ++ V   +  + + E+ E            R   G+ + + D ++ +  + 
Sbjct: 113 MESMEKGGPIDFVARNEFDFTIKEIAEGKPLAEVDGITWRNEKGEIIANKDRAMIEDMDS 172

Query: 163 LSIVDGGYNRKRGVTAFLT-----------IQEGCDKFCTFCVVPYTRG--IEISRSLSQ 209
           L  V   Y R   +  +                GC   CTFC+ P T G     +RS   
Sbjct: 173 LPFVTEVYKRDLNINDYFIGYLKHPYISIYTGRGCKSRCTFCLWPQTVGGHRYRTRSPEH 232

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLL-YSLSEIKGLVRLRYTTS 268
           V  E R           L  Q     +    D +  T       +++   G + + ++ +
Sbjct: 233 VAAEVR-----------LAKQYFPEVQEFMFDDDTFTDDLPRAEAIAREMGKLGVTWSCN 281

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
              ++    +K   +    +  L +  +SG+ +IL ++ +       ++       +   
Sbjct: 282 AKANVPYETLKVLKE--NGLRLLLVGYESGNQQILHNIKKGMRVETAKEFTRNCHKL--G 337

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
           I I   FIVG PGET +  + T++   +I          +P  GT
Sbjct: 338 IKIHGTFIVGLPGETKETIQETIEFAKEINPHTLQVSLAAPYPGT 382


>gi|78186802|ref|YP_374845.1| Elongator protein 3/MiaB/NifB [Chlorobium luteolum DSM 273]
 gi|78166704|gb|ABB23802.1| Elongator protein 3/MiaB/NifB [Chlorobium luteolum DSM 273]
          Length = 461

 Score = 93.5 bits (231), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 46/257 (17%), Positives = 86/257 (33%), Gaps = 21/257 (8%)

Query: 127 VVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGY------NRKRGVTAFL 180
           V+  +     PEL      G+               ++  D  Y      +R+      +
Sbjct: 134 VIYGEIESVWPELCRDIMAGRMQPVYRAEALRPMNAMARPDFSYALQSRNSRRYSNRIPV 193

Query: 181 TIQEGCDKFCTFCVVPYTRGI-EISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGK 238
              +GC   C+FC  P   G     R +  V+DE R   D  G   +        ++   
Sbjct: 194 LATKGCPVGCSFCTTPTIYGKNYRYRDIELVLDEMRYHQDRLGRESVHF------SFMDD 247

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
            +      F +LL  +  +     +R+  +   +       A          + +  +S 
Sbjct: 248 NISFRPAYFKELLSHMGRLG----IRWNANISMNFLHDPEIAELAAWSGCDLMSIGFESL 303

Query: 299 SDRILKSMNRRHTA-YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
           +   LKS+++       Y  ++D +      IAI   F+ GF  ++ + F+ T D +   
Sbjct: 304 NPETLKSVHKGSNRLENYSCVVDNLH--MHGIAIQGYFMFGFDNDSAESFQLTYDFIMDN 361

Query: 358 GYAQAFSFKYSPRLGTP 374
                     +P  GTP
Sbjct: 362 RIDFPVFSLVTPFPGTP 378


>gi|91783752|ref|YP_558958.1| putative methyltransferase, or Fe-S oxidoreductase [Burkholderia
           xenovorans LB400]
 gi|91687706|gb|ABE30906.1| Putative methyltransferase, or Fe-S oxidoreductase [Burkholderia
           xenovorans LB400]
          Length = 473

 Score = 93.5 bits (231), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 67/345 (19%), Positives = 124/345 (35%), Gaps = 55/345 (15%)

Query: 57  NSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEE 116
           +  +  DL+V++T              L           K    +L+ + G     +   
Sbjct: 64  DIAEQYDLVVIHTSTPSFPTDALFAEDL----------KKRKPSVLIGMVGAKVAVDPHN 113

Query: 117 ILRRSPIVNVVVGPQTYYRLPELLE------------RARFGKRVVDTDYSVEDKFERLS 164
            L  +  ++ V   +  +   E+ E            RA  G    +    + +  + L 
Sbjct: 114 SLTATEAIDFVCREEFDFTCQEVAEGKPFAQIKGLSYRAADGSIEHNEARPILENMDELP 173

Query: 165 IVDGGYNRKRGV---------TAFLTI--QEGCDKFCTFCVVPYTRG--IEISRSLSQVV 211
            V   Y R   +           +++I    GC   CTFC+ P T G     +RS+  V+
Sbjct: 174 FVAPVYKRDLKIDNYFIGYLKHPYVSIYTGRGCRSKCTFCLWPQTVGGHRYRTRSVENVL 233

Query: 212 DEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK---GLVRLRYTTS 268
            E +            +  N+   R    D +  TF+D    + EI    G + + ++ +
Sbjct: 234 AEVK-----------WIRDNMPEVREIMFDDD--TFTDFKPRVEEIARGLGQLGVTWSCN 280

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
              ++    +K   +    +  L +  +SG D+IL ++ +       R+  D  R +   
Sbjct: 281 AKANVPYPTLKIMKE--NGLRLLLVGYESGDDQILLNIKKGLRTDIARRFSDDCRKL--G 336

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
           I I   FI+G PGET D  + T++   +I          +P  GT
Sbjct: 337 IKIHGTFILGLPGETQDTIQKTIEYAKEINPHTIQVSLAAPYPGT 381


>gi|170694241|ref|ZP_02885396.1| hopanoid biosynthesis associated radical SAM protein HpnJ
           [Burkholderia graminis C4D1M]
 gi|170140981|gb|EDT09154.1| hopanoid biosynthesis associated radical SAM protein HpnJ
           [Burkholderia graminis C4D1M]
          Length = 473

 Score = 93.5 bits (231), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 69/351 (19%), Positives = 125/351 (35%), Gaps = 58/351 (16%)

Query: 63  DLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSP 122
           DL+V++T              L           K    L++ + G     +    L  S 
Sbjct: 70  DLVVIHTSTPSFPTDALFAEDL----------KKRKPSLVIGMVGAKVAVDPHNSLTASE 119

Query: 123 IVNVVVGPQTYYRLPELLE------------RARFGKRVVDTDYSVEDKFERLSIVDGGY 170
            ++ V   +  +   E+              RA  G    +    + +  + L  V   Y
Sbjct: 120 AIDFVCREEFDFTCQEVAAGKPFAQILGLSYRAADGSIEHNAARPILENMDELPFVAPVY 179

Query: 171 NRKRGV---------TAFLTI--QEGCDKFCTFCVVPYTRG--IEISRSLSQVVDEARKL 217
            R   +           +++I    GC   CTFC+ P T G     +RS+  V+ E +  
Sbjct: 180 KRDLKIDNYFIGYLKHPYVSIYTGRGCRSKCTFCLWPQTVGGHRYRTRSVENVLAEVK-- 237

Query: 218 IDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK---GLVRLRYTTSHPRDMS 274
                     +  N+   +    D +  TF+D    + EI    G + + ++ +   ++ 
Sbjct: 238 ---------WIRDNMPEVKEIMFDDD--TFTDFKPRVEEIARGLGKLGVTWSCNAKANVP 286

Query: 275 DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSD 334
              +K   +    +  L +  +SG D+IL ++ +       R+  D  R +   I I   
Sbjct: 287 YSTLKIMKE--NGLRLLLVGYESGDDQILLNIRKGLRTDIARRFSDDCRKL--GIKIHGT 342

Query: 335 FIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
           FI+G PGET    + T+D   +I          +P  GT    + +Q  EN
Sbjct: 343 FILGLPGETQQTIQKTIDYAKEINPHTIQVSLAAPYPGT---RLYDQAVEN 390


>gi|119357445|ref|YP_912089.1| radical SAM domain-containing protein [Chlorobium phaeobacteroides
           DSM 266]
 gi|119354794|gb|ABL65665.1| Radical SAM domain protein [Chlorobium phaeobacteroides DSM 266]
          Length = 468

 Score = 93.5 bits (231), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 64/335 (19%), Positives = 114/335 (34%), Gaps = 36/335 (10%)

Query: 49  FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGC 108
              G      +   D+I      I  +      ++L   + LK          +V++ G 
Sbjct: 78  ERLGQTIPEDLSGYDVI-----AITSRTLNATKAYLIGDKALKQG-------KIVILGGV 125

Query: 109 VAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDG 168
                 EE       V  V G +      EL      GK  +           R++  D 
Sbjct: 126 HPTMLHEEASMHCTSV--VYG-EIESVWTELATDVLKGKMQLVYRAKELKPMSRMTRPDF 182

Query: 169 GY----NRKRGVTAFLTI--QEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDN- 220
            Y       +  ++ + I   +GC   C FC  P   G     R L  V++E R   +  
Sbjct: 183 SYALDSKNSKKYSSLIPILATKGCPVGCNFCTTPTIYGKSFRYRELEFVLEEMRYHQERL 242

Query: 221 GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKA 280
           G  +I        ++    +      F+ LL  ++++ G+      + +  D  +    A
Sbjct: 243 GKKKINF------SFMDDNISFRPKYFTTLLEEMAKL-GVHWNANISMNFLDKPEI---A 292

Query: 281 HGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA-YEYRQIIDRIRSVRPDIAISSDFIVGF 339
                     L +  +S +   LKS+ +       Y  ++D +     +IAI   F+ GF
Sbjct: 293 ELAGRSGCDLLSIGFESLNPETLKSVQKGSNRLGNYETVVDNLHKN--NIAIQGYFMFGF 350

Query: 340 PGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
             +T++ F+ T D + K           +P  GTP
Sbjct: 351 DNDTEESFQLTYDFIMKNRIEFPVFSLVTPFPGTP 385


>gi|209520013|ref|ZP_03268791.1| hopanoid biosynthesis associated radical SAM protein HpnJ
           [Burkholderia sp. H160]
 gi|209499552|gb|EDZ99629.1| hopanoid biosynthesis associated radical SAM protein HpnJ
           [Burkholderia sp. H160]
          Length = 473

 Score = 93.5 bits (231), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 54/305 (17%), Positives = 107/305 (35%), Gaps = 41/305 (13%)

Query: 95  IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE------------R 142
            +    LL+ + G     +    L  +  ++ V   +  Y   E+ E            R
Sbjct: 92  KEHKPSLLIGMVGAKVAVDPHNSLIATEAIDFVCREEFDYTCKEIAEGKPFAQILGLSYR 151

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLT-----------IQEGCDKFCT 191
           A  G    +    + +  + L  V   Y R   +  +                GC   CT
Sbjct: 152 APDGSIEHNDARPILENMDELPFVAPIYKRDLTIKNYFNGYLKHPYVSLYTGRGCRSKCT 211

Query: 192 FCVVPYTRGIEISR--SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK-CTFS 248
           FC+ P T G    R  S+  V++E +            +  N+   +    D +    F 
Sbjct: 212 FCLWPQTVGGHRYRVRSVENVLEEVK-----------WIRDNMPEVKEIMFDDDTFTDFK 260

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
                ++   G + + ++ +   ++    +K   +    +  L +  +SG D+IL ++ +
Sbjct: 261 PRAEEIARGMGKLGVTWSCNAKANVPYSTLKIMKE--NGLRLLLVGYESGDDQILVNVKK 318

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
                  R+     R++   I +   FI+G PGET +  + T++   +I          +
Sbjct: 319 GLRTDIARRFAQDCRTL--GIKVHGTFILGLPGETPETIQKTIEYAKEINPLTIQVSLAA 376

Query: 369 PRLGT 373
           P  GT
Sbjct: 377 PYPGT 381


>gi|94312339|ref|YP_585549.1| radical SAM family protein [Cupriavidus metallidurans CH34]
 gi|93356191|gb|ABF10280.1| Radical SAM [Cupriavidus metallidurans CH34]
          Length = 473

 Score = 93.5 bits (231), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 71/363 (19%), Positives = 133/363 (36%), Gaps = 56/363 (15%)

Query: 40  DSLRMEDMFFSQGYERVNSMD-DADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEG 98
           DS  ++      G E+  ++  D DL++++T         +    L   R          
Sbjct: 46  DSRVLDAPADGLGVEQTLNIAVDYDLVIIHTSTPSFPTDARFAEQLKERR---------- 95

Query: 99  GDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE------------RARFG 146
            D+++ + G  A  +    L  +  ++ V   +  Y   ++              R   G
Sbjct: 96  PDIMIGMVGAKAAVDPGGTLSATEAIDFVCREEFDYTCQDVAAGKPLAGIAGLSYRLPDG 155

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGV---------TAFLTI--QEGCDKFCTFCVV 195
               +    + +  + L  V   Y R   +           +++I    GC   CTFC+ 
Sbjct: 156 TIEHNPARPMIENMDELPFVAPVYKRDLKIQNYFIGYLMHPYVSIYTGRGCRSRCTFCLW 215

Query: 196 PYTRG--IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS 253
           P T G     +RS   V+DE +            + +N+   R    D +  TF+D    
Sbjct: 216 PQTVGGHRYRTRSAQSVIDEVK-----------WIKENMPEVREIMFDDD--TFTDFKPR 262

Query: 254 LSEIK---GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
           + EI    G + L ++ +   ++    +K   +    +  L +  +SG D+IL ++ +  
Sbjct: 263 VEEIARGLGEIGLPWSCNAKANVPYNTLKIMKE--NGLRLLLVGYESGDDQILLNIKKGL 320

Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370
                R+  +  R +   I I   FI+G PGET D    T++   +I          +P 
Sbjct: 321 RTDIARRFTEDCRKL--GIQIHGTFILGLPGETRDTIEKTIEYAKEINPHTIQVSLAAPY 378

Query: 371 LGT 373
            GT
Sbjct: 379 PGT 381


>gi|300022013|ref|YP_003754624.1| hopanoid biosynthesis associated radical SAM protein HpnJ
           [Hyphomicrobium denitrificans ATCC 51888]
 gi|299523834|gb|ADJ22303.1| hopanoid biosynthesis associated radical SAM protein HpnJ
           [Hyphomicrobium denitrificans ATCC 51888]
          Length = 472

 Score = 93.5 bits (231), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 59/343 (17%), Positives = 118/343 (34%), Gaps = 53/343 (15%)

Query: 58  SMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEI 117
            +   DLI+L+T              +     +K+          V   G     E E+ 
Sbjct: 65  DIRSKDLIILHTST------PSFRQDVKTAEMIKD----VNPTAKVGFIGAKVAVEPEKA 114

Query: 118 LRRSPIVNVVVGPQTYYRLPELLE------------RARFGKRVVDTDYSVEDKFERLSI 165
              +  ++ V   +  + + E+ +            R + G  V + D  V    + L  
Sbjct: 115 FSETSAIDFVARNEFDFTIKEIADGRDWANVKGITYRNKEGVVVRNDDREVLHNMDLLPF 174

Query: 166 VDGGYNRKRGVTAFLT-----------IQEGCDKFCTFCVVPYTRG--IEISRSLSQVVD 212
           V   Y R   +  +                GC   CTFC+ P T G      RS+  V++
Sbjct: 175 VTPVYKRDLDINKYFGGYLKHPYISFYTGRGCKSRCTFCLWPQTVGGHNYRVRSIEHVIE 234

Query: 213 EARKLIDN--GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270
           E + +      V EI      +     +            + +L++  G + + ++ +  
Sbjct: 235 EVKYVQREFPQVKEIFFDDDTLTDNLPR------------VEALAKELGKLGVVWSCNAK 282

Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330
            ++    ++   D    +  L +  +SG+ +IL ++ +       ++     R +   I 
Sbjct: 283 ANVPRATLEVLKD--NGLRLLLVGYESGNQQILHNIKKGLRVDVAKRFSKDCREL--GIV 338

Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
           I   FI+G PGET +  + T+    ++          +P  GT
Sbjct: 339 IHGTFILGLPGETRETIQETLAFAKEVNPHTIQVSLAAPYPGT 381


>gi|86150465|ref|ZP_01068690.1| MiaB-like tRNA modifying enzyme [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|85839060|gb|EAQ56324.1| MiaB-like tRNA modifying enzyme [Campylobacter jejuni subsp. jejuni
           CF93-6]
          Length = 159

 Score = 93.5 bits (231), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 32/141 (22%), Positives = 62/141 (43%), Gaps = 7/141 (4%)

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           M RR       ++ + I S     A+ +DFIV  PGE+++ ++  +    +       +F
Sbjct: 1   MRRRSHTDNDLKLFNTIASK--GYALGTDFIVAHPGESEELWQEALRNFKEFPLTHIHAF 58

Query: 366 KYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQI-IEVLIEKHGKE 424
            +SPR  T  + M + ++  +  ERL  L+  + +    F      Q+ +EVL+E   ++
Sbjct: 59  IFSPRNNTHSATMKDVINGTLAKERLNTLKSIVEKNNYEFRKK--NQVSLEVLVE--NQK 114

Query: 425 KGKLVGRSPWLQSVVLNSKNH 445
            G   G   +   + + S   
Sbjct: 115 DGFFEGYDQFFNKIKIKSDKD 135


>gi|126465569|ref|YP_001040678.1| radical SAM domain-containing protein [Staphylothermus marinus F1]
 gi|126014392|gb|ABN69770.1| Radical SAM domain protein [Staphylothermus marinus F1]
          Length = 474

 Score = 93.5 bits (231), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 66/323 (20%), Positives = 110/323 (34%), Gaps = 49/323 (15%)

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF----- 145
           K  + + G D++V+  G       EE L     +++VV  +  Y   EL+          
Sbjct: 87  KLVKEELGNDVIVIAGGPHPTYMYEEALSN--NIDIVVRGEGEYTTLELVNAIEKHGLNK 144

Query: 146 ---------------GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT--------AFLTI 182
                          GK VV          + L             T        A +  
Sbjct: 145 NVLKNIKGIAFRDYSGKVVVTPPRPFIQNLDELPWPARHLLPMDKYTLFSKPIRIAHVMA 204

Query: 183 QEGCDKFCTFCVVPYTRGI-EISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGL 240
             GC   C +C+  Y  G     RS   V DE   L++      I     ++   +    
Sbjct: 205 SRGCPYGCIYCITSYFWGRRIRFRSAKNVADEVEFLVNKYKANHIAFSDDDLVINKRF-- 262

Query: 241 DGEKCTFSDLLYSLSEIK--GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
                    +   + EIK  GL       S    ++  ++K     D     L+  V+S 
Sbjct: 263 ---------VREFIDEIKKRGLDITFSCGSRVNHINKEILKTL--YDNGCTALYFGVESA 311

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           S   L  + +R T  +  ++   ++ ++   A+ S FI+GFP ET DD + T+D   K+ 
Sbjct: 312 SQETLDRIGKRITLEQAERVFKWVKELK-GFALGS-FILGFPWETIDDMKKTVDFAIKLD 369

Query: 359 YAQAFSFKYSPRLGTPGSNMLEQ 381
                    +P  GTP     ++
Sbjct: 370 PDYVQFTALTPYPGTPLFEYAKK 392


>gi|326404224|ref|YP_004284306.1| hypothetical protein ACMV_20770 [Acidiphilium multivorum AIU301]
 gi|325051086|dbj|BAJ81424.1| hypothetical protein ACMV_20770 [Acidiphilium multivorum AIU301]
          Length = 474

 Score = 93.5 bits (231), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 63/338 (18%), Positives = 121/338 (35%), Gaps = 51/338 (15%)

Query: 62  ADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRS 121
           A+L++++T         KV + +            E   + +   G     +  E L R+
Sbjct: 70  AELVIIHTSTPSFANDVKVAAQIRA----------ENPGVKIGFIGAKVAVQAGESLERA 119

Query: 122 PIVNVVVGPQTYYRLPELLE------------RARFGKRVVDTDYSVEDKFERLSIVDGG 169
             V+ V   +  + + E+ E            R   G+ V + D    +  + L  V   
Sbjct: 120 APVDFVARNEFDFTIKEIAEGKPFAEVDGISWRNGAGEIVHNQDRPTLEDMDSLPFVADV 179

Query: 170 YNRKRGVTAFLT-----------IQEGCDKFCTFCVVPYTRG--IEISRSLSQVVDEARK 216
           Y R   +  +                GC   CTFC+ P T G     +RS+  V+ E ++
Sbjct: 180 YKRDLKIEDYFIGYLMHPYVSLYTGRGCKSRCTFCLWPQTVGGHRYRTRSVEHVIAEVKQ 239

Query: 217 LIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLL-YSLSEIKGLVRLRYTTSHPRDMSD 275
           +             +    R    D +  T +     +++   G + + ++ +   ++  
Sbjct: 240 IQR-----------DFPQMRELFFDDDTFTDNLPRAEAIARELGKLGVTWSCNAKANVPR 288

Query: 276 CLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDF 335
             +K   D    +  L +  +SG+ +IL ++ +       ++       +   I I   F
Sbjct: 289 DTLKVLRD--NGLRLLLVGYESGNQQILHNIKKGMRIEVAKKFTKDCHDL--GIKIHGTF 344

Query: 336 IVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
           I+G PGET D  R T+D   +I          +P  GT
Sbjct: 345 ILGLPGETQDTIRETIDFAKEINPHTIQVSLAAPYPGT 382


>gi|326204756|ref|ZP_08194611.1| Radical SAM domain protein [Clostridium papyrosolvens DSM 2782]
 gi|325985127|gb|EGD45968.1| Radical SAM domain protein [Clostridium papyrosolvens DSM 2782]
          Length = 434

 Score = 93.5 bits (231), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 55/366 (15%), Positives = 119/366 (32%), Gaps = 41/366 (11%)

Query: 49  FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGC 108
             +  E +N  +  DL+ +    +    A++ +           + +     + V + G 
Sbjct: 42  EDENVEDINFEESVDLVGI---TVIMHNAQRAFDI---------ADVYRKKGVKVFMGGI 89

Query: 109 VAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDG 168
            A++  ++ L      + V+  +      ++L   + G  +         +     I   
Sbjct: 90  FAESNPDDCLM---HADSVIVSEVEDMWEDILNDFKTGNYLPKYQAVKRPEISDRPIPRH 146

Query: 169 GYNRKRG---VTAFLTIQEGCDKFCTFCVVP-YTRGIEISRSLSQVVDEARKLIDNGVCE 224
              + +        + I  GC   C +C    + +G   +R+L +++ E   L  +    
Sbjct: 147 DLIKDKPGYFSKNLIMISRGCPNRCEYCSSGLHWKGQIKTRNLDEIIREIELLDPS--KP 204

Query: 225 ITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL 284
           I  +  N+   +    D  K  F  L+        L R   +     D  +     +   
Sbjct: 205 IMFIDDNLIWSK----DYAKELFRALI-------PLKRKWISCGSCIDSVEDSELVYLAK 253

Query: 285 DVLMPYLHLPVQSGSDRILKSMNRRHT-AYEYRQIIDRIRSVRPDIAISSDFIVGFPGET 343
           +     +    ++ +   LK+  +      +Y   I+    +  DIA+   FI G  GET
Sbjct: 254 ESGCSSMLFGFETINSEALKTSRKGFNQVEKYNNTIEIFHKL--DIAVLGTFIFGLDGET 311

Query: 344 DDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQV 403
              F  T+  +              P  GTP    L+      +  RL+  + +      
Sbjct: 312 YKTFENTVQFIKDSEIDMVNLNMLYPYPGTPFRERLK------RENRLIEYEYENEWNTF 365

Query: 404 SFNDAC 409
           ++N   
Sbjct: 366 AYNKVM 371


>gi|223935846|ref|ZP_03627761.1| Radical SAM domain protein [bacterium Ellin514]
 gi|223895447|gb|EEF61893.1| Radical SAM domain protein [bacterium Ellin514]
          Length = 439

 Score = 93.1 bits (230), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 61/339 (17%), Positives = 116/339 (34%), Gaps = 38/339 (11%)

Query: 47  MFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVA 106
               +  E ++   DAD++          A         R +++       G     V+ 
Sbjct: 50  RLTEEYLEDIDFESDADVV----------ALSGQIMQFDRCKDISAKFRARGKKT--VLG 97

Query: 107 GCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIV 166
           G +     + +       + +V  +     PE+L     GK       +       L I 
Sbjct: 98  GYLPSMLPDRVEGFF---DAIVLGEGDEIWPEILNDIEQGKLKKRYQSTRSVDISNLPIP 154

Query: 167 DGGYNRKRGVTAF-LTIQEGCDKFCTFCVVPYTR-GIEISRSLSQVVDEARKLIDNGVCE 224
                +K  +  + +    GC   C +C +     G    R + Q++ +       G   
Sbjct: 155 RYDLIKKDRLVVYPVQATRGCPFTCNYCSIAAVHQGAHRKRPVEQILRDID---ATGSRN 211

Query: 225 ITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL 284
           I +   N+          E   F+D L++      +     TT +       L KA    
Sbjct: 212 INICDDNLC---------EDIRFADRLFTAMAGSPVRWGTQTTINVARHPGLLQKARASG 262

Query: 285 DVLMPYLHLPVQSGSDRILKSMNRR-HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGET 343
                 + L V++ S + L+ +N+  H   +Y +   RI      I+  +  I G P + 
Sbjct: 263 ---CTLMALGVETFSVKNLEDVNKTFHAVDKYAEGFRRIMDA--GISPHALIIFGLPDDK 317

Query: 344 DDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
            D F+ T+D ++ +    A  F  +P  GTP   M +++
Sbjct: 318 PDTFKKTVDYLENLKVPVAQIFILTPYPGTP---MGDRI 353


>gi|260574923|ref|ZP_05842925.1| magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative
           cyclase [Rhodobacter sp. SW2]
 gi|259022928|gb|EEW26222.1| magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative
           cyclase [Rhodobacter sp. SW2]
          Length = 585

 Score = 93.1 bits (230), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 70/384 (18%), Positives = 128/384 (33%), Gaps = 60/384 (15%)

Query: 43  RMEDMFFSQGYERVNSMDD-----------ADLI-----VLNTCHIREKAAEKVYSFLGR 86
            +       G+E +  +D            A LI     ++ T  I           +  
Sbjct: 28  YLAGSLRKAGFEDIVFLDAMTNFMDHDTLRAKLIELKPDIVGTTAITPA--------IYE 79

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
              +     +   D + V+ G  A     ++L  SP V+V+V  +    +  L      G
Sbjct: 80  AEEVLRIASEACPDAVRVLGGIHATFMYRQVLSESPTVDVIVRGEGEEIMVALANAVDEG 139

Query: 147 KRVVD----------------------TDYSVEDKFERLSIVDGGYNRKRGV---TAFLT 181
           +   D                      T   ++      +I++        +    A   
Sbjct: 140 RWPADRANIRGLAYREGTEIVATPAAPTIKDLDGIDPDWTILEWSKYIYTPLGVRVAIPN 199

Query: 182 IQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLI-DNGVCEITLLGQNVNAWRGKGL 240
           +  GC   C+FC           R   +VVDE  +L+ D+GV    L  +     R K +
Sbjct: 200 MARGCPFTCSFCSQWKFWRDYRVRDPKKVVDEIERLVNDHGVGFFILADEEPTINRKKFI 259

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300
           +  +      L    ++K  +  R T  +       L+  +    ++  ++ L  ++ + 
Sbjct: 260 EFCQELIDRGLP--DKVKWGINTRVTDIYR---DRELLTFYRRAGLV--HISLGTEAAAQ 312

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
             L   N+  T  E ++ I  +R    DI   + FIVG   ET +    T  +V      
Sbjct: 313 LKLDLFNKETTVAENKEAIRLLREA--DIFTEAQFIVGLDNETKETLEETFQMVWDWQPD 370

Query: 361 QAFSFKYSPRLGTPGS-NMLEQVD 383
            A    Y+P   TP    + +QV+
Sbjct: 371 LANWAMYTPWPFTPLFQELRDQVE 394


>gi|296282523|ref|ZP_06860521.1| magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative
           cyclase [Citromicrobium bathyomarinum JL354]
          Length = 541

 Score = 93.1 bits (230), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 59/312 (18%), Positives = 108/312 (34%), Gaps = 36/312 (11%)

Query: 99  GDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK----------- 147
            D + V+ G  A     ++L  +P ++V+V  +      +L    R G+           
Sbjct: 92  PDAVRVLGGVHATFMYRQVLTEAPHIDVIVRGEGEEIALDLFGAIRDGRWRQDREGIKGL 151

Query: 148 -----------RVVDTDYSVEDKFERLSIVDGGYNRKRGV---TAFLTIQEGCDKFCTFC 193
                         DT   +        ++D    +   +    A   +  GC   C+FC
Sbjct: 152 AFRDGERIVATPAADTVKDMSTLTPDWDVLDWNLYKYLPLGTRVAIPNLARGCPFTCSFC 211

Query: 194 VVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLY 252
                      R    VVDE  +L +  GV    L  +     R K ++  +      L 
Sbjct: 212 SQWKFWRDYRIRDPKDVVDEIEQLHERHGVGFFILADEEPTINRKKFIEFCQELIDRGLP 271

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
             +++K  +  R T  +       L+  +    ++  ++ L  ++ +   L   N+    
Sbjct: 272 --AKVKWGINTRVTDIYR---DRELLSFYRKAGLV--HVSLGTEAAAQMKLDRFNKETKV 324

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
            E +Q I  +R    DI + + FIVG   ET +    T  +        A    Y+P   
Sbjct: 325 EENKQAIRLLREA--DIFVEAQFIVGLDNETPETLEETYKMAWDWQPDLANWAMYTPWPF 382

Query: 373 TP-GSNMLEQVD 383
           TP    + +QV+
Sbjct: 383 TPLFEEIRDQVE 394


>gi|147668759|ref|YP_001213577.1| radical SAM domain-containing protein [Dehalococcoides sp. BAV1]
 gi|146269707|gb|ABQ16699.1| Radical SAM domain protein [Dehalococcoides sp. BAV1]
          Length = 494

 Score = 93.1 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 48/252 (19%), Positives = 92/252 (36%), Gaps = 17/252 (6%)

Query: 129 GPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAF-LTIQEGCD 187
           G + Y  +  L  + R G+  ++         + L                 L    GC 
Sbjct: 135 GEENYAEIQGLAWKDREGRVTINQPRPFIHNLDELPNPAWHLIDVPKYWDITLNTSRGCP 194

Query: 188 KFCTFC-VVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKC 245
             C+FC  +P+  G     S+ ++V +   L  N  V  I     N            + 
Sbjct: 195 FKCSFCYNIPFHHGHRADLSVERIVAQIEHLQKNYKVKFIRFFEDNFTF--------NRK 246

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
              +   ++  I   +++++ T    DMS+  +            + + V++GS R+L+ 
Sbjct: 247 RMREFCQTV--IDRRIKIKWDTESRADMSEEDVALMAKAG--CTSVGIGVETGSKRMLEY 302

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           +N+     E  +     R V+  I      ++  P ET +DF  T D++ ++        
Sbjct: 303 LNKGVDLDEMGRTF--WRFVKHGIMPRLYIMLAVPTETVEDFTETQDMLHRMEDPPFMYM 360

Query: 366 KYSPRLGTPGSN 377
           ++ P  GTP  N
Sbjct: 361 RFVPYPGTPLYN 372


>gi|15644349|ref|NP_229401.1| hypothetical protein TM1601 [Thermotoga maritima MSB8]
 gi|4982172|gb|AAD36668.1|AE001804_12 conserved hypothetical protein [Thermotoga maritima MSB8]
          Length = 551

 Score = 93.1 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 51/300 (17%), Positives = 100/300 (33%), Gaps = 40/300 (13%)

Query: 165 IVDGGYNRKRGVTAFLTIQEGCDKF--CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGV 222
           +V   +     V   + +  GC++   C+FC  P   G   SR +  ++ E   L   G 
Sbjct: 163 VVLEKHPNFPHVICEIEVSRGCERRTFCSFCTEPLLHGRLKSRDVQAILKEIESLYRAGC 222

Query: 223 CEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSD----CLI 278
                         G   +G K +       L E+    R            +     L+
Sbjct: 223 RAFRFGRAANILAFGSDRNGGKPS----PEILEELYSGTREVAPHLEVLHTDNANPSYLV 278

Query: 279 KAHGDLDVLMPY----------LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV--- 325
               +   ++                V+S  + +LK  N + +  E+ + I  +  +   
Sbjct: 279 TYEKECRKIVETIVRYNTPGDVFSFGVESFDENVLKKNNVQGSPEEFLKAIAVVNEIGGV 338

Query: 326 ----RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA------QAFSFKYSPRLGTPG 375
                P +    + I G PGET++  +     + +I         +    K     GTP 
Sbjct: 339 RVDGIPKLLPGVNLIFGLPGETEETLKKNYSYLKRI-LDEGYLLRRINIRKLLAYPGTPV 397

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACV---GQII-EVLIEKHGKEKGKLVGR 431
              L+     +K+      ++++RE+        V   G ++ +V++E   +E     GR
Sbjct: 398 YEYLKNKKHRIKSYLHDQWKRRIREEIDREMLKRVFPAGTVLKKVIVE--YREGKTSFGR 455


>gi|147668926|ref|YP_001213744.1| radical SAM domain-containing protein [Dehalococcoides sp. BAV1]
 gi|146269874|gb|ABQ16866.1| Radical SAM domain protein [Dehalococcoides sp. BAV1]
          Length = 494

 Score = 92.7 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 47/252 (18%), Positives = 95/252 (37%), Gaps = 17/252 (6%)

Query: 129 GPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAF-LTIQEGCD 187
           G + Y  +  L  + R G+ +++         + L                 L    GC 
Sbjct: 135 GEENYAEIQGLAWKDREGRVIINQPRPFIHNLDELPNPAWHLIDVPKYWDITLNTSRGCP 194

Query: 188 KFCTFC-VVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKC 245
             C+FC  +P+ +G     S+ +++ +   L  N  V  I     N            + 
Sbjct: 195 FKCSFCYNIPFHQGHRADLSVERIIAQIEHLQKNYKVKFIRFFEDNFTF--------NRK 246

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
              +   ++  I+  +++++ T    DMS+  +            + + V++GS R+L+ 
Sbjct: 247 RMREFCQTV--IERRIKIKWDTESRADMSEEDVALMAKAG--CTSVGIGVETGSKRMLEY 302

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           +N+     E  +     R V+  I      ++  P ET +DF  T D++ ++        
Sbjct: 303 LNKGVDLDEMGRTF--WRFVKHGIMPRLYIMLAVPTETVEDFTETQDMLHRMEDPPFMYM 360

Query: 366 KYSPRLGTPGSN 377
           ++ P  GTP  N
Sbjct: 361 RFVPYPGTPLYN 372


>gi|299136986|ref|ZP_07030169.1| hopanoid biosynthesis associated radical SAM protein HpnJ
           [Acidobacterium sp. MP5ACTX8]
 gi|298601501|gb|EFI57656.1| hopanoid biosynthesis associated radical SAM protein HpnJ
           [Acidobacterium sp. MP5ACTX8]
          Length = 492

 Score = 92.7 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 54/318 (16%), Positives = 102/318 (32%), Gaps = 41/318 (12%)

Query: 90  LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNV---------VVGPQTYYRLPELL 140
           L  +  K    + +   G     + +  L    +++          VV       L E+L
Sbjct: 89  LARAIKKANPTMKICFVGPPVTTDPDRALNECEVLDFICRREFDFSVVEFANGKPLNEIL 148

Query: 141 E---RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT---------AFLTI--QEGC 186
               +   G      D    +  + +      Y R   VT          ++++    GC
Sbjct: 149 GISYKDANGVIQHTPDRPQVEDLDAMPWATKIYKRDMDVTRYNVPFLLHPYISLYSTRGC 208

Query: 187 DKFCTFCVVPYTRGIE--ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK 244
              CTFC+ P T        RS   V             E+    QN    +    D + 
Sbjct: 209 PAQCTFCLWPQTLSGHAWRKRSSDDVAA-----------EMAWAKQNFPDVKEFFFDDDT 257

Query: 245 CTFSDLLY-SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
                +    L E    + + ++ +         +KA  +       L +  +SG  +IL
Sbjct: 258 FNIQKVRTIELCEKLKPLGITWSCTSRVTTDRDTLKAMKEAG--CRLLIVGFESGDPQIL 315

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           K++ +  T    R  +     +   + I +DFI+G PGET +    T++   ++      
Sbjct: 316 KNIKKGATVERARDFVKDCHDL--GLIIHADFILGLPGETKESIWNTINFAKQLDCETIQ 373

Query: 364 SFKYSPRLGTPGSNMLEQ 381
                   GT   +  ++
Sbjct: 374 VSVAHAYPGTEFYDYAKR 391


>gi|196232764|ref|ZP_03131615.1| hopanoid biosynthesis associated radical SAM protein HpnJ
           [Chthoniobacter flavus Ellin428]
 gi|196223224|gb|EDY17743.1| hopanoid biosynthesis associated radical SAM protein HpnJ
           [Chthoniobacter flavus Ellin428]
          Length = 476

 Score = 92.7 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 65/317 (20%), Positives = 118/317 (37%), Gaps = 44/317 (13%)

Query: 88  RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL-------- 139
             L  +   +  D+ V + G  A    EE LR S  ++ V   +  +   ++        
Sbjct: 89  AELAEALKLQNPDVRVGLVGAHAAVLPEETLRASEAIDFVGRKEFDFTCRDVALGKPLAE 148

Query: 140 ---LERARFGKRVVDTDYSVEDKFERLSIVDGGYNR----KRGVTAFLT-------IQEG 185
              L   R G+ V + + ++ + F+ L  V   Y R    +R    +L           G
Sbjct: 149 IDGLSFRRDGQIVHNAERAMIESFDELPSVMDVYARHLEIERYFIGYLKHPYVSHYTGRG 208

Query: 186 CDKFCTFCVVPYTRGIEISR--SLSQV---VDEARKLIDNGVCEITLLGQNVNAWRGKGL 240
           C   CTFC+ P T G    R  S + V   +  A++L    V E         A++ +  
Sbjct: 209 CPAQCTFCLWPQTVGGHKYRAKSPAGVAREMAHAQRLFPQ-VKEFFFDDDTFTAYQPR-- 265

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300
                        ++   G + + ++ +   +++   +K   D    +  L +  +SG  
Sbjct: 266 ----------AREIARELGKLGMTWSCNARANVNYETLKTMRD--NGLRLLLVGYESGVQ 313

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
           RIL ++ +     E R+  +  R +   I I   FI+G PGET +  R T++    +   
Sbjct: 314 RILDNIKKGIRIEEAREFTENCRKL--GITIHGTFILGLPGETPETIRETIEYAKSLDVF 371

Query: 361 QAFSFKYSPRLGTPGSN 377
                  +P  GT    
Sbjct: 372 SIQVSLAAPYPGTELYR 388


>gi|171316947|ref|ZP_02906154.1| hopanoid biosynthesis associated radical SAM protein HpnJ
           [Burkholderia ambifaria MEX-5]
 gi|171097871|gb|EDT42691.1| hopanoid biosynthesis associated radical SAM protein HpnJ
           [Burkholderia ambifaria MEX-5]
          Length = 473

 Score = 92.7 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 63/346 (18%), Positives = 123/346 (35%), Gaps = 51/346 (14%)

Query: 54  ERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAE 113
           E +   +D DL++++T              L +++            +LV + G     +
Sbjct: 61  ETLKIANDYDLVIIHTSTPSFPTDAMFAQDLKKMK----------PSMLVGMVGAKVMVD 110

Query: 114 GEEILRRSPIVNVVVGPQTYYRLPELLE------------RARFGKRVVDTDYSVEDKFE 161
               L  S  ++ V   +  +   E+ E            RA+ G    +    + +  +
Sbjct: 111 PHNSLTASEAIDFVCREEFDFTCKEIAEGKPFPQIKGLSWRAKDGSIEHNEARPILENMD 170

Query: 162 RLSIVDGGYNRKRGV---------TAFLTI--QEGCDKFCTFCVVPYTRG--IEISRSLS 208
            L  V   Y R   +           +++I    GC   CTFC+ P T       +RS+ 
Sbjct: 171 ELPFVAPVYKRDLKIDNYFIGYLNYPYVSIYTGRGCKSRCTFCLWPQTVSGHRYRTRSVE 230

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK-GLVRLRYTT 267
            V+ EA+            +  N+   +    D +  T          I  G + + ++ 
Sbjct: 231 NVLAEAK-----------WIRDNMPEVKELMFDDDTFTDDLPRAEAIAIGLGKLGMTWSC 279

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
           +   ++    +K   +    +  L +  +SG D+IL ++ +       R+     + +  
Sbjct: 280 NAKANVPYKTLKVMKE--NGLRLLLVGFESGDDQILVNIKKGVRTDFARRFSADCKKL-- 335

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
            I I   FI+G PGET +  R T++   +I          +P  GT
Sbjct: 336 GIKIHGTFILGLPGETQETIRKTIEYAKEINPHTIQVSLAAPYPGT 381


>gi|260892239|ref|YP_003238336.1| Radical SAM domain protein [Ammonifex degensii KC4]
 gi|260864380|gb|ACX51486.1| Radical SAM domain protein [Ammonifex degensii KC4]
          Length = 433

 Score = 92.7 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 55/277 (19%), Positives = 97/277 (35%), Gaps = 27/277 (9%)

Query: 103 VVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFER 162
           VV+ G    A  EE  +     + VV  +     P+++  A+ G+      +      E 
Sbjct: 86  VVLGGIHPTALPEEAAQ---YADAVVIGEAEGLWPQVIADAKAGRLKRFYRHPEGKFPEL 142

Query: 163 LSIVDGGYNRKRG---VTAFLTIQEGCDKFCTFCVVPYTRGI-EISRSLSQVVDEARKLI 218
             +       K+    +T+ + +  GC   C FC V    G    +R + +V++E   L 
Sbjct: 143 KDVRPRRDLLKKDAYVLTSTVQVTRGCPYGCAFCSVTRFFGRTYRTRPIQEVLEEVASLK 202

Query: 219 DNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDC-L 277
           +     I  +  N+         G       L  +L   KGL +   + +    + D  L
Sbjct: 203 E---KVIIFVDDNIM--------GLPSYARRLFEAL---KGLGKHWLSQASLPQLQDETL 248

Query: 278 IKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH-TAYEYRQIIDRIRSVRPDIAISSDFI 336
           IK   +       L +  +S S   LK + + H     Y + I R+      I +   FI
Sbjct: 249 IKLAAESG--CKGLFVGFESLSPEELKRVRKFHNDTRRYVETIKRLHKY--GIGVIGSFI 304

Query: 337 VGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
           VG   +    F    +   +       +   +P  GT
Sbjct: 305 VGLDSDDKSVFERIKEFAFRAKLDLLQASILTPLPGT 341


>gi|253568255|ref|ZP_04845666.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Bacteroides
           sp. 1_1_6]
 gi|251842328|gb|EES70408.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Bacteroides
           sp. 1_1_6]
          Length = 102

 Score = 92.7 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 23/106 (21%), Positives = 44/106 (41%), Gaps = 6/106 (5%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEKVYSF 83
           R  + + GC  N+ DS ++       GY   +  +  + ++ V+NTC     A E+  + 
Sbjct: 1   RIDIITLGCSKNLVDSEQLMRQLEEAGYSVTHDTENPEGEIAVINTCGFIGDAKEESINM 60

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG 129
           +      K      G    + V GC+++   +E+    P V+   G
Sbjct: 61  ILEFAERKEE----GDLKKLFVMGCLSERYLQELAIEIPQVDKFYG 102


>gi|297569110|ref|YP_003690454.1| Radical SAM domain protein [Desulfurivibrio alkaliphilus AHT2]
 gi|296925025|gb|ADH85835.1| Radical SAM domain protein [Desulfurivibrio alkaliphilus AHT2]
          Length = 475

 Score = 92.7 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 60/347 (17%), Positives = 110/347 (31%), Gaps = 49/347 (14%)

Query: 99  GDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK----------- 147
            ++  V+ G    A  E+IL++ P V+  V  +    L +LL+ A               
Sbjct: 99  PEIKAVLGGVHVSAMKEKILQQYPEVDCAVVGEGELPLAQLLQGAPLASIEGLVFRTDSG 158

Query: 148 --------RVVDTDYSVEDKFERLSIVDGGY-----NRKRGVTAFLTIQEGCDKFCTFCV 194
                   R V+ D      +E+L      Y     N      A      GC   C++C 
Sbjct: 159 VHFTGLQGRGVELDDLPLPAYEKLRGYPEAYQLPIFNYPTHPNASCLSSRGCPYSCSYCD 218

Query: 195 VPYTRGIEISRSLSQVVDEARK-LIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS 253
               R      S   V    +      GV  +          RG+          +L   
Sbjct: 219 RSVFRRSFKYNSADYVYRHMQHLRQRWGVRHLNFYDDQFTFHRGR--------VVELCRR 270

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
           L E + L            +   L+            + L +++G   +L    +     
Sbjct: 271 LIE-EPLNMTFNCAVRAEHVDPELLALMKKAG--CWMISLGIETGDPDLLAQHRQNADLN 327

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
              ++I  I      I +    ++G PGET++  R +M  V  +        K++P  G+
Sbjct: 328 LLAKVIHDIHRA--GIRVKGLLMLGLPGETEESVRRSMRYVFSLPIDDFNLAKFTPFPGS 385

Query: 374 PGSNMLEQVDE-NVKAERLLCLQ----------KKLREQQVSFNDAC 409
           P    + ++ E      ++ C+           ++L E  + F  + 
Sbjct: 386 PIYEKIHELGEFEEDYRKMDCMNFVFVTKGMTRQRLEELFLEFYRSH 432


>gi|39995358|ref|NP_951309.1| BchE/P-methylase family protein [Geobacter sulfurreducens PCA]
 gi|39982120|gb|AAR33582.1| BchE/P-methylase family protein [Geobacter sulfurreducens PCA]
          Length = 428

 Score = 92.7 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 50/292 (17%), Positives = 96/292 (32%), Gaps = 29/292 (9%)

Query: 88  RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147
           R  + +       + VV+ G       +E L      + VV  +       LL+    G+
Sbjct: 73  RAYEIADRFRARGVPVVMGGIHPTVLPDEAL---EHADAVVVGEAEPVWAHLLDDLLAGR 129

Query: 148 RVVDTDYSVEDKFERLSIVDGGYN-----RKRGVTAFLTIQEGCDKFCTFC-VVPYTRGI 201
             +   Y      + +             R+   T  +    GC   C+FC V PY    
Sbjct: 130 --LAPVYRAPVPTDEILSAPWPRREILAGRRYLTTQTVQASRGCPYDCSFCTVTPYFGRT 187

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
              R    ++ E R         +  L  N+         G+      +L  L+E+   V
Sbjct: 188 FRYRDPDDILAEIRSFRR---KLVVFLDDNLL--------GDPAKARPILRGLAEMN--V 234

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R    T+        L+K   D   +  ++ +   +G+   +     R++      ++ R
Sbjct: 235 RWGSQTNLRFAEDPELLKLVADSGCIGLFVGIESVTGAHANMAKSGTRYSQA---DLMKR 291

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
           +R     I + +  I GF    +  F  T+  +++   +       +P  GT
Sbjct: 292 VRDA--GIILETSIIFGFDDHDESVFETTVRFLEECSPSVPTFHILTPYPGT 341


>gi|221201391|ref|ZP_03574430.1| hopanoid biosynthesis associated radical SAM protein HpnJ
           [Burkholderia multivorans CGD2M]
 gi|221208871|ref|ZP_03581869.1| hopanoid biosynthesis associated radical SAM protein HpnJ
           [Burkholderia multivorans CGD2]
 gi|221214047|ref|ZP_03587020.1| hopanoid biosynthesis associated radical SAM protein HpnJ
           [Burkholderia multivorans CGD1]
 gi|221166224|gb|EED98697.1| hopanoid biosynthesis associated radical SAM protein HpnJ
           [Burkholderia multivorans CGD1]
 gi|221171327|gb|EEE03776.1| hopanoid biosynthesis associated radical SAM protein HpnJ
           [Burkholderia multivorans CGD2]
 gi|221178659|gb|EEE11067.1| hopanoid biosynthesis associated radical SAM protein HpnJ
           [Burkholderia multivorans CGD2M]
          Length = 473

 Score = 92.7 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 64/346 (18%), Positives = 123/346 (35%), Gaps = 51/346 (14%)

Query: 54  ERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAE 113
           E +   +D DL++++T              L +++            +LV + G     +
Sbjct: 61  ETLKIANDYDLVIIHTSTPSFPTDAMFAQDLKKMK----------PSMLVGMVGAKVMVD 110

Query: 114 GEEILRRSPIVNVVVGPQTYYRLPELLE------------RARFGKRVVDTDYSVEDKFE 161
               L  S  ++ V   +  Y   EL E            RA+ G    +    + +  +
Sbjct: 111 PHNSLTASDAIDFVCREEFDYTCKELAEGKPFAEIKGLSWRAKDGSIEHNEARPILENMD 170

Query: 162 RLSIVDGGYNRKRGV---------TAFLTI--QEGCDKFCTFCVVPYTRG--IEISRSLS 208
            L  V   Y R   +           +++I    GC   CTFC+ P T       +RS+ 
Sbjct: 171 ELPFVAPVYKRDLKIENYFIGYLNYPYVSIYTGRGCKSRCTFCLWPQTVSGHRYRTRSVE 230

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK-GLVRLRYTT 267
            V+ EA+            +  N+   +    D +  T          I  G + + ++ 
Sbjct: 231 NVLAEAK-----------WIRDNMPEVKELMFDDDTFTDDLPRAEAIAIGLGKLGITWSC 279

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
           +   ++    +K   +    +  L +  +SG D+IL ++ +       R+     + +  
Sbjct: 280 NAKANVPYKTLKVMKE--NGLRLLLVGFESGDDQILVNIKKGVRTDFARRFSADCKKL-- 335

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
            I I   FI+G PGET +  + T++   +I          +P  GT
Sbjct: 336 GIKIHGTFILGLPGETKETIKKTIEYAKEINPHTIQVSLAAPYPGT 381


>gi|161669194|gb|ABX75449.1| cdk5 regulatory subunit associated protein 1 [Lycosa singoriensis]
          Length = 134

 Score = 92.7 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 2/85 (2%)

Query: 2   GLFIKLIGVAHMVSQIVDQCIVP--QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSM 59
           G   K+    ++  +IV   I+P  Q+ +VK++GC  N  DS  M  +    GY   +  
Sbjct: 34  GPVSKVKRNNNVNYEIVADSIIPGTQKVYVKTWGCAHNSSDSEYMAGLLNESGYIITDDS 93

Query: 60  DDADLIVLNTCHIREKAAEKVYSFL 84
             AD+ +LN+C ++  A +   + +
Sbjct: 94  ATADVWLLNSCTVKNPAEDHFRNVI 118


>gi|294791697|ref|ZP_06756845.1| putative radical SAM domain protein [Veillonella sp. 6_1_27]
 gi|294456927|gb|EFG25289.1| putative radical SAM domain protein [Veillonella sp. 6_1_27]
          Length = 453

 Score = 92.7 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 40/245 (16%), Positives = 86/245 (35%), Gaps = 20/245 (8%)

Query: 136 LPELLERARFGKRVVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDKFCTFC 193
            P+++E A+ G+       +  +  + +     D            ++    C   C FC
Sbjct: 125 WPQIIEDAKHGRLQSQYVSAPLESGDDIASPAYDLIDKTDYLWYNVVSTSRSCPHKCDFC 184

Query: 194 VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS 253
                    I+R++  V+ + ++L   G   I  +  N          G        L  
Sbjct: 185 YNSSGTHQYINRNIEDVLRDIKRL---GTKHIMFIDDNFI--------GNISWTKQFLER 233

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR-RHTA 312
           +  +K       T          L+    +       L +  +S S + L S+++ ++  
Sbjct: 234 IKPLKLNWNAAVT--MKIGQYPELMDLMKETG--CQSLFIGFESISPKSLSSVHKMQNNR 289

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
            E+ ++I+ +      I +++ F+ G  G+T + F+ T+D +         S   +P  G
Sbjct: 290 EEFERLINELHKR--GIMVNASFVFGLDGDTPETFKNTLDWIISQKIDTITSHIVTPYPG 347

Query: 373 TPGSN 377
           T    
Sbjct: 348 TEFYK 352


>gi|325524877|gb|EGD02822.1| hopanoid biosynthesis associated radical SAM protein HpnJ
           [Burkholderia sp. TJI49]
          Length = 382

 Score = 92.7 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 64/346 (18%), Positives = 123/346 (35%), Gaps = 51/346 (14%)

Query: 54  ERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAE 113
           E +   +D DL++++T              L +++            +LV + G     +
Sbjct: 61  ETLKIANDYDLVIIHTSTPSFPTDAMFAQDLKKMK----------PSMLVGMVGAKVMVD 110

Query: 114 GEEILRRSPIVNVVVGPQTYYRLPELLE------------RARFGKRVVDTDYSVEDKFE 161
               L  S  ++ V   +  Y   EL E            RA+ G    +    + +  +
Sbjct: 111 PHNSLTASDAIDFVCREEFDYTCKELAEGKPFPEIKGLSWRAKDGSIEHNEARPILENMD 170

Query: 162 RLSIVDGGYNRKRGV---------TAFLTI--QEGCDKFCTFCVVPYTRG--IEISRSLS 208
            L  V   Y R   +           +++I    GC   CTFC+ P T       +RS+ 
Sbjct: 171 ELPFVAPVYKRDLKIDNYFIGYLNYPYVSIYTGRGCKSRCTFCLWPQTVSGHRYRTRSVE 230

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK-GLVRLRYTT 267
            V+ EA+            +  N+   +    D +  T          I  G + + ++ 
Sbjct: 231 NVLAEAK-----------WIRDNMPEVKELMFDDDTFTDDLPRAEAIAIGLGKLGMTWSC 279

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
           +   ++    +K   +    +  L +  +SG D+IL ++ +       R+     + +  
Sbjct: 280 NAKANVPYKSLKIMKE--NGLRLLLVGFESGDDQILVNIKKGVRTDFARRFSADCKKL-- 335

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
            I I   FI+G PGET +  + T++   +I          +P  GT
Sbjct: 336 GIKIHGTFILGLPGETQETIKKTIEYAKEINPHTIQVSLAAPYPGT 381


>gi|206559438|ref|YP_002230199.1| radical SAM superfamily protein [Burkholderia cenocepacia J2315]
 gi|198035476|emb|CAR51354.1| radical SAM superfamily protein [Burkholderia cenocepacia J2315]
          Length = 473

 Score = 92.7 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 63/346 (18%), Positives = 123/346 (35%), Gaps = 51/346 (14%)

Query: 54  ERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAE 113
           E +   +D DL++++T              L +++            +LV + G     +
Sbjct: 61  ETLKIANDYDLVIIHTSTPSFPTDAMFAQDLKKMK----------PSMLVGMVGAKVMVD 110

Query: 114 GEEILRRSPIVNVVVGPQTYYRLPELLE------------RARFGKRVVDTDYSVEDKFE 161
               L  S  ++ V   +  +   EL E            RA+ G    +    + +  +
Sbjct: 111 PHNSLTASEAIDFVCREEFDFTCKELAEGKPFAEIKGLSWRAKDGSIEHNEARPILENMD 170

Query: 162 RLSIVDGGYNRKRGV---------TAFLTI--QEGCDKFCTFCVVPYTRG--IEISRSLS 208
            L  V   Y R   +           +++I    GC   CTFC+ P T       +RS+ 
Sbjct: 171 ELPFVAPVYKRDLKIDNYFIGYLNYPYVSIYTGRGCKSRCTFCLWPQTVSGHRYRTRSVE 230

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK-GLVRLRYTT 267
            V+ EA+            +  N+   +    D +  T          I  G + + ++ 
Sbjct: 231 NVLAEAK-----------WIRDNMPEVKELMFDDDTFTDDLPRAEAIAIGLGKLGITWSC 279

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
           +   ++    +K   +    +  L +  +SG D+IL ++ +       R+     + +  
Sbjct: 280 NAKANVPYKTLKVMKE--NGLRLLLVGFESGDDQILVNIKKGVRTDFARRFSADCKKL-- 335

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
            I I   FI+G PGET +  + T++   +I          +P  GT
Sbjct: 336 GIKIHGTFILGLPGETQETIKKTIEYAKEINPHTIQVSLAAPYPGT 381


>gi|78065755|ref|YP_368524.1| radical SAM family protein [Burkholderia sp. 383]
 gi|77966500|gb|ABB07880.1| Radical SAM family protein [Burkholderia sp. 383]
          Length = 480

 Score = 92.7 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 63/346 (18%), Positives = 123/346 (35%), Gaps = 51/346 (14%)

Query: 54  ERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAE 113
           E +   +D DL++++T              L +++            +LV + G     +
Sbjct: 68  ETLKIANDYDLVIIHTSTPSFPTDAMFAQDLKKMK----------PSMLVGMVGAKVMVD 117

Query: 114 GEEILRRSPIVNVVVGPQTYYRLPELLE------------RARFGKRVVDTDYSVEDKFE 161
               L  S  ++ V   +  Y   E+ E            RA+ G    +    + +  +
Sbjct: 118 PHNSLTASESIDFVCREEFDYTCKEIAEGKPFPEIKGLSWRAKDGSIEHNEARPILENMD 177

Query: 162 RLSIVDGGYNRKRGV---------TAFLTI--QEGCDKFCTFCVVPYTRG--IEISRSLS 208
            L  V   Y R   +           +++I    GC   CTFC+ P T       +RS+ 
Sbjct: 178 ELPFVAPVYKRDLKIDNYFIGYLNYPYVSIYTGRGCKSRCTFCLWPQTVSGHRYRTRSVE 237

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK-GLVRLRYTT 267
            V+ EA+            +  N+   +    D +  T          I  G + + ++ 
Sbjct: 238 NVLAEAK-----------WIRDNMPEVKELMFDDDTFTDDLPRAEAIAIGLGKLGMTWSC 286

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
           +   ++    +K   +    +  L +  +SG D+IL ++ +       R+     + +  
Sbjct: 287 NAKANVPYKTLKVMKE--NGLRLLLVGFESGDDQILVNIKKGVRTDFARRFSADCKKL-- 342

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
            I I   FI+G PGET +  + T++   +I          +P  GT
Sbjct: 343 GIKIHGTFILGLPGETQETIKKTIEYAKEINPHTIQVSLAAPYPGT 388


>gi|307153815|ref|YP_003889199.1| LuxR family two component transcriptional regulator [Cyanothece sp.
           PCC 7822]
 gi|306984043|gb|ADN15924.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 7822]
          Length = 744

 Score = 92.3 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 54/386 (13%), Positives = 105/386 (27%), Gaps = 58/386 (15%)

Query: 43  RMEDMFFSQGYERVNSMDD----------ADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92
            +       G++ +  +D           AD+I  N   +    A     +         
Sbjct: 28  YVGGALKQAGFDNIRFVDAMTNYIPDDVLADIIAKNQPDVVLATAITPMIYQSE--RTLQ 85

Query: 93  SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVV-----------------GPQTYYR 135
              +   +   ++ G        E+L  +P V+ ++                 G     R
Sbjct: 86  IVKEVCPNAKTIMGGVHPTYMYNEVLNEAPWVDYIIRGEGEEITVNLLSAIANGTDVKDR 145

Query: 136 LPEL-LERARFGKRVVDTDYSVEDKFERLSIVD-------GGYNRKRGVTAFLTIQEGCD 187
              L +     G+ V    +      + L+            Y       A      GC 
Sbjct: 146 HNILGIAFCENGQVVATPAHPPIKNLDTLTPDWTLLDWNKYIYTPLNVRVAVPNFARGCP 205

Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTF 247
             C FC          SR+    VDE   L+        +L               K  F
Sbjct: 206 FRCRFCSQWKFWRKYRSRTPKNFVDEIEYLVKEHNVGFFILADEEPTI-------TKPRF 258

Query: 248 SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMP----YLHLPVQSGSDRIL 303
             L   L     + R              +++   +L +       ++ L  ++ +   L
Sbjct: 259 VALCKEL-----IERKLNVHWGINTRVTDILRDEKELPLYRQAGLVHVSLGTEAAAQLNL 313

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
               +  T  + ++ +  +R     I     +I+G   ET +    T  +          
Sbjct: 314 NVFRKETTIEDNKRAVRLLREN--GIVAEVQYIMGLENETLETIEETYRMARDWKADMTN 371

Query: 364 SFKYSPRLGTPGSNMLEQVDENVKAE 389
              ++P    P S + E V + V+  
Sbjct: 372 WNMFTPW---PFSELFEDVGDKVEVR 394


>gi|254457268|ref|ZP_05070696.1| cobalamin B12-binding:Radical SAM [Campylobacterales bacterium GD
           1]
 gi|207086060|gb|EDZ63344.1| cobalamin B12-binding:Radical SAM [Campylobacterales bacterium GD
           1]
          Length = 478

 Score = 92.3 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 40/254 (15%), Positives = 81/254 (31%), Gaps = 18/254 (7%)

Query: 167 DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARK-LIDNGVCEI 225
              ++  R   A  +   GC   C FC            S  +V +  +    + GV  +
Sbjct: 195 PAIFDYPRAPVATYSASRGCPFKCEFCDTSTFGSKIRYNSPGKVYEIMKHLSTEYGVKHL 254

Query: 226 TLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLD 285
             +     A                L  L     +      T+    +    +       
Sbjct: 255 QFVDDLFVAN---------NAHVLRLCELLIANKIDMTWSCTARVDTVKPETLAMMKKAG 305

Query: 286 VLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDD 345
                +   ++SGSD +L+ M +  TA    + +         I +   F++G+PGET +
Sbjct: 306 --CWEISFGLESGSDEMLREMKKSITAEVSARAVKWTSEA--GIRVKGLFMLGYPGETKE 361

Query: 346 DFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVS 404
             + T + +  +        K++P  G+P    +          +RL  +      +  +
Sbjct: 362 SVQTTKEFIKGLPLTTMNLSKFTPYPGSPIYKKLYGTSIREEDWDRLNGMN--FVYKAEA 419

Query: 405 FNDACVGQII-EVL 417
           F    + +   EV+
Sbjct: 420 FTQEELDKEYKEVI 433


>gi|170703218|ref|ZP_02894022.1| hopanoid biosynthesis associated radical SAM protein HpnJ
           [Burkholderia ambifaria IOP40-10]
 gi|170131868|gb|EDT00392.1| hopanoid biosynthesis associated radical SAM protein HpnJ
           [Burkholderia ambifaria IOP40-10]
          Length = 473

 Score = 92.3 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 62/353 (17%), Positives = 124/353 (35%), Gaps = 54/353 (15%)

Query: 50  SQGYERVNSMDDA---DLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVA 106
           + G     ++  A   DL++++T              L +++            +LV + 
Sbjct: 54  ADGLSVEETLKTANDYDLVIIHTSTPSFPTDAMFAQDLKKMK----------PSMLVGMV 103

Query: 107 GCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE------------RARFGKRVVDTDY 154
           G     +    L  S  ++ V   +  +   E+ E            RA+ G    +   
Sbjct: 104 GAKVMVDPHNSLTASDAIDFVCREEFDFTCKEIAEGKPFPEIKGLSWRAKDGSIEHNEAR 163

Query: 155 SVEDKFERLSIVDGGYNRKRGV---------TAFLTI--QEGCDKFCTFCVVPYTRG--I 201
            + +  + L  V   Y R   +           +++I    GC   CTFC+ P T     
Sbjct: 164 PILENMDELPFVAPVYKRDLKIDNYFIGYLNYPYVSIYTGRGCKSRCTFCLWPQTVSGHR 223

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK-GL 260
             +RS+  V+ EA+            +  N+   +    D +  T          I  G 
Sbjct: 224 YRTRSVENVLAEAK-----------WIRDNMPEVKELMFDDDTFTDDLPRAEAIAIGLGK 272

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
           + + ++ +   ++    +K   +    +  L +  +SG D+IL ++ +       R+   
Sbjct: 273 LGMTWSCNAKANVPYKTLKVMKE--NGLRLLLVGFESGDDQILVNIKKGVRTDFARRFSA 330

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
             + +   I I   FI+G PGET +  + T++   +I          +P  GT
Sbjct: 331 DCKKL--GIKIHGTFILGLPGETQETIKKTIEYAKEINPHTIQVSLAAPYPGT 381


>gi|170289053|ref|YP_001739291.1| radical SAM domain-containing protein [Thermotoga sp. RQ2]
 gi|170176556|gb|ACB09608.1| Radical SAM domain protein [Thermotoga sp. RQ2]
          Length = 551

 Score = 92.3 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 51/300 (17%), Positives = 100/300 (33%), Gaps = 40/300 (13%)

Query: 165 IVDGGYNRKRGVTAFLTIQEGCDKF--CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGV 222
           +V   +     V   + +  GC++   C+FC  P   G   SR +  ++ E   L   G 
Sbjct: 163 VVLEKHPNFPHVICEIEVSRGCERRTFCSFCTEPLLHGRLKSRDVQAILKEIESLYRAGC 222

Query: 223 CEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSD----CLI 278
                         G   +G K +       L E+    R            +     L+
Sbjct: 223 RAFRFGRAANILAFGSDRNGGKPS----PEILEELYSGTREVAPHLEVLHTDNANPSYLV 278

Query: 279 KAHGDLDVLMPY----------LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV--- 325
               +   ++                V+S  + +LK  N + +  E+ + I  +  +   
Sbjct: 279 TYEKECRKIVETIVRYNTPGDVFSFGVESFDENVLKKNNVQGSPEEFLKAIAVVNEIGGV 338

Query: 326 ----RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA------QAFSFKYSPRLGTPG 375
                P +    + I G PGET++  +     + +I         +    K     GTP 
Sbjct: 339 RVDGIPKLLPGVNLIFGLPGETEETLKKNYSYLKRI-LDEGYLLRRINIRKLLAYPGTPV 397

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACV---GQII-EVLIEKHGKEKGKLVGR 431
              L+     +K+      ++++RE+        V   G ++ +V++E   +E     GR
Sbjct: 398 YEYLKNKKHRIKSYLHDQWKRRIREEIDREMLKRVFPAGTVLKKVIVE--YREGKISFGR 455


>gi|159041666|ref|YP_001540918.1| radical SAM domain-containing protein [Caldivirga maquilingensis
           IC-167]
 gi|157920501|gb|ABW01928.1| Radical SAM domain protein [Caldivirga maquilingensis IC-167]
          Length = 470

 Score = 92.3 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 63/371 (16%), Positives = 118/371 (31%), Gaps = 59/371 (15%)

Query: 44  MEDMFFSQGYE--RVNSMDDADLIVLNTCHIREKAAE---------KVYSFLGRIRNLKN 92
           +  +    G+E   ++S  +     ++      +             +   + +  +   
Sbjct: 32  IAAVLEKAGHEVKIIDSPTEG----IDLGAFINEVKAWSPDIVGLTSLTPTIYKAYDTVK 87

Query: 93  SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF------- 145
           +  +   DL V++ G  A    EE L     V+VVV  +  Y   +L+            
Sbjct: 88  AIKEYDKDLPVIMGGPHASFMYEEALNN--GVDVVVRGEGEYTTLDLVNTIEKTGMNRNG 145

Query: 146 ------------GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAF--------LTIQEG 185
                       G+ +   D       + L             T F        +    G
Sbjct: 146 LKEINGIVFRSGGEIIKTRDRPPIRNLDELPFPARHLLPMDKYTIFGKPIKIIHVMASRG 205

Query: 186 CDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGE 243
           C   C+FC   Y  G     RS   V DE    ++  G   I          +    +  
Sbjct: 206 CPYGCSFCSTSYYWGRLIRYRSAKNVADEIEDAVNKYGANTIVFTDDEFTLGKRFVYEF- 264

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
                +L     +I      R  T   + MS+ L             L+  V+S S   +
Sbjct: 265 ---LRELEERKLDINFSCGSRVDTIDKKMMSELL-------RHGCTALYFGVESASQDTI 314

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
             + ++ T  +  ++ + +  ++  +   + F++GFP ET DD + T     K+  + A 
Sbjct: 315 NRIGKKITIEQAIKVFEWVHELK--VNAVASFVIGFPWETIDDMKNTAKFAVKLNPSYAQ 372

Query: 364 SFKYSPRLGTP 374
               +P  GTP
Sbjct: 373 FTVATPYPGTP 383


>gi|329115082|ref|ZP_08243837.1| Putative methyltransferase [Acetobacter pomorum DM001]
 gi|326695525|gb|EGE47211.1| Putative methyltransferase [Acetobacter pomorum DM001]
          Length = 476

 Score = 92.3 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 60/347 (17%), Positives = 124/347 (35%), Gaps = 47/347 (13%)

Query: 55  RVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG 114
            +  + + DL++L+T      +  K       ++++         +L + + G     + 
Sbjct: 64  ILEDVKNRDLVILHTST---PSFAKDVEVAQMLKDV-------NPNLKIGMVGAKVAVQP 113

Query: 115 EEILRRSPIVNVVVGPQTYYRLPELLE------------RARFGKRVVDTDYSVEDKFER 162
           EE L +   ++ V   +  Y + E+ E            R + G+ + + D ++ +  + 
Sbjct: 114 EESLLKGAPIDFVARNEFDYTIKEIAEGRDFKDVDGITWRNKDGEIIANRDRAMIEDMDS 173

Query: 163 LSIVDGGYNRKRGVTAFLT-----------IQEGCDKFCTFCVVPYTRGIEISRSLSQVV 211
           L  V   Y R   +  +                GC   CTFC+ P T G    R+     
Sbjct: 174 LPFVTEVYKRDLRIEDYFIGYLMHPYISIYTGRGCKSRCTFCLWPQTVGGHRYRT----- 228

Query: 212 DEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLL-YSLSEIKGLVRLRYTTSHP 270
               +   +   EI L  Q     +    D +  T       +++   G + + ++ +  
Sbjct: 229 ----RSPQHVAAEIRLAKQYFPQVKEFFFDDDTFTDDLPRAEAIARELGKLGVTWSCNAK 284

Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330
            ++    +K   D    +  L +  +SG+ +IL ++ +       R+       +   I 
Sbjct: 285 ANVPRETLKVLRD--NGLRLLLVGYESGNQQILHNIKKGMRVEVAREFTKNCHEL--GIK 340

Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
           I   FI+G PGET +  + T+    +I          +P  GT    
Sbjct: 341 IHGTFILGLPGETKETIQETIRFAQEINPHTLQVSLAAPYPGTALHK 387


>gi|89897593|ref|YP_521080.1| hypothetical protein DSY4847 [Desulfitobacterium hafniense Y51]
 gi|89337041|dbj|BAE86636.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 581

 Score = 92.3 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 55/339 (16%), Positives = 106/339 (31%), Gaps = 45/339 (13%)

Query: 42  LRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDL 101
            R+E   +            AD+I   +C+I     ++  + + R+R +           
Sbjct: 45  ERIEAELYEA---------KADVIGF-SCYIWN--LKETLAVIRRLRPV-------SPHT 85

Query: 102 LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG--------------- 146
            +VV G     EGE  LR +P ++ VV  +      ELL     G               
Sbjct: 86  RIVVGGPEVSFEGEAFLRENPEIDGVVLGEGEITFLELLRAWESGASLSQVQGLAWRASS 145

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           + ++      +     L          +G  A++    GC   C +C+    +G      
Sbjct: 146 REIILNPPRRQLAMAELPNPYNHEEELKGRLAYVETTRGCPFNCQYCLSSTFQG-VRYLP 204

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
             +     R+ +  G   I L+ +  N  +   L              ++      +R  
Sbjct: 205 PERFRQIMRQTLRYGARTIKLVDRTFNVNKEHAL----RILDIAREEAAQYPPEAGIRVH 260

Query: 267 TSHPRD-MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS- 324
                + + +  +    D    +    + VQS     L +++R      + +    IR  
Sbjct: 261 CEMAGELLDEEWLLYLQDYPKDLVQFEIGVQSTHPETLAAIHRP---QHFERWARYIREM 317

Query: 325 -VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
                  +  D I G P E  + FR + + V  +     
Sbjct: 318 QRLNKAHLHLDLIAGLPKEGWESFRRSFNEVYAVQPDML 356


>gi|73748031|ref|YP_307270.1| radical SAM/B12 binding domain-containing protein [Dehalococcoides
           sp. CBDB1]
 gi|73659747|emb|CAI82354.1| radical SAM/B12 binding domain protein [Dehalococcoides sp. CBDB1]
          Length = 494

 Score = 92.3 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 49/267 (18%), Positives = 99/267 (37%), Gaps = 23/267 (8%)

Query: 129 GPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAF-LTIQEGCD 187
           G + Y  +  L  +   G+ +++         + L                 L    GC 
Sbjct: 135 GEENYAEIQGLAWKDTEGRVIINQPRPFIHNLDELPNPAWHLIDVPKYWDITLNTSRGCP 194

Query: 188 KFCTFC-VVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKC 245
             C+FC  +P+ +G     S+ +++ +   L  N  V  I     N            + 
Sbjct: 195 FKCSFCYNIPFHQGHRADLSVERIIAQIEHLQKNYKVKFIRFFEDNFTF--------NRK 246

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
              +   ++  I   +++++ T    DMS+  +            + + V++GS R+L+ 
Sbjct: 247 RMREFCQTV--IDRRIKIKWDTESRADMSEEDVALMAKAG--CTSVGIGVETGSKRMLEY 302

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           +N+     E  +     R V+  I      ++  P ET +DF  T D++ ++        
Sbjct: 303 LNKGVDLDEMGRTF--WRFVKHGIMPRLYIMLAVPTETVEDFTETQDMLHRMEDPPFMYM 360

Query: 366 KYSPRLGTPGSNMLEQVDENVKAERLL 392
           ++ P  GTP   +  Q+   VK  R+ 
Sbjct: 361 RFVPYPGTP---LYNQL---VKDNRIK 381


>gi|258541492|ref|YP_003186925.1| iron-sulfur (Fe-S) oxidoreductase [Acetobacter pasteurianus IFO
           3283-01]
 gi|256632570|dbj|BAH98545.1| iron-sulfur (Fe-S) oxidoreductase [Acetobacter pasteurianus IFO
           3283-01]
 gi|256635627|dbj|BAI01596.1| iron-sulfur (Fe-S) oxidoreductase [Acetobacter pasteurianus IFO
           3283-03]
 gi|256638682|dbj|BAI04644.1| iron-sulfur (Fe-S) oxidoreductase [Acetobacter pasteurianus IFO
           3283-07]
 gi|256641736|dbj|BAI07691.1| iron-sulfur (Fe-S) oxidoreductase [Acetobacter pasteurianus IFO
           3283-22]
 gi|256644791|dbj|BAI10739.1| iron-sulfur (Fe-S) oxidoreductase [Acetobacter pasteurianus IFO
           3283-26]
 gi|256647846|dbj|BAI13787.1| iron-sulfur (Fe-S) oxidoreductase [Acetobacter pasteurianus IFO
           3283-32]
 gi|256650899|dbj|BAI16833.1| iron-sulfur (Fe-S) oxidoreductase [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256653890|dbj|BAI19817.1| iron-sulfur (Fe-S) oxidoreductase [Acetobacter pasteurianus IFO
           3283-12]
          Length = 476

 Score = 92.3 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 60/347 (17%), Positives = 124/347 (35%), Gaps = 47/347 (13%)

Query: 55  RVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG 114
            +  + + DL++L+T      +  K       ++++         +L + + G     + 
Sbjct: 64  ILEDVKNRDLVILHTST---PSFAKDVEVAQMLKDV-------NPNLKIGMVGAKVAVQP 113

Query: 115 EEILRRSPIVNVVVGPQTYYRLPELLE------------RARFGKRVVDTDYSVEDKFER 162
           EE L +   ++ V   +  Y + E+ E            R + G+ + + D ++ +  + 
Sbjct: 114 EESLLKGAPIDFVARNEFDYTIKEIAEGRDFKDVDGITWRNKDGEIITNRDRAMIEDMDS 173

Query: 163 LSIVDGGYNRKRGVTAFLT-----------IQEGCDKFCTFCVVPYTRGIEISRSLSQVV 211
           L  V   Y R   +  +                GC   CTFC+ P T G    R+     
Sbjct: 174 LPFVTEVYKRDLRIEDYFIGYLMHPYISIYTGRGCKSRCTFCLWPQTVGGHRYRT----- 228

Query: 212 DEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLL-YSLSEIKGLVRLRYTTSHP 270
               +   +   EI L  Q     +    D +  T       +++   G + + ++ +  
Sbjct: 229 ----RSPQHVAAEIRLAKQYFPQVKEFFFDDDTFTDDLPRAEAIARELGKLGVTWSCNAK 284

Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330
            ++    +K   D    +  L +  +SG+ +IL ++ +       R+       +   I 
Sbjct: 285 ANVPRETLKVLRD--NGLRLLLVGYESGNQQILHNIKKGMRVEVAREFTKNCHEL--GIK 340

Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
           I   FI+G PGET +  + T+    +I          +P  GT    
Sbjct: 341 IHGTFILGLPGETKETIQETIRFAQEINPHTLQVSLAAPYPGTALHK 387


>gi|294676226|ref|YP_003576841.1| magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative
           cyclase [Rhodobacter capsulatus SB 1003]
 gi|114858|sp|P26168|BCHE_RHOCA RecName: Full=Anaerobic magnesium-protoporphyrin IX monomethyl
           ester [oxidative] cyclase; Short=Anaerobic
           Mg-protoporphyrin IX monomethyl ester oxidative cyclase
 gi|46113|emb|CAA77530.1| 575 aa (66 kD) oxidative cyclase subunit [Rhodobacter capsulatus]
 gi|294475046|gb|ADE84434.1| magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative
           cyclase [Rhodobacter capsulatus SB 1003]
          Length = 575

 Score = 92.3 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 64/382 (16%), Positives = 128/382 (33%), Gaps = 56/382 (14%)

Query: 43  RMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG--------------RIR 88
            +       G++ ++ +D        T ++      K ++ L                  
Sbjct: 28  YLAGHLKKAGFDDIHFIDA------MTLNVSHDELRKKFAELQPDLIGVTSITPSIYEAE 81

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK- 147
                  +   + + V+ G  A     ++L  +P V+ +V  +    + EL +    G+ 
Sbjct: 82  ETLKIAKEVVPNAVRVLGGVHATFMFRQVLSEAPWVDAIVRGEGEEIMVELAKCVSEGRW 141

Query: 148 ---------------------RVVDTDYSVEDKFERLSIVDGGYNRKRGV---TAFLTIQ 183
                                +   T   ++      S++D  +     +    A   + 
Sbjct: 142 PEDRASIKGLAFHDGTEIVATQAAPTVKDIDSLKPDWSLIDWKHYIYIPLGVRVAIPNMA 201

Query: 184 EGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDG 242
            GC   C+FC           RS   VVDE   L++N  V    L  +     + K ++ 
Sbjct: 202 RGCPFTCSFCSQWKFWRDYRVRSPKAVVDEIEDLVNNYDVGFFILADEEPTINKKKFVEF 261

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
            +      L    ++K  +  R T  +       L+K + +  ++  ++ L  ++ +   
Sbjct: 262 CQEMIDRGLN--HKVKWGINTRVTDIYR---DRDLLKFYREAGLV--HISLGTEAAAQLK 314

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           L   N+  T  E ++ I  +R    DI   + FIVG   ET +    T  +        A
Sbjct: 315 LDLFNKETTVAENKEAIRLLREA--DIFTEAQFIVGLDNETKETLEETFQMAWDWQPDLA 372

Query: 363 FSFKYSPRLGTPGS-NMLEQVD 383
               Y+P   TP    + +QV+
Sbjct: 373 NWSMYTPWPFTPLFQELRDQVE 394


>gi|213023346|ref|ZP_03337793.1| hypothetical protein Salmonelentericaenterica_12575 [Salmonella
           enterica subsp. enterica serovar Typhi str. 404ty]
          Length = 103

 Score = 92.3 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 9/90 (10%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC  N+ DS R+     ++GY+ V   DDAD++++NTC   + A ++    +G
Sbjct: 9   KIGFVSLGCPKNLVDSERILTELRTEGYDVVPHYDDADMVIVNTCGFIDSAVQESLEAIG 68

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGE 115
                         +  V+V GC+ +   +
Sbjct: 69  EA---------LNENGKVIVTGCLGKRRSD 89


>gi|322418301|ref|YP_004197524.1| hopanoid biosynthesis associated radical SAM protein HpnJ
           [Geobacter sp. M18]
 gi|320124688|gb|ADW12248.1| hopanoid biosynthesis associated radical SAM protein HpnJ
           [Geobacter sp. M18]
          Length = 473

 Score = 91.9 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 53/305 (17%), Positives = 105/305 (34%), Gaps = 43/305 (14%)

Query: 104 VVAGCVAQAEGEE-ILRRSPIVNVVVGPQTYYRLPELLERA-----------RFGKRVVD 151
           V+ G       EE +      V++V   +  Y   EL E             + GK    
Sbjct: 101 VLTGPHVSILPEESLRFADGAVDIVCRGEFDYSTKELCEGKPWEEVDGISFFKDGKVFHT 160

Query: 152 TDYSVEDKFERLSIVDGGYNRKRGVTAFLTI-----------QEGCDKFCTFCVVPY-TR 199
            D       + L      Y R   +  ++               GC   C +C+ P    
Sbjct: 161 KDRPPISDLDALPFASQVYKRDLPIEEYVIPHFRHPYLSIYASRGCPSRCIYCLWPQTFS 220

Query: 200 GI-EISRSLSQVVDEARKLIDN--GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256
           G     RS   V +E R + +N   V +I+       A +   +            +++ 
Sbjct: 221 GRTLRKRSPQNVYEEVRWIKENLPQVKDISFDDDTFTADKQHAI------------AIAR 268

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           +   + + +  +   +     +K   D    M ++ +  +SG+++ILK++ +  T  +  
Sbjct: 269 LIKPLNVSWVINARANADYETLKELRDAG--MHHVVVGYESGNEQILKNIKKGVTKTQAI 326

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
           +     + +   I +   F++G PGET +  + T+     +          SP  GT   
Sbjct: 327 EFTRNCKKL--GITVHGAFVLGLPGETRETIKETIAYAIDLDLTSIQVSLASPYPGTEFY 384

Query: 377 NMLEQ 381
            M ++
Sbjct: 385 QMAKE 389


>gi|224418854|ref|ZP_03656860.1| 2-methylthioadenine synthetase [Helicobacter canadensis MIT
           98-5491]
 gi|313142372|ref|ZP_07804565.1| conserved hypothetical protein [Helicobacter canadensis MIT
           98-5491]
 gi|313131403|gb|EFR49020.1| conserved hypothetical protein [Helicobacter canadensis MIT
           98-5491]
          Length = 163

 Score = 91.9 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 39/163 (23%), Positives = 70/163 (42%), Gaps = 13/163 (7%)

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
            ++++ +R   P+  + + FI+G PGE +++F     L++   + +   F YS   GT  
Sbjct: 1   MELLEMMRKA-PNSFVRTSFILGHPGEGEEEFEELCQLIENFSFDRINFFAYSKEEGTKS 59

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GR--- 431
           + M EQ+       RL  + K    Q         G  +  LIE   KE      GR   
Sbjct: 60  ATM-EQIPSKTIHSRLKKINKIFTSQYQQNLKKLKGAEVTALIEGKSKEHEFFYAGRELR 118

Query: 432 -SPWLQSVVLNSK---NHNI--GDIIKVRITDVKISTLYGELV 468
            +P +   +L +    +  I  G   KV+IT++    + G ++
Sbjct: 119 FAPEIDGEILINDKTIDEEITSG-YYKVKITEIAGEDILGCVI 160


>gi|110679000|ref|YP_682007.1| magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative
           cyclase [Roseobacter denitrificans OCh 114]
 gi|109455116|gb|ABG31321.1| magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative
           cyclase [Roseobacter denitrificans OCh 114]
          Length = 554

 Score = 91.9 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 64/387 (16%), Positives = 123/387 (31%), Gaps = 66/387 (17%)

Query: 43  RMEDMFFSQGYE-------RVNSMDDADL----------IVLNTCHIREKAAEKVYSFLG 85
            +       G++         +++ DADL          +V  T  I           + 
Sbjct: 28  YLSGHLRGVGFDDIEFIDAMTDNLTDADLAQKMEALQPDVVAVT-AITPS--------IY 78

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R  ++     +   + + V+ G  A    +++L  +P ++V+V  +      EL+   + 
Sbjct: 79  RAEDVLKIAKELVPNAVRVMGGVHATFMYKQVLSEAPWIDVIVRGEGEEICSELMLAIQD 138

Query: 146 GK-------------------------RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFL 180
           G                            V     ++  +  L      Y       A  
Sbjct: 139 GSFPGNRHDIKGLAFLDGDQIIATPAASTVKDLSKIKPDWTVLDWSKYIYIPLGTRVAIP 198

Query: 181 TIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL 240
            +  GC   C+FC           R    VVDE   L+DN      +L     +      
Sbjct: 199 NLARGCPFTCSFCSQWKFWRDYRVRDPKDVVDEIEDLVDNHGVGFFILADEEPSI----- 253

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTT---SHPRDMSDCLIKAHGDLDVLMPYLHLPVQS 297
              K  F      L +     R+++              L+K + +  ++  ++ L  ++
Sbjct: 254 --NKKKFIAFCQELIDRGLPDRVKWGINTRVTDIYRDRDLLKFYREAGLV--HVSLGTEA 309

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
            +   L   N+     E ++ I  +R    DI + + FIVG   ET +    T  +    
Sbjct: 310 AAQMKLDIFNKETKVEENKEAIRLLREA--DILVEAQFIVGLDNETSETLEETFQMAWDW 367

Query: 358 GYAQAFSFKYSPRLGTPGS-NMLEQVD 383
               A    Y+P   TP    + ++V+
Sbjct: 368 QPDLANWSMYTPWPFTPLFQELKDKVE 394


>gi|254245866|ref|ZP_04939187.1| Radical SAM family protein [Burkholderia cenocepacia PC184]
 gi|124870642|gb|EAY62358.1| Radical SAM family protein [Burkholderia cenocepacia PC184]
          Length = 480

 Score = 91.9 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 64/346 (18%), Positives = 123/346 (35%), Gaps = 51/346 (14%)

Query: 54  ERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAE 113
           E +   +D DL++++T              L +++            +LV + G     +
Sbjct: 68  ETLKIANDYDLVIIHTSTPSFPTDAMFAQDLKKMK----------PSMLVGMVGAKVMVD 117

Query: 114 GEEILRRSPIVNVVVGPQTYYRLPELLE------------RARFGKRVVDTDYSVEDKFE 161
               L  S  ++ V   +  Y   EL E            RA+ G    +    + +  +
Sbjct: 118 PHNSLTASEAIDFVCREEFDYTCKELAEGKPFPEIKGLSWRAKDGSIEHNEARPILENMD 177

Query: 162 RLSIVDGGYNRKRGV---------TAFLTI--QEGCDKFCTFCVVPYTRG--IEISRSLS 208
            L  V   Y R   +           +++I    GC   CTFC+ P T       +RS+ 
Sbjct: 178 ELPFVAPVYKRDLKIDNYFIGYLNYPYVSIYTGRGCKSRCTFCLWPQTVSGHRYRTRSVE 237

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK-GLVRLRYTT 267
            V+ EA+            +  N+   +    D +  T          I  G + + ++ 
Sbjct: 238 NVLAEAK-----------WIRDNMPEVKELMFDDDTFTDDLPRAEAIAIGLGKLGITWSC 286

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
           +   ++    +K   +    +  L +  +SG D+IL ++ +       R+     + +  
Sbjct: 287 NAKANVPYKSLKIMKE--NGLRLLLVGFESGDDQILVNIKKGVRTDFARRFSADCKKL-- 342

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
            I I   FI+G PGET +  + T++   +I          +P  GT
Sbjct: 343 GIKIHGTFILGLPGETQETIKKTIEYAKEINPHTIQVSLAAPYPGT 388


>gi|222054759|ref|YP_002537121.1| radical SAM protein [Geobacter sp. FRC-32]
 gi|221564048|gb|ACM20020.1| Radical SAM domain protein [Geobacter sp. FRC-32]
          Length = 450

 Score = 91.9 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 75/418 (17%), Positives = 135/418 (32%), Gaps = 82/418 (19%)

Query: 40  DSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGG 99
           DS ++     + G + V        I   T  + E         L   R  K    K   
Sbjct: 68  DSDKLAAQIAAAGPDIVG-------ITAMTPTVPEA--------LHAARISK----KIAP 108

Query: 100 DLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTD------ 153
              VV+ G     +   +L   P V+ V+  +       L E    G    D D      
Sbjct: 109 IAKVVLGGVHPTLDPAGVLA-DPHVDFVIRGEGEEAFAALAEALANGSSPYDIDGISYCQ 167

Query: 154 --------------------YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC 193
                                   + F     ++     +      + +  GC   CTFC
Sbjct: 168 DGEVVIKDKARAIADLNTLPMPDYEAFPVERYIEHNRYLRSVRGISMIVSRGCPFQCTFC 227

Query: 194 VVPYTRGIE-ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLY 252
            V  T G     +S  +VVDE   L ++   E      ++        +  +    +   
Sbjct: 228 AVHQTMGRNWRIKSPQRVVDELVALKEHHQLEGVWFKDSI-------FNLNREWIKEFCR 280

Query: 253 SLSEIKGLVRLRYTTSHPRD-MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
            +  I+  V + +      D + +  ++        +  L L +++GS + L  + +  T
Sbjct: 281 LM--IEQKVEIAWQALTRIDLIDEEELQLMKRAG--LTQLDLGIETGSPKNLVRLKKGIT 336

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
                +I +R+R  +  + +   F++G PGE + D + T +L   +   +     YSP  
Sbjct: 337 VE---KINERVRLAKQYVKVFGFFMIGIPGEDETDVQQTFNLAKDLDLDRWTWSIYSPLP 393

Query: 372 GTPGSNMLEQVDENVKAE--RLLCLQ---------------KKLREQQVSFNDACVGQ 412
           G   S + E++    K E  RL   Q                +L+E     N    G+
Sbjct: 394 G---STLYEELIAEGKIEPYRLDYHQVHFTEAYAGICAIPPARLKELYQEINGYFYGR 448


>gi|257125082|ref|YP_003163196.1| radical SAM protein [Leptotrichia buccalis C-1013-b]
 gi|257049021|gb|ACV38205.1| Radical SAM domain protein [Leptotrichia buccalis C-1013-b]
          Length = 444

 Score = 91.9 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 55/327 (16%), Positives = 119/327 (36%), Gaps = 45/327 (13%)

Query: 54  ERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAE 113
           E +N  +  DL+V+    +    A++ Y    + +            + V+  G     E
Sbjct: 51  EFINYEESTDLVVI---SVETYTAKRAYEIAKKFQK---------RGIKVLAGGYHPTVE 98

Query: 114 GEEILRRSPIVNVVVGPQT--YYRLPELLERARFGKRV--VDTDYSVEDKFERLSIVDGG 169
            +E L      ++++G     + ++   L + +  KR   V T +++ D+          
Sbjct: 99  PDECLEHFD--SIILGNAESVWTKMLNDLSKNKLEKRYYGVTTSFAMPDR-------SIY 149

Query: 170 YNRKRGVTAFLTIQEGCDKFCTFCVV-PYTRGIEISRSLSQVVDEARKLIDNGVCEITLL 228
            ++K    A +    GC+  C FC +  Y       R + ++V + +   ++G   +  +
Sbjct: 150 KDKKYSPLALIETGRGCNFACDFCAIHSYYEKKYFRRPIEEIVQDIK---NSGKKYVFFI 206

Query: 229 GQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLM 288
             N  A     ++  K      +  +++           +     +D L+          
Sbjct: 207 DDNFVADHKHAIEICKAITPLNIKWVTQ----------GAITIAKNDELLYWMKKSG--C 254

Query: 289 PYLHLPVQSGSDRILKSMNRRHT--AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDD 346
             + +  +S +  ILK M +       E  ++ ++I S    I I + F+ G+  +T + 
Sbjct: 255 KMILIGYESMNPNILKDMGKGWRSGVGEINELTEKIHSY--GIGIYATFVFGYGNDTKET 312

Query: 347 FRATMDLVDKIGYAQAFSFKYSPRLGT 373
           F  T+    K G+  A      P   T
Sbjct: 313 FDETVKFAKKHGFYFAAFNHLVPFPKT 339


>gi|163734082|ref|ZP_02141523.1| magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative
           cyclase [Roseobacter litoralis Och 149]
 gi|161392618|gb|EDQ16946.1| magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative
           cyclase [Roseobacter litoralis Och 149]
          Length = 554

 Score = 91.9 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 64/387 (16%), Positives = 126/387 (32%), Gaps = 66/387 (17%)

Query: 43  RMEDMFFSQGYE-------RVNSMDDADL----------IVLNTCHIREKAAEKVYSFLG 85
            +       G++         +++ DADL          +V  T  I           + 
Sbjct: 28  YLSGHLRGVGFDDIEFIDAMTDNLTDADLAQKMEALQPDVVAVT-AITPS--------IY 78

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR- 144
           R  ++     +   + + V+ G  A    +++L  +P ++V+V  +      EL+   + 
Sbjct: 79  RAEDVLKIAKELVPNAVRVMGGVHATFMYKQVLSEAPWIDVIVRGEGEEICSELMLAIQD 138

Query: 145 ----------------FGKRVVDTD--------YSVEDKFERLSIVDGGYNRKRGVTAFL 180
                            G +++ T           ++  +  L      Y       A  
Sbjct: 139 GSFPGNRHDIKGLAFLHGDQIIATPAASTVKDLSKIKPDWTVLDWSKYIYIPLGTRVAIP 198

Query: 181 TIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL 240
            +  GC   C+FC           R    VVDE   L+DN      +L     +      
Sbjct: 199 NLARGCPFTCSFCSQWKFWRDYRVRDPKDVVDEIEDLVDNHGVGFFILADEEPSI----- 253

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTT---SHPRDMSDCLIKAHGDLDVLMPYLHLPVQS 297
              K  F      L +     R+++              L+K + +  ++  ++ L  ++
Sbjct: 254 --NKKKFIAFCQELIDRGLPDRVKWGINTRVTDIYRDRDLLKFYREAGLV--HVSLGTEA 309

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
            +   L   N+     E ++ I  +R    DI + + FIVG   ET +    T  +    
Sbjct: 310 AAQMKLDIFNKETKVDENKEAIRLLREA--DILVEAQFIVGLDNETPETLEETFQMAWDW 367

Query: 358 GYAQAFSFKYSPRLGTPGS-NMLEQVD 383
               A    Y+P   TP    + ++V+
Sbjct: 368 QPDLANWSMYTPWPFTPLFQELKDKVE 394


>gi|330991809|ref|ZP_08315758.1| Putative methyltransferase [Gluconacetobacter sp. SXCC-1]
 gi|329760830|gb|EGG77325.1| Putative methyltransferase [Gluconacetobacter sp. SXCC-1]
          Length = 474

 Score = 91.9 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 63/352 (17%), Positives = 123/352 (34%), Gaps = 52/352 (14%)

Query: 49  FSQGYERV-NSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAG 107
              G E +   + + DL++++T      +  +V   +                + + + G
Sbjct: 56  ARMGMEPILEDVRNRDLVIMHTSTPSFASDVRVAQMIKDA----------NPKVKIGMVG 105

Query: 108 CVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE------------RARFGKRVVDTDYS 155
                + EE L  +P V+ V   +  + + E+ E            R   GK V + D +
Sbjct: 106 AKVAVQPEESLLNAPPVDFVARNEFDFTIKEMAEGRDWKDVDGISWRDGDGKIVHNRDRA 165

Query: 156 VEDKFERLSIVDGGYNRKRGVTAFLT-----------IQEGCDKFCTFCVVPYTRG--IE 202
           + +  + L  V   Y R   +  +                GC   CTFC+ P T G    
Sbjct: 166 MIEDMDSLPFVTEVYKRDLKIEDYFIGYLMHPYISIYTGRGCKSRCTFCLWPQTVGGHHY 225

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLL-YSLSEIKGLV 261
            +RS   V  E R           L  Q     +    D +  T       ++++  G +
Sbjct: 226 RTRSPEHVAAEIR-----------LAKQYFPQVKEFFFDDDTFTDDLPRAEAIAKELGKL 274

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
            + ++ +   ++    ++        +  L +  +SG+ +IL ++ +       R+    
Sbjct: 275 GVTWSCNAKANVPRKTLEVLKA--NGLRLLLVGYESGNQQILHNIKKGMRVETAREFTKN 332

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
              +   I I   FI+G PGET +  + T+    +I          +P  GT
Sbjct: 333 CHEL--GIKIHGTFILGLPGETKETIQETIRFATEINPHTLQVSLAAPYPGT 382


>gi|302342467|ref|YP_003806996.1| radical SAM domain protein [Desulfarculus baarsii DSM 2075]
 gi|301639080|gb|ADK84402.1| Radical SAM domain protein [Desulfarculus baarsii DSM 2075]
          Length = 556

 Score = 91.9 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 56/253 (22%), Positives = 91/253 (35%), Gaps = 14/253 (5%)

Query: 126 VVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEG 185
           V+             E  R     V  D+  +D    L  V      +    A +T   G
Sbjct: 168 VLTRNARRNFWKGFAEAGRLSWEQVRFDHYFKDSRNVLHRVREAGELR---IAAITASRG 224

Query: 186 CDKFCTFCVVPYT-RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK 244
           C   C FC      RG    R ++ V+DE R L+D         G N   +  + +   +
Sbjct: 225 CPYHCAFCSSQNMWRGHWRRRRVALVIDEIRFLMDRH-------GVNTIVFNDENISVNR 277

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304
             F +LL  L+++          S        ++         +   +L  +S SDR L+
Sbjct: 278 AWFLELLGELAKLGVTWISGGGLSVRSLDDPRVVDEM--YRSGVGLFNLAFESTSDRTLR 335

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
            + +  T  E  ++I+ +R  R D  ++  FI GFP ET  D R  +D    +       
Sbjct: 336 RIGKALTTEESARVIELVRQ-RGDGYVTGFFISGFPFETMADVRDNLDRAGALDIDWKCY 394

Query: 365 FKYSPRLGTPGSN 377
           + + P  G P   
Sbjct: 395 YCFQPFPGAPLYE 407


>gi|73619526|sp|Q7X2C7|BCHE_RHOGE RecName: Full=Anaerobic magnesium-protoporphyrin IX monomethyl
           ester [oxidative] cyclase; Short=Anaerobic
           Mg-protoporphyrin IX monomethyl ester oxidative cyclase
 gi|32187101|gb|AAP73428.1| anaerobic Mg-protoporphyrin IX monomethyl ester cyclase [Rubrivivax
           gelatinosus]
          Length = 555

 Score = 91.9 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 59/374 (15%), Positives = 113/374 (30%), Gaps = 66/374 (17%)

Query: 43  RMEDMFFSQGYE-------RVNSMDD-----------ADLIVLNTCHIREKAAEKVYSFL 84
            +     + GY          N + +            D++    C     A  K    L
Sbjct: 28  YLAGYLKAGGYTDVIFVDAMTNDLSEDQVREKITTLKPDIV---GCTAITPAIYKAERTL 84

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVV---GPQTYYRLPELLE 141
              + +         D++ V+ G        ++L+ +P ++ +V   G Q    L   ++
Sbjct: 85  QIAKEV-------NPDIVTVLGGIHGTFMYPQVLKEAPWIDAIVRGEGEQVMLNLVTAVD 137

Query: 142 RARF----------------GKRVVDTDYSVEDKFERLSIVDGG-------YNRKRGVTA 178
           + RF                GK V        +  +R++   G        Y       A
Sbjct: 138 QGRFMADRNCVNGIAYAAPDGKVVATPAEPPIEDLDRITPDWGILEWEKYIYIPMNKRVA 197

Query: 179 FLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK 238
                 GC   C+FC           R   +VVDE   L+        +L          
Sbjct: 198 IPNFARGCPFTCSFCSQWKFWRDYRIRDPKKVVDEIEVLVKQHDVGFFILADEEPTIH-- 255

Query: 239 GLDGEKCTFSDLLYSLSEIK-GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQS 297
                +  F +    L +   G++    T        + L+       ++  ++ L  ++
Sbjct: 256 -----RKKFIEFCEELIKRDLGVLWGINTRVTDILRDEKLLPLFRKAGLI--HVSLGTEA 308

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
            +   L  +N+  T  + ++ I  ++     I   + FIVG   ET +    T  +    
Sbjct: 309 AAQLKLDMVNKETTIEQNKRAIQLLKDN--GIVTEAQFIVGLENETAETLEETYKMARDW 366

Query: 358 GYAQAFSFKYSPRL 371
               A    Y+P  
Sbjct: 367 NPDMANWAMYTPWP 380


>gi|161525303|ref|YP_001580315.1| hopanoid biosynthesis associated radical SAM protein HpnJ
           [Burkholderia multivorans ATCC 17616]
 gi|189349959|ref|YP_001945587.1| magnesium-protoporphyrin IX monomethyl ester oxidative cyclase
           [Burkholderia multivorans ATCC 17616]
 gi|160342732|gb|ABX15818.1| hopanoid biosynthesis associated radical SAM protein HpnJ
           [Burkholderia multivorans ATCC 17616]
 gi|189333981|dbj|BAG43051.1| magnesium-protoporphyrin IX monomethyl ester oxidative cyclase
           [Burkholderia multivorans ATCC 17616]
          Length = 473

 Score = 91.9 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 64/346 (18%), Positives = 122/346 (35%), Gaps = 51/346 (14%)

Query: 54  ERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAE 113
           E +   +D DL++++T              L +++            +LV + G     +
Sbjct: 61  ETLKIANDYDLVIIHTSTPSFPTDAMFAQDLKKMK----------PSMLVGMVGAKVMVD 110

Query: 114 GEEILRRSPIVNVVVGPQTYYRLPELLE------------RARFGKRVVDTDYSVEDKFE 161
               L  S  ++ V   +  Y   EL E            RA+ G    +    + +  +
Sbjct: 111 PHNSLTASDAIDFVCREEFDYTCKELAEGKPFAEIKGLSWRAKDGSIEHNEARPILENMD 170

Query: 162 RLSIVDGGYNRKRGV---------TAFLTI--QEGCDKFCTFCVVPYTRG--IEISRSLS 208
            L  V   Y R   +           +++I    GC   CTFC+ P T       +RS+ 
Sbjct: 171 ELPFVAPVYKRDLKIENYFIGYLNYPYVSIYTGRGCKSRCTFCLWPQTVSGHRYRTRSVE 230

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK-GLVRLRYTT 267
            V+ EA+            +  N+   +    D +  T          I  G + + ++ 
Sbjct: 231 NVLAEAK-----------WIRDNMPEVKELMFDDDTFTDDLPRAEAIAIGLGKLGITWSC 279

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
           +   ++    +K   +    +  L +  +SG D+IL ++ +       R+     + +  
Sbjct: 280 NAKANVPYKTLKVMKE--NGLRLLLVGFESGDDQILVNIKKGVRTDFARRFSADCKKL-- 335

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
            I I   FI+G PGET +  + T+    +I          +P  GT
Sbjct: 336 GIKIHGTFILGLPGETKETIKKTIQYAKEINPHTIQVSLAAPYPGT 381


>gi|253701133|ref|YP_003022322.1| radical SAM protein [Geobacter sp. M21]
 gi|251775983|gb|ACT18564.1| Radical SAM domain protein [Geobacter sp. M21]
          Length = 424

 Score = 91.9 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 72/224 (32%), Gaps = 21/224 (9%)

Query: 159 KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG-IEISRSLSQVVDEARKL 217
            F   S+      R   +   L  + GC   C++C  P   G       +  V++     
Sbjct: 172 PFPDPSLWSVPAGRADELWIPLQTRRGCPMKCSYCSTPALEGTAIRMHPVETVLEALASH 231

Query: 218 IDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCL 277
           +  G      +    N       D  K     +  +     G+           D     
Sbjct: 232 VAAGFQNFYFVDNTFNFP----PDYAKRLCDAIFSANL---GIRWRCILYPGFVDEEMVT 284

Query: 278 IKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIV 337
             A          + L  +SGS  ILKS+N+++   + R+  + +R  R  IA     + 
Sbjct: 285 KMARAG----CVEVSLGFESGSPLILKSLNKKYDLDQVREASELLR--RHGIARMGFLMF 338

Query: 338 GFPGETDDDFRATMDLVDKIGYA----QAFSFKYSPRLGTPGSN 377
           G PGET +  + ++D  D +             Y     TP + 
Sbjct: 339 GAPGETRETVQESLDFADSLQLDMLKLSTGIRIY---PDTPLAE 379


>gi|15922732|ref|NP_378401.1| hypothetical protein ST2401 [Sulfolobus tokodaii str. 7]
 gi|15623522|dbj|BAB67510.1| 529aa long conserved hypothetical protein [Sulfolobus tokodaii str.
           7]
          Length = 529

 Score = 91.9 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 61/317 (19%), Positives = 119/317 (37%), Gaps = 40/317 (12%)

Query: 79  KVYSFLGR-IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPI-VNVVVGPQTYYRL 136
           K +  LG  ++ LK        +  V+V G  A     E+L + P  ++ V   +    L
Sbjct: 127 KFFEELGEEVKKLKAKY-----NFKVIVGGPGAW----ELLNKKPEWIDTVFIGEAELTL 177

Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC-VV 195
           PE++++   G+ V       + K +++  +             + I  GC + C FC + 
Sbjct: 178 PEVVKKLMDGEEVPTIVRGKDPKVDQIPPIVNPARLGE-----VQITRGCPRGCQFCSIT 232

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
           P T     S  L  +  E    +  G   +  +  +V  +  + L         L   + 
Sbjct: 233 PET---FRSMPLDVIKKEVEVNMKGGWNRVEFITDDVMLYGSQKLRTNHDAIVRLFTEVM 289

Query: 256 E--IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLH-------LPVQSGSDRILKSM 306
              + G+     +    ++ S   +KA  +   +  Y         + +++GS +I++  
Sbjct: 290 NMGVDGIWWPHISAPAVKE-SPKTVKAMAE---IARYSFDRAVAPVVGLETGSVKIMEKY 345

Query: 307 NR----RHTAYEYRQIIDRIRSVRPD--IAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
            R      T  ++  +I    ++  D  I       +G+P ETD+D + ++DLV KI   
Sbjct: 346 MRAKAFPWTPKDWADVIIDATAIMNDNYIFPCYTMTIGYPEETDEDVQQSVDLVQKI-ID 404

Query: 361 QAFSFKYSPRLGTPGSN 377
             F     P    P + 
Sbjct: 405 HGFIAWVFPLPVIPMAT 421


>gi|94265914|ref|ZP_01289641.1| Cobalamin B12-binding:Radical SAM [delta proteobacterium MLMS-1]
 gi|93453538|gb|EAT03943.1| Cobalamin B12-binding:Radical SAM [delta proteobacterium MLMS-1]
          Length = 475

 Score = 91.9 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 66/374 (17%), Positives = 115/374 (30%), Gaps = 64/374 (17%)

Query: 33  GCQMNVYDS-------LRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           GC+  + D         R+ +                D I L TC             + 
Sbjct: 45  GCRTAIVDCFAHLDSDARIMEYLEEH---------PPDWIGL-TCT-----TNGFLDAVR 89

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +R  K +R     ++  V+ G    A  E+IL + P V+  V  +    L +LL+ A F
Sbjct: 90  IVRMAKEAR----PEIRAVLGGVHVSALKEKILLQYPEVDCAVVGEGELPLAQLLQGAPF 145

Query: 146 G-------------------KRVVDTDYSVEDKFERLSIVDGGY-----NRKRGVTAFLT 181
                                R V+ D      +E+L      Y     N      A   
Sbjct: 146 ESIRGLVFRDDSGVRFSGLQDRGVELDDLPFPAYEKLRGYPEAYQLPIFNYPSHPNASCL 205

Query: 182 IQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARK-LIDNGVCEITLLGQNVNAWRGKGL 240
              GC   C++C     R      S + V    +      G+  +          RG+  
Sbjct: 206 SSRGCPYACSYCDRSVFRRSFKYNSAAYVYRHMQYLRQRWGIRHLNFYDDQFTFHRGR-- 263

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300
                   +L   L E + L            +   L+            + L +++G  
Sbjct: 264 ------VVELCRRLIE-EPLDMTFNCAIRAEHVDPELLALMKRAG--CWMISLGIETGDP 314

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
            +L    +        ++I  I      I +    ++G PGE+++  R +M  V  +   
Sbjct: 315 DLLAQHRQNADLDLLARVIHDIHRA--GIRVKGLLMLGLPGESEESVRRSMRYVFSLPID 372

Query: 361 QAFSFKYSPRLGTP 374
                K++P  G+P
Sbjct: 373 DFNLAKFTPFPGSP 386


>gi|332159332|ref|YP_004424611.1| methyltransferase [Pyrococcus sp. NA2]
 gi|331034795|gb|AEC52607.1| methyltransferase [Pyrococcus sp. NA2]
          Length = 465

 Score = 91.9 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 55/305 (18%), Positives = 102/305 (33%), Gaps = 41/305 (13%)

Query: 95  IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR------ 148
            +   D+ VV+ G       E  ++  P ++ VV  +      EL+E     +       
Sbjct: 87  KRINEDVFVVMGGPHVTFTPELTMKECPCIDAVVRGEGELTFKELVEALEKNRPLKGILG 146

Query: 149 ------------------VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190
                             + + D      ++ L +     +        +    GC   C
Sbjct: 147 LSYRKENGKIKNEPPRPLIQNIDEIPMPSYDLLPMDRYKVDGT--PFGTIMTSRGCPFNC 204

Query: 191 TFCVVPYTRG-IEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFS 248
            FC      G      S+ +V++E   L +  G  EI  L       R + +D       
Sbjct: 205 VFCSSSLQFGKRWRGHSVDRVIEELSILRNEYGKKEIEFLDDTFTLNRKRAIDIAMRI-- 262

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
                  + +GL      +S     ++ + KA  +       ++  ++SGS RIL  + +
Sbjct: 263 -------KREGLDITWTASSRVNTFNEKIAKAMKEGG--CHTIYFGIESGSQRILDFIGK 313

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
             T  +    +   +     +     FI+GFP ET ++   T+    K+G   A     +
Sbjct: 314 GITPKQSIDAVKTAKKA--GLRTLGSFIIGFPDETREEVETTIRFAKKVGVDFAQFTIAT 371

Query: 369 PRLGT 373
           P  GT
Sbjct: 372 PYPGT 376


>gi|186475944|ref|YP_001857414.1| hopanoid biosynthesis associated radical SAM protein HpnJ
           [Burkholderia phymatum STM815]
 gi|184192403|gb|ACC70368.1| hopanoid biosynthesis associated radical SAM protein HpnJ
           [Burkholderia phymatum STM815]
          Length = 474

 Score = 91.9 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 60/303 (19%), Positives = 113/303 (37%), Gaps = 45/303 (14%)

Query: 99  GDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE------------RARFG 146
             +LV + G     +    L  S  ++ V   +  +   E+ E            RA  G
Sbjct: 97  PKVLVGMVGAKVAVDPHNSLTASEAIDFVCREEFDFTCKEIAEGLPFAQIKGLSYRAADG 156

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGV---------TAFLTI--QEGCDKFCTFCVV 195
               +    + +  + L  V   Y R   +           +++I    GC   CTFC+ 
Sbjct: 157 SIEHNEARPILENMDELPFVAPVYQRDLKIDNYFIGYLKHPYVSIYTGRGCRSRCTFCLW 216

Query: 196 PYTRG--IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS 253
           P T G     +RS+  V++E +            +  N+   +    D +  TF+D    
Sbjct: 217 PQTVGGHRYRTRSVENVLEEVK-----------WIRDNMPEVKEIMFDDD--TFTDFKPR 263

Query: 254 LSEIK---GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
           + EI    G + + ++ +   ++    +K   +    +  L +  +SG D+IL ++ +  
Sbjct: 264 VEEIARGLGKLGVTWSCNAKANVPYSTLKIMKE--NGLRLLLVGYESGDDQILLNIKKGL 321

Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370
                R+  +  R +   I I   FI+G PGET +  + T++    I          +P 
Sbjct: 322 RTDIARRFSEDCRKL--GIKIHGTFILGLPGETKETIQKTIEYAKDINPHTIQVSLAAPY 379

Query: 371 LGT 373
            GT
Sbjct: 380 PGT 382


>gi|262194544|ref|YP_003265753.1| radical SAM protein [Haliangium ochraceum DSM 14365]
 gi|262077891|gb|ACY13860.1| Radical SAM domain protein [Haliangium ochraceum DSM 14365]
          Length = 540

 Score = 91.9 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 53/308 (17%), Positives = 103/308 (33%), Gaps = 40/308 (12%)

Query: 72  IREKAA-----EKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNV 126
           + E                 +R       +      +VV G  +  +   I+R  P ++ 
Sbjct: 106 VTESPEVVALSTTYIYNRRALRAAVKWIRERFPRASLVVGGQYSNLKYARIMREFPSIDY 165

Query: 127 VVGPQTYYRLPELLERARFG------------------KRVVDTDYSVEDKFERLSIVDG 168
           ++        P LL+                       ++V   ++   D  E  S    
Sbjct: 166 IIRGDAEIAFPMLLDALEDKADITKVPNLVIGGPGRELRQVKLNEHVYIDIDEHPSPHFR 225

Query: 169 GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLL 228
           G +R     +      GC   C FC  P+       +S  ++ ++ R+  +    ++   
Sbjct: 226 GNHRTVPYES----MRGCPFTCKFCSFPFASPQWRYKSARKIANDWREYAEKNGAQVI-- 279

Query: 229 GQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLM 288
                             F +LL  L E+ G+    YT ++    ++ +           
Sbjct: 280 -----KAMDSTFTVPLTRFRELLELLPEV-GINWEAYTRANVIKSAEIVDALEAAH---C 330

Query: 289 PYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFR 348
             L +  +S S+  LK MN+R  A + ++  + +      +     FI+G+PGET DDF 
Sbjct: 331 QTLSIGFESLSEATLKHMNKRVRATDNQRAHELLSKS--GVDFRGSFIIGYPGETLDDFA 388

Query: 349 ATMDLVDK 356
            T   + +
Sbjct: 389 KTRQFLVE 396


>gi|107022248|ref|YP_620575.1| radical SAM family protein [Burkholderia cenocepacia AU 1054]
 gi|116689193|ref|YP_834816.1| radical SAM domain-containing protein [Burkholderia cenocepacia
           HI2424]
 gi|170732497|ref|YP_001764444.1| hopanoid biosynthesis associated radical SAM protein HpnJ
           [Burkholderia cenocepacia MC0-3]
 gi|105892437|gb|ABF75602.1| Radical SAM [Burkholderia cenocepacia AU 1054]
 gi|116647282|gb|ABK07923.1| Radical SAM domain protein [Burkholderia cenocepacia HI2424]
 gi|169815739|gb|ACA90322.1| hopanoid biosynthesis associated radical SAM protein HpnJ
           [Burkholderia cenocepacia MC0-3]
          Length = 473

 Score = 91.5 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 64/346 (18%), Positives = 123/346 (35%), Gaps = 51/346 (14%)

Query: 54  ERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAE 113
           E +   +D DL++++T              L +++            +LV + G     +
Sbjct: 61  ETLKIANDYDLVIIHTSTPSFPTDAMFAQDLKKMK----------PSMLVGMVGAKVMVD 110

Query: 114 GEEILRRSPIVNVVVGPQTYYRLPELLE------------RARFGKRVVDTDYSVEDKFE 161
               L  S  ++ V   +  Y   EL E            RA+ G    +    + +  +
Sbjct: 111 PHNSLTASEAIDFVCREEFDYTCKELAEGKPFPEIKGLSWRAKDGSIEHNEARPILENMD 170

Query: 162 RLSIVDGGYNRKRGV---------TAFLTI--QEGCDKFCTFCVVPYTRG--IEISRSLS 208
            L  V   Y R   +           +++I    GC   CTFC+ P T       +RS+ 
Sbjct: 171 ELPFVAPVYKRDLKIDNYFIGYLNYPYVSIYTGRGCKSRCTFCLWPQTVSGHRYRTRSVE 230

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK-GLVRLRYTT 267
            V+ EA+            +  N+   +    D +  T          I  G + + ++ 
Sbjct: 231 NVLAEAK-----------WIRDNMPEVKELMFDDDTFTDDLPRAEAIAIGLGKLGITWSC 279

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
           +   ++    +K   +    +  L +  +SG D+IL ++ +       R+     + +  
Sbjct: 280 NAKANVPYKSLKIMKE--NGLRLLLVGFESGDDQILVNIKKGVRTDFARRFSADCKKL-- 335

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
            I I   FI+G PGET +  + T++   +I          +P  GT
Sbjct: 336 GIKIHGTFILGLPGETQETIKKTIEYAKEINPHTIQVSLAAPYPGT 381


>gi|189425264|ref|YP_001952441.1| radical SAM protein [Geobacter lovleyi SZ]
 gi|189421523|gb|ACD95921.1| Radical SAM domain protein [Geobacter lovleyi SZ]
          Length = 428

 Score = 91.5 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 68/323 (21%), Positives = 112/323 (34%), Gaps = 34/323 (10%)

Query: 56  VNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGE 115
            N   DADLI L     +            R   L ++    G    VV+ G  A    +
Sbjct: 51  TNFDTDADLIALTAMTAQAT----------RAYQLADAFRSRGKT--VVMGGFHASNLPD 98

Query: 116 EILRRSPIVNVVVGPQTYYRLPELLERARFGK--RVVDTDYSVEDKFERLSIVDGGYNRK 173
           E L+    V+ VV  +     P LL   + G+  R+   D  ++      +  +      
Sbjct: 99  ESLQ---HVDSVVVGEGELVWPRLLADFQAGQLQRLYRADGLIDTALIPQARREIFKGSG 155

Query: 174 RGVTAFLTIQEGCDKFCTFCVVPYTRGI-EISRSLSQVVDEARKLIDNGVCEITLLGQNV 232
              T  +    GC   C FC V    G     R L QV+ E ++L       +  +  N+
Sbjct: 156 HLFTNTIQTTRGCPFDCEFCSVTAFYGRKYRKRPLEQVLAELQELRKANS-FVFFVDDNI 214

Query: 233 NAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLH 292
            A R   L        + +  +    GL  L +      +    L+KA G+       + 
Sbjct: 215 VADRRYSLP-----LFEGMKGM----GLKWLSHAPIDFAE-DQELLKAAGESG--CVGMF 262

Query: 293 LPVQSGSDRILKSMNR-RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351
           +  +S +   L +M +  + A  Y+    + R     I I   F++G  G+T   F  T+
Sbjct: 263 VGFESLNQDSLAAMGKVTNKAASYKAYAQQFRD--HGIGILGSFVMGCDGDTPAVFEQTL 320

Query: 352 DLVDKIGYAQAFSFKYSPRLGTP 374
              +      A     +P  GT 
Sbjct: 321 RFCEDARLEAAIFPILTPYPGTK 343


>gi|78187178|ref|YP_375221.1| Elongator protein 3/MiaB/NifB [Chlorobium luteolum DSM 273]
 gi|78167080|gb|ABB24178.1| Elongator protein 3/MiaB/NifB [Chlorobium luteolum DSM 273]
          Length = 471

 Score = 91.5 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 61/334 (18%), Positives = 107/334 (32%), Gaps = 34/334 (10%)

Query: 49  FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGC 108
              G +        D++ + +              L  ++              V++ G 
Sbjct: 81  ERLGEQIPEDFSPYDVVAITS------------RSLNAMKAYGIGDRALRQGKTVILGGV 128

Query: 109 VAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDG 168
                 EE       V  V G +      EL      G+               +   D 
Sbjct: 129 HPTMLHEEAASHCTSV--VYG-EIESIWTELATDILNGRMKPLYRAKELKPMGDMHRPDF 185

Query: 169 GY------NRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI-EISRSLSQVVDEARKLIDNG 221
            Y      ++K      +   +GC   C FC  P   G     R L  V++E R   +  
Sbjct: 186 SYALASKNSKKYSSRIPILATKGCPVGCNFCTTPTIYGKNYRYRELDLVIEEMRYHQERL 245

Query: 222 VCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAH 281
             E      N+ ++    +      F  LL  +S+I     +R+  +   +  D    A 
Sbjct: 246 QKE----KINL-SFMDDNISFRPKYFMTLLEEMSKIG----VRWNANISMNFLDKPEVAE 296

Query: 282 GDLDVLMPYLHLPVQSGSDRILKSMNRRHTA-YEYRQIIDRIRSVRPDIAISSDFIVGFP 340
                    L +  +S +   LKS+++       Y +++D +   R  IAI   F+ GF 
Sbjct: 297 LAGRSGCDLLSIGFESLNPETLKSVHKGSNRLDNYAKVVDNLH--RNGIAIQGYFMFGFD 354

Query: 341 GETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
            +T++ F+ T D + K           +P  GTP
Sbjct: 355 NDTEESFQLTYDFIMKNRIEFPVFSLVTPFPGTP 388


>gi|170747406|ref|YP_001753666.1| hopanoid biosynthesis associated radical SAM protein HpnJ
           [Methylobacterium radiotolerans JCM 2831]
 gi|170653928|gb|ACB22983.1| hopanoid biosynthesis associated radical SAM protein HpnJ
           [Methylobacterium radiotolerans JCM 2831]
          Length = 477

 Score = 91.5 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 70/337 (20%), Positives = 124/337 (36%), Gaps = 33/337 (9%)

Query: 54  ERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAE 113
           E V   +D DL+VL+T     K+  K    L +  N K      G  + V  AG +AQA 
Sbjct: 61  EIVAQANDFDLVVLHTSVPSFKSDVKTIEAL-KAANPKLIAGLIGAKVAVDAAGAMAQAP 119

Query: 114 GEEILRRSPIVNVVVGPQTYYRLPE---LLERARFGKRVVDTDYSVEDKFERLSIVDGGY 170
             +   R+     V        + E   L  R   G  V + D  +    ++L  V   Y
Sbjct: 120 VVDFCARNEFDFTVKEVAEGVPMSEIKGLSYRDANGVVVHNEDREIMTDMDQLPFVTSVY 179

Query: 171 NR------------KRGVTAFLTIQEGCDKFCTFCVVPYTRGIE--ISRSLSQVVDEARK 216
            R            K    +F +   GC   CTFC+ P T G     +RS++ V++E + 
Sbjct: 180 KRDLEMEKYFIGYLKHPYISFYS-GRGCKSRCTFCLWPQTVGGHTYRTRSVAHVIEEIKY 238

Query: 217 LIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDC 276
            +     E     +          +  +         ++   G + + ++ +   ++   
Sbjct: 239 CL----KEFPQTKEFFFDDDTFTDNLPRA------EEIARELGKLGVTWSCNAKANVPRE 288

Query: 277 LIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFI 336
            +K   +    +  L +  +SG+ +IL ++ +        +       +   IAI   FI
Sbjct: 289 TLKVLKE--NGLRLLLVGYESGNQQILHNIKKGMRVEVAEKFTKDCHDL--GIAIHGTFI 344

Query: 337 VGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
           +G PGET +  + T+    +I          +P  GT
Sbjct: 345 LGLPGETKETIQETIAFAKRINPHTIQVSLAAPYPGT 381


>gi|172060108|ref|YP_001807760.1| hopanoid biosynthesis associated radical SAM protein HpnJ
           [Burkholderia ambifaria MC40-6]
 gi|171992625|gb|ACB63544.1| hopanoid biosynthesis associated radical SAM protein HpnJ
           [Burkholderia ambifaria MC40-6]
          Length = 473

 Score = 91.5 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 62/346 (17%), Positives = 123/346 (35%), Gaps = 51/346 (14%)

Query: 54  ERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAE 113
           E +   +D DL++++T              L +++            +LV + G     +
Sbjct: 61  ETLKIANDYDLVIIHTSTPSFPTDAMFAQDLKKMK----------PSMLVGMVGAKVMVD 110

Query: 114 GEEILRRSPIVNVVVGPQTYYRLPELLE------------RARFGKRVVDTDYSVEDKFE 161
               L  S  ++ V   +  +   E+ E            RA+ G    +    + +  +
Sbjct: 111 PHNSLTASDAIDFVCREEFDFTCKEIAEGRPFSQIKGLSWRAKDGSIEHNEARPILENMD 170

Query: 162 RLSIVDGGYNRKRGV---------TAFLTI--QEGCDKFCTFCVVPYTRG--IEISRSLS 208
            L  V   Y R   +           +++I    GC   CTFC+ P T       +RS+ 
Sbjct: 171 ELPFVAPVYKRDLKIDNYFIGYLNYPYVSIYTGRGCKSRCTFCLWPQTVSGHRYRTRSVE 230

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK-GLVRLRYTT 267
            V+ EA+            +  N+   +    D +  T          I  G + + ++ 
Sbjct: 231 NVLAEAK-----------WIRDNMPEVKELMFDDDTFTDDLPRAEAIAIGLGKLGMTWSC 279

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
           +   ++    +K   +    +  L +  +SG D+IL ++ +       R+     + +  
Sbjct: 280 NAKANVPYKTLKVMKE--NGLRLLLVGFESGDDQILVNIKKGVRTDFARRFSADCKKL-- 335

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
            I I   FI+G PGET +  + T++   +I          +P  GT
Sbjct: 336 GIKIHGTFILGLPGETQETIKKTIEYAKEINPHTIQVSLAAPYPGT 381


>gi|296117288|ref|ZP_06835879.1| hopanoid biosynthesis associated radical SAM protein HpnJ
           [Gluconacetobacter hansenii ATCC 23769]
 gi|295976181|gb|EFG82968.1| hopanoid biosynthesis associated radical SAM protein HpnJ
           [Gluconacetobacter hansenii ATCC 23769]
          Length = 474

 Score = 91.5 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 64/352 (18%), Positives = 123/352 (34%), Gaps = 52/352 (14%)

Query: 49  FSQGYERV-NSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAG 107
              G E +   + + DL++++T      +  +V   L                + + + G
Sbjct: 56  ARMGMEPILEDVRNRDLVIMHTSTPSFASDVRVAQMLKDA----------NPAVKIGMVG 105

Query: 108 CVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE------------RARFGKRVVDTDYS 155
                + EE L  +P V+ V   +  Y + E+ E            R   GK + + D +
Sbjct: 106 AKVAVQPEESLLNAPPVDFVARNEFDYTIKEIAEGRDWKDVDGITWRDPDGKIISNRDRA 165

Query: 156 VEDKFERLSIVDGGYNRKRGVTAFLT-----------IQEGCDKFCTFCVVPYTRG--IE 202
           + +  + L  V   Y R   +  +                GC   CTFC+ P T G    
Sbjct: 166 MIEDMDSLPFVTEVYKRDLKIEDYFIGYLMHPYISIYTGRGCKSRCTFCLWPQTVGGHHY 225

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLL-YSLSEIKGLV 261
            +RS   V  E R           L  Q     +    D +  T       ++++  G +
Sbjct: 226 RTRSPEHVAAEIR-----------LAKQYFPQVKEFFFDDDTFTDDLPRAEAIAKELGKL 274

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
            + ++ +   ++    ++        +  L +  +SG+ +IL ++ +       R+    
Sbjct: 275 GVTWSCNAKANVPRKTLEVLKA--NGLRLLLVGYESGNQQILHNIKKGMRVEVAREFTKN 332

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
              +   I I   FI+G PGET +  + T+    +I          +P  GT
Sbjct: 333 CHEL--GIKIHGTFILGLPGETKETIQETIKFATEINPHTLQVSLAAPYPGT 382


>gi|163785893|ref|ZP_02180347.1| hypothetical protein HG1285_10345 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159878836|gb|EDP72886.1| hypothetical protein HG1285_10345 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 99

 Score = 91.5 bits (226), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 46/85 (54%), Gaps = 2/85 (2%)

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
           D    ++ L  L    ++     N A  G+ +EVL+E+  ++ GKLVGR+   + V    
Sbjct: 7   DPKTLSKWLTDLINVQKDIAFKRNLAYEGKTVEVLVEE--EKDGKLVGRTRTNKLVHFEG 64

Query: 443 KNHNIGDIIKVRITDVKISTLYGEL 467
            ++ +G+I+KV+IT     +L G++
Sbjct: 65  GHNLLGEIVKVKITKANRFSLEGQV 89


>gi|115351104|ref|YP_772943.1| radical SAM domain-containing protein [Burkholderia ambifaria AMMD]
 gi|115281092|gb|ABI86609.1| Radical SAM domain protein [Burkholderia ambifaria AMMD]
          Length = 473

 Score = 91.5 bits (226), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 62/346 (17%), Positives = 123/346 (35%), Gaps = 51/346 (14%)

Query: 54  ERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAE 113
           E +   +D DL++++T              L +++            +LV + G     +
Sbjct: 61  ETLKIANDYDLVIIHTSTPSFPTDAMFAQDLKKMK----------PSMLVGMVGAKVMVD 110

Query: 114 GEEILRRSPIVNVVVGPQTYYRLPELLE------------RARFGKRVVDTDYSVEDKFE 161
               L  S  ++ V   +  +   E+ E            RA+ G    +    + +  +
Sbjct: 111 PHNSLTASDAIDFVCREEFDFTCKEIAEGRPFSQIKGLSWRAKDGSIEHNEARPILENMD 170

Query: 162 RLSIVDGGYNRKRGV---------TAFLTI--QEGCDKFCTFCVVPYTRG--IEISRSLS 208
            L  V   Y R   +           +++I    GC   CTFC+ P T       +RS+ 
Sbjct: 171 ELPFVAPVYKRDLKIDNYFIGYLNYPYVSIYTGRGCKSRCTFCLWPQTVSGHRYRTRSVE 230

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK-GLVRLRYTT 267
            V+ EA+            +  N+   +    D +  T          I  G + + ++ 
Sbjct: 231 NVLAEAK-----------WIRDNMPEVKELMFDDDTFTDDLPRAEAIAIGLGKLGMTWSC 279

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
           +   ++    +K   +    +  L +  +SG D+IL ++ +       R+     + +  
Sbjct: 280 NAKANVPYKTLKVMKE--NGLRLLLVGFESGDDQILVNIKKGVRTDFARRFSADCKKL-- 335

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
            I I   FI+G PGET +  + T++   +I          +P  GT
Sbjct: 336 GIKIHGTFILGLPGETQETIKKTIEYAKEINPHTIQVSLAAPYPGT 381


>gi|237739284|ref|ZP_04569765.1| radical SAM domain-containing protein [Fusobacterium sp. 2_1_31]
 gi|294783743|ref|ZP_06749067.1| BchE/P-methylase [Fusobacterium sp. 1_1_41FAA]
 gi|229422892|gb|EEO37939.1| radical SAM domain-containing protein [Fusobacterium sp. 2_1_31]
 gi|294480621|gb|EFG28398.1| BchE/P-methylase [Fusobacterium sp. 1_1_41FAA]
          Length = 444

 Score = 91.5 bits (226), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 58/324 (17%), Positives = 112/324 (34%), Gaps = 39/324 (12%)

Query: 54  ERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAE 113
           E +N  +  DL+V+    +    A++ Y    + R            + V+  G     E
Sbjct: 51  ELINYDEKTDLVVI---SVETYTAKRAYEIAKKFRE---------KGIKVLAGGYHPTVE 98

Query: 114 GEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRK 173
            EE L      +++VG        ++LE  +     +   Y        +       +RK
Sbjct: 99  PEECLENFD--SIIVGN-AENVWLKMLEDCKNNN--LQEKYFGTSTSFAMPDRSIYKDRK 153

Query: 174 RGVTAFLTIQEGCDKFCTFCVV-PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNV 232
               A +    GC+  C FC +  Y       R + +VV + +   ++G   +  +  N 
Sbjct: 154 YSPLALIETGRGCNFSCEFCAIHSYYEKKYYRRPVEEVVQDIK---NSGKKYVFFIDDNF 210

Query: 233 NAWRGKGLDGEKCTFSDLLYSLSEIK-GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL 291
            A     L        ++  +++ +K   V     T    D    L+            +
Sbjct: 211 VADHNYAL--------EICKAIAPLKIKWVTQGAITMAKND---ELLYWMKKSG--CKMV 257

Query: 292 HLPVQSGSDRILKSMNRRHTAYEYR--QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
            +  +S +  ILK M +   +      ++ ++I S    I I + F+ GF  ++ + F  
Sbjct: 258 LIGYESMNPNILKDMGKGWRSSVGEINELTNKIHSY--GIGIYATFVFGFGDDSQEVFDE 315

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGT 373
           T+    K  +  A      P   T
Sbjct: 316 TVKFAKKHSFFFAAFNHLVPFPKT 339


>gi|301063385|ref|ZP_07203924.1| radical SAM domain protein [delta proteobacterium NaphS2]
 gi|300442548|gb|EFK06774.1| radical SAM domain protein [delta proteobacterium NaphS2]
          Length = 491

 Score = 91.5 bits (226), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 62/331 (18%), Positives = 121/331 (36%), Gaps = 34/331 (10%)

Query: 58  SMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEI 117
            ++ ADL+ +    I++K+A ++ S              +   + VV  G +  A+ E+ 
Sbjct: 62  DLERADLVFIGAMAIQQKSAREIISR------------CKNASVTVVAGGPLFTAQHEDF 109

Query: 118 LRRSPIVNVVVGPQTYYRLPELLERARFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGV 176
                 V+  V  +    LP  L+    G  + +    +  D  +  + +      K   
Sbjct: 110 A----GVDHFVLNEAEITLPLFLDDLNRGNPKAIYETSAYADIQKSPAPLWELAKLKSYA 165

Query: 177 TAFLTIQEGCDKFCTFCVVPYTRGIEISR--SLSQVVDEARKLIDNGVCEITLLGQNVNA 234
              +    GC   C FC V    G   SR  +  Q+V E   L + G         +   
Sbjct: 166 AMAVQFSRGCPFNCEFCNVTALFG-HQSRFKTAEQIVFELDSLYERGWRGSVFFADD--- 221

Query: 235 WRGKGLDGEKCTFSDLLYSLSEIKGLVR-LRYTTSHPRDMSDC--LIKAHGDLDVLMPYL 291
                +   K   + LL +L+  +   R + + T    D++D   L+     +      +
Sbjct: 222 ---NFISNRKYLKNHLLPALARWRNGKRGIPFNTEASVDLADDDALMNLM--VKAGFESV 276

Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV-RPDIAISSDFIVGFPGETDDDFRAT 350
            + +++  +  L   N++H     R ++  ++ + R  + +   FIVGF  +T   F   
Sbjct: 277 FIGIETPDEVCLSECNKKHNR--NRDLVQSVKRIQRGGLQVQGGFIVGFDSDTRSIFERQ 334

Query: 351 MDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +D + K G   A         GT     L++
Sbjct: 335 IDFIQKSGIVTAMVGMLQAPPGTKLYERLKR 365


>gi|117924423|ref|YP_865040.1| radical SAM protein [Magnetococcus sp. MC-1]
 gi|117608179|gb|ABK43634.1| Radical SAM domain protein [Magnetococcus sp. MC-1]
          Length = 525

 Score = 91.5 bits (226), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 62/320 (19%), Positives = 117/320 (36%), Gaps = 35/320 (10%)

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVV-----------------G 129
           I+ + +   +   D  +++ G  A    E+       ++ V                  G
Sbjct: 75  IKRVADMAKQLFPDKPLILGGPHANLYPEQSAC-YKNIDYVAYGDGEATTAALLKAAAAG 133

Query: 130 PQTYYRLPELLERARFGKRVVDTDYSVEDKFE-RLSIVDGGYNRKRGVTAFLTIQEGCDK 188
                ++P L  +   G  V      +E  F+    ++D       G    +    GC  
Sbjct: 134 SIDPAKIPGLCYQQADGTVVRTPPQPIEPFFDIDYDLLDPRVRHYFGKYIQVLAGRGCPF 193

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS 248
            CTFC V  +      RS+  + ++   LI     ++      +          +K    
Sbjct: 194 RCTFCYVSPSAKSWQGRSIESLFEQLDALIAQYDSKVVYFRDELFFH-------DKQRIR 246

Query: 249 DLLYSLSE----IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304
           D +    E     K     R +      ++  +++   +  V    L +  +SGSD ILK
Sbjct: 247 DFIRLYRERNYHFKWRASCRASDFGDNFITQEMVQDLAE--VGCSCLKMGFESGSDTILK 304

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
           ++ +       +  +  + + +P+I I+  FI+GFP ET  D+RATM L++ I       
Sbjct: 305 AIKKGIKVKNIQTAVTML-AKQPEIQINCSFIMGFPQETPADYRATMQLINWIRKQATNF 363

Query: 365 FKYSPRLG--TPGSNMLEQV 382
           +   P+     PG  + E+V
Sbjct: 364 YMVGPQYYRVYPGGALYEEV 383


>gi|78222387|ref|YP_384134.1| radical SAM family protein [Geobacter metallireducens GS-15]
 gi|78193642|gb|ABB31409.1| Radical SAM [Geobacter metallireducens GS-15]
          Length = 563

 Score = 91.5 bits (226), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 71/324 (21%), Positives = 117/324 (36%), Gaps = 41/324 (12%)

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVV---GPQTYYRLPELLER--- 142
            L     K     L +  G  A    E IL +   V+ V+   G +T+  L   +ER   
Sbjct: 79  RLAALAKKVDPTCLTIFGGPHATHAFESILVKYREVDGVILGEGEETFLDLARAVERGDR 138

Query: 143 ---------ARFGKRVVDTDYSVEDKFERLSIV-----DGGYNRKRGVTAFLTIQEGCDK 188
                     R G +V           + L +      D      R    F+    GC  
Sbjct: 139 SLTGIVGLAYRKGAKVHSVKRPPVADLDVLPLPALHMNDAWGCDVRRQLEFIITSRGCPA 198

Query: 189 FCTFCVVPYTRGI-EISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCT 246
            C FC  P   G     RS   +VDE R + D  G+   +L        + + +D  +  
Sbjct: 199 ACRFCSSPRFWGKSLRFRSPRAMVDEIRAIRDRYGLIYFSLRDDTFTVRKDRVIDFCRLL 258

Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306
             + ++ L             S    + + ++            +   V+SGS++IL  +
Sbjct: 259 LEEKVHIL---------WNCQSRVNAVDEEMLIWMRRAG--CECVQYGVESGSEKILAYL 307

Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
            ++ T  + R+      + R  I++S   I G PGETDDD +AT+ L+  I         
Sbjct: 308 GKQITPEQVRRAAKA--TRRAGISLSIYLISGVPGETDDDLQATLTLISNI---LPHDGH 362

Query: 367 YSPRLGTPGSNMLEQVDENVKAER 390
            +P    PG+ + +   E V+  R
Sbjct: 363 VAPLAYYPGTALFD---EAVREGR 383


>gi|57640832|ref|YP_183310.1| hypothetical protein TK0897 [Thermococcus kodakarensis KOD1]
 gi|57159156|dbj|BAD85086.1| hypothetical protein, conserved, radical SAM superfamily
           [Thermococcus kodakarensis KOD1]
          Length = 581

 Score = 91.5 bits (226), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 80/454 (17%), Positives = 152/454 (33%), Gaps = 48/454 (10%)

Query: 59  MDDADLIV----LNTCHIREKAAEKVYSFLGR-IRNLKNSRIKEGGDLLVVVAGCVAQAE 113
           ++ AD+IV    L+T      A       + R +   K  +I  G   +   +    +  
Sbjct: 76  LEKADIIVYIGGLHTPGKYLSAVPGSVEEVARFLTQFKGEKILGGPAFMGSASMGGIKIT 135

Query: 114 GEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERL--SIVDGGYN 171
             E+     + + VV       L + L   +    +    Y+    +  +   +V    +
Sbjct: 136 SRELQLAHQVFDHVVYGDLEAFLFDYLSNPKDADPLRFRTYAELRDYAIIGAEVVKQFPD 195

Query: 172 RKRGVTAFLTIQEGCDK-----FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEIT 226
               V   +  Q GC K      C+FC  P        RS+  VV E + L   GV    
Sbjct: 196 YPDFVIVEIETQRGCPKAMGIGGCSFCTEPVRYRRVEDRSVEDVVAEVKALYTLGVRHFR 255

Query: 227 LLGQNVNAWRGKGLDG-----EKCTFSDLLYSLSEIKGLVR-LRYTTSHPRDMSDCLIKA 280
           +  Q+         DG            L   +  +   V+ L    ++P  +++   ++
Sbjct: 256 VGRQSCIFSYMAKPDGRVPIPNPEAVEKLFRGIRSVAPNVKTLHVDNANPAVIANYPDES 315

Query: 281 HGDLDVLMPYLH------LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV--------R 326
                 L+ Y          ++S   ++ K  N   TA E  + +  +  +         
Sbjct: 316 RRIAKALIEYGTPGDVVAFGLESADPKVAKLNNLNATAEETYEAVKLLNEIGGRRGYNGM 375

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR-----LGTPGSNMLEQ 381
           P +    + I G PGET   +  T   + ++        + + R      GTP  +M ++
Sbjct: 376 PWLLPGINIIFGLPGETKKSYEITFQFLKRLLDDGLMVRRINIRQVVVFPGTPLWHMRDK 435

Query: 382 VDENVKAERLLCLQKKLR-EQQVSFNDACVGQIIE---VL--IEKHGKEKGKLVGR-SPW 434
           V    K E+   L +  R + +   +   + +++    VL  +     + G   GR    
Sbjct: 436 V----KVEKHKKLIQHYRYKIRHEIDLPMLRRVVPVGTVLRDVRAEVFDNGLTYGRQIGS 491

Query: 435 LQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
              +V   K   +     V I D    ++ G  V
Sbjct: 492 YPLIVGMPKQVPLNKFYDVLIVDHGFRSITGIPV 525


>gi|14590686|ref|NP_142754.1| methyltransferase [Pyrococcus horikoshii OT3]
 gi|6686119|sp|O58549|Y819_PYRHO RecName: Full=Uncharacterized methyltransferase PH0819
 gi|3257229|dbj|BAA29912.1| 459aa long hypothetical methyltransferase [Pyrococcus horikoshii
           OT3]
          Length = 459

 Score = 91.5 bits (226), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 54/299 (18%), Positives = 101/299 (33%), Gaps = 36/299 (12%)

Query: 98  GGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER--------------- 142
             ++ VV+ G       E  +R  P ++ VV  +      EL++                
Sbjct: 93  NENVFVVMGGPHVTFTPELTMRECPCIDAVVRGEGELTFKELVDALSKGRELKGILGLSY 152

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTA------FLTIQEGCDKFCTFCVVP 196
              GK   +    +    + + I            A       +    GC   C FC   
Sbjct: 153 KENGKVRNEPPRPLIQNVDEIPIPSYDLLPMDKYKADGVPFGVVMTSRGCPFNCVFCSSS 212

Query: 197 YTRG-IEISRSLSQVVDEARK-LIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL 254
              G      S+ +V++E      + G+ EI  L       + + +D      S  +   
Sbjct: 213 LQFGKRWRGHSVERVIEELSILHYEYGIKEIEFLDDTFTLNKKRAID-----ISLRIKQ- 266

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
              +GL      +S     ++ + KA  +       ++  ++S S RIL+ + +  T  +
Sbjct: 267 ---EGLDISWTASSRVNTFNEKVAKAMKEGG--CHTVYFGIESASPRILEFIGKGITPQQ 321

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
               +   +     +     FI+GFP ET ++  AT+    K+    A     +P  GT
Sbjct: 322 SIDAVKTAKKF--GLHALGSFIIGFPDETREEVEATIKFAKKLDIDYAQFTIATPYPGT 378


>gi|46202018|ref|ZP_00208353.1| COG1032: Fe-S oxidoreductase [Magnetospirillum magnetotacticum
           MS-1]
          Length = 483

 Score = 91.5 bits (226), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 49/259 (18%), Positives = 94/259 (36%), Gaps = 21/259 (8%)

Query: 129 GPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGG---YNRKRGVTA---FLTI 182
           G + + ++P L+ R      V +   ++  + + L   D     + R    +A    +  
Sbjct: 136 GERDFAKVPNLIRRTEECGLVANPATAMISELDDLPYPDFEAFEFERYNYYSAKALPIIT 195

Query: 183 QEGCDKFCTFCVVPYTRGI-EISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGL 240
             GC   C +C V  + G     R+   +VDE        G+    +     +      L
Sbjct: 196 SRGCPYKCNYCSVKLSMGRGFRKRNPESIVDEMEFWKKRYGIRRFEVNDDCFS------L 249

Query: 241 DGEKC-TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
           D ++     DL+  +    G+    Y       +S+ L++          ++    +SG 
Sbjct: 250 DLKRAEAICDLI--IERKLGITYEMYNGIRADRVSEVLLRKMKASG--CVFVSFGCESGD 305

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
             I+ +M ++    + R  ++  R V   I  S +FIVG   ET + F+ T+D    +  
Sbjct: 306 QEIVYNMGKKLKLEDVRNAVELTRKV--GIRNSVNFIVGHRNETFEAFQRTLDFAASLPT 363

Query: 360 AQAFSFKYSPRLGTPGSNM 378
                +   P  GT     
Sbjct: 364 DFVNFYNLVPYPGTEVYEW 382


>gi|296242228|ref|YP_003649715.1| radical SAM domain-containing protein [Thermosphaera aggregans DSM
           11486]
 gi|296094812|gb|ADG90763.1| Radical SAM domain protein [Thermosphaera aggregans DSM 11486]
          Length = 498

 Score = 91.2 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 55/291 (18%), Positives = 111/291 (38%), Gaps = 28/291 (9%)

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPI-VNVVVGPQTYYRLPELLERAR 144
            IR  K   +K      ++  G  A     E+ +     V+ VV  +    + +L+ERA 
Sbjct: 127 EIRKAKEKGVK------IIAGGPAAWQWLYEVKKLIEWGVDTVVDGEGEKVVIDLVERAL 180

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
               +    Y   +  +  S+ +    R   V   + I  GC + C FC V         
Sbjct: 181 NNDPLPKYVYVGAE--DVPSVDEIPIIRGGSVNGLVEIMRGCPRGCKFCSVTL--RPLRF 236

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG----- 259
             + ++V E +  +  GV    L  ++V  +   G+         L   + ++ G     
Sbjct: 237 IPIDKIVKEIQVNLSAGVKGTILHSEDVLLYHADGVKPRPEPILKLHEEVVKLVGDKGSF 296

Query: 260 -LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY-----LHLPVQSGSDRILKSMNR----R 309
               +  +     + +  LI       +L        + + +++GS R+ K + R     
Sbjct: 297 AWSHVSLSALKYAEENYKLISRLMHEYLLTESRRFIGVEVGIETGSVRLAKEIMRGKSLP 356

Query: 310 HTAYEYRQIIDRIRSVRPD--IAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           +    +  I++    +  +  I  ++  I+GFPGET DD   T++L++++ 
Sbjct: 357 YPIENWPDIVEDAFRIMHENFIIPAATVILGFPGETGDDVVKTIELIERLK 407


>gi|91792526|ref|YP_562177.1| radical SAM family protein [Shewanella denitrificans OS217]
 gi|91714528|gb|ABE54454.1| Radical SAM [Shewanella denitrificans OS217]
          Length = 566

 Score = 91.2 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 66/428 (15%), Positives = 136/428 (31%), Gaps = 76/428 (17%)

Query: 39  YDSLRM-------EDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLK 91
           Y++  +         +   +  ER+ S D  D+I      +   +  +      +I    
Sbjct: 111 YETETLIAPNIYRLGITEEEFAERIESSDH-DVICF---SMIYSSDIENLYRYAKIVKQV 166

Query: 92  NSRIKEGGDLLVVVAGCVAQAEGEEI------LRRSPIVNVVVGPQTYYRLPELLERARF 145
                     +V+  G  A    E+           P+++ V+  +  +RL   +E  + 
Sbjct: 167 AKDK------VVMAGGMHASIYPEQFIRDAGQWDDQPVIDFVIRGEGEFRLIHFIENLQQ 220

Query: 146 GKRVVDTD-------------------------------YSVEDKFERLSIVDGGYNRKR 174
           G+  +  D                                   +K+   ++    Y R  
Sbjct: 221 GRFDIHADGLVGWHDGDVFINPQYTQIQDLNDLPFPAYHKLPLEKYFHHNVPFSPYPRGN 280

Query: 175 GVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVN 233
            V   +    GC   CTFC          SRS+  V++E +      G+ EI     N+ 
Sbjct: 281 RVM-QIYTSRGCPIGCTFCSSTNFNKAYRSRSVENVIEEIKFYQREYGIDEIQFADDNLT 339

Query: 234 AWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHL 293
                    +K     L   L ++  +            + + ++ A     +    + L
Sbjct: 340 F--------DKKRSIKLFNELEKLN-IQWCTPNGIMINTLDEQVLDAMIRSGLY--QITL 388

Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP--DIAISSDFIVGFPGETDDDFRATM 351
            + SG+   L+    +H      Q +  +        + +    +VG PGET +D     
Sbjct: 389 SLDSGNADTLR---EKHRKPVKLQRVPVLMDYLKKRGVLMHGTLVVGMPGETVEDIEKGF 445

Query: 352 DLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVG 411
             V+ + +     F      G+    +  Q +  +  E  L +       +++  D   G
Sbjct: 446 RYVETLPFNSMNVFIAQALPGSELFEVSLQ-NGAITYETSLYIDTAQSTLKLTDID---G 501

Query: 412 QIIEVLIE 419
           +++E L+E
Sbjct: 502 KVLEALVE 509


>gi|312602556|ref|YP_004022401.1| radical SAM superfamily protein [Burkholderia rhizoxinica HKI 454]
 gi|312169870|emb|CBW76882.1| Radical SAM superfamily [Burkholderia rhizoxinica HKI 454]
          Length = 473

 Score = 91.2 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 47/246 (19%), Positives = 93/246 (37%), Gaps = 29/246 (11%)

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGV---------TAFLTI--QEGCDKFC 190
           R   G    +    + +  + L  V   Y R   +           +++I    GC   C
Sbjct: 151 RLADGSIEHNPPRPMIENMDALPFVAPVYKRDLKIDNYFIGYLKHPYVSIYTGRGCRSRC 210

Query: 191 TFCVVPYTRGIEISR--SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK-CTF 247
           TFC+ P T G    R  S+  V++E +            +  N+   +    D +    F
Sbjct: 211 TFCLWPQTVGGHRYRVRSVENVLEEVK-----------WIRDNMPEVKEIMFDDDTFTDF 259

Query: 248 SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307
              + +++   G + + ++ +   ++    +K   +    +  L +  +SG D+IL ++ 
Sbjct: 260 KPRVEAIARGLGKLGVTWSCNAKANVPYSTLKIMKE--NGLRLLLVGYESGDDQILLNIK 317

Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           +       R+  +  R +   I I   FI+G PGET +  + T+    +I          
Sbjct: 318 KGLRTDIARRFSEDCRKL--GIKIHGTFILGLPGETRETIQKTIAYAKEINPHTIQVSLA 375

Query: 368 SPRLGT 373
           +P  GT
Sbjct: 376 APYPGT 381


>gi|146338719|ref|YP_001203767.1| Mg-protoporphyrin IX monomethyl ester oxidative cyclase 66kD
           subunit [Bradyrhizobium sp. ORS278]
 gi|146191525|emb|CAL75530.1| Mg-protoporphyrin IX monomethyl ester oxidative cyclase 66kD
           subunit [Bradyrhizobium sp. ORS278]
          Length = 534

 Score = 91.2 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 60/356 (16%), Positives = 112/356 (31%), Gaps = 47/356 (13%)

Query: 42  LRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDL 101
             M +    +    +   +  D+I    C     +  K    L   +        E  D 
Sbjct: 45  DAMTNDLSEEQVRSILRSEKPDVI---GCTAITPSIYKAERLLEIAKE-------EHPDA 94

Query: 102 LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK-------------- 147
           L V+ G  A    +++L  +P ++ +V  +    + +L+     G+              
Sbjct: 95  LTVLGGIHATFMYQQVLTEAPWIDAIVRGEGEEIIVDLMRAREDGRWQNDRRSIKGIAYR 154

Query: 148 ---RVVDTDYSVEDKFERLSIVDGG--------YNRKRGVTAFLTIQEGCDKFCTFCVVP 196
               VV T  +   K       D          Y       A   +  GC   C+FC   
Sbjct: 155 DGGEVVATVAAPTVKNLDAITPDWSVLEWSKYIYIPMNKRVAIPNMARGCPFTCSFCSQW 214

Query: 197 YTRGIEISRSLSQVVDEARKLIDNG-VCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
                   R   +VVDE   L+    V    L  +     + K +        +L+    
Sbjct: 215 KFWRDYRIRDPKKVVDEIETLMREHDVGFFILADEEPTINKKKFV----AFCEELIRRDL 270

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
           +I   +  R T     +    L+  +    ++  ++ L  ++ +   L   N+  T  + 
Sbjct: 271 KILWGINTRVTDILRDEA---LLPLYRKAGLI--HVSLGTEAAAQMKLDRFNKETTVAQN 325

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
           ++ I  +R     I + + FIVG   ET +    T  +        A    Y+P  
Sbjct: 326 KKAIQLLRDA--GIVVEAQFIVGLENETRETLEETYQMARDWKPDLANWAMYTPWP 379


>gi|332525075|ref|ZP_08401254.1| magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative
           cyclase [Rubrivivax benzoatilyticus JA2]
 gi|332108363|gb|EGJ09587.1| magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative
           cyclase [Rubrivivax benzoatilyticus JA2]
          Length = 555

 Score = 91.2 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 59/374 (15%), Positives = 113/374 (30%), Gaps = 66/374 (17%)

Query: 43  RMEDMFFSQGYE-------RVNSMDD-----------ADLIVLNTCHIREKAAEKVYSFL 84
            +     + GY          N + +            D++    C     A  K    L
Sbjct: 28  YLAGYLKAGGYTDVIFVDAMTNDLSEDQVREKITTLKPDIV---GCTAITPAIYKAERTL 84

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVV---GPQTYYRLPELLE 141
             ++ +         D++ V+ G        ++L+ +P ++ +V   G Q    L   ++
Sbjct: 85  QIVKEV-------NPDIVTVLGGIHGTFMYPQVLKEAPWIDAIVRGEGEQVMLNLVTAVD 137

Query: 142 RARF----------------GKRVVDTDYSVEDKFERLSIVDGG-------YNRKRGVTA 178
           + RF                GK V        +  +R++   G        Y       A
Sbjct: 138 QGRFMADRNCVNGIAFATPDGKVVATPAEPPIEDLDRITPDWGILEWDKYIYIPMNKRVA 197

Query: 179 FLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK 238
                 GC   C+FC           R   +VVDE   L+        +L          
Sbjct: 198 IPNFARGCPFTCSFCSQWKFWRDYRIRDPKKVVDEIEVLVKQHDVGFFILADEEPTIH-- 255

Query: 239 GLDGEKCTFSDLLYSLSEIK-GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQS 297
                +  F +    L +   G++    T        + L+       ++  ++ L  ++
Sbjct: 256 -----RKKFIEFCEELIKRDLGVLWGINTRVTDILRDEKLLPLFRKAGLI--HVSLGTEA 308

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
            +   L   N+  T  + ++ I  ++     I   + FIVG   ET +    T  +    
Sbjct: 309 AAQLKLDMFNKETTIEQNKRAIQLLKDN--GIVTEAQFIVGLENETAETLEETYRMARDW 366

Query: 358 GYAQAFSFKYSPRL 371
               A    Y+P  
Sbjct: 367 NPDMANWAMYTPWP 380


>gi|219670007|ref|YP_002460442.1| radical SAM protein [Desulfitobacterium hafniense DCB-2]
 gi|219540267|gb|ACL22006.1| Radical SAM domain protein [Desulfitobacterium hafniense DCB-2]
          Length = 449

 Score = 91.2 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 58/317 (18%), Positives = 105/317 (33%), Gaps = 35/317 (11%)

Query: 60  DDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILR 119
           +  DL+ +    +    A  VYS   R R L            V + G       EE   
Sbjct: 56  EKVDLVAI---TVNTPNAPHVYSVSKRFREL---------GAWVALGGPHVTLNPEEAAC 103

Query: 120 RSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAF 179
                + +   +     PE L+    G              + L I           T+ 
Sbjct: 104 HG---DTIFVGEAEETWPEFLKDFLSGNMQKVYTSLQVPSLDGLPIPRRDLIVGHRFTSG 160

Query: 180 LTI-QEGCDKFCTFCVVPYTR-GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG 237
                 GC   C++C +         +R + +V+ +   + +           N  A   
Sbjct: 161 AVFASRGCPHHCSYCSLKKIYHNKLRTRPVDEVIKDIGSMPN---KYFVFWDDNFFA--- 214

Query: 238 KGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQS 297
                +      LL  L+ +      + T     D  + L+           YL L ++S
Sbjct: 215 -----DPVYTKALLKELARLNKRWAAQVTAYSCED--EELLSLAKSAG--CLYLFLGLES 265

Query: 298 GSDRILKSMNRRHTA-YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
            S++ L+  N+      EY ++++++   R  I+I +  + GF  +T D F  T+   +K
Sbjct: 266 FSEQGLRDANKNFNKIEEYGKVVNKLH--RHGISIQAGIVFGFDSDTLDVFETTLKACNK 323

Query: 357 IGYAQAFSFKYSPRLGT 373
           IG     +   +P  GT
Sbjct: 324 IGVDGVTASILTPFPGT 340


>gi|254303168|ref|ZP_04970526.1| iron-sulfur (Fe-S) dehydrogenase [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
 gi|148323360|gb|EDK88610.1| iron-sulfur (Fe-S) dehydrogenase [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
          Length = 434

 Score = 91.2 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 61/326 (18%), Positives = 118/326 (36%), Gaps = 36/326 (11%)

Query: 61  DADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRR 120
           + DL+V+ T              L   R    +       + VV+ G  A    EE+   
Sbjct: 53  EVDLVVITT------------FTLTAKRAYTIADNYRKKGIYVVIGGYHASLIPEEVQEY 100

Query: 121 SPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFL 180
           +  V   VG         L+E      + V  +  + D  E +       +++      +
Sbjct: 101 ADTV--FVGSAEGNWERFLIELENGNPQKVYEEIKLPDISEVVYDRSLFKDKRYSFVVPV 158

Query: 181 TIQEGCDKFCTFCVVPYT-RGIEISRSLSQVVDEARKLID--NGVCEITLLGQNVNAWRG 237
               GC   C FC +    RG    R +  V++E +++         I  +  N+ A   
Sbjct: 159 QFGRGCMHQCEFCTIGSVHRGDYAHRRVELVIEEIKEIFKTNKRAKVIYFVDDNIFA--- 215

Query: 238 KGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM--SDCLIKAHGDLDVLMPYLHLPV 295
                 K     L   L ++K    +++      D+   + L+K   +   +   + L  
Sbjct: 216 -----NKKKALHLFNELKKLK----IKWACQGSIDIAKDEELVKLMSESGCI--EMLLGF 264

Query: 296 QSGSDRILKSMNRRHTAYE-YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           ++ +   +K MN++      Y  II   +  R  I + + +++G+  +T D F+  +D  
Sbjct: 265 ENINIMNIKKMNKKSNYDFDYENIIRIFKKYR--ILVHASYVIGYDYDTKDYFQEILDFS 322

Query: 355 DKIGYAQAFSFKYSPRLGTPGSNMLE 380
           +K  +  A      P  GTP  + L+
Sbjct: 323 NKHKFFLAGFNPALPIPGTPFYDRLK 348


>gi|269929314|ref|YP_003321635.1| Radical SAM domain-containing protein [Sphaerobacter thermophilus
           DSM 20745]
 gi|269788671|gb|ACZ40813.1| Radical SAM domain protein [Sphaerobacter thermophilus DSM 20745]
          Length = 519

 Score = 91.2 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 45/231 (19%), Positives = 79/231 (34%), Gaps = 15/231 (6%)

Query: 153 DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVD 212
            +   D  +     D    R    +  +    GC   C +C  P       +RS   V  
Sbjct: 185 PFPAWDLVDVPRYRDIWLRRHGYFSMNMVTTRGCPFHCNWCAKPIWGQRYNARSPENVAA 244

Query: 213 EARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
           E + L DN   +      ++   +     G    ++D +  L      VR  + + H  D
Sbjct: 245 ELKWLRDNYQPDHIWFVDDIMGLK----PGWLQRYADEVERLG-----VRTPFKSLHRVD 295

Query: 273 M--SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330
           +      I+A          + +  +SGS RIL +M +     +  ++  R+ +    I 
Sbjct: 296 LLLRGDTIEALARAG--AQIVWVGAESGSQRILDAMEKGTKVEQIVEVARRLHAA--GIQ 351

Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +      G+PGET  D   T+ +V              P  GTP    ++ 
Sbjct: 352 VGFFLQFGYPGETRADIELTLQMVRDCQPDDIGVSVAYPLPGTPFHERVKD 402


>gi|326386874|ref|ZP_08208489.1| hopanoid biosynthesis associated radical SAM protein HpnJ
           [Novosphingobium nitrogenifigens DSM 19370]
 gi|326208677|gb|EGD59479.1| hopanoid biosynthesis associated radical SAM protein HpnJ
           [Novosphingobium nitrogenifigens DSM 19370]
          Length = 474

 Score = 91.2 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 60/347 (17%), Positives = 122/347 (35%), Gaps = 53/347 (15%)

Query: 54  ERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAE 113
           +  + +D+ DL++L+T              L   R +K          ++ + G     E
Sbjct: 62  DIAHEVDNRDLVILHTST------PSFQQDLHTARLIKQR----NPKAMIGLIGAKVAVE 111

Query: 114 GEEILRRSPIVNVVVGPQTYYRLPELLE------------RARFGKRVVDTDYSVEDKFE 161
            +  L  S  ++ V   +  + + ++ E            R   GK V + D ++    +
Sbjct: 112 TQASLEASTDIDFVCRNEFDFTIKDVAEGMPLSEVEGISYRDADGKIVHNKDRAIITDMD 171

Query: 162 RLSIVDGGYNRKRGVTAFLT-----------IQEGCDKFCTFCVVPYTRG--IEISRSLS 208
            L  V   Y R   +  +                GC   CTFC+ P T G     +RS+ 
Sbjct: 172 TLPFVSPIYKRDLKIENYFIGYLKHPYISFYTGRGCKSRCTFCLWPQTVGGHNYRTRSIP 231

Query: 209 QVVDEARKLIDN--GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
            V++E + +      V E+      +                +L   L ++     + ++
Sbjct: 232 HVIEEVKYVQREFPQVKELFFDDDTLT--------DNLPRVEELARELGKLG----ITWS 279

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
            +   ++    +K   +       L +  +SG+ +IL ++ +       ++      ++ 
Sbjct: 280 CNAKANVPYETLKIMKE--NGCRLLLVGYESGNQQILHNIKKGLRIEVAKRFTRDCHAL- 336

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
             IAI   FI+G PGET +    ++    +I          +P  GT
Sbjct: 337 -GIAIHGTFILGLPGETLETIEESIRYAIEINPHTIQVSLAAPYPGT 382


>gi|134295201|ref|YP_001118936.1| radical SAM domain-containing protein [Burkholderia vietnamiensis
           G4]
 gi|134138358|gb|ABO54101.1| Radical SAM domain protein [Burkholderia vietnamiensis G4]
          Length = 473

 Score = 91.2 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 64/346 (18%), Positives = 123/346 (35%), Gaps = 51/346 (14%)

Query: 54  ERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAE 113
           E +   +D DL++++T              L +++            LLV + G     +
Sbjct: 61  ETLKIANDYDLVIIHTSTPSFPTDAMFAQDLKKMK----------PSLLVGMVGAKVMVD 110

Query: 114 GEEILRRSPIVNVVVGPQTYYRLPELLE------------RARFGKRVVDTDYSVEDKFE 161
               L  S  ++ V   +  Y   E+ E            RA+ G    +    + +  +
Sbjct: 111 PHNSLTASDAIDFVCREEFDYTCKEIAEGKPFPEIKGLSWRAKDGSIEHNEARPILENMD 170

Query: 162 RLSIVDGGYNRKRGV---------TAFLTI--QEGCDKFCTFCVVPYTRG--IEISRSLS 208
            L  V   Y R   +           +++I    GC   CTFC+ P T       +RS+ 
Sbjct: 171 ELPFVAPIYKRDLKIDNYFIGYLNYPYVSIYTGRGCKSRCTFCLWPQTVSGHRYRTRSVE 230

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK-GLVRLRYTT 267
            V+ EA+            +  N+   +    D +  T          I  G + + ++ 
Sbjct: 231 NVLAEAK-----------WIRDNMPEVKELMFDDDTFTDDLPRAEAIAIGLGKLGMTWSC 279

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
           +   ++    +K   +    +  L +  +SG D+IL ++ +       R+     + +  
Sbjct: 280 NAKANVPYKSLKIMKE--NGLRLLLVGFESGDDQILVNIKKGVRTDFARRFSADCKKL-- 335

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
            I I   FI+G PGET +  + T++   +I          +P  GT
Sbjct: 336 GIKIHGTFILGLPGETPETIKKTIEYAKEINPHTIQVSLAAPYPGT 381


>gi|281412626|ref|YP_003346705.1| Radical SAM domain protein [Thermotoga naphthophila RKU-10]
 gi|281373729|gb|ADA67291.1| Radical SAM domain protein [Thermotoga naphthophila RKU-10]
          Length = 551

 Score = 91.2 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 52/299 (17%), Positives = 100/299 (33%), Gaps = 38/299 (12%)

Query: 165 IVDGGYNRKRGVTAFLTIQEGCDKF--CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGV 222
           +V   +     V   + +  GC++   C+FC  P   G   SR +  ++ E   L   G 
Sbjct: 163 VVLEKHPNFPHVICEIEVSRGCERRTFCSFCTEPLLHGRLKSRDVQAILKEIESLYMTGC 222

Query: 223 CEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSD----CLI 278
                         G   +G K +       L E+    R            +     L+
Sbjct: 223 RAFRFGRAANILAFGSDRNGGKPS----PEILEELYSGTREVAPHLEVLHTDNANPSYLV 278

Query: 279 KAHGDLDVLMPY----------LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV--- 325
               +   ++                V+S  + +LK  N + +  E+ + I  +  +   
Sbjct: 279 THERECRKIVETIVRYNTPGDVFSFGVESFDESVLKKNNIQGSPEEFLKAIAVVNEIGGV 338

Query: 326 ----RPDIAISSDFIVGFPGETDDDFRATMDLVDKI-----GYAQAFSFKYSPRLGTPGS 376
                P +    + I G PGET++  +     + +I        +    K     GTP  
Sbjct: 339 RVDGIPKLLPGVNLIFGLPGETEETLKKNYSYLKRILEEGYLLRRINIRKLLAYPGTPVY 398

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACV---GQII-EVLIEKHGKEKGKLVGR 431
             L+     +K+      ++K+RE+        V   G ++ +V++E   +E     GR
Sbjct: 399 EYLKNKKHRIKSHLHEQWKRKIREEIDHEMLKRVFPAGTVLKKVIVE--YREGKISFGR 455


>gi|237739286|ref|ZP_04569767.1| radical SAM domain-containing protein [Fusobacterium sp. 2_1_31]
 gi|229422894|gb|EEO37941.1| radical SAM domain-containing protein [Fusobacterium sp. 2_1_31]
          Length = 434

 Score = 91.2 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 62/339 (18%), Positives = 122/339 (35%), Gaps = 34/339 (10%)

Query: 47  MFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVA 106
           + F +  E +    + DL+V+ T              L   R    +       + VV+ 
Sbjct: 39  LLFDERIENIPMDLEVDLVVITT------------FTLTAKRAYTIADNYRKKGIYVVIG 86

Query: 107 GCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIV 166
           G  A    EE+   +  V   VG         L+E      + V  +  + D  E +   
Sbjct: 87  GYHASLMPEEVQEYADTV--FVGSAEGNWEKFLIELENGHPQKVYEEIKLPDISEVVYDR 144

Query: 167 DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR-GIEISRSLSQVVDEARKLI--DNGVC 223
               ++K      +    GC   C FC +     G    R +  V++E +++   +    
Sbjct: 145 SLFKDKKYSFVVPVQFGRGCMHQCEFCTIGSVHKGDYAHRKVELVIEEIKEIFRTNKRAK 204

Query: 224 EITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM--SDCLIKAH 281
            I  +  N+ A         K     L   L ++K    +++      D+   + L+K  
Sbjct: 205 VIYFVDDNIFA--------NKKKALHLFNELKKLK----IKWACQGSIDIAKDEDLVKLM 252

Query: 282 GDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPG 341
            +   +   + L  ++ +   +K MN++       + I RI      I + + +++G+  
Sbjct: 253 SESGCI--EMLLGFENINIMNIKKMNKKSNYDFDYENIIRIFKK-HRILVHASYVIGYDY 309

Query: 342 ETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           +T D F+  +D  +K  +  A      P  GTP  + L+
Sbjct: 310 DTKDYFQEILDFSNKHKFFLAGFNPALPIPGTPFYDRLK 348


>gi|251771492|gb|EES52069.1| putative cobalamin B12-binding/Radical SAM family protein
           [Leptospirillum ferrodiazotrophum]
          Length = 627

 Score = 91.2 bits (225), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 57/359 (15%), Positives = 119/359 (33%), Gaps = 55/359 (15%)

Query: 44  MEDMFFSQGYERVNSMDD-----------ADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92
           +  M   +G++    ++D           AD++ ++T                  ++ + 
Sbjct: 31  LGTMLRDRGWDVRVYIEDVAPIDMKEVLSADIVGISTLTSTAP------------QSYRL 78

Query: 93  SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF------- 145
           ++      + VV+ G       +E L  S  V    G +T + L E ++  R        
Sbjct: 79  AQKVRDAGIPVVIGGTHVSFMADEALEYSDYVVRGEGEETLFELIEAMDGTRSIEKILGL 138

Query: 146 -----GKRVVDTDYSVEDKFERLSIVD----GGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
                G+++ + D  +++  +   I D     G+N ++     +    GC   CTFC VP
Sbjct: 139 SYWKGGRKMHNPDRPLKEDLDSNPIPDYSLVEGWNTQKRGLISIATSRGCPFTCTFCSVP 198

Query: 197 YTRGI-EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
              G      S+ +V++E R               ++           +    DLL  + 
Sbjct: 199 GMYGHGFRMHSIERVIEEIRVNNPK----YVFFADDL-------FTANRKRTKDLLKRMI 247

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
           E                    L++     +     + +  +S + + L   N+R T  + 
Sbjct: 248 EEGLTPEWGAQIRTETAFDPELLELMKASNCFN--VFIGFESINPQTLDLFNKRQTYEKI 305

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
            + ++  +     I I   F+VG   +  +    T  L  +           +P  G+P
Sbjct: 306 VRSVEAFKK--HGIRIHGMFVVGADTDDKETIFETARLAREWELQSIQLMILTPLPGSP 362


>gi|326200972|ref|ZP_08190844.1| Radical SAM domain protein [Clostridium papyrosolvens DSM 2782]
 gi|325988540|gb|EGD49364.1| Radical SAM domain protein [Clostridium papyrosolvens DSM 2782]
          Length = 423

 Score = 91.2 bits (225), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 57/316 (18%), Positives = 104/316 (32%), Gaps = 33/316 (10%)

Query: 80  VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL 139
             SF+  ++ L +   K+G    +++ G       +EIL  +     ++GP      P+L
Sbjct: 75  YKSFIPELKVLVSQIRKDGYQGKIILGGAGFSIMPKEILDITEADYGIIGPGE-KSFPKL 133

Query: 140 LERARFGKRVVD-TDYSVEDKFERLSIVDGGYNRKRGVTAF-----------LTIQEGCD 187
           LE+ +  +       Y  ED +E    V            F           +T + GC+
Sbjct: 134 LEKLQNNEDPPHLIIYDTEDLYENPFTVSQQLIELNAKFNFEWYKQFHGSIGITTKRGCN 193

Query: 188 KFCTFCVVPYTRGIEIS-RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT 246
             C +C  P   G     R    VV+E    I             +        D     
Sbjct: 194 YNCIYCTYPIIEGRTCHLRKPEDVVNEMEFYIK-----------TMGINYFLFTDSVFND 242

Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRD---MSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
             +   S+++      L    +   D   ++   I    D       + L + SGS+ +L
Sbjct: 243 PVEHSRSIAQEIKRRELPVCWTGSVDLGNLTREDILLFKDTG--CEGVDLGMDSGSNEVL 300

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           K   +        +  +  +    D+ +  + I+G PGET++    T  L++K       
Sbjct: 301 KRYGKSCDTKAIYKATEECK--LQDMPVYFNIILGGPGETEETLNETFSLLEKTEPESTG 358

Query: 364 SFKYSP-RLGTPGSNM 378
                     TP   +
Sbjct: 359 IVIGMRIYPKTPLYYL 374


>gi|167586671|ref|ZP_02379059.1| Radical SAM domain protein [Burkholderia ubonensis Bu]
          Length = 473

 Score = 91.2 bits (225), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 61/346 (17%), Positives = 123/346 (35%), Gaps = 51/346 (14%)

Query: 54  ERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAE 113
           E +   +D DL++++T              L +++            +LV + G     +
Sbjct: 61  ETLKIANDYDLVIIHTSTPSFPTDAMFAQDLKKMK----------PSMLVGMVGAKVMVD 110

Query: 114 GEEILRRSPIVNVVVGPQTYYRLPELLE------------RARFGKRVVDTDYSVEDKFE 161
               L  +  ++ V   +  +   E+ E            RA+ G    +    + +  +
Sbjct: 111 PHNSLTATEAIDFVCREEFDFTCKEIAEGKPFPEIKGLSWRAKDGSIEHNEARPILENMD 170

Query: 162 RLSIVDGGYNRKRGV---------TAFLTI--QEGCDKFCTFCVVPYTRG--IEISRSLS 208
            L  V   Y R   +           +++I    GC   CTFC+ P T       +RS+ 
Sbjct: 171 ELPFVAPVYKRDLKIDNYFIGYLNYPYVSIYTGRGCKSRCTFCLWPQTVSGHRYRTRSVE 230

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK-GLVRLRYTT 267
            V+ EA+            +  N+   +    D +  T          I  G + + ++ 
Sbjct: 231 NVLAEAK-----------WIRDNMPEVKELMFDDDTFTDDLPRAEAIAIGLGKLGMTWSC 279

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
           +   ++    +K   +    +  L +  +SG D+IL ++ +       R+     + +  
Sbjct: 280 NAKANVPYKSLKVMKE--NGLRLLLVGFESGDDQILVNIKKGVRTDFARRFSADCKKL-- 335

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
            I I   FI+G PGET +  + T++   +I          +P  GT
Sbjct: 336 GIKIHGTFILGLPGETQETIKKTIEYAKEINPHTIQVSLAAPYPGT 381


>gi|262066480|ref|ZP_06026092.1| BchE/P-methylase family protein [Fusobacterium periodonticum ATCC
           33693]
 gi|291379812|gb|EFE87330.1| BchE/P-methylase family protein [Fusobacterium periodonticum ATCC
           33693]
          Length = 444

 Score = 90.8 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 50/323 (15%), Positives = 104/323 (32%), Gaps = 37/323 (11%)

Query: 54  ERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAE 113
           E +N  +  DL+V+    +    A++ Y    + R      +  G    V    C+    
Sbjct: 51  ELINYDEKTDLVVI---SVETYTAKRAYEIAKKFREKGIKVLAGGYHPTVEPEECL---- 103

Query: 114 GEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRK 173
                      + ++         ++LE  +     +   Y        +       +RK
Sbjct: 104 --------ENFDSIITGNAENVWLKMLEDCKNNN--LQKKYIGTSTSFAMPDRSIYKDRK 153

Query: 174 RGVTAFLTIQEGCDKFCTFCVV-PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNV 232
               A +    GC+  C FC +  Y       R + +VV + +   ++G   +  +  N 
Sbjct: 154 YSPLALIETGRGCNFSCEFCAIHSYYEKKYYRRPVEEVVQDIK---NSGKKYVFFIDDNF 210

Query: 233 NAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLH 292
            A     L+  K      +  +++           +     +  L+            + 
Sbjct: 211 VADHSYALEICKAIAPLKIKWVTQ----------GAITMAKNHELLYWMKKSG--CKMVL 258

Query: 293 LPVQSGSDRILKSMNRRHTAYEYR--QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
           +  +S +  ILK M +   +      ++  +I S    I I + F+ GF  ++ + F  T
Sbjct: 259 IGYESMNPNILKDMGKGWRSSVGEINELTQKIHSY--GIGIYATFVFGFGDDSQEVFDET 316

Query: 351 MDLVDKIGYAQAFSFKYSPRLGT 373
           +    K  +  A      P   T
Sbjct: 317 VKFAKKHSFFFAAFNHLVPFPKT 339


>gi|148257635|ref|YP_001242220.1| Mg-protoporphyrin IX monomethyl ester oxidative cyclase 66kD
           subunit [Bradyrhizobium sp. BTAi1]
 gi|146409808|gb|ABQ38314.1| Mg-protoporphyrin IX monomethyl ester oxidative cyclase 66kD
           subunit [Bradyrhizobium sp. BTAi1]
          Length = 534

 Score = 90.8 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 59/356 (16%), Positives = 112/356 (31%), Gaps = 47/356 (13%)

Query: 42  LRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDL 101
             M +    +    +   +  D+I    C     +  K    L   +        E  + 
Sbjct: 45  DAMTNDLSEEQVRAILRSEKPDVI---GCTAITPSIYKAERLLEIAKE-------EHPEA 94

Query: 102 LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK-------------- 147
           L V+ G  A    +++L  +P ++ +V  +    + +L+     G+              
Sbjct: 95  LTVLGGIHATFMYQQVLTEAPWIDAIVRGEGEEIIVDLMRAREDGRWERDRRSIKGIAYR 154

Query: 148 ---RVVDTDYSVEDKFERLSIVDGG--------YNRKRGVTAFLTIQEGCDKFCTFCVVP 196
               VV T  +   K       D          Y       A   +  GC   C+FC   
Sbjct: 155 DGTEVVATVAAPTVKNLDAITPDWSVLEWSKYIYIPMNKRVAIPNMARGCPFTCSFCSQW 214

Query: 197 YTRGIEISRSLSQVVDEARKLIDNG-VCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
                   R   +VVDE   L+    V    L  +     + K +        +L+    
Sbjct: 215 KFWRDYRIRDPKKVVDEIETLMREHDVGFFILADEEPTINKKKFV----AFCEELIRRDL 270

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
           +I   +  R T     +    L+  +    ++  ++ L  ++ +   L   N+  T  + 
Sbjct: 271 KILWGINTRVTDILRDEA---LLPLYRKAGLI--HVSLGTEAAAQMKLDRFNKETTVAQN 325

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
           ++ I  +R     I + + FIVG   ET +    T  +        A    Y+P  
Sbjct: 326 KKAIQLLRDA--GIVVEAQFIVGLENETRETLEETYQMARDWKPDLANWAMYTPWP 379


>gi|218883859|ref|YP_002428241.1| Fe-S oxidoreductase [Desulfurococcus kamchatkensis 1221n]
 gi|218765475|gb|ACL10874.1| Fe-S oxidoreductase [Desulfurococcus kamchatkensis 1221n]
          Length = 505

 Score = 90.8 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 52/298 (17%), Positives = 113/298 (37%), Gaps = 28/298 (9%)

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPI-VNVVVGPQTYYRLPELLERARF 145
           +R  K   +K      ++V G  A     E+       V+ +V  +    + EL+E+A  
Sbjct: 134 VRKAKEKGVK------IIVGGPAAWQWLYELELMDKWGVDTIVDGEGEKVVVELVEKALR 187

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            + +    Y      +   + +    +   V   + I  GC + C FC V          
Sbjct: 188 NEPL--PRYVYVGAGDVPGVNEIPVIKGASVNGLVEIMRGCPRGCRFCSVTL--RPLRFI 243

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            L +++ E    I +G+    L  ++V  +   G+         L   + E  G  R   
Sbjct: 244 PLEKILAEIDVNIRSGLKGAILHSEDVLLYHADGVKPRPDPILRLHREVLERIGEKRSLA 303

Query: 266 TTSHP------RDMSDCLIKAHGDLDVLMPY-----LHLPVQSGS----DRILKSMNRRH 310
            +          + +  LI    +  VL  +     + + +++GS      I+++ +  +
Sbjct: 304 WSHASLAAVKYAEENHKLISKLMNELVLNEHRRFLGVEVGIETGSVKLAHEIMRAKSSPY 363

Query: 311 TAYEYRQIIDRIRSVRPD--IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
              E+  +++    +  +  I  ++  I+G PGET DD   T++L++++   ++    
Sbjct: 364 PVEEWPNVVEDAFRIMHENKIIPAATVILGIPGETPDDVMKTIELIERLKPYRSIIVP 421


>gi|20094865|ref|NP_614712.1| Fe-S oxidoreductase [Methanopyrus kandleri AV19]
 gi|19888092|gb|AAM02642.1| Fe-S oxidoreductase [Methanopyrus kandleri AV19]
          Length = 509

 Score = 90.8 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 76/394 (19%), Positives = 142/394 (36%), Gaps = 65/394 (16%)

Query: 15  SQIVDQCIVPQRFFVKSYGCQMNVYDSL------------RMEDMFFSQGYERVNSMDDA 62
           S  V + I+P   +   + C    YD              R+E     +GY+      DA
Sbjct: 31  SACVPKGIIPDWLYFSVF-CPSVEYDEETGEVKEAPLGIRRIEAQLRREGYDVAVVHPDA 89

Query: 63  -------DLIVLN------------TCHIR----EKAAEKVYS--FLGRIRNLKNSRIKE 97
                  D I +             T        + A  KV     + RIR LK+     
Sbjct: 90  VHKAIDEDTIAVGVSEIDPQGMGPATTTFTSFSGKPAYMKVCFEDLMERIRELKDRY--- 146

Query: 98  GGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVE 157
                V + G  A    E   R    V+ ++  +  Y + E++ R   G R ++      
Sbjct: 147 --GFGVFMGGPGAWQVAETFPRF--GVDFLIMGEGEYVVGEVVRRIEEGDRGLEIVRGKP 202

Query: 158 DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKL 217
              E +  +             + +  GC + C FC  P  R    S  LS+++++    
Sbjct: 203 VAAEDIPTIVNPT-----TNGIVEVARGCGRGCKFCS-PDMR-ELRSFPLSKILEDVDVN 255

Query: 218 IDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT---SHPRDMS 274
           +  G  EI L  ++V  ++  G         +L  ++    G+ R+  +    S      
Sbjct: 256 VRGGHEEILLHAEDVLRYKADGWRPNVEAVLELFSAVMNRPGVKRVSVSHVALSTVCQFD 315

Query: 275 DCL--IKAHGDLDVLMPYL--HLPVQSGSDRILKSMN----RRHTAYEYRQIIDRIRSVR 326
           + L  I     +  L+P++   + V++GS R++          +   E+  ++++   + 
Sbjct: 316 ERLGEISEVAGVGELVPWMGAQVGVETGSPRLMAEHMPGKVAPYKVEEWPDVVEQAFGIM 375

Query: 327 --PDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
                      I+G PGET+DD   T++L+D++ 
Sbjct: 376 NDHGWVPCGTLILGLPGETEDDVMMTVELLDRLR 409


>gi|301058656|ref|ZP_07199657.1| radical SAM domain protein [delta proteobacterium NaphS2]
 gi|300447220|gb|EFK10984.1| radical SAM domain protein [delta proteobacterium NaphS2]
          Length = 495

 Score = 90.8 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 52/252 (20%), Positives = 99/252 (39%), Gaps = 30/252 (11%)

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTI--QEGCDKFCTFCVVPYTRGIEISR 205
           RV  T    E+     + +D     K  +   L +    GC   C FC   +       R
Sbjct: 174 RVTFTPRREEEIHMDQTAIDWAGIPKEYLRHTLPVNSSRGCYYRCRFCTYHWLFPRVHYR 233

Query: 206 SLSQVVDEARKLIDNGV-CEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           SL  + +E + + + G    +     N  A             +D + ++ E+    +  
Sbjct: 234 SLDVLREELKAVNELGFVRHVRFTDDNFTAR------------NDRIKAVLEMMIREKFS 281

Query: 265 YTTS---HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           +  S       ++  L+K          +L L ++SGS +IL +M++R ++ +  + +  
Sbjct: 282 FKWSSFARASALTPELVKLMRQSG--CEFLDLGLESGSQKILDNMDKRLSSKQSFEAVRM 339

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK--IGYAQAFSFKYSPRLGTPGSNML 379
           +      I     FI+G+PGET   F  T+D +++  + Y Q + F Y+       + ++
Sbjct: 340 LND--HGIVSRGSFIIGYPGETRGTFFETIDFINESGLPYYQPYLFYYT------ANTLV 391

Query: 380 EQVDENVKAERL 391
            Q  E  K   L
Sbjct: 392 HQEREERKLRGL 403


>gi|301059815|ref|ZP_07200709.1| radical SAM domain protein [delta proteobacterium NaphS2]
 gi|300446141|gb|EFK10012.1| radical SAM domain protein [delta proteobacterium NaphS2]
          Length = 466

 Score = 90.8 bits (224), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 61/354 (17%), Positives = 123/354 (34%), Gaps = 44/354 (12%)

Query: 44  MEDMFFSQGYERVNSMDD-----------ADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92
           +  +   +GY+    ++D           +D++ ++T       A + Y    R+R L  
Sbjct: 32  LSTILRERGYDVKTFIEDLAAPDWSFIERSDIVCIST---ITSTAIRAYRMGKRVRALHI 88

Query: 93  SRIKEGGDLLVVVAGCVAQAEG-------EEILRRSPIVNVVVGPQTYYRLPELLERARF 145
             I  G     +    +  A+          ++     ++   G      +  L  R R 
Sbjct: 89  PVIMGGAHPTFLPDEAMDYADFVIRGEGENALVELLEHIDK--GVPNLEDIKGLSYRDRE 146

Query: 146 GKRVVDTDYSVEDKFERLSIVDGG--YNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI-E 202
           GK V +      +  + L   D    +N     T  +    GC   C+FC V    G   
Sbjct: 147 GKIVHNPAGHFLEDLDSLPTPDFSLVHNWTPSNTYPVATSRGCPYECSFCSVIGMFGRKY 206

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
             +S+   + E +  +        ++  N  A         K     +L ++  I   +R
Sbjct: 207 RCKSVEGTLAELKHAVSVSKAVKFIVDDNFAA--------NKTRTKQILRAM--IAEKIR 256

Query: 263 LRYTTSHPRDM--SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R++     ++     L++   D       L + ++S + R L+  ++     + + I+ 
Sbjct: 257 TRWSAQVRTEVGRDPELLRLMADSG--CDTLFIGLESINPRTLEEYHKN---QDLQDIVT 311

Query: 321 RIRSVR-PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
            IR+VR   I I   F++G   +     R T+D   ++          +P  GT
Sbjct: 312 CIRAVRDHGIHIHGMFVLGAETDDVKTIRETVDFAQRLAIDTIQIMILTPLPGT 365


>gi|115525930|ref|YP_782841.1| magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative
           cyclase [Rhodopseudomonas palustris BisA53]
 gi|115519877|gb|ABJ07861.1| magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative
           cyclase [Rhodopseudomonas palustris BisA53]
          Length = 560

 Score = 90.8 bits (224), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 61/388 (15%), Positives = 126/388 (32%), Gaps = 64/388 (16%)

Query: 43  RMEDMFFSQGY----------ERVNSMDDADLI------VLNTCHIREKAAEKVYSFLGR 86
            +     + G+          E  +    A +I      V+ T  I   +  K    L  
Sbjct: 28  YLAGALKTNGFTDLKFIDAMTEDTSEEKLAQIIAEYKPDVVGTTSIT-PSIYKAEQTLKT 86

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
            + +          ++ ++ G  A    +++L  +P V+V+V  +    + EL      G
Sbjct: 87  AKAV-------NPKIVTMLGGVHATFMYQQVLTEAPWVDVIVRGEGEEIVVELARAIESG 139

Query: 147 KRVVDTDY-----------------------------SVEDKFERLSIVDGGYNRKRGVT 177
               +                                +++  +  L      Y       
Sbjct: 140 NWPANRSEIKGLAYTDVINGENQIVATAAAPTVKDLDAIKPDWGILDWTLYKYIPMNTRV 199

Query: 178 AFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWR 236
           A   +  GC   C+FC           R   +VVDE  +L++   V    L  +     R
Sbjct: 200 AIPNMARGCPFTCSFCSQWKFWRDYRVRDPKKVVDEIEELVEKYQVGFFILADEEPTINR 259

Query: 237 GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQ 296
            K +   +   +  L    +++  +  R T     +    L+K + +  ++  ++ L  +
Sbjct: 260 KKFIQFCEELIARGLNK--KVQWGINTRVTDILRDEA---LLKFYNEAGLM--HVSLGTE 312

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
           + +   L   N+     + ++ I  +R     I + + FIVG   ET +    T  +   
Sbjct: 313 AAAQLKLDLFNKETKISDNKKAIRLLREA--GIVVEAQFIVGLDSETPETLEETYRMAMD 370

Query: 357 IGYAQAFSFKYSPRLGTPGSN-MLEQVD 383
                A    Y+P   TP    + ++V+
Sbjct: 371 WKPDLANWSMYTPWPFTPLFKELSDKVE 398


>gi|297526146|ref|YP_003668170.1| Radical SAM domain protein [Staphylothermus hellenicus DSM 12710]
 gi|297255062|gb|ADI31271.1| Radical SAM domain protein [Staphylothermus hellenicus DSM 12710]
          Length = 474

 Score = 90.8 bits (224), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 70/323 (21%), Positives = 112/323 (34%), Gaps = 49/323 (15%)

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF----- 145
           K  + + G D++V+  G       EE L     ++VVV  +  Y   EL+          
Sbjct: 87  KLVKEELGNDVIVIAGGPHPTYMYEEALSN--GIDVVVRGEGEYTTLELVNTIEKYGLDK 144

Query: 146 ---------------GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT--------AFLTI 182
                          GK VV          + L             T        A +  
Sbjct: 145 NTLKEIKGIAFKDDSGKAVVTPPRPFIQNLDELPWPARHLLPMDKYTLFGKPIRIAHVMA 204

Query: 183 QEGCDKFCTFCVVPYTRG-IEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGL 240
             GC   C +C+  Y  G     RS   V DE   L++      I     ++   R    
Sbjct: 205 SRGCPYGCIYCITSYFWGRRIRFRSAKNVADEVEFLVNKYKANHIAFSDDDLVINRRF-- 262

Query: 241 DGEKCTFSDLLYSLSEIK--GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
                    +L  + EIK  GL       S    ++  ++K     D     L+  V+S 
Sbjct: 263 ---------VLGFIDEIKKRGLDITFSCGSRVNHINKEILKTL--YDNGCTALYFGVESA 311

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           S   L  + +R T  +  ++   ++ ++   A+ S FI+GFP ET DD + T+D   K+ 
Sbjct: 312 SQETLNRIGKRITIEQAERVFKWVKELK-GFALGS-FILGFPWETIDDMKKTVDFAIKLD 369

Query: 359 YAQAFSFKYSPRLGTPGSNMLEQ 381
              A     +P  GTP     ++
Sbjct: 370 PNYAQFTVLTPYPGTPLFEYAKK 392


>gi|226944171|ref|YP_002799244.1| MoaA, NifB, PqqE, radical SAM superfamily protein [Azotobacter
           vinelandii DJ]
 gi|226719098|gb|ACO78269.1| MoaA, NifB, PqqE, radical SAM superfamily protein [Azotobacter
           vinelandii DJ]
          Length = 470

 Score = 90.8 bits (224), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 65/339 (19%), Positives = 123/339 (36%), Gaps = 53/339 (15%)

Query: 63  DLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSP 122
           +L++++T         K    L   R           ++L+ + G     +  + L  S 
Sbjct: 65  ELVIIHTSTPSFPTDAKFAELLKARR----------PEVLIGMVGAKVAVDPTDSLNAST 114

Query: 123 IVNVVVGPQTYYRLPELLE------------RARFGKRVVDTDYSVEDKFERLSIVDGGY 170
            ++ V   +  Y   E+ E            +   G    +   +  +  + L  V   Y
Sbjct: 115 AIDFVAREEFDYTCKEIAEGHPLEEVAGVSYKLADGDVRHNPPRAPIENMDDLPFVAPVY 174

Query: 171 NRKRGV---------TAFLTI--QEGCDKFCTFCVVPYTRGIEISR--SLSQVVDEARKL 217
            R   +           +++I    GC   CTFC+ P T G    R  S + V+ EA+  
Sbjct: 175 KRDLKIDRYFIGYLKHPYVSIYTGRGCRSKCTFCLWPQTVGGHRYRVRSAASVIAEAK-- 232

Query: 218 IDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI-KGLVRLRYTTSH--PRDMS 274
                     + +N+   +    D +  T +  L  + EI +GL  L +T S     ++ 
Sbjct: 233 ---------WIKENMPEVKELMFDDDTFTDTSNLERVHEIARGLHALGWTWSCNAKANVP 283

Query: 275 DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSD 334
              +K   +    +  L +  +SG D+IL ++ +       R+  +    +   I +   
Sbjct: 284 YESLKIMKE--NGLRLLLVGYESGDDQILHNIKKGLRTDIARKFTENCHKL--GIQVHGT 339

Query: 335 FIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
           FI+G PGET +    T++   +I          +P  GT
Sbjct: 340 FILGLPGETKETIAKTIEFAKEINPHTVQVSLAAPYPGT 378


>gi|256003299|ref|ZP_05428291.1| Radical SAM domain protein [Clostridium thermocellum DSM 2360]
 gi|255992990|gb|EEU03080.1| Radical SAM domain protein [Clostridium thermocellum DSM 2360]
 gi|316939214|gb|ADU73248.1| Radical SAM domain protein [Clostridium thermocellum DSM 1313]
          Length = 453

 Score = 90.8 bits (224), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 49/274 (17%), Positives = 90/274 (32%), Gaps = 23/274 (8%)

Query: 103 VVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFER 162
           V + G       EE        + +   +     P+ L      K       S       
Sbjct: 99  VALGGPHVTLNPEEAALHC---DTIFIGEAEETWPQFLNDFLCKKAQKVYTSSRAPSLAG 155

Query: 163 LSIVDGGYNRKRGVTAFLTI-QEGCDKFCTFCVVPYTR-GIEISRSLSQVVDEARKLIDN 220
           L I            +       GC   C++C +         +R + +V+ +   + + 
Sbjct: 156 LPIPRRDLIVGNRFISGAVFASRGCPHNCSYCSLKKIYHNTFRTRPVDEVIKDIASMPN- 214

Query: 221 GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKA 280
                     N  A        +      LL  L+++      + T     D  + L++ 
Sbjct: 215 --KYFVFWDDNFFA--------DPSYTKALLKDLAKLNKKWAAQVTAHSCED--EELLRL 262

Query: 281 HGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA-YEYRQIIDRIRSVRPDIAISSDFIVGF 339
                    YL L ++S S++ LK  N+      +Y +I D++   R  I+I +  + GF
Sbjct: 263 AKSAG--CLYLFLGLESFSEQGLKDANKSFNKIEQYGKIADKLH--RHGISIQAGIVFGF 318

Query: 340 PGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
             +T D F  T+   + IG     +   +P  GT
Sbjct: 319 DSDTPDVFETTLKACNDIGIDGVTASILTPFPGT 352


>gi|281418534|ref|ZP_06249553.1| Radical SAM domain protein [Clostridium thermocellum JW20]
 gi|281407618|gb|EFB37877.1| Radical SAM domain protein [Clostridium thermocellum JW20]
          Length = 453

 Score = 90.8 bits (224), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 49/274 (17%), Positives = 90/274 (32%), Gaps = 23/274 (8%)

Query: 103 VVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFER 162
           V + G       EE        + +   +     P+ L      K       S       
Sbjct: 99  VALGGPHVTLNPEEAALHC---DTIFIGEAEETWPQFLNDFLCKKAQKVYTSSRAPSLAG 155

Query: 163 LSIVDGGYNRKRGVTAFLTI-QEGCDKFCTFCVVPYTR-GIEISRSLSQVVDEARKLIDN 220
           L I            +       GC   C++C +         +R + +V+ +   + + 
Sbjct: 156 LPIPRRDLIVGNRFISGAVFASRGCPHNCSYCSLKKIYHNTFRTRPVDEVIKDIASMPN- 214

Query: 221 GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKA 280
                     N  A        +      LL  L+++      + T     D  + L++ 
Sbjct: 215 --KYFVFWDDNFFA--------DPSYTKALLKDLAKLNKKWAAQVTAHSCED--EELLRL 262

Query: 281 HGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA-YEYRQIIDRIRSVRPDIAISSDFIVGF 339
                    YL L ++S S++ LK  N+      +Y +I D++   R  I+I +  + GF
Sbjct: 263 AKSAG--CLYLFLGLESFSEQGLKDANKSFNKIEQYGKIADKLH--RHGISIQAGIVFGF 318

Query: 340 PGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
             +T D F  T+   + IG     +   +P  GT
Sbjct: 319 DSDTPDVFETTLKACNDIGIDGVTASILTPFPGT 352


>gi|125975050|ref|YP_001038960.1| radical SAM family protein [Clostridium thermocellum ATCC 27405]
 gi|125715275|gb|ABN53767.1| Radical SAM [Clostridium thermocellum ATCC 27405]
          Length = 441

 Score = 90.8 bits (224), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 49/274 (17%), Positives = 90/274 (32%), Gaps = 23/274 (8%)

Query: 103 VVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFER 162
           V + G       EE        + +   +     P+ L      K       S       
Sbjct: 87  VALGGPHVTLNPEEAALHC---DTIFIGEAEETWPQFLNDFLCKKAQKVYTSSRAPSLAG 143

Query: 163 LSIVDGGYNRKRGVTAFLTI-QEGCDKFCTFCVVPYTR-GIEISRSLSQVVDEARKLIDN 220
           L I            +       GC   C++C +         +R + +V+ +   + + 
Sbjct: 144 LPIPRRDLIVGNRFISGAVFASRGCPHNCSYCSLKKIYHNTFRTRPVDEVIKDIASMPN- 202

Query: 221 GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKA 280
                     N  A        +      LL  L+++      + T     D  + L++ 
Sbjct: 203 --KYFVFWDDNFFA--------DPSYTKALLKDLAKLNKKWAAQVTAHSCED--EELLRL 250

Query: 281 HGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA-YEYRQIIDRIRSVRPDIAISSDFIVGF 339
                    YL L ++S S++ LK  N+      +Y +I D++   R  I+I +  + GF
Sbjct: 251 AKSAG--CLYLFLGLESFSEQGLKDANKSFNKIEQYGKIADKLH--RHGISIQAGIVFGF 306

Query: 340 PGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
             +T D F  T+   + IG     +   +P  GT
Sbjct: 307 DSDTPDVFETTLKACNDIGIDGVTASILTPFPGT 340


>gi|305662909|ref|YP_003859197.1| Radical SAM domain protein [Ignisphaera aggregans DSM 17230]
 gi|304377478|gb|ADM27317.1| Radical SAM domain protein [Ignisphaera aggregans DSM 17230]
          Length = 523

 Score = 90.8 bits (224), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 59/308 (19%), Positives = 116/308 (37%), Gaps = 20/308 (6%)

Query: 73  REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT 132
           +E    K +  L    +   +  K G  ++V            E++ R   ++V+V  + 
Sbjct: 120 KEPVNRKSFIRLME-SDAVRAMKKRGVKIVVGGPAAWQWLWEPELVERW-GIDVIVDGEA 177

Query: 133 YYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTF 192
              + E++E+    ++V    Y      E   I      +   V   + I  GC + C F
Sbjct: 178 DIAIIEIVEKLLNNEKV--PRYISIGAREVPPIEKIPIIKGASVNGLIEITRGCPRGCKF 235

Query: 193 CVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLY 252
           C V           + +++ E    I NGV    L  ++V  +   G++        L  
Sbjct: 236 CSVTL--RPLRHMPIERILKEIDVNISNGVKGAVLHSEDVLLYGAHGVEPNADAVLKLHE 293

Query: 253 SLS-EIKGLVRLR--YTTSHPRDMSDCLIK-----AHGDLDVLMPYLHLPVQSGSDRILK 304
           ++  +I+ L                  LI       + +LD     + + +++GS R+ K
Sbjct: 294 AVVKKIESLAWAHASLAAIVVSQRKYRLISRVTETIYSNLDQNYLGVEVGIETGSPRLAK 353

Query: 305 SMN----RRHTAYEYRQIIDRIRSVRPD--IAISSDFIVGFPGETDDDFRATMDLVDKIG 358
            +           E+  I++   S+  D  I  ++ FI+G PGE  DD   T++L+D++ 
Sbjct: 354 IIMPAKALPFRVEEWPDIVEEAFSIMHDHRIIPAATFILGLPGEEPDDVVKTIELLDRLK 413

Query: 359 YAQAFSFK 366
             ++    
Sbjct: 414 KYRSLIVP 421


>gi|218778091|ref|YP_002429409.1| radical SAM domain protein [Desulfatibacillum alkenivorans AK-01]
 gi|218759475|gb|ACL01941.1| Radical SAM domain protein [Desulfatibacillum alkenivorans AK-01]
          Length = 427

 Score = 90.8 bits (224), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 61/309 (19%), Positives = 103/309 (33%), Gaps = 38/309 (12%)

Query: 74  EKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTY 133
           +        FL        +  KE     VV+ G       +EIL  S     V G Q  
Sbjct: 71  DNQDRTKPLFLIEPVKKIAAACKEASAAPVVIGGAGFTMFPDEILAYSGGDLGVAG-QGE 129

Query: 134 YRLPELLERARFGKR--------------------VVDTDYSVEDKFERLSIVDGGYNRK 173
               ELL+R                          V + D       E+  IV   ++ K
Sbjct: 130 ESFCELLDRMEQKAALDGIPGLVVPGEPFDGRLAAVRNLDAWPLPLPEKHMIVPEHWDLK 189

Query: 174 RGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS-RSLSQVVDEARKLIDNGVCEITLLGQNV 232
             V   +  + GC   C++C      G  +  RS   V +  RK +D G      +  N 
Sbjct: 190 S-VMVPIQSRRGCALDCSYCSTKNIEGRILHKRSPDTVAENVRKFMDKGFRYF-FIADNT 247

Query: 233 NAWRGKGLDGEKCTFSDLLYSLSE-IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL 291
                   +        L  +L E   G         +P  + D L +A          +
Sbjct: 248 -------FNLPPSYARALCTALEERAPGAKWQ--GIIYPNMLGDDLAQAMARAG--CKAV 296

Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351
            L  + G + +L++ N+R    + R++  R+++   DI  S   ++G PGET +  +   
Sbjct: 297 SLGFEHGDEDMLRTFNKRFGPEKVREVSKRLKA--HDIGQSGFLLLGGPGETKESVKKAF 354

Query: 352 DLVDKIGYA 360
             ++ +   
Sbjct: 355 AFLESLKLD 363


>gi|219851304|ref|YP_002465736.1| Radical SAM domain protein [Methanosphaerula palustris E1-9c]
 gi|219545563|gb|ACL16013.1| Radical SAM domain protein [Methanosphaerula palustris E1-9c]
          Length = 489

 Score = 90.8 bits (224), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 54/297 (18%), Positives = 108/297 (36%), Gaps = 15/297 (5%)

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG-IEISR 205
           + + + D         +   +     K     ++    GC     +C   +  G +  +R
Sbjct: 170 ELIQNLDALPFPARHLVPFNEYKLFDKDATIGYMITSRGCTFASNYCSSSHLMGGMFRAR 229

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           S   VVDE  +L+            +   +        +    D+ + +   +GL     
Sbjct: 230 SPKNVVDEVEELVST-------YHVDTIEFLDDNFMLNRSRAIDIAHEIRS-RGLDISFV 281

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
            +S    ++  L+         +  ++  V+SGS R LK MN+R T       +   +  
Sbjct: 282 ASSRVNAVNRDLLMELKKAG--LSTIYYGVESGSLRTLKLMNKRITLSMAEDAVRIAKDC 339

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN--MLEQVD 383
              I++ + FI+G+PGET +D  AT+    ++    A     +P  GTP         + 
Sbjct: 340 --GISVLTSFIIGYPGETYEDMNATIRFAIRLDPDYAQFTILTPYPGTPIFQELKKNNLL 397

Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440
                +R   L+  +R +        + + ++    +     G L  RS  L++V+ 
Sbjct: 398 ATEDWDRYTVLEPIIRYEAYGLTSRKISRKLKEAYLRFYLRPGYLFRRSGLLKTVLY 454


>gi|254513754|ref|ZP_05125815.1| magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative
           cyclase [gamma proteobacterium NOR5-3]
 gi|219675997|gb|EED32362.1| magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative
           cyclase [gamma proteobacterium NOR5-3]
          Length = 548

 Score = 90.4 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 54/317 (17%), Positives = 106/317 (33%), Gaps = 40/317 (12%)

Query: 96  KEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG--------- 146
           +     L V+ G       +++L  +P V+++V  +    L  ++     G         
Sbjct: 89  EHAPQALRVLGGIHGTFMYKQVLSEAPWVDLIVRGEGEEILCNVVRAVENGSFDSQREQI 148

Query: 147 --------KRVVDTDY--------SVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190
                     +V T          S+E  +  L      Y       A   +  GC   C
Sbjct: 149 EGLAFRRGHEIVATAAAPTIKDLDSIEPDWNMLEWSHYKYIPLGTRVAIPNMARGCPFTC 208

Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDL 250
           +FC           R   +VVDE  KL++       +L               +  F + 
Sbjct: 209 SFCSQWKFWRDYRVRDPIKVVDEIEKLVNEHEVGFFILADEEPTI-------NRKKFIEF 261

Query: 251 LYSLSEIKGLVRLRYTTSHPRDM---SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307
              L       R+++  +         + L+  +    ++  ++ L  ++ +   L   N
Sbjct: 262 CEELIRRDLPKRVKWGINTRVTDILRDEKLLPLYRKAGLV--HVSLGTEAAAQMKLDQFN 319

Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           +     + ++ I  +R    DI I + FIVG   ET +    T  +  +     A    Y
Sbjct: 320 KETKVEDNKRAIQLLREA--DILIEAQFIVGLDNETPETLEETYQMAWEWQPDLANWAMY 377

Query: 368 SPRLGTPGS-NMLEQVD 383
           +P   TP   ++ ++V+
Sbjct: 378 TPWPFTPLFQDLGDKVE 394


>gi|529098|dbj|BAA07117.1| P-methylase [Streptomyces hygroscopicus]
          Length = 550

 Score = 90.4 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 57/263 (21%), Positives = 97/263 (36%), Gaps = 14/263 (5%)

Query: 123 IVNVVVGPQTYYRLPEL-LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRK-RGVTAFL 180
           +V  +V       +P + L  A  G+  +       +     S+    ++    G T   
Sbjct: 190 VVGAIVNGDAPTEVPNVFLRSAATGEWRLTRKRPEANDLNAFSVRWNRFDPTVLGPTLST 249

Query: 181 TIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL 240
                C   C FC  P   G      LS V  E  +L D GV  +  +    N    +  
Sbjct: 250 RTARSCAFSCAFCDYPERAGALTLADLSTVERELEELADLGVKRVAFIDDTFNVPMRRFK 309

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300
           D        L+     I+     R   +   D+ D +       D     + L ++SG D
Sbjct: 310 D----LCRMLVRRDFGIEWFSYFRCGHARDPDVYDLM------YDSGCRGVLLGIESGDD 359

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
           ++L +M++R T   Y+  I+++++    I   + F+VGFPGE+    R T+D ++  G  
Sbjct: 360 QVLLNMDKRATTAHYQNGIEQLKAR--GIFTHASFVVGFPGESPQTVRNTIDFINSAGPD 417

Query: 361 QAFSFKYSPRLGTPGSNMLEQVD 383
                 +     TP      Q D
Sbjct: 418 TFAVNHWYYMQSTPIHVRAPQFD 440


>gi|257468750|ref|ZP_05632844.1| Radical SAM domain protein [Fusobacterium ulcerans ATCC 49185]
 gi|317063004|ref|ZP_07927489.1| radical SAM domain-containing protein [Fusobacterium ulcerans ATCC
           49185]
 gi|313688680|gb|EFS25515.1| radical SAM domain-containing protein [Fusobacterium ulcerans ATCC
           49185]
          Length = 444

 Score = 90.4 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 51/305 (16%), Positives = 105/305 (34%), Gaps = 30/305 (9%)

Query: 88  RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147
           R  + +       +  ++ G  A     E+       + ++         E++E  R GK
Sbjct: 72  RAYEIAENYRNKGVKTLMGGMHAMLIPSEVQ---EYCDSIIVGDAEPVWEEMIEDLRVGK 128

Query: 148 --RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP-YTRGIEIS 204
             +  + +  +  +   ++  D    +       +    GC   C FC    Y +     
Sbjct: 129 LKKKYEGEQPLIPQKNIITRRDIFEGKGYLPITLIQFSRGCRYRCNFCASSAYFKNRHFC 188

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R +  VV E +         I  +  N+ A   K  +  K      +  +S+        
Sbjct: 189 RRVEDVVTEIK---SQKRKLIFFVDDNITADFQKAKELFKALIPLKIKWVSQ-------- 237

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA----YEYRQIID 320
              S      + L++           L +  +S ++  LK+MN+         +Y++ I+
Sbjct: 238 --GSMDMLYDNELMELMVKSG--CLGLVIGFESINEENLKNMNKSSNRQKKFDKYKKEIE 293

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
            +RS    +   + F VG  G+T +  + T +   +  +  A      P  GTP   + E
Sbjct: 294 ILRSW--GLQTWAAFTVGHDGDTMESIQETCNFAIENKFCFAAYNILMPYPGTP---LYE 348

Query: 381 QVDEN 385
           ++ E 
Sbjct: 349 KLKEE 353


>gi|150401860|ref|YP_001325626.1| radical SAM domain-containing protein [Methanococcus aeolicus
           Nankai-3]
 gi|150014563|gb|ABR57014.1| Radical SAM domain protein [Methanococcus aeolicus Nankai-3]
          Length = 517

 Score = 90.4 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 70/485 (14%), Positives = 157/485 (32%), Gaps = 70/485 (14%)

Query: 42  LRMEDMFFSQGYERVNSMDDADLIVLNTCHIREK-----AAEKVYSFLGRIRNLKNSRIK 96
            ++  +  S+G++          ++++ C          A       +  I    N    
Sbjct: 46  DKLRSLIKSKGFDFNKFD-----VIISICGFHTPGKYLNANPATLREIVSILYDFNGLKI 100

Query: 97  EGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSV 156
            GG +       +   + ++  +     +VV        + +L+E     +++ + D + 
Sbjct: 101 LGGPVATKFGSSMEGGKIKDDSKLKYFFDVVAEENLELTIKDLIENKFNLEKINNIDINA 160

Query: 157 EDKFERL-----------SIVDGGYNRKRGVTAFLTIQEGCDK----FCTFCVVPYTRGI 201
            D  +             + +   +     +   +    GC +     C+FC  P   G 
Sbjct: 161 IDNIDNYYKDIKDYAIKGAKIIKQHPNYPYIVNEIETYRGCSRNMSGGCSFCTEPRRFGA 220

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG-------KGLDGEKCTFSDLLYSL 254
              R+   +++E + L   G     +  Q      G               T   L   +
Sbjct: 221 PTYRNPKDIINEVKALSKEGAKYYRIGRQPCMFSYGAKESEQYDVPKPNVETVEKLFKGI 280

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY------LHLPVQSGSDRILKSMNR 308
           S +   V L    ++P  +S   I++      L+ Y          V+S  + ++K  N 
Sbjct: 281 SSVNPEV-LHIDNANPAVISHHPIESREIAKTLVRYCTGGNVAAFGVESFDENVIKKNNL 339

Query: 309 RHTAYEYRQIIDRIRSV--------RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
             T  +       +  V         P +    + + G  GET + F      + +I   
Sbjct: 340 FTTPEDVLNATKLLNEVGGLRSSTGMPYLLPGINLLFGLKGETKETFEINYSYLKEIQND 399

Query: 361 -----QAFSFKYSPRLGTPGSNMLEQVDENVKA-ERLLCLQKKLREQQVS-----FNDAC 409
                +    +  P  GT      +  +++VK  E+   + K  +E+             
Sbjct: 400 NLLIRRINIRQVVPFFGT------DITEKDVKKAEKRKTIFKSFKEKVRKDIDNNMLRKM 453

Query: 410 --VGQIIE-VLIEKHGKEKGKLVGR--SPWLQSVVLNSKNHNIGDIIKVRITDVKISTLY 464
             +G I++ V IE   +++    GR    +   + + +K+  +   + V IT     ++ 
Sbjct: 454 LPIGSILKNVFIE-LKEKENLYFGRQFGSYPLLIGIENKDLKLNSFVDVEITGYGRRSIT 512

Query: 465 GELVV 469
           G  ++
Sbjct: 513 GRAII 517


>gi|262066478|ref|ZP_06026090.1| radical SAM protein [Fusobacterium periodonticum ATCC 33693]
 gi|291379810|gb|EFE87328.1| radical SAM protein [Fusobacterium periodonticum ATCC 33693]
          Length = 434

 Score = 90.4 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 59/325 (18%), Positives = 117/325 (36%), Gaps = 34/325 (10%)

Query: 61  DADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRR 120
           + DL+V+ T              L   R    +       + VV+ G  A    +E+   
Sbjct: 53  EVDLVVITT------------FTLTAKRAYTIADNYRKKGIYVVIGGYHASLIPKEVQEY 100

Query: 121 SPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFL 180
           +  V   VG         L+E      + V  +  + D  E +       +++      +
Sbjct: 101 ADTV--FVGSAEGNWARFLIELENGNPQKVYEEIKLPDISEVVYDRSIFKDKRYSFVVPV 158

Query: 181 TIQEGCDKFCTFCVVPYT-RGIEISRSLSQVVDEARKLID--NGVCEITLLGQNVNAWRG 237
               GC   C FC +    RG    R +  V++E +++         I  +  N+ A   
Sbjct: 159 QFGRGCMHQCEFCTIGSVHRGDYAHRRVELVIEEIKEIFKTNKRAKVIYFVDDNIFA--- 215

Query: 238 KGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM--SDCLIKAHGDLDVLMPYLHLPV 295
                 K     L   L ++K    +++      D+   + L+K   +   +   + L  
Sbjct: 216 -----NKKKALHLFNELKKLK----IKWACQGSIDIAKDEELVKLMSESGCI--EMLLGF 264

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
           ++ +   +K MN++       + I RI      I + + +++G+  +T D F+  +D  +
Sbjct: 265 ENINIMNIKKMNKKSNYDFDYENIIRIFKKY-KILVHASYVIGYDYDTKDYFQEILDFSN 323

Query: 356 KIGYAQAFSFKYSPRLGTPGSNMLE 380
           K  +  A      P  GTP  + L+
Sbjct: 324 KHKFFLAGFNPALPIPGTPFYDRLK 348


>gi|20094428|ref|NP_614275.1| Fe-S oxidoreductase [Methanopyrus kandleri AV19]
 gi|19887512|gb|AAM02205.1| Predicted Fe-S oxidoreductase [Methanopyrus kandleri AV19]
          Length = 483

 Score = 90.4 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 59/319 (18%), Positives = 106/319 (33%), Gaps = 37/319 (11%)

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVV-------------- 128
            + +         +E  D++V + G        E L+  P V+VVV              
Sbjct: 78  IIHQAYQAAKVVKEELEDVIVCLGGYHPTFMDVECLKECPYVDVVVRREGEFTLLDLAKV 137

Query: 129 ---GPQT-------YYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTA 178
              G +T        YR  + + RA     + D D         L +    +   +    
Sbjct: 138 FIDGVKTLSEVLGITYREKDDIVRAPDRPLIRDLDALPFPARHLLPMDKYTFFGAKTTAT 197

Query: 179 FLTIQEGCDKFCTFCVVPYTRG-IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG 237
            +    GC   C FC      G      S  +VV E   + +N        G ++ A+  
Sbjct: 198 TMVSSRGCPVGCDFCASSAMHGHKLRMHSAERVVSEMAHVHEN-------YGSDIIAFVD 250

Query: 238 KGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQS 297
                ++    ++   + E  GL       +    +   L++   +       L   V+S
Sbjct: 251 DTFTYDRRRVEEICRLIVE-SGLDVTWGCAARVDTIDRELLELMREAG--CSVLFFGVES 307

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
           GS  +L ++ +  T  + ++     R    DI   +  ++G PGET    R T+  + +I
Sbjct: 308 GSQEVLDNVGKGFTVEQTKKAFQLCREF--DIVTVASAVIGLPGETHRSARQTIKFLKEI 365

Query: 358 GYAQAFSFKYSPRLGTPGS 376
               A     +P  GT   
Sbjct: 366 DPDYAVVSVATPYPGTKFY 384


>gi|315230154|ref|YP_004070590.1| hypothetical protein TERMP_00390 [Thermococcus barophilus MP]
 gi|315183182|gb|ADT83367.1| hypothetical protein TERMP_00390 [Thermococcus barophilus MP]
          Length = 581

 Score = 90.4 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 81/460 (17%), Positives = 148/460 (32%), Gaps = 48/460 (10%)

Query: 53  YERVNSMDDADLIV----LNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGC 108
           ++    +  ADLIV    L+T      A       + R     N     GG   +  A  
Sbjct: 70  FKVREILSKADLIVYIGGLHTPGKYLSAVPSQVEEVARFLKHFNGTKILGGPAFMGSAHE 129

Query: 109 VAQAEG-EEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERL--SI 165
                   E++    I + +V       L +LL   +         Y     +  L   +
Sbjct: 130 GGTRISSRELMLADQIFDHIVYGDLEAFLYDLLTTPKDADPFRFRTYGELRDYALLGAEV 189

Query: 166 VDGGYNRKRGVTAFLTIQEGCDK-----FCTFCVVPYTRGIEISRSLSQVVDEARKLIDN 220
           V    +    V   +  Q GC K      C+FC  P        R +  +V+E + L D 
Sbjct: 190 VKQFPDYPEFVIVEIETQRGCPKAMGIGGCSFCTEPVRYKRVEDRPIGDIVEEIKVLYDL 249

Query: 221 GVCEITLLGQNVNAWRGKGLDG-----EKCTFSDLLYSLSE-IKGLVRLRYTTSHPRDMS 274
           GV    +  Q+         +G            L   + E    +  L    ++P  ++
Sbjct: 250 GVRHFRVGRQSCIFSYMAEPNGRVPVPNPEAVEKLFKGIREAAPNIKTLHVDNANPAVIA 309

Query: 275 DCLIKAHGDLDVLMPYLH------LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV--- 325
           +   ++      L+ Y          +++   ++ K  N   TA E  + +  +  +   
Sbjct: 310 NYPEESIKIAKALIKYGTPGNVVAFGLETADPKVAKRNNLNTTAEETYEAVKILNEIGAK 369

Query: 326 -----RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR-----LGTPG 375
                 P +    + I G PGET   +  T   + ++        + + R      GTP 
Sbjct: 370 RGYNGMPWLLPGINIIFGLPGETKKSYEITFQFLKRLVDDGLMVRRINIRQVVVFPGTPL 429

Query: 376 SNMLEQVDENVKAERLLCLQKKLR-EQQVSFNDACVGQIIEV---L--IEKHGKEKGKLV 429
             M ++V    K E+   L K  + + +   +   + ++  V   L  +     E G   
Sbjct: 430 WFMKDKV----KTEKHKHLIKHYKYKIRHEIDLPMLKRVAPVGTILRDVRAEVYENGLTY 485

Query: 430 GR-SPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           GR       +V   K   +     V I D    ++ G  +
Sbjct: 486 GRQIGSYPLIVGIPKQIKLNKFYDVLIVDHGFRSITGIPI 525


>gi|116696108|ref|YP_841684.1| hypothetical protein H16_B2172 [Ralstonia eutropha H16]
 gi|113530607|emb|CAJ96954.1| conserved hypothetical protein [Ralstonia eutropha H16]
          Length = 474

 Score = 90.4 bits (223), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 44/195 (22%), Positives = 80/195 (41%), Gaps = 22/195 (11%)

Query: 184 EGCDKFCTFCVVPYTRG--IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD 241
            GC   CTFC+ P T G     +RS   V+ E +            + +N+   +    D
Sbjct: 205 RGCRSRCTFCLWPQTVGGHRYRTRSAESVIAEVK-----------WIKENMPEVKEIMFD 253

Query: 242 GEKCTFSDLLYSLSEIK---GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
            +  TF+D    + EI    G + + ++ +   ++    +K   +    +  L +  +SG
Sbjct: 254 DD--TFTDFKPRVEEIARGLGQLGVTWSCNAKANVPYSTLKIMKE--NGLRLLLVGYESG 309

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
            D+IL ++ +       R+  +  R +   I I   FI+G PGET +    T++   +I 
Sbjct: 310 DDQILLNIKKGLRTDIARRFTEDCRKL--GIQIHGTFILGLPGETRETIEKTIEYAKEIN 367

Query: 359 YAQAFSFKYSPRLGT 373
                    +P  GT
Sbjct: 368 PHTIQVSLAAPYPGT 382


>gi|330507822|ref|YP_004384250.1| B12 binding domain/radical SAM domain fusion protein [Methanosaeta
           concilii GP-6]
 gi|328928630|gb|AEB68432.1| B12 binding domain/radical SAM domain fusion protein [Methanosaeta
           concilii GP-6]
          Length = 583

 Score = 90.4 bits (223), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 69/369 (18%), Positives = 116/369 (31%), Gaps = 45/369 (12%)

Query: 43  RMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG--------RIRNLKNSR 94
            +      +G+E    + DAD+  L+   + + A +     +G        R       +
Sbjct: 12  YIASTLKREGHEV--KVVDADVENLSLATVSKTARDYAPDLIGLTMNTLQSRAAYETVEQ 69

Query: 95  IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV----- 149
           +K   D  V+  G    A   E+L R P ++ VV  +      E+L+    G+ +     
Sbjct: 70  LKRAYDAPVIAGGPHPSALRGEVLERCPSLDAVVYGEGEATTLEILKAFEDGRDLADVEG 129

Query: 150 -----------------VDTDYSVEDKFERLSIV---DGGYNRKRGVTAFLTIQEGCDKF 189
                            VD D       E ++ +    G Y      +  +    GC   
Sbjct: 130 ICYRQGEEILTTEPRCLVDIDSLPHPALELVAPIGRYHGAYPVGARPSLHIMASRGCPFQ 189

Query: 190 CTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFS 248
           CTFC           R +  V+ E   L D   V EI      +N  RG           
Sbjct: 190 CTFCSKGIWERSLRLRKVDSVLAEVEWLRDTFRVKEIFFQDDTLNVNRGWFESLCSGLVE 249

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
             L    + KG  R       P       I            +   V+SG+ R+L S+ +
Sbjct: 250 LGLNKKVKFKGPFRANEKMVDPD------ILKMAKDAGFW-MIFYGVESGNQRVLDSIKK 302

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
             T  E  +     +     I   + F++G  GE+ +  + T+    K+          +
Sbjct: 303 GITLRELERAFQITKKA--GIKTYASFMIGNLGESRETIKDTIRFARKLDPDYYGFAVAT 360

Query: 369 PRLGTPGSN 377
           P  G     
Sbjct: 361 PYPGCEFYE 369


>gi|294783741|ref|ZP_06749065.1| BchE/P-methylase family protein [Fusobacterium sp. 1_1_41FAA]
 gi|294480619|gb|EFG28396.1| BchE/P-methylase family protein [Fusobacterium sp. 1_1_41FAA]
          Length = 434

 Score = 90.4 bits (223), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 60/325 (18%), Positives = 116/325 (35%), Gaps = 34/325 (10%)

Query: 61  DADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRR 120
           + DL+V+ T              L   R    +       + VV+ G  A    EE+   
Sbjct: 53  EVDLVVITT------------FTLTAKRAYTIADNYRKKGIYVVIGGYHASLMPEEVQEY 100

Query: 121 SPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFL 180
           +  V   VG         L+E      + V  +  + D  E +       ++K      +
Sbjct: 101 ADTV--FVGSAEGNWERFLIELENGHPQKVYEEIKLPDISEVVYDRSLFKDKKYSFVVPV 158

Query: 181 TIQEGCDKFCTFCVVPYTR-GIEISRSLSQVVDEARKLI--DNGVCEITLLGQNVNAWRG 237
               GC   C FC +     G    R +  V++E +++   +     I  +  N+ A   
Sbjct: 159 QFGRGCMHQCEFCTIGSVHKGDYTHRKVELVIEEIKEIFRTNKRAKVIYFVDDNIFA--- 215

Query: 238 KGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM--SDCLIKAHGDLDVLMPYLHLPV 295
                 K     L   L ++K    +++      D+   + L+K   +   +   + L  
Sbjct: 216 -----NKKKALHLFNELKKLK----IKWACQGSIDIAKDEDLVKLMSESGCI--EMLLGF 264

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
           ++ +   +K MN++       + I RI      I + + +++G+  +T D F+  +D  +
Sbjct: 265 ENINIMNIKKMNKKSNYDFDYENIIRIFKK-HRILVHASYVIGYDYDTKDYFQEILDFSN 323

Query: 356 KIGYAQAFSFKYSPRLGTPGSNMLE 380
           K  +  A      P  GTP    L+
Sbjct: 324 KHKFFLAGFNPALPIPGTPFYERLK 348


>gi|238026649|ref|YP_002910880.1| Radical SAM domain-containing protein [Burkholderia glumae BGR1]
 gi|237875843|gb|ACR28176.1| Radical SAM domain protein [Burkholderia glumae BGR1]
          Length = 480

 Score = 90.0 bits (222), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 74/344 (21%), Positives = 124/344 (36%), Gaps = 44/344 (12%)

Query: 63  DLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRI--KEGGDLLVVVAGCVAQAEGEEILRR 120
           DL++++T      +      F   ++  K S +    G  + V    C+  +E  + + R
Sbjct: 77  DLVIIHTST---PSFPTDALFAQDLKQRKRSIVIGMVGAKVAVDPHHCLLASEAIDFVCR 133

Query: 121 SPIVNVVVGPQTYYRLPELLE---RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT 177
                            E+L    R   G    +    + +  + L  V   Y R   + 
Sbjct: 134 EEFDYTCRELAEGKPFAEILGLSYRTADGAIEHNGPRPMIEDMDALPFVAPVYQRDLKIR 193

Query: 178 AFLT-----------IQEGCDKFCTFCVVPYTRGIEISR--SLSQVVDEARKLIDNGVCE 224
            +                GC   CTFC+ P T G    R  S+  V+ E +         
Sbjct: 194 NYFIGYLDYPYVSIYTGRGCRSKCTFCLWPQTVGGHRYRVRSVENVLAEVK--------- 244

Query: 225 ITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI-KGLVRLRYTTSH--PRDMSDCLIKAH 281
              +  N+   +    D +  TF+D    + EI +GL RL  + S     ++    +K  
Sbjct: 245 --WIRDNMPEVKEIMFDDD--TFTDFKPRVEEIARGLGRLGVSWSCNAKANVPYSTLKIM 300

Query: 282 GDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPG 341
            D    +  L +  +SG D+IL ++ +       R+  +  R +   I I   FI+G PG
Sbjct: 301 KD--NGLRLLLVGYESGDDQILLNIKKGLRTDIARRFSEDCRKL--GIKIHGTFILGLPG 356

Query: 342 ETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
           ET D  R T+    +I          +P  GT    + EQ  EN
Sbjct: 357 ETKDTIRKTIAYAKEINPHTIQVSLAAPYPGT---KLYEQAVEN 397


>gi|209543460|ref|YP_002275689.1| hopanoid biosynthesis associated radical SAM protein HpnJ
           [Gluconacetobacter diazotrophicus PAl 5]
 gi|209531137|gb|ACI51074.1| hopanoid biosynthesis associated radical SAM protein HpnJ
           [Gluconacetobacter diazotrophicus PAl 5]
          Length = 474

 Score = 90.0 bits (222), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 63/352 (17%), Positives = 123/352 (34%), Gaps = 52/352 (14%)

Query: 49  FSQGYERV-NSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAG 107
              G E +   + + DL++++T      +  +V   L                L + + G
Sbjct: 56  ARMGMEPILEDVRNRDLVIMHTSTPSFASDVRVAQMLKDA----------NPALKIGMVG 105

Query: 108 CVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE------------RARFGKRVVDTDYS 155
                + EE L ++  V+ V   +  + + E+ E            R   G  V + D +
Sbjct: 106 AKVAVQAEESLLKAAPVDFVARNEFDFTIKEIAEGRPFAEVDGISWRNEDGTIVHNRDRA 165

Query: 156 VEDKFERLSIVDGGYNRKRGVTAFLT-----------IQEGCDKFCTFCVVPYTRG--IE 202
           + +  + L  V   Y R   +  +                GC   CTFC+ P T G    
Sbjct: 166 MIENMDSLPFVTEVYKRDLKIEDYFIGYLMHPYISIYTGRGCKSHCTFCLWPQTVGGHRY 225

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLL-YSLSEIKGLV 261
            +RS   V  E R           L  Q     +    D +  T       ++++  G +
Sbjct: 226 RTRSPEHVAAEIR-----------LAKQYFPQVKEFFFDDDTFTDDLPRAEAIAKELGKM 274

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
            + ++ +   ++    ++   +    +  L +  +SG+ +IL ++ +       R+    
Sbjct: 275 GVTWSCNAKANVPRKTLEVLKE--NGLRLLLVGYESGNQQILHNIKKGMRVEVAREFTKN 332

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
              +   I I   FI+G PGET +  + T+    +I          +P  GT
Sbjct: 333 CHEL--GIKIHGTFILGLPGETKETIQETIRFATEINPHTLQVSLAAPYPGT 382


>gi|298530185|ref|ZP_07017587.1| Radical SAM domain protein [Desulfonatronospira thiodismutans
           ASO3-1]
 gi|298509559|gb|EFI33463.1| Radical SAM domain protein [Desulfonatronospira thiodismutans
           ASO3-1]
          Length = 486

 Score = 90.0 bits (222), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 70/431 (16%), Positives = 133/431 (30%), Gaps = 78/431 (18%)

Query: 44  MEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR--------------- 88
           +      +G E       AD++  N    R  + +++   L   R               
Sbjct: 41  LASYLEHRGLE-------ADIVDFNA---RPDSVQRLKDILIHKRPAYIGFSCTTSSFLD 90

Query: 89  --NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVN-VVVG---------------- 129
              L         D+ VV  G    + GEE++ +  +++  VVG                
Sbjct: 91  GIRLARESKTLLPDIRVVFGGVHVSSLGEEMMHQHAVIDYAVVGEGEETLAQLMQNCGHA 150

Query: 130 ---PQTYYRLPELLERARFGKRVV--DTDYSVEDKFERLSIVDGGYNRK-----RGVTAF 179
              P   YR P   E    G+R +  D D      +E+L      Y        +     
Sbjct: 151 PGIPGLIYREPGNREVVFTGRRPLLDDLDELPYPAYEKLEGFPKSYPLPIFNYPKSPNTS 210

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
                GC   C++C     +      S   + +  R  ++       +       +    
Sbjct: 211 AITSRGCPYSCSYCDRSVFQKSYRFNSAEYIYEHMR-YLNQHFKVRHI------NFYDDQ 263

Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
              +      L   L     L            +++ L+K   D       + L ++SG 
Sbjct: 264 FSFKLKRLERLTDMLVNRP-LNMSFNCAVRSEHLTESLLKRLKDAG--CWMISLGIESGD 320

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
             +L ++NR+    +  + +  I+     I +    ++G PGET+     T   +  +  
Sbjct: 321 QDMLHALNRKVNLEKLAERVRLIKKY--GIRVKGLLMIGMPGETEASVEKTRQFLFSLPV 378

Query: 360 AQAFSFKYSPRLGTPGSNMLEQV-DENVKAERLLCLQ----------KKLREQQVSFNDA 408
                 K++P  G P    + +  D      R+ C+           ++L E   SF   
Sbjct: 379 DDFNLTKFTPFPGAPVYRTIREYGDFQEDWSRMDCMHFLFVPQGFTLQRLEELHRSFYRD 438

Query: 409 CVGQIIEVLIE 419
              +   VL++
Sbjct: 439 HF-KRPRVLVD 448


>gi|189501087|ref|YP_001960557.1| Radical SAM domain-containing protein [Chlorobium phaeobacteroides
           BS1]
 gi|189496528|gb|ACE05076.1| Radical SAM domain protein [Chlorobium phaeobacteroides BS1]
          Length = 509

 Score = 90.0 bits (222), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 55/325 (16%), Positives = 115/325 (35%), Gaps = 27/325 (8%)

Query: 57  NSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEE 116
             ++ AD+ +++   +++++A+K+ +                 +L +V  G +  +E E 
Sbjct: 61  KDLEWADMALISAMGVQKESAQKIIARCRAA------------NLTIVAGGPLFTSEPE- 107

Query: 117 ILRRSPIVNVVVGPQTYYRLPELLERARFG-KRVVDTDYSVEDKFERLSIVDGGYNRKRG 175
                P V+  V  +    LP  LE    G  R      +  D            +    
Sbjct: 108 ---CFPEVDHFVLNEAEITLPPFLEDLANGTARKFYRSENYPDIKTSPVPQWELLDMNNY 164

Query: 176 VTAFLTIQEGCDKFCTFCVVPYTRG-IEISRSLSQVVDEARKLIDNGVCEITL-LGQNVN 233
           V   +    GC   C FC V    G    +++  Q++ E   + + G  E    +  N  
Sbjct: 165 VAMAIQFSRGCPYQCDFCNVTALLGHKIRTKTSDQILRELDAIDERGWRESVFFVDDNFI 224

Query: 234 AWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHL 293
           A +      +K     L+   +  K   +     S        L++    +      + +
Sbjct: 225 AHK---AYLKKDLLPKLIEWQASKKTSRKFFTECSINIADDPELMELM--VRAGFNQVFI 279

Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV-RPDIAISSDFIVGFPGETDDDFRATMD 352
            +++  +  L+S  ++H     R +++ I+ + R  + +   FIVGF  +T   F+  ++
Sbjct: 280 GIETPDNSALESCGKQHNTS--RDMLENIKRIQRAGLEVQGGFIVGFDTDTPSTFQQQIE 337

Query: 353 LVDKIGYAQAFSFKYSPRLGTPGSN 377
            +   G   A         GT    
Sbjct: 338 FIQNSGIVTAMVGMLQALPGTKLYE 362


>gi|189499975|ref|YP_001959445.1| Radical SAM domain-containing protein [Chlorobium phaeobacteroides
           BS1]
 gi|189495416|gb|ACE03964.1| Radical SAM domain protein [Chlorobium phaeobacteroides BS1]
          Length = 467

 Score = 90.0 bits (222), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 49/272 (18%), Positives = 96/272 (35%), Gaps = 29/272 (10%)

Query: 108 CVAQAEGEEILRRSPIV--NVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSI 165
           C +   G EI    P +  +V++G        E L+     +R            +    
Sbjct: 137 CTSVVYG-EIESVWPELATDVILGNMKDIYRAETLQSMTSMRR-----------PDFNHA 184

Query: 166 VDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI-EISRSLSQVVDEARKLIDN-GVC 223
           +   Y +K      +   +GC   C FC  P   G     R +  V+DE R   +  G  
Sbjct: 185 LSSKYAKKYSSLIPILATKGCPVGCNFCTTPTIYGKSHRMREIELVLDEMRYHQERVGKK 244

Query: 224 EITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGD 283
            ++       ++    +  +   F+DLL  ++ I     +R+  +   +       A   
Sbjct: 245 NVSF------SFMDDNISFKPKFFTDLLEEMANIG----VRWNANISMNFLHKPEIAELA 294

Query: 284 LDVLMPYLHLPVQSGSDRILKSMNRRHTA-YEYRQIIDRIRSVRPDIAISSDFIVGFPGE 342
                  + +  +S +   LKS+++       Y  ++  +      +AI   F+ GF  +
Sbjct: 295 GRSGCDLMSIGFESLNPETLKSVHKGSNRLGNYETVVSNLHKN--GVAIQGYFMFGFDND 352

Query: 343 TDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
           +++ F+ T D +             +P  GTP
Sbjct: 353 SEESFQLTYDFIMDNQIEFPVFSLVTPFPGTP 384


>gi|326391529|ref|ZP_08213061.1| Radical SAM domain protein [Thermoanaerobacter ethanolicus JW 200]
 gi|325992410|gb|EGD50870.1| Radical SAM domain protein [Thermoanaerobacter ethanolicus JW 200]
          Length = 444

 Score = 90.0 bits (222), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 46/207 (22%), Positives = 83/207 (40%), Gaps = 18/207 (8%)

Query: 178 AFLTIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEAR--KLIDNGVCEITLLGQNVNA 234
           A +    GC   C +C      G     RS   +V E    + +   +C    +  N   
Sbjct: 194 ATILSSRGCPYSCFYCSTTAMWGRNWRGRSAHNIVAEIEYIRSLYPNICTFGFVDDNFLV 253

Query: 235 WRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD-MSDCLIKAHGDLDVLMPYLHL 293
                   +K    +    L  I   + + +  S   + +   L+K        +  + L
Sbjct: 254 --------DKKRAREFAELL--ISKNLDITFGFSARVEHLEYDLLKTLKKAG--LSKIFL 301

Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
            ++SGS RIL+ ++R +T YE  + +  I ++   I +++ F+VG P ET DD   T  L
Sbjct: 302 GIESGSPRILRLLHRNYTPYEVIEKVGYIENL--GIKVTASFMVGIPFETKDDVDETFKL 359

Query: 354 VDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           +  I  ++     ++P  GTP     +
Sbjct: 360 IKNIPASEIQCHIFTPFPGTPCFEKPD 386


>gi|73538726|ref|YP_299093.1| radical SAM family protein [Ralstonia eutropha JMP134]
 gi|72122063|gb|AAZ64249.1| Radical SAM [Ralstonia eutropha JMP134]
          Length = 474

 Score = 90.0 bits (222), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 61/332 (18%), Positives = 117/332 (35%), Gaps = 41/332 (12%)

Query: 63  DLIVLNTCHIREKAAEKVYSFLGRIRN-----LKNSRIKEGGDLLVVVAGCVAQAEGEEI 117
           DL++++T         K    L + +      +  ++        +  +G +     EE 
Sbjct: 71  DLVIVHTSTPSFPTDAKFAEELKKRKPGVMIGMVGAKPAVDPGGTLGASGAIDFVCREEF 130

Query: 118 LRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGV- 176
                 V      +    +  L  R   G    +    + +  + L  V   Y R   + 
Sbjct: 131 DYTCQDVAA---GKPLKDILGLSYRLPDGSLEHNGQRPMIENMDELPFVAPVYKRDLKIE 187

Query: 177 --------TAFLTI--QEGCDKFCTFCVVPYTRG--IEISRSLSQVVDEARKLIDNGVCE 224
                     +++I    GC   CTFC+ P T G     +RS   V+ E +         
Sbjct: 188 NYFIGYLKHPYVSIYTGRGCRSRCTFCLWPQTVGGHRYRTRSAESVIAEVK--------- 238

Query: 225 ITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK---GLVRLRYTTSHPRDMSDCLIKAH 281
              + +N+   +    D +  TF+D    + EI    G + + ++ +   ++    +K  
Sbjct: 239 --WIKENMPEVKEIMFDDD--TFTDFKPRVEEIARGLGKLGVTWSCNAKANVPYSTLKIM 294

Query: 282 GDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPG 341
            +    +  L +  +SG D+IL ++ +       R+  +  R +   I I   FI+G PG
Sbjct: 295 KE--NGLRLLLVGYESGDDQILLNIKKGLRTDIARRFTEDCRKL--GIQIHGTFILGLPG 350

Query: 342 ETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
           ET      T+    +I          +P  GT
Sbjct: 351 ETQQTIEKTIAYAKEINPHTIQVSLAAPYPGT 382


>gi|124027118|ref|YP_001012438.1| Fe-S oxidoreductase [Hyperthermus butylicus DSM 5456]
 gi|123977812|gb|ABM80093.1| predicted Fe-S oxidoreductase [Hyperthermus butylicus DSM 5456]
          Length = 507

 Score = 90.0 bits (222), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 52/302 (17%), Positives = 105/302 (34%), Gaps = 19/302 (6%)

Query: 80  VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPI-VNVVVGPQTYYRLPE 138
                 R+      R      + ++V G  A     E+       V+ V+  +    + +
Sbjct: 122 NRRSFRRLMESPAVRKAREKGVRIIVGGPAAWQWLWELEYWKKWGVDTVIDGEAERVIVD 181

Query: 139 LLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
           ++++A  G+ +   DY      E  SI +    R   V   + I  GC + C FC V   
Sbjct: 182 VVDKALKGEPL--PDYIYVGPGESPSIEEIPVIRGASVNGLVEIMRGCPRGCKFCSVTL- 238

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLL----YSL 254
                   L ++  E      +GV ++    ++V  +   G+         L      + 
Sbjct: 239 -RPLRFIPLEKIKAEIEVNKRHGVRDVIYHSEDVLLYGADGVKPRPEPLLKLHELWYRAT 297

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG--------SDRILKSM 306
                            + +  LI       VL     L V+ G        + +++ + 
Sbjct: 298 DGTLAWSHASLAAVKYAEENYKLISRIMGDYVLRRERFLGVEVGIETLSVNLARKVMPAK 357

Query: 307 NRRHTAYEYRQIIDRIRSVRPD--IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
              + A ++ +I++   ++  D  I  +   I+G PGET DD   T + +D++   ++  
Sbjct: 358 AAPYPAEKWPEIVEDAFAIMHDNWIIPAGTIILGLPGETPDDVMKTAEGLDRLRPYRSLI 417

Query: 365 FK 366
             
Sbjct: 418 VP 419


>gi|301166049|emb|CBW25623.1| conserved hypothetical protein [Bacteriovorax marinus SJ]
          Length = 460

 Score = 90.0 bits (222), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 56/263 (21%), Positives = 101/263 (38%), Gaps = 19/263 (7%)

Query: 132 TYYRLPELLERARFGK--RVVDTDYSVEDKFERLSIVDGGY---NRKRGVTAFLTIQEGC 186
           +     E+L    F K   V+          + L I D      +R       +    GC
Sbjct: 166 SDEERDEILGAVYFNKSGEVIWGKKRPLLNIKDLPIPDFSKFDLDRYTSNGFPVEFSRGC 225

Query: 187 DKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKC 245
              CTFC          ++S  Q+VDE +   DN GV +  ++   +N        G   
Sbjct: 226 VAKCTFCSETNYWVSFRTKSARQIVDEFKYHYDNYGVNQFRIVDSLMN--------GNHR 277

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
              D+   + E K              ++  L+K   D      Y++  ++SGS  +L  
Sbjct: 278 LLEDMCDIILEEKHTFYWHGFCRISNKLTPALLKKMRDAG--CTYINYGIESGSQNVLNL 335

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           M +R+   E  + +   ++   +I + +  ++GFPGET  +F  T+ ++  +       +
Sbjct: 336 MKKRYKLSEILETVKHTKNS--NIEVHAQILIGFPGETWFNFYETLRMLKILRGYFTRIY 393

Query: 366 KYSPRLGTPGSNMLEQVDE-NVK 387
              P   T  + + + +DE NVK
Sbjct: 394 PGIPLSVTRQTYLYDNLDEYNVK 416


>gi|88706675|ref|ZP_01104378.1| magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase
           [Congregibacter litoralis KT71]
 gi|88699171|gb|EAQ96287.1| magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase
           [Congregibacter litoralis KT71]
          Length = 563

 Score = 90.0 bits (222), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 56/329 (17%), Positives = 112/329 (34%), Gaps = 40/329 (12%)

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +     +     +     L V+ G  A    +++L  +P ++++V  +    L +++  A
Sbjct: 77  IYAAERILELAKEHAPQALRVLGGIHATFMYKQVLSEAPWIDLIVRGEGEEILCDVVRAA 136

Query: 144 -----------------RFGKRVVDTDY--------SVEDKFERLSIVDGGYNRKRGVTA 178
                            R G  +V T          S+E  +  L      Y       A
Sbjct: 137 ACGDFEAQRESIKGVAFRRGSEIVATPAAPTIKDLDSIEPDWNMLEWSHYTYIPLGTRVA 196

Query: 179 FLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK 238
              +  GC   C+FC           R   +VVDE  KL++       +L          
Sbjct: 197 IPNMARGCPFTCSFCSQWKFWRDYRVRDPIKVVDEIEKLVNEHDVGFFILADEEPTI--- 253

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM---SDCLIKAHGDLDVLMPYLHLPV 295
                +  F +    L       R+++  +         + L+  +    ++  ++ L  
Sbjct: 254 ----NRKKFIEFCEELIRRGLPDRIKWGINTRVTDILRDEALLPLYRRAGLV--HVSLGT 307

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
           ++ +   L   N+     + ++ I  +R    DI I + FIVG   ET +    T  +  
Sbjct: 308 EAAAQMKLDQFNKETKVEDNKRAIQLLREA--DILIEAQFIVGLDNETPETLEETYQMAW 365

Query: 356 KIGYAQAFSFKYSPRLGTPGS-NMLEQVD 383
           +     A    Y+P   TP   ++ ++V+
Sbjct: 366 EWQPDLANWAMYTPWPFTPLFQDLGDKVE 394


>gi|116753343|ref|YP_842461.1| radical SAM domain-containing protein [Methanosaeta thermophila PT]
 gi|116664794|gb|ABK13821.1| Radical SAM domain protein [Methanosaeta thermophila PT]
          Length = 497

 Score = 90.0 bits (222), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 57/303 (18%), Positives = 117/303 (38%), Gaps = 29/303 (9%)

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
              L N  + +  D ++VV G  A     E+      V+ +   +   + PE+      G
Sbjct: 130 FLRLINHPLIKKHDPVIVVGGNGAW----ELADEDVGVDHIYLGEGESKFPEVCMAILSG 185

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           K             +R+ +     NR   +   + I  GC + C FC  P  R     R 
Sbjct: 186 KNPPRIIEGTPVAGDRIPV-----NRGATIAGIVEIGRGCWRGCAFCS-PTMRS-LRHRP 238

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI-KGLVRLRY 265
           +S ++++ R  +  G+ ++ L  ++V  +  +G+  E     +L  S+ E+    + + +
Sbjct: 239 VSSILEDVRVNMREGMRDVLLHSEDVFTYGSRGMRPEPDKVLELFRSVKELSPHTIDVSH 298

Query: 266 TTSHPRDMSDCLIKAHGDL------DVLMPYLHLPVQSGSDRILKSMNRRH----TAYEY 315
            +      S  L++   ++         M    + +++GS R+L+    R     +   +
Sbjct: 299 LSLATVHQSMDLLREISEIVGVGTDQRYMSAW-IGIETGSCRMLEMHMPRKALPESPERW 357

Query: 316 RQIIDRIRSVRP--DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF---KYSPR 370
             I+    ++         +  ++G PGET DD   T +LV+ +            ++P 
Sbjct: 358 PDIVRECYALFHEEHWVPVASLVLGLPGETADDVVRTTELVESLK-DYTGLMLPLFFTPM 416

Query: 371 LGT 373
            GT
Sbjct: 417 AGT 419


>gi|162146542|ref|YP_001601001.1| radical SAM family Fe-S protein [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|161785117|emb|CAP54661.1| Fe-S protein, radical SAM family [Gluconacetobacter diazotrophicus
           PAl 5]
          Length = 477

 Score = 89.6 bits (221), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 63/352 (17%), Positives = 123/352 (34%), Gaps = 52/352 (14%)

Query: 49  FSQGYERV-NSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAG 107
              G E +   + + DL++++T      +  +V   L                L + + G
Sbjct: 59  ARMGMEPILEDVRNRDLVIMHTSTPSFASDVRVAQMLKDA----------NPALKIGMVG 108

Query: 108 CVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE------------RARFGKRVVDTDYS 155
                + EE L ++  V+ V   +  + + E+ E            R   G  V + D +
Sbjct: 109 AKVAVQAEESLLKAAPVDFVARNEFDFTIKEIAEGRPFAEVDGISWRNEDGTIVHNRDRA 168

Query: 156 VEDKFERLSIVDGGYNRKRGVTAFLT-----------IQEGCDKFCTFCVVPYTRG--IE 202
           + +  + L  V   Y R   +  +                GC   CTFC+ P T G    
Sbjct: 169 MIENMDSLPFVTEVYKRDLKIEDYFIGYLMHPYISIYTGRGCKSHCTFCLWPQTVGGHRY 228

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLL-YSLSEIKGLV 261
            +RS   V  E R           L  Q     +    D +  T       ++++  G +
Sbjct: 229 RTRSPEHVAAEIR-----------LAKQYFPQVKEFFFDDDTFTDDLPRAEAIAKELGKM 277

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
            + ++ +   ++    ++   +    +  L +  +SG+ +IL ++ +       R+    
Sbjct: 278 GVTWSCNAKANVPRKTLEVLKE--NGLRLLLVGYESGNQQILHNIKKGMRVEVAREFTKN 335

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
              +   I I   FI+G PGET +  + T+    +I          +P  GT
Sbjct: 336 CHEL--GIKIHGTFILGLPGETKETIQETIRFATEINPHTLQVSLAAPYPGT 385


>gi|66576275|gb|AAM72550.2| BchE/P-methylase family protein [Chlorobium tepidum TLS]
          Length = 456

 Score = 89.6 bits (221), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 51/266 (19%), Positives = 96/266 (36%), Gaps = 22/266 (8%)

Query: 127 VVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGY----NRKRGVTAFLTI 182
           V+  +      EL      GK       S       ++  D  +       +  +  + I
Sbjct: 129 VIYGEIESVWEELAIDIFRGKMKSVYKASNLKPMTTMTPPDFSFALNSPHAKKYSQLIPI 188

Query: 183 --QEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGK 238
              +GC   C+FC  P   G     R +  V+DE R   +  G  ++        ++   
Sbjct: 189 LATKGCPVGCSFCTTPTVYGKSFRYREIDLVLDEMRAHQERLGKKKVRF------SFMDD 242

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
            +      F +LL  ++++     +R+  +   +       A          + +  +S 
Sbjct: 243 NISFRPKYFMELLEGMAKLG----VRWNANISMNFLQKPEVAELAGRSGCELMSIGFESL 298

Query: 299 SDRILKSMNRRHTA-YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
           +  ILKSMN+       Y  ++  +   +  IAI   FI GF  +++  F+AT D + + 
Sbjct: 299 NPDILKSMNKGSNRLQNYEAVVSNLHKHK--IAIQGYFIFGFDDDSEKSFQATYDFIMQN 356

Query: 358 GYAQAFSFKYSPRLGTP-GSNMLEQV 382
                     +P  GTP    M ++V
Sbjct: 357 RIEFPVFSLLTPFPGTPYFEEMKDRV 382


>gi|21674143|ref|NP_662208.1| BchE/P-methylase family protein [Chlorobium tepidum TLS]
          Length = 468

 Score = 89.6 bits (221), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 51/266 (19%), Positives = 96/266 (36%), Gaps = 22/266 (8%)

Query: 127 VVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGY----NRKRGVTAFLTI 182
           V+  +      EL      GK       S       ++  D  +       +  +  + I
Sbjct: 141 VIYGEIESVWEELAIDIFRGKMKSVYKASNLKPMTTMTPPDFSFALNSPHAKKYSQLIPI 200

Query: 183 --QEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGK 238
              +GC   C+FC  P   G     R +  V+DE R   +  G  ++        ++   
Sbjct: 201 LATKGCPVGCSFCTTPTVYGKSFRYREIDLVLDEMRAHQERLGKKKVRF------SFMDD 254

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
            +      F +LL  ++++     +R+  +   +       A          + +  +S 
Sbjct: 255 NISFRPKYFMELLEGMAKLG----VRWNANISMNFLQKPEVAELAGRSGCELMSIGFESL 310

Query: 299 SDRILKSMNRRHTA-YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
           +  ILKSMN+       Y  ++  +   +  IAI   FI GF  +++  F+AT D + + 
Sbjct: 311 NPDILKSMNKGSNRLQNYEAVVSNLHKHK--IAIQGYFIFGFDDDSEKSFQATYDFIMQN 368

Query: 358 GYAQAFSFKYSPRLGTP-GSNMLEQV 382
                     +P  GTP    M ++V
Sbjct: 369 RIEFPVFSLLTPFPGTPYFEEMKDRV 394


>gi|238023830|ref|YP_002908062.1| Radical SAM domain-containing protein [Burkholderia glumae BGR1]
 gi|237878495|gb|ACR30827.1| Radical SAM domain protein [Burkholderia glumae BGR1]
          Length = 473

 Score = 89.6 bits (221), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 74/344 (21%), Positives = 124/344 (36%), Gaps = 44/344 (12%)

Query: 63  DLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRI--KEGGDLLVVVAGCVAQAEGEEILRR 120
           DL++++T      +      F   ++  K S +    G  + V    C+  +E  + + R
Sbjct: 70  DLVIIHTST---PSFPTDALFAQDLKQRKRSIVIGMVGAKVAVDPHHCLLASEAIDFVCR 126

Query: 121 SPIVNVVVGPQTYYRLPELLE---RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT 177
                            E+L    R   G    +    + +  + L  V   Y R   + 
Sbjct: 127 EEFDYTCRELAEGKPFAEILGLSYRTADGAIEHNGPRPMIEDMDALPFVAPVYQRDLKIR 186

Query: 178 AFLT-----------IQEGCDKFCTFCVVPYTRGIEISR--SLSQVVDEARKLIDNGVCE 224
            +                GC   CTFC+ P T G    R  S+  V+ E +         
Sbjct: 187 NYFIGYLDYPYVSIYTGRGCRSKCTFCLWPQTVGGHRYRVRSVENVLAEVK--------- 237

Query: 225 ITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI-KGLVRLRYTTSH--PRDMSDCLIKAH 281
              +  N+   +    D +  TF+D    + EI +GL RL  + S     ++    +K  
Sbjct: 238 --WIRDNMPEVKEIMFDDD--TFTDFKPRVEEIARGLGRLGVSWSCNAKANVPYSTLKIM 293

Query: 282 GDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPG 341
            D    +  L +  +SG D+IL ++ +       R+  +  R +   I I   FI+G PG
Sbjct: 294 KD--NGLRLLLVGYESGDDQILLNIKKGLRTDIARRFSEDCRKL--GIKIHGTFILGLPG 349

Query: 342 ETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
           ET D  R T+    +I          +P  GT    + EQ  EN
Sbjct: 350 ETKDTIRKTIAYAKEINPHTIQVSLAAPYPGT---KLYEQAVEN 390


>gi|254252796|ref|ZP_04946114.1| Fe-S oxidoreductase [Burkholderia dolosa AUO158]
 gi|124895405|gb|EAY69285.1| Fe-S oxidoreductase [Burkholderia dolosa AUO158]
          Length = 480

 Score = 89.6 bits (221), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 61/346 (17%), Positives = 124/346 (35%), Gaps = 51/346 (14%)

Query: 54  ERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAE 113
           E +   +D DL++++T              L +++            +LV + G   Q +
Sbjct: 68  ETLKIANDYDLVIIHTSTPSFPTDALFAQDLKKMK----------PSMLVGMVGAKVQVD 117

Query: 114 GEEILRRSPIVNVVVGPQTYYRLPELLE------------RARFGKRVVDTDYSVEDKFE 161
               L  +  ++ V   +  +   E+ E            RA+ G    +    V +  +
Sbjct: 118 PHNSLTATDAIDFVCREEFDFTCKEIAEGRPLAEIKGLSWRAKDGSIEHNETRPVLEDMD 177

Query: 162 RLSIVDGGYNRKRGV---------TAFLTI--QEGCDKFCTFCVVPYTRGIEISR--SLS 208
            L  V   Y R   +           +++I    GC   CTFC+ P T      R  S+ 
Sbjct: 178 ALPFVAPIYKRDLKIENYFIGYLNYPYVSIYTGRGCKSRCTFCLWPQTVSGHRYRVRSVE 237

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLL-YSLSEIKGLVRLRYTT 267
            V+ E +            +  N+   +    D +  T       +++   G + + ++ 
Sbjct: 238 NVLAEVK-----------WIRDNMPEVKEIMFDDDTFTDDAPRAEAIARGLGKLGVTWSC 286

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
           +   ++    +K   +    +  L +  +SG D+IL ++ +       R+     + +  
Sbjct: 287 NAKANVPYKTLKVMKE--NGLRLLLVGFESGDDQILVNIKKGVRTDFARRFSADCKKL-- 342

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
            I I   FI+G PGET +  + T++   +I          +P  GT
Sbjct: 343 GIKIHGTFILGLPGETKETIKKTIEYAKEINPHTIQVSLAAPYPGT 388


>gi|197119669|ref|YP_002140096.1| radical SAM domain iron-sulfur cluster-binding oxidoreductase with
           cobalamin binding-like domain [Geobacter bemidjiensis
           Bem]
 gi|197089029|gb|ACH40300.1| radical SAM domain iron-sulfur cluster-binding oxidoreductase with
           cobalamin binding-like domain [Geobacter bemidjiensis
           Bem]
          Length = 487

 Score = 89.6 bits (221), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 62/341 (18%), Positives = 111/341 (32%), Gaps = 51/341 (14%)

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +     L  +  +  GD + V+ G  A A  +E L   P  + +V  +    L EL  R
Sbjct: 89  TIESAAELARAVKRRRGDTVTVIGGSHASALPKETLEEFPSFDYLVRGEGELTLAELCLR 148

Query: 143 ARFG-----------------------KRVVDTDYSVEDKFERLSIVDGGYNRKRGVT-- 177
            R G                       + V D D       + L       +  RG +  
Sbjct: 149 LREGGAGQDIRGIAYRSEDGVRVNSSRELVSDLDSLPFPARDLLDYSLRAGHSSRGFSNA 208

Query: 178 ---AFLTIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVCEITLLGQNVN 233
                L    GC   C+FC +  T G     R    + DE  +++        ++  +  
Sbjct: 209 LRSGELFTSRGCPVACSFCAIQATFGRSVRFRDPLFIADELDRMVREQKVNHVVIADDTF 268

Query: 234 AWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHL 293
                         + +   L+     +R     +    ++  L++           +  
Sbjct: 269 TL-------NPERAAVICEILTRSG--IRSWNCDTRVNTVTPELLRLMRRCG--CEKVAF 317

Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA-ISSDFIVGF-PGETDDDFRATM 351
            V+SGS R+L+ M +  T  +    +   R     I  +  +FI+G  P ET +D   T 
Sbjct: 318 GVESGSPRLLELMGKGITVGQVENAVRWAREA--GIRHVEGNFIIGCDPSETREDLEQTR 375

Query: 352 DLVDKIGYAQAFSFKYSPRLGTP------GSNMLEQ-VDEN 385
            L+  + ++        P  GTP       + ++E  V   
Sbjct: 376 RLIRGLPWSFVSVSVVVPYPGTPLREKMLAAGLIEPGVPWE 416


>gi|148265122|ref|YP_001231828.1| radical SAM domain-containing protein [Geobacter uraniireducens
           Rf4]
 gi|146398622|gb|ABQ27255.1| Radical SAM domain protein [Geobacter uraniireducens Rf4]
          Length = 444

 Score = 89.6 bits (221), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 48/288 (16%), Positives = 103/288 (35%), Gaps = 28/288 (9%)

Query: 93  SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG--KRVV 150
           +       + VV+ G    A  EE L      + V   +      ++LE A     K   
Sbjct: 74  ADEFRKRGVKVVMGGIHVTAMPEEALEHC---DAVAIGEAELIWEKILEDAENNCLKPTY 130

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTA-FLTIQEGCDKFCTFC-VVPYTRGIEISRSLS 208
             D   + K  +    D   +R+R +   F+    GC   C FC    +       R + 
Sbjct: 131 KADVYFDMKNMKKPRFDLINHRERYLCYQFVQTTRGCPFNCEFCSATKFWGNKYRYRPID 190

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
           +V++E +    +    + ++  ++ A              +L   L+ +K       + +
Sbjct: 191 EVIEELKTF--DRTQRVFIVDDHIGA--------NPAHAKELFDKLTPLK------MSWA 234

Query: 269 HPRDMSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRR-HTAYEYRQIIDRIRSV 325
               +   L +       +    +L +  +S ++  LK+ N++ +   E+++I++     
Sbjct: 235 SQTGVKTALREGFLKHAAESGCKHLFIGFESINEESLKNSNKKQNDPKEFKKIVEEAHKY 294

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
              I I   F++G   +  D F+     V+++ +         P  GT
Sbjct: 295 --GILIQGAFVIGLDDDKADIFKRLHRFVEEMKFDHIQFNVPYPYPGT 340


>gi|163852869|ref|YP_001640912.1| hopanoid biosynthesis associated radical SAM protein HpnJ
           [Methylobacterium extorquens PA1]
 gi|218531695|ref|YP_002422511.1| hopanoid biosynthesis associated radical SAM protein HpnJ
           [Methylobacterium chloromethanicum CM4]
 gi|240140197|ref|YP_002964674.1| Radical SAM superfamily protein [Methylobacterium extorquens AM1]
 gi|163664474|gb|ABY31841.1| hopanoid biosynthesis associated radical SAM protein HpnJ
           [Methylobacterium extorquens PA1]
 gi|218523998|gb|ACK84583.1| hopanoid biosynthesis associated radical SAM protein HpnJ
           [Methylobacterium chloromethanicum CM4]
 gi|240010171|gb|ACS41397.1| Radical SAM superfamily protein [Methylobacterium extorquens AM1]
          Length = 474

 Score = 89.6 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 70/337 (20%), Positives = 123/337 (36%), Gaps = 33/337 (9%)

Query: 54  ERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAE 113
           E V   +D DL+VL+T     K+  K    L        + +  G  + V  AG +AQA 
Sbjct: 61  EIVAQANDFDLVVLHTSVPSFKSDVKTVEALKAANPRLIAGL-IGAKVAVDAAGSMAQAP 119

Query: 114 GEEILRRSPIVNVVVGPQTYYRLPE---LLERARFGKRVVDTDYSVEDKFERLSIVDGGY 170
             +   R+     V        + E   L  R   G  V + D  +    ++L  V   Y
Sbjct: 120 CIDFCARNEFDFTVKEVADGVPMSEIKGLSYRDANGVVVHNEDREIMTDMDQLPFVTSVY 179

Query: 171 NR------------KRGVTAFLTIQEGCDKFCTFCVVPYTRGIE--ISRSLSQVVDEARK 216
            R            K    +F +   GC   CTFC+ P T G     +RS++ V++E + 
Sbjct: 180 KRDLEMEKYFIGYLKHPYISFYS-GRGCKSRCTFCLWPQTVGGHTYRTRSVAHVIEEIKY 238

Query: 217 LIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDC 276
            +     E     +          +  +         ++   G + + ++ +   ++   
Sbjct: 239 CL----KEFPQTKEFFFDDDTFTDNLPRA------EEIARELGKLGVTWSCNAKANVPYE 288

Query: 277 LIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFI 336
            +K   D    +  L +  +SG+ +IL ++ +        +       +   IAI   FI
Sbjct: 289 TLKVLKD--NGLRLLLVGYESGNQQILNNIKKGMRVEVAEKFTKNCHEL--GIAIHGTFI 344

Query: 337 VGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
           VG PGET +  + T+    +I          +P  GT
Sbjct: 345 VGLPGETKETIQETIAFAKRINPHTIQVSLAAPYPGT 381


>gi|303286519|ref|XP_003062549.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226456066|gb|EEH53368.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 87

 Score = 89.6 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 1/83 (1%)

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
           +++D +    P I I++D I GFPGET++D+  TM L  K  + +    ++ PR GTP +
Sbjct: 1   KVVDTLLERVPGITIATDIICGFPGETEEDWEMTMALCRKYDFIELHLSQFYPRPGTPAA 60

Query: 377 NMLEQVDENVKAERLLCLQKKLR 399
            M ++V+      R   L   + 
Sbjct: 61  RM-KKVNSREVKRRSRELTNYIE 82


>gi|239904938|ref|YP_002951676.1| hypothetical protein DMR_02990 [Desulfovibrio magneticus RS-1]
 gi|239794801|dbj|BAH73790.1| hypothetical protein [Desulfovibrio magneticus RS-1]
          Length = 490

 Score = 89.6 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 50/245 (20%), Positives = 83/245 (33%), Gaps = 29/245 (11%)

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLT-----------IQEGCDKFCTFCV 194
           G  V + D    +  + L  V   Y R   +  +                GC   C+FC+
Sbjct: 169 GVVVHNPDRPFIEDLDALPPVAPVYARHLDIRHYFNPNAKPPMVTLATSRGCPFRCSFCL 228

Query: 195 VPY-TRGI-EISRSLSQVVDEARKLIDN--GVCEITLLGQNVNAWRGKGLDGEKCTFSDL 250
            P    G     RS+ +V+DE    +D+  G+  I      + A        +K      
Sbjct: 229 HPQTLTGRTARCRSIDKVLDEVAWCLDHFPGLRTIFFEDDTLTA--------DKVRCRAF 280

Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
             ++  I+  +   +T +   D+   L+            L +  +S     L +M +  
Sbjct: 281 CQAI--IRRGLVFEWTANARADLDPDLMGLMRRAG--CRQLCVGFESADPTALSAMKKGL 336

Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370
            A   R    R  +    I I   FI GFPG+T +   AT+D    +    A  +     
Sbjct: 337 GAERMR--CFRADAAAAGIKIHGCFIFGFPGDTRESILATIDFALDLNPETAQFYPVMVY 394

Query: 371 LGTPG 375
            GT  
Sbjct: 395 PGTEA 399


>gi|157364573|ref|YP_001471340.1| radical SAM domain-containing protein [Thermotoga lettingae TMO]
 gi|157315177|gb|ABV34276.1| Radical SAM domain protein [Thermotoga lettingae TMO]
          Length = 443

 Score = 89.6 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 61/343 (17%), Positives = 117/343 (34%), Gaps = 49/343 (14%)

Query: 58  SMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEI 117
                D++ ++T  +R   A+++   +                ++ V+ G  A AE E+I
Sbjct: 56  DYSSFDVVGVSTDTVRFPLAKQICQVVK------------SQGVITVMGGPHATAEYEKI 103

Query: 118 LRRSPIVNVVVGPQTYYRLPELLERARFGKRVVD-----------TDYSVEDKFERLSIV 166
           L       VV+G      LP+LLE  +  +R  D                 +  E L ++
Sbjct: 104 LTDGICDYVVLGEGEV-VLPKLLEALKNNERKPDLSGLCYIENGTIVSKKPEFVEDLDLL 162

Query: 167 DGGYNRKRGVTAF-----------LTIQEGCDKFCTFCVVPYTRG-IEISRSLSQVVDEA 214
              +  +   TA+           +    GC   C FC      G     RS+  VV+E 
Sbjct: 163 P--FPDRENFTAYRTMFDKKMATSVITSRGCPFNCEFCSASQFMGMRIRKRSVENVVEEL 220

Query: 215 RKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMS 274
           + L       +     N    + +       T       L E        ++ +      
Sbjct: 221 KILKKMNYGSVIFFDDNFTIDKTR-------TIKLCEQMLKENLNFSWWAFSRADELLGK 273

Query: 275 DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSD 334
           + L++A          L +  +S  D IL+  N++ ++     +   ++  +  I + + 
Sbjct: 274 EDLVEAM--SKAGCKMLFIGFESAEDEILQEYNKKLSSSIAFDVAKLLKKYK--IDLFAS 329

Query: 335 FIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
           FI+G   +T +  + T+    K+G         +P  GT    
Sbjct: 330 FIMGALNDTKESIKKTIKFAKKLGAEIVQFSIMTPYPGTKLYE 372


>gi|302348208|ref|YP_003815846.1| predicted Fe-S oxidoreductase [Acidilobus saccharovorans 345-15]
 gi|302328620|gb|ADL18815.1| predicted Fe-S oxidoreductase [Acidilobus saccharovorans 345-15]
          Length = 498

 Score = 89.6 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 50/306 (16%), Positives = 111/306 (36%), Gaps = 25/306 (8%)

Query: 80  VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAE---GEEILRRSPIVNVVVGPQTYYRL 136
                 R       R  +   + ++V G  A       +E  +    V+ V+  +    +
Sbjct: 116 NRVSFRRFMESPAVREAKRRGVKIIVGGPAAWQWLWSTDEWKKW--GVDTVIDGEADRVV 173

Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKR-GVTAFLTIQEGCDKFCTFCVV 195
            E+++RA  G+ +   DY     ++  +  D     K   V   + I  GC + C FC V
Sbjct: 174 SEVVDRAIKGQEL--PDYIYVGPYDTPATADEIPKIKHASVNGLVEIMRGCPRGCKFCSV 231

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
                      +  V+ E +  +  G   I L  ++V  +   G+         L  ++ 
Sbjct: 232 TL--RPWRFIPVDDVISEIKVNMSEGEKGIILHSEDVLLYYADGIKPRPEGLLKLHTAVR 289

Query: 256 EIK----GLVRLRYTTSHPRDMSDCLIK-----AHGDLDVLMPYLHLPVQSGSDRILKSM 306
           ++     G            + +  LI                 + + +++GS ++ + +
Sbjct: 290 QLTDEPIGWSHASLAAIKYAEDNYKLISKLTEIMFSSEKQRYLGVEVGLETGSVKLARKV 349

Query: 307 N----RRHTAYEYRQIIDRIRSVRP--DIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
                  +   +Y ++++   ++    ++  ++  I+G PGE  DD  AT +LV+K+   
Sbjct: 350 MPAKSAPYPTEKYPEVVEDAFAIMHEHNVIPAATLIIGQPGEEPDDVVATTELVEKLRPY 409

Query: 361 QAFSFK 366
           ++    
Sbjct: 410 RSLIVP 415


>gi|291458495|ref|ZP_06597885.1| molybdopterin converting factor, subunit 1 [Oribacterium sp. oral
           taxon 078 str. F0262]
 gi|291419028|gb|EFE92747.1| molybdopterin converting factor, subunit 1 [Oribacterium sp. oral
           taxon 078 str. F0262]
          Length = 501

 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 48/240 (20%), Positives = 86/240 (35%), Gaps = 17/240 (7%)

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR- 205
           +++ +   + E    RL+  D  +         +    GC   CTFCV P T      R 
Sbjct: 187 EKLDEIPMAAEFIRRRLNYRDYFFPASEYPEIQIFTGRGCPCHCTFCVYPQTMHGHRYRL 246

Query: 206 -SLSQVVDEARKLIDN--GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            S   VV E   + +N   V EI L               ++     +   L E     R
Sbjct: 247 RSPENVVSEFSYIAENFPDVREIVLEDDTFTI--------DRRRVEAICRLLIERGLQKR 298

Query: 263 LRYTT-SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
            R+   +    +    +K           L   ++SG+  IL ++ +  T  +  + I+ 
Sbjct: 299 FRWLCNARVNTLDLDTMKLMKKAG--CRLLIPGIESGNQGILDAIKKGTTLSQVERYIED 356

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
            R     + + + ++VG PGE  +    T+ L  ++    A  F   P  GT    + ++
Sbjct: 357 SRKA--GLLVHACYMVGNPGENRETIEETLRLALRLNTDTAQFFPLIPYPGTEVYRLAKK 414


>gi|283785773|ref|YP_003365638.1| hypothetical protein ROD_20861 [Citrobacter rodentium ICC168]
 gi|282949227|emb|CBG88837.1| conserved hypothetical protein [Citrobacter rodentium ICC168]
          Length = 436

 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 68/333 (20%), Positives = 117/333 (35%), Gaps = 38/333 (11%)

Query: 57  NSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEE 116
             +  ADL+ +    I    A + Y    R R            + VV+ G  A    +E
Sbjct: 48  ERLPGADLVAI---SIETFTARRGYQLADRYRQ---------QGIKVVMGGFHATFMPDE 95

Query: 117 ILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKR-G 175
           + +     + VV         +LL  A  G      + S +   E   +    ++ KR  
Sbjct: 96  VAQ---HADSVVTGDAEGTWEQLLSDAERGTLQPRYEGSRQRGLEDYRLDRSIFSGKRYA 152

Query: 176 VTAFLTIQEGCDKFCTFCVVPYTRGI-EISRSLSQVVDEARKLIDNGVCEITLLGQNVNA 234
             A +    GC   C FC +         +R + Q++ E   L   G   I  +  N+ A
Sbjct: 153 PLALVQYSRGCRFACDFCSIHAFYPDGVRTRPVEQIMAEIDALP--GDRFIAFVDDNLFA 210

Query: 235 WRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP 294
            R K           LL +L  I    R     S      + L+           ++ + 
Sbjct: 211 SRKK--------LESLLEAL--IPLKRRWGCQISIDVARDEALLDRLAQAG--CGFVLMG 258

Query: 295 VQSGSDRILKSMNR--RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352
            +S +   L+ M +   H A +YR++I  + +    I +   FI G+ G+T D  R  + 
Sbjct: 259 FESLNPANLRQMGKQWNHAAGDYRRVIRALHAR--GICVYGTFIFGYDGDTPDTVRQCLA 316

Query: 353 LVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
              +     A      P   TPGS + ++++  
Sbjct: 317 FAQETRLEIANFNLLIP---TPGSALYQRLEAE 346


>gi|218782962|ref|YP_002434280.1| radical SAM domain protein [Desulfatibacillum alkenivorans AK-01]
 gi|218764346|gb|ACL06812.1| Radical SAM domain protein [Desulfatibacillum alkenivorans AK-01]
          Length = 533

 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 54/322 (16%), Positives = 106/322 (32%), Gaps = 35/322 (10%)

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVV---GPQTYYRLPELLER 142
           +   +     +    +  ++ G        E L + P V+ +V   G QT   +  LL +
Sbjct: 78  QAAQIITDVKEIDPSVYTIMGGPHVSFWAHETLEKFPAVDCIVIGEGEQTIEEITPLLAK 137

Query: 143 ARFGKRVVD---------TDYSVEDKFERLSIVDGGYNRKRGVTAF--------LTIQEG 185
               + V            +    D  + L  +         ++ +        +    G
Sbjct: 138 GETLENVTGLILRHNGEIVETGHRDFIQDLDSLPMPARHLLPLSRYKALGFPVSIITSRG 197

Query: 186 CDKFCTFCVVPYTRG-IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK 244
           C   C FC+     G     RS+ +VVDE   L++ G   I +      +         K
Sbjct: 198 CPNKCIFCLGRRMVGHKVRYRSVKKVVDEIETLLELGFTRINVADDLFTS--------NK 249

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304
               ++   + + +GL       S              +       +   ++SG+  +LK
Sbjct: 250 KRVREVCNEI-KNRGLKFGWSAFSRVNTADKETFALMRETG--CDCVSFGIESGNQDMLK 306

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
            + +  T  +  + +   + V   I   + F+VG PGET +    +     K+     + 
Sbjct: 307 RVKKGITLAQAEKAVKICKEV--GILPHASFMVGLPGETHETMADSARFAKKLDAIYGYH 364

Query: 365 FKYSPRLGTPGSNMLEQVDENV 386
           F   P  GT     L++ D  +
Sbjct: 365 FLA-PFPGTTVLENLDEYDLEI 385


>gi|302549803|ref|ZP_07302145.1| p-methyltransferase [Streptomyces viridochromogenes DSM 40736]
 gi|51317960|gb|AAU00085.1| p-methyltransferase [Streptomyces viridochromogenes]
 gi|68697722|emb|CAJ14051.1| P-methyltransferase [Streptomyces viridochromogenes]
 gi|302467421|gb|EFL30514.1| p-methyltransferase [Streptomyces viridochromogenes DSM 40736]
          Length = 549

 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 53/260 (20%), Positives = 97/260 (37%), Gaps = 13/260 (5%)

Query: 123 IVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRK-RGVTAFLT 181
           +V  +V       +P +  R+  G+  +       +     S+    ++    G T    
Sbjct: 190 VVGAIVDGDVPTEVPNVFLRSATGEWKLTRKRPEANDLNACSVRWNRFDPTVLGPTLSTR 249

Query: 182 IQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD 241
               C   C FC  P   G      LS V  E  +L D GV  +  +    N    +  D
Sbjct: 250 TARSCAFSCAFCDYPERAGALTLADLSTVERELEELADMGVKRVAFIDDTFNVPMRRFKD 309

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
                   L+     I+     R   +   D+ D +       D     + L ++SG D+
Sbjct: 310 ----LCRMLVRRDFGIEWFSYFRCGHAREPDVYDLM------YDSGCRGVLLGIESGDDQ 359

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
           +L +M++R T   Y+  I+++++    I   + F++GFPGE+    + T+D +++ G   
Sbjct: 360 VLLNMDKRATTAHYQYGIEQLKAR--GIFTHASFVIGFPGESPQTVQNTIDFINRAGPDT 417

Query: 362 AFSFKYSPRLGTPGSNMLEQ 381
                +     TP      Q
Sbjct: 418 FAVNHWYYMHATPIHVRAPQ 437


>gi|254562634|ref|YP_003069729.1| Radical SAM superfamily protein [Methylobacterium extorquens DM4]
 gi|254269912|emb|CAX25890.1| Radical SAM superfamily protein [Methylobacterium extorquens DM4]
          Length = 474

 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 70/337 (20%), Positives = 123/337 (36%), Gaps = 33/337 (9%)

Query: 54  ERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAE 113
           E V   +D DL+VL+T     K+  K    L        + +  G  + V  AG +AQA 
Sbjct: 61  EIVAQANDFDLVVLHTSVPSFKSDVKTVEALKAANPRLIAGL-IGAKVAVDAAGSMAQAP 119

Query: 114 GEEILRRSPIVNVVVGPQTYYRLPE---LLERARFGKRVVDTDYSVEDKFERLSIVDGGY 170
             +   R+     V        + E   L  R   G  V + D  +    ++L  V   Y
Sbjct: 120 CIDFCARNEFDFTVKEVADGVPMSEIKGLSYRDANGVVVHNEDREIMADMDQLPFVTSVY 179

Query: 171 NR------------KRGVTAFLTIQEGCDKFCTFCVVPYTRGIE--ISRSLSQVVDEARK 216
            R            K    +F +   GC   CTFC+ P T G     +RS++ V++E + 
Sbjct: 180 KRDLEMEKYFIGYLKHPYISFYS-GRGCKSRCTFCLWPQTVGGHTYRTRSVAHVIEEIKY 238

Query: 217 LIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDC 276
            +     E     +          +  +         ++   G + + ++ +   ++   
Sbjct: 239 CL----KEFPQTKEFFFDDDTFTDNLPRA------EEIARELGKLGVTWSCNAKANVPYE 288

Query: 277 LIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFI 336
            +K   D    +  L +  +SG+ +IL ++ +        +       +   IAI   FI
Sbjct: 289 TLKVLKD--NGLRLLLVGYESGNQQILNNIKKGMRVEVAEKFTKNCHEL--GIAIHGTFI 344

Query: 337 VGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
           VG PGET +  + T+    +I          +P  GT
Sbjct: 345 VGLPGETKETIQETIAFAKRINPHTIQVSLAAPYPGT 381


>gi|330816070|ref|YP_004359775.1| Radical SAM domain protein [Burkholderia gladioli BSR3]
 gi|327368463|gb|AEA59819.1| Radical SAM domain protein [Burkholderia gladioli BSR3]
          Length = 480

 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 69/360 (19%), Positives = 127/360 (35%), Gaps = 61/360 (16%)

Query: 54  ERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAE 113
           E     +   L++++T              L +              +L+ + G     +
Sbjct: 71  EIAADYE---LVIIHTSTPSFPTDAAFAQDLKQ----------RNPSVLIGMVGAKVAVD 117

Query: 114 GEEILRRSPIVNVVVGPQTYYRLPELLER------------ARFGKRVVDTDYSVEDKFE 161
               L  S  ++ V   +  Y   ++ ER            A  G    +    + +  +
Sbjct: 118 PHNSLVASNAIDFVCREEFDYTCRDVAERKPFADILGLSYRAADGAIEHNGARPMIEDMD 177

Query: 162 RLSIVDGGYNRKRGV---------TAFLTI--QEGCDKFCTFCVVPYTRGIEISR--SLS 208
            L  V   Y R   +           +++I    GC   CTFC+ P T G    R  S+ 
Sbjct: 178 ALPFVAPVYQRDLKIDNYFIGYLNYPYVSIYTGRGCRSKCTFCLWPQTVGGHRYRVRSVE 237

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK---GLVRLRY 265
            V+ E +            +  N+   +    D +  TF+D    + EI    G + + +
Sbjct: 238 NVLAEVK-----------WIRDNMPEVKEIMFDDD--TFTDFKPRVEEIARGLGKLGVTW 284

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
           + +   ++    +K   +    +  L +  +SG D+IL ++ +       R+  +  R +
Sbjct: 285 SCNAKANVPYATLKIMKE--NGLRLLLVGYESGDDQILLNIKKGLRTDIARRFNEDCRKL 342

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
              I I   FI+G PGET D  R T++   +I          +P  GT    + EQ  EN
Sbjct: 343 --GIKIHGTFILGLPGETRDTIRKTIEYAKEINPHTIQVSLAAPYPGT---RLYEQAIEN 397


>gi|307253300|ref|ZP_07535174.1| Ribosomal protein S12 methylthiotransferase rimO [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306859287|gb|EFM91326.1| Ribosomal protein S12 methylthiotransferase rimO [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
          Length = 97

 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 43/95 (45%), Gaps = 6/95 (6%)

Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPW 434
            M +QV E+VK ER     +  +    +     VG+ + V+I++  +E   G+ +  +P 
Sbjct: 1   EMADQVSEDVKEERFHRFMQVQQRISAARLQQKVGKTLAVIIDEIDEEGIIGRSMADAPE 60

Query: 435 LQSVVLNSK----NHNIGDIIKVRITDVKISTLYG 465
           +  VV           +G +I V IT+     L+G
Sbjct: 61  IDGVVYVDNLSEQEVKVGQVISVSITNADEYDLWG 95


>gi|213622044|ref|ZP_03374827.1| hypothetical protein SentesTyp_32781 [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
          Length = 87

 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 9/85 (10%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           +    S GC  N+ DS R+     ++GY+ V   DDAD++++NTC   + A ++    +G
Sbjct: 9   KIGFVSLGCPKNLVDSERILTELRTEGYDVVPHYDDADMVIVNTCGFIDSAVQESLEAIG 68

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVA 110
                         +  V+V GC+ 
Sbjct: 69  EA---------LNENGKVIVTGCLG 84


>gi|194292679|ref|YP_002008586.1| oxidoreductase [Cupriavidus taiwanensis LMG 19424]
 gi|193226583|emb|CAQ72534.1| putative oxidoreductase, Radical SAM; similar to Anaerobic
           Mg-protoporphyrin IX monomethyl ester oxidative cyclase
           [Cupriavidus taiwanensis LMG 19424]
          Length = 474

 Score = 88.9 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 44/195 (22%), Positives = 81/195 (41%), Gaps = 22/195 (11%)

Query: 184 EGCDKFCTFCVVPYTRG--IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD 241
            GC   CTFC+ P T G     +RS + V+ E +            + +N+   +    D
Sbjct: 205 RGCRSRCTFCLWPQTVGGHRYRTRSAASVIAEVK-----------WIKENMPEVKEIMFD 253

Query: 242 GEKCTFSDLLYSLSEIK---GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
            +  TF+D    + EI    G + + ++ +   ++    +K   +    +  L +  +SG
Sbjct: 254 DD--TFTDFKPRVEEIARGLGQLGVTWSCNAKANVPYSTLKIMKE--NGLRLLLVGYESG 309

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
            D+IL ++ +       R+  +  R +   I I   FI+G PGET +    T++   +I 
Sbjct: 310 DDQILLNIKKGLRTDIARRFTEDCRKL--GIQIHGTFILGLPGETRETIEKTIEYAKEIN 367

Query: 359 YAQAFSFKYSPRLGT 373
                    +P  GT
Sbjct: 368 PHTIQVSLAAPYPGT 382


>gi|254473988|ref|ZP_05087381.1| hypothetical protein PJE062_1901 [Pseudovibrio sp. JE062]
 gi|211956877|gb|EEA92084.1| hypothetical protein PJE062_1901 [Pseudovibrio sp. JE062]
          Length = 612

 Score = 88.9 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 43/286 (15%), Positives = 101/286 (35%), Gaps = 16/286 (5%)

Query: 94  RIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTD 153
           ++  GG  +      + +   + +  ++  ++   G     RL E+L+ A  G      +
Sbjct: 129 QVCIGGFHISGCVSMLPEIPQQIVDAQNEGISFFAGEAENQRLDEVLDDALHGTLKPLYN 188

Query: 154 YSVE----DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI-EISRSLS 208
           +  +    D      +      R  G  +   +  GC   C+FC +   +G    SRS  
Sbjct: 189 FMNDLPNLDSQPDPILPQKHIIRTAGSHSSFDLGRGCPYQCSFCTIINVQGRKSRSRSAD 248

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
            V    R+    G+    +   N    +            D +  L +  G   +++   
Sbjct: 249 DVERIIRRNYAQGINRFFITDDNFARNKDWEA------LFDRIIDLRQNHG-FNIKFIIQ 301

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS-DRILKSMNRRHTAYEYRQIIDRIRSVRP 327
                              +  + + +++ + D +L +  R++   EYR+++   R+   
Sbjct: 302 VDTLCHRIDRFIEKACAAGVTRVFIGLENINPDNLLAAKKRQNKITEYREMLQEWRAY-- 359

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLV-DKIGYAQAFSFKYSPRLG 372
                + +I+GFP +T +     ++++  ++       F  +P  G
Sbjct: 360 GATTYAGYILGFPSDTRESILRDIEIIKKELPLDLLEFFYLTPLPG 405


>gi|327311291|ref|YP_004338188.1| Radical SAM domain-containing protein [Thermoproteus uzoniensis
           768-20]
 gi|326947770|gb|AEA12876.1| Radical SAM domain protein [Thermoproteus uzoniensis 768-20]
          Length = 544

 Score = 88.9 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 64/300 (21%), Positives = 109/300 (36%), Gaps = 28/300 (9%)

Query: 93  SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDT 152
            R+K      VVV G   +        R    +VV        LP+ L +   G+ V   
Sbjct: 137 ERLKAKYGFKVVVGGPGVEQLMRAGRPRW--ADVVFIDDVEVTLPKWLPKILAGEEVPPV 194

Query: 153 DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVD 212
                D++     +    N  R     + I  GC + C FC V        S  +S VV 
Sbjct: 195 IRPGVDEYPAAEDIPAIVNPAR--LGEVQITRGCPRGCQFCSVTPVT--FRSIPISTVVR 250

Query: 213 EARKLIDNGVCEITLLGQNV----NAWRGKG-LDGEKCTFSDLLYSL--SEIKGLVRLRY 265
           E    +  G  ++ L+  ++     +  G   L         L  ++   E+ G      
Sbjct: 251 EVEVNLRAGWTQVDLITDDLLLYGTSPYGPNRLKVNHDAIVKLYEAIKSVEVDGRKVRHI 310

Query: 266 TTSH----PRDMSDCLIKAHGDLDVLMPYLH----LPVQSGSDRILKSMNR----RHTAY 313
             SH    P   S   +KA  +L  L P       + +++GS RIL    R     +   
Sbjct: 311 FFSHVSAAPVVESPRTVKAVAELGGLGPDKGDTPVIGLETGSIRILNKYMRNKAYPYPPE 370

Query: 314 EYRQIIDRIRSVRPD--IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
           ++  ++    ++  +  I  +    +G+P ET++D R T+++V+KI     F     P  
Sbjct: 371 KWHDVVLEATAILNENYIYPAYTMTIGYPDETEEDIRQTLEIVEKI-VDHDFVAWVFPLP 429


>gi|58698370|ref|ZP_00373284.1| MiaB-like tRNA modifying enzyme [Wolbachia endosymbiont of
           Drosophila ananassae]
 gi|58535124|gb|EAL59209.1| MiaB-like tRNA modifying enzyme [Wolbachia endosymbiont of
           Drosophila ananassae]
          Length = 151

 Score = 88.9 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 37/163 (22%), Positives = 71/163 (43%), Gaps = 27/163 (16%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V ++GC++N Y+S  +++       E        +++V+++C +  +A  +V   + +I 
Sbjct: 4   VITFGCRLNFYESELIKEALKKAKRE--------NVVVVHSCAVTNEAERQVKQKIRKI- 54

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
                  K   +  ++V GC  Q +  E+    P V+ V+G Q   +    L        
Sbjct: 55  ------YKNDPNKEIIVVGCAVQLDP-EVYSSIPGVSKVLGNQDKLKAENYLLN------ 101

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCT 191
             D    V D      +++G  ++ R   AF+ IQ GC+  CT
Sbjct: 102 --DDKILVSDNQVEPVLINGFEDKSR---AFIEIQNGCNHSCT 139


>gi|330820832|ref|YP_004349694.1| Radical SAM domain protein [Burkholderia gladioli BSR3]
 gi|327372827|gb|AEA64182.1| Radical SAM domain protein [Burkholderia gladioli BSR3]
          Length = 473

 Score = 88.9 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 69/360 (19%), Positives = 127/360 (35%), Gaps = 61/360 (16%)

Query: 54  ERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAE 113
           E     +   L++++T              L +              +L+ + G     +
Sbjct: 64  EIAADYE---LVIIHTSTPSFPTDAAFAQDLKQ----------RNPSVLIGMVGAKVAVD 110

Query: 114 GEEILRRSPIVNVVVGPQTYYRLPELLER------------ARFGKRVVDTDYSVEDKFE 161
               L  S  ++ V   +  Y   ++ ER            A  G    +    + +  +
Sbjct: 111 PHNSLVASNAIDFVCREEFDYTCRDVAERKPFADILGLSYRAADGAIEHNGARPMIEDMD 170

Query: 162 RLSIVDGGYNRKRGV---------TAFLTI--QEGCDKFCTFCVVPYTRGIEISR--SLS 208
            L  V   Y R   +           +++I    GC   CTFC+ P T G    R  S+ 
Sbjct: 171 ALPFVAPVYQRDLKIDNYFIGYLNYPYVSIYTGRGCRSKCTFCLWPQTVGGHRYRVRSVE 230

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK---GLVRLRY 265
            V+ E +            +  N+   +    D +  TF+D    + EI    G + + +
Sbjct: 231 NVLAEVK-----------WIRDNMPEVKEIMFDDD--TFTDFKPRVEEIARGLGKLGVTW 277

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
           + +   ++    +K   +    +  L +  +SG D+IL ++ +       R+  +  R +
Sbjct: 278 SCNAKANVPYATLKIMKE--NGLRLLLVGYESGDDQILLNIKKGLRTDIARRFNEDCRKL 335

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
              I I   FI+G PGET D  R T++   +I          +P  GT    + EQ  EN
Sbjct: 336 --GIKIHGTFILGLPGETRDTIRKTIEYAKEINPHTIQVSLAAPYPGT---RLYEQAIEN 390


>gi|91203587|emb|CAJ71240.1| conserved hypothetical protein [Candidatus Kuenenia
           stuttgartiensis]
          Length = 455

 Score = 88.9 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 50/331 (15%), Positives = 108/331 (32%), Gaps = 34/331 (10%)

Query: 60  DDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILR 119
           ++ADL+          A     + + R   +  +R+       VV+ G       +E L+
Sbjct: 55  EEADLV----------AITAFTTTISRAYEI--ARMYRERKTKVVMGGIHVSMLPDEALQ 102

Query: 120 RSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAF 179
                + V+  +       ++      +          D     +               
Sbjct: 103 ---YADAVLIGEAEGIWERVINDFENNRLSSKYVGVQMDLTTFKTTPRHDLLHPDYFWHS 159

Query: 180 LTIQEGCDKFCTFCVV-PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK 238
           +    GC   C FC V  +       R   ++++E  ++       IT +  N+  +  +
Sbjct: 160 VQTSRGCPFNCYFCSVSKHLGKAYRQRKPQEILNELEEI---KGKYITFVDDNLIGYTTE 216

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
                K    +L   + + K   R    TS      + +I+          Y+ +  ++ 
Sbjct: 217 S----KARAMELFKGMIQRKLHKRWWMQTSINAADDERVIELAAQSG--CLYVFIGFETI 270

Query: 299 SDRILKSMNRRHT----AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           S  +LK M +          Y++++DR       I +   FI+G   E+   ++   D +
Sbjct: 271 SQGMLKDMKKGINLKIGVENYKKVVDRFHKY--GIGVLGAFIIGNDNESSLYYKKLADFL 328

Query: 355 DKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            + G         +P  GT    +++Q+   
Sbjct: 329 VQSGIDIVQITLLTPLPGT---QLMDQLRGE 356


>gi|258541612|ref|YP_003187045.1| radical S-adenosylmethionine (SAM) protein [Acetobacter
           pasteurianus IFO 3283-01]
 gi|256632690|dbj|BAH98665.1| radical S-adenosylmethionine (SAM) protein [Acetobacter
           pasteurianus IFO 3283-01]
 gi|256635747|dbj|BAI01716.1| radical S-adenosylmethionine (SAM) protein [Acetobacter
           pasteurianus IFO 3283-03]
 gi|256638802|dbj|BAI04764.1| radical S-adenosylmethionine (SAM) protein [Acetobacter
           pasteurianus IFO 3283-07]
 gi|256641856|dbj|BAI07811.1| radical S-adenosylmethionine (SAM) protein [Acetobacter
           pasteurianus IFO 3283-22]
 gi|256644911|dbj|BAI10859.1| radical S-adenosylmethionine (SAM) protein [Acetobacter
           pasteurianus IFO 3283-26]
 gi|256647966|dbj|BAI13907.1| radical S-adenosylmethionine (SAM) protein [Acetobacter
           pasteurianus IFO 3283-32]
 gi|256651019|dbj|BAI16953.1| radical S-adenosylmethionine (SAM) protein [Acetobacter
           pasteurianus IFO 3283-01-42C]
 gi|256654010|dbj|BAI19937.1| radical S-adenosylmethionine (SAM) protein [Acetobacter
           pasteurianus IFO 3283-12]
          Length = 447

 Score = 88.9 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 57/305 (18%), Positives = 108/305 (35%), Gaps = 24/305 (7%)

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            L   R    ++      + V++ G       EE    +  V+ V   +      E+LE 
Sbjct: 75  TLHSYRAYDIAKEFRKRGVKVIMGGPHVYFNAEE---AAEHVDAVGVGEAEPIWKEMLED 131

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTI----QEGCDKFCTFCVVP-Y 197
           A   +       +   +   L          +    F T       GC   C FC    Y
Sbjct: 132 AAANRLKSIYRATPLKELNGLPAPRYDLLDLKKFGPFRTFAVQSSRGCPFVCDFCSERFY 191

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257
             G    R + ++V+E + + + G             +      G+K    +L+  L  +
Sbjct: 192 LGGRYRWRPVDEMVNELKLIKNRGSHFF---------FGESNFGGKKSRAMELMEGLVPL 242

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY-EYR 316
              +R     S    +    +       V+  ++++ ++S    IL  M +       Y 
Sbjct: 243 G--IRWSTLWSSNLCLDKEFLDLARKSGVM--HVNIGIESIDKDILDGMRKGWNKASRYH 298

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
           ++ + +R    DI+ S +FI GF  E  D +RAT+  +++     A+    +P  GT   
Sbjct: 299 EMFENLRQR--DISYSLNFIFGFDDEDHDIYRATISFLEEHKVPAAYFNILTPTKGTALF 356

Query: 377 NMLEQ 381
           N +E+
Sbjct: 357 NRMEK 361


>gi|329115190|ref|ZP_08243945.1| Putative methyltransferase [Acetobacter pomorum DM001]
 gi|326695633|gb|EGE47319.1| Putative methyltransferase [Acetobacter pomorum DM001]
          Length = 489

 Score = 88.9 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 56/305 (18%), Positives = 108/305 (35%), Gaps = 24/305 (7%)

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            L   R    ++      + V++ G       EE    +  V+ V   +      E+L+ 
Sbjct: 117 TLHSYRAYDIAKEFRKRGVKVIMGGPHVYFNAEE---AAEHVDAVGVGEAEPIWKEMLDD 173

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTI----QEGCDKFCTFCVVP-Y 197
           A   +       +   +   L          +    F T       GC   C FC    Y
Sbjct: 174 AAANRLKSIYRATPLKELNGLPAPRYDLLDLQKFGPFRTFAVQSSRGCPFVCDFCSERFY 233

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257
             G    R + ++V+E + + + G             +      G+K    +L+  L  +
Sbjct: 234 LGGRYRWRPVDEMVNELKLIKNRGSHFF---------FGESNFGGKKSRAMELMEGLVPL 284

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY-EYR 316
              +R     S    +    +       V+  ++++ ++S    IL  M +       Y 
Sbjct: 285 G--IRWSTLWSSNLCLDKEFLDLARKSGVM--HVNIGIESIDKDILDGMRKGWNKASRYH 340

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
           ++ + +R    DI+ S +FI GF  E  D +RAT+  +++     A+    +P  GT   
Sbjct: 341 EMFENLRQR--DISYSLNFIFGFDDEDHDIYRATISFLEEHKVPAAYFNILTPTKGTALF 398

Query: 377 NMLEQ 381
           N +E+
Sbjct: 399 NRMEK 403


>gi|224370805|ref|YP_002604969.1| putative Fe-S oxidoreductase family protein [Desulfobacterium
           autotrophicum HRM2]
 gi|223693522|gb|ACN16805.1| putative Fe-S oxidoreductase family protein [Desulfobacterium
           autotrophicum HRM2]
          Length = 560

 Score = 88.9 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 55/305 (18%), Positives = 96/305 (31%), Gaps = 41/305 (13%)

Query: 99  GDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF------------- 145
            ++LVV  G  A    + +    P ++ VV  +      EL E  +              
Sbjct: 92  PEILVVFGGPCATFLCDHLFSLCPELDYVVKGEGEITFLELAEHLQRDEKHPAAMVQGLA 151

Query: 146 -----GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
                GK V   +    +  + L I    ++ +      +++  GC   CTFC  P    
Sbjct: 152 HRGGLGKIVHTPERRPIEDLDSLPIPGRYFDFQ-----HVSLSRGCPGHCTFCGSPRFWP 206

Query: 201 --IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258
                  S    V +   L   G+    +               +K     +   + E +
Sbjct: 207 GARVRFHSPEWFVAQLSLLEKRGINHFFVSDDTFTM--------DKTRVIKVCRIIIEQE 258

Query: 259 -GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
             +  +  +     D    L             +   V+SGS  I K + +        +
Sbjct: 259 LPITWVAISRVDFIDSEILLWMRRAG----CTQISFGVESGSADIRKRLGKPMDRERIVK 314

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS- 376
                 S    I   + FI G PGETD   R ++DL+ +I    A  +      GT    
Sbjct: 315 AFALTVSY--GIMPRAYFIYGSPGETDKTIRESLDLIMEIRPLSAIFYLLVLFPGTHLYQ 372

Query: 377 NMLEQ 381
            +++Q
Sbjct: 373 RLVDQ 377


>gi|188582893|ref|YP_001926338.1| hopanoid biosynthesis associated radical SAM protein HpnJ
           [Methylobacterium populi BJ001]
 gi|179346391|gb|ACB81803.1| hopanoid biosynthesis associated radical SAM protein HpnJ
           [Methylobacterium populi BJ001]
          Length = 474

 Score = 88.9 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 71/337 (21%), Positives = 124/337 (36%), Gaps = 33/337 (9%)

Query: 54  ERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAE 113
           E V   +D DL+VL+T     K+  K    L +  N K      G  + V  AG +AQA 
Sbjct: 61  EIVAQANDFDLVVLHTSVPSFKSDVKTVEAL-KAANPKLIAGLIGAKVAVDAAGSMAQAP 119

Query: 114 GEEILRRSPIVNVVVGPQTYYRLPE---LLERARFGKRVVDTDYSVEDKFERLSIVDGGY 170
             +   R+     V        + E   L  R   G  V + D  +    ++L  V   Y
Sbjct: 120 CIDFCARNEFDFTVKEVAEGVPMSEIKGLSYRDANGVVVHNEDREIMTDMDQLPFVTSVY 179

Query: 171 NR------------KRGVTAFLTIQEGCDKFCTFCVVPYTRGIE--ISRSLSQVVDEARK 216
            R            K    +F +   GC   CTFC+ P T G     +RS++ V++E + 
Sbjct: 180 KRDLEMEKYFIGYLKHPYISFYS-GRGCKSRCTFCLWPQTVGGHTYRTRSVAHVIEEIKY 238

Query: 217 LIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDC 276
                + E     +          +  +         ++   G + + ++ +   ++   
Sbjct: 239 C----MKEFPQTKEFFFDDDTFTDNLPRA------EEIARELGKLGVTWSCNAKANVPRE 288

Query: 277 LIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFI 336
            +K   +    +  L +  +SG+ +IL ++ +        +       +   IAI   FI
Sbjct: 289 TLKVLRE--NGLRLLLVGYESGNQKILNNIKKGMRVEVAEKFTKDCHDL--GIAIHGTFI 344

Query: 337 VGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
           VG PGET +  + T+    +I          +P  GT
Sbjct: 345 VGLPGETKETIQETIAFAKRINPHTIQVSLAAPYPGT 381


>gi|86750971|ref|YP_487467.1| magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative
           cyclase [Rhodopseudomonas palustris HaA2]
 gi|86573999|gb|ABD08556.1| Magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative
           cyclase [Rhodopseudomonas palustris HaA2]
          Length = 580

 Score = 88.9 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 57/388 (14%), Positives = 123/388 (31%), Gaps = 64/388 (16%)

Query: 43  RMEDMFFSQGY----------ERVNSMDDADLI------VLNTCHIREKAAEKVYSFLGR 86
            +     + G+          E  +    A ++      ++    I           + +
Sbjct: 41  YLAGALKANGFTDIKFIDAMTEDTSDEQLAKIVADYQPDLVGATSITPS--------IYK 92

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
                    +    ++ ++ G  A    +++L  +P V+V+V  +    + EL      G
Sbjct: 93  AEEALKVVKQVNPKIVTMLGGVHATFMYQQVLTEAPWVDVIVRGEGEEIVVELARAVASG 152

Query: 147 KRVVDTDY-----------------------------SVEDKFERLSIVDGGYNRKRGVT 177
               + D                              ++   +  L      Y       
Sbjct: 153 NWPANRDAIKGLAYTEGMNGESKIVATPAAPTVKDLDAISPDWGILDWTLYKYIPMNTRV 212

Query: 178 AFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWR 236
           A   +  GC   C+FC           R   +VVDE ++L++   V    L  +     R
Sbjct: 213 AIPNMARGCPFTCSFCSQWKFWRDYRVRDPKKVVDEIQELVEKYQVGFFILADEEPTINR 272

Query: 237 GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQ 296
            K +   +   +  L    +++  +  R T     +    L+K + +  ++  ++ L  +
Sbjct: 273 KKFIQFCEELIARGLNK--KVQWGINTRVTDILRDE---QLLKFYNEAGLM--HVSLGTE 325

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
           + +   L   N+     + ++ I  +R     I   + FIVG   ET +    T  +   
Sbjct: 326 AAAQLKLDLFNKETKIADNKKAIRLLREA--GIVTEAQFIVGLDSETPETLEETYRMAMD 383

Query: 357 IGYAQAFSFKYSPRLGTPGSN-MLEQVD 383
                A    Y+P   TP    + ++V+
Sbjct: 384 WKPDLANWSMYTPWPFTPLFKELSDKVE 411


>gi|118581050|ref|YP_902300.1| magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase
           [Pelobacter propionicus DSM 2379]
 gi|118503760|gb|ABL00243.1| Magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase
           [Pelobacter propionicus DSM 2379]
          Length = 512

 Score = 88.5 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 65/315 (20%), Positives = 117/315 (37%), Gaps = 38/315 (12%)

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
            L +   +   + ++V+ G  A  + +E+L +   V++V+  +    L EL ER R G  
Sbjct: 79  ELAHVARRLDPECVIVMGGGHASFQYDEVLGQGSPVDLVIRGEGEATLLELAERLREGGD 138

Query: 149 ---VVDTDYSVEDKFE------------RLSIVDGGYNRKRGV-----TAFLTIQEGCDK 188
              +    +  +D+ E             L          RGV       F+    GC  
Sbjct: 139 WSGLAGIAFRRDDRVEVTRQRVLLADLDALPFASRYLEHSRGVDIPLQAEFMITARGCPS 198

Query: 189 FCTFCVVP-YTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCT 246
            CTFC  P +       RS   +++E   +    G+   +L      A R + L+  +  
Sbjct: 199 SCTFCSSPGFWMRRVRFRSPENMLEEILFIRQRYGLIYFSLRDDTFTADRRRALEFCRLL 258

Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306
                + L             S    + + L+            + + V+SGS RIL  +
Sbjct: 259 IRSRAHIL---------WNCQSRVTSLDEELLVWMKRAG--CECVQIGVESGSPRILSLL 307

Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
            ++ T  +           +  I++S   I   PGETDDD  A++ L+ +I     +   
Sbjct: 308 GKQITPAQVEAAAAA--VKKVGISLSVYLISSIPGETDDDLDASIALMKRIRPDDGYV-- 363

Query: 367 YSPRLGTPGSNMLEQ 381
            SP    PG+ + ++
Sbjct: 364 -SPLAYFPGTRLFQE 377


>gi|307594548|ref|YP_003900865.1| Radical SAM domain-containing protein [Vulcanisaeta distributa DSM
           14429]
 gi|307549749|gb|ADN49814.1| Radical SAM domain protein [Vulcanisaeta distributa DSM 14429]
          Length = 472

 Score = 88.5 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 65/349 (18%), Positives = 110/349 (31%), Gaps = 46/349 (13%)

Query: 92  NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF------ 145
            +  +   DL V++ G       EE L     V+VVV  +  Y   EL+           
Sbjct: 89  KAIKEYDKDLPVIMGGPHVTFMYEEALSN--NVDVVVRGEGEYTTLELINTMEKYGMDPA 146

Query: 146 ------------GKRVVDT-DYSVEDKFERLSIVDGGYNRKRGVTAF--------LTIQE 184
                       G +V+ T D       + L             T F        +    
Sbjct: 147 HLKSIRGLVFKDGDQVIKTPDRPPIKNLDELPPPARHLLPMDKYTLFGKPIRIVHVMASR 206

Query: 185 GCDKFCTFCVVPYTRGI-EISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDG 242
           GC   C+FC   Y  G     RS   V DE    ++      I          +      
Sbjct: 207 GCPYGCSFCSTSYFWGRIIRYRSAKAVADEIEDTVNTYKTNIIVFTDDEFTLGKRF---- 262

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
                  +   L E++        +   R  +                L+  V+SGS   
Sbjct: 263 -------VYEFLRELEERKLDISFSCGSRVDTIDREMMIALKKHGCTALYFGVESGSQDT 315

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           +  + +R T  +  ++    + ++  I     F++GFP E+ DD + T+    K+    A
Sbjct: 316 INRIGKRITLEQAVRVFQWAKEIK--IDHVGSFVIGFPWESIDDMKNTVKFAMKLNPTYA 373

Query: 363 FSFKYSPRLGTPGS--NMLEQVDENVKAERLLCLQKKLREQQVSFNDAC 409
                +P  GTP     + E + E+   E    L+  +R  + +   A 
Sbjct: 374 QFTVATPYPGTPLYYQALSENLIEDWNWEHWTTLKAVMRGYKFTKEQAQ 422


>gi|223937444|ref|ZP_03629349.1| deoxyribonuclease/rho motif-related TRAM [bacterium Ellin514]
 gi|223893995|gb|EEF60451.1| deoxyribonuclease/rho motif-related TRAM [bacterium Ellin514]
          Length = 94

 Score = 88.5 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 1/90 (1%)

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLVGRSPWLQSVV 439
           Q+ + VK ER   L   + E      D  VG+ +E+L+E   K+   +++GR+   + VV
Sbjct: 1   QLAQEVKEERNARLLSLVNELAGHRYDRYVGEQVEILVEGESKKNSTRMMGRTRTNKIVV 60

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELVV 469
            +    + G ++ V+I      TLYG+  +
Sbjct: 61  FDGSERHRGHLMDVKINRAGSFTLYGDPAI 90


>gi|45659013|ref|YP_003099.1| hypothetical protein LIC13191 [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|45602258|gb|AAS71736.1| conserved hypothetical protein [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 565

 Score = 88.5 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 53/328 (16%), Positives = 116/328 (35%), Gaps = 39/328 (11%)

Query: 92  NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR--- 148
              IK+  ++ V++ G    A   E++  +P V+ ++  +    + + L   +  KR   
Sbjct: 126 AEEIKKVLNVPVLMGGSHVSACP-ELMLSNPYVDFIIRGEGEKAICDFLNEFQNEKRYAL 184

Query: 149 ---------------VVDTDYSVED--KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCT 191
                           +  ++ ++D    +   +    Y  +     F+     C   C+
Sbjct: 185 VGSLGWKESGKMYLNPIGENFPIQDLPPPDLSYLSKIHYLFEGKPMRFIITSRSCPHRCS 244

Query: 192 FCVVPYTRG-IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDL 250
           FC V  T G      ++ +V+ E +K  + G         N+  +        +     L
Sbjct: 245 FCSVHTTFGTKYRRNTVERVLSEIKKSYELGYRVFDFEDDNLTFF--------RPEMKQL 296

Query: 251 LYSLSEIKGLVRLRYTTSHP---RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307
              L +      +R+   +      +   L++   +       L+L + S    + ++  
Sbjct: 297 CEELIDAFPKKDVRFVAMNGISYISLDPELLRLMKEAG--FTNLNLALVSSDKLVRETTK 354

Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           R HT  +Y QI+     +     I+S  I+G P ET +    T+   +        +  +
Sbjct: 355 RPHTVEKYIQIVQEGFKL--GFQITSYQILGLPMETLESMIQTLQF-NAGQPVLMGASLF 411

Query: 368 SPRLGTP-GSNMLEQVDENVKAERLLCL 394
                +P  SN  E+ + ++   RL  +
Sbjct: 412 YLTPNSPIASNFPERNESDIFLARLTSM 439


>gi|83594877|ref|YP_428629.1| magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative
           cyclase [Rhodospirillum rubrum ATCC 11170]
 gi|83577791|gb|ABC24342.1| Magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative
           cyclase [Rhodospirillum rubrum ATCC 11170]
          Length = 535

 Score = 88.5 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 57/371 (15%), Positives = 111/371 (29%), Gaps = 61/371 (16%)

Query: 43  RMEDMFFSQGYE-------RVNS--MDDADLI-------VLNTCHIREKAAEKVYSFLGR 86
            +     + GY          +    ++   I       V+ T  +   A  K    L  
Sbjct: 28  YLAGYLKAGGYSDIRFVDAMTDDMTEEELRAIFAAEQPDVIGTTAVT-PAIYKAERVLEI 86

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
            R        E  + + ++ G  A    +++L  +P ++ VV  +       L+     G
Sbjct: 87  ARE-------ECPNAVTILGGIHATFMFQQVLVEAPWIDTVVRGEGEAVTLNLIRAIDEG 139

Query: 147 K-----------------RVVDTDYSVEDKFERLSIVDGGYNRKRGVT--------AFLT 181
           +                 +VV T      +     I D G    +           A   
Sbjct: 140 RWPADRASIKGIAYLEDTKVVATPAEPPIRDVDSIIPDWGVLEWKKYIYIPLGVPVATPN 199

Query: 182 IQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD 241
           +  GC   C+FC           R   +VVDE   L+        +L             
Sbjct: 200 MARGCPFTCSFCSQWKFWRDYRVRDPKKVVDEIEILVRQHGVGFFILADEEPTI------ 253

Query: 242 GEKCTFSDLLYSLSEIK-GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300
             +  F +    L     G++    T        + L+  +    ++  ++ L  ++ + 
Sbjct: 254 -NRNKFVEFCEELIRRDLGVMWGINTRVTDIMRDEDLLPLYRKAGLI--HISLGTEAAAQ 310

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
             L   ++  T  + ++ I+ +R     I   + FIVG   ET +    T  +       
Sbjct: 311 LNLDIFHKETTVAQNKRAIELLRK--HGIVTEAQFIVGLENETAETLEETYKMCMDWNPD 368

Query: 361 QAFSFKYSPRL 371
            A    ++P  
Sbjct: 369 MANWSMFTPWP 379


>gi|24216693|ref|NP_714174.1| Fe-S oxidoreductase-like protein [Leptospira interrogans serovar
           Lai str. 56601]
 gi|24198038|gb|AAN51192.1| Fe-S oxidoreductase-like protein [Leptospira interrogans serovar
           Lai str. 56601]
          Length = 565

 Score = 88.5 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 53/328 (16%), Positives = 116/328 (35%), Gaps = 39/328 (11%)

Query: 92  NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR--- 148
              IK+  ++ V++ G    A   E++  +P V+ ++  +    + + L   +  KR   
Sbjct: 126 AEEIKKVLNVPVLMGGSHVSACP-ELMLSNPYVDFIIRGEGEKAICDFLNEFQNEKRYAL 184

Query: 149 ---------------VVDTDYSVED--KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCT 191
                           +  ++ ++D    +   +    Y  +     F+     C   C+
Sbjct: 185 VGSLGWKESGKIYLNPIGENFPIQDLPPPDLSYLSKIHYLFEGKPMRFIITSRSCPHRCS 244

Query: 192 FCVVPYTRG-IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDL 250
           FC V  T G      ++ +V+ E +K  + G         N+  +        +     L
Sbjct: 245 FCSVHTTFGTKYRRNTVERVLSEIKKSYELGYRVFDFEDDNLTFF--------RPEMKQL 296

Query: 251 LYSLSEIKGLVRLRYTTSHP---RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307
              L +      +R+   +      +   L++   +       L+L + S    + ++  
Sbjct: 297 CEELIDAFPKKDVRFVAMNGISYISLDPELLRLMKEAG--FTNLNLALVSSDKLVRETTK 354

Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           R HT  +Y QI+     +     I+S  I+G P ET +    T+   +        +  +
Sbjct: 355 RPHTVEKYIQIVQEGFKL--GFQITSYQILGLPMETLESMIQTLQF-NAGQPVLMGASLF 411

Query: 368 SPRLGTP-GSNMLEQVDENVKAERLLCL 394
                +P  SN  E+ + ++   RL  +
Sbjct: 412 YLTPNSPIASNFPERNESDIFLARLTSM 439


>gi|89895596|ref|YP_519083.1| hypothetical protein DSY2850 [Desulfitobacterium hafniense Y51]
 gi|89335044|dbj|BAE84639.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 461

 Score = 88.5 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 57/317 (17%), Positives = 106/317 (33%), Gaps = 35/317 (11%)

Query: 60  DDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILR 119
           +  DL+ +    +    A  VYS   R R L            V + G       EE   
Sbjct: 68  EKVDLVAI---TVNTPNAPHVYSISKRFREL---------GTWVALGGPHVTLNPEEAAC 115

Query: 120 RSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAF 179
                + +   +     PE L+    G              + L I          +T+ 
Sbjct: 116 HG---DTIFVGEAEETWPEFLKDFLSGSMQKAYTSLHVPSLDGLPIPRRDLIVGHRLTSG 172

Query: 180 LTI-QEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG 237
                 GC   C++C +      E  +R + +V+ +   + +           N  A   
Sbjct: 173 AVFASRGCPHNCSYCSLKKIYHNEFRTRPVDEVIKDIGSMPN---KYFVFWDDNFFA--- 226

Query: 238 KGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQS 297
                +      LL  L+ +      + T     D  + L+           YL L ++S
Sbjct: 227 -----DPVYTKALLKDLARLNKRWAAQVTACSCED--EELLSLAKAAG--CLYLFLGLES 277

Query: 298 GSDRILKSMNRRHTA-YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
            S++ L+  N+      EY ++++++   R  I+I +  + GF  +T + F  T+   + 
Sbjct: 278 FSEQGLRDANKNFNKIEEYGKVVNKLH--RHGISIQAGIVFGFDSDTLEVFETTLKACNN 335

Query: 357 IGYAQAFSFKYSPRLGT 373
           IG     +   +P  GT
Sbjct: 336 IGVDGVTASILTPFPGT 352


>gi|6690711|gb|AAF24279.1| BchE [Rhodobacter sphaeroides]
          Length = 611

 Score = 88.5 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 45/209 (21%), Positives = 78/209 (37%), Gaps = 11/209 (5%)

Query: 177 TAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLI-DNGVCEITLLGQNVNAW 235
            A   +  GC   C+FC           R   +VVDE  KL+ ++GV    L  +     
Sbjct: 195 VAIPNMARGCPFTCSFCSQWKFWRDYRVRDPKKVVDEIEKLVNEHGVGFFILADEEPTMN 254

Query: 236 RGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPV 295
           R K ++     F + + +      +     T          L+K +    ++  ++ L  
Sbjct: 255 RKKFIE-----FCEEMIARGLPDKVKWGINTRVTDVKRDKELLKFYRKAGLV--HISLGT 307

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
           ++ +   L   N+  T  E ++ I  +R    DI   + FIVG   ET +    T  +  
Sbjct: 308 EAAAQLKLDVFNKETTVAENKEAIRLLREA--DIFTEAQFIVGLDNETKETLEETYRMAW 365

Query: 356 KIGYAQAFSFKYSPRLGTPGS-NMLEQVD 383
                 A    Y+P   TP    + +QV+
Sbjct: 366 DWQPDLANWSMYTPWPFTPLFQELRDQVE 394


>gi|330834823|ref|YP_004409551.1| radical SAM domain-containing protein [Metallosphaera cuprina Ar-4]
 gi|329566962|gb|AEB95067.1| radical SAM domain-containing protein [Metallosphaera cuprina Ar-4]
          Length = 490

 Score = 88.5 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 61/293 (20%), Positives = 113/293 (38%), Gaps = 28/293 (9%)

Query: 93  SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDT 152
           SR+K+  +  V+  G  A    E    R   ++V+   +   RLPE+++    G+ V   
Sbjct: 99  SRLKKRYNFKVIAGGPGA---WELTKSRPDWLDVLFLGEAEIRLPEVVKSLLKGEPVPPI 155

Query: 153 DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC-VVPYTRGIEISRSLSQVV 211
               + K E++  + G           + +  GC + C+FC + P T     S  L  + 
Sbjct: 156 VKGKDPKAEQIPPILGPTRWGE-----VQVTRGCPRGCSFCSITPET---FRSVPLETIK 207

Query: 212 DEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE--IKGLVRLRYTTSH 269
            E    +  G+  I  +  ++  +    L         L   +    + G+     +   
Sbjct: 208 REVEVNLKGGIKNIDFITDDILLYGSSKLRVNHDALVKLFTEVKRMGVDGIFWPHISAPA 267

Query: 270 PRDMSDCL--IKAHGDLD---VLMPYLHLPVQSGSDRILKSMNR----RHTAYEYRQIID 320
            R+    +  I    + D    +MP   + ++SGS +IL+          T  E+ ++I 
Sbjct: 268 VRESPKTVQAIAEVAEYDFDRSVMP--VVGLESGSLKILEKYMPAKAFPWTPREWGEVII 325

Query: 321 RIRSVRPD--IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
              S+  D  +       +G+  ETDDD + ++DLV KI     F+    P  
Sbjct: 326 DATSIMNDNYVYPCYTMTIGYKEETDDDVQDSIDLVQKI-IDHDFTAWIFPLP 377


>gi|189347592|ref|YP_001944121.1| Radical SAM domain protein [Chlorobium limicola DSM 245]
 gi|189341739|gb|ACD91142.1| Radical SAM domain protein [Chlorobium limicola DSM 245]
          Length = 502

 Score = 88.5 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 59/328 (17%), Positives = 122/328 (37%), Gaps = 33/328 (10%)

Query: 57  NSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEE 116
           + +  AD++ ++   +++++A  + +  G               + VV  G +     E+
Sbjct: 61  DDLAWADMVFISAMGVQQESARDLIARCGEA------------GITVVAGGPLFTTGYEQ 108

Query: 117 ILRRSPIVNVVVGPQTYYRLPELLERARFG---KRVVDTDYSVEDKFERLSIVDGGYNRK 173
                P V+  V  +    LP  LE  + G   KR    ++   D     S      + +
Sbjct: 109 F----PEVDHFVLNEAELTLPLFLEDLKNGCAKKRYATAEFP--DITRTPSPKWELLDMQ 162

Query: 174 RGVTAFLTIQEGCDKFCTFCVVPYTRG-IEISRSLSQVVDEARKLIDNGVCE-ITLLGQN 231
           +  +  +    GC   C FC V    G    +++ +Q++ E  +L   G  + +  +  N
Sbjct: 163 KYASMAIQFSRGCPYQCDFCNVTTLFGHKIRTKTTTQIITELERLRGMGWRDSVFFVDDN 222

Query: 232 VNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT-TSHPRDMSDCLIKAHGDLDVLMPY 290
             A +      +K    +L+    E  G+    YT  S        L+            
Sbjct: 223 FIAHK---SYLKKELLPELIAW-RESNGISTKFYTECSINLADDAELMDLMARAG--FNQ 276

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR-PDIAISSDFIVGFPGETDDDFRA 349
           + + +++  D  L++  ++H     R +++ IR ++   + +   FIVGF  +T   F+ 
Sbjct: 277 VFIGIETPDDNALQACGKQHNRS--RNMLENIRRIQNAGMEVQGGFIVGFDSDTPSIFQK 334

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
            ++ + K G   A         GT    
Sbjct: 335 QIEFIQKSGIVTAMVGVLQALPGTKLYE 362


>gi|223935838|ref|ZP_03627753.1| Radical SAM domain protein [bacterium Ellin514]
 gi|223895439|gb|EEF61885.1| Radical SAM domain protein [bacterium Ellin514]
          Length = 451

 Score = 88.5 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 63/376 (16%), Positives = 131/376 (34%), Gaps = 52/376 (13%)

Query: 3   LFIKLIGVAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDA 62
            +I+   +  + +  +   + P+   ++        YD  RME +            +  
Sbjct: 17  SYIRTWQMEPLPAATL-AGLTPKDVEIR-------FYD-DRMESI---------PYDEPT 58

Query: 63  DLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSP 122
           DL+ L    +    A++ Y      R  K         + VV+ G  A    EE+ R + 
Sbjct: 59  DLVAL---SVETYTAKRAYQIATEYRRRK---------VPVVMGGFHASLCPEEVTRYAE 106

Query: 123 IVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRG-VTAFLT 181
            V  V G +     P++++ AR G        +       L      +  KR      + 
Sbjct: 107 SV--VCG-EAERIWPQVIDDARHGCLQKLYQQTGRPSLSGLRPNRAIFRGKRYLPIGLVE 163

Query: 182 IQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL 240
              GC   C FC V          R + ++++E R  + N       +  N+ +   +  
Sbjct: 164 AGRGCHFKCEFCAVQTVFNSNQTRRPIDEILEEIR-TLKNEKKLFFFVDDNITSNLAEAK 222

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300
           +  +      +  +S+           +H  +  + L+++          + +  +S + 
Sbjct: 223 EFFRALIPLNIRWVSQ------SSINAAHDDEFLELLVRS------GCQGVLIGFESLNP 270

Query: 301 RILKSMNRRHT--AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
             L+ MN+        + Q +  +R  R  + +   F+ G+ G+T + F  T++   +  
Sbjct: 271 ANLRKMNKSFNTMRGGFEQALANLRRHR--VRVYGTFVFGYDGDTPESFGETVEFAQRHA 328

Query: 359 YAQAFSFKYSPRLGTP 374
              A     +P  GTP
Sbjct: 329 LYIAAFNHLTPFPGTP 344


>gi|302812392|ref|XP_002987883.1| hypothetical protein SELMODRAFT_8459 [Selaginella moellendorffii]
 gi|302815858|ref|XP_002989609.1| hypothetical protein SELMODRAFT_8456 [Selaginella moellendorffii]
 gi|302815944|ref|XP_002989652.1| hypothetical protein SELMODRAFT_8455 [Selaginella moellendorffii]
 gi|300142580|gb|EFJ09279.1| hypothetical protein SELMODRAFT_8456 [Selaginella moellendorffii]
 gi|300142623|gb|EFJ09322.1| hypothetical protein SELMODRAFT_8455 [Selaginella moellendorffii]
 gi|300144272|gb|EFJ10957.1| hypothetical protein SELMODRAFT_8459 [Selaginella moellendorffii]
          Length = 91

 Score = 88.5 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 28/85 (32%), Positives = 47/85 (55%), Gaps = 1/85 (1%)

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
           +R+I+D +  + P+I I++D I GFPGET +DF   M+L+ +  + Q    ++ PR GTP
Sbjct: 3   FRKIVDTLTRLVPEIHIATDIICGFPGETSEDFDRIMELIREYTFPQVHISQFYPRPGTP 62

Query: 375 GSNMLEQVDENVKAERLLCLQKKLR 399
            + M ++V      +R   L     
Sbjct: 63  AALM-KRVPTLEVKKRSRSLTSLFE 86


>gi|322418412|ref|YP_004197635.1| cobalamin B12-binding domain-containing protein [Geobacter sp. M18]
 gi|320124799|gb|ADW12359.1| cobalamin B12-binding domain protein [Geobacter sp. M18]
          Length = 470

 Score = 88.5 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 56/334 (16%), Positives = 113/334 (33%), Gaps = 45/334 (13%)

Query: 63  DLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSP 122
           D++ +++   + ++A KV S                    +V+ G  A     E+   +P
Sbjct: 64  DVVGVSSMSFQYESAVKVMSICRACV----------PQAKLVLGGYHATLSYRELTENTP 113

Query: 123 IVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDK--------------FERLSIVDG 168
             + +V  +  +    LLE     +   D       +               ERL + D 
Sbjct: 114 PFDFLVRGEGEHSFAALLEALDGQRTFFDVPGLSWRRNASFIHNPTASLLDLERLPLPDR 173

Query: 169 GYNRKRGVTAF------LTIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNG 221
                   T F      +    GC   CTFC +    G       + +V+ + ++L   G
Sbjct: 174 SVRVLNNFTYFDRKLDCVETSRGCTMTCTFCSITGMYGTSFRCHGIERVIADLKELQRRG 233

Query: 222 VCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE--IKGLVRLRYTTSHPRDMSDCLIK 279
              + L+  N+          +   F+ L  ++ E  + G+  L   +         LI 
Sbjct: 234 TQSVLLVDDNIT--------LDSRRFTSLARAIVEHGLNGMEYLVQASVAGIVADPELIP 285

Query: 280 AHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGF 339
           A  + +  M  + L ++S   + L    +     +  + +  +R     I +   FI+G 
Sbjct: 286 ALAEANFAM--VFLGIESVLPQNLALFQKGDIREKTERAVRLLRE--HGIGVMGGFIIGN 341

Query: 340 PGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
           P +  ++ R       ++G    +    +P  GT
Sbjct: 342 PDDGPEEIREVFRASRRLGIDLPYVQCVTPYPGT 375


>gi|77918729|ref|YP_356544.1| Fe-S oxidoreductase [Pelobacter carbinolicus DSM 2380]
 gi|77544812|gb|ABA88374.1| Fe-S oxidoreductase [Pelobacter carbinolicus DSM 2380]
          Length = 555

 Score = 88.5 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 70/386 (18%), Positives = 130/386 (33%), Gaps = 66/386 (17%)

Query: 46  DMFFSQGYERVNSMDDADLIVL--NT---C----HIREKAAEKVYSFLG----------R 86
            +     Y R ++    D+ +L  NT   C     +RE         +G           
Sbjct: 50  GVLTLASYIRSHASHPVDIHILDLNTVPLCDAPATLREALDRHRPDIVGMSLMFDVSYKH 109

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA--- 143
           + +           +L+++ G  A A   EIL   P ++ +   +    +  L++ A   
Sbjct: 110 VEHTARVIKTFDPSILLILGGASATASYNEILEEQPDIDAICYGEGELAITTLVDAADPW 169

Query: 144 --------------RFGKR-----------VVDTDYSVEDKF-----ERLSIVDGGYNRK 173
                           GK+           V+D DY + D       E  S         
Sbjct: 170 REIEKDPWVTRESLHKGKKPSSRTVDNLNEVIDVDYGLIDIQAYSMKEAFSPFVSAPENA 229

Query: 174 RGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR-SLSQVVDEARKLIDNGVCEITLLGQNV 232
           +    FL    GC   C FC  P   G  +    +  ++     L           G NV
Sbjct: 230 KVQQFFLITSRGCPFKCVFCAEPSFHGKSVRYADVDAIIGHIDMLASR-------YGMNV 282

Query: 233 NAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLH 292
                  L  +K    +L   L+  K  + +         + + L     +    +  ++
Sbjct: 283 LTIYDDQLLLDKRRAKELFRRLAPYKLRIEIP-NGVTAILIDEELAGLMKNAG--VDSIY 339

Query: 293 LPVQSGSDRILK-SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351
           L ++SGS+ +LK  + +     + + I+  +     +I + + FI GFPGET+ D + T+
Sbjct: 340 LAIESGSESVLKNIIKKPIRLDKIQPIVKSLHDA--EIFVQAFFINGFPGETEQDRQKTL 397

Query: 352 DLVDKIGYAQAFSFKYSPRLGTPGSN 377
             + ++G   +     SP  G+    
Sbjct: 398 TFIKQVGIDWSLFNFASPLRGSELYR 423


>gi|325289664|ref|YP_004265845.1| Radical SAM domain protein [Syntrophobotulus glycolicus DSM 8271]
 gi|324965065|gb|ADY55844.1| Radical SAM domain protein [Syntrophobotulus glycolicus DSM 8271]
          Length = 454

 Score = 88.1 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 63/364 (17%), Positives = 120/364 (32%), Gaps = 69/364 (18%)

Query: 95  IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER------------ 142
            +   +  +++ G     + + +L +   V+ V+  +    L  L+E             
Sbjct: 104 KQVCPEAKILLGGVHPTLDPQGVLEQ-ECVDFVIRGEGELALNGLVEALQGRGSFEEIDG 162

Query: 143 --ARFGKRVVDTDYSVEDKFERLSIVD----------GGYNRKRGVTAF-LTIQEGCDKF 189
              R G++ V  D ++ +    + + D                RG+    + I  GC   
Sbjct: 163 LCYREGQQTVIKDKTMIEDGNMIPMPDYDAFPVEQYIRHNQLLRGIRGISMLISRGCPFP 222

Query: 190 CTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS 248
           CTFC V  T G +   ++   +V+E     D    E      ++        +       
Sbjct: 223 CTFCAVHQTMGKKWRIKAPELLVEEIIATRDRYQLEGIWFKDSI-------FNMNPVWTR 275

Query: 249 DLLYSLSEIK-GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307
           +    L E K G+     T        +  +     L      +   ++SGS R L  + 
Sbjct: 276 EFCKLLIEKKAGISWQANTRIDLIKEDELKLMREAGL----TQIDFGIESGSRRSLARLK 331

Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           +  T  + ++ I+  R           F++G PGE + D   T +L   +   ++    Y
Sbjct: 332 KNITIEQIKENINLARQYVKVFGF---FMIGIPGEEESDVLETFELAKDLELDRSTWSIY 388

Query: 368 SPRLGTPGSNMLEQVDEN---------------VKA---------ERLLCLQKKLREQQV 403
           SP  G   S + +++                   KA         ERL  L K++ +   
Sbjct: 389 SPLPG---STLYDELIAEGKIEPYKLDFEQIHFTKAYEGISNIQPERLQELYKEINDYFY 445

Query: 404 SFND 407
             N 
Sbjct: 446 QKNQ 449


>gi|167770806|ref|ZP_02442859.1| hypothetical protein ANACOL_02157 [Anaerotruncus colihominis DSM
           17241]
 gi|167666846|gb|EDS10976.1| hypothetical protein ANACOL_02157 [Anaerotruncus colihominis DSM
           17241]
          Length = 479

 Score = 88.1 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 50/319 (15%), Positives = 116/319 (36%), Gaps = 40/319 (12%)

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL--------- 139
            +  +  K   ++ +++ G  A A  ++++   P ++++V  +  + +PE+         
Sbjct: 90  KVIRAIKKTNPNVKIIIGGTHATALPQQVMEECPEIDILVRGEYDFTIPEIAQGKALAEI 149

Query: 140 --LERARFGKRVVDTDYSVEDKFERLSIV-----------DGGYNRKRGVTAFLTIQEGC 186
             +      + + + D   ++  + L +V           D  Y   +     +    GC
Sbjct: 150 AGISYRNDNEIIHNKDREYQEDLDELPMVSKVYQQFLDVNDYCYAFAQKPMIQIFSARGC 209

Query: 187 DKFCTFCVVPYTRGIE--ISRSLSQVVDEARKLIDN--GVCEITLLGQNVNAWRGKGLDG 242
              C FC  P T G      RS+S +VDE   +      + EI +      A        
Sbjct: 210 PYRCNFCSYPETMGGHQLRRRSVSNLVDELEYIHKQMPEIREIFIEDDTFTA-------- 261

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
           +K    ++   +      ++LR++ +   D+   ++K   +       L +  +SG+  +
Sbjct: 262 DKKRVMEVCDEILRRG--LKLRWSCNTRADLPYAVMKKMKEAG--CRLLVVGFESGNQGV 317

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           L    +     + R   +  + ++  I +   F++G  G++ +    T      I     
Sbjct: 318 LDQTKKGIKLEQSRAFAENTKKLK--IKVFGCFMIGLTGDSLETIEETFQFAKSIYPDMV 375

Query: 363 FSFKYSPRLGTPGSNMLEQ 381
           F  +  P  GT      ++
Sbjct: 376 FFQQAVPFPGTGFYKWAKE 394


>gi|189347017|ref|YP_001943546.1| Radical SAM domain protein [Chlorobium limicola DSM 245]
 gi|189341164|gb|ACD90567.1| Radical SAM domain protein [Chlorobium limicola DSM 245]
          Length = 469

 Score = 88.1 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 59/335 (17%), Positives = 110/335 (32%), Gaps = 36/335 (10%)

Query: 49  FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGC 108
              G +  + +   D+I + +              L   +  +          +V++ G 
Sbjct: 79  ERLGEQVPDDLSGYDVIAITS------------RTLNASKAYRIGDAALRQGKIVILGGV 126

Query: 109 VAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDG 168
                 EE  +    V  V G +      EL      GK               +   D 
Sbjct: 127 HPTMLHEEASQHCTSV--VYG-EIESIWTELATDVLTGKMQPIYRAKTLKPMSDMHRPDF 183

Query: 169 GY----NRKRGVTAFLTI--QEGCDKFCTFCVVPYTRGI-EISRSLSQVVDEARKLIDN- 220
            Y       +  ++ + I   +GC   C FC  P   G     R L  V++E R   +  
Sbjct: 184 SYALNAKNAKKYSSLIPILATKGCPVGCNFCTTPTIYGKNYRYRELDLVLEEMRYHQERL 243

Query: 221 GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKA 280
           G  +I        ++    +      F  LL  ++++ G+      + +  D  +    A
Sbjct: 244 GKQKINF------SFMDDNISFRPKYFMTLLEEMAKL-GVHWNANISMNFLDKPEV---A 293

Query: 281 HGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA-YEYRQIIDRIRSVRPDIAISSDFIVGF 339
                     L +  +S +   LKS+ +       Y +++  + +    IAI   F+ GF
Sbjct: 294 ELAGRSGCDLLSIGFESLNPETLKSVQKGSNRLGNYEKVVSNLHNN--GIAIQGYFMFGF 351

Query: 340 PGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
             +T++ F+ T D + K           +P  GTP
Sbjct: 352 DNDTEESFQLTYDFIMKNRIEFPVFSLVTPFPGTP 386


>gi|332558725|ref|ZP_08413047.1| magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative
           cyclase [Rhodobacter sphaeroides WS8N]
 gi|332276437|gb|EGJ21752.1| magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative
           cyclase [Rhodobacter sphaeroides WS8N]
          Length = 612

 Score = 88.1 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 45/209 (21%), Positives = 78/209 (37%), Gaps = 11/209 (5%)

Query: 177 TAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLI-DNGVCEITLLGQNVNAW 235
            A   +  GC   C+FC           R   +VVDE  KL+ ++GV    L  +     
Sbjct: 195 VAIPNMARGCPFTCSFCSQWKFWRDYRVRDPKKVVDEIEKLVNEHGVGFFILADEEPTIN 254

Query: 236 RGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPV 295
           R K ++     F + + +      +     T          L+K +    ++  ++ L  
Sbjct: 255 RKKFIE-----FCEEMIARGLPDKVKWGINTRVTDVKRDKELLKFYRKAGLV--HISLGT 307

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
           ++ +   L   N+  T  E ++ I  +R    DI   + FIVG   ET +    T  +  
Sbjct: 308 EAAAQLKLDVFNKETTVAENKEAIRLLREA--DIFTEAQFIVGLDNETKETLEETYRMAW 365

Query: 356 KIGYAQAFSFKYSPRLGTPGS-NMLEQVD 383
                 A    Y+P   TP    + +QV+
Sbjct: 366 DWQPDLANWSMYTPWPFTPLFQELRDQVE 394


>gi|219670720|ref|YP_002461155.1| radical SAM protein [Desulfitobacterium hafniense DCB-2]
 gi|219540980|gb|ACL22719.1| Radical SAM domain protein [Desulfitobacterium hafniense DCB-2]
          Length = 581

 Score = 88.1 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 56/339 (16%), Positives = 106/339 (31%), Gaps = 45/339 (13%)

Query: 42  LRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDL 101
            R+E   +            AD+I   +C+I     ++  + + R+R +           
Sbjct: 45  ERIEAELYEA---------KADVIGF-SCYIWN--LKETLAVIRRLRPV-------SPHT 85

Query: 102 LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG--------------- 146
            +VV G     EGE  LR +P ++ VV  +      ELL     G               
Sbjct: 86  RIVVGGPEVSFEGEAFLRENPEIDGVVLGEGEITFLELLRAWESGASLSQVQGLAWRASS 145

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           + ++      +     L          +G  A++    GC   C +C+    +G     S
Sbjct: 146 REIILNPPRRQLAMAELPNPYNHEEELKGRLAYVETTRGCPFNCQYCLSSTFQG-VRYLS 204

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
             +     R+ +  G   I L+ +  N  +   L              +       +R  
Sbjct: 205 PERFRQIMRQTLRYGARTIKLVDRTFNVNKEHAL----RILDIAREEAAHYPPEAGIRVH 260

Query: 267 TSHPRD-MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS- 324
                + + +  +    D    +    + VQS     L +++R      + +    IR  
Sbjct: 261 CEMAGELLDEEWLLYLQDYPQDLVQFEIGVQSTHPETLAAIHRP---QHFERWAKYIREM 317

Query: 325 -VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
                  +  D I G P E  + FR + + V  +     
Sbjct: 318 QRLNKAHLHLDLIAGLPKEGWESFRRSFNEVYDVQPDML 356


>gi|313112785|ref|ZP_07798432.1| radical SAM domain protein [Faecalibacterium cf. prausnitzii
           KLE1255]
 gi|310624855|gb|EFQ08163.1| radical SAM domain protein [Faecalibacterium cf. prausnitzii
           KLE1255]
          Length = 485

 Score = 88.1 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 46/250 (18%), Positives = 87/250 (34%), Gaps = 27/250 (10%)

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRK-------RGVTAFLTIQ----EGCDKFCTF 192
           + G+ V + D       + +        R+           AF +IQ     GC   C F
Sbjct: 165 KDGEVVHNPDAEHITDLDEIPYAAEFIKRRLCVTDYVFPAAAFPSIQIFTGRGCPAQCNF 224

Query: 193 CVVPYT--RGIEISRSLSQVVDEARKLIDN--GVCEITLLGQNVNAWRGKGLDGEKCTFS 248
           CV P T        RS   V+ E   +++N   V EI                  K   S
Sbjct: 225 CVYPQTLHGHRYRLRSPENVIGEIEYIVNNFPDVKEIVFEDDTFTI--------NKQRVS 276

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
           ++   + +     ++R+  +   ++    +            +   ++S + +ILK++++
Sbjct: 277 EICNMMIQKGINKKIRWLCNARVNLDYETMCLMKKAG--CHLIIPGIESVNQQILKNIHK 334

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
             T  +    +   R     + I + ++VG  GET +  + T+    +     A  F   
Sbjct: 335 GTTVEQIEAYVANARKA--GLMIHACYMVGNQGETHETMKETLAAAMRFKTDTAQFFPLI 392

Query: 369 PRLGTPGSNM 378
           P  GT   N 
Sbjct: 393 PYPGTGAYNW 402


>gi|115524999|ref|YP_781910.1| radical SAM domain-containing protein [Rhodopseudomonas palustris
           BisA53]
 gi|115518946|gb|ABJ06930.1| Radical SAM domain protein [Rhodopseudomonas palustris BisA53]
          Length = 606

 Score = 88.1 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 46/278 (16%), Positives = 102/278 (36%), Gaps = 19/278 (6%)

Query: 105 VAGCVAQ---AEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVE---- 157
           V+GC+A       +    +   +++  G     RL  ++  A  G+     +Y  +    
Sbjct: 127 VSGCLAMLPDIPADIRAAQQMGISMFSGEAEDKRLDLVVRDAWNGRLAPLYNYMDDLPSL 186

Query: 158 DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI-EISRSLSQVVDEARK 216
           +      +      R  G  + + +  GC   C+FC +   +G     RS   +    R+
Sbjct: 187 EGEPASILPREQVRRTSGSLSSIDLGRGCPYQCSFCTIINVQGRKSRFRSPEDLERIVRE 246

Query: 217 LIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDC 276
               GV    +   N    +            D L ++ E +GL  + +T          
Sbjct: 247 NYAQGVGRFFITDDNFARNKHWEE------LLDRLIAIREGEGL-NIGFTIQVDTLCHKI 299

Query: 277 LIKAHGDLDVLMPYLHLPVQSGS-DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDF 335
                      +  + + +++ + D +L +  R++   EYR ++ + R         + +
Sbjct: 300 PNFIEKATRAGVRRVFIGLENINPDNLLAANKRQNKITEYRAMLQKWRE--HGALTYAGY 357

Query: 336 IVGFPGETDDDFRATMDLVD-KIGYAQAFSFKYSPRLG 372
           I+GFPG+T +  +  ++++  ++       F  +P  G
Sbjct: 358 IIGFPGDTKESIKRDVEIIKRELPLDILEFFFLTPLPG 395


>gi|77463851|ref|YP_353355.1| magnesium-protoporphyrin IX monomethylester oxidative cyclase, 66
           kDa subunit(bchE) [Rhodobacter sphaeroides 2.4.1]
 gi|126462686|ref|YP_001043800.1| magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative
           cyclase [Rhodobacter sphaeroides ATCC 17029]
 gi|85681289|sp|Q9RFD3|BCHE_RHOS4 RecName: Full=Anaerobic magnesium-protoporphyrin IX monomethyl
           ester [oxidative] cyclase; Short=Anaerobic
           Mg-protoporphyrin IX monomethyl ester oxidative cyclase
 gi|77388269|gb|ABA79454.1| Magnesium-protoporphyrin IX monomethylester oxidative cyclase, 66
           kDa subunit(bchE) [Rhodobacter sphaeroides 2.4.1]
 gi|126104350|gb|ABN77028.1| magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative
           cyclase [Rhodobacter sphaeroides ATCC 17029]
          Length = 612

 Score = 88.1 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 45/209 (21%), Positives = 78/209 (37%), Gaps = 11/209 (5%)

Query: 177 TAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLI-DNGVCEITLLGQNVNAW 235
            A   +  GC   C+FC           R   +VVDE  KL+ ++GV    L  +     
Sbjct: 195 VAIPNMARGCPFTCSFCSQWKFWRDYRVRDPKKVVDEIEKLVNEHGVGFFILADEEPTIN 254

Query: 236 RGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPV 295
           R K ++     F + + +      +     T          L+K +    ++  ++ L  
Sbjct: 255 RKKFIE-----FCEEMIARGLPDKVKWGINTRVTDVKRDKELLKFYRKAGLV--HISLGT 307

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
           ++ +   L   N+  T  E ++ I  +R    DI   + FIVG   ET +    T  +  
Sbjct: 308 EAAAQLKLDVFNKETTVAENKEAIRLLREA--DIFTEAQFIVGLDNETKETLEETYRMAW 365

Query: 356 KIGYAQAFSFKYSPRLGTPGS-NMLEQVD 383
                 A    Y+P   TP    + +QV+
Sbjct: 366 DWQPDLANWSMYTPWPFTPLFQELRDQVE 394


>gi|90425295|ref|YP_533665.1| magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative
           cyclase [Rhodopseudomonas palustris BisB18]
 gi|90107309|gb|ABD89346.1| Magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative
           cyclase [Rhodopseudomonas palustris BisB18]
          Length = 569

 Score = 88.1 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 66/387 (17%), Positives = 126/387 (32%), Gaps = 62/387 (16%)

Query: 43  RMEDMFFSQGYE-------RVNSMDDADLIVL--------NTCHIREKAAEKVYSFLGRI 87
            +     S G+           ++ D DL  +          C     +  K    L   
Sbjct: 40  YLAGALKSNGFTDLRFIDAMTENISDEDLAAILAEEKPDMIGCTSITPSIYKAERTLQIA 99

Query: 88  RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVV------------------- 128
           + +         D + V+ G  A    +++L  +P ++VVV                   
Sbjct: 100 KQVH-------PDCVTVLGGVHATFMFQQVLGEAPWIDVVVRGEGEEILVELARAIESGQ 152

Query: 129 --GPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGG--------YNRKRGVTA 178
               +   +     ++A  G +VV T  +   K       D G        Y       A
Sbjct: 153 WPANRNDIKGIAFPDQAADGTQVVATAAAPTIKDLDGISPDWGILKWDMYKYIPMNTRVA 212

Query: 179 FLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRG 237
              +  GC   C+FC           R   +VVDE  +L++   V    L  +     R 
Sbjct: 213 IPNMARGCPFTCSFCSQWKFWRDYRVRDPKKVVDEIEELVNKYQVGFFILADEEPTINRK 272

Query: 238 KGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQS 297
           K +   +   +  L    +++  +  R T     +    L+K + +  ++  ++ L  ++
Sbjct: 273 KFIQFCEELIARGLNK--KVQWGINTRVTDILRDE---KLLKFYNEAGLM--HVSLGTEA 325

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
            +   L   N+     + ++ I  +R     I   + FIVG   ET +    T  +    
Sbjct: 326 AAQLKLDLFNKETKISDNKKAIRLLREA--GIVCEAQFIVGLDSETPETLEETYRMAMDW 383

Query: 358 GYAQAFSFKYSPRLGTPGSN-MLEQVD 383
               A    Y+P   TP    + ++V+
Sbjct: 384 KPDLANWSMYTPWPFTPLFKELSDKVE 410


>gi|221639706|ref|YP_002525968.1| magnesium-protoporphyrin IX monomethylester oxidative cyclase, 66
           kDa subunit BchE [Rhodobacter sphaeroides KD131]
 gi|221160487|gb|ACM01467.1| magnesium-protoporphyrin IX monomethylester oxidative cyclase, 66
           kDa subunit BchE [Rhodobacter sphaeroides KD131]
          Length = 612

 Score = 88.1 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 45/209 (21%), Positives = 78/209 (37%), Gaps = 11/209 (5%)

Query: 177 TAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLI-DNGVCEITLLGQNVNAW 235
            A   +  GC   C+FC           R   +VVDE  KL+ ++GV    L  +     
Sbjct: 195 VAIPNMARGCPFTCSFCSQWKFWRDYRVRDPKKVVDEIEKLVNEHGVGFFILADEEPTIN 254

Query: 236 RGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPV 295
           R K ++     F + + +      +     T          L+K +    ++  ++ L  
Sbjct: 255 RKKFIE-----FCEEMIARGLPDKVKWGINTRVTDVKRDKELLKFYRKAGLV--HISLGT 307

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
           ++ +   L   N+  T  E ++ I  +R    DI   + FIVG   ET +    T  +  
Sbjct: 308 EAAAQLKLDVFNKETTVAENKEAIRLLREA--DIFTEAQFIVGLDNETKETLEETYRMAW 365

Query: 356 KIGYAQAFSFKYSPRLGTPGS-NMLEQVD 383
                 A    Y+P   TP    + +QV+
Sbjct: 366 DWQPDLANWSMYTPWPFTPLFQELRDQVE 394


>gi|316936009|ref|YP_004110991.1| Radical SAM domain-containing protein [Rhodopseudomonas palustris
           DX-1]
 gi|315603723|gb|ADU46258.1| Radical SAM domain protein [Rhodopseudomonas palustris DX-1]
          Length = 591

 Score = 88.1 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 48/280 (17%), Positives = 101/280 (36%), Gaps = 23/280 (8%)

Query: 105 VAGCVAQAEGEEI---LRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFE 161
           V+GC+A  +G+ I     R   V +  G     R   +L+ A  G+     ++  +    
Sbjct: 126 VSGCLAMLDGKAIGLDDCRDMGVAMFAGEAEGGRFDGVLQDAAAGQLQPVYNFLNDLPGI 185

Query: 162 RLSIVDG----GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI-EISRSLSQVVDEARK 216
                         R  G++  +    GC   C+FC +   +G     R+   +    R+
Sbjct: 186 EGVPAPYLPLATIKRTLGLSTSVDAGRGCPYQCSFCTIINVQGRKSRYRTPDDIEAMVRR 245

Query: 217 LIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDC 276
               G+ +  +   N    +          +  +L  L +I+    +        D    
Sbjct: 246 NWAQGISKYFITDDNFARNK---------DWEAILDRLIQIRETEDIPLGFMIQVDTLCH 296

Query: 277 LIKAHGDLDV--LMPYLHLPVQSGSDRILKSMNRRHTA-YEYRQIIDRIRSVRPDIAISS 333
            I    +      +  + + +++ +   L + N+R     EYR ++   +     I   +
Sbjct: 297 KIPRFIEKAKRAGVTRVFIGLENINPANLLTANKRQNKITEYRTMLLAWKD--HGIITLA 354

Query: 334 DFIVGFPGETDDDFRATMDLVD-KIGYAQAFSFKYSPRLG 372
            +I+GFP +T +  RA +D++  ++       F  +P  G
Sbjct: 355 GYILGFPADTPESIRADIDIIKRELPIDVMEFFCLTPLPG 394


>gi|289578160|ref|YP_003476787.1| radical SAM protein [Thermoanaerobacter italicus Ab9]
 gi|289527873|gb|ADD02225.1| Radical SAM domain protein [Thermoanaerobacter italicus Ab9]
          Length = 562

 Score = 87.7 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 58/311 (18%), Positives = 113/311 (36%), Gaps = 33/311 (10%)

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
           NL  +  K     ++V+ G  A  + + +L +   V+ +V  +      ELLE A  GKR
Sbjct: 71  NLAENIKKILPKTILVLGGPEASYDVDNLLSK-GFVDYIVLGEGEIAFKELLE-ALEGKR 128

Query: 149 VVDTDYSVEDKF---------------ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC 193
            +     +  KF               + + I            A+     GC   C +C
Sbjct: 129 NIKNVSGISYKFNGQIIIQPQKNYVNLDEIPISYEEEENLDNKLAYYETSRGCPFKCAYC 188

Query: 194 VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS 253
           +           S+ +V  + +  +D GV  + L+ ++ NA         +    ++L  
Sbjct: 189 L-SSIDNKLRYESIEKVEKDLKWFVDRGVKILKLIDRSFNA--------NRKRAKEILNI 239

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
           + +I G         +P  + +  I+    L+       + VQ+ +   LK ++R     
Sbjct: 240 MKKIGGDTVFHCEV-NPELVDEEFIEELKGLEK-RIQFEVGVQTTNKNSLKKISRTTAVE 297

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
           +  + I  ++     I +  D I G P ++ + F    D V  +   +          GT
Sbjct: 298 KSLRGIKLLKEA--GIKLHVDLIAGLPEDSFETFSKAFDDVYNLKPDEIQLGFLKVLKGT 355

Query: 374 PGSNMLEQVDE 384
           P   +  +V+E
Sbjct: 356 P---LKRKVEE 363


>gi|316935161|ref|YP_004110143.1| magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative
           cyclase [Rhodopseudomonas palustris DX-1]
 gi|315602875|gb|ADU45410.1| magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative
           cyclase [Rhodopseudomonas palustris DX-1]
          Length = 565

 Score = 87.7 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 53/320 (16%), Positives = 111/320 (34%), Gaps = 40/320 (12%)

Query: 95  IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVD--- 151
            +    ++ ++ G  A    +++L  +P V+V+V  +    + EL      G    +   
Sbjct: 88  KQINPKIVTMLGGVHATFMYQQVLSEAPWVDVIVRGEGEEIVVELARAVASGNWPANRSE 147

Query: 152 -----------------------TDYSVEDKFERLSIVDGGYNRKRGVTAFLTI---QEG 185
                                  T   ++       ++D    R   +   + I     G
Sbjct: 148 IKGLAYTEGSNGESQIVATPAAPTVKDLDAIKPDWGVLDWTLYRYIPMNTRVAIPNMARG 207

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEK 244
           C   C+FC           R   +VVDE ++L++   V    L  +     R K +   +
Sbjct: 208 CPFTCSFCSQWKFWRDYRVRDPKKVVDEIQELVEKYDVGFFILADEEPTINRKKFIQFCE 267

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304
              +  L    +++  +  R T     +    L+K + +  ++  ++ L  ++ +   L 
Sbjct: 268 ELIARGLNK--KVQWGINTRVTDILRDE---QLLKFYNEAGLM--HVSLGTEAAAQLKLD 320

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
             N+     + ++ I  +R     I   + FIVG   ET +    T  +        A  
Sbjct: 321 LFNKETKIADNKKAIRLLREA--GIVTEAQFIVGLDSETPETLEETYRMAMDWKPDLANW 378

Query: 365 FKYSPRLGTPGSN-MLEQVD 383
             Y+P   TP    + ++V+
Sbjct: 379 SMYTPWPFTPLFKELSDKVE 398


>gi|302349081|ref|YP_003816719.1| Fe-S oxidoreductase [Acidilobus saccharovorans 345-15]
 gi|302329493|gb|ADL19688.1| Fe-S oxidoreductase [Acidilobus saccharovorans 345-15]
          Length = 536

 Score = 87.7 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 56/300 (18%), Positives = 111/300 (37%), Gaps = 28/300 (9%)

Query: 93  SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDT 152
           +       + +VV G       +    R   V+VV   +     P +  R   G+ +   
Sbjct: 147 AVKAHRNHMKIVVGGPATWQLTDTGYHRKLGVDVVYEGEFESLGPSVFSRLLRGEPLPPV 206

Query: 153 DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS-QVV 211
             +   K E +  +    N        + +  GC + C+FC  P   G   S      + 
Sbjct: 207 VSAPPAKLEDIPTILTPAN-----GGLVEVSRGCGRGCSFC-TPTLSGAIKSLPFEGHID 260

Query: 212 DEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS-- 268
            E R  I+  G+ +I L  +    +  KG++       +L      +       YT S  
Sbjct: 261 QEIRVNIERGGMKDINLHSEEFFRYGAKGIEPNPEKVIELTRKAYRLVKSYGDEYTISTD 320

Query: 269 --------HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN----RRHTAYEYR 316
                   +   M +   +   + D    ++ + +++GS R+L+ +       +T  +Y 
Sbjct: 321 FTTAAAVAYRPKMVEEAAQYINEGDR-RTFIEMGIETGSPRLLRKLMPGKALPYTPEQYP 379

Query: 317 QIIDRIRSVRPD--IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
           +++++   +  D    +    IV  PGET+DD    ++L+D+I   +  +F   P    P
Sbjct: 380 EVVEQAIGILNDNRWVVVGTMIVNLPGETEDDVIYDLELLDRIKKLRVITF---PLPFIP 436


>gi|90424371|ref|YP_532741.1| radical SAM family protein [Rhodopseudomonas palustris BisB18]
 gi|90106385|gb|ABD88422.1| Radical SAM [Rhodopseudomonas palustris BisB18]
          Length = 605

 Score = 87.7 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 48/301 (15%), Positives = 105/301 (34%), Gaps = 32/301 (10%)

Query: 99  GDLLVVVAGCVAQAEGEEILRRSPI------------VNVVVGPQTYYRLPELLERARFG 146
             L V +  C+        +   P             +++  G     RL E++  A  G
Sbjct: 113 PFLAVGLQVCIGGFHVSGCIAMLPELPADIRAAQAMGISLFAGEAEDKRLDEVVRDAWAG 172

Query: 147 KRVVDTDYSVEDKFERLS------IVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           +  +   Y+  D    L       +      R  G  + + +  GC   C+FC +   +G
Sbjct: 173 R--LKPLYNYMDDLPSLQGEPAAILPREHVRRTSGSLSSIDLGRGCPYQCSFCTIINVQG 230

Query: 201 I-EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
                RS   +    R     G+    +   N    +            D L ++ E +G
Sbjct: 231 RKSRFRSADDLERVVRDNYAQGIGRFFITDDNFARNKHWEE------LLDRLIAIREGEG 284

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS-DRILKSMNRRHTAYEYRQI 318
           L  + +T                     +  + + +++ + D +L +  R++   EYR +
Sbjct: 285 L-NIGFTIQVDTLCHKIPNFIEKAARAGVRRVFIGLENINPDNLLAANKRQNKITEYRVM 343

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD-KIGYAQAFSFKYSPRLGTPGSN 377
           + + R+        + +I+GFPG+T +  +  ++++  ++       F  +P  G+    
Sbjct: 344 LQKWRA--HGALTYAGYIIGFPGDTKESIKRDVEIIKRELPLDILEFFFLTPLPGSEDHK 401

Query: 378 M 378
           +
Sbjct: 402 L 402


>gi|219847265|ref|YP_002461698.1| magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative
           cyclase [Chloroflexus aggregans DSM 9485]
 gi|219541524|gb|ACL23262.1| magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative
           cyclase [Chloroflexus aggregans DSM 9485]
          Length = 567

 Score = 87.7 bits (216), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 52/313 (16%), Positives = 104/313 (33%), Gaps = 38/313 (12%)

Query: 99  GDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA--------------- 143
            +  +++ G        ++L  +P ++ +V  +    + EL++                 
Sbjct: 92  PNARLILGGIHPTFMYGQVLTEAPWIDYIVRGEGEEIIVELMQAIAAGSDRRDRSKIKGI 151

Query: 144 ---RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGV-------TAFLTIQEGCDKFCTFC 193
                GK V           ++L+     Y+ KR +        A      GC   C FC
Sbjct: 152 AYLEDGKVVATPARDPIADLDKLTPDWSLYDWKRYIYVPLNVRVAVPNFARGCPFTCRFC 211

Query: 194 VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS 253
                     SRS  + VDE   L+ +      +L         K          +L+  
Sbjct: 212 SQWKFWRRYRSRSPQKFVDEIETLVRDHKVGFFILADEEPTINRKKF---TALCEELVRR 268

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
              +   +  R T     +    L +A G     + ++ L  ++ +   L    ++ T  
Sbjct: 269 KLPVYWGINTRVTDILRDEALLPLWRAAG-----LVHISLGTEAAAQMNLDRFRKQTTIE 323

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
           + ++ I+ I+     +   + FI+G   ET +    T   V       A    Y+P    
Sbjct: 324 QNKRAIELIKK--HGMVAEAQFIMGMENETPETIEETYRYVLDWKPDMANWNMYTPW--- 378

Query: 374 PGSNMLEQVDENV 386
           P + + E++ + V
Sbjct: 379 PFAELFEELGDKV 391


>gi|114566547|ref|YP_753701.1| magnesium-protoporphyrin IX monomethyl ester oxidative cyclase
           [Syntrophomonas wolfei subsp. wolfei str. Goettingen]
 gi|114337482|gb|ABI68330.1| magnesium-protoporphyrin IX monomethyl ester oxidative cyclase
           [Syntrophomonas wolfei subsp. wolfei str. Goettingen]
          Length = 584

 Score = 87.7 bits (216), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 51/286 (17%), Positives = 103/286 (36%), Gaps = 26/286 (9%)

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G I  +     K      +++ G     +   IL  +P ++ ++  +    L E+LE  
Sbjct: 68  VGAILEICREYKKVAPQSYIILGGPEVSYDARNILMENPSIDCIIRGEGEESLKEVLESI 127

Query: 144 RFGKRVVDT------------DYSVEDKFERLSIVDGGYNRKRGV---TAFLTIQEGCDK 188
              K                 D    +    L I+   Y++         +     GC  
Sbjct: 128 AGNKSRTAIKGISYRDGSSIIDNPDRELIADLDIIPFPYDQLDSYHNRILYYETSRGCPY 187

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS 248
            C++C+    +G      L +V  +  KLI+ GV E+  + +  NA        ++    
Sbjct: 188 NCSYCLSSTIKG-VRFFPLERVKKDLAKLINAGVREVKFVDRTFNA--------DERRAR 238

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
           +++  +   +G  R          +S   I     +   +    + +QS     LK++ R
Sbjct: 239 EIMEFIISQQGNTRFHCE-ITAEYLSPEFISFLATVPPDLFNFEIGIQSTCPESLKAVRR 297

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           +      R  I+R+++   +I +  D I G P E+   F  + + V
Sbjct: 298 KSNWTHLRTNIERLQAAS-NIHLHLDLIAGLPYESYKRFARSFNDV 342


>gi|258516281|ref|YP_003192503.1| Radical SAM domain-containing protein [Desulfotomaculum acetoxidans
           DSM 771]
 gi|257779986|gb|ACV63880.1| Radical SAM domain protein [Desulfotomaculum acetoxidans DSM 771]
          Length = 448

 Score = 87.7 bits (216), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 52/331 (15%), Positives = 109/331 (32%), Gaps = 41/331 (12%)

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R   +     K+G  + V++ G  A A  +E L      + V   +      +++   + 
Sbjct: 72  RAYEISKHYRKQG--IKVILGGIHASANSDEALA---YADSVCIGEAEELWEQVIADVQT 126

Query: 146 G--KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP--YTRGI 201
           G  K+    D         +         K   T  +    GC   C FC     Y    
Sbjct: 127 GNLKKKYYNDKPTNLANTPIPKWSLIDKSKYLYTNVVVTSRGCPFRCEFCYNSCEYVHNK 186

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
             +R +  V++E + L   G  ++  +  N                      L +IK L 
Sbjct: 187 FRNRPIEHVIEEVKAL---GTKQVMFIDDNFIGNIIWT-----------KEFLRQIKPLY 232

Query: 262 RLRYTTSHPRDMSD-CLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR-RHTAYEYRQII 319
              +       +    L+    +       L +  ++ +   ++S+++ ++    Y ++I
Sbjct: 233 LKWHAAVSANLVQHLDLLDEMKESG--CESLFIGFETINKASIESVSKYQNNIESYEKLI 290

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
             I S    I +++  + GF  + D  F  T++ + K       +   +P  GT      
Sbjct: 291 QEIHSR--GIMVNASLVFGFDDDEDTVFEETLNWLVKNKIETMTAHILTPYPGTK----- 343

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACV 410
                    +RL    + +  +   +N + V
Sbjct: 344 -------IYQRLKSQSRIIDHEPTHYNTSYV 367


>gi|326790410|ref|YP_004308231.1| radical SAM protein [Clostridium lentocellum DSM 5427]
 gi|326541174|gb|ADZ83033.1| Radical SAM domain protein [Clostridium lentocellum DSM 5427]
          Length = 453

 Score = 87.7 bits (216), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 65/361 (18%), Positives = 117/361 (32%), Gaps = 47/361 (13%)

Query: 54  ERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAE 113
           E +   + ADL+ +                  R   +     K G     V+ G  A   
Sbjct: 50  EDIPYDEPADLVAITVETFTA----------RRAYEISEEYRKRGVPT--VMGGMHAMLL 97

Query: 114 GEEILRRSPIVNVVVGPQTYYRLPELLERARFGK--RVVDTDYSVEDKFERLSIVDGGYN 171
            EE++  +  V  ++G        ++LE  + G+  +V         +   ++  D    
Sbjct: 98  PEEVMAHASSV--IIG-DAEDVWGQMLEDFKEGRLQKVYHAIQPTIPQKGVITRRDIFEG 154

Query: 172 RKRGVTAFLTIQEGCDKFCTFCVVP-YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQ 230
           +       L    GC   C FC    Y +G   +R + +V++E +         +  +  
Sbjct: 155 KGYLPITLLQFSRGCKYHCNFCASSSYFKGRHYTRDVEEVIEEIQ---SQKRKLLFFVDD 211

Query: 231 NVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY 290
           N+ +      +  K  F  L      I   V+     S      + L+            
Sbjct: 212 NIVS----DFEKAKALFRGL------IPLKVKWVSQGSIDMLEDEELMSLMVKSG--CLG 259

Query: 291 LHLPVQSGSDRILKSMNRRHTAY----EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDD 346
           L +  +S ++  L+  N+          Y++ I  +R     +   + F VG+ G+T + 
Sbjct: 260 LVIGFESINEANLEFANKGANRKKALNHYKKEIKALRKW--GLQTWAAFTVGYDGDTKES 317

Query: 347 FRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAE-RLLCLQKKLREQQVSF 405
              T     K  +  A      P   TP         E +K E RLL   K    +   F
Sbjct: 318 IEETCRFAIKNKFCFAAYNILMPYPNTPLY-------EKLKKEGRLLYDGKWWLHEAYRF 370

Query: 406 N 406
           N
Sbjct: 371 N 371


>gi|322435267|ref|YP_004217479.1| hopanoid biosynthesis associated radical SAM protein HpnJ
           [Acidobacterium sp. MP5ACTX9]
 gi|321162994|gb|ADW68699.1| hopanoid biosynthesis associated radical SAM protein HpnJ
           [Acidobacterium sp. MP5ACTX9]
          Length = 496

 Score = 87.7 bits (216), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 47/236 (19%), Positives = 81/236 (34%), Gaps = 22/236 (9%)

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE--ISRSLS 208
           D  ++ E     + +              L    GC   CTFC+ P T        RS  
Sbjct: 177 DMPWATEIYARDMDVTKYNVPFLLHPYVSLYSTRGCPAQCTFCLWPQTLSGHAWRKRSTD 236

Query: 209 QV---VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            V   +  A+KL    V E        N  + +            +   +++K L  + +
Sbjct: 237 DVAAEMANAKKLFP-HVKEFFFDDDTFNIQKERT-----------IELCAKLKPL-NITW 283

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
           + +         +KA  +       L +  +SG  +ILK++ +  T    R+ +     +
Sbjct: 284 SCTSRVTTHRETLKAMKEAG--CRLLIVGFESGDPQILKNIKKGATVERAREFVKDCHDL 341

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
              + I +DFI+G PGET    R T+D    +              GT      E+
Sbjct: 342 --GLIIHADFILGLPGETKQSIRNTIDFAKSLDCETIQVSIAHAYPGTEFYEFAEK 395


>gi|194334273|ref|YP_002016133.1| radical SAM domain-containing protein [Prosthecochloris aestuarii
           DSM 271]
 gi|194312091|gb|ACF46486.1| Radical SAM domain protein [Prosthecochloris aestuarii DSM 271]
          Length = 467

 Score = 87.3 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 37/193 (19%), Positives = 72/193 (37%), Gaps = 15/193 (7%)

Query: 185 GCDKFCTFCVVPYTRGI-EISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDG 242
           GC   C FC  P   G     R +  V+DE R   +  G  +I        ++    +  
Sbjct: 204 GCPVGCNFCTTPTIYGKNYRYREIDFVIDEMRYHQERLGKQKINF------SFMDDNISF 257

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
               F +LL  ++++     +R+  +   +       A          + +  +S +   
Sbjct: 258 RPAYFMELLEEMAKLG----IRWNANISMNFLHKPEIAELAGRSGCDLMSIGFESLNPET 313

Query: 303 LKSMNRRHTA-YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
           LKS+++       Y  ++  +      +AI   F+ GF  ++++ F+ T D + K     
Sbjct: 314 LKSVHKGSNRLDNYETVVSNLHKN--GVAIQGYFMFGFDNDSEESFQLTYDFIMKNQIEF 371

Query: 362 AFSFKYSPRLGTP 374
                 +P  GTP
Sbjct: 372 PVFSLVTPFPGTP 384


>gi|194334737|ref|YP_002016597.1| radical SAM domain-containing protein [Prosthecochloris aestuarii
           DSM 271]
 gi|194312555|gb|ACF46950.1| Radical SAM domain protein [Prosthecochloris aestuarii DSM 271]
          Length = 500

 Score = 87.3 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 55/326 (16%), Positives = 121/326 (37%), Gaps = 27/326 (8%)

Query: 56  VNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGE 115
              +  AD++ ++   +++K+A ++ S   +              ++ V  G +  +E E
Sbjct: 60  AEDLAWADVVFISAMGVQQKSARELISRCSQA------------GIVTVAGGPLFTSEPE 107

Query: 116 EILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGY-NRKR 174
                 P V+  V  +    LP  L+    G              +   I D G  + K+
Sbjct: 108 ----CFPEVDHFVLNEAETTLPLFLDDLATGNPGKYYRSDDFPSIKTSPIPDWGVLDMKK 163

Query: 175 GVTAFLTIQEGCDKFCTFCVVPYTRG-IEISRSLSQVVDEARKLIDNG-VCEITLLGQNV 232
             +  +    GC   C FC V    G    ++S  Q+++E   L +NG    +  +  N 
Sbjct: 164 YASMAIQFSRGCPFQCDFCNVTALFGHKIRTKSSQQIIEELNGLKENGWQDSVFFVDDNF 223

Query: 233 NAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLH 292
            A +      +K    +L+   +  +   +     S        L+     +      + 
Sbjct: 224 IANK---TYLKKVLLPELIEWQAHNRTTTKFYTECSINIADDAELMDLM--VKAGFNQVF 278

Query: 293 LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV-RPDIAISSDFIVGFPGETDDDFRATM 351
           + +++  +  L++  ++H     R +++ ++++ R  + + + FIVGF  +T   FR  +
Sbjct: 279 IGIETPDNSALEACGKQHNTS--RDLLENVKTIQRAGLEVQAGFIVGFDTDTPSIFRQQI 336

Query: 352 DLVDKIGYAQAFSFKYSPRLGTPGSN 377
           + + + G   A         GT    
Sbjct: 337 EFIQQSGIVTAMVGLLQALPGTRLYE 362


>gi|158338885|ref|YP_001520062.1| radical SAM domain-containing protein [Acaryochloris marina
           MBIC11017]
 gi|158309126|gb|ABW30743.1| radical SAM domain protein [Acaryochloris marina MBIC11017]
          Length = 478

 Score = 87.3 bits (215), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 59/343 (17%), Positives = 113/343 (32%), Gaps = 54/343 (15%)

Query: 59  MDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEIL 118
             D DL++++T         K    +   +              V   G       EE L
Sbjct: 67  AKDYDLVIMHTSTPSLANDVKCAEAIKAQK----------PGTRVGFIGAHVAVLPEETL 116

Query: 119 RRSPIVNVVVGPQTYYRLPELLE------------RARFGKRVVDTDYSVEDKFERLSIV 166
           R +PI++ V   +  Y   ++ E            R    +   + +  +   ++ +  V
Sbjct: 117 RDNPIIDFVCRNEFDYTCKDVAEGLPLSEIKGLSYRDADNQIQHNPERDLIHDWDAMPSV 176

Query: 167 DGGYNRKRGVTAFLT-----------IQEGCDKFCTFCVVPYTRG--IEISRSLSQV--- 210
              Y R   +  +                GC   C+FC+ P T G     ++S   V   
Sbjct: 177 LPVYARDLDIKKYFIGYLLHPYISFYTGRGCPAKCSFCLWPQTIGGHNYRAKSPEAVGKE 236

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270
           +++A+ L  + V E                        D   +++  + L RL+ T S  
Sbjct: 237 MEQAKYLFGDTVREYMFDDDTFT--------------IDKPRAIAISEHLKRLKLTWSCN 282

Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330
              +          D  +  L +  +SG+ +IL  +N+       R+ +   R +   I 
Sbjct: 283 ARANLDYDTLKQLRDNGLRLLLVGFESGNQQILDGINKGIKLEVARKFMANCRKL--GIT 340

Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
           +   FI+G P E+ +    T+    ++          +P  GT
Sbjct: 341 VHGTFIIGLPNESQETIEETIRFACEVNPHTIQVSIAAPYPGT 383


>gi|78222914|ref|YP_384661.1| cobalamin B12-binding/radical SAM family protein [Geobacter
           metallireducens GS-15]
 gi|78194169|gb|ABB31936.1| Cobalamin B12-binding/Radical SAM [Geobacter metallireducens GS-15]
          Length = 472

 Score = 87.3 bits (215), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 46/310 (14%), Positives = 98/310 (31%), Gaps = 40/310 (12%)

Query: 92  NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG----- 146
               ++   +  V  G  A + G  +L   P ++ +V  +      EL+     G     
Sbjct: 90  ERIKEKAPGITTVFGGAHACSVGVGLLDTFPAIDYLVIGEGEQTFFELVTNLDHGGSGIP 149

Query: 147 ----------------KRVVDTDYSVEDKFERLSIVDGGY-----NRKRGVTAFLTIQEG 185
                           + + + D      + RL      Y     +  +     +    G
Sbjct: 150 GVGYRENGKGVISALREHIANLDDLPFPAYHRLPQFPKRYILPLFSYPKAPNTSIISSRG 209

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARK-LIDNGVCEITLLGQNVNAWRGKGLDGEK 244
           C   C++C            S   +V+  +    D G+  +          R        
Sbjct: 210 CPYQCSYCDRSVFSRGFRFNSPEYIVEHLKMLNRDYGIRHVFFYDDLFTTDR-----ARV 264

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304
             F +L       + L       +    +   L++           ++  ++SG   ++K
Sbjct: 265 ARFCELKER----ERLPVTYNCIARLEHVDAELLRLLKRSG--CWQVNFGIESGDPEVIK 318

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
              + +   E ++ +  +R     + +   F+VG PGET++  R T+D    +   +   
Sbjct: 319 KHRKFYGLDEVQRKLQLVRDT--GMRVKGLFMVGLPGETEESIRRTIDYALALPLDEINV 376

Query: 365 FKYSPRLGTP 374
            K++P  G P
Sbjct: 377 TKFTPFPGAP 386


>gi|297544440|ref|YP_003676742.1| Radical SAM domain-containing protein [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
 gi|296842215|gb|ADH60731.1| Radical SAM domain protein [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
          Length = 562

 Score = 87.3 bits (215), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 58/316 (18%), Positives = 114/316 (36%), Gaps = 33/316 (10%)

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +    NL  +  K     ++V+ G  A  + + +L +   V+ +V  +      ELLE A
Sbjct: 66  IEIALNLAENIKKILPKTILVLGGPEASYDVDYLLSK-GFVDYIVLGEGEIAFKELLE-A 123

Query: 144 RFGKRVVDTDYSVEDKF---------------ERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
             GKR +     +  KF               + + I   G        A+     GC  
Sbjct: 124 LEGKRNIKNVSGISYKFNGQVIIQPQKDYVNLDEIPISYEGEEDLSNKLAYYETSRGCPF 183

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS 248
            C +C+           S+ +V  + +  +D GV  + L+ ++ NA         +    
Sbjct: 184 KCAYCL-SSIDNKLRYESIEKVEKDLKWFVDKGVKILKLIDRSFNA--------NRKRAK 234

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
           ++L  + +I G +       +P  +    I+    L+       + +Q+ +   LK ++R
Sbjct: 235 EILNIMKKIGGDIVFHCEV-NPELVDKEFIEELKGLEK-RIQFEVGIQTTNKNSLKKISR 292

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
                +  + I  ++     I +  D I G P ++   F    D V  +   +       
Sbjct: 293 TTAVEKSLRGIKLLKEA--GIKLHVDLIAGLPEDSFKTFSKAFDDVYNLKPDEIQLGFLK 350

Query: 369 PRLGTPGSNMLEQVDE 384
              GTP   +  +V+E
Sbjct: 351 VLKGTP---LKRKVEE 363


>gi|325968646|ref|YP_004244838.1| radical SAM protein [Vulcanisaeta moutnovskia 768-28]
 gi|323707849|gb|ADY01336.1| Radical SAM domain protein [Vulcanisaeta moutnovskia 768-28]
          Length = 472

 Score = 87.3 bits (215), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 65/348 (18%), Positives = 114/348 (32%), Gaps = 44/348 (12%)

Query: 92  NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR------- 144
            +  +   D+ +++ G       EE L     V+VVV  +  Y   EL+           
Sbjct: 89  KAIREYDNDIPIMMGGPHVTFMYEEALNN--GVDVVVRGEGEYTTLELVNAIEGHGLDPM 146

Query: 145 -----------FGKRVVDT-DYSVEDKFERLSIVDGGYNRKRGVTAF--------LTIQE 184
                       G +V+ T D       + L             T F        +    
Sbjct: 147 HLRAIRGLAFKDGDQVIRTPDRPPVRNLDELPPPARHLLPMDKYTIFGKPIRIVHVMASR 206

Query: 185 GCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
           GC   C+FC   Y  G     RS   V DE    ++     I +   +            
Sbjct: 207 GCPYGCSFCSTSYFWGRMVRYRSAKAVADEIEDAMNTYKTNIIVFTDD-------EFTLG 259

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
           K    D L  L E K  +      S    +   ++ A          L+  V+SGS   +
Sbjct: 260 KRFVYDFLKELRERKLDINFSCG-SRVDTIDKEMMTALKSHG--CTALYFGVESGSQETI 316

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
             + +R T  +  ++    + +   I     F++GFP E+ +D + T+    K+    A 
Sbjct: 317 NKIGKRITLEQAVKVFQWAKEI--GIDHVGSFVIGFPWESINDMKNTIKFAMKLNPTYAQ 374

Query: 364 SFKYSPRLGTPGS--NMLEQVDENVKAERLLCLQKKLREQQVSFNDAC 409
               +P  GTP     + + + E+   E    L+  ++  + +   A 
Sbjct: 375 FTVATPYPGTPLYQQALNDNLIEDWNWEHWTTLRAVMKGYRFTKEQAQ 422


>gi|220926895|ref|YP_002502197.1| hopanoid biosynthesis associated radical SAM protein HpnJ
           [Methylobacterium nodulans ORS 2060]
 gi|219951502|gb|ACL61894.1| hopanoid biosynthesis associated radical SAM protein HpnJ
           [Methylobacterium nodulans ORS 2060]
          Length = 479

 Score = 87.3 bits (215), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 62/345 (17%), Positives = 122/345 (35%), Gaps = 49/345 (14%)

Query: 54  ERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAE 113
           +      D DL+VL+T      +       +  +  LK +      +L   + G     +
Sbjct: 61  DVTAQAKDFDLVVLHT------SVPSFKQDVATVAALKAA----NPNLKAGLIGAKVAVD 110

Query: 114 GEEILRRSPIVNVVVGPQTYYRLPELLE------------RARFGKRVVDTDYSVEDKFE 161
            +  L ++P+++ V   +  +   E+ E            R   G  V + D  V    +
Sbjct: 111 AQGSLEKAPVIDFVARNEFDFTCKEVAEGRDLSQIKGLSYRNASGVIVHNEDRPVMMDMD 170

Query: 162 RLSIVDGGYNR----KRGVTAFLT---IQ----EGCDKFCTFCVVPYTRGIE--ISRSLS 208
           +L  V   Y R    +     +L    I      GC   CTFC+ P T G     +RS+ 
Sbjct: 171 QLPFVTSVYKRDLVMENYFIGYLKHPYISFYSGRGCKSRCTFCLWPQTVGGHTYRTRSVG 230

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
            V++E +  +           +          +  +         ++   G + + ++ +
Sbjct: 231 HVIEEIKYCL----KAFPQTKEFFFDDDTFTDNLPRA------EEIARELGKLGVTWSCN 280

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
              ++    +K   D    +  L +  +SG+ +IL ++ +        +       +   
Sbjct: 281 AKANVPRETLKVLRD--NGLRLLLVGYESGNQQILHNIKKGMRVEVAERFTKDCHDL--G 336

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
           IAI   FI+G PGET +  + T+    +I          +P  GT
Sbjct: 337 IAIHGTFILGLPGETKETIQETIKFATRINPHTIQVSLAAPYPGT 381


>gi|309791024|ref|ZP_07685561.1| Radical SAM domain protein [Oscillochloris trichoides DG6]
 gi|308226939|gb|EFO80630.1| Radical SAM domain protein [Oscillochloris trichoides DG6]
          Length = 513

 Score = 87.3 bits (215), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 53/303 (17%), Positives = 104/303 (34%), Gaps = 28/303 (9%)

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R   + +   + G    VV+ G       EE L      + VV  +      ++++   
Sbjct: 110 NRAYEIADEFRRHGKT--VVLGGVHVSFNYEEAL---EHADCVVSGEAENLWAKVIQDVA 164

Query: 145 FG---KRVVDTDYSVEDKFERLSIVDGGYNRKRGV-----TAFLTIQEGCDKFCTFCVVP 196
            G   +R    D+   ++   +         KRG      +  + +  GC   C+FCV P
Sbjct: 165 DGNLQRRYDSKDFPPVNEVPEIDYERIFRASKRGKVDARKSIPIYMTRGCPFVCSFCVTP 224

Query: 197 YTRGIE-ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG--EKCTFSDLLYS 253
              G     +S   +  +  +       E      N   +     +    K +  + +  
Sbjct: 225 NFTGRLYRIQSPEAIRRQVLEAKRVWFRESRY--GNTPWFMFTDENLGVNKQSMWETMEE 282

Query: 254 LSEIKGLVRLRYTTSHPRDM-SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR--H 310
           L+++        +     D  +  L+     +        +  +S +   LK+ N+   +
Sbjct: 283 LAKLNIRFSSFISLKFLDDAKTVDLL-----VKAGCAMALVGFESINQETLKAYNKGRIN 337

Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370
           TA +Y +II+  R     + I  +F+V    +T +D  ATM  V +           +P 
Sbjct: 338 TAADYARIIESCRKS--GLPIQCNFLVNPAIDTYEDMDATMKFVVENALVMPIYSILTPY 395

Query: 371 LGT 373
            GT
Sbjct: 396 PGT 398


>gi|187924183|ref|YP_001895825.1| hopanoid biosynthesis associated radical SAM protein HpnJ
           [Burkholderia phytofirmans PsJN]
 gi|187715377|gb|ACD16601.1| hopanoid biosynthesis associated radical SAM protein HpnJ
           [Burkholderia phytofirmans PsJN]
          Length = 473

 Score = 87.3 bits (215), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 59/307 (19%), Positives = 114/307 (37%), Gaps = 45/307 (14%)

Query: 95  IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE------------R 142
            K    +++ + G     +    L  S  ++ V   +  +   E+ E            R
Sbjct: 92  KKRKPSIVIGMVGAKVAVDPHNSLTASEAIDFVCREEFDFTCQEVAEGKPFAQIKGLSYR 151

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGV---------TAFLTI--QEGCDKFCT 191
              G    +    + +  + L  V   Y R   +           +++I    GC   CT
Sbjct: 152 NSDGSIEHNEARPILENMDELPFVAPVYKRDLKIDNYFIGYLKHPYVSIYTGRGCRSKCT 211

Query: 192 FCVVPYTRG--IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSD 249
           FC+ P T G     +RS+  V+ E +            +  N+   +    D +  TF+D
Sbjct: 212 FCLWPQTVGGHRYRTRSVENVLAEVK-----------WIRDNMPEVKEIMFDDD--TFTD 258

Query: 250 LLYSLSEIK---GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306
               + EI    G + + ++ +   ++    +K   +    +  L +  +SG D+IL ++
Sbjct: 259 FKPRVEEIARGLGKLGVTWSCNAKANVPYATLKIMKE--NGLRLLLVGYESGDDQILLNI 316

Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
            +       R+  +  R++   I I   FI+G PGET D  + T++   +I         
Sbjct: 317 KKGLRTDIARRFSNDCRTL--GIKIHGTFILGLPGETQDTIQKTIEYAKEINPHTIQVSL 374

Query: 367 YSPRLGT 373
            +P  GT
Sbjct: 375 AAPYPGT 381


>gi|332702810|ref|ZP_08422898.1| Radical SAM domain protein [Desulfovibrio africanus str. Walvis
           Bay]
 gi|332552959|gb|EGJ50003.1| Radical SAM domain protein [Desulfovibrio africanus str. Walvis
           Bay]
          Length = 497

 Score = 87.3 bits (215), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 54/321 (16%), Positives = 109/321 (33%), Gaps = 38/321 (11%)

Query: 62  ADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRS 121
           AD++ +    +++  A++    + R +      +  G                       
Sbjct: 66  ADMVFIGAMLVQKDGAQE---VIRRCKEAGKRIVAGGPAFT-------------SSPHLF 109

Query: 122 PIVNVVVGPQTYYRLPELLERARFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFL 180
           P V+ +V  +    LP  +     G+ + V T     D       +      K   T  +
Sbjct: 110 PGVDHLVLNEAEVTLPLFIRDLAAGEPKPVYTSDEKPDITRTPVPMWSLMKLKNYATMSV 169

Query: 181 TIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
               GC   C FC +    G    +++ +Q++ E   L   G      +  +        
Sbjct: 170 QFSRGCPFNCEFCDIIIMNGRVPRTKTPNQMLRELTSLRAAGWRGSVFIVDD-------N 222

Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRY------TTSHPRDMSDCLIKAHGDLDVLMPYLHL 293
             G K    + L +L   +      +      + +  +D     + +  +   +     L
Sbjct: 223 FIGNKDKVKEFLRALIAWQKEHHYPFKFLTEASLNLAQDEQLMTLMSMANFHKV----FL 278

Query: 294 PVQSGSDRILKSMNRR-HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352
            ++S S   LK  ++  +T  +  + +D I +    + + + FIVGF  +TD  F   MD
Sbjct: 279 GIESPSPESLKECSKHQNTVLDLSKAVDSIHA--HGLQVMAGFIVGFDSDTDKIFDIQMD 336

Query: 353 LVDKIGYAQAFSFKYSPRLGT 373
            + K+G   A     +   GT
Sbjct: 337 FIQKVGVVTAMVGVLTALPGT 357


>gi|4490579|emb|CAB38729.1| mg protoporphyrin IX monomethyl ester oxidative cyclase subunit
           [Rhodobacter sphaeroides]
          Length = 593

 Score = 86.9 bits (214), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 44/209 (21%), Positives = 77/209 (36%), Gaps = 11/209 (5%)

Query: 177 TAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLI-DNGVCEITLLGQNVNAW 235
                +  GC   C+FC           R   +VVDE  KL+ ++GV    L  +     
Sbjct: 195 VPIPNMARGCPFTCSFCSQWKFWRDYRVRDPKKVVDEIEKLVNEHGVGFFILADEEPTIN 254

Query: 236 RGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPV 295
           R K ++     F + + +      +     T          L+K +    ++  ++ L  
Sbjct: 255 RKKFIE-----FCEEMIARGLPDKVKWGINTRVTDVKRDKELLKFYRKAGLV--HISLGT 307

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
           ++ +   L   N+  T  E ++ I  +R    DI   + FIVG   ET +    T  +  
Sbjct: 308 EAAAQLKLDVFNKETTVAENKEAIRLLREA--DIFTEAQFIVGLDNETKETLEETYRMAW 365

Query: 356 KIGYAQAFSFKYSPRLGTPGS-NMLEQVD 383
                 A    Y+P   TP    + +QV+
Sbjct: 366 DWQPDLANWSMYTPWPFTPLFQELRDQVE 394


>gi|113478290|ref|YP_724351.1| radical SAM family protein [Trichodesmium erythraeum IMS101]
 gi|110169338|gb|ABG53878.1| Radical SAM [Trichodesmium erythraeum IMS101]
          Length = 476

 Score = 86.9 bits (214), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 66/361 (18%), Positives = 117/361 (32%), Gaps = 58/361 (16%)

Query: 53  YERVNS----MDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGC 108
           Y+ V        D +L++++T         K    +            +  +  +   G 
Sbjct: 57  YQTVEDVLKIAKDYELVIMHTSTPSLPNDIKCAEAI----------KNQNPETKIGFVGA 106

Query: 109 VAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK----RVVDTDYSVEDKFERLS 164
                 E+ L+  PI++ V   +  Y   EL +   F K       DT  ++    ER  
Sbjct: 107 HVAVLPEKTLKDHPIIDFVCRNEFDYTCKELSQGKPFAKIKGLSYYDTQGNIHHTPEREL 166

Query: 165 IVDG------------GYNRKRGVTAFLT-------IQEGCDKFCTFCVVPYTRGIEISR 205
           I D               N +  +  +L           GC   CTFC+ P T G    R
Sbjct: 167 IHDWDAMPSVFPVYAEHLNIRNYLIGYLLNPYISLYTGRGCPAKCTFCLWPQTIGGHQYR 226

Query: 206 --SLSQV---VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
             S   V   + EA+ +  + V E                        D   +++  + L
Sbjct: 227 AKSPEAVGREMAEAKAIWGSSVREYFFDDDTFT--------------IDKKRAIAISEHL 272

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            RL+ T S     +             +  L +  +SG+ +IL  +N+       R+ ++
Sbjct: 273 QRLKLTWSCNARGNLDYNTLKELKKNGLRLLLVGFESGNQKILDGVNKGIKLEVARKFME 332

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
               +   I +   FI+G P E+ +    T+    ++          SP  GT      E
Sbjct: 333 NCHKL--GIKVHGAFILGLPNESQETIEETIRFACEVNPHTIQVSIASPYPGTELYTQAE 390

Query: 381 Q 381
           +
Sbjct: 391 K 391


>gi|83645719|ref|YP_434154.1| Fe-S oxidoreductase [Hahella chejuensis KCTC 2396]
 gi|83633762|gb|ABC29729.1| Fe-S oxidoreductase [Hahella chejuensis KCTC 2396]
          Length = 563

 Score = 86.9 bits (214), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 48/233 (20%), Positives = 98/233 (42%), Gaps = 20/233 (8%)

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTI--QEGCDKFCTFCVVPYTRGIE 202
           F +  V+T+Y+  ++    + +D G      ++ F+++   + C   C FC  P   G  
Sbjct: 215 FSRTPVETEYNPLEE----NPIDYGLFPPEQLSQFISLRTAKSCPYSCAFCGFPQRAGAY 270

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            + +   V  E  ++   G         +   +     +  K  F ++L  +  I+    
Sbjct: 271 KTLAPDLVEQELDRIAALGN-------VDTLTFLDDTFNVPKKRFKEILRLM--IRKQYG 321

Query: 263 LRYTTSHPRDM-SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
            R+ + +  D      I+   +       + L ++SGSD +LK+MN+      + + I +
Sbjct: 322 FRWNSFYRSDQGDYETIQLMREAG--CEGVFLGIESGSDAMLKNMNKTARRRNFAEAIPQ 379

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
           +++    I+  +  IVGFPGET+D  R T  L+++       +  +     TP
Sbjct: 380 LQAA--GISAHASLIVGFPGETEDTIRETQSLIEQSKPDFYRAQLWYCDPLTP 430


>gi|193215815|ref|YP_001997014.1| radical SAM domain-containing protein [Chloroherpeton thalassium
           ATCC 35110]
 gi|193089292|gb|ACF14567.1| Radical SAM domain protein [Chloroherpeton thalassium ATCC 35110]
          Length = 470

 Score = 86.9 bits (214), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 50/288 (17%), Positives = 90/288 (31%), Gaps = 27/288 (9%)

Query: 93  SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDT 152
           +      ++ VV+ G       E         + +V  +      E+L     GK     
Sbjct: 102 AAQFRRKNMKVVLGGPHVSLFPE---TCIGKADALVVGEADEIWREVLSDLVSGKLKPKY 158

Query: 153 DYSVEDKFERLSIVDGGYNRKRGVTAF-----LTIQEGCDKFCTFCVVPYTRGI-EISRS 206
           +      F  L +          ++ +     +    GC   C FC V    G     R 
Sbjct: 159 EAK---TFPDLRLTPQVKKEVIQISDYFTTNLIQTSRGCPYQCDFCNVSLMNGRKIRHRP 215

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
           + QVV E    ++        +   +NA      D     F+ L      I   ++    
Sbjct: 216 VEQVVAEVASFLEKDQRVFFFVDDTINA----DPDYAFSLFNAL------IPYQIKWVGQ 265

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
            +        L++           L + ++  SD  L   N+ H +    Q++  I+++R
Sbjct: 266 ATTLIGRQKKLLEIFAKSG--CRGLLVGIEGLSDASLTLHNKTHNSPT--QLLSDIQAIR 321

Query: 327 P-DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
              I +   FI G  G+T       ++ V+K            P  GT
Sbjct: 322 DQGICVYGSFIYGLDGDTLRTADTLLNFVEKSNIDIPGINLLRPIPGT 369


>gi|86749195|ref|YP_485691.1| radical SAM binding protein [Rhodopseudomonas palustris HaA2]
 gi|86572223|gb|ABD06780.1| Radical SAM binding protein [Rhodopseudomonas palustris HaA2]
          Length = 598

 Score = 86.9 bits (214), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 64/332 (19%), Positives = 111/332 (33%), Gaps = 44/332 (13%)

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LG    L          L +V+ G +A A  +E+L     V+ VV  +    L  L +  
Sbjct: 111 LGNALVLARRLKAARPGLAIVLGGPLATALSQELLGTFAFVDYVVEGEGEAALSRLADAI 170

Query: 144 RFGKRVVDTDYSVE-----------------DKFERLSIVDGGYNRKRG---VTAFLTIQ 183
             G+   D                       D+    +       R RG    +A+LT  
Sbjct: 171 ERGEAPSDVPALAHRGPGGIVRNPRGAPLDLDRLPHPARDGLASIRARGLPAPSAYLTTS 230

Query: 184 EGCDKFCTFCVVPYTRGIEIS-----RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK 238
            GC  FCTFC VP +     S     R    VVDE  +L+ +       +  +     G+
Sbjct: 231 RGCKAFCTFCTVPGSVRSLKSGVYRMRDPVDVVDEIEELVRDHGVSRFYMADDNFLGYGE 290

Query: 239 GLDGEKCTFSD--LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQ 296
             +     F+D  L   L+         +  +  R  S                +   ++
Sbjct: 291 DSNARMHRFADEILRRRLA--------IHFHAECRVDSLIPETLVRLRAAGFDQILFGLE 342

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETD-DDFRATMDLVD 355
           SGS R LK   +  T  +    I   R +R ++  S   ++    E+D  +   T+  ++
Sbjct: 343 SGSARTLKRWAKGQTVAQNEAAIALARRLRIEMMPS---LILLDWESDLSEIEETIGFIE 399

Query: 356 KIGYAQAF--SFKYSPRL---GTPGSNMLEQV 382
           +    ++    +  +      GT  +   + V
Sbjct: 400 RNQLWRSGQPLWLVNKLKVHCGTAAARRYDSV 431


>gi|172039008|ref|YP_001805509.1| hypothetical protein cce_4095 [Cyanothece sp. ATCC 51142]
 gi|171700462|gb|ACB53443.1| unknown [Cyanothece sp. ATCC 51142]
          Length = 478

 Score = 86.9 bits (214), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 59/357 (16%), Positives = 114/357 (31%), Gaps = 58/357 (16%)

Query: 53  YERVNS----MDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGC 108
           Y+ V        D +L+++ T         K    +            +     V + G 
Sbjct: 57  YQTVEDVLKIAKDYELVIMYTSTPTLPNDVKCAEAIKA----------QNPHTQVGLLGA 106

Query: 109 VAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE------------RARFGKRVVDTDYSV 156
            A     E L  +P+++ V   +  Y   EL E            R +FG      +  +
Sbjct: 107 HAAVLPTETLEENPVIDFVCRNEFDYTCKELAEGKPYEAIKGLSYRDKFGNIKHTEEREL 166

Query: 157 EDKFERLSIVDGGYNRKRGVTAFLT-----------IQEGCDKFCTFCVVPYTRGIEISR 205
              ++ +  V   Y +      +                GC   CTFC+ P T G    R
Sbjct: 167 IHDWDSMPSVFPMYEKHLNFRNYFIGYLLHPYVSLYTGRGCPAKCTFCLWPQTIGGHQYR 226

Query: 206 --SLSQV---VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
             S   V   +  A+ +  N V E           + + +            ++SE    
Sbjct: 227 AKSPEAVGKEMALAKSIWGNSVREYFFDDDTFTIDKKRVI------------AISEHLKK 274

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
           + L ++ +   ++    +K   D    +  L +  +SG+  +L  + +       R+ ++
Sbjct: 275 LNLTWSCNARANLDYDTLKTLRD--NGLRLLLVGFESGNQGVLDGVKKGIKLEVARKFMN 332

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
               +   I +   FI+G P E+ +    T+    ++          SP  GT    
Sbjct: 333 NCNKL--GIKVHGAFILGLPNESKETIEDTIRFACEVSPHTIQVSIASPYPGTELYK 387


>gi|320100796|ref|YP_004176388.1| Radical SAM domain-containing protein [Desulfurococcus mucosus DSM
           2162]
 gi|319753148|gb|ADV64906.1| Radical SAM domain protein [Desulfurococcus mucosus DSM 2162]
          Length = 493

 Score = 86.9 bits (214), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 54/311 (17%), Positives = 124/311 (39%), Gaps = 25/311 (8%)

Query: 74  EKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPI-VNVVVGPQT 132
           E    + +  L     ++ ++ K    + ++  G  A     E+       V+ VV  + 
Sbjct: 106 EPVNRRSFIRLMESPAVRRAKEK---GVKIIAGGPAAWQWLYELELMEKWGVDTVVDGEG 162

Query: 133 YYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTF 192
              + EL+E+A   +++    Y      +   + +    +   V   + +  GC + C F
Sbjct: 163 EKIVVELVEKALRNEKL--PRYVYVGVGDVPGVDEIPVIKGASVNGLVEVMRGCPRGCKF 220

Query: 193 CVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL----DGEKCTFS 248
           C V           L +++ E    I  G+  I L  ++V  +   G+    D       
Sbjct: 221 CSVTL--RPLRFIPLEKILAEVDVNIRAGLKGIILHSEDVLLYHADGVKPRADPVVKLHV 278

Query: 249 DLLYSLSEIKGLVRLRYTTSHPR--DMSDCLIKAHGDLDVLMPY-----LHLPVQSGSDR 301
           ++L  + E + L     + +  +  + +  LI    +  VL  +     + + +++GS R
Sbjct: 279 EVLKRIGERRSLAWSHASLAAVKYAEENYRLISRLMNELVLNEHRKFLGVEVGIETGSVR 338

Query: 302 ----ILKSMNRRHTAYEYRQIIDRIRSVRPD--IAISSDFIVGFPGETDDDFRATMDLVD 355
               I+++    +   E+  I++    +  +  +  ++  I+GFPGET DD   T++L++
Sbjct: 339 LAREIMRAKASPYPVEEWPNIVEDAFRIMHENKVIPAATVILGFPGETPDDVVETIELIE 398

Query: 356 KIGYAQAFSFK 366
           ++   ++    
Sbjct: 399 RLKPYRSIIVP 409


>gi|39934738|ref|NP_947014.1| magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative
           cyclase [Rhodopseudomonas palustris CGA009]
 gi|192290260|ref|YP_001990865.1| magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative
           cyclase [Rhodopseudomonas palustris TIE-1]
 gi|39648588|emb|CAE27109.1| Mg-protoporphyrin IX monomethyl ester oxidative cyclase 66kD
           subunit [Rhodopseudomonas palustris CGA009]
 gi|192284009|gb|ACF00390.1| magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative
           cyclase [Rhodopseudomonas palustris TIE-1]
          Length = 565

 Score = 86.9 bits (214), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 57/388 (14%), Positives = 127/388 (32%), Gaps = 64/388 (16%)

Query: 43  RMEDMFFSQGY----------ERVNSMDDADLI------VLNTCHIREKAAEKVYSFLGR 86
            +     + G+          E +++   A +I      ++    I           +  
Sbjct: 28  YLAGALKANGFADIKFVDAMTEEISNEGLAKIISDYQPDLVGATSITPS--------IYA 79

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
                    +    ++ ++ G  A    +++L  +P V+V+V  +    + EL      G
Sbjct: 80  AEEALKVAKQVNPKIVTMLGGVHATFMYQQVLSEAPWVDVIVRGEGEEIVVELARAVASG 139

Query: 147 KRVVD--------------------------TDYSVEDKFERLSIVDGGYNRKRGVTAFL 180
               +                          T   ++       +++    R   +   +
Sbjct: 140 NWPANRSEIKGLAYTEGSNGESQIVATAAAPTVKDLDAIKPDWGVLNWNLYRYIPMNTRV 199

Query: 181 TI---QEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWR 236
            I     GC   C+FC           R   +VVDE ++L++   V    L  +     R
Sbjct: 200 AIPNMARGCPFTCSFCSQWKFWRDYRVRDPKKVVDEIQELVEKYDVGFFILADEEPTINR 259

Query: 237 GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQ 296
            K +   +   +  L    +++  +  R T     +    L+K + +  ++  ++ L  +
Sbjct: 260 KKFIQFCEELIARGLNK--KVQWGINTRVTDILRDE---QLLKFYNEAGLM--HVSLGTE 312

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
           + +   L   N+     + ++ I  +R     I + + FIVG   ET +    T  +   
Sbjct: 313 AAAQLKLDLFNKETKISDNKKAIRLLREA--GIVVEAQFIVGLDSETPETLEETYRMAMD 370

Query: 357 IGYAQAFSFKYSPRLGTPGSN-MLEQVD 383
                A    Y+P   TP    + ++V+
Sbjct: 371 WKPDLANWSMYTPWPFTPLFKELSDKVE 398


>gi|330508562|ref|YP_004384990.1| Radical SAM domain/B12 binding domain-containing protein
           [Methanosaeta concilii GP-6]
 gi|328929370|gb|AEB69172.1| Radical SAM domain/B12 binding domain protein [Methanosaeta
           concilii GP-6]
          Length = 411

 Score = 86.9 bits (214), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 51/296 (17%), Positives = 103/296 (34%), Gaps = 39/296 (13%)

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVV---GPQTYYRLPELLERA 143
             ++  +      ++ +V  G  A     ++L   P V++VV   G +    + + L+R 
Sbjct: 47  AVDIAKAAKSHNPNIKIVFGGVHATFIHRDVLHTIPEVDIVVRYEGERAICEICDALDRG 106

Query: 144 RF--------------------GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQ 183
           R                       R+ + D      F  L      Y  +     F  I 
Sbjct: 107 RKLENVKGISFRHDNRVFSTPLRHRIENLDSIPFPAFHLLEPSIEHYIGEGKEKGFPIIT 166

Query: 184 -EGCDKFCTFCVVPYTRGI-EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD 241
             GC   C FC      G    +RS + V+DE   + D           NV ++      
Sbjct: 167 TRGCPFNCIFCSTAALHGRKYRTRSANNVLDEMEFVQDK-------YKINVISFADDNFT 219

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM-SDCLIKAHGDLDVLMPYLHLPVQSGSD 300
            ++    +L   + E    +   +  S   D+ S  L++           +   ++S S 
Sbjct: 220 MKRNRVIELCRGIKE--RHLDFEWGCSARVDLLSKDLLEVMNSSG--CKNIFFGIESASQ 275

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
           R+L ++ +  +  + ++++ ++      I     FI+G P ET +     +  V++
Sbjct: 276 RVLDTVKKGFSIEKAKEMV-KLTEKM-GIKTHCSFILGLPNETVESIDEMIRFVEE 329


>gi|218676033|ref|YP_002394852.1| Radical SAM [Vibrio splendidus LGP32]
 gi|218324301|emb|CAV25623.1| Radical SAM [Vibrio splendidus LGP32]
          Length = 403

 Score = 86.9 bits (214), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 61/330 (18%), Positives = 105/330 (31%), Gaps = 34/330 (10%)

Query: 56  VNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGE 115
            +  +DADL+V+              S     R  + +   +     V+  G   Q    
Sbjct: 52  ADLYNDADLVVI------------FMSTPDAYRAYELASKYKKKGKTVIFGGLHTQFNPS 99

Query: 116 EILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRG 175
           E        + +   +      +LL  A FG      + S       L+           
Sbjct: 100 EAAV---YADCLAMGEVENYWVQLLRDAEFGSLQPIYESSEPVDLSMLNPYPTNIINPEA 156

Query: 176 VTA--FLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVN 233
                 + +  GC   C FC+VP        R +  +V E   L   G+  + L   N+ 
Sbjct: 157 YNYTWSVVVTRGCPFKCNFCLVPRFFDKFQKRPIENIVSELADLKTLGIEWVELHSDNLT 216

Query: 234 AWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT-TSHPRDMSDCLIKAHGDLDVLMPYLH 292
             R   L   K            I+ L    Y  T+        L+     +      + 
Sbjct: 217 HDREYALALFKA-----------IEPLNMSFYGETTVLIARDTELLS--AAVKSGFKAVL 263

Query: 293 LPVQSGSDRILKSMNRRH-TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351
           L +++ S+  LK+  +      + ++ I  IR+    I +  DF+ GF       F+ T 
Sbjct: 264 LGIETPSEEALKAQKKGFVKPSKMKEYIAEIRT--HGIEVWGDFLFGFDEHDTSIFKQTQ 321

Query: 352 DLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
             V+ I   +       P  G+   N LE+
Sbjct: 322 KFVEDIKVDKVIPHYMIPFPGSESFNQLER 351


>gi|309789573|ref|ZP_07684154.1| magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative
           cyclase [Oscillochloris trichoides DG6]
 gi|308228309|gb|EFO81956.1| magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative
           cyclase [Oscillochloris trichoides DG6]
          Length = 554

 Score = 86.9 bits (214), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 58/383 (15%), Positives = 121/383 (31%), Gaps = 52/383 (13%)

Query: 43  RMEDMFFSQGYERVNSMDD----------ADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92
            +     S GYE V  +D            ++I +N   +    A  +   + + +    
Sbjct: 28  YIGGALKSAGYENVRFIDAMTFHIENDKLREIIRINKPDVIMATA--ITPMILKAQETLR 85

Query: 93  SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVD- 151
              +E  +  +++ G  A     ++   +P ++ +V  +    + EL+     G  + D 
Sbjct: 86  IAREERPNARLILGGIHATFMYTQVFSEAPWIDYIVRGEAEEIIVELIRSIEAGSDLKDR 145

Query: 152 ---------TDYSVEDKFERLSIVD---------------GGYNRKRGVTAFLTIQEGCD 187
                     D  V        I D                 Y       A      GC 
Sbjct: 146 ANIKGIAYLEDGKVVATPAADPIADLDQLAPDWSLLEWDKYIYVPMNVRVAVPNFARGCP 205

Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTF 247
             C FC          +R+  + VDE   L+ +      +L         +     +  F
Sbjct: 206 FTCRFCSQWKFWRRYRARNPMKFVDEVETLVRDHKVGFFILAD-------EEPTLNRKKF 258

Query: 248 SDLLYSLSEIK-GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306
           + L   L++ K  ++    T          L+       ++  ++ L  ++ +   L+  
Sbjct: 259 TALCEELAKRKLPVLWGINTRVTDIMRDKALLPLWRKAGLI--HISLGTEAAAQMNLEIF 316

Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
            ++ T  + ++ I  I+     +   + FI+G   ET +    T           A    
Sbjct: 317 RKQTTIDQNKEAIKLIQDA--GMVAEAQFIMGMEAETPETIEETYQYARDWKVDMANWNM 374

Query: 367 YSPRLGTPGSNMLEQVDENVKAE 389
           Y+P    P + + E + + V+  
Sbjct: 375 YTPW---PFAELFEDLGDRVEVR 394


>gi|52549553|gb|AAU83402.1| Fe-S oxidoreductase [uncultured archaeon GZfos27G5]
          Length = 554

 Score = 86.9 bits (214), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 50/274 (18%), Positives = 112/274 (40%), Gaps = 22/274 (8%)

Query: 99  GDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVED 158
            +  VV  G  A    +E       ++ V   +    +PE+ +    G+++       E 
Sbjct: 150 REKTVVAGGKAAWQLADETTMNKLNIDYVHLGEGEITVPEMFQSILAGEKLPRIIKGKEP 209

Query: 159 KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLI 218
             + +  + G       +   + I  GC + C+FC  P  +     +S+  +  + +  I
Sbjct: 210 NADEIPNIIGAT-----IHGLVEISRGCGRGCSFC-TPSMQ-RLRFQSVEHIAKDVKTNI 262

Query: 219 DNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS--HPRDMSDC 276
           + G   I+L  ++V  +  +G+  ++    +L   ++ I+G+ R+  +         +  
Sbjct: 263 EAGQRSISLHSEDVLRYGARGIAPDEERVMNLFRRVASIEGIARIGASHIALATVYHNPD 322

Query: 277 LIKAHGD-----LDVLMPYLHLPVQSGSDRILKSMNRRHTA-----YEYRQIIDRIRSVR 326
           L+KA  +     LD         +++GS   L + + R  A      ++++I+ +   + 
Sbjct: 323 LLKAVSETCYSMLDQNWLGAQTGIETGS-ARLIAKHMRGKALPSPPEKWQEIVTQAFGLL 381

Query: 327 PD--IAISSDFIVGFPGETDDDFRATMDLVDKIG 358
            D     ++  I G PGE  DD   +++LV+ + 
Sbjct: 382 DDNNWFNAATMINGLPGENTDDVVESIELVEDLK 415


>gi|52549566|gb|AAU83415.1| Fe-S oxidoreductase [uncultured archaeon GZfos28B8]
          Length = 542

 Score = 86.9 bits (214), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 51/295 (17%), Positives = 118/295 (40%), Gaps = 26/295 (8%)

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            L    +L ++   +     ++V G  A       ++    ++ V+  Q    L +++ +
Sbjct: 140 TLVEFEDLLSNPALKKYRAKIIVGGSGAWQISSANMQDKLGIDTVLIGQAENSLLQIVRK 199

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           A  G+++           + + I+     +K  +   + I  GC + C FC  P  R   
Sbjct: 200 ALNGEKLDKVITMQIPVDKEIPII-----KKPSIYGTVEITRGCGRGCAFCS-PTLRQRY 253

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG-LDGEKCTFSDLLYSLSEIKGLV 261
            S  L  ++ E      +G   I L   +V  ++ K      +     L+  + +I G+ 
Sbjct: 254 -SFPLEHILREVELNAKSGTRAILLQTDDVFLYKSKPNFIPNREAIVKLIQDIDKIGGVD 312

Query: 262 RLRYTTSH----------PRDMSDCLIK--AHGDLDVLMPYLHLPVQSGSDRILKSMNR- 308
            ++   +             +++  L++       D     + + +++GS ++++   R 
Sbjct: 313 YIQIAHASLAPVVYDRKIVEEIAPILVEKSLWRCNDKRCASIEVGIETGSAQLMEKYMRG 372

Query: 309 ---RHTAYEYRQIIDRIRSVRPD--IAISSDFIVGFPGETDDDFRATMDLVDKIG 358
               +   +++ I+ +   V  D  I   +  I+G PGE ++D  AT++L+DK+ 
Sbjct: 373 KMLPYKPEQWQDIVVQSIGVLNDNGIHPLATLILGLPGEQEEDILATINLLDKLK 427


>gi|39937565|ref|NP_949841.1| Elongator protein 3/MiaB/NifB [Rhodopseudomonas palustris CGA009]
 gi|39651424|emb|CAE29947.1| Elongator protein 3/MiaB/NifB [Rhodopseudomonas palustris CGA009]
          Length = 594

 Score = 86.5 bits (213), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 48/280 (17%), Positives = 100/280 (35%), Gaps = 23/280 (8%)

Query: 105 VAGCVAQAEGEEI---LRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFE 161
           V+GC+A  +G+ I     R   V +  G     R   +L+ A  G+     ++  +    
Sbjct: 129 VSGCLAMLDGKAIGLDDCRDMGVAMFAGEAEGGRFDGVLQDAAAGQLQPVYNFLNDLPGI 188

Query: 162 RLSIVDG----GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI-EISRSLSQVVDEARK 216
                         R  G++  +    GC   C+FC +   +G     R+   +    R+
Sbjct: 189 EGVPAPYLPLATVKRTLGLSTSVDAGRGCPYQCSFCTIINVQGRKSRYRTPDDIEAMVRR 248

Query: 217 LIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDC 276
               G+ +  +   N    +          +  +L  L +I+    +        D    
Sbjct: 249 NWAQGISKYFITDDNFARNK---------DWEAILDRLIQIRETEDIPLGFMIQVDTLCH 299

Query: 277 LIKAHGDLDV--LMPYLHLPVQSGSDRILKSMNRRHTA-YEYRQIIDRIRSVRPDIAISS 333
            I    +      +  + + +++ +   L + N+R     EYR ++   +     I   +
Sbjct: 300 KIPRFIEKAKRAGVTRVFIGLENINPANLLTANKRQNKITEYRAMLLAWKD--HGIITLA 357

Query: 334 DFIVGFPGETDDDFRATMDLVD-KIGYAQAFSFKYSPRLG 372
            +I+GFP +T    RA +D++  ++       F  +P  G
Sbjct: 358 GYILGFPADTPASIRADIDIIKRELPIDVMEFFCLTPLPG 397


>gi|219852229|ref|YP_002466661.1| Radical SAM domain protein [Methanosphaerula palustris E1-9c]
 gi|219546488|gb|ACL16938.1| Radical SAM domain protein [Methanosphaerula palustris E1-9c]
          Length = 444

 Score = 86.5 bits (213), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 39/195 (20%), Positives = 69/195 (35%), Gaps = 13/195 (6%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
           L I  GC   C FC  P    +     L +V  E  +++  G   + +         G  
Sbjct: 209 LIITRGCPFACDFCSKPVWGDVFRKPPLERVFQEIEEIMALGYDGLWIADDCFTLDTGY- 267

Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
                   +     +   +G        S    ++  L+        +  Y  L ++SGS
Sbjct: 268 -------LARFCEEMIR-RGSPIAWTCLSRVDRLTPDLVDLMKRAGCIRVY--LGLESGS 317

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
           D  L+ M ++ T  +  + +         +  +  F+VG+PGET +    T  L   +  
Sbjct: 318 DETLRLMKKKVTVEQGVRAVHLFSQA--GVGTAGFFMVGYPGETVESIEKTFALSLSLPL 375

Query: 360 AQAFSFKYSPRLGTP 374
            +A+     P  GTP
Sbjct: 376 DEAWFTVPLPLPGTP 390


>gi|192293358|ref|YP_001993963.1| radical SAM domain protein [Rhodopseudomonas palustris TIE-1]
 gi|192287107|gb|ACF03488.1| Radical SAM domain protein [Rhodopseudomonas palustris TIE-1]
          Length = 591

 Score = 86.5 bits (213), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 48/280 (17%), Positives = 100/280 (35%), Gaps = 23/280 (8%)

Query: 105 VAGCVAQAEGEEI---LRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFE 161
           V+GC+A  +G+ I     R   V +  G     R   +L+ A  G+     ++  +    
Sbjct: 126 VSGCLAMLDGKAIGLDDCRDMGVAMFAGEAEGGRFDGVLQDAAAGQLQPVYNFLNDLPGI 185

Query: 162 RLSIVDG----GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI-EISRSLSQVVDEARK 216
                         R  G++  +    GC   C+FC +   +G     R+   +    R+
Sbjct: 186 EGVPAPYLPLATVKRTLGLSTSVDAGRGCPYQCSFCTIINVQGRKSRYRTPDDIEAMVRR 245

Query: 217 LIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDC 276
               G+ +  +   N    +          +  +L  L +I+    +        D    
Sbjct: 246 NWAQGISKYFITDDNFARNK---------DWEAILDRLIQIRETEDIPLGFMIQVDTLCH 296

Query: 277 LIKAHGDLDV--LMPYLHLPVQSGSDRILKSMNRRHTA-YEYRQIIDRIRSVRPDIAISS 333
            I    +      +  + + +++ +   L + N+R     EYR ++   +     I   +
Sbjct: 297 KIPRFIEKAKRAGVTRVFIGLENINPANLLTANKRQNKITEYRAMLLAWKD--HGIITLA 354

Query: 334 DFIVGFPGETDDDFRATMDLVD-KIGYAQAFSFKYSPRLG 372
            +I+GFP +T    RA +D++  ++       F  +P  G
Sbjct: 355 GYILGFPADTPASIRADIDIIKRELPIDVMEFFCLTPLPG 394


>gi|148265635|ref|YP_001232341.1| radical SAM domain-containing protein [Geobacter uraniireducens
           Rf4]
 gi|146399135|gb|ABQ27768.1| Radical SAM domain protein [Geobacter uraniireducens Rf4]
          Length = 451

 Score = 86.5 bits (213), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 67/389 (17%), Positives = 126/389 (32%), Gaps = 68/389 (17%)

Query: 43  RMEDMFFSQGYER-VNSMD-DADLIVLNTCHIREKAAE-----KVYSFLGRIRNLKNSRI 95
            +       G+   V  +  + D +    C    KAA+        + + +   +     
Sbjct: 28  YIAACLEQAGHTVQVKDLQIEPDGL----CAFDVKAADLVGITSDTTRIEKAMLIARQAA 83

Query: 96  KEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA------------ 143
             G    VV+ G   Q   +EIL R+  V  ++  +     P L+E              
Sbjct: 84  ALGRP--VVMGGPHPQFMADEIL-RTGHVQYIIKGEGELTFPRLVEALERREEPAAVDGI 140

Query: 144 --RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTA--------FLTIQEGCDKFCTFC 193
             R GK +V+T        E L +           +A         +    GC   C+FC
Sbjct: 141 IFRDGKTLVETPNGATPDVELLPLPARHLLDLNRYSAVVDGVLLTPVVTSRGCPGGCSFC 200

Query: 194 VVPYTRGI-EISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFSDLL 251
                 G    SRS   V+ E  ++    G   +  +  N               FS   
Sbjct: 201 SSSNFFGRGWRSRSPESVLAELDEVYTRYGFRAVAFVDDN---------------FSLSP 245

Query: 252 YSLSEIKGLVRLR--------YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
             +  I   +R R        ++       +  +++A          + L ++S     L
Sbjct: 246 ERVIGIAEGIRERGFDLKWWNFSRVDTIVRNPQMVRAMSAAG--AKTIFLGIESAGAEAL 303

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           + + ++    E    +  ++     I +   +I+G   E+  D   T+DL  K+      
Sbjct: 304 QMLGKKGQGDETAAAVKLLQEN--GIEVFGSYILGHLNESRKDIERTIDLAVKL---NTN 358

Query: 364 SFKYSPRLGTPGSNMLEQVDENVKAERLL 392
             ++S     PG+ + E+V E +  +R  
Sbjct: 359 VAQFSILTPYPGTALYEEVKERIFVKRWK 387


>gi|126466398|ref|YP_001041507.1| radical SAM domain-containing protein [Staphylothermus marinus F1]
 gi|126015221|gb|ABN70599.1| Radical SAM domain protein [Staphylothermus marinus F1]
          Length = 507

 Score = 86.5 bits (213), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 53/294 (18%), Positives = 114/294 (38%), Gaps = 30/294 (10%)

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPI-VNVVVGPQTYYRLPELLERARF 145
           IR  K   +K      ++  G  A     E+       V+ V+  +    + +L+++A  
Sbjct: 135 IRKAKEKGVK------IIAGGPAAWQWLWELELWRKWGVDTVIDGEVEKVIVDLVDKALN 188

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            + +   DY      +  SI +    +   +   + I  GC + C FC V          
Sbjct: 189 NEPL--PDYIYVGPRDAPSIEEIPIIKAPSINGLIEIMRGCPRGCKFCSVTL--RPLRYM 244

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            L ++ +E R  +  G   + L  ++V  +   G+        +L  ++ E  G  +  +
Sbjct: 245 PLERIREEIRINLRGGTKGVILHSEDVLLYGADGVKPRPEPLINLHKTVFEELGEKK-EF 303

Query: 266 TTSHPR-------DMSDCLIKAHGDLDVLMPY-----LHLPVQSGSDRILKSMN----RR 309
             SH         +    L+    +  +L  +     + + +++GS R+ K +       
Sbjct: 304 AWSHASLAAIKYAEDEYGLVSKLMNEYILSDHRRFLGVEVGIETGSPRLAKIIMPAKAAP 363

Query: 310 HTAYEYRQIIDRIRSVRPD--IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
           + A ++  I++    +  +  I  ++  I+G P ET DD   T +L+D++   +
Sbjct: 364 YPAEKWPDIVEDAFRIMHENKIIPAATLILGLPQETPDDVVKTAELIDRLKPYR 417


>gi|149922352|ref|ZP_01910787.1| oxygen-independent coproporphyrinogen III oxidase family protein,
           putative [Plesiocystis pacifica SIR-1]
 gi|149816802|gb|EDM76291.1| oxygen-independent coproporphyrinogen III oxidase family protein,
           putative [Plesiocystis pacifica SIR-1]
          Length = 533

 Score = 86.5 bits (213), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 53/302 (17%), Positives = 103/302 (34%), Gaps = 14/302 (4%)

Query: 77  AEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL 136
            E+  + +  +R +          L++VV G     E +E       V+ V+  +     
Sbjct: 84  VEETRALVELLRRVDTGAETGARKLVIVVGGPEVSHELDE-QPWLAQVDYVITGEGDRAF 142

Query: 137 PELLERARFGKR----VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTF 192
           PEL  R   G+R    V+D      D       +   ++    V  ++    GC   C F
Sbjct: 143 PELCARLLDGRRPLTRVLDGGLPDLDSLTLPYALYTDHDLSHRVV-YVEASRGCPYRCEF 201

Query: 193 CVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLY 252
           C+         +  L  ++ E   L++ G   +  + +  N      +   +      L 
Sbjct: 202 CL-SSLDKKVRAFPLEALLGEFDSLLERGARHLKFVDRTFNL----DIARSRAILEHFLA 256

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
            L     L            + + L +             + +Q+  D + + ++RR   
Sbjct: 257 RLERYPELFLHFELVPDR--LPEELRELIARFPPGSLQFEVGIQTLDDAVGRRISRRQRV 314

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
                 ++ +R  R  + + +D I+G PGE  + F A +D +   G  +          G
Sbjct: 315 DRTFANLEFLRE-RAHVHLHTDLIIGLPGEDLEGFGAGLDRLIAAGVQEVQVGVLKRLRG 373

Query: 373 TP 374
           TP
Sbjct: 374 TP 375


>gi|153813390|ref|ZP_01966058.1| hypothetical protein RUMOBE_03809 [Ruminococcus obeum ATCC 29174]
 gi|149830567|gb|EDM85658.1| hypothetical protein RUMOBE_03809 [Ruminococcus obeum ATCC 29174]
          Length = 128

 Score = 86.5 bits (213), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 50/92 (54%), Gaps = 5/92 (5%)

Query: 13  MVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHI 72
           + +Q  +    P  + + ++GCQMN   S  +  +    GY R ++ ++AD+++ NTC +
Sbjct: 29  LTAQKSNTLGRPLTYCLTTFGCQMNEKQSEAVAGIMDEIGYHRQDN-EEADVVIYNTCTV 87

Query: 73  REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVV 104
           RE A  KVY  LG + +LK+       D+ ++
Sbjct: 88  RENANLKVYGRLGHLHSLKD----HNPDMKII 115


>gi|110598221|ref|ZP_01386497.1| Radical SAM [Chlorobium ferrooxidans DSM 13031]
 gi|110340136|gb|EAT58635.1| Radical SAM [Chlorobium ferrooxidans DSM 13031]
          Length = 469

 Score = 86.5 bits (213), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 58/334 (17%), Positives = 102/334 (30%), Gaps = 34/334 (10%)

Query: 49  FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGC 108
              G      +   D++ + +              L   +  +           V++ G 
Sbjct: 79  ERLGNSVPEDLSGFDVVAITS------------RTLNATKAYRIGDAALRQGKTVILGGV 126

Query: 109 VAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDG 168
                 +E       V  V G +      EL      GK               +   D 
Sbjct: 127 HPTMLHDEAAAHCTSV--VYG-EIESIWTELATDVLTGKMKPIYRAKELKPMGSMIHPDF 183

Query: 169 GYNRKRG----VTAFLTI--QEGCDKFCTFCVVPYTRGI-EISRSLSQVVDEARKLIDNG 221
            Y          ++ + I   +GC   C FC  P   G     R L  V+DE R      
Sbjct: 184 SYALTSPSAKKYSSLIPILATKGCPVGCNFCTTPTIYGKNYRYRELDLVLDEMRYHQKRL 243

Query: 222 VCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAH 281
             E      N  ++    +      F  LL  ++++ G+      + +  D  +    A 
Sbjct: 244 NKE----KINF-SFMDDNISFRPQYFMTLLEEMAKL-GVHWNANISMNFLDKPEV---AE 294

Query: 282 GDLDVLMPYLHLPVQSGSDRILKSMNRRHTA-YEYRQIIDRIRSVRPDIAISSDFIVGFP 340
                    L +  +S +   LKS+++       Y  ++  +      IAI   F+ GF 
Sbjct: 295 LAGRSGCDLLSIGFESLNPETLKSVHKGSNRLGNYETVVSNLHKN--GIAIQGYFMFGFD 352

Query: 341 GETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
            +T++ F+ T D + K           +P  GTP
Sbjct: 353 NDTEESFQLTYDFIMKNRIEFPVFSLVTPFPGTP 386


>gi|159045177|ref|YP_001533971.1| putative anaerobic magnesium-protoporphyrin IX monomethyl ester
           [oxidative] cyclase [Dinoroseobacter shibae DFL 12]
 gi|157912937|gb|ABV94370.1| putative anaerobic magnesium-protoporphyrin IX monomethyl ester
           [oxidative] cyclase [Dinoroseobacter shibae DFL 12]
          Length = 547

 Score = 86.5 bits (213), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 59/293 (20%), Positives = 110/293 (37%), Gaps = 30/293 (10%)

Query: 98  GGDLLVVVAGCVAQAEGEEILRRSPIV-----NVVVGPQTYYRLPELLERARFGKRVVDT 152
           G +++V +A CVA+    E  R+   +     + +V  Q    + +L          ++ 
Sbjct: 125 GEEIMVELARCVAEGRWPEDQRKIKGLAFREGDQIVATQAASTVKDLDG--------INP 176

Query: 153 DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVD 212
           D+S+ +  + + +  G         A   +  GC   C+FC           R   +VVD
Sbjct: 177 DWSLLEWDKYIYVPLGVK------VAIPNMARGCPFTCSFCSQWKFWRDYRVRDPIKVVD 230

Query: 213 EARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPR 271
           E   L+DN GV    L  +     R K +   +   +  L    +I+  +  R T     
Sbjct: 231 EIENLVDNHGVGFFILADEEPTINRRKFIQFCEELIARGLPE--KIQWGINTRVTDIMR- 287

Query: 272 DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAI 331
                L+  +    ++  ++ L  ++ +   L   N+     E ++ I  +R    DI  
Sbjct: 288 --DKELLPLYRKAGLV--HVSLGTEAAAQLKLDQFNKETKVEENKEAIRLLREA--DIFT 341

Query: 332 SSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQVD 383
            + FIVG   ET +    T  +        A    Y+P   TP    + ++V+
Sbjct: 342 EAQFIVGLDNETAETLEETFQMAWDWQPDLANWAMYTPWPFTPLFQELGDKVE 394


>gi|255022191|ref|ZP_05294193.1| hopanoid biosynthesis associated radical SAM protein HpnJ
           [Acidithiobacillus caldus ATCC 51756]
 gi|254968373|gb|EET25933.1| hopanoid biosynthesis associated radical SAM protein HpnJ
           [Acidithiobacillus caldus ATCC 51756]
          Length = 475

 Score = 86.5 bits (213), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 57/314 (18%), Positives = 113/314 (35%), Gaps = 39/314 (12%)

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE------- 141
            +  +       + + + G     E E  L+ SP ++ V   +  Y L E+ E       
Sbjct: 88  RMAETLKAHYPQMQIGLVGAKVAVEPETSLQASPAIDFVAREEFDYTLKEIAEGRPLAEV 147

Query: 142 -----RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLT-----------IQEG 185
                R   G+   + D ++ +  + L  V   Y R   +  +                G
Sbjct: 148 DGIHYRDADGRIHGNPDRAMIEDMDALPFVSEVYKRDLRIEDYFIGYLKHPYVSFYTGRG 207

Query: 186 CDKFCTFCVVPYTRG--IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
           C   CTFC+ P T G     +RS + V++E R  I     ++  +      +       +
Sbjct: 208 CRSQCTFCLWPQTVGGHRYRTRSAANVLEEVR-YIQKQFPQVQEI-----FFDDDTFTDD 261

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
           +    ++   L ++     + ++ +   ++    +K   D    +  L +  +SG  +IL
Sbjct: 262 RPRAEEIARGLGKLG----VTWSCNAKANVPYETLKVLRD--NGLRLLLVGYESGDQQIL 315

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
            ++ +       R+       +   I I   FI+G PGET +  + T++   +I      
Sbjct: 316 NNIKKGLKVEAARKFTKDCHEL--GITIHGTFILGLPGETRETIQKTINFAKEINPHTIQ 373

Query: 364 SFKYSPRLGTPGSN 377
               +P  GT   N
Sbjct: 374 VSLAAPYPGTYLYN 387


>gi|213161079|ref|ZP_03346789.1| MiaB protein (putative tRNA-thiotransferase (or
           tRNA-methylthiotransferase)) [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
 gi|289809512|ref|ZP_06540141.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella
           enterica subsp. enterica serovar Typhi str. AG3]
          Length = 101

 Score = 86.5 bits (213), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 1/67 (1%)

Query: 403 VSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKIS 461
           ++++   +G    +L+E   ++   +L GR+   + V        IG  + V ITDV  +
Sbjct: 1   MAWSRRMLGTTQRILVEGTSRKNIMELSGRTENNRVVNFEGTPEMIGKFVDVEITDVYPN 60

Query: 462 TLYGELV 468
           +L G++V
Sbjct: 61  SLRGKVV 67


>gi|158522883|ref|YP_001530753.1| radical SAM domain-containing protein [Desulfococcus oleovorans
           Hxd3]
 gi|158511709|gb|ABW68676.1| Radical SAM domain protein [Desulfococcus oleovorans Hxd3]
          Length = 520

 Score = 86.5 bits (213), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 57/353 (16%), Positives = 103/353 (29%), Gaps = 54/353 (15%)

Query: 42  LRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDL 101
            +ME    + G       D     V+ T  +                NL     +   + 
Sbjct: 49  EKMEAELSAFG------PD-----VIGTSSVT--------LNFNAAANLLKIARQLFPEA 89

Query: 102 LVVVAGCVAQAEGEEILRRSPIVNVVVG-------------PQTYYRLPELLERARFGKR 148
           + ++ G     +    L R P ++++V               +     P +   A     
Sbjct: 90  ITIMGGPHVSFDYGNTLTRFPEIDLIVVGEGEATIAELTPVIRDRKAWPGIAGIAFKEGE 149

Query: 149 VVDTDYSVEDK--FERLSIV-----DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG- 200
            V      E     +RL +              G  A +    GC   C FC      G 
Sbjct: 150 AVRFTGPRELIGDLDRLPLPARHLLPMSRYLAMGFPASIITSRGCPGKCIFCQGRRMVGS 209

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
              +R   +VVDE   L+  G   I        +               +   + E + L
Sbjct: 210 RVRNRDPRRVVDEIESLLAFGFERINFADDFFTS--------NPRRVRAVCAEI-ERRNL 260

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
                  +    ++  L+            +    +SG   +L  + +  T    R+ + 
Sbjct: 261 KFCWTVFARADSVTPELLAQMRHAG--CDTIFFGFESGDQEMLDRIGKTITLDRIRRAVA 318

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
             ++    + +   FIVG PGET +   A+     ++G    + F   P  GT
Sbjct: 319 DSKAA--GMRVFGSFIVGLPGETAETLAASDRFARELGAEYGYHFLV-PFPGT 368


>gi|146277061|ref|YP_001167220.1| magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative
           cyclase [Rhodobacter sphaeroides ATCC 17025]
 gi|145555302|gb|ABP69915.1| magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative
           cyclase [Rhodobacter sphaeroides ATCC 17025]
          Length = 600

 Score = 86.5 bits (213), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 59/312 (18%), Positives = 107/312 (34%), Gaps = 36/312 (11%)

Query: 99  GDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG------------ 146
            + L V+ G  A     ++L  +P ++V+V  +    L  L++    G            
Sbjct: 92  PNALRVLGGIHATFMFRQVLEEAPWIDVIVRGEGEEVLVNLVKAYEEGNFGETRRQVKGL 151

Query: 147 ------KRVVDTDYSVEDKFERLSIVDGGYNRKRGV-------TAFLTIQEGCDKFCTFC 193
                 + V           + +    G  N K  +        A   +  GC   C+FC
Sbjct: 152 AFLDGDEIVSTPAAPTIRDVDSIDPDWGIINWKNYIYEPLGVRVAIPNMARGCPFTCSFC 211

Query: 194 VVPYTRGIEISRSLSQVVDEARKLI-DNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLY 252
                      R   +VVDE  KL+ ++ V    L  +     R K ++     F + + 
Sbjct: 212 SQWKFWRDYRVRDPKKVVDEIEKLVNEHNVGFFILADEEPTINRKKFIE-----FCEEMI 266

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
           +      +     T           +K +    ++  ++ L  ++ +   L   N+  T 
Sbjct: 267 ARGLPDKVKWGINTRVTDIKRDKEQLKFYRKAGLV--HISLGTEAAAQLKLDVFNKETTV 324

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
            E ++ I  +R    DI   + FIVG   ET +    T  +V       A    Y+P   
Sbjct: 325 AENKEAIRLLREA--DIFTEAQFIVGLENETKETLEETFQMVWDWQPDLANWAMYTPWPF 382

Query: 373 TPGS-NMLEQVD 383
           TP    + +QV+
Sbjct: 383 TPLFQELRDQVE 394


>gi|219852046|ref|YP_002466478.1| Radical SAM domain protein [Methanosphaerula palustris E1-9c]
 gi|219546305|gb|ACL16755.1| Radical SAM domain protein [Methanosphaerula palustris E1-9c]
          Length = 497

 Score = 86.5 bits (213), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 51/262 (19%), Positives = 102/262 (38%), Gaps = 23/262 (8%)

Query: 111 QAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGY 170
           Q     ++ R  + +V +G      +P        G+ V       E   E +  +    
Sbjct: 139 QVASPYMMERLHLDHVHLGEGERT-VPRAFAAILAGEEVPPIITGEEVPVEEIPPLVHPN 197

Query: 171 NRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQ 230
            R       +    GC + C FC  P  +     +S  Q++ +       G   I L  +
Sbjct: 198 IR-----GLVECSRGCGRGCAFC-TPTLQS-LRHKSADQIIHDVTVNAHGGSKSIILHAE 250

Query: 231 NVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS------HPRDMSDCLIKAHGDL 284
           ++  + G  L  +      L+    E++G+  + ++        H   M + L +    L
Sbjct: 251 DMLCYGGTPLHPDPERLLPLVRRTGEVEGITNIGFSHIALATAYHHPHMVEELSEYLLTL 310

Query: 285 DVLMPYL--HLPVQSGSDRILKSMNRRHTA----YEYRQIIDRIRSVRPD--IAISSDFI 336
              MPY+     +++GS +++    R   A     ++ +I+     +  D    I+   +
Sbjct: 311 P-DMPYIGVQTGIETGSPQLIAMHMRGKPAPAPPEKWPEIVVEALGLLHDQNWVIAGTLV 369

Query: 337 VGFPGETDDDFRATMDLVDKIG 358
            G PGET+DD +A+++L+D+I 
Sbjct: 370 SGLPGETEDDVQASLELMDRIR 391


>gi|190410011|ref|YP_001965535.1| probable coenzyme B12-binding/radical SAM [Sinorhizobium meliloti]
 gi|125631041|gb|ABN47042.1| probable coenzyme B12-binding/radical SAM [Sinorhizobium meliloti
           SM11]
          Length = 681

 Score = 86.2 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 57/260 (21%), Positives = 94/260 (36%), Gaps = 19/260 (7%)

Query: 127 VVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGC 186
           + G  +      ++       RV   D+ +   +  +  +   +   R  T  +    GC
Sbjct: 171 ISGAFSRKADGSVVAPHGEATRVKVLDHLLPPAYHLVPDLRSYFALSRRPTILVDSGRGC 230

Query: 187 DKFCTFCVVPYTRG-IEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEK 244
              C FC      G     R++S +VDE +      G  E   +     A RG       
Sbjct: 231 AFACEFCQTTLLNGTKIRYRTVSSLVDELKVYKQRYGDFEAYFVHDLFTARRGF------ 284

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRD-MSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
               DL  +L  I+  + +R+      D +   L+            L   ++SGS   L
Sbjct: 285 --VEDLCDAL--IEADLGIRWQCRCRIDQVDRNLLARMARAG--CRMLLYGIESGSHETL 338

Query: 304 KSMNRRHTAYEYRQIIDRIRSVR-PDIAISSDFIVGFPGETDDDFRATMDL---VDKIGY 359
             MN+R    + + I++ ++      I  S   +VG P E+  D  ATM L     ++G 
Sbjct: 339 SRMNKRAKVSDPQDIVELVKQTVDAGIFPSLSMVVGTPEESLADLDATMALAYRFQQLGS 398

Query: 360 AQAFSFKYSPRLGTPGSNML 379
             AF    SP  GT  +  L
Sbjct: 399 VNAFIQLMSPLPGTALAKRL 418


>gi|256392605|ref|YP_003114169.1| radical SAM domain-containing protein [Catenulispora acidiphila DSM
           44928]
 gi|256358831|gb|ACU72328.1| Radical SAM domain protein [Catenulispora acidiphila DSM 44928]
          Length = 541

 Score = 86.2 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 51/208 (24%), Positives = 80/208 (38%), Gaps = 16/208 (7%)

Query: 166 VDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEI 225
             G    + G TA L     C   C+FC  P   G   + S+  V  E R L + GV  +
Sbjct: 232 WSGFTPAEIGTTAQLRTARSCAFKCSFCDYPSRAGALTTASIDTVRAELRALAELGVRNV 291

Query: 226 TLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK-GLVRLRYTTSHPRDMSDCLIKAHGDL 284
             +    N             F D+   + E   GL    Y         +    A    
Sbjct: 292 VFVDDTFNVP--------PKRFKDMCRMMIEEDLGLNWYSYFRCSNARDDEAFDLAAASG 343

Query: 285 DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETD 344
                 + L ++SG   +L +M++     EYR  I R++     I   +  IVGFPGET+
Sbjct: 344 ---CAGVFLGIESGDGDVLAAMHKLAQDSEYRSGIARLKERA--ITTFASIIVGFPGETE 398

Query: 345 DDFRATMDLVDKIGYA--QAFSFKYSPR 370
              R T+D +++      +A ++  +PR
Sbjct: 399 KTVRNTIDFLNETAPDLWRAQAWWANPR 426


>gi|325969164|ref|YP_004245356.1| radical SAM protein [Vulcanisaeta moutnovskia 768-28]
 gi|323708367|gb|ADY01854.1| Radical SAM domain protein [Vulcanisaeta moutnovskia 768-28]
          Length = 545

 Score = 86.2 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 70/359 (19%), Positives = 126/359 (35%), Gaps = 43/359 (11%)

Query: 79  KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRL 136
               F+ RIR       K    L VVV G  A       E++    I  +  G      +
Sbjct: 134 SFRRFMARIRPYIM-DAKSRNGLKVVVGGPSAWQWLYLPELMDFYGIDTIFDGEGEKL-V 191

Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
            + ++R    + V    Y      +  SI +    +   V  F+ I  GC + C FC  P
Sbjct: 192 VDFVKRVLNNEPV--PRYVYVGVNDVPSINEIPIIKYPAVNGFVEIGRGCPRGCAFC--P 247

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256
            T        L ++ +E +  +  G+    +   +V  +   G+D       D L  L +
Sbjct: 248 VTIRPLRWYPLEKIEEELKLHVKYGIVHGLIHSDDVPLYGSTGVDLNP----DKLIKLHQ 303

Query: 257 IKGLVRLRYTTSHP------------RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304
           +     L    SH               ++  + +   D         + +++GS R+ K
Sbjct: 304 LVKRYYLTIAWSHTTLASVLTAEKKYNRLATKIAEIIEDEHQDWWGAQVGLETGSRRLAK 363

Query: 305 SMN----RRHTAYEYRQIIDRIRSVRPDIA--ISSDFIVGFPGETDDDFRATMDLVDKIG 358
           ++           ++  +++    V  DI    +   IVG PGET+DD   T++L+D+I 
Sbjct: 364 AIMPGKAAPFKIEDWWDVVEEALGVMHDIKLIPALTVIVGLPGETEDDVMETIELLDRIR 423

Query: 359 YAQAFSFK--YSPRLGTPGSN-----MLEQVDENVKAERLLCLQKKLREQQVSFNDACV 410
             ++      Y P                 + E++       L KK+ E  + +    V
Sbjct: 424 PYRSLVVPMFYVPMNHIRAEKDGWIIKYNLMPEHI------ELMKKMFEHSIYWAKDIV 476


>gi|222055060|ref|YP_002537422.1| radical SAM protein [Geobacter sp. FRC-32]
 gi|221564349|gb|ACM20321.1| Radical SAM domain protein [Geobacter sp. FRC-32]
          Length = 571

 Score = 86.2 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 53/338 (15%), Positives = 106/338 (31%), Gaps = 37/338 (10%)

Query: 59  MDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEIL 118
            + AD+++  +C+I           + +   L         +  +V+ G  A     E+L
Sbjct: 54  AEKADVVLF-SCYIWN---------IHQTLKLAADLKLVQPETCIVLGGPEASHGVFELL 103

Query: 119 RRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRK----- 173
            R P V+ +V  +      +LLE     + + D D  +      +               
Sbjct: 104 DRHPAVDCIVRGEGEASCRQLLEALLSDQPIEDIDGILCRTGADIIAAPERAPIACLDSI 163

Query: 174 -----------RGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGV 222
                      +    +     GC   C FC+    RG   S S+ ++ D+   L+   V
Sbjct: 164 PSPFAAGLADLKKPLVYFETSRGCPFSCAFCMSSLERG-VRSFSMERIRDDLGILMAKEV 222

Query: 223 CEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHG 282
             + L+ +  N         E   F              R  +  +    ++D  ++  G
Sbjct: 223 QTVKLVDRTFN--YDASRANEIWDFILCNNR------QSRFHFEIAADL-LTDENVELLG 273

Query: 283 DLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGE 342
            +        + VQS     L+ + R+         + R+R     + I  D + G P E
Sbjct: 274 RVPRDTFRFEIGVQSRDAETLERVGRKSDLERLFSNVARLRQ-DTHVTIHLDLVAGLPEE 332

Query: 343 TDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
               F  ++  + ++              G P   + +
Sbjct: 333 DLQGFLHSLQSLFQLNPHHIQVEPLKVLKGAPMRKIAD 370


>gi|150018372|ref|YP_001310626.1| radical SAM domain-containing protein [Clostridium beijerinckii
           NCIMB 8052]
 gi|149904837|gb|ABR35670.1| Radical SAM domain protein [Clostridium beijerinckii NCIMB 8052]
          Length = 441

 Score = 86.2 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 55/279 (19%), Positives = 99/279 (35%), Gaps = 23/279 (8%)

Query: 99  GDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVED 158
            ++ VV+ G  A    EE+ +    + V  G       PE LE     K   +       
Sbjct: 97  KNIKVVMGGPHATLLQEEVKKHCDYIMVGEG---EIIWPEFLEDFYEDKAKPEYICEEVP 153

Query: 159 KFERLSIVDGGYNRKRGVTAFLTIQ-EGCDKFCTFCVVPYTR-GIEISRSLSQVVDEARK 216
             + + I       KR  T    I   GC   C++C +         +R + +V+ E + 
Sbjct: 154 DLKNMPIARRDLIHKRYFTKGAVISSRGCPYNCSYCNLKQIYCEPFRTRPIKEVISEIKT 213

Query: 217 LIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDC 276
           +             N         +             +++  L R +          D 
Sbjct: 214 MKS---KFFVFWDDNFFGDINFVKELLLELKKLNKKWAAQVT-LERCK---------DDE 260

Query: 277 LIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR-HTAYEYRQIIDRIRSVRPDIAISSDF 335
           L+K   +      Y  + ++S S   L S+N+  +   +Y+ IID+I +    I + +  
Sbjct: 261 LLKLAKEAG--CVYFFVGIESFSQDSLGSVNKGINDVDKYKSIIDKIHNN--GICVQAGI 316

Query: 336 IVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
           I GF  +  D F+ T+D  +++G   A     +P   TP
Sbjct: 317 IFGFDTDKKDVFKKTLDACNELGIDGATVSILTPLPKTP 355


>gi|198283886|ref|YP_002220207.1| hopanoid biosynthesis associated radical SAM protein HpnJ
           [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218667794|ref|YP_002426521.1| radical SAM domain protein [Acidithiobacillus ferrooxidans ATCC
           23270]
 gi|198248407|gb|ACH84000.1| hopanoid biosynthesis associated radical SAM protein HpnJ
           [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218520007|gb|ACK80593.1| radical SAM domain protein [Acidithiobacillus ferrooxidans ATCC
           23270]
          Length = 476

 Score = 86.2 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 64/345 (18%), Positives = 127/345 (36%), Gaps = 50/345 (14%)

Query: 63  DLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSP 122
           DL +++T      +  ++   L                LL+ + G     E EE L+++ 
Sbjct: 72  DLCIIHTSTPSFPSDVRMAEVLKE----------HYPKLLIGMVGAKVAVEPEESLQQAA 121

Query: 123 I-VNVVVGPQTYYRLPELLE------------RARFGKRVVDTDYSVEDKFERLSIVDGG 169
             V+ V   +  Y L E+ E            R+  G+ + + D ++ +  + L  V   
Sbjct: 122 AAVDFVAREEFDYTLKEIAEGRPLSEVDGITYRSSNGQIIHNPDRAMIEDMDALPFVSEV 181

Query: 170 YNRKRGVTAFLT-----------IQEGCDKFCTFCVVPYTRG--IEISRSLSQVVDEARK 216
           Y R   +  +                GC   CTFC+ P T G     +RS + V++E R 
Sbjct: 182 YKRDLHIEDYFIGYLKHPYISFYTGRGCRSQCTFCLWPQTVGGHRYRTRSAASVIEEVR- 240

Query: 217 LIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDC 276
            I     ++  +      +       ++    ++   L ++     + ++ +   ++   
Sbjct: 241 YIQKNFPQVKEI-----FFDDDTFTDDRPRAEEIARGLGKLG----VTWSCNAKANVPYD 291

Query: 277 LIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFI 336
            +K     +  +  L +  +SG  +IL ++ +       R+       +   I I   FI
Sbjct: 292 TLKVL--HENGLRLLLVGYESGDQQILNNIKKGLKVEAARKFTADCHKL--GIVIHGTFI 347

Query: 337 VGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +G PGET +  + T+D   +I          +P  GT   N  +Q
Sbjct: 348 LGLPGETKETIQKTIDFAKEINPHTIQVSLAAPYPGTFLYNQAKQ 392


>gi|110598491|ref|ZP_01386761.1| Radical SAM [Chlorobium ferrooxidans DSM 13031]
 gi|110339864|gb|EAT58369.1| Radical SAM [Chlorobium ferrooxidans DSM 13031]
          Length = 497

 Score = 86.2 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 56/301 (18%), Positives = 99/301 (32%), Gaps = 22/301 (7%)

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             L   +  +           V++ G       +E       V  V G +      EL  
Sbjct: 128 RTLNATKAYRIGDAALRQGKTVILGGVHPTMLHDEAASHCTSV--VYG-EIESIWTELAT 184

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGY----NRKRGVTAFLTI--QEGCDKFCTFCVV 195
             + GK               +   D  Y       +  ++ + I   +GC   C FC  
Sbjct: 185 DVQNGKMQPIYRAKELKPMGSMLHPDFSYALSSPSAKKYSSRIPILATKGCPVGCNFCTT 244

Query: 196 PYTRGI-EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL 254
           P   G     R L  V+DE R   +    E      N  ++    +      F  LL  +
Sbjct: 245 PTIYGKNYRYRELDLVLDEMRYHQNRLNKE----KINF-SFMDDNISFRPQYFFTLLEEM 299

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA-Y 313
           +++ G+      + +  D  +    A          L +  +S +   LKS+++      
Sbjct: 300 AKL-GVNWNANISMNFLDKPEV---AELAGRSGCDLLSIGFESLNPETLKSVHKGSNRLG 355

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
            Y +++  +      IAI   F+ GF  +T++ F+ T D + K           +P  GT
Sbjct: 356 NYEKVVSNLHKN--GIAIQGYFMFGFDNDTEESFQLTYDFIMKNRIEFPVFSLVTPFPGT 413

Query: 374 P 374
           P
Sbjct: 414 P 414


>gi|91975966|ref|YP_568625.1| magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative
           cyclase [Rhodopseudomonas palustris BisB5]
 gi|91682422|gb|ABE38724.1| Magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative
           cyclase [Rhodopseudomonas palustris BisB5]
          Length = 567

 Score = 85.8 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 56/323 (17%), Positives = 113/323 (34%), Gaps = 40/323 (12%)

Query: 92  NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK---- 147
            +  +    ++ ++ G  A    +++L  +P V+V+V  +    + EL      G+    
Sbjct: 85  KTAKQVDPKVVTMLGGVHATFMYQQVLTEAPWVDVIVRGEGEEIVVELARAVESGQWQAN 144

Query: 148 -----------------RVVDTDYSVEDKFERLSIVDGG--------YNRKRGVTAFLTI 182
                            ++V T  +   K       D G        Y       A   +
Sbjct: 145 RAEIKGLAYTEGMNGESKIVATPAAPTVKDLDAISPDWGILDWTLYKYIPMNTRVAIPNM 204

Query: 183 QEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLD 241
             GC   C+FC           R   +VVDE  +L++   V    L  +     R K + 
Sbjct: 205 ARGCPFTCSFCSQWKFWRDYRVRDPKKVVDEIEELVNKYQVGFFILADEEPTINRKKFIQ 264

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
             +   +  L    +++  +  R T     +    L+K + +  ++  ++ L  ++ +  
Sbjct: 265 FCEELIARGLNK--KVQWGINTRVTDILRDE---QLLKFYNEAGLM--HVSLGTEAAAQL 317

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
            L   N+     + ++ I  +R     I + + FIVG   ET +    T  +        
Sbjct: 318 KLDLFNKETKISDNKKAIRLLREA--GIVVEAQFIVGLDSETPETLEETYRMAMDWKPDL 375

Query: 362 AFSFKYSPRLGTPGSN-MLEQVD 383
           A    Y+P   TP    + ++V+
Sbjct: 376 ANWSMYTPWPFTPLFKELSDKVE 398


>gi|194334775|ref|YP_002016635.1| magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative
           cyclase [Prosthecochloris aestuarii DSM 271]
 gi|194312593|gb|ACF46988.1| magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative
           cyclase [Prosthecochloris aestuarii DSM 271]
          Length = 546

 Score = 85.8 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 64/420 (15%), Positives = 132/420 (31%), Gaps = 63/420 (15%)

Query: 42  LRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDL 101
             M D    +  E +   ++ D+++  T +I           + + +++     K    +
Sbjct: 45  DAMADDLPDETIEEIIRTNEPDVVL--TTNITPS--------IFKAQDIMKLAKKVNPKI 94

Query: 102 LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA------------------ 143
             ++ G  +     ++L  +P  + V+  +       L++                    
Sbjct: 95  RTIMGGIHSTFMYPQVLSEAPETDYVIRGEGEEIAVNLIKAIAAGTDLQDRENITGIAYI 154

Query: 144 -RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT-------AFLTIQEGCDKFCTFCVV 195
              GK      + V +  + L+     Y+  + +        A      GC   CTFC  
Sbjct: 155 NEEGKVHATPAHPVIEDLDDLTPDWSLYDWDKYIYTPLNCRLAVPNFARGCPFTCTFCSQ 214

Query: 196 PYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL 254
                   +RS    VDE   L+    V    L  +     + K +       S     +
Sbjct: 215 WQFWRRYRARSPKHFVDEIEILVKKYDVGFFILADEEPTINKQKFV-------SLCQELI 267

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
               G+     T        + L+  +    ++  ++ L  ++ S   L    +  T  E
Sbjct: 268 DRDLGVTWGINTRVTDIMRDEDLLPFYRKAGLV--HVSLGTEAASQMNLNRFRKETTIEE 325

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
            +  I  ++     I   + F++G   ET      T  L        A    Y+P    P
Sbjct: 326 NKYAIKLLQKN--GIVAEAQFVMGLEHETPQTIEETYQLCKDWDPDMANWTIYTPW---P 380

Query: 375 GSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR 431
            S++ +++ + V+     R   +   ++   +   D   G    VL     K  G+   R
Sbjct: 381 FSDLFKELGDRVEVRDYSRYNFVSPIIKPDNMEREDVLKG----VL-----KSYGRFYAR 431


>gi|326790409|ref|YP_004308230.1| radical SAM protein [Clostridium lentocellum DSM 5427]
 gi|326541173|gb|ADZ83032.1| Radical SAM domain protein [Clostridium lentocellum DSM 5427]
          Length = 449

 Score = 85.8 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 65/330 (19%), Positives = 118/330 (35%), Gaps = 33/330 (10%)

Query: 54  ERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAE 113
           E +     +D++VL+       +A++ Y    R +           D LVV+ G  A   
Sbjct: 45  ETLPEYLSSDMVVLSFDTF---SAKRAYQLARRYKR---------EDNLVVLGGFHASML 92

Query: 114 GEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRK 173
            +E        +VV+        P L+E A  G+         + +   +      +  K
Sbjct: 93  PDEAADYG---DVVLVGDAEDTWPLLIEDALKGEVKPRYSSKGDCELSYIDPNHSSFKGK 149

Query: 174 R-GVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNV 232
           R      +    GC   C FC +      ++      +    R++ +        +  N+
Sbjct: 150 RYQKIGVVQFSRGCKFGCDFCSIKAMYPHQV--RQKNIELMVREIKETKERLFFFIDDNL 207

Query: 233 NAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLH 292
                      + T   LL +L + K   R     S    M+D L+K   +   L+  + 
Sbjct: 208 F--------LNEETTLRLLQALKQCKK--RWACQISIDIAMNDKLLKLMKESGCLL--VL 255

Query: 293 LPVQSGSDRILKSMNRRHT-AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351
           +  +S     LK M +    A +Y + I  I   +  + I + F++G+  +T++ F AT 
Sbjct: 256 IGFESLDAGNLKHMKKVANLATQYEEAIKNI--YKHGLMIYATFVLGYDEDTNESFEATF 313

Query: 352 DLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
               K  +A A      P  GT     LE+
Sbjct: 314 RFAMKHHFAVANFNPLIPMPGTALYKRLEE 343


>gi|89892829|ref|YP_516316.1| hypothetical protein DSY0083 [Desulfitobacterium hafniense Y51]
 gi|89332277|dbj|BAE81872.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 445

 Score = 85.8 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 50/274 (18%), Positives = 91/274 (33%), Gaps = 22/274 (8%)

Query: 103 VVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFER 162
           VV  G    +  +E        + +           ++E A  G+         + + E 
Sbjct: 87  VVAGGIHVTSSPDECRGYF---DAICIGAAERIWARMIEDAEEGRLQQVYHDMTDFRGEE 143

Query: 163 LSIVDGGYNRKRGV--TAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN 220
           ++        K     T  +T   GC   C FC       + I R ++ V+ +   L   
Sbjct: 144 IASPAYHRIDKNRYLYTNIITTSRGCPNRCGFCYNSCRNRMYIRRPVANVLRDIEGL--- 200

Query: 221 GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKA 280
           G   I  +  N          G      +LL  L   +       TT         ++  
Sbjct: 201 GTRHILFIDDNFI--------GVPAYTRELLNHLRGRELKWSAAVTT--KIADYPDVLDL 250

Query: 281 HGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFP 340
             +       L +  +S ++  L  +N+ +   +Y +I+  I S    I I++  + G  
Sbjct: 251 MAETG--CQSLFIGFESINNSSLHGVNKDNQFEKYERIVTAIHSR--GIMINASMVFGLD 306

Query: 341 GETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
           G+  D F+ T+D + K       S   +P  GT 
Sbjct: 307 GDEPDVFQRTLDWLVKNKIETLTSHILTPYPGTE 340


>gi|239787273|emb|CAX83751.1| Radical SAM domain protein [uncultured bacterium]
          Length = 478

 Score = 85.8 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 62/373 (16%), Positives = 114/373 (30%), Gaps = 54/373 (14%)

Query: 44  MEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR----------IRNLKNS 93
           +  +   +G E       A+ +  NT  + E+        LG           ++ +K  
Sbjct: 37  VAAILEQEGVEVQLIDQQAENLSYNT--LLERINRFGPDLLGFTLTTYSFHPVLKWIKR- 93

Query: 94  RIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT--------------------- 132
            +++   + V+V G       EE +    I   VVG                        
Sbjct: 94  -LRKDTGVRVLVGGAHVALYPEETMFHKEIDFAVVGEAEIPLPQLIRALIRGESLSGLKS 152

Query: 133 -YYRLPE---LLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
             YR P+   ++ER R   + +D          +  +      RK+  T  ++   GC  
Sbjct: 153 ICYRTPDGTPIIERTRQTMKELDRIPFPARHLIKNELYSNILTRKKNFTVIMST-RGCPY 211

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS 248
            CTFC           RS    ++E R   +                        +    
Sbjct: 212 RCTFCD--QKTPPYRWRSPESFIEEVRLNREK-------FDIQEFDIYDSTFTANRKRVM 262

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
            +   L   +GL       S    ++  ++ A          +   V+S +  ILK+M +
Sbjct: 263 KICELLVA-EGLKVNWTARSTLMAVNHEMLDAMKAAG--CHTIMYGVESSNAEILKTMKK 319

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
                     I     +   I +   F+ G+PGET +    T+    ++    A      
Sbjct: 320 SIPRERVVDRIQYTHDI--GIQVLGFFMFGYPGETRETIEDTIRYSLELPLDYAQYTVIW 377

Query: 369 PRLGTPGSNMLEQ 381
           P   T   ++ +Q
Sbjct: 378 PFPDTEIHDLYQQ 390


>gi|312115216|ref|YP_004012812.1| magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative
           cyclase [Rhodomicrobium vannielii ATCC 17100]
 gi|311220345|gb|ADP71713.1| magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative
           cyclase [Rhodomicrobium vannielii ATCC 17100]
          Length = 608

 Score = 85.8 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 56/357 (15%), Positives = 110/357 (30%), Gaps = 49/357 (13%)

Query: 42  LRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDL 101
             M D         + + +  D+I          +  K    L   + +         ++
Sbjct: 45  DAMTDNLTEDELRAILAEEKPDII---GSTAITPSIYKAERVLQIAKEVH-------PNV 94

Query: 102 LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK-------------- 147
           + V+ G        +IL  +P ++ ++  +    +  L++    G+              
Sbjct: 95  VTVLGGIHGTFMYSQILHEAPWIDAIIRGEGEAVMLNLVKAIDKGEWPDSRGQVHGIAYQ 154

Query: 148 ------------RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
                        + D D  V D +  L      Y       A   +  GC   C+FC  
Sbjct: 155 EGSKVIATPAEPPIRDVDSIVAD-WSILDWTKYHYIPMNTRVATPNMARGCPFTCSFCSQ 213

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
                    R    VVDE   L+ +      +L               +  F      L 
Sbjct: 214 WKFWRDYRVRKPKLVVDEIETLVRDHNVGFFILADEEPTI-------NRKAFVAFCEELI 266

Query: 256 EIK-GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
           E K  ++    T        + L+  +    ++  ++ L  ++ +   L   N+  T  +
Sbjct: 267 ERKLPVLWGINTRVTDILRDEDLLPMYRKAGLV--HISLGTEAAAQLNLDLFNKETTVGQ 324

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
            ++ ID +R+    I   + FIVG   ET +    T  +V +     A    ++P  
Sbjct: 325 NKKAIDLLRAN--GIVTEAQFIVGLDNETLETLEETYKMVREWNPDMANWSMFTPWP 379


>gi|291286606|ref|YP_003503422.1| Radical SAM domain protein [Denitrovibrio acetiphilus DSM 12809]
 gi|290883766|gb|ADD67466.1| Radical SAM domain protein [Denitrovibrio acetiphilus DSM 12809]
          Length = 780

 Score = 85.8 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 46/198 (23%), Positives = 85/198 (42%), Gaps = 16/198 (8%)

Query: 164 SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG-IEISRSLSQVVDEARKLIDNGV 222
             V G  +     TA +    GC+  C FCV P          S+  V++E + L   G+
Sbjct: 174 PYVQGVIDLSMKKTACIFTSRGCEHVCNFCVTPLFNNMRIRFHSVDHVLEEMQYLESAGM 233

Query: 223 CEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM-SDCLIKAH 281
             + +   N  A+R + +        +L+    +I   +R+ +      DM    L+K  
Sbjct: 234 DSLWIGDPNFTAYRSRTV--------ELMEQ--KINRGIRIPFWCQTRVDMVDKDLLKLM 283

Query: 282 GDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPG 341
               +    +   ++SGSD+IL +M++  +   + +I+   +S+   I +    + G PG
Sbjct: 284 QKAGLHC--IGFGLESGSDKILNTMHKEVSISRFHEIVTYAQSL--GINVELFSMYGQPG 339

Query: 342 ETDDDFRATMDLVDKIGY 359
           ET +D R T+ +V K   
Sbjct: 340 ETYEDARKTISIVQKYDI 357


>gi|194336678|ref|YP_002018472.1| Radical SAM domain protein [Pelodictyon phaeoclathratiforme BU-1]
 gi|194309155|gb|ACF43855.1| Radical SAM domain protein [Pelodictyon phaeoclathratiforme BU-1]
          Length = 469

 Score = 85.8 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 41/193 (21%), Positives = 73/193 (37%), Gaps = 15/193 (7%)

Query: 185 GCDKFCTFCVVPYTRGI-EISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDG 242
           GC   C FC  P   G     R L  V+DE R   +  G   +        ++    +  
Sbjct: 206 GCPVGCNFCTTPTIYGKNYRYRELDLVLDEMRYHQERVGKKNVNF------SFMDDNISF 259

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
               F  LL  ++++ G+      + +  D  +    A          L +  +S +   
Sbjct: 260 RPKYFMTLLEEMAKL-GVHWNANISMNFLDKPEV---AELAGRSGCDLLSIGFESLNPET 315

Query: 303 LKSMNRRHTA-YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
           LK++++       Y Q++  +   +  IAI   F+ GF  +T++ F+ T D + K     
Sbjct: 316 LKTLHKGSNRLSNYEQVVSNLHKNK--IAIQGYFMFGFDNDTEESFQLTYDFIMKNKIEF 373

Query: 362 AFSFKYSPRLGTP 374
                 +P  GTP
Sbjct: 374 PVFSLVTPFPGTP 386


>gi|77920081|ref|YP_357896.1| Fe-S oxidoreductase [Pelobacter carbinolicus DSM 2380]
 gi|77546164|gb|ABA89726.1| Fe-S oxidoreductase [Pelobacter carbinolicus DSM 2380]
          Length = 609

 Score = 85.8 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 44/290 (15%), Positives = 92/290 (31%), Gaps = 22/290 (7%)

Query: 95  IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG------KR 148
           +K     LV+ AG          + + P ++ V+  +    +   L   + G        
Sbjct: 101 LKARRPQLVLFAGGAEVTAAPSGIEQHPAIDFVLPGEGEEIVVAALRLLQEGCLPAQVGE 160

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
            ++     +        + G    +R       +  GC   C FC               
Sbjct: 161 QLNPSPVTDLATLPSPFLTGLLPPERYPGLLWELSRGCPFRCDFCFESRGSDKVRRFPPE 220

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
           ++  E       GV ++ +L    N  +             +L  ++E+     + YT  
Sbjct: 221 RLRAELESFAAAGVRQLFVLDPTFNYHQ--------PQAKQMLRMMAELAP--EIHYTIE 270

Query: 269 HPRDM-SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
              +   + +     D   +   L + +QS    +L  ++R+  A ++ + I  +     
Sbjct: 271 VRAEFIDEEMAGLFAD---INCALQIGLQSADPAVLARVHRQFDAEDFTERILLLHEA-- 325

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
            +    D I G PG+T   F  ++D    +       F  +   GT  + 
Sbjct: 326 GVIYGFDLIYGLPGDTLQGFIDSLDFALGLRPNHLDIFPLAVLPGTRLAE 375


>gi|116750352|ref|YP_847039.1| radical SAM domain-containing protein [Syntrophobacter fumaroxidans
           MPOB]
 gi|116699416|gb|ABK18604.1| Radical SAM domain protein [Syntrophobacter fumaroxidans MPOB]
          Length = 497

 Score = 85.8 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 62/328 (18%), Positives = 105/328 (32%), Gaps = 43/328 (13%)

Query: 72  IREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ 131
           +   +   + + +  I  LK    K    +     G       EE LR+S  ++ V   +
Sbjct: 83  VTHTSTPSLLNDIQFIEALKERHPK----VQAGFIGPHVTVLPEETLRQSGAIDFVCRSE 138

Query: 132 TYYRLPELLE------------RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAF 179
             +   EL +            RA  G      D  +    + L  V   Y+R   +  +
Sbjct: 139 FDFTCLELAQGKPYDKIDGLSYRAPDGSIRHTPDRKLLMDQDSLPSVFPVYHRDLSIEKY 198

Query: 180 -----------LTIQEGCDKFCTFCVVPYTRGIEISR--SLSQVVDEARKLIDNGVCEIT 226
                           GC   C+FC+ P T G    R  S   V+ E  +  +       
Sbjct: 199 SIGYLLHPYVSFYTGRGCPARCSFCLWPQTIGGHKYRAKSPEVVIREVEEGREL------ 252

Query: 227 LLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV 286
                    R    D +  T ++   ++   KG+ RL    S         I        
Sbjct: 253 -----FPQVREWFFDDDTFT-ANPGRAVEISKGMKRLGLRWSCNARADVDYITLKALRQN 306

Query: 287 LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDD 346
            M  + +  +SG+ RIL  + +  T    RQ +     +   I +   FI+G P ET + 
Sbjct: 307 GMRLVVVGFESGNQRILDRVRKGITLQRSRQFMKNCHEL--GIKVHGTFIIGLPIETRET 364

Query: 347 FRATMDLVDKIGYAQAFSFKYSPRLGTP 374
              T+    ++          +P  GT 
Sbjct: 365 IEETIRFAQELDPYAIQVSLAAPFPGTE 392


>gi|257468752|ref|ZP_05632846.1| Radical SAM domain protein [Fusobacterium ulcerans ATCC 49185]
 gi|317063006|ref|ZP_07927491.1| radical SAM domain-containing protein [Fusobacterium ulcerans ATCC
           49185]
 gi|313688682|gb|EFS25517.1| radical SAM domain-containing protein [Fusobacterium ulcerans ATCC
           49185]
          Length = 407

 Score = 85.8 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 54/331 (16%), Positives = 124/331 (37%), Gaps = 35/331 (10%)

Query: 53  YERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQA 112
           Y+        D+IV+        ++++ Y      +              +V+ G    A
Sbjct: 31  YKVDYDKKKYDIIVI---SFDTSSSKQAYIHSKEFKK---------RGAYIVMGGYHTSA 78

Query: 113 EGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK-RVVDTDYSVEDKFERLSIVDGGYN 171
             +E       V  ++G      LPE       G+ + +  + +++ +  ++   +   +
Sbjct: 79  VPKEAAEHCDTV--IIGAGEIS-LPEFFHDYLKGEPKKIYNNQNIDVRKIKMVPRNLIKS 135

Query: 172 RKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQN 231
           ++    + +    GCD  C+FC +         R +  V++E + L  +   +I     N
Sbjct: 136 KRYMKVSPVIADRGCDNKCSFCAISEMW-KSNPRPVEDVIEEIKSLKSD---KIIFFDPN 191

Query: 232 VNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL 291
               +   L         L+  + ++K +      T+      D L++A          +
Sbjct: 192 FFYPKEYSLK--------LMKEMEKLK-IKWAGNGTADAP-FDDELMEAAKRSG--CSGI 239

Query: 292 HLPVQSGSDRILKSMNRRHT-AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
            +  +S  +  LK +N++ +    Y+  IDR      +IAI+  F++G  G+T++D  A 
Sbjct: 240 LIGFESLREETLKGVNKKFSNVERYKDCIDRAHKY--NIAINGCFVLGMDGDTEEDLLAL 297

Query: 351 MDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
            + +  +G   A     +P   +     +++
Sbjct: 298 PEKIKYLGLDLARFSILTPLPNSELYRKMDK 328


>gi|239835361|ref|YP_002956033.1| cobalamin vitamin B12-binding domain/radical SAM domain protein
           [Desulfovibrio magneticus RS-1]
 gi|239794452|dbj|BAH73443.1| cobalamin vitamin B12-binding domain/radical SAM domain protein
           [Desulfovibrio magneticus RS-1]
          Length = 501

 Score = 85.8 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 45/232 (19%), Positives = 91/232 (39%), Gaps = 19/232 (8%)

Query: 153 DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI--EISRSLSQV 210
           D    D++   +        +R   A L+   GC   CTFC +    G     +RS + V
Sbjct: 192 DLLPMDRYRAHNWHCFNDITRRQPYAVLSTSLGCPYHCTFCCINALFGRPGLRTRSTASV 251

Query: 211 VDEARKLID-NGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSH 269
           + E   L+  +GV  I +L +             +    +L  +++E +G     +  + 
Sbjct: 252 LQEIDWLVSTHGVRNIKILDE--------MFAINEKRVVELCDAIAE-RGYDLNIWAYAR 302

Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329
              ++  +I++       + +L    ++ S R+L +  + +   +   ++D  R     I
Sbjct: 303 VNTVTPPMIESMKRAG--VNWLAYGFETASRRVLAANAKGYDPAKVDAVVDLTRRA--GI 358

Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
            I ++FI G P +  D  + T+  + +I    A  +      G   S + EQ
Sbjct: 359 YICANFIFGLPEDDYDSMQETLARMQEINAEWANIYSAMAFPG---SKLYEQ 407


>gi|320105711|ref|YP_004181301.1| Radical SAM domain-containing protein [Terriglobus saanensis
           SP1PR4]
 gi|319924232|gb|ADV81307.1| Radical SAM domain protein [Terriglobus saanensis SP1PR4]
          Length = 521

 Score = 85.4 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 59/307 (19%), Positives = 104/307 (33%), Gaps = 23/307 (7%)

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             +R  +  ++       VV  G  A    EE        +VVV         ++L   +
Sbjct: 66  NALRGYEVGKLAHERGATVVYGGIHATLFPEEPF-EYGAADVVVKGDGDIAWGQVLRDIQ 124

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG-IEI 203
            G      D    +  + L+         + + A +    GC K C+FC V  T G    
Sbjct: 125 AGCAGRIYDGGKIEGDDFLAARWDLMQTDKYMWASVQTIRGCPKHCSFCSVWRTDGQKPR 184

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNV---------------NAWRGKGLDGEKCTFS 248
            RS  +V+DE   L   G   I L   N                NA + + L   +    
Sbjct: 185 QRSFEKVIDEIIDLRRLGFRFIALADDNFYPVTLTDLRLAREQNNAEKLESLLAIRAERF 244

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
            L+  L+++   +      +         + A    ++      + V++ +   LK++ +
Sbjct: 245 SLMAELAKLPKDMVFFTQITMESAEDTEYLDAMRRANI--KGALVGVEAVTPEGLKAVFK 302

Query: 309 --RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
              ++     Q +   R     + +   FI G P +    F AT++L  K G   A    
Sbjct: 303 DFNYSGDRLVQQLQTFRE--HGVHVLGSFIFGLPTDKPSTFGATVELALKAGVTFAQFVM 360

Query: 367 YSPRLGT 373
            +P  GT
Sbjct: 361 MTPFPGT 367


>gi|193213234|ref|YP_001999187.1| radical SAM domain-containing protein [Chlorobaculum parvum NCIB
           8327]
 gi|193086711|gb|ACF11987.1| Radical SAM domain protein [Chlorobaculum parvum NCIB 8327]
          Length = 476

 Score = 85.4 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 53/275 (19%), Positives = 88/275 (32%), Gaps = 21/275 (7%)

Query: 103 VVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFER 162
           VV+ G       +    R     +V+G +      E+LE  R G    +           
Sbjct: 117 VVLGGPYVSIFPDR--CREHGDTLVIG-EADDLWREVLEDLRRGALKPEYRQGAFPDLSA 173

Query: 163 LSIVDGGYNRKRGV--TAFLTIQEGCDKFCTFCVVPYTRG-IEISRSLSQVVDEARKLID 219
              VD    +      T  +    GC   C FC V    G     R +++VV E  + + 
Sbjct: 174 PRPVDKSALQINRYFTTNVVQTTRGCPYSCDFCNVHVMNGHKLRHRPVAEVVREVEQFLK 233

Query: 220 NGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIK 279
                   L   VNA        ++   S+L   L  I   ++     +     +  L+ 
Sbjct: 234 QDRRIFFFLDDTVNA--------DEAYASELFSKL--IPFNIKWVGQATTLLGENPKLLD 283

Query: 280 AHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT-AYEYRQIIDRIRSVRPDIAISSDFIVG 338
                      L + ++S +D   ++ ++ H  A    + I  IR     I +   FI G
Sbjct: 284 IFARSG--CGALLVGIESLADESNRAHHKFHNPAERQVRCIQEIRKA--GICVYGSFIYG 339

Query: 339 FPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
             G+T          +D+ G          P  GT
Sbjct: 340 LDGDTLAMPERIDAFIDEAGVDVPGINLLRPIPGT 374


>gi|91200506|emb|CAJ73554.1| hypothetical protein kuste2803 [Candidatus Kuenenia
           stuttgartiensis]
          Length = 493

 Score = 85.4 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 53/303 (17%), Positives = 103/303 (33%), Gaps = 22/303 (7%)

Query: 88  RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147
           R  K +       + V++ G  A +  +E    +  V+ VV  +       +++    G+
Sbjct: 80  RAYKIATACRKRGIPVIMGGIHATSNPDE---AAKYVDSVVIREGITLWSTIIDDFEKGR 136

Query: 148 --RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQE-GCDKFCTFCVVPYTRG-IEI 203
             +  D   +  + +  LS        K        I   GC   C FC VP  +G    
Sbjct: 137 LRKRYDGGLTPMEIYCNLSPDRKFLKDKYKYRYSGIITTAGCPFACEFCSVPQFQGQKYR 196

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
            R +  +++E    I      + L  +N      K  +  +  F  ++       G+ + 
Sbjct: 197 ERPVDDILNEFE-SIKGQYRGLILTDENFYGHSKKSNERVRTLFKGMVER-----GIYQN 250

Query: 264 RYT-TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR----RHTAYEYRQI 318
            +  TS      D  ++           + + ++S  +  LKSMN+    + +   Y + 
Sbjct: 251 WFGFTSLNIYKDDETLEYMAKSG--CVGVLIGIESIEEESLKSMNKNVNLKISVENYYEA 308

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           I  IR     +A+    + G   +T   F    D +              P + TP  + 
Sbjct: 309 IANIRK--HGLAVWGTMVFGNDADTSGTFERVADFILDSHIDIMTCGILCPFINTPLYHR 366

Query: 379 LEQ 381
           L +
Sbjct: 367 LNR 369


>gi|116329358|ref|YP_799078.1| Fe-S oxidoreductase [Leptospira borgpetersenii serovar Hardjo-bovis
           L550]
 gi|116330041|ref|YP_799759.1| Fe-S oxidoreductase [Leptospira borgpetersenii serovar Hardjo-bovis
           JB197]
 gi|116122102|gb|ABJ80145.1| Fe-S oxidoreductase [Leptospira borgpetersenii serovar Hardjo-bovis
           L550]
 gi|116123730|gb|ABJ75001.1| Fe-S oxidoreductase [Leptospira borgpetersenii serovar Hardjo-bovis
           JB197]
          Length = 567

 Score = 85.4 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 50/327 (15%), Positives = 114/327 (34%), Gaps = 42/327 (12%)

Query: 103 VVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR-------------- 148
           V++ G    A   E++  +P V+ ++  +    + + L   +  KR              
Sbjct: 137 VLMGGSHVSACP-ELMLSNPNVDFIIRGEGEKPICDFLTEFQTRKRYAIVDSLGWKENGS 195

Query: 149 ----VVDTDYSVED--KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG-I 201
                +  ++ +++    +  S+    Y  +     F+     C   C+FC V  T G  
Sbjct: 196 LRLNPIGDNFPIQELPAPDVSSLSKEHYLFEGRPMRFVITSRSCPHRCSFCSVHTTFGTK 255

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
               +++ V+ E ++  + G         N+  +        +   + L   L       
Sbjct: 256 YRRNTVANVLSEIKESYELGYRVFDFEDDNLTFF--------RPEMTKLCEELIRAFPKK 307

Query: 262 RLRYTTSHP---RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
            +R+   +      +   L++   D       L+L + S    + ++  R HT  +Y Q+
Sbjct: 308 DVRFVAMNGISYISLDSELLRLMRDAG--FTNLNLALVSSDKLVRETTKRPHTIEKYLQV 365

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP-GSN 377
           +     +     I+S  I+G P ET +    T+   +        +  +     +P  S+
Sbjct: 366 VRESFEL--GFQITSYQILGLPMETLESMIQTLRF-NAAQPVLMGASLFYLTPNSPIASD 422

Query: 378 MLEQVDENVKAERL---LCLQKKLREQ 401
             E+ + ++   RL     L +    +
Sbjct: 423 FPERSESDIFLSRLTSMAILSEHFERE 449


>gi|158522445|ref|YP_001530315.1| radical SAM domain-containing protein [Desulfococcus oleovorans
           Hxd3]
 gi|158511271|gb|ABW68238.1| Radical SAM domain protein [Desulfococcus oleovorans Hxd3]
          Length = 520

 Score = 85.4 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 51/225 (22%), Positives = 80/225 (35%), Gaps = 19/225 (8%)

Query: 153 DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG-IEISRSLSQVV 211
           D    + +    +  G + RK   T  ++   GC   C FC      G     RS   V+
Sbjct: 202 DLLPMETYFSARLPMGFHWRKTRNTPIVS-SRGCPFGCPFCSSWRHWGQRFRKRSPENVL 260

Query: 212 DEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT--S 268
            E   L     + E+     N+ A      +  K  FS ++       GLV    T    
Sbjct: 261 AEIEHLKTRYNIQELKWQDDNLTA----DRNRAKAIFSGMIDR-----GLVMPWNTPNGI 311

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL-KSMNRRHTAYEYRQIIDRIRSVRP 327
               + + ++            + L V+SG      K + +  T    ++I    R    
Sbjct: 312 ALWTLDEEMLDLMKKSG--CFEITLAVESGDPASFEKYVRKPFTLDTAKRIAGLARER-- 367

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
            IA  + FI+GFPGET D  + +M     +G      F Y+P  G
Sbjct: 368 GIATVAYFILGFPGETIDQIKNSMRYALDLGVDYLSPFVYTPLPG 412


>gi|91203104|emb|CAJ72743.1| conserved hypothetical protein [Candidatus Kuenenia
           stuttgartiensis]
          Length = 477

 Score = 85.4 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 61/354 (17%), Positives = 121/354 (34%), Gaps = 52/354 (14%)

Query: 54  ERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAE 113
           E V+   D +L+V+ T         +        + +K +      + ++   G     +
Sbjct: 63  EVVSLAGDYELVVMYTNTPTLSIDRET------AKKIKAA----NPESVICFVGPHVTIQ 112

Query: 114 GEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR-----------VVDTDYSVEDKFER 162
            E+ LR   IV++V   +    + EL E     +            V + D       + 
Sbjct: 113 PEDALREDRIVDIVARGEFDITVKELAEGKALQEVKGISYLNGSGVVHNADRGFTTDLDS 172

Query: 163 LSIVDGGYNRKRGVT---------AFLTI--QEGCDKFCTFCVVPYTRGIE--ISRSLSQ 209
           L  V   Y R               +L+I    GC   C +C+ P T        RS+  
Sbjct: 173 LPFVTEIYERDLNYKDYEIPYLRYPYLSIYSGRGCPSQCIYCLWPQTMMGHQYRVRSVDN 232

Query: 210 VVDEARKLIDN--GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
           V+ E     +    V EI        A         +    +    + ++     + ++ 
Sbjct: 233 VIRELMYCKERFPEVKEIFFDDDTFTA--------NRKRVQEFSRKVKDLG----ITWSA 280

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
           +   ++    ++   +    +  L +  +SG+D ILK++ +  T  + ++     +S+  
Sbjct: 281 TSRANLDRETLQQMKEGG--LRLLVVGYESGNDEILKNVKKGITIDQAKRFTGECKSL-- 336

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
            I I   F++G PGE       T+    ++          SP  GT   +  E+
Sbjct: 337 GIQIHGTFMLGLPGENRSSMEDTIRFAIEMDPDTMQVSIASPYPGTEFYDYCEK 390


>gi|118581790|ref|YP_903040.1| magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase
           [Pelobacter propionicus DSM 2379]
 gi|118504500|gb|ABL00983.1| Magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase
           [Pelobacter propionicus DSM 2379]
          Length = 485

 Score = 85.4 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 44/226 (19%), Positives = 74/226 (32%), Gaps = 22/226 (9%)

Query: 162 RLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE--ISRSLSQVVDEARKLID 219
            ++I +  Y   +          GC   C +CV P          RS   VV E   ++ 
Sbjct: 191 HVNINNYFYAHTKPPVISFFAGRGCPNKCFYCVYPQVMFGHTYRHRSAEDVVGEIEYIVK 250

Query: 220 N--GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI--KGLVRLRYTTSHPRDMSD 275
               V E+ +   N                 D +  + +I     +RL +T     ++  
Sbjct: 251 EFPEVREVLIDDDNFTVD------------QDHVMRICDIIINRGLRLSWTVEARVNLRY 298

Query: 276 CLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDF 335
            ++ A          L    +SG  +IL +M +  T  +  Q     +     + +   F
Sbjct: 299 EVMVAMRRAG--CRLLVAGFESGDQQILDNMCKGATVTQAEQFCQNAKKA--GLRVHGCF 354

Query: 336 IVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +VG  GET D    T+ L  K+    A  F      GT      + 
Sbjct: 355 MVGNRGETRDSMERTLQLALKLKPDTAQFFPLMVYPGTRAYMWAKD 400


>gi|291548153|emb|CBL21261.1| 2-methylthioadenine synthetase [Ruminococcus sp. SR1/5]
          Length = 67

 Score = 85.4 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 32/67 (47%)

Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82
          +  +  + + GC++N Y+   M+ +    GYE V     AD+ V+NTC +   A  K   
Sbjct: 1  MGNKVALHNLGCKVNAYEIEAMQQLLEEAGYEIVPFEPGADIYVINTCTVTNIADRKSRQ 60

Query: 83 FLGRIRN 89
           L + + 
Sbjct: 61 MLHKAKK 67


>gi|193212987|ref|YP_001998940.1| radical SAM domain-containing protein [Chlorobaculum parvum NCIB
           8327]
 gi|193086464|gb|ACF11740.1| Radical SAM domain protein [Chlorobaculum parvum NCIB 8327]
          Length = 468

 Score = 85.4 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 42/219 (19%), Positives = 83/219 (37%), Gaps = 16/219 (7%)

Query: 168 GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDN-GVCEI 225
             + +K      +   +GC   C+FC  P   G     R +  V+DE R   +  G  ++
Sbjct: 188 SPHAKKYSQLIPILATKGCPVGCSFCTTPTVYGKSYRYREIDLVLDEMRAHQERLGKEKV 247

Query: 226 TLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLD 285
                   ++    +      F +LL  ++++     +R+  +   +       A     
Sbjct: 248 RF------SFMDDNISFRPKYFMELLEGMAKLG----VRWNANISMNFLHKPEVAEVAGR 297

Query: 286 VLMPYLHLPVQSGSDRILKSMNRRHTA-YEYRQIIDRIRSVRPDIAISSDFIVGFPGETD 344
                + +  +S +  ILK+MN+       Y   ++ +   +  IAI   F+ GF  + +
Sbjct: 298 SGCDLMSIGFESLNPDILKTMNKGSNRLQNYETAVNNLHKNK--IAIQGYFMFGFDDDNE 355

Query: 345 DDFRATMDLVDKIGYAQAFSFKYSPRLGTP-GSNMLEQV 382
             F+AT D + +           +P  GTP    M ++V
Sbjct: 356 KSFQATYDFIMQNRIEFPVFSLVTPFPGTPYFEEMKDRV 394


>gi|189347775|ref|YP_001944304.1| Radical SAM domain protein [Chlorobium limicola DSM 245]
 gi|189341922|gb|ACD91325.1| Radical SAM domain protein [Chlorobium limicola DSM 245]
          Length = 471

 Score = 85.4 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 54/307 (17%), Positives = 104/307 (33%), Gaps = 30/307 (9%)

Query: 71  HIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGP 130
            ++   A+K +    R+R           +L V + G       +      P  +++V  
Sbjct: 92  SVQTGMAKKAFELADRLRR---------NNLTVALGGAHVTLFPDSCR---PHADLLVHG 139

Query: 131 QTYYRLPELLE--RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
           +      E+LE  +A   K+    D   + +  R  I D     +   T  +    GC  
Sbjct: 140 EADDLWKEVLEDLKADVLKQEYSADRFPDLELSRPVIKDALIKSRYFTTNLIQTGRGCPY 199

Query: 189 FCTFCVVPYTRGI-EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTF 247
            C FC V    G     R +  +VDE  +   +       +  ++N        G+    
Sbjct: 200 NCDFCNVHVLNGRSLRRRKIGDIVDEVARFQQHDRRIFFFVDDSIN--------GDPAYA 251

Query: 248 SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307
            +L   L  I   +      +        L+++          L + ++S          
Sbjct: 252 EELFRRL--IPYRISWFGQATTALGRQPRLLESFARSG--CRALLVGIESVEAES--RNA 305

Query: 308 RRHTAYEYRQIIDRIRSVR-PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
            R T  +  +++D ++++R   I++   FI G  G+T D   A +D + +          
Sbjct: 306 HRKTQNKAEELVDAVKNIRSAGISLYGSFIYGLDGDTIDTPAAILDFIRETKLDVPGINI 365

Query: 367 YSPRLGT 373
             P  GT
Sbjct: 366 LRPIPGT 372


>gi|148262586|ref|YP_001229292.1| radical SAM domain-containing protein [Geobacter uraniireducens
           Rf4]
 gi|146396086|gb|ABQ24719.1| Radical SAM domain protein [Geobacter uraniireducens Rf4]
          Length = 471

 Score = 85.4 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 45/242 (18%), Positives = 85/242 (35%), Gaps = 17/242 (7%)

Query: 139 LLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
           +++R       +DT         R  + +    R++  TAF++   GC   C FC   + 
Sbjct: 162 IIDRTLQFVEDLDTVPFPARHLIRNELYENILTRRKNFTAFVS-SRGCPFNCAFCN--HN 218

Query: 199 RGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257
                +RS+  VVDE    +   G+ +  +      A R + +        ++     ++
Sbjct: 219 HQKYRTRSVQNVVDEIEMNLKQFGIRDFDIYDSTFTADRKRVI----AICEEIHRRKLKV 274

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
              VR R        ++  +I +          +   ++S +  ILK MN+  T     +
Sbjct: 275 GFTVRSRV-----DVITRDMIDSLKAAG--CHTIMYGIESSNPEILKRMNKGITPELVME 327

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
            +         I     F+ GFPGE  +    T++   K+    A      P+  T    
Sbjct: 328 KVQYTHQS--GIKALGFFLFGFPGENRETIEDTINFALKLPLDYALFSILLPQPETEIYE 385

Query: 378 ML 379
             
Sbjct: 386 YY 387


>gi|298529538|ref|ZP_07016941.1| Radical SAM domain protein [Desulfonatronospira thiodismutans
           ASO3-1]
 gi|298510974|gb|EFI34877.1| Radical SAM domain protein [Desulfonatronospira thiodismutans
           ASO3-1]
          Length = 447

 Score = 85.4 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 62/357 (17%), Positives = 117/357 (32%), Gaps = 62/357 (17%)

Query: 88  RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL-------- 139
           + L  +       + V + G       EE L +S  V+ VV  +  Y +  L        
Sbjct: 73  KALALAAQAREHQVPVALGGPHVSFLPEESL-KSGYVDYVVRGEGEYPMLYLAEFLAGER 131

Query: 140 -LERA------RFGKRVVDTDYSVEDKFERLS-------IVDGGYNRKRGVTAFLTIQ-E 184
            LE          G+ V + D  +    + L         +D          A   I   
Sbjct: 132 SLEDVPAVSYLLEGEAVHNPDQCIAKDIDSLPFPARDLLPMDKYRTHLNKKRATSMISSR 191

Query: 185 GCDKFCTFCVVPYTRG-IEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDG 242
           GC   C+FC      G    +R    + DE   +     V  I  +  N           
Sbjct: 192 GCPFNCSFCASSQLFGARWRAREPEAIFDEIEHVQQRYQVSNILFVDDNFT--------L 243

Query: 243 EKCTFSDLLYSLSEIK-GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
           +      +   + +    +  L ++  +    ++ +++   +    +  + L V+S   R
Sbjct: 244 DPQRTVRISELICKKDLNIQWLCFSRVNTIVENEDMVQGMAESG--VRMMFLGVESPDPR 301

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
           +L+S N++ TA    + ++ ++    D    + FI+G   E     + T+   +K+    
Sbjct: 302 VLESYNKKITAETSFRALEILKKYSIDAL--ASFIIGNLNEDSRMIKNTIRFANKLNPKT 359

Query: 362 AFSFKYSPRLGTPGSNMLEQV--------------------DENVKAERLLCLQKKL 398
           A     +P  GT    +  +V                     + V+AE L  L KK 
Sbjct: 360 AQFSILTPYPGT---RLYNEVKDRILTFDWSRYDGMHATIKPDRVRAEELERLIKKA 413


>gi|302806399|ref|XP_002984949.1| hypothetical protein SELMODRAFT_8473 [Selaginella moellendorffii]
 gi|302825388|ref|XP_002994314.1| hypothetical protein SELMODRAFT_8472 [Selaginella moellendorffii]
 gi|300137801|gb|EFJ04620.1| hypothetical protein SELMODRAFT_8472 [Selaginella moellendorffii]
 gi|300147159|gb|EFJ13824.1| hypothetical protein SELMODRAFT_8473 [Selaginella moellendorffii]
          Length = 89

 Score = 85.4 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 27/75 (36%), Positives = 43/75 (57%)

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
           +R+I+D +  + P+I I++D I GFPGET +DF   M+L+ +  + Q    ++ PR GTP
Sbjct: 3   FRKIVDTLTRLVPEIHIATDIICGFPGETSEDFDRIMELIREYTFPQVHISQFYPRPGTP 62

Query: 375 GSNMLEQVDENVKAE 389
            + M       VK  
Sbjct: 63  AALMKRVPTLEVKKR 77


>gi|116751500|ref|YP_848187.1| radical SAM domain-containing protein [Syntrophobacter fumaroxidans
           MPOB]
 gi|116700564|gb|ABK19752.1| Radical SAM domain protein [Syntrophobacter fumaroxidans MPOB]
          Length = 458

 Score = 85.0 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 54/274 (19%), Positives = 89/274 (32%), Gaps = 26/274 (9%)

Query: 108 CVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVD 167
           C A    +  L   P V+   G +T +               VD        ++     D
Sbjct: 135 CSALVGDDSRLESVPGVSYRAGGRTIHTPAAA---------PVDLSALPLPAYDLTVSRD 185

Query: 168 GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITL 227
            GY       A L    GC   CTFC+                     K       E+ L
Sbjct: 186 YGYELLGANMAVLETARGCPHSCTFCLKAMYGHGMR-----------EKNAAQVAAEVAL 234

Query: 228 LGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT-SHPRDMSDCLIKAHGDLDV 286
           +G N+       +D E C        L  I    RL +   +   D+   L+        
Sbjct: 235 VG-NLGYRCVYFIDLELCLKRHRTLELCGIMRRSRLPWACQTRVDDVEPELLGEMAASG- 292

Query: 287 LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDD 346
               +H  ++SG+    + + +  +  +    +   ++    IA +  F++GFP ET  D
Sbjct: 293 -CRLIHFGIESGASGTHRRLRKNISVTQTENAVRWAKAA--GIATAGFFLLGFPWETPKD 349

Query: 347 FRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           + AT  L  ++    A     +P   T    ML+
Sbjct: 350 WLATESLARRLNLTYASFHPVTPYPCTKLGEMLD 383


>gi|315425366|dbj|BAJ47032.1| Mg-protoporphyrin IX monomethyl ester oxidative cyclase [Candidatus
           Caldiarchaeum subterraneum]
 gi|315426546|dbj|BAJ48176.1| anaerobic magnesium-protoporphyrin IX monomethyl ester cyclase
           [Candidatus Caldiarchaeum subterraneum]
          Length = 459

 Score = 85.0 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 51/246 (20%), Positives = 88/246 (35%), Gaps = 22/246 (8%)

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTI-QEGCDKFCTFCVVPYTRGIEISRS 206
           + +D     +            Y R  G T    I   GC   C+FC  P    +   R 
Sbjct: 169 KDLDILGFPDRSLYDNETYKRYYLRNYGYTMTSMIASRGCPFSCSFCWRPDYGRVYRVRR 228

Query: 207 LSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI--KGLVRL 263
             ++VDE  ++    G   I    +   A +             ++    EI  + L  L
Sbjct: 229 PERIVDEMEEIRYRFGYERIWFADELFIANK-----------KHVIKICEEIISRKLDVL 277

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
               +    + D + K           +   +++G DR LK MN++ T  +  + +  + 
Sbjct: 278 WECLARADLIDDDVAKYMRKAG--CHKIIFGLEAGDDRTLKLMNKQLTVKQSEKAVKTV- 334

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
            VR  I     FI+G+PGET +    T+    ++           P  GT    + EQV 
Sbjct: 335 -VRHGIKAGGFFILGYPGETTETMLKTIKFASRLPLDYFSMTIPYPLPGT---KLYEQVK 390

Query: 384 ENVKAE 389
           + + +E
Sbjct: 391 DRMISE 396


>gi|238019482|ref|ZP_04599908.1| hypothetical protein VEIDISOL_01351 [Veillonella dispar ATCC 17748]
 gi|237864181|gb|EEP65471.1| hypothetical protein VEIDISOL_01351 [Veillonella dispar ATCC 17748]
          Length = 446

 Score = 85.0 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 43/250 (17%), Positives = 91/250 (36%), Gaps = 21/250 (8%)

Query: 136 LPELLERARFGKRVVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDKFCTFC 193
            P+++E A+ G+       +  +  + +     D            ++    C   C FC
Sbjct: 118 WPQIIEDAKHGRLQSQYVSAPLESGDDIASPAYDLIDKTDYLWYNVVSTSRSCPHRCDFC 177

Query: 194 VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS 253
                    I+R++  V+++ +KL   G   I  +  N          G        L  
Sbjct: 178 YNSSGTHQYINRNIEDVLEDIKKL---GTKHIMFIDDNFI--------GNISWTKQFLER 226

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR-RHTA 312
           +  +K       T    +     L+    +       L +  +S S + L S+++ ++  
Sbjct: 227 IKPLKLNWNAAVTMKIGQH--PELMDLMKETG--CQSLFIGFESISSQSLSSVHKMQNNR 282

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
            E+ ++I+ +      I +++ F+ G  G+T + F+ T++ +         S   +P  G
Sbjct: 283 EEFERLINELHKR--GIMVNASFVFGLDGDTPETFKNTLNWIISQKIDTITSHIVTPYPG 340

Query: 373 TPGSN-MLEQ 381
           T     M EQ
Sbjct: 341 TEFYKRMEEQ 350


>gi|110598714|ref|ZP_01386977.1| Cobalamin B12-binding:Radical SAM [Chlorobium ferrooxidans DSM
           13031]
 gi|110339659|gb|EAT58171.1| Cobalamin B12-binding:Radical SAM [Chlorobium ferrooxidans DSM
           13031]
          Length = 514

 Score = 85.0 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 61/333 (18%), Positives = 114/333 (34%), Gaps = 33/333 (9%)

Query: 59  MDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEIL 118
            ++ D+I      +   + E   S    I++LK    +     +++  G  A    E +L
Sbjct: 147 AENPDII-----GVTVMSHESSISARNFIQSLKIGIKESCTSPIIIAGGHGASMFPEPLL 201

Query: 119 RRSPIVNVVVGPQTYYRLPELLERARFGKR----------VVDTDYSVEDKFERLSIVDG 168
                  VV G      L  + +    G +          V      +    +RL+    
Sbjct: 202 EAGASA-VVFGEGEITLLQIIEQGIIPGAKGICCESKEGIVRGKPQPMVFPLDRLNTPAR 260

Query: 169 GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDN-GVCEIT 226
                 G    +    GC   C FC      G +    S S+V +E R+LI+      I 
Sbjct: 261 DLITNPGTVFLMETSRGCPHSCLFCETTRFYGRKWRPFSPSRVAEEVRELIEKYSAWIIH 320

Query: 227 LLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM--SDCLIKAHGDL 284
               N  A        +      +   L +   L  +   ++   D+  +  L++A    
Sbjct: 321 FADDNFAA--------DPQRVLSICEELQK-GPLPAVILASARADDLFSNPGLLEAMSSA 371

Query: 285 DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETD 344
            +    + + V+S      +   +R   + YR++  ++R+   DI   + FIVG PGE  
Sbjct: 372 HI--RRVTVGVESLDPFTARKAGKRVPLHVYREVFKKMRTC--DIFSVASFIVGLPGEIP 427

Query: 345 DDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
           +    ++    +     A    + P  GTP + 
Sbjct: 428 EARAKSVSFALEAAPDSAHFLPFLPLPGTPYAK 460


>gi|283785776|ref|YP_003365641.1| hypothetical protein ROD_20891 [Citrobacter rodentium ICC168]
 gi|282949230|emb|CBG88840.1| conserved hypothetical protein [Citrobacter rodentium ICC168]
          Length = 452

 Score = 85.0 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 58/325 (17%), Positives = 115/325 (35%), Gaps = 30/325 (9%)

Query: 61  DADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRR 120
           +ADLI      +    A + Y+     R            + VV+ G       +E    
Sbjct: 61  EADLI---GMTVITGTAPRAYALAASFRE---------KGMTVVLGGPHVTLLPQEAACH 108

Query: 121 SPIVNVVVGPQTYYR-LPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAF 179
           +  + V    Q++ + + + L            D+ ++D        +   ++     + 
Sbjct: 109 ADSLCVGYAEQSWPKLIADFLHGNLQPLYQQGDDFHLDDPQLPFPQRERFDSKHFLTQSV 168

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRG 237
                 C   C FCV P   G +     +  V+++ R+ +   G  +I  +  N+ +  G
Sbjct: 169 FEATRSCTHNCEFCVAPSAWGRKQFQHPVEWVINDIRQFVARTGKRKIIFIDLNLVSDIG 228

Query: 238 KGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQS 297
                 K  F+ L+    +  GL  +          +  L++           L L +++
Sbjct: 229 Y----AKALFNALIPLNVKWFGLSTVLIAH------NRELMELMARSG--CKGLLLGLET 276

Query: 298 GSDRILKSMNRRHTAY-EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
            SD  LK   ++     +Y+ +I  +  +   I++   F+ G   +T D F  T++L   
Sbjct: 277 ISDGSLKDAGKKFNGSVDYKTLIGDLHRL--GISVQGCFVFGLDHDTTDVFDRTVELAID 334

Query: 357 IGYAQAFSFKYSPRLGTPGSNMLEQ 381
            G         +P  GTP    LE+
Sbjct: 335 AGIDLPRFSVLTPFPGTPLYRRLEE 359


>gi|284161771|ref|YP_003400394.1| radical SAM protein [Archaeoglobus profundus DSM 5631]
 gi|284011768|gb|ADB57721.1| Radical SAM domain protein [Archaeoglobus profundus DSM 5631]
          Length = 458

 Score = 85.0 bits (209), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 41/231 (17%), Positives = 76/231 (32%), Gaps = 14/231 (6%)

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI-EISRSL 207
           + + D      ++ L +       ++     +    GC   C +C      G    +RS 
Sbjct: 161 IQNLDELPFPAYDLLPLEKYSVLGQKLEHFPMMSSRGCPFGCRYCASSLFMGRRFRARSA 220

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
             VVDE   L D         G +            K     +   + + +GL      +
Sbjct: 221 ENVVDEIEWLQDKFGARYVGFGDDTFTL-------NKKRVLKICEEI-KRRGLDVEWSCS 272

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL-KSMNRRHTAYEYRQIIDRIRSVR 326
           S    +    IK           ++  V+S + +IL +   +R +  + +  + + +   
Sbjct: 273 SRVDTIDGETIKKMKSAG--CNCIYYGVESANQKILNEYYRKRISLEQVKDAVKKTKE-- 328

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
             I     FI+G P ET +D   T+    K+    A     +P  GT    
Sbjct: 329 HGILTVCSFIIGAPMETREDMMKTLKFSIKLNPDYAQYSILTPYPGTEIYK 379


>gi|21674715|ref|NP_662780.1| BchE/P-methylase family protein [Chlorobium tepidum TLS]
 gi|21647924|gb|AAM73122.1| BchE/P-methylase family protein [Chlorobium tepidum TLS]
          Length = 500

 Score = 85.0 bits (209), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 68/334 (20%), Positives = 121/334 (36%), Gaps = 35/334 (10%)

Query: 55  RVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG 114
           R   +  ADL  ++   +++ +A +       I   K +       L VV  G +     
Sbjct: 59  RSEDIAWADLAFVSAMAVQQDSARE------AIARCKAA------GLPVVAGGPLFTTGY 106

Query: 115 EEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGY---- 170
            E     P V+  V  +    LP  +     G   V   Y   D+F  L           
Sbjct: 107 AEF----PEVDYFVLNEAEITLPRFIADLENG---VPERYYTADEFPALGCTPVPEWKLL 159

Query: 171 NRKRGVTAFLTIQEGCDKFCTFCVVPYTRG-IEISRSLSQVVDEARKLIDNG-VCEITLL 228
           + K+  +  +    GC   C FC V    G    +++ SQ++ E  +L  +G    +  +
Sbjct: 160 DMKQYASMAIQFSRGCPYRCDFCNVTALFGHKIRTKTSSQIIAELEELRRHGWQDSVFFV 219

Query: 229 GQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT-TSHPRDMSDCLIKAHGDLDVL 287
             N  A R      +K     L+    + KG     YT  S        L+K    +D  
Sbjct: 220 DDNFIAHR---AYLKKELLPALIEW-RKTKGATNEFYTECSINLADDAELMKLM--VDAG 273

Query: 288 MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR-PDIAISSDFIVGFPGETDDD 346
              + + +++     L++  ++H     R ++D IR ++   + +   FIVGF  +T   
Sbjct: 274 FNRVFIGIETPEVTALQACGKQHNTS--RDMLDNIRKIQNAGLEVQGGFIVGFDSDTPSI 331

Query: 347 FRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           F+  ++ + K G   A         GT     L+
Sbjct: 332 FQKQIEFIQKSGIVTAMVGILQALPGTKLYERLK 365


>gi|325968069|ref|YP_004244261.1| radical SAM protein [Vulcanisaeta moutnovskia 768-28]
 gi|323707272|gb|ADY00759.1| Radical SAM domain protein [Vulcanisaeta moutnovskia 768-28]
          Length = 562

 Score = 85.0 bits (209), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 75/394 (19%), Positives = 147/394 (37%), Gaps = 53/394 (13%)

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
             +  +    L +VV G       +   +R   ++VV   +     P+L ++   G+ + 
Sbjct: 159 HPAIKRHKDHLKIVVGGPAGWQIIDTGRQRELGIDVVYEGEFEEDGPQLFDKIMKGEPIP 218

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS-Q 209
           +   +       + I          +   + +  GC + C FC  P   G+  S      
Sbjct: 219 ERVVAHRP----VPIDMVPTIVTPSIGGMVEVTRGCGRGCQFC-TPTLSGMIRSFPFEGH 273

Query: 210 VVDEARKLID-NGVCEITLLGQNVNAWRGKGLDGEKCTFSDL---LYSLSEIKGLVRLR- 264
           +  E +  I+  G  EITL  +    +  KG++       DL    Y L +  G      
Sbjct: 274 IDREIKLNIEVGGFSEITLHSEEFFRYGAKGIEPNPDKVLDLTVKAYKLVKSYGDDHELT 333

Query: 265 --YTTSHPRDMSDCLIKAHGDLDV---LMPYLHLPVQSGSDRILKSMNR----RHTAYEY 315
             +TT+     +  LIK   +         ++ + +++GS R+L+ +       +   +Y
Sbjct: 334 TDFTTAAVVKYAPKLIKEVSEYMNEGGTWHFIEMGIETGSPRLLRMLMAGKALPYKPEQY 393

Query: 316 RQIIDRIRSVRPD--IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF--KYSP-- 369
             +++    +  D    +    I+  PGETDDD   +++L+D+I   +  +F   + P  
Sbjct: 394 PDVVEEAIGILNDNYWVVVGTMILNLPGETDDDVVKSLELLDRISKLRVLTFPLPFIPMG 453

Query: 370 ----RLGTPGSNMLEQVDENVKAERLLCLQKKLR--EQQVSFNDACVGQIIEVLIEKHGK 423
               R  T    ML+         R   L+  ++  E+  +F+          LI +  K
Sbjct: 454 ALRRRDFTILDKMLDDP-----LRREFILKALIKSFEEAKAFSS---------LITR--K 497

Query: 424 EKGKLVGRSPWLQSV-----VLNSKNHNIGDIIK 452
            +  +V R     +V     VL      +G +I+
Sbjct: 498 VENFIVKRLIGYIAVSSFNLVLKRYKEKLGSLIE 531


>gi|212223557|ref|YP_002306793.1| hypothetical protein TON_0411 [Thermococcus onnurineus NA1]
 gi|212008514|gb|ACJ15896.1| hypothetical protein, conserved [Thermococcus onnurineus NA1]
          Length = 581

 Score = 85.0 bits (209), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 73/455 (16%), Positives = 142/455 (31%), Gaps = 46/455 (10%)

Query: 57  NSMDDADLIV----LNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQA 112
             ++ AD+I+    L+T      A       +             GG   +  A      
Sbjct: 74  EILERADVIIYIGGLHTPGKYLSAVPSQVEEVALFLKPFKGIKILGGPAFMGSAHQGGTK 133

Query: 113 E-GEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERL--SIVDGG 169
               E++    + + +V       L +     R         Y     +  L   +V   
Sbjct: 134 ITSRELMFAQTVFDHIVYGDLEAFLYDFFRNPREADPFRFRTYDELRDYALLGAEVVTQF 193

Query: 170 YNRKRGVTAFLTIQEGCDK-----FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCE 224
            +    V   +  Q GC K      C+FC  P        RS+  +V E   L + GV  
Sbjct: 194 PDFPDFVIVEIETQRGCPKAMGIGGCSFCTEPVRYRKVEDRSIEDIVREVEVLYNLGVRH 253

Query: 225 ITLLGQNVNAWRGKGLDG-----EKCTFSDLLYSLSEIKGLVRLRYTT-------SHPRD 272
             +  Q+         +G            L   +  +   ++  +         ++  +
Sbjct: 254 FRVGRQSCIFSYMAKSNGRVPIPNPKAIERLFRGIRLVAPDIKTLHVDNANPAVIANYPE 313

Query: 273 MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV------- 325
            S  + KA  +       +   ++S   ++ K  N   TA E    +  +  V       
Sbjct: 314 ESREIAKALIEYGTPGNVVAFGLESADPKVAKLNNLNATAEETYNAVKLLNEVGGKRGYN 373

Query: 326 -RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR-----LGTPGSNML 379
             P +    + + G PGET   +  T   + K+        + + R      GTP  +M 
Sbjct: 374 GMPWLLPGINILFGLPGETKKSYELTFQFLKKLLDDGLMVRRINIRQVVVFPGTPLWHMR 433

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIE---VL--IEKHGKEKGKLVGR-SP 433
            +V +  K ++L  +Q    + +   +   + +++    VL  +     + G   GR   
Sbjct: 434 NRV-KTEKHKKL--IQHYKYKIRHEIDLPMLKRVVPVGTVLRDVRAEVYDNGLTYGRQIG 490

Query: 434 WLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
               +V   K   +     V I D    ++ G  +
Sbjct: 491 SYPLIVGIPKEVELNRFYDVLIVDHGFRSITGIPI 525


>gi|283833540|ref|ZP_06353281.1| BchE/P-methylase family protein [Citrobacter youngae ATCC 29220]
 gi|291071210|gb|EFE09319.1| BchE/P-methylase family protein [Citrobacter youngae ATCC 29220]
          Length = 436

 Score = 85.0 bits (209), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 59/304 (19%), Positives = 107/304 (35%), Gaps = 30/304 (9%)

Query: 88  RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147
           R  + +       + VV+ G  A    +E+ +     + VV         +LL  A  G+
Sbjct: 67  RGYQLADRYRQQGIKVVMGGFHATFMPDEVAK---HADCVVSGDAEGAWEQLLLDAERGE 123

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKR-GVTAFLTIQEGCDKFCTFCVVPYTRGI-EISR 205
                + S +   +   +    +  K     A +    GC   C FC +         +R
Sbjct: 124 LQSRYEGSRQRGLDDYRLDRSIFTDKHYAPLALIQYSRGCRFACDFCSIHAFYPDGVRTR 183

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            + Q+  E   L       I  +  N+ A R K            L SL  +   ++ R+
Sbjct: 184 PVEQIRAEIEALPP--GRFIAFVDDNLFASRKK------------LESLLAVLTPLKRRW 229

Query: 266 TTSHPRDMSDC--LIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR--RHTAYEYRQIIDR 321
                 D++    L+           +  +  +S +   L+ M +   H A +YRQ+I  
Sbjct: 230 GCQISIDVARDAALLDRLAQAG--CGFALMGFESLNSANLRQMGKQWNHAAGDYRQVIRA 287

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           + +    I +   FI G+ G+T D  R  +    +     A      P   TPGS++  +
Sbjct: 288 LHAR--GICVYGTFIFGYDGDTPDTVRQCLAFAQENRLEIANFNLLIP---TPGSSLYAR 342

Query: 382 VDEN 385
           + E 
Sbjct: 343 LKEE 346


>gi|86144554|ref|ZP_01062886.1| Radical SAM [Vibrio sp. MED222]
 gi|85837453|gb|EAQ55565.1| Radical SAM [Vibrio sp. MED222]
          Length = 403

 Score = 85.0 bits (209), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 61/330 (18%), Positives = 107/330 (32%), Gaps = 34/330 (10%)

Query: 56  VNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGE 115
            +  +DADL+V+              S     R  + +   +     V++ G   Q    
Sbjct: 52  ADLYNDADLVVI------------FMSTPDAYRAYELASKYKKKGKTVILGGLHTQFNS- 98

Query: 116 EILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRG 175
             L  +   + +   +      +LL  A FG      + S       L+           
Sbjct: 99  --LEAAVYADCLAMGEVENYWVQLLRDAEFGSLQPIYESSEPVDLSMLNPYPTNIINPEA 156

Query: 176 VTA--FLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVN 233
                 + +  GC   C FC+VP        R +  +V E   L   G+  + L   N+ 
Sbjct: 157 YNYTWSVVVTRGCPFKCNFCLVPRFFDKFQKRPIENIVSELADLKTLGIEWVELHSDNLT 216

Query: 234 AWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT-TSHPRDMSDCLIKAHGDLDVLMPYLH 292
             R   L   K            I+ L    Y  T+        L+     +      + 
Sbjct: 217 HDREYALALFKA-----------IEPLNMSFYGETTVLIARDTELLS--AAVKSGFKAVL 263

Query: 293 LPVQSGSDRILKSMNRRH-TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351
           L +++ S+  LK+  +      + ++ I  IRS    I +  DF+ GF       F+ T 
Sbjct: 264 LGIETPSEEALKAQKKGFVKPSKMKEYIAEIRS--HGIEVWGDFLFGFDEHDTSIFKQTQ 321

Query: 352 DLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
             V+ I   +       P  G+   + LE+
Sbjct: 322 KFVEDIKVDKVIPHYMIPFPGSESFSQLER 351


>gi|21674771|ref|NP_662836.1| magnesium-protoporphyrin IX monomethyl ester oxidative cyclase, 66
           kDa subunit [Chlorobium tepidum TLS]
 gi|13899149|gb|AAG12414.1| BchE [Chlorobaculum tepidum]
 gi|21647985|gb|AAM73178.1| magnesium-protoporphyrin IX monomethyl ester oxidative cyclase, 66
           kDa subunit [Chlorobium tepidum TLS]
          Length = 546

 Score = 84.6 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 69/435 (15%), Positives = 139/435 (31%), Gaps = 77/435 (17%)

Query: 43  RMEDMFFSQGYERVNSMDD-AD---------LI------VLNTCHIREKAAEKVYSFLGR 86
            +       G+ +V  +D  AD         +I      V+ T +I           + +
Sbjct: 28  YIGGALKQAGFNQVKFVDAMADDLPDETIEEIIRKNQPDVVMTTNITPS--------IFK 79

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA--- 143
            +++     K   ++  ++ G  +     ++L  +P  + VV  +       L++     
Sbjct: 80  AQDIMKIAKKVNKNIRTIMGGIHSTFMYPQVLTEAPETDYVVRGEGEEVTVNLMKAIAAG 139

Query: 144 ----------------RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT-------AFL 180
                             GK      + V +  + LS     Y+  + +        A  
Sbjct: 140 NDKETRSEITGIAYIDENGKVFATAAHPVIEDLDTLSPDWSLYDWDKYIYTPLNCRLAVP 199

Query: 181 TIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKG 239
               GC   CTFC          +RS    VDE   L+    V    L  +     + K 
Sbjct: 200 NFARGCPFTCTFCSQWQFWRRYRARSPKNFVDEIEILVKKYKVGFFILADEEPTINKQKF 259

Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
           +        +L+    ++   +  R T     +    L+  +    ++  ++ L  ++ S
Sbjct: 260 V----SLCQELIDRKLDVTWGINTRVTDIMRDE---DLLPFYRKAGLV--HVSLGTEAAS 310

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
              L    +  T  E +  I  ++     I   + F++G   ET +    T  L      
Sbjct: 311 QMNLNRFRKETTIEENKYAIKLLQKN--GIVAEAQFVMGLEHETPETIEETYQLCKDWDP 368

Query: 360 AQAFSFKYSPRLGTPGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEV 416
             A    Y+P    P S++ +++ + V+     R   +   ++   +   D   G    V
Sbjct: 369 DMANWTIYTPW---PFSDLFKELGDRVEVRDYSRYNFVSPIIKPDNMEREDVLKG----V 421

Query: 417 LIEKHGKEKGKLVGR 431
           L     K  G+   R
Sbjct: 422 L-----KSYGRFYAR 431


>gi|39995348|ref|NP_951299.1| radical SAM domain-containing protein [Geobacter sulfurreducens
           PCA]
 gi|39982110|gb|AAR33572.1| radical SAM domain protein [Geobacter sulfurreducens PCA]
 gi|298504352|gb|ADI83075.1| cobalamin-binding radical SAM domain iron-sulfur cluster-binding
           oxidoreductase [Geobacter sulfurreducens KN400]
          Length = 461

 Score = 84.6 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 59/359 (16%), Positives = 118/359 (32%), Gaps = 49/359 (13%)

Query: 48  FFSQGYER-------VNSMDDA----------DLIVLNTCHIREKAAEKVYSFLGRIRNL 90
             + G+E            ++A            +++    +R             +  +
Sbjct: 29  LEAAGHELRALDLCFEADPEEAVTAALADFTPQAVII---SVRNIDNVTWPGSRSYVAGV 85

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
           K    +  G    ++ G        E+L  +     V G +    LPELL     G+   
Sbjct: 86  KAIVDRCRGIATTILGGSGFSLMPAELLAFTGGDLGVAG-EGEEILPELLACIERGESPA 144

Query: 151 DTD--------YSVEDKFERLSIVDGG-----YNRKRGVTAFLTIQEGCDKFCTFCVVPY 197
                      ++     ER++  D         R+ G  A +  + GC   C +C  P 
Sbjct: 145 GLPGVVAGAGAFAPPRPVERIAAPDRRLFALARYRREGGMANIQTKRGCPFGCIYCTYPL 204

Query: 198 TRG-IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256
             G     R  +++V E R+L D G+  +  +    N             F++ L     
Sbjct: 205 LEGRRMRLRPTAEIVAELRELADAGIDYVYFVDDIFNY---------PPDFAEELCRAMI 255

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
             GL        +P+ ++  L+++   +      +     SGS  +L+++ +     + R
Sbjct: 256 ASGLTMGWSAFINPQFITPRLMESM--VAAGCDAVEFGTDSGSPAMLRNLGKSFGVAQIR 313

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP-RLGTP 374
           +     R +   +  +   + G PGET      +  L+D++      +        GTP
Sbjct: 314 ESSRICREL--GVDFAHYILFGGPGETPATIAESFALMDEVAPTAVIAMTGIRIFPGTP 370


>gi|254167285|ref|ZP_04874137.1| radical SAM domain protein [Aciduliprofundum boonei T469]
 gi|197623548|gb|EDY36111.1| radical SAM domain protein [Aciduliprofundum boonei T469]
          Length = 459

 Score = 84.6 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 49/305 (16%), Positives = 99/305 (32%), Gaps = 42/305 (13%)

Query: 95  IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDT-- 152
            K   ++ +V+ G       E   +  P ++ +V  +      EL++     +   +   
Sbjct: 87  KKINENVKIVMGGPHVTFTPERTFKECPCIDYIVRGEGELTFKELVDALDKNRDPSNILG 146

Query: 153 -------------DYSVEDKFERLSIVDGGYNRKRGVTA------FLTIQEGCDKFCTFC 193
                           +    + + I            A       +    GC   C FC
Sbjct: 147 LSINMGDKVKNNLARPLIKDVDSIPIPSYDLLPMDKYQADGVKFGTIMTSRGCPFNCAFC 206

Query: 194 VV-----PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS 248
                     RG   SR + + +   R+  + G  EI  L               +    
Sbjct: 207 SSSLQFGKRWRGHSDSRVIEE-LKILRE--EYGRKEIEFLDDTFT--------LNRPRAI 255

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
            +   + + +GL      +S     ++ + +A          ++  ++SGS + L  + +
Sbjct: 256 RISKMIRK-EGLDISWTASSRVDIFTNEVAEALKYGG--CHTVYFGIESGSQKTLDFIGK 312

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
           R T  +   +    ++    +     FI+GFP ET +D + T+    K+G   A     +
Sbjct: 313 RITPKQ--SLAAVKKAKAHKLHALGAFIIGFPEETKEDIKKTIKFSKKVGVDYAQFTVAT 370

Query: 369 PRLGT 373
           P  GT
Sbjct: 371 PYPGT 375


>gi|145219858|ref|YP_001130567.1| radical SAM domain-containing protein [Prosthecochloris
           vibrioformis DSM 265]
 gi|145206022|gb|ABP37065.1| Radical SAM domain protein [Chlorobium phaeovibrioides DSM 265]
          Length = 469

 Score = 84.6 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 42/209 (20%), Positives = 79/209 (37%), Gaps = 17/209 (8%)

Query: 171 NRKRGVTAFLTI--QEGCDKFCTFCVVPYTRGI-EISRSLSQVVDEARKLIDN-GVCEIT 226
            R +  ++ + I   +GC   C FC  P   G     R L  V+DE R   +  G     
Sbjct: 190 KRSKKYSSRIPILATKGCPVGCNFCTTPTIYGKNYRYRELDLVLDEMRYHQERLGKKSAN 249

Query: 227 LLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV 286
                  ++    +      F  LL  +S++ G+      + +  D  +    A      
Sbjct: 250 F------SFMDDNISFRPKYFLTLLEEMSKL-GIHWNANISMNFLDKPEV---AELAGRS 299

Query: 287 LMPYLHLPVQSGSDRILKSMNRRHTA-YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDD 345
               L +  ++ +   +KS+++       Y ++++ +      IAI   F+ GF  +T++
Sbjct: 300 GCDLLSIGFETLNPETIKSVHKGSNKIGNYEKVVNNLHQN--GIAIQGYFMFGFDNDTEE 357

Query: 346 DFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
            F+ T D + K           +P  GTP
Sbjct: 358 SFQLTYDFIMKNRIEFPVFSLVTPFPGTP 386


>gi|163849203|ref|YP_001637247.1| magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative
           cyclase [Chloroflexus aurantiacus J-10-fl]
 gi|222527181|ref|YP_002571652.1| magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative
           cyclase [Chloroflexus sp. Y-400-fl]
 gi|163670492|gb|ABY36858.1| magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative
           cyclase [Chloroflexus aurantiacus J-10-fl]
 gi|222451060|gb|ACM55326.1| magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative
           cyclase [Chloroflexus sp. Y-400-fl]
          Length = 549

 Score = 84.6 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 54/317 (17%), Positives = 107/317 (33%), Gaps = 40/317 (12%)

Query: 99  GDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA--------------- 143
            +  +++ G        ++L  +P ++ +V  +    + EL++                 
Sbjct: 92  PNARLILGGIHPTFMYGQVLTEAPWIDYIVRGEGEEIIVELMQAIAYGSDQRDRVKIRGI 151

Query: 144 ---RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGV-------TAFLTIQEGCDKFCTFC 193
                GK V           ++L+     Y+ KR +        A      GC   C FC
Sbjct: 152 AYLEDGKVVATPARDPIADLDKLTPDWSLYDWKRYIYVPLNVRVAVPNFARGCPFTCRFC 211

Query: 194 VVPYTRGIEISRSLSQVVDEARKLI-DNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLY 252
                     +RS  + VDE   L+ D  V    L  +     R K          +L+ 
Sbjct: 212 SQWKFWRRYRARSPQKFVDEIETLVRDYNVGFFILADEEPTINRKKFT----ALCEELIR 267

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
               +   +  R T     +    L +A G     + ++ L  ++ +   L    ++ T 
Sbjct: 268 RQVRVYWGINTRVTDILRDEAQLPLWRAAG-----LVHISLGTEAAAQMNLDRFRKQTTI 322

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
            + ++ I+ I+     +   + FI+G   ET +    T   V       A    Y+P   
Sbjct: 323 EQNKRAIELIKK--HGMVAEAQFIMGMENETPETIEETYRYVLDWKPDMANWNMYTPW-- 378

Query: 373 TPGSNMLEQVDENVKAE 389
            P + + E++ + V+  
Sbjct: 379 -PFAELFEELGDRVEVR 394


>gi|325291304|ref|YP_004267485.1| Radical SAM domain protein [Syntrophobotulus glycolicus DSM 8271]
 gi|324966705|gb|ADY57484.1| Radical SAM domain protein [Syntrophobotulus glycolicus DSM 8271]
          Length = 599

 Score = 84.6 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 45/281 (16%), Positives = 98/281 (34%), Gaps = 22/281 (7%)

Query: 99  GDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG------------ 146
            +   ++ G     +   IL+ +P  + ++  +    LPELL+  R G            
Sbjct: 89  PETRFILGGPEVSYDSAAILKNNPQADAIIVGEGELILPELLQAWRMGLDPENIPGVLWR 148

Query: 147 ---KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI-- 201
              K V ++  ++  +   L          RG   ++    GC   C+FC+    +G+  
Sbjct: 149 HKDKIVSNSREALLPELNHLPNPYSEPEDLRGKLVYVETTRGCPFHCSFCISSALKGVRY 208

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
             S     ++    +    G   +  + +  N  +            +        + + 
Sbjct: 209 LESSKFRAILRNILQY---GARTVKFVDRTFNVRKAHAFAILDIFKEEAAKYAGAGQDVP 265

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           R     +    + +  +         M  L + VQS     L+++ RR    ++++ I +
Sbjct: 266 RAHCEMAGEL-LDEDWLDYLAAYPKGMLQLEIGVQSTFQPTLEAIARRQNFEDWQEKIRK 324

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           I     +I +  D I G P E   +F+ + + V K+   + 
Sbjct: 325 I-QHEDNIPVHLDLIAGLPEEGPAEFKKSFNDVYKVRPDRL 364


>gi|15921106|ref|NP_376775.1| hypothetical protein ST0873 [Sulfolobus tokodaii str. 7]
 gi|15621891|dbj|BAB65884.1| 492aa long conserved hypothetical protein [Sulfolobus tokodaii str.
           7]
          Length = 492

 Score = 84.6 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 59/307 (19%), Positives = 117/307 (38%), Gaps = 30/307 (9%)

Query: 79  KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPE 138
           K +  LG     K  +IK   D+ VVV G  A    +E       ++VV         PE
Sbjct: 87  KFFEELGE----KIKKIKSKYDIKVVVGGAGAWQLEKE---PPEWIDVVFIGHAEIDFPE 139

Query: 139 LLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
           ++++   G++V     +   K  +LS +    N  RG    + I  GC + C FC V   
Sbjct: 140 IVKKLEEGEKVPRVVKARYPK--KLSEIPPIINAARG--GEVQITRGCPRGCWFCSVTPD 195

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258
               IS  +  ++ E    +  G+ +++L+  ++  +  K L   +     ++   +E+K
Sbjct: 196 T--FISFPIDYILKEVEVNMRAGIKDVSLITDDMMLYGAKSL--REVNHDAIIRLYTELK 251

Query: 259 GLVRLRYTTSHPRDMSDCL-IKAHGDLDVLMPYLH-------LPVQSGS----DRILKSM 306
                    +H       L  +   ++  +  +         + +++GS    ++ +K  
Sbjct: 252 KAGVDYINFAHISAAPVKLSPRTIKEMSEIAGWNEQKAVSPVVGLETGSEKIFNKYMKMK 311

Query: 307 NRRHTAYEYRQIIDRIRSVRPD--IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
                   ++ +I    ++  D  I       +G+P ETD+D   ++ LV+ I       
Sbjct: 312 AFPWGYNNWKDLIVEATAIMNDSYIYPCYTMTIGYPDETDEDVEQSIKLVEYI-IDHKPI 370

Query: 365 FKYSPRL 371
               P  
Sbjct: 371 AWIFPLP 377


>gi|10198136|gb|AAG15204.1|AF288458_3 BchE [Chloroflexus aurantiacus]
          Length = 549

 Score = 84.6 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 54/317 (17%), Positives = 107/317 (33%), Gaps = 40/317 (12%)

Query: 99  GDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA--------------- 143
            +  +++ G        ++L  +P ++ +V  +    + EL++                 
Sbjct: 92  PNARLILGGIHPTFMYGQVLTEAPWIDYIVRGEGEEIIVELMQAIAYGSDQRDRVKIRGI 151

Query: 144 ---RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGV-------TAFLTIQEGCDKFCTFC 193
                GK V           ++L+     Y+ KR +        A      GC   C FC
Sbjct: 152 AYLEDGKVVATPARDPIADLDKLTPDWSLYDWKRYIYVPLNVRVAVPNFARGCPFTCRFC 211

Query: 194 VVPYTRGIEISRSLSQVVDEARKLI-DNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLY 252
                     +RS  + VDE   L+ D  V    L  +     R K          +L+ 
Sbjct: 212 SQWKFWRRYRARSPQKFVDEIETLVRDYNVGFFILADEEPTINRKKFT----ALCEELIR 267

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
               +   +  R T     +    L +A G     + ++ L  ++ +   L    ++ T 
Sbjct: 268 RQVRVYWGINTRVTDILRDEAQLPLWRAAG-----LVHISLGTEAAAQMNLDRFRKQTTI 322

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
            + ++ I+ I+     +   + FI+G   ET +    T   V       A    Y+P   
Sbjct: 323 EQNKRAIELIKK--HGMVAEAQFIMGMENETPETIEETYRYVLDWKPDMANWNMYTPW-- 378

Query: 373 TPGSNMLEQVDENVKAE 389
            P + + E++ + V+  
Sbjct: 379 -PFAELFEELGDRVEVR 394


>gi|78188899|ref|YP_379237.1| Elongator protein 3/MiaB/NifB [Chlorobium chlorochromatii CaD3]
 gi|78171098|gb|ABB28194.1| Elongator protein 3/MiaB/NifB [Chlorobium chlorochromatii CaD3]
          Length = 465

 Score = 84.6 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 41/205 (20%), Positives = 76/205 (37%), Gaps = 15/205 (7%)

Query: 174 RGVTAFLTI--QEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVCEITLLGQ 230
           +  +A + I   +GC   C FC  P   G     R L  V+DE R   +    +      
Sbjct: 189 KKYSALIPILATKGCPVGCNFCTTPTIYGKSFRYRELDLVLDEMRYHQNRLGKQKV---- 244

Query: 231 NVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY 290
              ++    +      F  LL  ++++ G+      + +  D  +    A          
Sbjct: 245 -NFSFMDDNISFRPQYFMTLLEEMAKL-GVHWNANISMNFLDKPEV---AELAGRSGCDL 299

Query: 291 LHLPVQSGSDRILKSMNRRHTA-YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           L +  +S +   LK++++       Y  ++  +      IAI   F+ GF  +T++ F+ 
Sbjct: 300 LSIGFESLNPETLKTVHKGSNRLGNYETVVSNLHKN--GIAIQGYFMFGFDNDTEESFQL 357

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTP 374
           T D + K           +P  GTP
Sbjct: 358 TYDFIMKNRIEFPVFSLVTPFPGTP 382


>gi|29827390|ref|NP_822024.1| methyltransferase [Streptomyces avermitilis MA-4680]
 gi|15824240|dbj|BAB69397.1| methyltransferase [Streptomyces avermitilis]
 gi|29604489|dbj|BAC68559.1| putative methyltransferase [Streptomyces avermitilis MA-4680]
          Length = 543

 Score = 84.6 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 45/198 (22%), Positives = 77/198 (38%), Gaps = 14/198 (7%)

Query: 175 GVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA 234
           GVTA L     C   C+FC  P   G   + S+  V  E R + + GV  I  +    N 
Sbjct: 241 GVTAQLRTARSCAFKCSFCDYPSRAGALAAASVDTVRKELRAMAELGVKNIVFVDDTFNV 300

Query: 235 WRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP 294
                       F ++   + E    +R            +       +       + L 
Sbjct: 301 P--------PKRFKEICRMMIEEDLGLRWYSYFRCSNARDEEAFDLAAESG--CSGVFLG 350

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           ++SG   IL +M++     +YR  ++R+     DI   +  IVGFPGE       T+D +
Sbjct: 351 IESGDTEILANMHKLAQDSQYRVGLERLNER--DITTFASIIVGFPGENARTVSNTVDFL 408

Query: 355 DKIG--YAQAFSFKYSPR 370
           ++    + +A ++  +PR
Sbjct: 409 NETKPTFWRAQAWWANPR 426


>gi|121998404|ref|YP_001003191.1| magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative
           cyclase [Halorhodospira halophila SL1]
 gi|121589809|gb|ABM62389.1| magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative
           cyclase [Halorhodospira halophila SL1]
          Length = 558

 Score = 84.6 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 54/303 (17%), Positives = 107/303 (35%), Gaps = 34/303 (11%)

Query: 95  IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVV---GPQTYYRLPELLER--------- 142
            +   +++ ++ G       +++L  +P ++ VV   G +    L   ++          
Sbjct: 88  KEVDPNVVTLIGGIHPTFMYKQVLSEAPWIDAVVRGEGEEIMVNLARAIDEGRWPSDRES 147

Query: 143 -----ARFGKRVVDTDY--------SVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKF 189
                 R G+++V T          S+E  +  L      Y       A   +  GC   
Sbjct: 148 ILGIAYRDGEQIVATPAAPTIKDLDSIEPDWGILEWEKYTYIPLNTRVAIPNMARGCPFT 207

Query: 190 CTFCVVPYTRGIEISRSLSQVVDEARKLIDNG-VCEITLLGQNVNAWRGKGLDGEKCTFS 248
           C+FC           R   +VVDE  KL D   V    L  +     R K ++       
Sbjct: 208 CSFCSQWKFWRDYRIRDPKKVVDEIEKLADEHDVGFFILADEEPTINRKKFIEF----CQ 263

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
           +L+      +G++    T        + L+  +    ++  ++ L  ++ +   L   N+
Sbjct: 264 ELIDRGLPDRGILWGINTRVTDVLRDEELLSFYRKAGLI--HVSLGTEAAAQLKLDRFNK 321

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
             T  + ++ I+ +R+    I + + FIVG   ET +    T  +        A    Y+
Sbjct: 322 ETTVAQNKKAIELLRNA--GIVVEAQFIVGLENETAETLEETYQMAQDWKPDLANWAMYT 379

Query: 369 PRL 371
           P  
Sbjct: 380 PWP 382


>gi|326790413|ref|YP_004308234.1| radical SAM protein [Clostridium lentocellum DSM 5427]
 gi|326541177|gb|ADZ83036.1| Radical SAM domain protein [Clostridium lentocellum DSM 5427]
          Length = 441

 Score = 84.6 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 64/325 (19%), Positives = 112/325 (34%), Gaps = 36/325 (11%)

Query: 61  DADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRR 120
           +ADLI + TC      A + Y++    R            + V + G       EE    
Sbjct: 60  EADLIGI-TC--ITGTAPRCYAYGDYFRK---------KGIKVFIGGVHPSIMPEEAAL- 106

Query: 121 SPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFL 180
               +VV+   + +  P++L+    G+           K E   I       K+G     
Sbjct: 107 --HADVVMTGFSEFTFPQMLKDFIRGELKPIYHQGCNFKIEGRPIPRRELLNKKGYITTN 164

Query: 181 TIQ--EGCDKFCTFCVVPYTRGIEIS-RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG 237
           T++   GC   CTFC  P   G  +  R + +VV E           I     N+     
Sbjct: 165 TVELVRGCSHPCTFCAYPTAFGRTVYKRPIEEVVAEI---AALNAKIIVFPDVNLII--- 218

Query: 238 KGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQS 297
             ++  K  F  L+        +  L   TSH   M D L+K           L +  +S
Sbjct: 219 -DIEYAKKLFKALIPL-----KIYWLGLVTSH-VGMDDELLKIFEKSG--CKGLLIGFES 269

Query: 298 GSDRILKSMNRR-HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
            S      +++  +    Y ++++++ +    I +   F  G   E    F  T+++V K
Sbjct: 270 ISQESQAYVHKGVNQVASYAELMNKLHA--HGILVQGCFAFGGDHEDTSVFERTVEMVTK 327

Query: 357 IGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +          +P   T     L++
Sbjct: 328 VKIDLPRYSILTPFPKTELYRQLDK 352


>gi|218782942|ref|YP_002434260.1| radical SAM domain protein [Desulfatibacillum alkenivorans AK-01]
 gi|218764326|gb|ACL06792.1| Radical SAM domain protein [Desulfatibacillum alkenivorans AK-01]
          Length = 484

 Score = 84.6 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 77/223 (34%), Gaps = 12/223 (5%)

Query: 153 DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVD 212
            +     F              GV   +    GC   C FC          +RS+  VVD
Sbjct: 181 PFPAWHLFPYHLYECHPLFGVNGVCLPVIASRGCPYSCFFCAQASAFNGVRARSVQNVVD 240

Query: 213 EARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
           E   L+D            ++               D    L + K   +L + T    D
Sbjct: 241 EMEYLLD------RFNAP-MSGLADCMYPLTHKMGMDFCRQLIDRKLHTKLCWATEMRVD 293

Query: 273 M-SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAI 331
           M    L+    + + +   +   V+SG++ +L+ + ++    + R+ I   +     ++ 
Sbjct: 294 MAEPELLGIMKEANAI--QIAYGVESGNEAMLQRLGKKFKMEDARRAIALTKQA--GLST 349

Query: 332 SSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
              F++GFPGET    R T+    ++    A      P  GTP
Sbjct: 350 CGFFVLGFPGETPSSCRDTIRFAKELDLDFAKFNIAVPYPGTP 392


>gi|258621979|ref|ZP_05717008.1| conserved hypothetical protein [Vibrio mimicus VM573]
 gi|258585732|gb|EEW10452.1| conserved hypothetical protein [Vibrio mimicus VM573]
          Length = 95

 Score = 84.6 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 409 CVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
            +G    +L+E   K+   +L GR+   + V        IG  + V+I DV  ++L GEL
Sbjct: 1   MLGTEQRILVEGPSKKDLMELRGRTENNRVVNFEGSPELIGQFVDVKIVDVFANSLRGEL 60

Query: 468 V 468
           V
Sbjct: 61  V 61


>gi|220932195|ref|YP_002509103.1| Radical SAM domain protein [Halothermothrix orenii H 168]
 gi|219993505|gb|ACL70108.1| Radical SAM domain protein [Halothermothrix orenii H 168]
          Length = 446

 Score = 84.6 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 52/332 (15%), Positives = 114/332 (34%), Gaps = 35/332 (10%)

Query: 59  MDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEIL 118
            +DADL+ L        A         R   +     + G   ++      A    +E  
Sbjct: 56  YEDADLVGLT--AFTSSA--------TRAYEIAKQYRERGIPTIIGGI--HASMMPDEAK 103

Query: 119 RRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTA 178
           +    V+ VV  +     PE++     GK +     S  ++ + +            +  
Sbjct: 104 Q---YVDTVVIGEAEGIWPEVISDFEEGK-LKKIYQSKLNEADIIPKARHDLFHPGYMFG 159

Query: 179 FLTIQEGCDKFCTFCVVPYTRG-IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG 237
            +    GC   C FC V    G     R +  V+DE   +       I  +  N+    G
Sbjct: 160 AVQTARGCPMDCEFCSVTQFNGYKYRQRPIKDVLDELESIPQ---KMIFFVDDNIL---G 213

Query: 238 KGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQS 297
            G +  +         ++   G+ +  +  +      +  +  +         + + +++
Sbjct: 214 HGKNANERAIKLFKGMINR--GIKKEWFCQASINFAENEEVLKYAA-KSGCKMVFIGLEA 270

Query: 298 GSDRILKSMNRRHTAY----EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
                L S+N++        +Y+ +ID+I S +  IA+   FI G   +T +  +  ++ 
Sbjct: 271 EDVESLDSVNKKMNIKVGSNKYKDVIDKINSYK--IAVLGSFIYGLDNDTIESLQRRIEY 328

Query: 354 VDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
           + K       +   +P  GT    + +++ + 
Sbjct: 329 IIKCPVDVMQTTILTPLPGT---RLFKKLSDE 357


>gi|193211932|ref|YP_001997885.1| magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative
           cyclase [Chlorobaculum parvum NCIB 8327]
 gi|193085409|gb|ACF10685.1| magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative
           cyclase [Chlorobaculum parvum NCIB 8327]
          Length = 546

 Score = 84.2 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 68/435 (15%), Positives = 139/435 (31%), Gaps = 77/435 (17%)

Query: 43  RMEDMFFSQGYERVNSMDD-AD---------LI------VLNTCHIREKAAEKVYSFLGR 86
            +       G+ +V  +D  AD         +I      V+ T +I           + +
Sbjct: 28  YIGGALKQAGFNQVKFVDAMADDLPDETIEEIIRKNQPDVVMTTNITPS--------IFK 79

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA--- 143
            +++     K   ++  ++ G  +     ++L  +P  + VV  +       L++     
Sbjct: 80  AQDIMKIAKKVNKNIRTIMGGIHSTFMYPQVLTEAPETDYVVRGEGEEVTVNLMKAIAAG 139

Query: 144 ----------------RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT-------AFL 180
                             G+      + V +  + LS     Y+  + +        A  
Sbjct: 140 NDKETRSEITGIAYIDEKGEVFATAAHPVIEDLDTLSPDWSLYDWDKYIYTPLNCRLAVP 199

Query: 181 TIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKG 239
               GC   CTFC          +RS    VDE   L+    V    L  +     + K 
Sbjct: 200 NFARGCPFTCTFCSQWQFWRRYRARSPKNFVDEIEILVKKYNVGFFILADEEPTINKQKF 259

Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
           +        +L+    ++   +  R T     +    L+  +    ++  ++ L  ++ S
Sbjct: 260 V----SLCQELIDRKLDVTWGINTRVTDIMRDE---DLLPFYRKAGLV--HVSLGTEAAS 310

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
              L    +  T  E +  I  ++     I   + F++G   ET +    T  L      
Sbjct: 311 QMNLNRFRKETTIDENKYAIKLLQKN--GIVAEAQFVMGLEHETPETIEETYQLCKDWDP 368

Query: 360 AQAFSFKYSPRLGTPGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEV 416
             A    Y+P    P S++ +++ + V+     R   +   ++   +   D   G    V
Sbjct: 369 DMANWTIYTPW---PFSDLFKELGDRVEVRDYSRYNFVSPIIKPDNMEREDVLKG----V 421

Query: 417 LIEKHGKEKGKLVGR 431
           L     K  G+   R
Sbjct: 422 L-----KSYGRFYAR 431


>gi|284518800|gb|ADB92517.1| B12-dependent radical SAM family protein [Desulfotignum
           phosphitoxidans]
          Length = 459

 Score = 84.2 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 59/332 (17%), Positives = 118/332 (35%), Gaps = 46/332 (13%)

Query: 94  RIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR----- 148
             ++  D+ +++ G  A ++ EEI++  P V++VV  +    +  LL             
Sbjct: 88  YKRKHPDVKIIMGGVHASSQPEEIMKLCP-VDIVVRGEGEETIVSLLRAIEKNNDLNEVH 146

Query: 149 ------------------VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190
                             + + D      +  L  ++      R     L    GC   C
Sbjct: 147 GISYRKDKEIRHTPDRPLIKNLDEIPYPAYHLLEPIEKYQPLNRKYVFSLIASRGCPYKC 206

Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFSD 249
            FC        +  R+   ++ E + L DN  V  +      +   R   L+     F  
Sbjct: 207 IFCSANRLWKYQRRRNPKNILGEIKWLKDNYDVGFLRFEDDGLTNKRDWALE-----FFV 261

Query: 250 LLYSLSEIKGLVRLRYTTSHPRD-MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
            L  LS       + +      D +   L+ A  D   +  Y    ++S S R+LK + +
Sbjct: 262 SLKELS-------IHFDCLTRIDKVDSELLLAMRDAGCIGVYH--GIESASPRLLKLLRK 312

Query: 309 RHTAYEYRQIIDR--IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY--AQAFS 364
               +   + I +     V   +  +   ++G P ET  + + T DLV ++    A+   
Sbjct: 313 GFPKWVNIEYIKKTIAEEVSLGLVPTVSAMIGIPTETKKEIQLTFDLVCELKRLGAKTQL 372

Query: 365 FKYSPRLGTPGSNMLEQVDENVKAERLLCLQK 396
           +  +P   T   ++ ++  E +  +R   L++
Sbjct: 373 WLMTPYPDTEAVSLYKE--ELIMIDRWKELKQ 402


>gi|78186044|ref|YP_374087.1| Elongator protein 3/MiaB/NifB [Chlorobium luteolum DSM 273]
 gi|78165946|gb|ABB23044.1| Elongator protein 3/MiaB/NifB [Chlorobium luteolum DSM 273]
          Length = 479

 Score = 84.2 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 52/328 (15%), Positives = 111/328 (33%), Gaps = 41/328 (12%)

Query: 54  ERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAE 113
           E      + DLI +    ++   A + +    R+R+            LV + G      
Sbjct: 78  ELFPDHVEWDLIGI---SVQTGTASEAFELADRLRS---------QGTLVALGGPHVTMF 125

Query: 114 GEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRK 173
            E   R     +++V  +       +L   R G   +   Y  E++ +            
Sbjct: 126 PEASAR---HADLIVEGEADDLWRRVLTDLRQG--TLGKTYRQEERPDLSLPRPVFKEHL 180

Query: 174 RGVTAF----LTIQEGCDKFCTFCVVPYTRG-IEISRSLSQVVDEARKLIDNGVCEITLL 228
                F    +    GC   C FC V    G     R + ++V E  +  ++       +
Sbjct: 181 DAGRYFTTNLIQTSRGCPHNCDFCNVHVLNGHRLRQRPIEEIVGEVARFREHDGRIFFFV 240

Query: 229 GQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT--TSHPRDMSDCLIKAHGDLDV 286
             ++NA        +     +L   L+ +    R+ +    +    M   L++       
Sbjct: 241 DDSINA--------DPDYAEELFRRLTTL----RITWFGQATTALGMQQSLLETFARSG- 287

Query: 287 LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR-PDIAISSDFIVGFPGETDD 345
               L + ++S      K+ ++  +  +  +++  +R++R   I++   FI G  G+T +
Sbjct: 288 -CSALLVGIESVEPASRKAHHKNQSRSD--ELVQSVRNIRSAGISLYGSFIYGLDGDTLE 344

Query: 346 DFRATMDLVDKIGYAQAFSFKYSPRLGT 373
              A +D +++            P  GT
Sbjct: 345 TPAAILDFINQTELDVPGINILRPTPGT 372


>gi|189501125|ref|YP_001960595.1| magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative
           cyclase [Chlorobium phaeobacteroides BS1]
 gi|189496566|gb|ACE05114.1| magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative
           cyclase [Chlorobium phaeobacteroides BS1]
          Length = 546

 Score = 84.2 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 57/364 (15%), Positives = 115/364 (31%), Gaps = 46/364 (12%)

Query: 43  RMEDMFFSQGYERVNSMDD-ADLIVLNTCH--IREKAAEKVYSF-----LGRIRNLKNSR 94
            +       GY ++  +D  AD +   T    IRE   + V +      + + +++    
Sbjct: 28  YIGGALKKAGYSQIRFIDAMADDLPDETLETIIRENKPDVVMATNITPSIFKAQDIMKIA 87

Query: 95  IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR---------- 144
            K    +  ++ G  +     ++L  +P  + V+  +       L++             
Sbjct: 88  KKVDPKIRTIMGGIHSTFMYPQVLSEAPETDYVIRGEGEEIAVNLIKAIDAGTDKQDREN 147

Query: 145 ---------FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT-------AFLTIQEGCDK 188
                     G+    T + V +  + L+     Y+  + +        A      GC  
Sbjct: 148 ITGIAYVNDEGEVHATTAHPVIEDLDDLTPDWSLYDWDKYIYTPLNCRLAVPNFARGCPF 207

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTF 247
            CTFC          +RS    VDE   L+    V    L  +     + K +       
Sbjct: 208 TCTFCSQWQFWRRYRARSPKHFVDEIEILVKKYNVGFFILADEEPTINKQKFV----SLC 263

Query: 248 SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307
            +L+    ++   +  R T          L+       ++  ++ L  ++ S   L    
Sbjct: 264 QELIDRKLDVTWGINTRVTDIMR---DADLLPFFRKAGLV--HVSLGTEAASQMNLNRFR 318

Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           +  T  E +  I  ++     I   + F++G   ET +    T  L        A    Y
Sbjct: 319 KETTIEENKLAIKLLQKN--GIVAEAQFVMGLEHETPETIEETYQLCKDWDPDMANWTIY 376

Query: 368 SPRL 371
           +P  
Sbjct: 377 TPWP 380


>gi|160880133|ref|YP_001559101.1| radical SAM domain-containing protein [Clostridium phytofermentans
           ISDg]
 gi|160428799|gb|ABX42362.1| Radical SAM domain protein [Clostridium phytofermentans ISDg]
          Length = 462

 Score = 84.2 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 39/199 (19%), Positives = 73/199 (36%), Gaps = 18/199 (9%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
           +    GC   C FC         I+R +  V+ + R L       I  +  N        
Sbjct: 164 VHTSRGCPYRCDFCYNSSASRQYINRPVQDVIKDIRAL---NSHHIMFIDDNFI------ 214

Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
             G       LL  L  +  L      +++  +M   L+    +       L +  +S +
Sbjct: 215 --GNPSWTHSLLKELKPMH-LKWNAAVSANILEM-LDLLDEMKESG--CQSLFIGFESIN 268

Query: 300 DRILKSMNRRHTA-YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
              L+ ++++  A  +Y  ++D I S    I I++ F+ G   +T + F++T+D +    
Sbjct: 269 PNSLRDVHKKQNAVNKYDNLVDAIHSR--GIMINASFVFGLDSDTSEIFQSTLDWIVSHK 326

Query: 359 YAQAFSFKYSPRLGTPGSN 377
                S   +P  GT    
Sbjct: 327 IETVTSHILTPYPGTALYE 345


>gi|315924927|ref|ZP_07921144.1| cobalamin B12-binding/radical SAM family protein [Pseudoramibacter
           alactolyticus ATCC 23263]
 gi|315621826|gb|EFV01790.1| cobalamin B12-binding/radical SAM family protein [Pseudoramibacter
           alactolyticus ATCC 23263]
          Length = 455

 Score = 84.2 bits (207), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 50/281 (17%), Positives = 97/281 (34%), Gaps = 17/281 (6%)

Query: 94  RIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTD 153
           +I       V++ G    A  EE L+ +  V V  G      + +++E  R  + V    
Sbjct: 88  QIHRRTRARVILGGMHPTALPEEALQHADQVIVGEG---EKVILDVVEGRRTERLVQGIP 144

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
               +  + +   D    R     A +    GC   CTFC           RS+  V+ E
Sbjct: 145 I---EDLDAVPFPDYSILRTPCEAANVISSRGCPFRCTFCTTSRMFAPYRRRSIDNVMAE 201

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
            R     G   +     N  A + +  +  +     +   L+  +     R   +   ++
Sbjct: 202 IRMYKRMGFRYMNFEDDNFTADKERAKEICR---RMIREGLTFRESFFFGRTDLAEDEEL 258

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
              L  AH      +  + + ++S + + L  +++  +    R+        R  + +S 
Sbjct: 259 LTLLHDAH------LTRVLIGIESLNQKALDRIHKGQSIENIRRAAAACARHRIRLIVS- 311

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
             ++G   +T  D +A +     I   Q      +P  GTP
Sbjct: 312 -LVLGLDEDTLADMQAGVQFAKDIRAYQLQPAILTPYPGTP 351


>gi|189425244|ref|YP_001952421.1| radical SAM protein [Geobacter lovleyi SZ]
 gi|189421503|gb|ACD95901.1| Radical SAM domain protein [Geobacter lovleyi SZ]
          Length = 473

 Score = 84.2 bits (207), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 48/306 (15%), Positives = 94/306 (30%), Gaps = 41/306 (13%)

Query: 104 VVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG----------------- 146
           V  G  A   G  +L R P ++ +V  +    + EL++                      
Sbjct: 102 VFGGAHACTMGAPLLDRFPAIDCLVMGEGEQTMLELVQAGFQNLANIPGVAYRDSNGQAA 161

Query: 147 -----KRVVDTDYSVEDKFERLSIVDGGYN-----RKRGVTAFLTIQEGCDKFCTFCVVP 196
                + + + D      +  L      Y            + +    GC   C++C   
Sbjct: 162 QSAPRELIANLDELPFPAYHLLPGFPQKYKLPLFSSPTAPNSSIISSRGCPYQCSYCDRS 221

Query: 197 YTRGIEISRSLSQVVDEARK-LIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
                    S   +++       D G+  +          R +        F +L   + 
Sbjct: 222 VFSRGFRFNSPEYILEHVAMLQRDYGIRHVFFYDDLFTFDRKR-----VAHFCELKARM- 275

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
              GL       +    +   L+            ++  ++SG   ILK   + +   E 
Sbjct: 276 ---GLQVTYNCIARLEHVDQELLSLLKGSG--CWQVNFGIESGDPEILKKHRKFYGLDEV 330

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
            + +  ++     + +   F+VG PGE +   R T+D    +   +    K++P  G P 
Sbjct: 331 GRKLQMVKDS--GMRVKGLFMVGLPGEDEAAIRRTIDYALSLPLDEINVTKFTPFPGAPV 388

Query: 376 SNMLEQ 381
              LEQ
Sbjct: 389 FKTLEQ 394


>gi|315609042|ref|ZP_07884012.1| coproporphyrinogen dehydrogenase [Prevotella buccae ATCC 33574]
 gi|315249246|gb|EFU29265.1| coproporphyrinogen dehydrogenase [Prevotella buccae ATCC 33574]
          Length = 372

 Score = 83.8 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 55/232 (23%), Positives = 90/232 (38%), Gaps = 20/232 (8%)

Query: 186 CDKFCTFC-VVPYTRGIEISRSLSQVVDEARKLIDN--GVCEITLLGQNVNAWRGKGLDG 242
           C+  C +C     TR     R    +  E         G  +   LG    +  G  L G
Sbjct: 11  CESRCIYCGFYSTTRTGLRRRYADALCREMEMRRGEMPGPPDTIYLGGGTPSTLGGELLG 70

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTT-SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
                  +   + ++ G      T   +P D++D    A   L   +  + +  Q+ SD 
Sbjct: 71  R------VFDYIYKVYGPCEGEITLECNPDDVTDDFCHALARLP--VNRVSMGAQTFSDA 122

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIA-ISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
            L+ ++RRH+A E    ++R+R    DI  IS D + GFPGET  D++  +D    +   
Sbjct: 123 RLRFLHRRHSAAEVVTAVERLRRA--DIRNISLDLMFGFPGETPADWQTDIDNALLLHPE 180

Query: 361 QAFSFKYSPRLGTPGSNML-----EQVDENVKAERLLCLQKKLREQQVSFND 407
              ++      GTP   ML     E++DE+V       L  +L        +
Sbjct: 181 HLSAYSLMYEEGTPLHRMLTRGEVEEIDEDVSLHMYDMLIDRLTTAGYEHYE 232


>gi|323694864|ref|ZP_08109017.1| Fe-S oxidoreductase [Clostridium symbiosum WAL-14673]
 gi|323501090|gb|EGB16999.1| Fe-S oxidoreductase [Clostridium symbiosum WAL-14673]
          Length = 486

 Score = 83.8 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 46/259 (17%), Positives = 87/259 (33%), Gaps = 22/259 (8%)

Query: 127 VVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGC 186
           V+G        + +E+        D   +     + L I D  +         +    GC
Sbjct: 166 VIGEIKETPDADYIEQLD------DIPMAAPFIKKYLDIRDYVFPAASFPAIQIFTGRGC 219

Query: 187 DKFCTFCVVPYT--RGIEISRSLSQVVDEARKLIDN--GVCEITLLGQNVNAWRGKGLDG 242
              C +CV P T        RS   VV+E   +  N   V E+ +      A        
Sbjct: 220 PAHCNYCVYPQTLHGHKYRLRSPENVVEEFEYIAKNFPEVHEVVIEDDTFTA-------- 271

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
            K     +   L E K   RL++  +   ++    ++A          +    +S +++I
Sbjct: 272 NKERVIKICELLEEKKLTKRLKWLCNARVNIDLKTMQAMKRAG--CHLIIPGFESYNEQI 329

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           LK++ +          ++  +     + I + ++VG  GET +    T+D   +      
Sbjct: 330 LKNIKKGSNLKLIDAYVENAKKA--GLMIHACYMVGNQGETQETMEHTLDAAMRFKTDTV 387

Query: 363 FSFKYSPRLGTPGSNMLEQ 381
             F   P  GT      ++
Sbjct: 388 QFFPLIPYPGTEAYQWAKE 406


>gi|67923197|ref|ZP_00516685.1| Radical SAM [Crocosphaera watsonii WH 8501]
 gi|67854983|gb|EAM50254.1| Radical SAM [Crocosphaera watsonii WH 8501]
          Length = 474

 Score = 83.8 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 60/357 (16%), Positives = 112/357 (31%), Gaps = 58/357 (16%)

Query: 53  YERVNS----MDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGC 108
           Y+ V        D +L+++ T         K    +            +  D  V + G 
Sbjct: 57  YQNVEDVLKIAKDYELVIMYTSTPTLPNDVKCAEAIKA----------QNPDTQVGLLGA 106

Query: 109 VAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE-------------RARFGKRVVDTDYS 155
            A     + L+  PI++ V   +  Y   EL E              A    +  +    
Sbjct: 107 HAAVLPTQTLKDHPIIDFVCRNEFDYTCKELAEGKPYEDIKGLTYRDALGNIKHTEEREL 166

Query: 156 VEDK---FERLSIVDGGYNRKRGVTAFLT-------IQEGCDKFCTFCVVPYTRGIEISR 205
           + D         + +   N +     +L           GC   CTFC+ P T G    R
Sbjct: 167 IHDWDSMPSVFPMYEQHLNFRNYFIGYLQHPYVSLYTGRGCPAQCTFCLWPQTIGGHQYR 226

Query: 206 --SLSQV---VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
             S   V   +  A+ +  N V E           + +            + ++SE    
Sbjct: 227 AKSPEAVGKEMALAKSIWGNEVREYFFDDDTFTIDKKR------------VMAISEHLKK 274

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
           + L ++ +   ++    +K   D    +  L +  +SG+  +L  + +       R+ ++
Sbjct: 275 LNLTWSCNARANLDYETLKTLRD--NGLRLLLVGFESGNQGVLDGVKKGIKLEVARRFMN 332

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
               +   I +   FI+G P E+ +    T+     I          SP  GT    
Sbjct: 333 NCNKL--GIKVHGAFILGLPNESKETIEDTIRFACDISPHTIQVSIASPYPGTELYK 387


>gi|119358086|ref|YP_912730.1| magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative
           cyclase [Chlorobium phaeobacteroides DSM 266]
 gi|119355435|gb|ABL66306.1| magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative
           cyclase [Chlorobium phaeobacteroides DSM 266]
          Length = 546

 Score = 83.8 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 57/372 (15%), Positives = 114/372 (30%), Gaps = 62/372 (16%)

Query: 43  RMEDMFFSQGYERVNSMDD-AD---------LI------VLNTCHIREKAAEKVYSFLGR 86
            +       G++++  +D  AD         +I      V+ T +I           + +
Sbjct: 28  YIGGALKQAGFDQIRFVDAMADDLPDDQIEEIIRSNKPDVVMTTNITPS--------IFK 79

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL------ 140
            +++     K    +  ++ G  +     ++L  +P  + V+  +       L+      
Sbjct: 80  AQDIMKIAKKVNPKIRTLMGGIHSTFMYPQVLSEAPETDYVIRGEGEEVAVNLIRSIANG 139

Query: 141 ----ERAR---------FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT-------AFL 180
               +RA           GK      + V +  + LS     Y+  + +        A  
Sbjct: 140 TDKQDRAEITGIAYVDDEGKVFATPAHPVIENLDTLSPDWSLYDWDKYIYTPLNCRLAVP 199

Query: 181 TIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKG 239
               GC   CTFC          +RS    VDE   L+    V    L  +     + K 
Sbjct: 200 NFARGCPFTCTFCSQWQFWRRYRARSPKHFVDEIEILVKKYNVGFFILADEEPTINKQKF 259

Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
           +       +     +    G+     T        + L+       ++  ++ L  ++ S
Sbjct: 260 V-------TLCQELIDRKLGVTWGINTRVTDIMRDEDLLPFFRKAGLV--HVSLGTEAAS 310

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
              L    +  T  E +  I  ++     I   + F++G   ET +    T  L      
Sbjct: 311 QMNLNRFRKETTIEENKFAIKMLQKN--GIVAEAQFVMGLEHETPETIEETYQLCKDWDP 368

Query: 360 AQAFSFKYSPRL 371
             A    Y+P  
Sbjct: 369 DMANWTIYTPWP 380


>gi|219666091|ref|YP_002456526.1| radical SAM protein [Desulfitobacterium hafniense DCB-2]
 gi|219536351|gb|ACL18090.1| Radical SAM domain protein [Desulfitobacterium hafniense DCB-2]
          Length = 445

 Score = 83.8 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 49/274 (17%), Positives = 90/274 (32%), Gaps = 22/274 (8%)

Query: 103 VVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFER 162
           VV  G    +  +E        + +           ++E A   +         + + E 
Sbjct: 87  VVAGGIHVTSSPDECRGYF---DAICIGAAERVWERMIEDAEESRLQQVYHDMTDFRGEE 143

Query: 163 LSIVDGGYNRKRGV--TAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN 220
           ++        K     T  +T   GC   C FC       + I R ++ V+ +   L   
Sbjct: 144 IASPAYHRIDKNRYLYTNIMTTSRGCPNRCGFCYNSCRNRMYIRRPVTDVLRDIEGL--- 200

Query: 221 GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKA 280
           G   I  +  N          G      +LL  L   +       TT         ++  
Sbjct: 201 GTRHILFIDDNFI--------GVPAYTRELLNHLRGRELKWSAAVTT--KIADYPDVLDL 250

Query: 281 HGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFP 340
             +       L +  +S ++  L  +N+ +   +Y +I+  I S    I I++  + G  
Sbjct: 251 MAETG--CQSLFIGFESINNSSLHGVNKDNQFEKYERIVTAIHSR--GIMINASMVFGLD 306

Query: 341 GETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
           G+  D F+ T+D + K       S   +P  GT 
Sbjct: 307 GDEPDVFQRTLDWLVKNKIETLTSHILTPYPGTE 340


>gi|257389067|ref|YP_003178840.1| radical SAM protein [Halomicrobium mukohataei DSM 12286]
 gi|257171374|gb|ACV49133.1| Radical SAM domain protein [Halomicrobium mukohataei DSM 12286]
          Length = 572

 Score = 83.8 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 73/460 (15%), Positives = 142/460 (30%), Gaps = 62/460 (13%)

Query: 57  NSMDDADLIV-LNTCHI------REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCV 109
             ++ ADL+V +    +         A       + ++          GG +   V    
Sbjct: 66  QDVEQADLLVYVGGMTVPGKYVGGTPAEP---DEVRKLAWTAGGTSMMGGPVRFGVGE-- 120

Query: 110 AQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG--KRVVDTDYSVEDKFERLSIVD 167
           A     E  R     + +          +L++    G   R            +   +V+
Sbjct: 121 ANEGASETARDDLDFDFLAMADVEAAAYDLVDNGLEGFEDRYRGVPEETRWARQGAFVVE 180

Query: 168 GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITL 227
              N    + A L    GC   C+FC  P   G    R    VVDE   L D GV    L
Sbjct: 181 QHPNHPDYLIAELETSRGCPYRCSFCTEP-MYGDPDFRPPESVVDEVDALSDRGVANFRL 239

Query: 228 LGQ-NVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR-------LRYTTSHPRDMSDCLIK 279
             Q ++ A+ G G         DL   +  +   +           T     + +   I+
Sbjct: 240 GRQADILAYGGDGKSPNPDALRDLYGGIRSVAPDLETLHLDNMNPITVVEWPEKAREGIR 299

Query: 280 AHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY---EYRQIIDRIRSVRPD-------- 328
              + +         ++S    + +  N   +A    +  +I++ +  VRP         
Sbjct: 300 VIAEHNTPGDTAAFGLESADPLVQEENNLNVSAEECFQAVRIVNEVAGVRPGEEPGSGPS 359

Query: 329 -----------IAISSDFIVGFPGETDDDFRATMDLVDKIGYA------QAFSFKYSPRL 371
                      +    + + G  GE  + F      + ++ Y       +    +     
Sbjct: 360 TGSDAPNRLPKLLPGINLVHGLKGERRESFEHNKRFLQRV-YDEGYMLRRINIRQVMAFE 418

Query: 372 GTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIE---VL--IEKHGKEKG 426
           GT   +M +     +  +     ++  +E + + ++  + ++     VL  +     + G
Sbjct: 419 GT---DMAD-TGAEIAKDHKQLFKQYKQEVRETIDNPMLKRVAPVGTVLPNVTLEYHQDG 474

Query: 427 KLVGR-SPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYG 465
           K  GR       +V       +G  I V ITD    ++ G
Sbjct: 475 KTFGRQLGTYPLLVGIPGERELGRTIDVAITDHGYRSVTG 514


>gi|126658124|ref|ZP_01729275.1| Putative methyltransferase [Cyanothece sp. CCY0110]
 gi|126620495|gb|EAZ91213.1| Putative methyltransferase [Cyanothece sp. CCY0110]
          Length = 478

 Score = 83.8 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 58/354 (16%), Positives = 115/354 (32%), Gaps = 58/354 (16%)

Query: 53  YERVNS----MDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGC 108
           Y+ V        D +L+++ T         K    +            +  D  V + G 
Sbjct: 57  YQTVEDVLKIAKDYELVIMYTSTPTLPNDVKCAEAIKA----------QNPDTQVGLLGA 106

Query: 109 VAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE------------RARFGKRVVDTDYSV 156
            A     + L  +P+++ V   +  Y   EL E            R +FG      +  +
Sbjct: 107 HAAVLPTQTLEENPVIDFVCRNEFDYTCKELAEGKPYEDIKGLSYRDKFGNIKHTEEREL 166

Query: 157 EDKFERLSIVDGGYNRKRGVTAFLT-----------IQEGCDKFCTFCVVPYTRGIEISR 205
              ++ +  V   Y +      +                GC   CTFC+ P T G    R
Sbjct: 167 IHDWDAMPSVFPMYEKHLNFRNYFIGYLLHPYVSLYTGRGCPAKCTFCLWPQTIGGHQYR 226

Query: 206 --SLSQV---VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
             +   V   +  A+ +  N V E           + + +            ++SE    
Sbjct: 227 AKTPEAVGKEMALAKSIWGNSVREYFFDDDTFTIDKKRVI------------AISEHLKK 274

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
           + L ++ +   ++    +K   D    +  L +  +SG+  +L  + +       R+ ++
Sbjct: 275 LNLTWSCNARANLDYDTLKTLRD--NGLRLLLVGFESGNQAVLDGVKKGIKLEVARKFMN 332

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
               +   I +   FI+G P E+ +    T+    ++          SP  GT 
Sbjct: 333 NCNKL--GIKVHGAFILGLPNESKETIEDTIRFACEVSPHTIQVSIASPYPGTE 384


>gi|156152095|gb|ABU54331.1| putative anaerobic Mg-protoporphyrin IX monomethylester cyclase
           [Desulfotignum phosphitoxidans]
          Length = 459

 Score = 83.8 bits (206), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 58/332 (17%), Positives = 117/332 (35%), Gaps = 46/332 (13%)

Query: 94  RIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR----- 148
             ++  D+ +++ G  A ++ EEI++  P V++VV  +    +  LL             
Sbjct: 88  YKRKHPDVKIIMGGVHASSQPEEIMKLCP-VDIVVRGEGEETIVSLLRAIEKNNDLNEVH 146

Query: 149 ------------------VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190
                             + + D      +  L  ++      R     L    GC   C
Sbjct: 147 GISYRKDKEIRHTPDRPLIKNLDEIPYPAYHLLEPIEKYQPLNRKYVFSLIASRGCPYKC 206

Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFSD 249
            FC        +  R+   ++ E + L DN  V  +      +   R   L+     F  
Sbjct: 207 IFCSANRLWKYQRRRNPKNILGEIKWLKDNYDVGFLRFEDDGLTNKRDWALE-----FFV 261

Query: 250 LLYSLSEIKGLVRLRYTTSHPRD-MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
            L  LS       + +        +   L+ A  D   +  Y    ++S S R+LK + +
Sbjct: 262 SLKELS-------IHFDCLTRIHKVDSELLLAMRDAGCIGVYH--GIESASPRLLKLLRK 312

Query: 309 RHTAYEYRQIIDR--IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY--AQAFS 364
               +   + I +     V   +  +   ++G P ET  + + T DLV ++    A+   
Sbjct: 313 GFPKWVNIEYIKKTIAEEVSLGLVPTVSAMIGIPTETKKEIQLTFDLVCELKRLGAKTQL 372

Query: 365 FKYSPRLGTPGSNMLEQVDENVKAERLLCLQK 396
           +  +P   T   ++ ++  E +  +R   L++
Sbjct: 373 WLMTPYPDTEAVSLYKE--ELIMIDRWKELKQ 402


>gi|197117419|ref|YP_002137846.1| cobalamin-binding radical SAM domain-containing iron-sulfur
           cluster-binding oxidoreductase [Geobacter bemidjiensis
           Bem]
 gi|197086779|gb|ACH38050.1| cobalamin-binding radical SAM domain iron-sulfur cluster-binding
           oxidoreductase [Geobacter bemidjiensis Bem]
          Length = 472

 Score = 83.8 bits (206), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 74/198 (37%), Gaps = 15/198 (7%)

Query: 179 FLTIQEGCDKFCTFCVVPYTRG-IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG 237
            +    GC   CTFC +    G      +  +V+ + ++L   G   + ++  N+     
Sbjct: 192 CVETSRGCTMTCTFCSITGMYGANFRCHAQERVIADLKELKRRGTQSVLIVDDNIT---- 247

Query: 238 KGLDGEKCTFSDLLYSLSE--IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPV 295
                +   F+ L  ++ E  + G+  L  T+         LI A  + +  M  + L +
Sbjct: 248 ----LDPPRFTRLARAIVEHGLNGMEYLVQTSVAGIVADPELIPALAEANFAM--VFLGI 301

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
           +S     L    +     +  Q + R+R     I +   FIVG PG+  ++ R       
Sbjct: 302 ESVLPETLAMFQKGDIREKTDQAVRRLRE--HGIGVMGGFIVGNPGDGREEIREVFRASR 359

Query: 356 KIGYAQAFSFKYSPRLGT 373
           ++     +    +P  GT
Sbjct: 360 RLHVDLPYVQCVTPYPGT 377


>gi|326790408|ref|YP_004308229.1| radical SAM protein [Clostridium lentocellum DSM 5427]
 gi|326541172|gb|ADZ83031.1| Radical SAM domain protein [Clostridium lentocellum DSM 5427]
          Length = 427

 Score = 83.8 bits (206), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 52/297 (17%), Positives = 113/297 (38%), Gaps = 23/297 (7%)

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           I+  ++++  +     +++ G       EE L     V  ++G       P        G
Sbjct: 76  IQAYEHAKAFKQRGAYILLGGYHVSNLPEEGLEHGDTV--IIGAGEIS-FPAFFYDFNRG 132

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTI-QEGCDKFCTFCVVPYTRGIEISR 205
           +     D+   D            +  + +     I   GC+  C FC +         R
Sbjct: 133 QPQKVYDHQKFDVCHIKVPARQQVSHAKYLGIPAIIADRGCNNSCKFCAISKMW-RSDPR 191

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            +  VVDE + L  N   ++     N    R   L        +L+ +L ++   +R   
Sbjct: 192 PIEAVVDELKALKTN---KVIFFDPNFFKPREYAL--------ELMKALEKLN--IRWAS 238

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT-AYEYRQIIDRIRS 324
             +      D L++A          + +  +S S++ LK + +R +   +Y++I++R+  
Sbjct: 239 NATADVAFDDELLEAARRSR--CTGVLIGFESLSEQSLKGVKKRFSNTEKYKEIVERMHH 296

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
              +IA++  F++GF  +T+++  +  + +  +          +P  G+P    LE+
Sbjct: 297 Y--NIAVNGCFVLGFDHDTEEELLSMPERIRYMHLDLTRFAILTPIPGSPLFKELEE 351


>gi|283833543|ref|ZP_06353284.1| BchE/P-methylase family protein [Citrobacter youngae ATCC 29220]
 gi|291071213|gb|EFE09322.1| BchE/P-methylase family protein [Citrobacter youngae ATCC 29220]
          Length = 462

 Score = 83.8 bits (206), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 59/334 (17%), Positives = 114/334 (34%), Gaps = 34/334 (10%)

Query: 55  RVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG 114
                +D D  ++    +    A + Y      R            + VV+ G       
Sbjct: 64  ICEIPEDLDADLIG-MTVITGTAARAYELAAGFRA---------KGITVVLGGPHVTLLP 113

Query: 115 EEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVD----TDYSVEDKFERLSIVDGGY 170
           +E  R     + +         PEL+     G          D+ ++D        +   
Sbjct: 114 QEAAR---HADSICVGYAEQSWPELITDFLNGNLQPQYLQGEDFHLDDPQLPFPQRERFD 170

Query: 171 NRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDN-GVCEITLL 228
           ++     +       C   C FCV P   G +     +  V+++ R+ +   G  ++  +
Sbjct: 171 SKHFLTQSVFEATRSCAHNCEFCVAPSAWGRKQFQHPVEWVINDIRQFVSRTGKRKLIFV 230

Query: 229 GQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLM 288
             N+ +  G      K  FS L+    +  GL  +    +H       L++         
Sbjct: 231 DLNLVSDIGY----AKALFSALIPLKIKWFGLSTVLIAHNH------ELMELMARSG--C 278

Query: 289 PYLHLPVQSGSDRILKSMNRRHTAY-EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDF 347
             L L +++ SD  LK   ++     +Y+ +I  +  +   I++   F+ G   +T D F
Sbjct: 279 KGLLLGLETVSDGSLKDAGKKFNGSVDYKMLIGDLHRL--GISVQGCFVFGLDHDTTDVF 336

Query: 348 RATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
             T++L  + G         +P  GTP    LE+
Sbjct: 337 DRTVELAIESGIDLPRFSVLTPFPGTPLYRRLEE 370


>gi|253701826|ref|YP_003023015.1| radical SAM protein [Geobacter sp. M21]
 gi|251776676|gb|ACT19257.1| Radical SAM domain protein [Geobacter sp. M21]
          Length = 472

 Score = 83.8 bits (206), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 48/265 (18%), Positives = 88/265 (33%), Gaps = 32/265 (12%)

Query: 129 GPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTA---------- 178
           G Q +  L + LE       V    +S E  F           R+  + A          
Sbjct: 125 GEQAFAALIDALEGELNLAAVPALSWSDEGTFRHNPTDQLLDLRRVPLPARDARVLDSFT 184

Query: 179 -------FLTIQEGCDKFCTFCVVPYTRG-IEISRSLSQVVDEARKLIDNGVCEITLLGQ 230
                   +    GC   CTFC +    G      +L +V+ +  +L   G   + ++  
Sbjct: 185 YFDRKLDCVETSRGCTMTCTFCSITGMYGTNFRCHALERVIADLEELKRRGTQSVLIVDD 244

Query: 231 NVNAWRGKGLDGEKCTFSDLLYSLSE--IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLM 288
           N+          +   F+ L  ++ E  +  +  L  T+         LI A  + +  M
Sbjct: 245 NIT--------LDPPRFTRLARAIVEHGLNSMEYLVQTSVAGIVADPELIPALAEANFAM 296

Query: 289 PYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFR 348
             + L ++S     L    +     +  Q + R+R     I +   FIVG P +  ++ R
Sbjct: 297 --VFLGIESVQPETLAMFQKGDIREKTDQAVRRLRE--HGIGVMGGFIVGNPDDGREEIR 352

Query: 349 ATMDLVDKIGYAQAFSFKYSPRLGT 373
                  ++     +    +P  GT
Sbjct: 353 EVFRASRRLRVDLPYVQCVTPYPGT 377


>gi|110802813|ref|YP_698932.1| radical SAM domain-containing protein [Clostridium perfringens
           SM101]
 gi|110683314|gb|ABG86684.1| radical SAM domain protein [Clostridium perfringens SM101]
          Length = 559

 Score = 83.5 bits (205), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 53/317 (16%), Positives = 111/317 (35%), Gaps = 34/317 (10%)

Query: 59  MDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEIL 118
            +  D++   +C+I          F+ R+  L         ++ ++  G     EG+E L
Sbjct: 53  EEKPDVVAF-SCYIWN------MEFVNRLAELIKL---VDPNIEILYGGPEVSYEGKEFL 102

Query: 119 RRSPIVNVVVGPQTYYRLPELLERARFGK-------------RVVDTDYSVEDKFERLSI 165
                  V+VG         +L +   GK             +V +     E     L  
Sbjct: 103 ENHEGEYVIVGEGEKTFREFVLYKLGEGKIEDIKGLNYKRDEKVFENPKRPEMDMNELVF 162

Query: 166 VDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEI 225
                        +     GC   C +C+     G      + +V  E +  ++ G+  +
Sbjct: 163 PYTYEEDINNKIVYYEASRGCPFKCKYCLSSVMHG-VRFLDVERVKKELKYFMERGLKLV 221

Query: 226 TLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLD 285
             + +  N  R   +        +LL  LSE     R  +  +    +++  I+   +  
Sbjct: 222 KFVDRTFNCNREYTV--------ELLKYLSEQDTETRFHFEVAADL-LTEEQIEILNNAP 272

Query: 286 VLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDD 345
                L + VQ+ ++ +L ++NR  T    ++ + ++ +   ++    D I G PGE  +
Sbjct: 273 KGRFQLEVGVQTTNNEVLHNINRYITYENIKEKVLKV-AAGKNVMQHLDLIAGLPGEDLE 331

Query: 346 DFRATMDLVDKIGYAQA 362
            F+ + + V  I   + 
Sbjct: 332 SFKKSFNDVHDIRPDEI 348


>gi|150017871|ref|YP_001310125.1| radical SAM domain-containing protein [Clostridium beijerinckii
           NCIMB 8052]
 gi|149904336|gb|ABR35169.1| Radical SAM domain protein [Clostridium beijerinckii NCIMB 8052]
          Length = 448

 Score = 83.5 bits (205), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 58/340 (17%), Positives = 127/340 (37%), Gaps = 51/340 (15%)

Query: 47  MFFSQGYERVNSMDDADLI-VLNTCHIREKAAEKVYSFLGRIRNLKNSRIKE-------- 97
           +  ++  ++++  ++ DL+ +  T  +  +A E    F  R   +    I          
Sbjct: 43  IIENENVDKIDFDENVDLVAITVTVDVMNRAVEISKEFQNRGVKVIAGGIHITADSEGAV 102

Query: 98  GGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVE 157
                +++   +A+   +++L+     ++        +          G  +V  DYS+ 
Sbjct: 103 NRFDAIIIG--MAERVWKKVLKDVENDSI--------KKIYYDMENINGNEIVSPDYSMI 152

Query: 158 DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR--GIEISRSLSQVVDEAR 215
           D            N+K   T  ++   GC   C FC    T      I+R +  V+ + +
Sbjct: 153 D------------NKKYLYTNIISTSRGCPFKCDFCYNSCTNSIKTYINRPIEDVIKDIK 200

Query: 216 KLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSD 275
            L       I  +  N          G      +LL  +  +K L      TS+  DM  
Sbjct: 201 VL---KTKHIMFIDDNFI--------GNPKWTKELLKEIKPLK-LKWNAAVTSNIVDMP- 247

Query: 276 CLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR-RHTAYEYRQIIDRIRSVRPDIAISSD 334
            L+    +       L +  +S + + ++S+++ +++   Y +++D I      I I++ 
Sbjct: 248 ELLDEMKESG--CQSLFIGFESINSKSIESVHKIQNSVSRYEKLVDEIHKR--GIMINAS 303

Query: 335 FIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
           F+ G   +  + F++T++ + K       S   +P  GT 
Sbjct: 304 FVFGLDEDDAEIFKSTLEWIVKNKIETVTSHIMTPYPGTK 343


>gi|55378610|ref|YP_136460.1| radical HhH [Haloarcula marismortui ATCC 43049]
 gi|55231335|gb|AAV46754.1| radical HhH [Haloarcula marismortui ATCC 43049]
          Length = 572

 Score = 83.5 bits (205), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 67/426 (15%), Positives = 133/426 (31%), Gaps = 52/426 (12%)

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +  +    N     GG +   V    A     E  R     + +        + +L+E  
Sbjct: 96  VRELAWTANGTSIMGGPVRFGVGE--ANEGASETARDDLDFDFLAMADVEAAVFDLVESG 153

Query: 144 RFG--KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
             G   R  D +           +V+   N    +   +    GC   C+FC  P   G 
Sbjct: 154 LEGFNDRYRDIEEETRWARAGAFVVEQHPNHPDYLICEMETSRGCPYRCSFCTEP-MYGN 212

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQ-NVNAWRGKGLDGEKCTFSDLLYSLSEI-KG 259
              R    VVDE   L D GV    L  Q ++ A+ G G          L   + ++   
Sbjct: 213 PDFRPPESVVDEVDALSDRGVKHFRLGRQADILAYGGDGEAPNPDALRRLYGGIRDVAPD 272

Query: 260 LVRLRYTTSHPR------DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
           L  L     +P       + +   I+   + +         ++S    ++   N   TA 
Sbjct: 273 LETLHLDNMNPITVVKWPEKAREGIRIIAEHNTPGDTAAFGLESADPNVMSDNNLNVTAD 332

Query: 314 EYRQII----------------------DRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351
           +  + +                      D      P +    + + G  GET + F    
Sbjct: 333 QCFEAVKIVNEVAGWRPGGDKDTAPNFGDDAARRLPKLLPGINLVHGLKGETRETFEHNK 392

Query: 352 DLVDKIGYA------QAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSF 405
             + ++ Y       +    +     GT   +M +     +  +     ++  +E + + 
Sbjct: 393 RFLQRV-YDEGLMLRRVNIRQVMAFEGT---DMAD-TGAEIAKDHKQLFKQYKQEVRETI 447

Query: 406 NDACVGQIIE---VL--IEKHGKEKGKLVGR-SPWLQSVVLNSKNHNIGDIIKVRITDVK 459
           ++  + ++     VL  +     + GK  GR       +V       +G ++ + +TD  
Sbjct: 448 DNPMLQRVAPPGTVLPDVHLEYHQDGKTFGRQLGTYPLLVGIPGERELGSVVDIAVTDHG 507

Query: 460 ISTLYG 465
             ++ G
Sbjct: 508 YRSVTG 513


>gi|307594929|ref|YP_003901246.1| Radical SAM domain-containing protein [Vulcanisaeta distributa DSM
           14429]
 gi|307550130|gb|ADN50195.1| Radical SAM domain protein [Vulcanisaeta distributa DSM 14429]
          Length = 543

 Score = 83.5 bits (205), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 61/308 (19%), Positives = 113/308 (36%), Gaps = 30/308 (9%)

Query: 79  KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRL 136
               F+ RIR       K    L VVV G  A       E++     V+ V   +    +
Sbjct: 134 SFRRFMMRIRPYIM-DAKSRNGLKVVVGGPSAWQWLYLPELMDFF-GVDTVFDGEGERLV 191

Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
            +L++R    + V    Y      +  SI +    +   V  F+ I  GC + C FC V 
Sbjct: 192 VDLVKRILNNEPV--PRYIYVGVNDVPSIDEIPTIKYPAVNGFVEIGRGCPRGCAFCSVT 249

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256
                     L ++ +E +  +  G+    +   +V  +   G++       D L  L +
Sbjct: 250 L--RPLRWYPLEKIEEELKLHVKYGIVHGLIHSDDVPLYGSTGVELNP----DKLIKLHQ 303

Query: 257 IKGLVRLRYTTSHP------------RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304
           +     L    SH               ++  + +   D         + +++GS R+ K
Sbjct: 304 LVKRYYLTMAWSHTTLASVLVAEKKYNRLATKIAEIIEDEHQDWWGAQVGLETGSRRLAK 363

Query: 305 SMN----RRHTAYEYRQIIDRIRSVRPDIA--ISSDFIVGFPGETDDDFRATMDLVDKIG 358
           ++           ++  +++    V  DI    +   IVG PGET+DD   T++L+D+I 
Sbjct: 364 AIMPGKAAPFKIEDWWDVVEEALGVMHDIKLIPALTVIVGLPGETEDDVMETIELLDRIR 423

Query: 359 YAQAFSFK 366
             ++    
Sbjct: 424 PYRSLVVP 431


>gi|91201062|emb|CAJ74120.1| conserved hypothetical protein [Candidatus Kuenenia
           stuttgartiensis]
          Length = 447

 Score = 83.5 bits (205), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 55/329 (16%), Positives = 108/329 (32%), Gaps = 34/329 (10%)

Query: 54  ERVNSMD---DADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVA 110
           E+V  +D   DADL+ +        A  + Y      R+           + V++ G   
Sbjct: 47  EKVEPLDLKLDADLVGITAMT---PAVNRAYEIADSFRS---------RGIRVIMGGMHV 94

Query: 111 QAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDG-- 168
               +E L+    V  ++G         L +  R   + +    +           +   
Sbjct: 95  SKMPDEALQHCDSV--IIGEAEQLWDKALDDCKRDELKSIYRHGNEYPSLANFPAPNWKL 152

Query: 169 GYNRKRGVTAFLTIQEGCDKFCTFCVVP-YTRGIEISRSLSQVVDEARKLIDNGVCEITL 227
              ++     FL    GC   C FC V     G   +R + +V  E + L       +  
Sbjct: 153 YEGKRYLPVHFLETTRGCPHNCEFCSVTNSFGGKFRNRPVDEVEKEIQNLKPFEGMFVLK 212

Query: 228 LGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM--SDCLIKAHGDLD 285
            G          +D    +       L +      L++T     ++  +D ++       
Sbjct: 213 NGV-------FFVDDNIISNRVHAKELLKRIIPYNLKWTGQASVNIAKNDEILDLCKKSG 265

Query: 286 VLMPYLHLPVQSGSDRILKSMNRR-HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETD 344
                L +  +S S   L +M +  +T   Y  ++ ++      I ++  F+ GF  + +
Sbjct: 266 --CMGLIVGFESLSQGNLANMGKTFNTPDTYIDVVKKLHDY--GIGVTGAFVFGFDHDDE 321

Query: 345 DDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
             F  T++ V K      +    +P  GT
Sbjct: 322 SVFDRTIEFVIKAKIDVCYFSILTPYPGT 350


>gi|253582315|ref|ZP_04859538.1| radical SAM domain-containing protein [Fusobacterium varium ATCC
           27725]
 gi|251835854|gb|EES64392.1| radical SAM domain-containing protein [Fusobacterium varium ATCC
           27725]
          Length = 554

 Score = 83.5 bits (205), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 43/306 (14%), Positives = 106/306 (34%), Gaps = 30/306 (9%)

Query: 92  NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVD 151
               K   ++ V++ G     + ++I+  +P ++ ++  +        L       +V+ 
Sbjct: 78  KEIKKVLPNVEVILGGPEVSFDWKKIMEENPEIDNILVGEGEKVFLNFL--INENDKVMG 135

Query: 152 TDYSV---------EDKFERLSIVDGGYN----RKRGVTAFLTIQEGCDKFCTFCVVPYT 198
             Y           E   E L I+   Y      ++    +     GC   C++C +   
Sbjct: 136 LVYRKNGEVYFNGQEKIIEDLDIIPFPYENEELEEKTKIFYYESSRGCPFNCSYC-MSSI 194

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258
                  S+ +V ++ +  +D+ +  +  + +  N  + + ++  K    +    +    
Sbjct: 195 DKTVRYYSIERVKEDLKIFLDSSIRLLKFVDRTFNLKKERYMEIWKFLLENYREGI---- 250

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
                 +   +     D  +     +        + VQS +   +KS+NR        ++
Sbjct: 251 ----TFHFEINANIFDDETLDFLETVPKGYFQFEIGVQSINSDTMKSINRN---NVLDKL 303

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
              +R +  +I +  D I G P ET + F+ + + V  +              GT    M
Sbjct: 304 AHNVRRINKNIHLHLDLIAGLPYETYEIFKKSFEYVHDLKPEMIQLGFLKLLKGT---QM 360

Query: 379 LEQVDE 384
             ++++
Sbjct: 361 YNEIEK 366


>gi|158522444|ref|YP_001530314.1| radical SAM domain-containing protein [Desulfococcus oleovorans
           Hxd3]
 gi|158511270|gb|ABW68237.1| Radical SAM domain protein [Desulfococcus oleovorans Hxd3]
          Length = 502

 Score = 83.5 bits (205), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 59/318 (18%), Positives = 102/318 (32%), Gaps = 46/318 (14%)

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
            +     KE    ++VV G    +   E+    P ++ VV  +    L  ++E    G R
Sbjct: 105 EIARRVKKEIDPEMIVVTGGTHPSFLPEMTLEHPYIDYVVLGEGELGLERIIEAHNSGGR 164

Query: 149 VVDTD-------------------------------YSVEDKFERLSIVDGGYNRKRGVT 177
           + D D                                   + +   ++  G + RK+  T
Sbjct: 165 IEDIDGIAFRTKSGVQVNPRTTWIEDLDVLPLPARDLLPMENYFAATVPMGLHWRKKRNT 224

Query: 178 AFLTIQEGCDKFCTFCVVPYTRG-IEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAW 235
             ++   GC   C FC      G     RS   V+ E   L     + E+     N+ A 
Sbjct: 225 PIVS-SRGCPFGCPFCSSHLHWGKRFRKRSAENVLAEIEHLKSRYNIQELKWQDDNLTA- 282

Query: 236 RGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPV 295
                +  K  FS ++     +               + + ++            L L +
Sbjct: 283 ---DRNRAKAIFSGMIDRGLTMP---WNTPNGIALWTLDEEMLALMKKSG--CYELTLAI 334

Query: 296 QSGSDRIL-KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           +SG      + + +  T  + R +    R     IA  + FI+GFPGET      +M   
Sbjct: 335 ESGDPLSFARYVRKPFTLDKARHVAALARRT--GIATVAYFIIGFPGETLAQIENSMRYA 392

Query: 355 DKIGYAQAFSFKYSPRLG 372
             +G      F Y+P  G
Sbjct: 393 LLLGADYLVPFIYNPLPG 410


>gi|297526915|ref|YP_003668939.1| Radical SAM domain protein [Staphylothermus hellenicus DSM 12710]
 gi|297255831|gb|ADI32040.1| Radical SAM domain protein [Staphylothermus hellenicus DSM 12710]
          Length = 507

 Score = 83.5 bits (205), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 53/301 (17%), Positives = 112/301 (37%), Gaps = 24/301 (7%)

Query: 80  VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPI-VNVVVGPQTYYRLPE 138
                 R  N    R      + ++  G  A     E+       V+ V+  +    + +
Sbjct: 122 NRLSFKRFMNSPVIRKAREKGVKIIAGGPAAWQWLWELELWRKWGVDTVIDGEVERVIVD 181

Query: 139 LLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
           ++++A   + +   DY      +  SI +    +   V   + I  GC + C FC V   
Sbjct: 182 IVDKALNNEPL--PDYIYVGPRDAPSIEEIPNIKAPSVNGLIEIMRGCPRGCKFCSVTL- 238

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258
                   L ++ +E R  +  G   + L  ++V  +   G+        +L  ++ E  
Sbjct: 239 -RPLRFIPLEKIREEIRINLRGGTKGVILHSEDVLLYGADGVKPRPEPLINLHKTVFEEL 297

Query: 259 GLVRLRYTTSHPR-------DMSDCLIKAHGDLDVLMPY-----LHLPVQSGSDRILKSM 306
           G  +  +  SH         +    LI    +  VL  +     + + +++GS R+ K +
Sbjct: 298 GEKK-EFAWSHASLAAIKYAEDEYGLISKLMNEYVLSDHRRFLGVEVGIETGSPRLAKII 356

Query: 307 N----RRHTAYEYRQIIDRIRSVRPD--IAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
                  + A ++  I++    +  +  I  ++  I+G P E  DD   T +L+D++   
Sbjct: 357 MPAKAAPYPAEKWPDIVEDAFRIMHENKIIPAATIILGLPEEKPDDLVKTAELMDRLKPY 416

Query: 361 Q 361
           +
Sbjct: 417 R 417


>gi|312114855|ref|YP_004012451.1| radical SAM protein [Rhodomicrobium vannielii ATCC 17100]
 gi|311219984|gb|ADP71352.1| Radical SAM domain protein [Rhodomicrobium vannielii ATCC 17100]
          Length = 594

 Score = 83.5 bits (205), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 47/302 (15%), Positives = 101/302 (33%), Gaps = 26/302 (8%)

Query: 86  RIRNLKNSRIKEGGDLLVV---VAGCVAQAE---GEEILRRSPIVNVVVGPQTYYRLPEL 139
           R  +L  +  K G  + +    V+GCVA       +    +   +++  G     R   +
Sbjct: 101 RAVDLAMTFRKAGLPVAIGGFHVSGCVAMLPDLPSDIRAAQQQGISLFAGEAEDGRFDIV 160

Query: 140 LERARFGKRVVD----TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
           L  A  G         +D           +      R  GVT+   +  GC   C+FC +
Sbjct: 161 LRDAYQGTLQPLYNFMSDLPDMTHQPHPMLPREHVRRTLGVTSSFDLGRGCPYQCSFCTI 220

Query: 196 PYTRGI-EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL 254
              +G     RS   +    R+    G+    +   N    R          +  L   +
Sbjct: 221 INVQGRKSRFRSPDDLEAIIRQNHAQGIHRFFITDDNFARNR---------NWEALFDRV 271

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIK--AHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
             ++   R++   +   D     I           +  + + +++ +   L    +R   
Sbjct: 272 IALRERERIKVKFTIQVDTLCHQIPGFVEKASKAGVSRVFIGLENINPDSLLGAKKRQNK 331

Query: 313 -YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD-KIGYAQAFSFKYSPR 370
             +YR ++   +     +   + +I+GFP +T +     ++++  ++       F  +P 
Sbjct: 332 ITDYRAMLQAWKKR--GVVTYAGYIIGFPNDTPETVARDIEIIKRELPVDVLEFFMLTPL 389

Query: 371 LG 372
            G
Sbjct: 390 PG 391


>gi|302822673|ref|XP_002992993.1| hypothetical protein SELMODRAFT_8469 [Selaginella moellendorffii]
 gi|300139193|gb|EFJ05939.1| hypothetical protein SELMODRAFT_8469 [Selaginella moellendorffii]
          Length = 82

 Score = 83.1 bits (204), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 1/78 (1%)

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +  + P+I I++D I GFPGET +DF   M+L+ +  + Q    ++ PR GTP + M ++
Sbjct: 1   LEKLVPEIHIATDIICGFPGETSEDFDRIMELIREYTFPQVHISQFYPRPGTPAALM-KR 59

Query: 382 VDENVKAERLLCLQKKLR 399
           V      +R  CL    +
Sbjct: 60  VPTLEVKKRSRCLTSLFK 77


>gi|307596249|ref|YP_003902566.1| Radical SAM domain-containing protein [Vulcanisaeta distributa DSM
           14429]
 gi|307551450|gb|ADN51515.1| Radical SAM domain protein [Vulcanisaeta distributa DSM 14429]
          Length = 565

 Score = 83.1 bits (204), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 53/293 (18%), Positives = 110/293 (37%), Gaps = 22/293 (7%)

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
             +  +    L +VV G       +   +    ++VV   +     P+L ++   G+ V 
Sbjct: 157 HPAIKRHRSHLKIVVGGPAGWQIVDTGRQDELGIDVVYEGEFEEDGPQLFDKIMKGEPVP 216

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS-Q 209
               +       + I          +   + +  GC + C FC  P   G+  S      
Sbjct: 217 SRVVAHRP----VPIDMVPTIVTPSIGGMVEVTRGCGRGCQFC-TPTLSGMIRSFPFEGH 271

Query: 210 VVDEARKLID-NGVCEITLLGQNVNAWRGKGLDGEKCTFSDL---LYSLSEIKGLVRLR- 264
           +  E +  I+  G  EITL       +  KG++       DL    Y L +  G      
Sbjct: 272 IDREIKLNIEVGGFKEITLHSDEFFRYGAKGIEPNPDKVLDLTIKAYKLVKSYGDDYEIT 331

Query: 265 --YTTSHPRDMSDCLIKAHGDLDV---LMPYLHLPVQSGSDRILKSMNR----RHTAYEY 315
             +TT+     +  ++K   +         ++ + +++GS R+L+ +       +   +Y
Sbjct: 332 TDFTTAAVVKYAPKMVKEVSEYMNEGGTWHFIEMGIETGSPRLLRLLMAGKALPYKPEQY 391

Query: 316 RQIIDRIRSVRPD--IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
             +++    +  D    +    I+  PGETDDD   +++L+D++   +  +F 
Sbjct: 392 PDVVEEAIGILNDNYWVVVGTMILNLPGETDDDVIKSLELLDRLKRLRVLTFP 444


>gi|95929525|ref|ZP_01312267.1| Radical SAM [Desulfuromonas acetoxidans DSM 684]
 gi|95134222|gb|EAT15879.1| Radical SAM [Desulfuromonas acetoxidans DSM 684]
          Length = 485

 Score = 83.1 bits (204), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 50/307 (16%), Positives = 91/307 (29%), Gaps = 41/307 (13%)

Query: 99  GDLLVVVAGCVAQAEGEEILRRSPIVN-VVVG-------------PQTYYRLPELLERAR 144
             L V   G    A  E +L   P ++ +VVG                +  L  ++ R  
Sbjct: 104 PGLKVAAGGAHVSALKETLLSDYPQLDALVVGEGEETLYQLASATNDDHTALSGVVCRTD 163

Query: 145 FGKRVVD-----------TDYSVEDKFERLSIVD--GGYNRKRGVTAFLTIQEGCDKFCT 191
            G+ V +             +   DK E          +N  +          GC   C+
Sbjct: 164 DGEVVFNGYREPALDLDALPFPAYDKLEGFPEAYQLPIFNYPKAPNTSCISSRGCPYACS 223

Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFSDL 250
           +C     R      S   +    + L +   +  I          R + +D         
Sbjct: 224 YCDRSVFRRTFRYNSADYLYRHLQHLRERYDIRHINFYDDQFTFHRQRVIDF-------C 276

Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
              + +   L            + D LI            + L +++G   +L    +  
Sbjct: 277 QRMIDQ--PLGMTFNCAIRAEHVDDELIALMKRAG--CWMMSLGIETGDPELLAQHRQNP 332

Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370
                   I  I+     I +    +VG PGE++   R ++D + K+        K++P 
Sbjct: 333 DLDMLANTIRLIKK--HGIRVKGLMMVGLPGESEQSVRRSIDYILKLPIDDLNVAKFTPF 390

Query: 371 LGTPGSN 377
            G+P   
Sbjct: 391 PGSPLYE 397


>gi|110799375|ref|YP_696330.1| radical SAM domain-containing protein [Clostridium perfringens ATCC
           13124]
 gi|170763908|ref|ZP_02900164.1| radical SAM domain protein [Clostridium perfringens B str. ATCC
           3626]
 gi|110674022|gb|ABG83009.1| radical SAM domain protein [Clostridium perfringens ATCC 13124]
 gi|170712454|gb|EDT24636.1| radical SAM domain protein [Clostridium perfringens B str. ATCC
           3626]
          Length = 559

 Score = 83.1 bits (204), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 53/317 (16%), Positives = 111/317 (35%), Gaps = 34/317 (10%)

Query: 59  MDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEIL 118
            +  D++   +C+I          F+ R+  L         ++ ++  G     EG+E L
Sbjct: 53  EEKPDVVAF-SCYIWN------MEFVNRLAELIKL---VDPNIEILYGGPEVSYEGKEFL 102

Query: 119 RRSPIVNVVVGPQTYYRLPELLERARFGK-------------RVVDTDYSVEDKFERLSI 165
                  V+VG         +L +   GK             +V +     E     L  
Sbjct: 103 ENHEGEYVIVGEGEKTFREFVLYKLGEGKIEDIKGLNYKRDGKVFENPKRPEMDMNELVF 162

Query: 166 VDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEI 225
                        +     GC   C +C+     G      + +V  E +  ++ G+  +
Sbjct: 163 PYTYEEDINNKIVYYEASRGCPFKCKYCLSSVMHG-VRFLDVERVKKELKYFMERGLKLV 221

Query: 226 TLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLD 285
             + +  N  R   +        +LL  LSE     R  +  +    +++  I+   +  
Sbjct: 222 KFVDRTFNCNREYTV--------ELLKYLSEQDTETRFHFEVAADL-LTEEQIEILNNAP 272

Query: 286 VLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDD 345
                L + VQ+ ++ +L ++NR  T    ++ + ++ +   ++    D I G PGE  +
Sbjct: 273 KGRFQLEVGVQTTNNEVLHNINRYITYENIKEKVLKV-AAGKNVMQHLDLIAGLPGEDLE 331

Query: 346 DFRATMDLVDKIGYAQA 362
            F+ + + V  I   + 
Sbjct: 332 SFKKSFNDVHAIRPDEI 348


>gi|78188212|ref|YP_378550.1| magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative
           cyclase [Chlorobium chlorochromatii CaD3]
 gi|78170411|gb|ABB27507.1| Magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative
           cyclase [Chlorobium chlorochromatii CaD3]
          Length = 547

 Score = 83.1 bits (204), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 54/371 (14%), Positives = 111/371 (29%), Gaps = 60/371 (16%)

Query: 43  RMEDMFFSQGYERVNSMDD-ADLIVLNTCHIREKAAEKVYS--------------FLGRI 87
            +       G+ +V  +D  AD +        + A E++                 + + 
Sbjct: 28  YIGGALKQAGFTQVRFVDAMADDLP-------DDAIEEIIRKNQPDVVMATNITPSIFKA 80

Query: 88  RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG- 146
           +++     K    +  ++ G  +     ++L  +P  + V+  +       L++    G 
Sbjct: 81  QDIMKIAKKVSPKIRTIMGGIHSTFMYPQVLTEAPETDYVIRGEGEEVAVNLIKAIAAGN 140

Query: 147 ------------------KRVVDTDYSVEDKFERLSIVDGGYNRKRGVT-------AFLT 181
                             K      + V +  + L+     Y+  + +        A   
Sbjct: 141 DKEARADITGIAYIDDDGKVFATAAHPVIEDLDTLTPDWSLYDWDKYIYTPLNCRLAVPN 200

Query: 182 IQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGL 240
              GC   CTFC          +RS    VDE   L+    V    L  +     + K +
Sbjct: 201 FARGCPFTCTFCSQWQFWRRYRARSPKHFVDEIEILVKKYNVGFFILADEEPTINKQKFV 260

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300
                   +L+     +   +  R T          L+       ++  ++ L  ++ S 
Sbjct: 261 ----ALCQELIDRKLNVTWGINTRVTDIMR---DADLLPFFRKAGLV--HVSLGTEAASQ 311

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
             L    +  T  E +  I  ++     I   + F++G   ET +    T  L       
Sbjct: 312 MNLNRFRKETTIEENKFAIKLLQKN--GIVAEAQFVMGLEHETPETIEETYQLCKDWDPD 369

Query: 361 QAFSFKYSPRL 371
            A    Y+P  
Sbjct: 370 MANWTIYTPWP 380


>gi|303247714|ref|ZP_07333984.1| Radical SAM domain protein [Desulfovibrio fructosovorans JJ]
 gi|302490986|gb|EFL50883.1| Radical SAM domain protein [Desulfovibrio fructosovorans JJ]
          Length = 494

 Score = 83.1 bits (204), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 58/309 (18%), Positives = 101/309 (32%), Gaps = 41/309 (13%)

Query: 90  LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149
           L     +      +V  G       +E + + P V+ +V  +     P  L+    G+  
Sbjct: 92  LTRRLRELAPRAKIVWGGPHTSLFPDESMAQ-PEVDFLVTGEAEESFPAFLDALEEGRSF 150

Query: 150 VDTDYSVEDKF-------------ERLSIVDGGYNRKRGVTAFLTI-----------QEG 185
            D       +              +  SI    Y+       F  I             G
Sbjct: 151 EDIPGIYWREAGAVRRSGDPGYVKDIESIPFPAYDLLPYKRYFSAIGTGLPVGTICSSRG 210

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C   CTFC  PY+     SRS+  ++DE     + G+ E        NA   +     + 
Sbjct: 211 CPFHCTFCCKPYST--YRSRSVDNILDEMAVYYERGIREFFFFDDLFNASAKRVAAISQG 268

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
                   +   +G V           +++ +++               V+  +D  LK 
Sbjct: 269 ILDRGFRVVWAFRGRV---------DAVTEDMLRLAKKSG--CRQALFGVEDATDEGLKR 317

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFP-GETDDDFRATMDLVDKIGYAQAFS 364
           +N++ T  + R+ I   R V   I  S+++I+GFP  +T +D    +D    I    A  
Sbjct: 318 INKKITVEQVRRAIKLCRKV--GILTSTNWIIGFPHHKTQEDILHLIDTAVSIDSDFAQF 375

Query: 365 FKYSPRLGT 373
                  GT
Sbjct: 376 NIMIAYYGT 384


>gi|258593728|emb|CBE70069.1| protein of unknown function [NC10 bacterium 'Dutch sediment']
          Length = 779

 Score = 83.1 bits (204), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 44/271 (16%), Positives = 88/271 (32%), Gaps = 21/271 (7%)

Query: 113 EGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDK------FERLSIV 166
           +G +I        VVV  +       +L     G+      ++   K         L I+
Sbjct: 164 QGSDIQELYRESIVVVSGEVEGHWEGILADLLNGQLKPLYSFAQNLKDLVNIDNAPLPII 223

Query: 167 DG--GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI-EISRSLSQVVDEARKLIDNGVC 223
                 +  R     +    GC   C+FC +   +G     RS   + +  R+       
Sbjct: 224 SRKTMKHFARPNFGTVETSRGCPFSCSFCTIINVQGRMMRERSPEVIAELVRRNYTEHQI 283

Query: 224 EITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGD 283
           +      +  A +       + TF  ++      +G+                 ++   +
Sbjct: 284 DFYFFTDDNFARKKWW----RETFEAIIRL--REEGIKISFMMQVDLARKPQDFVRLAAE 337

Query: 284 LDVLMPYLHLPVQSGSDRILKSMNRR-HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGE 342
                  + + ++S +   +K+  +  +   EYR II         +A+   +I+G P +
Sbjct: 338 AG--CTQVFVGMESVNPDNIKAQGKGQNKVEEYRAIIGEWHDA--GVAVHVAYIIGMPFD 393

Query: 343 TDDDFR-ATMDLVDKIGYAQAFSFKYSPRLG 372
           T          L+D+I   QA  F  +P  G
Sbjct: 394 TKAQVALDMQYLIDEIQPDQASFFMLTPLPG 424


>gi|78189497|ref|YP_379835.1| Elongator protein 3/MiaB/NifB [Chlorobium chlorochromatii CaD3]
 gi|78171696|gb|ABB28792.1| Elongator protein 3/MiaB/NifB [Chlorobium chlorochromatii CaD3]
          Length = 462

 Score = 83.1 bits (204), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 71/193 (36%), Gaps = 15/193 (7%)

Query: 185 GCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVCEITLLGQNVN-AWRGKGLDG 242
           GC   C FC  P   G     R +  V+DE +   D          QN+  ++    +  
Sbjct: 199 GCPVGCNFCTTPTIYGKSYRYREIDIVIDEMKYHQDRVGK------QNITFSFMDDNISF 252

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
            +  F +LL  +S++        + +     +  + +           + +  +S +   
Sbjct: 253 RQNYFMELLNEMSQLGVNWNANISMNFL--YNPEVAELAARSG--CDLMSIGFESLNPDT 308

Query: 303 LKSMNRRHTA-YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
           LKSMN+       Y  ++  +      IAI + F+ GF  +T+  F A  + + +     
Sbjct: 309 LKSMNKGSNRLQNYSTVVSNLHK--HGIAIQAYFMFGFDDDTEKSFDAVYEFIMENRIEF 366

Query: 362 AFSFKYSPRLGTP 374
                 +P  GTP
Sbjct: 367 PVFSLVTPFPGTP 379


>gi|182626114|ref|ZP_02953875.1| radical SAM domain protein [Clostridium perfringens D str. JGS1721]
 gi|177908635|gb|EDT71156.1| radical SAM domain protein [Clostridium perfringens D str. JGS1721]
          Length = 559

 Score = 83.1 bits (204), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 53/317 (16%), Positives = 111/317 (35%), Gaps = 34/317 (10%)

Query: 59  MDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEIL 118
            +  D++   +C+I          F+ R+  L         ++ ++  G     EG+E L
Sbjct: 53  EEKPDVVAF-SCYIWN------MEFVNRLAELIKL---VDPNIEILYGGPEVSYEGKEFL 102

Query: 119 RRSPIVNVVVGPQTYYRLPELLERARFGK-------------RVVDTDYSVEDKFERLSI 165
                  V+VG         +L +   GK             +V +     E     L  
Sbjct: 103 ENHEGEYVIVGEGEKTFREFVLYKLGEGKIEDIKGLNYKRDGKVFENPKRPEMDMNELVF 162

Query: 166 VDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEI 225
                        +     GC   C +C+     G      + +V  E +  ++ G+  +
Sbjct: 163 PYTYEEDINNKIVYYEASRGCPFKCKYCLSSVMHG-VRFLDVERVKKELKYFMERGLKLV 221

Query: 226 TLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLD 285
             + +  N  R   +        +LL  LSE     R  +  +    +++  I+   +  
Sbjct: 222 KFVDRTFNCNREYTV--------ELLKYLSEQDTETRFHFEVAADL-LTEEQIEILNNAP 272

Query: 286 VLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDD 345
                L + VQ+ ++ +L ++NR  T    ++ + ++ +   ++    D I G PGE  +
Sbjct: 273 KGRFQLEVGVQTTNNEVLHNINRYITYENIKEKVLKV-AAGKNVMQHLDLIAGLPGEDLE 331

Query: 346 DFRATMDLVDKIGYAQA 362
            F+ + + V  I   + 
Sbjct: 332 SFKKSFNDVHAIRPDEI 348


>gi|317153740|ref|YP_004121788.1| cobalamin B12-binding domain-containing protein [Desulfovibrio
           aespoeensis Aspo-2]
 gi|316943991|gb|ADU63042.1| cobalamin B12-binding domain protein [Desulfovibrio aespoeensis
           Aspo-2]
          Length = 504

 Score = 83.1 bits (204), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 55/327 (16%), Positives = 109/327 (33%), Gaps = 42/327 (12%)

Query: 58  SMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEI 117
            +  AD+++++   ++  +A ++         L             VVAG  A   G E 
Sbjct: 62  DLAWADMVMVSAMLVQAPSARQIIGRAREAGKL-------------VVAGGPAFGTGRET 108

Query: 118 LRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGY----NRK 173
               P V+  +  +    +   +E  + G   V  +    +++  L+          N K
Sbjct: 109 F---PGVDHFIVGEAEEIMAAFVEDLQSG---VAREMYQSERWPDLATTPLPLWELLNFK 162

Query: 174 RGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR--SLSQVVDEARKLIDNGVCEITLLGQN 231
             V+  +    GC   C FC +    G   SR  S  Q++ E + L D G  +   +  +
Sbjct: 163 DYVSMSVQYSRGCPFDCEFCGIMALNGR-RSRVKSPDQMLREMQSLYDAGWRDTVFIVDD 221

Query: 232 VNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM----SDCLIKAHGDLDVL 287
                     G       LL  L++ +      Y       +       L+    + +  
Sbjct: 222 -------NFIGNVAHVKRLLPRLADWQRERGYPYMLMTEASINLAADPELMTMMSEAN-- 272

Query: 288 MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV-RPDIAISSDFIVGFPGETDDD 346
              + + +++ S   L    ++            +R + R  + +   FIVGF  +T   
Sbjct: 273 FHKVFIGIETPSVDSLIECGKKQNVAM--DFASAVREIHRHGMQVMGGFIVGFDHDTKSI 330

Query: 347 FRATMDLVDKIGYAQAFSFKYSPRLGT 373
           F   +  + +IG   A     +    T
Sbjct: 331 FEQQIRFIQEIGVVTAMVGVLNAMPQT 357


>gi|242398589|ref|YP_002994013.1| Putative oxidative cyclase [Thermococcus sibiricus MM 739]
 gi|242264982|gb|ACS89664.1| Putative oxidative cyclase [Thermococcus sibiricus MM 739]
          Length = 587

 Score = 83.1 bits (204), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 78/457 (17%), Positives = 140/457 (30%), Gaps = 54/457 (11%)

Query: 59  MDDADLIV----LNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG 114
           ++ AD+IV    L+T      A       + +           GG   +  A        
Sbjct: 82  LEKADVIVYIGGLHTPGKYLSAVPSQVEEVAKFIKPFRGVKILGGPAFMGSAHEGGTRIS 141

Query: 115 -EEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERL--SIVDGGYN 171
             E++    + + +V       L + L   +         YS    +  L   +V    +
Sbjct: 142 SRELMLAQNVFDHIVYGDLEAFLYDFLTNPKDANPFRFRSYSELRDYALLGAEVVKQFPD 201

Query: 172 RKRGVTAFLTIQEGCDK-----FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEIT 226
               V   +  Q GC K      C+FC  P        R +  +V E   L + GV    
Sbjct: 202 YPEFVIVEIESQRGCPKAAGIGGCSFCTEPVRYKTIEDRPIEDIVKEVEILYNLGVKHFR 261

Query: 227 LLGQNVNAWRGKGLD-----GEKCTFSDLLYSLSEI-KGLVRLRYTTSHPRDMSDCLIKA 280
           +  Q+         D             L   +  +   +  L    ++P  +++   ++
Sbjct: 262 IGRQSCIFSYMAKPDSRVPIPNPEAIEKLFKGIRAVAPKIKTLHVDNANPAIIANYPKES 321

Query: 281 HGDLDVLMPYLH------LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV--------R 326
                 L+ Y          +++   ++ +  N   T  E  + +  +  V         
Sbjct: 322 IRIAKALIEYGTPGNVVAFGLETADPKVARLNNLNSTPEETYEAVKILNKVGAKRGYNGM 381

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA------QAFSFKYSPRLGTPGSNMLE 380
           P +    + + G PGET   +  T + + KI         +    +     GTP  NM  
Sbjct: 382 PLLLPGINILFGLPGETKKTYELTYEFLKKI-LDDGLLIRRINIRQVVVFPGTPLWNMR- 439

Query: 381 QVDENVKAERLLCLQ-----KKLREQQVSFNDAC--VGQII-EVLIEKHGKEKGKLVGR- 431
              E +K E+   L      K   E           VG I+ EV  E    + G   GR 
Sbjct: 440 ---EKIKTEKHKKLIHHYKYKIRHEIDYPMLKRLVPVGTILGEVRAE--VFDNGLTYGRQ 494

Query: 432 SPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
                 +V   K   +  +  V I      ++ G  +
Sbjct: 495 IGSYPLIVGIPKEIELNKLYDVVIVGHGFRSITGIPI 531


>gi|76803283|ref|YP_331378.1| Fe-S oxidoreductase [Natronomonas pharaonis DSM 2160]
 gi|76559148|emb|CAI50747.1| predicted Fe-S oxidoreductase [Natronomonas pharaonis DSM 2160]
          Length = 572

 Score = 83.1 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 56/341 (16%), Positives = 109/341 (31%), Gaps = 45/341 (13%)

Query: 165 IVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCE 224
           IV+   +    +   L    GC   C+FC  P   G    R+   VV E   L D+GV  
Sbjct: 177 IVEQHPDHPDYLICELETSRGCPYRCSFCTEP-MYGDPTFRTPDSVVSEVGGLADHGVRH 235

Query: 225 ITLLGQ-NVNAWRGKGLDGEKCTFSDLLYSLSEIKG-------LVRLRYTTSHPRDMSDC 276
             L  Q ++ A+ G G         +L   + ++               T +   + S  
Sbjct: 236 FRLGRQADILAYGGDGEAPNPDALRELYGGIRDVVPDLGTLHLDNMNPVTITDYPEKSRE 295

Query: 277 LIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV----------- 325
            I+   + +         ++S    + +  N   +A E  + +  +              
Sbjct: 296 GIRVIAEHNTPGDTAAFGLESADPVVREKNNLLVSAEECLEAVRIVNEAGGWRPGEAPGS 355

Query: 326 ----------RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA------QAFSFKYSP 369
                      P +    + + G  GE  + F      +  + Y       +    +   
Sbjct: 356 GPSVDANADRLPKLLPGINLVHGLEGERAETFEHNKQFLQDV-YDEGLMLRRINIRQVMA 414

Query: 370 RLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACV---GQIIE-VLIEKHGKEK 425
             GT  +     +  + K +     ++ +RE+  +     V   G ++  V +E    E 
Sbjct: 415 FEGTEMAETGADIAHDHKQQ-FKTYKQAVREEIDNPMLQRVAPPGTVLPNVYLE--YHED 471

Query: 426 GKLVGR-SPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYG 465
           G+  GR       +V       +G  + V +TD    ++ G
Sbjct: 472 GRTFGRQLGTYALLVALPGERELGRTVDVAVTDHGYRSVSG 512


>gi|299138990|ref|ZP_07032167.1| Radical SAM domain protein [Acidobacterium sp. MP5ACTX8]
 gi|298599144|gb|EFI55305.1| Radical SAM domain protein [Acidobacterium sp. MP5ACTX8]
          Length = 534

 Score = 83.1 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 55/307 (17%), Positives = 101/307 (32%), Gaps = 23/307 (7%)

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             +R  +  R+  G    VV  G  A    EE   R    + VV         + +    
Sbjct: 69  NALRGYEVGRMARGRGAWVVYGGIHATLFPEEAFER-GEAHAVVKGDGDIAWGKAVVDCL 127

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE-I 203
            G      +    D  + L+        ++ + A +    GC K C+FC V  T G +  
Sbjct: 128 AGTPERIYEGGRIDGDQFLAARWDLMPPEKYMWASVQTIRGCPKHCSFCSVWRTDGQQPR 187

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNV---------------NAWRGKGLDGEKCTFS 248
            R    V+DE   L   G   I L   N                N  +   L   +    
Sbjct: 188 QRRFQSVIDEIVDLRRLGFRFIALADDNFYPVTLTDLRLAREQNNTAKVDELMAIRTERF 247

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
            L+  L+++   +      +         + A    ++      + V++ +   LK++ +
Sbjct: 248 QLMEELAKLPKDMVFFTQITMEAGEDGEYLDAMRKANI--KGALVGVEAVTPEGLKAVFK 305

Query: 309 --RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
              ++     + +   +     + +   FI G P +    F AT+++  K G   A    
Sbjct: 306 DFNYSGDALAKQLQTFKK--HGVHVLGSFIFGLPTDKPATFDATVEMALKAGVTFAQFVM 363

Query: 367 YSPRLGT 373
            +P  GT
Sbjct: 364 MTPFPGT 370


>gi|47220778|emb|CAF99985.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 253

 Score = 83.1 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 41/219 (18%), Positives = 75/219 (34%), Gaps = 60/219 (27%)

Query: 57  NSMDDADLIVLNTCHIREKAAEKVYSFLGRI----------------------------- 87
           +   +ADL +LN+C ++  A +   + +  +                             
Sbjct: 16  DDPIEADLWLLNSCTVKNPAEDHFRNSIKALFVLGPEVMTDLPKRGQGCADWLAHCQLSQ 75

Query: 88  -----------RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL 136
                      R L   R  +     VV+AGCV QA+      +      ++G Q   R+
Sbjct: 76  KTVGEQLRGYRRRLSKDRKAQEQQKKVVLAGCVPQAQPRMDYLKG---LSIIGVQQIDRV 132

Query: 137 PELLERARFGKRVV--DTDYSVEDKFERLSIV---------------DGGYNRKRGVTAF 179
            E+++ A   +R     T Y   D    + ++               D    RK  +   
Sbjct: 133 VEVVDEAIKDQRARTRHTTYETCDAGHSVRLLGQKKDGGRRLGGARLDLPKIRKNPLIEI 192

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLI 218
           ++I  GC   CT+C   + RG   S  + ++V+  R+  
Sbjct: 193 ISINTGCLNACTYCKTKHARGDLASYPVEELVERTRQFF 231


>gi|163753851|ref|ZP_02160974.1| Mg-protoporphyrin IX monomethyl ester oxidative cyclase [Kordia
           algicida OT-1]
 gi|161326065|gb|EDP97391.1| Mg-protoporphyrin IX monomethyl ester oxidative cyclase [Kordia
           algicida OT-1]
          Length = 487

 Score = 83.1 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 49/324 (15%), Positives = 111/324 (34%), Gaps = 38/324 (11%)

Query: 113 EGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLS-----IVD 167
           +GE  +    +V+ +   +   ++  L+   + G+ V +  + V    + L      ++D
Sbjct: 130 QGEGEISLKELVDALSNNEDTSQIKGLVFE-KDGEFVKNPKHPVLRNLDELPMPAWDLID 188

Query: 168 GGYNRK------RGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN- 220
               RK         T  +    GC   C +C  P       S S + +    + L +  
Sbjct: 189 IEPYRKIWEAGGNEFTLNMATTRGCPFKCNWCAKPIYGNRYNSHSPAYITKHIKYLSETY 248

Query: 221 GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM-SDCLIK 279
           GV            W    + G K  +        + + L    Y  S    +  +  I+
Sbjct: 249 GVHRF---------WMCDDIFGLKPNWVQNFNKELKKENLTISYYIQSRVDLLLKEDTIE 299

Query: 280 AHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGF 339
           A  +    +  + +  +SGS  IL +M++     +  +    ++    ++ ++     G+
Sbjct: 300 ALAESG--LEEVWVGAESGSQAILDAMDKETKVEQIYEATRLLKEK--NVRVAFFIQFGY 355

Query: 340 PGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK--------AERL 391
             ET +D + T+D++ ++           P  GT      ++V +++K         +  
Sbjct: 356 LEETKEDIQKTIDMIKELVPDNIGVSVSYPLPGT---KFYDKVKDDLKLKANWTDSDDLA 412

Query: 392 LCLQKKLREQQVSFNDACVGQIIE 415
           +  +     Q        V +   
Sbjct: 413 MMFKGTYNTQFYRKLQRYVHKEFR 436


>gi|94969363|ref|YP_591411.1| radical SAM family Fe-S protein [Candidatus Koribacter versatilis
           Ellin345]
 gi|94551413|gb|ABF41337.1| Fe-S protein, radical SAM family [Candidatus Koribacter versatilis
           Ellin345]
          Length = 553

 Score = 83.1 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 60/383 (15%), Positives = 132/383 (34%), Gaps = 54/383 (14%)

Query: 43  RMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEK----------VYSFLGRIRNLKN 92
            +       GY  +    +A+     T  I E A +              ++ +   L  
Sbjct: 40  YLASTLREHGYSVLTCDFEAE-----TSEIIESARQSKPMIVGFSLIFQFYIRKFDALMQ 94

Query: 93  SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR---- 148
           +    G D    + G       EE LR  P ++ VV  +    L EL +    G+     
Sbjct: 95  ALRAAGVDCHFTIGGHFPSLSHEETLRMLPELDSVVRFEGEMTLLELADVIGTGRDWHDL 154

Query: 149 -----------VVDTDYSVEDKFERLSIVDGGYNRKR--GVTAFLTI-QEGCDKFCTFCV 194
                      V +   S+ D  + L   +  +  ++  G  A   +   GC + C+FC 
Sbjct: 155 QGIAYRGTTGVVTNPMRSLVDDLDSLPYPERNFEPEKALGRKALPLLASRGCARTCSFCS 214

Query: 195 VPYTRGI-----EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSD 249
           +             +R  ++V++E + + +     I L   +     G         F D
Sbjct: 215 IQTFYRTAPGKIVRTRKPAKVIEEMQAMHEERGISIFLFQDDDFPLFGPVWRRWAYDFVD 274

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
            ++     + ++      +   +    +  A  D  + + Y+   ++SG++  LK+++++
Sbjct: 275 CMHRSGLAQRVIWKINCRADAVE--PEIFTAMRDAGLYLVYM--GLESGNEEGLKTLHKQ 330

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS- 368
            +  +  + ++ ++ V   +     F++  PG T +  +  +  +  I      +  +  
Sbjct: 331 VSVEQNIRAVEMLKQV--GLLFEFGFMMFDPGSTLESIKQNLRFLRTILNDGCAAAVFCR 388

Query: 369 --PRLGTP-------GSNMLEQV 382
             P  GTP          +L  V
Sbjct: 389 MLPYDGTPIKDELERAGRLLGDV 411


>gi|325959575|ref|YP_004291041.1| Radical SAM domain-containing protein [Methanobacterium sp. AL-21]
 gi|325331007|gb|ADZ10069.1| Radical SAM domain protein [Methanobacterium sp. AL-21]
          Length = 472

 Score = 83.1 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 39/229 (17%), Positives = 87/229 (37%), Gaps = 13/229 (5%)

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG-IEISRSL 207
           ++D D         L +            + +    GC   C+FC      G     RS+
Sbjct: 160 IMDLDSLPLPARHLLPMDSYKLLNMDTKMSTMITSRGCPMQCSFCSSAALHGSKLRMRSV 219

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
            +++DE   L++        +G    A+        K    +L   + E + +  +   T
Sbjct: 220 DKILDEMEYLVNE-------MGIETIAFMDDTFTISKKRVIELCEGIEE-RNIDVMWGCT 271

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
           S    ++  L++       +   + + V+S   ++L ++N++ T    +   +  R  + 
Sbjct: 272 SRVDSLNKELLRKMKKAGCI--TVFMGVESADQQMLDTVNKQTTIERIKDAFEVSRQEK- 328

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
            I   +  ++G PG+T +  + T++ V ++  + A     +P  GT   
Sbjct: 329 -IRTIASVVLGMPGDTHESIKNTINFVKELNPSYAIFSLATPYPGTRFY 376


>gi|193212385|ref|YP_001998338.1| radical SAM domain-containing protein [Chlorobaculum parvum NCIB
           8327]
 gi|193085862|gb|ACF11138.1| Radical SAM domain protein [Chlorobaculum parvum NCIB 8327]
          Length = 502

 Score = 82.7 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 56/321 (17%), Positives = 114/321 (35%), Gaps = 29/321 (9%)

Query: 62  ADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRS 121
           AD++ ++   +++K+A++V                    + +V  G +  A  E+     
Sbjct: 66  ADMVFISAMAVQQKSAKEVIER------------CHNVGIKLVAGGPLFTAGYEQ----Y 109

Query: 122 PIVNVVVGPQTYYRLPELLERARFG-KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFL 180
           P V+  V  +     P  LE  + G    + T     D     +      + ++  +  +
Sbjct: 110 PDVDHFVLNEAELTFPPFLEDMKQGLPDRIYTTDKFADITSTPAPEWQLLDMEKYASMAI 169

Query: 181 TIQEGCDKFCTFCVVPYTRG-IEISRSLSQVVDEARKLIDNGVC-EITLLGQNVNAWRGK 238
               GC   C FC +    G    +++ +Q++ E   L   G    +  +  N  A +  
Sbjct: 170 QFSRGCPYQCDFCNITALLGHKIRTKTSAQIIRELDALRKLGWKGTVFFVDDNFIANK-- 227

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYT-TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQS 297
               +K     L+    +   L    YT  S        L+     +      + + +++
Sbjct: 228 -SYLKKELLPQLIAW-RKANSLTNQYYTECSINLADDPELMDLM--VQAGFNQVFIGIET 283

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRP-DIAISSDFIVGFPGETDDDFRATMDLVDK 356
             D  LK+  ++H     R ++D IR ++   + +   FIVGF  +T   F   ++ + +
Sbjct: 284 PDDSALKACGKQHNTS--RNLLDNIRLIQHAGLEVMGGFIVGFDSDTPSIFSKQIEFIQQ 341

Query: 357 IGYAQAFSFKYSPRLGTPGSN 377
            G   A         GT    
Sbjct: 342 SGIVTAMVGILQALPGTKLYE 362


>gi|307353419|ref|YP_003894470.1| Radical SAM domain-containing protein [Methanoplanus petrolearius
           DSM 11571]
 gi|307156652|gb|ADN36032.1| Radical SAM domain protein [Methanoplanus petrolearius DSM 11571]
          Length = 564

 Score = 82.7 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 53/285 (18%), Positives = 106/285 (37%), Gaps = 45/285 (15%)

Query: 132 TYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTI------QEG 185
             Y     +++ +      + DY  + +FER       + + + + AF  I        G
Sbjct: 256 QKYDTRYYVQQPKRQATQEELDYIYDLRFERRP-----HPKYQRIPAFDMIETSVTSHRG 310

Query: 186 CDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW----RGKG- 239
           C   C+FC +   +G E +SRS   ++ E + +  +G+        ++        G   
Sbjct: 311 CFGDCSFCAISAHQGKEIVSRSRDSILKEIKAI--SGMKNFRGTITDIGGPTANMYGSKC 368

Query: 240 --------------------LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIK 279
                               + G K   S L  +L +I+ + R++  +    +       
Sbjct: 369 ASGGCITHDCLKSGEGCKNLVPGTKEYLSILDEAL-KIRNVKRIQINSGIRYEQCILNDS 427

Query: 280 AHGDL--DVLMPYLHLPVQSGSDRILKSMNRRHTA--YEYRQIIDRIRSVRP-DIAISSD 334
           A   +    +   + +  +SGSD++LK MN+  T     + +    IR        ++  
Sbjct: 428 AIESILGKYISGRMKIAPESGSDKVLKLMNKPSTKIFEGFYKRFTGIRKKSGLKCILTPY 487

Query: 335 FIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            I G PGE + +   T + + + G + A S  ++P   T  + M 
Sbjct: 488 LITGHPGEGEKEILETSEFLKRFGLSGAQSQIFTPTPMTRSTAMY 532


>gi|83309185|ref|YP_419449.1| Fe-S oxidoreductase [Magnetospirillum magneticum AMB-1]
 gi|82944026|dbj|BAE48890.1| Fe-S oxidoreductase [Magnetospirillum magneticum AMB-1]
          Length = 629

 Score = 82.7 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 45/236 (19%), Positives = 84/236 (35%), Gaps = 27/236 (11%)

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
           D   S E KF++++       R+    A +   +GC   CTFC             + ++
Sbjct: 196 DECQSSEFKFDQMAWQPH---RRNKKLAIIPGAKGCVARCTFC--HRFDKGIRYIPVDRI 250

Query: 211 VDEARKLI-DNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSH 269
           + +   L+ D+ V  I+   +N           +K   ++L   L  +  L R       
Sbjct: 251 MRQIEILVRDHDVGFISFGDENFGT--------DKRWLAELCARLKPLDLLWR--VGGMR 300

Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329
              +S  +I    D      ++   +++GS R+L+ M ++ T  + R  I         I
Sbjct: 301 VNCVSPEIIAMMQDAG--CRFIAYGMETGSPRMLEVMEKKTTIEDNRNAIRWTIEA--GI 356

Query: 330 AISSDFIVGFPGETDDDFRATMDLVD-------KIGYAQAFSFKYSPRLGTPGSNM 378
           A     ++G PGET +  + T++          +               GTP    
Sbjct: 357 AAPIQIVLGMPGETSETVQETIEFCKHGQTFRPEQNPNDLSINYAQALPGTPLYEF 412


>gi|170741745|ref|YP_001770400.1| magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative
           cyclase [Methylobacterium sp. 4-46]
 gi|168196019|gb|ACA17966.1| magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative
           cyclase [Methylobacterium sp. 4-46]
          Length = 548

 Score = 82.7 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 54/303 (17%), Positives = 100/303 (33%), Gaps = 37/303 (12%)

Query: 95  IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK------- 147
            +     + ++ G  A     ++L  +P ++ VV  +    + E+      G+       
Sbjct: 88  REVRPGAVTLLGGVHATFMYGQVLPEAPWIDAVVRGEGEEIMVEVARAVAEGRWPAARAA 147

Query: 148 ----------RVVDTDYSVEDKFERLSIVDGGYNRKRGVT--------AFLTIQEGCDKF 189
                     RVV T  +   K       D         T        A   +  GC   
Sbjct: 148 IRGLAYLEEGRVVATPAAPTVKAIDALSPDWSVLEWEKYTYIPLGVRVAIPNMARGCPFT 207

Query: 190 CTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFS 248
           C+FC           R   +VVDE  +L +  GV    L  +     R K +   K    
Sbjct: 208 CSFCSQWKFWRDYRIRDPKKVVDEIVELKEKYGVGFFILADEEPTINRKKFIAFCK---- 263

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
           +L+    +I   +  R T     +    ++  +    ++  ++ L  ++ +   L   N+
Sbjct: 264 ELIEREVDILWGINTRVTDILRDE---DVLPLYRRAGLI--HVSLGTEAAAQLKLDLFNK 318

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
             T  + ++ I  +R     I + + FIVG   ET +    T  +        A    Y+
Sbjct: 319 ETTVAQNKKAIQLLREA--GIVVEAQFIVGLENETAETLEETYRMARDWAPDLANWSMYT 376

Query: 369 PRL 371
           P  
Sbjct: 377 PWP 379


>gi|194334232|ref|YP_002016092.1| radical SAM domain-containing protein [Prosthecochloris aestuarii
           DSM 271]
 gi|194312050|gb|ACF46445.1| Radical SAM domain protein [Prosthecochloris aestuarii DSM 271]
          Length = 520

 Score = 82.7 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 60/317 (18%), Positives = 116/317 (36%), Gaps = 29/317 (9%)

Query: 62  ADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRS 121
           AD++ ++   +++++A +V      I   K + +K      VV  G +  ++ E+     
Sbjct: 66  ADMVFVSAMAVQQRSAREV------IDQCKRAGVK------VVAGGPLFTSDHEQF---- 109

Query: 122 PIVNVVVGPQTYYRLPELLERARFG--KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAF 179
           P V+  V  +    L + LE    G  +RV   D   +         +    RK    A 
Sbjct: 110 PNVDHFVLNEAELTLSQFLEDLDRGILQRVYAADAFADISTTPAPQWNILEMRKYASMA- 168

Query: 180 LTIQEGCDKFCTFCVVPYTRG-IEISRSLSQVVDEARKLIDNGVC-EITLLGQNVNAWRG 237
           +    GC   C FC V    G    +++  Q++DE   L + G    +  +  N  A + 
Sbjct: 169 IQFSRGCPYHCDFCNVTALFGHKIRTKTSQQIIDELDGLREAGWKGSVFFVDDNFIAHK- 227

Query: 238 KGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQS 297
                +K     L+          R     S        L+     +      + + +++
Sbjct: 228 --SYLKKELLPKLIEWRRSNSVANRYYTECSINLADDSELMDLM--VAAGFNQVFIGIET 283

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRP-DIAISSDFIVGFPGETDDDFRATMDLVDK 356
             D  L++  ++H     R ++D +R ++   + +   FIVGF  +T   F   ++ +  
Sbjct: 284 PDDLALQACGKQHNTS--RNLLDNVRRIQHAGLEVMGGFIVGFDSDTPSIFSKQIEFIQN 341

Query: 357 IGYAQAFSFKYSPRLGT 373
            G   A         GT
Sbjct: 342 SGIVTAMVGLLQALPGT 358


>gi|150391027|ref|YP_001321076.1| radical SAM domain-containing protein [Alkaliphilus metalliredigens
           QYMF]
 gi|149950889|gb|ABR49417.1| Radical SAM domain protein [Alkaliphilus metalliredigens QYMF]
          Length = 440

 Score = 82.7 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 53/291 (18%), Positives = 102/291 (35%), Gaps = 29/291 (9%)

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
            R  K    K      VV+ G  A    +E        + ++  +     P+ L      
Sbjct: 80  ARRFKEKGSK------VVMGGPHATLLPDEAKEHC---DYIIIGEAEETWPKFLNDFYDN 130

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQ-EGCDKFCTFCVVPYTRGIE-IS 204
             +           + L I       KR  T        GC   C++C +      E   
Sbjct: 131 TPLERYFCIDVPSLDNLPIPRRDLIGKRYFTKGAVFATRGCPYQCSYCNLKQIYFDEFRM 190

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R + +V+++ R +             N          G+      L+  L ++      +
Sbjct: 191 RPIQEVIEDIRSIKS---KYFVFWDDNFF--------GDIKYAKILMKELKKLNKKWAAQ 239

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR-HTAYEYRQIIDRIR 323
            T    +D  + L++   +      YL + ++S S+  L+ +N+  +   +Y+QIID I 
Sbjct: 240 VTLERCQD--EELLQLARESG--CMYLFIGLESFSEESLQGVNKGMNDVVKYKQIIDLIH 295

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
           +    I++ +  I GF  +  D F+ T++  + +G         +P   TP
Sbjct: 296 TY--GISVQAGIIFGFDYDKKDTFKKTLEACNDLGIDGVTVSILTPLPQTP 344


>gi|330507415|ref|YP_004383843.1| radical SAM domain-containing protein [Methanosaeta concilii GP-6]
 gi|328928223|gb|AEB68025.1| radical SAM domain protein [Methanosaeta concilii GP-6]
          Length = 500

 Score = 82.7 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 43/255 (16%), Positives = 103/255 (40%), Gaps = 19/255 (7%)

Query: 116 EILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRG 175
           E++     V+ +   +     PE+  +   G+ V +         +++ +     NR   
Sbjct: 158 EVMGEKVDVDHIYLGEGESDFPEICRQIIRGENVPEVLRGSAVPGDKIPV-----NRGAT 212

Query: 176 VTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW 235
           +   + I  GC + C FC  P  R     R +  ++ + R  ++ G  +I L  ++V ++
Sbjct: 213 IGGIVEIGRGCWRGCAFCS-PTMRS-VRHRPIENILKDVRVNLECGQEDIILHSEDVFSY 270

Query: 236 RGKGLDGEKCTFSDLLYSLSEI-KGLVRLRYTTSHPRDMSDCLIKAHGDLDVL---MPYL 291
             KG    +   ++L+  + ++    +   + +      +  L++    +  +     ++
Sbjct: 271 GSKGTRPNEKKMTELVTEVKKLGPKTMDFSHLSLASVHSNQGLLREISKIVGIGSDQNHM 330

Query: 292 H--LPVQSGSDRILKSMN----RRHTAYEYRQIIDRIRSVRPD--IAISSDFIVGFPGET 343
              + +++GS RILK              + QI++    +  +      +  ++G PGET
Sbjct: 331 SAWIGIETGSCRILKMHMPQKALPGETENWPQIVEDCYRLFDEESWLPVASLVLGLPGET 390

Query: 344 DDDFRATMDLVDKIG 358
            +D   T +LV+ + 
Sbjct: 391 AEDVIRTTELVESLK 405


>gi|308275233|emb|CBX31830.1| hypothetical protein N47_N26550 [uncultured Desulfobacterium sp.]
          Length = 475

 Score = 82.7 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 52/304 (17%), Positives = 97/304 (31%), Gaps = 41/304 (13%)

Query: 99  GDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF------------- 145
             + VV  G    A  E +L+  P+++  V  +    L ELLE  R              
Sbjct: 95  PQIQVVFGGAHVSALKERVLKDYPVIDYTVVGEGEETLAELLENGRNNISSVMGLIYREK 154

Query: 146 -------GKRVVDTD-----YSVEDKFERLSIVDGG--YNRKRGVTAFLTIQEGCDKFCT 191
                  GKR    +     +   +K E   +      +N  +  ++      GC   C+
Sbjct: 155 TGEICYTGKRPNSLELDLLPFPAYEKLEGFPLAYRAPLFNYPKAPSSSCITSRGCPYACS 214

Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFSDL 250
           +C            S   + +  R L +  GV  I          R + +D  K   +  
Sbjct: 215 YCDRSVFGRSFRFNSAEYMYEHVRYLNERFGVRHIIFYDDQFTFKRERVVDFAKMMINR- 273

Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
                    L            +   L+    +       + + +++G + +L    +  
Sbjct: 274 --------PLGVSFNCVVRAEHIDYDLLLMLKEAG--CWMISIGIETGDENLLSRHRQNA 323

Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370
                 + I  I+     I     F++G PGET+     +M+ V      +    K++P 
Sbjct: 324 DLAFLSEKIKLIKKA--GIRTKGLFMIGLPGETEAAINKSMEYVFSNPIDELNVAKFTPF 381

Query: 371 LGTP 374
            G+P
Sbjct: 382 PGSP 385


>gi|268325552|emb|CBH39140.1| conserved hypothetical protein, radical SAM superfamily [uncultured
           archaeon]
          Length = 570

 Score = 82.7 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 49/295 (16%), Positives = 115/295 (38%), Gaps = 26/295 (8%)

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            L    +L ++         ++V G  A       ++    ++ ++  Q    L +++ +
Sbjct: 168 TLVEFEDLLSNPALRKYMAKIIVGGSGAWQISSANMQDKLGIDTILIGQAENSLLQIVRK 227

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           A  G+++           + + I+     +K  +   + I  GC + C FC  P  R   
Sbjct: 228 ALNGEKLDRVITMQIPVDKEIPII-----KKPSIYGTVEITRGCGRGCAFCS-PTLRQRY 281

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG-LDGEKCTFSDLLYSLSEIKGLV 261
            S  L  ++ E      +G   I L   +V  ++ K      +     L+  + +I G+ 
Sbjct: 282 -SFPLEHILQEVELNAKSGTRAILLQTDDVFLYKSKPNFIPNREAIVKLIQDIDKIGGVD 340

Query: 262 RLRYTTSH----------PRDMSDCLIK--AHGDLDVLMPYLHLPVQSGSDRILKSMNR- 308
            ++   +             +++  L++       D     + + +++GS ++++   R 
Sbjct: 341 YIQIAHASLAPVVYDRKIVEEIAPILVEKSLWRCNDKRCASIEVGIETGSAQLIEKYMRG 400

Query: 309 ---RHTAYEYRQIIDRIRSVRPD--IAISSDFIVGFPGETDDDFRATMDLVDKIG 358
               +   +++ I+ +   +  D  I   +  I+G PGE  +D  AT+ L+DK+ 
Sbjct: 401 KMLPYKPEQWQDIVVQSIGILNDNNIYPLATLILGLPGEQKEDILATITLLDKLK 455


>gi|326203138|ref|ZP_08193004.1| Radical SAM domain protein [Clostridium papyrosolvens DSM 2782]
 gi|325986784|gb|EGD47614.1| Radical SAM domain protein [Clostridium papyrosolvens DSM 2782]
          Length = 459

 Score = 82.7 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 62/332 (18%), Positives = 111/332 (33%), Gaps = 33/332 (9%)

Query: 57  NSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEE 116
           +  DDAD++ ++       A  K    +               ++ V + G    A  EE
Sbjct: 56  SDNDDADIVGIS--AFT--ANVKRGYEIAEF--------YRNRNVAVFMGGHHVSALPEE 103

Query: 117 ILRRSPIVNVVVGPQTYYRLPELLERARFGK-----RVVDTDYSVEDKFERLSIVDGGYN 171
            L+    V  ++G         +L+  + GK     +  +     E  F RL ++    N
Sbjct: 104 ALKYCDAV--IIGEGDIILQK-VLDDFKEGKMKGIYKAEERYDLTEMPFSRLDLLPEKVN 160

Query: 172 RKRGVTAFLTIQEGCDKFCTFCVVPYTRGI-EISRSLSQVVDEARKLIDNGVCEITLLGQ 230
                T  + +  GC   C FC VP   G     R   +++ E + + +N   E   +  
Sbjct: 161 YLFKPT--IHLTRGCPHSCDFCCVPPFYGRKLRKRPADEIIAELKHIKENYTQESNWV-- 216

Query: 231 NVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY 290
               +       +K    D+L  +  +  L    +      +    L+        L  Y
Sbjct: 217 ---HFNDDNFFVDKEYAKDVLRKMIPLD-LKFQAFAGLDIAEDD-ELLDLAKQAGALGFY 271

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
           +        D    +    +T Y Y + + +I+     I + +  +VGF  ET D F   
Sbjct: 272 VGFDALHSEDLE-GATKSVNTKYNYIKWVKKIQE-DHGIPVIAGVVVGFDHETKDSFEKL 329

Query: 351 MDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQ 381
            + + +   A        P  GT     M EQ
Sbjct: 330 YEFLVESHVASMSMNILYPYPGTKLFDRMKEQ 361


>gi|218245870|ref|YP_002371241.1| hopanoid biosynthesis associated radical SAM protein HpnJ
           [Cyanothece sp. PCC 8801]
 gi|257058918|ref|YP_003136806.1| hopanoid biosynthesis associated radical SAM protein HpnJ
           [Cyanothece sp. PCC 8802]
 gi|218166348|gb|ACK65085.1| hopanoid biosynthesis associated radical SAM protein HpnJ
           [Cyanothece sp. PCC 8801]
 gi|256589084|gb|ACU99970.1| hopanoid biosynthesis associated radical SAM protein HpnJ
           [Cyanothece sp. PCC 8802]
          Length = 479

 Score = 82.3 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 60/354 (16%), Positives = 115/354 (32%), Gaps = 58/354 (16%)

Query: 53  YERVNS----MDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGC 108
           Y+ V        D +L+++ T         K    +            +  D+ V + G 
Sbjct: 57  YQTVEDVLKIAKDYELVIMYTSTPTLPNDVKCAEAIKA----------QNPDIQVGLLGA 106

Query: 109 VAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE------------RARFGKRVVDTDYSV 156
            A     + L  +PI++ V   +  Y   EL E            R R GK     +  +
Sbjct: 107 HAAVLPTQTLEENPILDFVCRNEFDYTCKELAEGKPYDQIKGLSYRDRHGKIQHTEEREL 166

Query: 157 EDKFERLSIVDGGYNRKRGVTAFLT-----------IQEGCDKFCTFCVVPYTRGIEISR 205
              ++ +  V   Y     +  +                GC   CTFC+ P T G    R
Sbjct: 167 IHDWDSMPSVFPVYADNLNIRNYFIGYLLHPYISLYTGRGCPAKCTFCLWPQTIGGHQYR 226

Query: 206 --SLSQV---VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
             +   V   +  A+ L  + + E           + + +            ++SE    
Sbjct: 227 AKTPEAVGKEMALAKSLWGDSIREYFFDDDTFTIDKKRVI------------AISEHLKK 274

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
           + L ++ +   ++    +K   D    +  L +  +SG+  +L  + +       R+ ++
Sbjct: 275 LNLTWSCNARANLDYDTLKILKD--NGLRLLLVGFESGNQTVLDGVKKGIKLEVARKFME 332

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
               +   I +   FI+G P ET      T+    ++          SP  GT 
Sbjct: 333 NCTKL--GIKVHGAFIIGLPNETKKTIEDTIRFACEVSPHTIQVSIASPYPGTE 384


>gi|170764245|ref|ZP_02639239.2| radical SAM domain protein [Clostridium perfringens CPE str. F4969]
 gi|170714882|gb|EDT27064.1| radical SAM domain protein [Clostridium perfringens CPE str. F4969]
          Length = 559

 Score = 82.3 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 54/317 (17%), Positives = 112/317 (35%), Gaps = 34/317 (10%)

Query: 59  MDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEIL 118
            +  D++   +C+I          F+ R+  L         ++ ++  G     EG+E L
Sbjct: 53  EEKPDVVAF-SCYIWN------MEFVNRLAELIKL---VDPNIEILYGGPEVSYEGKEFL 102

Query: 119 RRSPIVNVVVGPQTYYRLPELLERARFGK-------------RVVDTDYSVEDKFERLSI 165
                  V+VG         +L +   GK             +V +     E     L  
Sbjct: 103 ENHEGEYVIVGEGEKTFREFVLYKLGEGKIEDIKGLNYKRDGKVFENPKRPEMDMNELVF 162

Query: 166 VDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEI 225
                        +     GC   C +C+     G      + +V  E +  ++ G+  +
Sbjct: 163 PYTYEEDINNKIVYYEASRGCPFKCKYCLSSVMHG-VRFLDVERVKKELKYFMERGLKLV 221

Query: 226 TLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLD 285
             + +  N  R   +        +LL  LSE     R  +  +    +++  I+   +  
Sbjct: 222 KFVDRTFNCNREYTV--------ELLKYLSEQDTETRFHFEVAADL-LTEEQIEILNNAP 272

Query: 286 VLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDD 345
                L + VQ+ ++ +L ++NR  T    ++ + ++ S + ++    D I G PGE  +
Sbjct: 273 KGRFQLEVGVQTTNNEVLHNINRYITYENIKEKVLKVASGK-NVMQHLDLIAGLPGEDLE 331

Query: 346 DFRATMDLVDKIGYAQA 362
            F+ + + V  I   + 
Sbjct: 332 SFKKSFNDVHAIRPDEI 348


>gi|52549561|gb|AAU83410.1| Fe-S oxidoreductase [uncultured archaeon GZfos28B8]
          Length = 521

 Score = 82.3 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 54/311 (17%), Positives = 120/311 (38%), Gaps = 24/311 (7%)

Query: 63  DLIVLN--TCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRR 120
           D + +N  T    + A         +   L    +    + +VV  G  A    +E +  
Sbjct: 114 DFLGINPPTSEFVDIADIGPPYNRVKFFELMRKPVM--KEKIVVAGGKAAWQLADEAIMN 171

Query: 121 SPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFL 180
              V+ V   +    +P L +    G+ +       E   + +  + G       +   +
Sbjct: 172 KLNVDYVHLGEGELTIPALFKSILEGEELPGIIKGKEPNTDEIPNIRGAT-----IHGLV 226

Query: 181 TIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL 240
            I  GC + C+FC  P  +     +S+  VV + R  ++ G   I L  +++  +  K +
Sbjct: 227 EISRGCGRGCSFC-TPTMQ-KLRFKSVEHVVRDVRTNVEAGQRSICLHSEDILRYGAKKI 284

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTTS--HPRDMSDCLIKAHGD-----LDVLMPYLHL 293
             +     +L+ S++ ++G+  +  +         +  L+ A  +     LD        
Sbjct: 285 APDDARVLNLIKSVASVEGIESVGASHIALATVYHNPDLLNAVSETCHSMLDQDWQGAQT 344

Query: 294 PVQSGSDRI----LKSMNRRHTAYEYRQIIDRIRSVRPD--IAISSDFIVGFPGETDDDF 347
            +++GS R+    ++       A ++++I+ +   +  D     ++  I G P ET DD 
Sbjct: 345 GIETGSARLIAKHMRGKALPSPAEKWQEIVTQAFGILDDNNWFCAATMINGLPEETTDDV 404

Query: 348 RATMDLVDKIG 358
             +++LV+ + 
Sbjct: 405 IKSIELVEDLK 415


>gi|322418141|ref|YP_004197364.1| cobalamin B12-binding domain-containing protein [Geobacter sp. M18]
 gi|320124528|gb|ADW12088.1| cobalamin B12-binding domain protein [Geobacter sp. M18]
          Length = 474

 Score = 82.3 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 63/383 (16%), Positives = 128/383 (33%), Gaps = 47/383 (12%)

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVN-VVVGPQTYYRLPEL-- 139
            +G    +  +      +   ++ G       EEIL+ S  V+ +V+G         L  
Sbjct: 80  TVGDAVKVLETAKAVNPETATILGGVHPSFMYEEILQTSAAVDFIVIGEGEEPLRRLLLA 139

Query: 140 ------------LERARFGKRVVDTDYSVEDKFERLSIVD--------GGYNRKRGVTAF 179
                       +     G+  V     + +  + L+             +       A 
Sbjct: 140 LERGEGPAAVAGIAYREGGRIKVTPKAPLIEDLDALTPAWDLVEWPLYSYFIIPDSRFAA 199

Query: 180 LTIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRG 237
           ++   GC   C FC           +R   +VV+E  +L    GV    +  ++      
Sbjct: 200 ISTSRGCSHDCAFCSQQQFWQKSWRARDPLKVVEEVAQLHRRYGVNVFLVTDEHPTR--- 256

Query: 238 KGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQS 297
                +   +  LL +L E +GL       +   D+              + ++ L ++S
Sbjct: 257 -----DAARWETLLDALIE-EGLPIHLILETRAEDVVRDREIFWKYRKAGVVHVSLGIES 310

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
              ++L+ + +       ++ ++ I   R DI   + FI+GFP ET    +AT+ +  + 
Sbjct: 311 ADRQLLERLGKGMQPDVAKEALEIIH--RHDIVSEASFILGFPDETPATVQATLKMAQQY 368

Query: 358 GYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERL-----------LCLQKKLREQQVSFN 406
               A  F  +P         L+ +       R            + L++        + 
Sbjct: 369 NPDNANFFALTPWPYGGMYRELKPLIRETDYARYNFIDPVLEPEAMSLKELQGALNDCYR 428

Query: 407 DACVGQIIEVLIEKHGKEKGKLV 429
              +G+++EV+  K    +G LV
Sbjct: 429 RFYMGKMLEVMTMKDTFRRGYLV 451


>gi|18310627|ref|NP_562561.1| radical SAM domain protein [Clostridium perfringens str. 13]
 gi|18145308|dbj|BAB81351.1| Mg-protoporphyrin IX monomethyl ester oxidative cyclase
           [Clostridium perfringens str. 13]
          Length = 559

 Score = 82.3 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 54/317 (17%), Positives = 112/317 (35%), Gaps = 34/317 (10%)

Query: 59  MDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEIL 118
            +  D++   +C+I          F+ R+  L         ++ ++  G     EG+E L
Sbjct: 53  EEKPDVVAF-SCYIWN------MEFVNRLAELIKL---VDPNIEILYGGPEVSYEGKEFL 102

Query: 119 RRSPIVNVVVGPQTYYRLPELLERARFGK-------------RVVDTDYSVEDKFERLSI 165
                  V+VG         +L +   GK             +V +     E     L  
Sbjct: 103 ENHEGEYVIVGEGEKTFREFVLYKLGEGKIEDIKGLNYKRDGKVFENPKRPEMDMNELVF 162

Query: 166 VDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEI 225
                        +     GC   C +C+     G      + +V  E +  ++ G+  +
Sbjct: 163 PYTYEEDINNKIVYYEASRGCPFKCKYCLSSVMHG-VRFLDVERVKKELKYFMERGLKLV 221

Query: 226 TLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLD 285
             + +  N  R   +        +LL  LSE     R  +  +    +++  I+   +  
Sbjct: 222 KFVDRTFNCNREYTV--------ELLKYLSEQDTETRFHFEVAADL-LTEEQIEILNNAP 272

Query: 286 VLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDD 345
                L + VQ+ ++ +L ++NR  T    ++ + ++ S + ++    D I G PGE  +
Sbjct: 273 KGRFQLEVGVQTTNNEVLHNINRYITYENIKEKVLKVASGK-NVMQHLDLIAGLPGEDLE 331

Query: 346 DFRATMDLVDKIGYAQA 362
            F+ + + V  I   + 
Sbjct: 332 SFKKSFNDVHAIRPDEI 348


>gi|158522439|ref|YP_001530309.1| radical SAM domain-containing protein [Desulfococcus oleovorans
           Hxd3]
 gi|158511265|gb|ABW68232.1| Radical SAM domain protein [Desulfococcus oleovorans Hxd3]
          Length = 477

 Score = 82.3 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 49/291 (16%), Positives = 93/291 (31%), Gaps = 24/291 (8%)

Query: 88  RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147
           R    +   +   + V++ G  A A  EE L      + VV  +    +  ++E A  G+
Sbjct: 84  RAYWIADQYKKRGVPVIMGGFHATALPEEALSHC---DAVVKGEAEGVINRVIEDAVNGR 140

Query: 148 RVVDTDYSVEDKFERLSIVDGGY-NRKRGVTA--FLTIQEGCDKFCTFCVV-PYTRGIEI 203
                +       E L        NRK        +    GC   C FC V P+      
Sbjct: 141 MKGIYEQKAPHPLEGLPTPRYDLINRKNFFMPANPVQATRGCPYHCDFCSVSPFFGSRHR 200

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
            R ++ V+ +    +      + ++  N+   R   L+            + ++      
Sbjct: 201 KRPVADVLAD----MAAAGPYLVIVDDNLMIDRDYALELFTAMKPLNKVWIGQVD----- 251

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
                        L+KA  D       L+L +++     L    +             ++
Sbjct: 252 -----VRSAADGELMKAAADAG--CRMLYLGIETLDKVSLARTGKTPN-LHTDAQAALMQ 303

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
             R  I      I+GF  +T    R  ++  D++     F +  +P  G+P
Sbjct: 304 IKRHHIDAFVSMIIGFDNDTVATARQIVEFCDRMRVPILFLYILTPIPGSP 354


>gi|291546207|emb|CBL19315.1| 2-methylthioadenine synthetase [Ruminococcus sp. SR1/5]
          Length = 74

 Score = 82.3 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 30/73 (41%)

Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
          +    S GC  N+ DS  M  +  + G+E  +    AD IV+NTC   + A E+    + 
Sbjct: 2  KILFISLGCDKNLADSEEMLGLLTAGGHEITDDETQADAIVINTCCFIKDAKEESVEAIL 61

Query: 86 RIRNLKNSRIKEG 98
           +   K       
Sbjct: 62 EMAEYKKQEAAMH 74


>gi|182420491|ref|ZP_02642555.2| radical SAM domain protein [Clostridium perfringens NCTC 8239]
 gi|182380964|gb|EDT78443.1| radical SAM domain protein [Clostridium perfringens NCTC 8239]
          Length = 559

 Score = 82.3 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 54/317 (17%), Positives = 112/317 (35%), Gaps = 34/317 (10%)

Query: 59  MDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEIL 118
            +  D++   +C+I          F+ R+  L         ++ ++  G     EG+E L
Sbjct: 53  EEKPDVVAF-SCYIWN------MEFVNRLAELIKL---VDPNIEILYGGPEVSYEGKEFL 102

Query: 119 RRSPIVNVVVGPQTYYRLPELLERARFGK-------------RVVDTDYSVEDKFERLSI 165
                  V+VG         +L +   GK             +V +     E     L  
Sbjct: 103 ENHEGEYVIVGEGEKTFREFVLYKLGEGKIEDIKGLNYKRDGKVFENPKRPEMDMNELVF 162

Query: 166 VDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEI 225
                        +     GC   C +C+     G      + +V  E +  ++ G+  +
Sbjct: 163 PYTYEEDINNKIVYYEASRGCPFKCKYCLSSVMHG-VRFLDVERVKKELKYFMERGLKLV 221

Query: 226 TLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLD 285
             + +  N  R   +        +LL  LSE     R  +  +    +++  I+   +  
Sbjct: 222 KFVDRTFNCNREYTV--------ELLKYLSEQDTETRFHFEVAADL-LTEEQIEILNNAP 272

Query: 286 VLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDD 345
                L + VQ+ ++ +L ++NR  T    ++ + ++ S + ++    D I G PGE  +
Sbjct: 273 KGRFQLEVGVQTTNNEVLHNINRYITYENIKEKVLKVASGK-NVMQHLDLIAGLPGEDLE 331

Query: 346 DFRATMDLVDKIGYAQA 362
            F+ + + V  I   + 
Sbjct: 332 SFKKSFNDVHAIRPDEI 348


>gi|254489363|ref|ZP_05102566.1| radical SAM domain protein [Roseobacter sp. GAI101]
 gi|214041870|gb|EEB82510.1| radical SAM domain protein [Roseobacter sp. GAI101]
          Length = 466

 Score = 82.3 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 58/276 (21%), Positives = 95/276 (34%), Gaps = 20/276 (7%)

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTI-QEGCDKFCTFCVVPYTRG 200
             RF  R +D     +     L+     +    GV +   I   GC   C +C       
Sbjct: 161 APRFLHRQIDDYPFPDRAAIDLNHYMDIWQTHHGVRSVSLITARGCPYACQWCSHSVFGK 220

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
               R+   V+ E  ++ D    +      +V     + LD     F+DLL         
Sbjct: 221 SYRHRTPENVIAELLEIRDVYQPDQVWYADDVFTMNFRWLD----RFADLLEQ------- 269

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVL-MPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
             L Y                  L  +    + +  +SGS RIL +M RR  A   R++I
Sbjct: 270 NNLHYPFEAISREDRLTEDVIKTLKRMGCYRVWIGAESGSQRILDAMERRTNAKRMREMI 329

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP----- 374
             +++    I   +  +VG+ GET DD  AT+  +         S    P  GTP     
Sbjct: 330 TLLQN--HGIRAGTFIMVGYEGETFDDIAATVQHLKAALPDDVLSTLSYPIKGTPYHDQV 387

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACV 410
              ++ Q D     ER   ++ +      +  +A +
Sbjct: 388 ADRLVMQGDWATTTERDAKIKGRHSRLYYNSIEAWI 423


>gi|302348325|ref|YP_003815963.1| Radical SAM domain protein [Acidilobus saccharovorans 345-15]
 gi|302328737|gb|ADL18932.1| Radical SAM domain protein [Acidilobus saccharovorans 345-15]
          Length = 479

 Score = 82.3 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 56/243 (23%), Positives = 89/243 (36%), Gaps = 27/243 (11%)

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT--------AFLTIQEGCDKFCTFCVV 195
              K VV  D    +  ++L   D         T        A +    GC   C +C+ 
Sbjct: 156 EGSKTVVTPDRPFIEDLDKLPWPDRDLLDMDKYTLFNKPIRIAHVMASRGCPYGCMYCIT 215

Query: 196 PYTRGIEISR-SLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS 253
            Y  G      S   VVDE   L++     EI        A            +  +   
Sbjct: 216 SYYWGRRYRYRSAKNVVDEIEYLVNRYRAREIVFTDDEFTA-----------NWRFVREF 264

Query: 254 LSEIK--GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
           ++E+K  GL       S    ++  ++K     D     L+  V+S S   L  + ++ T
Sbjct: 265 IAELKSRGLDVKFSCGSRVDHVNKDIMKLL--YDNGCNALYFGVESASQETLNRIGKKIT 322

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
             + R++ +  R ++   A  S FI+GFP ET DD + T  L  ++    A     +P  
Sbjct: 323 IEQARRVFEWKRELK-GFATGS-FILGFPWETVDDMKRTAQLAVELSPDYAQFTALTPYP 380

Query: 372 GTP 374
           GTP
Sbjct: 381 GTP 383


>gi|326790414|ref|YP_004308235.1| radical SAM protein [Clostridium lentocellum DSM 5427]
 gi|326541178|gb|ADZ83037.1| Radical SAM domain protein [Clostridium lentocellum DSM 5427]
          Length = 443

 Score = 82.3 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 64/342 (18%), Positives = 122/342 (35%), Gaps = 38/342 (11%)

Query: 44  MEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLV 103
           +E  F+    E ++     DL+V+    +    A++ Y    + R            + V
Sbjct: 40  IETAFYDDRIELIDYDAPTDLVVI---TVETYTAKRSYEIAKKYRE---------RGVTV 87

Query: 104 VVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFER- 162
           V+ G       EE+ + +   +++VG        E+LE  R G+  + T Y  E  F   
Sbjct: 88  VMGGYHTTLVPEEVKQHAH--SIMVGNAENT-WQEMLEDFRKGQ--LKTCYKGETVFSNT 142

Query: 163 LSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG-IEISRSLSQVVDEARKLIDNG 221
           L        +K    + +    GC   C FC +         +R   Q+V + +K   + 
Sbjct: 143 LPDKSIFKGKKYLPVSLVETGRGCCNRCDFCAIAGYYSCKYFARPHEQIVADIKK---SE 199

Query: 222 VCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAH 281
                L+  N+ A         K     L   ++ + G+      T       + L+KA 
Sbjct: 200 HKYHFLVDDNLMA--------NKANALGLFEKITPL-GIKWAGQGTLSMAK-DEKLLKAM 249

Query: 282 GDLDVLMPYLHLPVQSGSDRILKSMNRRHT--AYEYRQIIDRIRSVRPDIAISSDFIVGF 339
                    + +  +S     L+ MN+     + E  +++ RI      + I + F+ G+
Sbjct: 250 KQSG--CEIILIGFESLEQENLRQMNKSINILSKENDELVKRIHDA--GMGIYATFVFGY 305

Query: 340 PGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
             +T+      +   +K  +  A      P  GTP    L++
Sbjct: 306 DYDTEATIERALKFSEKHKFYTAAFNHLLPFPGTPLYKRLKE 347


>gi|269928522|ref|YP_003320843.1| Radical SAM domain-containing protein [Sphaerobacter thermophilus
           DSM 20745]
 gi|269787879|gb|ACZ40021.1| Radical SAM domain protein [Sphaerobacter thermophilus DSM 20745]
          Length = 479

 Score = 82.3 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 57/355 (16%), Positives = 107/355 (30%), Gaps = 59/355 (16%)

Query: 92  NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVD 151
               +   D ++   G  A    + +LR     + V+G +    L + +     G     
Sbjct: 92  RRVRQINPDAVIGFYGLYAWLNADYLLREHG--DFVIGGEYERPLLDFVRALAAGSDEPV 149

Query: 152 TDYSVEDKFERLSIVDGGYNRKRG-------------------VTAFLTIQEGCDKFCTF 192
              S  D     S+    +                           +     GC   C  
Sbjct: 150 EGVSTRDYRVPPSLARIDFPMPERASLPAMKRYAHLMIDGTAIPAGYTETTRGCHHTCLH 209

Query: 193 C-VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLL 251
           C VVP  RG   +     V+++ R+ +  G   IT    +        L+G         
Sbjct: 210 CPVVPIYRGRFFAIPREVVLEDIRRQVRQGAGHITFGDPD-------FLNGPTHALRICR 262

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
              +E   +     T          LI     L     ++   V+S S+ +L  +++ HT
Sbjct: 263 AMHAEFPHVTFDMTTRIEHILKHRDLIPEFAQLG--CVFVVSAVESVSEMVLDRIDKGHT 320

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY-AQAFSFKYSPR 370
             +  + +  + S    IA+    +   P  T +D+   +  V++           +S R
Sbjct: 321 KADVVEALRILESA--GIAMRPSLLPFTPWTTMEDYLELLRFVEEYDLIDNIDPVHFSIR 378

Query: 371 ---LGTPGSNMLEQVDENVKAE------------------RLLCLQKKLREQQVS 404
                 PGS +L++     K                    RL  LQ+++     +
Sbjct: 379 LLVP--PGSALLDR--PETKEWLGPLDEAAFTYTWRSPDPRLDALQQEVARIAEA 429


>gi|118591258|ref|ZP_01548657.1| Radical SAM [Stappia aggregata IAM 12614]
 gi|118436334|gb|EAV42976.1| Radical SAM [Stappia aggregata IAM 12614]
          Length = 596

 Score = 82.3 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 50/300 (16%), Positives = 111/300 (37%), Gaps = 22/300 (7%)

Query: 86  RIRNLKNSRIKEGGDLLVV---VAGC--VAQAEGEEILR-RSPIVNVVVGPQTYYRLPEL 139
           R  +L    +K+G  + +    V+GC  +     +E++R +   V    G     RL ++
Sbjct: 99  RAGDLARIFLKKGLPVAIGGFHVSGCISMLDEMPDEMVRLQKEGVVYFAGEAEDGRLDDV 158

Query: 140 LERARFGKRVVDTDYSVEDK---FERLSIVDGGYNR-KRGVTAFLTIQEGCDKFCTFCVV 195
              A  G      ++  +      E   I+   + R   G  +   +  GC   C+FC +
Sbjct: 159 FRDAFSGDLKPLYNFMADLPSLEGEPTPILPSQHIRFTAGSHSSFDLGRGCPFQCSFCTI 218

Query: 196 PYTRGI-EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL 254
              +G     RS   +    R  +  G+    +   N    R       +  F  L+   
Sbjct: 219 INVQGRKSRFRSADDLEQIIRDNVAQGIDRFFITDDNFARNREW-----EPLFDRLIQLR 273

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS-DRILKSMNRRHTAY 313
            +    ++            D  I+        +  + + +++ + D +L +  R++   
Sbjct: 274 EQENFDIKFIIQVDTLCHRIDGFIE--KATRAGVNRVFIGLENINPDNLLAAKKRQNKIT 331

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV-DKIGYAQAFSFKYSPRLG 372
           EYR+++ + R+        + +I+GFP +T +     ++++  ++       F  +P  G
Sbjct: 332 EYREMLQKWRA--HGATTYAGYIIGFPADTKESVLHDVEIIKKELPLDLLEFFYLTPLPG 389


>gi|52352361|gb|AAU43651.1| Fe-S oxidoreductases family 2 [uncultured archaeon GZfos23H7]
          Length = 540

 Score = 82.3 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 48/295 (16%), Positives = 117/295 (39%), Gaps = 26/295 (8%)

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            L    +L ++         ++V G  A       ++    ++ ++  Q  + L ++  +
Sbjct: 137 TLVEFEDLLSNPALRKYRAKIIVGGSGAWQILNSNMQDKLGIDTILIGQAEHSLIQIFRK 196

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           A  G+++         + + + I+     +K  +   + I  GC + C FC  P  R   
Sbjct: 197 ALNGEKLDKIITMQIPENKEIPII-----KKPSIYGTVEITRGCGRGCAFCS-PTLRQRY 250

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG-LDGEKCTFSDLLYSLSEIKGLV 261
            S  L  ++ E       G   I L   +V  ++ K      +     L+  + +I+G+ 
Sbjct: 251 -SLPLKHILKEVELNAKRGTRAILLQTDDVFLYKSKPNFIPSREAIVKLIQDIDKIEGVD 309

Query: 262 RLRYTTSH----------PRDMSDCLIK--AHGDLDVLMPYLHLPVQSGSDRILKSMNR- 308
            ++   +             +++  L++       D     + + +++GS R+++   + 
Sbjct: 310 YIQIAHASLAPVVYDRKIVEEIAPILVEKSLWRCNDKRCASIEVGIETGSVRLMEKYMKG 369

Query: 309 ---RHTAYEYRQIIDRIRSVRPD--IAISSDFIVGFPGETDDDFRATMDLVDKIG 358
               +   +++ I+ +   +  D  I   +  I+G PGE ++D  AT+ L+D++ 
Sbjct: 370 KMLPYKPEQWQDIVVQSIGILNDNNIYPLATLILGLPGEQEEDIIATITLLDRLK 424


>gi|332704764|ref|ZP_08424852.1| Radical SAM domain protein [Desulfovibrio africanus str. Walvis
           Bay]
 gi|332554913|gb|EGJ51957.1| Radical SAM domain protein [Desulfovibrio africanus str. Walvis
           Bay]
          Length = 490

 Score = 82.3 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 62/356 (17%), Positives = 113/356 (31%), Gaps = 60/356 (16%)

Query: 99  GDLLVVVAGCVAQAEGEEILRRSPIVNVVV--------------GPQTYYRLPELLERAR 144
             +  +  G    A  E +L   P V++VV              G      +P L+ R  
Sbjct: 106 PGVTTIFGGAHVSALRERVLADFPAVDMVVVGEGEETMREIMERGLDDPASIPGLVWRDT 165

Query: 145 FG--------KRVVDTDYSVEDKFERLSIVDGGY-----NRKRGVTAFLTIQEGCDKFCT 191
            G        + ++D D      +E+L      Y     N  R      +   GC   C+
Sbjct: 166 SGAPTFNGRREHLLDLDALPFPAYEKLDGFPHDYTLPIFNYPRAPNTSCSSSRGCPYACS 225

Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFSDL 250
           +C            S   + +  R L D  G+  +                  K    + 
Sbjct: 226 YCDRSVFGRSYRFNSAQYLYEHLRHLRDRFGIRHVNFYDDQFTFH--------KKRVEEF 277

Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
              L   K L            + + LI+             L +++G   +L+  NR+ 
Sbjct: 278 TDMLVA-KPLGMTFNCAVRANHIDEDLIRRLKAAG--CWMTSLGIETGDQALLERQNRKI 334

Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370
              +  + I  ++  R  I +    ++G PGET++    T   V  +        K++P 
Sbjct: 335 DLGDLGEKIKLVK--RHGIRVKGLLMMGLPGETEETIAKTKRYVFSLPVDDLNMTKFTPF 392

Query: 371 LGTP-------GSNMLEQVDENVKAERLLCLQ----------KKLREQQVSFNDAC 409
            G+P        +  L + DE+   +R+ C+           ++L E    F  + 
Sbjct: 393 PGSPIYDEIKAANGQLGEFDED--WQRMDCMHFLFVAKGMTRERLDELHRDFYKSH 446


>gi|169342820|ref|ZP_02863854.1| radical SAM domain protein [Clostridium perfringens C str. JGS1495]
 gi|169299077|gb|EDS81149.1| radical SAM domain protein [Clostridium perfringens C str. JGS1495]
          Length = 501

 Score = 82.3 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 50/296 (16%), Positives = 103/296 (34%), Gaps = 27/296 (9%)

Query: 80  VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL 139
              F+ R+  L         ++ ++  G     EG+E L       V+VG         +
Sbjct: 9   NMEFVNRLAELIKL---VDPNIEILYGGPEVSYEGKEFLENHEGEYVIVGEGEKTFREFV 65

Query: 140 LERARFGK-------------RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGC 186
           L +   GK             +V +     E     L               +     GC
Sbjct: 66  LYKLGEGKLEDIKGLNYKRDGKVFENPKRPEMDMNELVFPYTYEEDINNKIVYYEASRGC 125

Query: 187 DKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT 246
              C +C+     G      + +V  E +  ++ G+  +  + +  N  R   +      
Sbjct: 126 PFKCKYCLSSVMHG-VRFLDVERVKKELKYFMERGLKLVKFVDRTFNCNREYTV------ 178

Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306
             +LL  LSE     R  +  +    +++  I+   +       L + VQ+ ++ +L ++
Sbjct: 179 --ELLKYLSEQDTETRFHFEVAADL-LTEEQIEILNNAPKGRFQLEVGVQTTNNEVLHNI 235

Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           NR  T    ++ + ++ +   ++    D I G PGE  + F+ + + V  I   + 
Sbjct: 236 NRYITYENIKEKVLKV-AAGKNVMQHLDLIAGLPGEDLESFKKSFNDVHAIRPDEI 290


>gi|218440498|ref|YP_002378827.1| hopanoid biosynthesis associated radical SAM protein HpnJ
           [Cyanothece sp. PCC 7424]
 gi|218173226|gb|ACK71959.1| hopanoid biosynthesis associated radical SAM protein HpnJ
           [Cyanothece sp. PCC 7424]
          Length = 478

 Score = 82.3 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 52/313 (16%), Positives = 105/313 (33%), Gaps = 48/313 (15%)

Query: 92  NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE---------- 141
            +   +     +   G       E+ L+ + I++ V   +  Y   ++ E          
Sbjct: 90  EAIKAQNPQTQIGFIGAHVAVLPEQTLKENSIIDFVCRNEFDYTCKDIAEGKPFQEIKGL 149

Query: 142 --RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLT-----------IQEGCDK 188
             R + G      +  +   ++ +  V   Y+R   +  +                GC  
Sbjct: 150 SYRDQQGNIQHTPERELIHDWDSMPSVLPVYDRDLDINKYFIGYLLHPYISFYTGRGCPA 209

Query: 189 FCTFCVVPYTRGIEISR--SLSQV---VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
            C+FC+ P T G    R  S   V   ++EA+ L  + V E                   
Sbjct: 210 KCSFCLWPQTIGGHQYRAKSPEAVAREMEEAKSLFGDKVREYMFDDDTFT---------- 259

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSH--PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
                D   +++  + L RL+ T S     ++    +K   +    +  L +  +SG+ +
Sbjct: 260 ----IDKQRAIAISEHLKRLKLTWSCNARANLDYDTLKQLKN--NGLRLLLVGFESGNQQ 313

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
           IL  + +       ++ ++    +   I +   FI+G P ET +    T+    +I    
Sbjct: 314 ILDGIRKGIKLEVAKKFMENCHKL--GIKVHGTFILGLPDETQETIDETIRFACEINPHT 371

Query: 362 AFSFKYSPRLGTP 374
                 +P  GT 
Sbjct: 372 IQVSIAAPYPGTE 384


>gi|162453743|ref|YP_001616110.1| hypothetical protein sce5467 [Sorangium cellulosum 'So ce 56']
 gi|161164325|emb|CAN95630.1| hypothetical protein sce5467 [Sorangium cellulosum 'So ce 56']
          Length = 467

 Score = 81.9 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 47/284 (16%), Positives = 87/284 (30%), Gaps = 24/284 (8%)

Query: 93  SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDT 152
           +       + VV+ G    A  +E L+     + VV  +     P LL   + G+     
Sbjct: 72  AAAYRRRGVKVVLGGIHPTACPDEALQ---HADAVVVGEAEDAWPALLADVKRGELKPFY 128

Query: 153 DYSVEDKFERLSIVDGGYNRKRGVT-AFLTIQEGCDKFCTFCVVPYTRG-IEISRSLSQV 210
              + D   R       +  K+ +    +    GC   C FC V    G     R   +V
Sbjct: 129 RPELPDLAGRPPPRRDLFTSKKYIPFQVVQTMRGCPYPCEFCSVSTANGTTMRFRPTDEV 188

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270
           + E R L       I     NV   R    +          + + +           S  
Sbjct: 189 LSELRSL----GKLIMFADDNVMIHRAYSKELFTRMIPLKKHWIGQ----------CSLA 234

Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA-YEYRQIIDRIRSVRPDI 329
                  +K   +       L +  +S  +  +K   +R     +Y+  +  +      I
Sbjct: 235 AVKRLENVKLMAESG--CKALFIGFESIDEETVKFTGKRQNRPSQYKDTMAMLHD--HGI 290

Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
           ++   F+ GF  +  + F  T++    +    A     +P   T
Sbjct: 291 SVWGSFVFGFDTDDPEVFDRTVEFGIDMKLTMALYAILTPYPAT 334


>gi|291612821|ref|YP_003522978.1| radical SAM domain protein [Sideroxydans lithotrophicus ES-1]
 gi|291582933|gb|ADE10591.1| Radical SAM domain protein [Sideroxydans lithotrophicus ES-1]
          Length = 446

 Score = 81.9 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 60/295 (20%), Positives = 96/295 (32%), Gaps = 21/295 (7%)

Query: 88  RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147
           R  + +       + VV+ G       +E LR     + VV  +     P+LLE    G+
Sbjct: 72  RAYEIATRFRARGIPVVMGGIHVSYMTDEALR---YADAVVVGEGENIWPKLLEDFERGQ 128

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG-IEISRS 206
                        E L        + +     +    GC   C FC V    G     R+
Sbjct: 129 MQSVYRTCELPDVENLLAPRRDLLKGKYFVETVQTGRGCPINCNFCSVTAFNGSRYRVRN 188

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
           +  V+DE   +       I ++  N+     + +   K  F  +     E  G      T
Sbjct: 189 IDSVIDEINSIKS---KRIFIVDDNIVGQGPRFIRRAKDLFDRMQDCNKEWGGQ-----T 240

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR----RHTAYEYRQIIDRI 322
             +  +  D L  A          L +  +S     + SM++    R     +R  I ++
Sbjct: 241 CLNIVEHDDVLKAAQRSG---CKGLLIGFESLDPATIDSMHKSVNLRPNTRNFRDAIKKL 297

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
                 IAI   FI G  G+  D FR T+D V +           +P  GT    
Sbjct: 298 HD--HGIAIVGCFIFGTEGQNRDAFRRTIDFVLENEIDAVQMSLETPLPGTAFYR 350


>gi|296133713|ref|YP_003640960.1| Radical SAM domain protein [Thermincola sp. JR]
 gi|296032291|gb|ADG83059.1| Radical SAM domain protein [Thermincola potens JR]
          Length = 482

 Score = 81.9 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 67/425 (15%), Positives = 132/425 (31%), Gaps = 72/425 (16%)

Query: 43  RMEDMFFSQGYERVNSMDDADLIVLNTCH-------IREK---------AAEKVYSFLGR 86
            +      +G+         D+I+ +          I E+         A     + +  
Sbjct: 29  YIAGELRKRGF---------DVIIYDAMSKGHDLVRITEEIKKIKPDVVATTAFTASMPA 79

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA--- 143
              L     K    ++ V+ G       EE+L   P ++ VV  +  Y +PELLE     
Sbjct: 80  AAELLYRAKKCHPGVVTVIGGIHPTFMYEEVLNGHPFIDYVVRYEGEYTMPELLEAHFGQ 139

Query: 144 ------------RFGKRVVDTDYSVEDKFERLSIVDG--------GYNRKRGVTAFLTIQ 183
                         G+ VV       +  + L              Y         ++  
Sbjct: 140 RPLAEVKGIAYRLNGQVVVTELRPYIEDLDALVPAWDLLDWEDYTFYVYPGSRLGIISTS 199

Query: 184 EGCDKFCTFCVVPYTRGI-EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG 242
            GC   C FC           +RS+  V  E   L+     EI  +            D 
Sbjct: 200 RGCQHDCGFCSQHKFWQRTWRARSVESVTSEIEHLVKEYGVEIFFISDE-----YPTADR 254

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
           E+     L + + +  G + L  T        + ++  +    ++  ++++ +++ S   
Sbjct: 255 ERWE-KILDWLIDKQLGAMFLIETRVDDIIRDEDIMHKYRQAGII--HIYVGIEATSQEN 311

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           L   N+   A + ++ +D I +    I   + F++G P ET    + T++   +     A
Sbjct: 312 LDIFNKGIVADDSKRALDIIHA--HGIVSETSFVLGIPQETKASIKRTLETAIRYNPDFA 369

Query: 363 FSFKYSPRLG------------TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACV 410
                +P               T        V+  +K  R+    +   +    +     
Sbjct: 370 HFLLLAPWPYADMYKDLKQYIVTTDYARYNLVEPVIKPARMTT-DELFMQILKCYQKFYF 428

Query: 411 GQIIE 415
           G+I E
Sbjct: 429 GKIAE 433


>gi|189347632|ref|YP_001944161.1| magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative
           cyclase [Chlorobium limicola DSM 245]
 gi|189341779|gb|ACD91182.1| magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative
           cyclase [Chlorobium limicola DSM 245]
          Length = 546

 Score = 81.9 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 46/315 (14%), Positives = 96/315 (30%), Gaps = 38/315 (12%)

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           + + +++     K    +  ++ G  +     ++L  +P  + V+  +       L+++ 
Sbjct: 77  IFKAQDIMKIAKKVDPKIRTIMGGIHSTFMYPQVLSEAPETDYVIRGEGEEIAVNLVKQI 136

Query: 144 RFG-------------------KRVVDTDYSVEDKFERLSIVDGGYNRKRGVT------- 177
             G                   K      + V +  + L+     Y+  + +        
Sbjct: 137 AAGTDKENRADITGIAYIDNDGKVFATPAHPVIEDLDTLTPDWSLYDWNKYIYTPLNCRL 196

Query: 178 AFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWR 236
           A      GC   CTFC          +RS    VDE   L+    V    L  +     +
Sbjct: 197 AVPNFARGCPFTCTFCSQWQFWRRYRARSPKHFVDEIEILVKKYNVGFFILADEEPTINK 256

Query: 237 GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQ 296
            K +       +     +    G+     T        + L+       ++  ++ L  +
Sbjct: 257 QKFV-------ALCQELIDRKLGVTWGINTRVTDIMRDEDLLPFFRKAGLV--HVSLGTE 307

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
           + S   L    +  T  E +  I  ++     I   + F++G   ET +    T  L   
Sbjct: 308 AASQMNLNRFRKETTIDENKLAIKLLQKN--GIVAEAQFVMGLEHETPETIEETYQLCKD 365

Query: 357 IGYAQAFSFKYSPRL 371
                A    Y+P  
Sbjct: 366 WDPDMANWTIYTPWP 380


>gi|302336845|ref|YP_003802051.1| radical SAM protein [Spirochaeta smaragdinae DSM 11293]
 gi|301634030|gb|ADK79457.1| Radical SAM domain protein [Spirochaeta smaragdinae DSM 11293]
          Length = 533

 Score = 81.9 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 48/289 (16%), Positives = 96/289 (33%), Gaps = 19/289 (6%)

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIV-NVVVGPQTYYRLPELLERARFGK 147
            +     KE  DL +   G    A+   +    P   ++ +  +    + + L+    G+
Sbjct: 74  EIARQIKKELPDLPIFAGGPEVTADWHRLGETYPGCFDLFLPGEGEGSILQGLDMLLAGR 133

Query: 148 RVVDTDYSVEDKFERLSIV--DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
                 +        L     DG  +          +  GC   C FC            
Sbjct: 134 PSTSVLFPQSVDLTVLPSPYLDGMLDPAAYTGLLWELSRGCPFRCHFCFESKGSEQVRYF 193

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           S+ ++  E      +GV E+ +L    N          +     LL  + E+     + Y
Sbjct: 194 SMERITRELELFARSGVRELFILDPTFNH--------NRTRAKKLLRLMQEVAPD--IHY 243

Query: 266 TTSHPRDM-SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
                 +     L +       L   L + +QS   ++L+++NR     ++R+ +  +  
Sbjct: 244 NIEVRSEFLDQELAELFS---CLSCSLQIGLQSADPKVLRNINRSIKQDDFRRKVLFLHE 300

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
              ++    D I G PG++ + F A++D    +       F  +   GT
Sbjct: 301 A--EVVYGFDLIYGLPGDSLEGFLASIDFAFSMVPNHIDIFPLAVLPGT 347


>gi|289191750|ref|YP_003457691.1| Radical SAM domain protein [Methanocaldococcus sp. FS406-22]
 gi|288938200|gb|ADC68955.1| Radical SAM domain protein [Methanocaldococcus sp. FS406-22]
          Length = 511

 Score = 81.9 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 63/331 (19%), Positives = 128/331 (38%), Gaps = 42/331 (12%)

Query: 176 VTAFLTIQEGCDK----FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQN 231
           + A +    GC +     C+FC  P   G+   R    +VDE + L D G+    +  Q 
Sbjct: 183 IIAEIETYRGCSRALSGGCSFCTEPRRFGLPTFRDERDIVDEIKALYDEGIKYFRIGRQP 242

Query: 232 VNAWRGKGLDGEKC--------TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGD 283
                 K +D EK             L   +  +     L    ++P  ++    ++   
Sbjct: 243 CMLSY-KSIDSEKEEVPKPNVEAIEKLFKGIRNVSNPKVLHIDNANPAVIARHENESREV 301

Query: 284 LDVLMPY------LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV--------RPDI 329
             +L+ Y          V+S  ++++K+ N   T  +  + ++ +  +         P +
Sbjct: 302 AKILVKYCTSGNVAAFGVESFDEKVIKANNLLTTPEDVLKAVEILNEIGGQRGETGLPYL 361

Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF------KYSPRLGTPGSNMLEQVD 383
               + + G  GE  + F    + + +I Y + F        +  P  GT  +  L+ + 
Sbjct: 362 LPGINLLFGLKGERKETFAINFEYLKEI-YDRGFMIRRINIRQVVPFFGTDIT--LKDIK 418

Query: 384 ENVKAERL-LCLQKKLREQQVSFNDACV---GQIIEVLIEKHGKEKGKLVGR--SPWLQS 437
           +  K ++L L  ++K+RE+  +     V   G I++ +  +  +      GR    +   
Sbjct: 419 KAEKRKKLFLWFKEKVREEIDNKMLKRVVPKGTILKDVFIEVKERDNLYFGRQFGSYPIL 478

Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           V +  KN  IG+ + V I D    ++ G++V
Sbjct: 479 VGIVDKNLKIGEFVDVEIVDYGRRSITGKVV 509


>gi|126460686|ref|YP_001056964.1| radical SAM domain-containing protein [Pyrobaculum calidifontis JCM
           11548]
 gi|126250407|gb|ABO09498.1| Radical SAM domain protein [Pyrobaculum calidifontis JCM 11548]
          Length = 530

 Score = 81.9 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 57/308 (18%), Positives = 110/308 (35%), Gaps = 32/308 (10%)

Query: 80  VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAE--GEEILRRSPIVNVVVGPQTYYRLP 137
              F+ R+           G L V+V G  A       E++ R  I  +  G      + 
Sbjct: 131 FKRFMERLAPHIAKAKASNG-LKVIVGGPAAWQWLYFPELVERWGIDTIFDGEGEKL-VV 188

Query: 138 ELLERARFGKRVVDTDYS-VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
           EL++ A  GK +    Y  V +  +   I +  Y    G+   + I  GC + C FC V 
Sbjct: 189 ELVKNALEGKPLPRYVYVGVSEAPDVSEISEIKYPSINGL---VEIGRGCPRGCAFCSVT 245

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256
                     L ++  E R   + GV +  L    V  +   G++       +    L +
Sbjct: 246 L--RAMRWYPLEKIEKELRINAEAGVVDGILHSDEVPLYGSSGVEPRPDKLIE----LHK 299

Query: 257 IKGLVRLRYTTSHPRDMS------------DCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304
           +      +   SH   ++              L +   D         + +++GS R+ +
Sbjct: 300 LAKRYYRKVGWSHSTFVAIYHGEKKMGKLFTKLSEIILDEHQDWWGAQIGLETGSIRLAR 359

Query: 305 SMN----RRHTAYEYRQIIDRIRSVRPDIA--ISSDFIVGFPGETDDDFRATMDLVDKIG 358
            +       +   ++ +I+    ++  +I    +   IVG P E  +D   T++LV+K+ 
Sbjct: 360 RIMPGKAAPYKIEQWHEIVVEAAAIMHEIRLIPAITLIVGLPEEEPEDVLETIELVEKLR 419

Query: 359 YAQAFSFK 366
             ++    
Sbjct: 420 PYRSLIVP 427


>gi|91977933|ref|YP_570592.1| radical SAM family protein [Rhodopseudomonas palustris BisB5]
 gi|91684389|gb|ABE40691.1| Radical SAM [Rhodopseudomonas palustris BisB5]
          Length = 592

 Score = 81.9 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 50/278 (17%), Positives = 99/278 (35%), Gaps = 20/278 (7%)

Query: 105 VAGCVAQAEGEEI---LRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFE 161
           V+GC++  +G+ +     R   V++  G +   R+  LL+ A  G      +Y  +    
Sbjct: 128 VSGCLSMLDGQAVDLDACRDLGVSIFAG-EAEGRIDRLLQDAANGSLQPLYNYLDDLPGI 186

Query: 162 RLSIVDG----GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI-EISRSLSQVVDEARK 216
             + V         R  G++       GC   C+FC +   +G     R+   V    R 
Sbjct: 187 EGTPVPFLPLANVKRTLGLSTSFDAGRGCPYQCSFCTIINVQGRKSRYRTPDDVEALVRA 246

Query: 217 LIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDC 276
               GV +  +   N    +      ++  +      L E +G+                
Sbjct: 247 NWKQGVSKFFITDDNFARNKDWEAILDRLIW------LKEEQGIPLGLLIQVDTL-CHKI 299

Query: 277 LIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA-YEYRQIIDRIRSVRPDIAISSDF 335
                      +  + L ++S +   L   N+R     EYR ++   ++    I   + +
Sbjct: 300 PNFIEKAKRAGVTRVFLGLESINPETLLLANKRQNKITEYRAMLLAWKAQ--GIITLAGY 357

Query: 336 IVGFPGETDDDFRATMDLVD-KIGYAQAFSFKYSPRLG 372
           I+GFP +T +   A +D++  ++       F  +P  G
Sbjct: 358 ILGFPADTPESILADIDIIKRELPIDILEFFCLTPLPG 395


>gi|21674322|ref|NP_662387.1| BchE/P-methylase family protein [Chlorobium tepidum TLS]
 gi|21647496|gb|AAM72729.1| Bche/P-methylase family protein [Chlorobium tepidum TLS]
          Length = 434

 Score = 81.9 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 51/275 (18%), Positives = 78/275 (28%), Gaps = 21/275 (7%)

Query: 103 VVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFER 162
           VV+ G       E         +V+V  +      E+LE  R G    +           
Sbjct: 75  VVLGGPYVSIFPERCREHG---DVLVIGEADDLWREVLEDLRRGALKPEYRQGAFPDLSA 131

Query: 163 LSIVDGGYNRKRGV--TAFLTIQEGCDKFCTFCVVPYTRG-IEISRSLSQVVDEARKLID 219
              VD    +      T  +    GC   C FC V    G     R + +VV E    + 
Sbjct: 132 PRPVDKSALQINRYFTTNVVQTTRGCPYSCDFCSVHVMNGHKLRHRPVGEVVREVEAFLR 191

Query: 220 NGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIK 279
                   L   +NA        E          +      V    T          L+ 
Sbjct: 192 EDKRIFFFLDDTINAD-------EAYALELFSKLIPFNIKWVGQATTLLGEN---PKLLD 241

Query: 280 AHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT-AYEYRQIIDRIRSVRPDIAISSDFIVG 338
                      L + ++S +D   ++ ++ H  A    + I  IR     I +   FI G
Sbjct: 242 IFSRSG--CGALLVGIESLADESNRAHHKFHNPAERQVRCIQEIRKA--GICVYGSFIYG 297

Query: 339 FPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
             G+T          +D+ G          P  GT
Sbjct: 298 LDGDTLAMPERIDAFIDEAGVDVPGINLLRPIPGT 332


>gi|260890897|ref|ZP_05902160.1| radical SAM protein [Leptotrichia hofstadii F0254]
 gi|260859450|gb|EEX73950.1| radical SAM protein [Leptotrichia hofstadii F0254]
          Length = 440

 Score = 81.9 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 64/330 (19%), Positives = 123/330 (37%), Gaps = 34/330 (10%)

Query: 54  ERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAE 113
           E++    DAD++V+    I   +           R  K +R  +     V++ G      
Sbjct: 51  EKIPLELDADIVVMT--SITGTSE----------RVYKYARYFKSKGKKVILGGPHPTLC 98

Query: 114 GEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRK 173
            EE ++    V  V+G ++ +   E++E AR   R+       E+  E L +      +K
Sbjct: 99  PEEAIQHCDSV--VIG-RSEWLFTEIMEDAR-NDRLKKFYVQKENSLENLKLPKRELLKK 154

Query: 174 RGVTAFLTI--QEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQN 231
               +  +I   +GC   C+FCV        + R +++++ E          E+  +  N
Sbjct: 155 ERYVSINSIEATKGCSFDCSFCVGKALYPKLLKRPINEIIAEIETFKK---KEVLFIDLN 211

Query: 232 VNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL 291
           + A      +  K  F +L                TS+       +I+           L
Sbjct: 212 LIA----DRNYAKKLFIELTPL-----KKWWFGLATSNLVHDD-EMIRLMAKSG--CKGL 259

Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351
            +  ++ S   L++MN+         ++ + +    DIA++  F  G  G+  D F+ T+
Sbjct: 260 LIGFEAVSKESLRAMNKGVNVMADYHLLMK-KLHHYDIAVNGTFTFGADGDDKDIFKRTV 318

Query: 352 DLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           + V K+          +P   T   N LE+
Sbjct: 319 EEVIKMKVDLPRYSILTPFPKTKLYNDLEK 348


>gi|241761812|ref|ZP_04759898.1| hopanoid biosynthesis associated radical SAM protein HpnJ
           [Zymomonas mobilis subsp. mobilis ATCC 10988]
 gi|260752571|ref|YP_003225464.1| hopanoid biosynthesis associated radical SAM protein HpnJ
           [Zymomonas mobilis subsp. mobilis NCIMB 11163]
 gi|241373726|gb|EER63286.1| hopanoid biosynthesis associated radical SAM protein HpnJ
           [Zymomonas mobilis subsp. mobilis ATCC 10988]
 gi|258551934|gb|ACV74880.1| hopanoid biosynthesis associated radical SAM protein HpnJ
           [Zymomonas mobilis subsp. mobilis NCIMB 11163]
          Length = 476

 Score = 81.9 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 52/308 (16%), Positives = 104/308 (33%), Gaps = 40/308 (12%)

Query: 92  NSRIKEGGDLLVVVAGC-VAQAEGEEILRRSPIVNVVVGPQ---------TYYRLPELLE 141
            +  K    + +   G  VA    + +     IV+ V   +               E+L 
Sbjct: 90  AALKKVNPAMKIGFIGAKVAVEADKSLKDAKGIVDFVARNEFDFTIKDVADGKDWSEILG 149

Query: 142 RA---RFGKRVVDTDYSVEDKFERLSIVDGGYNRK-----------RGVTAFLTIQEGCD 187
            +     G+ V + D  +    + L  V   Y R            +     +    GC 
Sbjct: 150 LSYINDKGEIVHNADRPLLQNMDELPFVTPIYKRDLEIEKYFIGYLKHPYISIYTGRGCK 209

Query: 188 KFCTFCVVPYTRG--IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
             C+FC+ P T G     +RS+  V++E +  +         + +          D  + 
Sbjct: 210 SHCSFCLWPQTVGGHKYRTRSVEHVIEEIKYAL----KTFPQVKEFFFDDDTFTDDRPRA 265

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
                  +++   G + + ++ +   ++    +K   D    +  L +  +SG+ +IL +
Sbjct: 266 ------EAIARELGKLGVTWSCNAKANVPYETLKVLKD--NGLRLLLVGYESGNQQILHN 317

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           + +        +       +   IAI   FI+G PGET +    T+    +I        
Sbjct: 318 IKKGMRVETAEKFTRDCHDL--GIAIHGTFILGLPGETRETIEQTIKWACEINPHTIQVS 375

Query: 366 KYSPRLGT 373
             +P  GT
Sbjct: 376 LAAPYPGT 383


>gi|218780058|ref|YP_002431376.1| radical SAM domain protein [Desulfatibacillum alkenivorans AK-01]
 gi|218761442|gb|ACL03908.1| Radical SAM domain protein [Desulfatibacillum alkenivorans AK-01]
          Length = 468

 Score = 81.9 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 67/371 (18%), Positives = 113/371 (30%), Gaps = 53/371 (14%)

Query: 48  FFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAG 107
              +G+ R       +++ ++ C        +    L     +K          LVV+ G
Sbjct: 34  LPDRGWTRKLKAFSPEMVAMSVCT------GEHPGMLETASWVKK---FINPAPLVVMGG 84

Query: 108 CVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTD---YSVEDKFERLS 164
                  E I    P V+ +   +     P            VD D      E +  +  
Sbjct: 85  PHPTFFPEVI--EHPCVDAICRGEGENAFPAFAASINGKGPAVDVDGFWVKREGRIYKNP 142

Query: 165 IVD--------GGYNRKRGVTAFLTIQ----------EGCDKFCTFC-------VVPYTR 199
             D           +RK     +  IQ           GC   C++C       ++    
Sbjct: 143 PADLVEDLDQIPIPSRKNLFKDYPFIQKLPFRKMITGRGCPYNCSYCYNRALKDILKGKG 202

Query: 200 GIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258
                RS++ VVDEA  L    G   I              L+     FSD   S  +I 
Sbjct: 203 RYLRRRSVTHVVDEAAYLKQTFGTKFIDFNDDIFTVDPDWILE-----FSDQYASRVKIP 257

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
               +R    + +        A          +   ++SG +    ++  + T  +  + 
Sbjct: 258 FCCNVRVDRLNEQG-------AKALARAGCRVVKFGLESGDEHFRHTVLNKSTTDDDIRR 310

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
             +I      I I +  ++G PGET      T+ L  +I    A+     P  GT  +  
Sbjct: 311 CAKILHA-AGIKIQTYNMLGLPGETLQQAMKTVRLNQEIKPYYAWCSLAQPYPGTAMAKQ 369

Query: 379 LEQVDENVKAE 389
             Q  E VK +
Sbjct: 370 FAQAPEQVKDQ 380


>gi|78222899|ref|YP_384646.1| radical SAM family protein [Geobacter metallireducens GS-15]
 gi|78194154|gb|ABB31921.1| Radical SAM [Geobacter metallireducens GS-15]
          Length = 428

 Score = 81.9 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 61/334 (18%), Positives = 107/334 (32%), Gaps = 38/334 (11%)

Query: 47  MFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVA 106
               +  E ++   DADL+ +    +  +A +            K           VV+ 
Sbjct: 42  ALCDENIEPLDLNSDADLVAIT--AMTPQAPQAYRIAAAFRARGKR----------VVMG 89

Query: 107 GCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIV 166
           G  A    EE L+    V+ VV  +     P+LL     G+       +     E + + 
Sbjct: 90  GFHASNLPEEALQ---HVDAVVVGEGEVVWPQLLADLERGELQRIYRAATALAMEAIPVA 146

Query: 167 DGGYNRKRG--VTAFLTIQEGCDKFCTFCVVPYTRGI-EISRSLSQVVDEARKLIDNGVC 223
                + +    T  L    GC   C FC V    G     R +  V+ E   L      
Sbjct: 147 RRELFQGKRYLFTNTLQTTRGCPFDCEFCSVTAFYGRRYRKRPVDNVLAELELLRRRNS- 205

Query: 224 EITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL--VRLRYTTSHPRDMSDCLIKAH 281
               +  N+ A              D  Y+LS   G+  +  ++ +  P D +       
Sbjct: 206 FAFFVDDNLVA--------------DRTYALSLFAGMKGMGFKWLSHAPIDFAHDREFLR 251

Query: 282 GDLDVLMPYLHLPVQSGSDRILKSMNR-RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFP 340
              +     + +  +S +   L +M +  +TA  Y +     R     I I   F++G  
Sbjct: 252 AAGEAGCVGMFVGFESLNQDALAAMGKVTNTARSYLEDAQAFRDN--GIGILGSFVLGCD 309

Query: 341 GETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
            +T   F   +   ++     A     +P  GT 
Sbjct: 310 NDTPAVFEGLLRFCEEARLEAAIFPILTPYPGTE 343


>gi|283856379|ref|YP_162708.2| hopanoid biosynthesis associated radical SAM protein HpnJ
           [Zymomonas mobilis subsp. mobilis ZM4]
 gi|283775378|gb|AAV89597.2| hopanoid biosynthesis associated radical SAM protein HpnJ
           [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 476

 Score = 81.9 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 52/308 (16%), Positives = 104/308 (33%), Gaps = 40/308 (12%)

Query: 92  NSRIKEGGDLLVVVAGC-VAQAEGEEILRRSPIVNVVVGPQ---------TYYRLPELLE 141
            +  K    + +   G  VA    + +     IV+ V   +               E+L 
Sbjct: 90  AALKKVNPAMKIGFIGAKVAVEADKSLKDAKGIVDFVARNEFDFTIKDVADGKDWSEILG 149

Query: 142 RA---RFGKRVVDTDYSVEDKFERLSIVDGGYNRK-----------RGVTAFLTIQEGCD 187
            +     G+ V + D  +    + L  V   Y R            +     +    GC 
Sbjct: 150 LSYINDKGEIVHNADRPLLQNMDELPFVTPIYKRDLEIEKYFIGYLKHPYISIYTGRGCK 209

Query: 188 KFCTFCVVPYTRG--IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
             C+FC+ P T G     +RS+  V++E +  +         + +          D  + 
Sbjct: 210 SHCSFCLWPQTVGGHKYRTRSVEHVIEEIKYAL----KTFPQVKEFFFDDDTFTDDRPRA 265

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
                  +++   G + + ++ +   ++    +K   D    +  L +  +SG+ +IL +
Sbjct: 266 ------EAIARELGKLGVTWSCNAKANVPYETLKVLKD--NGLRLLLVGYESGNQQILHN 317

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           + +        +       +   IAI   FI+G PGET +    T+    +I        
Sbjct: 318 IKKGMRVETAEKFTRDCHDL--GIAIHGTFILGLPGETRETIEQTIKWACEINPHTIQVS 375

Query: 366 KYSPRLGT 373
             +P  GT
Sbjct: 376 LAAPYPGT 383


>gi|209515280|ref|ZP_03264147.1| Tryptophanase [Burkholderia sp. H160]
 gi|209504261|gb|EEA04250.1| Tryptophanase [Burkholderia sp. H160]
          Length = 1008

 Score = 81.9 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 58/323 (17%), Positives = 109/323 (33%), Gaps = 36/323 (11%)

Query: 79  KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPE 138
             YSFL RIR++    ++    + VV+ G       E++L      +  +  +  +  P+
Sbjct: 77  SGYSFLDRIRDIVT-MLRRARAVPVVMGGAGYSVMPEKLLAYL-GADFGIVREGEFSFPD 134

Query: 139 LLERARFGKRVVDTDYSVEDK---------------------FERLSIVDGGYNRKRGVT 177
           LL     G+        V                          +  +V+  +   +G  
Sbjct: 135 LLTCLEEGRSFTHIPGVVYRDAAGVQATPLAPNACGPLAKIGPHKRELVNNEHYFAKGGQ 194

Query: 178 AFLTIQEGCDKFCTFCVVPYTRGIEIS-RSLSQVVDEARKLIDNGVCEITLLGQNVNAWR 236
             +  + GC++ C +CV P  +G  +  R    VV E   L++ GV    +     N   
Sbjct: 195 IGIETKRGCNRSCIYCVEPLIKGRSVRMREPDDVVAEMASLVERGVNVFHINDSEFNLSV 254

Query: 237 GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQ 296
                      +     +          Y    PR   D L  A          ++  V 
Sbjct: 255 AHP-------LALCAAIIRHGLAGKIQWYAYGMPRPFPDELAAAMKAAG--CVGMNFGVD 305

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
           S S+ +LK + R  +A +    +    + R  +    + + G PGET +  R T++ + +
Sbjct: 306 SASETMLKILRRTFSAPDIEHAVKT--AKRHGLEHIIELLFGAPGETQETARETIEFIKR 363

Query: 357 IGYAQAF-SFKYSPRLGTPGSNM 378
           +   +   +       GT    M
Sbjct: 364 VDPERVSVTVGLRIFPGTELEQM 386


>gi|110598248|ref|ZP_01386524.1| Magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative
           cyclase [Chlorobium ferrooxidans DSM 13031]
 gi|110340163|gb|EAT58662.1| Magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative
           cyclase [Chlorobium ferrooxidans DSM 13031]
          Length = 546

 Score = 81.9 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 55/364 (15%), Positives = 109/364 (29%), Gaps = 50/364 (13%)

Query: 35  QMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSR 94
           Q+   D   M D       E +   +  D+++          A  +   + + +++    
Sbjct: 40  QVRFVD--AMADNLEDDQIEEIIRKNKPDVVM----------ATNITPSIFKAQDIMKVA 87

Query: 95  IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA----------- 143
            K    +  ++ G  +     ++L  +P  + VV  +       L+              
Sbjct: 88  KKVDPKIRTIMGGIHSTFMYPQVLSEAPETDYVVRGEGEEVTVNLIREIAAGTDRENRAN 147

Query: 144 --------RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT-------AFLTIQEGCDK 188
                     GK      + V +  + L+     Y+  + +        A      GC  
Sbjct: 148 ITGIAYLDDEGKVFATAAHPVIEDLDTLTPDWSLYDWDKYIYTPLNCRLAVPNFARGCPF 207

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTF 247
            CTFC          +RS    VDE   L+    V    L  +     + K +       
Sbjct: 208 TCTFCSQWQFWRRYRARSPKLFVDEIEVLVKKYNVGFFILADEEPTINKQKFV----SLC 263

Query: 248 SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307
            +L+     +   +  R T          L+       ++  ++ L  ++ S   L    
Sbjct: 264 QELIDRKLNVSWGINTRVTDIMR---DADLLPFFRKAGLV--HVSLGTEAASQMNLNRFR 318

Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           +  T  E +  I  ++     I   + F++G   ET +    T  L        A    Y
Sbjct: 319 KETTIEENKYAIKLLQKN--GIVAEAQFVMGLEHETPETIEETYQLCKDWDPDMANWTIY 376

Query: 368 SPRL 371
           +P  
Sbjct: 377 TPWP 380


>gi|115526451|ref|YP_783362.1| radical SAM domain-containing protein [Rhodopseudomonas palustris
           BisA53]
 gi|115520398|gb|ABJ08382.1| Radical SAM domain protein [Rhodopseudomonas palustris BisA53]
          Length = 591

 Score = 81.9 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 49/285 (17%), Positives = 97/285 (34%), Gaps = 34/285 (11%)

Query: 105 VAGCVAQAEGEEI---LRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFE 161
           V+GC+A  +G+ I     R   + +  G         LL+ A    + V          E
Sbjct: 127 VSGCLAMLDGKAIGLDACREMGIAMFAGEAEGRFDSVLLDAAAGQLQPVYNYLDDLPGIE 186

Query: 162 RLSIVDGGY---NRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI-EISRSLSQVVDEARKL 217
            +           R  G++       GC   C+FC +   +G     R+   V    R+ 
Sbjct: 187 GVPTPYLPLQTIKRTLGLSTSFDAGRGCPYQCSFCTIINVQGRKSRYRTPDDVEAMVRQN 246

Query: 218 IDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCL 277
              G+ +  +   N    +                  + +  L+ LR T + P      +
Sbjct: 247 WAQGISKYFITDDNFARNKDWE---------------AILDRLIWLRETHNIPLGFLIQV 291

Query: 278 IKAHGDLDVLM--------PYLHLPVQSGSDRILKSMNRRHTA-YEYRQIIDRIRSVRPD 328
                 +   M          + + +++ +   L + N+R     EYR ++   +     
Sbjct: 292 DTLCHKIPNFMAKAKRAGVTRVFIGLENINPANLLTANKRQNKITEYRAMLLAWKDQ--G 349

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVD-KIGYAQAFSFKYSPRLG 372
           I   + +I+GFP +T +  R  +D++  ++       F  +P  G
Sbjct: 350 IITLAGYILGFPADTPESIRNDIDIIKRELPIDVMEFFCLTPLPG 394


>gi|328952365|ref|YP_004369699.1| Radical SAM domain protein [Desulfobacca acetoxidans DSM 11109]
 gi|328452689|gb|AEB08518.1| Radical SAM domain protein [Desulfobacca acetoxidans DSM 11109]
          Length = 624

 Score = 81.5 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 53/291 (18%), Positives = 94/291 (32%), Gaps = 34/291 (11%)

Query: 103 VVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKF-- 160
           VV+ G       EE L  +  V    G +    L   L      + + +  Y        
Sbjct: 93  VVLGGPHPSFTPEESLEHADFVVCGEGDEALPELIAALNGEHGFETIGNLCYHDNGTIRK 152

Query: 161 ----------ERLSIVDGG--YNRKRGVTAFLTI--QEGCDKFCTFCVVPYTRGI-EISR 205
                     + L I D    +  + G  A ++I    GC   C FC V    G      
Sbjct: 153 NPWRPFFQDLDSLPIPDYSLIHGWRSGKQAVISIATSRGCPFGCRFCSVILLFGRQFRYN 212

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           S+ +++ E ++        I     N  A        ++    +LL  +  I   +++ +
Sbjct: 213 SVDRIMAEIKQNGTQ-ANHIFFCDDNFTA--------DRNRCKELLERI--IAENLKIEW 261

Query: 266 TTSHPRDM--SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           +     +      L+         + Y  + ++S +   LKS  +  T  + R  +D   
Sbjct: 262 SAQVRVEAAKDPELLSLMARSGCFLVY--IGLESINPATLKSYKKAQTVEDIRYCVDTFH 319

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
                I +   FI G   +T    R T+    +I          +P  GTP
Sbjct: 320 D--HGIKVHGMFIFGSEEDTIQVLRDTVGFSQEIDVDSLQYLILTPIPGTP 368


>gi|302823699|ref|XP_002993499.1| hypothetical protein SELMODRAFT_137168 [Selaginella moellendorffii]
 gi|300138675|gb|EFJ05435.1| hypothetical protein SELMODRAFT_137168 [Selaginella moellendorffii]
          Length = 98

 Score = 81.5 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 1/78 (1%)

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +  + P I I++D I GFPGET +DF   M+L+ +  + Q    ++ PR GTP + M ++
Sbjct: 1   LEKLVPKIHIATDIICGFPGETSEDFDRIMELIREYTFPQVHISQFYPRPGTPAALM-KR 59

Query: 382 VDENVKAERLLCLQKKLR 399
           V      +R   L     
Sbjct: 60  VPTLEVKKRSRSLTSLFE 77


>gi|256810114|ref|YP_003127483.1| Radical SAM domain protein [Methanocaldococcus fervens AG86]
 gi|256793314|gb|ACV23983.1| Radical SAM domain protein [Methanocaldococcus fervens AG86]
          Length = 511

 Score = 81.5 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 72/387 (18%), Positives = 145/387 (37%), Gaps = 49/387 (12%)

Query: 125 NVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFE---RLSIVDGGYNRKRGVTAFLT 181
           +VV        L +LL      K   +   S E+  E   R   V   +     + A + 
Sbjct: 129 DVVAEGDLEAVLNDLLREGSIEKIDFNRYRSYEELKEFAIRGVKVVKKHPNYPYIIAEIE 188

Query: 182 IQEGCDK----FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG 237
              GC +     C+FC  P   G+   R    +V+E + L D G+    +  Q       
Sbjct: 189 TYRGCSRALTGGCSFCTEPRRLGLPKFRDEKDIVEEIKALYDEGIRYFRIGRQPCIFSY- 247

Query: 238 KGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDC------LIKAHGDLDVLMPYL 291
           K ++ EK        ++  I+ L +  +  S+P+ +         + +   +   +   L
Sbjct: 248 KSVESEKEEVPKP--NVEAIEKLFKGIWNVSNPKVLHIDNANPAVIARHEAESREVAKIL 305

Query: 292 ----------HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV--------RPDIAISS 333
                        V+S  ++++K+ N   T  +  + ++ +  +         P +    
Sbjct: 306 VKYCTSGNVAAFGVESFDEKVIKANNLLTTPEDVLKAVEILNEIGGKRGETGLPYLLPGI 365

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSF------KYSPRLGTPGSNMLEQVDENVK 387
           + + G  GE  + F    + + +I Y + F        +  P  GT  +  L+ + +  K
Sbjct: 366 NLLFGLKGERKETFAINFEYLKEI-YDRGFMLRRINIRQVVPFFGTDIT--LKDIKKAEK 422

Query: 388 AERL-LCLQKKLREQQVSFNDACV---GQIIEVLIEKHGKEKGKLVGR--SPWLQSVVLN 441
            ++L L  ++K+RE+  +     V   G I++ +  +  +      GR    +   V + 
Sbjct: 423 RKKLFLWFKEKVREEIDNKMLKRVVPKGTILKDVFVEVKERDNLYFGRQFGTYPILVGIV 482

Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
            KN  IG+ + V I D    ++ G +V
Sbjct: 483 DKNLKIGEFVDVEIVDYGRRSITGRVV 509


>gi|91201311|emb|CAJ74371.1| hypothetical protein kuste3608 [Candidatus Kuenenia
           stuttgartiensis]
          Length = 486

 Score = 81.5 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 51/301 (16%), Positives = 97/301 (32%), Gaps = 22/301 (7%)

Query: 88  RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147
           R  K +   +   + V++ G  A    EE    S  V+ V   +     P +++    GK
Sbjct: 79  RAYKIATACKRKGMTVIMGGIHASVMPEE---ASKYVDTVFIGEAEEVWPRVIKDFEAGK 135

Query: 148 -RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTI--QEGCDKFCTFCVVPYTRGI-EI 203
            + V           +    D  + RK+    F +I   +GC  +C FC VP  +G    
Sbjct: 136 LKKVYDGGLPPLNLMKRVFPDREFLRKKYNYKFSSIVTTKGCPNYCDFCSVPTFQGRKFR 195

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
            R    V++   +L       + L   N     G G    +   +     +        L
Sbjct: 196 ERPYEDVLE---ELAATDYKGLMLAEDNF---YGHGKRSNERARNLFKGMVERNLQKDWL 249

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT----AYEYRQII 319
            +T  +        +            + + ++S ++ +L+ MN++         Y   I
Sbjct: 250 GFTALNISQ-DKETLDYMAKSG--CFGMLMGIESTNETVLEKMNKQVNLKLGTESYYDCI 306

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            +I      +      + G  G+  D F+   D + +            P   T     L
Sbjct: 307 QKIHDA--GLVTWGSVVFGADGDGKDSFKRMTDFILENNIDILTFGINCPFPKTQLYKRL 364

Query: 380 E 380
           +
Sbjct: 365 D 365


>gi|296132645|ref|YP_003639892.1| cobalamin B12-binding domain protein [Thermincola sp. JR]
 gi|296031223|gb|ADG81991.1| cobalamin B12-binding domain protein [Thermincola potens JR]
          Length = 1005

 Score = 81.5 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 67/397 (16%), Positives = 118/397 (29%), Gaps = 74/397 (18%)

Query: 35  QMNVYDSLRMEDMFFSQGYERV--------NSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
            +N+     +       G+E          + + D +  V         A       +G 
Sbjct: 25  PLNLV---YLAGSLRQAGFEPAIYDVMTLRHDLQDIEKYV--------AANNPDAVLIGA 73

Query: 87  IRNLKNS-------RIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL 139
                N+         K    ++ V+ G  A    EEILR +  V+ VV  +      EL
Sbjct: 74  YTASINAALDTLAVVKKVNPSVITVLGGVHASFCFEEILRNNRAVDFVVRGEGEITAVEL 133

Query: 140 LERARFG---------------KRVVDTDYSVEDKFERLSIVD-------GGYNRKRGVT 177
                 G               + V+  +  + D  + L             Y       
Sbjct: 134 FRSLNEGTDLTLVQGLAFLQGDRLVITEERPLIDDLDSLLPAWDLIDWNNYYYKITNRRL 193

Query: 178 AFLTIQEGCDKFCTFCVVP-YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR 236
             ++   GC   C+FC    + RG    RS    V E   L       + +L      + 
Sbjct: 194 GLMSSSRGCPHRCSFCSQHLFWRGTYRERSPQNFVSEVEVLYKQYGVRMIMLADEYTTY- 252

Query: 237 GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMP------- 289
                  +  +  +L  L  I+  + L ++     +          D D+L         
Sbjct: 253 ------NRRRWEQILDLL--IEKKMDLHFSMETRVE------DVLRDRDILWKYRQAGVM 298

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           ++++ V+S     L   N+   A   R+ I  +      I     FI G   ET D  + 
Sbjct: 299 HMYIGVESVFQSSLDRYNKGLEAANSREAIKLLDEA--GIITECSFISGNLEETPDTMQQ 356

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQVDEN 385
           T+    +     A     +P   TP    +   + E+
Sbjct: 357 TLQKALEFNPDLAHFLLITPWPYTPLYEELKPHIIEH 393


>gi|257125085|ref|YP_003163199.1| radical SAM protein [Leptotrichia buccalis C-1013-b]
 gi|257049024|gb|ACV38208.1| Radical SAM domain protein [Leptotrichia buccalis C-1013-b]
          Length = 440

 Score = 81.5 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 63/330 (19%), Positives = 122/330 (36%), Gaps = 34/330 (10%)

Query: 54  ERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAE 113
           E++    DAD++V+    I   +           R  K +R  +     V++ G      
Sbjct: 51  EKIPLELDADIVVMT--SITGTSE----------RVYKYARYFKSKGKKVILGGPHPTLC 98

Query: 114 GEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRK 173
            EE ++    V  V+G ++ +   E++E AR    +       E+  E L +      +K
Sbjct: 99  PEEAIQHCDSV--VIG-RSEWLFTEIMEDAR-NNSLKKFYVQKENSLENLKLPKRELLKK 154

Query: 174 RGVTAFLTI--QEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQN 231
               +  +I   +GC   C+FCV        + R +++++ E          E+  +  N
Sbjct: 155 ERYVSINSIEATKGCSFDCSFCVGKALYPKLLKRPINEIIAEIETFKK---KEVLFIDLN 211

Query: 232 VNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL 291
           + A      +  K  F +L      I          +      D +I+           L
Sbjct: 212 LIA----DRNYAKKLFIEL------IPLKKWWFGLATSNLVHDDEMIRLMAKSG--CKGL 259

Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351
            +  ++ S   L++MN+         ++ + +    DIA++  F  G  G+  D F+ T+
Sbjct: 260 LIGFEAVSKESLRAMNKGVNVMADYHLLMK-KLHHYDIAVNGTFTFGADGDDKDIFKRTV 318

Query: 352 DLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           + V K+          +P   T   N LE+
Sbjct: 319 EEVIKMKVDLPRYSILTPFPKTKLYNDLEK 348


>gi|170764153|ref|ZP_02633144.2| radical SAM domain protein [Clostridium perfringens E str. JGS1987]
 gi|170661469|gb|EDT14152.1| radical SAM domain protein [Clostridium perfringens E str. JGS1987]
          Length = 559

 Score = 81.5 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 53/317 (16%), Positives = 110/317 (34%), Gaps = 34/317 (10%)

Query: 59  MDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEIL 118
            +  D++   +C+I          F+ R+  L         ++ ++  G     EG+E L
Sbjct: 53  EEKPDVVAF-SCYIWN------MEFVNRLAELIKL---VDPNIEILYGGPEVSYEGKEFL 102

Query: 119 RRSPIVNVVVGPQTYYRLPELLERARFGKR-------------VVDTDYSVEDKFERLSI 165
                  V+VG         +L +   GK              V +     E     L  
Sbjct: 103 ENHEGEYVIVGEGEKTFREFVLYKLGEGKIEDIKGLNYKRDGIVFENPKRPEMDMNELVF 162

Query: 166 VDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEI 225
                        +     GC   C +C+     G      + +V  E +  ++ G+  +
Sbjct: 163 PYTYEEDINNKIVYYEASRGCPFKCKYCLSSVMHG-VRFLDVERVKKELKYFMERGLKLV 221

Query: 226 TLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLD 285
             + +  N  R   +        +LL  LSE     R  +  +    +++  I+   +  
Sbjct: 222 KFVDRTFNCNREYTV--------ELLKYLSEQDTETRFHFEVAADL-LTEEQIEILNNAP 272

Query: 286 VLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDD 345
                L + VQ+ ++ +L ++NR  T    ++ + ++ +   ++    D I G PGE  +
Sbjct: 273 KGRFQLEVGVQTTNNEVLHNINRYITYENIKEKVLKV-AAGKNVMQHLDLIAGLPGEDLE 331

Query: 346 DFRATMDLVDKIGYAQA 362
            F+ + + V  I   + 
Sbjct: 332 SFKKSFNDVHAIRPDEI 348


>gi|224826494|ref|ZP_03699595.1| Protein of unknown function UPF0004 [Lutiella nitroferrum 2002]
 gi|224601095|gb|EEG07277.1| Protein of unknown function UPF0004 [Lutiella nitroferrum 2002]
          Length = 66

 Score = 81.5 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 31/60 (51%)

Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
          +    S GC   + DS ++     ++GY+   S DDADL+V+NTC   + A  +    +G
Sbjct: 7  KVGFVSLGCPKALVDSEQILTRLRAEGYDISPSYDDADLVVVNTCGFIDSAVAESLDAIG 66


>gi|170702899|ref|ZP_02893742.1| Radical SAM domain protein [Burkholderia ambifaria IOP40-10]
 gi|170132198|gb|EDT00683.1| Radical SAM domain protein [Burkholderia ambifaria IOP40-10]
          Length = 526

 Score = 81.5 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 46/205 (22%), Positives = 75/205 (36%), Gaps = 22/205 (10%)

Query: 177 TAFLTIQEGCDKFCTFCVVPYTRG-IEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNA 234
            A L    GC   C+FC      G     RS   V  E R L++  G+ E  +   N+  
Sbjct: 267 VAQLYTSRGCTAKCSFCTTTNFWGGKLRRRSPDNVTTEIRTLVERYGIDEYHIQDDNITN 326

Query: 235 WRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP 294
                   +K     L  +L++IK L       +    M + L+    D       +   
Sbjct: 327 --------DKEHARTLFRALADIK-LPWCTPQGTALWRMDEGLLDLMRDAG--CYQITFA 375

Query: 295 VQSGSDRIL-KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFP------GETDDDF 347
           ++SG  R+L   + +         ++   R +   + +   FI+G P      GET D+ 
Sbjct: 376 IESGVQRVLTDLIRKPLDLARTCHLVRYARDI--GLDVHGFFIIGMPPMFGCNGETIDEM 433

Query: 348 RATMDLVDKIGYAQAFSFKYSPRLG 372
           R T       G+  A  F  +P +G
Sbjct: 434 RETYRFACDAGFTSASFFTATPIVG 458


>gi|170744383|ref|YP_001773038.1| hopanoid biosynthesis associated radical SAM protein HpnJ
           [Methylobacterium sp. 4-46]
 gi|168198657|gb|ACA20604.1| hopanoid biosynthesis associated radical SAM protein HpnJ
           [Methylobacterium sp. 4-46]
          Length = 479

 Score = 81.5 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 60/345 (17%), Positives = 119/345 (34%), Gaps = 49/345 (14%)

Query: 54  ERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAE 113
           +      D DL+VL+T      +       +  +  LK        +L   + G     +
Sbjct: 61  DVAAQAKDFDLVVLHT------SVPSFKQDVATVEALKA----VNPNLKAGLIGAKVAVD 110

Query: 114 GEEILRRSPIVNVVVGPQTYYRLPELLE------------RARFGKRVVDTDYSVEDKFE 161
            +  L ++P ++ V   +  +   E+ +            R   G  V + D  V    +
Sbjct: 111 AQGSLEKAPAIDFVARNEFDFTCKEVADGRDLAQIKGLSYRNASGVIVHNEDRPVMMDMD 170

Query: 162 RLSIVDGGYNR----KRGVTAFLT---IQ----EGCDKFCTFCVVPYTRGIE--ISRSLS 208
           +L  V   Y R    +     +L    I      GC   CTFC+ P T G     +RS+ 
Sbjct: 171 QLPFVTSVYKRDLVMENYFIGYLKHPYISFYSGRGCKSRCTFCLWPQTVGGHTYRTRSVG 230

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
            V++E +  +                +             ++   L ++     + ++ +
Sbjct: 231 HVIEEIKYCLKA------FPQTKEFFFDDDTFTDNLPRAQEIARELGKLG----VTWSCN 280

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
              ++    +K   D    +  L +  +SG+ +IL ++ +        +       +   
Sbjct: 281 AKANVPRETLKVLRD--NGLRLLLVGYESGNQQILHNIKKGMRVEVAEKFTKDCHDL--G 336

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
           IAI   FI+G PGE+ +  + T+    +I          +P  GT
Sbjct: 337 IAIHGTFILGLPGESKETIQETIKFATRINPHTIQVSLAAPYPGT 381


>gi|322418142|ref|YP_004197365.1| Radical SAM domain-containing protein [Geobacter sp. M18]
 gi|320124529|gb|ADW12089.1| Radical SAM domain protein [Geobacter sp. M18]
          Length = 488

 Score = 81.5 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 67/315 (21%), Positives = 121/315 (38%), Gaps = 38/315 (12%)

Query: 95  IKEGGDLLVVVAGCVAQAEGEEILRRSPI-VNVVVGPQTYYRLPELLERA---------- 143
            +   D++ ++ G       EEIL      V+ +V  +    L +LL             
Sbjct: 96  KEINPDIVTLLGGPHPTFMYEEILEERENRVDYIVTGEPEQTLKKLLAALSGSGDPKAVK 155

Query: 144 ----RFGKRVVDTDYSVE-DKFERLSIVD--------GGYNRKRGVTAFLTIQEGCDKFC 190
               R G+R++ T      +  + L                  RG  A +    GCD  C
Sbjct: 156 GVAYREGERILYTGKQPHIEDLDTLKPAWQLLDWEDYNYLVEPRGRMASILTSRGCDMEC 215

Query: 191 TFCVVP-YTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFS 248
            FC    + R     R   +VV+E + LID+ GV   TL+                  F 
Sbjct: 216 AFCSQRMFWREDWRCRKPEKVVEEMQHLIDSYGVNFFTLID-----AYPTKHRERWELFL 270

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
           DL+  + +  G+  L  T        + ++  + +  ++  +++L  +S    IL S+N+
Sbjct: 271 DLV--IEKKLGVYLLIETRVEDIIRDEDILHKYREAGII--HVYLGAESADKDILGSLNK 326

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
             +  + ++ +D +R  R  I   + F++GFP ET +  + T+D    +    A     +
Sbjct: 327 GTSFEQNKRALDLLREAR--IITEASFMIGFPTETWESIQNTIDSAIYLNPDIAVFPVVT 384

Query: 369 PRLGTPGSN-MLEQV 382
           P   TP    M E++
Sbjct: 385 PMPFTPIHKEMKERI 399


>gi|70939683|ref|XP_740353.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56518009|emb|CAH76701.1| hypothetical protein PC000675.01.0 [Plasmodium chabaudi chabaudi]
          Length = 500

 Score = 81.5 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 22/78 (28%), Positives = 45/78 (57%), Gaps = 2/78 (2%)

Query: 19  DQCIVPQRF--FVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA 76
           +  I+P+ +  + KS+GC  N  DS  M  +  + G++ V ++DD D+ ++N+C ++  +
Sbjct: 207 NNVIIPENYNIYFKSFGCAHNSSDSEFMMGLLSNYGFQFVKNIDDCDICIVNSCTVKNPS 266

Query: 77  AEKVYSFLGRIRNLKNSR 94
            E + + +  + NL  SR
Sbjct: 267 EESMKTIINYVNNLNKSR 284



 Score = 52.3 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 42/102 (41%), Gaps = 8/102 (7%)

Query: 92  NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVD 151
             R + G D+ ++V GCV QA  E  ++    V++V G     ++ + +E    G  V  
Sbjct: 406 KKRTRSGRDIKIIVCGCVPQA--ENDMKIFENVSLV-GVNNIDKIVDAVENVINGYNVKY 462

Query: 152 TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC 193
              S +     L  +     RK      + I  GC   CT+C
Sbjct: 463 LKQSKKMTSLNLPKI-----RKNKFIEIININNGCLGNCTYC 499


>gi|27375964|ref|NP_767493.1| Mg-protoporphyrin IX monomethyl ester oxidative cyclase 66kD
           subunit [Bradyrhizobium japonicum USDA 110]
 gi|27349103|dbj|BAC46118.1| Mg-protoporphyrin IX monomethyl ester oxidative cyclase 66kD
           subunit [Bradyrhizobium japonicum USDA 110]
          Length = 508

 Score = 81.5 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 54/314 (17%), Positives = 101/314 (32%), Gaps = 33/314 (10%)

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           I  +  + +K    +L+V  G        EIL   P V+ +V  +       L+    +G
Sbjct: 82  IAAVACALVKVMPRVLIVYGGVFPTYHWREILHDEPYVSAIVRGEGEETARRLMRALEYG 141

Query: 147 KRVVDT---------------DYSVEDKFERLSIVDGGYNRKR-----GVTAFL-TIQEG 185
           + + D                   V    +   I     +  R     G+ A +     G
Sbjct: 142 RDLADIAGIAFRDVSGPRATQPAPVIANLDACRIGWELIDHARYSYWGGLRAVVVQFSRG 201

Query: 186 CDKFCTFCVVPYTRGIEISR-SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK 244
           C   C +C           R  +    + AR   + GV  I    +N           +K
Sbjct: 202 CPHLCNYCGQRGFWTRWRHRDPVRFAKELARLHREQGVKVINFADENPTVS-------KK 254

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304
              + L   ++E   L+ +  T +        ++  +           L +++  +R L+
Sbjct: 255 VWRAFLEALIAENVDLILVGSTRADDIVRDADILHLYKKAG--WQRFLLGLENTDERTLE 312

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
            + +  T    R+ I  +R     I   + ++VGF  ETD D    +  +      Q   
Sbjct: 313 LIRKGATTAVDREAIRLLRQ--HGILSMATWVVGFEEETDRDHWRGLKQLLAYDPDQVQL 370

Query: 365 FKYSPRLGTPGSNM 378
              +P   TP   +
Sbjct: 371 LYVTPHRWTPYFRL 384


>gi|257470194|ref|ZP_05634285.1| radical SAM domain-containing protein [Fusobacterium ulcerans ATCC
           49185]
 gi|317064410|ref|ZP_07928895.1| radical SAM domain-containing protein [Fusobacterium ulcerans ATCC
           49185]
 gi|313690086|gb|EFS26921.1| radical SAM domain-containing protein [Fusobacterium ulcerans ATCC
           49185]
          Length = 554

 Score = 81.5 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 39/293 (13%), Positives = 99/293 (33%), Gaps = 23/293 (7%)

Query: 92  NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVV-----------VGPQTYYRLPELL 140
               K   ++ +++ G       E+I+  +P ++ +              +   ++  L+
Sbjct: 78  KEIKKVLPNVKIILGGPEVSFGWEKIMEENPEIDSILIGEGEKVFLNFLTEENDKVMGLV 137

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
            R         T+  +ED        +    + +    +     GC   C++C +     
Sbjct: 138 YRKDGEVCFNGTEKIIEDLDIIPFPYEKEELQDKTKIFYYESSRGCPFNCSYC-MSSIDK 196

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
                SL +V ++ +  +D+ +  +  + +  N  + + ++  K    +    +      
Sbjct: 197 TVRYYSLDRVKEDLKIFLDSPIKLLKFVDRTFNLKKERYMEIWKFLLENYREGI------ 250

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
               +   +     D  +     +        + VQ+ +   +KS+NR        ++  
Sbjct: 251 --TFHFEINANIFDDETLDFLETVPKGYFQFEIGVQTINPDTMKSINRN---NILDKLAH 305

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
            +R +  +I +  D I G P ET + F+ + + V  +              GT
Sbjct: 306 NVRRINKNIHLHLDLIAGLPYETYEIFKKSFEYVHDLKPEMIQLGFLKLLRGT 358


>gi|117924020|ref|YP_864637.1| radical SAM protein [Magnetococcus sp. MC-1]
 gi|117607776|gb|ABK43231.1| Radical SAM domain protein [Magnetococcus sp. MC-1]
          Length = 516

 Score = 81.5 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 41/197 (20%), Positives = 73/197 (37%), Gaps = 15/197 (7%)

Query: 181 TIQEGCDKFCTFCVVPYTRG-IEISRSLSQVVDEARK-LIDNGVCEITLLGQNVNAWRGK 238
           +   GC   C +C      G     RS   V+ E      D GV EI  L  N+      
Sbjct: 209 STSRGCPYDCIYCSTHSIDGSKVRLRSAENVLQEIDILYNDYGVKEILFLDDNLII---- 264

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
                +  F  +L  L +    +  +        +++ +++           L LP++SG
Sbjct: 265 ----NRKRFKQILQGLIDRDYDLWWKSLNLATFLLTEDMLEMMKAAKTY--QLILPIESG 318

Query: 299 SDRILKSM-NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
           +  +L  +  +     +   ++ + + +     IS+DFI+G PGET D  R T    D++
Sbjct: 319 NQYVLDHVLKKPLDLKKVPPLVKKGKEL--GFEISADFIIGSPGETWDQIRDTCTFADEM 376

Query: 358 GYAQAFSFKYSPRLGTP 374
                     +P   T 
Sbjct: 377 DVDMVSFHIATPLPKTE 393


>gi|283833539|ref|ZP_06353280.1| BchE/P-methylase family protein [Citrobacter youngae ATCC 29220]
 gi|291071209|gb|EFE09318.1| BchE/P-methylase family protein [Citrobacter youngae ATCC 29220]
          Length = 447

 Score = 81.5 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 55/303 (18%), Positives = 101/303 (33%), Gaps = 28/303 (9%)

Query: 88  RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147
           R  + +       + VV+ G  A    EE+ +     + V       R  E+++ AR G+
Sbjct: 72  RAYEIADEYRQRGVKVVMGGIHATLLPEEVQQ---HADSVFTGDAETRWQEMIDDARVGR 128

Query: 148 RVVDTDYSV----EDKFERLSIVDGGYNRKRG--VTAFLTIQEGCDKFCTFCVVPYTRGI 201
                D  V     D   +  +      R +G    + +    GC   C FC V    G 
Sbjct: 129 LKPRYDAPVGVGQVDGCHQALLPRRNVFRGKGYLPISLMQFSRGCRYACNFCAVSQYFGR 188

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
                L QV D  R++       I  +  N+ +        +    ++L ++L     L 
Sbjct: 189 -RHY-LRQVDDVVREITAQNSRFIFFVDDNIAS--------DHRALAELCHALI---PLK 235

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY---EYRQI 318
               + +     ++  +    +       + +  +S +   L    +         YR  
Sbjct: 236 INWISQASLDVTNNRPLMTLMEKSGCWGNV-MGFESITPASLHDARKSPNVRRFNHYRDE 294

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           I  +R     +   + F +G+  +T D    T+D   +  +A A      P   TP  N 
Sbjct: 295 IAALRDY--GLQTWAAFTLGYDHDTPDSIARTVDFALQNRFAFAAYNILMPYPNTPLYNQ 352

Query: 379 LEQ 381
           L Q
Sbjct: 353 LRQ 355


>gi|149914217|ref|ZP_01902748.1| Magnesium-protoporphyrin IX monomethylester oxidative cyclase, 66
           kDa subunit(bchE) [Roseobacter sp. AzwK-3b]
 gi|149811736|gb|EDM71569.1| Magnesium-protoporphyrin IX monomethylester oxidative cyclase, 66
           kDa subunit(bchE) [Roseobacter sp. AzwK-3b]
          Length = 553

 Score = 81.5 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 63/386 (16%), Positives = 125/386 (32%), Gaps = 64/386 (16%)

Query: 43  RMEDMFFSQGYE-------RVNSMDD-----------ADLIVLNTCHIREKAAEKVYSFL 84
            +     + GY+         N++++            D++    C     +  +    L
Sbjct: 28  YLAGPLKAAGYDDITFIDAMTNNVEEDELRARIAELQPDIV---GCTAITPSIYRAERVL 84

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
              +           D + V+ G  A    +++L  +P ++ +V  +      + +    
Sbjct: 85  EIAKEA-------APDCVTVLGGVHATFMFKQVLSEAPHIDAIVRGEGEEVFLDFVRAVE 137

Query: 145 FGK----------------------RVVDTDYSVEDKFERLSIVDGG---YNRKRGVTAF 179
            G+                      +   T  +++      SI++     Y       A 
Sbjct: 138 DGRWYTDRKHIKGIAYTDEGEIVATQAAPTVKNLDGLTPDWSILEWDKYIYIPLNTRLAI 197

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGK 238
            ++  GC   C+FC           R   +VVDE   L++N GV    L  +     R K
Sbjct: 198 PSMARGCPFTCSFCSQWKFWRDYRVRDPKKVVDEIEDLVENHGVGFFILADEEPTINRRK 257

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
             +  +   +  L     +K  +  R T          L +  G     + ++ L  ++ 
Sbjct: 258 FTEFCEELIARGLP--DRVKWGINTRVTDIQRDKDQLGLWRRAG-----LVHISLGTEAA 310

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           +   L   N+     E ++ I  +R    DI   + FIVG   ET++    T        
Sbjct: 311 AQMKLDLFNKETRVEENKEAIRLLREA--DIFTEAQFIVGLDNETEETLEETYRFARDWN 368

Query: 359 YAQAFSFKYSPRLGTPGS-NMLEQVD 383
              A    Y+P   TP    + ++V+
Sbjct: 369 PDLANWTMYTPWPFTPLFQELGDKVE 394


>gi|145219131|ref|YP_001129840.1| magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative
           cyclase [Prosthecochloris vibrioformis DSM 265]
 gi|145205295|gb|ABP36338.1| magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative
           cyclase [Chlorobium phaeovibrioides DSM 265]
          Length = 546

 Score = 81.5 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 51/357 (14%), Positives = 109/357 (30%), Gaps = 48/357 (13%)

Query: 42  LRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDL 101
             M D    +  E +   +  D++++            +   + + +++     K    +
Sbjct: 45  DAMADDLPDEQIEEIIRANKPDVVMV----------TNITPSIFKAQDIMKIAKKVDPKI 94

Query: 102 LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG--------------- 146
             ++ G  +     ++L  +P  + V+  +       L++    G               
Sbjct: 95  RTIMGGIHSTFMYPQVLSEAPETDYVIRGEGEEIAVNLVKAIAAGNDRETRGEITGIAYI 154

Query: 147 ----KRVVDTDYSVEDKFERLSIVDGGYNRKRGVT-------AFLTIQEGCDKFCTFCVV 195
               K      + V +  + LS     Y+  + +        A      GC   CTFC  
Sbjct: 155 DDDGKVFATAAHPVIEDLDTLSPDWSLYDWDKYIYTPLNCRLAVPNFARGCPFTCTFCSQ 214

Query: 196 PYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL 254
                   +R+    VDE   L+    V    L  +     + K +        +L+   
Sbjct: 215 WQFWRRYRARTPKNFVDEIEVLVKKYNVGFFILADEEPTINKQKFV----SLCQELIDRK 270

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
            ++   +  R T          L+       ++  ++ L  ++ S   L    +  T  E
Sbjct: 271 LDVTWGINTRVTDIMR---DADLLPFFRKAGLV--HVSLGTEAASQMNLNRFRKETTIEE 325

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
            +  I  ++     I   + F++G   ET +    T  L        A    Y+P  
Sbjct: 326 NKLAIKLLQKN--GIVAEAQFVMGLEHETPETIEETFQLCKDWDPDMANWTIYTPWP 380


>gi|158523068|ref|YP_001530938.1| radical SAM domain-containing protein [Desulfococcus oleovorans
           Hxd3]
 gi|158511894|gb|ABW68861.1| Radical SAM domain protein [Desulfococcus oleovorans Hxd3]
          Length = 529

 Score = 81.5 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 62/324 (19%), Positives = 104/324 (32%), Gaps = 35/324 (10%)

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
                   +          LL+V+ G        E L   P +++VV  +    +  + E
Sbjct: 70  MTFDHAAEIVRDLRAVAPKLLIVMGGPHVSMCARETLDALPELDMVVVGEGDDTVVRIAE 129

Query: 142 RARFGKRVVDTD-----------------YSVEDKFERLS---IVDGGYNRKRGVTAFLT 181
                +R    D                 Y+V+ K   L    +V  G  R   +   +T
Sbjct: 130 ELAGDRRWETIDGIVYRDKTGICSTPVREYAVDVKALPLPARHLVPLGRYRALNMPVSMT 189

Query: 182 IQEGCDKFCTFCVVPYTRG-IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL 240
              GC   C FCV     G     R    VVDE   L      ++ +      A R    
Sbjct: 190 TSRGCPFKCIFCVGRKMVGAKVRYRDPVSVVDEMEYLKSLSFSQVNIADDLFTASR---- 245

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300
                 F      L    G+     + +    +S  L+K   +       +   V++ + 
Sbjct: 246 ---PHCFGVCDEILRR--GMNIQWSSFARVDLVSYDLLKKMREAG--CVAVSFGVETANP 298

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
            ILK++ +  T  +    +         +     FI+G PGET D    T    +KI  A
Sbjct: 299 EILKTIKKGITLEQVEAAVKACADA--GVLPHVSFILGLPGETPDTIEETRTFGEKIK-A 355

Query: 361 QAFSFKYSPRLGTPGSNMLEQVDE 384
              S+ +      PG+ + ++  E
Sbjct: 356 MGASYGFHLLAPFPGTEIRDRAAE 379


>gi|114329065|ref|YP_746222.1| radical SAM superfamily protein [Granulibacter bethesdensis
           CGDNIH1]
 gi|114317239|gb|ABI63299.1| radical SAM superfamily [Granulibacter bethesdensis CGDNIH1]
          Length = 478

 Score = 81.5 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 50/305 (16%), Positives = 103/305 (33%), Gaps = 35/305 (11%)

Query: 92  NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE---------- 141
            +       L +   G     + EE L+    V+ V   +  + + E+ E          
Sbjct: 90  QALKDANPSLKIGFVGAKVAVQPEESLKSGGPVDWVARNEFDFTVKEVAEGRDLATIAGL 149

Query: 142 --RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLT-----------IQEGCDK 188
             R   G+ + + D  + +  ++L  V   Y R   +  +                GC  
Sbjct: 150 SWRNANGEIIHNPDREILEDMDQLPFVTEVYKRDLKIEDYFIGYLKHPYLSLYTGRGCKS 209

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS 248
            CTFC+ P T G    R  S       + I         + +          D  +    
Sbjct: 210 RCTFCLWPQTVGGHRYRVRSP--QHVAEEIALAKKYFPQVKEFFFDDDTFTDDLPRA--- 264

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
               +++   G + + ++ +   ++    +K   D    +  L +  +SG+ +IL ++ +
Sbjct: 265 ---EAIAREMGKLGVTWSCNAKANVPRETLKILKD--NGLRLLLVGYESGNQQILHNIKK 319

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
                  ++       +   I I   FI+G PGET +  + T++   ++          +
Sbjct: 320 GLRIEVAKKFSKDCHDL--GIKIHGTFILGLPGETKETIQETIEYAKEVNPHTLQVSLAA 377

Query: 369 PRLGT 373
           P  GT
Sbjct: 378 PYPGT 382


>gi|303239514|ref|ZP_07326040.1| Radical SAM domain protein [Acetivibrio cellulolyticus CD2]
 gi|302592892|gb|EFL62614.1| Radical SAM domain protein [Acetivibrio cellulolyticus CD2]
          Length = 568

 Score = 81.5 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 41/247 (16%), Positives = 95/247 (38%), Gaps = 17/247 (6%)

Query: 115 EEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKR 174
           E  +  +P ++ ++  +      + LE +    + + +   + ++   LS V+       
Sbjct: 199 EYFINNTPYIDKIMVGEGEILFTKYLEGSLGQDKKMYSLLDLGEETLDLSRVEVPDFSDL 258

Query: 175 GVTAFLTI----QEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQ 230
            + ++  I       C   C+FC      G    +  +Q+VDE   L      ++ L G 
Sbjct: 259 KLDSYPQITAYASRSCPFQCSFCSETVQWGKYRKKDANQIVDETLMLYKKHGSQLFLFGD 318

Query: 231 NVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY 290
           ++     +               +   + +    Y  +                      
Sbjct: 319 SLLNPVIED---------LADEYIRRGESIYWDGYLRADKHVCDPE--NTFKWRRGGFYR 367

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
             + V+SGS R+L  M++R    + ++ I  +      I  ++ +++GFPGET++DF  T
Sbjct: 368 ARIGVESGSQRVLNLMDKRTKIEQIKEAISSL--AYAGIKTTTYWVIGFPGETEEDFMET 425

Query: 351 MDLVDKI 357
           ++L++++
Sbjct: 426 LNLIEEL 432


>gi|300087155|ref|YP_003757677.1| radical SAM domain-containing protein [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
 gi|299526888|gb|ADJ25356.1| Radical SAM domain protein [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
          Length = 487

 Score = 81.1 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 53/310 (17%), Positives = 101/310 (32%), Gaps = 34/310 (10%)

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVV---GPQTYYRLPELL 140
           + +  +      +   +  ++          E+ L   P ++ V+   G +   +L E L
Sbjct: 73  ITQAISQSQEFKELFPEAKLIWGNVHPSTTPEQTLAE-PYIDYVIRGAGEEPLLKLVEHL 131

Query: 141 E--------------RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGC 186
           E              RA+ G +       +++  E         + K+   A L    GC
Sbjct: 132 ETGSPALSEIPGLAYRAQDGIQQNPASQELKNLDELPDPAWHLIDVKKYWAASLNTSRGC 191

Query: 187 DKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEK 244
              CTFC             S  ++V +   L    G+  I     N    R +     K
Sbjct: 192 PFRCTFCYNSAFHAGYRGDFSAERIVSQVEHLQKEYGIEFIRFFEDNFTFNRKRLHQFCK 251

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304
                 +           +++      D+S+  I            + + V++GS R+L+
Sbjct: 252 LIIDKKIK----------IKWDCEARADLSEEDISLMAKAG--CTAVGIGVETGSKRMLE 299

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
            + +     E  +    +   R  I+     +   P ET +DF  T D + K+       
Sbjct: 300 FLKKGVDLDEMEKSFWLLVKYR--ISPRLYIMEALPTETIEDFNLTRDFLKKLDNPPFLY 357

Query: 365 FKYSPRLGTP 374
            ++ P  GTP
Sbjct: 358 MRFVPYAGTP 367


>gi|218780002|ref|YP_002431320.1| radical SAM domain protein [Desulfatibacillum alkenivorans AK-01]
 gi|218761386|gb|ACL03852.1| Radical SAM domain protein [Desulfatibacillum alkenivorans AK-01]
          Length = 493

 Score = 81.1 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 63/321 (19%), Positives = 112/321 (34%), Gaps = 48/321 (14%)

Query: 79  KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPE 138
                L  IR++K +       + V+V G   +   EE     P ++       YY +P 
Sbjct: 83  MFRETLQWIRHVKENL----PRVRVIVGGYNLRVYPEE-SVMPPEIDYGCFNSAYYTVPG 137

Query: 139 LLERARF--------------GKRVVDTDYSVEDKFERLSIVDGG---------YNRKRG 175
           LLE                  G +V+ T+Y  E  F                  +  +R 
Sbjct: 138 LLEALENNHDLSDVPGLIYKQGTKVIQTEYGPEPHFNDYPNPARHLLPNELYAEFPTERK 197

Query: 176 VTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLID-NGVCEITLLGQNVNA 234
               +   +GC   C FC    T     S  +  VVDE ++  D +GV EI +       
Sbjct: 198 NFTVMVTSKGCPMNCLFCEARSTPYNPRS--IQTVVDEIQECYDVHGVREIDIFD----- 250

Query: 235 WRGKGLDGEKCT--FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLH 292
                +D ++      +++    +I    R R  +         L+    +       ++
Sbjct: 251 -YEFLVDRKRAMGICEEIIRRDLDILWACRARIDSLDE-----DLLARMKESG--CGRVY 302

Query: 293 LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352
           L ++SG   +L  +N+  T  + R+ +D  ++    I     F+ G PGET    + T+ 
Sbjct: 303 LGIESGLQEMLDRVNKGITIEQVRRAVDMTKA--HGIKTLGFFMTGLPGETRQTVKETLK 360

Query: 353 LVDKIGYAQAFSFKYSPRLGT 373
               +G       K + +  T
Sbjct: 361 FATSLGLDYVQFSKTTAKPLT 381


>gi|257468751|ref|ZP_05632845.1| Radical SAM domain protein [Fusobacterium ulcerans ATCC 49185]
 gi|317063005|ref|ZP_07927490.1| cobalamin B12-binding:Radical SAM [Fusobacterium ulcerans ATCC
           49185]
 gi|313688681|gb|EFS25516.1| cobalamin B12-binding:Radical SAM [Fusobacterium ulcerans ATCC
           49185]
          Length = 434

 Score = 81.1 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 65/374 (17%), Positives = 126/374 (33%), Gaps = 54/374 (14%)

Query: 36  MNVYDSLR-----MEDMFFSQGYERVNSMD---------DADLIVLNTCHIREKAAEKVY 81
            N  D+++     + D    +G E     D          +D+IV +             
Sbjct: 13  KNSSDAMKPLIFPILDSLTPEGIELEFFDDRIEKLPEEIASDIIVFSAETF--------- 63

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             + R   L     K+    + VV G  +    EE       V V           +++E
Sbjct: 64  -SIKRTYMLSQKYKKD--SNITVVGGFHSTVLPEESELYCDCVLV---GDAEDTWSKMIE 117

Query: 142 RARFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
             + GK +   T     +             RK      +    GC   C FC +     
Sbjct: 118 DYQKGKLKKRYTSKFSRELGYIDHYHKSFEGRKYQPVGIVQFSRGCKFDCDFCSIKSMYR 177

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
             + +    +++   K+++     +  +  N+           K +F   L  +  +K  
Sbjct: 178 ENVRQKNWDILERELKVLNE--KILFFIDDNLFY--------NKESFFKFLQIIKPLKK- 226

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH--TAYEYRQI 318
            R     S      D +++        M  + +  +S +   L+ MN++   T  +Y   
Sbjct: 227 -RWVCQISLEIAFQDDILEEMKKSGCFM--VVIGFESMNSLNLQQMNKKANLTISDYDNA 283

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           ++ I   +  + I   FI G+  +T ++ + T+D   K  +A A      P  GT    +
Sbjct: 284 VENI--YKHGLLIYGTFIFGYDYDTLENVKGTIDFAHKHNFAVANFNPLIPMPGT---KL 338

Query: 379 LEQVDENVKAERLL 392
            +++    K+ERLL
Sbjct: 339 YDRL---EKSERLL 349


>gi|320012974|gb|ADW07823.1| Radical SAM domain protein [Streptomyces flavogriseus ATCC 33331]
          Length = 513

 Score = 81.1 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 53/215 (24%), Positives = 89/215 (41%), Gaps = 20/215 (9%)

Query: 172 RKRGVTAFLTIQEGCDKFCTFCVVPYTRGI---EISRSLSQVVDEARKLIDN-GVCEITL 227
           R   + A +    GC   CTFC    +         RS   ++ E  +L D  GV     
Sbjct: 230 RTGHLEANIVGSRGCPYNCTFCGAAVSANPDLTIRVRSPENIIGELDQLHDEYGVTAFRF 289

Query: 228 LGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL 287
           +  ++    G+ +  +   F+   + + E              R     L +        
Sbjct: 290 V-DDLFLGAGRVIAEQMTAFA--RHRIGERYVWDATGRINVLDRLGDRDLDRLVQ---NG 343

Query: 288 MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDF 347
           +  + L ++SGSDR+L++M++R  A    ++  R+  VR  I +   FI+GFPGET DD 
Sbjct: 344 LREVALGIESGSDRVLRAMDKRIDAAMTERVAQRL--VRHGIGVKGYFILGFPGETHDDI 401

Query: 348 RATMDLVDKI--------GYAQAFSFKYSPRLGTP 374
            AT+  +  +        G  +A  F++ P  GTP
Sbjct: 402 AATVRHIRNLWAIADSSPGEVRASVFEFRPYPGTP 436


>gi|257052266|ref|YP_003130099.1| Radical SAM domain protein [Halorhabdus utahensis DSM 12940]
 gi|256691029|gb|ACV11366.1| Radical SAM domain protein [Halorhabdus utahensis DSM 12940]
          Length = 590

 Score = 81.1 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 74/406 (18%), Positives = 126/406 (31%), Gaps = 73/406 (17%)

Query: 125 NVVVGPQTYYRLPELLERARFG--KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTI 182
           + + G      + +L+E    G   R    D S     E   IV+   N    +   +  
Sbjct: 135 DFLAGADIEAAVFDLVENGLEGFDPRYRTMDESSRWAREGAFIVEQHPNHPDYLICEIET 194

Query: 183 QEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQ-NVNAWRGKGLD 241
             GC   C+FC  P   G    R    VV E   L D+GV    L  Q ++ A+ G G  
Sbjct: 195 GRGCAYRCSFCTEP-LYGDASFREPDAVVSEVDALSDHGVTNFRLGRQADILAYGGDGEA 253

Query: 242 GEKCTFSDLLYSLSEI-KGLVRLRYTTSHPR------DMSDCLIKAHGDLDVLMPYLHLP 294
                  +L   + ++  GL  L     +P       + +   I+   + +         
Sbjct: 254 PNPDALRELYRGIRKVAPGLETLHLDNMNPITVVKWPEKAREGIRIIAEHNTPGDTAAFG 313

Query: 295 VQSGSDRILKSMNRRHTAYEYRQII----------------------------------- 319
           V+S    +    N   TA E  + +                                   
Sbjct: 314 VESADPAVQSDNNLNVTADEALEAVRIVNEEGGFRPGARSEATGSGRASGDSREPGGDRD 373

Query: 320 ------DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA------QAFSFKY 367
                 D      P +    +F+ G  GET + F      + +I         +    + 
Sbjct: 374 NAPTFGDDAARGLPKLLPGINFVHGLKGETAETFEHNKRFLQRI-LDEGLMIRRVNIRQV 432

Query: 368 SPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACV------GQIIE-VLIEK 420
               GT     +++    +  +     Q   RE + + ++  +      G I+E V +E 
Sbjct: 433 MAFPGTE----MDETGAEIAQDHKRQFQAYKREVRETIDNPMLQRVAPPGTILEDVHLE- 487

Query: 421 HGKEKGKLVGR-SPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYG 465
              + GK  GR       +V       +G  I V ITD    ++ G
Sbjct: 488 -YHQDGKTFGRQLGTYPLLVGIPGERPLGKTIDVAITDHGYRSVTG 532


>gi|237736632|ref|ZP_04567113.1| radical SAM domain-containing protein [Fusobacterium mortiferum
           ATCC 9817]
 gi|229420494|gb|EEO35541.1| radical SAM domain-containing protein [Fusobacterium mortiferum
           ATCC 9817]
          Length = 556

 Score = 81.1 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 42/303 (13%), Positives = 99/303 (32%), Gaps = 23/303 (7%)

Query: 90  LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVV-----------GPQTYYRLPE 138
           L     K   ++ + + G     E E+ +R +  ++ +              Q   ++  
Sbjct: 76  LSKELKKILPNVKIALGGPEVSYEWEKTMRENEEIDYIFTGEGEKILLNFFTQDISQVKG 135

Query: 139 LLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
           ++ R     +    +  +E+        D    + R    +     GC   C++C +   
Sbjct: 136 VVYRVDEEIKYNGIEPLIENLDIIPFPYDEEELQDRTKIFYYESSRGCPFNCSYC-MSSI 194

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258
                  S+ +  ++ ++ ID+ +  +  + +  N  + K +   K    +    +    
Sbjct: 195 DKSVRYYSIERTKEDLKRFIDSPIKLLKFVDRTFNLSKEKYMVIWKFLLENYREGI---- 250

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
                 +   +     +  +     +        + VQ+   + +KS+ R        ++
Sbjct: 251 ----TFHFEINANIFDEETLDFLETVPKGYFQFEIGVQTIDVQAMKSIGR---VNNLERL 303

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
              IR +  +I +  D I G P ET + FR + D V  +              GT     
Sbjct: 304 EHNIRRISRNIHLHLDLIAGLPYETYEKFRYSFDYVHSMKPEMIQLGFLKLLKGTKMYEE 363

Query: 379 LEQ 381
            E+
Sbjct: 364 REK 366


>gi|148265632|ref|YP_001232338.1| radical SAM domain-containing protein [Geobacter uraniireducens
           Rf4]
 gi|146399132|gb|ABQ27765.1| Radical SAM domain protein [Geobacter uraniireducens Rf4]
          Length = 429

 Score = 81.1 bits (199), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 56/275 (20%), Positives = 91/275 (33%), Gaps = 22/275 (8%)

Query: 103 VVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFER 162
           VV+ G  A    +E L     V+ VV  +     P L+     G                
Sbjct: 86  VVMGGFHASNLPDEALN---HVHAVVVGEGDLVWPRLIADFERGALQPVYRPGAMLDMAD 142

Query: 163 LSIVDGGYNRKRGVTAFLTIQ--EGCDKFCTFCVVPYTRGI-EISRSLSQVVDEARKLID 219
           L +       ++G     TIQ   GC   C FC V    G     R + QV+ E   L  
Sbjct: 143 LPVARREIFDRKGYLLTNTIQTTRGCPFDCEFCSVTAFYGRKYRERPVEQVLAELEILRK 202

Query: 220 NGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIK 279
           N       +  N+ A R       +   S      S ++G+ R ++ +  P D +     
Sbjct: 203 NNS-FAFFVDDNLVANR-------RYALSLF----SAMRGM-RFKWLSHAPIDFAKDPEL 249

Query: 280 AHGDLDVLMPYLHLPVQSGSDRILKSMNR-RHTAYEYRQIIDRIRSVRPDIAISSDFIVG 338
                +     + +  +S +   L +M +  + A  Y +     R     I I   F++G
Sbjct: 250 MRAAGEAGCIGMFVGFESLNQEALVAMGKVTNRADAYLEQARAFRDN--GIGILGSFVLG 307

Query: 339 FPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
             G+T   F   +   +      A     +P  GT
Sbjct: 308 CDGDTPAVFEPILRFCEAARIEAAIFPILTPYPGT 342


>gi|332797928|ref|YP_004459428.1| Radical SAM domain-containing protein [Acidianus hospitalis W1]
 gi|332695663|gb|AEE95130.1| Radical SAM domain protein [Acidianus hospitalis W1]
          Length = 525

 Score = 81.1 bits (199), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 58/293 (19%), Positives = 104/293 (35%), Gaps = 24/293 (8%)

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
           K S++KE  +  V+  G  +    E  LR+   V+VV   +    LP + ++   G+ V 
Sbjct: 131 KVSKLKEKYNFKVIAGGPGS---WELSLRKPDWVDVVFLGEAEVDLPIIAKKIIDGEDVP 187

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC-VVPYTRGIEISRSLSQ 209
                   K E +  +             + I  GC + C FC V P T     S  L Q
Sbjct: 188 PIVKGRNAKIEEIPTIKNPARLGE-----VQITRGCPRGCKFCSVTPET---FRSIPLDQ 239

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE--IKGLVRLRYTT 267
           +  E    +  G   +  +  +V  +    L         L   +    + G+     + 
Sbjct: 240 IKKEVEVNLKGGWRRVEFITDDVMLYGSSKLRTNHDAIVKLFTEVMNMGVDGIWFPHISA 299

Query: 268 SHPRDMSDCL--IKAHGDLDVLMPYL-HLPVQSGSDRILKSMNR----RHTAYEYRQIID 320
              R+    +  I      DV       + +++GS +IL+          T  E++ +I 
Sbjct: 300 PAVRESPKTVKAIAEIARYDVDRAAAPVVGLETGSLKILEKYMTAKAFPWTPREWKDVIL 359

Query: 321 RIRSVRPD--IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
              ++  D  I       +G+P E + D   +++LV  I     F+    P  
Sbjct: 360 DATAIMNDNYIYPCYTMTIGYPEEDERDVEDSINLVQSI-IDHKFTAWIFPLP 411


>gi|193214527|ref|YP_001995726.1| magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative
           cyclase [Chloroherpeton thalassium ATCC 35110]
 gi|193088004|gb|ACF13279.1| magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative
           cyclase [Chloroherpeton thalassium ATCC 35110]
          Length = 550

 Score = 81.1 bits (199), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 57/377 (15%), Positives = 117/377 (31%), Gaps = 54/377 (14%)

Query: 42  LRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDL 101
             M D    +  E +   +  D++++    I           + + +       K    +
Sbjct: 45  DAMVDDLSHEEIEAILRKNQPDVVMVG--AITP--------MIYKAQETLEIAKKVSPSI 94

Query: 102 LVVVAGCVAQAEGEEILRRSPIVNVVV-----------------GPQTYYRLP----ELL 140
           + ++ G  +     ++L  +P ++ +V                 G     R        +
Sbjct: 95  VTMLGGVHSTFMYSQVLTEAPWIDYIVRGEGEEIAVNLMKAIEAGTDKKDRHSIKGIAFI 154

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT-------AFLTIQEGCDKFCTFC 193
           +    GK V      V +  + LS      +  + +        A      GC   CTFC
Sbjct: 155 DN-ETGKIVATPAQPVIENLDDLSPDWSILDWPKYIYIPLNTRLAVPNFARGCPFTCTFC 213

Query: 194 VVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLY 252
                     +RS    VDE   L+    V    L  +     + K +        +L+ 
Sbjct: 214 SQWKFWRRYRARSPKHFVDEIEILVKEYKVGFFILADEEPTINKSKFI----ALCQELID 269

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
               +   +  R T          L+  +    ++  ++ L  ++ S   L    +  T 
Sbjct: 270 RNLNVGWGINTRVTDILR---DVDLLPFYRKAGLV--HVSLGTEAASQLNLSIFRKETTI 324

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
            E +  I  ++     I   + F++G   ET +    T  L        A    Y+P   
Sbjct: 325 EENKLAIKLLKDN--GIVAEAQFVMGLDHETPESIEETYRLCSDWDPDMANWTIYTPW-- 380

Query: 373 TPGSNMLEQVDENVKAE 389
            P + + E++ + V+  
Sbjct: 381 -PFAELFEELGDKVEVR 396


>gi|23015799|ref|ZP_00055566.1| COG1032: Fe-S oxidoreductase [Magnetospirillum magnetotacticum
           MS-1]
          Length = 480

 Score = 81.1 bits (199), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 52/311 (16%), Positives = 103/311 (33%), Gaps = 39/311 (12%)

Query: 92  NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE---------- 141
            +      ++++ + G       E  L  S  V+ V   +  Y + E+ E          
Sbjct: 90  EAFKAANPNIMIGMVGAHVATVPEVSLMASEAVDFVARHEFDYTIVEVAEGKPFAEIDGL 149

Query: 142 --RARFGKRVVDTDYSVEDKFERLSIVDGGYNRK-----------RGVTAFLTIQEGCDK 188
             R   GK V   D ++    + L  V   Y R            R          GC  
Sbjct: 150 TFRGEDGKPVHTKDRTLIHDMDALPYVGPVYRRDLNPEDYFIGYIRHPYMAFYTGRGCKS 209

Query: 189 FCTFCVVPYTRGI--EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT 246
            C+FC+ P T G     +RS + V++E + L      E+               D     
Sbjct: 210 KCSFCLWPQTIGGRVYRARSAASVIEEVK-LARQMFPEVR---------EFFFDDDTFTD 259

Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306
             + +  ++   G + + ++ +   ++    ++        +  L +  +SG   IL ++
Sbjct: 260 DLERVEEIARGIGHLGVPWSCNAKANIPRKTLEVLKA--NGLRVLVVGYESGVQEILNNI 317

Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
            +       ++       +   I +   FI+G PGET +  + T+    ++         
Sbjct: 318 RKGLRIDIIKRFSQDCHEL--GIVLHGTFILGLPGETKETIKQTLAFAKEVNPRTLQVSM 375

Query: 367 YSPRLGTPGSN 377
            +P  GT    
Sbjct: 376 AAPYPGTELYE 386


>gi|148642445|ref|YP_001272958.1| anaerobic magnesium-protoporphyrin IX monomethyl ester cyclase
           elongator protein [Methanobrevibacter smithii ATCC
           35061]
 gi|148551462|gb|ABQ86590.1| anaerobic magnesium-protoporphyrin IX monomethyl ester cyclase,
           Elongator protein 3/MiaB/NifB family [Methanobrevibacter
           smithii ATCC 35061]
          Length = 474

 Score = 81.1 bits (199), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 52/322 (16%), Positives = 103/322 (31%), Gaps = 41/322 (12%)

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-- 140
            +GR         +   D +VV+ G        E L     V++V+  +  Y +  L+  
Sbjct: 76  TIGRALETAQVVKETLPDAIVVMGGYHPTFNFIETL-EDENVDIVIRGEGEYIMLNLVQA 134

Query: 141 ---------------ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT-------- 177
                          E     + VV+ +  +    + L          +           
Sbjct: 135 LENQSSLHDVKGIVFEDKNSKEIVVNPEAPLIQDLDELPFPALNLLPMKKYRLLDMDTHM 194

Query: 178 AFLTIQEGCDKFCTFCVVPYTRGI-EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR 236
             +    GC   C+FC      G     RS+  +VDE   L  N          +  A+ 
Sbjct: 195 TTMITTRGCPMQCSFCSSAAMHGKKIRERSVENIVDEIEYLKTN-------YDIDTIAFM 247

Query: 237 GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD-MSDCLIKAHGDLDVLMPYLHLPV 295
                 +K     +   +  +K  + + +  +   D + + L+K   +   +   + + V
Sbjct: 248 DDTFTLKKRKVMAICDEI--LKRNIEIMWGCTSRVDTLDEKLLKKMKEAGCI--TIFIGV 303

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
           +S   + L +M +  T  +          ++  I   +   +G PG+T +    T+  V 
Sbjct: 304 ESADQQQLDNMCKNTTIAKIENAFKIAHKLK--IRTIASVALGMPGDTKEIMNKTVKFVH 361

Query: 356 KIGYAQAFSFKYSPRLGTPGSN 377
           K+    A     +P  GT    
Sbjct: 362 KLKPNYAIYSLATPYPGTRFYK 383


>gi|222055005|ref|YP_002537367.1| radical SAM protein [Geobacter sp. FRC-32]
 gi|221564294|gb|ACM20266.1| Radical SAM domain protein [Geobacter sp. FRC-32]
          Length = 468

 Score = 80.8 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 65/378 (17%), Positives = 117/378 (30%), Gaps = 61/378 (16%)

Query: 43  RMEDMFFSQGYER-------VNSMDDA----------DLIVLNTCHIREKAAEKVYSFLG 85
            +      +G+          +  + A          D +VL    IR            
Sbjct: 24  YLAGPLAERGHRLKVLDLCFADDPESAVSTALDEFTPDAVVL---SIRNIDNVTFPGSRS 80

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT------------- 132
            +  +K       G + V+  G        EIL        VVG                
Sbjct: 81  YLPGVKKIVDICRGRVPVIAGGSGFSIMPAEILAYLDADYGVVGEGEEILPELLTCISDG 140

Query: 133 --YYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190
                LP +L R + G        S+      L  ++  Y  + G  A L  + GC   C
Sbjct: 141 LIPESLPGVLVREKTGFLPARLIQSIRPAERGLFPLERYY--REGGMANLQTKRGCPFSC 198

Query: 191 TFCVVPYTRGI-EISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFS 248
            +C  P   G     R +  ++ E R L++  G+  I  +    N               
Sbjct: 199 IYCTYPLLEGRAIRVRPIGDIITEIRSLVEGFGIGYIYFVDDIFNYP------------P 246

Query: 249 DLLYSLSEIKGLVRLRYTT---SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
           +    L +     +L+       +P  ++  L++    +      +    +SGS  +L++
Sbjct: 247 EFAEELCQAMISEKLQINWTAFINPAFITPSLLQTM--IAAGCDAVEFGSESGSASMLRN 304

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           + +  T  + R      R    D A     + G PGE++     T  L+D++      + 
Sbjct: 305 LGKSFTVDDLRNSSRLCREAGADFA--HYILFGGPGESEATIDETFALMDELEPTAVIAM 362

Query: 366 KYSP-RLGTP--GSNMLE 380
                  GTP   S + +
Sbjct: 363 TGIRIFPGTPLHASALAD 380


>gi|288941935|ref|YP_003444175.1| magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative
           cyclase [Allochromatium vinosum DSM 180]
 gi|288897307|gb|ADC63143.1| magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative
           cyclase [Allochromatium vinosum DSM 180]
          Length = 560

 Score = 80.8 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 62/388 (15%), Positives = 125/388 (32%), Gaps = 69/388 (17%)

Query: 43  RMEDMFFSQGYE-------RVNSMDD-----------ADLIVLNTCHIREKAAEKVYSFL 84
            +     S GY+        V+ +DD            D+I          A   +   +
Sbjct: 28  YIAGYLKSGGYQDYHFIDGLVDKLDDDQMREAIRAAQPDII----------ATTAMTPMI 77

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
              + +     +E  + + V+ G       E++L  +P ++ +V  +       L+    
Sbjct: 78  YAAQRVLQIAKEEHPNAITVLGGIHGTFMYEQVLGEAPWIDAIVRGEGEAVTLNLVRCID 137

Query: 145 FGK------------------RVVDTDYSVEDKFERLSIVDGGYNRKRGVT--------A 178
            G+                  +V+ T+     K       D G    +           A
Sbjct: 138 EGRWPNERESVRGIAFRDESGKVIATEAEPSIKDVDSIWPDWGILEWKKYIYIPLGVPVA 197

Query: 179 FLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLID-NGVCEITLLGQNVNAWRG 237
              +  GC   C+FC           R+  ++VDE  +L+  +GV    L  +       
Sbjct: 198 TPNMARGCPFTCSFCSQWKFWRDYRVRNPKRMVDEIEELVKVHGVGFFILADEE------ 251

Query: 238 KGLDGEKCTFSDLLYSLSEIK-GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQ 296
                 K  F +    L +   G+     T        + L+  +    ++  ++ L  +
Sbjct: 252 --PQINKKMFIEFCQELIDRDLGIHWGINTRVTDVMRDEDLLPFYRKAGLV--HISLGTE 307

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
           + +   L    +  T  + ++ I  ++     I   + FIVG   ET +    T  +V  
Sbjct: 308 AAAQLNLDRFVKETTIEQNKRAIQLLQKN--GIVTEAQFIVGLENETRETLEETYQMVMD 365

Query: 357 IGYAQAFSFKYSPRLGT-PGSNMLEQVD 383
            G   A    Y+P   +   + M ++V+
Sbjct: 366 WGADMANWSMYTPWPFSDMFAEMGDKVE 393


>gi|222082692|ref|YP_002542057.1| hypothetical protein Arad_9414 [Agrobacterium radiobacter K84]
 gi|221727371|gb|ACM30460.1| conserved hypothetical protein [Agrobacterium radiobacter K84]
          Length = 618

 Score = 80.8 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 60/301 (19%), Positives = 114/301 (37%), Gaps = 24/301 (7%)

Query: 86  RIRNLKNSRIKEGGDLLVV---VAGCVAQ--AEGEEI-LRRSPIVNVVVGPQTYYRLPEL 139
           R  ++     + G  + +    V+GCVA    + EE+ L R   V+   G     RL  +
Sbjct: 116 RAMDIARPLRQAGVPVCIGGFHVSGCVAMLGEDAEELALARELGVSQFAGEAEPDRLDAV 175

Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVD--GGYNRKRGVTAFLTIQ--EGCDKFCTFCVV 195
           L+ A         ++  ++     S V    G   +R  T + +     GC   C+FC +
Sbjct: 176 LQDALADTLKPLYNHLKKEPVLPGSPVPLLPGPIVRRSFTHWSSFDLGRGCPFECSFCTI 235

Query: 196 PYTRGIE-ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL 254
              +G     R+  ++    R     GV +  +   N    R            D L  L
Sbjct: 236 INVQGRHSRFRTADELERIVRLNAAAGVTKFFVTDDNFARNRNWEAY------CDRLIEL 289

Query: 255 SEIKGL-VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA- 312
            E +GL VRL              I     +   +  + + +++ +   L++  +R    
Sbjct: 290 REREGLEVRLLIQVDTMAHRIPGFIDKV--VKAGVRLIFIGLENINPDNLEAAKKRQNRI 347

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD-KIGYAQAFSFKYSPRL 371
            EYR+++   +  R  + +S  +I+GFP +T +     +DL+  ++     +    +P  
Sbjct: 348 EEYREMVLDWK--RHPVVVSCGYIIGFPADTRESILRDVDLIKRELAIDVLYFNILTPLP 405

Query: 372 G 372
           G
Sbjct: 406 G 406


>gi|328543262|ref|YP_004303371.1| Radical SAM [polymorphum gilvum SL003B-26A1]
 gi|326413008|gb|ADZ70071.1| Radical SAM [Polymorphum gilvum SL003B-26A1]
          Length = 594

 Score = 80.8 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 43/279 (15%), Positives = 95/279 (34%), Gaps = 21/279 (7%)

Query: 105 VAGCVA---QAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVE---- 157
           V+GC++   +   E +  +   ++   G     RL ++   A  G      ++  +    
Sbjct: 121 VSGCMSMLKEMPPEMVDAQKLGISFFAGEAEELRLDDVFRDAYAGALKPIYNFMKDLPSL 180

Query: 158 DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI-EISRSLSQVVDEARK 216
           +      +         G  +   +  GC   C+FC +   +G     RS   +    R 
Sbjct: 181 EGEPTPILPSKHIQFTAGSHSSFDLGRGCPFQCSFCTIINVQGRKSRFRSPDDLERIIRD 240

Query: 217 LIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG-LVRLRYTTSHPRDMSD 275
                +    +   N    R          F D L  L E  G  ++            +
Sbjct: 241 NYAQKINRFFITDDNFARNRQWEE------FFDRLIKLREDDGFDIKFIIQVDTLCHRIE 294

Query: 276 CLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA-YEYRQIIDRIRSVRPDIAISSD 334
             I+        +  + + +++ +   L +  +R     EYR+++   R+        + 
Sbjct: 295 NFIE--KATRAGVNRVFIGLENINPDNLMAAKKRQNKITEYREMLQAWRA--HGATTYAG 350

Query: 335 FIVGFPGETDDDFRATMDLVD-KIGYAQAFSFKYSPRLG 372
           +I+GFPG+T +     ++++  ++       F  +P  G
Sbjct: 351 YIIGFPGDTKESVLRDVEIIKRELPLDLLEFFFLTPLPG 389


>gi|158425345|ref|YP_001526637.1| elongator protein [Azorhizobium caulinodans ORS 571]
 gi|158332234|dbj|BAF89719.1| elongator protein [Azorhizobium caulinodans ORS 571]
          Length = 647

 Score = 80.8 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 49/280 (17%), Positives = 103/280 (36%), Gaps = 24/280 (8%)

Query: 105 VAGCVAQAEGEEI---LRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFE 161
           V+GC+A  +G  +     R   +++  G +   RL ++L  A  G      ++  +    
Sbjct: 183 VSGCLAMLDGHAVGLDACREMGISMFAG-EAEGRLDQVLHDAASGTLEPLYNFMNDLPGI 241

Query: 162 RLSIVDG----GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI-EISRSLSQVVDEARK 216
             + V        +R  G+++      GC   C+FC +   +G     RS   V D  R+
Sbjct: 242 GGTPVPFLPKTYVSRTLGLSSSFDAGRGCPYQCSFCTIINVQGRQSRFRSADDVEDLVRR 301

Query: 217 LIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDC 276
               G+ +  +   N    R          +  +   L  +K   R+        D    
Sbjct: 302 NWAQGISKFFITDDNFARNR---------DWEAIFDRLIALKEQERIPLGLMIQVDTLCH 352

Query: 277 LIKAHGDLDV--LMPYLHLPVQSGSDRILKSMNRRHTA-YEYRQIIDRIRSVRPDIAISS 333
            I    +      +  + + +++ +   L    +R     EYR+++   ++    I   +
Sbjct: 353 NIPNFIEKAKRAGVTRVFIGLENINPDNLAEAKKRQNKITEYRKMLLAWKAQ--GIITIA 410

Query: 334 DFIVGFPGETDDDFRATMDLV-DKIGYAQAFSFKYSPRLG 372
            +I+GFP +T +  R  + ++  ++       F  +P  G
Sbjct: 411 GYILGFPADTPESIRRDIGIIQRELPLDIVEFFCLTPLPG 450


>gi|124028103|ref|YP_001013423.1| hypothetical protein Hbut_1246 [Hyperthermus butylicus DSM 5456]
 gi|123978797|gb|ABM81078.1| conserved archaeal protein [Hyperthermus butylicus DSM 5456]
          Length = 569

 Score = 80.8 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 67/364 (18%), Positives = 127/364 (34%), Gaps = 39/364 (10%)

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK----FCTFCVVP 196
           E+AR   R+ + D   E   +   IV+   N    + A +    GC +     C+FCV  
Sbjct: 155 EKARPWVRLENLDLLAEFAVKGAKIVEQHPNHGYNLVAEIETYRGCSRWISGGCSFCVTK 214

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG----KGLDGEKCTFSDLLY 252
              G    R    VV E   L   GV    L  Q      G       +  K     L  
Sbjct: 215 -LYGKPRQRKPEDVVREVEALYRAGVRHFRLGRQADILVYGSKELDTTEWPKPNPEALER 273

Query: 253 SLSEI----KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY------LHLPVQSGSDRI 302
            L  I      L+ L     +P  +     ++   +  ++ Y        L +++   R+
Sbjct: 274 LLHGIRSVAPSLITLHIDNVNPGTIVRHEEESVKAIKTIIKYHTPGDVAALGIETADPRV 333

Query: 303 LKSMNRRHTAYEYRQIIDRIRSV--------RPDIAISSDFIVGFPGETDDDFRATMDLV 354
           +   N +    E  + I+ I            P++    +F++G  GET + ++    L+
Sbjct: 334 VVENNLKTLPEETLKAIEIINRYGDVPGYNGLPELLPGINFVLGLIGETAETYKLNTQLL 393

Query: 355 DKI-----GYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLR-EQQVSFNDA 408
           +++        +    K     GT  S +  ++ +  K ER     +++       F + 
Sbjct: 394 EEVYRRGLQLRRINVRKVLVLPGTRMSLVGTKIVK--KHERYAKWFQRIALRYSKLFLER 451

Query: 409 CV--GQIIE-VLIEKHGKEKGKLVGR-SPWLQSVVLNSKNHNIGDIIKVRITDVKISTLY 464
            +  G ++  V +EK+   +G    R +     VV      +   +I V +      ++ 
Sbjct: 452 LLPRGSVLRHVYVEKYDASQGVTFARQAGSYPVVVEIPCKLDPPLVIDVVVYSHSARSVR 511

Query: 465 GELV 468
           G  +
Sbjct: 512 GMPI 515


>gi|119896562|ref|YP_931775.1| hypothetical protein azo0271 [Azoarcus sp. BH72]
 gi|119668975|emb|CAL92888.1| conserved hypothetical protein [Azoarcus sp. BH72]
          Length = 528

 Score = 80.8 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 49/233 (21%), Positives = 84/233 (36%), Gaps = 19/233 (8%)

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRK-----RGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           R++D D      +E+L+    GY+       +   A +    GC   C+FC       + 
Sbjct: 155 RILDLDELPFPAYEKLAGFPHGYHLPLFSYEKRWGATMITSRGCPYTCSFCDRTVYERLY 214

Query: 203 ISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
              S   V D  R L D  GV  I +      A         K    +L   L   K L 
Sbjct: 215 KYNSAQYVHDHIRHLRDTFGVHHINIYDDLFTAH--------KKRIHELCELLIA-KPLG 265

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
                       SD ++        LM  + + ++S    +++      T    ++ +++
Sbjct: 266 VDFNCAIRTGHTSDEMLALLKRAGALM--VSMGIESADPGMMERHKTGVTLEAVKKTVEQ 323

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
           I +    +     FI G PGET +  + T D + ++   +    K+SP  G P
Sbjct: 324 IHTA--GLRAKGLFIFGLPGETPETLKKTSDFILELDLDEMNMTKFSPMYGAP 374


>gi|332799528|ref|YP_004461027.1| Radical SAM domain-containing protein [Tepidanaerobacter sp. Re1]
 gi|332697263|gb|AEE91720.1| Radical SAM domain protein [Tepidanaerobacter sp. Re1]
          Length = 562

 Score = 80.8 bits (198), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 58/285 (20%), Positives = 112/285 (39%), Gaps = 28/285 (9%)

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +  +  +  +  K   + ++V+ G     E EE+L+R P V+ V+  +   R  ELL +A
Sbjct: 66  IEDVLYIAENIKKIKSETVIVLGGPEVSYETEELLKRVPHVDYVILSEGEKRFCELL-QA 124

Query: 144 RFGKRVV------------DTDYSVEDKFERLSIVDGGYNRK--RGVTAFLTIQEGCDKF 189
             GK  V            +   ++  ++  L+ +   Y  +       +     GC   
Sbjct: 125 FNGKMPVESIDGLAYRINDNILVNIPKEYVDLNDIPFPYIDEDLEHKLVYYETSRGCPFK 184

Query: 190 CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSD 249
           C FC +        +  L +V ++  K    GV  + L+ ++ N    + LD        
Sbjct: 185 CAFC-ISSLETHVRTADLEKVKNDLLKFTQMGVKVVKLVDRSFNCNLDRALD-------- 235

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
           LL  + +  G         +P  ++D  IKA   ++  +    + +QS +   LK ++R 
Sbjct: 236 LLDIIRQFPGNTVFHCE-INPELVNDRFIKALSGIEKQL-QFEVGIQSTNPETLKEISRT 293

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
                  + I  +++    I +  D I G P E+ + F  + D V
Sbjct: 294 PNVKRTIEGIKLLKTT--GIKLHVDLIAGLPHESFERFGYSFDEV 336


>gi|297617277|ref|YP_003702436.1| radical SAM protein [Syntrophothermus lipocalidus DSM 12680]
 gi|297145114|gb|ADI01871.1| Radical SAM domain protein [Syntrophothermus lipocalidus DSM 12680]
          Length = 586

 Score = 80.8 bits (198), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 59/295 (20%), Positives = 107/295 (36%), Gaps = 37/295 (12%)

Query: 92  NSRIKEGGDLLVVVAGCVAQAEGEE-------ILRRSPIVNVVVGPQTYYRLPELLERA- 143
               +   DL  V+ GCV    G E       +L   P ++ +V  +      ELL    
Sbjct: 69  EGVFRLTRDLKQVLPGCVVILGGPEVSFDSVDLLEAHPFIDGIVRGEGEETFLELLRSLD 128

Query: 144 ------------RFGKRVVDTDYSVEDKFERLSIVDGGYNRK----RGVTAFLTIQEGCD 187
                       R G RV+ ++    +   RL  +   Y ++     G   +     GC 
Sbjct: 129 NRGSGLVKGVTWREGNRVIYSE--DRNPITRLDSIPFPYEKETENLNGRIVYYETSRGCP 186

Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTF 247
             C++C+   TRG     +L +V ++ RKL+     EI  + +  NA             
Sbjct: 187 FNCSYCISSTTRG-VRWFTLERVKEDLRKLLQIKPKEIKFVDRTFNA--------NPKRM 237

Query: 248 SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307
            +++  L +        +  +  R +    I+    + + +    + VQS +  +L+++N
Sbjct: 238 REIMDFLIQEAKETSCHFEIAADR-LDQGTIEFLKSVPLGVFRFEIGVQSTNPEVLQAVN 296

Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           R          +  IR    +I I  D I G PGET      + + V ++     
Sbjct: 297 RPMNWELLESNVKSIRQQ-HNIFIHLDLIAGLPGETYHSVANSFNQVYRLCPDHL 350


>gi|39995351|ref|NP_951302.1| BchE/P-methylase family protein [Geobacter sulfurreducens PCA]
 gi|39982113|gb|AAR33575.1| BchE/P-methylase family protein [Geobacter sulfurreducens PCA]
 gi|298504355|gb|ADI83078.1| cobalamin-binding radical SAM domain iron-sulfur cluster-binding
           oxidoreductase [Geobacter sulfurreducens KN400]
          Length = 430

 Score = 80.8 bits (198), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 52/279 (18%), Positives = 89/279 (31%), Gaps = 22/279 (7%)

Query: 99  GDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVED 158
               VV+ G  A    +E L     V+ VV  +     P LL   + G+           
Sbjct: 82  RGKTVVMGGFHASNLPDEAL---GHVDAVVVGEGELSWPLLLADFQAGRLQRLYRSPGLL 138

Query: 159 KFERLSIVDGGYNRKRGV--TAFLTIQEGCDKFCTFCVVPYTRGI-EISRSLSQVVDEAR 215
               + +        +G   T  L    GC   C FC V    G     R +  V+ E  
Sbjct: 139 PMASIPVARREIFAGKGYLLTNTLQTTRGCPFDCEFCSVTAFYGRKYRERPVEAVLAELE 198

Query: 216 KLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSD 275
            L          +  N+ A R   L   +         LS                   +
Sbjct: 199 TLRKANS-FAFFVDDNLVADRRYALPLFRGMKGMGFKWLSHAPIDF----------AGDE 247

Query: 276 CLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR-RHTAYEYRQIIDRIRSVRPDIAISSD 334
            L++A G+   +   + +  +S     L +M +  +++  +     + R     I I   
Sbjct: 248 ELMRAAGESGCI--GMFVGFESLDQEALAAMGKVTNSSSAFLDQARKFRD--HGIGILGS 303

Query: 335 FIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
           F++G+ G+T D F   +   ++     A     +P  GT
Sbjct: 304 FVLGYDGDTPDSFGRILRFCEEARIEAAIFPILTPYPGT 342


>gi|223938126|ref|ZP_03630023.1| hopanoid biosynthesis associated radical SAM protein HpnJ
           [bacterium Ellin514]
 gi|223893170|gb|EEF59634.1| hopanoid biosynthesis associated radical SAM protein HpnJ
           [bacterium Ellin514]
          Length = 483

 Score = 80.8 bits (198), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 63/367 (17%), Positives = 118/367 (32%), Gaps = 54/367 (14%)

Query: 63  DLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSP 122
           D ++++T     K   KV   +   R              +   G  A     E L+ S 
Sbjct: 70  DHVIIHTSTPSLKNDSKVAEAIKSQR----------PGTTIGFVGAHAAVLPTETLKASQ 119

Query: 123 IVNVVVGPQTYYRLPEL-----------LERARFGKRVVDTDYSVEDKFERLSIVDGGYN 171
            ++ V   +  +   E+           L   + GK V + +  +    + L  V   Y 
Sbjct: 120 AIDWVGRKEFDFTCKEVAEGRPLSEVNGLSFWKEGKIVHNPERELIPDMDALPWVTDVYK 179

Query: 172 RKRGVTAF-----------LTIQEGCDKFCTFCVVPYTRG--IEISRSLSQV---VDEAR 215
           R   +  +           L    GC   CTFC+ P T G      RS   V   +  A+
Sbjct: 180 RDLQIEKYSIGYLKDPYLSLYTGRGCPAQCTFCLWPQTIGGHKYRVRSPENVAAEMAHAK 239

Query: 216 KLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSD 275
           KL    V E         A   +               +++    + + ++ +   +++ 
Sbjct: 240 KLFPQ-VEEFFFDDDTFTANLPR------------AREIAQKLKTLGMTWSCNSRANVNY 286

Query: 276 CLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDF 335
             IK   D    +    +  +SG+ +IL  + +     E ++     + +   + I   F
Sbjct: 287 ETIKLMKDCG--LRLFLVGYESGNQQILDRIKKGINIEEAKKFTKACKEL--GVIIHGTF 342

Query: 336 IVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQ 395
           I+G P ET +    T+     +          +P  GT    M  Q     K ++   + 
Sbjct: 343 ILGLPVETKETIEETIRYAMDLDVFSIQVSLAAPYPGTELYEMARQNGWFAKKDKTDIIH 402

Query: 396 KKLREQQ 402
               +Q 
Sbjct: 403 DDGIQQS 409


>gi|218782941|ref|YP_002434259.1| radical SAM domain protein [Desulfatibacillum alkenivorans AK-01]
 gi|218764325|gb|ACL06791.1| Radical SAM domain protein [Desulfatibacillum alkenivorans AK-01]
          Length = 479

 Score = 80.8 bits (198), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 59/376 (15%), Positives = 110/376 (29%), Gaps = 77/376 (20%)

Query: 43  RMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR---------------- 86
            +      +G          D+ +L++  +R    + ++  L R                
Sbjct: 37  ALAGYLRKKGL---------DVELLDSVALRHTTDQTLWEILKRNPQIVGFSTTIFNIAH 87

Query: 87  ----IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVV-------------- 128
               IR LK        ++  V+ G       E +  +   ++  +              
Sbjct: 88  THVIIRRLKE----IRPEIKTVMGGYGVVFPPEMLGSKLEEIDFFIKGEGEEALWKLVCA 143

Query: 129 --GPQTYYRLPELLERARFGKRVVDTDYSVEDKFERL----------SIVDGGYNRKRGV 176
             G      +P L+ R   G+   +      D                         +  
Sbjct: 144 IQGKADVAGVPGLIWR-ENGRVRQNPPSPPLDPNSLPLPALDLLPKAPYSMHPPFNIKPP 202

Query: 177 TAFLTIQEGCDKFCTFCVVPY-TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW 235
              +    GC   C FC +    R   + R   + V  A+++      E+  +     A 
Sbjct: 203 LCLVETARGCGWQCNFCSLSRDLRQKSVERVREE-VAWAKRIFKA--REVHFVDPTFTA- 258

Query: 236 RGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPV 295
                 G K  F        +  GL     +     D       A          + L +
Sbjct: 259 ------GRKRLFELTAMIKKDFPGLAWSCKSRVDLLDYEAARRMAGAG----CHIVSLGM 308

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
           +SGS ++L +MN+  T  +  + +  ++     +      + G PGETD   R TMDL++
Sbjct: 309 ESGSQKMLNAMNKAVTVEQSVRAVRALKKA--GVRSLVYIMFGAPGETDQTVRQTMDLLE 366

Query: 356 KIGYAQAFSFKYSPRL 371
           +I    A      P  
Sbjct: 367 RIRPDYALFAGLMPDP 382


>gi|86749022|ref|YP_485518.1| radical SAM family protein [Rhodopseudomonas palustris HaA2]
 gi|86572050|gb|ABD06607.1| Radical SAM [Rhodopseudomonas palustris HaA2]
          Length = 591

 Score = 80.8 bits (198), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 50/278 (17%), Positives = 98/278 (35%), Gaps = 20/278 (7%)

Query: 105 VAGCVAQAEGEEI---LRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFE 161
           V+GC++  +G+ +     R   V++  G +   R+  LL+ A  G+     +Y  +    
Sbjct: 127 VSGCLSMLDGKAVDLDACRDLGVSIFAG-EAEGRIDLLLQDAAKGRLQPLYNYLDDLPGI 185

Query: 162 RLSIVDG----GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI-EISRSLSQVVDEARK 216
             + V         R  G++       GC   C+FC +   +G     RS   V    R 
Sbjct: 186 EGTPVPFLPIANVKRTLGLSTSFDAGRGCPYQCSFCTIINVQGRKSRYRSADDVEALVRA 245

Query: 217 LIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDC 276
               GV +  +   N    +      ++  +      L E +G+                
Sbjct: 246 NWQQGVSKFFITDDNFARNKDWEAILDRLIW------LKEEQGIPLGLMIQVDTL-CHKI 298

Query: 277 LIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA-YEYRQIIDRIRSVRPDIAISSDF 335
                      +  + L ++S +   L    +R     EYR ++   R+    +   + +
Sbjct: 299 PNFVEKSKRAGVTRVFLGLESINPENLLQAKKRQNKITEYRAMLLAWRAQ--GVITLAGY 356

Query: 336 IVGFPGETDDDFRATMDLVD-KIGYAQAFSFKYSPRLG 372
           I+GFP +T     A +D++  ++       F  +P  G
Sbjct: 357 ILGFPADTPQSILADLDIIKRELPIDILEFFCLTPLPG 394


>gi|222446056|ref|ZP_03608571.1| hypothetical protein METSMIALI_01705 [Methanobrevibacter smithii
           DSM 2375]
 gi|261349405|ref|ZP_05974822.1| magnesium-protoporphyrin IX monomethyl ester cyclase
           [Methanobrevibacter smithii DSM 2374]
 gi|222435621|gb|EEE42786.1| hypothetical protein METSMIALI_01705 [Methanobrevibacter smithii
           DSM 2375]
 gi|288861768|gb|EFC94066.1| magnesium-protoporphyrin IX monomethyl ester cyclase
           [Methanobrevibacter smithii DSM 2374]
          Length = 474

 Score = 80.8 bits (198), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 52/322 (16%), Positives = 103/322 (31%), Gaps = 41/322 (12%)

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-- 140
            +GR         +   D +VV+ G        E L     V++V+  +  Y +  L+  
Sbjct: 76  TIGRALETAQVVKETLPDSIVVMGGYHPTFNFIETL-EDENVDIVIRGEGEYIMLNLVQA 134

Query: 141 ---------------ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT-------- 177
                          E     + VV+ +  +    + L          +           
Sbjct: 135 LENQSSLHDVKGIVFEDKNSKEIVVNPEAPLIQDLDELPFPALNLLPMKKYRLLDMDTHM 194

Query: 178 AFLTIQEGCDKFCTFCVVPYTRGI-EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR 236
             +    GC   C+FC      G     RS+  +VDE   L  N          +  A+ 
Sbjct: 195 TTMITTRGCPMQCSFCSSAAMHGKKIRERSVENIVDEIEYLKTN-------YDIDTIAFM 247

Query: 237 GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD-MSDCLIKAHGDLDVLMPYLHLPV 295
                 +K     +   +  +K  + + +  +   D + + L+K   +   +   + + V
Sbjct: 248 DDTFTLKKRKVMAICDEI--LKRNIEIMWGCTSRVDTLDEKLLKKMKEAGCI--TIFIGV 303

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
           +S   + L +M +  T  +          ++  I   +   +G PG+T +    T+  V 
Sbjct: 304 ESADQQQLDNMCKNTTIAKIENAFKIAHKLK--IRTIASVALGMPGDTKEIMNKTVKFVH 361

Query: 356 KIGYAQAFSFKYSPRLGTPGSN 377
           K+    A     +P  GT    
Sbjct: 362 KLKPNYAIYSLATPYPGTRFYK 383


>gi|307154279|ref|YP_003889663.1| hopanoid biosynthesis associated radical SAM protein HpnJ
           [Cyanothece sp. PCC 7822]
 gi|306984507|gb|ADN16388.1| hopanoid biosynthesis associated radical SAM protein HpnJ
           [Cyanothece sp. PCC 7822]
          Length = 478

 Score = 80.4 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 52/314 (16%), Positives = 105/314 (33%), Gaps = 44/314 (14%)

Query: 92  NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE---------- 141
            +   +     V   G       E+ L+ +PI++ V   +  Y   EL E          
Sbjct: 90  EAIKAQNPQTQVGFIGAHVAVLPEQTLQDNPILDFVCRNEFDYTCKELAEGKPFEDIKGL 149

Query: 142 --RARFGKRVV----DTDYSVEDKFERLSIVDGGYNRKRGVTAFLT-------IQEGCDK 188
             R + GK       D  +  +     L +     + ++    +L           GC  
Sbjct: 150 SYRDKQGKIQHTPERDLIHDWDAMPSVLPVYAEHLDIEKYFIGYLLHPYVSLYTGRGCPA 209

Query: 189 FCTFCVVPYTRGIEISR--SLSQV---VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
            C+FC+ P T G    R  S   V   + EA+ L  + V E           + + +   
Sbjct: 210 KCSFCLWPQTIGGHQYRAKSPEAVGRDMAEAKSLFGDKVREYMFDDDTFTIDKQRAI--- 266

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
                    ++SE    + L ++ +   ++    +K   +    +  L +  +SG+ ++L
Sbjct: 267 ---------AISEHLKRLNLTWSCNARANLDYETLKQLKN--NGLRLLLVGFESGNQQVL 315

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
             + +       ++ +     +   I +   FI+G P ET +    T+    ++      
Sbjct: 316 DGIRKGIKLEVAKKFMQNCHKL--GIKVHGTFIIGLPNETQETIDETIRFACELSPHTIQ 373

Query: 364 SFKYSPRLGTPGSN 377
               +P  GT    
Sbjct: 374 VSIAAPYPGTELYR 387


>gi|220929791|ref|YP_002506700.1| cobalamin B12-binding domain protein [Clostridium cellulolyticum
           H10]
 gi|220000119|gb|ACL76720.1| cobalamin B12-binding domain protein [Clostridium cellulolyticum
           H10]
          Length = 545

 Score = 80.4 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 55/337 (16%), Positives = 116/337 (34%), Gaps = 44/337 (13%)

Query: 99  GDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR---------- 148
            D L  + G +      EI+ + P+++ V+  +      EL+E    GK           
Sbjct: 89  PDTLFCIGGTLPTYNFREIMEQIPLIDFVIRGEGELTWLELVEHLNKGKSLENIEGLIYR 148

Query: 149 -----VVDTDYSVEDKFERLSIVDGGYNRKRGV-TAFLTIQEGCDKFCTFCVVPYTRGIE 202
                +V+   ++ +    L        ++  + TA ++   GC   C+FC         
Sbjct: 149 STEGIIVNPPRNLIENIGDLPWPARDILKENKLKTAVISSSRGCTGKCSFCASQLFWKKW 208

Query: 203 ISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
             R    VVDE   ++   GV     +     ++   G++ ++             + ++
Sbjct: 209 RGREPIDVVDEMEYIVKEYGVRTFNFID---GSFEDPGINLKRVRGI--------AEEII 257

Query: 262 RLRYTTSHPRDMSDC--------LIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
           R R   S+  D+           LI       +      +  +S ++  LK   +  +  
Sbjct: 258 RRRLNISYFVDLRAEFFRKADEALIDLLKKSGLCGAC--IGYESANEYDLKFYQKYASVS 315

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
           +  +  +  R    ++     FI   P  T +  R+ ++ +++  +A       S     
Sbjct: 316 DNVRAAEACRKYEINVVPG--FINFNPYSTFEGLRSNIEFMEEYQFANIIHLVISRVKIF 373

Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACV 410
            G+ +     E +K + LL L  +  E    F D  +
Sbjct: 374 TGTVLY----EKIKEDNLLLLSPEYNEYGYKFVDERI 406


>gi|163797712|ref|ZP_02191660.1| Radical SAM domain protein [alpha proteobacterium BAL199]
 gi|159177060|gb|EDP61623.1| Radical SAM domain protein [alpha proteobacterium BAL199]
          Length = 581

 Score = 80.4 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 40/219 (18%), Positives = 77/219 (35%), Gaps = 16/219 (7%)

Query: 172 RKRGVTAFLTIQEGCDKFCTFCVVPYTRGI-EISRSLSQVVDEARKLIDNGVCEITLLGQ 230
           R       L I  GC   C+FC +    G     R+L+ +    R+        I +   
Sbjct: 206 RTFDRYYGLEIGRGCPFVCSFCTIINFHGRVMRHRTLADIEAYLRECAAGDGRTILITDD 265

Query: 231 NV-NAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMP 289
           N   +   + +      F+ L   L  +   V ++      R             +  + 
Sbjct: 266 NFARSPIWRDV---CAIFTRLRQELG-VDWDVSIQVDALAVRIDGF----VEACQEAGVK 317

Query: 290 YLHLPVQSGSDRILKSMNRR-HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFR 348
            + L ++S     LK+  +  +  ++ R ++   R     + I +  IVG P +T +   
Sbjct: 318 RIFLGMESVRADNLKAAGKGQNKVHQLRDMVMTWRRA--GVIIYAGMIVGLPNDTPERIA 375

Query: 349 ATMDLV-DKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
             + ++ D+I       F Y+P  G   ++    V E V
Sbjct: 376 EDVRVLQDEIPVDILSPFLYTPLPG--SADHKRMVAEGV 412


>gi|108763990|ref|YP_632765.1| putative methyltransferase [Myxococcus xanthus DK 1622]
 gi|108467870|gb|ABF93055.1| putative methyltransferase [Myxococcus xanthus DK 1622]
          Length = 559

 Score = 80.4 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 63/385 (16%), Positives = 121/385 (31%), Gaps = 67/385 (17%)

Query: 21  CIVPQRFFVKSYGCQMN--VYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAE 78
             + +R    +Y   +N   ++  R+ ++                + +  T ++      
Sbjct: 89  SFLGRRGHDVTY---LNLFQHEKERLAELLAQN---------PRTVAITTTFYVLNDPVI 136

Query: 79  KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNV--------VVGP 130
           ++  F+ +             D+ ++V G +              V +        VV  
Sbjct: 137 EMVQFIRQ----------HNPDVRIIVGGPLVSNHHRRYEGNELAVVLDDLGADIYVVES 186

Query: 131 QTYYRLPELLERARFGKR---VVDTDYSVEDKF-------------------ERLSIVDG 168
           Q    L  +L+R + G+    V +  Y  E                      E +    G
Sbjct: 187 QGELTLSRVLDRLKAGQELSDVPNLIYPAEGGPVRAGRYRINPPQAESNSLDENIIDWRG 246

Query: 169 GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLL 228
                 G T        C   C+FC  P   G      +  V  E   + + G   +  +
Sbjct: 247 MAESPLGPTLQTRTARSCAYSCSFCAYPMRAGSLTLAGMDAVARELDAMAELGTQNVVFI 306

Query: 229 GQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLM 288
               N             F +L   L E +      ++     +  D  +          
Sbjct: 307 DDTFNVP--------LKRFKELCRLLIERRYGFN-WFSYFRCSNSDDEAVDLAAQSG--C 355

Query: 289 PYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFR 348
             + L ++SGS RIL +MN+  T  +Y   + R+ +    I   + FI+GFPGET++   
Sbjct: 356 RGVFLGIESGSPRILANMNKAATVEKYVSGMKRLHA--HGILTFASFILGFPGETEETVE 413

Query: 349 ATMDLVDKIGYAQAFSFKYSPRLGT 373
            T+  + +       +  +    GT
Sbjct: 414 ETLAFIQETRPDYYRTQLWYCEPGT 438


>gi|307153827|ref|YP_003889211.1| Radical SAM domain-containing protein [Cyanothece sp. PCC 7822]
 gi|306984055|gb|ADN15936.1| Radical SAM domain protein [Cyanothece sp. PCC 7822]
          Length = 539

 Score = 80.4 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 50/340 (14%), Positives = 110/340 (32%), Gaps = 46/340 (13%)

Query: 57  NSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEE 116
                AD+++++  HI           + RI  L ++  K        V+GC       E
Sbjct: 82  KDYQWADVVIVSGMHI-------QRPQINRINQLAHAEGKITVIGGPSVSGC------PE 128

Query: 117 ILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGY---NRK 173
                 ++++         + + ++R    +      +   ++          Y      
Sbjct: 129 YYPDFDLLHIGELGDATDEMIKYIDRHHQ-RPAAQIRFETRERLPLHEFPIPAYHLLKLN 187

Query: 174 RGVTAFLTIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVCEITLLGQNV 232
           +   A +    GC   C FC +P   G     ++  QV+ E   +I  G         N 
Sbjct: 188 QYFIASVQFSSGCPYQCEFCDIPALYGRNPRLKTPQQVLAELDAIIAAG---------NP 238

Query: 233 NAWRGKGLD--GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY 290
            A      +  G +   ++LL  L  I    R  Y      + +  L         ++  
Sbjct: 239 GAVYFVDDNFAGNRRALAELLPHL--IDWQKRNGYPVQFACEATLNL----AQSPKILEM 292

Query: 291 L--------HLPVQSGSDRILKSMNRRHT-AYEYRQIIDRIRSVRPDIAISSDFIVGFPG 341
           +           +++   + L++++++H  +    + I  + S    + + S  I+GF  
Sbjct: 293 MREAYFGTVFCGIETPEPQALQAISKQHNLSMPILEAIKTLNSY--GLEVVSGIIIGFDT 350

Query: 342 ETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +T +     ++ + +                TP    LE+
Sbjct: 351 DTPETAERILEFIRRSQIPMLTINLLYALPKTPLWERLER 390


>gi|312890526|ref|ZP_07750062.1| Radical SAM domain protein [Mucilaginibacter paludis DSM 18603]
 gi|311296984|gb|EFQ74117.1| Radical SAM domain protein [Mucilaginibacter paludis DSM 18603]
          Length = 512

 Score = 80.4 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 79/228 (34%), Gaps = 13/228 (5%)

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           K + +      D  +  S        K   +  ++   GC   C +C  P       SRS
Sbjct: 199 KNLDELPLPAWDLVDMESYRQSWLKSKGYFSLNMSTTRGCPFKCNWCAKPIYGSRYNSRS 258

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL-VRLRY 265
              VV E + L D          Q  + W    + G K  +      L + + L    + 
Sbjct: 259 PEHVVKELKLLRDQY--------QMDHIWFCDDIFGLKPGWLIEFARLVKQEDLNFSYKI 310

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
            T     + D  IKA            +  +SGS RIL +M++  T  +       ++  
Sbjct: 311 QTRADLLLQDDQIKALAASG--CDNAWIGAESGSQRILDAMDKGTTIEQIYTATRLLKKN 368

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
              I  S     G+ GET +D   T+ +++++   +       P  GT
Sbjct: 369 --GIKPSFFIQFGYLGETREDIALTIQMINELLPYEIGISVSYPLPGT 414


>gi|313127178|ref|YP_004037448.1| hypothetical protein Hbor_24450 [Halogeometricum borinquense DSM
           11551]
 gi|312293543|gb|ADQ68003.1| uncharacterized Fe-S oxidoreductase [Halogeometricum borinquense
           DSM 11551]
          Length = 575

 Score = 80.4 bits (197), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 63/398 (15%), Positives = 124/398 (31%), Gaps = 48/398 (12%)

Query: 111 QAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG--KRVVDTDYSVEDKFERLSIVDG 168
            A  +E+ RR+   + +          +L++    G   R  D +       +   +V+ 
Sbjct: 121 NAGAQEMERRNLDYDYLAMADVEAAAYDLVDSGLEGFNNRYRDNEELDRWAAKGAFVVEQ 180

Query: 169 GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLL 228
             N    +   +    GC   C+FC  P   G    R+   VV E   L   G     L 
Sbjct: 181 HPNHPDYLICEMETSRGCAYRCSFCTEP-MYGNPAFRTAESVVREVENLSARGAKHFRLG 239

Query: 229 GQ-NVNAWRGKGLDGEKCTFSDLLYSLSEIKG-------LVRLRYTTSHPRDMSDCLIKA 280
            Q ++ A+ G G          L   + E+               T     + +   I+ 
Sbjct: 240 RQADILAFGGDGEAPNPDALRRLYGGIREVAPDLQTLHLDNMNPITVVKWPEKARECIRI 299

Query: 281 HGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS---------------- 324
             + +         ++S    + ++     TA E  + +  +                  
Sbjct: 300 IAEHNTPGDTAAFGLESADPVVQEANTLNVTADECFEAVKIVNEEAGWRPGETPDNAPTH 359

Query: 325 ------VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA------QAFSFKYSPRLG 372
                   P +    + + G  GE ++ F      + ++ Y       +    +     G
Sbjct: 360 GPDASNRLPKLLPGINLLHGLKGEREETFEHNKRFLHRV-YDAGLMVRRINIRQVMAFEG 418

Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACV---GQIIE-VLIEKHGKEKGKL 428
           T  ++    + +  K  R    +K++RE+        V   G ++  V +E    + GK 
Sbjct: 419 TEMADEGANIAKEHKK-RFQAYKKQVREEIDQPMLRRVAPAGTVLPNVHLE--YHQDGKT 475

Query: 429 VGR-SPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYG 465
            GR       +V       +G  I V + D    ++ G
Sbjct: 476 FGRQLGTYPLLVGIPGERELGQTIDVAVVDHGYRSVTG 513


>gi|170738464|ref|YP_001767119.1| radical SAM domain-containing protein [Methylobacterium sp. 4-46]
 gi|168192738|gb|ACA14685.1| Radical SAM domain protein [Methylobacterium sp. 4-46]
          Length = 705

 Score = 80.4 bits (197), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 75/224 (33%), Gaps = 25/224 (11%)

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTA----FLTIQEGCDK-FCTFCVVPYT 198
           R G RVV T   VED     +    G    R ++      + + +GC    C+FC +P+ 
Sbjct: 269 RAGDRVVATPTRVEDYAANPTPDFDGLPLDRYLSPHLVLPVMLGKGCYHDECSFCDIPFI 328

Query: 199 R----GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL 254
                     R    V ++   L +   C   LL       R             +  +L
Sbjct: 329 NRISPKRYRLRRPETVAEDIDHLAERHGCRHFLLADEALPPRV---------LGRVAEAL 379

Query: 255 SEIKGLVRLRYTTSHPRD--MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
            E +G     ++     +   +  L        V M  L+  ++S     L  M +    
Sbjct: 380 -EARGRTDCVFSGYARLEPGFTRDLCDRLA--RVGMRRLYFGLESADQDTLDRMRKGIRV 436

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
                ++   R     I      IVGFPGET+   R T+   ++
Sbjct: 437 EHAAPVLRHCREA--GIRFHVFSIVGFPGETEASARRTLAFFEE 478


>gi|78187362|ref|YP_375405.1| Elongator protein 3/MiaB/NifB [Chlorobium luteolum DSM 273]
 gi|78167264|gb|ABB24362.1| Elongator protein 3/MiaB/NifB [Chlorobium luteolum DSM 273]
          Length = 478

 Score = 80.4 bits (197), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 46/281 (16%), Positives = 86/281 (30%), Gaps = 21/281 (7%)

Query: 97  EGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK-RVVDTDYS 155
               + VV+ G       E         +V+V  +      E+L   R G+ R      +
Sbjct: 111 RHRGVKVVLGGPYVTLFAERCR---EHADVLVCGEADDLWREVLLDLRKGELRAEYRQET 167

Query: 156 VEDKFERLSIVDGGYNRKRGVTA-FLTIQEGCDKFCTFCVVPYTRG-IEISRSLSQVVDE 213
             D      +     + K   T   +    GC   C FC V    G     R +  V  E
Sbjct: 168 PPDLSLSRPVSKSMLDIKSYFTTNVVQTTRGCPYSCDFCTVHVMNGHRLRHRPVKDVQRE 227

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
               +         L   +NA      +         +  + +          ++     
Sbjct: 228 VEGFLKEDRRIFFFLDDTINADERYARELFNGLIPLGIRWVGQ----------STTALGE 277

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR-PDIAIS 332
           +  L++           L + ++S  D    + ++ H      + +  I+++R   I + 
Sbjct: 278 NPALLEVFARSG--CGALLVGIESIGDGSNHAHHKFHNPAS--RQVASIKAIRDAGICVY 333

Query: 333 SDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
             FI G  G+T D  R   + +++ G          P  GT
Sbjct: 334 GSFIYGLDGDTLDMPRRIEEFIEETGVDVPGINLLRPIPGT 374


>gi|309792068|ref|ZP_07686542.1| radical SAM domain-containing protein [Oscillochloris trichoides
           DG6]
 gi|308225875|gb|EFO79629.1| radical SAM domain-containing protein [Oscillochloris trichoides
           DG6]
          Length = 608

 Score = 80.4 bits (197), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 63/348 (18%), Positives = 117/348 (33%), Gaps = 50/348 (14%)

Query: 55  RVNSMDDADLIVLNTCHIREKAAEKVYSFL-----GRIRNLKNSRIKEGGDLLVVVAGCV 109
             +   DAD++      I   A + +   L      R   +     +    +LV+V G  
Sbjct: 51  LADHAGDADVVA----AIVAHAPDLLAFSLYTWNSERSLAIAERVKEHLPHVLVLVGGPE 106

Query: 110 AQAEGEEILRRSPIVNV-VVG------------------PQTYYRLPELLERARFGKRVV 150
            Q +   IL   P V++ VVG                  P    R+P ++     G    
Sbjct: 107 VQRDNPWILH-HPAVDLAVVGAGEATFVEILEWWQGPRDPAALLRIPGVVRCCPGGAPRF 165

Query: 151 DTDYSVEDKFERLSIV--DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE---ISR 205
               S      ++      G  +   G    + I   C   C++C      G      S 
Sbjct: 166 APPRSPLPDLMQIPSPYLSGWLDLPLGSLQPIEISRFCPYTCSYC----LYGRHSEQTSF 221

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           SL +V+ E     + G+  + L+  N+N             F  L+++L+E+    R + 
Sbjct: 222 SLERVLAEIAWGRERGIERVHLVEANLNLQ---------PIFWPLMHALAELNAD-RQQT 271

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
             +  R            +   +  + + +QS +   L+++ R      +   ++R+ + 
Sbjct: 272 FYAELRAEYVDAASVAALVAANVTVVEVGLQSANPAALRAIRRHTDLERWAAGVERLMAA 331

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
              I +  D I+G PG+       T   +   G A   +F      GT
Sbjct: 332 --GIEVLLDVILGLPGDDAAGVALTRAFLHAHGLAHYDTFMLQVLPGT 377


>gi|78222910|ref|YP_384657.1| radical SAM family protein [Geobacter metallireducens GS-15]
 gi|78194165|gb|ABB31932.1| Radical SAM [Geobacter metallireducens GS-15]
          Length = 469

 Score = 80.4 bits (197), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 52/328 (15%), Positives = 109/328 (33%), Gaps = 48/328 (14%)

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           RI        +   D  ++V G  A A  + +  +  +++ +        +  L E    
Sbjct: 77  RIIATAREVRRVSPDAFILVGGHAAAAFPDPL--KDNVIDAICLDDGEEIITALAEALET 134

Query: 146 GKRVVDTDYSVEDKFERLS----------------IVDGGYNRKRGVTAFLTI------- 182
           G+ + D    +    +                         +R R     L         
Sbjct: 135 GRPLTDIPALLFRTGDGWVETPPLSDQTCLDLVPLPARHLVDRHRNNYHCLLFKPVWLIE 194

Query: 183 -QEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL 240
              GC   C+FC V    G     RS++ VV++     D+       +  ++  +     
Sbjct: 195 TARGCPHRCSFCSVWQLYGRSVRERSIATVVEDFATAGDS-----IFVADDLFWY----- 244

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHL--PVQSG 298
              +    +L  +L + +G+ +         D+             L     +   +++ 
Sbjct: 245 --NRERSIELAEALKK-RGVHKRWILVQTRTDLICRSADIMAAWRPLAKDFDIFLGLEAA 301

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFP-GETDDDFRATMDLVDKI 357
           SD+ L  +++     E  + +   R ++  I    +F+VG   GE  ++FR   D V + 
Sbjct: 302 SDKGLSGLDKDAGLAESIEGVRIARELKYGIN--GNFLVGHDWGE--EEFRELWDFVAQY 357

Query: 358 GYAQAFSFKYSPRLGTPGSN-MLEQVDE 384
           G  +A    ++P  GT     M  ++ +
Sbjct: 358 GLQRAGFTIHTPLPGTDHYREMKPRIPD 385


>gi|296132076|ref|YP_003639323.1| Radical SAM domain protein [Thermincola sp. JR]
 gi|296030654|gb|ADG81422.1| Radical SAM domain protein [Thermincola potens JR]
          Length = 500

 Score = 80.4 bits (197), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 68/372 (18%), Positives = 123/372 (33%), Gaps = 49/372 (13%)

Query: 39  YDSLRMEDMFFSQGYERVNSMDDA---DLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRI 95
           ++   +E       Y  + ++  A   D++ ++      +    +Y FL +++N      
Sbjct: 43  HEVEIVEGYLDKLSYAEIKNIVSAWKPDVLGVH-MVYHWQTDRALYGFLEQVKNA----- 96

Query: 96  KEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTD-- 153
             G    +   G        +IL+  P ++ V+  +      EL E        V+    
Sbjct: 97  --GLTSYITAYGFYPTIAYADILQECPAIDSVIVGEHEITFVELAEALSCRVSSVNLPGL 154

Query: 154 ------------YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG- 200
                         V    +RL          R     L    GC   CTFC +    G 
Sbjct: 155 AVRDSTGVQYRRREVLADLDRLPTPVRTEAMYRLPEVNLQGSRGCYGRCTFCYINPFYGA 214

Query: 201 --IEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257
                 RS   +V E   +I   GV +      N     G G  G++         L+ +
Sbjct: 215 GSRWRGRSPDNIVAEIDGIIAERGVRDFYFTDPNF---FGPGQRGQERAL-----RLAAL 266

Query: 258 KGLVRLRYTTS-HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
               ++R+       D+ D  I A  +    + ++ + ++SG D  LK MN+  T  +  
Sbjct: 267 LKPRQIRFGIEGRVNDIHDETIAALREAG--LRHILIGLESGKDSSLKRMNKMTTVAQNE 324

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ-------AFSFKYSP 369
           + I  +R     +  +  FI+  P  T +D R   + + +                    
Sbjct: 325 EAIRILRKN--GLEPNVGFIMFEPDSTLEDIRGNFEFLLRNDLLHNLPVTANVLYHHQIV 382

Query: 370 RLGTPGSNMLEQ 381
             GTP    L+Q
Sbjct: 383 LKGTPAFQHLQQ 394


>gi|167037376|ref|YP_001664954.1| radical SAM domain-containing protein [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|167040044|ref|YP_001663029.1| radical SAM domain-containing protein [Thermoanaerobacter sp. X514]
 gi|256752913|ref|ZP_05493747.1| Radical SAM domain protein [Thermoanaerobacter ethanolicus CCSD1]
 gi|300914128|ref|ZP_07131444.1| Radical SAM domain protein [Thermoanaerobacter sp. X561]
 gi|307724636|ref|YP_003904387.1| Radical SAM domain-containing protein [Thermoanaerobacter sp. X513]
 gi|320115790|ref|YP_004185949.1| Radical SAM domain-containing protein [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
 gi|166854284|gb|ABY92693.1| Radical SAM domain protein [Thermoanaerobacter sp. X514]
 gi|166856210|gb|ABY94618.1| Radical SAM domain protein [Thermoanaerobacter pseudethanolicus
           ATCC 33223]
 gi|256748210|gb|EEU61280.1| Radical SAM domain protein [Thermoanaerobacter ethanolicus CCSD1]
 gi|300889063|gb|EFK84209.1| Radical SAM domain protein [Thermoanaerobacter sp. X561]
 gi|307581697|gb|ADN55096.1| Radical SAM domain protein [Thermoanaerobacter sp. X513]
 gi|319928881|gb|ADV79566.1| Radical SAM domain protein [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
          Length = 562

 Score = 80.4 bits (197), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 56/314 (17%), Positives = 109/314 (34%), Gaps = 29/314 (9%)

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLP--ELLE 141
           +    NL  +  K    +++V+ G  A  + + +L +  I  +V+G          E LE
Sbjct: 66  IEIALNLAENIKKILPKVILVLGGPEASYDVDNLLSKGFIDYIVLGEGEIAFKELLEALE 125

Query: 142 RARFGKRVVDTDYSVED-----------KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190
             R  K V    Y V+                + I             +     GC   C
Sbjct: 126 GKRDIKEVAGISYKVDGQIVIQPQKDYVNLNEVPISYEEEEDLSNKLVYYETSRGCPFKC 185

Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDL 250
            +C+           SL +V  + +  +D  V  + L+ ++ N+         +    ++
Sbjct: 186 AYCL-SSIDNKLRYESLEKVEGDLKWFVDKNVKILKLIDRSFNS--------NRKRAREI 236

Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
           L  + +I G         +P  +    I+    L+       + VQ+ +   LK ++R  
Sbjct: 237 LNIMKKIGGDTVFHCEV-NPELVDKEFIEELKGLEK-RIQFEVGVQTTNKNSLKKISRIT 294

Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370
              +  + I  +R     I +  D I G P ++ + F    D V  +   +         
Sbjct: 295 AVEKALRGIKLLREA--GIKLHVDLIAGLPEDSFETFSKAFDDVYNLKPDEIQLGFLKVL 352

Query: 371 LGTPGSNMLEQVDE 384
            GTP   ++ +V+E
Sbjct: 353 KGTP---LMRKVEE 363


>gi|323140945|ref|ZP_08075857.1| B12 binding domain protein [Phascolarctobacterium sp. YIT 12067]
 gi|322414548|gb|EFY05355.1| B12 binding domain protein [Phascolarctobacterium sp. YIT 12067]
          Length = 570

 Score = 80.4 bits (197), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 54/300 (18%), Positives = 100/300 (33%), Gaps = 26/300 (8%)

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
            L     K      +V+ G     + E I    P  + +V  +      ELL+    G  
Sbjct: 73  KLIRMLRKLRPQAAIVIGGPEVAFDAERIFAELPQADYIVQGEGELVFSELLQYLAGGGA 132

Query: 149 VVDTDYSVEDK----------FERLSIVDGGYNRKRGVTAFLTI-----QEGCDKFCTFC 193
           V       E +           E +S++   Y     + A   I       GC   C +C
Sbjct: 133 VSQHIAYREGEQVNLNGGITVIEDMSLLPFPYPDLEKMLAEHKIVYYECTRGCPFNCAYC 192

Query: 194 VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS 253
           +   +R     R L  V+ +  + I  GV  +  +         +  + ++  F  ++  
Sbjct: 193 LSSISRS-VRKRPLELVLRDLDRFIAAGVPLVKFVD--------RTYNLDEKYFLPMMQH 243

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
           L++        +       +S+ ++     +      L + +QS     LK++NR+    
Sbjct: 244 LAQADTNATFHFEIKADI-LSERVMDFLATVPKGRFQLEIGIQSTHQPTLKAINRQDNWE 302

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
           +    + R+ S   ++ I  D I G P E    F  + D V  +G             GT
Sbjct: 303 KLAANVKRLLS-FGNMHIHVDLIAGLPYEDLPTFAKSFDDVYGLGADMLQLGFLKVLPGT 361


>gi|288926556|ref|ZP_06420474.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Prevotella buccae D17]
 gi|288336698|gb|EFC75066.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Prevotella buccae D17]
          Length = 372

 Score = 80.4 bits (197), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 55/232 (23%), Positives = 91/232 (39%), Gaps = 20/232 (8%)

Query: 186 CDKFCTFC-VVPYTRGIEISRSLSQVVDEARKLIDN--GVCEITLLGQNVNAWRGKGLDG 242
           C+  C +C     TR     R    +  E         G  +   LG    +  G  L G
Sbjct: 11  CESRCIYCGFYSTTRTGLRRRYADALCREMEMRRREMPGPPDTIYLGGGTPSTLGGELLG 70

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTT-SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
                  +   + ++ G      T   +P D++D    A   L   +  + +  Q+ SD 
Sbjct: 71  R------VFDYIYKVYGPCEGEITLECNPDDVTDDFCHALVRLP--VNRVSMGAQTFSDA 122

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIA-ISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
            L+ ++RRH+A E    ++R+R    DI  IS D + GFPGET  D++  +D   ++   
Sbjct: 123 RLRFLHRRHSAAEVVTAVERLRRA--DIRNISLDLMFGFPGETPADWQTDIDNALQLHSE 180

Query: 361 QAFSFKYSPRLGTPGSNML-----EQVDENVKAERLLCLQKKLREQQVSFND 407
              ++      GTP   ML     E++DE+V       L  +L        +
Sbjct: 181 HLSAYSLMYEEGTPLHRMLTRGEVEEIDEDVSLHMYDMLIDRLTAVGYEHYE 232


>gi|77918109|ref|YP_355924.1| Fe-S oxidoreductase [Pelobacter carbinolicus DSM 2380]
 gi|77544192|gb|ABA87754.1| Fe-S oxidoreductase [Pelobacter carbinolicus DSM 2380]
          Length = 569

 Score = 80.4 bits (197), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 67/361 (18%), Positives = 121/361 (33%), Gaps = 45/361 (12%)

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
            L ++       L +++ G     +G E+  R P +  VV  +    L  LL+     K 
Sbjct: 77  ELADALAVARPGLRIILGGPEVSFDGPELFARHPGIAAVVRGEGETPLRALLDAWLHEKS 136

Query: 149 VVDTDYSVEDKFERLSIVDGGY-----------------NRKRGVTAFLTIQEGCDKFCT 191
             +         ER+     G                  +  RG+  +L    GC   C 
Sbjct: 137 PENIARLSWRDGERVHSGPDGPLLAELDDIPSPFNLDLVDLSRGLV-YLETSRGCPYRCA 195

Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLL 251
           FC +        S S+ ++  +   LI   V  I L+ +  N       D E+    D+ 
Sbjct: 196 FC-MSALDTRVRSYSMPRIQTDLLYLITREVPCIKLVDRTFN------YDAERAR--DIF 246

Query: 252 YSLSEIKGLVRLRY-TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
             + E     R  +   +H  D +   +      D       + VQS   + L++++R  
Sbjct: 247 QFILENNRTSRFHFEIGAHLLDDATLSLLEQAPPDTF--QFEIGVQSTLPKTLEAISRET 304

Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370
           +  +    + R+R    +I +  D I G PG+    F  ++D V ++             
Sbjct: 305 SLEKLEANVLRLRRA-DNIHLHLDLIAGLPGQGSASFLESVDRVMELRPHHLQLEPVKLL 363

Query: 371 LGTP--------GSNMLEQVDENVKA------ERLLCLQKKLREQQVSFNDACVGQIIEV 416
            G P        G          V        E L  L+   R   +++N   + + +E+
Sbjct: 364 PGAPLRRNAASLGLRFDPHPPYGVLKTPDLTFEELERLRGIGRLLDLTWNAERLQEFLEL 423

Query: 417 L 417
           L
Sbjct: 424 L 424


>gi|222053174|ref|YP_002535536.1| radical SAM protein [Geobacter sp. FRC-32]
 gi|221562463|gb|ACM18435.1| Radical SAM domain protein [Geobacter sp. FRC-32]
          Length = 447

 Score = 80.4 bits (197), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 57/326 (17%), Positives = 106/326 (32%), Gaps = 30/326 (9%)

Query: 58  SMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEI 117
           + D AD  +++   +    A  VY    R+R +            V++ G    A  +E 
Sbjct: 54  NPDQADADLISF-TVLTPQAPWVYRMADRLRQMGRQ---------VLLGGIHVTALPDEA 103

Query: 118 LRRSPIVNVVVGPQTYYRLPELLERARFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGV 176
            R     + +V  +       LL+ A   + + V      E K     I +        V
Sbjct: 104 GR---HADAIVLGEAEEIWGALLDDAEKRRLKPVYQGGFPELKGLSRPITNLWK--TNYV 158

Query: 177 TAFLTIQEGCDKFCTFCVVP-YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW 235
             +     GC   CTFC V  +  G   +R + +VV E      +       +  NV   
Sbjct: 159 YGYFQTSRGCPHRCTFCSVHEFFGGRVRTRPIDEVVAEI---AQSKRRLFWGIDDNV--- 212

Query: 236 RGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPV 295
            G  +D     + ++  SL    G            D               +  + +  
Sbjct: 213 WGVNMDYTIELYLEMGKSLR---GKSWFGSGDLVSVDHPRAGELLTNARKAGLTAVLVGW 269

Query: 296 QSGSDRILKSMNR-RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           +S +   L+          + R  I +IR     I +    ++G   +  +D+   + L 
Sbjct: 270 ESNNIGSLEEYKAVTKQGRQRRDAIKKIRD--HGIEVMLFMMIGGRQDRREDYEGILKLC 327

Query: 355 DKIGYAQAFSFKYSPRLGTPGSNMLE 380
           D++  + A     +P  GT    + +
Sbjct: 328 DELKVS-AHPVMTTPFPGTQLYELYK 352


>gi|119358045|ref|YP_912689.1| radical SAM domain-containing protein [Chlorobium phaeobacteroides
           DSM 266]
 gi|119355394|gb|ABL66265.1| Radical SAM domain protein [Chlorobium phaeobacteroides DSM 266]
          Length = 498

 Score = 80.4 bits (197), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 61/334 (18%), Positives = 118/334 (35%), Gaps = 35/334 (10%)

Query: 56  VNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGE 115
            + +  AD+  ++   +++++A  V +            +     L VV  G +  +E E
Sbjct: 60  ADDLQWADMAFVSAMAVQQESARNVIA------------LCNKTGLNVVAGGPLFTSEHE 107

Query: 116 EILRRSPIVNVVVGPQTYYRLPELLERARFG-KRVVDTDYSVEDKFERLSIVDGGYNRKR 174
           +     P V+  V  +    L   L+    G  + + T     D  +         + K+
Sbjct: 108 DF----PTVDHFVLNEAELTLQPFLDDLLAGIPKKIYTSNLFPDLTKTPVPQWHLLDIKK 163

Query: 175 GVTAFLTIQEGCDKFCTFCVVPYTRG-IEISRSLSQVVDEARKLIDNG-VCEITLLGQNV 232
             +  L    GC   C FC V    G    +++  Q++ E   L   G +  I  +  N 
Sbjct: 164 YASMALQFSRGCPYQCDFCNVTALLGHKIRTKTSDQIIAELDGLHKMGWLDSIFFVDDNF 223

Query: 233 NAWRGKGLDGEKCTFSDLLYSLSEIKGLVR----LRYTTSHPRDMSDCLIKAHGDLDVLM 288
            A +            DLL  L   +   R         S        L+     +    
Sbjct: 224 IAHKS-------YLKKDLLPRLIAWQKNNRTTTKFYTECSINLADDPELLDLM--VLAGF 274

Query: 289 PYLHLPVQSGSDRILKSMNRRH-TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDF 347
             + + +++  D  L++  ++H T+ +  + + +I+     I +   FIVGF  +T   F
Sbjct: 275 TQVFIGIETPDDTALQACGKQHNTSRDMLENVRKIQQA--GIEVQGGFIVGFDSDTPSIF 332

Query: 348 RATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           R  +D + K G   A         GT     +++
Sbjct: 333 RKQIDFIQKSGIVTAMVGVLQALPGTKLYERMQK 366


>gi|254167162|ref|ZP_04874015.1| radical SAM domain protein [Aciduliprofundum boonei T469]
 gi|197624018|gb|EDY36580.1| radical SAM domain protein [Aciduliprofundum boonei T469]
          Length = 523

 Score = 80.4 bits (197), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 58/357 (16%), Positives = 121/357 (33%), Gaps = 36/357 (10%)

Query: 138 ELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKF----CTFC 193
           ++L       R+ + D           I+    +    +   +    GC ++    C+FC
Sbjct: 120 DILTENFTHHRLHNLDEWNRWLKLGTYIIKEHPDYPEPLIVEIETFRGCSRYLSGGCSFC 179

Query: 194 VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK-------CT 246
           V P   G  + R +  +V+E R     GV    + GQ           G+K         
Sbjct: 180 VEP-LYGKPMFREIDDIVEEVRIFSYLGVRNFRIGGQTCIYSYKAYGIGKKEIPQPNVHA 238

Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLH------LPVQSGSD 300
             DL   L++I   V L    ++P  ++    +A    ++L+ Y          ++S   
Sbjct: 239 LEDLFSKLNKIPHRV-LHVDNANPAVLASYPEEAKKITEILVKYTSPGNVVAFGMESADL 297

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSV--------RPDIAISSDFIVGFPGETDDDFRATMD 352
            ++K+ N   T       I+ I  +         P +    +FI G   E+ D +   + 
Sbjct: 298 EVIKANNLNSTPEMVMNAIEIINEIGAVRGENGMPKLLPGLNFICGLWNESKDTYAMNLK 357

Query: 353 LVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACV-- 410
            + ++        + + R     +++  +     + E     ++   + +       V  
Sbjct: 358 FLKEVLAKGYLLRRINIRQ---VASVRNKFKLKYRHECWKFRREVREKIEKIMLKRIVPI 414

Query: 411 GQII-EVLIEKHGKEKGKLVGRSPW-LQSVVLNSKNHNIGDIIKVRITDVKISTLYG 465
           G ++ +V +E          GR P     VV+      +G  + V++      +L  
Sbjct: 415 GTVLKDVYLE--VHRGNYTFGRQPGSYPLVVVLPYFSEVGKYVNVKVVGYGERSLTA 469


>gi|78186139|ref|YP_374182.1| magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative
           cyclase [Chlorobium luteolum DSM 273]
 gi|78166041|gb|ABB23139.1| Magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative
           cyclase [Chlorobium luteolum DSM 273]
          Length = 546

 Score = 80.4 bits (197), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 53/357 (14%), Positives = 109/357 (30%), Gaps = 48/357 (13%)

Query: 42  LRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDL 101
             M D    +  E +   +  D+++          A  +   + + +++     K   ++
Sbjct: 45  DAMADDLPDEQIEEIIRANKPDVVM----------ATNITPSIFKAQDIMKIAKKVDKNI 94

Query: 102 LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG--------------- 146
             ++ G  +     ++L  +P  + VV  +       L++    G               
Sbjct: 95  RTIMGGIHSTFMYPQVLSEAPETDYVVRGEGEEIAVNLIKAIAAGNDRETRAEITGIAYI 154

Query: 147 ----KRVVDTDYSVEDKFERLSIVDGGYNRKRGVT-------AFLTIQEGCDKFCTFCVV 195
               K      + V +  + L+     Y+  + +        A      GC   CTFC  
Sbjct: 155 DDDGKVFATPAHPVIEDLDSLTPDWSLYDWDKYIYTPLNCRLAVPNFARGCPFTCTFCSQ 214

Query: 196 PYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL 254
                   +RS    VDE   L+    V    L  +     + K +        +L+   
Sbjct: 215 WQFWRRYRARSPKHFVDEIEVLVKKYNVGFFILADEEPTINKQKFV----SLCQELIDRK 270

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
             +   +  R T          L+       ++  ++ L  ++ S   L    +  T  E
Sbjct: 271 LNVTWGINTRVTDIMR---DADLLPFFRKAGLV--HVSLGTEAASQMNLNRFRKETTIEE 325

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
            +  I  ++     I   + F++G   ET +    T  L        A    Y+P  
Sbjct: 326 NKLAIKLLQKN--GIVAEAQFVMGLEHETPETIEETYQLCKDWDPDMANWTIYTPWP 380


>gi|148265614|ref|YP_001232320.1| radical SAM domain-containing protein [Geobacter uraniireducens
           Rf4]
 gi|146399114|gb|ABQ27747.1| Radical SAM domain protein [Geobacter uraniireducens Rf4]
          Length = 472

 Score = 80.4 bits (197), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 64/380 (16%), Positives = 118/380 (31%), Gaps = 71/380 (18%)

Query: 44  MEDMFFSQGYER------VNSMDDADLI---------VLN-TCHIREKAAEKVYSFLGRI 87
           +     ++G E        + +  A+L+         V+  +C     +  + Y    R+
Sbjct: 35  IAAYLEARGMEVELIDCYAHPVSTAELVAGIIAKAPDVVGFSC--TTSSFLEGYQIALRL 92

Query: 88  RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG- 146
           + L          + VV  G  A + G  +L   P ++ +V  +      ELL     G 
Sbjct: 93  KEL-------APQIRVVFGGAHACSVGVSLLDDFPAIDYLVIGEGEVTFFELLASGFSGV 145

Query: 147 --------------------KRVVDTDYSVEDKFERLSIVDGGYNRK-----RGVTAFLT 181
                               + + D D      + RL+   G YN             + 
Sbjct: 146 EAIPGIGFRLDGKGAFSGNREHIADLDTLPFPAYRRLADFPGRYNLPLFSYPHAPNTSII 205

Query: 182 IQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARK-LIDNGVCEITLLGQNVNAWRGKGL 240
              GC   C++C            S + + +  +    D G+  +          R +  
Sbjct: 206 SSRGCPYNCSYCDRSVFSRGFRFNSPAYIFEHLKYLHRDFGIRHVFFYDDLFTFDRNR-- 263

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV-LMPYLHLPVQSGS 299
                     +  L  +    RL  T +    +     +  G L       ++  V+SG 
Sbjct: 264 ----------VEELCRLLVDSRLPVTYNCIARLEHVDCELVGLLKKSGCWQVNFGVESGD 313

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSD--FIVGFPGETDDDFRATMDLVDKI 357
             ILK    +H  Y     + +   +  D  +     F+VG PGE +   R T+D    +
Sbjct: 314 PEILK----KHRKYMALDAVQQKLRMVGDAGMRVKGLFMVGLPGEDETAIRRTIDYALTL 369

Query: 358 GYAQAFSFKYSPRLGTPGSN 377
              +    K++P  G P   
Sbjct: 370 PLDEINVTKFTPFPGAPIYR 389


>gi|297155135|gb|ADI04847.1| Radical SAM domain protein [Streptomyces bingchenggensis BCW-1]
          Length = 546

 Score = 80.0 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 62/312 (19%), Positives = 107/312 (34%), Gaps = 36/312 (11%)

Query: 56  VNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGE 115
           V    D D+++L+T  I ++           +        +      +V+ G  +  + +
Sbjct: 122 VEPPTDMDVVLLSTTFIWDR---------RTLAKAVAWVEERFPTADLVLGGQYSNLKFQ 172

Query: 116 EILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFE-------RLSIVDG 168
            IL   P V  +V       LP LL   R    V D    V    +       R+  +D 
Sbjct: 173 RILAEHPFVRYIVRGDAEAALPALLRALRTKGDVADVPNLVWRDPDTDRMRMTRIEYIDL 232

Query: 169 GYNRKRGVTAFLTI-----QEGCDKFCTFCVVPYTRGIEISRSLSQVVD-EARKLIDNGV 222
                 G    L +       GC   C +C  P        +S  ++ D   R   +NG 
Sbjct: 233 DALPSPGPVGTLPVVPYESMRGCPFSCKYCSFPAASPKWRYKSAQKIADDFLRYRRENGA 292

Query: 223 CEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHG 282
             I  L           +   +      L + +++      R  +   R + D L +AH 
Sbjct: 293 EYIKALDSTFT------VPPTRLRALLPLLAEADVGWEAYTRANSIRDRSVVDDLERAH- 345

Query: 283 DLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGE 342
                   L +  +S +D  L  M+++  A   R   + +++    I     FIVG+PGE
Sbjct: 346 -----CRALSIGFESMNDTTLGHMHKQVKARANRVAFELLQNS--SIHSFVSFIVGYPGE 398

Query: 343 TDDDFRATMDLV 354
           T + F  T   +
Sbjct: 399 TPELFEDTRRFL 410


>gi|284162819|ref|YP_003401442.1| radical SAM protein [Archaeoglobus profundus DSM 5631]
 gi|284012816|gb|ADB58769.1| Radical SAM domain protein [Archaeoglobus profundus DSM 5631]
          Length = 491

 Score = 80.0 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 46/290 (15%), Positives = 111/290 (38%), Gaps = 29/290 (10%)

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVA-QAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
              NL          + ++V G  + Q E +E  +    V+ VV  +     P+L ++A 
Sbjct: 122 EFVNLMEKLKPFKDRIKIIVGGPGSWQLEWDEYWKNF--VDCVVIGEADEIAPDLFKKAL 179

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G  +    +    + E++  +     ++  +   + I  GC + C FC    T      
Sbjct: 180 KGDELPKIVHCKSPEVEKIPTI-----KRPSINGLIEISRGCGRGCRFC--SETLKRRRD 232

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD--GEKCTFSDLLYSLSEIKGLVR 262
             L ++++E    I  G   + L  ++V  +  K       +     L   + ++   + 
Sbjct: 233 IPLPKIIEEVELNIRGGTKGVILHAEDVLLYGCKDPKFVPNEEKVLRLFKEVKKVTDNIG 292

Query: 263 L-------RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR-----H 310
           +         +     +    +++    + +    +   V++GS R+++          H
Sbjct: 293 ISHCSLAAVCSKPKIVEEISHILEVGDRIPMF--GVQTGVETGSTRLMEKYMHGKCLPFH 350

Query: 311 TAYEYRQIIDRIRSVRPD--IAISSDFIVGFPGETDDDFRATMDLVDKIG 358
            +     ++++  ++  D     ++  ++G P ETDDD   T++LV+++ 
Sbjct: 351 PSEW-CDVVEQAFAIMHDNLWVPAATLLIGLPDETDDDIIKTIELVERLR 399


>gi|254167626|ref|ZP_04874477.1| radical SAM domain protein [Aciduliprofundum boonei T469]
 gi|197623435|gb|EDY35999.1| radical SAM domain protein [Aciduliprofundum boonei T469]
          Length = 526

 Score = 80.0 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 59/357 (16%), Positives = 121/357 (33%), Gaps = 36/357 (10%)

Query: 138 ELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKF----CTFC 193
           ++L       R+ + +           IV    +    +   +    GC ++    C+FC
Sbjct: 123 DILTENFTHHRLHNLNKWNRWLKLGTYIVKEHPDYPEPLIVEIETFRGCSRYLSGGCSFC 182

Query: 194 VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG-------EKCT 246
           V P   G  + R +  +V+E R L + GV    + GQ           G           
Sbjct: 183 VEP-LYGKPMFREIDDIVEEVRILSNLGVRNFRIGGQTCIYSYKAYGVGKQEIPQPNIHA 241

Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLH------LPVQSGSD 300
             DL   L++I   V L    ++P  ++    +A    ++L+ Y          ++S   
Sbjct: 242 LEDLFSKLNKIPHRV-LHVDNANPAVLASYPEEARKITEILVKYTTPGNVVAFGMESADP 300

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSV--------RPDIAISSDFIVGFPGETDDDFRATMD 352
            ++K+ N   T       I  I  +         P +    +FI G  GE+ D +   + 
Sbjct: 301 AVIKANNLNSTPEMVMNAIRIINEIGAVRGENGMPKLLPGLNFICGLWGESKDTYAMNLK 360

Query: 353 LVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACV-- 410
            + ++        + + R     +++  +     + E     ++   + +       V  
Sbjct: 361 FLKEVLAKGYLLRRINIRQ---VASVRNKFKLKYRHECWKFRREVREKIEKIMLKRIVPM 417

Query: 411 GQII-EVLIEKHGKEKGKLVGRSPW-LQSVVLNSKNHNIGDIIKVRITDVKISTLYG 465
           G ++ +V +E          GR P     VV+      +G  + V++      +L  
Sbjct: 418 GTVLKDVYLE--IHRGNYTFGRQPGSYPLVVVLPYFSEVGKYVNVKVVGYGERSLTA 472


>gi|170290166|ref|YP_001736982.1| radical SAM domain-containing protein [Candidatus Korarchaeum
           cryptofilum OPF8]
 gi|170174246|gb|ACB07299.1| Radical SAM domain protein [Candidatus Korarchaeum cryptofilum
           OPF8]
          Length = 489

 Score = 80.0 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 48/286 (16%), Positives = 111/286 (38%), Gaps = 17/286 (5%)

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAE--GEEILRRSPIVNVVVGPQTYYRLPELLER 142
            R    K           +VV G  A       E++ R  I  +V G +    + +++ +
Sbjct: 123 RRFMESKEMEYFRRKGAKIVVGGPAAWQWLYKPELIERWGITTIVDG-EGEKVIVDVVRK 181

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
              G+          D+   L   +    +K  V   + +  GC + C FC V       
Sbjct: 182 ILDGEEPPKLIQVGVDEVPSLD--EIPLIKKPSVNGLVEVSRGCPRGCRFCSVTL--RPL 237

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKGLV 261
              +L  + +E    +  GV  + L   +V  +  +G+  ++ +   L   + S+   + 
Sbjct: 238 RHYTLDMISEEIDVNLRGGVRGVILHSDDVLLYGSRGVYPDERSLLKLHELVKSKKVNIA 297

Query: 262 RLRYTTSHPR--DMSDCLIKAHGDL-DVLMPYLHLPVQSGSDRILKSMN----RRHTAYE 314
              ++ S  +  + +  L+    ++       + + +++GS R+ + +       ++  +
Sbjct: 298 WSHFSLSAVKYAEENFKLVSRISEMFGDYYKGVEVGIETGSVRLAEKIMPAKALPYSVKD 357

Query: 315 YRQIIDRIRSVRPD--IAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           +R ++    S+  D  I  ++  I G P E  +D  A+++LV+ + 
Sbjct: 358 WRNVVIDAFSIMHDAKIVPAATLITGIPEERPEDTIASIELVEDLR 403


>gi|223935837|ref|ZP_03627752.1| Radical SAM domain protein [bacterium Ellin514]
 gi|223895438|gb|EEF61884.1| Radical SAM domain protein [bacterium Ellin514]
          Length = 467

 Score = 80.0 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 50/303 (16%), Positives = 105/303 (34%), Gaps = 38/303 (12%)

Query: 88  RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147
           R  + +       ++VV+ G       E+     P  + +V        P+LL     G 
Sbjct: 82  RAYELADHFRQRSIIVVMGGPHVTLIPED---AQPHADAIVIGYAEDTWPQLLRDFAAGC 138

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTA-------FLTIQEGCDKFCTFCVVPYTRG 200
                     D+  +L++ D  + R+  + +             GC   C FCVVP   G
Sbjct: 139 LA-----PRYDQAPQLNLADRPFPRRDLLPSQRYLTNNVFEATRGCVHSCDFCVVPSAWG 193

Query: 201 IE-ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
            +   + ++ ++ + R+    G  ++  +  N+ A RG  L        +L  +L  +  
Sbjct: 194 RKPYQKPVADIIADIRQH---GARKLIFVDLNLIADRGYAL--------ELFAALIPL-- 240

Query: 260 LVRLRYTTSHPRDM--SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA-YEYR 316
             RL++       +     L++           L + ++S S   L+   +   +  ++ 
Sbjct: 241 --RLQWYGLATVLLAEDPELLELAARSG--CKGLLMGLESISTANLRQSRKGFNSPDKFF 296

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
            +++ +      IA+   F+ G   +  D F  T +   +           +P   T   
Sbjct: 297 NLVESLHQ--HGIALQGCFVFGLDHDEPDVFLKTAEFAVQARIDLPRFAIVTPFPNTSLY 354

Query: 377 NML 379
             L
Sbjct: 355 KRL 357


>gi|194337570|ref|YP_002019364.1| magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative
           cyclase [Pelodictyon phaeoclathratiforme BU-1]
 gi|194310047|gb|ACF44747.1| magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative
           cyclase [Pelodictyon phaeoclathratiforme BU-1]
          Length = 546

 Score = 80.0 bits (196), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 48/315 (15%), Positives = 93/315 (29%), Gaps = 38/315 (12%)

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           + + + +     K    +  ++ G  +     ++L  +P  + VV  +       L+   
Sbjct: 77  IFKAQEIMKIAKKVDPKIRTIMGGIHSTFMYPQVLSEAPETDYVVRGEGEEVTVNLIREI 136

Query: 144 -------------------RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT------- 177
                                G       + V +  + LS     Y   + +        
Sbjct: 137 AAGTDRQNRGDITGIAYLDDEGNVFATPAHPVIEDLDTLSPDWSLYEWDKYIYTPLNCRL 196

Query: 178 AFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNG-VCEITLLGQNVNAWR 236
           A      GC   CTFC          +RS    VDE   L+    V    L  +     +
Sbjct: 197 AVPNFARGCPFTCTFCSQWQFWRRYRARSPKLFVDEIEVLVKQHKVGFFILADEEPTINK 256

Query: 237 GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQ 296
            K +        +L+    ++   +  R T          L+       ++  ++ L  +
Sbjct: 257 QKFV----SLCQELIDRKLDVTWGINTRVTDIMR---DADLLPFFRKAGLV--HVSLGTE 307

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
           + S   L    +  T  E +  I  ++     I   + F++G   ET +    T  L   
Sbjct: 308 AASQMNLNRFRKETTIEENKLAIKLLQKN--GIVAEAQFVMGLEHETPETIEETYQLCKD 365

Query: 357 IGYAQAFSFKYSPRL 371
                A    Y+P  
Sbjct: 366 WDPDMANWTIYTPWP 380


>gi|253700272|ref|YP_003021461.1| radical SAM protein [Geobacter sp. M21]
 gi|251775122|gb|ACT17703.1| Radical SAM domain protein [Geobacter sp. M21]
          Length = 450

 Score = 80.0 bits (196), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 56/289 (19%), Positives = 100/289 (34%), Gaps = 27/289 (9%)

Query: 102 LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFE 161
           +++V G       E I      V+ +V  +    L E+L+    G+ V    +   D   
Sbjct: 98  IILVGGPHTSVGAESI---PDFVDHIVIGEGEISLFEILDGQEKGRIVQGKPWQDLDTLP 154

Query: 162 RLSIVDGGYNRKRGVTAFL--------TIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVD 212
            L               ++            GC   CTFC V    G     +S  +V+ 
Sbjct: 155 FLPWDLFASLPYHKSIPWVEADNVFTMNTSRGCPFSCTFCSVKSVWGKSYRYQSAGRVLA 214

Query: 213 EARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
           E R LI+       + G     +R       K    +    +    GL  +    +    
Sbjct: 215 EIRHLIE-------VYGVEGIYFREDHFTLNKARLLEFCRGVVS-SGLQFVWACETRVDA 266

Query: 273 MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAIS 332
           + +  I            ++L V+SGS R+L  + +     E  +++  ++     I   
Sbjct: 267 LDEESITLMASSG--CKAVYLGVESGSQRMLDRLGKGIQLVEVERVLMLLKK--HGIVSY 322

Query: 333 SDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
             F+ G PGET  D   T  L+ +    Q  +  ++  +G PGS +  +
Sbjct: 323 CSFVAGIPGETFLDLLRTKALIRR---TQPGAHAFAVYVGIPGSELYRE 368


>gi|158522484|ref|YP_001530354.1| radical SAM domain-containing protein [Desulfococcus oleovorans
           Hxd3]
 gi|158511310|gb|ABW68277.1| Radical SAM domain protein [Desulfococcus oleovorans Hxd3]
          Length = 468

 Score = 80.0 bits (196), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 66/324 (20%), Positives = 103/324 (31%), Gaps = 43/324 (13%)

Query: 97  EGGDLLVVVAGCVAQAEGEEILRRSPIVNV-VVGPQTY---------------------- 133
                L+VV G  A     +IL R   V+V V+G                          
Sbjct: 93  HAPGALIVVGGPYATYHYADILDRHREVDVAVIGEGERVFLNLVRTVIEEGDVQSVKGIA 152

Query: 134 YRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKR-----GVTAFLTI--QEGC 186
            R  + +        + D D      +E + I     N           A+  I     C
Sbjct: 153 CRGADAVACNEREPYIEDLDAVPFPDYEAIDIRRYWGNHPEMNGVLAKKAYTHIISSRAC 212

Query: 187 DKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKC 245
              C +C           RS    V E   L    GV E  ++    N  R +  D  + 
Sbjct: 213 PYHCVYCHN-IFGKKVRKRSPENFVVEIELLYHQYGVREFQIIDDIFNIDRPRMHDILRR 271

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
             S  +         +R    T    D    L++A G        + L +++ S R+ K 
Sbjct: 272 IMSSGMKIKIAFPNGLRGDLLTHEDID----LLQAAGAY-----MITLAIETASVRMQKI 322

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           + +          I    S    + +   F++GFPGET ++ + T+DL  K     A  F
Sbjct: 323 IRKHLDIPRVMDNIAYAASR--GLIVKGYFMIGFPGETVEEMKQTIDLAVKSKLDLAHFF 380

Query: 366 KYSPRLGTPGSNMLEQVDENVKAE 389
              P  GT  + M   +  +V  E
Sbjct: 381 TVIPFEGTELAEMARALYPDVGRE 404


>gi|328880563|emb|CCA53802.1| radical SAM domain protein [Streptomyces venezuelae ATCC 10712]
          Length = 525

 Score = 80.0 bits (196), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 56/286 (19%), Positives = 101/286 (35%), Gaps = 30/286 (10%)

Query: 72  IREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ 131
           +RE          G+  NLK          +V V     +      L      + + G  
Sbjct: 130 VRENLPGTRIVAGGQFTNLKFMAAMRDHPEIVAVVRGDGEIALPRTL------DALAGRG 183

Query: 132 TYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCT 191
               +P L+ R     R+  T+Y   ++F    ++       + +  + +   GC   C 
Sbjct: 184 ELSAVPNLVWRDEENIRINPTEYVDIEEFPSPLVLGD-----QPIVPYES-MRGCPFDCK 237

Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLL 251
           FC  P        +S  ++ D+     D         G +V +               LL
Sbjct: 238 FCSFPAASPKWRYKSAEKIRDDWISYADRN-------GADVISAMDSTFTIPPTRLRRLL 290

Query: 252 YSL--SEIKGLVRL-RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
             L  S +       R  T +  ++   L  AH         LH+  +S +D  LK M++
Sbjct: 291 EILPDSGVPRWEGFSRANTINSAELVAGLKAAH------CFQLHIGFESMNDDTLKRMSK 344

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           R +  + R+ ++ +     +++    FIVG+PGE    F+ T D +
Sbjct: 345 RVSVKQNRRAVELLSES--ELSYYGLFIVGYPGEDPGMFQDTQDYL 388


>gi|146279850|ref|YP_001170008.1| hypothetical protein Rsph17025_3848 [Rhodobacter sphaeroides ATCC
           17025]
 gi|145558091|gb|ABP72703.1| hypothetical protein Rsph17025_3848 [Rhodobacter sphaeroides ATCC
           17025]
          Length = 532

 Score = 80.0 bits (196), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 48/275 (17%), Positives = 91/275 (33%), Gaps = 22/275 (8%)

Query: 115 EEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVD--TDYSVEDKFERLSIVDGGYNR 172
           +E           +G +     P  LE    G+  +      +  D  +           
Sbjct: 123 DEAAFEGKCDVAFIG-EAEMTWPAYLEDLAAGRPTLTRYAQSARSDMTKIPKPRLDLIKS 181

Query: 173 KRGVTAFLTIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVCEITLLGQN 231
           +R   A +    GC   C FC +    G     +++ QV+ E + + D G  +  L+  N
Sbjct: 182 ERYRVASIQFSRGCPYLCEFCDIIVMFGRVPRLKTVEQVIAELQDVHDAGFRQCFLVDDN 241

Query: 232 VNAWRGKGLDGEKCTFSDLLYSLSEIKG-LVRLRYTTSHPRD---MSDCLIKAHGDLDVL 287
                     G K     LL +++  +  L R    ++           L+      +  
Sbjct: 242 FI--------GNKREAKRLLQAIAAWQKTLPRPLNLSTEASVNLADEPDLLDLMRQAN-- 291

Query: 288 MPYLHLPVQSGSDRILKSMNRRH--TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDD 345
              + + +++ +   LK   +            + RIR+    + ++  FIVGF  +T +
Sbjct: 292 FDRVFVGIETPNLASLKETRKTQNLRGDSLVAKVQRIRNA--GLIVTGGFIVGFDEDTPE 349

Query: 346 DFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
            F A    +   G   +     +P   TP    LE
Sbjct: 350 IFEAQYKFIHDSGIVMSSIGILAPLPTTPLYERLE 384


>gi|94968118|ref|YP_590166.1| radical SAM family Fe-S protein [Candidatus Koribacter versatilis
           Ellin345]
 gi|94550168|gb|ABF40092.1| Fe-S protein, radical SAM family [Candidatus Koribacter versatilis
           Ellin345]
          Length = 591

 Score = 80.0 bits (196), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 56/307 (18%), Positives = 101/307 (32%), Gaps = 23/307 (7%)

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             +R  +   +       V+  G  A    EE   R    +VV G          L    
Sbjct: 136 NALRGYEVGNLARERGAWVIYGGIHATLYPEEAFDRGGAHSVVTG-DGDLIWASALADCA 194

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG-IEI 203
            G           +  + ++      +  + + A +    GC K C+FC V  T G    
Sbjct: 195 AGTPGHIYAGGKIEGDQFIAARWDLVDTDKYMWASVQTIRGCPKHCSFCSVWRTDGQKPR 254

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNV---------------NAWRGKGLDGEKCTFS 248
            R+   V++E   L   G   I L   N                N  + + L+  +    
Sbjct: 255 QRNFQSVIEEIVDLRRRGFRFIALADDNFYPVTLTDLRLAKAQNNTEKLRNLEQIREERF 314

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
            L+  L+ +   +      +         + A    ++      + V++ +   LK++ +
Sbjct: 315 HLMAQLARLPKDMVFFTQITMEAAEDAAFLDAMRAANI--KGALVGVEAVTPEGLKAVYK 372

Query: 309 --RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
              ++     Q +   R  R  + +   FI G P +  + F AT+DL  K G   A    
Sbjct: 373 DFNYSGDRLAQQLQEFR--RHGVHVLGSFIFGLPTDKPETFDATVDLALKSGITFAQFVM 430

Query: 367 YSPRLGT 373
            +P  GT
Sbjct: 431 MTPFPGT 437


>gi|70607514|ref|YP_256384.1| hypothetical protein Saci_1785 [Sulfolobus acidocaldarius DSM 639]
 gi|68568162|gb|AAY81091.1| conserved Prokaryal protein [Sulfolobus acidocaldarius DSM 639]
          Length = 533

 Score = 80.0 bits (196), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 46/248 (18%), Positives = 89/248 (35%), Gaps = 23/248 (9%)

Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKR----------GVTAFLTIQEGCDKF 189
           +   + GK V +    + D  ++L +      RK              A +    GC   
Sbjct: 151 IMHKKDGKTVRNPPAPLIDDLDKLPLPAFDLVRKELYRIDIFNEDQYVACMETARGCPYA 210

Query: 190 CTFC-VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS 248
           C FC V P       ++S S+++ E  ++   G   I  +      W        +  F 
Sbjct: 211 CDFCSVTPTWGNKWRNKSNSRILKEIEEIKKLGYNWIFFVDDIFIVW--PNRSQREKLFR 268

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
           +++     I  + ++R   +     +  LIK     D  +    L ++SGS   LK M++
Sbjct: 269 EMIDRKLTINFITQIR---ADVTARNPQLIKL--ASDAGLRVAFLGIESGSQETLKKMHK 323

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL---VDKIGYAQAFSF 365
                +  + +  +      + +    ++G P E+  D  AT+     +  +G       
Sbjct: 324 GLAIPDSVKAVKVLHEN--GVIVFLGMMLGAPYESLKDMIATIKFSRKLADVGADGVQFS 381

Query: 366 KYSPRLGT 373
            Y+P  GT
Sbjct: 382 IYTPLPGT 389


>gi|289596960|ref|YP_003483656.1| Radical SAM domain protein [Aciduliprofundum boonei T469]
 gi|289534747|gb|ADD09094.1| Radical SAM domain protein [Aciduliprofundum boonei T469]
          Length = 532

 Score = 80.0 bits (196), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 59/357 (16%), Positives = 121/357 (33%), Gaps = 36/357 (10%)

Query: 138 ELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKF----CTFC 193
           ++L       R+ + +           IV    +    +   +    GC ++    C+FC
Sbjct: 129 DILTENFTHHRLHNLNKWNRWLKLGTYIVKEHPDYPEPLIVEIETFRGCSRYLSGGCSFC 188

Query: 194 VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG-------EKCT 246
           V P   G  + R +  +V+E R L + GV    + GQ           G           
Sbjct: 189 VEP-LYGKPMFREIDDIVEEVRILSNLGVRNFRIGGQTCIYSYKAYGVGKQEIPQPNIHA 247

Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLH------LPVQSGSD 300
             DL   L++I   V L    ++P  ++    +A    ++L+ Y          ++S   
Sbjct: 248 LEDLFSKLNKIPHRV-LHVDNANPAVLASYPEEARKITEILVKYTTPGNVVAFGMESADP 306

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSV--------RPDIAISSDFIVGFPGETDDDFRATMD 352
            ++K+ N   T       I  I  +         P +    +FI G  GE+ D +   + 
Sbjct: 307 AVIKANNLNSTPEMVMNAIRIINEIGAVRGENGMPKLLPGLNFICGLWGESKDTYAMNLK 366

Query: 353 LVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACV-- 410
            + ++        + + R     +++  +     + E     ++   + +       V  
Sbjct: 367 FLKEVLAKGYLLRRINIRQ---VASVRNKFKLKYRHECWKFRREVREKIEKIMLKRIVPM 423

Query: 411 GQII-EVLIEKHGKEKGKLVGRSPW-LQSVVLNSKNHNIGDIIKVRITDVKISTLYG 465
           G ++ +V +E          GR P     VV+      +G  + V++      +L  
Sbjct: 424 GTVLKDVYLE--IHRGNYTFGRQPGSYPLVVVLPYFSEVGKYVNVKVVGYGERSLTA 478


>gi|70606080|ref|YP_254950.1| hypothetical protein Saci_0240 [Sulfolobus acidocaldarius DSM 639]
 gi|68566728|gb|AAY79657.1| conserved Archaeal protein [Sulfolobus acidocaldarius DSM 639]
          Length = 528

 Score = 79.6 bits (195), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 49/302 (16%), Positives = 105/302 (34%), Gaps = 37/302 (12%)

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            I++LK         + V+  G  A    E  L++   ++ V   +    LP L++    
Sbjct: 131 EIKSLKEKYK-----IKVIAGGPGA---WELSLKKPDWIDTVFVGEAEVDLPPLVKSILD 182

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC-VVPYTRGIEIS 204
           G            K +++  +             + +  GC + C FC + P T     S
Sbjct: 183 GNEPPSIVRGRNPKLDKIPPIQNPARLGE-----VQVTRGCPRGCRFCSITPET---FRS 234

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE--IKGLVR 262
             +  +  E    +  G   +  +  ++  +  + L        +L   + +  + G+  
Sbjct: 235 IPIDVIKKEVEINMKGGWRRVEFITDDILLYGSQKLRTNHDAIVNLFSEVMKMGVDGIWF 294

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLH-------LPVQSGSDRILKSMNR----RHT 311
              +    R+ S   +KA  +   +  Y         + ++SGS +I++          T
Sbjct: 295 PHISAPAVRE-SPKTVKAMSE---IASYNFDRAAAPVVGLESGSLKIIEKYMPAKAFPWT 350

Query: 312 AYEYRQIIDRIRSVRPD--IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369
             ++R +I    ++  D  I       +G+P ET++D   ++ LV  +           P
Sbjct: 351 PRDWRDVILDATAIMNDNYIYPCYTMTIGYPEETEEDVDQSISLVQSL-IDHKLVTWIFP 409

Query: 370 RL 371
             
Sbjct: 410 LP 411


>gi|71909808|ref|YP_287395.1| cobalamin B12-binding:radical SAM family protein [Dechloromonas
           aromatica RCB]
 gi|71849429|gb|AAZ48925.1| Cobalamin B12-binding:Radical SAM [Dechloromonas aromatica RCB]
          Length = 548

 Score = 79.6 bits (195), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 60/306 (19%), Positives = 105/306 (34%), Gaps = 39/306 (12%)

Query: 95  IKEGGDLLVVVAGCVAQAEGEEILRRSPIVN-VVVGPQTY-----------YRLPELLER 142
            +   ++ +V       + G  IL   P ++ +V+G                 +  L+ R
Sbjct: 95  RERRPEIRIVFGNVHVSSLGAPILEHFPEIDYLVIGEGEGSFLDLADGKPLNEIGNLVWR 154

Query: 143 ARFGK--------RVVDTDYSVEDKFERLSIVDGGYNRK-----RGVTAFLTIQEGCDKF 189
              G+        R++D D      +E+L+     Y+       +   A +    GC   
Sbjct: 155 NENGRIVVNPRRDRILDLDELPFPAYEKLAGFPHAYHLPLFAYEKRFGATMITSRGCPYT 214

Query: 190 CTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFS 248
           C+FC       +  + S     D  + L DN GV  I +      A        +K    
Sbjct: 215 CSFCDRTVFERLYKTNSAQYTYDHMKYLRDNFGVYHINMYDDLFTA--------KKQRVF 266

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
           DL   L E K L             SD ++        LM  + + ++S    +++    
Sbjct: 267 DLCELLIE-KPLGIQWNCAIRTGHTSDEMLAKLKQAGALM--VSMGIESADPGMMERHKA 323

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
             T    R  + +I +    +     FI G PGET +  + T D +  +   +    K+S
Sbjct: 324 GVTLDAVRDTVRQIHAA--GLRAKGLFIFGMPGETPETVKVTSDFILSLDLDEMNMTKFS 381

Query: 369 PRLGTP 374
           P  G P
Sbjct: 382 PLHGAP 387


>gi|31621273|gb|AAP59031.1| BchE [Thiocapsa roseopersicina]
          Length = 551

 Score = 79.6 bits (195), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 41/248 (16%), Positives = 83/248 (33%), Gaps = 15/248 (6%)

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           A   + V++   ++   +  L      Y       A      GC   C FC         
Sbjct: 162 ATPARPVIEDLDTLTPDWSLLDWDKYIYTPLNCRVAVPNFARGCPFTCRFCSQWKFWRKY 221

Query: 203 ISRSLSQVVDEARKLI-DNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
             R   + VDE   L+ D  V  + L  +    ++ K +        +L+     +   +
Sbjct: 222 RHRDPKKFVDEIETLVRDYNVGFMILADEEPTIFQKKFV----ALCEELIKRDLPLHWGI 277

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
             R T          L+  +    ++  ++ L  ++ S   L +  ++ T  + +  +  
Sbjct: 278 NTRVTDIMR---DRNLLPLYRKAGLV--HVSLGTEAVSQLNLDTFRKQTTVEQNKLAVKL 332

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           ++     I     FI+G   ET +    T  L        A    Y+P    P + + E+
Sbjct: 333 LQQA--GIVAEVQFIMGLENETPETIEETYKLAQDWKPDMANWNMYTPW---PFAELFEE 387

Query: 382 VDENVKAE 389
           + + V+  
Sbjct: 388 LGDRVEVR 395


>gi|15644285|ref|NP_229337.1| Mg-protoporphyrin IX monomethyl ester oxidative cyclase-related
           protein [Thermotoga maritima MSB8]
 gi|4982104|gb|AAD36604.1|AE001800_14 Mg-protoporphyrin IX monomethyl ester oxidative cyclase-related
           protein [Thermotoga maritima MSB8]
          Length = 441

 Score = 79.6 bits (195), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 56/370 (15%), Positives = 117/370 (31%), Gaps = 50/370 (13%)

Query: 43  RMEDMFFSQGYERV---NSMDDADLIVLNTCHIRE------KAAEKVYSFLGRIRNLKNS 93
            +      +G+       +++  DL   N    R+       A    +  + RI     +
Sbjct: 28  YISSSLKRKGHSVALIDMNVEKFDLERFN---FRDYDVVGISADTVRFPVVERIAKKAKA 84

Query: 94  RIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR----- 148
           +     ++ VV+ G  A A   EIL++     VV+G        +L+E     ++     
Sbjct: 85  Q-----NVTVVMGGPHATAYYHEILQKGLCDYVVLGEGER-AFSDLVESIASNEKYPLIP 138

Query: 149 ---------VVDTDYSVEDKFERLSIVDGGYNRKRGVT------AFLTIQEGCDKFCTFC 193
                    V+       +  + L   D                  L    GC   C FC
Sbjct: 139 GVAYMKDGEVIALPSRFLENLDDLPFPDREKVHLYRTKFAGERATSLITSRGCPFNCEFC 198

Query: 194 VVPYTRGIEIS-RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLY 252
                 G  I  RS+  V+DE + L   G   +     N            K   +    
Sbjct: 199 SASQFMGRRIRWRSIENVIDELKILKKLGYGSVIFFDDNFTIN-------PKRVVNLCEE 251

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
            + +        ++ +      + +++A          L +  +S +D +L+   +   +
Sbjct: 252 MMRKDLRFKWWAFSRADELLGREDMVEAM--SKAGCRMLFIGFESANDEVLEEYGKNLKS 309

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
                ++  ++  + D+   + F++G   +T      T+    K+  +       +P  G
Sbjct: 310 DIAFDVMKLLKKYKVDV--FASFVIGALKDTRKTIEKTVKFAKKLKASIVQFSILTPYPG 367

Query: 373 TPGSNMLEQV 382
           T     L+ +
Sbjct: 368 TALFEKLKHL 377


>gi|238762862|ref|ZP_04623830.1| hypothetical protein ykris0001_31720 [Yersinia kristensenii ATCC
          33638]
 gi|238698873|gb|EEP91622.1| hypothetical protein ykris0001_31720 [Yersinia kristensenii ATCC
          33638]
          Length = 86

 Score = 79.6 bits (195), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 30/59 (50%), Positives = 39/59 (66%), Gaps = 1/59 (1%)

Query: 36 MNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNS 93
          MN YDS +M D+  S  GY+     ++ADL++LNTC IREKA EKV+S LG  + LK  
Sbjct: 1  MNEYDSSKMADLLASTHGYQLTEIPEEADLLLLNTCSIREKAQEKVFSLLGHWKLLKRK 59


>gi|158521753|ref|YP_001529623.1| radical SAM domain-containing protein [Desulfococcus oleovorans
           Hxd3]
 gi|158510579|gb|ABW67546.1| Radical SAM domain protein [Desulfococcus oleovorans Hxd3]
          Length = 521

 Score = 79.6 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 79/222 (35%), Gaps = 13/222 (5%)

Query: 153 DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG-IEISRSLSQVV 211
           D    + + +       + RKR  T  ++   GC   C FC      G    +RS   V+
Sbjct: 205 DLLPMEAYFKAGKPMAYHWRKRRNTPIVS-SRGCPFGCPFCSSYLHWGKRFRTRSAENVL 263

Query: 212 DEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270
            E   L     + E+     N+ A R       K   +     +     +          
Sbjct: 264 AEIAHLKSRYDIQELKWQDDNLTADR-------KRAMAIFRGMVDRGLTMPWNTPNGIAL 316

Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330
             + D L+            + L V+SG      +  ++  + +  + + R+ + +  I+
Sbjct: 317 WTIDDELMGLMKQSG--CYQITLAVESGDPDTFAAYVKKPFSLDRAREVARL-AKKHGIS 373

Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
             + FI+GFPGET +  + +M     +G      F ++P  G
Sbjct: 374 TVAYFIIGFPGETLEQVQRSMRFGLDLGVDYLVPFVFNPLPG 415


>gi|116625676|ref|YP_827832.1| radical SAM domain-containing protein [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116228838|gb|ABJ87547.1| Radical SAM domain protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 439

 Score = 79.6 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 54/264 (20%), Positives = 90/264 (34%), Gaps = 25/264 (9%)

Query: 126 VVVGPQTYYRLPELLERARFGKRV--------VDTDYSVEDKFERLSI---VDGGYNRKR 174
            ++G     ++P L+ RA  G  V         D D       ER+ I   +     R  
Sbjct: 127 AILGGTAREQVPGLIFRAGDGSTVNTGPARLLPDLDAQPWPDRERVDIGQYLRVWRERHG 186

Query: 175 GVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA 234
             +  +    GC   C +C           RS   VV+E + +++    E      +V  
Sbjct: 187 AGSVSVITARGCPYHCRWCSHSTYGKTHRRRSAMDVVNEVQWILERYAPEQVWFADDVFT 246

Query: 235 WRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKA-HGDLDVLMPYLHL 293
                LD  +         L       R+ +      D  +  + A   +L      + +
Sbjct: 247 IHHGWLD--QYAAEMKRRGL-------RVPFECITRADRVNARVAAQLAELG--CDRVWI 295

Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
             +SGS R+L +M R  T  + R  + +++     I     F+ G+ GE   D  AT + 
Sbjct: 296 GSESGSQRLLDAMERGVTVAQVRDAVGQLKQN--GIRTGMFFMWGYEGEELSDIEATYEH 353

Query: 354 VDKIGYAQAFSFKYSPRLGTPGSN 377
           V        F+    P  GTP   
Sbjct: 354 VKACQPDVFFTTISYPIKGTPYYE 377


>gi|78187522|ref|YP_375565.1| Elongator protein 3/MiaB/NifB [Chlorobium luteolum DSM 273]
 gi|78167424|gb|ABB24522.1| Elongator protein 3/MiaB/NifB [Chlorobium luteolum DSM 273]
          Length = 612

 Score = 79.6 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 71/388 (18%), Positives = 124/388 (31%), Gaps = 67/388 (17%)

Query: 10  VAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNT 69
           +A  V   V+  ++P+ ++ +             +  +               DL+ +++
Sbjct: 33  LAAAVKDAVESIVMPEHYYDERL--------FESLRGLLRK---------SPCDLVAISS 75

Query: 70  CHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG 129
                      +S   R+  +            VVV G    A   E+L R P ++ VV 
Sbjct: 76  MT-------GAWSQALRLARIAREA-----GAFVVVGGFHPTALATEVL-REPDIDAVVK 122

Query: 130 PQTYYRLPELLER-----------------ARFGKRVVDTDYSVEDKFERLSIVDGGYNR 172
            +      EL+                        R V  D      F   S+  G Y  
Sbjct: 123 GEGEETFRELVLHGPSERIAGLAFRDGGTVVENAPRPVIRDIDSI-AFPLRSLRPGRYGE 181

Query: 173 KRGVTAFLTI--QEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQ 230
                +  TI    GC   C+FC      G   +RS   VV+E   L D  + ++  +  
Sbjct: 182 HGSAYSIDTIYTSRGCPWSCSFCANGQMHGKWRARSAENVVEEIALLHDQKMKKLLKI-- 239

Query: 231 NVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL--- 287
                     D    T       + ++     L          +  L++A   L  L   
Sbjct: 240 ---------WDANFLTSIKRAERICDLMIERGLTNFRIMTETRAADLVRAERILPKLKAV 290

Query: 288 -MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDD 346
            +  + + ++S +   L+ +N+++TA +  + I   R     I     FI+G   ET  +
Sbjct: 291 GLNKVGIGIESPNPETLRLLNKQNTADDVEKAIALCRKY--GIGTEGYFILGSLNETASE 348

Query: 347 FRATMDLVDKIGYAQAFSFKYSPRLGTP 374
            R        IG  QA     +P  GT 
Sbjct: 349 SRTYPAYARSIGLQQALFMVMTPYPGTE 376


>gi|312879370|ref|ZP_07739170.1| Radical SAM domain protein [Aminomonas paucivorans DSM 12260]
 gi|310782661|gb|EFQ23059.1| Radical SAM domain protein [Aminomonas paucivorans DSM 12260]
          Length = 342

 Score = 79.6 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 72/225 (32%), Gaps = 23/225 (10%)

Query: 160 FERLSIVDGGYNRKRG----VTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL--SQVVDE 213
            E ++  D    R+ G    +   L     C + C +C +    G  +  SL   Q+   
Sbjct: 17  PELIARADEVRRRRVGDGVWLRGLLEFTNRCTQGCAYCGIRGGNGRAVRYSLTEDQIEAT 76

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT--SHPR 271
            R+  D G     L G       G+  D        L   L  I G       +     R
Sbjct: 77  VRRGWDRGFRTFVLQG-------GEDPDWTTDRLCRLAERLRIILGDQGALTLSCGIKSR 129

Query: 272 DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAI 331
           +    L +A  +         L  ++    +   +    T     + +  +R       +
Sbjct: 130 EDYRRLAEAGANR------YLLRFETSDPELFSRLKPGQTLARRLEALQDLRD--GGFEV 181

Query: 332 SSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
            S F+VG PGET++  R  + L   +         + P   TP +
Sbjct: 182 GSGFLVGLPGETEETRRENLRLCASLKLHMVGIGPFLPHPDTPLA 226


>gi|222099831|ref|YP_002534399.1| Radical SAM domain protein [Thermotoga neapolitana DSM 4359]
 gi|221572221|gb|ACM23033.1| Radical SAM domain protein [Thermotoga neapolitana DSM 4359]
          Length = 551

 Score = 79.6 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 44/290 (15%), Positives = 94/290 (32%), Gaps = 37/290 (12%)

Query: 156 VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK--FCTFCVVPYTRGIEISRSLSQVVDE 213
           ++      +++   +     +   + +  GC++  FCTFC  P   G   SR +  V++E
Sbjct: 154 IDMVAPHGAVILKKHPNFPHIICEIELSRGCERETFCTFCTEPILHGRLTSRKVRSVLEE 213

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
              L   G               G  ++  K +       + E+    R    +      
Sbjct: 214 IESLYRAGCKAFRFGRTANILAYGSDMNAGKPS----PEIIEELYSGTRTVAPSLEVLHT 269

Query: 274 SD----CLIKAHGDLDVLMPY----------LHLPVQSGSDRILKSMNRRHTAYEYRQII 319
            +     L++       ++                V+S  + +LK  N + +  E+ + +
Sbjct: 270 DNANPVYLVRHEKACRKIVETIVRYNTPGDVFSFGVESFDETVLKRNNIQGSPEEFLRAV 329

Query: 320 DRIRSV-------RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA------QAFSFK 366
             +  +        P +    + I G PGET+         + KI         +    K
Sbjct: 330 FIVNEIGGKRVEGVPKLLPGVNLIFGLPGETEQTLEKDYFYLKKI-LDDGYLLRRINIRK 388

Query: 367 YSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEV 416
                GTP     +     +K+      ++K+RE     +   + ++  V
Sbjct: 389 LLVYPGTPVYEYFKTRKHKIKSHLHEKWKRKIRE---EIDHEMLKRVFPV 435


>gi|222100094|ref|YP_002534662.1| Mg-protoporphyrin IX monomethyl ester oxidative cyclase-related
           protein [Thermotoga neapolitana DSM 4359]
 gi|221572484|gb|ACM23296.1| Mg-protoporphyrin IX monomethyl ester oxidative cyclase-related
           protein [Thermotoga neapolitana DSM 4359]
          Length = 441

 Score = 79.6 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 56/313 (17%), Positives = 103/313 (32%), Gaps = 33/313 (10%)

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR-- 148
           K +   +     VV+ G  A A  E ILR+     VV+G        +L+E     ++  
Sbjct: 77  KIAERAKACGTTVVMGGPHATAFYETILRQGLCDYVVLGEGER-AFSDLVESIANKEKHP 135

Query: 149 -------VVDTDYSVEDKFERLSIVDGGYNRKRGVTAF-----------LTIQEGCDKFC 190
                  V D D  V       ++ D  +  +  V  +           L    GC   C
Sbjct: 136 HIPGIAYVRDGDIFVLPSRFIENLDDLPFPDREKVYLYRTKFAGERATSLITSRGCPFNC 195

Query: 191 TFCVVPYTRGIEIS-RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSD 249
            FC      G  I  RS+  VVDE + L   G   +     N            K   + 
Sbjct: 196 EFCSASQFMGRRIRWRSVENVVDELKILKKMGYGSVIFFDDNFTIN-------PKRVVNL 248

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
               L +        ++ +      + +++A          L +  +S  D +L+   + 
Sbjct: 249 CEEMLRKDLRFKWWAFSRADELLGHEDMVEAM--SKAGCKMLFIGFESADDEVLEEYGKN 306

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369
             +     ++  ++  R  I + + F++G   +T      T+    K+  +       +P
Sbjct: 307 LKSGIAFDVVKFLKKYR--IDVFASFVIGALKDTKKTIEKTVKFARKLKASIVQFSILTP 364

Query: 370 RLGTPGSNMLEQV 382
             GT     L+ +
Sbjct: 365 YPGTALFEKLKHL 377


>gi|193212098|ref|YP_001998051.1| radical SAM domain-containing protein [Chlorobaculum parvum NCIB
           8327]
 gi|193085575|gb|ACF10851.1| Radical SAM domain protein [Chlorobaculum parvum NCIB 8327]
          Length = 474

 Score = 79.6 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 48/313 (15%), Positives = 98/313 (31%), Gaps = 40/313 (12%)

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             L   R  + +         V++ G       EE    +   + +V  +       LL+
Sbjct: 75  RTLEATRAYEIADEFRRHGKTVILGGLHISFNPEE---AAKHADCIVVGEADNLWTTLLD 131

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNR----------KRGVTAFLTIQEGCDKFCT 191
                +  +   Y  +D     SI    Y R              +  + +  GC   C+
Sbjct: 132 DVANNR--LKERYDADDFPPVKSITPINYARIAEASKRTKVDGTKSIPIYVTRGCPFNCS 189

Query: 192 FCVVPYTRG-IEISRSLSQVVDEARKLIDNGVCE--------ITLLGQNVNAWRGKGLDG 242
           FCV P   G    +++   +  +  +                  L  +N+          
Sbjct: 190 FCVTPNFTGKKYRAQNPESLKQQVEEAKKYFFKANGKNSKPWFMLTDENLGI-------- 241

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
            K    + L  L E      + ++     +  +  +     +D    ++   ++S     
Sbjct: 242 NKKKLWEALDLLKECD----ITFSVFLSINFLEDPVTVKKLVDAGCNFVLAGLESIKQST 297

Query: 303 LKSMNRRH--TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
           L+  N+ H  +A +Y +II+  R     + I  +F+     +T +D    +  V+K    
Sbjct: 298 LEHYNKGHVNSAEKYTKIIEDCRQA--GLNIQGNFLFNPAIDTFEDIDELVQFVEKNRIF 355

Query: 361 QAFSFKYSPRLGT 373
                  +P  GT
Sbjct: 356 MPIFQIITPYPGT 368


>gi|322417744|ref|YP_004196967.1| Radical SAM domain-containing protein [Geobacter sp. M18]
 gi|320124131|gb|ADW11691.1| Radical SAM domain protein [Geobacter sp. M18]
          Length = 619

 Score = 79.6 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 72/220 (32%), Gaps = 14/220 (6%)

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           +  E +      + G  +      A   +  GCD  C+FC      G     S+ +V  E
Sbjct: 157 HPAELESIPSPYLSGRLDPTAPGGALWQLSRGCDFACSFCFDHKGGGGVRRFSMERVEAE 216

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
            R      V ++ +L    N               ++L  + ++   V   +       +
Sbjct: 217 LRLFARLKVPQVFVLDSTFNKI--------PKRAKEILRLIKKVAPRVHFHFEV-RSEFI 267

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
              + +       +   L + +QS    +L+++ R     ++      +           
Sbjct: 268 DPEMAELFAS---ITCSLQIGLQSADPAVLRAVGRGFDRDDFVNRAFLLNQS--GAIFGF 322

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
           D I G PG+T + FR ++D    +       F  +   GT
Sbjct: 323 DLIYGLPGDTPELFRFSLDFALSLYPNHLDIFPLAVLPGT 362


>gi|306820776|ref|ZP_07454401.1| radical SAM domain protein [Eubacterium yurii subsp. margaretiae
           ATCC 43715]
 gi|304551166|gb|EFM39132.1| radical SAM domain protein [Eubacterium yurii subsp. margaretiae
           ATCC 43715]
          Length = 574

 Score = 79.6 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 56/370 (15%), Positives = 130/370 (35%), Gaps = 46/370 (12%)

Query: 37  NVYDSLRMEDMFFSQGYERVNSMDD--ADL------IVLNTCHIREKAAEKVYSFLGRIR 88
           N+ D   +  +   + Y    ++ D  AD+      ++  +C+I           +  I 
Sbjct: 25  NIADIEGI-SVLVKE-YTINENLQDIFADIFSDTYDLIAFSCYIWN---------IEYII 73

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
            L N       ++ +++ G     E  E + +    + ++  +      + ++     K 
Sbjct: 74  KLCNDIKIADNNVKILLGGPEVSYESYEFMSKYDFADFIIRDEGEVIFRKFIKSYISNKN 133

Query: 149 VVDT------------DYSVEDKFERLSIVDGGYNRKRG-----VTAFLTIQEGCDKFCT 191
             +             + + E   E L+++ G Y+            +     GC   C 
Sbjct: 134 FSNIPSFLYRKDEKIIENTYEPPIENLALIKGAYDIFNKDDVKDKIVYYETSRGCSYNCA 193

Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLL 251
           +C+              +V+ + +K++D G  +I  + +  N  R + +D        ++
Sbjct: 194 YCL-SSITKKVRFFPYEKVISDIKKIVDAGAKQIKFVDRTFNFDRKRTID--------II 244

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
             L  I       +       + D L+    ++   +    + VQS +   +KS+NR   
Sbjct: 245 KYLCSIDNGSINFHFEITAHILQDDLLDMLKNVRQGLFQFEIGVQSTNKLTIKSVNRVDN 304

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
             + ++ + +I+S   +I    D IVG P E     + + + V  +              
Sbjct: 305 FDKIKEKVTKIKS-FGNIHQHLDLIVGLPYEDITSLKKSFNDVMSLRPDNLQLGFLKVLK 363

Query: 372 GTPGSNMLEQ 381
           G+P  +M ++
Sbjct: 364 GSPIKSMTDE 373


>gi|310779131|ref|YP_003967464.1| Radical SAM domain protein [Ilyobacter polytropus DSM 2926]
 gi|309748454|gb|ADO83116.1| Radical SAM domain protein [Ilyobacter polytropus DSM 2926]
          Length = 552

 Score = 79.6 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 40/278 (14%), Positives = 95/278 (34%), Gaps = 24/278 (8%)

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA----- 143
            L     K   +  V++ G       ++I+  +P ++ ++  +      +LL  +     
Sbjct: 75  KLVKEIKKIMPNTSVILGGPEVSYLTDKIMHENPEIDFIITGEGEKSTLDLLSESIEDVK 134

Query: 144 -----RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTA--FLTIQEGCDKFCTFCVVP 196
                + G+   +         + +         K       +     GC   C++C + 
Sbjct: 135 GVYYRKEGQIKFNGYKPPISNLDEIPFPYSEEELKNSKNKILYYESSRGCPFECSYC-MS 193

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256
                    SL +V ++ +K +  G+  I  + +  N  + + +D  K    +    +  
Sbjct: 194 SLDKSVRYFSLERVKEDLKKFLQEGITLIKFVDRTFNIDKRRYMDLWKFLLENYREEV-- 251

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
                   +         +  I     +        + VQ+ +++ +K++ R +     +
Sbjct: 252 ------TFHFEISGDLFDEETIAFLEKIPQGFFQFEIGVQTINEKTMKAIKRENDLERLK 305

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
             + RI+    +I +  D I G P E  D F+ + D V
Sbjct: 306 NNVLRIKE---NIHLHLDLIAGLPYEDYDTFKNSFDYV 340


>gi|163787102|ref|ZP_02181549.1| Mg-protoporphyrin IX monomethyl ester oxidative cyclase
           [Flavobacteriales bacterium ALC-1]
 gi|159876990|gb|EDP71047.1| Mg-protoporphyrin IX monomethyl ester oxidative cyclase
           [Flavobacteriales bacterium ALC-1]
          Length = 487

 Score = 79.6 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 37/238 (15%), Positives = 78/238 (32%), Gaps = 16/238 (6%)

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
           +      D  +         +     T  +    GC   C +C  P       S S   +
Sbjct: 178 ELPLPAWDLIDIEPYKQIWASGGNEFTLNIATTRGCPFKCNWCAKPIYGNRYNSHSPEYI 237

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270
               + L +         G N   W    + G K  +        + + L    Y  S  
Sbjct: 238 TKHIKYLSET-------YGVN-RFWMCDDIFGLKPNWVQNFNKALKKEQLSISYYIQSRV 289

Query: 271 R-DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329
              + +  I A  +    +  + +  +SGS +IL +M++  T  +  +    ++     +
Sbjct: 290 DLLLKEDTIDALAESG--LEEVWVGAESGSQKILDAMDKDTTVEQIYKATRLLKEKF--V 345

Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
            ++     G+  ET +D   T+ ++  +           P  GT      ++V +++K
Sbjct: 346 RVAFFIQFGYLNETKEDIAKTVAMIKALVPDNLGVSVSYPLPGT---KFYDKVKDDLK 400


>gi|118581739|ref|YP_902989.1| radical SAM domain-containing protein [Pelobacter propionicus DSM
           2379]
 gi|118504449|gb|ABL00932.1| Radical SAM domain protein [Pelobacter propionicus DSM 2379]
          Length = 555

 Score = 79.2 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 41/195 (21%), Positives = 72/195 (36%), Gaps = 14/195 (7%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGI-EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK 238
           +    GC   C FC  P   G    + S+ +V+ E + +       + L+  +       
Sbjct: 243 IHTSRGCPFSCVFCSNPSLHGKKVRAYSVDRVISEVKAMKYQHAMTVLLIEDD------- 295

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
               +K     +L  LS +   +R+ +         D  I A          + L V+SG
Sbjct: 296 HFFFDKRRAKKILNELSRLD--IRIEFPNGIAVYSIDEEIAALL-SAAGTTTVALAVESG 352

Query: 299 SDRILK-SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
           SD +LK  + +       +  +  +R    DI   +  ++G PGE  +    T+DL+  I
Sbjct: 353 SDYVLKELIGKPLKTSMVKNKVYLLRK--HDIQCHAFIVIGLPGEMPEHREETLDLLLNI 410

Query: 358 GYAQAFSFKYSPRLG 372
           G+         P  G
Sbjct: 411 GFDWTHIGCADPIFG 425


>gi|15668448|ref|NP_247246.1| hypothetical protein MJ_0274 [Methanocaldococcus jannaschii DSM
           2661]
 gi|3219888|sp|Q57722|Y274_METJA RecName: Full=Uncharacterized protein MJ0274
 gi|1590999|gb|AAB98258.1| conserved hypothetical protein [Methanocaldococcus jannaschii DSM
           2661]
          Length = 543

 Score = 79.2 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 53/331 (16%), Positives = 123/331 (37%), Gaps = 42/331 (12%)

Query: 176 VTAFLTIQEGCDK----FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQN 231
           + A +    GC +     C+FC  P   G+   R    ++DE + L + G+    +  Q 
Sbjct: 207 IIAEIETYRGCPRALTGGCSFCTEPRRFGLPKFRDEKDIIDEIKVLYNEGIKYFRIGRQP 266

Query: 232 VNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLD------ 285
                      ++      + ++ ++   +R   +      + +         +      
Sbjct: 267 CMFSYKSIDSEKEEVPKPNVEAIEKLFKGIRN-VSNPKVLHIDNANPAVIARHEDESREV 325

Query: 286 -----VLMPYLHL---PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV--------RPDI 329
                      ++    V+S  ++++K+ N   T  +  + ++ +  V         P +
Sbjct: 326 AKILVKYCTSGNVAAFGVESFDEKVIKANNLLTTPEDVLKAVEILNEVGGKRGETGLPYL 385

Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF------KYSPRLGTPGSNMLEQVD 383
               + + G  GE  + F    + + +I Y + F        +  P  GT  +  L+ + 
Sbjct: 386 LPGINLLFGLKGERKETFTINFEYLKEI-YDRGFMIRRINIRQVVPFFGTDIT--LKDIK 442

Query: 384 ENVKAERL-LCLQKKLREQQVSFNDACV---GQIIEVLIEKHGKEKGKLVGR--SPWLQS 437
           +  K ++L L  ++K+RE+  +     V   G I+  +  +  + +    GR    +   
Sbjct: 443 KAEKRKKLFLWFKEKVREEIDNKMLKRVVPKGTILRDVFVEVKEREDLYFGRQFGSYPLL 502

Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           V +  KN  IG+ + V + D    ++ G++V
Sbjct: 503 VGILDKNLKIGEFVDVEVVDYGRRSITGKVV 533


>gi|3820554|gb|AAC84027.1| Mg-protoporphyrin IX monomethyl ester oxidative cyclase BchE
           [Heliobacillus mobilis]
          Length = 566

 Score = 79.2 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 61/383 (15%), Positives = 121/383 (31%), Gaps = 52/383 (13%)

Query: 43  RMEDMFFSQGYERVNSMDD----------ADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92
            +     + GY  +  +D           A++I  N   +   +A  +   + + ++   
Sbjct: 28  YIGGTLKAAGYTNIKFIDAMTEDLPDDVLAEIIRKNQPDVVLASA--ITPMIYKAQDTLR 85

Query: 93  SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVV-----------------GPQTYYR 135
              +   +   V+ G        +IL  +P ++ +V                 G     R
Sbjct: 86  VAKESNPNCKTVLGGIHPTFMYSQILSEAPWIDYIVRGEGEEIVVNLMNVIAAGTDIKDR 145

Query: 136 LPEL-LERARFGKRVVDTDYSVEDKFERLSIVDGG-------YNRKRGVTAFLTIQEGCD 187
              L +     GK V    +      + L+            Y       A      GC 
Sbjct: 146 KDVLGIAYLEDGKVVATPAHPPIKDLDSLTPDWSILDWDKYIYIPLNTRVAVPNFARGCP 205

Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDEARKLI-DNGVCEITLLGQNVNAWRGKGLDGEKCT 246
             C FC           R+  + VDE   L+ D+ V    L  +     R K +      
Sbjct: 206 FTCRFCSQWKFWRTYRVRNPKKFVDEIETLVKDHKVGFFILADEEPTINRDKFV----AM 261

Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306
             +L+    ++   +  R T          L+  +    ++  ++ L  ++ +   L   
Sbjct: 262 CQELIDRKLDVHWGINTRVTDILR---DAHLLPFYRKAGLV--HISLGTEAATQMNLDRF 316

Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
            +  T  E ++ ID I++    +   + FI+G   ET +    T  L             
Sbjct: 317 RKETTMEENKRAIDMIKAN--GMVAEAQFIMGLENETVETIEETFQLARYWDADMVNWNM 374

Query: 367 YSPRLGTPGSNMLEQVDENVKAE 389
           Y+P    P S + E++ + V+  
Sbjct: 375 YTPW---PFSELFEELGDKVEVR 394


>gi|304437413|ref|ZP_07397372.1| conserved hypothetical protein [Selenomonas sp. oral taxon 149 str.
           67H29BP]
 gi|304369669|gb|EFM23335.1| conserved hypothetical protein [Selenomonas sp. oral taxon 149 str.
           67H29BP]
          Length = 569

 Score = 79.2 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 41/185 (22%), Positives = 74/185 (40%), Gaps = 14/185 (7%)

Query: 183 QEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG 242
             GC   C +C V +   +   RS+  V DE + L D GV +   +    N    +    
Sbjct: 57  TRGCPYRCFYCDVQHLTPMHRRRSVQNVFDEVKYLHDIGVRKSEFIDDAFNVNVKE---- 112

Query: 243 EKCTFSDLLYSLSEIKGLVRLRY-TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
               F      + + K  +   + +      + +  I    +       ++L ++S S R
Sbjct: 113 ----FKAFFRKVIDSKMDMSFYFQSGLRGDLLDEEAIDLMVEGGT--KSMNLSLESASPR 166

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL---VDKIG 358
           + K M +       R+ +D I    P I I  + + GFP ET+++ +AT+D    V  + 
Sbjct: 167 LQKLMGKYLRIERLRENLDYIVRTYPQIIIGLNAMHGFPTETEEEAQATVDFVMQVKWLH 226

Query: 359 YAQAF 363
           +AQ  
Sbjct: 227 FAQLH 231


>gi|158521003|ref|YP_001528873.1| radical SAM domain-containing protein [Desulfococcus oleovorans
           Hxd3]
 gi|158509829|gb|ABW66796.1| Radical SAM domain protein [Desulfococcus oleovorans Hxd3]
          Length = 600

 Score = 79.2 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 53/323 (16%), Positives = 110/323 (34%), Gaps = 25/323 (7%)

Query: 62  ADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRS 121
           AD + ++   I++++  +  +   R+               VV  G    +  EEI    
Sbjct: 71  ADAVFVSAMIIQQESLRQAIALCNRLNK------------PVVAGGPYPTSSHEEIA--- 115

Query: 122 PIVNVVVGPQTYYRLPELLERARFG-KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFL 180
             V+  V  +    L E +     G  R +    +  D    ++       R+   +  +
Sbjct: 116 -GVDHFVLGEAEAVLAEFIADYEAGTARPMYHGDTRPDITYSVTPRFDLLKREAYASMAV 174

Query: 181 TIQEGCDKFCTFCVVPYTRG-IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
               GC   C FC +    G     +S   V+ E   L   G  +   +  +   + G  
Sbjct: 175 QYSRGCPFKCEFCDIWVVYGNKPRLKSAENVLAELDTLYRLGWKDAVFMVDD--NFIGNK 232

Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
              +K     L+        +       S        L++     D     + + +++ S
Sbjct: 233 SRVKKELLPALIKWQKAHNYVFEFYTEASINMADDAELMRLM--SDAGFNQVFVGIETPS 290

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVR-PDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
              L+   +  +      + D +R+++   + + + FI+GF  +T+D F   +  + + G
Sbjct: 291 KEALEETGK--SQNLKYDLKDAVRAIQQHGMEVMAGFIIGFDSDTEDIFERQIAFIQETG 348

Query: 359 YAQAFSFKYSPRLGTPGSNMLEQ 381
             +A         GT   N LE+
Sbjct: 349 IPKAMVGLLHALPGTVLYNRLEK 371


>gi|53804965|ref|YP_113360.1| oxygen-independent coproporphyrinogen III oxidase family protein
           [Methylococcus capsulatus str. Bath]
 gi|53758726|gb|AAU93017.1| putative oxygen-independent coproporphyrinogen III oxidase family
           protein [Methylococcus capsulatus str. Bath]
          Length = 504

 Score = 79.2 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 59/341 (17%), Positives = 97/341 (28%), Gaps = 26/341 (7%)

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT---YYRLPELL 140
           +     L         +L+VV+ G     E E+         +V GP          ++L
Sbjct: 69  VEETARLVALLKSVRPELIVVLGGPEVSHEWEQQPITRLADYIVGGPGELVFSRLCRDIL 128

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
                  R +  +    D  E L               ++    GC   C FC+    R 
Sbjct: 129 SGTPPAGRFLRAELPDLDALE-LPYTCYDDQDIAHRLIYVEASRGCPFKCEFCLSALDRT 187

Query: 201 IEISRSLS--QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258
               R     + +     L   GV     + +  N   G        +   L + L +  
Sbjct: 188 A---RPFETGRFLAAMEDLYRRGVRHFKFVDRTFNLNIG-------TSLRILEFFLDKAD 237

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
             + L +    P  + D L +A          L + VQS    +   ++RR         
Sbjct: 238 PSLFLHFEVI-PDHLPDRLKEALARFPPGCLQLEIGVQSFDPEVQARISRRQDNAATEAN 296

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP---- 374
           +  +R       +  D I G PGET + F    D +  +   +          G P    
Sbjct: 297 LSWLRRHT-HAHLHVDLIAGLPGETLEGFARGFDRLIALDPHEIQVGILKRLRGAPIDRH 355

Query: 375 ----GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVG 411
               G         NV    +L      R  + +     VG
Sbjct: 356 TRSCGMRYNPHPPYNVVRTDVLDFMALQRLNRFARYWDLVG 396


>gi|261377842|ref|ZP_05982415.1| lipoyl synthase [Neisseria cinerea ATCC 14685]
 gi|269146147|gb|EEZ72565.1| lipoyl synthase [Neisseria cinerea ATCC 14685]
          Length = 327

 Score = 79.2 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 42/250 (16%), Positives = 85/250 (34%), Gaps = 23/250 (9%)

Query: 127 VVGPQTYYRLPELLERARFGKRVVDT-----DYSVEDKFERLSIVDGGYNRKRGVTAFLT 181
           VV  +   + PE +     GK+  +      +  +    E  S  +      +G   F+ 
Sbjct: 28  VVPLEQKLKKPEWIRAKLPGKKFFEIKNILREQKMHTVCEEASCPNISECFTKGTATFMI 87

Query: 182 IQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD 241
           + + C + C FC V + R   +     +  + A  +    +  + +   +    R    D
Sbjct: 88  MGDICTRRCPFCDVGHGRPNML--DPDEPKNLAESVKAMNLRYVVITSVD----RDDLRD 141

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV-LMPY---LHLPVQS 297
           G    F+D + ++ E     ++       R   D  ++   +    +M +    H  +  
Sbjct: 142 GGAQHFADCIKAIRETSPNTKIEILVPDFRGRLDIALEILAETPPDVMNHNLETHPSLY- 200

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
                 K            +++ R + + P I   S  +VG  GETD+D R  M  +   
Sbjct: 201 ------KKARPGANYQHSLELLRRYKEMMPHIPTKSGIMVGL-GETDEDVREIMRDMRAN 253

Query: 358 GYAQAFSFKY 367
                   +Y
Sbjct: 254 NIEMITIGQY 263


>gi|95929999|ref|ZP_01312739.1| Radical SAM [Desulfuromonas acetoxidans DSM 684]
 gi|95133968|gb|EAT15627.1| Radical SAM [Desulfuromonas acetoxidans DSM 684]
          Length = 614

 Score = 79.2 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 43/304 (14%), Positives = 102/304 (33%), Gaps = 32/304 (10%)

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           +  L     K   +L+VV  G    A  +          +V G +    + ++++ A   
Sbjct: 76  MVALAAELRKRCPELIVVAGGPEVTAAPQTFRDTGLFDTLVCG-EGEEVILQIVDAADR- 133

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLT--IQEGCDKFCTFCVVPYTRGIE-- 202
              ++  Y      + L  V    +        +   +  GC   C+FC     RG    
Sbjct: 134 HNALEPLYRNSGPIDLLHQVSPWLDGSLVPGEGVLWEVSRGCPFRCSFCF--DARGDHGV 191

Query: 203 ----ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258
                SR   ++    +  +      + +L    N    +G          L+  ++   
Sbjct: 192 RTMAFSRLEQELALFVKHRVSQ----VWVLDSTFNYPAERGKK-----LLRLIKRVA--- 239

Query: 259 GLVRLRYTTSHPRDM-SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
               L +      +   + L +   +   +   + + +QS +  +++ ++R   A  +++
Sbjct: 240 --PHLHFHLEAKIEFIDEELAQLLSE---IHCSVQIGLQSANPDVVRHVHRHFDAELFQE 294

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
            I  +     ++    D + G PG+ +   R +++ V ++       F  +   GT   +
Sbjct: 295 KIALLH--FAEVTYGIDLMYGLPGDDEAGMRHSLEFVLQLQPNHIDLFPLAVLPGTELYH 352

Query: 378 MLEQ 381
              Q
Sbjct: 353 QHSQ 356


>gi|268324584|emb|CBH38172.1| conserved hypothetical protein, radical SAM superfamily [uncultured
           archaeon]
          Length = 519

 Score = 79.2 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 50/291 (17%), Positives = 115/291 (39%), Gaps = 23/291 (7%)

Query: 81  YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140
           Y+ +     +K   +K   + +VV  G  A    +E +     ++ V   +    +P + 
Sbjct: 131 YNRIKFFELMKKPVMK---EKIVVAGGKAAWQLTDESIMDKLNIDYVHLGEGEITVPAMF 187

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
                G+ +  T    +   + +  + G       +   + I  GC + C+FC  P  + 
Sbjct: 188 TSILAGETLPRTIKGKDPDADAIPNIGGAT-----IHGLVEISRGCGRGCSFC-TPNMQ- 240

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
               +S+  +V +    ++ G   I+L  +++  +  +G+  ++    +L   ++ +KG+
Sbjct: 241 RLRFKSIEHIVRDVAVNVNAGQTAISLHSEDLLRYGARGIAPDEERVLNLFRHVTAVKGI 300

Query: 261 VRLRYTTSH--PRDMSDCLIKAHGD-----LDVLMPYLHLPVQSGSDRILKSMNRRHTA- 312
            R+  +            L+ A  D     LD         +++GS+R++        A 
Sbjct: 301 ERIGASHISLASVYHEPELLSAISDLCYSVLDRDWMGAQTGIETGSERLIAKHMCGKAAP 360

Query: 313 ---YEYRQIIDRIRSVRPD--IAISSDFIVGFPGETDDDFRATMDLVDKIG 358
               ++ +I+     +  D     ++  I G P ET DD   +++LV+ + 
Sbjct: 361 SPPEKWHEIVTHAFGILDDNNWFNAATMINGLPSETADDVIKSIELVEDLK 411


>gi|308275144|emb|CBX31741.1| Uncharacterized methyltransferase sll1242 [uncultured
           Desulfobacterium sp.]
          Length = 492

 Score = 79.2 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 60/318 (18%), Positives = 114/318 (35%), Gaps = 32/318 (10%)

Query: 62  ADLIVLNTCHI-REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRR 120
           AD++ +    + RE A +     + R + L         +L VV  G +  +E +E    
Sbjct: 66  ADMVFIGGMAVQRESAKQ----IIARCKAL---------NLKVVAGGPLFTSEPDEF--- 109

Query: 121 SPIVNVVVGPQTYYRLPELLERARFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAF 179
              V+ +V  +     P  L   + G+ + +       D  +  +        KR  +  
Sbjct: 110 -KEVDHLVLDEAELTFPAFLSDLQNGQPKKIYRASGFCDLCDTPAPSWDLIKTKRYASMS 168

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISR--SLSQVVDEARKLIDNGVC-EITLLGQNVNAWR 236
           +    GC   C FC V    G   SR  +  Q++ E   +   G    I  +  N    +
Sbjct: 169 IQFSRGCPFNCEFCNVTTLFG-HRSRLKTPQQIISELDLIYTLGWRGSIFFVDDNFIGNK 227

Query: 237 GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQ 296
           G     +      L+    + KG V     + +  D    L+     +      + + ++
Sbjct: 228 G---YLKTHLLPALIEWRKDKKGCVFFTEASINLAD-DPELLDLM--VKAGFDAVFIGIE 281

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSV-RPDIAISSDFIVGFPGETDDDFRATMDLVD 355
           S  +  L   ++  T  + R +++ +  + R  + +   FIVGF  +    F+  +D + 
Sbjct: 282 SPDEASLTECHK--TQNKNRDLLESVAIIHRSGLQVMGGFIVGFDNDMPSIFQKQIDFIQ 339

Query: 356 KIGYAQAFSFKYSPRLGT 373
           K G A A         GT
Sbjct: 340 KSGIATAMVGMLQAIPGT 357


>gi|295681473|ref|YP_003610047.1| radical SAM protein [Burkholderia sp. CCGE1002]
 gi|295441368|gb|ADG20536.1| Radical SAM domain protein [Burkholderia sp. CCGE1002]
          Length = 510

 Score = 78.8 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 58/323 (17%), Positives = 108/323 (33%), Gaps = 36/323 (11%)

Query: 79  KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPE 138
             YSFL RIR++  + ++    + +V+ G       E++L        +V    +   PE
Sbjct: 77  SGYSFLDRIRDIV-AMLRRARAVPIVMGGAGYSVMPEKLLAYLDADFGIVREGEFS-FPE 134

Query: 139 LLERARFGKRVVDTDYSVEDK---------------------FERLSIVDGGYNRKRGVT 177
           LL     G+        V                          +  +V+  +   +G  
Sbjct: 135 LLTCLEEGRSFTHISGLVYRDTAGVHATPLAPNTCGPLASIGPHKRELVNNPHYFAKGGQ 194

Query: 178 AFLTIQEGCDKFCTFCVVPYTRGIEIS-RSLSQVVDEARKLIDNGVCEITLLGQNVNAWR 236
             +  + GC++ C +CV P  +G  +  R    VV E   L + GV    +     N   
Sbjct: 195 IGIETKRGCNRSCIYCVEPLIKGRSVRMREPDDVVAEMASLEERGVNVFHINDSEFNLSV 254

Query: 237 GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQ 296
                      +     +          Y    PR   D L  A          ++  V 
Sbjct: 255 AHP-------MALCAAIIRHGLAGKIQWYAYGMPRPFPDELAAAMKAAG--CVGMNFGVD 305

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
           + S+ +LK + R   A +    ++   + R  +    + + G PGET +  R T++ + +
Sbjct: 306 TASETMLKILRRTFGAPDIEHAVNT--AKRHGLEHIIELLFGAPGETQETARETIEFIKR 363

Query: 357 IGYAQAF-SFKYSPRLGTPGSNM 378
           +   +   +       GT    M
Sbjct: 364 VDPERVSVTVGLRIFPGTELEQM 386


>gi|91976962|ref|YP_569621.1| radical SAM family protein [Rhodopseudomonas palustris BisB5]
 gi|91683418|gb|ABE39720.1| Radical SAM [Rhodopseudomonas palustris BisB5]
          Length = 605

 Score = 78.8 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 47/280 (16%), Positives = 100/280 (35%), Gaps = 20/280 (7%)

Query: 105 VAGCVAQ---AEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFE 161
           V+GC+A     + +        V +  G +   R  +LL  A  G   +   Y+  ++  
Sbjct: 135 VSGCIAMLPGIQPDLQQALDLGVTLFAG-ELEGRCDDLLRDAASG--ALKPMYNYLNELP 191

Query: 162 RLSIVDGGYNRKRGVTAFLTIQ------EGCDKFCTFCVVPYTRGI-EISRSLSQVVDEA 214
            L         +  +    ++Q       GC   C+FC +   +G     RS   +    
Sbjct: 192 ALEGAPTPILPRHYLKGTFSLQTSFDAGRGCPYQCSFCTIINVQGRKSRGRSADDIERLV 251

Query: 215 RKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMS 274
           R  +  GV    +   N    +   +  ++   +      +  +  ++L           
Sbjct: 252 RANMAQGVNWFFMTDDNFARNKDWEVILDR-LAALRREFAAAGQKDIKLVIQVDTLCHKI 310

Query: 275 DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA-YEYRQIIDRIRSVRPDIAISS 333
           D  I+      V+     L ++S + + L + N+R     EYRQ++   +     +   +
Sbjct: 311 DGFIEKARAAGVVR--TFLGLESINPQNLAAANKRQNKITEYRQMLQAWKQA--GVITYA 366

Query: 334 DFIVGFPGETDDDFRATMDLV-DKIGYAQAFSFKYSPRLG 372
            +I+GFP +T +     + ++  ++       F  +P  G
Sbjct: 367 GYILGFPHDTPESIAEDIAIIQKELPLDILEFFCLTPLPG 406


>gi|170288989|ref|YP_001739227.1| cobalamin B12-binding domain-containing protein [Thermotoga sp.
           RQ2]
 gi|170176492|gb|ACB09544.1| cobalamin B12-binding domain protein [Thermotoga sp. RQ2]
          Length = 441

 Score = 78.8 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 56/361 (15%), Positives = 116/361 (32%), Gaps = 50/361 (13%)

Query: 43  RMEDMFFSQGYERV---NSMDDADLIVLNTCHIRE------KAAEKVYSFLGRIRNLKNS 93
            +      +G+       +++  DL   N    R+       A    +  + RI     +
Sbjct: 28  YISSSLKRKGHSVALIDMNVEKFDLERFN---FRDYDVVGISADTVRFPVVERIAKKAKA 84

Query: 94  RIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR----- 148
           +     ++ VV+ G  A A   EIL++     VV+G        +L+E     ++     
Sbjct: 85  Q-----NVTVVMGGPHATAYYHEILQKGLCDYVVLGEGER-AFSDLVESIASNEKYPLIP 138

Query: 149 ---------VVDTDYSVEDKFERLSIVDGGYNRKRGVT------AFLTIQEGCDKFCTFC 193
                    V+       +  + L   D                  L    GC   C FC
Sbjct: 139 GVAYMKDGEVIALPSRFLENLDDLPFPDREKVHLYRTKFAGERATSLITSRGCPFNCEFC 198

Query: 194 VVPYTRGIEIS-RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLY 252
                 G  I  RS+  V+DE + L   G   +     N            K   +    
Sbjct: 199 SASQFMGRRIRWRSIENVIDELKILKKLGYGSVIFFDDNFTIN-------PKRVVNLCEE 251

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
            + +        ++ +      + +++A          L +  +S +D +L+   +   +
Sbjct: 252 MMRKDLRFKWWAFSRADELLGREDMVEAM--SKAGCRMLFIGFESANDEVLEEYGKNLKS 309

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
                +++ ++  +  I + + F++G   +T      T+ L  K+  +       +P  G
Sbjct: 310 DIAFDVMNLLKKYK--IDVFASFVIGALKDTRKTIEKTVKLAKKLKASIVQFSILTPYPG 367

Query: 373 T 373
           T
Sbjct: 368 T 368


>gi|301164603|emb|CBW24162.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Bacteroides fragilis 638R]
          Length = 377

 Score = 78.8 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 47/234 (20%), Positives = 83/234 (35%), Gaps = 22/234 (9%)

Query: 186 CDKFCTFCVV-PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR---GKGLD 241
           C   C +C     TR     R +  +  E        +    L G+ +       G    
Sbjct: 11  CKTRCIYCDFYSTTRSEWKGRYIEALCKELE------MRYTYLKGKPIETLYFGGGTPSQ 64

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPR--DMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
            ++  F  +  ++  I G+      T      D+    ++   +L      + + +Q+  
Sbjct: 65  LDEKDFRKVFDTVRRIYGMENCHEITLEANPDDLCPEYLQMLSELP--FNRISMGIQTFD 122

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIA-ISSDFIVGFPGETDDDFRATMDLVDKIG 358
           D  LK + RRH A +  + ++  R+       IS D I G PGET + +   +     + 
Sbjct: 123 DTTLKLLKRRHNAAQAIRAVELCRA--HGFRNISIDLIYGLPGETTERWEKDLQQAIALD 180

Query: 359 YAQAFSFKYSPRLGTPGSNML-----EQVDENVKAERLLCLQKKLREQQVSFND 407
                ++      GTP   ML     E+VDE+        L  +LRE      +
Sbjct: 181 VEHISAYHLIYEEGTPIYKMLQKHQVEEVDEDSSVRFFTLLIDRLREAGYEHYE 234


>gi|322434214|ref|YP_004216426.1| Radical SAM domain protein [Acidobacterium sp. MP5ACTX9]
 gi|321161941|gb|ADW67646.1| Radical SAM domain protein [Acidobacterium sp. MP5ACTX9]
          Length = 469

 Score = 78.8 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 41/264 (15%), Positives = 89/264 (33%), Gaps = 19/264 (7%)

Query: 153 DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVD 212
            +      +    V+      +  +       GC   C +C           R   +VVD
Sbjct: 176 PWPARHAIDLHRYVETWRTHHQQGSVNFITARGCPYRCRWCSHQVYGQTHRRRDPIKVVD 235

Query: 213 EARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
           E   L+     +I  +  +V       +   K +       L        + +      D
Sbjct: 236 EVEWLMKEYTPDIAWVSDDVFTINHDWI--RKYSAEMRRRGLH-------IPFECISRAD 286

Query: 273 -MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAI 331
            +++ ++    +L     +  +  +SGS R+L SM+R     + ++ +   R  +  I  
Sbjct: 287 RLNEEMLDLLAELGCFRIW--IGSESGSQRLLDSMDRGVKVEQVQRAVQMSRERK--IQS 342

Query: 332 SSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-----NMLEQVDENV 386
               + G+ GE  +D  AT+  V        F+    P  GTP        +++      
Sbjct: 343 GMFLMWGYEGEEMEDIEATIRHVSTAQPDIFFTTVSYPIKGTPYYQQIQSKLVQLAPWGK 402

Query: 387 KAERLLCLQKKLREQQVSFNDACV 410
            ++R + ++ +  +   +  D  +
Sbjct: 403 SSDREIKIRGRHSKAYYAHADKLL 426


>gi|332299105|ref|YP_004441027.1| Radical SAM domain protein [Treponema brennaborense DSM 12168]
 gi|332182208|gb|AEE17896.1| Radical SAM domain protein [Treponema brennaborense DSM 12168]
          Length = 626

 Score = 78.8 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/207 (16%), Positives = 72/207 (34%), Gaps = 17/207 (8%)

Query: 178 AFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG 237
           A   +  GC   C++C         +     ++  E    +   V ++ +L    NA   
Sbjct: 234 ALWELARGCPFKCSYCYESKGEKTVVHFPTERIRAELDLFVQKKVRQVFVLDPTYNA--- 290

Query: 238 KGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQS 297
                +K    D+L  +      +   +       +   L +A   +      L + +QS
Sbjct: 291 -----DKKRALDMLAYIRRTAPDIFFHFEC-RAEFLDAALAQAFASIPC---SLQIGLQS 341

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
             + +L  ++R     ++ + I  +           D I G PG++   FR ++D    +
Sbjct: 342 AHEHVLALVHRGFNKKDFIKKIGLLNKS--GAVFGFDLIYGLPGDSLSGFRESIDFAVSL 399

Query: 358 GYAQAFSFKYSPRLGTPGSNMLEQVDE 384
                  F+ S   GT   ++ ++  E
Sbjct: 400 YPNSLEIFRLSVLPGT---DLYDRRSE 423


>gi|307635179|gb|ADI86171.2| cobalamin-binding radical SAM domain iron-sulfur cluster-binding
           oxidoreductase [Geobacter sulfurreducens KN400]
          Length = 472

 Score = 78.8 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 50/312 (16%), Positives = 98/312 (31%), Gaps = 40/312 (12%)

Query: 90  LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVN-VVVGPQTYYRLPELLERARFGKR 148
           L     +   D+ V+  G  A + G  +L R P ++ +V+G              R  ++
Sbjct: 88  LAEGLKELLPDIPVIFGGAHACSVGVSLLDRFPAIDYLVLGEGEQTLYELAAASFRNVEK 147

Query: 149 VV--------------------DTDYSVEDKFERLSIVDGGYNRK-----RGVTAFLTIQ 183
           +                     D D      + RL      Y        +     +   
Sbjct: 148 IPGVGYRRDGVGTLSAARELIADLDTLPFPAYHRLPDFPRRYTLPLFSYPKAPNTSVISS 207

Query: 184 EGCDKFCTFCVVPYTRGIEISRSLSQVVDE-ARKLIDNGVCEITLLGQNVNAWRGKGLDG 242
            GC   C++C            S   +V+  A    D G+  +        A RG+    
Sbjct: 208 RGCPYQCSYCDRSVFSRGFRFNSPEYIVEHLAYLNRDFGIRHVFFYDDLFTADRGR---- 263

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
                      L E + L       +    +   L+            ++  ++SG   +
Sbjct: 264 -----VARFCQLKEARRLPVTYNCIARLEHVDAELLALLKRSG--CWQVNFGIESGDPEV 316

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           +K   + +   E +  +  +R     + +   F++G PGE+ +  R T+D    +   + 
Sbjct: 317 IKKHRKYYGLDEVQTKLAMVRRA--GMRVKGLFMLGLPGESAESIRRTIDYALMLPLDEI 374

Query: 363 FSFKYSPRLGTP 374
              K++P  G P
Sbjct: 375 NVTKFTPFPGAP 386


>gi|21672913|ref|NP_660978.1| BchE/P-methylase family protein [Chlorobium tepidum TLS]
 gi|21645968|gb|AAM71320.1| BchE/P-methylase family protein [Chlorobium tepidum TLS]
          Length = 473

 Score = 78.8 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 51/326 (15%), Positives = 102/326 (31%), Gaps = 33/326 (10%)

Query: 53  YERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQA 112
           +E        DL+ +    ++   A K +    R+R+     +  G  + +    C A  
Sbjct: 77  FEEFPFDRQWDLVGI---SVQTGMASKAFELADRLRSRGVKVVLGGPHVTMFPDSCRA-- 131

Query: 113 EGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNR 172
                       + +V  +      ++L          +         +    V     +
Sbjct: 132 ----------HADCLVHGEADDLWRDVLADLVTDSLKAEYRPDAPPDLQLHRPVSRASLK 181

Query: 173 KRGV--TAFLTIQEGCDKFCTFCVVPYTRGI-EISRSLSQVVDEARKLIDNGVCEITLLG 229
           K     T  +    GC   C FC V    G     R +  +VDE R+  +        + 
Sbjct: 182 KNRYFTTNLVQTGRGCPYQCDFCNVHVLNGRVLRQRKIDHIVDEVRRFSEEDKRIFFFVD 241

Query: 230 QNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMP 289
            ++N        G+     +L   L  +      + TT+  +     L+           
Sbjct: 242 DSIN--------GDPLFARELFKHLIPLNITWFGQATTALGQQ--PELLDTFARSG--CR 289

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP-DIAISSDFIVGFPGETDDDFR 348
            L + ++S      +  +++ T     ++   IR++R   I++   FI G  G+T    +
Sbjct: 290 ALLVGIESIEPSS-RIAHKK-TQNRTDELAGNIRAIRKSGISLYGSFIYGLDGDTLQTPQ 347

Query: 349 ATMDLVDKIGYAQAFSFKYSPRLGTP 374
           A +D +              P  GT 
Sbjct: 348 AILDFIADTRLDVPGINTLRPIPGTK 373


>gi|222479075|ref|YP_002565312.1| Radical SAM domain protein [Halorubrum lacusprofundi ATCC 49239]
 gi|222451977|gb|ACM56242.1| Radical SAM domain protein [Halorubrum lacusprofundi ATCC 49239]
          Length = 625

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 62/372 (16%), Positives = 114/372 (30%), Gaps = 57/372 (15%)

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
           FG R+ D         +   +V    N    +   +    GC   C+FC  P        
Sbjct: 169 FGNRMRDNAEIDRWAEKGAFVVKQHPNHPDYLICEMETSRGCAYRCSFCTEPLYGSPAF- 227

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQ-NVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR- 262
           R    VVDE   L D GV    L  Q ++ A+ G G         +L   + E+   +R 
Sbjct: 228 REAQSVVDEVDALSDRGVKHFRLGRQADILAFGGDGEAPNPDALRELYSGIREVAPDLRT 287

Query: 263 ------LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
                    T +   + S   I+     +         ++S    + +  N   TA E  
Sbjct: 288 LHLDNMNPVTITDYPEASREAIRVIAAHNTPGDTAAFGLESADPVVQEQNNLLVTAEECL 347

Query: 317 QIIDRIRS-------------------------------VRPDIAISSDFIVGFPGETDD 345
           + +  +                                   P +    + + G  GE  +
Sbjct: 348 EAVRVVNEEGGWRPGDTPETTPGADDRVMGPSTGPDASPRLPKLLPGINLVHGLAGERPE 407

Query: 346 DFRATMDLVDKIGYA------QAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLR 399
            +    + +  + Y       +    +     GT  +     + +  K +     Q   R
Sbjct: 408 TYEHNKEFLQTV-YDEGLMLRRINIRQVMAFAGTEMAETGADIAQEHKDQ----FQAYKR 462

Query: 400 EQQVSFNDACVGQIIE---VL--IEKHGKEKGKLVGR-SPWLQSVVLNSKNHNIGDIIKV 453
           E + + ++  + +++    VL  +     + GK  GR       +V       +G  I V
Sbjct: 463 EVRETVDNPMLDRVVPPGTVLPDVHLEYHQDGKTFGRQLGTYALLVAVPGERELGTAIDV 522

Query: 454 RITDVKISTLYG 465
            ITD    ++ G
Sbjct: 523 AITDHGYRSVTG 534


>gi|52550390|gb|AAU84239.1| Fe-S oxidoreductase [uncultured archaeon GZfos3D4]
          Length = 530

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 52/287 (18%), Positives = 117/287 (40%), Gaps = 20/287 (6%)

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R++  +  R     + +VV  G  A    +E       ++ V   +    +PE+ +   
Sbjct: 136 NRVKFFELMRKPVMREKIVVAGGKAAWQLADETTMDKLNIDYVHLGEGEITVPEMFKSIL 195

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G+++       E   + +  + G       +   + I  GC + C+FC  P  +     
Sbjct: 196 EGEKLPRITKGKEPNTDEIPNILGAT-----IHGLVEIGRGCGRGCSFC-TPDMQ-RLRF 248

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           +S+  +  +A+  I+ G   I+L  ++V  +  KG+  +      L   ++ I+G+  + 
Sbjct: 249 KSVEHIARDAKTNIEAGQRSISLHSEDVLRYGAKGIAPDDERVMKLFRCVASIEGIKDIG 308

Query: 265 YTTS--HPRDMSDCLIKAHGD-----LDVLMPYLHLPVQSGSDRI----LKSMNRRHTAY 313
            +         +  L+ A  +     LD         +++GS R+    ++       A 
Sbjct: 309 ASHIALATAYHNPGLVNAISEMCYSMLDQEWMGAQTGIETGSARLIAKHMRGKALPSPAE 368

Query: 314 EYRQIIDRIRSVRPD--IAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           ++++I+ +  ++  D     ++  I G PGET DD   +++LV+ + 
Sbjct: 369 KWQEIVTQAFAILDDNNWFNAATMINGLPGETVDDVIKSIELVEDLK 415


>gi|301060852|ref|ZP_07201662.1| radical SAM domain protein [delta proteobacterium NaphS2]
 gi|300445040|gb|EFK08995.1| radical SAM domain protein [delta proteobacterium NaphS2]
          Length = 279

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 45/192 (23%), Positives = 85/192 (44%), Gaps = 19/192 (9%)

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS 248
            C FC     R +   + L ++V+E + +   GV  I     N    +G   D  +    
Sbjct: 1   RCAFCNFTKDRRLMFIKRLDRLVEELKIVSARGVRFIRFTDDNFRHGKGDLNDFSRRIIQ 60

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
           + +     +K +  +R +     D    L++A G ++VL     L ++S   ++L +MN+
Sbjct: 61  ENI----SVKWMTMVRASALERVDF--ELLRASGCIEVL-----LGLESADPQLLANMNK 109

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA------QA 362
             T   Y ++++++ SV   I +S  FI GFPGET +  + T + + +I +         
Sbjct: 110 NATPALYARVVEQLMSV--GIDVSCYFIFGFPGETAETVKKTRNFIRRIEFPELPGTLSW 167

Query: 363 FSFKYSPRLGTP 374
             F +S    +P
Sbjct: 168 ALFPFSVAPLSP 179


>gi|225075288|ref|ZP_03718487.1| hypothetical protein NEIFLAOT_00291 [Neisseria flavescens
           NRL30031/H210]
 gi|224953463|gb|EEG34672.1| hypothetical protein NEIFLAOT_00291 [Neisseria flavescens
           NRL30031/H210]
          Length = 325

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 42/250 (16%), Positives = 84/250 (33%), Gaps = 23/250 (9%)

Query: 127 VVGPQTYYRLPELLERARFGKRVVDT-----DYSVEDKFERLSIVDGGYNRKRGVTAFLT 181
           VV  +   + PE +     GK+  +      +  +    E  S  +      +G   F+ 
Sbjct: 28  VVPLEQKLKKPEWIRAKLPGKKFFEIKNILREQKMHTVCEEASCPNISECFTKGTATFMI 87

Query: 182 IQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD 241
           + + C + C FC V + R   +     +    A  +    +  + +   +    R    D
Sbjct: 88  MGDICTRRCPFCDVGHGRPNML--DPDEPKHLAESVKSMNLRYVVITSVD----RDDLRD 141

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV-LMPY---LHLPVQS 297
           G    F+D + ++ E     ++       R   D  ++   +    +M +    H  +  
Sbjct: 142 GGAQHFADCIKAIRETSPNTKIEILVPDFRGRLDIALEILAETPPDVMNHNLETHPSLY- 200

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
                 K            +++ R + + P I   S  +VG  GETD+D R  M  +   
Sbjct: 201 ------KKARPGANYQHSLELLRRYKEMMPHIPTKSGIMVGL-GETDEDVREIMRDMRAN 253

Query: 358 GYAQAFSFKY 367
                   +Y
Sbjct: 254 NIEMITIGQY 263


>gi|241758715|ref|ZP_04756828.1| lipoyl synthase [Neisseria flavescens SK114]
 gi|261380126|ref|ZP_05984699.1| lipoyl synthase [Neisseria subflava NJ9703]
 gi|241320923|gb|EER57136.1| lipoyl synthase [Neisseria flavescens SK114]
 gi|284796962|gb|EFC52309.1| lipoyl synthase [Neisseria subflava NJ9703]
          Length = 327

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 42/250 (16%), Positives = 84/250 (33%), Gaps = 23/250 (9%)

Query: 127 VVGPQTYYRLPELLERARFGKRVVDT-----DYSVEDKFERLSIVDGGYNRKRGVTAFLT 181
           VV  +   + PE +     GK+  +      +  +    E  S  +      +G   F+ 
Sbjct: 28  VVPLEQKLKKPEWIRAKLPGKKFFEIKNILREQKMHTVCEEASCPNISECFTKGTATFMI 87

Query: 182 IQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD 241
           + + C + C FC V + R   +     +    A  +    +  + +   +    R    D
Sbjct: 88  MGDICTRRCPFCDVGHGRPNML--DPDEPKHLAESVKSMNLRYVVITSVD----RDDLRD 141

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV-LMPY---LHLPVQS 297
           G    F+D + ++ E     ++       R   D  ++   +    +M +    H  +  
Sbjct: 142 GGAQHFADCIKAIRETSPNTKIEILVPDFRGRLDIALEILAETPPDVMNHNLETHPSLY- 200

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
                 K            +++ R + + P I   S  +VG  GETD+D R  M  +   
Sbjct: 201 ------KKARPGANYQHSLELLRRYKEMMPHIPTKSGIMVGL-GETDEDVREIMRDMRAN 253

Query: 358 GYAQAFSFKY 367
                   +Y
Sbjct: 254 NIEMITIGQY 263


>gi|302348262|ref|YP_003815900.1| hypothetical protein ASAC_0462 [Acidilobus saccharovorans 345-15]
 gi|302328674|gb|ADL18869.1| hypothetical protein ASAC_0462 [Acidilobus saccharovorans 345-15]
          Length = 521

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 56/270 (20%), Positives = 98/270 (36%), Gaps = 31/270 (11%)

Query: 118 LRRSPIVNVVVGPQTYYRLPELLE--RARFGKRVVDTDYSVEDKFERL--SIVDGGYNRK 173
             ++   +V+V       + +L++        R +  DYS  ++F  L  SIV    N  
Sbjct: 128 FFKAHGFDVLVTGDPEEYVYDLVKYGEEAASPRAIREDYSKVNRFAVLGASIVRFHPNFG 187

Query: 174 RGVTAFLTIQEGC----DKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLG 229
           + + A +    GC       C+FCV P  RG  I+R    +V E R L + GV    L  
Sbjct: 188 KNLIAEIETYRGCARWVSGGCSFCVEP-LRGRPIARDPMAIVKEIRALYEVGVRNFRLGR 246

Query: 230 QNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLD---- 285
           Q           G +         L  +   +           + +              
Sbjct: 247 QADILVYNSSQLGSEEWPRPSPQELERLFHGIHTEAPNLEVLHIDNVNPGTIARYPEEST 306

Query: 286 ---VLMPYLHLP-------VQSGSDRILKSMNRRHTAYEYRQIIDRIRSV--------RP 327
               ++   H P       V+S   +++K  N + TA E  + I+ I  V         P
Sbjct: 307 EALKVIVKYHTPGDVAALGVESVDPQVVKINNLKVTADEALKAIEIINKVGASRGYNGLP 366

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKI 357
           ++    +FI+G PGE  + +R   + +++I
Sbjct: 367 ELLPGINFILGLPGERRESYRLNREFLEEI 396


>gi|196229208|ref|ZP_03128073.1| Radical SAM domain protein [Chthoniobacter flavus Ellin428]
 gi|196226440|gb|EDY20945.1| Radical SAM domain protein [Chthoniobacter flavus Ellin428]
          Length = 452

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 55/330 (16%), Positives = 108/330 (32%), Gaps = 34/330 (10%)

Query: 54  ERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAE 113
           E +   +  DL+      +    A++ Y      R            + VV+ G      
Sbjct: 51  ETIPFDEPTDLV---AMSVETYTAKRAYQIASEYRR---------RRVPVVMGGFHPSLC 98

Query: 114 GEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRK 173
            +E+ R +  V  V G +     P +L+ AR G+       +       L      +  K
Sbjct: 99  PDEVARYAEAV--VTG-EAEELWPRVLDDARHGRLEKFYRSTSRPTLSGLRPDRSIFRGK 155

Query: 174 RG-VTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDNGVCEITLLGQN 231
           R      +    GC   C FC V          R    ++ E      +G      +  N
Sbjct: 156 RYLPIGLVEAGRGCHFKCDFCAVQTVFAQSQTRRPAGDILTELAAN-RHGKKLFFFVDDN 214

Query: 232 VNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL 291
           + +   +  +  +      +  + +           +H  +  D L+++          +
Sbjct: 215 ITSNLAQAKEFFRALIPLGIRWVGQ------SSINAAHDEEFLDLLVRS------GCQGV 262

Query: 292 HLPVQSGSDRILKSMNRRHTAYE--YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
            +  +S +   L  MN+        + Q +  +R  R  I +   F+ G+ G+  + F +
Sbjct: 263 LIGFESLNPANLAVMNKTFNTARGGFVQALANLRKHR--IRVYGTFVFGYDGDRTESFAS 320

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
           T+D  ++     A     +P  GTP    L
Sbjct: 321 TVDFAEEHAMYIAAFNHLTPFPGTPLYRRL 350


>gi|193213617|ref|YP_001999570.1| radical SAM domain-containing protein [Chlorobaculum parvum NCIB
           8327]
 gi|193087094|gb|ACF12370.1| Radical SAM domain protein [Chlorobaculum parvum NCIB 8327]
          Length = 473

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 49/296 (16%), Positives = 91/296 (30%), Gaps = 29/296 (9%)

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
            +  + +       + VV+ G       +      P  + +V  +      ++L     G
Sbjct: 99  AKAFELADRLRKHGIPVVLGGPHVTMFPDSCR---PHADSLVHGEADDLWADVLRDLTAG 155

Query: 147 ------KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
                 +     D S+     R S+    Y         +    GC   C FC V    G
Sbjct: 156 TLKPEYRADTVPDLSLHRPVSRASLKQSRYFTTN----LVQTGRGCPYQCDFCNVHVLNG 211

Query: 201 I-EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
                R +  +VDE R+   +       +  ++N        G+     +L   L  I  
Sbjct: 212 RVLRQRKIEHIVDEVRRFSRDDKRIFFFVDDSIN--------GDPLFAQELFSKL--IPL 261

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
            +      +        L+            L + ++S      +S +R+ T     ++ 
Sbjct: 262 NISWFGQATTALGQQPELLDTFARSG--CRALLVGIESIEPSS-RSAHRK-TQNRTEELA 317

Query: 320 DRIRSVR-PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
             IR++R   I +   FI G  G+T     A +D + +            P  GT 
Sbjct: 318 GNIRAIRQSGICLYGSFIYGLDGDTLATPAAILDFIQETRLDVPGINTLRPIPGTK 373


>gi|257077013|ref|ZP_05571374.1| Fe-S oxidoreductase [Ferroplasma acidarmanus fer1]
          Length = 537

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 50/292 (17%), Positives = 110/292 (37%), Gaps = 26/292 (8%)

Query: 93  SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDT 152
            ++K+  +  V+V G  A   G   L +   V+ +   +     P L++++  G+     
Sbjct: 131 RKLKQKYNFRVIVGGPAAWQIG---LNKPDFVDTIFNGEAEIDFPVLVKKSLDGE----- 182

Query: 153 DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC-VVPYTRGIEISRSLSQVV 211
               E       I       K G    + +  GC + C+FC + P T     +  +  V 
Sbjct: 183 SLPAEITGRMPDITHIPNIIKPGRFGEVQVTRGCPRGCSFCSITPETY---RTIPMENVE 239

Query: 212 DEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPR 271
            EA   + NG  +I  +  ++  +  K L        +L  ++ ++ G   L +      
Sbjct: 240 AEASLYLKNGYKDIEFITDDIMLYGQKKLTVNHDAIVNLFSTVKKM-GARYLTFPHISAP 298

Query: 272 D--MSDCLIKAHGDLDVLMPYLH----LPVQSGSDRILKSMNR----RHTAYEYRQIIDR 321
              +S   +    ++  L  Y      + +++GS +I+              +++ +I +
Sbjct: 299 AVLVSPDTLFEISEIGGLKEYGAEAPVVGLETGSTKIMHKYMNAKPYPWKPEDWKDVIVK 358

Query: 322 IRSVR--PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
             S+     +       +G+P ET++D + ++D+V  I     ++    P  
Sbjct: 359 ATSIMNQASVFPCYTMTIGYPEETEEDLQQSIDIVQSI-IDSNYTAWIFPLP 409


>gi|189499213|ref|YP_001958683.1| Radical SAM domain-containing protein [Chlorobium phaeobacteroides
           BS1]
 gi|189494654|gb|ACE03202.1| Radical SAM domain protein [Chlorobium phaeobacteroides BS1]
          Length = 723

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 51/312 (16%), Positives = 98/312 (31%), Gaps = 37/312 (11%)

Query: 94  RIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK------ 147
             K   +  V++ G  A A     ++  P ++++   +  Y     LE  +  K      
Sbjct: 111 YKKRHSNTTVILGGPQASATDLASIKAFPEIDMIFRGEAEYGFVSFLESMQENKPGHLYN 170

Query: 148 -------------RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCV 194
                        R  + D  ++     +   D         T  L I  GC   C+FC 
Sbjct: 171 IKGLTFRNSNNIIRNANADPVMDLDSLPVPAYDLDPYINNYKTLSLEIGRGCPYSCSFCS 230

Query: 195 VPYTRGI-EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS 253
                G     +S   ++D+ R +           G +           ++        +
Sbjct: 231 TSTFFGRKFRLKSPGTILDQMRFIKRK-------FGIDNIGLDHDMFSADRKKVRAFCET 283

Query: 254 LSEIKGLVRLRYTTSHPRD-MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
           L  I    +  +  S   D + + L+            +   ++S S R+ KS+N+    
Sbjct: 284 L--IASGEKFYWGCSARVDCVDNDLLALMAQAG--CNGIFFGIESASKRMQKSINKNLDL 339

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD-LVDKIGYAQA--FSFKYSP 369
                 I     +   I      I  FP ETD++   T++  +  + +  A       +P
Sbjct: 340 ANAVDTIAHADKM--GIKSGVSLITAFPDETDEELNNTLNFFIGSLRFDNAAPQIGILAP 397

Query: 370 RLGTPGSNMLEQ 381
             G+P  N  + 
Sbjct: 398 LAGSPLYNKHKD 409


>gi|310659767|ref|YP_003937488.1| radical sam domain-containing protein [Clostridium sticklandii DSM
           519]
 gi|308826545|emb|CBH22583.1| Radical SAM domain protein [Clostridium sticklandii]
          Length = 448

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 59/346 (17%), Positives = 117/346 (33%), Gaps = 57/346 (16%)

Query: 47  MFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRN----------LKNSRIK 96
           +  ++  E +N  +  DL+ +    +      +        R              +  K
Sbjct: 43  IIENENVESINFDEKVDLVAI---TVTVDVMNRAIEIAKEFRKRSVKVVAGGIHITADPK 99

Query: 97  EGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSV 156
                   +   +A+   + IL  +   ++           ++L  +  G+ +V  DY +
Sbjct: 100 GAYGYFDAICVGMAERIWQRILFDAQNDSL------NKIYNDML--SISGQEIVSPDYDI 151

Query: 157 EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC--VVPYTRGIEISRSLSQVVDEA 214
            D  + L             T  ++   GC   C FC           I+R +  V+ E 
Sbjct: 152 IDNSKYL------------YTNIISTSRGCPFECDFCYNSSQSVHKAYINRPIEDVIREI 199

Query: 215 RKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK--GLVRLRYTTSHPRD 272
           + L       I  +  N                S     L++IK  GL      TS+  D
Sbjct: 200 KTL---RTRHIMFIDDNFIG-----------NPSWTKKFLAQIKPLGLKYNAAVTSNIVD 245

Query: 273 MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR-RHTAYEYRQIIDRIRSVRPDIAI 331
           M D L       +     L +  +S +D+ + S+N+ +++  +Y ++++ +      I I
Sbjct: 246 MPDILDDL---KESGCQSLFIGFESINDKAIDSVNKVQNSVGKYERLVEELHKR--GIMI 300

Query: 332 SSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
           ++ F+ G   +    F  T+D + K       S   +P  GT    
Sbjct: 301 NASFVFGLDEDDSSVFEKTLDWIVKNKIETVTSHILTPYPGTRLYE 346


>gi|296188729|ref|ZP_06857116.1| TRAM domain protein [Clostridium carboxidivorans P7]
 gi|296046656|gb|EFG86103.1| TRAM domain protein [Clostridium carboxidivorans P7]
          Length = 68

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 1/67 (1%)

Query: 403 VSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKIS 461
           +  N    G+I E+L+E   K +  KL GR+   + V       +IG ++KV+I      
Sbjct: 2   LKINKKYEGRIEEILVEDFSKNDDTKLTGRTRTGKLVNFPGSKDSIGKLVKVKIVKANSF 61

Query: 462 TLYGELV 468
           +L GE +
Sbjct: 62  SLIGEEI 68


>gi|222055002|ref|YP_002537364.1| radical SAM protein [Geobacter sp. FRC-32]
 gi|221564291|gb|ACM20263.1| Radical SAM domain protein [Geobacter sp. FRC-32]
          Length = 429

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 64/341 (18%), Positives = 110/341 (32%), Gaps = 38/341 (11%)

Query: 47  MFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVA 106
               +  E ++    ADL+ +     +              R  + +       + VV+ 
Sbjct: 42  ALCDENVEPLDVAGHADLVAITAMTPQAP------------RAYEIADQFRARGIRVVMG 89

Query: 107 GCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIV 166
           G  A    +E L     V+ VV  +     P L+     G                L + 
Sbjct: 90  GFHASNLPDEALL---HVDAVVVGEGDLVWPRLVSDFERGTLQPVYRPDAMLDMADLPVA 146

Query: 167 DGGYNRKRGV--TAFLTIQEGCDKFCTFCVVPYTRGI-EISRSLSQVVDEARKLIDNGVC 223
                  +G   T  L    GC   C FC V    G     R + QV+ E   L      
Sbjct: 147 RREIFAGKGYLLTNTLQTTRGCPFDCEFCSVTAFYGRKYRERPVEQVLTELEVLRKQNS- 205

Query: 224 EITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM--SDCLIKAH 281
               +  N+ A R       +   S      S +KG+   ++ +  P D      L++A 
Sbjct: 206 FAFFVDDNLVANR-------RYALSLF----SAMKGMG-FKWLSHAPIDFAGDPELMRAA 253

Query: 282 GDLDVLMPYLHLPVQSGSDRILKSMNR-RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFP 340
           G+   +   + +  +S +   L +M +  + A  Y +     R     I I   F++G  
Sbjct: 254 GESGCI--GMFVGFESLNQESLVAMGKVTNQATSYLEQAKVFRD--HGIGILGSFVLGSD 309

Query: 341 GETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           G+T   F   +   ++     A     +P  GT     LE+
Sbjct: 310 GDTPAIFEPILRFCEEARIEAAIFPILTPYPGTKVRERLEK 350


>gi|163758146|ref|ZP_02165234.1| hypothetical protein HPDFL43_00935 [Hoeflea phototrophica DFL-43]
 gi|162284435|gb|EDQ34718.1| hypothetical protein HPDFL43_00935 [Hoeflea phototrophica DFL-43]
          Length = 567

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 39/197 (19%), Positives = 80/197 (40%), Gaps = 18/197 (9%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRG 237
           +    GC   C FC  P   G E    S+ +VV +A+++ D  G+  + L   +      
Sbjct: 229 IHTSRGCPFLCVFCSNPSLHGREVRFMSVERVVADAKRMRDEFGMTVLMLEDDHFFH--- 285

Query: 238 KGLDGEKCTFSDLLYSLSEIKGLVRLRYTT-SHPRDMSDCLIKAHGDLDVLMPYLHLPVQ 296
                +K     LL  L+++   +R  +   +    + D + K   +    +  + L V+
Sbjct: 286 -----DKDRARRLLRELAKLG--IRCEFPNGAAVYAIDDEMAKLLAEAG--VSAVALAVE 336

Query: 297 SGSDRILK-SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
           SGSD +L   + +       +  ++ +R     +      + G PGE D+  + T++++ 
Sbjct: 337 SGSDHVLNNIIKKPLKKKLIKPAVEALRK--HGVRSHVFIVTGLPGEQDEHRQETLEMLL 394

Query: 356 KIGYAQAFSFKYSPRLG 372
           + G+     +   P  G
Sbjct: 395 ENGFDWIHIYLAIPIFG 411


>gi|222055013|ref|YP_002537375.1| radical SAM protein [Geobacter sp. FRC-32]
 gi|221564302|gb|ACM20274.1| Radical SAM domain protein [Geobacter sp. FRC-32]
          Length = 472

 Score = 78.4 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 48/313 (15%), Positives = 99/313 (31%), Gaps = 46/313 (14%)

Query: 92  NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG----- 146
           +S  ++  ++ V+  G  A + G  +L   P ++ ++  +      ELL     G     
Sbjct: 90  HSIKEQAPEIKVIFGGAHACSVGVSLLDTFPAIDYLIIGEGEVTFYELLAANFSGVEHIP 149

Query: 147 ----------------KRVVDTDYSVEDKFERLSIVDGGYNRK-----RGVTAFLTIQEG 185
                           + + D D      + RL    G YN             +    G
Sbjct: 150 GIGHRRDGKGVLSGIRQHIADLDSLPFPAYHRLDQFPGRYNLPLFSYPAAPNTSIISSRG 209

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARK-LIDNGVCEITLLGQNVNAWRGKGLDGEK 244
           C   C++C            S   + +  +    D G+  +                 ++
Sbjct: 210 CPYHCSYCDRSVFSRGFRFNSPGYIFEHLKYLHRDFGIRHVFF--------YDDLFTFDR 261

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTS-HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
               +L   L  +   + + Y        + + L+            ++  ++SG   +L
Sbjct: 262 SRVEELCRLL--VDNRLPVTYNCIARLEHVDEELVGLLKKSG--CWQVNFGIESGDPEVL 317

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRP--DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
           K    +H  Y     + +   +     + +   F+VG PGE +   R T+D    +   +
Sbjct: 318 K----KHRKYMALDAVHQKLKMVKTGGMRVKGLFMVGLPGEDEAAIRRTIDYALTLPLDE 373

Query: 362 AFSFKYSPRLGTP 374
               K++P  G P
Sbjct: 374 INVTKFTPFPGAP 386


>gi|294495090|ref|YP_003541583.1| radical SAM protein [Methanohalophilus mahii DSM 5219]
 gi|292666089|gb|ADE35938.1| Radical SAM domain protein [Methanohalophilus mahii DSM 5219]
          Length = 511

 Score = 78.4 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 71/444 (15%), Positives = 148/444 (33%), Gaps = 41/444 (9%)

Query: 64  LIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPI 123
           +++L+   +  K        L  I  L  +          +  G  ++            
Sbjct: 68  VVILSGMTVPGKYLRSSPITLKEIEYLCRATSGVKVIGGPIRLGYSSEGGMAASTLEMAD 127

Query: 124 VNVVVGPQTYYRL-PELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTI 182
            +V V  Q       +++      +   + ++ +    E     D G    R    F  I
Sbjct: 128 EDVFVARQDIEAFVHDIIGPGPCIEDPDNVEHRMRTVGEIGRWADRGAFIIRRHPDFPNI 187

Query: 183 Q------EGC--DKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQ-NVN 233
                   GC  D  C+FC   +  G    R +  VV EA  L   G     L  Q ++ 
Sbjct: 188 MCEMETYRGCGRDTHCSFC-TEFFYGPSTYRPVEDVVTEAGSLYREGALYFRLGRQPDLF 246

Query: 234 AWR----GKGLDG-EKCTFSDLLYSLSEI-KGLVRLRYTTSHPRDMSDCLIKAHGDLDVL 287
            +     G  L G        L   + ++  GL  L    ++P  ++    +    +  +
Sbjct: 247 TYHALDCGDSLPGPNPQALESLYSGIRKVAPGLEVLHMDNANPATIATYPDECSKIMKTI 306

Query: 288 MPY------LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV--------RPDIAISS 333
           + Y        + ++S    ++++ N +    +  + +  +  +           +    
Sbjct: 307 LKYHTPGDVAAMGMESADPAVIRANNLKAMPDDVFEAVKLMNEIGSIRGDNGLSHLLPGL 366

Query: 334 DFIVGFPGETDDDFRATMDLVD-----KIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           +F+ G  GET   F    D +       +   +    +  P  GTP +     + +N K 
Sbjct: 367 NFVHGLAGETKKTFGLNYDFLKNILDNDLLLRRINIRQVMPFSGTPAAEQALPLAKNRKI 426

Query: 389 ERLLCLQKKLREQQVSFNDACV--GQII-EVLIEKHGKEKGKLVGRSPWLQSVVL-NSKN 444
             L   ++  ++  +      V  G I+ +VL E  G+      GR      +++  S+ 
Sbjct: 427 F-LKYKEQVRKDIDLPMLRRVVPRGTILKDVLCEVWGEGSVGTFGRQMGSYPILIGISEK 485

Query: 445 HNIGDIIKVRITDVKISTLYGELV 468
             +G+ + VR+T     ++   +V
Sbjct: 486 LPLGEFVDVRVTGHGFRSISATVV 509


>gi|53715153|ref|YP_101145.1| coproporphyrinogen III oxidase [Bacteroides fragilis YCH46]
 gi|52218018|dbj|BAD50611.1| coproporphyrinogen III oxidase [Bacteroides fragilis YCH46]
          Length = 377

 Score = 78.4 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 46/234 (19%), Positives = 83/234 (35%), Gaps = 22/234 (9%)

Query: 186 CDKFCTFCVV-PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR---GKGLD 241
           C   C +C     TR     R +  +  E        +    L G+ +       G    
Sbjct: 11  CKTRCIYCDFYSTTRSEWKGRYIEALCKELE------MRYTYLKGKPIETLYFGGGTPSQ 64

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPR--DMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
            ++  F  +  ++  + G+      T      D+    ++   +L      + + +Q+  
Sbjct: 65  LDEKDFRKVFDTVRRVYGMENCHEITLEANPDDLCPEYLQMLSELP--FNRISMGIQTFD 122

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIA-ISSDFIVGFPGETDDDFRATMDLVDKIG 358
           D  LK + RRH A +  + ++  R+       IS D I G PGET + +   +     + 
Sbjct: 123 DTTLKLLKRRHNAAQAIRAVELCRA--HGFRNISIDLIYGLPGETTERWEKDLQQAIALD 180

Query: 359 YAQAFSFKYSPRLGTPGSNML-----EQVDENVKAERLLCLQKKLREQQVSFND 407
                ++      GTP   ML     E+VDE+        L  +LRE      +
Sbjct: 181 VEHISAYHLIYEEGTPIYKMLQKHQVEEVDEDSSVRFFTLLIDRLREAGYEHYE 234


>gi|158522576|ref|YP_001530446.1| radical SAM domain-containing protein [Desulfococcus oleovorans
           Hxd3]
 gi|158511402|gb|ABW68369.1| Radical SAM domain protein [Desulfococcus oleovorans Hxd3]
          Length = 426

 Score = 78.1 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 52/308 (16%), Positives = 101/308 (32%), Gaps = 37/308 (12%)

Query: 74  EKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTY 133
           ++  E     L  +R+L  +  K+     +V+ G       E  L        + GP   
Sbjct: 72  DQTMEPARFLLEPVRDLIAA-CKKQTSAPIVLGGAGYSIFPEAALSYLGADRGIRGPGE- 129

Query: 134 YRLPELLERARFGKRV----------------VDTDYSVEDKFERLSIVDGGYNRKRG-- 175
                LL      K                  +D D  + D    L         + G  
Sbjct: 130 KPFVSLLAHLENNKSPAAIPGLYLPGRKPAAPLDPDCHINDYPMPLPEDQVFAPSETGDA 189

Query: 176 -VTAFLTIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVCEITLLGQNVN 233
            V      + GC   C++C      G     R LS+V+D        G   +  +    N
Sbjct: 190 PVWVPFQTRRGCPMDCSYCSTASIEGRTTRKRDLSRVIDTLAAYRQAGFSHLFFVDNTFN 249

Query: 234 AWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS-HPRDMSDCLIKAHGDLDVLMPYLH 292
                           L   +  I+  + L +    +P  + + L +           + 
Sbjct: 250 IP--------PSYAKALCDGI--IEKNLNLSWRCIVYPWKIDNDLAEKMASAG--CKEVS 297

Query: 293 LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352
           L  +SGS ++L++ N++ T  + R +   ++    +I  +   ++G PGET+   + ++ 
Sbjct: 298 LGFESGSAQMLRAFNKKFTPDDVRAVSAALKQF--NIKQTGFLLLGGPGETEQTIQESLA 355

Query: 353 LVDKIGYA 360
            V+ +   
Sbjct: 356 FVESLNLD 363


>gi|94967908|ref|YP_589956.1| radical SAM family Fe-S protein [Candidatus Koribacter versatilis
           Ellin345]
 gi|94549958|gb|ABF39882.1| Fe-S protein, radical SAM family [Candidatus Koribacter versatilis
           Ellin345]
          Length = 488

 Score = 78.1 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 54/261 (20%), Positives = 92/261 (35%), Gaps = 35/261 (13%)

Query: 140 LERARFGKRVVDTDYSVEDKFERLSI---VDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
           + R    + +   D      F RL +   +   +  +R      +I  GC   C+FC V 
Sbjct: 150 MHRHNAERPMQGPDAFPWSPFHRLRVEQYLRPSFFGERTAAHHASI--GCPFRCSFCGVH 207

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256
              G            E  +  D  V  ++ L Q   A   +  D       D    L+E
Sbjct: 208 AAYGN----------RELMESPDRTVAILSHLKQTYGADSVQFYDMNFFMREDHARELAE 257

Query: 257 ------IKGLVRLRY-TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
                 +K     R  T S   D +  L++  G        +    +SGSD  LK M + 
Sbjct: 258 QMLPLGMKWWCEARIDTMSRYSDATLDLLRRAG-----CKMIFFGAESGSDWALKEMEKG 312

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG----YAQAFSF 365
            T  +   + +R++     I     F++G P + + D R T+  + KI      ++   +
Sbjct: 313 ITTEQTLTVAERMQQ--HGIIPEFSFVIGNPRDPERDTRETLAFIRKIKTLNPASEIIMY 370

Query: 366 KYSPRLGTPGSNMLEQVDENV 386
            Y+P        M  Q+D  +
Sbjct: 371 HYTPVPQRGA--MYGQIDGKI 389


>gi|282899649|ref|ZP_06307613.1| Magnesium-protoporphyrin IX monomethyl ester anaerobic
           oxidativecyclase [Cylindrospermopsis raciborskii CS-505]
 gi|281195528|gb|EFA70461.1| Magnesium-protoporphyrin IX monomethyl ester anaerobic
           oxidativecyclase [Cylindrospermopsis raciborskii CS-505]
          Length = 526

 Score = 78.1 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 42/302 (13%), Positives = 86/302 (28%), Gaps = 43/302 (14%)

Query: 99  GDLLVVVAGCVAQAEGEEILRRSPIVNVVV-----------------GPQTYYRLPEL-L 140
                ++ G        E+L  +P V+ ++                 G     R   L +
Sbjct: 88  PQAKTIMGGVHPTYMYNEVLNEAPWVDYIIRGEGEEITVNLVRAIAQGSDEKDRRHILGI 147

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTI-------QEGCDKFCTFC 193
                G+ V    +      + L+      +  + +   L +         GC   C FC
Sbjct: 148 AFLENGEVVATPAHPPISDLDTLTPDWDLLDWSKYIYTPLNVRVAVPNYARGCPFTCRFC 207

Query: 194 VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS 253
                     S S  + VD+   L+        +L               K  F DL + 
Sbjct: 208 SQWAFWRKYRSSSPKKFVDQIELLVKKYQVGFFILADEEPTI-------NKPKFLDLCHE 260

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMP----YLHLPVQSGSDRILKSMNRR 309
           L     + R              +++   DL +       ++ L  ++ +   L    + 
Sbjct: 261 L-----IARNLGVHWGINTRVTDILRDEADLPLYRQAGLVHVSLGTEAAAQLKLNLFRKE 315

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369
            T  + ++ I  ++     +   + FI+G   ET +    T  +             ++P
Sbjct: 316 TTIEQNKRAIQLLQQN--GMVAEAQFIMGLENETPETIEETYKMALDWKADMVNWNMFTP 373

Query: 370 RL 371
             
Sbjct: 374 WP 375


>gi|284929142|ref|YP_003421664.1| hopanoid biosynthesis associated radical SAM protein HpnJ
           [cyanobacterium UCYN-A]
 gi|284809601|gb|ADB95306.1| hopanoid biosynthesis associated radical SAM protein HpnJ
           [cyanobacterium UCYN-A]
          Length = 478

 Score = 78.1 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 53/314 (16%), Positives = 105/314 (33%), Gaps = 44/314 (14%)

Query: 92  NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE---------- 141
            +  K+     + + G  A     E L  +P+++ V   +  Y   EL E          
Sbjct: 90  EAIKKQNPSAEIGLLGAHAAVLPTETLEENPVLDFVCRSEFDYTCKELAEGKPYDTIKGL 149

Query: 142 --RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLT-----------IQEGCDK 188
             R +F       +  +   ++ +  V   Y +      +                GC  
Sbjct: 150 SYRDKFNNIKHTEERPLVQDWDSMPSVFPVYQKNLDFRKYFIGYLLHPYISLYTGRGCPA 209

Query: 189 FCTFCVVPYTRGIEISR--SLSQV---VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
            CTFC+ P T G    R  S + V   +  A+ +  N V E           + + +   
Sbjct: 210 KCTFCLWPQTIGGHDYRAKSPNIVGQEMALAKSIWGNSVQEYFFDDDTFTIDKKRVI--- 266

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
                    ++SE    + L ++ +   ++    +K   D    +  L + ++SG+ ++L
Sbjct: 267 ---------AISEHLKKLNLTWSCNARANLDYETLKTLRD--NGLRLLLVGLESGNQKVL 315

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
             + +       R+ +     +   I +   FI+G P ET +    T+    ++      
Sbjct: 316 DGIKKGIKLEVARKFMANCTKL--GIKVHGAFIIGLPNETKETIEETIRFACEVSPHTIQ 373

Query: 364 SFKYSPRLGTPGSN 377
               SP  GT    
Sbjct: 374 VSIASPYPGTELYK 387


>gi|18312118|ref|NP_558785.1| hypothetical protein PAE0707 [Pyrobaculum aerophilum str. IM2]
 gi|18159550|gb|AAL62967.1| conserved hypothetical protein [Pyrobaculum aerophilum str. IM2]
          Length = 565

 Score = 78.1 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 78/378 (20%), Positives = 137/378 (36%), Gaps = 57/378 (15%)

Query: 124 VNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLT 181
           V++VV    Y  + E +ERA   +     D+S+ DKF  L   IV    N    +   L 
Sbjct: 137 VDLVV----YRAIREGVERAMPSE--THRDFSLIDKFAVLGAKIVTQHPNYGGNLIVELE 190

Query: 182 IQEGCDKF----CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQ-NVNAWR 236
               C ++    C+FC      G  I+R +  VV+E + L   GV    L  Q +  A+ 
Sbjct: 191 TYRSCPRYVSGGCSFCTT-VAYGPVITRPIEGVVEEIKALYAAGVVHFRLGRQADFYAYM 249

Query: 237 GKGL---DGEKCTFSDLLYSLSEI----KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMP 289
              +   D  +   S +   L  I     GL  L     +P  ++    ++     +L+ 
Sbjct: 250 AHDIGREDFPRPNPSAIERLLLGIRNAAPGLKTLHIDNVNPGTVARWQEESVAITKLLVK 309

Query: 290 YLH------LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV--------RPDIAISSDF 335
           Y        + V+S   R++K  N +  A E  + ++              P I    +F
Sbjct: 310 YGTPGNVAAMGVESADPRVIKLNNLKVDAEEALRAVEIFTKYGSLRGYNGMPYILAGINF 369

Query: 336 IVGFPGETDDDFRATMDL----------VDKIGYAQAFSFKYS---PRLGTPGSNMLEQV 382
           + G PGET + +R  ++           V ++   Q   F  S   PR     + + E  
Sbjct: 370 VAGLPGETSETYRLNVEFLQQILDKGLLVRRVNIRQVLVFPTSRLWPRAKKLTAKLRE-- 427

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACV---GQIIEVLIEKHGKEKGKLVGRSPWLQSVV 439
               +  + L  +K +RE         +   G I+  +  +     G    +      +V
Sbjct: 428 ----RKAQFLQFKKWVREVFDREMLRRIVPRGTILREVYTEAYYHGGTYARQVGSYPLLV 483

Query: 440 LNSKNHNIGDIIKVRITD 457
                 ++G  + V + D
Sbjct: 484 YVPTRLHLGRYVDVVVVD 501


>gi|83312759|ref|YP_423023.1| Fe-S oxidoreductase [Magnetospirillum magneticum AMB-1]
 gi|82947600|dbj|BAE52464.1| Fe-S oxidoreductase [Magnetospirillum magneticum AMB-1]
          Length = 504

 Score = 78.1 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 61/338 (18%), Positives = 103/338 (30%), Gaps = 40/338 (11%)

Query: 54  ERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAE 113
           E +    DAD++ +    +             R R L      +G    VV  G  A   
Sbjct: 59  EPIPPTTDADIVGVCGMGV----------QFERQRELLAHYRDQGHY--VVAGGSYASLC 106

Query: 114 GEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRK 173
            +E    +   + VV  +  Y  PE       G        +         +      R 
Sbjct: 107 PDE---YTEAADTVVAGEAEYVWPEFCRDFEAGTPKPLYHETGTVALADTPVPRYDLLRL 163

Query: 174 RGVT-AFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN----GVCEITLL 228
              +   L    GC   C FC +    G    R   + +D+  K +D     G   +  +
Sbjct: 164 GAYSNVTLQFSRGCPFRCEFCDIIVMFGR---RPRVKDLDQIEKELDQLRRFGARSVFFV 220

Query: 229 GQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT----TSHPRDMSDCLIKAHGDL 284
             N+         G      DLL  L+E +      ++     S      D L++     
Sbjct: 221 DDNLI--------GNPKEAKDLLRFLAEYQRHHGYMFSFGTEASLNMAQDDELLELFRAA 272

Query: 285 DVLMPYLHLPVQSGSDRILKSMNRRHT-AYEYRQIIDRIRSVRPDIAISSDFIVGFPGET 343
           +    ++ + +++     LK   +      +    I RI S    I +   FI+GF  +T
Sbjct: 273 N--FGWVFIGIETTDPVGLKETGKTQNLREDTLTAIRRIYS--HGIDVLGGFIIGFDHDT 328

Query: 344 DDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
            D F      +   G   A          TP    +E+
Sbjct: 329 LDTFEHQYRFITDAGIQSAMIGLLMALPRTPLHARMER 366


>gi|48478008|ref|YP_023714.1| Fe-S oxidoreductase [Picrophilus torridus DSM 9790]
 gi|48430656|gb|AAT43521.1| Fe-S oxidoreductase [Picrophilus torridus DSM 9790]
          Length = 535

 Score = 78.1 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 49/298 (16%), Positives = 105/298 (35%), Gaps = 38/298 (12%)

Query: 93  SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDT 152
           SR+K      V++ G  A   G   L++   V+ V   +     P ++++A  G+ +  +
Sbjct: 134 SRLKSKYHFKVIIGGPAAWQIG---LKKPDWVDTVFNGEAELDFPLIVKKALNGEELPGS 190

Query: 153 DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC-VVPYTRGIEISRSLSQVV 211
                 K   +  +             + +  GC + C FC + P T     S     + 
Sbjct: 191 ITGRMPKVNEIPTIIKPARFGE-----VQVTRGCPRGCQFCSITPET---FRSIPYEDIE 242

Query: 212 DEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI------------KG 259
            E +  +  G  +I L+  ++  +  K L   +     L   +  +             G
Sbjct: 243 KEVKLNLSTGYRDIELVSDDILLYGQKKLQANEEALVKLFTMVKNLGARYITFPHISAPG 302

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR----RHTAYEY 315
           ++      +   +++  L +   +  V+       +++GS +I++             ++
Sbjct: 303 VLSAPKVVNEISEIAG-LKEYMAEAPVV------GLETGSVKIMRHYMNAKPFPWKPEDW 355

Query: 316 RQIIDRIRSVRPD--IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
           + +I     +  D  I       +G+P ETDDD   ++D+   I     F     P  
Sbjct: 356 KYVITNATPIMNDAAIFPCYTMTIGYPEETDDDLDQSIDIALSI-IDNKFKAWVFPLP 412


>gi|83312582|ref|YP_422846.1| Fe-S oxidoreductase [Magnetospirillum magneticum AMB-1]
 gi|82947423|dbj|BAE52287.1| Fe-S oxidoreductase [Magnetospirillum magneticum AMB-1]
          Length = 480

 Score = 78.1 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 53/312 (16%), Positives = 103/312 (33%), Gaps = 41/312 (13%)

Query: 92  NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE---------- 141
            +      ++++ + G       E  L  S  ++ V   +  Y + E+ E          
Sbjct: 90  EAFKAANPNIMIGMVGAHVATVPEPSLLASDAIDFVARHEFDYTIVEVAEGKPFAEIDGL 149

Query: 142 --RARFGKRVVDTDYSVEDKFERLSIVDGGYNRK-----------RGVTAFLTIQEGCDK 188
             R   GK V   D ++    + L  V   Y R            R          GC  
Sbjct: 150 TFRGEDGKPVHTKDRAMIHDMDALPFVGPVYRRDLNPDDYFIGYIRHPYMAFYTGRGCKS 209

Query: 189 FCTFCVVPYTRGI--EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR-GKGLDGEKC 245
            C+FC+ P T G     +RS   V++E            TL  Q     R     D    
Sbjct: 210 KCSFCLWPQTIGGRVYRARSAKSVIEEV-----------TLARQMFPEVREFFFDDDTFT 258

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
              + +  +++  G + + ++ +   ++    ++        +  L +  +SG   IL +
Sbjct: 259 DDLERVEEIAKGIGHLGVPWSCNAKANIPRKTLEVLKA--NGLRVLVVGYESGVQEILNN 316

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           + +       ++       +   I +   FI+G PGET +  + T+    ++        
Sbjct: 317 IRKGLRIDIIKRFSQDCHEL--GIVVHGTFILGLPGETRETIKQTLAFAKEVNPRTLQVS 374

Query: 366 KYSPRLGTPGSN 377
             +P  GT    
Sbjct: 375 MAAPYPGTELYE 386


>gi|60683089|ref|YP_213233.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Bacteroides fragilis NCTC 9343]
 gi|60494523|emb|CAH09320.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Bacteroides fragilis NCTC 9343]
          Length = 377

 Score = 78.1 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 46/234 (19%), Positives = 83/234 (35%), Gaps = 22/234 (9%)

Query: 186 CDKFCTFCVV-PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR---GKGLD 241
           C   C +C     TR     R +  +  E        +    L G+ +       G    
Sbjct: 11  CKTRCIYCDFYSTTRSEWKGRYIEALCKELE------MRYTYLKGKPIETLYFGGGTPSQ 64

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPR--DMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
            ++  F  +  ++  + G+      T      D+    ++   +L      + + +Q+  
Sbjct: 65  LDEKDFRKVFDTVRRVYGMENCHEITLEANPDDLCPEYLQMLSELP--FNRISMGIQTFD 122

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIA-ISSDFIVGFPGETDDDFRATMDLVDKIG 358
           D  LK + RRH A +  + ++  R+       IS D I G PGET + +   +     + 
Sbjct: 123 DTTLKLLKRRHNAAQAIRAVELCRA--HGFRNISIDLIYGLPGETTERWEKDLQQAIALD 180

Query: 359 YAQAFSFKYSPRLGTPGSNML-----EQVDENVKAERLLCLQKKLREQQVSFND 407
                ++      GTP   ML     E+VDE+        L  +LRE      +
Sbjct: 181 VEHISAYHLIYEEGTPIYKMLQKHQVEEVDEDSSVRFFTLLIDRLREAGYEHYE 234


>gi|156937501|ref|YP_001435297.1| radical SAM domain-containing protein [Ignicoccus hospitalis
           KIN4/I]
 gi|156566485|gb|ABU81890.1| Radical SAM domain protein [Ignicoccus hospitalis KIN4/I]
          Length = 508

 Score = 78.1 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 62/317 (19%), Positives = 120/317 (37%), Gaps = 39/317 (12%)

Query: 185 GCDKF----CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL 240
           GC +     C+FC+ P  +G  + R + ++V+E   L   GV    L  Q+     G   
Sbjct: 196 GCARSVGGGCSFCLAP-LKGRPVQRDVRKIVEEVEALYKFGVRSFRLGRQSDILVYGSPD 254

Query: 241 DGE-------KCTFSDLLYSLSEI-KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY-- 290
            G              L   +  +   L+ L     +P  +S    ++   L  ++ +  
Sbjct: 255 LGTEEWPRPSPLALRRLFQGIRSVAPSLITLHIDNVNPGTISRWPEESELALKEIVRWHT 314

Query: 291 ----LHLPVQSGSDRILKSMNRRH---TAYEYRQIIDRIRSVR-----PDIAISSDFIVG 338
                 + ++S   R++K  N +     A    +I++++   R     P +    +FI G
Sbjct: 315 PGDVAAMGIESVDPRVVKINNLKVLLDDALVAIRIVNKVGRNRGWNGLPHLLPGINFIAG 374

Query: 339 FPGETDDDFR---ATMDLVDKIGYA--QAFSFKYSPRLGTPGSNMLEQVDENVKAERLLC 393
            PGE+ + +    A +D +++ G    +    K S   GT   ++ ++V   V ++    
Sbjct: 375 LPGESKETWEYNKALLDRIEEEGLLVRRVNLRKLSLLPGTQAYSLTKKV---VVSKGYEG 431

Query: 394 LQKKLREQQVSFNDACV--GQIIEVLIEKHGKEKGKLVGRSP-WLQSVVLNSKNHNIGDI 450
            +K + + Q       V  G ++  L+ +   EKG    R P      V   K   +G  
Sbjct: 432 FRKYVMKWQERMLKKVVPPGTVLRNLVVEKV-EKGVSYARQPASYPLTVEIVKPLPVGSW 490

Query: 451 IKVRITDVKISTLYGEL 467
           I   +      ++  EL
Sbjct: 491 ITAVVKRAHSRSVLAEL 507


>gi|78222902|ref|YP_384649.1| radical SAM family protein [Geobacter metallireducens GS-15]
 gi|78194157|gb|ABB31924.1| Radical SAM [Geobacter metallireducens GS-15]
          Length = 467

 Score = 78.1 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 58/350 (16%), Positives = 107/350 (30%), Gaps = 56/350 (16%)

Query: 44  MEDMFFSQGYER-------VNSMDDA----------DLIVLNTCHIREKAAEKVYSFLGR 86
           +     + G+             ++A          D++VL    +R             
Sbjct: 25  LAGPLRAAGHRLSVLDLCFAADPEEATRQALAEFSPDVVVL---SLRNIDNVTYPGSRSY 81

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           +  +++          VVV G        E+L        VVG +    LP LL R   G
Sbjct: 82  LSGVRDVVAICRERAAVVVGGSGFSLMPREVLAYLGADYGVVG-EGEDVLPRLLARIAAG 140

Query: 147 K---------RVVDTDYSVEDKFERLSIVDGG-----YNRKRGVTAFLTIQEGCDKFCTF 192
           +            +  +      + +     G        + G  A +  + GC   C +
Sbjct: 141 EGGDGLPGVVARENAGFLPPHPVQAIGTPLRGLFQVERYHREGGMANIQTKRGCPFSCIY 200

Query: 193 CVVPYTRG-IEISRSLSQVVDEARKLID-NGVCEITLLGQNVNAWRGKGLDGEKCTFSDL 250
           C  P   G     R ++ ++ E   L+D +GV  +  +    N               + 
Sbjct: 201 CTYPLLEGERMRLRPVADIIAEIGDLVDVHGVSYLYFVDDIFNYP------------LEF 248

Query: 251 LYSLSEIKGLVRLRYTT---SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307
              L       RL        +P  +   L+ A   L      L     SGS  +L+++ 
Sbjct: 249 ALELCRAMSAARLPVAWSAFINPDFLPPQLLDAM--LAAGCDALEFGTDSGSPVMLRNLR 306

Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
           +     + R+     R     +  +   + G PGET      +  L+D++
Sbjct: 307 KSFGIEKVREASRLCREA--GVDFAHYILFGGPGETPATIAESFALMDEV 354


>gi|145219184|ref|YP_001129893.1| radical SAM domain-containing protein [Prosthecochloris
           vibrioformis DSM 265]
 gi|145205348|gb|ABP36391.1| Radical SAM domain protein [Chlorobium phaeovibrioides DSM 265]
          Length = 475

 Score = 78.1 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 57/315 (18%), Positives = 102/315 (32%), Gaps = 44/315 (13%)

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             +   R    +         V++ G       EE    +P  + +V  +       LLE
Sbjct: 82  RTIDASRAYDIADRFRQHGQKVILGGLHVSFNPEE---AAPHADTIVSGEAENLWGTLLE 138

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNR-----KRGV-----TAFLTIQEGCDKFCT 191
            A+  +  +   Y  +D      I    Y R     KRG      +  + I  GC   C+
Sbjct: 139 DAQLNR--LKPSYDAKDFPPVTEIAPLDYRRIAAASKRGKVDGTKSIPIYITRGCPFTCS 196

Query: 192 FCVVPYTRGIE-ISRSLSQVVDEARK-----LIDNGVCE---ITLLGQNVNAWRGKGLDG 242
           FCV P   G    ++    +  +  +      + NG        L  +N+          
Sbjct: 197 FCVTPNFTGKLYRTQKPEDLKRQIEEAKEMFFLQNGKKSKPWFMLCDENLGIS------- 249

Query: 243 EKCTFSDLLYSLSE--IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300
            K    D L  L E  I   V          +    L+ A            +  +S   
Sbjct: 250 -KKRLWDALDLLKECNINFSVFFSMNFLEDDETVKKLVDA------GCLMALVGFESIKQ 302

Query: 301 RILKSMNRRH--TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
             L++ N+ H  +A +  ++I+R R     + I  +F++    +T +D    ++ + K  
Sbjct: 303 STLEAYNKGHVNSAGKIAEVIERCRRA--GLNIQGNFLINPDLDTYEDMDDLVEFIGKNN 360

Query: 359 YAQAFSFKYSPRLGT 373
                    +P  GT
Sbjct: 361 VFMPIMQIITPYPGT 375


>gi|307265878|ref|ZP_07547428.1| Radical SAM domain protein [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306919153|gb|EFN49377.1| Radical SAM domain protein [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 562

 Score = 78.1 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 53/304 (17%), Positives = 103/304 (33%), Gaps = 26/304 (8%)

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLP--ELLE 141
           +    NL  +  K    +++V+ G  A  + + +L +  +  +V+G          E LE
Sbjct: 66  IEIALNLAENIKKILPKVILVLGGPEASYDVDNLLSKGFVDYIVLGEGEIAFKELLEALE 125

Query: 142 RARFGKRVVDTDYSVED-----------KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190
             R  K V    Y V+                + I             +     GC   C
Sbjct: 126 GKRDIKEVAGISYKVDGQIVIQPQKDYVNLNEVPISYEEEEDLSNKLVYYETSRGCPFKC 185

Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDL 250
            +C+           SL +V  + +  +D  V  + L+ ++ N+         +    ++
Sbjct: 186 AYCL-SSIDNKLRYESLEKVERDLKWFVDKNVKILKLIDRSFNS--------NRKRAREI 236

Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
           L  + +I G         +P  + +  I+    L+       + VQ+ +   LK ++R  
Sbjct: 237 LNIMKKIGGDTVFHCEV-NPELVDEEFIEELKGLEK-RIQFEVGVQTTNKNSLKKISRIT 294

Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370
              +  + I  +R     I +  D I G P ++   F    D V  +   +         
Sbjct: 295 AVEKALRGIKLLREA--GIKLHVDLIAGLPEDSFGTFSKAFDDVYNLKPDEIQLGFLKVL 352

Query: 371 LGTP 374
            GTP
Sbjct: 353 KGTP 356


>gi|110667147|ref|YP_656958.1| Fe-S oxidoreductase [Haloquadratum walsbyi DSM 16790]
 gi|109624894|emb|CAJ51303.1| predicted Fe-S oxidoreductase [Haloquadratum walsbyi DSM 16790]
          Length = 578

 Score = 78.1 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 62/389 (15%), Positives = 116/389 (29%), Gaps = 46/389 (11%)

Query: 111 QAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG--KRVVDTDYSVEDKFERLSIVDG 168
            A  +E+ R++   + +          +L+E    G   R   TD       +   IV  
Sbjct: 123 NAGAQEMERQNLDYDYLAMADVEAAAYDLVESGLEGFNDRYRSTDELDRWASKGAFIVVQ 182

Query: 169 GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLL 228
             N    +   +    GC   C+FC  P   G    R+   V+ E   L D GV    + 
Sbjct: 183 HPNYPEYLICEIETSRGCAYRCSFCTEP-MYGDPSFRTADSVIREVESLADRGVAHFRIG 241

Query: 229 GQ-NVNAWRGKGLDGEKCTFSDLLYSLSEIKG-------LVRLRYTTSHPRDMSDCLIKA 280
            Q ++ A+ G G          L   + ++               T  +  D S   +  
Sbjct: 242 RQADILAFGGDGEAPNPDALRRLYSGIRDVAPDLQTLHLDNMNPITIVNWPDASRECLDI 301

Query: 281 HGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA-YEYR--QIIDRIRSVRPD--------- 328
               +         ++S    +        TA   +   +I++ +   RP          
Sbjct: 302 ISTYNTPGDTAAFGLESADPVVQDQNQLNVTADECFEAVRIVNEVAGWRPGEDPADAPSY 361

Query: 329 ----------IAISSDFIVGFPGETDDDFRATMDLVDKIGYA------QAFSFKYSPRLG 372
                     +    + + G  GE  + F      + ++ +       +    +     G
Sbjct: 362 GIEAPDRLPKLLPGINLLHGLTGERTETFAHNKRFLHRV-FDAGLLLRRINIRQVMAFEG 420

Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACV--GQII-EVLIEKHGKEKGKLV 429
           T  +     V    K +     Q+   E         V  G ++ +V +E      G+  
Sbjct: 421 TEMAETGADVAIEHKKQFKQYKQEVREEIDQPMLRRLVPAGTVLPDVYLE--YHRDGRTF 478

Query: 430 GR-SPWLQSVVLNSKNHNIGDIIKVRITD 457
           GR       +V       +G +I V + D
Sbjct: 479 GRQLGTYPLLVGIPGERPLGKMIDVAVVD 507


>gi|283785772|ref|YP_003365637.1| hypothetical protein ROD_20851 [Citrobacter rodentium ICC168]
 gi|282949226|emb|CBG88836.1| conserved hypothetical protein [Citrobacter rodentium ICC168]
          Length = 447

 Score = 78.1 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 57/335 (17%), Positives = 109/335 (32%), Gaps = 36/335 (10%)

Query: 54  ERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAE 113
           ER+   +  DL+ +    +    A + Y      R            + VV+ G  A   
Sbjct: 50  ERIPYDEQTDLVAI---TVETFTARRAYEIADEYRQ---------RGVKVVMGGIHATLL 97

Query: 114 GEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSV----EDKFERLSIVDGG 169
            EE+       + V       R  E++E AR  +     D  V     D  +R  +    
Sbjct: 98  PEEVAL---HADSVFTGDAETRWQEMIEDARAARLKPRYDAPVGVGQVDGCQRCLLPRRE 154

Query: 170 YNRKRGVTAF--LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITL 227
               +G      +    GC   C FC V    G      L QV +  R++       I  
Sbjct: 155 IFSGKGYLPINLMQFSRGCRFACRFCAVSQYFGR-RHY-LRQVDEVVREITAQKSHFIFF 212

Query: 228 LGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL 287
           +  N+ +        +    ++L ++L     L     + +      +  +    +    
Sbjct: 213 VDDNIAS--------DHHALAELCHALI---PLKINWISQASLDVTQNRPLMTLMERSGC 261

Query: 288 MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP-DIAISSDFIVGFPGETDDD 346
              + +  +S +   L    +      +    D I ++R   +   + F +G+  +T + 
Sbjct: 262 WGNV-MGFESITPASLHDARKSPNVRGFNHYRDEIAALRDFGLQTWAAFTLGYDHDTPES 320

Query: 347 FRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
              T+D   +  +A A      P   TP  + L+Q
Sbjct: 321 IARTVDFALQNRFAFAAYNILMPYPNTPLYHQLQQ 355


>gi|145592545|ref|YP_001154547.1| radical SAM domain-containing protein [Pyrobaculum arsenaticum DSM
           13514]
 gi|145284313|gb|ABP51895.1| Radical SAM domain protein [Pyrobaculum arsenaticum DSM 13514]
          Length = 565

 Score = 78.1 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 69/376 (18%), Positives = 127/376 (33%), Gaps = 47/376 (12%)

Query: 124 VNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQ 183
           V++VV    Y  L E LE+A   +   D     E       IV    N  + +   L   
Sbjct: 137 VDLVV----YRALTEGLEKAVPSETHKDFYLVDEFAVRGAKIVLQHPNYGKNLIVELETY 192

Query: 184 EGCDKF----CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQ-NVNAWRGK 238
             C ++    C+FC      G  I+RS+  +V E   L   GV    L  Q +   +   
Sbjct: 193 RSCPRYVTGGCSFCTT-VAYGPVITRSIEGIVKEVEALYKAGVMHFRLGRQADFYTYMAH 251

Query: 239 GL---DGEKCTFSDLLYSLSEI----KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL 291
            +   D  +   + +   L  I     GL  L     +P  ++    ++     +L+ Y 
Sbjct: 252 DVGREDFPRPNPTAIERLLVGIRNAAPGLRTLHIDNVNPGTVARWREESIQITKLLVEYG 311

Query: 292 H------LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV--------RPDIAISSDFIV 337
                  + ++S   R++K  N +    E  + +               P +    +F+ 
Sbjct: 312 TPGNVAAMGIESADPRVVKINNLKVDTEEALEAVALFTKYGSARGPNGMPYLLAGINFVA 371

Query: 338 GFPGETDDDFRATMDLVDK----------IGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
           G PGET++ +R  ++ + +          +   Q   F  S         +  ++ E+  
Sbjct: 372 GLPGETEETYRHNVEFLKEVLARGLLVRRVNIRQLLIFPTSRLWP-KARKLTSRLREH-- 428

Query: 388 AERLLCLQKKLREQQ-VSFNDACV--GQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444
             R L  +K +RE          V  G ++  +  +     G    +      +V     
Sbjct: 429 KRRFLLFKKWVREVFDREMLRRLVPQGTVLREVFTEVHYHNGTYARQVGSYPLLVYIPTR 488

Query: 445 HNIGDIIKVRITDVKI 460
             +G  I V + D   
Sbjct: 489 LELGRYIDVVVVDHGS 504


>gi|51246596|ref|YP_066480.1| Mg-protoporphyrin IX monomethyl ester oxidative cyclase
           [Desulfotalea psychrophila LSv54]
 gi|50877633|emb|CAG37473.1| related to Mg-protoporphyrin IX monomethyl ester oxidative cyclase
           [Desulfotalea psychrophila LSv54]
          Length = 572

 Score = 78.1 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 52/280 (18%), Positives = 100/280 (35%), Gaps = 19/280 (6%)

Query: 99  GDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL----LERARFGKRVVDTDY 154
               +VV G  AQ   +++     +V   +          L    LE+   G   V  + 
Sbjct: 100 PRCQLVVGGPQAQIIADKVGENCTVVVGEIEGIDPAFYQALQGGSLEKRYRGHFQVVREE 159

Query: 155 SVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEA 214
            +   + +    +   NR+     +     GC   C++C+     G+   + LSQV +E 
Sbjct: 160 GLASIYRQEDFAEYLQNRQ----IYYETSRGCPFACSYCLSAAEVGVY-HKPLSQVQEEL 214

Query: 215 RKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMS 274
             ++ +    +  + +  N    +GL   K        +L   +           P   +
Sbjct: 215 DLILAHAPKTLRFIDRTYNDNWRRGLAIWKMLMEYDCQTLFHFE---------IAPDFFT 265

Query: 275 DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSD 334
           + +      +        + +QS +D  L ++ RR    + RQI+ R+ S   +I +  D
Sbjct: 266 EEIFDFLKTVPAGRFQFEIGIQSTNDPTLDAICRRMKTEKVRQIVSRLASYS-NIHLHVD 324

Query: 335 FIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
            I+G P ET + F  + + V  +G              TP
Sbjct: 325 LILGLPYETRETFLRSFEDVFAMGAHYIQMGLLKMLPDTP 364


>gi|297171508|gb|ADI22507.1| Fe-S oxidoreductase [uncultured verrucomicrobium HF0500_08N17]
          Length = 492

 Score = 78.1 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 42/226 (18%), Positives = 81/226 (35%), Gaps = 19/226 (8%)

Query: 159 KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLI 218
            F +  I    Y         +    GC   C+FC +P       +RS+  VV+E + + 
Sbjct: 193 HFGKKGINKHFYASITWPYVHILTARGCPYSCSFCNIPSIAS-YRTRSIENVVNEFKYIQ 251

Query: 219 DN-GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCL 277
           +         +  +            K    +L   L  I   V++R++ +   D +  +
Sbjct: 252 EELPYVNEIFIEDDT-------FPVNKNRTLELCERL--IDEKVKIRWSCNARVDTNPDV 302

Query: 278 IKAHGD--LDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDF 335
           +         +L      P +S  D ++K  N+     E+    ++      D+ ++  F
Sbjct: 303 LGTMRKAGARLLCVGFESPNKSALDGVIKKTNKN-KQEEFMNSCNK-----HDLKVNGCF 356

Query: 336 IVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I+G PG+ D     T+D   K+    A  + +    GT      E+
Sbjct: 357 IIGLPGDNDIKIDQTIDFAKKLMPNTAQFYPHMLYPGTGSFKWAEE 402


>gi|322434211|ref|YP_004216423.1| Radical SAM domain protein [Acidobacterium sp. MP5ACTX9]
 gi|321161938|gb|ADW67643.1| Radical SAM domain protein [Acidobacterium sp. MP5ACTX9]
          Length = 489

 Score = 78.1 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 47/253 (18%), Positives = 83/253 (32%), Gaps = 24/253 (9%)

Query: 142 RARFGKRVV-DTDYSVEDKFERLSI---VDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197
           R   G+R +   D      F RL +   +   +  KR      +I  GC   C+FC V  
Sbjct: 150 RHDNGERAMKGPDEFPWSPFHRLPVEKYLRPSFFGKRTAVHHASI--GCPFNCSFCGVHA 207

Query: 198 TRG-IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256
             G  E   S  + V     L+D         G +   +        +    +L   ++ 
Sbjct: 208 AYGNKEKFESPERTVAILTHLVDR-------YGADSVQFYDMNFFLREDKARELCDRMAH 260

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           +                SD    A          +    +SGSD +L+ M +  T  +  
Sbjct: 261 LNLRWWCEARVDIMSRYSDETWAAIKRAG--CAMIFFGAESGSDWVLEEMQKGITTEQTL 318

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG---YAQ---AFSFKYSPR 370
           +I    R+    I     F++G P + D D + ++  + KI             +  +P+
Sbjct: 319 EIAR--RTYEFGIIPEFSFVIGNPNDPDRDTQESLRFIRKIKRINPDSEIIIQHYTPTPQ 376

Query: 371 LGTPGSNMLEQVD 383
               G  M   ++
Sbjct: 377 PHKAGGEMYGDIE 389


>gi|328953934|ref|YP_004371268.1| Protein of unknown function DUF2344 [Desulfobacca acetoxidans DSM
           11109]
 gi|328454258|gb|AEB10087.1| Protein of unknown function DUF2344 [Desulfobacca acetoxidans DSM
           11109]
          Length = 838

 Score = 77.7 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 40/236 (16%), Positives = 90/236 (38%), Gaps = 22/236 (9%)

Query: 182 IQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLI-DNGVCEITLLGQNVNAWRGKGL 240
           I  GC + C FC           R    +++   + +  +G  E++LL  +   +     
Sbjct: 265 IFRGCTRGCRFCQAGIIYRPVRERRPESILNWVEEALSASGFEEVSLLSLSSGDYSCLT- 323

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300
                  + L+  L  ++  + +   +     ++  L++    +        +  ++GSD
Sbjct: 324 ----PLLTGLMDRL--VESRIAVSLPSLRADTLNSDLMQQIKRVRK--TGFTIAPEAGSD 375

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI--- 357
           R+ +++N+  +  E    +++   +   + +   F++GFP E  +D +A  DL  +    
Sbjct: 376 RLRRAINKNLSEAEIMATVEQAFELGWHL-LKMYFMIGFPMEEREDLQAIADLCRRALAA 434

Query: 358 -------GYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFN 406
                  G        + P+  TP      Q+      ERL  L+  LR++ +   
Sbjct: 435 AKKINRRGKMHVSINTFIPKPHTP-FQWERQLSRPESQERLHLLKDSLRQRDLEIR 489


>gi|322435966|ref|YP_004218178.1| Radical SAM domain protein [Acidobacterium sp. MP5ACTX9]
 gi|321163693|gb|ADW69398.1| Radical SAM domain protein [Acidobacterium sp. MP5ACTX9]
          Length = 532

 Score = 77.7 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 54/307 (17%), Positives = 97/307 (31%), Gaps = 23/307 (7%)

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             +R     R+       V+  G  A    EE   R    + VV           +  + 
Sbjct: 66  NALRGYAVGRMARERGATVIYGGIHATLFPEECFER-GQAHSVVKGDGDVAWGMAVNDSL 124

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG-IEI 203
            G      D    +  + L+         + + A +    GC K C+FC V  T G    
Sbjct: 125 NGTLQHIYDGGRIEGNQFLAARWDLMRTDKYMWASVQTIRGCPKHCSFCSVWRTDGQKPR 184

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNV-----NAWRGKGLDGEKCTFSDL-------- 250
            R    V+DE   L   G   I L   N         R     G +    +L        
Sbjct: 185 QRQFQSVIDEIVNLRRIGFRFIALADDNFYPVTLTDLRLAREQGNQAKLDELIAIRSERF 244

Query: 251 --LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
             +  LS++   +      +         + A    ++      + V++ +   LK++ +
Sbjct: 245 QLMEELSKLPKDMVFFTQITMEAGEDGDYLDAMRRANI--KGALVGVEAVTPEGLKAVFK 302

Query: 309 --RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
              ++     + +   +     + +   FI G P +    F AT+++  K G   A    
Sbjct: 303 DFNYSGEALAKQLQTFKK--HGVHVLGSFIFGLPTDKPATFDATVEMALKAGVTFAQFVM 360

Query: 367 YSPRLGT 373
            +P  GT
Sbjct: 361 MTPFPGT 367


>gi|261416594|ref|YP_003250277.1| Radical SAM domain protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261373050|gb|ACX75795.1| Radical SAM domain protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|302325552|gb|ADL24753.1| radical SAM domain protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 501

 Score = 77.7 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 35/198 (17%), Positives = 75/198 (37%), Gaps = 17/198 (8%)

Query: 184 EGCDKFCTFCVVPYTRG--IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD 241
            GC   C++CV+P T        R    VVDE + + +N         +++     +  D
Sbjct: 215 RGCPNHCSYCVIPQTLNGHKFRRRDPKDVVDELQYIKENF--------EDLGEVFFED-D 265

Query: 242 GEKCTFSDLLYSLSEI-KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300
               +   +    + I +  +++ ++ +   D+   L+K           + +  +S S 
Sbjct: 266 TFTASHEHVRQICNLILERGLKITWSCNARADVPLDLLKLMKKAGG--REMCVGFESASP 323

Query: 301 RILKSMNRR-HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
            +L+ +++      +  +     R     + +   F+VG PG+T +  R T+D   K+  
Sbjct: 324 EVLEKIHKGVKNTDKAIEFTKNARKA--GLLVHGCFMVGNPGDTPETLRMTLDYAKKLNP 381

Query: 360 AQAFSFKYSPRLGTPGSN 377
             A  +      GT    
Sbjct: 382 NTAQFYPIMAYPGTEAYK 399


>gi|145592507|ref|YP_001154509.1| radical SAM domain-containing protein [Pyrobaculum arsenaticum DSM
           13514]
 gi|145284275|gb|ABP51857.1| Radical SAM domain protein [Pyrobaculum arsenaticum DSM 13514]
          Length = 532

 Score = 77.7 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 51/292 (17%), Positives = 105/292 (35%), Gaps = 29/292 (9%)

Query: 95  IKEGGDLLVVVAGCVAQAE--GEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDT 152
            K G  L V+V G  A       E++ +  I  +  G      + +L+ RA  GK +   
Sbjct: 147 AKAGNGLRVIVGGPAAWQWLYFPELVDKWGIDTIFDGEGERL-VVDLVRRAVEGKPL--P 203

Query: 153 DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVD 212
            Y      E  S+ +    +   +   + I  GC + C FC V           L ++ +
Sbjct: 204 KYIYVGVGEAPSLEEISTIKYPSINGLVEIGRGCPRGCAFCSVTL--RAMRWYPLEKIEE 261

Query: 213 EARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
           E +     GV +  L    V  +    ++           +L ++      +   SH   
Sbjct: 262 ELKVNARAGVVDGILHSDEVPLYGSTTVEPNPEKLV----ALHKLAKRYYRKVGWSHTTF 317

Query: 273 MS------------DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN----RRHTAYEYR 316
           ++              L +   D         + +++GS R+ + +       +   ++ 
Sbjct: 318 VAVYHGEKKMGKLFTKLSEIILDEHQDWWGAQIGLETGSVRLARKIMPGKAAPYKIDQWH 377

Query: 317 QIIDRIRSVRPDIA--ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
           +I++   ++  +I    +   IVG P E  DD   T++LV+++   ++    
Sbjct: 378 EIVEEAAAIMHEIRLIPAITLIVGLPDEQPDDVVETIELVERLRPYRSLIVP 429


>gi|258516338|ref|YP_003192560.1| Radical SAM domain-containing protein [Desulfotomaculum acetoxidans
           DSM 771]
 gi|257780043|gb|ACV63937.1| Radical SAM domain protein [Desulfotomaculum acetoxidans DSM 771]
          Length = 552

 Score = 77.7 bits (190), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 35/298 (11%), Positives = 86/298 (28%), Gaps = 32/298 (10%)

Query: 95  IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDY 154
            +   +++V V G       EE L     +++VV  +    L +L+      +   + + 
Sbjct: 91  KEFSNNIIVTVGGTYVSYMPEEALNTCHDIDIVVMGEGEVPLLKLVSNVLLNQEYENIEG 150

Query: 155 SVEDK-------------------FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
               K                      + ++       R     L +  GC   C +C  
Sbjct: 151 LAYRKNNDVIKIGGPIPVDLSTVPLPAIDLIPTPLYVARRERYILELSRGCTNACPYCTS 210

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
            + +     R   Q++ E  +    G  +   +           L+ +          ++
Sbjct: 211 SFIKKHVRYRDCVQIISEIEQAYKAGFRKFYFVDD-------VFLNNKPLVIEVCREIVN 263

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
               +     +     D                  +   +++ S   L+ + +   + + 
Sbjct: 264 NKFDITWPCMSRIDHIDEETLYWMKLAG----CEIIAFGIETVSQNTLEQIGKSDLSDKI 319

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
           +     ++     I   +  + G P  T  D   T++ + ++       F + P  GT
Sbjct: 320 QNTFATVKK--HGIRALAFVMFGMPLSTLRDELLTINFLSRLQPDAIGVFSFKPYPGT 375


>gi|332983460|ref|YP_004464901.1| Radical SAM domain-containing protein [Mahella australiensis 50-1
           BON]
 gi|332701138|gb|AEE98079.1| Radical SAM domain protein [Mahella australiensis 50-1 BON]
          Length = 586

 Score = 77.7 bits (190), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 53/316 (16%), Positives = 114/316 (36%), Gaps = 27/316 (8%)

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVV---GPQTYYRLPELL 140
           +  I  L ++  K    + +++ G     +   +L++   ++ VV   G + + +L  LL
Sbjct: 67  IDMIWRLCSALKKVLPHVTIILGGPEVSYDAFMLLKQHECIDYVVCGEGEEAFAKLLTLL 126

Query: 141 ERARFGKRVVDTDY---------------SVEDKFERLSIVDGGYNRKRGVTAFLTIQEG 185
           +  R     ++  Y               S       ++      +    +  + T   G
Sbjct: 127 KDGRRSAGGIEGVYYRSGDIICGSGFAVVSDMSDISTMAYAVEHVDASNRIVYYET-SRG 185

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C   C++C+   T G      + +V D+   ++ +G  ++  L +  NA R + +D    
Sbjct: 186 CPFRCSYCLSSTTDG-IRYVPMGRVKDDLAHIMRSGAKQVKFLDRTFNAHRRRAMD---- 240

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
                +    +    +R  +       + D +++    +   +    + +QS ++  LK+
Sbjct: 241 -IWRFITDYDKRPEGMRFHFEICADI-IDDDMLEFLLSVPDDLFQFEIGIQSVNESSLKT 298

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           +  RHT       +  I + R +I +  D I G P E    F  + D    +        
Sbjct: 299 V-GRHTDLHRMAHVVAILARRGNIHLHLDLIAGLPNEDFSSFGRSFDYAYGLRPDVLQLG 357

Query: 366 KYSPRLGTPGSNMLEQ 381
                 G+   NM EQ
Sbjct: 358 FLKLLKGSELRNMAEQ 373


>gi|309791023|ref|ZP_07685560.1| Elongator protein 3/MiaB/NifB [Oscillochloris trichoides DG6]
 gi|308226938|gb|EFO80629.1| Elongator protein 3/MiaB/NifB [Oscillochloris trichoides DG6]
          Length = 461

 Score = 77.7 bits (190), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 43/249 (17%), Positives = 84/249 (33%), Gaps = 26/249 (10%)

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
               G + ++     + +F R S     Y+ +  + A     +GC   C FC  P   G 
Sbjct: 159 EPNAGWKPLNEMPRTDFRFARSSKHARNYSERLPLLA----TKGCPVGCNFCCTPRIYGK 214

Query: 202 -EISRSLSQVVDEARKLID-NGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
               R   Q++DE +   +  G  ++     + N         +    ++L  ++ ++  
Sbjct: 215 TFRIRESDQMIDEIKAHQNFAGKRDVRFSFMDDNICF------KPAYANELFNAMVDLGV 268

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA-YEYRQI 318
                 + +         + A           ++  +S     +K +++       Y  +
Sbjct: 269 HWNANISMNFLEKREFVELAAAAG----CEMFNVGFESVDPETIKYVHKGSNRVSHYEDV 324

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           +  +      IAI   FI GF  +T+  F+ T D + K           +P  GTP    
Sbjct: 325 VANVHKQ--GIAIQGYFIFGFDTDTNRSFQHTFDFIMKNRIEFPVFTIATPFPGTPWF-- 380

Query: 379 LEQVDENVK 387
                E VK
Sbjct: 381 -----EEVK 384


>gi|239996130|ref|ZP_04716654.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Alteromonas macleodii
           ATCC 27126]
          Length = 93

 Score = 77.7 bits (190), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 1/56 (1%)

Query: 414 IEVLIEKHGKEK-GKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
             +L+E   K+   +L GR+   + V        IG+ + V ITDV  ++L GE+V
Sbjct: 1   QRILVEGPSKKNPMELSGRTENNRVVNFEGTPDMIGEFVDVNITDVFTNSLRGEVV 56


>gi|13541412|ref|NP_111100.1| Fe-S oxidoreductase [Thermoplasma volcanium GSS1]
 gi|14324795|dbj|BAB59722.1| Mg-protoporphyrin IX monomethyl ester oxidative cyclase
           [Thermoplasma volcanium GSS1]
          Length = 529

 Score = 77.7 bits (190), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 43/237 (18%), Positives = 82/237 (34%), Gaps = 14/237 (5%)

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYN-RKRGVTAFLTIQEGCDKFCTFC-VVPYTR 199
           R +  + + D D      F+ +      +     G  A L    GC   C FC V P   
Sbjct: 159 RTKKRELIDDLDSLPIPAFDLVEPEKYTFKVFGEGSVATLETSRGCPYACDFCSVTPTWG 218

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
               ++S  ++++E R +   G   +         +        K         + E  G
Sbjct: 219 NKWRNKSNERIMEELRIIKQLGYKWVFFTDDIFIVY-----PNVKQREDLFNRIIEEDLG 273

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           L  +    +     +  LIK        +    L ++SGS+ +LK+M++        + +
Sbjct: 274 LKFIVQMRADVTAKNPDLIKKAAQAG--LTIAFLGIESGSEEVLKAMHKGIITDSSIRAV 331

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL---VDKIGYAQAFSFKYSPRLGT 373
             +     ++ +    ++G P E   D R T+     + + G        Y+P  GT
Sbjct: 332 KVLEEN--NVVVLGGMMLGAPYERISDIRKTIKFSRILARAGIDAIQFSTYTPLPGT 386


>gi|310827282|ref|YP_003959639.1| radical SAM domain-containing protein [Eubacterium limosum KIST612]
 gi|308739016|gb|ADO36676.1| radical SAM domain-containing protein [Eubacterium limosum KIST612]
          Length = 578

 Score = 77.7 bits (190), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 51/317 (16%), Positives = 103/317 (32%), Gaps = 33/317 (10%)

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR-- 144
           I  +     K   + +V   G     +   +L   P V+ ++  +     PE +E  +  
Sbjct: 70  IAKISEVLKKSRPNCIVFWGGPEVSYDSGRLLEEHPFVDYIISGEGETVFPEFVETLQSR 129

Query: 145 -------------FGKRVVDTDYSVED--KFERLSIVDGGYNRKRGVTAFLTI-----QE 184
                        FG+ V  +  + E     E L  +   Y+ +        I       
Sbjct: 130 DKTPLLKMENVNWFGRNVSHSHVNGEKVGIVEDLGALPFPYDDQNIQPVSDKIIYYESMR 189

Query: 185 GCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK 244
           GC   C++C+    +       L +V  E    I + V ++  + +  N         + 
Sbjct: 190 GCPFQCSYCLSSTLQ-KVRFLPLERVFRELDFFIRHDVKQVKFVDRTFNV--------DI 240

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304
                ++  L E K      +  +    + D L++        +    + +QS  D  L+
Sbjct: 241 RRTKAIIAYLVEKKCATNFHFEIAGDL-LDDELLEIIAKAPKGLLQFEIGIQSTHDETLE 299

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
           ++ R+    + R+ + R+     +  +  D I G P ET   F+ + D    I       
Sbjct: 300 AITRKTDLKKIRKYVKRLIG-FKNCHVHVDLIAGLPKETYAVFKKSFDETIAIEPDMLQL 358

Query: 365 FKYSPRLGTPGSNMLEQ 381
                  GT      ++
Sbjct: 359 GFLKLLKGTKIRKEADK 375


>gi|298368837|ref|ZP_06980155.1| lipoyl synthase [Neisseria sp. oral taxon 014 str. F0314]
 gi|298282840|gb|EFI24327.1| lipoyl synthase [Neisseria sp. oral taxon 014 str. F0314]
          Length = 332

 Score = 77.7 bits (190), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 43/250 (17%), Positives = 84/250 (33%), Gaps = 23/250 (9%)

Query: 127 VVGPQTYYRLPELLERARFGKRVVDT-----DYSVEDKFERLSIVDGGYNRKRGVTAFLT 181
           VV  Q   + PE +      ++  +      +  +    E  S  + G    +G   F+ 
Sbjct: 32  VVPLQEKLKKPEWIRAKLPSRKFFEIKDILREQKMHTVCEEASCPNIGECFSKGTATFMI 91

Query: 182 IQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD 241
           + + C + C FC V + R   +     +  + A  +    +  + +   +    R    D
Sbjct: 92  MGDICTRRCPFCDVGHGRPNML--DPDEPKNLAESVKAMNLRYVVITSVD----RDDLRD 145

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV-LMPY---LHLPVQS 297
           G    F+D + ++ E     ++       R   D  +K   +    +M +    H  +  
Sbjct: 146 GGAQHFADCIKAIRETSPNTKIEILVPDFRGRLDIALKILAETPPDVMNHNLETHPSLY- 204

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
                 K             ++ R + + P I   S  +VG  GETD+D R  M  +   
Sbjct: 205 ------KKARPGANYQHSLDLLRRYKEMMPHIPTKSGIMVGL-GETDEDVREIMRDMRAH 257

Query: 358 GYAQAFSFKY 367
                   +Y
Sbjct: 258 NIEMITIGQY 267


>gi|144900181|emb|CAM77045.1| Fe-S oxidoreductase [Magnetospirillum gryphiswaldense MSR-1]
          Length = 569

 Score = 77.7 bits (190), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 54/286 (18%), Positives = 102/286 (35%), Gaps = 46/286 (16%)

Query: 98  GGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVD------ 151
             D+ +V  G    A    IL  +P ++ VV  +       LL     GK   D      
Sbjct: 169 KPDVKIVFGGGYTSACHPSILFANPFIDFVVFNEGEGGFHALLMALDEGKTSFDGIANLI 228

Query: 152 ------------------TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK-FCTF 192
                              D+  +   +        Y +   V   ++  +GC    CTF
Sbjct: 229 WRNPEAEDGWVKNAKSPSVDFKTQPYPDFSDYKLAAYFQPEPVFPIMS-SKGCAWDKCTF 287

Query: 193 CVVPYTR-GIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFSDL 250
           C    +  G   + +  +VV E   +++  GV     + + ++             F  +
Sbjct: 288 CTHHRSYSGAHRAAATDRVVGEIEHMVNTYGVKRFAFVDEMIS----------PGRFRRI 337

Query: 251 LYSLSEIKGLVRLRYTTSHPRDM--SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
              L  I+  + + +      D+  ++ +++          YL   V+S + RI+  M++
Sbjct: 338 SEDL--IEKNIDITWYALAKPDLIYTEEILEIM--HKGGCRYLLWGVESANQRIIDLMDK 393

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
             T     +++   RS R  I      IVGFP ET+ ++  TM+ +
Sbjct: 394 GTTPDGVAEVLA--RSTRAGIRNHLFIIVGFPSETEAEYLETMEFL 437


>gi|253566285|ref|ZP_04843739.1| coproporphyrinogen III oxidase [Bacteroides sp. 3_2_5]
 gi|251945389|gb|EES85827.1| coproporphyrinogen III oxidase [Bacteroides sp. 3_2_5]
          Length = 377

 Score = 77.7 bits (190), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 45/234 (19%), Positives = 82/234 (35%), Gaps = 22/234 (9%)

Query: 186 CDKFCTFCVV-PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR---GKGLD 241
           C   C +C     TR     R +  +  E        +    L G+ +       G    
Sbjct: 11  CKTRCIYCDFYSTTRSEWKGRYIEALCKELE------MRYTYLKGKPIETLYFGGGTPSQ 64

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPR--DMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
            ++  F  +  ++  + G+      T      D+    ++   +L      + + +Q+  
Sbjct: 65  LDEKDFRKVFDTVRRVYGMENCHEITLEANPDDLCPEFLQMLSELP--FNRISMGIQTFD 122

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIA-ISSDFIVGFPGETDDDFRATMDLVDKIG 358
           D  LK + RRH A +  + ++  R+       IS D I G PGET + +   +     + 
Sbjct: 123 DTTLKLLKRRHNAAQAIRAVELCRA--HGFRNISIDLIYGLPGETTERWEKDLQQAIALD 180

Query: 359 YAQAFSFKYSPRLGTPGSNML-----EQVDENVKAERLLCLQKKLREQQVSFND 407
                ++      GTP   ML     E+VDE+        L  +L E      +
Sbjct: 181 VEHISAYHLIYEEGTPIYKMLQKHQVEEVDEDSSVRFFTLLIDRLHEAGYEHYE 234


>gi|240128185|ref|ZP_04740846.1| lipoyl synthase [Neisseria gonorrhoeae SK-93-1035]
 gi|268686584|ref|ZP_06153446.1| lipoyl synthase [Neisseria gonorrhoeae SK-93-1035]
 gi|268626868|gb|EEZ59268.1| lipoyl synthase [Neisseria gonorrhoeae SK-93-1035]
          Length = 327

 Score = 77.7 bits (190), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 43/250 (17%), Positives = 85/250 (34%), Gaps = 23/250 (9%)

Query: 127 VVGPQTYYRLPELLERARFGKRVVDT-----DYSVEDKFERLSIVDGGYNRKRGVTAFLT 181
           VV  Q   + PE +      ++  +      +  +    E  S  + G    +G  AF+ 
Sbjct: 28  VVPLQEKLKKPEWIRAKLPSRKFFEIKDILREQKMHTVCEEASCPNIGECFSKGTAAFMI 87

Query: 182 IQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD 241
           + + C + C FC V + R   +     +  + A  +    +  + +   +    R    D
Sbjct: 88  MGDICTRRCPFCDVGHGRPNML--DPDEPKNLAESVKAMNLRYVVITSVD----RDDLRD 141

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV-LMPY---LHLPVQS 297
           G    F+D + ++ E     ++       R   D  +K   +    +M +    H  +  
Sbjct: 142 GGAQHFADCIKAIRETSPNTKIEILVPDFRGRLDIALKILAETPPDVMNHNLETHPSLY- 200

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
                 +             ++ R + + P I   S  +VG  GETD+D R  M  +   
Sbjct: 201 ------RKARPGANYQHSLDLLKRYKEMMPHIPTKSGIMVGL-GETDEDVREIMRDMRAH 253

Query: 358 GYAQAFSFKY 367
                   +Y
Sbjct: 254 NIEMITIGQY 263


>gi|253702143|ref|YP_003023332.1| radical SAM protein [Geobacter sp. M21]
 gi|251776993|gb|ACT19574.1| Radical SAM domain protein [Geobacter sp. M21]
          Length = 474

 Score = 77.7 bits (190), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 67/363 (18%), Positives = 112/363 (30%), Gaps = 66/363 (18%)

Query: 95  IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG-------- 146
            K     + ++ G        E+L  S  V+ VV  +    L  LL     G        
Sbjct: 93  KKVNPGTVTIIGGVHPSFMYREVLEASTSVDYVVIGEGEGALKLLLATLEKGGDPAEVPG 152

Query: 147 -------KRVVDTDYSVEDKFERLS--------IVDGGYNRKRGVTAFLTIQEGCDKFCT 191
                  K  V  +  +    + L          +   +       A ++   GC   C+
Sbjct: 153 IAYRVGGKVAVTREAPLVTDLDALPAAWDLLDWPLYSYFIIPGSRFAAVSTSRGCGHDCS 212

Query: 192 FC-VVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFSD 249
           FC    + R     R  S+V DE   L +  G     L  ++    RG+        F  
Sbjct: 213 FCSQQKFWRKQWRPRDPSKVADEIAHLHEAYGADVFLLTDEHPTRDRGR--------FEK 264

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMP-------YLHLPVQSGSDRI 302
           LL  L  I   + +        D          D D+          ++ + ++    + 
Sbjct: 265 LLDLL--IDKGLPIHLILETRVD------DVIRDRDIFWKYRKAGVAHVSIGIEGAEQQR 316

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           + ++ +  +    R+ ++ I      I   + FI+GFP ET    +AT+          A
Sbjct: 317 VDALGKGISIDAAREALEIIHE--HGIVSEASFILGFPDETHASVQATLQRAKLCNPDNA 374

Query: 363 FSFK------------YSPR---LGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFND 407
             F             Y PR    G    N ++ V E      L  L+  L E    F  
Sbjct: 375 NFFALAPWPYGESYREYRPRIRETGYSKYNFIDPVLEPEAMT-LAELRGALAECYRKFYT 433

Query: 408 ACV 410
           A +
Sbjct: 434 AKL 436


>gi|146304011|ref|YP_001191327.1| radical SAM domain-containing protein [Metallosphaera sedula DSM
           5348]
 gi|145702261|gb|ABP95403.1| Radical SAM domain protein [Metallosphaera sedula DSM 5348]
          Length = 533

 Score = 77.7 bits (190), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 45/301 (14%), Positives = 96/301 (31%), Gaps = 31/301 (10%)

Query: 110 AQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIV--- 166
               GE       +VNV+       ++  ++ R + G         +    ++L +    
Sbjct: 125 VVVMGEGDEIMMELVNVLENNDDLGKVKGIVYRDKEGNIKRTPPRPLIKSLDKLPMPAFD 184

Query: 167 -------DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLI 218
                        +    A +    GC   C FC V  T G    ++S  +++ E  ++ 
Sbjct: 185 LVDREKYTFDVFGRNETVACMETSRGCPYACEFCSVTPTWGNSWRNKSNERILKELSEIK 244

Query: 219 DNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLI 278
             G   +     ++   +    D  +    D +  +      +   +      D++    
Sbjct: 245 RLGYSWVFFT-DDIFVVQPNIKD--RMKLFDQMMEMG-----LSTNFIAQMRVDITAKNP 296

Query: 279 KAHGD-LDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIV 337
           +      D  +    L V+SG D  LK +++        + +  +      + +    I+
Sbjct: 297 EVIKKASDAGLRIAFLGVESGDDETLKKLHKGTVTSLAEKAVKVLHEN--GVVVLIGLIL 354

Query: 338 GFPGETDDDFRATMDL---VDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCL 394
           G P +T      T+     +  +G        Y+P  GT          + +K +RL  L
Sbjct: 355 GAPYDTFKKMMKTIRFAYRLSDLGADSVQFSIYTPLPGTRVFV------KALKEKRLFTL 408

Query: 395 Q 395
            
Sbjct: 409 N 409


>gi|298529527|ref|ZP_07016930.1| Radical SAM domain protein [Desulfonatronospira thiodismutans
           ASO3-1]
 gi|298510963|gb|EFI34866.1| Radical SAM domain protein [Desulfonatronospira thiodismutans
           ASO3-1]
          Length = 492

 Score = 77.7 bits (190), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 51/324 (15%), Positives = 108/324 (33%), Gaps = 34/324 (10%)

Query: 57  NSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEE 116
           + ++ AD+++++   +++K+A +V S                    VV  G    ++ E 
Sbjct: 61  SDIEWADMVLVSAMLVQDKSAREVISRSKE------------KGKTVVAGGPAFTSQPE- 107

Query: 117 ILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGV 176
                P V+ ++  +    LP  L+    GK             +R  + +      R  
Sbjct: 108 ---SYPEVDHLILNEAETTLPLFLKDLEMGKPERIYTSQERPALDRTPVPEWSLIDMRKY 164

Query: 177 TAF-LTIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVCEITLLGQNVNA 234
            +  +    GC   C FC +    G    ++S  Q+++E   L + G      +  +   
Sbjct: 165 ASMAIQYSRGCPYQCEFCDIVIMNGRRPRTKSPEQMINEVETLYNAGWRGSLFIVDD--- 221

Query: 235 WRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT----TSHPRDMSDCLIKAHGDLDVLMPY 290
                  G K     +L SL E +      +      S        L+      +     
Sbjct: 222 ----NFIGNKRKVKKMLASLKEWQAEHDYPFVLFTEASVELADDQELMDLMRQSN--FNK 275

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYR-QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           + L +++ +   L+   +   +     Q ++ I      + +   FIVGF  + +  F +
Sbjct: 276 VFLGLETPNKESLQECGKNQNSSRDLVQAVETIHQN--GMLVMGGFIVGFDNDNESIFES 333

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGT 373
            +  + + G   A          T
Sbjct: 334 QIRFIQQSGVVTAMVGLLGALPRT 357


>gi|302036213|ref|YP_003796535.1| hypothetical protein NIDE0843 [Candidatus Nitrospira defluvii]
 gi|300604277|emb|CBK40609.1| conserved protein of unknown function, containing B12-binding and
           radical SAM domain [Candidatus Nitrospira defluvii]
          Length = 544

 Score = 77.7 bits (190), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 78/228 (34%), Gaps = 25/228 (10%)

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR-GIEISRSLSQVVD 212
            S+E  F     +D            +    GC   C FC +P    G   +RS   VVD
Sbjct: 185 ESLELDFVESMPLDVPAVLSMERFTTMQTSRGCPWPCVFCDIPIFNEGKWRARSAQHVVD 244

Query: 213 EARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI-KGLVRLRYTTSHPR 271
           E + L  NG   +  +  +               F      +  I KG++  + T     
Sbjct: 245 ELKYLEANGYGSVYFVDDH---------------FLLQPKRIDAICKGIIDAKLTIQWGI 289

Query: 272 D-----MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
           +     ++  L  A          +   ++SGS +IL  + +  T  E    +   +   
Sbjct: 290 EGRVDSVAQHLFPAMAQAH--CRTVMFGIESGSQKILDRLQKEQTLAEVETAVRNAKKAG 347

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
            +I +   F VG P ET +D + T D   K+        +     GTP
Sbjct: 348 IEI-VHGFFTVGNPDETVEDMQKTFDFASKLPLDTFGFNRLCVYRGTP 394


>gi|298529259|ref|ZP_07016662.1| Radical SAM domain protein [Desulfonatronospira thiodismutans
           ASO3-1]
 gi|298510695|gb|EFI34598.1| Radical SAM domain protein [Desulfonatronospira thiodismutans
           ASO3-1]
          Length = 565

 Score = 77.7 bits (190), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 57/300 (19%), Positives = 110/300 (36%), Gaps = 34/300 (11%)

Query: 99  GDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA--------------- 143
              + V+ G  A    E +L+  P ++ V+  +  + L +L+ R                
Sbjct: 95  PGTVTVLGGIGATFLWEHLLKHYPQIDYVLLGEGEFSLLQLVSRLESRDHSNLEDLKGLA 154

Query: 144 -RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI- 201
            R G+  V T +    +          Y   + + +      GC   C+FC  P   G  
Sbjct: 155 FRRGEETVCTGFPEPIQDLDQLPSPARYFTFQHLVS----SRGCPSNCSFCGSPEFWGRK 210

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
               S +  VD  ++L   GV            +       +     ++   +   +GL 
Sbjct: 211 VRFHSPAYFVDMLQELYKKGVTF--------FFFSDDTFTLKPERVIEICRLIIN-RGLK 261

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
              +  S    + + ++        +   +   ++SGS +I K++N++    E +   ++
Sbjct: 262 ISWFAISRVNCVDEEMLTWMRRAGCI--QISYGIESGSPKIRKALNKKTGNQEIQTAFEQ 319

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
             +V   I   + FI G PGET +  R +MDL+++I    A  +      GT     L+Q
Sbjct: 320 --TVACGILARAYFIYGSPGETRETIRESMDLMERIKPLSAVFYILEMFPGTALYRELQQ 377


>gi|159041881|ref|YP_001541133.1| radical SAM domain-containing protein [Caldivirga maquilingensis
           IC-167]
 gi|157920716|gb|ABW02143.1| Radical SAM domain protein [Caldivirga maquilingensis IC-167]
          Length = 546

 Score = 77.7 bits (190), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 54/305 (17%), Positives = 104/305 (34%), Gaps = 26/305 (8%)

Query: 80  VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL 139
               +  ++   +   K  G L V V G  A           P +    G    +     
Sbjct: 138 FRKTMNNLKPYIDDAKKTNG-LKVFVGGPSAWQW-----LYFPEIMNYYGIDLVFDGEGD 191

Query: 140 LERARFGKRVVDTD----YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
           +      KRV + D    Y    + +  SI +    +   V   + I  GC + C FC V
Sbjct: 192 VAVVDLAKRVFNGDPLPRYVYLGRRDSPSIDEIKTIKGASVNGLVEIGRGCPRSCAFCSV 251

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
                      LS++ +E +  + NGV    +  ++V  +    +  +     +L     
Sbjct: 252 TL--RALRWYPLSKIEEELKVNVRNGVVNGLIHSEDVPLYGSPTIIPKPEKLIELHKLAK 309

Query: 256 EIKG--------LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307
                       L  + Y       +   L +   D +       + +++GS R+ K + 
Sbjct: 310 RYYKTLAWSHTTLAAVLYGEKMQGKLMSKLAEIIEDENQEWWGAQVGLETGSRRLAKLIM 369

Query: 308 ----RRHTAYEYRQIIDRIRSVRPDIA--ISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
                 +    +  ++    S+  +I    +   IVG PGET DD   T++L+++I   +
Sbjct: 370 PGKAAPYKIENWWDVVTEALSIMHEIKLIPALTIIVGLPGETADDVNETIELIERIKPYR 429

Query: 362 AFSFK 366
           +    
Sbjct: 430 SLVVP 434


>gi|323446645|gb|EGB02733.1| hypothetical protein AURANDRAFT_9774 [Aureococcus anophagefferens]
          Length = 94

 Score = 77.3 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 26/87 (29%), Positives = 45/87 (51%), Gaps = 2/87 (2%)

Query: 312 AYEYRQIIDRIRSVRPD-IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370
             ++R ++D + +     +++ +D I GFPGETDDDF AT  LV+   +      ++  R
Sbjct: 1   VADFRAVVDGLAARVDGGLSLMTDVICGFPGETDDDFDATYALVEDYAFGLINISQFYAR 60

Query: 371 LGTPGSNMLEQVDENVKAERLLCLQKK 397
            GTP ++M ++V      +R   L   
Sbjct: 61  PGTPAASM-KRVHTATVKDRSRRLSAL 86


>gi|261364603|ref|ZP_05977486.1| lipoyl synthase [Neisseria mucosa ATCC 25996]
 gi|288567191|gb|EFC88751.1| lipoyl synthase [Neisseria mucosa ATCC 25996]
          Length = 328

 Score = 77.3 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 44/250 (17%), Positives = 84/250 (33%), Gaps = 23/250 (9%)

Query: 127 VVGPQTYYRLPELLERARFGKRVVDT-----DYSVEDKFERLSIVDGGYNRKRGVTAFLT 181
           VV  Q   + PE +      K+  +      +  +    E  S  + G    +G   F+ 
Sbjct: 28  VVPLQEKLKKPEWIRAKLPSKKFFEIKDILREQKMHTVCEEASCPNIGECFSKGTATFMI 87

Query: 182 IQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD 241
           + + C + C FC V + R   +     +  + A  +    +  + +   +    R    D
Sbjct: 88  MGDICTRRCPFCDVGHGRPNML--DPDEPKNLAESVKAMNLRYVVITSVD----RDDLRD 141

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV-LMPY---LHLPVQS 297
           G    F+D + ++ E     ++       R   D  +K   +    +M +    H  +  
Sbjct: 142 GGAQHFADCIKAIRETSPNTKIEILVPDFRGRLDIALKILAETPPDVMNHNLETHPSLY- 200

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
                 K             ++ R + + P I   S  +VG  GETD+D R  M  +   
Sbjct: 201 ------KKARPGANYQHSLDLLRRYKEMMPHIPTKSGIMVGL-GETDEDVREIMRDMRAH 253

Query: 358 GYAQAFSFKY 367
                   +Y
Sbjct: 254 NIEMITIGQY 263


>gi|157363623|ref|YP_001470390.1| radical SAM domain-containing protein [Thermotoga lettingae TMO]
 gi|157314227|gb|ABV33326.1| Radical SAM domain protein [Thermotoga lettingae TMO]
          Length = 548

 Score = 77.3 bits (189), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 44/267 (16%), Positives = 88/267 (32%), Gaps = 21/267 (7%)

Query: 109 VAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDG 168
            A+  G    +     + ++GP     L   L      +   +    ++      + +  
Sbjct: 109 YAKRGGSRAYQSPIHADYLLGPDLAIDLYNYLFETNIPR---NDWRIIQTAAVWGASIIK 165

Query: 169 GYNRKRGVTAFLTIQEGCDKF--CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEIT 226
            + R   +   + +  GC++   C+FC+ P       SR +  V++E  +L  NG     
Sbjct: 166 QHPRYPHIICEVELSRGCERRTHCSFCIEPIFYPGFTSRPVQHVLEEITELYKNGCVAFR 225

Query: 227 LLGQNVNAWRGKGLDGEKC--TFSDLLYSL----SEIKGLVRLRYTTSHPRDM---SDCL 277
                         DG+ C   F +L   +     EIK L       +           +
Sbjct: 226 FGRTANILAYYFEKDGKPCKEAFKELYEGIWKSCPEIKVLHHDNANPAFITHFERECTEI 285

Query: 278 IKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV-------RPDIA 330
           ++     +     L   V+S   ++LK  N  +      + I+ +  +        P + 
Sbjct: 286 LETIAKWNTSGDVLSFGVESFDVKVLKMNNIMNDPENIVRAIEIVNEIGKFRADGIPKLL 345

Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKI 357
              + + G  GETD  F   +  +  I
Sbjct: 346 PGINLLHGLMGETDQTFEENLKWLKTI 372


>gi|223940311|ref|ZP_03632168.1| Radical SAM domain protein [bacterium Ellin514]
 gi|223891024|gb|EEF57528.1| Radical SAM domain protein [bacterium Ellin514]
          Length = 470

 Score = 77.3 bits (189), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 51/306 (16%), Positives = 102/306 (33%), Gaps = 37/306 (12%)

Query: 94  RIKEGGDLLVVVAGCVAQAEGEEILR------------RSPIVNVVVGPQTYYR-LPELL 140
             +     LV+  G  A    +E++              + IV++V  P  + +    + 
Sbjct: 104 FKEVNPKGLVIAGGMHATVAPDEMVETGVFDRVCQGAGENTIVDLVKNPMDFPQLFKGVG 163

Query: 141 ERARFGKRVVDTDYSVEDKFERLS-IVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
            ++     ++D       +       ++       G  A +     C   CTFC      
Sbjct: 164 AKSMAEWPMMDRTLWPNPRRPNFPWPLEPKCGWGPGPVATIMTSRVCPWQCTFCNESSFI 223

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
                + + QV+DE   L        +++  +   ++             L   L +   
Sbjct: 224 PAMGRKPVDQVIDELNYLDRKFGPLGSVVIHDSMFFQNPPW---------LREWLEKYPT 274

Query: 260 LVRLRYTT-----SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
             R  +       +        + +A          + +  +SGSDR+LK +N+  TA +
Sbjct: 275 KARKVWPYWAAGRADTVRQWPDMFEALLRETK-WTSISIGFESGSDRVLKILNKECTAED 333

Query: 315 YRQIIDRIRSVRPDI--------AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
               ID +  V  D+           S+ ++G PGET +D   T+ ++  +         
Sbjct: 334 NYFAIDLLNRVADDLERQGKEAPRFWSNIMLGIPGETREDAFDTIRMLRSMRRVMPSIAY 393

Query: 367 YSPRLG 372
           Y+P  G
Sbjct: 394 YAPYPG 399


>gi|94967903|ref|YP_589951.1| radical SAM family Fe-S protein [Candidatus Koribacter versatilis
           Ellin345]
 gi|94549953|gb|ABF39877.1| Fe-S protein, radical SAM family [Candidatus Koribacter versatilis
           Ellin345]
          Length = 501

 Score = 77.3 bits (189), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 60/327 (18%), Positives = 112/327 (34%), Gaps = 52/327 (15%)

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             LG I   K +  +    L +V  G       E+ L   P V+ VV  Q      EL+ 
Sbjct: 73  MILGAIEVAKAA-KELHAKLPIVFGGWHPTLLPEQTLIE-PYVDFVVRRQGESSFLELVN 130

Query: 142 RA---RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTI---------------- 182
                + G+ +    + + D  E              + A+  +                
Sbjct: 131 AIASGQSGEFISGVSWKIRDHCEHNVDRPTQPLDALPLPAYDMVDFDAYERTAGERKLAY 190

Query: 183 --QEGCDKFCTFCV-VPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGK 238
               GC   C +C  + + +    + +  +VV E   L+    + EI LL  N       
Sbjct: 191 ATSVGCPYACNYCTDMVFYKRRFNALNAERVVAEMTGLVAKFKIAEIALLDSNFP----- 245

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV------LMPYLH 292
                     D+  +++  +G+             S   +    D +V       + ++ 
Sbjct: 246 ---------VDVKRAVAIARGIYESGVPFRWTFQASTDFLFRMSDDEVKVLRASGVSHMG 296

Query: 293 LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP-DIAISSDFIVGFPGETDDDFRATM 351
              +S S+ +LK MN+RH      ++ +  R      I ++ + I G+PGET++D   T 
Sbjct: 297 FGTESTSESVLKLMNKRHQR--MNEVYETARKADAAGIRVTFNLIFGYPGETENDRAETF 354

Query: 352 DLVDKI--GYAQAFSFK--YSPRLGTP 374
             + +I   +         ++P  G P
Sbjct: 355 RAMSEIAREFQSVSFSPNIFTPYPGIP 381


>gi|261403638|ref|YP_003247862.1| Radical SAM domain protein [Methanocaldococcus vulcanius M7]
 gi|261370631|gb|ACX73380.1| Radical SAM domain protein [Methanocaldococcus vulcanius M7]
          Length = 514

 Score = 77.3 bits (189), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 61/337 (18%), Positives = 129/337 (38%), Gaps = 42/337 (12%)

Query: 170 YNRKRGVTAFLTIQEGCDK----FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEI 225
           + +   +   +    GC +     C+FC  P   G    R+   +V E   L + G+   
Sbjct: 178 HPKYPNIIVEVETYRGCSRVLSGGCSFCTEPRRFGSPKFRNEEDIVKEIHALWNEGIKYF 237

Query: 226 TLLGQNVNAWRGKGLDGEK--------CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCL 277
            +  Q       K +D EK             L   +  +     L    ++P  ++   
Sbjct: 238 RIGRQPCIFSY-KAVDSEKEEVPTPNVKAIEKLFKGIRNVSDPKVLHVDNANPAVIARHE 296

Query: 278 IKAHGDLDVLMPY------LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV------ 325
            ++     +L+ Y          V+S  ++++K  N   T  +  + ++ I  +      
Sbjct: 297 EESKEVAKILVKYCTSGNVAAFGVESFDEKVIKVNNLLTTPEDVLKAVEIINKIGGHRGE 356

Query: 326 --RPDIAISSDFIVGFPGETDDDFRATMDLVDKI---GYA--QAFSFKYSPRLGTPGSNM 378
              P +    + + G  GE  + F+   + + KI   G+   +    +  P  GT  +  
Sbjct: 357 SGLPYLLPGINLLFGLKGERKETFQINFEYLKKIYDMGFMLRRINIRQVVPFFGTEIT-- 414

Query: 379 LEQVDENVKAERL-LCLQKKLREQQVSFNDACV---GQIIE-VLIEKHGKEKGKLVGR-- 431
           ++ + +  K ++L L  ++K+RE+  +     V   G I+  VL+E   ++ G   GR  
Sbjct: 415 IKDIKKAEKRKKLFLWFKEKVREEIDNRMLKRVAPKGVILRDVLVE-VKEKDGLYFGRQF 473

Query: 432 SPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
             +   + +  KN  +G  + V++ D    ++ G +V
Sbjct: 474 GSYPLLIGILEKNLEVGTFVDVKVVDYGRRSITGVVV 510


>gi|326389821|ref|ZP_08211385.1| Radical SAM domain protein [Thermoanaerobacter ethanolicus JW 200]
 gi|325994089|gb|EGD52517.1| Radical SAM domain protein [Thermoanaerobacter ethanolicus JW 200]
          Length = 562

 Score = 77.3 bits (189), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 53/299 (17%), Positives = 102/299 (34%), Gaps = 26/299 (8%)

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLP--ELLERARFG 146
           NL  +  K    +++V+ G  A  + + +L +  +  +V+G          E LE  R  
Sbjct: 71  NLVENIKKILPKVILVLGGPEASYDVDNLLSKGFVDYIVLGEGEIAFKELLEALEGKRDI 130

Query: 147 KRVVDTDYSVED-----------KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
           K V    Y V+                + I             +     GC   C +C+ 
Sbjct: 131 KEVAGISYMVDGQIVIQPQKDYVNLNEVPISYEEEEDLSNKLVYYETSRGCPFKCAYCL- 189

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
                     SL +V  + +  +D  V  + L+ ++ N+         +    ++L  + 
Sbjct: 190 SSIDNKLRYESLEKVERDLKWFVDKNVKILKLIDRSFNS--------NRKRAREILNIMK 241

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
           +I G         +P  + +  I+    L+       + VQ+ +   LK ++R     + 
Sbjct: 242 KIGGDTVFHCEV-NPELVDEEFIEELKGLEK-RIQFEVGVQTTNKNSLKKISRITAVEKA 299

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
            + I  +R     I +  D I G P ++   F    D V  +   +          GTP
Sbjct: 300 LRGIKLLREA--GIKLHVDLIAGLPEDSFGTFSKAFDDVYNLKPDEIQLGFLKVLKGTP 356


>gi|269929310|ref|YP_003321631.1| Radical SAM domain-containing protein [Sphaerobacter thermophilus
           DSM 20745]
 gi|269788667|gb|ACZ40809.1| Radical SAM domain protein [Sphaerobacter thermophilus DSM 20745]
          Length = 491

 Score = 77.3 bits (189), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 60/332 (18%), Positives = 102/332 (30%), Gaps = 50/332 (15%)

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           L     L          L +V  G        E+  R+  V+ VV          LL+  
Sbjct: 71  LSHAVPLCRRIKARHPGLTIVWGGYFPTQHY-EVCLRAEFVDYVVRGHGEVTFVALLDAL 129

Query: 144 RFG----------------KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTI----- 182
             G                  +V T        +RL   D  Y R               
Sbjct: 130 HDGTNPSTIPGLAYRHPESGEIVTTGMPPIPHPDRLP--DYPYQRVEMARYVRPTFLGRR 187

Query: 183 ------QEGCDKFCTFC-VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW 235
                   GC  FC FC VV    G   ++S  +    A +L++         G +   +
Sbjct: 188 TLPHHSSYGCPFFCNFCAVVNMVNGRWFAQSAERTASVASRLVEEW-------GVDAVEF 240

Query: 236 RGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPV 295
                   +   ++    +  +                SDC  +   D    +  + L  
Sbjct: 241 YDNNFFVHEARTAEFAERIRSLGIAWWGEGRIDTLWKYSDCTWELMRDSG--LRMVFLGA 298

Query: 296 QSGSDRILKSMNRR--HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
           +SGSD  L+ MN+    +  +   I +++R     I     F++G P + + D R T+D 
Sbjct: 299 ESGSDETLQRMNKGKSASTEKTLAIAEKMRRY--GIVPEFSFVLGNPPDPEADVRQTLDF 356

Query: 354 VDKIGY----AQAFSFKYSPRLGTPGSNMLEQ 381
           +  +      A+   + Y+P        + EQ
Sbjct: 357 IRTVKRVNPDAEIIFYMYTPVP--LAGELYEQ 386


>gi|256372069|ref|YP_003109893.1| Coproporphyrinogen dehydrogenase [Acidimicrobium ferrooxidans DSM
           10331]
 gi|256008653|gb|ACU54220.1| Coproporphyrinogen dehydrogenase [Acidimicrobium ferrooxidans DSM
           10331]
          Length = 363

 Score = 77.3 bits (189), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 77/222 (34%), Gaps = 6/222 (2%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C +C             +  V  E    ++ G+ +      +V    G     +  
Sbjct: 22  CRRRCAYCDFSVAIREPDRDFVDDVERELANRVEEGLVDERFCATSVFLGGGTPSYLDDG 81

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
             + L+     + G             +     +     +  +  + + +QS  DR+L  
Sbjct: 82  AVARLIRLARPVSGAEVTIEVNPEDLSVG----RVARWREAGVGRISVGLQSLDDRVLAH 137

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           + R H A +    I  +     D+ +S D I G P E D  +R T+  V  +G     ++
Sbjct: 138 LGRGHNAADALGRIRAVVEAFADLRVSVDLIFGDPLEDDASWRRTLAGVVDLGIGHVSTY 197

Query: 366 KYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFND 407
             +   GT   ++  +VD+  +A R       L     ++ +
Sbjct: 198 ALTVEPGTRFRSL--RVDDETQARRYEVADAVLGAAGYAWYE 237


>gi|149917140|ref|ZP_01905640.1| methyltransferase [Plesiocystis pacifica SIR-1]
 gi|149822056|gb|EDM81449.1| methyltransferase [Plesiocystis pacifica SIR-1]
          Length = 554

 Score = 77.3 bits (189), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 48/328 (14%), Positives = 99/328 (30%), Gaps = 53/328 (16%)

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           +++L  +         +V+ G  A +    IL   P +   V  +  +    LL+    G
Sbjct: 120 LKDLAEALKHRYPHATIVLGGENASSFWAHILDHCPQIEACVLGEGEHTFLRLLDALARG 179

Query: 147 K--------------------------------RVVDTDYSVEDKFERLSIVDGGYNRK- 173
           +                                R+ + D      ++   +      R+ 
Sbjct: 180 EALTGVPGLAIRAPHDHPDTGRSGAPMKTAPAARIAELDALPRPAWDLFPVDAYLDLRRS 239

Query: 174 ----RGVTAFLTIQEGCDKFCTFCVVPYTR-GIEISRSLSQVVDEARKLIDN-GVCEITL 227
               RG +  L    GC   C+FC  P         RS  +VVDE    ++   +  + L
Sbjct: 240 GGVDRGRSMPLLTSRGCPYKCSFCSSPQMWTTRYQRRSPERVVDEIEGYVERYAITNVDL 299

Query: 228 LGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL 287
                   +   ++  K      +    ++    R     +               +   
Sbjct: 300 NDLTAMLTKDWMIEFAKAMIDRGVEVSIQLPSGTRSEAVDAEAAQWLYR-----AGVRNF 354

Query: 288 MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDF 347
                   +SGS + L+ ++++      R  +D   ++   +   +  I+GFP E   + 
Sbjct: 355 C----YAPESGSAQTLERIHKKVKLPRLRASLDA--AIEAGLTTHASIIIGFPHEGPREL 408

Query: 348 RATMDLVDKI---GYAQAFSFKYSPRLG 372
             T   V ++   G        ++P  G
Sbjct: 409 LDTYGFVLRLALDGLDTVAVMVFAPYPG 436


>gi|269929313|ref|YP_003321634.1| Radical SAM domain-containing protein [Sphaerobacter thermophilus
           DSM 20745]
 gi|269788670|gb|ACZ40812.1| Radical SAM domain protein [Sphaerobacter thermophilus DSM 20745]
          Length = 466

 Score = 77.3 bits (189), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 52/266 (19%), Positives = 92/266 (34%), Gaps = 25/266 (9%)

Query: 128 VGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVD------GGYNRKRGVTA--- 178
            GP     +  ++ R   G+ V         K + L   D        Y R         
Sbjct: 135 YGPNGMEHIQGIVYRNGDGQLVRTEPRPYIPKLDELPFPDRAAIDIPRYVRTWREHHGLG 194

Query: 179 --FLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNV-NAW 235
              L    GC   CT+C           RS   V DE   +I+    ++     +V    
Sbjct: 195 SVSLITARGCPYTCTWCSHAVYGYSHRRRSPENVADELEHIIETYQPDMVWYADDVFTIH 254

Query: 236 RGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPV 295
           +G          ++L        G+     T S    +++ +I+   ++     +  +  
Sbjct: 255 KGWFFRYA----AELKRR-----GINIPFETISREDRLNEEIIRTLKEMGAFRIW--IGA 303

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
           +SGS RIL +M RR  A   R+++  ++  R  I      ++G+ GE   D  AT++ + 
Sbjct: 304 ESGSQRILDAMRRRTKAERVREMVHLLQ--RHGIEAGMFIMLGYEGEEMPDLEATVEHLK 361

Query: 356 KIGYAQAFSFKYSPRLGTPGSNMLEQ 381
                   +    P   TP   M++ 
Sbjct: 362 ASNPDVFLTTVAYPIKNTPYYEMVKD 387


>gi|20807472|ref|NP_622643.1| Fe-S oxidoreductase family protein [Thermoanaerobacter
           tengcongensis MB4]
 gi|20515999|gb|AAM24247.1| Fe-S oxidoreductases family 2 [Thermoanaerobacter tengcongensis
           MB4]
          Length = 562

 Score = 77.3 bits (189), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 57/307 (18%), Positives = 115/307 (37%), Gaps = 26/307 (8%)

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLP--ELLE 141
           +    NL  +  K   ++++V+ G  A  + E +L +  +  VV+G          E LE
Sbjct: 66  IEIALNLAENMKKILPNVVMVLGGPEASYDVENLLSKGFVDYVVIGEGEIAFKELLEALE 125

Query: 142 RARFGKRVVDTDYSVEDK--------FERLSIVDGGYNRKRGVTA---FLTIQEGCDKFC 190
             +  K V    Y VE++        +  L  V  GY+ +  ++    +     GC   C
Sbjct: 126 GKKDLKEVPGIGYKVEEEIVIQPQKYYVNLDEVPIGYDEEEDLSDKLVYYETSRGCPFKC 185

Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDL 250
            +C+      +    SL +V  + +   +  V  + L+ ++ NA         +    ++
Sbjct: 186 AYCL-SSIDNVLRYESLEKVEKDLKWFANKNVKILKLVDRSFNA--------NRKRAREI 236

Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
           L  +  I+G +       +P  +++  I    DL        + VQ+ +   L+ ++R  
Sbjct: 237 LSIMKRIEGEMVFHCEV-NPELVNEEFISELEDL-KGRIQFEVGVQTTNKVTLRKISRTT 294

Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370
                 + I+ ++     I +  D I G P ++   F    D V  +   +         
Sbjct: 295 AVEMALKGIELLKKA--GIKLHVDLIAGLPEDSLKTFSKAFDDVYNLKPEEIQLGFLKIL 352

Query: 371 LGTPGSN 377
            GTP + 
Sbjct: 353 KGTPLAK 359


>gi|299138054|ref|ZP_07031234.1| Radical SAM domain protein [Acidobacterium sp. MP5ACTX8]
 gi|298599984|gb|EFI56142.1| Radical SAM domain protein [Acidobacterium sp. MP5ACTX8]
          Length = 469

 Score = 77.3 bits (189), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 44/269 (16%), Positives = 94/269 (34%), Gaps = 19/269 (7%)

Query: 153 DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVD 212
            +      +    VD      +  +       GC   C +C           R   +VVD
Sbjct: 176 PWPARHAIDLHRYVDTWRTHHQQGSVNFITARGCPYKCRWCSHQVYGQTHRRRDPLKVVD 235

Query: 213 EARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
           E   L+     +I  +  +V       +   K        ++        + +      D
Sbjct: 236 ELEFLLHEYTPDIAWISDDVFTINHDWI--RKYAGEMRRRNIH-------IPFECISRAD 286

Query: 273 -MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAI 331
            +++ ++    +L     +  +  +SGS R+L SM+R     + ++ I++ R+   +I  
Sbjct: 287 RLNEEMLDLLAELGCFRIW--IGSESGSQRLLDSMDRGVKVEQVQRAIEQTRAR--NIQS 342

Query: 332 SSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-----NMLEQVDENV 386
               + G+ GE  +D  AT+  V K      F+    P  GTP        +++      
Sbjct: 343 GMFLMWGYEGEEMEDIEATIHHVSKSKPDIFFTTVSYPIKGTPYYQQIQSKLVQLGPWGK 402

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIE 415
            ++R + ++ +      +  D  +   +E
Sbjct: 403 SSDREIKIKGRHSRAYYAHADKLLRDEVE 431


>gi|91200746|emb|CAJ73798.1| hypothetical protein kuste3043 [Candidatus Kuenenia
           stuttgartiensis]
          Length = 587

 Score = 77.3 bits (189), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 47/251 (18%), Positives = 91/251 (36%), Gaps = 23/251 (9%)

Query: 127 VVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYN----RKRGVTAFLTI 182
           V G   + ++P L+ R   G   ++ +Y  ED     +    G+         +   +  
Sbjct: 261 VDGKNDFKKVPNLVYR-EKGVIKINDNYFSEDLNTLPTPDFKGFPLSLYFTPSLVLPIQT 319

Query: 183 QEGCDKF-CTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGL 240
             GC    C FC +         R    ++++ +KL             ++V   + + +
Sbjct: 320 SRGCYYRKCAFCNLHLDHRNFRLRRTDLIMEDIQKLSREYQTKCFFFTDESVPMNKLREI 379

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300
                    LL S  EIK +  +R+     + ++  ++K   +       L   ++S   
Sbjct: 380 S------QCLLESRDEIKWMGGVRF----EKALTGDVLKKMAEAG--CQKLVFGLESYCQ 427

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
           R+L  M +       ++ +D        I+     IVGFP ET+++   T+D V  +   
Sbjct: 428 RVLDKMKKGTKRDVVKKTLDECLKA--GISFHLYVIVGFPTETENEAMETLDFV--LNEE 483

Query: 361 QAFSFKYSPRL 371
              S  YS   
Sbjct: 484 YLHSAGYSCLP 494


>gi|209549108|ref|YP_002281025.1| radical SAM protein [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|209534864|gb|ACI54799.1| Radical SAM domain protein [Rhizobium leguminosarum bv. trifolii
           WSM2304]
          Length = 591

 Score = 76.9 bits (188), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 45/278 (16%), Positives = 97/278 (34%), Gaps = 20/278 (7%)

Query: 105 VAGCVAQAEGEEI---LRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFE 161
           V+GC++  +G+ +     R   +++  G +   RL  +L  A  G+     ++  +    
Sbjct: 127 VSGCLSMLDGKAVGLEACRDMGISMFAG-EAEGRLEMVLRDAASGELKPLYNFMNDLPGI 185

Query: 162 RLSIVDG----GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI-EISRSLSQVVDEARK 216
             + V         R  G++       GC   C+FC +   +G     RS   V    R 
Sbjct: 186 GGTPVPFLPKDNIQRTLGLSTSFDAGRGCPYQCSFCTIINVQGRKSRFRSADDVEKLVRM 245

Query: 217 LIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDC 276
               G+ +  +   N    +            D L  L E  G+                
Sbjct: 246 NWAQGIHKFFITDDNFARNKDWEA------IFDRLIELKERDGIPLGLMIQVDTL-CHKI 298

Query: 277 LIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA-YEYRQIIDRIRSVRPDIAISSDF 335
                      +  + + +++ +   L +  +      EYR+++   ++    I   + +
Sbjct: 299 PNFIEKSRRAGVTRVFIGLENVNPDNLTAAKKNQNKITEYRKMLLAWKAQ--GIMTLAGY 356

Query: 336 IVGFPGETDDDFRATMDLV-DKIGYAQAFSFKYSPRLG 372
           I+GFP +T +  R  + ++ +++       F  +P  G
Sbjct: 357 ILGFPADTPESIRRDIAIIQEELPLDVIEFFILTPLPG 394


>gi|218463454|ref|ZP_03503545.1| hypothetical protein RetlK5_30268 [Rhizobium etli Kim 5]
          Length = 585

 Score = 76.9 bits (188), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 45/278 (16%), Positives = 97/278 (34%), Gaps = 20/278 (7%)

Query: 105 VAGCVAQAEGEEI---LRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFE 161
           V+GC++  +G+ +     R   +++  G +   RL  +L  A  G+     ++  +    
Sbjct: 123 VSGCLSMLDGKAVGLDACRDMGISMFAG-EAEGRLDMVLRDAANGELKPLYNFMNDLPGI 181

Query: 162 RLSIVDG----GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI-EISRSLSQVVDEARK 216
             + V         R  G++       GC   C+FC +   +G     RS   V    R 
Sbjct: 182 GGTPVPFLPKDNIQRTLGLSTSFDAGRGCPYQCSFCTIINVQGRKSRFRSADDVEKLVRM 241

Query: 217 LIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDC 276
               G+ +  +   N    +            D L  L E  G+                
Sbjct: 242 NWAQGIHKFFITDDNFARNKDWEA------IFDRLIELKERDGIPLGLMIQVDTL-CHKI 294

Query: 277 LIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA-YEYRQIIDRIRSVRPDIAISSDF 335
                      +  + + +++ +   L +  +      EYR+++   ++    I   + +
Sbjct: 295 PNFIEKSRRAGVTRVFIGLENVNPDNLTAAKKNQNKITEYRKMLLAWKAQ--GIMTLAGY 352

Query: 336 IVGFPGETDDDFRATMDLV-DKIGYAQAFSFKYSPRLG 372
           I+GFP +T +  R  + ++ +++       F  +P  G
Sbjct: 353 ILGFPADTPESIRRDIAIIQEELPLDVIEFFILTPLPG 390


>gi|146304051|ref|YP_001191367.1| radical SAM domain-containing protein [Metallosphaera sedula DSM
           5348]
 gi|145702301|gb|ABP95443.1| Radical SAM domain protein [Metallosphaera sedula DSM 5348]
          Length = 530

 Score = 76.9 bits (188), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 60/294 (20%), Positives = 108/294 (36%), Gaps = 30/294 (10%)

Query: 93  SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDT 152
           SR+K   +  V+  G  A    E    R   ++V++  +    LP L++    G+ V   
Sbjct: 138 SRLKRRYNFKVIAGGPGA---WELARDRPEWLDVLMLGEAEVTLPPLVKSMLRGESVPPL 194

Query: 153 DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC-VVPYTRGIEISRSLSQVV 211
               + K E +  + G           + +  GC + C+FC + P T     +  L  + 
Sbjct: 195 VKGRDPKVEEIPPILGPTRWGE-----VQVTRGCPRGCSFCSITPET---FRTIPLDTIK 246

Query: 212 DEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS--EIKGLVRLRYTTSH 269
            E    +  G+  I L+  ++  +    L         L   +    + GL     +   
Sbjct: 247 KEVEVNLQGGIRNIDLITDDILLYGSSKLRVNHEAIVKLFTEVKGTGVDGLFWPHISAP- 305

Query: 270 PRDMSDCLIKAHGDL------DVLMPYLHLPVQSGSDRILKSMNR----RHTAYEYRQII 319
               S   ++A  D+        +MP   + ++SGS +IL+          T  E+  +I
Sbjct: 306 AVKSSPRTVQAMADIAGYDFDRSVMP--VVGLESGSLKILEKYMPAKAFPWTPREWSDVI 363

Query: 320 DRIRSVRPD--IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
               ++  D  I       +G+  ETD D + ++DLV KI     F     P  
Sbjct: 364 MDATAIMNDNYIFPCYTMTIGYKEETDGDVQESIDLVQKI-IDHDFMAWIFPLP 416


>gi|222053763|ref|YP_002536125.1| radical SAM protein [Geobacter sp. FRC-32]
 gi|221563052|gb|ACM19024.1| Radical SAM domain protein [Geobacter sp. FRC-32]
          Length = 485

 Score = 76.9 bits (188), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 63/335 (18%), Positives = 124/335 (37%), Gaps = 45/335 (13%)

Query: 79  KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPE 138
           +    L R   L     +    + V+  G       E +L   P ++  V  +  + L E
Sbjct: 89  EYEQALYRAARL---VKEVDHAITVIAGGVHVTTMPEHVLECCPSIDYCVVGEGEHVLRE 145

Query: 139 LLERAR-------------FGKRVVDTDYSVED----KFERLSIVDGGYNRKRGVTAF-- 179
           LL   +               K VV     V+D     +    +VD     ++   +F  
Sbjct: 146 LLLHLQGRGPLPEKGLAFGHDKLVVQQQAMVDDLSVLPWPDYELVDYAAYIEKPQRSFTS 205

Query: 180 ----------LTIQEGCDKFCTFCVVPYTRGI-EISRSLSQVVDEARKLIDNGVCEITLL 228
                     +    GC   CTFC V    G    +R    VVD+    +       +++
Sbjct: 206 NMPPAYPYVRMVTTRGCPFGCTFCQVETIAGRRVRTRDPVDVVDQL-FFLKERYGIGSIV 264

Query: 229 GQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLM 288
               N   G+  D  +  F +++    E+K +            ++D L++   +     
Sbjct: 265 FDEDNILLGEN-DYARRLFQEMIDRKLELKWIASAFALFL----ITDELLELMKESG--C 317

Query: 289 PYLHLPVQSGSDRILKSMNRRH--TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDD 346
             +++ ++SG++R+LK +  +         +II ++++    I   ++FI+GFPGET D+
Sbjct: 318 VGINVAIESGNERVLKEIVNKPIKNLAAIPEIIAKVQAK--GIYCIANFIIGFPGETWDE 375

Query: 347 FRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
            R T+   ++ G      +   P   T    + ++
Sbjct: 376 IRETVAFAERCGADYVKIYAAVPLYKTKLYYLAKE 410


>gi|284174002|ref|ZP_06387971.1| hypothetical protein Ssol98_04985 [Sulfolobus solfataricus 98/2]
          Length = 496

 Score = 76.9 bits (188), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 61/310 (19%), Positives = 115/310 (37%), Gaps = 26/310 (8%)

Query: 74  EKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTY 133
           E    K +  LG     K S++KE   L VVV G  A    ++  R     +V+      
Sbjct: 83  ETWTAKFFDELGE----KVSKLKEKFHLKVVVGGAGAWQLEKDPPRW---ADVIFLGHAE 135

Query: 134 YRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC 193
              PE++++   G+ V         +  +L  +    N  RG    + I  GC + C FC
Sbjct: 136 VDFPEVVKKLEQGEEVPRVVRGRYPR--KLDEIPPIINPSRG--GEVQITRGCPRGCWFC 191

Query: 194 VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS 253
            V       IS  L  ++ E    +  G+ +++L+  ++  +  K L+         LY+
Sbjct: 192 SVTPDT--FISFPLDYIMREVEVNMKAGIKDVSLITDDMLLYGAKRLNEVNHDAIVRLYA 249

Query: 254 LSEIKGLVRLRYTTSH--PRDMSDCLIKAHG------DLDVLMPYLHL--PVQSGSDRIL 303
             +  G+  + +      P  +S   +KA        +   + P + L    +   ++ +
Sbjct: 250 ELKRAGVDYINFAHISAAPVKLSPKTVKAMAEIAEWNEEKAVSPVVGLETGSEKIFNKYM 309

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPD--IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
           K          ++ +I    ++  +  I       +G+P ETD D   ++ LV+ I    
Sbjct: 310 KMKAFPWNYTNWKDLIVESTAIMNESYIFPCYTMTIGYPEETDKDVEDSIKLVEYI-IDH 368

Query: 362 AFSFKYSPRL 371
                  P  
Sbjct: 369 EPIAWIFPLP 378


>gi|15899591|ref|NP_344196.1| hypothetical protein SSO2881 [Sulfolobus solfataricus P2]
 gi|13816240|gb|AAK42986.1| Conserved hypothetical protein [Sulfolobus solfataricus P2]
 gi|261601348|gb|ACX90951.1| Radical SAM domain protein [Sulfolobus solfataricus 98/2]
          Length = 502

 Score = 76.9 bits (188), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 61/310 (19%), Positives = 115/310 (37%), Gaps = 26/310 (8%)

Query: 74  EKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTY 133
           E    K +  LG     K S++KE   L VVV G  A    ++  R     +V+      
Sbjct: 89  ETWTAKFFDELGE----KVSKLKEKFHLKVVVGGAGAWQLEKDPPRW---ADVIFLGHAE 141

Query: 134 YRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC 193
              PE++++   G+ V         +  +L  +    N  RG    + I  GC + C FC
Sbjct: 142 VDFPEVVKKLEQGEEVPRVVRGRYPR--KLDEIPPIINPSRG--GEVQITRGCPRGCWFC 197

Query: 194 VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS 253
            V       IS  L  ++ E    +  G+ +++L+  ++  +  K L+         LY+
Sbjct: 198 SVTPDT--FISFPLDYIMREVEVNMKAGIKDVSLITDDMLLYGAKRLNEVNHDAIVRLYA 255

Query: 254 LSEIKGLVRLRYTTSH--PRDMSDCLIKAHG------DLDVLMPYLHL--PVQSGSDRIL 303
             +  G+  + +      P  +S   +KA        +   + P + L    +   ++ +
Sbjct: 256 ELKRAGVDYINFAHISAAPVKLSPKTVKAMAEIAEWNEEKAVSPVVGLETGSEKIFNKYM 315

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPD--IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
           K          ++ +I    ++  +  I       +G+P ETD D   ++ LV+ I    
Sbjct: 316 KMKAFPWNYTNWKDLIVESTAIMNESYIFPCYTMTIGYPEETDKDVEDSIKLVEYI-IDH 374

Query: 362 AFSFKYSPRL 371
                  P  
Sbjct: 375 EPIAWIFPLP 384


>gi|58700253|ref|ZP_00374730.1| MiaB-like tRNA modifying enzyme [Wolbachia endosymbiont of
           Drosophila ananassae]
 gi|58533231|gb|EAL57753.1| MiaB-like tRNA modifying enzyme [Wolbachia endosymbiont of
           Drosophila ananassae]
          Length = 153

 Score = 76.9 bits (188), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 24/112 (21%), Positives = 51/112 (45%), Gaps = 16/112 (14%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V ++GC++N Y+S  +++       E        +++V+++C +  +A  +V   + +I 
Sbjct: 16  VITFGCRLNFYESELIKEALKKAKRE--------NVVVVHSCAVTNEAERQVKQKIRKI- 66

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140
                  K   +  ++V GC  Q +  E+    P V+ V+G Q   +    L
Sbjct: 67  ------YKNDPNKEIIVVGCAVQLDP-EVYSSIPGVSKVLGNQDKLKAENYL 111


>gi|254504023|ref|ZP_05116174.1| radical SAM domain protein [Labrenzia alexandrii DFL-11]
 gi|222440094|gb|EEE46773.1| radical SAM domain protein [Labrenzia alexandrii DFL-11]
          Length = 584

 Score = 76.9 bits (188), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 48/300 (16%), Positives = 103/300 (34%), Gaps = 22/300 (7%)

Query: 86  RIRNLKNSRIKEGGDLLVV---VAGC--VAQAEGEEI-LRRSPIVNVVVGPQTYYRLPEL 139
           R  +L    ++EG    +    V+GC  +     EE+   +   V    G     RL ++
Sbjct: 90  RATDLAREFMREGLPTAIGGFHVSGCISMLDDMPEEMVALQEEGVCYFAGEAEERRLDQV 149

Query: 140 LERARFGKRVVDTDYSVE----DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
              A         ++  +    +      +         G  +   +  GC   C+FC +
Sbjct: 150 FRDAFNDDLKPLYNFMADLPSLEGEPTPILPTKHIQFTAGSHSSFDLGRGCPFQCSFCTI 209

Query: 196 PYTRGI-EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL 254
              +G     RS   +    R     G+    +   N    R       +  F  L+   
Sbjct: 210 INVQGRKSRFRSADDLEQIIRDNYAQGIDRFFITDDNFARNREW-----EPLFDRLIQLR 264

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS-DRILKSMNRRHTAY 313
            E    ++            +  I+        +  + + +++ + D +L +  R++   
Sbjct: 265 EEENFDIKFIIQVDTLCHRIENFIE--KATRAGVNRVFIGLENINPDNLLAAKKRQNKIT 322

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV-DKIGYAQAFSFKYSPRLG 372
           EYRQ++ + R         + +I+GFPG+T +     ++++  ++       F  +P  G
Sbjct: 323 EYRQMLQKWRD--HGATTYAGYIIGFPGDTKEAVLRDVEIIKKELPLDLLEFFFLTPLPG 380


>gi|327192090|gb|EGE59068.1| hypothetical protein RHECNPAF_248002 [Rhizobium etli CNPAF512]
          Length = 591

 Score = 76.9 bits (188), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 45/278 (16%), Positives = 97/278 (34%), Gaps = 20/278 (7%)

Query: 105 VAGCVAQAEGEEI---LRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFE 161
           V+GC++  +G+ +     R   +++  G +   RL  +L  A  G+     ++  +    
Sbjct: 127 VSGCLSMLDGQAVGLDACRDMGISMFAG-EAEGRLDMVLRDAASGELKPLYNFMNDLPGI 185

Query: 162 RLSIVDG----GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI-EISRSLSQVVDEARK 216
             + V         R  G++       GC   C+FC +   +G     RS   V    R 
Sbjct: 186 GGTPVPFLPKDNIQRTLGLSTSFDAGRGCPYQCSFCTIINVQGRKSRFRSADDVEKLVRM 245

Query: 217 LIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDC 276
               G+ +  +   N    +            D L  L E  G+                
Sbjct: 246 NWAQGIHKFFITDDNFARNKDWEA------IFDRLIELKERDGIPLGLMIQVDTL-CHKI 298

Query: 277 LIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA-YEYRQIIDRIRSVRPDIAISSDF 335
                      +  + + +++ +   L +  +      EYR+++   ++    I   + +
Sbjct: 299 PNFIEKSRRAGVTRVFIGLENVNPDNLTAAKKNQNKITEYRKMLLAWKAQ--GIMTLAGY 356

Query: 336 IVGFPGETDDDFRATMDLV-DKIGYAQAFSFKYSPRLG 372
           I+GFP +T +  R  + ++ +++       F  +P  G
Sbjct: 357 ILGFPADTPESIRRDIAIIQEELPLDVIEFFILTPLPG 394


>gi|218509518|ref|ZP_03507396.1| hypothetical protein RetlB5_19459 [Rhizobium etli Brasil 5]
          Length = 500

 Score = 76.9 bits (188), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 45/278 (16%), Positives = 97/278 (34%), Gaps = 20/278 (7%)

Query: 105 VAGCVAQAEGEEI---LRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFE 161
           V+GC++  +G+ +     R   +++  G +   RL  +L  A  G+     ++  +    
Sbjct: 36  VSGCLSMLDGQAVGLDACRDMGISMFAG-EAEGRLDMVLRDAASGELKPLYNFMNDLPGI 94

Query: 162 RLSIVDG----GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI-EISRSLSQVVDEARK 216
             + V         R  G++       GC   C+FC +   +G     RS   V    R 
Sbjct: 95  GGTPVPFLPKDNIQRTLGLSTSFDAGRGCPYQCSFCTIINVQGRKSRFRSADDVEKLVRM 154

Query: 217 LIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDC 276
               G+ +  +   N    +            D L  L E  G+                
Sbjct: 155 NWAQGIHKFFITDDNFARNKDWEA------IFDRLIELKERDGIPLGLMIQVDTL-CHKI 207

Query: 277 LIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA-YEYRQIIDRIRSVRPDIAISSDF 335
                      +  + + +++ +   L +  +      EYR+++   ++    I   + +
Sbjct: 208 PNFIEKSRRAGVTRVFIGLENVNPDNLTAAKKNQNKITEYRKMLLAWKAQ--GIMTLAGY 265

Query: 336 IVGFPGETDDDFRATMDLV-DKIGYAQAFSFKYSPRLG 372
           I+GFP +T +  R  + ++ +++       F  +P  G
Sbjct: 266 ILGFPADTPESIRRDIAIIQEELPLDVIEFFILTPLPG 303


>gi|190891533|ref|YP_001978075.1| hypothetical protein RHECIAT_CH0001931 [Rhizobium etli CIAT 652]
 gi|190696812|gb|ACE90897.1| hypothetical conserved protein [Rhizobium etli CIAT 652]
          Length = 591

 Score = 76.9 bits (188), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 45/278 (16%), Positives = 97/278 (34%), Gaps = 20/278 (7%)

Query: 105 VAGCVAQAEGEEI---LRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFE 161
           V+GC++  +G+ +     R   +++  G +   RL  +L  A  G+     ++  +    
Sbjct: 127 VSGCLSMLDGQAVGLDACRDMGISMFAG-EAEGRLDMVLRDAASGELKPLYNFMNDLPGI 185

Query: 162 RLSIVDG----GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI-EISRSLSQVVDEARK 216
             + V         R  G++       GC   C+FC +   +G     RS   V    R 
Sbjct: 186 GGTPVPFLPKDNIQRTLGLSTSFDAGRGCPYQCSFCTIINVQGRKSRFRSADDVEKLVRM 245

Query: 217 LIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDC 276
               G+ +  +   N    +            D L  L E  G+                
Sbjct: 246 NWAQGIHKFFITDDNFARNKDWEA------IFDRLIELKERDGIPLGLMIQVDTL-CHKI 298

Query: 277 LIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA-YEYRQIIDRIRSVRPDIAISSDF 335
                      +  + + +++ +   L +  +      EYR+++   ++    I   + +
Sbjct: 299 PNFIEKSRRAGVTRVFIGLENVNPDNLTAAKKNQNKITEYRKMLLAWKAQ--GIMTLAGY 356

Query: 336 IVGFPGETDDDFRATMDLV-DKIGYAQAFSFKYSPRLG 372
           I+GFP +T +  R  + ++ +++       F  +P  G
Sbjct: 357 ILGFPADTPESIRRDIAIIQEELPLDVIEFFILTPLPG 394


>gi|121634904|ref|YP_975149.1| lipoyl synthase [Neisseria meningitidis FAM18]
 gi|120866610|emb|CAM10361.1| putative lipoic acid synthetase [Neisseria meningitidis FAM18]
          Length = 356

 Score = 76.9 bits (188), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 42/250 (16%), Positives = 84/250 (33%), Gaps = 23/250 (9%)

Query: 127 VVGPQTYYRLPELLERARFGKRVVDT-----DYSVEDKFERLSIVDGGYNRKRGVTAFLT 181
           VV  Q   + PE +      ++  +      +  +    E  S  + G    +G   F+ 
Sbjct: 57  VVPLQEKLKKPEWIRAKLPSRKFFEIKDILREQKMHTVCEEASCPNIGECFSKGTATFMI 116

Query: 182 IQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD 241
           + + C + C FC V + R   +     +  + A  +    +  + +   +    R    D
Sbjct: 117 MGDICTRRCPFCDVGHGRPNML--DPDEPKNLAESVKAMNLRYVVITSVD----RDDLRD 170

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV-LMPY---LHLPVQS 297
           G    F+D + ++ E     ++       R   D  +K   +    +M +    H  +  
Sbjct: 171 GGAQHFADCIKAIRETSPNTKIEILVPDFRGRLDIALKILAETPPDVMNHNLETHPSLY- 229

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
                 +             ++ R + + P I   S  +VG  GETD+D R  M  +   
Sbjct: 230 ------RKARPGANYQHSLDLLKRYKEMMPHIPTKSGIMVGL-GETDEDVREIMRDMRAH 282

Query: 358 GYAQAFSFKY 367
                   +Y
Sbjct: 283 NIEMITIGQY 292


>gi|323700258|ref|ZP_08112170.1| Radical SAM domain protein [Desulfovibrio sp. ND132]
 gi|323460190|gb|EGB16055.1| Radical SAM domain protein [Desulfovibrio desulfuricans ND132]
          Length = 478

 Score = 76.9 bits (188), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 45/240 (18%), Positives = 79/240 (32%), Gaps = 21/240 (8%)

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRG-----VTAFLTIQEGCDKFCTFCVV-PYTRG 200
           + V D D      ++     +                 +    GC   C FC V  + +G
Sbjct: 179 ESVTDLDVFPFPAYDAFDPAEYKSPEIPPEYQSLPGTHVMTSRGCPFKCEFCSVNRFFKG 238

Query: 201 IEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
               RS   V DE  +L+ + GV  +       +          + T       L     
Sbjct: 239 KWAFRSPGNVADELERLVADLGVRHVYFSDDLFSLN-------PQRTIGICKEILDRRLD 291

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           LV +  T       ++ ++            ++  V+SGS RILK++N+  T  + R+  
Sbjct: 292 LVWMAETRVDCV--NEEMLGWMRKAG--CYRVYYGVESGSPRILKAINKGFTTDQVRRAF 347

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY-AQAFSFKYSPRLGTPGSNM 378
                    +      +VG PGET +    T+ L+ +I           +   GT    +
Sbjct: 348 RMTH--LAGMEPCCFLMVGNPGETPETIDETIALIREIRPGTSPIVGITTILPGTRQYEL 405


>gi|320354470|ref|YP_004195809.1| hypothetical protein Despr_2377 [Desulfobulbus propionicus DSM
           2032]
 gi|320122972|gb|ADW18518.1| Protein of unknown function DUF2344 [Desulfobulbus propionicus DSM
           2032]
          Length = 846

 Score = 76.9 bits (188), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 52/303 (17%), Positives = 107/303 (35%), Gaps = 36/303 (11%)

Query: 123 IVNVVVGPQTYYRLPELLERARFG-----KRVVDTDYSVEDKFERLSIVDGGYNRKRGVT 177
            V     PQ  +     ++  +       KRV+    S       L  V    + + G  
Sbjct: 205 YVPAFFAPQYQHGRLTRIDALQPQYPLVRKRVLPRMGSAPYLHRPLVPVVNPVHDRLG-- 262

Query: 178 AFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWR 236
             + I  GC + C FC    T      R+L ++++ A + I + G  E+ LL  +     
Sbjct: 263 --VEIARGCTRGCRFCQAGMTYRPVRERTLEEIMELANQGIAHSGFEELALLSLST---- 316

Query: 237 GKGLDGEKCTFSDLLYSLSE--IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP 294
                G+    ++L+ +L +      V +   +     ++  +++    +        + 
Sbjct: 317 -----GDFSCLAELMGALMDRFADDFVSVSMPSMRVGTLTPEIMEQIKRVRK--TGFTVA 369

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
            ++G+DR+ + +N+  +  +         ++   + I   F+VG P ET+DD    + L 
Sbjct: 370 PEAGTDRLREVINKGISEQDLLATCRDAFALGWKL-IKLYFMVGLPTETEDDVDGIIALA 428

Query: 355 DKIGY-----------AQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQV 403
            K                     + P+  TP      Q+      +R+  L++ L  Q  
Sbjct: 429 KKARAQVGQGKGRPVQVNLGVATFVPKPHTP-FQWEGQLSLEESKQRINRLKQLLPRQGY 487

Query: 404 SFN 406
              
Sbjct: 488 KLK 490


>gi|194336141|ref|YP_002017935.1| Radical SAM domain protein [Pelodictyon phaeoclathratiforme BU-1]
 gi|194308618|gb|ACF43318.1| Radical SAM domain protein [Pelodictyon phaeoclathratiforme BU-1]
          Length = 474

 Score = 76.9 bits (188), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 51/285 (17%), Positives = 87/285 (30%), Gaps = 33/285 (11%)

Query: 99  GDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVED 158
             + VV+ G       E+        + +V  +      E+ E    G   +  +Y VE 
Sbjct: 114 RGIKVVLGGPYVTIFPEQCR---DHADALVIGEADDIWREVQEDLLRGS--LKAEYRVE- 167

Query: 159 KFERLSIVDGGYNRKRGVTAF-----LTIQEGCDKFCTFCVVPYTRG-IEISRSLSQVVD 212
            F  LSI          + ++     +    GC   C FC V    G     RS+  V+ 
Sbjct: 168 SFPDLSIERTVSKSALDIKSYFTTNVVQTTRGCPYSCDFCNVHVMNGHRLRHRSIPAVLR 227

Query: 213 EARKLIDNGVCEITLLGQNVNAWRGK----GLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
           E    +         L   +NA          + E    S +  + + +    RL    +
Sbjct: 228 EVETFLKEDKRIFFFLDDTINADETYAEQLFRELEPFRISWVGQATTALGEKPRL--LDA 285

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
             R     L+     LD    + H    + S+R +             + I  IR     
Sbjct: 286 FARSGCGALLVGIESLDDGSNHAHKKFHNPSNRQV-------------ECIKNIRKA--G 330

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
           I +   FI G   ++ +        +++ G          P  GT
Sbjct: 331 ICVYGSFIYGLDEDSLELPAKLEAFIEETGIDVPGINLLRPIPGT 375


>gi|330993745|ref|ZP_08317679.1| Putative methyltransferase [Gluconacetobacter sp. SXCC-1]
 gi|329759319|gb|EGG75829.1| Putative methyltransferase [Gluconacetobacter sp. SXCC-1]
          Length = 446

 Score = 76.9 bits (188), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 52/297 (17%), Positives = 100/297 (33%), Gaps = 24/297 (8%)

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            L   R    +       + V++ G       +E       V V    +       +LE 
Sbjct: 75  TLHSTRAYDIAAAFRRRGVKVIMGGPHVFFYADEAAEHCDAVGV---GEAEPIWRTMLED 131

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTI----QEGCDKFCTFCVVP-Y 197
           A   +       +   + + L          +    F T       GC   C FC    Y
Sbjct: 132 AAADRLEKIYRAAPLKELDDLPPPRYDLLDLKKFGPFRTFAVQSSRGCPFVCDFCSERFY 191

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257
             G    R + Q+V E  ++ + G             +      G+K    +L+  L  +
Sbjct: 192 LGGRYRWRPVDQMVGELERIKNRGSHFF---------FGESNFGGKKSRAMELMEGL--V 240

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY-EYR 316
              +R     S    +    +       V+  ++++ ++S  + +L+ M +       Y 
Sbjct: 241 PLKIRWSTLWSSNLCLDTGFLDLARQSGVM--HVNIGIESIDEEMLQGMKKGWNKASRYG 298

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
           ++ D +R    DI+ S +FI G+  E  D + AT+  ++      A+    +P  GT
Sbjct: 299 EMFDNLRRR--DISYSLNFIFGYDEEHPDVYEATLSFLEAHKVPAAYFNILTPTRGT 353


>gi|254479410|ref|ZP_05092742.1| radical SAM domain protein [Carboxydibrachium pacificum DSM 12653]
 gi|214034655|gb|EEB75397.1| radical SAM domain protein [Carboxydibrachium pacificum DSM 12653]
          Length = 564

 Score = 76.5 bits (187), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 57/307 (18%), Positives = 115/307 (37%), Gaps = 26/307 (8%)

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLP--ELLE 141
           +    NL  +  K   ++++V+ G  A  + E +L +  +  VV+G          E LE
Sbjct: 68  IEIALNLAENVKKILPNVVMVLGGPEASYDVENLLSKGFVDYVVIGEGEIAFKELLEALE 127

Query: 142 RARFGKRVVDTDYSVEDK--------FERLSIVDGGYNRKRGVTA---FLTIQEGCDKFC 190
             +  K V    Y VE++        +  L  V  GY+ +  ++    +     GC   C
Sbjct: 128 GKKDLKEVPGIGYKVEEEIVIQPQKYYVNLDEVPIGYDEEEDLSDKLVYYETSRGCPFKC 187

Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDL 250
            +C+      +    SL +V  + +   +  V  + L+ ++ NA         +    ++
Sbjct: 188 AYCL-SSIDNVLRYESLEKVEKDLKWFANKNVKILKLVDRSFNA--------NRKRAREI 238

Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
           L  +  I+G +       +P  +++  I    DL        + VQ+ +   L+ ++R  
Sbjct: 239 LSIMKRIEGEMVFHCEV-NPELVNEEFISELEDL-KGRIQFEVGVQTTNKVTLRKISRTT 296

Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370
                 + I+ ++     I +  D I G P ++   F    D V  +   +         
Sbjct: 297 AVEMALKGIELLKKA--GIKLHVDLIAGLPEDSLKTFSKAFDDVYNLKPEEIQLGFLKIL 354

Query: 371 LGTPGSN 377
            GTP + 
Sbjct: 355 KGTPLAK 361


>gi|241204435|ref|YP_002975531.1| Radical SAM domain protein [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|240858325|gb|ACS55992.1| Radical SAM domain protein [Rhizobium leguminosarum bv. trifolii
           WSM1325]
          Length = 589

 Score = 76.5 bits (187), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 45/278 (16%), Positives = 97/278 (34%), Gaps = 20/278 (7%)

Query: 105 VAGCVAQAEGEEI---LRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFE 161
           V+GC++  +G+ +     R   +++  G +   RL  +L  A  G+     ++  +    
Sbjct: 127 VSGCLSMLDGKAVGLDACRDMGISMFAG-EAEGRLDMVLRDAAAGELKPLYNFMNDLPGI 185

Query: 162 RLSIVDG----GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI-EISRSLSQVVDEARK 216
             + V         R  G++       GC   C+FC +   +G     RS   V    R 
Sbjct: 186 GGTPVPFLPKDNIQRTLGLSTSFDAGRGCPYQCSFCTIINVQGRKSRFRSADDVEKLVRM 245

Query: 217 LIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDC 276
               G+ +  +   N    +            D L  L E  G+                
Sbjct: 246 NWAQGIHKFFITDDNFARNKDWEA------IFDRLIELKERDGIPLGLMIQVDTL-CHKI 298

Query: 277 LIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA-YEYRQIIDRIRSVRPDIAISSDF 335
                      +  + + +++ +   L +  +      EYR+++   ++    I   + +
Sbjct: 299 PNFIEKSRRAGVTRVFIGLENVNPDNLTAAKKNQNKITEYRKMLLAWKAQ--GIMTLAGY 356

Query: 336 IVGFPGETDDDFRATMDLV-DKIGYAQAFSFKYSPRLG 372
           I+GFP +T +  R  + ++ +++       F  +P  G
Sbjct: 357 ILGFPADTPESIRRDIAIIQEELPLDVIEFFILTPLPG 394


>gi|39997572|ref|NP_953523.1| TPR domain/radical SAM/B12 binding domain protein [Geobacter
           sulfurreducens PCA]
 gi|39984463|gb|AAR35850.1| TPR domain/radical SAM/B12 binding domain protein [Geobacter
           sulfurreducens PCA]
          Length = 864

 Score = 76.5 bits (187), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 51/324 (15%), Positives = 93/324 (28%), Gaps = 33/324 (10%)

Query: 62  ADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRS 121
           AD+  +        A       +G +  L            + V G  A     E LR  
Sbjct: 382 ADVYGV-------SAYNSNRRGMGALCALIRQY---HPHAHITVGGPFATTLPLETLRYY 431

Query: 122 PIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYN---------- 171
             ++ VV  +      ELL+  R  +  V    +     + +++                
Sbjct: 432 RAIDTVVVGEGEETFMELLDHIRSHRPAVGIPGTAWRNGDEVALGPVRPRIGDLDTLASH 491

Query: 172 RKRGVTAFLTIQEGCDKFCTFCVVPYTRGI-EISRSLSQVVDEARKLIDNGVCEITLLGQ 230
                +  +    GC   C+FC  P   G      S    +D  RK +        ++  
Sbjct: 492 FDYYSSNIVMTSRGCPSKCSFCGNPVLWGRKIRFYSTDYCIDMFRKALARLPVPYLMIAD 551

Query: 231 NVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY 290
           +      +            L     I G       +   R  +      H         
Sbjct: 552 DTFTANQQ----------RTLNMCDAIIGNKLDFLWSCSTRVDAMEDKVLHRMRRAGCQE 601

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
           + + V+SGS  IL+ +++  T      +    +     + +    +V   GET D  +A+
Sbjct: 602 IMIGVESGSPEILERIHKGITPEMVLTVTRAAKKY--GMLVHYYMMVINRGETPDTLQAS 659

Query: 351 MDLVDKIGYAQAFSFKYSPRLGTP 374
           +DL+                 GT 
Sbjct: 660 IDLIKAGRPNSYDLTPLMFLPGTE 683


>gi|18976413|ref|NP_577770.1| putative oxidative cyclase [Pyrococcus furiosus DSM 3638]
 gi|18891943|gb|AAL80165.1| putative oxidative cyclase [Pyrococcus furiosus DSM 3638]
          Length = 580

 Score = 76.5 bits (187), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 45/270 (16%), Positives = 88/270 (32%), Gaps = 39/270 (14%)

Query: 180 LTIQEGCDK-----FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA 234
           +  Q GC K      C+FC  P    +  +R    V  E     + G+    +  Q+   
Sbjct: 203 IETQRGCPKAMGIGGCSFCTEPVRYKVVENRPQEYVAQEVETFYNMGIRHFRIGRQSCIF 262

Query: 235 WRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLD--------V 286
                 +G           + ++   VRL         + +       +           
Sbjct: 263 SYKARPNGRVPIPK--PEEVEKLFKAVRLAAPNVKTLHVDNANPAVIANYPEESRRIAKA 320

Query: 287 LMPYLH------LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV--------RPDIAIS 332
           ++ Y          +++   ++ +  N   T  E  + +  I  V         P +   
Sbjct: 321 IIEYGTPGNVVAFGLETADPKVARINNLNATPEETYEAVKIINEVGGRRGYNGLPWLLPG 380

Query: 333 SDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR-----LGTPGSNMLEQVDENVK 387
            + I G PGET   +  T + + KI        + + R      GTP  NM ++V    K
Sbjct: 381 INIIFGLPGETKRTYELTYEFLKKILDDGLMVRRINIRQVVVFPGTPLWNMRDKV----K 436

Query: 388 AERLLCLQKKLR-EQQVSFNDACVGQIIEV 416
            E+   L +  R + +   +   + +++ V
Sbjct: 437 TEKHKALIEHYRHKIRHEIDLPMLKRVVPV 466


>gi|296314421|ref|ZP_06864362.1| lipoyl synthase [Neisseria polysaccharea ATCC 43768]
 gi|296838857|gb|EFH22795.1| lipoyl synthase [Neisseria polysaccharea ATCC 43768]
          Length = 327

 Score = 76.5 bits (187), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 43/250 (17%), Positives = 84/250 (33%), Gaps = 23/250 (9%)

Query: 127 VVGPQTYYRLPELLERARFGKRVVDT-----DYSVEDKFERLSIVDGGYNRKRGVTAFLT 181
           VV  Q   + PE +      ++  +      +  +    E  S  + G    +G   F+ 
Sbjct: 28  VVPLQEKLKKPEWIRAKLPSRKFFEIKDILREQKMHTVCEEASCPNIGECFSKGTATFMI 87

Query: 182 IQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD 241
           + + C + C FC V + R   +     +  + A  +    +  + +   +    R    D
Sbjct: 88  MGDICTRRCPFCDVGHGRPNML--DPDEPKNLAESVKAMNLRYVVITSVD----RDDLRD 141

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV-LMPY---LHLPVQS 297
           G    F+D + ++ E     ++       R   D  +K   +    +M +    H  +  
Sbjct: 142 GGAQHFADCIKAIRETSPNTKIEILVPDFRGRLDIALKILAETPPDVMNHNLETHPSLY- 200

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
                 K             ++ R + + P I   S  +VG  GETD+D R  M  +   
Sbjct: 201 ------KKARPGANYQHSLDLLKRYKEMMPHIPTKSGIMVGL-GETDEDVREIMRDMRAH 253

Query: 358 GYAQAFSFKY 367
                   +Y
Sbjct: 254 NIEMITIGQY 263


>gi|257468746|ref|ZP_05632840.1| Radical SAM domain protein [Fusobacterium ulcerans ATCC 49185]
 gi|317063000|ref|ZP_07927485.1| radical SAM domain-containing protein [Fusobacterium ulcerans ATCC
           49185]
 gi|313688676|gb|EFS25511.1| radical SAM domain-containing protein [Fusobacterium ulcerans ATCC
           49185]
          Length = 443

 Score = 76.5 bits (187), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 56/331 (16%), Positives = 111/331 (33%), Gaps = 38/331 (11%)

Query: 54  ERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAE 113
           E ++  D AD +V+    +    A++ Y      R            + V++ G      
Sbjct: 50  ELIDYEDKADAVVI---PVETYTAKRSYEIAENFRR---------RGIKVILGGYHVTLI 97

Query: 114 GEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRK 173
            EE        + ++         E++E  R     +   Y  E  +         +  K
Sbjct: 98  PEE---AEKYADCIITGNAERVWNEVIEDCRCS--TLKKRYKGETTYLHTQPDKSIFEGK 152

Query: 174 RGV-TAFLTIQEGCDKFCTFCVVPYTRGIEIS-RSLSQVVDEARKLIDNGVCEITLLGQN 231
           + V  + +    GC   C FC +          R    +V + +   D+      L+  N
Sbjct: 153 KYVPVSLVETGRGCCNSCEFCAIAGYYKFHYYPRPHEDIVRDIK---DSKHKYHFLVDDN 209

Query: 232 VNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL 291
           + A        ++    +L   L  +K     + T +  +D    L+ A          +
Sbjct: 210 LVA--------DRKNAMELFRKLEPLKIKWAGQGTLNMAKD--KDLLTAMKKSG--CEII 257

Query: 292 HLPVQSGSDRILKSMNRRHTA--YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
            +  +S     LK MN+       E  +++ RI +    I I + F+ G+  +T +  + 
Sbjct: 258 LIGFESLDTDNLKQMNKAVNIMEAERDELVQRIHNA--GIGIYATFVFGYDNDTQNTIKK 315

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
            ++   K  +  A      P  GT   + L+
Sbjct: 316 AVEFSKKHNFYTAAFNHLLPFPGTKLYDRLK 346


>gi|254303175|ref|ZP_04970533.1| possible iron-sulfur (Fe-S) dehydrogenase [Fusobacterium nucleatum
           subsp. polymorphum ATCC 10953]
 gi|148323367|gb|EDK88617.1| possible iron-sulfur (Fe-S) dehydrogenase [Fusobacterium nucleatum
           subsp. polymorphum ATCC 10953]
          Length = 442

 Score = 76.5 bits (187), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 59/317 (18%), Positives = 108/317 (34%), Gaps = 36/317 (11%)

Query: 61  DADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRR 120
           +AD+IV+ +       +++ Y++    R            + VV+ G       EE  + 
Sbjct: 60  EADIIVMTS---ITGTSQRCYAYADYFRK---------RGITVVLGGVHPSLMPEEASQ- 106

Query: 121 SPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGV--TA 178
               +VV+        P++L   + G+         E   E   I      +K     TA
Sbjct: 107 --HADVVMIGFAEQTFPQMLLDFKNGRLKRMYIQDKEFNLENKVIPRRELLQKDKYITTA 164

Query: 179 FLTIQEGCDKFCTFCVVPYTRGIEIS-RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG 237
            + +  GC   CTFC  P   G +I  R + +V+ E     +     I     N+ A   
Sbjct: 165 TVEVIRGCSLPCTFCAYPTAFGRKIYKRPIKEVLSEIEMFSE---KIILFPDVNLIA--- 218

Query: 238 KGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQS 297
                ++     L   +  +K       T+S   D +  +IK   D       L +  +S
Sbjct: 219 -----DREYAMRLFKEMKSLKKYWMGLVTSSVGIDEN--MIKTFADSG--CKGLLIGFES 269

Query: 298 GSDRILKSMNRRHT-AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
            +      +N+      +Y +++ ++      I +   F  G   E    F  T++ V K
Sbjct: 270 ITQESQSYINKGINKVADYAELMKKLHDY--GILVQGCFAFGSDEEDTSVFERTVEAVVK 327

Query: 357 IGYAQAFSFKYSPRLGT 373
                      +P   T
Sbjct: 328 AKIDLPRYSILTPFPKT 344


>gi|86741581|ref|YP_481981.1| radical SAM family protein [Frankia sp. CcI3]
 gi|86568443|gb|ABD12252.1| Radical SAM [Frankia sp. CcI3]
          Length = 613

 Score = 76.5 bits (187), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 48/242 (19%), Positives = 92/242 (38%), Gaps = 31/242 (12%)

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAF-------LTIQEGCDKFCTFCVVPYTRGI---EI 203
           + +    +RL  VD  +       A        +    GC   C+FC    +        
Sbjct: 183 HHLSPDVDRLPFVDRRFLVGDPYQAPDGRVEANMVGARGCPYDCSFCGAAVSANPDITIR 242

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTF---SDLLYSLSEIKGL 260
           +R+ + ++ E   L   G         ++     + +      F         + +  G 
Sbjct: 243 TRTPAGIIAEMEVLHATGGVTAFRFVDDLFLGYERFIRQCMEAFTAARLGDRFVWDATGR 302

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
           + + +       + + L+         +  + L V+SGS+R+LK M +R T    R ++ 
Sbjct: 303 INILHR------VDNALLDVLAA--NGLREVALGVESGSERLLKYMGKRITPDMTRSVVR 354

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI--------GYAQAFSFKYSPRLG 372
           R+      I++   FI+GFP ET ++  AT+  V ++        G  +A  F++ P  G
Sbjct: 355 RLNER--GISVKGYFILGFPTETREELAATVRHVRELWEVADGQPGNFRASVFEFRPYPG 412

Query: 373 TP 374
           TP
Sbjct: 413 TP 414


>gi|296242243|ref|YP_003649730.1| radical SAM domain-containing protein [Thermosphaera aggregans DSM
           11486]
 gi|296094827|gb|ADG90778.1| Radical SAM domain protein [Thermosphaera aggregans DSM 11486]
          Length = 515

 Score = 76.5 bits (187), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 61/323 (18%), Positives = 113/323 (34%), Gaps = 42/323 (13%)

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK----FCTFCVVP 196
           E+A   +   D   + E   +   IV    N  R +   +    GC +     C+FC+ P
Sbjct: 153 EKADPRRLREDYSTADEAFLKGSKIVRQHPNFGRNLIVEIETFRGCPRWITGGCSFCIEP 212

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256
              G  ++R+   ++ E  +L   GV  + +  Q      G      +        +L +
Sbjct: 213 R-YGRPVTRTPESIIREIGELYSLGVRHVRIGKQPDILVYGSRQIESEEFPKPSPETLEK 271

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLD-------VLMPYLHLP-------VQSGSDRI 302
           +   +R          + +                  ++   H P       V+S  +++
Sbjct: 272 VFKGIRNTAPGLRTIHIDNVNPGTIAKHPEESLKALKIILNYHTPGDVAALGVESFDEKV 331

Query: 303 LKSMNRRHTAYEYRQIIDRIRSV--------RPDIAISSDFIVGFPGETDDDFRATMDLV 354
           +KS N +    E  + +  I  V         P +    + + G PGET + FR   + +
Sbjct: 332 IKSNNLKAAPDEVMEALRLINRVGRVKGWNGLPHLLPGINLLYGLPGETRETFRINEEFL 391

Query: 355 DKIGYA-----QAFSFKYSPRLGTPGSNMLEQVDENV-KAERLLCLQKKLREQQVSFNDA 408
           +KI        +    K S    TP      QV  N+ K E+L  + +        F+  
Sbjct: 392 NKIMQEGLLVRRLNIRKVSILENTPLCLRSRQVYANLAKHEQLYRVHRV--RVMRLFDRE 449

Query: 409 CVGQIIE--VL-----IEKHGKE 424
            + +++   VL     +EK GK 
Sbjct: 450 MLKKVVPEGVLLPYLYVEKSGKR 472


>gi|119356047|ref|YP_910691.1| radical SAM domain-containing protein [Chlorobium phaeobacteroides
           DSM 266]
 gi|119353396|gb|ABL64267.1| Radical SAM domain protein [Chlorobium phaeobacteroides DSM 266]
          Length = 468

 Score = 76.5 bits (187), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 53/304 (17%), Positives = 99/304 (32%), Gaps = 20/304 (6%)

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             +   R  + +         V++ G       EE        + +V  +       +LE
Sbjct: 78  RTIDATRAYEIADEFRRKGKKVILGGLHVSFNPEEARS---HADSIVSGEAENLWATVLE 134

Query: 142 RARFG--KRVVDT-DYSVEDKFERLSIVDGGYNRKRGV-----TAFLTIQEGCDKFCTFC 193
            A  G  K   D+ D+ +  K   L         KRG      +  + I  GC   C+FC
Sbjct: 135 DASSGQLKPAYDSKDFPLVTKIVPLDYERIARASKRGKVDGSKSIPIYITRGCPYECSFC 194

Query: 194 VVPYTRGIE-ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLY 252
           V P   G     ++   +V +                +       + L   K    + L 
Sbjct: 195 VTPNFTGKLYRYQNPEDLVRQIETAKKVFFKAKGKSSKPWFMLCDENLGINKKKLWENLA 254

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH-- 310
            L E      + Y+     +  +        +D     + +  +S     L++ N+ H  
Sbjct: 255 LLKE----CNINYSVFFSMNFLEDKETVRRLVDSGCNMVLVGFESIKQSTLEAYNKGHVN 310

Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370
           +A ++  +I+  RS    + I  +F+V    +T +D    ++ V K           +P 
Sbjct: 311 SAEKFASVIEECRSA--GLNIQGNFLVNPALDTFEDMDDLVEFVGKNHVFMPIFQIITPY 368

Query: 371 LGTP 374
            GT 
Sbjct: 369 PGTK 372


>gi|298506510|gb|ADI85233.1| cobalamin-binding radical SAM domain iron-sulfur cluster-binding
           oxidoreductase with TPR domain [Geobacter sulfurreducens
           KN400]
          Length = 864

 Score = 76.5 bits (187), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 51/324 (15%), Positives = 93/324 (28%), Gaps = 33/324 (10%)

Query: 62  ADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRS 121
           AD+  +        A       +G +  L            + V G  A     E LR  
Sbjct: 382 ADVYGV-------SAYNSNRRGMGALCALIRQY---HPHAHITVGGPFATTLPLETLRYY 431

Query: 122 PIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYN---------- 171
             ++ VV  +      ELL+  R  +  V    +     + +++                
Sbjct: 432 RAIDTVVVGEGEETFMELLDHIRSHRPAVGIPGTAWRNGDEVALGPVRPRIGDLDTLASH 491

Query: 172 RKRGVTAFLTIQEGCDKFCTFCVVPYTRGI-EISRSLSQVVDEARKLIDNGVCEITLLGQ 230
                +  +    GC   C+FC  P   G      S    +D  RK +        ++  
Sbjct: 492 FDYYSSNIVMTSRGCPSKCSFCGNPVLWGRKIRFYSTDYCIDMFRKALARLPVPYLMIAD 551

Query: 231 NVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY 290
           +      +            L     I G       +   R  +      H         
Sbjct: 552 DTFTANQQ----------RTLNMCDAIIGNKLDFLWSCSTRVDAMEDKVLHRMRRAGCQE 601

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
           + + V+SGS  IL+ +++  T      +    +     + +    +V   GET D  +A+
Sbjct: 602 IMIGVESGSPEILERIHKGITPEMVLTVTRAAKKY--GMLVHYYMMVINRGETPDTLQAS 659

Query: 351 MDLVDKIGYAQAFSFKYSPRLGTP 374
           +DL+                 GT 
Sbjct: 660 IDLIKAGRPNSYDLTPLMFLPGTE 683


>gi|261401351|ref|ZP_05987476.1| lipoyl synthase [Neisseria lactamica ATCC 23970]
 gi|254671727|emb|CBA09531.1| lipoic acid synthetase [Neisseria meningitidis alpha153]
 gi|269208643|gb|EEZ75098.1| lipoyl synthase [Neisseria lactamica ATCC 23970]
 gi|309378480|emb|CBX22905.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 327

 Score = 76.5 bits (187), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 43/250 (17%), Positives = 84/250 (33%), Gaps = 23/250 (9%)

Query: 127 VVGPQTYYRLPELLERARFGKRVVDT-----DYSVEDKFERLSIVDGGYNRKRGVTAFLT 181
           VV  Q   + PE +      ++  +      +  +    E  S  + G    +G   F+ 
Sbjct: 28  VVPLQEKLKKPEWIRAKLPSRKFFEIKDILREQKMHTVCEEASCPNIGECFSKGTATFMI 87

Query: 182 IQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD 241
           + + C + C FC V + R   +     +  + A  +    +  + +   +    R    D
Sbjct: 88  MGDICTRRCPFCDVGHGRPNML--DPDEPKNLAESVKAMNLRYVVITSVD----RDDLRD 141

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV-LMPY---LHLPVQS 297
           G    F+D + ++ E     ++       R   D  +K   +    +M +    H  +  
Sbjct: 142 GGAQHFADCIKAIRETSPNTKIEILVPDFRGRLDIALKILAETPPDVMNHNLETHPSLY- 200

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
                 K             ++ R + + P I   S  +VG  GETD+D R  M  +   
Sbjct: 201 ------KKARPGANYQHSLDLLKRYKEMMPHIPTKSGIMVGL-GETDEDVREIMRDMRAH 253

Query: 358 GYAQAFSFKY 367
                   +Y
Sbjct: 254 NIEMITIGQY 263


>gi|15921762|ref|NP_377431.1| hypothetical protein ST1470 [Sulfolobus tokodaii str. 7]
 gi|15622549|dbj|BAB66540.1| 489aa long conserved hypothetical protein [Sulfolobus tokodaii str.
           7]
          Length = 489

 Score = 76.5 bits (187), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 50/291 (17%), Positives = 101/291 (34%), Gaps = 19/291 (6%)

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAE-GEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            + N    + ++   + ++  G         E +     V+ +V  +    + +L +   
Sbjct: 114 ELVNRPEIKKEKERGMKILAGGPSVWQWLWREDMIEKVGVDTLVDGEGEKAVVKLAQMIL 173

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G+ +    Y   D  E  S+ +    +   V   + I  GC + C FC V         
Sbjct: 174 DGEPLPKYVYIGAD--EAPSVDEIPEIKGASVNGLIEIMRGCARSCRFCSVTL--RPTRY 229

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG---LV 261
             L ++  E    + NGV    +   +V  +   G+         L   + +        
Sbjct: 230 YPLEKIEKELMVNVRNGVKHGVVHSDDVLFYGAIGIYPRPEPLIKLHKLVKKYYKTIAWS 289

Query: 262 RLRYTTSHPRDMSDCLI---KAHGDLDVLMPY--LHLPVQSGSDRILKSMN----RRHTA 312
                     +    LI         D    Y  + + +++GS R+ K +       +  
Sbjct: 290 HASLAAIRYSEEKYGLISKLMEIVFEDGNQSYLGVEVGIETGSARLAKEIMPAKSAPYKV 349

Query: 313 YEYRQIIDRIRSVRPD--IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
            EY + +++   +  +  I  +   IVG P ET+DD   T++LVD +   +
Sbjct: 350 EEYPETVEQAFKIMHENKIIPAGTMIVGLPEETEDDVYKTIELVDNLRPYR 400


>gi|242399824|ref|YP_002995249.1| Fe-S oxidoreductase [Thermococcus sibiricus MM 739]
 gi|242266218|gb|ACS90900.1| Fe-S oxidoreductase [Thermococcus sibiricus MM 739]
          Length = 527

 Score = 76.5 bits (187), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 56/317 (17%), Positives = 100/317 (31%), Gaps = 54/317 (17%)

Query: 92  NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK---- 147
               + G + ++V  G  A      ILR    ++ VV  +      E++ER + GK    
Sbjct: 86  RKMKERGINPIIVFGGHHATFTYPLILR--EGIDFVVIGEGEQTFREIIERLKEGKDIRS 143

Query: 148 ------------------RVVDTDYSVEDKFERLSI--VDGGYNRKRGVTAFLTIQEGCD 187
                              +V+ D      ++ L           K    A +    GC 
Sbjct: 144 VRGIAYRDGQKVNVSYREPIVNLDNLPIPAYDLLDPDVYKASIVGKNVRIASIETSRGCP 203

Query: 188 KFCTFCVVPYTRGI-EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT 246
             C FC      G     +S  +VVDE + + + G   +  +  N               
Sbjct: 204 YNCEFCSASAMWGHAWRFKSNERVVDELKFVKNLGYNWVFFVDDNFVVPY---------K 254

Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL--------MPYLHLPVQSG 298
           + + +  L+ I     +    +    M             L        +    + ++SG
Sbjct: 255 YEERIELLNSI-----IEEGLNEMNYMIQIRADIIAKHPELAEKLAEAGVKIAFMGIESG 309

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD--- 355
           S+ +LK+M +     +  + I  +     +I      I+G P E+  D +AT   V    
Sbjct: 310 SEGVLKAMRKGLKKNDTLKAIQLLSEQ--EIITYGGVIIGAPYESRKDRKATYKFVQMLG 367

Query: 356 KIGYAQAFSFKYSPRLG 372
             G        Y+P  G
Sbjct: 368 DHGLDVVQISIYTPLPG 384


>gi|265766983|ref|ZP_06094812.1| coproporphyrinogen III oxidase [Bacteroides sp. 2_1_16]
 gi|263253360|gb|EEZ24836.1| coproporphyrinogen III oxidase [Bacteroides sp. 2_1_16]
          Length = 377

 Score = 76.5 bits (187), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 46/234 (19%), Positives = 82/234 (35%), Gaps = 22/234 (9%)

Query: 186 CDKFCTFCVV-PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR---GKGLD 241
           C   C +C     TR     R +  +  E        +    L G+ +       G    
Sbjct: 11  CKTRCIYCDFYSTTRSEWKGRYIEALCKELE------MRYTYLKGKPIETLYFGGGTPSQ 64

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPR--DMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
            ++  F  +  ++  I G+      T      D+    ++   +L      + + +Q+  
Sbjct: 65  LDEKDFRKVFDTVRRIYGMENCHEITLEANPDDLCPEYLQMLSELP--FNRISMGIQTFD 122

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIA-ISSDFIVGFPGETDDDFRATMDLVDKIG 358
           D  LK + RRH A +  + ++  R+       IS D I G PGET + +   +     + 
Sbjct: 123 DTTLKLLKRRHNAAQAIRAVELCRA--HGFRNISIDLIYGLPGETTERWEKDLQQAIALD 180

Query: 359 YAQAFSFKYSPRLGTPGSNML-----EQVDENVKAERLLCLQKKLREQQVSFND 407
                ++      GTP   ML     E+VDE+        L  +L E      +
Sbjct: 181 VEHISAYHLIYEEGTPIYKMLQKHQVEEVDEDSSVRFFTLLIDRLCEAGYEHYE 234


>gi|281412691|ref|YP_003346770.1| Radical SAM domain protein [Thermotoga naphthophila RKU-10]
 gi|281373794|gb|ADA67356.1| Radical SAM domain protein [Thermotoga naphthophila RKU-10]
          Length = 441

 Score = 76.5 bits (187), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 55/361 (15%), Positives = 115/361 (31%), Gaps = 50/361 (13%)

Query: 43  RMEDMFFSQGYERV---NSMDDADLIVLNTCHIRE------KAAEKVYSFLGRIRNLKNS 93
            +      +G+       +++  DL   N    R+       A    +  + RI     +
Sbjct: 28  YISSSLKRKGHSVALIDMNVEKFDLERFN---FRDYDVVGISADTVRFPVVERIAEKAKA 84

Query: 94  RIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR----- 148
           +     ++ VV+ G    A   EIL++     VV+G        +L+E     ++     
Sbjct: 85  Q-----NVTVVMGGPHTTACYHEILQKGLCDYVVLGEGER-AFSDLVESIASSEKYPLIP 138

Query: 149 ---------VVDTDYSVEDKFERLSIVDGGYNRKRGVT------AFLTIQEGCDKFCTFC 193
                    V+       +  + L   D                  L    GC   C FC
Sbjct: 139 GVAYMKDGEVIALPSRFLENLDDLPFPDREKVHLYRTKFAGERATSLITSRGCPFNCEFC 198

Query: 194 VVPYTRGIEIS-RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLY 252
                 G  I  RS+  V+DE + L   G   +     N            K   +    
Sbjct: 199 SASQFMGRRIRWRSIENVIDELKILKKLGYGSVIFFDDNFTIN-------PKRVVNLCEE 251

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
            + +        ++ +      + +++A          L +  +S +D +L+   +   +
Sbjct: 252 MMRKDLRFKWWAFSRADELLGREDMVEAM--SKAGCRMLFIGFESANDEVLEEYGKNLKS 309

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
                +++ ++  +  I + + F++G   +T      T+ L  K+  +       +P  G
Sbjct: 310 DIAFDVMNLLKKYK--IDVFASFVIGALKDTRKTIEKTVKLAKKLKASIVQFSILTPYPG 367

Query: 373 T 373
           T
Sbjct: 368 T 368


>gi|213609869|ref|ZP_03369695.1| hypothetical protein SentesTyp_04800 [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
          Length = 83

 Score = 76.5 bits (187), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 39/83 (46%), Gaps = 4/83 (4%)

Query: 390 RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPWLQS-VVLNSK-NH 445
           R     +  ++         VG+ I V++++  +E   G+ +  +P +   V LN + N 
Sbjct: 1   RWNRFMQLQQQISAERLQEKVGREILVIVDEVDEEGAIGRSMADAPEIDGAVYLNGETNV 60

Query: 446 NIGDIIKVRITDVKISTLYGELV 468
             GDI++V++ +     L+G  V
Sbjct: 61  KPGDIVRVKVENADEYDLWGSRV 83


>gi|73670614|ref|YP_306629.1| Fe-S oxidoreductase [Methanosarcina barkeri str. Fusaro]
 gi|72397776|gb|AAZ72049.1| Fe-S oxidoreductase [Methanosarcina barkeri str. Fusaro]
          Length = 459

 Score = 76.5 bits (187), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 48/309 (15%), Positives = 98/309 (31%), Gaps = 35/309 (11%)

Query: 99  GDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV-----DTD 153
              +V + G        E L   P V++VV  +      EL   A    ++         
Sbjct: 98  PTCIVCLGGPHVTVNYHEALN-YPFVDIVVRGEGEITFLELCRAAAKENKLPLNIEGTAV 156

Query: 154 YSVEDKFE-------------RLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR- 199
            S ++                              +   +    GC   C FC  P    
Sbjct: 157 RSKDEIITLPRRARIINLDALPFPARHLMPLHLYNIPGTILTSRGCPSNCGFCAGPVVME 216

Query: 200 GIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258
              I+RS   V+ E +  ID   +     +   +     + +D       D L  +    
Sbjct: 217 RKYIARSAKNVIAEVQMCIDKFRITSFYFVDDTMTHDTQRLMD-----ICDGLRQIKIPP 271

Query: 259 GLVR-LRYTTSHPRD-MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
            + R L++T     D ++  +++           +   ++SGS ++L  + ++ T  +  
Sbjct: 272 SITRNLKWTCESRADAVTPEILQDMRSAG--CTTIQFGMESGSQQLLDQLGKKITLKQIE 329

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD---KIGYAQAFSFKYSPRLGT 373
             +   R     I+     +   P ET+   + T + +    +IG  +      +   GT
Sbjct: 330 NAVIWSREA--GISPVLSMVFPHPNETEKTLQETFNFIRRLYEIGAEKIIPSLLTLFPGT 387

Query: 374 PGSNMLEQV 382
              +  E++
Sbjct: 388 RFMDQREKL 396


>gi|307111827|gb|EFN60061.1| hypothetical protein CHLNCDRAFT_133327 [Chlorella variabilis]
          Length = 227

 Score = 76.5 bits (187), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 40/164 (24%), Positives = 56/164 (34%), Gaps = 32/164 (19%)

Query: 8   IGVAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVL 67
           +  A   S    Q     R  + S GC  N  D                     AD IV+
Sbjct: 27  VRAAATPSAPEAQEKKGLRVSMVSLGCPKNTVDGEASL---------------QADAIVI 71

Query: 68  NTCHIREKAAEKVY--------------SFLGRIRNLK---NSRIKEGGDLLVVVAGCVA 110
           NTC   E A ++                  +GRIR          ++G    VVV GC+A
Sbjct: 72  NTCGFVEDAKDESIEVQRRHAWWRQQQARLIGRIRRTIIEAARMKEDGRVRRVVVTGCLA 131

Query: 111 QAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDY 154
           Q   +E+  + P  ++VVG + Y  L   L         +D D 
Sbjct: 132 QRYSQELAEQLPEADLVVGFEKYGSLSASLRTILDAPPDIDMDE 175


>gi|282162697|ref|YP_003355082.1| hypothetical protein MCP_0027 [Methanocella paludicola SANAE]
 gi|282155011|dbj|BAI60099.1| conserved hypothetical protein [Methanocella paludicola SANAE]
          Length = 440

 Score = 76.5 bits (187), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 44/197 (22%), Positives = 76/197 (38%), Gaps = 25/197 (12%)

Query: 185 GCDKFCTFC-VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
           GC   C +C V     G    R++  VV+E + L   G+  +TL     N   G      
Sbjct: 195 GCPYRCAYCNVTTAFGGELRPRNVGDVVEEIKALKAQGIRIVTLTDACFNVPSGYA---- 250

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPR---DMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300
                ++L ++  I   VR+   T+         D L++       +  Y  L  ++ S 
Sbjct: 251 ----KEVLNAI--IDSGVRVYLNTTFVPVAGHFDDELMELFKRAGGI--YASLGAETFSR 302

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
           ++LKS ++  T  +       +   R  I      + G PGE     R ++D++  + YA
Sbjct: 303 KMLKSYHKPFTLDDVLACAGLL--GRHHIPFMVQALFGGPGEDASTLRESLDMLRHVPYA 360

Query: 361 QAFSFKYSP----RLGT 373
           +   F Y+       GT
Sbjct: 361 E---FTYTMGIRLLPGT 374


>gi|39998504|ref|NP_954455.1| radical SAM domain/B12 binding domain-containing protein [Geobacter
           sulfurreducens PCA]
 gi|39985451|gb|AAR36805.1| radical SAM domain protein/B12 binding domain protein [Geobacter
           sulfurreducens PCA]
          Length = 472

 Score = 76.5 bits (187), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 50/312 (16%), Positives = 98/312 (31%), Gaps = 40/312 (12%)

Query: 90  LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVN-VVVGPQTYYRLPELLERARFGKR 148
           L     +   D+ V+  G  A + G  +L R P ++ +V+G              R  ++
Sbjct: 88  LAEGLKELLPDIPVIFGGAHACSVGVSLLDRFPAIDYLVLGEGEQTLYELAAASFRNVEK 147

Query: 149 VV--------------------DTDYSVEDKFERLSIVDGGYNRK-----RGVTAFLTIQ 183
           +                     D D      + RL      Y        +     +   
Sbjct: 148 IPGVGYRRDGVGTLSAARELIADLDTLPFPAYHRLPDFPRRYTLPLFSYPKAPNTSVISS 207

Query: 184 EGCDKFCTFCVVPYTRGIEISRSLSQVVDE-ARKLIDNGVCEITLLGQNVNAWRGKGLDG 242
            GC   C++C            S   +V+  A    D G+  +        A RG+    
Sbjct: 208 RGCPYQCSYCDRSVFSRGFRFNSSEYIVEHLAYLNRDFGIRHVFFYDDLFTADRGR---- 263

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
                      L E + L       +    +   L+            ++  ++SG   +
Sbjct: 264 -----VARFCQLKEARRLPVTYNCIARLEHVDAELLALLKRSG--CWQVNFGIESGDPEV 316

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           +K   + +   E +  +  +R     + +   F++G PGE+ +  R T+D    +   + 
Sbjct: 317 IKKHRKYYGLDEVQTKLAMVRRA--GMRVKGLFMLGLPGESAESIRRTIDYALMLPLDEI 374

Query: 363 FSFKYSPRLGTP 374
              K++P  G P
Sbjct: 375 NVTKFTPFPGAP 386


>gi|94972360|ref|YP_595580.1| Fe-S oxidoreductase [Lawsonia intracellularis PHE/MN1-00]
 gi|94731897|emb|CAJ53940.1| Fe-S oxidoreductase [Lawsonia intracellularis PHE/MN1-00]
          Length = 487

 Score = 76.5 bits (187), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 42/318 (13%), Positives = 92/318 (28%), Gaps = 40/318 (12%)

Query: 92  NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL---LERARFGKR 148
           +   +      V++ G    A  E+ L  S  ++ V   +  + + ++   LE+      
Sbjct: 93  DEIKRRFPHCFVILVGTHPSALPEDTLNLSKSIDAVTIGEYDFTIRDIAHALEQKLSLHN 152

Query: 149 VVDTDYSVEDKF------------ERLSIVDGGYNRKRGVTAF-----------LTIQEG 185
           V    +   +++            + L  V   Y +      +           +    G
Sbjct: 153 VPGLVFRHNEEYIKTAEREKIEDLDSLPFVTSVYKKYLNYKNYFFAAAKYPMVMIITGRG 212

Query: 186 CDKFCTFCVVPYTR--GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
           C   C FC+ P          RS   +V E +  I     ++  +G              
Sbjct: 213 CPFKCFFCLYPQVFHSRRYRPRSPENIVAEFK-YIKENFPDLKEIGIE-----DDCFTVN 266

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
                 +   L  I+  + + +  +   D+    +            + +  +SG    L
Sbjct: 267 TARVRKICQLL--IEEKLNMTWYCNVRGDVDYETLFLMKKAG--CRLVTVGFESGVQSAL 322

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
             M++      Y Q     +     I +    + G PG++ +  +       KI      
Sbjct: 323 DQMHKNEKIKNYYQFAKDAQKA--GIMVHGCIMAGTPGDSLEVQKENYRFALKINCDSMQ 380

Query: 364 SFKYSPRLGTPGSNMLEQ 381
            +      GT      ++
Sbjct: 381 FYPLYVYPGTEAYTWAKE 398


>gi|46204653|ref|ZP_00049675.2| COG1032: Fe-S oxidoreductase [Magnetospirillum magnetotacticum
           MS-1]
          Length = 264

 Score = 76.5 bits (187), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 44/182 (24%), Positives = 67/182 (36%), Gaps = 16/182 (8%)

Query: 178 AFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG 237
           A +    GC   CTFC VP     E S   + V DE    +  G  E        N    
Sbjct: 77  ATILSSRGCPYRCTFCDVPIKSYRERS--PAAVCDEIEACLAMGYKEFRFYDDLFNINER 134

Query: 238 KGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQS 297
           K +        +L      I    R R          + L++A       +  +   V++
Sbjct: 135 KVI----AFCDELDRRGLRITWDFRGRVNAVSR----ESLVRARASG---LRMISFGVET 183

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGE-TDDDFRATMDLVDK 356
           GSD  L+ + +  T  + RQ     R +   I   +D+I+G P E T DD R  +D +  
Sbjct: 184 GSDDGLRILKKATTTAKIRQAFAWCREL--GILTVADYIIGQPFEKTPDDIRRNIDFLVA 241

Query: 357 IG 358
           + 
Sbjct: 242 LE 243


>gi|322434216|ref|YP_004216428.1| Radical SAM domain protein [Acidobacterium sp. MP5ACTX9]
 gi|321161943|gb|ADW67648.1| Radical SAM domain protein [Acidobacterium sp. MP5ACTX9]
          Length = 500

 Score = 76.5 bits (187), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 62/317 (19%), Positives = 108/317 (34%), Gaps = 57/317 (17%)

Query: 95  IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ----------------------- 131
            +    + VV  G       E  L R P V++VV  Q                       
Sbjct: 85  KRTNPSVSVVFGGWHPTLCPESTL-REPYVDIVVRGQGELTIVELAVALAEKKPLDFITG 143

Query: 132 -TYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190
            ++ +   L+E   F +RV   D   +  F+            +   A+ T   GC   C
Sbjct: 144 ISWKKNGRLIEN--FERRVQPVDTFAQPAFDMTDFDAYEKKSGKRELAYAT-SIGCPYAC 200

Query: 191 TFCV-VPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFS 248
            +C  +   +    + +   VV E   L+    +  + LL  N                 
Sbjct: 201 NYCTDMVVYKRRFNAYAAEHVVAELTGLVKRYRITHVALLDSNFP--------------V 246

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV------LMPYLHLPVQSGSDRI 302
           DL  +++  +G+V      +     S   I      +V       + Y+    +S S  +
Sbjct: 247 DLKRAIAIARGIVDSGVKFAWTFQASTDFICRMSQEEVQLLADSGVRYMGFGTESTSKAV 306

Query: 303 LKSMNRRHTAYEYRQIIDRIRSV-RPDIAISSDFIVGFPGETDDDFRATMDLVDKIG--Y 359
           LK MN+RH      ++ +  R      I ++ + I+G+PGET+ D   T   +  IG  +
Sbjct: 307 LKMMNKRHQR--VDEMYETARKAELAGIRVNFNLILGYPGETEADRLETFRTMSDIGRHF 364

Query: 360 AQAFSFK--YSPRLGTP 374
                    ++P  G P
Sbjct: 365 KNVRFSPNIFTPYPGIP 381


>gi|327311700|ref|YP_004338597.1| Radical SAM domain-containing protein [Thermoproteus uzoniensis
           768-20]
 gi|326948179|gb|AEA13285.1| Radical SAM domain protein [Thermoproteus uzoniensis 768-20]
          Length = 528

 Score = 76.5 bits (187), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 63/379 (16%), Positives = 127/379 (33%), Gaps = 52/379 (13%)

Query: 11  AHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC 70
           A + + I+D   VP+  ++K          S ++  M     Y  VN          +T 
Sbjct: 77  AGINAAIIDPDYVPR--YLK----------SAKIL-MLSHHDYFGVNPPS-------STW 116

Query: 71  HIREKAAEKVYSFLGRIRNLKNSRI---KEGGDLLVVVAGCVAQAE--GEEILRRSPIVN 125
            +             +        I   K    L V+V G  A       +++ R  I  
Sbjct: 117 GVILGKETLNAYLFRKFMERIEKDIWEAKRASGLKVMVGGPAAWQWLYYPDLVERWGIDT 176

Query: 126 VVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEG 185
           +  G      + E+++    GK      Y      E  S+ +    +   +   + I  G
Sbjct: 177 IFDGEGEKLIV-EVVKNTLEGKTP--PRYIYVGASEAPSVDEISTIKGASINGLVEIGRG 233

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V           LS++ +E +     GV +  L    V  +   G++    
Sbjct: 234 CPRGCAFCSVTL--RPLRWYPLSKIEEELKVNARAGVVDGILHSDEVPLYGSNGVELNPT 291

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLI------------KAHGDLDVLMPYLHL 293
              +    L ++      +   SH   ++  L                 D         +
Sbjct: 292 ALIE----LHKLAKKYYRKVGWSHTTFVAVLLAEKKYGKLMTKIADIIKDEHQDWWGAEI 347

Query: 294 PVQSGSDRILKSMN----RRHTAYEYRQIIDRIRSVRPDIA--ISSDFIVGFPGETDDDF 347
            +++GS R+ K +       +   ++  I++   ++  ++    +   IVG PGE  DD 
Sbjct: 348 GLETGSIRVAKQIMPGKAAPYKIEQWHDIVEESMAIMHELKLIPAVTLIVGLPGEQPDDV 407

Query: 348 RATMDLVDKIGYAQAFSFK 366
             T++L++++   ++    
Sbjct: 408 IQTIELIERLKPYRSLIVP 426


>gi|253702145|ref|YP_003023334.1| radical SAM protein [Geobacter sp. M21]
 gi|251776995|gb|ACT19576.1| Radical SAM domain protein [Geobacter sp. M21]
          Length = 448

 Score = 76.5 bits (187), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 55/285 (19%), Positives = 97/285 (34%), Gaps = 20/285 (7%)

Query: 99  GDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSV-E 157
             + V++ G    A  +E  R     + VV  +       LL+ A+  KR +   Y    
Sbjct: 85  RGMQVLLGGIHVTALPDEAAR---HADAVVLGEAEEIWKGLLDDAQ--KRALKPVYQGGF 139

Query: 158 DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP-YTRGIEISRSLSQVVDEARK 216
            + + L            V  +     GC   CTFC V  +  G    R + +VV E   
Sbjct: 140 PELKGLPRPVTNLWNTNYVYGYFQTSRGCPHRCTFCSVHEFFGGKVRVRPIDEVVSEI-- 197

Query: 217 LIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDC 276
              +       +  NV    G  +D     + ++  +LS   G            D    
Sbjct: 198 -AASKRRLFWGIDDNV---WGVDMDYTIELYREMGKNLS---GKSWFGSGDLVSVDHPRS 250

Query: 277 LIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR-PDIAISSDF 335
                      +  + +  +S +   L+    R T  + RQ  D IR +R   I +    
Sbjct: 251 AELLKNARSAGLTAVLVGWESNNIGSLEEY--RATNKQGRQRRDAIRKIRDAGIEVMLFM 308

Query: 336 IVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++G   +  +D+   + L D++  + A     +P  GT    + E
Sbjct: 309 MIGGRKDRVEDYEGILKLCDELKVS-AHPVMTTPFPGTQLYRIYE 352


>gi|78189285|ref|YP_379623.1| Elongator protein 3/MiaB/NifB [Chlorobium chlorochromatii CaD3]
 gi|78171484|gb|ABB28580.1| Elongator protein 3/MiaB/NifB [Chlorobium chlorochromatii CaD3]
          Length = 472

 Score = 76.5 bits (187), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 50/282 (17%), Positives = 86/282 (30%), Gaps = 27/282 (9%)

Query: 99  GDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVED 158
             + VV+ G       E    R     +V+G +      ++L+  R     +  +Y V  
Sbjct: 112 RGIKVVLGGPYVTIFPE--CCREHGDTLVIG-EADDIWRDVLKDLRNN--TLQPEYRVT- 165

Query: 159 KFERLSIVDGGYNRKRGVTAF-----LTIQEGCDKFCTFCVVPYTRG-IEISRSLSQVVD 212
            F  LSI          +  +     +    GC   C FC V    G     R+++ VV 
Sbjct: 166 TFPDLSIARPVEKSALDIKRYFTTNVVQTTRGCPYSCDFCNVHVMNGHRLRHRAIADVVR 225

Query: 213 EARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
           +  + +         L   +NA            F +L     +  G        +    
Sbjct: 226 DVERFLLEDKRIFFFLDDTINA----DEHYALKLFQELEQFHIKWVG------QATTTLG 275

Query: 273 MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT-AYEYRQIIDRIRSVRPDIAI 331
               L++           L + ++S SD    +  + H  A      I  IR     I +
Sbjct: 276 EKPRLLETFARSG--CGALLVGIESLSDGSNHAHQKFHNPAARQLTSIRAIRQA--GICV 331

Query: 332 SSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
              FI G   +T +        +++ G          P  GT
Sbjct: 332 YGSFIYGLDDDTLELPAQLEAFIEESGVDVPGINLLRPIPGT 373


>gi|15920235|ref|NP_375904.1| magnesium-protoporphyrin IX monomethyl ester oxidative cyclase 66
           kd subunit [Sulfolobus tokodaii str. 7]
 gi|15621017|dbj|BAB65013.1| 532aa long hypothetical magnesium-protoporphyrin ix monomethyl
           ester oxidative cyclase 66 kd subunit [Sulfolobus
           tokodaii str. 7]
          Length = 532

 Score = 76.5 bits (187), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 43/203 (21%), Positives = 74/203 (36%), Gaps = 15/203 (7%)

Query: 176 VTAFLTIQEGCDKFCTFC-VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA 234
             A L    GC   C FC V P       ++S ++++ E  K  + G   I  +      
Sbjct: 197 YVACLETARGCPYACDFCSVTPTWGNKWRNKSNNRILKEISKAKELGYNWIFFVDDIFIV 256

Query: 235 WRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT-SHPRDMSDCLIKAHGDLDVLMPYLHL 293
           W        +   + L   + E K  +       +     +  LIK     D  +    L
Sbjct: 257 W------PNRSQRAALFRKMIETKNTINFIAQMRADVTARNPELIKL--ASDAGLRIAFL 308

Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
            ++SGS  +LK M++     +    +  +      + +    ++G P ET  D RAT+ L
Sbjct: 309 GIESGSQEVLKKMHKGLAVSDSINAVKTLHEN--GVIVLVGLMIGAPYETIKDIRATVKL 366

Query: 354 ---VDKIGYAQAFSFKYSPRLGT 373
              +  +G        Y+P  GT
Sbjct: 367 SRKLADVGADAVQFSIYTPLPGT 389


>gi|319638335|ref|ZP_07993098.1| lipoyl synthase [Neisseria mucosa C102]
 gi|317400608|gb|EFV81266.1| lipoyl synthase [Neisseria mucosa C102]
          Length = 327

 Score = 76.5 bits (187), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 43/247 (17%), Positives = 83/247 (33%), Gaps = 17/247 (6%)

Query: 127 VVGPQTYYRLPELLERARFGKRVVDT-----DYSVEDKFERLSIVDGGYNRKRGVTAFLT 181
           VV  +   + PE +     GK+  +      +  +    E  S  +      +G   F+ 
Sbjct: 28  VVPLEQKLKKPEWIRAKLPGKKFFEIKNILREQKMHTVCEEASCPNISECFTKGTATFMI 87

Query: 182 IQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD 241
           + + C + C FC V + R   +     +    A  +    +  + +   +    R    D
Sbjct: 88  MGDICTRRCPFCDVGHGRPNML--DPDEPKHLAESVKSMNLRYVVITSVD----RDDLRD 141

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV-LMPYLHLPVQSGSD 300
           G    F+D + ++ E     ++       R   D  +K   +    +M +          
Sbjct: 142 GGAQHFADCIKAIRETSPNTKIEILVPDFRGRLDIALKILAETPPDVMNHNLETH----P 197

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
           R+ K             ++ R + + P I   S  +VG  GETD+D R  M  +      
Sbjct: 198 RLYKKARPGANYQHSLDLLRRYKEMMPHIPTKSGIMVGL-GETDEDVREIMRDMRANNIE 256

Query: 361 QAFSFKY 367
                +Y
Sbjct: 257 MITIGQY 263


>gi|189425254|ref|YP_001952431.1| radical SAM protein [Geobacter lovleyi SZ]
 gi|189421513|gb|ACD95911.1| Radical SAM domain protein [Geobacter lovleyi SZ]
          Length = 460

 Score = 76.5 bits (187), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 60/277 (21%), Positives = 99/277 (35%), Gaps = 30/277 (10%)

Query: 97  EGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVD----- 151
             G   V+V G        EIL        +VG     +LP LL+R   G    D     
Sbjct: 92  CKGRATVIVGGSGFSLMPLEILAACGADIGLVGEGEQ-QLPLLLDRLAQGIDPADLPGVV 150

Query: 152 ----TDYSVEDKFERL-----SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG-I 201
                D+       R+      + D     K G  A L  + GC   C++C  P   G  
Sbjct: 151 LPGKIDFIPPQTVSRIGSPDRELFDVARYLKEGGMANLQTKRGCPFGCSYCTYPLLEGQQ 210

Query: 202 EISRSLSQVVDEARKLI-DNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
             +R +++++ E R L+ D+GV  +  +    N            +F + L +     GL
Sbjct: 211 MRTRPVAEIIAEIRSLVNDHGVDYLYFVDDIFNY---------PVSFCEQLCTAMIDAGL 261

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
                   +P  ++  L+            +     SGS  +L S+ +  T  + R    
Sbjct: 262 QVNWSAFINPDFITPQLLDLMQRAG--CDAIEFGTDSGSPGMLTSLCKSFTLGQVRSASL 319

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
             R     +  +   I G PGET++    T  L+D++
Sbjct: 320 LCREA--GLDFAHYIIFGGPGETEETILDTFQLMDEL 354


>gi|189501263|ref|YP_001960733.1| Radical SAM domain-containing protein [Chlorobium phaeobacteroides
           BS1]
 gi|189496704|gb|ACE05252.1| Radical SAM domain protein [Chlorobium phaeobacteroides BS1]
          Length = 470

 Score = 76.5 bits (187), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 56/337 (16%), Positives = 108/337 (32%), Gaps = 29/337 (8%)

Query: 39  YDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEG 98
            D   +E       +E +   +  DLI +    ++     K ++    +R+        G
Sbjct: 63  VDVEGIEQRICDLRFEELPLEEPWDLIGI---SVQTGMTAKAFNLADTLRSKGFKVALGG 119

Query: 99  GDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVED 158
             + +    C    +  ++L      ++      +  + E L+ A   K     D+  + 
Sbjct: 120 AHVTLFPDSC---RQHADVLVHGEADDI------WADVLEDLKNAALQKDYFPVDFP-DL 169

Query: 159 KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG-IEISRSLSQVVDEARKL 217
              R         R+   T  +    GC   C FC V    G     RS++ VVDE  + 
Sbjct: 170 SRSRPIASRLLDKRRYFTTNIIQTGRGCPYSCDFCTVHVLNGNRHRRRSINDVVDEVIRF 229

Query: 218 IDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCL 277
            ++       +  ++NA     L        +L   L  +      + TT+  +     L
Sbjct: 230 SEHDNRIFFFVDDSINASEDYAL--------ELFERLVPLNITWFGQATTTLGKQ--PRL 279

Query: 278 IKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR-QIIDRIRSVRPDIAISSDFI 336
           ++           L + ++S      +   +         + I  IR     I++   FI
Sbjct: 280 LETFARSG--CQALLVGIESIEPASRERHKKTQNRSSELAEAIINIRKA--GISLYGSFI 335

Query: 337 VGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
            G  G+T +   A +D +              P  GT
Sbjct: 336 YGLDGDTLETPAAILDFIRLTKLDVPGINILRPNPGT 372


>gi|313668328|ref|YP_004048612.1| lipoic acid synthetase [Neisseria lactamica ST-640]
 gi|313005790|emb|CBN87244.1| putative lipoic acid synthetase [Neisseria lactamica 020-06]
          Length = 322

 Score = 76.5 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 43/250 (17%), Positives = 84/250 (33%), Gaps = 23/250 (9%)

Query: 127 VVGPQTYYRLPELLERARFGKRVVDT-----DYSVEDKFERLSIVDGGYNRKRGVTAFLT 181
           VV  Q   + PE +      ++  +      +  +    E  S  + G    +G   F+ 
Sbjct: 28  VVPLQEKLKKPEWIRAKLPSRKFFEIKDILREQKMHTVCEEASCPNIGECFSKGTATFMI 87

Query: 182 IQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD 241
           + + C + C FC V + R   +     +  + A  +    +  + +   +    R    D
Sbjct: 88  MGDICTRRCPFCDVGHGRPNML--DPDEPKNLAESVKAMNLRYVVITSVD----RDDLRD 141

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV-LMPY---LHLPVQS 297
           G    F+D + ++ E     ++       R   D  +K   +    +M +    H  +  
Sbjct: 142 GGAQHFADCIKAIRETSPNTKIEILVPDFRGRLDIALKILAETPPDVMNHNLETHPSLY- 200

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
                 K             ++ R + + P I   S  +VG  GETD+D R  M  +   
Sbjct: 201 ------KKARPGANYQHSLDLLKRYKEMMPHIPTKSGIMVGL-GETDEDVREIMRDMRAH 253

Query: 358 GYAQAFSFKY 367
                   +Y
Sbjct: 254 NIEMITIGQY 263


>gi|218781957|ref|YP_002433275.1| radical SAM domain protein [Desulfatibacillum alkenivorans AK-01]
 gi|218763341|gb|ACL05807.1| Radical SAM domain protein [Desulfatibacillum alkenivorans AK-01]
          Length = 563

 Score = 76.1 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 56/311 (18%), Positives = 95/311 (30%), Gaps = 30/311 (9%)

Query: 80  VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL 139
            +  L     LK        +L +V+ G  A    E  L   P V+  V  +    +  L
Sbjct: 77  RFGALDMAAMLKER----NPNLTIVLGGIGATFLWEHFLTHFPQVDYAVVGEGEEAMASL 132

Query: 140 LERARFGK------------RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCD 187
           ++    G             RV       E K     I       +      L++  GC 
Sbjct: 133 VKCLEIGDSRGIAEIPGVAARVDGAPVLTEQKGYIRDIDALPRPSRFYKFQHLSLSRGCP 192

Query: 188 KFCTFCVVPYTRGI-EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT 246
             CTFC  P   G      S    V +   L  +G     +               +K  
Sbjct: 193 HNCTFCGSPKFWGRTMRFHSADYFVRQLHTLAKSGEKFFYVSDDTFT--------LKKDL 244

Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306
              +   +  I+  + + +      D  D  I  +         +   V+SG +     +
Sbjct: 245 VIRVCKEI--IEAGLDISWNAISRVDRVDEDI-LYWMRKAGCIQISYGVESGCETTRDML 301

Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
           N+  +  +  +  +   + R  I   + FI G  GE  +  +A +DL+D I    A  + 
Sbjct: 302 NKNMSTQDILRAFEL--TTRFGILSRAYFIYGCQGEGPEVLQANLDLMDAIKPLGAVFYI 359

Query: 367 YSPRLGTPGSN 377
                GT    
Sbjct: 360 LDIFPGTRLYE 370


>gi|209963630|ref|YP_002296545.1| magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative
           cyclase [Rhodospirillum centenum SW]
 gi|209957096|gb|ACI97732.1| magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative
           cyclase [Rhodospirillum centenum SW]
          Length = 590

 Score = 76.1 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 54/371 (14%), Positives = 113/371 (30%), Gaps = 61/371 (16%)

Query: 43  RMEDMFFSQGYERVNSMDDADLIVLNTCH-------IREKAAEKVYSFLG---------R 86
            +       GY         D I ++          +R    ++    +G         +
Sbjct: 28  YLAGALKQAGYT--------DFIFVDAMTNNLSEDEVRAIFEKEKPDLVGATSITPSIYK 79

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVV-----------------G 129
              L     +   +++ ++ G  A    +++L  +P V+ +                  G
Sbjct: 80  AERLLQIAKEVNPNIVTILGGIHATFMYQQVLSEAPWVDAIARGEGEAILVNLCRAIEDG 139

Query: 130 PQTYYRLP-ELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGV-------TAFLT 181
                R   + +     GK V           + ++         + +        A   
Sbjct: 140 TWATDRKSIKGIAFIEDGKIVATPAEPPIADVDTINPDWSILEWDKYIYIPMGVRVAIPN 199

Query: 182 IQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLI-DNGVCEITLLGQNVNAWRGKGL 240
           +  GC   C+FC           R   +VVDE   L+ D+ V    L  +     R K +
Sbjct: 200 MARGCPFTCSFCSQWKFWRNYRVRDPKKVVDEIETLVRDHKVGFFILADEEPTIHRKKFI 259

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300
                   ++      +   +  R T     +    L+  +    ++  ++ L  ++ + 
Sbjct: 260 QF----CEEMERRKLPVLWGINTRVTDILRDE---ELLPLYRRAGLV--HVSLGTEAAAQ 310

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
             L   N+  T  + ++ I+ ++     I   + FIVG   ET +    T  +    G  
Sbjct: 311 LKLDLFNKETTIAQNKKAIELLQKN--GIVAEAQFIVGLENETAETLEQTYQMAMDWGPD 368

Query: 361 QAFSFKYSPRL 371
            A    Y+P  
Sbjct: 369 MANWAMYTPWP 379


>gi|14590045|ref|NP_142109.1| hypothetical protein PH0094 [Pyrococcus horikoshii OT3]
 gi|3256480|dbj|BAA29163.1| 580aa long hypothetical protein [Pyrococcus horikoshii OT3]
          Length = 580

 Score = 76.1 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 48/280 (17%), Positives = 91/280 (32%), Gaps = 43/280 (15%)

Query: 174 RGVTAFLTI----QEGCDK-----FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCE 224
            G   F+ I    Q GC K      C+FC  P    +  +R    V  E +   + G+  
Sbjct: 193 PGYPEFVLIEIETQRGCPKAMGIGGCSFCTEPVRYRVVENRPQEYVAQEVKVFYNLGIRH 252

Query: 225 ITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL 284
             +  Q+         +G     +     + ++   VRL         + +       + 
Sbjct: 253 FRIGRQSCIFSYMAKPNGRVPIPN--PEEVEKLFKAVRLAAPNVKTLHVDNANPAVIANY 310

Query: 285 DVLMPYL--------------HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV----- 325
                 +                 +++   ++ +  N   T  E  + +  I  V     
Sbjct: 311 PEESKRIAKAIIRYGTPGNVVAFGLETADPKVARINNLNATPEETYEAVKIINEVGGKRG 370

Query: 326 ---RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR-----LGTPGSN 377
               P +    + I G PGET   +  T + + KI        + + R      GTP  N
Sbjct: 371 YNGLPWLLPGINIIFGLPGETKRTYELTYEFLKKILDDGLMVRRINIRQVVVFPGTPLWN 430

Query: 378 MLEQVDENVKAERLLCLQKKLR-EQQVSFNDACVGQIIEV 416
           M ++V    K E+   L +  R + +   +   + +I+ V
Sbjct: 431 MRDKV----KTEKHKKLIEHYRHKIRHEIDLPMLKRIVPV 466


>gi|322371130|ref|ZP_08045682.1| radical HhH [Haladaptatus paucihalophilus DX253]
 gi|320549120|gb|EFW90782.1| radical HhH [Haladaptatus paucihalophilus DX253]
          Length = 575

 Score = 76.1 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 57/385 (14%), Positives = 119/385 (30%), Gaps = 50/385 (12%)

Query: 125 NVVVGPQTYYRLPELLERARFG--KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTI 182
           + V          +L++    G   R+ D +           +V+   N    +   +  
Sbjct: 135 DFVAKGDVEAAAFDLVDSGLEGYNNRMRDNEEVDRWAEAGAFVVEQHPNHPDYLICEMET 194

Query: 183 QEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQ-NVNAWRGKGLD 241
             GC   C+FC  P        R    VV E   L + GV    L  Q ++ A+ G G  
Sbjct: 195 SRGCPYRCSFCTEPLYGNPSF-REPQSVVAEVDGLSNRGVRHFRLGRQADILAYGGDGEK 253

Query: 242 GEKCTFSDLLYSLSEIKG-------LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP 294
                  +L   + E+               T     + S   I+   + +         
Sbjct: 254 PNPDALRELYGGIREVAPDLGTLHLDNMNPITIVEWPEPSREGIRVIAEHNTPGDTAAFG 313

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRS----------------------VRPDIAIS 332
           ++S    + +  N   TA E  + +  +                          P +   
Sbjct: 314 LESADPVVQEQNNLNVTAEECFEAVKIVNEEAGWRPGESPDDAPTHGPDAANRLPKLLPG 373

Query: 333 SDFIVGFPGETDDDFRATMDLVDKIGYA------QAFSFKYSPRLGTPGSNMLEQVDENV 386
            + + G  GE  + F    + + ++ Y       +    +     GT  +++   + ++ 
Sbjct: 374 INLLHGLKGERKETFDHNREFLQRV-YDEGLMLRRVNIRQVMAFSGTEMNSVGTDIADD- 431

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIE---VL--IEKHGKEKGKLVGR-SPWLQSVVL 440
             +RL   ++   E +   ++  + ++     VL  +     + G+  GR       +V 
Sbjct: 432 -HKRL--FKQYKSEVREKIDNPMLQRVAPPGTVLPNVHLEYHKDGRTFGRQLGTYPLLVG 488

Query: 441 NSKNHNIGDIIKVRITDVKISTLYG 465
                 +G  I V + D    ++ G
Sbjct: 489 IPGERELGRTIDVAVVDHGYRSVTG 513


>gi|300854593|ref|YP_003779577.1| hypothetical protein CLJU_c14070 [Clostridium ljungdahlii DSM
           13528]
 gi|300434708|gb|ADK14475.1| putative protein with a radical SAM domain [Clostridium ljungdahlii
           DSM 13528]
          Length = 448

 Score = 76.1 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 60/338 (17%), Positives = 115/338 (34%), Gaps = 47/338 (13%)

Query: 47  MFFSQGYERVNSMDDADLI-VLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVV 105
           +  ++  E+++  +  DL+ +  T  +  +A E    F  R   +    I    D   V+
Sbjct: 43  IIENENVEKIDFDEPVDLVAITVTVDVMNRAVEISKKFQNRNVTVIAGGIHITADPESVI 102

Query: 106 AGC------VAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDK 159
                    +A+    +IL                +          GK +V  DYS  D 
Sbjct: 103 NSFDAISVGMAERVWVKILEDKEN--------NSLKKIYYDMENIAGKEIVSPDYSSIDN 154

Query: 160 FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC--VVPYTRGIEISRSLSQVVDEARKL 217
            + L             T  ++   GC   C FC           I+R +  V+ +   L
Sbjct: 155 KKYL------------YTNIISTSRGCPFECDFCYNSCKSVLKTYINRPIDDVIRDINAL 202

Query: 218 IDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCL 277
                  I  +  N          G       LL  +  +K L      TS+  DM+  L
Sbjct: 203 ---KTRHIMFIDDNFI--------GNPKWTKKLLKEIKPLK-LKWNAAVTSNIVDMT-EL 249

Query: 278 IKAHGDLDVLMPYLHLPVQSGSDRILKSMNR-RHTAYEYRQIIDRIRSVRPDIAISSDFI 336
           +            L +  +S + + + S+++ +++   Y ++++ I      I I++ F+
Sbjct: 250 LDEMKAAG--CQSLFIGFESINSKSIDSVHKVQNSVKRYEKLVEEIHKR--GIMINASFV 305

Query: 337 VGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
            G   +    F+ T++ + K       S   +P  GT 
Sbjct: 306 FGLDEDDVSVFKNTLEWIVKNKIETVTSHILTPYPGTK 343


>gi|328952774|ref|YP_004370108.1| Radical SAM domain protein [Desulfobacca acetoxidans DSM 11109]
 gi|328453098|gb|AEB08927.1| Radical SAM domain protein [Desulfobacca acetoxidans DSM 11109]
          Length = 517

 Score = 76.1 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 55/324 (16%), Positives = 114/324 (35%), Gaps = 59/324 (18%)

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA--- 143
           +++L          + +++ G  A      ILR  P ++ V   +    LP+ L+     
Sbjct: 95  VKDLSRRLKVAAPKIPLILGGAFATMNSVRILRDCPDLDCVGVGEGEELLPDYLQNLDDP 154

Query: 144 ---------RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAF--------------- 179
                      GK V +    +    ++    D        + +                
Sbjct: 155 GSVAGLVWRHGGKIVRNVPRPLLRNLDQFPYPDRASLPIDYIESLPLDVPAVLSLDKFCT 214

Query: 180 LTIQEGCDKFCTFCVVP-YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK 238
           +    GC   C +C +P  +RG    RS + V+ E + L D+G   I L   +       
Sbjct: 215 MQTSRGCPYSCIYCDIPALSRGKWRYRSSAHVLGEMQLLNDSGYRSIYLTDDH------- 267

Query: 239 GLDGEKCTFSDLLYSLSEI-----KGLVRLRYTTSHPRD-MSDCLIKAHGDLDVLMPYLH 292
                   F      + EI     +  +  R+      D ++   +      +    +L 
Sbjct: 268 --------FLLNRKRIGEICCGFLERRLEFRWGCEGRVDAVAVDQLSLMKKAN--CNFLA 317

Query: 293 LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI-AISSDFIVGFPGETDDDFRATM 351
             V++G+ ++L  +N++ T  + +  +    + R  I  +   F+VG PGE+  D  A+ 
Sbjct: 318 FGVEAGTQKVLDRLNKKQTLLQVKHAVSE--AKRQGIERVHGFFLVGSPGESKKDMMASF 375

Query: 352 DL-----VDKIGYAQAFSFKYSPR 370
                  +D  G+ +  +++ +P 
Sbjct: 376 RFATRLQIDTFGFNRLCTYRGTPL 399


>gi|206889883|ref|YP_002248022.1| radical SAM domain protein [Thermodesulfovibrio yellowstonii DSM
           11347]
 gi|206741821|gb|ACI20878.1| radical SAM domain protein [Thermodesulfovibrio yellowstonii DSM
           11347]
          Length = 805

 Score = 76.1 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 56/358 (15%), Positives = 125/358 (34%), Gaps = 64/358 (17%)

Query: 110 AQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGG 169
           +Q   EE+L R   +     P    +      R RF K + + ++        + IV   
Sbjct: 177 SQGRKEELLNRISQIEGFYVPYMGKKTV----RRRFIKNINNAEFPTSPILPYMKIVHDR 232

Query: 170 YNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLL 228
            +        + +  GC   C FC           R+  ++++ A+K ++  G  EI+LL
Sbjct: 233 VS--------IEVSRGCPSGCRFCQAGMIYRPLRIRTPEKILEIAKKSVECTGYEEISLL 284

Query: 229 GQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL--VRLRYTTSHPRDMSDCLIKAHGDLDV 286
                        G      +L+  L++      V +   +     +S  L++       
Sbjct: 285 S---------FSIGHYPYLMELIDILNKNFSNQGVAISLPSIRADKVSKELLQKIKLTRK 335

Query: 287 LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDD 346
                 +  ++ ++R+   +N+  +  +  +    +      + I   F++G P ETD+D
Sbjct: 336 --TGFTIAPEAATERLRCVINKNISNEDIEKACALLFEEGW-LGIKLYFMIGLPTETDED 392

Query: 347 FRATMDLVDK-IGYAQAFS----------FKYSPRLGTPGSNMLEQVDENVKAERLLCLQ 395
               + L  K I  A+ ++            + P+  TP    L Q+  +   ++L    
Sbjct: 393 IEEIVTLARKIIKLARVYTKKFVDINVTVSPFIPKPHTP-FQWLAQIPFDEIKKKLDF-- 449

Query: 396 KKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV--LNSKNHNIGDII 451
                 + +F+ + +                   G +P +  +   +   +  +G++I
Sbjct: 450 -----IRNAFHKSRI----------------HYKGHNPNMSLLEAAIARGDEKVGEVI 486


>gi|255065923|ref|ZP_05317778.1| lipoyl synthase [Neisseria sicca ATCC 29256]
 gi|255049834|gb|EET45298.1| lipoyl synthase [Neisseria sicca ATCC 29256]
          Length = 328

 Score = 76.1 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 42/250 (16%), Positives = 84/250 (33%), Gaps = 23/250 (9%)

Query: 127 VVGPQTYYRLPELLERARFGKRVVDT-----DYSVEDKFERLSIVDGGYNRKRGVTAFLT 181
           VV  Q   + PE +      ++  +      +  +    E  S  + G    +G   F+ 
Sbjct: 28  VVPLQEKLKKPEWIRAKLPSRKFFEIKDILREQKMHTVCEEASCPNIGECFSKGTATFMI 87

Query: 182 IQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD 241
           + + C + C FC V + R   +     +  + A  +    +  + +   +    R    D
Sbjct: 88  MGDICTRRCPFCDVGHGRPNML--DPDEPKNLAESVKAMNLRYVVITSVD----RDDLRD 141

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV-LMPY---LHLPVQS 297
           G    F+D + ++ +     ++       R   D  +K   +    +M +    H  +  
Sbjct: 142 GGAQHFADCIKAIRQTSPNTKIEILVPDFRGRLDIALKILAETPPDVMNHNLETHPSLY- 200

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
                 K             ++ R + + P I   S  +VG  GETD+D R  M  +   
Sbjct: 201 ------KKARPGANYQHSLDLLRRYKEMMPHIPTKSGIMVGL-GETDEDVREIMRDMRAH 253

Query: 358 GYAQAFSFKY 367
                   +Y
Sbjct: 254 NIEMITIGQY 263


>gi|254489540|ref|ZP_05102743.1| radical SAM domain protein [Roseobacter sp. GAI101]
 gi|214042047|gb|EEB82687.1| radical SAM domain protein [Roseobacter sp. GAI101]
          Length = 457

 Score = 76.1 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 45/240 (18%), Positives = 84/240 (35%), Gaps = 15/240 (6%)

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAF---LTIQEGCDKFCTFCVVPYTRGIEI 203
           + + D D      ++ + +       K     F   +    GC   C +C  P       
Sbjct: 173 RSLRDIDSLPMPAWDLIDLSRYREKWKAHHGRFELNIATSRGCPFHCNWCAKPIWGRAYN 232

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           +RS  ++ DE   L   G  +   +  ++ A       G   +F++ L         V+L
Sbjct: 233 ARSPEKIADEFAILAKQGNPDRIWVMDDIFA----MKPGWARSFANALK-----DRNVQL 283

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
            +      D+     +     D     L +  +SGS +IL +M +  +  +       ++
Sbjct: 284 PFKCLSRADLLLRKGEVEALADAGCQELWIGAESGSQKILDAMEKGTSLQQIDDATRLLK 343

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQV 382
                I +      G+PGET  D + T  L+ +            P  GTP    +L+Q+
Sbjct: 344 Q--HGIRVGFFLQYGYPGETWADIKQTFGLLRRNLPDVIGISVSYPLPGTPFHDRVLDQL 401


>gi|158522446|ref|YP_001530316.1| radical SAM domain-containing protein [Desulfococcus oleovorans
           Hxd3]
 gi|158511272|gb|ABW68239.1| Radical SAM domain protein [Desulfococcus oleovorans Hxd3]
          Length = 524

 Score = 76.1 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 58/313 (18%), Positives = 103/313 (32%), Gaps = 51/313 (16%)

Query: 96  KEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTD-- 153
           K   D+++V  G       E+ L  +  V+ VV  +    L +++E    G R+ D D  
Sbjct: 113 KVDPDMVIVTGGTHPSFLPEQTLSEAD-VDYVVLGEGELGLKQIIETHNSGGRIEDIDGV 171

Query: 154 -----------------------------YSVEDKFERLSIVDGGYNRKRGVTAFLTIQE 184
                                            + +    +    + RK   T  ++   
Sbjct: 172 AFRTENGVQVTPRTTWIEDLDTLPFPARDLLPMETYFEAKVPMALHWRKVRNTPIVS-SR 230

Query: 185 GCDKFCTFCVVPYTRG-IEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDG 242
           GC   C FC      G     RS   V+ E   L     + E+     N+ A      + 
Sbjct: 231 GCPFKCPFCSSWRHWGQRFRKRSAENVLAEITHLKSRYNIQELKWQDDNLTA----DRNR 286

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTT--SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300
            K  F  ++       GLV    T        +   ++            + L V+SG  
Sbjct: 287 AKAIFQGMIDR-----GLVMPWNTPNGIALWTLDGEMLDLMKKSG--CFEITLAVESGDP 339

Query: 301 RILK-SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
              +  + +  T  +  ++    R  R  I   + FI+GFPGET    ++++    ++G 
Sbjct: 340 ETFRRFVKKPFTLDQAAKVARMARERR--ITTVAYFILGFPGETVRQVKSSIRFGLRMGV 397

Query: 360 AQAFSFKYSPRLG 372
                F ++P  G
Sbjct: 398 DYLVPFIFNPLPG 410


>gi|116750654|ref|YP_847341.1| radical SAM domain-containing protein [Syntrophobacter fumaroxidans
           MPOB]
 gi|116699718|gb|ABK18906.1| Radical SAM domain protein [Syntrophobacter fumaroxidans MPOB]
          Length = 531

 Score = 76.1 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 51/235 (21%), Positives = 87/235 (37%), Gaps = 19/235 (8%)

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAF---LTIQEGCDKFCTFCV-VPY 197
               G+R V +  SV +       +D          +    +    GC   C FC  V  
Sbjct: 207 AHWDGRRYVFSPRSVSEVDPDDPSIDWDGMPDDLFKSGAVNVQASYGCPCKCEFCNFVRG 266

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257
            R   + + L  +V E  ++   G+  +  +  N    R   L+     F +   +L   
Sbjct: 267 DRPAHV-KPLGVLVSELTRIAARGIKYVRFVDDNFRLGR-NDLNRVCEAFLEAGLNL--- 321

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
                  +  S        L+K  G        + + V+S    +L+ MN++     Y +
Sbjct: 322 --KWMSFFRASSLEGADLELLKRAG-----CIEVQMGVESADREVLRRMNKKSDPDMYAR 374

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG-YAQAFSFKYSPRL 371
           +I R+      I  S  FIVGFPGET + F  T+D ++ +   +Q   F +S   
Sbjct: 375 VIGRLLDA--GIDCSCCFIVGFPGETRESFERTVDFIESMPNPSQPGLFSWSIYP 427


>gi|304314124|ref|YP_003849271.1| Fe-S oxidoreductase [Methanothermobacter marburgensis str. Marburg]
 gi|302587583|gb|ADL57958.1| predicted Fe-S oxidoreductase [Methanothermobacter marburgensis
           str. Marburg]
          Length = 464

 Score = 76.1 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 48/277 (17%), Positives = 92/277 (33%), Gaps = 30/277 (10%)

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG---IEIS 204
           R +  D        R  +    Y         +    GC   C +C      G      S
Sbjct: 164 RPLIEDLDEIPFPARHLVPFRDYETSSQDAGGMITSRGCVYPCRYCSSSLIMGKKFRFRS 223

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
              + V +    +   G+ +I  L                 TF        EI   ++ R
Sbjct: 224 -PENVVDEVEELVEVYGLHDIAFLDD---------------TFMLHRRRAREIAEEIQRR 267

Query: 265 -----YTTSHPRDMSDC-LIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
                + TS   DM    L++        M  ++  V+SG  R+L  M +  T  +    
Sbjct: 268 NIDVSFVTSSRVDMVQESLLRDLRAAG--MKTIYYGVESGCQRVLDMMKKGITVKQAEDA 325

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG-SN 377
           +   R     + + + FI+G+PGE   +   T+D   K+    +     +P  GTP  + 
Sbjct: 326 VRAARKA--GVEVITSFILGYPGEKPSEMDRTIDFSIKLDPDYSQYSILTPFPGTPLYAE 383

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQII 414
           +  Q       E    ++  ++ +++  +   + + +
Sbjct: 384 LRRQGLIEDDWENYTVIKPVIKYEKLGLSRELIQKKL 420


>gi|319410466|emb|CBY90826.1| lipoyl synthase (lipoic acid synthase; lipoate synthase;
           lipoyl-acyl-carrier protein synthase; sulfur insertion
           protein LipA2; lip-syn) [Neisseria meningitidis WUE
           2594]
          Length = 327

 Score = 76.1 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 42/250 (16%), Positives = 84/250 (33%), Gaps = 23/250 (9%)

Query: 127 VVGPQTYYRLPELLERARFGKRVVDT-----DYSVEDKFERLSIVDGGYNRKRGVTAFLT 181
           VV  Q   + PE +      ++  +      +  +    E  S  + G    +G   F+ 
Sbjct: 28  VVPLQEKLKKPEWIRAKLPSRKFFEIKDILREQKMHTVCEEASCPNIGECFSKGTATFMI 87

Query: 182 IQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD 241
           + + C + C FC V + R   +     +  + A  +    +  + +   +    R    D
Sbjct: 88  MGDICTRRCPFCDVGHGRPNML--DPDEPKNLAESVKAMNLRYVVITSVD----RDDLRD 141

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV-LMPY---LHLPVQS 297
           G    F+D + ++ E     ++       R   D  +K   +    +M +    H  +  
Sbjct: 142 GGAQHFADCIKAIRETSPNTKIEILVPDFRGRLDIALKILAETPPDVMNHNLETHPSLY- 200

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
                 +             ++ R + + P I   S  +VG  GETD+D R  M  +   
Sbjct: 201 ------RKARPGANYQHSLDLLKRYKEMMPHIPTKSGIMVGL-GETDEDVREIMRDMRAH 253

Query: 358 GYAQAFSFKY 367
                   +Y
Sbjct: 254 NIEMITIGQY 263


>gi|14520317|ref|NP_125792.1| hypothetical protein PAB0059 [Pyrococcus abyssi GE5]
 gi|5457532|emb|CAB49023.1| Fe-S oxidoreductase, putative [Pyrococcus abyssi GE5]
          Length = 581

 Score = 76.1 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 57/336 (16%), Positives = 109/336 (32%), Gaps = 40/336 (11%)

Query: 115 EEILRRSPIVNVVVGPQTYYRLPELLERARFGK-RVVDTDYSVEDKFERLSIVDGGYNRK 173
           +E+     + + VV       L + L        R  + +   +       +V       
Sbjct: 137 KELKFAEEVFDYVVYGDLEAFLFDYLSGREIDPFRFRNYEELRDYALLGAEVVKQFPGYP 196

Query: 174 RGVTAFLTIQEGCDK-----FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLL 228
             V A +  Q GC K      C+FC  P    +  +R    V +E R L   G+    + 
Sbjct: 197 EFVLAEIETQRGCPKAMGIGGCSFCTEPVRYPVVENREQEDVAEEIRVLYSLGIRHFRIG 256

Query: 229 GQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLD--- 285
            Q+         +G     +     + ++   VR     +    + +       +     
Sbjct: 257 RQSCIFSYKAKPNGRVPIPN--PDEVEKLFRGVRNAAPNAKTIHVDNANPAVIANYPDEA 314

Query: 286 -----VLMPYLH------LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV--------R 326
                 ++ Y          +++   R+ +  N   T  E  + +  I  V         
Sbjct: 315 RRIAKAIIKYGTPGNVVAFGLETADPRVARLNNLNATPEETYEAVKIINEVGARRGYNGL 374

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR-----LGTPGSNMLEQ 381
           P +    + I G PGET   +  T + + KI        + + R      GTP  NM ++
Sbjct: 375 PWLLPGINIIFGLPGETKRTYELTYEFLKKILDDGLMVRRINIRQVVVFPGTPLWNMRDK 434

Query: 382 VDENVKAERLLCLQKKLR-EQQVSFNDACVGQIIEV 416
           V    K E+   L K  R + +   +   + +++ V
Sbjct: 435 V----KTEKHKDLIKHYRHKIRHEIDLPMLKRVVPV 466


>gi|289522901|ref|ZP_06439755.1| putative radical SAM domain protein [Anaerobaculum hydrogeniformans
           ATCC BAA-1850]
 gi|289503925|gb|EFD25089.1| putative radical SAM domain protein [Anaerobaculum hydrogeniformans
           ATCC BAA-1850]
          Length = 495

 Score = 76.1 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 52/231 (22%), Positives = 91/231 (39%), Gaps = 22/231 (9%)

Query: 175 GVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA 234
           G T  L +Q GC + C +CVVP   G    RS   +     +  D           N N 
Sbjct: 217 GRTLLLELQRGCFRNCPYCVVPNNFGEARYRSAEDIASYIYEFKDY---------DNFNV 267

Query: 235 WRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP 294
                  G+      +L  ++++K  V   + +     +S+ +++A          + + 
Sbjct: 268 GLVTPEAGDHPELDFILDVITKVKKKVS--FASLRIDALSEKVVEAMAMGGK--RSITIA 323

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI-AISSDFIVGFPGETDDDFRATMDL 353
            ++GSD +  S+ +R T     + +         I +I   F++G P E DDD RA  +L
Sbjct: 324 PEAGSDDLRSSLKKRFTNKVIIEKLAMTNEY--GISSIKMYFMLGLPDEKDDDVRAIAEL 381

Query: 354 VDKIG-----YAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLR 399
             +I       +      + P+ GTP S+    V       RL  L++ L+
Sbjct: 382 TKEIWEQLKLKSTISISPFVPKPGTPFSDQP-FVGIKEGQRRLKILKENLK 431


>gi|268594806|ref|ZP_06128973.1| lipoyl synthase [Neisseria gonorrhoeae 35/02]
 gi|268596872|ref|ZP_06131039.1| lipoyl synthase [Neisseria gonorrhoeae FA19]
 gi|291043855|ref|ZP_06569571.1| lipoyl synthase [Neisseria gonorrhoeae DGI2]
 gi|293399070|ref|ZP_06643235.1| lipoyl synthase [Neisseria gonorrhoeae F62]
 gi|268548195|gb|EEZ43613.1| lipoyl synthase [Neisseria gonorrhoeae 35/02]
 gi|268550660|gb|EEZ45679.1| lipoyl synthase [Neisseria gonorrhoeae FA19]
 gi|291012318|gb|EFE04307.1| lipoyl synthase [Neisseria gonorrhoeae DGI2]
 gi|291610484|gb|EFF39594.1| lipoyl synthase [Neisseria gonorrhoeae F62]
          Length = 338

 Score = 76.1 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 42/250 (16%), Positives = 84/250 (33%), Gaps = 23/250 (9%)

Query: 127 VVGPQTYYRLPELLERARFGKRVVDT-----DYSVEDKFERLSIVDGGYNRKRGVTAFLT 181
           VV  Q   + PE +      ++  +      +  +    E  S  + G    +G   F+ 
Sbjct: 39  VVPLQEKLKKPEWIRAKLPSRKFFEIKDILREQKMHTVCEEASCPNIGECFSKGTATFMI 98

Query: 182 IQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD 241
           + + C + C FC V + R   +     +  + A  +    +  + +   +    R    D
Sbjct: 99  MGDICTRRCPFCDVGHGRPNML--DPDEPKNLAESVKAMNLRYVVITSVD----RDDLRD 152

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV-LMPY---LHLPVQS 297
           G    F+D + ++ E     ++       R   D  +K   +    +M +    H  +  
Sbjct: 153 GGAQHFADCIKAIRETSPNTKIEILVPDFRGRLDIALKILAETPPDVMNHNLETHPSLY- 211

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
                 +             ++ R + + P I   S  +VG  GETD+D R  M  +   
Sbjct: 212 ------RKARPGANYQHSLDLLKRYKEMMPHIPTKSGIMVGL-GETDEDVREIMRDMRAH 264

Query: 358 GYAQAFSFKY 367
                   +Y
Sbjct: 265 NIEMITIGQY 274


>gi|116626762|ref|YP_828918.1| radical SAM domain-containing protein [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116229924|gb|ABJ88633.1| Radical SAM domain protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 492

 Score = 76.1 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 50/293 (17%), Positives = 100/293 (34%), Gaps = 27/293 (9%)

Query: 88  RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147
           R  + +         V++ G    +  EE       + +  G Q + R+ E +E      
Sbjct: 92  RAFELAAWYRSRGSKVIMGGLHVLSCPEECAPHGDALAIGDGVQLWPRILEDVEGGTLKP 151

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQ-EGCDKFCTFC--VVPYTRGIEIS 204
           R + T  +  D     +       R+  +T    I   GC   C FC       R     
Sbjct: 152 RYLATYEN--DYRSDPAPRRSILPRRSFLTTTSLIATRGCHNRCEFCYLATDGLRMPYRM 209

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R  +QV   A +   +          N+ + R            + L +L      +   
Sbjct: 210 RDPAQV---AAEFAADDQPYAVFTDNNLGSNR------------EYLKALCNALKPLNKI 254

Query: 265 YTTSHPRDMSDC--LIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH-TAYEYRQIIDR 321
           ++ +   D++D   LI++          + +  +S +D  L    ++     +Y + +  
Sbjct: 255 WSAAVSIDVTDDPGLIRSMALAG--CTGVFVGFESLTDENLTEARKKTPRTADYARRVRI 312

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
           +      I ++S F++GF  +  D F  T + V++     +     +P   TP
Sbjct: 313 LHDN--GIQVNSSFVLGFDHDRKDVFARTAEWVEENRLECSTFHILTPYPATP 363


>gi|284164581|ref|YP_003402860.1| radical SAM protein [Haloterrigena turkmenica DSM 5511]
 gi|284014236|gb|ADB60187.1| Radical SAM domain protein [Haloterrigena turkmenica DSM 5511]
          Length = 575

 Score = 76.1 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 63/385 (16%), Positives = 121/385 (31%), Gaps = 50/385 (12%)

Query: 125 NVVVGPQTYYRLPELLERARFG--KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTI 182
           + V        + +L+E    G   R+ D D       E   IV+   N    + A L  
Sbjct: 135 DFVAKGDVEAAVHDLVESGLEGFNNRMRDIDEVSRWAQEGAFIVEQHPNHPDHLIAELET 194

Query: 183 QEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQ-NVNAWRGKGLD 241
             GC   C+FC  P        R    VV E   L D GV    +  Q ++ A+ G G  
Sbjct: 195 SRGCAYRCSFCTEPLYGNPSF-RPPPTVVGEVDALSDFGVKHFRIGRQADILAYGGDGEA 253

Query: 242 GEKCTFSDLLYSLSEI-KGLVRLRYTTSHPR------DMSDCLIKAHGDLDVLMPYLHLP 294
                   L   + E+   L  L     +P       + S   I+   + +         
Sbjct: 254 PNPDALRQLYSGIREVAPDLETLHLDNMNPITIVNWPEQSREGIRIIAEHNTPGDTAAFG 313

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRS----------------------VRPDIAIS 332
           ++S    + +  N   +A E  + +  +                          P +   
Sbjct: 314 LESADPVVQEENNLNVSAEECFEAVRIVNEEAGWRPGEDPADAPTFGDDAPRRLPKLLPG 373

Query: 333 SDFIVGFPGETDDDFRATMDLVDKIGYA------QAFSFKYSPRLGTPGSNMLEQVDENV 386
            + + G  GE ++ +    + + ++ Y       +    +     GT   +M +     +
Sbjct: 374 INLLHGLKGEREETYERNREFLQRV-YDEGYMLRRINIRQVMSFAGT---DMSD-TGAEI 428

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIE---VL--IEKHGKEKGKLVGR-SPWLQSVVL 440
             E     ++   + +   ++  + ++     VL  +     + GK  GR       +V 
Sbjct: 429 ANEHKQLFKRYKTQVREEIDNPMLKRVAPRGTVLPDVHLEYHQDGKTFGRQLGTYPLLVG 488

Query: 441 NSKNHNIGDIIKVRITDVKISTLYG 465
                 +G  I V + D    ++ G
Sbjct: 489 IPGERELGRTIDVAVVDHGYRSVTG 513


>gi|257125084|ref|YP_003163198.1| radical SAM protein [Leptotrichia buccalis C-1013-b]
 gi|257049023|gb|ACV38207.1| Radical SAM domain protein [Leptotrichia buccalis C-1013-b]
          Length = 434

 Score = 76.1 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 56/324 (17%), Positives = 113/324 (34%), Gaps = 34/324 (10%)

Query: 63  DLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSP 122
           DL+V++T  +             R   L  +  K G  + V++ G  A    +E+   + 
Sbjct: 55  DLVVISTFTMTA----------RRAYELAENYRKRG--VYVMIGGYHASLMPDEVQEHAD 102

Query: 123 IVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTI 182
            V V  G  T+      LE     KR       + D    +        +K      +  
Sbjct: 103 TVCVGSGEVTWNEFLNDLENGVPKKRY--ECRKLPDINNVVYDRSIYKGKKYSFVVPVQF 160

Query: 183 QEGCDKFCTFCVVPYTR-GIEISRSLSQVVDEARKLI--DNGVCEITLLGQNVNAWRGKG 239
             GC   C FC +     G    R +  V++E +++   +     +  +  N+ A     
Sbjct: 161 GRGCMHQCEFCTIGAVHKGDFQHRDVENVINEVKEIFRTNKRAKIVYFVDDNIFA----- 215

Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDC--LIKAHGDLDVLMPYLHLPVQS 297
               K     L   L ++K    +++      D++    LIK   +   +   + L  ++
Sbjct: 216 ---NKKKALKLFEELKKLK----IKWACQGSIDIARDEKLIKLMSEAGCI--EMLLGFEN 266

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
            + + +K M +        + I  I      I + + +++G+  +  + F   ++   K 
Sbjct: 267 INIKNIKKMKKVANYEFDYEKIINIYKKNK-ILVHASYVIGYDYDDKNCFDEILEFSKKH 325

Query: 358 GYAQAFSFKYSPRLGTPGSNMLEQ 381
            +  A      P  GTP    L++
Sbjct: 326 KFFLAGFNPALPIPGTPFYERLKK 349


>gi|218438145|ref|YP_002376474.1| radical SAM protein [Cyanothece sp. PCC 7424]
 gi|218170873|gb|ACK69606.1| Radical SAM domain protein [Cyanothece sp. PCC 7424]
          Length = 522

 Score = 76.1 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 57/359 (15%), Positives = 118/359 (32%), Gaps = 44/359 (12%)

Query: 57  NSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEE 116
              + ADL++++   +++         + +I+  K          LV V G    +    
Sbjct: 61  EEWNWADLVIISGMIVQKP------DLIAQIQEAKQRGK------LVAVGGAYPTSVP-- 106

Query: 117 ILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGV 176
           +       + ++  +    LPE +E    G+       S +       I           
Sbjct: 107 LDMEQAGADFLILDEGENTLPEFVEALNRGETQGIFRSSEKPDITLTPIPRYDLLELDAY 166

Query: 177 -TAFLTIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVCEITLLGQNVNA 234
            +  +    GC   C FC +    G +  +++  Q++ E   L   G      +  +   
Sbjct: 167 DSMSIQFSRGCPFQCEFCDIIILYGRKPRTKTPFQLLKELDYLYQLGWRRGVFMVDD--- 223

Query: 235 WRGKGLDGEKCTFSDLLYSLS--EIKGLVRLRYTTSHPRDM--SDCLIKAHGDLDVLMPY 290
                  G K    + L  L   +I+     R+ T    D+   D L+    + +     
Sbjct: 224 ----NFIGNKRNVKNFLRQLKVWQIEHHFPFRFNTEASVDLAQDDELMDLMVECN--FDA 277

Query: 291 LHLPVQSGSDRILKSMNRR-HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           + L +++  +  LK   +  +T +   + +D++  +R  +   + FI+GF GE       
Sbjct: 278 VFLGIETPDEDSLKLTKKFQNTRHPLLETVDKM--IRKGLRPMAGFIIGFDGEKPGAATR 335

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDA 408
            +D V++     A          T               ERL    + L   +   N +
Sbjct: 336 IIDFVEEAAIPTAMFGMLQALPNTAL------------WERLEKEGRLLANNKQDINQS 382


>gi|325202090|gb|ADY97544.1| lipoic acid synthetase [Neisseria meningitidis M01-240149]
 gi|325208156|gb|ADZ03608.1| lipoic acid synthetase [Neisseria meningitidis NZ-05/33]
          Length = 327

 Score = 76.1 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 42/250 (16%), Positives = 84/250 (33%), Gaps = 23/250 (9%)

Query: 127 VVGPQTYYRLPELLERARFGKRVVDT-----DYSVEDKFERLSIVDGGYNRKRGVTAFLT 181
           VV  Q   + PE +      ++  +      +  +    E  S  + G    +G   F+ 
Sbjct: 28  VVPLQEKLKKPEWIRAKLPSRKFFEIKDILREQKMHTVCEEASCPNIGECFSKGTATFMI 87

Query: 182 IQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD 241
           + + C + C FC V + R   +     +  + A  +    +  + +   +    R    D
Sbjct: 88  MGDICTRRCPFCDVGHGRPNML--DPDEPKNLAESVKAMNLRYVVITSVD----RDDLRD 141

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV-LMPY---LHLPVQS 297
           G    F+D + ++ E     ++       R   D  +K   +    +M +    H  +  
Sbjct: 142 GGAQHFADCIKAIRETSPNTKIEILVPDFRGRLDIALKILAETPPDVMNHNLETHPSLY- 200

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
                 +             ++ R + + P I   S  +VG  GETD+D R  M  +   
Sbjct: 201 ------RKARPGANYQHSLDLLKRYKEMMPHIPTKSGIMVGL-GETDEDVREIMRDMRAH 253

Query: 358 GYAQAFSFKY 367
                   +Y
Sbjct: 254 NIEMITIGQY 263


>gi|218768220|ref|YP_002342732.1| lipoyl synthase [Neisseria meningitidis Z2491]
 gi|254804993|ref|YP_003083214.1| lipoic acid synthetase [Neisseria meningitidis alpha14]
 gi|304387527|ref|ZP_07369716.1| lipoyl synthase [Neisseria meningitidis ATCC 13091]
 gi|23813619|sp|Q9JUC8|LIPA_NEIMA RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|121052228|emb|CAM08551.1| putative lipoic acid synthetase [Neisseria meningitidis Z2491]
 gi|254668535|emb|CBA05952.1| lipoic acid synthetase [Neisseria meningitidis alpha14]
 gi|254673010|emb|CBA07545.1| lipoic acid synthetase [Neisseria meningitidis alpha275]
 gi|261392521|emb|CAX50076.1| lipoyl synthase (lipoic acid synthase; lipoate synthase;
           lipoyl-acyl-carrier protein synthase; sulfur insertion
           protein LipA2; lip-syn) [Neisseria meningitidis 8013]
 gi|304338414|gb|EFM04535.1| lipoyl synthase [Neisseria meningitidis ATCC 13091]
 gi|308389310|gb|ADO31630.1| putative lipoic acid synthetase [Neisseria meningitidis alpha710]
 gi|325130280|gb|EGC53048.1| lipoic acid synthetase [Neisseria meningitidis OX99.30304]
 gi|325132221|gb|EGC54915.1| lipoic acid synthetase [Neisseria meningitidis M6190]
 gi|325136298|gb|EGC58906.1| lipoic acid synthetase [Neisseria meningitidis M0579]
 gi|325138204|gb|EGC60774.1| lipoic acid synthetase [Neisseria meningitidis ES14902]
 gi|325142412|gb|EGC64818.1| lipoic acid synthetase [Neisseria meningitidis 961-5945]
 gi|325204200|gb|ADY99653.1| lipoic acid synthetase [Neisseria meningitidis M01-240355]
          Length = 327

 Score = 76.1 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 42/250 (16%), Positives = 84/250 (33%), Gaps = 23/250 (9%)

Query: 127 VVGPQTYYRLPELLERARFGKRVVDT-----DYSVEDKFERLSIVDGGYNRKRGVTAFLT 181
           VV  Q   + PE +      ++  +      +  +    E  S  + G    +G   F+ 
Sbjct: 28  VVPLQEKLKKPEWIRAKLPSRKFFEIKDILREQKMHTVCEEASCPNIGECFSKGTATFMI 87

Query: 182 IQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD 241
           + + C + C FC V + R   +     +  + A  +    +  + +   +    R    D
Sbjct: 88  MGDICTRRCPFCDVGHGRPNML--DPDEPKNLAESVKAMNLRYVVITSVD----RDDLRD 141

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV-LMPY---LHLPVQS 297
           G    F+D + ++ E     ++       R   D  +K   +    +M +    H  +  
Sbjct: 142 GGAQHFADCIKAIRETSPNTKIEILVPDFRGRLDIALKILAETPPDVMNHNLETHPSLY- 200

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
                 +             ++ R + + P I   S  +VG  GETD+D R  M  +   
Sbjct: 201 ------RKARPGANYQHSLDLLKRYKEMMPHIPTKSGIMVGL-GETDEDVREIMRDMRAH 253

Query: 358 GYAQAFSFKY 367
                   +Y
Sbjct: 254 NIEMITIGQY 263


>gi|295084743|emb|CBK66266.1| coproporphyrinogen III oxidase, anaerobic [Bacteroides
           xylanisolvens XB1A]
          Length = 376

 Score = 75.8 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 53/233 (22%), Positives = 87/233 (37%), Gaps = 20/233 (8%)

Query: 186 CDKFCTFCVV-PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR---GKGLD 241
           C   C +C     TR    +R +  +        +  + +  L G+++       G    
Sbjct: 11  CKTRCIYCDFYSTTRSELKTRYVQALCR------ELTMRKEYLKGEDIETIYFGGGTPSQ 64

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPR--DMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
            EK  F  +  ++ E  GL   +  T      D+S   ++    L      L + +Q+  
Sbjct: 65  LEKEDFEQIFDTIREHYGLNHCQEITLEANPDDLSQEYLEMLSSLP--FNRLSMGIQTFD 122

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
           D  LK + RRH A    + IDR R       IS D I G PGET + +   +     +  
Sbjct: 123 DATLKLLRRRHNARTAIEAIDRCRKADFQ-NISIDLIYGLPGETKERWENDLRQAISLNV 181

Query: 360 AQAFSFKYSPRLGTPGSNMLEQ-----VDENVKAERLLCLQKKLREQQVSFND 407
               ++       TP  NML+Q     VDE+   E    L + L++      +
Sbjct: 182 EHISAYHLIYEEDTPIYNMLKQHQISEVDEDSSLEFFTLLIEHLQKAGFEHYE 234


>gi|59801207|ref|YP_207919.1| lipoyl synthase [Neisseria gonorrhoeae FA 1090]
 gi|194098582|ref|YP_002001644.1| lipoyl synthase [Neisseria gonorrhoeae NCCP11945]
 gi|239998959|ref|ZP_04718883.1| lipoyl synthase [Neisseria gonorrhoeae 35/02]
 gi|240014129|ref|ZP_04721042.1| lipoyl synthase [Neisseria gonorrhoeae DGI18]
 gi|240016564|ref|ZP_04723104.1| lipoyl synthase [Neisseria gonorrhoeae FA6140]
 gi|240080753|ref|ZP_04725296.1| lipoyl synthase [Neisseria gonorrhoeae FA19]
 gi|240112878|ref|ZP_04727368.1| lipoyl synthase [Neisseria gonorrhoeae MS11]
 gi|240115634|ref|ZP_04729696.1| lipoyl synthase [Neisseria gonorrhoeae PID18]
 gi|240121691|ref|ZP_04734653.1| lipoyl synthase [Neisseria gonorrhoeae PID24-1]
 gi|240123486|ref|ZP_04736442.1| lipoyl synthase [Neisseria gonorrhoeae PID332]
 gi|240125730|ref|ZP_04738616.1| lipoyl synthase [Neisseria gonorrhoeae SK-92-679]
 gi|254493749|ref|ZP_05106920.1| lipoyl synthase [Neisseria gonorrhoeae 1291]
 gi|260440553|ref|ZP_05794369.1| lipoyl synthase [Neisseria gonorrhoeae DGI2]
 gi|268598962|ref|ZP_06133129.1| lipoyl synthase [Neisseria gonorrhoeae MS11]
 gi|268601315|ref|ZP_06135482.1| lipoyl synthase [Neisseria gonorrhoeae PID18]
 gi|268682116|ref|ZP_06148978.1| lipoyl synthase [Neisseria gonorrhoeae PID332]
 gi|268684326|ref|ZP_06151188.1| lipoyl synthase [Neisseria gonorrhoeae SK-92-679]
 gi|75432497|sp|Q5F8I0|LIPA_NEIG1 RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|238690199|sp|B4RLK9|LIPA_NEIG2 RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|59718102|gb|AAW89507.1| putative lipoic acid synthetase [Neisseria gonorrhoeae FA 1090]
 gi|193933872|gb|ACF29696.1| lipoyl synthase [Neisseria gonorrhoeae NCCP11945]
 gi|226512789|gb|EEH62134.1| lipoyl synthase [Neisseria gonorrhoeae 1291]
 gi|268583093|gb|EEZ47769.1| lipoyl synthase [Neisseria gonorrhoeae MS11]
 gi|268585446|gb|EEZ50122.1| lipoyl synthase [Neisseria gonorrhoeae PID18]
 gi|268622400|gb|EEZ54800.1| lipoyl synthase [Neisseria gonorrhoeae PID332]
 gi|268624610|gb|EEZ57010.1| lipoyl synthase [Neisseria gonorrhoeae SK-92-679]
 gi|317164252|gb|ADV07793.1| lipoyl synthase [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 327

 Score = 75.8 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 42/250 (16%), Positives = 84/250 (33%), Gaps = 23/250 (9%)

Query: 127 VVGPQTYYRLPELLERARFGKRVVDT-----DYSVEDKFERLSIVDGGYNRKRGVTAFLT 181
           VV  Q   + PE +      ++  +      +  +    E  S  + G    +G   F+ 
Sbjct: 28  VVPLQEKLKKPEWIRAKLPSRKFFEIKDILREQKMHTVCEEASCPNIGECFSKGTATFMI 87

Query: 182 IQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD 241
           + + C + C FC V + R   +     +  + A  +    +  + +   +    R    D
Sbjct: 88  MGDICTRRCPFCDVGHGRPNML--DPDEPKNLAESVKAMNLRYVVITSVD----RDDLRD 141

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV-LMPY---LHLPVQS 297
           G    F+D + ++ E     ++       R   D  +K   +    +M +    H  +  
Sbjct: 142 GGAQHFADCIKAIRETSPNTKIEILVPDFRGRLDIALKILAETPPDVMNHNLETHPSLY- 200

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
                 +             ++ R + + P I   S  +VG  GETD+D R  M  +   
Sbjct: 201 ------RKARPGANYQHSLDLLKRYKEMMPHIPTKSGIMVGL-GETDEDVREIMRDMRAH 253

Query: 358 GYAQAFSFKY 367
                   +Y
Sbjct: 254 NIEMITIGQY 263


>gi|284998144|ref|YP_003419911.1| Radical SAM domain protein [Sulfolobus islandicus L.D.8.5]
 gi|284446039|gb|ADB87541.1| Radical SAM domain protein [Sulfolobus islandicus L.D.8.5]
          Length = 528

 Score = 75.8 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 57/294 (19%), Positives = 105/294 (35%), Gaps = 26/294 (8%)

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
           K S++K   +  V+V G  +    +E       V+V+   +    LP +++    G+ V 
Sbjct: 134 KISKLKSKYNFKVIVGGPGSWELTKE---NKDWVDVIFIGEAEADLPRVVKSIIDGQEVP 190

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC-VVPYTRGIEISRSLSQ 209
              Y    K   +  +             + I  GC + C FC + P T     +  L  
Sbjct: 191 KVVYGKNPKVNEIPPIINPARLGE-----VQITRGCPRGCQFCPITPET---FRTIPLDV 242

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE--IKGLVRLRYTT 267
           V  E    +  GV  +  +  +V  +  + L       + L        + G+     + 
Sbjct: 243 VKKEVEVNMRAGVKRVEFITDDVLLYGSQKLRVNHEAITKLFTETMNMGVDGIWFPHISA 302

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLH----LPVQSGSDRILKSMNR----RHTAYEYRQII 319
              R  S   +KA  ++            + ++SGS++IL    R      T  E++ +I
Sbjct: 303 PAVRS-SPQTVKAMSEIARYDEDRAAAPVVGLESGSEKILSKYMRAKPFPWTPREWKDVI 361

Query: 320 DRIRSVRPD--IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
               ++  D  I       +G+P ET++D   ++DLV  I           P  
Sbjct: 362 LDATAIMNDNYIYPCYTMTIGYPEETNEDVDQSIDLVQSI-IDHKLKAWIFPLP 414


>gi|15789567|ref|NP_279391.1| hypothetical protein VNG0284C [Halobacterium sp. NRC-1]
 gi|169235279|ref|YP_001688479.1| hypothetical protein OE1438F [Halobacterium salinarum R1]
 gi|10579917|gb|AAG18871.1| conserved hypothetical protein [Halobacterium sp. NRC-1]
 gi|167726345|emb|CAP13126.1| conserved hypothetical protein [Halobacterium salinarum R1]
          Length = 564

 Score = 75.8 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 74/459 (16%), Positives = 144/459 (31%), Gaps = 60/459 (13%)

Query: 57  NSMDDADLIV-LNTCHI------REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCV 109
           N + DADL V +    +         A       +  +  L +     GG +   V    
Sbjct: 65  NDVADADLFVYVGGMTVPGKYVGGTPAEP---DEVRELAWLADGTSVMGGPVRFGVGEEN 121

Query: 110 AQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG--KRVVDTDYSVEDKFERLSIVD 167
           A A  +E+ R     + +          +L++    G   R  D         +   +V+
Sbjct: 122 AGA--QEMERSDLDFDFLAMADIEAAAYDLVDNGLEGFEDRYRDNQEINRWAAKGAFVVE 179

Query: 168 GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITL 227
              N    +   +    GC   C+FC  P   G    RS   VV E  +L  +G     L
Sbjct: 180 QHPNYPEYLICEMETSRGCAYRCSFCTEP-MYGDPSFRSADAVVTEVGELYAHGARHFRL 238

Query: 228 LGQ-NVNAWRGKGLDGEKCTFSDLLYSLSEIKG-------LVRLRYTTSHPRDMSDCLIK 279
             Q ++ A+ G G         DL   + E+               T     + S   I+
Sbjct: 239 GRQADILAFGGDGEAPNPDALRDLYGGIREVAPELGTLHLDNMNPVTIVDYPEKSRDAIR 298

Query: 280 AHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV-------------- 325
              + +         ++S    + +  +   +A E  + +  +  V              
Sbjct: 299 VIAEHNTPGDTAAFGLESADPLVQEENHLLVSAEECLEAVRIVNEVGGWRPGESPADAPS 358

Query: 326 --------RPDIAISSDFIVGFPGETDDDFRATMDLV-----DKIGYAQAFSFKYSPRLG 372
                    P +    + + G  GE  + F      +     + +   +    +     G
Sbjct: 359 WGEGSPDRLPKLLPGINLLHGLTGERAETFEHNKQFLHSLLDEGLMVRRINIRQVMAFEG 418

Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIE---VL--IEKHGKEKGK 427
           T  ++    + +N K       ++   + + + ++A + +++    VL  +     + GK
Sbjct: 419 TEMADTGVDLAQNHKQ----LFKQYKTDVRETIDNAMLQRVVPPGTVLKDVTLEYHQDGK 474

Query: 428 LVGR-SPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYG 465
             GR       +V       +G  I V ITD    ++ G
Sbjct: 475 TFGRQLGTYSLLVAIPGERELGQTIDVAITDHGYRSVTG 513


>gi|1061002|dbj|BAA32490.1| phosphonoacetaldehyde methylase [Streptomyces wedmorensis]
          Length = 534

 Score = 75.8 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 64/329 (19%), Positives = 115/329 (34%), Gaps = 43/329 (13%)

Query: 110 AQAEGEEILRRSPIVNVV-----VGPQTYYRLPELLERARFGKRVVDTDYSVE-DKFERL 163
           A  + +  ++  P + ++      GP+T    P L              +    +K+  +
Sbjct: 201 AWRDRDGKVQIKPELPLISSMRPEGPETGKSSPMLSMAGELDHIPFPAWHHYNMEKYFEI 260

Query: 164 SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG-IEISRSLSQVVDEARKLIDN-G 221
                 Y     V   L    GC   CTFC   +  G     RS+  VVDE  +L D  G
Sbjct: 261 KAYQSPYTVGSRV-GQLYTSRGCTAHCTFCTTTHFWGQKLRRRSVQDVVDEVLRLRDEYG 319

Query: 222 VCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAH 281
           + E  +   N+                +L  +  E+ GL       +    M + L+   
Sbjct: 320 IDEFHIQDDNITNDMDHA--------RELFRAFKEV-GLPWATPQGTALWRMDEELLDLM 370

Query: 282 GDLDVLMPYLHLPVQSGSDRILK-SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFP 340
            +       +   ++SG  R+LK  + +         +I   RS+   + +   FI+G P
Sbjct: 371 AESGAY--QVTFAIESGVQRVLKELIKKPLNLERTSHLIKYARSL--GMHVHGFFIIGMP 426

Query: 341 ------GETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN---MLEQVDENVKAERL 391
                 GE+ ++ +A+ D  ++ G++ A  F  SP +G+           VD      R+
Sbjct: 427 PMCGNAGESIEEMQASYDYAEEAGFSSASFFAASPIVGSELLRECIRQGFVDPEESLYRM 486

Query: 392 LCLQ-----------KKLREQQVSFNDAC 409
              Q           +++ E    FN   
Sbjct: 487 TYKQGIINVPGLWDGEEIAELAAKFNRDF 515


>gi|262066487|ref|ZP_06026099.1| BchE/P-methylase family protein [Fusobacterium periodonticum ATCC
           33693]
 gi|291379791|gb|EFE87309.1| BchE/P-methylase family protein [Fusobacterium periodonticum ATCC
           33693]
          Length = 447

 Score = 75.8 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 58/317 (18%), Positives = 106/317 (33%), Gaps = 36/317 (11%)

Query: 61  DADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRR 120
           +AD+IV+ +       +++ Y++    R            + VV+ G       EE  + 
Sbjct: 60  EADIIVMTS---ITGTSQRCYAYADYFRK---------RGIKVVLGGVHPSLMPEEASQ- 106

Query: 121 SPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGV--TA 178
               +VV+        P++L   + G          E   E   I      +K     TA
Sbjct: 107 --HADVVMVGFAEQTFPQMLLDFKSGNLKRMYIQDKEFNLENKVIPRRELLQKDKYITTA 164

Query: 179 FLTIQEGCDKFCTFCVVPYTRGIEIS-RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG 237
            + +  GC   CTFC  P   G +I  R + +V+ E     +     I     N+ A   
Sbjct: 165 TVEVVRGCSLPCTFCAYPTAFGRKIYKRPIKEVLSEIEMFSE---KIILFPDVNLIA--- 218

Query: 238 KGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQS 297
                ++     L   +  +        T+S   D +  +IK   D       L +  +S
Sbjct: 219 -----DREYAMRLFKEMKSLNKYWMGLVTSSVGIDEN--MIKTFADSG--CKGLLIGFES 269

Query: 298 GSDRILKSMNRRHT-AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
            +      +N+      +Y +++ ++      I +   F  G   E    F  T++ V K
Sbjct: 270 ITQESQSYINKGINKVADYAELMKKLHDY--GILVQGCFAFGSDEEDTSVFERTVEAVVK 327

Query: 357 IGYAQAFSFKYSPRLGT 373
                      +P   T
Sbjct: 328 AKIDLPRYSILTPFPKT 344


>gi|322418157|ref|YP_004197380.1| Radical SAM domain-containing protein [Geobacter sp. M18]
 gi|320124544|gb|ADW12104.1| Radical SAM domain protein [Geobacter sp. M18]
          Length = 504

 Score = 75.8 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 65/417 (15%), Positives = 135/417 (32%), Gaps = 70/417 (16%)

Query: 43  RMEDMFFSQGYERVNSMDDADLI----------------VLNTCHIREKAAEKVYSFLGR 86
            +     + GYE V+  D   L                 V+ T              +  
Sbjct: 31  YIAGSLRAAGYE-VDYYDAMSLWHKWPEIEERIRAFAPDVVATTSFTAS--------IAH 81

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILR-RSPIVNVVVGPQTYYRLPELLERARF 145
              L     +    ++ V     A    +EIL+     V+ VV  +    L +LL+    
Sbjct: 82  ALELTALAKRINPQVVTVHGNVHATFCYDEILQAEHDTVDFVVRGEGEVTLVKLLDCLNA 141

Query: 146 GKRVVDTD-------------------YSVEDKFERLSIVDGGYNRKRGVT----AFLTI 182
           G                            ++       +V+    R R       A ++ 
Sbjct: 142 GGDPAAVPGLSFWRDGAVVSTAKAASIQDLDSLPMAWDLVEWPIYRYRAKNNARLAIVSS 201

Query: 183 QEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD 241
             GC + C+FC           +RS    V E   L D+   E+ +L   +  +      
Sbjct: 202 SRGCMEKCSFCSQQLFWERSWRARSPENFVAELELLRDSYGVEVAMLSDEIPTF------ 255

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL-DVLMPYLHLPVQSGSD 300
            ++  +  +L  +  I+  V ++       D             +  + ++++ V++G  
Sbjct: 256 -DRERWVRILDLM--IERKVGVKLLMETRVDDILRDADVMEKYREAGVEHIYVGVEAGDQ 312

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
             L   N+     + +  ID I +   DI   + F++G P +T +    T++L       
Sbjct: 313 ETLDLFNKNTKVEQSKAAIDIINNA--DIVSETSFVLGMPDDTPESIAKTIELAKHYNPD 370

Query: 361 QAFSFKYSPRLGTPGSNMLEQVDENV--KAERLLCLQKKL---REQQVSFNDACVGQ 412
            AF    +P      + +  ++++ V  K  R   L + +   ++  +   +  +G+
Sbjct: 371 MAFFLAIAPWPY---AELYPELEQYVATKDYRKYNLVEPVIKPKQMTLEELERELGK 424


>gi|291280016|ref|YP_003496851.1| hypothetical protein DEFDS_1639 [Deferribacter desulfuricans SSM1]
 gi|290754718|dbj|BAI81095.1| conserved hypothetical protein [Deferribacter desulfuricans SSM1]
          Length = 512

 Score = 75.8 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 55/344 (15%), Positives = 114/344 (33%), Gaps = 39/344 (11%)

Query: 57  NSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEE 116
             +  AD+++++   ++    +     + + ++        G    V            E
Sbjct: 61  EDIRWADIVMISAMSVQ---KDSTLEVIKKCKDFGVKIAGGGPLFTV------------E 105

Query: 117 ILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGV 176
             +   +  + +G    +    + +  +  +  +    +  D  +  +      N     
Sbjct: 106 FEKFKDVDYLFIGEGELHIEDFVYDIKKGVESKIYKSENFADLTKSPAPSWEIININDYA 165

Query: 177 TAFLTIQEGCDKFCTFCVVPYTRG-IEISRSLSQVVDEARKLIDNGVCEIT-LLGQNVNA 234
           T  L    GC   C FC V    G    ++S  Q++ E  K+ + G       +  N  A
Sbjct: 166 TLSLQFSRGCPYSCDFCNVTSMFGHKVRTKSSEQILFELEKIYNTGFRGGVFFVDDNFIA 225

Query: 235 WRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY----TTSHPRDMSDCLIKAHGDLDVLMPY 290
            R K         +DLL  L       R  +      S      D LI     +      
Sbjct: 226 HRSK-------LKNDLLPKLINWMKEKRYPFEFFTQVSINISDDDELIDLM--VKAGFDT 276

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
           + + ++S ++  L   N+        +    I+  +  + +   FIVGF  + +D F   
Sbjct: 277 VFIGIESPNEDSLIESNKYQNVKRDLKK-SIIKLHKKGLQVQGGFIVGFDNDREDIFDKQ 335

Query: 351 MDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAE-RLLC 393
           ++ + + G   A     +   GT    + +++    K E RLL 
Sbjct: 336 INFIQESGIISAMVGILNAPPGT---KLYDKL----KKENRLLE 372


>gi|223939110|ref|ZP_03630994.1| Radical SAM domain protein [bacterium Ellin514]
 gi|223892270|gb|EEF58747.1| Radical SAM domain protein [bacterium Ellin514]
          Length = 510

 Score = 75.8 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 51/330 (15%), Positives = 103/330 (31%), Gaps = 22/330 (6%)

Query: 93  SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDT 152
           +  +   D+ +V+ G     E +   +     + V+  +   +  EL      G +    
Sbjct: 78  ALKRIRPDITIVLGGPEVSFEVDR-QQIINQADFVITGEADLKFAELCRTLISGGKPAGK 136

Query: 153 DYSVE-DKFERLSIVDGGYNRKR--GVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209
               E    E+L++    YN +       ++    GC   C FC+            L  
Sbjct: 137 IIPAELPALEQLALPYHLYNERDVAHRIIYVEASRGCPFTCEFCLSSLDV-PVRQFPLPV 195

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSH 269
           ++    +L+  GV +   + +  N      L+  K      L       GL         
Sbjct: 196 LLQNLEELLSRGVQQFKFVDRTFNLN----LNTSKALLQFFLDRFR--PGLFVHFEMIPD 249

Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329
              + + L +             + +Q+ +  + K ++RR            +R     +
Sbjct: 250 R--LPEALREVIAKFPPGALQFEVGIQTFNPEVSKLISRRQDYERLADNFRFLREHT-GV 306

Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP--------GSNMLEQ 381
            I +D IVG PGET + F    D +  +   +          GTP             E 
Sbjct: 307 HIHADLIVGLPGETVESFGEGFDRLVALKPQEIQVGILKRLRGTPIVRHDAEWSMTYGEH 366

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVG 411
               +   +L+      + ++ +     +G
Sbjct: 367 PPYEILQTKLIDFAAMQKMRRFARFWDLIG 396


>gi|218661968|ref|ZP_03517898.1| Mg-protoporphyrin IX monomethyl ester oxidative cyclase subunit
           protein [Rhizobium etli IE4771]
          Length = 473

 Score = 75.8 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 54/328 (16%), Positives = 103/328 (31%), Gaps = 37/328 (11%)

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVV---GPQTYYRLPELLERA 143
            R +  +  +    + +V  G        E+L  +   ++VV   G +T  RL + L   
Sbjct: 82  ARAIAEAVKRCDPAIRIVYGGVFPTYHWREVLAETEAFDIVVRGEGEETMRRLADALAAN 141

Query: 144 RFGKRVVDTDYSVEDKFERLSIV------------------DGGYNRKRGVTAFL-TIQE 184
           R    +    Y       R                         Y+   G  A +     
Sbjct: 142 RPLDSIAGVAYRDRTAKSRQPSPAQAIADLDAYRIGWELIDHARYSYWGGKRAVVMQFSR 201

Query: 185 GCDKFCTFCVVPYTRGIEISRSLSQV-VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
           GC   C +C           RS      + AR   + GV  I L  +N  + R       
Sbjct: 202 GCPHLCNYCGQRGFWTRWRHRSPELFAREIARLYREQGVELINLADENPTSSR------- 254

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
           K   + L   ++E   +  +  T +        ++  +    V+     L +++  +  L
Sbjct: 255 KAWLAFLEAMIAENVPVQIVGSTRADDIVRDADILHLYRKAGVVR--WLLGMENTDEATL 312

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
             + +       R+ I  +R  R DI   + ++VGF  E   D       +      Q  
Sbjct: 313 ALIKKGGAKATDREAIRLLR--RHDILSMATWVVGFEEEKLSDLWRGFRQLLSYDPDQIQ 370

Query: 364 SFKYSPRLGTPGSNMLEQ---VDENVKA 388
           +   +P   TP   +      ++ +++ 
Sbjct: 371 ALYVTPHRWTPFFRIARDRQVIEADIRK 398


>gi|116251824|ref|YP_767662.1| methyltransferase [Rhizobium leguminosarum bv. viciae 3841]
 gi|115256472|emb|CAK07556.1| putative methyltransferase [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 589

 Score = 75.8 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 45/278 (16%), Positives = 97/278 (34%), Gaps = 20/278 (7%)

Query: 105 VAGCVAQAEGEEI---LRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFE 161
           V+GC++  +G+ +     R   +++  G +   RL  +L  A  G+     ++  +    
Sbjct: 127 VSGCLSMLDGKAVGLDACRDMGISMFAG-EAEGRLDMVLRDAAAGELKPLYNFMNDLPGI 185

Query: 162 RLSIVDG----GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI-EISRSLSQVVDEARK 216
             + V         R  G++       GC   C+FC +   +G     RS   V    R 
Sbjct: 186 GGTPVPFLPKDNIQRTLGLSTSFDAGRGCPYQCSFCTIINVQGRKSRFRSADDVEKLVRM 245

Query: 217 LIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDC 276
               G+ +  +   N    +            D L  L E  G+                
Sbjct: 246 NWAQGIHKFFITDDNFARNKDWEA------IFDRLIELKERDGIPLGLMIQVDTL-CHKI 298

Query: 277 LIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA-YEYRQIIDRIRSVRPDIAISSDF 335
                      +  + + +++ +   L +  +      EYR+++   ++    I   + +
Sbjct: 299 PNFIEKSRRAGVTRVFIGLENVNPDNLTAAKKNQNKITEYRKMLLAWKAQ--GIMTLAGY 356

Query: 336 IVGFPGETDDDFRATMDLV-DKIGYAQAFSFKYSPRLG 372
           I+GFP +T +  R  + ++ +++       F  +P  G
Sbjct: 357 ILGFPADTPESIRRDITIIQEELPLDVIEFFILTPLPG 394


>gi|281358044|ref|ZP_06244528.1| Radical SAM domain protein [Victivallis vadensis ATCC BAA-548]
 gi|281315417|gb|EFA99446.1| Radical SAM domain protein [Victivallis vadensis ATCC BAA-548]
          Length = 451

 Score = 75.8 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 63/338 (18%), Positives = 122/338 (36%), Gaps = 35/338 (10%)

Query: 48  FFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAG 107
              Q  E V + D+ DL+          A +   +  GR   + +   + G  + VV+ G
Sbjct: 46  LGDQHVEPVTTDDEPDLV----------AIQVYITNAGRAYAMADDYRRRG--VFVVLGG 93

Query: 108 CVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK-RVVDTDYSVEDKFERLSIV 166
               +   E L+ +    +V+GP  +   PE L   R G+ R + TD       + +  V
Sbjct: 94  LHPTSLPGEALQHADA--LVLGP-AHQAWPEFLRDFRAGRCRKIYTDN--CRSLDDIPPV 148

Query: 167 DGGYNRKRGVTAF--LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCE 224
                R+R       + +  GC + C FC              + V    R++       
Sbjct: 149 RRDLIRRRNYLVPNSIVVSRGCPQSCDFCYTRNFFAGGRQFYTAPVERTLREIAALPGRH 208

Query: 225 ITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL 284
           +  L  N+         G      +L    + ++G+ R+    +  R + D  +     +
Sbjct: 209 LFFLDDNLF--------GAPRFARELF---AGMEGMNRVFQGAATVRSLQDDSL-LEAAV 256

Query: 285 DVLMPYLHLPVQSGSDRILKSMNRRHTA-YEYRQIIDRIRSVRPDIAISSDFIVGFPGET 343
              +  L +  +S +   L + N+      EY   + R+      I +++ F+ G   + 
Sbjct: 257 RAGLRSLFIGFESLNPESLAACNKAINRIEEYALTVRRLHD--HGIMVNASFVFGLEADR 314

Query: 344 DDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
            + F  T++   + G   A     +P  GTP    +E+
Sbjct: 315 PEVFDRTVEWALETGIETATFHLATPYPGTPFFERMEK 352


>gi|319789422|ref|YP_004151055.1| Radical SAM domain protein [Thermovibrio ammonificans HB-1]
 gi|317113924|gb|ADU96414.1| Radical SAM domain protein [Thermovibrio ammonificans HB-1]
          Length = 560

 Score = 75.8 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 58/311 (18%), Positives = 107/311 (34%), Gaps = 63/311 (20%)

Query: 184 EGC--DKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQ-NVNAWR---- 236
            GC     C++C      G    RS+  +V E   L   GV    +  Q N+  ++    
Sbjct: 193 RGCERRHHCSYC-TEAFYGKPDERSVEGIVKEVEALYGEGVRYFRIGRQPNILGFKALPA 251

Query: 237 -GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM------SDCLIKAHGDLDVLMP 289
            G+          +L   +  +  +  L     +   +      S   ++A   LD    
Sbjct: 252 EGEFPKPNPKVIRELFERIRSVGEIKTLHIDNVNAGTIKAHPAESREALEAIARLDTEGD 311

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYE-------------YRQIIDRIRSVRPDIAISSDFI 336
                ++S    +++    +                  +++  + +  + P I    +F+
Sbjct: 312 VAPFGLESADPEVIRRNFLKVDPEGIKFAVKVVNEVGAFKERENGLYKLLPGI----NFL 367

Query: 337 VGFPGETDDDFRATMDLVDKIGYA------QAFSFKYSPRLGTPGSNMLEQVDENVKAER 390
           VG PGET   F+   + ++ I         +    +     GTP + M+++     K  R
Sbjct: 368 VGLPGETKKTFQKNREFLEAI-LDEGLLVRRVNIRQVMVFEGTPIAEMVKR--AKTKHRR 424

Query: 391 -LLCLQKKLREQQVSFNDAC---VGQII-EVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445
                ++ +REQ           VG +I EVL+E H  + G  +GR              
Sbjct: 425 EFEKFKEWVREQFDLPMMRRVFPVGTVIREVLLEAH--DGGHTLGR-------------- 468

Query: 446 NIGDI-IKVRI 455
            IG   + VRI
Sbjct: 469 QIGSYPVLVRI 479


>gi|39935559|ref|NP_947835.1| P-methylase [Rhodopseudomonas palustris CGA009]
 gi|39649412|emb|CAE27934.1| possible P-methylase [Rhodopseudomonas palustris CGA009]
          Length = 598

 Score = 75.8 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 50/281 (17%), Positives = 101/281 (35%), Gaps = 22/281 (7%)

Query: 105 VAGCVAQ---AEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFE 161
           V+GC+A     + +        V +  G +   R  ELL  A  G   +   Y+  +   
Sbjct: 128 VSGCIAMLPGIQPDLQEALDLGVTLYAG-ELEGRCDELLRDAAGG--ALKPLYNYLNDLP 184

Query: 162 RLSIVDGGYNRKRGVTAFLTIQ------EGCDKFCTFCVVPYTRGI-EISRSLSQVVDEA 214
            L  V      ++ +    ++Q       GC   C+FC +   +G     RS   +    
Sbjct: 185 CLEGVPTPVLPRKFLKGTFSLQTSFDAGRGCPYQCSFCTIINVQGRKSRGRSADDIERLV 244

Query: 215 RKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI-KGLVRLRYTTSHPRDM 273
           R  +  GV    +   N    +   +  ++   + L    +   +  ++L          
Sbjct: 245 RANMAQGVNWFFMTDDNFARNKDWEVILDR--LAALRREFAATGQKDIKLVIQVDTLCHK 302

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA-YEYRQIIDRIRSVRPDIAIS 332
            D  I+      V+     L ++S + + L S  +R     EYRQ++   +     +   
Sbjct: 303 IDGFIEKARAAGVVR--TFLGLESINPQNLASAKKRQNKITEYRQMLLAWKKA--GVITY 358

Query: 333 SDFIVGFPGETDDDFRATMDLV-DKIGYAQAFSFKYSPRLG 372
           + +I+GFP +T +     + ++  ++       F  +P  G
Sbjct: 359 AGYILGFPHDTPESIAEDIAIIQKELPLDILEFFCLTPLPG 399


>gi|302519850|ref|ZP_07272192.1| radical SAM family protein [Streptomyces sp. SPB78]
 gi|302428745|gb|EFL00561.1| radical SAM family protein [Streptomyces sp. SPB78]
          Length = 499

 Score = 75.8 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 47/206 (22%), Positives = 78/206 (37%), Gaps = 24/206 (11%)

Query: 183 QEGCDKFCTFCVVPYTRG---IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
             GC   C FC    +        +RS   +V E   L D           ++     + 
Sbjct: 228 SRGCPYDCGFCGAAVSANPDIKIRTRSPENIVAELEALHDEHKATAFRFVDDLFLGAARV 287

Query: 240 LDGEKCTFSDLL---YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQ 296
           +      F+D       + +  G    R    H  D    ++         +  + L ++
Sbjct: 288 IKPAMQAFTDHRIGERFVWDATG----RINVLHRADD--DMLDTLA--RNGLREVALGIE 339

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
           SGSDRIL+ M++R TA     +  R+      I +   FI+G+PGE  +D  AT+  +  
Sbjct: 340 SGSDRILRDMDKRITADMTESVTHRLLER--GINVKGYFILGYPGEQREDLDATVRHIHN 397

Query: 357 I--------GYAQAFSFKYSPRLGTP 374
           +        G  +A  F++ P  GTP
Sbjct: 398 LWDLADQNPGTFRASVFEFRPYPGTP 423


>gi|303245145|ref|ZP_07331459.1| Radical SAM domain protein [Methanothermococcus okinawensis IH1]
 gi|302484489|gb|EFL47439.1| Radical SAM domain protein [Methanothermococcus okinawensis IH1]
          Length = 523

 Score = 75.8 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 60/350 (17%), Positives = 124/350 (35%), Gaps = 66/350 (18%)

Query: 176 VTAFLTIQEGCDKF----CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQN 231
           + A +    GC +     C+FC  P   G  + R    +VDE ++L  NGV    +  Q 
Sbjct: 183 IIAEIETYRGCSRHISGGCSFCTEPRRFGSPVYRDEKDIVDEVKELYLNGVRYYRIGRQP 242

Query: 232 VNAWRGKGLDGEKCTFSDL-LYSLSEIKGLVR-------LRYTTSHPRDMSDCLIKAHGD 283
                 K  DGEK       + ++  +   +R       L    ++P  ++    ++   
Sbjct: 243 CIFSY-KAKDGEKDEVPKPNVEAIERLFKGIRNNIKPEVLHIDNANPAVIARHENESREI 301

Query: 284 LDVLMPY------LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV--------RPDI 329
             +L+ Y          V+S  + ++K  N   T  +  + +  +  +         P +
Sbjct: 302 AKILVKYCTGGNVAAFGVESFDENVIKKNNLLTTPEDVLKAVKILNEIGGSRSSGGLPHL 361

Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYA------QAFSFKYSPRLGTPGSNMLEQVD 383
               + + G  GET + F    + + +I Y       +    +  P  GT        + 
Sbjct: 362 LPGINLLFGLKGETKETFNINYNYLKQI-YDEGYMIRRINIRQVVPFFGT-------DIS 413

Query: 384 -ENVKA--ERLLCLQKKLREQQVSFNDACV------GQII-EVLIE-------------K 420
            ++VK   +R         + +   ++A +      G ++ +V +E             K
Sbjct: 414 VKDVKKANKRKKLFLSFKEKIRKEIDNAMLKRVIPKGTVLKDVFVEVMKKDSKNPSLSNK 473

Query: 421 HGKEKGKLVGR--SPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
             ++     GR    +   V +  K+  +   + V+IT     ++ G +V
Sbjct: 474 IKEKDALYFGRQFGSYPILVGIIGKDLKLRSFVDVKITGYGRRSITGRVV 523


>gi|293368829|ref|ZP_06615433.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Bacteroides ovatus SD CMC 3f]
 gi|292636134|gb|EFF54622.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Bacteroides ovatus SD CMC 3f]
          Length = 376

 Score = 75.8 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 53/233 (22%), Positives = 86/233 (36%), Gaps = 20/233 (8%)

Query: 186 CDKFCTFCVV-PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR---GKGLD 241
           C   C +C     TR     R +  +        +  + +  L G+++       G    
Sbjct: 11  CKTRCIYCDFYSTTRSELKPRYVQALCR------ELTMRKEYLKGEDIETIYFGGGTPSQ 64

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPR--DMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
            EK  F  +  ++ E  GL   +  T      D+S   ++    L      L + +Q+  
Sbjct: 65  LEKEDFEQIFDTIREHYGLNHCQEITLEANPDDLSQEYLEMLSSLP--FNRLSMGIQTFD 122

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
           D  LK + RRH A    + IDR R       IS D I G PGET + +   +     +  
Sbjct: 123 DATLKLLRRRHNARTAIEAIDRCRKADFQ-NISIDLIYGLPGETKERWENDLRQAISLNV 181

Query: 360 AQAFSFKYSPRLGTPGSNMLEQ-----VDENVKAERLLCLQKKLREQQVSFND 407
               ++       TP  NML+Q     VDE+   E    L + L++      +
Sbjct: 182 EHISAYHLIYEEDTPIYNMLKQHQISEVDEDSSLEFFTLLIEHLQKAGFEHYE 234


>gi|192291151|ref|YP_001991756.1| radical SAM domain protein [Rhodopseudomonas palustris TIE-1]
 gi|192284900|gb|ACF01281.1| Radical SAM domain protein [Rhodopseudomonas palustris TIE-1]
          Length = 598

 Score = 75.8 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 50/281 (17%), Positives = 101/281 (35%), Gaps = 22/281 (7%)

Query: 105 VAGCVAQ---AEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFE 161
           V+GC+A     + +        V +  G +   R  ELL  A  G   +   Y+  +   
Sbjct: 128 VSGCIAMLPGIQPDLQEALDLGVTLYAG-ELEGRCDELLRDAAGG--ALKPLYNYLNDLP 184

Query: 162 RLSIVDGGYNRKRGVTAFLTIQ------EGCDKFCTFCVVPYTRGI-EISRSLSQVVDEA 214
            L  V      ++ +    ++Q       GC   C+FC +   +G     RS   +    
Sbjct: 185 CLEGVPTPVLPRKFLKGTFSLQTSFDAGRGCPYQCSFCTIINVQGRKSRGRSADDIERLV 244

Query: 215 RKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI-KGLVRLRYTTSHPRDM 273
           R  +  GV    +   N    +   +  ++   + L    +   +  ++L          
Sbjct: 245 RANMAQGVNWFFMTDDNFARNKDWEVILDR--LAALRREFAATGQKDIKLVIQVDTLCHK 302

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA-YEYRQIIDRIRSVRPDIAIS 332
            D  I+      V+     L ++S + + L S  +R     EYRQ++   +     +   
Sbjct: 303 IDGFIEKARAAGVVR--TFLGLESINPQNLASAKKRQNKITEYRQMLLAWKKA--GVITY 358

Query: 333 SDFIVGFPGETDDDFRATMDLV-DKIGYAQAFSFKYSPRLG 372
           + +I+GFP +T +     + ++  ++       F  +P  G
Sbjct: 359 AGYILGFPHDTPESIAEDIAIIQKELPLDILEFFCLTPLPG 399


>gi|171186397|ref|YP_001795316.1| radical SAM domain-containing protein [Thermoproteus neutrophilus
           V24Sta]
 gi|170935609|gb|ACB40870.1| Radical SAM domain protein [Thermoproteus neutrophilus V24Sta]
          Length = 531

 Score = 75.8 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 62/348 (17%), Positives = 121/348 (34%), Gaps = 42/348 (12%)

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
           K ++ K G  ++V            E++ R  I  V  G      +  L++ A  GK + 
Sbjct: 145 KEAKAKNGLRVIVGGPAAWQWLYFPELVERWGIDTVFDGEGEKLIVG-LVKNAIEGKPLP 203

Query: 151 DTDYS-VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209
              Y  V++  +   I    Y    G+   + I  GC + C FC V           L +
Sbjct: 204 RYIYVGVQEAPDISEISTIKYPSVNGL---VEIGRGCPRGCAFCSVTL--RAMRWYPLDK 258

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSH 269
           + +E R     GV +  L    V  +   G++           +L  +      +   SH
Sbjct: 259 IEEELRVNARAGVIDGLLHADEVPLYGSAGVEPNPEKLI----ALHRLAKRYYRKVGWSH 314

Query: 270 PRDMS------------DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN----RRHTAY 313
              ++              L +   D         + +++GS R+ + +       +   
Sbjct: 315 TTLVAVYHGEKKMGRLFTKLSEIIIDEHQDWWGAQIGLETGSVRLARKIMPGKAAPYKID 374

Query: 314 EYRQIIDRIRSVRPDIA--ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK--YSP 369
           ++ +I+    +V  +I    +   IVG P E  +D   T++LV+++   ++      Y P
Sbjct: 375 QWHEIVTEAAAVMHEIRLIPAITLIVGLPDEQPEDVVETIELVERLRPYRSLIVPLFYVP 434

Query: 370 RLGTPGSN--MLEQV---DENVKAERLLCLQKKLREQQVSFNDACVGQ 412
                      L++V    E+V       L K +    + +    V +
Sbjct: 435 MSHVKSEKTGWLDKVNLYPEHV------DLLKVVARHSIHWAKDIVNR 476


>gi|322421522|ref|YP_004200745.1| cobalamin B12-binding domain-containing protein [Geobacter sp. M18]
 gi|320127909|gb|ADW15469.1| cobalamin B12-binding domain protein [Geobacter sp. M18]
          Length = 492

 Score = 75.8 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 41/247 (16%), Positives = 82/247 (33%), Gaps = 26/247 (10%)

Query: 183 QEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLD 241
             GC   C++C     R      S   + +  R L +  G+  I          R +   
Sbjct: 211 SRGCPYACSYCDRSVFRRSFRYNSAQYLYEHLRYLKERFGIRHINFYDDQFTFNRER--- 267

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
                  +   +L   + L            +   L+            + L +++G + 
Sbjct: 268 ------VEEFTALMTDRPLGMTFNCAVRAEHIDPELLVRMK--GAGCWMMSLGIETGDEE 319

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
           +L    +        Q I  I+     I      ++G PGE++   R +MD V  +    
Sbjct: 320 LLARHRQNADLDHLAQRIRMIKEA--GIRTKGLLMIGLPGESEASIRRSMDYVFSLPIDD 377

Query: 362 AFSFKYSPRLGTPGSNMLEQVDE-NVKAERLLCLQ----------KKLREQQVSFNDACV 410
               K++P  G+P  + + ++ E +   E++ C+           ++L E    F     
Sbjct: 378 FNLAKFTPFPGSPVYDNIHELGEFDEDWEKMDCMNFLFVTKGMTRERLEELFQEFYRNHF 437

Query: 411 GQIIEVL 417
            +  +VL
Sbjct: 438 -KRHKVL 443


>gi|117924931|ref|YP_865548.1| radical SAM protein [Magnetococcus sp. MC-1]
 gi|117608687|gb|ABK44142.1| Radical SAM domain protein [Magnetococcus sp. MC-1]
          Length = 490

 Score = 75.8 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 45/283 (15%), Positives = 92/283 (32%), Gaps = 27/283 (9%)

Query: 99  GDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVED 158
            +L +    C     GE   +   +V  +V    + ++  ++ R   G  V +   +  D
Sbjct: 107 PELFIPDTACDVVYRGEAEPQIVALVEAMV-INKHQQISNIIYRDGAGGSVENAMTTYLD 165

Query: 159 KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC--------VVPYTRGIEISRSLSQV 210
               L   D           ++    GC   C++C        V P    +   R +  V
Sbjct: 166 DLNALPFQDSTLYPNDSHAMYVISSRGCPYKCSYCSAGTNSRLVTPAGEKVIRKRDVRSV 225

Query: 211 VDEARKLIDNG-VCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSH 269
           +DE +  +      EI                  +   ++      +  GL    Y  + 
Sbjct: 226 LDEIKATLARRPFKEIFF--------YDDFFITGESWLAEFKRLYVKEIGL--PYYCLAF 275

Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM-NRRHTAYEYRQIIDRIRSVRPD 328
           P  +++ + K   +       + +  Q+ +    K +  R        + ++ +R     
Sbjct: 276 PPTINEKIAKDLAESG--CKGVLMGFQTANTEYKKRVLQRPEPEARVLRAVNLLRDA--G 331

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK--YSP 369
           I +S D I+  PGET +D   +++   +        F   Y P
Sbjct: 332 IMVSLDHILNLPGETREDIGLSLEFYVENKIDSLMVFFLNYYP 374


>gi|291612848|ref|YP_003523005.1| radical SAM domain protein [Sideroxydans lithotrophicus ES-1]
 gi|291582960|gb|ADE10618.1| Radical SAM domain protein [Sideroxydans lithotrophicus ES-1]
          Length = 538

 Score = 75.8 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 55/313 (17%), Positives = 102/313 (32%), Gaps = 38/313 (12%)

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVN-VVVG--------------PQ 131
             ++     ++   + +        + G  +L   P ++ + +G              PQ
Sbjct: 87  AVDMARYIRQKRPGIKIAFGNVHVSSIGAPLLEHFPEIDYLCIGEGEGAMLDLADGKPPQ 146

Query: 132 TYY----RLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRK-----RGVTAFLTI 182
             Y    R  E +      +R+++ D      +E+L      Y+       +   A +  
Sbjct: 147 DIYNLVYRDGERIVSNPRRQRILNLDELPFPAYEKLQGFPDAYHLPLFSYEKKHGATMIT 206

Query: 183 QEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLD 241
             GC   C+FC       +    S   + D  + L D  GV  I        A       
Sbjct: 207 SRGCPYTCSFCDRTVFERLYKVNSAQYIYDHMKHLRDRFGVYHINFYDDLFTAQ------ 260

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
             K    DL   L   K L             SD +++       LM  + + ++S    
Sbjct: 261 --KKRVFDLCDLLIA-KPLGMQFNCAIRTGHTSDEMLQRLKQAGALM--VSMGIESADPA 315

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
           +++      T     + + +I +    +     FI G PGET +  + T D +  +   +
Sbjct: 316 MMERHKAGVTLEAVTKTVQQIHAA--GLRAKGLFIFGMPGETPETVKTTSDFILSLDLDE 373

Query: 362 AFSFKYSPRLGTP 374
               K+SP  G P
Sbjct: 374 MNMTKFSPLYGAP 386


>gi|115526761|ref|YP_783672.1| radical SAM domain-containing protein [Rhodopseudomonas palustris
           BisA53]
 gi|115520708|gb|ABJ08692.1| Radical SAM domain protein [Rhodopseudomonas palustris BisA53]
          Length = 608

 Score = 75.8 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 40/245 (16%), Positives = 80/245 (32%), Gaps = 12/245 (4%)

Query: 135 RLPELLERARFGKRVVD----TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190
           R  +LL  A  G+         D    +      +      R   +        GC   C
Sbjct: 170 RCDDLLRDAAAGRLKPLYNYLNDLPSLEGAPSPILPKQFLQRTYQLQTSFDAGRGCPYQC 229

Query: 191 TFCVVPYTRGI-EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSD 249
           +FC +   +G     RS   +    R+ +  GV    +   N    R K  +      + 
Sbjct: 230 SFCTIINVQGRKSRGRSADDIERLVRENLAQGVFWFFMTDDNFA--RNKDWEAILDRLAK 287

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
           L   +++  G                           +   + L ++S + + L + N+R
Sbjct: 288 LRGEIAQEGGRDIKLVIQVDTLCHKIDGFIDKAKAAGVAR-VFLGLESINPQSLAAANKR 346

Query: 310 HTA-YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD-KIGYAQAFSFKY 367
                EYRQ++   ++    +   + +I+GFP +T       + ++  ++       F  
Sbjct: 347 QNKITEYRQMLLAWKNA--GVLTYAGYILGFPHDTPQSIAEDIAIIQNELPLDILEFFCL 404

Query: 368 SPRLG 372
           +P  G
Sbjct: 405 TPLPG 409


>gi|193215003|ref|YP_001996202.1| radical SAM domain-containing protein [Chloroherpeton thalassium
           ATCC 35110]
 gi|193088480|gb|ACF13755.1| Radical SAM domain protein [Chloroherpeton thalassium ATCC 35110]
          Length = 527

 Score = 75.8 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 53/309 (17%), Positives = 97/309 (31%), Gaps = 28/309 (9%)

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             + R   + +   K G    VV+ G       +E     P  + VV  +  +    LL+
Sbjct: 119 MNVNRAYEIADEFRKHGK--KVVLGGVHVSFNYQE---AKPHADCVVIGEAEHLWETLLQ 173

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNR-----KRGV-----TAFLTIQEGCDKFCT 191
               G+  +   Y+       L      Y R     KRG      +  + +  GC   C 
Sbjct: 174 DVANGE--LKPFYNSRHFPPVLEAPTLDYQRIFNASKRGKVDTTKSIPIYLTRGCPHTCN 231

Query: 192 FCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDL 250
           FCV P   G     +S   V  +               G N   W     +        L
Sbjct: 232 FCVTPNFIGRLYRIQSAETVRQQIEDAKKAFFKHY---GTNKKPWFMLTDENLGVNKKKL 288

Query: 251 LYSLSEIKGLVRLRYTTSHPRDM--SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
           L  L ++     + Y+T         +  ++   +   +M    +  +S +   L   N+
Sbjct: 289 LEVL-KVVKECNINYSTFISIHFLEDEETVRHLAESGCVM--ALVGFESVNQERLALYNK 345

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
           +    +Y +I++  R     + +  +F+V    +   D  AT   + +           +
Sbjct: 346 KGEVQKYSKIVEHCRKA--GLNVQGNFLVNPELDDYHDMDATETFIKENHIMMPIYSLIT 403

Query: 369 PRLGTPGSN 377
           P  GT    
Sbjct: 404 PYPGTELYK 412


>gi|332158272|ref|YP_004423551.1| hypothetical protein PNA2_0631 [Pyrococcus sp. NA2]
 gi|331033735|gb|AEC51547.1| hypothetical protein PNA2_0631 [Pyrococcus sp. NA2]
          Length = 580

 Score = 75.4 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 63/363 (17%), Positives = 117/363 (32%), Gaps = 40/363 (11%)

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE-RARF 145
           I+  K  +I  G   +        +   +E+     I + VV       L + L  R   
Sbjct: 109 IKPYKGVKILGGPAFMGSAKAGGIKVTIKELKFAEEIFDHVVYGDLEAFLFDYLSGRDVD 168

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK-----FCTFCVVPYTRG 200
             R    D   +       +V         V A +  Q GC K      C+FC  P    
Sbjct: 169 PFRFRSYDELRDYALLGAEVVKQFPGYPEFVLAEIETQRGCPKAMGIGGCSFCTEPVRYP 228

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
           +  +R    VVDE + L   G+    +  Q+         +G     +     + ++   
Sbjct: 229 VVENREQKDVVDEVKTLYSLGIRHFRIGRQSCIFSYKAKPNGRVPIPN--PEEVEKLFRG 286

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLD--------VLMPYLH------LPVQSGSDRILKSM 306
           VR     +    + +       +           ++ Y          +++   ++ +  
Sbjct: 287 VRNAAPNAKTIHVDNANPAVIANYPDEAKRIAKAIIKYGTPGNVVAFGLETADPKVARLN 346

Query: 307 NRRHTAYEYRQIIDRIRSV--------RPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           N   T  E  + +  I  V         P +    + I G PGET   +  T + + KI 
Sbjct: 347 NLNATPEETYEAVRIINEVGARRGYNGLPWLLPGINIIFGLPGETKRTYELTYEFLKKIL 406

Query: 359 YAQAFSFKYSPR-----LGTPGSNMLEQVDENVKAERLLCLQKKLR-EQQVSFNDACVGQ 412
                  + + R      GTP  NM ++V    K E+   L K  R + +   +   + +
Sbjct: 407 DDGLMIRRINIRQVVVFPGTPLWNMRDKV----KTEKHKDLIKHYRHKIRHEIDLPMLKR 462

Query: 413 IIE 415
           ++ 
Sbjct: 463 VVP 465


>gi|299139626|ref|ZP_07032800.1| Radical SAM domain protein [Acidobacterium sp. MP5ACTX8]
 gi|298598554|gb|EFI54718.1| Radical SAM domain protein [Acidobacterium sp. MP5ACTX8]
          Length = 497

 Score = 75.4 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 47/250 (18%), Positives = 89/250 (35%), Gaps = 24/250 (9%)

Query: 125 NVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQ- 183
           ++V  PQ   + P   E +R  + ++D           L      + +  G  +   +  
Sbjct: 164 SLVQNPQRLAKNPSWSELSRPSRDLID-----------LEPYRAAWTKAHGYFSTNMVSS 212

Query: 184 EGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
            GC   C +C  P +      R  + V +E ++L      +    G +V A         
Sbjct: 213 RGCPYRCNWCAKPISGNKFHLRPAATVAEEMKQLKREAGVQHIWFGDDVFAL-------N 265

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
           +    +    +++    V  +   S    MS+  ++A          + + V+SGS  +L
Sbjct: 266 QHWMQEFAEEVTKRDAAVPFKI-QSRADLMSEQTVQALKAAG--CAEVWMGVESGSQTVL 322

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
            +M++         I+ R R     I       +G+PGET  + + T+D V +       
Sbjct: 323 NAMDKG--LSLPAVIVARRRLKVAGIRACFFLQLGYPGETWTELQETIDFVRETRPDDIG 380

Query: 364 SFKYSPRLGT 373
                P  GT
Sbjct: 381 VSFSYPLPGT 390


>gi|15677089|ref|NP_274241.1| lipoyl synthase [Neisseria meningitidis MC58]
 gi|23813620|sp|Q9JZA5|LIPA_NEIMB RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|7226454|gb|AAF41598.1| lipoic acid synthetase [Neisseria meningitidis MC58]
 gi|316985067|gb|EFV64020.1| lipoic acid synthetase [Neisseria meningitidis H44/76]
 gi|325128245|gb|EGC51130.1| lipoic acid synthetase [Neisseria meningitidis N1568]
 gi|325134537|gb|EGC57182.1| lipoic acid synthetase [Neisseria meningitidis M13399]
 gi|325140554|gb|EGC63075.1| lipoic acid synthetase [Neisseria meningitidis CU385]
 gi|325144639|gb|EGC66938.1| lipoic acid synthetase [Neisseria meningitidis M01-240013]
 gi|325200154|gb|ADY95609.1| lipoic acid synthetase [Neisseria meningitidis H44/76]
 gi|325206008|gb|ADZ01461.1| lipoic acid synthetase [Neisseria meningitidis M04-240196]
          Length = 327

 Score = 75.4 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 42/250 (16%), Positives = 84/250 (33%), Gaps = 23/250 (9%)

Query: 127 VVGPQTYYRLPELLERARFGKRVVDT-----DYSVEDKFERLSIVDGGYNRKRGVTAFLT 181
           VV  Q   + PE +      ++  +      +  +    E  S  + G    +G   F+ 
Sbjct: 28  VVPLQEKLKKPEWIRAKLPSRKFFEIKDILREQKMHTVCEEASCPNIGECFSKGTATFMI 87

Query: 182 IQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD 241
           + + C + C FC V + R   +     +  + A  +    +  + +   +    R    D
Sbjct: 88  MGDICTRRCPFCDVGHGRPNML--DPDEPRNLAESVKAMNLRYVVITSVD----RDDLRD 141

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV-LMPY---LHLPVQS 297
           G    F+D + ++ E     ++       R   D  +K   +    +M +    H  +  
Sbjct: 142 GGAQHFADCIKAIRETSPNTKIEILVPDFRGRLDIALKILAETPPDVMNHNLETHPSLY- 200

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
                 +             ++ R + + P I   S  +VG  GETD+D R  M  +   
Sbjct: 201 ------RKARPGANYQHSLDLLKRYKEMMPHIPTKSGIMVGL-GETDEDVREIMRDMRAH 253

Query: 358 GYAQAFSFKY 367
                   +Y
Sbjct: 254 NIEMITIGQY 263


>gi|325198347|gb|ADY93803.1| lipoic acid synthetase [Neisseria meningitidis G2136]
          Length = 327

 Score = 75.4 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 42/250 (16%), Positives = 84/250 (33%), Gaps = 23/250 (9%)

Query: 127 VVGPQTYYRLPELLERARFGKRVVDT-----DYSVEDKFERLSIVDGGYNRKRGVTAFLT 181
           VV  Q   + PE +      ++  +      +  +    E  S  + G    +G   F+ 
Sbjct: 28  VVPLQEKLKKPEWIRAKLPSRKFFEIKDILREQKMHTVCEEASCPNIGECFSKGTATFMI 87

Query: 182 IQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD 241
           + + C + C FC V + R   +     +  + A  +    +  + +   +    R    D
Sbjct: 88  MGDICTRRCPFCDVGHGRPNML--DPDEPRNLAESVKAMNLRYVVITSVD----RDDLRD 141

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV-LMPY---LHLPVQS 297
           G    F+D + ++ E     ++       R   D  +K   +    +M +    H  +  
Sbjct: 142 GGAQHFADCIKAIRETSPNTKIEILVPDFRGRLDIALKILAETPPDVMNHNLETHPSLY- 200

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
                 +             ++ R + + P I   S  +VG  GETD+D R  M  +   
Sbjct: 201 ------RKARPGANYQHSLDLLKRYKEMMPHIPTKSGIMVGL-GETDEDVREIMRDMRAH 253

Query: 358 GYAQAFSFKY 367
                   +Y
Sbjct: 254 NIEMITIGQY 263


>gi|240117927|ref|ZP_04731989.1| lipoyl synthase [Neisseria gonorrhoeae PID1]
 gi|268603641|ref|ZP_06137808.1| lipoyl synthase [Neisseria gonorrhoeae PID1]
 gi|268587772|gb|EEZ52448.1| lipoyl synthase [Neisseria gonorrhoeae PID1]
          Length = 327

 Score = 75.4 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 42/250 (16%), Positives = 84/250 (33%), Gaps = 23/250 (9%)

Query: 127 VVGPQTYYRLPELLERARFGKRVVDT-----DYSVEDKFERLSIVDGGYNRKRGVTAFLT 181
           VV  Q   + PE +      ++  +      +  +    E  S  + G    +G   F+ 
Sbjct: 28  VVPLQEKLKKPEWIRAKLPSRKFFEIKDILREQKMHTVCEEASCPNIGECFGKGTATFMI 87

Query: 182 IQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD 241
           + + C + C FC V + R   +     +  + A  +    +  + +   +    R    D
Sbjct: 88  MGDICTRRCPFCDVGHGRPNML--DPDEPKNLAESVKAMNLRYVVITSVD----RDDLRD 141

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV-LMPY---LHLPVQS 297
           G    F+D + ++ E     ++       R   D  +K   +    +M +    H  +  
Sbjct: 142 GGAQHFADCIKAIRETSPNTKIEILVPDFRGRLDIALKILAETPPDVMNHNLETHPSLY- 200

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
                 +             ++ R + + P I   S  +VG  GETD+D R  M  +   
Sbjct: 201 ------RKARPGANYQHSLDLLKRYKEMMPHIPTKSGIMVGL-GETDEDVREIMRDMRAH 253

Query: 358 GYAQAFSFKY 367
                   +Y
Sbjct: 254 NIEMITIGQY 263


>gi|296125562|ref|YP_003632814.1| Radical SAM domain protein [Brachyspira murdochii DSM 12563]
 gi|296017378|gb|ADG70615.1| Radical SAM domain protein [Brachyspira murdochii DSM 12563]
          Length = 486

 Score = 75.4 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 54/324 (16%), Positives = 110/324 (33%), Gaps = 37/324 (11%)

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER- 142
           + +   + N    +  +++VV+AG    A  EE +    +  ++ G    + L  L+E  
Sbjct: 94  IYKAWKIVNDLKAKYPNMIVVIAGDHVTAMPEETMNNCKVDYLLTGGDYDFLLLNLIEYL 153

Query: 143 -----------ARFGKRVVDTDY-SVEDKFERLSIVDGGY-----------NRKRGVTAF 179
                       R    + +T +  +    + L  +D              N KR    +
Sbjct: 154 NGKAQLEKGIYYRENNNIKNTGFFELRHDLKSLPFIDRDLTQWQRYAYDNGNFKRIPGTY 213

Query: 180 LTIQEGC-DKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK 238
           +     C    CTFC          +R+   VVDE   L +     I  +  +   +  K
Sbjct: 214 IMAGRDCWHHRCTFCSWTGIYTNFRARTAENVVDEVEFLYNK--YNIREIMDDTGCFPVK 271

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
               + C F        ++     +R+      +    L+K          +L   ++S 
Sbjct: 272 KWLNDFCNFMIDKKLNKKVNIDCNMRFGA--CNEDEYRLMK-----KAGFRFLLFGLESA 324

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           S   L  + + +   E              ++     ++G+P ET++D   T +L  K+ 
Sbjct: 325 SQNTLDRLKKGNKVEEILPSCKAASDA--GLSPHVTVMLGYPWETEEDIEKTYELTKKLL 382

Query: 359 Y-AQAFSFKYSPRLGTPGSNMLEQ 381
               A + + +  +  PG+ +  Q
Sbjct: 383 LKGYAKTMQATIIIPYPGTELFNQ 406


>gi|316934354|ref|YP_004109336.1| Radical SAM domain-containing protein [Rhodopseudomonas palustris
           DX-1]
 gi|315602068|gb|ADU44603.1| Radical SAM domain protein [Rhodopseudomonas palustris DX-1]
          Length = 598

 Score = 75.4 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 49/281 (17%), Positives = 100/281 (35%), Gaps = 22/281 (7%)

Query: 105 VAGCVAQ---AEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFE 161
           V+GC+A     + +        V +  G +   R  ELL  A  G   +   Y+  +   
Sbjct: 128 VSGCIAMLPGIQPDLQQALDLGVTLYAG-ELEGRCDELLRDAAGG--ALKPLYNYLNDLP 184

Query: 162 RLSIVDGGYNRKRGVTAFLTIQ------EGCDKFCTFCVVPYTRGI-EISRSLSQVVDEA 214
            L         ++ +    ++Q       GC   C+FC +   +G     RS   +    
Sbjct: 185 CLEGAPTPVLPRKFLKGTFSLQTSFDAGRGCPYQCSFCTIINVQGRKSRGRSADDIERLV 244

Query: 215 RKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI-KGLVRLRYTTSHPRDM 273
           R  +  GV    +   N    +   +  ++   + L    +   +  ++L          
Sbjct: 245 RANMAQGVNWFFMTDDNFARNKDWEVILDR--LAALRREFAATGQKDIKLVIQVDTLCHK 302

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA-YEYRQIIDRIRSVRPDIAIS 332
            D  I+      V+     L ++S + + L S  +R     EYRQ++   +     +   
Sbjct: 303 IDGFIEKARAAGVVR--TFLGLESINPQNLASAKKRQNKITEYRQMLLAWKKA--GVITY 358

Query: 333 SDFIVGFPGETDDDFRATMDLV-DKIGYAQAFSFKYSPRLG 372
           + +I+GFP +T +     + ++  ++       F  +P  G
Sbjct: 359 AGYILGFPHDTPESIAEDIAIIQKELPLDILEFFCLTPLPG 399


>gi|260881019|ref|ZP_05403401.2| radical SAM domain protein [Mitsuokella multacida DSM 20544]
 gi|260850193|gb|EEX70200.1| radical SAM domain protein [Mitsuokella multacida DSM 20544]
          Length = 613

 Score = 75.4 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 54/309 (17%), Positives = 108/309 (34%), Gaps = 42/309 (13%)

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +  ++++         D ++V  G     +    L   P+V+ VV  +    +  L+ER 
Sbjct: 94  IEMVKDILRLLPAALPDTIIVCGGPEVSYDTAAFLEEFPMVDFVVRGEGEEAVLRLIERL 153

Query: 144 RFG----------------------KRVVDTDYSVEDKFERLSIVDGGYNRK-----RGV 176
           R                        +     D S        S V   Y  +     +  
Sbjct: 154 RAVGFAKARAAEVSRAGSLPGIAMRREDGSIDESTAVTVADFSEVPFAYREEEMEPIKER 213

Query: 177 TAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR 236
             +     GC   C +C+   T G      L++V  E    + + V ++  + +  NA  
Sbjct: 214 ILYYETSRGCPFSCAYCLSCATAG-VRFLPLARVFRELDFFVRHDVRQVKFVDRTFNA-- 270

Query: 237 GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD-MSDCLIKAHGDLDVLMPYLHLPV 295
                 +K  F  +L  L ++   VR  +      D + + ++     L      L + +
Sbjct: 271 ------KKSHFLPILQYLVDLPDSVRTNFHFEVAIDYLDEEVLATLARLPRGRVQLEIGI 324

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSV--RPDIAISSDFIVGFPGETDDDFRATMDL 353
           QS +++ L++++R      + QI   IR +    ++ +  D I+G PGE    F  + + 
Sbjct: 325 QSTNEKTLQAVSR---INHWEQIASHIRRILSFHNMHLHVDLIIGLPGEGMASFAQSFND 381

Query: 354 VDKIGYAQA 362
           V  +     
Sbjct: 382 VYALQADML 390


>gi|332970324|gb|EGK09316.1| lipoic acid synthetase [Kingella kingae ATCC 23330]
          Length = 331

 Score = 75.4 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 45/248 (18%), Positives = 87/248 (35%), Gaps = 18/248 (7%)

Query: 127 VVGPQTYYRLPELL-ERARFGKRVVDT-----DYSVEDKFERLSIVDGGYNRKRGVTAFL 180
           VV  +   + PE +  +   GK+  +      +  +    E  S  + G     G   F+
Sbjct: 30  VVPLEEKLKKPEWIRAKIPTGKKFFEIKNILREQKMHTVCEEASCPNIGECFSHGTATFM 89

Query: 181 TIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL 240
            + + C + C FC V + R   ++    +  + A  +    +  + +   +    R    
Sbjct: 90  IMGDICTRRCPFCDVGHGRPNALN--PEEPKNLAESVAAMKLKYVVITSVD----RDDLR 143

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV-LMPYLHLPVQSGS 299
           DG    F+D + ++ E     ++       R   D  +         +M +         
Sbjct: 144 DGGAQHFADCINAIRESSPNTKIEILVPDFRGRLDIALDILAKNPPDVMNHNLETH---- 199

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
            R+ K            +++ R R + P I   S  +VG  GETDD+ R  M  + + G 
Sbjct: 200 PRLYKQARPGADYKHSLELLRRFREMMPHIPTKSGIMVGL-GETDDEVREIMRDMREHGI 258

Query: 360 AQAFSFKY 367
                 +Y
Sbjct: 259 EMITVGQY 266


>gi|302390015|ref|YP_003825836.1| cobalamin B12-binding domain protein [Thermosediminibacter oceani
           DSM 16646]
 gi|302200643|gb|ADL08213.1| cobalamin B12-binding domain protein [Thermosediminibacter oceani
           DSM 16646]
          Length = 563

 Score = 75.4 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 59/330 (17%), Positives = 114/330 (34%), Gaps = 43/330 (13%)

Query: 65  IVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIV 124
           I+LN+  +   A       +  +  L  +  K    + VV+ G     +  EIL+R   V
Sbjct: 49  IILNSPQMV--AFSCYIWNIDYVLYLAENLKKVSPKITVVLGGPEVSHDAGEILKRCDYV 106

Query: 125 NVVVGPQTYYRLPELLERAR---------------FGKRVVDTDYSVEDKFERLSIVDGG 169
           + V+  +  Y     L+  R                G+  V+      D  E     D  
Sbjct: 107 DYVIIGEGEYTFKAFLDAFRGNGLFSEIPGIAYRRDGRLYVNPQAGYVDLNEVPFSYDEQ 166

Query: 170 YNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLG 229
            +    +  + T   GC   C FC+         + SL +V  +    +  GV  + L+ 
Sbjct: 167 EDLSHRLVYYET-SRGCPFNCAFCL-SSLDKAVRTASLEKVERDLSFFVRKGVDTVKLVD 224

Query: 230 QNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIK------AHGD 283
           ++ N               D   +++ +  + RL   T    +++  L+         G 
Sbjct: 225 RSFN--------------CDTERAIAILDIIRRLGGNTVFHCEINPELVNDRFLKGLEGI 270

Query: 284 LDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGET 343
            D L     + +Q+ +   LK ++R        + I+R+++    + +  D I G P + 
Sbjct: 271 EDRLR--FEVGIQTTNPESLKEISRNPDVERALRGIERLKAA--GVKLHVDLIAGLPYDD 326

Query: 344 DDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
            + F    D V ++   +          GT
Sbjct: 327 FESFSRAFDDVYRLEPDEIQLGFLKLLKGT 356


>gi|283852016|ref|ZP_06369291.1| Radical SAM domain protein [Desulfovibrio sp. FW1012B]
 gi|283572566|gb|EFC20551.1| Radical SAM domain protein [Desulfovibrio sp. FW1012B]
          Length = 477

 Score = 75.4 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 58/303 (19%), Positives = 102/303 (33%), Gaps = 48/303 (15%)

Query: 103 VVVAGCVAQAEGEEILRRSPIVNVVV------------------------GPQTYYRLPE 138
           +VV G +  A  E++    P V+ V+                         P+ ++R PE
Sbjct: 95  LVVGGPLPSALPEQMF-EHPAVDFVICGRGEGPIRQLCDRLRDGRNDFDTTPRLWWRTPE 153

Query: 139 LLER---ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
            + +   AR  +RV D         + + I +              +  GC   C+FC  
Sbjct: 154 GIRQSSAARHSERVNDLPPLPYLNKDVIDIWNYINPETHAFNYSTAV--GCVGRCSFCYW 211

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
             +       S         +L   G     L  +NV         G   T   +   L+
Sbjct: 212 HDSYT----YSWFDNQRVVDELESLGR---QLSLRNVTFDDPTFFVGRSRTMDLVERLLA 264

Query: 256 -EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
            E++   R        +  +   +            +H+ ++SGS RIL  M++  T  +
Sbjct: 265 SEVRFKWRANARVDTFKPFTIEDVHTMERSG--CHLIHVGMESGSQRILDLMHKNITVDD 322

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG-----YAQAFSFKYSP 369
              +  +       I +    I+G PGET DD R + +L+ +IG     +       + P
Sbjct: 323 ALDMARKF--ATSSIHLRCHLIIGIPGETIDDIRRSGELITEIGRIKKEFDYT-VNIFIP 379

Query: 370 RLG 372
             G
Sbjct: 380 YPG 382


>gi|118579357|ref|YP_900607.1| radical SAM domain-containing protein [Pelobacter propionicus DSM
           2379]
 gi|118502067|gb|ABK98549.1| Radical SAM domain protein [Pelobacter propionicus DSM 2379]
          Length = 451

 Score = 75.4 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 65/342 (19%), Positives = 118/342 (34%), Gaps = 36/342 (10%)

Query: 63  DLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSP 122
           ++ +LNT             ++  ++N+ ++ I+   D  +V+ G       E+IL  + 
Sbjct: 68  NVNLLNT-----------EYYIHNVKNMVDA-IRTVSDARIVLGGAGFSLIPEQILEETG 115

Query: 123 IVNVVVGPQTYYRLPELLERARFG----KRVVDTDYSVEDKFERLSIVDGGYNR---KRG 175
               V+G      +    + A  G    KR++     +       ++ D G  R   + G
Sbjct: 116 ADFGVIGEGEQL-MVAFADGAERGIYPQKRLLGPASPLSGDDIGSALYDEGLTRFYLQSG 174

Query: 176 VTAFLTIQEGCDKFCTFCVVPYTRGI-EISRSLSQVVDEARKLIDNGVCEITLLGQNVNA 234
             A +  + GC   C +C  P   G    SR   +VVD+   L D           +V  
Sbjct: 175 NIASIQTKRGCSHHCVYCTYPLLEGSCLRSRDPVKVVDDIELLRDKHGTGYIFFVDSV-- 232

Query: 235 WRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP 294
                 D        +   L     +    Y    P +++D +++             + 
Sbjct: 233 ----FNDDSGIYLGVVDEMLHRKVNIPWTGY--IKPGNLNDEIVERMKSTG--FASAEVG 284

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
             +  D  L  M +  T  + R+  D +   R  IA    F+ G PGET++  +  +  +
Sbjct: 285 SDAACDSTLARMGKDFTFADIRECNDLLT--RHGIATCHFFMFGGPGETEETVKEGIANI 342

Query: 355 DKIGYAQAFSFKYSP-RLGTPGSNMLEQVDENVKAERLLCLQ 395
             +     F F        TP + +   V E V       LQ
Sbjct: 343 LSLKKCVIFIFMGIRLLPNTPLAKIA--VREGVIDSESDMLQ 382


>gi|95930979|ref|ZP_01313708.1| Radical SAM [Desulfuromonas acetoxidans DSM 684]
 gi|95132988|gb|EAT14658.1| Radical SAM [Desulfuromonas acetoxidans DSM 684]
          Length = 573

 Score = 75.4 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 50/305 (16%), Positives = 95/305 (31%), Gaps = 33/305 (10%)

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
            L ++       + +++ G     E   + +  P +N ++  +    L  LL   R G++
Sbjct: 77  ELVDALHVAAPQIRIILGGPEVSYETASLWQHHPGINAIIRGEGEQPLRALLHSWRTGEQ 136

Query: 149 VVDTDYSVEDK------------FERLSIVDGGYNR-----KRGVTAFLTIQEGCDKFCT 191
                   +               E L  +   +       +RG   + T   GC   C 
Sbjct: 137 PQLIPGIEQRNGEQIIDGGDGPLLESLDSIPSPFESGDMDCERGFVYYET-SRGCPYSCA 195

Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLL 251
           FC +        S S+ ++  +   L+   + ++ L+ +  N            +F    
Sbjct: 196 FC-MSALDTRVRSFSIERIERDLLWLMKREIPKVKLVDRTFN--YDPRRAYHIFSFILQH 252

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
              S                + +  L+K   D    M    + +QS     LK++ R   
Sbjct: 253 NRCSH----FHFEIGAHLLDEATLELLKTVPDD---MFQFEIGIQSTLPETLKTIKRH-- 303

Query: 312 AYEYRQIIDRIRSVRP--DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369
               +Q+ D IR++     + +  D I G PGE         D V  +            
Sbjct: 304 -APQQQLFDNIRALIETTQVHLHLDLIAGLPGEDMAQMVKGFDQVMALNPDHLQIETVKL 362

Query: 370 RLGTP 374
             G P
Sbjct: 363 LPGAP 367


>gi|119358230|ref|YP_912874.1| radical SAM domain-containing protein [Chlorobium phaeobacteroides
           DSM 266]
 gi|119355579|gb|ABL66450.1| Radical SAM domain protein [Chlorobium phaeobacteroides DSM 266]
          Length = 480

 Score = 75.4 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 42/256 (16%), Positives = 81/256 (31%), Gaps = 18/256 (7%)

Query: 122 PIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLT 181
           P  +++V  +      ++L   + G    D              V      K        
Sbjct: 131 PHADILVHGEADDLWRQVLLDLKTGTMHADYRSDNFPDMGIPRPVSKTMLLKNRYFTTNL 190

Query: 182 IQ--EGCDKFCTFCVVPYTRGI-EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK 238
           IQ   GC   C FC V    G     R+++ +V E  +   +       +  ++NA    
Sbjct: 191 IQTGRGCPYQCDFCNVHVLNGHTLRRRNIADIVAEVNRFKLHDKRIFFFVDDSINA---- 246

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
               +     +L   L  I   +      +        L++           L + ++S 
Sbjct: 247 ----DPVYARELFRQL--IPCGINWFGQATTTLGQQPELLETFARSG--CQALLVGIESI 298

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVR-PDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
             +  ++  +        ++   IR++R   I++   FI G  G+T D   A +D + + 
Sbjct: 299 EPKSREAHRKTQNRAT--ELSSAIRNIRNAGISLYGSFIYGLDGDTLDTPSAILDFISET 356

Query: 358 GYAQAFSFKYSPRLGT 373
                      P  GT
Sbjct: 357 KLDVPGINILRPIPGT 372


>gi|108757394|ref|YP_632712.1| radical SAM domain-containing protein [Myxococcus xanthus DK 1622]
 gi|108461274|gb|ABF86459.1| radical SAM domain protein [Myxococcus xanthus DK 1622]
          Length = 489

 Score = 75.4 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 50/258 (19%), Positives = 93/258 (36%), Gaps = 20/258 (7%)

Query: 125 NVVVGPQTYYRLPELLERARFGK------RVVDTDYSVEDKFERLSIVDGGYNRKRGVTA 178
           + V+  +    +P L+E    G+      R      ++      L        R  G+ A
Sbjct: 123 DAVITGEPEANVPALIEDFEKGQLQPRYQRPPLGPAAIRPYRYDLIDFTHNKLRLPGIEA 182

Query: 179 FLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK 238
                 GC   C FCV+         R ++ V+DE ++ +      + L+  +   +   
Sbjct: 183 ----SRGCPFSCNFCVLT-GNERYRYRPVAHVIDEIQQHMHWNPNFMGLM-DDAFVFLDN 236

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
            L G      +L  +L  +K       T +  +D S  L+K          Y++  ++S 
Sbjct: 237 NLGGSPKYLRELCEALIPLKKTWGCALTFNVLKDES--LVKLMAKAG--CRYVYTGLESL 292

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVR-PDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
           +   +K+MN+          +  IR V    I +S   IVG  G+T+       + +  +
Sbjct: 293 NPDSIKAMNKGQNKLSEVDAV--IRRVFSAGILLSFGLIVGSDGDTNAYLEKLPEYLSDL 350

Query: 358 G-YAQAFSFKYSPRLGTP 374
             ++  F     P   TP
Sbjct: 351 QYFSVTFLGIVCPYPETP 368


>gi|46202017|ref|ZP_00053952.2| COG1032: Fe-S oxidoreductase [Magnetospirillum magnetotacticum
           MS-1]
          Length = 415

 Score = 75.4 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 51/315 (16%), Positives = 92/315 (29%), Gaps = 41/315 (13%)

Query: 97  EGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR-------- 148
               + VVV G    A  E  L   P +++ +  +      E L R   G+         
Sbjct: 1   MDPTITVVVGGAHVNALTEHTLLGRPEIDLAILGEGELTFSEFLTRIDAGEDWCQIQGIA 60

Query: 149 -------VVDTDYSVEDKFERLSIVDGG--------YNRKRGVT-----AFLTIQEGCDK 188
                  V      + +  + L               N +          F+    GC K
Sbjct: 61  FARDNDLVRTESRPLIENLDDLPFPARHLLPMELYFSNHENPYVYRNRHTFMLASRGCPK 120

Query: 189 FCTFCVVPYTRG-IEISRSLSQVVDEARKLI-DNGVCEITLLGQNVNAWRGKGLDGEKCT 246
            C +C +           S   VV +   L+ D GV EI  +  N+ A         K  
Sbjct: 121 RCIYCSIQSVWSHKWRHHSADYVVRQIEHLVRDYGVGEIHFVDDNLTAN-------PKTA 173

Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306
                  +     +       +    + + L+            L   +++ S      +
Sbjct: 174 MEIFQTLIERKLDVKWTCPNGTAIWTLDEKLLDVMKTSG--CYRLTFGIEAASKETQAYI 231

Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
            +       R ++     +   I   S FI GFP +T +D + ++      G   A  + 
Sbjct: 232 RKNLNTERARAMLSYANKI--GIWTVSTFIFGFPHQTKEDMQDSIRYAISSGTDFATFYS 289

Query: 367 YSPRLGTPGSNMLEQ 381
             P   T    +L++
Sbjct: 290 LMPFPKTELWEILKK 304


>gi|322418133|ref|YP_004197356.1| Radical SAM domain-containing protein [Geobacter sp. M18]
 gi|320124520|gb|ADW12080.1| Radical SAM domain protein [Geobacter sp. M18]
          Length = 448

 Score = 75.4 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 50/282 (17%), Positives = 93/282 (32%), Gaps = 20/282 (7%)

Query: 101 LLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSV-EDK 159
             V++ G    A  +E  +     + +V  +       LLE A   KR +   Y     +
Sbjct: 87  KQVLLGGIHVTALPDEAAQ---HADAIVLGEAEEIWRGLLEDAE--KRALKPVYRGGFPE 141

Query: 160 FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP-YTRGIEISRSLSQVVDEARKLI 218
            + L            V  +     GC   CTFC V  +  G   +R + +VV E     
Sbjct: 142 LKGLPHPVTNLWNTNYVYGYFQTSRGCPHRCTFCSVHEFFGGKVRARPIDEVVAEI---A 198

Query: 219 DNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLI 278
            +       +  NV    G  ++     + ++  +L    G            D      
Sbjct: 199 ASKRRLFWGIDDNV---WGVDMNYTIELYREMGKNLR---GKSWFGSGDLVSVDHPRSAE 252

Query: 279 KAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR-PDIAISSDFIV 337
                    +  + +  +S +   L+      T  + RQ  D IR +R   I +    ++
Sbjct: 253 LLKNARSAGLTAVLVGWESNNIGSLEEYKA--TNKQGRQRRDAIRKIRDAGIEVMLFMMI 310

Query: 338 GFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
           G   +  +D+   + L D++  + A     +P  GT    + 
Sbjct: 311 GGRQDRVEDYEGILKLCDELKVS-AHPVMTTPFPGTQLYKIY 351


>gi|325110857|ref|YP_004271925.1| radical SAM protein [Planctomyces brasiliensis DSM 5305]
 gi|324971125|gb|ADY61903.1| Radical SAM domain protein [Planctomyces brasiliensis DSM 5305]
          Length = 514

 Score = 75.4 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 54/330 (16%), Positives = 110/330 (33%), Gaps = 22/330 (6%)

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           I  L +   +   + +VVV G     E EE+        VV G        EL      G
Sbjct: 72  ITKLVSDLKQVYPETIVVVGGPEVSYENEELQVVQQADYVVTGEGDV-AFRELCRELLAG 130

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTA---FLTIQEGCDKFCTFCVVPYTRGIEI 203
           +R +    +         ++      +  +     ++    GC   C FC+         
Sbjct: 131 RRPLTKQIAGGVPAMADVVMPYDLYNEEDIAHRVIYVEASRGCPFTCEFCL-SSLEIPVR 189

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
              +   +++ + L + G  +   + +  N          + + + L + L   +  + L
Sbjct: 190 QFDVEAFLEQMQSLFERGTRQFKFVDRTFNLNM-------RISKAILQFFLDRYEPGLFL 242

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
            +    P  +   L +             + VQ+ +D + + ++RR    +       +R
Sbjct: 243 HFEMI-PDRLPAALRELIAKFPAGALQFEIGVQTFNDDVGELISRRQDNEKLADNFRFLR 301

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV- 382
                + I +D IVG PGET + F A  D +  +   +          GTP +    +  
Sbjct: 302 EQT-GVHIHADLIVGLPGETLESFGAGFDRLVALDPQEIQVGILKRLRGTPITRHDAEWE 360

Query: 383 -------DENVKAERLLCLQKKLREQQVSF 405
                     + + RLL  +   R ++ + 
Sbjct: 361 MRYSQSPPYEILSNRLLDFETMQRMRRFAR 390


>gi|94263586|ref|ZP_01287396.1| Radical SAM [delta proteobacterium MLMS-1]
 gi|93456006|gb|EAT06157.1| Radical SAM [delta proteobacterium MLMS-1]
          Length = 589

 Score = 75.4 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 40/246 (16%), Positives = 81/246 (32%), Gaps = 25/246 (10%)

Query: 183 QEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG 242
             GC   C++C+    R        +QV  E  +L+ +G   +  + +  N+        
Sbjct: 180 SRGCPFACSYCL-SAARPGVKLLPPAQVKAELSQLLAHGPRLVRFVDRTFNSP------- 231

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
                 +L   L+   G  R  +  + P   +   +     +        + +QS +   
Sbjct: 232 -PDRALELWRWLAAQPGDTRFHFEIA-PELFTTEQLDFLATVPAGRFQFEIGLQSFNQEA 289

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           L ++NRR         I R+++   +I +  D I+G P +T   +  +++ +  +     
Sbjct: 290 LAAVNRRPDLGRAVANIQRLQAA-GNIHLHLDLILGLPFDTRASYHHSLNQILALRPHHL 348

Query: 363 FSFKYSPRLGTP-GSNMLE-------QVDENVKAER------LLCLQKKLREQQVSFNDA 408
                     TP  +   E       Q    V A R      L  L +     +  +N  
Sbjct: 349 QLGLLKVLPDTPLAARREEFGLRHCRQPPYQVLANRWLDQPELAALYRLGEVIEAFYNPR 408

Query: 409 CVGQII 414
                +
Sbjct: 409 FFRTTL 414


>gi|189499247|ref|YP_001958717.1| Radical SAM domain-containing protein [Chlorobium phaeobacteroides
           BS1]
 gi|189494688|gb|ACE03236.1| Radical SAM domain protein [Chlorobium phaeobacteroides BS1]
          Length = 469

 Score = 75.4 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 50/319 (15%), Positives = 99/319 (31%), Gaps = 43/319 (13%)

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             +   R  + +       + V++ G       EE  +     + +V  +       +L+
Sbjct: 75  RTIDATRAYEIADEFRKKGIPVILGGLHVSFNPEEAAQ---HADCIVCGEAENLWQTVLD 131

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNR----------KRGVTAFLTIQEGCDKFCT 191
               G   +   Y  +D      IV   Y R              +  + I  GC   C+
Sbjct: 132 DVVAGD--LKPSYDAKDFPPVKQIVPLDYKRIAEASKREKVDSTKSIPIYITRGCPYKCS 189

Query: 192 FCVVPYTRGIEISRSLSQ-----VVDEARKLIDNGVCE-----ITLLGQNVNAWRGKGLD 241
           FCV P   G    R         +V        +   +       L  +N+         
Sbjct: 190 FCVTPNFTGALYRRQADDDLKAQIVAAKEAFFKSTGKKNAKPWFMLCDENLGIS------ 243

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL-DVLMPYLHLPVQSGSD 300
             K    + L  L E   +  +  + +   D      +    L D       +  +S   
Sbjct: 244 --KSKLWNALDLLKECDIMFSVFLSMNFLEDD-----ETIKKLVDAGCNMALVGFESIKQ 296

Query: 301 RILKSMNRRH--TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
             L++ N+ H  +A +  ++I+R R     + I ++F+V    ++ +D    +  + K  
Sbjct: 297 STLEAYNKGHVNSADKIVEVIERCRRA--GLNIQANFLVNPDLDSFEDMDELVKFIGKNN 354

Query: 359 YAQAFSFKYSPRLGTPGSN 377
                    +P  GT   +
Sbjct: 355 VFMPIIQIITPYPGTKMYH 373


>gi|146295611|ref|YP_001179382.1| cobalamin B12-binding domain-containing protein
           [Caldicellulosiruptor saccharolyticus DSM 8903]
 gi|145409187|gb|ABP66191.1| cobalamin B12-binding domain protein [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 483

 Score = 75.4 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 53/320 (16%), Positives = 98/320 (30%), Gaps = 35/320 (10%)

Query: 79  KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVV----------- 127
                +     +  +  +   D+ +++ G       EE+++    V+             
Sbjct: 78  SYTDSILDAYKIAETAKEIYYDVPIIMGGPHVSFMFEEVMKDCYAVDFCCLGEGEPVLVE 137

Query: 128 ------VGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLT 181
                  G      +  L+ R   G+ + +      D  + +         +  +     
Sbjct: 138 LLEYLQYGVPNLKDIYGLVYRNSLGQCIANPKRGFIDSLDIMPFPWFSEKVQSIIREGEG 197

Query: 182 I----QEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG 237
                  GC   C FC      G    R        A  L         LL   +     
Sbjct: 198 FVFVSSRGCPGECIFCASRALSGP-KYR-----CHSAEWLASLIYYYYKLLSFKMFGPLD 251

Query: 238 KGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQS 297
                 +      L  L +I  +       S    +   L++       +   +H+ V+S
Sbjct: 252 DTFTANRIRLKKFLSYL-KILEINIPWSCKSRVDVIDGELVEILYKSKCI--SVHIGVES 308

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM---DLV 354
           G D +LKS+ +R T  +  + I  + S    I     FI+G P +T +    T+   D +
Sbjct: 309 GDDEVLKSIEKRITVEKVLKAITLLASK--GIRAECSFIIGHPSDTLESIERTLILADKL 366

Query: 355 DKIGYAQAFSFKYSPRLGTP 374
           DK G A +     +P  GT 
Sbjct: 367 DKCGVAISVMGICTPFPGTK 386


>gi|161870059|ref|YP_001599228.1| lipoyl synthase [Neisseria meningitidis 053442]
 gi|189046608|sp|A9LZ95|LIPA_NEIM0 RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|161595612|gb|ABX73272.1| lipoic acid synthetase [Neisseria meningitidis 053442]
          Length = 322

 Score = 75.0 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 42/250 (16%), Positives = 84/250 (33%), Gaps = 23/250 (9%)

Query: 127 VVGPQTYYRLPELLERARFGKRVVDT-----DYSVEDKFERLSIVDGGYNRKRGVTAFLT 181
           VV  Q   + PE +      ++  +      +  +    E  S  + G    +G   F+ 
Sbjct: 28  VVPLQEKLKKPEWIRAKLPSRKFFEIKDILREQKMHTVCEEASCPNIGECFSKGTATFMI 87

Query: 182 IQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD 241
           + + C + C FC V + R   +     +  + A  +    +  + +   +    R    D
Sbjct: 88  MGDICTRRCPFCDVGHGRPNML--DPDEPRNLAESVKAMNLRYVVITSVD----RDDLRD 141

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV-LMPY---LHLPVQS 297
           G    F+D + ++ E     ++       R   D  +K   +    +M +    H  +  
Sbjct: 142 GGAQHFADCIKAIRETSPNTKIEILVPDFRGRLDIALKILAETPPDVMNHNLETHPSLY- 200

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
                 +             ++ R + + P I   S  +VG  GETD+D R  M  +   
Sbjct: 201 ------RKARPGANYQHSLDLLKRYKEMMPHIPTKSGIMVGL-GETDEDVREIMRDMRAH 253

Query: 358 GYAQAFSFKY 367
                   +Y
Sbjct: 254 NIEMITIGQY 263


>gi|148270385|ref|YP_001244845.1| radical SAM domain-containing protein [Thermotoga petrophila RKU-1]
 gi|147735929|gb|ABQ47269.1| Radical SAM domain protein [Thermotoga petrophila RKU-1]
          Length = 441

 Score = 75.0 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 55/361 (15%), Positives = 115/361 (31%), Gaps = 50/361 (13%)

Query: 43  RMEDMFFSQGYERV---NSMDDADLIVLNTCHIRE------KAAEKVYSFLGRIRNLKNS 93
            +      +G+       +++  DL   N    R+       A    +  + RI     +
Sbjct: 28  YISSSLKRKGHSVALIDMNVEKFDLERFN---FRDYDVVGISADTVRFPVVERIAEKAKA 84

Query: 94  RIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR----- 148
           +     ++ VV+ G    A   EIL++     VV+G        +L+E     ++     
Sbjct: 85  Q-----NVTVVMGGPHTTACYHEILQKGLCDYVVLGEGER-AFSDLVESIASSEKYPLIP 138

Query: 149 ---------VVDTDYSVEDKFERLSIVDGGYNRKRGVT------AFLTIQEGCDKFCTFC 193
                    V+       +  + L   D                  L    GC   C FC
Sbjct: 139 GVAYMKDGEVIALPSRFLENLDDLPFPDREKVHLYRTKFAGERATSLITSRGCPFNCEFC 198

Query: 194 VVPYTRGIEIS-RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLY 252
                 G  I  RS+  V+DE + L   G   +     N            K   +    
Sbjct: 199 SASQFMGRRIRWRSIENVIDELKILKKLGYGSVIFFDDNFMIN-------PKRVVNLCEE 251

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
            + +        ++ +      + +++A          L +  +S +D +L+   +   +
Sbjct: 252 MMRKDLRFKWWAFSRADELLGREDMVEAM--SKAGCRMLFIGFESANDEVLEEYGKNLKS 309

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
                +++ ++  +  I + + F++G   +T      T+ L  K+  +       +P  G
Sbjct: 310 DIAFDVMNLLKKYK--IDVFASFVIGALKDTRKTIEKTVKLAKKLKASIVQFSILTPYPG 367

Query: 373 T 373
           T
Sbjct: 368 T 368


>gi|39998330|ref|NP_954281.1| radical SAM domain-containing protein [Geobacter sulfurreducens
           PCA]
 gi|39985276|gb|AAR36631.1| radical SAM domain protein [Geobacter sulfurreducens PCA]
          Length = 812

 Score = 75.0 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 47/241 (19%), Positives = 94/241 (39%), Gaps = 28/241 (11%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGK 238
           + I  GC + C FC   Y       RS  +++    + +   G  EI+LL  +       
Sbjct: 236 VEISRGCTRGCRFCQAGYLYRPVRERSPEKILALVEETLRATGYDEISLLSLST------ 289

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD--MSDCLIKAHGDLDVLMPYLHLPVQ 296
              G+    + LL  L       R+  +    R   ++D L++A   +        L  +
Sbjct: 290 ---GDYGCLTPLLTELMARYASERIAVSLPSMRVGSLNDELVEAIRTVRK--TGFTLAPE 344

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA-ISSDFIVGFPGETDDDFRATMDLVD 355
           +GS+R+ + +N+  +  +  +  +   +       I   F++G PGET++D    ++L  
Sbjct: 345 AGSERLRRVINKGISEEDLLR--NAFEAYSHGWRLIKLYFMIGLPGETEEDLHGIVELAR 402

Query: 356 KIGYA----------QAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSF 405
           K+                   + P+  TP      Q+      E+   L+++LR +++ F
Sbjct: 403 KVKMEGRRAGSGGEVNVSVSTFVPKAHTP-FQWEPQIPVGEILEKQGLLRRELRARKLVF 461

Query: 406 N 406
            
Sbjct: 462 K 462


>gi|297526614|ref|YP_003668638.1| Radical SAM domain protein [Staphylothermus hellenicus DSM 12710]
 gi|297255530|gb|ADI31739.1| Radical SAM domain protein [Staphylothermus hellenicus DSM 12710]
          Length = 516

 Score = 75.0 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 65/366 (17%), Positives = 130/366 (35%), Gaps = 41/366 (11%)

Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK----FCTFCVV 195
           +E+A   K   D + + +       I+    N    +   +    GC +     C+FC+ 
Sbjct: 153 VEKAEPWKLREDYELANKALIHGAKIIKQHPNHGWNLIVEIETFRGCPRWIVGGCSFCIE 212

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQ-NVNAWRGKGLDGEKCTFSDLLYSL 254
           P      + R    +V E  +L   G     +  Q ++ A+ GKG+ GE+      + +L
Sbjct: 213 PRYGRPLM-RKPEDIVKEVEQLYRFGARHFRIGRQPDILAYMGKGV-GEREYPEPNVEAL 270

Query: 255 SEI--------KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY------LHLPVQSGSD 300
            ++         GL  L     +P  +     K+   L  ++ Y        L ++S  +
Sbjct: 271 KKLFHGIRNVASGLRVLHIDNVNPGTIIHNPEKSIKALKTIVKYHTPGDVAALGIESFDE 330

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSV--------RPDIAISSDFIVGFPGETDDDFRATMD 352
           ++++  N +    E   +I  I  +         P +    + + G PGET + FR   +
Sbjct: 331 KVVRMNNLKVYPDEALVVIRIINEIGKHRGWNGLPHLLPGINLLYGLPGETKNTFRTNYE 390

Query: 353 LVDKIG-----YAQAFSFKYSPRLGTPGSNMLEQVDENVKA-ERLLCL--QKKLREQQVS 404
            + KI        +    K S    TP     + V++ ++   RL  +   K + E    
Sbjct: 391 YLKKIYREGLLIRRINIRKVSVLENTPLWMHRKTVEQLLRKHRRLYNIYRVKIMNEIDRG 450

Query: 405 FNDAC--VGQIIEVLIEKHGKEKGKLVGRSP-WLQSVVLNSKNHNIGDIIKVRITDVKIS 461
                  +  II  L  +        + R P     +V       +  I+ +R+  +   
Sbjct: 451 MLQRIAPINSIIRYLYTEK-HMGEYTIARQPASYPIIVKIPGKLPLKKIVDIRVRKIAAK 509

Query: 462 TLYGEL 467
           ++   +
Sbjct: 510 SIIATI 515


>gi|94268697|ref|ZP_01291260.1| Radical SAM [delta proteobacterium MLMS-1]
 gi|93451502|gb|EAT02329.1| Radical SAM [delta proteobacterium MLMS-1]
          Length = 589

 Score = 75.0 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 40/241 (16%), Positives = 80/241 (33%), Gaps = 25/241 (10%)

Query: 183 QEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG 242
             GC   C++C+    R        +QV  E  +L+ +G   +  + +  N+        
Sbjct: 180 SRGCPFACSYCL-SAARPGVKLLPPAQVKAELSQLLAHGPRLVRFVDRTFNSP------- 231

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
                 +L   L+   G  R  +  + P   +   +     +        + +QS +   
Sbjct: 232 -PDRALELWRWLAAQPGDTRFHFEIA-PELFTTEQLDFLATVPAGRFQFEIGLQSFNQEA 289

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           L ++NRR         I R+++   +I +  D I+G P +T   +  +++ +  +     
Sbjct: 290 LAAVNRRPDLGRAVANIQRLQAA-GNIHLHLDLILGLPFDTRASYHHSLNQILALRPHHL 348

Query: 363 FSFKYSPRLGTP-GSNMLE-------QVDENVKAER------LLCLQKKLREQQVSFNDA 408
                     TP  +   E       Q    V A R      L  L +     +  +N  
Sbjct: 349 QLGLLKVLPDTPLAARREEFGLCHCRQPPYQVLANRWLDQPALAALYRLGEVIEAFYNPR 408

Query: 409 C 409
            
Sbjct: 409 F 409


>gi|196232149|ref|ZP_03131004.1| Radical SAM domain protein [Chthoniobacter flavus Ellin428]
 gi|196223871|gb|EDY18386.1| Radical SAM domain protein [Chthoniobacter flavus Ellin428]
          Length = 443

 Score = 75.0 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 51/327 (15%), Positives = 94/327 (28%), Gaps = 53/327 (16%)

Query: 99  GDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-------ERARFGKRVVD 151
             + + V G +     +EI+    +V  + G         +                +  
Sbjct: 122 PHVKIAVCGPITTIRADEIMALPNVVAAIKGEYEKAAAKVVQGATGVFEHDLLTATEMNA 181

Query: 152 TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT----------RGI 201
             +   D        D      R   A +    GC   C FCV P T          R  
Sbjct: 182 APFPYYDAVTAWRYYDPNPQSPRLPQAHVWSSRGCPFKCLFCVWPATMTGNDPDGEHRRT 241

Query: 202 EISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
               +   +    R ++   G   I       N              +  +  + E+   
Sbjct: 242 VRHYTAEYMEGFLRDIVGRYGFRSIYFDDDTFN------------LGNRHVERMCEVMRK 289

Query: 261 VRLRYTTSHPRD-MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK-SMNRRHTAYEYRQI 318
           + L +      D ++    K   +       + L  +SG+  ++   +N+     E R+ 
Sbjct: 290 IALPWGAMCRADTINRETWKLMRESG--CYGVKLGFESGNQHVVDNIVNKGLDLQEARET 347

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP---- 374
              +R++   + +   F  G PGET +    T   +  +          +   GTP    
Sbjct: 348 TIYLRNL--GMTVHGTFTYGLPGETKEQMAETKAYIRSLPLTSYQESGTAEIEGTPLHTL 405

Query: 375 ----------GSNMLE---QVDENVKA 388
                     G+ M E   QV + VK 
Sbjct: 406 RSAGHLEKYSGATMDENYRQVSDGVKK 432


>gi|298507261|gb|ADI85984.1| radical SAM domain iron-sulfur cluster-binding oxidoreductase
           [Geobacter sulfurreducens KN400]
          Length = 831

 Score = 75.0 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 47/241 (19%), Positives = 94/241 (39%), Gaps = 28/241 (11%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGK 238
           + I  GC + C FC   Y       RS  +++    + +   G  EI+LL  +       
Sbjct: 255 VEISRGCTRGCRFCQAGYLYRPVRERSPEKILALVEETLRATGYDEISLLSLST------ 308

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD--MSDCLIKAHGDLDVLMPYLHLPVQ 296
              G+    + LL  L       R+  +    R   ++D L++A   +        L  +
Sbjct: 309 ---GDYGCLTPLLTELMARYASERIAVSLPSMRVGSLNDELVEAIRTVRK--TGFTLAPE 363

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA-ISSDFIVGFPGETDDDFRATMDLVD 355
           +GS+R+ + +N+  +  +  +  +   +       I   F++G PGET++D    ++L  
Sbjct: 364 AGSERLRRVINKGISEEDLLR--NAFEAYSHGWRLIKLYFMIGLPGETEEDLHGIVELAR 421

Query: 356 KIGYA----------QAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSF 405
           K+                   + P+  TP      Q+      E+   L+++LR +++ F
Sbjct: 422 KVKMEGRRAGSGGEVNVSVSTFVPKAHTP-FQWEPQIPVGEILEKQGLLRRELRARKLVF 480

Query: 406 N 406
            
Sbjct: 481 K 481


>gi|18312077|ref|NP_558744.1| hypothetical protein PAE0656 [Pyrobaculum aerophilum str. IM2]
 gi|18159505|gb|AAL62926.1| conserved hypothetical protein [Pyrobaculum aerophilum str. IM2]
          Length = 532

 Score = 75.0 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 49/292 (16%), Positives = 104/292 (35%), Gaps = 29/292 (9%)

Query: 95  IKEGGDLLVVVAGCVAQAE--GEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDT 152
            K    L V+V G  A       E++ R  I  +  G      + ++++ A  GK +   
Sbjct: 147 AKSANGLRVIVGGPAAWQWLYFPELVERWGIDTIFDGEGEKLIV-DIVKNALEGKPL--P 203

Query: 153 DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVD 212
            Y      E  S+ +    +   +   + I  GC + C FC V           L ++  
Sbjct: 204 KYVYVGVSEAPSVDEISTIKYPSINGLVEIGRGCPRGCAFCSVTL--RAMRWYPLEKIEQ 261

Query: 213 EARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPR- 271
           E +   + GV +  L    V  +   G++ +         +L ++      +   SH   
Sbjct: 262 ELKVNAEAGVVDGILHSDEVPLYGSTGVEPDPEKLI----ALHKLAKRYYRKVGWSHTTL 317

Query: 272 -----------DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN----RRHTAYEYR 316
                       +   L +   D         + +++GS R+ + +       +   ++ 
Sbjct: 318 VAIYHGEKKMGKLFTKLSEIIIDEHQDWWGAQIGLETGSVRLARKIMPGKAAPYKIDQWH 377

Query: 317 QIIDRIRSVRPDIA--ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
           +I+    S+  +I    +   IVG P E  +D   T++L++++   ++    
Sbjct: 378 EIVVEAASIMHEIRLIPAITIIVGLPEEQPEDVIETIELIERLRPYRSLIVP 429


>gi|253681895|ref|ZP_04862692.1| magnesium-protoporphyrin IX monomethyl ester oxidative cyclase
           [Clostridium botulinum D str. 1873]
 gi|253561607|gb|EES91059.1| magnesium-protoporphyrin IX monomethyl ester oxidative cyclase
           [Clostridium botulinum D str. 1873]
          Length = 576

 Score = 75.0 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 39/218 (17%), Positives = 82/218 (37%), Gaps = 17/218 (7%)

Query: 157 EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARK 216
            D  E +   +   N +  +  +     GC   C +C+          R++ +V  E + 
Sbjct: 171 MDINEVIFPYEEDDNLENKIVYYEA-SRGCPYGCKYCL-SSVDKNLRFRNIDKVKQELKY 228

Query: 217 LIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDC 276
            ID  V  +  + +  NA     +D        +   L+E     +  +  S    ++  
Sbjct: 229 FIDKKVRLVKFVDRTFNANEKFAID--------IWRFLAEQDTDTKFHFEIS-ANILTKG 279

Query: 277 LIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFI 336
            ++             + VQ+ ++ ILK++NR       ++ ++ ++ +  +I+   D I
Sbjct: 280 QMEILSKSPKGRLQFEVGVQTTNNNILKNINRHVNFENIQEKVEEVQKL-HNISQHLDLI 338

Query: 337 VGFPGETDDDFRATMDLV-----DKIGYAQAFSFKYSP 369
            G PGE  + F  + + V     ++I        K SP
Sbjct: 339 AGLPGENMESFIHSFNDVYAIRPEEIQLGFLKLLKGSP 376


>gi|86357471|ref|YP_469363.1| hypothetical protein RHE_CH01844 [Rhizobium etli CFN 42]
 gi|86281573|gb|ABC90636.1| hypothetical conserved protein [Rhizobium etli CFN 42]
          Length = 589

 Score = 75.0 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 45/278 (16%), Positives = 96/278 (34%), Gaps = 20/278 (7%)

Query: 105 VAGCVAQAEGEEI---LRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFE 161
           V+GC++  +G  +     R   +++  G +   RL  +L  A  G+     ++  +    
Sbjct: 127 VSGCLSMLDGTAVGLDACREMGISMFAG-EAEGRLDMVLRDAAAGELKPLYNFMNDLPGI 185

Query: 162 RLSIVDG----GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI-EISRSLSQVVDEARK 216
             + V         R  G++       GC   C+FC +   +G     RS   V    R 
Sbjct: 186 GGTPVPFLPKDNIQRTLGLSTSFDAGRGCPYQCSFCTIINVQGRKSRFRSADDVEKLVRM 245

Query: 217 LIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDC 276
               G+ +  +   N    +            D L  L E  G+                
Sbjct: 246 NWAQGIHKFFITDDNFARNKDWEA------IFDRLIELKERDGIPLGLMIQVDTL-CHKI 298

Query: 277 LIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA-YEYRQIIDRIRSVRPDIAISSDF 335
                      +  + + +++ +   L +  +      EYR+++   ++    I   + +
Sbjct: 299 PNFIEKSRRAGVTRVFIGLENVNPDNLTAAKKNQNKITEYRKMLLAWKAQ--GIMTLAGY 356

Query: 336 IVGFPGETDDDFRATMDLV-DKIGYAQAFSFKYSPRLG 372
           I+GFP +T +  R  + ++ +++       F  +P  G
Sbjct: 357 ILGFPADTPESIRRDIAIIQEELPLDVIEFFILTPLPG 394


>gi|16081609|ref|NP_393969.1| P-methyltransferase related protein [Thermoplasma acidophilum DSM
           1728]
 gi|10639661|emb|CAC11633.1| P-methyltransferase related protein [Thermoplasma acidophilum]
          Length = 529

 Score = 75.0 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 45/276 (16%), Positives = 94/276 (34%), Gaps = 14/276 (5%)

Query: 103 VVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFER 162
           ++V G   +A  + +       +    P   ++   +  R    + + D D      F+ 
Sbjct: 120 IIVLGEGDEAFRDVLEHYRDNADFSDIPGIIFKSGNMKIRTEKRELIDDLDRLPIPAFDL 179

Query: 163 LSIVDGGYN-RKRGVTAFLTIQEGCDKFCTFC-VVPYTRGIEISRSLSQVVDEARKLIDN 220
           +      +     G  A +    GC   C FC V P       ++S  ++++E R +   
Sbjct: 180 VDKERYTFKVFGEGSVATVETARGCPYACDFCSVTPTWGNKWRNKSNDRIMEELRIVKSL 239

Query: 221 GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKA 280
           G   +     ++           K         + E  GL  +    +     +  LI+ 
Sbjct: 240 GYRWVFFT-DDIFVVY----PNVKQRSDLFDRIIEEDLGLKFIVQMRADVTSKNPDLIR- 293

Query: 281 HGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFP 340
                  +    L ++SGS+ +LK+M++          +  +     +I +    ++G P
Sbjct: 294 -KASQAGLTIAFLGIESGSEEVLKAMHKGIMTSASVNAVKILTQN--NIVVLGGMMLGAP 350

Query: 341 GETDDDFRATMDL---VDKIGYAQAFSFKYSPRLGT 373
            E+  D   T+     + + G        Y+P  GT
Sbjct: 351 YESFRDMMKTIKFSRVLARAGIDAIQISTYTPLPGT 386


>gi|253702142|ref|YP_003023331.1| radical SAM protein [Geobacter sp. M21]
 gi|251776992|gb|ACT19573.1| Radical SAM domain protein [Geobacter sp. M21]
          Length = 488

 Score = 75.0 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 49/211 (23%), Positives = 86/211 (40%), Gaps = 14/211 (6%)

Query: 175 GVTAFLTIQEGCDKFCTFCVVP-YTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNV 232
           G  A +    GCD  C FC    + R     R   +V++E   LID  GV   TL+    
Sbjct: 200 GTMASILTSRGCDMECAFCSQRMFWREDWRCRKPEKVIEEMVHLIDEYGVSFFTLID--- 256

Query: 233 NAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLH 292
                         F DL+  +    G+  L  T          ++  + D  ++  +++
Sbjct: 257 --AYPTKHRERWELFLDLV--IERKLGVHLLIETRVEDIIRDRDILHKYRDAGII--HVY 310

Query: 293 LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352
           L  +S    +L S+N+  +  + ++ +D +R     I   + F++GFP ET D  + T+D
Sbjct: 311 LGAESADKDVLGSLNKGTSFEQNKEALDLLREA--QIITEASFMIGFPTETWDSIQNTID 368

Query: 353 LVDKIGYAQAFSFKYSPRLGTP-GSNMLEQV 382
               +    A     +P   TP  + M E++
Sbjct: 369 SAIYLNPDIAVFPVVTPMPFTPIHAQMKERI 399


>gi|167629376|ref|YP_001679875.1| magnesium-protoporphyrin ix monomethyl ester anaerobic oxidative
           cyclase [Heliobacterium modesticaldum Ice1]
 gi|167592116|gb|ABZ83864.1| magnesium-protoporphyrin ix monomethyl ester anaerobic oxidative
           cyclase [Heliobacterium modesticaldum Ice1]
          Length = 547

 Score = 75.0 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 58/383 (15%), Positives = 119/383 (31%), Gaps = 52/383 (13%)

Query: 43  RMEDMFFSQGYE-------RVNSMDD---ADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92
            +     + GY            + D   A++I  N   +   +A  +   + + ++   
Sbjct: 28  YIGGSLKAAGYTNMKFIDAMTEDLPDDVLAEIIRKNQPDVVMASA--ITPMIYKAQDTLR 85

Query: 93  SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVV-----------------GPQTYYR 135
              +       ++ G        +IL  +P ++ +V                 G     R
Sbjct: 86  IAKQSNPACKTILGGIHPTFMYSQILTETPEIDYIVRGEGEEIIVNLMNAIAAGTDLKDR 145

Query: 136 LPEL-LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGV-------TAFLTIQEGCD 187
              L +     GK V    +      + L+      +  + +        A      GC 
Sbjct: 146 KDILGIAYMEDGKVVATPAHPPIKNLDGLTPDWSILDWDKYIYIPLNCRVAVPNFARGCP 205

Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDEARKLI-DNGVCEITLLGQNVNAWRGKGLDGEKCT 246
             C FC           R   + VDE   L+ D+ V    L  +     R K +      
Sbjct: 206 FTCRFCSQWKFWRTYRVRHPKKFVDEIETLVKDHKVGFFILADEEPTINRDKFV----AM 261

Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306
             +L+    ++   +  R T          L+  +    ++  ++ L  ++ +   L   
Sbjct: 262 CQELIDRKLDVHWGINTRVTDILR---DAHLLPFYRKAGLV--HISLGTEAATQMNLDRF 316

Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
            +  T  E ++ ID I++    +   + FI+G   E+      T  L             
Sbjct: 317 RKETTMEENKRAIDMIKAN--GMVAEAQFIMGLENESPKTIEETFQLARYWDADMVNWNM 374

Query: 367 YSPRLGTPGSNMLEQVDENVKAE 389
           Y+P    P S + E++ + V+  
Sbjct: 375 YTPW---PFSELFEELGDKVEVR 394


>gi|237739277|ref|ZP_04569758.1| radical SAM domain-containing protein [Fusobacterium sp. 2_1_31]
 gi|229422885|gb|EEO37932.1| radical SAM domain-containing protein [Fusobacterium sp. 2_1_31]
          Length = 446

 Score = 75.0 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 57/317 (17%), Positives = 107/317 (33%), Gaps = 36/317 (11%)

Query: 61  DADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRR 120
           +AD+IV+ +       +++ Y++    R            + VV+ G       EE  + 
Sbjct: 60  EADIIVMTS---ITGTSQRCYAYADYFRQ---------RGITVVLGGVHPSLMPEEASQ- 106

Query: 121 SPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGV--TA 178
               +VV+        P++L   + G+         E   +   I      +K     TA
Sbjct: 107 --HADVVMVGFAEQTFPQMLLDFKNGRLKRMYIQDKEFNLDNKVIPRRELLQKDKYITTA 164

Query: 179 FLTIQEGCDKFCTFCVVPYTRGIEIS-RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG 237
            + +  GC   CTFC  P   G +I  R + +V+ E     +     I     N+ A   
Sbjct: 165 TVEVVRGCSLPCTFCAYPTAFGRKIYKRPIKEVLSEIEMFSE---KIILFPDVNLIA--- 218

Query: 238 KGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQS 297
                ++     L   +  +        T+S   D +  +IK   D       L +  +S
Sbjct: 219 -----DREYAMRLFKEMKSLNKYWMGLVTSSVGIDEN--MIKTFADSG--CKGLLIGFES 269

Query: 298 GSDRILKSMNRRHT-AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
            +      +N+      +Y +++ ++      I +   F  G   E    F  T++ V K
Sbjct: 270 ITQESQSYINKGINKVADYAELMKKLHDY--GILVQGCFAFGSDEEDTSVFERTVEAVVK 327

Query: 357 IGYAQAFSFKYSPRLGT 373
                      +P   T
Sbjct: 328 AKIDLPRYSILTPFPKT 344


>gi|310822110|ref|YP_003954468.1| radical sam domain-containing protein [Stigmatella aurantiaca
           DW4/3-1]
 gi|309395182|gb|ADO72641.1| Radical SAM domain protein [Stigmatella aurantiaca DW4/3-1]
          Length = 471

 Score = 75.0 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 53/255 (20%), Positives = 96/255 (37%), Gaps = 14/255 (5%)

Query: 125 NVVVGPQTYYRLPELLERARFG---KRVVDTDYSVEDK-FERLSIVDGGYNRKRGVTAFL 180
           + V+  +    +P L++    G   KR     +  +     R  ++D   NR R   A +
Sbjct: 105 DAVITGEPEPNVPALIQDFEKGQIQKRYSLASWGPDAIQPYRYDLIDFKNNRVR--LAGI 162

Query: 181 TIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL 240
               GC   C FCV+         RS+  V++E R  +         +  NV  +    L
Sbjct: 163 EASRGCPFRCNFCVLT-GHERYRYRSIPTVIEEIRTKMTWNKNFFGAM-DNVFVFLDNNL 220

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300
            G      +L  +L  +K +     T +  +D S   + A         Y++  ++S + 
Sbjct: 221 GGSPKYLRELCEALIPLKKIWGCALTFNILKDESLVRLMAQAG----CRYIYTGMESLNP 276

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG-Y 359
             +K+MN+          + R R+    I +S   IVG  G+T++      + +  +  +
Sbjct: 277 ESIKAMNKGQNKLSEVDEVIR-RTFSHGIVLSFGLIVGSDGDTNEYLEKLPEYLSDLKYF 335

Query: 360 AQAFSFKYSPRLGTP 374
           A  F     P   TP
Sbjct: 336 AVTFLGIVCPYPETP 350


>gi|118580892|ref|YP_902142.1| magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase
           [Pelobacter propionicus DSM 2379]
 gi|118503602|gb|ABL00085.1| Magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase
           [Pelobacter propionicus DSM 2379]
          Length = 484

 Score = 75.0 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 51/321 (15%), Positives = 96/321 (29%), Gaps = 43/321 (13%)

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG-- 146
            L +   +       V  G    A GE +L   P+++  V  +    L EL+E       
Sbjct: 91  RLAHRVREARPSARCVFGGVHLSALGERLLAEYPVIDFGVMGEGEETLRELVESEGKQLA 150

Query: 147 -------------------KRVVDTDYSVEDKFERLSIVDGGYNRK-----RGVTAFLTI 182
                              +++VD D      +E+L      Y        +     +  
Sbjct: 151 DIRGLIHRQKDRVVFNGYREQLVDMDSLPFPLYEKLHGFPDSYRLPIFSYPKAPNTTIIT 210

Query: 183 QEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLD 241
             GC   C++C     R      S   +++    L     +  + +        R + LD
Sbjct: 211 SRGCPYTCSYCDRSVFRRSYRYNSPQYMLNYLLHLRQRFNIRHVNIYDDTFTLKRQRVLD 270

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
                       L    GL       +    +   ++            + L +++G  +
Sbjct: 271 ---------FCQLKISSGLKMTFNCAARTEQLDREMLVQLKRAG--CWMISLGIETGDPQ 319

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVR-----PDIAISSDFIVGFPGETDDDFRATMDLVDK 356
           +L+       +      +  IR          I +   F++G PGET +  R +M+ V  
Sbjct: 320 LLQRHRSYLPSQVVENPLQNIRETVLLIKECGIRVKGLFMMGLPGETGESIRQSMEYVFS 379

Query: 357 IGYAQAFSFKYSPRLGTPGSN 377
           +        K +P  G P   
Sbjct: 380 LPLDDFNLSKLTPFPGAPMYR 400


>gi|34499336|ref|NP_903551.1| hypothetical protein CV_3881 [Chromobacterium violaceum ATCC 12472]
 gi|34332892|gb|AAQ61543.2| conserved hypothetical protein [Chromobacterium violaceum ATCC
           12472]
          Length = 558

 Score = 75.0 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 50/248 (20%), Positives = 93/248 (37%), Gaps = 15/248 (6%)

Query: 127 VVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGC 186
           V+G + +    + ++         D D    DK E   +V   +N  +     +    GC
Sbjct: 163 VMGEELFAPKHDFIDDLDE-IPFFDYDLCDIDKHEINQVVASYHNLDKTRGFHVMTSRGC 221

Query: 187 DKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
              CTFC    T G      SL +V ++  +L++      T++ Q+         D    
Sbjct: 222 PFLCTFCASHRTHGRSMRYHSLERVREDFTRLVEK-YNAATVIFQD---------DHLMA 271

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
               +   L  +K L       +     +          D  + +L LPV+SGS+++LK 
Sbjct: 272 DSDRVYKILDIVKSLKLHSVYQNGLTLYALDRPMLEAFWDAGVRHLVLPVESGSEKVLKK 331

Query: 306 MNRRHTAYEYRQIIDR-IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
             R+    +  + + +  R +   I  +++ ++G PGET  D       + +I       
Sbjct: 332 QMRKPLKMKISERVAKDCREL--GIYTNTNILIGMPGETKADLEDARRNLREIASNWFNI 389

Query: 365 FKYSPRLG 372
              SP +G
Sbjct: 390 ACASPIVG 397


>gi|227830617|ref|YP_002832397.1| radical SAM protein [Sulfolobus islandicus L.S.2.15]
 gi|227457065|gb|ACP35752.1| Radical SAM domain protein [Sulfolobus islandicus L.S.2.15]
          Length = 528

 Score = 75.0 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 57/294 (19%), Positives = 105/294 (35%), Gaps = 26/294 (8%)

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
           K S++K   +  V+V G  +    +E       V+V+   +    LP +++    G+ V 
Sbjct: 134 KISKLKSKYNFKVIVGGPGSWELTKE---NKDWVDVIFIGEAEADLPRVVKSIIDGQEVP 190

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC-VVPYTRGIEISRSLSQ 209
              Y    K   +  +             + I  GC + C FC + P T     +  L  
Sbjct: 191 KVFYGKNPKVNEIPPIINPARLGE-----VQITRGCPRGCQFCPITPET---FRTIPLDV 242

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE--IKGLVRLRYTT 267
           V  E    +  GV  +  +  +V  +  + L       + L        + G+     + 
Sbjct: 243 VKKEVEVNMRAGVKRVEFITDDVLLYGSQKLRVNHEAITKLFTETMNMGVDGIWFPHISA 302

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLH----LPVQSGSDRILKSMNR----RHTAYEYRQII 319
              R  S   +KA  ++            + ++SGS++IL    R      T  E++ +I
Sbjct: 303 PAVRS-SPQTVKAMSEIARYDEDRAAAPVVGLESGSEKILSKYMRAKPFPWTPREWKDVI 361

Query: 320 DRIRSVRPD--IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
               ++  D  I       +G+P ET++D   ++DLV  I           P  
Sbjct: 362 LDATAIMNDNYIYPCYTMTIGYPEETNEDVDQSIDLVQSI-IDHKLKAWIFPLP 414


>gi|257091982|ref|YP_003165623.1| Radical SAM domain-containing protein [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257044506|gb|ACV33694.1| Radical SAM domain protein [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
          Length = 547

 Score = 75.0 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 46/235 (19%), Positives = 85/235 (36%), Gaps = 21/235 (8%)

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRK-----RGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
            R++D D      +E+L+     Y+       +   A +    GC   C+FC       +
Sbjct: 167 HRILDLDELPFPAYEKLAGFPHAYHLPLFAYDKRYGATMITSRGCPYTCSFCDRTVFERL 226

Query: 202 EISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
             + S     +  R L D  GV  I        A         +   ++L   L  I   
Sbjct: 227 YKTNSAQYTYEHMRHLRDRFGVYHINFYDDLFTAH--------RKRVTELCQLL--IDKP 276

Query: 261 VRLRYTT-SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           + + +         SD ++        LM  + + ++S    +++      T  E ++ +
Sbjct: 277 LGMNFNCAIRTGHTSDEMLGMLKKAGALM--VSMGIESADPGMMERHKAGVTLPEVKKTV 334

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
           ++I +    +     FI G PGET +  R T D +  +   +    K+SP  G P
Sbjct: 335 EQIHAA--GLRAKGLFIFGLPGETPETLRHTSDFILSLDLDEMNMTKFSPMYGAP 387


>gi|254168782|ref|ZP_04875623.1| radical SAM domain protein [Aciduliprofundum boonei T469]
 gi|197622219|gb|EDY34793.1| radical SAM domain protein [Aciduliprofundum boonei T469]
          Length = 531

 Score = 75.0 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 55/304 (18%), Positives = 107/304 (35%), Gaps = 29/304 (9%)

Query: 75  KAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG-EEILRRSPIVNVVVGPQTY 133
           K          R+ N +  R  +   + ++  G  A      E   +   V+ VV  +  
Sbjct: 116 KTETVNARSFARLMNSEPVRKMKKNGVKIIAGGPAAWHWKYREDKMKEWGVDTVVDGEGE 175

Query: 134 YRLPELLERARFGK---RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190
             + EL+ RA  G+   + +D   S   K E +S +         V   + +  GC + C
Sbjct: 176 LAIGELVRRALKGEELPKFIDLKPSQSPKIEEISEIKLP-----SVNGLVEVMRGCPRGC 230

Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDL 250
            FC V             ++  E    + NGV    +  ++V    G           + 
Sbjct: 231 KFCSVTL--RPLRYMPFEKIEKEILVNVRNGVENGIIHSEDV-LLYGAKPPSYIIPNEEK 287

Query: 251 LYSLSEIKGLVRLRYTTSHPR-------DMSDCLIKAHGDLDVLMPY----LHLPVQSGS 299
           L  L ++      +   +H              L+    ++ +          + V++GS
Sbjct: 288 LIKLHKLFKKHYKKVVWAHASLAAIVKGQQDSKLMDKLAEIIIDEHQSWWGAEIGVETGS 347

Query: 300 DRILKSMN----RRHTAYEYRQIIDRIRSVRPDIA--ISSDFIVGFPGETDDDFRATMDL 353
            R+ K +     +  +  ++ +I+     +  D+    +   I G P ET+DD   T++L
Sbjct: 348 PRLAKIIMPQKAKPFSTEKWPEIVLEGAGIMQDVGMQPAMTLIAGLPEETEDDIIKTLEL 407

Query: 354 VDKI 357
           VD +
Sbjct: 408 VDDL 411


>gi|148655096|ref|YP_001275301.1| magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative
           cyclase [Roseiflexus sp. RS-1]
 gi|148567206|gb|ABQ89351.1| magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative
           cyclase [Roseiflexus sp. RS-1]
          Length = 528

 Score = 75.0 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 53/382 (13%), Positives = 106/382 (27%), Gaps = 50/382 (13%)

Query: 43  RMEDMFFSQGYE-------RVNSMDD---ADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92
            +       GY          N++ D   A +I  N   +    A  +   + + +    
Sbjct: 28  YIGGALRKAGYSNLRFVDAMTNNLPDSTVAQIIRANRPDVVMATA--ITPMIYKAQETLR 85

Query: 93  SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG------ 146
              +       ++ G        ++L  +P ++ +V  +    +  L+     G      
Sbjct: 86  LAREANPGCKTILGGVHPTFMYAQVLTEAPWIDYIVRGEGEEIIVNLMRAIENGSDERDR 145

Query: 147 KRVVDTDYSVED----KFERLSIVDGGYNRKRGV---------------TAFLTIQEGCD 187
            ++    +  ED          I D                         A      GC 
Sbjct: 146 HQIQGIAFLDEDRVVATPAHPPIADLSTLTPDWSLLEWEKYIYIPLNVRVAVPNFARGCP 205

Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTF 247
             C FC           R     VDE   L+        +L         K         
Sbjct: 206 FTCRFCSQWKFWRKYRVRDPIAFVDEIELLVREYKIGFFILADEEPTIYRKKF---IAMC 262

Query: 248 SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307
            +L      +   +  R T     +    L +  G     + ++ L  ++ +   L    
Sbjct: 263 EELERRKLGVHWGINTRVTDILRDEKYLPLYRRAG-----LVHVSLGTEAAAQMNLDRFR 317

Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           +  T  + ++ I  ++     I   + FI+G   ET +    T           A    Y
Sbjct: 318 KETTIEQNKRAIRLLQDQ--GIVAEAQFIMGLENETPETIEETYRFALDWNADMANWNMY 375

Query: 368 SPRLGTPGSNMLEQVDENVKAE 389
           +P    P + + E++ + V+  
Sbjct: 376 TPW---PFAELFEELGDRVEVR 394


>gi|254169076|ref|ZP_04875913.1| radical SAM domain protein [Aciduliprofundum boonei T469]
 gi|197621915|gb|EDY34493.1| radical SAM domain protein [Aciduliprofundum boonei T469]
          Length = 524

 Score = 74.6 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 47/315 (14%), Positives = 113/315 (35%), Gaps = 27/315 (8%)

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVA-QAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           +R +++ R K+G    + V G  + Q + +E L     V+ ++  +T + + ++      
Sbjct: 130 MRRIRDYREKKGYKFKIEVGGPGSWQLQVKEKLTEELRVDHIMIGETEHVIGDVFRDIES 189

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G            K E +  +             + +  GC + CTFC  P  R      
Sbjct: 190 GNAEKIIHIKSWPKLEEIPNIVAPT-----FKGMIEVMRGCGRGCTFCS-PNLRTA-RFY 242

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG---LDGEKCTFSDLLYSLSEIKGLVR 262
            + +++ E +  I  G     L  +++  +  +        +     L   + +      
Sbjct: 243 PIEKILAELKVNIRAGQKTAWLHSEDIFNYMVEDRRNFYPNEDAVIGLFEEVLKHVEFAN 302

Query: 263 LRYTTSHPRDMSDCLIKAHGDLD--VLMPY--LHLPVQSGSDRILKSM----NRRHTAYE 314
             + T+     +  ++K   +L+   +  +  + +  ++ S  ++K +     +  +  E
Sbjct: 303 PTHGTAAGGLAAPRILKRVAELNHANINRWVGIQVGFETASPELIKRIANNKMKPFSPEE 362

Query: 315 YRQIIDRIRSVRPDI--AISSDFIVGFPGETDDDFRATMDLVDKI------GYAQAFSFK 366
           +  ++              +   IVG PGETD+D   T  L+  +         +   F 
Sbjct: 363 WPWVLLNGTYAFNKFFWFPAYTSIVGLPGETDEDGYDTARLIITMEKKLREKLGEKAHFT 422

Query: 367 YSPRLGTPGSNMLEQ 381
            +P    P + + ++
Sbjct: 423 VTPLAFVPMAALKDE 437


>gi|254168676|ref|ZP_04875518.1| radical SAM domain protein [Aciduliprofundum boonei T469]
 gi|289596808|ref|YP_003483504.1| Radical SAM domain protein [Aciduliprofundum boonei T469]
 gi|197622302|gb|EDY34875.1| radical SAM domain protein [Aciduliprofundum boonei T469]
 gi|289534595|gb|ADD08942.1| Radical SAM domain protein [Aciduliprofundum boonei T469]
          Length = 531

 Score = 74.6 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 55/304 (18%), Positives = 107/304 (35%), Gaps = 29/304 (9%)

Query: 75  KAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG-EEILRRSPIVNVVVGPQTY 133
           K          R+ N +  R  +   + ++  G  A      E   +   V+ VV  +  
Sbjct: 116 KTETVNARSFARLMNSEPVRKMKKNGVKIIAGGPAAWHWKYREDKMKEWGVDTVVDGEGE 175

Query: 134 YRLPELLERARFGK---RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190
             + EL+ RA  G+   + +D   S   K E +S +         V   + +  GC + C
Sbjct: 176 LAIGELVRRALKGEELPKFIDLKPSQSPKIEEISEIKLP-----SVNGLVEVMRGCPRGC 230

Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDL 250
            FC V             ++  E    + NGV    +  ++V    G           + 
Sbjct: 231 KFCSVTL--RPLRYMPFEKIEKEILVNVRNGVENGIIHSEDV-LLYGAKPPSYIIPNEEK 287

Query: 251 LYSLSEIKGLVRLRYTTSHPR-------DMSDCLIKAHGDLDVLMPY----LHLPVQSGS 299
           L  L ++      +   +H              L+    ++ +          + V++GS
Sbjct: 288 LIKLHKLFKKHYKKVVWAHASLAAIVKGQQDSKLMDKLAEIIIDEHQSWWGAEIGVETGS 347

Query: 300 DRILKSMN----RRHTAYEYRQIIDRIRSVRPDIA--ISSDFIVGFPGETDDDFRATMDL 353
            R+ K +     +  +  ++ +I+     +  D+    +   I G P ET+DD   T++L
Sbjct: 348 PRLAKIIMPQKAKPFSTEKWPEIVLEGAGIMQDVGMQPAMTLIAGLPEETEDDIIKTLEL 407

Query: 354 VDKI 357
           VD +
Sbjct: 408 VDDL 411


>gi|296134341|ref|YP_003641588.1| Radical SAM domain protein [Thermincola sp. JR]
 gi|296032919|gb|ADG83687.1| Radical SAM domain protein [Thermincola potens JR]
          Length = 445

 Score = 74.6 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 54/288 (18%), Positives = 93/288 (32%), Gaps = 22/288 (7%)

Query: 90  LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149
            + + +    ++ VV+ G    A  EE     P  + VV  +      ++L     G  +
Sbjct: 76  YRTADLIRARNIPVVLGGIHVSALPEE---AMPHADAVVVGEAESVWAQILTDMEKG-TL 131

Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV-PYTRGIEISRSLS 208
               +        L   + G  + + V        GC + C FC V  Y  G    R + 
Sbjct: 132 KKLYHGERLPLNNLPHPETGLFKSKYVLGSFFTARGCPRRCRFCAVNKYFGGKVRLRPIP 191

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
           +VV E      +       L  N     G  +     +          I G         
Sbjct: 192 EVVAEI---ASSKRRLFWNLDDN---CWGISV---PRSIELYREMSVNISGKYWFGMGDL 242

Query: 269 HPRDMSD--CLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
              D      L+K      +L  Y+ +  ++ +   L+  N      + R  ID I+ +R
Sbjct: 243 GSLDHPRSEELLKWARRSGML--YVRVGWETSNPATLEYFNAH--VKQGRNRIDAIKKIR 298

Query: 327 -PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
              I +    IVG   +T+ DF   + L + +  A       +P   T
Sbjct: 299 AAGIDVMLFVIVGSRQDTEKDFEQVIRLSEDLDIA-VRPVMMTPLPET 345


>gi|302875143|ref|YP_003843776.1| Radical SAM domain-containing protein [Clostridium cellulovorans
           743B]
 gi|307690225|ref|ZP_07632671.1| Radical SAM domain-containing protein [Clostridium cellulovorans
           743B]
 gi|302578000|gb|ADL52012.1| Radical SAM domain protein [Clostridium cellulovorans 743B]
          Length = 564

 Score = 74.6 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 83/223 (37%), Gaps = 24/223 (10%)

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           V+D  +          I    Y             +GC   C+FC V    G    R + 
Sbjct: 244 VIDISHICTPNMTDFKIEQYPYIGTYA-------SKGCPNKCSFCTVVRNFGEYQERDID 296

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
             ++E + L +        +  ++       L          +Y    I G +R+   + 
Sbjct: 297 TTINEIKFLQEKYKKRAFFMLDSLMNPYITNLSNGIIQEDLSIY----IDGYLRI---SE 349

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
              D++  ++   G +  +     + V+SGS  +L  M++  +  + R  +  +      
Sbjct: 350 EVCDITKTMLWRKGGIYRVR----IGVESGSQHVLDLMSKGISVDQTRNALASL--SYAG 403

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYA----QAFSFKY 367
           I  ++ +++G PGET++DF  T+ L++         +   F+Y
Sbjct: 404 IKTTTYWVIGHPGETEEDFNQTLKLLESCKDDIWQAECHIFEY 446


>gi|227827796|ref|YP_002829576.1| radical SAM protein [Sulfolobus islandicus M.14.25]
 gi|229585067|ref|YP_002843569.1| Radical SAM domain protein [Sulfolobus islandicus M.16.27]
 gi|238619969|ref|YP_002914795.1| Radical SAM domain protein [Sulfolobus islandicus M.16.4]
 gi|227459592|gb|ACP38278.1| Radical SAM domain protein [Sulfolobus islandicus M.14.25]
 gi|228020117|gb|ACP55524.1| Radical SAM domain protein [Sulfolobus islandicus M.16.27]
 gi|238381039|gb|ACR42127.1| Radical SAM domain protein [Sulfolobus islandicus M.16.4]
 gi|323477605|gb|ADX82843.1| Radical SAM domain protein [Sulfolobus islandicus HVE10/4]
          Length = 506

 Score = 74.6 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 50/296 (16%), Positives = 101/296 (34%), Gaps = 18/296 (6%)

Query: 80  VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAE-GEEILRRSPIVNVVVGPQTYYRLPE 138
            Y     + N    +  +   + ++V G         E +     V+ +V  +    + +
Sbjct: 126 NYKSFQALINKPEIQEAKKRGMKILVGGPSTWQWLWREDMIEKVGVDTLVDGEGEKIIVK 185

Query: 139 LLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
           L +     + +    Y   D  +   I D    +   V   + I  GC + C FC V   
Sbjct: 186 LAQMILDNEPLPKYVYVSGD--DVPDIDDISEIKGASVNGMIEIMRGCARSCRFCSVTI- 242

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258
                   L ++  E +  +  GV    +   +V  +   G+         L   + +  
Sbjct: 243 -RPTRYYPLEKIEKELQTNVRAGVRHGVVHSDDVLFYGAVGIYPRPEPLIKLHTLVKKYY 301

Query: 259 G---LVRLRYTTSHPRDMSDCLI----KAHGDLDVLMPYLHLPVQSGSDRILKSMN---- 307
                           +    LI    +   D +     + + +++GS R+ K +     
Sbjct: 302 KTIAWSHASLAAIRYSEEKYGLISKLGEIIFDDEQRYLGVEVGIETGSVRLAKEIMPAKS 361

Query: 308 RRHTAYEYRQIIDRIRSVRPD--IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
             +   EY +I++    +  +  I  +   IVG P ET+DD   T++LVD +   +
Sbjct: 362 APYKPEEYPEIVEEAFKIMHENKIIPAGTMIVGLPEETEDDVYKTIELVDNLRPYR 417


>gi|163753828|ref|ZP_02160951.1| Fe-S protein, radical SAM family [Kordia algicida OT-1]
 gi|161326042|gb|EDP97368.1| Fe-S protein, radical SAM family [Kordia algicida OT-1]
          Length = 461

 Score = 74.6 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 30/207 (14%), Positives = 71/207 (34%), Gaps = 15/207 (7%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
           ++ Q GC   C +C           R    V  E + L +    +      +V +   K 
Sbjct: 199 VSTQRGCPYTCKWCSTAVYGQSYRRRPPEMVAAELKMLKETYNPDSIWFVDDVFSVSHKW 258

Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
           ++            + +   +  + +      +  +  I              +  +SGS
Sbjct: 259 IE-------KFHEEVIKQDAI--IPFECITRAERLNDEILQLLKEAGCFRIW-IGAESGS 308

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
            +I+ +M+RR      +  I +   +   +   +  +VG+PGE + D   T++ +     
Sbjct: 309 QKIIDAMDRRVDVDVVKTAIQKTNEL--GMETGTFIMVGYPGEDEQDIEETIEYLKAANP 366

Query: 360 AQAFSFKYSPRLGTPGSNMLEQVDENV 386
                    P  GT   ++  ++++ +
Sbjct: 367 THFTITVAYPIKGT---SLYNEIEDKI 390


>gi|292654931|ref|YP_003534828.1| radical HhH protein [Haloferax volcanii DS2]
 gi|291371972|gb|ADE04199.1| radical HhH [Haloferax volcanii DS2]
          Length = 565

 Score = 74.6 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 59/399 (14%), Positives = 126/399 (31%), Gaps = 50/399 (12%)

Query: 111 QAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR--FGKRVVDTDYSVEDKFERLSIVDG 168
            A G+++ R++   + V          +L++     FG R+ D +           +V+ 
Sbjct: 121 NAGGQDMERKNLDYDFVAKGDIEAAAYDLVDSGLEGFGNRMRDNEELDRWAAMGAFVVEQ 180

Query: 169 GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLL 228
             +    +   +    GC   C+FC  P        R+   VV E   L D G     L 
Sbjct: 181 HPSHPDHLICEMETSRGCAYRCSFCTEPLYGNPAF-RTADSVVKEVENLYDRGARHFRLG 239

Query: 229 GQ-NVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR-------LRYTTSHPRDMSDCLIKA 280
            Q ++ A+ G G          L   + E+   +           T     + S   ++ 
Sbjct: 240 RQADILAFGGDGEAPNPDALRRLYGGIREVAPDLGTLHLDNVNPITIVGWPEKSREALRI 299

Query: 281 HGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA-YEYR--QIIDRIRSVRPD--------- 328
             + +         ++S    + +  N   TA   +   +I++ +   RP          
Sbjct: 300 IAEHNTAGDTAAFGLESADPVVQEENNLNVTADECFEAVKIVNEVAGWRPGDDPADAPTH 359

Query: 329 ----------IAISSDFIVGFPGETDDDFRATMDLVDKIGYA------QAFSFKYSPRLG 372
                     +    + + G  GE ++ F      + ++ Y       +    +     G
Sbjct: 360 GSDAANRLPKLLPGINLLHGLKGEREETFEHNKRFLQRV-YDEGLMVRRINIRQVMAFDG 418

Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIE---VL--IEKHGKEKGK 427
           T   +M +    ++  +     +    E +   +   + ++     VL  +     + G+
Sbjct: 419 T---DMSD-TGADIARDHKQLFKTYKTEVREEIDRPMLRRVAPAGTVLPNVHLEYHQDGR 474

Query: 428 LVGR-SPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYG 465
             GR       +V       +G  I V + D    ++ G
Sbjct: 475 TFGRQLGTYPLLVGIPGERELGKTIDVAVVDHGYRSVTG 513


>gi|206603542|gb|EDZ40022.1| Putative radical SAM family protein [Leptospirillum sp. Group II
           '5-way CG']
          Length = 530

 Score = 74.6 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 57/297 (19%), Positives = 99/297 (33%), Gaps = 26/297 (8%)

Query: 79  KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPI-VNVVVGPQTYYRLP 137
           K  +   +   L    I+      V+V G       ++I++  P  V  VVG      + 
Sbjct: 136 KYKNEFNKKLRLIKEGIRLAPKARVMVGGGAFSVFADQIIKLLPEGVIGVVGEGEDAIVK 195

Query: 138 ELLERARFGKRVV---------------DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTI 182
            +  +     RV+                   S       L  V  G+         +  
Sbjct: 196 IVEGKPVDDDRVIYRKNGKTIRGKKEGGVAIRSAPYDLRYLESVFEGHEFYHRTMVGIQT 255

Query: 183 QEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGL 240
           + GC   C+FC+  Y  G  +  R    +V+E R+  D  G+           A    G+
Sbjct: 256 KRGCPYGCSFCLYTYIEGKRVYYRDPEDIVNEMRQYYDQWGIRNFWFAD----AQFIPGV 311

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300
                   DLL +L +  G+            +S  + K   +    M  L + V SGS 
Sbjct: 312 KAIPEAM-DLLKALRD-SGMKISWSGYIRTSLISPEMAKLMVESG--MGDLEVSVTSGSQ 367

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
            IL S+       +  +    +R       I  ++ +  PGET++  R ++   + I
Sbjct: 368 EILDSLRMGFRLDQLVEGCRNLRDAGYKGNIILNYSLNAPGETEETLRESIRSYESI 424


>gi|83592101|ref|YP_425853.1| Fe-S oxidoreductase [Rhodospirillum rubrum ATCC 11170]
 gi|83575015|gb|ABC21566.1| Fe-S oxidoreductase [Rhodospirillum rubrum ATCC 11170]
          Length = 484

 Score = 74.6 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 62/371 (16%), Positives = 116/371 (31%), Gaps = 64/371 (17%)

Query: 43  RMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR---------------- 86
            +  +    G+E V+++D A           +K    +   L                  
Sbjct: 31  YLAAILRENGFE-VDAIDLA---------FSDKPVADLRQKLRESDPRVVGFYTTTVTYY 80

Query: 87  -IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
               L  +  K+  + +  V G     E E  L  S   +VV   +  + + E  +    
Sbjct: 81  GTERLLAAVRKDHPEAITWVGGPHVSYEYETALASSGF-DVVFLFEAEHSVLEAAKVQLR 139

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAF------------------LTIQEGCD 187
           GK  +D    +  + +  +I      R++ +  F                  +    GC 
Sbjct: 140 GKGRLDDVAGIAFRRDGRTIKTTPRAREKSLDIFPYPARDLFPIKKYTRPGSIMSSRGCP 199

Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTF 247
             C FC+          RS   VV E + + +         G N   +        +   
Sbjct: 200 VKCIFCIASTFEDAYRYRSPENVVGEMKLMYEQW-------GINDFYFVDNVFTTYRARA 252

Query: 248 SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307
            ++   + E   L    Y  S        L++           + L V+SG   ++  M 
Sbjct: 253 REICRLIREAD-LPIGWYCVSRVDYAEPELMQDLASAG--CYRIELGVESGDPSVIGGMK 309

Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           +  +     +  D I ++   +     F VG P +T D   AT+ L ++I   +  +  Y
Sbjct: 310 KHISLAHVYRAADVILNL--GMQPMFTFQVGHPHDTLDSIEATLRLAEEIR--EMGAGAY 365

Query: 368 ----SPRLGTP 374
               +P  G P
Sbjct: 366 LSVTTPYPGAP 376


>gi|117924761|ref|YP_865378.1| radical SAM protein [Magnetococcus sp. MC-1]
 gi|117608517|gb|ABK43972.1| Radical SAM domain protein [Magnetococcus sp. MC-1]
          Length = 528

 Score = 74.6 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 54/290 (18%), Positives = 100/290 (34%), Gaps = 27/290 (9%)

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           I+   +          VVV G  A     E   R   ++ VV  +       L+E  R  
Sbjct: 76  IKRATDRIKTLAPHCTVVVGGPHAALCP-ESTVRYKHIDYVVPNEGEITAQRLIEALRHA 134

Query: 147 KRVVDTDYS------VEDKFERLS------------IVDGGYNRKRGVTAFLTIQEGCDK 188
            R+             +D +                ++D       G    +    GC  
Sbjct: 135 GRIDPAQIPGLAWIDEQDHYRCNPTEYVGFYDIDYELLDPKVKATYGQEVQVLSGRGCSF 194

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTF 247
            CTFC    +      RS   ++DE +++I+      I    +     +G+ L+      
Sbjct: 195 KCTFCYNVVSGQKWKGRSAKDILDEIQRIIERYQTRRIFFRDELFFHSKGRVLEF----L 250

Query: 248 SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307
                     + +  +R T      + + L+           +L +  +SGSD ILK + 
Sbjct: 251 DLYTSRNCNFEWIASVRATDFRDTFVDEALMSRMEQCG--CRFLRIGAESGSDEILKDIK 308

Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
           +       R+  + I +  P + + + F++G P E   D+ AT+DL+  +
Sbjct: 309 KGIKVENVRRTTEII-AKHPKVKLLAGFMIGLPTEQRKDYYATLDLIAWM 357


>gi|218659715|ref|ZP_03515645.1| hypothetical protein RetlI_08690 [Rhizobium etli IE4771]
          Length = 157

 Score = 74.6 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 28/151 (18%), Positives = 53/151 (35%), Gaps = 17/151 (11%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V ++GC++N Y+S  M+      G          + +++NTC +  +A  +         
Sbjct: 6   VLTFGCRLNTYESEVMKAQAEKAGLN--------NAVLVNTCAVTGEAVRQARQA----- 52

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
                  ++     ++V GC AQ E E     +  V+ V+G +             FG  
Sbjct: 53  --IRRARRDNPHARIIVTGCAAQTEKETFAAMA-EVDAVLGNEEKLSSASYRSLPDFGVS 109

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAF 179
             +    V D     +      +   G+ A 
Sbjct: 110 A-EEKLRVNDIMSVKATAPQMVSTSTGMCAP 139


>gi|323474864|gb|ADX85470.1| Fe-S oxidoreductase [Sulfolobus islandicus REY15A]
          Length = 506

 Score = 74.6 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 50/296 (16%), Positives = 101/296 (34%), Gaps = 18/296 (6%)

Query: 80  VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAE-GEEILRRSPIVNVVVGPQTYYRLPE 138
            Y     + N    +  +   + ++V G         E +     V+ +V  +    + +
Sbjct: 126 NYKSFQALINKPEIQEAKKRGMKILVGGPSTWQWLWREDMIEKVGVDTLVDGEGEKIIVK 185

Query: 139 LLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
           L +     + +    Y   D  +   I D    +   V   + I  GC + C FC V   
Sbjct: 186 LAQMILDNEPLPKYVYVSGD--DVPDIDDISEIKGASVNGMIEIMRGCARSCRFCSVTI- 242

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258
                   L ++  E +  +  GV    +   +V  +   G+         L   + +  
Sbjct: 243 -RPTRYYPLEKIEKELQTNVRAGVRHGVVHSDDVLFYGAVGIYPRPEPLIKLHTLVKKYY 301

Query: 259 G---LVRLRYTTSHPRDMSDCLI----KAHGDLDVLMPYLHLPVQSGSDRILKSMN---- 307
                           +    LI    +   D +     + + +++GS R+ K +     
Sbjct: 302 KTIAWSHASLAAIRYSEEKYGLISKLGEIIFDDEQRYLGVEVGIETGSVRLAKEIMPAKS 361

Query: 308 RRHTAYEYRQIIDRIRSVRPD--IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
             +   EY +I++    +  +  I  +   IVG P ET+DD   T++LVD +   +
Sbjct: 362 APYKPEEYPEIVEEAFKIMHENKIIPAGTMIVGLPEETEDDVYKTIELVDNLRPYR 417


>gi|284161772|ref|YP_003400395.1| radical SAM protein [Archaeoglobus profundus DSM 5631]
 gi|284011769|gb|ADB57722.1| Radical SAM domain protein [Archaeoglobus profundus DSM 5631]
          Length = 495

 Score = 74.6 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 44/287 (15%), Positives = 113/287 (39%), Gaps = 24/287 (8%)

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
              NL  +       + V++ G  A     +       V+ ++  +  Y + E+  +A  
Sbjct: 122 EFVNLMKTLEPYRDRIKVIIGGAGAWQFEWD-EYWKSKVDCIIIGEGEYVVAEVFRKALR 180

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G+ +         + E +  +     ++  +   + I  GC + C FC    T  ++   
Sbjct: 181 GEELPKIVRGKPARVEDIPTI-----KRPSINGLIEISRGCGRGCKFC--SETLKLKRDI 233

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD--GEKCTFSDLLYSLSEIKGLVRL 263
            + +VV+EA+  +      + L  ++V  +  K       +     L  ++SE+ G + +
Sbjct: 234 PIQKVVEEAKVCVRE-TRSVILHAEDVLLYGCKDPKFIPNEEKVLKLFKAVSEVTGYIGV 292

Query: 264 RYTTSHPRDMSDCLIKAHGD-----LDVLMPYLHLPVQSGSDRILKSMNRR-----HTAY 313
            + +         +++   +       + M  +   V++GS R+++   R      H + 
Sbjct: 293 SHCSLAAVVSKPSIVEGINEIVGMGERINMFGVQTGVETGSTRLMEKYMRGKCLPFHPSE 352

Query: 314 EYRQIIDRIRSVRP--DIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
               +++   ++    +   ++  I+G P E ++D   T++LV+++ 
Sbjct: 353 W-CDVVEEAFAIMHENNWVPAATLIIGLPDEREEDVVKTIELVERLR 398


>gi|294054400|ref|YP_003548058.1| Radical SAM domain protein [Coraliomargarita akajimensis DSM 45221]
 gi|293613733|gb|ADE53888.1| Radical SAM domain protein [Coraliomargarita akajimensis DSM 45221]
          Length = 444

 Score = 74.6 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 45/310 (14%), Positives = 100/310 (32%), Gaps = 26/310 (8%)

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135
           A   + + +     L +   + G  + VV+ G    +  EE  + +  V +  G      
Sbjct: 78  AISSLSATILEAYALADRYREAG--VQVVLGGLHVSSCPEEASQHADAVMIGEG---EPL 132

Query: 136 LPELLERARFGK-RVVDTDYSVEDKFERLSIVDGGY-NRKRGVTAFLTIQEGCDKFCTFC 193
            P+L+E  + G+ + +    S         I      +  R     +  Q GC   C FC
Sbjct: 133 WPKLVEDLKRGQLQGIYDSRSTPYNLADAPIPRFDLLDPDRYNRITVQTQRGCPWNCEFC 192

Query: 194 VVP-YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLY 252
                      ++ + +VV E   +             +            K    +L  
Sbjct: 193 AASIRLAPGFKTKPIDKVVAEINAVKAVWESPFIEFADDNTF-------ANKRRGRELAR 245

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD-----RILKSMN 307
           ++ ++     +R+ T     +++  +            + + ++S          LK   
Sbjct: 246 AMRDLD----VRWFTETDISIAEDPVLLRELKPAGCAQILVGLESPDAAELQGVELKRNW 301

Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           ++    +Y + I RI+     + ++  F++G   +T + F      +   G  +      
Sbjct: 302 KQRQRDQYLRSIARIQDA--GVTVNGCFVLGLDTQTVESFETMWQFIQDSGLYEVQITVM 359

Query: 368 SPRLGTPGSN 377
           +   GTP   
Sbjct: 360 TAFPGTPLYR 369


>gi|163853462|ref|YP_001641505.1| magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative
           cyclase [Methylobacterium extorquens PA1]
 gi|163665067|gb|ABY32434.1| magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative
           cyclase [Methylobacterium extorquens PA1]
          Length = 508

 Score = 74.6 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 56/321 (17%), Positives = 98/321 (30%), Gaps = 40/321 (12%)

Query: 99  GDLLVVVAGCVAQAEGEEILRRSPIVNVVV---GPQTYYRLPELLERARFGKRVVDTDYS 155
             + +V  G      G EIL   P V  +V   G +T  RL   L   R    V    Y 
Sbjct: 94  PGVTIVYGGVFPTYHGREILEAEPHVAAIVRGEGEETARRLMAALAAGRSLGTVPGLAYR 153

Query: 156 VEDKFERLSIVDGGYNRKRGVTAF------------------LTIQEGCDKFCTFCVVPY 197
             D            +       +                  +    GC   CT+C    
Sbjct: 154 DGDAIRETPPAPLIRDLDAYRIGWELIDHARYSYWGGLRAVVVQFSRGCPHPCTYCGQRG 213

Query: 198 TRGIEISR-SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256
                  R  +    + AR   ++GV  I    +N           +K   + L   ++E
Sbjct: 214 FWTRWRHRDPVRFAAELARLHREHGVRVINFADENPTVS-------KKVWRTFLEALIAE 266

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
              L+ +  T +        ++  +           L ++S     L  + +  T    R
Sbjct: 267 NVDLILVGSTRADDIVRDADILPLYKRAG--WERFLLGLESTDTTTLDLIRKGATTTTDR 324

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
           + I  +R+    I   + ++VGF  E D D+   +  +      Q      +P   TP  
Sbjct: 325 EAIRLLRAN--GILSMATWVVGFEEERDRDYWRGLRQLLAYDPDQIQMLYVTPHRWTPYF 382

Query: 377 NMLEQVDENVKAERLLCLQKK 397
            + E         R++ L ++
Sbjct: 383 RLAE-------ERRVIQLDRR 396


>gi|323135739|ref|ZP_08070822.1| Radical SAM domain protein [Methylocystis sp. ATCC 49242]
 gi|322398830|gb|EFY01349.1| Radical SAM domain protein [Methylocystis sp. ATCC 49242]
          Length = 523

 Score = 74.6 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 53/309 (17%), Positives = 104/309 (33%), Gaps = 43/309 (13%)

Query: 55  RVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG 114
            V+    AD I++ T  +         S  GR+  + ++  + G    VV+ G  A    
Sbjct: 61  PVDYDHPADWILI-TGKV---------SQRGRMTAIADAFRRRGK--KVVIGGPYASLSP 108

Query: 115 EEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGG-YNRK 173
             +       +V+V  +      ++    R G R  D  +  +             Y   
Sbjct: 109 ARLRDHC---DVMVCGEAEEIAGKVFADLRAG-RPNDAYFGDKPSLALTPAPRWDLYPND 164

Query: 174 RGVTAFLTIQEGCDKFCTFC-VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNV 232
           R +   +    GC   C FC V+ Y    +  + ++ V+ E   L   G     L   N 
Sbjct: 165 RALLGAVQTSRGCPFECEFCDVIQYLGRRQRHKPIAHVIAELDALWAQGYRAAFLADDNF 224

Query: 233 NAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL----- 287
            A+R           +     L+ I    R          ++   I A  D ++L     
Sbjct: 225 TAYR-----------AHCKELLAAIADWRRDHPMDF----VTQISIDATRDEELLDMCVA 269

Query: 288 --MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR-PDIAISSDFIVGFPGETD 344
             +  + + +++ +   L+   +R        ++D ++ +    I++    IVGF  +  
Sbjct: 270 AGLNQVFVGIETPNIESLRETGKR--QNLKINLVDEVQKLVDHGISVMGGMIVGFDHDGP 327

Query: 345 DDFRATMDL 353
           + F    D 
Sbjct: 328 NVFAQQYDF 336


>gi|219849136|ref|YP_002463569.1| Radical SAM domain-containing protein [Chloroflexus aggregans DSM
           9485]
 gi|219543395|gb|ACL25133.1| Radical SAM domain protein [Chloroflexus aggregans DSM 9485]
          Length = 461

 Score = 74.6 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 50/299 (16%), Positives = 95/299 (31%), Gaps = 26/299 (8%)

Query: 99  GDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVED 158
            +  +V  G  A      +       +  +G +    L  + +R   G+R    D    +
Sbjct: 78  PNAFIVCYGLYAPLNAAMLRTA--GADCCLGGEVEELLTTIWQRLAAGERPPAVDAIALN 135

Query: 159 KFERLSIVDGGYNRKRGVTA-----------FLTIQEGCDKFCTFC-VVPYTRGIEISRS 206
           + + +     G                    +     GC   C  C VVP   G      
Sbjct: 136 RLDLVPPDRSGLPPLNRYATLINGAETRLAGYTETTRGCKHLCRHCPVVPVYNGRFRVVP 195

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
              V+ + R  +  G   IT    +        L+G       +    +E   L      
Sbjct: 196 RETVLADIRDQVAAGARHITFGDPD-------FLNGPGHVLPIVRAMHAEFPDLTYDVTI 248

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
                     L+        +M      V++  D IL    +RHT  +  + +  +R+  
Sbjct: 249 KVEHILRYAHLLPELRATGCIM--AVSAVEALDDEILARFAKRHTRADVARAVALLRAN- 305

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGY-AQAFSFKYSPRLGTPGSNMLEQVDE 384
            DIA+++ F+   P  T   +R  +  + ++G        +Y  RL  P  + L ++ +
Sbjct: 306 -DIALNATFVAFTPWTTRQIYRDLLLGIAELGLIESVAPVQYGLRLLIPAGSRLLELPD 363


>gi|169835861|ref|ZP_02869049.1| Radical SAM [candidate division TM7 single-cell isolate TM7a]
          Length = 450

 Score = 74.6 bits (182), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 54/330 (16%), Positives = 104/330 (31%), Gaps = 38/330 (11%)

Query: 48  FFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAG 107
              +  E ++  +DAD++V+    +    A   Y    R R              V++ G
Sbjct: 45  LIDERVEAIDYNNDADVVVI---TLETYTARHGYEIAKRFREKGKK---------VIIGG 92

Query: 108 CVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVD 167
             A    +E        + VV         E++E  R G         + +KF    I D
Sbjct: 93  THASLVPDE---AMKHADSVVTGYADDIWGEIIEDYRNGTEKKLYIGGLSNKF---LIPD 146

Query: 168 GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR-GIEISRSLSQVVDEARKLIDNGVCEIT 226
               +K+ + + +    GC   C FC +          R +  V++E + +       I 
Sbjct: 147 RSIFKKKYLISVVETGRGCPHHCEFCAISAVNKKRYAKRPVDSVIEELKHIKS---KYIF 203

Query: 227 LLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV 286
               N  A        +     +L   +  +K         +     ++ L+ A  D   
Sbjct: 204 FADDNFVA--------DPKYALELCEKIKPLKKKW--ISQGAITMAKNEKLLAAMRDSG- 252

Query: 287 LMPYLHLPVQSGSDRILKSMNRRHTAY--EYRQIIDRIRSVRPDIAISSDFIVGFPGETD 344
              ++ +  +S +   L +M +  +    +  +    I     +I I + F+ GF  +  
Sbjct: 253 -CLFILIGYESINKEALDNMKKEWSYKLGDIEESTRIIHKY--NIGIYATFVFGFEEKIG 309

Query: 345 DDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
             F  T+    K            P   T 
Sbjct: 310 TTFEDTVRFAQKNHLEFVQFNYLVPFPNTE 339


>gi|110597823|ref|ZP_01386106.1| Radical SAM [Chlorobium ferrooxidans DSM 13031]
 gi|110340548|gb|EAT59031.1| Radical SAM [Chlorobium ferrooxidans DSM 13031]
          Length = 500

 Score = 74.6 bits (182), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 57/334 (17%), Positives = 112/334 (33%), Gaps = 33/334 (9%)

Query: 55  RVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG 114
           R + +  AD+  ++   +++++A KV              +     L +V  G +  +E 
Sbjct: 59  RADDIAWADMAFISAMAVQQESARKVIE------------LCNTAGLTIVAGGPLFTSEH 106

Query: 115 EEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKR 174
           E+     P V+  V  +    L   L+    G         +     R            
Sbjct: 107 EDF----PSVDHFVLNEAELTLQPFLDDLLNGSPKKLYSTDLFADISRTPTPQWKLLDMN 162

Query: 175 GVTAF-LTIQEGCDKFCTFCVVPYTRG-IEISRSLSQVVDEARKLIDNG-VCEITLLGQN 231
              +  L    GC   C FC V    G    +++  Q++ E   L   G    I  +  N
Sbjct: 163 KYASMALQFSRGCPYKCDFCNVTALLGHKIRTKTSDQIITELDALRRLGWQDSIFFVDDN 222

Query: 232 VNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPR---DMSDCLIKAHGDLDVLM 288
             A +             L   ++  KG  R     +           L+    +    M
Sbjct: 223 FIAHKTYLKK------ELLPRLIAWQKGYSRTIRFYTECSINLADDQELMSLMVEAGFGM 276

Query: 289 PYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR-PDIAISSDFIVGFPGETDDDF 347
             + + +++  D  L +  ++H     R ++  IR ++   + +   FIVGF  +T   F
Sbjct: 277 --VFIGIETPDDAALHACGKQHNTS--RDMLSNIRKIQQSGMEVQGGFIVGFDSDTPSIF 332

Query: 348 RATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +  ++ + K G   A         GT   + +++
Sbjct: 333 QKQIEFIQKSGIVTAMVGILQALPGTRLYDRMQK 366


>gi|197117551|ref|YP_002137978.1| cobalamin-binding radical SAM domain-containing iron-sulfur
           cluster-binding oxidoreductase [Geobacter bemidjiensis
           Bem]
 gi|197086911|gb|ACH38182.1| cobalamin-binding radical SAM domain iron-sulfur cluster-binding
           oxidoreductase [Geobacter bemidjiensis Bem]
          Length = 444

 Score = 74.6 bits (182), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 53/284 (18%), Positives = 96/284 (33%), Gaps = 17/284 (5%)

Query: 99  GDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVED 158
             + VV  G  A A  EE        + VV  +     P++L+  R G  +       + 
Sbjct: 80  RGIKVVFGGMHASAMPEEAKEHG---DAVVIGEGESCWPQVLKDFRAG-TLQPFYRGEQV 135

Query: 159 KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV-PYTRGIEISRSLSQVVDEARKL 217
           +   L     G          +    GC   CTFC V P+  G    R +  VV +   +
Sbjct: 136 ELSDLPTPLYGSLGGGHQFRIVNTSRGCPFNCTFCSVKPFFGGKIRFRPIEHVVRDVAAI 195

Query: 218 IDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCL 277
            +           N +               DL  +L    G   + + +  P       
Sbjct: 196 PEKMY-------INGDENIWWPGTENMQRAIDLFTALRG-TGKKWMGFGSLGPVLAPLGS 247

Query: 278 IKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI-IDRIRSVRPDIAISSDFI 336
              +   D  M  + +   + +D  LK+          R+  +  +R     I +S  ++
Sbjct: 248 KMLNAARDCGMLTVWVGWDAMTDEGLKAYAANGKIGVDRERAVRTLRD--HGIDVSLFYM 305

Query: 337 VGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           +G   ++ DDF+ +++L D++G +        P  GT  +   E
Sbjct: 306 LGSRDDSLDDFKRSVELADRLGVS-MHPSLVVPYPGTELARQYE 348


>gi|91201938|emb|CAJ74998.1| conserved hypothetical protein [Candidatus Kuenenia
           stuttgartiensis]
          Length = 452

 Score = 74.2 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 65/333 (19%), Positives = 121/333 (36%), Gaps = 45/333 (13%)

Query: 71  HIREKAAEKVYSFLGRIRNLK--NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVV 128
            +R      +   +   ++LK     I+     ++++ G  A    E++L      + V+
Sbjct: 43  SVRNIDNNDMLHPVAFYKDLKLLVDAIRSKTKAMLILGGAGAGVMPEQLLN-YTGADWVI 101

Query: 129 GPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSI------------VDGGYNRKRGV 176
                   PE+L+     ++ +       +      I            V   + R   V
Sbjct: 102 TGNGEVVFPEVLDVLSKNEKPIHVPGIAWNDKTGFKINTHSGNNFLLNNVIPDFRRWINV 161

Query: 177 TAF------LTIQE--GCDKFCTFCVVPYTRGIEISRSL---SQVVDEARKLIDNGVCEI 225
            A+      + IQ   GC   C +C      G  IS  L    QV +   +L  +G+ +I
Sbjct: 162 PAYLSRFSTIPIQTKLGCHFQCVYCTYRKLEG--ISYRLCDSEQVANAIIELTKSGMKDI 219

Query: 226 TLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLD 285
             +    N+  G  LD        +  S+++     R +    +P  + D L+       
Sbjct: 220 EFVDNVFNSPYGHALD--------ICDSIAKTGINARFQTVELNPLFIDDKLLHVMERAG 271

Query: 286 VLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV-RPDIAISSDFIVGFPGETD 344
            +   + + ++S +D +L+ + +  TA E  +  + IR    P + I   F+ G PGET+
Sbjct: 272 FV--GVGITIESAADPVLERLKKGFTAREIYRSSEIIRKHTMPCLWI---FMFGGPGETE 326

Query: 345 DDFRATMDLVDK-IGYAQAFSFKYSPR--LGTP 374
           D    T+D   + I       F    R   GT 
Sbjct: 327 DTVMETLDFAKRQIRPEDVALFMIGIRIYPGTE 359


>gi|303246926|ref|ZP_07333202.1| Radical SAM domain protein [Desulfovibrio fructosovorans JJ]
 gi|302491633|gb|EFL51516.1| Radical SAM domain protein [Desulfovibrio fructosovorans JJ]
          Length = 508

 Score = 74.2 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 58/326 (17%), Positives = 105/326 (32%), Gaps = 38/326 (11%)

Query: 57  NSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEE 116
             +  +D++ ++   ++E  A+     + R + +            +V  G    A+ E 
Sbjct: 61  EDLAWSDMVFISAMVVQEAGAK---DVIARAKAM---------GKRIVAGGPAFTAQPE- 107

Query: 117 ILRRSPIVNVVVGPQTYYRLPELLERARFG-KRVVDTDYSVEDKFERLSIVDGGYNRKRG 175
              R   V+  V  +    LP  LE  R G  + + T     D            N +  
Sbjct: 108 ---RFQGVDHFVLNEAETTLPLFLEDLRRGAPKPLYTTSERPDIACTPIPQWDLINFRDY 164

Query: 176 VTAFLTIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVCEITLLGQNVNA 234
           VT  +    GC   C FC +    G     +S  Q++ E   L D G      +  +   
Sbjct: 165 VTMSVQYSRGCPFDCEFCDIVVLNGRRPRVKSPDQMLHEIESLHDAGWRGPVFIVDD--- 221

Query: 235 WRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD------MSDCLIKAHGDLDVLM 288
                  G   +    L  L  I    R  Y      +          L+      +   
Sbjct: 222 ----NFIGNIASVKQFLPRL--IDWQTRHGYPFKFMTEASINLARDGELVGMMSKAN--F 273

Query: 289 PYLHLPVQSGSDRILKSMNRRHTAY-EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDF 347
             + + +++ S   LK   ++     ++ Q I  +      + +   FIVGF  +T+  F
Sbjct: 274 HKVFIGIETPSTDSLKECGKKQNVAIDFPQAIKILHQN--GLQVMGGFIVGFDSDTEGIF 331

Query: 348 RATMDLVDKIGYAQAFSFKYSPRLGT 373
              +  + KIG   A     +    T
Sbjct: 332 EQQIRFIQKIGVVTAMVGILTAMPKT 357


>gi|326204097|ref|ZP_08193958.1| cobalamin B12-binding domain protein [Clostridium papyrosolvens DSM
           2782]
 gi|325985864|gb|EGD46699.1| cobalamin B12-binding domain protein [Clostridium papyrosolvens DSM
           2782]
          Length = 581

 Score = 74.2 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 38/289 (13%), Positives = 104/289 (35%), Gaps = 29/289 (10%)

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G + ++     K   D  +++ G     + ++I+  +  V+ ++  +    +P LL+  
Sbjct: 67  IGIVLSISKELKKLLPDCSIILGGPEVSYDSQQIMCANEAVDFIISGEGEDVVPVLLKDM 126

Query: 144 RFGKR----------------VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFL--TIQEG 185
             G +                V +  +++  + +++         K  +   +      G
Sbjct: 127 YAGTQEYKALQGIAYRNGCSVVNNKGFNLVKELDKIPSPYNSELMKTTLNRIVYYESSRG 186

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C   C++C+     G     S+ +V  +  ++++     I  + +  N          + 
Sbjct: 187 CPFSCSYCISSTFNG-IRFFSMERVKSDICRILEYKPRLIKFVDRTFNCH--------RE 237

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
              ++L  L  +       +  +        ++    +       L + +Q+ + + LK 
Sbjct: 238 RAKEVLRFLISLNCETVFHFEAAADL-FDCEMLDILREAPKGRIQLEIGIQTINTQTLKE 296

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           ++R        + + +I S   +I +  D I G P E  + F+ + + V
Sbjct: 297 IDRVTDIDVLTKNVQKILSA-GNIHVHLDLIAGLPYENFEGFQKSFNYV 344


>gi|239906410|ref|YP_002953151.1| hypothetical protein DMR_17740 [Desulfovibrio magneticus RS-1]
 gi|239796276|dbj|BAH75265.1| hypothetical protein [Desulfovibrio magneticus RS-1]
          Length = 647

 Score = 74.2 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 49/263 (18%), Positives = 94/263 (35%), Gaps = 33/263 (12%)

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI-EISRS 206
           + +D  Y++    +              +   L I  GC   C+FC +   +G    SRS
Sbjct: 284 KTLDALYALPYSRQPHPSYKLPIPAADMIRGSLNIHRGCAGGCSFCTLALHQGRAIRSRS 343

Query: 207 LSQVVDEARKLIDNGVCEITLLGQ--------------NVNAWR---------GKGLDGE 243
              V+ EA +L+D    + ++                 ++ + +          K    +
Sbjct: 344 AGSVLREAARLVDAPGFDGSVSDVGGPSANMWGGRCRGDMTSCQRPSCLTPTICKHFSVD 403

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMP--YLHLPVQSGSDR 301
           +  F DLL +++E+ G+  +R  +    D++     A G +          +  +  SDR
Sbjct: 404 QGAFVDLLEAVAEVPGVRHVRVASGWRMDLALADEDALGRMVRRFTGGQAKVAPEHQSDR 463

Query: 302 ILKSMNRRHTA--YEYRQIIDRIR-SVRPDIAISSDFIVGFPGETDDDFRATMDLV--DK 356
           +LK M +   A    + ++ +R       +  +    +  FPG T +D R   +      
Sbjct: 464 VLKLMRKPPFAVFERFLKVFERESGRAGKEQYVVPYLMSAFPGCTLEDMRRMAEWFAGKG 523

Query: 357 IGYAQAFSFKYSPRLGTPGSNML 379
               Q   F   P  GT  + M 
Sbjct: 524 WRPNQVQCFI--PLPGTAAAAMY 544


>gi|284009139|emb|CBA76158.1| hypothetical protein ARN_33810 [Arsenophonus nasoniae]
          Length = 119

 Score = 74.2 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 28/138 (20%), Positives = 51/138 (36%), Gaps = 19/138 (13%)

Query: 45  EDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVV 104
                + GY+ V S  DADL+++NTC   + A ++    +G              +  V+
Sbjct: 1   MTELRTDGYQIVASYHDADLVIVNTCGFIDSAVQESLEAIGEA---------LNENGKVI 51

Query: 105 VAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLS 164
           V GC+  A+ ++I    P V  + GP +Y ++   +                +       
Sbjct: 52  VTGCLG-AKEDQIREVHPKVLAITGPHSYEQMLAHVHHY---------VPKPQHNPFFSL 101

Query: 165 IVDGGYNRKRGVTAFLTI 182
           +   G        A+L I
Sbjct: 102 VPQQGIKLTPKHYAYLKI 119


>gi|310658457|ref|YP_003936178.1| adenosylcobamide-dependent radical sam superfamily protein
           [Clostridium sticklandii DSM 519]
 gi|308825235|emb|CBH21273.1| putative adenosylcobamide-dependent radical SAM superfamily protein
           [Clostridium sticklandii]
          Length = 601

 Score = 74.2 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 50/318 (15%), Positives = 108/318 (33%), Gaps = 47/318 (14%)

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
            L ++  +   DL++++ G     +    + +   ++ ++  +    LP+L++     K+
Sbjct: 72  KLCSTLKEANPDLIIILGGPEVSFDSLNFINKHSYIDYIIKGEGELVLPKLIDSISKFKK 131

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGV-------------------------------- 176
            ++ D  V    E     D  YN    +                                
Sbjct: 132 HIEIDGVVYKSNELPPYSDYRYNTHEDIYFIENKDTPPIADLSQIKSPYLYVTEEEIENK 191

Query: 177 TAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR 236
             +     GC   C++C+    +G      L  V  + +KL+     +I  + +  N+  
Sbjct: 192 IVYFETSRGCTFNCSYCLSSTLKG-VRFFPLESVKQDLKKLVVLNAKQIKFVDRTFNSH- 249

Query: 237 GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQ 296
                  K     L+  L EI       +       + D  +K   +    +    + VQ
Sbjct: 250 -------KEITLALIKFLKEIDNGKINFHFEITAHMLDDEFMKEIKEARYGLFQFEIGVQ 302

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV-- 354
           S + + +K++NR     +    +++I+    +I    D I G P E  + F+ + + V  
Sbjct: 303 STNSKTIKTVNRIDNFEKLSVRVNQIKKY-GNIHQHLDLIAGLPYENLESFKKSFNDVFA 361

Query: 355 ---DKIGYAQAFSFKYSP 369
              + +        K SP
Sbjct: 362 LLPEALQLGFLKMLKGSP 379


>gi|254168608|ref|ZP_04875451.1| radical SAM domain protein [Aciduliprofundum boonei T469]
 gi|289595743|ref|YP_003482439.1| Radical SAM domain protein [Aciduliprofundum boonei T469]
 gi|197622442|gb|EDY35014.1| radical SAM domain protein [Aciduliprofundum boonei T469]
 gi|289533530|gb|ADD07877.1| Radical SAM domain protein [Aciduliprofundum boonei T469]
          Length = 524

 Score = 74.2 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 48/315 (15%), Positives = 113/315 (35%), Gaps = 27/315 (8%)

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVA-QAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           +R +++ R K+G    + V G  + Q E +E L     V+ ++  +T + + ++      
Sbjct: 130 MRRIRDYREKKGYKFKIEVGGPGSWQLEVKEKLTEELRVDHIMIGETEHVIGDVFRDIES 189

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           G            K E +  +             + +  GC + CTFC  P  R      
Sbjct: 190 GNAEKIIHIKSWPKLEEIPNIVAPT-----FKGMIEVMRGCGRGCTFCS-PNLRTA-RFY 242

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG---LDGEKCTFSDLLYSLSEIKGLVR 262
            + +++ E +  I  G     L  +++  +  +        +     L   + +      
Sbjct: 243 PIEKILAELKVNIRAGQKTAWLHSEDIFNYMVEDRRNFYPNEDAVIGLFEEVLKHVEFAN 302

Query: 263 LRYTTSHPRDMSDCLIKAHGDLD--VLMPY--LHLPVQSGSDRILKSM----NRRHTAYE 314
             + T+     +  ++K   +L+   +  +  + +  ++ S  ++K +     +  +  E
Sbjct: 303 PTHGTAAGGLAAPRILKRVAELNHANINRWVGIQVGFETASPELIKRIANNKMKPFSPEE 362

Query: 315 YRQIIDRIRSVRPDI--AISSDFIVGFPGETDDDFRATMDLVDKI------GYAQAFSFK 366
           +  ++              +   IVG PGETD+D   T  L+  +         +   F 
Sbjct: 363 WPWVLLNGTYAFNKFFWFPAYTSIVGLPGETDEDGYDTARLIITMEKKLREKLGEKAHFT 422

Query: 367 YSPRLGTPGSNMLEQ 381
            +P    P + + ++
Sbjct: 423 VTPLAFVPMAALKDE 437


>gi|294783750|ref|ZP_06749074.1| BchE/P-methylase family protein [Fusobacterium sp. 1_1_41FAA]
 gi|294480628|gb|EFG28405.1| BchE/P-methylase family protein [Fusobacterium sp. 1_1_41FAA]
          Length = 446

 Score = 74.2 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 57/317 (17%), Positives = 107/317 (33%), Gaps = 36/317 (11%)

Query: 61  DADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRR 120
           +AD+IV+ +       +++ Y++    R            + VV+ G       EE  + 
Sbjct: 60  EADIIVMTS---ITGTSQRCYAYADYFRQ---------RGITVVLGGVHPSLMPEEASQ- 106

Query: 121 SPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGV--TA 178
               +VV+        P++L   + G        + E   +   I      +K     TA
Sbjct: 107 --HADVVMVGFAEQTFPQMLLDFKNGSLKRMYIQNKEFNLDNKVIPRRELLQKDKYITTA 164

Query: 179 FLTIQEGCDKFCTFCVVPYTRGIEIS-RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG 237
            + +  GC   CTFC  P   G +I  R + +V+ E     +     I     N+ A   
Sbjct: 165 TVEVVRGCSLPCTFCAYPTAFGRKIYKRPIKEVLSEIEMFSE---KIILFPDVNLIA--- 218

Query: 238 KGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQS 297
                ++     L   +  +        T+S   D +  +IK   D       L +  +S
Sbjct: 219 -----DREYAMRLFKEMKSLNKYWMGLVTSSVGIDEN--MIKTFADSG--CKGLLIGFES 269

Query: 298 GSDRILKSMNRRHT-AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
            +      +N+      +Y +++ ++      I +   F  G   E    F  T++ V K
Sbjct: 270 ITQESQSYINKGINKVADYAELMKKLHDY--GILVQGCFAFGSDEEDTSVFERTVEAVVK 327

Query: 357 IGYAQAFSFKYSPRLGT 373
                      +P   T
Sbjct: 328 AKIDLPRYSILTPFPKT 344


>gi|327312397|ref|YP_004327834.1| putative coproporphyrinogen dehydrogenase [Prevotella denticola
           F0289]
 gi|326946389|gb|AEA22274.1| putative coproporphyrinogen dehydrogenase [Prevotella denticola
           F0289]
          Length = 434

 Score = 74.2 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 54/266 (20%), Positives = 93/266 (34%), Gaps = 52/266 (19%)

Query: 186 CDKFCTFC----VVPYTR-GIEIS---RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG 237
           C   C +C     VP    G   S   R +  +  E     D          + + +   
Sbjct: 11  CASRCIYCGFYSTVPSGGEGKGKSVEERYVDAMCHEMELRTDEEAASGGETAE-LTSIYL 69

Query: 238 KGLDGEKCTFSDLLYSLSEIKGLVRLRY--------------------TTSHPRDMSDCL 277
            G    + +F  L      I+ +  L +                       +P D++   
Sbjct: 70  GGGTPSQLSFQSLHRLFHTIETVYHLPFRRDMGTDRRQGCAAAPIEVTMECNPDDVTAEF 129

Query: 278 IKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIV 337
            +    L   +  + + +Q+ SD  L+ ++RRHTA E    + R+R       IS D + 
Sbjct: 130 ARRLRSLP--VNRISMGMQTFSDERLRFLHRRHTAAEAVSAVGRLREAGIG-NISVDLMF 186

Query: 338 GFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQK- 396
           GFPGET +++ A +  V ++G     ++      GTP   +               LQ  
Sbjct: 187 GFPGETLEEWEADIAHVLELGAEHISAYSLMYEEGTPLYRL---------------LQAG 231

Query: 397 KLREQQVSFNDACVGQIIEVLIEKHG 422
           K+RE              +VLI++ G
Sbjct: 232 KVREMDDELYRKM----YDVLIDRLG 253


>gi|148262595|ref|YP_001229301.1| radical SAM domain-containing protein [Geobacter uraniireducens
           Rf4]
 gi|146396095|gb|ABQ24728.1| Radical SAM domain protein [Geobacter uraniireducens Rf4]
          Length = 445

 Score = 74.2 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 52/280 (18%), Positives = 99/280 (35%), Gaps = 23/280 (8%)

Query: 99  GDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVED 158
             + VV  G  A A  EE        + VV  +     PE+L   R G+      +   +
Sbjct: 80  RGIKVVFGGMHASAMPEEAKSHG---DAVVIGEAESAWPEVLRDFRAGQ---LKPFYRGE 133

Query: 159 KFERLSIVDGGYNRKRGVTAFLTI--QEGCDKFCTFCVV-PYTRGIEISRSLSQVVDEAR 215
           +     +    Y +  G   F  I    GC   CTFC V P+       R +  VV +  
Sbjct: 134 QLPLNDLPTPLYGKLGGGHQFRVINTSRGCPYNCTFCSVKPFFGASIRFRPIEDVVRDVC 193

Query: 216 KLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSD 275
            + +            +N       +G +    DL  +L ++     + + +  P     
Sbjct: 194 AIPEKMY---------INGDENIWWEGFEQRAIDLFTAL-KVAKKKWMGFGSLRPVLSPA 243

Query: 276 CLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI-IDRIRSVRPDIAISSD 334
                +   +  M  + +   + SD  L +          R+  +  +R     I +S  
Sbjct: 244 GSRMLNAARESGMLTVWVGWDAISDESLTAYKANGKVGVDRERAVRTLRD--HGIDVSLF 301

Query: 335 FIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
           +++G   ++ DDF+ ++++ D++G +        P  GT 
Sbjct: 302 YMLGSREDSLDDFKRSVEVADRLGVS-MHPSLVVPYPGTE 340


>gi|323698793|ref|ZP_08110705.1| Radical SAM domain protein [Desulfovibrio sp. ND132]
 gi|323458725|gb|EGB14590.1| Radical SAM domain protein [Desulfovibrio desulfuricans ND132]
          Length = 465

 Score = 74.2 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 58/309 (18%), Positives = 100/309 (32%), Gaps = 44/309 (14%)

Query: 81  YSFLGR--IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPE 138
              LGR   + L     +   +  VV+ G  A      +L   P V+ VV  +    + E
Sbjct: 77  CFTLGRTNAQRLAVEARRVLPEAHVVMGGPHATFFPGHMLAN-PAVDTVVLGEGEETIVE 135

Query: 139 LLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKR----GVTAFLTI------------ 182
           L+ R   G  + D         + + +                A+               
Sbjct: 136 LVARLDAGGDLKDIPGLALRSEDGIFLTPPRTRTTDLDGLAFPAYDAFNLAQYKSPEIPE 195

Query: 183 ------------QEGCDKFCTFCVV-PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLG 229
                         GC   C FC V  +  G    RS   V DE  +LI++         
Sbjct: 196 QYRSLTGTHLLSSRGCPFHCGFCSVNRFFEGRWARRSPGNVADEIERLIEDLHVRHLYFS 255

Query: 230 QNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMP 289
            ++       LD E+   +     ++     V +  T     D  + L+           
Sbjct: 256 DDLFT-----LDRERV-LALCKEIITRKLHFVWMAETRVDLVD--EELLGWM--YKAGCY 305

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
            ++  V+SGS R+LK+ N+  T  + R+           +      +VG PGE  +    
Sbjct: 306 RIYYGVESGSPRVLKAANKGFTVEQVRRAFALTHEAA--MEPCCFLMVGNPGENPETIGE 363

Query: 350 TMDLVDKIG 358
           T++L+ +I 
Sbjct: 364 TVELIREIR 372


>gi|120601403|ref|YP_965803.1| magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase
           [Desulfovibrio vulgaris DP4]
 gi|120561632|gb|ABM27376.1| Magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase
           [Desulfovibrio vulgaris DP4]
          Length = 485

 Score = 74.2 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 46/193 (23%), Positives = 75/193 (38%), Gaps = 14/193 (7%)

Query: 183 QEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG 242
             GC   CTFCV     G    R +  V+ E   L+            ++   R      
Sbjct: 212 SRGCVNRCTFCVAHKNIG-IRVRPIDSVIGEVDLLLREYDAGYIFFCDSLFTSR------ 264

Query: 243 EKCTFSDLLYSL-SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
            K    +L  +L     GL       +H   + +  ++A          ++  ++SG DR
Sbjct: 265 -KKRIIELSDALRHHFPGLRWG--CEAHVNTIDEDSVRAMAAGG--CVDMNFGIESGVDR 319

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
           +L ++N+R T  +    I  ++ V    AI   FI+G PGE  +D  AT+D    +    
Sbjct: 320 LLTAVNKRQTTAQIADAIRMVKRVSRINAIGL-FILGLPGERPEDSDATIDFACSLPLDM 378

Query: 362 AFSFKYSPRLGTP 374
           A     +P  G+P
Sbjct: 379 AQFSILTPYPGSP 391


>gi|32473823|ref|NP_866817.1| methyltransferase [Rhodopirellula baltica SH 1]
 gi|32444359|emb|CAD74357.1| putative methyltransferase [Rhodopirellula baltica SH 1]
          Length = 578

 Score = 74.2 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 52/288 (18%), Positives = 94/288 (32%), Gaps = 29/288 (10%)

Query: 99  GDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVED 158
               VV+ G     E +    R   V+VV   +     P  L   + G       Y   D
Sbjct: 103 RGCFVVIGGPWVTVEEDYFGDR---VDVVFIGEAEVTWPRFLREWQEGD--CGQRYEQTD 157

Query: 159 KFERLSIVDGGYNR---KRGVTAFLTIQEGCDKFCTFC-VVPYTRGIEISRSLSQVVDEA 214
           K E  ++    ++    K  +   L I  GC   C FC ++         +  SQV  E 
Sbjct: 158 KTEMTTVPTPRHDLLKNKHYLVGSLQISRGCPFQCEFCDIIVTFGRRPRIKQASQVTAEL 217

Query: 215 RKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMS 274
             L+  G+  + ++  N+         G K     +L  ++  +         S    + 
Sbjct: 218 DSLLTQGMHIVFIVDDNLI--------GNKKAIKPVLREVAAWQQRHGYPIVFSTEASLD 269

Query: 275 ----DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR----RHTAYEYRQIIDRIRSVR 326
               D L++   + ++    + + ++S  +  LK   +    R       + + RI+   
Sbjct: 270 LCEDDELMELMAEANI--QSVFIGLESPDEESLKETKKYQNVRSRGGTMLEKVHRIQDF- 326

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
             + +    IVGF  +T   F      +     A A          TP
Sbjct: 327 -GMEVWCGLIVGFDNDTSAIFETQQKFLKDSRIAHAMVGLLHAIPKTP 373


>gi|149196890|ref|ZP_01873943.1| Fe-S oxidoreductase family 2 [Lentisphaera araneosa HTCC2155]
 gi|149140000|gb|EDM28400.1| Fe-S oxidoreductase family 2 [Lentisphaera araneosa HTCC2155]
          Length = 529

 Score = 74.2 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 55/296 (18%), Positives = 98/296 (33%), Gaps = 22/296 (7%)

Query: 98  GGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG----------- 146
              + VV+ G     + E ILR+ P V+V+V  +    L E+ E   +G           
Sbjct: 67  NPQVKVVLGGPEFLGDNEAILRKYPWVDVIVRGEGEIPLKEIFEEKGYGYINGLCWIDEE 126

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
            R  D   +   K E +         +R          GC   C+FC       +     
Sbjct: 127 GRYRDNAKATLAKMEDIVPHYSDLFDERRPFVQYETSRGCPNRCSFC-TSSLDTVLRFIP 185

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
           L  V    +K+   G  E+ +L +  N    + L         L+    E    +R    
Sbjct: 186 LDDVRKHLQKIAKIGTTEVRILDRTFNIKSSRTLK--------LMQMFREEFPQLRFHCE 237

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
              P  ++D  +     +     ++   +Q+ S     ++ RR       + +  +  + 
Sbjct: 238 V-DPALVTDEFLHELKQMPKGQMHIETGLQTFSQDTYDTVQRRSPMDRTVKGLQILCDLE 296

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
            ++ I  D I G PG T +     +  +  +  A+          GTP     E V
Sbjct: 297 -NVEIHGDLIGGLPGATRESQLNDLLALIALEPAEIQLENLKLLPGTPMCEYKEIV 351


>gi|46581422|ref|YP_012230.1| radical SAM/B12 binding domain-containing protein [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|46450844|gb|AAS97490.1| radical SAM/B12 binding domain protein [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|311235079|gb|ADP87933.1| Radical SAM domain protein [Desulfovibrio vulgaris RCH1]
          Length = 485

 Score = 74.2 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 46/193 (23%), Positives = 75/193 (38%), Gaps = 14/193 (7%)

Query: 183 QEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG 242
             GC   CTFCV     G    R +  V+ E   L+            ++   R      
Sbjct: 212 SRGCVNRCTFCVAHKNIG-IRVRPIDSVIGEVDLLLREYDAGYIFFCDSLFTSR------ 264

Query: 243 EKCTFSDLLYSL-SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
            K    +L  +L     GL       +H   + +  ++A          ++  ++SG DR
Sbjct: 265 -KKRIIELSDALRHHFPGLRWG--CEAHVNTIDEDSVRAMAAGG--CVDMNFGIESGVDR 319

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
           +L ++N+R T  +    I  ++ V    AI   FI+G PGE  +D  AT+D    +    
Sbjct: 320 LLTAVNKRQTTAQIADAIRMVKRVSRINAIGL-FILGLPGERPEDSDATIDFACSLPLDM 378

Query: 362 AFSFKYSPRLGTP 374
           A     +P  G+P
Sbjct: 379 AQFSILTPYPGSP 391


>gi|194334605|ref|YP_002016465.1| radical SAM domain-containing protein [Prosthecochloris aestuarii
           DSM 271]
 gi|194312423|gb|ACF46818.1| Radical SAM domain protein [Prosthecochloris aestuarii DSM 271]
          Length = 468

 Score = 74.2 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 50/346 (14%), Positives = 108/346 (31%), Gaps = 42/346 (12%)

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             +   R  + +         V++ G       EE  +     + +V  +       LL+
Sbjct: 75  RTIEATRAYEIADAFRAKGKPVILGGLHISFNPEEAKQ---HADCIVVGEADNLWTTLLD 131

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQ----------EGCDKFCT 191
                +  +  +Y+ +D      I    Y R    +  + +            GC   C+
Sbjct: 132 DVANKR--LKPEYNSKDFPPVKEIAPLDYARIAKASKRVKVDGTKSIPIYLTRGCPFNCS 189

Query: 192 FCVVPYTRGI-EISRSLSQVVDEARKLIDNGVC--------EITLLGQNVNAWRGKGLDG 242
           FCV P   G    ++    +  +  +                  L  +N+          
Sbjct: 190 FCVTPNFTGKQYRTQKPELLKHQIEEAKKYFFNPKGKTSKPWFMLTDENLGI-------- 241

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
            K    + L  L E      + ++     +  +        +D    ++   ++S     
Sbjct: 242 NKKKLWESLDLLKECD----ITFSVFLSINFLEDPKTVRKLVDAGCNFVLAGLESIKQST 297

Query: 303 LKSMNRRH--TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
           L++ N+ H  +A +Y +IID  R     + I  +F+     +T +D    +  V K    
Sbjct: 298 LEAYNKGHVNSAEKYAKIIDDCRKA--GLNIQCNFLFNPALDTFEDIDELVQFVKKNNIF 355

Query: 361 QAFSFKYSPRLGTPGSNMLEQ--VDENVKAERLLCLQKKLREQQVS 404
                  +P  GT      ++  +  N   E+   L   ++ ++  
Sbjct: 356 MPIFQIITPYPGTQMYWDYKKEGLITNEDWEKYNALHLVIKSERYE 401


>gi|298483619|ref|ZP_07001794.1| oxygen-independent coproporphyrinogen III oxidase [Bacteroides sp.
           D22]
 gi|298270189|gb|EFI11775.1| oxygen-independent coproporphyrinogen III oxidase [Bacteroides sp.
           D22]
          Length = 376

 Score = 74.2 bits (181), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 53/233 (22%), Positives = 87/233 (37%), Gaps = 20/233 (8%)

Query: 186 CDKFCTFCVV-PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR---GKGLD 241
           C   C +C     TR    +R +  +        +  + +  L G+++       G    
Sbjct: 11  CKTRCIYCDFYSTTRSELKTRYVQALCR------ELTMRKEYLKGKDIETIYFGGGTPSQ 64

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPR--DMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
            EK  F  +  ++ E  GL   +  T      D+S   ++    L      L + +Q+  
Sbjct: 65  LEKEDFEQIFDTIREHYGLNHCQEITLEANPDDLSQEYLEMLSSLP--FNRLSMGIQTFD 122

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
           D  LK + RRH A    + IDR R       IS D I G PGET + +   +     +  
Sbjct: 123 DATLKLLRRRHNARTAIEAIDRCRKAGFQ-NISIDLIYGLPGETKERWENDLRQAISLNV 181

Query: 360 AQAFSFKYSPRLGTPGSNMLEQ-----VDENVKAERLLCLQKKLREQQVSFND 407
               ++       TP  NML+Q     VDE+   E    L + L++      +
Sbjct: 182 EHISAYHLIYEEDTPIYNMLKQHQISEVDEDSSLEFFTLLIEHLQKAGFEHYE 234


>gi|254563391|ref|YP_003070486.1| magnesium-protoporphyrin IX monomethyl ester cyclase
           [Methylobacterium extorquens DM4]
 gi|254270669|emb|CAX26673.1| Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase
           (Mg-protoporphyrin IX monomethyl ester oxidative
           cyclase) [Methylobacterium extorquens DM4]
          Length = 508

 Score = 74.2 bits (181), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 58/321 (18%), Positives = 102/321 (31%), Gaps = 40/321 (12%)

Query: 99  GDLLVVVAGCVAQAEGEEILRRSPIVNVVV---GPQTYYRLPELLERARFGKRVVDTDYS 155
             + +V  G      G EIL   P V  +V   G +T  +L   L   +    V    Y 
Sbjct: 94  PGVTIVYGGVFPTYHGLEILEAEPHVAAIVRGEGEETARQLMAALAAGQPLGAVPGLAYR 153

Query: 156 VEDKFERLSIVD-----------------GGYNRKRGVTAFL-TIQEGCDKFCTFCVVPY 197
             D     +                      YN   G+ A +     GC   CT+C    
Sbjct: 154 DGDAIRETAPAPLIRDLDAYRIGWELIDHARYNYWGGLRAVVVQFSRGCPHPCTYCGQRG 213

Query: 198 TRGIEISR-SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256
                  R  +    + AR   ++GV  I    +N           +K   + L   ++E
Sbjct: 214 FWTRWRHRDPVRFAAELARLHREHGVRVINFADENPTVS-------KKVWRTFLEALIAE 266

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
              L+ +  T +        ++  +           L ++S     L  + +  T    R
Sbjct: 267 NVDLILVGSTRADDIVRDADILPLYKRAG--WERFLLGLESTDTTTLDLIRKGATTTTDR 324

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
           + I  +R+    I   + ++VGF  E D D+   +  +      Q      +P   TP  
Sbjct: 325 EAIRLLRAN--GILSMATWVVGFEEERDRDYWRGLRQLLAYDPDQIQMLYVTPHRWTPYF 382

Query: 377 NMLEQVDENVKAERLLCLQKK 397
            + E         R++ L ++
Sbjct: 383 RLAE-------ERRVIQLDRR 396


>gi|61657339|emb|CAI44258.1| hypothetical protein [Thermotoga neapolitana]
          Length = 310

 Score = 74.2 bits (181), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 43/256 (16%), Positives = 83/256 (32%), Gaps = 25/256 (9%)

Query: 54  ERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAE 113
           E  N   D  ++  +      +  ++    L +                ++  G  A A+
Sbjct: 76  EIKNFPPDETVVAYSFMSFDLEVVKEEVVQLKK------------QGYTLIAGGPHASAD 123

Query: 114 GEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRK 173
            E  L      +V +G        E + R   G+R  +  +    K   L+        K
Sbjct: 124 PEGCLG-MGFDHVFIG-----DGEENILRFLMGER--ERIFDGISKRVNLNHYPPFLPSK 175

Query: 174 RGVTAFLTIQEGCDKFCTFCVVPYTRGI-EISRSLSQVVDEARKLIDNGVCEITLLGQN- 231
            G+   + I  GC   C +C  P   G     R +  ++  A+  ++        +  N 
Sbjct: 176 -GIYMPIEITRGCPFSCAYCQTPSLAGKQVRHRDVDVIIHYAKLGVEKNRKLARFIAPNS 234

Query: 232 VNAWRGKGLDGEKCTFSDLLYSLSE--IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMP 289
                  G+        +LLY L +  ++ +    + +    +     +       V   
Sbjct: 235 FGYGSRNGVTPNVEKIEELLYGLKKVGVEEIYFGTFPSEVRPESVTDEVLKVVKKYVKNR 294

Query: 290 YLHLPVQSGSDRILKS 305
            + +  QSGSDR+LK 
Sbjct: 295 SIVIGAQSGSDRVLKM 310


>gi|295107989|emb|CBL21942.1| Fe-S oxidoreductase [Ruminococcus obeum A2-162]
          Length = 550

 Score = 73.8 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 52/318 (16%), Positives = 104/318 (32%), Gaps = 35/318 (11%)

Query: 60  DDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILR 119
             AD++   +C+I           +  +R L     K   +      G     + E+ L 
Sbjct: 54  SGADVVCF-SCYIWN---------ISFVRELIRDLAKILPETAFWAGGPEVSYDAEKFLT 103

Query: 120 RSPIVNVVVGPQTYYRLPELLE---------------RARFGKRVVDTDYSVEDKFERLS 164
             P +  V+  +      +LLE                 R G+ +    +        + 
Sbjct: 104 EMPEMTGVLVGEGEKTFHDLLEYYIDGKGSLGEIRGIAYRDGEEIRHNGWRELMNLSEIP 163

Query: 165 IVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCE 224
            V            +     GC   C++C+          R L  V  E +  +D  V +
Sbjct: 164 FVYEHLEEFENRIIYYESSRGCPFSCSYCL-SSIDKKLRFRDLELVKKELQFFLDYKVPQ 222

Query: 225 ITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL 284
           +  + +  N          +   +   Y L    G+    +  S      + +      +
Sbjct: 223 VKFVDRTFNCKH-------EHAMAIWKYILEHDNGVTNFHFEVSADLLRDEEM-DLMAKM 274

Query: 285 DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETD 344
              +  L + VQS +   +++++R     + ++ +DR+ S R +I    D I G P E  
Sbjct: 275 RPGLIQLEIGVQSTNPETIRAIHRHMDLDKLKRCVDRVHSFR-NIHQHLDLIAGLPYEDY 333

Query: 345 DDFRATMDLVDKIGYAQA 362
           D F  + + V ++   Q 
Sbjct: 334 DTFHRSFNDVYQMKPDQL 351


>gi|220910133|ref|YP_002485444.1| response regulator receiver protein [Cyanothece sp. PCC 7425]
 gi|219866744|gb|ACL47083.1| response regulator receiver protein [Cyanothece sp. PCC 7425]
          Length = 675

 Score = 73.8 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 58/390 (14%), Positives = 112/390 (28%), Gaps = 72/390 (18%)

Query: 43  RMEDMFFSQGYERV----------NSMDDADL-------IVLNTCHIREKAAEKVYSFLG 85
            +     + G++ V          +  + A++       +VL  C        K  + L 
Sbjct: 28  YVGGALKTAGFQTVRFVDAMSNNIDDPELAEILRDYQPDVVL--CTAITPMIYKSQATLK 85

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            ++ +           + ++ G        E+L  +P ++ ++  +       LL     
Sbjct: 86  LVKEIC-------PQAIAIMGGVHPTYMYREVLGEAPWIDYIIRGEGEEITVNLLRAIAE 138

Query: 146 GK-----------------RVVDTDYSVEDKFERLSIVDGG--------YNRKRGVTAFL 180
           G+                 +VV T      K       D          Y       A  
Sbjct: 139 GRVESDRRNILGIAFLEEGKVVATPAHPPIKELNTLTPDWSLLDWDKYIYTPLNVRVAVP 198

Query: 181 TIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL 240
               GC   C FC          SRS    VDE  +L+ +      +L            
Sbjct: 199 NYSRGCPFRCRFCSQWKFWRKYRSRSPQHFVDEIERLVKDHNVGFFILADEEPTI----- 253

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMP----YLHLPVQ 296
              K  F  L   L     + R              +++   +L +       ++ L  +
Sbjct: 254 --NKPRFVALCQEL-----IDRNLGVHWGINTRVTDILRDEKELPLYRKAGLVHVSLGTE 306

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
           + +   L    +  T  + ++ +  +R     I     FI+G P ET +    T  +   
Sbjct: 307 AAAQLNLNLFRKETTIADNKRAVQLLRQN--GILAEVQFIMGLPTETPETIEETYRMARD 364

Query: 357 IGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
                     Y+P    P S + + + + V
Sbjct: 365 WQADMTNWNMYTPW---PFSELFQDLADKV 391


>gi|229579319|ref|YP_002837717.1| Radical SAM domain protein [Sulfolobus islandicus Y.G.57.14]
 gi|229581921|ref|YP_002840320.1| Radical SAM domain protein [Sulfolobus islandicus Y.N.15.51]
 gi|228010033|gb|ACP45795.1| Radical SAM domain protein [Sulfolobus islandicus Y.G.57.14]
 gi|228012637|gb|ACP48398.1| Radical SAM domain protein [Sulfolobus islandicus Y.N.15.51]
          Length = 506

 Score = 73.8 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 50/296 (16%), Positives = 101/296 (34%), Gaps = 18/296 (6%)

Query: 80  VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAE-GEEILRRSPIVNVVVGPQTYYRLPE 138
            Y     + N    +  +   + ++V G         E +     V+ +V  +    + +
Sbjct: 126 NYKSFQALINKPEIQEAKKRGMKILVGGPSTWQWLWREDMIEKVSVDTLVDGEGEKIIVK 185

Query: 139 LLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
           L +     + +    Y   D  +   I D    +   V   + I  GC + C FC V   
Sbjct: 186 LAQMILDNEPLPKYVYVSGD--DVPDIDDISEIKGASVNGMIEIMRGCARSCRFCSVTI- 242

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258
                   L ++  E +  +  GV    +   +V  +   G+         L   + +  
Sbjct: 243 -RPTRYYPLEKIEKELQTNVRAGVRHGVVHSDDVLFYGAVGIYPRPEPLIKLHTLVKKYY 301

Query: 259 G---LVRLRYTTSHPRDMSDCLI----KAHGDLDVLMPYLHLPVQSGSDRILKSMN---- 307
                           +    LI    +   D +     + + +++GS R+ K +     
Sbjct: 302 KTIAWSHASLAAIRYSEEKYGLISKLGEIIFDDEQRYLGVEVGIETGSVRLAKEIMPAKS 361

Query: 308 RRHTAYEYRQIIDRIRSVRPD--IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
             +   EY +I++    +  +  I  +   IVG P ET+DD   T++LVD +   +
Sbjct: 362 APYKPEEYPEIVEEAFKIMHENKIIPAGTMIVGLPEETEDDVYKTIELVDNLRPYR 417


>gi|227830506|ref|YP_002832286.1| radical SAM protein [Sulfolobus islandicus L.S.2.15]
 gi|284998001|ref|YP_003419768.1| hypothetical protein LD85_1736 [Sulfolobus islandicus L.D.8.5]
 gi|227456954|gb|ACP35641.1| Radical SAM domain protein [Sulfolobus islandicus L.S.2.15]
 gi|284445896|gb|ADB87398.1| conserved hypothetical protein [Sulfolobus islandicus L.D.8.5]
          Length = 506

 Score = 73.8 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 50/296 (16%), Positives = 101/296 (34%), Gaps = 18/296 (6%)

Query: 80  VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAE-GEEILRRSPIVNVVVGPQTYYRLPE 138
            Y     + N    +  +   + ++V G         E +     V+ +V  +    + +
Sbjct: 126 NYKSFQALINKPEIQEAKKRGMKILVGGPSTWQWLWREDMIEKVSVDTLVDGEGEKIIVK 185

Query: 139 LLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
           L +     + +    Y   D  +   I D    +   V   + I  GC + C FC V   
Sbjct: 186 LAQMILDNEPLPKYVYVSGD--DVPDIDDISEIKGASVNGMIEIMRGCARSCRFCSVTI- 242

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258
                   L ++  E +  +  GV    +   +V  +   G+         L   + +  
Sbjct: 243 -RPTRYYPLEKIEKELQTNVRAGVRHGVVHSDDVLFYGAVGIYPRPEPLIKLHTLVKKYY 301

Query: 259 G---LVRLRYTTSHPRDMSDCLI----KAHGDLDVLMPYLHLPVQSGSDRILKSMN---- 307
                           +    LI    +   D +     + + +++GS R+ K +     
Sbjct: 302 KTIAWSHASLAAIRYSEEKYGLISKLGEIIFDDEQRYLGVEVGIETGSVRLAKEIMPAKS 361

Query: 308 RRHTAYEYRQIIDRIRSVRPD--IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
             +   EY +I++    +  +  I  +   IVG P ET+DD   T++LVD +   +
Sbjct: 362 APYKPEEYPEIVEEAFKIMHENKIIPAGTMIVGLPEETEDDVYKTIELVDNLRPYR 417


>gi|189426412|ref|YP_001953589.1| radical SAM protein [Geobacter lovleyi SZ]
 gi|189422671|gb|ACD97069.1| Radical SAM domain protein [Geobacter lovleyi SZ]
          Length = 1288

 Score = 73.8 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 58/339 (17%), Positives = 114/339 (33%), Gaps = 55/339 (16%)

Query: 84   LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
            L   R L     + G    +VV G +     E  +R +     V+G +    L EL+ R 
Sbjct: 904  LEETRRLIRMLDEAGRTFPIVVGGQMVSPIPEFAVRITGADYGVIG-EGELILAELVTRL 962

Query: 144  RFGKRVVDTD---------------------------------YSVEDKFERLSIVDGGY 170
            R G  V D                                   + ++             
Sbjct: 963  RNGSDVSDLKGLVIREGEDIRNNGPGACIENLSTGLPPIPYDLFPIDQWLPIGEWYARHL 1022

Query: 171  NRKRGVTAFLTIQ----EGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEIT 226
             + +   A   I      GC   C FC   Y       R ++ +++EA++ +      + 
Sbjct: 1023 PQAQWHIADRVINVHGGRGCPFSCNFC---YHHSKPRYRDIAVMMEEAQEALQRFDANML 1079

Query: 227  LLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPR--DMSDCLIKAHGDL 284
                ++       +         L+ ++  +   +    +T       M D L++     
Sbjct: 1080 YFSDDL-------VLATPNRARQLVEAIHRLDRPISFSVSTRFDILARMDDSLLQELKQA 1132

Query: 285  DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETD 344
                  + L ++SGSDRILK + +  TA +    ++R+      I  ++  + G   ET 
Sbjct: 1133 G--CRTMGLGLESGSDRILKIIGKNCTAEQIEDGLERLHRT--GIYPTTSIMTGQQSETL 1188

Query: 345  DDFRATMDLV-DKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
            +D  A++ L+   +      +F ++     PGS + + +
Sbjct: 1189 EDAAASIALMQRAVRRDPFINFAFTLATPFPGSALHDLI 1227


>gi|323477713|gb|ADX82951.1| Radical SAM domain protein [Sulfolobus islandicus HVE10/4]
          Length = 541

 Score = 73.8 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 55/294 (18%), Positives = 104/294 (35%), Gaps = 26/294 (8%)

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
           K S++K   +  V+V G  +    +E        +V+   +    LP +++    G+ V 
Sbjct: 147 KISKLKSKYNFKVIVGGPGSWELTKE---NKDWADVIFIGEAEADLPRVVKSIIDGQEVP 203

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC-VVPYTRGIEISRSLSQ 209
              Y    K   +  +             + I  GC + C FC + P T     +  L  
Sbjct: 204 KVVYGKNPKVNEIPPIINPARLGE-----VQITRGCPRGCQFCPITPET---FRTIPLDV 255

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE--IKGLVRLRYTT 267
           V  E    +  G+  +  +  +V  +  + L       + L        + G+     + 
Sbjct: 256 VKKEVEVNMRAGIKRVEFITDDVLLYGSQKLRVNHEAITKLFTETMNMGVDGIWFPHISA 315

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLH----LPVQSGSDRILKSMNR----RHTAYEYRQII 319
              R  S   +KA  ++            + ++SGS++IL    R      T  E++ +I
Sbjct: 316 PAVRS-SPQTVKAMSEIARYDEDRAAAPVVGLESGSEKILSKYMRAKPFPWTPREWKDVI 374

Query: 320 DRIRSVRPD--IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
               ++  D  I       +G+P ET++D   ++DLV  I           P  
Sbjct: 375 LDATAIMNDNYIYPCYTMTIGYPEETNEDVDQSIDLVQSI-IDHKLKAWIFPLP 427


>gi|296242910|ref|YP_003650397.1| radical SAM domain-containing protein [Thermosphaera aggregans DSM
           11486]
 gi|296095494|gb|ADG91445.1| Radical SAM domain protein [Thermosphaera aggregans DSM 11486]
          Length = 535

 Score = 73.8 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 60/311 (19%), Positives = 111/311 (35%), Gaps = 41/311 (13%)

Query: 187 DKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC- 245
              C FC VP+  G   S++   V  E  +LI NG   I L   +   +  +   G +  
Sbjct: 228 PPGCGFCSVPFLFGPPRSKNPVVVKREVEELIANGARRIVLSAPDFLDYYRERKTGSRVI 287

Query: 246 -----------TFSDLLYSLSEIKGLVRLRYTTSHPRD----MSDCLIKAHGDLDVLMPY 290
                         +LL  L+ I+ + + R T S        +   +    G        
Sbjct: 288 TDPCNPPANIEAIEELLNQLASIREVEKGRVTISIENVKACLVDREVASLLGRYLKG-TT 346

Query: 291 LHLPVQSGS----DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDD 346
           +H+  ++G     +R+L          +  +++         +      + G P      
Sbjct: 347 IHIGCETGDGEFNNRVLGKPISPGDVVKASKLLSE-----NGLRPYVYLMYGLPYMDSST 401

Query: 347 FRATMDLVDKI---GYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQV 403
           +  T+ LVD++      +   +KY P   T    M +++      E  L ++K++ E   
Sbjct: 402 YLKTLSLVDELAGANVEKITLYKYIPLPQT-SFKM-KKLPLGFDKEITLLMKKRIDEYNY 459

Query: 404 SFNDACVGQIIEV-LIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDII-----KVRITD 457
                  G I+EV L+E      G  V   P    V + ++    G  +     +V+IT+
Sbjct: 460 MVKKNLRGSILEVFLLETKRGVYGYPVKHGP---VVFVEAEPQFSGK-VNGCRGRVKITE 515

Query: 458 VKISTLYGELV 468
           V    + G L+
Sbjct: 516 VAPRFVKGVLL 526


>gi|289582420|ref|YP_003480886.1| radical SAM protein [Natrialba magadii ATCC 43099]
 gi|289531973|gb|ADD06324.1| Radical SAM domain protein [Natrialba magadii ATCC 43099]
          Length = 595

 Score = 73.8 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 62/387 (16%), Positives = 122/387 (31%), Gaps = 52/387 (13%)

Query: 125 NVVVGPQTYYRLPELLERARFG--KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTI 182
           + V        + +L+E    G   R+ D D       +   +V+   N    + A L  
Sbjct: 153 DFVAKGDVEAAVHDLVESGLEGFNNRMRDVDEVSRWAQQGAFVVEQHPNHPDYLIAELET 212

Query: 183 QEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQ-NVNAWRGKGLD 241
             GC   C+FC  P   G    R    VV E   L D GV    +  Q ++ A+ G G  
Sbjct: 213 SRGCAYRCSFCTEP-LYGNPTFRPPPTVVGEVDALADYGVKHYRIGRQADILAYGGDGEA 271

Query: 242 GEKCTFSDLLYSLSEIKGLVR-------LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP 294
                   L   + E+   +           T     + S   I+   + +         
Sbjct: 272 PNPDALRQLYGGIREVAPDLETLHLDNMNPITIVEWPEKSREGIRIIAEHNTPGDTAAFG 331

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSV------------------------RPDIA 330
           ++S    + +  N   TA E  + +  +                            P + 
Sbjct: 332 LESADPLVQEENNLNVTAEECFEAVRIVNEEAGWRPGGPDDPTAGSSQSDSNVRQLPKLL 391

Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYA------QAFSFKYSPRLGTPGSNMLEQVDE 384
              + + G  GE ++ ++   + + ++ Y       +    +     GT   +M +    
Sbjct: 392 PGINLLHGLKGEREETYQHNREFLQRV-YDEGYMLRRINIRQVMSFDGT---DMSD-TGA 446

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIE---VL--IEKHGKEKGKLVGR-SPWLQSV 438
            +  E     ++  R+ +   ++  + ++     VL  +     + GK  GR       +
Sbjct: 447 EIANEHKKLFKRYKRQVREEIDNPMLERVAPPGTVLSDVHLEYHQDGKTFGRQLGTYPLL 506

Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYG 465
           V       +G  I V + D    ++ G
Sbjct: 507 VGIPGERELGRTIDVAVVDHGYRSVTG 533


>gi|323474982|gb|ADX85588.1| Radical SAM domain protein [Sulfolobus islandicus REY15A]
          Length = 541

 Score = 73.8 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 55/294 (18%), Positives = 104/294 (35%), Gaps = 26/294 (8%)

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
           K S++K   +  V+V G  +    +E        +V+   +    LP +++    G+ V 
Sbjct: 147 KISKLKSKYNFKVIVGGPGSWELTKE---NKDWADVIFIGEAEADLPRVVKSIIDGQEVP 203

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC-VVPYTRGIEISRSLSQ 209
              Y    K   +  +             + I  GC + C FC + P T     +  L  
Sbjct: 204 KVVYGKNPKVNEIPPIINPARLGE-----VQITRGCPRGCQFCPITPET---FRTIPLDV 255

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE--IKGLVRLRYTT 267
           V  E    +  G+  +  +  +V  +  + L       + L        + G+     + 
Sbjct: 256 VKKEVEVNMRAGIKRVEFITDDVLLYGSQKLRVNHEAITKLFTETMNMGVDGIWFPHISA 315

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLH----LPVQSGSDRILKSMNR----RHTAYEYRQII 319
              R  S   +KA  ++            + ++SGS++IL    R      T  E++ +I
Sbjct: 316 PAVRS-SPQTVKAMSEIARYDEDRAAAPVVGLESGSEKILSKYMRAKPFPWTPREWKDVI 374

Query: 320 DRIRSVRPD--IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
               ++  D  I       +G+P ET++D   ++DLV  I           P  
Sbjct: 375 LDATAIMNDNYIYPCYTMTIGYPEETNEDVDQSIDLVQSI-IDHKLKAWIFPLP 427


>gi|255525257|ref|ZP_05392198.1| Radical SAM domain protein [Clostridium carboxidivorans P7]
 gi|296187766|ref|ZP_06856160.1| radical SAM domain protein [Clostridium carboxidivorans P7]
 gi|255511022|gb|EET87321.1| Radical SAM domain protein [Clostridium carboxidivorans P7]
 gi|296047723|gb|EFG87163.1| radical SAM domain protein [Clostridium carboxidivorans P7]
          Length = 448

 Score = 73.8 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 60/338 (17%), Positives = 114/338 (33%), Gaps = 47/338 (13%)

Query: 47  MFFSQGYERVNSMDDADLI-VLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVV 105
           +  ++  E+++  +  DL+ +  T  +  +A E    F  R   +    I    D    V
Sbjct: 43  IIENENVEKIDFDEPVDLVAITVTVDVMNRAVEISKEFQSRNVTVIAGGIHITADPESAV 102

Query: 106 AGC------VAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDK 159
                    +A+    +IL                +          G+ +V  DYS  D 
Sbjct: 103 NSFDAISVGMAERVWVKILED--------KKNNSLKKIYYDMENIAGEEIVSPDYSSIDN 154

Query: 160 FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC--VVPYTRGIEISRSLSQVVDEARKL 217
            + L             T  ++   GC   C FC           I+R +  V+ +   L
Sbjct: 155 KKYL------------YTNIISTSRGCPFECDFCYNSCKSVLKTYINRPIDDVIKDINAL 202

Query: 218 IDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCL 277
             N    I  +  N          G       LL  +  +K L      TS+  DM   L
Sbjct: 203 KTN---HIMFIDDNFI--------GNPKWTKKLLKEIKPLK-LKWNAAVTSNIVDMP-EL 249

Query: 278 IKAHGDLDVLMPYLHLPVQSGSDRILKSMNR-RHTAYEYRQIIDRIRSVRPDIAISSDFI 336
           +            L +  +S + + + S+++ +++   Y ++++ I      I I++ F+
Sbjct: 250 LDEMKAAG--CQSLFIGFESINSKSIDSVHKVQNSVKRYEKLVEEIHER--GIMINASFV 305

Query: 337 VGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
            G   +    F+ T++ + K       S   +P  GT 
Sbjct: 306 FGLDEDDVSVFKNTLEWIVKNKIETVTSHILTPYPGTK 343


>gi|15897403|ref|NP_342008.1| hypothetical protein SSO0477 [Sulfolobus solfataricus P2]
 gi|13813632|gb|AAK40798.1| Conserved hypothetical protein [Sulfolobus solfataricus P2]
          Length = 541

 Score = 73.8 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 56/294 (19%), Positives = 104/294 (35%), Gaps = 26/294 (8%)

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
           K S++K   +  V+V G  +    +E        +V+   +    LP +++    G+ V 
Sbjct: 147 KISKLKSKYNFKVIVGGPGSWELTKE---NKDWADVIFIGEAEADLPRVVKSIIDGQEVP 203

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC-VVPYTRGIEISRSLSQ 209
              Y    K   +  +             + I  GC + C FC + P T     +  L  
Sbjct: 204 KVVYGKNPKVNEIPPIINPARLGE-----VQITRGCPRGCQFCPITPET---FRTIPLDV 255

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE--IKGLVRLRYTT 267
           V  E    +  GV  +  +  +V  +  + L       + L        + G+     + 
Sbjct: 256 VKKEVEVNMRAGVKRVEFITDDVLLYGSQKLRVNHEAITKLFTETMNMGVDGIWFPHISA 315

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLH----LPVQSGSDRILKSMNR----RHTAYEYRQII 319
              R  S   +KA  ++            + ++SGS++IL    R      T  E++ +I
Sbjct: 316 PAVRS-SPQTVKAMSEIARYDEDRAAAPVVGLESGSEKILSKYMRAKPFPWTPREWKDVI 374

Query: 320 DRIRSVRPD--IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
               ++  D  I       +G+P ET++D   ++DLV  I           P  
Sbjct: 375 LDATAIMNDNYIYPCYTMTIGYPEETNEDVDQSIDLVQSI-IDHKLKAWIFPLP 427


>gi|229579500|ref|YP_002837898.1| Radical SAM domain protein [Sulfolobus islandicus Y.G.57.14]
 gi|228010214|gb|ACP45976.1| Radical SAM domain protein [Sulfolobus islandicus Y.G.57.14]
          Length = 541

 Score = 73.8 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 56/294 (19%), Positives = 104/294 (35%), Gaps = 26/294 (8%)

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
           K S++K   +  V+V G  +    +E        +V+   +    LP +++    G+ V 
Sbjct: 147 KISKLKSKYNFKVIVGGPGSWELTKE---NKDWADVIFIGEAEADLPRVVKSIIDGQEVP 203

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC-VVPYTRGIEISRSLSQ 209
              Y    K   +  +             + I  GC + C FC + P T     +  L  
Sbjct: 204 KVVYGKNPKVNEIPPIINPARLGE-----VQITRGCPRGCQFCPITPET---FRTIPLDV 255

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE--IKGLVRLRYTT 267
           V  E    +  GV  +  +  +V  +  + L       + L        + G+     + 
Sbjct: 256 VKKEVEVNMRAGVKRVEFITDDVLLYGSQKLRVNHEAITKLFTETMNMGVDGIWFPHISA 315

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLH----LPVQSGSDRILKSMNR----RHTAYEYRQII 319
              R  S   +KA  ++            + ++SGS++IL    R      T  E++ +I
Sbjct: 316 PAVRS-SPQTVKAMSEIARYDEDRAAAPVVGLESGSEKILSKYMRAKPFPWTPREWKDVI 374

Query: 320 DRIRSVRPD--IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
               ++  D  I       +G+P ET++D   ++DLV  I           P  
Sbjct: 375 LDATAIMNDNYIYPCYTMTIGYPEETNEDVDQSIDLVQSI-IDHKLKAWIFPLP 427


>gi|229581812|ref|YP_002840211.1| Radical SAM domain protein [Sulfolobus islandicus Y.N.15.51]
 gi|228012528|gb|ACP48289.1| Radical SAM domain protein [Sulfolobus islandicus Y.N.15.51]
          Length = 541

 Score = 73.8 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 56/294 (19%), Positives = 104/294 (35%), Gaps = 26/294 (8%)

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
           K S++K   +  V+V G  +    +E        +V+   +    LP +++    G+ V 
Sbjct: 147 KISKLKSKYNFKVIVGGPGSWELTKE---NKDWADVIFIGEAEADLPRVVKSIIDGQEVP 203

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC-VVPYTRGIEISRSLSQ 209
              Y    K   +  +             + I  GC + C FC + P T     +  L  
Sbjct: 204 KVVYGKNPKVNEIPPIINPARLGE-----VQITRGCPRGCQFCPITPET---FRTIPLDV 255

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE--IKGLVRLRYTT 267
           V  E    +  GV  +  +  +V  +  + L       + L        + G+     + 
Sbjct: 256 VKKEVEVNMRAGVKRVEFITDDVLLYGSQKLRVNHEAITKLFTETMNMGVDGIWFPHISA 315

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLH----LPVQSGSDRILKSMNR----RHTAYEYRQII 319
              R  S   +KA  ++            + ++SGS++IL    R      T  E++ +I
Sbjct: 316 PAVRS-SPQTVKAMSEIARYDEDRAAAPVVGLESGSEKILSKYMRAKPFPWTPREWKDVI 374

Query: 320 DRIRSVRPD--IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
               ++  D  I       +G+P ET++D   ++DLV  I           P  
Sbjct: 375 LDATAIMNDNYIYPCYTMTIGYPEETNEDVDQSIDLVQSI-IDHKLKAWIFPLP 427


>gi|148265629|ref|YP_001232335.1| radical SAM domain-containing protein [Geobacter uraniireducens
           Rf4]
 gi|146399129|gb|ABQ27762.1| Radical SAM domain protein [Geobacter uraniireducens Rf4]
          Length = 459

 Score = 73.8 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 40/209 (19%), Positives = 76/209 (36%), Gaps = 16/209 (7%)

Query: 172 RKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDN-GVCEITLLG 229
            + G  A L  + GC   C +C  P   G     R + ++V E R L+D  GV  I  + 
Sbjct: 180 HREGGMANLQTKRGCPFTCIYCTYPILEGNSIRLRPIGEIVAEIRSLVDGFGVSYIYFVD 239

Query: 230 QNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMP 289
              N          +         ++E   +    +   +P  ++  L+ A   +     
Sbjct: 240 DIFNYP-------PEFAEELCRAIIAEQLPINWTAF--INPAFVTPSLLNAM--IAAGCD 288

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
            +    +SGS ++L+++ +     + R      R    D A     + G PGE++     
Sbjct: 289 AVEFGSESGSAQMLRNLGKSFGVEDVRSASRLCREQGADFA--HYILFGGPGESEATIDE 346

Query: 350 TMDLVDKIGYAQAFSFKYSP-RLGTPGSN 377
           +  L+D++      +        GTP  +
Sbjct: 347 SFSLMDELEPTAVIAMTGIRIFPGTPLHD 375


>gi|124516698|gb|EAY58206.1| putative radical SAM family protein [Leptospirillum rubarum]
          Length = 530

 Score = 73.8 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 57/297 (19%), Positives = 99/297 (33%), Gaps = 26/297 (8%)

Query: 79  KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPI-VNVVVGPQTYYRLP 137
           K  +   +   L    I+      V+V G       ++I++  P  V  VVG      + 
Sbjct: 136 KYKNEFNKKLRLIKEGIRLAPKARVMVGGGAFSVFADQIIKLLPEGVIGVVGEGEDAIVK 195

Query: 138 ELLERARFGKRVV---------------DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTI 182
            +  +     RV+                   S       L  V  G+         +  
Sbjct: 196 IVEGKPVDDDRVIYRKNGKTIRGKKEGGVAIRSAPYDLRYLESVFEGHEFYHRTMVGIQT 255

Query: 183 QEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGL 240
           + GC   C+FC+  Y  G  +  R    +V+E R+  D  G+           A    G+
Sbjct: 256 KRGCPYGCSFCLYTYIEGKRVYYRDPEDIVNEMRQYYDRWGIRNFWFAD----AQFIPGV 311

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300
                   DLL +L +  G+            +S  + K   +    M  L + V SGS 
Sbjct: 312 KAIPEAM-DLLKALRD-SGMKISWSGYIRTSLISPEMAKLMVESG--MGDLEVSVTSGSQ 367

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
            IL S+       +  +    +R       I  ++ +  PGET++  R ++   + I
Sbjct: 368 EILDSLRMGFRLDQLVEGCRNLRDAGYKGNIILNYSLNAPGETEETLRESIRSYESI 424


>gi|148263366|ref|YP_001230072.1| radical SAM domain-containing protein [Geobacter uraniireducens
           Rf4]
 gi|146396866|gb|ABQ25499.1| Radical SAM domain protein [Geobacter uraniireducens Rf4]
          Length = 600

 Score = 73.8 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 56/347 (16%), Positives = 113/347 (32%), Gaps = 44/347 (12%)

Query: 59  MDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEIL 118
            ++AD+++  +C+I           + +   L     +      VV+ G        ++L
Sbjct: 82  AEEADVLLF-SCYIWN---------VEQTLKLVADLKQIRPGTFVVLGGPEVSYGVFDLL 131

Query: 119 RRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVE----------------DKFER 162
            R+P V+ V+  +      +LLE  R          S+                 D    
Sbjct: 132 DRNPAVDCVIKGEGETGCRQLLEALRLNHSTTQQLGSIPGITFRADEEIIASPGRDSIAD 191

Query: 163 LSIVDGGYNRK----RGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLI 218
           L  +   +            +     GC   C FC+    +G   S S+ ++  + + L+
Sbjct: 192 LDTIPSPFAASLVDLGKPLVYYETSRGCPFSCAFCMSSLEKG-VRSFSMPRIKSDLKLLM 250

Query: 219 DNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLI 278
           D GV  + L+ +  N         E   F      +       R  +  +    ++D  +
Sbjct: 251 DAGVQTVKLVDRTFN--YDAPRADEIWDF------IGRNNRQSRFHFEIAADL-LTDDNL 301

Query: 279 KAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVG 338
                +        + VQSG    L  + R+    +    ++++     ++ I  D + G
Sbjct: 302 AMLATVPPDTFRFEIGVQSGGTETLARVGRKSNLEKLFGNVEKL-CRDTNVTIHLDLVAG 360

Query: 339 FPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            P E  D F  ++  +  +        +  P     GS M    D+ 
Sbjct: 361 LPYEDFDGFLDSLQRLIDV---SPHHIQVEPLKVLKGSAMRRIADDE 404


>gi|218779840|ref|YP_002431158.1| radical SAM domain protein [Desulfatibacillum alkenivorans AK-01]
 gi|218761224|gb|ACL03690.1| Radical SAM domain protein [Desulfatibacillum alkenivorans AK-01]
          Length = 506

 Score = 73.8 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 54/343 (15%), Positives = 108/343 (31%), Gaps = 31/343 (9%)

Query: 57  NSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEE 116
             ++ AD + ++   I++ + E+V +  G                 V+  G  A +  +E
Sbjct: 66  KDLEWADAVFVSAMIIQKDSFEEVVALAGAAGK------------PVIAGGPYAGSSHKE 113

Query: 117 ILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGV 176
           I      V+  V  +        LE  + GK             ++         +    
Sbjct: 114 IT----GVDHFVLGEVENSFQGFLEDFQAGKAKRLYPPPERPSLDQTPAPRFDLLKMDSY 169

Query: 177 TAF-LTIQEGCDKFCTFCVVPYTRG-IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA 234
            +  +    GC   C FC +    G     +    ++ E + L D G      +  +   
Sbjct: 170 ASMSVQYSRGCPFNCEFCDIWKVYGNKPRLKPAESMIRELQTLHDQGWRGPVFVVDD--N 227

Query: 235 WRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP 294
           + G     +      +     + K   R     S      D L++           + + 
Sbjct: 228 FIGNKRRVKTELLPAMFRWQKDHKYPFRFFTEASINLAADDALLQGMAAAG--FNEVFIG 285

Query: 295 VQSGSDRILKSMNRRHTAYE-YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
           +++ S   L    +         Q + +I+     I + + FI+GF  +T+D        
Sbjct: 286 IETPSAEALAETGKTQNLKCDMAQAVMKIQEY--GIEVMAGFILGFDSDTEDIVERQAAF 343

Query: 354 VDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQK 396
           + + G  QA     +   GT   + LE      +  RLL +  
Sbjct: 344 IQQTGIPQAMVGILTALPGTELHSRLE------REGRLLRVSD 380


>gi|332706649|ref|ZP_08426710.1| Fe-S oxidoreductase [Lyngbya majuscula 3L]
 gi|332354533|gb|EGJ34012.1| Fe-S oxidoreductase [Lyngbya majuscula 3L]
          Length = 527

 Score = 73.8 bits (180), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 47/302 (15%), Positives = 106/302 (35%), Gaps = 30/302 (9%)

Query: 79  KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSP---IVNV--------- 126
           +++  LG I+       +   D  ++V G       E++  + P   IV+V         
Sbjct: 118 ELWGNLGLIKQGLKRAKRYNPDARLIVGGGAVSVFYEQLENKLPTGTIVSVGEGETLLTK 177

Query: 127 -VVGPQTYYRLPELLERARFGKRVVDTDYSVEDKF-------ERLSIVDGGYNRKRGVTA 178
            ++G     +   ++  A+   R++    +  +K        + +      Y ++     
Sbjct: 178 ILLGQNFDDQRCYVVGEAKPRDRMIHESPTPIEKIACNYDYIQSIWPSFDYYFQQNDFYI 237

Query: 179 FLTIQEGCDKFCTFCVVPYTRGIEISR-SLSQVVDEARKLIDNGVCEITLL-GQNVNAWR 236
            +  + GC   C +C+     G ++      +VV E R+L D G+ +      Q + A +
Sbjct: 238 GVQTKRGCPHNCCYCIYTVVEGKQVRINPADEVVAEMRQLYDRGIRKFWFTDAQFIPAKK 297

Query: 237 GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQ 296
             G         +LL  + +               +++  L          M Y  + + 
Sbjct: 298 FIG------DAVELLQKILDAGMSDINWAAYIRADNLTPELCDLMVKTG--MNYFEIGIT 349

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
           SGS  +++ M   +      Q    +++   +  +S ++      ET D  R T+    +
Sbjct: 350 SGSQELVRKMRMGYNLRTVLQNCRDLKAAGFNDLVSVNYSFNVIDETFDTIRQTIAYHRE 409

Query: 357 IG 358
           + 
Sbjct: 410 LE 411


>gi|238620121|ref|YP_002914947.1| Radical SAM domain protein [Sulfolobus islandicus M.16.4]
 gi|238381191|gb|ACR42279.1| Radical SAM domain protein [Sulfolobus islandicus M.16.4]
          Length = 541

 Score = 73.8 bits (180), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 49/302 (16%), Positives = 96/302 (31%), Gaps = 42/302 (13%)

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
           K  ++K   +  V+V G  +    +E        +V+   +    LP +++    G+ V 
Sbjct: 147 KIWKLKSKYNFKVIVGGPGSWELTKE---NKDWADVIFIGEAEADLPRVVKSIIDGQEVP 203

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC-VVPYTRGIEISRSLSQ 209
              Y    K   +  +             + I  GC + C FC + P T     +  L  
Sbjct: 204 KVVYGKNPKVNEIPPIINPARLGE-----VQITRGCPRGCQFCPITPET---FRTIPLDV 255

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSH 269
           V  E    +  G+  +  +  +V    G               +++++            
Sbjct: 256 VKKEVEVNMRAGIKRVEFITDDV-LLYGS------QKLRVNHEAITKL--FTETMNMGVD 306

Query: 270 PRDMSDCLIKAHGDLDVLMPYLH--------------LPVQSGSDRILKSMNR----RHT 311
                     A       +  +               + ++SGS++IL    R      T
Sbjct: 307 GIWFPHISAPAVRSSPQTVKTMSEIARYDEDRAAAPVVGLESGSEKILSKYMRAKPFPWT 366

Query: 312 AYEYRQIIDRIRSVRPD--IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369
             E++ +I    ++  D  I       +G+P ET++D   ++DLV  I           P
Sbjct: 367 PREWKDVILDATAIMNDNYIYPCYTMTIGYPEETNEDVDQSIDLVQSI-IDHKLKAWIFP 425

Query: 370 RL 371
             
Sbjct: 426 LP 427


>gi|193216005|ref|YP_001997204.1| radical SAM domain-containing protein [Chloroherpeton thalassium
           ATCC 35110]
 gi|193089482|gb|ACF14757.1| Radical SAM domain protein [Chloroherpeton thalassium ATCC 35110]
          Length = 466

 Score = 73.8 bits (180), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 33/195 (16%), Positives = 72/195 (36%), Gaps = 13/195 (6%)

Query: 185 GCDKFCTFCVVPYTRGI-EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
           GC   C+FC  P   G     R +  V++E +   +    E         ++    +  +
Sbjct: 203 GCPVGCSFCTTPTIYGKNFRMREVDYVIEEIKYHQNRLGKEKV-----SFSFMDDNICFK 257

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
              F++L+ +++ + G+      + +  +       A            +  +S     +
Sbjct: 258 PNFFNELMDAMTGM-GVTWNANISMNFLERPGVPELASASG---CDMFSIGFESLDPDTI 313

Query: 304 KSMNRRHT-AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           K +++       Y ++I  ++  +  IAI   F+ GF  +    F+AT D + +      
Sbjct: 314 KQVHKGSNFHAHYEEVIKNVQKQK--IAIQGYFMFGFDTDKPASFQATYDFIMQNKIEFP 371

Query: 363 FSFKYSPRLGTPGSN 377
                +P  GTP  +
Sbjct: 372 VFAITTPFPGTPWYD 386


>gi|227827895|ref|YP_002829675.1| radical SAM protein [Sulfolobus islandicus M.14.25]
 gi|229585162|ref|YP_002843664.1| Radical SAM domain protein [Sulfolobus islandicus M.16.27]
 gi|227459691|gb|ACP38377.1| Radical SAM domain protein [Sulfolobus islandicus M.14.25]
 gi|228020212|gb|ACP55619.1| Radical SAM domain protein [Sulfolobus islandicus M.16.27]
          Length = 541

 Score = 73.8 bits (180), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 49/302 (16%), Positives = 96/302 (31%), Gaps = 42/302 (13%)

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
           K  ++K   +  V+V G  +    +E        +V+   +    LP +++    G+ V 
Sbjct: 147 KIWKLKSKYNFKVIVGGPGSWELTKE---NKDWADVIFIGEAEADLPRVVKSIIDGQEVP 203

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC-VVPYTRGIEISRSLSQ 209
              Y    K   +  +             + I  GC + C FC + P T     +  L  
Sbjct: 204 KVVYGKNPKVNEIPPIINPARLGE-----VQITRGCPRGCQFCPITPET---FRTIPLDV 255

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSH 269
           V  E    +  G+  +  +  +V    G               +++++            
Sbjct: 256 VKKEVEVNMRAGIKRVEFITDDV-LLYGS------QKLRVNHEAITKL--FTETMNMGVD 306

Query: 270 PRDMSDCLIKAHGDLDVLMPYLH--------------LPVQSGSDRILKSMNR----RHT 311
                     A       +  +               + ++SGS++IL    R      T
Sbjct: 307 GIWFPHISAPAVRSSPQTVKTMSEIARYDEDRAAAPVVGLESGSEKILSKYMRAKPFPWT 366

Query: 312 AYEYRQIIDRIRSVRPD--IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369
             E++ +I    ++  D  I       +G+P ET++D   ++DLV  I           P
Sbjct: 367 PREWKDVILDATAIMNDNYIYPCYTMTIGYPEETNEDVDQSIDLVQSI-IDHKLKAWIFP 425

Query: 370 RL 371
             
Sbjct: 426 LP 427


>gi|291565917|dbj|BAI88189.1| radical SAM domain protein [Arthrospira platensis NIES-39]
          Length = 529

 Score = 73.8 bits (180), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 61/360 (16%), Positives = 122/360 (33%), Gaps = 41/360 (11%)

Query: 58  SMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEI 117
             + ADL++L    +      +    L +IR  K           V V G  A +   E+
Sbjct: 62  EWEWADLVILTAMIV------QKVDLLAQIREAKRRGKP------VAVGGPYATSVPGEV 109

Query: 118 LRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGV- 176
                  + ++  +    LPE +     G+         +       +            
Sbjct: 110 AA---EADYLILDEGEITLPEFVAAINRGETSGTFRSPDKADVNTTPVPRYDLLELDAYD 166

Query: 177 TAFLTIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW 235
           +  +    GC   C FC +    G +  +++  Q++ E   L + G      +  +    
Sbjct: 167 SMSVQFSRGCPFQCEFCDIIVLYGRKPRTKNPEQLLKELDYLYELGWRRGVFMVDD---- 222

Query: 236 RGKGLDGEKCTFSDLLYSLS--EIKGLVRLRYTTSHPRDM--SDCLIKAHGDLDVLMPYL 291
                 G K     LL +L   +I+     R+ T    D+   + L+    D +     +
Sbjct: 223 ---NFIGNKRNVKLLLKALKTWQIEHQYPFRFNTEASVDLAADEELMDMMVDCN--FDAV 277

Query: 292 HLPVQSGSDRILKSMNR-RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
            L +++  +  L    + ++T     + +D+I  +R  +   + FI+GF GE        
Sbjct: 278 FLGIETPDEASLALTKKYQNTRSSLSESVDKI--IRAGLRPMAGFIIGFDGEKSGAASRV 335

Query: 351 MDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACV 410
           ++ VD+ G   A          T   + L+      K  RLL  ++ + +     N   +
Sbjct: 336 IEFVDQAGIPTAMLGMLQALPNTGLWHRLD------KEGRLLADRENISQHAT--NQTML 387


>gi|218778983|ref|YP_002430301.1| radical SAM domain protein [Desulfatibacillum alkenivorans AK-01]
 gi|218760367|gb|ACL02833.1| Radical SAM domain protein [Desulfatibacillum alkenivorans AK-01]
          Length = 500

 Score = 73.8 bits (180), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 54/330 (16%), Positives = 104/330 (31%), Gaps = 52/330 (15%)

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R+  +      +  ++ ++V G +A A G  IL  S  ++ ++  +      + L+   
Sbjct: 91  RRLEKIAARFKADFPEIPIIVGGPLASASGARIL-ESGNIDYILRGEGEVGFIDFLDAKE 149

Query: 145 FGKR--------------------------VVDTDYSVEDKFERLSIVDGGYNRKRGVT- 177
            G R                          V D D      ++ + + D           
Sbjct: 150 QGDRFPERPISGLAFRNENQTLVENPMNLHVPDMDEIPIPAWDLIDLSDYQSLSHFTPID 209

Query: 178 -----AFLTIQEGCDKFCTFC---VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLG 229
                A L    GC   C +C        R +   R + ++    +K     V    ++ 
Sbjct: 210 SSSRYAVLFTSRGCPYGCIYCHRIFSKKFRPMNAYRVVDEMECLVKKYQ---VETFEIVD 266

Query: 230 QNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM-SDCLIKAHGDLDVLM 288
              N   G+          +    + +    VR+ +      D+    LI+    + V  
Sbjct: 267 DIFNLDYGRA--------MEFCREIKKRGLKVRISFPNGVRGDLLDPDLIRELASVGVY- 317

Query: 289 PYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFR 348
             +   V++ S R+ K + +     + R+ I         I     F++GFP ET  +  
Sbjct: 318 -EMAFAVETASPRVQKLIRKNIKLDKIRENIAIAAEA--GIFTWGFFMLGFPSETRKELM 374

Query: 349 ATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
            T+          A+ F   P  GT  + M
Sbjct: 375 QTIKFACTSRLHGAYFFTVVPFEGTDLAAM 404


>gi|325852044|ref|ZP_08171127.1| putative coproporphyrinogen dehydrogenase [Prevotella denticola
           CRIS 18C-A]
 gi|325484600|gb|EGC87516.1| putative coproporphyrinogen dehydrogenase [Prevotella denticola
           CRIS 18C-A]
          Length = 427

 Score = 73.8 bits (180), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 54/266 (20%), Positives = 93/266 (34%), Gaps = 52/266 (19%)

Query: 186 CDKFCTFC----VVPYTR-GIEIS---RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG 237
           C   C +C     VP    G   S   R +  +  E     D          + + +   
Sbjct: 11  CASRCIYCGFYSTVPSGGEGKGKSVEERYVDAMCHEMELRTDEEAASGGETAE-LTSIYL 69

Query: 238 KGLDGEKCTFSDLLYSLSEIKGLVRLRY--------------------TTSHPRDMSDCL 277
            G    + +F  L      I+ +  L +                       +P D++   
Sbjct: 70  GGGTPSQLSFQSLHRLFHTIETVYHLPFRRDMGTDRKQGCAIAPIEVTMECNPDDVTAEF 129

Query: 278 IKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIV 337
            +    L   +  + + +Q+ SD  L+ ++RRHTA E    + R+R       IS D + 
Sbjct: 130 ARRLRSLP--VNRISMGMQTFSDERLRFLHRRHTAAEAVSAVGRLREAGIG-NISVDLMF 186

Query: 338 GFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQK- 396
           GFPGET +++ A +  V ++G     ++      GTP   +               LQ  
Sbjct: 187 GFPGETLEEWEADIAHVLELGAEHISAYSLMYEEGTPLYRL---------------LQAG 231

Query: 397 KLREQQVSFNDACVGQIIEVLIEKHG 422
           K+RE              +VLI++ G
Sbjct: 232 KVREMDDELYRKM----YDVLIDRLG 253


>gi|260890894|ref|ZP_05902157.1| BchE/P-methylase family protein [Leptotrichia hofstadii F0254]
 gi|260859447|gb|EEX73947.1| BchE/P-methylase family protein [Leptotrichia hofstadii F0254]
          Length = 442

 Score = 73.8 bits (180), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 54/330 (16%), Positives = 104/330 (31%), Gaps = 38/330 (11%)

Query: 48  FFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAG 107
              +  E ++  +DAD++V+    +    A   Y    R R              V+V G
Sbjct: 45  LIDERIEAIDYDNDADIVVI---TLETYTARHGYEIAKRFREKGKK---------VIVGG 92

Query: 108 CVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVD 167
             A    +E        + VV         +++E  R G         + +KF    I D
Sbjct: 93  THASLVPDE---AMKHADSVVTGYADDIWGKIIEDYRNGTEKKLYIGGLSNKF---LIPD 146

Query: 168 GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR-GIEISRSLSQVVDEARKLIDNGVCEIT 226
               +K+ + + +    GC   C FC +          R +  V++E + +       I 
Sbjct: 147 RSIFKKKYLISVVETGRGCPHHCEFCAISAVNKKRYAKRPVDSVIEELKHIKS---KYIF 203

Query: 227 LLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV 286
               N  A        +     +L   +  +K         +     ++ L+ A  D   
Sbjct: 204 FADDNFVA--------DPKYALELCEKIKPLKKKW--ISQGAITMAKNEKLLAAMRDSG- 252

Query: 287 LMPYLHLPVQSGSDRILKSMNRRHTAY--EYRQIIDRIRSVRPDIAISSDFIVGFPGETD 344
              ++ +  +S +   L +M +  +    +  +    I     +I I + F+ GF  +  
Sbjct: 253 -CLFILIGYESINKEALDNMKKEWSYKLGDIEESTRIIHKY--NIGIYATFVFGFEEKIG 309

Query: 345 DDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
             F  T+    K            P   T 
Sbjct: 310 TTFEDTVKFAQKNHLEFVQFNYLVPFPNTE 339


>gi|332653381|ref|ZP_08419126.1| radical SAM domain protein [Ruminococcaceae bacterium D16]
 gi|332518527|gb|EGJ48130.1| radical SAM domain protein [Ruminococcaceae bacterium D16]
          Length = 292

 Score = 73.8 bits (180), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 39/197 (19%), Positives = 82/197 (41%), Gaps = 16/197 (8%)

Query: 185 GCD-KFCTFCVVPYTRGIEISRSLSQVVD---EARKLIDNGVCEITLLGQNVNAWRGKGL 240
           GC    CTFC + Y       R + ++++    AR     G+  + L+  +    +   L
Sbjct: 25  GCSYNKCTFCAM-YKEKKFRIRPVEEILEDIDMARDYYGPGLKRVFLMDGDAVIMKTDDL 83

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300
                   D   +L ++      R T +   +     +KA  D    +   +L V+SGSD
Sbjct: 84  IRILRKLYDTFPALEKVTTYAGPRSTLAKSPEE----LKAIRDAG--LNRAYLGVESGSD 137

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGET---DDDFRATMDLVDKI 357
            +LK++N+  TA +  +   ++ +      + +  I+G  G+    ++   +T  +++ +
Sbjct: 138 AVLKAINKGVTAAQMLEAGQKLVAA--GFDLWAIVIMGLTGQDGDWEEHILSTAKMINAM 195

Query: 358 GYAQAFSFKYSPRLGTP 374
                 +  ++P  GTP
Sbjct: 196 KPRHLSAMTFAPAKGTP 212


>gi|284052148|ref|ZP_06382358.1| hypothetical protein AplaP_11831 [Arthrospira platensis str.
           Paraca]
          Length = 486

 Score = 73.8 bits (180), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 61/360 (16%), Positives = 122/360 (33%), Gaps = 41/360 (11%)

Query: 58  SMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEI 117
             + ADL++L    +      +    L +IR  K           V V G  A +   E+
Sbjct: 19  EWEWADLVILTAMIV------QKVDLLAQIREAKRRGKP------VAVGGPYATSVPGEV 66

Query: 118 LRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGV- 176
                  + ++  +    LPE +     G+         +       +            
Sbjct: 67  AA---EADYLILDEGEITLPEFVAAINRGETSGTFRSPDKADVNTTPVPRYDLLELDAYD 123

Query: 177 TAFLTIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW 235
           +  +    GC   C FC +    G +  +++  Q++ E   L + G      +  +    
Sbjct: 124 SMSVQFSRGCPFQCEFCDIIVLYGRKPRTKNPEQLLKELDYLYELGWRRGVFMVDD---- 179

Query: 236 RGKGLDGEKCTFSDLLYSLS--EIKGLVRLRYTTSHPRDM--SDCLIKAHGDLDVLMPYL 291
                 G K     LL +L   +I+     R+ T    D+   + L+    D +     +
Sbjct: 180 ---NFIGNKRNVKLLLKALKTWQIEHQYPFRFNTEASVDLAADEELMDMMVDCN--FDAV 234

Query: 292 HLPVQSGSDRILKSMNR-RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
            L +++  +  L    + ++T     + +D+I  +R  +   + FI+GF GE        
Sbjct: 235 FLGIETPDEASLALTKKYQNTRSSLSESVDKI--IRAGLRPMAGFIIGFDGEKSGAASRV 292

Query: 351 MDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACV 410
           ++ VD+ G   A          T   + L+      K  RLL  ++ + +     N   +
Sbjct: 293 IEFVDQAGIPTAMLGMLQALPNTGLWHRLD------KEGRLLADRENISQHAT--NQTML 344


>gi|119872225|ref|YP_930232.1| radical SAM domain-containing protein [Pyrobaculum islandicum DSM
           4184]
 gi|119673633|gb|ABL87889.1| Radical SAM domain protein [Pyrobaculum islandicum DSM 4184]
          Length = 531

 Score = 73.4 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 55/318 (17%), Positives = 109/318 (34%), Gaps = 34/318 (10%)

Query: 68  NTCHIREKAAEKVYSFLGRIRNLKN---SRIKEGGDLLVVVAGCVAQAE--GEEILRRSP 122
           +T  +          F  R     +      K    L V+  G  A       E++ R  
Sbjct: 117 STWSVIVGKEPMNAMFFKRFMEKISPLVREAKTKNKLKVIAGGPAAWQWLYFPELVERWG 176

Query: 123 IVNVVVGPQTYYRLPELLERARFGKRVVDTDYS-VEDKFERLSIVDGGYNRKRGVTAFLT 181
           I  +  G      + +L++ A   + +    Y  V +  +   I    Y    G+   + 
Sbjct: 177 IDTIFDGEGEKLIV-DLVKNALEDRPLPKYIYVGVHEAPDLSEISTIKYPSINGL---VE 232

Query: 182 IQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD 241
           I  GC + C FC  P T        L ++ +E +     GV +  L    V  +   G++
Sbjct: 233 IGRGCPRGCAFC--PVTLRALRWYPLDKIEEELKVNAKAGVVDGILHADEVPLYGSAGVE 290

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMS------------DCLIKAHGDLDVLMP 289
                      +L ++      +   SH   ++              L +   D      
Sbjct: 291 PNPERLI----ALHKLAKRYYRKVGWSHSTFVAVYHGEKKMGRLFTKLSEIIIDEHQDWW 346

Query: 290 YLHLPVQSGSDRILKSMN----RRHTAYEYRQIIDRIRSVRPDIA--ISSDFIVGFPGET 343
              + +++GS R+ + +       +   ++ +I+    ++  +I    +   IVG P E 
Sbjct: 347 GAQIGLETGSVRLAQKIMPGKAAPYKISQWHEIVTEAAAIMHEIRLIPAITLIVGLPDEQ 406

Query: 344 DDDFRATMDLVDKIGYAQ 361
            DD   T++LV+K+   +
Sbjct: 407 PDDVIETIELVEKLKPYR 424


>gi|78188087|ref|YP_378425.1| Elongator protein 3/MiaB/NifB [Chlorobium chlorochromatii CaD3]
 gi|78170286|gb|ABB27382.1| Elongator protein 3/MiaB/NifB [Chlorobium chlorochromatii CaD3]
          Length = 471

 Score = 73.4 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 56/346 (16%), Positives = 106/346 (30%), Gaps = 42/346 (12%)

Query: 41  SLRMEDMFFSQGYERV---------NSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLK 91
           SL +       G ++V         +     DL+ +    ++   A K +     +R   
Sbjct: 58  SLMILSSLEVAGVQQVICDLRFEDFDFEMKWDLVGI---SVQSGMARKAFELADALRAKG 114

Query: 92  NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVD 151
                 G  + +    C             P  +V+V  +      E L      +    
Sbjct: 115 IKVALGGAHVTLFPESC------------QPHADVLVPGEADEVWEEALRDLVANRLQPL 162

Query: 152 TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQ--EGCDKFCTFCVVPYTRGI-EISRSLS 208
                    +    V     +         IQ   GC   C FC V    G     R ++
Sbjct: 163 YRAESFPNLQHARPVSKQALQPERYFTTNLIQTGRGCPYNCDFCNVHVLNGHTLRQRRIT 222

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
            VV E  +   +       +  ++NA        +     +L  SL+ +K  +R     +
Sbjct: 223 DVVQEVARFQQDDQRIFFFVDDSINA--------DPAYALELFQSLTPLK--IRWFGQAT 272

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR-P 327
                   L+ A  D       L + ++S  +    +  ++       +++  I ++R  
Sbjct: 273 TTLGQQHELLSAFADSG--CQALLVGIESIENASRTAHAKQQNRAN--ELVSAITTIRQA 328

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
            I++   FI G  G+T +   A +D V +            P  GT
Sbjct: 329 GISLYGSFIYGLDGDTLETPAAILDFVAQTKLDVPGINILRPTPGT 374


>gi|302874528|ref|YP_003843161.1| cobalamin B12-binding domain-containing protein [Clostridium
           cellulovorans 743B]
 gi|307690860|ref|ZP_07633306.1| cobalamin B12-binding domain-containing protein [Clostridium
           cellulovorans 743B]
 gi|302577385|gb|ADL51397.1| cobalamin B12-binding domain protein [Clostridium cellulovorans
           743B]
          Length = 551

 Score = 73.4 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 47/310 (15%), Positives = 106/310 (34%), Gaps = 38/310 (12%)

Query: 60  DDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILR 119
           ++AD++ ++T              +     L N       ++ +V  G     +    L+
Sbjct: 54  EEADVVAIST----------YIWNVEMATRLANLIKAVNPEIEIVYGGPEVSYDSRSFLK 103

Query: 120 RSPIVNVVVGPQTYYRLPEL--------------LERARFGKRVVDTDYSVEDKFERLSI 165
                 ++ G         +              L   R G    +    +    + L  
Sbjct: 104 DHVGDYIIEGEGEKTYREFIEYKLGVNEIEYIKGLHYKRDGVVFSNETRPLMTFEDVLFP 163

Query: 166 VDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEI 225
            +   +    +  F +   GC   C++C+   + G     S+ +V+ E +  ID  V  +
Sbjct: 164 YEEDEDLNNKIVYFES-SRGCPFSCSYCLSSTSHG-VRFHSIDRVLKELQYFIDKKVRLV 221

Query: 226 TLLGQNVNAWRGKGLDGEKCTFSDLLYS-LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL 284
             + +  N             FS  ++  L +     +  +  S    +    I    + 
Sbjct: 222 KFVDRTFNCNH---------KFSMAIWEFLIKADTKTQFHFEISADI-LKQEEIDLLRNA 271

Query: 285 DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETD 344
                   + VQ+ +D +L+++NR     + ++ +  + S++ +I    D I G PGE  
Sbjct: 272 PEGRFQFEVGVQTTNDDVLRNINRFVNFSDIKEKVIELMSIK-NIKQHLDLIAGLPGEDY 330

Query: 345 DDFRATMDLV 354
           + F+ + + V
Sbjct: 331 ESFKKSFNDV 340


>gi|330506920|ref|YP_004383348.1| radical SAM domain-containing protein [Methanosaeta concilii GP-6]
 gi|328927728|gb|AEB67530.1| radical SAM domain protein [Methanosaeta concilii GP-6]
          Length = 486

 Score = 73.4 bits (179), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 40/243 (16%), Positives = 82/243 (33%), Gaps = 23/243 (9%)

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAF------LTIQEGCDKFCTFCV 194
                 + V +    + D  +            RG   F      +    GC + C FC 
Sbjct: 147 HDPGSNRMVHNPARPLLDVSDIRMPNRDARLITRGFLTFDVPIDSVETSRGCTQGCKFCS 206

Query: 195 VPYTRGIE-ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS 253
           +    G    +  + +VV++ R   ++G   I     N+                 L  +
Sbjct: 207 INLMYGRHFRTFPIERVVEDIRDAEEHGAGSIFFPDDNIT--------LNPKRLERLCQA 258

Query: 254 LSEIKGLVRLRY---TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
           + +  GL  LRY    ++     S  L+   G+       + L V+S + R L+ + +  
Sbjct: 259 IIDA-GLTHLRYKTQASASGIASSKRLVDKMGEAG--FDGVFLGVESINKRNLEFLGKGK 315

Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370
            + +    +  +     +I +S+  I G P + ++D      L  ++       +  +P 
Sbjct: 316 MSNDAEIAVQYLHDN--NIIVSTGLIGGNPDDDEEDLWENFHLARRLKVDFPIFYISTPY 373

Query: 371 LGT 373
             T
Sbjct: 374 PKT 376


>gi|110597744|ref|ZP_01386028.1| Radical SAM [Chlorobium ferrooxidans DSM 13031]
 gi|110340651|gb|EAT59131.1| Radical SAM [Chlorobium ferrooxidans DSM 13031]
          Length = 477

 Score = 73.4 bits (179), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 51/291 (17%), Positives = 83/291 (28%), Gaps = 27/291 (9%)

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
            R+L++  IK      VV+ G       E         + +V  +      E+ E  R G
Sbjct: 110 ARHLRSKGIK------VVLGGPYVTIFPENCRS---HADAIVIGEADEIWREVQEDLRRG 160

Query: 147 --KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG-IEI 203
             K     +   +   ER         R    T  +    GC   C FC V    G    
Sbjct: 161 ALKPEYRVETFPDLSAERTVSKSALDIRSYFTTNVVQTTRGCPYSCDFCNVHVMNGHRLR 220

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
            R +  V+ E    +         L   VNA      +         +  + +       
Sbjct: 221 HRRVRDVLREVELFLKEDKRIFFFLDDTVNADEAYAHELFTGLIPFGIKWVGQ------- 273

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE-YRQIIDRI 322
               +        L++A          L + ++S  D    +  + H       + I  I
Sbjct: 274 ---ATTALGEQPKLLEAFARSG--CGALLVGIESIEDGSNHAHKKFHNPAMRQVECIQNI 328

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
           R     I +   FI G  G+T          +++ G          P  GT
Sbjct: 329 RKA--GICVYGSFIYGLDGDTLGLPDRIEAFIEETGIDVPGINLLRPIPGT 377


>gi|78224382|ref|YP_386129.1| radical SAM family protein [Geobacter metallireducens GS-15]
 gi|78195637|gb|ABB33404.1| Radical SAM [Geobacter metallireducens GS-15]
          Length = 842

 Score = 73.4 bits (179), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 52/283 (18%), Positives = 94/283 (33%), Gaps = 38/283 (13%)

Query: 131 QTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190
                +  ++       RV     S  D     +     + +       + I  GC + C
Sbjct: 206 HDDGTIDAIIPLRPAHGRVRRRFLSDLDTAPYPTAPVVPFLKTIHDRVSIEIGRGCTRGC 265

Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFSD 249
            FC   Y       RS   ++    + + N G  E++LL  +          G+    + 
Sbjct: 266 RFCQAGYLYRPVRERSPETILKLVEETLRNTGYDEVSLLSLST---------GDYGCLTP 316

Query: 250 LLYSLSEIKGLVRLRYTTSHPRD--MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307
           LL  L       R+       R   +S  L++    +        L  ++GS+R+   +N
Sbjct: 317 LLRELMVRYAHERIAVALPSLRVGSLSQELVEEIRKVRK--TGFTLAPEAGSERLRTIIN 374

Query: 308 RRHTAYEYRQIIDRIRSVRPDIA-----ISSDFIVGFPGETDDDFRATMDLVDKIGYA-- 360
           +  +        D +R+     +     I   F++G PGET++D     DL  K+     
Sbjct: 375 KGISEE------DLLRNAFEAFSNGWRVIKLYFMIGLPGETEEDLVGIADLARKVKQEGK 428

Query: 361 --------QAFSFKYSPRLGTPGSNMLEQV--DENVKAERLLC 393
                         + P+  TP      Q+  +E V  +R L 
Sbjct: 429 RAGSGGEVNVSVSTFVPKPHTP-FQWEPQITTEETVAKQRFLR 470


>gi|78221328|ref|YP_383075.1| radical SAM family protein [Geobacter metallireducens GS-15]
 gi|78192583|gb|ABB30350.1| Radical SAM [Geobacter metallireducens GS-15]
          Length = 624

 Score = 73.4 bits (179), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 40/202 (19%), Positives = 68/202 (33%), Gaps = 16/202 (7%)

Query: 181 TIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL 240
            +  GCD  C +C            SL +V  E   L+ + V ++ +L    N       
Sbjct: 187 QLSRGCDFACEYCFDYKGTKGVRRFSLERVDAELDFLVRHNVPQVFVLDSTFNV----DA 242

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL-DVLMPYLHLPVQSGS 299
              K     +           R  +   H    S+ L +    L   +   L + +QS  
Sbjct: 243 KRAKTILRMIRK---------RAPHIHFHFEVRSEFLDREMARLFAGITCSLQIGLQSAD 293

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
             ILK + R     ++R+ +  +           D I G PG++   FR ++D    +  
Sbjct: 294 PAILKGIRRHFDPDDFRKRVALLNES--GAVFGFDLIYGLPGDSLAGFRQSLDFALALYP 351

Query: 360 AQAFSFKYSPRLGTPGSNMLEQ 381
                F  +   GTP +    Q
Sbjct: 352 NHLDIFPLAVLPGTPLAARAAQ 373


>gi|327541076|gb|EGF27626.1| radical SAM/B12 binding domain-containing protein [Rhodopirellula
           baltica WH47]
          Length = 567

 Score = 73.4 bits (179), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 48/286 (16%), Positives = 92/286 (32%), Gaps = 25/286 (8%)

Query: 99  GDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVED 158
               VV+ G     E +    R   V+VV   +     P  L+  + G      + + + 
Sbjct: 92  RGCFVVIGGPWVTVEEDYFGDR---VDVVFIGEAEVTWPRFLKEWQEGDYGQRYEQTDKT 148

Query: 159 KFERLSIVDGGY-NRKRGVTAFLTIQEGCDKFCTFC-VVPYTRGIEISRSLSQVVDEARK 216
           +   +          K  +   L I  GC   C FC ++         +  SQV  E   
Sbjct: 149 EMTTVPTPRHDLLKNKHYLVGSLQISRGCPFQCEFCDIIVTFGRRPRIKQASQVTAELDS 208

Query: 217 LIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMS-- 274
           L+  G+  + ++  N+         G K     +L  ++  +         S    +   
Sbjct: 209 LLTQGMHIVFIVDDNLI--------GNKKAIKPVLREVATWQQRHGYPIVFSTEASLDLC 260

Query: 275 --DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR----RHTAYEYRQIIDRIRSVRPD 328
             D L++   + ++    + + ++S  +  LK   +    R       + + RI+     
Sbjct: 261 EDDELMELMAEANI--QSVFIGLESPDEESLKETKKYQNVRSRGGTMLEKVHRIQDF--G 316

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
           + +    IVGF  +T   F      +     A A          TP
Sbjct: 317 MEVWCGLIVGFDNDTSAIFETQQKFLKDSRIAHAMVGLLHAIPKTP 362


>gi|297250417|ref|ZP_06934025.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Neisseria polysaccharea
           ATCC 43768]
 gi|296838983|gb|EFH22921.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Neisseria polysaccharea
           ATCC 43768]
          Length = 63

 Score = 73.4 bits (179), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 1/61 (1%)

Query: 409 CVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467
            VG +   L+E   K +  +L  R+   + V        I  +I + IT+    +L G++
Sbjct: 1   MVGTVQRCLVEGISKKDPDQLQARTANNRVVNFTGTPDMINQMIDLEITEAYTFSLRGKV 60

Query: 468 V 468
           V
Sbjct: 61  V 61


>gi|15897520|ref|NP_342125.1| hypothetical protein SSO0604 [Sulfolobus solfataricus P2]
 gi|284174839|ref|ZP_06388808.1| hypothetical protein Ssol98_09326 [Sulfolobus solfataricus 98/2]
 gi|6015869|emb|CAB57696.1| hypothetical protein [Sulfolobus solfataricus P2]
 gi|13813769|gb|AAK40915.1| Conserved hypothetical protein [Sulfolobus solfataricus P2]
          Length = 506

 Score = 73.4 bits (179), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 49/287 (17%), Positives = 100/287 (34%), Gaps = 18/287 (6%)

Query: 88  RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147
           +       K G  +LV           E+++ +   V+ +V  +    + +L +     +
Sbjct: 136 KPEIQEAKKRGMKILVGGPSTWQWLWREDMIEKV-GVDTLVDGEGEKVVVKLAQMILDNE 194

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
            +    Y   D  +   I D    +   V   + I  GC + C FC V           L
Sbjct: 195 PLPKYVYVSGD--DVPDIDDISEIKGASVNGMIEIMRGCARSCRFCSVTI--RPTRYYPL 250

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG---LVRLR 264
            ++  E +  +  GV    +   +V  +   G+         L   + +           
Sbjct: 251 EKIEKELQTNVRAGVRHGVVHSDDVLFYGAVGIYPRPEPLIKLHTLVKKYYKTIAWSHAS 310

Query: 265 YTTSHPRDMSDCLI----KAHGDLDVLMPYLHLPVQSGSDRILKSMN----RRHTAYEYR 316
                  +    LI    +   D +     + + +++GS ++ K +       +   EY 
Sbjct: 311 LAAIRYSEEKYGLISKLGEIIFDDEQRYLGVEVGIETGSVKLAKEIMPAKSAPYKPEEYP 370

Query: 317 QIIDRIRSVRPD--IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
           +I++    +  +  I  +   IVG P ET+DD   T++LVD +   +
Sbjct: 371 EIVEEAFKIMHENKIIPAGTMIVGLPEETEDDVYRTIELVDNLRPYR 417


>gi|332796822|ref|YP_004458322.1| Fe-S oxidoreductase [Acidianus hospitalis W1]
 gi|332694557|gb|AEE94024.1| Fe-S oxidoreductase [Acidianus hospitalis W1]
          Length = 503

 Score = 73.4 bits (179), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 53/288 (18%), Positives = 105/288 (36%), Gaps = 19/288 (6%)

Query: 88  RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147
           R       K G  +LV           E+++ +   VN +V  +    + +L +    G+
Sbjct: 132 RPEITEGKKHGMKILVGGPSTWQWLWREDMIEKL-GVNTLVDGEGEKVIVKLAQMILDGE 190

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
            +    Y   D  +  SI D    +   V   + I  GC + C FC V           L
Sbjct: 191 ELPKYIYVSGD--DVPSIEDIPDIKGGSVNGLIEIMRGCARSCRFCSVTL--RPTRYYPL 246

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG-------- 259
            ++  E +  +  G+    +   +V  +   G+  +      L   + +           
Sbjct: 247 DKIERELQVNVKAGIKHGVIHSDDVLFYGAVGILPKPEPLIKLHQLVKKYYKTIAWSHAS 306

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN----RRHTAYEY 315
           L  +RY+      +S  +   + D +     + + +++GS R+ K +       +    Y
Sbjct: 307 LAAIRYSEEKYGLVSKLMEIVYQDGNQNYLGVEVGIETGSVRLAKEIMPAKSAPYKPENY 366

Query: 316 RQIIDRIRSVRP--DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
            + ++    +     I  +   IVG P ET+DD   T++LVD +   +
Sbjct: 367 PETVEEAFKIMHENHIIPAGTMIVGLPEETEDDVYRTIELVDNLRPYR 414


>gi|111219793|ref|YP_710587.1| putative F-S oxidoreductase [Frankia alni ACN14a]
 gi|111147325|emb|CAJ58975.1| putative F-S oxidoreductase; putative methyltransferase [Frankia
           alni ACN14a]
          Length = 522

 Score = 73.4 bits (179), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 37/202 (18%), Positives = 73/202 (36%), Gaps = 15/202 (7%)

Query: 179 FLTIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG 237
            +    GC   C +C      G     RS + VV E     +         G +      
Sbjct: 221 PIVTTRGCPYQCVYC--HDIMGKSVRYRSAAAVVAEVDYWREAA-------GVDTFLVYD 271

Query: 238 KGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQS 297
              +  +    ++    +   GL            +++ ++    +      Y  + V+S
Sbjct: 272 DIFNIHRGRVREIFAEFARRPGLRFAFPNGLRADLLTEDIVDLLLEGGTF--YAMVAVES 329

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL-VDK 356
           G  R+ + + +R      R++I+ + +    + + S  I GFP E++ D   T++     
Sbjct: 330 GDRRVQEVIKKRLNLERTRRMIEYMGNA--GVILGSFNIFGFPSESEADIERTIEFNAST 387

Query: 357 IGYAQAFSFKYSPRLGTPGSNM 378
            G ++A  F  SP  GT   +M
Sbjct: 388 TGLSKANFFVLSPHEGTEVWDM 409


>gi|298674930|ref|YP_003726680.1| radical SAM domain-containing protein [Methanohalobium evestigatum
           Z-7303]
 gi|298287918|gb|ADI73884.1| Radical SAM domain protein [Methanohalobium evestigatum Z-7303]
          Length = 523

 Score = 73.4 bits (179), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 43/288 (14%), Positives = 112/288 (38%), Gaps = 20/288 (6%)

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           L R++     +     +  V+  G  A    +E L     ++ V   +    +PE++E  
Sbjct: 135 LNRVKFFDLMKKPIMKEKTVIAGGKSAWQLADESLMDKLNIDYVHLGRGEITVPEIVESI 194

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
             G++        E   + +  + G       +   + +  GC + C+FC  P  + +  
Sbjct: 195 FNGEKPSRIIEGKEPNVDNIPNIKGAT-----IHGLVEVFRGCGRGCSFC-TPTMQKLHF 248

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
            + +  ++ + +  ++ G   I L  +++  +  KG+        DL   +   +G+ ++
Sbjct: 249 -KPIEHILQDVQTNVNFGQHSIILHSEDILRYGAKGIKPNSEQVLDLFKQVVSTEGVDKI 307

Query: 264 RYTT--SHPRDMSDCLIK-----AHGDLDVLMPYLHLPVQSGSDRILKSMNRRH----TA 312
             +         +  L++      + +L+         +++GS R++           + 
Sbjct: 308 GTSHLALATVYSNPELVESVTDTCYSELEQNSLGAQTGIETGSTRLIARYMEGKSLPESP 367

Query: 313 YEYRQIIDRIRSVRPD--IAISSDFIVGFPGETDDDFRATMDLVDKIG 358
            ++++++ +   +  D     ++  I G P ET DD   +++LV  + 
Sbjct: 368 EKWQEVVKQAYGILDDNNWITAATLINGLPSETTDDINTSIELVKDLK 415


>gi|91203722|emb|CAJ71375.1| hypothetical protein kustc0630 [Candidatus Kuenenia
           stuttgartiensis]
          Length = 514

 Score = 73.4 bits (179), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 76/422 (18%), Positives = 130/422 (30%), Gaps = 71/422 (16%)

Query: 43  RMEDMFFSQGY--ERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN-------- 92
            +       GY  E VN  +    I  N   I  +   +    +G    + +        
Sbjct: 31  YLAGYLEKHGYFAEIVNPHEK--HIEDNFKAIINEVITRKPKLIGLASFVTDYNVVVGLA 88

Query: 93  SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE----------- 141
           + IK+  D  ++V         E+ L  S   ++VV  +    L +LLE           
Sbjct: 89  TEIKKYSDAKIIVGNAHPSIAPEDFLYESSPFDIVVRGEGELTLKQLLEEFSKTGGFNDA 148

Query: 142 -----------------RARFGKRVVD------TDYSVEDKFERLSIVDGGYNRKRGVTA 178
                            +    + ++D        Y   D    L I      R   V A
Sbjct: 149 NGLSHINGIAYFENGAVKITKNRELMDLADCGTPAYHKIDMKWYLKITKHIIRRLATVGA 208

Query: 179 FLTIQEGCDKFCTFCV---VPYTRGI------EISRSLSQVVDEARKLID-NGVCEITLL 228
            +    GC   CTFC    V               R L+ V+DE R L D        +L
Sbjct: 209 VIYTGRGCPFHCTFCAANSVWSANDKAPGNPVVRKRPLAHVIDELRILQDVYKFDFFYIL 268

Query: 229 GQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLM 288
                      +D  K      L  L   +  V               ++K   +   + 
Sbjct: 269 DDTFGTREKDIIDFCKAYSESGLKMLWAAETRVNCIK--------DMQIVKLLKESGSI- 319

Query: 289 PYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFR 348
             L   V++GS R+LK++ ++    +  Q  D  R     I   ++ +V  PGE  +D  
Sbjct: 320 -QLDFGVETGSPRLLKAIKKQIVLEDTIQAFDLCRKN--GIRTFANMLVNLPGEEAEDLN 376

Query: 349 ATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDA 408
            T  L+ +I           P  GT    M   + + +  +    L + +  ++   +  
Sbjct: 377 LTHKLLAEIKPTYTSVGVTQPYPGT---EMYINLGKPISNKDYHKLSRLIPPEEFRMSKH 433

Query: 409 CV 410
            +
Sbjct: 434 KI 435


>gi|298504385|gb|ADI83108.1| radical SAM domain iron-sulfur cluster-binding oxidoreductase
           [Geobacter sulfurreducens KN400]
          Length = 626

 Score = 73.4 bits (179), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 37/196 (18%), Positives = 71/196 (36%), Gaps = 20/196 (10%)

Query: 181 TIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL 240
            +  GCD  C +C            SL ++  E   ++ +GV ++ +L            
Sbjct: 187 QLARGCDFSCEYCFDDKGERGVRRYSLERIDAELDVIVRSGVPQVFVLD----------- 235

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPR-DMSDCLIK-AHGDL-DVLMPYLHLPVQS 297
                TF+       ++  ++R R    H   ++    I      L   +   L + +QS
Sbjct: 236 ----STFNQDRERAKKVLKMIRARARHVHFHFEVRSEFIDREMAKLFAGITCSLQIGLQS 291

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
              +IL+ + R     ++R+ I  +           D I G PG++   FR ++D   ++
Sbjct: 292 ADPKILRRIRRHLDPDDFRERIGLLNES--GAIFGFDLIYGLPGDSLAAFRRSLDFALEL 349

Query: 358 GYAQAFSFKYSPRLGT 373
                  F  +   GT
Sbjct: 350 YPNHLDIFPLAILPGT 365


>gi|150400199|ref|YP_001323966.1| radical SAM domain-containing protein [Methanococcus vannielii SB]
 gi|150012902|gb|ABR55354.1| Radical SAM domain protein [Methanococcus vannielii SB]
          Length = 509

 Score = 73.4 bits (179), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 53/339 (15%), Positives = 114/339 (33%), Gaps = 47/339 (13%)

Query: 170 YNRKRGVTAFLTIQEGCDK----FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEI 225
           +     + A +    GC +     C+FC  P   G    R+   ++ E + L +NG+   
Sbjct: 177 HPNYPNIIAEIETARGCSRAHSGGCSFCTEPKRYGTPKFRNSENIIFEVKNLYENGIEYF 236

Query: 226 TLLGQNVNAWRGKGLDGEKCT------FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIK 279
            +  Q          D E+           L   ++ +     L    ++P  +S    +
Sbjct: 237 RIGRQPCIFSYMAKDDSEEIPKPNVFEIEKLFRGINAVSKPKVLHIDNANPSVISRHEKE 296

Query: 280 AHGDLDVLMPY------LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV-------- 325
                 +L+ Y          V+S  +R++   N      +    ++ +  +        
Sbjct: 297 GREIAKILVRYCTPGNVAAFGVESFDERVILKNNLLTEPEDILNAVNILNEIGGMRGENG 356

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIG-----YAQAFSFKYSPRLGTPGSNMLE 380
            P +    + + G  GE+++ F    + + +I        +    +  P  GT     L 
Sbjct: 357 MPYLLPGINLLFGLKGESNETFEINYNYLKEIYNSKNLIRRINIRQAVPFFGTD----LN 412

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKH---------GKEKGKLVGR 431
             D     +R     K     +   ++  + +   VL E            +++    GR
Sbjct: 413 LKDIEKAKKRKNLFVKFKERIRTEIDNPMLKR---VLFEGTVLKDVFIELKEKENLYFGR 469

Query: 432 --SPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
               +   V +  KN  IG+ + +R+T     ++ G++V
Sbjct: 470 QFGSYPILVGITEKNLEIGNFVDIRVTGYGRRSITGKVV 508


>gi|39995383|ref|NP_951334.1| radical SAM domain-containing protein [Geobacter sulfurreducens
           PCA]
 gi|39982145|gb|AAR33607.1| radical SAM domain protein [Geobacter sulfurreducens PCA]
          Length = 589

 Score = 73.4 bits (179), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 37/196 (18%), Positives = 71/196 (36%), Gaps = 20/196 (10%)

Query: 181 TIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL 240
            +  GCD  C +C            SL ++  E   ++ +GV ++ +L            
Sbjct: 150 QLARGCDFSCEYCFDDKGERGVRRYSLERIDAELDVIVRSGVPQVFVLD----------- 198

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPR-DMSDCLIK-AHGDL-DVLMPYLHLPVQS 297
                TF+       ++  ++R R    H   ++    I      L   +   L + +QS
Sbjct: 199 ----STFNQDRERAKKVLKMIRARARHVHFHFEVRSEFIDREMAKLFAGITCSLQIGLQS 254

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
              +IL+ + R     ++R+ I  +           D I G PG++   FR ++D   ++
Sbjct: 255 ADPKILRRIRRHLDPDDFRERIGLLNES--GAIFGFDLIYGLPGDSLAAFRRSLDFALEL 312

Query: 358 GYAQAFSFKYSPRLGT 373
                  F  +   GT
Sbjct: 313 YPNHLDIFPLAILPGT 328


>gi|225629590|ref|ZP_03787610.1| MiaB-like tRNA modifying enzyme [Wolbachia endosymbiont of
           Muscidifurax uniraptor]
 gi|225591556|gb|EEH12576.1| MiaB-like tRNA modifying enzyme [Wolbachia endosymbiont of
           Muscidifurax uniraptor]
          Length = 125

 Score = 73.4 bits (179), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 24/112 (21%), Positives = 51/112 (45%), Gaps = 16/112 (14%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           V ++GC++N Y+S  +++       E        +++V+++C +  +A  +V   + +I 
Sbjct: 4   VITFGCRLNFYESELIKEALKKAKRE--------NVVVVHSCAVTNEAERQVKQKIRKI- 54

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140
                  K   +  ++V GC  Q +  E+    P V+ V+G Q   +    L
Sbjct: 55  ------YKNDPNKEIIVVGCAVQLDP-EVYSSIPGVSKVLGNQDKLKAENYL 99


>gi|299138052|ref|ZP_07031232.1| Radical SAM domain protein [Acidobacterium sp. MP5ACTX8]
 gi|298599982|gb|EFI56140.1| Radical SAM domain protein [Acidobacterium sp. MP5ACTX8]
          Length = 489

 Score = 73.4 bits (179), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 53/250 (21%), Positives = 86/250 (34%), Gaps = 28/250 (11%)

Query: 122 PIVNVVVGPQTYYRLPELLERARFGKRVVD-------TDYSVEDKFERLSI---VDGGYN 171
            +++ + G +    +  LL +  FG R  +        D      F RL +   +   + 
Sbjct: 124 ELLDALRGNRELDTIKGLLYKDMFGLRRDNGERPMKGPDEFPWSPFHRLPVEKYLRPSFF 183

Query: 172 RKRGVTAFLTIQEGCDKFCTFCVVPYTRG-IEISRSLSQVVDEARKLIDNGVCEITLLGQ 230
            KR      +I  GC   C+FC V    G  E   S  + V     L+            
Sbjct: 184 GKRTAVHHASI--GCPFNCSFCGVHAAYGNKEKFESPERTVAILTHLVK----------- 230

Query: 231 NVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD-MSDCLIKAHGDLDVL-M 288
           N  A   +  D       D    L +    + LR+      D MS    +    +     
Sbjct: 231 NYGADSVQFYDMNFFLREDKARELCDGMAHLNLRWWCEARVDIMSRYSDETWASIKRAGC 290

Query: 289 PYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFR 348
             +    +SGSD +L+ M +  T  +  +I  R R     I     F++G P + D D  
Sbjct: 291 AMIFFGAESGSDWVLEEMQKGITTAQTLEIARRTRQF--GIIPEFSFVIGNPNDPDRDTH 348

Query: 349 ATMDLVDKIG 358
            T+  + KI 
Sbjct: 349 ETLRFIRKIK 358


>gi|78188097|ref|YP_378435.1| Elongator protein 3/MiaB/NifB [Chlorobium chlorochromatii CaD3]
 gi|78170296|gb|ABB27392.1| Elongator protein 3/MiaB/NifB [Chlorobium chlorochromatii CaD3]
          Length = 609

 Score = 73.4 bits (179), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 70/356 (19%), Positives = 114/356 (32%), Gaps = 61/356 (17%)

Query: 42  LRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDL 101
             M  +   Q           DL+ +++              +   +  K +        
Sbjct: 57  ESMRRLLKEQ---------PCDLVAISSMT------GAFNQAIKLAKIAKEA------GA 95

Query: 102 LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER-----------------AR 144
            V++ G    A  EE+L +   V+VVV  +      EL++                   R
Sbjct: 96  FVIMGGFHPTALPEEVL-KHSCVDVVVIGEGEETFRELVKNGPSRNVRGIAYRDNGGIVR 154

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTI--QEGCDKFCTFCVVPYTRGIE 202
              R V T+      F   S+    Y       +  TI    GC   C+FC         
Sbjct: 155 TEPRPVITNIDTI-PFPLRSLRPKRYGETGDAYSIDTIYTSRGCPWSCSFCANDQMHKAW 213

Query: 203 ISRSLSQVVDEARKLID-NGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
             RS   VV+E   L D      I +   N     G+         ++ +  L   KGL 
Sbjct: 214 RGRSPENVVEEIALLHDPKNKKLIKIWDANFLTNIGR---------AEKICDLLLEKGLT 264

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVL-MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
             R  T           +  G L  + +    L ++S +   L  MN++++  +  + I+
Sbjct: 265 NFRIVTETRAKDIVRAERILGKLRQIGLSKAGLGIESPNKETLALMNKQNSLNDVSKAIE 324

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATM---DLVDKIGYAQAFSFKYSPRLGT 373
             R     I     FI+G   E   D  AT+   +    +G  QA     +P  GT
Sbjct: 325 LCRK--HGIGTEGYFIIGHYSE---DMTATLAYPEFARSLGLRQALFMVMTPYPGT 375


>gi|15679772|ref|NP_276890.1| Mg-protoporphyrin IX monomethyl ester oxidative cyclase
           [Methanothermobacter thermautotrophicus str. Delta H]
 gi|2622915|gb|AAB86250.1| Mg-protoporphyrin IX monomethyl ester oxidative cyclase
           [Methanothermobacter thermautotrophicus str. Delta H]
          Length = 461

 Score = 73.4 bits (179), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 58/316 (18%), Positives = 100/316 (31%), Gaps = 50/316 (15%)

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG-- 146
               +      ++L V+ G        + LR    ++VVV  +    + +L E    G  
Sbjct: 82  EYIKAIKDRLPNVLTVIGGPHPTFLPVDTLRECRDLDVVVMGEGEATIVDLAENHERGGS 141

Query: 147 -------------------KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCD 187
                               R +  D        R  +    Y         +    GC 
Sbjct: 142 LDGVAGITYREGDRIRTNEPRPLIEDLDEIPFPARHLVPFRDYETSSQDAGGMITSRGCV 201

Query: 188 KFCTFCVVPYTRG---IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK 244
             C +C      G      S   + V +    +   G+ +I  L                
Sbjct: 202 YPCRYCSSSLIMGKKFRFRS-PENVVDEVEELVEVYGLHDIAFLDD-------------- 246

Query: 245 CTFSDLLYSLSEIKGLVRLR-----YTTSHPRDMSDC-LIKAHGDLDVLMPYLHLPVQSG 298
            TF        EI   +R R     + TS   DM    L++   +    M  ++  V+SG
Sbjct: 247 -TFMLHRPRAREISEEIRRRNLDVSFVTSSRVDMVQESLLRDLRNAG--MSTIYYGVESG 303

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
             R+L  M +  T  +    +   + V   + + + FI+G+PGE   +   T+D   K+ 
Sbjct: 304 CQRVLDMMKKGITVKQAEDAVRVTKKV--GVDVITSFILGYPGEKPSEMDRTIDFSIKLD 361

Query: 359 YAQAFSFKYSPRLGTP 374
              +     +P  GTP
Sbjct: 362 PDYSQYSILTPFPGTP 377


>gi|269792537|ref|YP_003317441.1| Radical SAM domain-containing protein [Thermanaerovibrio
           acidaminovorans DSM 6589]
 gi|269100172|gb|ACZ19159.1| Radical SAM domain protein [Thermanaerovibrio acidaminovorans DSM
           6589]
          Length = 556

 Score = 73.4 bits (179), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 69/394 (17%), Positives = 137/394 (34%), Gaps = 61/394 (15%)

Query: 103 VVVAGCVAQAEGEEILRRSPIVNVVVGP-QTYYRLPELLERARFGKRVVDTDYSVEDKFE 161
           V+ A C+A  + E +L       +V G  Q  Y   +L   A  G +VV           
Sbjct: 123 VLAADCIATGDPEAVLASWLDGGLVDGTLQRDYGQLDLW--AEMGAQVV----------- 169

Query: 162 RLSIVDGGYNRKRGVTAFLTIQEGCDK---FCTFCVVPYTRGIEISRSLSQVVDEARKLI 218
                   +     V A L +  GCD+    C+FCV       E  R +  +  E R L 
Sbjct: 170 ------RMHPNYPLVMAELELSRGCDRTDGRCSFCVEGVAGLREE-RPVESIAREVRALS 222

Query: 219 DNGVCEITLLGQNVNAWRG-----KGLDGEKCTFSDLLYSLSEIKGLVRLRY-------T 266
             GV    L         G     +G+        +L  ++ +    +++ +       T
Sbjct: 223 RMGVKAFRLGRCANVLGYGGQVTPRGVRPSPSRIGELYQAIRDSAPDLKVLHMDNGNPKT 282

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV- 325
            +   + S  ++     ++     + + ++S    +++  N + T  +    +  +  V 
Sbjct: 283 IATFPEESSQVLDVISKMNTPGDTVSMGLESLHPEVVRKNNLKVTLEQALVAVRVVNQVG 342

Query: 326 --------RPDIAISSDFIVGFPGETDDDFRATMDLV-----DKIGYAQAFSFKYSPRLG 372
                    P +    +FIVG PGET          +     + +   +    +     G
Sbjct: 343 GGRPGGNGLPSLLPGLNFIVGLPGETSKTLEENRRFLTQILEEGLMVRRINIRRPMEFPG 402

Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACV---GQIIE-VLIEKHGKEKGKL 428
           TP  +M       +        ++ +R++      + V   G +IE V+ E+       +
Sbjct: 403 TPMGDMGG---SKIDQRTYRRFKEWVRQEVDPIMFSRVAPPGTVIEDVICEERS--GNLI 457

Query: 429 VGR--SPWLQSVVLNSKNHNIGDIIKVRITDVKI 460
            GR    +   + + S++ N G+++ V +T    
Sbjct: 458 FGRPLGSYPPLIGIWSRDLNEGEVVNVMVTGAGP 491


>gi|217967619|ref|YP_002353125.1| radical SAM protein [Dictyoglomus turgidum DSM 6724]
 gi|217336718|gb|ACK42511.1| Radical SAM domain protein [Dictyoglomus turgidum DSM 6724]
          Length = 597

 Score = 73.4 bits (179), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 63/363 (17%), Positives = 127/363 (34%), Gaps = 31/363 (8%)

Query: 48  FFSQGYERVNSMDD-ADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVA 106
               G   V + +  AD   +       +A E +   +      K    +   +L   ++
Sbjct: 139 LIVAGGPTVLNPEPIADFFDI---IFIGEAEEALDEIVDIYIKWKEETKRSKEELFKALS 195

Query: 107 GCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIV 166
                                     Y   P++++R    + V D D +       + + 
Sbjct: 196 KVEGVYIPSLYEVEYKNGKFFNLTPKYDWTPKVIKR----RIVYDLDNTFFPTKPLVPLQ 251

Query: 167 DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEIT 226
              ++R      F+ I  GC + C FC   Y    +  RS+ ++++  R++I N   E  
Sbjct: 252 QVVHDR-----GFVEIMRGCQRNCRFCFAGYIYRPKRYRSVEKIINYVREIIKNTGYE-- 304

Query: 227 LLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV 286
               ++ +         +   + L    S+   LV     +    + S  L +    +  
Sbjct: 305 --EISLLSLSSSDYPEIERLVNLLTEEFSK--ELVSFSLPSLRADNFSLSLAEKISKVRK 360

Query: 287 LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDD 346
               L   ++SGS+R+ K +N+     ++ + ++       +  I   F++G P ET+DD
Sbjct: 361 --SGLTFAIESGSERLRKVINKGLREEDFLKTLEIAFQKGWN-NIKLYFMLGLPTETNDD 417

Query: 347 FRATMDLV-------DKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLR 399
              T+DLV        K+         + P+  TP        D+ +   R   L K L 
Sbjct: 418 IYQTIDLVYKILKLNKKVKL-HLSFSVFIPKPHTP-FQWERFEDKGIIEARKQVLFKHLN 475

Query: 400 EQQ 402
           +++
Sbjct: 476 KKK 478


>gi|260881517|ref|ZP_05404601.2| putative oxygen-independent coproporphyrinogen III oxidase
           [Mitsuokella multacida DSM 20544]
 gi|260848644|gb|EEX68651.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Mitsuokella multacida DSM 20544]
          Length = 383

 Score = 73.4 bits (179), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 41/212 (19%), Positives = 71/212 (33%), Gaps = 8/212 (3%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGV-CEITLLGQNVNAWRGKGLDGEK 244
           C + C +C  P   G E            R+L   GV               G       
Sbjct: 16  CRQKCFYCDFPSFAGRER-YEADYTDALCRELAVQGVLYREKWGSPRTIYMGGGTPSLLP 74

Query: 245 CTFSD-LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
               + +L +++++ G    R  T      +    K        +  L   VQ+  D +L
Sbjct: 75  TGLLEKILQAIADVFGDAADREFTVECNPGTVDAAKLRALRAGGVNRLSFGVQTFDDTLL 134

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           K + R HT  + R+ +   R+      +S D I G PGE+  D    ++ +  +      
Sbjct: 135 KKIGRIHTGAQAREAMALARAAGFQ-NVSMDLIYGLPGESLADLERDLEAMVALEPEHIS 193

Query: 364 SFKYSPRLGTPGSNMLE----QVDENVKAERL 391
            +      GT  + M E     + +    ER+
Sbjct: 194 IYGLQLEEGTAFAKMQEMGRLALPDEDTVERM 225


>gi|94967905|ref|YP_589953.1| radical SAM family Fe-S protein [Candidatus Koribacter versatilis
           Ellin345]
 gi|94549955|gb|ABF39879.1| Fe-S protein, radical SAM family [Candidatus Koribacter versatilis
           Ellin345]
          Length = 461

 Score = 73.4 bits (179), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 48/280 (17%), Positives = 91/280 (32%), Gaps = 22/280 (7%)

Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVD----GGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
           L R    +++ D D         + +            +G  +F+T   GC   C +C  
Sbjct: 156 LRRTASREQIRDLDAQPWPARNSIDVARYVETWRKAHGQGSVSFIT-ARGCPFKCRWCSH 214

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
                    R+   VVDE   L++    ++  +  +V       +   + +      SL 
Sbjct: 215 QVFGQTHRRRNPKLVVDEVEWLLNAYSPDMVWVADDVFTINHAWI--REYSAEMKRRSL- 271

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
                 R+ +      D  +  +              +  +SGS RIL +M R     + 
Sbjct: 272 ------RIPFECITRADRFNEEMAVLLSELGCFRIW-IGSESGSQRILDAMERGVRVEQV 324

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP- 374
            +  +  R+    I      + G+ GE   D  AT+D V +       +    P  GTP 
Sbjct: 325 HKATELCRT--HGIQSGMFLMWGYEGEEVADIEATIDHVKQSKPDIFLTTLAYPIKGTPY 382

Query: 375 ----GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACV 410
                  ++E       ++R L +  +   +     D  +
Sbjct: 383 YNAVADKLVEVRPWTESSDRELVVAGRRPREYYQHADQLL 422


>gi|78186295|ref|YP_374338.1| Elongator protein 3/MiaB/NifB [Chlorobium luteolum DSM 273]
 gi|78166197|gb|ABB23295.1| Elongator protein 3/MiaB/NifB [Chlorobium luteolum DSM 273]
          Length = 466

 Score = 73.4 bits (179), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 45/311 (14%), Positives = 94/311 (30%), Gaps = 36/311 (11%)

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             L   R  + +         VV+ G       EE        + +V  +       L++
Sbjct: 73  RTLEATRAYEIADTFRAHGKKVVLGGLHISFNPEEAAI---HADSIVVGEADNLWASLID 129

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTA--------FLTIQEGCDKFCTFC 193
               G      D       + +  +D     +              + +  GC   C+FC
Sbjct: 130 DVGNGALKPLYDSKQYPPVKEIVPIDYARISRSSKRGKVDGTKSIPIYVTRGCPFNCSFC 189

Query: 194 VVPYTRGI-EISRSLSQVVDEARKLIDNGVCE--------ITLLGQNVNAWRGKGLDGEK 244
           V P   G    ++    +  +  +                  L  +N+   + K      
Sbjct: 190 VTPNFTGKQYRAQKAESLKSQVEEAKKYFFKASSSSKKPWFMLTDENLGINQKK------ 243

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304
               + L  L E      + ++     +  +        +D    ++   ++S     L+
Sbjct: 244 --LWEALDLLKECD----ITFSVFLSINFLEDPQTVKKLVDAGCNFVLAGLESIKQSTLE 297

Query: 305 SMNRRH--TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           + N+ H  +A +Y +II+  R     + I  +F+     +T +D    +  V+K      
Sbjct: 298 AYNKGHVNSAEKYSKIIEDCRRA--GLNIQGNFLFNPAIDTFEDIDELVRFVEKNHIFMP 355

Query: 363 FSFKYSPRLGT 373
                +P  GT
Sbjct: 356 IFQIITPYPGT 366


>gi|225155466|ref|ZP_03723957.1| radical SAM domain protein [Opitutaceae bacterium TAV2]
 gi|224803767|gb|EEG21999.1| radical SAM domain protein [Opitutaceae bacterium TAV2]
          Length = 490

 Score = 73.1 bits (178), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 43/268 (16%), Positives = 85/268 (31%), Gaps = 18/268 (6%)

Query: 121 SPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAF- 179
            P +   V  +    +PE++   + G                  +      R R      
Sbjct: 109 FPEIPHFVLGEAEMIMPEVIADLQHGALQPVYRAPPFPGLAGTPVPRWDLIRMRDYVTMS 168

Query: 180 LTIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK 238
                GC   C FC +    G    ++S  Q V E   L   G  ++  +  +       
Sbjct: 169 AQFSRGCPFDCEFCDIIVMNGRVPRTKSPEQFVAELEALRQCGWKDMVFVVDD------- 221

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM----SDCLIKAHGDLDVLMPYLHLP 294
              G K     LL+++   +   R +        +       LI     +      + + 
Sbjct: 222 NFIGNKARTRALLHAIIAWRERTRPQMGFLTEASINLADDADLIALM--ITAGFRKVFVG 279

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSV-RPDIAISSDFIVGFPGETDDDFRATMDL 353
           +++ S   L   ++       R ++  ++ + R  + +   FIVGF  +T D F+   D 
Sbjct: 280 IETPSAASLDECHKVQNRG--RDLVASVQVLQRSGLEVMGGFIVGFDSDTRDIFKQQFDF 337

Query: 354 VDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           + + G   A     +    T     L++
Sbjct: 338 IQRSGVVTAMVGLLTALPRTRLYERLKR 365


>gi|167042853|gb|ABZ07570.1| putative Radical SAM superfamily protein [uncultured marine
           microorganism HF4000_ANIW137J11]
          Length = 457

 Score = 73.1 bits (178), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 55/329 (16%), Positives = 101/329 (30%), Gaps = 41/329 (12%)

Query: 45  EDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEK---------VYSFLGRIRNLKNSRI 95
                  G+          +I L TC + E A  +         +++ L     +     
Sbjct: 24  AAFLRRAGFSP-------QVIDLATCELDEAAVREAQLVAISVPMHTALRLAVPVARRIR 76

Query: 96  KEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYS 155
           +      +   G  AQ   E     + + +  +G ++   L  L E    G+        
Sbjct: 77  ELNAAAHICFHGLYAQLNRE--WLLANVADSCLGGESEQALVALCEALARGESAPMPAAP 134

Query: 156 VEDKFERLSIVDGG-------YNRKRGVTAFLTIQE---GCDKFCTFC-VVPYTRGIEIS 204
           +  + +   I DG             G +      E   GC   C  C V P   G    
Sbjct: 135 LLARPDY-PIPDGSGLAGGYAELLDNGHSVQAGFAEATRGCKYTCRHCPVTPVYNGRFFV 193

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
             +  V+ + RK +  G   IT    +        L+G +          +E   L    
Sbjct: 194 VPVENVLQQVRKQVAGGARHITFGDPD-------FLNGPRHALRVAEALHAEFPQLTFDI 246

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
                       L+    +      +L   V+S SD +L+ +++ HT  +  + +   R+
Sbjct: 247 TAKVEHLLDHADLLPQLAECG--CLFLVTAVESLSDHVLEILDKGHTRSDVERALAVTRA 304

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDL 353
               IA+    +   P  T DD+    + 
Sbjct: 305 A--GIAMRPSLVAFTPWTTLDDYLELFEF 331


>gi|310658009|ref|YP_003935730.1| radical sam domain-containing protein [Clostridium sticklandii DSM
           519]
 gi|308824787|emb|CBH20825.1| Radical SAM domain protein [Clostridium sticklandii]
          Length = 453

 Score = 73.1 bits (178), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 49/345 (14%), Positives = 107/345 (31%), Gaps = 46/345 (13%)

Query: 47  MFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVA 106
           +   + +E++   +  D +                + +  I+ +         +    V 
Sbjct: 51  ILEKKPFEQILLEEKPDFV-----GFT-----GYITHVRTIKQMARKVKLYNPNTKTAVG 100

Query: 107 GCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK--------------RVVDT 152
           G  A+  G++ L     ++ +           +LE A   +              +  + 
Sbjct: 101 GVHAEVVGDDFL--DESIDFIFRKNGIDSFNAVLEGAVKNQDKAIIEKRIKAIENQPYNY 158

Query: 153 DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT-RGIEISRSLSQVV 211
            Y   D+    +     Y       A +    GC   C+FC       G   +R +  VV
Sbjct: 159 SYKHPDRKSVENYKKDYYYMFHNPCALIKTSYGCPYNCSFCFCKEITSGKYYARDIEDVV 218

Query: 212 DEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPR 271
            E  ++ +    EI ++  +         +     F  LL      +  +   Y      
Sbjct: 219 AEISQIPE---KEIYIVDDDFLYN-----EDRLKKFIALLK-----ENNIEKNYLVYGRA 265

Query: 272 DMSDCLIKAHGDLDVL-MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330
           D      +   +L  + +  + + ++S     L + N++ T       I+ +R +  DI 
Sbjct: 266 DFIANNKELISELKKVGLRAVIVGIESIRKSDLDNYNKKTTVQINETCIEILREL--DIE 323

Query: 331 ISSDFIVGFPGE-TDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
           + +  I   P +    DFR   + +  +          +P  GT 
Sbjct: 324 LYATLI--LPMDFNKQDFRNLTNWLIDMKITFVNLQPLTPIPGTE 366


>gi|261602281|gb|ACX91884.1| Radical SAM domain protein [Sulfolobus solfataricus 98/2]
          Length = 503

 Score = 73.1 bits (178), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 49/287 (17%), Positives = 100/287 (34%), Gaps = 18/287 (6%)

Query: 88  RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147
           +       K G  +LV           E+++ +   V+ +V  +    + +L +     +
Sbjct: 133 KPEIQEAKKRGMKILVGGPSTWQWLWREDMIEKV-GVDTLVDGEGEKVVVKLAQMILDNE 191

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
            +    Y   D  +   I D    +   V   + I  GC + C FC V           L
Sbjct: 192 PLPKYVYVSGD--DVPDIDDISEIKGASVNGMIEIMRGCARSCRFCSVTI--RPTRYYPL 247

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG---LVRLR 264
            ++  E +  +  GV    +   +V  +   G+         L   + +           
Sbjct: 248 EKIEKELQTNVRAGVRHGVVHSDDVLFYGAVGIYPRPEPLIKLHTLVKKYYKTIAWSHAS 307

Query: 265 YTTSHPRDMSDCLI----KAHGDLDVLMPYLHLPVQSGSDRILKSMN----RRHTAYEYR 316
                  +    LI    +   D +     + + +++GS ++ K +       +   EY 
Sbjct: 308 LAAIRYSEEKYGLISKLGEIIFDDEQRYLGVEVGIETGSVKLAKEIMPAKSAPYKPEEYP 367

Query: 317 QIIDRIRSVRPD--IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
           +I++    +  +  I  +   IVG P ET+DD   T++LVD +   +
Sbjct: 368 EIVEEAFKIMHENKIIPAGTMIVGLPEETEDDVYRTIELVDNLRPYR 414


>gi|302871487|ref|YP_003840123.1| Radical SAM domain protein [Caldicellulosiruptor obsidiansis OB47]
 gi|302574346|gb|ADL42137.1| Radical SAM domain protein [Caldicellulosiruptor obsidiansis OB47]
          Length = 535

 Score = 73.1 bits (178), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 45/289 (15%), Positives = 102/289 (35%), Gaps = 20/289 (6%)

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135
           A          +  L     K    + +++ G        + L     V+ ++  +  Y 
Sbjct: 58  AISTYIWNRSYVEKLVEGLKKAQKSIKIILGGP---EVYFDSLEEWKFVDFIIRGEGEYS 114

Query: 136 LPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
             +L E    G+  +  +Y   D   +L       N  +    +     GC   C++C+ 
Sbjct: 115 FLDLCEHIAAGREYIQKEYPPFD-LSKLPFAYKDENLDQSRIYYYESSRGCPFRCSYCLS 173

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
              +G      L +V +E   L    V  I  + +  NA + + +  +   F       +
Sbjct: 174 SIEKG-VRFAPLEKVFEELDYLFKKQVRLIKFVDRTFNANKERAI--KIIEFCKQKSQAT 230

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
           ++       +    P  + + +I A  +    +  L + +QS + + L +++R +     
Sbjct: 231 QV-------HFEIDPTLLDNDIISAINNSKDNLFRLEIGLQSFNPQTLDAIDRFYDIDRI 283

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD-----LVDKIGY 359
            + + ++   +  I +  D I G P E    F+ ++D       D++  
Sbjct: 284 DKNLKKLMENKKAI-VHLDLIAGLPFEDFLSFKKSLDKTLLYFADEVQL 331


>gi|294783742|ref|ZP_06749066.1| BchE/P-methylase [Fusobacterium sp. 1_1_41FAA]
 gi|294480620|gb|EFG28397.1| BchE/P-methylase [Fusobacterium sp. 1_1_41FAA]
          Length = 440

 Score = 73.1 bits (178), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 63/341 (18%), Positives = 125/341 (36%), Gaps = 42/341 (12%)

Query: 47  MFFSQGYERVN------SMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGD 100
           +   +G E  +      S +  DLI ++   +   +         R + +       G  
Sbjct: 45  VLVDEGVEEYDATSSKYSDEKFDLICIS--AVISAS--------RRAKEISKFWKDRGAY 94

Query: 101 LLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKF 160
             +   G  A    +E L     V  + GP      P  ++    GK   +    V + F
Sbjct: 95  TQI--GGHYATVLSDEALEYFDTV--IKGPAEI-AFPAFIKDFVEGKPKREYFELVGNDF 149

Query: 161 ERLSIVDGGYNRKRGVTAFLTI--QEGCDKFCTFC-VVPYTRGIEISRSLSQVVDEARKL 217
           E   +       K+   +F TI    GC   CT+C V     G    +++  VV E +  
Sbjct: 150 EYKPLNRKLLTNKKYYKSFGTIVANNGCPNKCTYCSVTKMYSGKNQLKNIDFVVSEIK-- 207

Query: 218 IDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCL 277
             N   +      N  A +   ++        L+  L ++K    +++T S   ++ + +
Sbjct: 208 -SNKHKKWVFYDPNFLADKSYAIN--------LMNELKKLK----IKWTASATINIGNDI 254

Query: 278 IKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR-HTAYEYRQIIDRIRSVRPDIAISSDFI 336
                  +     L + ++S     L  +N+  +   EY++++  I+S    I++ S  +
Sbjct: 255 KMLQLMKEAGCIGLVIGLESFIQENLNGVNKGFNNVKEYKRLVSTIQSY--GISVLSTLM 312

Query: 337 VGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
           +G   +T +  R   D++++IG         +P  GTP   
Sbjct: 313 IGMETDTVESIRQIPDIIEEIGVDVPRYNILTPYPGTPFYE 353


>gi|301061566|ref|ZP_07202328.1| radical SAM domain protein [delta proteobacterium NaphS2]
 gi|300444374|gb|EFK08377.1| radical SAM domain protein [delta proteobacterium NaphS2]
          Length = 490

 Score = 73.1 bits (178), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 40/232 (17%), Positives = 90/232 (38%), Gaps = 16/232 (6%)

Query: 153 DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE--ISRSLSQV 210
           D    +K+   +     +  KR     L    GC   CTFC +    G      RSL++V
Sbjct: 191 DLLPMEKYRAHNWHCFDHITKRQPYGILYTSLGCPFNCTFCCINALFGKHMIRYRSLNKV 250

Query: 211 VDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSH 269
           ++E   L+   G+ +I ++ +            EK   S     ++   G     +  + 
Sbjct: 251 IEELEFLVGTYGIKDIKIIDE-------MFALNEKRIVSLCDMIIAR--GFDLNIWAYAR 301

Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329
              +++ ++       +   ++    +SGS R+++ + + +T     ++++   +    +
Sbjct: 302 VNTVTEKMLTKMKQAGI--NWVAYGFESGSRRVIEDVTKGYTVDMVAKVVEM--TYAEGL 357

Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
            I +++I G P +  D    T+ L+  I    A  +      G+   ++  Q
Sbjct: 358 HICANYIFGLPEDDYDSMHETLKLMLDINAEWANIYCTMAYPGSKLYDLAIQ 409


>gi|284173810|ref|ZP_06387779.1| Radical SAM domain protein [Sulfolobus solfataricus 98/2]
          Length = 541

 Score = 73.1 bits (178), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 51/303 (16%), Positives = 98/303 (32%), Gaps = 44/303 (14%)

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSP-IVNVVVGPQTYYRLPELLERARFGKRV 149
           K S++K   +  V+V G  +     E+    P  V+ +   +    LP +++    G+ V
Sbjct: 147 KISKLKSKYNFKVIVGGPGSW----ELANNKPDWVDSIFIGEAEADLPRVIKSLIDGQEV 202

Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC-VVPYTRGIEISRSLS 208
               Y    K   +  +             + I  GC + C FC + P T     +  L 
Sbjct: 203 PKVVYGKNPKVSEIPPIINPARLGE-----VQITRGCPRGCQFCPITPET---FRTIPLD 254

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
            V  E    +  G+  +  +  +V    G               +++++           
Sbjct: 255 VVKKEVEVNMKAGIKRVEFITDDV-LLYGS------QKLRVNHEAITKL--FTETMNMGV 305

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLH--------------LPVQSGSDRILKSMNR----RH 310
                      A       +  +               + ++SGS++IL    R      
Sbjct: 306 DGIWFPHISAPAVRSSPQTVKAMSEIARYDDDRAAAPVVGLESGSEKILNKYMRAKPFPW 365

Query: 311 TAYEYRQIIDRIRSVRPD--IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
           T  E++ +I    ++  D  I       +G+P ET++D   ++DLV  I           
Sbjct: 366 TPREWKNVILDATAIMNDNYIYPCYTMTIGYPEETNEDVDQSIDLVQSI-IDHKLKAWIF 424

Query: 369 PRL 371
           P  
Sbjct: 425 PLP 427


>gi|239909038|ref|YP_002955780.1| short-chain dehydrogenase/reductase SDR family protein
           [Desulfovibrio magneticus RS-1]
 gi|239798905|dbj|BAH77894.1| short-chain dehydrogenase/reductase SDR family protein
           [Desulfovibrio magneticus RS-1]
          Length = 737

 Score = 73.1 bits (178), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 37/228 (16%), Positives = 70/228 (30%), Gaps = 17/228 (7%)

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRG--VTAFLTIQEGCDKFCTFCVVPYTRG-IEISRSL 207
           +TD       +R  I +  Y R       A +    GC   C FC+ P   G     RS 
Sbjct: 180 ETDLDSLPFPDRSLIKNALYVRPDTGEPQATIATSRGCPSACIFCMTPKISGKKLRLRSP 239

Query: 208 SQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
             ++ E      N G+ +                  +      +  ++       ++R+ 
Sbjct: 240 ENILAELTDCYANHGIRDFFFKSDTFTF--------DPAWTQAVCQAILASPLAGKIRWV 291

Query: 267 -TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
             S  + +    +            +    +SGS   L  + +  T ++  Q     +  
Sbjct: 292 ANSKVKPLDKDTLVLMKKAG--CWLVAFGYESGSPETLSRIRKNTTIHDNIQATKWAKEA 349

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
              +     F++G P ET +   AT   + ++           P  GT
Sbjct: 350 --GLLTFGFFLIGLPWETREHLEATRKHIFELDNDFLELHIAIPYYGT 395


>gi|194334907|ref|YP_002016767.1| radical SAM domain-containing protein [Prosthecochloris aestuarii
           DSM 271]
 gi|194312725|gb|ACF47120.1| Radical SAM domain protein [Prosthecochloris aestuarii DSM 271]
          Length = 475

 Score = 73.1 bits (178), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 55/293 (18%), Positives = 100/293 (34%), Gaps = 26/293 (8%)

Query: 123 IVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTI 182
             +V+V  +     P++LE  +  +     +        R   V     +K        I
Sbjct: 132 HADVLVLGEADEIWPDVLEDLKNDQLQQRYESERFPDLFRSRPVQSTVLQKNRYFTTNII 191

Query: 183 Q--EGCDKFCTFCVVPYTRG-IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
           Q   GC   C FC V    G     R ++ +V+E R+   +       +  ++NA     
Sbjct: 192 QTGRGCPFNCDFCNVHILNGNKHRRRRVADIVEEVRRFKSHDNRIFFFVDDSINAS---- 247

Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
                    +L   L  +      + TT         L+K           L + ++S  
Sbjct: 248 ----PEYAEELFRQLIPLNITWFGQATTMLGAQ--PGLLKTFARSG--CVALLVGIESVE 299

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVR-PDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
               K+  +        +++  I+++R   I++   FI G  G+T D   A +D   + G
Sbjct: 300 PASRKAHQKNQNRA--AELVQNIKNIRDAGISLYGSFIYGLDGDTLDTPAAIIDFSRQTG 357

Query: 359 YAQAFSFKYSPRLGTPGSNMLEQVDENVKAE-RLLCLQKKLREQQVSFNDACV 410
                     P  GT       +V E ++AE RLL     +   + +F    +
Sbjct: 358 LDVPGINILRPNPGT-------RVFERLRAEGRLLFNPDDISTYRYTFGQEML 403


>gi|308272367|emb|CBX28972.1| hypothetical protein N47_P16770 [uncultured Desulfobacterium sp.]
          Length = 834

 Score = 73.1 bits (178), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 48/263 (18%), Positives = 100/263 (38%), Gaps = 24/263 (9%)

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
           ++  T  S  ++          Y R       + I  GC + C FC           RSL
Sbjct: 229 KITRTIISDLNEVPFPDKPVTPYARPIHDRLRIEIARGCSRGCRFCQAGMIYRPVRERSL 288

Query: 208 SQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL--R 264
             +++ + K I + G  +++LL  +          G+ C+ S LL  L  +     +   
Sbjct: 289 ENIINISNKSIASTGYEDVSLLSLST---------GDYCSLSSLLERLMAMYESQHIAVS 339

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           + +     ++  L+     +        +  ++GS R+   +N+     +    ++   S
Sbjct: 340 FPSLRAGALTPELVNLVKKVRK--TGFTIAPEAGSQRLRDVINKNINEEDIVHSVNTALS 397

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ--------AFSFKYSPRLGTPGS 376
           +    +I   F++G P ETDDD +  ++LV ++  ++             + P+  TP  
Sbjct: 398 MGWQ-SIKLYFMIGLPTETDDDIKELIELVYRLRKSRIRKSSAINVSVSTFIPKAHTP-F 455

Query: 377 NMLEQVDENVKAERLLCLQKKLR 399
               Q+      E++  ++ KL 
Sbjct: 456 QWYPQISLEESEEKIRLIKNKLN 478


>gi|158320860|ref|YP_001513367.1| radical SAM domain-containing protein [Alkaliphilus oremlandii
           OhILAs]
 gi|158141059|gb|ABW19371.1| Radical SAM domain protein [Alkaliphilus oremlandii OhILAs]
          Length = 598

 Score = 73.1 bits (178), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 44/288 (15%), Positives = 97/288 (33%), Gaps = 25/288 (8%)

Query: 92  NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF------ 145
               K   ++ +V+ G     + E +++ +  +++VV  +      EL+E  +       
Sbjct: 78  KHIKKIMPEVTIVLGGPEVSFDTENLMKENDAIDIVVIGEGEEIFKELIETLKHEGDYSQ 137

Query: 146 ---------GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
                    G+ +             L       +       +     GC   C +C+  
Sbjct: 138 IEGLAFRARGEIIYTDPKKALLDMNTLPFPYENESLDSDKIVYYESSRGCPFNCQYCLSS 197

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256
              G      + +V  E +  I+  V ++  + +  NA +   +D            L  
Sbjct: 198 SIAG-VRFLPIDRVKTEIQYFINQRVKQVKFVDRTFNAKKSYAMDIMNF-------ILEN 249

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
             G     +  +    +   ++     + V +    + VQS ++  L +++R     +  
Sbjct: 250 NNGRTNFHFEVTADL-LDKEMLDFLSKVPVGLFQFEIGVQSTNENTLNAIDRHVDFEKLS 308

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
           +++ +I   R +I    D IVG P E    FR + D V  +   +   
Sbjct: 309 KVVGKISEGR-NIHQHLDLIVGLPEEDYFSFRKSFDDVFALRPEKLQI 355


>gi|189499800|ref|YP_001959270.1| Radical SAM domain-containing protein [Chlorobium phaeobacteroides
           BS1]
 gi|189495241|gb|ACE03789.1| Radical SAM domain protein [Chlorobium phaeobacteroides BS1]
          Length = 472

 Score = 73.1 bits (178), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 52/279 (18%), Positives = 87/279 (31%), Gaps = 27/279 (9%)

Query: 102 LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-----ERARFGKRVVDTDYSV 156
            VV+ G       E         +V+V  +      ++L     +R +   RV +     
Sbjct: 112 KVVLGGPYVTIFPERCR---DHADVLVLGEADEIWSDVLVDLKHDRLQKEYRVGEFPDLS 168

Query: 157 EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG-IEISRSLSQVVDEAR 215
           + +     I+D G      V   +    GC   C FC V    G     R +S VV E  
Sbjct: 169 QSRSVTKDILDPGNYFTTNV---VQTSRGCPYSCDFCNVHVMNGHRIRHRKISDVVREVE 225

Query: 216 KLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSD 275
             ++        L   VNA      +  +  F +L      I   +      +     + 
Sbjct: 226 GFLEKDRRIFFFLDDTVNA----DEEYAEKLFREL------IPYRISWVGQATTKLGENP 275

Query: 276 CLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT-AYEYRQIIDRIRSVRPDIAISSD 334
            L+ A          L + ++S ++   ++ ++ H         I  IR     I +   
Sbjct: 276 RLLDAFSRSG--CGALLVGIESLAEESNRAHHKFHNPVERQAACIRAIREA--GICVYGS 331

Query: 335 FIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
           FI G   +T     A    +D  G          P  GT
Sbjct: 332 FIYGLDADTVAQADAIEAFLDATGIDVPGINLLRPIPGT 370


>gi|261602086|gb|ACX91689.1| Radical SAM domain protein [Sulfolobus solfataricus 98/2]
          Length = 528

 Score = 73.1 bits (178), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 51/303 (16%), Positives = 98/303 (32%), Gaps = 44/303 (14%)

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSP-IVNVVVGPQTYYRLPELLERARFGKRV 149
           K S++K   +  V+V G  +     E+    P  V+ +   +    LP +++    G+ V
Sbjct: 134 KISKLKSKYNFKVIVGGPGSW----ELANNKPDWVDSIFIGEAEADLPRVIKSLIDGQEV 189

Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC-VVPYTRGIEISRSLS 208
               Y    K   +  +             + I  GC + C FC + P T     +  L 
Sbjct: 190 PKVVYGKNPKVSEIPPIINPARLGE-----VQITRGCPRGCQFCPITPET---FRTIPLD 241

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
            V  E    +  G+  +  +  +V    G               +++++           
Sbjct: 242 VVKKEVEVNMKAGIKRVEFITDDV-LLYGS------QKLRVNHEAITKL--FTETMNMGV 292

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLH--------------LPVQSGSDRILKSMNR----RH 310
                      A       +  +               + ++SGS++IL    R      
Sbjct: 293 DGIWFPHISAPAVRSSPQTVKAMSEIARYDDDRAAAPVVGLESGSEKILNKYMRAKPFPW 352

Query: 311 TAYEYRQIIDRIRSVRPD--IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
           T  E++ +I    ++  D  I       +G+P ET++D   ++DLV  I           
Sbjct: 353 TPREWKNVILDATAIMNDNYIYPCYTMTIGYPEETNEDVDQSIDLVQSI-IDHKLKAWIF 411

Query: 369 PRL 371
           P  
Sbjct: 412 PLP 414


>gi|254501929|ref|ZP_05114080.1| magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative
           cyclase [Labrenzia alexandrii DFL-11]
 gi|222438000|gb|EEE44679.1| magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative
           cyclase [Labrenzia alexandrii DFL-11]
          Length = 505

 Score = 73.1 bits (178), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 56/313 (17%), Positives = 108/313 (34%), Gaps = 36/313 (11%)

Query: 98  GGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK---------- 147
               + V+ G  A    +++L  +P V+V+V  +    + EL+      +          
Sbjct: 45  HPHAVRVLGGVHATFMYKQVLSEAPWVDVIVRGEGEEIVIELMRAIDEERWPEDRRTIKG 104

Query: 148 ------------RVVDTDYSVEDKFERLSIVDGGYNRKRGV---TAFLTIQEGCDKFCTF 192
                           T   ++      +I++        +    A      GC   C+F
Sbjct: 105 IAFKEDNQIVATHAAATVKDLDAIEPDWNILEWNKYTYVPLGTRVAIPNFARGCPFTCSF 164

Query: 193 CVVPYTRGIEISRSLSQVVDEARKLI-DNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLL 251
           C           R   +VVDE  KL+ ++ V    L  +     R K ++      +  L
Sbjct: 165 CSQWKFWRDYRVRDPKKVVDEIEKLVTEHNVGFFILADEEPTINRKKFVEFCNELIARGL 224

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
                IK  +  R T          L+  + +  ++  ++ L  ++ +   L   N+   
Sbjct: 225 P--DRIKWGINTRVTDIMR---DKDLLPLYREAGLV--HVSLGTEAAAQLKLDQFNKETK 277

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
             + ++ I  +R    DI + + FIVG   ET++    T  +        A    Y+P  
Sbjct: 278 VNDNKEAIRLLREA--DIFVEAQFIVGLDNETEETLEETYKMAWDWQPDLANWAMYTPWP 335

Query: 372 GTPGS-NMLEQVD 383
            TP    + +QV+
Sbjct: 336 FTPLFQEIRDQVE 348


>gi|206900452|ref|YP_002250957.1| Fe-S oxidoreductases family 2 [Dictyoglomus thermophilum H-6-12]
 gi|206739555|gb|ACI18613.1| Fe-S oxidoreductases family 2 [Dictyoglomus thermophilum H-6-12]
          Length = 597

 Score = 73.1 bits (178), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 49/272 (18%), Positives = 106/272 (38%), Gaps = 23/272 (8%)

Query: 138 ELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197
           + + +    + V D D +       + I    ++R       + I  GC + C FC+  Y
Sbjct: 223 DWVPKIVKRRIVYDLDNAFFPTKPIVPIQQVVHDRGS-----VEIMRGCQRNCRFCLAGY 277

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257
               +  RS+ +V+D  R++I N   E      ++ +         +   + L    S+ 
Sbjct: 278 IYRPKRYRSVEKVIDYTREIIKNTGYE----EISLLSLSSSDYPEIERLVNLLTEEFSK- 332

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
             +V     +    + S  L +    +      L   ++SGS+R+ + +N+     ++ +
Sbjct: 333 -KMVNFSLPSLRADNFSLSLAEKISKVRK--SGLTFAIESGSERLRRVINKGLREEDFLK 389

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV-------DKIGYAQAFSFKYSPR 370
            ++       +  I   F++G P ET++D   T+DL+                   + P+
Sbjct: 390 TLEVAFQKGWN-NIKLYFMLGLPTETNEDIYQTVDLIYKILKLNKSAKL-HLSFSVFIPK 447

Query: 371 LGTPGSNMLEQVDENVKAERLLCLQKKLREQQ 402
             TP     +  +++V  ER   L + L +++
Sbjct: 448 PHTP-FQWEKFEEKSVIEERKQILFRHLNKKR 478


>gi|303247842|ref|ZP_07334110.1| Radical SAM domain protein [Desulfovibrio fructosovorans JJ]
 gi|302490743|gb|EFL50644.1| Radical SAM domain protein [Desulfovibrio fructosovorans JJ]
          Length = 737

 Score = 73.1 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 37/244 (15%), Positives = 77/244 (31%), Gaps = 20/244 (8%)

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRG--VTAFLTIQEGCDKFCTFCVVPYTRG-IEISRSL 207
           +TD       +R  I +  Y R       A +    GC   C FC+ P   G     RS 
Sbjct: 180 ETDLDDLPFPDRSLIRNALYVRPDTGEPQATIATSRGCPSACIFCMTPKISGKKLRLRSP 239

Query: 208 SQVV-DEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
             ++ + +     +G+ +                         +  ++ +     ++R+ 
Sbjct: 240 ENILAELSECYFTHGIRDFFFKSDTFTFDAAWT--------KAVCQAILDSPLSGKIRWV 291

Query: 267 -TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
             S  + +    +            +    +SGS   L  +++  T  +  Q     + V
Sbjct: 292 ANSKVKPLERDTLAIMKKAG--CWLVAFGYESGSPETLTRIHKNTTINDNLQATKWAKEV 349

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ---V 382
              +     F++G P E  +   AT   + ++           P  GT  + +  Q   +
Sbjct: 350 --GLRTFGFFLIGLPWEGPEHLEATRKHIFELDNDFLELHIAIPYYGTRLNEIARQEGLI 407

Query: 383 DENV 386
            + V
Sbjct: 408 PDTV 411


>gi|301057478|ref|ZP_07198574.1| radical SAM domain protein [delta proteobacterium NaphS2]
 gi|300448406|gb|EFK12075.1| radical SAM domain protein [delta proteobacterium NaphS2]
          Length = 562

 Score = 73.1 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 63/365 (17%), Positives = 114/365 (31%), Gaps = 51/365 (13%)

Query: 43  RMEDMFFSQGYERVNSMDDADLIVLN-------TCHIREKAAEKVYSFLGR--------- 86
            +  +   QGY         D+ +LN       +  +     EK    +G          
Sbjct: 29  YVGALLREQGY---------DVEILNWAHLDHISEAVTRVIEEKDPDIIGLSVLQANRWG 79

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
              +  +      ++ V + G  A    +  L     ++  V  +  Y   EL++    G
Sbjct: 80  ALEIAKTAKSIDSEITVALGGIAATFLWKHFLTHFEAIDFCVLGEGEYPFLELVKSIETG 139

Query: 147 KR---------VVDTDYSVEDKFERLSIVDG---GYNRKRGVTAFLTIQEGCDKFCTFCV 194
            R            ++         L I +        K      +    GC   CTFC 
Sbjct: 140 NRKRIRSIKGIAFRSNGRPIKTGRSLPIKNLDNLPIPSKYFDYQHVAFTRGCPAQCTFCG 199

Query: 195 VPYTRGI-EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS 253
            P   G      S +  V +   L + G+                     K    D+   
Sbjct: 200 SPKFWGRRVRFHSATYFVKQLTYLYERGIRFFYFSDDTFLI--------NKERVIDICRE 251

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
           +  I+  +++ +      D+ D  +     L      +   V+SGS+ I   +N+   + 
Sbjct: 252 I--IERDIKISWFAISRVDLVDEEVLRWMRL-AGCTQISYGVESGSEEIRDFLNKNIRSD 308

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
           + ++      + R  I   + FI G PGET    + T+DL+  I    A  +      GT
Sbjct: 309 DIKKAFQL--TTRYGILARAYFIYGSPGETMHTVKETIDLIRDIKPLGAIFYILDIFPGT 366

Query: 374 PGSNM 378
              +M
Sbjct: 367 ILYDM 371


>gi|94270351|ref|ZP_01291719.1| Radical SAM [delta proteobacterium MLMS-1]
 gi|93450837|gb|EAT01868.1| Radical SAM [delta proteobacterium MLMS-1]
          Length = 594

 Score = 73.1 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 51/262 (19%), Positives = 91/262 (34%), Gaps = 44/262 (16%)

Query: 158 DKFERLSIVDGGYNRKRGVTAF------LTIQEGCDKFCTFCVVPYTRGIE-ISRSLSQV 210
           D+   L      +     V AF      LTI  GC   C+FC +   +G E +SRS+  V
Sbjct: 287 DRLYALPYSRRPHPEAGQVPAFRMVRDSLTIVRGCCGNCSFCAIARHQGPEIVSRSVESV 346

Query: 211 VDEARK---LIDNGVCEITLLGQNVNAW-RGKGLDGEKCTFSD----------------- 249
           V EAR+     D       L G   N +  G    G  C   D                 
Sbjct: 347 VAEARRVSGRADFRGTISDLGGPTANLYATGCARPGGPCRRHDCLYPKVCRHLRIDEEKM 406

Query: 250 --LLYSLSEIKGLVRLRYTTSHPRDM---SDCLIKAH--GDLDVLMPYLHLPVQSGSDRI 302
             LL +++E+ G+  L  ++    ++   +  L+K          +    +  +     +
Sbjct: 407 LALLKAVAELPGVKHLFVSSGLRMELLLRTPGLLKEIVGRHTPGTLK---IAPEHTEPGV 463

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSD-----FIVGFPGETDDDFRATMDLVDKI 357
           L+ M++        + ++++R +        +      I   PG T  D       + ++
Sbjct: 464 LRLMHKPG-GELLEKFLEKLRQLPATTRPRGELVNPYLISAHPGCTLPDMEKMAARLRRL 522

Query: 358 GYAQAFSFKYSPRLGTPGSNML 379
           G        ++P  GT  + M 
Sbjct: 523 GLIPRQFQDFTPTPGTLATAMY 544


>gi|194334403|ref|YP_002016263.1| radical SAM domain-containing protein [Prosthecochloris aestuarii
           DSM 271]
 gi|194312221|gb|ACF46616.1| Radical SAM domain protein [Prosthecochloris aestuarii DSM 271]
          Length = 477

 Score = 73.1 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 48/279 (17%), Positives = 85/279 (30%), Gaps = 27/279 (9%)

Query: 102 LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFE 161
            VV+ G       E         +++V  +      ++L     G    D   +V   F 
Sbjct: 113 RVVLGGPYVTVFPERCREHG---DILVRGEADEIWKDVLCDLVDGSLKPDYTAAV---FP 166

Query: 162 RLSIVDGGYNRKRGVTAF-----LTIQEGCDKFCTFCVVPYTRG-IEISRSLSQVVDEAR 215
            LS           ++ +     +    GC   C FC V    G     R +  VV +  
Sbjct: 167 DLSSTGSVKKSALDISNYFTTNVVQTTRGCPYSCDFCNVHVMNGHKLRHRRIGDVVHDVE 226

Query: 216 KLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSD 275
             +         L   VNA        ++     L   L  I   +      +     + 
Sbjct: 227 HFLKEDKRIFFFLDDTVNA--------DEAYAEKLFREL--IPLKISWVGQATTKLGENP 276

Query: 276 CLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT-AYEYRQIIDRIRSVRPDIAISSD 334
            L++A          L + ++S +D   ++ ++ H       + I  IRS    I +   
Sbjct: 277 QLLEAFARSG--CGALLVGIESLADASNRAHHKFHNPIERQAECIGNIRSA--GICVYGS 332

Query: 335 FIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
           FI G   +T  + +     + + G          P  GT
Sbjct: 333 FIYGLDEDTLLEQQTIETFIHETGIDVPGINLLRPIPGT 371


>gi|159042408|ref|YP_001541660.1| radical SAM domain-containing protein [Caldivirga maquilingensis
           IC-167]
 gi|157921243|gb|ABW02670.1| Radical SAM domain protein [Caldivirga maquilingensis IC-167]
          Length = 548

 Score = 73.1 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 68/358 (18%), Positives = 134/358 (37%), Gaps = 45/358 (12%)

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK--- 147
             +       + ++V G  A    +    +   +++V         P L ER   G+   
Sbjct: 147 HPAIKAHRDHIKLLVGGPAAWQLVDTGAWQKLGIDIVYEGSFENYGPMLFERILKGEDIR 206

Query: 148 -RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
            RVV++  S        SI D        +   + +  GC + C FC  P   G+  S  
Sbjct: 207 GRVVNSRPS--------SIEDVPTIVTPSIGGLVEVTRGCGRGCEFC-TPTLNGMISSFP 257

Query: 207 LS-QVVDEARKLIDNG-VCEITLLGQNVNAWRGKGLDGEKCTFSDLL----YSLSEIKGL 260
               +  E    I+ G    ITL  +    +  K +D       DL+      +      
Sbjct: 258 FEGHIDKEIIINIEKGGHKSITLHSEEFFRYGAKSIDPNPDKVKDLVVKAYKLIKRYGDE 317

Query: 261 VRLR--YTTSHPRDMSDCLIKAHGDLDVL---MPYLHLPVQSGSDRILKSMN----RRHT 311
            RL   +TT+     +  L+K  G+         ++ + +++GS R+L  +     +  T
Sbjct: 318 YRLHTDFTTAAVVVQAPDLVKFVGEYMNEGGEWSFIEMGIETGSPRLLNMLMVGKAKPFT 377

Query: 312 AYEYRQIIDRIRSVRPD--IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF--KY 367
             +Y  I+++   +  D    +    I+  PGE D+D  A+++L+D++   +  +F   +
Sbjct: 378 PRQYPDIVEQAVGILNDNRWVVVGTMILNLPGERDEDVAASIELLDRLKKYRILTFPLPF 437

Query: 368 SP------RLGTPGSNMLEQVDENVKAERLLCLQKKLR--EQQVSFNDACVGQIIEVL 417
            P      R  T    M++         R   L+  ++  E+ +   +  VG +  ++
Sbjct: 438 IPMGALRRRDFTILDKMIDDP-----LRREFILKALIKSMEEAIRSVELIVGSMENII 490


>gi|23004060|ref|ZP_00047587.1| COG1032: Fe-S oxidoreductase [Magnetospirillum magnetotacticum
           MS-1]
          Length = 315

 Score = 73.1 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 56/314 (17%), Positives = 97/314 (30%), Gaps = 35/314 (11%)

Query: 99  GDLLVVVAGCVAQAEGEEILRRSPIVNVVV---GPQTYYRLPELLERARFGKRVVDTDYS 155
            D+ +V  G        +IL   P V  +V   G +T  RL   LE  R    +    + 
Sbjct: 14  PDVKIVYGGVFPTYHWRDILEAEPHVTAIVRGEGEETTRRLMSALEAGRPLDAIPGIAFR 73

Query: 156 VEDKFERLSIV-----------------DGGYNRKRGVTAFL-TIQEGCDKFCTFCVVPY 197
                                          Y+   G+ A +     GC   CT+C    
Sbjct: 74  DGSVIRETPPAALIRDLDAYRVGWELIDHTRYSYWGGLRAVVVQFSRGCPHPCTYCGQRG 133

Query: 198 TRGIEISR-SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256
                  R  +    + AR   ++GV  I    +N           +K   + L   ++E
Sbjct: 134 FWTRWRHRDPIRFAAELARLHREHGVRAINFADENPTVS-------KKVWRTFLEALIAE 186

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
              L+ +  T +        ++  +     +     L ++S     L  + +  T    R
Sbjct: 187 NVDLILVGSTRADDIVRDADILPLYRQAGWVR--FLLGLESTDAATLDLIRKGTTTTTDR 244

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
           + I  +R     I   + ++VGF  E D D+   +  +      Q       P   TP  
Sbjct: 245 EAIRLMREN--GILSMATWVVGFEEERDRDYWRGLRQLLAYDPDQIQMLYVKPHRWTPYF 302

Query: 377 NMLEQVDENVKAER 390
            + E+    V   R
Sbjct: 303 RLTEE--RRVIQAR 314


>gi|253698795|ref|YP_003019984.1| radical SAM protein [Geobacter sp. M21]
 gi|251773645|gb|ACT16226.1| Radical SAM domain protein [Geobacter sp. M21]
          Length = 828

 Score = 73.1 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 45/237 (18%), Positives = 94/237 (39%), Gaps = 26/237 (10%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGK 238
           + I  GC + C FC   Y       RS  +V++   + + N G  E++LL  +   +   
Sbjct: 255 VEISRGCTRGCRFCQAGYIYRPVRERSPERVLEIVEETLGNTGYDEVSLLSLSTGDYGCL 314

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
                      L+   +  K  V L   +     +S  + +    +        L  ++G
Sbjct: 315 T-----PLLKGLMDRYAAQKKAVSLP--SMRVGSLSPEMAEEIRRVRK--TGFTLAPEAG 365

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA--ISSDFIVGFPGETDDDFRATMDLVDK 356
           S+R+ + +N+  T      +++  R+V  +    I   F++G P ET +D    +++  +
Sbjct: 366 SERLRRVINKGITEE---ALLENARAVYSNGWRLIKLYFMIGLPTETMEDLDRIVEISRE 422

Query: 357 I----GYA------QAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQV 403
           +     +A            + P+  TP      Q+ E    E+   L+ +LR++++
Sbjct: 423 VKRQGKFAGNGGDVNVSVSSFVPKPHTP-FQWEPQITEEEIVEKQRHLRGELRKKKL 478


>gi|220919111|ref|YP_002494415.1| Radical SAM domain protein [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219956965|gb|ACL67349.1| Radical SAM domain protein [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 573

 Score = 73.1 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 63/267 (23%), Positives = 104/267 (38%), Gaps = 31/267 (11%)

Query: 162 RLSIVDGGYNRKRGV-TAFLTIQEGCDKFCTFCVVPYTRG-----IEISRSLSQVVDEAR 215
              +        RGV  A L    GC   C+FC V    G        +RS   V DE +
Sbjct: 163 PFPVRRRETLAARGVGIASLVASRGCYYDCSFCSVQTFYGEPPGPRRRTRSPGNVADEMQ 222

Query: 216 KLID-NGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPR--D 272
            L D  GV        ++ A RG    G    F+  L    E++ L R        R  D
Sbjct: 223 ALHDGKGVRVFIFKDDDL-ATRGPRARGWIEAFAREL----EVRRLGRRIAWRISCRVDD 277

Query: 273 MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAIS 332
           +   L++      V + +++L ++SGS++ L++ N+R T    R+ +  +R +R  +A  
Sbjct: 278 LDADLLRRLR--GVGLTWVYLGIESGSEQGLRTCNKRFTVDAVRRGVALLRRLR--LAFD 333

Query: 333 SDFIVGFPGETDDDFRATMDLVDKIGY---AQAFSFKYSPRLGTP-GSNML--------E 380
             F++  P  T    R ++  ++ +G    A     K  P +GT   + +         +
Sbjct: 334 YGFMLLDPDSTFASVRESVGFLEDLGRRGDASVHFTKMFPYVGTAIAARLAAEGRLAGTD 393

Query: 381 QVDE-NVKAERLLCLQKKLREQQVSFN 406
              +   +  RL  LQ  L E     N
Sbjct: 394 AAPDYAFRDPRLDLLQGFLSEAFHERN 420


>gi|86749804|ref|YP_486300.1| magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative
           cyclase [Rhodopseudomonas palustris HaA2]
 gi|86572832|gb|ABD07389.1| Magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative
           cyclase [Rhodopseudomonas palustris HaA2]
          Length = 508

 Score = 73.1 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 56/310 (18%), Positives = 96/310 (30%), Gaps = 33/310 (10%)

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVV---GPQTYYRLPELLERA 143
           I  +  +         +V  G        EIL   P V  +V   G +T  RL   L   
Sbjct: 82  IAEVAQAIAHAIPGTRIVYGGVFPTYHWREILDAEPYVTAIVRGEGEETARRLMTALADG 141

Query: 144 ------------RFGKRVVDTDYSVEDKFERLSIVDGGYNRKR-----GVTAFL-TIQEG 185
                       R G+        V    +   I     +  R     G+ A +     G
Sbjct: 142 DDLAGVHGIAYRRAGQACATPPAVVIGDLDAYRIGWELIDHARYSYWGGLRAVVVQFSRG 201

Query: 186 CDKFCTFCVVPYTRGIEISR-SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK 244
           C   C++C           R  +    + AR   + GV  +    +N    +        
Sbjct: 202 CPHLCSYCGQRGFWTRWRHRDPVLFAKELARLHREQGVRVVNFADENPTVSKKVWQ---- 257

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304
            TF + L  ++E   L+ +  T +        ++  +           L +++  D  L 
Sbjct: 258 -TFLEAL--IAEEVDLILVGSTRADDIVRDANILHLYKQAG--WDRFLLGLENTDDATLA 312

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
            + +       R+ I  +R  R  I   + ++VGF  ETD D    +  +      Q   
Sbjct: 313 LIRKGAATPTDREAIRLLR--RHGILSMATWVVGFVEETDRDHWRGLRQLLSYDPDQIQM 370

Query: 365 FKYSPRLGTP 374
              +P   TP
Sbjct: 371 LYATPHRWTP 380


>gi|86160299|ref|YP_467084.1| radical SAM family protein [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85776810|gb|ABC83647.1| radical SAM [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 577

 Score = 73.1 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 56/250 (22%), Positives = 99/250 (39%), Gaps = 28/250 (11%)

Query: 177 TAFLTIQEGCDKFCTFCVVPYTRG-----IEISRSLSQVVDEARKLIDNGVCEITLLGQN 231
            A L    GC   C+FC V    G        +RS   V DE + L +     + +   +
Sbjct: 179 IASLAASRGCHYDCSFCSVQTFYGEPPGPRRRTRSPGNVADEMQVLHEAKGVRVFIFKDD 238

Query: 232 VNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPR--DMSDCLIKAHGDLDVLMP 289
             A RG         F+  L +    +GL R        R  D+   L++      V + 
Sbjct: 239 DLATRGPRARAWIEAFARELEA----RGLGRRIAWRISCRVDDLDADLLRRLR--GVGLT 292

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +++L ++SGS++ L++ N+R T  + R+ +  +R +R  +A    F++  P  T    R 
Sbjct: 293 WVYLGIESGSEQGLRTCNKRFTVDDVRRGVALLRRLR--LAFDYGFMLLDPDSTFASVRE 350

Query: 350 TMDLVDKIGY---AQAFSFKYSPRLGTP-GSNML--------EQVDE-NVKAERLLCLQK 396
           ++  ++ +G    A     K  P +GT   + +         +   +   +  RL  LQ 
Sbjct: 351 SVGFLEDLGRRGDASVHFTKMFPYVGTAIAARLAAEGRLAGTDAAPDYAFRDPRLDLLQG 410

Query: 397 KLREQQVSFN 406
            L E     N
Sbjct: 411 FLSEAFHERN 420


>gi|197124374|ref|YP_002136325.1| radical SAM protein [Anaeromyxobacter sp. K]
 gi|196174223|gb|ACG75196.1| Radical SAM domain protein [Anaeromyxobacter sp. K]
          Length = 572

 Score = 73.1 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 70/330 (21%), Positives = 120/330 (36%), Gaps = 44/330 (13%)

Query: 114 GEEILRRSPIVNVVVGPQTYYRLPELLERAR------------FGKRVVDTDYSVEDKFE 161
            E  L   P ++ VV  +    L EL+                F +R V           
Sbjct: 98  WERTLALVPGLDTVVRHEGELTLLELVRALDQPARWREIPGLAFRQRGVPVATPARPLVP 157

Query: 162 RLSIVDGGYNRKRGV------TAFLTIQEGCDKFCTFCVVPYTRG-----IEISRSLSQV 210
            L  +     R+  +       A L    GC   C+FC V    G        +RS + V
Sbjct: 158 ELDALPFPVRRRETLAARGVGIASLVASRGCYYDCSFCSVQTFYGEPPGPRRRTRSPANV 217

Query: 211 VDEARKLID-NGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSH 269
            DE + L D  GV        ++ A RG    G    F+  L   +   G       +  
Sbjct: 218 ADEMQALHDGKGVRVFIFKDDDL-ATRGPRARGWIEAFAHELE--ARRLGRRIAWRISCR 274

Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329
             D+   L++      V + +++L ++SGS++ L++ N+R T  + R+ +  +R +R  +
Sbjct: 275 VDDLDADLLRRLR--GVGLTWVYLGIESGSEQGLRTCNKRFTVGDVRRGVALLRRLR--L 330

Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGY---AQAFSFKYSPRLGTP-GSNML------ 379
           A    F++  P  T    R ++  ++ +G    A     K  P +GT   + +       
Sbjct: 331 AFDYGFMLLDPDSTFASVRESVGFLEDLGRRGDASVHFTKMFPYVGTAIAARLAAEGRLA 390

Query: 380 --EQVDE-NVKAERLLCLQKKLREQQVSFN 406
             +   +   +  RL  LQ  L E     N
Sbjct: 391 GTDAAPDYAFRDPRLDLLQGFLSEAFHERN 420


>gi|118579179|ref|YP_900429.1| radical SAM domain-containing protein [Pelobacter propionicus DSM
           2379]
 gi|118501889|gb|ABK98371.1| Radical SAM domain protein [Pelobacter propionicus DSM 2379]
          Length = 623

 Score = 73.1 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 33/200 (16%), Positives = 65/200 (32%), Gaps = 14/200 (7%)

Query: 181 TIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL 240
            +  GC   C FC            SL +V  E R      V ++ +L    N   G+  
Sbjct: 187 QLSRGCAFSCDFCYDARGESGVRRFSLERVEAELRYFAAAEVSQVFVLDSTFNQDVGRA- 245

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300
                    +L  + +I       +       +   + +       +   L + +QS   
Sbjct: 246 -------KAILRLIRKIAPRTHFHFEV-RCEFLDGEMARLFAG---ITCSLQIGLQSADP 294

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
           R+L+ + R      +   +  +   R       D + G PG++ + FR ++D    +   
Sbjct: 295 RVLRQVGRSFRRDAFAAKVALL--NRSGAVFGFDLMYGLPGDSLEGFRESVDYALSLYPN 352

Query: 361 QAFSFKYSPRLGTPGSNMLE 380
               F  +   GT  +   +
Sbjct: 353 HLDIFPLAILPGTALAARAD 372


>gi|312877354|ref|ZP_07737319.1| Radical SAM domain protein [Caldicellulosiruptor lactoaceticus 6A]
 gi|311795828|gb|EFR12192.1| Radical SAM domain protein [Caldicellulosiruptor lactoaceticus 6A]
          Length = 535

 Score = 73.1 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 46/289 (15%), Positives = 104/289 (35%), Gaps = 20/289 (6%)

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135
           A          +  L     K   D+ +++ G        + L     V++++  +  Y 
Sbjct: 58  AISTYIWNRSYVEKLVEGLKKARKDIKIILGGP---EVYFDSLEEWKFVDLIIRGEGEYP 114

Query: 136 LPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
             +L E    GK+ +  +Y   D   +L       +       +     GC   C++C+ 
Sbjct: 115 FLDLCEHIATGKQYIQKEYPPFD-LSKLPFAYKDESLDTSRIYYYESSRGCPFRCSYCLS 173

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
              +G      L +V +E   L    V  I  + +  NA + + +  +   F       +
Sbjct: 174 SIEKG-VRFAPLEKVFEELDYLFKKEVRLIKFVDRTFNANKERSI--KIIEFCKQKSQAT 230

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
           ++       +    P  + + +I A  +    +  L + +QS + + L ++NR +     
Sbjct: 231 QV-------HFEIDPTLLDNDVISAINNSKDNLFRLEIGLQSFNPQTLDAINRFYDIDRI 283

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD-----LVDKIGY 359
            + + ++   +  I +  D I G P E    F+ +++       D++  
Sbjct: 284 DKNLKKLMENKKAI-VHLDLIAGLPYEDFLSFKRSLNKTILYFADEVQL 331


>gi|298530186|ref|ZP_07017588.1| Radical SAM domain protein [Desulfonatronospira thiodismutans
           ASO3-1]
 gi|298509560|gb|EFI33464.1| Radical SAM domain protein [Desulfonatronospira thiodismutans
           ASO3-1]
          Length = 455

 Score = 72.7 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 65/319 (20%), Positives = 113/319 (35%), Gaps = 31/319 (9%)

Query: 78  EKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYY--R 135
           ++   FL + R + +S ++E     +VV G       E IL        V G       +
Sbjct: 78  DQSRWFLEQTRRIIDS-LREITRAPIVVGGPAFSIMPEAILEYLGADFGVEGEGEAAVVK 136

Query: 136 LPELLERARFGKRVVDTDYSVEDKFERLSIVDG---GYNRKRGVTAFLTIQEGCDKFCTF 192
           L E ++    G R+V +   +        +VD     Y  K      L  + GC   C +
Sbjct: 137 LLERIQNNGHGPRIVRSKEVLHKSQLCSPLVDKDILEYYNKESGLPGLQTKRGCPHSCVY 196

Query: 193 CVVPYTRGI-EISRSLSQVVDEA-RKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDL 250
           C  P   G    +R   +VV++  +   D+GV  I       N  RG         + +L
Sbjct: 197 CSYPSLEGPFLRARHPEEVVEDVAKLSRDHGVEHIFFTDSVFNDCRGH--------YLEL 248

Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI----LKSM 306
             +L+      R               I+      + +    L ++ GSD      L+ +
Sbjct: 249 ALALA------RRNLPVRWSAFFRPDPIRDDDLDLL-LHSGLLGMEVGSDSCAEPTLEGL 301

Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
            +   + +  +       VR  I ++  FI+G P ET+   R T+  + K       +F 
Sbjct: 302 GKGFCSSDVLRFNAAC--VRRGIPVAHYFIIGGPNETEATIRETLSNIGK--LEDCVAFV 357

Query: 367 YSPRLGTPGSNMLEQVDEN 385
           YS     PG+ +     + 
Sbjct: 358 YSGLRILPGTKLHAHAIKE 376


>gi|116749045|ref|YP_845732.1| radical SAM domain-containing protein [Syntrophobacter fumaroxidans
           MPOB]
 gi|116698109|gb|ABK17297.1| Radical SAM domain protein [Syntrophobacter fumaroxidans MPOB]
          Length = 849

 Score = 72.7 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 47/232 (20%), Positives = 89/232 (38%), Gaps = 24/232 (10%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGK 238
           + I  GC + C FC   +       R    V+ +A   + N G  E++LL  +       
Sbjct: 259 VEIARGCTRGCRFCQAGFIYRPVRERDPRVVLSKAETALANSGFEEMSLLSLST------ 312

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD--MSDCLIKAHGDLDVLMPYLHLPVQ 296
              G+ C    LL +L E     R+  +    R   ++  L++    +        L  +
Sbjct: 313 ---GDYCRIQPLLAALMERCAPERIAVSLPSMRVGTLTPQLMELIRKVRK--TGFTLAPE 367

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
           +GS+R+ + +N+     +     +    +   + +   F+ G P ETDDD    +DL +K
Sbjct: 368 AGSERLRRVINKGVRDEDLLDAAENAYGLGWRL-LKLYFMTGLPTETDDDLECLVDLCEK 426

Query: 357 IGY--------AQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLRE 400
           +                 + P+  TP    + Q+       RL   +++LR+
Sbjct: 427 VWRLGKTSRSSVNVSISTFVPKPQTP-FQWVPQLSRPEMERRLGLFKERLRK 477


>gi|197119751|ref|YP_002140178.1| cobalamin-binding radical SAM domain-containing iron-sulfur
           cluster-binding oxidoreductase [Geobacter bemidjiensis
           Bem]
 gi|197089111|gb|ACH40382.1| cobalamin-binding radical SAM domain iron-sulfur cluster-binding
           oxidoreductase [Geobacter bemidjiensis Bem]
          Length = 557

 Score = 72.7 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 48/291 (16%), Positives = 103/291 (35%), Gaps = 27/291 (9%)

Query: 99  GDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG------------ 146
               +V+ G        E++ R+  ++ +V  +      ELL+    G            
Sbjct: 84  PGTFIVLGGPEVSYGSFEMMGRNAAIDCIVRGEGEETCRELLQALAGGVPLDDIPGITYR 143

Query: 147 ---KRVVDTDYSVEDKFERLS-IVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
              + V + +     K + +      G         +     GC   C FC+     G  
Sbjct: 144 DHDEVVANPERGAITKLDSIPSPFAAGLVDLDKPLVYYETSRGCPFSCAFCMSSLENG-V 202

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            S S+ ++  + R L+D GV  + L  +  N       D ++      ++ L   +    
Sbjct: 203 RSFSMERIEADLRLLMDRGVKTVKLADRTFN------FDTQRAN---AIWRLILTENKSS 253

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
             +       +++  +    ++   M    + VQSG ++ L  + R+ +  +  Q +  +
Sbjct: 254 KFHFEIAAELLTEENLALLAEVPAGMFRFEIGVQSGGEKTLAKVQRKSSLDKLYQNVRAV 313

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
              R  + +  D + G PGE+ + F A++  + ++G             GT
Sbjct: 314 IE-RTKVTVHLDLVAGLPGESLEGFLASLQGLFELGGNHIQVEPLKVLKGT 363


>gi|302346343|ref|YP_003814641.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Prevotella melaninogenica ATCC 25845]
 gi|302150472|gb|ADK96733.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Prevotella melaninogenica ATCC 25845]
          Length = 415

 Score = 72.7 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 49/257 (19%), Positives = 94/257 (36%), Gaps = 42/257 (16%)

Query: 186 CDKFCTFC----VVPYTRGIEI-S---RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG 237
           C   C +C     VP  +  E  S   R ++ +  E     +         G+ +     
Sbjct: 11  CASRCIYCGFYSTVPAKKKDERLSVEERYVNAICHEMELRAEKNSDN---SGERIGGLST 67

Query: 238 KGLDGEKCT---FSDLLYSLSEIKGLVRLRYTT------------------SHPRDMSDC 276
             L G   +   F  L      I  +  +                       +P D+++ 
Sbjct: 68  IYLGGGTPSQLSFESLQKIFQTIDNVYHIGLEWDTENNTCTTATHIEITMECNPDDITEE 127

Query: 277 LIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI-AISSDF 335
             +    L +    + +  Q+ SD  L+ ++RRHTA E    + R+RSV  +I  IS D 
Sbjct: 128 FAQNLRSLPI--NRISMGAQTFSDERLRFLHRRHTADEVEAAVKRLRSV--NIKNISVDL 183

Query: 336 IVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML-----EQVDENVKAER 390
           + GFP ET ++++  ++ +  +      ++      GTP   +L     + +D+ +  + 
Sbjct: 184 MFGFPNETLEEWKEDIERLLALDIEHISAYSLMYEEGTPLYRLLQAGKVKDMDDELYRQM 243

Query: 391 LLCLQKKLREQQVSFND 407
              L  +L E      +
Sbjct: 244 YDTLIDRLAEAGYEQYE 260


>gi|39995357|ref|NP_951308.1| radical SAM domain-containing protein [Geobacter sulfurreducens
           PCA]
 gi|39982119|gb|AAR33581.1| radical SAM domain protein [Geobacter sulfurreducens PCA]
          Length = 487

 Score = 72.7 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 36/197 (18%), Positives = 71/197 (36%), Gaps = 19/197 (9%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK 238
           +    GC   C+FC V    G     RS++ VV++     D+       +  ++      
Sbjct: 193 VETARGCPHRCSFCSVWQLYGRSCRERSIAAVVEDFATAGDS-----IFVADDLFWH--- 244

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHL--PVQ 296
                     +L  +L + +G+ +         D+             L     +   ++
Sbjct: 245 ----NPARSLELAEALKK-RGVFKRWILVQTRTDLICRSADLMAAWRPLAKDFDIFLGLE 299

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
           + +D+ L  + +     E  + +   R +R  I    +F++  P   +DDFR   D V +
Sbjct: 300 AATDKGLAGITKDSGVAESVEAVRLARELRYGIN--GNFLID-PDWGEDDFRDLWDFVAR 356

Query: 357 IGYAQAFSFKYSPRLGT 373
            G  +A     +P  GT
Sbjct: 357 YGLQRAGFTILTPLSGT 373


>gi|197116946|ref|YP_002137373.1| radical SAM domain iron-sulfur cluster-binding oxidoreductase
           [Geobacter bemidjiensis Bem]
 gi|197086306|gb|ACH37577.1| radical SAM domain iron-sulfur cluster-binding oxidoreductase
           [Geobacter bemidjiensis Bem]
          Length = 557

 Score = 72.7 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 38/182 (20%), Positives = 68/182 (37%), Gaps = 17/182 (9%)

Query: 178 AFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG 237
             + +  GC + C FC   +      SRSL  V +E  K +  G     L+   V+ + G
Sbjct: 247 HLVELSRGCPRACRFCAAGFIYLPYRSRSLEGVREEVLKGVAQGRKVG-LVAAAVSDYTG 305

Query: 238 KGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQS 297
            G         +L   +    G      ++     +   +I+A          + L  + 
Sbjct: 306 IG---------ELCGEIVAAGGKFS--VSSFRIDHLDAGMIEALKASGQ--KSVALAPEG 352

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI-AISSDFIVGFPGETDDDFRATMDLVDK 356
           GS R+   + +     +     D++  +  DI  +   FI+G P ET+ D    + LV +
Sbjct: 353 GSQRLRDLVKKGIDEEQILAACDKL--ISHDILNLKLYFIIGLPTETEKDLEELVLLVTR 410

Query: 357 IG 358
           I 
Sbjct: 411 IR 412


>gi|297569111|ref|YP_003690455.1| Radical SAM domain protein [Desulfurivibrio alkaliphilus AHT2]
 gi|296925026|gb|ADH85836.1| Radical SAM domain protein [Desulfurivibrio alkaliphilus AHT2]
          Length = 431

 Score = 72.7 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 56/315 (17%), Positives = 101/315 (32%), Gaps = 47/315 (14%)

Query: 92  NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVD 151
               K  G   VVV G  A  +          ++ +          EL+E    G++  D
Sbjct: 88  AGEFKAAGVKNVVVGGIHASNDPA--FFNHEEIDYICIGLGKLSFRELVEALEQGRQPAD 145

Query: 152 T-----------------DYSVEDKFERLSIV---------DGGYNRKRGVTAFLTIQEG 185
                             DY  +D                      R +    F+    G
Sbjct: 146 IPGIAKTSPGGQLQWLERDYREDDLVSHRPPAYQLVASYRDHYRLERLKVTMGFVVSAAG 205

Query: 186 CDKFCTFCVVPYTR-GIEISRSLSQVVDEARKLIDNGVCEITLLGQNV--NAWRGKGLDG 242
           C   C+FC +     G  ++R   +V+ +   L D  +  I L+  N   N  + + L  
Sbjct: 206 CPHRCSFCCIKGQCGGRYLTRPEQEVIRDIELLAD--IPVIRLIDANTFGNPEQARRLGE 263

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
                      L++++         S        L++   +    +  + +  +   DR 
Sbjct: 264 AIRAARLNKQFLADVR---------SDTVVNHPELMQLWREAG--LRAVIIGFEELDDRR 312

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           L +MN+ + A   R+ +  ++ +   I I  DFIV  PG  ++DF+   D +        
Sbjct: 313 LTAMNKANRAAINREAVGVLQEL--GITIVGDFIVS-PGYHEEDFQRLSDYLAASRIDLP 369

Query: 363 FSFKYSPRLGTPGSN 377
                +P  GT    
Sbjct: 370 IITVLTPLPGTAYHR 384


>gi|325266197|ref|ZP_08132881.1| lipoic acid synthetase [Kingella denitrificans ATCC 33394]
 gi|324982427|gb|EGC18055.1| lipoic acid synthetase [Kingella denitrificans ATCC 33394]
          Length = 347

 Score = 72.7 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 39/208 (18%), Positives = 72/208 (34%), Gaps = 12/208 (5%)

Query: 161 ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN 220
           E  S  + G     G   F+ + + C + C FC V + R  E+     +  + A  +   
Sbjct: 87  EEASCPNIGECFSHGTATFMIMGDICTRRCPFCDVGHGRPNEL--DKDEPKNLAESVAAM 144

Query: 221 GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKA 280
            +  + +   +    R    DG    F+D +  + +     ++       R   D  +  
Sbjct: 145 KLKYVVITSVD----RDDLRDGGAQHFADCINEIRKTSPNTKIEILVPDFRGRLDIALDI 200

Query: 281 HGDLDV-LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGF 339
                  +M +          R+ K            +++ R R + P I   S  +VG 
Sbjct: 201 LAKNPPDVMNHNLETH----PRLYKQARPGADYKHSLELLRRYREMMPHIPTKSGIMVGL 256

Query: 340 PGETDDDFRATMDLVDKIGYAQAFSFKY 367
            GETDD+ R  M  + + G       +Y
Sbjct: 257 -GETDDEVREIMRDMREHGIEMITVGQY 283


>gi|294647163|ref|ZP_06724762.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Bacteroides ovatus SD CC 2a]
 gi|294809226|ref|ZP_06767942.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Bacteroides xylanisolvens SD CC 1b]
 gi|292637450|gb|EFF55869.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Bacteroides ovatus SD CC 2a]
 gi|294443620|gb|EFG12371.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Bacteroides xylanisolvens SD CC 1b]
          Length = 376

 Score = 72.7 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 53/233 (22%), Positives = 85/233 (36%), Gaps = 20/233 (8%)

Query: 186 CDKFCTFCVV-PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR---GKGLD 241
           C   C +C     TR    +R +  +  E     +       L G+++       G    
Sbjct: 11  CKTRCIYCDFYSTTRSELKTRYVQTLCRELAMRKE------YLKGEDIETIYFGGGTPSQ 64

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPR--DMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
            EK  F  +  ++ +  GL   +  T      D+S   +     L      L + +Q+  
Sbjct: 65  LEKEDFEQIFDTIRKHYGLNHCQEITLEANPDDLSQEYLGMLSSLP--FNRLSMGIQTFD 122

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
           D  LK + RRH A    + IDR R       IS D I G PGET + +   +     +  
Sbjct: 123 DATLKLLRRRHNARTAIEAIDRCRKAGFQ-NISIDLIYGLPGETKERWENDLRQAISLNV 181

Query: 360 AQAFSFKYSPRLGTPGSNMLEQ-----VDENVKAERLLCLQKKLREQQVSFND 407
               ++       TP  NML+Q     VDE+   E    L + L++      +
Sbjct: 182 EHISAYHLIYEEDTPIYNMLKQHQISEVDEDSSLEFFTLLIEHLQKAGFEHYE 234


>gi|121535190|ref|ZP_01667005.1| Radical SAM domain protein [Thermosinus carboxydivorans Nor1]
 gi|121306181|gb|EAX47108.1| Radical SAM domain protein [Thermosinus carboxydivorans Nor1]
          Length = 636

 Score = 72.7 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 49/270 (18%), Positives = 92/270 (34%), Gaps = 28/270 (10%)

Query: 95  IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDY 154
            K   D  +V+ G     +  E++     V+ +V  +    L  LL   + G+ V   + 
Sbjct: 136 KKVLPDTAIVLGGPEVSYDPAEVMAGHAAVDYIVQGEGEETLYRLLSSLQSGRDVETIEG 195

Query: 155 SV------------EDKFERLSIVDGGYNRKRGVTAFLTI-----QEGCDKFCTFCVVPY 197
                               LS +   Y+ +        I       GC   C +C+   
Sbjct: 196 LAFRRGGRVVINGGPQIVHDLSCIPFPYSDEDMAQLADKIIYYESSRGCPFSCQYCLSSA 255

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257
           T G      L +V  +    I + V ++  + +  NA        +K  +  L   L+  
Sbjct: 256 TTG-VRFLPLERVYRDMEFFIRHDVKQVKFVDRTFNA--------KKEHYFPLWQFLARQ 306

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
                  +  +    + D ++     +        + VQS  +  L  + RR+      +
Sbjct: 307 NCRTNFHFEIAADI-LDDEVLAFLAQVPPGRFQFEIGVQSTYEPTLAEIKRRNDWSRIAR 365

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDF 347
            + ++RS   +I +  D IVG P ET + F
Sbjct: 366 NVLKLRSY-DNIHLHLDLIVGLPYETYERF 394


>gi|126465118|ref|YP_001040227.1| radical SAM domain-containing protein [Staphylothermus marinus F1]
 gi|126013941|gb|ABN69319.1| Radical SAM domain protein [Staphylothermus marinus F1]
          Length = 516

 Score = 72.7 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 66/365 (18%), Positives = 131/365 (35%), Gaps = 41/365 (11%)

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK----FCTFCVVP 196
           E+A   K   + + + +       I+    N    +   +    GC +     C+FC  P
Sbjct: 154 EKAEPWKLRENYELANKAFILGAKIIKQHPNYGWNLIVEIETFRGCPRWVVGGCSFCTEP 213

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQ-NVNAWRGKGLDGEKCTFSDLLYSLS 255
                 + R+   +V E  +L   G     +  Q ++ A+ GKG+ GEK      + +L 
Sbjct: 214 RYGRPLM-RNPENIVKEIEQLYRFGARHFRIGRQPDILAYMGKGV-GEKEYPEPNIEALE 271

Query: 256 EI--------KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY------LHLPVQSGSDR 301
           ++         GL  L     +P  +     K+   L  ++ Y        L ++S  ++
Sbjct: 272 KLFHGIRNVAPGLRVLHIDNVNPGTIIHNPEKSIKALKTIVKYHTPGDVAALGIESFDEK 331

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSV--------RPDIAISSDFIVGFPGETDDDFRATMDL 353
           +++  N +    E   +I  I  +         P +    + + G PGET + FR   + 
Sbjct: 332 VVRMNNLKVYPEEALVVIKIINEIGRHRGWNGLPHLLPGVNLLYGLPGETKNTFRINYEY 391

Query: 354 VDKIG-----YAQAFSFKYSPRLGTPGSNMLEQVDENVKA-ERLLCL--QKKLREQQVSF 405
           + KI        +    K S    TP     + V++ ++  +R+  +   K + E   + 
Sbjct: 392 LKKIYEEGLLIRRINIRKVSVLENTPLWMHKKTVEQLLRKHKRIYNIYRIKIMNEIDRAM 451

Query: 406 NDAC--VGQIIEVLIEKHGKEKGKLVGRSP-WLQSVVLNSKNHNIGDIIKVRITDVKIST 462
                 +  I+  L  +  +     + R P     +V       +  II VR+  V   +
Sbjct: 452 LQKIAPINSILRYLYTEK-QVGEYTIARQPASYPIIVKIPGKLPLRKIIDVRVKKVAAKS 510

Query: 463 LYGEL 467
           +    
Sbjct: 511 IIATP 515


>gi|317475602|ref|ZP_07934863.1| radical SAM superfamily protein [Bacteroides eggerthii 1_2_48FAA]
 gi|316908172|gb|EFV29865.1| radical SAM superfamily protein [Bacteroides eggerthii 1_2_48FAA]
          Length = 377

 Score = 72.7 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 47/233 (20%), Positives = 84/233 (36%), Gaps = 20/233 (8%)

Query: 186 CDKFCTFCVV-PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR---GKGLD 241
           C   C +C     TR    SR +  +  E +   +       L G+ V       G    
Sbjct: 11  CKTRCIYCDFYSTTRSELKSRYIHALCKELQMRKE------YLRGEPVETVYFGGGTPSQ 64

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPR--DMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
             +  F ++  ++ +  G+   R  T      D+++        L      + + +Q+  
Sbjct: 65  LAEEDFREVFETIRKYYGMEHCREITLEANPDDLTEEYTAMLQQLP--FNRISMGIQTFD 122

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
           D  LK +NRRH A +  + +   R    +  IS D I G PGETD+ ++  +     +G 
Sbjct: 123 DATLKLLNRRHDAEQAVKAVHHCRRAGFN-NISIDLIYGLPGETDERWKRDLQQAVSLGV 181

Query: 360 AQAFSFKYSPRLGTPGSNMLE-----QVDENVKAERLLCLQKKLREQQVSFND 407
               ++  +   GT    +L+     +VDE         L   L        +
Sbjct: 182 EHISAYHLTYEEGTRIYELLQAHRIHEVDEESSVRFFSTLMDTLDNAGYEHYE 234


>gi|312137320|ref|YP_004004657.1| radical sam domain protein [Methanothermus fervidus DSM 2088]
 gi|311225039|gb|ADP77895.1| Radical SAM domain protein [Methanothermus fervidus DSM 2088]
          Length = 522

 Score = 72.7 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 50/340 (14%), Positives = 118/340 (34%), Gaps = 35/340 (10%)

Query: 96  KEGGDLLVVVAGCVA-QAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDY 154
           ++  D  +VV G  A Q + +E   +   ++ ++  +T +++ E+ +     K       
Sbjct: 137 RKNLDFKIVVGGSGAWQLKAKEYEMKKLKIDHLIIGETEHKIAEIFKDIEVEKADEIILI 196

Query: 155 SVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEA 214
             +     +  + G           + +  GC + C FC  P  R       + +++ E 
Sbjct: 197 RDQPSANEIPTIVGP-----SYKGMVEVMRGCGRGCKFCD-PNIR-KVRYYPIKKIIREI 249

Query: 215 RKLIDNGVCEITLLGQNVNAWRGKG---LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPR 271
           +     G     L  +++ ++  +     +  +    +L   + +I       +      
Sbjct: 250 KVNKSAGQNNAWLHSEDIFSYMLEDKKEYNPNEEAVINLFKEVLKIVNYANPTHANIASA 309

Query: 272 DMSDCLIKAHGDLDVLMPY----LHLPVQSGSDRILKSM----NRRHTAYEYRQII---- 319
             +  +IK    L+   P     + +  ++ S  +LK +     +     E+ Q++    
Sbjct: 310 LAAPRIIKEIAKLNNAGPNRWVGVQIGFETASPSLLKKIASNKAKPFNVDEWPQVLLNGT 369

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG------YAQAFSFKYSPRLGT 373
             +       A +S  IVG PG T++D   T  L+  +         +   F   P    
Sbjct: 370 YLLNKYFWFPAYTS--IVGLPGATEEDEIYTARLIITMRKVLREKLGKKAHFVVVPLSFV 427

Query: 374 PGSNMLEQ----VDENVKAERLLCLQKKLREQQVSFNDAC 409
           P   + ++    ++E +    LL +    ++    F    
Sbjct: 428 PMGYLKDKEFFNINEELTKGELLHIYHAWKQILWEFRRGF 467


>gi|167576494|ref|ZP_02369368.1| radical SAM domain/B12 binding domain protein [Burkholderia
           thailandensis TXDOH]
          Length = 647

 Score = 72.7 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 60/312 (19%), Positives = 103/312 (33%), Gaps = 54/312 (17%)

Query: 95  IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE------------- 141
            +   DL V++ G  A     +IL R P  +++V  +    LP +L+             
Sbjct: 98  KRREPDLPVLLGGPHATMLHRQILERFPQFDIIVRYEADEILPAVLDCLPHRTFDVIPGL 157

Query: 142 -----------RARFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKF 189
                      R   GK +V D D      ++   + + G +  R     +    GC   
Sbjct: 158 SWRATGRGSPLRFTDGKPKVEDLDLLPIASYDHYPVEELGLSMLR-----IEAGRGCPFA 212

Query: 190 CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSD 249
           CTFC        + S  L       R+L                +      D        
Sbjct: 213 CTFCSTAGFF--QRSFRLKSAERLVRELDILHQRYRV-------SDFKLDHDMFTVNRRK 263

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
           ++     + G       ++    + + L+K   D       L+  V++GS+R+ K   +R
Sbjct: 264 VMEFCEAVAGRGYRWRASARIDCVDEPLLKKMADAG--CVNLYFGVETGSERMQKLCKKR 321

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSD--FIVGFPGETDDDFRATMDLV-----DKIGYAQA 362
                  Q ++ I +      I +   FI G+P ET +D   T+D++           Q 
Sbjct: 322 ----LDLQRVEPILAAADSFGIETTASFITGYPEETGEDQDDTLDMIGRCARRASCLTQL 377

Query: 363 FSFKYSPRLGTP 374
                 P  GTP
Sbjct: 378 HMLA--PEPGTP 387


>gi|218782779|ref|YP_002434097.1| radical SAM domain protein [Desulfatibacillum alkenivorans AK-01]
 gi|218764163|gb|ACL06629.1| Radical SAM domain protein [Desulfatibacillum alkenivorans AK-01]
          Length = 462

 Score = 72.7 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 55/266 (20%), Positives = 88/266 (33%), Gaps = 22/266 (8%)

Query: 117 ILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGV 176
           +  ++P   V  GP+   +  + L  A             E+ F RL         K   
Sbjct: 142 LAFKTPDGPVYNGPRDMIQDVDALNPAW-------DLIGPENYFSRLGKHTQNRFIKHRK 194

Query: 177 TAFLTIQEGCDKFCTFCVVPYTRGI-EISRSLSQVVDEARKLIDN-GVCEITLLGQNVNA 234
           +  +    GC   C FC      G    +RS   V  E   L D  GV EI +L    N 
Sbjct: 195 SLSVFTSRGCPYHCIFC--HNVFGKQFRARSPEAVTAEIAMLKDRYGVREIEILDDCFNL 252

Query: 235 WRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP 294
            + +     +    + L     +   VR          M + L     ++ V    +   
Sbjct: 253 SKTRAAAICESILDNRLNLDFSLPNGVR-------GDVMDEELWDLFKEVGVFR--VSFA 303

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
            +  S R+ K + +     + RQ I    +    I     F++GFP ET ++   T D  
Sbjct: 304 PEVASPRMQKLVRKNADLDKMRQSIAM--AADRGIVSMGFFMMGFPTETYEEMLMTADYA 361

Query: 355 DKIGYAQAFSFKYSPRLGTPGSNMLE 380
            +     A     +P  GT  + M  
Sbjct: 362 ARSRLHFALFMYLNPFPGTEVARMAG 387


>gi|83716330|ref|YP_438232.1| radical SAM domain/B12 binding domain-containing protein
           [Burkholderia thailandensis E264]
 gi|167614667|ref|ZP_02383302.1| radical SAM domain/B12 binding domain protein [Burkholderia
           thailandensis Bt4]
 gi|257141257|ref|ZP_05589519.1| radical SAM domain/B12 binding domain-containing protein
           [Burkholderia thailandensis E264]
 gi|83650155|gb|ABC34219.1| radical SAM domain/B12 binding domain protein [Burkholderia
           thailandensis E264]
          Length = 647

 Score = 72.7 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 60/312 (19%), Positives = 103/312 (33%), Gaps = 54/312 (17%)

Query: 95  IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE------------- 141
            +   DL V++ G  A     +IL R P  +++V  +    LP +L+             
Sbjct: 98  KRREPDLPVLLGGPHATMLHRQILERFPQFDIIVRYEADEILPAVLDCLPHRTFDVIPGL 157

Query: 142 -----------RARFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKF 189
                      R   GK +V D D      ++   + + G +  R     +    GC   
Sbjct: 158 SWRATGRGSPLRFTDGKPKVEDLDLLPIASYDHYPVEELGLSMLR-----IEAGRGCPFA 212

Query: 190 CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSD 249
           CTFC        + S  L       R+L                +      D        
Sbjct: 213 CTFCSTAGFF--QRSFRLKSAERLVRELDILHQRYRV-------SDFKLDHDMFTVNRRK 263

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
           ++     + G       ++    + + L+K   D       L+  V++GS+R+ K   +R
Sbjct: 264 VMEFCEAVAGRDYRWRASARIDCVDEALLKKMADAG--CVNLYFGVETGSERMQKLCKKR 321

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSD--FIVGFPGETDDDFRATMDLV-----DKIGYAQA 362
                  Q ++ I +      I +   FI G+P ET +D   T+D++           Q 
Sbjct: 322 ----LDLQRVEPILAAADSFGIETTASFITGYPEETGEDQDDTLDMIGRCARRASCLTQL 377

Query: 363 FSFKYSPRLGTP 374
                 P  GTP
Sbjct: 378 HMLA--PEPGTP 387


>gi|253702123|ref|YP_003023312.1| radical SAM protein [Geobacter sp. M21]
 gi|251776973|gb|ACT19554.1| Radical SAM domain protein [Geobacter sp. M21]
          Length = 506

 Score = 72.7 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 69/417 (16%), Positives = 139/417 (33%), Gaps = 70/417 (16%)

Query: 43  RMEDMFFSQGYERVNSMDDADLI----------------VLNTCHIREKAAEKVYSFLGR 86
            +     + GYE V+  D   L                 V+ T              +G 
Sbjct: 31  YIAGSLRAAGYE-VDYYDAMSLWHKWPEIEARIRAFKPDVVATTSFTAS--------IGH 81

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILR-RSPIVNVVVGPQTYYRLPELLERARF 145
              L     K   D++ V     A    +E+L+     V+ +V  +    L +LL+    
Sbjct: 82  ALELTALAKKINPDVVTVHGNVHATFCYDEMLQAEHDTVDYIVRGEGEVTLVKLLDCLNE 141

Query: 146 GKRVVDTD-------------------YSVEDKFERLSIVDGGYNRKRGVT----AFLTI 182
           G    +                       ++       +V+      R       A ++ 
Sbjct: 142 GSDPAEVPGLSFWRDGAVVSTPKAASIQDLDALPMAWDLVEWPIYTYRAKNDARLAIVSS 201

Query: 183 QEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD 241
             GC + C+FC           +RS    V E   L D+   E+ +L   +  +      
Sbjct: 202 SRGCMEKCSFCSQQLFWERSWRARSAENFVAELELLRDSYGVEVAMLSDEIPTF------ 255

Query: 242 GEKCTFSDLLYSLSEIK-GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300
            ++  +  +L  + E K G+  L  T          ++  + +    + ++++ V++G  
Sbjct: 256 -DRERWVRILDLMIERKVGIKLLMETRVDDILRDADIMDKYREAG--VEHIYVGVEAGDQ 312

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
             L   N+     + +  ID I +   DI   + F++G P +T +   AT++L       
Sbjct: 313 ATLDLFNKNTKVEQSKAAIDIINNA--DIVSETSFVLGMPDDTPESIAATIELAKHYNPD 370

Query: 361 QAFSFKYSPRLGTPGSNMLEQVDENV--KAERLLCLQKKL---REQQVSFNDACVGQ 412
            AF    +P      + +  +++  V  K  R   L + +   +   V   +  +G+
Sbjct: 371 MAFFLAIAPWPY---AELYPELEPYVATKDYRKYNLVEPVIKPKAMTVEELERELGR 424


>gi|91203728|emb|CAJ71381.1| hypothetical protein kustc0636 [Candidatus Kuenenia
           stuttgartiensis]
          Length = 484

 Score = 72.7 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 41/252 (16%), Positives = 89/252 (35%), Gaps = 20/252 (7%)

Query: 159 KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI-----EISRSLSQVVDE 213
            F    +       +      + +  GC   CT+C     R +        RS   V+DE
Sbjct: 174 PFPDREMWKDWICEQPASITPVLLGRGCPFQCTYCSNHALRKVASGAYVRLRSPDNVIDE 233

Query: 214 ARKL--IDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPR 271
            +++   D    +I L  + +   R   ++               +   V LR T++   
Sbjct: 234 IKEITAFDPTRKDIYLEVETMGVNRKWDMELCAKLEGLNASLSHPLNFGVNLRVTSNADI 293

Query: 272 DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR-HTAYEYRQIIDRIRSVRPDIA 330
           +    + K          ++++ ++SGS+R+ + + +R ++  +  + +   R     + 
Sbjct: 294 ENLFVVFK-----KSNFKFVNIGLESGSERVRREILKRNYSNEDIIKAVTLARKY--GLK 346

Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE-----QVDEN 385
           ++   ++G PGET  DF  T+ +             + P  GT    + +     Q   +
Sbjct: 347 VNFYNLMGIPGETVADFNETIRMNRICQPDTQMLSIFYPYPGTDLYALCKDQGLLQEPLS 406

Query: 386 VKAERLLCLQKK 397
              ER   +   
Sbjct: 407 TDMERSKAVLDL 418


>gi|308271792|emb|CBX28400.1| hypothetical protein N47_G37240 [uncultured Desulfobacterium sp.]
          Length = 501

 Score = 72.7 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 68/354 (19%), Positives = 115/354 (32%), Gaps = 40/354 (11%)

Query: 80  VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL 139
            +   G + +L  +  K+G    + + G         IL     V+ VV  +    L EL
Sbjct: 79  FWENTGLVFDLLANLKKDGFCGHITLFGFFPTLAHAAILENIASVDSVVVCECENTLTEL 138

Query: 140 LERARFGKRVVDTD-----------YSVEDKFERLSIVDGGYNRKRGVTAFLTI--QEGC 186
            +     K +                S +   E+         R       + I    GC
Sbjct: 139 ADSLSKDKNLAGIAGLCLRTEHGITISKQRIPEQNIDKFYFPERTNTDDQTVPILASRGC 198

Query: 187 DKFCTFCVVPYTRGI---EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
              C FC+VP           R    +  E   L D G  +   +  N      KG +  
Sbjct: 199 YNHCAFCLVPSFYNDGALWRGRYPENIYQEISALADKGCRDFYFVDPNFIGPGKKGKE-R 257

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
                +L+  L+   G+       + P D+   ++++          L L ++SGS  +L
Sbjct: 258 INKLMELIRPLNISFGME------TRPNDLDPNILESLVSSG--FKTLLLGIESGSSSVL 309

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY---- 359
            ++N+  +     + I   R     I     F++  P  T +D R   + + K       
Sbjct: 310 TNLNKGASINSGEKAIKLCRDA--GIEPEVGFLMFVPDSTLEDLRHNFEFLQKNNLLDRL 367

Query: 360 ---AQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACV 410
              A   S +    +GT G  M E      K  RL        E +V++ D  V
Sbjct: 368 ERTANLLSHRQLVLMGTSGYQMFE------KQGRLKKAGVLGFEGEVAYQDIRV 415


>gi|257125087|ref|YP_003163201.1| radical SAM protein [Leptotrichia buccalis C-1013-b]
 gi|257049026|gb|ACV38210.1| Radical SAM domain protein [Leptotrichia buccalis C-1013-b]
          Length = 442

 Score = 72.7 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 53/330 (16%), Positives = 105/330 (31%), Gaps = 38/330 (11%)

Query: 48  FFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAG 107
              +  E ++  +DA+++V+    +    A   Y    R R              V+V G
Sbjct: 45  LIDERIEAIDYDNDANVVVI---TLETYTARHGYEIAKRFREKGKK---------VIVGG 92

Query: 108 CVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVD 167
             A    +E        + VV         +++E  R G         + +KF    I D
Sbjct: 93  THASLVPDE---AMKHADSVVTGYADDIWEKIIEDYRNGTEKKLYIGGLSNKF---LIPD 146

Query: 168 GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR-GIEISRSLSQVVDEARKLIDNGVCEIT 226
               +K+ + + +    GC   C FC +          R +  V++E + +       I 
Sbjct: 147 RSIFKKKYLISVVETGRGCPHHCEFCAISAVNKKRYAKRPVDSVIEELKHIKS---KYIF 203

Query: 227 LLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV 286
               N  A        +     +L   +  +K         +     ++ L++A  D   
Sbjct: 204 FADDNFVA--------DPKYALELCEKIKPLKKKW--ISQGAITMAKNEKLLEAMRDSG- 252

Query: 287 LMPYLHLPVQSGSDRILKSMNRRHTAY--EYRQIIDRIRSVRPDIAISSDFIVGFPGETD 344
              ++ +  +S +   L +M +  +    +  +    I     +I I + F+ GF  +  
Sbjct: 253 -CLFILIGYESINKEALDNMKKEWSYKLGDIEESTRIIHKY--NIGIYATFVFGFEEKIG 309

Query: 345 DDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
             F  T+    K            P   T 
Sbjct: 310 TTFEDTVKFAQKNHLEFVQFNYLVPFPNTE 339


>gi|229815225|ref|ZP_04445561.1| hypothetical protein COLINT_02271 [Collinsella intestinalis DSM
           13280]
 gi|229809235|gb|EEP45001.1| hypothetical protein COLINT_02271 [Collinsella intestinalis DSM
           13280]
          Length = 424

 Score = 72.7 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 41/214 (19%), Positives = 72/214 (33%), Gaps = 27/214 (12%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD---- 241
           C   C +C          SR     +             I L  Q         LD    
Sbjct: 39  CKAKCLYC-------DFDSR----ALGGCELDAAMDRYCIALTSQIDTYGAAGELDEVET 87

Query: 242 -----GEKCTF-SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPV 295
                G    F + L+  +  ++G       T      S  L  A    +  +  + L V
Sbjct: 88  VYIGGGTPSIFGARLVSLVERVRGYCDPTEFTCEANPESFTLELAQALREAGVTRISLGV 147

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
           Q+     LK++ R H+A +    I + +++    + S D + G PG+T + F  T++ + 
Sbjct: 148 QTLDAGELKAIGRIHSAEQAMLAIAQAKAI--GFSTSCDVMCGLPGQTLESFGRTLETLM 205

Query: 356 KIGYAQAFSFKYSPRLGTPGSNMLEQ----VDEN 385
            +       +      GTP + + EQ    V + 
Sbjct: 206 TLRPDHISVYPLQLEEGTPLARLEEQGRIAVPDE 239


>gi|218782940|ref|YP_002434258.1| radical SAM domain protein [Desulfatibacillum alkenivorans AK-01]
 gi|218764324|gb|ACL06790.1| Radical SAM domain protein [Desulfatibacillum alkenivorans AK-01]
          Length = 470

 Score = 72.7 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 50/321 (15%), Positives = 97/321 (30%), Gaps = 38/321 (11%)

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGP--------QTYYRLPE 138
           ++ +  +  K   D  +V+    A     E+L +     VV G           +     
Sbjct: 82  LKVMVPALRKACPDAKIVLGNIHATLFARELLEQGLADYVVHGEAERTVQRLNAFLEGKG 141

Query: 139 LLERA------RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTI---------- 182
            LE        R G+   + +       + L +    +       A              
Sbjct: 142 KLEEVQGLSCIRDGQVWTNPEAEPLQDLDSLPLPAWRHFDLDQYIAPPLFAFKKRLLPVL 201

Query: 183 -QEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD 241
              GC   C FC           R + +VVDE  K+           G ++  +      
Sbjct: 202 ASRGCPYRCYFCAQNVMSPTLRRRDMVKVVDEIEKVHHE-------TGVDLFWFCDAIFP 254

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
             +         ++E     ++++ T    D+ D  +        L   +   ++SG   
Sbjct: 255 LTQKDAEVFCREMTERGLHKKIQWITETRVDLVDRPLLRMLKQAGL-SMVLFGLESGDRE 313

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
           +L  + +  T     + +    +    +     F++G PGET      T+    +IG   
Sbjct: 314 VLSRIKQGVTLEAGAKAVAA--ARAEGVTTLGLFMLGLPGETRQTMEKTIGFAQRIGLDF 371

Query: 362 AFSFKYSPRLGTPGSNMLEQV 382
           A   + +P  G   S   + V
Sbjct: 372 AKFNRAAPYPG---SKFFDDV 389


>gi|189499849|ref|YP_001959319.1| Radical SAM domain-containing protein [Chlorobium phaeobacteroides
           BS1]
 gi|189495290|gb|ACE03838.1| Radical SAM domain protein [Chlorobium phaeobacteroides BS1]
          Length = 681

 Score = 72.7 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 60/314 (19%), Positives = 110/314 (35%), Gaps = 34/314 (10%)

Query: 78  EKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ------ 131
              Y  L   R LK  R     ++ V++ G  A A     + R   ++ ++  +      
Sbjct: 93  NSYYVTLAIARELKRKR----PEIRVLLGGTHATATAMHTMERCSYIDFILAGEIEDSLE 148

Query: 132 --------TYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQ 183
                   +   +P L  R       V+T     +  +         +     +  +   
Sbjct: 149 SFSRCYDASPEDVPGLYWRDSRKTIRVNTFGPPPNLEDMPLPAYDLCDDYNLDSFMVEAG 208

Query: 184 EGCDKFCTFCVVPYTRGI-EISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLD 241
            GC   C FC   +  G     R    ++DEA  L    G   I LL  N+     K L 
Sbjct: 209 RGCPFHCRFCSTSHFFGRAYRLRPFDTILDEASVLNTKFGFPRIALLHDNLFHSHRKLL- 267

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
               +F     + S  +GL      +     +S  + +   +       + + V++GS R
Sbjct: 268 ----SFCRKWKNDSRTEGLSWN--CSLRADSISPEIAEELSNSG--CESVFIGVETGSQR 319

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI---G 358
           + + + +R    + RQ+ID +      +  +  F++GFP E  ++ R T+D   ++    
Sbjct: 320 VQQVIEKRLKIDKVRQVIDSLHKY--GVRTTVAFMIGFPEERREEVRLTLDFYYEMLCRR 377

Query: 359 YAQAFSFKYSPRLG 372
            A       SP  G
Sbjct: 378 LASPQIDMLSPVNG 391


>gi|39997979|ref|NP_953930.1| B12 binding /radical SAM domain-containing protein [Geobacter
           sulfurreducens PCA]
 gi|39984924|gb|AAR36280.1| B12-binding domain protein/radical SAM domain protein [Geobacter
           sulfurreducens PCA]
 gi|298506920|gb|ADI85643.1| anaerobic magnesium-protoporphyrin IX monomethyl ester oxidative
           cyclase-related enzyme [Geobacter sulfurreducens KN400]
          Length = 503

 Score = 72.3 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 66/416 (15%), Positives = 131/416 (31%), Gaps = 68/416 (16%)

Query: 43  RMEDMFFSQGYERVNSMDDADLI----------------VLNTCHIREKAAEKVYSFLGR 86
            +     + GYE V+  D   L                 V+ T        +     +  
Sbjct: 32  YIAGSLRAAGYE-VDYYDAMSLWHTWPDIRRRIEAFRPDVVATTAFTASIVD----AIRL 86

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEIL-RRSPIVNVVV---------------GP 130
           +R  K         ++ V+    A    +EIL      V+ +V                 
Sbjct: 87  LRFAKE----IDPGIVTVLGNVHATFCYDEILAHDHDAVDFIVRGEGEVTLPRLCTCLNA 142

Query: 131 QTYYRLPELLERARFGKRVVDTDYSVEDKFERLS----IVDGGYNRKRGVT----AFLTI 182
                  E L   R G  VV          + L     +V+      R       A ++ 
Sbjct: 143 GDDPYKVEGLAFRRDGGVVVTPRAPYIHDLDGLPMAWDLVEWPIYTYRAKNDARLAIVSS 202

Query: 183 QEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD 241
             GC + C+FC           +RS    V E   L      ++ +L   +  +      
Sbjct: 203 SRGCKQQCSFCSQQLFWSQSWRARSAENFVAELEMLHTVHGVQVAMLSDEIPTF---DRQ 259

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
                   ++     +K L+  R            ++  + +    + ++++ V++G+  
Sbjct: 260 RWVRILDLMIERQVPVKLLMETRV---DDILRDADIMDRYREGG--VEHIYVGVEAGTQE 314

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
            L    +     + +Q ID I +   DI   + F++G P +T +    T++L        
Sbjct: 315 TLDLFKKDTQVEQSKQAIDLINNA--DIVSETSFVLGMPDDTPESIAQTIELAKHYNPDM 372

Query: 362 AFSFKYSPRLGTPGSNMLEQVDENV--KAERLLCLQKKL---REQQVSFNDACVGQ 412
           AF    +P      + +  Q++E V  K  R   L + +   +   +   +  +G+
Sbjct: 373 AFFLAIAPWPY---AELYPQLEEYVATKDYRKYNLVEPVIKPKHMTLEELERQLGK 425


>gi|302342478|ref|YP_003807007.1| radical SAM domain protein [Desulfarculus baarsii DSM 2075]
 gi|301639091|gb|ADK84413.1| Radical SAM domain protein [Desulfarculus baarsii DSM 2075]
          Length = 530

 Score = 72.3 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 82/220 (37%), Gaps = 15/220 (6%)

Query: 166 VDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG-IEISRSLSQVVDEARKLIDNGVCE 224
           +  G  R  G+   +T   GC   C FCV     G      S  +VVDE   L   G  +
Sbjct: 174 IPLGRYRAIGMPISMTTSRGCPFQCIFCVGRKMVGSKVRYHSTKRVVDEFESLTKLGFHQ 233

Query: 225 ITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL 284
           I +      A         K     +   +   +G+     + +    +S  +++A    
Sbjct: 234 INIADDLFTA--------NKKHCIPICEEIIA-RGIDYKWTSFARVDTVSPEVLRAMKKA 284

Query: 285 DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETD 344
                 +   V++G+  I+K + +  +  +  + +         +   + FI+G PGET 
Sbjct: 285 G--CTAVSFGVETGNPEIMKRIKKGISLDQVTKAVAMTAEA--GLLPHASFILGLPGETP 340

Query: 345 DDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
              R T +  D +       + +      PG+ +LE++DE
Sbjct: 341 QTLRQTQEFADSLA-ELGCLYGFHLLAPFPGTEVLERIDE 379


>gi|326201007|ref|ZP_08190879.1| cobalamin B12-binding domain protein [Clostridium papyrosolvens DSM
           2782]
 gi|325988575|gb|EGD49399.1| cobalamin B12-binding domain protein [Clostridium papyrosolvens DSM
           2782]
          Length = 543

 Score = 72.3 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 46/301 (15%), Positives = 100/301 (33%), Gaps = 32/301 (10%)

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF--- 145
            +     ++  +  +          G+ ++ + P+V+ ++  +       L+        
Sbjct: 77  EVCKKIKEKVPNAKICFGAYWPTLCGDILMEKYPMVDFIIKGEGEIVFKNLVTAMENDSG 136

Query: 146 -----------GKRVVDTD-YSVEDKFERLSIVDGGYNRKRGVT-AFLTIQEGCDKFCTF 192
                      G ++++ +  ++ +  + L   +    R   +  A+++   GC   C+F
Sbjct: 137 YSNVKGLLYRDGDKIIENEREALIEDLDSLPFPERDLLRNNMLKYAYISTSRGCKANCSF 196

Query: 193 C---VVPYTRGIE--ISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCT 246
           C       T G      RS   VV E ++++D   V     +  +               
Sbjct: 197 CWHNDFWGTNGKNQWRGRSPENVVREVKQIVDEYNVNRFWFIDDSFEDCNKSC----PNR 252

Query: 247 FSDLLYSLSE--IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304
             ++   + E  +       +     +   +  IK   D   +       ++SG+   LK
Sbjct: 253 MWEIAEKIIENNLHISYETYFRAEVYKQFDEKKIKLLKDSGFV--GTIFGIESGNAEDLK 310

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
             N+  TA +    I   R    DIAI   FI   P  T       +D ++K  +A    
Sbjct: 311 LYNKPATAEDNYNTIKYFRDN--DIAIDIGFINFNPYSTIKRLSENVDYLEKTCFASVLY 368

Query: 365 F 365
           +
Sbjct: 369 Y 369


>gi|189426041|ref|YP_001953218.1| radical SAM protein [Geobacter lovleyi SZ]
 gi|189422300|gb|ACD96698.1| Radical SAM domain protein [Geobacter lovleyi SZ]
          Length = 622

 Score = 72.3 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 58/308 (18%), Positives = 100/308 (32%), Gaps = 31/308 (10%)

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
               L     ++  DLL++  G  A A+   +L  +P   +VVG        ELLER   
Sbjct: 77  ECCKLITMLRQQFPDLLLIAGGPEATADPARLLAEAPFDLLVVGEGELTA-AELLERCLA 135

Query: 146 GK---------RVVDTDYSVEDK--FERLSIVDGGY-----NRKRGVTAFLTIQEGCDKF 189
           G          ++V+ +  V  +   E L+I+   Y     +R         +  GC   
Sbjct: 136 GAPLQGLPGAAQLVNDELQVIPRAQIEDLAILPSPYLAGLLDRHIENGMVWQLSRGCPYA 195

Query: 190 CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSD 249
           C FC             L ++  E   L++ G  +I  L    N         +K     
Sbjct: 196 CEFCYDGMGDRKVRRYPLDRMEQELAYLVERGASQIFALDSTFNT--------DKKRAKH 247

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
           LL  + E    V   +   H   +     +    L      + + +QS    +   + R 
Sbjct: 248 LLRLIRETAPDVHFHFEVRHEL-LDKEQAQLFAQLTC---SVQIGLQSADPAVAGGVGRT 303

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369
               E+   +  +           D I G P +  D FR  ++    +       F  + 
Sbjct: 304 FNRDEFTAKVMLLNDS--GATFGFDLIYGLPDDCLDKFREGLNFALSLYPNHLDIFPLAV 361

Query: 370 RLGTPGSN 377
             GT  ++
Sbjct: 362 LPGTKVAH 369


>gi|169333816|ref|ZP_02861009.1| hypothetical protein ANASTE_00202 [Anaerofustis stercorihominis DSM
           17244]
 gi|169259381|gb|EDS73347.1| hypothetical protein ANASTE_00202 [Anaerofustis stercorihominis DSM
           17244]
          Length = 567

 Score = 72.3 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 47/310 (15%), Positives = 108/310 (34%), Gaps = 37/310 (11%)

Query: 58  SMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEI 117
             + +D+ + ++           Y +         S +K+  +  +V+ G       +  
Sbjct: 52  FYEKSDVYIFSS-----------YIWNIEYVLKVASSLKKTTNAKIVLGGSEVSFNAKNY 100

Query: 118 LRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDT--------DYSVEDKFERLSIVDGG 169
             R   ++ ++  +      +LL      K++           DY+   K    + V   
Sbjct: 101 FDRYDFIDYILAGEGEEITYDLLNGINNNKKISIVNVFDKNSKDYNYIKKHIDFNKVIFP 160

Query: 170 YNRKRGVTAFLTI-----QEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCE 224
           Y           I     Q GC   C++C+          R L++V +E    IDN +  
Sbjct: 161 YKNVNMEDFQNKIIYYESQRGCPYNCSYCL-SELDKSLRFRDLNKVKEEIMFFIDNNIPL 219

Query: 225 ITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL 284
           +  + +  NA        +     +++  +       +  +       + D +I+  G  
Sbjct: 220 VKFIDRTFNA--------DNKRAKEIIRFILRNSKHTKFHFEV-CANLLDDEIIELLGSA 270

Query: 285 DVLMPYLHLPVQSGSDRILKSMNRRHTAYEY-RQIIDRIRSVRPDIAISSDFIVGFPGET 343
              M  L + +QS ++  +K +NR     +    ++  +++   ++ I  D I G P E 
Sbjct: 271 PNDMFQLEIGLQSINEHTIKEINRTTDTEKIGINVLKLLKN--DNVHIHLDLISGLPYED 328

Query: 344 DDDFRATMDL 353
            + F+ + + 
Sbjct: 329 LNSFKESFNF 338


>gi|325679562|ref|ZP_08159140.1| radical SAM domain protein [Ruminococcus albus 8]
 gi|324108744|gb|EGC02982.1| radical SAM domain protein [Ruminococcus albus 8]
          Length = 510

 Score = 72.3 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 82/229 (35%), Gaps = 19/229 (8%)

Query: 155 SVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG-IEISRSLSQVVDE 213
           +++  F          N     T  +    GC   C FC V    G    + S+  V+  
Sbjct: 203 NLDKVFNNKYYSRWRNNPSNKRTIPIFTSRGCPFNCCFCSVHSQVGYRHRTYSIEYVISL 262

Query: 214 ARKLI-DNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
            +K I D G+        N+       LD E+     L   ++++  +            
Sbjct: 263 MKKCIFDYGINHFHFEDDNLT------LDIERA--KRLFKEIAKLN-ITWDTPNGVRADR 313

Query: 273 MSDCLIKAHGDLDVLMPYLHLPVQSGSDR-ILKSMNRRHTAYEYRQIIDRIRSVRPDIAI 331
           + D +++   +    +  L +  +SG+++  +K +++          +        D+  
Sbjct: 314 IDDEMVQLMIESG--LTSLSIAAESGNEQVRMKIIHKNLKTESIINAVRICDKY--DLPC 369

Query: 332 SSDFIVGFPGETDDDFRATMDLVDKI--GYAQA-FSFKYSPRLGTPGSN 377
              F++GFPGET ++   T+    +I   Y      F  +P  GT  S 
Sbjct: 370 IVFFVLGFPGETMENIEDTVRFAKEITNKYNTINMIFIANPLPGTELSK 418


>gi|260220929|emb|CBA28989.1| hypothetical protein Csp_A09880 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 102

 Score = 72.3 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 21/99 (21%), Positives = 38/99 (38%), Gaps = 11/99 (11%)

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKH---GKEK--GKLVGRS 432
           M   +   V+ ER     +   E   +     VG +++VL++     G++   G+    +
Sbjct: 1   MPGMLPVEVREERRARFMQVAEEVSAARLQRRVGSVMQVLVDSAPALGRKGGVGRSYADA 60

Query: 433 PWLQSVV------LNSKNHNIGDIIKVRITDVKISTLYG 465
           P +  VV        SK   +G+  K RI   +   L  
Sbjct: 61  PEIDGVVRLLPPEKISKTLKVGEFTKARIVSAQGHDLVA 99


>gi|21674591|ref|NP_662656.1| bacteriochlorophyll c8 methyltransferase [Chlorobium tepidum TLS]
 gi|21647789|gb|AAM72998.1| bacteriochlorophyll c8 methyltransferase [Chlorobium tepidum TLS]
          Length = 451

 Score = 72.3 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 47/308 (15%), Positives = 93/308 (30%), Gaps = 30/308 (9%)

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             +   R  + +         VV+ G       EE    +  + V      +  L + + 
Sbjct: 53  RTIEATRAYEIADEFRKRGKTVVLGGLHISFNPEEAAAHADCIVVGEADNLWTTLLDDVA 112

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGV-----TAFLTIQEGCDKFCTFCVVP 196
             R  +R    D+        L         KR       +  + +  GC   C+FCV P
Sbjct: 113 NNRLKERYDSKDFPPVKAITPLDYARIAKASKRTKVDGTKSIPIYVTRGCPFNCSFCVTP 172

Query: 197 YTRGI-EISRSLSQVVDEARKLIDNGVCE--------ITLLGQNVNAWRGKGLDGEKCTF 247
              G     +    +  +  +                  L  +N+           K   
Sbjct: 173 NFTGKQYRVQDPKLLKHQIEEAKKYFFKANGKNSKPWFMLTDENLGI--------NKKKL 224

Query: 248 SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307
            + L  L E      + ++     +  +        +D    ++   ++S     L++ N
Sbjct: 225 WESLDLLKECD----ITFSVFLSINFLEDPTTVKKLVDAGCNFVLAGLESIKQSTLEAYN 280

Query: 308 RRH--TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           + H  +A +Y +II+  R     + I  +F+     +T +D    +  V K         
Sbjct: 281 KGHVNSAEKYSKIIEDCRKA--GLNIQGNFLFNPAIDTFEDIDELVQFVKKNHIFMPIFQ 338

Query: 366 KYSPRLGT 373
             +P  GT
Sbjct: 339 IITPYPGT 346


>gi|330839598|ref|YP_004414178.1| oxygen-independent coproporphyrinogen III oxidase [Selenomonas
           sputigena ATCC 35185]
 gi|329747362|gb|AEC00719.1| oxygen-independent coproporphyrinogen III oxidase [Selenomonas
           sputigena ATCC 35185]
          Length = 385

 Score = 72.3 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 40/206 (19%), Positives = 71/206 (34%), Gaps = 24/206 (11%)

Query: 186 CDKFCTFCVVPYTRGIEI--SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
           C + C +C  P   G E   SR    +    R++   G   +                G 
Sbjct: 13  CRRKCFYCDFPSYAGEERWMSRYREAL---CREIAAQGCRCLQEGAVRTVYI------GG 63

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDC---------LIKAHGDLDVLMPYLHLP 294
               +     L  +   VR  +  +   + +           L++   +    +  L   
Sbjct: 64  GTPTALAADDLLAVICSVRESFHLTGAEEFTVEANPGTVDAKLLERLREAG--VNRLSFG 121

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           VQS SD +L ++ R HTA E    +   +       +S D + G PG+T  D + ++   
Sbjct: 122 VQSFSDALLAAIGRIHTAREAEDAVRMAQKA--GFRVSLDLMYGLPGQTLSDLKDSVARA 179

Query: 355 DKIGYAQAFSFKYSPRLGTPGSNMLE 380
             +G      +  +   GTP + M E
Sbjct: 180 AALGIGHISVYGLAVEDGTPFARMEE 205


>gi|288802794|ref|ZP_06408231.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Prevotella melaninogenica D18]
 gi|288334611|gb|EFC73049.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Prevotella melaninogenica D18]
          Length = 422

 Score = 72.3 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 48/257 (18%), Positives = 94/257 (36%), Gaps = 42/257 (16%)

Query: 186 CDKFCTFC----VVPYTRGIEI-S---RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG 237
           C   C +C     VP  +  E  S   R ++ +  E     +         G+ +     
Sbjct: 11  CASRCIYCGFYSTVPTKKKDERLSIEERYVNAICHEMELRAEKNSDS---SGERIGGLST 67

Query: 238 KGLDGEKCT---FSDLLYSLSEIKGLVRLRYTT------------------SHPRDMSDC 276
             L G   +   F  L      +  +  +                       +P D+++ 
Sbjct: 68  IYLGGGTPSQLSFESLQKIFQTVDKVYHIGLEWDIANNTCTTATPIEVTMECNPDDVTEE 127

Query: 277 LIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI-AISSDF 335
             +    L +    + +  Q+ SD  L+ ++RRHTA E    + R+RSV  +I  IS D 
Sbjct: 128 FAQNLRSLPI--NRISMGAQTFSDERLRFLHRRHTADEVETAVKRLRSV--NIKNISVDL 183

Query: 336 IVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML-----EQVDENVKAER 390
           + GFP ET ++++  ++ +  +      ++      GTP   +L     + +D+ +  + 
Sbjct: 184 MFGFPNETLEEWKEDIERLLALDIEHISAYSLMYEEGTPLYRLLQAGKVKDMDDELYRQM 243

Query: 391 LLCLQKKLREQQVSFND 407
              L  +L E      +
Sbjct: 244 YDTLIDRLAEAGYEQYE 260


>gi|213584014|ref|ZP_03365840.1| hypothetical protein SentesTyph_23450 [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
          Length = 61

 Score = 72.3 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 29/61 (47%)

Query: 363 FSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422
             FKYSP  G   + + +QV E VK ER     +  ++         VG+ I V++++  
Sbjct: 1   GCFKYSPVEGAGANELPDQVPEEVKEERWNRFMQLQQQISAERLQEKVGREILVIVDEVD 60

Query: 423 K 423
           +
Sbjct: 61  E 61


>gi|298504361|gb|ADI83084.1| cobalamin-binding radical SAM domain iron-sulfur cluster-binding
           oxidoreductase [Geobacter sulfurreducens KN400]
          Length = 487

 Score = 72.3 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 36/201 (17%), Positives = 68/201 (33%), Gaps = 27/201 (13%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK 238
           +    GC   C+FC V    G     RS++ VV++     D+       +  ++      
Sbjct: 193 VETARGCPHRCSFCSVWQLYGRSCRERSIAAVVEDFATAGDS-----IFVADDLFWH--- 244

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLI----KAHGDLDVLMPYLHL- 293
                     +L  +L +     R  +           LI            L     + 
Sbjct: 245 ----NPARSLELADALKK-----RRIFKRWILVQTRTDLICRSADLMAAWRPLAKDFDIF 295

Query: 294 -PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352
             +++ +D+ L  + +     E  + +   R +R  I    +F++  P   +DDFR    
Sbjct: 296 LGLEAATDKGLAGITKDSGVAESVEAVRLARELRYGIN--GNFLID-PDWDEDDFRDLWG 352

Query: 353 LVDKIGYAQAFSFKYSPRLGT 373
            V + G  +A     +P  GT
Sbjct: 353 FVARYGLQRAGFTILTPLPGT 373


>gi|218459119|ref|ZP_03499210.1| Mg-protoporphyrin IX monomethyl ester oxidative cyclase subunit
           protein [Rhizobium etli Kim 5]
          Length = 366

 Score = 72.3 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 57/328 (17%), Positives = 105/328 (32%), Gaps = 37/328 (11%)

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVV---GPQTYYRLPELLERA 143
            R +  +  +    + +V  G        E+L  +    +VV   G +T  RL + L   
Sbjct: 19  ARAIAEAVKRCDPAIRIVYGGVFPTYHWREVLAETEAFEIVVRGEGEETMRRLADALAAN 78

Query: 144 R-----FGKRVVDTDYSVEDKFERLSIVDGGYNR-------------KRGVTAFL-TIQE 184
           R      G    D    V+      +I D    R               G  A +     
Sbjct: 79  RPLDSIAGVAYRDGHGEVQATQPAQAIADLDAYRIGWELIDHARYSYWGGKRAVVMQFSR 138

Query: 185 GCDKFCTFCVVPYTRGIEISRSLSQV-VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
           GC   C +C           RS      + AR   + GV  I L  +N  + R       
Sbjct: 139 GCPHLCNYCGQRGFWTRWRHRSPELFAREIARLYREQGVELINLADENPTSSR------- 191

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
           K   + L   ++E   +  +  T +        ++  +    V+     L +++  +  L
Sbjct: 192 KAWLAFLEAMIAENVPVQIVGSTRADDIVRDADILHLYRKAGVVR--WLLGMENTDEATL 249

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
             + +       R+ I  +R  R DI   + ++VGF  E   D       +      Q  
Sbjct: 250 ALIKKGGAKATDREAIRLLR--RHDILSMATWVVGFEEEKLSDLWRGFRQLLSYDPDQIQ 307

Query: 364 SFKYSPRLGTPGSNMLEQ---VDENVKA 388
           +   +P   TP   +      ++ +++ 
Sbjct: 308 ALYVTPHRWTPFFRIARDRQVIEADIRK 335


>gi|302809031|ref|XP_002986209.1| hypothetical protein SELMODRAFT_123663 [Selaginella moellendorffii]
 gi|300146068|gb|EFJ12740.1| hypothetical protein SELMODRAFT_123663 [Selaginella moellendorffii]
          Length = 68

 Score = 72.3 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 26/67 (38%), Positives = 42/67 (62%)

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           M R +T  E+R+I+D +  + P+I I++D I GFPGET +DF   M+L+ +  + Q    
Sbjct: 1   MKREYTFSEFRKIVDTLTRLVPEIHIATDIICGFPGETSEDFDRIMELIREYTFPQVHIS 60

Query: 366 KYSPRLG 372
           ++ PR G
Sbjct: 61  QFYPRPG 67


>gi|189347200|ref|YP_001943729.1| Radical SAM domain protein [Chlorobium limicola DSM 245]
 gi|189341347|gb|ACD90750.1| Radical SAM domain protein [Chlorobium limicola DSM 245]
          Length = 473

 Score = 72.3 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 53/305 (17%), Positives = 99/305 (32%), Gaps = 26/305 (8%)

Query: 71  HIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGP 130
            ++  A +  +     +R+     +  G  + +    C    E  ++L      ++    
Sbjct: 94  SVQTGAVKPAFDLARVLRSKGIKVVLGGPYVTIFPDRC---REHGDVLVIGEADDIWREV 150

Query: 131 QTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190
           Q   RL  L    R        D S++    + ++  G Y         +    GC   C
Sbjct: 151 QEDLRLGALKAEYRV---ASFPDLSLDRVVGKSALDIGSYFTTN----VVQTTRGCPYSC 203

Query: 191 TFCVVPYTRG-IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSD 249
            FC V    G     R++  V+ E    +         L   +NA     +  EK     
Sbjct: 204 DFCNVHVMNGHRLRHRTIPSVLREVETFLREDKRIFFFLDDTINA---DEIYAEK----- 255

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
           L   L    G+  +   T+   +    L+ A          L + ++S +D    +  + 
Sbjct: 256 LFRELIPF-GISWVGQATTALGEKPR-LLDAFARSG--CGALLVGIESLADGSNHAHQKF 311

Query: 310 HTAYEYRQIIDRIRSVR-PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
           H     +     IR++R   I +   FI G   +T D  +   + +++ G          
Sbjct: 312 HNPAVRQAAC--IRNIRQAGICVYGSFIYGLDEDTLDMPQMLEEFIEETGIDVPGINLLR 369

Query: 369 PRLGT 373
           P  GT
Sbjct: 370 PIPGT 374


>gi|254974329|ref|ZP_05270801.1| putative adenosylcobamide-dependent radical SAM superfamily protein
           [Clostridium difficile QCD-66c26]
 gi|255091725|ref|ZP_05321203.1| putative adenosylcobamide-dependent radical SAM superfamily protein
           [Clostridium difficile CIP 107932]
 gi|255313453|ref|ZP_05355036.1| putative adenosylcobamide-dependent radical SAM superfamily protein
           [Clostridium difficile QCD-76w55]
 gi|255516141|ref|ZP_05383817.1| putative adenosylcobamide-dependent radical SAM superfamily protein
           [Clostridium difficile QCD-97b34]
 gi|255649237|ref|ZP_05396139.1| putative adenosylcobamide-dependent radical SAM superfamily protein
           [Clostridium difficile QCD-37x79]
 gi|260682410|ref|YP_003213695.1| putative adenosylcobamide-dependent radical SAM superfamily protein
           [Clostridium difficile CD196]
 gi|260686009|ref|YP_003217142.1| putative adenosylcobamide-dependent radical SAM superfamily protein
           [Clostridium difficile R20291]
 gi|306519339|ref|ZP_07405686.1| putative adenosylcobamide-dependent radical SAM superfamily protein
           [Clostridium difficile QCD-32g58]
 gi|260208573|emb|CBA61259.1| putative adenosylcobamide-dependent radical SAM superfamily protein
           [Clostridium difficile CD196]
 gi|260212025|emb|CBE02579.1| putative adenosylcobamide-dependent radical SAM superfamily protein
           [Clostridium difficile R20291]
          Length = 584

 Score = 72.3 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 51/331 (15%), Positives = 112/331 (33%), Gaps = 37/331 (11%)

Query: 60  DDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILR 119
           ++ D+I+ +T              +G I  L ++  K   +  + + G     +  E ++
Sbjct: 53  NEYDIILFST----------YIWNVGDIVKLCDNLKKIRPNTKIALGGPEVSYDSYEAMK 102

Query: 120 RSPIVNVVVGPQTYYRLPELLERARFGKRVVD------------TDYSVEDKFERLSIVD 167
           +   V+ ++  +      +L+   +   ++ D                  +  + L  + 
Sbjct: 103 KYDFVDYILYGEGELIFRDLVLHLQGKMKINDVNGLVYRQGNEIIVNKPMELLQDLDEIP 162

Query: 168 GGYNRKRGVTAFLTI-----QEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGV 222
             Y           I       GC   C +C+     G     SL ++  + + LID  V
Sbjct: 163 SPYENLNPKEYENRIVYYESSRGCPFNCQYCLSSTIPG-LRYFSLDRIKSDLKALIDARV 221

Query: 223 CEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHG 282
            +I  + +  NA         +    +++  L +        +       + D +++   
Sbjct: 222 SQIKFIDRTFNA--------NRKVAMEIMDFLMKNDNGYTTYHFEVTAYLIDDKMLEFLA 273

Query: 283 DLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGE 342
           D    +    + VQS +++ L ++ RR    +   ++  + S R +I    D I G P E
Sbjct: 274 DCKEGLFQFEIGVQSTNEKTLDAVGRRDDFKKLSHVVQTVASYR-NIHQHLDLIAGLPYE 332

Query: 343 TDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
               F  + + V  +G             GT
Sbjct: 333 DYKSFENSFNDVFNLGIEHLQLGFLKMIKGT 363


>gi|9937241|gb|AAG02372.1|AF210249_32 coproporphyrinogen III oxidase-like protein [Streptomyces
           verticillus]
          Length = 424

 Score = 72.3 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 46/219 (21%), Positives = 72/219 (32%), Gaps = 25/219 (11%)

Query: 186 CDKFCTFCV----VPYTR----GIEISRSLSQVVDEARKLIDNGVC------EITLLGQN 231
           C   C FC     +P  R      E S  ++ + D+ R               +   G  
Sbjct: 35  CSSKCHFCDWVTDIPVARLRGDSRERSPYVTALCDQIRFYGPQLTRLGYRPEVMYWGGGT 94

Query: 232 VNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL 291
                G     E       L    ++ GL R     S P D+    +     L   +  +
Sbjct: 95  PTRLTGD----EMTAVHQALDDAFDLTGL-RQWSVESTPNDLDPATLDTLRGLG--VTRV 147

Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351
            + VQS +   L+   R H+  +    +  +R    D   + D I GFPGE  + F  T+
Sbjct: 148 SVGVQSLNPYQLRKAGRAHSREQALAAVPLLRRAGID-EFNVDLIAGFPGEAVESFEETL 206

Query: 352 DLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER 390
             V  +       + Y     TP + M  Q+D      R
Sbjct: 207 RTVLALDPPHVSVYPYRA---TPKTVMAMQLDREFVEAR 242


>gi|182678425|ref|YP_001832571.1| radical SAM domain-containing protein [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182634308|gb|ACB95082.1| Radical SAM domain protein [Beijerinckia indica subsp. indica ATCC
           9039]
          Length = 531

 Score = 72.3 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 54/337 (16%), Positives = 112/337 (33%), Gaps = 38/337 (11%)

Query: 56  VNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGE 115
                 AD++ ++  HI      +    + R  + +          +VV+ G    A   
Sbjct: 70  TEDFLWADVVFVSGMHI----QRRQIEDIRRRAHAQGK--------VVVLGGPSVSACPH 117

Query: 116 EILRRSPIVNVVVGPQTYYRLPELLER--ARFGKRVVDTDYSVEDKFERLSIVDGGYNRK 173
                   ++V        +L  +L +  +R  ++VV    +  D  +            
Sbjct: 118 -YYPAFDYLHVGELGDATEKLVAILAKDISRPEQQVVLKTETRRDLADFPVPAYELAPID 176

Query: 174 RGVTAFLTIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVC-EITLLGQN 231
           R     +    GC   C FC +P   G     ++  Q++ E   L+  GV   I  +  N
Sbjct: 177 RYFLGSIQFSSGCPYTCEFCDIPGLYGRVARLKTAEQILTELDVLLARGVVGSIYFVDDN 236

Query: 232 VNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMS------DCLIKAHGDLD 285
           + A         +    +LL  L  I    R  Y  +   + +        ++    +  
Sbjct: 237 LVA--------NRHALKELLPHL--IAWQKRNGYPLAFACEATLNIARSPDILALMRE-- 284

Query: 286 VLMPYLHLPVQSGSDRILKSMNRRHTAY-EYRQIIDRIRSVRPDIAISSDFIVGFPGETD 344
                +   +++   + LK+++++H       + ID I      + + S  I+G   +T 
Sbjct: 285 AAFETIFCGIETPEPQALKAISKQHNMALPILEAIDTI--NHHGMEVVSGIILGLDTDTL 342

Query: 345 DDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +     +  V++               GTP  + LE+
Sbjct: 343 ETGGNLLAFVERSHIPLLTINLLQALPGTPLWDRLEK 379


>gi|188995358|ref|YP_001929610.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Porphyromonas gingivalis ATCC 33277]
 gi|188595038|dbj|BAG34013.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Porphyromonas gingivalis ATCC 33277]
          Length = 376

 Score = 72.3 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 41/234 (17%), Positives = 85/234 (36%), Gaps = 23/234 (9%)

Query: 186 CDKFCTFCVV-PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK 244
           C   C++C     T     S  +  ++ E              +   +      G     
Sbjct: 11  CATRCSYCDFYSQTNSALRSEYIQALIAEMSIRRAE-------VTDTIGTLYFGGGTPSL 63

Query: 245 CTFSDLLYSLSEIKGLVRL-----RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
            +  ++   + ++  L            ++P D++   ++    L +    + +  QS  
Sbjct: 64  LSPQEIGRIIEQVYRLFSFSSDAEITLEANPDDLNTSYVQELRTLPI--NRISMGAQSFH 121

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIA-ISSDFIVGFPGETDDDFRATMDLVDKIG 358
           D  L  +NRRH A +  + +D  R+    +  +S D I G PG+T   ++  +  V  + 
Sbjct: 122 DEDLHFLNRRHNARQVLEAVDTCRNA--GLTNLSIDLIYGLPGQTPARWQENISAVLALS 179

Query: 359 YAQAFSFKYSPRLGTPGSNML-----EQVDENVKAERLLCLQKKLREQQVSFND 407
            +   ++      GTP + +L      +VDE V  E    L+++L        +
Sbjct: 180 PSHLSAYHLIYEEGTPLTRLLHAGKVREVDEEVSLELFRMLREQLTGAGYEHYE 233


>gi|196166519|gb|ACG70826.1| SAM-dependent methyltransferase [Streptomyces fradiae]
          Length = 534

 Score = 71.9 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 50/264 (18%), Positives = 94/264 (35%), Gaps = 29/264 (10%)

Query: 110 AQAEGEEILRRSPIVNVV-----VGPQTYYRLPELLERARFGKRVVDTDYSVE-DKFERL 163
           A  + +  ++  P + ++      GP+     P L              +    +K+  +
Sbjct: 201 AWRDRDGKIQIKPELPLISSMRPEGPEQGKSSPMLSMAGELDHIPFPAWHHYNMEKYFEI 260

Query: 164 SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG-IEISRSLSQVVDEARKLIDN-G 221
                 Y     V   L    GC   CTFC   +  G     RS+  VV+E  +L D  G
Sbjct: 261 KAYQSPYTVGSRV-GQLYTSRGCTAHCTFCTTTHFWGQKLRRRSVDNVVNEVLRLRDEYG 319

Query: 222 VCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAH 281
           + E  +   N+                +L  +  E+ GL       +    M + L+   
Sbjct: 320 IDEFHIQDDNITNDMDHA--------RELFRAFKEV-GLPWATPQGTALWRMDEELLDLM 370

Query: 282 GDLDVLMPYLHLPVQSGSDRILK-SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFP 340
            +       +   ++SG  R+LK  + +         +I   RS+   + +   FI+G P
Sbjct: 371 AESGAY--QVTFAIESGVQRVLKDLIKKPLNLGRTSHLIKYARSL--GMHVHGFFIIGMP 426

Query: 341 ------GETDDDFRATMDLVDKIG 358
                 GE+ ++ +A+ D  ++ G
Sbjct: 427 PMFGNAGESIEEMQASYDYAEESG 450


>gi|209527699|ref|ZP_03276196.1| Radical SAM domain protein [Arthrospira maxima CS-328]
 gi|209491871|gb|EDZ92229.1| Radical SAM domain protein [Arthrospira maxima CS-328]
          Length = 528

 Score = 71.9 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 61/360 (16%), Positives = 122/360 (33%), Gaps = 41/360 (11%)

Query: 58  SMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEI 117
             + ADL++L    +      +    L +I+  K           V V G  A +   E+
Sbjct: 62  EWEWADLVILTAMIV------QKVDLLAQIQEAKRRGKP------VAVGGPYATSVPGEV 109

Query: 118 LRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGV- 176
                  + ++  +    LP+ +E    G+         +       +            
Sbjct: 110 AA---EADYLILDEGEITLPQFVEAINRGETSGTFRSPEKADVSTTPVPRYDLLELDAYD 166

Query: 177 TAFLTIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW 235
           +  +    GC   C FC +    G +  +++  Q++ E   L + G      +  +    
Sbjct: 167 SMSVQFSRGCPFQCEFCDIIVLYGRKPRTKNPEQLLKELDYLYELGWRRGVFMVDD---- 222

Query: 236 RGKGLDGEKCTFSDLLYSLS--EIKGLVRLRYTTSHPRDM--SDCLIKAHGDLDVLMPYL 291
                 G K     LL +L   +I+     R+ T    D+   + L+    D +     +
Sbjct: 223 ---NFIGNKRNVKLLLKALKTWQIEHQYPFRFNTEASVDLAADEELMDMMVDCN--FDAV 277

Query: 292 HLPVQSGSDRILKSMNRR-HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
            L +++  +  L    +  +T     + +D+I  +R  +   + FI+GF GE        
Sbjct: 278 FLGIETPDEASLALTKKFQNTRSSLSESVDKI--IRAGLRPMAGFIIGFDGEKSGAASRV 335

Query: 351 MDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACV 410
           ++ VD+ G   A          T   + LE      K  RLL  ++ + +     N   +
Sbjct: 336 IEFVDQAGIPTAMLGMLQALPNTGLWHRLE------KEGRLLADRENISQHAT--NQTML 387


>gi|220927941|ref|YP_002504850.1| radical SAM protein [Clostridium cellulolyticum H10]
 gi|219998269|gb|ACL74870.1| Radical SAM domain protein [Clostridium cellulolyticum H10]
          Length = 575

 Score = 71.9 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/281 (13%), Positives = 94/281 (33%), Gaps = 29/281 (10%)

Query: 92  NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA-------- 143
               K   D  +++ G       ++++  +  ++ V+  +     P LL+          
Sbjct: 75  KEIKKLLPDCRIILGGPEVSYSSKKVMEENQYIDFVISGEGEDVFPALLKDLCDGTENYK 134

Query: 144 --------RFGKRVVDTDYSVEDKFERLSIV--DGGYNRKRGVTAFLTIQEGCDKFCTFC 193
                     G  + +  +++  + +R+     D           +     GC   C++C
Sbjct: 135 TLPGLAYRMSGSIICNEGFNLVYELDRIPSPYTDELMKTTLNRIVYYESSRGCPFSCSYC 194

Query: 194 VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS 253
           +     G     SL +V  +  ++++     I  + +  N          K    ++L  
Sbjct: 195 ISSTFNG-VRFFSLERVKRDIYRILEYKPRLIKFVDRTFNCH--------KERAKEILRF 245

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
           L+ +       +  +        ++            L + +Q+ + + LK ++R     
Sbjct: 246 LASLNCETVFHFEAAADL-FDSEMLHILRKAPKGRIQLEIGIQTINTQTLKEIDRITDID 304

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
              + + +I S   +I +  D I G P E    F+ + + V
Sbjct: 305 LLTENVKKILSG-GNIHVHLDLIAGLPYEDFKSFKKSFNHV 344


>gi|75907481|ref|YP_321777.1| radical SAM family protein [Anabaena variabilis ATCC 29413]
 gi|75701206|gb|ABA20882.1| Radical SAM [Anabaena variabilis ATCC 29413]
          Length = 529

 Score = 71.9 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 46/305 (15%), Positives = 104/305 (34%), Gaps = 36/305 (11%)

Query: 79  KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVV---------- 128
           +++  LG I+       K   D   VV G       E++ +  P   ++           
Sbjct: 125 ELWRNLGLIKRGLKRAAKYHADARAVVGGGAVSVFYEQLGKSLPNGTIISVGEGETLLEK 184

Query: 129 ---GPQTYYRLPELLERARFGKRVVDTDYSVEDK-------FERLSIVDGGYNRKRGVTA 178
              G +       ++  A+  +R++    +  +K        E +      Y +++    
Sbjct: 185 FLSGKEFRDERCYVVGEAKPRQRLIHEQPTPLEKSACNYDYIEAIWPEFNYYLQEQDFYI 244

Query: 179 FLTIQEGCDKFCTFCVVPYTRGIEISR-SLSQVVDEARKLIDNGVCEITLL-GQNVNAWR 236
            +  + GC   C +CV     G ++      +VV E R+L + G+        Q + A +
Sbjct: 245 GVQTKRGCPHNCCYCVYTVVEGKQVRINPADEVVAEIRQLYNRGIRNFWFTDAQFIPARK 304

Query: 237 GKGLDGEKCTFSDLLYSLSEI--KGLVRLRY-TTSHPRDMSDCLIKAHGDLDVLMPYLHL 293
                       D +  L +I   G+  + +       +++  L          M Y  +
Sbjct: 305 FID---------DAVELLQKIIDSGMTDIHWAAYIRADNLTPELCDLMAKTG--MNYFEI 353

Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
            + SGS  +++ M   +      Q    +++   +  +S ++      E  +  R T+  
Sbjct: 354 GITSGSQELVRKMRMGYNLRTVLQNCRDLKAAGFNDMVSVNYSFNVIDERPETIRQTIAY 413

Query: 354 VDKIG 358
             ++ 
Sbjct: 414 HRELE 418


>gi|225018478|ref|ZP_03707670.1| hypothetical protein CLOSTMETH_02425 [Clostridium methylpentosum
           DSM 5476]
 gi|224948749|gb|EEG29958.1| hypothetical protein CLOSTMETH_02425 [Clostridium methylpentosum
           DSM 5476]
          Length = 622

 Score = 71.9 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 43/291 (14%), Positives = 103/291 (35%), Gaps = 24/291 (8%)

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +  I+ L     K   +  +++ G       ++IL++ P  + V+  +      +L+   
Sbjct: 111 IELIKQLAGELKKVLPETRILLGGPEVSYNAQQILQQVP-ADFVLRGEGEASFAQLIGAI 169

Query: 144 -------------RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190
                           + ++    +V    E +  V       +    +     GC   C
Sbjct: 170 PSEDFSEVAGLTYLSEQGIISNPAAVPLPMEEIPFVYSDLEEFKNRILYYESSRGCPYRC 229

Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDL 250
            +C+    RG      L +V  + +  +D+ V ++  + +  N          +     +
Sbjct: 230 GYCLSSIERG-VRFLPLERVFHDLQFFLDHKVRQVKFVDRTFNC--------NRSHALAI 280

Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
              L E    V   +   +   +    +     +   +    + +Q+ + + L  ++R++
Sbjct: 281 WKFLDEHDNGVTNFHFEINADTLDKESVNFLTTVRRGLFQFEIGIQTTNQQTLGEIHRKN 340

Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
                 +I+ R++S R +I +  D I G PGE  + F  + + V  +   Q
Sbjct: 341 DFDRISRIVRRLQS-RQNIHLHLDLIAGLPGEGYESFCKSFNDVYALCPDQ 390


>gi|189423866|ref|YP_001951043.1| radical SAM protein [Geobacter lovleyi SZ]
 gi|189420125|gb|ACD94523.1| Radical SAM domain protein [Geobacter lovleyi SZ]
          Length = 489

 Score = 71.9 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 48/266 (18%), Positives = 89/266 (33%), Gaps = 35/266 (13%)

Query: 130 PQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTI------- 182
           P  +YR  ELL        + D D  +        ++     R      F  I       
Sbjct: 159 PGLWYREGELLRSTPRAPLISDLDRYL--PIAAWDLLPMHVYRAHNWHCFDDIGHRSPYG 216

Query: 183 ----QEGCDKFCTFCVV--PYTRGIEISRSLSQVVDEARKLI-DNGVCEITLLGQNV--- 232
                 GC   C FC +  P+ +     RS  +VV+E   L  D GV  + ++ +     
Sbjct: 217 AVYTSLGCPYNCIFCCINAPFGKPGIRYRSPERVVEEIALLANDYGVKNLKIVDELFVLK 276

Query: 233 NAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLH 292
                  +DG      DL              +  +    +    +       +   +L 
Sbjct: 277 EQHYMAIVDGIIERGLDL------------NIWAYARVDTIKTANLARMKQAGI--NWLA 322

Query: 293 LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352
           L ++S S  +    ++R  A + ++++  IR     I I  +FI G P +T +    T+ 
Sbjct: 323 LGIESASPDVRDGADKRMQARDIKEVVRSIREQ--GIRIIGNFIFGLPDDTRETMEETLQ 380

Query: 353 LVDKIGYAQAFSFKYSPRLGTPGSNM 378
           L  ++       +      G+   ++
Sbjct: 381 LAMELNCEFINFYCAMAYPGSRLYDL 406


>gi|237739285|ref|ZP_04569766.1| radical SAM domain-containing protein [Fusobacterium sp. 2_1_31]
 gi|229422893|gb|EEO37940.1| radical SAM domain-containing protein [Fusobacterium sp. 2_1_31]
          Length = 440

 Score = 71.9 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 64/349 (18%), Positives = 127/349 (36%), Gaps = 45/349 (12%)

Query: 39  YDSLRMEDMFFSQGYERVN------SMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92
           Y++  +      +G E  +      S D  DLI ++   +   +         R + +  
Sbjct: 40  YNTEII---LVDEGVEEYDATSSKYSDDKFDLICIS--AVISAS--------RRAKEISK 86

Query: 93  SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDT 152
                G    +   G  A    +E L     V  + GP      P  ++     K   + 
Sbjct: 87  FWKDRGAYTQI--GGHYATVLSDEALEFFDTV--IKGPAEI-AFPTFIKDFVEEKPKREY 141

Query: 153 DYSVEDKFERLSIVDGGYNRKRGVTAFLTI--QEGCDKFCTFC-VVPYTRGIEISRSLSQ 209
              V + FE   +       K+   +F TI    GC   CT+C V     G    +++  
Sbjct: 142 FELVGNDFEYKPLNRKLLTNKKYYKSFGTIVANNGCPNKCTYCSVTKMYSGKNQLKNIDF 201

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSH 269
           VV E +    N   +      N  A +   ++        L+  L ++K    +++T S 
Sbjct: 202 VVSEIK---SNKHKKWVFYDPNFLADKSYAIN--------LMNELKKLK----IKWTASA 246

Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR-HTAYEYRQIIDRIRSVRPD 328
             ++ + +       +     L + ++S     L  +N+  +   EY++++  I+S    
Sbjct: 247 TINIGNDIKMLQLMKEAGCIGLVIGLESFIQENLNGVNKGFNNVKEYKRLVSTIQSY--G 304

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
           I++ S  ++G   +T +  R   D++++IG         +P  GTP   
Sbjct: 305 ISVLSTLMIGMETDTVESIRQIPDIIEEIGVDVPRYNILTPYPGTPFYE 353


>gi|116625679|ref|YP_827835.1| radical SAM domain-containing protein [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116228841|gb|ABJ87550.1| Radical SAM domain protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 484

 Score = 71.9 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 54/299 (18%), Positives = 92/299 (30%), Gaps = 36/299 (12%)

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           L +   +  +  ++   + +   G  A    E  L     V+ VV  Q    L ELL   
Sbjct: 71  LRQAVAVSKAVREKYPRVPIAWGGYFASLYTEASLNAR-YVDFVVKGQGEDTLLELLAAL 129

Query: 144 RFGKRVVDT-----------------------DYSVEDKFERLSIVDGGYNRKRGV-TAF 179
           R  +   D                        D      + RL           G  TA 
Sbjct: 130 RGPRNFQDVRGMSFKDQFGLHVHTAERPLKAPDDFPWPPYHRLDPAKYIARTFLGTRTAV 189

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
                GC   C FC V      E     ++     R L           G N   +    
Sbjct: 190 HQASIGCPFRCNFCGVVPVYDREKMEPAARTASILRYLQAQ-------YGVNAVQFYDNN 242

Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
               +    +L   ++ +                SD  ++   +   +M  +   V+SG+
Sbjct: 243 FFLREEHARELAERIAPLNLRWWCEARVDIVLGYSDDTLRKLREAGCVM--IFFGVESGN 300

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           D  L++M ++ T+ +  ++  RIR    DI      I G P + + D  A +  V ++ 
Sbjct: 301 DVALRNMKKQLTSEQTLELARRIREF--DIVPEYSMIFGNPADAERDLEANIAFVRRVK 357


>gi|323698696|ref|ZP_08110608.1| Radical SAM domain protein [Desulfovibrio sp. ND132]
 gi|323458628|gb|EGB14493.1| Radical SAM domain protein [Desulfovibrio desulfuricans ND132]
          Length = 603

 Score = 71.9 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/246 (15%), Positives = 82/246 (33%), Gaps = 29/246 (11%)

Query: 162 RLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI-EISRSLSQVVDEARKLIDN 220
                         +   +T   GC   C+FC +   +G    SRS + ++ E R + + 
Sbjct: 303 PHPSYRQRIPAAEMIRTSVTTHRGCSGGCSFCTLALHQGRTIRSRSKASILKEVRAITEV 362

Query: 221 GVCEITLLGQ-----------------------NVNAWRGKGLDGEKCTFSDLLYSLSEI 257
                ++                           +     K     +  F  LL S++++
Sbjct: 363 KGWTGSISDVGGPSANMWGAHCASDQSACERASCLTPRICKHYRVAQRDFVSLLRSVADV 422

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDV--LMPYLHLPVQSGSDRILKSMNRRH--TAY 313
             +  +R  +    D++   ++A   +    +     +  +   D +LK M +    T  
Sbjct: 423 NSVEHVRVASGWRIDLAVTDMQALTTMIREFVGGQAKVAPEHQVDHVLKLMRKPGFETFE 482

Query: 314 EYRQIIDR-IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
            +  + D+  +       +    +  FPG T++D R+    +D  G+       + P  G
Sbjct: 483 TFLDLFDKESKKAGKKQYVIPYLMSAFPGCTEEDMRSLRHWLDARGWKPEQVQCFIPLPG 542

Query: 373 TPGSNM 378
           T  + M
Sbjct: 543 TAAAAM 548


>gi|194335375|ref|YP_002017169.1| Radical SAM domain protein [Pelodictyon phaeoclathratiforme BU-1]
 gi|194307852|gb|ACF42552.1| Radical SAM domain protein [Pelodictyon phaeoclathratiforme BU-1]
          Length = 483

 Score = 71.9 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 50/326 (15%), Positives = 109/326 (33%), Gaps = 33/326 (10%)

Query: 53  YERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQA 112
           +E        DL+ +    ++   A K ++   ++R+   + +  G  + +    C    
Sbjct: 77  FEEFPFDKTWDLVGI---SVQTGMARKAFTLADQLRSRGIAVVLGGAHVTLFTDSC---- 129

Query: 113 EGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK-RVVDTDYSVEDKFERLSIVDGGYN 171
                    P  +V+V  +      E+L      + + +    +  D      +      
Sbjct: 130 --------KPHADVLVLGEADDLWKEVLTDLTTERLKPLYQSANFPDLNISRPVSKRSLV 181

Query: 172 RKRGVTA-FLTIQEGCDKFCTFCVVPYTRGI-EISRSLSQVVDEARKLIDNGVCEITLLG 229
           + R  T   +    GC   C FC V    G     R+++ VV E  +   +       + 
Sbjct: 182 KNRYFTTNLIQTGRGCQYNCDFCNVHLLNGHTLRRRAIADVVSEVERFKLHDQRIFFFVD 241

Query: 230 QNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMP 289
            ++NA        +     +L   L  I   +R    ++        L++          
Sbjct: 242 DSINA--------DPLYAQELFRQL--IPLKIRWFGQSTTTLGQQHELLETFARSG--CQ 289

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR-PDIAISSDFIVGFPGETDDDFR 348
            L + ++S   +   +  +        +++  I+++R   I++   FI G  G+T D   
Sbjct: 290 ALLVGIESIEAKSRHAHKKNQNRAG--ELVCAIKNIREAGISLYGSFIYGLDGDTLDTPA 347

Query: 349 ATMDLVDKIGYAQAFSFKYSPRLGTP 374
           A +D +++            P  GT 
Sbjct: 348 AILDFINQTKLDVPGINILRPIPGTK 373


>gi|329934630|ref|ZP_08284671.1| coproporphyrinogen III oxidase [Streptomyces griseoaurantiacus
           M045]
 gi|329305452|gb|EGG49308.1| coproporphyrinogen III oxidase [Streptomyces griseoaurantiacus
           M045]
          Length = 410

 Score = 71.9 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 49/242 (20%), Positives = 87/242 (35%), Gaps = 27/242 (11%)

Query: 186 CDKFCTFCVV-PYTRGIEI-------SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG 237
           C   C +C    YT            SR      + A  LID       +LG +    R 
Sbjct: 39  CATRCGYCDFNTYTATELRGTGGVLASRD-----NYADTLIDEVRLARKVLGDDPREVRT 93

Query: 238 KGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDC-------LIKAHGDLDVLMPY 290
             + G   T  D    L  + G VR  +  +   +++                 +     
Sbjct: 94  VFVGGGTPTLLDAAD-LVRMLGAVREEFGLAADAEITTEANPESVDPAYLAALREGGFNR 152

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
           +   +QS    +LK ++R HT     + +   R+   +  ++ D I G PGE+D+D+RA+
Sbjct: 153 ISFGMQSARQHVLKVLDRTHTPGRPERCVAEARAAGFE-HVNLDLIYGTPGESDEDWRAS 211

Query: 351 MDLVDKIGYAQAFSFKYSPRLGT--PGSNMLEQVD---ENVKAERLLCLQKKLREQQVSF 405
           +D     G     ++      GT         +V    ++V A+R L  ++ L      +
Sbjct: 212 LDAALGAGPDHVSAYALIVEEGTRLAARIRRGEVPMTDDDVHADRYLIAEEVLSSAGYDW 271

Query: 406 ND 407
            +
Sbjct: 272 YE 273


>gi|288560799|ref|YP_003424285.1| magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative
           cyclase BchE [Methanobrevibacter ruminantium M1]
 gi|288543509|gb|ADC47393.1| magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative
           cyclase BchE [Methanobrevibacter ruminantium M1]
          Length = 503

 Score = 71.9 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 39/216 (18%), Positives = 76/216 (35%), Gaps = 18/216 (8%)

Query: 162 RLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI--EISRSLSQVVDEARKLID 219
            L+  D  Y   +     +    GC   C FC  P T G     +RS++ + DE   ++ 
Sbjct: 204 YLNFDDYAYAFAQKPMIQIVSSRGCPNQCNFCSYPSTMGGRIYRTRSVTDLADEFEYILK 263

Query: 220 N--GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCL 277
               + EI +                +    +    +  IK  ++  ++ +   D++   
Sbjct: 264 ELPEIKEIFIEDDTFTV--------NQPRVIEFCDEI--IKRGLKPIWSCNTRVDLTYET 313

Query: 278 IKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIV 337
           +K   D       L    +SG+  +L    +  T  + R   +  R +  DI +   F++
Sbjct: 314 MKKMKDAG--CRLLVCGYESGNQDVLNETKKGITLEQSRAFAENARKL--DIKVFGCFMI 369

Query: 338 GFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
           G  G++ +    T      +     F  +  P  GT
Sbjct: 370 GLTGDSLETIDETYKFAQSVYPDMCFFQQAVPFPGT 405


>gi|218782145|ref|YP_002433463.1| radical SAM domain protein [Desulfatibacillum alkenivorans AK-01]
 gi|218763529|gb|ACL05995.1| Radical SAM domain protein [Desulfatibacillum alkenivorans AK-01]
          Length = 450

 Score = 71.9 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 41/196 (20%), Positives = 72/196 (36%), Gaps = 14/196 (7%)

Query: 183 QEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLD 241
             GC   C FC +         +S+ + +DE    +   G+  +  +       +   LD
Sbjct: 206 SRGCPGKCNFCYMGMYGRRVRRKSVDRFLDETEWAVRKMGLKNVYFMDLEFAINKRFVLD 265

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
                F   L      +GL+      +   DM + + +A          +H  V++G+DR
Sbjct: 266 -----FCQGLED----RGLILNWCCQTRVTDMDEEVAQAMAQAG--CSLIHFGVEAGTDR 314

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
           ILK   +     +  + +   +S    I  +     GFPGE D +  AT+ L   +    
Sbjct: 315 ILKQTGKGILVKDCYKAVRLCKSF--GIRTALFMNFGFPGEHDYEMEATIKLALNLDPDY 372

Query: 362 AFSFKYSPRLGTPGSN 377
           A      P  GT  ++
Sbjct: 373 AAFHLIVPFPGTALAD 388


>gi|283833536|ref|ZP_06353277.1| BchE/P-methylase family protein [Citrobacter youngae ATCC 29220]
 gi|291071206|gb|EFE09315.1| BchE/P-methylase family protein [Citrobacter youngae ATCC 29220]
          Length = 437

 Score = 71.9 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 52/292 (17%), Positives = 96/292 (32%), Gaps = 27/292 (9%)

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R   L       G    VVV G  A    EE  + +  V   +G         L + A  
Sbjct: 75  RAWFLCAHWRARGAH--VVVGGAHATLVPEEASQHADTV--FIGLAERTWPQFLYDFAAG 130

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE-IS 204
             +         D     + +      +      +    GC   C FC + +  G   ++
Sbjct: 131 RPQAFYRHEPQRDCLPMPTPLRELLAPRYMKIPTIVANRGCRLNCDFCSIQHQWGKRGLT 190

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           R + +V+ E R     G      L  N+          E+     L  +L+ +     +R
Sbjct: 191 RPIEEVITEIRSH---GAKRWIFLDPNI--------YSERAYSLALFNALTPL----NIR 235

Query: 265 YTTSHP--RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA-YEYRQIIDR 321
           ++            + +A          L L +++ S   ++ + +      EYR+ I +
Sbjct: 236 WSGLSTLSIVDDGEIFEAMKRSG--CEGLLLGLENLSQETMQQIGKPTNRVSEYRRQISK 293

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
           +R     IA    F++GF  +T+     T+  +  +G         +P  GT
Sbjct: 294 LREN--GIASLGCFVLGFDEDTEQSIHQTIKDIPALGLDLVRFSVLTPLPGT 343


>gi|148262207|ref|YP_001228913.1| radical SAM domain-containing protein [Geobacter uraniireducens
           Rf4]
 gi|146395707|gb|ABQ24340.1| Radical SAM domain protein [Geobacter uraniireducens Rf4]
          Length = 625

 Score = 71.9 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 32/193 (16%), Positives = 63/193 (32%), Gaps = 14/193 (7%)

Query: 181 TIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL 240
            +  GCD  C FC            SL ++ +E +    + V ++ +L    N       
Sbjct: 187 QLSRGCDFACDFCFDHKGGAGVRRFSLERIAEELKLFARSRVTQVVVLDSTFNQDM---- 242

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300
                   ++L  +  I   +   +       +   L +       +   L + +QS   
Sbjct: 243 ----KRAKEILRLIKRIAPHIHFHFEV-RSEFIDQELARLFAQ---ITCSLQIGLQSADP 294

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
            I + + R     ++   +  +           D I G PG+T   F A++D   ++   
Sbjct: 295 LIQRKVGRIFNPADFLDKVALLNDA--GAVFGFDLIYGLPGDTLKGFAASLDFALQLYPN 352

Query: 361 QAFSFKYSPRLGT 373
               F  +   GT
Sbjct: 353 HLDIFPLAVLPGT 365


>gi|283853821|ref|ZP_06371042.1| Radical SAM domain protein [Desulfovibrio sp. FW1012B]
 gi|283570790|gb|EFC18829.1| Radical SAM domain protein [Desulfovibrio sp. FW1012B]
          Length = 507

 Score = 71.9 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 65/378 (17%), Positives = 120/378 (31%), Gaps = 50/378 (13%)

Query: 57  NSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEE 116
             +  AD++ L+   ++E  A +V +    +               VV  G    A+ E 
Sbjct: 61  EDLAWADMVFLSAMAVQEAGAREVIARSRALGK------------RVVAGGPAFTAQPE- 107

Query: 117 ILRRSPIVNVVVGPQTYYRLPELLER-ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRG 175
              R   V+  V  +    LP  LE  AR   + +       D            + +  
Sbjct: 108 ---RYEGVDHFVLGEAETTLPPFLEDLARGAPKPLYAATDRPDIVNTPIPQWDLIDFRDY 164

Query: 176 VTAFLTIQEGCDKFCTFCVVPYTRG-IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA 234
           VT  +    GC   C FC +    G     ++  Q++ E   L D G      +  +   
Sbjct: 165 VTLSVQYSRGCPFDCEFCDIVVLNGHRPRVKAAGQMLLEIGSLYDAGWRGPVFIVDD--- 221

Query: 235 WRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM----SDCLIKAHGDLDVLMPY 290
                  G   +    L  L + +      +       +       L++   D +     
Sbjct: 222 ----NFIGNIASVKQFLPRLIDWQVPHGYPFKFMTEASINLAQDRELVRLLRDAN--FHK 275

Query: 291 LHLPVQSGSDRILKSMNRRHT-AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           + + +++ S   L+   ++   A  + Q I  +      + +   FIVGF  +T+  F  
Sbjct: 276 IFIGIETPSTDSLRECGKKQNMAANFSQAIKTLHQN--GLQVMGGFIVGFDSDTEGIFEQ 333

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDAC 409
            ++ + KIG   A     S    T                RL    + L E      D  
Sbjct: 334 QINFIQKIGVVTAMVGILSAMPKTRL------------WRRLKAENRLLGEATGENTDGS 381

Query: 410 VG----QIIEVLIEKHGK 423
           +        E+LI+ + +
Sbjct: 382 LNFIPVMRREILIDGYKR 399


>gi|225027588|ref|ZP_03716780.1| hypothetical protein EUBHAL_01845 [Eubacterium hallii DSM 3353]
 gi|224955104|gb|EEG36313.1| hypothetical protein EUBHAL_01845 [Eubacterium hallii DSM 3353]
          Length = 385

 Score = 71.9 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 43/243 (17%), Positives = 83/243 (34%), Gaps = 22/243 (9%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C K C +C        E  R +       + LI+       LL ++  A R   + G   
Sbjct: 17  CIKKCNYCDFLSFPSNEERREI-----YVQSLINEIEQTGKLLDKDAYAVRSIFIGGGTP 71

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY-------LHLPVQSG 298
           +       +  I   VR  +      +++          + +  Y         + +QS 
Sbjct: 72  SL-LSGKQIERIMLAVRNAFFIMEEAEITMETNPGTLTKENVFSYKKAGVNRFSMGLQSA 130

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
            D  L  + R HT  E+ +  +  R    +  I+ D + G PG+T   +R T++ V  + 
Sbjct: 131 DDACLHLLGRIHTWEEFLKSYELARKAGFE-NINVDLMSGLPGQTVSIYRRTLEKVMALQ 189

Query: 359 YAQAFSFKYSPRLGTP---GSNMLEQVDENVKAERLLCLQ-KKLREQQVSFND----ACV 410
                ++      GTP      + +++ +      +  L  + L E      +    A  
Sbjct: 190 PEHISAYSLILEEGTPFGESEEIQKKIPDEETDREMYQLTKEVLAENGYERYEISNYARK 249

Query: 411 GQI 413
           G+ 
Sbjct: 250 GKE 252


>gi|295092111|emb|CBK78218.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Clostridium cf. saccharolyticum K10]
          Length = 462

 Score = 71.9 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 44/235 (18%), Positives = 86/235 (36%), Gaps = 17/235 (7%)

Query: 153 DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVD 212
           +Y ++   E+ +I     +R   +  ++ I   C + C +C        E  RSL  V  
Sbjct: 4   NYGMKQNREKGAIQMETGSRPIPLELYIHIPF-CIRKCAYCDFLSFPAGEEERSL-YVEQ 61

Query: 213 EARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
            AR++ + G      + + V         G           +  I   VR  +  S   +
Sbjct: 62  LAREIEEAGAAFGEYVAETV-------FIGGGTPSVLEGAQIGRIMDAVRESFHLSEEAE 114

Query: 273 MSDCLIKAHGDLDVLMPY-------LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
           ++  +       + L  +       L L +QS  +R L+ + R HTA ++ +     R  
Sbjct: 115 ITMEVNPGTASPEKLRSWRRSGINRLSLGLQSAQNRELRYLGRIHTAEDFLESFHAAREA 174

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
             +  I+ D +   PG+T++ +  T+  V  +      ++      GTP      
Sbjct: 175 GFE-NINVDLMSALPGQTEEAWEDTLKKVLSLMPEHISAYSLIIEEGTPFYEKYG 228


>gi|145220258|ref|YP_001130967.1| magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase
           [Prosthecochloris vibrioformis DSM 265]
 gi|145206422|gb|ABP37465.1| Magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase
           [Chlorobium phaeovibrioides DSM 265]
          Length = 619

 Score = 71.9 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 60/307 (19%), Positives = 96/307 (31%), Gaps = 34/307 (11%)

Query: 88  RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL------- 140
           + LK +RI       VVV G    A   E+L+   I  VV G         +L       
Sbjct: 82  QALKLARIAREAGAFVVVGGFHPTALPLEVLQEGDIDAVVRGEGEESFRELVLYGPSRSV 141

Query: 141 ---ERARFGKRVVDTDYSVEDKFE-------RLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190
                   G  V +    V    +        L     G    R     +    GC   C
Sbjct: 142 RGLAFREQGTVVCNEPRPVIPDIDTIAFPLRSLRPNRYGEKGTRYFIDTIYTSRGCPWSC 201

Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDL 250
           +FC      G    R+   VV+E   L D  + ++  +            D    T    
Sbjct: 202 SFCANGQMHGKWRPRTAENVVEEIALLHDPKMKKLLKI-----------WDANFLTSIRR 250

Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL----MPYLHLPVQSGSDRILKSM 306
              + ++     L          +  L++A   L  L    +  + + ++S +   L+ M
Sbjct: 251 AERICDLMIERGLTNFRIMTETRAADLVRASRILPKLKAVGLDKVGIGIESPNPETLRLM 310

Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
           N+ +   +  + +   R     I     FI+G   ET  D  A       +G  QA    
Sbjct: 311 NKNNAPDDVEKAVALCRK--HGIGTEGYFILGCLNETAADSFAYPAYARSLGLGQALFMV 368

Query: 367 YSPRLGT 373
            +P  GT
Sbjct: 369 MTPYPGT 375


>gi|283796181|ref|ZP_06345334.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Clostridium sp. M62/1]
 gi|291076399|gb|EFE13763.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Clostridium sp. M62/1]
          Length = 465

 Score = 71.9 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 43/235 (18%), Positives = 86/235 (36%), Gaps = 17/235 (7%)

Query: 153 DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVD 212
           +Y ++   E+ +I     +R   +  ++ I   C + C +C        E  RSL  V  
Sbjct: 4   NYGMKQNREKGAIQMETGSRPIPLELYIHIPF-CIRKCAYCDFLSFPAGEEERSL-YVEQ 61

Query: 213 EARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
            AR++ + G      + + V         G           +  I   +R  +  S   +
Sbjct: 62  LAREIEEAGAAFGEYVAETV-------FIGGGTPSVLEGAQIGRIMDAMRESFHLSEEAE 114

Query: 273 MSDCLIKAHGDLDVLMPY-------LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
           ++  +       + L  +       L L +QS  +R L+ + R HTA ++ +     R  
Sbjct: 115 ITMEVNPGTASPEKLRSWRRSGINRLSLGLQSAQNRELRYLGRIHTAEDFLESFHAAREA 174

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
             +  I+ D +   PG+T++ +  T+  V  +      ++      GTP      
Sbjct: 175 GFE-NINVDLMSALPGQTEEAWEDTLKKVLSLMPEHISAYSLIIEEGTPFYEKYG 228


>gi|285808542|gb|ADC36064.1| Fe-S protein radical SAM family protein [uncultured bacterium 213]
          Length = 531

 Score = 71.9 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 60/376 (15%), Positives = 114/376 (30%), Gaps = 72/376 (19%)

Query: 61  DADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRR 120
           +  ++ L+T   +   A  +   +  +R              +VV G       E     
Sbjct: 64  EPHVVGLSTMTFQRGTALTIARVVRALR----------PSARIVVGGYDPSLAPEA-YES 112

Query: 121 SPIVNVVVGPQTYYRLPELLERARFG---------------------------------- 146
            P V+ +V  +  + L ELL     G                                  
Sbjct: 113 CPEVDFIVRGEGEHTLCELLRAMEEGPGPDPGATGGESSRFSGIPGLSYRTAGGFVRNVP 172

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS-R 205
           ++V+    S     +R + V GGY         +    GC   C+FC +   RG      
Sbjct: 173 RQVIPLASSALRLPDRGARVLGGYTMLGRGVDVVETSRGCTFDCSFCSIIEMRGRNFHPY 232

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            + +V+ +      +G   I  +  N+          +   F  L  ++ +         
Sbjct: 233 PIDRVLADIADARRHGAEAIFFVDDNIT--------LDVDRFEALCQAIIDAGFDDADYI 284

Query: 266 TTSHPRDMSDC---LIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR---HTAYEYRQI- 318
             +    ++     L            Y+ L +++  D  L  +  R       + R I 
Sbjct: 285 VQAMTAPIAQHGARLAPLMRKAG--FRYVFLGIENILDEDLGFLRARAKNARREKGRTIG 342

Query: 319 ---IDRI-RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
              I+ I    R  + +    IVG P +T +   A ++   +      +    +P   TP
Sbjct: 343 NASIEAIAHLHRHGMYVVGGLIVGNPSDTRESIEANLEFARRY-VDWPYIQHPTPYPRTP 401

Query: 375 GSNMLEQ----VDENV 386
            +    +    VDE+V
Sbjct: 402 MTRDFRERGLIVDEDV 417


>gi|70607321|ref|YP_256191.1| hypothetical protein Saci_1585 [Sulfolobus acidocaldarius DSM 639]
 gi|68567969|gb|AAY80898.1| conserved Archaeal protein [Sulfolobus acidocaldarius DSM 639]
          Length = 489

 Score = 71.9 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 50/301 (16%), Positives = 105/301 (34%), Gaps = 22/301 (7%)

Query: 73  REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAE-GEEILRRSPIVNVVVGPQ 131
           +E    K +  L R   +K ++ +    + ++  G         E + +   ++ +V  +
Sbjct: 104 KEPINYKSFQELIRRPEIKKAKER---GMKIIAGGPSVWQWLWREDMIQDVQIDTLVDGE 160

Query: 132 TYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCT 191
               + +L +     + +    Y   D  E  S+ +    +   V   + I  GC + C 
Sbjct: 161 ADRFIVKLAQMIMDNEPLPKYVYIGAD--EAPSVDEISEIKGASVNGLIEIMRGCARSCR 218

Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLL 251
           FC V           L ++  E    + NGV    +   +V  +   G+         L 
Sbjct: 219 FCSVTL--RPTRYYPLDKIEKELLVNVKNGVRHGVIHSDDVLFYGATGIFPRPEPLIKLH 276

Query: 252 YSLSEIKG---LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY-----LHLPVQSGSDRIL 303
             + +                  +    LI    ++           + + +++GS R+ 
Sbjct: 277 KLVKKYYKTIAWSHASLAAIRYSEEKYGLISKLSEIIYDNESQKYLGVEVGIETGSSRLA 336

Query: 304 KSMN----RRHTAYEYRQIIDRIRSVRPD--IAISSDFIVGFPGETDDDFRATMDLVDKI 357
           K +           EY + +++   +  +  I  +   IVG P ET+DD   T++LVD +
Sbjct: 337 KEIMPAKSAPFKIEEYPETVEQAFKIMHENRIIPAGTMIVGLPEETEDDVYKTIELVDNL 396

Query: 358 G 358
            
Sbjct: 397 R 397


>gi|104783855|ref|YP_610353.1| hypothetical protein PSEEN4925 [Pseudomonas entomophila L48]
 gi|95112842|emb|CAK17570.1| putative Fe-S oxidase, SAM-binding [Pseudomonas entomophila L48]
          Length = 765

 Score = 71.9 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 62/391 (15%), Positives = 125/391 (31%), Gaps = 65/391 (16%)

Query: 57  NSMDDADLI-VLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGE 115
              ++A ++ +L++  +     EK    L     ++N  +       V+           
Sbjct: 268 EDPNEAKVVQILDSPSVT---REKSVIRLPSFEKVRNDPVLYAHANRVLHLE-TNPGNAR 323

Query: 116 EILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNR--- 172
            ++++   V+V   P       E            + DY     + R+     G  R   
Sbjct: 324 ALVQKHGEVDVWFNPPPIPMTTE------------EMDYVFGMPYARVPHPAYGKERIPA 371

Query: 173 KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDN--GVCEIT--L 227
              +   + I  GC   CTFC +    G  I +RS   ++ E  ++ D   G   +   L
Sbjct: 372 YEMIRFSVNIMRGCFGGCTFCSITEHEGRIIQNRSHDSIIREIEEMRDKVPGFTGVVSDL 431

Query: 228 LGQNVNAWR----------------------GKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            G   N +R                       + L+ +  +  +L      + G+ ++  
Sbjct: 432 GGPTANMYRIACKSHDIEKHCRKPSCVFPGICENLNTDHSSLIELYRKARALPGVKKILI 491

Query: 266 TTSHPRDMSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRR--HTAYEYRQIIDR 321
            +    D++    +   +L    +  YL +  +      L  M +    T   ++++ ++
Sbjct: 492 ASGLRYDLAVESPEYVRELVTHHVGGYLKIAPEHTERGPLDKMMKPGIGTYDRFKRMFEK 551

Query: 322 I-RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY--AQAFSFKYSPRLGTPGSNM 378
             +    +  +   FI   PG TD+D       +   G+   Q  +F  SP         
Sbjct: 552 FSKEAGKEQYLIPYFIAAHPGTTDEDMMNLALWLKGNGFRADQVQAFYPSPMASATAMYH 611

Query: 379 LEQVD-----------ENVKAERLLCLQKKL 398
             +             E VK+E    L K  
Sbjct: 612 SGKNPLRKVTYKSEGVEIVKSEEQRRLHKAF 642


>gi|148549952|ref|YP_001270054.1| hypothetical protein Pput_4750 [Pseudomonas putida F1]
 gi|148514010|gb|ABQ80870.1| Radical SAM N-terminal domain protein [Pseudomonas putida F1]
          Length = 766

 Score = 71.9 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 54/359 (15%), Positives = 116/359 (32%), Gaps = 52/359 (14%)

Query: 57  NSMDDADLI-VLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGE 115
              ++A ++ +L++  +     EK    L     ++N  +       V+           
Sbjct: 268 EDPNEAKVVQILDSPAVT---REKSVIRLPSFEKVRNDPVLYAHANRVLHLE-TNPGNAR 323

Query: 116 EILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNR--- 172
            ++++   V+V   P       E            + DY     + R+     G  R   
Sbjct: 324 ALVQKHGEVDVWFNPPPIPMSTE------------EMDYVFGMPYARVPHPAYGKERIPA 371

Query: 173 KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDN--GVCEIT--L 227
              +   + I  GC   CTFC +    G  I +RS   ++ E  ++ D   G   +   L
Sbjct: 372 YEMIRFSVNIMRGCFGGCTFCSITEHEGRIIQNRSHESILHEIEEMRDKVPGFTGVVSDL 431

Query: 228 LGQNVNAWR----------------------GKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            G   N +R                       + L+ +  +  +L      + G+ ++  
Sbjct: 432 GGPTANMYRIACKSPEIEKHCRKPSCVFPGICENLNTDHSSLIELYRKARALPGVKKILI 491

Query: 266 TTSHPRDMSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRR--HTAYEYRQIIDR 321
            +    D++    +   +L    +  YL +  +      L  M +    T   ++++ ++
Sbjct: 492 ASGLRYDLAVESPEYVKELVTHHVGGYLKIAPEHTERGPLDKMMKPGIGTYDRFKRMFEK 551

Query: 322 I-RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
             +    +  +   FI   PG TD+D       +   G+       + P      + M 
Sbjct: 552 FSKEAGKEQYLIPYFIAAHPGTTDEDMMNLALWLKGNGFRADQVQAFYPSPMASATAMY 610


>gi|119357691|ref|YP_912335.1| radical SAM domain-containing protein [Chlorobium phaeobacteroides
           DSM 266]
 gi|119355040|gb|ABL65911.1| Radical SAM domain protein [Chlorobium phaeobacteroides DSM 266]
          Length = 476

 Score = 71.9 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 57/309 (18%), Positives = 97/309 (31%), Gaps = 34/309 (11%)

Query: 71  HIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGP 130
            ++  A +  +     +R+     +  G  + +    C          R      V+   
Sbjct: 97  SVQTGAVKPAFELARALRSRGIKVVLGGPYVTIFPDRC----------REHGDALVIGEA 146

Query: 131 QTYYR--LPELLERARFGKRVVDT--DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGC 186
              +R    +LL      +  V T  D S++    + ++  G Y         +    GC
Sbjct: 147 DDIWREVQEDLLGGTLKAEYRVQTFPDLSIDRVVGKSALDIGSYFTTN----VVQTTRGC 202

Query: 187 DKFCTFCVVPYTRG-IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
              C FC V    G     R++  V+ E    +         L   VNA     L  EK 
Sbjct: 203 PYNCDFCNVHVMNGHRLRHRTIPAVLREVENFLKEDKRIFFFLDDTVNA---DELYAEK- 258

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
               L   L    G+  +   T+   +    L+ A          L + ++S +D    +
Sbjct: 259 ----LFRELIPF-GISWVGQATTALGEKPR-LLDAFARSG--CGALLVGIESLADGSNHA 310

Query: 306 MNRRHT-AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
             + H  A      I  IR     I +   FI G   +T D  R   + +++ G      
Sbjct: 311 HQKFHNPAARQAACIKNIRDA--GICVYGSFIYGLDEDTLDMPRMLEEFIEETGVDVPGI 368

Query: 365 FKYSPRLGT 373
               P  GT
Sbjct: 369 NLLRPIPGT 377


>gi|167035917|ref|YP_001671148.1| hypothetical protein PputGB1_4928 [Pseudomonas putida GB-1]
 gi|166862405|gb|ABZ00813.1| Radical SAM domain protein [Pseudomonas putida GB-1]
          Length = 736

 Score = 71.9 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 54/359 (15%), Positives = 117/359 (32%), Gaps = 52/359 (14%)

Query: 57  NSMDDADLI-VLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGE 115
              ++A ++ +L++  +     EK    L     ++N  +       V+           
Sbjct: 238 EDPNEAKVVQILDSPSVT---REKSVIRLPSFEKVRNDPVLYAHANRVLHLE-TNPGNAR 293

Query: 116 EILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNR--- 172
            ++++   V+V   P       E            + DY     + R+     G  R   
Sbjct: 294 ALVQKHGEVDVWFNPPPIPMSTE------------EMDYVFGMPYARVPHPAYGKERIPA 341

Query: 173 KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDN--GVCEIT--L 227
              +   + I  GC   CTFC +    G  I +RS   +++E  ++ D   G   +   L
Sbjct: 342 YEMIRFSVNIMRGCFGGCTFCSITEHEGRIIQNRSHESILNEIEEMRDKVPGFTGVVSDL 401

Query: 228 LGQNVNAWR----------------------GKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            G   N +R                       + L+ +  +  +L      + G+ ++  
Sbjct: 402 GGPTANMYRIACKSHDIEKHCRKPSCVFPGICENLNTDHSSLIELYRKARALPGVKKILI 461

Query: 266 TTSHPRDMSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRR--HTAYEYRQIIDR 321
            +    D++    +   +L    +  YL +  +      L  M +    T   ++++ ++
Sbjct: 462 ASGLRYDLAVESPEYVKELVTHHVGGYLKIAPEHTERGPLDKMMKPGIGTYDRFKRMFEK 521

Query: 322 I-RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
             +    +  +   FI   PG TD+D       +   G+       + P      + M 
Sbjct: 522 FSKEAGKEQYLIPYFIAAHPGTTDEDMMNLALWLKGNGFRADQVQAFYPSPMASATAMY 580


>gi|161378117|ref|NP_746977.2| hypothetical protein PP_4872 [Pseudomonas putida KT2440]
 gi|47606282|sp|Q88DF3|Y4872_PSEPK RecName: Full=UPF0313 protein PP_4872
          Length = 766

 Score = 71.9 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 54/359 (15%), Positives = 116/359 (32%), Gaps = 52/359 (14%)

Query: 57  NSMDDADLI-VLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGE 115
              ++A ++ +L++  +     EK    L     ++N  +       V+           
Sbjct: 268 EDPNEAKVVQILDSPAVT---REKSVIRLPSFEKVRNDPVLYAHANRVLHLE-TNPGNAR 323

Query: 116 EILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNR--- 172
            ++++   V+V   P       E            + DY     + R+     G  R   
Sbjct: 324 ALVQKHGEVDVWFNPPPIPMSTE------------EMDYVFGMPYARVPHPAYGKERIPA 371

Query: 173 KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDN--GVCEIT--L 227
              +   + I  GC   CTFC +    G  I +RS   ++ E  ++ D   G   +   L
Sbjct: 372 YEMIRFSVNIMRGCFGGCTFCSITEHEGRIIQNRSHESILHEIEEMRDKVPGFTGVVSDL 431

Query: 228 LGQNVNAWR----------------------GKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            G   N +R                       + L+ +  +  +L      + G+ ++  
Sbjct: 432 GGPTANMYRIACKSPEIEKYCRKPSCVFPGICENLNTDHSSLIELYRKARALPGVKKILI 491

Query: 266 TTSHPRDMSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRR--HTAYEYRQIIDR 321
            +    D++    +   +L    +  YL +  +      L  M +    T   ++++ ++
Sbjct: 492 ASGLRYDLAVESPEYVKELVTHHVGGYLKIAPEHTERGPLDKMMKPGIGTYDRFKRMFEK 551

Query: 322 I-RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
             +    +  +   FI   PG TD+D       +   G+       + P      + M 
Sbjct: 552 FSKEAGKEQYLIPYFIAAHPGTTDEDMMNLALWLKGNGFRADQVQAFYPSPMASATAMY 610


>gi|313500855|gb|ADR62221.1| Hypothetical protein, conserved [Pseudomonas putida BIRD-1]
          Length = 766

 Score = 71.9 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 54/359 (15%), Positives = 116/359 (32%), Gaps = 52/359 (14%)

Query: 57  NSMDDADLI-VLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGE 115
              ++A ++ +L++  +     EK    L     ++N  +       V+           
Sbjct: 268 EDPNEAKVVQILDSPAVT---REKSVIRLPSFEKVRNDPVLYAHANRVLHLE-TNPGNAR 323

Query: 116 EILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNR--- 172
            ++++   V+V   P       E            + DY     + R+     G  R   
Sbjct: 324 ALVQKHGEVDVWFNPPPIPMSTE------------EMDYVFGMPYARVPHPAYGKERIPA 371

Query: 173 KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDN--GVCEIT--L 227
              +   + I  GC   CTFC +    G  I +RS   ++ E  ++ D   G   +   L
Sbjct: 372 YEMIRFSVNIMRGCFGGCTFCSITEHEGRIIQNRSHESILHEIEEMRDKVPGFTGVVSDL 431

Query: 228 LGQNVNAWR----------------------GKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            G   N +R                       + L+ +  +  +L      + G+ ++  
Sbjct: 432 GGPTANMYRIACKSPEIEKHCRKPSCVFPGICENLNTDHSSLIELYRKARALPGVKKILI 491

Query: 266 TTSHPRDMSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRR--HTAYEYRQIIDR 321
            +    D++    +   +L    +  YL +  +      L  M +    T   ++++ ++
Sbjct: 492 ASGLRYDLAVESPEYVKELVTHHVGGYLKIAPEHTERGPLDKMMKPGIGTYDRFKRMFEK 551

Query: 322 I-RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
             +    +  +   FI   PG TD+D       +   G+       + P      + M 
Sbjct: 552 FSKEAGKEQYLIPYFIAAHPGTTDEDMMNLALWLKGNGFRADQVQAFYPSPMASATAMY 610


>gi|91773564|ref|YP_566256.1| radical SAM family Fe-S protein [Methanococcoides burtonii DSM
           6242]
 gi|91712579|gb|ABE52506.1| Radical SAM protein with Cobalamin (vitamin B12)-binding domain
           [Methanococcoides burtonii DSM 6242]
          Length = 487

 Score = 71.5 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 36/210 (17%), Positives = 70/210 (33%), Gaps = 18/210 (8%)

Query: 168 GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI-EISRSLSQVVDEARKLIDNGVCEIT 226
               R       +    GC   CTFC      G     RS   V++E + + +    E  
Sbjct: 211 SHGKRHSKRFYPIITSRGCPAKCTFCTAYRVWGRKYRHRSPENVIEEMKYVKEKYNIEEL 270

Query: 227 LLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPR---DMSDCLIKAHGD 283
           L+  +                  +   +  I+     ++ T +      +++ LI+   +
Sbjct: 271 LIEDD-------NFTANPKRAEKICDLM--IENKFNFKWDTPNGIAAFALNEKLIRKMKN 321

Query: 284 LDVLMPYLHLPVQSGSDRIL-KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGE 342
                  +++ V+SG+   L   + +     +  +I++  R V  DI      I+G PG+
Sbjct: 322 AG--CYKINIAVESGNQNTLNNIIKKPLKLEKVEEIVNICRKV--DIDFGIFLILGMPGD 377

Query: 343 TDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
             +          KI     F    +P  G
Sbjct: 378 NLEAMWDNYKFARKIKVFDPFISVATPYPG 407


>gi|168180945|ref|ZP_02615609.1| putative B12-binding Fe-S oxidoreductase [Clostridium botulinum
           NCTC 2916]
 gi|226950043|ref|YP_002805134.1| putative B12-binding Fe-S oxidoreductase [Clostridium botulinum A2
           str. Kyoto]
 gi|182668291|gb|EDT80270.1| putative B12-binding Fe-S oxidoreductase [Clostridium botulinum
           NCTC 2916]
 gi|226844016|gb|ACO86682.1| putative B12-binding Fe-S oxidoreductase [Clostridium botulinum A2
           str. Kyoto]
          Length = 561

 Score = 71.5 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 52/309 (16%), Positives = 107/309 (34%), Gaps = 36/309 (11%)

Query: 60  DDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILR 119
           + ADL+   +C+I           L  +  L N          +V  G     + E  LR
Sbjct: 54  EKADLVAF-SCYIWN---------LEYVEELANLIKLVKPSTEIVFGGPEVSYDSESFLR 103

Query: 120 RSPIVNVVVGPQTYYRLPELLERARFGKRV-------VDTDYSVEDKFERLSIVDGGYNR 172
           + P   V+ G +      E ++     K V       + T  S+E   ER +I       
Sbjct: 104 KVPGEYVIEG-EGEETFREFIKCKIENKSVDRVKGLYIKTLNSIEYTGERHNISMDSVVF 162

Query: 173 K-------RGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEI 225
                   +    +     GC   C +C+     G      + +V  E + L+D  V  I
Sbjct: 163 PYKEEEDLKNKIVYYEASRGCPFKCKYCLSSTLHG-VRFHDIERVKKEIKFLVDKNVKLI 221

Query: 226 TLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLD 285
             + +  N      +   +   +    +           +       ++   ++      
Sbjct: 222 KFVDRTFNCNHKFAMGIWEYILNLDTDA---------TFHFEISADLLTKEELEILAKGK 272

Query: 286 VLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDD 345
                  + VQ+ ++ +LK++NR       ++ ++ +++++ +I    D I G PGE  +
Sbjct: 273 EGRIQFEVGVQTTNNEVLKNINRHVNFETIKEKVEELKNLK-NIKQHLDLIAGLPGEDYN 331

Query: 346 DFRATMDLV 354
            F+ + + V
Sbjct: 332 SFKNSFNDV 340


>gi|168986688|gb|ACA35076.1| oxidoreductase [Pseudomonas putida]
          Length = 766

 Score = 71.5 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 62/391 (15%), Positives = 125/391 (31%), Gaps = 65/391 (16%)

Query: 57  NSMDDADLI-VLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGE 115
              ++A ++ +L++  +     EK    L     ++N  +       V+           
Sbjct: 268 EDPNEAKVVQILDSPSVT---REKSVIRLPSFEKVRNDPVLYAHANHVLHLE-TNPGNAR 323

Query: 116 EILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNR--- 172
            ++++   V+V   P       E            + DY     + R+     G  R   
Sbjct: 324 ALVQKHGEVDVWFNPPPIPMSTE------------EMDYVFGMPYARVPHPAYGKERIPA 371

Query: 173 KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDN--GVCEIT--L 227
              +   + I  GC   CTFC +    G  I +RS   ++ E  ++ D   G   +   L
Sbjct: 372 YEMIRFSVNIMRGCFGGCTFCSITEHEGRIIQNRSHESILHEIEEMRDKVPGFTGVVSDL 431

Query: 228 LGQNVNAWR----------------------GKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            G   N +R                       + L+ +  +  +L      + G+ ++  
Sbjct: 432 GGPTANMYRIACKSHDIEKHCRKPSCVFPGICENLNTDHSSLIELYRKARALPGVKKILI 491

Query: 266 TTSHPRDMSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRR--HTAYEYRQIIDR 321
            +    D++    +   +L    +  YL +  +      L  M +    T   ++++ ++
Sbjct: 492 ASGLRYDLAVESPEYVKELVTHHVGGYLKIAPEHTERGPLDKMMKPGIGTYDRFKRMFEK 551

Query: 322 I-RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY--AQAFSFKYSPRLGTPGSNM 378
             +    +  +   FI   PG TD+D       +   G+   Q  +F  SP         
Sbjct: 552 FSKEAGKEQYLIPYFIAAHPGTTDEDMMNLALWLKGNGFRADQVQAFYPSPMASATAMYH 611

Query: 379 LEQVD-----------ENVKAERLLCLQKKL 398
             +             E VK+E    L K  
Sbjct: 612 SGKNPLRKVTYKSEGVEIVKSEEQRRLHKAF 642


>gi|24986637|gb|AAN70441.1|AE016685_6 conserved hypothetical protein [Pseudomonas putida KT2440]
          Length = 784

 Score = 71.5 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 54/359 (15%), Positives = 116/359 (32%), Gaps = 52/359 (14%)

Query: 57  NSMDDADLI-VLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGE 115
              ++A ++ +L++  +     EK    L     ++N  +       V+           
Sbjct: 286 EDPNEAKVVQILDSPAVT---REKSVIRLPSFEKVRNDPVLYAHANRVLHLE-TNPGNAR 341

Query: 116 EILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNR--- 172
            ++++   V+V   P       E            + DY     + R+     G  R   
Sbjct: 342 ALVQKHGEVDVWFNPPPIPMSTE------------EMDYVFGMPYARVPHPAYGKERIPA 389

Query: 173 KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDN--GVCEIT--L 227
              +   + I  GC   CTFC +    G  I +RS   ++ E  ++ D   G   +   L
Sbjct: 390 YEMIRFSVNIMRGCFGGCTFCSITEHEGRIIQNRSHESILHEIEEMRDKVPGFTGVVSDL 449

Query: 228 LGQNVNAWR----------------------GKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            G   N +R                       + L+ +  +  +L      + G+ ++  
Sbjct: 450 GGPTANMYRIACKSPEIEKYCRKPSCVFPGICENLNTDHSSLIELYRKARALPGVKKILI 509

Query: 266 TTSHPRDMSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRR--HTAYEYRQIIDR 321
            +    D++    +   +L    +  YL +  +      L  M +    T   ++++ ++
Sbjct: 510 ASGLRYDLAVESPEYVKELVTHHVGGYLKIAPEHTERGPLDKMMKPGIGTYDRFKRMFEK 569

Query: 322 I-RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
             +    +  +   FI   PG TD+D       +   G+       + P      + M 
Sbjct: 570 FSKEAGKEQYLIPYFIAAHPGTTDEDMMNLALWLKGNGFRADQVQAFYPSPMASATAMY 628


>gi|307109146|gb|EFN57384.1| hypothetical protein CHLNCDRAFT_142788 [Chlorella variabilis]
          Length = 959

 Score = 71.5 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 37/246 (15%), Positives = 73/246 (29%), Gaps = 35/246 (14%)

Query: 164 SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR--SLSQVVDEARKLIDNG 221
           S+    + R       +     C+  C +C +   +           +VV+ A     + 
Sbjct: 84  SVTGRFFGRDVYYRGIVEFSNVCENDCGYCGIRKHQRRARRYTMPRDEVVEVADWAFRHR 143

Query: 222 VCEITLLGQNVNAWRGKGLDG-------EKCTFSDLLYSLSE------------------ 256
           +  + L    +N  +             E+    D    L +                  
Sbjct: 144 LGTLMLQSGELNTPQRMKYLTDVVAAVKERTRALDAEQRLVDPEALPKDAAGVGLCVALS 203

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           +  L R +Y           L++       L   +H P Q+         +     +++ 
Sbjct: 204 VGELPREQYQQLKDAGADRYLLRIESSNPQLYASIHPPAQA-------RASGPARFHKWE 256

Query: 317 QIIDRIRSVRP-DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
                +R ++     I +  +VG PG+T  D    +     +G        Y    GTP 
Sbjct: 257 NRTRCLRDLKDIGFMIGTGVMVGLPGQTLRDLAGDIMFFRDLGADMIGMGPYITEAGTPV 316

Query: 376 SNMLEQ 381
           ++M EQ
Sbjct: 317 ADMWEQ 322


>gi|317129680|ref|YP_004095962.1| radical SAM protein [Bacillus cellulosilyticus DSM 2522]
 gi|315474628|gb|ADU31231.1| Radical SAM domain protein [Bacillus cellulosilyticus DSM 2522]
          Length = 573

 Score = 71.5 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 63/356 (17%), Positives = 114/356 (32%), Gaps = 41/356 (11%)

Query: 95  IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDT-- 152
            K   D  +V+ G     + E  L+R   V+ +V  +      +LL + + G+ V     
Sbjct: 78  KKVLPDTKIVLGGPEVSYDTEYWLKRVEEVDYIVRGEGEETFKQLLHQLKSGESVETIGS 137

Query: 153 -------------DYSVEDKFERLSIVDGGYNRK--RGVTAFLTIQEGCDKFCTFCVVPY 197
                             D  +  S     ++R        +     GC   C FC+   
Sbjct: 138 LGYRRDGKVTSTPSRPNLDISKIPSPYRFDFDRHELSKRIVYFETSRGCPFQCQFCLSSI 197

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257
             G      +  V  +   LI+NG   I  + +  N  R            ++   L E 
Sbjct: 198 EVG-VRYYDIENVKSDILYLIENGAKMIKFIDRTFNIKRDYA--------MEMFQFLIEN 248

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
            G    ++  +      + L   +      +    + VQS +D     + RR    +  +
Sbjct: 249 HGGCEFQFEITADIMRPEVLQYLNEHAPPGVFRFEIGVQSTNDLTNDLVKRRQNFKKLAR 308

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
            +  ++     I    D I G P E  D F+ T + V  +   +          GT    
Sbjct: 309 TVTLVKEG-GKIDQHLDLIAGLPEENYDSFKKTFNDVFALRPEELQLGFLKMLRGTGMRA 367

Query: 378 MLEQ--------VDENVKAERLLCLQKKLREQQVS------FNDACVGQIIEVLIE 419
           M +Q            + +  +L  Q+  R ++        +ND  +   +E LIE
Sbjct: 368 MADQYKYKYMDYAPYEILSNNVLSFQELTRIKRAEDILEKFWNDHRLDNTVEYLIE 423


>gi|289811075|ref|ZP_06541704.1| hypothetical protein Salmonellaentericaenterica_44692 [Salmonella
           enterica subsp. enterica serovar Typhi str. AG3]
          Length = 78

 Score = 71.5 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 38/78 (48%), Gaps = 4/78 (5%)

Query: 395 QKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPWLQS-VVLNSK-NHNIGDI 450
            +  ++         VG+ I V++++  +E   G+ +  +P +   V LN + N   GDI
Sbjct: 1   MQLQQQISAERLQEKVGREILVIVDEVDEEGAIGRSMADAPEIDGAVYLNGETNVKPGDI 60

Query: 451 IKVRITDVKISTLYGELV 468
           ++V++ +     L+G  V
Sbjct: 61  VRVKVENADEYDLWGSRV 78


>gi|302037649|ref|YP_003797971.1| hypothetical protein NIDE2333 [Candidatus Nitrospira defluvii]
 gi|300605713|emb|CBK42046.1| conserved protein of unknown function, Fe-S oxidoreductase
           [Candidatus Nitrospira defluvii]
          Length = 541

 Score = 71.5 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 55/319 (17%), Positives = 105/319 (32%), Gaps = 43/319 (13%)

Query: 88  RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147
           + +     +   D+ + V G       E+ L         +G +     P+ L     GK
Sbjct: 86  KTVAEGIKRLAPDIPIAVGGPHITIMKEQALLSC-FDYAFIG-EAEESWPQFLNACEQGK 143

Query: 148 R-----------------------VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQ- 183
                                   + + D        RL +        RG   F +IQ 
Sbjct: 144 DLSSVAGIIYRRDAEVVSTGQPEDITNLDALPIPARHRLPMSRYKLGTLRGRLPFTSIQT 203

Query: 184 -EGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGL 240
             GC   C FC     +  E   RS   VV+E +++++  G     ++   +  W+   L
Sbjct: 204 MRGCPWKCIFCASEALKTTEMRVRSPRSVVNEMKQVVETFGTRHFYIVDDVMTLWKDHIL 263

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300
           +       DL+      +GL      ++    + + +I       ++   L   +++   
Sbjct: 264 E-----ICDLIDR----EGLQITFEGSTRANLVEEDVIARLVKSGLIR--LSFGLETVDP 312

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG-Y 359
            I K+M ++     Y +           +   +  ++G PGET +  RAT+  + +    
Sbjct: 313 EIRKTMKKQVPLEHYVKANGICNKY--GVEALNSVMIGLPGETRETVRATLKFLRQAREV 370

Query: 360 AQAFSFKYSPRLGTPGSNM 378
            QA      P  GT    +
Sbjct: 371 KQANFAIAVPYPGTEFHKL 389


>gi|164687636|ref|ZP_02211664.1| hypothetical protein CLOBAR_01278 [Clostridium bartlettii DSM
           16795]
 gi|164603410|gb|EDQ96875.1| hypothetical protein CLOBAR_01278 [Clostridium bartlettii DSM
           16795]
          Length = 595

 Score = 71.5 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 48/285 (16%), Positives = 102/285 (35%), Gaps = 27/285 (9%)

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           I  +  +  K   +L++ + G     + EE + +   V+ ++  +    + +L++  R  
Sbjct: 73  IVKICENLKKVKPNLIIGLGGPEVSYDSEESMEKYQFVDYILRDEGEMVMRDLVKHFRGE 132

Query: 147 KRVVDTD------------YSVEDKFERLSIVDGGY-----NRKRGVTAFLTIQEGCDKF 189
             + D D                +  + L ++   Y             +     GC   
Sbjct: 133 MSIEDVDGITYRQDGKIIRNKTRELLKDLDLIPSPYENLDVKEYENRIVYYETSRGCPFN 192

Query: 190 CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSD 249
           C +C+    +G     S+ +V  + + LID  V +I  + +  NA         K    +
Sbjct: 193 CQYCLSSAIKG-LRYFSIDRVKRDLKNLIDARVSQIKFIDRTFNA--------NKKFAKE 243

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
           ++  L E        +       + D +++   D    +    + VQ+ +   L ++ RR
Sbjct: 244 IMEFLMENDNGYTTYHFEVTAHLLDDDMLEFLKDCKEGLFQFEIGVQTTNQEALDAVGRR 303

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
               +   ++  I S + +I    D I G P E  D F  + + V
Sbjct: 304 DDFEKLSYVVKTIESYQ-NIHQHLDLIAGLPYEGYDSFEKSFNDV 347


>gi|39995693|ref|NP_951644.1| radical SAM family protein [Geobacter sulfurreducens PCA]
 gi|39982457|gb|AAR33917.1| radical SAM protein, TIGR01212 family [Geobacter sulfurreducens
           PCA]
 gi|298504704|gb|ADI83427.1| radical SAM domain iron-sulfur cluster-binding oxidoreductase,
           TIGR01212 family [Geobacter sulfurreducens KN400]
          Length = 319

 Score = 71.5 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 31/108 (28%), Positives = 48/108 (44%), Gaps = 4/108 (3%)

Query: 272 DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAI 331
           D +  L+        +   + L +QS  D IL+ +NR HT  EY + +DRI      IA+
Sbjct: 133 DEALELLADLAQEHYVC--IELGLQSMDDAILERINRGHTLDEYLRTVDRIAGR--GIAL 188

Query: 332 SSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            +  I GFPGET + F  T  L+  +        +     GT  + + 
Sbjct: 189 CTHLIYGFPGETREGFLKTAHLLAGLPVDSVKLHQLHAVKGTRLAELY 236


>gi|118581682|ref|YP_902932.1| radical SAM domain-containing protein [Pelobacter propionicus DSM
           2379]
 gi|118504392|gb|ABL00875.1| Radical SAM domain protein [Pelobacter propionicus DSM 2379]
          Length = 563

 Score = 71.5 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 40/201 (19%), Positives = 72/201 (35%), Gaps = 15/201 (7%)

Query: 158 DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKL 217
           ++      V    N + G    + +  GC   C FC   +  G    +    +VD   + 
Sbjct: 229 ERHPPAQTVILTENTEFGDMFLVEVSRGCPHGCRFCGAGFIYGRFRQQPYQALVDAIERG 288

Query: 218 IDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCL 277
           +++    I L+G  V+ +R  G          L   + E    V +        D    +
Sbjct: 289 LEHRGK-IGLVGAAVSDYRDIG---------RLCRHVVERGAKVSVSSLRIDRTD--PDM 336

Query: 278 IKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIV 337
           + A          + L  + GS R+   + +  T  +     +RI + R  + +   FI+
Sbjct: 337 LDALVASGH--KTISLAPEGGSQRLRDLIRKNLTEEQILDACERIIA-RDILNLRLYFII 393

Query: 338 GFPGETDDDFRATMDLVDKIG 358
           G P ET+ D    + LV  I 
Sbjct: 394 GLPTETESDLEELVRLVTTIR 414


>gi|325916072|ref|ZP_08178362.1| Fe-S oxidoreductase [Xanthomonas vesicatoria ATCC 35937]
 gi|325537748|gb|EGD09454.1| Fe-S oxidoreductase [Xanthomonas vesicatoria ATCC 35937]
          Length = 570

 Score = 71.5 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 48/252 (19%), Positives = 77/252 (30%), Gaps = 22/252 (8%)

Query: 141 ERARFGKRVVDTDYS---VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197
            RA  G +  D   S     D  +          R    +  +    GC   C +C  P 
Sbjct: 244 ARAHPGAQPPDARLSGLPAWDLVDMPRYRQFWQQRHGYFSLNMAASRGCPFRCNWCAKPI 303

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257
                  R    V  E   L      +   +  ++  +  + ++            LSE 
Sbjct: 304 WGNHYKRRGAEDVAAEMIHLKRQFQPDHLWMADDIFGFHIEWVET-------FAQRLSEA 356

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
            G+  + +T     D++     A            +  +SGS RIL  M +     E   
Sbjct: 357 DGV--IPFTIQTRADLASD-RMAAALSRAGCAEAWIGAESGSQRILDKMTKGTQVAEVIA 413

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
             +R+ +    I +     +G+ GE  DD  AT  LV +            P  GT    
Sbjct: 414 ARERLGA--HGIRVGFFIQLGYLGEELDDILATRALVTQANPDIIGVSVSYPLPGTKFY- 470

Query: 378 MLEQVDENVKAE 389
                 E VK +
Sbjct: 471 ------EEVKNQ 476


>gi|34540292|ref|NP_904771.1| oxygen-independent coproporphyrinogen III oxidase [Porphyromonas
           gingivalis W83]
 gi|34396604|gb|AAQ65670.1| oxygen-independent coproporphyrinogen III oxidase, putative
           [Porphyromonas gingivalis W83]
          Length = 376

 Score = 71.5 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 41/234 (17%), Positives = 84/234 (35%), Gaps = 23/234 (9%)

Query: 186 CDKFCTFCVV-PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK 244
           C   C++C     T     S  +  ++ E              +   +      G     
Sbjct: 11  CATRCSYCDFYSQTNSALRSEYIQALIAEMSIRRAE-------VTDTIGTLYFGGGTPSL 63

Query: 245 CTFSDLLYSLSEIKGLVRL-----RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
            +  ++   + ++  L            ++P D++   ++    L +    + +  QS  
Sbjct: 64  LSPQEIGRIIEQVYRLFSFSSDAEITLEANPDDLNTSYVQELRTLPI--NRISMGAQSFH 121

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIA-ISSDFIVGFPGETDDDFRATMDLVDKIG 358
           D  L  +NRRH A +  + +D  R+    +  +S D I G PG+T   ++  +  V  + 
Sbjct: 122 DEDLHFLNRRHNARQVLEAVDTCRNA--GLTNLSIDLIYGLPGQTPARWQENISAVLALS 179

Query: 359 YAQAFSFKYSPRLGTPGSNML-----EQVDENVKAERLLCLQKKLREQQVSFND 407
                ++      GTP + +L      +VDE V  E    L+++L        +
Sbjct: 180 PPHLSAYHLIYEEGTPLTRLLHAGKVREVDEEVSLELFRMLREQLTGAGYEHYE 233


>gi|163797711|ref|ZP_02191659.1| Radical SAM domain protein [alpha proteobacterium BAL199]
 gi|159177059|gb|EDP61622.1| Radical SAM domain protein [alpha proteobacterium BAL199]
          Length = 577

 Score = 71.5 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 31/194 (15%), Positives = 66/194 (34%), Gaps = 16/194 (8%)

Query: 184 EGCDKFCTFCVVPYTRGI-EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG 242
            GC   C+FC +    G     R  S +    R+   NG   I +   N           
Sbjct: 218 RGCPFICSFCTIINFHGRAMRHREPSTIETYLRECYANGGRHILVTDDNF---------A 268

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIK--AHGDLDVLMPYLHLPVQSGSD 300
               + ++   +  ++  + +++  S   D     I        +  +  + + ++S   
Sbjct: 269 RSPIWREVTEIMGRLQRELGVKWDISIQVDTLAYRIDGFVEACREAGISRVFIGIESVRP 328

Query: 301 RILKSMNRRHTAYE-YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV-DKIG 358
             LK+  +        R ++   R     + I    IVG P +T +     + ++ ++I 
Sbjct: 329 DNLKAATKGQNKLHLMRDMVMAWRRA--GMLIYGAMIVGLPNDTPERVAEDVRIIQEEIP 386

Query: 359 YAQAFSFKYSPRLG 372
                +F  +P  G
Sbjct: 387 VDILSAFLLTPHPG 400


>gi|156741566|ref|YP_001431695.1| magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative
           cyclase [Roseiflexus castenholzii DSM 13941]
 gi|156232894|gb|ABU57677.1| magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative
           cyclase [Roseiflexus castenholzii DSM 13941]
          Length = 527

 Score = 71.5 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 50/333 (15%), Positives = 90/333 (27%), Gaps = 40/333 (12%)

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVV-------------- 128
            + + +       +       ++ G        ++L  +P ++ +V              
Sbjct: 76  MIYKAQETLRLAREANPGCKTILGGVHPTFMYAQVLTEAPWIDYIVRGEGEEIIVNLMRA 135

Query: 129 ---GPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT-------- 177
              G     R          G RVV T              D                  
Sbjct: 136 IENGSDERDRYQIQGIAFLDGDRVVATPAHPPIADLSTLTPDWSLLEWEKYIYIPLNVRV 195

Query: 178 AFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWR 236
           A      GC   C FC           R     VDE   L+    V    L  +     R
Sbjct: 196 AVPNFARGCPFTCRFCSQWKFWRKYRVRDPIAFVDEIELLVREYKVGFFILADEEPTIHR 255

Query: 237 GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQ 296
            K +        +L      I   +  R T     +    L +  G     + ++ L  +
Sbjct: 256 KKFV----AMCEELERRKLGIHWGINTRVTDILRDEQYLPLYRRAG-----LVHVSLGTE 306

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
           + +   L    +  T  + ++ I  +      I   + FI+G   ET +    T      
Sbjct: 307 AAAQMNLDRFRKETTIEQNKRAIKLLHDQ--GIVAEAQFIMGLENETPETIEETYRYALD 364

Query: 357 IGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAE 389
                A    Y+P    P + + E++ + V+  
Sbjct: 365 WKADMANWNMYTPW---PFAELFEELGDRVEVR 394


>gi|255099828|ref|ZP_05328805.1| putative adenosylcobamide-dependent radical SAM superfamily protein
           [Clostridium difficile QCD-63q42]
          Length = 584

 Score = 71.5 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 51/331 (15%), Positives = 111/331 (33%), Gaps = 37/331 (11%)

Query: 60  DDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILR 119
           ++ D+I+ +T              +G I  L ++  K   +  + + G     +  E ++
Sbjct: 53  NEYDIILFST----------YIWNVGDIVKLCDNLKKIRPNTKIALGGPEVSYDSYEAMK 102

Query: 120 RSPIVNVVVGPQTYYRLPELLERARFGKRVVD------------TDYSVEDKFERLSIVD 167
           +   V+ ++  +      +L+   +    + D                  +  + L  + 
Sbjct: 103 KYDFVDYILYGEGELIFRDLVLHLQGKMEINDVNGLVYRQGNEIIVNKPMELLQDLDEIP 162

Query: 168 GGYNRKRGVTAFLTI-----QEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGV 222
             Y           I       GC   C +C+     G     SL ++  + + LID  V
Sbjct: 163 SPYENLNPKEYENRIVYYESSRGCPFNCQYCLSSTIPG-LRYFSLDRIKSDLKALIDARV 221

Query: 223 CEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHG 282
            +I  + +  NA         +    +++  L +        +       + D +++   
Sbjct: 222 SQIKFIDRTFNA--------NRKVAMEIMDFLMKNDNGYTTYHFEVTAYLIDDKMLEFLA 273

Query: 283 DLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGE 342
           D    +    + VQS +++ L ++ RR    +   ++  + S R +I    D I G P E
Sbjct: 274 DCKEGLFQFEIGVQSTNEKTLDAVGRRDDFKKLSHVVQTVASYR-NIHQHLDLIAGLPYE 332

Query: 343 TDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
               F  + + V  +G             GT
Sbjct: 333 DYKSFENSFNDVFNLGIEHLQLGFLKMIKGT 363


>gi|126698292|ref|YP_001087189.1| putative adenosylcobamide-dependent radical SAM superfamily protein
           [Clostridium difficile 630]
 gi|115249729|emb|CAJ67546.1| putative radical SAM domain-containing protein [Clostridium
           difficile]
          Length = 584

 Score = 71.5 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 51/331 (15%), Positives = 111/331 (33%), Gaps = 37/331 (11%)

Query: 60  DDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILR 119
           ++ D+I+ +T              +G I  L ++  K   +  + + G     +  E ++
Sbjct: 53  NEYDIILFST----------YIWNVGDIVKLCDNLKKIRPNTKIALGGPEVSYDSYEAMK 102

Query: 120 RSPIVNVVVGPQTYYRLPELLERARFGKRVVD------------TDYSVEDKFERLSIVD 167
           +   V+ ++  +      +L+   +    + D                  +  + L  + 
Sbjct: 103 KYDFVDYILYGEGELIFRDLVLHLQGKMEINDVNGLVYRQGNEIIVNKPMELLQDLDEIP 162

Query: 168 GGYNRKRGVTAFLTI-----QEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGV 222
             Y           I       GC   C +C+     G     SL ++  + + LID  V
Sbjct: 163 SPYENLNPKEYENRIVYYESSRGCPFNCQYCLSSTIPG-LRYFSLDRIKSDLKALIDARV 221

Query: 223 CEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHG 282
            +I  + +  NA         +    +++  L +        +       + D +++   
Sbjct: 222 SQIKFIDRTFNA--------NRKVAMEIMDFLMKNDNGYTTYHFEVTAYLIDDKMLEFLA 273

Query: 283 DLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGE 342
           D    +    + VQS +++ L ++ RR    +   ++  + S R +I    D I G P E
Sbjct: 274 DCKEGLFQFEIGVQSTNEKTLDAVGRRDDFKKLSHVVQTVASYR-NIHQHLDLIAGLPYE 332

Query: 343 TDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
               F  + + V  +G             GT
Sbjct: 333 DYKSFENSFNDVFNLGIEHLQLGFLKMIKGT 363


>gi|283131230|dbj|BAI63281.1| putative Mg-protoporphyrin IX monooxidative cyclase [Streptomyces
           sp. SNA15896]
          Length = 679

 Score = 71.5 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 59/321 (18%), Positives = 99/321 (30%), Gaps = 41/321 (12%)

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +     L  +  +     LVV  G     + E   R    V+V+V  +    LP++L+  
Sbjct: 83  IREFGALAETFKQLNPRGLVVFGGTHVANQAERTFRMFDDVDVIVNGEGDLVLPDVLDAY 142

Query: 144 RFG---------------------------KRVVDTDYSVEDKFERLSIVDGGYNRKRGV 176
             G                            R+ D D            +    +R R  
Sbjct: 143 LRGVERTALGDIAGITYRDAGGTVVTTPPRPRIQDLDVIPSPFLTGAIPLLDDNDRFRYD 202

Query: 177 TAFLTIQEGCDKFCTFCVVPYTRG-IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW 235
            A +    GC   C+FC      G    S S +++  E        V  I L   N    
Sbjct: 203 VALMETNRGCPYKCSFCYWGGAVGQRVQSFSRARLRAELELFARLKVHTIVLCDANFGML 262

Query: 236 RGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV--LMPYLHL 293
           R          F D +  L E  G  R     S  ++ S         +    +     L
Sbjct: 263 RADEE------FVDDVIDLRERYGYPRA-VEASWAKNKSKVFFNIVRKMKKHGMRSSFTL 315

Query: 294 PVQSGSDRILKSMNRRH-TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352
            +Q+  D  L  MNR++    ++  +   +   R  +   ++ I G PGET + F    D
Sbjct: 316 ALQTLDDTALHLMNRKNMKVNDWEDLAAWL--NREGLDAYAELIWGAPGETVESFLEGYD 373

Query: 353 LVDKIGYAQAFSFKYSPRLGT 373
            + +   ++   +       T
Sbjct: 374 RLSRH-VSRIAVYPLHLLPNT 393


>gi|255305713|ref|ZP_05349885.1| putative adenosylcobamide-dependent radical SAM superfamily protein
           [Clostridium difficile ATCC 43255]
          Length = 584

 Score = 71.5 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 51/331 (15%), Positives = 111/331 (33%), Gaps = 37/331 (11%)

Query: 60  DDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILR 119
           ++ D+I+ +T              +G I  L ++  K   +  + + G     +  E ++
Sbjct: 53  NEYDIILFST----------YIWNVGDIVKLCDNLKKIRPNTKIALGGPEVSYDSYEAMK 102

Query: 120 RSPIVNVVVGPQTYYRLPELLERARFGKRVVD------------TDYSVEDKFERLSIVD 167
           +   V+ ++  +      +L+   +    + D                  +  + L  + 
Sbjct: 103 KYDFVDYILYGEGELIFRDLVLHLQGKMEINDVNGLVYRQGNEIIVNKPMELLQDLDEIP 162

Query: 168 GGYNRKRGVTAFLTI-----QEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGV 222
             Y           I       GC   C +C+     G     SL ++  + + LID  V
Sbjct: 163 SPYENLNPKEYENRIVYYESSRGCPFNCQYCLSSTIPG-LRYFSLDRIKSDLKALIDARV 221

Query: 223 CEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHG 282
            +I  + +  NA         +    +++  L +        +       + D +++   
Sbjct: 222 SQIKFIDRTFNA--------NRKVAMEIMDFLMKNDNGYTTYHFEVTAYLIDDKMLEFLA 273

Query: 283 DLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGE 342
           D    +    + VQS +++ L ++ RR    +   ++  + S R +I    D I G P E
Sbjct: 274 DCKEGLFQFEIGVQSTNEKTLDAVGRRDDFKKLSHVVQTVASYR-NIHQHLDLIAGLPYE 332

Query: 343 TDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
               F  + + V  +G             GT
Sbjct: 333 DYKSFENSFNDVFNLGIEHLQLGFLKMIKGT 363


>gi|83312887|ref|YP_423151.1| Fe-S oxidoreductase [Magnetospirillum magneticum AMB-1]
 gi|82947728|dbj|BAE52592.1| Fe-S oxidoreductase [Magnetospirillum magneticum AMB-1]
          Length = 448

 Score = 71.5 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 37/231 (16%), Positives = 70/231 (30%), Gaps = 11/231 (4%)

Query: 152 TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVV 211
             +   D        D     ++   A +    GC   C FCV P T     S       
Sbjct: 189 APFPYFDNVIAHRYCDTNPRGQQFPHAQVLSSRGCPYKCIFCVWPATMT---SNDPDGSG 245

Query: 212 DEARKLIDNGVCEITLLG--QNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSH 269
               +       E  L    Q          D         +  +  +   + + ++   
Sbjct: 246 KRIVRQYSADYMEAFLTELVQKYGFRSIYFDDDTFNLGDRHVEKMCAVMRKIGVPWSAMC 305

Query: 270 PRDMS-DCLIKAHGDLDVLMPYLHLPVQSGSDRILK-SMNRRHTAYEYRQIIDRIRSVRP 327
             D S   L +   D       + +  +SG+  ++   +N+R    E R++   I+ V  
Sbjct: 306 RADTSSFHLWQEMKDSG--CFGVKIGFESGNQEVVDNIVNKRLDLEEARKVAFEIKRV-- 361

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
            + +   F  G PGET +  + T + +  +          +   G P   +
Sbjct: 362 GMTLHGTFTFGLPGETPEQMQDTENYMTTLPLDSCQKSGCAEIEGAPLHTL 412


>gi|222056424|ref|YP_002538786.1| radical SAM protein [Geobacter sp. FRC-32]
 gi|221565713|gb|ACM21685.1| Radical SAM domain protein [Geobacter sp. FRC-32]
          Length = 445

 Score = 71.5 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 49/278 (17%), Positives = 93/278 (33%), Gaps = 19/278 (6%)

Query: 99  GDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVED 158
             + VV  G  A +  EE        + VV  +     P++L   + G R+       + 
Sbjct: 80  KGIKVVFGGIHASSMPEEAKSHG---DAVVIGEAESTWPQVLRDFKAG-RLQPFYRGEQL 135

Query: 159 KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKL 217
               L     G          +    GC   CTFC V    G     R +  VV +   +
Sbjct: 136 PLNDLPTPFFGKLSGGHQFRVINTSRGCPYNCTFCSVKPFYGASIRFRPIEDVVRDVCAV 195

Query: 218 IDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCL 277
            +            +N       +G +    D+  +L    G   + + +  P       
Sbjct: 196 PEKMY---------INGDENIWWEGFEQRAIDMFTALRG-SGKKWMGFGSLRPVLTPSGS 245

Query: 278 IKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI-IDRIRSVRPDIAISSDFI 336
              +   +  M  + +   + SD  L +          R+  +  +R     I +S  ++
Sbjct: 246 RMLNAARESGMLTVWVGWDAISDDSLTAYKANGKIGVDRERAVRTLRD--HGIDVSLFYM 303

Query: 337 VGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
           +G   ++ DDF+ +++L D++G +        P  GT 
Sbjct: 304 LGGRNDSLDDFKRSVELADRLGVS-MHPSLLVPYPGTE 340


>gi|86356079|ref|YP_467971.1| Mg-protoporphyrin IX monomethyl ester oxidative cyclase subunit
           protein [Rhizobium etli CFN 42]
 gi|86280181|gb|ABC89244.1| Mg-protoporphyrin IX monomethyl ester oxidative cyclase subunit
           protein [Rhizobium etli CFN 42]
          Length = 509

 Score = 71.5 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 51/328 (15%), Positives = 103/328 (31%), Gaps = 37/328 (11%)

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVV---GPQTYYRLPELLERA 143
            R +  +  +    + +V  G        E+L  +   +++V   G +T  RL E L   
Sbjct: 82  ARAIAEAVKRSDPAIRIVYGGVFPTYHWREVLAETEAFDILVRGEGEETMRRLAEALAAH 141

Query: 144 RFGKRVVDTDY-----------------SVEDKFERLSIVDGGYNRKRGVT--AFLTIQE 184
           R    V    Y                  ++       ++D       G      +    
Sbjct: 142 RPLDAVAGIAYRDGHGEIQATRPAQAIADLDGYRIGWELIDHARYSYWGGKRAVVMQFSR 201

Query: 185 GCDKFCTFCVVPYTRGIEISRSLSQV-VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
           GC   C +C           RS      + AR   + GV  I L  +N  + R       
Sbjct: 202 GCPHLCNYCGQRGFWTRWRHRSPEGFAKEIARLYREQGVELINLADENPTSSR------- 254

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
           +   + L   ++E   +  +  T +        ++  +    V+     L +++  +  L
Sbjct: 255 RAWLAFLEAMIAENVPVQIVGSTRTDDIVRDADILHLYRKAGVVR--WLLGMENTDEATL 312

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
             + +       R+ I  +R    DI   + ++VGF  E   D       +      Q  
Sbjct: 313 ALIKKGGAKTTDREAIRLLRQ--HDILSMATWVVGFEEEKLSDLWRGFRQLLSYDPDQIQ 370

Query: 364 SFKYSPRLGTPGSNMLEQ---VDENVKA 388
           +   +P   TP   +      ++ +++ 
Sbjct: 371 ALYVTPHRWTPFFRIARDRQVIETDIRK 398


>gi|116625675|ref|YP_827831.1| radical SAM domain-containing protein [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116228837|gb|ABJ87546.1| Radical SAM domain protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 467

 Score = 71.5 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 36/226 (15%), Positives = 67/226 (29%), Gaps = 12/226 (5%)

Query: 153 DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVD 212
                D  +               +  +    GC   C +C  P        RS   V +
Sbjct: 182 PMPAWDLIDAEPYRRAWTEAHGYFSMNMVSSRGCPYRCNWCAKPIWGDSYHCRSAHLVAE 241

Query: 213 EARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
           E   +      +      ++ A   +        F+D + +L                R 
Sbjct: 242 EMLAIKSQFRPDHLWFADDIFALSQQWT----LEFADAVEALGAQIPFKMQSRCDLMTRP 297

Query: 273 MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAIS 332
               L +A          + + V+SG+  +L +M++    ++  +  + +   R  I   
Sbjct: 298 TVGALARA------GCTEVWMGVESGAQDVLDAMDKGTRLWQVYEARESL--CRHGIRAC 349

Query: 333 SDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
                G+PGET  +   T+ LV +            P  GT    M
Sbjct: 350 YFLQFGYPGETWTEIEKTLALVRETRPDDIGVSVSYPLPGTAFHKM 395


>gi|260886817|ref|ZP_05898080.1| putative radical SAM domain protein [Selenomonas sputigena ATCC
           35185]
 gi|330839376|ref|YP_004413956.1| Radical SAM domain protein [Selenomonas sputigena ATCC 35185]
 gi|260863416|gb|EEX77916.1| putative radical SAM domain protein [Selenomonas sputigena ATCC
           35185]
 gi|329747140|gb|AEC00497.1| Radical SAM domain protein [Selenomonas sputigena ATCC 35185]
          Length = 590

 Score = 71.5 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 47/287 (16%), Positives = 93/287 (32%), Gaps = 22/287 (7%)

Query: 108 CVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVD 167
           C A    E  L    +++ ++         + +   +  +    T   V +  + L  VD
Sbjct: 115 CDAVVYHEGELTVLELMDFLLDGTGRLADIKGIAYWQNDEVKTTTPRPVIENLDALPFVD 174

Query: 168 GGY---NRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN---G 221
                  +K      +    GC   C FC    + G    RS+  V++E  + ++    G
Sbjct: 175 EDCYLLPQKNRRDLCIMTGRGCPFRCAFCYEGRSSGKVRFRSVENVLEEIDRFLEEVPRG 234

Query: 222 VCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAH 281
           V    L   +      K +        + L    E +          H   +   +IK  
Sbjct: 235 VEPYILFTDDTFTLDEKRV----HRLCEGLKERQEKRHFHWFCEGHVHTLKLHPDMIKDI 290

Query: 282 GDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA-ISSDFIVGFP 340
                L   + L ++SG  R+L++  +  T  E +++I   R     I  I  + I+G  
Sbjct: 291 AAAGALR--IQLGIESGVPRVLEAYRKHTTPEEIKEVIAACREA--GIKQIYGNIILGSA 346

Query: 341 GETDDDFRATMDLVDKIGYAQ------AFSFKYSPRLGTPGSNMLEQ 381
             + + +   +    ++               Y P   T  +   E+
Sbjct: 347 FFSRETYEQDLAFGKEL-LDWGQGTLELGVVCYWPLPETSITKEPEK 392


>gi|90426281|ref|YP_534651.1| radical SAM family protein [Rhodopseudomonas palustris BisB18]
 gi|90108295|gb|ABD90332.1| Radical SAM [Rhodopseudomonas palustris BisB18]
          Length = 607

 Score = 71.5 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 49/278 (17%), Positives = 92/278 (33%), Gaps = 16/278 (5%)

Query: 105 VAGCVAQAEGEEILRRSP---IVNVVVGPQTYYRLPELLERARFGKRVV---DTDYSVED 158
           V+GC+A   G +   +      + +  G         LL+ AR   + +     D     
Sbjct: 137 VSGCLAMLPGIQPDLQHALDLGITLYAGELEGRCDALLLDAARGALQPLYNTLNDLPSLQ 196

Query: 159 KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI-EISRSLSQVVDEARKL 217
                 +      R            GC   C+FC +   +G     RS   +    R+ 
Sbjct: 197 GAPSPILPKQFLARTYNTQTSFDAGRGCPYQCSFCTIINVQGRKSRGRSTDDIARLVREN 256

Query: 218 IDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG-LVRLRYTTSHPRDMSDC 276
           +  GV    +   N    R K  +       +L    +   G  ++L             
Sbjct: 257 LAQGVNWFFMTDDNFA--RNKDWESILDQLIELRAESAAAGGRDIKLVIQVDTLCHKIPG 314

Query: 277 LIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA-YEYRQIIDRIRSVRPDIAISSDF 335
            I       V+   + L ++S + + L S N+R     EYR ++   +S    +   + +
Sbjct: 315 FIDKAKAAGVVR--VFLGLESINPQNLASANKRQNKITEYRAMLLAWKSA--GVLTYAGY 370

Query: 336 IVGFPGETDDDFRATMDLVD-KIGYAQAFSFKYSPRLG 372
           I+GFP +T       + ++  ++       F  +P  G
Sbjct: 371 ILGFPHDTPASIAEDIAIIQNELPLDILEFFCLTPLPG 408


>gi|312135507|ref|YP_004002845.1| Radical SAM domain-containing protein [Caldicellulosiruptor
           owensensis OL]
 gi|311775558|gb|ADQ05045.1| Radical SAM domain protein [Caldicellulosiruptor owensensis OL]
          Length = 536

 Score = 71.5 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 45/289 (15%), Positives = 99/289 (34%), Gaps = 20/289 (6%)

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135
           A          +  L     K    + +++ G        + L     V+ ++  +  Y 
Sbjct: 58  AISTYIWNRNYVEKLVEGLKKAQKSIKIILGGP---EVYFDSLEEWKFVDFIIRGEGEYP 114

Query: 136 LPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
             +L E    G++    +Y   D   +L       N  +    +     GC   C++C+ 
Sbjct: 115 FLDLCEHIATGRQYTQKEYPPFD-LSKLPFAYKNENLDQSRIYYYESSRGCPFRCSYCLS 173

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
              +G      L +V +E   L    V  I  + +  NA         K     ++    
Sbjct: 174 SIEKG-VRFTPLEKVFEELDYLFKKQVRLIKFVDRTFNA--------NKERAIRIIEFCK 224

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
           +     ++ +    P  + + +I A       +  L + +QS + + L +++R +     
Sbjct: 225 QNSQSTQVHFE-IDPTLLGNDIINAINSSKENLFRLEIGLQSFNPQTLDAIDRFYDIDRI 283

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD-----LVDKIGY 359
            + + ++   +  I +  D I G P E    F+ ++D       D++  
Sbjct: 284 DKNLKKLMENKKAI-VHLDLIAGLPFEDFLSFKKSLDRTILYFADEVQL 331


>gi|170754665|ref|YP_001782247.1| putative B12-binding Fe-S oxidoreductase [Clostridium botulinum B1
           str. Okra]
 gi|169119877|gb|ACA43713.1| putative cobalamin-dependent enzyme [Clostridium botulinum B1 str.
           Okra]
          Length = 561

 Score = 71.5 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 49/308 (15%), Positives = 105/308 (34%), Gaps = 34/308 (11%)

Query: 60  DDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILR 119
           + ADL+   +C+I           L  +  L N          +V  G     + E  LR
Sbjct: 54  EKADLVAF-SCYIWN---------LEYVEELANLIKLVKPSTEIVFGGPEVSYDSESFLR 103

Query: 120 RSPIVNVVVGPQTYYRLPELLERARFG----------KRVVDTDYSVEDKFERLSIVDGG 169
           + P   V+ G         +  +              K +   +Y+ E     +  V   
Sbjct: 104 KVPGEYVIEGEGEETFREFIKCKIENKSLDRVKGLYIKTLNGIEYTGERHNISMDSVVFP 163

Query: 170 YNRKRGV---TAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEIT 226
           Y  +  +     +     GC   C +C+     G      + +V  E + L+D  V  I 
Sbjct: 164 YKEEEDLKNKIVYYEASRGCPFKCKYCLSSTLHG-VRFHDIERVKKEIKFLVDKNVKLIK 222

Query: 227 LLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV 286
            + +  N      +   K   +    ++          +       ++   ++       
Sbjct: 223 FVDRTFNCNHKFAMGIWKYILNMNTDAI---------FHFEISADLLTKEELEILSKGKE 273

Query: 287 LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDD 346
                 + VQ+ ++ +LK++NR       ++ ++ +++++ +I    D I G PGE  + 
Sbjct: 274 GRIQFEVGVQTTNNEVLKNINRHVNFETIKEKVEELKNLK-NIKQHLDLIAGLPGEDYNS 332

Query: 347 FRATMDLV 354
           F+ + + V
Sbjct: 333 FKNSFNDV 340


>gi|188583683|ref|YP_001927128.1| radical SAM domain protein [Methylobacterium populi BJ001]
 gi|179347181|gb|ACB82593.1| Radical SAM domain protein [Methylobacterium populi BJ001]
          Length = 547

 Score = 71.5 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 57/328 (17%), Positives = 111/328 (33%), Gaps = 31/328 (9%)

Query: 62  ADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRS 121
           AD + ++  HI     E     +GR         +      V V G  + +   E     
Sbjct: 77  ADAVFVSGMHI----QEGQIHDIGR---------RAHAAGKVAVLGGPSVSGAPEKYPDF 123

Query: 122 PIVNVVVGPQTYYRLPELLER--ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAF 179
             ++V        RL E+L+R  AR   +VV          +  +        KR +   
Sbjct: 124 DYLHVGEIGDATDRLIEILDRDLARPAAQVVLDTKDRLALGDFPAPAYEAVPLKRYLIGS 183

Query: 180 LTIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK 238
           L    GC   C FC +P   G +   +S  Q+  E   +I        +       +   
Sbjct: 184 LQFSSGCPYRCEFCDIPQLYGRQPRLKSPEQMCAELDAIISQPGHPAVV------YFVDD 237

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSD----CLIKAHGDLDVLMPYLHLP 294
              G +    ++L  L E +         +    ++      +++        M  + + 
Sbjct: 238 NFIGNRKATREMLPHLVEWQKKNNYPLQFACEATLNMAKQPEILELMRQA-NFMT-VFVG 295

Query: 295 VQSGSDRILKSMNRRHTAY-EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
           +++     LK +++ H A     + I+ + S    + ++S  I+G   +TD   +  +D 
Sbjct: 296 IETPEADALKGIDKTHNAAVPMYEAIETLNSY--GLEVTSGIILGLDSDTDKSEQNLIDF 353

Query: 354 VDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +D+                TP  + LE+
Sbjct: 354 IDRSAIPVLTINLLQALPKTPLWDRLER 381


>gi|163787093|ref|ZP_02181540.1| Radical SAM domain protein [Flavobacteriales bacterium ALC-1]
 gi|159876981|gb|EDP71038.1| Radical SAM domain protein [Flavobacteriales bacterium ALC-1]
          Length = 517

 Score = 71.5 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 64/333 (19%), Positives = 114/333 (34%), Gaps = 57/333 (17%)

Query: 93  SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG------ 146
            +IKE     + + G    +   ++   +P V+ +V        PELL     G      
Sbjct: 92  KKIKEKYPNTITIWGGYFASNQYKVSIEAPYVDYIVNGPGDITFPELLNTLESGDLKELP 151

Query: 147 -------------------KRVVDTDYSVEDKFERL-SIVDGGYNRKRGVTAFLTIQE-- 184
                              +++++ D   +  +  L S  D      R      T     
Sbjct: 152 HILNLIYQEKDGTITRTKKEKLLEQDTLPQLPYTHLNSFYDLENYLSRTFLGSKTFSYHS 211

Query: 185 --GCDKFCTFC-VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD 241
             GC   C+FC VVP   G   ++S   V ++ +   DN        G +   +      
Sbjct: 212 SLGCPFTCSFCAVVPIYNGRWKAKSAQSVYNDVKYFKDN-------YGIDAIEFHDNNFF 264

Query: 242 GEKCTFSDLLYSL--SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
             K    +    +   +I      R  T +    +D  +K   D       + L  ++G+
Sbjct: 265 TSKKRVIEFSELIKNDKITWWGEGRIDTINKYSDAD--LKLMKDAG--CKMIFLGAETGN 320

Query: 300 DRILKSMNRRH--TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL---- 353
           D ILK MN+    T    +    R+  +   I     F++G P +T +   A ++     
Sbjct: 321 DEILKQMNKGGTQTGQGIKDFAARLYPI--GIIPEFSFVLGMPADTPEQVMAQIEWDINF 378

Query: 354 ---VDKIGYA-QAFSFKYSPRLGTPGSNMLEQV 382
              + +I    +   + YSP   T GS + EQ+
Sbjct: 379 IKEIKEINPDAEIIIYLYSPVA-TEGSELYEQI 410


>gi|158520114|ref|YP_001527984.1| radical SAM domain-containing protein [Desulfococcus oleovorans
           Hxd3]
 gi|158508940|gb|ABW65907.1| Radical SAM domain protein [Desulfococcus oleovorans Hxd3]
          Length = 817

 Score = 71.1 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 54/305 (17%), Positives = 101/305 (33%), Gaps = 46/305 (15%)

Query: 160 FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLID 219
           F    +V  G      +   L I  GC + C FC           R +  ++  A + ++
Sbjct: 244 FPNTPVVPYGKPVHDRLR--LEIARGCTRGCRFCQAGMIYRPVRERPVEDLLALAGQALE 301

Query: 220 N-GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPR-----DM 273
             G  +++LL  +          G+      LL  +  + G   +  +    R       
Sbjct: 302 ATGYEDLSLLSLST---------GDYSRLHHLLERMLSVHGKDNVAVSVPSFRAGSLGQE 352

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
              LI++            +  ++G+ R+   +N+  T  E    +     +  ++ I +
Sbjct: 353 EMGLIRSVRKTG-----FTIAPEAGTQRLRDVINKNITEEEIVHTVSDAFGLGWNL-IKT 406

Query: 334 DFIVGFPGETDDDFRATMDLVDKI----------GYAQAFSFKYSPRLGTPGSNMLEQVD 383
            F+VG P ETD D    + LV ++                   + P+  TP      QV 
Sbjct: 407 YFMVGLPTETDADIDGIVSLVSRLARIKAPGGRGKKLHVSVAAFIPKSHTP-FQWEPQVS 465

Query: 384 ENVKAERLLCLQKKLREQQVSFNDAC------VG------QIIEVLIEKHGKEKGKLVGR 431
                E +  L+++L   +V F           G      + +  LIE   +   +  G 
Sbjct: 466 VARAKELIFSLKRRLESGKVGFKWQHPETSLLEGLFARGDRRLSALIEAAWRRGCRFDGW 525

Query: 432 SPWLQ 436
           S    
Sbjct: 526 SDSFD 530


>gi|307298494|ref|ZP_07578297.1| Radical SAM domain protein [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306915659|gb|EFN46043.1| Radical SAM domain protein [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 592

 Score = 71.1 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 40/257 (15%), Positives = 88/257 (34%), Gaps = 17/257 (6%)

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           ++VV    +    +E        Y +     A + +  GC++ C FC           R 
Sbjct: 216 RKVVKAVIADLSDYEIDPSPLVPYMKTVHDRAVMEVLRGCNRGCRFCQAGMIYRPVRERG 275

Query: 207 LSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           + ++ +  +K++   G  E++ L  +        +  E+         ++       L  
Sbjct: 276 VDELRESVQKVLKATGYDELSFLSLSTMDHSSIDVLSEEILPLLEPQRVA-------LSL 328

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
            ++        +      +      L    ++GS R+   +N+  +  +    +   ++ 
Sbjct: 329 PSTRIDSFGVKIASQIASIRK--TGLTFAPEAGSQRLRNVINKNVSEDDLMATVKAAKNS 386

Query: 326 RPDIAISSDFIVGFPGETDDDFRA---TMDLVDKIGY--AQAFSFKYSPRLGTPGSNMLE 380
                +   F+VG P E D+D          V  +G+      +  + P+  TP      
Sbjct: 387 GWQ-RVKLYFMVGLPTERDEDLEEIVRLARRVKAVGFKEVSVSAAIFIPKPHTP-FQFSP 444

Query: 381 QVDENVKAERLLCLQKK 397
           Q+ E   + RL  L+K 
Sbjct: 445 QISEVEASRRLGILRKL 461


>gi|260174169|ref|ZP_05760581.1| coproporphyrinogen III oxidase [Bacteroides sp. D2]
          Length = 376

 Score = 71.1 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 48/237 (20%), Positives = 83/237 (35%), Gaps = 28/237 (11%)

Query: 186 CDKFCTFCVV-PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK 244
           C   C +C     TR    +R +  +  E     D       L G+++         G  
Sbjct: 11  CKTRCIYCDFYSTTRSELKTRYVRALCRELAMRKD------YLKGEDIETVYF----GGG 60

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMS---------DCLIKAHGDLDVLMPYLHLPV 295
                      +I   +R  Y  SH ++++            +K    L      + + +
Sbjct: 61  TPSQLEKEDFEQIFDTIRTHYGLSHCQEITLEANPDDLTSEYLKMLSSLP--FNRISMGI 118

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
           Q+  D  LK + RRH A+   + + R R       IS D I G PGET + +   +    
Sbjct: 119 QTFDDPTLKLLKRRHNAHTAIEAVHRCREAGFQ-NISIDLIYGLPGETKERWENDLRQAV 177

Query: 356 KIGYAQAFSFKYSPRLGTPGSNMLEQ-----VDENVKAERLLCLQKKLREQQVSFND 407
            +      ++       TP  NML+Q     VDE+   +    L + L++      +
Sbjct: 178 SLNVEHISAYHLIYEEDTPIYNMLKQHQISEVDEDSSLDFFTLLIEHLQKAGFEHYE 234


>gi|30577693|emb|CAD18984.1| putative methyltransferase [Streptomyces cattleya]
          Length = 484

 Score = 71.1 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 45/232 (19%), Positives = 88/232 (37%), Gaps = 15/232 (6%)

Query: 127 VVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGC 186
           V G        E++E      +VV+ D   +   + L+ +D      RG +  L    GC
Sbjct: 152 VRGITFRDDEGEVVETPAA-PQVVNLDKLPKPARD-LADLDLYRRISRGRSGNLVTSRGC 209

Query: 187 DKFCTFCVVPYTRG-IEISRSLSQVVDEARKLID-NGVCEITLLGQNVNAWRGKGLDGEK 244
              C +C   +  G  +   S ++VVDE R+L++  G   I +   +           + 
Sbjct: 210 SYACAYCYSKHQWGVGQRRHSAARVVDEIRELVEVYGFDRIRIEDDDFVE--------DV 261

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304
               +L   +++     +  +      D+ +  +            L + V++ S  +LK
Sbjct: 262 PRMQELCDGIAKSGLQGKFEWEAKARPDLINDDMARMLRESGCFR-LLVGVETLSWNLLK 320

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
            + R        + I  + +    I + +  I+G PGETD+  R T+  +  
Sbjct: 321 RLGRPVKVDVTERAISCLTNN--GIGVQATMILGIPGETDEAMRTTITWLQA 370


>gi|332704925|ref|ZP_08425011.1| Fe-S oxidoreductase [Lyngbya majuscula 3L]
 gi|332356277|gb|EGJ35731.1| Fe-S oxidoreductase [Lyngbya majuscula 3L]
          Length = 519

 Score = 71.1 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 55/332 (16%), Positives = 110/332 (33%), Gaps = 34/332 (10%)

Query: 58  SMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEI 117
             + ADL++++   +++         L +I+  K          LV   G    +  +E 
Sbjct: 62  EFEWADLVIISAMIVQKT------DALNQIKEAKRRGK------LVAFGGPYPTSLPDE- 108

Query: 118 LRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGV- 176
             +   V+ ++  +    LP  +E  + G+       + +    +  I            
Sbjct: 109 -GKKAGVDFLILDEGEITLPMFVEALQRGETSGTFRTTEKPDVTQTPIPRYDLLELDAYD 167

Query: 177 TAFLTIQEGCDKFCTFCVVPYTRGIEISRS--LSQVVDEARKLIDNGVCEITLLGQNVNA 234
           +  +    GC   C FC +    G   SR+   +Q++ E   L + G      +  +   
Sbjct: 168 SMSVQFSRGCPFQCEFCDIIILYGR-KSRTKEPAQLLKELDYLYELGWRRGIFMVDD--- 223

Query: 235 WRGKGLDGEKCTFSDLLYSLSEIKGL----VRLRYTTSHPRDMSDCLIKAHGDLDVLMPY 290
                  G K     LL  L   +       R     S        L++   + +     
Sbjct: 224 ----NFIGNKRNVKLLLKELKVWQKEHQYPFRFNTEASVDLAADSELMELMVESN--FDA 277

Query: 291 LHLPVQSGSDRILKSMNRR-HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           + L +++  +  LK   +  +T       +D+I  +R  +   + FI+GF GE       
Sbjct: 278 VFLGIETPDEESLKLTKKFQNTRSSLTDDVDKI--IRAGLRPMAGFIIGFDGEKQGAGSR 335

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
            +  V++     A          T   N LE+
Sbjct: 336 IISFVEQAAIPTAMFGMLQALPNTALWNRLEK 367


>gi|307150364|ref|YP_003885748.1| Radical SAM domain-containing protein [Cyanothece sp. PCC 7822]
 gi|306980592|gb|ADN12473.1| Radical SAM domain protein [Cyanothece sp. PCC 7822]
          Length = 524

 Score = 71.1 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 51/320 (15%), Positives = 111/320 (34%), Gaps = 33/320 (10%)

Query: 62  ADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRS 121
           A++++++   ++++       F  +I+  K    K      V V G    +  EE   + 
Sbjct: 66  AEIVIISAMIVQKE------DFKLQIQEAKRRGKK------VAVGGPYPTSLPEE--AKI 111

Query: 122 PIVNVVVGPQTYYRLPELLERARFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAF 179
              + ++  +    LP  +E  + G+   V  ++    D            +    V   
Sbjct: 112 YGADYLILDEGEITLPLFVEALKKGETSGVFRSEGHKPDVTTTPIPRFDLLDLDAYVQMS 171

Query: 180 LTIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK 238
           +    GC   C FC +    G +  +++  Q++ E   L + G      +  +       
Sbjct: 172 VQFSRGCPFQCEFCDIITLYGRKPRTKTPQQLLAELDYLYELGWRRGVFMVDD------- 224

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM----SDCLIKAHGDLDVLMPYLHLP 294
              G K     LL  L   +      +       +     + L+    D + +   + L 
Sbjct: 225 NFIGNKRNVKLLLQELKVWQEERHYPFGFLTEASVNLAEDEELMNLMVDCNFV--SVFLG 282

Query: 295 VQSGSDRILKSMNRR-HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
           +++  +  L+   +  +T +     ID+I      +   + FIVGF GE     +   + 
Sbjct: 283 IETPDEDSLELTKKFQNTRHPLDDAIDKITRA--GLVPMAGFIVGFDGEKKGAGQRIAEF 340

Query: 354 VDKIGYAQAFSFKYSPRLGT 373
           V+++   +AF         T
Sbjct: 341 VERVAIPRAFFTMLQALPNT 360


>gi|150403526|ref|YP_001330820.1| radical SAM domain-containing protein [Methanococcus maripaludis
           C7]
 gi|150034556|gb|ABR66669.1| Radical SAM domain protein [Methanococcus maripaludis C7]
          Length = 510

 Score = 71.1 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 64/388 (16%), Positives = 139/388 (35%), Gaps = 52/388 (13%)

Query: 125 NVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGG----YNRKRGVTAFL 180
           +V+        L ++L+     + V  T     D+ +  + +       +     + A +
Sbjct: 128 DVISEGDLDAVLHDILKNNLKLESVDGTKLRTYDELDEFARIGAKIVKLHPSYPNIIAEI 187

Query: 181 TIQEGC----DKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR 236
               GC       C+FC  P   G    R+   +++E R L +NG+    +  Q      
Sbjct: 188 ETYRGCARAFSGGCSFCTEPRRYGYPKFRNSIDIIEEVRNLYENGIKYFRIGRQ---PCM 244

Query: 237 GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIK--AHGDLDV-------- 286
              L  +  T    + ++SEI+ L +   + S P  +             +         
Sbjct: 245 FSYLAKDVETTDVPVPNVSEIEKLFKGITSVSKPNVLHIDNANPSVIARHEKEGREIAKI 304

Query: 287 LMPY------LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV--------RPDIAIS 332
           L+ Y          V+S  ++++          +  + +D +  +         P +   
Sbjct: 305 LVKYCTPGNVAAFGVESFDEKVISKNCLLTEPEDVLKAVDILNEIGGKRGENGMPYLLPG 364

Query: 333 SDFIVGFPGETDDDFRATMDLVDKIGYA------QAFSFKYSPRLGTPGSNMLEQVDENV 386
            + + G  GE++D F    D + +I Y       +    +  P  GT  +  ++ V++  
Sbjct: 365 INLLSGLKGESNDTFEINYDYLKEI-YDSGNMIRRINIRQVVPFFGTDIT--VKDVEKAK 421

Query: 387 KAERL-LCLQKKLR-EQQVSFNDACVGQII---EVLIEKHGKEKGKLVGR--SPWLQSVV 439
           K + L L  ++K+R E         +       +VL+E   ++     GR    +   + 
Sbjct: 422 KRKNLFLKFKEKIRTEIDNPMLKRMLPTETILKDVLVE-FKEKNDLYFGRQFGSYPILIG 480

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGEL 467
           +  KN  IG  + +++T     ++ G++
Sbjct: 481 IAEKNVEIGKFVDIKVTGYGRRSITGKI 508


>gi|189347457|ref|YP_001943986.1| Radical SAM domain protein [Chlorobium limicola DSM 245]
 gi|189341604|gb|ACD91007.1| Radical SAM domain protein [Chlorobium limicola DSM 245]
          Length = 468

 Score = 71.1 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 53/313 (16%), Positives = 101/313 (32%), Gaps = 40/313 (12%)

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             L   R  + +         VV+ G       EE    +   + +V  +       +L+
Sbjct: 75  RTLEATRAYEIADTFRAHGKKVVLGGLHISFNAEE---AAKHADCIVIGEADNLWTTILD 131

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT----------AFLTIQEGCDKFCT 191
                   + + Y+ +D      I    Y R   V+            + +  GC   C+
Sbjct: 132 DVAGNS--LKSTYNSKDFPPVKEITPIDYARIAKVSKREKVDGTKSIPIYVTRGCPFNCS 189

Query: 192 FCVVPYTRGI-EISRSLSQVVDEARKLIDNGVCE--------ITLLGQNVNAWRGKGLDG 242
           FCV P   G    ++    +  +      +              L  +N+   + +  + 
Sbjct: 190 FCVTPNFTGKQYRAQKPELLKQQIESAKKHFFKANGRTAKPWFMLTDENLGINKKRLWE- 248

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
               F DLL    +I   V L        +    L+ A         ++   ++S     
Sbjct: 249 ----FLDLLRE-CDITFSVFLSVNFLEDPETVKKLVDA------GCNFVLAGLESIKQST 297

Query: 303 LKSMNRRH--TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
           L++ N+ H  +A +Y +IID  R     + I  +F++    +T +D    +  V K    
Sbjct: 298 LEAYNKGHVNSAEKYSKIIDDCRKA--GLNIQGNFLMNPAIDTFEDIDELVKFVTKNHIF 355

Query: 361 QAFSFKYSPRLGT 373
                  +P  GT
Sbjct: 356 MPIFQIITPYPGT 368


>gi|299138055|ref|ZP_07031235.1| Radical SAM domain protein [Acidobacterium sp. MP5ACTX8]
 gi|298599985|gb|EFI56143.1| Radical SAM domain protein [Acidobacterium sp. MP5ACTX8]
          Length = 515

 Score = 71.1 bits (173), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 59/327 (18%), Positives = 104/327 (31%), Gaps = 53/327 (16%)

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +           +    + V+  G       E  L R   V++VV  Q    + EL + 
Sbjct: 82  MIRGAIEAAQCVKEHTPTVPVIFGGWHPTLCPESTL-RESYVDIVVRGQGEATIVELAKA 140

Query: 143 AR----------------------FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFL 180
                                   F +RV   D      +E            +   A+ 
Sbjct: 141 LADRNPLDFIQGISWKKNGRLIENFERRVQPIDAFAPPAYEATDFDSYERISGKRELAYA 200

Query: 181 TIQEGCDKFCTFCV-VPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGK 238
           T   GC   C +C  +   +    + +   VV E   L+    +  + LL  N       
Sbjct: 201 T-SVGCPYACNYCTDMVVYKRRFNAYAAEHVVAELVGLVKQYRISNVALLDSNFP----- 254

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV------LMPYLH 292
                     DL  +++  +G+       +     S   I      +V       + Y+ 
Sbjct: 255 ---------VDLRRAIAIAQGIRDSGVKFTWTFQASTDFICRMSQDEVQLLADSGVSYMG 305

Query: 293 LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV-RPDIAISSDFIVGFPGETDDDFRATM 351
              +S S  +LK MN+RH      ++ +  R      I ++ + I+G+PGET+ D   T 
Sbjct: 306 FGTESTSKAVLKLMNKRHQR--VDEMYETARKASLAGIRVTFNLILGYPGETEQDRLETF 363

Query: 352 DLVDKIG--YAQAFSFK--YSPRLGTP 374
             +  IG  +         ++P  G P
Sbjct: 364 RTMSDIGRQFPNVRFSPNIFTPYPGIP 390


>gi|217077087|ref|YP_002334803.1| Fe-S oxidoreductase [Thermosipho africanus TCF52B]
 gi|217036940|gb|ACJ75462.1| Fe-S oxidoreductase [Thermosipho africanus TCF52B]
          Length = 518

 Score = 71.1 bits (173), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 44/251 (17%), Positives = 86/251 (34%), Gaps = 20/251 (7%)

Query: 124 VNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQ 183
           VN +  P   +     ++  ++    VD +           IV   + R   +   + + 
Sbjct: 106 VNFINDPDEVHADDLAIDFLKYAFEKVDYEVVRNVSLLGAEIV-KMHPRFPDIICEIEVS 164

Query: 184 EGCDK--FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD 241
            GC++  +CTFC  P      ISR +  +++E  KL  NGV    L         G   +
Sbjct: 165 LGCERKTYCTFCSEPILHPKFISRPVKDIIEEVEKLYKNGVKAFRLGRSANILAYGLDKN 224

Query: 242 GEKCTFSDLLYSLSEI----KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY------L 291
             K     +    + I      L  L    ++P  ++     +   +++++         
Sbjct: 225 SNKINVLLIKELYNGIRSVAPKLEVLHTDNANPAFIAQHFPDSARAIEIIVENNTEGDIF 284

Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV-------RPDIAISSDFIVGFPGETD 344
              V+S  + + K  N + T  +    I  +  +        P +    +FI G  GET 
Sbjct: 285 SFGVESFDEAVRKKNNIQGTVEDIDFAIKLVNEIGGIRINGIPKLLPGLNFIFGLAGETK 344

Query: 345 DDFRATMDLVD 355
             +      + 
Sbjct: 345 KSYEVLYQKLK 355


>gi|331269008|ref|YP_004395500.1| putative B12-binding Fe-S oxidoreductase [Clostridium botulinum
           BKT015925]
 gi|329125558|gb|AEB75503.1| putative B12-binding Fe-S oxidoreductase [Clostridium botulinum
           BKT015925]
          Length = 568

 Score = 71.1 bits (173), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 36/192 (18%), Positives = 73/192 (38%), Gaps = 16/192 (8%)

Query: 183 QEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG 242
             GC   C +C+          R++ +V  E +  ID  V  +  + +  NA     +D 
Sbjct: 188 SRGCPYGCKYCL-SSVDKNLRFRNIDRVKQELKYFIDKKVRLVKFVDRTFNANEKFAIDI 246

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
            K         + E     +  +  S    ++   ++             + VQ+ ++ I
Sbjct: 247 WK--------FIVEQNTDTKFHFEIS-ANILTKGQMQILSKSPKGRLQFEVGVQTTNNNI 297

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV-----DKI 357
           LK++NR       ++ ++ ++ +  +I+   D I G PGE  + F  + + V     ++I
Sbjct: 298 LKNINRHVNFENIQEKVEEVQKL-HNISQHLDLIAGLPGENLESFIKSFNDVYSIKPEEI 356

Query: 358 GYAQAFSFKYSP 369
                   K SP
Sbjct: 357 QLGFLKLLKGSP 368


>gi|290960531|ref|YP_003491713.1| oxygen-independent coproporphyrinogen III oxidase [Streptomyces
           scabiei 87.22]
 gi|260650057|emb|CBG73173.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Streptomyces scabiei 87.22]
          Length = 410

 Score = 71.1 bits (173), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 52/249 (20%), Positives = 90/249 (36%), Gaps = 41/249 (16%)

Query: 186 CDKFCTFCVV-PYTRGIEI-------SRS--LSQVVDEARKLIDNGVCEITLLGQNVNAW 235
           C   C +C    YT            SR      VVDE R           +LG +  + 
Sbjct: 39  CATRCGYCDFNTYTATELRGTGGVLASRDNYADTVVDEIRLARK-------VLGDDPRSV 91

Query: 236 RGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL---- 291
           R   + G   T       L  + G VR  +  +   +++        + + + P      
Sbjct: 92  RTVFVGGGTPTL-LAADDLVRMLGAVRDEFGLADDAEVTTE-----ANPESVDPAYLETL 145

Query: 292 --------HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGET 343
                      +QS    +LK ++R HT     + +   R+   D  ++ D I G PGE+
Sbjct: 146 RAGGFNRVSFGMQSARQHVLKILDRTHTPGRPERCVAEARAAGFD-HVNLDLIYGTPGES 204

Query: 344 DDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN--MLEQVD---ENVKAERLLCLQKKL 398
           DDD+RA++D     G     ++      GT  +      +V    ++V A+R L  ++ L
Sbjct: 205 DDDWRASLDAALGAGPDHVSAYALIVEEGTQLARRIRRGEVPMTDDDVHADRYLIAEEML 264

Query: 399 REQQVSFND 407
                 + +
Sbjct: 265 SAAGFDWYE 273


>gi|212640263|ref|YP_002316783.1| Radical SAM superfamily enzyme [Anoxybacillus flavithermus WK1]
 gi|212561743|gb|ACJ34798.1| Radical SAM superfamily enzyme [Anoxybacillus flavithermus WK1]
          Length = 501

 Score = 71.1 bits (173), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 39/203 (19%), Positives = 70/203 (34%), Gaps = 18/203 (8%)

Query: 182 IQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD 241
              GC   CTFC          S ++ ++ ++        V  I  L    N        
Sbjct: 197 TSRGCPFSCTFCD--QGHKAYRSLTMERIKEDLEFFAKIKVKHIDFLDGTFN-------- 246

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
                  +LL  L  +            P +++   I            + L +QS   +
Sbjct: 247 LNPKRTIELLNYLINLNTDWSFH-AEIKPENLTVDEINLMAKAK--FQTVELGLQSIHPQ 303

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
            LK + RR+      + I+ +  V   I+I  + I+G PGE+  D+  ++D    +G  +
Sbjct: 304 TLKYIKRRNRFSVIEKNINHLLEV--GISIVINTIIGLPGESLKDWYESLDYCFNLGKVK 361

Query: 362 AFSFKYSPRLGTPGSNMLEQVDE 384
             S        T    +  Q++E
Sbjct: 362 ILSNVLKILPNT---ELASQIEE 381


>gi|240140881|ref|YP_002965361.1| putative Fe-S oxidoreductase [Methylobacterium extorquens AM1]
 gi|240010858|gb|ACS42084.1| putative Fe-S oxidoreductase [Methylobacterium extorquens AM1]
          Length = 357

 Score = 71.1 bits (173), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 36/203 (17%), Positives = 69/203 (33%), Gaps = 12/203 (5%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISR-SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK 238
           +    GC   CT+C           R  +    + AR   ++GV  I    +N       
Sbjct: 45  VQFSRGCPHPCTYCGQRGFWTRWRHRDPVRFAAELARLHREHGVRVINFADENPTVS--- 101

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
               +K   + L   ++E   L+ +  T +        ++  +           L ++S 
Sbjct: 102 ----KKVWRTFLEALIAENVDLILVGSTRADDIVRDADILPLYKRAG--WERFLLGLEST 155

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
               L  + +  T    R+ I  +R+    I   + ++VGF  E D D+   +  +    
Sbjct: 156 DTATLDLIRKGATTTTDREAIRLLRAN--GILSMATWVVGFEEERDRDYWRGLRQLLAYD 213

Query: 359 YAQAFSFKYSPRLGTPGSNMLEQ 381
             Q      +P   TP   + E+
Sbjct: 214 PDQIQMLYVTPHRWTPYFRLAEE 236


>gi|78221818|ref|YP_383565.1| radical SAM family protein [Geobacter metallireducens GS-15]
 gi|78193073|gb|ABB30840.1| Radical SAM [Geobacter metallireducens GS-15]
          Length = 501

 Score = 71.1 bits (173), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 62/420 (14%), Positives = 132/420 (31%), Gaps = 76/420 (18%)

Query: 43  RMEDMFFSQGYERVNSMDDA-------------------DLIVLNTCHIREKAAEKVYSF 83
            +     + GYE      DA                   D++          A     + 
Sbjct: 31  YIAGALRAAGYEV--DYYDAMSLWHKWPDIQKRIEAFRPDMV----------ATTAYTAS 78

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEIL-RRSPIVNVVV---GPQTYYRLPEL 139
           +     L          ++  +    A    +E+L      V+ +V   G +T   L   
Sbjct: 79  IVEAVKLLRFAKSINPRIVTALGNVHAAFCYDEVLTHDHDAVDYIVRGEGEETLPMLCHC 138

Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTI----------------- 182
           L      K+V+   Y  +            ++     TA+  +                 
Sbjct: 139 LNAGDDPKKVLGIAYWRDGGVVVTPKAPYIHDLDNLPTAWDLVEWPIYTYRAKKNARLAI 198

Query: 183 ---QEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK 238
                GC   C+FC           +RS    V E   L +    ++ +L   +  +   
Sbjct: 199 VSSSRGCKSQCSFCSQQLFWAQSWRARSAENFVAELEMLHNVHGVQVAMLSDELPTF--- 255

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRY-TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQS 297
               ++  +  +L  + E +  V+L   T          ++  + +    + ++++ V++
Sbjct: 256 ----DRERWVRILDLMVEREVPVKLLMETRVDDILRDADIMDKYREGG--VEHIYVGVEA 309

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
           GS   L    +     + +Q ID I     DI   + F++G P +T +    T++L    
Sbjct: 310 GSQETLDLFKKDTEVAQSKQAIDLINGA--DIVSETSFVLGMPDDTPESIEQTIELAKHY 367

Query: 358 GYAQAFSFKYSPRLGTPGSNMLEQVDENV--KAERLLCLQKKL---REQQVSFNDACVGQ 412
               AF    +P      + +  +++  V  K  R   L + +   +   +   +  +G+
Sbjct: 368 NPDMAFFLAIAPWPY---AELYPELEPYVATKDYRKYNLVEPVIKPKNMTMEELERQLGK 424


>gi|255654758|ref|ZP_05400167.1| putative adenosylcobamide-dependent radical SAM superfamily protein
           [Clostridium difficile QCD-23m63]
 gi|296449504|ref|ZP_06891281.1| radical SAM domain protein [Clostridium difficile NAP08]
 gi|296878173|ref|ZP_06902188.1| radical SAM domain protein [Clostridium difficile NAP07]
 gi|296261568|gb|EFH08386.1| radical SAM domain protein [Clostridium difficile NAP08]
 gi|296430926|gb|EFH16758.1| radical SAM domain protein [Clostridium difficile NAP07]
          Length = 584

 Score = 71.1 bits (173), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 50/331 (15%), Positives = 111/331 (33%), Gaps = 37/331 (11%)

Query: 60  DDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILR 119
           ++ D+I+ +T              +G I  L ++  K   +  + + G     +  + ++
Sbjct: 53  NEYDIILFST----------YIWNVGDIVKLCDNLKKIRPNTKIALGGPEVSYDSYDAMK 102

Query: 120 RSPIVNVVVGPQTYYRLPELLERARFGKRVVD------------TDYSVEDKFERLSIVD 167
           +   V+ ++  +      +L+   +    + D                  +  + L  + 
Sbjct: 103 KYDFVDYILYGEGELIFRDLVLHLQGKMEINDVNGLVYRQGNEIIVNKPMELLQNLDEIP 162

Query: 168 GGYNRKRGVTAFLTI-----QEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGV 222
             Y           I       GC   C +C+     G     SL ++  + + LID  V
Sbjct: 163 SPYENLNPREYENRIVYYESSRGCPFNCQYCLSSTIPG-LRYFSLERIKRDLKALIDARV 221

Query: 223 CEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHG 282
            +I  + +  NA         +    +++  L +        +       + D +++   
Sbjct: 222 SQIKFIDRTFNA--------NRKVAMEIMDFLMKNDNGYTTYHFEVTAYLIDDKMLEFLA 273

Query: 283 DLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGE 342
           D    +    + VQS +++ L ++ RR    +   ++  + S R +I    D I G P E
Sbjct: 274 DCKEGLFQFEIGVQSTNEKTLDAVGRRDDFKKLSHVVQTVASYR-NIHQHLDLIAGLPYE 332

Query: 343 TDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
               F  + + V  +G             GT
Sbjct: 333 DYKSFENSFNDVFNLGIEHLQLGFLKMIKGT 363


>gi|262066479|ref|ZP_06026091.1| BchE/P-methylase family protein [Fusobacterium periodonticum ATCC
           33693]
 gi|291379811|gb|EFE87329.1| BchE/P-methylase family protein [Fusobacterium periodonticum ATCC
           33693]
          Length = 440

 Score = 71.1 bits (173), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 62/341 (18%), Positives = 126/341 (36%), Gaps = 42/341 (12%)

Query: 47  MFFSQG---YERVNSM---DDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGD 100
           +   +G   Y+  +S    +  DLI ++   +   +         R + +       G  
Sbjct: 45  ILVDEGVEEYDATSSKYSNEKFDLICIS--AVISAS--------RRAKEISKFWKDRGAY 94

Query: 101 LLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKF 160
             +   G  A    +E L     V  + GP      P  ++     K   +    V + F
Sbjct: 95  TQI--GGHYATVLSDEALEYFDTV--IKGPAEIS-FPSFIKDFVEEKPKREYFELVGNDF 149

Query: 161 ERLSIVDGGYNRKRGVTAFLTI--QEGCDKFCTFC-VVPYTRGIEISRSLSQVVDEARKL 217
           E   +       K+   +F TI    GC   CT+C V     G    +++  VV+E +  
Sbjct: 150 EYKPLNRKLLTNKKYYKSFGTIVANNGCPNKCTYCSVTKMYSGKNQLKNIEFVVNEIK-- 207

Query: 218 IDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCL 277
             N   +      N  A +   ++        L+  L ++K    +++T S   ++ + +
Sbjct: 208 -SNKYKKWVFYDPNFLADKSYAIN--------LMNELKKLK----IKWTASATINIGNDI 254

Query: 278 IKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR-HTAYEYRQIIDRIRSVRPDIAISSDFI 336
                  D     L + +++     L  +N+  +   EY++++  I+S    I++ S  +
Sbjct: 255 KMLQLMKDSGCIGLVIGLENFIQENLNGVNKGFNNVKEYKRLVSTIQSY--GISVLSTLM 312

Query: 337 VGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
           +G   +T +  R   D++++IG         +P  GTP   
Sbjct: 313 IGMETDTVESIRQIPDIIEEIGVDVPRYNILTPYPGTPFYE 353


>gi|238022577|ref|ZP_04603003.1| hypothetical protein GCWU000324_02485 [Kingella oralis ATCC 51147]
 gi|237867191|gb|EEP68233.1| hypothetical protein GCWU000324_02485 [Kingella oralis ATCC 51147]
          Length = 332

 Score = 71.1 bits (173), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 39/208 (18%), Positives = 71/208 (34%), Gaps = 12/208 (5%)

Query: 161 ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN 220
           E  S  + G     G   F+ + + C + C FC V + R  E+     +  + A  +   
Sbjct: 70  EEASCPNIGECFSYGTATFMIMGDICTRRCPFCDVGHGRPNEL--DKDEPKNLAESVAAM 127

Query: 221 GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKA 280
           G+  + +   +    R    DG    F+D +  + +     ++       R   D  +  
Sbjct: 128 GLRYVVITSVD----RDDLRDGGAQHFADCINEIRKTSPNTKIEILVPDFRGRLDIALDI 183

Query: 281 HGDLDV-LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGF 339
                  +M +          R+ K            +++ R R + P I   S  +VG 
Sbjct: 184 LAKNPPDVMNHNLETH----PRLYKQARPGADYKHSLELLRRYREMMPHIPTKSGIMVGL 239

Query: 340 PGETDDDFRATMDLVDKIGYAQAFSFKY 367
            GETDD+ R  M  +           +Y
Sbjct: 240 -GETDDEIREIMRDMRANNIEMITVGQY 266


>gi|146284086|ref|YP_001174239.1| lipoyl synthase [Pseudomonas stutzeri A1501]
 gi|172045590|sp|A4VQZ6|LIPA_PSEU5 RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|145572291|gb|ABP81397.1| lipoate synthase [Pseudomonas stutzeri A1501]
          Length = 325

 Score = 71.1 bits (173), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 34/214 (15%), Positives = 74/214 (34%), Gaps = 10/214 (4%)

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           + +    E  S  + G     G   F+ + + C + C FC V + R   +     +  + 
Sbjct: 66  HKLHSVCEEASCPNLGECFSSGTATFMIMGDICTRRCPFCDVGHGRPNAL--DPDEPKNL 123

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
           A+ + D  +  + +   +    R    DG    F+D L  + ++   ++L       R  
Sbjct: 124 AQAIADMRLKYVVITSVD----RDDLRDGGAQHFADCLREIRKLSPSIQLETLVPDYRGR 179

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
            +  +          P +         R+ KS            ++++ +   P +   S
Sbjct: 180 MEIALDITATEP---PDVFNHNLETVPRLYKSSRPGSDFEWSLDLLEKFKQRVPGVPTKS 236

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
             ++G  GETD++    M  + +         +Y
Sbjct: 237 GLMLGL-GETDEEVIEVMQRMREHDIDMLTLGQY 269


>gi|197302612|ref|ZP_03167666.1| hypothetical protein RUMLAC_01340 [Ruminococcus lactaris ATCC
           29176]
 gi|197298194|gb|EDY32740.1| hypothetical protein RUMLAC_01340 [Ruminococcus lactaris ATCC
           29176]
          Length = 586

 Score = 71.1 bits (173), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 42/298 (14%), Positives = 100/298 (33%), Gaps = 30/298 (10%)

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE-- 141
           +  +  +     K      + + G        E+L   P+V  ++  +      EL+   
Sbjct: 86  ITEVGQILRETAKILPKTAIWLGGPEVSYNAREVLENYPMVQGIMKGEGEESFTELVAYY 145

Query: 142 -----------------RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQE 184
                            R   G+ +   +  + D      + +   + +  +  + +   
Sbjct: 146 GKLKESKQLRDIEGLMFRDENGEIIETENRPILDLSTVPFVYEHIEDFQNRIIYYES-SR 204

Query: 185 GCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK 244
           GC   C++C+          R +  V  E +  ID+ V ++  + +  N      +   K
Sbjct: 205 GCPFSCSYCL-SSIDKCLRFRKIELVKKELQFFIDHEVPQVKFVDRTFNCKHDHAMAIWK 263

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304
                        KG+    +  +    +++  I+    +   +  L + +QS +   ++
Sbjct: 264 YITEHD-------KGITNFHFEVAADL-LNEEEIELIRRMRPGLIQLEIGIQSANPETIR 315

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
            ++R     + R  ++RIR    ++    D I G P E  + F  + + V  +   Q 
Sbjct: 316 EIHRTMDLKKVRAKVERIREK-GNVHQHLDLIAGLPYENYESFGHSFNEVYAMHPDQL 372


>gi|298504320|gb|ADI83043.1| radical SAM domain iron-sulfur cluster-binding oxidoreductase
           [Geobacter sulfurreducens KN400]
          Length = 452

 Score = 71.1 bits (173), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 39/210 (18%), Positives = 78/210 (37%), Gaps = 20/210 (9%)

Query: 168 GGYNRKRGVTAFLTIQEGCDKFCTFCV-VPYTRGIEISRSLSQVVDEARKLIDNGVCEIT 226
           G ++      A +    GC   CTFC     T G  + R   +VV+E + + +  V    
Sbjct: 177 GYFSEWFTPLASIRTSLGCTARCTFCALWSITGGAYLRRDPDRVVEELKGIAEPNV---- 232

Query: 227 LLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS--HPRDMSDCLIKAHGDL 284
                   +       +    + L   +    G+ +  +  +          L +A  D+
Sbjct: 233 -------FFCDDESMCDTKRMALLADRIRAA-GIRKNYFLYARVDTIVRHPELFRAWADI 284

Query: 285 DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETD 344
              +  + + ++  SD  L +M +  T  +  +    +R +   + + + F+V  P  + 
Sbjct: 285 G--LKQVFVGMEDFSDARLAAMKKGVTTDQQARAATILRDL--GVMMYASFMVD-PDYSR 339

Query: 345 DDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
           DDFRA +  + K+    A     +P  GT 
Sbjct: 340 DDFRALVAYIRKLRLTYATFTVMTPLPGTE 369


>gi|144897660|emb|CAM74524.1| Coenzyme B12-binding:Radical SAM [Magnetospirillum gryphiswaldense
           MSR-1]
          Length = 439

 Score = 71.1 bits (173), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 55/302 (18%), Positives = 104/302 (34%), Gaps = 49/302 (16%)

Query: 105 VAGCVAQAEGEEILRRSPIVNVVV---GPQTYYRLPELLE--------------RARFGK 147
           + G    A  EE L   P  + V+   G ++   L E L                   G 
Sbjct: 100 LGGVHVTALPEETLTLLPEADSVILGEGERSMVLLAEALATGTGLDQVPGLIYRDGDGGL 159

Query: 148 RVVDTDYSVEDKFERLSIV--------------DGGYNRKRGVTAFLTIQEGCDKFCTFC 193
           R V        + + L +                GG++R+ GV        GC   C FC
Sbjct: 160 RAVAAQPWQAPQLDPLPLPALDLYPMERFTSDFWGGHDRRMGV---QITTRGCPYHCEFC 216

Query: 194 VVP-YTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFSDLL 251
                + G     S+ +V++E+ +L +  G   +                 +     D+ 
Sbjct: 217 ASGGESWGKLRYHSIDRVIEESWRLKNQFGADYLVFNDDTFTV--------KPSRCLDIA 268

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
             L   +GL      T+    +S+ L+         M  +   V+SGS+ +L+ + +  T
Sbjct: 269 QRLRA-EGLDLPFMVTARVDAISENLLAELAAAGCFM--ITYGVESGSNEVLRHIGKNTT 325

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
               R+ +    + +  I +  +F+ G   + +   ++T+DL  ++    +      P  
Sbjct: 326 TDLARKAVRD--AQKHGIKVVGNFMFGHYPDDEASCQSTLDLAQELACDVSQFSITVPYP 383

Query: 372 GT 373
           GT
Sbjct: 384 GT 385


>gi|298383728|ref|ZP_06993289.1| oxygen-independent coproporphyrinogen III oxidase [Bacteroides sp.
           1_1_14]
 gi|298263332|gb|EFI06195.1| oxygen-independent coproporphyrinogen III oxidase [Bacteroides sp.
           1_1_14]
          Length = 376

 Score = 70.7 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 48/233 (20%), Positives = 86/233 (36%), Gaps = 20/233 (8%)

Query: 186 CDKFCTFCVV-PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR---GKGLD 241
           C   C +C     TR    +R +  +        + G+ +  L G+ +       G    
Sbjct: 11  CKTRCIYCDFYSTTRSELKTRYVHAL------CHELGMRKEYLKGEPIETIYFGGGTPSQ 64

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPR--DMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
            E+  F  +  ++ E  G+   R  T      D+S   +K    L      + + +Q+  
Sbjct: 65  LEEADFKRIFETIRENYGMEHCREITLEANPDDLSQEYLKMLSSLP--FNRISMGIQTFD 122

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
           D  L+ + RRH +    + + R R       IS D I G PGET   +   +    ++  
Sbjct: 123 DTTLRLLKRRHNSQTAIEAVRRCREAGFQ-NISIDLIYGLPGETKGRWENDLRQAIRLDV 181

Query: 360 AQAFSFKYSPRLGTPGSNMLEQ-----VDENVKAERLLCLQKKLREQQVSFND 407
               ++  +    TP  NML+Q     VDE+   +    L + L+       +
Sbjct: 182 EHISAYHLTYEEDTPIYNMLKQHQIEEVDEDSSLQFFTLLIEHLQNAGYEHYE 234


>gi|317153316|ref|YP_004121364.1| Radical SAM domain-containing protein [Desulfovibrio aespoeensis
           Aspo-2]
 gi|316943567|gb|ADU62618.1| Radical SAM domain protein [Desulfovibrio aespoeensis Aspo-2]
          Length = 439

 Score = 70.7 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 39/215 (18%), Positives = 77/215 (35%), Gaps = 19/215 (8%)

Query: 176 VTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW 235
            +A L    GC   C+FC            S  ++  + ++LI +G+  I +  +N  A 
Sbjct: 183 PSALLETSRGCPGSCSFCQRKGWDKKLRFFSEEKIYTDFQELIFSGINNIWITDENFTAN 242

Query: 236 RGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPV 295
            G+           +L   +E+KG   L+   S    +    I         +  +   V
Sbjct: 243 LGRA--------KKILNKFAELKGTHSLKIAISSWAKIDKEFISVAQKAG--VSVISFGV 292

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
           +S +  IL    +        +I++    V   +    +FIVG P + ++  + +++   
Sbjct: 293 ESKNRSILDYYKKSIDFKLLDEILEEADRV--GVFTIGNFIVGAPDDDEETIQESLNYAI 350

Query: 356 KIGYAQAFS--FKYSPRLGTPGSNMLEQVDENVKA 388
              +         Y       GS + E + + VK 
Sbjct: 351 HSRFDDVNVKLLDYMI-----GSELYEGLPDKVKE 380


>gi|167947269|ref|ZP_02534343.1| involved in methylthiolation of isopentenylated A37 derivatives in
           tRNA, Fe-S protein [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 62

 Score = 70.7 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 1/49 (2%)

Query: 419 EKHGKE-KGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGE 466
           E+  K+   +L GR+   + V  +     IG+ ++VRIT+   ++L GE
Sbjct: 2   ERLSKKSPNQLAGRTENNRVVNFDGPAELIGEFVEVRITEALPNSLRGE 50


>gi|170725584|ref|YP_001759610.1| putative radical SAM protein [Shewanella woodyi ATCC 51908]
 gi|169810931|gb|ACA85515.1| conserved hypothetical radical SAM protein [Shewanella woodyi ATCC
           51908]
          Length = 312

 Score = 70.7 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 42/195 (21%), Positives = 71/195 (36%), Gaps = 15/195 (7%)

Query: 188 KFCTFCVV---PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK 244
             CT+C V    Y  G E+S    Q+     +        I               D  K
Sbjct: 43  GGCTYCNVASFSYEHGTELSIP-EQLNKGRERFAGRTSKYIAYF-----QAYTSTYDEYK 96

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL--DVLMPYLHLPVQSGSDRI 302
              +    ++  I   +      + P  +SD +I+         +  +L L +QS SD+ 
Sbjct: 97  VLKAKYDEAI--IDPDIVGLCVGTRPDCVSDDVIELLAGYQARGIDVWLELGLQSASDKT 154

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           LK +NR HT  +Y   + R R+    I + +  I+G PGE   D+  ++  V + G    
Sbjct: 155 LKRINRGHTLADYLDTVTRARAK--GIKVCTHLILGLPGEEHQDYLNSLHAVLQAGVDGL 212

Query: 363 FSFKYSPRLGTPGSN 377
                    G+  + 
Sbjct: 213 KLHPLHIVEGSTMAK 227


>gi|37521883|ref|NP_925260.1| hypothetical protein glr2314 [Gloeobacter violaceus PCC 7421]
 gi|35212882|dbj|BAC90255.1| glr2314 [Gloeobacter violaceus PCC 7421]
          Length = 537

 Score = 70.7 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 52/345 (15%), Positives = 104/345 (30%), Gaps = 52/345 (15%)

Query: 55  RVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG 114
           R      AD ++++  HI           + +I  L +   K        V+GC      
Sbjct: 80  RSEDYRWADAVIVSGMHI-------QRPQIRKINELAHRWGKITALGGPSVSGC------ 126

Query: 115 EEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKR 174
            E      ++++        R+ E ++                +  ERL +         
Sbjct: 127 PEYYPDFDLIHIGELGDATDRMIEYIDMHTE----RPASQMRFETAERLPLDRFPIPAYD 182

Query: 175 GVT------AFLTIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVCEITL 227
            +         +    GC   C FC +P   G     ++  QV  E   ++ +G      
Sbjct: 183 KINLGNYFLGSVQFSSGCPYACEFCDIPALYGRNPRLKTPEQVTAELDAMLRSG------ 236

Query: 228 LGQNVNAWRGKGLD--GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLD 285
              N  A      +  G +   +DLL  L  I    R  Y      + +           
Sbjct: 237 ---NPGAVYFVDDNFIGNRRAVADLLPHL--IDWQKRNGYPVQFACEATLN----IAQSP 287

Query: 286 VLMPYL--------HLPVQSGSDRILKSMNRRHT-AYEYRQIIDRIRSVRPDIAISSDFI 336
            ++  +           +++     LKS+++ H  +    + I  + S    + + S  I
Sbjct: 288 KILEMMREAYFCTVFCGIETPEPDALKSISKTHNLSMPILEAIGTLNSY--GMEVVSGII 345

Query: 337 VGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +G   +T +     ++ +                  TP  + L+Q
Sbjct: 346 IGLDTDTPETGERILEFIRLSQLPMLTINLLHALPRTPLWDRLQQ 390


>gi|170287962|ref|YP_001738200.1| radical SAM domain-containing protein [Thermotoga sp. RQ2]
 gi|170175465|gb|ACB08517.1| Radical SAM domain protein [Thermotoga sp. RQ2]
          Length = 599

 Score = 70.7 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 44/226 (19%), Positives = 88/226 (38%), Gaps = 17/226 (7%)

Query: 177 TAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAW 235
            A + +  GC + C FC           RSL  +++   +++ N G  E++LL  +    
Sbjct: 251 RAIIEVARGCTRGCRFCHASVYYRPVRERSLENILENVEEMLKNTGYEEVSLLSLSTMDH 310

Query: 236 RGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPV 295
              G        S+LL   SE K  V +  T          +      +      L    
Sbjct: 311 TQIGE-----IVSELLKRYSEKKIAVSIPSTRMDR--FGVEIAGRIASVRK--TGLTFAP 361

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
           ++ + R+   +N+  +  +    ++  +       +   F++G PGET++D    ++L++
Sbjct: 362 EASTQRLRNIINKNISEEDIFATLEAAKKSGWR-RVKLYFMMGLPGETNEDLEEMVELLE 420

Query: 356 KI---GY--AQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQK 396
           K+   G+    A    + P+  TP      Q+      ER+  L++
Sbjct: 421 KVKRLGFKEVSASVSVFVPKPHTP-FQFARQISPEEAHERIRTLKR 465


>gi|51244699|ref|YP_064583.1| hypothetical protein DP0847 [Desulfotalea psychrophila LSv54]
 gi|50875736|emb|CAG35576.1| conserved hypothetical protein [Desulfotalea psychrophila LSv54]
          Length = 634

 Score = 70.7 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 57/322 (17%), Positives = 113/322 (35%), Gaps = 53/322 (16%)

Query: 153 DYSVEDKFERLSIVDGGYNRKRGVTAF------LTIQEGCDKFCTFCVVPYTRGIE-ISR 205
             S  D    L  +   +  ++ + A       +TI  GC   C+FC +   +G E +SR
Sbjct: 314 SESELDAVYALPFLRTSHKSQKNIPALQMIKDSVTIVRGCAGNCSFCAITRHQGAEIVSR 373

Query: 206 SLSQVVDEARKLIDNGVCEITL--LGQNVNAWRG-------------------KGLDGEK 244
           S   +V E + + +      T+  LG       G                     L+ ++
Sbjct: 374 SHRSIVKECKLIAEEENFHGTISDLGGPTANLYGTKCRIGGCNKRDCLFPKTCPNLEIDE 433

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL----HLPVQSGSD 300
             F  LL  +S +KG+  L  ++    ++     +      ++  +      +  +  +D
Sbjct: 434 ERFLRLLKDVSSLKGVKHLFVSSGMRMELLLKTPRLM--EKIIAEHTPGALKIAPEHTND 491

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSV----RPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
            +L  M++  +     + I+R R +    +  I IS   I   PG T    +   + + K
Sbjct: 492 EVLTLMHKE-SHDLLVRFIERCREIAKKRKKPIYISPYIITSHPGSTLKHAKCLAEDLKK 550

Query: 357 IGYAQAFSFKYSPRLGTPGSNML-----EQ------VDENVKAERLLCLQKKLREQQVSF 405
           +         ++P  GT  + M       Q      V +N+   +      +       F
Sbjct: 551 LDLKVRAFQDFTPTPGTISTAMYVTERHPQSKKSLFVPKNISERKAQRNIVEKEVLSREF 610

Query: 406 NDACVGQIIEVLIEKHGKEKGK 427
           +       ++V  EK  ++ GK
Sbjct: 611 DKKK--SKVQV-SEKFSRKPGK 629


>gi|197116558|ref|YP_002136985.1| radical SAM domain iron-sulfur cluster-binding oxidoreductase
           [Geobacter bemidjiensis Bem]
 gi|197085918|gb|ACH37189.1| radical SAM domain iron-sulfur cluster-binding oxidoreductase
           [Geobacter bemidjiensis Bem]
          Length = 828

 Score = 70.7 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 43/237 (18%), Positives = 94/237 (39%), Gaps = 26/237 (10%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGK 238
           + I  GC + C FC   Y       RS  +V++   + + N G  E++LL  +   +   
Sbjct: 255 VEISRGCTRGCRFCQAGYIYRPVRERSPERVLEIVEETLGNTGYDEVSLLSLSTGDYGCL 314

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
                      L+   +  K  V L   +     +S  + +    +        L  ++G
Sbjct: 315 T-----PLLKGLMDRYASQKKAVSLP--SMRVGSLSPEMAEEIRRVRK--TGFTLAPEAG 365

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA--ISSDFIVGFPGETDDDFRATMDLVDK 356
           S+R+ + +N+  T      +++  R+V  +    I   F++G P ET +D    +++  +
Sbjct: 366 SERLRRVINKGITEE---ALLENARAVYSNGWRLIKLYFMIGLPTETMEDLDRIVEISRE 422

Query: 357 I----GYA------QAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQV 403
           +     +A            + P+  TP      Q+ E    ++   L+ +L+++++
Sbjct: 423 VKRQGKFAGNGGDVNVSVSSFVPKPHTP-FQWEPQITEEEIVDKQRHLRGELKKKKL 478


>gi|39995314|ref|NP_951265.1| radical SAM domain-containing protein [Geobacter sulfurreducens
           PCA]
 gi|39982076|gb|AAR33538.1| radical SAM domain protein [Geobacter sulfurreducens PCA]
          Length = 452

 Score = 70.7 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 40/210 (19%), Positives = 78/210 (37%), Gaps = 20/210 (9%)

Query: 168 GGYNRKRGVTAFLTIQEGCDKFCTFCV-VPYTRGIEISRSLSQVVDEARKLIDNGVCEIT 226
           G ++      A +    GC   CTFC     T G  + R   +VV+E + + +  V    
Sbjct: 177 GYFSEWFTPLASIRTSLGCTARCTFCALWSITGGAYLRRDPDRVVEELKGIAEPNV---- 232

Query: 227 LLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS--HPRDMSDCLIKAHGDL 284
                   +       +    + L   +    G+ +  +  +          L +A  D+
Sbjct: 233 -------FFCDDESMCDTKRMALLADRIRAA-GIRKNYFLYARVDTIVRHPELFRAWADI 284

Query: 285 DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETD 344
              +  + + ++  SD  L +M +  T  +  +    +R +   + + + F+V  P  + 
Sbjct: 285 G--LKQVFVGMEDFSDARLAAMKKGVTTDQQARAATILRDL--GVMMYASFMVD-PDYSR 339

Query: 345 DDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
           DDFRA +  V K+    A     +P  GT 
Sbjct: 340 DDFRALVAYVRKLRLTYATFTVMTPLPGTE 369


>gi|307595104|ref|YP_003901421.1| Radical SAM domain-containing protein [Vulcanisaeta distributa DSM
           14429]
 gi|307550305|gb|ADN50370.1| Radical SAM domain protein [Vulcanisaeta distributa DSM 14429]
          Length = 571

 Score = 70.7 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 74/427 (17%), Positives = 139/427 (32%), Gaps = 48/427 (11%)

Query: 84  LGRIRNLKNSRIKE--GGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
           + RI N+    IK   G                     +     VV G        ELL 
Sbjct: 91  IERIANIITKPIKILGGPVARFGYGSAGGTIAIPRSRFQRYYDLVVTG-DVDLVTYELLR 149

Query: 142 RARFGKRV----VDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDKF----CT 191
                 +V       DY + +KF  L   IV    N  R +   L   + C ++    C+
Sbjct: 150 NNYQSSKVSPALTHIDYGLINKFAVLGAHIVTQHPNYGRNLIIELETYKSCPRYISGGCS 209

Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQ-NVNAWRGKG---LDGEKCTF 247
           FC      G    R    +V+E + L   GV    L  Q +  A+       LD  +   
Sbjct: 210 FCAT-VRYGPVKYRDAKAIVEEVKALYSLGVRHFRLGRQADFYAYMAHDTGKLDFPRPNP 268

Query: 248 SDLLYSLSEI----KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY------LHLPVQS 297
             +   L  I      L  L     +P  +     ++      LM Y        + +++
Sbjct: 269 EAIESLLVGIRNAAPELETLHIDNVNPGTIYHWPRESVEVTKTLMKYHTPGDVAAMGIET 328

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSV--------RPDIAISSDFIVGFPGETDDDFRA 349
              R++K  N +    E    +  I  +         P++    +F++G PGET + FR 
Sbjct: 329 ADPRVVKLNNLKVMPDEAYFAVKTISELGRVRGWNGMPELLPGINFVIGLPGETRETFRL 388

Query: 350 TMDLVDK-----IGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVS 404
            ++ + K     +   +    +      TP  +  + + + ++  R   L       +  
Sbjct: 389 NIEFLKKLLDNDVWVRRVNIRQVLVLPPTPLWSQADDIKQLLREHRRYFL-AFKYWVRRY 447

Query: 405 FNDACVGQIIE---VL---IEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDV 458
           F+   + +++    VL     +     G    +      ++       +G  I V +++ 
Sbjct: 448 FDHEMLRKVVPKSVVLRRVFTEVHYGDGTYARQVGSYPLLIYIPAKIELGRWIDVVVSEH 507

Query: 459 KISTLYG 465
              ++ G
Sbjct: 508 GFRSVIG 514


>gi|291561901|emb|CBL40704.1| Fe-S oxidoreductase [butyrate-producing bacterium SS3/4]
          Length = 617

 Score = 70.7 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 57/321 (17%), Positives = 112/321 (34%), Gaps = 35/321 (10%)

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +  I  +     K   ++ + + G     + +++L R P V  V+  +      EL+   
Sbjct: 70  ISYIMEIVRDVKKVLPEVEIWLGGPEVSYDAKKVLTREPDVCGVMRGEGELTFTELVRAY 129

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQE------------------- 184
              + +      ++         + G   +RG    L++ E                   
Sbjct: 130 LKREELCAASLDLDHIPGITYRAESGEVVERGPQRLLSLDEIPFYYDDMAGFENRIVYYE 189

Query: 185 ---GCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD 241
              GC   C++C+          RSL  V+ E +  +D+ V ++  + +  N  R   L 
Sbjct: 190 SSRGCPFSCSYCL-SSIDKTVRFRSLDLVLPELQFFLDHKVPQVKFVDRTFNCKRDHTLG 248

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
             +         +    G+    +  S      +  ++  G +   +  L + VQS +  
Sbjct: 249 IWRYL-------VEHDNGITNFHFEVSADI-FDEEELELIGKMRPGLIQLEIGVQSTNPD 300

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
            +K ++R     + +Q +DR+   R +     D I G P E  + F  + D V ++   Q
Sbjct: 301 TIKEIHRHMDLVKLKQAVDRVYDYR-NTHQHLDLIAGLPYENYESFMRSFDDVYRMRPDQ 359

Query: 362 AFSFKYSPRLGTPGSNMLEQV 382
                     G   S M EQV
Sbjct: 360 LQMGFLKVLKG---SYMEEQV 377


>gi|240170544|ref|ZP_04749203.1| methyltransferase [Mycobacterium kansasii ATCC 12478]
          Length = 442

 Score = 70.7 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 55/339 (16%), Positives = 113/339 (33%), Gaps = 42/339 (12%)

Query: 79  KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPE 138
                   +  L     +    + + +   +A    E ILR+    + VV         +
Sbjct: 56  SCIDTFAEVLWLAQRARESWPGVQIALGNVIATLNYERILRQYDCFDFVVVGDGEVGFTQ 115

Query: 139 LLERARFGKRVVDTDYSVE-----------------DKFERLSIVDGGYNRKRGVTAFLT 181
           L      G  + D                       D+  R +  +       G +A + 
Sbjct: 116 LALAVANGDEIADVPGVARRDARGQIVCSPSTLVDLDRLPRAAREELPTVLADGFSAAVF 175

Query: 182 IQEGCDKFCTFCVVPYT-----RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR 236
              GC   CTFC          R    ++S+  VVDE   L+ +       +  ++   +
Sbjct: 176 TTRGCPYRCTFCGTGAMSAILGRNSYRAKSVDSVVDEITYLVSDFDINFVSITDDLFVSK 235

Query: 237 GKGLDGEKCTF-SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPV 295
             G       F S +L    ++  +V +R  +    D+   L +A       +  + + +
Sbjct: 236 HPGSQQRAVEFASAILRRGIDVNFMVDIRLDSVVDLDVFRHLHQA------GLRRVFVGI 289

Query: 296 QSGSDRILKSMNRR--HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
           ++GS   L++  ++  +   +  + I+ +  +  D+   +  I+  P    ++ R T  L
Sbjct: 290 ETGSYEQLRAYRKQIINRGQDPAETINALLRLGIDVIPGT--IMFHPTVRPEELRETARL 347

Query: 354 VDKIGYAQAFSF--KYSPRLGTP-------GSNMLEQVD 383
           +    Y   F F  K +P  GTP          + ++  
Sbjct: 348 LRATRYRHPFKFLSKITPYPGTPLYQAYSAAGYLTDEWP 386


>gi|253699203|ref|YP_003020392.1| radical SAM protein [Geobacter sp. M21]
 gi|251774053|gb|ACT16634.1| Radical SAM domain protein [Geobacter sp. M21]
          Length = 557

 Score = 70.7 bits (172), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 38/182 (20%), Positives = 66/182 (36%), Gaps = 17/182 (9%)

Query: 178 AFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG 237
             + +  GC + C FC   +      SRSL  V +E  K +  G     L+   V+ + G
Sbjct: 247 HLVELSRGCPRACRFCAAGFIYLPYRSRSLEGVREEVLKGVAQGRKVG-LVAAAVSDYSG 305

Query: 238 KGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQS 297
            G          L   +    G      ++     +   +I+A          + L  + 
Sbjct: 306 IGA---------LCGEIVAAGGKFS--VSSFRIDHLDAGMIEALKASGQ--KSVALAPEG 352

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI-AISSDFIVGFPGETDDDFRATMDLVDK 356
           GS R+   + +     +     D +  +  DI  +   FI+G P ET+ D    + LV +
Sbjct: 353 GSQRLRDLVKKGIDEEQILAACDTL--ISHDILNLKLYFIIGLPTETEQDLEELVLLVTR 410

Query: 357 IG 358
           I 
Sbjct: 411 IR 412


>gi|222056763|ref|YP_002539125.1| radical SAM protein [Geobacter sp. FRC-32]
 gi|221566052|gb|ACM22024.1| Radical SAM domain protein [Geobacter sp. FRC-32]
          Length = 624

 Score = 70.7 bits (172), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 33/201 (16%), Positives = 70/201 (34%), Gaps = 14/201 (6%)

Query: 182 IQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD 241
           +  GC+  C FC            SL ++  E   L+   V ++ +L    N        
Sbjct: 188 LSRGCNFACEFCFDHKGGVGVRHFSLERITQELNFLVKRKVAQVFVLDSTFNQDM----- 242

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
                   +L  + ++   +   +       +   L +   +   +   L + +QS    
Sbjct: 243 ---KRAKKILRLIKKVAPHIHFHFEV-RSEFIDAELARLFAE---ITCSLQIGLQSADPL 295

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
           +L+++ R     ++   I  + +V        D I G PG++   FR ++D    +    
Sbjct: 296 VLRNVGRVFNRQDFSIKIGMLNNV--GAIFGFDLIYGLPGDSLAGFRQSLDFALSLYPNH 353

Query: 362 AFSFKYSPRLGTPGSNMLEQV 382
              F  +   GT  +   E++
Sbjct: 354 LDIFPLAVLPGTRLAERAEEL 374


>gi|187933907|ref|YP_001887055.1| radical SAM protein [Clostridium botulinum B str. Eklund 17B]
 gi|187722060|gb|ACD23281.1| putative cobalamin-dependent enzyme [Clostridium botulinum B str.
           Eklund 17B]
          Length = 554

 Score = 70.7 bits (172), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 81/220 (36%), Gaps = 14/220 (6%)

Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           L     GK   +    +    + +   +   +    +  +     GC   C +C+   + 
Sbjct: 138 LHYKLDGKIYSNEKRPLMSMDDLVFPYEENEDLNNKIVYYEA-SRGCPFNCKYCLSSTSH 196

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS-LSEIK 258
           G     ++ +V+ E +  ID  V  +  + +  N             FS  ++  L E  
Sbjct: 197 G-VRFLNIERVLKELQYFIDKRVRLVKFVDRTFNCNY---------KFSMAIWKFLIEAD 246

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
              +  +  S      +  IK             + VQ+ +D +L ++NR     + ++ 
Sbjct: 247 TETKFHFEISADILKDEE-IKLLSKAPKGRFQFEVGVQTTNDTVLNNINRFVNFEDIKEK 305

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           +D + +++ +I    D I G PGE  + F  + + V KI 
Sbjct: 306 VDELMAIK-NIQQHLDLIAGLPGEDYESFINSFNDVYKIR 344


>gi|166363850|ref|YP_001656123.1| hypothetical protein MAE_11090 [Microcystis aeruginosa NIES-843]
 gi|166086223|dbj|BAG00931.1| hypothetical protein MAE_11090 [Microcystis aeruginosa NIES-843]
          Length = 526

 Score = 70.7 bits (172), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 48/308 (15%), Positives = 99/308 (32%), Gaps = 28/308 (9%)

Query: 72  IREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSP---IVNVVV 128
           +      +++   G IR       K   +  V+V G       E++  + P   IV+V  
Sbjct: 115 VTTAYYGELWRNQGLIRRGLQQARKYHPEARVIVGGGAVSVFYEQLKTKLPTGTIVSVGE 174

Query: 129 G-----------PQTYYRLPELLERARFGKRVVDTDYSVE------DKFERLSIVDGGYN 171
           G             +  R   + E     + + ++   +E      D    +      Y 
Sbjct: 175 GETLLEKFLSGRNFSDERCYVVGETTPRPRLIHESPTPLEKSACNYDYIASIWPEFSYYF 234

Query: 172 RKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR-SLSQVVDEARKLIDNGVCEITLLGQ 230
           ++      +  + GC   C +C+     G ++      +VV E R+L D G+        
Sbjct: 235 QENDFYIGVQTKRGCPHNCCYCIYTVVEGKQVRINPADEVVKEMRQLYDRGIRNFWFTDA 294

Query: 231 NVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY 290
                R    D E     +LL  +                 +++  L          M Y
Sbjct: 295 QFIPTRKFINDVE-----ELLEKILASGMKDIRWAAYIRADNLTPKLCDLMVKTG--MNY 347

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
             + + SGS  +++ M   +      Q    +++   +  +S ++      ET +  R T
Sbjct: 348 FEIGITSGSQELVRKMRMGYNLRTVLQNCRDLKAAGFNDLVSVNYSFNVIDETLETIRQT 407

Query: 351 MDLVDKIG 358
           +    ++ 
Sbjct: 408 IAYHRELE 415


>gi|91201045|emb|CAJ74103.1| hypothetical protein kuste3342 [Candidatus Kuenenia
           stuttgartiensis]
          Length = 453

 Score = 70.7 bits (172), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 60/306 (19%), Positives = 105/306 (34%), Gaps = 33/306 (10%)

Query: 78  EKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLP 137
            K   +L R++ +    IK      ++V G       EE+LR   +   +VG      LP
Sbjct: 76  RKSVYYLPRVKEIVR-LIKRLTSAQIIVGGSGFSLFPEEVLRYLQLEMGIVGEGEIS-LP 133

Query: 138 ELLERARFGKRVVDTDY----------------SVEDKFERLSIVDGGYNRKRGVTAFLT 181
           + ++    G  + D                   SVE    +  +++     + G  A + 
Sbjct: 134 QYIDVIIHGGEINDIPNLCYIKDGKYTRNNTLCSVEPFTPKRDLLNNNKYMELGGMANIQ 193

Query: 182 IQEGCDKFCTFCVVPYTRGI-EISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKG 239
            + GC   CT+C  P   G     R   ++VDE ++L    GV  +  +    N      
Sbjct: 194 SKRGCPFHCTYCTYPSLNGNTVRLREPLEIVDEIKELNSEYGVDYVFFVDDIFNCP---- 249

Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
              EK T +     +     +    + T         L+      D     +     +GS
Sbjct: 250 ---EKHTVALCEEIIRHELKIDWACFATPKGMTKELALLM----SDAGCKGIEFGTDAGS 302

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
            + LK++ +  T  +     +   S+  ++  +   IVG P E D     T  L +KI  
Sbjct: 303 RKTLKAIGKSFTIEDIAFATECCNSI--NLPNAHYIIVGGPDEDDSTLSETFSLFNKIEP 360

Query: 360 AQAFSF 365
                F
Sbjct: 361 TAVIVF 366


>gi|218439905|ref|YP_002378234.1| radical SAM protein [Cyanothece sp. PCC 7424]
 gi|218172633|gb|ACK71366.1| Radical SAM domain protein [Cyanothece sp. PCC 7424]
          Length = 522

 Score = 70.7 bits (172), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 46/312 (14%), Positives = 102/312 (32%), Gaps = 36/312 (11%)

Query: 72  IREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVV---- 127
           +      +++  LG IR       K   +  +VV G       E++    P   +V    
Sbjct: 111 VTTAYYGELWRNLGLIRRGLKRAQKYHPEAKIVVGGGAVSVFYEQLKTMLPQGTIVSVGE 170

Query: 128 --------VGPQTYYRLPELLERARFGKRVVDTDYSVE--------DKFERLSIVDGGYN 171
                   +  + +      +  A   +  +  ++  E        D  + +      Y 
Sbjct: 171 GEILLERLIKNEDFSDQRCYVVGATEPREKMIHEFPTELEKSACNYDYIQSIWPEFDYYF 230

Query: 172 RKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR-SLSQVVDEARKLIDNGVCEITLL-G 229
           +       +  + GC   C +C+     G ++      +VV E R+L + G+        
Sbjct: 231 QDNDFYIGVQTKRGCPHNCCYCIYTVVEGKKVRINPADEVVKEMRQLYERGIRNFWFTDA 290

Query: 230 QNVNAWRGKGLDGEKCTFSDLLYSLSEI--KGLVRLRY-TTSHPRDMSDCLIKAHGDLDV 286
           Q + A +            D +  L +I   G+  + +       +++  L         
Sbjct: 291 QFIPARKFID---------DTVELLQKIVDSGMTDIHWAAYIRADNLTPQLCDLMVKTG- 340

Query: 287 LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDD 346
            M Y  + + SGS  +++ M   +      Q    +++   +  +S ++      ET D 
Sbjct: 341 -MNYFEIGITSGSQELVRKMRMGYNLRTVLQNCRDLKAAGFNDLVSVNYSFNVIDETFDT 399

Query: 347 FRATMDLVDKIG 358
            R T+    ++ 
Sbjct: 400 IRQTIAYHRELE 411


>gi|308535148|ref|YP_002136920.2| radical SAM domain iron-sulfur cluster-binding oxidoreductase
           [Geobacter bemidjiensis Bem]
 gi|308052493|gb|ACH37124.2| LOW QUALITY PROTEIN: radical SAM domain iron-sulfur cluster-binding
           oxidoreductase [Geobacter bemidjiensis Bem]
          Length = 616

 Score = 70.7 bits (172), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 38/233 (16%), Positives = 76/233 (32%), Gaps = 18/233 (7%)

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
              G+        ++ +      + G  +      A   +  GCD  C FC      G  
Sbjct: 146 VLPGEAPGALPAPLDLEQIPSPYLSGQLDPTVPGGALWQLSRGCDFACAFCYDHKGNGGV 205

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
              +L ++  E R      V ++ +L    N               ++L  + ++   V 
Sbjct: 206 RRFALKRIEAELRLFARLQVPQVFVLDSTFNKV--------PQRAKEILRLIRKLAPGVH 257

Query: 263 LRYTTSHPRDMSDCLIKA-HGDL-DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
             +      ++    I A   +L   +   L + +QS    +L+ + R     ++     
Sbjct: 258 FHF------EVRSEFIDAEMAELFASITCSLQIGLQSADPAVLRGVGRGFDRDDFVMRAS 311

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
            +   R       D I G PG++   FR+++D    +       F  +   GT
Sbjct: 312 LL--NRTGAIFGFDLIYGLPGDSLKLFRSSLDFALSLYPNHLDIFPLAVLPGT 362


>gi|153938546|ref|YP_001391931.1| putative B12-binding Fe-S oxidoreductase [Clostridium botulinum F
           str. Langeland]
 gi|152934442|gb|ABS39940.1| putative B12-binding Fe-S oxidoreductase [Clostridium botulinum F
           str. Langeland]
 gi|295319951|gb|ADG00329.1| putative B12-binding Fe-S oxidoreductase [Clostridium botulinum F
           str. 230613]
          Length = 558

 Score = 70.7 bits (172), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 49/308 (15%), Positives = 104/308 (33%), Gaps = 34/308 (11%)

Query: 60  DDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILR 119
           + ADL+   +C+I           L  +  L N          +V  G     + E  LR
Sbjct: 54  EKADLVAF-SCYIWN---------LEYVEELVNLIKLVKPSTEIVFGGPEVSYDSESFLR 103

Query: 120 RSPIVNVVVGPQTYYRLPELLERARFG----------KRVVDTDYSVEDKFERLSIVDGG 169
           + P   V+ G         +  +              K +   +Y+ E     +  V   
Sbjct: 104 KVPGEYVIEGEGEETFREFIKCKIENKSLDMVKGLYIKTLNGIEYTGERHNISMDSVVFP 163

Query: 170 YNRKRGV---TAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEIT 226
           Y  +  +     +     GC   C +C+     G      + +V  E + L+D  V  I 
Sbjct: 164 YKEEEDLKNKIVYYEASRGCPFKCKYCLSSTLHG-VRFHDIERVKKEIKFLVDKNVKLIK 222

Query: 227 LLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV 286
            + +  N      +   K   +    +           +       ++   ++       
Sbjct: 223 FVDRTFNCNHKFAMGIWKYILNLDTDA---------TFHFEISADLLTKEELEILSKGKE 273

Query: 287 LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDD 346
                 + VQ+ ++ +LK++NR       ++ ++ +++++ +I    D I G PGE  + 
Sbjct: 274 GRIQFEVGVQTTNNEVLKNINRHVNFETIKEKVEELKNLK-NIKQHLDLIAGLPGEDYNS 332

Query: 347 FRATMDLV 354
           F+ + + V
Sbjct: 333 FKNSFNDV 340


>gi|255011282|ref|ZP_05283408.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Bacteroides fragilis 3_1_12]
 gi|313149093|ref|ZP_07811286.1| coproporphyrinogen III oxidase [Bacteroides fragilis 3_1_12]
 gi|313137860|gb|EFR55220.1| coproporphyrinogen III oxidase [Bacteroides fragilis 3_1_12]
          Length = 377

 Score = 70.7 bits (172), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 42/233 (18%), Positives = 81/233 (34%), Gaps = 20/233 (8%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR---GKGLDG 242
           C   C +C          S      ++   K ++  +    L G+ +       G     
Sbjct: 11  CKTRCIYC---DFYSTTRSERKGHYIEALCKELE--MRYTYLKGEPIETLYFGGGTPSQL 65

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPR--DMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300
           ++  F  +  ++  + G+      T      D+    ++    L      + + +Q+  D
Sbjct: 66  DEEDFRKVFDTVRRVYGMENCHEITLEANPDDLCPEYVQMLSRLP--FNRISMGIQTFDD 123

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIA-ISSDFIVGFPGETDDDFRATMDLVDKIGY 359
             L  + RRH A +  + ++  R+       IS D I G PGET + +   +     +  
Sbjct: 124 ATLTLLKRRHNATQAIRAVELCRTY--GFRNISIDLIYGLPGETAERWERDLQQAVALDV 181

Query: 360 AQAFSFKYSPRLGTPGSNML-----EQVDENVKAERLLCLQKKLREQQVSFND 407
               ++      GTP   ML     E+VDE+        L  +L+E      +
Sbjct: 182 EHVSAYHLIYEEGTPIYRMLQKHQVEEVDEDSSVRFFTLLMDRLQEAGYEHYE 234


>gi|160885179|ref|ZP_02066182.1| hypothetical protein BACOVA_03177 [Bacteroides ovatus ATCC 8483]
 gi|156109529|gb|EDO11274.1| hypothetical protein BACOVA_03177 [Bacteroides ovatus ATCC 8483]
          Length = 335

 Score = 70.7 bits (172), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 47/196 (23%), Positives = 76/196 (38%), Gaps = 13/196 (6%)

Query: 222 VCEITLLGQNVNAWR---GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPR--DMSDC 276
           + +  L G+++       G     EK  F  +  ++ E  GL   +  T      D+S  
Sbjct: 1   MRKEYLKGEDIETIYFGGGTPSQLEKEDFEQIFDTIREHYGLNHCQEITLEANPDDLSQE 60

Query: 277 LIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFI 336
            ++    L      L + +Q+  D  LK + RRH A    + IDR R       IS D I
Sbjct: 61  YLEMLSSLP--FNRLSMGIQTFDDATLKLLRRRHNARTAIEAIDRCRKADFQ-NISIDLI 117

Query: 337 VGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ-----VDENVKAERL 391
            G PGET + +   +     +      ++       TP  NML+Q     VDE+   E  
Sbjct: 118 YGLPGETKERWENDLRQAISLNVEHISAYHLIYEEDTPIYNMLKQHQISEVDEDSSLEFF 177

Query: 392 LCLQKKLREQQVSFND 407
             L + L++      +
Sbjct: 178 TLLIEHLQKAGFEHYE 193


>gi|78222909|ref|YP_384656.1| cobalamin B12-binding/radical SAM family protein [Geobacter
           metallireducens GS-15]
 gi|78194164|gb|ABB31931.1| Cobalamin B12-binding/Radical SAM [Geobacter metallireducens GS-15]
          Length = 434

 Score = 70.7 bits (172), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 52/334 (15%), Positives = 102/334 (30%), Gaps = 39/334 (11%)

Query: 53  YERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQA 112
           +E V   +  DL+      I     +        +R  + +       + VV+ G     
Sbjct: 50  HEDVPFGEKFDLV-----GITAMTHQ-------AVRAYEIADRFRAQGVPVVLGGIHPTV 97

Query: 113 EGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYN- 171
             EE        + V+  +      +LL+    G R+     +     +RL I     + 
Sbjct: 98  LPEEAQA---HADAVLIGEAEPVWAKLLDDFLAG-RLAPLYRAPIPTDDRLVIPWSRRDI 153

Query: 172 ---RKRGVTAFLTIQEGCDKFCTFC-VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITL 227
              R+   T  +    GC   C FC V PY       R+   V+ E R         +  
Sbjct: 154 LAGRQYLTTQTVQASRGCPYDCPFCTVTPYFGRTFRYRNPDDVLAELRSF---EGKLMVF 210

Query: 228 LGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL 287
           +  N+           K     +        G   LR+           L+K       +
Sbjct: 211 VDDNILG----DPVRAKPILEGMAGMNLRWGGQANLRFA------EDPELVKLVARSGCI 260

Query: 288 MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDF 347
              + + ++S +     +  +         ++ R+R     I + +  I GF    +  F
Sbjct: 261 --GIFVGIESVTGPH-ANHAKTGNGSSQIDLVKRVRDA--GIVLEASMIFGFDDHDEGIF 315

Query: 348 RATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
             T+  +++   +       +P  GT      ++
Sbjct: 316 ERTVRFLEECAPSIPTFNVLTPYPGTSLFKQFDR 349


>gi|242278004|ref|YP_002990133.1| radical SAM domain protein [Desulfovibrio salexigens DSM 2638]
 gi|242120898|gb|ACS78594.1| Radical SAM domain protein [Desulfovibrio salexigens DSM 2638]
          Length = 464

 Score = 70.7 bits (172), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 57/363 (15%), Positives = 112/363 (30%), Gaps = 51/363 (14%)

Query: 43  RMEDMFFSQGYERVN--------------------SMDDADLIVLNTCHIREKAAEKVYS 82
            +       G+E +                       D A + + N  ++ +        
Sbjct: 25  VIAGALHDAGHEVIQYDMLAAGNSLDLLRAALAEAKPDYAGISIRNVDNV-DSFTSHTNK 83

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
           F+ + +N+ +   +      V+  G       EEIL  +     +VG     ++ EL+ +
Sbjct: 84  FIQKAKNIVDVLKEAKIP--VIAGGAGFSLLPEEILDFTGADYGIVGEGER-KMVELIAQ 140

Query: 143 ARFGKRVVDT------DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
              GK+              E +          Y  K      +  + GC+  C++C  P
Sbjct: 141 LEQGKKTRHIYGKEKGIPGHEIQVPHWDPQLLRYYLKESGVINVQTKRGCEHCCSYCTYP 200

Query: 197 YTRG-IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
           +  G     R ++++ DE   L + G   I       N   G                + 
Sbjct: 201 HLEGHKMRVRPVNEIADELEMLCNCGADNIFFTDSVFNDRAGHY-------LQMAEEIIR 253

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
               +    +    P +  +  +         +  + +   + SD  LK + +  T  E 
Sbjct: 254 REIKISWCGFFQPGPIEQDE--LALLKRSG--LQAMEVGTDAASDTTLKGLRKSFTFDEV 309

Query: 316 RQIIDRI-RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR---L 371
            +  ++  +   P        I G P ET D  R  +D ++ +       F +S      
Sbjct: 310 MEFNEKCVQQHIPCAHF---VIFGGPDETMDTVREGIDNINSLR--NCVVFPFSGIRLHE 364

Query: 372 GTP 374
           GTP
Sbjct: 365 GTP 367


>gi|218780059|ref|YP_002431377.1| radical SAM domain protein [Desulfatibacillum alkenivorans AK-01]
 gi|218761443|gb|ACL03909.1| Radical SAM domain protein [Desulfatibacillum alkenivorans AK-01]
          Length = 477

 Score = 70.7 bits (172), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 37/204 (18%), Positives = 64/204 (31%), Gaps = 13/204 (6%)

Query: 175 GVTAFLTIQEGCDKFCTFCVVPYTRGI-EISRSLSQVVDEARKLIDNGVCEITLLGQNVN 233
              A ++   GC   C FC      G     RS   +V E R+  ++        G    
Sbjct: 204 RPMATISANRGCCHRCVFCPAHKVSGAGVRLRSPESIVREIRECREHW-------GIQDF 256

Query: 234 AWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHL 293
             RG+     +    DL   L +    VR     +    M   L        +    + +
Sbjct: 257 FMRGETFTASRAWLKDLCRELKKQAPGVR-WLCNARADAMDLELAGLMKSAGLC--GVSM 313

Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
             +S +   L  + +     + R+ ++  RS    I     F++GF  ET +D    ++ 
Sbjct: 314 GAESPNADTLALIKKDLCFEDVRKAVNACRS--HGIMTMVYFLMGFLWETREDIIRNIEK 371

Query: 354 VDKIGYAQAFSFKYSPRLGTPGSN 377
              +       F   P  G     
Sbjct: 372 AGTLKSDVTEFFFPYPLPGAELYE 395


>gi|269926270|ref|YP_003322893.1| Radical SAM domain protein [Thermobaculum terrenum ATCC BAA-798]
 gi|269789930|gb|ACZ42071.1| Radical SAM domain protein [Thermobaculum terrenum ATCC BAA-798]
          Length = 472

 Score = 70.7 bits (172), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 37/194 (19%), Positives = 68/194 (35%), Gaps = 13/194 (6%)

Query: 179 FLTIQEGCDKFCTFCVVPYTR-GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG 237
           ++    GC   CT C +P    G         VV++ R+ ++ G   IT    +      
Sbjct: 180 YVEATRGCLHTCTHCPIPPVYGGRFFVVPKDVVVEDIRQQVNAGATHITFGDPD------ 233

Query: 238 KGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQS 297
             L+G       L     E   L                L     +L  +  ++   V+S
Sbjct: 234 -FLNGPGHVLKILRAVHEEFPFLTFDATIKIEHIIEKRDLFTELRELGCI--FVVSAVES 290

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
            ++ +L+++ + HT  +  + +  +R    DI ++   +   P ET D F   +  V+  
Sbjct: 291 VNEDVLRNLEKGHTRQDVEEALSILRQN--DIEMNPSLLPFTPWETLDSFIELLHFVEDH 348

Query: 358 GY-AQAFSFKYSPR 370
                     YS R
Sbjct: 349 DLIPNVSPVHYSIR 362


>gi|57864896|gb|AAW57070.1| conserved hypothetical protein [cyanobacterium endosymbiont of
           Rhopalodia gibba]
          Length = 522

 Score = 70.7 bits (172), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 52/309 (16%), Positives = 100/309 (32%), Gaps = 30/309 (9%)

Query: 72  IREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSP---IVNVVV 128
           +      +++  +G IR       +   +  +VV G       E++    P   IV+V  
Sbjct: 111 VTIAYYSEIWRNIGLIRRGLKRAKEYHPEARLVVGGGAISVFYEQLKSDLPKGTIVSVGE 170

Query: 129 GP-----------QTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNR----- 172
           G             +  R   + E A   K + +    +E        +   +       
Sbjct: 171 GETLLQKLLQGKDFSDERCYVVGENALREKLIHEPPTPIEKTACNYKYIQSIWPEFDYYF 230

Query: 173 -KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR-SLSQVVDEARKLIDNGVCEITLLGQ 230
            +      +  + GC   C +CV     G ++      +VV E R+L D G+        
Sbjct: 231 QENDFYIGVQTKRGCPHNCCYCVYTVVEGKQVRINPADEVVKEMRQLYDRGIRNFWFTD- 289

Query: 231 NVNAWRGKGLDGEKCTFSDLLYSL-SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMP 289
              A         K T   L   L SE+  +    Y  +   +++  L          M 
Sbjct: 290 ---AQFIPARKFIKNTEELLQKILDSEMTDIHWAAYIRAD--NLTPNLCDLMAKTG--MN 342

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           Y  + + SGS  +++ M   +      Q    ++    +  +S ++      ET D  R 
Sbjct: 343 YFEIGITSGSQELVRKMRMGYKLRTVLQNCRDLKRAGFNDMVSVNYSFNVINETFDTIRQ 402

Query: 350 TMDLVDKIG 358
           T+    ++ 
Sbjct: 403 TIAYHRELE 411


>gi|312793952|ref|YP_004026875.1| Radical SAM domain-containing protein [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312181092|gb|ADQ41262.1| Radical SAM domain protein [Caldicellulosiruptor kristjanssonii
           177R1B]
          Length = 535

 Score = 70.4 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 46/289 (15%), Positives = 101/289 (34%), Gaps = 20/289 (6%)

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135
           A          +  L     K   D+ +++ G        + L     V++++  +  Y 
Sbjct: 58  AISTYIWNRSYVEKLVEGLKKARKDIKIILGGP---EVYFDSLEEWKFVDLIIRGEGEYP 114

Query: 136 LPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
             +L E    GK+ +  +Y   D   +L       +       +     GC   C++C+ 
Sbjct: 115 FLDLCEHIATGKQYIQKEYPPFD-LSKLPFAYKDESLDTSRIYYYESSRGCPFRCSYCLS 173

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
              +G      L +V +E   L    V  I  + +  NA + + +          +    
Sbjct: 174 SIEKG-VRFAPLEKVFEELDYLFKKEVRLIKFVDRTFNANKERAIK---------IIEFC 223

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
           + K      +    P  + D  I A    +  +  L + +QS + + L +++R +     
Sbjct: 224 KQKSQSTQVHFEIDPTLLDDDFIDAINTSEDNLFRLEIGLQSFNQQTLDAIDRFYDIDRI 283

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD-----LVDKIGY 359
            + + ++   +  I +  D I G P E    F+ +++       D++  
Sbjct: 284 DKNLKKLMENKKAI-VHLDLIAGLPYEDFLSFKRSLNKTILYFADEVQL 331


>gi|23016844|ref|ZP_00056596.1| COG1032: Fe-S oxidoreductase [Magnetospirillum magnetotacticum
           MS-1]
          Length = 439

 Score = 70.4 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 33/177 (18%), Positives = 64/177 (36%), Gaps = 13/177 (7%)

Query: 179 FLTIQEGCDKFCTFCVVPYTRGIEIS-RSLSQVVDEARKLIDN-GVCEITLLGQNVNAWR 236
            + I  GC   CTFC  P       S R++  V+ E +  I + G     L        +
Sbjct: 244 PMMISRGCPFQCTFCSNPRMWTTRYSLRAVDDVIAEMKHYIAHYGATAFQLYDLTAIVKK 303

Query: 237 GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQ 296
              +D            + E   +     + +    + + ++           YL    +
Sbjct: 304 DWAVD-------LCQRMIDEGIAVKWSLPSGTRSEALDEEVLTLLRQTG--CNYLVYAPE 354

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
           SGS R L+ + ++ +  +  +    + + +  + I  + I+GFP ET  D   T+  
Sbjct: 355 SGSPRTLERIKKKISLDKLTE--SALIAKKVGLVIRCNLIIGFPHETRRDVFDTVRY 409


>gi|210623513|ref|ZP_03293858.1| hypothetical protein CLOHIR_01808 [Clostridium hiranonis DSM 13275]
 gi|210153571|gb|EEA84577.1| hypothetical protein CLOHIR_01808 [Clostridium hiranonis DSM 13275]
          Length = 589

 Score = 70.4 bits (171), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 56/315 (17%), Positives = 113/315 (35%), Gaps = 35/315 (11%)

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVV----------------GP 130
           I +L  +  K   +L++ + G     + E +++    ++ ++                G 
Sbjct: 75  IMSLCENLKKVMPNLIIGLGGPEVSYDSENLMKEHKFIDYILYGEGEVTFRDVCLMLNGK 134

Query: 131 QTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTI-----QEG 185
                +  L+ R   G++VV  +       + L ++   Y+          I       G
Sbjct: 135 MNAADIKGLVWR--DGEKVVVNEE--RPYLQDLDLIPSPYDNMDPKEYENRIVYYESSRG 190

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C   C +C+    +G     SL +V  + + LID  V +I  + +  NA        +K 
Sbjct: 191 CPFNCQYCLSSAIKG-LRYFSLDRVKKDLKNLIDARVAQIKFIDRTFNA--------KKK 241

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
           T  D++  L E        +       + D +++   D    +    + VQS    +L++
Sbjct: 242 TAMDIMKFLMENDNGFTTYHFEVTAHLIDDEMLEFLKDCKPGLFQFEIGVQSTDQNVLEA 301

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
             R+    +  +++ +I S + +I    D I G P E    F  + + V  +   Q    
Sbjct: 302 CGRKDDFVKLSKVVKQIESYK-NIHQHLDLIAGLPYEGYKGFEKSFNDVYNLEIEQLQLG 360

Query: 366 KYSPRLGTPGSNMLE 380
                 GT    M +
Sbjct: 361 FLKMIKGTGIRKMAD 375


>gi|320006771|gb|ADW01621.1| Radical SAM domain protein [Streptomyces flavogriseus ATCC 33331]
          Length = 482

 Score = 70.4 bits (171), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 35/184 (19%), Positives = 71/184 (38%), Gaps = 13/184 (7%)

Query: 174 RGVTAFLTIQEGCDKFCTFCVVPYTRG-IEISRSLSQVVDEARKLID-NGVCEITLLGQN 231
           RG +  L    GC   C +C   +  G  +   S  +V++E R+L++ +G   I +   +
Sbjct: 197 RGRSGNLVTSRGCSYACAYCYSKHQWGVGQRRHSADRVIEEIRELVEVHGFDRIRIEDDD 256

Query: 232 VNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL 291
                      +     +L  S+ +     +  +      D+ D  +      D     L
Sbjct: 257 FVE--------DVPRMQELCRSIEKSGLQGKFEWEAKARPDLIDDDMARMLR-DSGCFRL 307

Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351
            + V++    +LK + R        + +  +      I + +  I+G PGETD+  R+T+
Sbjct: 308 LVGVETLDWSLLKRLGRPVKVDVTERALSSLSKA--GIGVQATLILGIPGETDEAMRSTI 365

Query: 352 DLVD 355
             + 
Sbjct: 366 TWLQ 369


>gi|158522418|ref|YP_001530288.1| radical SAM domain-containing protein [Desulfococcus oleovorans
           Hxd3]
 gi|158511244|gb|ABW68211.1| Radical SAM domain protein [Desulfococcus oleovorans Hxd3]
          Length = 471

 Score = 70.4 bits (171), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 46/241 (19%), Positives = 82/241 (34%), Gaps = 24/241 (9%)

Query: 152 TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI-EISRSLSQV 210
            D     K + +  +       R   A L    GC   C +C      G      S  ++
Sbjct: 181 IDLPAYWKRQSMPPIP------RRRYASLFSSRGCPYKCAYC--HRIFGDTFRGHSADRI 232

Query: 211 VDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSH 269
           VDE   L    G+ +   L    N         ++         +       RL +    
Sbjct: 233 VDEIAFLSKTYGISDFEFLDDIFN--------LDRKRLMTFCDLIHSRNLKTRLVFPNGV 284

Query: 270 PRD-MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
             D  +   I+A  D    M +    +++GS RI   + +     ++ + ++   +VR  
Sbjct: 285 RTDIFTAEEIEALADAG--MYFASFALETGSPRIQGLVRKNLNIGKFLKNVEI--AVRCG 340

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM-LEQVDENVK 387
           +  +   ++GFP ET+ + + T+D+           F  +P   T    M   Q  E V 
Sbjct: 341 VYANGFAMMGFPTETEAEMQMTIDVACGSRLHTISFFTVTPFPNTELYEMARRQCPEKVA 400

Query: 388 A 388
           A
Sbjct: 401 A 401


>gi|154484063|ref|ZP_02026511.1| hypothetical protein EUBVEN_01772 [Eubacterium ventriosum ATCC
           27560]
 gi|149735105|gb|EDM50991.1| hypothetical protein EUBVEN_01772 [Eubacterium ventriosum ATCC
           27560]
          Length = 599

 Score = 70.4 bits (171), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 51/319 (15%), Positives = 111/319 (34%), Gaps = 52/319 (16%)

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +G ++ +     K   ++ V V G       E++LR +  ++ V+  +      E++++ 
Sbjct: 71  IGMVKEIVRDYKKICPNVDVWVGGPEVSYNVEQVLRENEAIDYVMYGEGELTFKEVMDKY 130

Query: 144 RFG-----------------------------------------KRVVDTDYSVEDKFER 162
            F                                          + +++      D  + 
Sbjct: 131 TFNGIGIDELNDILGIGYRKSKSLEHQIFESETGILDCSKKQRIQIIINKPQQPVDMSDI 190

Query: 163 LSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGV 222
             +     + +  +  + T   GC   C++C+          RSL  V  E +  IDN  
Sbjct: 191 PFVYKEMKDFENKIIYYET-SRGCPFSCSYCL-SSIDKRLRFRSLDLVKKELQFFIDNNT 248

Query: 223 CEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHG 282
            ++  + +  N          K    ++   + +    V   +       M+D  I    
Sbjct: 249 NQVKFVDRTFNC--------NKKHAMEIWSYIKKHDNGVTNFHFEIAADLMTDEEIALIS 300

Query: 283 DLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGE 342
           D+   +  L + VQS +++ L+++NR+    +  +I ++I     +I    D I G P E
Sbjct: 301 DMRPGLIQLEIGVQSTNEKTLEAINRKTDIEKIAEITEKIH-HGGNIHQHLDLIAGLPYE 359

Query: 343 TDDDFRATMDLVDKIGYAQ 361
             + F+ + D V  +   Q
Sbjct: 360 NYESFKRSFDQVYAMKPDQ 378


>gi|253699495|ref|YP_003020684.1| radical SAM protein [Geobacter sp. M21]
 gi|251774345|gb|ACT16926.1| Radical SAM domain protein [Geobacter sp. M21]
          Length = 557

 Score = 70.4 bits (171), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 45/291 (15%), Positives = 103/291 (35%), Gaps = 27/291 (9%)

Query: 99  GDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG------------ 146
               +V+ G        E++ R+  ++ +V  +      ELL+    G            
Sbjct: 84  PGTFIVLGGPEVSYGSFEMMGRNGAIDCIVRGEGEETCRELLQALSGGLPLDDIPGITYR 143

Query: 147 ---KRVVDTDYSVEDKFERLS-IVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
              + V + +     K + +      G         +     GC   C FC+     G  
Sbjct: 144 DHDEVVANPERGAIAKLDSVPSPFAAGLVDLEKPLVYYETSRGCPFSCAFCMSSLENG-V 202

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            S S+ ++  + R+L+DNGV  + L  +  N       D ++      ++ L   +    
Sbjct: 203 RSFSMERIEADLRQLMDNGVQTVKLADRTFN------FDAQRAN---AIWRLILSENRSS 253

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
             +       +++  +    ++        + +QSG ++ L  + R+ +  +  Q +  +
Sbjct: 254 KFHFEIAAELLTEENLALLAEVPAGTFRFEIGIQSGGEKTLAKVQRKSSLDKLYQNVRAV 313

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
                 + +  D + G PGE+ + F  ++ ++ ++G             GT
Sbjct: 314 IEKT-KVTVHLDLVAGLPGESLEGFLTSLQVLFELGGNHIQVEPLKVLKGT 363


>gi|322420962|ref|YP_004200185.1| cobalamin B12-binding domain-containing protein [Geobacter sp. M18]
 gi|320127349|gb|ADW14909.1| cobalamin B12-binding domain protein [Geobacter sp. M18]
          Length = 557

 Score = 70.4 bits (171), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 52/331 (15%), Positives = 108/331 (32%), Gaps = 37/331 (11%)

Query: 59  MDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEIL 118
            ++AD+++  +C+I           L    +LK    K    + +V+ G        +++
Sbjct: 54  AEEADVVLF-SCYIWN-----TELTLKLASDLK----KLYPGVFIVLGGPEVSFGSFDLM 103

Query: 119 RRSPIVNVVVGPQTYYRLPELLERARFG---KRVVDTDYSVEDK----FERLSIVDGGYN 171
            R+  ++ +V  +      ELL     G     +    Y   ++     ER +I D    
Sbjct: 104 ARNGAIDCIVRGEGEETCQELLNALNCGLPLDEIAGITYREREEVIANPERAAIADLDEI 163

Query: 172 RKRGVTAFL---------TIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGV 222
                 A +             GC   C FC +        S S+ ++  +   L+  G 
Sbjct: 164 PSPFAAALVDLAKPLVYYETSRGCPFSCAFC-MSSIESGVRSFSMERIKRDLLLLMQAGA 222

Query: 223 CEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHG 282
             + L  +  N         E   F       S+        +       +++  +    
Sbjct: 223 QTVKLADRTFN--YDAKRADEIWRFILEHNRGSK-------FHFEIAAELLTEENLAQLS 273

Query: 283 DLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGE 342
            +   +    + VQSG    L  + R  +       ++R++S    + +  D + G PGE
Sbjct: 274 QVPAGVFRFEIGVQSGGQETLAKVERNSSLSRLYHNVERLKSAT-GVTVHLDLVAGLPGE 332

Query: 343 TDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
           + + F  ++  +  +              GT
Sbjct: 333 SLEGFLDSVQGLFALNADHIQVEPLKVLKGT 363


>gi|218781947|ref|YP_002433265.1| radical SAM domain protein [Desulfatibacillum alkenivorans AK-01]
 gi|218763331|gb|ACL05797.1| Radical SAM domain protein [Desulfatibacillum alkenivorans AK-01]
          Length = 829

 Score = 70.4 bits (171), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 52/263 (19%), Positives = 99/263 (37%), Gaps = 24/263 (9%)

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           KR +  D +    F    IV         +   L I  GC + C FC           R+
Sbjct: 228 KRTIIPDLNAT-HFPIDPIVPYSNPVHDRLR--LEISRGCGRGCRFCQAGMIYRPVRERT 284

Query: 207 LSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
              +++ ARK +   G  +I+LL  +V  +            S ++   S+ +  V L  
Sbjct: 285 PENLMEYARKSLTQTGYEDISLLSLSVGDYSCLD-----WLMSGIMKEFSKQQVAVSLP- 338

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
            +     ++  L++    +        +  ++G+ R+   +N+  +  E  Q +     +
Sbjct: 339 -SMRAGTLTRPLMEEIKKVRK--TGFTIAPEAGTQRLRDVINKNISEEEIIQTVSDAFYM 395

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA--------QAFSFKYSPRLGTPGSN 377
              + I   F++G P ET +D +  +DLV K+            A    + P+  TP   
Sbjct: 396 GWKL-IKLYFMIGLPTETQEDVQGIVDLVHKLK-DLAGKKADITASIGVFVPKPHTP-FQ 452

Query: 378 MLEQVDENVKAERLLCLQKKLRE 400
              Q+      ERL  ++ +L+ 
Sbjct: 453 WARQISIEEAWERLDYIKDRLKR 475


>gi|220928407|ref|YP_002505316.1| AMP-dependent synthetase and ligase [Clostridium cellulolyticum
           H10]
 gi|219998735|gb|ACL75336.1| AMP-dependent synthetase and ligase [Clostridium cellulolyticum
           H10]
          Length = 2142

 Score = 70.4 bits (171), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 39/248 (15%), Positives = 85/248 (34%), Gaps = 18/248 (7%)

Query: 125 NVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAF----- 179
           ++       +   E ++    G R    ++      +R  I    Y  K G+ +      
Sbjct: 578 DITFTSMQGFEANEDIQIVLTGARGHIKEFDALPIPDRSLIDLTKYKGKIGMASINNCIS 637

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
           +    GC   C +C         + RS   + DE      NG+    ++    N      
Sbjct: 638 VQTTRGCPYMCLYCH-KIWSKHHVRRSAQNIYDEIEYYYKNGITNFAVIDDCFNLDMQNS 696

Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
            +  K    + +         +R    T    D     +        +    +L +++ S
Sbjct: 697 SEVFKLIIKNKIKIQIFFPNGLRGDILTPDYID-----LMVEAGTRGI----NLSLETAS 747

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
            R+ K + +     +++Q+++ I    P++ +    + GFP ET+++   T++ +  I  
Sbjct: 748 PRLQKLLMKNLDLNKFKQVVNYIAQKHPEVILEMATMHGFPTETEEEAMMTLNFIKDIK- 806

Query: 360 AQAFSFKY 367
                F Y
Sbjct: 807 --WLHFPY 812


>gi|302038569|ref|YP_003798891.1| hypothetical protein NIDE3276 [Candidatus Nitrospira defluvii]
 gi|300606633|emb|CBK42966.1| conserved protein of unknown function, putative radical SAM
           [Candidatus Nitrospira defluvii]
          Length = 593

 Score = 70.4 bits (171), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 46/239 (19%), Positives = 89/239 (37%), Gaps = 21/239 (8%)

Query: 122 PIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNR----KRGVT 177
            +VN + G + + ++P L+ R + GK  V+  +  E+  +  +    G+           
Sbjct: 259 ELVNQMDGKRDFSKVPNLIYR-QNGKITVNQPFYSENINQLTAPNYDGFPLDLYLSPEPV 317

Query: 178 AFLTIQEGCDKF-CTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAW 235
             +    GC    C FC +         R   + VD+   L +  G        +     
Sbjct: 318 LPVQFSRGCYYKDCAFCALTLDHQNFRQRDPGKTVDDLVWLKERYGAQSFFFTDECFA-- 375

Query: 236 RGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPV 295
               L   K     ++     +K    LR+     +++S  L+    D       +   +
Sbjct: 376 ----LSPTKRLCQQMIERQVNVKWTCELRF----EKNLSRELLTQMRDAG--CLKIVFGL 425

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           +S + R++  M +       R+I+D    +   IA+    IVGFP E +++   TM+ V
Sbjct: 426 ESFNQRVMDFMKKGIKQEWVRRIVDDCVDL--GIAVHCYVIVGFPTEKEEEALDTMNFV 482


>gi|283785775|ref|YP_003365640.1| hypothetical protein ROD_20881 [Citrobacter rodentium ICC168]
 gi|282949229|emb|CBG88839.1| conserved hypothetical protein [Citrobacter rodentium ICC168]
          Length = 448

 Score = 70.4 bits (171), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 44/292 (15%), Positives = 96/292 (32%), Gaps = 25/292 (8%)

Query: 88  RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147
           R  + +       + VV+ G       +E  R     + +V  +      E+++  R   
Sbjct: 72  RAYQIASEYRRRGVPVVMGGFHVTLVPDEAAR---FADTIVTGEAESVWAEVIDDLRHHT 128

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR-GIEISRS 206
                +    D  +          ++      +    GC   C FC V          R 
Sbjct: 129 LKPRYEGQQTDLRQVSVDRSLFQGKRYLPIGLIETGRGCRFPCEFCAVQTFYQRRYRRRD 188

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE--IKGLVRLR 264
           +  V+ E    +         +  N          G      ++L +L++  ++ + ++ 
Sbjct: 189 IDSVLGEL-NSLKAHKKLFFFVDDNFA--------GSLRESREVLPALAQANVRWVTQMS 239

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE--YRQIIDRI 322
              +H       L +A          + +  +S ++  L  MN+R    +  + + +  +
Sbjct: 240 INAAHDEGFVQELARA------GCRGVLIGFESLNEENLLLMNKRVNTMKGGFSRALANL 293

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
           R  R  IA+   F+ G+  +T + F   ++   +     A     +P  GTP
Sbjct: 294 R--RHGIAVYGTFVFGYDHDTLESFGEAVEFAREQSMYIAAFNHMTPFPGTP 343


>gi|283798879|ref|ZP_06348032.1| radical SAM domain protein [Clostridium sp. M62/1]
 gi|291073336|gb|EFE10700.1| radical SAM domain protein [Clostridium sp. M62/1]
          Length = 399

 Score = 70.4 bits (171), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 45/297 (15%), Positives = 93/297 (31%), Gaps = 48/297 (16%)

Query: 110 AQAEGEEILRRSPI-----VNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLS 164
           A    EE+           V  V G     R  ELL R   G+R+ + ++S         
Sbjct: 13  AGIFPEELFSDRSEREGGDVRFVPGGDRERRCLELLSRLARGERLTEEEFSEILSVRTWK 72

Query: 165 IVDGGYNRKRGVTA-----------FLTIQEGCDKFCTFCVVPYTRGIEISR---SLSQV 210
                +   R +              +     C   C +C +  +   E+SR   +  ++
Sbjct: 73  TAGLLFRTARRIREKYYGKRVFIRGLIEFTNYCRNDCYYCGIRRSN-QEVSRYRLTPDEI 131

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270
           +    +    G     L G       G+ L+ E         +L+++   ++ R+     
Sbjct: 132 LSCCEEGRRLGFRTFVLQG-------GEDLNFEGREGLRGDRALAKVVEEIKRRFPDCAV 184

Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII----------D 320
                  +        +        Q+G+DR L   +       YR++           +
Sbjct: 185 T------LSVGERDREVYEQW---FQAGADRYL-LRHETADEEHYRRLHPTELSGQRRKE 234

Query: 321 RIRSVRP-DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
            +R+++       +  +VG PG+T       +  + ++         + P   TP +
Sbjct: 235 CLRALKDIGFQTGAGMMVGSPGQTVRHLAEDLVFLRELQPEMVGIGPFLPHHATPFA 291


>gi|222053182|ref|YP_002535544.1| radical SAM protein [Geobacter sp. FRC-32]
 gi|221562471|gb|ACM18443.1| Radical SAM domain protein [Geobacter sp. FRC-32]
          Length = 488

 Score = 70.4 bits (171), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 54/373 (14%), Positives = 115/373 (30%), Gaps = 46/373 (12%)

Query: 40  DSLRMEDMFFSQGY-ERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEG 98
           D+   + M    GY E    +  +   V+ T  I         S +           +  
Sbjct: 45  DAEIYDAMTKDHGYPEIEQRLQASTFDVVATTAIT--------STINDALKTLQLAKQIN 96

Query: 99  GDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTD----- 153
            + + ++ G       EE+   +  V+ ++  +    L  LL     G  V +       
Sbjct: 97  PNAVSIIGGVHPTFCYEEVFNTTDAVDYIICGEGETTLKALLMALEKGTDVAEVPGVAFK 156

Query: 154 --------------YSVEDKFERLSIVDG----GYNRKRGVTAFLTIQEGCDKFCTFCVV 195
                          +++D      ++D      +         ++   GCD  C FC  
Sbjct: 157 RDGRVIKTAKRCFRENLDDLPAAWDLLDWSDYKYFVIPNSRLGAISTSRGCDHDCIFCSQ 216

Query: 196 PYTRGIE-ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL 254
                     R   +V DE + L +     + L+         K  +  +     ++   
Sbjct: 217 QKFWEQSWRGRDPQKVADEIQYLFEIYGVNVFLIADEYPT---KDRERWEALLDMVIAKD 273

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
             I  L+  R            ++  +    V+  ++++ +++     L  + +     +
Sbjct: 274 LPIYLLMETRVPDIIR---DREILWKYRKAGVV--HIYIGIEATDQETLDFIKKELDVDQ 328

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
            +  +D I      I   + F++GFP ET      T+ L        A     +P     
Sbjct: 329 SKLALDLIHE--HGIITETSFVLGFPDETKKSIEKTLKLAQYYNPDNAHFLAITPWPY-- 384

Query: 375 GSNMLEQVDENVK 387
            ++M   V + +K
Sbjct: 385 -ADMFNDVKDYIK 396


>gi|91201901|emb|CAJ74961.1| similar to Mg-protoporphyrin monomethylester cyclase [Candidatus
           Kuenenia stuttgartiensis]
          Length = 565

 Score = 70.4 bits (171), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 46/255 (18%), Positives = 82/255 (32%), Gaps = 31/255 (12%)

Query: 140 LERARFGKRVVDTDYSVEDKFERLSIV---DGGYNRKRGVTAFLTIQEGCDKFCTFC--- 193
           L       RVV T        ++L      D    +K+G+  ++    GC   C FC   
Sbjct: 202 LASKDKDGRVVFTPRPPIHNLDQLPYPCRQDVTLCQKKGIVTYIQGSRGCYGHCAFCYLN 261

Query: 194 ----VVPYTRGIEISRSLSQVVDEA-RKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS 248
                    RG    RS + + DE  +      +        N       G +       
Sbjct: 262 PFYEQTSLWRG----RSANNIFDEIFKLHTKYSIENFYFSDANFFGPGKYGSERASALAD 317

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
            +L +   I+     R      + +   ++    +       + L ++SG D  LK   +
Sbjct: 318 LILANGLNIRFGFECRVNDIEEKTIEKLVMAGLAN-------VFLGLESGDDNSLKRFKK 370

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY-------AQ 361
             T+ E ++ I  +R+    I  +  FI+  P  T    R   + + + G        A 
Sbjct: 371 HTTSEENKKAIRLLRNY--GIEPTFGFIMFEPHATMQSIRNNFEFLKETGIMTSPAVTAH 428

Query: 362 AFSFKYSPRLGTPGS 376
               + +   GTP  
Sbjct: 429 LLHHRQTVFQGTPAY 443


>gi|51246665|ref|YP_066549.1| hypothetical protein DP2813 [Desulfotalea psychrophila LSv54]
 gi|50877702|emb|CAG37542.1| conserved hypothetical protein [Desulfotalea psychrophila LSv54]
          Length = 847

 Score = 70.4 bits (171), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 47/240 (19%), Positives = 92/240 (38%), Gaps = 24/240 (10%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLI-DNGVCEITLLGQNVNAWRGK 238
           + +  GC + C FC    T      RS  Q+   A++ I D+G  E+ LL  +   +   
Sbjct: 257 IEVARGCTRGCRFCQAGITYRPVRERSPEQIKKLAKEAIQDSGFDELALLSLSTGDYSC- 315

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
            LDG      DL+   SE    V +   +     +S  ++     +        +  ++G
Sbjct: 316 -LDG---LLPDLMNEFSE--KFVSVAMPSMRVGTLSQNIMDQIKRVRK--TGFTMAPEAG 367

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           S+R+ + +N+  T            ++   + +   F++G P ETD+D  A  +L +K+ 
Sbjct: 368 SERLRRVINKGITEEALLDTCKEAFTLGWTL-MKLYFMIGLPTETDEDIEAIGELTNKVR 426

Query: 359 YAQ------------AFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFN 406
             +                 + P+  TP      Q+       ++  L++ L ++   F 
Sbjct: 427 QFRDAGGNSRKSQVNVSVGTFVPKPHTP-FQWAAQLTIEESKRKIQILKEVLPKKGCKFK 485


>gi|167838497|ref|ZP_02465356.1| radical SAM domain/B12 binding domain protein [Burkholderia
           thailandensis MSMB43]
          Length = 647

 Score = 70.4 bits (171), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 61/312 (19%), Positives = 103/312 (33%), Gaps = 54/312 (17%)

Query: 95  IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE------------- 141
            +   DL V++ G  A     +IL R P  +VVV  +    LP +L+             
Sbjct: 98  KRREPDLPVLLGGPHATMLHRQILERFPQFDVVVRYEADEILPAVLDCLERRTFDVIPGL 157

Query: 142 -----------RARFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKF 189
                      R   GK +V + D      ++   I + G +  R     +    GC   
Sbjct: 158 SWRATGRGSLLRFTDGKPKVENLDLLPIASYDHYPIAELGLSMLR-----IEAGRGCPFA 212

Query: 190 CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSD 249
           CTFC        + S  +       R+L                +      D        
Sbjct: 213 CTFCSTAGFF--QRSFRIKSAERLVRELDILHRRYRV-------SDFKLDHDMFTVNRHK 263

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
           ++     + G       ++    + + L+K   D       L+  V++GS R+ K   +R
Sbjct: 264 VMEFCEAVAGRGYRWRASARIDCVDEALLKKMADAG--CVNLYFGVETGSARMQKICQKR 321

Query: 310 HTAYEYRQIIDRIRSVRP--DIAISSDFIVGFPGETDDDFRATMDLVDKIG-----YAQA 362
                  Q ++ I +      I  ++ FI G+P ET  D   T+D++ +         Q 
Sbjct: 322 ----LDLQRVEPILAAADSLGIETTASFITGYPQETGQDRDDTLDMIGRCARRPSCLTQL 377

Query: 363 FSFKYSPRLGTP 374
                 P  GTP
Sbjct: 378 HMLA--PEPGTP 387


>gi|325271210|ref|ZP_08137756.1| hypothetical protein G1E_00411 [Pseudomonas sp. TJI-51]
 gi|324103654|gb|EGC00955.1| hypothetical protein G1E_00411 [Pseudomonas sp. TJI-51]
          Length = 733

 Score = 70.4 bits (171), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 54/359 (15%), Positives = 116/359 (32%), Gaps = 52/359 (14%)

Query: 57  NSMDDADLI-VLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGE 115
              ++A ++ +L++  +     EK    L     ++N  +       V+           
Sbjct: 238 EDPNEAKVVQILDSPAVT---REKSVIRLPSFEKVRNDPVLYAHANRVLHLE-TNPGNAR 293

Query: 116 EILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNR--- 172
            ++++   V+V   P       E            + DY     + R+     G  R   
Sbjct: 294 ALVQKHGDVDVWFNPPPIPMSTE------------EMDYVFGMPYARVPHPAYGKARIPA 341

Query: 173 KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDN--GVCEIT--L 227
              +   + I  GC   CTFC +    G  I +RS   ++ E  ++ D   G   +   L
Sbjct: 342 YEMIRFSVNIMRGCFGGCTFCSITEHEGRIIQNRSHESILHEIEEMRDKVPGFTGVVSDL 401

Query: 228 LGQNVNAWR----------------------GKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            G   N +R                       + L+ +  +  +L      + G+ ++  
Sbjct: 402 GGPTANMYRIACKSHDIEKHCRKPSCVFPGICENLNTDHSSLIELYRKARALPGVKKILI 461

Query: 266 TTSHPRDMSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRR--HTAYEYRQIIDR 321
            +    D++    +   +L    +  YL +  +      L  M +    T   ++++ ++
Sbjct: 462 ASGLRYDLAVESPEYVKELVTHHVGGYLKIAPEHTERGPLDKMMKPGIGTYDRFKRMFEK 521

Query: 322 I-RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
             +    +  +   FI   PG TD+D       +   G+       + P      + M 
Sbjct: 522 FSKEAGKEQYLIPYFIAAHPGTTDEDMMNLALWLKGNGFRADQVQAFYPSPMASATAMY 580


>gi|91974544|ref|YP_567203.1| magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative
           cyclase [Rhodopseudomonas palustris BisB5]
 gi|91681000|gb|ABE37302.1| Magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative
           cyclase [Rhodopseudomonas palustris BisB5]
          Length = 516

 Score = 70.4 bits (171), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 54/298 (18%), Positives = 97/298 (32%), Gaps = 33/298 (11%)

Query: 99  GDLLVVVAGCVAQAEGEEILRRSPIVNVVV---GPQTYYRLPELLERARFGKRVVDTDYS 155
             + +V  G        +I+   P V  +V   G +T  RL   L R      V    Y 
Sbjct: 94  PGVHIVYGGVFPTYHWRDIMADEPYVTAIVRGEGEETALRLMAALARGESLGDVPGIAYR 153

Query: 156 VEDK------------FERLSIVDGGYNRKR-----GVTAFL-TIQEGCDKFCTFCVVPY 197
             D+             +   I     + KR     G+ A +     GC   C++C    
Sbjct: 154 EADETRATKPATVIRDLDAYRIGWELIDHKRYSYWGGLRAVVVQFSRGCPHLCSYCGQRG 213

Query: 198 TRGIEISR-SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256
                  R  +    + AR   + GV  I    +N           +K   + L   ++E
Sbjct: 214 FWTQWRHRDPVLFAKELARLHREQGVKVINFADENPTVS-------KKIWRTFLEALIAE 266

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
              L+ +  T +        ++  +     +     L ++S  ++ L+ + +       R
Sbjct: 267 DVDLILVGSTRADDIVRDADILPLYKKAGWVR--FLLGLESTDEKTLELIRKDAATTTDR 324

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
           + I  +R     I   + ++VGF  ETD D    +  +      Q      +P   TP
Sbjct: 325 EAIRLMRQ--HGILSMATWVVGFEEETDRDHWRGLRQLLSYDPDQIQLLYVTPHRWTP 380


>gi|222529742|ref|YP_002573624.1| radical SAM domain-containing protein [Caldicellulosiruptor bescii
           DSM 6725]
 gi|222456589|gb|ACM60851.1| Radical SAM domain protein [Caldicellulosiruptor bescii DSM 6725]
          Length = 535

 Score = 70.4 bits (171), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 44/289 (15%), Positives = 99/289 (34%), Gaps = 20/289 (6%)

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135
           A          +  L     K    + +++ G        + L     V+ ++  +  Y 
Sbjct: 58  AISTYIWNRSYVEKLVEGLKKAQKSIKIILGGP---EVYFDSLEEWKFVDSIIRGEGEYP 114

Query: 136 LPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
             +L E    G++    +Y   D   +L               +     GC   C++C+ 
Sbjct: 115 FLDLCEHIAVGRQYTQKEYPPFD-LSKLPFAYKDEKLDTSRIYYYESSRGCPFRCSYCLS 173

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
              +G      L +V +E   L    V  I  + +  NA + + +          +    
Sbjct: 174 SIEKG-VRFMPLEKVFEELDYLFKKQVRLIKFVDRTFNANKERAIK---------IIEFC 223

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
           + K      +    P  + + +I A  +    +  L + +QS + + L +++R +   + 
Sbjct: 224 KQKSQTTQIHFEIDPTLLDNDIISAINNSKDDLFRLEIGIQSFNPQTLDAIDRFYDIDKI 283

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD-----LVDKIGY 359
            + + ++   +  I +  D I G P E    F+ ++D       D++  
Sbjct: 284 DKNLKKLMENKKAI-VHLDLIAGLPYEDFLSFKRSLDKTILYFADEVQL 331


>gi|281357646|ref|ZP_06244133.1| Radical SAM domain protein [Victivallis vadensis ATCC BAA-548]
 gi|281315903|gb|EFA99929.1| Radical SAM domain protein [Victivallis vadensis ATCC BAA-548]
          Length = 443

 Score = 70.4 bits (171), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 42/276 (15%), Positives = 91/276 (32%), Gaps = 15/276 (5%)

Query: 93  SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDT 152
             ++      +++ G       E IL  +     V G      +      AR  +     
Sbjct: 93  RFLRTLAAAPMILGGPGYSLYPERILELTGAEYGVAGEGESAVVELAAALARGERPAPGV 152

Query: 153 DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQ--EGCDKFCTFCVVPYTRGIE-ISRSLSQ 209
                ++               G T  + IQ   GC   C +C  P   G E   R L +
Sbjct: 153 YRKKSERQAPPLYSPEIAGFYHGETHIIPIQTKRGCPFRCAYCTYPMLEGHEMRLRDLDE 212

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSH 269
           V+ +  ++       +      V        D  +C    +   +     +    + T  
Sbjct: 213 VLRDIERIRSEWPDAMLYFVDAV------FNDPGRCYVPLVEAMIERRLTVPWTGFVTPA 266

Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329
                D  ++   +  ++   + L V + SD  L  + +  +  E R+   ++  +  ++
Sbjct: 267 RLRDGD--LERMAESGMVA--VDLGVDAASDATLAGLGKAFSFDEVRRCCGKLLEL--NV 320

Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
            +++  + G PGET +     +  + +I  A + +F
Sbjct: 321 GVTTSVMFGGPGETYETVAEGIRNLREIEPAYSIAF 356


>gi|189423541|ref|YP_001950718.1| radical SAM protein [Geobacter lovleyi SZ]
 gi|189419800|gb|ACD94198.1| Radical SAM domain protein [Geobacter lovleyi SZ]
          Length = 828

 Score = 70.4 bits (171), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 44/260 (16%), Positives = 95/260 (36%), Gaps = 22/260 (8%)

Query: 158 DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKL 217
           +  +        + +       + +  GC + C FC   Y       RS  ++ +     
Sbjct: 233 EAADFPDSPIIPFLKTIHDRVAIEVARGCTRGCRFCQAGYIYRPLRERSPQRINELIETS 292

Query: 218 IDN-GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDC 276
           + N G  EI+LL  +   +             +L+   ++  G V +   +     ++  
Sbjct: 293 LKNTGYEEISLLSLSTGDYSCIA-----PLLQELMARHAQ--GRVAVSLPSLRVGTLTPE 345

Query: 277 LIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFI 336
           LI     +        L  ++GS+R+ + +N+  +  +       I +    + I   F+
Sbjct: 346 LIDEIRKVRK--TGFTLAPEAGSERMRRVINKGISEQDLLDGAYNIFAAGWRL-IKLYFM 402

Query: 337 VGFPGETDDDFRATMDLVDKI----------GYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           +G P ET DD +A  +L  ++          G        + P+  TP      Q+    
Sbjct: 403 MGLPTETRDDLQAIPELARQVKNQARRSGGQGEVNVAVSTFVPKPHTP-FQWQRQLSLEE 461

Query: 387 KAERLLCLQKKLREQQVSFN 406
             +R   L+ ++R ++++F 
Sbjct: 462 TRDRQRFLKDEMRRRKLNFK 481


>gi|302038089|ref|YP_003798411.1| hypothetical protein NIDE2781 [Candidatus Nitrospira defluvii]
 gi|300606153|emb|CBK42486.1| conserved protein of unknown function, putative radical SAM
           [Candidatus Nitrospira defluvii]
          Length = 632

 Score = 70.4 bits (171), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 46/254 (18%), Positives = 84/254 (33%), Gaps = 26/254 (10%)

Query: 123 IVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTI 182
           +V+ V   ++   +P  + +   G  V  T ++  +  + L   D              I
Sbjct: 291 LVSAVGAKRSLADVPNTIYKDATGVHVSATSFA--EDMQTLPPPDFDGLPLDKYFVPTKI 348

Query: 183 -----QEGCDK-FCTFCVVPYTRGI-EISRSLSQVVDEARKLIDN-GVCEITLLGQNVNA 234
                  GC    C FC           S+ +  ++ E   L D  G             
Sbjct: 349 LPYLATRGCYWGRCEFCDHGEGYTAGYRSKKIQDILGEITHLRDKYGAKHFHFT------ 402

Query: 235 WRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGD-LDVLMPYLHL 293
                       F  L   L  I   + + +TT    + S    +   D  D    YLH 
Sbjct: 403 ----DESYPPALFRKLTRGL--IDSKMGIAWTTHMRFEKSLLEDQVWQDAKDSGCKYLHF 456

Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
             +SG++R+LK M++  T     + +         I        GFPGET ++  ++++ 
Sbjct: 457 GYESGNERVLKLMDKATTTEIMTKHLKYTAEA--GIWNHCMGFFGFPGETREEAWSSVEF 514

Query: 354 VDKIGYAQAFSFKY 367
           +++       S  +
Sbjct: 515 LEQNK-DHVHSLGF 527


>gi|154498684|ref|ZP_02037062.1| hypothetical protein BACCAP_02675 [Bacteroides capillosus ATCC
           29799]
 gi|150272423|gb|EDM99617.1| hypothetical protein BACCAP_02675 [Bacteroides capillosus ATCC
           29799]
          Length = 612

 Score = 70.4 bits (171), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 47/242 (19%), Positives = 84/242 (34%), Gaps = 34/242 (14%)

Query: 184 EGCDKFCTFCVVPYTRGIEISRSLSQVVDE-ARKLIDNGVCEITLLGQNVNAWRGKGLDG 242
            GC + C FC   Y      SR    +V        D+G  E+TL   + + +R      
Sbjct: 264 RGCIRGCRFCQAGYAYRPVRSRDPELLVKYGIEACKDSGYQEMTLSSLSTSDYR------ 317

Query: 243 EKCTFSDLLYSLSEI--KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300
                  L   L E      V L   +    + S  L+            L    ++G+ 
Sbjct: 318 ---HLLKLCDGLLEWCEPEKVSLALPSLRADNFSMNLMHRLQHGKK--SGLTFAPEAGTQ 372

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPD--IAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           R+  ++N+  T      ++   R+       ++   F++G P ETD+D     DL +K+ 
Sbjct: 373 RLRDAINKNVTEE---DLLQSCRTAFSGGWSSVKLYFMLGLPTETDEDVLGIADLAEKVY 429

Query: 359 YAQ--------------AFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVS 404
            A                 +  + P+  T       Q+       R+  L+  +R + +S
Sbjct: 430 QAWRETTPEPRRGVRITVSTSFFVPKPHT-AFQWEAQISMEEYQRRVKLLRDNMRGRSIS 488

Query: 405 FN 406
           +N
Sbjct: 489 YN 490


>gi|148265974|ref|YP_001232680.1| radical SAM domain-containing protein [Geobacter uraniireducens
           Rf4]
 gi|146399474|gb|ABQ28107.1| Radical SAM domain protein [Geobacter uraniireducens Rf4]
          Length = 566

 Score = 70.4 bits (171), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 55/260 (21%), Positives = 94/260 (36%), Gaps = 34/260 (13%)

Query: 111 QAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGY 170
           Q   +E+L+    V  +        +P L E    G R+V              I D   
Sbjct: 175 QIGRDELLKHCARVPGIY-------VPSLYETVYEGGRLVSRTPLAGAPPTVRRIWDEEA 227

Query: 171 NRKRGVTAFLT------------IQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLI 218
            R+   +  LT            +  GC + C FC   +       R+L  V  E  K +
Sbjct: 228 GRRPTTSEILTEATEFADMYLIEVSRGCPRGCRFCAAGFIYLPYRQRTLEAVKAEVTKGL 287

Query: 219 DNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLI 278
                 I L+G  V+ + G G         DL   + +  G  ++  ++     + D LI
Sbjct: 288 QERQR-IGLVGAAVSDYHGIG---------DLCRYILDQGG--KISVSSLRIDGLDDELI 335

Query: 279 KAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVG 338
           +A  +       + L  + GS R+   + +  +  +     DR+   R  + +   FI+G
Sbjct: 336 EALKESGH--KTVALAPEGGSQRLRDLIRKNISEEQILAACDRLIG-RDILNLKLYFIIG 392

Query: 339 FPGETDDDFRATMDLVDKIG 358
            P ET  D    + LV++I 
Sbjct: 393 LPTETAADLDEMVGLVERIR 412


>gi|162449004|ref|YP_001611371.1| hypothetical protein sce0734 [Sorangium cellulosum 'So ce 56']
 gi|161159586|emb|CAN90891.1| hypothetical protein sce0734 [Sorangium cellulosum 'So ce 56']
          Length = 568

 Score = 70.4 bits (171), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 56/313 (17%), Positives = 110/313 (35%), Gaps = 44/313 (14%)

Query: 90  LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVV---VGPQTYYRLPELLERARFG 146
           L +   +     + ++ G  A    E I  ++P ++VV    G      L + L R    
Sbjct: 110 LNHHIKQHYPKAVSLMGGPHATYYPEVI--QTPGLDVVCQGEGEDAAVELCDALARGDDH 167

Query: 147 KRVVDTDYSVEDKFER---------LSIVDGGYNR---------KRGVTAFLTIQEGCDK 188
           + + D     E K  R         L  +     R         +R      T   GC  
Sbjct: 168 RGIRDLWVKSEGKIYRNPARGLRRDLDAIPFPPRRLLYEYDDSLRRRPLKSFTTNRGCPF 227

Query: 189 FCTFCVVPYT-------RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD 241
            C++C  P               RS   VV E   ++  G  +     +++  +  + L 
Sbjct: 228 PCSYCFNPSLVEHYGSSWKKVRVRSPENVVAELAHVMKQGPLQFVGFRESIFVYDAEWL- 286

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
                F +L     ++       Y       M++ ++            +++ +++ +  
Sbjct: 287 ---RQFGELYRREVKLP-----YYCHLRADMMTEEMVDLLAWSG--CYTVNVGIETANPE 336

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSV-RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
           +   + RR       +++  IR + R  I + +D I+G PG T +D  AT++L  ++   
Sbjct: 337 LANGVLRR--QIRMDRLVHGIRLLKRAGIVVFADNILGIPGGTLEDDLATLELNIELDVD 394

Query: 361 QAFSFKYSPRLGT 373
            A +   +P  GT
Sbjct: 395 YAAATLCTPYPGT 407


>gi|23015349|ref|ZP_00055128.1| COG1032: Fe-S oxidoreductase [Magnetospirillum magnetotacticum
           MS-1]
          Length = 494

 Score = 70.0 bits (170), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 51/263 (19%), Positives = 92/263 (34%), Gaps = 27/263 (10%)

Query: 130 PQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQE----- 184
           P  ++R  E   +A   +  + TD   E       ++     R      F  I E     
Sbjct: 162 PSLWWRDSEGRIQAPAEREPLVTDLDGEMPGIAWDLLPMDRYRAHNWHCFTHINERQPYA 221

Query: 185 ------GCDKFCTFCVV--PYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAW 235
                 GC   C+FC +  P+ +      S   VV E   L++  GV  I  + +     
Sbjct: 222 SMHTSLGCPYHCSFCCINAPFGKPSYRLWSPQVVVSEIDFLVERYGVKNIKFVDE----- 276

Query: 236 RGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPV 295
                   K   + +   L+     V + +       M D L+         + ++ L +
Sbjct: 277 ---MFVLNKRHVAGICDLLATRDYDVNI-WAYGRVDTMHDELLDKLKAGG--VNWICLGI 330

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
           +S SD +     +  T  +    + RI+S    I I  +++ G P +T    + TMDL  
Sbjct: 331 ESASDYVRDGAEKVFTNQDVIDTVRRIQSA--GIHIIGNYVFGLPDDTIPRMQQTMDLAQ 388

Query: 356 KIGYAQAFSFKYSPRLGTPGSNM 378
           ++    A  +      G+   +M
Sbjct: 389 ELNCEFANFYSAMAYPGSKLYDM 411


>gi|320010886|gb|ADW05736.1| oxygen-independent coproporphyrinogen III oxidase [Streptomyces
           flavogriseus ATCC 33331]
          Length = 413

 Score = 70.0 bits (170), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 51/241 (21%), Positives = 89/241 (36%), Gaps = 25/241 (10%)

Query: 186 CDKFCTFCVV--------PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG 237
           C   C +C            + G   SR      + A  L++       +LG +    R 
Sbjct: 42  CATRCGYCDFNTYTATELRGSGGALASRD-----NYAAHLVEEVRQARKVLGDDPRPVRT 96

Query: 238 KGLDGEKCTF---SDLLYSLSEIK---GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL 291
             + G   T    +DL+  L+ I+   GL      T+     S          +     +
Sbjct: 97  VFVGGGTPTLLPAADLVRMLAAIREEFGLAEDAEITTEANPESVDPAYLAALREGGFNRV 156

Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351
              +QS    +LK ++R HT       +   R+   D  ++ D I G PGE+DDD+RA++
Sbjct: 157 SFGMQSARQHVLKVLDRTHTPGRPEACVAEARAAGFD-HVNLDLIYGTPGESDDDWRASL 215

Query: 352 DLVDKIGYAQAFSFKYSPRLGTPGSN--MLEQVD---ENVKAERLLCLQKKLREQQVSFN 406
           D     G     ++      GT  +      +V    ++V A+R L   + +     S+ 
Sbjct: 216 DAAIGAGPDHVSAYALIVEEGTQLARRIRRGEVPMTDDDVHADRYLIADEAMAAAGFSWY 275

Query: 407 D 407
           +
Sbjct: 276 E 276


>gi|302551342|ref|ZP_07303684.1| coproporphyrinogen III oxidase [Streptomyces viridochromogenes DSM
           40736]
 gi|302468960|gb|EFL32053.1| coproporphyrinogen III oxidase [Streptomyces viridochromogenes DSM
           40736]
          Length = 429

 Score = 70.0 bits (170), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 46/242 (19%), Positives = 88/242 (36%), Gaps = 27/242 (11%)

Query: 186 CDKFCTFCVV-PYTRGIEI-------SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG 237
           C   C +C    YT            SR      + A  L++       +LG +    R 
Sbjct: 58  CATRCGYCDFNTYTATELRGTGGVLASRD-----NYAETLVEEVRLARKVLGDDPRPVRT 112

Query: 238 KGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDC-------LIKAHGDLDVLMPY 290
             + G   T  D    L  + G +R  +  +   +++                 +     
Sbjct: 113 VFVGGGTPTLLDAGD-LVRMLGAIRDEFGLAPDAEVTTEANPESVGPAYLAALREGGFNR 171

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
           +   +QS    +LK ++R HT     + +   R+   +  ++ D I G PGE+DDD+RA+
Sbjct: 172 ISFGMQSARQHVLKVLDRTHTPGRPERCVAEARAAGFE-HVNLDLIYGTPGESDDDWRAS 230

Query: 351 MDLVDKIGYAQAFSFKYSPRLGTPGSN--MLEQVD---ENVKAERLLCLQKKLREQQVSF 405
           ++     G     ++      GT  +      +V    ++V A+R L  ++ L      +
Sbjct: 231 LEAALGAGPDHVSAYALIVEEGTQLARRIRRGEVPMTDDDVHADRYLIAEEMLSAAGFEW 290

Query: 406 ND 407
            +
Sbjct: 291 YE 292


>gi|322421288|ref|YP_004200511.1| Radical SAM domain-containing protein [Geobacter sp. M18]
 gi|320127675|gb|ADW15235.1| Radical SAM domain protein [Geobacter sp. M18]
          Length = 559

 Score = 70.0 bits (170), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 43/219 (19%), Positives = 72/219 (32%), Gaps = 18/219 (8%)

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGY-NRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
            A  G           D   R S+ +    N +      + +  GC + C FC   +   
Sbjct: 210 EALPGAPARVRRVWDPDPKSRPSVTEIHTDNTEFSGMHLVELSRGCPRACRFCAAGFIYL 269

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
              +R    V  E  + +  G     L+   V+ + G G         DL   +    G 
Sbjct: 270 PYRTRDPELVRREVLEGVAQGRKVG-LVAAAVSDYSGIG---------DLCCDIVAAGGK 319

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
                ++     +   +I A          + L  + GS R+   + +     +     D
Sbjct: 320 FS--VSSFRIDHLDGRMIDALKASGQ--KSVALAPEGGSQRLRDLVKKGINEEQILSACD 375

Query: 321 RIRSVRPDI-AISSDFIVGFPGETDDDFRATMDLVDKIG 358
            +  V  DI  +   FI+G P ET +D    + LV KI 
Sbjct: 376 ML--VSHDILNLKLYFIIGLPTETQEDLEELVALVGKIR 412


>gi|168182714|ref|ZP_02617378.1| putative B12-binding Fe-S oxidoreductase [Clostridium botulinum Bf]
 gi|182674105|gb|EDT86066.1| putative B12-binding Fe-S oxidoreductase [Clostridium botulinum Bf]
          Length = 559

 Score = 70.0 bits (170), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 49/310 (15%), Positives = 109/310 (35%), Gaps = 38/310 (12%)

Query: 60  DDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILR 119
           + ADL+   +C+I           L  +  L N          +V  G     + E  LR
Sbjct: 54  EKADLVAF-SCYIWN---------LEYVEQLANLIKLVKPSTQIVFGGPEVSYDSESFLR 103

Query: 120 RSPIVNVVVGPQTYYRLPELLERARFGKRVVD------------TDYSVEDKFERLSIVD 167
           + P   V+ G         +  + + G + +D             +Y+ E     ++ V 
Sbjct: 104 KVPGEYVIEGEGEKTFREFI--KCKIGNKSLDRVKGLYIKTLNGIEYTGERHNISMNSVV 161

Query: 168 GGYNRKRGV---TAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCE 224
             Y ++  +     +     GC   C +C+     G      + +V  E + L+D  V  
Sbjct: 162 FPYKKEEDLKNKIVYYEASRGCPFKCKYCLSSTLHG-VRFHDIERVKKEIKFLVDKNVKL 220

Query: 225 ITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL 284
           I  + +  N      +   +   +    +           +       ++   ++     
Sbjct: 221 IKFVDRTFNCNHKFAMGIWEYILNLDTDA---------TFHFEISADLLTKEQLEILSKG 271

Query: 285 DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETD 344
                   + VQ+ ++ +LK++NR       ++ ++ +++++ +I    D I G PGE  
Sbjct: 272 KEGRIQFEVGVQTTNNEVLKNINRHVNFETIKEKVEELKNLK-NIKQHLDLIAGLPGEDY 330

Query: 345 DDFRATMDLV 354
           + F+ + + V
Sbjct: 331 NSFKNSFNDV 340


>gi|302808877|ref|XP_002986132.1| hypothetical protein SELMODRAFT_446506 [Selaginella moellendorffii]
 gi|300145991|gb|EFJ12663.1| hypothetical protein SELMODRAFT_446506 [Selaginella moellendorffii]
          Length = 936

 Score = 70.0 bits (170), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 37/172 (21%), Positives = 67/172 (38%), Gaps = 23/172 (13%)

Query: 169 GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLL 228
              RK      + I  GC   CT+C   + RG   S ++  +V   + ++  G      +
Sbjct: 38  PLVRKNKFVEIIPINVGCLGACTYCKTKHARGHLGSYTVDTLVQRLKTVVSEG----RDI 93

Query: 229 GQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLM 288
           G N+ A     +                     R +Y  S+    +      +G    + 
Sbjct: 94  GANIPALLRALVAALPH----------------RQKYNASNLHLTASG---GNGCHPCVY 134

Query: 289 PYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFP 340
            +LH+ VQSG D +L+ M R +T  E+R+I+D +  + P+    +  +   P
Sbjct: 135 LFLHVLVQSGRDSVLQGMKREYTFSEFRKIVDTLTRLVPETGTPAALMKRVP 186



 Score = 38.8 bits (89), Expect = 1.9,   Method: Composition-based stats.
 Identities = 20/138 (14%), Positives = 48/138 (34%), Gaps = 6/138 (4%)

Query: 55  RVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG 114
             +S   ADL ++NTC ++    E +    G+  ++   R  +  +++ +  GC+     
Sbjct: 3   ISDSPQRADLWLINTCTVKAPTMETLICK-GKAASIPLVRKNKFVEIIPINVGCLGACT- 60

Query: 115 EEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKR 174
                ++      +G  T   L + L+      R +  +     +    ++         
Sbjct: 61  ---YCKTKHARGHLGSYTVDTLVQRLKTVVSEGRDIGANIPALLRALVAALPHRQKYNAS 117

Query: 175 GVTAFLTIQEGCDKFCTF 192
            +    +   GC   C +
Sbjct: 118 NLHLTASGGNGC-HPCVY 134


>gi|296108754|ref|YP_003615703.1| Radical SAM domain protein [Methanocaldococcus infernus ME]
 gi|295433568|gb|ADG12739.1| Radical SAM domain protein [Methanocaldococcus infernus ME]
          Length = 431

 Score = 70.0 bits (170), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 64/374 (17%), Positives = 138/374 (36%), Gaps = 44/374 (11%)

Query: 41  SLRMEDMFFSQGYER-VNSMDDADLIV-LNTCHIREKAAEKVYSFLGRIRNLKNSRIKEG 98
           +  +       GY      +++  L+   +T  I  +     ++ +  IR L+       
Sbjct: 19  THILLTHLSKFGYNVGAYFLENYHLVRGASTIFITLQYENDYFNAIKIIRELREKNP--- 75

Query: 99  GDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER--------ARFGKRVV 150
             L V    CV +      L     V +V   +    + +++ R             + V
Sbjct: 76  NALFVAGGPCVMENLHP--LEDFFDVFIVGEIEDSDVMDKVVRRDFSDSCLYIPNKTKKV 133

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLT-IQEGCDKFCTFCVVPYTRGIEISRSLSQ 209
              Y      E   I    + +     AFL  I  GC + C FC+          R L  
Sbjct: 134 KKIYPKRLGIEDYPIKQMTHEKGAYGKAFLLEIGRGCPRRCRFCLARAIYYPPRFRKLDD 193

Query: 210 VVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
           ++  A + +    V ++ L+  +V  ++            +L   L+E+   V++  ++ 
Sbjct: 194 LIYLAERGVKESKVNKVALIAPSVGDYKY---------IVELCNYLNELN--VQISPSSL 242

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
               ++D L++A       +  L +  ++GS+R+ + + +  +  + R  I+  +     
Sbjct: 243 RADTITDDLLRALK-----LKTLTIAPEAGSERLREYIRKDISLEDIRNAIELAKK--HG 295

Query: 329 I-AISSDFIVGFPGETDDDFRATMDLVD----KIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           I  +   F+VG P ET+DD +  + L +    +    +       P+  T      E V 
Sbjct: 296 IEKVKLYFMVGIPTETEDDIKELISLCESIKKEFRKVEITINPLIPKPHTD----FENVP 351

Query: 384 ENVKAERLLCLQKK 397
            +++++R +   +K
Sbjct: 352 FDIESKRKIRFIEK 365


>gi|29832109|ref|NP_826743.1| coproporphyrinogen III oxidase [Streptomyces avermitilis MA-4680]
 gi|29609227|dbj|BAC73278.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Streptomyces avermitilis MA-4680]
          Length = 410

 Score = 70.0 bits (170), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 52/247 (21%), Positives = 88/247 (35%), Gaps = 37/247 (14%)

Query: 186 CDKFCTFCVV-PYTRGIEI-------SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG 237
           C   C +C    YT            SR      + A  LID       +LG +    R 
Sbjct: 39  CATRCGYCDFNTYTATELRGTGGVLASRD-----NYAETLIDEVRLARKVLGDDPRPVRT 93

Query: 238 KGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL------ 291
             + G   T       L  + G VR  +  +   +++        + + + P        
Sbjct: 94  VFVGGGTPTL-LAADDLVRMLGAVRDEFGLADDAEVTTE-----ANPESVDPAYLATLRA 147

Query: 292 ------HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDD 345
                    +QS    +LK ++R HT     + +   R+   D  ++ D I G PGETDD
Sbjct: 148 GGFNRVSFGMQSARQHVLKVLDRTHTPGRPERCVAEARAAGFD-HVNLDLIYGTPGETDD 206

Query: 346 DFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN--MLEQVD---ENVKAERLLCLQKKLRE 400
           D+RA++D     G     ++      GT  +      +V    ++V A+R L   + L  
Sbjct: 207 DWRASLDAALGAGPDHISAYALIVEEGTQLARRIRRGEVPMTDDDVHADRYLIADEILSS 266

Query: 401 QQVSFND 407
               + +
Sbjct: 267 AGFDWYE 273


>gi|327189430|gb|EGE56594.1| Mg-protoporphyrin IX monomethyl ester oxidative cyclase subunit
           protein [Rhizobium etli CNPAF512]
          Length = 509

 Score = 70.0 bits (170), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 54/328 (16%), Positives = 103/328 (31%), Gaps = 37/328 (11%)

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVV---GPQTYYRLPELLERA 143
            R +  +       + +V  G        E+L  +   +++V   G +T  RL E L   
Sbjct: 82  ARAIAEAIKCRDPAIRIVYGGVFPTYHWREVLAETEAFDILVRGEGEETMRRLAEALAAN 141

Query: 144 RFGKRVVDTDY-----SVEDKFERLSIVDGGYNR-------------KRGVTAFL-TIQE 184
           R    V    Y      +       +I D    R               G  A +     
Sbjct: 142 RPLDAVAGIAYRDGHGEIHATRPAQAIADLDGYRIGWELIDHARYSYWGGKRAVVMQFSR 201

Query: 185 GCDKFCTFCVVPYTRGIEISRSLSQV-VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
           GC   C +C           RS      + AR   + GV  I L  +N  + R       
Sbjct: 202 GCPHLCNYCGQRGFWTRWRHRSPELFAREIARLYREQGVELINLADENPTSSR------- 254

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
           +   + L   ++E   +  +  T +        ++  +    V+     L +++  +  L
Sbjct: 255 RAWLAFLEAMIAENVPVQIVGSTRADDIVRDADILHLYRKAGVVR--WLLGMENTDEATL 312

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
             + +       R+ I  +R    DI   + ++VGF  E   D       +      Q  
Sbjct: 313 ALIKKGGAKTTDREAIRLLRQ--HDILSMATWVVGFEEEKLSDLWRGFRQLLSYDPDQIQ 370

Query: 364 SFKYSPRLGTPGSNMLEQ---VDENVKA 388
           +   +P   TP   +      ++ +++ 
Sbjct: 371 ALYVTPHRWTPFFRIARDRQVIETDIRK 398


>gi|182416818|ref|ZP_02625104.2| radical SAM domain protein [Clostridium butyricum 5521]
 gi|237667236|ref|ZP_04527220.1| radical SAM N- domain protein [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|182379280|gb|EDT76779.1| radical SAM domain protein [Clostridium butyricum 5521]
 gi|237655584|gb|EEP53140.1| radical SAM N- domain protein [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 674

 Score = 70.0 bits (170), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 50/292 (17%), Positives = 90/292 (30%), Gaps = 53/292 (18%)

Query: 183 QEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEAR----------KLIDNGVCEITLLGQN 231
             GC   C FC +   +G  + SRS   ++ E             + D G          
Sbjct: 307 SRGCFGDCKFCAITLHQGRVVQSRSKESILKEIEGITHLPDFKGYIHDVGGPTANFRKPA 366

Query: 232 ------VNAWRGK---------GLDGEKCTFSDLLYSLSEIKGLVR------LRYTTSHP 270
                   A +GK          +D +   + DLL S+ ++ G+ +      LRY     
Sbjct: 367 CDRQLAFGACKGKECLSPSVCSNMDVDHTEYLDLLRSIRKVPGVKKAFVRSGLRYDYIMA 426

Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330
                   +       +   L +  +  S ++LK M +  +   Y + + +   +   I 
Sbjct: 427 DKDDTFFKELV--EHHVSGQLKVAPEHVSAQVLKYMGKP-SGNTYDRFVSKFEKITKKIG 483

Query: 331 ----ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ-VDEN 385
               I    +   PG T +      + +  I Y       + P  GTP + +    +D  
Sbjct: 484 KKQYIVPYLMSSHPGSTLECAIELAEYLRDINYHPEQVQDFYPTPGTPSTTIYYTGIDPI 543

Query: 386 VKAE----RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSP 433
              E    +    +   R      N      + E L+E          GR+ 
Sbjct: 544 TMKEVYVPKSKHEKAMQRALLQYRNPKYYNLVYEALVE---------AGRTD 586


>gi|239616829|ref|YP_002940151.1| Radical SAM domain protein [Kosmotoga olearia TBF 19.5.1]
 gi|239505660|gb|ACR79147.1| Radical SAM domain protein [Kosmotoga olearia TBF 19.5.1]
          Length = 516

 Score = 70.0 bits (170), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 52/315 (16%), Positives = 108/315 (34%), Gaps = 33/315 (10%)

Query: 57  NSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEE 116
             + ++D + ++   ++    E V   + R   L         ++ V+  G +   E + 
Sbjct: 62  KDVRNSDYVFISAMAVQ---RESVKDVIRRCNEL---------NVPVIAGGPLFTMEPD- 108

Query: 117 ILRRSPIVNVVVGPQTYYRLPELLERARFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRG 175
                P  +  V  +    +PEL+E    GK +         D  +         + K  
Sbjct: 109 ---HFPNADHFVLGEAEEIMPELVEDIENGKLKRYYASPDFPDITKAPVPRWDLLHLKWY 165

Query: 176 VTAFLTIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVCEITLLGQNVNA 234
            +  +    GC   C FC +    G    S+S  Q++ E + L D G         +   
Sbjct: 166 YSMGIQYSRGCPFDCEFCEIGALNGHVPRSKSTEQIIQELQTLYDLGWRRSVFFVDD--N 223

Query: 235 WRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT----TSHPRDMSDCLIKAHGDLDVLMPY 290
           + GK  D ++     +L ++ E +      +T     S      D L+            
Sbjct: 224 FIGKRFDLKR----KVLPAIIEWQKAHNYPFTFYTEVSIDLADDDELVNLM--TRAGFNR 277

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQI-IDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           + + +++     LK  N+        +  ++++ S    + +   FI+GF  +T   F+ 
Sbjct: 278 VFVGIETPDKESLKETNKYQNIKHNLEKSVEKLHSS--GLEVQGGFIIGFDHDTPSIFKR 335

Query: 350 TMDLVDKIGYAQAFS 364
               + + G   A  
Sbjct: 336 QFSFIQRTGIVTAMV 350


>gi|119776481|ref|YP_929221.1| hypothetical protein Sama_3349 [Shewanella amazonensis SB2B]
 gi|119768981|gb|ABM01552.1| conserved hypothetical Fe-S oxidoreductase [Shewanella amazonensis
           SB2B]
          Length = 806

 Score = 70.0 bits (170), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 62/370 (16%), Positives = 117/370 (31%), Gaps = 58/370 (15%)

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
            + +     K        V     +   E+    +    ++   Q       L +     
Sbjct: 280 AKPISIQPPKPRPWEQTYVLLPAFERVSEDRYLYAHASRILHQEQNPGCARALFQPHGDR 339

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNR-------KRGVTAF------LTIQEGCDKFCTFC 193
              V+         E  ++ D  Y R       K  + A+      + I  GC   C+FC
Sbjct: 340 GIWVNPPAWPLSTEEMDAVFDLPYQRVPHPVYGKEKIPAYDMIKTSINIMRGCFGGCSFC 399

Query: 194 VVPYTRGIEI-SRSLSQVVDEARKLIDN--GVCEIT--LLGQNVNAWR------------ 236
            +    G  I SRS   +V E + +     G   +   L G   N +R            
Sbjct: 400 SITEHEGRIIQSRSKESIVKEIKDIQAKVPGFTGVISDLGGPTANMYRLGCKSEKAEKTC 459

Query: 237 ----------GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV 286
                        LD +     DL  +  ++ G+ ++   +    D++    +   +L  
Sbjct: 460 RRLSCVFPSICGHLDTDHQHTIDLYRAARDVPGIKKVLIASGVRYDLAIEDPRYVKELAK 519

Query: 287 --LMPYLHLPVQSGSDRILKSMNRR--HTAYEYRQIIDRI-RSVRPDIAISSDFIVGFPG 341
             +  YL +  +   +  L  M +    T  +++++ D+  +    +  +   FI   PG
Sbjct: 520 HHVGGYLKIAPEHTEEGPLSKMMKPGMGTYDKFKELFDKYSKEAGKEQYLIPYFISAHPG 579

Query: 342 ETDDDFRATMDLVDKIGY--AQAFSFKYSPRLG------TPGSNMLE--QVDENV---KA 388
            TD+D       + +  +   Q  +F  SP         T  +++       E V   K 
Sbjct: 580 TTDEDMVNLALWLKERKFKLDQVQNFYPSPMANATTIYHTELNSLKNVKHSSEEVPVPKK 639

Query: 389 ERLLCLQKKL 398
            R   L K L
Sbjct: 640 GRQRRLHKAL 649


>gi|189425262|ref|YP_001952439.1| cobalamin B12-binding domain protein [Geobacter lovleyi SZ]
 gi|189421521|gb|ACD95919.1| cobalamin B12-binding domain protein [Geobacter lovleyi SZ]
          Length = 475

 Score = 70.0 bits (170), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 33/197 (16%), Positives = 69/197 (35%), Gaps = 19/197 (9%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGI-EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK 238
           +    GC   C+FC V          RS++ VV++     D        +  ++  +   
Sbjct: 193 IETARGCPHRCSFCSVWQLYDRTCRERSIAAVVEDFATSGD-----AVFVADDLFWY--- 244

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHL--PVQ 296
                     +L  +L + +G+ +         D+             L     +   ++
Sbjct: 245 ----NPARSLELAAALKK-RGVYKRWILVQTRTDLICRSAAIMAAWRPLAKDFDIFLGLE 299

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
           + SD  L  +++     E  + +   R ++  I    +F+V  P   ++ FR     V++
Sbjct: 300 AASDNGLSGLDKDSGIKESIEAVRIARELKYGIN--GNFLVD-PDWDEEGFRQLWGFVEQ 356

Query: 357 IGYAQAFSFKYSPRLGT 373
            G  +A     +P  GT
Sbjct: 357 YGLQRAGFTILTPLPGT 373


>gi|159904694|ref|YP_001548356.1| radical SAM domain-containing protein [Methanococcus maripaludis
           C6]
 gi|159886187|gb|ABX01124.1| Radical SAM domain protein [Methanococcus maripaludis C6]
          Length = 510

 Score = 70.0 bits (170), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 55/391 (14%), Positives = 134/391 (34%), Gaps = 56/391 (14%)

Query: 125 NVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVD----GGYNRKRGVTAFL 180
           +V+        L +LL+     ++   T     D+ +  + +       +     + A +
Sbjct: 128 DVISEGDLDAVLHDLLKNNLNPEKTDGTRLRTYDELDEFARIGAKIVKFHPSYPNIIAEI 187

Query: 181 TIQEGC----DKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR 236
               GC       C+FC  P        R+   +++E R L +NG+    +  Q      
Sbjct: 188 ETYRGCARAFSGGCSFCTEPRRYSSPKFRNSIDIIEEVRNLHENGIKYFRIGRQPCMFSY 247

Query: 237 GKGLDGEKCTFSDLLYSLSEIKGLVRLR--YTTSHPRDMSDCLIKAHGDLDV-------- 286
                 +  +    + ++ EI+ L +     +      + +         +         
Sbjct: 248 MAK---DAESMDVPVPNVLEIEKLFKGITSVSNPDVLHIDNANPSVIARHEKEGREIAKI 304

Query: 287 LMPY------LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV--------RPDIAIS 332
           L+ Y          V+S  ++++          +  + +D +  +         P +   
Sbjct: 305 LVRYCTPGNVAAFGVESFDEKVISKNCLLTEPEDVLKAVDILNEIGGKRGENGMPYLLPG 364

Query: 333 SDFIVGFPGETDDDFRATMDLVDKIGYA------QAFSFKYSPRLGTPGSNMLEQVDENV 386
            + + G  GE++D F    D + +I Y       +    +  P  GT  +  ++ V++  
Sbjct: 365 INLLSGLKGESNDTFEINYDYLKEI-YDSGNMIRRINIRQVVPFFGTDLT--IKDVEKA- 420

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIE-------VLIEKHGKEKGKLVGR--SPWLQS 437
             +R     K   + +   ++  + +++        VL+E   ++     GR    +   
Sbjct: 421 -KKRKNLFLKFKEKIRTEIDNPMLKRMLPTDTLLKNVLVE-VKEKNDLYFGRQFGSYPIL 478

Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           + +  KN  IG  + + +T     ++ G++V
Sbjct: 479 IGIAEKNVEIGKFVDIMVTGYGRRSITGKIV 509


>gi|152984060|ref|YP_001350975.1| hypothetical protein PSPA7_5654 [Pseudomonas aeruginosa PA7]
 gi|150959218|gb|ABR81243.1| conserved hypothetical protein [Pseudomonas aeruginosa PA7]
          Length = 747

 Score = 70.0 bits (170), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 48/298 (16%), Positives = 97/298 (32%), Gaps = 47/298 (15%)

Query: 117 ILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGY---NRK 173
           ++++   V+V   P       E            + DY     + R+     G       
Sbjct: 325 LVQKHGEVDVWFNPPPIPMSTE------------EMDYVFGMPYARVPHPAYGKAKIPAY 372

Query: 174 RGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDN--GVCEIT--LL 228
             +   + I  GC   CTFC +    G  I +RS   ++ E  ++ D   G   +   L 
Sbjct: 373 EMIRFSVNIMRGCFGGCTFCSITEHEGRIIQNRSHESIIREIEEMRDKVPGFTGVVSDLG 432

Query: 229 GQNVNAWR----------------------GKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
           G   N +R                       + LD +  +  +L      + G+ ++   
Sbjct: 433 GPTANMYRIACKSADIEKHCRKPSCVFPGICENLDTDHSSLIELYRKARALPGVKKILIA 492

Query: 267 TSHPRDMSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRR--HTAYEYRQIIDRI 322
           +    D++    +   +L    +  YL +  +      L  M +    T   ++Q+ ++ 
Sbjct: 493 SGLRYDLAVESPEYVRELVTHHVGGYLKIAPEHTERGPLDKMMKPGIGTYDRFKQMFEKF 552

Query: 323 -RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            +    +  +   FI   PG TD+D       + + G+       + P      + M 
Sbjct: 553 SKEAGKEQYLIPYFIAAHPGTTDEDMMNLALWLKRNGFRADQVQAFYPSPMATATAMY 610


>gi|76666843|emb|CAJ31220.1| Radical SAM superfamily [uncultured sulfate-reducing bacterium]
          Length = 427

 Score = 70.0 bits (170), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 51/298 (17%), Positives = 91/298 (30%), Gaps = 32/298 (10%)

Query: 80  VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNV------------- 126
               L  I  L     +      +V+ G  A    +E L   P V+              
Sbjct: 67  YQRNLPHIIALARLIKQNLPGASIVLGGPHASLMPDEGLAALPDVDFLCRGEGEAAIEAI 126

Query: 127 ---VVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVD--GGYNRKRGVTAFLT 181
              V+       +P    R   G  V           +R       G  +      + + 
Sbjct: 127 AEAVLSGDASQAVPGATRRTSDGGIVTGPAIEPARDLDRYPSPWLSGILDPASMSESIML 186

Query: 182 IQEGCDKFCTFCVVPYTRGIEISR-SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL 240
              GC   C FC  P      I   S+ +V++E   + + G   +     N +    + +
Sbjct: 187 ASRGCPHSCVFCYTPAAFDRRIQYNSIDRVLEEIAYVAERGTGRLWFADPNFSFSEKRVI 246

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300
                    +L    E++  V  R        ++  LI+      V +  + + ++S S 
Sbjct: 247 G----ILEGILSRNLEVEMWVETR-----ADMLTAELIRLMKRAGVYL--VAMGLESASP 295

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
            +   +N+     E R+          D+ + S F    P E  +D  AT+  V   G
Sbjct: 296 NVYPGLNKNLQPEEIREAARLALEAGLDVELFSQF--ALPNEKLEDAMATLQFVKDCG 351


>gi|313906018|ref|ZP_07839371.1| Coproporphyrinogen dehydrogenase [Eubacterium cellulosolvens 6]
 gi|313469131|gb|EFR64480.1| Coproporphyrinogen dehydrogenase [Eubacterium cellulosolvens 6]
          Length = 524

 Score = 70.0 bits (170), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 33/204 (16%), Positives = 76/204 (37%), Gaps = 22/204 (10%)

Query: 173 KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQ-- 230
           ++G + ++ I   C   C +C          S  +    D  +   +    E+  + +  
Sbjct: 200 EKGYSLYVGIPF-CPTICLYCS-------FGSHRMDTYRDMVKPYFEALYKELRFISEEM 251

Query: 231 ---NVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD------MSDCLIKAH 281
              ++++    G      +   L   L E++    L        +      +++  ++  
Sbjct: 252 KDWHLDSLYIGGGTPTSVSAEQLRELLQELEKNFDLENLAEFTIEAGRPDTITEDKLRVM 311

Query: 282 GDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPG 341
            +    +  + +  Q+ + + L  + R HT  + R+I    RS+  D  I+ D IVG PG
Sbjct: 312 REFP--VTRISINPQTMNQKTLDLIGRHHTVEQTREIFLLARSLGFD-NINMDIIVGLPG 368

Query: 342 ETDDDFRATMDLVDKIGYAQAFSF 365
           E   + + T+D + ++        
Sbjct: 369 EGAAEVQETLDRIKEMDPDSLTVH 392


>gi|239618117|ref|YP_002941439.1| Radical SAM domain protein [Kosmotoga olearia TBF 19.5.1]
 gi|239506948|gb|ACR80435.1| Radical SAM domain protein [Kosmotoga olearia TBF 19.5.1]
          Length = 450

 Score = 70.0 bits (170), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 53/303 (17%), Positives = 103/303 (33%), Gaps = 44/303 (14%)

Query: 99  GDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVED 158
            ++ VV+ G  A    E     S    V  G          +   +     +  D  + D
Sbjct: 137 PEIPVVLGGVYASILPEHAKNHSGADFVSPGTG--------IVPVKRALHFIGIDVDLND 188

Query: 159 KF-ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKL 217
            + + LS     Y     V   L    GC   C++C           +S  + ++E   L
Sbjct: 189 NWLDDLSPDYSNYPELNYVV--LITSTGCPFRCSYCTSWKLWERFNQKSPEKTLEEIEHL 246

Query: 218 IDNG-------VCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT-SH 269
                        +  L+GQN               F  LL  + E    +R       H
Sbjct: 247 NAMYGLSDVVFFDDAILIGQN---------------FKTLLKMIKERGFNLRFHLPNGIH 291

Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329
            R + + L     + +     + L  ++ +D +      + +  E+ + ++ +++     
Sbjct: 292 ARLVDEELAVLMKETN--FKTIKLGYETANDELQLKTGGKVSNEEFIKAVNILKAAGFTA 349

Query: 330 A-ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
             +S+  I   PG+T +D    ++  +++G       +Y+P  GTP      +  E V +
Sbjct: 350 KELSAYIIANLPGQTFEDVERAINHCEELGVI-PNINEYTPIPGTP------EWRELVDS 402

Query: 389 ERL 391
            RL
Sbjct: 403 RRL 405


>gi|170291224|ref|YP_001738040.1| radical SAM domain-containing protein [Candidatus Korarchaeum
           cryptofilum OPF8]
 gi|170175304|gb|ACB08357.1| Radical SAM domain protein [Candidatus Korarchaeum cryptofilum
           OPF8]
          Length = 498

 Score = 70.0 bits (170), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 46/237 (19%), Positives = 91/237 (38%), Gaps = 23/237 (9%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
           L I  GC   C FC + +     +   +++V +      D G  EI ++G +  + +   
Sbjct: 185 LEISRGCGWGCRFCGMGWHWRPRLDAPMNEVREAIEYASDLGFREIFIIGSDAASSK--- 241

Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
                    D L+ ++EI   ++    +     +   L+            + +  ++GS
Sbjct: 242 ------AIKDTLWEIAEIG--LKASTPSIRADQVDVELLDLIRSTGG--RMITIAPETGS 291

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSV-RPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           DR+   +N+R    E  +  +  R +    I +   F++G P E + D   +  L  K+ 
Sbjct: 292 DRLKGIINKRIDNDEIIRTAEEARDMGMKHIKLY--FMIGLPFERESDVVESAKLASKVN 349

Query: 359 ---YAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQ 412
               A+     + P+ GTP   +   + E     RL   +   RE +   N +  G+
Sbjct: 350 SILRAKVTLSVFVPKAGTP-FELSPLIREPDFRRRLSIFR---REYRGEMNVSHYGR 402


>gi|15643533|ref|NP_228579.1| hypothetical protein TM0770 [Thermotoga maritima MSB8]
 gi|4981298|gb|AAD35852.1|AE001746_13 conserved hypothetical protein [Thermotoga maritima MSB8]
          Length = 599

 Score = 70.0 bits (170), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 45/237 (18%), Positives = 93/237 (39%), Gaps = 17/237 (7%)

Query: 177 TAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAW 235
            A + +  GC + C FC           RSL  +++   +++ N G  E++LL  +    
Sbjct: 251 RAVIEVARGCTRGCRFCHASVYYRPVRERSLENILENVEEMLKNTGYEEVSLLSLSTMDH 310

Query: 236 RGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPV 295
              G        S+LL   SE K  V +  T          +      +      L    
Sbjct: 311 TQIGE-----IVSELLKRYSEKKIAVSIPSTRMDR--FGVEIAGRIASVRK--TGLTFAP 361

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA---TMD 352
           ++ + R+   +N+  +  +    ++  +       +   F++G PGET++D       ++
Sbjct: 362 EAATQRLRNIINKNISEEDIFATLEAAKKSGWR-RVKLYFMMGLPGETNEDLEEMVKLLE 420

Query: 353 LVDKIGY--AQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFND 407
            V ++G+    A    + P+  TP      Q+      E++  L++  R  ++S++D
Sbjct: 421 RVKRLGFKEVSASVSVFVPKPHTP-FQFARQISPEEAYEKIKTLKRAKRSARISYHD 476


>gi|190890095|ref|YP_001976637.1| Mg-protoporphyrin IX monomethyl ester oxidative cyclase subunit
           protein [Rhizobium etli CIAT 652]
 gi|190695374|gb|ACE89459.1| Mg-protoporphyrin IX monomethyl ester oxidative cyclase subunit
           protein [Rhizobium etli CIAT 652]
          Length = 509

 Score = 70.0 bits (170), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 54/306 (17%), Positives = 98/306 (32%), Gaps = 34/306 (11%)

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVV---GPQTYYRLPELLE-- 141
            R +  +  +    + +V  G        E+L  +   +++V   G +T  RL E L   
Sbjct: 82  ARAIAEAVKRSDPAIRIVYGGVFPTYHWREVLAETEAFDILVRGEGEETMRRLAEALAAN 141

Query: 142 ---RARFGKRVVDTDYSVEDKFERLSIVDGGYNR-------------KRGVTAFL-TIQE 184
               A  G    D D  ++      +I D    R               G  A +     
Sbjct: 142 RPLDAVAGIAYRDGDGEIQATRPAQAIADLDGYRIGWELIDHARYSYWGGKRAVVMQFSR 201

Query: 185 GCDKFCTFCVVPYTRGIEISRSLSQV-VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
           GC   C +C           RS      + AR   + GV  I L  +N  + R       
Sbjct: 202 GCPHLCNYCGQRGFWTRWRHRSPELFAREIARLYREQGVELINLADENPTSSR------- 254

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
           K   + L   ++E   +  +  T +        ++  +    V+     L +++  +  L
Sbjct: 255 KAWLAFLEAMIAENVPVQIVGSTRADDIVRDADILHLYRKAGVVR--WLLGMENTDEATL 312

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
             + +       R+ I  +R    DI   + ++VGF  E   D       +      Q  
Sbjct: 313 ALIKKGGAKTTDREAIRLLRQ--HDILSMATWVVGFEEEKLSDLWRGFRQLLSYDPDQIQ 370

Query: 364 SFKYSP 369
           +   +P
Sbjct: 371 ALYVTP 376


>gi|296120959|ref|YP_003628737.1| oxygen-independent coproporphyrinogen III oxidase [Planctomyces
           limnophilus DSM 3776]
 gi|296013299|gb|ADG66538.1| oxygen-independent coproporphyrinogen III oxidase [Planctomyces
           limnophilus DSM 3776]
          Length = 380

 Score = 70.0 bits (170), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 44/231 (19%), Positives = 85/231 (36%), Gaps = 19/231 (8%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVV--DEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
           C   C +C      G         ++    A    +    +  L+ Q V    G      
Sbjct: 20  CRHRCGYCDFTLVAGR------DDLIPRYLAALEREMQAHDQPLVVQTVFFGGGTPTHLP 73

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPR--DMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
                 LL  ++    L      +      DM++ +I            + L VQS  ++
Sbjct: 74  IVELEQLLKMVTRRFPLADGGEFSIEANPLDMTEEVIDVL--HSAGCNRVSLGVQSFQNK 131

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
            L+++ R H   E  +I+ RIR+  P++++  D I G PG+T  D+   ++     G   
Sbjct: 132 HLQTLERDHQGGEIPEIVQRIRARIPNVSL--DLIFGVPGQTLVDWEYDLEQALACGPTH 189

Query: 362 AFSFKYSPRLGTPGSNMLE-----QVDENVKAERLLCLQKKLREQQVSFND 407
             ++  +   GT  +         ++DE ++ E      K+L+E+     +
Sbjct: 190 LSTYGLTFEEGTAFTTRKRRGQLTEIDEALEREMYALAIKRLQEEGFEHYE 240


>gi|239907228|ref|YP_002953969.1| hypothetical protein DMR_25920 [Desulfovibrio magneticus RS-1]
 gi|239797094|dbj|BAH76083.1| hypothetical protein [Desulfovibrio magneticus RS-1]
          Length = 667

 Score = 70.0 bits (170), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 54/289 (18%), Positives = 101/289 (34%), Gaps = 30/289 (10%)

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG-EEILRRSPIVNVVV---GPQTYYRLPELL 140
           G+   L     K      +++ G +A +   EE+   SP  + ++   G     +   LL
Sbjct: 83  GQGVTLAAQVRKRHPRAKILIGGILASSLPTEELACYSP--DAILRGEGEALVPQALALL 140

Query: 141 ERARFG-------KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC 193
           +    G       ++ +D D       + L      +  K    A +    GC   C+FC
Sbjct: 141 DDTASGDVLELVQEQALDVDALAWPARDMLP-----WQLKMHAQASVAASRGCPYRCSFC 195

Query: 194 VVPYTRG--IEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFSDL 250
            +P          R +  VVDE R L     +     +  N            +     +
Sbjct: 196 SIPKAGPIRKWRPRDIDDVVDEMRFLYKTYNIAHFYFVDDNFILNSKPSFLRAERFAKLV 255

Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
              L  I+     R +    R     L+K        +  + L ++S S  +L   N++ 
Sbjct: 256 RDKLPCIRFGFMCRSSAIDKR-----LLKVLKSAG--LAGVFLGIESFSQAVLDRYNKKE 308

Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
           T  E+ + I  +  +   I I+  FI   P  +  + R T+ ++ +I +
Sbjct: 309 TVEEHIRAIAILNDL--GITINPGFIFFDPWTSASEMRQTISVMKEIDF 355


>gi|91204449|emb|CAJ70949.1| hypothetical protein kustb0204 [Candidatus Kuenenia
           stuttgartiensis]
          Length = 480

 Score = 70.0 bits (170), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 36/199 (18%), Positives = 67/199 (33%), Gaps = 18/199 (9%)

Query: 183 QEGCDKFCTFCVVPYT----RGIEISRSLSQVVDEARKLIDN--GVCEITLLGQNVNAWR 236
             GC   CT+C          G    R+   V+ E +++      +  IT    N  A +
Sbjct: 209 SRGCPYSCTYCSTFKALYSDSGYLRFRTAENVIGELKEMKFRFPRMQAITFCDDNFFALK 268

Query: 237 GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQ 296
              L+     + +      EI    R              ++     ++  M  L + +Q
Sbjct: 269 EDQLEKYAALYRN------EIGLPFRCLAHAHDVNKKKLEIL-----VNAGMNELQIGIQ 317

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
           +GS++  K   R  +  +    +  I   +  +    DFI+  P E ++D   T+ ++ K
Sbjct: 318 TGSEKTRKLYKRGPSTDKVLDAVGLIHQFKGRLMPFYDFIIDNPFEEEEDLIETLHMIQK 377

Query: 357 I-GYAQAFSFKYSPRLGTP 374
                    F      GT 
Sbjct: 378 FPRPYHLNVFSLIFLPGTE 396


>gi|304317098|ref|YP_003852243.1| radical SAM protein [Thermoanaerobacterium thermosaccharolyticum
           DSM 571]
 gi|302778600|gb|ADL69159.1| Radical SAM domain protein [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 559

 Score = 70.0 bits (170), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 57/352 (16%), Positives = 121/352 (34%), Gaps = 32/352 (9%)

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           + ++  L     K   +++VV+ G     + E +L ++  ++ VV  +      +LLER 
Sbjct: 66  IEKVLKLCEYIKKVREEIIVVLGGPEVSYDAENLL-KANYIDFVVLGEGELAFKKLLERI 124

Query: 144 RFGKRVVDTDYSVEDKFERLS-------------IVDGGYNRKRGVTAFLTIQEGCDKFC 190
              + + D D     K E +                            +     GC   C
Sbjct: 125 YNSRSMDDLDGIAYRKNEEIIVKIKTDYVNLDDIPFPYIDEEISDRLVYYETSRGCPFRC 184

Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDL 250
           ++C+           ++ +V  + R L   G   + L+         +  D       ++
Sbjct: 185 SYCL-SSLDNRLRYATIEKVKADLRTLSKMGAKIVKLID--------RSFDSNIKRAIEI 235

Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGD-LDVLMPYLHLPVQSGSDRILKSMNRR 309
           L  + E+KG         +P  ++   I +     D +     + +Q+ +   L  ++R 
Sbjct: 236 LNIIRELKGDTVFHCEV-NPELINKEFIDSLKGIEDRI--QFEVGIQTTNKSTLIKVSRN 292

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369
                    I  I  V   I +  D I G PG++      + + V K+   +        
Sbjct: 293 PDVESALNGIKLI--VDAGIKVHVDLIAGLPGDSFKSVANSFNDVYKLNPDEIQLGFLKL 350

Query: 370 RLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKH 421
             GT   ++ +  D+     R     + L+   +S+ +    + I  L++K+
Sbjct: 351 LKGT---DLRKNADKYFIEFRCDAPYEVLKTSTMSYYELHELKSIAFLVDKY 399


>gi|225619722|ref|YP_002720979.1| Fe-S oxidoreductase [Brachyspira hyodysenteriae WA1]
 gi|225214541|gb|ACN83275.1| Fe-S oxidoreductase [Brachyspira hyodysenteriae WA1]
          Length = 485

 Score = 70.0 bits (170), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 51/326 (15%), Positives = 110/326 (33%), Gaps = 39/326 (11%)

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            + +   + +    +  +++VV+AG    A  +E +    +  ++ G    + L  L+E 
Sbjct: 92  IIYKAWKIVDDLKTKYPNMIVVIAGDHVTAMPDETMNNCKVDYLLTGGDYDFLLFNLIE- 150

Query: 143 ARFGKRVVDTD--------------YSVEDKFERLSIVDGGY-----------NRKRGVT 177
              GK  ++                + +    + L  +D              N KR   
Sbjct: 151 YLNGKAQLEKGIYYRESNTIKNTGFFELRHDLKSLPFIDRDLTEWQRYAYDNGNFKRIPG 210

Query: 178 AFLTIQEGC-DKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR 236
            ++     C    CTFC          +R+   VVDE   L +     I  +  +   + 
Sbjct: 211 TYIMAGRDCWHHRCTFCSWTGIYTNFRARTAENVVDEVDFLYNK--YNIREIMDDTGCFP 268

Query: 237 GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQ 296
            K    + C +        ++     +R+      +    L+K          +L   ++
Sbjct: 269 VKKWLNDFCNYMIDKKLNKKVNIDCNMRFGA--CNEDEYRLMK-----KAGFRFLLFGLE 321

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
           S S   L  + + +   E              ++     ++G+P ET++D   T +L  K
Sbjct: 322 SASQNTLDRLIKGNKVEEILPSCKAASDA--GLSPHITVMLGYPWETEEDIEKTYELTKK 379

Query: 357 IGY-AQAFSFKYSPRLGTPGSNMLEQ 381
           +     A + + +  +  PG+ +  Q
Sbjct: 380 LLLKGYAKTMQATIIIPYPGTELFNQ 405


>gi|239616656|ref|YP_002939978.1| Radical SAM domain protein [Kosmotoga olearia TBF 19.5.1]
 gi|239505487|gb|ACR78974.1| Radical SAM domain protein [Kosmotoga olearia TBF 19.5.1]
          Length = 551

 Score = 70.0 bits (170), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 65/413 (15%), Positives = 130/413 (31%), Gaps = 53/413 (12%)

Query: 44  MEDMFFSQGYER----VNSMDDADL--------IVLNTCHIREKA--AEKVYSFLGRIRN 89
           +  + F  GYE     ++ +   +L        I++    I             L  I+ 
Sbjct: 29  LAGILFRAGYEVEYHTIDDVRKKELWEAFRGHQILVVHGGITTPGRYVGGNPVTLNDIKK 88

Query: 90  LKNSRIKEGGDLL-VVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
           L +   +    +   +  G   +   + +      V+ ++  +      + L     G R
Sbjct: 89  LLSGNKEPQKIICGPIALGYSLKGGTKAMNVELSEVDALLSHELQLA--DFLGLELKGSR 146

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGC---DKFCTFCVVPYTRGIEISR 205
                  + + +   + +   + R   V     I  GC   D +C+FC      G   SR
Sbjct: 147 Y----EILNELYPIGARIVPQHPRYPDVMIEFDISSGCERSDGYCSFCTESLLYGKFESR 202

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT---FSDLLYSLSEIKGLVR 262
            L  +  E R L D GV  +           G   D  K       +L    +EI     
Sbjct: 203 DLRGIERELRALKDVGVKALRFGRSANVVAYGYNRDVGKPDPEAVENLFRLATEILKPEV 262

Query: 263 LRYTTSHPR------DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           L     +P       + S  +++     D     +   V+S  + + +  N   +A +  
Sbjct: 263 LHIDNGNPIFIAQYPEESRKILETIARYDTPGDIISFGVESFDETVRRLNNLGGSAEDIL 322

Query: 317 QIIDRIRSV-------RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA------QAF 363
           + I+ +  +        P +    + + G PG + + F+     + KI Y       +  
Sbjct: 323 KAIEIVNEIGAFRVDGVPKLLPGINLLYGLPGHSKETFKIDRAYLKKI-YDNDWLIRRLN 381

Query: 364 SFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEV 416
             +     GTP   +  QV      +      K     +  F+   + ++  V
Sbjct: 382 IRQVMIFEGTP---LSHQVLPKFSKK---AFIKHKETIRKEFDTPMLKKVFPV 428


>gi|148262383|ref|YP_001229089.1| radical SAM domain-containing protein [Geobacter uraniireducens
           Rf4]
 gi|146395883|gb|ABQ24516.1| Radical SAM domain protein [Geobacter uraniireducens Rf4]
          Length = 842

 Score = 70.0 bits (170), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 48/265 (18%), Positives = 97/265 (36%), Gaps = 29/265 (10%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGK 238
           + +  GC + C FC   Y       R+  Q++ +  + + N G  E++LL  +       
Sbjct: 259 MEVARGCTRGCRFCQAGYIYRPVRERTPEQILAKIEETLRNTGYDEVSLLSLST------ 312

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD--MSDCLIKAHGDLDVLMPYLHLPVQ 296
              G+    + LL  L E     R+  +    R   ++  +++    +        L  +
Sbjct: 313 ---GDYGCLTPLLKELMERYAKERIAVSLPSLRVGSLTPEIVEEIKKVRK--TGFTLAPE 367

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
           +GS+R+ + +N+  T  +       + S    + I   F++G P ET DD     +L  +
Sbjct: 368 AGSERLRQVINKGITETDLLNTAFEVYSAGWRL-IKLYFMIGLPTETMDDVLGIAELAKQ 426

Query: 357 IGY----------AQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFN 406
           + +                 + P+  TP      Q+      E+   L  +L  ++   N
Sbjct: 427 VKFQGKRTGAGGEVNVAVSSFVPKPHTP-FQWEPQISYEEILEKQQFL--RLELKKRKLN 483

Query: 407 DACVGQIIEVLIEKHGKEKGKLVGR 431
                  + V+ E       + +GR
Sbjct: 484 FKWQDAPLSVM-EGVFARGDRRLGR 507


>gi|301064118|ref|ZP_07204565.1| radical SAM domain protein [delta proteobacterium NaphS2]
 gi|300441738|gb|EFK06056.1| radical SAM domain protein [delta proteobacterium NaphS2]
          Length = 498

 Score = 70.0 bits (170), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 35/260 (13%), Positives = 82/260 (31%), Gaps = 19/260 (7%)

Query: 123 IVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVD-----GGYNRKRGVT 177
           +V  + G  T   +P L  +   G         V+    +L I D      GY+     +
Sbjct: 135 LVRAISGEDTMSSIPSLSYKKNGGFIHNPKGDLVDLSRLKLPIRDKRRLTWGYHIMNHKS 194

Query: 178 AFLTIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR 236
             +    GC + C FC + +  G    S  L +++ +   +          +  +     
Sbjct: 195 EVMETSRGCTRNCNFCSIRHMYGRSFRSFPLERILADVDDIYFKRKARWIFVSDD----- 249

Query: 237 GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM--SDCLIKAHGDLDVLMPYLHLP 294
                 +      L  ++ +           +    +  ++ ++K           + L 
Sbjct: 250 --NFVLDPERVIALCDAIIKRGYRHLTFVVQADCATVAGNEEMVKKMALAG--FRSVFLG 305

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           +++ S + L++  + +     R+ +         I +    I GFP +   +       +
Sbjct: 306 MENASKKNLQAARKGNILDASRKAVRTCHKY--GIMVVGGMIFGFPDDGKKEIIENYRFL 363

Query: 355 DKIGYAQAFSFKYSPRLGTP 374
            + G   A+    +P   T 
Sbjct: 364 KQTGADTAYCQILTPYPKTE 383


>gi|45358152|ref|NP_987709.1| radical SAM domain-containing protein [Methanococcus maripaludis
           S2]
 gi|44920909|emb|CAF30145.1| conserved hypothetical protein [Methanococcus maripaludis S2]
          Length = 524

 Score = 70.0 bits (170), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 61/389 (15%), Positives = 136/389 (34%), Gaps = 52/389 (13%)

Query: 125 NVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGG----YNRKRGVTAFL 180
           +V+        L +LL+     ++   T     D+ +  + +       +     + A +
Sbjct: 142 DVISEGDLDAVLHDLLKNNFKPEKTDGTRLRTYDELDEFARIGAKIVKLHPNYPNIIAEI 201

Query: 181 TIQEGC----DKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR 236
               GC       C+FC  P   G    R+   +++E R L +NG+    +  Q      
Sbjct: 202 ETYRGCTRAFSGGCSFCTEPRRYGSPKFRNSRDIIEEVRNLYENGIKYFRIGRQPCMFSY 261

Query: 237 GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIK--AHGDLDV-------- 286
                 +  T    + ++ EI+ L     + S P  +             +         
Sbjct: 262 MAK---DVETTDVPVPNVLEIEKLFNGITSVSKPSVLHIDNANPSVIARHEKEGREIAKI 318

Query: 287 LMPY------LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV--------RPDIAIS 332
           L+ +          V+S  ++++          +  + ++ +  +         P +   
Sbjct: 319 LVRHCTSGNVAAFGVESFDEKVISKNCLLTEPEDVLKAVNILNEIGGKRGENGMPYLLPG 378

Query: 333 SDFIVGFPGETDDDFRATMDLVDKIGYA------QAFSFKYSPRLGTPGSNMLEQVDENV 386
            + + G  GE++D F    D + +I Y       +    +  P  GT  +  ++ V++  
Sbjct: 379 INLLSGLKGESNDTFEINYDYLKEI-YDSGNILRRINIRQVVPFFGTDIT--VKDVEKAR 435

Query: 387 KAERL-LCLQKKLR-EQQVSFNDACVGQII---EVLIEKHGKEKGKLVGR--SPWLQSVV 439
           K + L L  ++K+R E         +        V++E   ++     GR    +   + 
Sbjct: 436 KRKNLFLKFKEKIRTEIDNPMLKRMLPTETILKNVIVE-VKEKNDLYFGRQFGSYPILIG 494

Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
           +  KN  IG  + +R+T     ++ G++V
Sbjct: 495 VAEKNVEIGKFVDIRVTGYGRRSITGKIV 523


>gi|282164159|ref|YP_003356544.1| hypothetical protein MCP_1489 [Methanocella paludicola SANAE]
 gi|282156473|dbj|BAI61561.1| conserved hypothetical protein [Methanocella paludicola SANAE]
          Length = 603

 Score = 69.6 bits (169), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 50/287 (17%), Positives = 92/287 (32%), Gaps = 44/287 (15%)

Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSLS 208
           +D  Y +                 R V   +T   GC   C FC +   +G  + SRS+ 
Sbjct: 273 LDHVYGLPYTRRPHPSYKEEIPGLRTVRFSITSHRGCFGGCAFCAITNHQGRIVQSRSIE 332

Query: 209 QVVDEARKLIDNGVCEITLLG----------------------QNVNAWR---GKGLDGE 243
            +V+E +KL+     + T+                        Q+           L  +
Sbjct: 333 SIVEEVKKLVKMPEFKGTITDIGGPTADMYMLGCEKQSKYGACQDKLCLYPKACPSLKRD 392

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRD--MSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
                 LL ++  + G+  +   +    D  M D     H     +   L +  +  S  
Sbjct: 393 HGDLIKLLKAVESVPGVKNVFIGSGIRYDLAMQDEDYLYHICEHNVSGQLKVAPEHVSKA 452

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIA----ISSDFIVGFPGETDDDFRATMDLVDKI 357
           +  +M +  +   Y + + R + +  ++     I   FI G PG T +D     + V  +
Sbjct: 453 VTDAMCKP-SIEMYERFVKRYKEINRELGKEQYIIPYFISGHPGCTLNDAVQLAEYVRDM 511

Query: 358 GYAQAFSFKYSPRLGTPGSNMLEQ-----------VDENVKAERLLC 393
           GY       ++P   T  + M              V  +V   R+  
Sbjct: 512 GYYVEQVQDFTPTPSTLSTCMYYTGYNPYTEKEVYVPRSVDERRMQR 558


>gi|254413106|ref|ZP_05026878.1| radical SAM domain protein [Microcoleus chthonoplastes PCC 7420]
 gi|196180270|gb|EDX75262.1| radical SAM domain protein [Microcoleus chthonoplastes PCC 7420]
          Length = 478

 Score = 69.6 bits (169), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 58/344 (16%), Positives = 111/344 (32%), Gaps = 39/344 (11%)

Query: 58  SMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEI 117
             D ADL++++   +++     +   +   +    +    G     V          E  
Sbjct: 13  DWDWADLVIVSGMIVQKP---DLLHIIREAKQRGKTVAAGGPYFTSV---------PETA 60

Query: 118 LRRSPIVNVVVGPQTYYRLPELLERARFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRG 175
           L+    V+ ++  +    LP+ +E    G+   V+ +D    D            N    
Sbjct: 61  LQA--GVDFLILDEGEITLPKFVEALERGETSGVLRSDGEKPDVTNTPIPRYDLLNLSDY 118

Query: 176 VTAFLTIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVCEITLLGQNVNA 234
               +    GC   C FC +    G +  ++S  Q++ E ++L D G      L  +   
Sbjct: 119 SDMSVQFSRGCPFQCEFCDIIVLYGRKPRTKSPEQLLAELQRLYDLGWRRSIFLVDD--- 175

Query: 235 WRGKGLDGEKCTFSDLLYS----LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY 290
                  G K     LL      ++E     RL    S        L+     +      
Sbjct: 176 ----NFIGNKRNVKLLLREMGPWMAERGYPFRLSTEASVDLAQDQELLNLM--IAANFTG 229

Query: 291 LHLPVQSGSDRILKSMNRR-HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           + L +++     L    +  +T     + +  I      + + + FI+GF GE       
Sbjct: 230 VFLGIETPDTESLSLTQKFQNTRNSLMEAVQTINKT--GLRVMAGFIIGFDGEKPGAGDR 287

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLC 393
            ++ V+     QA          T   + L+      + ERLL 
Sbjct: 288 IIEFVEATAIPQAMVSMLQALPNTALWHRLK------REERLLE 325


>gi|148380588|ref|YP_001255129.1| putative B12-binding Fe-S oxidoreductase [Clostridium botulinum A
           str. ATCC 3502]
 gi|153932321|ref|YP_001384875.1| putative B12-binding Fe-S oxidoreductase [Clostridium botulinum A
           str. ATCC 19397]
 gi|153937563|ref|YP_001388345.1| putative B12-binding Fe-S oxidoreductase [Clostridium botulinum A
           str. Hall]
 gi|148290072|emb|CAL84191.1| radical SAM superfamily protein [Clostridium botulinum A str. ATCC
           3502]
 gi|152928365|gb|ABS33865.1| putative cobalamin-dependent enzyme [Clostridium botulinum A str.
           ATCC 19397]
 gi|152933477|gb|ABS38976.1| putative cobalamin-dependent enzyme [Clostridium botulinum A str.
           Hall]
          Length = 559

 Score = 69.6 bits (169), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 53/328 (16%), Positives = 114/328 (34%), Gaps = 39/328 (11%)

Query: 60  DDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILR 119
           + ADL+   +C+I           L  +  L N          +V  G     + E  LR
Sbjct: 54  EKADLVAF-SCYIWN---------LEYVEELANLIKLVKPSTEIVFGGPEVSYDSESFLR 103

Query: 120 RSPIVNVVVGPQTYYRLPEL--------LERAR--FGKRVVDTDYSVEDKFERLSIVDGG 169
           + P   V+ G         +        ++R +  + K +   +Y+ E     +  V   
Sbjct: 104 KVPGEYVIEGEGEETFREFIKCKIENKSVDRVKGLYSKTLNGIEYTGERHNISMDSVVFP 163

Query: 170 YNRKRGV---TAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEIT 226
           Y  +  +     +     GC   C +C+     G      + +V  E + L+D  V  I 
Sbjct: 164 YKEEEDLKNKIVYYEASRGCPFKCKYCLSSTLHG-VRFHDIERVKKEIKFLVDKNVKLIK 222

Query: 227 LLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV 286
            + +  N      +   +   +    +           +       ++   ++       
Sbjct: 223 FVDRTFNCNHKFAMRIWEYILNLDTDA---------TFHFEISADLLTKEELEILSKGKE 273

Query: 287 LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDD 346
                 + VQ+ ++ +LK++NR       ++ ++ +++++ +I    D I G PGE  + 
Sbjct: 274 GRIQFEVGVQTTNNEVLKNINRHVNFETIKEKVEELKNLK-NIKQHLDLIAGLPGEDYNS 332

Query: 347 FRATMDLV-----DKIGYAQAFSFKYSP 369
           F+ + + V     ++I        K SP
Sbjct: 333 FKNSFNDVYSIEPEEIQLGFLKLLKGSP 360


>gi|39936809|ref|NP_949085.1| radical SAM family protein [Rhodopseudomonas palustris CGA009]
 gi|39650666|emb|CAE29189.1| Elongator protein 3/MiaB/NifB [Rhodopseudomonas palustris CGA009]
          Length = 527

 Score = 69.6 bits (169), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 49/331 (14%), Positives = 107/331 (32%), Gaps = 40/331 (12%)

Query: 56  VNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGE 115
            +    AD + ++  HI      +  + + R             DL V + G    A  +
Sbjct: 70  ADDFAWADAVFVSGMHI----QRQQMNDICR--------RAHDFDLPVALGGPSVSACPD 117

Query: 116 EILRRSPIVNVVVGPQTYYRLPELLER-----ARFGKRVVDTDYSVEDKFERLSIVDGGY 170
                 P  + +   +      +L+ +      R  ++VV T     D            
Sbjct: 118 ----YYPNFDYLHVGELGDATDQLIAKLTHDVTRPKRQVVFTTEDRLDMTLFPIPAYELA 173

Query: 171 NRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVC-EITLL 228
              + +   +    GC   C FC +P   G     ++  Q++ E  ++I+ G+   +  +
Sbjct: 174 ECSKYLLGSIQYSSGCPYQCEFCDIPGLYGRNPRLKTPEQIITELDRMIECGIRGSVYFV 233

Query: 229 GQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMS----DCLIKAHGDL 284
             N          G +    DLL  L E +     +   +    ++      +++   + 
Sbjct: 234 DDNFI--------GNRKAALDLLPHLVEWQKRTGFQLQLACEATLNIAKRPEILELMRE- 284

Query: 285 DVLMPYLHLPVQSGSDRILKSMNRRHTAY-EYRQIIDRIRSVRPDIAISSDFIVGFPGET 343
                 + + +++     LK+M++ H       + +  I S    I + S  I+G   +T
Sbjct: 285 -AYFCTIFVGIETPDPTALKAMHKDHNMMVPILEGVRTISSY--GIEVVSGIILGLDTDT 341

Query: 344 DDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
            +     M  +++                TP
Sbjct: 342 PETGEFLMQFIEQSQIPLLTINLLQALPKTP 372


>gi|297160564|gb|ADI10276.1| coproporphyrinogen III oxidase [Streptomyces bingchenggensis BCW-1]
          Length = 410

 Score = 69.6 bits (169), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 54/280 (19%), Positives = 97/280 (34%), Gaps = 36/280 (12%)

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV-PYTRGIEI------ 203
           D +   ED    +S V G  NR  G    +     C   C +C    YT           
Sbjct: 7   DGEPMPEDGALPVSAVAGAANRPLGFYLHVPY---CATRCGYCDFNTYTATELRGSGGVL 63

Query: 204 -SRS--LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            SR      VV+E R           +LG +        + G   T       L  + G 
Sbjct: 64  ASRDNYADMVVEEVRLARK-------VLGDDPRPVETVFVGGGTPTL-LAAADLGRMLGA 115

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPY--------LHLPVQSGSDRILKSMNRRHTA 312
           +R  +  +   +++             +          +   +QS    +L+ ++R HT 
Sbjct: 116 IRDEFGLAEGAEVTTE-ANPESVDPRYLEQLRAAGFNRVSFGMQSARQHVLRVLDRTHTP 174

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
                 +   R+   D  ++ D I G PGE+D+D+RA+++     G     ++      G
Sbjct: 175 GRPEACVAEARAAGFD-HVNLDLIYGTPGESDEDWRASLEAALGAGPDHVSAYALIVEEG 233

Query: 373 TPGSN--MLEQVD---ENVKAERLLCLQKKLREQQVSFND 407
           T  +      +V    ++V A+R L  ++ L      + +
Sbjct: 234 TQLARRIRRGEVPMTDDDVHADRYLIAEEMLSAAGFRWYE 273


>gi|94265913|ref|ZP_01289640.1| Cobalamin B12-binding:Radical SAM [delta proteobacterium MLMS-1]
 gi|93453537|gb|EAT03942.1| Cobalamin B12-binding:Radical SAM [delta proteobacterium MLMS-1]
          Length = 431

 Score = 69.6 bits (169), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 62/319 (19%), Positives = 101/319 (31%), Gaps = 47/319 (14%)

Query: 92  NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVD 151
            +++K  G   VVV G  A             V+ +          EL+E    G++  D
Sbjct: 88  AAKVKAAGVRSVVVGGIHASILPA--FFNHEEVDYICIGLGKLSFRELVEALEQGRQPAD 145

Query: 152 T-----------------DYSVEDKFERLSIV---------DGGYNRKRGVTAFLTIQEG 185
                             DY   D                      R +    F+    G
Sbjct: 146 IPGIAKTSPGKQLQWLNRDYREADLVSHRPPAYQLVAGYREHYRLERLKVNMGFVASAAG 205

Query: 186 CDKFCTFCVVP-YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK 244
           C   C+FC +   + G  ++R    V+ +   L D  +  I L+  N          G  
Sbjct: 206 CPHRCSFCCIKGQSGGRYLTRPPEHVIRDIELLAD--IPVIRLIDANTL--------GNL 255

Query: 245 CTFSDLLYSLSEIKGLVRLRYTT--SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
               +L  +L    GL +       S        L +   +    +  L +  +   DR 
Sbjct: 256 EQARELGEALRS-AGLNKQFLADVRSDTVVNHPELFQLWREAG--LRALIIGFEELDDRR 312

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           L +MN+ + A   R  +  ++ +   I I  DFIV  PG  ++DFR   D +        
Sbjct: 313 LTAMNKANRAAINRAAVGILQDL--GITIVGDFIVS-PGYQEEDFRRLGDYLASSQIDLP 369

Query: 363 FSFKYSPRLGTPGSNMLEQ 381
                +P  GT      +Q
Sbjct: 370 IITVLTPLPGTDYHRHRQQ 388


>gi|23016734|ref|ZP_00056487.1| COG1032: Fe-S oxidoreductase [Magnetospirillum magnetotacticum
           MS-1]
          Length = 448

 Score = 69.6 bits (169), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 51/322 (15%), Positives = 96/322 (29%), Gaps = 30/322 (9%)

Query: 72  IREKA---AEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVV 128
           + E A    E     +G I        +       ++ G +    GE +L  +P +   V
Sbjct: 106 VIESASPSWEHDKGVIGEIA-------RRLPHTRFIITGPITS-HGEALLDEAPNIQATV 157

Query: 129 GPQTYYRLPELLERA--------RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFL 180
             +    + + L  A             +    +   D        D     ++   A +
Sbjct: 158 RGEYEKGVIKALNGANGVVDFDLLTVAEMNSAPFPYFDSVIAHRYCDTNPRGQQFPHAQV 217

Query: 181 TIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLG--QNVNAWRGK 238
               GC   C FCV P T     S           +       E  L    Q        
Sbjct: 218 LSSRGCPYKCIFCVWPATMT---SNDPDGGGKRIVRQYGADYMEAFLTELVQKYGFRSIY 274

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMS-DCLIKAHGDLDVLMPYLHLPVQS 297
             D         +  +  +   V + ++     D S   L +   D       + +  +S
Sbjct: 275 FDDDTFNLGDRHVEKMCAVMRKVGVPWSAMCRADTSSFHLWQEMKDSG--CFGVKIGFES 332

Query: 298 GSDRILK-SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
           G+  ++   +N+R    E R++   I+ V   + +   F  G PGET +  + T + +  
Sbjct: 333 GNQEVVDNIVNKRLDLEEARKVAFEIKRV--GMTLHGTFTFGLPGETPEQMQDTENYMAT 390

Query: 357 IGYAQAFSFKYSPRLGTPGSNM 378
           +          +   G P   +
Sbjct: 391 LPLDSCQKSGCAEIEGAPLHTL 412


>gi|300727903|ref|ZP_07061281.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Prevotella bryantii B14]
 gi|299774745|gb|EFI71359.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Prevotella bryantii B14]
          Length = 386

 Score = 69.6 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 50/242 (20%), Positives = 85/242 (35%), Gaps = 31/242 (12%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW---RGKGLDG 242
           C   C +C          S +LSQ+    +K  D    E+ L  QN++           G
Sbjct: 11  CASRCIYC-------GFYSTTLSQLK---QKYTDAICREMELRKQNIDKRPIEISTIYFG 60

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL------------MPY 290
                      L +I   +   +  +      +C I    + D +            +  
Sbjct: 61  GGTPSQLSKEQLQQIFSSINSIWNCNGSIIRKNCEITFECNPDDITEDFANFIAYLGVNR 120

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
           + +  Q+     LK ++RRH A E +  +DR++S   D  IS D + GFPGET  ++   
Sbjct: 121 VSMGAQTFDPARLKFLHRRHNANEVKLAVDRLKSAGFD-NISIDLMFGFPGETLTEWEED 179

Query: 351 MDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ-----VDENVKAERLLCLQKKLREQQVSF 405
           +     +      ++      GTP   MLE+     +DE         L   L +     
Sbjct: 180 IKTAVSLEPKHISAYSLMYEEGTPLYRMLEKGEIEEIDEETSLAMYKKLIDLLTQAGYEH 239

Query: 406 ND 407
            +
Sbjct: 240 YE 241


>gi|284161603|ref|YP_003400226.1| radical SAM protein [Archaeoglobus profundus DSM 5631]
 gi|284011600|gb|ADB57553.1| Radical SAM domain protein [Archaeoglobus profundus DSM 5631]
          Length = 481

 Score = 69.6 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 58/294 (19%), Positives = 111/294 (37%), Gaps = 34/294 (11%)

Query: 127 VVGPQTYYRLPELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTA------- 178
           V+G     R+ +++  AR  + +  +  +  E K +R+      +  +R + A       
Sbjct: 123 VIGEVENSRVLDVIAEARSVEDLECEGVWLKEGKVKRIYPKRLDFYLRRQIIADNVFGRC 182

Query: 179 -FLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG 237
             L I  GC + C FCVV         R L  ++D A       V +I L+  +      
Sbjct: 183 LILEIGRGCIRRCRFCVVRQIYSPPRWRDLKLLIDTAEDY-KGVVDKICLVAPST----- 236

Query: 238 KGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQS 297
                +     +L+  L E+  LV    T +   D     +   G L      L +  + 
Sbjct: 237 ----LDHPRAKELIARLIEMGFLVSPSSTRADKLDEETVELLVKGGL----RSLTIAPEV 288

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
           GSD++   +N+  +       ++  +    + +    F++G P E+ +D +  + LV+KI
Sbjct: 289 GSDKLRDILNKGLSEEHILNAVEIGKEKGIN-SFKLYFMIGLPNESFEDVKEIVRLVEKI 347

Query: 358 GY----AQAFSFKYSPRLGTP----GSNMLEQVDE--NVKAERLLCLQKKLREQ 401
                        + P+  TP        +E+V++       R   L K+L + 
Sbjct: 348 KSLKVEVSVSINPFVPKPHTPLQWCSYTGIERVEDGLKEIKRRREYLIKELSKI 401


>gi|192292635|ref|YP_001993240.1| radical SAM domain protein [Rhodopseudomonas palustris TIE-1]
 gi|192286384|gb|ACF02765.1| Radical SAM domain protein [Rhodopseudomonas palustris TIE-1]
          Length = 527

 Score = 69.6 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 49/331 (14%), Positives = 107/331 (32%), Gaps = 40/331 (12%)

Query: 56  VNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGE 115
            +    AD + ++  HI      +  + + R             DL V + G    A  +
Sbjct: 70  ADDFAWADAVFVSGMHI----QRQQMNDICR--------RAHDFDLPVALGGPSVSACPD 117

Query: 116 EILRRSPIVNVVVGPQTYYRLPELLER-----ARFGKRVVDTDYSVEDKFERLSIVDGGY 170
                 P  + +   +      +L+ +      R  ++VV T     D            
Sbjct: 118 ----YYPNFDYLHVGELGDATDQLIAKLTHDVTRPKRQVVFTTEDRLDMTLFPIPAYELA 173

Query: 171 NRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVC-EITLL 228
              + +   +    GC   C FC +P   G     ++  Q++ E  ++I+ G+   +  +
Sbjct: 174 ECSKYLLGSIQYSSGCPYQCEFCDIPGLYGRNPRLKTPEQIITELDRMIECGIRGSVYFV 233

Query: 229 GQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMS----DCLIKAHGDL 284
             N          G +    DLL  L E +     +   +    ++      +++   + 
Sbjct: 234 DDNFI--------GNRKAALDLLPHLVEWQKRTGFQLQLACEATLNIAKRPEILELMRE- 284

Query: 285 DVLMPYLHLPVQSGSDRILKSMNRRHTAY-EYRQIIDRIRSVRPDIAISSDFIVGFPGET 343
                 + + +++     LK+M++ H       + +  I S    I + S  I+G   +T
Sbjct: 285 -AYFCTIFVGIETPDPTALKAMHKDHNMMVPILEGVRTISSY--GIEVVSGIILGLDTDT 341

Query: 344 DDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
            +     M  +++                TP
Sbjct: 342 PETGEFLMQFIEQSQIPLLTINLLQALPKTP 372


>gi|23016883|ref|ZP_00056635.1| COG1032: Fe-S oxidoreductase [Magnetospirillum magnetotacticum
           MS-1]
          Length = 470

 Score = 69.6 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 54/326 (16%), Positives = 121/326 (37%), Gaps = 42/326 (12%)

Query: 81  YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140
              L    +      +   D +VV  G +  +  E ++       V+ G       P  +
Sbjct: 73  NFHLDHAEHYARLIKEHSPDSIVVYGGSLPSSVPELLVENCECDFVIHGEGEV-VFPAFV 131

Query: 141 ERARFGK---------------RVVDTDYSVEDKFERLSI---------VDGGYNRKRGV 176
           +  R G+               +VV T      + + LS             GY ++ G+
Sbjct: 132 KALREGESFPEGPGIFYKGADGQVVGTKAKRMRRLDHLSRQNYSLFDMDFYSGYFKEVGL 191

Query: 177 TAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAW 235
           +  +    GC   C+FC   +       R + +V+DE + +++N G+ +   + +N    
Sbjct: 192 SWEIMASRGCKAHCSFC-YKFMGDGIGLREVGEVLDEIQYIMENYGITKFYFVDENFMQI 250

Query: 236 RGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPV 295
           +         +F +   +    +GL      +S   ++ +  I    +  +    L   V
Sbjct: 251 KKYF-----YSFLEEKKN----RGLNFTFIASSRIDEIDEERISIAKEHGLTA--LTTGV 299

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
           +S +   L ++++R    +  + +  +R     I    + I+GF  E++DD++A ++ ++
Sbjct: 300 ESVNQATLNAIDKRIDIEDAERAVKLLRQY--GIRPHVNLIIGFEWESEDDYKAMLEFIE 357

Query: 356 KIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +       + K S     P + + E 
Sbjct: 358 RN--DLRGTVKLSYLTPLPATRLYED 381


>gi|69954026|gb|AAZ04347.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Thermotoga sp. RQ2]
          Length = 374

 Score = 69.6 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 38/228 (16%), Positives = 77/228 (33%), Gaps = 12/228 (5%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C K C +C          S    + +    + I+     +         + G        
Sbjct: 12  CKKKCXYCDFYSVA----SEDFEEYLSLVFEEIELYRDVLKESEIETVYFGGGTPSLVPP 67

Query: 246 TFSD-LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304
           +F + +L  L E+        TT      S    K      + +  + L VQS  D +LK
Sbjct: 68  SFLEKILEKLKEVSKKFSPLETTIEVNPESVDREKLRSYRKMGINRISLGVQSCDDGVLK 127

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
              R +     ++  + + +   ++    DFI+G PGETD+     +  +++        
Sbjct: 128 KCGRLYDEKMLKEKAELVLAEFDNVNF--DFILGLPGETDETLEKNLHFLEEFTPQHVSL 185

Query: 365 FKYSPRLGTPGSNMLEQ-----VDENVKAERLLCLQKKLREQQVSFND 407
           +       TP  ++L++      D +    R     + L+ +     +
Sbjct: 186 YFLEVDENTPLYSLLKKNLLTLPDSDEVERRHDVFVEFLKSRGFERYE 233


>gi|193212165|ref|YP_001998118.1| radical SAM domain-containing protein [Chlorobaculum parvum NCIB
           8327]
 gi|193085642|gb|ACF10918.1| Radical SAM domain protein [Chlorobaculum parvum NCIB 8327]
          Length = 602

 Score = 69.6 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 56/305 (18%), Positives = 99/305 (32%), Gaps = 36/305 (11%)

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER-------- 142
           K +RI +   + VV+ G    A  E++L     V++VV  +      EL+E+        
Sbjct: 85  KLARIAKKHGVTVVMGGFHPTALPEKVLD-LGCVDLVVVGEGEATFRELVEKGPSRDVKG 143

Query: 143 ---------ARFG-KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTF 192
                       G + ++    S+      L     G          +    GC   C+F
Sbjct: 144 LCWKENGAFVHTGIRELIKDVDSIRFPLRSLRPKRFGEKSSDYTIDTIYTSRGCPWVCSF 203

Query: 193 CVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLY 252
           C           RS   VV+E  +L D    ++  +            D    T    + 
Sbjct: 204 CANDKMHKHWRGRSAENVVEEIAQLHDRKKKKLLKI-----------WDANFLTNIRRVE 252

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMP----YLHLPVQSGSDRILKSMNR 308
            + ++     L          +  +I+A   L  L       + L ++S + + L  MN+
Sbjct: 253 RICDLMIERGLTNFRIVTETRAKDVIRAERILPKLRKIGLSKVGLGIESPNPKTLALMNK 312

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
            ++  E    I  +      +     FIVG   E+ +D          +G  Q      +
Sbjct: 313 ENSLDEVTTAIKLLNQY--GVGSEGYFIVGHYSESVEDTMPYPKFARALGLRQTLFMAMT 370

Query: 369 PRLGT 373
           P  GT
Sbjct: 371 PYPGT 375


>gi|222081967|ref|YP_002541332.1| hypothetical protein Arad_8470 [Agrobacterium radiobacter K84]
 gi|221726646|gb|ACM29735.1| conserved hypothetical protein [Agrobacterium radiobacter K84]
          Length = 519

 Score = 69.6 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 45/312 (14%), Positives = 96/312 (30%), Gaps = 30/312 (9%)

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             + R R  +           +VV G     + +       +++V    +     P+ L 
Sbjct: 75  MIVQRFRMTEILTALRARHCFIVVGGPWVTVKED---YFDGLIDVKFIGEAEETWPQFLL 131

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGY-NRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
             + G      + S +     + +               +    GC   C FC +    G
Sbjct: 132 EWKEGHHAERYEQSGKTDMSTVPVPRFDLLKMDDYAVGSIQFSRGCPFTCDFCDIIVVFG 191

Query: 201 IE-ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
            +   ++  Q++ E   L+  G+    ++  N+         G K    ++L  +   + 
Sbjct: 192 RKPRIKTSVQIIAEIEALLAVGMDTAFIVDDNLI--------GNKKAIKEVLREVVAWQ- 242

Query: 260 LVRLRYTTSHPRDMSDCL--------IKAHGDLDVLMPYLHLPVQSG--SDRILKSMNRR 309
             R  Y  +   + S  L        +    ++ V+   +  P +      + L+++ + 
Sbjct: 243 -ERHHYPMTFLTEASIDLADDAELMQLMVDANIRVVFVGIETPNEEALRETKKLQNLRKG 301

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369
            T       I  I+     + +    I+GF  +    F A    +       A     + 
Sbjct: 302 GT---MLDKIHAIQQT--GMEVWCGMILGFDSDDATIFEAQRVFIKDARIVNAMIGMLAA 356

Query: 370 RLGTPGSNMLEQ 381
              TP    LEQ
Sbjct: 357 IPKTPLYTRLEQ 368


>gi|159030904|emb|CAO88585.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 526

 Score = 69.6 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 48/308 (15%), Positives = 99/308 (32%), Gaps = 28/308 (9%)

Query: 72  IREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSP---IVNVVV 128
           +      +++   G IR       K   +  V+V G       E++  + P   IV+V  
Sbjct: 115 VTTAYYGELWRNQGLIRRGLQRARKYHPEARVIVGGGAVSVFYEQLKTKLPTGTIVSVGE 174

Query: 129 GP-----------QTYYRLPELLERARFGKRVVDTDYSVE------DKFERLSIVDGGYN 171
           G             +  R   + E     + + ++   +E      D    +      Y 
Sbjct: 175 GETLLEKFLSGRDFSDERCYVVGETTPRPRLIHESPTPLEKSACNYDYIAGIWPEFSYYF 234

Query: 172 RKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR-SLSQVVDEARKLIDNGVCEITLLGQ 230
           ++      +  + GC   C +C+     G ++      +VV E R+L D G+        
Sbjct: 235 QENDFYIGVQTKRGCPHNCCYCIYTVVEGKQVRINPADEVVKEIRQLYDRGIRNFWFTDA 294

Query: 231 NVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY 290
                R    D E     +LL  +                 +++  L          M Y
Sbjct: 295 QFIPARKFINDVE-----ELLEKILAAGMKDIHWAAYIRADNLTPKLCDLMVKTG--MNY 347

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
             + + SGS  +++ M   +      Q    +++   +  +S ++      ET +  R T
Sbjct: 348 FEIGITSGSQELVRKMRMGYNLRTVLQNCRDLKAAGFNDLVSVNYSFNVIDETLETIRQT 407

Query: 351 MDLVDKIG 358
           +    ++ 
Sbjct: 408 IAYHRELE 415


>gi|159899698|ref|YP_001545945.1| radical SAM domain-containing protein [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|159892737|gb|ABX05817.1| Radical SAM domain protein [Herpetosiphon aurantiacus ATCC 23779]
          Length = 646

 Score = 69.6 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 57/322 (17%), Positives = 102/322 (31%), Gaps = 48/322 (14%)

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R  +L +   +   +L+VVV G   Q      + + P V+V V  +      ELL     
Sbjct: 83  RSLHLASQLKQALPNLIVVVGGPEVQRN-NTWVLQHPAVDVAVEGEGEQTFSELLLALEH 141

Query: 146 GKRVVDTDYS-------------------------VEDKFERLSIVDGGY-----NRKRG 175
             + +                                     L  +   Y       + G
Sbjct: 142 QHQQISLPMHNQTQLPYPLVAGTLQYHASQLHAGLPRPAMGSLDPIPSPYLLGFLELRAG 201

Query: 176 VTAFLTIQEGCDKFCTFCVV-PYTRGIEISRSLSQ--VVDEARKLIDNGVCEITLLGQNV 232
             AF+     C   CTFC+           R      V+DE       G   I  +  N+
Sbjct: 202 EIAFIECSRWCPYGCTFCLYGRNMGTKLGGRMFGSQRVLDEVAWARQQGARAIHFVEANL 261

Query: 233 NAWRGKGLDGEKCTFSDLLYSLSEI-KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL 291
           N             F +L+  L  I +      Y       +    ++A     + +   
Sbjct: 262 NLL---------PNFRELMRGLQSINQPEPTPIYAELRGEHLKPESVEALVQAGLTV--A 310

Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351
            + +QS +   L+++ RR    ++ +   R+   + D+A+  D I+G P +  D   AT+
Sbjct: 311 EVGLQSANRTALQAVGRRTDLEKWAEGTRRL--YQHDVAVLLDVILGLPEDDADSTHATI 368

Query: 352 DLVDKIGYAQAFSFKYSPRLGT 373
           + + +        F      GT
Sbjct: 369 EWIQQQQLGDYDIFTLQVLPGT 390


>gi|153871701|ref|ZP_02000807.1| Mg-protoporphyrin IX monomethyl ester oxidative cyclase subunit
           protein [Beggiatoa sp. PS]
 gi|152071834|gb|EDN69194.1| Mg-protoporphyrin IX monomethyl ester oxidative cyclase subunit
           protein [Beggiatoa sp. PS]
          Length = 498

 Score = 69.6 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 49/334 (14%), Positives = 114/334 (34%), Gaps = 39/334 (11%)

Query: 44  MEDMFFSQG-----YERVNSMDDAD-LIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKE 97
           +  +  + G     Y++ + + D++ + ++N   I       + S   +  ++     K 
Sbjct: 71  LASVLSNDGHTVSYYQKDDYISDSNFIYLVNNSDIIGIT--TMNSTWLQANDIVRFSKKA 128

Query: 98  GGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA-------------- 143
              ++ V+ G  A       L+ +P++++V   +      +L                  
Sbjct: 129 NSKIITVIGGPEATYTSRSPLKDNPLLDLVCRGEGEEAFIDLAREPNSIENIRSIGCFDF 188

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           R G+ +V    + +     L          + +  +L    GC   C FC      G E 
Sbjct: 189 RDGENIVIGKLAKQVDITSLPPPRYDLINDKKLRVYLQFTRGCASACAFCA---ENGKER 245

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
            ++L Q+  E ++L       +  +                    D   ++ E       
Sbjct: 246 HKTLEQIAVELQELEKIRNKSVVFIAD-------SDFYSSPTKVGDFYAAVKE-SKTSNY 297

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
               +   D+++ L     D  ++  +  L V++ SD++L  + +  +       +  +R
Sbjct: 298 FAVQARISDITEQLESKSIDNHIVFKF--LGVENLSDKVLAKVRKGFSWNTIYDKLRLLR 355

Query: 324 SVRPDI-AISSDFIVGFPGETDDDFRATMDLVDK 356
               ++     +FI G PGE   DF      +++
Sbjct: 356 KYYGEVPRYRMNFIQGLPGE---DFNEAQANLER 386


>gi|282899022|ref|ZP_06307004.1| Radical SAM [Cylindrospermopsis raciborskii CS-505]
 gi|281196162|gb|EFA71077.1| Radical SAM [Cylindrospermopsis raciborskii CS-505]
          Length = 531

 Score = 69.6 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 48/305 (15%), Positives = 103/305 (33%), Gaps = 36/305 (11%)

Query: 79  KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVV---------- 128
           +++  LG IR       K       VV G       E++ +  P   +V           
Sbjct: 125 ELWRNLGLIRGGMKRAKKYQAQARAVVGGGAVSVFYEQLGKSLPKGTIVSVGEGETLLTK 184

Query: 129 ---GPQTYYRLPELLERARFGKRVVDTDYSVEDK-------FERLSIVDGGYNRKRGVTA 178
              G +       ++ +    +R++    +  +K        E +      Y + +    
Sbjct: 185 YLKGEEFRDERCYVVGQNAPRQRLIHEQPTPLEKTACNYDYIETIWPEFNYYLQDKDFYI 244

Query: 179 FLTIQEGCDKFCTFCVVPYTRGIEISR-SLSQVVDEARKLIDNGVCEITLL-GQNVNAWR 236
            +  + GC   C +CV     G ++      +VV E R+L + GV        Q + A +
Sbjct: 245 GVQTKRGCPHNCCYCVYTVVEGKQVRINPADEVVAEIRQLYERGVRNFWFTDAQFIPARK 304

Query: 237 GKGLDGEKCTFSDLLYSLSEI--KGLVRLRY-TTSHPRDMSDCLIKAHGDLDVLMPYLHL 293
                       D +  L +I   G+  + +       +++  L +        M Y  +
Sbjct: 305 YID---------DAIELLGKIVDSGMTDIHWAAYIRADNLTPELCQLMAKTG--MNYFEI 353

Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
            + SGS  +++ M   +      Q    ++S   +  +S ++      E+ +  R T+  
Sbjct: 354 GITSGSQELVRKMRMGYNLRTVLQNCRDLKSAGFNDLVSVNYSFNVIDESFETIRQTIAY 413

Query: 354 VDKIG 358
             ++ 
Sbjct: 414 HRELE 418


>gi|300871706|ref|YP_003786579.1| Fe-S-oxidoreductase [Brachyspira pilosicoli 95/1000]
 gi|300689407|gb|ADK32078.1| Fe-S-oxidoreductase [Brachyspira pilosicoli 95/1000]
          Length = 485

 Score = 69.6 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 51/324 (15%), Positives = 109/324 (33%), Gaps = 37/324 (11%)

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE-- 141
           + +   + +    +  +++VV+AG    A  +E +    +  ++ G    + L  L+E  
Sbjct: 93  IYKAWKIVDDLKAKYKNMIVVIAGDHVTAMPDETMNNCKVDYLLTGGDYDFLLLNLIEYL 152

Query: 142 ----RARFGKRVVDTD-------YSVEDKFERLSIVDGGY-----------NRKRGVTAF 179
               +   G    + D       + +    + L  +D              N KR    +
Sbjct: 153 NGKTQLEKGIYYRENDTIKNTGFFELRHDLKSLPFIDRDLTEWKRYAYDNGNFKRIPGTY 212

Query: 180 LTIQEGC-DKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK 238
           +     C    CTFC          +R+   VVDE   L +     I  +  +   +  K
Sbjct: 213 IMAGRDCWHHRCTFCSWTGIYTNFRARTAENVVDEVDFLYNK--YNIREIMDDTGCFPVK 270

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
               + C          ++     +R+      +    L+K          +L   ++S 
Sbjct: 271 KWLNDFCNLMIDKKLNKKVNIDCNMRFGA--CNEDEYRLMK-----KAGFRFLLFGLESA 323

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           S   L  + + +   E              ++     ++G+P ET++D   T +L  K+ 
Sbjct: 324 SQNTLDRLIKGNKVEEILPSCKAASDA--GLSPHITVMLGYPWETEEDIEKTYELTKKLL 381

Query: 359 Y-AQAFSFKYSPRLGTPGSNMLEQ 381
               A + + +  +  PG+ +  Q
Sbjct: 382 LKGYAKTMQATIIIPYPGTELFNQ 405


>gi|83643683|ref|YP_432118.1| Fe-S oxidoreductase [Hahella chejuensis KCTC 2396]
 gi|83631726|gb|ABC27693.1| Fe-S oxidoreductase [Hahella chejuensis KCTC 2396]
          Length = 732

 Score = 69.6 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 50/313 (15%), Positives = 100/313 (31%), Gaps = 51/313 (16%)

Query: 131 QTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNR---KRGVTAFLTIQEGCD 187
           Q +      +       +  + D   E  F+R+     G  R      +   + I  GC 
Sbjct: 325 QKHGDRYLWVNPPAIPLQTKELDDVFELPFQRIPHPAYGKARIPAYDMIRFSVNIMRGCF 384

Query: 188 KFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDN----------------GVCEITLLGQ 230
             C+FC +    G  I SRS   V+ E   + D                  +  +    +
Sbjct: 385 GGCSFCSITEHEGRWIQSRSQDSVIREIENIRDKTPGFTGTISDLGGPTANMYHLNCKSE 444

Query: 231 NVNAWR----------GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKA 280
            ++A             K L  +    + L      + G+ R+   +    D++    + 
Sbjct: 445 EIHANCRRLSCVYPTICKNLKTDHSETTQLYRRARALPGVKRVMIASGLRYDLAVEDPEY 504

Query: 281 HGDL--DVLMPYLHLPVQSGSDRILKSMNRR--HTAYEYRQIIDRI-RSVRPDIAISSDF 335
             +L    +  YL +  +   D  L  M +    T Y+++++ +R  +    +  +   F
Sbjct: 505 VRELVTHHVGGYLKIAPEHSEDAPLSKMMKPGMGTYYKFKEMFERFSKEAGKEQYLIPYF 564

Query: 336 IVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML--------------EQ 381
           I   PG TD+D       + + G+       + P      + M               ++
Sbjct: 565 IAAHPGTTDEDMLNLAMWLKENGFRADQVQAFYPSPMASATAMYHSERDPLHRINYKTDK 624

Query: 382 V--DENVKAERLL 392
           V   +  +  RL 
Sbjct: 625 VYIPKGERQRRLH 637


>gi|294496594|ref|YP_003543087.1| radical SAM protein [Methanohalophilus mahii DSM 5219]
 gi|292667593|gb|ADE37442.1| Radical SAM domain protein [Methanohalophilus mahii DSM 5219]
          Length = 612

 Score = 69.6 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 44/302 (14%), Positives = 99/302 (32%), Gaps = 43/302 (14%)

Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSLS 208
           +D  Y +    ++             V   LT   GC   C+FC + + +G  + SRS+ 
Sbjct: 280 LDEVYELPYTRQKHPSYKEDIPAIEPVRFSLTTHRGCFGACSFCAIAHHQGRMVNSRSIE 339

Query: 209 QVVDEARKLIDN----------GVCEITLLGQNVNAWRGKGL---------------DGE 243
            ++ EA+ L             G     +       W+ KG+               + +
Sbjct: 340 SLLREAKTLTKMKDFKGNINGVGGPTANMYSMECPQWKSKGVCTDKFCLYPEVCPSMNTD 399

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDM---SDCLIKAHGDLDVLMPYLHLPVQSGSD 300
                +LL  L +I G+ ++  T     D+       ++       +   L +  +  S 
Sbjct: 400 HSKNMELLNRLEQIPGVKKVFITYGVRYDLALTQPEYLEMI-CRKHISGRLAVAPEHYSK 458

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIA----ISSDFIVGFPGETDDDFRATMDLVDK 356
           ++  SM +      + + ++   ++   +     + +  + G PG    +   T + +  
Sbjct: 459 KVTDSMRKPG-RDVFEKFVEMYSAINKKLGKEQYLQTYLMSGHPGCGLKEMIETAEYIRD 517

Query: 357 IGYAQAFSFKYSPRLGTPGSNMLEQ-VDE------NVK-AERLLCLQKKLREQQVSFNDA 408
                     ++P   T  + M    +D        V  + R   +Q+ +   +   N  
Sbjct: 518 NKLYSEQVQDFTPTPMTASTCMYHTGIDPFTGKNIEVATSRRDKKIQRTILHYRDKRNRK 577

Query: 409 CV 410
            +
Sbjct: 578 YI 579


>gi|218682821|ref|ZP_03530422.1| putative vitamin B12 binding methyltransferase [Rhizobium etli CIAT
           894]
          Length = 509

 Score = 69.6 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 49/328 (14%), Positives = 102/328 (31%), Gaps = 37/328 (11%)

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVV---GPQTYYRLPELLE-- 141
            R +  +       + +V  G        E+L  +   +++V   G +T  RL + L   
Sbjct: 82  ARVIAEAVKCSNPAIRIVYGGVFPTYHWREVLAETEAFDILVRGEGEETMRRLADCLATG 141

Query: 142 ---------RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAF--------LTIQE 184
                      R G   +      +   +  +   G         ++        +    
Sbjct: 142 RPLATIPGIAYRDGHGEIHATQPAQAIADLDAYRVGWELIDHADYSYWGGKRAVVMQFSR 201

Query: 185 GCDKFCTFCVVPYTRGIEISRSLSQV-VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
           GC   C +C           RS      + AR   + GV  I L  +N  + R       
Sbjct: 202 GCPHLCNYCGQRGFWTRWRHRSPELFAREIARLYREQGVELINLADENPTSSR------- 254

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
           K   + L   ++E   +  +  T +        ++  +    V+     L +++  +  L
Sbjct: 255 KAWLAFLEAMIAENVPVQIVGSTRADDIVRDADILHLYRKAGVVR--WLLGMENTDEATL 312

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
             + +       R+ I  +R    DI   + ++VGF  E   D       +      Q  
Sbjct: 313 ALIKKGGAKTSDREAIRLLRQ--HDILSMATWVVGFEEERLRDLWRGFRQLLSYDPDQIQ 370

Query: 364 SFKYSPRLGTPGSNMLEQ---VDENVKA 388
           +   +P   TP   +      ++ +++ 
Sbjct: 371 ALYVTPHRWTPFFRIARDRQVIETDIRK 398


>gi|257468747|ref|ZP_05632841.1| Radical SAM domain protein [Fusobacterium ulcerans ATCC 49185]
 gi|317063001|ref|ZP_07927486.1| radical SAM domain-containing protein [Fusobacterium ulcerans ATCC
           49185]
 gi|313688677|gb|EFS25512.1| radical SAM domain-containing protein [Fusobacterium ulcerans ATCC
           49185]
          Length = 446

 Score = 69.6 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 64/320 (20%), Positives = 112/320 (35%), Gaps = 43/320 (13%)

Query: 61  DADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRR 120
            ADLIV+ TC      A++ Y++    R+           +  V+ G       +E L+ 
Sbjct: 60  KADLIVI-TC--ITGTAQRCYAYSDYFRS---------RGIKTVLGGVHPSLMPDEALK- 106

Query: 121 SPIVNVVVGPQTYYRLPELLERARFGK----RVVDTDYSVEDKF-ERLSIVDGGYNRKRG 175
               +VV+   + +  P+++   +  +     V   D+S+  K   R  ++  GY  K  
Sbjct: 107 --HADVVMTGFSEFTFPQMIMDFKLKQLKRLYVQGNDFSMAGKPLPRRDLLKKGYITKNT 164

Query: 176 VTAFLTIQEGCDKFCTFCVVPYTRGIEIS-RSLSQVVDEARKLIDNGVCEITLLGQNVNA 234
           + A      GC   CTFC  P   G +I  R + +V++E           +     N+ A
Sbjct: 165 IEAV----RGCSLPCTFCAYPAAFGKKIYKRPVKEVIEEIETF---NSKIVLFPDVNLIA 217

Query: 235 WRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP 294
            R   L+  +       Y L             +    + D LI            L + 
Sbjct: 218 DREYALELFREMIPLKKYWLG----------LATSSVGIDDELIDVFHKSG--CKGLLIG 265

Query: 295 VQSGSDRILKSMNRR-HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
            +S S    K +N+  +    Y +++ R+      I +   F  G   E    F  T++ 
Sbjct: 266 FESISQDSQKYVNKGINNVNGYSELMKRLHDN--GILVQGCFAFGGDEEDASVFERTVEA 323

Query: 354 VDKIGYAQAFSFKYSPRLGT 373
           V K           +P   T
Sbjct: 324 VIKSKIDLPRYSILTPFPKT 343


>gi|119486557|ref|ZP_01620607.1| Fe-S oxidoreductase-like protein [Lyngbya sp. PCC 8106]
 gi|119456174|gb|EAW37306.1| Fe-S oxidoreductase-like protein [Lyngbya sp. PCC 8106]
          Length = 530

 Score = 69.6 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 56/332 (16%), Positives = 115/332 (34%), Gaps = 33/332 (9%)

Query: 58  SMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEI 117
             D A++++L+   +++         + +I+  K           V V G  + +   E+
Sbjct: 62  EWDWAEIVILSAMIVQKD------DLIAQIKEAKRRGKP------VAVGGPYSTSLPHEV 109

Query: 118 LRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT 177
                  + +V  +    LP  +E    G+       + E      + +      +RGV 
Sbjct: 110 QEA--GADYLVVDEGEITLPMFVEALERGETSGFFTSNGEKADITKTPIPRFDLLERGVY 167

Query: 178 AFLTIQ--EGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVCEITLLGQNVNA 234
             + IQ   GC   C FC +    G +  +++ +Q++ E  +L + G      L  +   
Sbjct: 168 ETIAIQYSRGCPFECEFCDIIVLYGRKPRTKTPAQLIAELDRLKELGFRRAVFLVDD--- 224

Query: 235 WRGKGLDGEKCTFSDLLYSL----SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY 290
                  G K     LL  L     E     R     S        L++   + +     
Sbjct: 225 ----NFIGNKRNVKLLLKELKVWMQENDYPFRFFTEASVDLANDQELMELMVEAN--FYS 278

Query: 291 LHLPVQSGSDRILKSMNRR-HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           + + +++  +  L    +  +T     + +++I      + + + FI+GF GE       
Sbjct: 279 VFMGIETPDEASLTLTKKFQNTRDSLSESVEKISRT--GLDVMAGFIIGFDGEKTGAGDR 336

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
            +  V+K G   A          T   + LE+
Sbjct: 337 IVQFVEKTGIPMAMFSMLQALPNTALWHRLEK 368


>gi|328882386|emb|CCA55625.1| putative coproporphyrinogen III oxidase [Streptomyces venezuelae
           ATCC 10712]
          Length = 410

 Score = 69.6 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 48/250 (19%), Positives = 89/250 (35%), Gaps = 43/250 (17%)

Query: 186 CDKFCTFCVV-PYTRGIEI-------SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG 237
           C   C +C    YT            SR      + A ++ +       +LG +    R 
Sbjct: 39  CATRCGYCDFNTYTANELRGTGGVLASRD-----NYAEQVTEEIRLARKVLGDDPRPVRT 93

Query: 238 KGLDGEKCTFS---DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL--- 291
             + G   T     DL+  L+ +    R  +  +   +++        + + + P     
Sbjct: 94  VFVGGGTPTLLAAGDLVRMLAAV----RDEFGLADDAEVTTE-----ANPESVNPAYLAE 144

Query: 292 ---------HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGE 342
                       +QS    +LK ++R HT       +   R+   +  ++ D I G PGE
Sbjct: 145 LREGGFNRISFGMQSAKQHVLKILDRTHTPGRPEACVAEARAAGFE-HVNLDLIYGTPGE 203

Query: 343 TDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN--MLEQVD---ENVKAERLLCLQKK 397
           TDDD+RA++D     G     ++      GT  +      +V    ++V A+R L  +  
Sbjct: 204 TDDDWRASLDAAIGAGPDHVSAYALIVEEGTQLARRIRRGEVPMTDDDVHADRYLIAEDV 263

Query: 398 LREQQVSFND 407
           L      + +
Sbjct: 264 LSRSGFDWYE 273


>gi|206901839|ref|YP_002250965.1| radical SAM [Dictyoglomus thermophilum H-6-12]
 gi|206740942|gb|ACI20000.1| radical SAM [Dictyoglomus thermophilum H-6-12]
          Length = 551

 Score = 69.6 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 43/235 (18%), Positives = 91/235 (38%), Gaps = 30/235 (12%)

Query: 178 AFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLL-GQNVNAWR 236
           A   +  GC   C FC+  Y      S S+  +  + R   D       ++   + +   
Sbjct: 229 ALCELVRGCRYQCRFCLAGYFYRPYRSSSMEIINKKLRNFYDFMPRIGIIVPAVDPSLNL 288

Query: 237 GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQ 296
              ++      SD    +          +++    D++  L+            + +  +
Sbjct: 289 KDFVNN-----SDNEELV--------FSFSSLRLEDINQDLLDLIKRSGQ--KTVTIAPE 333

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI-AISSDFIVGFPGETDDDFRATMDLVD 355
           +G+DR+ + +N+  T  +    +D+++     +  +   F++G P E+ +D      L+ 
Sbjct: 334 AGTDRLRRVLNKGFTNEDILNFVDKLKGY--GVQTLKLYFMLGLPTESGEDIEGIYSLIK 391

Query: 356 KIG-----YAQAFSF-KYSPRLGTP--GSNMLEQVDENVKAERLLCLQKKLREQQ 402
           +I           SF  + P+  TP    +M ++ D  V+ +R   L KKLRE +
Sbjct: 392 EIRSLNPKLEITASFSTFIPKPHTPFQWESMKDK-DYIVEKQRF--LLKKLREIK 443


>gi|160937836|ref|ZP_02085195.1| hypothetical protein CLOBOL_02728 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439275|gb|EDP17028.1| hypothetical protein CLOBOL_02728 [Clostridium bolteae ATCC
           BAA-613]
          Length = 612

 Score = 69.6 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 36/172 (20%), Positives = 65/172 (37%), Gaps = 10/172 (5%)

Query: 183 QEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG 242
             GC   C++C+          RSL  V+DE    ++ GV ++  + +  N         
Sbjct: 226 SRGCPFSCSYCL-SSIDKSVRFRSLELVLDELAYFLEAGVPQVKFVDRTFNC-------- 276

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
            K     +   +      V   +       +    I+  G +   +  L + VQS +   
Sbjct: 277 NKKHAMAIWRFIQSHDNGVTNFHFEIAADLLDQEEIELLGQMRPGLVQLEIGVQSTNPDT 336

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           LK+++R+    E R+I   I     ++    D I G P E  + FR + + V
Sbjct: 337 LKAIHRKTDIDEIRRITGTINQA-HNVHQHLDLIAGLPNENLESFRHSFNQV 387


>gi|318042487|ref|ZP_07974443.1| Fe-S oxidoreductase [Synechococcus sp. CB0101]
          Length = 537

 Score = 69.6 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 62/332 (18%), Positives = 112/332 (33%), Gaps = 40/332 (12%)

Query: 54  ERVNSM-DDADLIVLNTCHI--REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVA 110
           E   +  D A+L+V++   +   + A +     + R +            L V V G  A
Sbjct: 57  EVTEAEWDWAELVVISGMIVQKTDMAVQ-----IARAKQ---------RGLPVAVGGPFA 102

Query: 111 QAEGEEILRRSPIVNVVV---GPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVD 167
            +  +       + +  V   G  T     E +ER   G R        +     +   D
Sbjct: 103 SSTPD--APELELADFKVLDEGEITLPMFIEAIERGESGGRFSANGDKPDVTGTPIPRFD 160

Query: 168 GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVCEIT 226
                     + +    GC   C FC +    G +  +++  Q+V E + L D G     
Sbjct: 161 LLELDAYDSMS-VQFSRGCPFQCEFCDIIVLYGRKPRTKTPEQLVAELQCLYDLGWRRAI 219

Query: 227 LLGQNVNAWRGKGLDGEKCTFSDLLYSLSE--IKGLVRLRYTTSHPRDM--SDCLIKAHG 282
            L  +          G K     LL ++ E  I+      +TT    D+   D +++   
Sbjct: 220 FLVDD-------NFIGNKRNAKLLLPAIKEWQIERGYPFSFTTEASVDLASDDEMMRMMA 272

Query: 283 DLDVLMPYLHLPVQSGSDRILKSMNRR-HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPG 341
           +       + L +++  +  L    +  +T     + +DRI S    I + + FI+GF G
Sbjct: 273 EAR--FEAVFLGIETPDEASLSVAGKHQNTRSSLEESVDRITSY--GIRVMAGFIIGFDG 328

Query: 342 ETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
           E        +  V + G   A          T
Sbjct: 329 EKTGAGDRIVRFVSRTGIPAAMMGMLQALPNT 360


>gi|162453580|ref|YP_001615947.1| hypothetical protein sce5304 [Sorangium cellulosum 'So ce 56']
 gi|161164162|emb|CAN95467.1| hypothetical protein sce5304 [Sorangium cellulosum 'So ce 56']
          Length = 462

 Score = 69.6 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 49/289 (16%), Positives = 89/289 (30%), Gaps = 23/289 (7%)

Query: 103 VVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFER 162
           VV+ G  A A  +E  +     + VV  +     P LL     G R+     +    +  
Sbjct: 117 VVLGGLHASALPDEAAQ---HADSVVQGEGELLWPVLLHELGEG-RLRPLYSARSGAWPA 172

Query: 163 LSIVDGGYNR------KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARK 216
            SI      R       R     L    GC   CTFC           + +  +  E   
Sbjct: 173 FSIEGARVPRYDLLDVARYNRFTLQATRGCPLACTFCAASRLISPYKRKPIPLIRRELDA 232

Query: 217 LIDNG-VCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSD 275
           +I+      + L   N    +    +  +            I        + +       
Sbjct: 233 IIEAWPQPFLELADDNTFVQKPWARELARLFVEYNARRTRPIAWFTETDISVAD----DP 288

Query: 276 CLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH----TAYEYRQIIDRIRSVRPDIAI 331
            L+    + +     L + ++S +   L++   R         Y   + RI+     I +
Sbjct: 289 ELLDLLAESN--CAELLIGLESVNPTALRAAEPRGFKAAERARYVDSVGRIQER--GIPV 344

Query: 332 SSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           +  F++GF  + D  F  T+    +   A+      +P  GT     L+
Sbjct: 345 NGCFVLGFDEDDDGVFERTLAFARECDLAEVQITVLTPFPGTALHRALD 393


>gi|303237283|ref|ZP_07323853.1| uncharacterized radical SAM protein YgiQ [Prevotella disiens
           FB035-09AN]
 gi|302482670|gb|EFL45695.1| uncharacterized radical SAM protein YgiQ [Prevotella disiens
           FB035-09AN]
          Length = 698

 Score = 69.6 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 48/313 (15%), Positives = 92/313 (29%), Gaps = 68/313 (21%)

Query: 126 VVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTA------- 178
            +           +L+       VV+  Y      E  +  D  Y R+            
Sbjct: 284 HIEEESNKKHAQRILQEVDGQYTVVNPPYPTMSTAEVDATYDLPYTREPHPKYNGKTIPA 343

Query: 179 ------FLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDN----------G 221
                  + I  GC   C FC +   +G  I SRS   ++ E ++++            G
Sbjct: 344 YEMIKFSVNIHRGCFGGCAFCTISAHQGKFIASRSKESIIKEVKQVVQMPDFKGYLSDLG 403

Query: 222 VCEITLLGQ---------------NVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
                + G                 +N      LD +     ++   +  + G+ +    
Sbjct: 404 GPSANMYGMARKNQKACEHCKRPSCINPEICPNLDTDHSKLLEIYREVDALPGIKKSFIG 463

Query: 267 -----------------TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
                                R+ +  LIK     + +   L +  +  SDR+LK M + 
Sbjct: 464 SGVRYDLLLHKSKDEKSNEAAREYTRELIK-----NHVSGRLKIAPEHTSDRVLKLMRKP 518

Query: 310 -----HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
                +        I+R  ++R  I     FI   PG  ++D      +   + +     
Sbjct: 519 SFEQFYQFKRIFDRINREENLRQQIIPY--FISSHPGCKEEDMAELAVITKDLDFHLEQV 576

Query: 365 FKYSPRLGTPGSN 377
             ++P   T  + 
Sbjct: 577 QDFTPTPMTVATE 589


>gi|107104027|ref|ZP_01367945.1| hypothetical protein PaerPA_01005100 [Pseudomonas aeruginosa PACS2]
          Length = 747

 Score = 69.6 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 48/298 (16%), Positives = 97/298 (32%), Gaps = 47/298 (15%)

Query: 117 ILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGY---NRK 173
           ++++   V+V   P       E            + DY     + R+     G       
Sbjct: 325 LVQKHGEVDVWFNPPPIPMSTE------------EMDYVFGMPYARVPHPAYGKAKIPAY 372

Query: 174 RGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDN--GVCEIT--LL 228
             +   + I  GC   CTFC +    G  I +RS   ++ E  ++ D   G   +   L 
Sbjct: 373 EMIRFSVNIMRGCFGGCTFCSITEHEGRIIQNRSHDSIIREIEEMRDKVPGFTGVVSDLG 432

Query: 229 GQNVNAWR----------------------GKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
           G   N +R                       + LD +  +  +L      + G+ ++   
Sbjct: 433 GPTANMYRIACKSPDIERHCRKPSCVFPGICENLDTDHSSLIELYRKARALPGVKKILIA 492

Query: 267 TSHPRDMSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRR--HTAYEYRQIIDRI 322
           +    D++    +   +L    +  YL +  +      L  M +    T   ++Q+ ++ 
Sbjct: 493 SGLRYDLAVESPEYVKELVTHHVGGYLKIAPEHTERGPLDKMMKPGIGTYDRFKQMFEKF 552

Query: 323 -RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            +    +  +   FI   PG TD+D       + + G+       + P      + M 
Sbjct: 553 SKEAGKEQYLIPYFIAAHPGTTDEDMMNLALWLKRNGFRADQVQAFYPSPMATATAMY 610


>gi|163847568|ref|YP_001635612.1| radical SAM domain-containing protein [Chloroflexus aurantiacus
           J-10-fl]
 gi|222525420|ref|YP_002569891.1| Radical SAM domain-containing protein [Chloroflexus sp. Y-400-fl]
 gi|163668857|gb|ABY35223.1| Radical SAM domain protein [Chloroflexus aurantiacus J-10-fl]
 gi|222449299|gb|ACM53565.1| Radical SAM domain protein [Chloroflexus sp. Y-400-fl]
          Length = 461

 Score = 69.6 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 51/322 (15%), Positives = 105/322 (32%), Gaps = 38/322 (11%)

Query: 62  ADLIVLNTCHIREKAAEK------------VYSFLGRIRNLKNSRIKEGGDLLVVVAGCV 109
           AD++ ++T  +    AE             +++      ++         +  +V  G  
Sbjct: 30  ADVVCVDT-SVTPLTAEMAANAALIGISVPMHTATRLALDMLPHLRAAAPNAYIVCYGLY 88

Query: 110 AQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGG 169
           A      + +     +  +G +   +L  + +    GKR    D  + ++ + +     G
Sbjct: 89  APLNAAILHQA--GADCCLGGEVEEQLTAIWQHIAAGKRPSVADTILLNRLDLIPPDRNG 146

Query: 170 YNR-----------KRGVTAFLTIQEGCDKFCTFC-VVPYTRGIEISRSLSQVVDEARKL 217
                         K  +  +     GC   C  C VVP   G       S V+ + R  
Sbjct: 147 LPPLDRYATLISGGKTHLAGYTETTRGCKHLCRHCPVVPVYNGHFRVVPRSTVLADIRAQ 206

Query: 218 IDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCL 277
           +  G   IT    +        L+G       +    +E   L                L
Sbjct: 207 VAAGARHITFGDPD-------FLNGPGHVLPIVRAMHAEFPDLTYDVTIKIEHIIRYAHL 259

Query: 278 IKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIV 337
           +        +M  +   V++  D IL    +RH+  +  + +  +R    DIA+++ F+ 
Sbjct: 260 LPELRATGCIM--VVSAVEALDDTILTRFAKRHSRADVVRAVQLLRE--HDIALNATFVA 315

Query: 338 GFPGETDDDFRATMDLVDKIGY 359
             P  T   +R  +  + ++G 
Sbjct: 316 FTPWTTRQVYRDFLLGIAELGL 337


>gi|317968050|ref|ZP_07969440.1| Fe-S oxidoreductase [Synechococcus sp. CB0205]
          Length = 535

 Score = 69.6 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 58/338 (17%), Positives = 113/338 (33%), Gaps = 39/338 (11%)

Query: 48  FFSQGYERVN--SMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVV 105
              +  E V+    + A+L+V++   +++           +I   K         L V V
Sbjct: 50  LVDRNVEEVSEADWEWAELVVISGMIVQKA------DMAAQIAKAKE------RGLPVAV 97

Query: 106 AGCVAQAEGEEILRRSPIVNVVV---GPQTYYRLPELLERARFGKRVVDTDYSVEDKFER 162
            G  A +  +       + +  V   G  T     E +E+   G R        +     
Sbjct: 98  GGPFASSTPD--APELGLADFKVLDEGEITLPMFIEAIEKGEAGGRFSANGEKPDVTSTP 155

Query: 163 LSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNG 221
           +   D         +  +    GC   C FC +    G +  +++  Q++ E + L D G
Sbjct: 156 VPRFDL-LKLDAYDSMSVQFSRGCPFQCEFCDIIVLYGRKPRTKTPEQLIAELQSLYDLG 214

Query: 222 -VCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT----TSHPRDMSDC 276
               I L+  N          G K     LL +L + +      ++     S      + 
Sbjct: 215 WRRSIFLVDDNFI--------GNKRNAKLLLPALKQWQIERGYPFSFATEASVDLAADEE 266

Query: 277 LIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR-HTAYEYRQIIDRIRSVRPDIAISSDF 335
           L++   +       + L +++  +  L    +  +T     + +DRI S    + + + F
Sbjct: 267 LMQMMAECR--FDSVFLGIETPDEASLSVAGKHQNTRSSLEEAVDRINSY--GLRVMAGF 322

Query: 336 IVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
           I+GF GE        ++ V + G   A          T
Sbjct: 323 IIGFDGEKTGAGDRIVEFVTRTGIPAAMMGMLQALPNT 360


>gi|212702554|ref|ZP_03310682.1| hypothetical protein DESPIG_00577 [Desulfovibrio piger ATCC 29098]
 gi|212673995|gb|EEB34478.1| hypothetical protein DESPIG_00577 [Desulfovibrio piger ATCC 29098]
          Length = 882

 Score = 69.6 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 58/306 (18%), Positives = 107/306 (34%), Gaps = 30/306 (9%)

Query: 116 EILRRSPIVNV--VVGPQTYYR-LPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNR 172
           E  R  P V +     P    R  P   + AR  +R+V     V     ++  +   +NR
Sbjct: 193 EEARHIPGVYIPSFFTPDAEGRLQPRFADHARPSRRIVADFDKVAYPTSQVVPIGAVHNR 252

Query: 173 KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQN 231
                  L I  GC + C FC           RSL  +       +   G  EI+ L  +
Sbjct: 253 LS-----LEIARGCTRGCRFCHAGMVYRPVRERSLDTITGLLDDCLKKTGFDEISFLSLS 307

Query: 232 VNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL 291
                       K     +L   ++ +  + L   +     + D +++    L       
Sbjct: 308 TG-----DFSALKTLSHGVLGRCAQEQ--ISLSLPSLRVGSIDDEIMQRMSGLRR--TGC 358

Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351
            L  ++GS R+   +N+  T  +    + ++        +   F++G P ETD+D +A  
Sbjct: 359 TLAPEAGSQRLRDVINKGVTEEQVLLHVQKLLEYGWR-QVKLYFMIGLPTETDEDLKAIA 417

Query: 352 DLVDKIG----------YAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQ 401
           DL  K+              A    + P+  TP    +EQ+ +     R+  ++ + + Q
Sbjct: 418 DLCRKVRDAAGKGNPRLQVTAALSPFVPKPFTP-FQWVEQISQEEIQRRVQVVRNEFKGQ 476

Query: 402 QVSFND 407
           +     
Sbjct: 477 KFLKLR 482


>gi|326790702|ref|YP_004308523.1| radical SAM protein [Clostridium lentocellum DSM 5427]
 gi|326541466|gb|ADZ83325.1| Radical SAM domain protein [Clostridium lentocellum DSM 5427]
          Length = 655

 Score = 69.6 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 63/375 (16%), Positives = 120/375 (32%), Gaps = 63/375 (16%)

Query: 109 VAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDG 168
           +A    E+    +  V +V          + + + +  K +V  +         +     
Sbjct: 231 MAYKMQEDEQDHARGVTLV-----QEHNGKYVVQNKPEKPLVREELDEVYALPYMKNYHP 285

Query: 169 GYNRKRGVTAFLTI------QEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEAR------ 215
            Y ++ GV A   +        GC   C+FC +   +G  + SRS   +V+EA       
Sbjct: 286 IYEKEGGVPAIEEVKFSLVSSRGCFGNCSFCAITLHQGRVVTSRSQESIVEEAEAITHMP 345

Query: 216 ----KLIDNGVCEITLLG---------------QNVNAWRGKGLDGEKCTFSDLLYSLSE 256
                + D G       G               Q +     K +  +   +  LL  +  
Sbjct: 346 DFKGYIHDVGGPTANFRGPACSKQLEHGACKNKQCLTPGPCKAMHKDHEEYLQLLRKVRN 405

Query: 257 IKGLVR------LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
           I G+ +      +RY        +D   +   +   +   L +  +  S  +L  M +  
Sbjct: 406 IPGVKKAFIRSGIRYDYVMADKNNDKFFEELVEH-HVSGQLKVAPEHISKEVLAYMGKP- 463

Query: 311 TAYEYRQIIDRIRSVRPDIA----ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
           +   +    D+  ++   +     I    +   PG    D     + +  I Y       
Sbjct: 464 SGKIFDDFCDKFYAINKRLGKKQYIIPYLMSSHPGSRLQDAIELAEYLRDIHYQPEQVQD 523

Query: 367 YSPRLGTPGSNMLEQ-VDENV-------KAERLLCLQKKLREQQVSFNDACVGQIIEVLI 418
           + P  GT  + M    +D          K +R   +Q+ L + +       V    E L+
Sbjct: 524 FYPTPGTLSTAMFYTGIDPRTLKPVYVPKTKREKAMQRALLQYRNPKKYEIV---YEALV 580

Query: 419 EKHGKEKGKLVGRSP 433
           E  G+E   L+G  P
Sbjct: 581 E-AGRED--LIGYGP 592


>gi|313109928|ref|ZP_07795856.1| putative radical SAM domain-containing protein [Pseudomonas
           aeruginosa 39016]
 gi|310882358|gb|EFQ40952.1| putative radical SAM domain-containing protein [Pseudomonas
           aeruginosa 39016]
          Length = 747

 Score = 69.6 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 48/298 (16%), Positives = 97/298 (32%), Gaps = 47/298 (15%)

Query: 117 ILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGY---NRK 173
           ++++   V+V   P       E            + DY     + R+     G       
Sbjct: 325 LVQKHGEVDVWFNPPPIPMSTE------------EMDYVFGMPYARVPHPAYGKAKIPAY 372

Query: 174 RGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDN--GVCEIT--LL 228
             +   + I  GC   CTFC +    G  I +RS   ++ E  ++ D   G   +   L 
Sbjct: 373 EMIRFSVNIMRGCFGGCTFCSITEHEGRIIQNRSHDSIIREIEEMRDKVPGFTGVVSDLG 432

Query: 229 GQNVNAWR----------------------GKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
           G   N +R                       + LD +  +  +L      + G+ ++   
Sbjct: 433 GPTANMYRIACKSPDIERHCRKPSCVFPGICENLDTDHSSLIELYRKARALPGVKKILIA 492

Query: 267 TSHPRDMSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRR--HTAYEYRQIIDRI 322
           +    D++    +   +L    +  YL +  +      L  M +    T   ++Q+ ++ 
Sbjct: 493 SGLRYDLAVESPEYVKELVTHHVGGYLKIAPEHTERGPLDKMMKPGIGTYDRFKQMFEKF 552

Query: 323 -RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            +    +  +   FI   PG TD+D       + + G+       + P      + M 
Sbjct: 553 SKEAGKEQYLIPYFIAAHPGTTDEDMMNLALWLKRNGFRADQVQAFYPSPMATATAMY 610


>gi|222056421|ref|YP_002538783.1| radical SAM protein [Geobacter sp. FRC-32]
 gi|221565710|gb|ACM21682.1| Radical SAM domain protein [Geobacter sp. FRC-32]
          Length = 502

 Score = 69.6 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 67/419 (15%), Positives = 133/419 (31%), Gaps = 74/419 (17%)

Query: 43  RMEDMFFSQGYERVNSMDDA-------------------DLIVLNTCHIREKAAEKVYSF 83
            +     +QGYE      DA                   D++          A     + 
Sbjct: 31  YIAGALRAQGYEV--DYYDAMSLWHKWPEIQERIEAFNPDVV----------ATTAYTAS 78

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIV-NVVVGPQTYYRLPELLER 142
           +     L          ++ V+    A    EE+L     V + VV  +    LP LL  
Sbjct: 79  IVHAVELVRLAKSVNPQVVTVIGNVHATFCYEELLSADHNVIDYVVRGEGEVTLPSLLNC 138

Query: 143 ARFGKRVVDTD----------------------YSVEDKFERLSIVDGGYNRKRGVT-AF 179
              G+                             S++  ++ +      Y  K     A 
Sbjct: 139 LNAGEDPAAVPGLAFYSGGSVIATPKAPYIQDLDSLQAAWDLVEWPIYTYRAKNNARLAI 198

Query: 180 LTIQEGCDKFCTFCVVPYTRG-IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK 238
           ++   GC + C+FC           +RS    + E   L +    E+ +L   +  +   
Sbjct: 199 VSSSRGCQQKCSFCSQQLFWAQTWRARSPENFIAELEMLNNKYGVEVAMLSDEIPTF--- 255

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
             D        ++     +K L+  R            ++  +      + ++++ V++G
Sbjct: 256 DRDRWVRILDLMIERKVGVKLLMETRV---DDILRDADIMDKYRKAG--VEHIYVGVEAG 310

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           S   L    +     + +  ID I +   DI   + F++G P +T +   AT++L     
Sbjct: 311 SQETLDLFKKDTKVEQSKLAIDIINNA--DIVSETSFVLGMPEDTPESIAATIELAKHYN 368

Query: 359 YAQAFSFKYSPRLGTPGSNMLEQVDENV--KAERLLCLQKKLRE---QQVSFNDACVGQ 412
              AF    +P      + +  Q+++ V  K  R   L + + +     V   +  +G+
Sbjct: 369 PDMAFFLAIAPWPY---AELYPQLEKYVVTKDYRKYNLVEPVLKPINMSVDELEKELGK 424


>gi|260890900|ref|ZP_05902163.1| BchE/P-methylase family protein [Leptotrichia hofstadii F0254]
 gi|260859453|gb|EEX73953.1| BchE/P-methylase family protein [Leptotrichia hofstadii F0254]
          Length = 440

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 58/307 (18%), Positives = 120/307 (39%), Gaps = 33/307 (10%)

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R +++      +G   L+   G  A A  EE L+     + V+        P  LE   
Sbjct: 79  KRAKDIAKFWKSKGAYTLI--GGHYATALKEEALQYF---DTVITGAAEISFPMFLEDFT 133

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTI--QEGCDKFCTFC-VVPYTRGI 201
            G    +    V + +E   +       K+    + TI    GC   C++C +     G 
Sbjct: 134 NGTPKREYFNLVGNDYEPKPLNRKLLKNKKYFKNYGTIVANNGCPNKCSYCSITKMYSGK 193

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
              +S+  V++E +    N   +   L  N          G +     L+  L ++K   
Sbjct: 194 NQIKSIEYVINEIKT---NKPKKWIFLDPNFL--------GNRNYAIQLMEELKKLK--- 239

Query: 262 RLRYTTSHPRDMSDC--LIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR-HTAYEYRQI 318
            +++T S   ++ +   +++   +   +   L + ++S     L  +N++ +   EY+++
Sbjct: 240 -IKWTASATINIGNDKKILQLMKESGCI--GLVIGLESFVQENLDGVNKKFNNVTEYKKL 296

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           +  I+S    I++ S  ++G   +T +  R   D++++IG         +P  GTP    
Sbjct: 297 VKTIQSY--GISVLSTLMIGMETDTVESIRQIPDIIEEIGVDVPRYNIITPYPGTP---F 351

Query: 379 LEQVDEN 385
             Q+ E 
Sbjct: 352 FNQLKEE 358


>gi|37520963|ref|NP_924340.1| hypothetical protein gll1394 [Gloeobacter violaceus PCC 7421]
 gi|35211958|dbj|BAC89335.1| gll1394 [Gloeobacter violaceus PCC 7421]
          Length = 521

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 48/303 (15%), Positives = 96/303 (31%), Gaps = 33/303 (10%)

Query: 79  KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVV---------- 128
           +++  LG IR           +  VVV G       E++  + P   +V           
Sbjct: 126 ELWRNLGLIRRGYAMARAHNREARVVVGGGAISVFYEQLASQLPQGTIVSVGEGETLFEK 185

Query: 129 ---GPQTYYRLPELLERARFGKRVVDTDYSVEDK------FERLSIVDGGYNRKRGVTAF 179
              G         ++ R R    +V    +   K      +         Y         
Sbjct: 186 LLRGEDIASERCYVVGRTRPRPGLVAEPPTPMVKTACNYDYIGQIWPQFDYYLDGDFYIG 245

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISR-SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK 238
           +  + GC   C +C+     G ++      +VV E R+L D G+                
Sbjct: 246 VQTKRGCPHNCIYCIYTVVEGKQVRVNPAHEVVREMRQLYDRGIRNFWFTDAQFVPS--- 302

Query: 239 GLDGEKCTFSDLLYSLSEIK--GLVRLRY-TTSHPRDMSDCLIKAHGDLDVLMPYLHLPV 295
                K   +D +  L  IK  G+  + +       ++   L +   +    M Y  + +
Sbjct: 303 -----KKYIADCIELLGAIKASGMQDIHWAAYIRADNLPPELTRLMVETG--MNYFEIGI 355

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
            SGS  +++ M   +      +    +++   +  +S ++     GET    R T+    
Sbjct: 356 TSGSQSLVRKMRLGYNLRTVLENCRHLKTSGFNDLVSVNYSFNVIGETHQTIRETIAFHR 415

Query: 356 KIG 358
           ++ 
Sbjct: 416 ELE 418


>gi|254244179|ref|ZP_04937501.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
 gi|126197557|gb|EAZ61620.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
          Length = 747

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 48/298 (16%), Positives = 97/298 (32%), Gaps = 47/298 (15%)

Query: 117 ILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGY---NRK 173
           ++++   V+V   P       E            + DY     + R+     G       
Sbjct: 325 LVQKHGEVDVWFNPPPIPMSTE------------EMDYVFGMPYARVPHPAYGKAKIPAY 372

Query: 174 RGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDN--GVCEIT--LL 228
             +   + I  GC   CTFC +    G  I +RS   ++ E  ++ D   G   +   L 
Sbjct: 373 EMIRFSVNIMRGCFGGCTFCSITEHEGRIIQNRSHDSIIREIEEMRDKVPGFTGVVSDLG 432

Query: 229 GQNVNAWR----------------------GKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
           G   N +R                       + LD +  +  +L      + G+ ++   
Sbjct: 433 GPTANMYRIACKSPDIERHCRKPSCVFPGICENLDTDHSSLIELYRKARALPGVKKILIA 492

Query: 267 TSHPRDMSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRR--HTAYEYRQIIDRI 322
           +    D++    +   +L    +  YL +  +      L  M +    T   ++Q+ ++ 
Sbjct: 493 SGLRYDLAVESPEYVKELVTHHVGGYLKIAPEHTERGPLDKMMKPGIGTYDRFKQMFEKF 552

Query: 323 -RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            +    +  +   FI   PG TD+D       + + G+       + P      + M 
Sbjct: 553 SKEAGKEQYLIPYFIAAHPGTTDEDMMNLALWLKRNGFRADQVQAFYPSPMATATAMY 610


>gi|15600121|ref|NP_253615.1| hypothetical protein PA4928 [Pseudomonas aeruginosa PAO1]
 gi|218894023|ref|YP_002442892.1| hypothetical protein PLES_53141 [Pseudomonas aeruginosa LESB58]
 gi|47606313|sp|Q9HUN6|Y4928_PSEAE RecName: Full=UPF0313 protein PA4928
 gi|9951207|gb|AAG08313.1|AE004906_1 conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
 gi|218774251|emb|CAW30068.1| putative radical SAM domain protein [Pseudomonas aeruginosa LESB58]
          Length = 747

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 48/298 (16%), Positives = 97/298 (32%), Gaps = 47/298 (15%)

Query: 117 ILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGY---NRK 173
           ++++   V+V   P       E            + DY     + R+     G       
Sbjct: 325 LVQKHGEVDVWFNPPPIPMSTE------------EMDYVFGMPYARVPHPAYGKAKIPAY 372

Query: 174 RGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDN--GVCEIT--LL 228
             +   + I  GC   CTFC +    G  I +RS   ++ E  ++ D   G   +   L 
Sbjct: 373 EMIRFSVNIMRGCFGGCTFCSITEHEGRIIQNRSHDSIIREIEEMRDKVPGFTGVVSDLG 432

Query: 229 GQNVNAWR----------------------GKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
           G   N +R                       + LD +  +  +L      + G+ ++   
Sbjct: 433 GPTANMYRIACKSPDIERHCRKPSCVFPGICENLDTDHSSLIELYRKARALPGVKKILIA 492

Query: 267 TSHPRDMSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRR--HTAYEYRQIIDRI 322
           +    D++    +   +L    +  YL +  +      L  M +    T   ++Q+ ++ 
Sbjct: 493 SGLRYDLAVESPEYVKELVTHHVGGYLKIAPEHTERGPLDKMMKPGIGTYDRFKQMFEKF 552

Query: 323 -RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            +    +  +   FI   PG TD+D       + + G+       + P      + M 
Sbjct: 553 SKEAGKEQYLIPYFIAAHPGTTDEDMMNLALWLKRNGFRADQVQAFYPSPMATATAMY 610


>gi|297568542|ref|YP_003689886.1| Radical SAM domain protein [Desulfurivibrio alkaliphilus AHT2]
 gi|296924457|gb|ADH85267.1| Radical SAM domain protein [Desulfurivibrio alkaliphilus AHT2]
          Length = 626

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 47/288 (16%), Positives = 90/288 (31%), Gaps = 51/288 (17%)

Query: 158 DKFERLSIVDGGYNRKRGVTAF------LTIQEGCDKFCTFC-VVPYTRGIEISRSLSQV 210
           D+   L      + +   V AF      +TI  GC   C FC +  +  G  +SRS   +
Sbjct: 308 DRLYALPYARRPHPQAGRVPAFTMVRDSVTIVRGCCGNCAFCAITRHQGGRVVSRSRESI 367

Query: 211 VDEARKLIDNGVCEITLL---GQNVN------AWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           + E  ++        T+    G   N      + R +G     C + D+   L   +  +
Sbjct: 368 IAEVAQIAQAPDFRGTITDLGGPTANLYGCSCSRRKEGCSRRDCLYPDVCRELRIDEDTL 427

Query: 262 RLRYTTSHPRDMSDCLI-------KAHGDLDVLMPY---------LHLPVQSGSDRILKS 305
                 +        L+       +       L+           L +  +     +L+ 
Sbjct: 428 LELLQAAAAVAGVRHLLVSSGLRMELLLKTPRLLRRLLEHHTPGTLKIAPEHTEPEVLRL 487

Query: 306 MNRRHTA--YEYRQIIDRI------RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
           M++   +   ++ Q  +R+      RS +    ++   I   PG T       +  + K+
Sbjct: 488 MHKPDGSVLEKFVQTFNRLAAELARRSEKKPPTLNPYLISAHPGCTMAHMEEMVRKLQKL 547

Query: 358 GYAQAFSFKYSPRLGT-----------PGSNMLEQVDENVKAERLLCL 394
                    ++P  GT           P S     V +  +  R   L
Sbjct: 548 NLVPRQFQDFTPTPGTLATAIYVSGLDPASGRPVHVPKGDQERRRQRL 595


>gi|282861821|ref|ZP_06270885.1| oxygen-independent coproporphyrinogen III oxidase [Streptomyces sp.
           ACTE]
 gi|282563637|gb|EFB69175.1| oxygen-independent coproporphyrinogen III oxidase [Streptomyces sp.
           ACTE]
          Length = 413

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 48/247 (19%), Positives = 92/247 (37%), Gaps = 37/247 (14%)

Query: 186 CDKFCTFCVV--------PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG 237
           C   C +C            + G   SR      + A  L++       +LG +    R 
Sbjct: 42  CATRCGYCDFNTYTATELRGSGGALASRD-----NYAAHLVEEVRQARKVLGDDPRPVRT 96

Query: 238 KGLDGEKCTF---SDLLYSLSEIKGLVRLRYTTSHPRDMSDC---------LIKAHGDLD 285
             + G   T    +DL+  L+ I    R  +  +   +++            ++A  +  
Sbjct: 97  VFVGGGTPTLLPAADLVRMLAAI----REEFGLADDAEITTEANPESVGPAYLQALREGG 152

Query: 286 VLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDD 345
                +   +QS    +LK ++R HT       +   R+   +  ++ D I G PGE+DD
Sbjct: 153 --FNRISFGMQSARQHVLKILDRTHTPGRPEACVAEARAAGFE-HVNLDLIYGTPGESDD 209

Query: 346 DFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN--MLEQVD---ENVKAERLLCLQKKLRE 400
           D+RA++D     G     ++      GT  +      +V    ++V A+R L   + +  
Sbjct: 210 DWRASLDAAIGAGPDHVSAYALIVEEGTQLARRIRRGEVPMTDDDVHADRYLIADEAMAA 269

Query: 401 QQVSFND 407
              S+ +
Sbjct: 270 AGFSWYE 276


>gi|294789909|ref|ZP_06755134.1| lipoyl synthase [Simonsiella muelleri ATCC 29453]
 gi|294482160|gb|EFG29862.1| lipoyl synthase [Simonsiella muelleri ATCC 29453]
          Length = 324

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 39/208 (18%), Positives = 72/208 (34%), Gaps = 12/208 (5%)

Query: 161 ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN 220
           E  S  + G     G   F+ + + C + C FC V + R  E+    ++    A  +   
Sbjct: 63  EEASCPNIGECFSHGTATFMIMGDICTRRCPFCDVGHGRPNEL--DANEPRHLAESVAAM 120

Query: 221 GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKA 280
            +  + +   +    R    DG    F+D + ++ E     ++       R   D  ++ 
Sbjct: 121 KLKYVVITSVD----RDDLRDGGAQHFADCINAIRETSPNTKIEILVPDFRGRLDIALEI 176

Query: 281 HGDLDV-LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGF 339
                  +M +          R+ K            +++ R R + P I   S  +VG 
Sbjct: 177 LAKNPPDVMNHNLETH----PRLYKQARPGADYQHSLELLRRFREMMPHIPTKSGIMVGL 232

Query: 340 PGETDDDFRATMDLVDKIGYAQAFSFKY 367
            GETDD+ R  M  +           +Y
Sbjct: 233 -GETDDEIREIMRDMRANNIEMITVGQY 259


>gi|257075562|ref|ZP_05569923.1| Fe-S oxidoreductase [Ferroplasma acidarmanus fer1]
          Length = 532

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 43/199 (21%), Positives = 70/199 (35%), Gaps = 13/199 (6%)

Query: 179 FLTIQEGCDKFCTFC-VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG 237
            L    GC   C FC V P       ++S  +++ E       G   I            
Sbjct: 201 CLETSRGCPYGCDFCSVTPTWGNTWRNKSNERIIKEMENAKSYGYNWIFFTDDIF--IVE 258

Query: 238 KGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQS 297
             +   +  F  +L        +V++R            LI+        M    L V+S
Sbjct: 259 PNVKHREALFDMILEKNLNTSWIVQMRV---DVTSRHPDLIEKAAKAG--MSISFLGVES 313

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
           GS+ ILK M++     +  Q +  + S   DI +    ++G P E   D R+T+    ++
Sbjct: 314 GSEEILKKMHKGEFTPQSAQAVRILSSN--DIVVIVGMMIGAPYERYRDLRSTVRFSREL 371

Query: 358 ---GYAQAFSFKYSPRLGT 373
              G        Y+P  GT
Sbjct: 372 ARAGADALQFSIYTPLPGT 390


>gi|116749640|ref|YP_846327.1| radical SAM domain-containing protein [Syntrophobacter fumaroxidans
           MPOB]
 gi|116698704|gb|ABK17892.1| Radical SAM domain protein [Syntrophobacter fumaroxidans MPOB]
          Length = 565

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 42/233 (18%), Positives = 74/233 (31%), Gaps = 28/233 (12%)

Query: 158 DKFERLSIVDGGYNRKRGVTAFLTI-----QEGCDKF-CTFCVVPYTRGIEISRSLSQVV 211
           +K E L + D          + + I       GC    C FC    T            V
Sbjct: 270 EKLEELPLPDFDDCNPAAYLSPMPILPYLSSRGCFWRRCAFCTHRKTYLAYREEPPEYTV 329

Query: 212 -DEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270
              A     +G    +L+ + ++             FS L   + E    +R        
Sbjct: 330 SRLAELSRRHGAVLFSLVDEMIH----------PHRFSRLARKILEAGLDIRYAAYAKPT 379

Query: 271 RDMSDCLI-KAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329
                 L+ + H     ++      V+SG+ R+L  M +   A    ++++  R     I
Sbjct: 380 ARFDAALLGRLHASGARVV---MWGVESGNQRVLDLMRKGTRADRMGRVLEDARRA--GI 434

Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIG--YAQAFSFKYSPRLGTPGSNMLE 380
                 + GFP ET  +   TM  ++            ++    G   ++MLE
Sbjct: 435 RNLVFVMFGFPSETRQEREDTMRFLEAHRDSIDALSKSRFILLEG---ADMLE 484


>gi|257125083|ref|YP_003163197.1| radical SAM protein [Leptotrichia buccalis C-1013-b]
 gi|257049022|gb|ACV38206.1| Radical SAM domain protein [Leptotrichia buccalis C-1013-b]
          Length = 440

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 57/307 (18%), Positives = 119/307 (38%), Gaps = 33/307 (10%)

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
            R + +      +G   L+   G  A A  EE L+     + V+        P  +E   
Sbjct: 79  KRAKEIAKFWKSKGAYTLI--GGHYATALKEEALQYF---DTVITGAAEISFPMFIEDFT 133

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTI--QEGCDKFCTFC-VVPYTRGI 201
            G    +    V + +E   +       K+    + TI    GC   C++C +     G 
Sbjct: 134 NGTPKREYFNLVGNDYEPKPLNRKLLKNKKYFKNYGTIVANNGCPNKCSYCSITKMYSGK 193

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
              +S+  V++E +    N   +   L  N          G +     L+  L ++K   
Sbjct: 194 NQIKSIDYVINEIKT---NKPKKWIFLDPNFL--------GNRNYAIQLMEELKKLK--- 239

Query: 262 RLRYTTSHPRDMSDC--LIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR-HTAYEYRQI 318
            +++T S   ++ +   +++   +   +   L + ++S     L  +N++ +   EY+++
Sbjct: 240 -IKWTASATINIGNDKKILQLMKESGCI--GLVIGLESFVQENLDGVNKKFNNVAEYKKL 296

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           +  I+S    I++ S  ++G   +T +  R   D++++IG         +P  GTP    
Sbjct: 297 VKTIQSY--GISVLSTLMIGMETDTVESIRRIPDIIEEIGVDVPRYNIITPYPGTP---F 351

Query: 379 LEQVDEN 385
             Q+ E 
Sbjct: 352 FNQLKEE 358


>gi|294812565|ref|ZP_06771208.1| Coproporphyrinogen III oxidase [Streptomyces clavuligerus ATCC
           27064]
 gi|326440982|ref|ZP_08215716.1| coproporphyrinogen III oxidase [Streptomyces clavuligerus ATCC
           27064]
 gi|294325164|gb|EFG06807.1| Coproporphyrinogen III oxidase [Streptomyces clavuligerus ATCC
           27064]
          Length = 410

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 47/247 (19%), Positives = 86/247 (34%), Gaps = 37/247 (14%)

Query: 186 CDKFCTFCVV-PYTRGIEI-------SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG 237
           C   C +C    YT            SR      + A  + +      T+LG +    R 
Sbjct: 39  CATRCGYCDFNTYTASELRGSGGVLASRD-----NYAATVAEEVRHARTVLGDDPRPVRT 93

Query: 238 KGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL------ 291
             + G   T       L  +   VR  +  +   +++        + + + P        
Sbjct: 94  VFVGGGTPTL-LPARDLVAMVETVRKEFGLAEDAEITTE-----ANPESVGPEYLEELRA 147

Query: 292 ------HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDD 345
                    +QS    +LK ++R HT       +   R+      ++ D I G PGE+D+
Sbjct: 148 GGFNRISFGMQSARRHVLKVLDRTHTPGRPEACVAEARAAGFG-HVNLDLIYGTPGESDE 206

Query: 346 DFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN--MLEQVD---ENVKAERLLCLQKKLRE 400
           D+RA++      G     ++      GT  +      +V    ++V A+R L  +  L E
Sbjct: 207 DWRASLTAAVGAGPDHISAYALIVEEGTQLARRIRRGEVPMTDDDVHADRYLIAESVLAE 266

Query: 401 QQVSFND 407
              S+ +
Sbjct: 267 AGYSWYE 273


>gi|254392599|ref|ZP_05007776.1| coproporphyrinogen III oxidase [Streptomyces clavuligerus ATCC
           27064]
 gi|197706263|gb|EDY52075.1| coproporphyrinogen III oxidase [Streptomyces clavuligerus ATCC
           27064]
          Length = 416

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 47/247 (19%), Positives = 86/247 (34%), Gaps = 37/247 (14%)

Query: 186 CDKFCTFCVV-PYTRGIEI-------SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG 237
           C   C +C    YT            SR      + A  + +      T+LG +    R 
Sbjct: 45  CATRCGYCDFNTYTASELRGSGGVLASRD-----NYAATVAEEVRHARTVLGDDPRPVRT 99

Query: 238 KGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL------ 291
             + G   T       L  +   VR  +  +   +++        + + + P        
Sbjct: 100 VFVGGGTPTL-LPARDLVAMVETVRKEFGLAEDAEITTE-----ANPESVGPEYLEELRA 153

Query: 292 ------HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDD 345
                    +QS    +LK ++R HT       +   R+      ++ D I G PGE+D+
Sbjct: 154 GGFNRISFGMQSARRHVLKVLDRTHTPGRPEACVAEARAAGFG-HVNLDLIYGTPGESDE 212

Query: 346 DFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN--MLEQVD---ENVKAERLLCLQKKLRE 400
           D+RA++      G     ++      GT  +      +V    ++V A+R L  +  L E
Sbjct: 213 DWRASLTAAVGAGPDHISAYALIVEEGTQLARRIRRGEVPMTDDDVHADRYLIAESVLAE 272

Query: 401 QQVSFND 407
              S+ +
Sbjct: 273 AGYSWYE 279


>gi|189345688|ref|YP_001942217.1| Radical SAM domain protein [Chlorobium limicola DSM 245]
 gi|189339835|gb|ACD89238.1| Radical SAM domain protein [Chlorobium limicola DSM 245]
          Length = 608

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 59/307 (19%), Positives = 102/307 (33%), Gaps = 36/307 (11%)

Query: 90  LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG--- 146
           L+ + I +  ++ VV+ G    A  EE+L     V+ VV  +      EL+++       
Sbjct: 84  LRLAGIAKEHNVFVVMGGFHPTALPEEVLG-HSCVDAVVIGEGEATFRELVQKGPSKDVR 142

Query: 147 ---------------KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCT 191
                          + V+    S+      L     G          +    GC   C+
Sbjct: 143 GLAYREGGGIVYTAPRPVIGEIDSIAFPLRTLRPKRYGEKGTDYSIDTIYTSRGCPWSCS 202

Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLL 251
           FC           RS   VV+E   L D    ++  +            D    T     
Sbjct: 203 FCANDTMHKNWRGRSPENVVEEFALLHDPKKKKLIKI-----------WDANFLTNIKRA 251

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMP----YLHLPVQSGSDRILKSMN 307
            ++ ++     L          +  LI+A   L  L       + L ++S + R L+ MN
Sbjct: 252 ETICDMMIERGLTNFRIMTETRAKDLIRAERILGKLRKIGLSKVGLGIESPNIRTLELMN 311

Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           +++   +  + I  +R     I     FI+G   ET +D     +    +G  QA     
Sbjct: 312 KKNVLDDVSRAITLVRQN--GIGAEGYFIIGHYTETVEDTLVYPEFAKSLGLRQALFMSM 369

Query: 368 SPRLGTP 374
           +P  GT 
Sbjct: 370 TPYPGTK 376


>gi|91201969|emb|CAJ75029.1| conserved hypothetical protein [Candidatus Kuenenia
           stuttgartiensis]
          Length = 490

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 53/332 (15%), Positives = 118/332 (35%), Gaps = 34/332 (10%)

Query: 57  NSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEE 116
           + +  AD   ++   ++  +A+     +GR              + VV  G +  +E E+
Sbjct: 59  DDLLWADYAFISGMVVQRTSAK---HIIGRCSKA---------GVKVVAGGPLFTSEHEQ 106

Query: 117 ILRRSPIVNVVVGPQTYYRLPELLERARFG-KRVVDTDYSVEDKFERLSIVDGGYNRKRG 175
                  V+  V  +    L   LE       + V    +  D  +  + +    +  + 
Sbjct: 107 F----ENVDHFVLNEAELTLSPFLEDLNNNCAKRVYISSNFADIQKTPTPLWELADLNQY 162

Query: 176 VTAFLTIQEGCDKFCTFC-VVPYTRGIEISRSLSQVVDEARKLIDNGVC-EITLLGQNVN 233
            +  +    GC   C FC V         ++++ Q++ E     + G    +  +  N+ 
Sbjct: 163 ASMSIQYSRGCPYHCEFCNVTSLFGRRTRTKTVEQIIAELDSFYNRGWRGPVFFVDDNL- 221

Query: 234 AWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP---RDMSDCLIKAHGDLDVLMPY 290
                 L  +K   ++LL +L + +G        +         + L++   +   +   
Sbjct: 222 ------LGNKKTLKNELLPALIKWQGEHVPITFNTEISINIADDESLMQMMSEAGFI--T 273

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV-RPDIAISSDFIVGFPGETDDDFRA 349
           + + +++     L   N++      R +++ +R + R  + + + FIVGF  +T   F+ 
Sbjct: 274 VFIGIETPDTDSLAECNKKQNK--NRNLLEDVRRIQRAGLQVQAGFIVGFDSDTPSIFQR 331

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
            +D +   G   A         GT     L Q
Sbjct: 332 QIDFIQNSGIVSAMIGLLQAPTGTRLYERLMQ 363


>gi|114561584|ref|YP_749097.1| hypothetical protein Sfri_0396 [Shewanella frigidimarina NCIMB 400]
 gi|114332877|gb|ABI70259.1| Radical SAM N-terminal domain protein [Shewanella frigidimarina
           NCIMB 400]
          Length = 773

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 62/378 (16%), Positives = 121/378 (32%), Gaps = 54/378 (14%)

Query: 40  DSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGG 99
           DS ++ D       E + S   AD +    C       ++        + +     +   
Sbjct: 232 DSRKI-DQLHKI--EPLPSPYGADDV---GCSNLSGPTDEKIFDNEAPKAISVQPPRPKP 285

Query: 100 DLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV-VDTDYSVED 158
                V         E+    +    ++   Q       L +     + V V+      +
Sbjct: 286 WEKTYVLLPAYNKVSEDKYLYAHASRILHQEQNPGCARALFQPHDANRGVWVNPPAWPLN 345

Query: 159 KFERLSIVDGGYNR-------KRGVTAF------LTIQEGCDKFCTFCVVPYTRGIEI-S 204
             E  ++ D  Y R       K  + A+      + I  GC   C+FC +    G  I S
Sbjct: 346 TDEMDAVFDLPYQRIPHPMYGKEKIPAYDMIKTSINIMRGCFGGCSFCSITEHEGRIIQS 405

Query: 205 RSLSQVVDEARKLIDN--GVCEIT--LLGQNVNAWR----------------------GK 238
           RS   ++ E + + +   G   +   L G   N +R                        
Sbjct: 406 RSQESIIKEIKDIQEKVPGFTGVISDLGGPTANMYRLGCTSEKAEKTCRRLSCVFPSICG 465

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV--LMPYLHLPVQ 296
            L  +     DL  +  E+ G+ ++   +    D++    +   +L    +  YL +  +
Sbjct: 466 HLGTDHKHTIDLYKAAREVPGIKKVLIASGVRYDLAIENPEYIRELAKHHVGGYLKIAPE 525

Query: 297 SGSDRILKSMNRRH--TAYEYRQIIDRI-RSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
              +  L  M +    T  +++++ D+  +    +  +   FI   PG TD+D       
Sbjct: 526 HTEEGPLSKMMKPGMGTYDKFKELFDKFSKEAGKEQFLIPYFISAHPGTTDEDMVNLALW 585

Query: 354 VD--KIGYAQAFSFKYSP 369
           +   K    Q  +F  SP
Sbjct: 586 LKGQKFKLDQVQNFYPSP 603


>gi|326791275|ref|YP_004309096.1| radical SAM protein [Clostridium lentocellum DSM 5427]
 gi|326542039|gb|ADZ83898.1| Radical SAM domain protein [Clostridium lentocellum DSM 5427]
          Length = 580

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 52/360 (14%), Positives = 123/360 (34%), Gaps = 57/360 (15%)

Query: 28  FVKSYGCQ------------MNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREK 75
           ++KSY C+            +N  ++  ++ ++           +  D+I + +C+I   
Sbjct: 21  YIKSY-CKDYESHITILETTINNNETEMIKAIYK----------EKPDIIGI-SCYIWN- 67

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135
                   +  ++ L  +  K      +V+ G     EG+ +     I  V+ G      
Sbjct: 68  --------MSFVKTLIPTLRKLLPHTTLVLGGPEVSYEGDHLFEALDIDLVMEGEGEETW 119

Query: 136 LPELLERARFGKRVVDTDYSVEDK--------------FERLSIVDGGYNRKRGVTAFLT 181
              L  R +    + D +  +  K               + L  V            +  
Sbjct: 120 KQYLDYRIQGKGSLQDINGIIYKKENVIIKNAPRQPLDLKHLPFVYDSLEGLEHKIIYYE 179

Query: 182 IQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD 241
              GC   C +C+   T        L +V       ++  V ++  + +  N        
Sbjct: 180 ASRGCPFNCQYCL-SSTHKGVRFVPLERVKIHLTYFLEQRVKQVKFVDRTFNTK------ 232

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
            +    +   + ++   G     +  +    + D +++        +    + VQS + +
Sbjct: 233 -KAYAMAIWEHIIANDNGSTNFHFEIAAEL-IDDDMLELLKGARNGLIQFEIGVQSTNMK 290

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
           +L++++R+    + ++I  +I+++  +I    D I G P E    FR + + V  +   Q
Sbjct: 291 VLEAISRKMPYEDIKEITRKIKAL-GNIHQHLDLIAGLPYEDYASFRNSFNDVIALRPEQ 349


>gi|116053077|ref|YP_793396.1| hypothetical protein PA14_65080 [Pseudomonas aeruginosa UCBPP-PA14]
 gi|296391768|ref|ZP_06881243.1| hypothetical protein PaerPAb_26604 [Pseudomonas aeruginosa PAb1]
 gi|115588298|gb|ABJ14313.1| putative radical SAM domain protein [Pseudomonas aeruginosa
           UCBPP-PA14]
          Length = 747

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 48/298 (16%), Positives = 97/298 (32%), Gaps = 47/298 (15%)

Query: 117 ILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGY---NRK 173
           ++++   V+V   P       E            + DY     + R+     G       
Sbjct: 325 LVQKHGEVDVWFNPPPIPMSTE------------EMDYVFGMPYARVPHPAYGKAKIPAY 372

Query: 174 RGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDN--GVCEIT--LL 228
             +   + I  GC   CTFC +    G  I +RS   ++ E  ++ D   G   +   L 
Sbjct: 373 EMIRFSVNIMRGCFGGCTFCSITEHEGRIIQNRSHDSIIREIEEMRDKVPGFTGVVSDLG 432

Query: 229 GQNVNAWR----------------------GKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
           G   N +R                       + LD +  +  +L      + G+ ++   
Sbjct: 433 GPTANMYRIACKSPDIERHCRKPSCVFPGICENLDTDHSSLIELYRKARALPGVKKILIA 492

Query: 267 TSHPRDMSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRR--HTAYEYRQIIDRI 322
           +    D++    +   +L    +  YL +  +      L  M +    T   ++Q+ ++ 
Sbjct: 493 SGLRYDLAVESPEYVKELVTHHVGGYLKIAPEHTERGPLDKMMKPGIGTYDRFKQMFEKF 552

Query: 323 -RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            +    +  +   FI   PG TD+D       + + G+       + P      + M 
Sbjct: 553 SKEAGKEQYLIPYFIAAHPGTTDEDMMNLALWLKRNGFRADQVQAFYPSPMATATAMY 610


>gi|332702416|ref|ZP_08422504.1| Radical SAM domain protein [Desulfovibrio africanus str. Walvis
           Bay]
 gi|332552565|gb|EGJ49609.1| Radical SAM domain protein [Desulfovibrio africanus str. Walvis
           Bay]
          Length = 435

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 59/314 (18%), Positives = 103/314 (32%), Gaps = 45/314 (14%)

Query: 92  NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVV---GPQTYYRLPELLERARFGKR 148
              +K      VV  G  A  + E   R  P V+ V+   G  +   L   LERA  G  
Sbjct: 92  AREVKRVSKATVVCGGMHASLDPEHFNR--PEVDYVIQGLGKASLRELVGALERAEDGTG 149

Query: 149 VVDTDYS--------VEDKFERLSIVDGGYNRKRGV---------------TAFLTIQEG 185
           +     +           KF    +++    R   V                 F+    G
Sbjct: 150 ITGVARTSPGKPLALTPRKFSSRDLMEEQPPRYDLVAGYRDQYVLSSLGLKVGFVASAYG 209

Query: 186 CDKFCTFCVVP-YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK 244
           C   C FC +     G  ++ S+  V+ + R L D  +  + L+  N          G+ 
Sbjct: 210 CTHACGFCAIRAQAGGRYLTHSIPAVLRDMRLLGD--IPVVRLIDANTF--------GDP 259

Query: 245 CTFSDLLYSLSEIKGLVRLRYTT-SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
              ++L  ++ +     R+     S        L+       +L   + +  +  SD  L
Sbjct: 260 KHAAELAQAIIDAGLGKRIIADVRSDTVVRHPELMALWRKAGLLA--VIIGFEDLSDEGL 317

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
             + +R+T     + +  +  +   I I  DFI   P  ++ DF      +  +      
Sbjct: 318 ARLGKRNTWRNNVEAVSILHGL--GIRIVGDFIAS-PDYSEADFEHLGKTIADLHIDLPM 374

Query: 364 SFKYSPRLGTPGSN 377
               +P  GTP  N
Sbjct: 375 VSVLTPLPGTPLYN 388


>gi|237719986|ref|ZP_04550467.1| coproporphyrinogen III oxidase [Bacteroides sp. 2_2_4]
 gi|229450538|gb|EEO56329.1| coproporphyrinogen III oxidase [Bacteroides sp. 2_2_4]
          Length = 335

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 46/196 (23%), Positives = 76/196 (38%), Gaps = 13/196 (6%)

Query: 222 VCEITLLGQNVNAWR---GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPR--DMSDC 276
           + +  L G+++       G     EK  F  +  ++ E  GL   +  T      D+S  
Sbjct: 1   MRKEYLKGEDIETIYFGGGTPSQLEKEDFEQIFDTIREHYGLNHCQEITLEANPDDLSQE 60

Query: 277 LIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFI 336
            ++    L      L + +Q+  D  LK + RRH A    + IDR R       IS D I
Sbjct: 61  YLEMLSSLP--FNRLSMGIQTFDDATLKLLRRRHNARTAIEAIDRCRKADFQ-NISIDLI 117

Query: 337 VGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ-----VDENVKAERL 391
            G PGET + +   +     +      ++       TP  NML+Q     VDE+   +  
Sbjct: 118 YGLPGETKERWENDLRQAISLNVEHISAYHLIYEEDTPIYNMLKQHQISEVDEDSSLDFF 177

Query: 392 LCLQKKLREQQVSFND 407
             L + L++      +
Sbjct: 178 TSLIEHLQKAGFEHYE 193


>gi|17231799|ref|NP_488347.1| hypothetical protein all4307 [Nostoc sp. PCC 7120]
 gi|17133443|dbj|BAB76006.1| all4307 [Nostoc sp. PCC 7120]
          Length = 522

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 48/305 (15%), Positives = 107/305 (35%), Gaps = 36/305 (11%)

Query: 79  KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVV---------- 128
           +++  LG I+       K   D  VVV G       E++ +  P   ++           
Sbjct: 118 ELWRNLGLIKRGLKRAAKYHPDARVVVGGGAVSVFYEQLGKSLPNGTIISVGEGETLLEK 177

Query: 129 ---GPQTYYRLPELLERARFGKRVVDTDYSVEDK-------FERLSIVDGGYNRKRGVTA 178
              G +       ++  A+  +R++    +  +K        ER+      Y +++    
Sbjct: 178 FLSGKEFRDERCYVVGEAKPRQRLIHEQPTPLEKSACNYDYIERIWPEFNYYLQEQDFYI 237

Query: 179 FLTIQEGCDKFCTFCVVPYTRGIEISR-SLSQVVDEARKLIDNGVCEITLL-GQNVNAWR 236
            +  + GC   C +CV     G ++      +VV E R+L + G+        Q + A +
Sbjct: 238 GVQTKRGCPHNCCYCVYTVVEGKQVRINPADEVVAEIRQLYNRGIRNFWFTDAQFIPARK 297

Query: 237 GKGLDGEKCTFSDLLYSLSEI--KGLVRLRY-TTSHPRDMSDCLIKAHGDLDVLMPYLHL 293
                       D +  L +I   G+  + +       +++  L +        M Y  +
Sbjct: 298 FID---------DAVELLQKIVDSGMTDIHWAAYIRADNLTPELCELMAKTG--MNYFEI 346

Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
            + SGS  +++ M   +      Q    +++   +  +S ++      E  +  R T+  
Sbjct: 347 GITSGSQELVRKMRMGYNLRTVLQNCRDLKAAGFNDMVSVNYSFNVIDERPETIRQTIAY 406

Query: 354 VDKIG 358
             ++ 
Sbjct: 407 HRELE 411


>gi|308048107|ref|YP_003911673.1| Radical SAM domain protein [Ferrimonas balearica DSM 9799]
 gi|307630297|gb|ADN74599.1| Radical SAM domain protein [Ferrimonas balearica DSM 9799]
          Length = 786

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 60/315 (19%), Positives = 109/315 (34%), Gaps = 58/315 (18%)

Query: 176 VTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDN--GVCEIT--LLGQ 230
           +   + I  GC   C+FC +    G  I SRS   ++DE  ++ +   G   +   L G 
Sbjct: 379 IKTSINIMRGCFGGCSFCSITEHEGRIIQSRSQESILDEIEQIKEKVPGFTGVISDLGGP 438

Query: 231 NVNAWR----------------------GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
             N ++                         +D +     +L  +  EI G+ R+   + 
Sbjct: 439 TANMYKLRCKSPKAEATCRRLSCIYPDICGHMDTDHTPTIELYRAAREIPGIKRIFVASG 498

Query: 269 HPRDMSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR--QIIDRI-R 323
              D++    +   +L    +  YL +  +   +  L  M +      YR  ++ DR  +
Sbjct: 499 VRYDLAVEDPRYVKELVQHHVGGYLKIAPEHTEEGPLSIMMKPGMGSYYRFKEMFDRFSK 558

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVD--KIGYAQAFSFKYSPRLGT-----PGS 376
               +  +   FI   PG +D+D       +   K    Q  +F  SP          G 
Sbjct: 559 EAGKEQYLIPYFISAHPGASDEDMVNLAMWLKRNKFRLDQVQNFYPSPLANATTVWHTGK 618

Query: 377 NMLEQV---DENV------KAERL-LCLQK--------KLREQQVSF-NDACVGQIIEVL 417
           N L +V    E+V      +  RL   L +         +RE  ++      +G   + L
Sbjct: 619 NSLRKVTHDSEDVPVAKGGRQRRLHKALLRYHDTDNWPIIREGLLNIGMGHLIGSGPDCL 678

Query: 418 IEKHGKEKGKLVGRS 432
           +   G+      GR+
Sbjct: 679 VPAEGRRPAHRGGRT 693


>gi|239941056|ref|ZP_04692993.1| coproporphyrinogen III oxidase [Streptomyces roseosporus NRRL
           15998]
 gi|239987535|ref|ZP_04708199.1| coproporphyrinogen III oxidase [Streptomyces roseosporus NRRL
           11379]
 gi|291444496|ref|ZP_06583886.1| coproporphyrinogen III oxidase [Streptomyces roseosporus NRRL
           15998]
 gi|291347443|gb|EFE74347.1| coproporphyrinogen III oxidase [Streptomyces roseosporus NRRL
           15998]
          Length = 413

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 45/212 (21%), Positives = 78/212 (36%), Gaps = 32/212 (15%)

Query: 186 CDKFCTFCVV--------PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG 237
           C   C +C            + G   SR      + A  LI+       +LG +    R 
Sbjct: 42  CATRCGYCDFNTYTATELRGSGGALASRD-----NYAVHLIEEVRRARKVLGDDPRPVRT 96

Query: 238 KGLDGEKCTF---SDLLYSLSEIKGLVRLRYTTSHPRDMSDC---------LIKAHGDLD 285
             + G   T    +DL+  L+ I    R  +  +   +++            ++A  +  
Sbjct: 97  VFVGGGTPTLLPAADLVRMLAAI----RDEFGLADDAEITTEANPESVDPAYLEALREGG 152

Query: 286 VLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDD 345
                +   +QS    +LK ++R HT       +   R+   D  ++ D I G PGE+DD
Sbjct: 153 --FNRVSFGMQSAKQHVLKILDRTHTPGRPEACVAEARAAGFD-HVNLDLIYGTPGESDD 209

Query: 346 DFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
           D+RAT+D     G     ++      GT  + 
Sbjct: 210 DWRATLDAAIGAGPDHVSAYALIVEEGTQLAR 241


>gi|118581877|ref|YP_903127.1| putative radical SAM protein [Pelobacter propionicus DSM 2379]
 gi|118504587|gb|ABL01070.1| conserved hypothetical radical SAM protein [Pelobacter propionicus
           DSM 2379]
          Length = 313

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 42/231 (18%), Positives = 78/231 (33%), Gaps = 36/231 (15%)

Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNG--VCEITLLGQNVNAWRGKGLDGEKC 245
             C +C       +  S   +Q V    + +  G       L  +    +  K  +    
Sbjct: 51  GGCVYC-----NNVSFSPKATQPVIPIEEQMAQGMAYHRTRLGSEKFIIYFQKYTNTYAS 105

Query: 246 T--FSDLLYSLSEIKGLVRLRYT--TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
               +D  +   +   ++ +          D +  L+        +   L L +QS +D 
Sbjct: 106 LDVLADFYHRALDHPDVLGISVGTRPDALSDEALELLTEIARTRYVC--LELGLQSINDD 163

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
           IL  +NR HT  EY + +   R+   +  I +  I GFPGET + F  + +L+  +    
Sbjct: 164 ILADINRGHTLDEYLETVQ--RAAGRNFDICTHLIYGFPGETREGFLKSANLIASLPVDS 221

Query: 362 AFSFKYSPRLGTP---------------------GSNMLEQVDENVKAERL 391
               +     GT                       ++ LE++   V  +RL
Sbjct: 222 IKLHQLHAVEGTELARRYFRGEYRPLKIEEYIATAADFLERLPGRVTIQRL 272


>gi|116625481|ref|YP_827637.1| radical SAM domain-containing protein [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116228643|gb|ABJ87352.1| Radical SAM domain protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 446

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 37/192 (19%), Positives = 74/192 (38%), Gaps = 22/192 (11%)

Query: 179 FLTIQEGCDKFCTFC-VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG 237
           +     GC   C  C VVP   G         V+++ R+ +  G   IT           
Sbjct: 169 YTEASRGCKHLCRHCPVVPVYNGRFRIVQADIVLEDIRRQVAAGAAHITF---------- 218

Query: 238 KGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL-----DVLMPYLH 292
               G+   F+   +++  ++ L R     S+   +    +  H DL     +    ++ 
Sbjct: 219 ----GDPDFFNGPGHAVPIVEALHREWPWLSYDVTIKVEHLLKHRDLLPVLKETNCAFVT 274

Query: 293 LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352
             ++S  D +L  + + HT   + + +  +R+V  D+ +S  FI   P  T + +R  + 
Sbjct: 275 SAIESLDDEVLVKLAKGHTRAGFLEALVLMRAV--DLPLSPTFIPFHPWTTLESYREFLR 332

Query: 353 LVDKIGYAQAFS 364
            + + G A   +
Sbjct: 333 TLAENGLASQIT 344


>gi|42524966|ref|NP_970346.1| Mg-protoporphyrin IX monomethyl ester oxidative cyclase
           [Bdellovibrio bacteriovorus HD100]
 gi|39577177|emb|CAE81000.1| Mg-protoporphyrin IX monomethyl ester oxidative cyclase
           [Bdellovibrio bacteriovorus HD100]
          Length = 523

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/203 (14%), Positives = 70/203 (34%), Gaps = 10/203 (4%)

Query: 179 FLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK 238
           ++ +  GC   C +C+         +  +   + + +KL+D G  +   + +  N     
Sbjct: 168 YVEVSRGCPYRCEYCL-SSLDKAVRNFDVPAFLADMQKLMDRGARQFKFIDRTFNLS--- 223

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
                  T + +L    E   L    +    P  +   + +             + +Q+ 
Sbjct: 224 -----PSTCTQILEFFLERVHLGLFLHFEMVPDRLPTEIRELIKKFPAGALQFEIGIQTW 278

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           +  + + ++RR+   + +    R  +    +   +D IVG PGE    F    D + ++ 
Sbjct: 279 NTDVARLVSRRNDLEKVKDNF-RFLASETGVHTHADLIVGLPGEDIHSFARGFDTLAELR 337

Query: 359 YAQAFSFKYSPRLGTPGSNMLEQ 381
             +          G P +   ++
Sbjct: 338 PDEIQVGILKRLKGAPIARHDKE 360


>gi|251778618|ref|ZP_04821538.1| oxygen-independent coproporphyrinogen III oxidase [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
 gi|243082933|gb|EES48823.1| oxygen-independent coproporphyrinogen III oxidase [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
          Length = 379

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 87/224 (38%), Gaps = 18/224 (8%)

Query: 186 CDKFCTFCVVPYTRGIEI--SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
           C + C +C  P   G E   S  +  +  E +    +   +   +G       G     +
Sbjct: 18  CKQKCLYCDFPSYSGKEKFISGYMGALNKEIKDKASSYKIKSIFIG------GGTPSYLD 71

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTT-SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
           +     LL  ++ +     L +T   +P  +S+  +K     +  +  + + +QS    +
Sbjct: 72  EIELEKLLKCINTLTLGENLEFTIECNPGSLSEDKLKIMKKYN--VNRISMGLQSTKPSL 129

Query: 303 LKSMNRRHTAYEYRQIIDRIRSV-RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
           LK + R HT  E+       R V   +I I  D + G P ++ +D+R T++ + +     
Sbjct: 130 LKEIGRIHTFEEFENNYLLARKVGFKNINI--DLMFGLPNQSVEDWRKTLEKIIEFNPEH 187

Query: 362 AFSFKYSPRLGTPGSNMLEQ----VDENVKAERLLCLQKKLREQ 401
             ++      GT   N+  Q    +    K   +  L KK+ ++
Sbjct: 188 ISAYSLIIEEGTCFYNLYNQDKLNLPSEEKERDMYLLTKKILKE 231


>gi|82617405|emb|CAI64316.1| conserved hypothetical protein [uncultured archaeon]
          Length = 636

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 46/304 (15%), Positives = 98/304 (32%), Gaps = 41/304 (13%)

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SR 205
           +  +D  Y +    E              V   +T   GC   C+FC +   +G  I SR
Sbjct: 308 QEELDHVYELPFTRESHPSYKEPVPALDVVKFSITTHRGCFGSCSFCAISMHQGRMITSR 367

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS----------------- 248
           S+  VV EA +L      +  + G    +    G++ +K   S                 
Sbjct: 368 SIDSVVCEAERLTRIRGFKGIINGVGGPSANMYGMECKKWEKSGACKDKLCLYPEPCPSL 427

Query: 249 --------DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL--DVLMPYLHLPVQSG 298
                   +++  L  ++G+ ++        D++    +   +L    +   L +  +  
Sbjct: 428 DTSHAQTIEMMRRLRGVEGVAKIFVGYGVRYDLALLDEEYMEELCAHHVSGQLKVAPEHY 487

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA----ISSDFIVGFPGETDDDFRATMDLV 354
              +  +M +      + +  ++ R +   +     + +  I   PG T DD     + +
Sbjct: 488 IKEVTDAMRKPG-REVFERFAEKFREINKKLGKEQYLVTFLISSHPGCTMDDMIELAEYI 546

Query: 355 DKIGYAQAFSFKYSPRLGTPGSNM-----LEQVDENV---KAERLLCLQKKLREQQVSFN 406
                       ++P   T  + M          E +   + +R   +Q+ L   +   N
Sbjct: 547 RDKRMYTKQVQDFTPTPMTAATCMFYTGLDPFTGEEIYVARGQREKRMQRALLRYKDPEN 606

Query: 407 DACV 410
              V
Sbjct: 607 YKLV 610


>gi|327482403|gb|AEA85713.1| lipoyl synthase [Pseudomonas stutzeri DSM 4166]
          Length = 325

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 35/214 (16%), Positives = 75/214 (35%), Gaps = 10/214 (4%)

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           + +    E  S  + G     G   F+ + + C + C FC V + R   +     +  + 
Sbjct: 66  HKLHSVCEEASCPNLGECFSSGTATFMIMGDICTRRCPFCDVGHGRPNAL--DPDEPKNL 123

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
           A+ + D  +  + +   +    R    DG    F+D L  + ++   ++L       R  
Sbjct: 124 AQAIADMRLKYVVITSVD----RDDLRDGGAQHFADCLREIRKLSPSIQLETLVPDYRGR 179

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
            +  ++         P +         R+ KS            ++++ +   P +   S
Sbjct: 180 MEIALEITATEP---PDVFNHNLETVPRLYKSSRPGSDFEWSLDLLEKFKQRVPGVPTKS 236

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
             ++G  GETDD+    M  + +         +Y
Sbjct: 237 GLMLGL-GETDDEVIEVMQRMREHDIDMLTLGQY 269


>gi|150020087|ref|YP_001305441.1| radical SAM domain-containing protein [Thermosipho melanesiensis
           BI429]
 gi|149792608|gb|ABR30056.1| Radical SAM domain protein [Thermosipho melanesiensis BI429]
          Length = 591

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 41/185 (22%), Positives = 78/185 (42%), Gaps = 15/185 (8%)

Query: 177 TAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAW 235
            A L I  GC + C FC   Y       R+  +VV+ A+K+++  G  EI+LL  +    
Sbjct: 249 RAVLEISRGCTRGCRFCHAGYIYRPVRERTARKVVENAKKILNKTGYEEISLLSLSAM-- 306

Query: 236 RGKGLDGEKCTFSDLLYSLSEI--KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHL 293
                  +  T + ++  L     +  + L   ++     +  L+     +      + L
Sbjct: 307 -------DHSTLNKIVDMLLPYVNEKKISLSIPSTRVDAFNVELLTKIASVRK--RGITL 357

Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
             ++GS ++   +N+     E  +     +    +  I   F+VGFPGET++D R   +L
Sbjct: 358 APEAGSQKMRDKINKNIALDEILRSALEAKKAGWN-KIKLYFMVGFPGETEEDVREIGEL 416

Query: 354 VDKIG 358
           + +I 
Sbjct: 417 LKEIK 421


>gi|307728314|ref|YP_003905538.1| lipoic acid synthetase [Burkholderia sp. CCGE1003]
 gi|307582849|gb|ADN56247.1| lipoic acid synthetase [Burkholderia sp. CCGE1003]
          Length = 335

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 82/220 (37%), Gaps = 10/220 (4%)

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
           + +  ++++    E  S  + G    +G   F+ + + C + C FC V + R   +    
Sbjct: 70  KQILREHNLHTVCEEASCPNIGECFGKGTATFMIMGDKCTRRCPFCDVGHGRPDPL--DP 127

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
            +  + AR +    +  + +   +    R    DG    F + +    E+    R+   T
Sbjct: 128 EEPANLARTIAALKLKYVVITSVD----RDDLRDGGAAHFVECIRQTRELSPDTRIEILT 183

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
               D    L +A G L+   P +         R+ K            +++   +++ P
Sbjct: 184 P---DFRGRLDRALGILNAAPPDVMNHNLETVPRLYKEARPGSDYAHSLKLLKDFKALHP 240

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           D+A  S  +VG  GET+++    M  + +         +Y
Sbjct: 241 DVATKSGLMVGL-GETEEEILQVMRDLREHDVDMLTIGQY 279


>gi|291559717|emb|CBL38517.1| Fe-S oxidoreductase [butyrate-producing bacterium SSC/2]
          Length = 580

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 50/294 (17%), Positives = 102/294 (34%), Gaps = 25/294 (8%)

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +  I  +     K   D+ + + G     +  E+LRR P V  V+  +      E+L+  
Sbjct: 71  IEYIERVIREIHKLLPDVPIWLGGPEVSYDSREVLRRLPQVTGVMKGEGEVTFLEVLDHY 130

Query: 144 ---------------RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
                          R    +V+T +       ++  V            +     GC  
Sbjct: 131 HGKRDDLSKIPGLTYRNEDEIVETPWRPVMDLSKVPFVYEHIEDFEHKIIYYESSRGCPF 190

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS 248
            C++C+          R+LS V  E +  +D+ V ++  + +  N      ++  +    
Sbjct: 191 SCSYCL-SSIDKCLRFRNLSLVKKELQFFLDHKVPQVKFVDRTFNCRHDHAMEIWRYIKE 249

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
                     G+    +  +      D  I+   D+   +  L + VQS +   +  ++R
Sbjct: 250 HD-------NGITNFHFEVAADVLKDDE-IELISDMRPGLIQLEIGVQSTNIDTITEIHR 301

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           +    +   I+ RI +   +I    D I G P E  + F+ +   V ++   Q 
Sbjct: 302 KMDFKKVVDIVTRI-NAGHNIHQHLDLIAGLPYEDLESFKQSFQDVYEVRPEQL 354


>gi|188994877|ref|YP_001929129.1| hypothetical protein PGN_1013 [Porphyromonas gingivalis ATCC 33277]
 gi|188594557|dbj|BAG33532.1| putative Fe-S oxidoreductase [Porphyromonas gingivalis ATCC 33277]
          Length = 634

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 51/303 (16%), Positives = 102/303 (33%), Gaps = 56/303 (18%)

Query: 132 TYYRLPELLERARFGKRVVDTDYSVEDKFE-----RLSIVDGGYNRKRG--------VTA 178
             Y    +L+       VV+  +   +  +      L      + R +G        +  
Sbjct: 249 NRYEADRILQAVGDSTIVVNPPFPPMNTAQIDQSFDLPYTRLPHPRYKGKIISAYEMIKH 308

Query: 179 FLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDNGVCEITLL---GQNVNA 234
            + +  GC   C FC +   +G  I SRS + V+ E +++ +    +  L    G + N 
Sbjct: 309 SVNVHRGCFGGCAFCTISAHQGKFIASRSEASVLREVKEITEMEDFKGYLSDVGGPSANM 368

Query: 235 WRGKGLDGEKC-------------------TFSDLLYSLSEIKGLVRLRYTTSHPRDMSD 275
           ++ +G D   C                       LL  L +I    +++ +        D
Sbjct: 369 YKMQGYDLSICKRCKKPSCIHPNVCPNLNADHRPLLDLLRKIDKNPKIKKSFIGSGVRMD 428

Query: 276 CLIKAHGD-----------LDVLMPYLH----LPVQSGSDRILKSMNRRHTAYE--YRQI 318
            L+  + D            D+++ ++     +  +  SDR+L  M +        + + 
Sbjct: 429 LLLHNYKDKVLKKAADEYTEDLIVKHVSGRLKVAPEHSSDRVLNLMRKPPFRQFAEFTKR 488

Query: 319 IDRIRSVRPDIA--ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
             RI      +   +   FI   PG T++D      L  K+ +       ++P   T  +
Sbjct: 489 FQRINEA-HGLRQQLIPYFISSHPGCTEEDMAELAILTKKLDFKLEQIQDFTPTPMTLAT 547

Query: 377 NML 379
            M 
Sbjct: 548 EMY 550


>gi|170289429|ref|YP_001739667.1| oxygen-independent coproporphyrinogen III oxidase [Thermotoga sp.
           RQ2]
 gi|170176932|gb|ACB09984.1| oxygen-independent coproporphyrinogen III oxidase [Thermotoga sp.
           RQ2]
          Length = 374

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 38/228 (16%), Positives = 77/228 (33%), Gaps = 12/228 (5%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C K C +C          S    + +    + I+     +         + G        
Sbjct: 12  CKKKCVYCDFYSVA----SEDFEEYLSLVFEEIELYRDVLKESEIETVYFGGGTPSLVPP 67

Query: 246 TFSD-LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304
           +F + +L  L E+        TT      S    K      + +  + L VQS  D +LK
Sbjct: 68  SFLEKILEKLKEVSKKFSPLETTIEVNPESVDREKLRSYRKMGINRISLGVQSCDDGVLK 127

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
              R +     ++  + + +   ++    DFI+G PGETD+     +  +++        
Sbjct: 128 KCGRLYDEKMLKEKAELVLAEFDNVNF--DFILGLPGETDETLEKNLHFLEEFTPQHVSL 185

Query: 365 FKYSPRLGTPGSNMLEQ-----VDENVKAERLLCLQKKLREQQVSFND 407
           +       TP  ++L++      D +    R     + L+ +     +
Sbjct: 186 YFLEVDENTPLYSLLKKNLLTLPDSDEVERRHDVFVEFLKSRGFERYE 233


>gi|150015713|ref|YP_001307967.1| coproporphyrinogen III oxidase [Clostridium beijerinckii NCIMB
           8052]
 gi|149902178|gb|ABR33011.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Clostridium beijerinckii NCIMB 8052]
          Length = 375

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 37/213 (17%), Positives = 81/213 (38%), Gaps = 11/213 (5%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C +C  P   G E    +++ ++     I     E  +    +    G        
Sbjct: 13  CKQKCFYCDFPSYSGKEG--LMNEYIEALSNEILQKGKEYRISSIFIGG--GTPSYLNDL 68

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
           +   LL +L+++     L +T        +           +   + + +QS  + +LK 
Sbjct: 69  SLEKLLGTLNKLNLKDDLEFTVECNPGTLNEKNLNIMKEHNVNR-ISMGLQSTKNSLLKD 127

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           + R H+  E+ +     R +  +  I+ D + G P +T +D+  ++    ++      ++
Sbjct: 128 IGRIHSYEEFEENYFLARKLGFN-NINVDLMFGLPNQTIEDWECSLRKAAELELDHISAY 186

Query: 366 KYSPRLGTPGSNMLEQ----VDENVKAERLLCL 394
                 GT   N+ E+    + E  K ER++ L
Sbjct: 187 SLIIEEGTRFYNLYEEDKLNLPEEDK-ERIMYL 218


>gi|308272352|emb|CBX28958.1| hypothetical protein N47_B21040 [uncultured Desulfobacterium sp.]
          Length = 478

 Score = 69.2 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 40/207 (19%), Positives = 81/207 (39%), Gaps = 26/207 (12%)

Query: 175 GVTAFLTIQEGCDKFCTFCVVPY-TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVN 233
              A +    GC   C+FCVV +   G  + R++  VVDE   L                
Sbjct: 204 PGIACVRTSVGCPNRCSFCVVHFLANGKYLQRNIEDVVDEIASLHQE------------- 250

Query: 234 AWRGKGLDGEKCTFSDLLYSLSE--IKGLVRLRYTT---SHPRDMSDCLIKAHGDLDVLM 288
                 +D E  T +  +  L+E  I+  +R +Y +   S        L +        +
Sbjct: 251 --YIYFVDDETFTNAKRMSKLAEMLIERGIRKKYLSWARSDTICRHPELFELWKKAG--L 306

Query: 289 PYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFR 348
             +++  +S  ++ L   N+  T  + R+  + +R++  ++ I +  ++  P    +DF 
Sbjct: 307 ELVYIGFESLEEKNLTGYNKNATPSQNRKAREILRNL--NLNIHAALMIN-PDFDKEDFE 363

Query: 349 ATMDLVDKIGYAQAFSFKYSPRLGTPG 375
                ++++  A+     +SP  GT  
Sbjct: 364 IVHKTIEELSPAEFAFTVFSPPPGTEA 390


>gi|222100383|ref|YP_002534951.1| Oxygen-independent coproporphyrinogen III oxidase [Thermotoga
           neapolitana DSM 4359]
 gi|221572773|gb|ACM23585.1| Oxygen-independent coproporphyrinogen III oxidase [Thermotoga
           neapolitana DSM 4359]
          Length = 374

 Score = 69.2 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 38/228 (16%), Positives = 77/228 (33%), Gaps = 12/228 (5%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C K C +C          S    + +    + I+     +         + G        
Sbjct: 12  CKKKCVYCDFYSVA----SEDFEEYLSLVFEEIELYRDVLKESEIETVYFGGGTPSLVPP 67

Query: 246 TFSD-LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304
           +F + +L  L E+        TT      S    K      + +  + L VQS  D +LK
Sbjct: 68  SFLEKILEKLKEVSKKFSPLETTIEVNPESVDREKLRSYRKMGINRISLGVQSCDDGVLK 127

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
              R +     ++  + + +   ++    DFI+G PGETD+     +  +++        
Sbjct: 128 KCGRLYDEKMLKEKAELVLAEFDNVNF--DFILGLPGETDETLEKNLHFLEEFTPQHVSL 185

Query: 365 FKYSPRLGTPGSNMLEQ-----VDENVKAERLLCLQKKLREQQVSFND 407
           +       TP  ++L++      D +    R     + L+ +     +
Sbjct: 186 YFLEVDENTPLYSLLKKNLLTLPDSDEVERRHDVFVEFLKSRGFERYE 233


>gi|225873469|ref|YP_002754928.1| radical SAM domain protein [Acidobacterium capsulatum ATCC 51196]
 gi|225791496|gb|ACO31586.1| radical SAM domain protein [Acidobacterium capsulatum ATCC 51196]
          Length = 494

 Score = 69.2 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 58/317 (18%), Positives = 112/317 (35%), Gaps = 30/317 (9%)

Query: 62  ADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRS 121
           AD+++++   ++  A +   + L R R      +  G     +                 
Sbjct: 66  ADVVLISAMLVQRGAVD---ALLARCRERGLRTVIGGPITSSLAPS------------ML 110

Query: 122 PIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNR-KRGVTAFL 180
           P  ++V+G +    + +L                     +R  + D    R KR  T  +
Sbjct: 111 PATHIVIG-EAEEIVSDLARDIENNTARPVYQACERPLLDRCPLPDLSLIRMKRYNTMTI 169

Query: 181 TIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
               GC   C FC +    G +  ++ + QV+ E  +L   G  +   L  +        
Sbjct: 170 QCSRGCPFQCEFCDIIEIYGRKPRTKPIPQVLAELDQLYAAGWRDSVFLVDD-------N 222

Query: 240 LDGEKCTFSDLLYSLSEIKGL--VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQS 297
             G K     LL +LS+ +       R+ T    +++D L   HG        + L +++
Sbjct: 223 FIGHKPRAKALLAALSDWQADHGFPFRFITEASLNLADDLDLLHGMQAAQFTSVFLGIET 282

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSV-RPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
            ++  L +  +       R +++ IR + R  I +   FI+GF  + +D F   +D +  
Sbjct: 283 PNESSLLASGKLQNTR--RDLVESIRRIQRRGIEVMGGFILGFDTDREDIFDRLVDFIQT 340

Query: 357 IGYAQAFSFKYSPRLGT 373
                A         GT
Sbjct: 341 SAIPIAMVGLLQAIPGT 357


>gi|322418132|ref|YP_004197355.1| cobalamin B12-binding domain-containing protein [Geobacter sp. M18]
 gi|320124519|gb|ADW12079.1| cobalamin B12-binding domain protein [Geobacter sp. M18]
          Length = 435

 Score = 69.2 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 52/281 (18%), Positives = 97/281 (34%), Gaps = 27/281 (9%)

Query: 99  GDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVED 158
             + V++ G       +E   R    +VVVG +    L ++L+    G+           
Sbjct: 85  RGVKVMLGGPHPTVLPDE--ARLHADSVVVG-EAESVLAKVLDDVERGE------LQPFY 135

Query: 159 KFERLSIVDGGYNRKRGVTAFLT----IQEGCDKFCTFCVVPYTRG-IEISRSLSQVVDE 213
             E L +    + R+     ++        GC   C FC  P   G     R + +VV  
Sbjct: 136 HGELLPVDGAPFPRRDLAPGYVFRSFFTSRGCPYDCKFCATPELHGSRMRYRPIGEVV-- 193

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
            ++L             +     G  +      F ++  SLS I+  V      S     
Sbjct: 194 -KELSSCNHKMWFCTDAD---SWGPDVPRYTALFREMATSLSGIR-WVGETSIASVQHQA 248

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR-PDIAIS 332
            + ++K       LM    +  +S S+  LK      T     +  + ++ +R   I + 
Sbjct: 249 GEEMLK-WAHRSGLMQVW-IGWESFSEATLKEYGA--TPKMLYEREEALKKIRGNGIDVV 304

Query: 333 SDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
              ++G   E+ D++R  +D+ D++           P  GT
Sbjct: 305 LFIMLGSKNESLDEYRRVLDMCDRLAMT-PHPVMVVPYPGT 344


>gi|253576642|ref|ZP_04853970.1| radical SAM domain-containing protein [Paenibacillus sp. oral taxon
           786 str. D14]
 gi|251844056|gb|EES72076.1| radical SAM domain-containing protein [Paenibacillus sp. oral taxon
           786 str. D14]
          Length = 603

 Score = 69.2 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 59/361 (16%), Positives = 111/361 (30%), Gaps = 51/361 (14%)

Query: 95  IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER------------ 142
            K   ++ +V+ G     + +  + R P V+ +V          LL+             
Sbjct: 78  KKVLPEVKIVLGGPEVSYDTKYWMERIPEVDFIVMGDGEETFHHLLQELSGEQKFHFVFG 137

Query: 143 --ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGV---TAFLTIQEGCDKFCTFCVVPY 197
              R G+ VV      +     L            +     +     GC   C FC+   
Sbjct: 138 AAYRKGEEVVLNPPRPKSDLNTLPSPHRFPEDIPNLGKRIVYFETSRGCPFSCQFCLSSI 197

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257
             G      + +V  +   LI++G   I  L +  N  R               + ++  
Sbjct: 198 EVG-VRYYDIERVKSDILYLIEHGAKIIKFLDRTFNINR-------NYAMEMFEFLINNH 249

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
           +G V     T+    M   ++    +     +     + VQS +D   + + RR    + 
Sbjct: 250 QGCVFQFEITADI--MRPEVLDYLAENAPPGIFR-FEIGVQSTNDPTNELVKRRQNFTKL 306

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT-- 373
            + + +I+     IA   D I G P E    FR T + V  +   +          GT  
Sbjct: 307 TRTVTKIKES-GKIAQHLDLIAGLPEEDYATFRKTFNDVFALRPEELQLGFLKMLRGTGL 365

Query: 374 ------PGSNMLEQVDENVKAE---------RLLCLQKKLREQQVSFNDACVGQIIEVLI 418
                      ++     + +          RL  L+  L +    +N   +   +E L+
Sbjct: 366 RNDAEKYNYVFMDHAPYEILSNNVLPFEDVIRLKRLEDVLEKY---WNAHRMDHTVEYLV 422

Query: 419 E 419
            
Sbjct: 423 T 423


>gi|222054999|ref|YP_002537361.1| radical SAM protein [Geobacter sp. FRC-32]
 gi|221564288|gb|ACM20260.1| Radical SAM domain protein [Geobacter sp. FRC-32]
          Length = 451

 Score = 69.2 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 69/412 (16%), Positives = 130/412 (31%), Gaps = 92/412 (22%)

Query: 43  RMEDMFFSQGY---------ERVN----SMDDADLIVLNTCHIREKAAEKVYSFLGRIRN 89
            +       G+         E  +     +  AD++      I         + + +   
Sbjct: 28  YIAASLEQAGHKVQVIDLQCEPSDLDPFHIKAADVV-----GITSDT-----TRIEKAME 77

Query: 90  LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA------ 143
           +       G    VV+ G   Q   EEIL R+  V+ +V  +     P LL+        
Sbjct: 78  IARQAAAIGRP--VVMGGPHPQFMAEEIL-RTGHVHCIVKGEGDLTFPRLLQNLERREDL 134

Query: 144 --------RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTA--------FLTIQEGCD 187
                   R GK++V+T        E LS+           +A         +    GC 
Sbjct: 135 AEVEGIIFRDGKKLVETANGPVPDPELLSLPARHLLDLGKYSASLNGIPLTPVVTSRGCP 194

Query: 188 KFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKC 245
             C+FC      G    SRS   V+ E  ++ +  G   +  +  N              
Sbjct: 195 GACSFCSSSSFFGRRWRSRSPESVLAELDEVYNRYGFRAVAFVDDN-------------- 240

Query: 246 TFSDLLYSLSEIKGLVRLR--------YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQS 297
            FS     +  I   +R R        ++       +  +++A          + L ++S
Sbjct: 241 -FSLSPERVIAIADGIRARSYDLQWWNFSRVDNIVGNPQMVQAMAQAG--SKTVFLGIES 297

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
             D  LK++ + +      + +  ++     I +   +I+G   ET  D   T+ +   +
Sbjct: 298 ADDESLKTLGKENQGEATAKAVKLLQEN--GIEVFGSYILGHLNETAKDVERTIQMAVDL 355

Query: 358 GYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDAC 409
               A     +P  GTP                   L++++  ++  F DA 
Sbjct: 356 NTNIAQFSILTPYPGTPLYR---------------ELKERIFLKRWKFYDAL 392


>gi|56750748|ref|YP_171449.1| hypothetical protein syc0739_d [Synechococcus elongatus PCC 6301]
 gi|56685707|dbj|BAD78929.1| hypothetical protein [Synechococcus elongatus PCC 6301]
          Length = 618

 Score = 68.8 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 48/306 (15%), Positives = 100/306 (32%), Gaps = 38/306 (12%)

Query: 79  KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPE 138
           +++  LG I+  +    +   ++  VV G       E++  +     +V    +      
Sbjct: 118 ELWRNLGLIKRAQKRAQRYCPEVRTVVGGGAVSVFYEQLGDKLAKGTIV----SVGEGET 173

Query: 139 LLERARFGKRVVDTDYSV------------------------EDKFERLSIVDGGYNRKR 174
           LLE+   G+ + +    V                         D  E +    G Y    
Sbjct: 174 LLEKLLRGESIANERCYVAGAEKPRSRLIHEQPTPLIKTACNYDYIESIWPAFGYYLADG 233

Query: 175 GVTAFLTIQEGCDKFCTFCVVPYTRGIEISR-SLSQVVDEARKLIDNGVCEITLLGQNVN 233
                +  + GC   C +CV     G ++     ++VV E R+L D GV           
Sbjct: 234 DFYIGVQTKRGCPHNCCYCVYTVVEGKQVRVNPAAEVVAEMRQLYDRGVRNFWFTDAQFI 293

Query: 234 AWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY-TTSHPRDMSDCLIKAHGDLDVLMPYLH 292
             R    D +      L   L+   GL  + +       ++   L +        M Y  
Sbjct: 294 PARRYIEDAK----VLLREILAA--GLTDIHWAAYIRADNLDPELAELMVQTG--MNYFE 345

Query: 293 LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352
           + + SGS  +++ M   +      +    +++   +  +S ++      E ++  R T+ 
Sbjct: 346 IGITSGSQELVRKMRMGYNLRTVLENCRALKAAGFNDLVSVNYSFNVIDEREETIRQTIA 405

Query: 353 LVDKIG 358
              ++ 
Sbjct: 406 YHRELE 411


>gi|289804696|ref|ZP_06535325.1| hypothetical protein Salmonellaentericaenterica_09527 [Salmonella
           enterica subsp. enterica serovar Typhi str. AG3]
          Length = 88

 Score = 68.8 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 8/88 (9%)

Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA------WRGKGLDGE-- 243
           FC++P  RG  +SR +  V+ EA++L+D GV EI ++ Q+ +A       R    +GE  
Sbjct: 1   FCIIPSMRGDLVSRPIGDVLSEAKRLVDAGVKEILVISQDTSAYGVDVKHRTGFHNGEPM 60

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPR 271
           K +   L   LS++    RL Y   +P 
Sbjct: 61  KTSMVSLCEQLSKLGVWTRLHYVYPYPH 88


>gi|218782584|ref|YP_002433902.1| radical SAM domain protein [Desulfatibacillum alkenivorans AK-01]
 gi|218763968|gb|ACL06434.1| Radical SAM domain protein [Desulfatibacillum alkenivorans AK-01]
          Length = 460

 Score = 68.8 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 45/217 (20%), Positives = 84/217 (38%), Gaps = 19/217 (8%)

Query: 166 VDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCE 224
            +   N ++     +     C   C +C   + +G    RS   V DE   L+   GV E
Sbjct: 186 AERFANVRKNRYMPVFTSRSCPYQCIYCHRIFGKG-FRPRSPENVADEIEALVRRHGVRE 244

Query: 225 ITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLI--KAHG 282
           I ++    N              ++   ++ ++     L+   S P  M   L+  +   
Sbjct: 245 IEIVDDIFN------------LNAERAEAICDLIISRGLKIKISFPNAMRADLLNFRLLK 292

Query: 283 DLDVL-MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPG 341
            L    + +  + V++GS R+ K + +     +  + I+    +   I     F++GFP 
Sbjct: 293 KLKKAGVHFSGIAVETGSPRLQKLIKKNLDLTKVNESINMAFDL--GITTVGFFMLGFPS 350

Query: 342 ETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           ET D+  AT+D   +     A  F  +P  GTP  ++
Sbjct: 351 ETRDELLATVDFACRSRLNFATFFVVTPFEGTPLYDL 387


>gi|134046052|ref|YP_001097538.1| radical SAM domain-containing protein [Methanococcus maripaludis
           C5]
 gi|132663677|gb|ABO35323.1| Radical SAM domain protein [Methanococcus maripaludis C5]
          Length = 510

 Score = 68.8 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 57/391 (14%), Positives = 136/391 (34%), Gaps = 56/391 (14%)

Query: 125 NVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGG----YNRKRGVTAFL 180
           +V+        L  LL+     ++V  T     ++ +  + +       +     + A +
Sbjct: 128 DVISEGDLDAVLHNLLKNNFNAEKVDGTRLRTYNELDEFARIGAKIVKLHPNYPNIIAEI 187

Query: 181 TIQEGC----DKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR 236
               GC       C+FC  P   G    R+   +++E R L + G+    +  Q      
Sbjct: 188 ETYRGCARAFSGGCSFCTEPRRYGSPKFRNSRDIIEEVRNLYEYGIKYFRIGRQ---PCM 244

Query: 237 GKGLDGEKCTFSDLLYSLSEIKGLVRLR--YTTSHPRDMSDCLIKAHGDLDV-------- 286
              L  +  T    + ++ EI+ L +     +      + +         +         
Sbjct: 245 FSYLAKDVETTDVPVPNVLEIEKLFKGITSVSNPDVLHIDNANPSVIARHEKEGREIAKI 304

Query: 287 LMPY------LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV--------RPDIAIS 332
           L+ Y          V+S  ++++          +  + +  +  +         P +   
Sbjct: 305 LVRYCTPGNVAAFGVESFDEKVISKNCLLTEPEDVLKAVGILNEIGGKRGENGMPYLLPG 364

Query: 333 SDFIVGFPGETDDDFRATMDLVDKIGYA------QAFSFKYSPRLGTPGSNMLEQVDENV 386
            + + G  GE++D F    D +++I Y       +    +  P  GT  +  ++ V++  
Sbjct: 365 INLLSGLKGESNDTFEINYDYLNEI-YDSGNMLRRINIRQVVPFFGTDLT--VKDVEKA- 420

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIE-------VLIEKHGKEKGKLVGR--SPWLQS 437
             +R     K   + +   ++  + +++        VL+E   ++     GR    +   
Sbjct: 421 -KKRKNLFLKFKEKIRTEIDNPMLKRMLPTETILKNVLVE-VKEKNDLYFGRQFGSYPIL 478

Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           + +  KN  IG  + +R+T     ++ G++V
Sbjct: 479 IGIAEKNVEIGKFVDIRVTGYGRRSITGKIV 509


>gi|299147866|ref|ZP_07040929.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Bacteroides sp. 3_1_23]
 gi|298514049|gb|EFI37935.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Bacteroides sp. 3_1_23]
          Length = 376

 Score = 68.8 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 47/237 (19%), Positives = 82/237 (34%), Gaps = 28/237 (11%)

Query: 186 CDKFCTFCVV-PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK 244
           C   C +C     TR    +R +  +  E     D       L G+++         G  
Sbjct: 11  CKTRCIYCDFYSTTRSELKTRYVRALCRELAMRKD------YLKGEDIETVYF----GGG 60

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMS---------DCLIKAHGDLDVLMPYLHLPV 295
                      +I   +R  Y  SH ++++            +K    L      + + +
Sbjct: 61  TPSQLEKEDFEQIFDTIRTHYGLSHCQEITLEANPDDLTSEYLKMLSSLP--FNRISMGI 118

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
           Q+  D  LK + RRH A+   + + R R       IS D I G PGE  + +   +    
Sbjct: 119 QTFDDPTLKLLKRRHNAHTAIEAVHRCREAGFQ-NISIDLIYGLPGENKERWENDLRQAI 177

Query: 356 KIGYAQAFSFKYSPRLGTPGSNMLEQ-----VDENVKAERLLCLQKKLREQQVSFND 407
            +      ++       TP  NML+Q     VDE+   +    L + L++      +
Sbjct: 178 SLNVEHISAYHLIYEEDTPIYNMLKQHQISEVDEDSSLDFFTLLIEHLQKAGFEHYE 234


>gi|298675283|ref|YP_003727033.1| radical SAM domain-containing protein [Methanohalobium evestigatum
           Z-7303]
 gi|298288271|gb|ADI74237.1| Radical SAM domain protein [Methanohalobium evestigatum Z-7303]
          Length = 560

 Score = 68.8 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 47/281 (16%), Positives = 91/281 (32%), Gaps = 39/281 (13%)

Query: 184 EGC--DKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD 241
            GC  +  C+FC  P+       R +  V+ E  +L ++G     +  Q          +
Sbjct: 194 RGCGRNTHCSFCTEPF-YKESKYRPVEDVIFEVSELYNSGARYFRIGRQPDLFTYQSIEN 252

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLD--------VLMPYLH- 292
               +  +   ++ ++   +R +        M +                  +++ Y   
Sbjct: 253 TNDISEPN-PEAIEKLYRGIRDKAPDLQVLHMDNVNPATIARYPDKSRKILDIILKYHTT 311

Query: 293 -----LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV--------RPDIAISSDFIVGF 339
                L ++S    ++ + N + T  E  + I  I            P+I    +F+ G 
Sbjct: 312 GDVCALGMESADPDVVSANNLKATPEEVLEAIKIINEKGGKCGYNGLPEILPGLNFVYGL 371

Query: 340 PGETDDDFRATMDLVDKIGYA------QAFSFKYSPRLGTPGSNMLEQVDENVKAERLLC 393
            GET   F+   D + K+ +       +    +     GTP     + V +      L  
Sbjct: 372 KGETKKTFKNNYDFLKKV-FDSGLLVRRINLRQVVTFPGTPIYG-KDTVTKKHNKLFLNH 429

Query: 394 LQKKLREQQVSFNDACV--GQIIE-VLIEKHGKEKGKLVGR 431
            +K             V  G I++ VL E    + G   GR
Sbjct: 430 KEKVREYIDKPMLRKLVPEGTILKNVLCE--VHKDGFTFGR 468


>gi|148258419|ref|YP_001243004.1| hypothetical protein BBta_7218 [Bradyrhizobium sp. BTAi1]
 gi|146410592|gb|ABQ39098.1| hypothetical protein BBta_7218 [Bradyrhizobium sp. BTAi1]
          Length = 674

 Score = 68.8 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 61/345 (17%), Positives = 110/345 (31%), Gaps = 49/345 (14%)

Query: 72  IREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ 131
            R+     V      + +      +E GD+++ +  C    + +E   R+  V       
Sbjct: 222 FRKVPEGFVELHADDLDSADEGAAREKGDVVIRLPSCEQVEQDKEAYARASRVLHRESNP 281

Query: 132 TYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTA------------- 178
              R   L++R       ++         E  S+ D  Y R    +              
Sbjct: 282 GNARP--LVQRHGDRDLWLNPPPIPLTMAEMDSVYDLPYARAPHPSYGDAKIPAWDMIKF 339

Query: 179 FLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDNGVCEITLL----GQNVN 233
            +TI  GC   CTFC +    G  I SRS   ++ E  ++ D       ++    G   N
Sbjct: 340 SVTIMRGCFGGCTFCSITEHEGRIIQSRSEESILQEIERIRDKTPGFTGVISDIGGPTAN 399

Query: 234 AWRGKGLDGE----------------------KCTFSDLLYSLSEIKGLVRLRYTTSHPR 271
            +R    D +                            L   + E+KG+ R+   +    
Sbjct: 400 MYRMACKDPKVEAACRRPSCVFPEICPNLNTSHDDLIRLYRKVREVKGVKRVMVASGVRY 459

Query: 272 DMSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRRH--TAYEYRQIIDRI-RSVR 326
           D++        +L    +  YL +  +      L  M +    T   ++++ D   R   
Sbjct: 460 DLAVESPAYIKELVTHHVGGYLKIAPEHTERGPLDKMMKPGIGTYDRFKEMFDAAAREAG 519

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGY--AQAFSFKYSP 369
               +   FI   PG +D+D       + +  Y   Q  +F  SP
Sbjct: 520 KKYYLIPYFIAAHPGTSDEDMMNLALWLKRNRYRADQVQTFLPSP 564


>gi|154249403|ref|YP_001410228.1| radical SAM domain-containing protein [Fervidobacterium nodosum
           Rt17-B1]
 gi|154153339|gb|ABS60571.1| Radical SAM domain protein [Fervidobacterium nodosum Rt17-B1]
          Length = 535

 Score = 68.8 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 47/240 (19%), Positives = 82/240 (34%), Gaps = 35/240 (14%)

Query: 169 GYNRKRGVTAFLTIQEGCDKF--CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEIT 226
            + R   V   + +  GC++   CTFC  P       SR +  +VDE   L  NGV    
Sbjct: 159 FHPRFPDVICEIEVSLGCERRTFCTFCTEPILHPKFFSRPVKDIVDEVEALYKNGVRAFR 218

Query: 227 LLGQNVNAWRGKGLDG---EKCTFSDLLYSL-SEIKGLVRLRYTTSHPRDMSDCLIKAHG 282
           L         G   +         ++L   + S+   +  L    ++P  ++  L K+  
Sbjct: 219 LGRSANIIAYGSDFNSGTINPNAVNELYNGIRSKCDDIRVLHTDNANPTYIAKNLEKSVK 278

Query: 283 DLDVLMPY------LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV--------RPD 328
            L+ ++ Y      L   V+S  + + K  N   T  +    +  +  +         P 
Sbjct: 279 ILESIVKYNTSGDILSFGVESFDEIVRKKNNIDGTVEDIDLAVKVVNEIGGLRDSGGVPK 338

Query: 329 IAISSDFIVGFPGETDDDFRATMD----------LVDKIGYAQAFSFKYSPRLGTPGSNM 378
           +    + I G  GET   +    +          L+ +I   Q   F      GTP   +
Sbjct: 339 LLPGINIIFGLFGETKKTYEINYNKLLWYLENDLLLRRINLRQIMIF-----PGTPLYYL 393


>gi|330834195|ref|YP_004408923.1| radical SAM domain-containing protein [Metallosphaera cuprina Ar-4]
 gi|329566334|gb|AEB94439.1| radical SAM domain-containing protein [Metallosphaera cuprina Ar-4]
          Length = 503

 Score = 68.8 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 52/306 (16%), Positives = 101/306 (33%), Gaps = 20/306 (6%)

Query: 71  HIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGP 130
            I +K      SF   I   +    K+ G  ++     V Q    E +     +N +V  
Sbjct: 114 GITKKEPINYKSFQDLINKPEVQEAKKRGVKMIAGGPSVWQWLWREDMIEKVGINTLVDG 173

Query: 131 QTYYRLPELLERARFGKRVVDTDY-SVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKF 189
           +    + +L +     + +    Y S ED      I D       G+   + I  GC + 
Sbjct: 174 EAEKIIGKLAQMILNNEELPRYVYVSGEDVPGIEDIPDIKGASVNGL---IEIMRGCARS 230

Query: 190 CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSD 249
           C FC V           L ++  E +  +  GV    +   +V  +   G+         
Sbjct: 231 CRFCSVTL--RPTRYYPLEKIERELQANVRAGVRHGVIHSDDVLFYGAVGIIPRPEPLIK 288

Query: 250 LLYSLSEIKG---LVRLRYTTSHPRDMSDCLIKAHGD--LDVLMPYL---HLPVQSGSDR 301
           L   + +                  +    LI    +   +          + +++GS R
Sbjct: 289 LHKMVKKYYKTIAWSHASLAAIRFSEEKYGLISKLSEIIYENGSQSYLGVEVGIETGSPR 348

Query: 302 ILKSMN----RRHTAYEYRQIIDRIRSVRPD--IAISSDFIVGFPGETDDDFRATMDLVD 355
           + K +       +    Y + ++    +  +  I  +   IVG P E ++D   T++LVD
Sbjct: 349 LAKEIMPAKSAPYKPDNYPETVNEAFKIMHEHSIIPAGTMIVGLPEEKEEDVIRTIELVD 408

Query: 356 KIGYAQ 361
            +   +
Sbjct: 409 SLKPYR 414


>gi|166363565|ref|YP_001655838.1| hypothetical protein MAE_08240 [Microcystis aeruginosa NIES-843]
 gi|166085938|dbj|BAG00646.1| hypothetical protein MAE_08240 [Microcystis aeruginosa NIES-843]
          Length = 520

 Score = 68.8 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 51/332 (15%), Positives = 112/332 (33%), Gaps = 36/332 (10%)

Query: 58  SMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEI 117
             D A++++L+   +      +    + +I   K          LV V G    +   E+
Sbjct: 62  EWDWAEIVILSGMIV------QRQDLIEQIHEAKQRGK------LVAVGGPYPTSIPHEV 109

Query: 118 LRRSPIVNVVVGPQTYYRLPELLERARFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRG 175
                  + ++  +    +P  +E    G+   V  T    +     +   D   + +  
Sbjct: 110 A----EADFLILDEGEITIPMFVEALARGETKGVFRTTEKPDVTITPIPRYDL-LDFEAY 164

Query: 176 VTAFLTIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVCEITLLGQNVNA 234
            +  +    GC   C FC +    G +  +++ +Q++ E   L + G      +  +   
Sbjct: 165 DSMSVQFSRGCPFQCEFCDIIVLYGRKPRTKTPAQLLKELDYLYELGWRRGVFMVDD--- 221

Query: 235 WRGKGLDGEKCTFSDLLYSL----SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY 290
                  G K     LL  L     E +   R     S        L++    +D     
Sbjct: 222 ----NFIGNKRNVKLLLKELKVWQEEHQYPFRFNTEASVDLAADPELMEMM--VDCYFDA 275

Query: 291 LHLPVQSGSDRILKSMNRR-HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           + L +++  +  L+   +  +T     + +++I  ++  +   + FI+GF GE       
Sbjct: 276 VFLGIETPDEESLQLTKKFQNTRSSLTETVEKI--IKAGLRPMAGFIIGFDGEKKGAADR 333

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
            ++ V++     A          T     LE+
Sbjct: 334 IINFVEEAAIPTALFGMLQALPNTALWTRLEK 365


>gi|217077251|ref|YP_002334969.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Thermosipho africanus TCF52B]
 gi|217037106|gb|ACJ75628.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Thermosipho africanus TCF52B]
          Length = 372

 Score = 68.8 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 74/222 (33%), Gaps = 10/222 (4%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C K C +C         +S     V +    L          L + +      G      
Sbjct: 21  CKKKCYYC-------DFVSYEEGSVENYINALSKEIELYGDYLKRGIRTLYIGGGTPSYI 73

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
               +   + +++  + L   T      S    KA    ++ +  L + +QS  + +LK 
Sbjct: 74  NEHYIEQLVKKLEKYLILEEFTIEVNPDSFDRQKAQFYKEIGVSRLSIGIQSFDNEVLKK 133

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
             R H + +  +  +  R    ++ +  DFI+G PGE+       +  + +        +
Sbjct: 134 AGRSHDSAQALKAYNVAREYFENVNV--DFIIGLPGESWSSIEEIVKFIRENHPPHISVY 191

Query: 366 KYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFND 407
                 GT  SN  +++ E     R   L   L+ +     +
Sbjct: 192 LLEIHEGTILSNFYKKIPEE-SYNRYEVLLDFLKSEGYERYE 232


>gi|300865840|ref|ZP_07110586.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506]
 gi|300336164|emb|CBN55744.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506]
          Length = 524

 Score = 68.8 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 46/305 (15%), Positives = 102/305 (33%), Gaps = 36/305 (11%)

Query: 79  KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVV---------- 128
           +++  LG I+       K   +  +VV G       E++ R  P   +V           
Sbjct: 118 ELWRNLGLIKRGLKRAQKYHPEARLVVGGGAVSVFYEQLGRSLPAGTIVSVGEGEALLEK 177

Query: 129 ---GPQTYYRLPELLERA-----RFGKRVVDTDYSVE--DKFERLSIVDGGYNRKRGVTA 178
              G         ++           ++  + + +    D  E +      Y + +    
Sbjct: 178 LLRGEDLSNERCYIVGETTPRDRLIHEKPANIEKTACNYDYIETIWPELQYYFQDQDFYV 237

Query: 179 FLTIQEGCDKFCTFCVVPYTRGIEISR-SLSQVVDEARKLIDNGVCEITLL-GQNVNAWR 236
            +  + GC   C +C+     G ++      +VV E R+L D G+        Q + A +
Sbjct: 238 GVQTKRGCPHNCCYCIYTVIEGKQVRINPADEVVAEMRQLYDRGIRNFWFTDAQFIPARK 297

Query: 237 GKGLDGEKCTFSDLLYSLSEI--KGLVRLRY-TTSHPRDMSDCLIKAHGDLDVLMPYLHL 293
                       D +  L +I   G+  + +       +++  L +        M Y  +
Sbjct: 298 YID---------DAVELLQKILDAGMTDIHWAAYIRADNLTPQLCELMAKTG--MNYFEI 346

Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
            + SGS  +++ M   +      +    +++   +  +S ++      ET D  R T+  
Sbjct: 347 GITSGSQELVRKMRMGYNLRVVLENCRDLKAAGFNDLVSVNYSFNVIDETFDTIRQTIAY 406

Query: 354 VDKIG 358
             ++ 
Sbjct: 407 HRELE 411


>gi|294629289|ref|ZP_06707849.1| oxygen-independent coproporphyrinogen III oxidase [Streptomyces sp.
           e14]
 gi|292832622|gb|EFF90971.1| oxygen-independent coproporphyrinogen III oxidase [Streptomyces sp.
           e14]
          Length = 413

 Score = 68.8 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 50/241 (20%), Positives = 87/241 (36%), Gaps = 25/241 (10%)

Query: 186 CDKFCTFCVV-PYTRGIEI-------SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG 237
           C   C +C    YT            SR      + A  L D       +LG +    R 
Sbjct: 42  CATRCGYCDFNTYTATELRGTGGVLASRD-----NYADTLADEVRLARKVLGDDPREVRT 96

Query: 238 KGLDGEKCTF---SDLLYSLSEIK---GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL 291
             + G   T    +DL+  L  I+   GL      T+     +          +     +
Sbjct: 97  VFVGGGTPTLLAAADLVRMLHAIRDEFGLAPDAEITTEANPETVDPAYLAALREGGFNRI 156

Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351
              +QS    +L+ ++R HT       +   R+   +  ++ D I G PGE+DDD+RA++
Sbjct: 157 SFGMQSARPHVLRILDRTHTPGRPEACVAEARAAGFE-HVNLDLIYGTPGESDDDWRASL 215

Query: 352 DLVDKIGYAQAFSFKYSPRLGTPGSN--MLEQVD---ENVKAERLLCLQKKLREQQVSFN 406
           D     G     ++      GT  +      +V    ++V A+R L  ++ L      + 
Sbjct: 216 DAALGAGPDHVSAYALIVEEGTQLARRIRRGEVPMTDDDVHADRYLIAEEVLSGAGFEWY 275

Query: 407 D 407
           +
Sbjct: 276 E 276


>gi|22255876|gb|AAM94801.1| CalU22 [Micromonospora echinospora]
          Length = 500

 Score = 68.8 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 35/216 (16%), Positives = 78/216 (36%), Gaps = 21/216 (9%)

Query: 177 TAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR 236
            A +    GC   C +C +   +    S  + +   ++ + +   +  +  LG +     
Sbjct: 231 YATMMTSLGCPFRCAYCHIAGEQEGNPSGPIGKFRVKSDERVLAEIETLKSLGVDNVFIE 290

Query: 237 GKGLDGEKCTFSDLLYSL-------SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMP 289
              L G+K     LL  +        ++ G+  +             +++A  D      
Sbjct: 291 DDSLLGDKRRGLRLLKKIQGAGVTICDLNGINLIHLL--KRWKPDHEVLEAMADAG--FT 346

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR----IRSVRPDIAISSDFIVGFPGETDD 345
            +++P +SG+   L+ + +  +     +  D     +        I  ++++G+P ET +
Sbjct: 347 QINMPFESGN---LRIIRKYASNKLNIEKADLPGLIVAMKEYGFQIYGNYMMGYPDETLE 403

Query: 346 DFRATMDLVDKI---GYAQAFSFKYSPRLGTPGSNM 378
           +   T+ L  +    G   A  F   P  G P  +M
Sbjct: 404 EIETTIQLAKEHVSYGLDAANFFLVVPLPGAPLFDM 439


>gi|317151807|ref|YP_004119855.1| Radical SAM domain-containing protein [Desulfovibrio aespoeensis
           Aspo-2]
 gi|316942058|gb|ADU61109.1| Radical SAM domain protein [Desulfovibrio aespoeensis Aspo-2]
          Length = 492

 Score = 68.8 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 37/242 (15%), Positives = 88/242 (36%), Gaps = 17/242 (7%)

Query: 134 YRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC 193
             +P LL+      R    D    +++   +        +R   A L    GC   C+FC
Sbjct: 176 TAMPALLDDLDTLPRPAW-DLLPMERYRAHNWHCFDDITRRQPYAVLYTSLGCPFKCSFC 234

Query: 194 VVPYTRGIE--ISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFSDL 250
            +    G      R +  V+DE   L++  G+  I +          +     +   + L
Sbjct: 235 CINALFGRNTIRYRGVDSVIDEIDYLVNTYGIRNIKI--------MDEMFAMNEKRVAAL 286

Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
              + E +G     +  +    +S  ++       +   ++    +SGS R++  + + +
Sbjct: 287 CDRIIE-RGYDLNFWAYARVNTVSPGMLAKMKRAGI--NWVSYGFESGSKRVINDVTKGY 343

Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370
              +  +++ +  +    + I +++I G P +  +    T+ ++ +I    A  +     
Sbjct: 344 DTSKVMEVVRQ--TYDEGLHICANYIFGLPEDDFESMNETLQMMFEINAEWANIYAAMAL 401

Query: 371 LG 372
            G
Sbjct: 402 PG 403


>gi|126655033|ref|ZP_01726472.1| hypothetical protein CY0110_15517 [Cyanothece sp. CCY0110]
 gi|126622512|gb|EAZ93217.1| hypothetical protein CY0110_15517 [Cyanothece sp. CCY0110]
          Length = 524

 Score = 68.8 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 50/309 (16%), Positives = 105/309 (33%), Gaps = 30/309 (9%)

Query: 72  IREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSP---IVNV-- 126
           +      +++  LG I+       +   D  +VV G       E++    P   IV+V  
Sbjct: 113 VTTAYYSELWRNLGLIKRGLKRAKRYQPDARLVVGGGAVSVFYEQLKTGLPSGTIVSVGE 172

Query: 127 --------VVGPQTYYRLPELLERARFGKRVVDTDYSVEDK----FERLSIVDGGYN--- 171
                   + G         ++       R++    +  +K    ++ +  +   +N   
Sbjct: 173 GETLLQKLLSGQDFSDERCYVVGDNEPRDRLIHESPTPLEKTACNYDYIKTIWPEFNYYF 232

Query: 172 RKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR-SLSQVVDEARKLIDNGVCEITLLGQ 230
           ++      +  + GC   C +CV     G ++      +VV E R+L D G+        
Sbjct: 233 QENDFYIGVQTKRGCPHNCCYCVYTVVEGKQVRINPADEVVKEMRQLYDRGIRNFWFTDA 292

Query: 231 NVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY-TTSHPRDMSDCLIKAHGDLDVLMP 289
                R    D E      L   L+   G+  + +       +++  L K        M 
Sbjct: 293 QFIPARRFMKDAE----ELLEKILAS--GMTDIHWAAYIRADNLNPYLCKLMAQTG--MN 344

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           Y  + + SGS  +++ M   +      Q    +++   +  +S ++      ET D  R 
Sbjct: 345 YFEIGITSGSQELVRKMRMGYNLRTVLQNCRDLKAAGFNDLVSVNYSFNVIDETFDTIRQ 404

Query: 350 TMDLVDKIG 358
           T+    ++ 
Sbjct: 405 TITYHRELE 413


>gi|254784854|ref|YP_003072282.1| radical SAM domain-containing protein [Teredinibacter turnerae
           T7901]
 gi|237685276|gb|ACR12540.1| radical SAM domain protein [Teredinibacter turnerae T7901]
          Length = 488

 Score = 68.8 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 65/358 (18%), Positives = 125/358 (34%), Gaps = 45/358 (12%)

Query: 40  DSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGG 99
           D+  + D F            D D+++++   +   A +K    +  I   +N+ +  GG
Sbjct: 92  DTAVIVDSFNKM------LKSDIDVVLVSAYTMYFSATKK----IAEICAQRNTPLLVGG 141

Query: 100 DLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV--------VD 151
           ++ VV    +A+   +      P V  V   +    L +L+     GK V         D
Sbjct: 142 NMFVVPD--IARTWAD-----IPGVTAVFAGEPEKILVQLVSDISAGKSVAGCPGITTHD 194

Query: 152 TDYSVEDKFERLSIVDGGYNRKRGVTAF------LTIQEGCDK-FCTFC--VVPYTRGIE 202
           +        + L  V            +      +    GC+   CTFC  V+       
Sbjct: 195 SIAPPAPPLQNLDDVPFPDFSAFPWECYPNRIVPIMTGRGCEWARCTFCSDVLTSAGRQY 254

Query: 203 ISRSLSQVVDEARKLIDNG-VCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
            SRSL+ V+ E R   +   V     L   +N+     ++  +    ++      IK   
Sbjct: 255 RSRSLANVLAEIRYQREKHNVDLFVFLDLKLNS----DVELWRGLAREIPRIAPGIKWTA 310

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
            +   +     +S   ++A  D    +  +   ++SGS  IL SM +        Q I  
Sbjct: 311 SVHVDSRKDNGLSREDLQAAADAG--LARITCGLESGSQAILNSMKKGVKLDRLSQFIRD 368

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI--GYAQAFSFKYSPRLGTPGSN 377
             +   ++++    I+G P E   D   T   ++       +    +++    TP +N
Sbjct: 369 AHAA--NLSVRLTSIIGDPEEEARDIDETTQFLNSHANEVERVVVNRFALAPNTPATN 424


>gi|222100781|ref|YP_002535349.1| Radical SAM domain protein [Thermotoga neapolitana DSM 4359]
 gi|221573170|gb|ACM23982.1| Radical SAM domain protein [Thermotoga neapolitana DSM 4359]
          Length = 598

 Score = 68.8 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 43/229 (18%), Positives = 82/229 (35%), Gaps = 17/229 (7%)

Query: 177 TAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAW 235
            A + +  GC + C FC           RSL  +++ A K++ N G  EI+LL  +    
Sbjct: 250 RAVVEVARGCTRGCRFCHASIYYRPVRERSLENIIENAEKMLKNTGYEEISLLSLSTMDH 309

Query: 236 RGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPV 295
                  E+         ++       +   ++        +      +      L    
Sbjct: 310 TQIEKVVEELLRRFSERKIA-------ISIPSTRMDRFGVEIASRIASVRK--TGLTFAP 360

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL-- 353
           ++ + R+   +N+     +    ++  R       +   F+VG PGET++D +  +DL  
Sbjct: 361 EAATQRLRNIINKNIEEQDIFSTLEAARKSGWR-RVKLYFMVGLPGETEEDLKELVDLLG 419

Query: 354 -VDKIGY--AQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLR 399
            V  IG+    A    + P+  TP      Q+      E+   L +  R
Sbjct: 420 RVKAIGFREVSASVAVFVPKPHTP-FQFARQITPEEANEKFKILTRAKR 467


>gi|242280924|ref|YP_002993053.1| hypothetical protein Desal_3466 [Desulfovibrio salexigens DSM 2638]
 gi|242123818|gb|ACS81514.1| conserved hypothetical protein [Desulfovibrio salexigens DSM 2638]
          Length = 317

 Score = 68.8 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 40/195 (20%), Positives = 75/195 (38%), Gaps = 8/195 (4%)

Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTF 247
           K C FC    +     S S+S       +          L    +     +      C++
Sbjct: 40  KGCIFCSPQGSGSGLHSLSMSIP----EQWAHWQEKLSKLYTAKLYLAYLQSYSNTYCSY 95

Query: 248 SDLLYSLSEIKGLVRL--RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
            +L  +L ++ GL  L      + P  + D  +     L +   +L L +QS ++  L  
Sbjct: 96  EELKCALDQLNGLPGLAGLCIGTRPDCLDDEKLSLIKSLGLKETWLDLGLQSSNNATLDR 155

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           +NR HTA ++ + +         + + +  I G PGET +DF  ++  ++ +  A     
Sbjct: 156 INRGHTAEQFAEAVKMAHG--HGLDVCAHLIAGLPGETAEDFIESVRFLNDLPIAGIKFH 213

Query: 366 KYSPRLGTPGSNMLE 380
                 GTP + + E
Sbjct: 214 NLFVGKGTPLTKLYE 228


>gi|116753521|ref|YP_842639.1| radical SAM domain-containing protein [Methanosaeta thermophila PT]
 gi|116664972|gb|ABK13999.1| Radical SAM domain protein [Methanosaeta thermophila PT]
          Length = 484

 Score = 68.8 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 42/238 (17%), Positives = 85/238 (35%), Gaps = 17/238 (7%)

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           E      R +     +E       ++  G+         +    GC + C FC +    G
Sbjct: 151 EMKHNPPRALLNPEEIEMPNRDARLIRDGFYAFDVPVDSVETSRGCTQGCKFCSINSMYG 210

Query: 201 IE-ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
                  + +V+++ +   ++G   I     N+          +      +  ++ +  G
Sbjct: 211 RSFRKFEIKRVIEDIQDAEEHGAGSIFFPDDNIT--------LDVKRLEAICDAIID-AG 261

Query: 260 LVRLRY---TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           L  LRY    ++     S+ L+K  G+       + L V+S S R L+   +   +    
Sbjct: 262 LTHLRYKTQASASGIASSERLVKKMGEAG--FDGVFLGVESASKRNLQFFGKGRMSDHAE 319

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
           + +  +     DI +S+  I G P +T +D  A   L  ++       +  +P   TP
Sbjct: 320 RAVRYLHDN--DIIVSTGLIGGNPDDTAEDMWANFHLARQLKVDFPIFYINTPYPKTP 375


>gi|170759700|ref|YP_001787951.1| putative B12-binding Fe-S oxidoreductase [Clostridium botulinum A3
           str. Loch Maree]
 gi|169406689|gb|ACA55100.1| putative cobalamin-dependent enzyme [Clostridium botulinum A3 str.
           Loch Maree]
          Length = 561

 Score = 68.8 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 48/308 (15%), Positives = 104/308 (33%), Gaps = 34/308 (11%)

Query: 60  DDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILR 119
           + ADL+   +C+I           L  +  L N          +V  G     + E  LR
Sbjct: 54  EKADLVAF-SCYIWN---------LEYVEELANLIKLVKPSTEIVFGGPEVSYDSESFLR 103

Query: 120 RSPIVNVVVGPQTYYRLPELLERARFG----------KRVVDTDYSVEDKFERLSIVDGG 169
           + P   V+ G         +  +              K +   +Y+ E     +  V   
Sbjct: 104 KVPGEYVIEGEGEETFREFIKCKIENKSLDRVKGLYIKTLNGIEYTGERHNISMDSVVFP 163

Query: 170 YNRKRGV---TAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEIT 226
           Y  +  +     +     GC   C +C+     G      + +V  E + L+D  V  I 
Sbjct: 164 YKEEDDLKNKIVYYEASRGCPFKCKYCLSSTLHG-VRFHDIERVKKEIKFLVDKNVKLIK 222

Query: 227 LLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV 286
            + +  N      +   +   +    +           +       ++   ++       
Sbjct: 223 FVDRTFNCNHKFAMGIWEYILNLDTDA---------TFHFEISADLLTKEELEILSKGKE 273

Query: 287 LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDD 346
                 + VQ+ ++ +LK++NR       ++ ++ +++++ +I    D I G PGE  + 
Sbjct: 274 GRIQFEVGVQTTNNEVLKNINRHVNFETIKEKVEELKNLK-NIKQHLDLIAGLPGEDYNS 332

Query: 347 FRATMDLV 354
           F+ + + V
Sbjct: 333 FKNSFNDV 340


>gi|307330489|ref|ZP_07609631.1| oxygen-independent coproporphyrinogen III oxidase [Streptomyces
           violaceusniger Tu 4113]
 gi|306883824|gb|EFN14868.1| oxygen-independent coproporphyrinogen III oxidase [Streptomyces
           violaceusniger Tu 4113]
          Length = 400

 Score = 68.8 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 46/241 (19%), Positives = 88/241 (36%), Gaps = 25/241 (10%)

Query: 186 CDKFCTFCVV-PYTRGIEI-------SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG 237
           C   C +C    YT            SR      + A ++++       +LG +      
Sbjct: 29  CATRCGYCDFNTYTASELRGSGGVLASRD-----NYAEQVVEEVRLARKVLGDDPRPVET 83

Query: 238 KGLDGEKCTF---SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKA--HGDL-DVLMPYL 291
             + G   T    +DL   L  I+    L        + +   +      +L +     +
Sbjct: 84  VFVGGGTPTLLAAADLGRMLGAIREEFGLAAGVEVTTEANPESVDPRYLAELREAGFNRI 143

Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351
              +QS    +LK ++R HT       +   R+   D  ++ D I G PGE+D D+RA++
Sbjct: 144 SFGMQSARQPVLKVLDRTHTPGRPEACVAEARAAGFD-HVNLDLIYGTPGESDADWRASL 202

Query: 352 DLVDKIGYAQAFSFKYSPRLGTPGSN--MLEQVD---ENVKAERLLCLQKKLREQQVSFN 406
           +     G     ++      GT  +      +V    ++V A+R L  ++ L     ++ 
Sbjct: 203 EAALGAGPDHVSAYALIVEEGTRLARRIRRGEVPMTDDDVHADRYLIAEEILSAAGFTWY 262

Query: 407 D 407
           +
Sbjct: 263 E 263


>gi|289771705|ref|ZP_06531083.1| oxygen-independent coproporphyrinogen III oxidase [Streptomyces
           lividans TK24]
 gi|289701904|gb|EFD69333.1| oxygen-independent coproporphyrinogen III oxidase [Streptomyces
           lividans TK24]
          Length = 413

 Score = 68.8 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 51/241 (21%), Positives = 86/241 (35%), Gaps = 25/241 (10%)

Query: 186 CDKFCTFCVV-PYTRGIEI-------SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG 237
           C   C +C    YT            SR      + A  L+D       +LG +    R 
Sbjct: 42  CATRCGYCDFNTYTATELRGTGGVLASRD-----NYADTLVDEVRLARKVLGDDPREVRT 96

Query: 238 KGLDGEKCTFS---DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKA--HGDLDVL-MPYL 291
             + G   T     DL+  L  I+    L        + +   +       L       +
Sbjct: 97  VFVGGGTPTLLAAGDLVRMLGAIRDEFGLAPDAEITTEANPESVDPAYLATLRAGGFNRI 156

Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351
              +QS    +LK ++R HT       +   R+   D  ++ D I G PGE+DDD+RA++
Sbjct: 157 SFGMQSAKQHVLKILDRTHTPGRPEACVAEARAAGFD-HVNLDLIYGTPGESDDDWRASL 215

Query: 352 DLVDKIGYAQAFSFKYSPRLGTPGSN--MLEQVD---ENVKAERLLCLQKKLREQQVSFN 406
           D     G     ++      GT  +      +V    ++V A+R L  ++ L      + 
Sbjct: 216 DAALGAGPDHVSAYALIVEEGTQLARRIRRGEVPMTDDDVHADRYLIAEEALSAAGYDWY 275

Query: 407 D 407
           +
Sbjct: 276 E 276


>gi|256787818|ref|ZP_05526249.1| coproporphyrinogen III oxidase [Streptomyces lividans TK24]
          Length = 410

 Score = 68.8 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 51/241 (21%), Positives = 86/241 (35%), Gaps = 25/241 (10%)

Query: 186 CDKFCTFCVV-PYTRGIEI-------SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG 237
           C   C +C    YT            SR      + A  L+D       +LG +    R 
Sbjct: 39  CATRCGYCDFNTYTATELRGTGGVLASRD-----NYADTLVDEVRLARKVLGDDPREVRT 93

Query: 238 KGLDGEKCTFS---DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKA--HGDLDVL-MPYL 291
             + G   T     DL+  L  I+    L        + +   +       L       +
Sbjct: 94  VFVGGGTPTLLAAGDLVRMLGAIRDEFGLAPDAEITTEANPESVDPAYLATLRAGGFNRI 153

Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351
              +QS    +LK ++R HT       +   R+   D  ++ D I G PGE+DDD+RA++
Sbjct: 154 SFGMQSAKQHVLKILDRTHTPGRPEACVAEARAAGFD-HVNLDLIYGTPGESDDDWRASL 212

Query: 352 DLVDKIGYAQAFSFKYSPRLGTPGSN--MLEQVD---ENVKAERLLCLQKKLREQQVSFN 406
           D     G     ++      GT  +      +V    ++V A+R L  ++ L      + 
Sbjct: 213 DAALGAGPDHVSAYALIVEEGTQLARRIRRGEVPMTDDDVHADRYLIAEEALSAAGYDWY 272

Query: 407 D 407
           +
Sbjct: 273 E 273


>gi|21221018|ref|NP_626797.1| coproporphyrinogen III oxidase [Streptomyces coelicolor A3(2)]
 gi|6714773|emb|CAB66237.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Streptomyces coelicolor A3(2)]
          Length = 435

 Score = 68.8 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 51/241 (21%), Positives = 86/241 (35%), Gaps = 25/241 (10%)

Query: 186 CDKFCTFCVV-PYTRGIEI-------SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG 237
           C   C +C    YT            SR      + A  L+D       +LG +    R 
Sbjct: 64  CATRCGYCDFNTYTATELRGTGGVLASRD-----NYADTLVDEVRLARKVLGDDPREVRT 118

Query: 238 KGLDGEKCTFS---DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKA--HGDLDVL-MPYL 291
             + G   T     DL+  L  I+    L        + +   +       L       +
Sbjct: 119 VFVGGGTPTLLAAGDLVRMLGAIRDEFGLAPDAEITTEANPESVDPAYLATLRAGGFNRI 178

Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351
              +QS    +LK ++R HT       +   R+   D  ++ D I G PGE+DDD+RA++
Sbjct: 179 SFGMQSAKQHVLKILDRTHTPGRPEACVAEARAAGFD-HVNLDLIYGTPGESDDDWRASL 237

Query: 352 DLVDKIGYAQAFSFKYSPRLGTPGSN--MLEQVD---ENVKAERLLCLQKKLREQQVSFN 406
           D     G     ++      GT  +      +V    ++V A+R L  ++ L      + 
Sbjct: 238 DAALGAGPDHVSAYALIVEEGTQLARRIRRGEVPMTDDDVHADRYLIAEEALSAAGYDWY 297

Query: 407 D 407
           +
Sbjct: 298 E 298


>gi|170076955|ref|YP_001733593.1| hypothetical protein SYNPCC7002_A0327 [Synechococcus sp. PCC 7002]
 gi|169884624|gb|ACA98337.1| conserved hypothetical protein, radical SAM superfamily
           [Synechococcus sp. PCC 7002]
          Length = 521

 Score = 68.8 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 50/294 (17%), Positives = 105/294 (35%), Gaps = 36/294 (12%)

Query: 58  SMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEI 117
             + ADL++++   +++         L +I+  K          LV V G    +  EE+
Sbjct: 62  EWEWADLVLMSAMIVQKD------DLLDQIKEAKKRDK------LVAVGGPYPTSVPEEV 109

Query: 118 LRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNR---KR 174
             +    + ++  +    LP  +E    G       +  E+K +  +     Y+     +
Sbjct: 110 --QDVGADFLILDEGEITLPMFVEAVNNG--ATSGTFRAEEKPDVTTTPVPRYDLLELDQ 165

Query: 175 GVTAFLTIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVCEITLLGQNVN 233
             +  +    GC   C FC +    G +  +++  Q++ E   L + G      +  +  
Sbjct: 166 YDSMSVQFSRGCPFQCEFCDIIVLYGRKPRTKTPEQLLKELDCLYELGWRRSIFMVDD-- 223

Query: 234 AWRGKGLDGEKCTFSDLLYSLSEIKGL----VRLRYTTSHPRDMSDCLIKAHGDLDVLMP 289
                   G K     LL +L E +       R     S        L+    +      
Sbjct: 224 -----NFIGNKRNVKLLLKALKEWQREHQYPFRFNTEASVDLADDPELMDLMVEC--FFD 276

Query: 290 YLHLPVQSGSDRILKSMNRR-HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGE 342
            + L +++  +  L+   +  +T     + ID+I  ++  +   + FI+GF GE
Sbjct: 277 AVFLGIETPDEESLQLTKKFQNTRSSLAESIDKI--IQAGLRPMAGFIIGFDGE 328


>gi|237796070|ref|YP_002863622.1| putative B12-binding Fe-S oxidoreductase [Clostridium botulinum Ba4
           str. 657]
 gi|229260913|gb|ACQ51946.1| putative cobalamin-dependent enzyme [Clostridium botulinum Ba4 str.
           657]
          Length = 559

 Score = 68.8 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 50/308 (16%), Positives = 110/308 (35%), Gaps = 34/308 (11%)

Query: 60  DDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILR 119
           + ADL+   +C+I           L  +  L N          +V  G     + E  LR
Sbjct: 54  EKADLVAF-SCYIWN---------LEYVEELANLIKLIKPSTEIVFGGPEVSYDSESFLR 103

Query: 120 RSPIVNVVVGPQTYYRLPEL--------LERAR--FGKRVVDTDYSVEDKFERLSIVDGG 169
           + P   V+ G         +        L+R +  + K +   +Y+ E     ++ V   
Sbjct: 104 KVPGEYVIEGEGEETFREFIKCKIVNKSLDRVKGLYIKTLNGIEYTGERHNISMNSVVFP 163

Query: 170 YNRKRGV---TAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEIT 226
           Y ++  +     +     GC   C +C+     G      + +V  E + L+D  V  I 
Sbjct: 164 YKKEEDLKNKIVYYEASRGCPFKCKYCLSSTLHG-VRFHDIERVKKEIKFLVDKNVKLIK 222

Query: 227 LLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV 286
            + +  N      +   +   +    +           +       ++   ++       
Sbjct: 223 FVDRTFNCNHKFAMGIWEYILNLDTDA---------TFHFEISADLLTKEELEILSKGKE 273

Query: 287 LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDD 346
                 + VQ+ ++ +LK++NR       ++ ++ +++++ +I    D I G PGE  + 
Sbjct: 274 GRIQFEVGVQTTNNEVLKNINRHVNFETIKEKVEELKNLK-NIKQHLDLIAGLPGEDYNS 332

Query: 347 FRATMDLV 354
           F+ + + V
Sbjct: 333 FKNSFNDV 340


>gi|113475399|ref|YP_721460.1| radical SAM family protein [Trichodesmium erythraeum IMS101]
 gi|110166447|gb|ABG50987.1| Radical SAM [Trichodesmium erythraeum IMS101]
          Length = 533

 Score = 68.8 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 52/332 (15%), Positives = 118/332 (35%), Gaps = 33/332 (9%)

Query: 58  SMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEI 117
             + ADL++L+   ++    E ++  +   +             LV   G    A  +E 
Sbjct: 62  EWEWADLVILSAMIVQ---KEDLHDQIREAKRRHK---------LVACGGPYPTALPQEQ 109

Query: 118 LRRSPIVNVVVGPQTYYRLPELLERARFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRG 175
           L     V+ ++  +    LP  ++  + G+   +   D +  D              K  
Sbjct: 110 L--DSGVDFLILDEGEITLPMFVDAIKNGETKGIFRADGNKPDVTTTPLPRFDLLEMKYY 167

Query: 176 VTAFLTIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVCEITLLGQNVNA 234
            +  +    GC   C FC +    G +  +++ +Q++ E   L D G      +  +   
Sbjct: 168 ESMSVQFSRGCPFQCEFCDIIVLYGRKPRTKTPAQLLAELDCLYDLGWRGSLFMVDD--- 224

Query: 235 WRGKGLDGEKCTFSDLLYSL----SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY 290
                  G K     LL  L    +E +   ++    S        L++   D +  +  
Sbjct: 225 ----NFIGNKRNVKLLLKELKVWQAEHQYPFKITTEASVNLAEDPELMQLMVDSN--LRA 278

Query: 291 LHLPVQSGSDRILKSMNR-RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           + L +++  +  L+  ++ ++      + +++I  ++  I + + FI+GF GE       
Sbjct: 279 VFLGIETPDEDSLELTHKYQNNRNPLNEAVEKI--IKSGIRVMAGFIIGFDGEKPGAGDR 336

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
            +  V++     A          T   + L++
Sbjct: 337 IVKFVEETTIPTAMFSMLQVLPNTALWHRLKK 368


>gi|326792103|ref|YP_004309924.1| radical SAM protein [Clostridium lentocellum DSM 5427]
 gi|326542867|gb|ADZ84726.1| Radical SAM domain protein [Clostridium lentocellum DSM 5427]
          Length = 441

 Score = 68.8 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 59/325 (18%), Positives = 115/325 (35%), Gaps = 58/325 (17%)

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPI--VNVVVGPQTYYRLPELLERAR 144
           I  +K    K   D+ V++ G + +   +EI   +    +  V G +    +P++++ + 
Sbjct: 78  IHIVKEIVKKIPKDIKVIIGGQLVKCIYKEIASWNVEHKIIAVCG-EGELIIPDIIKESV 136

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGG-----------------YNRKRGVTAFLTIQEGCD 187
             K ++  D     + +  SI                      NR     A +    GC 
Sbjct: 137 KEKPIMINDNCTVYRVDNTSIYFPEDISQIVLDRNLFKNRILKNRFNLQEACMVSSRGCI 196

Query: 188 KFCTFCVVPYTRGIEIS---------RSLSQVVDEARK--LIDNGVCEITLLGQNVNAWR 236
             C FC      G   S         RS   ++DE  +   ++  V  I +L       R
Sbjct: 197 YNCAFC------GGAKSLNEDICTRIRSKDSIIDEINEIKKVNPEVQSIRMLDDLFLRSR 250

Query: 237 GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQ 296
               +            + +I  L        +    +  L++           + + ++
Sbjct: 251 RSIKEAI---------EIFQIVQLKWRAMAHIYSFRNNQDLLQELSRCG--CLEVFVGIE 299

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
           +GS+R+ K +N+  TA E  + I  I +   +I +   F+ G P E  +D + T  L  +
Sbjct: 300 TGSNRMRKKINKLGTAEEVYECIKAILNA--NINVKGYFMYGLPEENLEDMQETYRLARE 357

Query: 357 IGYA--------QAFSFKYSPRLGT 373
           +  A        +  +F++ P  GT
Sbjct: 358 LKEASENTKAMFRNSTFQFRPYHGT 382


>gi|88807142|ref|ZP_01122654.1| hypothetical protein WH7805_11363 [Synechococcus sp. WH 7805]
 gi|88788356|gb|EAR19511.1| hypothetical protein WH7805_11363 [Synechococcus sp. WH 7805]
          Length = 524

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 69/333 (20%), Positives = 116/333 (34%), Gaps = 43/333 (12%)

Query: 62  ADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGE--EILR 119
           A+L+V++   ++    + +   +   +            L V V G  A +  +  EI  
Sbjct: 66  AELVVISGMIVQ---KDDMQVQIEEAKR---------RCLPVAVGGPYASSTPDAPEIAD 113

Query: 120 RSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAF 179
               V +  G  T     E ++R   G R        +     +   D          + 
Sbjct: 114 ADFKV-LDEGEITLPMFVEAIQRGDSGGRFSSEGEKPDVTSTPIPRFDLLELDAYDSMS- 171

Query: 180 LTIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK 238
           +    GC   C FC +    G +  +++  Q+V E + L D G      L  +       
Sbjct: 172 VQFSRGCPFNCEFCDIIVLYGRKPRTKTPDQLVAELQSLYDLGWRRSIFLVDD------- 224

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLR-YTTSHPRDMSDCLIKAHGDLDVLMPYLH----- 292
              G K     L   L EIK     R Y  S   + S  L     D D +M  +H     
Sbjct: 225 NFIGNKRNAKLL---LPEIKRWQEERGYPFSFATEASVDL----ADDDEMMRMMHEARFE 277

Query: 293 ---LPVQSGSDRILKSMNR-RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFR 348
              L +++  +  L++  + ++T       +DRI +    I + + FI+GF GE D   R
Sbjct: 278 SVFLGIETPDEASLETSRKIQNTRNPLDAAVDRITAN--GIRVMAGFIIGFDGEKDGAGR 335

Query: 349 ATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
             +D V + G   A          T     LE+
Sbjct: 336 RIVDFVTRTGIPAAMMGMLQALPNTALWYRLEK 368


>gi|255525804|ref|ZP_05392734.1| Radical SAM domain protein [Clostridium carboxidivorans P7]
 gi|296186361|ref|ZP_06854765.1| radical SAM domain protein [Clostridium carboxidivorans P7]
 gi|255510537|gb|EET86847.1| Radical SAM domain protein [Clostridium carboxidivorans P7]
 gi|296049162|gb|EFG88592.1| radical SAM domain protein [Clostridium carboxidivorans P7]
          Length = 563

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 40/192 (20%), Positives = 75/192 (39%), Gaps = 16/192 (8%)

Query: 183 QEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG 242
             GC   C +C+   T G      +++V  E R L+D G   +  + +  N      +D 
Sbjct: 187 SRGCPFNCKYCLSSTTHG-VRFFDINRVKKELRFLVDKGAKLVKFVDRTFNCNVEFAMD- 244

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
                  +   L+E+       +  S    +++  IK   +         + VQ+ ++ I
Sbjct: 245 -------VWKFLTELDTEATFHFEISADI-LTEEEIKLLSNAPKGRIQFEVGVQTTNNEI 296

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV-----DKI 357
           LK++NR     + R+ ++ +     +I    D I G PGE    F+ + + V     ++I
Sbjct: 297 LKNINRNVNFEDIREKVEEL-ESIKNIKQHLDLIAGLPGENIKSFKKSFNDVYSIRPEEI 355

Query: 358 GYAQAFSFKYSP 369
                   K SP
Sbjct: 356 QLGFLKLLKGSP 367


>gi|119358360|ref|YP_913004.1| magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase
           [Chlorobium phaeobacteroides DSM 266]
 gi|119355709|gb|ABL66580.1| Magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase
           [Chlorobium phaeobacteroides DSM 266]
          Length = 608

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 59/304 (19%), Positives = 100/304 (32%), Gaps = 36/304 (11%)

Query: 93  SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK----- 147
           + I       VV+ G    A  EE+L +   V+ VV  +      EL+ +    +     
Sbjct: 87  AEIAREHGAFVVMGGFHPTALPEEVL-KLSCVDAVVIGEGEATFRELVLKGPSREVKGLA 145

Query: 148 -------------RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCV 194
                         ++    S+      L  +  G +        +    GC   C+FC 
Sbjct: 146 FRDNGGVVYTGVREIIGDIDSIAFPLRSLRPLRYGESGSNYSIDTIYTSRGCPWSCSFCA 205

Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL 254
                     RS   VVDE   L D    ++  +            D    T      ++
Sbjct: 206 NDQMHKNWRGRSAENVVDEIALLHDPKKKKLLKI-----------WDANFLTNIKRAEAI 254

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMP----YLHLPVQSGSDRILKSMNRRH 310
            ++     L          +  LI+A   LD L       + L ++S +  IL  MN+++
Sbjct: 255 CDLMIDRGLTNFRIMTETRAKDLIRAERILDKLHRVGLSKVGLGIESPNPEILAMMNKKN 314

Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370
              +    ID +R  R  +     FI+G   E+ +D     +    +G  QA     +P 
Sbjct: 315 VLDDVSTAIDLLRKHR--VGAEGYFIIGHYTESVEDTVVYPEFAKGLGLKQALFMAMTPY 372

Query: 371 LGTP 374
            GT 
Sbjct: 373 PGTK 376


>gi|39995475|ref|NP_951426.1| radical SAM family protein [Geobacter sulfurreducens PCA]
 gi|39982238|gb|AAR33699.1| radical SAM protein, TIGR01212 family [Geobacter sulfurreducens
           PCA]
 gi|298504475|gb|ADI83198.1| radical SAM domain iron-sulfur cluster-binding oxidoreductase,
           TIGR01212 family [Geobacter sulfurreducens KN400]
          Length = 305

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 33/137 (24%), Positives = 51/137 (37%), Gaps = 4/137 (2%)

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL-HLPVQSGSDRILK 304
               L      + G+  L   T  P  +   +I    +      +   L +Q+  DR L 
Sbjct: 99  RLRLLYDEALSVPGVAGLIVGT-RPDCLPPEVIDLLAEYARSTYFWLELGMQTSHDRTLA 157

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
            +NR H A  ++   DR R     I + +  I+G PGETD D   T  +++ +G      
Sbjct: 158 LLNRGHDAASFQDAADRCRRR--GIRLCAHVILGLPGETDADMLETAMMLNGVGIDGVKL 215

Query: 365 FKYSPRLGTPGSNMLEQ 381
                   TP   M  Q
Sbjct: 216 HHLHVMKDTPLEVMYRQ 232


>gi|303326946|ref|ZP_07357388.1| radical SAM domain protein [Desulfovibrio sp. 3_1_syn3]
 gi|302862934|gb|EFL85866.1| radical SAM domain protein [Desulfovibrio sp. 3_1_syn3]
          Length = 886

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 44/234 (18%), Positives = 82/234 (35%), Gaps = 22/234 (9%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGK 238
           L I  GC + C FC           RSL+ +       +   G  EI+ L  +       
Sbjct: 253 LEIARGCTRGCRFCHAGMVYRPVRERSLANITRLLDDCLHETGFDEISFLSLSTG----- 307

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
                K     +L   +  +  + L   +     + D +I+   DL        L  ++G
Sbjct: 308 DFSALKTLCHGVLDRCAREQ--ISLSLPSLRVGSIDDEIIERMADLRR--TGCTLAPEAG 363

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           S R+   +N+  +         ++      + +   F++G P ETD+D  A  DL  K+ 
Sbjct: 364 SQRLRDVINKGVSEEGLLLHAQKLLEHGWRL-VKLYFMIGLPTETDEDLAAIADLCRKVR 422

Query: 359 ----------YAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQ 402
                        A    + P+  TP      Q+     + R+  +++  + Q+
Sbjct: 423 DAAGRGGPRLQVTAALSPFVPKPFTP-FQWEAQISREEISRRVHLVRELFKGQK 475


>gi|323524604|ref|YP_004226757.1| lipoic acid synthetase [Burkholderia sp. CCGE1001]
 gi|323381606|gb|ADX53697.1| lipoic acid synthetase [Burkholderia sp. CCGE1001]
          Length = 335

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 82/220 (37%), Gaps = 10/220 (4%)

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
           + +  ++++    E  S  + G    +G   F+ + + C + C FC V + R   +    
Sbjct: 70  KQILREHNLHTVCEEASCPNIGECFGKGTATFMIMGDKCTRRCPFCDVGHGRPDPL--DP 127

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
            +  + AR +    +  + +   +    R    DG    F + +    E+    R+   T
Sbjct: 128 DEPANLARTIAALKLKYVVITSVD----RDDLRDGGAAHFVECIRQTRELSPDTRIEILT 183

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
               D    L +A G L+   P +         R+ K            +++   +++ P
Sbjct: 184 P---DFRGRLDRALGILNAAPPDVMNHNLETVPRLYKEARPGSDYAHSLKLLKDFKALHP 240

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           D+A  S  +VG  GET+++    M  + +         +Y
Sbjct: 241 DVATKSGLMVGL-GETEEEILQVMRDLREHDVDMLTIGQY 279


>gi|194337712|ref|YP_002019506.1| Radical SAM domain protein [Pelodictyon phaeoclathratiforme BU-1]
 gi|194310189|gb|ACF44889.1| Radical SAM domain protein [Pelodictyon phaeoclathratiforme BU-1]
          Length = 465

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 46/310 (14%), Positives = 94/310 (30%), Gaps = 32/310 (10%)

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             +   R  + +         V++ G       EE +      + +V  +       +LE
Sbjct: 74  RTIDATRAYEIADKFREKGKKVILGGLHVSFNAEEAMA---HADCIVCGEAENLWATVLE 130

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNR----------KRGVTAFLTIQEGCDKFCT 191
               G   +   Y+ +D      IV   Y R              +  + +  GC   C+
Sbjct: 131 DVSLG--CLKPTYNAKDFPPVTKIVPLDYERIAQASKREKVDGSKSIPIYVTRGCPYECS 188

Query: 192 FCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDL 250
           FCV P   G    S+    +  +            +   +       + L   K    + 
Sbjct: 189 FCVTPNFTGKLYRSQKPEDLKRQIETAKKVFFKAKSKSSKPWFMLCDENLGVSKKRLWET 248

Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL----MPYLHLPVQSGSDRILKSM 306
           L  L             ++    S   ++    +  L       + +  +S     L++ 
Sbjct: 249 LDLL--------KGCNINYSVFFSMNFLEDKETIKKLVESGCNMVLVGFESIKQSTLEAY 300

Query: 307 NRRH--TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
           N+ H  +A ++ Q+I+  R     + +  +F+V    ++  D    +  V K        
Sbjct: 301 NKGHINSAEKFSQVIEECRQA--GLNVQGNFLVNPDLDSFKDMDDLVRFVGKNNIFMPIF 358

Query: 365 FKYSPRLGTP 374
              +P  GT 
Sbjct: 359 QIITPYPGTK 368


>gi|319899915|ref|YP_004159643.1| coproporphyrinogen III oxidase, anaerobic [Bacteroides helcogenes P
           36-108]
 gi|319414946|gb|ADV42057.1| coproporphyrinogen III oxidase, anaerobic [Bacteroides helcogenes P
           36-108]
          Length = 377

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 50/230 (21%), Positives = 82/230 (35%), Gaps = 14/230 (6%)

Query: 186 CDKFCTFCVV-PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK 244
           C   C +C     T      R +  +  E +   D    E     + V    G      +
Sbjct: 11  CKTRCIYCDFYSTTHSELKQRYIHALCQELQNRKDYLKGEAV---ETVYFGGGTPSQLTE 67

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPR--DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
             F  +  ++ EI GL      T      D+++  +     L      + + +Q+  D  
Sbjct: 68  EDFIQIFNTIKEICGLENAIEITLEANPDDLTEEYVSMLQTLP--FNRISMGIQTFDDPT 125

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           LK +NRRH + +    I+R R       IS D I G PGETD  ++  +     +     
Sbjct: 126 LKLLNRRHNSAQATTAIERCRQADFH-NISIDLIYGLPGETDKRWKHDLQQAVGLNVEHI 184

Query: 363 FSFKYSPRLGTPGSNMLE-----QVDENVKAERLLCLQKKLREQQVSFND 407
            ++  +   GTP   ML+     +VDE         L + L E      +
Sbjct: 185 SAYHLTYEKGTPIYEMLQTCHIREVDEESSVRFFTTLTETLVENGYEHYE 234


>gi|159149048|dbj|BAF92596.1| methyltransferase [Streptomyces pactum]
 gi|212379254|gb|ACJ24870.1| putative C-methyltransferase [Streptomyces pactum]
          Length = 575

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 67/371 (18%), Positives = 110/371 (29%), Gaps = 43/371 (11%)

Query: 79  KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVV---GPQTYYR 135
                +     L     K    + V + G       + I  R P  + V    G  T   
Sbjct: 97  MYDLHIVDAVRLLRCVRKADPSVFVAIGGAFCTYNAKLIAERIPEADCVAFGEGELTVEG 156

Query: 136 LPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTI------------- 182
           L E L   R  + V    +  E +             K+   A   +             
Sbjct: 157 LMECLAAGRDWRSVPGVWFWQEGRVRSSGPPKLPDLHKQAWPARDLLVHHRGAGIPTPVA 216

Query: 183 ----QEGCDKFCTFCVVPYTRG-----IEISRSLSQVVDEARKLIDN-GVCEITLLGQNV 232
                 GC   CTFC VP   G         RS   VVDE   L    G   +     N 
Sbjct: 217 STYTSRGCHAKCTFCYVPRAPGVTAGNAWRVRSPVDVVDEIEFLQREFGTRFLWFNDDNF 276

Query: 233 NAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL-MPYL 291
                 G +       ++L    +I       +      D      +A   L    M   
Sbjct: 277 GGAFQDGYNHAVGFAEEILRRDLKI------SFHCEFRVDTGLIDREALRTLRRAGMASA 330

Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351
            L +++GS  + K   +              R    +I +   +I+  PG T DD    +
Sbjct: 331 LLGMETGSPAMAKRFRKGTLVEYNFDAARMFRQ--ENIELEPGWIMVEPGTTVDDLWENL 388

Query: 352 DLVDKIGYA---QAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLRE-QQVSFND 407
             +     A     FSF  S  +   G+ M +++ +    + L  ++   RE    +  +
Sbjct: 389 KFIVAADIAVSENPFSFI-SRAIALRGTEMYDKITDPAPPD-LAEVEGPAREVLSEARRE 446

Query: 408 ACV--GQIIEV 416
             +  G++ +V
Sbjct: 447 YRIADGRVEDV 457


>gi|322433952|ref|YP_004216164.1| Radical SAM domain protein [Acidobacterium sp. MP5ACTX9]
 gi|321161679|gb|ADW67384.1| Radical SAM domain protein [Acidobacterium sp. MP5ACTX9]
          Length = 554

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 52/372 (13%), Positives = 118/372 (31%), Gaps = 54/372 (14%)

Query: 9   GVAHMVSQIVDQCIVPQRFFVKSYG-------CQMNVYDSLRMEDMFFSQGYERVNSMDD 61
           G   ++  + ++ ++P        G       C      S  +  +     +E +   D 
Sbjct: 46  GFEGVLEMVPEKSVMPP------LGLITVAALCP-----SSWVIRLL-DLSFEELREEDL 93

Query: 62  --ADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILR 119
             ADL+++++    +         L R R L       G           A +E E +  
Sbjct: 94  LWADLVMVSSM---QAQRIDTLDVLSRARRLGRRTFIGGP---------WASSEPEFLTT 141

Query: 120 RSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAF 179
           +    + V   +      ++  +   G        + +       I           T+ 
Sbjct: 142 Q---ADHVFVGEAEEVFGDIAHQLEQGSAQAIYKVADKPDMSVSPIPRFDLLHMNKYTSM 198

Query: 180 -LTIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG 237
            +    GC   C FC +    G    ++   +++ E   L+  G      +  +      
Sbjct: 199 SVQFSRGCPFQCEFCDIITIYGRRPRAKPPEKLIAELDALLALGWRNEVFIVDD------ 252

Query: 238 KGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMS----DCLIKAHGDLDVLMPYLHL 293
               G       L +SL+  +   +   +      +       L+ +  + + +  Y+ L
Sbjct: 253 -NFIGNHKLALQLTHSLAAWQDRSKRVISFYTEASIDLADKPELLASMVEANFM--YVFL 309

Query: 294 PVQSGSDRILKSMNRRHT-AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352
            +++ S   LK  ++      +    + +IR     + + + FIVGF  + +  F   + 
Sbjct: 310 GIETPSAEALKGSSKFQNLRGDLVTQVSKIRES--GLWVLAGFIVGFDSDDETIFERQLQ 367

Query: 353 LVDKIGYAQAFS 364
            +DK     A +
Sbjct: 368 FIDKTAITWAMA 379


>gi|284098574|ref|ZP_06385953.1| Radical SAM domain protein [Candidatus Poribacteria sp. WGA-A3]
 gi|283830438|gb|EFC34636.1| Radical SAM domain protein [Candidatus Poribacteria sp. WGA-A3]
          Length = 582

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 57/326 (17%), Positives = 112/326 (34%), Gaps = 36/326 (11%)

Query: 58  SMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEI 117
            ++ ADL+  +T  ++  + + V     R              + VV  G        EI
Sbjct: 63  DLEWADLVCTSTMIVQRHSLQTVIERCNRA------------GVPVVAGGPHPTTFHAEI 110

Query: 118 LRRSPIVNVVVGPQTYYRLPELLERARFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGV 176
                 V   V  +     PE L     G  +V+  +    D            + K   
Sbjct: 111 A----GVAHFVLDEAEEIFPEFLRDLENGAAKVIYREPRKPDVLHTPVPRFDLIDLKAYH 166

Query: 177 TAFLTIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVC-EITLLGQNVNA 234
           +  +    GC   C FC +    G    ++S  Q+V E   L   G    + L+  N  +
Sbjct: 167 SMCVQFSRGCPFDCEFCDIIKLYGRIPRTKSPEQMVQEFDALYRLGWRGPLFLVDDNFIS 226

Query: 235 WRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMS----DCLIKAHGDLDVLMPY 290
                    K     LL +L+E +      +T      ++    D L+ A   ++     
Sbjct: 227 --------NKRDALKLLPALAEWQKARGYPFTLFTEATVNLARMDTLMDAM--IEAGFNS 276

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQ--IIDRIRSV-RPDIAISSDFIVGFPGETDDDF 347
           + L +++ +   L  M +     +     ++  +R++ +  + +   FI+G  G+ +  F
Sbjct: 277 VFLGIETPNPEALIKMKKPQNVRKQEDDYLLHSVRTIQQKGMRVDGGFILGVDGDDESAF 336

Query: 348 RATMDLVDKIGYAQAFSFKYSPRLGT 373
            A +D + +     A  +  +   GT
Sbjct: 337 DAQIDFIQEAAIPIAPVYLLAAIKGT 362


>gi|21674515|ref|NP_662580.1| BchE/P-methylase family protein [Chlorobium tepidum TLS]
 gi|21647707|gb|AAM72922.1| BchE/P-methylase family [Chlorobium tepidum TLS]
          Length = 602

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 57/306 (18%), Positives = 103/306 (33%), Gaps = 42/306 (13%)

Query: 93  SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER---------- 142
           +RI +   + VV+ G    A  E++L     V++VV  +      EL+E+          
Sbjct: 87  ARIAKKHGVTVVMGGFHPTALPEQVLD-LGCVDLVVIGEGEATFRELVEKGPSRDVKGLC 145

Query: 143 -------ARFG-KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCV 194
                     G + ++    S+      L     G   +      +    GC   C+FC 
Sbjct: 146 WKENGVFVHTGIRELIKDVDSIRFPLRSLRPKRFGETSENYTIDTIYTSRGCPWTCSFCA 205

Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL 254
                     RS   VVDE  +L D    ++  +                  F   +  +
Sbjct: 206 NDKMHKHWRGRSAENVVDEIAQLHDRKKKKLLKI--------------WDANFLTNIRRV 251

Query: 255 SEIKGLVRLRYTTSHPRDMS---DCLIKAHGDLDVLMP----YLHLPVQSGSDRILKSMN 307
            +I  L+  R  T+           +I+A   L  L       + L ++S + + L+ MN
Sbjct: 252 EKICDLMIERGLTNFRIVTETRAKDVIRAERILPKLRKIGLSKVGLGIESPNPKTLELMN 311

Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           + ++  E    I+ +      +     FI+G   E+ +D          +G  Q      
Sbjct: 312 KENSLAEVTTAINLLNQY--GVGSEGYFIIGHYSESVEDTMPYPKFARALGLRQTLFMAM 369

Query: 368 SPRLGT 373
           +P  GT
Sbjct: 370 TPYPGT 375


>gi|189426408|ref|YP_001953585.1| radical SAM protein [Geobacter lovleyi SZ]
 gi|189422667|gb|ACD97065.1| Radical SAM domain protein [Geobacter lovleyi SZ]
          Length = 539

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 43/206 (20%), Positives = 69/206 (33%), Gaps = 13/206 (6%)

Query: 170 YNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLG 229
           Y R   V   L    GC   C+FC V         RS+  ++DE R L +     I ++ 
Sbjct: 207 YTRSHPVPMTLVAARGCPFRCSFC-VNNDDKRYRFRSIGNIMDEIRVLYEKYHFNILIIL 265

Query: 230 QNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV--L 287
             + A         +        +L E +      +  S     S  + +A   L     
Sbjct: 266 DELFAVH-------RDRLQQFATALLEGRARYGWDFDWSFQTHASANIDQATLQLAKQAG 318

Query: 288 MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDF 347
             +    ++S S  +L SMN+R    +    +     V   +    +FI G P ET    
Sbjct: 319 CFFFSYGIESASPTVLASMNKRTQPEQIEAALKLAEQV--QVGFGGNFIFGDPAETFQTA 376

Query: 348 RATMDLVDKIG-YAQAFSFKYSPRLG 372
             +++   K   YA        P  G
Sbjct: 377 LESLEFYKKHCLYAHVNVGSVHPYPG 402


>gi|295703356|ref|YP_003596431.1| cobalamin binding domain-containing protein [Bacillus megaterium
           DSM 319]
 gi|294801015|gb|ADF38081.1| cobalamin binding domain protein [Bacillus megaterium DSM 319]
          Length = 589

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 63/368 (17%), Positives = 125/368 (33%), Gaps = 42/368 (11%)

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +     +     K   +L+++  G     +    L R P  + +   +      +LL+  
Sbjct: 67  IEETIKVAQMLKKINPELIIIFGGPEVTYDVTHWLERIPEADFIAIGEGEETFKQLLDEL 126

Query: 144 ---------------RFGKRVVDTDYSVEDKFERLSIVDGGYNRK--RGVTAFLTIQEGC 186
                          + GK VV+   +  D  E  S      +R+       ++    GC
Sbjct: 127 HGERQFENVSGVAFRKEGKPVVNPQRNKIDLREMPSPFRFEEDRQELSKRVVYIETSRGC 186

Query: 187 DKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT 246
              C FC+     G        +V ++ R L+DNG   I  + +  N  R   ++  +  
Sbjct: 187 PFSCQFCLSSIEVG-VRYFDREKVKEDIRYLMDNGARTIKFVDRTFNISRSYAMEMFQFL 245

Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL-DVLMPYLHLPVQSGSDRILKS 305
             +        +G V     T+    M   +I+   D     +    + VQS +D + + 
Sbjct: 246 IDEHR------EGTVFQFEITADI--MRPEVIQFLNDNAPKGLFRFEIGVQSTNDAVNEL 297

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           + R+    +  + +  ++     I    D I G P E  + F+ T + V  +   +    
Sbjct: 298 VKRKQNFKKLTRTVTMVKEG-GKIDQHLDLIAGLPDEDYNSFKNTFNDVFALRPEELQLG 356

Query: 366 KYSPRLGT--------PGSNMLEQVDENVKAERLLCLQKKLREQQVS------FNDACVG 411
                 GT             ++Q    + +  +L     +R + V       +ND  + 
Sbjct: 357 FLKMLRGTGLRLSAPRYNYQYMDQSPYEILSNNVLPFSDVVRIKHVEDILEKFWNDHRMD 416

Query: 412 QIIEVLIE 419
           + IE L+E
Sbjct: 417 ETIEFLVE 424


>gi|322420243|ref|YP_004199466.1| cobalamin B12-binding domain-containing protein [Geobacter sp. M18]
 gi|320126630|gb|ADW14190.1| cobalamin B12-binding domain protein [Geobacter sp. M18]
          Length = 452

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 48/307 (15%), Positives = 87/307 (28%), Gaps = 38/307 (12%)

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           +R  +         + VV+ G  A    EE L      + VV  +      +L+E A  G
Sbjct: 69  LRAYQIGDAYRRKGVKVVMGGIHATIMPEEAL---EHADAVVVGEAEGIWLQLVEDAAAG 125

Query: 147 K--------RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
           +         + D +       E   I          +   +    GC   C FC +  T
Sbjct: 126 RLQRIYRSGGMTDLNGLPVPLRELSPITSQQGFNPIPIPIGIETSRGCPNDCEFCCIGQT 185

Query: 199 RGI-EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257
            G     R + +V+ E   +       +  +   +   R   +D            L++ 
Sbjct: 186 LGQQYRVRPVQEVIAEIEAI---DSPHLFFVDDALGLNRKAAVDIFTQMIPLKKRWLAQ- 241

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQS----GSDRILKSMNRRHTAY 313
                     +        L+            L +  +S      + ++K  N +    
Sbjct: 242 ---------GTVSLAEDVELLALMKRSG--CLGLLIGFESIQKEAQNDVMKIRNLK---- 286

Query: 314 EYRQIIDRIRSVR-PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
                 + +R        I   F+ GF  E  D F  T + + +           +P  G
Sbjct: 287 --IDFPEAMRRFHGEGFGILGSFVFGFDHENKDVFEQTFEFIMQTHMDIVQLRILTPYPG 344

Query: 373 TPGSNML 379
           T     L
Sbjct: 345 TKLYKRL 351


>gi|170077516|ref|YP_001734154.1| radical SAM domain/B12 binding domain-containing protein
           [Synechococcus sp. PCC 7002]
 gi|169885185|gb|ACA98898.1| radical SAM domain protein; Fe-S oxidoreductase family 2
           [Synechococcus sp. PCC 7002]
          Length = 522

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 42/302 (13%), Positives = 102/302 (33%), Gaps = 30/302 (9%)

Query: 79  KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVV---------- 128
           +++  LG I+       +   +  +VV G       E++    P   +V           
Sbjct: 118 ELWRNLGLIKRGLQKAQQYNPEAQMVVGGGAVSVFYEQLKTALPKGAIVSIGEGETLLER 177

Query: 129 ---GPQTYYRLPELLERARFGKRVVDTDYSVEDK-------FERLSIVDGGYNRKRGVTA 178
              G     +   ++ +A     ++  + +  +K          +      Y ++     
Sbjct: 178 LLRGQDFSDQRCYVVGQAELRPGMIHEEPTPIEKTACNYQYIAEIWPEFDYYLQENDFYI 237

Query: 179 FLTIQEGCDKFCTFCVVPYTRGIEISR-SLSQVVDEARKLIDNGVCEITLL-GQNVNAWR 236
            +  + GC   C +CV     G ++     ++VV E R+L + G+        Q + A +
Sbjct: 238 GVQTKRGCPHNCCYCVYTVVEGKQVRVNPAAEVVAEMRQLYNRGIRNFWFTDAQFIPAKK 297

Query: 237 GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQ 296
                       +LL ++ +         +     +++  +     +    M Y  + + 
Sbjct: 298 YMD------DVVELLQAIRDSGMDDIHWASYIRADNLTPEICDLMVETG--MNYFEIGIT 349

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
           SGS  +++ M   +      Q    +++   +  +S ++      ET D  R T+    +
Sbjct: 350 SGSQELVRKMRMGYNLRRVLQNCRDLKAAGFNDVVSVNYSFNVIDETFDTIRQTIAYHRE 409

Query: 357 IG 358
           + 
Sbjct: 410 LE 411


>gi|253987625|ref|YP_003038981.1| putative fe-s oxidoreductase [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253779075|emb|CAQ82235.1| predicted fe-s oxidoreductase [Photorhabdus asymbiotica]
          Length = 550

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 46/283 (16%), Positives = 90/283 (31%), Gaps = 38/283 (13%)

Query: 128 VGPQTYYRLPELLERARFGKRVVDTDYSVEDKFER------LSIVDGGYNRKRGVTA--- 178
           +G +       L  + + G+ V D                       G +R+R   A   
Sbjct: 173 MGNEARGLCFMLDGKVQMGEVVFDKSLEDIPSPAFSYELIQNDTSFAGQSRERWWKAVGE 232

Query: 179 ----FLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA 234
               ++  Q  C   CTFC      G  +SR +  +  +   L+  G   I     ++  
Sbjct: 233 SQQIYICTQ-SCRARCTFCSTYLIHGKLVSRPVELIAGDIEHLLTFGHDSIQFHDDDLLQ 291

Query: 235 WRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP 294
                   +     ++ ++              +    ++  L +     D     + L 
Sbjct: 292 HENLHELLDLLLEFNIAWTC------------NARSEVITPALARRM--YDAGCKKVFLG 337

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           V+S   R L   N+  T       ++ + S    I +   +I+G P +T +   A +D V
Sbjct: 338 VESLDQRSLNYYNKATTVEMNINAVNALNSS--GIGVICGYIIGAPHDTVESILADLDRV 395

Query: 355 DKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKK 397
             +      +   +P +GT        V+      R+  LQ+ 
Sbjct: 396 LALPIYFLATAILTPDIGT--------VEYRRALRRIPLLQEL 430


>gi|253702146|ref|YP_003023335.1| radical SAM protein [Geobacter sp. M21]
 gi|251776996|gb|ACT19577.1| Radical SAM domain protein [Geobacter sp. M21]
          Length = 450

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 47/281 (16%), Positives = 90/281 (32%), Gaps = 27/281 (9%)

Query: 99  GDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVED 158
             + V++ G       EE        + VV  +    L  +L+ A+ G+           
Sbjct: 85  RGVKVMLGGPHPTVMPEEAKL---HADSVVVGEAESVLASVLDDAKKGE------LEPFY 135

Query: 159 KFERLSIVDGGYNRKRGVTAFLT----IQEGCDKFCTFCVVPYTRG-IEISRSLSQVVDE 213
             E L +    + R+     ++        GC   C FC  P   G     R + +V+ +
Sbjct: 136 HGELLPVDRAPFPRRDLAPGYVFRSFFTSRGCPYDCKFCATPELHGSRMRYRPIGEVITD 195

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
                      +           G  +      F ++  SL  I+  V      S    M
Sbjct: 196 LSSCDHK----MWFCTD--ADSWGPDVPRYTALFREMATSLKGIR-WVGETSIASVQHQM 248

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP-DIAIS 332
            + +++       LM    +  +S +  IL       TA    +  D ++ +R   I + 
Sbjct: 249 GEEMLR-WARRSGLMQVW-IGWESFAPEILAQYGA--TAKMLEKREDALKKIRDNGIDVV 304

Query: 333 SDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
              ++G   E   ++   ++L D++           P  GT
Sbjct: 305 LFIMLGSKNEELSEYGRVLELCDRLAIT-PHPVMVVPYPGT 344


>gi|116748353|ref|YP_845040.1| magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase
           [Syntrophobacter fumaroxidans MPOB]
 gi|116697417|gb|ABK16605.1| Magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase
           [Syntrophobacter fumaroxidans MPOB]
          Length = 681

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 53/284 (18%), Positives = 93/284 (32%), Gaps = 39/284 (13%)

Query: 97  EGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA------------- 143
           +   + +V  G  A A   E L   P ++ VV  +    + EL  R              
Sbjct: 95  QNPGIKIVFGGHSASAVDIETLEAFPWIDAVVRGEGEITMSELASRCVRAEGLHGVRGLS 154

Query: 144 --------RFGKRVVDTDYSVEDKFERLSIVDGGYNRKR----GVTAFLTIQEGCDKFCT 191
                   R G R +  D       +   +      R         A L +  GC   C 
Sbjct: 155 FRDGGTVFRNGDRELIADLDELPLADYSFVPPFSTYRDSCGIPRSIAILEVGRGCPHHCI 214

Query: 192 FC-VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDL 250
           +C      R  + + S+ +++ E R L D    +  LL  +    R   ++    T  + 
Sbjct: 215 YCSQSVMWRRRQRTYSVPRLIREMRNLRDRYGAQCFLLAYDQFTARRSFVEQFCGTLIET 274

Query: 251 LYSLSEIKGLVRLRYTTSHPRD-MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
                   GL R+ +      D +   L+    +       +   + SGS R L  + + 
Sbjct: 275 --------GLNRVPWYCISRLDTVDAELLGLMREAG--CESMCYGIDSGSKRTLAFIRKN 324

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
                  + +         I  +  F++GFP E  +D  AT++L
Sbjct: 325 IDGDILLRRVRETTDQ--GIVPTLSFVIGFPEEEREDIDATLEL 366


>gi|182438782|ref|YP_001826501.1| coproporphyrinogen III oxidase [Streptomyces griseus subsp. griseus
           NBRC 13350]
 gi|178467298|dbj|BAG21818.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Streptomyces griseus subsp. griseus NBRC 13350]
          Length = 410

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 44/210 (20%), Positives = 75/210 (35%), Gaps = 28/210 (13%)

Query: 186 CDKFCTFCVV--------PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG 237
           C   C +C            + G   SR      + A  LI+       +LG +    R 
Sbjct: 39  CATRCGYCDFNTYTATELRGSGGALASRD-----NYAAHLIEEVRQARKVLGDDPRPVRT 93

Query: 238 KGLDGEKCTF---SDLLYSLSEIKGLVRLRYTTSHPRDMSDC-------LIKAHGDLDVL 287
             + G   T    +DL+  L+ I    R  +  +   +++                 +  
Sbjct: 94  VFVGGGTPTLLPAADLVRMLAAI----REEFGLADDAEITTEANPESVDPAYLTALREGG 149

Query: 288 MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDF 347
              +   +QS    +LK ++R HT       +   R+   D  ++ D I G PGE+DDD+
Sbjct: 150 FNRVSFGMQSARQHVLKILDRTHTPGRPEACVAEARAAGFD-HVNLDLIYGTPGESDDDW 208

Query: 348 RATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
           RAT+D     G     ++      GT  + 
Sbjct: 209 RATLDAAIGAGPDHVSAYALIVEEGTQLAR 238


>gi|46241653|gb|AAS83038.1| Fe-S oxidoreductase-like protein [Azospirillum brasilense]
          Length = 598

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 51/311 (16%), Positives = 98/311 (31%), Gaps = 39/311 (12%)

Query: 92  NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL--------ERA 143
               +   D  +V+ G +  A+GE ++ + P ++ V+  +       +L           
Sbjct: 142 RRVKEILPDTKIVLTGAM-SAKGEAVMEQFP-IHAVIQGEYEKGSVRVLNGASGVLPHEL 199

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT----- 198
                +    Y   D        D     ++     +    GC   C FCV P T     
Sbjct: 200 LTVAEMNAAPYPYFDDVIAHRYWDVNPAGQKAPQLQVWASRGCPYKCIFCVWPATMTGND 259

Query: 199 -----RGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLY 252
                +          V    R+L++  G   I       N        G++        
Sbjct: 260 PDGTGKRSVRFYEPDYVEGMLRELVERYGYRSIYFDDDTFNL-------GDRHVLG---- 308

Query: 253 SLSEIKGLVRLRYTTSHPRD-MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK-SMNRRH 310
            + E+   + L ++     D +     +A  D       + L  +SG+  +    +N+R 
Sbjct: 309 -ICEVMTRIGLPWSAMCRADTIKLETWRAMRDSG--CFGVKLGFESGNQWVNDNIVNKRL 365

Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370
                R  +  I+ +   + +   F  G PGET +  + T   +  +             
Sbjct: 366 NLETARTAVHEIKRL--GMTVHGTFTYGLPGETREQMQDTKSYIASLPLDTFQETGCGEI 423

Query: 371 LGTPGSNMLEQ 381
            GTP S + E+
Sbjct: 424 EGTPMSTLREK 434


>gi|309776932|ref|ZP_07671902.1| radical SAM domain protein [Erysipelotrichaceae bacterium 3_1_53]
 gi|308915343|gb|EFP61113.1| radical SAM domain protein [Erysipelotrichaceae bacterium 3_1_53]
          Length = 557

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 49/286 (17%), Positives = 100/286 (34%), Gaps = 28/286 (9%)

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVV---VGPQTYYRLPELL 140
           + +I+ +     +    L +VV G   +   E        V+ +    G Q+ +    +L
Sbjct: 68  IQQIKTIIQLLKQHDPLLHIVVGG--PEVSYESYRLLDEGVDAISIGEGEQSIWEYITML 125

Query: 141 ERARFG-------KRVVDTDYSVED-----KFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
           E  +         K+  +T+Y   D      F+    ++           +L    GC  
Sbjct: 126 EEGQPHEVAGIYTKQFPNTEYQRCDLSWLEGFDNPYFMEMDQQAMGRQYFYLETSRGCPY 185

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS 248
            CT+C+    R      S+  ++   R+L D+ V ++ LL +  N+   + L   +    
Sbjct: 186 GCTYCLSSADR-KVRMFSMDYIMGILRQLKDSDVKQVKLLDRTFNSNPARALKIARYMNE 244

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
             L+         +         +          D         + VQS + + L+S+ R
Sbjct: 245 HCLHQ------TFQFEIVAETLSEELLRFFCEEADTSRFR--FEIGVQSFNTKTLESVGR 296

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
                  +++I R+++      +  D I G P E    F+ + D +
Sbjct: 297 IQNNERLKEVIARLKAS--GCIMHVDLIAGLPYEDIASFQTSFDTL 340


>gi|110597181|ref|ZP_01385470.1| Cobalamin B12-binding:Radical SAM [Chlorobium ferrooxidans DSM
           13031]
 gi|110341372|gb|EAT59837.1| Cobalamin B12-binding:Radical SAM [Chlorobium ferrooxidans DSM
           13031]
          Length = 607

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 61/316 (19%), Positives = 103/316 (32%), Gaps = 30/316 (9%)

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135
           A   +     +   L  +RI +     VV+ G    A  +E+L+   +  VV+G      
Sbjct: 72  AISSMTGAFNQAERL--ARIAKDAGAFVVMGGFHPTALPDEVLKLDCVDAVVIGEGEVTF 129

Query: 136 LPELLERA---------RFGKRVV------DTDYSVEDKFERLSIVDGGYNRKRGVTAFL 180
              +L            + G  +V      +       +F   S+    Y  K    +  
Sbjct: 130 RELVLHGPSRDVKGLGYKEGGEIVYTGVRENIADINAIRFPLRSLRPERYGEKGDAYSID 189

Query: 181 TI--QEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK 238
           TI    GC   C+FC           RS   VV+E   L D    ++  +          
Sbjct: 190 TIYTSRGCPWSCSFCANDQMHKGWRGRSAENVVEEIALLHDPDNKKLIKI-------WDA 242

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL-MPYLHLPVQS 297
                      +   L E +GL   R  T           +  G L  + +  + L ++S
Sbjct: 243 NFLTNIPRAEKICDLLIE-RGLTNFRIMTESRAKDIVRAERILGKLQKIGLSKVGLGIES 301

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
            +   L+ MN+++T  +  + I   R     I     FI+G   E + D     +    +
Sbjct: 302 PNAATLELMNKKNTLDDVAKAIALCRQY--SIGAEGYFIIGHYTENEQDTMVYPEFAKSL 359

Query: 358 GYAQAFSFKYSPRLGT 373
           G   A     +P  GT
Sbjct: 360 GLRHALFMIMTPYPGT 375


>gi|317133529|ref|YP_004092843.1| Radical SAM domain protein [Ethanoligenens harbinense YUAN-3]
 gi|315471508|gb|ADU28112.1| Radical SAM domain protein [Ethanoligenens harbinense YUAN-3]
          Length = 562

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 56/334 (16%), Positives = 104/334 (31%), Gaps = 39/334 (11%)

Query: 36  MNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRI 95
           +N  D   +  +  ++        D     VL  C             + ++R L     
Sbjct: 39  VNRDDRSILRGLMEAR-------PD-----VLGFCT--------YLFNIEQVRALAADVR 78

Query: 96  KEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG--------- 146
               + ++V  G  A  + + + R  P V+ VV  +       LL   R G         
Sbjct: 79  ALLPETVIVFGGPEAGLDPD-VFRACPAVDFVVRGEGETAFRALLLALRDGLDTHIPGVA 137

Query: 147 KRVVDTDYSVEDKFERLSIV--DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            R  D   + E     L     D       G   +     GC   C +C+     G    
Sbjct: 138 SRERDCPPAAEPDLGSLPSPYTDEMLAASAGRILYYEASRGCPFRCAYCLSSLGGGA-RF 196

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
             L +V  E  +++D+   ++  + +  N      L   K     +L    E   +    
Sbjct: 197 FPLDRVRAELARVLDSPARQVKFVDRTFNCR----LSRAKEIVRAVLELAEENPAIAARH 252

Query: 265 YTTSHPRD-MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
                  D   + L+         +  L + +QS     L +++R          I  + 
Sbjct: 253 VHFEVAADLFDEELLDLFASAPPGLFQLEIGIQSFHAPTLAAVHRASDLARCAAAIAHLC 312

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
           + R ++ + +D I G P E    F  + D +  +
Sbjct: 313 APR-NVHVHTDLIAGLPLEDYMTFARSFDTLHAL 345


>gi|146297300|ref|YP_001181071.1| radical SAM domain-containing protein [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145410876|gb|ABP67880.1| Radical SAM domain protein [Caldicellulosiruptor saccharolyticus
           DSM 8903]
          Length = 536

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 46/289 (15%), Positives = 100/289 (34%), Gaps = 20/289 (6%)

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135
           A          +  L     K   D+ +++ G        + L     V++++  +  Y 
Sbjct: 58  AISTYIWNRSYVEKLVEGLKKARKDIKIILGGP---EVYFDSLDEWKFVDIIIRGEGEYP 114

Query: 136 LPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
             +L +    G++    +Y   D   +L          +    +     GC   CT+C+ 
Sbjct: 115 FLDLCDHIAAGRQYTQKEYPPFD-LNKLPFAYKDEKLDQSRIYYYESSRGCPFRCTYCL- 172

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
                     SL +V +E   L    V  I  + +  NA + + +  +   F       +
Sbjct: 173 SSIEKSVRFASLEKVFEELDYLFKKQVRLIKFVDRTFNANKERAI--KIIEFCKQKSQAT 230

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
           +I       +    P  +   +I A       +  L + +QS + + L +++R +   + 
Sbjct: 231 QI-------HFEIDPTLLDSDIITAINTSKDNLFRLEIGLQSFNPQTLDAIDRFYDIDKI 283

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD-----LVDKIGY 359
            + +  +   +  I +  D I G P E    F+ ++D       D++  
Sbjct: 284 DKNLKELMENKKAI-VHLDLIAGLPYEDFLSFKRSLDKTILYFADEVQL 331


>gi|326779437|ref|ZP_08238702.1| oxygen-independent coproporphyrinogen III oxidase [Streptomyces cf.
           griseus XylebKG-1]
 gi|326659770|gb|EGE44616.1| oxygen-independent coproporphyrinogen III oxidase [Streptomyces cf.
           griseus XylebKG-1]
          Length = 413

 Score = 68.4 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 44/210 (20%), Positives = 75/210 (35%), Gaps = 28/210 (13%)

Query: 186 CDKFCTFCVV--------PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG 237
           C   C +C            + G   SR      + A  LI+       +LG +    R 
Sbjct: 42  CATRCGYCDFNTYTATELRGSGGALASRD-----NYAAHLIEEVRQARKVLGDDPRPVRT 96

Query: 238 KGLDGEKCTF---SDLLYSLSEIKGLVRLRYTTSHPRDMSDC-------LIKAHGDLDVL 287
             + G   T    +DL+  L+ I    R  +  +   +++                 +  
Sbjct: 97  VFVGGGTPTLLPAADLVRMLAAI----REEFGLADDAEITTEANPESVDPAYLTALREGG 152

Query: 288 MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDF 347
              +   +QS    +LK ++R HT       +   R+   D  ++ D I G PGE+DDD+
Sbjct: 153 FNRVSFGMQSAKQHVLKILDRTHTPGRPEACVAEARAAGFD-HVNLDLIYGTPGESDDDW 211

Query: 348 RATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
           RAT+D     G     ++      GT  + 
Sbjct: 212 RATLDAAIGAGPDHVSAYALIVEEGTQLAR 241


>gi|291547941|emb|CBL21049.1| Fe-S oxidoreductase [Ruminococcus sp. SR1/5]
          Length = 404

 Score = 68.4 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 35/212 (16%), Positives = 77/212 (36%), Gaps = 18/212 (8%)

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTA-FLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209
           + + +VE+                  T   +    GC   C FC +P+ R      S+  
Sbjct: 105 EIELTVEEMENTPYPAYELLPSSNPYTQLPVETSRGCRFSCAFCSIPH-RRNWRGLSVEH 163

Query: 210 VVDEARKLID-----NGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           V+   +  +      N    +  +     A      +GE+    ++   L  + G     
Sbjct: 164 VIKRVKHALQFKDNINRGTRLLFVDDCFTA------NGERA--INVFKKLHRLYGYTEKV 215

Query: 265 YTTSHPRDMSDCLIKAHGDLD-VLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           +  +   D+    I    ++   ++  + + V+ G +  LK + +  T  +    ++ ++
Sbjct: 216 FIEARVTDILKNQI--LQNIPLQMVSSMQIGVECGYNEGLKKIRKGLTVEQLFSALEILK 273

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
             + D      FI+GFP ET +    T+D ++
Sbjct: 274 QYQFDKHCFLSFIIGFPWETMEMINKTLDTIE 305


>gi|218777946|ref|YP_002429264.1| radical SAM domain protein [Desulfatibacillum alkenivorans AK-01]
 gi|218759330|gb|ACL01796.1| Radical SAM domain protein [Desulfatibacillum alkenivorans AK-01]
          Length = 496

 Score = 68.4 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 53/337 (15%), Positives = 109/337 (32%), Gaps = 47/337 (13%)

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           GR+  L         ++ VV+ G +A + G E++R+ P   +V+G +       LLE   
Sbjct: 81  GRVGVLIPFLKDNFPNIPVVLGGPLASSVGPELMRQVPADYLVMG-EGEKAFVSLLEMFE 139

Query: 145 FG--------------------------KRVVDTDYSVEDKFERLSI------VDGGYNR 172
            G                          K ++D        ++ + +             
Sbjct: 140 QGLSHPGREVSGLAFSDPDGKTVCWPKNKDLIDIKSIPFPAYDLIDLKKYQYQPRMTPMS 199

Query: 173 KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNV 232
            +   A++    GC   C +C   +++     R +      A ++++     IT  G + 
Sbjct: 200 TKEPYAYIMTSRGCPYHCIYCHDIFSKKF---RPMD-----ALQVVNEIERLITDFGIHE 251

Query: 233 NAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM-SDCLIKAHGDLDVLMPYL 291
                   +  +     +   +          +      D+    +++A   +     ++
Sbjct: 252 FEIIDDVFNLNRKRVLAICSEIKRRGLKTAFTFPNGLRSDILDREVLEALASVGTY--HI 309

Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351
            + V+S S RI K   +     +  +       +   I     F++GFP ET  +   T+
Sbjct: 310 DVAVESASPRIQKLAQKNINLEKLEENAVIASEL--GIFCWGLFMLGFPTETRREILKTL 367

Query: 352 DLVDKIGYAQAFSFKYSPRLGTP-GSNMLEQVDENVK 387
               K     AF F   P+ GT        +   + K
Sbjct: 368 FWAWKSPMHGAFFFIVIPQEGTELARKYCNKKPGDSK 404


>gi|76154666|gb|AAX26104.2| SJCHGC07561 protein [Schistosoma japonicum]
          Length = 218

 Score = 68.4 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 34/182 (18%), Positives = 57/182 (31%), Gaps = 65/182 (35%)

Query: 21  CIVPQRFFV--KSYGCQMNVYDSLRMEDMFFSQGYERV---------------------- 56
             +P+RF +  +++GC  N  DS  M  +    G++                        
Sbjct: 40  SYLPERFHIFVQTWGCAHNTSDSEYMTGLLAKYGFQVTLDGSQCVNGSELKTNINSTSDL 99

Query: 57  ------NSMDD-----------------------ADLIVLNTCHIREKAAEKVYSFLGRI 87
                 N+ D+                       AD+ VLN+C ++  A +   + +   
Sbjct: 100 PCECQRNNDDECCSGERILNRRKDMSPHFNSKMKADIWVLNSCTVKGPAEDHFRNAVLEG 159

Query: 88  RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147
             L            VV  GCV Q+       +   V   VG     R+ E++E    G 
Sbjct: 160 LKL---------GKRVVACGCVPQSRPGADYLKGVSV---VGVHQIDRIVEVVEETLQGN 207

Query: 148 RV 149
            V
Sbjct: 208 VV 209


>gi|148269303|ref|YP_001243763.1| radical SAM domain-containing protein [Thermotoga petrophila RKU-1]
 gi|147734847|gb|ABQ46187.1| Radical SAM domain protein [Thermotoga petrophila RKU-1]
          Length = 599

 Score = 68.4 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 42/226 (18%), Positives = 86/226 (38%), Gaps = 17/226 (7%)

Query: 177 TAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAW 235
            A + +  GC + C FC           RSL  +++   +++ N G  E++LL  +    
Sbjct: 251 RAIIEVARGCTRGCRFCHASVYYRPVRERSLENILENVEEMLKNTGYEEVSLLSLSTMDH 310

Query: 236 RGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPV 295
              G        S+LL   SE K  V +  T          +      +      L    
Sbjct: 311 TQIGE-----IVSELLKRYSEKKIAVSIPSTRMDR--FGVEIAGRIASVRK--TGLTFAP 361

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFR---ATMD 352
           ++ + R+   +N+  +  +    ++  +       +   F++G PGET++D       ++
Sbjct: 362 EAATQRLRNIINKNISEEDIFATLEAAKKSGWR-RVKLYFMMGLPGETNEDLEEMVELLE 420

Query: 353 LVDKIGY--AQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQK 396
            V ++G+    A    + P+  TP      Q+      E++  L++
Sbjct: 421 RVKRLGFKEVSASVSVFVPKPHTP-FQFARQISPEEAYEKIKTLKR 465


>gi|85712998|ref|ZP_01044036.1| Lipoate synthase [Idiomarina baltica OS145]
 gi|85693167|gb|EAQ31127.1| Lipoate synthase [Idiomarina baltica OS145]
          Length = 321

 Score = 68.4 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 35/216 (16%), Positives = 73/216 (33%), Gaps = 12/216 (5%)

Query: 153 DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVD 212
            + +    E  S  +       G  +F+ + + C + C FC V    G  +     + V 
Sbjct: 61  SHGLHSVCEEASCPNLPECFNHGTASFMILGDICTRRCPFCDV--AHGRPLPPDPEEAVK 118

Query: 213 EARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
             + + D GV  + +   +    R    DG    F+D +  + +    +++       R 
Sbjct: 119 LGKTIHDMGVKYVVITSVD----RDDLRDGGAQHFADCVREIRKYTPEIQVEILVPDFRG 174

Query: 273 MSDCLIKAH-GDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAI 331
                +    G+   +  +    V     R+ K+            ++ + +  RPD+  
Sbjct: 175 RMKVALDILSGEAPDVFNHNLETV----PRLYKAARPGANYQWSLDLLKKYKEARPDVRT 230

Query: 332 SSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
            S  +VG  GET ++    M  +           +Y
Sbjct: 231 KSGLMVGL-GETKEEILEVMRDLRAHDCDMLTIGQY 265


>gi|187922511|ref|YP_001894153.1| lipoyl synthase [Burkholderia phytofirmans PsJN]
 gi|187713705|gb|ACD14929.1| lipoic acid synthetase [Burkholderia phytofirmans PsJN]
          Length = 335

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 83/220 (37%), Gaps = 10/220 (4%)

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
           + +  ++++    E  S  + G    +G   F+ + + C + C FC V + R   +   +
Sbjct: 70  KQILREHNLHTVCEEASCPNIGECFGKGTATFMIMGDKCTRRCPFCDVGHGRPDPL--DV 127

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
            +  + AR +    +  + +   +    R    DG    F + +    E+    R+   T
Sbjct: 128 DEPGNLARTIAALKLKYVVITSVD----RDDLRDGGAAHFVECIRQTRELSPETRIEILT 183

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
               D    L +A G L+   P +         R+ K            +++   +++ P
Sbjct: 184 P---DFRGRLDRAIGILNAAPPDVMNHNLETVPRLYKEARPGSDYAHSLKLLKDFKALHP 240

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           D+A  S  +VG  GET+++    M  + +         +Y
Sbjct: 241 DVATKSGLMVGL-GETEEEILQVMRDLREHNVDMLTIGQY 279


>gi|303235933|ref|ZP_07322536.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Prevotella disiens FB035-09AN]
 gi|302483806|gb|EFL46798.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Prevotella disiens FB035-09AN]
          Length = 388

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 49/247 (19%), Positives = 89/247 (36%), Gaps = 36/247 (14%)

Query: 186 CDKFCTFC-----VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL 240
           C   C +C     + P TR   I R    VV   ++L++          Q+ N       
Sbjct: 11  CASRCIYCGFYSTLTPKTRTETIDR---YVVAVCKELVEQ--KNFVF--QDNNETLETIY 63

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTT-------------SHPRDMSDCLIKAHGDLDVL 287
            G           + +I   +   Y+               +P D+++   +      + 
Sbjct: 64  FGGGTPSQLAPQHIEKIFQTIEDNYSDKMEKLADMEISFECNPDDVTEEFAENMCHFPI- 122

Query: 288 MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI-RSVRPDIAISSDFIVGFPGETDDD 346
              + +  Q+ S+  LK + RRH A + +  IDR+ R+   +I+I  D + GFP ET  +
Sbjct: 123 -NRISMGAQTFSEARLKFLRRRHKANDVKMAIDRLHRADIHNISI--DLMFGFPEETLQE 179

Query: 347 FRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK--AERLLCLQ--KKLREQQ 402
           +   ++    +      ++      GTP   +LEQ    VK   E L      K +    
Sbjct: 180 WEDDIEKAIALNVEHLSAYSLMYEEGTPLYRLLEQ--GKVKDMDEELYRTMYDKLIDRLV 237

Query: 403 VSFNDAC 409
            +  +  
Sbjct: 238 AAHYEQY 244


>gi|302349095|ref|YP_003816733.1| Fe-S oxidoreductase [Acidilobus saccharovorans 345-15]
 gi|302329507|gb|ADL19702.1| Fe-S oxidoreductase [Acidilobus saccharovorans 345-15]
          Length = 504

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 54/325 (16%), Positives = 106/325 (32%), Gaps = 36/325 (11%)

Query: 101 LLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKF 160
             +++ G    A  E     +   + ++          L E    G  +  +++     +
Sbjct: 111 PKIIMGGPAVTANPE---PMADAADAIIMGDLEPSSLWLEEVLNEGAPIEPSEHVYVPSY 167

Query: 161 ERLSI-------VDGGYNRKRGVTAFLTIQ----EGCDKFCTFCVVPYTRGIEISRSLSQ 209
               +       + G   R     A  TI      GC   C FC+  Y       R    
Sbjct: 168 GPHEVRIASSGEIRGDPRRVMAPEAAFTIAVELVRGCPFSCIFCMDSYITKPFRPRPADD 227

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSH 269
           VV EAR+L       + ++G  VNA            F ++L SL      +R    +  
Sbjct: 228 VVREARQLYQRYKERVAMIGLTVNAS---------PWFKEVLSSLLSEG--IRFSLPSMR 276

Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA-YEYRQIIDRIRSVRPD 328
              + +  +              + +   + + L+    + +   ++ ++ +R   +   
Sbjct: 277 AELLDEESVGLIAS----AGQRTITLAPETSQRLRFALGKSSRNEDFLRVAERAGKL--G 330

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR---LGTPGSNMLEQVDEN 385
           + +    +VG PGE + D R   +LV  +          +P      TP   +  + DE 
Sbjct: 331 LTVKLYMMVGVPGEREGDLREAAELVKSVSQVARVELSVNPLIIKPQTPLQWLPMK-DEG 389

Query: 386 VKAERLLCLQKKLREQQVSFNDACV 410
               RL   ++ +     SF D  +
Sbjct: 390 ELNRRLRLFRELVPGVNFSFYDPFL 414


>gi|294498003|ref|YP_003561703.1| cobalamin binding domain-containing protein [Bacillus megaterium QM
           B1551]
 gi|294347940|gb|ADE68269.1| cobalamin binding domain protein [Bacillus megaterium QM B1551]
          Length = 589

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 63/368 (17%), Positives = 125/368 (33%), Gaps = 42/368 (11%)

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +     +     K   +L+++  G     +    L R P  + +   +      +LL+  
Sbjct: 67  IEETIKVAQMLKKINPELIIIFGGPEVTYDVTHWLERIPEADFIAIGEGEETFKQLLDEL 126

Query: 144 ---------------RFGKRVVDTDYSVEDKFERLSIVDGGYNRK--RGVTAFLTIQEGC 186
                          + GK VV+   +  D  E  S      +R+       ++    GC
Sbjct: 127 HGDRQFENVSGVAFRKDGKPVVNPQRNKIDLREMPSPFRFEEDRQELSKRVVYIETSRGC 186

Query: 187 DKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT 246
              C FC+     G        +V ++ R L+DNG   I  + +  N  R   ++  +  
Sbjct: 187 PFSCQFCLSSIEVG-VRYFDREKVKEDIRYLMDNGARTIKFVDRTFNISRSYAMEMFQFL 245

Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL-DVLMPYLHLPVQSGSDRILKS 305
             +        +G V     T+    M   +I+   D     +    + VQS +D + + 
Sbjct: 246 IDEHR------EGTVFQFEITADI--MRPEVIQFLNDNAPKGLFRFEIGVQSTNDAVNEL 297

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           + R+    +  + +  ++     I    D I G P E  + F+ T + V  +   +    
Sbjct: 298 VKRKQNFKKLTRTVTMVKEG-GKIDQHLDLIAGLPDEDYNSFKNTFNDVFALRPEELQLG 356

Query: 366 KYSPRLGT--------PGSNMLEQVDENVKAERLLCLQKKLREQQVS------FNDACVG 411
                 GT             ++Q    + +  +L     +R + V       +ND  + 
Sbjct: 357 FLKMLRGTGLRLSASRYNYQYMDQSPYEILSNNVLPFSDVVRIKHVEDILEKFWNDHRMD 416

Query: 412 QIIEVLIE 419
           + IE L+E
Sbjct: 417 ETIEFLVE 424


>gi|154496242|ref|ZP_02034938.1| hypothetical protein BACCAP_00527 [Bacteroides capillosus ATCC
           29799]
 gi|150274325|gb|EDN01402.1| hypothetical protein BACCAP_00527 [Bacteroides capillosus ATCC
           29799]
          Length = 409

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 33/191 (17%), Positives = 65/191 (34%), Gaps = 6/191 (3%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG--KGLDGE 243
           C   C +C      G E    +          I            +   + G      GE
Sbjct: 14  CRSKCDYCDFYSLSGRED--RMDDYQKALLAHIKETAPFAKGYQVDTIYFGGGTPSFYGE 71

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
           K   ++L+ ++ +   + R    T      S  +          +  L L  Q+  D+ L
Sbjct: 72  K-RIAELVRAVKKRFDVSREAEVTMEANPDSVDVKMLRRLRRAGVNRLSLGAQTACDQEL 130

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           ++++R HT  +  Q +   R  +    +S D I G PG+    ++ +++ +  +      
Sbjct: 131 RAIHRPHTFEQTCQAVAAAREAKIK-NLSLDLIYGLPGQDMASWQESVEQILALKPEHLS 189

Query: 364 SFKYSPRLGTP 374
            +      GTP
Sbjct: 190 CYGLKVEEGTP 200


>gi|81299610|ref|YP_399818.1| Elongator protein 3 [Synechococcus elongatus PCC 7942]
 gi|81168491|gb|ABB56831.1| Elongator protein 3 [Synechococcus elongatus PCC 7942]
          Length = 526

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 48/306 (15%), Positives = 100/306 (32%), Gaps = 38/306 (12%)

Query: 79  KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPE 138
           +++  LG I+  +    +   ++  VV G       E++  +     +V    +      
Sbjct: 120 ELWRNLGLIKRAQKRAQRYCPEVRTVVGGGAVSVFYEQLGDKLAKGTIV----SVGEGET 175

Query: 139 LLERARFGKRVVDTDYSV------------------------EDKFERLSIVDGGYNRKR 174
           LLE+   G+ + +    V                         D  E +    G Y    
Sbjct: 176 LLEKLLRGESIANERCYVAGAEKPRSRLIHEQPTPLIKTACNYDYIESIWPAFGYYLADG 235

Query: 175 GVTAFLTIQEGCDKFCTFCVVPYTRGIEISR-SLSQVVDEARKLIDNGVCEITLLGQNVN 233
                +  + GC   C +CV     G ++     ++VV E R+L D GV           
Sbjct: 236 DFYIGVQTKRGCPHNCCYCVYTVVEGKQVRVNPAAEVVAEMRQLYDRGVRNFWFTDAQFI 295

Query: 234 AWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY-TTSHPRDMSDCLIKAHGDLDVLMPYLH 292
             R    D +      L   L+   GL  + +       ++   L +        M Y  
Sbjct: 296 PARRYIEDAK----VLLREILAA--GLTDIHWAAYIRADNLDPELAELMVQTG--MNYFE 347

Query: 293 LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352
           + + SGS  +++ M   +      +    +++   +  +S ++      E ++  R T+ 
Sbjct: 348 IGITSGSQELVRKMRMGYNLRTVLENCRALKAAGFNDLVSVNYSFNVIDEREETIRQTIA 407

Query: 353 LVDKIG 358
              ++ 
Sbjct: 408 YHRELE 413


>gi|72161239|ref|YP_288896.1| coproporphyrinogen III oxidase [Thermobifida fusca YX]
 gi|71914971|gb|AAZ54873.1| coproporphyrinogen III oxidase, anaerobic [Thermobifida fusca YX]
          Length = 410

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 45/251 (17%), Positives = 82/251 (32%), Gaps = 19/251 (7%)

Query: 172 RKRGVTAFLTIQEGCDKFCTFCVV-PYTRGIEISRS---LSQVVDEARKLIDNGVCEITL 227
           R  G    +     C   C +C    YT     SR    ++     A + I        +
Sbjct: 28  RPFGFYVHVPF---CATRCGYCDFNTYTAAELRSRDGTAVASPRTYADQAIAEIALARRV 84

Query: 228 LGQNVNAWRGKGLDGEKCTFS---DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKA---H 281
           LG      R   + G   T     +L   L  I     L        + +   + A    
Sbjct: 85  LGDRELPVRTVFMGGGTPTLLSPEELGRILDAIDAQFGLAPDAEITTEANPETVDAGILA 144

Query: 282 GDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPG 341
              +     +   +QS    +L  + R HT     Q +   R       ++ D I G PG
Sbjct: 145 RLREAGFTRISFGMQSAKAHVLAVLERTHTPGRPEQCVAWARQA-GFAHVNLDLIYGTPG 203

Query: 342 ETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ-----VDENVKAERLLCLQK 396
           E+D D++ ++      G     ++      GT  +  + +      D++V A+R +   +
Sbjct: 204 ESDADWKESLTAAIAAGPDHISAYSLIVEEGTRLAARVRRGELTPFDDDVLADRYIMADE 263

Query: 397 KLREQQVSFND 407
            L    + + +
Sbjct: 264 LLSAAGLQWYE 274


>gi|150017215|ref|YP_001309469.1| hypothetical protein Cbei_2353 [Clostridium beijerinckii NCIMB
           8052]
 gi|149903680|gb|ABR34513.1| Radical SAM N-terminal domain protein [Clostridium beijerinckii
           NCIMB 8052]
          Length = 659

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 43/297 (14%), Positives = 94/297 (31%), Gaps = 49/297 (16%)

Query: 125 NVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTI-- 182
           +++V       + + +  A   +  +D  Y +    +   + +G    K G+ A   +  
Sbjct: 247 HIIVQKHGSKYVVQNIPEAPLNREELDEVYGLPYMRDYHPVYEG----KGGIAAIEEVKF 302

Query: 183 ----QEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLID---------------NGV 222
                 GC   C FC + + +G  + SRS   ++ E   +                    
Sbjct: 303 STVSSRGCFGDCKFCAITFHQGRVVQSRSKESILQEVEDITKLPDFKGYIHDVGGPTANF 362

Query: 223 CEITLLGQ----------NVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR------LRYT 266
            +     Q           ++    + +D +   + DLL S+ ++  + +      LRY 
Sbjct: 363 RKPACSKQLAFGACKNKECLSPDVCRNMDVDHTEYLDLLRSIRKVPKVKKAFVRSGLRYD 422

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
                       +       +   L +  +  S  +LK M +      Y + +++   + 
Sbjct: 423 YIMADKDDTFFKELV--EHHVSGKLKVAPEHISKDVLKYMGKPA-GETYDKFVNKFEKIT 479

Query: 327 PDIA----ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
             +     I    +   PG T +      + +  I Y       + P  GT  + M 
Sbjct: 480 KKLGKKQYIIPYLMSSHPGSTLECAIELAEYLRDINYQPEQVQDFYPTPGTLATTMY 536


>gi|34499320|ref|NP_903535.1| hypothetical protein CV_3865 [Chromobacterium violaceum ATCC 12472]
 gi|34105171|gb|AAQ61527.1| conserved hypothetical protein [Chromobacterium violaceum ATCC
           12472]
          Length = 538

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 46/238 (19%), Positives = 88/238 (36%), Gaps = 29/238 (12%)

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTI-----------QEGCDKFCTFCVVPY 197
           + + D   +  ++ + + D   N    + A+ +I             GC   CTFC    
Sbjct: 175 ISNLDDIPDLDYDCIDLTDYHLNPT--IKAYTSIGDRTNYITYMGSRGCPFHCTFCAAHT 232

Query: 198 TRGI-EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256
             G    S ++ ++  E   L D       ++  ++  W       +K   + +L    +
Sbjct: 233 VHGRKMRSFTIDRIERELSGLCDKYAPNTLVIEDDMFLW-------DKSWATSVLKIAQK 285

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
           +K         +        L + H      +  L L V+SGS R+LK + ++       
Sbjct: 286 LKLTCFFPNALALYALDRPMLEELHRTG---VRQLTLAVESGSARVLKEVMKKPLK---L 339

Query: 317 QIIDRIRSVRPDIAISSD--FIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
            I +R+     D+ I +D   I+G PGET +D + T + +  +          +P  G
Sbjct: 340 SITNRVVEDCRDLGIYTDCNIIIGMPGETLNDIKDTREFLKSLDANWYRINVATPLAG 397


>gi|168186677|ref|ZP_02621312.1| magnesium-protoporphyrin IX monomethyl ester oxidative cyclase
           [Clostridium botulinum C str. Eklund]
 gi|169295305|gb|EDS77438.1| magnesium-protoporphyrin IX monomethyl ester oxidative cyclase
           [Clostridium botulinum C str. Eklund]
          Length = 590

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 40/219 (18%), Positives = 77/219 (35%), Gaps = 19/219 (8%)

Query: 157 EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARK 216
            D  + +   D   N K  +  +     GC   C +C+    R     R++  V  E + 
Sbjct: 185 MDINQVIFPYDENDNLKNKIVYYEA-SRGCPYGCKYCLSSVDRN-LRFRNIETVKKELKY 242

Query: 217 LIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY-TTSHPRDMSD 275
            ID  V  +  + +  NA     +D     F         I      ++        +++
Sbjct: 243 FIDKEVRLVKFVDRTFNANEKFAID--IWDFL--------IGQDTNTKFHFEISANILTE 292

Query: 276 CLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDF 335
                            + VQ+ ++ IL+++NR     +  + ++ I+ +  +I+   D 
Sbjct: 293 NQFNVLSRAPKGRLQFEVGVQTTNNEILRNINRYVNFEDMEEKVEEIKKLN-NISQHLDL 351

Query: 336 IVGFPGETDDDFRATMDLV-----DKIGYAQAFSFKYSP 369
           I G PGE    F  + + V     ++I        K SP
Sbjct: 352 IAGLPGENLKSFINSFNDVYSIKPEEIQLGFLKLLKGSP 390


>gi|251777874|ref|ZP_04820794.1| putative cobalamin-dependent enzyme [Clostridium botulinum E1 str.
           'BoNT E Beluga']
 gi|243082189|gb|EES48079.1| putative cobalamin-dependent enzyme [Clostridium botulinum E1 str.
           'BoNT E Beluga']
          Length = 554

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 81/220 (36%), Gaps = 14/220 (6%)

Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           L     GK   +    +    + +   +   +    +  +     GC   C +C+   + 
Sbjct: 138 LHYKLDGKVSSNEKRPLMSMDDLVFPYEENEDLNNKIVYYEA-SRGCPFNCKYCLSSTSH 196

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G     S+ +V+ E +  ID  V  +  + +  N      +   K            I+ 
Sbjct: 197 G-VRFLSIERVLKELQYFIDKKVRLVKFVDRTFNCNHKFSMAIWKFL----------IES 245

Query: 260 LVRLRYTTSHPRDM-SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
               ++      D+  +  IK             + VQ+ +D++L ++NR     + ++ 
Sbjct: 246 NTETKFHFEISADILKEEEIKLLSKAPKGRFQFEVGVQTTNDKVLNNINRFVNFEDIKEK 305

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           +D + +++ +I    D I G PGE  + F  + + V KI 
Sbjct: 306 VDELMAIK-NIQQHLDLIAGLPGEDYESFVNSFNDVYKIR 344


>gi|302343375|ref|YP_003807904.1| hypothetical protein Deba_1945 [Desulfarculus baarsii DSM 2075]
 gi|301639988|gb|ADK85310.1| Protein of unknown function DUF2344 [Desulfarculus baarsii DSM
           2075]
          Length = 834

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 53/269 (19%), Positives = 96/269 (35%), Gaps = 33/269 (12%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGK 238
           + I  GC + C FC   +       R L Q ++ A + +   G+ E+ LL   ++A    
Sbjct: 258 VEIARGCTRGCRFCQAGFIYRPVRERPLGQALNAALEGLACTGMEELALLS--LSAGDYS 315

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
            ++       D    L      V L   +     +S  LI     +        L  ++G
Sbjct: 316 AIEPLARALMDACEPL-----KVSLSLPSLRVDSLSQELIAQIKRVRK--TGFTLAPEAG 368

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI- 357
           S+ + + +N+  T  +       +  +  ++ I   F++G PGE+D D  A   L  ++ 
Sbjct: 369 SEHMRRRINKDLTEEQILDTARLVYGLGWNL-IKLYFMIGLPGESDSDVEAIGQLARQVA 427

Query: 358 -------------GYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKL--REQQ 402
                            A    + P+  TP      Q+D     +RL   +  L     +
Sbjct: 428 QQALAAGRGRGKKPLVHASIGIFVPKPHTP-FQWEGQLDLAQAEQRLRLAKASLGDSRLR 486

Query: 403 VSFNDACVGQIIEVLIEKHGKEKGKLVGR 431
             +NDA     + VL E       + + R
Sbjct: 487 AKWNDA----RLSVL-EGVLARGDRRLSR 510


>gi|163753803|ref|ZP_02160926.1| Radical SAM domain protein [Kordia algicida OT-1]
 gi|161326017|gb|EDP97343.1| Radical SAM domain protein [Kordia algicida OT-1]
          Length = 506

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 44/210 (20%), Positives = 81/210 (38%), Gaps = 25/210 (11%)

Query: 185 GCDKFCTFC-VVPYTRGIEISRSLSQVVDEARKLIDNGVCEIT-LLGQNVNAWRGKGLDG 242
           GC   C+FC VVP       +++ S +  + +   +    +       N    R + ++ 
Sbjct: 203 GCPFTCSFCAVVPIYNAKWKAKAASTIYKDLKYFKEKYQIDAVEFHDNNFFTSRKRVMEF 262

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
            K    D       I+     R  T +    SD  +            + L  ++G+D +
Sbjct: 263 SKLVMDD------NIEWWGEGRIDTINK--YSDEDLHYMRKAG--CRMMFLGAETGNDEV 312

Query: 303 LKSMNRRHT--AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT----MDLVDK 356
           LK MN+  T      +  + R++ V  DI     F++G PGE +          ++ + +
Sbjct: 313 LKQMNKGGTQSGQMIKDFVKRMKDV--DIIPELSFVLGLPGENEQKVYEQILWDINFIRE 370

Query: 357 IGY----AQAFSFKYSPRLGTPGSNMLEQV 382
           I      A+   + YSP   T GS + +Q+
Sbjct: 371 IKAINADAEIIIYLYSPVP-TEGSELYQQI 399


>gi|119433794|gb|ABL74954.1| Tlm Orf11 [Streptoalloteichus hindustanus]
          Length = 424

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 46/264 (17%), Positives = 82/264 (31%), Gaps = 34/264 (12%)

Query: 164 SIVDGGYNRKRGVTAFLTIQEGCDKFCTFC--VVPYTRGIEISRSLSQVVDEARKLIDNG 221
            +V    N+K  V   +     C   C FC  V         S    +        +D  
Sbjct: 16  EVVRNHPNKKLAVYVHIPF---CSSKCHFCDWVTDIPVRRLRSGPEGR-----ASYVDAL 67

Query: 222 VCEITLLGQNVNAWRGK---GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSH--------- 269
             +I   G  +  +  +      G           +  I+  +   +  S          
Sbjct: 68  CDQIRFYGPQLTRFGYRPKVMYWGGGTPTRLAPEEMRAIRAALDDSFDFSDLVQWTVETT 127

Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329
           P D+    + A  ++   +  + + VQS +   L+   R H+  +       +R     I
Sbjct: 128 PNDLDAEKLAAMREIG--VDRVSVGVQSLNPYQLRKAGRAHSREQALAAFPLLRQA--GI 183

Query: 330 A-ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
              + D I  FPGE  + FR T++ +  +       + Y     TP + M  Q+D     
Sbjct: 184 TNFNVDLISSFPGEDQESFRRTVEDILALDPPHVSVYPYRA---TPKTVMAMQLDREF-- 238

Query: 389 ERLLCLQKKLREQQVSFNDACVGQ 412
             L   Q+             +GQ
Sbjct: 239 --LEAHQQHDMVATYEMAMEMLGQ 260


>gi|226324155|ref|ZP_03799673.1| hypothetical protein COPCOM_01934 [Coprococcus comes ATCC 27758]
 gi|225207704|gb|EEG90058.1| hypothetical protein COPCOM_01934 [Coprococcus comes ATCC 27758]
          Length = 620

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 46/290 (15%), Positives = 99/290 (34%), Gaps = 31/290 (10%)

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           L  +  +     K    +++ + G     +G ++L R P V+ V+  +      +LL   
Sbjct: 105 LTYVEEICREIKKVMPQIIIWIGGPEVSYDGVKVLERLPEVDGVMKGEGEQTFCDLLHFY 164

Query: 144 RFG-----------------KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGC 186
           +                    ++V+ ++    +  ++  V            +     GC
Sbjct: 165 QEKTADGFQNMKGIVYREQTGQIVENEWRKTMELSKVPFVYENMELFEHKIIYYETSRGC 224

Query: 187 DKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT 246
              C++C+          R L  V  E +  ID+ V ++  + +  N      +   +  
Sbjct: 225 PFSCSYCL-SSIDKCLRFRDLELVKKELQFFIDHKVPQVKFVDRTFNCKHDHAMTVWRYI 283

Query: 247 FSDLLYSLSEIKGLVRLRYTTSHP--RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304
                       G+    +  +     +    LIK       L+  L + VQS +   ++
Sbjct: 284 KEHD-------NGITNFHFEVAADLLNEEEMELIKTMR--PGLI-QLEIGVQSTNLDTIR 333

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
            ++R     +  +++ RI S   ++    D I G P E  + F  + D V
Sbjct: 334 EIHRTMKFEQVAEVVRRINSY-GNVHQHLDLIAGLPYEDYESFGKSFDDV 382


>gi|153869009|ref|ZP_01998716.1| Cobalamin B12-binding protein [Beggiatoa sp. PS]
 gi|152074433|gb|EDN71288.1| Cobalamin B12-binding protein [Beggiatoa sp. PS]
          Length = 503

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 35/243 (14%), Positives = 81/243 (33%), Gaps = 20/243 (8%)

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKR-----GVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           RV D D   E  ++   + +   +        G +  +    GC   C FC  P   G  
Sbjct: 181 RVRDVDSFPEPAWDLFPLRNYIDSGDMIGVNIGRSMPMLASRGCPYECAFCSNPIMWGRL 240

Query: 203 -ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK-GL 260
             +R    ++ E ++ I                +       +K     +   + E    +
Sbjct: 241 WKARDPELLLAEMKRWIKE-------YNVTNFDFYDLTAILKKDWLITMANLIIESGLNI 293

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
                  +    + + ++    +      ++    +SGS+ +LK + +       + ++ 
Sbjct: 294 TWQLPIGTRSEVIDEDVVGLLYESG--CRHMTYAPESGSEYMLKKIKK---KINKKAMLH 348

Query: 321 RIRSV-RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            IR+  +  +   +  +V FP E+      +      + +       +SP    PGS + 
Sbjct: 349 SIRAADKAGLKTKAHLLVAFPDESFKHVMQSYGFAIHLAFVGLHDLAFSPFSPYPGSELS 408

Query: 380 EQV 382
           E++
Sbjct: 409 ERL 411


>gi|188589895|ref|YP_001921976.1| radical SAM domain protein [Clostridium botulinum E3 str. Alaska
           E43]
 gi|188500176|gb|ACD53312.1| putative cobalamin-dependent enzyme [Clostridium botulinum E3 str.
           Alaska E43]
          Length = 554

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 81/220 (36%), Gaps = 14/220 (6%)

Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           L     GK   +    +    + +   +   +    +  +     GC   C +C+   + 
Sbjct: 138 LHYKLDGKVSSNEKRPLMSMDDLVFPYEENEDLNNKIVYYEA-SRGCPFNCKYCLSSTSH 196

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G     S+ +V+ E +  ID  V  +  + +  N      +   K            I+ 
Sbjct: 197 G-VRFLSIERVLKELQYFIDKKVRLVKFVDRTFNCNHKFSMAIWKFL----------IES 245

Query: 260 LVRLRYTTSHPRDM-SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
               ++      D+  +  IK             + VQ+ +D++L ++NR     + ++ 
Sbjct: 246 NTETKFHFEISADILKEEEIKLLSKAPKGRFQFEVGVQTTNDKVLNNINRFVNFEDIKEK 305

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           +D + +++ +I    D I G PGE  + F  + + V KI 
Sbjct: 306 VDELMAIK-NIQQHLDLIAGLPGENYESFVNSFNDVYKIR 344


>gi|171186431|ref|YP_001795350.1| radical SAM domain-containing protein [Thermoproteus neutrophilus
           V24Sta]
 gi|170935643|gb|ACB40904.1| Radical SAM domain protein [Thermoproteus neutrophilus V24Sta]
          Length = 565

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 67/379 (17%), Positives = 120/379 (31%), Gaps = 53/379 (13%)

Query: 124 VNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQ 183
           V++VV    Y  L E +ER    +         E       I     N  R +   L   
Sbjct: 137 VDLVV----YRLLKEGVERVWPSETHEGFGLVDEFARRGAKIAAQHPNYGRNLIVELETY 192

Query: 184 EGCDKF----CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQ-NVNAWRGK 238
             C +F    C+FC      G   +RS   +V E   L   GV    L  Q +   +   
Sbjct: 193 RSCPRFVSGGCSFCTT-VAYGPVATRSAEGIVREVEALYKAGVVHFRLGRQADFYTYMAH 251

Query: 239 GL---DGEKCTFSDLLYSLSEI----KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL 291
            +   D  +   S +   L+ +     GL  L     +P  ++    ++     +L  Y 
Sbjct: 252 DIGREDFPRPNPSAIERLLAGVRNAAPGLKTLHVDNVNPGTVARWKAESIEVTKLLAKYG 311

Query: 292 H------LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV--------RPDIAISSDFIV 337
                  + V++   R++K  N + +  E  + ++              P I    +F+ 
Sbjct: 312 TPGNVAAMGVETADPRVVKINNLKVSPEEALEAVELFTKYGSQRGYNGMPYILAGINFVA 371

Query: 338 GFPGETDDDFRATMDL----------VDKIGYAQAFSFKYS---PRLGTPGSNMLEQVDE 384
           G PGET + ++  ++           V ++   Q   F  S   P        + EQ   
Sbjct: 372 GLPGETAETYQRNIEFLSEILRRGLLVRRVNIRQVLIFPTSRLWPSAKKLARRLREQ--- 428

Query: 385 NVKAERLLCLQKKLREQQVSFNDACV---GQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
                R L  ++  RE         +   G ++  +  +     G    +      +   
Sbjct: 429 ---KRRFLLFKRWAREVFDREMLRRIVPRGTVLREVYTETHYHGGTYARQVGSYPLLTYL 485

Query: 442 SKNHNIGDIIKVRITDVKI 460
                +G  I V + D   
Sbjct: 486 PTRLQLGRYIDVVVVDHGS 504


>gi|57233930|ref|YP_181992.1| radical SAM/B12 binding domain-containing protein [Dehalococcoides
           ethenogenes 195]
 gi|57224378|gb|AAW39435.1| radical SAM/B12 binding domain protein [Dehalococcoides ethenogenes
           195]
          Length = 503

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 62/387 (16%), Positives = 134/387 (34%), Gaps = 43/387 (11%)

Query: 62  ADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRS 121
           AD + ++   +++K+A +    + R   L    +  G                 E     
Sbjct: 66  ADYVFISAMAVQQKSAHEC---IDRCHALGRKVVAGGPY------------FTAEAETLK 110

Query: 122 PIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAF-L 180
            I ++++G +    L + +     GK         +       I      + +  ++  L
Sbjct: 111 DIDHLILG-EVENSLADFVADLEAGKAAAVYPEKEKSDLADTPIPLWNLVKSKEYSSMSL 169

Query: 181 TIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
               GC   C FC +    G    S+S  QV+ E   L  +G         +        
Sbjct: 170 QYSRGCPFNCEFCDIVVLNGRLPRSKSRGQVLAELDALYKSGWRSGVFFVDD------NF 223

Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM----SDCLIKAHGDLDVLMPYLHLPV 295
           +  +    SD+L ++   +      ++ +    +       L+     ++     + + V
Sbjct: 224 IGNKNKLKSDILPAVIAWQKRKGYPFSFNTEVSINLADDVELLHLM--VEAGFDTVFVGV 281

Query: 296 QSGSDRILKSMNRR-HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           ++ +   L   ++  +T  +    I++I+     I +   FI+GF  +    FRA ++ +
Sbjct: 282 ETPNPESLAECSKHQNTNRDMLSSIEKIQQA--GIQVQGGFILGFDSDPASIFRAQINFI 339

Query: 355 DKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLC-LQKKLREQQVSFNDACVGQI 413
            + G   A     +   GT   N L+      K +RLL   +    +  ++F      + 
Sbjct: 340 QQSGIVTAMVGLLNAPRGTRLWNRLK------KEKRLLEDFRGDNTDCSLNFIPRM--KT 391

Query: 414 IEVLIEKHGKEKGKLVGRSPWLQSVVL 440
            EVLI  + +    +     + Q V +
Sbjct: 392 -EVLINGYNRVLSVIYAPREYYQRVAV 417


>gi|317131069|ref|YP_004090383.1| Radical SAM domain protein [Ethanoligenens harbinense YUAN-3]
 gi|315469048|gb|ADU25652.1| Radical SAM domain protein [Ethanoligenens harbinense YUAN-3]
          Length = 502

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 42/320 (13%), Positives = 100/320 (31%), Gaps = 33/320 (10%)

Query: 62  ADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRS 121
           ADL++++   ++  + ++    + R + L       G                       
Sbjct: 67  ADLVLISAMVVQRTSVKE---VIARCKRLGVKTAAGGPLFT-------------AEKDDY 110

Query: 122 PIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAF-L 180
             V+ ++  +    +P  L     G            +     +        +   +  +
Sbjct: 111 DDVDYLILGEGEITMPMFLADWEAGHAKHLYLPDRFPELSETPVPQWNLIHVKKYASMNI 170

Query: 181 TIQEGCDKFCTFCVVPYTRGI-EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
               GC   C FC +    G    +++  QVV E + L + G         +        
Sbjct: 171 QYSRGCPFDCEFCDITSLYGRTPRTKNAEQVVAEMQALYETGWSNGVFFVDD------NF 224

Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP----RDMSDCLIKAHGDLDVLMPYLHLPV 295
           +  +K    ++L +++E        +             + L+     +      + + +
Sbjct: 225 IGNKKKLKEEILPAITEWMDAHGRPFQFITETSINIVDDEQLMNDM--VRAGFHQVFIGI 282

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSV-RPDIAISSDFIVGFPGETDDDFRATMDLV 354
           ++  +  L   ++     + R ++  IR + R  + + + FIVGF  +T   F   +  +
Sbjct: 283 ETPDEASLAECHK--NQNKNRDLLACIRKIQRFGLEVQAGFIVGFDSDTSTIFDRMVKFI 340

Query: 355 DKIGYAQAFSFKYSPRLGTP 374
              G   A     +   GT 
Sbjct: 341 QASGITTAMVGLLNAPKGTK 360


>gi|253698732|ref|YP_003019921.1| radical SAM protein [Geobacter sp. M21]
 gi|251773582|gb|ACT16163.1| Radical SAM domain protein [Geobacter sp. M21]
          Length = 616

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 37/240 (15%), Positives = 76/240 (31%), Gaps = 18/240 (7%)

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
              G+        ++ +      + G  +      A   +  GCD  C FC      G  
Sbjct: 146 VLPGEAPGALPPPLDLEEIPSPYLSGQLDPTVAGGALWQLSRGCDFACAFCYDHKGNGGV 205

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
              +L ++  E        V ++ +L    N               ++L  + ++   V 
Sbjct: 206 RRFALKRIEAELILFARLQVPQVFVLDSTFNK--------MPQRAKEILRLIRKLAPGVH 257

Query: 263 LRYTTSHPRDMSDCLIKA-HGDL-DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
             +      ++    I A   +L   +   L + +QS    +L+ + R     ++     
Sbjct: 258 FHF------EVRSEFIDAEMAELFASITCSLQIGLQSADPAVLRGVGRGFDRDDFVMRAS 311

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
            +   R       D I G PG++   FR+++D    +       F  +   GT      +
Sbjct: 312 LL--NRTGAIFGFDLIYGLPGDSLKLFRSSLDFALSLYPNHLDIFPLAVLPGTRLHAKAD 369


>gi|51245668|ref|YP_065552.1| magnesium-protoporphyrin IX monomethyl ester oxidative cyclase
           [Desulfotalea psychrophila LSv54]
 gi|50876705|emb|CAG36545.1| related to magnesium-protoporphyrin IX monomethyl ester oxidative
           cyclase [Desulfotalea psychrophila LSv54]
          Length = 431

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 55/320 (17%), Positives = 116/320 (36%), Gaps = 43/320 (13%)

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEI-LRRSPIVNVVVGPQTYYRLPELLER----- 142
            L +        +L+ V G  A ++ E         + + +G Q++  L E LER     
Sbjct: 88  QLASQVRACDERILITVGGVHASSDPEFFNREMIDWIIIGLGVQSFPLLAEALERGLLVE 147

Query: 143 ------ARFGKRVV--DTDYSVEDKFERLSIVDGGYNRKRGVT--------AFLTIQEGC 186
                 ++ GK++V     +S +D        D  +  +             F++   GC
Sbjct: 148 IDGVARSQAGKKLVYRPRSFSQDDLLTISPRYDLVHEYRPSYILETLGLQLGFVSTAAGC 207

Query: 187 DKFCTFCVV-PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
              C+FC + P T G   +  +  V+ + +++       I L+  N          G+  
Sbjct: 208 PFDCSFCCIGPLTGGRYFTAKIENVIRDIQRVP---TPVIRLVDANTF--------GKPK 256

Query: 246 TFSDLLYSLSEIKGLVRLRYTT--SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
              +L  ++    G+ +       S    +   L++   ++   +  + +  +   D  L
Sbjct: 257 HAEELARAIGH-YGIKKQFIADVRSDTVVLHPQLMRQWREIG--LRAVIIGFEEIDDSAL 313

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
            +MN++++A   +  I+ +  +   I I  DFI+  P   ++ F      V         
Sbjct: 314 GAMNKKNSAATNKHAIEILHDL--GITIVGDFIIS-PDYREEQFERLDAFVQAQAIELPM 370

Query: 364 SFKYSPRLGTPGSN-MLEQV 382
               +P  GT     + +Q+
Sbjct: 371 YTVLTPLPGTALHREVRDQI 390


>gi|125975664|ref|YP_001039574.1| radical SAM family protein [Clostridium thermocellum ATCC 27405]
 gi|256003601|ref|ZP_05428590.1| Radical SAM domain protein [Clostridium thermocellum DSM 2360]
 gi|281416671|ref|ZP_06247691.1| Radical SAM domain protein [Clostridium thermocellum JW20]
 gi|125715889|gb|ABN54381.1| Radical SAM [Clostridium thermocellum ATCC 27405]
 gi|255992392|gb|EEU02485.1| Radical SAM domain protein [Clostridium thermocellum DSM 2360]
 gi|281408073|gb|EFB38331.1| Radical SAM domain protein [Clostridium thermocellum JW20]
 gi|316939779|gb|ADU73813.1| Radical SAM domain protein [Clostridium thermocellum DSM 1313]
          Length = 583

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 43/330 (13%), Positives = 109/330 (33%), Gaps = 48/330 (14%)

Query: 41  SLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGD 100
           S  +    +++G +              +C+I           +G +  L  +      D
Sbjct: 44  SEYVLSRIYAEGCDVAAF----------SCYIWN---------IGFVLKLAENLKMVLPD 84

Query: 101 LLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ-------------TYYRLPELLERA---R 144
           + +++ G     +  +ILR +  V+ V+  +                  P+ +E     +
Sbjct: 85  VKIILGGPEVSFDPHDILRSNRFVDYVMAGEGEGAFGLLLRSFTDEGINPDAIEGLSYRK 144

Query: 145 FGKRVVDTDYSVEDKFERLSIV--DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            G+    T + +  + + +                 +     GC   C++C+     G  
Sbjct: 145 NGEIHASTSFRLVKELDTVPSPYTPEMLEAIGNRIIYFESSRGCPFSCSYCISSTFEG-V 203

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
              S+ +V  +   LID  V  +  + +  N          +    ++   + E      
Sbjct: 204 RYFSMDRVKSDLLTLIDARVKLVKFVDRTFNC--------NRQRAKEIFSFIIENAKETS 255

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
             +  +      D +          +    + +QS ++  L+++ R+    +  + I ++
Sbjct: 256 FHFEAAADL-FDDEMFDILSRAPKGLIQFEIGIQSTNEAALEAIRRKTDLKKVFENIKKL 314

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMD 352
           + +  ++ I  D I G P E  + F  + +
Sbjct: 315 KEL-GNVHIHVDLIAGLPFEDYNSFLNSFN 343


>gi|157364103|ref|YP_001470870.1| coproporphyrinogen dehydrogenase [Thermotoga lettingae TMO]
 gi|157314707|gb|ABV33806.1| Coproporphyrinogen dehydrogenase [Thermotoga lettingae TMO]
          Length = 409

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 41/227 (18%), Positives = 77/227 (33%), Gaps = 15/227 (6%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C K CTFC +                    K I        +     +A    G      
Sbjct: 49  CLKTCTFCSM----NRSQVAPPEDYHRLILKEIQMYSKFSYIEKSTFDAVYFGGGTPTTL 104

Query: 246 TFSDLLYSLSEIKGLVRL-----RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300
               L   +  +K    L         +   ++SD  I+        +    + VQ+ SD
Sbjct: 105 RSDALREIIVAVKDNFNLTPDAEITIETSVTELSDDKIELFKQTG--VNRFSIGVQTFSD 162

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
              K  NRR      ++ +  ++      +++ D I  +PG++ ++ R  +  + ++   
Sbjct: 163 MGRKIFNRRGLGEWVKERLKFLKR-MNFASVNIDIIYSYPGQSLEELRKDLRTIYELDLD 221

Query: 361 QAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFND 407
                 YS  +  P S + E+V E    E  +C+ K  R+    F +
Sbjct: 222 --GFSMYS-LMNMPASKIKEEVSEETDLENFMCILKMSRDNGYDFLE 265


>gi|256828951|ref|YP_003157679.1| Radical SAM domain-containing protein [Desulfomicrobium baculatum
           DSM 4028]
 gi|256578127|gb|ACU89263.1| Radical SAM domain protein [Desulfomicrobium baculatum DSM 4028]
          Length = 502

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 47/328 (14%), Positives = 110/328 (33%), Gaps = 25/328 (7%)

Query: 57  NSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEE 116
           + ++ AD   ++   I+ ++ +++ S   RI             +  V  G +  +  ++
Sbjct: 61  DDLEWADYAFISAMTIQRESVQEILSRCRRI------------GIKTVAGGPLFTSAPDD 108

Query: 117 ILRRSPIVN-VVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRG 175
                P V+ +V+G         L +      R +  +    +       +    + K  
Sbjct: 109 F----PDVDHLVLGEAEVTLAAFLQDLQTDSARHLYVNEQHANLSTTPLPLWELIDVKNY 164

Query: 176 VTAFLTIQEGCDKFCTFCVVPYTRGI-EISRSLSQVVDEARKLIDNGVCEITLLGQNVNA 234
            +  +    GC   C FC +    G    S+  SQ++ E  +L   G      +  +   
Sbjct: 165 ASMNIQYSRGCPFDCEFCDITALFGRISRSKDTSQLLAELERLRVQGWRGAVFVVDD--N 222

Query: 235 WRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP 294
           + G     ++     L+  + E           S        L++    +      + + 
Sbjct: 223 FIGDRAKLKQILLPALIEWMEEHAYPFYFYTEASINLADDGHLMELM--VKAGFKEVFIG 280

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSV-RPDIAISSDFIVGFPGETDDDFRATMDL 353
           +++ ++  L    +      +R ++D +  +    + +   FIVGF  +    F   +  
Sbjct: 281 IETPNEESLVESGKVQNR--HRDLLDSVHRIQLAGLQVQGGFIVGFDSDPPSIFEMQISF 338

Query: 354 VDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +++ G   A     +   GT     L Q
Sbjct: 339 IEESGIVTAMVGLLTALRGTRLYQRLNQ 366


>gi|302545465|ref|ZP_07297807.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Streptomyces hygroscopicus ATCC 53653]
 gi|302463083|gb|EFL26176.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Streptomyces himastatinicus ATCC 53653]
          Length = 413

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 42/244 (17%), Positives = 87/244 (35%), Gaps = 31/244 (12%)

Query: 186 CDKFCTFCVV--------PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG 237
           C   C +C            + G   SR      + A ++ +       +LG +      
Sbjct: 42  CATRCGYCDFNTYTAAELRGSGGALASRD-----NYAEQVAEEVRLARKVLGDDPRPVET 96

Query: 238 KGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDC---------LIKAHGDLDVLM 288
             + G   T       L  + G +R  +  +   +++            ++   +     
Sbjct: 97  VFVGGGTPTL-LAAADLGRMLGAIRDEFGLADGAEITTEANPESVDPRYLEELREAG--F 153

Query: 289 PYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFR 348
             +   +QS    +LK ++R HT       +   R+   D  ++ D I G PGE+DDD+R
Sbjct: 154 NRMSFGMQSARQHVLKVLDRTHTPGRPEACVAEARAAGFD-HVNLDLIYGTPGESDDDWR 212

Query: 349 ATMDLVDKIGYAQAFSFKYSPRLGTPGSN--MLEQVD---ENVKAERLLCLQKKLREQQV 403
           A+++     G     ++      GT  +      +V    ++  A+R L  ++ L     
Sbjct: 213 ASLEAALGAGPDHVSAYALIVEEGTQLARRIRRGEVPMTDDDAHADRYLIAEEMLSAAGF 272

Query: 404 SFND 407
           ++ +
Sbjct: 273 AWYE 276


>gi|182415369|ref|YP_001820435.1| radical SAM domain-containing protein [Opitutus terrae PB90-1]
 gi|177842583|gb|ACB76835.1| Radical SAM domain protein [Opitutus terrae PB90-1]
          Length = 490

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 51/325 (15%), Positives = 102/325 (31%), Gaps = 42/325 (12%)

Query: 61  DADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRR 120
           +AD +++    +     E V+  + R   L    I  G                     +
Sbjct: 65  EADYVLIGAMLVH---QESVHEIVARCAALGKRVIGGGPLFTTG-------------HEK 108

Query: 121 SPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFL 180
            P +   V  +    +P+L+     G               +  +        R      
Sbjct: 109 FPEIAHFVLGEAEEIMPQLVADLVSGDLQPSYQAPRFPTITQTPVPRWDLINVRHYVTMA 168

Query: 181 -TIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK 238
                GC   C FC +    G    +++ +Q V+E   L  +G  ++  +  +       
Sbjct: 169 AQFSRGCPFDCEFCDIIVMNGRVPRTKTPAQFVEELEVLRRHGWRDMVFVVDD------- 221

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLM--------PY 290
              G+K     LL +L  I+   R         + S  L     D   L           
Sbjct: 222 NFIGDKRRTRALLEAL--IEWRRRTNPKMGFFTEASVNL----ADDPELCALMVAAGFTK 275

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP-DIAISSDFIVGFPGETDDDFRA 349
           + + +++ S   L+  ++       R ++  + +++   + +   FIVGF  +  D F+ 
Sbjct: 276 VFVGIETPSADALEECHKVQNR--NRDLVSAVHTLQHAGLEVMGGFIVGFDSDLSDIFKR 333

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTP 374
             D + + G A A     +    T 
Sbjct: 334 QFDFIQRSGVAIAMVGLLTALPRTK 358


>gi|299133446|ref|ZP_07026640.1| Radical SAM domain protein [Afipia sp. 1NLS2]
 gi|298591282|gb|EFI51483.1| Radical SAM domain protein [Afipia sp. 1NLS2]
          Length = 529

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 48/334 (14%), Positives = 104/334 (31%), Gaps = 48/334 (14%)

Query: 57  NSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEE 116
              + A+ + ++  HI      K  + + R  +  +     GG  +              
Sbjct: 71  EDFEWAEAVFVSGMHI----QRKQINDICRRAHEHDLPTALGGPSVSACP---------- 116

Query: 117 ILRRSPIVNVVVGPQTYYRLPELLER-----ARFGKRVVDTDYSVEDKFERLSIVDGGYN 171
                P  + +   +      +L  R      R  ++V+   +      E          
Sbjct: 117 --DYYPEFDYLHIGEMGDATDDLFARLSADPTRPKRQVMLETHERLAMTEFPLPAYELIP 174

Query: 172 RKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVCEIT-LLG 229
            ++     +    GC   C FC +P   G     +S  QV+ E  K+++NG+      + 
Sbjct: 175 LRKYFLGSIQFSSGCPYQCEFCDIPGLYGRNPRLKSPQQVIAELDKMVENGLSGAVYFVD 234

Query: 230 QNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMP 289
            N          G +    +LL  L E +   R  Y      + +            ++ 
Sbjct: 235 DNFI--------GNRRAVLELLPHLVEWQK--RNGYAVQFACEATLN----IAKRPEILQ 280

Query: 290 YLH--------LPVQSGSDRILKSMNRRHTAY-EYRQIIDRIRSVRPDIAISSDFIVGFP 340
            +H          +++     LK+M++ H       + +  + S    + + S  I+G  
Sbjct: 281 LMHDAFFLTVFCGIETPDPNALKAMSKEHNMMVPILEGVQTLNSY--GLEVVSGIILGLD 338

Query: 341 GETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
            +T++     +D +++                TP
Sbjct: 339 TDTEESGEGILDFIEQSQIPLLTINLLQALPKTP 372


>gi|301310639|ref|ZP_07216578.1| radical SAM domain protein [Bacteroides sp. 20_3]
 gi|300832213|gb|EFK62844.1| radical SAM domain protein [Bacteroides sp. 20_3]
          Length = 616

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 52/326 (15%), Positives = 106/326 (32%), Gaps = 60/326 (18%)

Query: 111 QAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGY 170
           +   ++ L+++     +      Y    +L++      VV+  +    + E  +  D  Y
Sbjct: 224 EECLKDKLKQAKNFRHIEEESNKYNASRILQKVGKQVIVVNPPFPPMTEAEIDASYDLPY 283

Query: 171 NRKRGVTA-------------FLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEAR- 215
            R                    + I  GC   C FC +   +G  I SRS   ++ E + 
Sbjct: 284 TRLPHPKYKGKVIPAFEMIKFSVNIHRGCFGGCAFCTISAHQGKFIASRSKESILKEVKA 343

Query: 216 --KLIDNGVCEITLLGQNVNAWRGKGLDGEKCT----------------------FSDLL 251
             ++ D       L G + N +R KG D   C                         D+ 
Sbjct: 344 ITEMPDFKGYLSDLGGPSANMYRMKGKDERICAKCKKPSCISPVVCKNLNADHTPLLDIY 403

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLD---------------VLMPYLHLPVQ 296
            ++  + G+ +    +    D+   L+  + D                  +   L +  +
Sbjct: 404 KAVDRLPGIKKSFIGSGVRYDL---LLHRYADESLNKAAQTYTEELIALHVSGRLKVAPE 460

Query: 297 SGSDRILKSMNRRHTAYE--YRQIIDRI-RSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
              D +LK M +   +    +++I D++ R    +  +   FI   PG T+ D      +
Sbjct: 461 HTQDEVLKQMRKPSFSQFGQFKKIFDKVNRQYGLNQQLIPYFISSHPGCTEADMAELAVI 520

Query: 354 VDKIGYAQAFSFKYSPRLGTPGSNML 379
              + +       ++P   T  + M 
Sbjct: 521 TKSLHFQLEQVQDFTPTPMTLATEMY 546


>gi|303249362|ref|ZP_07335590.1| Radical SAM domain protein [Desulfovibrio fructosovorans JJ]
 gi|302489237|gb|EFL49199.1| Radical SAM domain protein [Desulfovibrio fructosovorans JJ]
          Length = 1021

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 60/359 (16%), Positives = 117/359 (32%), Gaps = 52/359 (14%)

Query: 72  IREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPI-------- 123
           + E A+       G I ++K    +E     ++VAG +    GE++L   P+        
Sbjct: 101 VIESASPSWEHDAGLITHIK----RENPRTKIIVAGPITCL-GEKLLAEHPLHAAIRGEY 155

Query: 124 ----VNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAF 179
               V VV G  +     +LL      + +        D+       D     +      
Sbjct: 156 EKGLVKVVSGGVSGLLPFDLLRE----EELNAAPTPYFDELHAHRYWDSNPKGQLFPQLQ 211

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK- 238
           +    GC   C FCV P              V   R+L  + V  I     ++    G  
Sbjct: 212 MLTSRGCPFKCIFCVWPAVMSN--DDPDGTGVRLVRQLSADAVEGIL---TDLVGRYGYK 266

Query: 239 ---GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD-MSDCLIKAHGDLDVLMPYLHLP 294
                D         + ++  +   + L ++     D +S        +       + + 
Sbjct: 267 CVYFDDDTFNLGDRHVRAICGVMKRIGLPWSAMCRADTISRETWGLMRESG--CFGVKIG 324

Query: 295 VQSGSDRILK-SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
            +SG+  ++   + ++    + R ++  I+S+   + +   F VG PGET +    T   
Sbjct: 325 FESGNQWVIDNIVRKKLDLEKARDVVCHIKSL--GMTVHGTFTVGLPGETSEQMADTERY 382

Query: 354 VDKIGYAQAFSFKYSPRLGTP--------------GSNMLEQVDEN--VKAERLLCLQK 396
              +          +   G+P              G+++   V EN   +  RL+ L+ 
Sbjct: 383 RKSLPLDTYQESGTAEIEGSPLSSLRKSGSLEKYAGASLDGYVGENDGTRKMRLVALRD 441


>gi|197119829|ref|YP_002140256.1| radical SAM domain iron-sulfur cluster-binding oxidoreductase
           [Geobacter bemidjiensis Bem]
 gi|197089189|gb|ACH40460.1| radical SAM domain iron-sulfur cluster-binding oxidoreductase
           [Geobacter bemidjiensis Bem]
          Length = 506

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 70/412 (16%), Positives = 140/412 (33%), Gaps = 60/412 (14%)

Query: 43  RMEDMFFSQGYERVNSMD-----------DADLIVLNTCHIREKAAEKVYSFLGRIRNLK 91
            +     + GYE V+  D           +A +   N   +   A     + +G    L 
Sbjct: 31  YVAGSLRAAGYE-VDYYDAMSLWHKWPEIEARIRAFNPDVV---ATTSFTASIGHALELT 86

Query: 92  NSRIKEGGDLLVVVAGCVAQAEGEEILR-RSPIVNVVVGPQTYYRLPELLERARFG---- 146
               +   D++ V     A    +E+L+     V+ +V  +    L +LL+    G    
Sbjct: 87  ALAKEINPDVVTVHGNVHATFCYDEMLKAEHDTVDFIVRGEGEVTLVKLLDCLNQGGDPA 146

Query: 147 -----------------KRVVDTDYSVEDKFERLSIVDGGYNRKRGV--TAFLTIQEGCD 187
                            K     D         L        R +     A ++   GC 
Sbjct: 147 CVPGLSFWRDGAVVTTPKAASIQDLDALPMAWDLVEWPIYTYRAKNNARLAIVSSSRGCM 206

Query: 188 KFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT 246
           + C+FC           +RS    V E   L D+   E+ +L   +  +       ++  
Sbjct: 207 EKCSFCSQQLFWERSWRARSAENFVAELELLRDSYGVEVAMLSDEIPTF-------DRER 259

Query: 247 FSDLLYSLSEIK-GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
           +  +L  + E K G+  L  T          ++  + +    + ++++ V++G    L  
Sbjct: 260 WVRILDLMIERKVGVKLLMETRVDDILRDADIMDKYREAG--VEHIYVGVEAGDQATLDL 317

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
            N+     + +  ID I +   DI   + F++G P +T +   AT++L        AF  
Sbjct: 318 FNKNTKVEQSKAAIDIINNA--DIVSETSFVLGMPDDTPESIAATIELAKHYNPDMAFFL 375

Query: 366 KYSPRLGTPGSNMLEQVDENV--KAERLLCLQKKL---REQQVSFNDACVGQ 412
             +P      + +  +++  V  K  R   L + +   +   V   +  +G+
Sbjct: 376 AIAPWPY---AELYPELEPYVATKDYRKYNLVEPVIKPKAMTVEELERELGR 424


>gi|295401270|ref|ZP_06811242.1| cobalamin B12-binding domain protein [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|312111908|ref|YP_003990224.1| cobalamin B12-binding domain protein [Geobacillus sp. Y4.1MC1]
 gi|294976677|gb|EFG52283.1| cobalamin B12-binding domain protein [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|311217009|gb|ADP75613.1| cobalamin B12-binding domain protein [Geobacillus sp. Y4.1MC1]
          Length = 590

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 57/372 (15%), Positives = 119/372 (31%), Gaps = 50/372 (13%)

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVV--------------- 128
           +     +     K   D+ +V  G     +  E +   P ++ +V               
Sbjct: 67  IEESLKVIKMLKKIAPDITIVAGGPEVSYDVREWMETIPELDFIVIGEGEETFKQLLIEF 126

Query: 129 -GPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGY--NRKRGVTAFLTIQEG 185
            G + ++ +  L  R   G+ +++   +     +  S                ++    G
Sbjct: 127 YGNKNFHHIHGLAFR-EDGEIIINPQRNKIRLADMPSPFRFPEDIPHLPKRITYIETSRG 185

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C   C FC+     G        ++ ++ R L+ +G   I  + +  N  R   +D  + 
Sbjct: 186 CPFSCQFCLSSIEVG-VRYFDREKIKEDIRYLMKHGARTIKFVDRTFNISRSYAMDMFQF 244

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAH-GDLDVLMPYLHLPVQSGSDRILK 304
              +       + G V     T+    M   +I+    +    +    + VQS +D + +
Sbjct: 245 LIDEH------VPGTVFQFEITADI--MRPEVIEFLNKEAPPGLFRFEIGVQSTNDEVNR 296

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
            + R+    +  + +  ++     IA   D I G P E    FR T + V  +   +   
Sbjct: 297 LVMRKQNFEKLTRTVMMVKEG-GKIAQHLDLIAGLPEEDYTSFRKTFNDVFALRPEELQL 355

Query: 365 FKYSPRLGT--------PGSNMLEQVDENVKAE---------RLLCLQKKLREQQVSFND 407
                  GT         G   ++     V            RL  ++  L +    +N 
Sbjct: 356 GFLKMLRGTGLRLRAKDYGYVFMDHAPYEVLQNNALSFDDIIRLKQVEDVLEKY---WNA 412

Query: 408 ACVGQIIEVLIE 419
             + + IE L+ 
Sbjct: 413 HRMDETIEYLVT 424


>gi|170289794|ref|YP_001736610.1| magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase
           [Candidatus Korarchaeum cryptofilum OPF8]
 gi|170173874|gb|ACB06927.1| Magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase
           [Candidatus Korarchaeum cryptofilum OPF8]
          Length = 483

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 54/309 (17%), Positives = 106/309 (34%), Gaps = 40/309 (12%)

Query: 92  NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVV---GPQTYYRLPELLER-----A 143
            +  +   + +V++ G          LR  P ++ VV   G +T+    + LER     +
Sbjct: 85  RAAKEINENSIVMIGGPHVTFLPIYTLRSCPQIDAVVRGEGEETFRESLKALEREFSVDS 144

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTI-----------------QEGC 186
             G R +    S  +  E              + A+  I                   GC
Sbjct: 145 LKGIRGITYRSSSGEIKENQQRPLIRDLDSLPIPAYDLIDWDLYRVGKLRYGVIMSSRGC 204

Query: 187 DKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEK 244
              C FC      G    + S+ +VV+E R L ++ G+ EI  L               +
Sbjct: 205 PFNCIFCSSSLQFGSIWRAHSVRRVVEELRLLREDFGIREIEFLDDTFT--------LNR 256

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304
               ++   +   +G+      +S    +      +          ++L ++SG+ R+L 
Sbjct: 257 KRAREICDEIVR-EGIDLSWSASSRVNTLDRETADSMRRAG--AHTVYLGIESGTQRVLD 313

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
            + +  T  +    +    +++  +     F++GFP E  +D   T+     +G   A  
Sbjct: 314 FIGKGITVTQAVDAVKT--ALKSGLQALGSFVIGFPIERKEDIERTIGFAKSLGLKYAQF 371

Query: 365 FKYSPRLGT 373
              +P  GT
Sbjct: 372 TVATPYPGT 380


>gi|225174473|ref|ZP_03728472.1| Radical SAM domain protein [Dethiobacter alkaliphilus AHT 1]
 gi|225170258|gb|EEG79053.1| Radical SAM domain protein [Dethiobacter alkaliphilus AHT 1]
          Length = 291

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 82/224 (36%), Gaps = 17/224 (7%)

Query: 166 VDGGYNRKRGVTAFLTIQ--EGCDK-FCTFCVVPYTRGIEISRSLSQV---VDEARKLID 219
            +G   R       L IQ   GC    CTFC + Y +     RS+ ++   +  AR    
Sbjct: 3   YEGMVYRPPSEAGSLIIQATVGCPHNRCTFCSM-YRQSRFRLRSVDEIKEDLAMARDYYG 61

Query: 220 NGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIK 279
           + V  I L   N    +   L         L  ++  I      R+ T         L +
Sbjct: 62  DSVRTIFLADGNTIVMKTDHLVEILRCIRQLFPAVERITSYGSARFITKKKPADWVALRE 121

Query: 280 AHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGF 339
           A       +  +H  ++SG D +L+  N+   A    +    I+     I +S   IVG 
Sbjct: 122 A------GLSRIHSGMESGDDEVLRLQNKGVDAQGIVRAGQMIKDA--GIELSEYIIVGA 173

Query: 340 PGET--DDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
            G+T  +   + +  ++++I           P  GTP  +M ++
Sbjct: 174 GGKTLSEQHAQNSARVLNRINPDFIRLRTLMPAQGTPLYDMFKK 217


>gi|159027375|emb|CAO90562.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 520

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 51/332 (15%), Positives = 112/332 (33%), Gaps = 36/332 (10%)

Query: 58  SMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEI 117
             D A++++L+   +      +    + +I   K          LV V G    +   E+
Sbjct: 62  EWDWAEIVILSGMIV------QRQDLIEQIHEAKQRGK------LVAVGGPYPTSIPHEV 109

Query: 118 LRRSPIVNVVVGPQTYYRLPELLERARFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRG 175
                  + ++  +    +P  +E    G+   V  T    +     +   D   + +  
Sbjct: 110 A----EADFLILDEGEITIPMFVEALAKGETKGVFRTTEKPDVTITPIPRYDL-LDFEAY 164

Query: 176 VTAFLTIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVCEITLLGQNVNA 234
            +  +    GC   C FC +    G +  +++ +Q++ E   L + G      +  +   
Sbjct: 165 DSMSVQFSRGCPFQCEFCDIIVLYGRKPRTKAPAQLLKELDYLYELGWRRGVFMVDD--- 221

Query: 235 WRGKGLDGEKCTFSDLLYSL----SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY 290
                  G K     LL  L     E +   R     S        L++    +D     
Sbjct: 222 ----NFIGNKRNVKLLLKELKVWQEEHQYPFRFNTEASVDLAADPELMEMM--VDCYFDA 275

Query: 291 LHLPVQSGSDRILKSMNRR-HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           + L +++  +  L+   +  +T     + +++I  ++  +   + FI+GF GE       
Sbjct: 276 VFLGIETPDEESLQLTKKFQNTRSSLTETVEKI--IKAGLRPMAGFIIGFDGEKKGAADR 333

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
            ++ V++     A          T     LE+
Sbjct: 334 IINFVEEAAIPTALFGMLQALPNTALWTRLEK 365


>gi|297194439|ref|ZP_06911837.1| coproporphyrinogen III oxidase [Streptomyces pristinaespiralis ATCC
           25486]
 gi|197718752|gb|EDY62660.1| coproporphyrinogen III oxidase [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 413

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 53/273 (19%), Positives = 93/273 (34%), Gaps = 28/273 (10%)

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV-PYTRGIEI- 203
           G   V  D     +   L          R +  +L +   C   C +C    YT      
Sbjct: 3   GMPSVLPDGEPMPEDGALPASALHGAEARPLAFYLHVPY-CATRCGYCDFNTYTATELRG 61

Query: 204 ------SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257
                 SR      + A+ L D       +LG +    R   + G   T       L  +
Sbjct: 62  SGGVLASRD-----NYAQTLADEVRLARKVLGDDPRPVRTVFVGGGTPTL-LAAGDLVRM 115

Query: 258 KGLVRLRYTTSHPRDMSDC-------LIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
             +VR  +  +   +++                 +     +   +QS    +LK ++R H
Sbjct: 116 LDVVRQEFGLADDAEITTEANPESVDPAYLAALREGGFNRVSFGMQSARQHVLKVLDRTH 175

Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370
           T       +   R+   D  ++ D I G PGE+DDD+RA+++     G     ++     
Sbjct: 176 TPGRPEACVAEARAAGFD-HVNLDLIYGTPGESDDDWRASLEAAVGAGPDHVSAYALIVE 234

Query: 371 LGTPGSN--MLEQVD---ENVKAERLLCLQKKL 398
            GT  +      +V    ++V A+R L   + L
Sbjct: 235 EGTQLARRIRRGEVPMTDDDVHADRYLIADEVL 267


>gi|188588627|ref|YP_001920250.1| coproporphyrinogen III oxidase [Clostridium botulinum E3 str.
           Alaska E43]
 gi|188498908|gb|ACD52044.1| oxygen-independent coproporphyrinogen III oxidase [Clostridium
           botulinum E3 str. Alaska E43]
          Length = 379

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 86/224 (38%), Gaps = 18/224 (8%)

Query: 186 CDKFCTFCVVPYTRGIEI--SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
           C + C +C  P   G E   S  +  +  E +    +   +   +G       G     +
Sbjct: 18  CKQKCLYCDFPSYSGKEKFISGYIGALNKEIKDKASSYKIKSIFIG------GGTPSYLD 71

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTT-SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
           +     LL  ++ +     L +T   +P  +S+  +K     +  +  + + +QS    +
Sbjct: 72  EIELEKLLKCINTLMLGENLEFTIECNPGSLSEDKLKIMKKYN--VNRISMGLQSTKPSL 129

Query: 303 LKSMNRRHTAYEYRQIIDRIRSV-RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
           LK + R HT  E+       R V   +I I  D + G P ++ +D+R T++ + +     
Sbjct: 130 LKEIGRIHTFEEFENNYLLARKVGFKNINI--DLMFGLPNQSVEDWRKTLEKIIEFNPEH 187

Query: 362 AFSFKYSPRLGTPGSNMLEQ----VDENVKAERLLCLQKKLREQ 401
             ++      GT   N+  Q    +    K   +  L KK  ++
Sbjct: 188 ISAYSLIIEEGTCFYNLYNQDKLNLPSEEKERDMYLLTKKFLKE 231


>gi|34540690|ref|NP_905169.1| hypothetical protein PG0934 [Porphyromonas gingivalis W83]
 gi|47606254|sp|Q7MVU9|Y934_PORGI RecName: Full=UPF0313 protein PG_0934
 gi|34397004|gb|AAQ66068.1| radical SAM domain protein [Porphyromonas gingivalis W83]
          Length = 634

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 52/303 (17%), Positives = 101/303 (33%), Gaps = 56/303 (18%)

Query: 132 TYYRLPELLERARFGKRVVDTDYSVE-----DKFERLSIVDGGYNRKRG--------VTA 178
             Y    +L+       VV+  +        D+   L      + R +G        +  
Sbjct: 249 NRYEADRILQAVGDSTIVVNPPFPPMSTAQIDQSFDLPYTRLPHPRYKGKIISAYEMIKH 308

Query: 179 FLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDNGVCEITLL---GQNVNA 234
            + +  GC   C FC +   +G  I SRS + V+ E +++ +    +  L    G + N 
Sbjct: 309 SVNVHRGCFGGCAFCTISAHQGKFIASRSEASVLREVKEITEMEDFKGYLSDVGGPSANM 368

Query: 235 WRGKGLDGEKC-------------------TFSDLLYSLSEIKGLVRLRYTTSHPRDMSD 275
           ++ +G D   C                       LL  L  I    +++ +        D
Sbjct: 369 YKMQGYDLSICKRCKKPSCIHPNVCPNLNADHRPLLDLLRRIDKNPKIKKSFIGSGVRMD 428

Query: 276 CLIKAHGD-----------LDVLMPYLH----LPVQSGSDRILKSMNRRHTAYE--YRQI 318
            L+  + D            D+++ ++     +  +  SDR+L  M +        + + 
Sbjct: 429 LLLHNYKDKVLKKAADEYTEDLIVKHVSGRLKVAPEHSSDRVLNLMRKPPFRQFAEFTKR 488

Query: 319 IDRIRSVRPDIA--ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
             RI      +   +   FI   PG T++D      L  K+ +       ++P   T  +
Sbjct: 489 FQRINEA-HGLRQQLIPYFISSHPGCTEEDMAELAILTKKLDFKLEQIQDFTPTPMTLAT 547

Query: 377 NML 379
            M 
Sbjct: 548 EMY 550


>gi|298251431|ref|ZP_06975234.1| Radical SAM domain protein [Ktedonobacter racemifer DSM 44963]
 gi|297546023|gb|EFH79891.1| Radical SAM domain protein [Ktedonobacter racemifer DSM 44963]
          Length = 469

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 50/326 (15%), Positives = 101/326 (30%), Gaps = 43/326 (13%)

Query: 92  NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVD 151
               +      + + G  A    + +L+ +  ++  +G +    L  L++    G+    
Sbjct: 81  RRVRQVNPGAFICLYGLYALLNADHLLQGT--IDAAIGGEYEEPLLRLVQAREQGQDTAI 138

Query: 152 TDYSVEDKFERLSIVDGGY--NRKRGVTA-----------------FLTIQEGCDKFCTF 192
                 +      I    +   ++R + A                 +     GC   C  
Sbjct: 139 PGVRTREHASGAWIARTPFLVPQRRQLPALDRYARLQWGDDLRIVGYTESTRGCKHTCLH 198

Query: 193 C-VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLL 251
           C V P  +G   +     V+ + R  ++ G   IT    +         +G         
Sbjct: 199 CPVTPVYQGRFFAVPQQIVLADIRAQVEQGARHITFGDPD-------FWNGPTHALRIAR 251

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
              +E   +                L+    +L     ++   V+S +D  L  +++ HT
Sbjct: 252 ALHAEFPEVTFDATVKIEHLLKHASLLPEMRELG--CVFIVSAVESLNDTALLRLDKGHT 309

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG-YAQAFSFKYSPR 370
           A + R+     R     I +    +   P ET + +   +D  ++            S R
Sbjct: 310 AADVRRAFALTREA--GIVLRPSLLPFSPWETLESYIELLDFFEQQHAIEHLDPVHLSIR 367

Query: 371 ---LGTPGSNMLEQVDENVKAERLLC 393
                 PGS +L Q     K++R L 
Sbjct: 368 LLVP--PGSALLAQ----EKSQRWLR 387


>gi|197117553|ref|YP_002137980.1| radical SAM domain iron-sulfur cluster-binding oxidoreductase
           [Geobacter bemidjiensis Bem]
 gi|197086913|gb|ACH38184.1| radical SAM domain iron-sulfur cluster-binding oxidoreductase
           [Geobacter bemidjiensis Bem]
          Length = 506

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 70/412 (16%), Positives = 140/412 (33%), Gaps = 60/412 (14%)

Query: 43  RMEDMFFSQGYERVNSMD-----------DADLIVLNTCHIREKAAEKVYSFLGRIRNLK 91
            +     + GYE V+  D           +A +   N   +   A     + +G    L 
Sbjct: 31  YVAGSLRAAGYE-VDYYDAMSLWHKWPEIEARIRAFNPDVV---ATTSFTASIGHALELT 86

Query: 92  NSRIKEGGDLLVVVAGCVAQAEGEEILR-RSPIVNVVVGPQTYYRLPELLERARFG---- 146
               +   D++ V     A    +E+L+     V+ +V  +    L +LL+    G    
Sbjct: 87  ALAKEINPDVVTVHGNVHATFCYDEMLKADHDTVDFIVRGEGEVTLVKLLDCLNQGGDPA 146

Query: 147 -----------------KRVVDTDYSVEDKFERLSIVDGGYNRKRGV--TAFLTIQEGCD 187
                            K     D         L        R +     A ++   GC 
Sbjct: 147 SVPGLSFWRDGAVVTTPKAASIQDLDALPMAWDLVEWPIYTYRAKNNARLAIVSSSRGCM 206

Query: 188 KFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT 246
           + C+FC           +RS    V E   L D+   E+ +L   +  +       ++  
Sbjct: 207 EKCSFCSQQLFWERSWRARSAENFVAELELLRDSYGVEVAMLSDEIPTF-------DRER 259

Query: 247 FSDLLYSLSEIK-GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
           +  +L  + E K G+  L  T          ++  + +    + ++++ V++G    L  
Sbjct: 260 WVRILDLMIERKVGVKLLMETRVDDILRDADIMDKYREAG--VEHIYVGVEAGDQATLDL 317

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
            N+     + +  ID I +   DI   + F++G P +T +   AT++L        AF  
Sbjct: 318 FNKNTKVEQSKAAIDIINNA--DIVSETSFVLGMPDDTPESIAATIELAKHYNPDMAFFL 375

Query: 366 KYSPRLGTPGSNMLEQVDENV--KAERLLCLQKKL---REQQVSFNDACVGQ 412
             +P      + +  +++  V  K  R   L + +   +   V   +  +G+
Sbjct: 376 AIAPWPY---AELYPELEPYVATKDYRKYNLVEPVIKPKAMTVEELERELGR 424


>gi|320107803|ref|YP_004183393.1| Radical SAM domain-containing protein [Terriglobus saanensis
           SP1PR4]
 gi|319926324|gb|ADV83399.1| Radical SAM domain protein [Terriglobus saanensis SP1PR4]
          Length = 497

 Score = 67.7 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 41/195 (21%), Positives = 70/195 (35%), Gaps = 13/195 (6%)

Query: 183 QEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG 242
             GC   C +C  P +      R+ S V +E   L   GV  I   G ++ A     +  
Sbjct: 212 SRGCPFRCNWCAKPISGNRFHLRAASAVAEEMELLKRAGVEHIWF-GDDIFALNRHWV-- 268

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
            K    ++    + +   V+ R       +    L  A          + + V+SG+  I
Sbjct: 269 -KEFAEEVTKRNAAVPFKVQSR-ADLMGEETVLHLKTA------GCAEVWMGVESGAQTI 320

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           L +M++  T        +R+++    I        G+PGET  + + T+ LV K+     
Sbjct: 321 LDAMDKDITLDAIVASRERLKAA--GIRACFFLQFGYPGETWVELQQTIALVRKLRPDDI 378

Query: 363 FSFKYSPRLGTPGSN 377
                 P  GT    
Sbjct: 379 GISFSYPLPGTAFYE 393


>gi|217077831|ref|YP_002335549.1| radical SAM N- domain protein [Thermosipho africanus TCF52B]
 gi|217037686|gb|ACJ76208.1| radical SAM N- domain protein [Thermosipho africanus TCF52B]
          Length = 556

 Score = 67.7 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 65/378 (17%), Positives = 118/378 (31%), Gaps = 69/378 (18%)

Query: 60  DDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILR 119
             AD++V     + EKA       +  I               +      +  + E+ + 
Sbjct: 159 SKADILVY---GMGEKA-------ILEIARCIEKYGDINKCKDIDGVVWWSSKKPEKCVE 208

Query: 120 RSPIVNVVVGPQTYY---RLPELLERARFGKRVV---DTDYSVEDKFERLSI-------- 165
                 V   P+ Y    R   LL       R+V   D  Y +++  +            
Sbjct: 209 IPSFEEVKENPEKYNEAFRKMTLLTDPNRKIRIVQRQDNRYVIQNPPQSPLTQSEFDNLY 268

Query: 166 -------VDGGYNRKRGVTAFLTIQ------EGCDKFCTFCV-VPYTRGIEISRSLSQVV 211
                  V   YN+   V A  T++       GC   C FC    +     ISRS+  ++
Sbjct: 269 LLPFEREVHPYYNKFGKVKAIETVRFSITSVRGCYGMCAFCALTQHQTTHVISRSIDSIL 328

Query: 212 DEAR--KLIDNGVCEITLLGQNVNAWRGKG----------------------LDGEKCTF 247
           +E +  K +      I  +G       G                                
Sbjct: 329 EEVKILKRMKKFRGTINDVGGPTANMYGSDCSIRENKGQCSKFCLFPNICNNAKVNHEKL 388

Query: 248 SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIK----AHGDLDVLMP-YLHLPVQSGSDRI 302
            +LLYS+ ++ G+  +  ++    D+     K       +L    P  L L  +     +
Sbjct: 389 LNLLYSIKKVPGIKNVFISSGIRHDLVLEDKKYGDIFIKELPKFTPGQLKLAPEHSDKNV 448

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK-IGYAQ 361
           L+ M +      + Q  ++   V     + + FIVG PGE   +       + + +GY  
Sbjct: 449 LQIMRKP-DISLFLQFKEKYEKVAKKRYVVAYFIVGHPGEGMKENNNLKKFIKEKLGYRP 507

Query: 362 AFSFKYSPRLGTPGSNML 379
                ++P  GT  + + 
Sbjct: 508 QQIQIFTPTPGTLSTTIY 525


>gi|220921888|ref|YP_002497189.1| radical SAM domain-containing protein [Methylobacterium nodulans
           ORS 2060]
 gi|219946494|gb|ACL56886.1| Radical SAM domain protein [Methylobacterium nodulans ORS 2060]
          Length = 542

 Score = 67.7 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 47/330 (14%), Positives = 110/330 (33%), Gaps = 41/330 (12%)

Query: 58  SMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEI 117
            +  AD + ++  H++            +IR++       G     V+ G       E+ 
Sbjct: 73  DLAWADAVFVSGMHVQAA----------QIRDIAERAHAAGRVA--VLGGPSVSGSPEQ- 119

Query: 118 LRRSPIVNVVVGPQTYYRLPELLER--ARFGKRVVDTDYSVEDKF---ERLSIVDGGYNR 172
               P  + +   +      EL+ R  A  G+         +++    +  +        
Sbjct: 120 ---YPGFDYLHIGEIGDATDELIRRLDADAGRPPAQVRLETKERLGLADFPAPAYDQVPL 176

Query: 173 KRGVTAFLTIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVCEITLLGQN 231
           KR +   L    GC   C FC +P   G +   ++  Q++ E   ++        +    
Sbjct: 177 KRYLIGSLQFSSGCPYRCEFCDIPALYGRQPRLKTPEQLLSELDAIVAQPGHPAVV---- 232

Query: 232 VNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMS------DCLIKAHGDLD 285
              +      G +    ++L  L E +   R  Y      + +        +++     +
Sbjct: 233 --YFVDDNFIGNRKATREMLPHLVEWQK--RNGYPLQFACEATLNMAKQPEILELMRQAN 288

Query: 286 VLMPYLHLPVQSGSDRILKSMNRRHTAY-EYRQIIDRIRSVRPDIAISSDFIVGFPGETD 344
            +   + + +++     LKS++++H A     + I  + S    + ++S  I+G   +T 
Sbjct: 289 FI--TVFVGIETPELDALKSIDKQHNAAVPMLEGIATLNSY--GLEVTSGIILGLDTDTA 344

Query: 345 DDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
           +     +  +D+                TP
Sbjct: 345 ESEERLIAFIDRSRVPVLTMNLLQALPRTP 374


>gi|186474986|ref|YP_001856456.1| lipoyl synthase [Burkholderia phymatum STM815]
 gi|184191445|gb|ACC69410.1| lipoic acid synthetase [Burkholderia phymatum STM815]
          Length = 334

 Score = 67.7 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 82/220 (37%), Gaps = 10/220 (4%)

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
           + +  ++++    E  S  + G    +G   F+ + + C + C FC V + R   +    
Sbjct: 69  KQILREHNLHTVCEEASCPNIGECFGKGTATFMIMGDKCTRRCPFCDVGHGRPDPL--DP 126

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
            +  + AR +    +  + +   +    R    DG    F + +    E+    R+   T
Sbjct: 127 EEPGNLARTIAALKLKYVVITSVD----RDDLRDGGAAHFVECIQKTRELSPETRIEILT 182

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
               D    L +A G L+   P +         R+ K            +++   +++ P
Sbjct: 183 P---DFRGRLDRAIGILNAAPPDVMNHNLETVPRLYKEARPGSDYAHSLKLLKDFKALHP 239

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           ++A  S  +VG  GET+++    M  + +         +Y
Sbjct: 240 NVATKSGLMVGL-GETEEEILQVMRDLREHNVDMLTIGQY 278


>gi|282859545|ref|ZP_06268650.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Prevotella bivia JCVIHMP010]
 gi|282587773|gb|EFB92973.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Prevotella bivia JCVIHMP010]
          Length = 383

 Score = 67.7 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 46/243 (18%), Positives = 91/243 (37%), Gaps = 28/243 (11%)

Query: 186 CDKFCTFC-----VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL 240
           C   C +C     +       E        + + ++ I+    EI      ++     G 
Sbjct: 11  CASRCIYCGFYATLTKNAAKRE----NENTLTQRQRYINAVCKEIGKQKAELSTIYFGGG 66

Query: 241 DGEKCTFSDLLYSLSEIKGLV-----------RLRYTTSHPRDMSDCLIKAHGDLDVLMP 289
              + T  +L+    +I               +      +P D+++  ++    L     
Sbjct: 67  TPSQLTSEELVQIFEQINKTFLHHTNNGATQLKEITIECNPEDITEDFVQILKTLP--FN 124

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
            + + VQ+ SD  LK ++RRHT+ +  + I  +RSV  +  IS D + GFP ET +++ A
Sbjct: 125 RVSMGVQTFSDERLKFLHRRHTSSKIPEAIQLLRSVGIN-NISIDLMFGFPNETQEEWIA 183

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTPGSNM-----LEQVDENVKAERLLCLQKKLREQQVS 404
            ++    +      ++      GT    M     ++Q+DE    E    L  +L +    
Sbjct: 184 DIEKAIALNVEHISAYSLMYEEGTALYTMQKHQRVKQIDEEQYREMYEVLIDRLEKAGYE 243

Query: 405 FND 407
             +
Sbjct: 244 QYE 246


>gi|319796145|ref|YP_004157785.1| lipoic acid synthetase [Variovorax paradoxus EPS]
 gi|315598608|gb|ADU39674.1| lipoic acid synthetase [Variovorax paradoxus EPS]
          Length = 327

 Score = 67.7 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 44/268 (16%), Positives = 96/268 (35%), Gaps = 23/268 (8%)

Query: 109 VAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK--------RVVDTDYSVEDKF 160
           +A+ +    L R P+   VV      + PE + R + G         + +  + ++    
Sbjct: 19  LAKQKAAAKLSRIPV--KVVQTGEVLKKPEWI-RVKAGSPTTRFYEIKQILRESNLHTVC 75

Query: 161 ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN 220
           E  S  + G     G   F+ + + C + C FC V + R   +     + ++ A+ +   
Sbjct: 76  EEASCPNIGECFGNGTATFMIMGDKCTRRCPFCDVGHGRPDPL--DKDEPLNLAKTIAKL 133

Query: 221 GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKA 280
            +  + +   +    R    DG    F D + ++ E+  + ++       R   D  +  
Sbjct: 134 RLKYVVITSVD----RDDLRDGGSQHFVDCIQNIRELSPMTQIEILVPDFRGRDDRALDI 189

Query: 281 H-GDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGF 339
                  +M +        + R+ K             ++ + +++ PD+   S  +VG 
Sbjct: 190 LKAAPPDVMNHNL----ETAPRLYKEARPGSDYQFSLNLLKKFKALHPDVPTKSGIMVGL 245

Query: 340 PGETDDDFRATMDLVDKIGYAQAFSFKY 367
            GETD++    M  +           +Y
Sbjct: 246 -GETDEEILQVMRDMRAHDIDMLTIGQY 272


>gi|294142748|ref|YP_003558726.1| hypothetical protein SVI_3977 [Shewanella violacea DSS12]
 gi|293329217|dbj|BAJ03948.1| conserved hypothetical protein [Shewanella violacea DSS12]
          Length = 770

 Score = 67.7 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 62/347 (17%), Positives = 115/347 (33%), Gaps = 59/347 (17%)

Query: 161 ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLID 219
              S  D        +   + I  GC   C+FC +    G  I SRS   +++E + + D
Sbjct: 360 PHPSYGDNKIPAYDMIKTSINIMRGCFGGCSFCSITEHEGRIIQSRSQESILNEIKDIQD 419

Query: 220 N--GVCEIT--LLGQNVNAWR----------------------GKGLDGEKCTFSDLLYS 253
              G   +   L G   N +R                         LD +     DL  +
Sbjct: 420 KVPGFTGVISDLGGPTANMYRLGCKSVKAEKTCRRLSCVFPSICGHLDTDHSATIDLYRA 479

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRR-- 309
             E+ G+ ++   +    D++    +   +L    +  YL +  +   D  L  M +   
Sbjct: 480 AREVPGIKKVLIASGVRYDLATEDPRYVKELASHHVGGYLKIAPEHTEDGPLNKMMKPGM 539

Query: 310 HTAYEYRQIIDRI-RSVRPDIAISSDFIVGFPGETDDDFRATMDLV--DKIGYAQAFSFK 366
            T  +++++ D+  +       +   FI   PG T+DD       +  +K    Q  +F 
Sbjct: 540 GTYEKFKELFDKYSKEAGKKQYLIPYFISAHPGTTNDDMVNLALWLKGEKFKLDQVQNFY 599

Query: 367 YSPRL--------GTPGSNMLEQVDENV---KAERLLCLQK------------KLREQQV 403
            SP          G      ++   E V   K  R   L K             +RE  +
Sbjct: 600 PSPMANATTIYHTGLNSLKNVKHTSEKVTVPKKGRQRKLHKALLRYHDPAGWPMIREALI 659

Query: 404 SF-NDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGD 449
               +  +G  +  L+    +++ + + R+         S   + GD
Sbjct: 660 EMGREELIGNSLSCLVPAESRQEREAM-RNKGKGGANKLSNKASPGD 705


>gi|313203090|ref|YP_004041747.1| oxygeN-independent coproporphyrinogen iii oxidase [Paludibacter
           propionicigenes WB4]
 gi|312442406|gb|ADQ78762.1| oxygen-independent coproporphyrinogen III oxidase [Paludibacter
           propionicigenes WB4]
          Length = 375

 Score = 67.7 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 42/233 (18%), Positives = 88/233 (37%), Gaps = 20/233 (8%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEK 244
           C K CT+C            +   + D  + L+    + +  L  + ++     G     
Sbjct: 11  CSKRCTYCDF------YTEVAPDLIPDLVKHLVKEINIRKDYLKNETISTIYFGGGTPSI 64

Query: 245 CTFSDLLYSLSEIKGLVRLRYTT-----SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
            +       L  I  +  +         ++P D++     +   L      + + +QS  
Sbjct: 65  LSREQFSEILDGIFAVYTVEENAEITFEANPDDLTVDFFDSIKYLP--FNRISIGIQSFD 122

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
           D  LK +NRRHTA +  + +   ++   D  IS D I G P ++ +D+   +D+   +  
Sbjct: 123 DNDLKRINRRHTADQAIKAVKNAQNAGFD-NISIDLIYGLPLQSIEDWEKQLDIALSLNI 181

Query: 360 AQAFSFKYSPRLGTPGSN-----MLEQVDENVKAERLLCLQKKLREQQVSFND 407
               ++  +   GT         +++ + +    E  L L KK++E+     +
Sbjct: 182 QHVSAYGLTYEEGTALWKQREKGLVKPIIDETMNEMYLLLVKKMKEKGFEAYE 234


>gi|281411999|ref|YP_003346078.1| Radical SAM domain protein [Thermotoga naphthophila RKU-10]
 gi|281373102|gb|ADA66664.1| Radical SAM domain protein [Thermotoga naphthophila RKU-10]
          Length = 599

 Score = 67.7 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 42/226 (18%), Positives = 86/226 (38%), Gaps = 17/226 (7%)

Query: 177 TAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAW 235
            A + +  GC + C FC           RSL  +++   +++ N G  E++LL  +    
Sbjct: 251 RAIIEVARGCTRGCRFCHASVYYRPVRERSLENILENVEEMLKNTGYEEVSLLSLSTMDH 310

Query: 236 RGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPV 295
              G        S+LL   SE K  V +  T          +      +      L    
Sbjct: 311 TQIGE-----IVSELLKRYSEKKIAVSIPSTRMDR--FGVEIAGRIASVRK--TGLTFAP 361

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFR---ATMD 352
           ++ + R+   +N+  +  +    ++  +       +   F++G PGET++D       ++
Sbjct: 362 EASTQRLRNIINKNISEEDIFATLEAAKKSGWR-RVKLYFMMGLPGETNEDLEEMVELLE 420

Query: 353 LVDKIGY--AQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQK 396
            V ++G+    A    + P+  TP      Q+      E++  L++
Sbjct: 421 RVKRLGFKEVSASVSVFVPKPHTP-FQFARQISPEEAYEKIKTLKR 465


>gi|28198440|ref|NP_778754.1| lipoyl synthase [Xylella fastidiosa Temecula1]
 gi|182681112|ref|YP_001829272.1| lipoyl synthase [Xylella fastidiosa M23]
 gi|32129709|sp|Q87DZ9|LIPA_XYLFT RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|238691100|sp|B2I923|LIPA_XYLF2 RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|28056524|gb|AAO28403.1| lipoic acid synthetase [Xylella fastidiosa Temecula1]
 gi|182631222|gb|ACB91998.1| lipoic acid synthetase [Xylella fastidiosa M23]
 gi|307579560|gb|ADN63529.1| lipoyl synthase [Xylella fastidiosa subsp. fastidiosa GB514]
          Length = 373

 Score = 67.7 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 35/210 (16%), Positives = 69/210 (32%), Gaps = 14/210 (6%)

Query: 161 ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN 220
           E  +  +       G   F+ + E C + C+FC V    G        + +  AR + + 
Sbjct: 82  EEAACPNIHECFSHGTATFMILGEVCTRRCSFCDV--AHGRPKPPDPEEPISLARTVAEM 139

Query: 221 GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD---MSDCL 277
           G+  + +   +    R    DG    F D + ++ +     R+   T   R    M   L
Sbjct: 140 GLKYVVVTSVD----RDDLRDGGAQHFVDCIAAIRQSAPQTRIEILTPDFRGKGRMDRAL 195

Query: 278 IKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIV 337
                    +  +    V +        +           ++ R ++  P +   S  ++
Sbjct: 196 DILAACPPDVFNHNVETVPALYPN----VRPGADYQWSLTLLKRFKAQHPQVPTKSGIML 251

Query: 338 GFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           G  GET D  +AT+  +           +Y
Sbjct: 252 GL-GETLDQVQATLRDLRAHDVDMVTVGQY 280


>gi|71274929|ref|ZP_00651217.1| Lipoate synthase [Xylella fastidiosa Dixon]
 gi|71898818|ref|ZP_00680986.1| Lipoate synthase [Xylella fastidiosa Ann-1]
 gi|170729800|ref|YP_001775233.1| lipoyl synthase [Xylella fastidiosa M12]
 gi|238687967|sp|B0U641|LIPA_XYLFM RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|71164661|gb|EAO14375.1| Lipoate synthase [Xylella fastidiosa Dixon]
 gi|71731404|gb|EAO33467.1| Lipoate synthase [Xylella fastidiosa Ann-1]
 gi|167964593|gb|ACA11603.1| lipoic acid synthetase [Xylella fastidiosa M12]
          Length = 373

 Score = 67.7 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 35/212 (16%), Positives = 70/212 (33%), Gaps = 18/212 (8%)

Query: 161 ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN 220
           E  +  +       G   F+ + E C + C+FC V    G        + +  AR + + 
Sbjct: 82  EEAACPNIHECFSHGTATFMILGEVCTRRCSFCDV--AHGRPKPPDPEEPISLARTVAEM 139

Query: 221 GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD---MSDCL 277
           G+  + +   +    R    DG    F D + ++ +     R+   T   R    M   L
Sbjct: 140 GLKYVVVTSVD----RDDLRDGGAQHFVDCIAAIRQSAPQTRIEILTPDFRGKGRMDRAL 195

Query: 278 IKAHGDLDVLMPYL--HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDF 335
                    +  +    +P    +      +           ++ R ++  P +   S  
Sbjct: 196 DILAACPPDVFNHNVETVPALYPN------VRPGADYQWSLTLLKRFKAQHPQVPTKSGI 249

Query: 336 IVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           ++G  GET D  +AT+  +           +Y
Sbjct: 250 MLGL-GETLDQVQATLRDLRAHDVDMVTVGQY 280


>gi|326202494|ref|ZP_08192363.1| cobalamin B12-binding domain protein [Clostridium papyrosolvens DSM
           2782]
 gi|325987612|gb|EGD48439.1| cobalamin B12-binding domain protein [Clostridium papyrosolvens DSM
           2782]
          Length = 448

 Score = 67.7 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 47/377 (12%), Positives = 135/377 (35%), Gaps = 61/377 (16%)

Query: 36  MNVYDSLRMEDMFFSQGYERVNSMDD--ADLIVLNTCHIREKAAEKVYSFLGRIRNLKNS 93
           M+ +D   + DM   + Y   + ++D   D+I   +  +           +  +  L   
Sbjct: 36  MDEHDIE-IFDMRVDKDYTLKSKIEDFNPDVIGFTSLTV----------NVNTVIRLSEE 84

Query: 94  RIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTD 153
             K   ++++++ G  A    ++  +  P ++ ++  +    + + L   ++G  +   D
Sbjct: 85  VKKNYPNIIILIGGHHASVSAKDFYK--PSIDAIMIGEGIETMKQYLNTLQYGGDIEQID 142

Query: 154 -----------------YSVEDKFERL------SIVDGGYNRKRGVTAFLTIQEGCDKFC 190
                            Y   + F+              +  +    A +   +GC   C
Sbjct: 143 GMAFNKNGEFIRNKNRAYPALESFKFPNRNLTKKYRHMYFTEEYKPLATIRTSKGCPHRC 202

Query: 191 TFCV-VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSD 249
            FC     + G  + R + ++V+E +++ +           + +      +D        
Sbjct: 203 KFCSLWKESGGKYMKREIERIVEELKQIEE----PYVFFADDESFIDMNYMD-------L 251

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDM--SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307
           L   + +  G+ +  YT            L++   ++   +  +H+ ++S     L + N
Sbjct: 252 LAEEIKK-SGIKKKYYTFVRSDTFIKHTDLMRKWAEIG--LSKVHMGIESHRSSDLDNWN 308

Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           +++T+    + ++    +   I +++  I+      + DF   ++  + + +        
Sbjct: 309 KKNTSVNNVRAVEIAHEM--GIKVTATIIISQDF-VEQDFDDMLEFSNTLNFDSIMYTVL 365

Query: 368 SPRLGTPGSNMLEQVDE 384
           +P  GT    + ++V++
Sbjct: 366 TPLPGT---ELYDEVED 379


>gi|296132077|ref|YP_003639324.1| Radical SAM domain protein [Thermincola sp. JR]
 gi|296030655|gb|ADG81423.1| Radical SAM domain protein [Thermincola potens JR]
          Length = 454

 Score = 67.7 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 50/281 (17%), Positives = 89/281 (31%), Gaps = 36/281 (12%)

Query: 99  GDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA-----------RFGK 147
               ++  G       E ++   P ++  V  +     P LL+             R GK
Sbjct: 98  PQARIIAGGTGFSLFPERLMLELPEIDYGVVGEAEVTFPALLDNLDNPPPLPGLCLREGK 157

Query: 148 RV-VDTDYSVEDKFERLSIVDGGYNRK-----RGVTAFLTIQ--EGCDKFCTFCVVPYTR 199
            + V   +   D    +       N             + I+   GC   C +CV P  +
Sbjct: 158 GIRVTPPFREFDMANYIPPYRQLLNPSLYLDINSYVPAIGIETKRGCPFNCAYCVYPKLQ 217

Query: 200 GI-EISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257
           G     R    VVDE   L    G+         +N  +G     E+     +   L+  
Sbjct: 218 GRKLRCRPPKAVVDEIEVLHKEYGITSFHFTDPVLNIPQGH---LEEICHELIRRKLA-- 272

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
             +    +      +  +  + A    +          Q   D + K++N          
Sbjct: 273 --VRWDGFMREDQLNEKNIALFAKAGCECFSFSPDGLCQEALDILQKNLNE-------AD 323

Query: 318 IIDRIR-SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
           I+   R + +  I     F+V  PGET+   R ++D ++KI
Sbjct: 324 ILKAARLAAQTGITTVYHFMVNVPGETERTCRKSIDFLEKI 364


>gi|297569134|ref|YP_003690478.1| Protein of unknown function DUF2344 [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296925049|gb|ADH85859.1| Protein of unknown function DUF2344 [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 848

 Score = 67.7 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 52/285 (18%), Positives = 107/285 (37%), Gaps = 48/285 (16%)

Query: 180 LTIQEGCDKFCTFC----VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW 235
           + I  GC + C FC    +    R  E SR L +++ +  +     V  ++L        
Sbjct: 263 VEIARGCTRGCRFCQAGVIYRPVREREPSRVLQEILGKIEQTGFEEVALLSLSS------ 316

Query: 236 RGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD--MSDCLIKAHGDLDVLMPYLHL 293
                 G+    ++LL  L +     R+  +    R   ++  +++    +        L
Sbjct: 317 ------GDYACINELLGQLMDALERRRVSVSLPSMRVGSLTPEMMEQIKRVRK--TGFTL 368

Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA---ISSDFIVGFPGETDDDFRAT 350
             ++GSDR+ + +N+  +      ++   RS    +    I   F+ G P ET++D  A 
Sbjct: 369 APEAGSDRLRRVINKGISEE---DLLAASRSAF-GLGWKLIKLYFMFGLPTETEEDLAAI 424

Query: 351 MDLVDKI---GYAQAFSFKYS-----PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQ 402
           ++L  K+   G A       S     P+  TP      Q+       R+  L+++LR ++
Sbjct: 425 VELAHKVLKTGPAGRCQVTVSSAVFVPKPHTP-FEREPQLSIEQGFARIDFLKQQLRHKK 483

Query: 403 VSF-----NDACV-------GQIIEVLIEKHGKEKGKLVGRSPWL 435
                     + +        + +  L+E+  ++  +L   S   
Sbjct: 484 FKLKWHDPRQSYLEGVFCRGDRRLAALVERAWRDGARLDAWSDHF 528


>gi|193213493|ref|YP_001999446.1| radical SAM domain-containing protein [Chlorobaculum parvum NCIB
           8327]
 gi|193086970|gb|ACF12246.1| Radical SAM domain protein [Chlorobaculum parvum NCIB 8327]
          Length = 611

 Score = 67.7 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 34/234 (14%), Positives = 67/234 (28%), Gaps = 18/234 (7%)

Query: 124 VNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQ 183
             ++ G   Y    E L       R  +        F         Y R+R     ++  
Sbjct: 202 AQMIEGEFRYEPRHEWL-------RPEEFPMPDFKGFPFADTPFDAYLRRRFEGLPVSFS 254

Query: 184 EGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
            GC   C +C            S    V+                G  +       ++  
Sbjct: 255 RGCVNGCIYCSEKQIWKRFRHLSPEASVERLAAYKQR-------FGIGLFYICDSLINFS 307

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
           +   S+    +          +     + +   L             +   ++S S+ +L
Sbjct: 308 EAWLSEFCDLILSSDLQPLFTFAFCDLKHLKPELTAKMAAAG--FTRITFGLESASENVL 365

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
             M+++      R+ I  + + R  ++I    I+ FPGE   D   T+    +I
Sbjct: 366 TRMHKKLDLDLARENI--VAATRNGLSIHVSTIINFPGEQTADALDTIRFFREI 417


>gi|167766932|ref|ZP_02438985.1| hypothetical protein CLOSS21_01449 [Clostridium sp. SS2/1]
 gi|167710907|gb|EDS21486.1| hypothetical protein CLOSS21_01449 [Clostridium sp. SS2/1]
          Length = 580

 Score = 67.7 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 50/294 (17%), Positives = 102/294 (34%), Gaps = 25/294 (8%)

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +  I  +     K   D+ + + G     +  E+LRR P V  V+  +      E+L+  
Sbjct: 71  IEYIERVIREIHKLLPDVPIWLGGPEVSYDSREVLRRLPQVTGVMKGEGEVTFLEVLDHY 130

Query: 144 ---------------RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
                          R    +V+T +       ++  V            +     GC  
Sbjct: 131 HGKRDDLSKIPGLTYRNEDEIVETPWRPVMDLSKVPFVYEHIEDFEHKIIYYESSRGCPF 190

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS 248
            C++C+          R+LS V  E +  +D+ V ++  + +  N      ++  +    
Sbjct: 191 SCSYCL-SSIDKCLRFRNLSLVKKELQFFLDHKVPQVKFVDRTFNCRHDHAMEIWRYIKE 249

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
                     G+    +  +      D  I+   D+   +  L + VQS +   +  ++R
Sbjct: 250 HD-------NGITNFHFEVAADVLKDDE-IELISDMRPGLIQLEIGVQSTNIDTITEIHR 301

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           +    +   I+ RI +   +I    D I G P E  + F+ +   V ++   Q 
Sbjct: 302 KMDFKKVADIVTRI-NAGHNIHQHLDLIAGLPYEDLESFKQSFQDVYEVHPEQL 354


>gi|325300681|ref|YP_004260598.1| Radical SAM domain-containing protein [Bacteroides salanitronis DSM
           18170]
 gi|324320234|gb|ADY38125.1| Radical SAM domain protein [Bacteroides salanitronis DSM 18170]
          Length = 545

 Score = 67.7 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 62/355 (17%), Positives = 115/355 (32%), Gaps = 46/355 (12%)

Query: 46  DMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVV 105
            M  ++ + R   +  A   + N         E +   LGRI+ L         D  + +
Sbjct: 46  GMASAEVFRRKPDIVAATCWLFN--------HEMLLHTLGRIKAL-------LPDCCITL 90

Query: 106 AGCVAQAEGEEILRRSPIVNVVV---GPQTYYRLPELLERARFGKRV-----VDTDYSVE 157
            G     + E  LR  P VN V    G + + R  E+  +      +     +DT  +  
Sbjct: 91  GGPEFLGDNERFLRNYPFVNCVFRGEGEEVFARWLEIWNKPEAWHTITGLCYLDTVSTYH 150

Query: 158 DK-------FERL-SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209
           D        F+RL    +  +         L    GC   C FC V        +  +  
Sbjct: 151 DNGRAQVMHFDRLVPPEESPFFNWSKPFVQLETTRGCFNTCAFC-VSGGEKPVRTLPIET 209

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSH 269
           +      + ++ +  I +L +  N               DL     +I       +   H
Sbjct: 210 IRRRISLIQEHYIRNIRVLDRTFNYNTRHA-----RALLDLFREFPDI-----RFHLEVH 259

Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329
           P  +S+ L +    +     +L   +QS    +L    R     +    ++ + ++ P++
Sbjct: 260 PALLSEELKEILAAMPKGQLHLEAGIQSLHQEVLTVSRRAGDLADALSGLEFLCAL-PNL 318

Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
              +D I G P       +   D V  +   +A   +       PG+ M  +  E
Sbjct: 319 ETHADLIAGLP---LYHLKEIFDDVRTLASYRAGEIQLESLKLLPGTEMRRRSPE 370


>gi|331086581|ref|ZP_08335659.1| hypothetical protein HMPREF0987_01962 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330410414|gb|EGG89846.1| hypothetical protein HMPREF0987_01962 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 580

 Score = 67.7 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 45/286 (15%), Positives = 98/286 (34%), Gaps = 25/286 (8%)

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           L  +  L     K    + + + G     +   +L+R P V  V+  +      EL+   
Sbjct: 68  LDYVEQLVREAGKILPGVPIWIGGPEVSYDSPAVLQRLPEVFGVMKGEGEETFRELVHYY 127

Query: 144 RFGK---------------RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
             G                +++D  +       ++  V       +    +     GC  
Sbjct: 128 MEGGSLEKIDGITYRGEKGQILDNPWRPVMDLSKVPFVYHDMKDFQNKIVYYETSRGCPF 187

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS 248
            C++C+          R L  V  E +  +D  V ++  + +  N   G  ++  +    
Sbjct: 188 SCSYCL-SSVDKCLRFRDLELVKKELQFFLDEKVPQVKFVDRTFNCKHGHAMEIWRYL-- 244

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
                +    G+    +  S    +++  +     +   +  L + VQS + R ++ + R
Sbjct: 245 -----IEHDNGITNFHFEVSADL-LNEEELSLISQMRPGLIQLEIGVQSTNARTIREIRR 298

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
                E  +I+ +I +   ++    D I G P E  + FR + + V
Sbjct: 299 TMKFEEVARIVRQI-NAYGNVHQHLDLIAGLPYEDYESFRKSFNDV 343


>gi|317499595|ref|ZP_07957858.1| B12 binding domain-containing protein [Lachnospiraceae bacterium
           5_1_63FAA]
 gi|316893144|gb|EFV15363.1| B12 binding domain-containing protein [Lachnospiraceae bacterium
           5_1_63FAA]
          Length = 575

 Score = 67.7 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 50/294 (17%), Positives = 102/294 (34%), Gaps = 25/294 (8%)

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +  I  +     K   D+ + + G     +  E+LRR P V  V+  +      E+L+  
Sbjct: 71  IEYIERVIREIHKLLPDVPIWLGGPEVSYDSREVLRRLPQVTGVMKGEGEVTFLEVLDHY 130

Query: 144 ---------------RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
                          R    +V+T +       ++  V            +     GC  
Sbjct: 131 HGKRDDLSKIPGLTYRNEDEIVETPWRPVMDLSKVPFVYEHIEDFEHKIIYYESSRGCPF 190

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS 248
            C++C+          R+LS V  E +  +D+ V ++  + +  N      ++  +    
Sbjct: 191 SCSYCL-SSIDKCLRFRNLSLVKKELQFFLDHKVPQVKFVDRTFNCRHDHAMEIWRYIKE 249

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
                     G+    +  +      D  I+   D+   +  L + VQS +   +  ++R
Sbjct: 250 HD-------NGITNFHFEVAADVLKDDE-IELISDMRPGLIQLEIGVQSTNIDTITEIHR 301

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           +    +   I+ RI +   +I    D I G P E  + F+ +   V ++   Q 
Sbjct: 302 KMDFKKVADIVTRI-NAGHNIHQHLDLIAGLPYEDLESFKQSFQDVYEVHPEQL 354


>gi|326791217|ref|YP_004309038.1| oxygen-independent coproporphyrinogen III oxidase [Clostridium
           lentocellum DSM 5427]
 gi|326541981|gb|ADZ83840.1| oxygen-independent coproporphyrinogen III oxidase [Clostridium
           lentocellum DSM 5427]
          Length = 376

 Score = 67.7 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 38/214 (17%), Positives = 73/214 (34%), Gaps = 10/214 (4%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C   C +C     +  E        VD   + ++    ++   G  + +    G      
Sbjct: 12  CASKCYYCDFLSFKRHEK---QEAYVDALIQEMEQTKKDLV-SGTTIKSIFIGGGTPTVL 67

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY----LHLPVQSGSDR 301
               L   L  +     +        + +   I     L VL  Y    + L +QS  D 
Sbjct: 68  PPLLLDKLLKAVVSCFNIEPDAEWTIEANPGTID-IEKLQVLRKYPITRISLGLQSTHDD 126

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
           +L+ + R HT  ++ + I  I+       I++D +   PG+T++ F  T++ V       
Sbjct: 127 LLRKIGRIHTFKDWEESIGLIKQHT-SWEINTDLMFALPGQTEEAFLETLNTVTAYDIDH 185

Query: 362 AFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQ 395
              +      GT    + E+    V ++ L    
Sbjct: 186 LSVYALIIEEGTTFYKLYEEGKLEVASDELDRRM 219


>gi|254513667|ref|ZP_05125731.1| radical SAM domain protein [Rhodobacteraceae bacterium KLH11]
 gi|221532176|gb|EEE35173.1| radical SAM domain protein [Rhodobacteraceae bacterium KLH11]
          Length = 620

 Score = 67.7 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 58/322 (18%), Positives = 113/322 (35%), Gaps = 42/322 (13%)

Query: 80  VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL 139
              F+   R LK          L+V  G     +  ++   +  V+++V  +  + + ++
Sbjct: 60  YKQFINVARTLKQ----YNDRCLIVFGGNHVSNQAAKVFTETHDVDIIVNGEGEFTIADI 115

Query: 140 LERARF--------GKRVVDTDYSVEDKFERLSIVD----------------GGYNRKRG 175
           L             G   V TD  VE    R  IVD                      R 
Sbjct: 116 LHAHVNSLPLNGVDGISFVGTDGEVETTAPRARIVDLDTIPSPILNGTIPLTDHRGAFRY 175

Query: 176 VTAFLTIQEGCDKFCTFCVVPYTRG-IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA 234
             A +    GC   C+FC      G    + S+ ++  E  +L+  G   + L   N   
Sbjct: 176 DVALIETNRGCPYQCSFCYWGGATGQKIRAFSMDRLRAETTELVRAGAETLVLCDANFGM 235

Query: 235 WRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS--HPRDMSDCLIKAHGDLDVLMPYLH 292
            R          F +LL  L E  G      T+   +   M   +++       L     
Sbjct: 236 LRQD------LEFVELLIELKERYGRPHALETSWAKNKNAMFYEIVQRMNKAG-LQSSFT 288

Query: 293 LPVQSGSDRILKSMNRRHTA-YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351
           + +Q+ ++  L  MNR++    +++++   ++    ++ + ++ I G PGET + F    
Sbjct: 289 IALQTLNENALDQMNRKNMKINDWKELALWLQEQ--NLDVYAELIWGAPGETLESFLNGY 346

Query: 352 DLVDKIGYAQAFSFKYSPRLGT 373
           D + +   ++  ++       T
Sbjct: 347 DELSEY-VSRIATYPMLLLPNT 367


>gi|262406870|ref|ZP_06083419.1| coproporphyrinogen III oxidase [Bacteroides sp. 2_1_22]
 gi|262355573|gb|EEZ04664.1| coproporphyrinogen III oxidase [Bacteroides sp. 2_1_22]
          Length = 335

 Score = 67.7 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 46/196 (23%), Positives = 75/196 (38%), Gaps = 13/196 (6%)

Query: 222 VCEITLLGQNVNAWR---GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPR--DMSDC 276
           + +  L G+++       G     EK  F  +  ++ +  GL   +  T      D+S  
Sbjct: 1   MRKEYLKGEDIETIYFGGGTPSQLEKEDFEQIFDTIRKHYGLNHCQEITLEANPDDLSQE 60

Query: 277 LIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFI 336
            +     L      L + +Q+  D  LK + RRH A    + IDR R       IS D I
Sbjct: 61  YLGMLSSLP--FNRLSMGIQTFDDATLKLLRRRHNARTAIEAIDRCRKAGFQ-NISIDLI 117

Query: 337 VGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ-----VDENVKAERL 391
            G PGET + +   +     +      ++       TP  NML+Q     VDE+   E  
Sbjct: 118 YGLPGETKERWENDLRQAISLNVEHISAYHLIYEEDTPIYNMLKQHQISEVDEDSSLEFF 177

Query: 392 LCLQKKLREQQVSFND 407
             L + L++      +
Sbjct: 178 TLLIEHLQKAGFEHYE 193


>gi|237714861|ref|ZP_04545342.1| coproporphyrinogen III oxidase [Bacteroides sp. D1]
 gi|229445186|gb|EEO50977.1| coproporphyrinogen III oxidase [Bacteroides sp. D1]
          Length = 337

 Score = 67.7 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 46/196 (23%), Positives = 75/196 (38%), Gaps = 13/196 (6%)

Query: 222 VCEITLLGQNVNAWR---GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPR--DMSDC 276
           + +  L G+++       G     EK  F  +  ++ +  GL   +  T      D+S  
Sbjct: 3   MRKEYLKGEDIETIYFGGGTPSQLEKEDFEQIFDTIRKHYGLNHCQEITLEANPDDLSQE 62

Query: 277 LIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFI 336
            +     L      L + +Q+  D  LK + RRH A    + IDR R       IS D I
Sbjct: 63  YLGMLSSLP--FNRLSMGIQTFDDATLKLLRRRHNARTAIEAIDRCRKAGFQ-NISIDLI 119

Query: 337 VGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ-----VDENVKAERL 391
            G PGET + +   +     +      ++       TP  NML+Q     VDE+   E  
Sbjct: 120 YGLPGETKERWENDLRQAISLNVEHISAYHLIYEEDTPIYNMLKQHQISEVDEDSSLEFF 179

Query: 392 LCLQKKLREQQVSFND 407
             L + L++      +
Sbjct: 180 TLLIEHLQKAGFEHYE 195


>gi|295092643|emb|CBK78750.1| iron-only hydrogenase maturation protein HydE [Clostridium cf.
           saccharolyticum K10]
          Length = 399

 Score = 67.7 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 42/297 (14%), Positives = 92/297 (30%), Gaps = 48/297 (16%)

Query: 110 AQAEGEEILRRSPI-----VNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLS 164
           A    EE+           V  V G     R  EL+     G+++ + ++S         
Sbjct: 13  AGIFPEELFSDRSEREGGDVRFVPGEDRERRCLELISCLARGEQLTEEEFSEILSVRTWK 72

Query: 165 IVDGGYNRKRGVTA-----------FLTIQEGCDKFCTFCVVPYTRGIEISR---SLSQV 210
                +   R +              +     C   C +C +  +   E+SR   +  ++
Sbjct: 73  TAGLVFRTARRIREKYYGKRVFIRGLIEFTNYCRNDCYYCGIRRS-NQEVSRYRLTPDEI 131

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270
           +    +    G     L G       G+ L+ E         +L+++   ++ R+     
Sbjct: 132 LSCCEEGRRLGFRTFVLQG-------GEDLNFEGREGLRGDRALAKVVEEIKRRFPDCAV 184

Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII----------D 320
                  +        +        Q+G+DR L   +       YR++           +
Sbjct: 185 T------LSVGERDREVYEQW---FQAGADRYL-LRHETADEEHYRRLHPTELSGQRRKE 234

Query: 321 RIRSVRP-DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
            +R+++       +  +VG PG+T       +  + ++         + P   TP +
Sbjct: 235 CLRALKDIGFQTGAGMMVGSPGQTVRHLAEDLVFLRELQPEMVGIGPFLPHHATPFA 291


>gi|322806960|emb|CBZ04530.1| fe-S oxidoreductase [Clostridium botulinum H04402 065]
          Length = 561

 Score = 67.7 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 48/308 (15%), Positives = 104/308 (33%), Gaps = 34/308 (11%)

Query: 60  DDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILR 119
           + ADL+   +C+I           L  +  L N          +V  G     + E  LR
Sbjct: 54  EKADLVAF-SCYIWN---------LEYVEELANLIKLVKPSTEIVFGGPEVSYDSESFLR 103

Query: 120 RSPIVNVVVGPQTYYRLPELLERARFG----------KRVVDTDYSVEDKFERLSIVDGG 169
           + P   V+ G         +  +              K +   +Y+ E     +  V   
Sbjct: 104 KVPGEYVIEGEGEETFREFIKCKIENKSLDRVKGLYIKTLNGIEYTGERHNISMDSVVFP 163

Query: 170 YNRKRGV---TAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEIT 226
           Y  +  +     +     GC   C +C+     G      + +V  E + L+D  V  I 
Sbjct: 164 YKEEEDLKNKIVYYEASRGCPFKCKYCLSSTLHG-VRFHDIERVKKEIKFLVDKNVKLIK 222

Query: 227 LLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV 286
            + +  N      +   +   +    +           +       ++   ++       
Sbjct: 223 FVDRTFNCNHKFAMGIWEYILNLDTDA---------TFHFEISADLLTKEELEILSKGKE 273

Query: 287 LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDD 346
                 + VQ+ ++ +LK++NR       ++ ++ +++++ +I    D I G PGE  + 
Sbjct: 274 GRIQFEVGVQTTNNEVLKNINRHVNFQTIKEKVEELKNLK-NIKQHLDLIAGLPGEDYNS 332

Query: 347 FRATMDLV 354
           F+ + + V
Sbjct: 333 FKNSFNDV 340


>gi|296446363|ref|ZP_06888308.1| Radical SAM domain protein [Methylosinus trichosporium OB3b]
 gi|296256136|gb|EFH03218.1| Radical SAM domain protein [Methylosinus trichosporium OB3b]
          Length = 517

 Score = 67.7 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 49/309 (15%), Positives = 106/309 (34%), Gaps = 32/309 (10%)

Query: 50  SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCV 109
            +G   V+    A+ I      I  K +++      R+  L +   + G    V++ G  
Sbjct: 54  DEGVAPVDLDHPAEWI-----AITGKVSQR-----RRMIALADEFRRRGK--KVIIGGPY 101

Query: 110 AQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGG 169
           A    + +       +V+V  +      E+    R G R  D  +  +   ++       
Sbjct: 102 ASLSPDHLRDHC---DVLVCGEAEEIAGEIFSDLRAG-RPRDAYFGEKPSLDKSPPPRWE 157

Query: 170 -YNRKRGVTAFLTIQEGCDKFCTFC-VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITL 227
            Y   R +   +    GC   C FC V+ Y    +  + ++ V+ E   L  +G     L
Sbjct: 158 LYPTSRAMLGAVQTSRGCPFECEFCDVIQYLGRKQRHKPIANVIAELDNLWRHGFRATFL 217

Query: 228 LGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK--GLVRLRYTTSHPRDMSDCLIKAHGDLD 285
              N  A+        +    +LL +++  +  G      T        D  +     ++
Sbjct: 218 ADDNFTAY--------RAHCKELLEAMAHWRRAGHAMDFVTQISIDATRDEELMDML-VE 268

Query: 286 VLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP-DIAISSDFIVGFPGETD 344
             +  + + +++ +   L+   +R        I   ++ +    I++    IVGF  +  
Sbjct: 269 AGVHQVFVGIETPNAESLRETGKR--QNLKIDIAGEVQKLIDRRISVMGGMIVGFDHDGP 326

Query: 345 DDFRATMDL 353
           + F    + 
Sbjct: 327 NVFSQQYEF 335


>gi|71901785|ref|ZP_00683853.1| Lipoate synthase [Xylella fastidiosa Ann-1]
 gi|71728444|gb|EAO30607.1| Lipoate synthase [Xylella fastidiosa Ann-1]
          Length = 373

 Score = 67.7 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 35/210 (16%), Positives = 69/210 (32%), Gaps = 14/210 (6%)

Query: 161 ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN 220
           E  +  +       G   F+ + E C + C+FC V    G        + +  AR + + 
Sbjct: 82  EEAACPNIHECFSHGTATFMILGEVCTRRCSFCDV--AHGRPKPPDPEEPISLARTVAEM 139

Query: 221 GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD---MSDCL 277
           G+  + +   +    R    DG    F D + ++ +     R+   T   R    M   L
Sbjct: 140 GLKYVVVTSVD----RDDLRDGGAQHFVDCIAAIRQSAPQTRIEILTPDFRGKGRMDRAL 195

Query: 278 IKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIV 337
                    +  +    V +        +           ++ R ++  P +   S  ++
Sbjct: 196 DILAACPPDVFNHNVETVPALYPN----VRPGADYQWSLTLLKRFKAQHPQVPTKSGIML 251

Query: 338 GFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           G  GET D  +AT+  +           +Y
Sbjct: 252 GL-GETLDQVQATLRDLRAHDVDMVTVGQY 280


>gi|323706091|ref|ZP_08117660.1| cobalamin B12-binding domain protein [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323534535|gb|EGB24317.1| cobalamin B12-binding domain protein [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 558

 Score = 67.3 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 62/346 (17%), Positives = 122/346 (35%), Gaps = 63/346 (18%)

Query: 60  DDADLIVLN-----------TCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGC 108
           DD DLI+ N           +C+I           + ++  L     K   D+L+V+ G 
Sbjct: 40  DDLDLILYNILNKRPDVIGFSCYIWN---------IDKVLKLCEYIKKVNKDILIVLGGP 90

Query: 109 VAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVD---TDYSVEDK------ 159
               + +++L +  + + +V  +       LL++   G+ V D     Y  + K      
Sbjct: 91  EVSFDLDDLL-KIGVADFIVLGEGEATFKNLLQKIHNGENVYDLNGISYMKDGKVISREN 149

Query: 160 -----FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEA 214
                 + +     G +    +  + T   GC   C++C+           S+ +V D+ 
Sbjct: 150 TDYVCLDDIPFPYDGEDISNKLVYYET-SRGCPFRCSYCL-SSLDNKLRYASIEKVRDDL 207

Query: 215 RKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR-LRYTTSHPRDM 273
            KL + G   + L+                 +F   +    EI  ++R LR  T    ++
Sbjct: 208 EKLTNMGAKIVKLID---------------RSFDSNIKRAVEILDIIRGLRSDTVFHCEV 252

Query: 274 SDCLIKAH------GDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
           +  L+         G  D +     + +Q+ +   LK+++R          I  I  +  
Sbjct: 253 NPELVNEVFINSLKGIEDRI--QFEVGIQTTNKETLKNVSRNPDVSGALNGIKLI--INA 308

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
            + +  D I G PG+  D    + + V K+   +          GT
Sbjct: 309 GVKVHVDLIAGLPGDDFDSIVKSFNDVYKLNPDEIQLGFLKLLKGT 354


>gi|302534347|ref|ZP_07286689.1| coproporphyrinogen III oxidase [Streptomyces sp. C]
 gi|302443242|gb|EFL15058.1| coproporphyrinogen III oxidase [Streptomyces sp. C]
          Length = 416

 Score = 67.3 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 59/285 (20%), Positives = 102/285 (35%), Gaps = 46/285 (16%)

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV-PYTRGIEI------ 203
           D D   ED       ++G   R  G    +     C   C +C    YT           
Sbjct: 13  DGDPMPEDGSLPSHALEGAGERPLGFYLHVPY---CATRCGYCDFNTYTATELRGTGGVL 69

Query: 204 -SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS---DLLYSLSEIKG 259
            SR      + A  LID       +LG +  A R   + G   T     DL+  L+ I  
Sbjct: 70  ASRE-----NYADTLIDEVRLARKVLGDDPRAVRTVFVGGGTPTLLPAGDLVRMLAAI-- 122

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL------------HLPVQSGSDRILKSMN 307
             R  +  +   +++        + + + P                 +QS    +LK ++
Sbjct: 123 --RDEFGLAEDAEVTTE-----ANPESVNPEYLAELRAGGFNRISFGMQSARQHVLKVLD 175

Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           R HT       +   R+   +  ++ D I G PGE+DDD+RA+++     G     ++  
Sbjct: 176 RTHTPGRPEACVAEARAAGFE-HVNLDLIYGTPGESDDDWRASLEAALGAGPDHVSAYAL 234

Query: 368 SPRLGTPGSN--MLEQVD---ENVKAERLLCLQKKLREQQVSFND 407
               GT  +      +V    ++V A+R L   + + E   S+ +
Sbjct: 235 IVEEGTQLARRIRRGEVPMTDDDVHADRYLIADQVMAEAGYSWYE 279


>gi|257095781|ref|YP_003169422.1| Radical SAM domain-containing protein [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257048305|gb|ACV37493.1| Radical SAM domain protein [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
          Length = 466

 Score = 67.3 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 47/282 (16%), Positives = 90/282 (31%), Gaps = 28/282 (9%)

Query: 103 VVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFER 162
           VV+ G    A  +E    +     VVG +      ++L  A  G+     D    +    
Sbjct: 130 VVMGGLHVTALPQE--AIAHGAAAVVG-EGESVWRDVLHDAERGRLRPLYDARGAEFNLA 186

Query: 163 LSIVDGGY--NRKRGVTAFLTIQEGCDKFCTFCVVP-YTRGIEISRSLSQVVDEARKLID 219
            + +      +  R     +    GC   C+FC            +  +QV+ E   +  
Sbjct: 187 AAPMPAYELLDIARYNRITVQTSRGCPWRCSFCASSILLTHKYKQKPAAQVLAEIDHIRS 246

Query: 220 NGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSH-PRDMSDCLI 278
                      + +                    L EI       +  S       D L+
Sbjct: 247 LWPRPFIEFADDNSFCHRAYW----------KALLPEIAKRQIKWFAESDLAIHEDDELL 296

Query: 279 KAHGDLDVLMPYLHLPVQSGSDRIL-----KSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
           +   +       + + ++S +   L     K   +     +YR  I RI++    I +++
Sbjct: 297 RLMREAG--CVEVLIGLESPTSEGLDGVETKCNWKLSRVPQYRDAIRRIQAQ--GIRVNA 352

Query: 334 DFIVGFPGETDDDFRATMDLV-DKIGYAQAFSFKYSPRLGTP 374
            F++G  G+T   F   +D V + + +        +P  GTP
Sbjct: 353 CFVLGLDGQTTRVFDQVLDFVAEALPFD-VQVTVPTPFPGTP 393


>gi|261403314|ref|YP_003247538.1| Radical SAM domain protein [Methanocaldococcus vulcanius M7]
 gi|261370307|gb|ACX73056.1| Radical SAM domain protein [Methanocaldococcus vulcanius M7]
          Length = 459

 Score = 67.3 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 69/388 (17%), Positives = 140/388 (36%), Gaps = 55/388 (14%)

Query: 71  HIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAG-CVAQAEGEEILRRSPIVNVVVG 129
            I  +     ++ L  I++LK    K   + + V  G C+ Q      L +     +V  
Sbjct: 71  FITLQYENDYFNALNIIKSLK----KTNPNAIFVAGGPCIMQNFFP--LEKYFDAFIVGE 124

Query: 130 PQTYYRLPELLERARF---------GKRVVDTDYSVEDKFERLSIV-DGGYNRKRGVTAF 179
            +    + EL+ R              + +   Y  +   +   I          G +  
Sbjct: 125 IEGTNVMAELVNRNFNLNGVYSKYTKPKKIKRIYPKKLTIDDYPIYQPTSEESAYGKSFL 184

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLID-NGVCEITLLGQNVNAWRGK 238
           L I  GC + C FC+          R L  ++  A + I  N V ++ L+  +V  ++  
Sbjct: 185 LEIGRGCPRRCKFCLARAIYYPPRFRKLEDLMYLAEEGIKVNKVNKVALISPSVGDYKY- 243

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
                     +L   L E    V++  ++     +++ L+K        +  L +  ++G
Sbjct: 244 --------IVELCNFLDE--KGVQVSPSSLRADTITEELMKVLK-----LKTLTIAPEAG 288

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK-- 356
           S+R+ + + +  +  +    +D  +    +  I   F+VG P ET++D    ++L  K  
Sbjct: 289 SERLREFIKKDISEEDIMNAVDIAKKFNVE-KIKLYFMVGLPTETEEDVEEIINLSKKIK 347

Query: 357 --IGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQI- 413
             I   +       P+  T        +      +++  ++KKL+++ +      VG   
Sbjct: 348 NQIKKVEVSINPMIPKPHTDFEMEPFDLSS---KQKVKYIEKKLKKENIK-----VGTEN 399

Query: 414 ------IEVLIEKHGKEKGKLVGRSPWL 435
                   VL  +  K  G  +GRS   
Sbjct: 400 FNAMVCQCVLA-RGDKIIGDYLGRSKNY 426


>gi|229159943|ref|ZP_04287949.1| Oxygen-independent coproporphyrinogen III oxidase 2 [Bacillus
           cereus R309803]
 gi|228623535|gb|EEK80355.1| Oxygen-independent coproporphyrinogen III oxidase 2 [Bacillus
           cereus R309803]
          Length = 496

 Score = 67.3 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 47/245 (19%), Positives = 80/245 (32%), Gaps = 9/245 (3%)

Query: 129 GPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
           G        EL E     +  ++    + D   +L++V   Y  K  V+ ++ I   C  
Sbjct: 127 GMSKEEAHQELRESYLIHEEKIELLQRIVD--CQLAVVPDLYRLKEEVSIYIGIPF-CPT 183

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT-- 246
            C +C  P         S+   +      +      +   G  V      G      T  
Sbjct: 184 KCAYCTFPAYAINGRQGSVDSFLGGLHYEVREIGKFLKEKGVTVTTIYYGGGTPTSITAE 243

Query: 247 -FSDLLYSLSEIKGLVR--LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
               L   + E    V+     T    R  +    K        +  + +  QS     L
Sbjct: 244 EMDMLYEEMYEAFPDVKNVREVTVEAGRPDTITPAKLEVLNKWNIDRISINPQSYHQETL 303

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           K++ R HT  E  +     R +  +  I+ D I+G PGE  + F+ T+D  +K+      
Sbjct: 304 KAIGRHHTVEETIEKYHLAREMGMN-NINMDLIIGLPGEGLEIFKHTLDETEKLMPESLT 362

Query: 364 SFKYS 368
               S
Sbjct: 363 VHTLS 367


>gi|282897021|ref|ZP_06305023.1| Radical SAM [Raphidiopsis brookii D9]
 gi|281197673|gb|EFA72567.1| Radical SAM [Raphidiopsis brookii D9]
          Length = 531

 Score = 67.3 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 47/305 (15%), Positives = 101/305 (33%), Gaps = 36/305 (11%)

Query: 79  KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVV---------- 128
           +++  LG IR       K       VV G       E++ +  P   +V           
Sbjct: 125 ELWRNLGLIRGGMKRAKKYQAQARAVVGGGAVSVFYEQLGKSLPEGTIVSVGEGETLLTK 184

Query: 129 ---GPQTYYRLPELLERARFGKRVVDTDYSVEDK-------FERLSIVDGGYNRKRGVTA 178
              G +       ++ +    +R++    +  +K        E +      Y + +    
Sbjct: 185 YLKGEEFRDERCYVVGQNTPRQRLIHEQPTPLEKTACNYDYIETVWPEFNYYLQDKDFYI 244

Query: 179 FLTIQEGCDKFCTFCVVPYTRGIEISR-SLSQVVDEARKLIDNGVCEITLL-GQNVNAWR 236
            +  + GC   C +CV     G ++      +VV E R+L + GV        Q + A +
Sbjct: 245 GVQTKRGCPHNCCYCVYTVVEGKQVRINPADEVVAEIRQLYERGVRNFWFTDAQFIPARK 304

Query: 237 GKGLDGEKCTFSDLLYSLSEI--KGLVRLRY-TTSHPRDMSDCLIKAHGDLDVLMPYLHL 293
                       D +  L +I   G+  + +       +++  L +        M Y  +
Sbjct: 305 YID---------DAIELLGKIVDSGMTGIHWAAYIRADNLTPELCQLMAKTG--MNYFEI 353

Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
            + SGS  +++ M   +      Q    ++    +  +S ++      E  +  R T+  
Sbjct: 354 GITSGSQELVRKMRMGYNLRTVLQNCRDLKLAGFNDLVSVNYSFNVIDENFETIRQTIAY 413

Query: 354 VDKIG 358
             ++ 
Sbjct: 414 HRELE 418


>gi|94969349|ref|YP_591397.1| radical SAM family Fe-S protein [Candidatus Koribacter versatilis
           Ellin345]
 gi|94551399|gb|ABF41323.1| Fe-S protein, radical SAM family [Candidatus Koribacter versatilis
           Ellin345]
          Length = 523

 Score = 67.3 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 49/342 (14%), Positives = 99/342 (28%), Gaps = 36/342 (10%)

Query: 58  SMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEI 117
               AD+++ +  HI         + +  I    +S  K        V+GC  +   E  
Sbjct: 71  DYRWADVVMTSGMHI-------QRNQINAINRRAHSFGKVTVIGGPSVSGC-PEHYPE-- 120

Query: 118 LRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT 177
                 V  +            +  AR  ++V           +  +         +   
Sbjct: 121 -FDYLHVGELGDATDTLIQLLEVSVARPHEQVRFETKERLPLADFPTPAYDMAAMDKYFL 179

Query: 178 AFLTIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNG-VCEITLLGQNVNAW 235
           A +    GC   C FC +P   G     ++  Q++ E   ++  G +  +  +  N    
Sbjct: 180 ANVQFSSGCPYRCEFCDIPELYGRNPRLKTPQQILKELDAIVAGGAIGAVYFVDDNFV-- 237

Query: 236 RGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP----RDMSDCLIKAHGDLDVLMPYL 291
                 G +    +LL  L E +         +         S  L+    + D     +
Sbjct: 238 ------GNRKAALELLPHLVEWQKKNNYPVEFACEATLNIVKSPDLLALMREAD--FWTI 289

Query: 292 HLPVQSGSDRILKSMNRRH-TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
            + +++     LK +++ H       + I  + S    I + S  I+G   +T +     
Sbjct: 290 FVGIETPDPAALKLISKDHNNTVPVLEAIQTLNSF--GIEVVSGIIMGLDSDTVETGERI 347

Query: 351 MDLVDKIGYAQAFSFKYSPRLGTP------GSNMLEQVDENV 386
           +  V +                TP       +  L       
Sbjct: 348 LKFVAESQIPVLTINLLEALPRTPLYRRLQAAGRLNDAPGRE 389


>gi|167631057|ref|YP_001681556.1| radical sam family protein [Heliobacterium modesticaldum Ice1]
 gi|167593797|gb|ABZ85545.1| radical sam family protein [Heliobacterium modesticaldum Ice1]
          Length = 323

 Score = 67.3 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 39/200 (19%), Positives = 73/200 (36%), Gaps = 9/200 (4%)

Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR-GKGLDGEKCT 246
             C FC  P   G         + D+ R+ +   +      G+ +  ++      G+   
Sbjct: 53  GGCVFCC-PQGSGACAGDPSEAIRDQFRQ-VRERLRSKWSQGKYIAYFQAFSNTYGDPRL 110

Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLD-VLMPYLHLPVQSGSDRILKS 305
              L       +G+V L  +T  P  + D ++    +L+     ++ L +QS  D  L+ 
Sbjct: 111 LRRLYEEALAQEGVVGLSLST-RPDCLPDDVLDLLVELNGRTYLWVELGLQSIHDDTLRR 169

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           +NR H A  +   ++++R+    I +    I G PGE ++    T   V  +        
Sbjct: 170 INRGHDAATFYAALEKLRAR--GIRVCVHIIYGLPGEGEEAMLETGRAVAAMDVQGVKFH 227

Query: 366 KYSPRLGTPGSNML--EQVD 383
                 GT  +      QV 
Sbjct: 228 SLHVMKGTRLAEWHAAGQVP 247


>gi|292669404|ref|ZP_06602830.1| oxygen-independent coproporphyrinogen III oxidase 2 [Selenomonas
           noxia ATCC 43541]
 gi|292648965|gb|EFF66937.1| oxygen-independent coproporphyrinogen III oxidase 2 [Selenomonas
           noxia ATCC 43541]
          Length = 503

 Score = 67.3 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 46/193 (23%), Positives = 78/193 (40%), Gaps = 9/193 (4%)

Query: 173 KRGVTAFLTIQEGCDKFCTFCVVP--YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQ 230
           +R V+ ++ I   C   C +C  P     G E  R+   V+     +    V  + L  +
Sbjct: 170 ERTVSIYVGIPF-CLSRCLYCSFPSNLLPGREKLRTFMDVLARDLSVAAEDVRTLGLTVE 228

Query: 231 NVNAWRGKGLDGEKCTFSDLLYSL-SEIKGLVRLRYTTS--HPRDMSDCLIKAHGDLDVL 287
           ++    G         F+++L  + +   GL    +T     P  MS   I         
Sbjct: 229 SIYIGGGTPTSLPNDFFAEMLKMVYNAFYGLSVAEFTVEAGRPDSMSAEKIACMKSY--A 286

Query: 288 MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDF 347
           +  + +  QS     L  + R HT  +  +++  IR+   D+ I+ D I+G PGET +D 
Sbjct: 287 VTRVSVNPQSMRGETLVRIGRHHTPEDIVRMVREIRAAF-DVHINMDVILGLPGETAEDV 345

Query: 348 RATMDLVDKIGYA 360
           RATM  V  +   
Sbjct: 346 RATMAAVTALAPD 358


>gi|316932968|ref|YP_004107950.1| Radical SAM domain-containing protein [Rhodopseudomonas palustris
           DX-1]
 gi|315600682|gb|ADU43217.1| Radical SAM domain protein [Rhodopseudomonas palustris DX-1]
          Length = 528

 Score = 67.3 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 50/337 (14%), Positives = 114/337 (33%), Gaps = 40/337 (11%)

Query: 57  NSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEE 116
           +    AD + ++  HI+    +++     R             DL V + G    A  + 
Sbjct: 71  DDFAWADAVFVSGMHIQ---RQQMNDICNRAHAF---------DLPVALGGPSVSACPD- 117

Query: 117 ILRRSPIVNVVVGPQTYYRLPELLER-----ARFGKRVVDTDYSVEDKFERLSIVDGGYN 171
                P  + +   +      +L+ R      R  +++V T     D             
Sbjct: 118 ---YYPNFDYLHVGELGDATDQLIARLAHDVVRPKRQIVFTTEDRLDMALFPIPAYELAE 174

Query: 172 RKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVC-EITLLG 229
             + +   +    GC   C FC +P   G     ++  Q++ E  ++++ G+   +  + 
Sbjct: 175 CSKYLLGSIQYSSGCPYQCEFCDIPGLYGRNPRLKTPEQIITELDRMVECGIRGSVYFVD 234

Query: 230 QNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMS----DCLIKAHGDLD 285
            N          G +    DLL  L E +         +    ++      +++   +  
Sbjct: 235 DNFI--------GNRKAALDLLPHLVEWQKRTGFALQLACEATLNIAKRPEILELMRE-- 284

Query: 286 VLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV-RPDIAISSDFIVGFPGETD 344
                + + +++     LK+M++ H       I++ +R++    I + S  I+G   +T 
Sbjct: 285 AYFCTIFVGIETPDPTALKAMHKDHN--MMVPILEGVRTIGSYGIEVVSGIILGLDTDTP 342

Query: 345 DDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +     +  +D+                TP  + LE+
Sbjct: 343 ETGNFLLKFIDQSQIPLLTINLLQALPKTPLWDRLER 379


>gi|251771459|gb|EES52036.1| Radical SAM domain protein [Leptospirillum ferrodiazotrophum]
          Length = 525

 Score = 67.3 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 54/297 (18%), Positives = 97/297 (32%), Gaps = 26/297 (8%)

Query: 79  KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPI-VNVVVGPQTYYRLP 137
           K  +   +        ++      V+V G       E+I+R  P  V  VVG      + 
Sbjct: 132 KYRTEFHKKLRFIREGMRRAPKAQVMVGGGAFSVFAEQIIRLLPEGVIGVVGEGEEAMIK 191

Query: 138 ELLERARFGKRVVD-------------TDYSVEDKFE--RLSIVDGGYNRKRGVTAFLTI 182
            +  R    +R +                      F+   L  +  G++   G T  +  
Sbjct: 192 LIEGRPLDDERTIVRRGREIILGKKAGAVEIRRAPFDLSYLESIFPGHSLYHGKTVGIQT 251

Query: 183 QEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGL 240
           + GC   C+FC+  Y  G  +  R    V+DE R+  D  G+           A    G+
Sbjct: 252 KRGCPYGCSFCLYTYIEGKRVYYRDPEDVIDEIRQYRDRWGIRNFWFAD----AQFIPGV 307

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300
                  S L        G+    Y       +S  +     +    M  L + + SGS 
Sbjct: 308 KAVPECLSLLRAMKEADLGITWSGY--IRTSLISPEMASLMVESG--MGDLEVAITSGSQ 363

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
            IL S+          +    +++      I  ++ +  PGET +     ++  ++I
Sbjct: 364 EILDSLKMGFRLEGLMEGCRNLKNAGYRGKIILNYSLNAPGETPETLAQAVESYEEI 420


>gi|15837870|ref|NP_298558.1| lipoyl synthase [Xylella fastidiosa 9a5c]
 gi|32130444|sp|Q9PDW0|LIPA_XYLFA RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|9106256|gb|AAF84078.1|AE003961_2 lipoic acid synthetase [Xylella fastidiosa 9a5c]
          Length = 373

 Score = 67.3 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 35/210 (16%), Positives = 69/210 (32%), Gaps = 14/210 (6%)

Query: 161 ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN 220
           E  +  +       G   F+ + E C + C+FC V    G        + +  AR + + 
Sbjct: 82  EEAACPNIHECFSHGTATFMILGEVCTRRCSFCDV--AHGRPKPPDPEEPISLARTVAEM 139

Query: 221 GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD---MSDCL 277
           G+  + +   +    R    DG    F D + ++ +     R+   T   R    M   L
Sbjct: 140 GLKYVVVTSVD----RDDLRDGGAQHFVDCIAAIRQSAPQTRIEILTPDFRGKGRMDRAL 195

Query: 278 IKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIV 337
                    +  +    V +        +           ++ R ++  P +   S  ++
Sbjct: 196 DILAACPPDVFNHNVETVPALYPN----VRPGADYQWSLTLLKRFKAQHPQVPTKSGIML 251

Query: 338 GFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           G  GET D  +AT+  +           +Y
Sbjct: 252 GL-GETLDQVQATLRDLRAHDVDMVTIGQY 280


>gi|32471472|ref|NP_864465.1| methyltransferase [Rhodopirellula baltica SH 1]
 gi|32443313|emb|CAD72144.1| hypothetical methyltransferase [Rhodopirellula baltica SH 1]
          Length = 480

 Score = 67.3 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 52/344 (15%), Positives = 101/344 (29%), Gaps = 32/344 (9%)

Query: 55  RVNSMDDADLIVLNTCHI---REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQ 111
                + AD I+  T  +   R  A   +     R   +     +    +  V+ G  A 
Sbjct: 101 VTPECEVADQILSGTTSLNPPRVVAFSALTPSADRAARISRLVQRHN--VTTVIGGLHAT 158

Query: 112 AEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYN 171
           A  E      P  +VVV          LL     G                  +      
Sbjct: 159 ATPE---HCRPHFDVVVQGDGESTFANLLADVMEGTPAASYRADGSFSLADSPLPRWELL 215

Query: 172 RKRGVTAF-LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQ 230
            K     + +    GC   C+FC      G    +   +   E + + D        L  
Sbjct: 216 GKNSPPRYTIQSMRGCPWACSFCAASRMLGPARVKPDDRFEAELQAISDQQSRPWIELAD 275

Query: 231 NVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSH-PRDMSDCLIKAHGDLDVLMP 289
           +     G+               L  ++      +T S         L++   D      
Sbjct: 276 DNTFASGRDHGP----------MLESLQNHGARWFTESDWRIAKKPRLLQQIADSG--CR 323

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV-RPDIAISSDFIVGFPGETDDDFR 348
            + + ++S    + +         ++ ++++ + ++    I ++   IVG  GE+ +   
Sbjct: 324 QILIGLESS---VFRYPGMGAKNADWERMLEAVVAIQEAGIVVNGCLIVGADGESKESIT 380

Query: 349 ATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLL 392
              D +++    +      +P  GT     L Q      +ERLL
Sbjct: 381 RLGDFLEEAPMGEIQLTLQTPFPGTSLYKTLLQ------SERLL 418


>gi|332141206|ref|YP_004426944.1| hypothetical protein MADE_1009040 [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327551228|gb|AEA97946.1| hypothetical protein MADE_1009040 [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 791

 Score = 67.3 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 67/407 (16%), Positives = 126/407 (30%), Gaps = 66/407 (16%)

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           I+  +  + K      V V     +   +  +  +    ++           L++R    
Sbjct: 279 IQPPQKEKEKRKPWEKVYVKLPAFETVKDNKVLYAHTSRILHQETNPGCARALMQRHADR 338

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTA-------------FLTIQEGCDKFCTFC 193
              ++      +  E  ++ D  Y R                    + I  GC   CTFC
Sbjct: 339 HIWINPPAMPLETEEMDAVFDLPYQRVPHPVYGDAKIPAYDMIRFSINIMRGCYGGCTFC 398

Query: 194 VVPYTRGIEI-SRSLSQVVDEARKLIDN--GVCEIT--LLGQNVNAWR------------ 236
            +    G  I SRS   ++ E  ++ D   G   +   L G   N +R            
Sbjct: 399 SITEHEGRIIQSRSEDSIIREIEQIRDTVPGFTGVISDLGGPTANMYRLRCKSPKAEATC 458

Query: 237 ----------GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGD--L 284
                        +D +     DL     E+ G+ ++   +    D++    +   +  L
Sbjct: 459 RRPSCVYPSICAHMDTDHKPTIDLYRRARELPGIKKILIASGVRYDLAVEDPEYVKELAL 518

Query: 285 DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR--QIIDRI-RSVRPDIAISSDFIVGFPG 341
             +  YL +  +   D  L  M +      YR  ++ D+  +       +   FI   PG
Sbjct: 519 HHVGGYLKIAPEHTEDGPLSKMMKPGMGSYYRFKELFDKYSQEAGKKQYLIPYFIASHPG 578

Query: 342 ETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML--------------EQVDENVK 387
            TD+D  +    + +  +       + P      + M               E V    K
Sbjct: 579 TTDEDMLSLAIWLKENKFKLDQVQNFYPSPMATATTMYHTEVNSLRKVTKDSEDVPSA-K 637

Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPW 434
            E    L K +       N A + + ++    + G+E   L+GR P 
Sbjct: 638 GEIHRRLHKAMLRYHDPKNFAQIREALK----RMGRED--LIGRGPQ 678


>gi|78185602|ref|YP_378036.1| Elongator protein 3/MiaB/NifB [Synechococcus sp. CC9902]
 gi|78169896|gb|ABB26993.1| Elongator protein 3/MiaB/NifB [Synechococcus sp. CC9902]
          Length = 518

 Score = 67.3 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 44/259 (16%), Positives = 86/259 (33%), Gaps = 30/259 (11%)

Query: 88  RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVV-VGPQTYYRLPELLERARFG 146
           R LK +  +   +   V+ G       E++ R  P   +V VG         LL ++  G
Sbjct: 124 RGLKRA-CRHHPEARAVLGGGAVSVFYEQLSRSLPKGTIVSVGEGEPLLEKLLLGQSLEG 182

Query: 147 KRVVDTDYS-----VEDKFERLS-------------IVDGGYNRKRGVTAFLTIQEGCDK 188
           +R            + ++ E                     Y         +  + GC  
Sbjct: 183 ERCFQVGEPPRSGLIHEQPESRPKTACDYSYIASIWPQLDWYLEAGDFYVGVQTKRGCPH 242

Query: 189 FCTFCVVPYTRGIEISR-SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTF 247
            C +C+     G ++    + +VV E R+L D GV             R    D +    
Sbjct: 243 NCCYCIYTVVEGKQVRLNPVDEVVAEMRQLYDRGVRGFWFTDAQFIPARRYIEDAK---- 298

Query: 248 SDLLYSLSEIKGLVRLRY-TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306
            +LL ++ + +GL  +R+       ++   L +   +    M Y  + + SGS  +++ M
Sbjct: 299 -ELLRAI-KAEGLTGIRWAAYIRADNLDPELAQLMVETG--MSYFEIGITSGSQELVRKM 354

Query: 307 NRRHTAYEYRQIIDRIRSV 325
              +      +    +   
Sbjct: 355 RMGYNLRTVLESCRMLAEA 373


>gi|310779343|ref|YP_003967676.1| Radical SAM domain protein [Ilyobacter polytropus DSM 2926]
 gi|309748666|gb|ADO83328.1| Radical SAM domain protein [Ilyobacter polytropus DSM 2926]
          Length = 588

 Score = 67.3 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 56/331 (16%), Positives = 106/331 (32%), Gaps = 53/331 (16%)

Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
           PE+ +  +  KR +  D +  + +++  +        R   A + IQ GC + C FC   
Sbjct: 199 PEIHKGKKKIKRAIVRDLNKTEFYDKQIVPYMLIVHDR---AAVEIQRGCTRGCRFCQAG 255

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256
                   R+L   +    K ++                           +S +   L  
Sbjct: 256 MVYRPVRERTLENNMKLIEKTLEA-----------TGYSEVSLSSLSSSDYSKIGDLLGN 304

Query: 257 IKGL-----VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
           I+G      V +   +      S  + +                ++GS R+   +N+  T
Sbjct: 305 IQGKYGENNVGIGLPSLRMNPYSVKVAEQITSGKK--TGFTFAPEAGSQRLRDVINKGVT 362

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL----VDKIGYAQ------ 361
             E  +  +       D  +   F++G P ETD+D +   DL    V K           
Sbjct: 363 EKEILETAEAAVKAGWD-TLKFYFMIGLPFETDEDVKGIYDLVYKVVQKCRVHSKRLSIT 421

Query: 362 AFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKH 421
                + P+  TP      Q++      +   L++     +  F +  +          H
Sbjct: 422 VSVSNFVPKPHTP-FQWSRQMNFEEMDRKHTLLRELF--HRARFMNIKI----------H 468

Query: 422 GKEKGKLVGRSPWLQSVVLNSKNHNIGDIIK 452
            K K  L G         L+  +  IGD+++
Sbjct: 469 SKAKSYLEG--------FLSRGDEKIGDLVE 491


>gi|225376151|ref|ZP_03753372.1| hypothetical protein ROSEINA2194_01788 [Roseburia inulinivorans DSM
           16841]
 gi|225211978|gb|EEG94332.1| hypothetical protein ROSEINA2194_01788 [Roseburia inulinivorans DSM
           16841]
          Length = 444

 Score = 67.3 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 59/330 (17%), Positives = 115/330 (34%), Gaps = 66/330 (20%)

Query: 70  CHIREKAAEK------VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPI 123
           C I  +A +        +    R+  +          L++ +   + + +  +       
Sbjct: 94  CFIGGQAVKSIYFDILQWDTQNRLNIIIGEGEFIIPALVLGLCNQIPEEQKNQKFVYRVN 153

Query: 124 VNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQ 183
            +    P+    +   L+R   G  +VD  Y  ++                     +   
Sbjct: 154 KDSEYFPEDISNV--FLDRRYLGNEIVDNHYGEKEIA-------------------IITS 192

Query: 184 EGCDKFCTFCVVPYTRGIEIS---------RSLSQVVDEARKLIDN--GVCEITLLGQNV 232
            GC   C FC      G   S         R+   V+ E ++++     +  I +L  ++
Sbjct: 193 RGCAFDCAFC------GGARSLNKDVTTRIRTEESVIMEIKEILSTYPDIQSIRIL-DDL 245

Query: 233 NAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL-MPYL 291
               GK +D     FS         +G+V +     +        I+   DL       L
Sbjct: 246 FLRNGKSIDMANNIFSKFPQL--SWRGMVHVLSLIGN--------IEKVKDLHNGRCREL 295

Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351
            + ++SGS+R+ K +N+  ++ +   +   I      I +   FI GFP ET +DF+ T 
Sbjct: 296 FIGIESGSERMRKKINKLGSSDDVITVSKEILEN--GIDLKGYFIYGFPEETKEDFQKTY 353

Query: 352 DL---VDKIGYA-----QAFSFKYSPRLGT 373
           +L   + +I        +   F++ P  GT
Sbjct: 354 ELASKIKEISLKTPGTFRTSVFQFRPYHGT 383


>gi|283833542|ref|ZP_06353283.1| BchE/P-methylase family protein [Citrobacter youngae ATCC 29220]
 gi|291071212|gb|EFE09321.1| BchE/P-methylase family protein [Citrobacter youngae ATCC 29220]
          Length = 448

 Score = 67.3 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 52/312 (16%), Positives = 106/312 (33%), Gaps = 33/312 (10%)

Query: 88  RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147
           R  + +       + V++ G       +E  R     + +V  +      E+++  R   
Sbjct: 72  RAYQIASEYRRRGVPVIMGGFHVTLVPDEAAR---FADAIVIGEAESVWAEVIDDLR--H 126

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQ--EGCDKFCTFCVVPYTR-GIEIS 204
           R +   Y  +    R   VD    + +       I+   GC   C FC V          
Sbjct: 127 RTLKPRYQGQQTDLRQVKVDRSLFQGKRYLPIGLIETGRGCRFPCEFCAVQTFYQRRYRR 186

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE--IKGLVR 262
           R +  V+ E   ++         +  N          G      ++L +L++  ++ + +
Sbjct: 187 RDIDSVLSEL-NVLKAQKKLFFFVDDNFA--------GSLRESREVLPALAQANVRWVTQ 237

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE--YRQIID 320
           +    +H       L +A          + +  +S ++  L  MN+R    +  +   + 
Sbjct: 238 MSINAAHDEGFVQALARA------GCRGVLIGFESLNEENLLLMNKRVNTMKGGFSAALA 291

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
            +R  R  IA+   F+ G+  +T + F   ++   +     A     +P  GTP  + L 
Sbjct: 292 NLR--RNGIAVYGTFVFGYDHDTLESFSEAVEFAREQSMYIAAFNHMTPFPGTPLYSRL- 348

Query: 381 QVDENVKAERLL 392
              E  K  R  
Sbjct: 349 ---EAEKRLRFD 357


>gi|158522483|ref|YP_001530353.1| radical SAM domain-containing protein [Desulfococcus oleovorans
           Hxd3]
 gi|158511309|gb|ABW68276.1| Radical SAM domain protein [Desulfococcus oleovorans Hxd3]
          Length = 507

 Score = 67.3 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 49/319 (15%), Positives = 96/319 (30%), Gaps = 44/319 (13%)

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           +R L  +  +      +V  G  A A  +  L +SP+   ++G +    +  +++    G
Sbjct: 97  VRELIAAVRRAFPHAYLVAGGEHATAMADICLAQSPLDLCIMG-EGEETMAGVVQAVEEG 155

Query: 147 -------------------------KRVVDTDYSVEDKFERLSI--VDGGYNRKRGVTAF 179
                                     R+ +        + R+S            G T  
Sbjct: 156 LPLDSVPGVAFLDRTTGRIIETRRRPRIRNLSRLPRPAWHRVSPHVYRIYEGAATGPTMP 215

Query: 180 LTIQEGCDKFCTFCVVPYTRGI-EISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRG 237
           +    GC   C FC  P   G     R  + +VDE        G  E             
Sbjct: 216 MIGSRGCPFKCRFCAAPNMWGHCWKKREPADIVDEMEDYAKRFGTREFQFFDI------- 268

Query: 238 KGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQS 297
                +  T +     +     +            +   +             +   ++S
Sbjct: 269 SPFLSKPWTRALCQEIIDRGLKVAWQAPAGVRAEVIDQQMAALLVASGH--TRIQFALES 326

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
           GS  + K+MN++   + +   +     +   + +   FI+G+PGE   D R T   + ++
Sbjct: 327 GSPAVRKAMNKKIDIHRFEAGLTA--GLSSGMKVCVLFIIGYPGEALSDVRMTFRSIRRL 384

Query: 358 ---GYAQAFSFKYSPRLGT 373
              G  +     + P  GT
Sbjct: 385 AIKGVHEIAVSTFLPLPGT 403


>gi|170744135|ref|YP_001772790.1| radical SAM domain-containing protein [Methylobacterium sp. 4-46]
 gi|168198409|gb|ACA20356.1| Radical SAM domain protein [Methylobacterium sp. 4-46]
          Length = 527

 Score = 67.3 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 47/282 (16%), Positives = 94/282 (33%), Gaps = 16/282 (5%)

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           R+  L ++  + G    V++ G  A    EE+    P  +++V  +      ++      
Sbjct: 80  RMIALADAFRRRGRT--VMIGGSFATLTPEEMR---PHADILVTGEVEEIAAQIFSDIAA 134

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC-VVPYTRGIEIS 204
           G+     D    D           Y  +R  +  L    GC   C FC V+ Y    +  
Sbjct: 135 GRAGDRYDGGKADIRRSPVPRWDLYPVERASSGALQTTRGCPFSCEFCDVIQYQGRKQRH 194

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           + ++Q+V E   L   G  +I L+  N    R       K   +   ++       V   
Sbjct: 195 KDIAQIVAELDALYAAGFRQIFLVDDNFTVHR---AWARKVLDALTAWNAGHEADPVLFL 251

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
              S        L++     +  +  L + +++ +   L+   ++       Q ++   +
Sbjct: 252 TQASLDVARDPDLLE--RCHEAGIRILFVGIETVNKASLRETGKK---QNLLQPVESAIA 306

Query: 325 VR--PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
                 IA+ +  IVGF  ++   F       D     +   
Sbjct: 307 AILQKGIAVQAGIIVGFDHDSAGIFDQMRGFFDAAPIPELNI 348


>gi|91775292|ref|YP_545048.1| radical SAM family protein [Methylobacillus flagellatus KT]
 gi|91775436|ref|YP_545192.1| radical SAM family protein [Methylobacillus flagellatus KT]
 gi|91709279|gb|ABE49207.1| Radical SAM [Methylobacillus flagellatus KT]
 gi|91709423|gb|ABE49351.1| Radical SAM [Methylobacillus flagellatus KT]
          Length = 745

 Score = 67.3 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 46/264 (17%), Positives = 88/264 (33%), Gaps = 35/264 (13%)

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRG---VTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRS 206
           + DY  +  + R         R      +   + I  GC   CTFC +    G  I SRS
Sbjct: 359 EMDYVYDLTYARTPHPAYKGERIPAWEMIRFSVNIMRGCFGGCTFCSITEHEGRIIQSRS 418

Query: 207 LSQVVDEARKLIDN--GVCEIT--LLGQNVNAWR----------------------GKGL 240
            + ++ E  ++ D   G       L G   N +R                       + L
Sbjct: 419 EASILKELEEVRDKVEGFTGTISDLGGPTANMYRLACKSETIEKNCRKLSCVFPGICENL 478

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL--DVLMPYLHLPVQSG 298
           + +      L      I G+ R++  +    D++    +   +L    +  YL +  +  
Sbjct: 479 NTDHSHLIQLYRKARAIPGIKRIQIGSGLRYDLAVKSPEYVKELVQHHVGGYLKIAPEHS 538

Query: 299 SDRILKSMNRRHTAYE--YRQIIDRI-RSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
            + +L  M +        ++++ +R  R    +  +   FI   PG TD+D       + 
Sbjct: 539 EENVLSKMMKPAMTAYDEFKEMFERFSREAGKEQYLIPYFIAAHPGTTDEDMLNLALWLK 598

Query: 356 KIGYAQAFSFKYSPRLGTPGSNML 379
           K  +       ++P      + M 
Sbjct: 599 KYDFKLDQVQTFTPTPMAMATAMY 622


>gi|298490980|ref|YP_003721157.1| radical SAM domain-containing protein ['Nostoc azollae' 0708]
 gi|298232898|gb|ADI64034.1| Radical SAM domain protein ['Nostoc azollae' 0708]
          Length = 523

 Score = 67.3 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 43/282 (15%), Positives = 87/282 (30%), Gaps = 24/282 (8%)

Query: 101 LLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKF 160
             V V G  A +  E +L      + ++  +    +P  LE    G+       + +   
Sbjct: 93  KKVAVGGPFATSVPEFVLEA--GADYLILDEGEITIPMFLEALEKGEEKGIFRATEKPDV 150

Query: 161 ERLSIVDGGYNRKRGVTAF-LTIQEGCDKFCTFC-VVPYTRGIEISRSLSQVVDEARKLI 218
            +  +            A  +    GC   C FC ++        +++  Q++ E   L 
Sbjct: 151 TQTPLPRFDLLDLNAYIAMTVQFSRGCPFQCEFCDIITLFGRKPRTKTPEQILVELEVLY 210

Query: 219 DNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD------ 272
             G      +  +          G K      L  L  I  + +  Y  +   +      
Sbjct: 211 QMGWWRYVFIVDD-------NFIGNKRNAKIFLREL--IPWMEKRNYPFALLTEASLNLA 261

Query: 273 MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR-HTAYEYRQIIDRIRSVRPDIAI 331
             D L++       +   + + +++     L   N+  +T     +   +I      + I
Sbjct: 262 EDDELLELMVKAGFV--QVFMGIETPDVESLVGANKEQNTRKSLVESCHKITKA--GLQI 317

Query: 332 SSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
            S FI+GF  E     +   + V++    QA          T
Sbjct: 318 MSGFILGFDHEKPGAGKRIQEFVEETNIPQAHLNLLQALPNT 359


>gi|119872191|ref|YP_930198.1| radical SAM domain-containing protein [Pyrobaculum islandicum DSM
           4184]
 gi|119673599|gb|ABL87855.1| Radical SAM domain protein [Pyrobaculum islandicum DSM 4184]
          Length = 565

 Score = 67.3 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 66/373 (17%), Positives = 120/373 (32%), Gaps = 41/373 (10%)

Query: 124 VNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQ 183
           V++V+    Y  L E L +    +   D     E  +    IV    N  R +   L   
Sbjct: 137 VDLVI----YRLLKEGLGKVSPSETHRDFKLVDEFAWRGAKIVIQHPNYGRNLIVELETY 192

Query: 184 EGCDKF----CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
             C ++    C+FC      G  ++RS+  +V E   L   GV    L  Q         
Sbjct: 193 RSCPRYLSGGCSFCTT-VAYGPVVTRSIEGIVREVEALYKAGVVHFRLGRQADFYTYMAR 251

Query: 240 LDGE----KCTFSDLLYSLSEI----KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL 291
             G     +   S +   L  I      L  L     +P  ++    ++     +L+ Y 
Sbjct: 252 DTGREEFPRPNPSAIEKLLVGIRNAAPDLKTLHIDNVNPGTVARWKAESIEITKLLVKYG 311

Query: 292 H------LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV--------RPDIAISSDFIV 337
                  + +++   R++K  N +    E    I+              P +    +F+ 
Sbjct: 312 TPGNVAAMGIETADPRVVKINNLKVYPEEALDAIEIFTKYGSERGYNGMPYLLAGVNFVA 371

Query: 338 GFPGETDDDFRATMDLVDKI-----GYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLL 392
           G PGET + +R  ++ + +I        +    +      +    M  +V   ++  R  
Sbjct: 372 GLPGETAETYRLNIEFLKQILERGLLVRRVNIRQVLVFPTSRLWPMARKVMYKLRQHRKY 431

Query: 393 CLQ--KKLREQQVSFNDACV---GQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNI 447
            LQ  K  RE         +   G I+  +  +     G    +      +V       +
Sbjct: 432 FLQFKKWTREVFDREMLRRIVPRGTILREVYTEVHYHGGTYARQIGSYPLLVYIPTRLQL 491

Query: 448 GDIIKVRITDVKI 460
           G  I V + D   
Sbjct: 492 GRFINVVVIDHGS 504


>gi|312142833|ref|YP_003994279.1| Radical SAM domain protein [Halanaerobium sp. 'sapolanicus']
 gi|311903484|gb|ADQ13925.1| Radical SAM domain protein [Halanaerobium sp. 'sapolanicus']
          Length = 545

 Score = 67.3 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 34/209 (16%), Positives = 67/209 (32%), Gaps = 22/209 (10%)

Query: 170 YNRKRGVTAFLTIQEGCDK--FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITL 227
           +     + A L    GC +   C FC     + I  SRS  ++  E + + + GV    L
Sbjct: 172 HPNYPHLLAELETFRGCPRPKHCAFCSE-RLKKISYSRSPEEISREVKAMAEEGVHHYRL 230

Query: 228 LGQNVNAWRG-----KGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSH-------PRDMSD 275
             Q      G        +       DL   + +    +++ +  +          + + 
Sbjct: 231 GAQTDILLYGAELKNGSFNLNPAQIKDLYQGIRKADPQLKVLHMDNMNPAQIAKNPETAA 290

Query: 276 CLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV-------RPD 328
            +I+     +         ++S    +L   N   T  E    I  +  +        P 
Sbjct: 291 EIIETISSYNTPGDTAAFGLESADPVVLNKNNIDSTVEENYFAIKMLNEIGGQREEGIPK 350

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKI 357
           +    +FI G  GE++  F      + K+
Sbjct: 351 LLPGINFIHGLIGESEKTFDHNYQFLKKL 379


>gi|307353536|ref|YP_003894587.1| Radical SAM domain-containing protein [Methanoplanus petrolearius
           DSM 11571]
 gi|307156769|gb|ADN36149.1| Radical SAM domain protein [Methanoplanus petrolearius DSM 11571]
          Length = 490

 Score = 67.3 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 36/232 (15%), Positives = 78/232 (33%), Gaps = 28/232 (12%)

Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI--EISRSL 207
           V  D    D +   +        KRG  A +    GC   C +C +    G      RS 
Sbjct: 191 VAWDLLPMDIYRAHNWHCFSNLNKRGHYAVIYTSLGCPFNCNYCNIHALYGKPGIRFRSP 250

Query: 208 SQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR-- 264
            +V++E   L+    +  + ++ +                F      + ++  L+  R  
Sbjct: 251 EKVIEEIDFLVKKYQIENLKIIDE---------------LFVLNEKRVKKLCDLIIDREY 295

Query: 265 ----YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
               +  +    +++ L        +   +L   ++S S  +   + +R    +  + I+
Sbjct: 296 NLNIWAYARVDTINESLANKMKSAGI--NWLAFGIESASKDVRDGVTKRFDQNKIEKAIE 353

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
             +     I I  +FI G P + +   + T+DL  ++       +      G
Sbjct: 354 IAQKA--GIFIMGNFIFGLPDDNNQTMQETLDLAKELNLEYINFYTAMAYPG 403


>gi|154505864|ref|ZP_02042602.1| hypothetical protein RUMGNA_03406 [Ruminococcus gnavus ATCC 29149]
 gi|153793882|gb|EDN76302.1| hypothetical protein RUMGNA_03406 [Ruminococcus gnavus ATCC 29149]
          Length = 476

 Score = 67.3 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 35/191 (18%), Positives = 65/191 (34%), Gaps = 21/191 (10%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQN-----VNAWRGKGL 240
           C   C++C          S  L++  D     +     EI  LG+      +N     G 
Sbjct: 161 CPSICSYCSFS-------SSPLAEWKDRVDDYLKALCQEIRALGERAEERKLNTIYIGGG 213

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD------MSDCLIKAHGDLDVLMPYLHLP 294
                    L   L  I+      Y      +      ++   ++        +  + + 
Sbjct: 214 TPTTLEAEQLFELLDTIQKSFSFEYLQEFTIEAGRPDSITREKLEVMRRFP--VTRISVN 271

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
            Q+   + L  + R+HT  + + I    R +  D  I+ D I G PGET +D R T+  +
Sbjct: 272 PQTMQQKTLDLVGRKHTVQDVKDIFHAARELGFD-NINMDLIAGLPGETAEDMRDTLCQI 330

Query: 355 DKIGYAQAFSF 365
           +++        
Sbjct: 331 EELSPDSLTVH 341


>gi|78067699|ref|YP_370468.1| lipoyl synthase [Burkholderia sp. 383]
 gi|77968444|gb|ABB09824.1| Lipoate synthase [Burkholderia sp. 383]
          Length = 330

 Score = 67.3 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 79/221 (35%), Gaps = 12/221 (5%)

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
           + +  ++++    E  S  + G    +G   F+ + + C + C FC V + R   +    
Sbjct: 65  KTILREHNLHTVCEEASCPNIGECFGKGTATFMIMGDKCTRRCPFCDVGHGRPDPL--DP 122

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
            +  + AR +    +  + +   +    R    DG    F + +  + E     R+   T
Sbjct: 123 DEPKNLARTIGALKLKYVVITSVD----RDDLRDGGAGHFVECIREVREQSPETRIEILT 178

Query: 268 SHPRDMSDCLIKAH-GDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
              R   D  I         +M +    V     R+ K            +++   +++ 
Sbjct: 179 PDFRGRLDRAISILNAAPPDVMNHNLETV----PRLYKEARPGSDYAHSLKLLKDFKALH 234

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           PD+A  S  +VG  GET+++    M  +           +Y
Sbjct: 235 PDVATKSGLMVGL-GETEEEILQVMRDLRAHDVDMLTIGQY 274


>gi|320100689|ref|YP_004176281.1| Radical SAM domain-containing protein [Desulfurococcus mucosus DSM
           2162]
 gi|319753041|gb|ADV64799.1| Radical SAM domain protein [Desulfurococcus mucosus DSM 2162]
          Length = 527

 Score = 67.3 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 70/345 (20%), Positives = 126/345 (36%), Gaps = 45/345 (13%)

Query: 165 IVDGGYNRKRGVTAFLTIQEGCDK----FCTFCVVPYTRGIEISRSLSQVVDEARKLIDN 220
           IV    N  R +   +    GC +     C+FC+ P   G  I R L  +V+EA  L   
Sbjct: 178 IVLQHPNYGRNLIVEVETYRGCSRWLTGGCSFCIEPR-YGRPIMRGLKGIVEEAEALYSL 236

Query: 221 GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI--------KGLVRLRYTTSHPRD 272
           GV  I L  Q           G +        +L ++         GLV L     +P  
Sbjct: 237 GVRHIRLGRQPDILAYMSEDTGREEFPRPNPEALEKLFHGIRSVAPGLVTLHIDNVNPGT 296

Query: 273 MSDCLIKAHGDLDVLMPY------LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV- 325
           +   + ++   L  ++ Y        L ++S  ++++K+ N +    E  + I  +  V 
Sbjct: 297 IVSHVDESVKALKTIVKYHTPGDVAALGIESFDEKVVKANNLKVGPEEALEAIRIVNRVG 356

Query: 326 -------RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR-----LGT 373
                   P +    + I G PGE+ + +R  ++ + +I        + + R       T
Sbjct: 357 GLRGWNGMPHLLPGVNLIYGLPGESRETYRVNLEYLTRIMKEGLMVRRLNIRRVAVLENT 416

Query: 374 PGSNMLEQVDENVKA-ERLLCLQKKLREQQVSFNDACVGQIIE-------VLIEKHGKEK 425
           P      +V+  ++  E L  L +   +    F+ A + +I+        ++ EKH    
Sbjct: 417 PLWLKRSEVEYLLRKHEGLYRLHRV--KVMRLFDKAMLKRILPPGTLLYGLIAEKHVA-- 472

Query: 426 GKLVGRSPWLQSVVLNSKNHNIG-DIIKVRITDVKISTLYGELVV 469
           G  + R P    V +  K        I  R+      ++ GE V 
Sbjct: 473 GYTMARFPGSYPVAVKVKGLIPVWSTITARVKGYSAKSVVGEAVA 517


>gi|126656880|ref|ZP_01728058.1| hypothetical protein CY0110_01839 [Cyanothece sp. CCY0110]
 gi|126621718|gb|EAZ92427.1| hypothetical protein CY0110_01839 [Cyanothece sp. CCY0110]
          Length = 527

 Score = 67.3 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 52/332 (15%), Positives = 105/332 (31%), Gaps = 32/332 (9%)

Query: 57  NSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEE 116
              D A++++ +   +++         L +I+  K           V V G  A +   E
Sbjct: 58  EEWDWAEIVIFSAMIVQKT------DLLTQIKEAKLRGK------CVAVGGPYATSVPSE 105

Query: 117 ILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGV 176
           +       + +V  +    LP  +E  + G+         +       I           
Sbjct: 106 VQEA--GADFLVLDEGEITLPMFVEALQRGETQGTIRTEEKPDVTSTPIPRYDLLELDAY 163

Query: 177 -TAFLTIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVCEITLLGQNVNA 234
            +  +    GC   C FC +    G +  +++ +Q++ E   L + G      +  +   
Sbjct: 164 DSMSVQFSRGCPFQCEFCDIIILYGRKPRTKTPTQLLKELDYLYELGWRRGVFMVDD--- 220

Query: 235 WRGKGLDGEKCTFSDLLYSLSEIKGL----VRLRYTTSHPRDMSDCLIKAHGDLDVLMPY 290
                  G K     LL  L   +       R     S        L++   + +     
Sbjct: 221 ----NFIGNKRNVKLLLKELKIWQKDHQYPFRFNTEASVDLAQDLELMELMVESN--FDA 274

Query: 291 LHLPVQSGSDRILKSMNRR-HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           + L +++  +  LK   +  +T       ID +  +R  +   + FI+GF GE       
Sbjct: 275 VFLGIETPDEESLKLTKKFQNTRDSLTDTIDIL--IRAGLRPMAGFIIGFDGEKTGAATR 332

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
            +  V+      A          T   + LE+
Sbjct: 333 IIRFVENAAIPTAMFGMLQALPHTALWHRLEK 364


>gi|20807915|ref|NP_623086.1| RNA polymerase II complex ELP3 subunit [Thermoanaerobacter
           tengcongensis MB4]
 gi|20516483|gb|AAM24690.1| ELP3 component of the RNA polymerase II complex, consists of an
           N-terminal BioB/LipA-like domain and a C-terminal
           histone acetyltransferase domain (only BioB/LipA-like
           domain in Thermotoga) [Thermoanaerobacter tengcongensis
           MB4]
          Length = 354

 Score = 67.3 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 35/211 (16%), Positives = 79/211 (37%), Gaps = 5/211 (2%)

Query: 171 NRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQ 230
            RK  +        GC   C FC      G +   ++ +V++     +   + E + +  
Sbjct: 2   KRKMYIIPIFIPHWGCSFKCVFCNQNLITGQKKDVTVEEVIETIESHL-KTIPEGSEVEV 60

Query: 231 NVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY 290
           +       G+  EK      +      +G ++    ++ P  +++ +++     D  +  
Sbjct: 61  SFFGGSFTGIPIEKQNLYLSIAREYLKRGQIQGIRLSTRPDYITEEILENLKKHD--VSV 118

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
           + L VQS  D +L+   R HT+ +    ++ IR    D  +    ++G PG+T++    T
Sbjct: 119 IELGVQSMEDDVLEKSRRGHTSEDVVNAVNLIRRY--DFKLGLQLMIGLPGDTEEKSLNT 176

Query: 351 MDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
              +  +       +       T    M ++
Sbjct: 177 AHKIVSLKPDFVRIYPTLVIRNTYLEKMYKE 207


>gi|325519258|gb|EGC98705.1| lipoyl synthase [Burkholderia sp. TJI49]
          Length = 331

 Score = 67.3 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 79/221 (35%), Gaps = 12/221 (5%)

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
           + +  ++++    E  S  + G    +G   F+ + + C + C FC V + R   +    
Sbjct: 66  KTILREHNLHTVCEEASCPNIGECFGKGTATFMIMGDKCTRRCPFCDVGHGRPDPL--DA 123

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
            +  + AR +    +  + +   +    R    DG    F + +  + E     R+   T
Sbjct: 124 DEPKNLARTIAALKLKYVVITSVD----RDDLRDGGAAHFVECIREVREQSPETRIEILT 179

Query: 268 SHPRDMSDCLIKAH-GDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
              R   D  I         +M +    V     R+ K            +++   +++ 
Sbjct: 180 PDFRGRLDRAISILNAAPPDVMNHNLETV----PRLYKEARPGSDYAHSLKLLKDFKALH 235

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           PD+A  S  +VG  GET+++    M  +           +Y
Sbjct: 236 PDVATKSGLMVGL-GETEEEILQVMRDLRAHDVDMLTIGQY 275


>gi|78224132|ref|YP_385879.1| hypothetical protein Gmet_2936 [Geobacter metallireducens GS-15]
 gi|78195387|gb|ABB33154.1| conserved hypothetical protein [Geobacter metallireducens GS-15]
          Length = 319

 Score = 67.3 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 30/111 (27%), Positives = 48/111 (43%), Gaps = 4/111 (3%)

Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330
            D +  L+        +   + L +QS  D+IL+ + R HT  EY + + RI      I 
Sbjct: 132 SDEALDLLADLAKRHYVC--IELGLQSMDDKILQQIGRGHTLTEYLEAVARIEGR--GIE 187

Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           + +  I GFPGET D F  T D++  +        +     GT  + +  Q
Sbjct: 188 LCTHLIYGFPGETRDGFLRTADMMAGLPVNSVKIHQLHAVKGTRLAELYHQ 238


>gi|222054339|ref|YP_002536701.1| radical SAM protein [Geobacter sp. FRC-32]
 gi|221563628|gb|ACM19600.1| Radical SAM domain protein [Geobacter sp. FRC-32]
          Length = 827

 Score = 67.3 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 51/264 (19%), Positives = 105/264 (39%), Gaps = 27/264 (10%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGK 238
           + I  GC + C FC   Y       R+ +QV+++  + + N G  EI+LL  +       
Sbjct: 255 MEIARGCTRGCRFCQAGYIYRPLRERTPAQVMEKIEETLRNTGYDEISLLSLSA------ 308

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY-LHLPVQS 297
              G+    + LL  L       R+  +    R  S    +   +++ +      L  ++
Sbjct: 309 ---GDYGCLTPLLQKLMHRYAQERIAVSLPSLRVGSLTP-EMVAEINKVRKTGFTLAPEA 364

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
           GSDR+ + +N+  T  +      ++      + I   F++G P ET +D     +L  ++
Sbjct: 365 GSDRLRQVINKGITEPDLLDTAYQVYGAGWRL-IKLYFMIGLPTETMEDVLGIAELARQV 423

Query: 358 GY----------AQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFND 407
            Y                 + P+  TP     +Q+      E+   L+++L+++++  N 
Sbjct: 424 KYQGKRAGQGGEVNVAVSSFVPKANTP-FQWEQQISYEEILEKQQFLRQELKKRKL--NL 480

Query: 408 ACVGQIIEVLIEKHGKEKGKLVGR 431
                 + V+ E       +L+G+
Sbjct: 481 KWHDAPLTVM-EGVFARGDRLLGK 503


>gi|238916676|ref|YP_002930193.1| oxygen-independent coproporphyrinogen III oxidase [Eubacterium
           eligens ATCC 27750]
 gi|238872036|gb|ACR71746.1| oxygen-independent coproporphyrinogen III oxidase [Eubacterium
           eligens ATCC 27750]
          Length = 385

 Score = 67.3 bits (163), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 39/236 (16%), Positives = 82/236 (34%), Gaps = 37/236 (15%)

Query: 186 CDKFCTFC---------VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR 236
           C   C +C          V Y     +   ++++ + A + + + +  I   G       
Sbjct: 17  CVHKCIYCDFLSAPAGDAVKYAYTRAL---INEIRNTADRQVKDKITSIFFGG------- 66

Query: 237 GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY------ 290
                G      D    +++I   VR  +  S   +++        +   L  Y      
Sbjct: 67  -----GTPSVLPDGC--IADILSAVRDCFDISDDAEITMECNPGTVNESRLSEYRAAGVN 119

Query: 291 -LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
            L   +QS  +  LK + R HT  ++ +     R    +  I+ D +   PG+T+     
Sbjct: 120 RLSFGLQSADNNELKMLGRIHTFEQFEESFRLARDAGFN-NINVDLMSAIPGQTEATLEN 178

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ---VDENVKAERLLCLQKKLREQQ 402
           T D V  +       +      GT  ++ +++   V +  +  R+  + K++ E  
Sbjct: 179 TFDKVMALQPEHISVYSLILEEGTYLADNIDKFPPVPDEEEDRRMYHITKQILENA 234


>gi|119487767|ref|ZP_01621276.1| hypothetical protein L8106_29835 [Lyngbya sp. PCC 8106]
 gi|119455600|gb|EAW36737.1| hypothetical protein L8106_29835 [Lyngbya sp. PCC 8106]
          Length = 528

 Score = 67.3 bits (163), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 60/260 (23%), Positives = 105/260 (40%), Gaps = 27/260 (10%)

Query: 179 FLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK 238
            + +   C + C FC+  Y      + SL   +  A +        I LLG +V      
Sbjct: 208 MVEVVRSCPEMCRFCLASYLTLPFRTASLETSLIPAIEQGLTVTKRIGLLGASVTQH--- 264

Query: 239 GLDGEKCTFSDLLYSLSEIK-GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQS 297
                   F++LL  LS+ K   VRL   +     ++  L +     D     L + ++S
Sbjct: 265 ------PEFNELLDYLSQPKYDDVRLSIASVRTNTVTVQLAETLAKRDT--KSLTIAIES 316

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPD--IAISSDFIVGFPGETDDDFRATMDLVD 355
           GS+ + K +N++    E  +II  + + +     A+    +VG PGE  +D  AT+ L+ 
Sbjct: 317 GSENLRKIINKK---LENEEIIQAVVNAKAGGLKALKLYGMVGIPGEYPEDVEATLALMK 373

Query: 356 KIGYA------QAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFN-DA 408
           ++  A            + P+  TP         E  K  RL  L+K LR+  + F  ++
Sbjct: 374 QLKKAAPGLKLTLGCSTFVPKSHTP-FQWFGVNPEAEK--RLKYLEKNLRKNGIEFRPES 430

Query: 409 CVGQIIEVLIEKHGKEKGKL 428
               +I+ LI +  +    L
Sbjct: 431 YKWSVIQALISRGDRRVSHL 450


>gi|161523597|ref|YP_001578609.1| lipoyl synthase [Burkholderia multivorans ATCC 17616]
 gi|189351634|ref|YP_001947262.1| lipoyl synthase [Burkholderia multivorans ATCC 17616]
 gi|160341026|gb|ABX14112.1| lipoic acid synthetase [Burkholderia multivorans ATCC 17616]
 gi|189335656|dbj|BAG44726.1| lipoic acid synthetase [Burkholderia multivorans ATCC 17616]
          Length = 330

 Score = 67.3 bits (163), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 80/221 (36%), Gaps = 12/221 (5%)

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
           + +  ++++    E  S  + G    +G   F+ + + C + C FC V + R   +    
Sbjct: 65  KTILREHNLHTVCEEASCPNIGECFGKGTATFMIMGDKCTRRCPFCDVGHGRPDPL--DA 122

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
            +  + AR +    +  + +   +    R    DG    F + +  + E     R+   T
Sbjct: 123 DEPKNLARTIAALKLKYVVITSVD----RDDLRDGGAAHFVECIREVREQSPETRIEILT 178

Query: 268 SHPRD-MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
              R  +   L   +     +M +    V     R+ K            +++   +++ 
Sbjct: 179 PDFRGRLDRALSILNAAPPDVMNHNLETV----PRLYKEARPGSDYAHSLKLLKDFKALH 234

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           PD+A  S  +VG  GET+++    M  +           +Y
Sbjct: 235 PDVATKSGLMVGL-GETEEEILQVMRDLRAHDVDMLTIGQY 274


>gi|309777534|ref|ZP_07672487.1| radical SAM domain protein [Erysipelotrichaceae bacterium 3_1_53]
 gi|308914709|gb|EFP60496.1| radical SAM domain protein [Erysipelotrichaceae bacterium 3_1_53]
          Length = 619

 Score = 67.3 bits (163), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 43/269 (15%), Positives = 84/269 (31%), Gaps = 51/269 (18%)

Query: 156 VEDKFERLSIVDGGYNRKRGVTAFLTIQ------EGCDKFCTFCVVPYTRGIEIS-RSLS 208
             D    L      + R   + A   +Q       GC   C FC + + +G  IS RS  
Sbjct: 257 EMDFTYSLPYERTYHPRYTYIPAIEEVQFSIVSNRGCFGSCAFCAITHHQGRVISTRSKD 316

Query: 209 QVVDEARKLIDN-GVCEIT--LLGQNVNAWR----------------------GKGLDGE 243
            +VDEA+++ +          + G   N  R                         L  +
Sbjct: 317 SIVDEAKRITEMPNFKGYIHDVGGPTANFSREACDKQREFGACKNRECLFPKGCSNLKVD 376

Query: 244 KCTFSDLLYSLSEIK---------GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP 294
              + ++L ++  +          G+           +  D L++ H     +   L + 
Sbjct: 377 HSRYLEILRAVRSLPRVKKVFIRSGIRYDYLMYDKNDEFFDELVQHH-----ISGQLKVA 431

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDF----IVGFPGETDDDFRAT 350
            +  +  +L  M +      Y + +D+ +    +  ++       +   PG   +     
Sbjct: 432 PEHINAAVLDKMGKP-RKELYLKFVDKFKQKNEEFHMNQYIVPYLMSSHPGSDLNAAIEL 490

Query: 351 MDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
              + KI Y       + P  GTP + M 
Sbjct: 491 ACYLKKIHYTPKQVQDFYPTPGTPATCMY 519


>gi|163797543|ref|ZP_02191493.1| radical SAM domain protein [alpha proteobacterium BAL199]
 gi|159177142|gb|EDP61702.1| radical SAM domain protein [alpha proteobacterium BAL199]
          Length = 675

 Score = 67.3 bits (163), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 52/292 (17%), Positives = 95/292 (32%), Gaps = 43/292 (14%)

Query: 90  LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF---- 145
           L     +     +VV+ G   +   + +    P V+ ++  +       +L         
Sbjct: 101 LAAEVKRRSPQTIVVIGGPHPKYGDDTVFAAHPAVDALIQGEGEVTFLAVLRSIAATGRL 160

Query: 146 -------------------GKRVVDTDYSVEDKFERLSIVDGGYNRKRG----VTAFLTI 182
                                R    D S       + ++DG     RG    V A L  
Sbjct: 161 AAVDGITVRDPDDGTIRVSQHRAKAGDLSAMPSPYTIGLMDGPLVDLRGQSVGVAATLES 220

Query: 183 QEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG 242
             GC   CTFC             + +V  +   + +NG+  + +   N    + +  D 
Sbjct: 221 NRGCPFQCTFCDWGSLGSKMAEFPIERVFADIDWIAENGIETLWMADSNFGMRK-RDRDI 279

Query: 243 EKCTFSDLLYSLSEIKGLVRLRY--TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300
                   L       G  R     T+ +       +++      +    L L  QS SD
Sbjct: 280 AIYLAEAHLR-----TGYPRRLIASTSKNSSRAVLEVVRPLAQTPMF-RGLTLSFQSHSD 333

Query: 301 RILKSMNR---RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
             L+ + R   +H+   + ++++  RS     +  +D I+G P ET D F+A
Sbjct: 334 SALRGIKRQNIKHST--FFELLEDARSS--GTSTYTDMILGLPEETLDSFKA 381


>gi|302339155|ref|YP_003804361.1| radical SAM protein [Spirochaeta smaragdinae DSM 11293]
 gi|301636340|gb|ADK81767.1| Radical SAM domain protein [Spirochaeta smaragdinae DSM 11293]
          Length = 492

 Score = 66.9 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 49/293 (16%), Positives = 92/293 (31%), Gaps = 17/293 (5%)

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
             ++ +S  K    L + + G     +     R      +  G         L   A   
Sbjct: 115 ALSMASSFRKLYPALRLGIGGAGVSVDPSRFERCGFFDLIFTGLGELSLRRWLAAGAPLS 174

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG-IEISR 205
            R      + E + E L  V      ++G    ++   GC   C FC      G    + 
Sbjct: 175 GRFDAPADACEGEKEALPAVSYH---EKGGILSISASRGCPMRCRFCANRLVHGLRFRTA 231

Query: 206 SLSQVVDEARK-LIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           S+S+++  A K ++D  V  I     N++A RG  L+           +    +  +  R
Sbjct: 232 SVSRIMAVAEKAVVDRHVRLIAFEDDNLSADRGWFLELLSALHRRFPEAWCSAENGIDYR 291

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +       +   L              +  + S      K   R  +   Y +++     
Sbjct: 292 FLDPDDLRIIFKL---------GFRKFNFSIASVESGERKRERRSGSLEHYARLVSAASG 342

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
           +     I + FI G PGE+ D     +  ++ +         + P  G  G +
Sbjct: 343 L--GAEIVTYFIAGLPGESFDIAVKNLLYLEALP-TVIGISLFYPVPGIEGFD 392


>gi|283850539|ref|ZP_06367827.1| Radical SAM domain protein [Desulfovibrio sp. FW1012B]
 gi|283574110|gb|EFC22082.1| Radical SAM domain protein [Desulfovibrio sp. FW1012B]
          Length = 619

 Score = 66.9 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 44/262 (16%), Positives = 81/262 (30%), Gaps = 35/262 (13%)

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI-EISRSL 207
            +D  Y++    E              +   L I  GC   C+FC +   +G    SRS 
Sbjct: 288 ALDALYALPFSKEPHPSYRQPIPAADMIRGSLNIHRGCAGGCSFCTLALHQGRAIRSRSR 347

Query: 208 SQVVDEARKLID-----------------------NGVCEITLLGQNVNAWRGKGLDGEK 244
           + V+ EA +L+D                        G  E  L    +     +    ++
Sbjct: 348 ASVLAEAVRLVDVQGFTGSISDVGGPSANMWGARCTGDMEACLRASCLTPKICRHFKADQ 407

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMP--YLHLPVQSGSDRI 302
             F DLL  ++ + G+  +R  +    D+     +A   +          +  +    R+
Sbjct: 408 GGFVDLLAEIARLPGVRHVRVASGWRMDLGLADKEALARMIRDFTGGQAKVAPEHTDARV 467

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIA----ISSDFIVGFPGETDDDFRATMDLV--DK 356
           L+ M +      + + +   +           +    +  FPG T +  R          
Sbjct: 468 LRLMRKP-PFAVFEEFVALFQRESGRAGKEQYVVPYLMSAFPGCTVESMRQMAAWFAGRG 526

Query: 357 IGYAQAFSFKYSPRLGTPGSNM 378
               Q   F   P  GT  + M
Sbjct: 527 WKPNQIQCFI--PLPGTAAAAM 546


>gi|221199893|ref|ZP_03572936.1| lipoyl synthase [Burkholderia multivorans CGD2M]
 gi|221207438|ref|ZP_03580447.1| lipoyl synthase [Burkholderia multivorans CGD2]
 gi|221172641|gb|EEE05079.1| lipoyl synthase [Burkholderia multivorans CGD2]
 gi|221180132|gb|EEE12536.1| lipoyl synthase [Burkholderia multivorans CGD2M]
          Length = 330

 Score = 66.9 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 80/221 (36%), Gaps = 12/221 (5%)

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
           + +  ++++    E  S  + G    +G   F+ + + C + C FC V + R   +    
Sbjct: 65  KTILREHNLHTVCEEASCPNIGECFGKGTATFMIMGDKCTRRCPFCDVGHGRPDPL--DA 122

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
            +  + AR +    +  + +   +    R    DG    F + +  + E     R+   T
Sbjct: 123 DEPKNLARTIAALKLKYVVITSVD----RDDLRDGGAAHFVECIREVREQSPETRIEILT 178

Query: 268 SHPRD-MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
              R  +   L   +     +M +    V     R+ K            +++   +++ 
Sbjct: 179 PDFRGRLDRALSILNAAPPDVMNHNLETV----PRLYKEARPGSDYAHSLKLLKDFKALH 234

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           PD+A  S  +VG  GET+++    M  +           +Y
Sbjct: 235 PDVATKSGLMVGL-GETEEEILQVMRDLRAHDVDMLTIGQY 274


>gi|221211102|ref|ZP_03584081.1| lipoyl synthase [Burkholderia multivorans CGD1]
 gi|221168463|gb|EEE00931.1| lipoyl synthase [Burkholderia multivorans CGD1]
          Length = 330

 Score = 66.9 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 80/221 (36%), Gaps = 12/221 (5%)

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
           + +  ++++    E  S  + G    +G   F+ + + C + C FC V + R   +    
Sbjct: 65  KTILREHNLHTVCEEASCPNIGECFGKGTATFMIMGDKCTRRCPFCDVGHGRPDPL--DA 122

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
            +  + AR +    +  + +   +    R    DG    F + +  + E     R+   T
Sbjct: 123 DEPKNLARTIAALKLKYVVITSVD----RDDLRDGGAAHFVECIREVREQSPETRIEILT 178

Query: 268 SHPRD-MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
              R  +   L   +     +M +    V     R+ K            +++   +++ 
Sbjct: 179 PDFRGRLDRALSILNAAPPDVMNHNLETV----PRLYKEARPGSDYAHSLKLLKDFKALH 234

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           PD+A  S  +VG  GET+++    M  +           +Y
Sbjct: 235 PDVATKSGLMVGL-GETEEEILQVMRDLRAHDVDMLTIGQY 274


>gi|171320078|ref|ZP_02909146.1| lipoic acid synthetase [Burkholderia ambifaria MEX-5]
 gi|171094675|gb|EDT39721.1| lipoic acid synthetase [Burkholderia ambifaria MEX-5]
          Length = 330

 Score = 66.9 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 79/221 (35%), Gaps = 12/221 (5%)

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
           + +  ++++    E  S  + G    +G   F+ + + C + C FC V + R   +    
Sbjct: 65  KTILREHNLHTVCEEASCPNIGECFGKGTATFMIMGDKCTRRCPFCDVGHGRPDPL--DA 122

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
            +  + AR +    +  + +   +    R    DG    F + +  + E     R+   T
Sbjct: 123 DEPKNLARTIAALKLKYVVITSVD----RDDLRDGGAAHFVECIREVREQSPETRIEILT 178

Query: 268 SHPRDMSDCLIKAH-GDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
              R   D  I         +M +    V     R+ K            +++   +++ 
Sbjct: 179 PDFRGRLDRAISILNAAPPDVMNHNLETV----PRLYKEARPGSDYAHSLKLLKDFKALH 234

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           PD+A  S  +VG  GET+++    M  +           +Y
Sbjct: 235 PDVATKSGLMVGL-GETEEEILQVMRDLRAHDVDMLTIGQY 274


>gi|317152752|ref|YP_004120800.1| Radical SAM domain-containing protein [Desulfovibrio aespoeensis
           Aspo-2]
 gi|316943003|gb|ADU62054.1| Radical SAM domain protein [Desulfovibrio aespoeensis Aspo-2]
          Length = 604

 Score = 66.9 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 62/376 (16%), Positives = 121/376 (32%), Gaps = 58/376 (15%)

Query: 74  EKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNV---VVGP 130
           + A +     L  +       +  G    V     V +    E +   P   +   ++  
Sbjct: 203 DNAEDMDLKTLRPLLARIPGVVTAGASGDVPDFAPVMELPSHEDILADPQALIRATLLLE 262

Query: 131 QTYYRLPELLERARFGKRVVDTDYSVE------DKFERLSIVDGGYNR-------KRGVT 177
           +  ++  E+  +    + V+ T           DK   L      +            + 
Sbjct: 263 RQVHQNREIAVQQSGDRLVILTPPGPPLDTRGLDKLAGLPFTRLPHPAYAERIPAADMIM 322

Query: 178 AFLTIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEAR---KLIDNGVCEITLLGQNVN 233
             +T   GC   C+FC +   +G +  SRS + ++ EA    ++   G     + G + N
Sbjct: 323 TSITTHRGCAGGCSFCTLALHQGRQIRSRSRASLLREAEAVTRVRGFGGSISDVGGPSAN 382

Query: 234 AWRGKGLDGEKC--------------------TFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
            W G+    +                       F DLL  ++ +  +  +R  +    D+
Sbjct: 383 MWGGRCASDQSACVRASCLTPAVCKHFTVSQSDFLDLLDGVAAVPSVKHVRVASGWRMDL 442

Query: 274 SDCLIKAHGDLDV--LMPYLHLPVQSGSDRILKSMNRRH--TAYEYRQIIDR---IRSVR 326
           +   +     L    +     +  ++ ++ +LK M +    T   +  + +R   I   R
Sbjct: 443 ALTDMPPLARLIRTYVGGQAKVAPENMAEHVLKLMRKPTFDTFERFLDVFERESKIAGKR 502

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML------- 379
             +      +  FPG TDDD RA    +   G+       + P  GT  + M        
Sbjct: 503 QYVIPY--LMSAFPGCTDDDMRALGQWLRDRGWKPEQVQCFIPLPGTAAAAMYHAGTDLK 560

Query: 380 -EQVD-ENVKAERLLC 393
              +      AERL  
Sbjct: 561 GNPIPVAKTDAERLRQ 576


>gi|260642797|ref|ZP_05417345.2| putative oxygen-independent coproporphyrinogen III oxidase
           [Bacteroides finegoldii DSM 17565]
 gi|260620486|gb|EEX43357.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Bacteroides finegoldii DSM 17565]
          Length = 335

 Score = 66.9 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 46/196 (23%), Positives = 75/196 (38%), Gaps = 13/196 (6%)

Query: 222 VCEITLLGQNVNAWR---GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPR--DMSDC 276
           + +  L G+++       G     EK  F  +  ++ E  GL   +  T      D+S  
Sbjct: 1   MRKEYLKGEDIETIYFGGGTPSQLEKEDFEQIFDTIREHYGLNHCQEITLEANPDDLSQE 60

Query: 277 LIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFI 336
            ++    L      L + +Q+  D  LK + RRH A    + IDR R       IS D I
Sbjct: 61  YLEMLSSLP--FNRLSMGIQTFDDATLKLLRRRHNARTAIEAIDRCRKAGFQ-NISIDLI 117

Query: 337 VGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ-----VDENVKAERL 391
            G P ET + +   +     +      ++       TP  NML+Q     VDE+   E  
Sbjct: 118 YGLPEETKERWENDLRQAISLNVEHISAYHLIYEEDTPIYNMLKQHQISEVDEDSSLEFF 177

Query: 392 LCLQKKLREQQVSFND 407
             L + L++      +
Sbjct: 178 TLLIEHLQKAGFEHYE 193


>gi|187778779|ref|ZP_02995252.1| hypothetical protein CLOSPO_02374 [Clostridium sporogenes ATCC
           15579]
 gi|187772404|gb|EDU36206.1| hypothetical protein CLOSPO_02374 [Clostridium sporogenes ATCC
           15579]
          Length = 559

 Score = 66.9 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 31/192 (16%), Positives = 70/192 (36%), Gaps = 16/192 (8%)

Query: 183 QEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG 242
             GC   C +C+     G      + +V  E + L+D  V  I  + +  N      ++ 
Sbjct: 180 SRGCPFKCKYCLSSTLHG-VRFHDIERVKKEIKFLVDKNVKLIKFVDRTFNCNHKFAMEV 238

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
            +   +    +           +       ++   +              + VQ+ ++ +
Sbjct: 239 WEYIINLDTDA---------TFHFEISADLLTKEELDILSKSKEGRIQFEVGVQTTNNEV 289

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV-----DKI 357
           LK++NR       ++ ++ ++ ++ +I    D I G PGE  + F+ + + V     ++I
Sbjct: 290 LKNINRHVNFETIKEKVEELKKLK-NIKQHLDLIAGLPGEDYNSFKISFNDVYSVEPEEI 348

Query: 358 GYAQAFSFKYSP 369
                   K SP
Sbjct: 349 QLGFLKLLKGSP 360


>gi|71907625|ref|YP_285212.1| radical SAM family protein [Dechloromonas aromatica RCB]
 gi|71847246|gb|AAZ46742.1| Radical SAM [Dechloromonas aromatica RCB]
          Length = 740

 Score = 66.9 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 48/287 (16%), Positives = 94/287 (32%), Gaps = 43/287 (14%)

Query: 117 ILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGV 176
           + +     +V + P  +    E L++                +    S  D        +
Sbjct: 331 LRQAHGERDVWLNPPPFPLSTEELDQVYE---------LPYARRPHPSYGDAKIPAWEMI 381

Query: 177 TAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDNGVCEITLLGQ----- 230
              + I  GC   CTFC +    G  I SRS   V+ E  ++ D       ++       
Sbjct: 382 RFSVNIMRGCFGGCTFCSITEHEGRIIQSRSEDSVIREIEEMRDKTPGFTGVVSDLGGPT 441

Query: 231 -NVNAWRGKG--------------------LDGEKCTFSDLLYSLSEIKGLVRLRYTTSH 269
            N+   + K                     ++ +      L      IKG+ +++  +  
Sbjct: 442 ANMFHLKCKDEKIESACRRLSCVYPDICENMNTDHSQLISLYRRARSIKGVKKVQIGSGL 501

Query: 270 PRDMSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRR--HTAYEYRQIIDRI-RS 324
             D++    +   +L    +  YL +  +   + +L  M +    +   ++Q+ DR  R 
Sbjct: 502 RYDLAVRSPEYIKELVTHHVGGYLKIAPEHTEEGVLSKMMKPGIGSYDRFKQLFDRFSRE 561

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDK--IGYAQAFSFKYSP 369
              +  +   FI   PG TD+D       + K      Q  +F  +P
Sbjct: 562 AGKEQYLIPYFIAAHPGTTDEDMLNLALWLKKNNFRLDQVQTFIPTP 608


>gi|167585321|ref|ZP_02377709.1| lipoyl synthase [Burkholderia ubonensis Bu]
          Length = 330

 Score = 66.9 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 79/221 (35%), Gaps = 12/221 (5%)

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
           + +  ++++    E  S  + G    +G   F+ + + C + C FC V + R   +    
Sbjct: 65  KTILREHNLHTVCEEASCPNIGECFGKGTATFMIMGDKCTRRCPFCDVGHGRPDPL--DA 122

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
            +  + AR +    +  + +   +    R    DG    F + +  + E     R+   T
Sbjct: 123 DEPKNLARTIAALKLKYVVITSVD----RDDLRDGGAAHFVECIREVREQSPETRIEILT 178

Query: 268 SHPRDMSDCLIKAH-GDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
              R   D  I         +M +    V     R+ K            +++   +++ 
Sbjct: 179 PDFRGRLDRAISILNAAPPDVMNHNLETV----PRLYKEARPGSDYAHSLKLLKDFKALH 234

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           PD+A  S  +VG  GET+++    M  +           +Y
Sbjct: 235 PDVATKSGLMVGL-GETEEEILQVMRDLRAHDVDMLTIGQY 274


>gi|94266077|ref|ZP_01289795.1| Radical SAM [delta proteobacterium MLMS-1]
 gi|93453360|gb|EAT03791.1| Radical SAM [delta proteobacterium MLMS-1]
          Length = 912

 Score = 66.9 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 49/258 (18%), Positives = 95/258 (36%), Gaps = 20/258 (7%)

Query: 158 DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKL 217
           D     S       R       L I  GC + C FC           R  ++++ EA   
Sbjct: 239 DAVAPASPPLVPATRIVHDRLGLEIARGCTRGCRFCQAGIIYRPVREREPARLLAEALAH 298

Query: 218 IDN-GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDC 276
           I+  G  E+ LL  +   +              L+ +L++ K  V +   +     ++  
Sbjct: 299 IEQTGFDEVALLSLSSGDYACINE-----LLGRLMDALAQRK--VSVSLPSMRVGTLTAE 351

Query: 277 LIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFI 336
           +++    +        L  ++GS+R+ + +N+  +  +     +   ++   + I   F+
Sbjct: 352 MMEQIRRVRK--TGFTLAPEAGSERLRRVLNKGISEADLLSAAEAAFALGWQV-IKLYFM 408

Query: 337 VGFPGETDDDFRATMDLVDKI---GYAQAFSFKYS-----PRLGTPGSNMLEQVDENVKA 388
            G P ETD+D  A ++L  K+   G         S     P+  TP      Q+      
Sbjct: 409 FGLPTETDEDLAAMVELAHKVSQTGKDGRCGVTVSSAIFVPKPHTP-FEREPQMGIEEGF 467

Query: 389 ERLLCLQKKLREQQVSFN 406
            R+  L++KLR ++    
Sbjct: 468 ARIDYLKQKLRARKFKLK 485


>gi|218777948|ref|YP_002429266.1| radical SAM domain protein [Desulfatibacillum alkenivorans AK-01]
 gi|218759332|gb|ACL01798.1| Radical SAM domain protein [Desulfatibacillum alkenivorans AK-01]
          Length = 494

 Score = 66.9 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 46/274 (16%), Positives = 95/274 (34%), Gaps = 20/274 (7%)

Query: 125 NVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVD------GGYNRKRGVTA 178
           + + G        ++++      R  D D      ++ +++ D          R   + A
Sbjct: 147 DQIAGLAFRDDSGKIIDNPPSKNRA-DLDALPYPAYDLINLQDYVGRDRMTPVRTTQLYA 205

Query: 179 FLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK 238
            L    GC   C +C      G   + S  +VVDE   +I+         G +       
Sbjct: 206 PLFTSRGCPYHCIYCH-DIFSGKFRAMSAMRVVDEIEHMINA-------YGVHEFEVYDD 257

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM-SDCLIKAHGDLDVLMPYLHLPVQS 297
             + +K    D+   + +        +      D+     ++A  D+  +  ++   V++
Sbjct: 258 IFNLDKQRVKDISAEIKKRGLETYFTFPNGVRGDILDRETLEALKDMGTV--HMAFAVET 315

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
            S RI K + +     + R+ I     ++  I      ++G P E+  +   T+      
Sbjct: 316 ASPRIQKVLRKNINLKKIRENIAIAADLK--IFTWGFLMMGLPKESRWELWKTIWFATSS 373

Query: 358 GYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERL 391
               A+ F   P  GT  +   E+  E+   +RL
Sbjct: 374 KLHGAYFFPVVPFEGTELAQKYEEAIESHGEKRL 407


>gi|148241396|ref|YP_001226553.1| Fe-S oxidoreductase [Synechococcus sp. RCC307]
 gi|147849706|emb|CAK27200.1| Fe-S oxidoreductase [Synechococcus sp. RCC307]
          Length = 519

 Score = 66.9 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 58/330 (17%), Positives = 117/330 (35%), Gaps = 37/330 (11%)

Query: 62  ADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRS 121
           A+L++++   +     +K    + +I N K         L V V G  A +  +      
Sbjct: 66  AELVIISGMIV-----QKDDMAV-QIANAKER------GLPVAVGGPFASSTPD--APEL 111

Query: 122 PIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAF-- 179
            + +  V  +    LP  +E    G+R     +S E +   ++           + A+  
Sbjct: 112 DLADFKVLDEGEITLPMFIEAIERGER--SGRFSSEGEKPDVTATPIPRFDLLQLDAYDS 169

Query: 180 --LTIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR 236
             +    GC   C FC +    G +  +++  Q+V E + L D G      L  +     
Sbjct: 170 MSVQFSRGCPFNCEFCDIIVLYGRKPRTKTPEQLVAELQYLYDLGWRRSIFLVDD----- 224

Query: 237 GKGLDGEKCTFSDLLYSLSEIKGLVRLRYT----TSHPRDMSDCLIKAHGDLDVLMPYLH 292
                G K     LL  + + +      ++     S      + +++   D       + 
Sbjct: 225 --NFIGNKRNAKLLLPEIRKWQEERGYPFSFATEASVDLADDEEMMRMMADCR--FESVF 280

Query: 293 LPVQSGSDRILKSMNR-RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351
           L +++  +  L++  + ++T       +DRI +    I + + FI+GF GE        +
Sbjct: 281 LGIETPDEASLETARKVQNTRNPLDAAVDRITAN--GIRVMAGFIIGFDGEKSGAGDRIV 338

Query: 352 DLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           + V + G   A          T     LE+
Sbjct: 339 EFVTRTGIPAAMMGMLQALPKTALWARLEK 368


>gi|158320265|ref|YP_001512772.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Alkaliphilus oremlandii OhILAs]
 gi|158140464|gb|ABW18776.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Alkaliphilus oremlandii OhILAs]
          Length = 379

 Score = 66.9 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 37/204 (18%), Positives = 74/204 (36%), Gaps = 20/204 (9%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNV-NAWRGKGLDGEK 244
           C+K C +C      G                 I     E+   G+ +          G  
Sbjct: 13  CEKKCHYCDFNSYSGKN---------HLVDGYIKALKKEMQQYGEIIKGHSVATVFFGGG 63

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDC-------LIKAHGDLDVLMPYLHLPVQS 297
                    ++EI   +R  YT     ++S           K        +  L + +QS
Sbjct: 64  TPSILTGEQMAEIMETLRRYYTLEEQAEISMEANPGTLNFHKLKAYYKSGINRLSMGLQS 123

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA-ISSDFIVGFPGETDDDFRATMDLVDK 356
             + +LK++ R H+  EY + ++  R        I++D +   PG+T+ D++ +++ +  
Sbjct: 124 CQNHLLKTLGRIHSFEEYVKNLEDARKA--GFTNINTDLMFSLPGQTERDWQESLEKIVS 181

Query: 357 IGYAQAFSFKYSPRLGTPGSNMLE 380
           +G     ++      GTP  + +E
Sbjct: 182 LGIPHISAYSLIVEEGTPFFSWVE 205


>gi|27378106|ref|NP_769635.1| hypothetical protein blr2995 [Bradyrhizobium japonicum USDA 110]
 gi|27351253|dbj|BAC48260.1| blr2995 [Bradyrhizobium japonicum USDA 110]
          Length = 546

 Score = 66.9 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 55/328 (16%), Positives = 111/328 (33%), Gaps = 32/328 (9%)

Query: 62  ADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRS 121
           A+++ ++  HI+ +    +                   DL V + G    A  +      
Sbjct: 94  AEVVFVSGMHIQRQQMNDICRRAHEF------------DLPVALGGPSVSACPD-YYPSF 140

Query: 122 PIVNVVVGPQTYYRLPELLER--ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAF 179
             ++V        +L E+L R  +R   +VV T        E         + K+     
Sbjct: 141 DYLHVGELGDATNQLIEILSRDISRPETQVVLTTKDRVPMTEFPIPAYELADVKKYFLGS 200

Query: 180 LTIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK 238
           +    GC   C FC +P   G     +S  Q++ E  +L + G+        +   +   
Sbjct: 201 IQYSSGCPYQCEFCDIPGLYGRNPRIKSPEQIIAELDRLRECGM-------TDTVYFVDD 253

Query: 239 GLDGEKCTFSDLLYSLSEIKG----LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP 294
              G +    DLL  L E +     +VRL    +        +++   +   +   +   
Sbjct: 254 NFIGNRKAAMDLLPHLIEWQKKTGYVVRLACEATLNIAKRPEILEKMREAYFI--TIFCG 311

Query: 295 VQSGSDRILKSMNRRHTAY-EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
           +++     LK+M++ H       + +  I S    + + S  I+G   +  +   A +  
Sbjct: 312 IETPDPDALKAMHKDHNMMVPILEGVRTINSY--GMEVVSGIIMGLDTDKPNTSEALLAF 369

Query: 354 VDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           V++                TP  + LE+
Sbjct: 370 VEESRIPLLTINLLQALPKTPLWDRLER 397


>gi|187933035|ref|YP_001885089.1| coproporphyrinogen III oxidase [Clostridium botulinum B str. Eklund
           17B]
 gi|187721188|gb|ACD22409.1| oxygen-independent coproporphyrinogen III oxidase [Clostridium
           botulinum B str. Eklund 17B]
          Length = 379

 Score = 66.9 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 85/221 (38%), Gaps = 18/221 (8%)

Query: 186 CDKFCTFCVVPYTRGIEI--SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
           C + C +C  P   G E   S  ++ +  E R    N   +   +G       G      
Sbjct: 18  CKQKCLYCDFPSYSGKEKFISEYINSLNKEIRAKASNYKIKSIFIG------GGTPSYLN 71

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTT-SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
           +     LL  ++ +     L +T   +P  +++  +K     +  +  + + +QS    +
Sbjct: 72  EIELEKLLKCINTLTLEENLEFTMECNPGSLNEDKLKIMKKYN--VNRISMGLQSTKLSL 129

Query: 303 LKSMNRRHTAYEYRQIIDRIRSV-RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
           LK + R HT  E+       R V   +I I  D + G P ++ +D+R T++ + +     
Sbjct: 130 LKEIGRIHTLEEFENNYLLARKVGFKNINI--DLMFGLPNQSVEDWRKTLEKIIEFNPEH 187

Query: 362 AFSFKYSPRLGTPGSNMLEQ----VDENVKAERLLCLQKKL 398
             ++      GT   N+  Q    +    K   +  L K+L
Sbjct: 188 ISAYSLIIEEGTCFYNLYNQGKLNLPSEEKERDMYLLTKEL 228


>gi|325924241|ref|ZP_08185796.1| Fe-S oxidoreductase [Xanthomonas gardneri ATCC 19865]
 gi|325545280|gb|EGD16579.1| Fe-S oxidoreductase [Xanthomonas gardneri ATCC 19865]
          Length = 517

 Score = 66.9 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 47/267 (17%), Positives = 77/267 (28%), Gaps = 22/267 (8%)

Query: 126 VVVGPQTYYRLPELLERARFGKRVVDTDYS---VEDKFERLSIVDGGYNRKRGVTAFLTI 182
            + G       P        G +  D   S     D  +          R    +  +  
Sbjct: 176 WLAGVARIATSPSAEAHVHRGAQPPDARLSGLPAWDLVDMPRYQRFWQQRHGYFSLNMAA 235

Query: 183 QEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG 242
             GC   C +C  P        R    V  E   L  +   +   +  ++  +    ++ 
Sbjct: 236 SRGCPFRCNWCAKPIWGNHYKRRDAEDVAAEMIHLKRSFQPDHIWMADDIFGFHIDWVET 295

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
                +D   ++          +T     D++   + A            L  +SGS RI
Sbjct: 296 FAQRLTDADGAI---------PFTIQTRADLASERMAAALARAGCAEAW-LGAESGSQRI 345

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           L  M +  T  E      R+ +    I +     +G+ GE  DD  AT  LV +      
Sbjct: 346 LDKMTKGTTVGEVIAARQRLGAR--GIRVGFFIQLGYLGEELDDILATRALVTQANPDII 403

Query: 363 FSFKYSPRLGTPGSNMLEQVDENVKAE 389
                 P  GT          E VK +
Sbjct: 404 GVSVSYPLPGTKFY-------EEVKNQ 423


>gi|251791715|ref|YP_003006436.1| coproporphyrinogen III oxidase [Dickeya zeae Ech1591]
 gi|247540336|gb|ACT08957.1| oxygen-independent coproporphyrinogen III oxidase [Dickeya zeae
           Ech1591]
          Length = 457

 Score = 66.9 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 45/234 (19%), Positives = 86/234 (36%), Gaps = 17/234 (7%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC         ++R L +  +   +L         L           G  G   
Sbjct: 62  CHRLCYFC----GCNKLVTRQLHKADEYLDRLALEIHQRAPLFANRTVTQMHWG--GGTP 115

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL-------MPYLHLPVQSG 298
           TF      +S +  L+R  +  S   +MS  +     +LDVL          L + VQ  
Sbjct: 116 TF-LNKAQISRLMALLRRHFHFSEHAEMSLEVDPREIELDVLDHLRAEGFNRLSMGVQDF 174

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           +  + + +NR         +I+R +++    + + D I G P +T D F  T+  V ++ 
Sbjct: 175 NKEVQRLVNREQDEAFIFALIERAKAL-GFASTNIDLIYGLPKQTPDSFAFTLQRVAELR 233

Query: 359 YAQAFSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVG 411
             +   F Y+       +   ++  D     ++L  LQ+ ++    +     +G
Sbjct: 234 PDRLSVFNYAHLPNLFAAQRKIKDADLPDAEQKLAILQQTIQSLTAAGYQ-FIG 286


>gi|116250210|ref|YP_766048.1| vitamin B12 binding methyltransferase [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115254858|emb|CAK05932.1| putative vitamin B12 binding methyltransferase [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 509

 Score = 66.9 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 34/213 (15%), Positives = 70/213 (32%), Gaps = 15/213 (7%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQV-VDEARKLIDNGVCEITLLGQNVNAWRGK 238
           +    GC   C +C           RS      + AR   + GV  I L  +N  + R  
Sbjct: 197 MQFSRGCPHLCNYCGQRGFWTRWRHRSPELFAREIARLYREEGVELINLADENPTSSR-- 254

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
                K   + L   + E   +  +  T +        ++  +    V+     + +++ 
Sbjct: 255 -----KAWLAFLEAMIIENVPVQIVGSTRADDIVRDADILHLYRKAGVVR--WLIGMENT 307

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
            +  L  + +       R+ I  +R    DI   + ++VGF  ET          +    
Sbjct: 308 DEATLTLIKKGGAKATDREAIRLLRQ--HDILSMATWVVGFEEETLSHLLRGFRQLLSYD 365

Query: 359 YAQAFSFKYSPRLGTPGSNMLEQ---VDENVKA 388
             Q  +   +P   TP   +      ++ +++ 
Sbjct: 366 PDQIQALYVTPHRWTPFFRIARDRQVIETDIRK 398


>gi|330501641|ref|YP_004378510.1| hypothetical protein MDS_0727 [Pseudomonas mendocina NK-01]
 gi|328915927|gb|AEB56758.1| hypothetical protein MDS_0727 [Pseudomonas mendocina NK-01]
          Length = 770

 Score = 66.9 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 62/415 (14%), Positives = 134/415 (32%), Gaps = 56/415 (13%)

Query: 36  MNVYDSLR--MEDMFFSQGYERVNSMDDADLI-VLNTCHIREKAAEKVYSFLGRIRNLKN 92
           +N  D+    +E    +     V   ++A ++ +L +  +     +K    L     ++N
Sbjct: 250 VNTQDTEACAIEQDKGAANRGEVEDPNEAKVVQILESPRMT---RDKTVIRLPSFEKVRN 306

Query: 93  SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDT 152
             +       V+            ++++   V+V   P       E            + 
Sbjct: 307 DPVLYAHANRVLHLE-TNPGNARALVQKHGEVDVWFNPPPIPMTTE------------EM 353

Query: 153 DYSVEDKFERLSIVDGGY---NRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSLS 208
           DY     + R+     G         +   + I  GC   CTFC +    G  I +RS  
Sbjct: 354 DYVFGMPYARVPHPAYGKEKIPAYEMIRFSVNIMRGCFGGCTFCSITEHEGRIIQNRSHE 413

Query: 209 QVVDEARKLIDN--GVCEIT--LLGQNVNAWR----------------------GKGLDG 242
            ++ E  ++ D   G   +   L G   N +R                       + L+ 
Sbjct: 414 SIIREIEEMRDKVPGFTGVVSDLGGPTANMYRIACKDPEIERHCRKPSCVFPGICENLNT 473

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL--DVLMPYLHLPVQSGSD 300
           +  +  +L      + G+ ++   +    D++    +   +L    +  YL +  +    
Sbjct: 474 DHSSLIELYRKARALPGVKKILIASGLRYDLAVESPEYVKELVTHHVGGYLKIAPEHTER 533

Query: 301 RILKSMNRR--HTAYEYRQIIDRI-RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
             L  M +    +   ++Q+ ++  +    +  +   FI   PG TD+D       + + 
Sbjct: 534 GPLDKMMKPGIGSYDRFKQMFEKFSKEAGKEQYLIPYFIAAHPGTTDEDMMNLALWLKRN 593

Query: 358 GY--AQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACV 410
           G+   Q  +F  SP           +        +   ++    EQQ   + A +
Sbjct: 594 GFRADQVQAFYPSPMATATAMYHSGKNPLRKVTYKSDGVEIVKSEQQRRLHKAFL 648


>gi|239993766|ref|ZP_04714290.1| hypothetical protein AmacA2_04691 [Alteromonas macleodii ATCC
           27126]
          Length = 509

 Score = 66.9 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 67/407 (16%), Positives = 127/407 (31%), Gaps = 66/407 (16%)

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           I+  +  + K      V V     +   +  +  +    ++           L++R    
Sbjct: 8   IQPAQKEKEKRKPWENVYVKLPAYETVKDNKVLYAHTSRILHQETNPGCARALMQRHGDR 67

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTA-------------FLTIQEGCDKFCTFC 193
              ++      +  E  ++ D  Y R                    + I  GC   CTFC
Sbjct: 68  HIWINPPAMPLETEEMDAVFDLPYQRVPHPVYGDAKIPAYDMIRFSINIMRGCYGGCTFC 127

Query: 194 VVPYTRGIEI-SRSLSQVVDEARKLIDN--GVCEIT--LLGQNVNAWR------------ 236
            +    G  I SRS   ++ E  ++ D   G   +   L G   N +R            
Sbjct: 128 SITEHEGRIIQSRSEDSIIREIEQIRDTVPGFTGVISDLGGPTANMYRLRCKSPKAEATC 187

Query: 237 ----------GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGD--L 284
                        +D +     DL     E+ G+ ++   +    D++    +   +  L
Sbjct: 188 RRPSCVYPSICAHMDTDHKPTIDLYRRARELPGIKKILIASGVRYDLAVEDPEYVKELAL 247

Query: 285 DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR--QIIDRI-RSVRPDIAISSDFIVGFPG 341
             +  YL +  +   D  L  M +      YR  ++ D+  +       +   FI   PG
Sbjct: 248 HHVGGYLKIAPEHTEDGPLSKMMKPGMGSYYRFKELFDKYSQEAGKKQYLIPYFIASHPG 307

Query: 342 ETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML--------------EQVDENVK 387
            TD+D  +    + +  +       + P      + M               E+V    K
Sbjct: 308 TTDEDMLSLAIWLKENKFKLDQVQNFYPSPMATATTMYHTEVNSLRKVTKDSEEVPSA-K 366

Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPW 434
            E    L K +       N A + + ++    + G+E   L+GR P 
Sbjct: 367 GEIHRRLHKAMLRYHDPKNFAQIREALK----RMGRED--LIGRGPQ 407


>gi|66768857|ref|YP_243619.1| Mg-protoporphyrin IX monomethyl ester oxidative cyclase
           [Xanthomonas campestris pv. campestris str. 8004]
 gi|66574189|gb|AAY49599.1| Mg-protoporphyrin IX monomethyl ester oxidative cyclase
           [Xanthomonas campestris pv. campestris str. 8004]
          Length = 570

 Score = 66.9 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 39/207 (18%), Positives = 62/207 (29%), Gaps = 19/207 (9%)

Query: 183 QEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG 242
             GC   C +C  P        RS   V  E   L      +   +  ++  +    ++ 
Sbjct: 291 SRGCPFRCNWCAKPIWGNHYKRRSAEDVAAEMIHLKRTFGPDHIWMADDIFGFHIDWVET 350

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
                      LS+  G   + +      D++     A            L  +SGS RI
Sbjct: 351 -------FAEQLSDADGA--IPFMIQTRADLASD-RMATALARAGCAEAWLGAESGSQRI 400

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           L  M +     +      R+ +    I +     +G+ GE   D  AT  LV +      
Sbjct: 401 LDKMTKGTQVADVIAARRRLGAR--GIRVGFFIQLGYLGEELVDILATRALVREAAPDLI 458

Query: 363 FSFKYSPRLGTPGSNMLEQVDENVKAE 389
                 P  GT          E VK +
Sbjct: 459 GVSVSYPLPGTKFY-------EEVKNQ 478


>gi|15895280|ref|NP_348629.1| Fe-S oxidoreductase [Clostridium acetobutylicum ATCC 824]
 gi|15024993|gb|AAK79969.1|AE007705_3 Predicted Fe-S oxidoreductase [Clostridium acetobutylicum ATCC 824]
 gi|325509426|gb|ADZ21062.1| Fe-S oxidoreductase [Clostridium acetobutylicum EA 2018]
          Length = 472

 Score = 66.9 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 35/209 (16%), Positives = 76/209 (36%), Gaps = 21/209 (10%)

Query: 171 NRKRGVTAFLTIQEGCDKFCTFC-VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLG 229
            +      +L+  EGC   C FC +   T G    RS+  ++ E +K+  +    I    
Sbjct: 212 PKVNKTIHYLSTSEGCTNKCNFCYLWKMTNGHFYHRSVDAIIQEIKKM--DKYNVIRFCD 269

Query: 230 QNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMS----DCLIKAHGDLD 285
            N        ++  K  F+ ++      +GL R        R  +      +I+      
Sbjct: 270 ANTFG----DVNKAKVLFNRIIE-----EGLNRNHIYMGDVRTDTVVKYPEIIEL--ASK 318

Query: 286 VLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDD 345
             +      +++ SD  LK   + ++    ++ +  +     +I ++ ++I+  P   + 
Sbjct: 319 AGLRITICGLEATSDEELKEYGKDNSIENTKKALKILNEA--NIYVNGNYIIK-PSYDER 375

Query: 346 DFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
           DF      +D+     +     +P  GT 
Sbjct: 376 DFERVGKFIDENPIYNSAFTILTPFPGTE 404


>gi|21231135|ref|NP_637052.1| Mg-protoporphyrin IX monomethyl ester oxidative cyclase
           [Xanthomonas campestris pv. campestris str. ATCC 33913]
 gi|21112771|gb|AAM40976.1| Mg-protoporphyrin IX monomethyl ester oxidative cyclase
           [Xanthomonas campestris pv. campestris str. ATCC 33913]
          Length = 571

 Score = 66.9 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 39/207 (18%), Positives = 62/207 (29%), Gaps = 19/207 (9%)

Query: 183 QEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG 242
             GC   C +C  P        RS   V  E   L      +   +  ++  +    ++ 
Sbjct: 291 SRGCPFRCNWCAKPIWGNHYKRRSAEDVAAEMIHLKRTFGPDHIWMADDIFGFHIDWVET 350

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
                      LS+  G   + +      D++     A            L  +SGS RI
Sbjct: 351 -------FAEQLSDADGA--IPFMIQTRADLASD-RMATALARAGCAEAWLGAESGSQRI 400

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           L  M +     +      R+ +    I +     +G+ GE   D  AT  LV +      
Sbjct: 401 LDKMTKGTQVADVIAARRRLGAR--GIRVGFFIQLGYLGEELVDILATRALVREAAPDLI 458

Query: 363 FSFKYSPRLGTPGSNMLEQVDENVKAE 389
                 P  GT          E VK +
Sbjct: 459 GVSVSYPLPGTKFY-------EEVKNQ 478


>gi|167042893|gb|ABZ07609.1| putative Radical SAM superfamily protein [uncultured marine
           microorganism HF4000_ANIW137K11]
          Length = 714

 Score = 66.9 bits (162), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 46/264 (17%), Positives = 88/264 (33%), Gaps = 35/264 (13%)

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRG---VTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRS 206
           + DY  +  + R         R      +   + I  GC   CTFC +    G  I SRS
Sbjct: 359 EMDYVYDLTYARTPHPAYKGERIPAWEMIRFSVNIMRGCFGGCTFCSITEHEGRIIQSRS 418

Query: 207 LSQVVDEARKLIDN--GVCEIT--LLGQNVNAWR----------------------GKGL 240
            + ++ E  ++ D   G       L G   N +R                       + L
Sbjct: 419 EASILKELEEVRDKVEGFTGTISDLGGPTANMYRLACKSETIEKNCRKLSCVFPGICENL 478

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL--DVLMPYLHLPVQSG 298
           + +      L      I G+ R++  +    D++    +   +L    +  YL +  +  
Sbjct: 479 NTDHSHLIQLYRKARAIPGIKRIQIGSGLRYDLAVKSPEYVKELVQHHVGGYLKIAPEHS 538

Query: 299 SDRILKSMNRRHTAYE--YRQIIDRI-RSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
            + +L  M +        ++++ +R  R    +  +   FI   PG TD+D       + 
Sbjct: 539 EENVLSKMMKPAMTAYDEFKEMFERFSREAGKEQYLIPYFIAAHPGTTDEDMLNLALWLK 598

Query: 356 KIGYAQAFSFKYSPRLGTPGSNML 379
           K  +       ++P      + M 
Sbjct: 599 KYDFKLDQVQTFTPTPMAMATAMY 622


>gi|124021926|ref|YP_001016233.1| Fe-S oxidoreductase [Prochlorococcus marinus str. MIT 9303]
 gi|123962212|gb|ABM76968.1| Fe-S oxidoreductase [Prochlorococcus marinus str. MIT 9303]
          Length = 524

 Score = 66.9 bits (162), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 59/342 (17%), Positives = 122/342 (35%), Gaps = 43/342 (12%)

Query: 62  ADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRS 121
           A+L+V++   +++           +I   K         L V V G  A +  E      
Sbjct: 66  AELVVISGMIVQKD------DMQRQIAEAKRR------GLSVAVGGPFASSTPE--APEI 111

Query: 122 PIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAF-- 179
            + +  V  +    LP  +E  + G+      +S E     ++           + A+  
Sbjct: 112 DLADFKVLDEGEITLPMFVEAIQRGE--TSGRFSAEGDKPDVTSTPIPRFDLLELDAYDS 169

Query: 180 --LTIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR 236
             +    GC   C FC +    G +  +++  Q++ E + + D G      L  +     
Sbjct: 170 MSVQFSRGCPFNCEFCDIIVLYGRKPRTKTPEQLIAELQSIYDLGWRRSIFLVDD----- 224

Query: 237 GKGLDGEKCTFSDLLYSLSEIKGLVRLRYT----TSHPRDMSDCLIKAHGDLDVLMPYLH 292
                G K     LL ++ + +      ++     S      D +++   +       + 
Sbjct: 225 --NFIGNKRNAKLLLPAIRQWQEEKGYPFSFATEASVDLADDDEMMRMMHEAR--FESVF 280

Query: 293 LPVQSGSDRILKSMNR-RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351
           L +++  +  L++  + ++T +   + +D+I +    I + + FI+GF GE D      +
Sbjct: 281 LGIETPDEASLETARKIQNTRHPLDEAVDKITAN--GIRVMAGFIIGFDGEKDGAGARIV 338

Query: 352 DLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLC 393
           D V + G   A          T   + LE      K  RL+ 
Sbjct: 339 DFVTRTGIPAAMMGMLQALPNTALWHRLE------KEGRLIE 374


>gi|256827197|ref|YP_003151156.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Cryptobacterium curtum DSM 15641]
 gi|256583340|gb|ACU94474.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Cryptobacterium curtum DSM 15641]
          Length = 368

 Score = 66.9 bits (162), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 40/195 (20%), Positives = 68/195 (34%), Gaps = 4/195 (2%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEK 244
           C   C++C          S  +   V+     +     +  L       + G        
Sbjct: 15  CRAKCSYCDFASHVPGHNS-EMDAYVEAVVLALRARGRDGLLSDIETVYFGGGTPTFLGP 73

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304
              + LLY+LS    L      T      S           +    L L VQS  D +L 
Sbjct: 74  ARLTQLLYALSLSMHLTDTVECTIEANPESLTRRMVRDLWALGANRLSLGVQSFDDTVLG 133

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
            + R H+A + R+ ID       +++I  D I G PG+T   F +++     +G +    
Sbjct: 134 ILGRPHSADDARRAIDDAHDRFHNVSI--DLICGIPGQTPGSFLSSVQEAIALGVSHISI 191

Query: 365 FKYSPRLGTPGSNML 379
           +  +   GTP  ++ 
Sbjct: 192 YPLTIEEGTPFYSLY 206


>gi|124265509|ref|YP_001019513.1| lipoyl synthase [Methylibium petroleiphilum PM1]
 gi|124258284|gb|ABM93278.1| lipoic acid synthetase [Methylibium petroleiphilum PM1]
          Length = 339

 Score = 66.9 bits (162), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 77/221 (34%), Gaps = 12/221 (5%)

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
           + +  ++ +    E  S  + G    +G   F+ + + C + C FC V + R   +    
Sbjct: 70  KQILREHKLHTVCEEASCPNIGECFGKGTATFMIMGDKCTRRCPFCDVGHGRPDPL--DP 127

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
            +  + A+ +    +  + +   +    R    DG    F + +  +  +    R+   T
Sbjct: 128 DEPQNLAKTIAALKLSYVVITSVD----RDDLRDGGAAHFVECIRQVRALSPATRIEILT 183

Query: 268 SHPRDMSDCLIKAH-GDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
              R  +D  ++        +M +        + R+ K             ++ R ++  
Sbjct: 184 PDFRGRADRALEILKAAPPDVMNHNL----ETAPRLYKEARPGSDYQFSLDLLKRFKAFA 239

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           P +   S  +VG  GETD++    M  +           +Y
Sbjct: 240 PGVPTKSGIMVGL-GETDEEILQVMRDMRAHDIDMITIGQY 279


>gi|118443668|ref|YP_877721.1| magnesium-protoporphyrin IX monomethyl ester oxidative cyclase
           [Clostridium novyi NT]
 gi|118134124|gb|ABK61168.1| magnesium-protoporphyrin IX monomethyl ester oxidative cyclase
           [Clostridium novyi NT]
          Length = 590

 Score = 66.9 bits (162), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 39/217 (17%), Positives = 80/217 (36%), Gaps = 17/217 (7%)

Query: 158 DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKL 217
           D  + +   D   + K  +  +     GC   C +C+          R++  V  E +  
Sbjct: 186 DINQVVFPYDENDDLKNKIVYYEA-SRGCPYGCKYCL-SSVDKNLRFRNIETVKKELKYF 243

Query: 218 IDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCL 277
           ID  V  +  + +  NA     +D        +   L E     +  +  S    +++  
Sbjct: 244 IDKEVRLVKFVDRTFNANEQFAID--------IWQFLIEQNTNTKFHFEIS-ANILTEKQ 294

Query: 278 IKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIV 337
                          + VQ+ +++IL+++NR     +  + ++ I+ +  +I+   D I 
Sbjct: 295 FNVLSKSPKGRLQFEVGVQTTNNKILRNINRYVNFKDIEEKVEEIKKLN-NISQHLDLIA 353

Query: 338 GFPGETDDDFRATMDLV-----DKIGYAQAFSFKYSP 369
           G PGE  + F  + + V     ++I        K SP
Sbjct: 354 GLPGEDLNSFINSFNDVYSIKPEEIQLGFLKLLKGSP 390


>gi|170738462|ref|YP_001767117.1| radical SAM domain-containing protein [Methylobacterium sp. 4-46]
 gi|168192736|gb|ACA14683.1| Radical SAM domain protein [Methylobacterium sp. 4-46]
          Length = 716

 Score = 66.9 bits (162), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 41/242 (16%), Positives = 71/242 (29%), Gaps = 30/242 (12%)

Query: 129 GPQTYYRLPELLE----RARFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQ 183
           G + + ++P  L     R R G   V D D      F  L +              + + 
Sbjct: 252 GARDFAKVPNFLHVAEGRVRMGPTHVEDVDALPTPDFAGLPLAGYLAP---APILPILVG 308

Query: 184 EGC-DKFCTFCVVPYT----RGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRG 237
           +GC    C FC +P+     R     R   ++  +   L    G        + +     
Sbjct: 309 KGCYFNACKFCDIPFINHVSRKPYRIRRPERIAQDILTLNARFGCRHFEFTDEALP---- 364

Query: 238 KGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD--MSDCLIKAHGDLDVLMPYLHLPV 295
                       +  +L        L +T     +   +  L      +      L   +
Sbjct: 365 ------PRLLDGVADALGAEAASRGLSFTGYARLEPGFTAPLCAKLARMG--FRKLFFGL 416

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
           +SG    L  M +       R ++   R     I      I+GFP ET+   R T+   +
Sbjct: 417 ESGDQATLDHMRKGIRLENVRPVLGHCREA--GIHFHVFSIIGFPEETEASARRTLGFFE 474

Query: 356 KI 357
             
Sbjct: 475 DH 476


>gi|160933809|ref|ZP_02081197.1| hypothetical protein CLOLEP_02670 [Clostridium leptum DSM 753]
 gi|156867686|gb|EDO61058.1| hypothetical protein CLOLEP_02670 [Clostridium leptum DSM 753]
          Length = 491

 Score = 66.9 bits (162), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 60/351 (17%), Positives = 119/351 (33%), Gaps = 59/351 (16%)

Query: 57  NSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEE 116
           + + DAD++++       +A                  +++    LVV+ G  A    +E
Sbjct: 69  DDVLDADIVLIG--IFTFQAKRGYEL---------ARFVRKNSKALVVLGGLHASMNYQE 117

Query: 117 ILRRSPIVNVVVGPQTYYRLPELLER----------ARFGKRVVDTDYSVE----DKFER 162
             +    V +  G ++  +L + L R           R    +V T   V     D    
Sbjct: 118 AAQYCDYVLLGEGEESILKLIDCLRRDQEIDFPGVAYRNNDEIVCTGQCVPPHNIDIIPD 177

Query: 163 LSIVDGGYNRKRGVTAFLTI--QEGCDKFCTFC-VVPYTRGIEISRSLSQVVDEARKLI- 218
             ++          T +  +    GC   C +C VV +      +RS   VV++ R+ I 
Sbjct: 178 RDLLYHYRKMAGHNTVWPQVHASRGCPHNCDYCAVVRHFGRKVRTRSPENVVEDIRQAIA 237

Query: 219 --DNGV----CEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
             D G       + L   N  A R   +         +L ++       +      +   
Sbjct: 238 FHDQGHRRAAKILWLTDDNFFADRDWAV--------SVLNAIIRSGIRYQFTVQARYEVG 289

Query: 273 MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAIS 332
             D +++   +       + + ++   D   +S++++ T  E  + ++ I+  R  + + 
Sbjct: 290 FDDEMLELLKEAG-FCE-IAMGIEFLEDETFESLHKKSTYAEIVRSVENIQ--RHGLRVR 345

Query: 333 SDFIVGFP------GETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
             FIVG        GE   DF  + D+   +  +  F        GTP   
Sbjct: 346 GLFIVGADNHVKGVGERLADFVISHDICGVLIQSMYFV------PGTPVYK 390


>gi|116073887|ref|ZP_01471149.1| hypothetical protein RS9916_35592 [Synechococcus sp. RS9916]
 gi|116069192|gb|EAU74944.1| hypothetical protein RS9916_35592 [Synechococcus sp. RS9916]
          Length = 524

 Score = 66.9 bits (162), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 56/330 (16%), Positives = 119/330 (36%), Gaps = 37/330 (11%)

Query: 62  ADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRS 121
           A+L+V++   ++    + +   +   +            LLV V G  A +  +      
Sbjct: 66  AELVVISGMIVQ---KDDMQVQIREAKR---------RGLLVAVGGPYASSTPD--APEI 111

Query: 122 PIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAF-- 179
              +  V  +    LP+ +E  + G+R     +S E     ++           + A+  
Sbjct: 112 ADADFKVLDEGEITLPQFVEAIQRGER--SGRFSAEGDKPDVTATPVPRFDLLELDAYDS 169

Query: 180 --LTIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR 236
             +    GC   C FC +    G +  +++  Q+V E ++L + G      L  +     
Sbjct: 170 MSVQFSRGCPFNCEFCDIIVLYGRKPRTKTPEQLVAELQRLYELGWRRSIFLVDD----- 224

Query: 237 GKGLDGEKCTFSDLLYSLSEIKGLVRLRYT----TSHPRDMSDCLIKAHGDLDVLMPYLH 292
                G K     LL  +   +      ++     S      + +++   +       + 
Sbjct: 225 --NFIGNKRNAKLLLPQIKTWQEERGYPFSFATEASVDLADDEEMMRMMHEAR--FESVF 280

Query: 293 LPVQSGSDRILKSMNR-RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351
           L +++  +  L++  + ++T       +DRI +    I + + FI+GF GE D   +  +
Sbjct: 281 LGIETPDESSLETARKVQNTRNPLDAAVDRITAN--GIRVMAGFIIGFDGEKDGAGKRIV 338

Query: 352 DLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           D V + G   A          T   + LE+
Sbjct: 339 DFVTRTGIPAAMMGMLQALPNTALWHRLEK 368


>gi|297530868|ref|YP_003672143.1| cobalamin B12-binding domain protein [Geobacillus sp. C56-T3]
 gi|297254120|gb|ADI27566.1| cobalamin B12-binding domain protein [Geobacillus sp. C56-T3]
          Length = 590

 Score = 66.9 bits (162), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 63/368 (17%), Positives = 124/368 (33%), Gaps = 42/368 (11%)

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +     +     K   ++++V  G     +  E + R P ++ +V  +      +LL   
Sbjct: 67  IEETIKVVKLLKKAAPNIVIVAGGPEVSYDVREWMERVPELDFIVIGEGEETFKQLLFAL 126

Query: 144 RFGKRVVD-----------TDYSVEDKFERLSIVDGGYNRKRGVTA------FLTIQEGC 186
              K V D              + +    RL+ +   +     +        ++    GC
Sbjct: 127 EGRKEVADVAGLAFRDGDRIVMNPQRNKLRLADMPSPFRFPEDIPHLPNRIIYVETSRGC 186

Query: 187 DKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT 246
              C FC+     G        ++ D+ R L+ +G   I  + +  N  R   +D  +  
Sbjct: 187 PFSCQFCLSSIEVG-VRYFDREKIKDDLRYLMKHGARTIKFVDRTFNISRSYAMDMFRFL 245

Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAH-GDLDVLMPYLHLPVQSGSDRILKS 305
             +       + G V     T+    M   +I+    +    +    + VQS +D + + 
Sbjct: 246 IDEH------VPGTVFQFEITADI--MRPEVIEFLNKEAPPGLFRFEIGVQSTNDEVNRL 297

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           + R+    +  + +  I+     IA   D I G P E  + FR T + V  +   +    
Sbjct: 298 IMRKQNFAKLSRTVTMIKEG-GKIAQHLDLIAGLPEEDYNSFRKTFNDVFALRPEELQLG 356

Query: 366 KYSPRLGT--------PGSNMLEQVDENVKAERLLCLQKKLREQQVS------FNDACVG 411
                 GT         G   ++     V A  +L     +R +QV       +N   + 
Sbjct: 357 FLKLLRGTGLRLRAEEYGYVYMDHAPYEVLANNVLSFDDVIRIKQVEDVLEKYWNAHRMD 416

Query: 412 QIIEVLIE 419
           + IE L+ 
Sbjct: 417 ETIEYLVT 424


>gi|218440101|ref|YP_002378430.1| radical SAM protein [Cyanothece sp. PCC 7424]
 gi|218172829|gb|ACK71562.1| Radical SAM domain protein [Cyanothece sp. PCC 7424]
          Length = 539

 Score = 66.9 bits (162), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 54/339 (15%), Positives = 115/339 (33%), Gaps = 42/339 (12%)

Query: 56  VNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGE 115
           +     AD+++++  HI+     K+     R   L             VV G    A  E
Sbjct: 81  IKDYRWADVVIVSGMHIQRPQINKINDLAHRENKL------------TVVGGPSVSACPE 128

Query: 116 EILRRSPIVNVV-VGP--QTYYRLPELLERA--RFGKRVVDTDYSVEDKFERLSIVDGGY 170
                 P  +++ +G       ++ E ++R   R  K++           +         
Sbjct: 129 ----YYPDFDIIQIGELGDGTDQMIEYIDRYCQRPEKQICFETKDRLPLAQFPIPAYHLI 184

Query: 171 NRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVCEITLLG 229
           N ++     +    GC   C FC +P   G     ++  QV+ E   ++ +G        
Sbjct: 185 NLEQYFIGSVQFSSGCPYQCEFCDIPALYGRNPRLKTPEQVLRELDAMMASG-------- 236

Query: 230 QNVNAWRGKGLD--GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL 287
            N  A      +  G +   S+LL  L  I+   R  Y      + +  L ++   L+++
Sbjct: 237 -NPGAVYFVDDNFVGNRRALSELLPHL--IEWQKRNGYPVQFACEATLNLAQSPAILEMM 293

Query: 288 MPYL----HLPVQSGSDRILKSMNRRHT-AYEYRQIIDRIRSVRPDIAISSDFIVGFPGE 342
                      +++     L++++++   +    + I  + S    + + S  I+GF  +
Sbjct: 294 REAYFGTVFCGIETPEPEALQAISKQQNLSMPILEAIKILNSY--GLEVVSGIIIGFDTD 351

Query: 343 TDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           T +     ++ +                  TP    L+Q
Sbjct: 352 TLETGNRILEFIRLSNIPVLTINLLYALPKTPLWERLKQ 390


>gi|78188099|ref|YP_378437.1| Elongator protein 3/MiaB/NifB [Chlorobium chlorochromatii CaD3]
 gi|78170298|gb|ABB27394.1| Elongator protein 3/MiaB/NifB [Chlorobium chlorochromatii CaD3]
          Length = 461

 Score = 66.9 bits (162), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 42/303 (13%), Positives = 91/303 (30%), Gaps = 20/303 (6%)

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             +   R  + +         V++ G       EE        + +V  +       LL+
Sbjct: 75  RTIDATRAYEIADTFRAKGKKVILGGLHVSFNKEEARA---HADCIVCGEAENLWSTLLD 131

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTA--------FLTIQEGCDKFCTFC 193
            A       D D         +  +D     K              + I  GC   C+FC
Sbjct: 132 DAANNALKPDYDSKDFPSVTEIVPIDYAKIAKVSKREKVDGTKSIPIYITRGCPFECSFC 191

Query: 194 VVPYTRGIE-ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLY 252
           V P   G    ++    +  +  +         +   +       + L   K    + L 
Sbjct: 192 VTPNFTGKLYRAQKPDDLKRQIEEAKRVFFKANSKTAKPWFMLCDENLGVSKKRLWETLD 251

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH-- 310
            + E      + ++     +  +        +D     + +  +S     L++ N+ H  
Sbjct: 252 LIKECD----INFSVFFSINFLEDKQTVKKLVDAGCIMVLVGFESIKQSTLEAYNKGHVN 307

Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370
           +A ++ ++I+  R     + +  +F+V    ++ +D       V K           +P 
Sbjct: 308 SADKFSRLIEECRQA--GLNVQGNFLVNPALDSYEDMDDLAQFVSKNNIFMPIFQIITPY 365

Query: 371 LGT 373
            GT
Sbjct: 366 PGT 368


>gi|302343921|ref|YP_003808450.1| radical SAM domain protein [Desulfarculus baarsii DSM 2075]
 gi|301640534|gb|ADK85856.1| Radical SAM domain protein [Desulfarculus baarsii DSM 2075]
          Length = 669

 Score = 66.9 bits (162), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 35/202 (17%), Positives = 71/202 (35%), Gaps = 28/202 (13%)

Query: 179 FLTIQEGCDK-FCTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWR 236
            L    GC    CTFC +        S+S  +++DE   L    GV    L    ++   
Sbjct: 295 MLETSRGCWWGRCTFCGLNGCGNRYRSKSPGRIIDEIETLAQRFGVRRFGLTDTVIS--- 351

Query: 237 GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQ 296
                  K  + ++L  L++     R +       ++    ++        + ++   ++
Sbjct: 352 -------KAFWKEVLPRLAQADAGDRCQLFFETRSNLDRQQVELLAAAG--VRWVQPGIE 402

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL--- 353
               R+L  M++     +  +++   R     I +    +VGFPGE D   + T      
Sbjct: 403 GLHPRMLALMDKGVGVMDNVRMLRLCRQA--GIFVIWHLLVGFPGEDDAWHQETARWLPL 460

Query: 354 ---------VDKIGYAQAFSFK 366
                    V +I Y +   ++
Sbjct: 461 IHHLQPVQGVKRIRYDRFCQYQ 482


>gi|261419162|ref|YP_003252844.1| cobalamin B12-binding domain protein [Geobacillus sp. Y412MC61]
 gi|319765979|ref|YP_004131480.1| cobalamin B12-binding domain protein [Geobacillus sp. Y412MC52]
 gi|261375619|gb|ACX78362.1| cobalamin B12-binding domain protein [Geobacillus sp. Y412MC61]
 gi|317110845|gb|ADU93337.1| cobalamin B12-binding domain protein [Geobacillus sp. Y412MC52]
          Length = 590

 Score = 66.9 bits (162), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 63/368 (17%), Positives = 124/368 (33%), Gaps = 42/368 (11%)

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +     +     K   ++++V  G     +  E + R P ++ +V  +      +LL   
Sbjct: 67  IEETIKVVKLLKKAAPNIVIVAGGPEVSYDVREWMERVPELDFIVIGEGEETFKQLLFAL 126

Query: 144 RFGKRVVD-----------TDYSVEDKFERLSIVDGGYNRKRGVTA------FLTIQEGC 186
              K V D              + +    RL+ +   +     +        ++    GC
Sbjct: 127 EGRKEVADVAGLAFRDGDRIVMNPQRNKLRLADMPSPFRFPEDIPHLPNRIIYVETSRGC 186

Query: 187 DKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT 246
              C FC+     G        ++ D+ R L+ +G   I  + +  N  R   +D  +  
Sbjct: 187 PFSCQFCLSSIEVG-VRYFDREKIKDDLRYLMKHGARTIKFVDRTFNISRSYAMDMFRFL 245

Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAH-GDLDVLMPYLHLPVQSGSDRILKS 305
             +       + G V     T+    M   +I+    +    +    + VQS +D + + 
Sbjct: 246 IDEH------VPGTVFQFEITADI--MRPEVIEFLNKEAPPGLFRFEIGVQSTNDEVNRL 297

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           + R+    +  + +  I+     IA   D I G P E  + FR T + V  +   +    
Sbjct: 298 IMRKQNFAKLSRTVTMIKEG-GKIAQHLDLIAGLPEEDYNSFRKTFNDVFALRPEELQLG 356

Query: 366 KYSPRLGT--------PGSNMLEQVDENVKAERLLCLQKKLREQQVS------FNDACVG 411
                 GT         G   ++     V A  +L     +R +QV       +N   + 
Sbjct: 357 FLKLLRGTGLRLRAEEYGYVYMDHAPYEVLANNVLSFDDVIRIKQVEDVLEKYWNAHRMD 416

Query: 412 QIIEVLIE 419
           + IE L+ 
Sbjct: 417 ETIEYLVT 424


>gi|138894501|ref|YP_001124954.1| Mg-protoporphyrin IX monomethyl ester oxidativecyclase [Geobacillus
           thermodenitrificans NG80-2]
 gi|134266014|gb|ABO66209.1| Mg-protoporphyrin IX monomethyl ester oxidativecyclase [Geobacillus
           thermodenitrificans NG80-2]
          Length = 597

 Score = 66.9 bits (162), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 64/368 (17%), Positives = 118/368 (32%), Gaps = 42/368 (11%)

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL--- 140
           +     +     K   D+ VVV G     +  E + R P  + +V  +      +LL   
Sbjct: 74  IEETIKVVKMLKKVAPDVTVVVGGPEVSYDVREWMERVPEFDFIVIGEGEETFKQLLFAL 133

Query: 141 -----------ERARFGKRVVDTDYSVEDKFERLSIV---DGGYNRKRGVTAFLTIQEGC 186
                         R G R+V      + +   +                  ++    GC
Sbjct: 134 NGDGNVSDVAGLAFRDGDRIVVNPQRNKIRLADMPSPFRFPEDLPHLPNRIVYVETSRGC 193

Query: 187 DKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT 246
              C FC+     G        ++ D+ R L+ +G   I  + +  N  R   +D  +  
Sbjct: 194 PFSCQFCLSSIEVG-VRYFDREKIKDDLRYLMQHGARTIKFVDRTFNISRSYAMDMFRFL 252

Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL-DVLMPYLHLPVQSGSDRILKS 305
             +       + G V     T+    M   +I+   +     +    + VQS +D + + 
Sbjct: 253 IDEH------VPGTVFQFEITADI--MRPEVIEFLNNEAPPGLFRFEIGVQSTNDEVNRL 304

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           + R+    +  + +  I+     I    D I G P E  D FR T + V  +   +    
Sbjct: 305 IMRKQNFAKLSRTVTMIKEG-GKITQHLDLIAGLPEEDYDSFRKTFNDVFALRPEELQLG 363

Query: 366 KYSPRLGT--------PGSNMLEQVDENVKAERLLCLQKKLREQQVS------FNDACVG 411
                 GT         G   ++     V    +L     +R +QV       +N   + 
Sbjct: 364 FLKLLRGTGLRLRAHEYGYVYMDHAPYEVLRNNVLSFDDVIRIKQVEDVLEKYWNAHRMD 423

Query: 412 QIIEVLIE 419
           + IE L+ 
Sbjct: 424 ETIEYLVT 431


>gi|56419477|ref|YP_146795.1| Mg-protoporphyrin IX monomethyl ester oxidative cyclase
           [Geobacillus kaustophilus HTA426]
 gi|56379319|dbj|BAD75227.1| Mg-protoporphyrin IX monomethyl ester oxidative cyclase
           [Geobacillus kaustophilus HTA426]
          Length = 590

 Score = 66.9 bits (162), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 63/368 (17%), Positives = 124/368 (33%), Gaps = 42/368 (11%)

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +     +     K   ++++V  G     +  E + R P ++ +V  +      +LL   
Sbjct: 67  IEETIKVVKLLKKAAPNIVIVAGGPEVSYDVREWMERVPELDFIVIGEGEETFKQLLFAL 126

Query: 144 RFGKRVVD-----------TDYSVEDKFERLSIVDGGYNRKRGVTA------FLTIQEGC 186
              K V D              + +    RL+ +   +     +        ++    GC
Sbjct: 127 EGRKEVADVAGLAFRDGDRIVMNPQRNKLRLADMPSPFRFPEDIPHLPNRIIYVETSRGC 186

Query: 187 DKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT 246
              C FC+     G        ++ D+ R L+ +G   I  + +  N  R   +D  +  
Sbjct: 187 PFSCQFCLSSIEVG-VRYFDREKIKDDLRYLMKHGARTIKFVDRTFNISRSYAMDMFRFL 245

Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAH-GDLDVLMPYLHLPVQSGSDRILKS 305
             +       + G V     T+    M   +I+    +    +    + VQS +D + + 
Sbjct: 246 IDEH------VPGTVFQFEITADI--MRPEVIEFLNKEAPPGLFRFEIGVQSTNDEVNRL 297

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           + R+    +  + +  I+     IA   D I G P E  + FR T + V  +   +    
Sbjct: 298 IMRKQNFAKLSRTVTMIKEG-GKIAQHLDLIAGLPEEDYNSFRKTFNDVFALRPEELQLG 356

Query: 366 KYSPRLGT--------PGSNMLEQVDENVKAERLLCLQKKLREQQVS------FNDACVG 411
                 GT         G   ++     V A  +L     +R +QV       +N   + 
Sbjct: 357 FLKLLRGTGLRLRAEEYGYVYMDHAPYEVLANNVLSFDDVIRIKQVEDVLEKYWNAHRMD 416

Query: 412 QIIEVLIE 419
           + IE L+ 
Sbjct: 417 ETIEYLVT 424


>gi|153953533|ref|YP_001394298.1| coproporphyrinogen III oxidase [Clostridium kluyveri DSM 555]
 gi|219854155|ref|YP_002471277.1| hypothetical protein CKR_0812 [Clostridium kluyveri NBRC 12016]
 gi|146346414|gb|EDK32950.1| Oxygen independent coproporphyrinogen III oxidase-related protein
           [Clostridium kluyveri DSM 555]
 gi|219567879|dbj|BAH05863.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 383

 Score = 66.9 bits (162), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 42/213 (19%), Positives = 85/213 (39%), Gaps = 16/213 (7%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C K C +C  P   G E +  +      A+ +   G  EI      +    G        
Sbjct: 22  CKKKCFYCDFPSYSGKE-NVMMDYSKVLAKDIETMGNREI----DTIFIGGGTPTYLSLD 76

Query: 246 TFSDLLYSLSEIKGLVRLRYTTS-HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304
            + ++  S+ ++     L +T   +P   +   +    ++   +  L + +Q+  + +LK
Sbjct: 77  AWYNIDKSIQKLNTTEDLEFTVEGNPGTFTKEKLIFLRNMG--VNRLSIGLQAWQNDMLK 134

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIA-ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           ++ R HT  ++ +     RS+    + I+ D I G PG+T + +R  ++ V +I      
Sbjct: 135 NLGRVHTLEDFLEGYKMARSL--GFSNINVDLIFGLPGQTLEIWRDCLENVVEISPEHIS 192

Query: 364 SFKYSPRLGTPGSNMLEQ----VDENVKAERLL 392
            +      GTP  N+  +    +    K ER +
Sbjct: 193 CYSLIVEEGTPFYNLYGENKLNLPPE-KEERAM 224


>gi|196247898|ref|ZP_03146600.1| cobalamin B12-binding domain protein [Geobacillus sp. G11MC16]
 gi|196212682|gb|EDY07439.1| cobalamin B12-binding domain protein [Geobacillus sp. G11MC16]
          Length = 590

 Score = 66.9 bits (162), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 64/368 (17%), Positives = 118/368 (32%), Gaps = 42/368 (11%)

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL--- 140
           +     +     K   D+ VVV G     +  E + R P  + +V  +      +LL   
Sbjct: 67  IEETIKVVKMLKKVAPDVTVVVGGPEVSYDVREWMERVPEFDFIVIGEGEETFKQLLFAL 126

Query: 141 -----------ERARFGKRVVDTDYSVEDKFERLSIV---DGGYNRKRGVTAFLTIQEGC 186
                         R G R+V      + +   +                  ++    GC
Sbjct: 127 NGDGNVSDVAGLAFRDGDRIVVNPQRNKIRLADMPSPFRFPEDLPHLPNRIVYVETSRGC 186

Query: 187 DKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT 246
              C FC+     G        ++ D+ R L+ +G   I  + +  N  R   +D  +  
Sbjct: 187 PFSCQFCLSSIEVG-VRYFDREKIKDDLRYLMQHGARTIKFVDRTFNISRSYAMDMFRFL 245

Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL-DVLMPYLHLPVQSGSDRILKS 305
             +       + G V     T+    M   +I+   +     +    + VQS +D + + 
Sbjct: 246 IDEH------VPGTVFQFEITADI--MRPEVIEFLNNEAPPGLFRFEIGVQSTNDEVNRL 297

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           + R+    +  + +  I+     I    D I G P E  D FR T + V  +   +    
Sbjct: 298 IMRKQNFAKLSRTVTMIKEG-GKITQHLDLIAGLPEEDYDSFRKTFNDVFALRPEELQLG 356

Query: 366 KYSPRLGT--------PGSNMLEQVDENVKAERLLCLQKKLREQQVS------FNDACVG 411
                 GT         G   ++     V    +L     +R +QV       +N   + 
Sbjct: 357 FLKLLRGTGLRLRAHEYGYVYMDHAPYEVLRNNVLSFDDVIRIKQVEDVLEKYWNAHRMD 416

Query: 412 QIIEVLIE 419
           + IE L+ 
Sbjct: 417 ETIEYLVT 424


>gi|110598050|ref|ZP_01386329.1| Radical SAM [Chlorobium ferrooxidans DSM 13031]
 gi|110340309|gb|EAT58803.1| Radical SAM [Chlorobium ferrooxidans DSM 13031]
          Length = 463

 Score = 66.9 bits (162), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 44/305 (14%), Positives = 96/305 (31%), Gaps = 24/305 (7%)

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
             +   R+ + +         V++ G       EE    +P  + +V  +       +L+
Sbjct: 75  RTIDAKRSYEIADEFRKRGQKVILGGLHVSFNAEE---AAPHADTLVCGEAENLWQTILD 131

Query: 142 RARFG--------KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC 193
                        K        V   +ER++            +  + I  GC   C+FC
Sbjct: 132 DVASNTLKASYNSKDFPQVQEIVPLDYERIAKASKRTKVDGTKSIPIYITRGCPFECSFC 191

Query: 194 VVPYTRGIE-ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLY 252
           V P   G    ++    ++ +            +   +       + L   K    + L 
Sbjct: 192 VTPNFTGKLYRAQKPEDLIKQIETAKRVFFKAKSKSSKPWFMLCDENLGVSKKRLWETLD 251

Query: 253 SLSE--IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
            + E  I   V         ++    L+ A          + +  +S     L++ N+ H
Sbjct: 252 LIKECNINFSVFFSINFLEDKETVKKLVAA------GCIMVLVGFESIKQSTLEAYNKGH 305

Query: 311 --TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
             +A ++ ++I+  R     + +  +F+V    ++ +D    +  V K           +
Sbjct: 306 VNSADQFARLIEECRQA--GLNVQGNFLVNPDLDSYEDMDDLVKFVSKNNVFMPIFQIIT 363

Query: 369 PRLGT 373
           P  GT
Sbjct: 364 PYPGT 368


>gi|254491697|ref|ZP_05104876.1| radical SAM domain protein [Methylophaga thiooxidans DMS010]
 gi|224463175|gb|EEF79445.1| radical SAM domain protein [Methylophaga thiooxydans DMS010]
          Length = 503

 Score = 66.9 bits (162), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 51/346 (14%), Positives = 105/346 (30%), Gaps = 36/346 (10%)

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT---YYRLPELL 140
           +  I ++     +     ++++ G       +          V+ GP          +LL
Sbjct: 72  VQEISDIVAVIKQIAPQTIIILGGPEVGHHPDVPSVCEQADFVISGPGEKSFRDLCEQLL 131

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC------- 193
              R  ++ ++   +  D    L          R    ++    GC   C FC       
Sbjct: 132 TGNRPEQKFIEGQATKLDDL-VLPYAFYNDEDIRNRLIYVEASRGCPFKCEFCLSALDKT 190

Query: 194 VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS 253
             P+         L   +DE  KL   GV     + +  N            +   L + 
Sbjct: 191 ATPFL--------LDPFLDEMEKLWQRGVRNFKFIDRTFNLKV-------TTSIRILEFF 235

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
           L  +   + L +    P ++ D L               + +Q+    I   ++R+    
Sbjct: 236 LERMSDDLYLHFEVV-PDNLPDKLKDVLKRFPPQSLQFEIGIQTFDPAIQTLISRKQNNA 294

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
           +  + I  +R       + +D I G P +T D+F  + D +  +   +          G 
Sbjct: 295 KTCENIRWLREHT-GAHLHTDLIFGLPSDTLDNFADSFDQLVALNPHEIQLGILKRLRGA 353

Query: 374 PGS--------NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVG 411
           P +            Q   N+ + R +   +  R  + +     +G
Sbjct: 354 PLNRHTEDYDLRYNPQPPYNILSTRDISFMQMQRVNRFARFWDMIG 399


>gi|157363007|ref|YP_001469774.1| radical SAM domain-containing protein [Thermotoga lettingae TMO]
 gi|157313611|gb|ABV32710.1| Radical SAM domain protein [Thermotoga lettingae TMO]
          Length = 559

 Score = 66.9 bits (162), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 63/349 (18%), Positives = 119/349 (34%), Gaps = 49/349 (14%)

Query: 79  KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPE 138
           + Y+ L R + L              +     +   E+ ++ +  V + +    + +   
Sbjct: 182 EKYADLDRCKQLPGVVWWTSRKPESGIELPSFEEISEDKIKYAEAVKLQLSSTDHLKNVV 241

Query: 139 LLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRK--------RGVTAFLTIQ------E 184
           L ++      V +      D+ E  ++    + RK          V A  T+Q       
Sbjct: 242 LYQKQDNRYIVQNPPEKPLDQTELDNLYLMDFERKTHPYYESMGHVPAIETVQFSITSVR 301

Query: 185 GCDKFCTFCVVP-YTRGIEISRSLSQVVDEARKLIDN----------GVCEITLLGQNVN 233
           GC   C+FC +  +     +SRS   +++EARK+  +          G     + G + N
Sbjct: 302 GCFGRCSFCALSCHQTAHVVSRSDESIIEEARKITRHPDFKGIITDVGGPTANMYGTSCN 361

Query: 234 AWRGKG--------------LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM---SDC 276
               KG                     + DLL  L +IKG+  +  ++    D+      
Sbjct: 362 VRDSKGTCRKFCLHPEICSSTQMNHAKYIDLLEKLRQIKGVRHVFVSSGIRHDLALSDPE 421

Query: 277 LIKAHGDLDVLMP-YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI----RSVRPDIAI 331
                 +L    P  L L  +     +LK M +      + +   +     R    +  +
Sbjct: 422 GEYFIKELVNYTPGQLKLAPEHAHPYVLKLMRKP-PVELFLEFKRKFEKHARHQGKNRYV 480

Query: 332 SSDFIVGFPGETDDDFRATMDLV-DKIGYAQAFSFKYSPRLGTPGSNML 379
              FIV  PGET  +     + + +K+GY       ++P  GT  + M 
Sbjct: 481 IGYFIVAHPGETLRENNYLKNFINEKLGYHPQQIQIFTPSPGTISTAMY 529


>gi|146304701|ref|YP_001192017.1| radical SAM domain-containing protein [Metallosphaera sedula DSM
           5348]
 gi|145702951|gb|ABP96093.1| Radical SAM domain protein [Metallosphaera sedula DSM 5348]
          Length = 503

 Score = 66.9 bits (162), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 45/281 (16%), Positives = 85/281 (30%), Gaps = 19/281 (6%)

Query: 92  NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVD 151
               K G  ++            E+++ +  I  +V G                      
Sbjct: 136 QEAKKRGVKMIAGGPSVWQWLWREDMIEKVGIDTLVDGEAERVIGKLAQMILDNEDLPRY 195

Query: 152 TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVV 211
              S ED      I D       G+   + I  GC + C FC V           L ++ 
Sbjct: 196 MYVSGEDVPGIEDIPDIKGASVNGL---IEIMRGCARSCRFCSVTL--RPTRYYPLEKIE 250

Query: 212 DEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG---LVRLRYTTS 268
            E +  +  GV    +   +V  +   G+         L   + +               
Sbjct: 251 RELQVNVRAGVRHGVIHSDDVLFYGAVGILPRPEPLIKLHKMVKKYYKTIAWSHASLAAI 310

Query: 269 HPRDMSDCLIKAHGDL-----DVLMPYLHLPVQSGSDRILKSMN----RRHTAYEYRQII 319
              +    LI    ++           + + +++GS R+ K +       +    Y + +
Sbjct: 311 RFSEEKYGLISKLSEIIYENGSQNYLGVEVGIETGSPRLAKEIMPAKSAPYKPESYPETV 370

Query: 320 DRIRSVR--PDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
                +    +I  +   IVG P E +DD   T++LVD + 
Sbjct: 371 AEAFKIMHEHNIIPAGTMIVGLPEEKEDDVIRTIELVDNLK 411


>gi|282863610|ref|ZP_06272668.1| Radical SAM domain protein [Streptomyces sp. ACTE]
 gi|282561311|gb|EFB66855.1| Radical SAM domain protein [Streptomyces sp. ACTE]
          Length = 601

 Score = 66.9 bits (162), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 41/258 (15%), Positives = 77/258 (29%), Gaps = 28/258 (10%)

Query: 162 RLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNG 221
            L      Y +  G  A +    GC   C FC             +  + D   +L    
Sbjct: 241 ELHPAHFVYPKSDGTAAGIHPTLGCRHSCDFCN--LGVPPFRHAPIGMLKDYIDRLEAQK 298

Query: 222 VCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS-----LSEIKGLVRLRYTTSHPRDMSDC 276
           +  I +       +R +    +  +      +     ++ I G +R    T+   +    
Sbjct: 299 IRRIIISSPTFTQYRHRRELLDHISAYARRAAAEGETVTTIIGSIRADELTADYLESVTE 358

Query: 277 L-----IKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAI 331
           L     +    +LD     + +  +  S  ++    +          I+  R  +    +
Sbjct: 359 LEEFGHLFTELNLDQARGIITIAPEWASPDLVAMYGKTQRRERVDNAIELCRKSKDVNTV 418

Query: 332 SSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS---------FKYSPRLGTPGSNMLEQV 382
              FIVG PGE D D  A  D    +   +             ++ P+ GT    +    
Sbjct: 419 MLYFIVGAPGERDADRLAIADYAQDV-LDRLGHPDGTVIVKLHQFMPKPGTASQRLRMSD 477

Query: 383 DENV------KAERLLCL 394
            + V        +RL  L
Sbjct: 478 PDLVHTYTAQIEDRLRDL 495


>gi|119488025|ref|ZP_01621469.1| hypothetical protein L8106_11527 [Lyngbya sp. PCC 8106]
 gi|119455314|gb|EAW36453.1| hypothetical protein L8106_11527 [Lyngbya sp. PCC 8106]
          Length = 533

 Score = 66.9 bits (162), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 54/330 (16%), Positives = 108/330 (32%), Gaps = 32/330 (9%)

Query: 58  SMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEI 117
             + ADL++++   +++         + +++  K          LV V G    +  ++ 
Sbjct: 62  EWESADLVIISAMIVQKS------DLIYQVKAAKQRGK------LVAVGGPYPTSVPKDA 109

Query: 118 LRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT 177
           L      + ++  +    LP  L+  + G+         +       I            
Sbjct: 110 LDA--GADFLILDEGEMTLPLFLDALQRGETSGVFRSEEKPNITLTPIPRYDLLDLSAYD 167

Query: 178 AF-LTIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW 235
           +  +    GC   C FC +    G +  ++  SQ++ E   L + G      +  +    
Sbjct: 168 SMSVQFSRGCPFQCEFCDIITLYGRKPRTKLPSQLLKELDCLYELGWRRGIFMVDD---- 223

Query: 236 RGKGLDGEKCTFSDLLYSL----SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL 291
                 G K     LL  L    +E K   R     S      + L+      +     +
Sbjct: 224 ---NFIGNKRNVKLLLKELKVWQAEHKYPFRFNTEASIDLAADEELMDLMLQCN--FDAV 278

Query: 292 HLPVQSGSDRILKSMNRR-HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
            L +++  +  LK   +  +T       ID++  V   +   + FI+GF GE        
Sbjct: 279 FLGIETPDEDSLKLTKKFQNTRSSLSDSIDKVMQV--GLRPMAGFIIGFDGEKQGAGERV 336

Query: 351 MDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++ V++     A          T   N LE
Sbjct: 337 IEFVEQAAIPTAMFGMLQALPNTALWNRLE 366


>gi|206559108|ref|YP_002229868.1| lipoyl synthase [Burkholderia cenocepacia J2315]
 gi|198035145|emb|CAR51019.1| lipoic acid synthetase [Burkholderia cenocepacia J2315]
          Length = 330

 Score = 66.9 bits (162), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 78/221 (35%), Gaps = 12/221 (5%)

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
           + +  ++++    E  S  + G    +G   F+ + + C + C FC V + R   +    
Sbjct: 65  KTILREHNLHTVCEEASCPNIGECFGKGTATFMIMGDKCTRRCPFCDVGHGRPDPL--DA 122

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
            +  + AR +    +  + +   +    R    DG    F + +  + E     R+   T
Sbjct: 123 DEPKNLARTIAALKLKYVVITSVD----RDDLRDGGAAHFVECIREVREQSPDTRIEILT 178

Query: 268 SHPRDMSDCLIKAH-GDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
              R   D  I         +M +    V     R+ K            +++   ++  
Sbjct: 179 PDFRGRLDRAISILNAAPPDVMNHNLETV----PRLYKEARPGSDYAHSLKLLKDFKAQH 234

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           PD+A  S  +VG  GET+++    M  +           +Y
Sbjct: 235 PDVATKSGLMVGL-GETEEEILQVMRDLRAHDVDMLTIGQY 274


>gi|253699307|ref|YP_003020496.1| hypothetical protein GM21_0664 [Geobacter sp. M21]
 gi|251774157|gb|ACT16738.1| conserved hypothetical protein [Geobacter sp. M21]
          Length = 318

 Score = 66.9 bits (162), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 40/205 (19%), Positives = 62/205 (30%), Gaps = 16/205 (7%)

Query: 183 QEGCDKFCTFCVVPYTRGIE-ISR-SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL 240
             G    C +C        E +S   + +     +           L  Q    +  K  
Sbjct: 44  SRG-TGGCIYCDNSSFSPKETVSVIPIEE-----QMAAGMAYHRARLASQKFIVYFQKFT 97

Query: 241 DGEKC--TFSDLLYSLSEIKGLVRLRYTT-SHPRDMSDC-LIKAHGDLDVLMPYLHLPVQ 296
           +         DL         +V +   T     D     L+        +   + L +Q
Sbjct: 98  NTYAPVEKLDDLYRRALSHPDVVGISVGTRPDSIDDDAVALLTELARDRYVC--VELGLQ 155

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
           S  D IL  +NR H+  EY   +DR+      I I +  I GFPGE    F     L+  
Sbjct: 156 SIDDAILTRINRGHSFAEYLSAVDRLAGR--GIDICTHLIYGFPGEKRSGFVKGARLISS 213

Query: 357 IGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +        +     GT  + M   
Sbjct: 214 LPVTSVKLHQLHAVEGTKLAQMYRD 238


>gi|144900354|emb|CAM77218.1| B12-binding:Radical SAM [Magnetospirillum gryphiswaldense MSR-1]
          Length = 550

 Score = 66.9 bits (162), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 60/322 (18%), Positives = 100/322 (31%), Gaps = 52/322 (16%)

Query: 88  RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR--- 144
           R L N+  +   D ++VV G    A  E  LR  P ++V V  +    L EL+ R     
Sbjct: 140 RELINAIRQARPDAIIVVGGEHVTALPELTLRDCPAIDVAVTGEGELTLLELVHRIANDR 199

Query: 145 --------------------FGKRVVDTDYSVEDKFERLSIVDGGYNRKR-----GVTAF 179
                               FGKRV D +      +    + +            G    
Sbjct: 200 SHEDMDGLCFIRDGQFVNNGFGKRVADFENLPRPAWHLCPVENYFSGMWSMGIGYGRNMI 259

Query: 180 LTIQEGCDKFCTFCVVPYTR-GIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRG 237
           +    GC   CTFC  P       + R  + VVDE   L+++ G   I          + 
Sbjct: 260 VLATRGCPYQCTFCSNPVMWTTRYLMRPPAHVVDEIEWLVNSYGANSIDFADLTAIVKKE 319

Query: 238 KGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQS 297
             ++         L+   ++    R     +    +                +L    +S
Sbjct: 320 WVIEFCAELKRRNLHINWQLPSGTRSEALDAETVQIIHD---------AGCKFLVYAPES 370

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSD----FIVGFPGETDDDFRATMDL 353
           GS   L  + ++       ++    RS+   ++         I+GFP E       +M  
Sbjct: 371 GSQDTLDRIKKK------IKLPTITRSMAAAVSAGHTTKACMIIGFPHERRKHVFQSMLF 424

Query: 354 VDK---IGYAQAFSFKYSPRLG 372
             K   IG        ++P  G
Sbjct: 425 AAKLGIIGVDDCNISPFTPYPG 446


>gi|119476352|ref|ZP_01616703.1| hypothetical protein GP2143_07874 [marine gamma proteobacterium
           HTCC2143]
 gi|119450216|gb|EAW31451.1| hypothetical protein GP2143_07874 [marine gamma proteobacterium
           HTCC2143]
          Length = 715

 Score = 66.9 bits (162), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 49/293 (16%), Positives = 90/293 (30%), Gaps = 45/293 (15%)

Query: 132 TYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTA------------- 178
                  L++R    +  ++         E  ++ D  Y R    +              
Sbjct: 296 NPGNARALVQRHGEREVWLNPPPIPLTTEEMDAVFDLPYQRVPHPSYGDAKIPAFDMIRF 355

Query: 179 FLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDN--GVCEIT--LLGQNVN 233
            + I  GC   CTFC +    G  I SRS   ++ E   + D   G   +   L G   N
Sbjct: 356 SVNIMRGCFGGCTFCSITEHEGRIIQSRSKESILREVENIRDKTPGFTGVISDLGGPTAN 415

Query: 234 AWR----------------------GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPR 271
            WR                       K LD ++    DL     E+ G+ ++   +    
Sbjct: 416 MWRLNCKSKTIEQNCRRLSCVYPNICKSLDTDQMPLVDLYRETRELPGIKKVLIASGLRY 475

Query: 272 DMSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRR--HTAYEYRQIIDRIR-SVR 326
           D++    +   +L    +  YL +  +      L  M +    T   ++++ ++      
Sbjct: 476 DLAVETPEYVRELVTHHVGGYLKIAPEHTEGGPLSKMMKPGMGTYDRFKKMFEKYSLEAG 535

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
               +   FI   PG TD+D       +    +       + P      + M 
Sbjct: 536 KKQYLIPYFIAAHPGTTDEDMMNLALWLKSNDFRADQVQAFYPSPMATATAMY 588


>gi|189425263|ref|YP_001952440.1| radical SAM protein [Geobacter lovleyi SZ]
 gi|189421522|gb|ACD95920.1| Radical SAM domain protein [Geobacter lovleyi SZ]
          Length = 426

 Score = 66.9 bits (162), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 52/294 (17%), Positives = 93/294 (31%), Gaps = 32/294 (10%)

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           +R  + +       + VV+ G       +E        + VV  +       LL   + G
Sbjct: 72  VRAYRIADRFRARGVPVVLGGIHPTVLPDE---AIKHADSVVLGEAEPVWAALLHDLQQG 128

Query: 147 KRVVDTDYSVEDKFERLSIVDGGY----NRKRGVTAFLTIQEGCDKFCTFC-VVPYTRGI 201
           +  +   Y V  + ++LSI    +     RK   T  L    GC   C FC V P+    
Sbjct: 129 Q--LQPFYQVLPEGDQLSIPWSRHDFLAPRKYLTTRTLQASRGCPYNCPFCTVTPHFGRT 186

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
              R    V+ E R         +  L  N+        +  K     +     +  G  
Sbjct: 187 FRYREPEDVLAELRSFKP---GLMVFLDDNILG----DPERAKPILRGMAGMGLKWGGQA 239

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY--RQII 319
            LR+           L++           + + ++S      +  N   TA +     +I
Sbjct: 240 NLRFA------EDPELVRLLAASG--CVGIFVGLESVDG---EYANLPKTAGKTSQADLI 288

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
            R+R     + + +  I GF       F  T+  ++    +       +P  GT
Sbjct: 289 KRVRDT--GVVVEASVIFGFDDHDAGVFERTVRYLENCAASLPTFHILTPYPGT 340


>gi|29347578|ref|NP_811081.1| coproporphyrinogen III oxidase [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|253572038|ref|ZP_04849442.1| coproporphyrinogen III oxidase [Bacteroides sp. 1_1_6]
 gi|29339479|gb|AAO77275.1| coproporphyrinogen III oxidase [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|251838218|gb|EES66305.1| coproporphyrinogen III oxidase [Bacteroides sp. 1_1_6]
          Length = 376

 Score = 66.5 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 47/233 (20%), Positives = 82/233 (35%), Gaps = 20/233 (8%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWR---GKGLD 241
           C   C +C          S            L     + +  L G+ V       G    
Sbjct: 11  CKTRCIYC---DFYSTTRS---ELKTHYVHTLCRELEMRKEYLKGEPVETIYFGGGTPSQ 64

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPR--DMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
            E+  F  +  ++ E  G+   R  T      D+S   +K    L      + + +Q+  
Sbjct: 65  LEEADFKHIFETIRENYGMEHCREITLEANPDDLSQEYLKMLSSLP--FNRISMGIQTFD 122

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
           D  L+ + RRH++    + + R R       IS D I G PGET + +   +    ++  
Sbjct: 123 DTTLQLLKRRHSSQTAVEAVRRCREAGFQ-NISIDLIYGLPGETKERWVNDLRQAIRLDV 181

Query: 360 AQAFSFKYSPRLGTPGSNMLEQ-----VDENVKAERLLCLQKKLREQQVSFND 407
               ++  +    TP  NML+Q     VDE+   +    L + L+       +
Sbjct: 182 EHISAYHLTYEEDTPIYNMLKQHQIEEVDEDSSLQFFTLLIEHLQNAGYEHYE 234


>gi|34497193|ref|NP_901408.1| Fe-S oxidoreductase family protein [Chromobacterium violaceum ATCC
           12472]
 gi|47606260|sp|Q7NX89|Y1738_CHRVO RecName: Full=UPF0313 protein CV_1738
 gi|34103050|gb|AAQ59413.1| probable Fe-S oxidoreductase family 2 [Chromobacterium violaceum
           ATCC 12472]
          Length = 758

 Score = 66.5 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 46/283 (16%), Positives = 89/283 (31%), Gaps = 38/283 (13%)

Query: 161 ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLID 219
              +  D        +   + I  GC   CTFC +    G  I SRS   ++ E  ++ D
Sbjct: 366 PHPAYGDAHIPAWEMIKYSVNIMRGCFGGCTFCSITEHEGRIIQSRSEESILHEIEEIRD 425

Query: 220 N----GVCEITLLGQNVNAWR----------------------GKGLDGEKCTFSDLLYS 253
                      L G   N +R                       + L+ +      L   
Sbjct: 426 KTPGFTGHISDLGGPTANMYRLSCKDPKIERSCRKLSCVFPDICENLNTDHSHLIQLYRK 485

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRRHT 311
              + G+ ++   +    D++    +   +L    +  YL +  +   D  L  M +   
Sbjct: 486 ARALPGVKKINIQSGLRYDLAVRSPEYIKELVQHHVGGYLKIAPEHTEDGPLSKMMKPGM 545

Query: 312 AYE--YRQIIDRI-RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK--IGYAQAFSFK 366
                ++++ +R  R    +  +   FI   PG +D+D       + K      Q  +F 
Sbjct: 546 GAYDKFKELFERFSRQAGKEQYLIPYFIAAHPGTSDEDMMNLALWLKKNNFRLDQVQTF- 604

Query: 367 YSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDAC 409
            +P      + M       +K  RL    +K+   +  +    
Sbjct: 605 -TPTPMAMATTMWHTRRNPLK--RLSRSSEKVDVVRDGYRRKL 644


>gi|325662864|ref|ZP_08151433.1| hypothetical protein HMPREF0490_02173 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325470916|gb|EGC74145.1| hypothetical protein HMPREF0490_02173 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 580

 Score = 66.5 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 45/286 (15%), Positives = 99/286 (34%), Gaps = 25/286 (8%)

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           L  +  L     K    + + + G     +   +L+R P V  V+  +      EL+   
Sbjct: 68  LDYVEQLVREAGKILPGVPIWIGGPEVSYDSPAVLQRLPEVFGVMKGEGEETFRELVHYY 127

Query: 144 RFGK---------------RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
             G                +++D  +       ++  V       +    +     GC  
Sbjct: 128 MEGGSLEKIDGITYRGEKGQILDNPWRPVMDLSKVPFVYHDMKDFQNKIVYYETSRGCPF 187

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS 248
            C++C+          R L  V  E +  +D  V ++  + +  N   G  ++  +    
Sbjct: 188 SCSYCL-SSVDKCLRFRDLELVKKELQFFLDEKVPQVKFVDRTFNCKHGHAMEIWRYL-- 244

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
                +    G+    +  S    +++  +     +   +  L + VQS + R ++ + R
Sbjct: 245 -----IEHDNGITNFHFEVSADL-LNEEELSLISQMRPGLIQLEIGVQSTNARTIREIRR 298

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
                E  +I+ +I +   ++    D I G P E  + FR++ + V
Sbjct: 299 TMKFEEVARIVRQI-NAYGNVHQHLDLIAGLPYEDYESFRSSFNDV 343


>gi|317484888|ref|ZP_07943778.1| radical SAM superfamily protein [Bilophila wadsworthia 3_1_6]
 gi|316923870|gb|EFV45066.1| radical SAM superfamily protein [Bilophila wadsworthia 3_1_6]
          Length = 866

 Score = 66.5 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 45/236 (19%), Positives = 85/236 (36%), Gaps = 26/236 (11%)

Query: 180 LTIQEGCDKFCTFCV--VPYTRGIEISRS-LSQVVDEARKLIDNGVCEITLLGQNVNAWR 236
           L I  GC + C FC   V Y    E S   L ++++    L D G  +++ L  +     
Sbjct: 253 LEIARGCTRGCRFCQAGVLYRPARERSLPNLEKILENC--LNDTGFDDVSFLALSTG--- 307

Query: 237 GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQ 296
                  K  F   +      +  + +   +     + D +++    +        L  +
Sbjct: 308 --DFSALKTLFLGTMDRCEAEQ--ISVSLPSLRVGSIDDDIMRRLAGIRR--TGATLAPE 361

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
           +GS R+   +N+  T       + ++        +   F++G PGET++D  A +DL  K
Sbjct: 362 AGSQRLRDIINKGVTEEGLMLHVRKLFEHGWQ-QVKLYFMIGLPGETEEDIEAIVDLCRK 420

Query: 357 IG----------YAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQ 402
                          A    + P+  TP      Q+      ER+  L+   R ++
Sbjct: 421 ARDAAGRGMPRLQVTAAISPFVPKSHTP-FQWEPQISLEQVRERVQYLRDAFRAEK 475


>gi|95930234|ref|ZP_01312972.1| Radical SAM [Desulfuromonas acetoxidans DSM 684]
 gi|95133697|gb|EAT15358.1| Radical SAM [Desulfuromonas acetoxidans DSM 684]
          Length = 431

 Score = 66.5 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 38/209 (18%), Positives = 82/209 (39%), Gaps = 16/209 (7%)

Query: 179 FLTIQEGCDKFCTFCVVPYTRGI-EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG 237
           F+    GC   C+FC +    G   +++ +  V+ + + L D  +  I L+  N      
Sbjct: 199 FVVTAFGCPFNCSFCCIAGQCGGQYLTQPIDAVIRDLQSLPD--IPFIRLVDANTF---- 252

Query: 238 KGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQS 297
               G      +L  ++ +  G+ +          +    +      ++ +  + +  + 
Sbjct: 253 ----GSPAHAEELYRAI-KQAGIKKNYLIDVRADTVVRHPVLLQQWKEIGLRSVVIGFEE 307

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
            +D+ L  MN++ T     + + R++ +  DI +  DFIV  P  + DDF      +   
Sbjct: 308 INDQRLAQMNKQGTQALNDEALLRLKEL--DITVVGDFIVD-PDYSHDDFDTLERYITSH 364

Query: 358 GYAQAFSFKYSPRLGTPGSN-MLEQVDEN 385
                     +P  GTP  + M +++ E+
Sbjct: 365 KIDLPMLTIMTPLPGTPIYDSMKKRITEH 393


>gi|313897552|ref|ZP_07831094.1| radical SAM protein YgiQ [Clostridium sp. HGF2]
 gi|312957504|gb|EFR39130.1| radical SAM protein YgiQ [Clostridium sp. HGF2]
          Length = 627

 Score = 66.5 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 44/269 (16%), Positives = 82/269 (30%), Gaps = 51/269 (18%)

Query: 156 VEDKFERLSIVDGGYNRKRGVTAFLTIQ------EGCDKFCTFCVVPYTRGIEIS-RSLS 208
             D    L      + R   + A   +Q       GC   C FC + + +G  IS RS  
Sbjct: 267 EMDFTYSLPYERTYHPRYTYIPAIEEVQFSIVSNRGCFGSCAFCAITHHQGRVISTRSRD 326

Query: 209 QVVDEARKLIDN----------GVCEITLLGQNVNAWRGKG---------------LDGE 243
            +VDEA+++ +           G        +  +  R  G               L  +
Sbjct: 327 SIVDEAKRITEMPNFKGYIHDVGGPTANFSREACDKQREYGACKNRECLFPKGCANLKVD 386

Query: 244 KCTFSDLLYSLSEIK---------GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP 294
              + ++L ++  +          G+           +  D L++ H     +   L + 
Sbjct: 387 HSRYLEILRAVRALPRVKKVFIRSGIRYDYLMYDKNDEFFDELVQHH-----ISGQLKVA 441

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA----ISSDFIVGFPGETDDDFRAT 350
            +  +  +L  M +      Y + +D+ +           I    +   PG         
Sbjct: 442 PEHINAAVLDKMGKP-RKELYLKFVDKFKQKNEQFNRNQFIVPYLMSSHPGSDLQAAIEL 500

Query: 351 MDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
              + KI Y       + P  GTP + M 
Sbjct: 501 ACYLKKIHYTPKQVQDFYPTPGTPATCMY 529


>gi|221636217|ref|YP_002524093.1| radical SAM domain protein [Thermomicrobium roseum DSM 5159]
 gi|221158086|gb|ACM07204.1| radical SAM domain protein [Thermomicrobium roseum DSM 5159]
          Length = 478

 Score = 66.5 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 36/215 (16%), Positives = 73/215 (33%), Gaps = 19/215 (8%)

Query: 176 VTAFLTIQEGCDKFCTFC-VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA 234
              +     GC   C  C VVP  RG   +   S V+ + R+ + +G   IT    +   
Sbjct: 192 PAGYTETTRGCHHTCAHCPVVPVYRGRFFAIPRSVVLADIRQQVAHGARHITFGDPD--- 248

Query: 235 WRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL-MPYLHL 293
                L+G   +   +  +L E    V   +T     +          +   L   ++  
Sbjct: 249 ----FLNGPTHSLR-ICRALHEEFPDVTFDFTA--RIEHIVRHRDLMSEFRRLGCLFVVS 301

Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
            V+  S+  L+++ + HT  +  + +    +    IA+    +   P  T DD+   +  
Sbjct: 302 AVELLSEPALQAIRKGHTRADVIEALRICDAA--GIALRPSLLPFTPWTTLDDYLDLLQF 359

Query: 354 VDKIGY-AQAFSFKYSPR----LGTPGSNMLEQVD 383
           ++         +   S R     G+      + + 
Sbjct: 360 IEDEELIEHVDAVHLSIRLLIPPGSALLEQPDVLP 394


>gi|298490093|ref|YP_003720270.1| radical SAM domain-containing protein ['Nostoc azollae' 0708]
 gi|298232011|gb|ADI63147.1| Radical SAM domain protein ['Nostoc azollae' 0708]
          Length = 532

 Score = 66.5 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 44/302 (14%), Positives = 97/302 (32%), Gaps = 30/302 (9%)

Query: 79  KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVV----------- 127
           +++  +G I+       K      V+V G       E++ +  P   ++           
Sbjct: 125 ELWRNIGLIKRGLKRAQKYHSQGRVLVGGGAVSVFYEQLGKSLPAGTIISVGEGETLLAK 184

Query: 128 --VGPQTYYRLPELLERARFGKRVVDTDYSVEDK-------FERLSIVDGGYNRKRGVTA 178
              G +       ++      +R++    +  +K        E +      Y + +    
Sbjct: 185 FLGGQEFRDERCYVVGENEPRERLIHEQPTPLEKTACNYDYIETIWPEFNYYLQDQDFYI 244

Query: 179 FLTIQEGCDKFCTFCVVPYTRGIEISR-SLSQVVDEARKLIDNGVCEITLL-GQNVNAWR 236
            +  + GC   C +CV     G ++      +VV E R+L + G+        Q + A R
Sbjct: 245 GIQTKRGCPHNCCYCVYTVVEGKQVRINPADEVVAEMRQLYNRGIRNFWFTDAQFIPARR 304

Query: 237 GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQ 296
                       +LL  + +               +++  L          M Y  + + 
Sbjct: 305 YID------DAVELLQKIVDSGMTDINWAAYIRADNLTPELCDLMAKTG--MNYFEIGIT 356

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
           SGS  +++ M   +      Q    ++S   +  +S ++      E  D  R T+    +
Sbjct: 357 SGSQELVRKMRMGYNLRTVLQNCRDLKSAGFNDMVSVNYSFNVIDERPDTIRQTIAYHRE 416

Query: 357 IG 358
           + 
Sbjct: 417 LE 418


>gi|170723824|ref|YP_001751512.1| hypothetical protein PputW619_4663 [Pseudomonas putida W619]
 gi|169761827|gb|ACA75143.1| Radical SAM domain protein [Pseudomonas putida W619]
          Length = 737

 Score = 66.5 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 46/298 (15%), Positives = 97/298 (32%), Gaps = 47/298 (15%)

Query: 117 ILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNR---K 173
           ++++   V+V   P       E            + DY     + R+     G  R    
Sbjct: 295 LVQKHGEVDVWFNPPPIPMTTE------------EMDYVFGMPYARIPHPAYGKERIPAY 342

Query: 174 RGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDN--GVCEIT--LL 228
             +   + I  GC   CTFC +    G  I +RS   ++ E  ++ D   G   +   L 
Sbjct: 343 EMIRFSVNIMRGCFGGCTFCSITEHEGRIIQNRSHESILHEIEEMRDKVPGFTGVVSDLG 402

Query: 229 GQNVNAWR----------------------GKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
           G   N +R                       + L+ +  +  +L      + G+ ++   
Sbjct: 403 GPTANMYRIACKSPEIEKHCRKPSCVFPGICENLNTDHSSLIELYRKARALPGVKKILIA 462

Query: 267 TSHPRDMSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRR--HTAYEYRQIIDRI 322
           +    D++    +   +L    +  YL +  +      L  M +    +   ++++ ++ 
Sbjct: 463 SGLRYDLAVESPEYVKELVTHHVGGYLKIAPEHTERGPLDKMMKPGIGSYDRFKRMFEKY 522

Query: 323 -RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            +    +  +   FI   PG TD+D       +   G+       + P      + M 
Sbjct: 523 SKEAGKEQYLIPYFIAAHPGTTDEDMMNLALWLKGNGFRADQVQAFYPSPMASATAMY 580


>gi|150007359|ref|YP_001302102.1| hypothetical protein BDI_0710 [Parabacteroides distasonis ATCC
           8503]
 gi|149935783|gb|ABR42480.1| putative Fe-S oxidoreductase [Parabacteroides distasonis ATCC 8503]
          Length = 616

 Score = 66.5 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 67/387 (17%), Positives = 129/387 (33%), Gaps = 70/387 (18%)

Query: 111 QAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGY 170
           +   ++ L+++     +      Y    +L++      VV+  +    + E  +  D  Y
Sbjct: 224 EECLKDKLKQAKNFRHIEEESNKYNASRILQKVGKQVIVVNPPFPPMTEAEIDASYDLPY 283

Query: 171 NRKRGVTA-------------FLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEAR- 215
            R                    + I  GC   C FC +   +G  I SRS   ++ E + 
Sbjct: 284 TRLPHPKYKGKVIPAFEMIKFSVNIHRGCFGGCAFCTISAHQGKFIASRSKESILKEVKA 343

Query: 216 --KLIDNGVCEITLLGQNVNAWRGKGLDGEKCT----------------------FSDLL 251
             ++ D       L G + N +R KG D   C                         D+ 
Sbjct: 344 ITEMPDFKGYLSDLGGPSANMYRMKGKDERICAKCKKPSCISPVVCKNLSADHTPLLDIY 403

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL---------------DVLMPYLHLPVQ 296
            ++  +  + +    +    D+   L+  + D                  +   L +  +
Sbjct: 404 KAVDRLPEIKKSFIGSGVRYDL---LLHRYADESLNKAAQTYTEELIARHVSGRLKVAPE 460

Query: 297 SGSDRILKSMNRRHTAYE--YRQIIDRI-RSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
              D +LK M +   +    +++I D++ R    +  +   FI   PG T+ D      +
Sbjct: 461 HTQDEVLKQMRKPSFSQFGQFKKIFDKVNRQYGLNQQLIPYFISSHPGCTEADMAELAVI 520

Query: 354 VDKIGYAQAFSFKYSPRLGTPGSNML-----EQVDENVKAERLLCLQKKLREQQVSFND- 407
              + +       ++P   T  + M          E V   R    QK  + Q   +   
Sbjct: 521 TKSLHFQLEQVQDFTPTPMTLATEMYYTGYHPYTLEKVYTARSKE-QKLAQRQFFFWYKP 579

Query: 408 ACVGQIIEVLIEKHGKEK--GKLVGRS 432
               QI++VL +K G++    KL GR+
Sbjct: 580 ESRRQIMQVL-QKMGRKDLIEKLFGRN 605


>gi|326775221|ref|ZP_08234486.1| Radical SAM domain protein [Streptomyces cf. griseus XylebKG-1]
 gi|326655554|gb|EGE40400.1| Radical SAM domain protein [Streptomyces cf. griseus XylebKG-1]
          Length = 629

 Score = 66.5 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 55/320 (17%), Positives = 97/320 (30%), Gaps = 39/320 (12%)

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG-------------- 129
           L +   L  +      D LVV  G     + E + RR P V+VV                
Sbjct: 72  LNQFGALAETYKSVRPDGLVVFGGTHVAHQAERVFRRFPEVDVVANGEGEFTFRDLLLAV 131

Query: 130 -----PQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVD--------GGYNRKRGV 176
                P    R+P +  R   G      +    D  + +                R    
Sbjct: 132 LDQKAPHDLARVPGISYRDEEGAVHTTAEAPRIDDLDMIPSPFLTGAIPLLDHRGRFPYD 191

Query: 177 TAFLTIQEGCDKFCTFCVVPYTRG-IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW 235
            A +    GC   C+FC      G      S  ++  E      + +  + L   N    
Sbjct: 192 VALMETNRGCPYKCSFCYWGGAVGQRMRDFSRERLRAELDLFGYHRIPTVVLCDSNFGMR 251

Query: 236 RGKGLDGEKCTFSDLLYSLSEIKGLVR-LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP 294
           +          F + L    E  G  R L  + +  +  +   I      +       + 
Sbjct: 252 QPD------AEFVEDLVRTREKYGFPRSLETSWAKNKSKTFHNIIRRMKSEGFQSSFTVA 305

Query: 295 VQSGSDRILKSMNRRHTA-YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
           +Q+  D  L+ M R +    E++++   + +    +   ++ I G PGET D F    D 
Sbjct: 306 LQTLDDTALRDMGRSNMRLNEWKELAAWLAA--EGLDAYAELIWGAPGETVDSFLTGYDQ 363

Query: 354 VDKIGYAQAFSFKYSPRLGT 373
           + +    +   +       T
Sbjct: 364 LSEH-VPRIAVYPLLLLPNT 382


>gi|224026723|ref|ZP_03645089.1| hypothetical protein BACCOPRO_03480 [Bacteroides coprophilus DSM
           18228]
 gi|224019959|gb|EEF77957.1| hypothetical protein BACCOPRO_03480 [Bacteroides coprophilus DSM
           18228]
          Length = 376

 Score = 66.5 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 42/233 (18%), Positives = 82/233 (35%), Gaps = 20/233 (8%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR---GKGLDG 242
           C + C +C   +    +  +    +    R+L    + +  L G+++       G     
Sbjct: 11  CKRRCIYCD--FFSTTQADKRREYIQALCREL---EMRKDYLQGEDIETIYLGGGTPSQL 65

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPR--DMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300
           EK  F  L  ++  I  +      T      D++   +K           L + +Q+ ++
Sbjct: 66  EKEDFEQLFETIFRIYPVNDQAEITLEANPDDLTPEYLKMLSQQP--FNRLSMGIQTFNE 123

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIA-ISSDFIVGFPGETDDDFRATMDLVDKIGY 359
             LK ++RRHTA +  +   + R        IS D + G PGET + +   +    ++  
Sbjct: 124 HTLKLLHRRHTAQQAIEAFYQSREA--GFRNISIDLMYGLPGETAEGWEYDLQQALQLQP 181

Query: 360 AQAFSFKYSPRLGTPGSNMLEQVDENVKAERL-----LCLQKKLREQQVSFND 407
               ++       T    + EQ       E L       L  +L+E      +
Sbjct: 182 EHISAYHLIYEENTALWTLREQHRVEEADEDLSVTLFKQLIHRLKEHGYQHYE 234


>gi|294668830|ref|ZP_06733923.1| lipoyl synthase [Neisseria elongata subsp. glycolytica ATCC 29315]
 gi|291309347|gb|EFE50590.1| lipoyl synthase [Neisseria elongata subsp. glycolytica ATCC 29315]
          Length = 322

 Score = 66.5 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 41/248 (16%), Positives = 83/248 (33%), Gaps = 18/248 (7%)

Query: 127 VVGPQTYYRLPELLERARFGKRV------VDTDYSVEDKFERLSIVDGGYNRKRGVTAFL 180
           VV  +   + PE +       +       +  +  +    E  +  +      +G   F+
Sbjct: 29  VVPLEEKLKKPEWIRAKLPNPKKFFEIKDILREQKMHTVCEEAACPNISECFSKGTATFM 88

Query: 181 TIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL 240
            + + C + C FC V + R   +     +  + A  +    +  + +   +    R    
Sbjct: 89  IMGDMCTRRCPFCAVGHGRPNPL--DPEEPQNLANSVRAMKLRYVVITSVD----RDDLR 142

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV-LMPYLHLPVQSGS 299
           DG    F+D + ++ E     ++       R   D  +K        +M +         
Sbjct: 143 DGGAQHFADCITAIREASPTTKIEILVPDFRGRLDIALKILAQTPPDVMNHNLETH---- 198

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
            R+ K            +++ R + + P I   S  +VG  GETDD+ R  MD +     
Sbjct: 199 PRLYKQARPGADYKHSLELLRRYKEMMPHIPTKSGIMVGL-GETDDEIREIMDDMRAHNI 257

Query: 360 AQAFSFKY 367
                 +Y
Sbjct: 258 EMITIGQY 265


>gi|56750088|ref|YP_170789.1| Fe-S oxidoreductase [Synechococcus elongatus PCC 6301]
 gi|81300430|ref|YP_400638.1| Elongator protein 3/MiaB/NifB [Synechococcus elongatus PCC 7942]
 gi|56685047|dbj|BAD78269.1| similar to Fe-S oxidoreductase [Synechococcus elongatus PCC 6301]
 gi|81169311|gb|ABB57651.1| Elongator protein 3/MiaB/NifB [Synechococcus elongatus PCC 7942]
          Length = 522

 Score = 66.5 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 61/329 (18%), Positives = 111/329 (33%), Gaps = 35/329 (10%)

Query: 62  ADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRS 121
           AD+++L+   ++++        + +I   K    +      V V G    +  EE+    
Sbjct: 66  ADIVILSAMIVQKE------DMVDQISLAKQHGKR------VAVGGPYPTSVPEEMEAA- 112

Query: 122 PIVNVVV---GPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTA 178
             V+ ++   G  T     E LER     R        +     +   D    R    + 
Sbjct: 113 -GVDFLILDEGEITLPMFVEALERGETQGRFSSNGEKPDVTTTPIPRYDL-LERSAYDSM 170

Query: 179 FLTIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG 237
            +    GC   C FC +    G +  ++   Q++ E + L D G      +  +      
Sbjct: 171 SVQFSRGCPFQCEFCDIIVLYGRKPRTKEPQQLLAELQALYDLGWRGGVFMVDD------ 224

Query: 238 KGLDGEKCTFSDLLYSL----SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHL 293
               G K     LL  L    SE     R     S      D LI+    LD     + +
Sbjct: 225 -NFIGNKRNVKRLLQDLKVWQSERGYPFRFDTEASLDLADDDELIELM--LDCNFAAVFM 281

Query: 294 PVQSGSDRILKSMNRR-HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352
            +++     L+   +  +T     + ID++   R  + + + FI+GF GE     +  +D
Sbjct: 282 GIETPDTDSLQLTKKFQNTRSPLLESIDKVT--RSGLRVIAGFIIGFDGEKPGAGQRIVD 339

Query: 353 LVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
             +  G              T   + LE+
Sbjct: 340 FAEVTGIPTTTFAMLQALPNTALWHRLEK 368


>gi|118431899|ref|NP_148647.2| hypothetical protein APE_2493.1 [Aeropyrum pernix K1]
 gi|116063222|dbj|BAA81509.2| conserved hypothetical protein [Aeropyrum pernix K1]
          Length = 543

 Score = 66.5 bits (161), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 46/236 (19%), Positives = 81/236 (34%), Gaps = 29/236 (12%)

Query: 150 VDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGC----DKFCTFCVVPYTRGIEI 203
           V  DYS+ DK   L   IV    +  R + A +    GC       C+FCV P  RG  I
Sbjct: 160 VREDYSIVDKVAPLGARIVKHHPSYGRNLVAEIETYRGCARWVSGGCSFCVEP-LRGRPI 218

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI------ 257
            R    +  E   L   GV    L  Q      G      +         L ++      
Sbjct: 219 QRRPEAIAREVEALYRAGVLHFRLGRQADILVYGSPALDSEEWPPPNPRELEKLFTGVRS 278

Query: 258 --KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMP------YLHLPVQSGSDRILKSMNRR 309
              GL  L     +P  +    + +   L V++          + +++   ++ +  N  
Sbjct: 279 AAPGLRVLHIDNVNPGTIVRYPVASEKALKVIVKLHTPGDVAAMGLETADPKVARINNLN 338

Query: 310 HTAYEYRQIIDRIRSV--------RPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
               +  + +  +  V         P +    +FI+G PGE  + +R   + ++ +
Sbjct: 339 THPEDVLEAVRIVNRVGAARGWNGMPHLLPGINFILGLPGERSETYRLNREFLETL 394


>gi|330823014|ref|YP_004386317.1| lipoyl synthase [Alicycliphilus denitrificans K601]
 gi|329308386|gb|AEB82801.1| Lipoyl synthase [Alicycliphilus denitrificans K601]
          Length = 326

 Score = 66.5 bits (161), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 80/221 (36%), Gaps = 12/221 (5%)

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
           + +  ++ +    E  S  + G     G   F+ + + C + C FC V + R   +    
Sbjct: 62  KQILREHKLHTVCEEASCPNIGECFGHGTATFMIMGDKCTRRCPFCDVGHGRPDPL--DK 119

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
            + ++ A+ +    +  + +   +    R    DG    F + +  + E+    ++   T
Sbjct: 120 EEPLNLAKTIAALRLKYVVITSVD----RDDLRDGGSGHFVECIQRIRELSPATQIEILT 175

Query: 268 SHPRDMSDCLIKAH-GDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
              R   D  ++        +M +    V     R+ K             ++ + +++ 
Sbjct: 176 PDFRGRDDRALEILKAAPPDVMNHNLETV----PRLYKEARPGSDYQFSLNLLKKFKALH 231

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           PD+   S  +VG  GETD++    M  +   G       +Y
Sbjct: 232 PDVPTKSGLMVGL-GETDEEILQVMRDMRAHGIDMLTIGQY 271


>gi|307151371|ref|YP_003886755.1| Radical SAM domain-containing protein [Cyanothece sp. PCC 7822]
 gi|306981599|gb|ADN13480.1| Radical SAM domain protein [Cyanothece sp. PCC 7822]
          Length = 522

 Score = 66.5 bits (161), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 45/309 (14%), Positives = 103/309 (33%), Gaps = 30/309 (9%)

Query: 72  IREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVV--- 128
           +      +++   G IR       K   D  +VV G       E++    P   +V    
Sbjct: 111 VTTAYYGELWRNRGLIRRGLARAKKYHPDAKMVVGGGAVSVFYEQLKTMLPQGTIVSVGE 170

Query: 129 ----------GPQTYYRLPELLERARFGKRVVDTDYSVEDK----FERLSIVDGGYN--- 171
                     G     +   ++   +  +R++    +  +K    ++ ++ +   ++   
Sbjct: 171 GEVLLERVLRGEDFSDQRCYVVGETQPRQRMIHEFPTPIEKSACNYDYIASIWSEFDYYF 230

Query: 172 RKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR-SLSQVVDEARKLIDNGVCEITLL-G 229
           ++      +  + GC   C +CV     G ++      +VV E R+L D G+        
Sbjct: 231 QENDFYVGVQTKRGCPHNCCYCVYTVVEGKQVRINPADEVVKEMRQLYDRGIRNFWFTDA 290

Query: 230 QNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMP 289
           Q + A +            +LL  + +               +++  L          M 
Sbjct: 291 QFIPARKFID------DAVELLEKILDSGMRDIHWAAYIRADNLTPQLCDLMVKTG--MN 342

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           Y  + + SGS  +++ M   +      Q    +++   +  +S ++      ET D  R 
Sbjct: 343 YFEIGITSGSQELVRKMRMGYNLRTVLQNCRDLKAAGFNDLVSVNYSFNVIDETFDTIRQ 402

Query: 350 TMDLVDKIG 358
           T+    ++ 
Sbjct: 403 TIAYHRELE 411


>gi|299136058|ref|ZP_07029242.1| Radical SAM domain protein [Acidobacterium sp. MP5ACTX8]
 gi|298602182|gb|EFI58336.1| Radical SAM domain protein [Acidobacterium sp. MP5ACTX8]
          Length = 556

 Score = 66.5 bits (161), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 48/317 (15%), Positives = 105/317 (33%), Gaps = 37/317 (11%)

Query: 57  NSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEE 116
             +  ADL+++++    +         L R R L       G           A +E E 
Sbjct: 91  EDLLWADLVMVSSM---QAQRADTLDVLSRARGLGRRTFIGGP---------WASSEPEF 138

Query: 117 ILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYN---RK 173
           +  +    + V   +      E+  +   G       Y V DK +        ++     
Sbjct: 139 LTTQ---ADHVFVGEAEEVFGEIAHQLEHG--AAQAVYKVIDKPDMSVSPMPRFDLLHMN 193

Query: 174 RGVTAFLTIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVCEITLLGQNV 232
           +  +  +    GC   C FC +    G    ++   +++ E   L+  G      +  + 
Sbjct: 194 QYTSMSVQFSRGCPFQCEFCDIITIYGRRPRAKPPEKLIAELDALLALGWRNEVFIVDD- 252

Query: 233 NAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMS----DCLIKAHGDLDVLM 288
                    G       L +SL+  +   +   +      +       L+ +  + + + 
Sbjct: 253 ------NFIGNHKLALQLTHSLATWQERNKRVISFYTEASIDLADKPELLASMVEANFM- 305

Query: 289 PYLHLPVQSGSDRILKSMNRRHT-AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDF 347
            Y+ L +++ S   LK  ++      +    + +IR     + + + FIVGF  + +  F
Sbjct: 306 -YVFLGIETPSAEALKGSSKFQNLRGDLVTQVSKIRES--GLWVLAGFIVGFDSDDETIF 362

Query: 348 RATMDLVDKIGYAQAFS 364
              +  +DK     A +
Sbjct: 363 ERQLQFIDKTAITWAMA 379


>gi|317490540|ref|ZP_07949017.1| radical SAM superfamily protein [Eggerthella sp. 1_3_56FAA]
 gi|316910355|gb|EFV31987.1| radical SAM superfamily protein [Eggerthella sp. 1_3_56FAA]
          Length = 370

 Score = 66.5 bits (161), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 46/236 (19%), Positives = 102/236 (43%), Gaps = 24/236 (10%)

Query: 186 CDKFCTFC-----VVPYTRGIEISRSLSQVVDEARKLIDNG----VCEITLLGQNVNAWR 236
           C K C +C      VP     EI   +  +  + R+    G    V  + L G   +   
Sbjct: 16  CVKRCAYCDFATAAVP-AGAPEIEAYVEDLSLQIRRKAKEGELGAVETVYLGGGTPSHVG 74

Query: 237 GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQ 296
             GL     T S  ++   E++  +      ++P  +++ +++    L   +  L + VQ
Sbjct: 75  LAGLSMLLYTLSLSMHLTDEVECTME-----ANPESLTERMVRDIWALG--VNRLSIGVQ 127

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
           S  D +L+++ R H++ + R+ I+  R+   ++++  D + G PG++ + F A++    +
Sbjct: 128 SFDDDVLRTLGRAHSSDDARRAIEAARTRFENVSV--DLMCGIPGQSAESFEASVREAVR 185

Query: 357 IGYAQAFSFKYSPRLGTP--GSNM---LEQVDENVKAERLLCLQKKLREQQVSFND 407
           +G      +  +    TP   + +   LE+ D++V+A  +    + L  +     +
Sbjct: 186 LGATHVSVYPLTIEPHTPFDAAVLAGELEEPDDDVEAAHMQIAARVLDSEGFERYE 241


>gi|298674016|ref|YP_003725766.1| radical SAM domain-containing protein [Methanohalobium evestigatum
           Z-7303]
 gi|298287004|gb|ADI72970.1| Radical SAM domain protein [Methanohalobium evestigatum Z-7303]
          Length = 611

 Score = 66.5 bits (161), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 50/307 (16%), Positives = 96/307 (31%), Gaps = 47/307 (15%)

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SR 205
           ++ +D  Y +    E              V   +T   GC   C+FC +   +G  I SR
Sbjct: 283 QQELDHVYELPFTREAHPSYKEPIPALDTVKFSITSHRGCFGNCSFCAITQHQGRIITSR 342

Query: 206 SLSQVVDEARKLIDN----------GVCEITLLGQNVNAWRGKG---------------L 240
           S+  +V EA    +           G     + G     W   G               L
Sbjct: 343 SIESIVREATGFTERPDFKGTVSGVGGPSANMYGMECKKWHKSGVCKNKFCLYPEPCPSL 402

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL--DVLMPYLHLPVQSG 298
           D +     D+L  L +I G+ ++        D++        +L    +   L +  +  
Sbjct: 403 DTKHKKSIDMLRRLRQIPGVSKVLIGYGIRHDLALQDENYMEELCAHHVGGQLKVAPEHF 462

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA----ISSDFIVGFPGETDDDFRATMDLV 354
           SD +   M +      + +   +   +   +     + S  I G PG   ++     + +
Sbjct: 463 SDEVTDVMRKPG-KQVFEEFASKFNEINEKLGKEQYLVSFLISGHPGSKIENMVELAEYI 521

Query: 355 DKIGYAQAFSFKYSPRLGTPGSNMLEQ-----------VDENVKAERLLCLQKKLREQQV 403
              G        ++P   T  + M              + ++ K +R   +Q+ L   + 
Sbjct: 522 RDTGRYTEQVQDFTPTPMTVSTCMFYTGIDPFTGKKVYIPDSPKEKR---IQRALMHYRN 578

Query: 404 SFNDACV 410
             N   V
Sbjct: 579 PKNHKLV 585


>gi|218532269|ref|YP_002423085.1| radical SAM protein [Methylobacterium chloromethanicum CM4]
 gi|254563339|ref|YP_003070434.1| hypothetical protein METDI5006 [Methylobacterium extorquens DM4]
 gi|218524572|gb|ACK85157.1| Radical SAM domain protein [Methylobacterium chloromethanicum CM4]
 gi|254270617|emb|CAX26620.1| conserved hypothetical protein, putative Fe-S oxidoreductase
           [Methylobacterium extorquens DM4]
          Length = 547

 Score = 66.5 bits (161), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 58/361 (16%), Positives = 114/361 (31%), Gaps = 47/361 (13%)

Query: 56  VNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGE 115
                 AD + ++  HI     E     +GR  +        GG  +             
Sbjct: 71  AKDFAWADAVFVSGMHI----QEGQIHDIGRRAHAAGKVAALGGPSVSGAP--------- 117

Query: 116 EILRRSPIVNVVVGPQTYYRLPELLER--ARFGKRVVDTDYSVEDKFERLSIVDGGYNRK 173
           E       ++V        RL E+L+R  +R   +VV          +  +        K
Sbjct: 118 EKYPDFDYLHVGEIGDATDRLIEILDRDLSRPAAQVVLDTKERLALSDFPAPAYEAAPLK 177

Query: 174 RGVTAFLTIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDN--GVCEITLLGQ 230
           R +   L    GC   C FC +P   G +   +S  Q+  E   +I        +  +  
Sbjct: 178 RYLIGSLQFSSGCPYRCEFCDIPQLYGRQPRLKSPEQMCAELDAIISQPGHPAVVYFVDD 237

Query: 231 NVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSD----CLIKAHGDLDV 286
           N  A         +    ++L  L E +         +    ++      +++       
Sbjct: 238 NFIA--------NRKATREMLPHLVEWQKKNNYPLQFACEATLNMAKQPEILELMRQA-N 288

Query: 287 LMPYLHLPVQSGSDRILKSMNRRHTAY-EYRQIIDRIRSVRPDIAISSDFIVGFPGETDD 345
            M  + + +++     LK +++ H A     + I+ + S    + ++S  I+G   ++D 
Sbjct: 289 FMT-VFVGIETPEADALKGIDKTHNAAVPMYEAIETLNSY--GLEVTSGIILGLDSDSDK 345

Query: 346 DFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSF 405
             +  +D +DK                TP              +RL    + L +  +  
Sbjct: 346 SEQNLIDFIDKSAIPVLTINLLQALPKTPL------------WDRLQREGRLLHDASLES 393

Query: 406 N 406
           N
Sbjct: 394 N 394


>gi|153854670|ref|ZP_01995920.1| hypothetical protein DORLON_01918 [Dorea longicatena DSM 13814]
 gi|149752774|gb|EDM62705.1| hypothetical protein DORLON_01918 [Dorea longicatena DSM 13814]
          Length = 501

 Score = 66.5 bits (161), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 62/384 (16%), Positives = 126/384 (32%), Gaps = 44/384 (11%)

Query: 49  FSQGYERVNSMDDADLIV--LNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVA 106
            +  Y  V+  DD ++ V   NT  I + A     +   +  + K S+ KE    + +  
Sbjct: 35  KASNYVMVHLPDDREISVGFENTVEITDTAGRDESTGKIQEDSEKESQKKERKRQIDLSL 94

Query: 107 GCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYS----------- 155
               +    E L       V+ G +      + LE     +  ++  +            
Sbjct: 95  YDQLERITGEPLAWG----VLTGVRPTKLAMQKLEAGWKKEDYINWAWKSARVRGEKAAL 150

Query: 156 VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEAR 215
             +  ER   +    + + G + ++ I   C   C++C          S  L +  ++  
Sbjct: 151 AWEIAEREQKILKELDYENGYSLYVGIPF-CPSVCSYCSFS-------SGPLDRWKEKVD 202

Query: 216 KLIDNGVCEITLLGQN-----VNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270
             +D    E+  + +      +N     G      T   L   +S I       Y   + 
Sbjct: 203 AYVDALCKELEFIAERSKNKKLNTIYIGGGTPTTLTAEQLERLMSWIDEKFSREYLLEYT 262

Query: 271 RD------MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
            +      +++  +K   + D+    + +  QS   + L  + R+HT  E ++     R 
Sbjct: 263 VEAGRPDSITEEKLKVIKNHDI--TRISINPQSMQQKTLDVIGRKHTVEEIKEAYALARK 320

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML-EQVD 383
              D  I+ D I G PGE   D   T+  + ++                  + M  E ++
Sbjct: 321 TGFD-NINMDIIAGLPGEDISDMEDTLAQIAQMHPDSLTVHS---LAIKRAARMEMEDLN 376

Query: 384 ENVKAERLLCLQKKLREQQVSFND 407
            + K E    L   +     +  +
Sbjct: 377 RDAK-ETHEILSGMIERAAKAAKE 399


>gi|33862446|ref|NP_894006.1| hypothetical protein PMT0173 [Prochlorococcus marinus str. MIT
           9313]
 gi|33640559|emb|CAE20348.1| conserved hypothetical protein [Prochlorococcus marinus str. MIT
           9313]
          Length = 524

 Score = 66.5 bits (161), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 60/344 (17%), Positives = 122/344 (35%), Gaps = 47/344 (13%)

Query: 62  ADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRS 121
           A+L+V++   +++           +I   K         L V V G  A +  E      
Sbjct: 66  AELVVISGMIVQKD------DMQRQIAEAKRR------GLTVAVGGPFASSTPE--APEI 111

Query: 122 PIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGV----- 176
            + +  V  +    LP  +E  + G    DT      + ++  +      R   +     
Sbjct: 112 DLADFKVLDEGEITLPMFVEAIQRG----DTSGRFSAEGDKPDVTSTPIPRFDLLELDAY 167

Query: 177 -TAFLTIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVCEITLLGQNVNA 234
            +  +    GC   C FC +    G +  +++  Q++ E + + D G      L  +   
Sbjct: 168 DSMSVQFSRGCPFNCEFCDIIVLYGRKPRTKTPEQLIAELQSIYDLGWRRSIFLVDD--- 224

Query: 235 WRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT----TSHPRDMSDCLIKAHGDLDVLMPY 290
                  G K     LL ++ + +      ++     S      D +++   +       
Sbjct: 225 ----NFIGNKRNAKLLLPAIRQWQEEKGYPFSFATEASVDLADDDEMMRMMHEAR--FES 278

Query: 291 LHLPVQSGSDRILKSMNR-RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           + L +++  +  L++  + ++T +   + +D+I +    I + + FI+GF GE D     
Sbjct: 279 VFLGIETPDEASLETARKIQNTRHPLDEAVDKITAN--GIRVMAGFIIGFDGEKDGAGAR 336

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLC 393
            +D V + G   A          T   N LE      K  RL+ 
Sbjct: 337 IVDFVTRTGIPAAMMGMLQALPNTALWNRLE------KEGRLIE 374


>gi|13542144|ref|NP_111832.1| Fe-S oxidoreductase [Thermoplasma volcanium GSS1]
 gi|14325575|dbj|BAB60478.1| hypohtetical protein [Thermoplasma volcanium GSS1]
          Length = 558

 Score = 66.5 bits (161), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 56/346 (16%), Positives = 113/346 (32%), Gaps = 53/346 (15%)

Query: 74  EKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAE---GEEILRRSPIVNVVVGP 130
           +    + +  L      K ++ +EG    ++V G          +EI +    V+  V  
Sbjct: 121 DAWVRREWDTLME----KVNKAREGKKAKLIVGGPGVWEFTILRDEIDKY--KVDYYVQG 174

Query: 131 QTYYRLPELLERARFGK--------------RVVDTDYSVEDKFERLSIVDGGYNRKRGV 176
           +T   + +L E+   G                        ++KF    I    Y R   +
Sbjct: 175 ETDDVVADLFEQVAEGNIDKQMFFNGYMSYDEEFHKVLKKDEKFLARGITQSAYPRLEDI 234

Query: 177 TAFLT--------IQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLL 228
              +         +  GC   C FC V           LS ++DE +  +  GV    L 
Sbjct: 235 PEIVNPSMKGMVEVMRGCGVGCDFCEVTL--RPLRYMPLSMIIDEIKINVAGGVDNAWLH 292

Query: 229 GQNV-NAWRGKGLDGEKCTFSDLLYSLSEIKGLV--RLRYTTSHPRDMSDCLIKAHGDLD 285
              +     G   +  +   S+L  ++  + G+      +           +I+    + 
Sbjct: 293 SDEIFGYKHGHFFEPNEEALSELFSAVMSVPGVKTSNPTHGRISIPAGYPEMIEKLSKIL 352

Query: 286 VLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI-------------AIS 332
              P   + +Q+G +   + + ++H   +   +   +     DI               +
Sbjct: 353 KAGPRNWIGIQTGLETGSEVLAKKHMPNKTLPLRIGVDGSWQDIVWQGVNVETKYYWRSA 412

Query: 333 SDFIVGFPGETDDDFRATMDLVDKIGYA----QAFSFKYSPRLGTP 374
               VG  GET +D   T+ L++K+  +    + F F  +P +  P
Sbjct: 413 FTIQVGQEGETPEDLWDTIALINKLSNSYVDGRPFEFTVTPLVNVP 458


>gi|303239512|ref|ZP_07326038.1| Radical SAM domain protein [Acetivibrio cellulolyticus CD2]
 gi|302592890|gb|EFL62612.1| Radical SAM domain protein [Acetivibrio cellulolyticus CD2]
          Length = 570

 Score = 66.5 bits (161), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 43/250 (17%), Positives = 89/250 (35%), Gaps = 17/250 (6%)

Query: 113 EGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVED---KFERLSIVDGG 169
                + R+P V+ ++  +      ++L      ++ V     +++   + + + + D  
Sbjct: 199 NYHRFMERAPYVDKMIIGEGELIFLKILNGELPAEQKVFMIEDIKEGLLELDEMPLPDFS 258

Query: 170 -YNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLL 228
            +              GC   C+FC           +   +VVDE   L +     + +L
Sbjct: 259 DFEISNYPLLPTYTSRGCTFRCSFCAETVYWKKYRKKEAKKVVDEFITLNEKYGRSLFVL 318

Query: 229 GQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLM 288
              V               + +   +     L    Y        +              
Sbjct: 319 TDCVI---------NPLVNNLVDEIIKRDLQLYWDVYLKVDKNVCNPEC--TIKWRKGGF 367

Query: 289 PYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFR 348
               L ++SGS R+L  +++R T  E R  I  + S    I  ++ +  G PGET++DF+
Sbjct: 368 YRARLGIESGSQRVLDMIDKRITLDEIRAAITSLASA--GIKTTTYWFSGHPGETEEDFQ 425

Query: 349 ATMDLVDKIG 358
            T+DL++++ 
Sbjct: 426 QTLDLLEELQ 435


>gi|163853411|ref|YP_001641454.1| radical SAM domain-containing protein [Methylobacterium extorquens
           PA1]
 gi|240140830|ref|YP_002965310.1| hypothetical protein MexAM1_META1p4400 [Methylobacterium extorquens
           AM1]
 gi|163665016|gb|ABY32383.1| Radical SAM domain protein [Methylobacterium extorquens PA1]
 gi|240010807|gb|ACS42033.1| conserved hypothetical protein, putative Fe-S oxidoreductase
           [Methylobacterium extorquens AM1]
          Length = 547

 Score = 66.5 bits (161), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 58/361 (16%), Positives = 114/361 (31%), Gaps = 47/361 (13%)

Query: 56  VNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGE 115
                 AD + ++  HI     E     +GR  +        GG  +             
Sbjct: 71  AKDFAWADAVFVSGMHI----QEGQIHDIGRRAHAAGKVAALGGPSVSGAP--------- 117

Query: 116 EILRRSPIVNVVVGPQTYYRLPELLER--ARFGKRVVDTDYSVEDKFERLSIVDGGYNRK 173
           E       ++V        RL E+L+R  +R   +VV          +  +        K
Sbjct: 118 EKYPDFDYLHVGEIGDATDRLIEILDRDLSRPAAQVVLDTKERLALSDFPAPAYEAAPLK 177

Query: 174 RGVTAFLTIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDN--GVCEITLLGQ 230
           R +   L    GC   C FC +P   G +   +S  Q+  E   +I        +  +  
Sbjct: 178 RYLIGSLQFSSGCPYRCEFCDIPQLYGRQPRLKSPEQMCAELDAIISQPGHPAVVYFVDD 237

Query: 231 NVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSD----CLIKAHGDLDV 286
           N  A         +    ++L  L E +         +    ++      +++       
Sbjct: 238 NFIA--------NRKATREMLPHLVEWQKKNNYPLQFACEATLNMAKQPEILELMRQA-N 288

Query: 287 LMPYLHLPVQSGSDRILKSMNRRHTAY-EYRQIIDRIRSVRPDIAISSDFIVGFPGETDD 345
            M  + + +++     LK +++ H A     + I+ + S    + ++S  I+G   ++D 
Sbjct: 289 FMT-VFVGIETPEADALKGIDKTHNAAVPMYEAIETLNSY--GLEVTSGIILGLDSDSDK 345

Query: 346 DFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSF 405
             +  +D +DK                TP              +RL    + L +  +  
Sbjct: 346 SEQNLIDFIDKSAIPVLTINLLQALPKTPL------------WDRLQREGRLLHDASLES 393

Query: 406 N 406
           N
Sbjct: 394 N 394


>gi|182434706|ref|YP_001822425.1| putative methyltransferase [Streptomyces griseus subsp. griseus
           NBRC 13350]
 gi|178463222|dbj|BAG17742.1| putative methyltransferase [Streptomyces griseus subsp. griseus
           NBRC 13350]
          Length = 617

 Score = 66.5 bits (161), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 55/320 (17%), Positives = 97/320 (30%), Gaps = 39/320 (12%)

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG-------------- 129
           L +   L  +      D LVV  G     + E + RR P V+VV                
Sbjct: 60  LNQFGALAETYKSVRPDGLVVFGGTHVAHQAERVFRRFPEVDVVANGEGEFTFRDLLLAV 119

Query: 130 -----PQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVD--------GGYNRKRGV 176
                P    R+P +  R   G      +    D  + +                R    
Sbjct: 120 LDQKAPHDLARVPGISYRDEEGAVHTTAEAPRIDDLDMIPSPFLTGAIPLLDHRGRFPYD 179

Query: 177 TAFLTIQEGCDKFCTFCVVPYTRG-IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW 235
            A +    GC   C+FC      G      S  ++  E      + +  + L   N    
Sbjct: 180 VALMETNRGCPYKCSFCYWGGAVGQRMRDFSRERLRAELDLFGYHRIPTVVLCDSNFGMR 239

Query: 236 RGKGLDGEKCTFSDLLYSLSEIKGLVR-LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP 294
           +          F + L    E  G  R L  + +  +  +   I      +       + 
Sbjct: 240 QPD------AEFVEDLVRTREKYGFPRSLETSWAKNKSKTFHNIIRRMKSEGFQSSFTVA 293

Query: 295 VQSGSDRILKSMNRRHTA-YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
           +Q+  D  L+ M R +    E++++   + +    +   ++ I G PGET D F    D 
Sbjct: 294 LQTLDDTALRDMGRSNMRLNEWKELAAWLAA--EGLDAYAELIWGAPGETVDSFLTGYDQ 351

Query: 354 VDKIGYAQAFSFKYSPRLGT 373
           + +    +   +       T
Sbjct: 352 LSEH-VPRIAVYPLLLLPNT 370


>gi|298504678|gb|ADI83401.1| cobalamin-binding radical SAM domain iron-sulfur cluster-binding
           oxidoreductase [Geobacter sulfurreducens KN400]
          Length = 504

 Score = 66.5 bits (161), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 52/332 (15%), Positives = 103/332 (31%), Gaps = 26/332 (7%)

Query: 54  ERVN-SMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQA 112
           E  +  +  ADL+ ++   I+ +A  +    LGR R L          +  V  G +   
Sbjct: 57  EVTDADLARADLVFVSAMTIQREAVRE---ILGRCRQL---------GVTTVAGGPLFTT 104

Query: 113 EGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNR 172
             EE     P  + +V  +    LP  L+     +              R  +       
Sbjct: 105 APEEF----PEADHLVLNEAELTLPRFLDDLAMDRAQRIYTAEARADVTRTPLPRWDLLD 160

Query: 173 KRGVTAF-LTIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVCEITLLGQ 230
            R   A  +    GC   C FC +    G    ++   Q+  E   L   G         
Sbjct: 161 IRDYAAMNIQYSRGCPFDCEFCDITRLFGRRPRTKGREQLTAELDGLHARGWQGGVFFVD 220

Query: 231 NVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY 290
           +   + G     ++     ++    +          +S        L+     +      
Sbjct: 221 D--NFIGDRAKLKREVLPAMIDWQEQRGRPFSFFTESSIDLADDPELMGLM--VRAGFTE 276

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV-RPDIAISSDFIVGFPGETDDDFRA 349
           + + +++  D  L    +       R +++ ++ + R  + +   FIVGF  + +  F  
Sbjct: 277 VFVGIETPHDEGLHESGKVQNR--NRDLLESVKRIQRAGLQVQGGFIVGFDSDPETIFER 334

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
            +  + + G   A     +   GT     L Q
Sbjct: 335 QIRFIQESGIVTAMVGMLTALRGTRLHRRLAQ 366


>gi|270307719|ref|YP_003329777.1| radical SAM domain protein [Dehalococcoides sp. VS]
 gi|270153611|gb|ACZ61449.1| radical SAM domain protein [Dehalococcoides sp. VS]
          Length = 559

 Score = 66.5 bits (161), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 42/243 (17%), Positives = 92/243 (37%), Gaps = 34/243 (13%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
           + ++ GC   C FC+V         R L  ++ +A++ +      I L+G  V+      
Sbjct: 254 MEVERGCGHQCRFCLVAGVFCPLRYRPLELLLKQAKEGMLE-RKRIGLVGPVVS------ 306

Query: 240 LDGEKCTFSDLLYSLSEIKGL-VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
                     +   +S ++G+ V L  ++   + +S+ ++         +  L +  ++G
Sbjct: 307 ------DHPQVAELISCLRGMGVGLSISSLRIKPLSEKMLTELALSG--VSSLAMAPEAG 358

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA-ISSDFIVGFPGETDDDFRATMDLVDKI 357
           S+R+ + + +  T  +  +    +         +   F++G PGETD+D    + L +K 
Sbjct: 359 SERLRRIIRKGITEDDIIRAAALVAEK--GFRQLKFYFMLGLPGETDEDIEEMIKLAEKA 416

Query: 358 GYA----------QAFSFKYSPRLGTP--GSNMLEQVDENVKAERLLCLQKKLREQQVSF 405
                              + P+  TP     M + V   +   RL  ++ +L  Q +  
Sbjct: 417 QQVMSAAGRGLRLSLNIAPFVPKPSTPFQWLGMEDAV---LVKRRLDIIRLRLEGQGIEV 473

Query: 406 NDA 408
              
Sbjct: 474 RAE 476


>gi|91204408|emb|CAJ70908.1| similar to Mg-protoporphyrin monomethylester cyclase [Candidatus
           Kuenenia stuttgartiensis]
          Length = 473

 Score = 66.5 bits (161), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 45/245 (18%), Positives = 81/245 (33%), Gaps = 34/245 (13%)

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAF--LTIQEGCDKFCTFCVVPYT------ 198
           + + + D         L   D  YN K G+  F  +    GC   C +CV          
Sbjct: 168 EPIENLDELPFPARHLLEEKDVYYNPKLGMRPFTAVCTSRGCSYRCIYCVPSSLSFSREL 227

Query: 199 --------RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDL 250
                   +     RS   ++ E   L   G          VN    + + GE+ T    
Sbjct: 228 EYKHYFDKKPPVRKRSSENIIGEFALLKSQGYKA-------VNMQDDQFVWGEERTI--- 277

Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLI-KAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
              + E    + + +  S   D     I +A    +    ++ L V+S +  IL  + + 
Sbjct: 278 --KICEGIKDLDIVWGCSARSDHLTEPIVRAMAAAN--CKFIDLGVESFNQEILDYVKKD 333

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGF-PGETDDDFRATMDLVDKIGYAQAFSFKYS 368
               +  + I  ++     I+   + + G  P ET +  R   + V ++   Q      +
Sbjct: 334 IDVKKNEEAIRLVKKY--GISAKINIMFGASPLETMETIRKNTEEVKRLKVDQVMYNIAN 391

Query: 369 PRLGT 373
           P  GT
Sbjct: 392 PFPGT 396


>gi|257063742|ref|YP_003143414.1| putative oxygen-independent coproporphyrinogen III oxidase [Slackia
           heliotrinireducens DSM 20476]
 gi|256791395|gb|ACV22065.1| putative oxygen-independent coproporphyrinogen III oxidase [Slackia
           heliotrinireducens DSM 20476]
          Length = 372

 Score = 66.5 bits (161), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 41/213 (19%), Positives = 84/213 (39%), Gaps = 23/213 (10%)

Query: 186 CDKFCTFC-----VVPYTRGIEISRSLSQVVDEARKLIDNGV---CEITLLGQNVNAWRG 237
           C   C +C      +P     EI   +  +V + R     G     E   +G    ++ G
Sbjct: 16  CKHRCAYCDFTTRAIPKD-SPEIGEYIENLVLDIRHASREGFLSQIETVYIGGGTPSYIG 74

Query: 238 -KGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQ 296
            K L     T    ++   E++  +      ++P  ++  LI+      + +  L + VQ
Sbjct: 75  TKHLSNLLYTLGVSMHLTPEVECSME-----ANPESVTPELIRDI--YALGVNRLSIGVQ 127

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
           S  D +LK M+R H     ++ I   +    ++++  D + G PG+T + F  ++     
Sbjct: 128 SFDDELLKRMDRIHDGARAKEAIAMAQERFDNVSV--DLMCGIPGQTPEMFLDSVQQAVD 185

Query: 357 IGYAQAFSFKYSPRLGTPGSNMLE----QVDEN 385
           +G      +  +    TP   M++    ++ E+
Sbjct: 186 LGVKHVSIYPLTIEEHTPLQRMVDAGEIEIPED 218


>gi|237746720|ref|ZP_04577200.1| Fe-S oxidoreductase [Oxalobacter formigenes HOxBLS]
 gi|229378071|gb|EEO28162.1| Fe-S oxidoreductase [Oxalobacter formigenes HOxBLS]
          Length = 741

 Score = 66.5 bits (161), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 79/224 (35%), Gaps = 34/224 (15%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLID--NGVCEIT--LLGQNVNA 234
           + I  GC   CTFC +    G  I SRS   ++ E  ++ D   G   +   L G + N 
Sbjct: 379 VNIMRGCFGGCTFCSITEHEGRIIQSRSEPSILREIEEIRDRVEGFTGVISDLGGPSANM 438

Query: 235 WR----------------------GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
           +R                       K LD +      L      + G+ ++   +    D
Sbjct: 439 YRLGCKNEKAQQVCRRLSCVYPEICKNLDTDHGKLISLYRKARALPGIKKILIGSGVRYD 498

Query: 273 MSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRRH--TAYEYRQIIDRI-RSVRP 327
           ++    +   +L    +   L +  +     +L  M +    T   +R++ DR  +    
Sbjct: 499 LAVESPEYIRELVTHHVGGLLKIAPEHTEPNVLSKMMKPGIGTYDAFRRLFDRYSKEAGK 558

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGY--AQAFSFKYSP 369
           +  +   FI   PG TD+D       + K  +   Q  +F  +P
Sbjct: 559 EQYLVPYFIAAHPGATDEDMLNLALWLKKNRFRPDQVQTFMPTP 602


>gi|242280297|ref|YP_002992426.1| radical SAM domain protein [Desulfovibrio salexigens DSM 2638]
 gi|242123191|gb|ACS80887.1| Radical SAM domain protein [Desulfovibrio salexigens DSM 2638]
          Length = 837

 Score = 66.5 bits (161), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 44/277 (15%), Positives = 92/277 (33%), Gaps = 25/277 (9%)

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
           F ++ V  D+      +   +  G     R     + I  GC + C FC           
Sbjct: 211 FVEKAVVEDFEPIPFPKEQILPYGQVIHDRLT---MEIARGCTRGCRFCQAGIIYRPVRE 267

Query: 205 RSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           R+   +     + ++  G  E + L  +               F+    + +  +  + +
Sbjct: 268 RTPETLTKTLMEGLEETGYEETSFLSLSTG-----DYSALDTLFAQCFDNCAAEQ--ISI 320

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
              +     +S+ +++    +        L  ++GS R+   +N+  T     +    + 
Sbjct: 321 SLPSLRVGSLSEPIMERIATIRR--TGATLAPEAGSQRMRDVINKGITEEALLKHALMLY 378

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG-YAQAF---------SFKYSPRLGT 373
                  I   F++G P ET +D  A +DL  K+   A               + P+  T
Sbjct: 379 ENGWQ-NIKLYFMIGLPTETFEDLDAIVDLCVKVRDVAGKHIKKLNITAAVSPFVPKPHT 437

Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACV 410
           P      Q+      ERL  +++K   Q+     + +
Sbjct: 438 P-FQWERQISLEEIGERLDYMREKFNNQKRIKMKSHI 473


>gi|256375378|ref|YP_003099038.1| coproporphyrinogen III oxidase [Actinosynnema mirum DSM 43827]
 gi|255919681|gb|ACU35192.1| oxygen-independent coproporphyrinogen III oxidase [Actinosynnema
           mirum DSM 43827]
          Length = 404

 Score = 66.5 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 54/251 (21%), Positives = 91/251 (36%), Gaps = 25/251 (9%)

Query: 172 RKRGVTAFLTIQEGCDKFCTFCVV-PYTRGIE-ISRSLSQVVDEARKLIDNGVCEI---- 225
           R  GV   +     C   C +C    YT G    S S    ++  R+ +D     +    
Sbjct: 28  RPFGVYVHVPF---CATRCGYCDFNTYTAGELGTSASPESWLEGLRRELDLAARVLGSPP 84

Query: 226 ----TLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAH 281
                 +G    +  G   DG       +  S+    G      T S+P   S     A 
Sbjct: 85  AAETVFVGGGTPSLLG--ADGLAAVLEAVRSSVGLAPGAE--VTTESNPESTSSEFFAAI 140

Query: 282 GDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPG 341
            +       + L +QS +  +L+ ++R+HT           R    +  ++ D I G PG
Sbjct: 141 REAG--YTRVSLGMQSAARHVLQILDRKHTPGRAAAAAREAREGGFE-HVNLDLIYGTPG 197

Query: 342 ETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM-----LEQVDENVKAERLLCLQK 396
           E D+D R ++ +V   G     ++      GT  +       L   D++V AER   +  
Sbjct: 198 ERDEDLRESLAVVRDAGVDHLSAYALIVEEGTALARRVRRGELPAPDDDVLAERYEMVDA 257

Query: 397 KLREQQVSFND 407
             RE  +S+ +
Sbjct: 258 AAREMGMSWYE 268


>gi|288962830|ref|YP_003453124.1| radical SAM [Azospirillum sp. B510]
 gi|288915096|dbj|BAI76580.1| radical SAM [Azospirillum sp. B510]
          Length = 707

 Score = 66.5 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 45/285 (15%), Positives = 92/285 (32%), Gaps = 47/285 (16%)

Query: 132 TYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTA------------- 178
                  L++R    +  ++      +  E   + D  Y R    +              
Sbjct: 282 NPGNARALVQRHGDREVWLNPPPIPLETNEMDGVYDLPYARAPHPSYGDARIPAWEMIRF 341

Query: 179 FLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDNGVCEITLL----GQNVN 233
            + I  GC   C+FC +    G  I SRS   ++ E  ++ D       ++    G   N
Sbjct: 342 SVNIMRGCFGGCSFCSITEHEGRIIQSRSEGSILREIEQIRDKTKGFTGVISDMGGPTAN 401

Query: 234 AWR----------------------GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPR 271
            +R                       K L+ +  +   L      + G+ ++   +    
Sbjct: 402 MYRLACKDKETEAVCRRPSCVFPDICKNLNTDHSSLVQLYRKARAVPGVKKIHIASGLRY 461

Query: 272 DMSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRRHTAYE--YRQIIDRI-RSVR 326
           D++    +   +L    +  YL +  +      L  M +        ++++ D+  +   
Sbjct: 462 DLAVRNPEYVKELVTHHVGGYLKIAPEHTEPGPLAKMMKPGMGAYDEFKRMFDKAAKEAG 521

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGY--AQAFSFKYSP 369
             + +   FI   PG TD+D       + + G+   Q  +F  SP
Sbjct: 522 KKLYLIPYFIAAHPGTTDEDMMNLALWLKRNGFKADQVQTFLPSP 566


>gi|39995655|ref|NP_951606.1| radical SAM domain-containing protein [Geobacter sulfurreducens
           PCA]
 gi|39982418|gb|AAR33879.1| radical SAM domain protein [Geobacter sulfurreducens PCA]
          Length = 504

 Score = 66.5 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 49/336 (14%), Positives = 104/336 (30%), Gaps = 34/336 (10%)

Query: 54  ERVN-SMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQA 112
           E  +  +  ADLI ++   I+  A  ++     ++             +  V  G +   
Sbjct: 57  EVTDADLARADLIFVSAMTIQRDAVREILCRCRQL------------GVTTVAGGPLFTT 104

Query: 113 EGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNR 172
             EE     P  + +V  +    LP  L+     +              R  +       
Sbjct: 105 APEEF----PEADHLVLNEAELTLPRFLDDLAMDRAQRIYTTEARADVTRTPLPRWDILD 160

Query: 173 KRGVTAF-LTIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVCEITLLGQ 230
            R   A  +    GC   C FC +    G    ++   Q+  E   L   G         
Sbjct: 161 IRDYAAMNIQYSRGCPFDCEFCDITRLFGRRPRTKGREQLTAELDSLHARGWQGGVFFVD 220

Query: 231 NVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT----TSHPRDMSDCLIKAHGDLDV 286
           +        +        ++L ++ + +   R  ++    +S        L+     +  
Sbjct: 221 D------NFIGDRAKLKREVLPAMVDWQEQRRRPFSFFTESSIDLADDPELMGLM--VRA 272

Query: 287 LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV-RPDIAISSDFIVGFPGETDD 345
               + + +++  D  L    +       R +++ ++ + R  + +   FIVGF  + + 
Sbjct: 273 GFTEVFVGIETPHDEGLHESGKVQNR--NRDLLESVKRIQRAGLQVQGGFIVGFDSDPET 330

Query: 346 DFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
            F   +  + + G   A     +   GT     L Q
Sbjct: 331 IFERQIRFIQESGIVTAMVGMLTALRGTRLHRRLAQ 366


>gi|168187878|ref|ZP_02622513.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Clostridium botulinum C str. Eklund]
 gi|169294256|gb|EDS76389.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Clostridium botulinum C str. Eklund]
          Length = 375

 Score = 66.5 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 46/214 (21%), Positives = 90/214 (42%), Gaps = 19/214 (8%)

Query: 186 CDKFCTFCVVPYTRGIE-----ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL 240
           C + C +C      G E      SR+LS+ +D+ +   +  +  I + G        +G 
Sbjct: 14  CKQKCLYCDFTSYCGRENRMVDYSRALSKEIDQIK---NKKINTIFIGGGTPTYLCLQGW 70

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTT-SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
           +        L  S+ +++  + L +T  S+PR   +  +K    +   +  + + +Q+  
Sbjct: 71  N-------ILKKSIDKLEKSIDLEFTVESNPRTFDEEKLKFLKSIG--VNRISIGLQAWQ 121

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
           D+ LKS+ R HT  E+ +     R +     I+ D + G P +T  D++ T+  V K+  
Sbjct: 122 DKHLKSLGRIHTKDEFLKSYHMARQIGFK-NINVDLMFGIPNQTLADWKETLLEVTKLNP 180

Query: 360 AQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLC 393
                +      GTP  +  E+    + +E L  
Sbjct: 181 EHLSCYSLIIEEGTPFYDFYEKNKIELPSEELER 214


>gi|91203719|emb|CAJ71372.1| hypothetical protein kustc0627 [Candidatus Kuenenia
           stuttgartiensis]
          Length = 468

 Score = 66.5 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 37/208 (17%), Positives = 72/208 (34%), Gaps = 13/208 (6%)

Query: 167 DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEIT 226
                R+      +    GC   C+FC   + +     R+   ++ E R+LI        
Sbjct: 190 PLPIPREDIRALPVNTARGCVAGCSFCYHVFKKTPYRYRNPDNIMTELRQLIKQYNLNYI 249

Query: 227 LLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM-SDCLIKAHGDLD 285
           LL   V  +       ++ T + +   L E  GL               D  I+    + 
Sbjct: 250 LLWDEVTFF------SKQQTVAFVDRILEE--GLQFYWAGLCRANLFQDDDDIEIMKKMK 301

Query: 286 VL-MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETD 344
                 +   ++S    ILK+MN+  +  ++       R    +I + +  ++GFP ET 
Sbjct: 302 RAGCIAMVYSLESAEPEILKAMNKNISVEQFSLQTQLFRKA--EIPVFTSLVIGFPQETP 359

Query: 345 DDFRATMDLVDKIGYAQAFSFKYSPRLG 372
           +  + T +   +       +    P+ G
Sbjct: 360 ESLKKTFNCCIENRI-YPSAGYLLPQPG 386


>gi|110801217|ref|YP_695852.1| hypothetical protein CPF_1407 [Clostridium perfringens ATCC 13124]
 gi|123148801|sp|Q0TR88|Y1407_CLOP1 RecName: Full=UPF0313 protein CPF_1407
 gi|110675864|gb|ABG84851.1| radical SAM domain protein [Clostridium perfringens ATCC 13124]
          Length = 662

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 64/399 (16%), Positives = 123/399 (30%), Gaps = 54/399 (13%)

Query: 69  TCHIREKAAE--KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNV 126
           TC+I +   E  + +  L   + + + +        +          G  +++      V
Sbjct: 200 TCYIADSLDEIYEEHIVLPSFKEVSSDKRTYAECFKIQYDEQDPVR-GRTLVQEHNGKYV 258

Query: 127 VVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGC 186
           V+         E L+R              +  +  +   DGG      V   +    GC
Sbjct: 259 VINKPEMPLSREELDRVYA--------LPYQKTYHPIYEKDGGIAAIEEVKFSIVSSRGC 310

Query: 187 DKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDNGVCEITLLGQ--------------- 230
              C+FC + + +G  + SRS   +V+EA ++      +  +                  
Sbjct: 311 SGNCSFCAITFHQGRIVTSRSEDSIVEEAEEITKYDDFKGYIHDIGGPTANFRKPACKKQ 370

Query: 231 -NVNAWR---------GKGLDGEKCTFSDLLYSLSEIKGLVR------LRYTTSHPRDMS 274
             + A +          K ++ +   +  LL  + ++ G+ +      LRY         
Sbjct: 371 LTLGACKHKRCMSPGICKNMEVDHREYLHLLRRVRKLPGIKKVFIRSGLRYDYIMADKDD 430

Query: 275 DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH--TAYEYRQIIDRIRSVRPDIA-I 331
               +       +   L +  +  S  +LK M +    T  E+R+   RI         I
Sbjct: 431 TFFKELV--EHHVSGQLKVAPEHVSPNVLKYMGKPAGKTYDEFRRKFFRITERLGKKQFI 488

Query: 332 SSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM-----LEQVDENV 386
               +   PG   +D     + +  I Y       + P  GT  + M          E V
Sbjct: 489 IPYLMSSHPGCKLEDAIMLAEYLRDINYQPEQVQDFYPTPGTLSTTMFYTGLDPLTMEEV 548

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK 425
              R    +   R      N      + + L+ K G+E 
Sbjct: 549 YIPRSKEEKAMQRALLQFKNPKNYNIVYDALV-KVGRED 586


>gi|84687809|ref|ZP_01015679.1| hypothetical methyltransferase [Maritimibacter alkaliphilus
           HTCC2654]
 gi|84664181|gb|EAQ10675.1| hypothetical methyltransferase [Rhodobacterales bacterium HTCC2654]
          Length = 553

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 53/330 (16%), Positives = 110/330 (33%), Gaps = 38/330 (11%)

Query: 54  ERVNS-MDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQA 112
           E  +  +D AD+++ +          +    L      K          + VV G    +
Sbjct: 63  ELTDDQIDWADIVMFSGM------ISQQRHLLNEAARCKARGK------ITVVGGPDVSS 110

Query: 113 EGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNR 172
             E        V++ V  +    L E++   R G R  +    +       + +      
Sbjct: 111 HPE----MYADVDIRVIGEAEGVLDEVIAALRSGIRSGEFRAPLHTVDVTTTPIPRYDLL 166

Query: 173 KRGVTAFLTIQ--EGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVC-EITLL 228
                  + +Q   GC   C FC +    G +  ++   Q++ E  +L + G    +  +
Sbjct: 167 DLDDYLMINVQLSRGCPFLCEFCDIIELFGRKPRTKMEDQILSELDRLYEMGYRGHVDFV 226

Query: 229 GQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPR----DMSDCLIKAHGDL 284
             N+         G K +    L  L E +      +  S             +    D 
Sbjct: 227 DDNLI--------GNKKSVKAFLPKLVEWQRAHGFPFEFSTEASLNLADDHEFLGLMRDA 278

Query: 285 DVLMPYLHLPVQSGSDRILKSMNRR-HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGET 343
                   + ++S    +L +M ++ +T  +  + I  I+S    I + + FIVGF  E+
Sbjct: 279 GFF--TTFVGIESPDPDVLVAMKKKQNTKRDIAKSIHTIQSY--GIFVIAGFIVGFDNES 334

Query: 344 DDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
           +   +  ++L+++     A     +    T
Sbjct: 335 EHAAQGMIELIEEASIPVAMVGLLTALPNT 364


>gi|95929696|ref|ZP_01312438.1| Radical SAM [Desulfuromonas acetoxidans DSM 684]
 gi|95134393|gb|EAT16050.1| Radical SAM [Desulfuromonas acetoxidans DSM 684]
          Length = 452

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 52/313 (16%), Positives = 108/313 (34%), Gaps = 45/313 (14%)

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
            R+L     +   D  VV+ G  A  + E+        + VV  +  + L E++     G
Sbjct: 75  ARSLALQSHQLWPDCFVVIGGHHATVQPEDF--NDDCFDAVVIGEGVFTLREIVTAIEHG 132

Query: 147 KRVVDTD-----------YSVEDKFERLSIVDGG------------YNRKRGVTAFLTIQ 183
             ++D             YS    +  L+ +               ++      A +   
Sbjct: 133 GALIDIPGIALPCDEGMIYSETRPYTDLNALPFPARELTKHYRAHYFSEWFKPLASVRTS 192

Query: 184 EGCDKFCTFCV-VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG 242
            GC   C FC     T G  + R   QVV+E + + +  V            +       
Sbjct: 193 LGCTARCNFCALWSITAGKYLRRDPDQVVEELKGIDEPNV-----------FFCDDESMC 241

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTS--HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300
           +    + L   + +  G+ +  +  +          L +    +   +  + + +++ SD
Sbjct: 242 DSKRMATLATKIHQ-AGIRKNYFLYARVDTIVRQPELFRQWAAIG--LKQVFVGMEACSD 298

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
             L+ MN+  T  E  Q +  ++ +   + + + F+V  P  +  DF A +  + ++   
Sbjct: 299 ERLQRMNKGVTVAEQEQAVAILKKI--GVIMYASFMVD-PDYSHQDFDALIRYIRRLKLT 355

Query: 361 QAFSFKYSPRLGT 373
            A     +P  GT
Sbjct: 356 YATFTVMTPLPGT 368


>gi|312622034|ref|YP_004023647.1| Radical SAM domain-containing protein [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312202501|gb|ADQ45828.1| Radical SAM domain protein [Caldicellulosiruptor kronotskyensis
           2002]
          Length = 535

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 44/289 (15%), Positives = 100/289 (34%), Gaps = 20/289 (6%)

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135
           A          +  L     K    + +++ G        + L     V+ ++  +  Y 
Sbjct: 58  AISTYIWNRSYVEKLVEGLKKAQKSIKIILGGP---EVYFDSLEEWKFVDSIIRGEGEYP 114

Query: 136 LPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
             +L E    G++    +Y   D   +L               +     GC   C++C+ 
Sbjct: 115 FLDLCEHIAAGRQYTQKEYPPFD-LSKLPFAYKDEKLDTSRIYYYESSRGCPFRCSYCLS 173

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
              +G      L +V +E   L    V  I  + +  NA + + +  +   F       +
Sbjct: 174 SIEKG-VRFAPLEKVFEELDYLFKKQVRLIKFVDRTFNANKERAI--KIIEFCKQKSQAT 230

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
           ++       +    P  + + +I A  +    +  L + +QS + + L +++R     + 
Sbjct: 231 QV-------HFEIDPTLLDNDIISAINNSKDDLFRLEIGLQSFNPQTLDAIDRFFDIDKI 283

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD-----LVDKIGY 359
            + + ++   +  I +  D I G P E    F+ ++D       D++  
Sbjct: 284 DKNLKKLMENKKAI-VHLDLIAGLPYEDFLSFKRSLDKTILYFADEVQL 331


>gi|15894308|ref|NP_347657.1| Fe-S oxidoreductase [Clostridium acetobutylicum ATCC 824]
 gi|15023931|gb|AAK78997.1|AE007617_9 Predicted Fe-S oxidoreductases [Clostridium acetobutylicum ATCC
           824]
 gi|325508436|gb|ADZ20072.1| Fe-S oxidoreductase [Clostridium acetobutylicum EA 2018]
          Length = 548

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 35/182 (19%), Positives = 72/182 (39%), Gaps = 11/182 (6%)

Query: 183 QEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG 242
             GC   C +C+    RG     +  +V  E + L D  V  +  + +  NA     ++ 
Sbjct: 184 SRGCPFNCKYCLSSTIRG-VRFLNPDRVKRELKFLADKKVKIVKFVDRTFNANPKFAMEI 242

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
            K        ++          +       +++  I+   +         + VQS ++ +
Sbjct: 243 WKYLMELDTETV---------FHFEITADIVTEDEIELLKNAPKGRFQFEVGVQSTNNEV 293

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           LK++NR     + ++I+ ++   + +I    D IVG PGE  + F+ + + V  IG  + 
Sbjct: 294 LKNVNRYIEFKDIKEIVMKLEEGK-NINQHLDLIVGLPGEDFNSFKNSFNDVYSIGPEKL 352

Query: 363 FS 364
             
Sbjct: 353 QI 354


>gi|312797418|ref|YP_004030340.1| lipoic acid synthetase [Burkholderia rhizoxinica HKI 454]
 gi|312169193|emb|CBW76196.1| Lipoic acid synthetase (EC 2.8.1.8) [Burkholderia rhizoxinica HKI
           454]
          Length = 367

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 82/221 (37%), Gaps = 12/221 (5%)

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
           + +  ++++    E  S  + G    +G   F+ + + C + C FC V + R   +    
Sbjct: 100 KQILREHNLHTVCEEASCPNIGECFGKGTATFMIMGDKCTRRCPFCDVGHGRPDPL--DA 157

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
            + V+ AR +    +  + +   +    R    DG    F + +  + E+    ++   T
Sbjct: 158 EEPVNLARTIGALKLRYVVITSVD----RDDLRDGGAGHFVECIRQVRELSPQTQIEILT 213

Query: 268 SHPRD-MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
              R  +   L   +     +M +    V     R+ K            +++   +++ 
Sbjct: 214 PDFRGRLDRALAILNAAPPDVMNHNLETV----PRLYKEARPGSDYAHSLKLLKDFKALH 269

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           PD+A  S  +VG  GET+++    M  +           +Y
Sbjct: 270 PDVATKSGLMVGL-GETEEEILQVMRDLRAHDVDMLTIGQY 309


>gi|291549194|emb|CBL25456.1| Coproporphyrinogen III oxidase and related Fe-S oxidoreductases
           [Ruminococcus torques L2-14]
          Length = 476

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 34/204 (16%), Positives = 73/204 (35%), Gaps = 22/204 (10%)

Query: 173 KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNV 232
           K G + +  I   C   C++C          S  +++  D+  + +D  + E+    + +
Sbjct: 148 KNGYSLYAGIPF-CPSICSYCSFS-------SSPIAEWKDQVDRYLDAMIKELKATAKLM 199

Query: 233 NAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMS----------DCLIKAH 281
                  +  G     +     L  + G +R  +   H  + +             ++  
Sbjct: 200 QGKTLDTVYIGGGTPTTLEADQLDRLLGTIRENFDLEHVLEFTVEAGRPDSITREKLELI 259

Query: 282 GDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPG 341
                 +  + +  Q+   + L  + R+HT  +  QI    R +  D  I+ D I G PG
Sbjct: 260 RKYP--VTRISVNPQTMQQKTLDLVGRKHTVEDVEQIFHLARELGFD-NINMDLIAGLPG 316

Query: 342 ETDDDFRATMDLVDKIGYAQAFSF 365
           E   D + T++ ++K+        
Sbjct: 317 EDAADMQDTLEKIEKLHPDSLTVH 340


>gi|148269719|ref|YP_001244179.1| radical SAM domain-containing protein [Thermotoga petrophila RKU-1]
 gi|170288394|ref|YP_001738632.1| radical SAM domain-containing protein [Thermotoga sp. RQ2]
 gi|167016715|sp|A5IK80|Y582_THEP1 RecName: Full=UPF0313 protein Tpet_0582
 gi|226707770|sp|B1L9F1|Y596_THESQ RecName: Full=UPF0313 protein TRQ2_0596
 gi|147735263|gb|ABQ46603.1| Radical SAM N-terminal domain protein [Thermotoga petrophila RKU-1]
 gi|170175897|gb|ACB08949.1| Radical SAM domain protein [Thermotoga sp. RQ2]
          Length = 567

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 56/281 (19%), Positives = 93/281 (33%), Gaps = 54/281 (19%)

Query: 184 EGCDKFCTFCVVPYTRGIEIS-RSLSQVVDEARKLIDNGVCEITLL--GQNVNAWRGKGL 240
            GC   C+FC +   +   +S RS   +++E R L      + T+   G       G   
Sbjct: 301 RGCFGSCSFCALTQHQTTHVSYRSKDSILEEVRILTKKKDFKGTITDVGGPTANLYGSSC 360

Query: 241 DGEKCT----------------------FSDLLYSLSEIKGLVRLRYTTSHPRDM---SD 275
              +                        F  LL S+ +I G+  +  ++    D      
Sbjct: 361 SIRETKGQCQKFCLYPSVCKIVRPNHDEFISLLESIRKIPGVRNVFVSSGIRHDFVLAEK 420

Query: 276 CLIKAHGDLDVLMP-YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAIS-- 332
                  +L    P  L L  +    ++L  M +      + +   R  ++   I     
Sbjct: 421 DPDVFIRELVKYTPGQLKLAPEHAHPKVLSLMRKP-PVELFLEFKRRFETLAKKIGKRKY 479

Query: 333 --SDFIVGFPGETDDDFRATMDLV-DKIGYAQAFSFKYSPRLGTPGSNML-----EQVDE 384
               FIVG PGE   +     D +   +GY       ++P  GT  + M          E
Sbjct: 480 VIGYFIVGHPGEGWRENNYLRDFILKHLGYFPQQIQIFTPTPGTVSTAMYYSGLDPFTGE 539

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK 425
            V  ER L ++ K++E               VL +K G+EK
Sbjct: 540 KVHVERSLKVRNKMKEN--------------VLFKKKGREK 566


>gi|89899763|ref|YP_522234.1| radical SAM family protein [Rhodoferax ferrireducens T118]
 gi|89344500|gb|ABD68703.1| Radical SAM [Rhodoferax ferrireducens T118]
          Length = 530

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 58/373 (15%), Positives = 115/373 (30%), Gaps = 41/373 (10%)

Query: 95  IKEGGDLLVVVAGC-VAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTD 153
             +  ++ VV+ G  V+   GE+ + R  + + V+        P+L      G + +   
Sbjct: 92  KNQRPEVKVVLGGPEVSHELGEQEIVR--LADHVITGWGDVSFPKLCRALLHGSQPLMKI 149

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTA---FLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
            + E+      ++         +     ++    GC   C FC+    +    +  L   
Sbjct: 150 IAGEEPPLDQLVLPYAEYTDADLAHRLLYVEASRGCPFKCEFCLSSLDKT-SRAFDLDAF 208

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270
           +DE + L   G      + +  N      +D         L  L     L    +     
Sbjct: 209 LDEMQGLYRRGARNFKFVDRTFNLK----VDSSVRILQFFLDRLPAPDALGNEIFVHFEV 264

Query: 271 R--DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
               + D L          +  L + VQS S  + + ++R+    +    +  + +   +
Sbjct: 265 VPDHLPDRLKVLIAKFPPGVLQLEVGVQSFSIAVQQRVSRKQDNAKTEANLRWLVAQS-N 323

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP--------GSNMLE 380
             + +D I G PGET + F    D +  +G  +          GTP        G     
Sbjct: 324 AHLHADLIFGLPGETLESFATGFDRLHGLGPHEIQLGILKRLRGTPIVRHSTPYGMVYDP 383

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACV---G---QIIEVLIEKHGK----------- 423
                V+    +      R  + S     +   G   + + VL+                
Sbjct: 384 DPPYTVRQTGAVDAATLQRFARFSRYWDMIANSGRFTRTLLVLLAGPSPFYFFLDFADWQ 443

Query: 424 --EKGKLVGRSPW 434
             + G   G +P 
Sbjct: 444 WLKSGTTSGLTPE 456


>gi|313673278|ref|YP_004051389.1| hypothetical protein Calni_1318 [Calditerrivibrio nitroreducens DSM
           19672]
 gi|312940034|gb|ADR19226.1| conserved hypothetical protein [Calditerrivibrio nitroreducens DSM
           19672]
          Length = 300

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 39/212 (18%), Positives = 71/212 (33%), Gaps = 21/212 (9%)

Query: 180 LTIQEG--CDKF--------CTFC-VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLL 228
           ++I  G  C           C +C    +      S    QV+    +L+  GV    + 
Sbjct: 21  ISIDAGLTCPNRDGTKGEGGCIYCDNSSFVFTKGYSIK-DQVLKGIERLVKKGVNRFVIY 79

Query: 229 GQNVNAWRGKGLDG-EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL 287
            Q+ +          +    S +   +  I    R              LI      D+ 
Sbjct: 80  FQSYSNTYCNDEYFIDMIKESLIDDRIVGIFIGTRPDVINEKKLQFLTQLID---RYDIF 136

Query: 288 MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDF 347
           M Y    +QS  D+ LK +NR H+  ++ + +   +S    + I++  I+G P ET  + 
Sbjct: 137 MEY---GLQSAHDKTLKFINRGHSVDDFEKAVLLTKSF--GLKITTHLILGLPYETKSEM 191

Query: 348 RATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
             +   V  +G             GT  + + 
Sbjct: 192 IDSTKYVASLGIDAVKFHHLHIVKGTKLAELY 223


>gi|310829768|ref|YP_003962125.1| Radical SAM domain protein [Eubacterium limosum KIST612]
 gi|308741502|gb|ADO39162.1| Radical SAM domain protein [Eubacterium limosum KIST612]
          Length = 499

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 51/273 (18%), Positives = 91/273 (33%), Gaps = 30/273 (10%)

Query: 103 VVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFE- 161
           V V G       EEIL R P ++  +  +    +  L+        +    Y  +D +E 
Sbjct: 103 VTVYGYYPTFAYEEILDRCPDIDTCMLGENEITIINLMANLPDYSGLKGLAYRSKDGYEA 162

Query: 162 ----------RLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV-PYTRGIEIS------ 204
                      L           G    +    GC   CTFC + PY    E+       
Sbjct: 163 SRGELVRDLDSLPFPLRKAASYPGGEVNIFGSRGCYGGCTFCYINPYYGADEMHCPKWRG 222

Query: 205 RSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           RS   ++ E  ++I             N     G G  G++         L+ +     +
Sbjct: 223 RSPENIIAEIDQIIAQTDYRYFYFTDPNF---YGPGKAGKERVL-----KLAALLKERNI 274

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           R+     R            +D  +  + + ++SG D  LK +N+  T  +    +  +R
Sbjct: 275 RFG-IEARANDIEPETTRALVDAGLQNILVGLESGKDESLKRLNKYTTVADNENALRVLR 333

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
                I  S  FI+  P  T +D +  ++ + +
Sbjct: 334 EA--GIEPSVGFIMFEPDSTINDLKINLEFLKR 364


>gi|115352988|ref|YP_774827.1| lipoyl synthase [Burkholderia ambifaria AMMD]
 gi|170701702|ref|ZP_02892642.1| lipoic acid synthetase [Burkholderia ambifaria IOP40-10]
 gi|172061840|ref|YP_001809492.1| lipoyl synthase [Burkholderia ambifaria MC40-6]
 gi|115282976|gb|ABI88493.1| lipoic acid synthetase [Burkholderia ambifaria AMMD]
 gi|170133395|gb|EDT01783.1| lipoic acid synthetase [Burkholderia ambifaria IOP40-10]
 gi|171994357|gb|ACB65276.1| lipoic acid synthetase [Burkholderia ambifaria MC40-6]
          Length = 330

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 79/221 (35%), Gaps = 12/221 (5%)

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
           + +  ++++    E  S  + G    +G   F+ + + C + C FC V + R   +    
Sbjct: 65  KTILREHNLHTVCEEASCPNIGECFGKGTATFMIMGDKCTRRCPFCDVGHGRPDPL--DA 122

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
            +  + AR +    +  + +   +    R    DG    F + +  + E     R+   T
Sbjct: 123 DEPKNLARTIAALKLKYVVITSVD----RDDLRDGGAGHFVECIREVREQSPETRIEILT 178

Query: 268 SHPRDMSDCLIKAH-GDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
              R   D  I         +M +    V     R+ K            +++   +++ 
Sbjct: 179 PDFRGRLDRAISILNAAPPDVMNHNLETV----PRLYKEARPGSDYAHSLKLLKDFKALH 234

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           PD+A  S  +VG  GET+++    M  +           +Y
Sbjct: 235 PDVATKSGLMVGL-GETEEEILQVMRDLRAHDVDMLTIGQY 274


>gi|159149049|dbj|BAF92597.1| methyltransferase [Streptomyces pactum]
 gi|212379255|gb|ACJ24871.1| putative C-methyltransferase [Streptomyces pactum]
          Length = 578

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 49/306 (16%), Positives = 80/306 (26%), Gaps = 34/306 (11%)

Query: 79  KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPE 138
                +     L          + V + G      G+ I  R P  + V   +    +  
Sbjct: 97  MYDLHIVDAVRLLRCVRAADPSVFVAIGGAFCTYNGKLIAERIPEADCVAFGEGELTVEG 156

Query: 139 LLE--------------------RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTA 178
           L+E                    R R        D S +    R  ++           A
Sbjct: 157 LMECLAAGRDWRSVPGLWFWQDGRVRSSGPPKLPDLSKQAWPARDVLIHHREAGIPTPRA 216

Query: 179 FLTIQEGCDKFCTFCVVPYT----RGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVN 233
                 GC   CTFC  P       G    R +   VDE   L    G   +     N  
Sbjct: 217 STYTSRGCHAKCTFCYAPRQPGVENGPWRVRPIGDAVDEIEYLQREFGTRFLWFNDDNFG 276

Query: 234 AWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL-MPYLH 292
                G         ++L    +I       +      D      +A   L    M    
Sbjct: 277 GAFQDGYHHAVGFAEEILRRGLKIN------FHCEFRVDTGLIDREALRTLRRAGMDLAL 330

Query: 293 LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352
           L +++GS  ++K   +  T           +     I +   +I+  PG T D+    + 
Sbjct: 331 LGMETGSPGMMKRFRKGTTVAYNFDAARLFKE--EGIELEPGWIMIEPGTTLDELWENLK 388

Query: 353 LVDKIG 358
            +    
Sbjct: 389 FIVTAR 394


>gi|327314569|ref|YP_004330006.1| radical SAM protein YgiQ [Prevotella denticola F0289]
 gi|326944164|gb|AEA20049.1| radical SAM protein YgiQ [Prevotella denticola F0289]
          Length = 712

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 49/310 (15%), Positives = 95/310 (30%), Gaps = 64/310 (20%)

Query: 127 VVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT--------- 177
           +           +L+       VV+  Y      E  +  D  Y R+             
Sbjct: 283 IEEESNKKHAERILQAVDNVYAVVNPPYPTMTTEEVDAAYDLPYTREPHPKYRGKTIPAY 342

Query: 178 ----AFLTIQEGCDKFCTFCVVPYTRGIEIS-RSLSQVVDEARKLIDN----------GV 222
                 + I  GC   C FC +   +G  IS RS   ++ E +++++           G 
Sbjct: 343 EMIKHSVNIHRGCFGGCAFCTISAHQGKFISCRSKESILKEVKQVMEMPDFKGYLSDLGG 402

Query: 223 CEITLLGQ---------------NVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
               + G                 VN      L+ +     ++ +++ E+ G+ +    +
Sbjct: 403 PSANMYGMAGRNQRACEHCKRPSCVNPEICPNLETDHTRLLEIYHAVDELPGIKKSFIGS 462

Query: 268 SHPRDMSDCLIKAHGDLD---------------VLMPYLHLPVQSGSDRILKSMNRR--- 309
               D+   L+    D                  +   L +  +  SDR+LK M +    
Sbjct: 463 GVRYDL---LLHRSKDEKSNEAARQYTRELITRHVSGRLKVAPEHTSDRVLKLMRKPSFQ 519

Query: 310 --HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
             +   +    I+R   +R  I     FI   PG  ++D      L   + +       +
Sbjct: 520 QFYAFKKIFDRINREEGLRQQIIPY--FISSHPGCQEEDMAELAVLTKDLDFHLEQVQDF 577

Query: 368 SPRLGTPGSN 377
           +P   T  + 
Sbjct: 578 TPTPMTVSTE 587


>gi|218902082|ref|YP_002449916.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Bacillus cereus AH820]
 gi|218536280|gb|ACK88678.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Bacillus cereus AH820]
          Length = 495

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 43/247 (17%), Positives = 85/247 (34%), Gaps = 13/247 (5%)

Query: 129 GPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
           G        EL E     +  ++    + D   +L++V   Y  K  V+ ++ I   C  
Sbjct: 126 GMSKEEAHQELRESYLIHEEKIELLQRIVD--CQLAVVPDLYRLKEEVSIYIGIPF-CPT 182

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG-------LD 241
            C +C  P         S+   +      +      +   G  V      G        +
Sbjct: 183 KCAYCTFPAYAINGRQGSVDSFLGGLHYEVREIGKFLKEKGVTVTTIYYGGGTPTSITAE 242

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
                + ++  +  ++K +  +      P  ++   ++        +  + +  QS    
Sbjct: 243 EMDMLYEEMYEAFPDVKNVREITVEAGRPDTITPAKLEVL--NKWNIDRISINPQSYHQE 300

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
            LK++ R HT  E  +     R +  +  I+ D I+G PGE  D F+ T+D  +K+    
Sbjct: 301 TLKAIGRHHTVEETIEKYHLAREMGMN-NINMDLIIGLPGEGLDIFKHTLDETEKLMPES 359

Query: 362 AFSFKYS 368
                 S
Sbjct: 360 LTVHTLS 366


>gi|91201681|emb|CAJ74741.1| hypothetical protein kuste3978 [Candidatus Kuenenia
           stuttgartiensis]
          Length = 616

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 39/192 (20%), Positives = 78/192 (40%), Gaps = 27/192 (14%)

Query: 183 QEGCDK-FCTFCVVPYTRGI-EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL 240
             GC    C FC           ++ +SQ++++   L +           + + +     
Sbjct: 343 TRGCYWGRCKFCDHGEGYTAGYRAKKISQIINDIHYLQNKY---------HTHNFHFPDE 393

Query: 241 DGEKCTFSDLLYSLSE----IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQ 296
                 F  L Y+L +    I  +  LR+  S   +    + +   +      YLHL  +
Sbjct: 394 SYPPALFKKLSYALIKNNMNIAWMTHLRFENSLTNE---EIWETAANAG--CKYLHLGFE 448

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFI--VGFPGETDDDFRATMDLV 354
           SGS+RILK M++  T      I+ ++  +  +  I +  +   GFPGE+ +D + T+  +
Sbjct: 449 SGSERILKRMDKSTTT----NIMRKMLKISSNAGIWNHVMGFFGFPGESYEDAQQTIQFL 504

Query: 355 DKIG-YAQAFSF 365
           ++   +  +  F
Sbjct: 505 EENKEFVHSIGF 516


>gi|158334855|ref|YP_001516027.1| radical SAM domain/B12 binding domain-containing protein
           [Acaryochloris marina MBIC11017]
 gi|158305096|gb|ABW26713.1| radical SAM domain/ B12 binding domain protein [Acaryochloris
           marina MBIC11017]
          Length = 537

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 56/347 (16%), Positives = 115/347 (33%), Gaps = 38/347 (10%)

Query: 57  NSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEE 116
           +  D A++++L+   ++    E + + +G                 V V G  A +  E+
Sbjct: 61  SDWDWAEMVILSGMIVQ---KEDMLNLVGE---------SHRRGKKVAVGGPFATSVPED 108

Query: 117 ILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGV 176
           +  ++   + ++  +    LP  +E    G        + +       I      +    
Sbjct: 109 L--QAVGADYLILDEGEITLPMFIEAIERGDESGVYRATEKPAVTETPIPRFDLLKFPAY 166

Query: 177 -TAFLTIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVCEITLLGQNVNA 234
               +    GC   C FC +    G +  +++  Q++ E  +L + G      +  +   
Sbjct: 167 DNMSVQFSRGCPFQCEFCDIIVLYGRKPRTKTPQQLIAELDRLCELGWRGSVFMVDD--- 223

Query: 235 WRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM----SDCLIKAHGDLDVLMPY 290
                  G K     LL  L E        +T +    +     + L+    + +     
Sbjct: 224 ----NFIGNKRNVKLLLAELREWIAEKNYPFTFATEASVDLAQDEELMDLMIECN--FNS 277

Query: 291 LHLPVQSGSDRILKSMNRR-HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           + L +++  +  LK   +  +T     + ID +      + I + FI+GF GE       
Sbjct: 278 VFLGIETPDEDSLKVTKKFQNTRDSLSESIDTMSEK--GLRIMAGFIIGFDGEKKGAGDR 335

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQK 396
               V+K     A          T   + LE      K  RL+  Q+
Sbjct: 336 ITRFVEKTNIPIALFSMLQALPNTALWHRLE------KEGRLIQGQE 376


>gi|329847216|ref|ZP_08262244.1| magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative
           cyclase [Asticcacaulis biprosthecum C19]
 gi|328842279|gb|EGF91848.1| magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative
           cyclase [Asticcacaulis biprosthecum C19]
          Length = 517

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 45/302 (14%), Positives = 94/302 (31%), Gaps = 33/302 (10%)

Query: 99  GDLLVVVAGCVAQAEGEEILRRSPIVNVVV---GPQTYYRLPELLERARFGKRVVDTDYS 155
            +L V+  G       ++ILR  P  + +V   G +T   L   L        V    + 
Sbjct: 94  PNLKVIYGGVFPTYHWQDILRDEPQFDYIVCGEGEETCRDLVRALASDTDLATVKGIAFR 153

Query: 156 VEDKFERLSIVDGGYNRKRGVTAF------------------LTIQEGCDKFCTFCVVPY 197
            +    +    +   +       +                  +    GC   C +C    
Sbjct: 154 RDGTPHKTPSREMLADLDAWRIGWELIDFARYSYWGGKRAVVVQFSRGCPHPCNYCGQRG 213

Query: 198 TRGIEISRSLSQV-VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256
                  R+  +   + AR   D+GV       +N  +         K  +   L +L  
Sbjct: 214 FWTQWRHRNPERFAAEIARLHRDHGVEVFNFADENPTSS--------KKMWKRFLEALIA 265

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
            + +      ++   D+       H      +    + +++  + +L  + +  +    R
Sbjct: 266 -EKVSVTLVGSTRADDIVRDRDHLHLYKQAGVERFLMGMENTDEAVLSKIRKGGSTTTDR 324

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
           + I  +R     +   + ++VGF  ETD D+   +  +      Q  S   +P   TP  
Sbjct: 325 EAIRLMRQ--HGMLSMATWVVGFEEETDRDYWRQLRQLLAYDPDQIQSVYVTPHRWTPFF 382

Query: 377 NM 378
            +
Sbjct: 383 GL 384


>gi|325856872|ref|ZP_08172370.1| radical SAM protein YgiQ [Prevotella denticola CRIS 18C-A]
 gi|325483245|gb|EGC86222.1| radical SAM protein YgiQ [Prevotella denticola CRIS 18C-A]
          Length = 712

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 49/310 (15%), Positives = 95/310 (30%), Gaps = 64/310 (20%)

Query: 127 VVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT--------- 177
           +           +L+       VV+  Y      E  +  D  Y R+             
Sbjct: 283 IEEESNKKHAERILQAVDNVYAVVNPPYPTMTTEEVDAAYDLPYTREPHPKYRGKTIPAY 342

Query: 178 ----AFLTIQEGCDKFCTFCVVPYTRGIEIS-RSLSQVVDEARKLIDN----------GV 222
                 + I  GC   C FC +   +G  IS RS   ++ E +++++           G 
Sbjct: 343 EMIKHSVNIHRGCFGGCAFCTISAHQGKFISCRSKESILKEVKQVMEMPDFKGYLSDLGG 402

Query: 223 CEITLLGQ---------------NVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
               + G                 VN      L+ +     ++ +++ E+ G+ +    +
Sbjct: 403 PSANMYGMAGRNQRACEHCKRPSCVNPEICPNLETDHTRLLEIYHAVDELPGIKKSFIGS 462

Query: 268 SHPRDMSDCLIKAHGDLD---------------VLMPYLHLPVQSGSDRILKSMNRR--- 309
               D+   L+    D                  +   L +  +  SDR+LK M +    
Sbjct: 463 GVRYDL---LLHRSKDEKSNEAARQYTRELITRHVSGRLKVAPEHTSDRVLKLMRKPSFQ 519

Query: 310 --HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
             +   +    I+R   +R  I     FI   PG  ++D      L   + +       +
Sbjct: 520 QFYAFKKIFDRINREEGLRQQIIPY--FISSHPGCQEEDMAELAVLTKDLDFHLEQVQDF 577

Query: 368 SPRLGTPGSN 377
           +P   T  + 
Sbjct: 578 TPTPMTVSTE 587


>gi|163938782|ref|YP_001643666.1| coproporphyrinogen III oxidase [Bacillus weihenstephanensis KBAB4]
 gi|229010298|ref|ZP_04167507.1| Oxygen-independent coproporphyrinogen III oxidase 2 [Bacillus
           mycoides DSM 2048]
 gi|229056635|ref|ZP_04196041.1| Oxygen-independent coproporphyrinogen III oxidase 2 [Bacillus
           cereus AH603]
 gi|229131808|ref|ZP_04260679.1| Oxygen-independent coproporphyrinogen III oxidase 2 [Bacillus
           cereus BDRD-ST196]
 gi|229165809|ref|ZP_04293576.1| Oxygen-independent coproporphyrinogen III oxidase 2 [Bacillus
           cereus AH621]
 gi|163860979|gb|ABY42038.1| Coproporphyrinogen dehydrogenase [Bacillus weihenstephanensis
           KBAB4]
 gi|228617623|gb|EEK74681.1| Oxygen-independent coproporphyrinogen III oxidase 2 [Bacillus
           cereus AH621]
 gi|228651646|gb|EEL07610.1| Oxygen-independent coproporphyrinogen III oxidase 2 [Bacillus
           cereus BDRD-ST196]
 gi|228720704|gb|EEL72262.1| Oxygen-independent coproporphyrinogen III oxidase 2 [Bacillus
           cereus AH603]
 gi|228750993|gb|EEM00810.1| Oxygen-independent coproporphyrinogen III oxidase 2 [Bacillus
           mycoides DSM 2048]
          Length = 496

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 51/308 (16%), Positives = 98/308 (31%), Gaps = 22/308 (7%)

Query: 77  AEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG-EEILRRSPIV--------NVV 127
            E     L      K    +    +  V    + Q  G E+       V         + 
Sbjct: 66  EETFAKDLSAFTEEKERMKQVKHVVSYVYLSVLQQLTGLEQSWGILTGVRPTKLLHKLLQ 125

Query: 128 VGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCD 187
            G        EL E     +  ++    + D   +L++V   Y  K  V+ ++ I   C 
Sbjct: 126 NGMSKEEAHKELRESYLIHEEKIELLQRIVD--CQLAVVPDLYRLKEEVSIYIGIPF-CP 182

Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG-------L 240
             C +C  P         S+   +      +      +   G  V      G        
Sbjct: 183 TKCAYCTFPAYAINGRQGSVDSFLGGLHYEVREIGKFLKEKGVTVTTIYYGGGTPTSITA 242

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300
           +     + ++  +  ++K +  +      P  ++   ++        +  + +  QS   
Sbjct: 243 EEMDMLYEEMYQAFPDVKDVREVTVEAGRPDTITPAKLEVL--NKWNIDRISINPQSYHQ 300

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
             LK++ R HT  E  +     R +  +  I+ D I+G PGE  D F+ T+D  +K+   
Sbjct: 301 ETLKAIGRHHTVEETIEKYHLAREMGMN-NINMDLIIGLPGEGLDIFKHTLDETEKLMPE 359

Query: 361 QAFSFKYS 368
                  S
Sbjct: 360 SLTVHTLS 367


>gi|89901849|ref|YP_524320.1| radical SAM family protein [Rhodoferax ferrireducens T118]
 gi|89346586|gb|ABD70789.1| Radical SAM [Rhodoferax ferrireducens T118]
          Length = 530

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 58/373 (15%), Positives = 115/373 (30%), Gaps = 41/373 (10%)

Query: 95  IKEGGDLLVVVAGC-VAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTD 153
             +  ++ VV+ G  V+   GE+ + R  + + V+        P+L      G + +   
Sbjct: 92  KNQRPEVKVVLGGPEVSHELGEQEIVR--LADHVITGWGDVSFPKLCRALLHGSQPLMKI 149

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTA---FLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
            + E+      ++         +     ++    GC   C FC+    +    +  L   
Sbjct: 150 IAGEEPPLDQLVLPYAEYTDADLAHRLLYVEASRGCPFKCEFCLSSLDKT-SRAFDLDAF 208

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270
           +DE + L   G      + +  N      +D         L  L     L    +     
Sbjct: 209 LDEMQGLYRRGARNFKFVDRTFNLK----VDSSVRILQFFLDRLPAPDALGNEIFVHFEV 264

Query: 271 R--DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
               + D L          +  L + VQS S  + + ++R+    +    +  + +   +
Sbjct: 265 VPDHLPDRLRVLVAKFPPGVLQLEVGVQSFSIAVQQRVSRKQDNAKTEANLRWLVAQS-N 323

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP--------GSNMLE 380
             + +D I G PGET + F    D +  +G  +          GTP        G     
Sbjct: 324 AHLHADLIFGLPGETLESFATGFDRLHGLGPHEIQLGILKRLRGTPIVRHSTPYGMVYDP 383

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACV---G---QIIEVLIEKHGK----------- 423
                V+    +      R  + S     +   G   + + VL+                
Sbjct: 384 DPPYTVRQTGAVDAATLQRFARFSRYWDMIANSGRFTRTLPVLLAGPSPFYSFLDFADWQ 443

Query: 424 --EKGKLVGRSPW 434
             + G   G +P 
Sbjct: 444 WLKSGTTSGLTPE 456


>gi|258592773|emb|CBE69082.1| putative Coproporphyrinogen dehydrogenase [NC10 bacterium 'Dutch
           sediment']
          Length = 458

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 44/241 (18%), Positives = 81/241 (33%), Gaps = 23/241 (9%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C   CT+C      G   S  + + +D  R      +  +  +  +V     +   G   
Sbjct: 62  CRTKCTYCDFLAYYGRSDS-EIERYLDLLR----QDIRVVAGMAGHVAVESMEFGGGTPS 116

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL--------HLPVQS 297
             S  +  ++ I   VR R+  S   D++  ++        LM              VQ 
Sbjct: 117 LLS--VEQVAAIMDGVRARFRFSPDADVTMEVLPDTSITTNLMAGWKREGITRLSFGVQF 174

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
             D + K +NR  T  E  +I+  +R    D   S D + G P +T++ +R T   + ++
Sbjct: 175 LDDDLKKKLNREDTTEEILRILRSVREAGFD-DFSVDLMCGLPEQTEESWRHTCQEILRL 233

Query: 358 GYAQAFSFKYSPRL------GTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVG 411
                  F  S R           + +          E    L +   ++    N   +G
Sbjct: 234 HPPHVCVFPVSVRHEGIALYNYRAALLRPSRSRQTYEEAYQFLLEAGYQRTTRHNFR-LG 292

Query: 412 Q 412
           +
Sbjct: 293 K 293


>gi|78356744|ref|YP_388193.1| Elongator protein 3/MiaB/NifB [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78219149|gb|ABB38498.1| Elongator protein 3/MiaB/NifB [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 860

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 42/238 (17%), Positives = 84/238 (35%), Gaps = 21/238 (8%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGK 238
           L I  GC + C FC           RS+  + +   + + + G  E++ L  +       
Sbjct: 254 LEIGRGCTRGCRFCQAGIIYRPARERSVDHLQNLLEECLASTGYDELSFLSLSTG----- 308

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
                K  F   +   ++ +  V L   +     + D ++    ++        L  ++G
Sbjct: 309 DFSALKTLFMSTVDRCAKEQ--VSLSLPSLRVGSIDDDIMGRMAEIRR--TGATLAPEAG 364

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           S R+   +N+  T       + ++        +   F++G P ET +D  A +DL  K+ 
Sbjct: 365 SQRLRDVINKGITEEALMLHVQKLFQHGWQ-QVKLYFMIGLPTETYEDLDAIVDLCRKVR 423

Query: 359 YA---------QAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFND 407
            A          A    + P+  TP      Q+      ER+  L+   + ++     
Sbjct: 424 GAAGRVRRLQVTAAISPFVPKPHTP-FQWERQLTLPEIRERIQYLRDAFKREKSMKMR 480


>gi|322417678|ref|YP_004196901.1| hypothetical protein GM18_0136 [Geobacter sp. M18]
 gi|320124065|gb|ADW11625.1| Protein of unknown function DUF2344 [Geobacter sp. M18]
          Length = 829

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 81/229 (35%), Gaps = 28/229 (12%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGK 238
           + I  GC + C FC   Y       RS  +V +   + + N G  E++LL  +       
Sbjct: 255 VEISRGCTRGCRFCQAGYIYRPVRERSPERVFEIVDEALSNTGYDEVSLLSLSTG----- 309

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
                      L+   S  K  V L   +     +S  + +    +        L  ++G
Sbjct: 310 DYGCLTPLLKGLMDRYSAQKKAVSLP--SMRVGSLSPEMAEEIRRVRK--TGFTLAPEAG 365

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA--ISSDFIVGFPGETDDDFRATMDLVDK 356
           S+R+   +N+  T      ++D  R+V  +    I   F++G P ET +D    + L  +
Sbjct: 366 SERLRSVINKGITEE---ALLDNARAVYGNGWRLIKLYFMIGLPTETMEDVDGIVALSRE 422

Query: 357 IGY----------AQAFSFKYSPRLGTPGSNMLEQVDEN--VKAERLLC 393
           +                   + P+  TP      Q+ E   V  +R L 
Sbjct: 423 VKRQGKLAGNGGDVNVSVSSFVPKPHTP-FQWEPQITEEEIVVKQRHLR 470


>gi|94267016|ref|ZP_01290661.1| Radical SAM [delta proteobacterium MLMS-1]
 gi|93452290|gb|EAT02931.1| Radical SAM [delta proteobacterium MLMS-1]
          Length = 909

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 48/258 (18%), Positives = 95/258 (36%), Gaps = 20/258 (7%)

Query: 158 DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKL 217
           D     S       R       L I  GC + C FC           R  ++++ EA   
Sbjct: 239 DAVAPASPPLVPATRIVHDRLGLEIARGCTRGCRFCQAGIIYRPVREREPARLLAEALAH 298

Query: 218 IDN-GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDC 276
           I+  G  E+ LL  +   +              L+ +L++ K  V +   +     ++  
Sbjct: 299 IEQTGFDEVALLSLSSGDYACINE-----LLGRLMDALAQRK--VSVSLPSMRVGTLTAE 351

Query: 277 LIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFI 336
           +++    +        L  ++GS+R+ + +N+  +  +     +   ++   + I   F+
Sbjct: 352 MMEQIRRVRK--TGFTLAPEAGSERLRRVLNKGISEADLLSAAEAAFALGWQV-IKLYFM 408

Query: 337 VGFPGETDDDFRATMDLVDKIGYA--------QAFSFKYSPRLGTPGSNMLEQVDENVKA 388
            G P ETD+D  A ++L  K+              S  + P+  TP      Q+      
Sbjct: 409 FGLPTETDEDLAAMVELAHKVSQTGKGGRCGVTVSSAIFVPKPHTP-FEREPQMGIEEGF 467

Query: 389 ERLLCLQKKLREQQVSFN 406
            R+  L++KLR ++    
Sbjct: 468 ARIDYLKQKLRARKFKLK 485


>gi|323704204|ref|ZP_08115783.1| oxygen-independent coproporphyrinogen III oxidase
           [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323536270|gb|EGB26042.1| oxygen-independent coproporphyrinogen III oxidase
           [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 378

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 35/205 (17%), Positives = 73/205 (35%), Gaps = 22/205 (10%)

Query: 186 CDKFCTFCVVPYTRGIEISRS--LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
           C + C +C       +E S       ++ E +   +            +         G 
Sbjct: 15  CKRKCYYCDFNSYANMEDSFFSFKEAIIKEIKTRKEE-----------LKDIYTSVYIGG 63

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY-------LHLPVQ 296
                     + EI   +   Y+ S+  +++  L     D + L  Y       + + +Q
Sbjct: 64  GTPNVLPPIYIEEILSEIYENYSLSNDAEITIELNPGLIDEEKLKSYKKAGVNRISIGLQ 123

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
           S  + +LK++ R HT  ++ +          +I I  D +   P +T ++F+ T+  V  
Sbjct: 124 SWQNNLLKAIGRIHTVSDFIENYGLASKYFDNINI--DIMYALPNQTFENFKETLTNVIA 181

Query: 357 IGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +  +    +      GTP  +M E+
Sbjct: 182 LKPSHISCYGLILEKGTPLYDMYER 206


>gi|120602688|ref|YP_967088.1| radical SAM domain-containing protein [Desulfovibrio vulgaris DP4]
 gi|120562917|gb|ABM28661.1| Radical SAM domain protein [Desulfovibrio vulgaris DP4]
          Length = 864

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 41/234 (17%), Positives = 80/234 (34%), Gaps = 22/234 (9%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGK 238
           L I  GC + C FC    T      RS+  +       +   G  +++ L  +       
Sbjct: 254 LEIGRGCTRGCRFCQAGMTYRPARERSVPNLQALLEDCLARTGYDDVSFLSLSTG----- 308

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
                K  F   +   +E +  V +   +     + D +++    +        L  ++G
Sbjct: 309 DFSALKTLFMQTVDRCAEEQ--VSVSLPSLRVGSIDDDIMRRMAGIRR--TGATLAPEAG 364

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           S R+   +N+  T       + ++        +   F++G P ET +D  A +DL  K+ 
Sbjct: 365 SQRLRDVINKGVTEEGLMLHVRKLFEHGWQ-QVKLYFMLGLPTETYEDLDAIVDLCRKVR 423

Query: 359 ----------YAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQ 402
                        A    + P+  TP      Q+       R+  L+   R ++
Sbjct: 424 DAAGRGVRRLQVTAAVSPFVPKPHTP-FQWEAQIPLEEIRARVGYLRDAFRREK 476


>gi|16330767|ref|NP_441495.1| hypothetical protein sll1242 [Synechocystis sp. PCC 6803]
 gi|6686353|sp|P42349|Y1242_SYNY3 RecName: Full=Uncharacterized methyltransferase sll1242; AltName:
           Full=ORF N
 gi|1653260|dbj|BAA18175.1| sll1242 [Synechocystis sp. PCC 6803]
          Length = 536

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 51/357 (14%), Positives = 107/357 (29%), Gaps = 44/357 (12%)

Query: 58  SMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEI 117
             D A++++++   +      +    +  I+  K          LV V G  A +  +E+
Sbjct: 62  EWDWAEVVIISGMIV------QRDDMVENIKEAKA------HGKLVAVGGPFATSVPDEV 109

Query: 118 LRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGV- 176
                  + ++  +    LP  +E    G+         +       I            
Sbjct: 110 QNA--GADFLILDEGEITLPLFVEALERGETAGIIRAQEKPDVTTTPIPRYDLLELDAYD 167

Query: 177 TAFLTIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW 235
           +  +    GC   C FC +    G +  ++  +Q++ E   L + G      +  +    
Sbjct: 168 SMSVQFSRGCPFQCEFCDIIVLYGRKPRTKEPAQLLRELDYLYELGWRRSVFMVDD---- 223

Query: 236 RGKGLDGEKCTFSDLLYSL----SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL 291
                 G K     LL  L     E +   R     S        L+    +       +
Sbjct: 224 ---NFIGNKRNVKLLLKELKVWQEEHQYPFRFNTEASVDLADDQELMDLMVEC--YFDAV 278

Query: 292 HLPVQSGSDRILKSMNRR-HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
            L +++  +  L+   +  +T       +D+I  ++  +   + FI+GF GE        
Sbjct: 279 FLGIETPDEESLEFTKKFQNTRNSLADSVDKI--IKAGLRPMAGFIIGFDGEKQGAGDRI 336

Query: 351 MDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFND 407
           +   ++                T                RL    + L E + + N 
Sbjct: 337 VRFAEQTAIPTTTFAMLQALPNTAL------------WHRLKRENRLLDESKGNINQ 381


>gi|188575879|ref|YP_001912808.1| Mg-protoporphyrin IX monomethyl ester oxidative cyclase
           [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188520331|gb|ACD58276.1| Mg-protoporphyrin IX monomethyl ester oxidative cyclase
           [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 506

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 47/267 (17%), Positives = 85/267 (31%), Gaps = 22/267 (8%)

Query: 126 VVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFE--RLSIVDGGYNRKRGVTAF-LTI 182
            + G          + R   G +  D   S    ++   +      + ++ G ++  +  
Sbjct: 176 WLAGVAQIATSQPAVARVHPGAQPPDARLSGLPAWDLVDMPRYQRFWQQRHGYSSLNMAA 235

Query: 183 QEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG 242
             GC   C +C  P        R   +V  E   L      +   +  ++  +    ++ 
Sbjct: 236 SRGCPFRCNWCAKPIWGNHYKRRGAEEVATEMIHLKRRFQPDHIWMADDIFGFHIDWVET 295

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
                      LS+  G   + +T     D++   + A       M    +  +SGS RI
Sbjct: 296 -------FAQRLSDADGA--IPFTIQTRADLASERMAAALARAGCMEAW-IGAESGSQRI 345

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           L  M +     E     +R+ +    I +     +G+ GE  DD  AT  LV +      
Sbjct: 346 LDKMTKGTQVGEVIAARERLGAQ--GIRVGFFIQLGYLGEELDDILATRALVTQANPDII 403

Query: 363 FSFKYSPRLGTPGSNMLEQVDENVKAE 389
                 P  GT          E VK +
Sbjct: 404 GVSVSYPLPGTKFY-------EEVKNQ 423


>gi|58582606|ref|YP_201622.1| Mg-protoporphyrin IX monomethyl ester oxidative cyclase
           [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|58427200|gb|AAW76237.1| Mg-protoporphyrin IX monomethyl ester oxidative cyclase
           [Xanthomonas oryzae pv. oryzae KACC10331]
          Length = 560

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 47/267 (17%), Positives = 85/267 (31%), Gaps = 22/267 (8%)

Query: 126 VVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFE--RLSIVDGGYNRKRGVTAF-LTI 182
            + G          + R   G +  D   S    ++   +      + ++ G ++  +  
Sbjct: 230 WLAGVAQIATSQPAVARVHPGAQPPDARLSGLPAWDLVDMPRYQRFWQQRHGYSSLNMAA 289

Query: 183 QEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG 242
             GC   C +C  P        R   +V  E   L      +   +  ++  +    ++ 
Sbjct: 290 SRGCPFRCNWCAKPIWGNHYKRRGAEEVATEMIHLKRRFQPDHIWMADDIFGFHIDWVET 349

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
                      LS+  G   + +T     D++   + A       M    +  +SGS RI
Sbjct: 350 -------FAQRLSDADGA--IPFTIQTRADLASERMAAALARAGCMEAW-IGAESGSQRI 399

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           L  M +     E     +R+ +    I +     +G+ GE  DD  AT  LV +      
Sbjct: 400 LDKMTKGTQVGEVIAARERLGAQ--GIRVGFFIQLGYLGEELDDILATRALVTQANPDII 457

Query: 363 FSFKYSPRLGTPGSNMLEQVDENVKAE 389
                 P  GT          E VK +
Sbjct: 458 GVSVSYPLPGTKFY-------EEVKNQ 477


>gi|84624490|ref|YP_451862.1| Mg-protoporphyrin IX monomethyl ester oxidative cyclase
           [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|84368430|dbj|BAE69588.1| Mg-protoporphyrin IX monomethyl ester oxidative cyclase
           [Xanthomonas oryzae pv. oryzae MAFF 311018]
          Length = 485

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 47/267 (17%), Positives = 85/267 (31%), Gaps = 22/267 (8%)

Query: 126 VVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFE--RLSIVDGGYNRKRGVTAF-LTI 182
            + G          + R   G +  D   S    ++   +      + ++ G ++  +  
Sbjct: 155 WLAGVAQIATSQPAVARVHPGAQPPDARLSGLPAWDLVDMPRYQRFWQQRHGYSSLNMAA 214

Query: 183 QEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG 242
             GC   C +C  P        R   +V  E   L      +   +  ++  +    ++ 
Sbjct: 215 SRGCPFRCNWCAKPIWGNHYKRRGAEEVATEMIHLKRRFQPDHIWMADDIFGFHIDWVET 274

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
                      LS+  G   + +T     D++   + A       M    +  +SGS RI
Sbjct: 275 -------FAQRLSDADGA--IPFTIQTRADLASERMAAALARAGCMEAW-IGAESGSQRI 324

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           L  M +     E     +R+ +    I +     +G+ GE  DD  AT  LV +      
Sbjct: 325 LDKMTKGTQVGEVIAARERLGAQ--GIRVGFFIQLGYLGEELDDILATRALVTQANPDII 382

Query: 363 FSFKYSPRLGTPGSNMLEQVDENVKAE 389
                 P  GT          E VK +
Sbjct: 383 GVSVSYPLPGTKFY-------EEVKNQ 402


>gi|217967627|ref|YP_002353133.1| radical SAM protein [Dictyoglomus turgidum DSM 6724]
 gi|217336726|gb|ACK42519.1| Radical SAM domain protein [Dictyoglomus turgidum DSM 6724]
          Length = 551

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 37/242 (15%), Positives = 87/242 (35%), Gaps = 32/242 (13%)

Query: 178 AFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLL-GQNVNAWR 236
           A   +  GC   C FC+  Y      S ++  +  + ++  D       ++   + N   
Sbjct: 229 ALCELVRGCKYQCRFCLAGYFYRPYRSSTIEVINKKLKEFYDFSPKIGLIVPAIDPN--- 285

Query: 237 GKGLDGEKCTFSDLLYSLSEI--KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP 294
                         L  +  +   G V L +++    D+++ L+            + + 
Sbjct: 286 ------------LNLREIENMFCNGEVLLSFSSLRLEDINEDLLSLIEKSGQ--KTVTIA 331

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
            ++G+DR+   +N+  +  +    ++++++ +    +   F++G P E  +D      LV
Sbjct: 332 PETGTDRLRIVLNKGFSNEDILNFVNKLKNYKIK-TLKLYFMLGLPTEKSEDIEGIYSLV 390

Query: 355 DKIGY------AQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDA 408
            +I               + P+  TP      Q ++    E ++  QK L E+       
Sbjct: 391 REIRKLNPKVEISVSFSTFIPKPHTPF-----QWEKMENEEYIVSTQKVLSEKLREIKRV 445

Query: 409 CV 410
            +
Sbjct: 446 RI 447


>gi|171473044|sp|A6V0B4|LIPA_PSEA7 RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
          Length = 327

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 34/214 (15%), Positives = 76/214 (35%), Gaps = 10/214 (4%)

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           + +    E  S  + G     G   F+ + + C + C FC V + R   +   + +  + 
Sbjct: 68  HKLHSVCEEASCPNLGECFSGGTATFMIMGDICTRRCPFCDVGHGRPKPL--DVDEPTNL 125

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
           A  + D  +  + +   +    R    DG    F+D L  + ++   ++L       R  
Sbjct: 126 AIAIADLRLKYVVITSVD----RDDLRDGGAQHFADCLREIRKLSPGIQLETLVPDYRGR 181

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
            D  ++   +     P +         R+ +S            ++ + + + P +   S
Sbjct: 182 MDIALEITANEP---PDVFNHNLETVPRLYRSSRPGSDFEWSLDLLQKFKQMVPHVPTKS 238

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
             ++G  GETD++    M  + +         +Y
Sbjct: 239 GLMLGL-GETDEEVIEVMQRMREHDIDMLTLGQY 271


>gi|153808724|ref|ZP_01961392.1| hypothetical protein BACCAC_03023 [Bacteroides caccae ATCC 43185]
 gi|149128550|gb|EDM19768.1| hypothetical protein BACCAC_03023 [Bacteroides caccae ATCC 43185]
          Length = 335

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 39/169 (23%), Positives = 67/169 (39%), Gaps = 10/169 (5%)

Query: 246 TFSDLLYSLSEIKGLV--RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
            F  +  ++ +  GL   R     ++P D+S   ++    L      + + +Q+  D  L
Sbjct: 28  DFQQIFKAIQKHYGLEDCREITLEANPDDLSKEYLQMLSALP--FNRISMGIQTFDDATL 85

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           K + RRH A    + + R R       IS D I G PGET + +   +     +      
Sbjct: 86  KLLKRRHNARTATEAVRRCREAGYQ-NISIDLIYGLPGETKERWEKDLRQAISLNVEHIS 144

Query: 364 SFKYSPRLGTPGSNMLEQ-----VDENVKAERLLCLQKKLREQQVSFND 407
           ++       TP  NML+Q     VDE+   E    L + L++      +
Sbjct: 145 AYHLIYEEDTPIYNMLKQHQICEVDEDSSLEFFTLLIEYLQKAGYEHYE 193


>gi|188991972|ref|YP_001903982.1| hypothetical protein xccb100_2577 [Xanthomonas campestris pv.
           campestris str. B100]
 gi|167733732|emb|CAP51937.1| Conserved hypothetical protein [Xanthomonas campestris pv.
           campestris]
          Length = 709

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 39/207 (18%), Positives = 62/207 (29%), Gaps = 19/207 (9%)

Query: 183 QEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG 242
             GC   C +C  P        RS   V  E   L      +   +  ++  +    ++ 
Sbjct: 430 SRGCPFRCNWCAKPIWGNHYKRRSAEDVAAEMIHLKRTFGPDHIWMADDIFGFHIDWVET 489

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
                      LS+  G   + +      D++     A            L  +SGS RI
Sbjct: 490 -------FAEQLSDADGA--IPFMIQTRADLASD-RMATALARAGCAEAWLGAESGSQRI 539

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           L  M +     +      R+ +    I +     +G+ GE   D  AT  LV +      
Sbjct: 540 LDKMTKGTQVADVIAARRRLGAR--GIRVGFFIQLGYLGEELVDILATRALVREAAPDLI 597

Query: 363 FSFKYSPRLGTPGSNMLEQVDENVKAE 389
                 P  GT          E VK +
Sbjct: 598 GVSVSYPLPGTKFY-------EEVKNQ 617


>gi|254415924|ref|ZP_05029681.1| radical SAM domain protein [Microcoleus chthonoplastes PCC 7420]
 gi|196177351|gb|EDX72358.1| radical SAM domain protein [Microcoleus chthonoplastes PCC 7420]
          Length = 548

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 43/275 (15%), Positives = 89/275 (32%), Gaps = 44/275 (16%)

Query: 79  KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPE 138
           +++  LG IR           +  V+V G       E++  + P   +V    +      
Sbjct: 139 ELWRNLGLIRRGLKRARTYNPEARVMVGGGAVSVFYEQLKTKLPNGTIV----SVGEGET 194

Query: 139 LLERARFGKRVVDT-----------DYSVEDKFERLSIVDGGYN-------------RKR 174
           LLE+   G+   D            D  + ++   L      Y+             ++ 
Sbjct: 195 LLEKLLRGESFADERCYVVGETQPRDRMIHERPTPLEKTACNYDYIQSIWSAFDYYFQES 254

Query: 175 GVTAFLTIQEGCDKFCTFCVVPYTRGIEISR-SLSQVVDEARKLIDNGVCEITLL-GQNV 232
                +  + GC   C +C+     G ++      +VV E R+L D G+        Q +
Sbjct: 255 DFYIGVQTKRGCPHNCCYCIYTVVEGKQVRINPADEVVAEMRQLYDRGIRNFWFTDAQFI 314

Query: 233 NAWRGKGLDGEKCTFSDLLYSLSEI--KGLVRLRY-TTSHPRDMSDCLIKAHGDLDVLMP 289
            A +            D +  L +I   G+  + +       +++  L          M 
Sbjct: 315 PARKFID---------DAVELLQKILDSGMTDIHWAAYIRADNLTPQLCDLMVKTG--MN 363

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           Y  + + SGS  +++ M   +           +++
Sbjct: 364 YFEIGITSGSQELVRKMRMGYNLRTVLANCRDLKA 398


>gi|162448959|ref|YP_001611326.1| hypothetical protein sce0689 [Sorangium cellulosum 'So ce 56']
 gi|161159541|emb|CAN90846.1| hypothetical protein sce0689 [Sorangium cellulosum 'So ce 56']
          Length = 497

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 54/257 (21%), Positives = 93/257 (36%), Gaps = 18/257 (7%)

Query: 125 NVVVGPQTYYRLPELLERARFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVT-AFLTI 182
           + VV       LP L+   + G+ + V     V  +       D    R   V    +  
Sbjct: 105 DAVVAEDPEANLPALIADFQRGELQPVYALPPVPPEQIPTYRYDLVDYRNNLVRLPGIEA 164

Query: 183 QEGCDKFCTFCVVPYTRGIE--ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL 240
             GC   C FCV     G E    R +  V+ + R  +        +   N  ++    L
Sbjct: 165 SRGCPFSCNFCV---LTGHEQYRYRPIDHVIRDIRDRMIFNQRIPGVTN-NAFSFLDNNL 220

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300
            G      +L  +L  +K +     T +  RD    L++  G       Y++  ++S + 
Sbjct: 221 GGSPRYLRELCEALMPLKKIWGCALTFNVLRD--PELVRLMGRAG--CRYVYTGLESLNP 276

Query: 301 RILKSMNRRHTA-YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
             + SMN+      E R++I   R+    I +S   +VG  G+T+D      + +  +G 
Sbjct: 277 ESISSMNKGQNKLSEVREVIQ--RAFASGIVLSFGLLVGADGDTNDYLERVPEYLHDLG- 333

Query: 360 AQAFSF--KYSPRLGTP 374
               +F     P   TP
Sbjct: 334 DHCPTFLGIVCPYPETP 350


>gi|262275988|ref|ZP_06053797.1| hypothetical protein VHA_002971 [Grimontia hollisae CIP 101886]
 gi|262219796|gb|EEY71112.1| hypothetical protein VHA_002971 [Grimontia hollisae CIP 101886]
          Length = 721

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 51/298 (17%), Positives = 102/298 (34%), Gaps = 38/298 (12%)

Query: 151 DTDYSVEDKFERLSIVDGG---YNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRS 206
           + DY     F R+     G         +   + I  GC   C+FC +    G  I +RS
Sbjct: 310 EMDYVFGLPFARVPHPRYGDAKIPAYEMIKTSVNIMRGCFGGCSFCSITEHEGRIIQNRS 369

Query: 207 LSQVVDEARKLIDN--GVCEIT--LLGQNVNAWR----------------------GKGL 240
              +++E + + +   G   +   L G   N +R                       + L
Sbjct: 370 QESIINEIKDIREKVPGFTGVISDLGGPTANMYRLGCSDPRAEKNCRRPSCVFPKICEKL 429

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL--DVLMPYLHLPVQSG 298
           + +     DL     E++G+ ++   +    D++    +   +L    +  YL +  +  
Sbjct: 430 NTDHKHTIDLYREARELEGVKKVVIASGVRYDLAIESPEYVKELVTHHVGGYLKIAPEHT 489

Query: 299 SDRILKSMNRRH--TAYEYRQIIDRI-RSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
               L  M +    T   ++++ ++  +       +   FI   PG TD+D       + 
Sbjct: 490 EKGTLDLMMKPGMGTYDRFKELFEKYSKEAGKKQYLIPYFIAAHPGCTDEDMMNLALWLK 549

Query: 356 KIGY--AQAFSFKYSPRLGTPGSNMLEQVD-ENVKAERLLCLQKKLREQQVSFNDACV 410
           +  +   Q  +F  SP          E    + VK ++   L     E+Q   + A +
Sbjct: 550 ENDFRCDQVQNFYPSPMCNATAMYHAETNPLKRVKYKKREELFVAKGERQRRLHKAFL 607


>gi|152986664|ref|YP_001346499.1| lipoyl synthase [Pseudomonas aeruginosa PA7]
 gi|150961822|gb|ABR83847.1| lipoic acid synthetase [Pseudomonas aeruginosa PA7]
          Length = 323

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 34/214 (15%), Positives = 76/214 (35%), Gaps = 10/214 (4%)

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           + +    E  S  + G     G   F+ + + C + C FC V + R   +   + +  + 
Sbjct: 64  HKLHSVCEEASCPNLGECFSGGTATFMIMGDICTRRCPFCDVGHGRPKPL--DVDEPTNL 121

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
           A  + D  +  + +   +    R    DG    F+D L  + ++   ++L       R  
Sbjct: 122 AIAIADLRLKYVVITSVD----RDDLRDGGAQHFADCLREIRKLSPGIQLETLVPDYRGR 177

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
            D  ++   +     P +         R+ +S            ++ + + + P +   S
Sbjct: 178 MDIALEITANEP---PDVFNHNLETVPRLYRSSRPGSDFEWSLDLLQKFKQMVPHVPTKS 234

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
             ++G  GETD++    M  + +         +Y
Sbjct: 235 GLMLGL-GETDEEVIEVMQRMREHDIDMLTLGQY 267


>gi|162454799|ref|YP_001617166.1| hypothetical protein sce6517 [Sorangium cellulosum 'So ce 56']
 gi|161165381|emb|CAN96686.1| hypothetical protein sce6517 [Sorangium cellulosum 'So ce 56']
          Length = 1017

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 45/280 (16%), Positives = 86/280 (30%), Gaps = 24/280 (8%)

Query: 72  IREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ 131
           +     EK          LK   +    + L  +A   A         R           
Sbjct: 182 VIGDGEEKATEVALAWARLKREGV-PRRERLAAIARLGAVYVPSLYATRL---------- 230

Query: 132 TYYRLPELLERARFGKRVVDTDYSVED--KFERLSIVDGGYNRKRGVTAFLTIQEGCDKF 189
                 E+++R          + ++ D  ++        G          + I  GC + 
Sbjct: 231 DPDTGFEVVDRPLASGIPFPIERALVDLNRYPFPDESPTGGPEAIFDRMSIEIARGCTEG 290

Query: 190 CTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFS 248
           C FC           R   Q+VD   + +   G  E++L   +           +K T  
Sbjct: 291 CRFCQAGMIYRPVRERDPEQIVDTVMRAVQRSGQDEVSLTALSTADVSCISPLIKKVTER 350

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
                +S       L  ++     +   L+     +      L    ++G+ R+   +N+
Sbjct: 351 LTAERIS-------LGVSSLRAYGLEPDLLDELKRVR--ATGLTFAPEAGTQRMRDVVNK 401

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFR 348
             T  +  +  +R+ S      +   F++G P ETD+D R
Sbjct: 402 NVTEEQLLETAERVFSRGWG-KMKLYFMIGLPTETDEDVR 440


>gi|118580989|ref|YP_902239.1| magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase
           [Pelobacter propionicus DSM 2379]
 gi|118503699|gb|ABL00182.1| Magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase
           [Pelobacter propionicus DSM 2379]
          Length = 674

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 53/298 (17%), Positives = 95/298 (31%), Gaps = 39/298 (13%)

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA----- 143
            +     K   ++ +V  G       E  L R P ++ VV  +    L EL+        
Sbjct: 87  QIAQRLKKARPEIRIVAGGHDVTFVAERTLERFPWIDAVVRGEGELSLSELVSAWAVREE 146

Query: 144 ---------RFGKRVV-DTDYSVEDKFERLSIVDGGYNRK----------RGVTAFLTIQ 183
                    R G  V+ + D  +    + L + D G+                 A L + 
Sbjct: 147 GEGIEGISWRRGTEVIRNPDRQLISDLDVLPLPDYGFVPDLETYRDACGIPRAIAILEVG 206

Query: 184 EGCDKFCTFCVVPYT-RGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLD 241
            GC   C +C      R    + S+ ++  E R+L +  G     L      A       
Sbjct: 207 RGCPHACVYCSESIMWRRRTRTFSIPRITHEMRRLRERYGAQCFLLAYDQFTA------- 259

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
            ++    +    + E        Y  S    M   L++   +       +   + SGS R
Sbjct: 260 -DRRFVEEFCRRVLEEGLNDTPWYCISRLDSMDVELLRLMREAG--CESMCYGIDSGSRR 316

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
            L  + ++       Q +         +  +  F++GFP E  +D   T+ L  + G 
Sbjct: 317 TLAFIGKQIDETILYQRVRETTD--EGMVPTLSFVIGFPEEQREDVDQTLFLALRAGI 372


>gi|228989974|ref|ZP_04149949.1| Oxygen-independent coproporphyrinogen III oxidase 2 [Bacillus
           pseudomycoides DSM 12442]
 gi|228769765|gb|EEM18353.1| Oxygen-independent coproporphyrinogen III oxidase 2 [Bacillus
           pseudomycoides DSM 12442]
          Length = 496

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 45/247 (18%), Positives = 86/247 (34%), Gaps = 13/247 (5%)

Query: 129 GPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
           G        ELLE     +  ++    + D   +L++V   Y  K  V+ ++ I   C  
Sbjct: 127 GMSKEEAHKELLESYLIHEEKIELLQRIVD--CQLAVVPDLYRLKEEVSIYIGIPF-CPT 183

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG-------LD 241
            C +C  P         S+   +      +      +   G  V      G        +
Sbjct: 184 KCAYCTFPAYAINGRQGSVDSFLGGLHYEVREIGKFLKEKGVKVTTIYYGGGTPTSITAE 243

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
                + ++  S  ++K +  +      P  ++   ++        +  + +  QS    
Sbjct: 244 EMDMLYEEMYQSFPDVKEVREVTVEAGRPDTITPEKLEVL--NKWNIDRISINPQSYHQE 301

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
            LK++ R HT  E  +     R +  +  I+ D I+G PGE  D F+ T+D  +K+    
Sbjct: 302 TLKAIGRHHTVEETIEKYHLARQMGMN-NINMDLIIGLPGEGLDIFKHTLDETEKLMPES 360

Query: 362 AFSFKYS 368
                 S
Sbjct: 361 LTVHTLS 367


>gi|182626169|ref|ZP_02953928.1| radical SAM domain protein [Clostridium perfringens D str. JGS1721]
 gi|177908525|gb|EDT71053.1| radical SAM domain protein [Clostridium perfringens D str. JGS1721]
          Length = 662

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 65/399 (16%), Positives = 124/399 (31%), Gaps = 54/399 (13%)

Query: 69  TCHIREKAAE--KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNV 126
           TC+I +   E  + +  L   + + +++        +          G  +++      V
Sbjct: 200 TCYIADSLDEIYEEHIVLPSFKEVSSNKRTYAECFKIQYDEQDPVR-GRTLVQEHNGKYV 258

Query: 127 VVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGC 186
           V+         E L+R              +  +  +   DGG      V   L    GC
Sbjct: 259 VINKPEMPLSREELDRVYA--------LPYQKTYHPIYEKDGGIAAIEEVKFSLVSSRGC 310

Query: 187 DKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDNGVCEITLLGQ--------------- 230
              C+FC + + +G  + SRS   +V+EA ++      +  +                  
Sbjct: 311 SGNCSFCAITFHQGRIVTSRSEDSIVEEAEEITKYDDFKGYIHDIGGPTANFRKPACKKQ 370

Query: 231 -NVNAWR---------GKGLDGEKCTFSDLLYSLSEIKGLVR------LRYTTSHPRDMS 274
             + A +          K ++ +   +  LL  + ++ G+ +      LRY         
Sbjct: 371 LTLGACKHKRCMSPGICKNMEVDHREYLHLLRRVRKLPGIKKVFIRSGLRYDYIMADKDD 430

Query: 275 DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH--TAYEYRQIIDRIRSVRPDIA-I 331
               +       +   L +  +  S  +LK M +    T  E+R+   RI         I
Sbjct: 431 TFFKELV--EHHVSGQLKVAPEHVSPNVLKYMGKPAGKTYDEFRRKFFRITERLGKKQFI 488

Query: 332 SSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM-----LEQVDENV 386
               +   PG   +D     + +  I Y       + P  GT  + M          E V
Sbjct: 489 IPYLMSSHPGCKLEDAIMLAEYLRDINYQPEQVQDFYPTPGTLSTTMFYTGLDPLTMEEV 548

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK 425
              R    +   R      N      + + L+ K G+E 
Sbjct: 549 YIPRSKEEKAMQRALLQFKNPKNYNIVYDALV-KAGRED 586


>gi|319761156|ref|YP_004125093.1| lipoic acid synthetase [Alicycliphilus denitrificans BC]
 gi|317115717|gb|ADU98205.1| lipoic acid synthetase [Alicycliphilus denitrificans BC]
          Length = 326

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 79/221 (35%), Gaps = 12/221 (5%)

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
           + +  ++ +    E  S  + G     G   F+ + + C + C FC V + R   +    
Sbjct: 62  KQILREHKLHTVCEEASCPNIGECFGHGTATFMIMGDKCTRRCPFCDVGHGRPDPL--DK 119

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
            + ++ A+ +    +  + +   +    R    DG    F + +  + E+    ++   T
Sbjct: 120 EEPLNLAKTIAALRLKYVVITSVD----RDDLRDGGSGHFVECIQRIRELSPATQIEILT 175

Query: 268 SHPRDMSDCLIKAH-GDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
              R   D  ++        +M +    V     R+ K             ++ + +++ 
Sbjct: 176 PDFRGRDDRALEILKAAPPDVMNHNLETV----PRLYKEARPGSDYQFSLNLLKKFKALH 231

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           P +   S  +VG  GETD++    M  +   G       +Y
Sbjct: 232 PGVPTKSGLMVGL-GETDEEILQVMRDMRAHGIDMLTIGQY 271


>gi|262382066|ref|ZP_06075204.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|262297243|gb|EEY85173.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
          Length = 616

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 51/326 (15%), Positives = 105/326 (32%), Gaps = 60/326 (18%)

Query: 111 QAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGY 170
           +   ++ L+++     +      Y    +L++      VV+  +    + E  +  D  Y
Sbjct: 224 EECLKDKLKQAKNFRHIEEESNKYNASRILQKVGKQVIVVNPPFPPMTEAEIDASYDLPY 283

Query: 171 NRKRGVTA-------------FLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEAR- 215
            R                    + I  GC   C FC +   +G  I SRS   ++ E + 
Sbjct: 284 TRLPHPKYKGKVIPAFEMIKFSVNIHRGCFGGCAFCTISAHQGKFIASRSKESILKEVKA 343

Query: 216 --KLIDNGVCEITLLGQNVNAWRGKGLDGEKCT----------------------FSDLL 251
             ++ D       L G + N +R KG D   C                         D+ 
Sbjct: 344 ITEMPDFKGYLSDLGGPSANMYRMKGKDERICAKCKKPSCISPVVCKNLNADHTPLLDIY 403

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL---------------DVLMPYLHLPVQ 296
            ++  +  + +    +    D+   L+  + D                  +   L +  +
Sbjct: 404 KAVDRLPEIKKSFIGSGVRYDL---LLHRYADESLNKAAQTYTEELIARHVSGRLKVAPE 460

Query: 297 SGSDRILKSMNRRHTAYE--YRQIIDRI-RSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
              D +LK M +   +    +++I D++ R    +  +   FI   PG T+ D      +
Sbjct: 461 HTQDEVLKQMRKPSFSQFGQFKKIFDKVNRQYGLNQQLIPYFISSHPGCTEADMAELAVI 520

Query: 354 VDKIGYAQAFSFKYSPRLGTPGSNML 379
              + +       ++P   T  + M 
Sbjct: 521 TKSLHFQLEQVQDFTPTPMTLATEMY 546


>gi|322421523|ref|YP_004200746.1| Radical SAM domain-containing protein [Geobacter sp. M18]
 gi|320127910|gb|ADW15470.1| Radical SAM domain protein [Geobacter sp. M18]
          Length = 454

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 35/198 (17%), Positives = 80/198 (40%), Gaps = 16/198 (8%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARK-LIDNGVCEITLLGQNVNAWRG 237
           +  + GC   C++C  P   G     R   +VVD+  +   ++GV E  +     N   G
Sbjct: 183 VQTKRGCPHGCSYCSYPALEGKSYRCRDPRRVVDDMERAKAEHGVEEFFITDSVFNDCDG 242

Query: 238 KGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQS 297
           + L+       ++L    EI+    LR      R+++  +       +  +  + +   +
Sbjct: 243 QYLE----VVREILRRRLEIRWSCYLRPEGVGRRELALMM-------EAGLHAVEVGTDA 291

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
             D  L ++ +  T  +  ++     + R  ++ +   + G P ET +  +  ++ ++ +
Sbjct: 292 ADDTTLAALGKGFTFADVLELNRACVAER--LSCAHFVMFGGPDETMESVQRGLENLETL 349

Query: 358 GYAQAFSFKYSP-RLGTP 374
            ++  F+F       GTP
Sbjct: 350 EHSVVFAFSGIRVLPGTP 367


>gi|283851740|ref|ZP_06369018.1| Radical SAM domain protein [Desulfovibrio sp. FW1012B]
 gi|283572860|gb|EFC20842.1| Radical SAM domain protein [Desulfovibrio sp. FW1012B]
          Length = 454

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 72/348 (20%), Positives = 116/348 (33%), Gaps = 40/348 (11%)

Query: 43  RMEDMFFSQGY-ERVNSMD-----DADLIVLNT----C---HIRE----KAAEKVYSFLG 85
            +       GY   V+ +      DA + VL      C    +R      +     S+ G
Sbjct: 25  VVAGALRQAGYPTLVHDLALEASPDALVRVLEAFDPDCIGISVRNVDNVDSLSAEASWTG 84

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                  +R+K  G   +++ G       E +L  S     V GP     LP LL+R   
Sbjct: 85  DALRDLVARLKTCGKAPIILGGPGFSLMPEALLEHSGADYGVTGPGEV-ALPALLDRLSI 143

Query: 146 GK---RVVDTDYSVEDKFERLSIVDG--GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           GK   R+V    S        +  D       KRG    L  + GC   C +C  P   G
Sbjct: 144 GKASPRIVAAPGSSRRVIGPAAWDDSVLPEYLKRGGVPGLHTKRGCPNACLYCGYPLVEG 203

Query: 201 I-EISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258
                R   +VV++ R   D  G  E        N       +G     +++L   + + 
Sbjct: 204 TIVRHRDPLEVVEDLRLARDRFGAREFFFTDAVFN-----DPEGGHLHLAEVLVR-ANLG 257

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
                 +      D    L+K  G +      +      G DR L+ +N+ H+  +    
Sbjct: 258 VRFGAYFQPRRTTDAEWTLLKRAGLM-----AVEAGTDGGCDRTLEGLNKPHSMDDVFTF 312

Query: 319 IDRIRSVR-PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
            +   + R P        I G P ET +     +  +D++     F+F
Sbjct: 313 QEMCHAHRVPCAHF---VIFGGPDETMETLEEGLANLDRLQGGCVFAF 357


>gi|149204321|ref|ZP_01881288.1| Radical SAM [Roseovarius sp. TM1035]
 gi|149142206|gb|EDM30253.1| Radical SAM [Roseovarius sp. TM1035]
          Length = 509

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 52/293 (17%), Positives = 102/293 (34%), Gaps = 28/293 (9%)

Query: 72  IREKAA----EKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVV 127
               A         S   R   +     K G    VV+ G       E  +  +    +V
Sbjct: 62  FTNPAQIVCISMNVSQARRGIEIAQEFKKMGRT--VVMGGAHVSLAPE--VFEADADCLV 117

Query: 128 VGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCD 187
           +G        E +   R G           D           Y  +R VT  +    GC 
Sbjct: 118 IGEFETSA-EEFMRDLRNGALKPRYVGGKADMALSPLPRWDLYRNERVVTGVIQTSRGCP 176

Query: 188 KFCTFC-VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT 246
             C FC V+ Y    +  +   +V++E + L D+G   I+L   N   +R +        
Sbjct: 177 FECHFCDVIQYLGRTQRHKPPEKVIEECQLLYDHGYRNISLSDDNFTVYRKRT------- 229

Query: 247 FSDLLYSLSEI---KGLVRLRYTTSHPRDMSDC--LIKAHGDLDVLMPYLHLPVQSGSDR 301
             +LL  L+      G   ++++T    D++    ++      +  +  + + +++ SD 
Sbjct: 230 -RELLEVLAAWNGRDGREPVQFSTQASIDIARDQGIMDLC--NEAGVRDIFIGIETNSDE 286

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRP-DIAISSDFIVGFPGETDDDFRATMDL 353
            L+   +R    +   ++ + ++V    I +SS  ++GF  +    F    + 
Sbjct: 287 ALQESKKRQNLKQ--DLVKQTQTVVESGIVVSSGMMIGFDSDDLSCFERQFEF 337


>gi|148243281|ref|YP_001228438.1| Fe-S oxidoreductase [Synechococcus sp. RCC307]
 gi|147851591|emb|CAK29085.1| Fe-S oxidoreductase [Synechococcus sp. RCC307]
          Length = 530

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 47/298 (15%), Positives = 87/298 (29%), Gaps = 33/298 (11%)

Query: 79  KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVV-VGPQTYYRLP 137
           +++  L  IR               V+ G       E++    P   VV VG        
Sbjct: 126 ELWRNLRLIRRGLKRARHHCPQAQAVLGGGATSVFYEQLAPLLPKGTVVSVGEGEPLLEK 185

Query: 138 ELLERARFGKRVVDTDYSVE------------------DKFERLSIVDGGYNRKRGVTAF 179
            L   +  G+R      +                    D  E +      Y         
Sbjct: 186 LLRGESLAGERCFRAGEAPRPGLIHEQPSGLIKTACDYDYIESIWPQLNWYLEAGDFYVG 245

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISR-SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK 238
           +  + GC   C +CV     G  +    + +V+ E R+L + GV             R  
Sbjct: 246 VQTKRGCPHNCCYCVYTVVEGKAVRVNPVDEVIAEMRQLYERGVRGFWFTDAQFIPARRY 305

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRY-TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQS 297
             D +     +LL ++ + +G   +R+       ++   L +        M Y  + + S
Sbjct: 306 IEDAK-----ELLRAVQQ-QGWNDIRWAAYIRADNLDAELAELMVATG--MEYFEIGITS 357

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPG--ETDDDFRATMDL 353
           GS  +++ M   +      +    +   R            F    E  +  R T+  
Sbjct: 358 GSQELVRKMRMGYNLRTVLENCSLL--ARAGFRHHVSVNYSFNVIDERPETIRQTVAY 413


>gi|312127212|ref|YP_003992086.1| Radical SAM domain-containing protein [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311777231|gb|ADQ06717.1| Radical SAM domain protein [Caldicellulosiruptor hydrothermalis
           108]
          Length = 535

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 44/289 (15%), Positives = 98/289 (33%), Gaps = 20/289 (6%)

Query: 76  AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135
           A          +  L     K    + +++ G        + L     V+ ++  +  Y 
Sbjct: 58  AISTYIWNRSYVEKLVEGLKKAQKSIKIILGGP---EVYFDSLEEWKFVDSIIRGEGEYP 114

Query: 136 LPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
             +L E    G++    +Y   D   +L               +     GC   C++C+ 
Sbjct: 115 FLDLCEHIAAGRQYTQKEYPPFD-LSKLPFAYKDEKLDTSRIYYYESSRGCPFRCSYCLS 173

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
              +G      L +V +E   L    V  I  + +  NA + + +      F       +
Sbjct: 174 SIEKG-VRFAPLEKVFEELDYLFKKQVRLIKFVDRTFNANKERAI--RIIEFCKQKSQAT 230

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
           ++       +    P  + + +I A  +    +  L + +QS + + L +++R       
Sbjct: 231 QV-------HFEIDPTLLDNDIISAINNSKDDLFRLEIGLQSFNPQTLDAIDRFFDIDRI 283

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD-----LVDKIGY 359
            + + ++   +  I +  D I G P E    F+ ++D       D++  
Sbjct: 284 DKNLKKLMENKKAI-VHLDLIAGLPYEDFLSFKRSLDKTILYFADEVQL 331


>gi|226327582|ref|ZP_03803100.1| hypothetical protein PROPEN_01453 [Proteus penneri ATCC 35198]
 gi|225204108|gb|EEG86462.1| hypothetical protein PROPEN_01453 [Proteus penneri ATCC 35198]
          Length = 458

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 48/254 (18%), Positives = 95/254 (37%), Gaps = 31/254 (12%)

Query: 173 KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS-------QVVDEARKLIDNGVCEI 225
           +R ++ ++ I   C K C FC           ++         ++++ AR   D  V ++
Sbjct: 50  ERPLSLYIHIPF-CHKLCYFCGCNKIITRHKHKADEYLDVLEKEIINRARYFKDRKVTQM 108

Query: 226 TLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLD 285
              G            G   TF D    +S +  L+R  +      ++S  +     +LD
Sbjct: 109 HWGG------------GGTPTFLD-KQQISRLVSLLRQHFDFVDNAELSIEIDPREIELD 155

Query: 286 VL-------MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVG 338
           V+          L + VQ  +  + + +NR         +++R R V    + S D I G
Sbjct: 156 VIDHLRNEGFNRLSMGVQDFNKEVQQKVNREQDEAFIFALVERAREVGFH-STSIDLIYG 214

Query: 339 FPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKK 397
            P +T + F  T+  V ++   +   F Y+       +   ++  D  +  E+L  LQ+ 
Sbjct: 215 LPKQTKESFAFTLKRVIELSPDRLSVFNYAHLPNLFAAQRKIKDEDLPLAEEKLEILQET 274

Query: 398 LREQQVSFNDACVG 411
           +     +     +G
Sbjct: 275 ISTLTTNGYQ-FIG 287


>gi|168703299|ref|ZP_02735576.1| Radical SAM domain protein [Gemmata obscuriglobus UQM 2246]
          Length = 616

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 37/196 (18%), Positives = 72/196 (36%), Gaps = 15/196 (7%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
           L    GC   C FC  P +   +   S   V          G  E+ LL   +N      
Sbjct: 203 LETTRGCVFNCKFCYYPKSYDKQYYLSTDLVSASLAHARTRGAEEVFLLDPTLN------ 256

Query: 240 LDGEKCTFSDLLYSLSE-IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
              ++  F++ +  L+    G     +       ++  +     +       + + +QS 
Sbjct: 257 ---QRKDFAEFVRLLARGNPGRKFKYFGELRAEGITPEIASLLAEAG--FTEVEVGLQSV 311

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
               +  M RR+    + + +  +  +   I+++ D IVG PG+T++  R     +   G
Sbjct: 312 ERDAMDLMARRNNLKAFEKGVRAL--IDAGISVTVDLIVGLPGDTEESVRRGFRYLRDGG 369

Query: 359 -YAQAFSFKYSPRLGT 373
            Y++A  F  +   GT
Sbjct: 370 LYSRAQVFNLAVLPGT 385


>gi|15643105|ref|NP_228148.1| hypothetical protein TM0337 [Thermotoga maritima MSB8]
 gi|4980838|gb|AAD35424.1|AE001714_15 conserved hypothetical protein [Thermotoga maritima MSB8]
          Length = 558

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 62/310 (20%), Positives = 101/310 (32%), Gaps = 58/310 (18%)

Query: 159 KFERLSIVDGGYNRKRGVTAFLTIQ----EGCDKFCTFCVVPYTRGIEIS-RSLSQVVDE 213
            FER          K      +        GC   C+FC +   +   +S RS   +++E
Sbjct: 263 PFEREVHPFYAKMGKVKAIETVKFSITAVRGCFGNCSFCALTQHQTTHVSYRSKDSILEE 322

Query: 214 ARKLIDNGVCEITLL--GQNVNAWRGKGLDGEKCT----------------------FSD 249
            R L      + T+   G       G G    +                        F  
Sbjct: 323 VRILTKKKDFKGTITDVGGPTANLYGSGCSIRETKGQCQKFCLYPIVCKVVRPNHDEFIS 382

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDM---SDCLIKAHGDLDVLMP-YLHLPVQSGSDRILKS 305
           LL S+ +I G+  +  ++    D             +L    P  L L  +    ++L  
Sbjct: 383 LLESIRQIPGVRNVFVSSGIRHDFVFAEKDPDVFIRELVKYTPGQLKLAPEHAHPKVLSL 442

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAIS----SDFIVGFPGETDDDFRATMDLV-DKIGYA 360
           M +      + +   R  ++   +         FIVG PGE   +     D +   +GY 
Sbjct: 443 MRKP-PVELFLEFKKRFETLAKKMGKRKYVIGYFIVGHPGEGWRENNYLRDFILKHLGYF 501

Query: 361 QAFSFKYSPRLGTPGSNMLEQ-VD----ENVKAERLLCLQKKLREQQVSFNDACVGQIIE 415
                 ++P  GT  + M    VD    E V  ER L ++ K++E               
Sbjct: 502 PQQIQIFTPTPGTVSTAMYYSGVDPFTGEKVHVERSLKVRNKMKEN-------------- 547

Query: 416 VLIEKHGKEK 425
           VL +K G+EK
Sbjct: 548 VLFKKKGREK 557


>gi|315922434|ref|ZP_07918674.1| coproporphyrinogen III oxidase [Bacteroides sp. D2]
 gi|313696309|gb|EFS33144.1| coproporphyrinogen III oxidase [Bacteroides sp. D2]
          Length = 335

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 40/200 (20%), Positives = 73/200 (36%), Gaps = 21/200 (10%)

Query: 222 VCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMS------- 274
           + +  L G+++         G             +I   +R  Y  SH ++++       
Sbjct: 1   MRKDYLKGEDIETVYF----GGGTPSQLEKEDFEQIFDTIRTHYGLSHCQEITLEANPDD 56

Query: 275 --DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAIS 332
                +K    L      + + +Q+  D  LK + RRH A+   + + R R       IS
Sbjct: 57  LTSEYLKMLSSLP--FNRISMGIQTFDDPTLKLLKRRHNAHTAIEAVHRCREAGFQ-NIS 113

Query: 333 SDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ-----VDENVK 387
            D I G PGET + +   +     +      ++       TP  NML+Q     VDE+  
Sbjct: 114 IDLIYGLPGETKERWENDLRQAVSLNVEHISAYHLIYEEDTPIYNMLKQHQISEVDEDSS 173

Query: 388 AERLLCLQKKLREQQVSFND 407
            +    L + L++      +
Sbjct: 174 LDFFTLLIEHLQKAGFEHYE 193


>gi|260438638|ref|ZP_05792454.1| radical SAM domain protein [Butyrivibrio crossotus DSM 2876]
 gi|292809232|gb|EFF68437.1| radical SAM domain protein [Butyrivibrio crossotus DSM 2876]
          Length = 569

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 45/300 (15%), Positives = 97/300 (32%), Gaps = 32/300 (10%)

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +  ++ L     K    + + + G       EE   R   V  V+  +      EL++  
Sbjct: 68  INYVKELLPELNKLLPGVKIWLGGPEVSYNTEEYAGRYENVAGVIKGEGEAVFKELMDCY 127

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGY---------------------NRKRGVTAFLTI 182
             G+                 I+D                        + K  +  + + 
Sbjct: 128 MEGREKDIPSIPGITTVSDGKIIDNPCTLVYDMSDSVMPYYAAGYKEDDYKNKIIYYES- 186

Query: 183 QEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG 242
             GC   C++C+          R+   V+ + +  +DN V  +  + +  N         
Sbjct: 187 SRGCPFSCSYCL-SSVDKHLRFRNTELVLTDLKVFLDNKVALVKFVDRTFNC-------- 237

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
            +     +L  + +    +   +       + +  I+    L   +  L + VQS +   
Sbjct: 238 NREHSRKILRFIRDNDNGITSFHFEIAADILEEEDIRIMNSLRPGLIQLEIGVQSTNQDT 297

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           +K+++R     + R  +  IR  R +I +  D I G P E  + FR + + +  +     
Sbjct: 298 IKAIHRVMNLDKLRNNVAAIRKCR-NIHMHLDLIAGLPYEDINSFRKSFNDIYDMKPDNL 356


>gi|119719392|ref|YP_919887.1| radical SAM domain-containing protein [Thermofilum pendens Hrk 5]
 gi|119524512|gb|ABL77884.1| Radical SAM domain protein [Thermofilum pendens Hrk 5]
          Length = 567

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 54/259 (20%), Positives = 101/259 (38%), Gaps = 34/259 (13%)

Query: 149 VVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDK----FCTFCVVPYTRGIE 202
            V  DYS+ D+F      IV    N    +TA +   + C +     C+FC+ P   G  
Sbjct: 160 AVSKDYSLVDRFAVRGARIVLQHPNLGYNLTAEIETYKSCPRWVTGGCSFCIEPRL-GRV 218

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQ-NVNAWRGKGLD------GEKCTFSDLLYSLS 255
           + R    + +E R L + GV    L  Q +  A++ KG++       +  +  +L+ ++ 
Sbjct: 219 VFREAKSIGEEVRALYELGVRAFRLGRQADFLAYKAKGVNEVEFPEPDPSSIEELMRTVR 278

Query: 256 -EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY------LHLPVQSGSDRILKSMNR 308
                   +     +P  +     KA   L  ++ Y          ++S    ++K  N 
Sbjct: 279 LAAPSAETIHIDNVNPATIYIHKEKAREALKSIVKYHTPGDVAAFGLESADPVVVKQNNL 338

Query: 309 RHTAYEYRQIIDRIRSV--------RPDIAISSDFIVGFPGETDDDFRATMDLVDKI--- 357
            + A    + I  +  V         P++    +F++G PGET   +RA  + +++I   
Sbjct: 339 GNDAEGVLEAIKIVNEVGARRGWNGSPELLPGVNFVLGLPGETAKTYRANKEFLERILEE 398

Query: 358 --GYAQAFSFKYSPRLGTP 374
                +    +  P  GTP
Sbjct: 399 GLLVRRVNVREVLPLPGTP 417


>gi|294665856|ref|ZP_06731124.1| Mg-protoporphyrin IX monomethyl ester oxidative cyclase
           [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
 gi|292604366|gb|EFF47749.1| Mg-protoporphyrin IX monomethyl ester oxidative cyclase
           [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
          Length = 496

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 44/251 (17%), Positives = 76/251 (30%), Gaps = 22/251 (8%)

Query: 142 RARFGKRVVDTDYS---VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
           R   G +  D   S     D  +          R    +  +    GC   C +C  P  
Sbjct: 171 RVHPGAQPPDARLSGLPAWDLVDMPRYRRFWQQRHGHFSLNMAASRGCPFRCNWCAKPIW 230

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258
                 R   ++  E   L  +   +   +  ++  +    ++            LS+  
Sbjct: 231 GNHYKRRGAEEMAAEMIHLKRSYRPDHIWMADDIFGFHIDWVET-------FAQQLSDAD 283

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           G   + +T     D++     A            +  +SGS RIL  M +     E    
Sbjct: 284 GA--IPFTIQTRADLASE-RMAAALARAGCVEAWIGAESGSQRILDKMTKGTRVGEVIAA 340

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
            +R+ +    I +     +G+ GE  +D  AT  LV +            P  GT     
Sbjct: 341 RERLGTQ--GIRVGFFIQLGYLGEELEDILATRALVTQANPDIIGVSVSYPLPGTKFY-- 396

Query: 379 LEQVDENVKAE 389
                E VK +
Sbjct: 397 -----EEVKNQ 402


>gi|53802416|ref|YP_112827.1| hypothetical protein MCA0293 [Methylococcus capsulatus str. Bath]
 gi|53756177|gb|AAU90468.1| conserved hypothetical protein [Methylococcus capsulatus str. Bath]
          Length = 710

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 54/300 (18%), Positives = 96/300 (32%), Gaps = 41/300 (13%)

Query: 112 AEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYN 171
                +++R   ++V + P      P L    R   RV    YS   +    S  D    
Sbjct: 310 HNARALVQRHGAIDVWLNP------PALPLTTREMDRVYGLPYS---RLPHRSYGDARIP 360

Query: 172 RKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDNGVCEITLL-- 228
               +   +TI  GC   CTFC +    G  I SRS   ++ E   + D       ++  
Sbjct: 361 AFEMIQHSVTIMRGCFGGCTFCSITEHEGRIIQSRSEESILREIEVIRDTSPAFTGVISD 420

Query: 229 --GQNVNAWR----------------------GKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
             G   N +R                       K L  +      L     ++ G+ ++ 
Sbjct: 421 LGGPTANMYRLACKSRAIEASCRRPSCVYPGICKNLGTDHGPLIRLYRRARQLPGIKKIL 480

Query: 265 YTTSHPRDMSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRR--HTAYEYRQIID 320
             +    D++    +   +L    +  YL +  +      L  M +    T   ++ + D
Sbjct: 481 IGSGLRYDLAVRSPEYVKELVTHHVGGYLKIAPEHTEPGPLSKMMKPGIGTYDRFKAMFD 540

Query: 321 RI-RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
           +  R    +  +   FI   PG TD+D       + K G+       + P      + M 
Sbjct: 541 QYSREAGKEQYLIPYFIAAHPGTTDEDMLNLALWLKKNGFRADQVQAFLPSPMAVATAMY 600


>gi|294675687|ref|YP_003576302.1| radical SAM family protein [Rhodobacter capsulatus SB 1003]
 gi|294474507|gb|ADE83895.1| radical SAM family protein [Rhodobacter capsulatus SB 1003]
          Length = 687

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 44/228 (19%), Positives = 79/228 (34%), Gaps = 34/228 (14%)

Query: 176 VTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDNGVCEITLL----GQ 230
           +   +T+  GC   CTFC +    G  I SRS + ++ E   + D       ++    G 
Sbjct: 336 IKTSVTVMRGCFGGCTFCSITEHEGRVIQSRSEASILREIEAIRDKTPGFAGVISDIGGP 395

Query: 231 NVNAWR----------------------GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
             N +R                         LD        L   + E+KG+ ++   + 
Sbjct: 396 TANMYRMACKDPKVQAACRLPSCVFPDICPNLDTSHDDLIRLYRKVREVKGIKKVMVASG 455

Query: 269 HPRDMSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRRH--TAYEYRQIIDRI-R 323
              D++    +   +L    +  YL +  +      L+ M +    T   ++++ D   +
Sbjct: 456 VRYDLAVKSPEYIKELVTHHVGGYLKIAPEHTERGPLELMMKPGIGTYDRFKEMFDAAAK 515

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY--AQAFSFKYSP 369
                  +   FI   PG TD+D       + K  Y   Q  +F  SP
Sbjct: 516 QAGKKYFLIPYFIAAHPGTTDEDMLNLALWLKKNRYRADQVQTFLPSP 563


>gi|253579606|ref|ZP_04856875.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251849107|gb|EES77068.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 558

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 38/211 (18%), Positives = 77/211 (36%), Gaps = 10/211 (4%)

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           R G +++   +        +  +    +  +    +     GC   C++C+         
Sbjct: 144 RDGDQIIHNGWRQIMDLSSIPFIYKDLSEFKNRIIYYESSRGCPFSCSYCL-SSIDKKLR 202

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
            R    V  E +  IDN V ++  + +  N      +   K         ++E    V  
Sbjct: 203 FRDTETVKKELQFFIDNKVPQVKFVDRTFNCKHDHAMAIWKY--------INEHDNGVTN 254

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
            +       + +  ++    +   +  L + VQS +   +K+++R     + + I+DRI 
Sbjct: 255 FHFEISADLLREEELQEMSTMRPGLIQLEIGVQSTNPDTIKAIHRTMDFEKLKGIVDRIH 314

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           S   +I    D I G P E  D FR + + V
Sbjct: 315 S-FGNIHQHLDLIAGLPYEDYDSFRNSFNDV 344


>gi|229101628|ref|ZP_04232350.1| Oxygen-independent coproporphyrinogen III oxidase 2 [Bacillus
           cereus Rock3-28]
 gi|229114455|ref|ZP_04243872.1| Oxygen-independent coproporphyrinogen III oxidase 2 [Bacillus
           cereus Rock1-3]
 gi|229171646|ref|ZP_04299221.1| Oxygen-independent coproporphyrinogen III oxidase 2 [Bacillus
           cereus MM3]
 gi|228611792|gb|EEK69039.1| Oxygen-independent coproporphyrinogen III oxidase 2 [Bacillus
           cereus MM3]
 gi|228668997|gb|EEL24422.1| Oxygen-independent coproporphyrinogen III oxidase 2 [Bacillus
           cereus Rock1-3]
 gi|228681789|gb|EEL35944.1| Oxygen-independent coproporphyrinogen III oxidase 2 [Bacillus
           cereus Rock3-28]
          Length = 496

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 56/306 (18%), Positives = 94/306 (30%), Gaps = 18/306 (5%)

Query: 77  AEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG-EEILRRSPIVN--------VV 127
            E     L    + K    +    +  V    + Q  G E+       V         + 
Sbjct: 66  EETFAKDLSAFTDEKERMKQVKHVVSYVYLSVLQQLTGLEQSWGILTGVRPTKLLHKMLQ 125

Query: 128 VGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCD 187
            G        EL E     +  ++    + D   +L++V   Y  K  V+ ++ I   C 
Sbjct: 126 SGMSKEEAHQELRESYLIHEEKIELLQRIVD--CQLAVVPDLYRLKEEVSIYIGIPF-CP 182

Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT- 246
             C +C  P         S+   +      +      +   G  V      G      T 
Sbjct: 183 TKCAYCTFPAYAINGRQGSVDSFLGGLHYEVREIGKFLKEKGVTVTTIYYGGGTPTSITA 242

Query: 247 --FSDLLYSLSEIKGLVR--LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
                L   + E    V+     T    R  +    K        +  + +  QS     
Sbjct: 243 EEMDMLYEEMYEAFPDVKNVREVTVEAGRPDTITPAKLEVLNKWNIDRISINPQSYHQET 302

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           LK++ R HT  E  +     R +  +  I+ D I+G PGE  D F+ T+D  +K+     
Sbjct: 303 LKAIGRHHTVEETIEKYHLAREMGMN-NINMDLIIGLPGEGLDIFKHTLDETEKLMPESL 361

Query: 363 FSFKYS 368
                S
Sbjct: 362 TVHTLS 367


>gi|21227389|ref|NP_633311.1| hypothetical protein MM_1287 [Methanosarcina mazei Go1]
 gi|47606300|sp|Q8PXD4|Y1287_METMA RecName: Full=UPF0313 protein MM_1287
 gi|20905751|gb|AAM30983.1| Fe-S oxidoreductase [Methanosarcina mazei Go1]
          Length = 626

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 51/262 (19%), Positives = 85/262 (32%), Gaps = 33/262 (12%)

Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSLS 208
           +D  Y +    E              V   LT   GC   C+FC +   +G  I SRS+ 
Sbjct: 298 LDHVYELPYTGETHPSYTEPVPALEMVKFSLTTHRGCFGGCSFCAITQHQGRMIASRSIE 357

Query: 209 QVVDEARKLIDN----------GVCEITLLGQNVNAWRGKG---------------LDGE 243
            ++ EA+KL             G     + G    +W  KG               LD  
Sbjct: 358 SILREAKKLTQKPDFKGIINGVGGPTANMYGMECRSWEKKGACLDKACLYPRVCPALDTS 417

Query: 244 KCTFSDLLYSLSEIKGLVRLR--YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
                +L++ L E+ G+  +   Y   +   + D           +   L +  +  S R
Sbjct: 418 HKKLLELMHRLRELPGVRHVFTGYGVRYDLALEDEEYLEELCAHHISGQLRIAPEHFSGR 477

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIA----ISSDFIVGFPGETDDDFRATMDLVDKI 357
           +  +M++      Y +  DR  +          I +  + G PG T  D     + V   
Sbjct: 478 VTDAMSKPG-KEVYEKFADRFNAFNKKCGKEQYIVNYLMSGHPGCTLKDMIEMAEYVRDH 536

Query: 358 GYAQAFSFKYSPRLGTPGSNML 379
           G        ++P   T  + M 
Sbjct: 537 GGYTEQVQDFTPTPMTVSTCMY 558


>gi|329961309|ref|ZP_08299455.1| radical SAM domain protein [Bacteroides fluxus YIT 12057]
 gi|328531915|gb|EGF58735.1| radical SAM domain protein [Bacteroides fluxus YIT 12057]
          Length = 592

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 61/357 (17%), Positives = 116/357 (32%), Gaps = 47/357 (13%)

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL----- 140
           ++ ++     K      +++ G       EE LR++  +N V   +     P+ L     
Sbjct: 107 QLLHITARLKKLLPKSCIILGGPEFLGNNEEFLRKNNFINCVFRGEGEEAFPQWLSCWNQ 166

Query: 141 -ERAR---------FGKRVVDTDYSVEDKFERLSIVD-GGYNRKRGVTAFLTIQEGCDKF 189
            E+ +           K+ +D   +    F  L   +   +         L    GC   
Sbjct: 167 PEQWQSIPGLCYLSQEKQYIDNGIARVLNFSNLVPPEKSPFFNWDKPFVQLETTRGCFNT 226

Query: 190 CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSD 249
           C FC V        + S+  + +  + +  +G+  + +L +  N               +
Sbjct: 227 CAFC-VSGGEKPVRTLSIETIRERLKIIHQHGIKNVRVLDRTFNY--------NPRRAKE 277

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
           LL    E    +R      HP  +S  L +    L   + +L   +QS  + +L++  R 
Sbjct: 278 LLQLFLEFSPDIRFHLE-IHPALLSRELTEELQHLPAGLLHLEAGIQSLREPVLRTSKRM 336

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFP----GETDDDFRATMDL------VDKIGY 359
               +  + +  + S+ P++   +D I G P     E  +D R   +       ++ +  
Sbjct: 337 GKLNDALEGLKFLCSL-PNMETHADLIAGLPLYTLTEIFEDVRTLAEYDAGEIQLESLKL 395

Query: 360 ---------AQAFSFKYSPRLGTPGSNMLE-QVDENVKAERLLCLQKKLREQQVSFN 406
                    A+     YSP          E  V E   A RL  L           N
Sbjct: 396 LPGTEMRRNAEELGIIYSPFPPYEVLQTHEISVSELQTARRLSRLLDGFYNTSAWKN 452


>gi|312135001|ref|YP_004002339.1| Radical SAM domain-containing protein [Caldicellulosiruptor
           owensensis OL]
 gi|311775052|gb|ADQ04539.1| Radical SAM domain protein [Caldicellulosiruptor owensensis OL]
          Length = 341

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 44/235 (18%), Positives = 85/235 (36%), Gaps = 16/235 (6%)

Query: 173 KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV-VDEARKLIDNGVCEITLLGQN 231
           K+ +      Q  C   C FC         IS    +V +D  ++ I+ G+   +     
Sbjct: 2   KQRILPIFIPQYACPFNCIFC-----NQKTISGEKEEVSLDRIKRQIEQGLKINSDEDVE 56

Query: 232 VNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL 291
           + A+ G        TF + L  L+     ++    ++ P  + D  ++     +  +  +
Sbjct: 57  L-AYYGGNFTAIDMTFQERLLELANSFERIKSIRISTRPDCIDDERLRLLKLYN--VRTI 113

Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351
            L +QS  D +L +  R HTA   +  ++ I+       +    +VG P  T +    T 
Sbjct: 114 ELGIQSMFDDVLNACARGHTAQHSKNAMEMIKKF--GFLLGVQVMVGLPKSTPEKDIETA 171

Query: 352 DLVDKIGYAQAFSFKYSPRLGTPGSNM-----LEQVDENVKAERLLCLQKKLREQ 401
            ++       A  +      GT  + M      E +  N   ER   ++    E+
Sbjct: 172 KILTSFSPDIARIYPTLVIEGTYLAKMYQRGEYEPLSLNEAVERCSQIKSIFIEK 226


>gi|119489628|ref|ZP_01622388.1| hypothetical protein L8106_08466 [Lyngbya sp. PCC 8106]
 gi|119454540|gb|EAW35688.1| hypothetical protein L8106_08466 [Lyngbya sp. PCC 8106]
          Length = 526

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 29/202 (14%), Positives = 67/202 (33%), Gaps = 8/202 (3%)

Query: 158 DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR-SLSQVVDEARK 216
           +  E +      Y + +     +  + GC   C +C+     G ++      +VV E ++
Sbjct: 217 NYIESIWPEFEYYFQDQDFYIGVQTKRGCPHNCCYCIYTVIEGKQVRINPADEVVAEIKQ 276

Query: 217 LIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDC 276
           L D G+             R    D       +LL  + +               +++  
Sbjct: 277 LYDRGIRNFWFTDAQFIPARRFISDA-----VELLQKILDAGMDDIHWAAYIRADNLNPE 331

Query: 277 LIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFI 336
           L          M Y  + + SGS  +++ M   +      +    +++   +  +S ++ 
Sbjct: 332 LCDLMVKTG--MNYFEIGITSGSQELVRKMRMGYNLRVVLENCRDLKAAGFNDLVSVNYS 389

Query: 337 VGFPGETDDDFRATMDLVDKIG 358
                ET +  R T+    ++ 
Sbjct: 390 FNVIDETFETIRQTLAYHRELE 411


>gi|20094818|ref|NP_614665.1| Fe-S oxidoreductase [Methanopyrus kandleri AV19]
 gi|19888033|gb|AAM02595.1| Fe-S oxidoreductase [Methanopyrus kandleri AV19]
          Length = 514

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 43/295 (14%), Positives = 97/295 (32%), Gaps = 47/295 (15%)

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
            L+     E   L++V   C    +  E     P V+V    +    L E +E     + 
Sbjct: 106 PLRREDRDENDPLVLVGGPCTVNPKPLE-----PYVDVFYVGEAEAGLEEGIEAILTARD 160

Query: 149 VVDTDYSVED------------------------KFERLSIVDGGYNRKRGVTAFLTIQE 184
             D    + D                        +  +++               + +  
Sbjct: 161 RRDALEELADLPGFYVPEYPGTVDRVTVNNLGGTEPPKIAFAPEDTEHTGLRAYPVELGR 220

Query: 185 GCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK 244
           GC   C FC+  +T G    R + Q+++    +  +      ++  +             
Sbjct: 221 GCPYRCAFCLGGFTAGHMRHRPVEQLLEVLEDVEKSPYDRAAMISPS------------P 268

Query: 245 CTFSDLLYSLSE-IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
               +    L E ++  + +   ++   D+   L+    +    +  L L  +SGS+ +L
Sbjct: 269 TLHPEFEEILEECLERHLEVSLPSTRINDLDPELLPELREAG--VRTLTLAPESGSEDVL 326

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPG-ETDDDFRATMDLVDKI 357
           + +N+        ++++    +   + +   FIVG PG   ++D  A+  L  + 
Sbjct: 327 EFLNKPLHRDHLLELVEDAGRL--GMRVKLYFIVGIPGFPPEEDTVASARLAREC 379


>gi|283850567|ref|ZP_06367855.1| Radical SAM domain protein [Desulfovibrio sp. FW1012B]
 gi|283574138|gb|EFC22110.1| Radical SAM domain protein [Desulfovibrio sp. FW1012B]
          Length = 452

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 45/273 (16%), Positives = 84/273 (30%), Gaps = 32/273 (11%)

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
                 +  ++     +V  G       EEI+RR P +++ +  +   RL +LL+     
Sbjct: 87  FAETVRTVRRQAPGATLVAGGSGYSLFPEEIMRRLPEIDLGLYLEGDIRLEQLLDHLDDP 146

Query: 147 KRVVDT-----------------DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKF 189
             V                     +  +  F    I D    ++   +  +  + GC   
Sbjct: 147 AAVPGIYYRRDGVPVFSGASGHDPFCDDWPFPAWDIFDLEPYKRIPYSMGVETKRGCAYR 206

Query: 190 CTFCVVPYTRG-IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS 248
           C +C      G     +S  +VV E ++L   G  +I       N              +
Sbjct: 207 CVYCCYYILNGRRYRLKSPDRVVAEIKELAKRGFKDIHFTDSVFNVP-------TPHAMA 259

Query: 249 DLLYSLSEIKGLVRLRYTTSHPR-DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307
            L     E+ G+    Y +     D    L  + G              +  D  L +M 
Sbjct: 260 ILGRMREEVPGMRWNAYLSPEGITDEFVELALSMGLSVFGC-----SPDTYGDAALAAMG 314

Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFP 340
           +     +  + ++ IR   P     ++F V  P
Sbjct: 315 KNMGVADIERAVEVIRRHPP-AEFGANFFVNGP 346


>gi|229016201|ref|ZP_04173151.1| Oxygen-independent coproporphyrinogen III oxidase 2 [Bacillus
           cereus AH1273]
 gi|229022436|ref|ZP_04178973.1| Oxygen-independent coproporphyrinogen III oxidase 2 [Bacillus
           cereus AH1272]
 gi|228738844|gb|EEL89303.1| Oxygen-independent coproporphyrinogen III oxidase 2 [Bacillus
           cereus AH1272]
 gi|228745084|gb|EEL95136.1| Oxygen-independent coproporphyrinogen III oxidase 2 [Bacillus
           cereus AH1273]
          Length = 496

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 51/308 (16%), Positives = 98/308 (31%), Gaps = 22/308 (7%)

Query: 77  AEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG-EEILRRSPIV--------NVV 127
            E     L      K    +    +  V    + Q  G E+       V         + 
Sbjct: 66  EETFSKDLSAFTEEKERMKQVKHVVSYVYLSVLQQLTGLEQSWGILTGVRPTKLLHKLLQ 125

Query: 128 VGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCD 187
            G        EL E     +  ++    + D   +L++V   Y  K  V+ ++ I   C 
Sbjct: 126 NGMSKEEAHQELRESYLIHEEKIELLQRIVD--CQLAVVPDLYRLKEEVSIYIGIPF-CP 182

Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG-------L 240
             C +C  P         S+   +      +      +   G  V      G        
Sbjct: 183 TKCAYCTFPAYAINGRQGSVDSFLGGLHYEVREIGKFLKEKGVTVTTIYYGGGTPTSITA 242

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300
           +     + ++  +  ++K +  +      P  ++   ++        +  + +  QS   
Sbjct: 243 EEMDMLYEEMYQAFPDVKDVREVTVEAGRPDTITPAKLEVL--NKWNIDRISINPQSYHQ 300

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
             LK++ R HT  E  +     R +  +  I+ D I+G PGE  D F+ T+D  +K+   
Sbjct: 301 ETLKAIGRHHTVEETIEKYHLAREMGMN-NINMDLIIGLPGEGLDIFKHTLDETEKLMPE 359

Query: 361 QAFSFKYS 368
                  S
Sbjct: 360 SLTVHTLS 367


>gi|168213123|ref|ZP_02638748.1| radical SAM domain protein [Clostridium perfringens CPE str. F4969]
 gi|170715327|gb|EDT27509.1| radical SAM domain protein [Clostridium perfringens CPE str. F4969]
          Length = 662

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 65/399 (16%), Positives = 123/399 (30%), Gaps = 54/399 (13%)

Query: 69  TCHIREKAAE--KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNV 126
           TC+I +   E  + +  L   + + + +        +          G  +++      V
Sbjct: 200 TCYIADSLDEIYEEHIVLPSFKEVSSDKRTYAECFKIQYDEQDPVR-GRTLVQEHNGKYV 258

Query: 127 VVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGC 186
           V+         E L+R              +  +  +   DGG      V   L    GC
Sbjct: 259 VINKPEMPLSREELDRVYA--------LPYQKTYHPIYEKDGGIAAIEEVKFSLVSSRGC 310

Query: 187 DKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDNGVCEITLLGQ--------------- 230
              C+FC + + +G  + SRS   +V+EA ++      +  +                  
Sbjct: 311 SGNCSFCAITFHQGRIVTSRSEDSIVEEAEEITKYDDFKGYIHDIGGPTANFRKPACKKQ 370

Query: 231 -NVNAWR---------GKGLDGEKCTFSDLLYSLSEIKGLVR------LRYTTSHPRDMS 274
             + A +          K ++ +   +  LL  + ++ G+ +      LRY         
Sbjct: 371 LTLGACKHKRCMSPGICKNMEVDHREYLHLLRRVRKLPGIKKVFIRSGLRYDYIMADKDD 430

Query: 275 DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH--TAYEYRQIIDRIRSVRPDIA-I 331
               +       +   L +  +  S  +LK M +    T  E+R+   RI         I
Sbjct: 431 TFFKELV--EHHVSGQLKVAPEHVSPNVLKYMGKPAGKTYDEFRRKFFRITERLGKKQFI 488

Query: 332 SSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM-----LEQVDENV 386
               +   PG   +D     + +  I Y       + P  GT  + M          E V
Sbjct: 489 IPYLMSSHPGCKLEDAIMLAEYLRDINYQPEQVQDFYPTPGTLSTTMFYTGLDPLTMEEV 548

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK 425
              R    +   R      N      + + L+ K G+E 
Sbjct: 549 YIPRSKEEKAMQRALLQFKNPKNYNIVYDALV-KVGRED 586


>gi|218780965|ref|YP_002432283.1| radical SAM domain protein [Desulfatibacillum alkenivorans AK-01]
 gi|218762349|gb|ACL04815.1| Radical SAM domain protein [Desulfatibacillum alkenivorans AK-01]
          Length = 547

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 40/218 (18%), Positives = 79/218 (36%), Gaps = 21/218 (9%)

Query: 170 YNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLG 229
            +     T  + +  GC   C FC V Y       RS   ++D   + +++         
Sbjct: 228 EDTTFDNTCLVEVSRGCPHGCRFCTVGYIYRPVRFRSEKVLLDCLDQGLEHTRKI----- 282

Query: 230 QNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR--LRYTTSHPRDMSDCLIKAHGDLDVL 287
                    GL G   +    L  L          L +++    +MS+ L+K+       
Sbjct: 283 ---------GLMGAAVSDLPCLDELCRRGEATEAVLSFSSFRANNMSEDLVKSLARGK-- 331

Query: 288 MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV-RPDIAISSDFIVGFPGETDDD 346
           +    L  ++GS R+   + +  T  +       +     P++ +   F+VG P ET +D
Sbjct: 332 VKTATLAPEAGSQRMRDVIKKNITEQDILDAAQILVEAGIPNLKLY--FMVGLPTETKED 389

Query: 347 FRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
               + L  +I +    + +   R+GT   ++   V +
Sbjct: 390 VEEIVALTKRIKHRFLKASQPIGRIGTIHISLNSFVPK 427


>gi|189423731|ref|YP_001950908.1| radical SAM protein [Geobacter lovleyi SZ]
 gi|189419990|gb|ACD94388.1| Radical SAM domain protein [Geobacter lovleyi SZ]
          Length = 545

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 43/262 (16%), Positives = 89/262 (33%), Gaps = 34/262 (12%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
           + +  GC + C FC   +       + L  +     + +      I L+G  V+  R   
Sbjct: 232 VEVSRGCPRGCRFCAAGFVYQPFRQQPLELLKAAVLEGL-QHRKTIGLVGAAVSDHR--- 287

Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
                 +   L   + E  G   L  ++     ++  +++           + L  + GS
Sbjct: 288 ------SIEALCNFIVEQDGSPSL--SSLRVDRLTPHMLELLAKSGH--RTISLAPEGGS 337

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDI-AISSDFIVGFPGETDDDFRATMDLV---- 354
            R+   + +  TA +     + +   R  I  +   FI+G PGE D D    + L     
Sbjct: 338 QRMRDLIRKNLTADQILDAAEAV--ARAGILNLRLYFIIGLPGENDQDLEELVKLTAAIK 395

Query: 355 ----------DKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVS 404
                      ++G        + P+  TP               ++  L+K++R     
Sbjct: 396 ERVVEQARRHKRLGEITLSVNPFIPKPFTP-LQWAGMCPLEELKRKVAWLEKRIRPLANL 454

Query: 405 FN--DACVGQIIEVLIEKHGKE 424
               +   G +++ L+ + G+E
Sbjct: 455 RLKVEDLHGCVLQALLSRGGRE 476


>gi|47606221|sp|Q9WYH2|Y337_THEMA RecName: Full=UPF0313 protein TM_0337
          Length = 567

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 62/310 (20%), Positives = 101/310 (32%), Gaps = 58/310 (18%)

Query: 159 KFERLSIVDGGYNRKRGVTAFLTIQ----EGCDKFCTFCVVPYTRGIEIS-RSLSQVVDE 213
            FER          K      +        GC   C+FC +   +   +S RS   +++E
Sbjct: 272 PFEREVHPFYAKMGKVKAIETVKFSITAVRGCFGNCSFCALTQHQTTHVSYRSKDSILEE 331

Query: 214 ARKLIDNGVCEITLL--GQNVNAWRGKGLDGEKCT----------------------FSD 249
            R L      + T+   G       G G    +                        F  
Sbjct: 332 VRILTKKKDFKGTITDVGGPTANLYGSGCSIRETKGQCQKFCLYPIVCKVVRPNHDEFIS 391

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDM---SDCLIKAHGDLDVLMP-YLHLPVQSGSDRILKS 305
           LL S+ +I G+  +  ++    D             +L    P  L L  +    ++L  
Sbjct: 392 LLESIRQIPGVRNVFVSSGIRHDFVFAEKDPDVFIRELVKYTPGQLKLAPEHAHPKVLSL 451

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAIS----SDFIVGFPGETDDDFRATMDLV-DKIGYA 360
           M +      + +   R  ++   +         FIVG PGE   +     D +   +GY 
Sbjct: 452 MRKP-PVELFLEFKKRFETLAKKMGKRKYVIGYFIVGHPGEGWRENNYLRDFILKHLGYF 510

Query: 361 QAFSFKYSPRLGTPGSNMLEQ-VD----ENVKAERLLCLQKKLREQQVSFNDACVGQIIE 415
                 ++P  GT  + M    VD    E V  ER L ++ K++E               
Sbjct: 511 PQQIQIFTPTPGTVSTAMYYSGVDPFTGEKVHVERSLKVRNKMKEN-------------- 556

Query: 416 VLIEKHGKEK 425
           VL +K G+EK
Sbjct: 557 VLFKKKGREK 566


>gi|118579053|ref|YP_900303.1| radical SAM domain-containing protein [Pelobacter propionicus DSM
           2379]
 gi|118501763|gb|ABK98245.1| Radical SAM domain protein [Pelobacter propionicus DSM 2379]
          Length = 570

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 56/315 (17%), Positives = 105/315 (33%), Gaps = 39/315 (12%)

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVV---GPQTYYRLPELLERARF 145
            L +   K      +++ G  A     +++  +P V+ VV   G   +  L E L R R 
Sbjct: 74  KLADDIKKIAPHTRIILGGPEASFGIFQLMHDNPAVDFVVRGEGEAVFRSLMETLLRQRG 133

Query: 146 GKRVVDTDYS--VEDKFERL--------------------SIVDGGYNRKRGVTAFLTIQ 183
                + D    +E+ F R                     S    G         +    
Sbjct: 134 SDPSSEKDQFQGIENLFYRWGNDILSGPLATGYLEMDSIPSPFQAGLVDLSKPLIYYETS 193

Query: 184 EGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
            GC   C FC+     G   S S+ ++  +   L+   + +I L+ +  N       DGE
Sbjct: 194 RGCPFSCAFCL-SSLEGRVRSFSMERIESDLVWLMSREIQQIKLVDRTFN------YDGE 246

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
           +      ++ L          +       ++D  ++    +        + VQS     L
Sbjct: 247 RAN---RIWELILANNRTSRFHFEIAADLLTDRNMEILRRVPPRTFGFEIGVQSFRADSL 303

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           + + RR         + R+R+    + +  D + G PGE+ D    ++D + ++      
Sbjct: 304 EQVQRRSNLERLAANVRRLRAET-VVELHLDLLAGLPGESYDGLLDSLDRLAELK---PH 359

Query: 364 SFKYSPRLGTPGSNM 378
             +  P     GS M
Sbjct: 360 VIQIEPLKLLKGSAM 374


>gi|228944609|ref|ZP_04106979.1| Oxygen-independent coproporphyrinogen III oxidase 2 [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
 gi|228815069|gb|EEM61320.1| Oxygen-independent coproporphyrinogen III oxidase 2 [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
          Length = 496

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 48/245 (19%), Positives = 80/245 (32%), Gaps = 9/245 (3%)

Query: 129 GPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
           G        EL E     +  ++    + D   +L++V   Y  K  V+ ++ I   C  
Sbjct: 127 GMSKEEAHQELRESYLIHEEKIELLQRIVD--CQLAVVPDLYRLKEEVSIYIGIPF-CPT 183

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT-- 246
            C +C  P         S+   +      +      +   G  V      G      T  
Sbjct: 184 KCAYCTFPAYAINGRQGSVDSFLGGLHYEVREIGKFLKEKGVTVTTIYYGGGTPTSITAE 243

Query: 247 -FSDLLYSLSEIKGLVR--LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
               L   + E    V+     T    R  +    K        +  + +  QS     L
Sbjct: 244 EMDMLYEEMYEAFPDVKNVREVTVEAGRPDTITPAKLEVLNKWNIDRISINPQSYHQETL 303

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           K++ R HT  E  +     R +  +  I+ D I+G PGE  D F+ T+D  +K+      
Sbjct: 304 KAIGRHHTVEETIEKYHLAREMGMN-NINMDLIIGLPGEGLDIFKHTLDETEKLMPESLT 362

Query: 364 SFKYS 368
               S
Sbjct: 363 VHTLS 367


>gi|83312358|ref|YP_422622.1| Fe-S oxidoreductase [Magnetospirillum magneticum AMB-1]
 gi|82947199|dbj|BAE52063.1| Fe-S oxidoreductase [Magnetospirillum magneticum AMB-1]
          Length = 753

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 52/319 (16%), Positives = 105/319 (32%), Gaps = 56/319 (17%)

Query: 72  IREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQ-----AEGEEILRRSPIVNV 126
           +   +  +   ++ R    +  R      +LV    CV++     A  E         ++
Sbjct: 285 VLGMSVHQRNEWISRELARRVKREMPETMILVGGHSCVSETFGRGAFPEYDYMVIGEADM 344

Query: 127 VVGPQTYYRLPELLERARFGKRVVD---TDYSVEDKFERLSIVDGGYNRK---------- 173
           VVGP        L+E+   G+R  +        +D   R       +N            
Sbjct: 345 VVGP--------LVEQLARGERPANLPGVISKFDDPGRRFIPGPKPHNLDALGGIALDFF 396

Query: 174 -------RGVTAF----LTIQEGCDK-FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNG 221
                  R  T +    + +  GC    CTFC     R    SRS S  VDE  +++  G
Sbjct: 397 DDINAVYRSSTGYQGTAVPLTRGCVWSRCTFCA---ERFSFRSRSPSLYVDELERIMATG 453

Query: 222 VCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD--MSDCLIK 279
               +    +          GE      +   +  ++  +RL ++     +       + 
Sbjct: 454 -RNPSFSASD------SDFGGEPEVLRQICEEI--VRRGLRLVFSGQIRVNKKYDVEFLS 504

Query: 280 AHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGF 339
                 V+   L+    + ++  ++   + +T     +  +    V+  I  + + ++G 
Sbjct: 505 LMKAAGVV--GLNFGADAFTENTIRLQRKGYTIETLIKNHEDC--VKAGITPNINIVIGT 560

Query: 340 PGETDDDFRATMDLVDKIG 358
           PGET+ D   T++      
Sbjct: 561 PGETEKDIDDTIEFFKDNR 579


>gi|47564821|ref|ZP_00235865.1| oxygen-independent coproporphyrinogen III oxidase, putative
           [Bacillus cereus G9241]
 gi|47558194|gb|EAL16518.1| oxygen-independent coproporphyrinogen III oxidase, putative
           [Bacillus cereus G9241]
          Length = 496

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 48/245 (19%), Positives = 80/245 (32%), Gaps = 9/245 (3%)

Query: 129 GPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
           G        EL E     +  ++    + D   +L++V   Y  K  V+ ++ I   C  
Sbjct: 127 GMSKEEAHQELRESYLIHEEKIELLQRIVD--CQLAVVPDLYRLKEEVSIYIGIPF-CPT 183

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT-- 246
            C +C  P         S+   +      +      +   G  V      G      T  
Sbjct: 184 KCAYCTFPAYAINGRQGSVDSFLGGLHYEVREIGKFLKEKGVTVTTIYYGGGTPTSITAE 243

Query: 247 -FSDLLYSLSEIKGLVR--LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
               L   + E    V+     T    R  +    K        +  + +  QS     L
Sbjct: 244 EMDMLYEEMYEAFPDVKNVREVTVEAGRPDTITPAKLEVLNKWNIDRISINPQSYHQETL 303

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           K++ R HT  E  +     R +  +  I+ D I+G PGE  D F+ T+D  +K+      
Sbjct: 304 KAIGRHHTVEETIEKYHLAREMGMN-NINMDLIIGLPGEGLDIFKHTLDETEKLMPESLT 362

Query: 364 SFKYS 368
               S
Sbjct: 363 VHTLS 367


>gi|315649048|ref|ZP_07902141.1| Radical SAM domain protein [Paenibacillus vortex V453]
 gi|315275483|gb|EFU38838.1| Radical SAM domain protein [Paenibacillus vortex V453]
          Length = 587

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 51/307 (16%), Positives = 98/307 (31%), Gaps = 27/307 (8%)

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +     + +   K   ++ +++ G     + +  ++R   V+ +V  +       LL+  
Sbjct: 67  IEETIKVIDIVKKIMPEVTIILGGPEVSYDTDYWMKRLHNVDFIVMGEGEETFHHLLQTI 126

Query: 144 R---------------FGKRVVDT--DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGC 186
                            G+ +V+     S+  +                   +     GC
Sbjct: 127 EGDRKFHFVYGVAYRKQGEVIVNPGRPKSILAELPSPHRFPEDIPHLGKRVVYFETSRGC 186

Query: 187 DKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT 246
              C FC+     G      + +   +   LI+NG   I  + +  N  R   LD     
Sbjct: 187 PFSCQFCLSSIEVG-VRYYDIERTKKDILYLIENGAKLIKFVDRTFNIKRDYALD----- 240

Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306
              +   L E  G    ++  +      + L     +    +    + VQS +D   + +
Sbjct: 241 ---MFEFLIENHGGCVFQFEITADIMRPEVLDYLAKNAPPGIFRFEIGVQSTNDPTNELV 297

Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
            RR    +  + +  I+  R  I    D I G P E  D FR T + V  +G  +     
Sbjct: 298 KRRQNFTKLSRTVTMIKDSR-KIDQHLDLIAGLPEEDYDTFRKTFNDVFALGPEELQLGF 356

Query: 367 YSPRLGT 373
                GT
Sbjct: 357 LKMLRGT 363


>gi|124266791|ref|YP_001020795.1| lipoyl synthase [Methylibium petroleiphilum PM1]
 gi|124259566|gb|ABM94560.1| lipoic acid synthetase [Methylibium petroleiphilum PM1]
          Length = 318

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 77/221 (34%), Gaps = 12/221 (5%)

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
           + +  ++ +    E  S  + G    +G   F+ + + C + C FC V + R   +    
Sbjct: 49  KQILREHKLHTVCEEASCPNIGECFGKGTATFMIMGDKCTRRCPFCDVGHGRPDPL--DP 106

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
            +  + A+ +    +  + +   +    R    DG    F + +  +  +    R+   T
Sbjct: 107 DEPQNLAKTIAALKLSYVVITSVD----RDDLRDGGAAHFVECIRQVRALSPATRIEILT 162

Query: 268 SHPRDMSDCLIKAH-GDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
              R  +D  ++        +M +        + R+ K             ++ R ++  
Sbjct: 163 PDFRGRADRALEILKAAPPDVMNHNL----ETAPRLYKEARPGSDYQFSLDLLKRFKAFA 218

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           P +   S  +VG  GETD++    M  +           +Y
Sbjct: 219 PGVPTKSGIMVGL-GETDEEILQVMRDMRAHDIDMITIGQY 258


>gi|288800059|ref|ZP_06405518.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Prevotella sp. oral taxon 299 str. F0039]
 gi|288333307|gb|EFC71786.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Prevotella sp. oral taxon 299 str. F0039]
          Length = 379

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 52/236 (22%), Positives = 86/236 (36%), Gaps = 19/236 (8%)

Query: 186 CDKFCTFCVV-PYTRGIEISRSLSQVVDEARKLIDNGVCEITL----LGQNVNAWRGKGL 240
           C   C++C     T        +  +  E   L      +I          VN     G 
Sbjct: 11  CSSKCSYCAFYSVTNNQLKQDYIEAICKEL-YLRKQFFKDIHFKNNQFKPLVNTVYFGGG 69

Query: 241 DG---EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQS 297
                ++  F  +  ++ +  G      T     D     +     L      + L +Q+
Sbjct: 70  TPSCLDEYAFEKIFNAIYDCFGNSFEEVTIECNPDD--ITLSYAKILKKYANRISLGIQT 127

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA-ISSDFIVGFPGETDDDFRATMDLVDK 356
            ++  LK +NRRH A E  + +D I+ V   I+ IS D I GFP ET  D+   +D   K
Sbjct: 128 FNNDQLKLINRRHNAEEAIRAVDIIKEV--GISNISIDLIFGFPKETLTDWLFDIDQAIK 185

Query: 357 IGYAQAFSFKYSPRLGTPGSNML-----EQVDENVKAERLLCLQKKLREQQVSFND 407
           +      ++      GT   ++L     EQ+ E +  E    L  KL E  ++  +
Sbjct: 186 LNVQHVSAYSLMFEEGTKLYHLLKKKKIEQISEELSVEMYDVLIDKLSEAGLAQYE 241


>gi|297583797|ref|YP_003699577.1| radical SAM domain-containing protein [Bacillus selenitireducens
           MLS10]
 gi|297142254|gb|ADH99011.1| Radical SAM domain protein [Bacillus selenitireducens MLS10]
          Length = 583

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 48/262 (18%), Positives = 90/262 (34%), Gaps = 40/262 (15%)

Query: 179 FLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK 238
           +     GC   C FC+    +G      + QV  +   LI+NG   I  + +  N  R  
Sbjct: 181 YFETSRGCPFRCQFCLSSIEQG-VRYFPVEQVKADILYLIENGAKLIKFIDRTFNINRDY 239

Query: 239 GLDGEKCTFSDL--LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQ 296
            +D  +    +        EI G +       +  + +             M    + VQ
Sbjct: 240 AMDMFRFLIDNHQGCQFQFEITGDIMRPEVLDYLNEHA----------PPGMFRFEIGVQ 289

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV-- 354
           S +D   + + RR    +  + I +I+     I    D I G P E  + F+ T + V  
Sbjct: 290 STNDHTNRIVERRQNFNKLSRTIQKIKEG-GKIDQHLDLIAGLPEENYESFKQTFNDVFA 348

Query: 355 ---DKIGY------------AQAFSFKYSPRLGTPGSNMLEQV---DENVKAERLLCLQK 396
              +++               +A  F Y+     P   +   V   D+ ++ +R+  + +
Sbjct: 349 LHPEELQLGFLKMLRGTGMRQRAKEFNYAYMDHAPYEILKNNVLSFDDVIRIKRVEDILE 408

Query: 397 KLREQQVSFNDACVGQIIEVLI 418
           K       +N   +   +  LI
Sbjct: 409 KY------WNRKQLDYTVPFLI 424


>gi|325269716|ref|ZP_08136327.1| radical SAM domain protein [Prevotella multiformis DSM 16608]
 gi|324987917|gb|EGC19889.1| radical SAM domain protein [Prevotella multiformis DSM 16608]
          Length = 710

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 49/310 (15%), Positives = 95/310 (30%), Gaps = 64/310 (20%)

Query: 127 VVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT--------- 177
           +           +L+       VV+  Y      E  +  D  Y R+             
Sbjct: 282 IEEESNKKHAQRILQAVDNVYAVVNPPYPTMTTEEVDAAYDLPYTREPHPKYRGKTIPAY 341

Query: 178 ----AFLTIQEGCDKFCTFCVVPYTRGIEIS-RSLSQVVDEARKLIDN----------GV 222
                 + I  GC   C FC +   +G  IS RS   ++ E +++++           G 
Sbjct: 342 EMIKHSVNIHRGCFGGCAFCTISAHQGKFISCRSKESILKEVKQVMEMPDFKGYLSDLGG 401

Query: 223 CEITLLGQ---------------NVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
               + G                 VN      L+ +     ++ +++ E+ G+ +    +
Sbjct: 402 PSANMYGMAGRNQRACEHCKRPSCVNPEICPNLETDHTRLLEIYHAVDELPGIKKSFIGS 461

Query: 268 SHPRDMSDCLIKAHGDLD---------------VLMPYLHLPVQSGSDRILKSMNRR--- 309
               D+   L+    D                  +   L +  +  SDR+LK M +    
Sbjct: 462 GVRYDL---LLHRSKDEKSNEAARQYTRELITRHVSGRLKVAPEHTSDRVLKLMRKPSFQ 518

Query: 310 --HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
             +   +    I+R   +R  I     FI   PG  ++D      L   + +       +
Sbjct: 519 QFYAFKKIFDRINREEGLRQQIIPY--FISSHPGCQEEDMAELAILTKDLDFHLEQVQDF 576

Query: 368 SPRLGTPGSN 377
           +P   T  + 
Sbjct: 577 TPTPMTVSTE 586


>gi|170750240|ref|YP_001756500.1| radical SAM domain-containing protein [Methylobacterium
           radiotolerans JCM 2831]
 gi|170656762|gb|ACB25817.1| Radical SAM domain protein [Methylobacterium radiotolerans JCM
           2831]
          Length = 547

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 51/332 (15%), Positives = 109/332 (32%), Gaps = 39/332 (11%)

Query: 62  ADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRS 121
           AD + ++  HI+E     +                     + V+ G       E+     
Sbjct: 77  ADAVFVSGMHIQEPQIHDIRDRARAAGK------------VTVLGGPSVSGAPEK----Y 120

Query: 122 PIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVD------GGYNRKRG 175
              + +   +      +L+ R   G      D  V +  +RL++ D           KR 
Sbjct: 121 GDFDYLHIGEIGDATDQLVAR-LDGDVTPPPDQVVLETKDRLALADFPAPAYEHAPLKRY 179

Query: 176 VTAFLTIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVCEITLLGQNVNA 234
           +   L    GC   C FC +P   G +   +S  Q+  E   ++        +   + N 
Sbjct: 180 LIGSLQFSSGCPYRCEFCDIPQLYGRQPRLKSPEQMCAELDAIVSQPGHPAVVYFVDDNF 239

Query: 235 WRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSD----CLIKAHGDLDVLMPY 290
                  G +    ++L  L   +         +    ++      +++        M  
Sbjct: 240 I------GNRKATREMLPHLVAWQKKNNYPLQFACEATLNMAKQPEILELMRQA-NFMT- 291

Query: 291 LHLPVQSGSDRILKSMNRRHTAY-EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           + + +++     LK +++ H A     + I+ + S    + ++S  I+G   +TD   + 
Sbjct: 292 VFVGIETPEAEALKGIDKTHNAAVPMYEAIETLNSY--GLEVTSGIILGLDSDTDKSEQN 349

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
            +D +D+                TP  + LE+
Sbjct: 350 LIDFIDRSAIPVLTINLLQALPKTPLWDRLER 381


>gi|24371909|ref|NP_715951.1| hypothetical protein SO_0311 [Shewanella oneidensis MR-1]
 gi|47606172|sp|Q8EJZ5|Y311_SHEON RecName: Full=UPF0313 protein SO_0311
 gi|24345741|gb|AAN53396.1|AE015479_3 conserved hypothetical protein [Shewanella oneidensis MR-1]
          Length = 786

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 54/339 (15%), Positives = 108/339 (31%), Gaps = 62/339 (18%)

Query: 116 EILRRSPIVNVVVGPQTYYRLPELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNR-- 172
           E        + ++  +        L +    + V V+      +  E  ++ D  Y R  
Sbjct: 301 EDKYLYAHASRILHQEQNPGCARALFQPHGDRGVWVNPPAWPLNTDEMDAVFDLPYKRVP 360

Query: 173 -----KRGVTAF------LTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDN 220
                K  + A+      + I  GC   C+FC +    G  I SRS   ++ E + + D 
Sbjct: 361 HPAYGKEKIPAYDMIKTSINIMRGCFGGCSFCSITEHEGRIIQSRSQESIIKEIKDIQDK 420

Query: 221 --GVCEIT--LLGQNVNAWR----------------------GKGLDGEKCTFSDLLYSL 254
             G   +   L G   N +R                         L  +     DL  + 
Sbjct: 421 VPGFTGVISDLGGPTANMYRLGCTSEKAEKTCRRLSCVYPSICGHLGTDHKHTIDLYRAA 480

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRRHTA 312
             + G+ ++   +    D++        +L    +  YL +  +   +  L  M +    
Sbjct: 481 RAVPGIKKILIASGVRYDLAIEDPAYVKELVQHHVGGYLKIAPEHTEEGPLSKMMKPGMG 540

Query: 313 YE--YRQIIDRI-RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY--AQAFSFKY 367
               ++++ D+  +    +  +   FI   PG TD+D       + +  +   Q  +F  
Sbjct: 541 AYDKFKELFDKFSKEAGKEQFLIPYFISAHPGTTDEDMLNLALWLKERKFKLDQVQNFYP 600

Query: 368 SPRLG------TPGSNMLE--------QVDENVKAERLL 392
           SP         T  +++           V +  +  RL 
Sbjct: 601 SPMANATTIYHTELNSLKNVKHTSEVVPVPKKGRQRRLH 639


>gi|256839650|ref|ZP_05545159.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|256738580|gb|EEU51905.1| conserved hypothetical protein [Parabacteroides sp. D13]
          Length = 616

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 51/326 (15%), Positives = 105/326 (32%), Gaps = 60/326 (18%)

Query: 111 QAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGY 170
           +   ++ L+++     +      Y    +L++      VV+  +    + E  +  D  Y
Sbjct: 224 EECLKDKLKQAKNFRHIEEESNKYNASRILQKVGKQMIVVNPPFPPMTEAEIDASYDLPY 283

Query: 171 NRKRGVTA-------------FLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEAR- 215
            R                    + I  GC   C FC +   +G  I SRS   ++ E + 
Sbjct: 284 TRLPHPKYKGKVIPAFEMIKFSVNIHRGCFGGCAFCTISAHQGKFIASRSKESILKEVKA 343

Query: 216 --KLIDNGVCEITLLGQNVNAWRGKGLDGEKCT----------------------FSDLL 251
             ++ D       L G + N +R KG D   C                         D+ 
Sbjct: 344 ITEMPDFKGYLSDLGGPSANMYRMKGKDERICAKCKKPSCISPVVCKNLNADHTPLLDIY 403

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL---------------DVLMPYLHLPVQ 296
            ++  +  + +    +    D+   L+  + D                  +   L +  +
Sbjct: 404 KAVDRLPEIKKSFIGSGVRYDL---LLHRYADESLNKAAQTYTEELIARHVSGRLKVAPE 460

Query: 297 SGSDRILKSMNRRHTAYE--YRQIIDRI-RSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
              D +LK M +   +    +++I D++ R    +  +   FI   PG T+ D      +
Sbjct: 461 HTQDEVLKQMRKPSFSQFGQFKKIFDKVNRQYGLNQQLIPYFISSHPGCTEADMAELAVI 520

Query: 354 VDKIGYAQAFSFKYSPRLGTPGSNML 379
              + +       ++P   T  + M 
Sbjct: 521 TKSLHFQLEQVQDFTPTPMTLATEMY 546


>gi|228984066|ref|ZP_04144253.1| Oxygen-independent coproporphyrinogen III oxidase 2 [Bacillus
           thuringiensis serovar tochigiensis BGSC 4Y1]
 gi|228775665|gb|EEM24044.1| Oxygen-independent coproporphyrinogen III oxidase 2 [Bacillus
           thuringiensis serovar tochigiensis BGSC 4Y1]
          Length = 496

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 48/245 (19%), Positives = 80/245 (32%), Gaps = 9/245 (3%)

Query: 129 GPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
           G        EL E     +  ++    + D   +L++V   Y  K  V+ ++ I   C  
Sbjct: 127 GMSKEEAHQELRESYLIHEEKIELLQRIVD--CQLAVVPDLYRLKEEVSIYIGIPF-CPT 183

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT-- 246
            C +C  P         S+   +      +      +   G  V      G      T  
Sbjct: 184 KCAYCTFPAYAINGRQGSVDSFLGGLHYEVREIGKFLKEKGVTVTTIYYGGGTPTSITAE 243

Query: 247 -FSDLLYSLSEIKGLVR--LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
               L   + E    V+     T    R  +    K        +  + +  QS     L
Sbjct: 244 EMDMLYEEMYEAFPDVKNVREVTVEAGRPDTITPAKLEVLNKWNIDRISINPQSYHQETL 303

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           K++ R HT  E  +     R +  +  I+ D I+G PGE  D F+ T+D  +K+      
Sbjct: 304 KAIGRHHTVEETIEKYHLAREMGMN-NINMDLIIGLPGEGLDIFKHTLDETEKLMPESLT 362

Query: 364 SFKYS 368
               S
Sbjct: 363 VHTLS 367


>gi|255014010|ref|ZP_05286136.1| hypothetical protein B2_08877 [Bacteroides sp. 2_1_7]
 gi|298375347|ref|ZP_06985304.1| radical SAM domain protein [Bacteroides sp. 3_1_19]
 gi|298267847|gb|EFI09503.1| radical SAM domain protein [Bacteroides sp. 3_1_19]
          Length = 616

 Score = 65.7 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 51/326 (15%), Positives = 105/326 (32%), Gaps = 60/326 (18%)

Query: 111 QAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGY 170
           +   ++ L+++     +      Y    +L++      VV+  +    + E  +  D  Y
Sbjct: 224 EECLKDKLKQAKNFRYIEEESNKYNASRILQKVGKQVIVVNPPFPPMTEAEIDASYDLPY 283

Query: 171 NRKRGVTA-------------FLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEAR- 215
            R                    + I  GC   C FC +   +G  I SRS   ++ E + 
Sbjct: 284 TRLPHPKYKGKVIPAFEMIKFSVNIHRGCFGGCAFCTISAHQGKFIASRSKESILKEVKA 343

Query: 216 --KLIDNGVCEITLLGQNVNAWRGKGLDGEKCT----------------------FSDLL 251
             ++ D       L G + N +R KG D   C                         D+ 
Sbjct: 344 ITEMPDFKGYLSDLGGPSANMYRMKGKDERICAKCKKPSCISPVVCKNLNADHTPLLDIY 403

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL---------------DVLMPYLHLPVQ 296
            ++  +  + +    +    D+   L+  + D                  +   L +  +
Sbjct: 404 KAVDRLPEIKKSFIGSGVRYDL---LLHRYADESLNKAAQTYTEELIARHVSGRLKVAPE 460

Query: 297 SGSDRILKSMNRRHTAYE--YRQIIDRI-RSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
              D +LK M +   +    +++I D++ R    +  +   FI   PG T+ D      +
Sbjct: 461 HTQDEVLKQMRKPSFSQFGQFKKIFDKVNRQYGLNQQLIPYFISSHPGCTEADMAELAVI 520

Query: 354 VDKIGYAQAFSFKYSPRLGTPGSNML 379
              + +       ++P   T  + M 
Sbjct: 521 TKSLHFQLEQVQDFTPTPMTLATEMY 546


>gi|226323917|ref|ZP_03799435.1| hypothetical protein COPCOM_01694 [Coprococcus comes ATCC 27758]
 gi|225207466|gb|EEG89820.1| hypothetical protein COPCOM_01694 [Coprococcus comes ATCC 27758]
          Length = 282

 Score = 65.7 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/204 (15%), Positives = 76/204 (37%), Gaps = 22/204 (10%)

Query: 173 KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQ-- 230
           + G + ++ I   C   C++C          S  +++  D   + +D  + E+  + +  
Sbjct: 58  ENGYSLYIGIPF-CPTTCSYCSFT-------SYPVAKWQDRMDEYVDALLKELAFIAEVS 109

Query: 231 ---NVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD------MSDCLIKAH 281
              ++NA    G      +   +   LS ++      +   +  +      +++  ++  
Sbjct: 110 KEKHLNAIYMGGGTPTTLSAQQMDRVLSFLEEHFSFEHLKEYTIEAGRPDSITEDKLRVI 169

Query: 282 GDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPG 341
                 +  + +  Q+   + L  + RRHT  +  +I    R +  D  I+ D I G PG
Sbjct: 170 RKHG--VGRISINPQTMQQKTLDVIGRRHTVEDVVRIFHLARELGFD-NINMDLIAGLPG 226

Query: 342 ETDDDFRATMDLVDKIGYAQAFSF 365
           E  ++   T+  + ++        
Sbjct: 227 EHPEEMEDTLRQIKELAPDSLTVH 250


>gi|239826362|ref|YP_002948986.1| cobalamin B12-binding domain protein [Geobacillus sp. WCH70]
 gi|239806655|gb|ACS23720.1| cobalamin B12-binding domain protein [Geobacillus sp. WCH70]
          Length = 590

 Score = 65.7 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 57/368 (15%), Positives = 118/368 (32%), Gaps = 42/368 (11%)

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +     +     K   D+ +VV G     +  E +   P  + +V  +      + L   
Sbjct: 67  IEETIKVVKMLKKIAPDITIVVGGPEVSYDVREWMETVPEFDFIVIGEGEETFKQFLMEM 126

Query: 144 RFGKRVVDT---------DYSVEDKFERLSIVDGGYNRKRG--------VTAFLTIQEGC 186
              +   +          D  +  +  ++ + D     +             ++    GC
Sbjct: 127 HGDRNFHNVHGLAFRHHGDIFINPQRNKIRLADMPSPFRFPEDIPHLPKRITYIETSRGC 186

Query: 187 DKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT 246
              C FC+     G        ++ ++ R L+ +G   I  + +  N  R   +D  +  
Sbjct: 187 PFSCQFCLSSIEVG-VRYFDREKIKEDIRYLMKHGARTIKFVDRTFNISRSYAMDMFQFL 245

Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAH-GDLDVLMPYLHLPVQSGSDRILKS 305
             +       + G V     T+    M   +I+    +    +    + VQS +D + + 
Sbjct: 246 IDEH------VPGTVFQFEITADI--MRPEVIEFLNKEAPPGLFRFEIGVQSTNDEVNRL 297

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           + R+    +  + +  ++     IA   D I G P E    FR T + V  +   +    
Sbjct: 298 VMRKQNFEKLTRTVMMVKEG-GKIAQHLDLIAGLPEEDYTSFRKTFNDVFALRPEELQLG 356

Query: 366 KYSPRLGT--------PGSNMLEQVDENVKAERLLCLQKKLREQQVS------FNDACVG 411
                 GT         G   ++     V    +L     +R +QV       +N   + 
Sbjct: 357 FLKMLRGTGLRLRAKDYGYVFMDHAPYEVLQNNVLSFDDIIRIKQVEDVLEKYWNAHRMD 416

Query: 412 QIIEVLIE 419
           + IE L+ 
Sbjct: 417 ETIEYLVT 424


>gi|126460724|ref|YP_001057002.1| radical SAM domain-containing protein [Pyrobaculum calidifontis JCM
           11548]
 gi|126250445|gb|ABO09536.1| Radical SAM domain protein [Pyrobaculum calidifontis JCM 11548]
          Length = 565

 Score = 65.7 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 56/333 (16%), Positives = 115/333 (34%), Gaps = 39/333 (11%)

Query: 165 IVDGGYNRKRGVTAFLTIQEGCDKF----CTFCVVPYTRGIEISRSLSQVVDEARKLIDN 220
           IV    N  + +   L     C +F    C+FC      G   +R +  VV+E   L + 
Sbjct: 174 IVTQHPNYGKNLIVELETYRSCPRFVSGGCSFCTT-VAYGPVSTRPIEGVVEEVEALYNA 232

Query: 221 GVCEITLLGQ-NVNAWRGKGL---DGEKCTFSDLLYSLSEI----KGLVRLRYTTSHPRD 272
           GV    L  Q +  A+    +   D  +   + +   L  I     GL  L     +P  
Sbjct: 233 GVVHFRLGRQADFYAYMAHDVGKEDFPRPNPAAIERLLVGIRSAAPGLKTLHIDNVNPGT 292

Query: 273 MSDCLIKAHGDLDVLMPYLH------LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV- 325
           ++    ++     +LM Y        + +++   R++K  N +    +  + I+    + 
Sbjct: 293 VATWKQESAEVTKLLMKYGTPGNVAAMGIETADPRVIKINNLKTLPEQSLEAIELFTRIG 352

Query: 326 -------RPDIAISSDFIVGFPGETDDDFRATMDLVDKI---GYA--QAFSFKYSPRLGT 373
                   P I    +F+ G PGET + +R  M+ + ++   G    +    +      +
Sbjct: 353 FVRGKNGMPYILAGINFVAGLPGETAETYRLNMEFLRQVLERGLVVRRVNIRQVLVFPTS 412

Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACV------GQIIEVLIEKHGKEKGK 427
               M +++   ++ ER    Q+     +  F+   +      G ++  +  +     G 
Sbjct: 413 RLWPMAKKLTARLR-ERKRLFQQFKTWVREVFDREMLRRIVPRGTVLREVFTEVHYHGGT 471

Query: 428 LVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKI 460
              +      +        +G  I V + D   
Sbjct: 472 YARQVGSYPLLAYIPTRVELGRYIDVVVVDHGS 504


>gi|148265179|ref|YP_001231885.1| radical SAM domain-containing protein [Geobacter uraniireducens
           Rf4]
 gi|146398679|gb|ABQ27312.1| Radical SAM domain protein [Geobacter uraniireducens Rf4]
          Length = 351

 Score = 65.7 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 36/214 (16%), Positives = 69/214 (32%), Gaps = 17/214 (7%)

Query: 173 KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS-QVVDEARKLIDNGVCE---ITLL 228
           K+ +  F     GC   C FC      G         +++ +     D+G C    +   
Sbjct: 2   KQPIVPFFISHRGCPHKCVFCDQVKIAGAVGEFPTGTEILAKIASYRDSGRCRSVGVAFY 61

Query: 229 GQNVNAWRGKGLDGEKCTFSDLLY--SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV 286
           G    A      +G       L+    +  I+   R              +         
Sbjct: 62  GGTFTALSPAVQEGLLKPLQPLVASGEVGSIRVSTRPDAIDLQTVQFLREM--------- 112

Query: 287 LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDD 346
            +  + L VQS +D +L    R HT+ +  +    +R     +A+ +  + G PG+T + 
Sbjct: 113 GVKTVELGVQSMADDVLDLAGRGHTSADVARASRMLREA--GLALGAQLMPGLPGDTSEK 170

Query: 347 FRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
              ++  V  +       +      GT  ++  E
Sbjct: 171 AMDSLARVIALQPDFLRIYPTLVIAGTKLADFYE 204


>gi|170691577|ref|ZP_02882742.1| lipoic acid synthetase [Burkholderia graminis C4D1M]
 gi|170143782|gb|EDT11945.1| lipoic acid synthetase [Burkholderia graminis C4D1M]
          Length = 335

 Score = 65.7 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 82/220 (37%), Gaps = 10/220 (4%)

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
           + +  ++++    E  S  + G    +G   F+ + + C + C FC V + R   +    
Sbjct: 70  KQILREHNLHTVCEEASCPNIGECFGKGTATFMIMGDKCTRRCPFCDVGHGRPDPL--DA 127

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
            +  + AR +    +  + +   +    R    DG    F + +    E+    R+   T
Sbjct: 128 DEPANLARTIAALKLKYVVITSVD----RDDLRDGGAAHFVECIRQTRELSPGTRIEILT 183

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
               D    L +A G L+   P +         R+ K            +++   +++ P
Sbjct: 184 P---DFRGRLDRALGILNAAPPDVMNHNLETVPRLYKEARPGSDYAHSLKLLKDFKALHP 240

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           D+A  S  +VG  GET+++    M  + +         +Y
Sbjct: 241 DVATKSGLMVGL-GETEEEILQVMRDLREHDVDMLTIGQY 279


>gi|21242451|ref|NP_642033.1| Mg-protoporphyrin IX monomethyl ester oxidative cyclase
           [Xanthomonas axonopodis pv. citri str. 306]
 gi|21107896|gb|AAM36569.1| Mg-protoporphyrin IX monomethyl ester oxidative cyclase
           [Xanthomonas axonopodis pv. citri str. 306]
          Length = 496

 Score = 65.7 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 44/251 (17%), Positives = 74/251 (29%), Gaps = 22/251 (8%)

Query: 142 RARFGKRVVDTDYS---VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
           R   G +  D   S     D  +          R    +  +    GC   C +C  P  
Sbjct: 171 RVHPGAQPPDARLSGLPAWDLVDMPRYRRFWQQRHGHFSLNMAASRGCPFRCNWCAKPIW 230

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258
                 R   +V  E   L      +   +  ++  +    ++            L +  
Sbjct: 231 GNHYKRRGAEEVAAEMIHLKRRYRPDHIWMADDIFGFHIDWVET-------FAQQLRDAD 283

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           G V   ++     D++     A            +  +SGS RIL  M +     E    
Sbjct: 284 GAV--PFSIQTRADLASE-RMAAALARAGCVEAWIGAESGSQRILDKMTKGTQVGEVIAA 340

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
            +R+ +    I +     +G+ GE  +D  AT  LV +            P  GT     
Sbjct: 341 RERLGTQ--GIRVGFFIQLGYLGEELEDILATRALVTQANPDIIGVSVSYPLPGTKFY-- 396

Query: 379 LEQVDENVKAE 389
                E VK +
Sbjct: 397 -----EEVKTQ 402


>gi|182416175|ref|YP_001821241.1| radical SAM domain-containing protein [Opitutus terrae PB90-1]
 gi|177843389|gb|ACB77641.1| Radical SAM domain protein [Opitutus terrae PB90-1]
          Length = 501

 Score = 65.7 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 55/304 (18%), Positives = 103/304 (33%), Gaps = 36/304 (11%)

Query: 79  KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSP-IVNVVVGPQTYYRLP 137
              + L      K      G ++  ++ G  A A+ E +LR    +V+ V+  +    + 
Sbjct: 69  SYQAALSVAAAFKELGRAAGTNVTTILGGHHASADAEIVLRNHTAVVDFVIAGEGETAML 128

Query: 138 ELLER-----------------ARFGKRVVDTDYSVEDKFERLSIVDG-GYNRKRGVTAF 179
           E L+R                  +     +    +  D     +   G     K G   +
Sbjct: 129 EFLQRFPGVAGTPGLICIREGRVQRNPPPLLLSQAQLDTLPPTAPTSGTNVTGKFGHITY 188

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
           ++   GC   C FC V   R    S  +++V  + R L+  G   I  +  N  A   + 
Sbjct: 189 IS-ARGCPLGCAFCAVGNQRIRAKS--VAKVAADVRLLVAQGHTRIA-IEDNFFAHTPQR 244

Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
            +      ++L           + R  +   + + + L +A          ++L V+S +
Sbjct: 245 TEELCGALAELRSEGLGFTWDCQTRVESMDRKGLPELLSRA------GCEAVYLGVESLN 298

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAIS-----SDFIVGFPGETDDDFRATMDLV 354
              L+ +N+      Y   +     V P +  S      +   G PGE DD    T+  +
Sbjct: 299 PDQLRYLNKTPNPERYLNRLR--HRVIPALLASRVGCYLNLQFGLPGENDDHHSQTLATL 356

Query: 355 DKIG 358
             IG
Sbjct: 357 RAIG 360


>gi|209885794|ref|YP_002289651.1| Fe-S oxidoreductase [Oligotropha carboxidovorans OM5]
 gi|209873990|gb|ACI93786.1| Fe-S oxidoreductase [Oligotropha carboxidovorans OM5]
          Length = 529

 Score = 65.7 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 53/329 (16%), Positives = 105/329 (31%), Gaps = 48/329 (14%)

Query: 62  ADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRS 121
           A+ + ++  HI+ K    +                     +V + G    A  +      
Sbjct: 76  AEAVFVSGMHIQRKQINDICRRAHEAER------------VVALGGPSVSACPD----YY 119

Query: 122 PIVNVVVGPQTYYRLPELLER-----ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGV 176
           P  + +   +      EL  R     AR  ++V  T +      E           ++  
Sbjct: 120 PEFDYLHIGELGDATEELFVRLADDVARPPRQVALTTHERLAMAEFPQPAYELIPLRKYF 179

Query: 177 TAFLTIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVCEIT-LLGQNVNA 234
              +    GC   C FC +P   G     +S  QV+ E  K++ NG+      +  N   
Sbjct: 180 LGSIQFSSGCPYQCEFCDIPGLYGRNPRLKSPQQVLAELDKMVANGLSGAVYFVDDNFI- 238

Query: 235 WRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLH-- 292
                  G +    +LL  L E +   R  Y      + +            ++  +H  
Sbjct: 239 -------GNRRAVLELLPHLVEWQK--RNGYAVQFACEATLN----IAKRPEILQLMHDA 285

Query: 293 ------LPVQSGSDRILKSMNRRHTAY-EYRQIIDRIRSVRPDIAISSDFIVGFPGETDD 345
                   +++   + L++M+++H       + +  + S    + + S  I+G   +TDD
Sbjct: 286 FFLTVFCGIETPDPKALQAMSKQHNMMVPILEGVKTLNSY--GLEVVSGIILGLDTDTDD 343

Query: 346 DFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
                ++ VD+                TP
Sbjct: 344 SGERILEFVDQSQIPLLTINLLQALPKTP 372


>gi|148265681|ref|YP_001232387.1| putative radical SAM protein [Geobacter uraniireducens Rf4]
 gi|146399181|gb|ABQ27814.1| conserved hypothetical radical SAM protein [Geobacter
           uraniireducens Rf4]
          Length = 319

 Score = 65.7 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/111 (28%), Positives = 47/111 (42%), Gaps = 4/111 (3%)

Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330
            D +  L+        +   + L +QS  D ILK +NR HT  EY   ++RI      I 
Sbjct: 132 SDEAIQLLAGLARNHYVC--VELGLQSMDDAILKQINRGHTLSEYLNTVNRIAGR--GID 187

Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I +  I GFPGET   F  T DL+  +        +     GT  +++   
Sbjct: 188 ICTHLIYGFPGETHAGFLKTADLIASLPVNSLKIHQLHAVRGTRLADLYHD 238


>gi|257453305|ref|ZP_05618604.1| hypothetical protein F3_09603 [Fusobacterium sp. 3_1_5R]
 gi|317059837|ref|ZP_07924322.1| Fe-S oxidoreductase family 2 [Fusobacterium sp. 3_1_5R]
 gi|313685513|gb|EFS22348.1| Fe-S oxidoreductase family 2 [Fusobacterium sp. 3_1_5R]
          Length = 586

 Score = 65.7 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 46/281 (16%), Positives = 94/281 (33%), Gaps = 35/281 (12%)

Query: 135 RLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCV 194
            +P   +     KR +  D +    +    +        R   A + IQ GC + C FC 
Sbjct: 198 WIPRFHKEGEKVKRAIVEDLNDTSYYAEQIVPYIEVVHDR---ATVEIQRGCSRGCRFCQ 254

Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL 254
                     RSL + ++   K+I           Q+               +S++   +
Sbjct: 255 AGIVYRPVRERSLEKNLELIEKMI-----------QDTGYSEVSLSSLSSSDYSNIHQLI 303

Query: 255 SEIK-----GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
           + IK       V +   +      S  + ++               ++GS R+   +N+ 
Sbjct: 304 AGIKANPLNKNVGVSLPSLRMNPDSVRVAESISGGKR--TGFTFAPEAGSQRMRDIINKG 361

Query: 310 HTAYEYRQIIDR-IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY--------- 359
            T  E     +  +R+   ++     F++G P ET +D  A  +L  K+ +         
Sbjct: 362 VTEEEILATAEEAVRAGWDNLKFY--FMIGLPFETKEDVLAIHELAKKVMFKCRPISRRV 419

Query: 360 -AQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLR 399
                   + P+  TP +   +Q+      E+   L++  +
Sbjct: 420 QVTVSVSNFVPKPHTPFA-WQKQMGFEEMYEKHSLLREAFK 459


>gi|297199599|ref|ZP_06916996.1| coproporphyrinogen III oxidase [Streptomyces sviceus ATCC 29083]
 gi|197713473|gb|EDY57507.1| coproporphyrinogen III oxidase [Streptomyces sviceus ATCC 29083]
          Length = 420

 Score = 65.7 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 52/243 (21%), Positives = 87/243 (35%), Gaps = 29/243 (11%)

Query: 186 CDKFCTFCVV-PYTRGIEI-------SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG 237
           C   C +C    YT            SR      + A  LID       +LG +    R 
Sbjct: 49  CATRCGYCDFNTYTATELRGSGGVLASRD-----NYAETLIDEIRLARKVLGDDPRPVRT 103

Query: 238 KGLDGEKCTFS---DLLYSLSEIKGLVRL-----RYTTSHPRDMSDCLIKAHGDLDVLMP 289
             + G   T     DL+  L  I+    L       T ++P  +    + A  +      
Sbjct: 104 VFVGGGTPTLLAAGDLVRMLGAIRDEFGLAADAEVTTEANPESVDPEYLAALREGG--FN 161

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
            +   +QS    +LK ++R HT       +   R+      ++ D I G PGE+DDD+RA
Sbjct: 162 RVSFGMQSARQHVLKVLDRTHTPGRPEACVAEARAA-GFAHVNLDLIYGTPGESDDDWRA 220

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTPGSN--MLEQVD---ENVKAERLLCLQKKLREQQVS 404
           +++     G     ++      GT  +      +V    ++  A+R L     L E    
Sbjct: 221 SLEAAIGAGPDHVSAYALIVEEGTQLARRIRRGEVPMTDDDEHADRYLIADSMLAEAGFD 280

Query: 405 FND 407
           + +
Sbjct: 281 WYE 283


>gi|94967904|ref|YP_589952.1| radical SAM family Fe-S protein [Candidatus Koribacter versatilis
           Ellin345]
 gi|94549954|gb|ABF39878.1| Fe-S protein, radical SAM family [Candidatus Koribacter versatilis
           Ellin345]
          Length = 495

 Score = 65.7 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 42/210 (20%), Positives = 73/210 (34%), Gaps = 19/210 (9%)

Query: 183 QEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG 242
             GC   C +C  P +      R    V  E  +L      +    G +V A   +    
Sbjct: 211 SRGCPYRCNWCAKPISGDRFHLRPARLVAQELCELRTRFGADHAWFGDDVFALDHRWA-- 268

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
                ++L   +  I G+       S    M+   + A          + + V+SGS ++
Sbjct: 269 -----AELADEVERI-GVRVPFKVQSRADLMTVSTVDALRRAG--CAEVWMGVESGSQKV 320

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVR--PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
           L +M +        + + R R +     I       +G+PGE  D+ + T+ LV +    
Sbjct: 321 LDAMEKG----LKVEAVSRARKMLGEAGIQACYFLQLGYPGELWDEIQQTIALVRRTRPD 376

Query: 361 QAFSFKYSPRLGTPGSNMLEQVDENVKAER 390
                   P   T      EQV + + A+R
Sbjct: 377 DIGVSVSYPLPNT---RFYEQVRDQLGAKR 403


>gi|228932288|ref|ZP_04095171.1| Oxygen-independent coproporphyrinogen III oxidase 2 [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
 gi|229154577|ref|ZP_04282694.1| Oxygen-independent coproporphyrinogen III oxidase 2 [Bacillus
           cereus ATCC 4342]
 gi|228628975|gb|EEK85685.1| Oxygen-independent coproporphyrinogen III oxidase 2 [Bacillus
           cereus ATCC 4342]
 gi|228827356|gb|EEM73107.1| Oxygen-independent coproporphyrinogen III oxidase 2 [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
          Length = 496

 Score = 65.7 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 48/245 (19%), Positives = 80/245 (32%), Gaps = 9/245 (3%)

Query: 129 GPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
           G        EL E     +  ++    + D   +L++V   Y  K  V+ ++ I   C  
Sbjct: 127 GMSKEEAHQELRESYLIHEEKIELLQRIVD--CQLAVVPDLYRLKEEVSIYIGIPF-CPT 183

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT-- 246
            C +C  P         S+   +      +      +   G  V      G      T  
Sbjct: 184 KCAYCTFPAYAINGRQGSVDSFLGGLHYEVREIGKFLKEKGVTVTTIYYGGGTPTSITAE 243

Query: 247 -FSDLLYSLSEIKGLVR--LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
               L   + E    V+     T    R  +    K        +  + +  QS     L
Sbjct: 244 EMDMLYEEMYEAFPDVKNVREVTVEAGRPDTITPAKLEVLNKWNIDRISINPQSYHQETL 303

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           K++ R HT  E  +     R +  +  I+ D I+G PGE  D F+ T+D  +K+      
Sbjct: 304 KAIGRHHTVEETIEKYHLAREMGMN-NINMDLIIGLPGEGLDIFKHTLDETEKLMPESLT 362

Query: 364 SFKYS 368
               S
Sbjct: 363 VHTLS 367


>gi|257791400|ref|YP_003182006.1| oxygen-independent coproporphyrinogen III oxidase [Eggerthella
           lenta DSM 2243]
 gi|257475297|gb|ACV55617.1| oxygen-independent coproporphyrinogen III oxidase [Eggerthella
           lenta DSM 2243]
          Length = 370

 Score = 65.7 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 46/236 (19%), Positives = 102/236 (43%), Gaps = 24/236 (10%)

Query: 186 CDKFCTFC-----VVPYTRGIEISRSLSQVVDEARKLIDNG----VCEITLLGQNVNAWR 236
           C K C +C      VP     EI   +  +  + R+    G    V  + L G   +   
Sbjct: 16  CVKRCAYCDFATAAVP-AGAPEIEAYVEDLSLQIRRKAKEGELGAVETVYLGGGTPSHVG 74

Query: 237 GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQ 296
             GL     T S  ++   E++  +      ++P  +++ +++    L   +  L + VQ
Sbjct: 75  LAGLSMLLYTLSLSMHLTDEVECTME-----ANPESLTERMVRDIWALG--VNRLSIGVQ 127

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
           S  D +L+++ R H++ + R+ I+  R+   ++++  D + G PG++ + F A++    +
Sbjct: 128 SFDDDVLRTLGRAHSSDDARRAIEAARTRFENVSV--DLMCGIPGQSAEGFEASVREAVR 185

Query: 357 IGYAQAFSFKYSPRLGTP--GSNM---LEQVDENVKAERLLCLQKKLREQQVSFND 407
           +G      +  +    TP   + +   LE+ D++V+A  +    + L  +     +
Sbjct: 186 LGATHVSVYPLTIEPHTPFDAAVLAGELEEPDDDVEAAHMQIAARVLDSEGFERYE 241


>gi|196046985|ref|ZP_03114205.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Bacillus cereus 03BB108]
 gi|225862839|ref|YP_002748217.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Bacillus cereus 03BB102]
 gi|196022214|gb|EDX60901.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Bacillus cereus 03BB108]
 gi|225789844|gb|ACO30061.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Bacillus cereus 03BB102]
          Length = 495

 Score = 65.7 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 48/245 (19%), Positives = 80/245 (32%), Gaps = 9/245 (3%)

Query: 129 GPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
           G        EL E     +  ++    + D   +L++V   Y  K  V+ ++ I   C  
Sbjct: 126 GMSKEEAHQELRESYLIHEEKIELLQRIVD--CQLAVVPDLYRLKEEVSIYIGIPF-CPT 182

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT-- 246
            C +C  P         S+   +      +      +   G  V      G      T  
Sbjct: 183 KCAYCTFPAYAINGRQGSVDSFLGGLHYEVREIGKFLKEKGVTVTTIYYGGGTPTSITAE 242

Query: 247 -FSDLLYSLSEIKGLVR--LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
               L   + E    V+     T    R  +    K        +  + +  QS     L
Sbjct: 243 EMDMLYEEMYEAFPDVKNVREVTVEAGRPDTITPAKLEVLNKWNIDRISINPQSYHQETL 302

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           K++ R HT  E  +     R +  +  I+ D I+G PGE  D F+ T+D  +K+      
Sbjct: 303 KAIGRHHTVEETIEKYHLAREMGMN-NINMDLIIGLPGEGLDIFKHTLDETEKLMPESLT 361

Query: 364 SFKYS 368
               S
Sbjct: 362 VHTLS 366


>gi|148240544|ref|YP_001225931.1| Fe-S oxidoreductase [Synechococcus sp. WH 7803]
 gi|147849083|emb|CAK24634.1| Fe-S oxidoreductase [Synechococcus sp. WH 7803]
          Length = 524

 Score = 65.7 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 67/333 (20%), Positives = 116/333 (34%), Gaps = 43/333 (12%)

Query: 62  ADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGE--EILR 119
           A+L+V++   ++    + +   +   +            L V V G  A +  +  EI  
Sbjct: 66  AELVVISGMIVQ---KDDMQVQIEEAKR---------RGLPVAVGGPYASSTPDAPEIAD 113

Query: 120 RSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAF 179
               V +  G  T     E ++R   G R        +     +   D          + 
Sbjct: 114 ADFKV-LDEGEITLPMFVEAIQRGDSGGRFSSEGEKPDVTSTPIPRFDLLELDAYDSMS- 171

Query: 180 LTIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK 238
           +    GC   C FC +    G +  +++  Q+V E + L D G      L  +       
Sbjct: 172 VQFSRGCPFNCEFCDIIVLYGRKPRTKTPDQLVAELQSLYDLGWRRSIFLVDD------- 224

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLR-YTTSHPRDMSDCLIKAHGDLDVLMPYLH----- 292
              G K     L   L EIK     R Y  S   + S  L     D + +M  +H     
Sbjct: 225 NFIGNKRNAKLL---LPEIKHWQEERGYPFSFATEASVDL----ADDEEMMRMMHEARFE 277

Query: 293 ---LPVQSGSDRILKSMNR-RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFR 348
              L +++  +  L++  + ++T       +DRI +    I + + FI+GF GE +   R
Sbjct: 278 SVFLGIETPDEASLETSRKIQNTRNPLDAAVDRITAN--GIRVMAGFIIGFDGEKNGAGR 335

Query: 349 ATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
             +D V + G   A          T     LE+
Sbjct: 336 RIVDFVTRTGIPAAMMGMLQALPNTALWYRLEK 368


>gi|30261010|ref|NP_843387.1| coproporphyrinogen III oxidase [Bacillus anthracis str. Ames]
 gi|47526162|ref|YP_017511.1| coproporphyrinogen III oxidase [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|65318289|ref|ZP_00391248.1| COG0635: Coproporphyrinogen III oxidase and related Fe-S
           oxidoreductases [Bacillus anthracis str. A2012]
 gi|229089931|ref|ZP_04221185.1| Oxygen-independent coproporphyrinogen III oxidase 2 [Bacillus
           cereus Rock3-42]
 gi|254682930|ref|ZP_05146791.1| coproporphyrinogen III oxidase [Bacillus anthracis str. CNEVA-9066]
 gi|254725717|ref|ZP_05187499.1| coproporphyrinogen III oxidase [Bacillus anthracis str. A1055]
 gi|254740009|ref|ZP_05197701.1| coproporphyrinogen III oxidase [Bacillus anthracis str. Kruger B]
 gi|254753348|ref|ZP_05205384.1| coproporphyrinogen III oxidase [Bacillus anthracis str. Vollum]
 gi|254758446|ref|ZP_05210473.1| coproporphyrinogen III oxidase [Bacillus anthracis str. Australia
           94]
 gi|300119261|ref|ZP_07056955.1| coproporphyrinogen III oxidase [Bacillus cereus SJ1]
 gi|30254624|gb|AAP24873.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Bacillus anthracis str. Ames]
 gi|47501310|gb|AAT29986.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Bacillus anthracis str. 'Ames Ancestor']
 gi|228693387|gb|EEL47094.1| Oxygen-independent coproporphyrinogen III oxidase 2 [Bacillus
           cereus Rock3-42]
 gi|298723369|gb|EFI64117.1| coproporphyrinogen III oxidase [Bacillus cereus SJ1]
          Length = 496

 Score = 65.7 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 48/245 (19%), Positives = 80/245 (32%), Gaps = 9/245 (3%)

Query: 129 GPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
           G        EL E     +  ++    + D   +L++V   Y  K  V+ ++ I   C  
Sbjct: 127 GMSKEEAHQELRESYLIHEEKIELLQRIVD--CQLAVVPDLYRLKEEVSIYIGIPF-CPT 183

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT-- 246
            C +C  P         S+   +      +      +   G  V      G      T  
Sbjct: 184 KCAYCTFPAYAINGRQGSVDSFLGGLHYEVREIGKFLKEKGVTVTTIYYGGGTPTSITAE 243

Query: 247 -FSDLLYSLSEIKGLVR--LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
               L   + E    V+     T    R  +    K        +  + +  QS     L
Sbjct: 244 EMDMLYEEMYEAFPDVKNVREVTVEAGRPDTITPAKLEVLNKWNIDRISINPQSYHQETL 303

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           K++ R HT  E  +     R +  +  I+ D I+G PGE  D F+ T+D  +K+      
Sbjct: 304 KAIGRHHTVEETIEKYHLAREMGMN-NINMDLIIGLPGEGLDIFKHTLDETEKLMPESLT 362

Query: 364 SFKYS 368
               S
Sbjct: 363 VHTLS 367


>gi|257454384|ref|ZP_05619646.1| Fe-S oxidoreductase [Enhydrobacter aerosaccus SK60]
 gi|257448150|gb|EEV23131.1| Fe-S oxidoreductase [Enhydrobacter aerosaccus SK60]
          Length = 799

 Score = 65.7 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 52/303 (17%), Positives = 99/303 (32%), Gaps = 47/303 (15%)

Query: 112 AEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYN 171
                +++R   ++V + P       E            + DY  +  + RL   + G  
Sbjct: 365 HNARALVQRHGDIDVWLNPPPIPLTME------------EMDYIFDLPYARLPHPNYGNA 412

Query: 172 RKRGVTAF---LTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDNGVCEITL 227
           R          + I  GC   CTFC +    G  I +RS   ++ E +K+ D       +
Sbjct: 413 RIPAYDMIKLSVNIMRGCFGGCTFCSITEHEGRIIQNRSEESILGEIKKIRDTEPSFTGV 472

Query: 228 L----GQNVNAWRGKGLDG----------------------EKCTFSDLLYSLSEIKGLV 261
           +    G   N +R    D                       +    + L     +IKG+ 
Sbjct: 473 ISDLGGPTANMYRLHCKDDAIEKNCRKPSCVYPDICDNLLTDHSHLTQLYRKARDIKGVK 532

Query: 262 RLRYTTSHPRDMSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRR--HTAYEYRQ 317
           ++   +    D++    +   +L    +  YL +  +     +L  M +    T   ++Q
Sbjct: 533 KILIASGLRYDLAVKDPEYVKELVTHHVGGYLKIAPEHSETNVLSKMMKPGMGTYDTFKQ 592

Query: 318 IIDRI-RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
           + D+  R    +  +   FI   PG TD D       + + G+       + P      +
Sbjct: 593 MFDKYSREAGKEQYLIPYFIAAHPGTTDTDMMNLAIWLKRNGFRADQVQAFYPSPMATAT 652

Query: 377 NML 379
            M 
Sbjct: 653 TMY 655


>gi|302876244|ref|YP_003844877.1| Radical SAM domain-containing protein [Clostridium cellulovorans
           743B]
 gi|307686975|ref|ZP_07629421.1| Radical SAM domain-containing protein [Clostridium cellulovorans
           743B]
 gi|302579101|gb|ADL53113.1| Radical SAM domain protein [Clostridium cellulovorans 743B]
          Length = 274

 Score = 65.7 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 38/210 (18%), Positives = 76/210 (36%), Gaps = 20/210 (9%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGI-EISRSLSQVVDEA---RKLIDNGVCEITLLGQNVNAW 235
           +    GC   C +C      G    +RS+  V  E    ++L+   +  +  +     A+
Sbjct: 27  VVTSRGCPGNCIYCSATALSGATYRTRSIESVFMEIVLLKELLKGKMDLVYFIDDTFTAF 86

Query: 236 RGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPV 295
                             +SE   L       S    M+  LIK+  +       +   +
Sbjct: 87  ---------PERVLKFIDISEKNNLNVPWRCESRIDVMTGELIKSMAEGG--CRGIVYGI 135

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
           +SGS  IL  + ++      R II         + +S +F++G   +T +  + T+D + 
Sbjct: 136 ESGSQEILDKIRKKIDLNHVRNIIKYTCDT--GMKLSVNFMIGHYCDTIETMKETVDFIR 193

Query: 356 KI--GYAQAFSFKY-SPRLGTPGSNMLEQV 382
           +I   +    +  Y +P  GT      +++
Sbjct: 194 EIYENFGADIALTYNTPYPGTWQYTHRDEL 223


>gi|165871924|ref|ZP_02216566.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Bacillus anthracis str. A0488]
 gi|167635902|ref|ZP_02394210.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Bacillus anthracis str. A0442]
 gi|170687667|ref|ZP_02878883.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Bacillus anthracis str. A0465]
 gi|170708260|ref|ZP_02898705.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Bacillus anthracis str. A0389]
 gi|190566758|ref|ZP_03019675.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Bacillus anthracis Tsiankovskii-I]
 gi|227816258|ref|YP_002816267.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Bacillus anthracis str. CDC 684]
 gi|229602992|ref|YP_002865448.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Bacillus anthracis str. A0248]
 gi|301052526|ref|YP_003790737.1| coproporphyrinogen III oxidase [Bacillus anthracis CI]
 gi|164712355|gb|EDR17890.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Bacillus anthracis str. A0488]
 gi|167528719|gb|EDR91478.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Bacillus anthracis str. A0442]
 gi|170126781|gb|EDS95663.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Bacillus anthracis str. A0389]
 gi|170668480|gb|EDT19227.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Bacillus anthracis str. A0465]
 gi|190562310|gb|EDV16278.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Bacillus anthracis Tsiankovskii-I]
 gi|227006503|gb|ACP16246.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Bacillus anthracis str. CDC 684]
 gi|229267400|gb|ACQ49037.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Bacillus anthracis str. A0248]
 gi|300374695|gb|ADK03599.1| coproporphyrinogen III oxidase [Bacillus cereus biovar anthracis
           str. CI]
          Length = 495

 Score = 65.7 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 48/245 (19%), Positives = 80/245 (32%), Gaps = 9/245 (3%)

Query: 129 GPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
           G        EL E     +  ++    + D   +L++V   Y  K  V+ ++ I   C  
Sbjct: 126 GMSKEEAHQELRESYLIHEEKIELLQRIVD--CQLAVVPDLYRLKEEVSIYIGIPF-CPT 182

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT-- 246
            C +C  P         S+   +      +      +   G  V      G      T  
Sbjct: 183 KCAYCTFPAYAINGRQGSVDSFLGGLHYEVREIGKFLKEKGVTVTTIYYGGGTPTSITAE 242

Query: 247 -FSDLLYSLSEIKGLVR--LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
               L   + E    V+     T    R  +    K        +  + +  QS     L
Sbjct: 243 EMDMLYEEMYEAFPDVKNVREVTVEAGRPDTITPAKLEVLNKWNIDRISINPQSYHQETL 302

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           K++ R HT  E  +     R +  +  I+ D I+G PGE  D F+ T+D  +K+      
Sbjct: 303 KAIGRHHTVEETIEKYHLAREMGMN-NINMDLIIGLPGEGLDIFKHTLDETEKLMPESLT 361

Query: 364 SFKYS 368
               S
Sbjct: 362 VHTLS 366


>gi|72161395|ref|YP_289052.1| lipoyl synthase [Thermobifida fusca YX]
 gi|123774746|sp|Q47R88|LIPA_THEFY RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|71915127|gb|AAZ55029.1| lipoate synthase [Thermobifida fusca YX]
          Length = 312

 Score = 65.7 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 40/216 (18%), Positives = 74/216 (34%), Gaps = 18/216 (8%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC +    G   +    + +  A  +   G+   T+ G      R    DG   
Sbjct: 81  CTRRCDFCQI--ATGKPAALDRGEPLRVAESVRTMGLKYATVTGV----ARDDLDDGGAW 134

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
            +++ +  + E+     +           D L +       ++ +    V     RI K 
Sbjct: 135 LYAETVRKIHELNPGTGVELLIPDFNADPDLLAEVFSSRPEVLAHNIETV----PRIFKR 190

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           +          ++I R R     +   S+ I+G  GET ++    M  + + G       
Sbjct: 191 IRPGFRYERSLEVITRAREA--GLVTKSNLILGM-GETREEISQAMRDLYEAGCDLLTIT 247

Query: 366 KYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQ 401
           +Y  R     S +   VD  VK E  + L ++  E 
Sbjct: 248 QYL-RP----SRLHHPVDRWVKPEEFVELGREAEEI 278


>gi|229028668|ref|ZP_04184781.1| Oxygen-independent coproporphyrinogen III oxidase 2 [Bacillus
           cereus AH1271]
 gi|229095505|ref|ZP_04226493.1| Oxygen-independent coproporphyrinogen III oxidase 2 [Bacillus
           cereus Rock3-29]
 gi|228687911|gb|EEL41801.1| Oxygen-independent coproporphyrinogen III oxidase 2 [Bacillus
           cereus Rock3-29]
 gi|228732631|gb|EEL83500.1| Oxygen-independent coproporphyrinogen III oxidase 2 [Bacillus
           cereus AH1271]
          Length = 496

 Score = 65.7 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 48/245 (19%), Positives = 80/245 (32%), Gaps = 9/245 (3%)

Query: 129 GPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
           G        EL E     +  ++    + D   +L++V   Y  K  V+ ++ I   C  
Sbjct: 127 GMSKEEAHQELRESYLIHEEKIELLQRIVD--CQLAVVPDLYRLKEEVSIYIGIPF-CPT 183

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT-- 246
            C +C  P         S+   +      +      +   G  V      G      T  
Sbjct: 184 KCAYCTFPAYAINGRQGSVDSFLGGLHYEVREIGKFLKEKGVTVTTIYYGGGTPTSITAE 243

Query: 247 -FSDLLYSLSEIKGLVR--LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
               L   + E    V+     T    R  +    K        +  + +  QS     L
Sbjct: 244 EMDMLYEEMYEAFPDVKNVREVTVEAGRPDTITPAKLEVLNKWNIDRISINPQSYHQETL 303

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           K++ R HT  E  +     R +  +  I+ D I+G PGE  D F+ T+D  +K+      
Sbjct: 304 KAIGRHHTVEETIEKYHLAREMGMN-NINMDLIIGLPGEGLDIFKHTLDETEKLMPESLT 362

Query: 364 SFKYS 368
               S
Sbjct: 363 VHTLS 367


>gi|228926043|ref|ZP_04089123.1| Oxygen-independent coproporphyrinogen III oxidase 2 [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
 gi|229120505|ref|ZP_04249751.1| Oxygen-independent coproporphyrinogen III oxidase 2 [Bacillus
           cereus 95/8201]
 gi|229183196|ref|ZP_04310426.1| Oxygen-independent coproporphyrinogen III oxidase 2 [Bacillus
           cereus BGSC 6E1]
 gi|228600335|gb|EEK57925.1| Oxygen-independent coproporphyrinogen III oxidase 2 [Bacillus
           cereus BGSC 6E1]
 gi|228662921|gb|EEL18515.1| Oxygen-independent coproporphyrinogen III oxidase 2 [Bacillus
           cereus 95/8201]
 gi|228833617|gb|EEM79174.1| Oxygen-independent coproporphyrinogen III oxidase 2 [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
          Length = 496

 Score = 65.7 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 48/245 (19%), Positives = 80/245 (32%), Gaps = 9/245 (3%)

Query: 129 GPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
           G        EL E     +  ++    + D   +L++V   Y  K  V+ ++ I   C  
Sbjct: 127 GMSKEEAHQELRESYLIHEEKIELLQRIVD--CQLAVVPDLYRLKEEVSIYIGIPF-CPT 183

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT-- 246
            C +C  P         S+   +      +      +   G  V      G      T  
Sbjct: 184 KCAYCTFPAYAINGRQGSVDSFLGGLHYEVREIGKFLKEKGVTVTTIYYGGGTPTSITAE 243

Query: 247 -FSDLLYSLSEIKGLVR--LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
               L   + E    V+     T    R  +    K        +  + +  QS     L
Sbjct: 244 EMDMLYEEMYEAFPDVKNVREVTVEAGRPDTITPAKLEVLNKWNIDRISINPQSYHQETL 303

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           K++ R HT  E  +     R +  +  I+ D I+G PGE  D F+ T+D  +K+      
Sbjct: 304 KAIGRHHTVEETIEKYHLAREMGMN-NINMDLIIGLPGEGLDIFKHTLDETEKLMPESLT 362

Query: 364 SFKYS 368
               S
Sbjct: 363 VHTLS 367


>gi|329295562|ref|ZP_08252898.1| ribosomal protein S12 methylthiotransferase [Plautia stali
           symbiont]
          Length = 78

 Score = 65.7 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 15/78 (19%), Positives = 36/78 (46%), Gaps = 4/78 (5%)

Query: 395 QKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPWLQS-VVLNSKN-HNIGDI 450
            +  ++         +G+ I V+I++  +E   G+ +  +P +   V LN      +G++
Sbjct: 1   MQLQQQISAERLQEKIGREILVIIDEVDEEGAVGRSMADAPEIDVAVYLNGDRQVKVGEV 60

Query: 451 IKVRITDVKISTLYGELV 468
           ++V++       L+G  V
Sbjct: 61  VRVKVEHADEYDLWGTRV 78


>gi|302560709|ref|ZP_07313051.1| oxygen-independent coproporphyrinogen III oxidase [Streptomyces
           griseoflavus Tu4000]
 gi|302478327|gb|EFL41420.1| oxygen-independent coproporphyrinogen III oxidase [Streptomyces
           griseoflavus Tu4000]
          Length = 349

 Score = 65.7 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 53/233 (22%), Positives = 83/233 (35%), Gaps = 25/233 (10%)

Query: 186 CDKFCTFCVV-PYTRGIEI-------SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG 237
           C   C +C    YT            SR      + A  LID       +LG +    R 
Sbjct: 42  CATRCGYCDFNTYTATELRGSGGVLASRD-----NYAETLIDEVRLARKVLGDDPREVRT 96

Query: 238 KGLDGEKCTFS---DLLYSLSEIK---GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL 291
             + G   T     DL+  L  I+   GL      T+     S                +
Sbjct: 97  VFVGGGTPTLLAADDLVRMLGAIREEFGLAADAEVTTEANPESVDPAYLAALRAGGFNRI 156

Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351
              +QS    +LK ++R HT       +   R+      ++ D I G PGE+DDD+RA++
Sbjct: 157 SFGMQSARQHVLKVLDRTHTPGRPEACVAEARA-EGFAHVNLDLIYGTPGESDDDWRASL 215

Query: 352 DLVDKIGYAQAFSFKYSPRLGTPGSN--MLEQVD---ENVKAERLLCLQKKLR 399
           D     G     ++      GT  +      +V    ++V A+R L  ++ L 
Sbjct: 216 DAAIGAGPDHVSAYALIVEEGTQLARRIRRGEVPMTDDDVHADRYLIAEEMLS 268


>gi|228913554|ref|ZP_04077183.1| Oxygen-independent coproporphyrinogen III oxidase 2 [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|228846141|gb|EEM91163.1| Oxygen-independent coproporphyrinogen III oxidase 2 [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
          Length = 496

 Score = 65.7 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 48/245 (19%), Positives = 80/245 (32%), Gaps = 9/245 (3%)

Query: 129 GPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
           G        EL E     +  ++    + D   +L++V   Y  K  V+ ++ I   C  
Sbjct: 127 GMSKEEAHQELRESYLIHEEKIELLQRIVD--CQLAVVPDLYRLKEEVSIYIGIPF-CPT 183

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT-- 246
            C +C  P         S+   +      +      +   G  V      G      T  
Sbjct: 184 KCAYCTFPAYAINGRQGSVDSFLGGLHYEVREIGKFLKEKGVTVTTIYYGGGTPTSITAE 243

Query: 247 -FSDLLYSLSEIKGLVR--LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
               L   + E    V+     T    R  +    K        +  + +  QS     L
Sbjct: 244 EMDMLYEEMYEAFPDVKNVREVTVEAGRPDTITPAKLEVLNKWNIDRISINPQSYHQETL 303

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           K++ R HT  E  +     R +  +  I+ D I+G PGE  D F+ T+D  +K+      
Sbjct: 304 KAIGRHHTVEETIEKYHLAREMGMN-NINMDLIIGLPGEGLDIFKHTLDETEKLMPESLT 362

Query: 364 SFKYS 368
               S
Sbjct: 363 VHTLS 367


>gi|324324915|gb|ADY20175.1| coproporphyrinogen III oxidase [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 496

 Score = 65.7 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 48/245 (19%), Positives = 80/245 (32%), Gaps = 9/245 (3%)

Query: 129 GPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
           G        EL E     +  ++    + D   +L++V   Y  K  V+ ++ I   C  
Sbjct: 127 GMSKEEAHQELRESYLIHEEKIELLQRIVD--CQLAVVPDLYRLKEEVSIYIGIPF-CPT 183

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT-- 246
            C +C  P         S+   +      +      +   G  V      G      T  
Sbjct: 184 KCAYCTFPAYAINGRQGSVDSFLGGLHYEVREIGKFLKEKGVTVTTIYYGGGTPTSITAE 243

Query: 247 -FSDLLYSLSEIKGLVR--LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
               L   + E    V+     T    R  +    K        +  + +  QS     L
Sbjct: 244 EMDMLYEEMYEAFPDVKNVREVTVEAGRPDTITPAKLEVLNKWNIDRISINPQSYHQETL 303

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           K++ R HT  E  +     R +  +  I+ D I+G PGE  D F+ T+D  +K+      
Sbjct: 304 KAIGRHHTVEETIEKYHLAREMGMN-NINMDLIIGLPGEGLDIFKHTLDETEKLMPESLT 362

Query: 364 SFKYS 368
               S
Sbjct: 363 VHTLS 367


>gi|196037552|ref|ZP_03104863.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Bacillus cereus NVH0597-99]
 gi|196031794|gb|EDX70390.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Bacillus cereus NVH0597-99]
          Length = 495

 Score = 65.7 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 48/245 (19%), Positives = 80/245 (32%), Gaps = 9/245 (3%)

Query: 129 GPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
           G        EL E     +  ++    + D   +L++V   Y  K  V+ ++ I   C  
Sbjct: 126 GMSKEEAHQELRESYLIHEEKIELLQRIVD--CQLAVVPDLYRLKEEVSIYIGIPF-CPT 182

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT-- 246
            C +C  P         S+   +      +      +   G  V      G      T  
Sbjct: 183 KCAYCTFPAYAINGRQGSVDSFLGGLHYEVREIGKFLKEKGVTVTTIYYGGGTPTSITAE 242

Query: 247 -FSDLLYSLSEIKGLVR--LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
               L   + E    V+     T    R  +    K        +  + +  QS     L
Sbjct: 243 EMDMLYEEMYEAFPDVKNVREVTVEAGRPDTITPAKLEVLNKWNIDRISINPQSYHQETL 302

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           K++ R HT  E  +     R +  +  I+ D I+G PGE  D F+ T+D  +K+      
Sbjct: 303 KAIGRHHTVEETIEKYHLAREMGMN-NINMDLIIGLPGEGLDIFKHTLDETEKLMPESLT 361

Query: 364 SFKYS 368
               S
Sbjct: 362 VHTLS 366


>gi|196035258|ref|ZP_03102664.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Bacillus cereus W]
 gi|195992322|gb|EDX56284.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Bacillus cereus W]
          Length = 495

 Score = 65.7 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 48/245 (19%), Positives = 80/245 (32%), Gaps = 9/245 (3%)

Query: 129 GPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
           G        EL E     +  ++    + D   +L++V   Y  K  V+ ++ I   C  
Sbjct: 126 GMSKEEAHQELRESYLIHEEKIELLQRIVD--CQLAVVPDLYRLKEEVSIYIGIPF-CPT 182

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT-- 246
            C +C  P         S+   +      +      +   G  V      G      T  
Sbjct: 183 KCAYCTFPAYAINGRQGSVDSFLGGLHYEVREIGKFLKEKGVTVTTIYYGGGTPTSITAE 242

Query: 247 -FSDLLYSLSEIKGLVR--LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
               L   + E    V+     T    R  +    K        +  + +  QS     L
Sbjct: 243 EMDMLYEEMYEAFPDVKNVREVTVEAGRPDTITPAKLEVLNKWNIDRISINPQSYHQETL 302

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           K++ R HT  E  +     R +  +  I+ D I+G PGE  D F+ T+D  +K+      
Sbjct: 303 KAIGRHHTVEETIEKYHLAREMGMN-NINMDLIIGLPGEGLDIFKHTLDETEKLMPESLT 361

Query: 364 SFKYS 368
               S
Sbjct: 362 VHTLS 366


>gi|78213848|ref|YP_382627.1| Elongator protein 3/MiaB/NifB [Synechococcus sp. CC9605]
 gi|78198307|gb|ABB36072.1| Elongator protein 3/MiaB/NifB [Synechococcus sp. CC9605]
          Length = 524

 Score = 65.7 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 59/364 (16%), Positives = 122/364 (33%), Gaps = 52/364 (14%)

Query: 54  ERVNSM-DDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQA 112
           E      D A+L++++   ++    + +   +G+ +            L V + G  A +
Sbjct: 57  EVTEEEWDWAELVIISGMIVQ---KDDMAVQIGKAKQ---------RGLPVAIGGPFASS 104

Query: 113 EGEEILRRSPIVNVVV---GPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGG 169
             +       + +  +   G  T     + LER     R        +     +   D  
Sbjct: 105 TPD--APELDLADFKILDEGEITLPMFLDALERGEASGRFSAEGDKPDVTATPIPRFDLL 162

Query: 170 YNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVCEITLL 228
                   + +    GC   C FC +    G +  +++  Q+V E + L D G      L
Sbjct: 163 QLEAYDSMS-VQFSRGCPFNCEFCDIIVLYGRKPRTKTPEQLVAELQYLYDLGWRRSIFL 221

Query: 229 GQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT----TSHPRDMSDCLIKAHGDL 284
             +          G K     LL  +   +      ++     S      D +++   D 
Sbjct: 222 VDD-------NFIGNKRNAKLLLPQIRTWQEERGYPFSFATEASVDLADDDEMMRMMHDA 274

Query: 285 DVLMPYLHLPVQSGSDRILKSMNR-RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGET 343
                 + L +++  +  L++  + ++T       +DRI +    I + + FI+GF GE 
Sbjct: 275 R--FESVFLGIETPDEASLETARKVQNTRNPLDAAVDRITAN--GIRVMAGFIIGFDGEK 330

Query: 344 DDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS--NMLEQVDENVKAERLLCLQKKLREQ 401
           D      +D V               R G P +   ML+ + +     RL    + ++ +
Sbjct: 331 DGAGHRIVDFVT--------------RTGIPAAMMGMLQALPKTALWARLEREGRLIQGE 376

Query: 402 QVSF 405
             + 
Sbjct: 377 DAAK 380


>gi|170738714|ref|YP_001767369.1| radical SAM domain-containing protein [Methylobacterium sp. 4-46]
 gi|168192988|gb|ACA14935.1| Radical SAM domain protein [Methylobacterium sp. 4-46]
          Length = 543

 Score = 65.7 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 41/325 (12%), Positives = 100/325 (30%), Gaps = 29/325 (8%)

Query: 57  NSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEE 116
                AD + ++  H++          +G   +        GG  +          +   
Sbjct: 72  EDFAWADAVFVSGMHVQAP----QIRDIGERAHAAGRVAVLGGPSVSGAPEQYPDFDYLH 127

Query: 117 ILRRSPIVN-VVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRG 175
           I       + ++         P    R   G+R+  +D+         +        +R 
Sbjct: 128 IGEIGDATDELIRRLDADVARPPAQLRLETGERLGLSDFP--------APAYAQVPLRRY 179

Query: 176 VTAFLTIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVCEITLLGQNVNA 234
           +   L    GC   C FC +P   G +   ++  Q++ E   ++        +       
Sbjct: 180 LIGSLQFSSGCPYRCEFCDIPALYGRQPRLKTPEQLLAELDAIVAQPGHPAVV------Y 233

Query: 235 WRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSD----CLIKAHGDLDVLMPY 290
           +      G +    ++L  L   +         +    ++      ++    + + +   
Sbjct: 234 FVDDNFIGNRKATREMLPHLVAWQKRKGYPLQFACEATLNMAKQPEILALMREANFV--T 291

Query: 291 LHLPVQSGSDRILKSMNRRHTAY-EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           + + +++     LK +++ H A     + I  + S    + ++S  I+G   ET +    
Sbjct: 292 VFVGIETPELDALKVIDKTHNAAVPMLEGIATLNSY--GLEVTSGIILGLDTETAESEEK 349

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTP 374
            +  +D+ G              TP
Sbjct: 350 LVAFIDRSGVPVLTMNLLQALPRTP 374


>gi|49476951|ref|YP_035121.1| coproporphyrinogen III oxidase [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|118476521|ref|YP_893672.1| coproporphyrinogen III oxidase [Bacillus thuringiensis str. Al
           Hakam]
 gi|49328507|gb|AAT59153.1| coproporphyrinogen oxidase, anaerobic [Bacillus thuringiensis
           serovar konkukian str. 97-27]
 gi|118415746|gb|ABK84165.1| coproporphyrinogen III oxidase, anaerobic [Bacillus thuringiensis
           str. Al Hakam]
          Length = 498

 Score = 65.7 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 48/245 (19%), Positives = 80/245 (32%), Gaps = 9/245 (3%)

Query: 129 GPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
           G        EL E     +  ++    + D   +L++V   Y  K  V+ ++ I   C  
Sbjct: 129 GMSKEEAHQELRESYLIHEEKIELLQRIVD--CQLAVVPDLYRLKEEVSIYIGIPF-CPT 185

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT-- 246
            C +C  P         S+   +      +      +   G  V      G      T  
Sbjct: 186 KCAYCTFPAYAINGRQGSVDSFLGGLHYEVREIGKFLKEKGVTVTTIYYGGGTPTSITAE 245

Query: 247 -FSDLLYSLSEIKGLVR--LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
               L   + E    V+     T    R  +    K        +  + +  QS     L
Sbjct: 246 EMDMLYEEMYEAFPDVKNVREVTVEAGRPDTITPAKLEVLNKWNIDRISINPQSYHQETL 305

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           K++ R HT  E  +     R +  +  I+ D I+G PGE  D F+ T+D  +K+      
Sbjct: 306 KAIGRHHTVEETIEKYHLAREMGMN-NINMDLIIGLPGEGLDIFKHTLDETEKLMPESLT 364

Query: 364 SFKYS 368
               S
Sbjct: 365 VHTLS 369


>gi|49183855|ref|YP_027107.1| coproporphyrinogen III oxidase [Bacillus anthracis str. Sterne]
 gi|52144446|ref|YP_082382.1| coproporphyrinogen III oxidase [Bacillus cereus E33L]
 gi|49177782|gb|AAT53158.1| oxygen-independent coproporphyrinogen III oxidase, putative
           [Bacillus anthracis str. Sterne]
 gi|51977915|gb|AAU19465.1| coproporphyrinogen oxidase, anaerobic [Bacillus cereus E33L]
          Length = 498

 Score = 65.7 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 48/245 (19%), Positives = 80/245 (32%), Gaps = 9/245 (3%)

Query: 129 GPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
           G        EL E     +  ++    + D   +L++V   Y  K  V+ ++ I   C  
Sbjct: 129 GMSKEEAHQELRESYLIHEEKIELLQRIVD--CQLAVVPDLYRLKEEVSIYIGIPF-CPT 185

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT-- 246
            C +C  P         S+   +      +      +   G  V      G      T  
Sbjct: 186 KCAYCTFPAYAINGRQGSVDSFLGGLHYEVREIGKFLKEKGVTVTTIYYGGGTPTSITAE 245

Query: 247 -FSDLLYSLSEIKGLVR--LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
               L   + E    V+     T    R  +    K        +  + +  QS     L
Sbjct: 246 EMDMLYEEMYEAFPDVKNVREVTVEAGRPDTITPAKLEVLNKWNIDRISINPQSYHQETL 305

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           K++ R HT  E  +     R +  +  I+ D I+G PGE  D F+ T+D  +K+      
Sbjct: 306 KAIGRHHTVEETIEKYHLAREMGMN-NINMDLIIGLPGEGLDIFKHTLDETEKLMPESLT 364

Query: 364 SFKYS 368
               S
Sbjct: 365 VHTLS 369


>gi|186684032|ref|YP_001867228.1| radical SAM domain-containing protein [Nostoc punctiforme PCC
           73102]
 gi|186466484|gb|ACC82285.1| Radical SAM domain protein [Nostoc punctiforme PCC 73102]
          Length = 541

 Score = 65.7 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/206 (16%), Positives = 72/206 (34%), Gaps = 16/206 (7%)

Query: 158 DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR-SLSQVVDEARK 216
           D  E +      Y ++      +  + GC   C +CV     G ++      +VV E R+
Sbjct: 235 DYIETIWPEFNFYLQEEDFYIGVQTKRGCPHNCCYCVYTVVEGKQVRINPADEVVAEMRQ 294

Query: 217 LIDNGVCEITLL-GQNVNAWRGKGLDGEKCTFSDLLYSLSEI--KGLVRLRY-TTSHPRD 272
           L D G+        Q + A +            D +  L +I   G+  + +       +
Sbjct: 295 LYDRGIRNFWFTDAQFIPARKFID---------DAIELLQKIVDSGMTDIHWAAYIRADN 345

Query: 273 MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAIS 332
           ++  L          M Y  + + SGS  +++ M   +      Q    +++   +  +S
Sbjct: 346 LTPELCDLMAKTG--MNYFEIGITSGSQELVRKMRMGYNLRTVLQNCRDLKAAGFNDLVS 403

Query: 333 SDFIVGFPGETDDDFRATMDLVDKIG 358
            ++      E  +  R T+    ++ 
Sbjct: 404 VNYSFNVIDERPETIRQTIAYHRELE 429


>gi|91781634|ref|YP_556840.1| lipoyl synthase [Burkholderia xenovorans LB400]
 gi|91685588|gb|ABE28788.1| Lipoate synthase [Burkholderia xenovorans LB400]
          Length = 334

 Score = 65.7 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 82/220 (37%), Gaps = 10/220 (4%)

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
           + +  ++++    E  S  + G    +G   F+ + + C + C FC V + R   +    
Sbjct: 69  KQILREHNLHTVCEEASCPNIGECFGKGTATFMIMGDKCTRRCPFCDVGHGRPDPL--DA 126

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
            +  + AR +    +  + +   +    R    DG    F + +    E+    R+   T
Sbjct: 127 DEPGNLARTIAALKLKYVVITSVD----RDDLRDGGAAHFVECIRQTRELSPQTRIEILT 182

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
               D    L +A G L+   P +         R+ K            +++   +++ P
Sbjct: 183 P---DFRGRLDRALGILNAAPPDVMNHNLETVPRLYKEARPGSDYAHSLKLLKDFKALHP 239

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           D+A  S  +VG  GET+++    M  + +         +Y
Sbjct: 240 DVATKSGLMVGL-GETEEEILQVMRDLREHDVDMLTIGQY 278


>gi|331086132|ref|ZP_08335214.1| hypothetical protein HMPREF0987_01517 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330406291|gb|EGG85805.1| hypothetical protein HMPREF0987_01517 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 492

 Score = 65.7 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/235 (14%), Positives = 80/235 (34%), Gaps = 22/235 (9%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQN-----VNAWRGKGL 240
           C   C +C          S  +        + +D    EI+ +G       +N     G 
Sbjct: 163 CPTTCAYCSFT-------SYPIEAWKTRVEEYLDALCKEISYVGDISKEKKLNTIYIGGG 215

Query: 241 DGEKCTFSDLLYSLSEIKG------LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP 294
                    L   L+ ++       +  +      P  ++   ++      +  P + + 
Sbjct: 216 TPTTLEADQLDRLLTHLEETFSYEEIKEITVEAGRPDSITREKLEVLKRHKI--PRISIN 273

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
            Q+   + L  + R+HT  +  ++    R +  +  I+ D I G PGET +D + T+  +
Sbjct: 274 PQTMQQKTLDLIGRKHTVGDILRVYGMARELEFE-NINMDLIAGLPGETVEDVKDTLRQI 332

Query: 355 DKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDAC 409
           +++          + +  +  + M E  +  ++ ER   ++  +           
Sbjct: 333 EELSPDSITVHSLAVKRASRLAQMPELKEAALQEERGRQMEAMID-LAAESAARM 386


>gi|296274462|ref|YP_003657093.1| radical SAM domain-containing protein [Arcobacter nitrofigilis DSM
           7299]
 gi|296098636|gb|ADG94586.1| Radical SAM domain protein [Arcobacter nitrofigilis DSM 7299]
          Length = 486

 Score = 65.7 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 41/235 (17%), Positives = 84/235 (35%), Gaps = 22/235 (9%)

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV--PYTRGIEISRS 206
           + D D    DK+   +         R   A +    GC   CTFC +  P+ +     RS
Sbjct: 184 IADWDMLPMDKYRAHNWHCFDDIENRMPYASIYTSLGCPYKCTFCCINAPFGKSTIRYRS 243

Query: 207 LSQVVDEARKLIDN-GVCEITLLGQNV---NAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
              +V+E   L     +  I  + +          K +D       DL            
Sbjct: 244 PEIIVNELELLNTKYKIKNIKFIDEMFVLHEEHYMKIVDLIIEKNLDL------------ 291

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
             +  +    +    +K      +   +L L ++S +  +    +++    + +Q ++ I
Sbjct: 292 NIWCYARVDTIKPYTLKRMKQAGI--NWLALGIESANPNVRDGASKKMRVKDIKQQVNDI 349

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
           +SV   I +  ++I G   +T +  + T+D+  ++    A  +      G+P  N
Sbjct: 350 QSV--GIRVIGNYIFGLQDDTIESMQETLDMAKELNCEFANFYCAMAYPGSPLYN 402


>gi|210613774|ref|ZP_03289888.1| hypothetical protein CLONEX_02095 [Clostridium nexile DSM 1787]
 gi|210150983|gb|EEA81991.1| hypothetical protein CLONEX_02095 [Clostridium nexile DSM 1787]
          Length = 575

 Score = 65.7 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 51/288 (17%), Positives = 103/288 (35%), Gaps = 28/288 (9%)

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE-- 141
           L  +  L     K    + + V G     + +++L R P V  V+  +      E++E  
Sbjct: 68  LSYVEELVRELGKIFPSVPIWVGGPEVSYDTKDVLERLPEVTGVIFGEGEKTFLEVVEYY 127

Query: 142 ---------------RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGC 186
                          R   G+ + ++   V D  E   +     + K  +  + +   GC
Sbjct: 128 HGKDMQLSEIKGIAYRGEEGEFLQNSWREVMDLSEVPFVYHDMADFKNKIIYYES-SRGC 186

Query: 187 DKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT 246
              C++C+          R L  V  E +  ID  V ++  + +  N      +   K  
Sbjct: 187 PFSCSYCL-SSIDKCLRFRKLELVEKELQFFIDEEVPQVKFVDRTFNCNHKHAIAIWKYI 245

Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306
                      KG+    +  +    +++  +K    +   +  L + VQS +++ ++ +
Sbjct: 246 KEHD-------KGITNFHFEVAADL-LNEEELKLIESMRPGLIQLEIGVQSTNEQTIREI 297

Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
            R     E  +I+ RI     ++    D I G P E  + F+ + D V
Sbjct: 298 RRTMRFEEVARIVQRINQGE-NVHQHLDLIAGLPYEGMESFQKSFDDV 344


>gi|229084075|ref|ZP_04216367.1| Oxygen-independent coproporphyrinogen III oxidase 2 [Bacillus
           cereus Rock3-44]
 gi|228699224|gb|EEL51917.1| Oxygen-independent coproporphyrinogen III oxidase 2 [Bacillus
           cereus Rock3-44]
          Length = 496

 Score = 65.7 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 43/247 (17%), Positives = 85/247 (34%), Gaps = 13/247 (5%)

Query: 129 GPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
           G        EL E     +  ++    + D   +L++V   Y  K  V+ ++ I   C  
Sbjct: 127 GMSKEEAHKELRESYLIHEEKIELLQRIVD--CQLAVVPDLYRLKEEVSIYIGIPF-CPT 183

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG-------LD 241
            C +C  P         S+   +      +      +   G  V      G        +
Sbjct: 184 KCAYCTFPAYAINGRQGSVDSFLGGLHYEVREIGKFLKEKGVKVTTIYYGGGTPTSITAE 243

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
                + ++  S  ++K +  +      P  ++   ++        +  + +  QS    
Sbjct: 244 EMDMLYEEMYQSFPDVKEVREVTVEAGRPDTITPEKLEVL--NKWNIDRISINPQSYHQE 301

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
            LK++ R HT  E  +     R +  +  I+ D I+G PGE  + F+ T+D  +K+    
Sbjct: 302 TLKAIGRHHTVEETIEKYHLARQMGMN-NINMDLIIGLPGEGLEIFKHTLDETEKLMPES 360

Query: 362 AFSFKYS 368
                 S
Sbjct: 361 LTVHTLS 367


>gi|89895194|ref|YP_518681.1| coproporphyrinogen III oxidase [Desulfitobacterium hafniense Y51]
 gi|219669624|ref|YP_002460059.1| coproporphyrinogen III oxidase [Desulfitobacterium hafniense DCB-2]
 gi|89334642|dbj|BAE84237.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219539884|gb|ACL21623.1| Coproporphyrinogen dehydrogenase [Desulfitobacterium hafniense
           DCB-2]
          Length = 518

 Score = 65.7 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/216 (13%), Positives = 67/216 (31%), Gaps = 26/216 (12%)

Query: 164 SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLID---N 220
             ++   +  + V  ++ I   C   C++C  P     +    L   +    + I     
Sbjct: 179 PFLEDMKSHPQDVAVYIGIPF-CPTRCSYCSFPAYSLKQGREPLEHYLQGLGEEIRTAGA 237

Query: 221 GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDC---- 276
            +    L   ++         G        +  +  +  L+          + +      
Sbjct: 238 WMKAGGLTADSL-------YLGGGTPTILTIREMEGLIALMMTHIPHREAGEFTVEAGRP 290

Query: 277 -------LIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329
                  L+         +  L +  Q+  +R L+ + R HT  +  +  +  R   P  
Sbjct: 291 DTLSEGKLLALRASG---VNRLSVNPQTMHNRTLQRIGRAHTVEDIIKAYELARE-IPGW 346

Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
            I+ D I+G PGE   D + T++ +  +        
Sbjct: 347 VINMDLIMGLPGEGAKDIQETLERIRALEPDNLTVH 382


>gi|325662329|ref|ZP_08150938.1| hypothetical protein HMPREF0490_01677 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325471331|gb|EGC74554.1| hypothetical protein HMPREF0490_01677 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 492

 Score = 65.4 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/235 (14%), Positives = 79/235 (33%), Gaps = 22/235 (9%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQN-----VNAWRGKGL 240
           C   C +C          S  +        + +D    EI+ +G       +N     G 
Sbjct: 163 CPTTCAYCSFT-------SYPIEAWKTRVEEYLDALCKEISYVGDISKEKKLNTIYIGGG 215

Query: 241 DGEKCTFSDLLYSLSEIKG------LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP 294
                    L   L+ ++       +  +      P  ++   ++      +  P + + 
Sbjct: 216 TPTTLEADQLDRLLTHLEETFSYEEIKEITVEAGRPDSITREKLEVLKRHKI--PRISIN 273

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
            Q+   + L  + R+HT  +  ++    R +  +  I+ D I G PGET  D + T+  +
Sbjct: 274 PQTMQQKTLDLIGRKHTVEDILRVYGMARELEFE-NINMDLIAGLPGETVKDVKDTLRQI 332

Query: 355 DKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDAC 409
           +++          + +  +  + M E  +  ++ ER   ++  +           
Sbjct: 333 EELSPDSITVHSLAVKRASRLAQMPELKEAALQEERGRQMEAMID-LAAESAARM 386


>gi|168209679|ref|ZP_02635304.1| radical SAM domain protein [Clostridium perfringens B str. ATCC
           3626]
 gi|170712271|gb|EDT24453.1| radical SAM domain protein [Clostridium perfringens B str. ATCC
           3626]
          Length = 662

 Score = 65.4 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 65/399 (16%), Positives = 123/399 (30%), Gaps = 54/399 (13%)

Query: 69  TCHIREKAAE--KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNV 126
           TC+I +   E  + +  L   + + + +        +          G  +++      V
Sbjct: 200 TCYIADSLDEIYEEHIVLPSFKEVSSDKRTYAECFKIQYDEQDPVR-GRTLVQEHNGKYV 258

Query: 127 VVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGC 186
           V+         E L+R              +  +  +   DGG      V   L    GC
Sbjct: 259 VINKPEMPLSREELDRVYA--------LPYQKTYHPIYEKDGGIAAIEEVKFSLVSSRGC 310

Query: 187 DKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDNGVCEITLLGQ--------------- 230
              C+FC + + +G  + SRS   +V+EA ++      +  +                  
Sbjct: 311 SGNCSFCAITFHQGRIVTSRSEDSIVEEAEEITKYDDFKGYIHDIGGPTANFRKPACKKQ 370

Query: 231 -NVNAWR---------GKGLDGEKCTFSDLLYSLSEIKGLVR------LRYTTSHPRDMS 274
             + A +          K ++ +   +  LL  + ++ G+ +      LRY         
Sbjct: 371 LTLGACKHKRCMSPGICKNMEVDHREYLHLLRRVRKLPGIKKVFIRSGLRYDYIMADKDD 430

Query: 275 DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH--TAYEYRQIIDRIRSVRPDIA-I 331
               +       +   L +  +  S  +LK M +    T  E+R+   RI         I
Sbjct: 431 TFFKELV--EHHVSGQLKVAPEHVSPNVLKYMGKPAGKTYDEFRRKFFRITERLGKKQFI 488

Query: 332 SSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM-----LEQVDENV 386
               +   PG   +D     + +  I Y       + P  GT  + M          E V
Sbjct: 489 IPYLMSSHPGCKLEDAIMLAEYLRDINYQPEQVQDFYPTPGTLSTTMFYTGLDPLTMEEV 548

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK 425
              R    +   R      N      + + L+ K G+E 
Sbjct: 549 YIPRSKEEKAMQRALLQFKNPKNYNIVYDALV-KAGRED 586


>gi|215425418|ref|ZP_03423337.1| methyltransferase [Mycobacterium tuberculosis T92]
 gi|215433134|ref|ZP_03431053.1| methyltransferase [Mycobacterium tuberculosis EAS054]
 gi|219556012|ref|ZP_03535088.1| methyltransferase [Mycobacterium tuberculosis T17]
 gi|260199215|ref|ZP_05766706.1| methyltransferase/methylase [Mycobacterium tuberculosis T46]
 gi|289441589|ref|ZP_06431333.1| methyltransferase/methylase [Mycobacterium tuberculosis T46]
 gi|289568116|ref|ZP_06448343.1| methyltransferase/methylase [Mycobacterium tuberculosis T17]
 gi|289748689|ref|ZP_06508067.1| methyltransferase/methylase [Mycobacterium tuberculosis T92]
 gi|289756278|ref|ZP_06515656.1| methyltransferase [Mycobacterium tuberculosis EAS054]
 gi|289414508|gb|EFD11748.1| methyltransferase/methylase [Mycobacterium tuberculosis T46]
 gi|289541869|gb|EFD45518.1| methyltransferase/methylase [Mycobacterium tuberculosis T17]
 gi|289689276|gb|EFD56705.1| methyltransferase/methylase [Mycobacterium tuberculosis T92]
 gi|289696865|gb|EFD64294.1| methyltransferase [Mycobacterium tuberculosis EAS054]
          Length = 437

 Score = 65.4 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 60/323 (18%), Positives = 116/323 (35%), Gaps = 35/323 (10%)

Query: 79  KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVN-VVVGPQTY---- 133
                   +  L     +    + +V+   +A    E ILR+    + VVVG        
Sbjct: 50  SCIDTFPEVLWLAQRARQAWDGVRIVIGNAMATLNYERILRQHDCFDYVVVGDGEVAFTK 109

Query: 134 -----------YRLPELLERARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLT 181
                        +P L  R+  G+ +      V+ D+  R +  +       G  A + 
Sbjct: 110 LALALANDAAVDDVPGLARRSEQGQILRTPSSLVDLDELPRPARDELPTVLADGFAASVF 169

Query: 182 IQEGCDKFCTFC---VVPYTRGI--EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR 236
              GC   CTFC    +    G     ++S+  VVDE   L+ +       +  ++   +
Sbjct: 170 STRGCPYRCTFCGTGAMSAMLGKDSYRAKSVDAVVDEIDYLVSDYDVNFLSITDDLFISK 229

Query: 237 GKGLDGEKCTFSD-LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPV 295
             G       F++ +L     +  +V +R  +    D+   L +A       +  + + V
Sbjct: 230 HPGSQQRAADFANAVLRRGISVNFMVDIRLDSVVDLDLFKHLHRA------GLRRVFIGV 283

Query: 296 QSGSDRILKSMNRR--HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
           ++GS   L++  ++      +    I+ ++ +  D+   +  I+  P    D+ R T+ L
Sbjct: 284 ETGSYEQLRAYRKQILTRGQDAADTINALQQLGIDVIPGT--IMFHPTVQPDELRETVRL 341

Query: 354 VDKIGYAQAFSFKYS--PRLGTP 374
           +    Y   F F     P  GTP
Sbjct: 342 LRATKYTVCFKFMSRIVPYPGTP 364


>gi|148272742|ref|YP_001222303.1| coproporphyrinogen III oxidase [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|147830672|emb|CAN01608.1| oxygen-independent coproporphyrinogen III oxidase [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
          Length = 407

 Score = 65.4 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 53/275 (19%), Positives = 89/275 (32%), Gaps = 33/275 (12%)

Query: 152 TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV-----PYTRGIEISRS 206
            D +  D     S  DG   R  GV   +     C   C +C       P  RG+  S  
Sbjct: 8   ADPAPADGLLPTSAADGADARAFGVYLHVPF---CRVRCGYCDFNTYTAPELRGVRQSDY 64

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
            SQ V E R         +   G    +     L G   T    +  L  +   VR  + 
Sbjct: 65  ASQAVQEVRFA----GSSLRDSGIPARSASTVFLGGGTPTL-LPVEDLVRMLDAVRETFG 119

Query: 267 TSHPRDMSDC-------LIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
            +   +++                       +   +QS   R+L ++ R H       ++
Sbjct: 120 LAEGAEVTTEANPDSVDDAYLAALAAGGFTRVSFGMQSAVPRVLATLERTHDPARIAPVV 179

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN-- 377
              R+    + +S D I G PGET DD+RA+++           ++      GT  +   
Sbjct: 180 RGARAA--GLEVSLDLIYGTPGETIDDWRASLEQAIAQEPDHLSAYALIVEPGTKLARQI 237

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQ 412
             ++V E           + L+       D  +G+
Sbjct: 238 RRDEVPEP---------DEDLQADMYELADRMLGE 263


>gi|303238723|ref|ZP_07325256.1| Radical SAM domain protein [Acetivibrio cellulolyticus CD2]
 gi|302593842|gb|EFL63557.1| Radical SAM domain protein [Acetivibrio cellulolyticus CD2]
          Length = 582

 Score = 65.4 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 43/314 (13%), Positives = 110/314 (35%), Gaps = 31/314 (9%)

Query: 69  TCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVV 128
           +C I   A       +  +  + ++  K    + +++ G        EI+ ++  ++ ++
Sbjct: 55  SCDI--AAFSCYIWNIEYVLKIADNLKKVLPKVKIILGGPEVSFNAFEIMDKNSCIDYIL 112

Query: 129 GPQTYYRLPELLERARFGKRVVDTDYSVEDK-------------FERLSIVDGGYNRKRG 175
             +      +LL          D+  S+  +              E L+++   Y+ +  
Sbjct: 113 SGEGELTFGQLLRALINKSIEPDSIKSLTYRDGDHLVLGEEYAIIEDLNMIRSPYSEEMF 172

Query: 176 VTAFLTI-----QEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQ 230
                 I       GC   C++C+    +G     S+ +V  +    I  G+  +  + +
Sbjct: 173 YNVGNKIVYYESSRGCPFDCSYCLSSTFKG-VRYLSMERVKSDILAFIKAGIKMVKFVDR 231

Query: 231 NVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY 290
             N                +L  + +  G     +  +      + ++         +  
Sbjct: 232 TFNC--------NLERAKQILSFVIDNAGSTHFHFEAAADL-FDNEMMDILSKAPTGLIQ 282

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
             + +Q+ + + L ++NR+    E    + ++ +   ++ +  D IVG P E  + FR +
Sbjct: 283 FEIGIQTTNSKTLIAVNRKTRLNEVFFNVQKL-NRLGNVHLHLDLIVGLPYEDYESFRKS 341

Query: 351 MDLVDKIGYAQAFS 364
            + V ++G  Q   
Sbjct: 342 FNDVYELGPQQLQV 355


>gi|289192688|ref|YP_003458629.1| Radical SAM domain protein [Methanocaldococcus sp. FS406-22]
 gi|288939138|gb|ADC69893.1| Radical SAM domain protein [Methanocaldococcus sp. FS406-22]
          Length = 441

 Score = 65.4 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 53/290 (18%), Positives = 104/290 (35%), Gaps = 26/290 (8%)

Query: 80  VYSFLGRIRNLKNSRIKEGGDLLVVVAGC-------VAQAEGEEILRRSPIVNVVVGPQT 132
              +   I+ +KN R      + V    C       +A+     I+      +V++    
Sbjct: 61  ENDYFNAIKIVKNLRKTNPNAVFVAGGPCVMENFFPMAEFFDAFIVGEIENSDVMLKVIN 120

Query: 133 YYRLPELLERARFGKRVVDTDYSVEDKFERLSIV-DGGYNRKRGVTAFLTIQEGCDKFCT 191
                E +      K+ V   Y  +   E   I          G +  L I  GC + C 
Sbjct: 121 REFDVEGVYSKFLDKKKVKRIYPKKLGVEDYPIYQPTSEEGAYGKSFLLEIGRGCPRRCR 180

Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLID-NGVCEITLLGQNVNAWRGKGLDGEKCTFSDL 250
           FC+          R L  ++  A + +  N V ++ L+  +V  ++            +L
Sbjct: 181 FCLARAIYYPPRFRKLDDLMYLAEEGVKVNKVNKVALIAPSVGDYKY---------IVEL 231

Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
              L E    +++  ++     ++D L++           L +  ++GS+R+ + + +  
Sbjct: 232 CNFLDE--KDIQISPSSLRADTLNDDLMRILKP-----KTLTIAPEAGSERLREFIKKDI 284

Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
              +    ID  +    +  I   F+VG P ETD+D    ++L  KI   
Sbjct: 285 KEEDIANAIDLAKKFGVE-KIKLYFMVGIPTETDEDIEELINLTKKIKKD 333


>gi|168205442|ref|ZP_02631447.1| radical SAM domain protein [Clostridium perfringens E str. JGS1987]
 gi|170662978|gb|EDT15661.1| radical SAM domain protein [Clostridium perfringens E str. JGS1987]
          Length = 662

 Score = 65.4 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 65/399 (16%), Positives = 123/399 (30%), Gaps = 54/399 (13%)

Query: 69  TCHIREKAAE--KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNV 126
           TC+I +   E  + +  L   + + + +        +          G  +++      V
Sbjct: 200 TCYIADSLDEIYEEHIVLPSFKEVSSDKRTYAECFKIQYDEQDPVR-GRTLVQEHNGKYV 258

Query: 127 VVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGC 186
           V+         E L+R              +  +  +   DGG      V   L    GC
Sbjct: 259 VINKPEMPLSREELDRVYA--------LPYQKTYHPIYEKDGGIAAIEEVKFSLVSSRGC 310

Query: 187 DKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDNGVCEITLLGQ--------------- 230
              C+FC + + +G  + SRS   +V+EA ++      +  +                  
Sbjct: 311 SGNCSFCAITFHQGRIVTSRSEDSIVEEAEEITKYDDFKGYIHDIGGPTANFRKPACKKQ 370

Query: 231 -NVNAWR---------GKGLDGEKCTFSDLLYSLSEIKGLVR------LRYTTSHPRDMS 274
             + A +          K ++ +   +  LL  + ++ G+ +      LRY         
Sbjct: 371 LTLGACKHKRCMSPGICKNMEVDHREYLHLLRRVRKLPGIKKVFIRSGLRYDYIMADKDD 430

Query: 275 DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH--TAYEYRQIIDRIRSVRPDIA-I 331
               +       +   L +  +  S  +LK M +    T  E+R+   RI         I
Sbjct: 431 TFFKELV--EHHVSGQLKVAPEHVSPNVLKYMGKPAGKTYDEFRRKFFRITERLGKKQFI 488

Query: 332 SSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM-----LEQVDENV 386
               +   PG   +D     + +  I Y       + P  GT  + M          E V
Sbjct: 489 IPYLMSSHPGCKLEDAIMLAEYLRDINYQPEQVQDFYPTPGTLSTTMFYTGLDPLTMEEV 548

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK 425
              R    +   R      N      + + L+ K G+E 
Sbjct: 549 YIPRSKEEKAMQRALLQFKNPKNYNIVYDALV-KAGRED 586


>gi|254423616|ref|ZP_05037334.1| radical SAM domain protein [Synechococcus sp. PCC 7335]
 gi|196191105|gb|EDX86069.1| radical SAM domain protein [Synechococcus sp. PCC 7335]
          Length = 531

 Score = 65.4 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 58/344 (16%), Positives = 108/344 (31%), Gaps = 38/344 (11%)

Query: 57  NSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEE 116
           +  D A+L++ +   +++            +  +K ++ +      V V G  A A   E
Sbjct: 58  SDWDWAELVIFSGMIVQKP---------DMLAQIKEAKRRGKP---VAVGGPYATALAHE 105

Query: 117 ILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGV 176
           +       +  V  +    LP L+E    G+                 +      +    
Sbjct: 106 VTEA--GADFRVLDEGEITLPMLVEALERGETEGTFRALERPDVSTSPVPRFDLLKLDAY 163

Query: 177 TAF-LTIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVCEITLLGQNVNA 234
           +   +    GC   C FC +    G +  ++S  Q++ E   L D G      +  +   
Sbjct: 164 SEMAIQFSRGCPFQCEFCDIIVLYGRKPRTKSPEQLISELELLYDLGWRRSIFMVDD--- 220

Query: 235 WRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM----SDCLIKAHGDLDVLMPY 290
                  G K     +L +L          +T S    +       L+      +     
Sbjct: 221 ----NFIGNKRNVKLMLKALVPWMKEKGYPFTFSTEASVDLAQDQELMDLMTACN--FGA 274

Query: 291 LHLPVQSGSDRILKSMNRR-HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           + L V++  +  L    +  +      + I +I S    I + + FI+GF GE       
Sbjct: 275 VFLGVETPDEASLALTQKFQNNRDPLSESIHKIASS--GIRVMAGFIIGFDGEKKGAGDR 332

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLC 393
            +  V+K     A          T     LE      K +RLL 
Sbjct: 333 IVQFVEKCSVPTALFSMLQALPDTALWKRLE------KEDRLLA 370


>gi|325831426|ref|ZP_08164680.1| coproporphyrinogen dehydrogenase [Eggerthella sp. HGA1]
 gi|325486680|gb|EGC89128.1| coproporphyrinogen dehydrogenase [Eggerthella sp. HGA1]
          Length = 370

 Score = 65.4 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 46/236 (19%), Positives = 101/236 (42%), Gaps = 24/236 (10%)

Query: 186 CDKFCTFC-----VVPYTRGIEISRSLSQVVDEARKLIDNG----VCEITLLGQNVNAWR 236
           C K C +C      VP     EI   +  +  + R+    G    V  + L G   +   
Sbjct: 16  CVKRCAYCDFATAAVP-AGAPEIEAYVEDLSLQIRRKAKEGELGAVETVYLGGGTPSHVG 74

Query: 237 GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQ 296
             GL     T S  ++   E++  +      ++P  +++ +++    L   +  L + VQ
Sbjct: 75  LAGLSMLLYTLSLSMHLTDEVECTME-----ANPESLTERMVRDIWALG--VNRLSIGVQ 127

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
           S  D +L+++ R H++ + R+ I+  R+   ++++  D + G PG++ + F A+     +
Sbjct: 128 SFDDDVLRTLGRAHSSDDARRAIEAARTRFENVSV--DLMCGIPGQSAESFEASAREAVR 185

Query: 357 IGYAQAFSFKYSPRLGTP--GSNM---LEQVDENVKAERLLCLQKKLREQQVSFND 407
           +G      +  +    TP   + +   LE+ D++V+A  +    + L  +     +
Sbjct: 186 LGATHVSVYPLTVEPHTPFDAAVLAGELEEPDDDVEAAHMQIAARVLDSEGFERYE 241


>gi|325969588|ref|YP_004245780.1| radical SAM protein [Vulcanisaeta moutnovskia 768-28]
 gi|323708791|gb|ADY02278.1| Radical SAM domain protein [Vulcanisaeta moutnovskia 768-28]
          Length = 505

 Score = 65.4 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 63/384 (16%), Positives = 135/384 (35%), Gaps = 45/384 (11%)

Query: 50  SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEG-GDLLVVVAGC 108
           + G     S+ D D+++     +  +        +  I  +     + G  D L+V+ G 
Sbjct: 43  NNGQSITKSLKDFDVVIF---SVHYELDYPRILKMMEISGINPYSSQRGINDPLIVMGGP 99

Query: 109 VAQAEGEEILRRSPIVNV----VVGPQTYYRLPELLERARF------------GKRVVDT 152
              A  E +   + I+ +    V+ P+      E  +                GK +V  
Sbjct: 100 TLIANPEPMAPFADIILIGDAEVLIPKFMEHYMEYGKDIEEYVNLTGFYIPSLGKHIVSK 159

Query: 153 DYSVEDKFERLSIVD-------GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            ++ +  +    I D                +A L +  GC + C FC+  +        
Sbjct: 160 AFAKDLSYSIKLIHDTAIELGLSNVKSVFSHSAILEVMRGCPRGCLFCMEGFIGRPVRYA 219

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           +++ + +   +  +     I   G ++         G K     L+ +L     +  LR 
Sbjct: 220 NINSIKNIVLRDANKDKKIIN--GVSLMGLSVTDHPGFKDLMDFLVNNLGLSVSVPSLRV 277

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
            +    + +  LI     +      L +  +S S+R+ +++ +  +  +   I+  I ++
Sbjct: 278 DSLD--EDTIKLI-----VRGGQKVLTIAPES-SERLRRALGKGFSDDDIASIV--ISAM 327

Query: 326 RPDI-AISSDFIVGFPGETDDDFR---ATMDLVDKIGYAQ-AFSFKYSPRLGTPGSNMLE 380
              I  +   F+VG PGET+DD       +  + ++G         + P+  TP    L 
Sbjct: 328 NAGIDHMKLYFMVGLPGETNDDVESIINLLLRLKRLGIKYSLSVNPWIPKPHTP-LQWLP 386

Query: 381 QVDENVKAERLLCLQKKLREQQVS 404
              ++V   R+  L+      + S
Sbjct: 387 MASDDVINSRVKVLEDLRTYIEFS 410


>gi|18310178|ref|NP_562112.1| hypothetical protein CPE1196 [Clostridium perfringens str. 13]
 gi|47606306|sp|Q8XL46|Y1196_CLOPE RecName: Full=UPF0313 protein CPE1196
 gi|18144857|dbj|BAB80902.1| conserved hypothetical protein [Clostridium perfringens str. 13]
          Length = 662

 Score = 65.4 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 65/399 (16%), Positives = 123/399 (30%), Gaps = 54/399 (13%)

Query: 69  TCHIREKAAE--KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNV 126
           TC+I +   E  + +  L   + + + +        +          G  +++      V
Sbjct: 200 TCYIADSLDEIYEEHIVLPSFKEVSSDKRTYAECFKIQYDEQDPVR-GRTLVQEHNGKYV 258

Query: 127 VVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGC 186
           V+         E L+R              +  +  +   DGG      V   L    GC
Sbjct: 259 VINKPEMPLSREELDRVYA--------LPYQKTYHPIYEKDGGIAAIEEVKFSLVSSRGC 310

Query: 187 DKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDNGVCEITLLGQ--------------- 230
              C+FC + + +G  + SRS   +V+EA ++      +  +                  
Sbjct: 311 SGNCSFCAITFHQGRIVTSRSEDSIVEEAEEITKYDDFKGYIHDIGGPTANFRKPACKKQ 370

Query: 231 -NVNAWR---------GKGLDGEKCTFSDLLYSLSEIKGLVR------LRYTTSHPRDMS 274
             + A +          K ++ +   +  LL  + ++ G+ +      LRY         
Sbjct: 371 LTLGACKHKRCMSPGICKNMEVDHREYLHLLRRVRKLPGIKKVFIRSGLRYDYIMADKDD 430

Query: 275 DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH--TAYEYRQIIDRIRSVRPDIA-I 331
               +       +   L +  +  S  +LK M +    T  E+R+   RI         I
Sbjct: 431 TFFKELV--EHHVSGQLKVAPEHVSPNVLKYMGKPAGKTYDEFRRKFFRITERLGKKQFI 488

Query: 332 SSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM-----LEQVDENV 386
               +   PG   +D     + +  I Y       + P  GT  + M          E V
Sbjct: 489 IPYLMSSHPGCKLEDAIMLAEYLRDINYQPEQVQDFYPTPGTLSTTMFYTGLDPLTMEEV 548

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK 425
              R    +   R      N      + + L+ K G+E 
Sbjct: 549 YIPRSKEEKAMQRALLQFKNPKNYNIVYDALV-KAGRED 586


>gi|148262598|ref|YP_001229304.1| radical SAM domain-containing protein [Geobacter uraniireducens
           Rf4]
 gi|146396098|gb|ABQ24731.1| Radical SAM domain protein [Geobacter uraniireducens Rf4]
          Length = 501

 Score = 65.4 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 66/419 (15%), Positives = 130/419 (31%), Gaps = 74/419 (17%)

Query: 43  RMEDMFFSQGYERVNSMDDA-------------------DLIVLNTCHIREKAAEKVYSF 83
            +     + GYE      DA                   D++          A     + 
Sbjct: 31  YIAGALRAAGYEV--DYYDAMSLWHKWPEIQQRIEAFNPDVV----------ATTAYTAS 78

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILR-RSPIVNVVVGPQTYYRLPELLER 142
           +     L     K    ++ V     A    EE+L      ++ +V  +    LP LL+ 
Sbjct: 79  IVHAIELTRLAKKINPQVVTVHGNVHATFCYEEMLTAEHDTIDFIVRGEGETTLPSLLDC 138

Query: 143 ---------------ARFGKRVVDTDYSVEDKFERLS--------IVDGGYNRKRGVTAF 179
                           R G  V           + L          +     +     A 
Sbjct: 139 LNAGGDPATVPGLAFYRDGAVVATPKAPYIQDLDALPAAWDLVEWPIYSYRAKNNARLAI 198

Query: 180 LTIQEGCDKFCTFCVVPYTRG-IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK 238
           ++   GC + C+FC           +RS    V E   L      E+ +L   +  +   
Sbjct: 199 VSSSRGCQQKCSFCSQQLFWAQTWRARSADNFVAELEMLNKTYGVEVAMLADEIPTF--- 255

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
             +        ++     +K L+  R            ++  +      + ++++ V++G
Sbjct: 256 DRERWVRILDLMIERQVPVKLLMETRV---DDILRDADIMDKYRQGG--VEHIYVGVEAG 310

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           S   L    +     + +Q ID I +   DI   + F++G P +T +   AT++L     
Sbjct: 311 SQETLDLFKKDTKVEQSKQAIDIINNA--DIVSETSFVLGMPEDTPESIAATIELAKHYN 368

Query: 359 YAQAFSFKYSPRLGTPGSNMLEQVDENV--KAERLLCLQKKLRE---QQVSFNDACVGQ 412
              AF    +P      + +  Q+++ V  K  R   L + + +     V   +  +G+
Sbjct: 369 PDMAFFLAIAPWPY---AELYPQLEKYVATKDYRKYNLVEPVIKPIHMTVEDLERELGK 424


>gi|330818427|ref|YP_004362132.1| Lipoyl synthase [Burkholderia gladioli BSR3]
 gi|327370820|gb|AEA62176.1| Lipoyl synthase [Burkholderia gladioli BSR3]
          Length = 330

 Score = 65.4 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 82/220 (37%), Gaps = 10/220 (4%)

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
           + +  ++++    E  S  + G    +G   F+ + + C + C FC V + R   +    
Sbjct: 65  KTILREHNLHTVCEEASCPNIGECFGKGTATFMIMGDKCTRRCPFCDVGHGRPDPL--DP 122

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
            + V+ A+ +    +  + +   +    R    DG    F + +  + E     R+   T
Sbjct: 123 DEPVNLAKTIGALRLKYVVITSVD----RDDLRDGGAGHFVECIRHVREHSPETRIEILT 178

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
               D    L +A G L+   P +         R+ K            +++   +++ P
Sbjct: 179 P---DFRGRLDRALGILNAAPPDVMNHNLETVPRLYKEARPGSDYAHSLKLLKDFKALHP 235

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           D+A  S  +VG  GET ++    M  + +         +Y
Sbjct: 236 DVATKSGLMVGL-GETPEEILQVMRDLREHDVDMLTIGQY 274


>gi|322421185|ref|YP_004200408.1| hypothetical protein GM18_3704 [Geobacter sp. M18]
 gi|320127572|gb|ADW15132.1| conserved hypothetical protein [Geobacter sp. M18]
          Length = 317

 Score = 65.4 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/203 (16%), Positives = 59/203 (29%), Gaps = 12/203 (5%)

Query: 183 QEGCDKFCTFCVVPYTRGIEIS--RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL 240
             G    C +C        E      + + +          +     +   V   +    
Sbjct: 45  SRG-TGGCIYCDNSSFSPKETQAVIPIEEQMAAGMAYHRERLSSEKFI---VYFQKYTNT 100

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYT--TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
            G      DL         ++ +            +  L+        +   + L +QS 
Sbjct: 101 YGPAEKLEDLYRRALGHPDVLGISVGTRPDSLSPTAIELLTEIARERYVC--VELGLQSM 158

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
            D IL  +NR HT  EY   ++R+      + I +  I GFPGE    F  T  L+  + 
Sbjct: 159 DDAILSRINRGHTLAEYLDAVERLSGR--GLDICTHLIYGFPGEKRSGFLKTARLIAGLP 216

Query: 359 YAQAFSFKYSPRLGTPGSNMLEQ 381
                  +      T  + M   
Sbjct: 217 VTSVKLHQLHAIENTRLAEMYRD 239


>gi|168217842|ref|ZP_02643467.1| radical SAM domain protein [Clostridium perfringens NCTC 8239]
 gi|182380095|gb|EDT77574.1| radical SAM domain protein [Clostridium perfringens NCTC 8239]
          Length = 662

 Score = 65.4 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 65/399 (16%), Positives = 124/399 (31%), Gaps = 54/399 (13%)

Query: 69  TCHIREKAAE--KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNV 126
           TC+I +   E  + +  L   +++ + +        +          G  +++      V
Sbjct: 200 TCYIADSLDEIYEEHIVLPSFKDVSSDKRTYAECFKIQYDEQDPVR-GRTLVQEHNGKYV 258

Query: 127 VVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGC 186
           V+         E L+R              +  +  +   DGG      V   L    GC
Sbjct: 259 VINKPEMPLSREELDRVYA--------LPYQKTYHPIYEKDGGIAAIEEVKFSLVSSRGC 310

Query: 187 DKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDNGVCEITLLGQ--------------- 230
              C+FC + + +G  + SRS   +V+EA ++      +  +                  
Sbjct: 311 SGNCSFCAITFHQGRIVTSRSEDSIVEEAEEITKYDDFKGYIHDIGGPTANFRKPACKKQ 370

Query: 231 -NVNAWR---------GKGLDGEKCTFSDLLYSLSEIKGLVR------LRYTTSHPRDMS 274
             + A +          K ++ +   +  LL  + ++ G+ +      LRY         
Sbjct: 371 LTLGACKHKRCMSPGICKNMEVDHREYLHLLRRVRKLPGIKKVFIRSGLRYDYIMADKDD 430

Query: 275 DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH--TAYEYRQIIDRIRSVRPDIA-I 331
               +       +   L +  +  S  +LK M +    T  E+R+   RI         I
Sbjct: 431 TFFKELV--EHHVSGQLKVAPEHVSPNVLKYMGKPAGKTYDEFRRKFFRITERLGKKQFI 488

Query: 332 SSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM-----LEQVDENV 386
               +   PG   +D     + +  I Y       + P  GT  + M          E V
Sbjct: 489 IPYLMSSHPGCKLEDAIMLAEYLRDINYQPEQVQDFYPTPGTLSTTMFYTGLDPLTMEEV 548

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK 425
              R    +   R      N      + + L+ K G+E 
Sbjct: 549 YIPRSKEEKAMQRALLQFKNPKNYNIVYDALV-KAGRED 586


>gi|86159317|ref|YP_466102.1| cobalamin vitamin B12-binding / radical SAM protein
           [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85775828|gb|ABC82665.1| Cobalamin vitamin B12-binding / Radical SAM protein
           [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 546

 Score = 65.4 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 59/330 (17%), Positives = 103/330 (31%), Gaps = 38/330 (11%)

Query: 62  ADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRS 121
           AD ++++   ++      +   + R R L             VV G    +  E    R 
Sbjct: 85  ADAVLVSGMLVQAP---SMREVVLRARALGRRT---------VVGGAGPSSAPE----RF 128

Query: 122 PIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVE-DKFERLSIVDGGY----NRKRGV 176
           P  + V   +   RL  L+            D S E D    LS+         +  R  
Sbjct: 129 PEADHVFRGEAEGRLDLLVRALAGDVPAAPRDLSPEGDGRPDLSLARVPRFDLVDLSRYA 188

Query: 177 TAFLTIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW 235
            A L    GC   C FC +    G     ++  QVV E   L   G         +    
Sbjct: 189 NASLQYSRGCPFHCEFCDIVELFGRVPRVKTPEQVVAELDDLHGRGARGALFFVDD---- 244

Query: 236 RGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMS----DCLIKAHGDLDVLMPYL 291
                 G +   + LL  L   +      +       +       L+ A   +      +
Sbjct: 245 ---NFVGNRREVARLLPVLRAWQERHGFPFQLCTEASLDLAGAPELVSAM--VAAGFQEV 299

Query: 292 HLPVQSGSDRILKSMNRRHT-AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
            + +++ S   L    +R        + ++ +      + + + FIVGF  E  D F   
Sbjct: 300 FVGIETPSAAALAETGKRQNLRVPAARAVEELTRA--GLEVFAGFIVGFDSEGPDIFDRQ 357

Query: 351 MDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++L+  +   +A +       GT     LE
Sbjct: 358 LELISGLPIPRAMAGVLMALPGTRLWRRLE 387


>gi|109897429|ref|YP_660684.1| coproporphyrinogen III oxidase [Pseudoalteromonas atlantica T6c]
 gi|109699710|gb|ABG39630.1| coproporphyrinogen III oxidase, anaerobic [Pseudoalteromonas
           atlantica T6c]
          Length = 455

 Score = 65.4 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 43/237 (18%), Positives = 81/237 (34%), Gaps = 23/237 (9%)

Query: 186 CDKFCTFC-----VVPYTRGIEIS--RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK 238
           C   C +C     V        +     + ++  +A+      V  +   G   N     
Sbjct: 61  CHYLCYYCGCNKIVTQLQTKANVYLKHLIEEIKQQAKHFGAKAVTHLHFGGGTPNFLTDD 120

Query: 239 GL----DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP 294
            L    +  K  F     +   I+           PRDM+   I A  D+      L + 
Sbjct: 121 QLLQLMNELKTHFYFTTDAQISIE---------IDPRDMTVGRIDAMADMG--FNRLSIG 169

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           +Q    ++ K++NR  +      ++ R +  R   +++ D I G P +T + F  T++ V
Sbjct: 170 LQDTDPKVQKAINRVQSTELIASLVARAKE-RHFRSVNLDLIYGLPFQTPESFANTLEAV 228

Query: 355 DKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVG 411
             +   +   F Y+       +     VD     E+ L L     ++   F    +G
Sbjct: 229 HAMQVERVSLFSYAHLPERFAAQRKLSVDALPDTEQKLALMHLAVDKLTQFGYQFIG 285


>gi|296160374|ref|ZP_06843191.1| lipoic acid synthetase [Burkholderia sp. Ch1-1]
 gi|295889355|gb|EFG69156.1| lipoic acid synthetase [Burkholderia sp. Ch1-1]
          Length = 334

 Score = 65.4 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 81/220 (36%), Gaps = 10/220 (4%)

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
           + +  ++++    E  S  + G    +G   F+ + + C + C FC V + R   +    
Sbjct: 69  KQILREHNLHTVCEEASCPNIGECFGKGTATFMIMGDKCTRRCPFCDVGHGRPDPL--DA 126

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
            +  + AR +    +  + +   +    R    DG    F + +    E     R+   T
Sbjct: 127 DEPGNLARTIAALKLKYVVITSVD----RDDLRDGGAAHFVECIRQTREFSPETRIEILT 182

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
               D    L +A G L+   P +         R+ K            +++   +++ P
Sbjct: 183 P---DFRGRLDRALGILNAAPPDVMNHNLETVPRLYKEARPGSDYAHSLKLLKDFKALHP 239

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           D+A  S  +VG  GET+++    M  + +         +Y
Sbjct: 240 DVATKSGLMVGL-GETEEEILQVMRDLREHDVDMLTIGQY 278


>gi|169346758|ref|ZP_02630257.2| radical SAM domain protein [Clostridium perfringens C str. JGS1495]
 gi|169297110|gb|EDS79231.1| radical SAM domain protein [Clostridium perfringens C str. JGS1495]
          Length = 662

 Score = 65.4 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 65/399 (16%), Positives = 123/399 (30%), Gaps = 54/399 (13%)

Query: 69  TCHIREKAAE--KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNV 126
           TC+I +   E  + +  L   + + + +        +          G  +++      V
Sbjct: 200 TCYIADSLDEIYEEHIVLPSFKEVSSDKRTYAECFKIQYDEQDPVR-GRTLVQEHNGKYV 258

Query: 127 VVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGC 186
           V+         E L+R              +  +  +   DGG      V   L    GC
Sbjct: 259 VINKPEMPLSREELDRVYA--------LPYQKTYHPIYEKDGGIAAIEEVKFSLVSSRGC 310

Query: 187 DKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDNGVCEITLLGQ--------------- 230
              C+FC + + +G  + SRS   +V+EA ++      +  +                  
Sbjct: 311 SGNCSFCAITFHQGRIVTSRSEDSIVEEAEEITKYDDFKGYIHDIGGPTANFRKPACKKQ 370

Query: 231 -NVNAWR---------GKGLDGEKCTFSDLLYSLSEIKGLVR------LRYTTSHPRDMS 274
             + A +          K ++ +   +  LL  + ++ G+ +      LRY         
Sbjct: 371 LTLGACKHKRCMSPGICKNMEVDHREYLHLLRRVRKLPGIKKVFIRSGLRYDYIMADKDD 430

Query: 275 DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH--TAYEYRQIIDRIRSVRPDIA-I 331
               +       +   L +  +  S  +LK M +    T  E+R+   RI         I
Sbjct: 431 TFFKELV--EHHVSGQLKVAPEHVSPNVLKYMGKPAGKTYDEFRRKFFRITERLGKKQFI 488

Query: 332 SSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM-----LEQVDENV 386
               +   PG   +D     + +  I Y       + P  GT  + M          E V
Sbjct: 489 IPYLMSSHPGCKLEDAIMLAEYLRDINYQPEQVQDFYPTPGTLSTTMFYTGLDPLTMEEV 548

Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK 425
              R    +   R      N      + + L+ K G+E 
Sbjct: 549 YIPRSKEEKAMQRALLQFKNPKNYNIVYDALV-KAGRED 586


>gi|33866180|ref|NP_897739.1| oxygen independent coproporphyrinogen III oxidase [Synechococcus
           sp. WH 8102]
 gi|33639155|emb|CAE08161.1| possible oxygen independent coproporphyrinogen III oxidase
           [Synechococcus sp. WH 8102]
          Length = 407

 Score = 65.4 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 49/241 (20%), Positives = 80/241 (33%), Gaps = 28/241 (11%)

Query: 173 KRGVTAFLTIQEGCDKFCTFC---VVPY-----TRGIEISRSLSQVVDEARKLIDNGVCE 224
               +A+L I   C + C +C   VVP       R    SRS+   +    + I +    
Sbjct: 5   PPPRSAYLHIPF-CHRRCYYCDFAVVPLGDRVDAREGPGSRSIEDYLRLLHREIASAA-- 61

Query: 225 ITLLGQNVNAWRGKGLDGEKCTF-----SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIK 279
               G  ++     G  G          ++LL +L    GL      T      S    +
Sbjct: 62  ---SGPPLSTVYIGG--GTPSLLTADQIAELLAALRRQFGLQPGAEITLEMDPASFDQAQ 116

Query: 280 AHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS---DFI 336
               L   +  + L  QS  D +L  + RRH   +  +    + +   D  + S   D I
Sbjct: 117 LVAVLAAGVNRISLGGQSFDDAVLIDLGRRHRRADLLEACRWMHAAHQDGDLQSWSLDLI 176

Query: 337 VGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE----QVDENVKAERLL 392
              PG+T + +   +D            +  S   GT  +   E     + E   A RL+
Sbjct: 177 QNLPGQTFEHWDDQLDQAIGSQAPHLSVYDLSVEPGTVFARRAERAELDLPEEDLAVRLM 236

Query: 393 C 393
            
Sbjct: 237 A 237


>gi|85813663|emb|CAG38716.1| putative Fe-S oxidoreductase [Streptomyces lividus]
          Length = 458

 Score = 65.4 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/202 (18%), Positives = 77/202 (38%), Gaps = 18/202 (8%)

Query: 185 GCDKFCT-FCVVPYTRGI-EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG 242
           GC   C  +C  P + G    +  + ++V E R+  + G+          +  RG+ L  
Sbjct: 204 GCPYPCRFYCPYPLSEGRKIRTYPVERIVAEFRQCAELGITAAVFRDPVFSFHRGRTL-- 261

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
                 +L  ++ E  G     +  +    + + ++ A   +      + + V+SG   +
Sbjct: 262 ------ELCRAI-EAAGTHVPWWCETRIDRLDEEVVAAL--VAAGCVGVEVGVESGDPEM 312

Query: 303 L-KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY-- 359
             K++ +R      R+     R +  ++ +   F+VG P ET    R T D + ++G   
Sbjct: 313 QAKAVRKRLDLDAVRRFHALAREM--NLELVFLFLVGLPDETRMSIRRTFDFILELGLAD 370

Query: 360 AQAFSFKYSPRLGTPGSNMLEQ 381
            +      +P  GT    +   
Sbjct: 371 TEFNLSIITPYPGTELHRIARD 392


>gi|332297279|ref|YP_004439201.1| Radical SAM domain protein [Treponema brennaborense DSM 12168]
 gi|332180382|gb|AEE16070.1| Radical SAM domain protein [Treponema brennaborense DSM 12168]
          Length = 611

 Score = 65.4 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 51/342 (14%), Positives = 96/342 (28%), Gaps = 59/342 (17%)

Query: 92  NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVV---GPQTYYRLPELLERARFGKR 148
               K    +++ V G       E +L     V+ V+   G  T   +  LL R +  + 
Sbjct: 83  AELPKIVPGVIIGVGGPEVSYCAESLLPLHRSVDFVMSGEGENTVLDVCRLLVRCKASRM 142

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTA------------------------------ 178
             D   S  +   +  ++   +  + GV +                              
Sbjct: 143 RSDLRRSFLEALVKQPVIGTFFRSESGVVSGGERSVIGDLALIPFPYRSADGSLSADVDP 202

Query: 179 -----FLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVN 233
                +     GC   C++C+            L +V  + +  +D G   +    +  N
Sbjct: 203 DHRIIYYESSRGCPFRCSYCL-SSIDKSVRFAPLERVFADLQFFLDAGCRLVKFTDRTFN 261

Query: 234 AWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHL 293
                 LD ++   +   Y +    G     +  +  + +SD  ++    +        +
Sbjct: 262 ------LDEQRY-LAIWQYIIDHHNGKTVFHFEIA-AQHLSDAALRLLRLVPDGAMQFEI 313

Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
            +QS     L    R        ++   IR +   I +  D I G P E    F  + D 
Sbjct: 314 GIQSIHPETLAQAGRPCDPE---RLAAVIRRIPRQIHVHLDLIAGLPYENFAQFSRSFDY 370

Query: 354 VDKIGYAQAFSFKYSPRLGT---------PGSNMLEQVDENV 386
              +              GT         PG   L      V
Sbjct: 371 TAALKPDMIQLGFLKILSGTAMETFAKRQPGYEWLSSAPYEV 412


>gi|109899736|ref|YP_662991.1| radical SAM-like [Pseudoalteromonas atlantica T6c]
 gi|109702017|gb|ABG41937.1| Radical SAM-like protein [Pseudoalteromonas atlantica T6c]
          Length = 784

 Score = 65.4 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 57/397 (14%), Positives = 122/397 (30%), Gaps = 60/397 (15%)

Query: 70  CHIREKAAEKVYSFLGRIRNL-------KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSP 122
           C +  +A ++      + + +       K  R K      V++         +       
Sbjct: 275 CAVSSEADKQAAIEEQKAQPIVVQPFTSKTKRRKPWDKTYVMLPAYDVVRAEK---THYA 331

Query: 123 IVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVE--DKFERLSIVDGGYNRKRGVT--- 177
             + ++  +T       L + R G R++  +      +  E  ++ D  Y R    +   
Sbjct: 332 HTSRILHKETNPGCARALAQ-RHGDRIIWINPPAYPLETEEMDAVFDLPYARVPHPSYGK 390

Query: 178 ----------AFLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDN--GVCE 224
                       + I  GC   CTFC +    G  I SRS   ++ E  ++ D   G   
Sbjct: 391 AKIPAYDMIKTSVNIMRGCFGGCTFCSITEHEGRVIQSRSEESIIREIEQIRDKVPGFTG 450

Query: 225 IT--LLGQNVNAWR----------------------GKGLDGEKCTFSDLLYSLSEIKGL 260
           +   L G   N ++                         LD ++    +L      ++G+
Sbjct: 451 VISDLGGPTANMYKLRCKSPKAEQACRRLSCVWPEICGHLDTDQTPTVELYRKARNVEGV 510

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRR--HTAYEYR 316
            ++   +    D++        +L    +  YL +  +      L  M +    T   ++
Sbjct: 511 KKVLIASGVRYDLAIEDPNYVRELVTHHVGGYLKIAPEHTEKAPLDKMMKPGMGTYDRFK 570

Query: 317 QIIDRIR-SVRPDIAISSDFIVGFPGETDDDFRATMDLVDK--IGYAQAFSFKYSPRLGT 373
           ++ D+       +  +   FI   PG  D+D       + +      Q  +F  SP    
Sbjct: 571 ELFDKYTMEAGKEQYLIPYFISAHPGTEDEDMLNLALWLKERNFKLDQVQNFYPSPMANA 630

Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACV 410
                  +   +    +   +     E +   + A +
Sbjct: 631 TTMYHTGKNPIHKVNHKSEAVTVAKGEIRRRLHRAFL 667


>gi|149181386|ref|ZP_01859883.1| Mg-protoporphyrin IX monomethyl ester oxidative cyclase [Bacillus
           sp. SG-1]
 gi|148850949|gb|EDL65102.1| Mg-protoporphyrin IX monomethyl ester oxidative cyclase [Bacillus
           sp. SG-1]
          Length = 585

 Score = 65.4 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 60/332 (18%), Positives = 110/332 (33%), Gaps = 38/332 (11%)

Query: 60  DDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILR 119
             AD+I   +C+I       +   +  ++ LK    K   + +++  G     +    L 
Sbjct: 54  KKADVIGF-SCYIWN-----IEETISVVKMLK----KISPETVIIFGGPEVSYDVPYWLE 103

Query: 120 RSPIVNVVVGPQTYYRLPELLERA---------------RFGKRVVDTDYSVEDKFERLS 164
           R P V+  V  +       LL++                + GK  ++   +  D  E  S
Sbjct: 104 RLPEVDFFVIGEGEETFKSLLQQIYGGQNWDEVNGIGYLKEGKVKINPQRNKLDLRELPS 163

Query: 165 IVDGGYNRKR--GVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGV 222
                 + K       ++    GC   C FC+     G        +V D+ R L+ NG 
Sbjct: 164 PFRFEEDLKSLSKRVTYIETSRGCPFRCQFCLSSIEVG-VRYFDREKVKDDIRFLMANGA 222

Query: 223 CEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAH- 281
             I  + +  N  R   ++  +    + L       G V     T+    M   +I    
Sbjct: 223 KTIKFVDRTFNISRSYAMEMFRFLIDEHL------PGTVFQFEITADI--MRPEVIDFLN 274

Query: 282 GDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPG 341
            +    +    + VQS +D     + R+    +  + +  ++  +  I    D I G P 
Sbjct: 275 KEAPAGLFRFEIGVQSTNDETNDLVMRKQNFSKLTRTVTMVKDGQ-KIDQHLDLIAGLPE 333

Query: 342 ETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
           E    FR T + V  +   +          GT
Sbjct: 334 EDYQSFRKTFNDVFALRPEELQLGFLKMLRGT 365


>gi|110803086|ref|YP_698538.1| hypothetical protein CPR_1216 [Clostridium perfringens SM101]
 gi|123341828|sp|Q0STL9|Y1216_CLOPS RecName: Full=UPF0313 protein CPR_1216
 gi|110683587|gb|ABG86957.1| radical SAM domain protein [Clostridium perfringens SM101]
          Length = 662

 Score = 65.4 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 64/399 (16%), Positives = 126/399 (31%), Gaps = 54/399 (13%)

Query: 69  TCHIREKAAE--KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNV 126
           TC+I +   E  + +  L   +++ + +        +          G  +++      V
Sbjct: 200 TCYIADSLDEIYEEHIVLPSFKDVSSDKRTYAECFKIQYDEQDPVR-GRTLVQEHNGKYV 258

Query: 127 VVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGC 186
           V+         E L+R              +  +  +   DGG      V   L    GC
Sbjct: 259 VINKPEMPLSREELDRVYA--------LPYQKTYHPIYEKDGGIAAIEEVKFSLVSSRGC 310

Query: 187 DKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDNGVCEITLLGQ--------------- 230
              C+FC + + +G  + SRS   +V+EA ++      +  +                  
Sbjct: 311 SGNCSFCAITFHQGRIVTSRSEDSIVEEAEEITKYDDFKGYIHDIGGPTANFRKPACKKQ 370

Query: 231 -NVNAWR---------GKGLDGEKCTFSDLLYSLSEIKGLVR------LRYTTSHPRDMS 274
             + A +          K ++ +   +  LL  + ++ G+ +      LRY         
Sbjct: 371 LTLGACKHKRCMSPGICKNMEVDHREYLHLLRRVRKLPGIKKVFIRSGLRYDYIMADKDD 430

Query: 275 DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH--TAYEYRQIIDRIRSVRPDIA-I 331
               +       +   L +  +  S  +LK M +    T  E+R+   +I         I
Sbjct: 431 TFFKELV--EHHVSGQLKVAPEHVSPNVLKYMGKPAGKTYDEFRRKFFKITERLGKKQFI 488

Query: 332 SSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM-LEQVDENVKAE- 389
               +   PG   +D     + +  I Y       + P  GT  + M   ++D     E 
Sbjct: 489 IPYLMSSHPGCKLEDAIMLAEYLRDINYQPEQVQDFYPTPGTLSTTMFYTELDPLTMEEV 548

Query: 390 ---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK 425
              R    +   R      N      + + L+ K G+E 
Sbjct: 549 YIPRSKEEKAMQRALLQFKNPKNYNIVYDALV-KAGRED 586


>gi|296133827|ref|YP_003641074.1| Radical SAM domain protein [Thermincola sp. JR]
 gi|296032405|gb|ADG83173.1| Radical SAM domain protein [Thermincola potens JR]
          Length = 445

 Score = 65.4 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 60/292 (20%), Positives = 97/292 (33%), Gaps = 40/292 (13%)

Query: 93  SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG------ 146
           +   EG D  + + G       EEI+   P ++ VV  +  +   EL +    G      
Sbjct: 82  ALKSEGLDTHITIGGIYPTFCYEEIMHMFPAIDSVVLGEGEHTFVELAKTVLHGRDWRKI 141

Query: 147 ---------KRVVDTDYSVEDKFERLSIV---DGGYNRKRGVTAFLTIQEGCDKFCTFC- 193
                    K V +   ++    + L            KR   A +    GC   C+FC 
Sbjct: 142 RGIAYRENDKIVTNEPRALIKDLDSLPFPARDSLPEVLKRLGFATMLSSRGCYGRCSFCS 201

Query: 194 VVPY---TRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFSD 249
           V+P+          RS   V++E   L +  GV  I     N    +G G    +    +
Sbjct: 202 VIPFYSKFGPKYRLRSSENVMEEIDVLYNEYGVRNIEFNDANFVGGKGHGFHRAREIAEE 261

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
           +L         + LR +     D  D  + A      L   + L V+SGS  +L    + 
Sbjct: 262 ILKR------NLDLRLSIQCRPDDVDEELFAILKRAGLSK-VFLGVESGSQTMLDRFKKD 314

Query: 310 HTAYEYRQIIDRIRS----VRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
            T  E  + ++ +      V        D I      T  +FR  M  + K 
Sbjct: 315 ITVEENIKALEILGRLDFIVIMGFITFDDRI------TIREFRENMAFIKKA 360


>gi|220906268|ref|YP_002481579.1| Radical SAM domain-containing protein [Cyanothece sp. PCC 7425]
 gi|219862879|gb|ACL43218.1| Radical SAM domain protein [Cyanothece sp. PCC 7425]
          Length = 527

 Score = 65.4 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 41/301 (13%), Positives = 99/301 (32%), Gaps = 28/301 (9%)

Query: 79  KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVV---------- 128
           +++  L  I+       +    +  +V G       E++ +  P   ++           
Sbjct: 123 ELWRNLSLIKQGLRRAQRYTPQVTTIVGGGAVSVFYEQVGKSLPAGTIISVGEGEMLLTK 182

Query: 129 ---GPQTYYRLPELLERARFGKRVVDTDYSVEDK-------FERLSIVDGGYNRKRGVTA 178
              G +       ++  +   +R++    +  +K        E++      Y ++     
Sbjct: 183 LLRGEEFRNERCYVVGESDPRERLIHEWPTPFEKTACNYRYIEQIWPELEYYLQENDFYV 242

Query: 179 FLTIQEGCDKFCTFCVVPYTRGIEISR-SLSQVVDEARKLIDNGVCEITLLGQNVNAWRG 237
            +  + GC   C +CV     G ++      +VV E R+L D G+             R 
Sbjct: 243 GVQTKRGCPHNCCYCVYTVVEGKQVRINPAEEVVAEMRQLYDRGIRNFWFTDAQFIPARK 302

Query: 238 KGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQS 297
              D E     +LL ++                 +++  L +        M Y  + + S
Sbjct: 303 FIADAE-----ELLETILAAGMTDIHWAAYIRADNLTPRLCELMVKTG--MNYFEIGITS 355

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
           GS  +++ M   +      +    +++   +  +S ++      ET +  R T+    ++
Sbjct: 356 GSQELVRKMRMGYNLRTVLENCRDLKAAGFNDLVSVNYSFNVIDETIETIRQTIAYHREL 415

Query: 358 G 358
            
Sbjct: 416 E 416


>gi|285808509|gb|ADC36032.1| radical SAM family Fe-S protein [uncultured bacterium 270]
          Length = 529

 Score = 65.4 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 48/278 (17%), Positives = 88/278 (31%), Gaps = 43/278 (15%)

Query: 129 GPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
           GP+   R PE        + V+    S  D  +R + V  GY         +    GC  
Sbjct: 151 GPEGVVRNPE--------RPVMPLASSSLDLPDRDARVLSGYTLLGRAVDVVETSRGCTY 202

Query: 189 FCTFCVVPYTRGIEIS-RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTF 247
            C+FC +   RG         +V+ +      +G   I L+  N+              F
Sbjct: 203 DCSFCSIIEMRGRNFHPYPFDRVLADIADAKAHGARSIFLVDDNIT--------LNVARF 254

Query: 248 SDLLYSL-----SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
             L  ++      +I   V+   +           +           Y+ L +++  D  
Sbjct: 255 EALCQAIIDAGFDDIDYTVQAMTSPIAQHGARLAPLMKRAG----FRYVFLGIENVMDGD 310

Query: 303 LKSMNRR---HTAYEYRQI-------IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352
           L+ +            R +       I  + +    + +    IVG P +T     A ++
Sbjct: 311 LEFLRAGSKNTQREGGRTVGNASIAAIQHLHAN--GMYVVGGLIVGNPDDTKSSIDANLE 368

Query: 353 LVDKIGYAQAFSFKYSPRLGTPGSNMLEQ----VDENV 386
              +      +    +P  GTP +   E     VD++V
Sbjct: 369 FARRY-VDWPYIQHPTPYPGTPMTRDFEDRGLIVDQDV 405


>gi|222099306|ref|YP_002533874.1| Radical SAM N-terminal domain protein [Thermotoga neapolitana DSM
           4359]
 gi|254801654|sp|B9KBW2|Y332_THENN RecName: Full=UPF0313 protein CTN_0332
 gi|221571696|gb|ACM22508.1| Radical SAM N-terminal domain protein [Thermotoga neapolitana DSM
           4359]
          Length = 567

 Score = 65.4 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 55/281 (19%), Positives = 93/281 (33%), Gaps = 54/281 (19%)

Query: 184 EGCDKFCTFCVVPYTRGIEIS-RSLSQVVDEARKLIDNGVCEITLL--GQNVNAWRGKGL 240
            GC   C+FC +   +   +S RS   +++E R L      + T+   G       G   
Sbjct: 301 RGCFGSCSFCALTQHQTTHVSYRSKDSILEEVRILTKKKDFKGTITDVGGPTANLYGSSC 360

Query: 241 DGEKCT----------------------FSDLLYSLSEIKGLVRLRYTTSHPRDM---SD 275
              +                        F  LL S+ +I G+  +  ++    D      
Sbjct: 361 SIRETKGQCQKFCLYPSVCKIVRPNHDEFISLLESIRKIPGVRNVFVSSGIRHDFVLAEK 420

Query: 276 CLIKAHGDLDVLMP-YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAIS-- 332
                  +L    P  L L  +    ++L  M +      + +   R  ++   +     
Sbjct: 421 DPDVFIRELVKYTPGQLKLAPEHAHPKVLSLMRKP-PVELFLEFKKRFETLAKKMGKRKY 479

Query: 333 --SDFIVGFPGETDDDFRATMDLV-DKIGYAQAFSFKYSPRLGTPGSNML-----EQVDE 384
               FIVG PGE   +     D +   +GY       ++P  GT  + M          E
Sbjct: 480 VIGYFIVGHPGEGWRENNYLRDFILKHLGYFPQQIQIFTPTPGTVSTAMYYSGLDPFTGE 539

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK 425
            V  ER L ++ K++E               VL +K G+EK
Sbjct: 540 KVHVERSLKVRNKMKEN--------------VLFKKKGREK 566


>gi|153853552|ref|ZP_01994932.1| hypothetical protein DORLON_00921 [Dorea longicatena DSM 13814]
 gi|149753707|gb|EDM63638.1| hypothetical protein DORLON_00921 [Dorea longicatena DSM 13814]
          Length = 608

 Score = 65.4 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/232 (14%), Positives = 77/232 (33%), Gaps = 10/232 (4%)

Query: 131 QTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190
               +  + +      ++++D  +        +  V            +     GC   C
Sbjct: 167 DNQLKGVDGITFREEKEKIIDNPWRPIMDLSEVPFVYDHMEDFEHKIIYYETSRGCPFSC 226

Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDL 250
           ++C+          R +  V  E +  +D+ V ++  + +  N      +   K      
Sbjct: 227 SYCL-SSVDKRLRFRDIELVKKELQFFLDHKVPQVKFVDRTFNCKHDHSIAIWKYIMEHD 285

Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
                   G+    +  +      + L         L+  L + VQS + + +K ++R  
Sbjct: 286 -------NGITNFHFEIAADILNEEELELLEQMRPGLV-QLEIGVQSTNPKTIKEIHRVM 337

Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
              +  +I+ RI++   ++    D I G P E  + F  + D V  +   Q 
Sbjct: 338 DFEKVSKIVRRIQNKV-NVHEHLDLIAGLPYEDVESFAHSFDDVYALKPEQL 388


>gi|146305687|ref|YP_001186152.1| hypothetical protein Pmen_0652 [Pseudomonas mendocina ymp]
 gi|145573888|gb|ABP83420.1| Radical SAM N-terminal domain protein [Pseudomonas mendocina ymp]
          Length = 763

 Score = 65.4 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 52/331 (15%), Positives = 107/331 (32%), Gaps = 49/331 (14%)

Query: 117 ILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGY---NRK 173
           ++++   V+V   P       E            + DY     + R+     G       
Sbjct: 325 LVQKHGEVDVWFNPPPIPMTTE------------EMDYVFGMPYARVPHPAYGKEKIPAY 372

Query: 174 RGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDN--GVCEIT--LL 228
             +   + I  GC   CTFC +    G  I +RS   ++ E  ++ D   G   +   L 
Sbjct: 373 EMIRFSVNIMRGCFGGCTFCSITEHEGRIIQNRSHESIIREIEEMRDKVPGFTGVVSDLG 432

Query: 229 GQNVNAWR----------------------GKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
           G   N +R                       + L+ +  +  +L      + G+ ++   
Sbjct: 433 GPTANMYRIACKDPEIEKHCRKPSCVFPGICENLNTDHSSLIELYRKARALPGVKKILIA 492

Query: 267 TSHPRDMSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRRH--TAYEYRQIIDRI 322
           +    D++    +   +L    +  YL +  +      L  M +    +   ++Q+ ++ 
Sbjct: 493 SGLRYDLAVESPEYVKELVTHHVGGYLKIAPEHTERGPLDKMMKPGIDSYDRFKQMFEKY 552

Query: 323 -RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY--AQAFSFKYSPRLGTPGSNML 379
            +    +  +   FI   PG TD+D       + + G+   Q  +F  SP          
Sbjct: 553 SKEAGKEQYLIPYFIAAHPGTTDEDMMNLALWLKRNGFRADQVQAFYPSPMATATAMYHS 612

Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACV 410
            +        +   +     EQQ   + A +
Sbjct: 613 GKNPLRKVTYKSDGVTIVKSEQQRRLHKAFL 643


>gi|95931230|ref|ZP_01313950.1| Radical SAM [Desulfuromonas acetoxidans DSM 684]
 gi|95132708|gb|EAT14387.1| Radical SAM [Desulfuromonas acetoxidans DSM 684]
          Length = 622

 Score = 65.4 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 54/257 (21%), Positives = 91/257 (35%), Gaps = 51/257 (19%)

Query: 167 DGGYNRKRGVTAFLTI------QEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARK-LI 218
              ++ ++ + AF  I        GC   C FC +   +G  + SRS S VV+E R+   
Sbjct: 283 RPHFSYRQSIPAFEQIRWSVTSHRGCQGGCAFCAIARHQGRRVQSRSQSSVVEEVRQLSC 342

Query: 219 DNGVC-EITLLGQNVNAWRGKGL-DGEKCTFSDLLYSL---------------------- 254
           D      IT +G       G  + DG KC     +  L                      
Sbjct: 343 DEDFRGTITDVGGPTANMYGIEVEDGGKCARCQRISCLFPQICSNLQVRNGRAARLLRRV 402

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP------VQSGSDRILKSMNR 308
            EIKG+  +         +   L++  GD    +   H+        ++ SD +LK M +
Sbjct: 403 REIKGVKHVFV----ASGVRYDLLEQQGDYLKGLLEHHVGGLLKVAPEALSDPLLKVMRK 458

Query: 309 RHTAYEYRQIIDRIRS------VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
              A  + + ++  R+       R  I      + G PG T +D   T   + +      
Sbjct: 459 PA-AQAFGRFVEAFRADSRRRGKRRGIVPY--LMAGHPGSTLNDMIDTALFLKRYHLRVE 515

Query: 363 FSFKYSPRLGTPGSNML 379
              +++P  GT  + M 
Sbjct: 516 QVQEFTPTPGTLATCMY 532


>gi|313905058|ref|ZP_07838428.1| oxygen-independent coproporphyrinogen III oxidase [Eubacterium
           cellulosolvens 6]
 gi|313470128|gb|EFR65460.1| oxygen-independent coproporphyrinogen III oxidase [Eubacterium
           cellulosolvens 6]
          Length = 404

 Score = 65.4 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 36/239 (15%), Positives = 76/239 (31%), Gaps = 30/239 (12%)

Query: 186 CDKFCTFC---VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG 242
           C K C +C     P    ++ S  +  ++ + R+        + +    +    G     
Sbjct: 13  CVKKCGYCDFLSFPAGVDVQRSY-VDALLRQIRQYGKKRGQRLPVSTVFIGG--GTPSVP 69

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
           E     ++L ++ E+  +      +      +    K     +  +  L +  QS  D  
Sbjct: 70  EPELLGEILEAVREVFDVRADAEISMESNPGTLTAEKLAAYRNFGINRLSIGCQSMDDAE 129

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           LK + R HT  ++       R    D  I+ D +   PG+T + +   + L   +     
Sbjct: 130 LKRLGRIHTREDFLDSFRMAREAGFD-NINIDLMSALPGQTAESWERGLALACSLKPEHI 188

Query: 363 FSFKYSPRLGTP------------GSNML-----------EQVDENVKAERLLCLQKKL 398
            ++      GTP               M            EQ+ +     R+    +++
Sbjct: 189 SAYSLIIEEGTPFFDRYREQEEILARGMDFSGGGQEIPEGEQLPDEETERRMYRRTEEI 247


>gi|87301775|ref|ZP_01084609.1| hypothetical protein WH5701_00580 [Synechococcus sp. WH 5701]
 gi|87283343|gb|EAQ75298.1| hypothetical protein WH5701_00580 [Synechococcus sp. WH 5701]
          Length = 534

 Score = 65.4 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 57/321 (17%), Positives = 111/321 (34%), Gaps = 35/321 (10%)

Query: 62  ADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGE--EILR 119
           A+L++++   +++           +I   K         L V V G  A +  +  EI  
Sbjct: 66  AELVIISGMIVQKA------DMAAQIAKAKQ------RGLPVAVGGPFASSTPDAPEIAL 113

Query: 120 RSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAF 179
               V +  G  T     E LER     R        +     +   D          + 
Sbjct: 114 ADFKV-LDEGEITLPMFIEALERGEQQGRFSSEGVKPDVTGTPIPRFDLLELDAYDSMS- 171

Query: 180 LTIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNG-VCEITLLGQNVNAWRG 237
           +    GC   C FC +    G +  +++  Q++ E + L D G    I L+  N      
Sbjct: 172 VQFSRGCPFQCEFCDIIVLYGRKPRTKTPEQLIAELQYLYDLGWRRSIFLVDDNFI---- 227

Query: 238 KGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM----SDCLIKAHGDLDVLMPYLHL 293
               G K     LL +L + +      ++ +    +     + ++    +       + L
Sbjct: 228 ----GNKRNAKLLLPALKQWQIDHGYPFSFATEASVDLASDEEMMLMMAESR--FDSVFL 281

Query: 294 PVQSGSDRILKSMNR-RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352
            +++  +  L++  + ++T     + +DRI S    I + + FI+GF GE        ++
Sbjct: 282 GIETPDEASLETARKLQNTRSSLEESVDRITSY--GIRVMAGFIIGFDGEKSGAGNRIVE 339

Query: 353 LVDKIGYAQAFSFKYSPRLGT 373
            V + G   A          T
Sbjct: 340 FVTRTGIPAAMMGMLQALPNT 360


>gi|302876110|ref|YP_003844743.1| Radical SAM domain-containing protein [Clostridium cellulovorans
           743B]
 gi|307686836|ref|ZP_07629282.1| Radical SAM domain-containing protein [Clostridium cellulovorans
           743B]
 gi|302578967|gb|ADL52979.1| Radical SAM domain protein [Clostridium cellulovorans 743B]
          Length = 449

 Score = 65.4 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 54/331 (16%), Positives = 108/331 (32%), Gaps = 35/331 (10%)

Query: 54  ERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAE 113
           E +N  D+ DL+ +          E   +   R   + +S  K G  + V + G  A + 
Sbjct: 52  EEINLNDEPDLVCI----------ESYITNAYRAYEIADSYRKRG--IKVAIGGLHATSL 99

Query: 114 GEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRK 173
            EE    +  + + +G  ++ +  +  +     +     + S+++    L   D     K
Sbjct: 100 PEEAKNHADTILLGLGENSFPKFLKDFKDGNCKEFYQQGEVSLDNLP--LPRRDLFKQEK 157

Query: 174 RGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS---RSLSQVVDEARKLIDNGVCEITLLGQ 230
             V   +    GC   C+FC V        S     + +V++E   +       +  L  
Sbjct: 158 YLVPNSMVFSRGCPNKCSFCYVSSFYKGGKSFFAYKVDRVLEEIESM---KGKHLYFLDD 214

Query: 231 NVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY 290
           N+ A         K     +   +  +    +   T           +            
Sbjct: 215 NIFA--------NKKLSRQIFKEMRGMNKYFQGAITVDSILQDDTIELAYEAG----FRS 262

Query: 291 LHLPVQSGSDRILKSMNRRHTA-YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
             +  +S + + L   N+      +Y   I R+  +   I I+  FI G   +  D F  
Sbjct: 263 AFIGFESINKQNLIQANKGSNIGKDYIAAIKRLDRL--GIMINGSFIFGLDDDNLDVFDR 320

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           T +     G   A +   +P  GT   + ++
Sbjct: 321 TTEWAVSSGITTATNHILTPYPGTSIYDKMD 351


>gi|118444758|ref|YP_878569.1| coproporphyrinogen III oxidase [Clostridium novyi NT]
 gi|118135214|gb|ABK62258.1| oxygen-independent coproporphyrinogen III oxidase, putative
           [Clostridium novyi NT]
          Length = 375

 Score = 65.4 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 45/211 (21%), Positives = 84/211 (39%), Gaps = 13/211 (6%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN--GVCEITLLGQNVNAWRGKGLDGE 243
           C + C +C      G E       +V+ ++ L      V    +    +    G      
Sbjct: 14  CKQKCLYCDFTSYCGRE-----DTMVEYSKALSKEIDNVKNKKISTIFIGG--GTPTYLC 66

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTT-SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
              ++ L  S+ ++     L +T  S+P+   +  +K    +   +  L + +QS  D+ 
Sbjct: 67  LQGWNILKQSIDKLSKTSNLEFTVESNPKTFDEEKLKFLKSIG--VNRLSIGLQSWQDKH 124

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           LKS+ R HT  E+ +     R+      I+ D + G P +T DD++ T+D V K+     
Sbjct: 125 LKSLGRIHTKDEFLKSYHMARN-MGFKNINVDLMFGIPNQTLDDWKETLDEVTKLNPEHL 183

Query: 363 FSFKYSPRLGTPGSNMLEQVDENVKAERLLC 393
             +      GTP  +  E+    + +E L  
Sbjct: 184 SCYSLIIEEGTPFYDFYEKNKIELPSEELER 214


>gi|86748841|ref|YP_485337.1| radical SAM family protein [Rhodopseudomonas palustris HaA2]
 gi|86571869|gb|ABD06426.1| Radical SAM [Rhodopseudomonas palustris HaA2]
          Length = 527

 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 49/337 (14%), Positives = 104/337 (30%), Gaps = 40/337 (11%)

Query: 57  NSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEE 116
           +  D AD + ++  HI      +    + R  +  +     GG  +              
Sbjct: 71  DDFDWADAVFVSGMHI----QRQQMIDICRRAHAYDLPAAIGGPSVSACP---------- 116

Query: 117 ILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVD--TDYSVEDKFERLSIVDGGYNRKR 174
                P  + +   +      +L+ R        D    ++ ED+ +        Y    
Sbjct: 117 --DHYPSFDYLHVGELGDATDQLIARLAHDVARPDRQIVFTTEDRLDMTLFPIPAYELAE 174

Query: 175 GVTAF---LTIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVC-EITLLG 229
                   +    GC   C FC +P   G     ++  Q++ E  ++++ G+   +  + 
Sbjct: 175 CSKYMLGSIQYSSGCPYQCEFCDIPALYGRNPRLKTPEQIIIELDRMVECGIRGSVYFVD 234

Query: 230 QNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMS----DCLIKAHGDLD 285
            N          G +    DLL  L E +         +    ++      ++    D  
Sbjct: 235 DNFI--------GNRKAALDLLPHLVEWQKRTGFALQLACEATLNIAKRPEILTLMRD-- 284

Query: 286 VLMPYLHLPVQSGSDRILKSMNRRHTAY-EYRQIIDRIRSVRPDIAISSDFIVGFPGETD 344
                +   +++     LK+M + H       + +  I S    I + S  I+G   +T 
Sbjct: 285 AYFTTIFCGIETPDPTALKAMQKDHNMMVPILEGVQTISSY--GIEVVSGIILGLDTDTP 342

Query: 345 DDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +     M  +++                TP  + LE+
Sbjct: 343 ETGEFLMQFIEQSQIPLLTINLLQALPKTPLWDRLER 379


>gi|147676584|ref|YP_001210799.1| biotin synthase and related enzymes [Pelotomaculum
           thermopropionicum SI]
 gi|146272681|dbj|BAF58430.1| biotin synthase and related enzymes [Pelotomaculum
           thermopropionicum SI]
          Length = 352

 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/239 (16%), Positives = 83/239 (34%), Gaps = 22/239 (9%)

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
              +  +D  +S  DK  +  + D  + R       +     C K C +C +        
Sbjct: 26  LENQEDLDVLFSKADKIRQKYVGDEVHLR-----GLIEFSNYCRKNCYYCGIRRGNKKLK 80

Query: 204 SR--SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
               S+ ++VD A +    G   + L         G+ +        DL+  + E   + 
Sbjct: 81  RYRMSIEEIVDCAVQAERLGYRTVVLQS-------GEDMYYTADKLIDLIRRIKERCDVA 133

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
                   PR+  + L +A  D         +  ++ +  + + ++     YE  +I+  
Sbjct: 134 ITLSIGERPREEYERLYEAGADR------FLIRFETSNPELYRKLHPDSDYYERMRILSW 187

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           +R +     + S  ++G PG+T +D    +   +++         Y    GTP +    
Sbjct: 188 LREI--GYQVGSGIMIGLPGQTVEDLADDILKFEELELDMVGVGPYICHDGTPLAGNPN 244


>gi|127511966|ref|YP_001093163.1| putative radical SAM protein [Shewanella loihica PV-4]
 gi|126637261|gb|ABO22904.1| conserved hypothetical radical SAM protein [Shewanella loihica
           PV-4]
          Length = 330

 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/193 (20%), Positives = 67/193 (34%), Gaps = 11/193 (5%)

Query: 188 KFCTFCVVPYTRGIEISRSLSQV-VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT 246
             CTFC V        S  +  + V  A             +      ++      ++  
Sbjct: 62  GGCTFCNVASFSHEHGS--IDSIAVQLANGRERAQGKSSKFIA----YFQAYTSTYDEYQ 115

Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILK 304
                Y  +     +      + P  +SD +I          L  +L L +QS +   LK
Sbjct: 116 LLKQRYDEAVADSDIVGLCVGTRPDCVSDEVIALLAGYQARGLEVWLELGLQSANLETLK 175

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
            +NR H   EYR  +  IR+ +  + + +  I+G PGE+ +DF A+   V   G      
Sbjct: 176 RINRGHGFEEYRDTV--IRARKAGLKVCTHLILGLPGESHEDFLASHRAVLDAGVDGLKI 233

Query: 365 FKYSPRLGTPGSN 377
                  G+  + 
Sbjct: 234 HPLHIVEGSTMAK 246


>gi|298493166|ref|YP_003723343.1| radical SAM domain-containing protein ['Nostoc azollae' 0708]
 gi|298235084|gb|ADI66220.1| Radical SAM domain protein ['Nostoc azollae' 0708]
          Length = 527

 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 48/339 (14%), Positives = 108/339 (31%), Gaps = 38/339 (11%)

Query: 62  ADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRS 121
           AD+++ +   +      +    L +IR  K          LV + G    +  +E+    
Sbjct: 66  ADIVIFSAMIV------QKQDLLDQIREAKRRGK------LVALGGPYPTSTADEVEAA- 112

Query: 122 PIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGV-TAFL 180
              + ++  +    LP  +E  + G++      + +       I               +
Sbjct: 113 -GADFLILDEGEITLPMFVEAVQKGEKSGVFRATEKPDVTGTPIPRFDLLESDAYDMMSV 171

Query: 181 TIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
               GC   C FC +    G +  +++ +Q++ E   L + G      +  +        
Sbjct: 172 QFSRGCPFQCEFCDIIVLYGRKPRTKTPAQLLAELDYLYELGWRRGVFMVDD-------N 224

Query: 240 LDGEKCTFSDLLYSL----SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPV 295
             G K     LL  L    +E +         S        +++    +D     + L +
Sbjct: 225 FIGNKRNVKLLLKELKVWMAEHQYPFNFDTEASIDLAQDAEMMELM--VDCGFKAVFLGI 282

Query: 296 QSGSDRILKSMNRR-HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           ++  +  L+   +  +T     + ++ I  ++  +   + FI+GF GE        +   
Sbjct: 283 ETPDEDSLQLTKKFQNTRSSLTESVETI--IKAGLRPMAGFIIGFDGEKAGAGDRIVRFA 340

Query: 355 DKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLC 393
           ++                T   + L+      K  RL  
Sbjct: 341 EQAAIPSTTFAMLQALPNTALWHRLK------KEGRLRE 373


>gi|124514342|gb|EAY55855.1| putative radical SAM family protein [Leptospirillum rubarum]
          Length = 476

 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 41/236 (17%), Positives = 73/236 (30%), Gaps = 21/236 (8%)

Query: 160 FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI-EISRSLSQVVDEARKLI 218
               S+ D     + G  A +  + GC   C +C  P   G     R    VVDE  +L+
Sbjct: 183 PPDRSLFDLSRYARSGGMANIQTKRGCPFHCKYCTYPLLEGDTFRLRESQDVVDEIERLV 242

Query: 219 DNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLI 278
                    +   V++      D       ++L    +I            P  ++  L+
Sbjct: 243 TKDRIRSFFI---VDSIFNAPPDHAHRVSEEILRRKLKI-----RWSCYVTPSGLTRDLL 294

Query: 279 KAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVG 338
           +           + L   S     +  + +  +    +       ++   + +    + G
Sbjct: 295 EVMKRAG--CDGIELGTDSAEQGAMIGLGKSFSVSHLKDTARWCNAL--SLPVCHTLLFG 350

Query: 339 FPGETDDDFRATMDLVDKIG----YAQAFSFKYSPRLGTPGSNMLEQVDENVKAER 390
            PGET    R T+  V+        A A    Y     TP + + E     VK  R
Sbjct: 351 GPGETLQSVRETLKTVEDTRPTAVVAMAGIRVY---PDTPLAALAESR-GLVKNRR 402


>gi|11497859|ref|NP_069081.1| hypothetical protein AF0243 [Archaeoglobus fulgidus DSM 4304]
 gi|3219876|sp|O29996|Y243_ARCFU RecName: Full=Uncharacterized protein AF_0243
 gi|2650398|gb|AAB90990.1| conserved hypothetical protein [Archaeoglobus fulgidus DSM 4304]
          Length = 529

 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 48/288 (16%), Positives = 92/288 (31%), Gaps = 44/288 (15%)

Query: 170 YNRKRGVTAFLTIQEGCDKF-CTFCVVPYTRGIEIS---RSLSQVVDEARKLIDNGVCEI 225
           +     +   +    GC    C+FC+         S   RS   V+ E + L D GV   
Sbjct: 155 HPDFPHIICEIETYRGCYWGKCSFCI-----ERVHSLWFRSPEDVLGEVKALYDCGVRHF 209

Query: 226 TLLGQNVNAWRGKGLDGEKC-----------TFSDLLYSLSEIKGLVRLRYTTSHPRDMS 274
            L  Q          +G                 DL   +  +        T +   + S
Sbjct: 210 RLGRQTDFFSYLGEFEGVPRPNPEAMKKFHRAIWDLCPKIKTLHIDNVNPKTIAEHPEES 269

Query: 275 DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV--------R 326
             LIK             + ++S  +R+++  +   +  E    I+ I            
Sbjct: 270 AELIKTIVMYQTPGNVAAMGLESADERVVRKNSLAASPEEVMFAIELINRYGRHPSYNGL 329

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIG-----YAQAFSFKYSPRLGTPGSNMLEQ 381
           P      +F++G  GET + F      ++++        +    +     GTP   M ++
Sbjct: 330 PYFLPGINFVIGLKGETKETFELNYRFLEEVMERNLLLRRINIRQVKIFPGTP---MEKE 386

Query: 382 VDENVKAER--LLCLQKKLREQQVSFNDACV---GQI---IEVLIEKH 421
            D  +K  R   +  + ++RE   +     +   G+    + V +E  
Sbjct: 387 GDRRLKKHRKEFIAFKNRVRENIDTPMLKKILPKGRRITDLRVEVEGK 434


>gi|289523154|ref|ZP_06440008.1| Fe-S protein, radical SAM family [Anaerobaculum hydrogeniformans
           ATCC BAA-1850]
 gi|289503697|gb|EFD24861.1| Fe-S protein, radical SAM family [Anaerobaculum hydrogeniformans
           ATCC BAA-1850]
          Length = 560

 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 80/473 (16%), Positives = 156/473 (32%), Gaps = 55/473 (11%)

Query: 45  EDMFFSQGYERV---------------NSMDDADLIVLNT-CHIREKAAEKVYSFLGRIR 88
             +    GYE                   +  AD+IV+     +  +        L  ++
Sbjct: 31  AGVLKLFGYEIAYYTCDQWREDSKPVEEILRRADVIVIAAGLSVPGRYRGGTPLLLSELQ 90

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEE-ILRRSPIVNVVVGPQTYYRLPELLERARFGK 147
            + + + +    L   +    A   G+E +   +  ++ VV       L + L +     
Sbjct: 91  KISSLKRRGFLFLGGPITSGYALRGGKEAMAISADNIDFVVTGDPEEVLYQFLTKNDIDL 150

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKF---CTFCVVPYTRGIEIS 204
           R   T   +       S V   +     V A L +  GCDK    C+FC    +  IE  
Sbjct: 151 RARRTYEKIRLWSVFGSEVVKLHPWYPWVMAELELSRGCDKGGTPCSFCTEGTSMKIEE- 209

Query: 205 RSLSQVVDEARKLIDNGVCEITLLG-QNVNAWRGKGLDGEKCTFSDLLY----------- 252
           R +S V+DE R L + G+         N+  ++G   D ++   +D L            
Sbjct: 210 RPISDVLDEMRALYNFGIRAFRFGRCSNILTYQGTTHDNKRKPNADALRDLYSQARETCP 269

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
            L  +        T     D +   I+     +     L   +++    +    N +   
Sbjct: 270 QLMTLHTDNANPRTIVDFPDAAAEAIEIISKYNTEGDVLSFGIENLHPFVRNINNLKVNF 329

Query: 313 YEYRQIIDRIRSV---------RPDIAISSDFIVGFPG---ETDDDFRATMDLVDKIGYA 360
            E    +  +  +          P +    +F+VG  G   E+ +     +  + + G  
Sbjct: 330 DEALFAVKVVNEIGGWRPTPRSLPKLLPGLNFLVGLAGDSNESLELHAEFLARILEEGLM 389

Query: 361 --QAFSFKYSPRLGTPGSNMLEQVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIE 415
             +    K      TP   ++++    +K    ++     +   +Q +    A +G II+
Sbjct: 390 LRRINIRKPMLFENTPLKVLIDKYPSKIKENPYKKWKEWVRSQIDQPLLKRLAPLGCIIK 449

Query: 416 VL-IEKHGKEKGKLVGR--SPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYG 465
            L IE+  K      GR  + +   V +      +G +I   +TD    +L  
Sbjct: 450 NLRIEE--KVGNLSFGRQLATYPLLVGVVDDTLPLGTVIDAAVTDYGRRSLTA 500


>gi|206895763|ref|YP_002246862.1| oxygen-independent coproporphyrinogen III oxidase
           [Coprothermobacter proteolyticus DSM 5265]
 gi|206738380|gb|ACI17458.1| oxygen-independent coproporphyrinogen III oxidase
           [Coprothermobacter proteolyticus DSM 5265]
          Length = 258

 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 41/202 (20%), Positives = 78/202 (38%), Gaps = 23/202 (11%)

Query: 185 GCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK 244
           GC + C FC     R  E  +   + ++EA   I            +  A+ G      +
Sbjct: 12  GCRQRCVFC---NQRAAERIKPWKESIEEAFHYIQKSNLVY-----DEIAFYGGTPTSSE 63

Query: 245 CTFSDLLY------SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
               D+L        + +IKG+      ++ P ++++ +I+   D    +  + + V+S 
Sbjct: 64  NLLKDILQPFQTFLKIGKIKGIR----ISTRPDEINESIIQILVDYG--VSTVEIGVESF 117

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           SD +L+   R HT  + ++  + ++    ++      +VG PGETD     T+     + 
Sbjct: 118 SDEVLRLSKRGHTEEDVKRAHELLKGRFREVF---QLMVGLPGETDRHREETISKTVSLK 174

Query: 359 YAQAFSFKYSPRLGTPGSNMLE 380
                 F      GT    M E
Sbjct: 175 PWGVRYFPTLVLRGTELQKMYE 196


>gi|218246882|ref|YP_002372253.1| Radical SAM domain-containing protein [Cyanothece sp. PCC 8801]
 gi|218167360|gb|ACK66097.1| Radical SAM domain protein [Cyanothece sp. PCC 8801]
          Length = 530

 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 47/309 (15%), Positives = 98/309 (31%), Gaps = 30/309 (9%)

Query: 72  IREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ 131
           +      +++  +G IR   +   +   +  ++V G       E++    P   +V   +
Sbjct: 111 VTTAYYGELWRNIGLIRRGLSRAKQYHPEARLMVGGGAVSVFYEQLKSELPQGTIVSVGE 170

Query: 132 TYYRLPELLERARFGKRVVDTDYSVE--------------------DKFERLSIVDGGYN 171
               L +LL    F +         +                    D  + +      Y 
Sbjct: 171 GETLLEKLLRDQDFSRERCYIVGESDPRQRLIHEEPTPLEKTACNYDYIQSIWPEFDYYF 230

Query: 172 RKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR-SLSQVVDEARKLIDNGVCEITLLGQ 230
           ++      +  + GC   C +CV     G ++      +VV E R+L D G+        
Sbjct: 231 QENDFYIGVQTKRGCPHNCCYCVYTVVEGKQVRINPADEVVKEMRQLYDRGIRNFWFTDA 290

Query: 231 NVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY-TTSHPRDMSDCLIKAHGDLDVLMP 289
                R    D E      L   L    G+  + +       +++  L          M 
Sbjct: 291 QFIPARRFIQDAE----QLLEKILDS--GMTDIHWAAYIRADNLTPNLCDLMVKTG--MN 342

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           Y  + + SGS  +++ M   +      Q    +++   +  +S ++      ET D  R 
Sbjct: 343 YFEIGITSGSQELVRKMRMGYNLRTVLQNCRDLKAAGFNDLVSVNYSFNVIDETFDTIRQ 402

Query: 350 TMDLVDKIG 358
           T+    ++ 
Sbjct: 403 TIAYHRELE 411


>gi|163859124|ref|YP_001633422.1| lipoyl synthase [Bordetella petrii DSM 12804]
 gi|163262852|emb|CAP45155.1| lipoic acid synthase [Bordetella petrii]
          Length = 332

 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 45/251 (17%), Positives = 89/251 (35%), Gaps = 21/251 (8%)

Query: 126 VVVGPQTYYRLPELL--ERARFGKRVVDT-----DYSVEDKFERLSIVDGGYNRKRGVTA 178
           + + P    + PE +  + A  G R  D      ++S+    E  S  + G    +G   
Sbjct: 38  IKIVPAERLKKPEWIRVKAAAPGSRFYDIKRILREHSLHTVCEEASCPNIGECFGKGTAT 97

Query: 179 FLTIQEGCDKFCTFCVVPYTRGIEISRSLS--QVVDEARKLIDNGVCEITLLGQNVNAWR 236
           F+ + + C + C FC V + R       L   +  + AR +    +  + +   +    R
Sbjct: 98  FMIMGDKCTRRCPFCDVGHGRPD----PLDASEPENLARTIAALKLSYVVITSVD----R 149

Query: 237 GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQ 296
               DG    F D +  +  +    R+        D    L +A   L+   P +     
Sbjct: 150 DDLRDGGAAHFVDCISRIRALSPSTRIEVLVP---DFRGRLERALAILNAGPPDVMNHNL 206

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
               R+ K            +++   + + P++   S  ++G  GETD++    M  + +
Sbjct: 207 ETVPRLYKQARPGSDYAHSLKLLAEFKQLHPEVPTKSGLMLGL-GETDEEILQVMRDLRE 265

Query: 357 IGYAQAFSFKY 367
            G       +Y
Sbjct: 266 HGVDMLTIGQY 276


>gi|312837890|gb|ADR01089.1| NocN [Nocardia sp. ATCC 202099]
          Length = 420

 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 79/229 (34%), Gaps = 17/229 (7%)

Query: 186 CDKFCTFC----VVP---YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK 238
           C   CTFC     +P     R  E S   + +     ++   G  ++   GQ        
Sbjct: 40  CHSKCTFCDWVQAIPTKDLLRKPEDSVRKNYIRALVTEIETRGA-QLRAAGQVPYVVYWG 98

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL----MPYLHLP 294
           G        ++       +     L        + S   +     L+         +   
Sbjct: 99  GGTASSLDNAEAEAIWGALDSAFDLSTVAEATIECSPDTVDK-AKLEFFRGLGFNRVSSG 157

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           VQS  D  L+ + RRHTA E  +I+   R    D  +S D + GFP +  D+ RAT++  
Sbjct: 158 VQSFDDARLRRLGRRHTAGEADRIVHHAREAGFD-EVSIDIMSGFPDQELDELRATVEKA 216

Query: 355 DKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQV 403
             +       + + P   TPG+ M  ++    K   L   Q    E + 
Sbjct: 217 VSLPLTHLSLYSFRP---TPGTFMRRKLAGTEKRAYLRKQQALFTEARR 262


>gi|254882661|ref|ZP_05255371.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|254835454|gb|EET15763.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
          Length = 642

 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 51/327 (15%), Positives = 105/327 (32%), Gaps = 66/327 (20%)

Query: 111 QAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGY 170
           +A  ++  +++     +      Y    +L+       VV+  Y    + E     D  Y
Sbjct: 259 EACLKDKKKQAENFRFIEEESNKYEASRILQDTGNETVVVNPPYPPMSQGELDHSFDLPY 318

Query: 171 NR-------KRGVTAFLTI------QEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEAR- 215
            R        + + AF  I        GC   C FC +   +G   +SRS   ++ E R 
Sbjct: 319 TRMPHPKYKGKRIPAFDMIKFSVNLHRGCFGGCAFCTISAHQGKFIVSRSKESILREVRA 378

Query: 216 --KLIDNGVCEITLLGQNVNAWRGKGLDGEKCT----------------------FSDLL 251
             ++ D       L G + N +  +G D + C                         D+ 
Sbjct: 379 ITEMPDFKGYLSDLGGPSANMYAMRGKDEKICRRCKRPSCIHPKVCPNLNTDHRPLLDIY 438

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL----------------HLPV 295
           +S+  + G+ +          +   L++       +                     +  
Sbjct: 439 HSVDALPGIKKSFIG----SGVRYDLLQYQSKDPAVNRSTAEYTRELIAHHVSGRLKVAP 494

Query: 296 QSGSDRILKSMNRR-----HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
           +  SD++L+ M +      +   +    I++  ++R  I     FI   PG T++D    
Sbjct: 495 EHTSDQVLQIMRKPSFSQFYDFKKTFDKINKELNMRQQIIPY--FISSHPGCTEEDMAEL 552

Query: 351 MDLVDKIGYAQAFSFKYSPRLGTPGSN 377
             +  K+ +       ++P   T  + 
Sbjct: 553 AVITKKLDFHLEQVQDFTPTPMTVATE 579


>gi|209521261|ref|ZP_03269981.1| lipoic acid synthetase [Burkholderia sp. H160]
 gi|209498303|gb|EDZ98438.1| lipoic acid synthetase [Burkholderia sp. H160]
          Length = 335

 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 81/220 (36%), Gaps = 10/220 (4%)

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
           + +  ++++    E  S  + G    +G   F+ + + C + C FC V + R   +    
Sbjct: 70  KQILREHNLHTVCEEASCPNIGECFGKGTATFMIMGDKCTRRCPFCDVGHGRPDPL--DT 127

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
            +  + AR +    +  + +   +    R    DG    F + +    E+    R+   T
Sbjct: 128 DEPANLARTIAALKLKYVVITSVD----RDDLRDGGAAHFVECIRQTRELSPETRIEILT 183

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
               D    L +A G L+   P +         R+ K            +++   +++ P
Sbjct: 184 P---DFRGRLDRALGILNAAPPDVMNHNLETVPRLYKEARPGSDYAHSLKLLKDFKALHP 240

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
            +A  S  +VG  GET+++    M  + +         +Y
Sbjct: 241 HVATKSGLMVGL-GETEEEILQVMRDLREHDVDMLTIGQY 279


>gi|85813918|emb|CAF31547.1| fortimicin KL1 C-methyltransferase [Micromonospora olivasterospora]
          Length = 553

 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/205 (18%), Positives = 78/205 (38%), Gaps = 23/205 (11%)

Query: 177 TAFLTIQEGCDKFCTFCVVPYTRG-IEISRSLSQVVDEARKLI-DNGVCEITLLGQNVNA 234
           TA L    GC   C+FC V  T G    +R+   VVDE    + ++G+    +   N   
Sbjct: 234 TATLITSRGCPFSCSFCTVHATVGKKFRARAPENVVDEIEHYVTEHGIRRFFIEDDNFTF 293

Query: 235 WRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT-SHPRDMSDCLIKAHGDLDVLMPYLHL 293
                   +     ++  +++     V L          +   L+            L L
Sbjct: 294 --------DIARVHEICRAITRRGLDVELHLPNGMTVVKLDKPLVDDMAAAG--FQSLFL 343

Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR--PDIAISSDFIVGFPGETDDDF-RAT 350
            +++   + L+ + +  T+    + ++    +     I + +  IVG  G+T  +  R +
Sbjct: 344 GLETTDVKRLRQIRKGFTS---LEKVNAGAGLFTDHGITVGASLIVGLLGQTPAEVARDS 400

Query: 351 MDLVDK-IGYAQAFSFKYSPRLGTP 374
           ++L+   I +   ++  + P  G+P
Sbjct: 401 INLMLAGIRF---WTNPFYPIPGSP 422


>gi|261417376|ref|YP_003251059.1| hypothetical protein Fisuc_2997 [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261373832|gb|ACX76577.1| conserved hypothetical protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|302328091|gb|ADL27292.1| radical SAM protein, TIGR01212 family [Fibrobacter succinogenes
           subsp. succinogenes S85]
          Length = 295

 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 33/192 (17%), Positives = 69/192 (35%), Gaps = 17/192 (8%)

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS 248
            C++C          S    +     ++ +   + ++     N                 
Sbjct: 44  GCSYC-----NNRSFSPVFDEAKVSIQEQLKKYIPKLRDKYPNAGILAYLQPYTNTHAPL 98

Query: 249 DLLYSL-------SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
           + L  +        EI GL           +  + L + +    +++    + +Q+ +D 
Sbjct: 99  EHLREIIDPIIKHKEIAGLAIGTRPDCLEDEKIEYLAELNHKKPIIVE---IGLQTANDL 155

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
            L  +NRRHT  E+   + R ++    + +++  IVG PGE  +DF+ T  +V  +  A 
Sbjct: 156 TLAGINRRHTLAEFEDAVKRCQAA--GLTVTTHVIVGLPGEKMEDFKHTAQVVHDLKLAA 213

Query: 362 AFSFKYSPRLGT 373
                    +GT
Sbjct: 214 VKIHPLHIVVGT 225


>gi|254480702|ref|ZP_05093949.1| Radical SAM N-terminal domain family protein [marine gamma
           proteobacterium HTCC2148]
 gi|214039285|gb|EEB79945.1| Radical SAM N-terminal domain family protein [marine gamma
           proteobacterium HTCC2148]
          Length = 711

 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 47/284 (16%), Positives = 91/284 (32%), Gaps = 35/284 (12%)

Query: 131 QTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNR---KRGVTAFLTIQEGCD 187
           Q +      L          + D+  E  + RL     G  R      +   + I  GC 
Sbjct: 323 QAHGDREVWLNTPPIPLETDELDWLFELPYTRLPHTSYGDARLPAYEMIRHSVNIMRGCF 382

Query: 188 KFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDNGVCEITLL----GQNVNAWR------ 236
             CTFC +    G  I +RS   ++ E   + D       ++    G   N WR      
Sbjct: 383 GGCTFCSITEHEGRIIQNRSEESILREVESIRDTSPAFTGVISDLGGPTANMWRLACKSK 442

Query: 237 ----------------GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKA 280
                            K L+ ++    +L     EI G+ ++   +    D++    + 
Sbjct: 443 DIEAKCRKLSCVFPGICKNLNTDQKPLVELYRKAREIDGVKKVLIASGLRYDIAVESPEY 502

Query: 281 HGDL--DVLMPYLHLPVQSGSDRILKSMNRR--HTAYEYRQIIDRI-RSVRPDIAISSDF 335
             +L    +  YL +  +   +  L  M +    T   ++ + ++  R+   +  +   F
Sbjct: 503 VKELVTHHVGGYLKIAPEHTEEGPLDKMMKPGIGTYDRFKAMFEKYSRAAGKEQYLIPYF 562

Query: 336 IVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
           I   PG +D D       + +  +       + P      + M 
Sbjct: 563 IAAHPGTSDKDMMNLALWLKRNKFRADQVQTFYPSPMASATAMY 606


>gi|296445618|ref|ZP_06887573.1| Radical SAM domain protein [Methylosinus trichosporium OB3b]
 gi|296256863|gb|EFH03935.1| Radical SAM domain protein [Methylosinus trichosporium OB3b]
          Length = 677

 Score = 65.0 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 47/263 (17%), Positives = 84/263 (31%), Gaps = 42/263 (15%)

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRG--------VTAFLTIQEGCDKFCTFCVVPYTRG 200
            +    +  D    L      +    G        +   +TI  GC   C+FC +    G
Sbjct: 308 PIPLTMAEMDGVYDLPFARAPHPSYEGAKIPAWEMIRHSVTIMRGCFGGCSFCSITEHEG 367

Query: 201 IEI-SRSLSQVVDEARKLIDNGVCEITLL----GQNVNAWR------------------- 236
             I SRS   ++ E   + D       ++    G   N +R                   
Sbjct: 368 RIIQSRSEESILREIEIIRDKTEGFTGIISDIGGPTANMYRLACRDKETEALCRRPSCVY 427

Query: 237 ---GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL--DVLMPYL 291
               K LD        L      + GL ++   +    D++        +L    +  YL
Sbjct: 428 PDVCKNLDTNHDPLIQLYRKARALPGLKKVMVASGVRYDLAVKSPAYIRELVEHHVGGYL 487

Query: 292 HLPVQSGSDRILKSMNRRH--TAYEYRQIIDRI-RSVRPDIAISSDFIVGFPGETDDDFR 348
            +  +   +  L  M +    +   ++Q+ D   R+ + +  +   FI   PG TD+D  
Sbjct: 488 KIAPEHTEEGPLSKMMKPGIGSYDRFKQLFDAAARAAKKEYYLIPYFIAAHPGTTDEDMM 547

Query: 349 ATMDLVDKIGY--AQAFSFKYSP 369
                + +  Y   Q  +F  SP
Sbjct: 548 NLALWLKRNKYRADQVQTFLPSP 570


>gi|257357707|dbj|BAI23333.1| putative C-methyltransferase [Streptomyces griseus]
          Length = 645

 Score = 65.0 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 63/365 (17%), Positives = 113/365 (30%), Gaps = 48/365 (13%)

Query: 90  LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149
           L +   +   D   V  G     + +++ R  P V++VV  +      EL+      +  
Sbjct: 84  LADVHKQLKPDGFTVFGGNHVSHQAKKVFRECPDVDIVVNGEGELTFRELVTAILANRHT 143

Query: 150 VD--------------TDYSVEDK--FERLSIVDGGY-----------NRKRGVTAFLTI 182
            D                ++  D+   + L I+   +            R     A L  
Sbjct: 144 PDFTDVAGLSFRLSGDEYFTTPDRARIDDLDIIPSPFLTGAIPLLDRSGRFPYEFALLET 203

Query: 183 QEGCDKFCTFCVVPYTRG-IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD 241
             GC   C+FC      G    S S  ++  E      + V  + L   N        L+
Sbjct: 204 NRGCPYRCSFCYWGGATGQRVRSFSRDRLAAELDLFGYHQVPTVFLCDANFG-----MLE 258

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
            ++    DLL    +    V L    +  +      I              L +Q+ SD 
Sbjct: 259 ADEEFTEDLLKIHEKYGFPVSLEANWAKNKSQRFHRIVRTLKQYGFKSSFTLALQTLSDE 318

Query: 302 ILKSMNRRHTA-YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
            L  M RR+    +++ + + + +    +    + I G PGET + F    D + +    
Sbjct: 319 ALTDMRRRNMKLNQWQDLAEWLAA--EGMESFVELIWGSPGETVETFLDGYDRIAE-KVP 375

Query: 361 QAFSFKYSPRLGT---PGSNMLEQVD--------ENVKAERLLCLQKKLREQQVSFNDAC 409
           +   +       T       +   V         E V A R   L +    Q+  F    
Sbjct: 376 RIAVYPLLLLPNTDYSEKRELHGFVTVRGESDDFEYVLASRSSTLAENFAMQRFMFLARI 435

Query: 410 VGQII 414
           +G+  
Sbjct: 436 LGENQ 440


>gi|251780333|ref|ZP_04823253.1| radical SAM domain protein [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|243084648|gb|EES50538.1| radical SAM domain protein [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 658

 Score = 65.0 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 53/357 (14%), Positives = 113/357 (31%), Gaps = 67/357 (18%)

Query: 69  TCHIREK-AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVV 127
           TC++ E+    + Y  +   + + N ++K      V                      ++
Sbjct: 202 TCYVTEQINDLEDYIEIPSYKEVCNDKVKYADASRVQYLEQDPVRGK-----------II 250

Query: 128 VGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTI----- 182
           V       L + +      +  +D+ Y +        I +G      G++A   +     
Sbjct: 251 VQKHANKYLVQNIPEMPLNREELDSVYDLPYMKNYHPIYEGM----GGISAIEEVKFSTV 306

Query: 183 -QEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLID---------------NGVCEI 225
              GC   C FC + + +G  + SRS   +++E  ++                     + 
Sbjct: 307 SSRGCFGNCNFCAITFHQGRIVQSRSKESILNEVEEITKLPDFKGYIHDVGGPTANFRKP 366

Query: 226 TLLGQ-NVNAWR---------GKGLDGEKCTFSDLLYSLSEIKGLV--------RLRYTT 267
               Q  + A +          K ++ +   + DLL ++ ++  +         R  Y  
Sbjct: 367 ACSKQLTLGACKAKECLYPSPCKNMEVDHSEYLDLLRAIRKVPKVKKAFVRSGLRYDYIM 426

Query: 268 SHPRD-MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
           +   D     L++ H     +   L +  +  S   LK M +  +   Y +  ++  S+ 
Sbjct: 427 ADKDDTFFKELVEYH-----VSGKLKVAPEHVSKDTLKYMGKP-SGKTYDKFTEKFYSIN 480

Query: 327 PDIA----ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
             +     I    +   PG T        + +  I Y       + P  GT  + M 
Sbjct: 481 NKLGKKQFIVPYLMSSHPGSTLKSAIELAEYLRDINYQPEQVQDFYPTPGTLSTTMY 537


>gi|197119956|ref|YP_002140383.1| radical SAM domain iron-sulfur cluster-binding oxidoreductase
           [Geobacter bemidjiensis Bem]
 gi|197089316|gb|ACH40587.1| radical SAM domain iron-sulfur cluster-binding oxidoreductase
           [Geobacter bemidjiensis Bem]
          Length = 501

 Score = 65.0 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 57/326 (17%), Positives = 107/326 (32%), Gaps = 35/326 (10%)

Query: 62  ADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRS 121
           AD + ++   ++    E     L R R+++   +  G     + + C             
Sbjct: 66  ADYVFVSAMTVQ---RESARQVLSRCRDMRVKTVAGGP----LFSTCH---------DEF 109

Query: 122 PIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFE-RLSIVDGGYNRKRGVTAFL 180
           P  N ++  +    LP  L  A   K      Y  E + +   + +           A +
Sbjct: 110 PEANHLLLGEAEETLPRFL--ADLDKEAPQRLYRPEGRPDLSSTPIPKWSLIDMRHYASM 167

Query: 181 TIQ--EGCDKFCTFCVVPYTRG-IEISRSLSQVVDEARKLIDNGVCEIT-LLGQNVNAWR 236
            IQ   GC   C FC +    G    +++  QV+ E   L   G       +  N    +
Sbjct: 168 NIQYSRGCPFDCEFCDITQLFGHRPRTKNPEQVIAELEALYAAGWRGGVFFVDDNFIGDK 227

Query: 237 GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPR-DMSDCLIKAHGDLDVLMPYLHLPV 295
           GK    +K     +L  + +++G     YT +         LI+    +      + + +
Sbjct: 228 GK---LKKEVLPAILSWM-KVRGYPFFFYTEASINLADDPQLIEMM--VAAGFQEVFIGI 281

Query: 296 QSGSDRILKSMNR--RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
           +S  +  LK   +   +       +    R+    + +   FIVGF  ++   F      
Sbjct: 282 ESPEEDSLKETGKLQNYNRDLVASVHYLQRA---GLQVQGGFIVGFDSDSPAIFEKQFRF 338

Query: 354 VDKIGYAQAFSFKYSPRLGTPGSNML 379
           + + G   A         GT   N L
Sbjct: 339 IQESGIVTAMVGVLMVLRGTKLYNRL 364


>gi|78211880|ref|YP_380659.1| lipoyl synthase [Synechococcus sp. CC9605]
 gi|78196339|gb|ABB34104.1| lipoic acid synthetase [Synechococcus sp. CC9605]
          Length = 289

 Score = 65.0 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 33/198 (16%), Positives = 63/198 (31%), Gaps = 11/198 (5%)

Query: 175 GVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA 234
           G   FL +  GC + C +C +            ++       +   G+  + +   N   
Sbjct: 48  GTATFLIMGPGCTRACPYCDI-DFDKRVRELDPTEPQRLGEAVARLGLKHVVITSVN--- 103

Query: 235 WRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP 294
            R    DG    F   +  + +   L  +           D L         ++ +    
Sbjct: 104 -RDDLADGGASQFVACIEQVKQRSPLTTIELLIPDFCGNWDALATVMAAAPHVLNHNIET 162

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           V     R+ +    +       +++ R+R   P     S  +VG  GETD++   T+  +
Sbjct: 163 V----PRMYRLARPQGIYERSLELLQRVREQWPKAYSKSGLMVGL-GETDEEIIETLRDL 217

Query: 355 DKIGYAQAFSFKY-SPRL 371
            K         +Y SP  
Sbjct: 218 RKHKVDIVTIGQYLSPGP 235


>gi|260592494|ref|ZP_05857952.1| radical SAM domain protein [Prevotella veroralis F0319]
 gi|260535540|gb|EEX18157.1| radical SAM domain protein [Prevotella veroralis F0319]
          Length = 710

 Score = 65.0 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 51/307 (16%), Positives = 93/307 (30%), Gaps = 58/307 (18%)

Query: 127 VVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT--------- 177
           +           +L+       VV+  Y      E  +  D  Y R+             
Sbjct: 282 IEEESNKKHAQRILQAVDNLYAVVNPPYPTMTTAEIDAAYDLPYTREPHPKYRGKTIPAY 341

Query: 178 ----AFLTIQEGCDKFCTFCVVPYTRGIEIS-RSLSQVVDEARKLIDN----------GV 222
                 + I  GC   C FC +   +G  +S RS   ++ E +++I+           G 
Sbjct: 342 EMIKHSVNIHRGCFGGCAFCTISAHQGKFVSCRSKESILKEVKQVIEMPDFKGYLSDLGG 401

Query: 223 CEITLLGQ---------------NVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
               + G                 VN      L+ +     D+ +S+ E+ G+ +    +
Sbjct: 402 PSANMYGMAGKNQKACEHCKRPSCVNPEICPNLNTDHSRLLDIYHSVDELSGIKKSFIGS 461

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLH------------LPVQSGSDRILKSMNRR-----H 310
               D+     K     +    Y H            +  +  SDR+LK M +      +
Sbjct: 462 GVRYDLLLHKSKDEKSNEAARQYTHELITRHVSGRLKVAPEHTSDRVLKLMRKPSFQQFY 521

Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370
                   I+R   +R  I     FI   PG  ++D      L   + +       ++P 
Sbjct: 522 IFKRIFDRINREEGLRQQIIPY--FISSHPGCQEEDMAELAVLTKDLDFHLEQIQDFTPT 579

Query: 371 LGTPGSN 377
             T  + 
Sbjct: 580 PMTVSTE 586


>gi|289209127|ref|YP_003461193.1| lipoic acid synthetase [Thioalkalivibrio sp. K90mix]
 gi|288944758|gb|ADC72457.1| lipoic acid synthetase [Thioalkalivibrio sp. K90mix]
          Length = 318

 Score = 65.0 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 33/220 (15%), Positives = 70/220 (31%), Gaps = 10/220 (4%)

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
           + +  D  +    E  S  + G     G   F+ + + C + C FC V    G   +   
Sbjct: 53  KRILRDQKLHTVCEEASCPNLGECFAHGTATFMIMGDICTRRCPFCDV--AHGRPEALDP 110

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
            +    A  +   G+  + +   +    R    DG    F D +  +  +    ++    
Sbjct: 111 DEPRHLAETIQALGLKYVVITSVD----RDDLRDGGAGHFVDCIREVRTLNPTTKIEILV 166

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
              R   D  ++         P +         R+ +            +++ R R   P
Sbjct: 167 PDFRGRMDRALEIMHQAP---PDVFNHNLETIPRLYREARPGADYQWSLELLKRFREQHP 223

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
            +   S  ++G  GET ++    +  + + G       +Y
Sbjct: 224 GVPTKSGLMLGL-GETREELLEVLADLREHGCDMLTLGQY 262


>gi|144899015|emb|CAM75879.1| Fe-S oxidoreductase [Magnetospirillum gryphiswaldense MSR-1]
          Length = 502

 Score = 65.0 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 57/337 (16%), Positives = 103/337 (30%), Gaps = 52/337 (15%)

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
           +   +     +   + +VV+ G       EE L + P V+ VV  +   R+  LL     
Sbjct: 102 QALRMAEVAKQACPNAVVVMGGPHVSVFPEETLEQ-PCVDYVVVGEGEERMLALLRCLEA 160

Query: 146 GKRVVDT-----------------------------------DYSVEDKFERLSIVDGGY 170
           G+                                           VE  FE  +      
Sbjct: 161 GETPAIPGVLGRPEDRRLLRDHPLVKVNFIKEVDDLPLPAYDMVDVERYFELQANGFSPR 220

Query: 171 NRKRGVTAFLTI-QEGCDKFCTFCVVPYTRG-IEISRSLSQVVDEARKLIDNGVCEITLL 228
            R+ G  A   I   GC   CTFC +  T G    + S   +      L +    +    
Sbjct: 221 TREWGRRAVTMITSRGCPHRCTFCSIHATMGYRWRAHSPDYIRRHIALLRERYAIDFIHF 280

Query: 229 GQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLM 288
             +      +  D       +LL  L           T +  R     L +     +   
Sbjct: 281 EDDNLTHDSERYDRLLNILLELLPRL--------PWDTPNGVRGDGWTLERVRRTRESGC 332

Query: 289 PYLHLPVQSGSDRIL-KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDF 347
            YL + ++S    +L K + +R    +   ++  + + +  + + + ++VG PGE  +D 
Sbjct: 333 QYLAVAIESAVQNVLDKVVRKRLDLAQVDNLM--VFTHQEGLRLMAFYVVGLPGERLEDI 390

Query: 348 RAT--MDLVDKIGY-AQAFSFKYSPRLGTPGSNMLEQ 381
            AT    L     +             GT    ++E+
Sbjct: 391 DATFRYALARYFRFGVWPGMNLAVALPGTELGRIVER 427


>gi|20091674|ref|NP_617749.1| hypothetical protein MA2850 [Methanosarcina acetivorans C2A]
 gi|19916846|gb|AAM06229.1| conserved hypothetical protein [Methanosarcina acetivorans C2A]
          Length = 576

 Score = 65.0 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 57/327 (17%), Positives = 113/327 (34%), Gaps = 39/327 (11%)

Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLT----IQEGCDKF--CTFC 193
           L         VD  +    +  R         R+     +         GC +   C+FC
Sbjct: 162 LPTGLKAPESVDHRFRTTAEIGRWGPKGAFLIRQHPDYPYCMCELETYRGCGRRVHCSFC 221

Query: 194 VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQ-NVNAWRGKGLDGE-KCTFSDLL 251
             P+  G    R +  VV E   L  NG     +  Q ++ ++ G    G       ++L
Sbjct: 222 TEPF-YGASDYRPVEDVVAEVSALYSNGARYFRIGRQPDLFSYHGADAGGPVPKPVPEVL 280

Query: 252 YSLSE-----IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY------LHLPVQSGSD 300
             L +        L  L    ++P  ++    ++   L  ++ Y          +++   
Sbjct: 281 ERLYKGIRNSAPELSVLHMDNANPITLATYPKESEQILKTIIKYHTSGDVAAFGMETADP 340

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSV--------RPDIAISSDFIVGFPGETDDDFRATMD 352
           ++  + + + T+ E  + I  +  +         P+I    +F+ G  GET   F+   D
Sbjct: 341 KVFAANSLKATSEEVFEAIKLVNRLGAGRGTNGLPEILPGINFVHGLMGETKKTFQLNYD 400

Query: 353 LVDKI-----GYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFND 407
            + ++        +    +     GTP S   E   ++ K   L   ++  +   +    
Sbjct: 401 FLLQVLNSGLLLRRINIRQVMAFPGTPISGRDEAARKH-KKLFLDYKEQVRKNIDLPMLR 459

Query: 408 ACV--GQII-EVLIEKHGKEKGKLVGR 431
             V  G ++ +V+ E HG+  G   GR
Sbjct: 460 RVVPEGTVLKDVMCEVHGR--GITFGR 484


>gi|301058172|ref|ZP_07199224.1| radical SAM protein, TIGR01212 family [delta proteobacterium
           NaphS2]
 gi|300447804|gb|EFK11517.1| radical SAM protein, TIGR01212 family [delta proteobacterium
           NaphS2]
          Length = 339

 Score = 65.0 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 34/214 (15%), Positives = 72/214 (33%), Gaps = 13/214 (6%)

Query: 174 RGVTAFLTIQE-GCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNV 232
           + +   + I   GC   C FC            +    V +            +   + +
Sbjct: 2   KPLIIPIFISHAGCPHRCLFCDQEKITDRSTHITDPSEVRKTLDAAARAKRFGSYKNREL 61

Query: 233 NAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLH 292
             + G      K     LL + +       +R  T +   +S        +   ++   H
Sbjct: 62  AFYGGTFTGLSKSHMESLLDAAA-----PYIRNGTLNSIRISTRPDSLDAERLAILKAYH 116

Query: 293 -----LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDF 347
                L VQS +D +L    R HTA + ++ +  +++     ++    + G PG++ + F
Sbjct: 117 VTTVELGVQSMNDWVLALSRRGHTAKDSQEAVRMLKN--HGFSVGIQLMPGLPGDSKESF 174

Query: 348 RATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
             T D V  +       +      GT  + + ++
Sbjct: 175 LKTADRVLALKPQMVRLYPALVIKGTGMARLYDE 208


>gi|21226323|ref|NP_632245.1| Fe-S oxidoreductase [Methanosarcina mazei Go1]
 gi|20904571|gb|AAM29917.1| Fe-S oxidoreductase [Methanosarcina mazei Go1]
          Length = 574

 Score = 65.0 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 59/335 (17%), Positives = 123/335 (36%), Gaps = 41/335 (12%)

Query: 125 NVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQE 184
           + + G ++    P  L+     +    T   +     R + +   +         L    
Sbjct: 149 DGIEGERSTGSFPVRLKDQESIEHRFRTTSEIGCWGVRGAFLIRQHPDYPHCMCELETYR 208

Query: 185 GCDK--FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQ-NVNAWRGKGLD 241
           GC +   C+FC  P+  G    R +  VV E   L   G     +  Q ++ ++ G    
Sbjct: 209 GCGRKVHCSFCTEPF-YGSSDYRPVEDVVSEVSALYSYGARYFRIGRQPDLFSYHGTDAG 267

Query: 242 GE-KCTFSDLLYSLSE-----IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY----- 290
           G       ++L  L +       GL  L    ++P  ++    ++   L  ++ +     
Sbjct: 268 GPVPKPVPEVLERLYKGIRNSAPGLSVLHMDNANPITLATYPEESEQILKTIVKFHTPGD 327

Query: 291 -LHLPVQSGSDRILKSMNRRHTAYEY---RQIIDRIRSVR-----PDIAISSDFIVGFPG 341
                +++    ++ + + + T+ E     ++++R  +VR     P+I    +F+ G  G
Sbjct: 328 VAAFGMETADPAVVAANSLKATSEEVFEAIRLVNRFGAVRGANGLPEILPGINFVHGLMG 387

Query: 342 ETDDDFRATMDLVDKIGYA------QAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCL- 394
           ET   F+     + K+         +    +     GTP   M  + DE  K  + L L 
Sbjct: 388 ETKKTFQLNYAFLQKV-LDSGLLLRRINIRQVMAFPGTP---MYGR-DEAAKKHKKLFLD 442

Query: 395 -QKKLREQQVSFNDACV---GQIIE-VLIEKHGKE 424
            ++++R+         V   G ++  V+ E H +E
Sbjct: 443 YKERVRKNIDLPMLRKVVPEGTVLRDVMCEVHDRE 477


>gi|95931014|ref|ZP_01313742.1| Radical SAM [Desulfuromonas acetoxidans DSM 684]
 gi|95132910|gb|EAT14581.1| Radical SAM [Desulfuromonas acetoxidans DSM 684]
          Length = 837

 Score = 65.0 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 53/320 (16%), Positives = 107/320 (33%), Gaps = 37/320 (11%)

Query: 109 VAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDG 168
            A+   ++   R   ++ +  P  +    +  +     +R        +     ++ +D 
Sbjct: 181 HAEENRQQCYDRLKQIDGIYLPHLFEFHYD--DEGHIQERKALDAQIKKVTRRFITDLDS 238

Query: 169 GYNRKRGVTAF---------LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLID 219
                + V  F         + I  GC + C FC   Y       R    +       + 
Sbjct: 239 AIYPDKPVIPFMHTVHDRVAVEIARGCTRGCRFCQAGYIYRPVRERKAETIAKLIDNALK 298

Query: 220 N-GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD--MSDC 276
           + G  E++LL  +          G+      LL  L       R+  +    R   ++D 
Sbjct: 299 HSGYDEVSLLSLSS---------GDYTAIEPLLKHLMARYAEERVAVSLPSLRVGSLTDE 349

Query: 277 LIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFI 336
           LI+    +        L  ++G+DR+   +N+   A +       I ++   + I   F+
Sbjct: 350 LIEEVRKVRK--TGFTLAPEAGTDRLRDVINKGIKADDLLDTARTIYTLGWRL-IKLYFM 406

Query: 337 VGFPGETDDDFRATMDLVDKIGY----------AQAFSFKYSPRLGTPGSNMLEQVDENV 386
           +G P ET DD  A ++L  ++                   + P+  TP      Q+    
Sbjct: 407 MGLPTETRDDLDAIVELARQVKRCAKGTEGGGDVNVAVSTFVPKAHTP-FQWEAQLSIAE 465

Query: 387 KAERLLCLQKKLREQQVSFN 406
             ER   L+  L+ +++   
Sbjct: 466 TVERQHYLRDALQRKKLRLK 485


>gi|117927961|ref|YP_872512.1| radical SAM domain-containing protein [Acidothermus cellulolyticus
           11B]
 gi|117648424|gb|ABK52526.1| Radical SAM domain protein [Acidothermus cellulolyticus 11B]
          Length = 654

 Score = 65.0 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 56/345 (16%), Positives = 111/345 (32%), Gaps = 59/345 (17%)

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
             +++ D     K   + + +  + R       + I  GC + C FC           RS
Sbjct: 245 HTLMNLDEWPYPKRPLVPLAETVHERYS-----VEIFRGCTRGCRFCQAGMITRPVRERS 299

Query: 207 LSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           +  +       +   G  E+ LL   +++     +       +D           + L  
Sbjct: 300 IDTIGAMVDAGLRATGFSEVGLLS--LSSADHSEIGPMAKQLADRYE-----GTNISLSL 352

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
            ++     +  L             L    + G++R+ + +N+  T  +  + +    + 
Sbjct: 353 PSTRVDAFNVDLANEFSRNGR-RSGLTFAPEGGTERMRRVINKMVTEEDLIRTVTT--AY 409

Query: 326 RPDI-AISSDFIVGFPGETDDDFRATMDLVDKIGYA-------------QAFSFKYSPRL 371
           R     +   F+ G P ETD+D  A  DL  K+                      + P+ 
Sbjct: 410 RHGWRRVKLYFMCGLPTETDEDVLAIADLARKV-IDAGRQATGSRDIGCTVSIGAFVPKP 468

Query: 372 GTPGSNMLEQVDENVKAERLLCLQKKLR---------------------EQQVSFNDACV 410
            TP      Q+D      RL  L+ ++R                     E  +S  D  V
Sbjct: 469 HTP-FQWAAQLDHETVDARLAKLRDRIRSDREYGRAIGFRYHDGKPSIVEGLLSRGDRRV 527

Query: 411 GQIIEVLIEKHGKEKGKLVGRSPW--LQSVVLNSKNHNIGDIIKV 453
           G++    IE+  ++ G+  G S        +  ++    G+ + V
Sbjct: 528 GRV----IEQVWRDGGRFDGWSEHFSFDRWMQAAERALAGEPVDV 568


>gi|326406716|gb|ADZ63787.1| putative methyltransferase [Lactococcus lactis subsp. lactis CV56]
          Length = 751

 Score = 65.0 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 32/222 (14%), Positives = 70/222 (31%), Gaps = 16/222 (7%)

Query: 139 LLERARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197
            L+  R  KR  +    ++          D        +   +     C    TFC +P 
Sbjct: 253 YLDDHRNLKRNEIVESKTINSLPPDFDGFDFSKYFTDNLWIPIYTSRACVNKSTFCTIPN 312

Query: 198 TRG-IEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
             G         +VV+    + +  G+   + + +     + K +         +     
Sbjct: 313 ASGGKFRHMPAKKVVENMEVVKEKYGISHFSFVDETFLVPKMKQI-----AKLLIDNEQK 367

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
           +I      R++     D +  L             +   ++S + R+L  M++       
Sbjct: 368 DISWYCETRFSKLLTADTTQIL------RKGGCSNIQFGLESYNQRVLDLMDKNIDIAWI 421

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
              I         I++   F+ GFP ET ++ + T    +++
Sbjct: 422 EPNIINCFEA--GISVHLFFMTGFPTETLEEAKNTYHFANEM 461


>gi|325927427|ref|ZP_08188675.1| Fe-S oxidoreductase [Xanthomonas perforans 91-118]
 gi|325542248|gb|EGD13742.1| Fe-S oxidoreductase [Xanthomonas perforans 91-118]
          Length = 517

 Score = 65.0 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 47/251 (18%), Positives = 75/251 (29%), Gaps = 22/251 (8%)

Query: 142 RARFGKRVVDTDYS---VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
           R   G +  D   S     D  +          R    +  +    GC   C +C  P  
Sbjct: 192 RVHPGAQPPDARLSGLPAWDLVDMPRYRRFWQQRHGHFSLNMAASRGCPFRCNWCAKPIW 251

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258
                 R   +V  E   L      +   +  ++  +    ++            LS+  
Sbjct: 252 GNHYKRRGAEEVAAEMIHLKRAFRPDHIWMADDIFGFHIDWVET-------FAQQLSDAD 304

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           G V   +T     D++     A            +  +SGS RIL  M +     E    
Sbjct: 305 GAV--PFTIQTRADLASE-RMAAALARAGCVEAWIGAESGSQRILDKMTKGTQVGEVIAA 361

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
            +R+ +    I +     +G+ GE  DD  AT  LV +            P  GT     
Sbjct: 362 RERLGTQ--GIRVGFFIQLGYLGEELDDILATRALVTQANPDIIGVSVSYPLPGTKFY-- 417

Query: 379 LEQVDENVKAE 389
                E VK +
Sbjct: 418 -----EEVKNQ 423


>gi|291278589|ref|YP_003495424.1| hypothetical protein DEFDS_0156 [Deferribacter desulfuricans SSM1]
 gi|290753291|dbj|BAI79668.1| conserved hypothetical protein [Deferribacter desulfuricans SSM1]
          Length = 336

 Score = 65.0 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 35/194 (18%), Positives = 76/194 (39%), Gaps = 11/194 (5%)

Query: 185 GCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK 244
           GC K C +C      G+++      V D+    +        +      A+ G   +   
Sbjct: 16  GCPKKCIYCQQNSITGVKLHDFKKDVEDQVNLFLRVKKKWGKI------AFYGGSFNLLP 69

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304
               + LY ++    ++++R +  +P      LI    D    +  + L VQS S+++L+
Sbjct: 70  KDKREFLYKVANSINILKVRVSC-YPSGFDTELINEMKD--NNVEDVELGVQSFSEKVLR 126

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
              R +++ E  +I+  ++    +  +    +VG  GE   D    +D +DK+ +     
Sbjct: 127 LNGRDYSSNEVVKILKLLKQN--NFNVGIQIMVGMFGEEYGDIIQNIDFIDKLKFEYIRI 184

Query: 365 FKYSPRLGTPGSNM 378
           +       T  + +
Sbjct: 185 YPAVIFKDTKLAAL 198


>gi|217076528|ref|YP_002334244.1| Fe-S oxidoreductase family 2 [Thermosipho africanus TCF52B]
 gi|217036381|gb|ACJ74903.1| Fe-S oxidoreductase family 2 [Thermosipho africanus TCF52B]
          Length = 592

 Score = 65.0 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 44/244 (18%), Positives = 91/244 (37%), Gaps = 25/244 (10%)

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           + D D ++    + L  V   ++R     A + I  GC + C FC   Y       RS+ 
Sbjct: 226 IEDLDKAIVPIKQILPNVQSIHDR-----AVIEISRGCTRGCRFCHAGYVYRPVRQRSVE 280

Query: 209 QVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS--EIKGLVRLRY 265
            +V+ A+K++   G  E++ L  +   +            + ++  +    I+  + +  
Sbjct: 281 NIVENAKKMLKETGYEELSFLSLSAMDY---------TAINQIVDKIISYSIENKISISI 331

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
            ++    ++  ++     +      + L  ++GS  +   +N+     E      + +  
Sbjct: 332 PSTRVDALNIEIMSKIASVRK--RGITLAPEAGSQIMRDKINKNINFEEIYNSAKKAKEA 389

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS-----PRLGTPGSNMLE 380
             +  I   F+VGF GE D D      L+ +I   +      S     P+  TP      
Sbjct: 390 GWN-RIKLYFMVGFDGEKDSDIEDIGRLLIEIKKLKYRDITASVNLLVPKPHTPMQFAKL 448

Query: 381 QVDE 384
           Q+ E
Sbjct: 449 QLPE 452


>gi|319944904|ref|ZP_08019166.1| lipoic acid synthetase [Lautropia mirabilis ATCC 51599]
 gi|319741474|gb|EFV93899.1| lipoic acid synthetase [Lautropia mirabilis ATCC 51599]
          Length = 387

 Score = 65.0 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 37/244 (15%), Positives = 85/244 (34%), Gaps = 12/244 (4%)

Query: 125 NVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQE 184
           +++  P    +    L    +  + +  D+ +    E  S  + G    +G  +F+ + +
Sbjct: 86  DMLRKPDWIRKPAPKLGSRFYEMKEILRDHKLHTVCEEASCPNIGECFGKGTASFMIMGD 145

Query: 185 GCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK 244
            C + C FC V + R   +     +  + A  +    +  + +   +    R    DG  
Sbjct: 146 KCTRRCPFCDVGHGRPDPL--DTEEPYNLAMSVKALRLKYVVITSVD----RDDLRDGGA 199

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRD-MSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
             ++D +  + E     ++       R  +   L         +M +    V     R+ 
Sbjct: 200 GHYADCIRMIREHSPSTQIEVLVPDFRGRLDKALDILEATPPDVMNHNLETV----PRLY 255

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           K            +++   ++ +PD+   S  +VG  GETD++    M  +      +  
Sbjct: 256 KQARPGANYEHSLKLLKDFKARKPDVPSKSGLMVGL-GETDEEILQVMRDMRAHDIDRLT 314

Query: 364 SFKY 367
             +Y
Sbjct: 315 IGQY 318


>gi|15673150|ref|NP_267324.1| hypothetical protein L180742 [Lactococcus lactis subsp. lactis
           Il1403]
 gi|12724133|gb|AAK05266.1|AE006349_1 hypothetical protein L180742 [Lactococcus lactis subsp. lactis
           Il1403]
          Length = 752

 Score = 65.0 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 32/222 (14%), Positives = 70/222 (31%), Gaps = 16/222 (7%)

Query: 139 LLERARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197
            L+  R  KR  +    ++          D        +   +     C    TFC +P 
Sbjct: 254 YLDDHRNLKRNEIVESKTINSLPPDFDGFDFSKYFTDNLWIPIYTSRACVNKSTFCTIPN 313

Query: 198 TRG-IEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
             G         +VV+    + +  G+   + + +     + K +         +     
Sbjct: 314 ASGGKFRHMPAKKVVENMEVVKEKYGISHFSFVDETFLVPKMKQI-----AKLLIDNEQK 368

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
           +I      R++     D +  L             +   ++S + R+L  M++       
Sbjct: 369 DISWYCETRFSKLLTADTTQIL------RKGGCSNIQFGLESYNQRVLDLMDKNIDIAWI 422

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
              I         I++   F+ GFP ET ++ + T    +++
Sbjct: 423 EPNIINCFEA--GISVHLFFMTGFPTETLEEAKNTYHFANEM 462


>gi|167561363|ref|ZP_02354279.1| lipoyl synthase [Burkholderia oklahomensis EO147]
 gi|167568594|ref|ZP_02361468.1| lipoyl synthase [Burkholderia oklahomensis C6786]
          Length = 329

 Score = 65.0 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 79/221 (35%), Gaps = 12/221 (5%)

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
           + +  ++++    E  S  + G    +G   F+ + + C + C FC V + R   +    
Sbjct: 64  KTILREHNLHTVCEEASCPNIGECFGKGTATFMIMGDKCTRRCPFCDVGHGRPDPL--DA 121

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
            +  + AR +    +  + +   +    R    DG    F + +  + E     R+   T
Sbjct: 122 DEPKNLARTIAALKLKYVVITSVD----RDDLRDGGAGHFVECIREVREQSPQTRIEILT 177

Query: 268 SHPRD-MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
              R  +   L   +     +M +    V     R+ K            +++   +++ 
Sbjct: 178 PDFRGRLDRALAILNAAPPDVMNHNLETV----PRLYKEARPGSDYAHSLKLLKDFKALH 233

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           PD+A  S  +VG  GET ++    M  +           +Y
Sbjct: 234 PDVATKSGLMVGL-GETPEEILQVMRDLRAHDVDMLTIGQY 273


>gi|117922306|ref|YP_871498.1| hypothetical protein Shewana3_3874 [Shewanella sp. ANA-3]
 gi|117614638|gb|ABK50092.1| Radical SAM N-terminal domain protein [Shewanella sp. ANA-3]
          Length = 781

 Score = 65.0 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 54/339 (15%), Positives = 108/339 (31%), Gaps = 62/339 (18%)

Query: 116 EILRRSPIVNVVVGPQTYYRLPELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNR-- 172
           E        + ++  +        L +    + V V+      +  E  ++ D  Y R  
Sbjct: 301 EDKYLYAHASRILHQEQNPGCARALFQPHGDRGVWVNPPAWPLNTDEMDAVFDLPYKRVP 360

Query: 173 -----KRGVTAF------LTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDN 220
                K  + A+      + I  GC   C+FC +    G  I SRS   ++ E + + D 
Sbjct: 361 HPAYGKDKIPAYDMIKTSINIMRGCFGGCSFCSITEHEGRIIQSRSQESIIKEIKDIQDK 420

Query: 221 --GVCEIT--LLGQNVNAWR----------------------GKGLDGEKCTFSDLLYSL 254
             G   +   L G   N +R                         L  +     DL  + 
Sbjct: 421 VPGFTGVISDLGGPTANMYRLGCTSEKAEKTCRRLSCVYPSICGHLGTDHKHTIDLYRAA 480

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRRHTA 312
             + G+ ++   +    D++        +L    +  YL +  +   +  L  M +    
Sbjct: 481 RAVPGIKKILIASGVRYDLAIEDPAYVKELVQHHVGGYLKIAPEHTEEGPLSKMMKPGMG 540

Query: 313 YE--YRQIIDRI-RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY--AQAFSFKY 367
               ++++ D+  +    +  +   FI   PG TD+D       + +  +   Q  +F  
Sbjct: 541 AYDKFKELFDKYSKEAGKEQFLIPYFISAHPGTTDEDMLNLALWLKERKFKLDQVQNFYP 600

Query: 368 SPRLG------TPGSNMLE--------QVDENVKAERLL 392
           SP         T  +++           V +  +  RL 
Sbjct: 601 SPMANATTIYHTELNSLKNVKHTSEVVPVPKKGRQRRLH 639


>gi|257059923|ref|YP_003137811.1| radical SAM protein [Cyanothece sp. PCC 8802]
 gi|256590089|gb|ACV00976.1| Radical SAM domain protein [Cyanothece sp. PCC 8802]
          Length = 530

 Score = 65.0 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 47/309 (15%), Positives = 98/309 (31%), Gaps = 30/309 (9%)

Query: 72  IREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ 131
           +      +++  +G IR   +   +   +  ++V G       E++    P   +V   +
Sbjct: 111 VTTAYYGELWRNIGLIRRGLSRAKQYHPEARLMVGGGAVSVFYEQLKSELPQGTIVSVGE 170

Query: 132 TYYRLPELLERARFGKRVVDTDYSVE--------------------DKFERLSIVDGGYN 171
               L +LL    F +         +                    D  + +      Y 
Sbjct: 171 GETLLEKLLRDQDFSRERCYIVGESDPRQRLIHEEPTPLEKTACNYDYIQSIWPEFDYYF 230

Query: 172 RKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR-SLSQVVDEARKLIDNGVCEITLLGQ 230
           ++      +  + GC   C +CV     G ++      +VV E R+L D G+        
Sbjct: 231 QENDFYIGVQTKRGCPHNCCYCVYTVVEGKQVRINPADEVVKEMRQLYDRGIRNFWFTDA 290

Query: 231 NVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY-TTSHPRDMSDCLIKAHGDLDVLMP 289
                R    D E      L   L    G+  + +       +++  L          M 
Sbjct: 291 QFIPARRFIQDAE----QLLEKILDS--GMTDIHWAAYIRADNLTPNLCDLMVKTG--MN 342

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           Y  + + SGS  +++ M   +      Q    +++   +  +S ++      ET D  R 
Sbjct: 343 YFEIGITSGSQELVRKMRMGYNLRTVLQNCRDLKAAGFNDLVSVNYSFNVIDETFDTIRQ 402

Query: 350 TMDLVDKIG 358
           T+    ++ 
Sbjct: 403 TIAYHRELE 411


>gi|73669597|ref|YP_305612.1| hypothetical protein Mbar_A2101 [Methanosarcina barkeri str.
           Fusaro]
 gi|72396759|gb|AAZ71032.1| conserved hypothetical protein [Methanosarcina barkeri str. Fusaro]
          Length = 575

 Score = 65.0 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 49/285 (17%), Positives = 98/285 (34%), Gaps = 40/285 (14%)

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLT----IQEGCDKF--CTFCVVPYTR 199
               VD  +    +  R         R+     +         GC +   C+FC  P+  
Sbjct: 167 NPEAVDHRFRTTAEIGRWGPRGAFLIRQHPDYPYCMCELETYRGCGRHVHCSFCTEPF-Y 225

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQ-NVNAWRGKGLDG-----EKCTFSDLLY- 252
           G    R +  V+ EA  L  +G     +  Q ++ ++ GK   G     +      L   
Sbjct: 226 GASDYRPIDDVISEASVLYSHGARYFRIGRQPDLFSYHGKDAGGPVPKPDPVAIERLYRG 285

Query: 253 ------SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306
                  LS +        T +   + S+ ++K               ++S    ++++ 
Sbjct: 286 IRNSAPELSVLHMDNANPITLATYPEESEQVLKTIIKYHTAGDVAAFGMESADRAVIEAN 345

Query: 307 NRRHTAYEY---RQIIDRIRSVR-----PDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           + + T+ E     ++++R+ +VR     P+I    +F+ G  GE+   F+   D + K+ 
Sbjct: 346 SLKATSEEVFEAIKLVNRLGAVRGVNGLPEILPGINFVHGLMGESRKTFQLNYDFLKKV- 404

Query: 359 YA------QAFSFKYSPRLGTPGSNMLEQVDENVK-----AERLL 392
                   +    +     GTP     E   ++ K      ER+ 
Sbjct: 405 LDSGLLLRRINIRQVMAFPGTPMYGKDEAARKHKKLFLNYKERVR 449


>gi|218883961|ref|YP_002428343.1| Radical SAM domain protein [Desulfurococcus kamchatkensis 1221n]
 gi|218765577|gb|ACL10976.1| Radical SAM domain protein [Desulfurococcus kamchatkensis 1221n]
          Length = 521

 Score = 65.0 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 69/355 (19%), Positives = 129/355 (36%), Gaps = 41/355 (11%)

Query: 153 DYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDK----FCTFCVVPYTRGIEISRS 206
           DY + DK  RL   IV    N  R +   +    GC +     C+FC+ P      + RS
Sbjct: 164 DYELADKAFRLGAKIVLQHPNYGRNLVVEIETYRGCSRWITGGCSFCIEPRHGRPLM-RS 222

Query: 207 LSQVVDEARKLIDNGVCEITLLGQ-NVNAWRGKGLD------GEKCTFSDLLYSLSEI-K 258
           L  +++E   L   GV  I L  Q ++ A+  + +        +      L   +  +  
Sbjct: 223 LKGIIEEVEALYRLGVRHIRLGKQPDILAYMARDIGKQVFPRPDPEVIERLFQGIRNVAP 282

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY------LHLPVQSGSDRILKSMNRRHTA 312
           GL+ L     +P  +     ++   L  ++ Y        L ++S  ++++   N +   
Sbjct: 283 GLITLHIDNVNPGTIVHYPEESIRILKTIVKYHTPGDVAALGIESFDEKVVNINNLKVYP 342

Query: 313 YEYRQIIDRIRSV--------RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
            E  + I  I  V         P +    + I G PGE+ + +   ++ + KI       
Sbjct: 343 DEALEAIRLINRVGRERGWNGMPHLLPGINLIYGLPGESRNTYHMNLEYLTKIIREGLMV 402

Query: 365 FKYSPR-----LGTPGSNMLEQVDENVKAER-LLCLQ-KKLREQQVSFNDACV---GQII 414
            + + R       TP     ++V+  +K  R L      ++ +         +   G I+
Sbjct: 403 RRLNIRRVAVLENTPLWLRRDEVEYLLKKYRDLYRFHRARVMQLFDKIMLKRILPPGTIL 462

Query: 415 EVLIEKHGKEKGKLVGRSPW-LQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
             LI +  K     + R P      V       +  I+ VR+      ++ GE +
Sbjct: 463 YYLIAEK-KSSSHTIARFPGSYPIAVKVKGEIPLWSILAVRVKRYSAKSVSGEPI 516


>gi|212639840|ref|YP_002316360.1| Radical SAM superfamily enzyme [Anoxybacillus flavithermus WK1]
 gi|212561320|gb|ACJ34375.1| Radical SAM superfamily enzyme [Anoxybacillus flavithermus WK1]
          Length = 588

 Score = 65.0 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 50/297 (16%), Positives = 97/297 (32%), Gaps = 28/297 (9%)

Query: 95  IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER------------ 142
            K    + +VV G     +    L R P  + +V  +      +LL              
Sbjct: 91  KKVHPTVTIVVGGPEVSYDVAYWLERVPEFDYIVIGEGEETFKQLLTALQNGDDVANIAG 150

Query: 143 ---ARFGKRVVDTDYSVEDKFERLSIVDGGY--NRKRGVTAFLTIQEGCDKFCTFCVVPY 197
               + GK +++   +  +     S                ++    GC   C FC+   
Sbjct: 151 LAFHQDGKAIINPQRNKMNLANMPSPFRFPEDIPHLSKRVTYVETSRGCPFSCQFCLSSI 210

Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257
             G        ++ ++ R L+ +G   I  + +  N  R   +D  +    +       +
Sbjct: 211 EVG-VRYFDREKIKEDLRYLMKHGAKVIKFVDRTFNISRSYAMDMFQFLIDEH------V 263

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAH-GDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
            G+V     T+    M   +I+    +    +    + VQS +D + K + R+    +  
Sbjct: 264 PGVVFQFEITADI--MRPEVIEFLNKEAPPGLFRFEIGVQSTNDEVNKLVMRKQNFEKLT 321

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
           + +  ++     IA   D I G P E    FR T + V  +   +          GT
Sbjct: 322 RTVTMVKQG-GKIAQHLDLIAGLPEEDYTSFRKTFNDVFALRPEELQLGFLKMLRGT 377


>gi|166712493|ref|ZP_02243700.1| Mg-protoporphyrin IX monomethyl ester oxidative cyclase
           [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 506

 Score = 65.0 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 47/267 (17%), Positives = 79/267 (29%), Gaps = 22/267 (8%)

Query: 126 VVVGPQTYYRLPELLERARFGKRVVDTDYS---VEDKFERLSIVDGGYNRKRGVTAFLTI 182
            + G          + R   G +  D   S     D  +          R    +  +  
Sbjct: 176 WLAGVAQIATSQPAVARVHPGAQPPDARLSGLPAWDLVDMPRYQRFWQQRHGYFSLNMAA 235

Query: 183 QEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG 242
             GC   C +C  P        R    V  E   L  +   +   +  ++  +    ++ 
Sbjct: 236 SRGCPFRCNWCAKPIWGNHYKRRGAEDVAAEMIHLKRSFQPDHIWMADDIFGFHIDWVEA 295

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
                      LS+  G   + +T     D++   + A            +  +SGS RI
Sbjct: 296 -------FAQRLSDADGA--IPFTIQTRADLASERMAAALARAGCAEAW-IGAESGSQRI 345

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           L  M +     E     +R+ +    I +     +G+ GE  DD  AT  LV +      
Sbjct: 346 LDKMTKGTQVGELIAARERLGAQ--GIRVGFFIQLGYLGEELDDILATRALVTQANPDII 403

Query: 363 FSFKYSPRLGTPGSNMLEQVDENVKAE 389
                 P  GT          E VK +
Sbjct: 404 GVSVSYPLPGTKFY-------EEVKNQ 423


>gi|46200049|ref|YP_005716.1| lipoyl synthase [Thermus thermophilus HB27]
 gi|55980208|ref|YP_143505.1| lipoyl synthase [Thermus thermophilus HB8]
 gi|81567559|sp|Q72GV1|LIPA_THET2 RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|81600563|sp|Q5SLQ4|LIPA_THET8 RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|46197677|gb|AAS82089.1| lipoic acid synthetase [Thermus thermophilus HB27]
 gi|55771621|dbj|BAD70062.1| lipoic acid synthase [Thermus thermophilus HB8]
          Length = 323

 Score = 65.0 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 35/204 (17%), Positives = 68/204 (33%), Gaps = 11/204 (5%)

Query: 173 KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNV 232
             G    + + + C + C FC V       +     +    A  +   GV  + L   + 
Sbjct: 82  THGTLTVMILGDICTRACKFCAVHTGNPKGL-VDPEEPRRVAEAIARMGVRYVVLTSVD- 139

Query: 233 NAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLH 292
              R    DG    F+  + ++ E    V +   T   +     +         +     
Sbjct: 140 ---RDDLPDGGASHFAATIRAIKERAPGVLVEALTPDFQGDLKAVETVLAANPEVYAQ-- 194

Query: 293 LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352
             +++      K  + R    +  +++   + VRPDI   S  ++G  GET+++    M 
Sbjct: 195 -NLETVRRLTPKVRDPRAGYEQTLKVLAHAKKVRPDILTKSSLMLGL-GETEEEILEAMR 252

Query: 353 LVDKIGYAQAFSFKYSPRLGTPGS 376
            +   G       +Y  R  TP  
Sbjct: 253 DLRAAGVDILTLGQYL-RP-TPAH 274


>gi|294673365|ref|YP_003573981.1| oxygen-independent coproporphyrinogen III oxidase [Prevotella
           ruminicola 23]
 gi|294473953|gb|ADE83342.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Prevotella ruminicola 23]
          Length = 375

 Score = 65.0 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 44/235 (18%), Positives = 87/235 (37%), Gaps = 20/235 (8%)

Query: 186 CDKFCTFCVVPYTRG-IEISRSLSQVVDEARKL-------IDNGVCEITLLGQNVNAWRG 237
           C   C +C    T G     R +  +  E +            G      LG    +   
Sbjct: 11  CSSRCVYCGFYSTTGLALRERYVDALCQEIKMRSLPTNPPQKEGSLGTIYLGGGTPSQLT 70

Query: 238 KGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQS 297
                +     D +Y  ++++    +     +P D++  L  A   L +    + +  Q+
Sbjct: 71  IP---QLRRIFDAIYIYNKVENDAEVTIEV-NPDDVTPELAAALQQLPI--NRVSMGAQT 124

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
            +D  L  + RRH++ +  Q +  +R       IS D + GFP +T ++++A +D   ++
Sbjct: 125 FNDERLHFLRRRHSSAQVHQAVATLRQAGFQ-NISIDLMYGFPNQTLEEWQADIDEALQL 183

Query: 358 GYAQAFSFKYSPRLGTPGSNMLEQ-----VDENVKAERLLCLQKKLREQQVSFND 407
                 ++      GTP   +LEQ     +DE ++ +    L   L        +
Sbjct: 184 NVEHISTYCLMYEEGTPLYRLLEQGKVAEIDEELERKMYFTLINSLESAGYEHYE 238


>gi|289806560|ref|ZP_06537189.1| hypothetical protein Salmonellaentericaenterica_19837 [Salmonella
          enterica subsp. enterica serovar Typhi str. AG3]
          Length = 51

 Score = 65.0 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 25/43 (58%)

Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLN 68
          +    S GC  N+ DS R+     ++GY+ V   DDAD++++N
Sbjct: 9  KIGFVSLGCPKNLVDSERILTELRTEGYDVVPHYDDADMVIVN 51


>gi|254251309|ref|ZP_04944627.1| Lipoate synthase [Burkholderia dolosa AUO158]
 gi|124893918|gb|EAY67798.1| Lipoate synthase [Burkholderia dolosa AUO158]
          Length = 330

 Score = 65.0 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 79/221 (35%), Gaps = 12/221 (5%)

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
           + +  ++++    E  S  + G    +G   F+ + + C + C FC V + R   +    
Sbjct: 65  KTILREHNLHTVCEEASCPNIGECFGKGTATFMIMGDKCTRRCPFCDVGHGRPDPL--DA 122

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
            +  + AR +    +  + +   +    R    DG    F + +  +       R+   T
Sbjct: 123 DEPKNLARTIAALKLKYVVITSVD----RDDLRDGGAGHFVECIREVRAQSPETRIEILT 178

Query: 268 SHPRD-MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
              R  +   L   +     +M +    V     R+ K            +++   +++ 
Sbjct: 179 PDFRGRLDRALSILNAAPPDVMNHNLETV----PRLYKEARPGSDYAHSLKLLKDFKALH 234

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           PD+A  S  +VG  GET+++    M  +           +Y
Sbjct: 235 PDVATKSGLMVGL-GETEEEILQVMRDLRAHDVDMLTIGQY 274


>gi|1125024|dbj|BAA08420.1| fortimicin KL1 methyltransferase [Micromonospora olivasterospora]
          Length = 553

 Score = 65.0 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 37/205 (18%), Positives = 78/205 (38%), Gaps = 23/205 (11%)

Query: 177 TAFLTIQEGCDKFCTFCVVPYTRG-IEISRSLSQVVDEARKLI-DNGVCEITLLGQNVNA 234
           TA L    GC   C+FC V  T G    +R+   VVDE    + ++G+    +   N   
Sbjct: 234 TATLITSRGCPFSCSFCTVHATVGKKFRARAPENVVDEIEHYVTEHGIRRFFIEDDNFTF 293

Query: 235 WRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT-SHPRDMSDCLIKAHGDLDVLMPYLHL 293
                   +     ++  +++     V L          +   L+            L L
Sbjct: 294 --------DIARVHEICRAITRRGLDVELHLPNGMTVVKLDKPLVDDMAAAG--FQSLFL 343

Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR--PDIAISSDFIVGFPGETDDDF-RAT 350
            +++   + L+ + +  T+    + ++    +     I + +  IVG  G+T  +  R +
Sbjct: 344 GLETTDVKRLRQIRKGFTS---LEKVNAGAGLFTDHGITVGASLIVGLLGQTPAEVARDS 400

Query: 351 MDLVDK-IGYAQAFSFKYSPRLGTP 374
           ++L+   I +   ++  + P  G+P
Sbjct: 401 INLMLAGIRF---WTNPFYPIPGSP 422


>gi|303239516|ref|ZP_07326042.1| amino acid adenylation domain protein [Acetivibrio cellulolyticus
           CD2]
 gi|302592894|gb|EFL62616.1| amino acid adenylation domain protein [Acetivibrio cellulolyticus
           CD2]
          Length = 2129

 Score = 65.0 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 32/189 (16%), Positives = 70/189 (37%), Gaps = 15/189 (7%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
           +    GC   C +C         + R+   + DE      NGV    ++    N      
Sbjct: 637 IQTTRGCPYKCLYCH-KIWSKFHVRRTAQSIFDEIEYYYRNGVSNFAVIDDCFNLDM--- 692

Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM-SDCLIKAHGDLDVLMPYLHLPVQSG 298
                    +L   + + K  ++L +      D+ +   I    +       ++L +++ 
Sbjct: 693 -----TNSRELFKLIIKNKLRIQLFFPNGLRGDILTPDYIDLMVEAGT--RGVNLSLETA 745

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           S R+ K + +     +++ ++D   S   +I +    + GFP ET+++   T++ +  I 
Sbjct: 746 SPRLQKLLKKDLDLDKFKGVVDYFASQHSNIILEMATMHGFPTETEEEAMMTLNFIKDIK 805

Query: 359 YAQAFSFKY 367
                 F Y
Sbjct: 806 ---WLHFPY 811


>gi|206890567|ref|YP_002249509.1| biotin synthase family enzyme [Thermodesulfovibrio yellowstonii DSM
           11347]
 gi|206742505|gb|ACI21562.1| biotin synthase family enzyme [Thermodesulfovibrio yellowstonii DSM
           11347]
          Length = 330

 Score = 65.0 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 31/207 (14%), Positives = 67/207 (32%), Gaps = 18/207 (8%)

Query: 175 GVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL--SQVVDEARKLIDNGVCEITLLGQNV 232
            + A +     C   C FC +           +   ++V  A + +  G   I L     
Sbjct: 51  HLRAIIEFSNYCKCNCLFCGIRRENRKLPRYRMKEEEIVKVATEAVKEGFKTIVLQS--- 107

Query: 233 NAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLH 292
               G+         S ++  + ++   V L        D    L +A  D         
Sbjct: 108 ----GEEPFWNAERLSKVVREIKKLNVAVTLSVGELSYNDY-VVLREAGADR------YL 156

Query: 293 LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352
           L  ++  +++ + +    T     Q +  ++ +       S  IVG PG++ +     + 
Sbjct: 157 LKFETSDEKLFRRLKPDTTLDRRIQCLRWLKKL--GYETGSGIIVGLPGQSIESLAEDIA 214

Query: 353 LVDKIGYAQAFSFKYSPRLGTPGSNML 379
           L+ ++         + P   TP ++  
Sbjct: 215 LMKELELDMIGIGPFIPHPDTPLTSYP 241


>gi|78043713|ref|YP_359225.1| radical SAM domain-containing protein [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|77995828|gb|ABB14727.1| radical SAM domain protein [Carboxydothermus hydrogenoformans
           Z-2901]
          Length = 621

 Score = 65.0 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 49/287 (17%), Positives = 91/287 (31%), Gaps = 47/287 (16%)

Query: 162 RLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN- 220
            L      Y       A + I  GC + C FC           ++   V+ EA K+++  
Sbjct: 240 SLPSPIVPYLDIVHNRAMVEIMRGCSRGCRFCQAGMIYRPVREKTPELVLAEAEKIMEKT 299

Query: 221 GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE--IKGLVRLRYTTSHPRDMSDCLI 278
           G  EI+L   +          G+     ++   L +   +  V +   +      +  L 
Sbjct: 300 GYEEISLASLSS---------GDYPYIREVAKKLLDKYQEAGVNISLPSLRIDTFAVDLA 350

Query: 279 KAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVG 338
                +      L    ++G+ R+   +N+  T  +    +          AI   F++G
Sbjct: 351 SELQRVRKA--TLTFAPEAGTQRMRDIINKGVTEEDLINTVKAAFKAGWQ-AIKLYFMIG 407

Query: 339 FPGETDDDFRATMDL--------VDKIGYAQ------AFSFKYSPRLGTPGSNMLEQVDE 384
            P ETD+D    + L        V +    +           + P+  TP    L  +  
Sbjct: 408 LPYETDEDVAGIIHLAQKVADIGVKEGRVPRGRLKVTVSVSNFVPKPHTP-FQWLGIISA 466

Query: 385 NVKAERLLCLQKKLR-----------------EQQVSFNDACVGQII 414
                R   L+K  +                 E  +S  D  +G++I
Sbjct: 467 EEIKRRQGILEKLAKKDRRLSLKMHDYRTSLLEAALSRADRRIGRVI 513


>gi|239931354|ref|ZP_04688307.1| coproporphyrinogen III oxidase [Streptomyces ghanaensis ATCC 14672]
 gi|291439726|ref|ZP_06579116.1| coproporphyrinogen III oxidase [Streptomyces ghanaensis ATCC 14672]
 gi|291342621|gb|EFE69577.1| coproporphyrinogen III oxidase [Streptomyces ghanaensis ATCC 14672]
          Length = 413

 Score = 65.0 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 50/241 (20%), Positives = 86/241 (35%), Gaps = 25/241 (10%)

Query: 186 CDKFCTFCVV-PYTRGIEI-------SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG 237
           C   C +C    YT            SR      + A  L D       +LG +    R 
Sbjct: 42  CATRCGYCDFNTYTATELRGTGGVLASRD-----NYAETLTDEIRLARKVLGDDPREVRT 96

Query: 238 KGLDGEKCTFS---DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKA--HGDLDVL-MPYL 291
             + G   T     DL+  L  I+    L        + +   +       L       +
Sbjct: 97  VFVGGGTPTLLAADDLVRMLGAIREEFGLAADAEVTTEANPESVDPAYLATLRAGGFNRI 156

Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351
              +QS    +LK ++R HT       +   R+   +  ++ D I G PGE+DDD+RA++
Sbjct: 157 SFGMQSARQHVLKVLDRIHTPGRPEACVAEARAAGFE-HVNLDLIYGTPGESDDDWRASL 215

Query: 352 DLVDKIGYAQAFSFKYSPRLGTPGSN--MLEQVD---ENVKAERLLCLQKKLREQQVSFN 406
           D     G     ++      GT  +      +V    ++V A+R L  ++ L     ++ 
Sbjct: 216 DAALGAGPDHVSAYALIVEEGTQLARRIRRGEVPTTDDDVHADRYLIAEETLSAAGFAWY 275

Query: 407 D 407
           +
Sbjct: 276 E 276


>gi|146417368|ref|XP_001484653.1| conserved hypothetical protein [Meyerozyma guilliermondii ATCC
           6260]
          Length = 385

 Score = 65.0 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 41/215 (19%), Positives = 84/215 (39%), Gaps = 12/215 (5%)

Query: 156 VEDKFERLSIVDGGYNRKRGVTAFLTIQ-EGCDKFCTFCVVPYTRGIEISRSLSQVVDEA 214
           V ++ +  +I +    +K   TA + +  + C + C FC V  +R       +    + A
Sbjct: 106 VCEEAKCPNIGECWGGKKSEATATIMLMGDTCTRGCRFCSVKTSRKPAPPDPME-PENTA 164

Query: 215 RKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPR-DM 273
             +   G+  + L   +    R   +DG     ++ +  + E    + +       R D+
Sbjct: 165 EAISRWGLGYVVLTTVD----RDDLVDGGAHHLAETVRKIKEKAPQILVEVLGGDFRGDL 220

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
              L+ A   LDV        +++  D      +RR T  +   I+ R +  +P +   +
Sbjct: 221 DMALVLARSGLDVYAHN----IETVEDLTPHVRDRRATYRQSLSILQRAKETKPSLVTKT 276

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
             ++GF GETD+    T+  + +I        +Y 
Sbjct: 277 SMMLGF-GETDEQIMQTLRDLREIKCDVVTFGQYM 310


>gi|186682840|ref|YP_001866036.1| radical SAM domain-containing protein [Nostoc punctiforme PCC
           73102]
 gi|186465292|gb|ACC81093.1| Radical SAM domain protein [Nostoc punctiforme PCC 73102]
          Length = 532

 Score = 65.0 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 51/342 (14%), Positives = 108/342 (31%), Gaps = 38/342 (11%)

Query: 62  ADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRS 121
           AD+++L+   +      +    L +I+  K          LV V G    +   E+    
Sbjct: 66  ADVVILSAMIV------QKQDLLEQIQEAKKRGK------LVAVGGPYPTSVPHEVENV- 112

Query: 122 PIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGV-TAFL 180
              + ++  +    LP  +E  + G+       + +       I               +
Sbjct: 113 -GADFLILDEGEITLPMFIEAIQRGETSGTFRATEKPDVTSTPIPRFDLLELNAYDMMSV 171

Query: 181 TIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
               GC   C FC +    G +  +++ +Q++ E   L + G      +  +        
Sbjct: 172 QFSRGCPFQCEFCDIIVLYGRKPRTKAPAQLLAELDYLYELGWRRGVFMVDD-------N 224

Query: 240 LDGEKCTFSDLLYSL----SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPV 295
             G K     LL  L    +E K   R     S        +++   +       + L +
Sbjct: 225 FIGNKRNVKLLLKELKVWMAEHKYPFRFDTEASIDLAQDAEMLELMVECG--FSAVFLGI 282

Query: 296 QSGSDRILKSMNRR-HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           ++  +  L+   +  +T     + ++ I  ++  +   + FI+GF GE        +   
Sbjct: 283 ETPDEDSLQMTKKFQNTRSSLTEAVETI--IKAGLRPMAGFIIGFDGEKAGAGDRIVRFA 340

Query: 355 DKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQK 396
           ++                T   + L+      K  RL   Q 
Sbjct: 341 EQAAIPSTTFAMLQALPNTALWHRLK------KEGRLRENQD 376


>gi|312622597|ref|YP_004024210.1| Radical SAM domain-containing protein [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312203064|gb|ADQ46391.1| Radical SAM domain protein [Caldicellulosiruptor kronotskyensis
           2002]
          Length = 341

 Score = 65.0 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 42/213 (19%), Positives = 75/213 (35%), Gaps = 17/213 (7%)

Query: 173 KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV-VDEARKLIDNGVCEITLLGQN 231
           K  +      Q  C   C FC         IS    +V +D  ++ I+ G+  I L  + 
Sbjct: 2   KHRILPIFIPQYACPFNCIFC-----NQKTISGEKEEVSLDRIKRQIEQGLK-INLDEEV 55

Query: 232 VNAWRGKGLDGEKCTFSDLLYSLS---EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLM 288
             A+ G         F   L  L+   E    +R+        +    L+K +      +
Sbjct: 56  ELAYYGGNFTAIDIDFQKKLLELANSFERIKSIRISTRPDCIDEERLILLKFYN-----V 110

Query: 289 PYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFR 348
             + L +QS  D +L +  R HTA   +  ++ I+       +    +VG P  T +   
Sbjct: 111 RTIELGIQSMFDHVLNACARGHTAQHSKNAMEMIKKF--GFLLGVQVMVGLPKSTPEMDI 168

Query: 349 ATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
            T  ++       A  +      GT  + M ++
Sbjct: 169 ETAKILTSFSPDIARIYPTLVIEGTYLAKMYQK 201


>gi|237749083|ref|ZP_04579563.1| Mg-protoporphyrin IX monomethyl ester oxidative cyclase
           [Oxalobacter formigenes OXCC13]
 gi|229380445|gb|EEO30536.1| Mg-protoporphyrin IX monomethyl ester oxidative cyclase
           [Oxalobacter formigenes OXCC13]
          Length = 512

 Score = 65.0 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 38/196 (19%), Positives = 64/196 (32%), Gaps = 6/196 (3%)

Query: 179 FLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK 238
           ++    GC   C FC+    +           +DE  KL   G      + +  N    +
Sbjct: 178 YVEASRGCPFRCEFCLSSLDKTAWA-FDTDLFLDEMEKLYRRGARNFKFVDRTFNLNIKR 236

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
            L          L  L +        +    P  + D L +A          L + VQS 
Sbjct: 237 SLQ----IIRFFLKKLEDAPMDPVFAHFELVPDHLPDALKEAILKFPEGSLQLEIGVQSF 292

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           +  +   ++R+    +  + I  +R       + +D IVG PGE  D F    + +  I 
Sbjct: 293 NTDVQNLISRKQDNEKSEKNIRWLREHT-HAHMHADLIVGLPGENIDSFAKGFNRLVDID 351

Query: 359 YAQAFSFKYSPRLGTP 374
             +          GTP
Sbjct: 352 PHEIQVGILKRLRGTP 367


>gi|172036197|ref|YP_001802698.1| hypothetical protein cce_1282 [Cyanothece sp. ATCC 51142]
 gi|171697651|gb|ACB50632.1| UPF0004-containing protein [Cyanothece sp. ATCC 51142]
          Length = 518

 Score = 65.0 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 54/336 (16%), Positives = 106/336 (31%), Gaps = 33/336 (9%)

Query: 54  ERVNSM-DDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQA 112
           E   +  D A++++ +   +      +    L +I+  K           V V G  A +
Sbjct: 57  EVTEAEWDWAEIVIFSAMIV------QKQDLLAQIKEAKLRGK------CVAVGGPYATS 104

Query: 113 EGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNR 172
              E+       + +V  +    LP  +E  + G+         +       I       
Sbjct: 105 VPSEVQAA--GADFLVLDEGEITLPLFVEALQRGETQGTIRTPEKPDVTLTPIPRYDLLE 162

Query: 173 KRGV-TAFLTIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVCEITLLGQ 230
                +  +    GC   C FC +    G +  +++ +Q++ E   L   G      +  
Sbjct: 163 LDAYDSMSVQFSRGCPFQCEFCDIIILYGRKPRTKTPTQLLKELDYLYRLGWRRGVFMVD 222

Query: 231 NVNAWRGKGLDGEKCTFSDLLYSL----SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV 286
           +          G K     LL  L     E +   R     S        L++   + + 
Sbjct: 223 D-------NFIGNKRNVKLLLKELKVWQQEHQYPFRFNTEASVDLAQDAELMELMVEAN- 274

Query: 287 LMPYLHLPVQSGSDRILKSMNRR-HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDD 345
               + L +++  +  LK   +  +T       ID +  +R  +   + FI+GF GE   
Sbjct: 275 -FDAVFLGIETPDEDSLKLTKKFQNTRDSLTDTIDIL--IRAGLRPMAGFIIGFDGEKTG 331

Query: 346 DFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
                +  V+      A          T   + LE+
Sbjct: 332 AASRIISFVENAAIPTAMFGMLQALPHTALWHRLEK 367


>gi|124485578|ref|YP_001030194.1| hypothetical protein Mlab_0756 [Methanocorpusculum labreanum Z]
 gi|124363119|gb|ABN06927.1| Radical SAM domain protein [Methanocorpusculum labreanum Z]
          Length = 551

 Score = 65.0 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 47/251 (18%), Positives = 89/251 (35%), Gaps = 32/251 (12%)

Query: 158 DKFERLSIVDGGYNRKRGVTAFLT----IQEGC----DKFCTFCVVPYTRGIEISRSLSQ 209
             ++R +++     R+      +       +GC       C+FC  P+  G+   RS+  
Sbjct: 156 PDYDRWAVLGAEIIRRHPFFPHVMCELETAKGCFRCISGGCSFCTEPF-YGMPRMRSIEG 214

Query: 210 VVDEARKLIDNGVCEITLLGQ-NVNAWRGKGLDGEKCTFSDLLYSLSEI----KGLVRLR 264
           +V E   L   G     L  Q ++ A+   G +  K     L    S I      L+ L 
Sbjct: 215 IVSEVSALSKAGARHFRLGRQPDLLAFGTSGSEYPKPEPDKLRALFSGIREASPDLLTLH 274

Query: 265 YTTSHP------RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
               +P       + S   + A  +           V+S    ++++ N + +  +  + 
Sbjct: 275 IDNVNPGTIARHEEASREALLAIVEGHTEGDIAAFGVESVDPAVIEANNLKGSPEQIFRA 334

Query: 319 IDRI-------RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA-----QAFSFK 366
           I+ +       R+  P++    +FI G  GET + F      +DKI  +     +    +
Sbjct: 335 IEIVNEVGAVRRNGIPELLPGLNFIGGLAGETVETFALNKAFLDKILASGLLVRRVNIRQ 394

Query: 367 YSPRLGTPGSN 377
             P  GT    
Sbjct: 395 LMPFEGTKAYE 405


>gi|303243019|ref|ZP_07329472.1| Radical SAM domain protein [Acetivibrio cellulolyticus CD2]
 gi|302589438|gb|EFL59233.1| Radical SAM domain protein [Acetivibrio cellulolyticus CD2]
          Length = 444

 Score = 65.0 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 54/379 (14%), Positives = 119/379 (31%), Gaps = 55/379 (14%)

Query: 42  LRMEDMFFSQGYE------RVNSMDDADLIVLNTCHIREK----AAEKVYSFLGRIRNLK 91
             +     ++G E       + ++   D I       REK    A     +    +    
Sbjct: 28  EYLYTELKNRGIESYIYDGLIENISVKDTI------FREKPDVVAVTGYITQQKLMIEYC 81

Query: 92  NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK---- 147
           +   +   +++ VV G   Q   E+       ++ ++  ++ +   ELL      K    
Sbjct: 82  SLAKEFNSNIITVVGGVHVQRNYEQFY--DDNIDYLLRSESVFDFGELLSGTELSKINGL 139

Query: 148 ------RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQE--------GCDKFCTFC 193
                 + V  +    D           +N+ +    +L +QE         C   C FC
Sbjct: 140 IYKKEGQYVKNELLPIDINSLPIPDRSFFNKHKSKYHYLHLQEVATIKTAFSCPYNCNFC 199

Query: 194 -VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLY 252
                  G   +R LS V++E + +    V  +                 +K    + + 
Sbjct: 200 YCTLLAGGKYRARDLSLVIEELKTIESENVQIV-----------DDDFLVDKSRLLEFVR 248

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL-MPYLHLPVQSGSDRILKSMNRRHT 311
            + E    ++  Y      D          +L  +   Y  + +++ S+  L +MN++ +
Sbjct: 249 LVKE--NNIKKTYICYARADFVANNEDIVKELCSIGFKYFLVGLEAISNEELLAMNKQVS 306

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
             E R+ I+ + +           ++       + F      V +          ++P  
Sbjct: 307 IDENRKCIEVLGNANAHCIA---LLIAPISADKEYFDKLYRFVKETKLLYVTVSIFTPIP 363

Query: 372 GTPGS-NMLEQVDENVKAE 389
           GTP      ++++     E
Sbjct: 364 GTPLYEEYKDKINSKDIEE 382


>gi|299140850|ref|ZP_07033988.1| oxygen-independent coproporphyrinogen III oxidase [Prevotella oris
           C735]
 gi|298577816|gb|EFI49684.1| oxygen-independent coproporphyrinogen III oxidase [Prevotella oris
           C735]
          Length = 384

 Score = 65.0 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 40/242 (16%), Positives = 85/242 (35%), Gaps = 31/242 (12%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEA--RKLIDNGVCEITLLGQ------NVNAWRG 237
           C   C +C          S +   +  +       +  + +  + G+       +     
Sbjct: 11  CASRCIYC-------GFYSTTQQSLHQQYVDMLCHEMDLRQTEITGEQADTENTITTIYL 63

Query: 238 KGLDGEKCTFSDLLYSLSEIKGLV------RLRYTTSHPRDMSDCLIKAHGDLDVLMPYL 291
            G      + + L   L  I  +       R      +P DM++        L+  +  +
Sbjct: 64  GGGTPSMLSGNQLEQILLYIYKVWGKHIDLRELTIECNPDDMTEAFAARLATLN--VNRV 121

Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV-RPDIAISSDFIVGFPGETDDDFRAT 350
            +  Q+ ++  L+ ++RRH   E  Q ++ +R V   +I+I  D + GFP ET ++++  
Sbjct: 122 SMGAQTFNNNRLRFLHRRHNREEIMQAVNYLRHVGIKNISI--DLMFGFPEETMEEWQTD 179

Query: 351 MDLVDKIGYAQAFSFKYSPRLGTPGSNML-----EQVDENVKAERLLCLQKKLREQQVSF 405
           +    K+      ++      GTP  +M      + +DE         L   L +     
Sbjct: 180 LQEAIKLNVEHISAYSLMYEEGTPLFHMKQEKKIKDIDEETSLAMYEMLINLLTKAGYEH 239

Query: 406 ND 407
            +
Sbjct: 240 YE 241


>gi|254179084|ref|ZP_04885737.1| radical SAM domain/B12 binding domain protein [Burkholderia mallei
           ATCC 10399]
 gi|160694602|gb|EDP84611.1| radical SAM domain/B12 binding domain protein [Burkholderia mallei
           ATCC 10399]
          Length = 647

 Score = 65.0 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 52/312 (16%), Positives = 100/312 (32%), Gaps = 54/312 (17%)

Query: 95  IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF--------- 145
            +   DL V++ G  A     +IL R P  +++V  +    LP +L+             
Sbjct: 98  KRREPDLPVLLGGPHATMLHRQILERFPQFDIIVRYEADEILPAVLDCLEQRTFDVIPGL 157

Query: 146 ----------------GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKF 189
                             +V + D      ++   + D G++  R     +    GC   
Sbjct: 158 SWRATGRGAPLRFTDGKPKVEELDRLPIASYDHYPVDDLGFSMLR-----IEAGRGCPFA 212

Query: 190 CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSD 249
           CTFC        + S  L        +L                +      D        
Sbjct: 213 CTFCSTAGFF--QRSFRLKSAERLVHELDILHRRYRV-------SDFKLDHDMFTVNRHK 263

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
           ++     + G       ++    + + L++   D       L+  V++GS+R+     +R
Sbjct: 264 VMAFCEAVAGRGYRWRASARIDCVDEALLRKMADAG--CVNLYFGVETGSERMQTICRKR 321

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSD--FIVGFPGETDDDFRATMDLVDKIG-----YAQA 362
                  ++++ I +      I +   FI G+P E+  D   T+D++ +         Q 
Sbjct: 322 ----LDLRLVEPILAAADSFGIETTASFITGYPQESGQDQDDTLDMIGRCARRPSCLTQL 377

Query: 363 FSFKYSPRLGTP 374
                 P  GTP
Sbjct: 378 HMLA--PEPGTP 387


>gi|119510883|ref|ZP_01630007.1| Radical SAM [Nodularia spumigena CCY9414]
 gi|119464492|gb|EAW45405.1| Radical SAM [Nodularia spumigena CCY9414]
          Length = 490

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 40/302 (13%), Positives = 98/302 (32%), Gaps = 30/302 (9%)

Query: 79  KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVV---------- 128
           +++   G ++       K   D   ++ G       E++ +  P   ++           
Sbjct: 85  ELWRNQGLVKRGLRRAQKYHADARAILGGGAVSVFYEQLGKSLPQGTIISVGEGETLLEK 144

Query: 129 ---GPQTYYRLPELLERARFGKRVVDTDYSVEDK-------FERLSIVDGGYNRKRGVTA 178
              G +       ++   +  +R++    +  +K        E +      Y +++    
Sbjct: 145 LLSGREIQDERCYVVGETQPRQRMIHEQPTPLEKTACNYNYIESIWPEFNFYLQEQDFYI 204

Query: 179 FLTIQEGCDKFCTFCVVPYTRGIEISR-SLSQVVDEARKLIDNGVCEITLL-GQNVNAWR 236
            +  + GC   C +CV     G ++      +VV E R+L D G+        Q + A +
Sbjct: 205 GVQTKRGCPHNCCYCVYTVVEGKQVRINPADEVVAEMRQLYDRGIRNFWFTDAQFIPARK 264

Query: 237 GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQ 296
                       +LL  + +               +++  L          M Y  + + 
Sbjct: 265 FID------DAVELLQKIVDSGMTDINWAAYIRADNLTPQLCDLMAKTG--MNYFEIGIT 316

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
           SGS  +++ M   +      Q    +++   +  +S ++      E  +  R T+    +
Sbjct: 317 SGSQELVRKMRMGYNLRTVLQNCRDLKAAGFNDMVSVNYSFNVIDERPETIRQTIAYHRE 376

Query: 357 IG 358
           + 
Sbjct: 377 LE 378


>gi|319641997|ref|ZP_07996664.1| Fe-S oxidoreductase [Bacteroides sp. 3_1_40A]
 gi|317386422|gb|EFV67334.1| Fe-S oxidoreductase [Bacteroides sp. 3_1_40A]
          Length = 629

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 51/327 (15%), Positives = 105/327 (32%), Gaps = 66/327 (20%)

Query: 111 QAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGY 170
           +A  ++  +++     +      Y    +L+       VV+  Y    + E     D  Y
Sbjct: 246 EACLKDKKKQAENFRFIEEESNKYEASRILQDTGNETVVVNPPYPPMSQGELDHSFDLPY 305

Query: 171 NR-------KRGVTAFLTI------QEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEAR- 215
            R        + + AF  I        GC   C FC +   +G   +SRS   ++ E R 
Sbjct: 306 TRMPHPKYKGKRIPAFDMIKFSVNLHRGCFGGCAFCTISAHQGKFIVSRSKESILREVRA 365

Query: 216 --KLIDNGVCEITLLGQNVNAWRGKGLDGEKCT----------------------FSDLL 251
             ++ D       L G + N +  +G D + C                         D+ 
Sbjct: 366 ITEMPDFKGYLSDLGGPSANMYAMRGKDEKICRRCKRPSCIHPKVCPNLNTDHRPLLDIY 425

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL----------------HLPV 295
           +S+  + G+ +          +   L++       +                     +  
Sbjct: 426 HSVDALPGIKKSFIG----SGVRYDLLQYQSKDPAVNRSTAEYTRELIAHHVSGRLKVAP 481

Query: 296 QSGSDRILKSMNRR-----HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
           +  SD++L+ M +      +   +    I++  ++R  I     FI   PG T++D    
Sbjct: 482 EHTSDQVLQIMRKPSFSQFYDFKKTFDKINKELNMRQQIIPY--FISSHPGCTEEDMAEL 539

Query: 351 MDLVDKIGYAQAFSFKYSPRLGTPGSN 377
             +  K+ +       ++P   T  + 
Sbjct: 540 AVITKKLDFHLEQVQDFTPTPMTVATE 566


>gi|325294833|ref|YP_004281347.1| Radical SAM domain protein [Desulfurobacterium thermolithotrophum
           DSM 11699]
 gi|325065281|gb|ADY73288.1| Radical SAM domain protein [Desulfurobacterium thermolithotrophum
           DSM 11699]
          Length = 562

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 55/311 (17%), Positives = 103/311 (33%), Gaps = 63/311 (20%)

Query: 184 EGCD--KFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQ-NVNAWR---- 236
            GC+    C++C      G    R   ++++E + L   GV    +  Q N+  ++    
Sbjct: 193 RGCERKHHCSYC-TEAFYGHPDEREPEKIIEEIKALYSTGVKYFRIGRQPNILGYKAIST 251

Query: 237 -GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP------RDMSDCLIKAHGDLDVLMP 289
            G+          +L  S+  I  +  L     +        + S   +    + D    
Sbjct: 252 FGEFSIPNVEVICNLFRSIRNIGDIKTLHIDNVNAGTIDAYPEESKRALYCIANHDTEGD 311

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIID------RIRSVRPDIA---ISSDFIVGFP 340
                +++  + ++K    +      ++ I         +  +  +       +F+VG P
Sbjct: 312 VAPFGLETADEEVIKKNYLKVNPEGIKKAIRIVNEVGAFKERKDGLYKLLPGINFLVGLP 371

Query: 341 GETDDDFRATMDLVDKI-----GYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER----- 390
           GET   F    D +  I        +    +     GT       Q+ E VK  R     
Sbjct: 372 GETKKTFEKNKDFLKSILDEGLLLRRINIRQVMIFEGT-------QISEMVKKARTKYRK 424

Query: 391 -LLCLQKKLREQQVSFNDAC---VGQII-EVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445
                ++ +RE+           VG +I EVL+E +  + G  +GR              
Sbjct: 425 EFEKFKQFVREEIDFPMMKKVFPVGTVIKEVLLEAY--DGGHTLGR-------------- 468

Query: 446 NIGDI-IKVRI 455
            IG   + VRI
Sbjct: 469 QIGSYPVLVRI 479


>gi|90578995|ref|ZP_01234805.1| hypothetical protein VAS14_04798 [Vibrio angustum S14]
 gi|90439828|gb|EAS65009.1| hypothetical protein VAS14_04798 [Vibrio angustum S14]
          Length = 788

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 54/318 (16%), Positives = 104/318 (32%), Gaps = 38/318 (11%)

Query: 131 QTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGY---NRKRGVTAFLTIQEGCD 187
           Q +      + RA       + D+     F R+     G         +   + I  GC 
Sbjct: 320 QKHADRELWVNRAPIPLSTEEMDFVFGLPFARVPHPSYGKAKIPAYDMIKTSVNIMRGCF 379

Query: 188 KFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDN--GVCEIT--LLGQNVNAWR------ 236
             C+FC +    G  I +RS   +++E + + +   G       L G   N +R      
Sbjct: 380 GGCSFCSITEHEGRIIQNRSKESILNEIKDIQEKVPGFTGTISDLGGPTANMYRLGCSDE 439

Query: 237 ----------------GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKA 280
                            + L+ +     DL      +KG+ ++   +    D++    + 
Sbjct: 440 RAEANCRRPSCIFPKICEKLNTDHKHTIDLYREARNLKGIKKIMIASGVRYDLAVESPEY 499

Query: 281 HGDL--DVLMPYLHLPVQSGSDRILKSMNRRH--TAYEYRQIIDRI-RSVRPDIAISSDF 335
             +L    +  YL +  +      L  M +    T   ++++ ++  +       +   F
Sbjct: 500 VRELVTHHVGGYLKIAPEHTEKGTLDLMMKPGMGTFDRFKEMFEQYSQEAGKKQYLIPYF 559

Query: 336 IVGFPGETDDDFRATMDLVDKIGY--AQAFSFKYSPRLGTPGSNMLEQVD-ENVKAERLL 392
           I   PG TD+D       + +  Y   Q  +F  SP          E    + VK +   
Sbjct: 560 ISAHPGSTDEDMLNLALWLKQNDYQCDQVQNFYPSPMCNATAMYHSETNPLKKVKYKGRE 619

Query: 393 CLQKKLREQQVSFNDACV 410
            L     E+Q   + A +
Sbjct: 620 DLSVAKGERQRRLHKALL 637


>gi|53714413|ref|YP_100405.1| hypothetical protein BF3126 [Bacteroides fragilis YCH46]
 gi|60682432|ref|YP_212576.1| hypothetical protein BF2962 [Bacteroides fragilis NCTC 9343]
 gi|253564910|ref|ZP_04842366.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|265766135|ref|ZP_06094176.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|52217278|dbj|BAD49871.1| putative Fe-S oxidoreductase [Bacteroides fragilis YCH46]
 gi|60493866|emb|CAH08657.1| conserved hypothetical protein [Bacteroides fragilis NCTC 9343]
 gi|251946375|gb|EES86752.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|263253803|gb|EEZ25268.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
          Length = 618

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 52/324 (16%), Positives = 110/324 (33%), Gaps = 59/324 (18%)

Query: 108 CVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVD 167
           C+A  + +    R      +      Y    +++       VV+  Y    + E     D
Sbjct: 238 CLADKKKQATNFRH-----IEEESNKYAAARIVQAVDGKTVVVNPPYPPMTEKELDRSFD 292

Query: 168 GGYNR-------KRGVTAF------LTIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDE 213
             Y R        + + A+      + I  GC   C FC +   +G   +SRS   ++ E
Sbjct: 293 LPYTRLPHPKYKGKRIPAYDMIKFSVNIHRGCFGGCAFCTISAHQGKFIVSRSKESILKE 352

Query: 214 ARKLI---DNGVCEITLLGQNVNAWRGKGLD----------------------GEKCTFS 248
            ++++   D       L G + N ++  G D                       +     
Sbjct: 353 VKEVVQLPDFKGNLSDLGGPSANMYKMGGKDLSLCKRCKRPSCIHPKVCPNLNTDHRPLL 412

Query: 249 DLLYSLSEIKGLVRLRYTT--------SHPRDMSDCLIKAHGDLDVLMPYLH----LPVQ 296
           D+ Y++  +  + R    +           +D +   I A    +++  ++     +  +
Sbjct: 413 DIYYAVDSLPEIKRSFIGSGVRYDLLLHQSKDATVNKITAEYTRELIARHVSGRLKVAPE 472

Query: 297 SGSDRILKSMNRRHTAYE--YRQIIDRI-RSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
             SDR+L  M +   +    +++I DRI R +     +   FI   PG  ++D      +
Sbjct: 473 HTSDRVLSIMRKPAFSQFGEFKKIFDRINRELGLRQQLIPYFISSHPGCKEEDMAELAVI 532

Query: 354 VDKIGYAQAFSFKYSPRLGTPGSN 377
             ++ +       ++P   T  + 
Sbjct: 533 TKQLDFHLEQVQDFTPTPMTVATE 556


>gi|89072968|ref|ZP_01159515.1| putative Fe-S oxidoreductase family 2 [Photobacterium sp. SKA34]
 gi|89051186|gb|EAR56642.1| putative Fe-S oxidoreductase family 2 [Photobacterium sp. SKA34]
          Length = 788

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 54/318 (16%), Positives = 104/318 (32%), Gaps = 38/318 (11%)

Query: 131 QTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGY---NRKRGVTAFLTIQEGCD 187
           Q +      + RA       + D+     F R+     G         +   + I  GC 
Sbjct: 320 QKHADRELWVNRAPIPLSTEEMDFVFGLPFARVPHPSYGKAKIPAYDMIKTSVNIMRGCF 379

Query: 188 KFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDN--GVCEIT--LLGQNVNAWR------ 236
             C+FC +    G  I +RS   +++E + + +   G       L G   N +R      
Sbjct: 380 GGCSFCSITEHEGRIIQNRSKESILNEIKDIQEKVPGFTGTISDLGGPTANMYRLGCSDE 439

Query: 237 ----------------GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKA 280
                            + L+ +     DL      +KG+ ++   +    D++    + 
Sbjct: 440 RAEANCRRPSCIFPKICEKLNTDHKHTIDLYREARNLKGIKKIMIASGVRYDLAVESPEY 499

Query: 281 HGDL--DVLMPYLHLPVQSGSDRILKSMNRRH--TAYEYRQIIDRI-RSVRPDIAISSDF 335
             +L    +  YL +  +      L  M +    T   ++++ ++  +       +   F
Sbjct: 500 VRELVTHHVGGYLKIAPEHTEKGTLDLMMKPGMGTFDRFKEMFEQYSQEAGKKQYLIPYF 559

Query: 336 IVGFPGETDDDFRATMDLVDKIGY--AQAFSFKYSPRLGTPGSNMLEQVD-ENVKAERLL 392
           I   PG TD+D       + +  Y   Q  +F  SP          E    + VK +   
Sbjct: 560 ISAHPGSTDEDMLNLALWLKQNDYQCDQVQNFYPSPMCNATAMYHSETNPLKKVKYKGRE 619

Query: 393 CLQKKLREQQVSFNDACV 410
            L     E+Q   + A +
Sbjct: 620 DLSVAKGERQRRLHKALL 637


>gi|197117048|ref|YP_002137475.1| radical SAM domain iron-sulfur cluster-binding oxidoreductase
           [Geobacter bemidjiensis Bem]
 gi|197086408|gb|ACH37679.1| radical SAM domain iron-sulfur cluster-binding oxidoreductase,
           TIGR01212 family [Geobacter bemidjiensis Bem]
          Length = 318

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 41/203 (20%), Positives = 64/203 (31%), Gaps = 12/203 (5%)

Query: 183 QEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG 242
             G    C +C        E   +++ +  E +           L  +    +  K  + 
Sbjct: 44  SRG-TGGCIYCDNSSFSPKE---TVAVIPIEEQMAAGMAYHRTRLASEKFIVYFQKFTNT 99

Query: 243 EKC--TFSDLLYSLSEIKGLVRLRYTT-SHPRDMSDC-LIKAHGDLDVLMPYLHLPVQSG 298
                  SDL         +V +   T     D     L+        +   + L +QS 
Sbjct: 100 YAPVEKLSDLYRRALSHPDVVGISVGTRPDSIDDDAVALLTELARDRYVC--VELGLQSI 157

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
            D IL  +NR HT  EY   +DR+      I I +  I GFPGE    F     L+  + 
Sbjct: 158 DDAILTGINRGHTFAEYLSTVDRLAGR--GIDICTHLIYGFPGEKRSGFVKGARLISSLP 215

Query: 359 YAQAFSFKYSPRLGTPGSNMLEQ 381
                  +     GT  + M   
Sbjct: 216 VTAVKLHQLHAVEGTKLARMYRD 238


>gi|301163895|emb|CBW23450.1| conserved hypothetical protein [Bacteroides fragilis 638R]
          Length = 618

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 52/324 (16%), Positives = 110/324 (33%), Gaps = 59/324 (18%)

Query: 108 CVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVD 167
           C+A  + +    R      +      Y    +++       VV+  Y    + E     D
Sbjct: 238 CLADKKKQATNFRH-----IEEESNKYAAARIVQAVDGKTVVVNPPYPPMTEKELDRSFD 292

Query: 168 GGYNR-------KRGVTAF------LTIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDE 213
             Y R        + + A+      + I  GC   C FC +   +G   +SRS   ++ E
Sbjct: 293 LPYTRLPHPKYKGKRIPAYDMIKFSVNIHRGCFGGCAFCTISAHQGKFIVSRSKESILKE 352

Query: 214 ARKLI---DNGVCEITLLGQNVNAWRGKGLD----------------------GEKCTFS 248
            ++++   D       L G + N ++  G D                       +     
Sbjct: 353 VKEVVQLPDFKGNLSDLGGPSANMYKMGGKDLSLCKRCKRPSCIHPKVCPNLNTDHRPLL 412

Query: 249 DLLYSLSEIKGLVRLRYTT--------SHPRDMSDCLIKAHGDLDVLMPYLH----LPVQ 296
           D+ Y++  +  + R    +           +D +   I A    +++  ++     +  +
Sbjct: 413 DIYYAVDSLPEIKRSFIGSGVRYDLLLHQSKDATVNKITAEYTRELIARHVSGRLKVAPE 472

Query: 297 SGSDRILKSMNRRHTAYE--YRQIIDRI-RSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
             SDR+L  M +   +    +++I DRI R +     +   FI   PG  ++D      +
Sbjct: 473 HTSDRVLSIMRKPAFSQFGEFKKIFDRINRELGLRQQLIPYFISSHPGCKEEDMAELAVI 532

Query: 354 VDKIGYAQAFSFKYSPRLGTPGSN 377
             ++ +       ++P   T  + 
Sbjct: 533 TKQLDFHLEQVQDFTPTPMTVATE 556


>gi|295695076|ref|YP_003588314.1| Radical SAM domain protein [Bacillus tusciae DSM 2912]
 gi|295410678|gb|ADG05170.1| Radical SAM domain protein [Bacillus tusciae DSM 2912]
          Length = 602

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 56/341 (16%), Positives = 101/341 (29%), Gaps = 47/341 (13%)

Query: 95  IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK------- 147
            K      VV+ G     +  E + + P V+ +V  +      ELL   R G        
Sbjct: 78  KKVSPATRVVLGGPEVSYDTWEWMGKWPEVDAIVIGEGEATFLELLRAWRDGGDLGEIAG 137

Query: 148 ---------RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
                    ++      +E      S   G          +     GC   C FC+    
Sbjct: 138 LAFREGDRVKIAPRRGWIEPLDAIPSPYRGHLEELDNRIVYFEASRGCPFHCQFCL-SSI 196

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258
                  SL +V ++  +LID GV +I  + +  N  +   L        +L   L+   
Sbjct: 197 DDAVRYFSLQRVKEDLARLIDYGVSQIKFVDRTFNLKKDYAL--------ELFQFLARYP 248

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           G    ++  +      + +     +         + VQS ++   + + R          
Sbjct: 249 GRTVFQFEITADILRLEIVEFLAAEAPPGRFRFEIGVQSTNEETNRLIRRIQRFDRLAGT 308

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA---------------- 362
           + R+R     +    D I G P E    FR T D V  +   +                 
Sbjct: 309 VRRLRES-GRVVQHLDLIAGLPREDYRSFRKTFDDVYALEPDELQLGFLKLLRGTGLRAR 367

Query: 363 ---FSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLRE 400
              F + Y      P   +   V       R+  ++  + +
Sbjct: 368 AAEFGYVYMDEP--PYEVLANDVLPYEDVRRIKRVEDMVDK 406


>gi|110834825|ref|YP_693684.1| lipoyl synthase [Alcanivorax borkumensis SK2]
 gi|122959368|sp|Q0VN36|LIPA_ALCBS RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|110647936|emb|CAL17412.1| lipoic acid synthetase [Alcanivorax borkumensis SK2]
          Length = 325

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 34/209 (16%), Positives = 75/209 (35%), Gaps = 14/209 (6%)

Query: 161 ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN 220
           E  +  +       G   F+ + + C + C FC V + R   +     + +  A  + + 
Sbjct: 69  EEAACPNLPECFGGGTATFMIMGDICTRRCAFCDVGFGRPNAL--DAQEPLHLAESVENL 126

Query: 221 GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKA 280
           G+  + +   +    R    DG    F++ +  +  +    R+   T   R   D  ++ 
Sbjct: 127 GLNYVVITSVD----RDDLADGGAEHFAECIRQVRALTPETRIEILTPDFRPCLDTAVEI 182

Query: 281 HGDL--DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVG 338
             +   DV    +    +     + K +           ++ R +++RPD++  S  +VG
Sbjct: 183 LAETAPDVFNHNIETVPE-----LYKHIRPGARYQHSLDLLKRYKALRPDVSTKSGIMVG 237

Query: 339 FPGETDDDFRATMDLVDKIGYAQAFSFKY 367
             GET +    T+  +           +Y
Sbjct: 238 L-GETFEQVINTIKDLRTHDVDMITIGQY 265


>gi|307128784|ref|YP_003880800.1| coproporphyrinogen III oxidase, SAM and NAD(P)H dependent,
           oxygen-independent [Dickeya dadantii 3937]
 gi|306526313|gb|ADM96243.1| coproporphyrinogen III oxidase, SAM and NAD(P)H dependent,
           oxygen-independent [Dickeya dadantii 3937]
          Length = 457

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 46/234 (19%), Positives = 88/234 (37%), Gaps = 17/234 (7%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC         ++R L +  +   +L         L    V      G  G   
Sbjct: 62  CHRLCYFC----GCNKLVTRQLHKADEYLDRLALEIRQRAPLFAGRVVTQMHWG--GGTP 115

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL-------MPYLHLPVQSG 298
           TF      +S + GL+R  +  +   +MS  +     +LDVL          L + VQ  
Sbjct: 116 TF-LNKTQISRLMGLLRQYFHFAEQAEMSLEVDPREIELDVLDHLRAEGFNRLSMGVQDF 174

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           +  + + +NR         +I+R +++    + + D I G P +T D F  T+  V  + 
Sbjct: 175 NKEVQRLVNREQDEAFIFALIERAKAL-GFASTNIDLIYGLPKQTPDSFAFTLQRVAALR 233

Query: 359 YAQAFSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVG 411
             +   F Y+       +   +++ D     ++L  LQ+ ++    +     +G
Sbjct: 234 PDRLSVFNYAHLPSLFAAQRKIKEADLPDAEQKLAILQQTIQSLTAAGYQ-FIG 286


>gi|121597537|ref|YP_990779.1| radical SAM domain/B12 binding domain-containing protein
           [Burkholderia mallei SAVP1]
 gi|126446727|ref|YP_001077240.1| radical SAM domain/B12 binding domain-containing protein
           [Burkholderia mallei NCTC 10247]
 gi|238562155|ref|ZP_00440834.2| B12-binding/radical SAM domain protein [Burkholderia mallei GB8
           horse 4]
 gi|251766747|ref|ZP_02264869.2| radical SAM domain/B12 binding domain protein [Burkholderia mallei
           PRL-20]
 gi|254204308|ref|ZP_04910666.1| radical SAM domain/B12 binding domain protein [Burkholderia mallei
           FMH]
 gi|254209475|ref|ZP_04915820.1| radical SAM domain/B12 binding domain protein [Burkholderia mallei
           JHU]
 gi|121225335|gb|ABM48866.1| radical SAM domain/B12 binding domain protein [Burkholderia mallei
           SAVP1]
 gi|126239581|gb|ABO02693.1| radical SAM domain/B12 binding domain protein [Burkholderia mallei
           NCTC 10247]
 gi|147744845|gb|EDK51927.1| radical SAM domain/B12 binding domain protein [Burkholderia mallei
           FMH]
 gi|147749995|gb|EDK57067.1| radical SAM domain/B12 binding domain protein [Burkholderia mallei
           JHU]
 gi|238523140|gb|EEP86580.1| B12-binding/radical SAM domain protein [Burkholderia mallei GB8
           horse 4]
 gi|243064837|gb|EES47023.1| radical SAM domain/B12 binding domain protein [Burkholderia mallei
           PRL-20]
          Length = 647

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 52/312 (16%), Positives = 100/312 (32%), Gaps = 54/312 (17%)

Query: 95  IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF--------- 145
            +   DL V++ G  A     +IL R P  +++V  +    LP +L+             
Sbjct: 98  KRREPDLPVLLGGPHATMLHRQILERFPQFDIIVRYEADEILPAVLDCLEQRTFDVIPGL 157

Query: 146 ----------------GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKF 189
                             +V + D      ++   + D G++  R     +    GC   
Sbjct: 158 SWRATGRGAPLRFTDGKPKVEELDRLPIASYDHYPVDDLGFSMLR-----IEAGRGCPFA 212

Query: 190 CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSD 249
           CTFC        + S  L        +L                +      D        
Sbjct: 213 CTFCSTAGFF--QRSFRLKSAERLVHELDILHRRYRV-------SDFKLDHDMFTVNRHK 263

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
           ++     + G       ++    + + L++   D       L+  V++GS+R+     +R
Sbjct: 264 VMAFCEAVAGRGYRWRASARIDCVDEALLRKMADAG--CVNLYFGVETGSERMQTICRKR 321

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSD--FIVGFPGETDDDFRATMDLVDKIG-----YAQA 362
                  ++++ I +      I +   FI G+P E+  D   T+D++ +         Q 
Sbjct: 322 ----LDLRLVEPILAAADSFGIETTASFITGYPQESGQDQDDTLDMIGRCARRPSCLTQL 377

Query: 363 FSFKYSPRLGTP 374
                 P  GTP
Sbjct: 378 HMLA--PEPGTP 387


>gi|95929526|ref|ZP_01312268.1| Radical SAM [Desulfuromonas acetoxidans DSM 684]
 gi|95134223|gb|EAT15880.1| Radical SAM [Desulfuromonas acetoxidans DSM 684]
          Length = 457

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 60/333 (18%), Positives = 120/333 (36%), Gaps = 31/333 (9%)

Query: 61  DADLIVL---NTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEI 117
           +AD++ L   N  ++   +++K + +L   + L    I+      VVV G       EEI
Sbjct: 60  NADVVCLSLRNIDNVDSFSSDKNW-YLTDAKRLIE-TIRTISSAPVVVGGPAFSILPEEI 117

Query: 118 LRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTD------YSVEDKFERLSIVDGGYN 171
           L        VVG      +P L++R   G++V             E     L      Y 
Sbjct: 118 LSYLGADYGVVGEGEQ-AVPTLIDRISRGEKVEAITCGSQPLQGHEMGQPLLVPEFVDYY 176

Query: 172 RKRGVTAFLTIQEGCDKFCTFCVVPYTRG-IEISRSLSQVVDE-ARKLIDNGVCEITLLG 229
           ++      L  + GC   C +C  P   G     R +  VV++ AR   D+    +    
Sbjct: 177 QQHSGLINLQTKRGCPFKCVYCTYPGLEGHRFRPRPVDAVVEDLARLKRDHATSTVFFTD 236

Query: 230 QNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMP 289
              N  +G         + +L   +   +  +R       P+ ++  +++      +   
Sbjct: 237 SIFNDPQG--------LYLELAEEMVRRELDIR-WCAFFRPQGLNREVLQLLKRAGLYA- 286

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFI-VGFPGETDDDFR 348
            + +   + SD  L  +++    + + +++   ++   +    + FI  G P ET +   
Sbjct: 287 -MEMGTDAASDTTLAGLDKG---FGFDEVLACQQAAIAEQVPCAHFIMFGGPNETPETVA 342

Query: 349 ATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
             +  +          F +S     P S +LE+
Sbjct: 343 EGLSNI--AKLEHCVVFAFSGIRILPKSRLLER 373


>gi|307133574|dbj|BAJ19064.1| putative C-methyltransferase [Streptomyces sp. SANK 62799]
          Length = 629

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 61/368 (16%), Positives = 111/368 (30%), Gaps = 54/368 (14%)

Query: 90  LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149
           L     +   D   V  G     + +++ R  P V++VV  +      EL+      +R 
Sbjct: 66  LAEVHKQLKPDGFTVFGGNHVSHQAQKVFRECPDVDIVVNGEGELTFRELVAAILADRRT 125

Query: 150 VDTDY----------------SVEDKFERLSIVDGGYNRKRGVT-----------AFLTI 182
                                S   + + L I+   +                  A +  
Sbjct: 126 PALAAVSGLSYRTSGQDFSTTSDRPRIDDLDIIPSPFLSGAIPLLDQKGNFPYEFALMET 185

Query: 183 QEGCDKFCTFCVVPYTRG-IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD 241
             GC   C+FC      G    S S  ++  E      + V  + L   N        L+
Sbjct: 186 NRGCPYRCSFCYWGGATGQRVRSFSRDRLAAELDLFGYHQVPTVFLCDANFG-----MLE 240

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
            ++    DLL    +      L    +  +      I      +       L +Q+ SD 
Sbjct: 241 ADEEFTDDLLKIHEKYGFPTSLEANWAKNKSQRFHRIVRTLKQNGFKSSFTLALQTLSDE 300

Query: 302 ILKSMNRRHTA-YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
            L  M RR+    +++ + + + +    +    + I G PGET + F    D + +    
Sbjct: 301 ALTDMRRRNMKLNQWQDLAEWLAA--EGMESFVELIWGAPGETVESFLDGYDRIAE-KVP 357

Query: 361 QAFSFKYSPRLGTPGSNMLEQVD--------------ENVKAERLLCLQKKLREQQVSFN 406
           +   +       T   +  EQ +              E V A R   L +    Q+  F 
Sbjct: 358 RIAVYPLLLLPNT---DYSEQRELHGFVTVRGESDDFEYVLASRSASLAENFAMQRFMFL 414

Query: 407 DACVGQII 414
              +G+  
Sbjct: 415 ARILGENQ 422


>gi|297569099|ref|YP_003690443.1| Radical SAM domain protein [Desulfurivibrio alkaliphilus AHT2]
 gi|296925014|gb|ADH85824.1| Radical SAM domain protein [Desulfurivibrio alkaliphilus AHT2]
          Length = 448

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 47/293 (16%), Positives = 80/293 (27%), Gaps = 26/293 (8%)

Query: 95  IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDY 154
           I+E     VV+ G        ++L        VVG      LP L +    G+       
Sbjct: 91  IRENSAAPVVLGGPAFSLMPRQLLEFLQADYGVVGEGEVL-LPWLADELTAGRPPQAKLL 149

Query: 155 SVEDKFERLSIVDGGYNRKRGVTAF-----LTIQEGCDKFCTFCVVPYTRGI-EISRSLS 208
             E   E  +    G    +   A      +  + GC   C +C  P   G     R   
Sbjct: 150 RNEQPLEFWTRPSFGAGPLKYYLAHGGMMGVQTKRGCPYRCAYCSYPNIEGRSLRYRDPE 209

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
           +   E   L             +V        DG    F  L  +L +  G         
Sbjct: 210 ETAAEVAWLAAEHRVRYIFFTDSV------FNDGAG-HFRLLAEALIK-NGNQTPWCAFF 261

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID-RIRSVRP 327
            P+++    ++        +  + +   +  DR L  + +     +             P
Sbjct: 262 RPQNLEREDLRLLKRAG--LSAMEIGTDAACDRTLAGLEKGFDFTQVLHANRLAAEEKIP 319

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS---PRLGTPGSN 377
                   + G P E        +D +  +   Q   F +S      GT  + 
Sbjct: 320 CAHF---VMFGGPDEDRKTLAEGLDNL--LRLEQCIVFAFSGIRILPGTALAA 367


>gi|22299010|ref|NP_682257.1| hypothetical protein tll1467 [Thermosynechococcus elongatus BP-1]
 gi|22295192|dbj|BAC09019.1| tll1467 [Thermosynechococcus elongatus BP-1]
          Length = 520

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 46/302 (15%), Positives = 96/302 (31%), Gaps = 30/302 (9%)

Query: 79  KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVV-VGPQTYYRLP 137
           +++  L  IR   +   +   ++  +V G       E++  + P   +V VG        
Sbjct: 118 ELWRNLNLIRLGLHHAKRHHPEVTTIVGGGAVSVFYEQLGSQLPKGTIVSVGEGETLLHK 177

Query: 138 ELLERARFGKR-------------------VVDTDYSVEDKFERLSIVDGGYNRKRGVTA 178
            L  +   G+R                    ++      D  E +      Y +      
Sbjct: 178 VLTNQPISGERCYVAGVEKPRDRLIHEWPTPIEKTACNYDYIESIWPEFEYYLQGGDFYI 237

Query: 179 FLTIQEGCDKFCTFCVVPYTRGI-EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG 237
            +  + GC   C +CV     G         +VV E R+L D GV             R 
Sbjct: 238 GVQTKRGCPHNCCYCVYTVVEGKQVRIHPAQEVVAEMRQLYDRGVRNFWFTDAQFIPAR- 296

Query: 238 KGLDGEKCTFSDLLYSLSEIKGLVRLRY-TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQ 296
           K +        ++L +     G+  + +       +++  L +        M Y  + + 
Sbjct: 297 KFIPDAIALLREILKA-----GMNDIHWAAYIRADNLTPELCELMVQTG--MNYFEIGIT 349

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
           SGS  +++ M   +      Q    +++   +  +S ++      E  D    T+    +
Sbjct: 350 SGSQELVRKMRMGYNLRTVLQNCRDLKAAGFNALVSVNYSFNVIDERTDTIAQTIAYHRE 409

Query: 357 IG 358
           + 
Sbjct: 410 LE 411


>gi|210616268|ref|ZP_03291018.1| hypothetical protein CLONEX_03239 [Clostridium nexile DSM 1787]
 gi|210149866|gb|EEA80875.1| hypothetical protein CLONEX_03239 [Clostridium nexile DSM 1787]
          Length = 488

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 55/304 (18%), Positives = 104/304 (34%), Gaps = 50/304 (16%)

Query: 126 VVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLS-IVDGGYNRKRGVTAFLTIQE 184
           V+ G +    +  LLE  +  + V+D         ++ + +      R++ + A L  ++
Sbjct: 92  VLTGIRPTKIMMNLLEEGKSEQDVIDYMKENYRTTDKKANLGMEIAKREKALLAQLDYKD 151

Query: 185 G---------CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQ----- 230
           G         C   C++C          S+ + +  D   + +D    EIT +G+     
Sbjct: 152 GYSLYVGIPFCPTTCSYCSFT-------SQPIHKWKDRVDEYLDALCKEITFVGEVSKEK 204

Query: 231 NVNAWRGKGLDGEKCTFSDLLYSLSEIKG------LVRLRYTTSHPRDMSDCLIKAHGDL 284
            +N     G          L   LS I+       L         P  ++   ++     
Sbjct: 205 KLNTVYIGGGTPTTLEPEQLERLLSHIEKTFSFEDLKEFTVEAGRPDSITKEKLEVLRRH 264

Query: 285 DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETD 344
            +    + +  Q+   + L  + R+HT  + RQ+    R +  +  I+ D I G PGET 
Sbjct: 265 QI--SRISINPQTMQQKTLDCIGRKHTVEDIRQVYAMARELGFE-NINMDLIAGLPGETL 321

Query: 345 DDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVS 404
           DD + T+  ++                      M          +R   L ++ RE    
Sbjct: 322 DDMKDTLRQIEMFAPDSLTVH---------ALAM----------KRASRLTQEKREGSYR 362

Query: 405 FNDA 408
            ND 
Sbjct: 363 GNDQ 366


>gi|150004817|ref|YP_001299561.1| hypothetical protein BVU_2280 [Bacteroides vulgatus ATCC 8482]
 gi|149933241|gb|ABR39939.1| putative Fe-S oxidoreductase [Bacteroides vulgatus ATCC 8482]
          Length = 629

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 51/327 (15%), Positives = 105/327 (32%), Gaps = 66/327 (20%)

Query: 111 QAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGY 170
           +A  ++  +++     +      Y    +L+       VV+  Y    + E     D  Y
Sbjct: 246 EACLKDKKKQAENFRFIEEESNKYEASRILQDTGNETVVVNPPYPPMSQGELDHSFDLPY 305

Query: 171 NR-------KRGVTAFLTI------QEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEAR- 215
            R        + + AF  I        GC   C FC +   +G   +SRS   ++ E R 
Sbjct: 306 TRMPHPKYKGKRIPAFDMIKFSVNLHRGCFGGCAFCTISAHQGKFIVSRSKESILREVRA 365

Query: 216 --KLIDNGVCEITLLGQNVNAWRGKGLDGEKCT----------------------FSDLL 251
             ++ D       L G + N +  +G D + C                         D+ 
Sbjct: 366 ITEMPDFKGYLSDLGGPSANMYAMRGKDEKICRRCKRPSCIHPKVCPNLNTDHRPLLDIY 425

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL----------------HLPV 295
           +S+  + G+ +          +   L++       +                     +  
Sbjct: 426 HSVDALPGIKKSFIG----SGVRYDLLQYQSKDPAVNRSTAEYTRELIAHHVSGRLKVAP 481

Query: 296 QSGSDRILKSMNRR-----HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
           +  SD++L+ M +      +   +    I++  ++R  I     FI   PG T++D    
Sbjct: 482 EHTSDQVLQIMRKPSFSQFYDFKKTFDKINKELNMRQQIIPY--FISSHPGCTEEDMAEL 539

Query: 351 MDLVDKIGYAQAFSFKYSPRLGTPGSN 377
             +  K+ +       ++P   T  + 
Sbjct: 540 AVITKKLDFHLEQVQDFTPTPMTVATE 566


>gi|83589066|ref|YP_429075.1| radical SAM family protein [Moorella thermoacetica ATCC 39073]
 gi|83571980|gb|ABC18532.1| Radical SAM [Moorella thermoacetica ATCC 39073]
          Length = 656

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 45/215 (20%), Positives = 74/215 (34%), Gaps = 11/215 (5%)

Query: 159 KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLI 218
            F     +D   N     T +     GC   C FC+   T G     SL +V D+  +L+
Sbjct: 192 PFPYQEDLDAAGNELSQRTVYYETSRGCPFACGFCLSSTTEG-LRYFSLERVRDDLERLL 250

Query: 219 DNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLI 278
             GV EI  + +  NA + + L   +   S    +        R  +  +  R + + ++
Sbjct: 251 KAGVREIKFVDRTFNAHKKRALAIWEFLLSRRPRA--------RCYFEIAGDR-LDEEML 301

Query: 279 KAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVG 338
                +   +    + VQ+    +    NRR           R+R     I +  D I G
Sbjct: 302 AHLNRVPPDLFQFEIGVQTIDAGVNARCNRRQDWARLAANTRRLRE-MGSIRLHLDLIAG 360

Query: 339 FPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
            PGET      + D V  +   +          GT
Sbjct: 361 LPGETYAGVGESFDAVVALKPHEIQLGFLKLLKGT 395


>gi|304412158|ref|ZP_07393767.1| Radical SAM domain protein [Shewanella baltica OS183]
 gi|307306902|ref|ZP_07586642.1| Radical SAM domain protein [Shewanella baltica BA175]
 gi|304349424|gb|EFM13833.1| Radical SAM domain protein [Shewanella baltica OS183]
 gi|306910480|gb|EFN40910.1| Radical SAM domain protein [Shewanella baltica BA175]
          Length = 813

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 54/339 (15%), Positives = 108/339 (31%), Gaps = 62/339 (18%)

Query: 116 EILRRSPIVNVVVGPQTYYRLPELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNR-- 172
           E        + ++  +        L +    + V V+      +  E  ++ D  Y R  
Sbjct: 301 EDKYLYAHASRILHQEQNPGCARALFQPHGDRAVWVNPPAWPLNTDEMDAVFDLPYQRIP 360

Query: 173 -----KRGVTAF------LTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDN 220
                K  + A+      + I  GC   C+FC +    G  I SRS   +V E + + + 
Sbjct: 361 HPIYGKEKIPAYDMIKTSINIMRGCFGGCSFCSITEHEGRIIQSRSQESIVKEIKDIQEK 420

Query: 221 --GVCEIT--LLGQNVNAWR----------------------GKGLDGEKCTFSDLLYSL 254
             G   +   L G   N +R                         L  +     DL  + 
Sbjct: 421 VPGFTGVISDLGGPTANMYRLGCTSEKAEKTCRRLSCVFPSICGHLGTDHKHTIDLYRAA 480

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRRHTA 312
             + G+ ++   +    D++        +L    +  YL +  +   +  L  M +    
Sbjct: 481 RAVPGIKKVLIASGVRYDLAIEDPAYVKELVQHHVGGYLKIAPEHTEEGPLSKMMKPGMG 540

Query: 313 YE--YRQIIDRI-RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY--AQAFSFKY 367
               ++++ D+  +    +  +   FI   PG TD+D       + +  +   Q  +F  
Sbjct: 541 AYDKFKELFDKFSKEAGKEQFLIPYFISAHPGTTDEDMVNLALWLKERKFKLDQVQNFYP 600

Query: 368 SPRLG------TPGSNMLE--------QVDENVKAERLL 392
           SP         T  +++           V +  +  RL 
Sbjct: 601 SPMANATTIYHTELNSLKNVKHTSEVVSVPKKGRQRRLH 639


>gi|315505289|ref|YP_004084176.1| radical sam domain protein [Micromonospora sp. L5]
 gi|315411908|gb|ADU10025.1| Radical SAM domain protein [Micromonospora sp. L5]
          Length = 644

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 56/327 (17%), Positives = 103/327 (31%), Gaps = 47/327 (14%)

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
                L  +  +      V+  G    A+ E + R  P ++VVV  +      +LL    
Sbjct: 92  RAFGALAATYKQLNPQGWVIFGGTHVSAQAERVFRLYPEIDVVVNGEGELTFLDLLRARL 151

Query: 145 FG--------------KRVVDTDYSVEDKF--ERLSIVDGGY-----------NRKRGVT 177
            G               R   +  +  D+   E L I+   +            R R   
Sbjct: 152 AGVAPDALGDVQGISWHRADGSVVTNPDRPRIEDLDIIPSPFLTGAVELLDADGRFRYDV 211

Query: 178 AFLTIQEGCDKFCTFCVVPYTRG-IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR 236
           A      GC   C+FC      G    + S  ++  E       GV  +     N     
Sbjct: 212 ALFETNRGCPYKCSFCYWGGAVGQRVRAFSRERLRAELELFARCGVHTVVACDANF---- 267

Query: 237 GKGLDGEKCTFSDLLYSLSEIKGLVRLRY-----TTSHPRDMSDCLIKAHGDLDVLMPYL 291
                G      +L+  L +IK               +   +   +++   +   L    
Sbjct: 268 -----GMLPIDLELVDDLIDIKRRHGFPLAFESSWAKNKSKVFYEIVRRMKEAG-LRSSF 321

Query: 292 HLPVQSGSDRILKSMNRRH-TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
            L +QS +   L  M RR+    ++R ++  +   R  +   ++ I G PG+T + F A 
Sbjct: 322 TLALQSLNPDALTLMRRRNMKVNDWRDLVRWL--NREGLDCYAELIWGAPGDTVESFLAG 379

Query: 351 MDLVDKIGYAQAFSFKYSPRLGTPGSN 377
            D + +   ++   +       T  + 
Sbjct: 380 YDELAQH-VSRIAVYPIMLLPNTEYAE 405


>gi|255713686|ref|XP_002553125.1| KLTH0D09548p [Lachancea thermotolerans]
 gi|306755829|sp|C5DGZ5|LIPA_LACTC RecName: Full=Lipoyl synthase, mitochondrial; AltName: Full=Lipoate
           synthase; Short=LS; Short=Lip-syn; AltName: Full=Lipoic
           acid synthase; Flags: Precursor
 gi|238934505|emb|CAR22687.1| KLTH0D09548p [Lachancea thermotolerans]
          Length = 371

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 46/246 (18%), Positives = 91/246 (36%), Gaps = 14/246 (5%)

Query: 156 VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEAR 215
            E K   +S   GG +  +     + + + C + C FC V   R        ++  + A 
Sbjct: 108 EEAKCPNISECWGGGDSSKATATIMLLGDTCTRGCRFCSVKTNRAPSK-PDPAEPENTAE 166

Query: 216 KLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSD 275
            +   G+  + L   +    R    DG     ++ +  + + K    L  T S       
Sbjct: 167 AISRWGLGYVVLTTVD----RDDLADGGAHHLAETVCRI-KQKAPKTLVETLSGDFRGDL 221

Query: 276 CLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDF 335
            ++K      + + Y H  +++  D      +RR T  +   ++++ +   P +   +  
Sbjct: 222 EMVKVMAQSGLDV-YAH-NLETVKDLTPHVRDRRATYEQSLSVLNQAKKTVPTLITKTSL 279

Query: 336 IVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQ 395
           ++G  GETD+    T+  +  IG       +Y  R     +    +V E VK E+    +
Sbjct: 280 MLGL-GETDEQVLQTLQDLRAIGCDVVTFGQYM-RP----TKRHMKVVEYVKPEKFDYWR 333

Query: 396 KKLREQ 401
            K  E 
Sbjct: 334 DKALEL 339


>gi|217975126|ref|YP_002359877.1| hypothetical protein Sbal223_3981 [Shewanella baltica OS223]
 gi|217500261|gb|ACK48454.1| Radical SAM domain protein [Shewanella baltica OS223]
          Length = 812

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 54/339 (15%), Positives = 108/339 (31%), Gaps = 62/339 (18%)

Query: 116 EILRRSPIVNVVVGPQTYYRLPELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNR-- 172
           E        + ++  +        L +    + V V+      +  E  ++ D  Y R  
Sbjct: 301 EDKYLYAHASRILHQEQNPGCARALFQPHGDRAVWVNPPAWPLNTDEMDAVFDLPYQRIP 360

Query: 173 -----KRGVTAF------LTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDN 220
                K  + A+      + I  GC   C+FC +    G  I SRS   +V E + + + 
Sbjct: 361 HPIYGKEKIPAYDMIKTSINIMRGCFGGCSFCSITEHEGRIIQSRSQESIVKEIKDIQEK 420

Query: 221 --GVCEIT--LLGQNVNAWR----------------------GKGLDGEKCTFSDLLYSL 254
             G   +   L G   N +R                         L  +     DL  + 
Sbjct: 421 VPGFTGVISDLGGPTANMYRLGCTSEKAEKTCRRLSCVFPSICGHLGTDHKHTIDLYRAA 480

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRRHTA 312
             + G+ ++   +    D++        +L    +  YL +  +   +  L  M +    
Sbjct: 481 RAVPGIKKVLIASGVRYDLAIEDPAYVKELVQHHVGGYLKIAPEHTEEGPLSKMMKPGMG 540

Query: 313 YE--YRQIIDRI-RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY--AQAFSFKY 367
               ++++ D+  +    +  +   FI   PG TD+D       + +  +   Q  +F  
Sbjct: 541 AYDKFKELFDKFSKEAGKEQFLIPYFISAHPGTTDEDMVNLALWLKERKFKLDQVQNFYP 600

Query: 368 SPRLG------TPGSNMLE--------QVDENVKAERLL 392
           SP         T  +++           V +  +  RL 
Sbjct: 601 SPMANATTIYHTELNSLKNVKHTSEVVSVPKKGRQRRLH 639


>gi|153002559|ref|YP_001368240.1| hypothetical protein Shew185_4059 [Shewanella baltica OS185]
 gi|151367177|gb|ABS10177.1| Radical SAM domain protein [Shewanella baltica OS185]
          Length = 819

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 54/339 (15%), Positives = 108/339 (31%), Gaps = 62/339 (18%)

Query: 116 EILRRSPIVNVVVGPQTYYRLPELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNR-- 172
           E        + ++  +        L +    + V V+      +  E  ++ D  Y R  
Sbjct: 301 EDKYLYAHASRILHQEQNPGCARALFQPHGDRAVWVNPPAWPLNTDEMDAVFDLPYQRIP 360

Query: 173 -----KRGVTAF------LTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDN 220
                K  + A+      + I  GC   C+FC +    G  I SRS   +V E + + + 
Sbjct: 361 HPIYGKEKIPAYDMIKTSINIMRGCFGGCSFCSITEHEGRIIQSRSQESIVKEIKDIQEK 420

Query: 221 --GVCEIT--LLGQNVNAWR----------------------GKGLDGEKCTFSDLLYSL 254
             G   +   L G   N +R                         L  +     DL  + 
Sbjct: 421 VPGFTGVISDLGGPTANMYRLGCTSEKAEKTCRRLSCVFPSICGHLGTDHKHTIDLYRAA 480

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRRHTA 312
             + G+ ++   +    D++        +L    +  YL +  +   +  L  M +    
Sbjct: 481 RAVPGIKKVLIASGVRYDLAIEDPAYVKELVQHHVGGYLKIAPEHTEEGPLSKMMKPGMG 540

Query: 313 YE--YRQIIDRI-RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY--AQAFSFKY 367
               ++++ D+  +    +  +   FI   PG TD+D       + +  +   Q  +F  
Sbjct: 541 AYDKFKELFDKFSKEAGKEQFLIPYFISAHPGTTDEDMVNLALWLKERKFKLDQVQNFYP 600

Query: 368 SPRLG------TPGSNMLE--------QVDENVKAERLL 392
           SP         T  +++           V +  +  RL 
Sbjct: 601 SPMANATTIYHTELNSLKNVKHTSEVVSVPKKGRQRRLH 639


>gi|160877280|ref|YP_001556596.1| hypothetical protein Sbal195_4177 [Shewanella baltica OS195]
 gi|160862802|gb|ABX51336.1| Radical SAM domain protein [Shewanella baltica OS195]
 gi|315269485|gb|ADT96338.1| Radical SAM domain protein [Shewanella baltica OS678]
          Length = 807

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 54/339 (15%), Positives = 108/339 (31%), Gaps = 62/339 (18%)

Query: 116 EILRRSPIVNVVVGPQTYYRLPELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNR-- 172
           E        + ++  +        L +    + V V+      +  E  ++ D  Y R  
Sbjct: 301 EDKYLYAHASRILHQEQNPGCARALFQPHGDRAVWVNPPAWPLNTDEMDAVFDLPYQRIP 360

Query: 173 -----KRGVTAF------LTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDN 220
                K  + A+      + I  GC   C+FC +    G  I SRS   +V E + + + 
Sbjct: 361 HPIYGKEKIPAYDMIKTSINIMRGCFGGCSFCSITEHEGRIIQSRSQESIVKEIKDIQEK 420

Query: 221 --GVCEIT--LLGQNVNAWR----------------------GKGLDGEKCTFSDLLYSL 254
             G   +   L G   N +R                         L  +     DL  + 
Sbjct: 421 VPGFTGVISDLGGPTANMYRLGCTSEKAEKTCRRLSCVFPSICGHLGTDHKHTIDLYRAA 480

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRRHTA 312
             + G+ ++   +    D++        +L    +  YL +  +   +  L  M +    
Sbjct: 481 RAVPGIKKVLIASGVRYDLAIEDPAYVKELVQHHVGGYLKIAPEHTEEGPLSKMMKPGMG 540

Query: 313 YE--YRQIIDRI-RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY--AQAFSFKY 367
               ++++ D+  +    +  +   FI   PG TD+D       + +  +   Q  +F  
Sbjct: 541 AYDKFKELFDKFSKEAGKEQFLIPYFISAHPGTTDEDMVNLALWLKERKFKLDQVQNFYP 600

Query: 368 SPRLG------TPGSNMLE--------QVDENVKAERLL 392
           SP         T  +++           V +  +  RL 
Sbjct: 601 SPMANATTIYHTELNSLKNVKHTSEVVSVPKKGRQRRLH 639


>gi|126176276|ref|YP_001052425.1| hypothetical protein Sbal_4090 [Shewanella baltica OS155]
 gi|125999481|gb|ABN63556.1| Radical SAM N-terminal domain protein [Shewanella baltica OS155]
          Length = 816

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 54/339 (15%), Positives = 108/339 (31%), Gaps = 62/339 (18%)

Query: 116 EILRRSPIVNVVVGPQTYYRLPELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNR-- 172
           E        + ++  +        L +    + V V+      +  E  ++ D  Y R  
Sbjct: 301 EDKYLYAHASRILHQEQNPGCARALFQPHGDRAVWVNPPAWPLNTDEMDAVFDLPYQRIP 360

Query: 173 -----KRGVTAF------LTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDN 220
                K  + A+      + I  GC   C+FC +    G  I SRS   +V E + + + 
Sbjct: 361 HPIYGKEKIPAYDMIKTSINIMRGCFGGCSFCSITEHEGRIIQSRSQESIVKEIKDIQEK 420

Query: 221 --GVCEIT--LLGQNVNAWR----------------------GKGLDGEKCTFSDLLYSL 254
             G   +   L G   N +R                         L  +     DL  + 
Sbjct: 421 VPGFTGVISDLGGPTANMYRLGCTSEKAEKTCRRLSCVFPSICGHLGTDHKHTIDLYRAA 480

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRRHTA 312
             + G+ ++   +    D++        +L    +  YL +  +   +  L  M +    
Sbjct: 481 RAVPGIKKVLIASGVRYDLAIEDPAYVKELVQHHVGGYLKIAPEHTEEGPLSKMMKPGMG 540

Query: 313 YE--YRQIIDRI-RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY--AQAFSFKY 367
               ++++ D+  +    +  +   FI   PG TD+D       + +  +   Q  +F  
Sbjct: 541 AYDKFKELFDKFSKEAGKEQFLIPYFISAHPGTTDEDMVNLALWLKERKFKLDQVQNFYP 600

Query: 368 SPRLG------TPGSNMLE--------QVDENVKAERLL 392
           SP         T  +++           V +  +  RL 
Sbjct: 601 SPMANATTIYHTELNSLKNVKHTSEVVSVPKKGRQRRLH 639


>gi|288554015|ref|YP_003425950.1| lipoyl synthase [Bacillus pseudofirmus OF4]
 gi|288545175|gb|ADC49058.1| lipoyl synthase [Bacillus pseudofirmus OF4]
          Length = 304

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 39/214 (18%), Positives = 74/214 (34%), Gaps = 13/214 (6%)

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           ++V ++    +I +    RK     F+ + + C + C FC V      E+   L +    
Sbjct: 37  HTVCEEARCPNIHECWAVRK--TATFMILGDVCTRACRFCAVKTGLPNEL--DLQEPERV 92

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
           A  +   G+    +        R    DG    F++ + ++        +    S     
Sbjct: 93  ADSVEMMGLKHAVITAV----ARDDLKDGGAAVFAETVRAVRRKNPFCTIEVLPSDMLGN 148

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
            D L         +M +    V+  S      +  R T     + + R + + PDI   S
Sbjct: 149 FDSLKTLMDAKPNIMNHNIETVRRLSP----RVRARATYDRTLEFLRRAKEMNPDIPTKS 204

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
             ++G  GET ++   TMD +           +Y
Sbjct: 205 SLMIGL-GETREEIIETMDDLRANNVDIMTIGQY 237


>gi|301061594|ref|ZP_07202352.1| radical SAM domain protein [delta proteobacterium NaphS2]
 gi|300444287|gb|EFK08294.1| radical SAM domain protein [delta proteobacterium NaphS2]
          Length = 477

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 45/244 (18%), Positives = 76/244 (31%), Gaps = 22/244 (9%)

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRK-----RGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
            + D D      +E+L     GYN           A +    GC   C+FC         
Sbjct: 168 HIPDLDDLPFPAYEKLQGFPKGYNLPLFSYIHTPGATMVTSRGCPYQCSFCDRSVFSRGY 227

Query: 203 ISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
                + +   A  L    GV  + +        R +  +      S  L          
Sbjct: 228 RYNKAAYIYAHAAYLRKRFGVRHVNIYDDLFTTHRNRIAEFCTLLISKPLGM------QF 281

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
                  H  D    ++KA G L      L L +++G +  +            R  + R
Sbjct: 282 NCAVRVGHCDDELLEMLKAAGFL-----QLSLGIETGDETQMAIHKPGVHLEAVRDTVRR 336

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           I++    +     F++G PGET    R T      +G       K++P  G P   + + 
Sbjct: 337 IQAK--GLRAKGLFMMGLPGETRASIRKTTRFALSLGLDDMNMSKFTPFHGAP---LWDS 391

Query: 382 VDEN 385
           + + 
Sbjct: 392 IGDE 395


>gi|291287181|ref|YP_003503997.1| Radical SAM domain protein [Denitrovibrio acetiphilus DSM 12809]
 gi|290884341|gb|ADD68041.1| Radical SAM domain protein [Denitrovibrio acetiphilus DSM 12809]
          Length = 796

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 49/263 (18%), Positives = 88/263 (33%), Gaps = 29/263 (11%)

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
           R + T +S +   E+L +      + R     + I  GC + C FC           RS+
Sbjct: 208 RSIYTGFSQDTTIEKLIVPTIPAVQDRVA---VEISRGCTRGCRFCQAGVIYRPNRERSV 264

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
             +  +A   +            N        L      +S L   L  +  L   R  +
Sbjct: 265 DNIACDALTQLS-----------NTGYLETSLLSLSASDYSRLEELLVTMVKLTSSRKVS 313

Query: 268 SHPRDMSDCLIKA--HGDLDVLMPY-LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
                +    IK     +L  +      +  ++GS R+  ++N+  T       +++   
Sbjct: 314 LSLPSIRADRIKEFMFRELSKVRKSGFTIAPEAGSQRMRDAINKGLTEESILNAVEKASD 373

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF-------KYSPRLGTPGSN 377
              +      F++G PGET +D  A  +L  K    +   F        + P+  TP   
Sbjct: 374 AGWN-GAKLYFMIGLPGETMEDVLAIAELARKAKMLRKGRFNIKVSVSNFVPKSHTP-YQ 431

Query: 378 MLEQVDENV---KAERLLCLQKK 397
              Q   +    K + L  + KK
Sbjct: 432 WFGQNSGDDFFNKKKELKEVMKK 454


>gi|281412397|ref|YP_003346476.1| Radical SAM domain protein [Thermotoga naphthophila RKU-10]
 gi|281373500|gb|ADA67062.1| Radical SAM domain protein [Thermotoga naphthophila RKU-10]
          Length = 567

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 54/281 (19%), Positives = 95/281 (33%), Gaps = 54/281 (19%)

Query: 184 EGCDKFCTFCVVPYTRGIEIS-RSLSQVVDEARKLIDNGVCEITLL--GQNVNAWRGKGL 240
            GC   C+FC +   +   +S RS   +++E + L      + T+   G       G   
Sbjct: 301 RGCFGSCSFCALTQHQTTHVSYRSKDSILEEVKILTKKKDFKGTITDVGGPTANLYGSSC 360

Query: 241 DGEKCT----------------------FSDLLYSLSEIKGLVRLRYTTSHPRDM---SD 275
              +                        F  LL S+ +I G+  +  ++    D      
Sbjct: 361 SIRETKGQCQKFCLYPSVCKVVRPNHDEFISLLESIRKIPGVRNVFVSSGIRHDFVFAEK 420

Query: 276 CLIKAHGDLDVLMP-YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAIS-- 332
                  +L    P  L L  +    ++L  M +      + +   R  ++   +     
Sbjct: 421 DPDIFIKELLKYTPGQLKLAPEHAHPKVLSLMRKP-PVELFLEFKKRFETLAKKMGKRKY 479

Query: 333 --SDFIVGFPGETDDDFRATMDLV-DKIGYAQAFSFKYSPRLGTPGSNMLEQ-VD----E 384
               FIVG PGE   +     + +   +GY       ++P  GT  + M    VD    E
Sbjct: 480 VIGYFIVGHPGEGWRENNYLREFILKHLGYFPQQIQIFTPTPGTVSTAMYYSGVDPFTGE 539

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK 425
            V  ER L ++ +++E               VL +K G+EK
Sbjct: 540 KVHVERSLKVRNRMKEN--------------VLFKKDGREK 566


>gi|315185621|gb|EFU19389.1| Radical SAM domain protein [Spirochaeta thermophila DSM 6578]
          Length = 849

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 49/284 (17%), Positives = 101/284 (35%), Gaps = 30/284 (10%)

Query: 127 VVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGC 186
           V+G   +  +P      +  KR +   +     +    + +    +     A + I  GC
Sbjct: 197 VLGEDPHVWMPG----KQKAKRAIWMGFGEPRIYSYRPVPNIPAVQDH---AVVEIMRGC 249

Query: 187 DKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKC 245
            + C FC        +  +S S + +E R L +N G  EITL   +          G+  
Sbjct: 250 PQGCRFCHAGIFYRPQRVKSPSAIHEEVRHLHENLGYREITLASLSS---------GDYP 300

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRD--MSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
              DL+ SL+       L ++    +    +  L++  G        L   V++      
Sbjct: 301 GIFDLVRSLNREFAGRHLSFSLPSLKVSTFALELLEEIGKGKK--SGLTFAVETPYPEGQ 358

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPG--ETDDDFRATMDLVDKI---- 357
           + +N+     +   I+ R +     +A    F+VG P   E + +    ++ ++ I    
Sbjct: 359 RGLNKEVELEKVISILQRAKEKGWRLAKF-YFMVGLPYSIEDEREAERIVEYIETISRAT 417

Query: 358 GYA-QAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLRE 400
             +       + P+  TP      Q+       R+  ++ +L+ 
Sbjct: 418 RISIHMNIGTFVPKPHTP-FQWAPQLSYEEAKRRIFQVRDRLKR 460


>gi|186682743|ref|YP_001865939.1| radical SAM domain-containing protein [Nostoc punctiforme PCC
           73102]
 gi|186465195|gb|ACC80996.1| Radical SAM domain protein [Nostoc punctiforme PCC 73102]
          Length = 551

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 52/337 (15%), Positives = 105/337 (31%), Gaps = 44/337 (13%)

Query: 58  SMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEI 117
               AD ++++  HI++         + +I  L +   K        V+GC       E 
Sbjct: 97  DYQWADAVIVSGMHIQKP-------QINQINELAHRAGKITVVGGPSVSGC------PEY 143

Query: 118 LRRSPIVNVVVGPQTYYRLPELLER--ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRG 175
                I+++        R+ E L++   R  +++           E  +      +    
Sbjct: 144 YPEFDILHLGELGDASDRMIEYLDQNLERPQRQIRFETKERLPLTEFPTPAYHLLDIDDY 203

Query: 176 VTAFLTIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVCEITLLGQNVNA 234
             A +    GC   C FC +P   G     ++  QVV E   +  +G         N+ A
Sbjct: 204 FLANVQFSSGCPYRCEFCDIPELYGNSPRMKTPEQVVAELDAMRQSG---------NMGA 254

Query: 235 WRGKGLD--GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL- 291
                 +  G++     LL  L  I    R  Y      + +  L         L+  + 
Sbjct: 255 VYFVDDNFVGDRRAAMKLLPHL--IDWQKRNGYPIQFACEATLNL----AQSPKLLEMMR 308

Query: 292 -------HLPVQSGSDRILKSMNRRHT-AYEYRQIIDRIRSVRPDIAISSDFIVGFPGET 343
                     +++     L ++++    +    + I  + S    + + S  I+G   +T
Sbjct: 309 EAYFCTIFCGIETPEPDALHAISKDQNLSMPILKAIQVLNSY--GMEVVSGIIIGLDTDT 366

Query: 344 DDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
            +     ++ +                  TP    LE
Sbjct: 367 PETADRIIEFIRASQIPMLTINLLHALPRTPLWRRLE 403


>gi|308274510|emb|CBX31109.1| hypothetical protein N47_E46210 [uncultured Desulfobacterium sp.]
          Length = 477

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 39/208 (18%), Positives = 71/208 (34%), Gaps = 32/208 (15%)

Query: 175 GVTAFLTIQEGCDKFCTFCVVPY-TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVN 233
              A L    GC   C+FCV+P+   G  + RS   V DE   + +  +  +        
Sbjct: 203 PRVASLRTSIGCAFSCSFCVIPFLMHGKYLQRSPIDVADEIAAISEEHIYFV-------- 254

Query: 234 AWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL-- 291
                  D E     + +  ++E+     L       + +S            +      
Sbjct: 255 -------DDEMFLNPERVARIAEL-----LIERCIKKKYISWARSDTIVKYPEVFRIWKK 302

Query: 292 ------HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDD 345
                 ++ ++S     L   ++R       + I+ ++ +   I + + FIV  P  T D
Sbjct: 303 AGLELIYVGLESMDKIRLDEYSKRTDVETNGKAIEILKQL--GITLHATFIV-HPDFTRD 359

Query: 346 DFRATMDLVDKIGYAQAFSFKYSPRLGT 373
           DF+     V  +  A+      SP  GT
Sbjct: 360 DFKRLEKEVKGLCPAEVTFTVLSPSPGT 387


>gi|307327472|ref|ZP_07606658.1| Radical SAM domain protein [Streptomyces violaceusniger Tu 4113]
 gi|306886871|gb|EFN17871.1| Radical SAM domain protein [Streptomyces violaceusniger Tu 4113]
          Length = 601

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 61/318 (19%), Positives = 101/318 (31%), Gaps = 55/318 (17%)

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCV--VPYTRGIEISRS 206
           V DT  +   +          Y    G  A L    GC   C FC   VP  R       
Sbjct: 229 VPDTVTAQYLQLTEQHPAHFTYPITDGTAAGLHPVRGCLHTCHFCNLGVPPFRQA----P 284

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL-VRLRY 265
           L  +     +L    + +I +       +R +    E           +E +G  V    
Sbjct: 285 LDVLTAYVDQLEQLKIRKIIISAPTFTQYRHR---RELLDHILAYAKRAEAEGEKVTTII 341

Query: 266 TTSHPRDMSDCLIKAH---GDLDVLMPYLH---------LPVQSGSDRILKSMNRRHTAY 313
            +    +++   ++A    GD   L   LH         +  +  S  ++    +     
Sbjct: 342 GSVRADEITQDYLEAITELGDFGHLFTELHLTQARGIITIAPEWASHDLVALYGKTQKRE 401

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS--------- 364
              + +D  R       +   FIVG PGE + D  A  D   ++  A+            
Sbjct: 402 RVNKALDLCRQTGHVNTVMLYFIVGAPGELEADRLAIADYAQEVR-ARLGDGDANVIIKL 460

Query: 365 FKYSPRLGTPGSNM----LEQVDE--NVKAERLLCL--QKKLREQQV------------- 403
            ++ P+ GTP   +     + V E     A+RL  L  QK + E                
Sbjct: 461 HQFMPKPGTPTQRLKMADPDLVQEYGARIADRLRSLVGQKIVSEHYRVEQFAASRMHLEA 520

Query: 404 --SFNDACVGQIIEVLIE 419
             S  D  +G ++E L +
Sbjct: 521 VCSRGDRRIGHVLEDLYD 538


>gi|218779518|ref|YP_002430836.1| radical SAM domain protein [Desulfatibacillum alkenivorans AK-01]
 gi|218760902|gb|ACL03368.1| Radical SAM domain protein [Desulfatibacillum alkenivorans AK-01]
          Length = 456

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 41/260 (15%), Positives = 88/260 (33%), Gaps = 31/260 (11%)

Query: 183 QEGCDKF-----CTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWR 236
            +GC        C FC           R + Q+ +E   L D  GV  I  +  +    +
Sbjct: 203 SKGCSWRDKTGGCVFCA--RLEEGVRFRPIPQIWEEIALLKDRYGVNTIWDIADDNLNNK 260

Query: 237 GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQ 296
              ++  +                    +  S    +   +I     L   +  + L V+
Sbjct: 261 EWFIEFVESRPDSCRDM---------RFFIYSRVNCIKPWVIDYFHKLG--VDEVFLGVE 309

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
           SG +R+LK   +  T     + +  ++     +     F++G PGE  +    T+ +  +
Sbjct: 310 SGDNRLLKGSFKGQTRESALRALRILQD--GGVRFYPSFVLGLPGENVESMENTLSMCRE 367

Query: 357 IG----YAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFN--DACV 410
           I      ++  +    P  G+   +M   V E  +  + L +   +    +     ++  
Sbjct: 368 IREMGGLSRMSATILKPIPGSAAYDM---VLEKTRFGKDLAISDDVDLVFLEKYWIESMT 424

Query: 411 GQIIEVLIEKHGKEKGKLVG 430
           G      +E++  +   L+G
Sbjct: 425 GTTYYA-VEEYRDKINVLMG 443


>gi|170734231|ref|YP_001766178.1| lipoyl synthase [Burkholderia cenocepacia MC0-3]
 gi|169817473|gb|ACA92056.1| lipoic acid synthetase [Burkholderia cenocepacia MC0-3]
          Length = 330

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 77/221 (34%), Gaps = 12/221 (5%)

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
           + +  ++++    E  S  + G    +G   F+ + + C + C FC V + R   +    
Sbjct: 65  KTILREHNLHTVCEEASCPNIGECFGKGTATFMIMGDKCTRRCPFCDVGHGRPDPL--DA 122

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
            +  + AR +    +  + +   +    R    DG    F + +          R+   T
Sbjct: 123 DEPKNLARTIAALKLKYVVITSVD----RDDLRDGGAAHFVECIRETRAQSPDTRIEILT 178

Query: 268 SHPRDMSDCLIKAH-GDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
              R   D  I         +M +    V     R+ K            +++   +++ 
Sbjct: 179 PDFRGRLDRAISILNAAPPDVMNHNLETV----PRLYKEARPGSDYAHSLKLLKDFKALH 234

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           PD+A  S  +VG  GET+++    M  +           +Y
Sbjct: 235 PDVATKSGLMVGL-GETEEEILQVMRDLRAHDVDMLTIGQY 274


>gi|53715993|ref|YP_104884.1| radical SAM domain/B12 binding domain-containing protein
           [Burkholderia mallei ATCC 23344]
 gi|124381570|ref|YP_001025262.1| radical SAM domain/B12 binding domain-containing protein
           [Burkholderia mallei NCTC 10229]
 gi|254359561|ref|ZP_04975833.1| radical SAM domain/B12 binding domain protein [Burkholderia mallei
           2002721280]
 gi|52421963|gb|AAU45533.1| radical SAM domain/B12 binding domain protein [Burkholderia mallei
           ATCC 23344]
 gi|148028748|gb|EDK86708.1| radical SAM domain/B12 binding domain protein [Burkholderia mallei
           2002721280]
 gi|261826387|gb|ABN00572.2| radical SAM domain/B12 binding domain protein [Burkholderia mallei
           NCTC 10229]
          Length = 651

 Score = 64.6 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 52/312 (16%), Positives = 100/312 (32%), Gaps = 54/312 (17%)

Query: 95  IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF--------- 145
            +   DL V++ G  A     +IL R P  +++V  +    LP +L+             
Sbjct: 102 KRREPDLPVLLGGPHATMLHRQILERFPQFDIIVRYEADEILPAVLDCLEQRTFDVIPGL 161

Query: 146 ----------------GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKF 189
                             +V + D      ++   + D G++  R     +    GC   
Sbjct: 162 SWRATGRGAPLRFTDGKPKVEELDRLPIASYDHYPVDDLGFSMLR-----IEAGRGCPFA 216

Query: 190 CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSD 249
           CTFC        + S  L        +L                +      D        
Sbjct: 217 CTFCSTAGFF--QRSFRLKSAERLVHELDILHRRYRV-------SDFKLDHDMFTVNRHK 267

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
           ++     + G       ++    + + L++   D       L+  V++GS+R+     +R
Sbjct: 268 VMAFCEAVAGRGYRWRASARIDCVDEALLRKMADAG--CVNLYFGVETGSERMQTICRKR 325

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSD--FIVGFPGETDDDFRATMDLVDKIG-----YAQA 362
                  ++++ I +      I +   FI G+P E+  D   T+D++ +         Q 
Sbjct: 326 ----LDLRLVEPILAAADSFGIETTASFITGYPQESGQDQDDTLDMIGRCARRPSCLTQL 381

Query: 363 FSFKYSPRLGTP 374
                 P  GTP
Sbjct: 382 HMLA--PEPGTP 391


>gi|312112138|ref|YP_003990454.1| coproporphyrinogen dehydrogenase [Geobacillus sp. Y4.1MC1]
 gi|311217239|gb|ADP75843.1| Coproporphyrinogen dehydrogenase [Geobacillus sp. Y4.1MC1]
          Length = 501

 Score = 64.6 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 66/385 (17%), Positives = 131/385 (34%), Gaps = 52/385 (13%)

Query: 23  VPQRFFVKSYGCQMNVYDS-------LRMEDMFFSQGYERVNSM-DDADLIVLNT----- 69
           +P R  ++        +D+         +  +FF + YE V    D AD+ V  +     
Sbjct: 1   MPLRIHIEGL------HDTGRFQRPLEVITGLFFEK-YELVLEPGDGADITVAFSISGDK 53

Query: 70  -CHIREKAAEKVYSFLGRIRNLK--------NSRIKEGGDLLVVVAGCVAQAEGEEILRR 120
             H+R   +EK         + K          R K+    ++ V   + Q     I + 
Sbjct: 54  RVHVRGILSEKSTENKYEANHEKDVSGSFTEKERFKQVKYAVLSVYVTLLQQYTGLIQQW 113

Query: 121 SPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFE--------RLSIVDGGYNR 172
             +  +      +  L   L +    +++ +     ++K E        +L++V   Y+ 
Sbjct: 114 GVLTGIRPVKLLHKMLRSGLSQEEAHRQLREEYLVTDEKIELMQEIVDRQLAVVPDLYDL 173

Query: 173 KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNV 232
              V+ ++ I   C   C +C  P         S+   +      +      +   G N+
Sbjct: 174 AHEVSIYIGIPF-CPTKCAYCTFPAYAINGRQGSVDAFLAGLHYEMREIGRFLKERGINI 232

Query: 233 NAWRGKGLDGEKCTFS-DLLYSLSEI-----KGLVRLRYTTSH---PRDMSDCLIKAHGD 283
                 G  G   + S + +  L  +       + R+R  T     P  ++   +     
Sbjct: 233 TTIYYGG--GTPTSISAEEMDQLYAVMYEAFPNIERVREITVEAGRPDTITPEKLNVLKK 290

Query: 284 LDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGET 343
            ++    + +  QS     LK++ R HT  E  +     R +  +  I+ D I+G PGE 
Sbjct: 291 WNI--GRISINPQSYIQETLKAIGRHHTVDETIEKFHLAREMGMN-NINMDVIIGLPGEG 347

Query: 344 DDDFRATMDLVDKIGYAQAFSFKYS 368
             +F  T+   +K+          S
Sbjct: 348 IKEFSHTLAQTEKLMPESLTVHTLS 372


>gi|49088130|gb|AAT51535.1| PA3996 [synthetic construct]
          Length = 328

 Score = 64.6 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 35/214 (16%), Positives = 76/214 (35%), Gaps = 10/214 (4%)

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           + +    E  S  + G     G   F+ + + C + C FC V + R   +   + +  + 
Sbjct: 68  HKLHSVCEEASCPNLGECFSGGTATFMIMGDICTRRCPFCDVGHGRPKPL--DVDEPTNL 125

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
           A  + D  +  + +   +    R    DG    F+D L  + ++   ++L       R  
Sbjct: 126 AIAIADLRLKYVVITSVD----RDDLRDGGAQHFADCLREIRKLSPGIQLETLVPDYRGR 181

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
            D  ++   +     P +         R+ +S            ++ + + + P +   S
Sbjct: 182 MDIALEITANEP---PDVFNHNLETVPRLYRSSRPGSDFEWSLDLLQKFKQMVPHVPTKS 238

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
             ++G  GETDD+    M  + +         +Y
Sbjct: 239 GLMLGL-GETDDEVIEVMQRMREHDIDMLTLGQY 271


>gi|188589669|ref|YP_001921248.1| hypothetical protein CLH_1867 [Clostridium botulinum E3 str. Alaska
           E43]
 gi|188499950|gb|ACD53086.1| radical SAM domain protein [Clostridium botulinum E3 str. Alaska
           E43]
          Length = 658

 Score = 64.6 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 59/407 (14%), Positives = 127/407 (31%), Gaps = 72/407 (17%)

Query: 69  TCHIREK-AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVV 127
           TC++ E+    + Y  +   + + N ++K      V                      ++
Sbjct: 202 TCYVTEQINDLEDYIEIPSYKEVCNDKVKYADASRVQYLEQDPVRGK-----------II 250

Query: 128 VGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTI----- 182
           V       L + +      +  +D+ Y +        + +G      G++A   +     
Sbjct: 251 VQKHANKYLIQNIPEMPLNREELDSVYDLPYMKNYHPVYEGM----GGISAIEEVKFSTV 306

Query: 183 -QEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLID---------------NGVCEI 225
              GC   C FC + + +G  + SRS   +++E  ++                     + 
Sbjct: 307 SSRGCFGNCNFCAITFHQGRIVQSRSKESILNEVEEITKLPDFKGYIHDVGGPTANFRKP 366

Query: 226 TLLGQ-NVNAWR---------GKGLDGEKCTFSDLLYSLSEIKGLV--------RLRYTT 267
               Q  + A +          K ++ +   + DLL ++ ++  +         R  Y  
Sbjct: 367 ACSKQLTLGACKAKECLYPSPCKNMEVDHSEYLDLLRAIRKVPKVKKAFVRSGLRYDYIM 426

Query: 268 SHPRD-MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
           +   D     L++ H     +   L +  +  S   LK M +  +   Y +  ++  S+ 
Sbjct: 427 ADKDDTFFKELVEYH-----VSGKLKVAPEHVSKDTLKYMGKP-SGKTYDKFTEKFYSIN 480

Query: 327 PDIA----ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ- 381
             +     I    +   PG T        + +  I Y       + P  GT  + M    
Sbjct: 481 NKLGKKQFIVPYLMSSHPGSTLKSAIELAEYLRDINYQPEQVQDFYPTPGTLSTTMYYTG 540

Query: 382 VDENVKAE----RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE 424
           +D     E    +    +   R      N      + E L+E   ++
Sbjct: 541 LDPLTMKEVYVPKTKHDKAMQRALLQYKNPKYYTLVYEALVEGGRED 587


>gi|107023819|ref|YP_622146.1| lipoyl synthase [Burkholderia cenocepacia AU 1054]
 gi|116690905|ref|YP_836528.1| lipoyl synthase [Burkholderia cenocepacia HI2424]
 gi|254247091|ref|ZP_04940412.1| Lipoate synthase [Burkholderia cenocepacia PC184]
 gi|105894008|gb|ABF77173.1| lipoic acid synthetase [Burkholderia cenocepacia AU 1054]
 gi|116648994|gb|ABK09635.1| lipoic acid synthetase [Burkholderia cenocepacia HI2424]
 gi|124871867|gb|EAY63583.1| Lipoate synthase [Burkholderia cenocepacia PC184]
          Length = 330

 Score = 64.6 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 77/221 (34%), Gaps = 12/221 (5%)

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
           + +  ++++    E  S  + G    +G   F+ + + C + C FC V + R   +    
Sbjct: 65  KTILREHNLHTVCEEASCPNIGECFGKGTATFMIMGDKCTRRCPFCDVGHGRPDPL--DA 122

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
            +  + AR +    +  + +   +    R    DG    F + +          R+   T
Sbjct: 123 DEPKNLARTIAALKLKYVVITSVD----RDDLRDGGAAHFVECIRETRAQSPDTRIEILT 178

Query: 268 SHPRDMSDCLIKAH-GDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
              R   D  I         +M +    V     R+ K            +++   +++ 
Sbjct: 179 PDFRGRLDRAISILNAAPPDVMNHNLETV----PRLYKEARPGSDYAHSLKLLKDFKALH 234

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           PD+A  S  +VG  GET+++    M  +           +Y
Sbjct: 235 PDVATKSGLMVGL-GETEEEILQVMRDLRAHDVDMLTIGQY 274


>gi|296387452|ref|ZP_06876951.1| lipoyl synthase [Pseudomonas aeruginosa PAb1]
 gi|313109436|ref|ZP_07795396.1| Lipoate synthase [Pseudomonas aeruginosa 39016]
 gi|310881898|gb|EFQ40492.1| Lipoate synthase [Pseudomonas aeruginosa 39016]
          Length = 323

 Score = 64.6 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 35/214 (16%), Positives = 76/214 (35%), Gaps = 10/214 (4%)

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           + +    E  S  + G     G   F+ + + C + C FC V + R   +   + +  + 
Sbjct: 64  HKLHSVCEEASCPNLGECFSGGTATFMIMGDICTRRCPFCDVGHGRPKPL--DVDEPTNL 121

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
           A  + D  +  + +   +    R    DG    F+D L  + ++   ++L       R  
Sbjct: 122 AIAIADLRLKYVVITSVD----RDDLRDGGAQHFADCLREIRKLSPGIQLETLVPDYRGR 177

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
            D  ++   +     P +         R+ +S            ++ + + + P +   S
Sbjct: 178 MDIALEITANEP---PDVFNHNLETVPRLYRSSRPGSDFEWSLDLLQKFKQMVPHVPTKS 234

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
             ++G  GETDD+    M  + +         +Y
Sbjct: 235 GLMLGL-GETDDEVIEVMQRMREHDIDMLTLGQY 267


>gi|149924412|ref|ZP_01912777.1| hypothetical protein PPSIR1_09301 [Plesiocystis pacifica SIR-1]
 gi|149814719|gb|EDM74293.1| hypothetical protein PPSIR1_09301 [Plesiocystis pacifica SIR-1]
          Length = 995

 Score = 64.6 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 61/363 (16%), Positives = 120/363 (33%), Gaps = 47/363 (12%)

Query: 74  EKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTY 133
           E+    +   +GR+R    +R++    +  +    V +    E   R+ +  VV   +  
Sbjct: 176 EETLTGMLRTIGRMRQEGRARVEILAAIAQIPGIYVPRFYRVEEEPRTGLQVVVGRTEEG 235

Query: 134 YRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC 193
                 L      +RV   D        R  +        R   A + I  GC + C FC
Sbjct: 236 LA----LGAPASVERVFVRDLGEFKFPTRFPVPYAEAIFDR---ASVEITRGCTEGCRFC 288

Query: 194 VVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLY 252
                      RS   +++   +  D  G  E +L   +                  L+ 
Sbjct: 289 QAGMIYRPVRERSPEDIIEAVLEGTDAGGFDEASLTALSTADVSCID-----PLIKALVP 343

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
            L++ K  V L   +     +++ ++     + +    L    ++G+ R+   +N+  + 
Sbjct: 344 ELAKRK--VSLGIASLRAYGLNESMLDEIKKVGI--DGLTFAPEAGTQRMRNVINKNVSD 399

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFR---ATMDLVDKIGYAQ-------- 361
            +      RI   R    +   FI+G P ETD+D      T  +V ++  +         
Sbjct: 400 EDVLASAKRIFE-RGYSRMKMYFIMGLPTETDEDVAGIVETGRMVRQLAASMVREGVVEQ 458

Query: 362 -----AFSFKYSPRLGTP--GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVG-QI 413
                    ++ P+  TP   + M            +  L+ K+   +     A VG + 
Sbjct: 459 LPNITVSVSQHVPKPHTPFQWAAMDS----------MEDLESKVSLLRDQAKRAKVGCKT 508

Query: 414 IEV 416
            +V
Sbjct: 509 HDV 511


>gi|113971997|ref|YP_735790.1| hypothetical protein Shewmr4_3670 [Shewanella sp. MR-4]
 gi|113886681|gb|ABI40733.1| Radical SAM N-terminal domain protein [Shewanella sp. MR-4]
          Length = 781

 Score = 64.6 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 54/339 (15%), Positives = 108/339 (31%), Gaps = 62/339 (18%)

Query: 116 EILRRSPIVNVVVGPQTYYRLPELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNR-- 172
           E        + ++  +        L +    + V V+      +  E  ++ D  Y R  
Sbjct: 301 EDKYLYAHASRILHQEQNPGCARALFQPHGDRGVWVNPPAWPLNTDEMDAVFDLPYQRVP 360

Query: 173 -----KRGVTAF------LTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDN 220
                K  + A+      + I  GC   C+FC +    G  I SRS   ++ E + + D 
Sbjct: 361 HPAYGKDKIPAYDMIKTSINIMRGCFGGCSFCSITEHEGRIIQSRSQESIIKEIKDIQDK 420

Query: 221 --GVCEIT--LLGQNVNAWR----------------------GKGLDGEKCTFSDLLYSL 254
             G   +   L G   N +R                         L  +     DL  + 
Sbjct: 421 VPGFTGVISDLGGPTANMYRLGCTSEKAEKTCRRLSCVYPSICGHLGTDHKHTIDLYRAA 480

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRRHTA 312
             + G+ ++   +    D++        +L    +  YL +  +   +  L  M +    
Sbjct: 481 RAVPGIKKILIASGVRYDLAIEDPAYVKELVQHHVGGYLKIAPEHTEEGPLSKMMKPGMG 540

Query: 313 YE--YRQIIDRI-RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY--AQAFSFKY 367
               ++++ D+  +    +  +   FI   PG TD+D       + +  +   Q  +F  
Sbjct: 541 AYDKFKELFDKYSKEAGKEQFLIPYFISAHPGTTDEDMLNLALWLKERKFKLDQVQNFYP 600

Query: 368 SPRLG------TPGSNMLE--------QVDENVKAERLL 392
           SP         T  +++           V +  +  RL 
Sbjct: 601 SPMANATTIYHTELNSLKNVKHTSEVVPVPKKGRQRRLH 639


>gi|114045787|ref|YP_736337.1| hypothetical protein Shewmr7_0275 [Shewanella sp. MR-7]
 gi|113887229|gb|ABI41280.1| Radical SAM N-terminal domain protein [Shewanella sp. MR-7]
          Length = 781

 Score = 64.6 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 54/339 (15%), Positives = 108/339 (31%), Gaps = 62/339 (18%)

Query: 116 EILRRSPIVNVVVGPQTYYRLPELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNR-- 172
           E        + ++  +        L +    + V V+      +  E  ++ D  Y R  
Sbjct: 301 EDKYLYAHASRILHQEQNPGCARALFQPHGDRGVWVNPPAWPLNTDEMDAVFDLPYQRVP 360

Query: 173 -----KRGVTAF------LTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDN 220
                K  + A+      + I  GC   C+FC +    G  I SRS   ++ E + + D 
Sbjct: 361 HPAYGKDKIPAYDMIKTSINIMRGCFGGCSFCSITEHEGRIIQSRSQESIIKEIKDIQDK 420

Query: 221 --GVCEIT--LLGQNVNAWR----------------------GKGLDGEKCTFSDLLYSL 254
             G   +   L G   N +R                         L  +     DL  + 
Sbjct: 421 VPGFTGVISDLGGPTANMYRLGCTSEKAEKTCRRLSCVYPSICGHLGTDHKHTIDLYRAA 480

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRRHTA 312
             + G+ ++   +    D++        +L    +  YL +  +   +  L  M +    
Sbjct: 481 RAVPGIKKILIASGVRYDLAIEDPAYVKELVQHHVGGYLKIAPEHTEEGPLSKMMKPGMG 540

Query: 313 YE--YRQIIDRI-RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY--AQAFSFKY 367
               ++++ D+  +    +  +   FI   PG TD+D       + +  +   Q  +F  
Sbjct: 541 AYDKFKELFDKYSKEAGKEQFLIPYFISAHPGTTDEDMLNLALWLKERKFKLDQVQNFYP 600

Query: 368 SPRLG------TPGSNMLE--------QVDENVKAERLL 392
           SP         T  +++           V +  +  RL 
Sbjct: 601 SPMANATTIYHTELNSLKNVKHTSEVVPVPKKGRQRRLH 639


>gi|15599191|ref|NP_252685.1| lipoyl synthase [Pseudomonas aeruginosa PAO1]
 gi|107103511|ref|ZP_01367429.1| hypothetical protein PaerPA_01004581 [Pseudomonas aeruginosa PACS2]
 gi|116052034|ref|YP_789123.1| lipoyl synthase [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218889723|ref|YP_002438587.1| lipoyl synthase [Pseudomonas aeruginosa LESB58]
 gi|254236888|ref|ZP_04930211.1| lipoate synthase [Pseudomonas aeruginosa C3719]
 gi|254242680|ref|ZP_04936002.1| lipoate synthase [Pseudomonas aeruginosa 2192]
 gi|22001795|sp|Q9HX25|LIPA_PSEAE RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|122261181|sp|Q02SG3|LIPA_PSEAB RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|226737641|sp|B7V9C1|LIPA_PSEA8 RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|9950188|gb|AAG07383.1|AE004817_7 lipoate synthase [Pseudomonas aeruginosa PAO1]
 gi|115587255|gb|ABJ13270.1| Lipoate synthase [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126168819|gb|EAZ54330.1| lipoate synthase [Pseudomonas aeruginosa C3719]
 gi|126196058|gb|EAZ60121.1| lipoate synthase [Pseudomonas aeruginosa 2192]
 gi|218769946|emb|CAW25707.1| lipoate synthase [Pseudomonas aeruginosa LESB58]
          Length = 327

 Score = 64.6 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 35/214 (16%), Positives = 76/214 (35%), Gaps = 10/214 (4%)

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           + +    E  S  + G     G   F+ + + C + C FC V + R   +   + +  + 
Sbjct: 68  HKLHSVCEEASCPNLGECFSGGTATFMIMGDICTRRCPFCDVGHGRPKPL--DVDEPTNL 125

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
           A  + D  +  + +   +    R    DG    F+D L  + ++   ++L       R  
Sbjct: 126 AIAIADLRLKYVVITSVD----RDDLRDGGAQHFADCLREIRKLSPGIQLETLVPDYRGR 181

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
            D  ++   +     P +         R+ +S            ++ + + + P +   S
Sbjct: 182 MDIALEITANEP---PDVFNHNLETVPRLYRSSRPGSDFEWSLDLLQKFKQMVPHVPTKS 238

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
             ++G  GETDD+    M  + +         +Y
Sbjct: 239 GLMLGL-GETDDEVIEVMQRMREHDIDMLTLGQY 271


>gi|148238703|ref|YP_001224090.1| Fe-S oxidoreductase [Synechococcus sp. WH 7803]
 gi|147847242|emb|CAK22793.1| Fe-S oxidoreductase [Synechococcus sp. WH 7803]
          Length = 538

 Score = 64.6 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 76/224 (33%), Gaps = 13/224 (5%)

Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
           P L+      +     DY   D    +      Y         +  + GC   C +CV  
Sbjct: 214 PGLIHEQPESRPKTACDY---DYIASIWPQLDWYLEGGDFYVGVQTKRGCPHNCCYCVYT 270

Query: 197 YTRGIEISR-SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
              G ++    + +VV E R+L D GV             R    D +     +LL ++ 
Sbjct: 271 VVEGKQVRLNPVDEVVKEMRQLYDRGVRGFWFTDAQFIPARRYIEDAK-----ELLRAI- 324

Query: 256 EIKGLVRLRY-TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
           + +GL  +R+       ++   L +   D    M Y  + + SGS  +++ M   +    
Sbjct: 325 KAEGLTDIRWAAYIRADNLDPELAQLMVDTG--MSYFEIGITSGSQELVRKMRMGYNLRT 382

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
                  +     +  +S ++      E  +  R T+    ++ 
Sbjct: 383 VLDSCRMLAEAGFNDHVSVNYSFNVIDERPETIRQTVAYHRELE 426


>gi|326905968|gb|EGE52901.1| methyltransferase/methylase [Mycobacterium tuberculosis W-148]
          Length = 437

 Score = 64.6 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 60/323 (18%), Positives = 116/323 (35%), Gaps = 35/323 (10%)

Query: 79  KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVN-VVVGPQTY---- 133
                   +  L     +    + +V+   +A    E ILR+    + VVVG        
Sbjct: 50  SCIDTFPEVLWLAQRARQAWDGVRIVIGNAMATLNYERILRQHDCFDYVVVGDGEVAFTK 109

Query: 134 -----------YRLPELLERARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLT 181
                        +P L  R+  G+ +      V+ D+  R +  +       G  A + 
Sbjct: 110 LALALANDAAVDDVPGLARRSEQGQILRTPSSLVDLDELPRPARDELPTVLADGFAASVF 169

Query: 182 IQEGCDKFCTFC---VVPYTRGI--EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR 236
              GC   CTFC    +    G     ++S+  VVDE   L+ +       +  ++   +
Sbjct: 170 STRGCPYRCTFCGTGAMSAMLGKDSYRAKSVDAVVDEIDYLVSDYDVNFLSITDDLFISK 229

Query: 237 GKGLDGEKCTFSD-LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPV 295
             G       F++ +L     +  +V +R  +    D+   L +A       +  + + V
Sbjct: 230 HPGSQQRAADFANAVLRRGISVNFMVDIRLDSVVDLDLFKHLHRA------GLRRVFIGV 283

Query: 296 QSGSDRILKSMNRR--HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
           ++GS   L++  ++      +    I+ ++ +  D+   +  I+  P    D+ R T+ L
Sbjct: 284 ETGSYEQLRAYRKQILTRGQDAADTINALQQLGIDVIPGT--IMFHPTVQPDELRETVRL 341

Query: 354 VDKIGYAQAFSFKYS--PRLGTP 374
           +    Y   F F     P  GTP
Sbjct: 342 LRATKYTVGFKFMSRIVPYPGTP 364


>gi|308231494|ref|ZP_07412640.2| methyltransferase/methylase [Mycobacterium tuberculosis SUMu001]
 gi|308369334|ref|ZP_07417383.2| methyltransferase/methylase [Mycobacterium tuberculosis SUMu002]
 gi|308370345|ref|ZP_07421156.2| methyltransferase/methylase [Mycobacterium tuberculosis SUMu003]
 gi|308371619|ref|ZP_07425525.2| methyltransferase/methylase [Mycobacterium tuberculosis SUMu004]
 gi|308372836|ref|ZP_07430060.2| methyltransferase/methylase [Mycobacterium tuberculosis SUMu005]
 gi|308373916|ref|ZP_07434102.2| methyltransferase/methylase [Mycobacterium tuberculosis SUMu006]
 gi|308375100|ref|ZP_07442678.2| methyltransferase/methylase [Mycobacterium tuberculosis SUMu007]
 gi|308376337|ref|ZP_07438465.2| methyltransferase/methylase [Mycobacterium tuberculosis SUMu008]
 gi|308378579|ref|ZP_07483066.2| methyltransferase/methylase [Mycobacterium tuberculosis SUMu009]
 gi|308379724|ref|ZP_07487297.2| methyltransferase/methylase [Mycobacterium tuberculosis SUMu010]
 gi|308380926|ref|ZP_07491516.2| methyltransferase/methylase [Mycobacterium tuberculosis SUMu011]
 gi|308217136|gb|EFO76535.1| methyltransferase/methylase [Mycobacterium tuberculosis SUMu001]
 gi|308327974|gb|EFP16825.1| methyltransferase/methylase [Mycobacterium tuberculosis SUMu002]
 gi|308332354|gb|EFP21205.1| methyltransferase/methylase [Mycobacterium tuberculosis SUMu003]
 gi|308336106|gb|EFP24957.1| methyltransferase/methylase [Mycobacterium tuberculosis SUMu004]
 gi|308339737|gb|EFP28588.1| methyltransferase/methylase [Mycobacterium tuberculosis SUMu005]
 gi|308343742|gb|EFP32593.1| methyltransferase/methylase [Mycobacterium tuberculosis SUMu006]
 gi|308347463|gb|EFP36314.1| methyltransferase/methylase [Mycobacterium tuberculosis SUMu007]
 gi|308351513|gb|EFP40364.1| methyltransferase/methylase [Mycobacterium tuberculosis SUMu008]
 gi|308352089|gb|EFP40940.1| methyltransferase/methylase [Mycobacterium tuberculosis SUMu009]
 gi|308356039|gb|EFP44890.1| methyltransferase/methylase [Mycobacterium tuberculosis SUMu010]
 gi|308359995|gb|EFP48846.1| methyltransferase/methylase [Mycobacterium tuberculosis SUMu011]
          Length = 477

 Score = 64.6 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 60/323 (18%), Positives = 116/323 (35%), Gaps = 35/323 (10%)

Query: 79  KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVN-VVVGPQTY---- 133
                   +  L     +    + +V+   +A    E ILR+    + VVVG        
Sbjct: 90  SCIDTFPEVLWLAQRARQAWDGVRIVIGNAMATLNYERILRQHDCFDYVVVGDGEVAFTK 149

Query: 134 -----------YRLPELLERARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLT 181
                        +P L  R+  G+ +      V+ D+  R +  +       G  A + 
Sbjct: 150 LALALANDAAVDDVPGLARRSEQGQILRTPSSLVDLDELPRPARDELPTVLADGFAASVF 209

Query: 182 IQEGCDKFCTFC---VVPYTRGI--EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR 236
              GC   CTFC    +    G     ++S+  VVDE   L+ +       +  ++   +
Sbjct: 210 STRGCPYRCTFCGTGAMSAMLGKDSYRAKSVDAVVDEIDYLVSDYDVNFLSITDDLFISK 269

Query: 237 GKGLDGEKCTFSD-LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPV 295
             G       F++ +L     +  +V +R  +    D+   L +A       +  + + V
Sbjct: 270 HPGSQQRAADFANAVLRRGISVNFMVDIRLDSVVDLDLFKHLHRA------GLRRVFIGV 323

Query: 296 QSGSDRILKSMNRR--HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
           ++GS   L++  ++      +    I+ ++ +  D+   +  I+  P    D+ R T+ L
Sbjct: 324 ETGSYEQLRAYRKQILTRGQDAADTINALQQLGIDVIPGT--IMFHPTVQPDELRETVRL 381

Query: 354 VDKIGYAQAFSFKYS--PRLGTP 374
           +    Y   F F     P  GTP
Sbjct: 382 LRATKYTVGFKFMSRIVPYPGTP 404


>gi|302868331|ref|YP_003836968.1| radical SAM domain-containing protein [Micromonospora aurantiaca
           ATCC 27029]
 gi|302571190|gb|ADL47392.1| Radical SAM domain protein [Micromonospora aurantiaca ATCC 27029]
          Length = 644

 Score = 64.6 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 55/327 (16%), Positives = 103/327 (31%), Gaps = 47/327 (14%)

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
                L  +  +      V+  G    A+ + + R  P ++VVV  +      +LL    
Sbjct: 92  RAFGALAATYKQLNPQGWVIFGGTHVSAQADRVFRLYPEIDVVVNGEGELTFLDLLRARL 151

Query: 145 FG--------------KRVVDTDYSVEDKF--ERLSIVDGGY-----------NRKRGVT 177
            G               R   +  +  D+   E L I+   +            R R   
Sbjct: 152 AGVAPDALGDVQGISWHRADGSVVTNPDRPRIEDLDIIPSPFLTGAVDLLDADGRFRYDV 211

Query: 178 AFLTIQEGCDKFCTFCVVPYTRG-IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR 236
           A      GC   C+FC      G    + S  ++  E       GV  +     N     
Sbjct: 212 ALFETNRGCPYKCSFCYWGGAVGQRVRAFSRERLRAELELFARCGVHTVVACDANF---- 267

Query: 237 GKGLDGEKCTFSDLLYSLSEIKGLVRLRY-----TTSHPRDMSDCLIKAHGDLDVLMPYL 291
                G      +L+  L +IK               +   +   +++   +   L    
Sbjct: 268 -----GMLPIDLELVDDLIDIKRRHGFPLAFESSWAKNKSKVFYEIVRRMKEAG-LRSSF 321

Query: 292 HLPVQSGSDRILKSMNRRH-TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
            L +QS +   L  M RR+    ++R ++  +   R  +   ++ I G PG+T + F A 
Sbjct: 322 TLALQSLNPDALTLMRRRNMKVNDWRDLVRWL--NREGLDCYAELIWGAPGDTVESFLAG 379

Query: 351 MDLVDKIGYAQAFSFKYSPRLGTPGSN 377
            D + +   ++   +       T  + 
Sbjct: 380 YDELAQH-VSRIAVYPIMLLPNTEYAE 405


>gi|15607354|ref|NP_214727.1| methyltransferase (methylase) [Mycobacterium tuberculosis H37Rv]
 gi|15839593|ref|NP_334630.1| methyltransferase, putative [Mycobacterium tuberculosis CDC1551]
 gi|31791391|ref|NP_853884.1| methyltransferase (methylase) [Mycobacterium bovis AF2122/97]
 gi|121636125|ref|YP_976348.1| putative methyltransferase [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|148659977|ref|YP_001281500.1| putative methyltransferase [Mycobacterium tuberculosis H37Ra]
 gi|148821406|ref|YP_001286160.1| methyltransferase [Mycobacterium tuberculosis F11]
 gi|215406206|ref|ZP_03418387.1| methyltransferase [Mycobacterium tuberculosis 02_1987]
 gi|215414081|ref|ZP_03422738.1| methyltransferase [Mycobacterium tuberculosis 94_M4241A]
 gi|215448494|ref|ZP_03435246.1| methyltransferase [Mycobacterium tuberculosis T85]
 gi|218755950|ref|ZP_03534746.1| methyltransferase [Mycobacterium tuberculosis GM 1503]
 gi|224988598|ref|YP_002643285.1| putative methyltransferase [Mycobacterium bovis BCG str. Tokyo 172]
 gi|254233598|ref|ZP_04926924.1| hypothetical protein TBCG_00211 [Mycobacterium tuberculosis C]
 gi|254549152|ref|ZP_05139599.1| putative methyltransferase [Mycobacterium tuberculosis '98-R604
           INH-RIF-EM']
 gi|260185077|ref|ZP_05762551.1| putative methyltransferase [Mycobacterium tuberculosis CPHL_A]
 gi|260203358|ref|ZP_05770849.1| putative methyltransferase [Mycobacterium tuberculosis K85]
 gi|289445745|ref|ZP_06435489.1| methyltransferase/methylase [Mycobacterium tuberculosis CPHL_A]
 gi|289552465|ref|ZP_06441675.1| methyltransferase/methylase [Mycobacterium tuberculosis KZN 605]
 gi|289572793|ref|ZP_06453020.1| methyltransferase/methylase [Mycobacterium tuberculosis K85]
 gi|289747980|ref|ZP_06507358.1| methyltransferase [Mycobacterium tuberculosis 02_1987]
 gi|289760317|ref|ZP_06519695.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|289764329|ref|ZP_06523707.1| methyltransferase (methylase) [Mycobacterium tuberculosis GM 1503]
 gi|294994687|ref|ZP_06800378.1| putative methyltransferase [Mycobacterium tuberculosis 210]
 gi|297632693|ref|ZP_06950473.1| putative methyltransferase [Mycobacterium tuberculosis KZN 4207]
 gi|297729667|ref|ZP_06958785.1| putative methyltransferase [Mycobacterium tuberculosis KZN R506]
 gi|298527605|ref|ZP_07015014.1| methyltransferase (methylase) [Mycobacterium tuberculosis
           94_M4241A]
 gi|313656993|ref|ZP_07813873.1| putative methyltransferase [Mycobacterium tuberculosis KZN V2475]
 gi|1871586|emb|CAB07008.1| POSSIBLE METHYLTRANSFERASE (METHYLASE) [Mycobacterium tuberculosis
           H37Rv]
 gi|13879708|gb|AAK44444.1| methyltransferase, putative [Mycobacterium tuberculosis CDC1551]
 gi|31616976|emb|CAD93083.1| POSSIBLE METHYLTRANSFERASE (METHYLASE) [Mycobacterium bovis
           AF2122/97]
 gi|121491772|emb|CAL70234.1| Possible methyltransferase (methylase) [Mycobacterium bovis BCG
           str. Pasteur 1173P2]
 gi|124603391|gb|EAY61666.1| hypothetical protein TBCG_00211 [Mycobacterium tuberculosis C]
 gi|148504129|gb|ABQ71938.1| putative methyltransferase [Mycobacterium tuberculosis H37Ra]
 gi|148719933|gb|ABR04558.1| hypothetical methyltransferase [Mycobacterium tuberculosis F11]
 gi|224771711|dbj|BAH24517.1| putative methyltransferase [Mycobacterium bovis BCG str. Tokyo 172]
 gi|289418703|gb|EFD15904.1| methyltransferase/methylase [Mycobacterium tuberculosis CPHL_A]
 gi|289437097|gb|EFD19590.1| methyltransferase/methylase [Mycobacterium tuberculosis KZN 605]
 gi|289537224|gb|EFD41802.1| methyltransferase/methylase [Mycobacterium tuberculosis K85]
 gi|289688508|gb|EFD55996.1| methyltransferase [Mycobacterium tuberculosis 02_1987]
 gi|289711835|gb|EFD75851.1| methyltransferase (methylase) [Mycobacterium tuberculosis GM 1503]
 gi|289715881|gb|EFD79893.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|298497399|gb|EFI32693.1| methyltransferase (methylase) [Mycobacterium tuberculosis
           94_M4241A]
 gi|328456922|gb|AEB02345.1| methyltransferase/methylase [Mycobacterium tuberculosis KZN 4207]
          Length = 437

 Score = 64.6 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 60/323 (18%), Positives = 116/323 (35%), Gaps = 35/323 (10%)

Query: 79  KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVN-VVVGPQTY---- 133
                   +  L     +    + +V+   +A    E ILR+    + VVVG        
Sbjct: 50  SCIDTFPEVLWLAQRARQAWDGVRIVIGNAMATLNYERILRQHDCFDYVVVGDGEVAFTK 109

Query: 134 -----------YRLPELLERARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLT 181
                        +P L  R+  G+ +      V+ D+  R +  +       G  A + 
Sbjct: 110 LALALANDAAVDDVPGLARRSEQGQILRTPSSLVDLDELPRPARDELPTVLADGFAASVF 169

Query: 182 IQEGCDKFCTFC---VVPYTRGI--EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR 236
              GC   CTFC    +    G     ++S+  VVDE   L+ +       +  ++   +
Sbjct: 170 STRGCPYRCTFCGTGAMSAMLGKDSYRAKSVDAVVDEIDYLVSDYDVNFLSITDDLFISK 229

Query: 237 GKGLDGEKCTFSD-LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPV 295
             G       F++ +L     +  +V +R  +    D+   L +A       +  + + V
Sbjct: 230 HPGSQQRAADFANAVLRRGISVNFMVDIRLDSVVDLDLFKHLHRA------GLRRVFIGV 283

Query: 296 QSGSDRILKSMNRR--HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
           ++GS   L++  ++      +    I+ ++ +  D+   +  I+  P    D+ R T+ L
Sbjct: 284 ETGSYEQLRAYRKQILTRGQDAADTINALQQLGIDVIPGT--IMFHPTVQPDELRETVRL 341

Query: 354 VDKIGYAQAFSFKYS--PRLGTP 374
           +    Y   F F     P  GTP
Sbjct: 342 LRATKYTVGFKFMSRIVPYPGTP 364


>gi|13474043|ref|NP_105611.1| Mg-protoporphyrin IX monomethyl ester oxidative cyclase 66kD
           subunit [Mesorhizobium loti MAFF303099]
 gi|14024795|dbj|BAB51397.1| Mg-protoporphyrin IX monomethyl ester oxidative cyclase 66kD
           subunit [Mesorhizobium loti MAFF303099]
          Length = 511

 Score = 64.6 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 33/213 (15%), Positives = 69/213 (32%), Gaps = 12/213 (5%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARK-LIDNGVCEITLLGQNVNAWRGK 238
           +    GC   C +C           R   +   E      ++GV  I L  +N       
Sbjct: 197 MQFSRGCPHLCNYCGQRGFWTRWRHRDPKKFAQEIAWLHREHGVELINLADENPTVS--- 253

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
               +K   + L   ++E   ++ +  T +        ++  +    V+     L +++ 
Sbjct: 254 ----KKAWRAFLDALIAENVPVLIVGSTRADDIVRDADILHLYRKAGVIR--WLLGMENT 307

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
            ++ L+ + +  +    R+ I  +R     I   + ++ GF  E   D       +    
Sbjct: 308 DEQTLQLIRKGGSTSSDREAIRLLRK--HGILSMATWVAGFEDEGFRDLWRGFRQLIAYD 365

Query: 359 YAQAFSFKYSPRLGTPGSNMLEQVDENVKAERL 391
             Q  +   +P   TP   +        K  RL
Sbjct: 366 PDQIQALYVTPHRWTPFFRIARDRKVIQKDARL 398


>gi|167968789|ref|ZP_02551066.1| hypothetical methyltransferase [Mycobacterium tuberculosis H37Ra]
 gi|253797135|ref|YP_003030136.1| methyltransferase/methylase [Mycobacterium tuberculosis KZN 1435]
 gi|254366662|ref|ZP_04982706.1| hypothetical methyltransferase (methylase) [Mycobacterium
           tuberculosis str. Haarlem]
 gi|308394871|ref|ZP_07491803.2| methyltransferase/methylase [Mycobacterium tuberculosis SUMu012]
 gi|134152174|gb|EBA44219.1| hypothetical methyltransferase (methylase) [Mycobacterium
           tuberculosis str. Haarlem]
 gi|253318638|gb|ACT23241.1| methyltransferase/methylase [Mycobacterium tuberculosis KZN 1435]
 gi|308367561|gb|EFP56412.1| methyltransferase/methylase [Mycobacterium tuberculosis SUMu012]
 gi|323717202|gb|EGB26411.1| methyltransferase/methylase [Mycobacterium tuberculosis CDC1551A]
          Length = 443

 Score = 64.6 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 60/323 (18%), Positives = 116/323 (35%), Gaps = 35/323 (10%)

Query: 79  KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVN-VVVGPQTY---- 133
                   +  L     +    + +V+   +A    E ILR+    + VVVG        
Sbjct: 56  SCIDTFPEVLWLAQRARQAWDGVRIVIGNAMATLNYERILRQHDCFDYVVVGDGEVAFTK 115

Query: 134 -----------YRLPELLERARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLT 181
                        +P L  R+  G+ +      V+ D+  R +  +       G  A + 
Sbjct: 116 LALALANDAAVDDVPGLARRSEQGQILRTPSSLVDLDELPRPARDELPTVLADGFAASVF 175

Query: 182 IQEGCDKFCTFC---VVPYTRGI--EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR 236
              GC   CTFC    +    G     ++S+  VVDE   L+ +       +  ++   +
Sbjct: 176 STRGCPYRCTFCGTGAMSAMLGKDSYRAKSVDAVVDEIDYLVSDYDVNFLSITDDLFISK 235

Query: 237 GKGLDGEKCTFSD-LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPV 295
             G       F++ +L     +  +V +R  +    D+   L +A       +  + + V
Sbjct: 236 HPGSQQRAADFANAVLRRGISVNFMVDIRLDSVVDLDLFKHLHRA------GLRRVFIGV 289

Query: 296 QSGSDRILKSMNRR--HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
           ++GS   L++  ++      +    I+ ++ +  D+   +  I+  P    D+ R T+ L
Sbjct: 290 ETGSYEQLRAYRKQILTRGQDAADTINALQQLGIDVIPGT--IMFHPTVQPDELRETVRL 347

Query: 354 VDKIGYAQAFSFKYS--PRLGTP 374
           +    Y   F F     P  GTP
Sbjct: 348 LRATKYTVGFKFMSRIVPYPGTP 370


>gi|118578793|ref|YP_900043.1| radical SAM domain-containing protein [Pelobacter propionicus DSM
           2379]
 gi|118501503|gb|ABK97985.1| Radical SAM domain protein [Pelobacter propionicus DSM 2379]
          Length = 826

 Score = 64.6 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 42/244 (17%), Positives = 86/244 (35%), Gaps = 33/244 (13%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGK 238
           + I  GC + C FC   Y       RS   +++  +K +   G  E++LL  +       
Sbjct: 252 VEIARGCTRGCRFCQAGYIYRPLRERSPETIIELVKKTLAATGYDEVSLLSLSS------ 305

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD--MSDCLIKAHGDLDVLMPYLHLPVQ 296
              G+    S L+  L +     R+  +    R   ++D LI     +        L  +
Sbjct: 306 ---GDYSCVSPLITHLMKRYAQERIALSLPSLRVGTLTDDLISEIKKVRK--TGFTLAPE 360

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
           +GS+R+ + +N+  +  +  +    +       +I   F++G PGET +D      L  +
Sbjct: 361 AGSERLRRVINKGISEQDLLETAFNVYQAGWR-SIKLYFMIGLPGETSEDVEQISILARR 419

Query: 357 I----------GYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFN 406
           +          G        + P+  TP      Q+           +++   +  +   
Sbjct: 420 VKDQAKQAATSGEVNVSVSSFVPKAHTP-FQWEPQISME-------NIRELQYQLHLDLK 471

Query: 407 DACV 410
              +
Sbjct: 472 KRKL 475


>gi|192289176|ref|YP_001989781.1| radical SAM domain protein [Rhodopseudomonas palustris TIE-1]
 gi|192282925|gb|ACE99305.1| Radical SAM domain protein [Rhodopseudomonas palustris TIE-1]
          Length = 677

 Score = 64.6 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 60/345 (17%), Positives = 108/345 (31%), Gaps = 49/345 (14%)

Query: 72  IREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ 131
            R      +      +        +  GD+++ +  C    + +E   R+  V       
Sbjct: 224 FRRVPENTIELHADDLDAADEGARQVRGDVVIRLPSCEQVEQDKEAYARASRVLHRESNP 283

Query: 132 TYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT-------------A 178
              R   L++R       ++         E  S+ D  Y R    +              
Sbjct: 284 GNARP--LVQRHGDRDLWLNPPPIPLTTEEMDSVYDLPYARAPHPSYGNAKIPAWDMIKT 341

Query: 179 FLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDNGVCEITLL----GQNVN 233
            +TI  GC   CTFC +    G  I SRS + ++ E  K+ D       ++    G   N
Sbjct: 342 SVTIMRGCFGGCTFCSITEHEGRIIQSRSEASILQEIEKIRDKTPGFTGVISDIGGPTAN 401

Query: 234 AWRGKGLDGE----------------------KCTFSDLLYSLSEIKGLVRLRYTTSHPR 271
            +R    D                              L   + E+KG+ R+   +    
Sbjct: 402 MYRMACKDPNIESSCRKPSCVFPDICPNLNTSHDDLIRLYRKVREVKGIKRVMVASGVRY 461

Query: 272 DMSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRR--HTAYEYRQIID-RIRSVR 326
           D++        +L    +  YL +  +      L  M +    T + ++Q+ +   +   
Sbjct: 462 DLAVKSPAYIKELVSHHVGGYLKIAPEHTERGPLDKMMKPGIGTYHRFKQMFEAAAKQAG 521

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGY--AQAFSFKYSP 369
               +   FI   PG TD+D       + +  Y   Q  +F  SP
Sbjct: 522 KQYYLIPYFIAAHPGTTDEDMMNLALWLKRNRYRADQVQTFLPSP 566


>gi|332799108|ref|YP_004460607.1| Radical SAM domain-containing protein [Tepidanaerobacter sp. Re1]
 gi|332696843|gb|AEE91300.1| Radical SAM domain protein [Tepidanaerobacter sp. Re1]
          Length = 573

 Score = 64.6 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 57/342 (16%), Positives = 117/342 (34%), Gaps = 44/342 (12%)

Query: 71  HIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGP 130
            +  +  E ++  +G+ + LKN   +E  + L  + G    +  +    R   V  +   
Sbjct: 151 FVVGEGEEVIHEIMGKYKELKNREKQEILEALAQIEGVYVPSFYDIEYDREGNVQNITTT 210

Query: 131 QTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190
                    L   +  KR V      + +   L+      +        + I  GC + C
Sbjct: 211 S--------LAPRQIKKRWVRDINKYDTESVILTPYTEFKDMF-----LIEISRGCGRNC 257

Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDL 250
            FC+  Y   +   RS+ ++++ +   +                    GL G   +    
Sbjct: 258 RFCMAGYCYRVPRYRSMDKILERSEFGLKYKGKI--------------GLVGAAVSDYPF 303

Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
           +  L+E      ++++ S  R  +       G        L +  ++GS+R+ K +N+  
Sbjct: 304 IDELAEKFVENGIKFSVSSLRADTLREPLMMGLAYSGHKTLTVAPEAGSNRLRKIINKGI 363

Query: 311 TAYEYRQIIDRIRSV-RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA------- 362
           T       +         ++ +   +I+G PGET+DD    +D +  +            
Sbjct: 364 TDEHVINAVKLAYQYSIENVKLY--YIIGLPGETEDDIDEMIDFLTFLK-DYMKALGNKR 420

Query: 363 -----FSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLR 399
                    + P+  TP    L      V  ER+  +Q +L+
Sbjct: 421 GNLTISINPFIPKPFTP-FQWLGMESVGVLNERIKLIQNRLK 461


>gi|295401086|ref|ZP_06811060.1| Coproporphyrinogen dehydrogenase [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|294976879|gb|EFG52483.1| Coproporphyrinogen dehydrogenase [Geobacillus thermoglucosidasius
           C56-YS93]
          Length = 501

 Score = 64.6 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 66/385 (17%), Positives = 131/385 (34%), Gaps = 52/385 (13%)

Query: 23  VPQRFFVKSYGCQMNVYDS-------LRMEDMFFSQGYERVNSM-DDADLIVLNT----- 69
           +P R  ++        +D+         +  +FF + YE V    D AD+ V  +     
Sbjct: 1   MPLRIHIEGL------HDTGRFQRPLEVITGLFFEK-YELVLEPGDGADITVAFSISGDK 53

Query: 70  -CHIREKAAEKVYSFLGRIRNLK--------NSRIKEGGDLLVVVAGCVAQAEGEEILRR 120
             H+R   +EK         + K          R K+    ++ V   + Q     I + 
Sbjct: 54  RVHVRGILSEKSTENKYEANHEKDVSGSFTEKERFKQVKYAVLSVYVTLLQQYTGLIQQW 113

Query: 121 SPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFE--------RLSIVDGGYNR 172
             +  +      +  L   L +    +++ +     ++K E        +L++V   Y+ 
Sbjct: 114 GVLTGIRPVKLLHKMLRSGLSQEEAHRQLREEYLVTDEKIELMQEIVDRQLAVVPDLYDL 173

Query: 173 KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNV 232
              V+ ++ I   C   C +C  P         S+   +      +      +   G N+
Sbjct: 174 AHEVSIYIGIPF-CPTKCAYCTFPAYAINGRQGSVDAFLAGLHYEMREIGRFLKERGINI 232

Query: 233 NAWRGKGLDGEKCTFS-DLLYSLSEI-----KGLVRLRYTTSH---PRDMSDCLIKAHGD 283
                 G  G   + S + +  L  +       + R+R  T     P  ++   +     
Sbjct: 233 TTIYYGG--GTPTSISAEEMDQLYAVMYEAFPNIERVREITVEAGRPDTITPEKLNVLKK 290

Query: 284 LDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGET 343
            ++    + +  QS     LK++ R HT  E  +     R +  +  I+ D I+G PGE 
Sbjct: 291 WNI--GRISINPQSYIQETLKAIGRHHTVDETIEKFHLAREMGMN-NINMDVIIGLPGEG 347

Query: 344 DDDFRATMDLVDKIGYAQAFSFKYS 368
             +F  T+   +K+          S
Sbjct: 348 IKEFSHTLAQTEKLMPESLTVHTLS 372


>gi|295675334|ref|YP_003603858.1| lipoic acid synthetase [Burkholderia sp. CCGE1002]
 gi|295435177|gb|ADG14347.1| lipoic acid synthetase [Burkholderia sp. CCGE1002]
          Length = 335

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 80/220 (36%), Gaps = 10/220 (4%)

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
           + +  ++++    E  S  + G    +G   F+ + + C + C FC V + R   +    
Sbjct: 70  KQILREHNLHTVCEEASCPNIGECFGKGTATFMIMGDKCTRRCPFCDVGHGRPDPL--DA 127

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
            +  + AR +    +  + +   +    R    DG    F + +    E+    R+   T
Sbjct: 128 DEPANLARTIAALKLKYVVITSVD----RDDLRDGGAAHFVECIRQTRELSPQTRIEILT 183

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
               D    L +A G L+   P +         R+ K            +++   +++ P
Sbjct: 184 P---DFRGRLDRALGILNAAPPDVMNHNLETVPRLYKEARPGSDYAHSLKLLKDFKALHP 240

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
            +A  S  +VG  GET+++    M  +           +Y
Sbjct: 241 HVATKSGLMVGL-GETEEEILQVMRDLRDHDVDMLTIGQY 279


>gi|302346623|ref|YP_003814921.1| uncharacterized radical SAM protein YgiQ [Prevotella melaninogenica
           ATCC 25845]
 gi|302150474|gb|ADK96735.1| uncharacterized radical SAM protein YgiQ [Prevotella melaninogenica
           ATCC 25845]
          Length = 709

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 49/311 (15%), Positives = 95/311 (30%), Gaps = 64/311 (20%)

Query: 126 VVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT-------- 177
            +           +L+       VV+  Y      E  +  D  Y R+            
Sbjct: 280 HIEEESNKKHAQRILQAVDNVYAVVNPPYPTMTTEEVDAAYDLPYTREPHPKYRGKTIPA 339

Query: 178 -----AFLTIQEGCDKFCTFCVVPYTRGIEIS-RSLSQVVDEARKLIDN----------G 221
                  + I  GC   C+FC +   +G  IS RS   ++ E +++I            G
Sbjct: 340 YEMIKHSVNIHRGCFGGCSFCTISAHQGKFISCRSKESILKEVKQVIQMPDFKGYLSDLG 399

Query: 222 VCEITLLGQ---------------NVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
                + G                 VN      L+ +     ++ +++ E+ G+ +    
Sbjct: 400 GPSANMYGMAGKNQKACEHCKRPSCVNPEICPNLETDHTKLLEIYHAVDELPGIKKSFIG 459

Query: 267 TSHPRDMSDCLIKAHGDLD---------------VLMPYLHLPVQSGSDRILKSMNRR-- 309
           +    D+   L+    D                  +   L +  +  SDR+L  M +   
Sbjct: 460 SGVRYDL---LLHKSKDEKSNEAARQYTRELITRHVSGRLKVAPEHTSDRVLNLMRKPSF 516

Query: 310 ---HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
              +   +    I+R  ++R  I     FI   PG  ++D      L   + +       
Sbjct: 517 QQFYAFKKIFDRINREENMRQQIIPY--FISSHPGCQEEDMAELAVLTKDLDFHLEQVQD 574

Query: 367 YSPRLGTPGSN 377
           ++P   T  + 
Sbjct: 575 FTPTPMTVSTE 585


>gi|330446317|ref|ZP_08309969.1| radical SAM superfamily protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328490508|dbj|GAA04466.1| radical SAM superfamily protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 778

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 55/318 (17%), Positives = 104/318 (32%), Gaps = 38/318 (11%)

Query: 131 QTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGY---NRKRGVTAFLTIQEGCD 187
           Q +      + RA       + D+     F R+     G         +   + I  GC 
Sbjct: 320 QKHADRELWVNRAPIPLTTEEMDFVFGLPFARIPHPSYGKAKIPAYDMIKTSVNIMRGCF 379

Query: 188 KFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDN--GVCEIT--LLGQNVNAWR------ 236
             C+FC +    G  I +RS   +++E  ++ +   G       L G   N +R      
Sbjct: 380 GGCSFCSITEHEGRIIQNRSKESILNEIEEIREKVPGFTGTISDLGGPTANMYRLGCSDE 439

Query: 237 ----------------GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKA 280
                            + L+ +     DL      +KG+ ++   +    D++    + 
Sbjct: 440 RAEANCRRPSCIFPKICEKLNTDHKHTIDLYREARNLKGVKKIMIASGVRYDLAVESPEY 499

Query: 281 HGDL--DVLMPYLHLPVQSGSDRILKSMNRRH--TAYEYRQIIDRI-RSVRPDIAISSDF 335
             +L    +  YL +  +      L  M +    T   ++++ D+  +       +   F
Sbjct: 500 VRELVTHHVGGYLKIAPEHTEKGTLDLMMKPGMGTFDRFKEMFDKYSKEAGKKQYLIPYF 559

Query: 336 IVGFPGETDDDFRATMDLVDKIGY--AQAFSFKYSPRLGTPGSNMLEQVD-ENVKAERLL 392
           I   PG TD+D       + +  Y   Q  +F  SP          E    + VK +   
Sbjct: 560 ISAHPGSTDEDMLNLALWLKQNDYQCDQVQNFYPSPMCNATAMYHSETNPLKKVKYKGRD 619

Query: 393 CLQKKLREQQVSFNDACV 410
            L     E+Q   + A +
Sbjct: 620 DLFVAKGERQRRLHKALL 637


>gi|262038001|ref|ZP_06011413.1| radical SAM family Fe-S protein [Leptotrichia goodfellowii F0264]
 gi|261747954|gb|EEY35381.1| radical SAM family Fe-S protein [Leptotrichia goodfellowii F0264]
          Length = 454

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 61/341 (17%), Positives = 117/341 (34%), Gaps = 41/341 (12%)

Query: 48  FFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAG 107
              Q  E +N  D  DL+V+                    R+ K +         VV+ G
Sbjct: 46  LQDQHIEELNLDDSPDLVVI------------QVYITNAYRSYKLADYYRKKGAYVVLGG 93

Query: 108 CVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVD 167
               +  EE +  +    +++GP      P+ LE  R  K+      SV    E + +V 
Sbjct: 94  LHVTSLPEEAIEHAD--TIMLGPGE-DIFPKFLEDLR-NKKPQKMYISVHRSLENIPVVR 149

Query: 168 GGYNRKRGVTAF--LTIQEGCDKFCTFCVVPYTRGIEIS---RSLSQVVDEARKLIDNGV 222
               ++        + +  GC   C FC          S   R +   + E   L     
Sbjct: 150 RDLIKRERYLVPNSIVVTRGCPHHCDFCYKDAFYQNGKSFYTRLVDDALKEIESLPG--- 206

Query: 223 CEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM-SDCLIKAH 281
             +  L  ++         G      +L   +   KG+ R+    +    + +   I+  
Sbjct: 207 RHLYFLDDHLL--------GNPKFAKELFEGM---KGMNRVFQGAATIDSILTGDTIEKA 255

Query: 282 GDLDVLMPYLHLPVQSGSDRILKSMNRRHT-AYEYRQIIDRIRSVRPDIAISSDFIVGFP 340
            +    +  + +  ++ S   LK  N+      +Y ++++R+ S+   I I+  F+ G  
Sbjct: 256 AEAG--LRSIFVGFETFSPENLKQSNKSQNLQRDYIKVVNRLHSL--GIMINGSFVFGLD 311

Query: 341 GETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
            +  D F+ T+D   K     +     +P  GT     +E+
Sbjct: 312 NDDKDVFKRTVDWGVKNAITTSTYHILTPYPGTRLFKRMEE 352


>gi|260592159|ref|ZP_05857617.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Prevotella veroralis F0319]
 gi|260535793|gb|EEX18410.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Prevotella veroralis F0319]
          Length = 400

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 42/214 (19%), Positives = 84/214 (39%), Gaps = 30/214 (14%)

Query: 186 CDKFCTFC----VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD 241
           C   C +C     +P        R     +    + ++    E+ L    ++        
Sbjct: 11  CASRCIYCGFYSTIPT-------RQKDNGLTIEEQYVNALCNEMQLRANELDEPIRSIYL 63

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTT--------------SHPRDMSDCLIKAHGDLDVL 287
           G          SL +I   ++  +                 +P D++D  ++    L + 
Sbjct: 64  GGGTPSQLTYKSLQQIFSTIKKAFHITWNKNNSPLEITMECNPDDVTDTFVRDLQKLPI- 122

Query: 288 MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV-RPDIAISSDFIVGFPGETDDD 346
              + + VQ+ SD  L+ ++RRHTA E    I R+R +   +I+I  D + GFP ET ++
Sbjct: 123 -NRISMGVQTFSDERLRFLHRRHTADEVELAIKRLRKIGIHNISI--DLMFGFPNETMNE 179

Query: 347 FRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           +++ +D   ++      ++      GTP   +L+
Sbjct: 180 WKSDIDRAIQLNVEHLSAYSLMYEEGTPLYQLLK 213


>gi|153823309|ref|ZP_01975976.1| conserved hypothetical protein [Vibrio cholerae B33]
 gi|126519173|gb|EAZ76396.1| conserved hypothetical protein [Vibrio cholerae B33]
          Length = 77

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 22/42 (52%)

Query: 427 KLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           +L GR+   + V        IG  + V+I DV  ++L GEL+
Sbjct: 2   ELRGRTENNRVVNFEGSPDLIGQFVDVKIVDVFPNSLRGELL 43


>gi|224535950|ref|ZP_03676489.1| hypothetical protein BACCELL_00814 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224522438|gb|EEF91543.1| hypothetical protein BACCELL_00814 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 337

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 34/148 (22%), Positives = 61/148 (41%), Gaps = 12/148 (8%)

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPR--DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
            F ++  ++ ++ G+      T      D+++  I     L      + + +Q+  D  L
Sbjct: 30  DFKEVFKTIEQVYGMREATEITLEANPDDLTEEYIGMLHTLP--FNRISMGIQTFDDATL 87

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDI-AISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           + +NRRH A +  + + R R        IS D I G PGET+  +   +     +     
Sbjct: 88  QLLNRRHNATQAIEAVKRCRQA--GFQNISIDLIYGLPGETEQRWAQDLQQAVSLDVEHI 145

Query: 363 FSFKYSPRLGTPGSNMLE-----QVDEN 385
            ++      GTP   ML+     QVDE+
Sbjct: 146 SAYHLIYEEGTPLYKMLQQHSVSQVDED 173


>gi|262370214|ref|ZP_06063541.1| Fe-S oxidoreductase [Acinetobacter johnsonii SH046]
 gi|262315253|gb|EEY96293.1| Fe-S oxidoreductase [Acinetobacter johnsonii SH046]
          Length = 795

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 60/317 (18%), Positives = 101/317 (31%), Gaps = 50/317 (15%)

Query: 131 QTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRG---VTAFLTIQEGCD 187
           Q +      L          + DY  +  + RL     G  R      +   + I  GC 
Sbjct: 359 QKHGERDVWLNAPPIPLTTEEMDYVFDLPYARLPHPVYGEARFPAFDMIKFSVNIMRGCF 418

Query: 188 KFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDNGVCEITLLGQ------NVNAWRGKGL 240
             CTFC +    G  I +RS   ++ E  K+ D       ++        N+     K  
Sbjct: 419 GGCTFCSITEHEGRIIQNRSEESILREVEKIRDTAPGFTGIISDLGGPTANMYRLHCKDP 478

Query: 241 DGEK--------------------CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKA 280
           + EK                       + L     E+KG+ ++   +    D++    + 
Sbjct: 479 EIEKNCRKPSCVYPGVCQNLHTDHAPLTQLYRKARELKGIKKILIGSGLRYDLAVLNPEY 538

Query: 281 HGDL--DVLMPYLHLPVQSGSDRILKSMNRR--HTAYEYRQIIDRI-RSVRPDIAISSDF 335
             +L    +  YL +  +      L  M +    T   ++Q+ DR  +    +  +   F
Sbjct: 539 VKELVQHHVGGYLKIAPEHTEKGPLSKMMKPGIGTYDRFKQMFDRFSKEAGKEQYLIPYF 598

Query: 336 IVGFPGETDDDFRATMDLVDKIGY--AQAFSFKYSPR------------LGTPGSNMLEQ 381
           I   PG T+ D       + K G+   Q  +F  SP                  +   E 
Sbjct: 599 IAAHPGTTEYDMMNLAIWLKKNGFRADQVQTFYPSPMATATTMYHTGKNPLAKVARYTED 658

Query: 382 VDENVKAERLLCLQKKL 398
           VD  VK E+   L K  
Sbjct: 659 VDI-VKGEKRRRLHKAF 674


>gi|218261857|ref|ZP_03476546.1| hypothetical protein PRABACTJOHN_02217 [Parabacteroides johnsonii
           DSM 18315]
 gi|218223734|gb|EEC96384.1| hypothetical protein PRABACTJOHN_02217 [Parabacteroides johnsonii
           DSM 18315]
          Length = 605

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 53/313 (16%), Positives = 101/313 (32%), Gaps = 64/313 (20%)

Query: 126 VVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTA------- 178
            +       +   +L++      VV+  +    + E  +  D  Y R             
Sbjct: 239 HIEEESNKQQASRILQKVGRQTIVVNPPFPPMTEEEIDASFDLPYTRLPHPKYKGKTIPA 298

Query: 179 ------FLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEAR---KLIDNGVCEITLL 228
                  + I  GC   C FC +   +G  I SRS   ++ E +   ++ D       L 
Sbjct: 299 FEMIKFSVNIHRGCFGGCAFCTISAHQGKFIASRSKESILKEVKEITRMPDFKGYLSDLG 358

Query: 229 GQNVNAWRGKGLDGEKCT----------------------FSDLLYSLSEIKGLVRLRYT 266
           G + N +R KG + + C+                        D+   +  +  + R    
Sbjct: 359 GPSANMYRMKGKNPDICSQCKKPSCISPVVCKNLNADHTPLLDIYKEVDRMPEIKRSFIG 418

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLH----------------LPVQSGSDRILKSMNRRH 310
           +    D+   L+  + D D L    H                +  +   D +LK M +  
Sbjct: 419 SGVRYDL---LLHRYTD-DNLNKAAHTYMEELIARHVSGRLKVAPEHTEDNVLKMMRKP- 473

Query: 311 TAY---EYRQIIDRI-RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
           +     ++++I DRI +    +  +   FI   PG T+ D         K+ +       
Sbjct: 474 SFELFGQFKKIFDRINKQYGLNQQLIPYFISSHPGCTEADMANLAIQTKKLHFQLEQVQD 533

Query: 367 YSPRLGTPGSNML 379
           ++P   T  + M 
Sbjct: 534 FTPTPMTLATEMY 546


>gi|294659919|ref|XP_002770663.1| DEHA2G18854p [Debaryomyces hansenii CBS767]
 gi|306755827|sp|B5RUV1|LIPA_DEBHA RecName: Full=Lipoyl synthase, mitochondrial; AltName: Full=Lipoate
           synthase; Short=LS; Short=Lip-syn; AltName: Full=Lipoic
           acid synthase; Flags: Precursor
 gi|199434335|emb|CAR65995.1| DEHA2G18854p [Debaryomyces hansenii]
          Length = 395

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 46/243 (18%), Positives = 94/243 (38%), Gaps = 14/243 (5%)

Query: 156 VEDKFERLSIVDGGYNRKRGVTAFLTIQ-EGCDKFCTFCVVPYTRGIEISRSLSQVVDEA 214
           V ++ +  +I +    +K   TA + +  + C + C FC V  +R       +    + A
Sbjct: 111 VCEEAKCPNIGECWGGKKSEATATIMLMGDTCTRGCRFCSVKTSRAPAKPDPME-PENTA 169

Query: 215 RKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPR-DM 273
             +   G+  + L   +    R   +DG     ++ +  + E    + +       R D+
Sbjct: 170 EAISRWGLGYVVLTTVD----RDDLVDGGANHLAETVRKIKEKAPQILVEVLGGDFRGDL 225

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
               I A   LDV    +   V++ +  +     RR T  +   I+++ +  +P +   +
Sbjct: 226 DMAAILARSGLDVYAHNIET-VEALTPYVRD---RRATYRQSLSILNKAKETKPSLVTKT 281

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV-DENVKAERLL 392
             ++GF GETD+    T+  + +I        +Y  R       +++ V  E     R  
Sbjct: 282 SLMLGF-GETDEQIMQTLKDLREIKCDVVTFGQYM-RPTKRHMKVVDYVKPEKFDYWRDT 339

Query: 393 CLQ 395
            LQ
Sbjct: 340 ALQ 342


>gi|257468860|ref|ZP_05632954.1| oxygen-independent coproporphyrinogen III oxidase [Fusobacterium
           ulcerans ATCC 49185]
 gi|317063110|ref|ZP_07927595.1| oxygen-independent coproporphyrinogen III oxidase [Fusobacterium
           ulcerans ATCC 49185]
 gi|313688786|gb|EFS25621.1| oxygen-independent coproporphyrinogen III oxidase [Fusobacterium
           ulcerans ATCC 49185]
          Length = 346

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 77/224 (34%), Gaps = 18/224 (8%)

Query: 185 GCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLID----NGVCEITLLGQNVNAWRGKGL 240
           GC   C FC      G E   ++  + +     ++    N   E+   G       G   
Sbjct: 14  GCPNACVFCNQKKINGRETDVTMEDLKETIETYLETLPKNSKKEVAFFGGTFT---GISF 70

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300
           D ++     +   + +  GLV     ++ P  ++  +++        +  + L VQS  +
Sbjct: 71  DLQRQYLETVHEYIKK--GLVDGIRLSTRPDCINKEIVEQLKKYG--VTSVELGVQSLDE 126

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
           ++LK+  R + A    +    ++    +I +    ++G P  T +    T +   K+   
Sbjct: 127 KVLKATARYYPAEVVAEACSLLKEY--NIELGIQLMIGLPESTFESDFFTAEKALKMNPD 184

Query: 361 QAFSFKYSPRLGTPGSNMLEQ-----VDENVKAERLLCLQKKLR 399
            A  +      GT    M +      +      ER   +   L 
Sbjct: 185 TARIYPTLVIKGTKMEEMFKDGEYKALSIEEAVERTRKIYSLLE 228


>gi|328545338|ref|YP_004305447.1| Hypothetical methyltransferase [polymorphum gilvum SL003B-26A1]
 gi|326415080|gb|ADZ72143.1| Hypothetical methyltransferase [Polymorphum gilvum SL003B-26A1]
          Length = 544

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 58/350 (16%), Positives = 110/350 (31%), Gaps = 53/350 (15%)

Query: 103 VVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR--VVDTDYSVEDKF 160
           VVV G  A +  +         +  V  +    L   +E  R G+R      +    D  
Sbjct: 109 VVVGGPDATSSPD----IYAEADFRVLGEAEGILDRFVEAWRNGERSGTFTAEKFKADVT 164

Query: 161 ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLID 219
                     N K  V   +    GC   C FC +    G +  +++  Q++ E  +L +
Sbjct: 165 TSPVPRFDLLNFKHYVQIGVQFSRGCPFTCEFCDIIELYGRKPRTKTNDQMLAELSRLHE 224

Query: 220 NGVC-EITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPR----DMS 274
            G    +  +  N+         G K      L  L+  +      +  S          
Sbjct: 225 LGYRGHVDFVDDNLI--------GNKKAVKAFLPDLARWQKERNRPFEMSTEASLNLADD 276

Query: 275 DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR-HTAYEYRQIIDRIRSVRPDIAISS 333
           D L+    D       + + ++S    +L +  ++ +T  +  + + RI      I + +
Sbjct: 277 DELLAQMQDAGFF--SVFIGIESPDPDVLVATRKKQNTRRDIAKSVHRIYDA--GIWVLA 332

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN---------------- 377
            FIVGF  E+D        L+++     +          T  +                 
Sbjct: 333 GFIVGFDEESDKVADEISALIEEAAIPVSMVGLLYALPNTQLTRRLAREGRLHADFDVSD 392

Query: 378 -----MLEQ----VDENVKAERLLCLQKKLREQQVSFN--DACVGQIIEV 416
                M +Q    ++   + ER   L    R         +A  G++ +V
Sbjct: 393 ASQDQMGDQCTSGLNFETRRERARILSD-YRSIVERIYAPEAYFGRVRKV 441


>gi|332529007|ref|ZP_08404973.1| lipoyl synthase [Hylemonella gracilis ATCC 19624]
 gi|332041557|gb|EGI77917.1| lipoyl synthase [Hylemonella gracilis ATCC 19624]
          Length = 328

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 79/221 (35%), Gaps = 12/221 (5%)

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
           + +  ++ +    E  S  + G    +G   F+ + + C + C FC V + R   +   +
Sbjct: 62  KDILREHKLHTVCEEASCPNIGECFGKGTATFMIMGDKCTRRCPFCDVGHGRPDPL--DV 119

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
            + ++ A+ +    +  + +   +    R    DG    F + +    E+  L ++    
Sbjct: 120 DEPLNLAKTIAALKLKYVVITSVD----RDDLRDGGAGHFGECIRKTRELSPLTQIEVLV 175

Query: 268 SHPRDMSDCLIKAH-GDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
              R   D  ++        +M +    V     R+ K             ++ + +++ 
Sbjct: 176 PDFRGRDDRALEILKAAPPDVMNHNLETV----PRLYKQARPGSDYQFSLNLLKKFKALH 231

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           P +   S  +VG  GETD++    M  +           +Y
Sbjct: 232 PKVPTKSGIMVGL-GETDEEILEVMRDMRAHDIDMLTIGQY 271


>gi|228951365|ref|ZP_04113474.1| Oxygen-independent coproporphyrinogen III oxidase 2 [Bacillus
           thuringiensis serovar kurstaki str. T03a001]
 gi|228808302|gb|EEM54812.1| Oxygen-independent coproporphyrinogen III oxidase 2 [Bacillus
           thuringiensis serovar kurstaki str. T03a001]
          Length = 496

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 48/245 (19%), Positives = 80/245 (32%), Gaps = 9/245 (3%)

Query: 129 GPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
           G        EL E     +  ++    + D   +L++V   Y  K  V+ ++ I   C  
Sbjct: 127 GMSKEEAHQELRESYLIHEEKIELLQRIVD--CQLAVVPDLYRLKEEVSIYIGIPF-CPT 183

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT-- 246
            C +C  P         S+   +      +      +   G  V      G      T  
Sbjct: 184 KCAYCTFPAYAINGRQGSVDSFLGGLHYEVREIGKFLKEKGVKVTTIYYGGGTPTSITAE 243

Query: 247 -FSDLLYSLSEIKGLVR--LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
               L   + E    V+     T    R  +    K        +  + +  QS     L
Sbjct: 244 EMDMLYEEMYEAFPDVKNVREVTVEAGRPDTITPAKLEVLNKWNIDRISINPQSYHQETL 303

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           K++ R HT  E  +     R +  +  I+ D I+G PGE  D F+ T+D  +K+      
Sbjct: 304 KAIGRHHTVEETIEKYHLAREMGMN-NINMDLIIGLPGEGLDIFKHTLDETEKLMPESLT 362

Query: 364 SFKYS 368
               S
Sbjct: 363 VHTLS 367


>gi|154248960|ref|YP_001409785.1| radical SAM domain-containing protein [Fervidobacterium nodosum
           Rt17-B1]
 gi|154152896|gb|ABS60128.1| Radical SAM domain protein [Fervidobacterium nodosum Rt17-B1]
          Length = 568

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 48/260 (18%), Positives = 92/260 (35%), Gaps = 41/260 (15%)

Query: 156 VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS-RSLSQVVDEA 214
           V   +E L  V      +  +TA      GC   C+FC + + +G  ++ RS   +++E 
Sbjct: 280 VHPFYENLGRVKAIETVRFSITAV----RGCFGNCSFCAITHHQGTHVTFRSEESILEEV 335

Query: 215 R----------KLIDNGVCEITLLGQNVN----------------AWRGKGLDGEKCTFS 248
           +           ++D G     + G                      +  G +     F 
Sbjct: 336 KILTKMPDFRGTIVDVGGPTANMYGYTCTIREKNGQCLKSCMFPKVCKSIGREDSAIKFI 395

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLH----LPVQSGSDRILK 304
           +LL  +  +  +  +   +    D+      A   ++ L+ Y      L  +     +LK
Sbjct: 396 NLLQKIKSLPKVNHVFVGSGIRHDLILYSTDAQYIIENLVDYTSGQLKLAPEHAHPNVLK 455

Query: 305 SMNRRHTAYEYRQIIDRI----RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK-IGY 359
            M++  +   + +   R     R    +  +   FIVG PGE + +    M+ V K +GY
Sbjct: 456 LMHKP-SIELFLEFKKRFEEASRRKGQEKYVIGYFIVGHPGEGEKENLYLMEFVKKHLGY 514

Query: 360 AQAFSFKYSPRLGTPGSNML 379
                  ++P  GT  + M 
Sbjct: 515 IPQQVQIFTPTPGTLSTTMY 534


>gi|296133947|ref|YP_003641194.1| oxygen-independent coproporphyrinogen III oxidase [Thermincola sp.
           JR]
 gi|296032525|gb|ADG83293.1| oxygen-independent coproporphyrinogen III oxidase [Thermincola
           potens JR]
          Length = 378

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 41/212 (19%), Positives = 74/212 (34%), Gaps = 24/212 (11%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK----GLD 241
           C K C +C         IS             +   + EI L GQ ++    +     + 
Sbjct: 12  CVKKCNYC-------DFISYPYDA--GLTASYVSALLKEIELYGQQLSGKDKELASVYIG 62

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL-------MPYLHLP 294
           G   +   +   L  + G +   +      +++        D + L          L + 
Sbjct: 63  GGTPSLLSVP-QLEAVFGNLGSFFDYVPGAEVTVEANPGTLDREKLNNWKAFGCNRLSIG 121

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           +QS +D +L+ + R H A E        R    D  I+ D I G PG+   D+  T+  V
Sbjct: 122 IQSMNDSLLRFLGRIHRADEAAHAFYLAREAGFD-NINIDLIFGIPGQGMHDWSDTLRRV 180

Query: 355 DKIGYAQAFSFKYSPRLGTPGSNM--LEQVDE 384
            ++G     ++      GTP + +    Q+  
Sbjct: 181 LELGPEHISAYGLKIEEGTPLARLQAEGQLPP 212


>gi|238028739|ref|YP_002912970.1| lipoyl synthase [Burkholderia glumae BGR1]
 gi|237877933|gb|ACR30266.1| Lipoyl synthase [Burkholderia glumae BGR1]
          Length = 328

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 80/220 (36%), Gaps = 10/220 (4%)

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
           + +  ++ +    E  S  + G    +G   F+ + + C + C FC V + R   +    
Sbjct: 63  KTILREHKLHTVCEEASCPNIGECFGKGTATFMIMGDKCTRRCPFCDVGHGRPDPL--DP 120

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
            +  + AR +    +  + +   +    R    DG    F + +  + E     R+   T
Sbjct: 121 QEPANLARTIGALRLKYVVITSVD----RDDLRDGGAGHFVECIRQVREQSPETRIEILT 176

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
               D    L +A G L+   P +         R+ K            +++   +++ P
Sbjct: 177 P---DFRGRLDRAIGILNAAPPDVMNHNLETVPRLYKEARPGSDYAHSLKLLKDFKALHP 233

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           ++A  S  +VG  GET ++    M  + +         +Y
Sbjct: 234 EVATKSGLMVGL-GETPEEILQVMRDLREHDVDMLTIGQY 272


>gi|210612681|ref|ZP_03289429.1| hypothetical protein CLONEX_01631 [Clostridium nexile DSM 1787]
 gi|210151483|gb|EEA82491.1| hypothetical protein CLONEX_01631 [Clostridium nexile DSM 1787]
          Length = 58

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 27/58 (46%), Positives = 39/58 (67%)

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
            TSHP+D+SD LI+       +  +LHLPVQSGS  ILK MNR +T  +Y +++ +I+
Sbjct: 1   MTSHPKDLSDELIEVMRHSKKICKHLHLPVQSGSTEILKKMNRHYTKEQYLELVRKIK 58


>gi|282165509|ref|YP_003357894.1| hypothetical protein MCP_2839 [Methanocella paludicola SANAE]
 gi|282157823|dbj|BAI62911.1| conserved hypothetical protein [Methanocella paludicola SANAE]
          Length = 553

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 40/260 (15%), Positives = 86/260 (33%), Gaps = 33/260 (12%)

Query: 184 EGCDKF-CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQ-NVNAWRGKGLD 241
            GC +  C+FC      G    R +  +  EA  L   G     L  Q ++  +  KG  
Sbjct: 184 RGCFRGTCSFC-TERFYGRPDFRPVEDIAREAGALYSLGARYFRLGRQPDLLTYMSKGDG 242

Query: 242 GEKCTFSDLLYSL-----SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY------ 290
                  + +  L          L  L     +P  ++     +   L V++ Y      
Sbjct: 243 EFPPPNIEAIERLYSGIRRAAPDLKVLHLDNMNPGTIARYPEASREALKVVVKYHTSGDV 302

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV--------RPDIAISSDFIVGFPGE 342
               ++S    ++K  + +    E  + I  +  V         P++    +F+ G  GE
Sbjct: 303 AAFGMESADPHVIKLNDLKALPEEVLEAIRIVNEVGGAMGPSGLPELLPGLNFVHGLLGE 362

Query: 343 TDDDFRATMDLVDKIGYA------QAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQK 396
           T + FR   + + ++         +    +  P  GT     + +V + +  +       
Sbjct: 363 TKETFRLNYEFLKRL-LDEGLLVRRINIRQVMPFEGTC----MGEVGDKIARKHKGVFHA 417

Query: 397 KLREQQVSFNDACVGQIIEV 416
              + +   +   + +++ V
Sbjct: 418 YKEKIRKEIDMEMLRRVVPV 437


>gi|260170988|ref|ZP_05757400.1| hypothetical protein BacD2_03904 [Bacteroides sp. D2]
 gi|315919308|ref|ZP_07915548.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313693183|gb|EFS30018.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 619

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 49/271 (18%), Positives = 96/271 (35%), Gaps = 44/271 (16%)

Query: 151 DTDYSVEDKFERLSIVDGGYNR---KRGVTAFLTIQEGCDKFCTFCVVPYTRGIE-ISRS 206
           D D+S +  + RL        R      +   + I  GC   C FC +   +G   +SRS
Sbjct: 287 DLDHSFDLPYTRLPHPKYKGKRIPAYDMIKFSINIHRGCFGGCAFCTISAHQGKFIVSRS 346

Query: 207 LSQVVDEARKLI---DNGVCEITLLGQNVNAWRGKGLDGEKCT----------------- 246
              ++ E +++I   D       L G + N ++ KG D   C                  
Sbjct: 347 KESILKEVKEVIQLPDFKGYLSDLGGPSANMYQMKGKDEAICKKCKRPSCIHPKVCPNLN 406

Query: 247 -----FSDLLYSLSEIKGL--------VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLH- 292
                  D+ +++  + G+        VR        +D +     A    ++++ ++  
Sbjct: 407 TDHRPLLDIYHAVDTLPGIKKSFIGSGVRYDLLLHQSKDETTNRSTAEYTRELIVNHVSG 466

Query: 293 ---LPVQSGSDRILKSMNRRH--TAYEYRQIIDRI-RSVRPDIAISSDFIVGFPGETDDD 346
              +  +  SDR+L  M +        +++I DRI R       +   FI   PG  ++D
Sbjct: 467 RLKVAPEHTSDRVLSIMRKPSFEQFETFKKIFDRINREENLRQQLIPYFISSHPGCNEED 526

Query: 347 FRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
                 +  ++ +       ++P   T  + 
Sbjct: 527 MAELAVITKRLDFHLEQVQDFTPTPMTVATE 557


>gi|228957288|ref|ZP_04119050.1| Oxygen-independent coproporphyrinogen III oxidase 2 [Bacillus
           thuringiensis serovar pakistani str. T13001]
 gi|228802374|gb|EEM49229.1| Oxygen-independent coproporphyrinogen III oxidase 2 [Bacillus
           thuringiensis serovar pakistani str. T13001]
          Length = 496

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 48/245 (19%), Positives = 80/245 (32%), Gaps = 9/245 (3%)

Query: 129 GPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
           G        EL E     +  ++    + D   +L++V   Y  K  V+ ++ I   C  
Sbjct: 127 GMSKEEAHQELRESYLIHEEKIELLQRIVD--CQLAVVPDLYRLKEEVSIYIGIPF-CPT 183

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT-- 246
            C +C  P         S+   +      +      +   G  V      G      T  
Sbjct: 184 KCAYCTFPAYAINGRQGSVDSFLGGLHYEVREIGKFLKEKGVKVTTIYYGGGTPTSITAE 243

Query: 247 -FSDLLYSLSEIKGLVR--LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
               L   + E    V+     T    R  +    K        +  + +  QS     L
Sbjct: 244 EMDMLYEEMYEAFPDVKNVREVTVEAGRPDTITPAKLEVLNKWNIDRISINPQSYHQETL 303

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           K++ R HT  E  +     R +  +  I+ D I+G PGE  D F+ T+D  +K+      
Sbjct: 304 KAIGRHHTVEETIEKYHLAREMGMN-NINMDLIIGLPGEGLDIFKHTLDETEKLMPESLT 362

Query: 364 SFKYS 368
               S
Sbjct: 363 VHTLS 367


>gi|166031160|ref|ZP_02233989.1| hypothetical protein DORFOR_00846 [Dorea formicigenerans ATCC
           27755]
 gi|166029007|gb|EDR47764.1| hypothetical protein DORFOR_00846 [Dorea formicigenerans ATCC
           27755]
          Length = 490

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 38/232 (16%), Positives = 80/232 (34%), Gaps = 18/232 (7%)

Query: 173 KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNV 232
           + G + ++ I   C   C++C        +    +   +    K ++         G+  
Sbjct: 156 ENGYSLYVGIPF-CPTVCSYCSFSSGALGDWEHRVEDYLAALMKELEAIAKISE--GRKA 212

Query: 233 NAWRGKGLDGEKCTFSDLLYSLSEIK------GLVRLRYTTSHPRDMSDCLIKAHGDLDV 286
           +     G          L   L+ I       GL+        P  ++   ++   +  +
Sbjct: 213 DTIYMGGGTPTTLNADQLDRLLTCIDRHFVREGLLEFTVEAGRPDSITKEKLQVLRNHGI 272

Query: 287 LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDD 346
               + +  QS   + L ++ R+HT  +  +     R +  D  I+ D I G PGET +D
Sbjct: 273 --NRISINPQSMQQKTLDTIGRKHTVEQVYEAFHMARKLGFD-NINMDIIAGLPGETPED 329

Query: 347 FRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKL 398
              T+  +  +G                 + M +   E  + +RL  +Q ++
Sbjct: 330 MEDTLRQIALLGPDNLTVHS---LAIKRAAKMGQ---EEREGKRLTIIQDEI 375


>gi|289522463|ref|ZP_06439317.1| Fe-S oxidoreductase [Anaerobaculum hydrogeniformans ATCC BAA-1850]
 gi|289504299|gb|EFD25463.1| Fe-S oxidoreductase [Anaerobaculum hydrogeniformans ATCC BAA-1850]
          Length = 441

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 50/309 (16%), Positives = 106/309 (34%), Gaps = 25/309 (8%)

Query: 75  KAAEKVYSFLGRIRN-LKNSRIKEGGDLLVVVAGCV------AQAEGEEILRRSPIVNVV 127
           KA  + +   G  +  L+          ++++   +       +   E +    P V ++
Sbjct: 85  KAIPRRFYHFGMTKEELEERLSAIEPPDIILITSGMTYWYLGVKWCIEIVKGIFPDVPLL 144

Query: 128 VGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCD 187
           +G       P+   +      V  T   V      L + D                 GC 
Sbjct: 145 LGGIYAQLCPDH-AQGLGADGVQTTPLGVPFFRPALDLYDAPE------YGITITSIGCP 197

Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTF 247
             C +C           R++ +V+DE       G+  +     ++  +    L  ++  F
Sbjct: 198 LNCKYCASKRLWPKYRKRNVDEVIDEI--SFQAGMRSV----GDIAFYDDALLLDKERHF 251

Query: 248 SDLLYSLSEIKGLVRLRYTT-SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306
             L   L +  G +R       H R++ +   +   +       + L ++S    I K+ 
Sbjct: 252 YPLCDELKKRHGHLRYHTPNGLHVREIDEVCARYLYETG--FKTIRLSLESTDPSIQKAG 309

Query: 307 NRRHTAYEYRQIIDR-IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           + +    +Y + ++  +++      I +  +VG PG+  +     +  V  +G A     
Sbjct: 310 SDKVHDDQYIRAVENLLKAGYTHEDIETYILVGLPGQKYEAVERAILFVKSLG-ATVKLA 368

Query: 366 KYSPRLGTP 374
           +YSP  GTP
Sbjct: 369 EYSPIPGTP 377


>gi|228938136|ref|ZP_04100755.1| Oxygen-independent coproporphyrinogen III oxidase 2 [Bacillus
           thuringiensis serovar berliner ATCC 10792]
 gi|228971011|ref|ZP_04131648.1| Oxygen-independent coproporphyrinogen III oxidase 2 [Bacillus
           thuringiensis serovar thuringiensis str. T01001]
 gi|228977615|ref|ZP_04138005.1| Oxygen-independent coproporphyrinogen III oxidase 2 [Bacillus
           thuringiensis Bt407]
 gi|228782085|gb|EEM30273.1| Oxygen-independent coproporphyrinogen III oxidase 2 [Bacillus
           thuringiensis Bt407]
 gi|228788820|gb|EEM36762.1| Oxygen-independent coproporphyrinogen III oxidase 2 [Bacillus
           thuringiensis serovar thuringiensis str. T01001]
 gi|228821535|gb|EEM67541.1| Oxygen-independent coproporphyrinogen III oxidase 2 [Bacillus
           thuringiensis serovar berliner ATCC 10792]
 gi|326938638|gb|AEA14534.1| coproporphyrinogen III oxidase [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 495

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 48/245 (19%), Positives = 80/245 (32%), Gaps = 9/245 (3%)

Query: 129 GPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
           G        EL E     +  ++    + D   +L++V   Y  K  V+ ++ I   C  
Sbjct: 126 GMSKEEAHQELRESYLIHEEKIELLQRIVD--CQLAVVPDLYRLKEEVSIYIGIPF-CPT 182

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT-- 246
            C +C  P         S+   +      +      +   G  V      G      T  
Sbjct: 183 KCAYCTFPAYAINGRQGSVDSFLGGLHYEVREIGKFLKEKGVKVTTIYYGGGTPTSITAE 242

Query: 247 -FSDLLYSLSEIKGLVR--LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
               L   + E    V+     T    R  +    K        +  + +  QS     L
Sbjct: 243 EMDMLYEEMYEAFPDVKNVREVTVEAGRPDTITPAKLEVLNKWNIDRISINPQSYHQETL 302

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           K++ R HT  E  +     R +  +  I+ D I+G PGE  D F+ T+D  +K+      
Sbjct: 303 KAIGRHHTVEETIEKYHLAREMGMN-NINMDLIIGLPGEGLDIFKHTLDETEKLMPESLT 361

Query: 364 SFKYS 368
               S
Sbjct: 362 VHTLS 366


>gi|239617751|ref|YP_002941073.1| Radical SAM domain protein [Kosmotoga olearia TBF 19.5.1]
 gi|239506582|gb|ACR80069.1| Radical SAM domain protein [Kosmotoga olearia TBF 19.5.1]
          Length = 590

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 38/257 (14%), Positives = 91/257 (35%), Gaps = 19/257 (7%)

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
           +VV    S  + +   +     +       A + +  GCD+ C FC           R+ 
Sbjct: 213 KVVKAVISDINDYRIDTKPVVPFMGVVHDRAVVEVMRGCDRGCRFCQAGMFYRPVRERNH 272

Query: 208 SQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
             ++++ ++LIDN G  E++ L  +   +                  ++       L   
Sbjct: 273 KAILEDIKELIDNTGYEELSFLSLSTMDYTAIQELTNSILPYLGERKVA-------LSLP 325

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
           ++        +      +      L    ++G+ R+   +N+  +  +    ++   +++
Sbjct: 326 STRVDSFGIEIASKIASVRK--TGLTFAPEAGTQRLRDVINKNISEEDLMNSVNS--AIK 381

Query: 327 PDI-AISSDFIVGFPGETDDDFRATMDLVDKIGYA-----QAFSFKYSPRLGTPGSNMLE 380
                +   F++G P ET++D    ++L  K   A           + P+  TP     +
Sbjct: 382 HGWRRLKLYFMIGLPTETEEDINGIVELARKAKKAGLKDVTVSVSIFVPKPHTP-FQFAK 440

Query: 381 QVDENVKAERLLCLQKK 397
           Q+D     +++  L+  
Sbjct: 441 QIDPTEARKKMKILRAI 457


>gi|113953183|ref|YP_729601.1| radical SAM domain-containing protein [Synechococcus sp. CC9311]
 gi|113880534|gb|ABI45492.1| radical SAM domain protein [Synechococcus sp. CC9311]
          Length = 534

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 45/293 (15%), Positives = 97/293 (33%), Gaps = 29/293 (9%)

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVV-VGPQTYYRLPELLERARF 145
           +R+      +   +   V+ G       E++ R  P   ++ +G         L ++   
Sbjct: 138 VRHGLKRARRHSPEARAVLGGGAVSVFYEQLGRSLPKGTIISIGEGEPLLEKLLAQQPLD 197

Query: 146 GKRVVDTDYS-----VEDKFERLSIVDGGYNRKRGVTA-------------FLTIQEGCD 187
           G+R      +     + ++ E        YN    +                +  + GC 
Sbjct: 198 GERCFVVGEAPRPGLIHEQPESRPKTACDYNYISSIWPQLDWYLEGGDFYVGVQTKRGCP 257

Query: 188 KFCTFCVVPYTRGIEISR-SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT 246
             C +CV     G ++    + +VV E R+L D GV             R    D +   
Sbjct: 258 HNCCYCVYTVVEGKQVRVNPVQEVVAEMRQLYDRGVRGFWFTDAQFIPARKYIEDAK--- 314

Query: 247 FSDLLYSLSEIKGLVRLRY-TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
             +LL ++ + +GL  +R+       ++   L +   +    M Y  + + SGS  +++ 
Sbjct: 315 --ELLRAI-KAEGLTGIRWAAYIRADNLDPELAQLMVETG--MSYFEIGITSGSQELVRK 369

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           M   +           +        +S ++      E  +  R T+    ++ 
Sbjct: 370 MRMGYNLRTVLDSCRMLAEAGFHDHVSVNYSFNVIDERPETIRQTVAYHRELE 422


>gi|119773995|ref|YP_926735.1| hypothetical protein Sama_0858 [Shewanella amazonensis SB2B]
 gi|119766495|gb|ABL99065.1| conserved hypothetical protein [Shewanella amazonensis SB2B]
          Length = 317

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 38/187 (20%), Positives = 64/187 (34%), Gaps = 11/187 (5%)

Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTF 247
             CTFC VP             +  + ++ +      +  +            D      
Sbjct: 51  GGCTFCHVPSFNAD--DGQQFDIPSQLKRQMAGRTDALYFI---YFQAYTSTYDEVAVLK 105

Query: 248 SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV--LMPYLHLPVQSGSDRILKS 305
                +LS   G V   +  + P  + D ++    D     +  +L L +Q+  D  LK 
Sbjct: 106 RRYDEALS--IGNVAGLFVGTRPDCVPDAVLHLLADYQQQGIDVWLDLGLQTARDDTLKR 163

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           +NR H    Y   + R R +   I + +  I+G PGET +DF  +   V  +G       
Sbjct: 164 INRGHDFAIYADAVTRARRL--GIKVCTHLILGLPGETSEDFVESHRQVLALGVDGLKLH 221

Query: 366 KYSPRLG 372
                 G
Sbjct: 222 PLHIVEG 228


>gi|134297074|ref|YP_001120809.1| lipoyl synthase [Burkholderia vietnamiensis G4]
 gi|134140231|gb|ABO55974.1| lipoic acid synthetase [Burkholderia vietnamiensis G4]
          Length = 330

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 77/221 (34%), Gaps = 12/221 (5%)

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
           + +  ++++    E  S  + G    +G   F+ + + C + C FC V + R   +    
Sbjct: 65  KTILREHNLHTVCEEASCPNIGECFGKGTATFMIMGDKCTRRCPFCDVGHGRPDPL--DA 122

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
            +  + AR +    +  + +   +    R    DG    F + +          R+   T
Sbjct: 123 DEPKNLARTIAALKLKYVVITSVD----RDDLRDGGAAHFVECIRETRAQSPDTRIEILT 178

Query: 268 SHPRDMSDCLIKAH-GDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
              R   D  I         +M +    V     R+ K            +++   +++ 
Sbjct: 179 PDFRGRLDRAISILNAAPPDVMNHNLETV----PRLYKEARPGSDYAHSLKLLKDFKALH 234

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           PD+A  S  +VG  GET+++    M  +           +Y
Sbjct: 235 PDVATKSGLMVGL-GETEEEILQVMRDLRAHDVDMLTIGQY 274


>gi|239826166|ref|YP_002948790.1| coproporphyrinogen III oxidase [Geobacillus sp. WCH70]
 gi|239806459|gb|ACS23524.1| Coproporphyrinogen dehydrogenase [Geobacillus sp. WCH70]
          Length = 501

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 44/244 (18%), Positives = 86/244 (35%), Gaps = 19/244 (7%)

Query: 140 LERARFGKRVVDTDYSVEDKFE--------RLSIVDGGYNRKRGVTAFLTIQEGCDKFCT 191
           L +    +++ D     E+K E        +L++V   Y+    V+ ++ I   C   C 
Sbjct: 133 LSKEEAHRQLRDDYLVTEEKIELMQEIVDRQLTVVPDLYDLAHEVSIYIGIPF-CPTKCA 191

Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLL 251
           +C  P         S+   +      +      +   G N+      G      T  ++ 
Sbjct: 192 YCTFPAYAIGGRQGSVDAFLAGLHYEMREVGRFLKERGINITTIYYGGGTPTSITAEEMD 251

Query: 252 YSLSEI----KGLVRLRYTTSH---PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304
              +E+      + R+R  T     P  ++   +      ++    + +  QS     LK
Sbjct: 252 RLYAEMYQSFPNVERVREITVEAGRPDTITPEKLNVLKKWNI--DRISINPQSYIQETLK 309

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
           ++ R HT  E  +     R +  +  I+ D I+G PGE   +F  T+   +K+       
Sbjct: 310 AIGRHHTVDETIEKFHLAREMGMN-NINMDLIIGLPGEGTKEFSYTLAQTEKLMPESLTV 368

Query: 365 FKYS 368
              S
Sbjct: 369 HTLS 372


>gi|296933177|gb|ADH93700.1| NocB [Amycolatopsis fastidiosa]
          Length = 391

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 79/229 (34%), Gaps = 17/229 (7%)

Query: 186 CDKFCTFC----VVP---YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK 238
           C   CTFC     +P     R  E S   + V     ++   G  ++   GQ        
Sbjct: 11  CHSKCTFCDWVQAIPTKDLLRKPEDSVRKNYVRALVTEIETRGA-QLRAAGQVPYVVYWG 69

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL----MPYLHLP 294
           G        ++       +     L        + S   +     L+         +   
Sbjct: 70  GGTASSLDNAEAEAIWGALDSAFDLSTVAEATIECSPDTVDK-AKLEFFRGLGFNRVSSG 128

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           VQS  D  L+ + RRHTA E  +I+   R    D  +S D + GFP +  D+ RAT++  
Sbjct: 129 VQSFDDARLRRLGRRHTAGEADRIVHHAREAGFD-EVSIDIMSGFPDQELDELRATVEKA 187

Query: 355 DKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQV 403
             +       + + P   TPG+ M  ++    K   L   Q    E + 
Sbjct: 188 VSLPLTHLSLYSFRP---TPGTFMRRKLAGTEKRAYLRKQQALFTEARR 233


>gi|270296340|ref|ZP_06202540.1| Fe-S oxidoreductase family 2 [Bacteroides sp. D20]
 gi|317480467|ref|ZP_07939561.1| radical SAM superfamily protein [Bacteroides sp. 4_1_36]
 gi|270273744|gb|EFA19606.1| Fe-S oxidoreductase family 2 [Bacteroides sp. D20]
 gi|316903361|gb|EFV25221.1| radical SAM superfamily protein [Bacteroides sp. 4_1_36]
          Length = 564

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 45/286 (15%), Positives = 99/286 (34%), Gaps = 33/286 (11%)

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVV---GPQTYYRLPELLER 142
           ++ ++         +   ++ G       E+ L ++P ++ V    G + + +      +
Sbjct: 71  QLLHITARLKALLPNSCFILGGPEFLGNNEDFLHKNPFIDCVFRGEGEEAFPQWLSCWNQ 130

Query: 143 ARF------------GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTI--QEGCDK 188
                           K+ +D   +    F RL +     +       F+ +    GC  
Sbjct: 131 PEKWNSIPGLCYMNPQKQYIDNGIARVLNFSRL-VPPENSSFFNWSKPFVQLETTRGCFN 189

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS 248
            C FC V        + S+  + +  + +  +G+  + +L +  N               
Sbjct: 190 TCAFC-VSGEEKPVRTLSIESIRERLQIIHSHGIKNVRVLDRTFNY--------NPRRAK 240

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
           +LL    E    +   +   HP  +S+ L      L   + +L   +QS  + +L+   R
Sbjct: 241 ELLQLFLEFNPDI-CFHLEIHPALLSEELKNELKKLPKGLLHLEAGIQSLREPVLQKSRR 299

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFP----GETDDDFRAT 350
             +  +  Q +  + S+ P++   +D I G P     E  +D R  
Sbjct: 300 MGSLEDSLQGLRFLCSL-PNMETHADLIAGLPLYRLSEIFEDVRTL 344


>gi|154492220|ref|ZP_02031846.1| hypothetical protein PARMER_01854 [Parabacteroides merdae ATCC
           43184]
 gi|154087445|gb|EDN86490.1| hypothetical protein PARMER_01854 [Parabacteroides merdae ATCC
           43184]
          Length = 604

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 52/314 (16%), Positives = 101/314 (32%), Gaps = 66/314 (21%)

Query: 126 VVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTA------- 178
            +       +   +L++      VV+  +    + E  +  D  Y R             
Sbjct: 239 HIEEESNKQQASRILQKVGKQTIVVNPPFPPMTEEEIDASFDLPYTRLPHPKYKGKTIPA 298

Query: 179 ------FLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEAR---KLIDNGVCEITLL 228
                  + I  GC   C FC +   +G  I SRS   ++ E +   ++ D       L 
Sbjct: 299 FEMIKFSVNIHRGCFGGCAFCTISAHQGKFIASRSKESILKEVKEITQMPDFKGYLSDLG 358

Query: 229 GQNVNAWRGKGLDGEKCT----------------------FSDLLYSLSEIKGLVRLRYT 266
           G + N +R KG + + C                         D+   +  +  + R    
Sbjct: 359 GPSANMYRMKGKNPDICAQCKKPSCISPVICKNLNADHTPLLDIYKEVDSMPEIKRSFIG 418

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLH----------------LPVQSGSDRILKSMNRRH 310
           +    D+   L+  + D D L    H                +  +   D +LK M +  
Sbjct: 419 SGIRYDL---LLHRYAD-DNLNKAAHTYMEELIAHHVSGRLKVAPEHTEDNVLKMMRKP- 473

Query: 311 TAY---EYRQIIDRIRSVRPDIA--ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           +     ++++I DR+ + +  +   +   FI   PG T+ D         K+ +      
Sbjct: 474 SFELFGQFKKIFDRV-NKQHGLNQQLIPYFISSHPGCTEADMANLAIQTKKLHFQLEQVQ 532

Query: 366 KYSPRLGTPGSNML 379
            ++P   T  + M 
Sbjct: 533 DFTPTPMTLATEMY 546


>gi|150021382|ref|YP_001306736.1| radical SAM domain-containing protein [Thermosipho melanesiensis
           BI429]
 gi|149793903|gb|ABR31351.1| Radical SAM N-terminal domain protein [Thermosipho melanesiensis
           BI429]
          Length = 554

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 44/226 (19%), Positives = 78/226 (34%), Gaps = 32/226 (14%)

Query: 184 EGCDKFCTFCV-VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD- 241
            GC   C FC    +     +SRS   +++E + L      + T+           G+D 
Sbjct: 301 RGCYGMCAFCALTQHQTTHIVSRSKESILEEVKILKRMKKFKGTITDVGGPTANMYGVDC 360

Query: 242 ------GEKCTFSD--------------LLYSLSEIKGLVRLRYTTSHPRDMSDCLIK-- 279
                 G+   F                LL  L  IK  V+  + +S  R     L    
Sbjct: 361 SIRRFMGQCERFCLFEKPCKNALVDHSILLDLLYSIKKEVKNVFISSGIRH-DLVLADKN 419

Query: 280 ----AHGDLDVLMP-YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSD 334
                  +L    P  L L  +   +++L+ M +  +  ++ Q      S      + + 
Sbjct: 420 FGEIFIKELPKFTPGQLKLAPEHSHEKVLRLMRKP-SIEKFLQFKKMYESNAKKRYVIAY 478

Query: 335 FIVGFPGETDDDFRATMDLV-DKIGYAQAFSFKYSPRLGTPGSNML 379
           FIVG PGE+  +       +  ++GY       ++P  GT  + + 
Sbjct: 479 FIVGHPGESFKENNHLKKFIRKELGYKPQQIQIFTPTPGTLSTAIY 524


>gi|78047291|ref|YP_363466.1| hypothetical protein XCV1735 [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|78035721|emb|CAJ23412.1| conserved hypothetical protein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
          Length = 517

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 47/251 (18%), Positives = 75/251 (29%), Gaps = 22/251 (8%)

Query: 142 RARFGKRVVDTDYS---VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
           R   G +  D   S     D  +          R    +  +    GC   C +C  P  
Sbjct: 192 RVHPGAQPPDARLSGLPAWDLVDMPRYRRFWQQRHGHFSLNMAASRGCPFRCNWCAKPIW 251

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258
                 R   +V  E   L      +   +  ++  +    ++            LS+  
Sbjct: 252 GNHYKRRGAEEVAAEMIHLKRTFRPDHIWMADDIFGFHIDWVET-------FAQQLSDAD 304

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
           G V   +T     D++     A            +  +SGS RIL  M +     E    
Sbjct: 305 GAV--PFTIQTRADLASE-RMAAALARAGCVEAWIGAESGSQRILDKMTKGTQVGEVIAA 361

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
            +R+ +    I +     +G+ GE  DD  AT  LV +            P  GT     
Sbjct: 362 RERLGTQ--GIRVGFFIQLGYLGEELDDILATRALVTQANPDIIGVSVSYPLPGTKFY-- 417

Query: 379 LEQVDENVKAE 389
                E VK +
Sbjct: 418 -----EEVKNQ 423


>gi|298384567|ref|ZP_06994127.1| radical SAM domain protein [Bacteroides sp. 1_1_14]
 gi|298262846|gb|EFI05710.1| radical SAM domain protein [Bacteroides sp. 1_1_14]
          Length = 620

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 47/271 (17%), Positives = 89/271 (32%), Gaps = 44/271 (16%)

Query: 151 DTDYSVEDKFERLSIVDGGYNR---KRGVTAFLTIQEGCDKFCTFCVVPYTRGIE-ISRS 206
           + D+S +  + RL        R      +   + I  GC   C FC +   +G   +SRS
Sbjct: 287 ELDHSYDLPYTRLPHPKYKGKRIPAYDMIKFSVNIHRGCFGGCAFCTISAHQGKFIVSRS 346

Query: 207 LSQVVDEARKLI---DNGVCEITLLGQNVNAWRGKGLDGEKCT----------------- 246
              ++ E ++++   D       L G + N ++ KG D   C                  
Sbjct: 347 KESILKEVKEVMQLPDFKGYLSDLGGPSANMYQMKGKDEAICKKCKRPSCIHPKVCPNLN 406

Query: 247 -----FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL---------- 291
                  D+  ++  I G+ +    +    D+     K          Y           
Sbjct: 407 SDHRPLLDIYKAVDAIPGIKKSFIGSGVRYDLLLHQSKDAATNRSTAEYTRELIVNHVSG 466

Query: 292 --HLPVQSGSDRILKSMNRRH--TAYEYRQIIDRI-RSVRPDIAISSDFIVGFPGETDDD 346
              +  +  SDR+L  M +        +++I DRI R       +   FI   PG  ++D
Sbjct: 467 RLKVAPEHTSDRVLSIMRKPSFEQFETFKKIFDRINREENLRQQLIPYFISSHPGCKEED 526

Query: 347 FRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
                 +  ++ +       ++P   T  + 
Sbjct: 527 MAELAVITKRLDFHLEQVQDFTPTPMTVATE 557


>gi|206967991|ref|ZP_03228947.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Bacillus cereus AH1134]
 gi|218234955|ref|YP_002365659.1| coproporphyrinogen III oxidase [Bacillus cereus B4264]
 gi|206736911|gb|EDZ54058.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Bacillus cereus AH1134]
 gi|218162912|gb|ACK62904.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Bacillus cereus B4264]
          Length = 495

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 48/245 (19%), Positives = 80/245 (32%), Gaps = 9/245 (3%)

Query: 129 GPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
           G        EL E     +  ++    + D   +L++V   Y  K  V+ ++ I   C  
Sbjct: 126 GMSKEEAHQELRESYLIHEEKIELLQRIVD--CQLAVVPDLYRLKEEVSIYIGIPF-CPT 182

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT-- 246
            C +C  P         S+   +      +      +   G  V      G      T  
Sbjct: 183 KCAYCTFPAYAINGRQGSVDSFLGGLHYEVREIGKFLKEKGVKVTTIYYGGGTPTSITAE 242

Query: 247 -FSDLLYSLSEIKGLVR--LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
               L   + E    V+     T    R  +    K        +  + +  QS     L
Sbjct: 243 EMDMLYEEMYEAFPDVKNVREVTVEAGRPDTITPAKLEVLNKWNIDRISINPQSYHQETL 302

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           K++ R HT  E  +     R +  +  I+ D I+G PGE  D F+ T+D  +K+      
Sbjct: 303 KAIGRHHTVEETIEKYHLAREMGMN-NINMDLIIGLPGEGLDIFKHTLDETEKLMPESLT 361

Query: 364 SFKYS 368
               S
Sbjct: 362 VHTLS 366


>gi|160892014|ref|ZP_02073017.1| hypothetical protein BACUNI_04474 [Bacteroides uniformis ATCC 8492]
 gi|156858492|gb|EDO51923.1| hypothetical protein BACUNI_04474 [Bacteroides uniformis ATCC 8492]
          Length = 564

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 45/285 (15%), Positives = 97/285 (34%), Gaps = 31/285 (10%)

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVV---GPQTYYRLPELLER 142
           ++ ++         +   ++ G       E+ L ++P ++ V    G + + +      +
Sbjct: 71  QLLHITARLKALLPNSCFILGGPEFLGNNEDFLHKNPFIDCVFRGEGEEAFPQWLSCWNQ 130

Query: 143 ARF------------GKRVVDTDYSVEDKFERLSIVD-GGYNRKRGVTAFLTIQEGCDKF 189
                           K+ +D   +    F RL   +   +         L    GC   
Sbjct: 131 PEKWNSIPGLCYMNPQKQYIDNGIARVLNFSRLVPPENSCFFNWSKPFVQLETTRGCFNT 190

Query: 190 CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSD 249
           C FC V        + S+  + +  + +  +G+  + +L +  N               +
Sbjct: 191 CAFC-VSGEEKPVRTLSIESIRERLQIIHSHGIKNVRVLDRTFNY--------NPRRAKE 241

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
           LL    E    +   +   HP  +S+ L      L   + +L   +QS  + +L+   R 
Sbjct: 242 LLQLFLEFNPDI-CFHLEIHPALLSEELKNELKKLPKGLLHLEAGIQSLREPVLQKSRRM 300

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFP----GETDDDFRAT 350
            +  +  Q +  + S+ P++   +D I G P     E  +D R  
Sbjct: 301 GSLEDSLQGLRFLCSL-PNMETHADLIAGLPLYRLSEIFEDVRTL 344


>gi|300853981|ref|YP_003778965.1| oxygen-independent coproporphyrinogen III oxidase [Clostridium
           ljungdahlii DSM 13528]
 gi|300434096|gb|ADK13863.1| oxygen-independent coproporphyrinogen III oxidase [Clostridium
           ljungdahlii DSM 13528]
          Length = 382

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 41/196 (20%), Positives = 78/196 (39%), Gaps = 15/196 (7%)

Query: 186 CDKFCTFCVVPYTRGIE---ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG 242
           C K C +C  P   G E   +S +   +  +   + D  +  I + G       G     
Sbjct: 21  CKKKCLYCDFPSYSGKEKLMVSYT-KALARDIESVGDRKIRTIFIGG-------GTPTYL 72

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTS-HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
              +++++   L +I     L +T   +P   ++   K    +   +  L + +Q+  + 
Sbjct: 73  SLESWNNIYEVLKKINTEDNLEFTVEGNPGTFTEDKFKVLRKMG--VNRLSIGLQAWQNS 130

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
           ILK + R HT  ++ +  D  R       I+ D + G PG+T  D++ ++  V K+    
Sbjct: 131 ILKCIGRIHTLEDFLKTYDMARK-FGFSNINIDLMFGLPGQTIKDWKESLQNVVKLNPEH 189

Query: 362 AFSFKYSPRLGTPGSN 377
              +      GTP  N
Sbjct: 190 ISCYSLIVEKGTPFYN 205


>gi|258648598|ref|ZP_05736067.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Prevotella tannerae ATCC 51259]
 gi|260851383|gb|EEX71252.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Prevotella tannerae ATCC 51259]
          Length = 368

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 39/225 (17%), Positives = 85/225 (37%), Gaps = 15/225 (6%)

Query: 186 CDKFCTFCVV--PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
           C   C +C          +  R    ++DE +                       G    
Sbjct: 11  CASRCIYCDFYSTTQTTEQRERYTKALIDEIKARAGRW-------DDTFQTIYFGGGTPS 63

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKA--HGDLDVL-MPYLHLPVQSGSD 300
           + + +++ + ++ I+ L+ +  +     + +   I       L  L +  + L VQ+  D
Sbjct: 64  QLSIAEVSHIITAIQSLLHISPSAEITFEANPDDINENYVKQLKSLGINRISLGVQTFDD 123

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
             L  + RRHTA E  + ++ I ++  ++++  D I G P +T  D+   +    ++   
Sbjct: 124 ARLHFLRRRHTAKEAAKAVETISTIIENVSL--DLIYGLPNQTLSDWATDIRRALQLPIK 181

Query: 361 QAFSFKYSPRLGTPGSNM-LEQVDENVKAERLLCLQKKLREQQVS 404
              S+  +   GTP   +  +Q+ + VK +    + + L  Q   
Sbjct: 182 HLSSYALTIEEGTPLFQLQQKQIIKEVKEDITRAMYEMLMLQTEQ 226


>gi|257467032|ref|ZP_05631343.1| hypothetical protein FgonA2_06294 [Fusobacterium gonidiaformans
           ATCC 25563]
 gi|315918169|ref|ZP_07914409.1| Fe-S oxidoreductase [Fusobacterium gonidiaformans ATCC 25563]
 gi|313692044|gb|EFS28879.1| Fe-S oxidoreductase [Fusobacterium gonidiaformans ATCC 25563]
          Length = 586

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 45/281 (16%), Positives = 94/281 (33%), Gaps = 35/281 (12%)

Query: 135 RLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCV 194
            +P   +     KR +  D +    +    +        R   A + IQ GC + C FC 
Sbjct: 198 WIPRFHKEGEKVKRAIVEDLNDTSYYAEQIVPYIEVVHDR---ATVEIQRGCSRGCRFCQ 254

Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL 254
                     RSL + ++   K+I           Q+               +S++   +
Sbjct: 255 AGIVYRPVRERSLEKNLELIEKMI-----------QDTGYSEVSLSSLSSSDYSNIHQLI 303

Query: 255 SEIK-----GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
           + IK       V +   +      S  + ++               ++GS R+   +N+ 
Sbjct: 304 AGIKANPLNKNVGVSLPSLRMNPDSVRVAESISGGKR--TGFTFAPEAGSQRMRDIINKG 361

Query: 310 HTAYEYRQIIDR-IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY--------- 359
            T  E     +  +R+   ++     F++G P ET +D  A  +L  K+ +         
Sbjct: 362 VTEEEILATAEEAVRAGWDNLKFY--FMIGLPFETKEDVLAIHELAKKVMFKCRPISRRV 419

Query: 360 -AQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLR 399
                   + P+  TP +   +Q+      ++   L++  +
Sbjct: 420 QVTVSVSNFVPKPHTPFA-WQKQMGFEEMYDKHSLLREAFK 459


>gi|228919711|ref|ZP_04083073.1| Oxygen-independent coproporphyrinogen III oxidase 2 [Bacillus
           thuringiensis serovar huazhongensis BGSC 4BD1]
 gi|229068542|ref|ZP_04201843.1| Oxygen-independent coproporphyrinogen III oxidase 2 [Bacillus
           cereus F65185]
 gi|229078193|ref|ZP_04210767.1| Oxygen-independent coproporphyrinogen III oxidase 2 [Bacillus
           cereus Rock4-2]
 gi|229149209|ref|ZP_04277449.1| Oxygen-independent coproporphyrinogen III oxidase 2 [Bacillus
           cereus m1550]
 gi|229177407|ref|ZP_04304789.1| Oxygen-independent coproporphyrinogen III oxidase 2 [Bacillus
           cereus 172560W]
 gi|229189077|ref|ZP_04316104.1| Oxygen-independent coproporphyrinogen III oxidase 2 [Bacillus
           cereus ATCC 10876]
 gi|228594380|gb|EEK52172.1| Oxygen-independent coproporphyrinogen III oxidase 2 [Bacillus
           cereus ATCC 10876]
 gi|228606039|gb|EEK63478.1| Oxygen-independent coproporphyrinogen III oxidase 2 [Bacillus
           cereus 172560W]
 gi|228634239|gb|EEK90828.1| Oxygen-independent coproporphyrinogen III oxidase 2 [Bacillus
           cereus m1550]
 gi|228705115|gb|EEL57527.1| Oxygen-independent coproporphyrinogen III oxidase 2 [Bacillus
           cereus Rock4-2]
 gi|228714684|gb|EEL66558.1| Oxygen-independent coproporphyrinogen III oxidase 2 [Bacillus
           cereus F65185]
 gi|228840065|gb|EEM85344.1| Oxygen-independent coproporphyrinogen III oxidase 2 [Bacillus
           thuringiensis serovar huazhongensis BGSC 4BD1]
          Length = 496

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 48/245 (19%), Positives = 80/245 (32%), Gaps = 9/245 (3%)

Query: 129 GPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
           G        EL E     +  ++    + D   +L++V   Y  K  V+ ++ I   C  
Sbjct: 127 GMSKEEAHQELRESYLIHEEKIELLQRIVD--CQLAVVPDLYRLKEEVSIYIGIPF-CPT 183

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT-- 246
            C +C  P         S+   +      +      +   G  V      G      T  
Sbjct: 184 KCAYCTFPAYAINGRQGSVDSFLGGLHYEVREIGKFLKEKGVKVTTIYYGGGTPTSITAE 243

Query: 247 -FSDLLYSLSEIKGLVR--LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
               L   + E    V+     T    R  +    K        +  + +  QS     L
Sbjct: 244 EMDMLYEEMYEAFPDVKNVREVTVEAGRPDTITPAKLEVLNKWNIDRISINPQSYHQETL 303

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           K++ R HT  E  +     R +  +  I+ D I+G PGE  D F+ T+D  +K+      
Sbjct: 304 KAIGRHHTVEETIEKYHLAREMGMN-NINMDLIIGLPGEGLDIFKHTLDETEKLMPESLT 362

Query: 364 SFKYS 368
               S
Sbjct: 363 VHTLS 367


>gi|302879288|ref|YP_003847852.1| lipoic acid synthetase [Gallionella capsiferriformans ES-2]
 gi|302582077|gb|ADL56088.1| lipoic acid synthetase [Gallionella capsiferriformans ES-2]
          Length = 313

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 41/216 (18%), Positives = 77/216 (35%), Gaps = 12/216 (5%)

Query: 153 DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVD 212
           ++S+    E  S  + G    +G   F+ + + C + C FC V    G  +     +  +
Sbjct: 53  EHSLVTVCEEASCPNIGECFSKGTATFMILGDVCTRRCPFCDV--AHGKPLPPDAEEPAN 110

Query: 213 EARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
            AR +    +  + +   +    R    DG    FSD L ++       RL       R 
Sbjct: 111 LARSIGLLKLKYVVITSVD----RDDLRDGGAQHFSDCLSAIRASSPATRLEILVPDFRG 166

Query: 273 MSDCLIKAHG-DLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAI 331
             +  + A    L  ++ +    V     R+ K            +++   ++  PDI  
Sbjct: 167 RLEEALDALALSLPDVLNHNLETV----PRLYKLARPGADYAHSLKLLQDFKTRFPDIPT 222

Query: 332 SSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
            S  ++G  GETD++    M  +   G       +Y
Sbjct: 223 KSGVMLGL-GETDEEVLEVMRDLRAHGVNMLTIGQY 257


>gi|32476435|ref|NP_869429.1| methyltransferase or Fe-S oxidoreductase [Rhodopirellula baltica SH
           1]
 gi|32446980|emb|CAD78886.1| probable methyltransferase or Fe-S oxidoreductase [Rhodopirellula
           baltica SH 1]
          Length = 628

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 49/301 (16%), Positives = 95/301 (31%), Gaps = 31/301 (10%)

Query: 101 LLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKF 160
             VVV G    ++ +         + V+  +    +P  L+  R G      +   +   
Sbjct: 158 KFVVVGGPDPTSQPQ----IYQDADAVIVGEGELTIPMWLDAWRDGNPKGQFESPHKPDV 213

Query: 161 ERLSIVDGGYNRKRGVTAF-LTIQEGCDKFCTFC-VVPYTRGIEISRSLSQVVDEARKLI 218
                               +    GC   C FC ++         ++  Q + E +KL 
Sbjct: 214 TTTPTPRFDLVDFNDYLHVGVQSSRGCPYNCEFCDIIELFGRRPRVKTPDQFLAELQKLY 273

Query: 219 DNGVC-EITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM---- 273
           D G    +     N          G +     LL +L +        +  S    +    
Sbjct: 274 DLGYRGWVDFTDDNFI--------GNRKLIKPLLVALKQWNEDHNYPFVFSTEASINLAD 325

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR-PDIAIS 332
              L++   D+     Y+ L ++S  +  L    +R        IIDR+R++    I+++
Sbjct: 326 DKELLELMRDVQ--FRYVFLGIESPDEETLIHTQKRINTVHP--IIDRVRTIYDHGISVA 381

Query: 333 SDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLL 392
           +  I+GF  +        +  + + G   +     S    T       Q+   +  ER L
Sbjct: 382 AGLIIGFDTDKPGTDGPMIRFIQESGITLSMVGLLSALPNT-------QLTRRLAKERRL 434

Query: 393 C 393
            
Sbjct: 435 I 435


>gi|327539340|gb|EGF25961.1| radical SAM domain protein [Rhodopirellula baltica WH47]
          Length = 560

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 49/301 (16%), Positives = 95/301 (31%), Gaps = 31/301 (10%)

Query: 101 LLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKF 160
             VVV G    ++ +         + V+  +    +P  L+  R G      +   +   
Sbjct: 90  KFVVVGGPDPTSQPQ----IYQDADAVIVGEGELTIPMWLDAWRDGNPKGQFESPHKPDV 145

Query: 161 ERLSIVDGGYNRKRGVTAF-LTIQEGCDKFCTFC-VVPYTRGIEISRSLSQVVDEARKLI 218
                               +    GC   C FC ++         ++  Q + E +KL 
Sbjct: 146 TTTPTPRFDLVDFNDYLHVGVQSSRGCPYNCEFCDIIELFGRRPRVKTPDQFLAELQKLY 205

Query: 219 DNGVC-EITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM---- 273
           D G    +     N          G +     LL +L +        +  S    +    
Sbjct: 206 DLGYRGWVDFTDDNFI--------GNRKLIKPLLVALKQWNEDHNYPFVFSTEASINLAD 257

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR-PDIAIS 332
              L++   D+     Y+ L ++S  +  L    +R        IIDR+R++    I+++
Sbjct: 258 DKELLELMRDVQ--FRYVFLGIESPDEETLIHTQKRINTVHP--IIDRVRTIYDHGISVA 313

Query: 333 SDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLL 392
           +  I+GF  +        +  + + G   +     S    T       Q+   +  ER L
Sbjct: 314 AGLIIGFDTDKPGTDGPMIRFIQESGITLSMVGLLSALPNT-------QLTRRLAKERRL 366

Query: 393 C 393
            
Sbjct: 367 I 367


>gi|225376762|ref|ZP_03753983.1| hypothetical protein ROSEINA2194_02404 [Roseburia inulinivorans DSM
           16841]
 gi|225211388|gb|EEG93742.1| hypothetical protein ROSEINA2194_02404 [Roseburia inulinivorans DSM
           16841]
          Length = 584

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 53/289 (18%), Positives = 96/289 (33%), Gaps = 29/289 (10%)

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVV---GPQTYYRLPEL- 139
           +  +  L     K   ++ + V G     E E  L   P V  V+   G +T+ +L +  
Sbjct: 68  MDYVEELITEYHKLCPEVPIWVGGPEVSYEVETFLAEHPQVTGVMIGEGERTFQQLCKYY 127

Query: 140 ------LERAR--------FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEG 185
                 LE  R         GK V        +  +     D   N +  +  + +   G
Sbjct: 128 VNQTGSLEEIRGIAFRDQDSGKTVFTPAQEPMNMSDIPFCYDHIENFENRIIYYES-SRG 186

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C   C++C+          R +  V  E    I+  V ++  + +  N         E  
Sbjct: 187 CPFNCSYCL-SSIDKKLRFRDIELVKKELAFFIEKKVPQVKFVDRTFNCRH--DHAMEIW 243

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
            F           G+    +  S      + L   H     L+  L + VQS ++  ++ 
Sbjct: 244 RFVKEHD-----NGITNFHFEISADLLNEEELALIHDMRPGLI-QLEIGVQSTNEITIRE 297

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           ++R       + I+ +I+    +I    D I G P E    F  + D +
Sbjct: 298 IHRTMKLELLKDIVRKIQGGE-NIHEHLDLIAGLPYEDYATFAKSFDEI 345


>gi|218895922|ref|YP_002444333.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Bacillus cereus G9842]
 gi|228906618|ref|ZP_04070493.1| Oxygen-independent coproporphyrinogen III oxidase 2 [Bacillus
           thuringiensis IBL 200]
 gi|228963965|ref|ZP_04125096.1| Oxygen-independent coproporphyrinogen III oxidase 2 [Bacillus
           thuringiensis serovar sotto str. T04001]
 gi|218544190|gb|ACK96584.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Bacillus cereus G9842]
 gi|228795695|gb|EEM43171.1| Oxygen-independent coproporphyrinogen III oxidase 2 [Bacillus
           thuringiensis serovar sotto str. T04001]
 gi|228853001|gb|EEM97780.1| Oxygen-independent coproporphyrinogen III oxidase 2 [Bacillus
           thuringiensis IBL 200]
          Length = 495

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 48/245 (19%), Positives = 80/245 (32%), Gaps = 9/245 (3%)

Query: 129 GPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
           G        EL E     +  ++    + D   +L++V   Y  K  V+ ++ I   C  
Sbjct: 126 GMSKEEAHQELRESYLIHEEKIELLQRIVD--CQLAVVPDLYRLKEEVSIYIGIPF-CPT 182

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT-- 246
            C +C  P         S+   +      +      +   G  V      G      T  
Sbjct: 183 KCAYCTFPAYAINGRQGSVDSFLGGLHYEVREIGKFLKEKGVKVTTIYYGGGTPTSITAE 242

Query: 247 -FSDLLYSLSEIKGLVR--LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
               L   + E    V+     T    R  +    K        +  + +  QS     L
Sbjct: 243 EMDMLYEEMYEAFPDVKNVREVTVEAGRPDTITPAKLEVLNKWNIDRISINPQSYHQETL 302

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           K++ R HT  E  +     R +  +  I+ D I+G PGE  D F+ T+D  +K+      
Sbjct: 303 KAIGRHHTVEETIEKYHLAREMGMN-NINMDLIIGLPGEGLDIFKHTLDETEKLMPESLT 361

Query: 364 SFKYS 368
               S
Sbjct: 362 VHTLS 366


>gi|218780477|ref|YP_002431795.1| hypothetical protein Dalk_2634 [Desulfatibacillum alkenivorans
           AK-01]
 gi|218761861|gb|ACL04327.1| conserved hypothetical protein [Desulfatibacillum alkenivorans
           AK-01]
          Length = 310

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 27/138 (19%), Positives = 49/138 (35%), Gaps = 6/138 (4%)

Query: 246 TFSDLLYSLSEIKGLVRLRYT--TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
               L      +  +V L          D    L++      ++  ++   +QS  D+ L
Sbjct: 103 RLEALYREALSVPDVVGLCIGTRPDCVDDDVLALLEKLAADHMI--WVEYGLQSSCDKTL 160

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           + +NR H A  + + + +      +I   +  I+G PGET +D   T   +  +      
Sbjct: 161 RIINRGHDAACFAETVKKTAGR--NILTCAHVILGLPGETREDMLETARFIGALPVDGVK 218

Query: 364 SFKYSPRLGTPGSNMLEQ 381
                   GT    M EQ
Sbjct: 219 IHLLYVIRGTALHRMYEQ 236


>gi|110597934|ref|ZP_01386216.1| Cobalamin B12-binding:Radical SAM [Chlorobium ferrooxidans DSM
           13031]
 gi|110340511|gb|EAT58997.1| Cobalamin B12-binding:Radical SAM [Chlorobium ferrooxidans DSM
           13031]
          Length = 491

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 56/329 (17%), Positives = 113/329 (34%), Gaps = 46/329 (13%)

Query: 95  IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT---------------YYRLPEL 139
            +    +++V+ G  A    E+ILRR PI  ++ G                  + R+P L
Sbjct: 98  KRRNPRVIIVLGGIHATLFAEDILRRYPIDYIIRGEGEKTLIPLLSAIRDGTGFERVPGL 157

Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNR---KRGVTAFLTIQEGCDKFCTFCVVP 196
           + +   G  + +    +    E   +    Y+R   K+  +  +    GC   C FC VP
Sbjct: 158 VIKTASGNIIQNQIAELLTSQELDDLPLPLYDRLAEKQYRSLTIESSRGCFGNCAFCAVP 217

Query: 197 YTRGIEISRSLSQVVDEAR----KLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLY 252
           + +      S  + VD+                T++     +        +      +  
Sbjct: 218 F-KKSWRPMSPERFVDKIELLESARAKTLYRYFTIVDDCFTS--------DNARAIAISK 268

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
            +S+     +  Y       +++ L++A       +    +  +S     L  + +  + 
Sbjct: 269 IISDRSLDFQATYDARVTDLLNEELLEAIAPYTKGV---LVGAESFLPDTLLRIGKNISP 325

Query: 313 YEYRQIIDRIRSVRPDIAISSD----FIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
                 I++   +     I+ D    FI+GFP ET  D R  +  +  +           
Sbjct: 326 ES----IEKCAKLVHKYGIAKDSVFSFIIGFPWETKQDIRENISRIAHLSLTWGIQIYLQ 381

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKK 397
             L TPGS +  +      ++RLL ++  
Sbjct: 382 WHLVTPGSRLWNKA----ISDRLLKIEDI 406


>gi|75759702|ref|ZP_00739784.1| Coproporphyrinogen oxidase (NAD) [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|228899546|ref|ZP_04063802.1| Oxygen-independent coproporphyrinogen III oxidase 2 [Bacillus
           thuringiensis IBL 4222]
 gi|74492811|gb|EAO55945.1| Coproporphyrinogen oxidase (NAD) [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|228860136|gb|EEN04540.1| Oxygen-independent coproporphyrinogen III oxidase 2 [Bacillus
           thuringiensis IBL 4222]
          Length = 495

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 48/245 (19%), Positives = 80/245 (32%), Gaps = 9/245 (3%)

Query: 129 GPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
           G        EL E     +  ++    + D   +L++V   Y  K  V+ ++ I   C  
Sbjct: 126 GMSKEEAHQELRESYLIHEEKIELLQRIVD--CQLAVVPDLYRLKEEVSIYIGIPF-CPT 182

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT-- 246
            C +C  P         S+   +      +      +   G  V      G      T  
Sbjct: 183 KCAYCTFPAYAINGRQGSVDSFLGGLHYEVREIGKFLKEKGVKVTTIYYGGGTPTSITAE 242

Query: 247 -FSDLLYSLSEIKGLVR--LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
               L   + E    V+     T    R  +    K        +  + +  QS     L
Sbjct: 243 EMDMLYEEMYEAFPDVKNVREVTVEAGRPDTITPAKLEVLNKWNIDRISINPQSYHQETL 302

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           K++ R HT  E  +     R +  +  I+ D I+G PGE  D F+ T+D  +K+      
Sbjct: 303 KAIGRHHTVEETIEKYHLAREMGMN-NINMDLIIGLPGEGLDIFKHTLDETEKLMPESLT 361

Query: 364 SFKYS 368
               S
Sbjct: 362 VHTLS 366


>gi|240139000|ref|YP_002963475.1| hypothetical protein MexAM1_META1p2416 [Methylobacterium extorquens
           AM1]
 gi|240008972|gb|ACS40198.1| conserved hypothetical protein, radical SAM domain protein
           [Methylobacterium extorquens AM1]
          Length = 437

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 28/176 (15%), Positives = 67/176 (38%), Gaps = 14/176 (7%)

Query: 184 EGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
            GC   C+FC        +  R++  +  E   +  + V    L+          GL+  
Sbjct: 201 RGCPFTCSFCEWGTMESPKRVRAVDHLTQEFEAIAGHDVYAALLVD--------AGLNLN 252

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTT-SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
           +  F +L  +  E     R       +P  +    +     +     Y+ + +QS  + +
Sbjct: 253 RNAFLNLRRAAEESGFFERHGLICEVYPAAVRQEHLDFLATVRNA--YVGIGLQSFDNAV 310

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           L  ++R +    + +   ++ +V    +++ + I+G PG+  + FR   +   ++ 
Sbjct: 311 LAHVDRTYDERRFDETFAKLDAV---ASLAVEIILGLPGDNPETFRRNFERARRLP 363


>gi|224024823|ref|ZP_03643189.1| hypothetical protein BACCOPRO_01554 [Bacteroides coprophilus DSM
           18228]
 gi|224018054|gb|EEF76057.1| hypothetical protein BACCOPRO_01554 [Bacteroides coprophilus DSM
           18228]
          Length = 491

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 48/292 (16%), Positives = 93/292 (31%), Gaps = 34/292 (11%)

Query: 107 GCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIV 166
            CV + EGEE++ +   V     P  +  +  L    + G    +    V +        
Sbjct: 57  SCVFRGEGEEVVPQWLRV--WNKPDAWEEITGLCYLDKDGNYHDNGLARVANFQSLTPPE 114

Query: 167 DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEIT 226
                        L    GC   C FC V        S  +  + +  + + D+G+  I 
Sbjct: 115 CSKLFNWSKPFVQLETTRGCFNTCAFC-VSGGEKPVRSLPVETIRERIQTIHDHGIRNIR 173

Query: 227 LLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV 286
           +L +  N                LL    E   +    +   HP  +++ L  A   +  
Sbjct: 174 VLDRTFNY--------NNRHAQALLNIFCEFPDI--RFHLEIHPALLTEELKTALAKMPE 223

Query: 287 LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDD 346
            + +L   +QS  + +L    R     +    +  + S+ P++   +D I G P      
Sbjct: 224 GLLHLEAGIQSLREPVLAVSKRMGKLKDALSGLRFLCSL-PNMETHADLIAGLP------ 276

Query: 347 FRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM----LEQVDENVKAERLLCL 394
               +  +++I +    +       G P   +    L+ +       R   L
Sbjct: 277 ----LYRLEEI-FEDVRT-----LAGYPAGEIQLESLKLLPGTEMRRRAEEL 318


>gi|169826869|ref|YP_001697027.1| Mg-protoporphyrin IX monomethyl ester oxidative cyclase
           [Lysinibacillus sphaericus C3-41]
 gi|168991357|gb|ACA38897.1| Mg-protoporphyrin IX monomethyl ester oxidative cyclase
           [Lysinibacillus sphaericus C3-41]
          Length = 579

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 51/293 (17%), Positives = 97/293 (33%), Gaps = 28/293 (9%)

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL--- 140
           +    ++         ++ +++ G     +    LRR P V+ +V  +      +LL   
Sbjct: 67  IEETIHVIKMLKTVCPNVKILLGGPEVSYDSHHWLRRIPEVDFIVMGEGEISFKQLLRYL 126

Query: 141 ------ERA------RFGKRVVDTDYSVEDKFERLSIVDGGYNRKR--GVTAFLTIQEGC 186
                 E          GK  +       D  E  S      +         ++    GC
Sbjct: 127 HGEILLEEVPGICYLEDGKVKIHAQPPKIDLRELASPFRFEEDLPHLGKRIQYIETSRGC 186

Query: 187 DKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT 246
              C FC+     G     +  ++ ++ R L+DNG   I  + +  N  R   ++  +  
Sbjct: 187 PFSCQFCLSSIEVG-VRYFNREKIKEDIRFLMDNGARTIKFVDRTFNISRSYAMEMFQFL 245

Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL-DVLMPYLHLPVQSGSDRILKS 305
             +         G+V     T+    M   +I+   D     +    + VQS +D     
Sbjct: 246 IDEHK------PGVVFQFEITADI--MRPEVIQFLNDNAPRGLFRFEIGVQSTNDLTNTL 297

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           + RR    + ++ +  ++     I    D I G P E    FR T + V  + 
Sbjct: 298 VQRRQNFEKLKRTVTMVKEG-GKIDQHLDLIAGLPEEDYASFRQTFNDVFAMR 349


>gi|149918002|ref|ZP_01906496.1| putative radical SAM domain protein [Plesiocystis pacifica SIR-1]
 gi|149821268|gb|EDM80672.1| putative radical SAM domain protein [Plesiocystis pacifica SIR-1]
          Length = 732

 Score = 64.2 bits (155), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 62/378 (16%), Positives = 122/378 (32%), Gaps = 54/378 (14%)

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           L ++R     ++ E       +     +   E+ +  +    V+      +    L++  
Sbjct: 251 LVQLRRKARRKVLEHPRARTAIRLPSFEQVREDPVLYAHASRVLHQEANPHNGRVLVQGH 310

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT--------AFLTI------QEGCDKF 189
              +  ++         E  ++ +  Y R+            A+  I        GC   
Sbjct: 311 GDREVWINPPPVPLSTEEMDAVYELPYQRRPHPRHDDAGKVPAYEMIKTSVMLMRGCFGG 370

Query: 190 CTFCVVPYTRGIEI-SRSLSQVVDEARKLIDN--GVCEIT--LLGQNVNAWR-------- 236
           C+FC +    G  I SRS   V+ E  ++ D   G   +   L G   N WR        
Sbjct: 371 CSFCSITEHEGRIIQSRSPDSVLREIEQIRDTVPGFTGVISDLGGPTANMWRLGCKSPTI 430

Query: 237 --------------GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHG 282
                          + L+ +      L      + G+ ++   +    D++    +   
Sbjct: 431 EAACRRPSCVYPGICENLNTDHSDLIALYRKARALPGVKKILVASGLRYDLAVESPEYVR 490

Query: 283 DLDV--LMPYLHLPVQSGSDRILKSMNRR--HTAYEYRQIIDRI-RSVRPDIAISSDFIV 337
           +L    +  YL +  +  ++  L  M +    T   ++ + DR  +       +   FI 
Sbjct: 491 ELARHHVGGYLKIAPEHVAEGPLSKMMKPGVGTYERFKTLFDRYSKQAGKRQYLIPYFIA 550

Query: 338 GFPGETDDDFRATMDLVDKIGY--AQAFSFKYSPRLGTPGSNM-----LEQVDENVKAER 390
             PG TD+D       + + G+   Q  +F  SP              L++V     AER
Sbjct: 551 AHPGTTDEDMLELALWLKQNGFKPDQVQAFLPSPMATASAMYHSGRNPLKKVSRADSAER 610

Query: 391 LLC-LQKKLREQQVSFND 407
           +      K+R    +F  
Sbjct: 611 VAVPRSAKVRRLHKAFLR 628


>gi|17229515|ref|NP_486063.1| hypothetical protein all2023 [Nostoc sp. PCC 7120]
 gi|17131114|dbj|BAB73722.1| all2023 [Nostoc sp. PCC 7120]
          Length = 676

 Score = 64.2 bits (155), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 40/262 (15%), Positives = 89/262 (33%), Gaps = 35/262 (13%)

Query: 127 VVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGC 186
           V+ P         +   R   + +D     +      ++     +        +    GC
Sbjct: 220 VISPSHRTSTKISIAAPRASVQNLDQVPIPDYDDYFQTLHASTLSPYIQPGLLIETSRGC 279

Query: 187 ----DKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLD 241
                  CTFC +  +     S+S  +V+ E  +L +  G+ +  ++             
Sbjct: 280 WWGQKHHCTFCGLNGSGINYRSKSPDRVLKEFTQLCERYGLRKFQVV----------DNI 329

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
            +    + ++  L+   G            ++    ++      V    +   ++S  + 
Sbjct: 330 LDMNHMNTVIPVLAA--GDEAYNIFYETKANLRWEHLQQLAQAGVRC--IQPGIESMHNS 385

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV------- 354
           ILK MN+ +TA+   Q++   R +   I +  + +  FPGE+D+ +   M+ +       
Sbjct: 386 ILKLMNKGNTAWMNVQLLKWAREL--GIIVFWNILADFPGESDEWYVEMMEWLPLIAHLQ 443

Query: 355 -----DKIGYAQAFSFKYSPRL 371
                 +I Y +     Y  R 
Sbjct: 444 PPSGASEIRYDR--FSPYYERP 463


>gi|226952724|ref|ZP_03823188.1| lipoyl synthase [Acinetobacter sp. ATCC 27244]
 gi|226836515|gb|EEH68898.1| lipoyl synthase [Acinetobacter sp. ATCC 27244]
          Length = 337

 Score = 64.2 bits (155), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 35/208 (16%), Positives = 65/208 (31%), Gaps = 12/208 (5%)

Query: 161 ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN 220
           E  +  +       G   F+ + + C + C FC V    G   +    +    A  + + 
Sbjct: 66  EEAACPNLPECFGGGTATFMIMGDICTRRCPFCDV--AHGRPNALDPDEPRHMAETISNL 123

Query: 221 GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKA 280
           G+    +   +    R   LDG    F D +     +     L       R   D  ++ 
Sbjct: 124 GLKYAVITSVD----RDDLLDGGAQHFVDCIKEARALSPKTLLEILVPDFRGRMDIALRI 179

Query: 281 HGDLDVLMPYLHLPVQSGSDRIL-KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGF 339
             +     P         +   L K+M           ++   +   PDI      +VG 
Sbjct: 180 MTE----CPPDVFNHNIETVPRLYKAMRPGSDYQHSLNLLKMFKEYCPDIPTKCGLMVGI 235

Query: 340 PGETDDDFRATMDLVDKIGYAQAFSFKY 367
            GET+++  A +D +           +Y
Sbjct: 236 -GETEEEVIALLDDLRAHDVDYVTIGQY 262


>gi|327482291|gb|AEA85601.1| conserved hypothetical protein [Pseudomonas stutzeri DSM 4166]
          Length = 759

 Score = 64.2 bits (155), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 38/231 (16%), Positives = 79/231 (34%), Gaps = 31/231 (13%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLID-NGVCEIT--LLGQNVNAW 235
           + I  GC   CTFC +    G  I SRS   ++ E  ++ +  G   +   L G   N +
Sbjct: 379 VNIMRGCFGGCTFCSITEHEGRIIQSRSHESILHEIEEMKNVPGFTGVVSDLGGPTANMY 438

Query: 236 R----------------------GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
           R                       + L+ +  +  +L      + G+ ++   +    D+
Sbjct: 439 RLACKSHEIEKHCRKPSCVFPGICENLNTDHSSLIELYRKARALPGVKKILIASGLRYDL 498

Query: 274 SDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRRH--TAYEYRQIIDRI-RSVRPD 328
           +    +   +L    +  YL +  +      L  M +    T   ++++ ++  +    +
Sbjct: 499 AVESPEYVKELVTHHVGGYLKIAPEHTERGPLDKMMKPGIGTYDRFKRMFEKYSKEAGKE 558

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
             +   FI   PG TD+D       +   G+       + P      + M 
Sbjct: 559 QYLIPYFIAAHPGTTDEDMLNLALWLKANGFRADQVQAFYPSPMATATAMY 609


>gi|210633852|ref|ZP_03297867.1| hypothetical protein COLSTE_01784 [Collinsella stercoris DSM 13279]
 gi|210159021|gb|EEA89992.1| hypothetical protein COLSTE_01784 [Collinsella stercoris DSM 13279]
          Length = 478

 Score = 64.2 bits (155), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 41/214 (19%), Positives = 69/214 (32%), Gaps = 27/214 (12%)

Query: 186 CDKFCTFCVVPYTRGIEISRSL------SQVVDEAR---KLIDNGVCEITLLGQNVNAWR 236
           C   C +C          SR+L        +          +D       L         
Sbjct: 16  CRAKCLYC-------DFDSRALTGCALEDAIGAYCEGLSAQVDAHGNAGELSEVETVYVG 68

Query: 237 GKGLDGEKCTFSD-LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPV 295
           G    G      D L+  +  ++        T      S  L  A       +  + L V
Sbjct: 69  G----GTPSLLGDRLVGLVDRVRAYCEPVEFTCEANPESFTLDLAQALRAAGVTRISLGV 124

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
           QS +   LK++ R H+A +    I + ++     + S D + G PG+T D F  T+  + 
Sbjct: 125 QSLNASELKAIGRVHSAEQAMFAIAQAKAA--GFSTSCDVMCGLPGQTLDTFAETLRSLV 182

Query: 356 KIGYAQAFSFKYSPRLGTPGSNMLE----QVDEN 385
            +       +      GTP + M E    +V + 
Sbjct: 183 TLNPDHVSVYPLQLEDGTPLARMEEAGETEVPDE 216


>gi|52549142|gb|AAU82991.1| Mg-protoporphyrin IX monomethyl ester oxidative cyclase-related
           [uncultured archaeon GZfos1D1]
          Length = 466

 Score = 64.2 bits (155), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 53/321 (16%), Positives = 110/321 (34%), Gaps = 39/321 (12%)

Query: 79  KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPE 138
               FL  + N+ +   +   ++ VV  G  A     EILR+ P+V+ V+  ++   L  
Sbjct: 100 MEDCFLSELYNIAHIVKEYDENIYVVTGGVSATTRDSEILRK-PVVDFVIMGESETPLLT 158

Query: 139 L---LERARFGKRVVDTDYSVEDKF-----------ERLSIVDGGYNRKRGVTAF----- 179
           L   L +    +++    +  +D+            E L   D        + A      
Sbjct: 159 LSNALIQNEDFEKIRGISFMKDDRIVRTDNQSFIDLETLPFPDRDSYPLSRLYALNGGID 218

Query: 180 -LTIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG 237
            +    GC   C+FC  P     +  +R    +V+E   L D G   + +   N    + 
Sbjct: 219 LVYASRGCPFNCSFCNAPAFWKRQWRAREPKDIVEELSILGDLGAKIVHIYDLNFGINKK 278

Query: 238 KGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQS 297
              +  K    + L  + + +             D +   +K     D         +++
Sbjct: 279 WVKNICKEIRREKLDIIWDCE---------LALIDFNRSFLKTL--YDGNCRGAFCGIEA 327

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETD----DDFRATMDL 353
            S  +L S+N+ + + +  + ++  +     I +   ++ G P +         R    L
Sbjct: 328 VSQSVLDSVNKSYKSQDLVKYLNNAKDA--GIHVDGGYVFGLPEDNLSGMMTMTRLACRL 385

Query: 354 VDKIGYAQAFSFKYSPRLGTP 374
           +++        F + P  GT 
Sbjct: 386 LEEDLVETPAPFLFVPFKGTE 406


>gi|86740568|ref|YP_480968.1| radical SAM family protein [Frankia sp. CcI3]
 gi|86567430|gb|ABD11239.1| Radical SAM [Frankia sp. CcI3]
          Length = 486

 Score = 64.2 bits (155), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 32/184 (17%), Positives = 77/184 (41%), Gaps = 19/184 (10%)

Query: 175 GVTAFLTIQEGC----DKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQ 230
              A L    GC       CTFC +  +     S++  ++  E R L         ++  
Sbjct: 259 RPMAVLETSRGCWWGEVHQCTFCGLNGSNINFRSKAPERIAHEVRDLASRHRVLDVVMVD 318

Query: 231 NVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY 290
           N+          +      ++  L+ +   +R+ Y      +M+   +    D +VL  +
Sbjct: 319 NI---------LDMGYIDKVMPELAALDCDLRIHYEI--KSNMTREQLGRLRDANVL--F 365

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
           +   ++S S  +L+ M +  ++    +++     +   ++++ + + GFPGETD+D+++ 
Sbjct: 366 VQPGIESLSSHVLRLMEKGVSSAHNVRMLRDGMDL--GLSVTWNILYGFPGETDEDYQSL 423

Query: 351 MDLV 354
           +  +
Sbjct: 424 LRKM 427


>gi|42780040|ref|NP_977287.1| coproporphyrinogen III oxidase [Bacillus cereus ATCC 10987]
 gi|222094624|ref|YP_002528684.1| coproporphyrinogen iii oxidase [Bacillus cereus Q1]
 gi|229199879|ref|ZP_04326468.1| Oxygen-independent coproporphyrinogen III oxidase 2 [Bacillus
           cereus m1293]
 gi|42735958|gb|AAS39895.1| oxygen-independent coproporphyrinogen III oxidase, putative
           [Bacillus cereus ATCC 10987]
 gi|221238682|gb|ACM11392.1| coproporphyrinogen oxidase, anaerobic [Bacillus cereus Q1]
 gi|228583598|gb|EEK41827.1| Oxygen-independent coproporphyrinogen III oxidase 2 [Bacillus
           cereus m1293]
          Length = 496

 Score = 64.2 bits (155), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 48/245 (19%), Positives = 80/245 (32%), Gaps = 9/245 (3%)

Query: 129 GPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
           G        EL E     +  ++    + D   +L++V   Y  K  V+ ++ I   C  
Sbjct: 127 GMSKEEAHQELRESYLIHEEKIELLQRIVD--CQLAVVPDLYRLKEEVSIYIGIPF-CPT 183

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT-- 246
            C +C  P         S+   +      +      +   G  V      G      T  
Sbjct: 184 KCAYCTFPAYAINGRQGSVDSFLGGLHYEVREIGKFLKEKGVKVTTIYYGGGTPTSITAE 243

Query: 247 -FSDLLYSLSEIKGLVR--LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
               L   + E    V+     T    R  +    K        +  + +  QS     L
Sbjct: 244 EMDMLYEEMYEAFPDVKNVREVTVEAGRPDTITPAKLEVLNKWNIDRISINPQSYHQETL 303

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           K++ R HT  E  +     R +  +  I+ D I+G PGE  D F+ T+D  +K+      
Sbjct: 304 KAIGRHHTVEETIEKYHLAREMGMN-NINMDLIIGLPGEGLDIFKHTLDETEKLMPESLT 362

Query: 364 SFKYS 368
               S
Sbjct: 363 VHTLS 367


>gi|237722277|ref|ZP_04552758.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|293373527|ref|ZP_06619879.1| radical SAM domain protein [Bacteroides ovatus SD CMC 3f]
 gi|299146310|ref|ZP_07039378.1| radical SAM domain protein [Bacteroides sp. 3_1_23]
 gi|229448087|gb|EEO53878.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|292631491|gb|EFF50117.1| radical SAM domain protein [Bacteroides ovatus SD CMC 3f]
 gi|298516801|gb|EFI40682.1| radical SAM domain protein [Bacteroides sp. 3_1_23]
          Length = 628

 Score = 64.2 bits (155), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 49/271 (18%), Positives = 95/271 (35%), Gaps = 44/271 (16%)

Query: 151 DTDYSVEDKFERLSIVDGGYNR---KRGVTAFLTIQEGCDKFCTFCVVPYTRGIE-ISRS 206
           D D+S +  + RL        R      +   + I  GC   C FC +   +G   +SRS
Sbjct: 287 DLDHSFDLPYTRLPHPKYKGKRIPAYDMIKFSINIHRGCFGGCAFCTISAHQGKFIVSRS 346

Query: 207 LSQVVDEARKLI---DNGVCEITLLGQNVNAWRGKGLDGEKCT----------------- 246
              ++ E +++I   D       L G + N ++ KG D   C                  
Sbjct: 347 KESILKEVKEVIQLPDFKGYLSDLGGPSANMYQMKGKDEAICKKCKRPSCIHPKVCPNLN 406

Query: 247 -----FSDLLYSLSEIKGL--------VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLH- 292
                  D+  ++  + G+        VR        +D +     A    ++++ ++  
Sbjct: 407 TDHRPLLDIYRAVDALSGIKKSFIGSGVRYDLLLHQSKDETTNRSTAEYTRELIVNHVSG 466

Query: 293 ---LPVQSGSDRILKSMNRRH--TAYEYRQIIDRI-RSVRPDIAISSDFIVGFPGETDDD 346
              +  +  SDR+L  M +        +++I DRI R       +   FI   PG  ++D
Sbjct: 467 RLKVAPEHTSDRVLSIMRKPSFEQFETFKKIFDRINREENLRQQLIPYFISSHPGCNEED 526

Query: 347 FRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
                 +  ++ +       ++P   T  + 
Sbjct: 527 MAELAVITKRLDFHLEQVQDFTPTPMTVATE 557


>gi|39933756|ref|NP_946032.1| hypothetical protein RPA0679 [Rhodopseudomonas palustris CGA009]
 gi|47606229|sp|P61405|Y679_RHOPA RecName: Full=UPF0313 protein RPA0679
 gi|39647603|emb|CAE26123.1| Protein of unknown function UPF0004:Elongator protein 3/MiaB/NifB
           [Rhodopseudomonas palustris CGA009]
          Length = 677

 Score = 64.2 bits (155), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 60/345 (17%), Positives = 108/345 (31%), Gaps = 49/345 (14%)

Query: 72  IREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ 131
            R      +      +        +  GD+++ +  C    + +E   R+  V       
Sbjct: 224 FRRVPENTIELHADDLDAADEGARQVRGDVVIRLPSCEQVEQDKEAYARASRVLHRESNP 283

Query: 132 TYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT-------------A 178
              R   L++R       ++         E  S+ D  Y R    +              
Sbjct: 284 GNARP--LVQRHGDRDLWLNPPPIPLTTEEMDSVYDLPYARAPHPSYGNAKIPAWDMIKT 341

Query: 179 FLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDNGVCEITLL----GQNVN 233
            +TI  GC   CTFC +    G  I SRS + ++ E  K+ D       ++    G   N
Sbjct: 342 SVTIMRGCFGGCTFCSITEHEGRIIQSRSEASILQEIEKIRDKTPGFTGVISDIGGPTAN 401

Query: 234 AWRGKGLDGE----------------------KCTFSDLLYSLSEIKGLVRLRYTTSHPR 271
            +R    D                              L   + E+KG+ R+   +    
Sbjct: 402 MYRMACKDSNIESSCRKPSCVFPDICPNLNTSHDDLIRLYRKVREVKGIKRVMVASGVRY 461

Query: 272 DMSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRR--HTAYEYRQIID-RIRSVR 326
           D++        +L    +  YL +  +      L  M +    T + ++Q+ +   +   
Sbjct: 462 DLAVKSPAYIKELVSHHVGGYLKIAPEHTERGPLDKMMKPGIGTYHRFKQMFEAAAKQAG 521

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGY--AQAFSFKYSP 369
               +   FI   PG TD+D       + +  Y   Q  +F  SP
Sbjct: 522 KQYYLIPYFIAAHPGTTDEDMMNLALWLKRNRYRADQVQTFLPSP 566


>gi|294626665|ref|ZP_06705262.1| Mg-protoporphyrin IX monomethyl ester oxidative cyclase
           [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
 gi|292599085|gb|EFF43225.1| Mg-protoporphyrin IX monomethyl ester oxidative cyclase
           [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
          Length = 496

 Score = 64.2 bits (155), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 45/268 (16%), Positives = 79/268 (29%), Gaps = 22/268 (8%)

Query: 125 NVVVGPQTYYRLPELLERARFGKRVVDTDYS---VEDKFERLSIVDGGYNRKRGVTAFLT 181
           + + G            R   G +  D   S     D  +          R    +  + 
Sbjct: 154 HWLSGVAQIATSQSAAMRIHPGAQPPDARLSGLPAWDLVDMPRYRRFWQQRHGHFSLNMA 213

Query: 182 IQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD 241
              GC   C +C  P        R   ++  E   L  +   +   +  ++  +    ++
Sbjct: 214 ASRGCPFRCNWCAKPIWGNHYKRRGAKEMAAEMIHLKRSYRPDHIWMADDIFGFHIDWVE 273

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
                       LS+  G   + +T     D++     A            +  +SGS R
Sbjct: 274 T-------FAQQLSDADGA--IPFTIQTRADLASE-RMAAALARAGCVEAWIGAESGSQR 323

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
           IL  M +     E     +R+ +    I +     +G+ GE  +D  AT  LV +     
Sbjct: 324 ILDKMTKGTRVGEVIAARERLGTQ--GIRVGFFIQLGYLGEELEDILATRALVTQANPDI 381

Query: 362 AFSFKYSPRLGTPGSNMLEQVDENVKAE 389
                  P  GT          E VK +
Sbjct: 382 VGVSVSYPLPGTKFY-------EEVKNQ 402


>gi|288942741|ref|YP_003444981.1| oxygen-independent coproporphyrinogen III oxidase [Allochromatium
           vinosum DSM 180]
 gi|288898113|gb|ADC63949.1| oxygen-independent coproporphyrinogen III oxidase [Allochromatium
           vinosum DSM 180]
          Length = 395

 Score = 64.2 bits (155), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 42/203 (20%), Positives = 78/203 (38%), Gaps = 7/203 (3%)

Query: 186 CDKFCTFCVV-PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK 244
           C + C +C    +  G E SR     V+  +  +D  + E        + + G G     
Sbjct: 20  CVRKCPYCDFNSHPGGRE-SRPFDAYVERLQLDLDAELREPAARRPIGSIFIGGGTPSLF 78

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAH---GDLDVLMPYLHLPVQSGSDR 301
              + +   L  I+  V L        + +   I A       +  +  L + VQS S  
Sbjct: 79  PGPA-IRRLLDGIRARVELIPDAEITLEANPGTIDAAHFAAYREAGINRLSIGVQSLSTE 137

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
            L+ + R HT  E R+ +   R++  D  ++ D + G PG+T D  RA +D +  +    
Sbjct: 138 QLERLGRIHTPEEAREAVRIARALGFD-NLNLDLMFGLPGQTLDGARADLDALIALEPEH 196

Query: 362 AFSFKYSPRLGTPGSNMLEQVDE 384
              ++ +   GT       ++ +
Sbjct: 197 VSYYQLTVEPGTAFGARPPELPD 219


>gi|226942993|ref|YP_002798066.1| lipoyl synthase [Azotobacter vinelandii DJ]
 gi|259494927|sp|C1DMR1|LIPA_AZOVD RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|226717920|gb|ACO77091.1| lipoic acid synthetase [Azotobacter vinelandii DJ]
          Length = 325

 Score = 64.2 bits (155), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 41/265 (15%), Positives = 86/265 (32%), Gaps = 18/265 (6%)

Query: 109 VAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTD------YSVEDKFER 162
             +  G E + R P+   V+  +   R P+ +         V+        + +    E 
Sbjct: 17  GVKLRGAEKVARIPV--KVIPTEELPRKPDWIRVRMPASPEVERIKQLLRQHKLHSVCEE 74

Query: 163 LSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGV 222
            S  + G     G   F+ + + C + C FC V + R   +     +  + A  + D  +
Sbjct: 75  ASCPNLGECFAGGTATFMIMGDICTRRCPFCDVGHGRPNPL--DPDEPKNLAVAVADLRL 132

Query: 223 CEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHG 282
             + +   +    R    DG    F+D L  +  +    +L       R   +  +    
Sbjct: 133 KYVVITSVD----RDDLRDGGAQHFADCLREIRRLSPGTQLETLVPDYRGRMEIALDITA 188

Query: 283 DLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGE 342
                 P +         R+ K+            +++  +   P +   S  ++G  GE
Sbjct: 189 AEP---PDVFNHNLETVPRLYKASRPGADFEWSLDLLEAFKKRVPAVPTKSGLMLGL-GE 244

Query: 343 TDDDFRATMDLVDKIGYAQAFSFKY 367
           TD++    M  + +         +Y
Sbjct: 245 TDEEVIEVMKRMREHEIDMLTLGQY 269


>gi|317968678|ref|ZP_07970068.1| Fe-S oxidoreductase [Synechococcus sp. CB0205]
          Length = 518

 Score = 64.2 bits (155), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 45/303 (14%), Positives = 90/303 (29%), Gaps = 33/303 (10%)

Query: 79  KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVV-VGPQTYYRLP 137
           +++  L  +R       +   +   V+ G       E++ +R P   VV VG        
Sbjct: 114 ELWRNLRLVRRGLKRARRHHPEAQAVLGGGAVSVFYEQLGKRLPRGTVVSVGEGEPLLEK 173

Query: 138 ELLERARFGKRVVDTDYSVE------------------DKFERLSIVDGGYNRKRGVTAF 179
            L   +  G+R      +                    D    +      Y         
Sbjct: 174 LLRGESLEGERCFLAGEAPRPGLIHEQPSGMEKTACDYDYIASIWPQLDWYLDGGDFYVG 233

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISR-SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK 238
           +  + GC   C +CV     G  +    + +V+ E  +L   GV             R  
Sbjct: 234 VQTKRGCPHNCCYCVYTVVEGKAVRVNPVEEVIAEMHQLYRRGVRGFWFTDAQFIPARRY 293

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRY-TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQS 297
             D +     +LL ++ + +G   +R+       ++   L +   D    M Y  + + S
Sbjct: 294 IDDAK-----ELLRAV-KAQGWTDIRWAAYIRADNLDAELAQLMVDTG--MDYFEIGITS 345

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPG--ETDDDFRATMDLVD 355
           GS  +++ M   +      +    +                F    E  +  R T+    
Sbjct: 346 GSQELVRKMRMGYNLRTVLENCRLLAEA--GFREHVSVNYSFNVIDERPETIRQTVAYHR 403

Query: 356 KIG 358
           ++ 
Sbjct: 404 ELE 406


>gi|288819168|ref|YP_003433516.1| biotin synthase-related protein [Hydrogenobacter thermophilus TK-6]
 gi|288788568|dbj|BAI70315.1| biotin synthase-related protein [Hydrogenobacter thermophilus TK-6]
 gi|308752750|gb|ADO46233.1| Radical SAM domain protein [Hydrogenobacter thermophilus TK-6]
          Length = 371

 Score = 64.2 bits (155), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 52/269 (19%), Positives = 99/269 (36%), Gaps = 41/269 (15%)

Query: 185 GCDKFCTFCVVPYTRGIEISR-----------SLSQVVDEARKLIDNGVCEITLLGQNVN 233
           GC   C +C +   R +E S+            L ++++ A+K+   G  E   + Q  +
Sbjct: 54  GCHATCAYCGLQKARDMEYSKKNFIRVEWPTVKLEEILERAKKV---GHVERLCIAQITH 110

Query: 234 AWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHL 293
               +     K     ++  L    G         +    S   ++ +  L      + +
Sbjct: 111 PRAIRDT---KYILERVVREL----GDKIFVSLLINATGTSYEDMEDYKKLG--ADTVTV 161

Query: 294 PVQSGSDRIL-----KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFR 348
            +   +  +      K MN  H    + ++++    V  D       +VG  GET+ +  
Sbjct: 162 AIDCATPEVFEKLRGKPMNSPHKWETFWKVLEWACEVMGDGYAGCHLVVGL-GETEQEMI 220

Query: 349 ATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD------ENVKAERLLCLQKKLREQQ 402
            T+  V  +G A+   F + P  G   S M ++          V+  R L   +  R + 
Sbjct: 221 ETIQKVRDMG-ARTHLFSFWPEEG---SMMEKEKPCPAPQYRRVQLARYLIDNQIARYED 276

Query: 403 VSFNDACVGQIIEVLIEKHGKEKGKLVGR 431
           + FN+   GQ+I+  I+K   E+    GR
Sbjct: 277 MKFNEK--GQVIDFGIDKDTFEELFWSGR 303


>gi|146283964|ref|YP_001174117.1| hypothetical protein PST_3650 [Pseudomonas stutzeri A1501]
 gi|145572169|gb|ABP81275.1| radical SAM domain protein [Pseudomonas stutzeri A1501]
          Length = 729

 Score = 64.2 bits (155), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 38/231 (16%), Positives = 79/231 (34%), Gaps = 31/231 (13%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLID-NGVCEIT--LLGQNVNAW 235
           + I  GC   CTFC +    G  I SRS   ++ E  ++ +  G   +   L G   N +
Sbjct: 349 VNIMRGCFGGCTFCSITEHEGRIIQSRSHESILHEIEEMKNVPGFTGVVSDLGGPTANMY 408

Query: 236 R----------------------GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
           R                       + L+ +  +  +L      + G+ ++   +    D+
Sbjct: 409 RLACKSHEIEKHCRKPSCVFPGICENLNTDHSSLIELYRKARALPGVKKILIASGLRYDL 468

Query: 274 SDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRRH--TAYEYRQIIDRI-RSVRPD 328
           +    +   +L    +  YL +  +      L  M +    T   ++++ ++  +    +
Sbjct: 469 AVESPEYVKELVTHHVGGYLKIAPEHTERGPLDKMMKPGIGTYDRFKRMFEKYSKEAGKE 528

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
             +   FI   PG TD+D       +   G+       + P      + M 
Sbjct: 529 QYLIPYFIAAHPGTTDEDMLNLALWLKANGFRADQVQAFYPSPMATATAMY 579


>gi|126456032|ref|YP_001074076.1| B12-binding/radical SAM domain-containing protein [Burkholderia
           pseudomallei 1106a]
 gi|242311417|ref|ZP_04810434.1| B12-binding/radical SAM domain protein [Burkholderia pseudomallei
           1106b]
 gi|126229800|gb|ABN93213.1| B12-binding/radical SAM domain protein [Burkholderia pseudomallei
           1106a]
 gi|242134656|gb|EES21059.1| B12-binding/radical SAM domain protein [Burkholderia pseudomallei
           1106b]
          Length = 647

 Score = 64.2 bits (155), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 52/312 (16%), Positives = 99/312 (31%), Gaps = 54/312 (17%)

Query: 95  IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF--------- 145
            +   DL V++ G  A     +IL R P  +++V  +    LP +L+             
Sbjct: 98  KRREPDLPVLLGGPHATMLHRQILERFPQFDIIVRYEADEILPAVLDCLEQRTFDVIPGL 157

Query: 146 ----------------GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKF 189
                             +V + D      ++   + D G +  R     +    GC   
Sbjct: 158 SWRATGRGAPLRFTDGKPKVEELDRLPIASYDHYPVDDLGLSMLR-----IEAGRGCPFA 212

Query: 190 CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSD 249
           CTFC        + S  L        +L                +      D        
Sbjct: 213 CTFCSTAGFF--QRSFRLKSAERLVHELDILHRRYRV-------SDFKLDHDMFTVNRHK 263

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
           ++     + G       ++    + + L++   D       L+  V++GS+R+     +R
Sbjct: 264 VMAFCEAVAGRGYRWRASARIDCVDEALLRKMADAG--CVNLYFGVETGSERMQTICRKR 321

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSD--FIVGFPGETDDDFRATMDLVDKIG-----YAQA 362
                  ++++ I +      I +   FI G+P E+  D   T+D++ +         Q 
Sbjct: 322 ----LDLRLVEPILAAADSFGIETTASFITGYPQESGQDQDDTLDMIGRCARRPSCLTQL 377

Query: 363 FSFKYSPRLGTP 374
                 P  GTP
Sbjct: 378 HMLA--PEPGTP 387


>gi|46579843|ref|YP_010651.1| radical SAM domain-containing protein [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|46449259|gb|AAS95910.1| radical SAM domain protein [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|311234152|gb|ADP87006.1| Protein of unknown function DUF2344 [Desulfovibrio vulgaris RCH1]
          Length = 864

 Score = 64.2 bits (155), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 41/234 (17%), Positives = 80/234 (34%), Gaps = 22/234 (9%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGK 238
           L I  GC + C FC    T      RS+  +       +   G  +++ L  +       
Sbjct: 254 LEIGRGCTRGCRFCQAGMTYRPARERSVPNLQALLEDCLARTGYDDVSFLSLSTG----- 308

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
                K  F   +   +E +  V +   +     + D +++    +        L  ++G
Sbjct: 309 DFSALKTLFMQTVDRCAEEQ--VSVSLPSLRVGSIDDDIMRRMAGIRR--TGATLAPEAG 364

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           S R+   +N+  T       + ++        +   F++G P ET +D  A +DL  K+ 
Sbjct: 365 SQRLRDVINKGVTEEGLMLHVRKLFEHGWQ-QVKLYFMLGLPTETYEDLDAIVDLCRKVR 423

Query: 359 ----------YAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQ 402
                        A    + P+  TP      Q+       R+  L+   R ++
Sbjct: 424 DAAGRGVRRLQVTAAVSPFVPKPHTP-FQWEAQISLEEIRARVGYLRDAFRREK 476


>gi|313672043|ref|YP_004050154.1| cobalamin b12-binding domain protein [Calditerrivibrio
           nitroreducens DSM 19672]
 gi|312938799|gb|ADR17991.1| cobalamin B12-binding domain protein [Calditerrivibrio
           nitroreducens DSM 19672]
          Length = 526

 Score = 64.2 bits (155), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 65/332 (19%), Positives = 111/332 (33%), Gaps = 39/332 (11%)

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
           +      +     +    ++ V+ G       E++L R   V+ V+  +       L+E 
Sbjct: 107 YFEEAVEIAKIAKEIDKSMITVMGGNHPTLFPEDVL-RYDCVDFVIRGEGELPFKLLVEN 165

Query: 143 ARFGK------------------RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQE 184
            + GK                  + + TD       +R  I    Y   +G  A     +
Sbjct: 166 IKKGKSLFEVPGLCYKDNGTIEIKKIYTDADCNLNLKREMIQKDSYRYGKGFIAPALTSK 225

Query: 185 GCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK 244
           GC   C FC  P             +  + +KLID G         +   +    LD   
Sbjct: 226 GCPHRCYFCGKPAV--KFRRFETEDIKKDLKKLIDLGF--------DTVDFEDDYLDLTS 275

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304
               D+L  +S     +RL         +    IK   D       ++L +   S+ I K
Sbjct: 276 PQIKDMLKWIS--DKNLRLTAMNGVVPKIDSETIKLVRDAG--FQRINLSLVDISEDIQK 331

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
             N R     + +I+D    ++  I I   FI+G P +T++D   TM  + +        
Sbjct: 332 ETN-RDQFSGFNEILDDF--IKTGIPIEVHFILGLPYQTENDILNTMIYLAEKKVL-LGP 387

Query: 365 FKYSPRLGTPGSN--MLEQVDENVKAERLLCL 394
             Y    G+P     + E  + N+K  R   L
Sbjct: 388 SVYYLSPGSPAFKNFLSENGNFNLKYARSSAL 419


>gi|134284017|ref|ZP_01770712.1| B12-binding/radical SAM domain protein [Burkholderia pseudomallei
           305]
 gi|134244628|gb|EBA44727.1| B12-binding/radical SAM domain protein [Burkholderia pseudomallei
           305]
          Length = 647

 Score = 64.2 bits (155), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 51/310 (16%), Positives = 100/310 (32%), Gaps = 50/310 (16%)

Query: 95  IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF--------- 145
            +   DL V++ G  A     +IL R P  +++V  +    LP +L+             
Sbjct: 98  KRREPDLPVLLGGPHATMLHRQILERFPQFDIIVRYEADEILPAVLDCLEQRTFDVIPGL 157

Query: 146 ----------------GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKF 189
                             +V + D      ++   + D G +  R     +    GC   
Sbjct: 158 SWRATGRGAPLRFTDGKPKVEELDRLPIASYDHYPVDDLGLSMLR-----IEAGRGCPFA 212

Query: 190 CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSD 249
           CTFC        + S  L        +L                +      D        
Sbjct: 213 CTFCSTAGFF--QRSFRLKSAERLVHELDILHRRYRV-------SDFKLDHDMFTVNRHK 263

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
           ++     + G       ++    + + L++   D       L+  V++GS+R+     +R
Sbjct: 264 VMAFCEAVAGRGYRWRASARIDCVDEALLRKMADAG--CVNLYFGVETGSERMQTICRKR 321

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSD--FIVGFPGETDDDFRATMDLV-DKIGYAQAFS-- 364
                  ++++ I +      I +   FI G+P E+  D   T+D++      +   +  
Sbjct: 322 ----LDLRLVEPILAAADSFGIETTASFITGYPQESGQDQDDTLDMIGRCARRSSCLTQL 377

Query: 365 FKYSPRLGTP 374
              +P  GTP
Sbjct: 378 HMLAPEPGTP 387


>gi|298483737|ref|ZP_07001911.1| radical SAM domain protein [Bacteroides sp. D22]
 gi|298270154|gb|EFI11741.1| radical SAM domain protein [Bacteroides sp. D22]
          Length = 618

 Score = 64.2 bits (155), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 46/271 (16%), Positives = 96/271 (35%), Gaps = 44/271 (16%)

Query: 151 DTDYSVEDKFERLSIVDGGYNR---KRGVTAFLTIQEGCDKFCTFCVVPYTRGIE-ISRS 206
           D D S +  + RL        R      +   + I  GC   C FC +   +G   +SRS
Sbjct: 287 DLDRSFDLPYTRLPHPKYKGKRIPAYDMIKFSINIHRGCFGGCAFCTISAHQGKFIVSRS 346

Query: 207 LSQVVDEARKLI---DNGVCEITLLGQNVNAWRGKGLDGEKCT----------------- 246
              ++ E +++I   D       L G + N ++ KG D   C                  
Sbjct: 347 KESILKEVKEVIQLPDFKGYLSDLGGPSANMYQMKGKDEAICKKCKRPSCIHPKVCPNLN 406

Query: 247 -----FSDLLYSLSEIKGLVRLRYTTSHPRDM------SDCLIKAHGDLDV--LMPYLH- 292
                  D+  ++  + G+ +    +    D+       + + ++  +     ++ ++  
Sbjct: 407 TDHRPLLDIYRAVDALPGIKKSFIGSGIRYDLLLHQSKDEAINRSTAEYTRELIVNHVSG 466

Query: 293 ---LPVQSGSDRILKSMNRRH--TAYEYRQIIDRI-RSVRPDIAISSDFIVGFPGETDDD 346
              +  +  SDR+L  M++        +++I DRI R       +   FI   PG  ++D
Sbjct: 467 RLKVAPEHTSDRVLSVMHKPSFEQFETFKRIFDRINREENLRQQLIPYFISSHPGCKEED 526

Query: 347 FRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
                 +  ++ +       ++P   T  + 
Sbjct: 527 MAELAVITKRLDFHLEQVQDFTPTPMTVATE 557


>gi|284048720|ref|YP_003399059.1| Radical SAM domain protein [Acidaminococcus fermentans DSM 20731]
 gi|283952941|gb|ADB47744.1| Radical SAM domain protein [Acidaminococcus fermentans DSM 20731]
          Length = 332

 Score = 64.2 bits (155), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 43/212 (20%), Positives = 73/212 (34%), Gaps = 19/212 (8%)

Query: 185 GCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK 244
           GC   C+FC         IS      +  AR+ ++N +  +     N  A+ G       
Sbjct: 11  GCPHLCSFC-----NQRTISGEGDSSLAGARRQMENLLGWVRPDPANELAFYGGSFTALD 65

Query: 245 CTFSDLLYSLSEI---KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
               + L  L+E    +GL      ++ P  ++  ++         +  + L  QS  DR
Sbjct: 66  PDRQEALLDLAETWRGQGLCGPLRLSTRPDAITPEILDRLRAHQ--VETIELGAQSLDDR 123

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
           +L+   R HTA + R     IR       +    + G PG+       T   V  +    
Sbjct: 124 VLELARRGHTAAQVRTASRLIRQ--GGFRLGLQLMTGLPGQDGPSLEDTKAQVLALHPDL 181

Query: 362 AFSFKYSPRLGT-------PGSNMLEQVDENV 386
              +      GT        G+   + V+E V
Sbjct: 182 VRIYPVLVIEGTLLADQWRQGAYRPQTVEEAV 213


>gi|229042740|ref|ZP_04190479.1| Oxygen-independent coproporphyrinogen III oxidase 2 [Bacillus
           cereus AH676]
 gi|229108477|ref|ZP_04238094.1| Oxygen-independent coproporphyrinogen III oxidase 2 [Bacillus
           cereus Rock1-15]
 gi|229126299|ref|ZP_04255317.1| Oxygen-independent coproporphyrinogen III oxidase 2 [Bacillus
           cereus BDRD-Cer4]
 gi|229143592|ref|ZP_04272016.1| Oxygen-independent coproporphyrinogen III oxidase 2 [Bacillus
           cereus BDRD-ST24]
 gi|296501604|ref|YP_003663304.1| coproporphyrinogen III oxidase [Bacillus thuringiensis BMB171]
 gi|228639849|gb|EEK96255.1| Oxygen-independent coproporphyrinogen III oxidase 2 [Bacillus
           cereus BDRD-ST24]
 gi|228657291|gb|EEL13111.1| Oxygen-independent coproporphyrinogen III oxidase 2 [Bacillus
           cereus BDRD-Cer4]
 gi|228675104|gb|EEL30331.1| Oxygen-independent coproporphyrinogen III oxidase 2 [Bacillus
           cereus Rock1-15]
 gi|228726574|gb|EEL77792.1| Oxygen-independent coproporphyrinogen III oxidase 2 [Bacillus
           cereus AH676]
 gi|296322656|gb|ADH05584.1| coproporphyrinogen III oxidase [Bacillus thuringiensis BMB171]
          Length = 496

 Score = 64.2 bits (155), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 48/245 (19%), Positives = 80/245 (32%), Gaps = 9/245 (3%)

Query: 129 GPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
           G        EL E     +  ++    + D   +L++V   Y  K  V+ ++ I   C  
Sbjct: 127 GMSKEEAHQELRESYLIHEEKIELLQRIVD--CQLAVVPDLYRLKEEVSIYIGIPF-CPT 183

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT-- 246
            C +C  P         S+   +      +      +   G  V      G      T  
Sbjct: 184 KCAYCTFPAYAINGRQGSVDSFLGGLHYEVREIGKFLKEKGVKVTTIYYGGGTPTSITAE 243

Query: 247 -FSDLLYSLSEIKGLVR--LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
               L   + E    V+     T    R  +    K        +  + +  QS     L
Sbjct: 244 EMDMLYEEMYEAFPDVKNVREVTVEAGRPDTITPAKLEVLNKWNIDRISINPQSYHQETL 303

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           K++ R HT  E  +     R +  +  I+ D I+G PGE  D F+ T+D  +K+      
Sbjct: 304 KAIGRHHTVEETIEKYHLAREMGMN-NINMDLIIGLPGEGLDIFKHTLDETEKLMPESLT 362

Query: 364 SFKYS 368
               S
Sbjct: 363 VHTLS 367


>gi|229137689|ref|ZP_04266294.1| Oxygen-independent coproporphyrinogen III oxidase 2 [Bacillus
           cereus BDRD-ST26]
 gi|228645804|gb|EEL02033.1| Oxygen-independent coproporphyrinogen III oxidase 2 [Bacillus
           cereus BDRD-ST26]
          Length = 496

 Score = 64.2 bits (155), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 48/245 (19%), Positives = 80/245 (32%), Gaps = 9/245 (3%)

Query: 129 GPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
           G        EL E     +  ++    + D   +L++V   Y  K  V+ ++ I   C  
Sbjct: 127 GMSKEEAHQELRESYLIHEEKIELLQRIVD--CQLAVVPDLYRLKEEVSIYIGIPF-CPT 183

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT-- 246
            C +C  P         S+   +      +      +   G  V      G      T  
Sbjct: 184 KCAYCTFPAYAINGRQGSVDSFLGGLHYEVREIGKFLKEKGVKVTTIYYGGGTPTSITAE 243

Query: 247 -FSDLLYSLSEIKGLVR--LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
               L   + E    V+     T    R  +    K        +  + +  QS     L
Sbjct: 244 EMDMLYEEMYEAFPDVKNVREVTVEAGRPDTITPAKLEVLNKWNIDRISINPQSYHQETL 303

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           K++ R HT  E  +     R +  +  I+ D I+G PGE  D F+ T+D  +K+      
Sbjct: 304 KAIGRHHTVEETIEKYHLAREMGMN-NINMDLIIGLPGEGLDIFKHTLDETEKLMPESLT 362

Query: 364 SFKYS 368
               S
Sbjct: 363 VHTLS 367


>gi|27377850|ref|NP_769379.1| methyltransferase [Bradyrhizobium japonicum USDA 110]
 gi|27350996|dbj|BAC48004.1| hypothetical methyltransferase [Bradyrhizobium japonicum USDA 110]
          Length = 539

 Score = 64.2 bits (155), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 43/272 (15%), Positives = 89/272 (32%), Gaps = 21/272 (7%)

Query: 119 RRSPIVNVVVGPQTYYRLPELLERARFGKRV-VDTDYSVEDKFERLSIVDGGY-NRKRGV 176
                 +  V  +    + E +     G R  V T    +    R  +        +  +
Sbjct: 114 HIYERADFRVLGEAESVIDEFIAAWEGGARSGVFTAPKFQADVTRTPVPRFDLLKFEDYL 173

Query: 177 TAFLTIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVC-EITLLGQNVNA 234
              +    GC   C FC +    G    +++  Q+  E   L   G    +  +  N   
Sbjct: 174 YIGVQYSRGCPFTCEFCDIIELYGRVPRTKTAEQMFVELETLYRMGYRGHLDFVDDNFI- 232

Query: 235 WRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM----SDCLIKAHGDLDVLMPY 290
                  G K +    L  L+E +      +  S    +       L++  G  +     
Sbjct: 233 -------GNKKSLRLFLPQLAEWQRAHGYPFEFSTEASINLADDPELLEQMGAANFF--G 283

Query: 291 LHLPVQSGSDRILKSMNRR-HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           + + ++S     L +M ++ +T     + I +I +    I +++ FIVGF  E      A
Sbjct: 284 IFVGIESPDPATLVAMRKKQNTRRNIAESIHKIYAA--GILVTAGFIVGFDNEKVSMAEA 341

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
            ++ +++     +          T  +  LE+
Sbjct: 342 MIEFIEEAAIPVSMVGLLYALPNTQLTRRLER 373


>gi|217958474|ref|YP_002337022.1| coproporphyrinogen III oxidase [Bacillus cereus AH187]
 gi|217065628|gb|ACJ79878.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Bacillus cereus AH187]
          Length = 495

 Score = 64.2 bits (155), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 48/245 (19%), Positives = 80/245 (32%), Gaps = 9/245 (3%)

Query: 129 GPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
           G        EL E     +  ++    + D   +L++V   Y  K  V+ ++ I   C  
Sbjct: 126 GMSKEEAHQELRESYLIHEEKIELLQRIVD--CQLAVVPDLYRLKEEVSIYIGIPF-CPT 182

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT-- 246
            C +C  P         S+   +      +      +   G  V      G      T  
Sbjct: 183 KCAYCTFPAYAINGRQGSVDSFLGGLHYEVREIGKFLKEKGVKVTTIYYGGGTPTSITAE 242

Query: 247 -FSDLLYSLSEIKGLVR--LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
               L   + E    V+     T    R  +    K        +  + +  QS     L
Sbjct: 243 EMDMLYEEMYEAFPDVKNVREVTVEAGRPDTITPAKLEVLNKWNIDRISINPQSYHQETL 302

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           K++ R HT  E  +     R +  +  I+ D I+G PGE  D F+ T+D  +K+      
Sbjct: 303 KAIGRHHTVEETIEKYHLAREMGMN-NINMDLIIGLPGEGLDIFKHTLDETEKLMPESLT 361

Query: 364 SFKYS 368
               S
Sbjct: 362 VHTLS 366


>gi|206975725|ref|ZP_03236637.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Bacillus cereus H3081.97]
 gi|206746187|gb|EDZ57582.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Bacillus cereus H3081.97]
          Length = 495

 Score = 64.2 bits (155), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 48/245 (19%), Positives = 80/245 (32%), Gaps = 9/245 (3%)

Query: 129 GPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
           G        EL E     +  ++    + D   +L++V   Y  K  V+ ++ I   C  
Sbjct: 126 GMSKEEAHQELRESYLIHEEKIELLQRIVD--CQLAVVPDLYRLKEEVSIYIGIPF-CPT 182

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT-- 246
            C +C  P         S+   +      +      +   G  V      G      T  
Sbjct: 183 KCAYCTFPAYAINGRQGSVDSFLGGLHYEVREIGKFLKEKGVKVTTIYYGGGTPTSITAE 242

Query: 247 -FSDLLYSLSEIKGLVR--LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
               L   + E    V+     T    R  +    K        +  + +  QS     L
Sbjct: 243 EMDMLYEEMYEAFPDVKNVREVTVEAGRPDTITPAKLEVLNKWNIDRISINPQSYHQETL 302

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           K++ R HT  E  +     R +  +  I+ D I+G PGE  D F+ T+D  +K+      
Sbjct: 303 KAIGRHHTVEETIEKYHLAREMGMN-NINMDLIIGLPGEGLDIFKHTLDETEKLMPESLT 361

Query: 364 SFKYS 368
               S
Sbjct: 362 VHTLS 366


>gi|39997964|ref|NP_953915.1| radical SAM domain-containing protein [Geobacter sulfurreducens
           PCA]
 gi|47606228|sp|P61404|Y2873_GEOSL RecName: Full=UPF0313 protein GSU2873
 gi|39984909|gb|AAR36265.1| radical SAM domain protein [Geobacter sulfurreducens PCA]
 gi|298506905|gb|ADI85628.1| cobalamin-binding radical SAM domain iron-sulfur cluster-binding
           oxidoreductase [Geobacter sulfurreducens KN400]
          Length = 605

 Score = 64.2 bits (155), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 46/286 (16%), Positives = 93/286 (32%), Gaps = 44/286 (15%)

Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSLS 208
           +D+ Y++  +                + A +T   GC   C+FC + + +G  I SRS  
Sbjct: 269 LDSVYALPFQRAPHPSHGEPIPAYEQIRASVTTHRGCFGGCSFCAITHHQGKVIQSRSER 328

Query: 209 QVVDEARKLIDN----------GVCEITLLGQNVNAWRG---------------KGLDGE 243
            V+ E  ++             G     + G +    RG               + L   
Sbjct: 329 SVLAEVERMAAMAWFRGSVSDVGGPTANMYGVHCGNTRGGHACRRESCLYPSPCRYLAVG 388

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL--DVLMPYLHLPVQSGSDR 301
               + LL ++  ++G+  +  ++    D+ +       +L    +   L +  +    R
Sbjct: 389 GERGAALLRAVRGVRGVRNVAVSSGIRYDLMERQPAYFRELVAHHVGGLLKVAPEHMVAR 448

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIA----ISSDFIVGFPGETDDDFRATMDLVDKI 357
           +   M +      + + ++R R     +     I    + G PG T DD       + + 
Sbjct: 449 VTDLMRKPG-KESFDRFLERFRRESARLGKKQYIIPYLMSGHPGCTLDDMVELALFLKRA 507

Query: 358 GYAQAFSFKYSPRLGT-----------PGSNMLEQVDENVKAERLL 392
           G        ++P  GT           P +     V    + +RL 
Sbjct: 508 GLRVEQVQDFTPTPGTLSTCMYHTGLDPFAGAPVHVPRGDREKRLQ 553


>gi|323346584|gb|EGA80871.1| Lip5p [Saccharomyces cerevisiae Lalvin QA23]
          Length = 414

 Score = 63.8 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 87/235 (37%), Gaps = 16/235 (6%)

Query: 167 DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEIT 226
            GG ++ +     + + + C + C FC V   R       +    + A  +   G+  + 
Sbjct: 162 WGGKDKSKATATIMLLGDTCTRGCRFCSVKTNRTPSKPDPME-PENTAEAIKRWGLGYVV 220

Query: 227 LLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV 286
           L   +    R   +DG     ++ +  + + K    L  T S        ++       +
Sbjct: 221 LTTVD----RDDLVDGGANHLAETVRKI-KQKAPNTLVETLSGDFRGDLKMVDIMAQCGL 275

Query: 287 -LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDD 345
            +  +    V+S +  +     RR T  +   +++R ++  P +   +  ++G  GETD+
Sbjct: 276 DVYAHNLETVESLTPHVRD---RRATYRQSLSVLERAKATVPSLITKTSIMLGL-GETDE 331

Query: 346 DFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLRE 400
               T+  +  I        +Y  R     +    +V E VK E+    +++  E
Sbjct: 332 QITQTLKDLRNIQCDVVTFGQYM-RP----TKRHXKVVEYVKPEKFDYWKERALE 381


>gi|281357356|ref|ZP_06243845.1| conserved hypothetical protein [Victivallis vadensis ATCC BAA-548]
 gi|281316387|gb|EFB00412.1| conserved hypothetical protein [Victivallis vadensis ATCC BAA-548]
          Length = 570

 Score = 63.8 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 39/206 (18%), Positives = 70/206 (33%), Gaps = 23/206 (11%)

Query: 185 GCDKF-------CTFCVVPYTRGIEISRSLSQV------VDEARKLIDNGVCEITLLGQN 231
           GC          C FC    +R   +SR L         V+ AR         I      
Sbjct: 29  GCPNREGGFGAGCAFCAEDGSRARHLSRHLDLTGQVAAGVEFARNRYGAEPPYIAY---- 84

Query: 232 VNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMP-Y 290
             A+       EK        +L+      ++    + P  + + ++    +L      +
Sbjct: 85  FQAFTSTFAPAEKLR-RLYREALAAAD--FKVVIIGTRPDALPEPVLDLLSELAREYELW 141

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
           + L VQS  DR L+ + R H      +  +++      I  +   I G PGE+ +DF  T
Sbjct: 142 IELGVQSSHDRTLELIRRGHDFAATVKAANQLAER--GINAACHVIAGLPGESAEDFFRT 199

Query: 351 MDLVDKIGYAQAFSFKYSPRLGTPGS 376
            + +  + +      +      TP +
Sbjct: 200 AERIAALPFRAVKLHQLLTLKKTPLA 225


>gi|78046285|ref|YP_362460.1| lipoyl synthase [Xanthomonas campestris pv. vesicatoria str. 85-10]
 gi|325929155|ref|ZP_08190298.1| lipoate synthase [Xanthomonas perforans 91-118]
 gi|123744074|sp|Q3BXQ3|LIPA_XANC5 RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|78034715|emb|CAJ22360.1| lipoic acid synthetase LipA [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|325540474|gb|EGD12073.1| lipoate synthase [Xanthomonas perforans 91-118]
          Length = 337

 Score = 63.8 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 46/236 (19%), Positives = 77/236 (32%), Gaps = 24/236 (10%)

Query: 161 ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS--QVVDEARKLI 218
           E  S  +       G   F+ + E C + C+FC V + R           +    A  + 
Sbjct: 82  EEASCPNIHECFSHGTATFMILGEVCTRRCSFCDVAHGRPK----PPDASEPASLAATVA 137

Query: 219 DNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD---MSD 275
           D G+  + +   +    R    DG    F D + ++       R+   T   R    M  
Sbjct: 138 DMGLKYVVVTSVD----RDDLRDGGAQHFVDCISAIRASSPNTRIEILTPDFRGKGRMDR 193

Query: 276 CL-IKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSD 334
            L I A    DV    +        +     +           ++ R ++  P IA  S 
Sbjct: 194 ALEILALSPPDVFNHNIETVPDLYPN-----VRPGADYQWSLTLLQRFKAQHPSIATKSG 248

Query: 335 FIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN--MLEQVDENVKA 388
            ++G  GET +  +AT+  +           +Y     TP  +  M     E  KA
Sbjct: 249 IMLGL-GETMEQVQATLRDLRAHDVDMITIGQY--LQPTPHHHPVMRYWTPEEYKA 301


>gi|30019044|ref|NP_830675.1| coproporphyrinogen III oxidase [Bacillus cereus ATCC 14579]
 gi|29894586|gb|AAP07876.1| Coproporphyrinogen oxidase, anaerobic [Bacillus cereus ATCC 14579]
          Length = 498

 Score = 63.8 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 48/245 (19%), Positives = 80/245 (32%), Gaps = 9/245 (3%)

Query: 129 GPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
           G        EL E     +  ++    + D   +L++V   Y  K  V+ ++ I   C  
Sbjct: 129 GMSKEEAHQELRESYLIHEEKIELLQRIVD--CQLAVVPDLYRLKEEVSIYIGIPF-CPT 185

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT-- 246
            C +C  P         S+   +      +      +   G  V      G      T  
Sbjct: 186 KCAYCTFPAYAINGRQGSVDSFLGGLHYEVREIGKFLKEKGVKVTTIYYGGGTPTSITAE 245

Query: 247 -FSDLLYSLSEIKGLVR--LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
               L   + E    V+     T    R  +    K        +  + +  QS     L
Sbjct: 246 EMDMLYEEMYEAFPDVKNVREVTVEAGRPDTITPAKLEVLNKWNIDRISINPQSYHQETL 305

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           K++ R HT  E  +     R +  +  I+ D I+G PGE  D F+ T+D  +K+      
Sbjct: 306 KAIGRHHTVEETIEKYHLAREMGMN-NINMDLIIGLPGEGLDIFKHTLDETEKLMPESLT 364

Query: 364 SFKYS 368
               S
Sbjct: 365 VHTLS 369


>gi|332975140|gb|EGK12042.1| oxygen-independent coproporphyrinogen III oxidase 2 [Desmospora sp.
           8437]
          Length = 505

 Score = 63.8 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 40/224 (17%), Positives = 81/224 (36%), Gaps = 11/224 (4%)

Query: 165 IVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCE 224
           ++   Y   R V+ ++ I   C   C +C  P       + S+ + +    + ++     
Sbjct: 162 VLPDLYELDREVSLYIGIPF-CPTKCAYCTFPAYAIRGRNGSVEEFLAGLHEEMEAIGAW 220

Query: 225 ITLLGQNVNAWRGKGLDGEKCT-------FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCL 277
           +   G  V      G      T       F  +  ++    G+  L      P  +    
Sbjct: 221 LKSRGLPVTTIYFGGGTPTSITARQMDDLFVKMKTAIPGYGGVRELTVEAGRPDTLDVEK 280

Query: 278 IKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIV 337
           +         +  + +  QS  +  LK + R HT  E  +  +  RS+     I+ D I+
Sbjct: 281 LDLLRRWK--VDRISINPQSFEENTLKLIGRHHTVQETLEKYELARSMGLH-NINMDLII 337

Query: 338 GFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           G PGE  D FR ++ +++++          S + G+  +   E+
Sbjct: 338 GLPGEGPDTFRQSLRMMEELKPESLTVHTLSFKRGSHMTRNPEK 381


>gi|262280628|ref|ZP_06058411.1| Fe-S oxidoreductase [Acinetobacter calcoaceticus RUH2202]
 gi|262257528|gb|EEY76263.1| Fe-S oxidoreductase [Acinetobacter calcoaceticus RUH2202]
          Length = 793

 Score = 63.8 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 48/264 (18%), Positives = 86/264 (32%), Gaps = 35/264 (13%)

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRG---VTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRS 206
           + DY  +  + RL     G  R      +   + I  GC   CTFC +    G  I +RS
Sbjct: 386 EMDYVFDLPYARLPHPTYGNARFPAFDMIKFSVNIMRGCFGGCTFCSITEHEGRIIQNRS 445

Query: 207 LSQVVDEARKLIDNGVCEITLLGQ------NVNAWRGKGLDGEK---------------- 244
              ++ E  K+ D       ++        N+     K  + EK                
Sbjct: 446 EDSILREIEKIRDTAPNFTGIISDLGGPTANMYRLHCKDPEIEKNCRKPSCVYPGVCQNL 505

Query: 245 ----CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL--DVLMPYLHLPVQSG 298
                    L      IKG+ ++   +    D++    +   +L    +  YL +  +  
Sbjct: 506 HTDHAPLVQLYRKARAIKGVKKILIGSGLRYDLAVLNPEYVKELVQHHVGGYLKIAPEHT 565

Query: 299 SDRILKSMNRR--HTAYEYRQIIDRI-RSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
            +  L  M +    T   ++Q+ DR  +    +  +   FI   PG T+ D       + 
Sbjct: 566 ENGPLSKMMKPGIGTYDRFKQMFDRFSKEAGKEQYLIPYFIAAHPGTTEYDMMNLAIWLK 625

Query: 356 KIGYAQAFSFKYSPRLGTPGSNML 379
           K G+       + P      + M 
Sbjct: 626 KNGFRADQVQTFYPSPMATATTMY 649


>gi|328465519|gb|EGF36748.1| coproporphyrinogen III oxidase [Listeria monocytogenes 1816]
          Length = 342

 Score = 63.8 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 37/200 (18%), Positives = 73/200 (36%), Gaps = 10/200 (5%)

Query: 186 CDKFCTFCVV--PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
           C+  C +C     +  G  +   +  ++ E       G          V    G      
Sbjct: 21  CEHICYYCDFNKVFLEGQPVDEYVDLLIKEMELTAAKGPIAPV---DTVFVGGGTPTTLN 77

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
           +   + L  ++  I  L +    +         L K     D  +  + + VQS ++ +L
Sbjct: 78  EAQIARLCTAIHNILPLKKDIEFSFEANPGDLSLSKLQAMQDHGVNRISMGVQSFNNELL 137

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           K + R HT  +  Q ++ +R +  +  +S D I   PG+T+ DF+ T+     +      
Sbjct: 138 KKIGRIHTVKDVYQSVENMRKIGFE-NVSIDLIFSLPGQTEADFQDTLK--QALDLDLPH 194

Query: 364 SFKYS--PRLGTPGSNMLEQ 381
              YS      T   N++++
Sbjct: 195 YSAYSLIIEPKTIFYNLMQK 214


>gi|329119854|ref|ZP_08248528.1| lipoic acid synthetase [Neisseria bacilliformis ATCC BAA-1200]
 gi|327464010|gb|EGF10321.1| lipoic acid synthetase [Neisseria bacilliformis ATCC BAA-1200]
          Length = 330

 Score = 63.8 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 38/248 (15%), Positives = 82/248 (33%), Gaps = 18/248 (7%)

Query: 127 VVGPQTYYRLPELLERARFGKRV------VDTDYSVEDKFERLSIVDGGYNRKRGVTAFL 180
           VV  +   + PE +       +       +  +  +    E  +  +      +G   F+
Sbjct: 30  VVPLEQKLKKPEWIRAKLPNPKKFFEIKDILREQKMHTVCEEAACPNISECFSKGTATFM 89

Query: 181 TIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL 240
            + + C + C FC V + R   +     +  + A  +    +  + +   +    R    
Sbjct: 90  IMGDMCTRRCPFCAVGHGRPNPL--DPDEPQNLANSVRAMNLRYVVITSVD----RDDLR 143

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV-LMPYLHLPVQSGS 299
           DG    F+D + ++ +     ++       R   D  +         +M +         
Sbjct: 144 DGGAQHFADCITAIRQTSPFTKIEVLVPDFRGRLDIALNILAQTPPDVMNHNLETH---- 199

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
            R+ K            +++ R + + P +   S  +VG  GETDD+ R  MD +     
Sbjct: 200 PRLYKMARPGADYKHSLELLRRYKQMMPHVPTKSGIMVGL-GETDDEVREIMDDMRAHDI 258

Query: 360 AQAFSFKY 367
                 +Y
Sbjct: 259 EMITIGQY 266


>gi|290894236|ref|ZP_06557205.1| coproporphyrinogen III oxidase [Listeria monocytogenes FSL J2-071]
 gi|290556233|gb|EFD89778.1| coproporphyrinogen III oxidase [Listeria monocytogenes FSL J2-071]
          Length = 385

 Score = 63.8 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 37/200 (18%), Positives = 73/200 (36%), Gaps = 10/200 (5%)

Query: 186 CDKFCTFCVV--PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
           C+  C +C     +  G  +   +  ++ E       G          V    G      
Sbjct: 21  CEHICYYCDFNKVFLEGQPVDEYVDLLIKEMELTAAKGPIAPV---DTVFVGGGTPTTLN 77

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
           +   + L  ++  I  L +    +         L K     D  +  + + VQS ++ +L
Sbjct: 78  EAQIARLCTAIHNILPLKKDIEFSFEANPGDLSLSKLQAMQDHGVNRISMGVQSFNNELL 137

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           K + R HT  +  Q ++ +R +  +  +S D I   PG+T+ DF+ T+     +      
Sbjct: 138 KKIGRIHTVKDVYQSVENMRKIGFE-NVSIDLIFSLPGQTEADFQDTLK--QALDLDLPH 194

Query: 364 SFKYS--PRLGTPGSNMLEQ 381
              YS      T   N++++
Sbjct: 195 YSAYSLIIEPKTIFYNLMQK 214


>gi|217964378|ref|YP_002350056.1| oxygen-independent coproporphyrinogen III oxidase [Listeria
           monocytogenes HCC23]
 gi|217333648|gb|ACK39442.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Listeria monocytogenes HCC23]
 gi|307571057|emb|CAR84236.1| oxygen-independent coproporphyrinogen III oxidase [Listeria
           monocytogenes L99]
          Length = 385

 Score = 63.8 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 37/200 (18%), Positives = 73/200 (36%), Gaps = 10/200 (5%)

Query: 186 CDKFCTFCVV--PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
           C+  C +C     +  G  +   +  ++ E       G          V    G      
Sbjct: 21  CEHICYYCDFNKVFLEGQPVDEYVDLLIKEMELTAAKGPIAPV---DTVFVGGGTPTTLN 77

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
           +   + L  ++  I  L +    +         L K     D  +  + + VQS ++ +L
Sbjct: 78  EAQIARLCTAIHNILPLKKDIEFSFEANPGDLSLSKLQAMQDHGVNRISMGVQSFNNELL 137

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           K + R HT  +  Q ++ +R +  +  +S D I   PG+T+ DF+ T+     +      
Sbjct: 138 KKIGRIHTVKDVYQSVENMRKIGFE-NVSIDLIFSLPGQTEADFQDTLK--QALDLDLPH 194

Query: 364 SFKYS--PRLGTPGSNMLEQ 381
              YS      T   N++++
Sbjct: 195 YSAYSLIIEPKTIFYNLMQK 214


>gi|16800581|ref|NP_470849.1| coproporphyrinogen III oxidase [Listeria innocua Clip11262]
 gi|16413986|emb|CAC96744.1| hemN [Listeria innocua Clip11262]
          Length = 385

 Score = 63.8 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 38/200 (19%), Positives = 73/200 (36%), Gaps = 10/200 (5%)

Query: 186 CDKFCTFCVV--PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
           C+  C +C     +  G  +   +  ++ E       G          V    G      
Sbjct: 21  CEHICYYCDFNKVFLEGQPVDEYVDLLIKEMEMTAAKGPIAPV---DTVFVGGGTPTTLN 77

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
           +   + L  ++ EI  L      +         + K     D  +  + + VQS ++ +L
Sbjct: 78  EAQIARLCTAIREILPLKNEIEFSFEANPGDLSISKLQAMQDHGVNRISMGVQSFNNELL 137

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           K + R HT  +  Q ++ +R V  +  +S D I   PG+T+ DF+ T+     +      
Sbjct: 138 KKIGRIHTVKDVYQSVENMRKVGFE-NVSIDLIFSLPGQTEADFKDTLK--QALDLDLPH 194

Query: 364 SFKYS--PRLGTPGSNMLEQ 381
              YS      T   N++++
Sbjct: 195 YSAYSLIIEPKTIFYNLMQK 214


>gi|254185535|ref|ZP_04892122.1| B12-binding/radical SAM domain protein [Burkholderia pseudomallei
           1655]
 gi|184209769|gb|EDU06812.1| B12-binding/radical SAM domain protein [Burkholderia pseudomallei
           1655]
          Length = 651

 Score = 63.8 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 56/307 (18%), Positives = 103/307 (33%), Gaps = 44/307 (14%)

Query: 95  IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR---------- 144
            +   DL V++ G  A     +IL R P  +++V  +    LP +L+             
Sbjct: 102 KRREPDLPVLLGGPHATMLHRQILERFPQFDIIVRYEADEILPAVLDCLEQRTFDVIPGL 161

Query: 145 ------FGKRVVDTDYSVE-DKFERLSIVDG-GYNRKRGVTAFLTIQ--EGCDKFCTFCV 194
                  G  +  TD   + ++ +RL I     Y       + L I+   GC   CTFC 
Sbjct: 162 SWRATGHGAPLRFTDGKPKVEELDRLPIASYDHYPVDDLGLSMLRIEAGRGCPFACTFCS 221

Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL 254
                  + S  L        +L                +      D        ++   
Sbjct: 222 TAGFF--QRSFRLKSAERLVHELDILHRRYRV-------SDFKLDHDMFTVNRHKVMAFC 272

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
             + G       ++    + + L++   D       L+  V++GS+R+     +R     
Sbjct: 273 EAVAGRGYRWRASARIDCVDEALLRKMADAG--CVNLYFGVETGSERMQTICRKR----L 326

Query: 315 YRQIIDRIRSVRPDIAISSD--FIVGFPGETDDDFRATMDLVDKIG-----YAQAFSFKY 367
             ++++ I +      I +   FI G+P E+  D   T+D++ +         Q      
Sbjct: 327 DLRLVEPILAAADSFGIETTASFITGYPQESGQDQDDTLDMIGRCARRPSCLTQLHMLA- 385

Query: 368 SPRLGTP 374
            P  GTP
Sbjct: 386 -PEPGTP 391


>gi|46907704|ref|YP_014093.1| coproporphyrinogen III oxidase [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|47093483|ref|ZP_00231246.1| oxygen-independent coproporphyrinogen III oxidase, putative
           [Listeria monocytogenes str. 4b H7858]
 gi|254824465|ref|ZP_05229466.1| coproporphyrinogen III oxidase [Listeria monocytogenes FSL J1-194]
 gi|254932661|ref|ZP_05266020.1| coproporphyrinogen III oxidase [Listeria monocytogenes HPB2262]
 gi|254991904|ref|ZP_05274094.1| coproporphyrinogen III oxidase [Listeria monocytogenes FSL J2-064]
 gi|46880973|gb|AAT04270.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Listeria monocytogenes serotype 4b str. F2365]
 gi|47018159|gb|EAL08929.1| oxygen-independent coproporphyrinogen III oxidase, putative
           [Listeria monocytogenes str. 4b H7858]
 gi|293584220|gb|EFF96252.1| coproporphyrinogen III oxidase [Listeria monocytogenes HPB2262]
 gi|293593702|gb|EFG01463.1| coproporphyrinogen III oxidase [Listeria monocytogenes FSL J1-194]
 gi|332311918|gb|EGJ25013.1| Oxygen-independent coproporphyrinogen III oxidase [Listeria
           monocytogenes str. Scott A]
          Length = 385

 Score = 63.8 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 37/200 (18%), Positives = 73/200 (36%), Gaps = 10/200 (5%)

Query: 186 CDKFCTFCVV--PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
           C+  C +C     +  G  +   +  ++ E       G          V    G      
Sbjct: 21  CEHICYYCDFNKVFLEGQPVDEYVDLLIKEMELTAAKGPIAPV---DTVFVGGGTPTTLN 77

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
           +   + L  ++  I  L +    +         L K     D  +  + + VQS ++ +L
Sbjct: 78  EAQIARLCTAIHNILPLKKDIEFSFEANPGDLSLSKLQAMQDHGVNRISMGVQSFNNELL 137

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           K + R HT  +  Q ++ +R +  +  +S D I   PG+T+ DF+ T+     +      
Sbjct: 138 KKIGRIHTVKDVYQSVENMRKIGFE-NVSIDLIFSLPGQTEADFQDTLK--QALDLDLPH 194

Query: 364 SFKYS--PRLGTPGSNMLEQ 381
              YS      T   N++++
Sbjct: 195 YSAYSLIIEPKTIFYNLMQK 214


>gi|167639002|ref|ZP_02397276.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Bacillus anthracis str. A0193]
 gi|177653884|ref|ZP_02935956.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Bacillus anthracis str. A0174]
 gi|254734343|ref|ZP_05192056.1| coproporphyrinogen III oxidase [Bacillus anthracis str. Western
           North America USA6153]
 gi|167513132|gb|EDR88504.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Bacillus anthracis str. A0193]
 gi|172081112|gb|EDT66189.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Bacillus anthracis str. A0174]
          Length = 495

 Score = 63.8 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 48/245 (19%), Positives = 80/245 (32%), Gaps = 9/245 (3%)

Query: 129 GPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
           G        EL E     +  ++    + D   +L++V   Y  K  V+ ++ I   C  
Sbjct: 126 GMSKEEAHQELRESYLIHEEKIELLQRIVD--CQLAVVPDLYRLKEEVSIYIGIPF-CPT 182

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT-- 246
            C +C  P         S+   +      +      +   G  V      G      T  
Sbjct: 183 KCAYCTFPAYAINGRQGSVDSFLGGLHYEVCEIGKFLKEKGVTVTTIYYGGGTPTSITAE 242

Query: 247 -FSDLLYSLSEIKGLVR--LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
               L   + E    V+     T    R  +    K        +  + +  QS     L
Sbjct: 243 EMDMLYEEMYEAFPDVKNVREVTVEAGRPDTITPAKLEVLNKWNIDRISINPQSYHQETL 302

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           K++ R HT  E  +     R +  +  I+ D I+G PGE  D F+ T+D  +K+      
Sbjct: 303 KAIGRHHTVEETIEKYHLAREMGMN-NINMDLIIGLPGEGLDIFKHTLDETEKLMPESLT 361

Query: 364 SFKYS 368
               S
Sbjct: 362 VHTLS 366


>gi|302037647|ref|YP_003797969.1| hypothetical protein NIDE2331 [Candidatus Nitrospira defluvii]
 gi|300605711|emb|CBK42044.1| conserved protein of unknown function, Fe-S oxidoreductase
           [Candidatus Nitrospira defluvii]
          Length = 496

 Score = 63.8 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 42/227 (18%), Positives = 82/227 (36%), Gaps = 17/227 (7%)

Query: 159 KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV--PYTRGIEISRSLSQVVDEARK 216
           ++   +    G    R   A L    GC   C+FC +  P+   +  + S   V+ +  +
Sbjct: 192 RYRAHNWHCFGNLEARTPYASLQTSLGCPFTCSFCCINSPFGTPMLRTWSPDNVIGQIDR 251

Query: 217 LIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDC 276
           L+ +        G +      +     +     +   +  I+   RL        D    
Sbjct: 252 LVRD-------YGISNIKIPDEMFVLNRRHVIGICDRI--IERGYRLNIWAYARVDTVQD 302

Query: 277 LIKAHGDLDVL-MPYLHLPVQSGSDRILKSMNRRHTAYEYR-QIIDRIRSVRPDIAISSD 334
             +    L      +L L ++SGS  +   + +           +D+IRS    I ++++
Sbjct: 303 --EVLAKLARAGFTWLGLGIESGSQHVRDGVEKGRFGERDIVATVDKIRSY--GIHVAAN 358

Query: 335 FIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +I G P +T +  RAT+DL   +    A  +      G+P     +Q
Sbjct: 359 YIFGLPDDTMESMRATLDLALTLNTEWANFYCAMAYPGSPLYTQAKQ 405


>gi|285017612|ref|YP_003375323.1| lipoyl synthase (lipoyl-acyl-carrier-protein synthase) [Xanthomonas
           albilineans GPE PC73]
 gi|283472830|emb|CBA15335.1| probable lipoyl synthase (lipoyl-acyl-carrier-protein synthase)
           [Xanthomonas albilineans]
          Length = 336

 Score = 63.8 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 34/211 (16%), Positives = 70/211 (33%), Gaps = 16/211 (7%)

Query: 161 ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN 220
           E  S  +       G   F+ + E C + C+FC V    G        +    A+ + D 
Sbjct: 81  EEASCPNIHECFSHGTATFMILGEVCTRRCSFCDV--AHGRPKPPDAGEPASLAQTVADM 138

Query: 221 GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPR--DMSDCLI 278
           G+  + +   +    R    DG    F+D + ++       R+   T   R     +  +
Sbjct: 139 GLKYVVVTSVD----RDDLRDGGAQHFADCIAAIRVAAPATRIEILTPDFRGKGRMERAL 194

Query: 279 KAHGDLD--VLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFI 336
           +        V    +    +   +     +           ++ + ++  P IA  S  +
Sbjct: 195 EILATHPPDVFNHNIETVPELYPN-----VRPGADYQWSLTLLQKFKAQHPSIATKSGIM 249

Query: 337 VGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           +G  GET +  +AT+  +           +Y
Sbjct: 250 LGL-GETLEQVQATLRDLRAHDVDMVTIGQY 279


>gi|54307748|ref|YP_128768.1| putative Fe-S oxidoreductase [Photobacterium profundum SS9]
 gi|46912171|emb|CAG18966.1| putative Fe-S oxidoreductase [Photobacterium profundum SS9]
          Length = 314

 Score = 63.8 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 30/116 (25%), Positives = 49/116 (42%), Gaps = 10/116 (8%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +L L +Q+ +D+ LK +NR H    Y +I  R R++   I + +  IVG PG+T +D   
Sbjct: 141 WLELGLQTANDKTLKRINRGHDFACYEKITKRARAM--GIKVCTHLIVGLPGDTKEDNLE 198

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQ-KKLREQQVS 404
           T+     +G             G+  +          KA+RL  L  +   E    
Sbjct: 199 TLKRTIAVGTDGIKLHPLHIVEGSIMAKAW-------KADRLEALSLETYTEIAAE 247


>gi|332299924|ref|YP_004441845.1| Radical SAM domain protein [Porphyromonas asaccharolytica DSM
           20707]
 gi|332176987|gb|AEE12677.1| Radical SAM domain protein [Porphyromonas asaccharolytica DSM
           20707]
          Length = 349

 Score = 63.8 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 31/231 (13%), Positives = 68/231 (29%), Gaps = 15/231 (6%)

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE-ISR-SLS 208
           DT    E +    +I +  + RK  +   + I   C   C +C +  +       R +  
Sbjct: 30  DTHLEHELQVRAEAIAEQHFGRKIYLRGLVEISNICRNDCYYCGIRSSNEHVTRYRLTAD 89

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
           +V+    +  + G     L G       G+ L         L+ S+        +  +  
Sbjct: 90  EVMSACARGYEIGFRTFVLQG-------GEDLYWRGERLLSLVRSIRSSYPECAITLSLG 142

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
                    +   G    L+ +     +       +            Q +  ++ +   
Sbjct: 143 EMECEEYEALYRAGANRYLLRHETYNQEHYQ----RLHPSTMAQEHRLQALRDLKQI--G 196

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
             + +  +VG PG+T       +D + ++         + P   TP     
Sbjct: 197 YQVGTGIMVGSPGQTTAHLAQDLDFIRQLQPEMIGVGPFIPHEDTPLGTYP 247


>gi|313618877|gb|EFR90746.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Listeria innocua FSL S4-378]
          Length = 385

 Score = 63.8 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 38/200 (19%), Positives = 73/200 (36%), Gaps = 10/200 (5%)

Query: 186 CDKFCTFCVV--PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
           C+  C +C     +  G  +   +  ++ E       G          V    G      
Sbjct: 21  CEHICYYCDFNKVFLEGQPVDEYVDLLIKEMEMTAAKGPIAPV---DTVFVGGGTPTTLN 77

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
           +   + L  ++ EI  L      +         + K     D  +  + + VQS ++ +L
Sbjct: 78  EAQIARLCTAIQEILPLKNEIEFSFEANPGDLSISKLQAMQDHGVNRISMGVQSFNNELL 137

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           K + R HT  +  Q ++ +R V  +  +S D I   PG+T+ DF+ T+     +      
Sbjct: 138 KKIGRIHTVKDVYQSVENMRKVGFE-NVSIDLIFSLPGQTEADFKDTLK--QALDLDLPH 194

Query: 364 SFKYS--PRLGTPGSNMLEQ 381
              YS      T   N++++
Sbjct: 195 YSAYSLIIEPKTIFYNLMQK 214


>gi|237509528|ref|ZP_04522243.1| B12-binding/radical SAM domain protein [Burkholderia pseudomallei
           MSHR346]
 gi|235001733|gb|EEP51157.1| B12-binding/radical SAM domain protein [Burkholderia pseudomallei
           MSHR346]
          Length = 647

 Score = 63.8 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 51/310 (16%), Positives = 100/310 (32%), Gaps = 50/310 (16%)

Query: 95  IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF--------- 145
            +   DL V++ G  A     +IL R P  +++V  +    LP +L+             
Sbjct: 98  KRREPDLPVLLGGPHATMLHRQILERFPQFDIIVRYEADEILPAVLDCLEQRTFDVIPGL 157

Query: 146 ----------------GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKF 189
                             +V + D      ++   + D G +  R     +    GC   
Sbjct: 158 SWRATGRGAPLRFTDGKPKVEELDRLPIASYDHYPVDDLGLSMLR-----IEAGRGCPFA 212

Query: 190 CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSD 249
           CTFC        + S  L        +L                +      D        
Sbjct: 213 CTFCSTAGFF--QRSFRLKSAERLVHELDILHRRYRV-------SDFKLDHDMFTVNRHK 263

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
           ++     + G       ++    + + L++   D       L+  V++GS+R+     +R
Sbjct: 264 VMAFCEAVAGRGYRWRASARIDCVDEALLRKMADAG--CVNLYFGVETGSERMQTICRKR 321

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSD--FIVGFPGETDDDFRATMDLVDKI--GYAQ-AFS 364
                  ++++ I +      I +   FI G+P E+  D   T+D++ +     +     
Sbjct: 322 ----LDLRLVEPILAAADSFGIETTASFITGYPQESGQDQDDTLDMIGRCARRLSCLTQL 377

Query: 365 FKYSPRLGTP 374
              +P  GTP
Sbjct: 378 HMLAPEPGTP 387


>gi|217978055|ref|YP_002362202.1| Radical SAM domain protein [Methylocella silvestris BL2]
 gi|217503431|gb|ACK50840.1| Radical SAM domain protein [Methylocella silvestris BL2]
          Length = 546

 Score = 63.8 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 54/329 (16%), Positives = 115/329 (34%), Gaps = 34/329 (10%)

Query: 62  ADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRS 121
           AD + ++  HI             ++ ++     ++G    V + G    A  E+     
Sbjct: 86  ADAVFVSGMHI----------QRRQMEDICARAHEQGKP--VALGGPSVSAAPEQ-YPAF 132

Query: 122 PIVNVVVGPQTYYRLPELLER--ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAF 179
             ++V         L EL+ R  +R  ++++          E  +         R     
Sbjct: 133 DYLHVGELGDATEALIELIARDVSRPPRQIILKTKDRRPLAEFPAPAYELAAIDRYFLGS 192

Query: 180 LTIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVC-EITLLGQNVNAWRG 237
           +    GC   C FC +P   G     ++ +QVV E  KL+  GV   I  +  N+     
Sbjct: 193 IQFSSGCPYTCEFCDIPGLYGRVPRLKTPAQVVGELDKLLACGVNGSIYFVDDNLV---- 248

Query: 238 KGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP----RDMSDCLIKAHGDLDVLMPYLHL 293
               G +    DLL  L   +       + S         S  ++K   +       +  
Sbjct: 249 ----GNRRALLDLLPHLVAWQNRNGYAVSLSCEATLNIARSPDILKLMRE--AAFDTIFC 302

Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV-RPDIAISSDFIVGFPGETDDDFRATMD 352
            +++     L+++ + H     R I++ ++++    + + +  I+G   +T +     ++
Sbjct: 303 GIETPEPEALQAIQKSHN--MVRPILESVKAINDHGMEVVTGIILGLDTDTAESGDRILE 360

Query: 353 LVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
            +++     A          TP  + LE+
Sbjct: 361 FLEQSNIPLATINLLQALPKTPLWDRLER 389


>gi|332305301|ref|YP_004433152.1| Radical SAM domain protein [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332172630|gb|AEE21884.1| Radical SAM domain protein [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 782

 Score = 63.8 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 56/366 (15%), Positives = 114/366 (31%), Gaps = 62/366 (16%)

Query: 70  CHIREKAAEKVYSFLGRIRNL-------KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSP 122
           C +  +A ++      + + +       K  R K      V++         +       
Sbjct: 275 CAVSSEADKQAAIEEQKAQPVVVQPFTSKTKRRKPWDKTYVMLPPYDVVRAEK---THYA 331

Query: 123 IVNVVVGPQTYYRLPELLERARFGKRVVDTDYS--VEDKFERLSIVDGGYNRKRGVT--- 177
             + ++  +T       L + R G R++  +      +  E  ++ D  Y R        
Sbjct: 332 HTSRILHKETNPGCARALAQ-RHGDRIIWINPPAFPLETHEMDAVFDLPYARVPHPRYGK 390

Query: 178 ----------AFLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDN--GVCE 224
                       + I  GC   CTFC +    G  I SRS   ++ E  ++ D   G   
Sbjct: 391 AKIPAYDMIKTSVNIMRGCFGGCTFCSITEHEGRVIQSRSEESIIREIEQIRDKVPGFTG 450

Query: 225 IT--LLGQNVNAWR----------------------GKGLDGEKCTFSDLLYSLSEIKGL 260
           +   L G   N ++                         LD ++    +L      ++G+
Sbjct: 451 VISDLGGPTANMYKLRCKSPKAEQACRRLSCVWPEICGHLDTDQTPTVELYRKARNVEGV 510

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRR--HTAYEYR 316
            ++   +    D++        +L    +  YL +  +      L  M +    T   ++
Sbjct: 511 KKVLIASGVRYDLAIEDPNYVRELVTHHVGGYLKIAPEHTEKAPLDKMMKPGMGTYDRFK 570

Query: 317 QIIDRIR-SVRPDIAISSDFIVGFPGETDDDFRATMDLVDK--IGYAQAFSFKYSPRLGT 373
           ++ D+       +  +   FI   PG  D+D       + +      Q  +F  SP    
Sbjct: 571 ELFDKYTMEAGKEQYLIPYFISAHPGTEDEDMLNLALWLKERNFKLDQVQNFYPSPMAN- 629

Query: 374 PGSNML 379
             + M 
Sbjct: 630 -ATTMY 634


>gi|148979986|ref|ZP_01815826.1| lipoyl synthase [Vibrionales bacterium SWAT-3]
 gi|145961509|gb|EDK26812.1| lipoyl synthase [Vibrionales bacterium SWAT-3]
          Length = 321

 Score = 63.8 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 30/182 (16%), Positives = 63/182 (34%), Gaps = 10/182 (5%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V    G  ++    +    A+ + D  +  + +   +    R    DG   
Sbjct: 94  CTRRCPFCDV--AHGRPVAPEAEEPKKLAKTIKDMKLKYVVITSVD----RDDLRDGGAQ 147

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
            F+D    + E+   +R+       R   D  ++   D     P +       + R+ + 
Sbjct: 148 HFADCNREIRELNPNIRIETLVPDFRGRMDVALELLKDNP---PDVFNHNLETAPRLYRK 204

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
                       ++ + +   PDI   S  ++G  GET ++    +  + + G       
Sbjct: 205 ARPGANYKWSLDLLKKFKEQHPDIPTKSGVMMGL-GETKEEIIQVLKDLREHGVTMLTLG 263

Query: 366 KY 367
           +Y
Sbjct: 264 QY 265


>gi|206895586|ref|YP_002246504.1| radical SAM domain protein [Coprothermobacter proteolyticus DSM
           5265]
 gi|206738203|gb|ACI17281.1| radical SAM domain protein [Coprothermobacter proteolyticus DSM
           5265]
          Length = 595

 Score = 63.8 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 45/236 (19%), Positives = 86/236 (36%), Gaps = 26/236 (11%)

Query: 177 TAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEAR-KLIDNGVCEITLLGQNVNAW 235
            A + +  GC + C FC               +VV+  +      G  E+ LL  +   +
Sbjct: 252 RAVVELARGCTRGCHFCHASSYYRPVRETPPHEVVELVKSIKQTTGFTEVGLLSLSTFDY 311

Query: 236 RGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPV 295
                       S+++  LS     + +   +     +   L+K       L   L    
Sbjct: 312 ---------SKLSEVVDLLS--GEHLSMSLPSLRLDSLDTDLLKKVDPTRHL--TLTFAP 358

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
           ++GSD++ K +N+  +  E  Q +D +            F+VG P ET+ D    + L++
Sbjct: 359 EAGSDQLRKKLNKPFSNEEILQAVDLLSKSGWS-KFKFYFMVGLPEETEKDVLDIVSLLN 417

Query: 356 KI--------GYAQAFSFKYS--PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQ 401
           +           ++  +   S  P+  TP      Q+      E+   +QK L++Q
Sbjct: 418 EADTIAFKNNRRSRIHATVASFVPKPFTP-FQWERQISPEETLEKYTLIQKHLKKQ 472


>gi|59711349|ref|YP_204125.1| lipoyl synthase [Vibrio fischeri ES114]
 gi|75431760|sp|Q5E6V9|LIPA_VIBF1 RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|59479450|gb|AAW85237.1| lipoate synthase [Vibrio fischeri ES114]
          Length = 321

 Score = 63.8 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 33/211 (15%), Positives = 71/211 (33%), Gaps = 12/211 (5%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V    G  ++    +    A+ + D  +  + +   +    R    DG   
Sbjct: 94  CTRRCPFCDV--AHGRPVAPEAEEPKKLAKTIQDMKLKYVVITSVD----RDDLRDGGAQ 147

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
            F+D    +  +   +R+       R   D  ++A  D     P +       + R+ + 
Sbjct: 148 HFADCNREIRALNPEIRIETLVPDFRGRMDRALEAMIDNP---PDVFNHNLETAPRLYRK 204

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           +           ++ + +   P++   S  ++G  GET ++    +  +   G       
Sbjct: 205 VRPGANYQWSLDLLKKFKEQHPNVPTKSGLMMGL-GETKEEIVEVLKDLRAHGVTMLTLG 263

Query: 366 KYSP--RLGTPGSNMLEQVDENVKAERLLCL 394
           +Y    R   P    +   + +   E  L L
Sbjct: 264 QYLAPSRHHLPVERYVPPAEFDELKEIALEL 294


>gi|271502635|ref|YP_003335661.1| oxygen-independent coproporphyrinogen III oxidase [Dickeya dadantii
           Ech586]
 gi|270346190|gb|ACZ78955.1| oxygen-independent coproporphyrinogen III oxidase [Dickeya dadantii
           Ech586]
          Length = 457

 Score = 63.8 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 45/235 (19%), Positives = 87/235 (37%), Gaps = 19/235 (8%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC         ++R L +  +   +L         L           G  G   
Sbjct: 62  CYRLCYFC----GCNKLVTRQLHKADEYLDRLALEIHQRAPLFANRTVTQMHWG--GGTP 115

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL-------MPYLHLPVQSG 298
           TF      +S +  L+R  +  S   +MS  +     +LDVL          L + VQ  
Sbjct: 116 TF-LNKAQISRLMSLLRQHFHFSEHAEMSLEVDPREIELDVLDHLRAEGFNRLSMGVQDF 174

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS-DFIVGFPGETDDDFRATMDLVDKI 357
           +  + + +NR         +I+R +++      ++ D I G P +T D F  T+  V ++
Sbjct: 175 NKEVQRLVNREQDEAFIFALIERAKAL--GFTSTNIDLIYGLPKQTPDSFAFTLQRVAEL 232

Query: 358 GYAQAFSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVG 411
              +   F Y+       +   +++ D     ++L  LQ+ ++    +     +G
Sbjct: 233 RPDRLSVFNYAHLPSLFAAQRKIKEADLPDAEQKLAILQQTIQSLTAAGYQ-FIG 286


>gi|254432813|ref|ZP_05046516.1| radical SAM domain protein [Cyanobium sp. PCC 7001]
 gi|197627266|gb|EDY39825.1| radical SAM domain protein [Cyanobium sp. PCC 7001]
          Length = 552

 Score = 63.8 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 55/328 (16%), Positives = 116/328 (35%), Gaps = 33/328 (10%)

Query: 62  ADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRS 121
           A+L+V++   +++     + + + R +            L V V G  A +  +      
Sbjct: 77  AELVVISGMIVQKG---DMAAQIARAKQ---------RGLPVAVGGPFASSTPD--APEL 122

Query: 122 PIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTA--F 179
            + +  V  +    LP  +E  + G+R    +   E      + +      +    +   
Sbjct: 123 DLADFKVLDEGEITLPLFIEALQRGERQGRFNSGGEKPDVTGTPIPRFDLLEMDAYSEMS 182

Query: 180 LTIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK 238
           +    GC   C FC +    G +  ++   Q++ E ++L D G      L  +       
Sbjct: 183 VQFSRGCPFQCEFCDIIVLYGRKPRTKEPDQLIAELQRLYDLGWRRSVFLVDD------- 235

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYT----TSHPRDMSDCLIKAHGDLDVLMPYLHLP 294
              G K     LL +L + +      ++     S      D L++   +       + L 
Sbjct: 236 NFIGNKRNVKRLLPALKQWQIEHGYPFSFATEASVDLAADDDLMQMMVECR--FESVFLG 293

Query: 295 VQSGSDRILKSMNRR-HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
           +++  +  L+   ++ +T       ++RI S    + + + FI+GF GE        +D 
Sbjct: 294 IETPDEASLEVAGKKQNTRSSLDDSVNRITSY--GLRVMAGFIIGFDGEKQGAGDRIVDF 351

Query: 354 VDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           V + G   A          T   + LE+
Sbjct: 352 VTRTGIPHAMMGMLQALPNTALWHRLER 379


>gi|166031360|ref|ZP_02234189.1| hypothetical protein DORFOR_01049 [Dorea formicigenerans ATCC
           27755]
 gi|166028765|gb|EDR47522.1| hypothetical protein DORFOR_01049 [Dorea formicigenerans ATCC
           27755]
          Length = 582

 Score = 63.8 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 39/215 (18%), Positives = 77/215 (35%), Gaps = 12/215 (5%)

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           + +  + V      +  V     +      +     GC   C++C+          RSL 
Sbjct: 158 ICERPWRVPMDLSEVPFVYHDMKKFENKIIYYETSRGCPFSCSYCL-SSIDKRLRFRSLD 216

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK-GLVRLRYTT 267
            V +E +  +D+ V ++  + +  N      +   K         + E   G+    +  
Sbjct: 217 LVFNELQFFLDHKVPQVKFVDRTFNCKHDHAMAIWKY--------IQEHDNGITNFHFEV 268

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
           +    ++D  I+    +   +  L + VQS +   ++ + R     E R+ + RI+    
Sbjct: 269 AADL-LNDEEIRLIRQMRPGLIQLEIGVQSTNTDTIREIRRTMRLEEVREHVARIKEK-G 326

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           +I    D I G P E    FR + D V  +   Q 
Sbjct: 327 NIHQHLDLIAGLPYEDIKSFRKSFDDVYSMRPDQL 361


>gi|224825269|ref|ZP_03698374.1| lipoic acid synthetase [Lutiella nitroferrum 2002]
 gi|224602190|gb|EEG08368.1| lipoic acid synthetase [Lutiella nitroferrum 2002]
          Length = 315

 Score = 63.8 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 41/266 (15%), Positives = 90/266 (33%), Gaps = 20/266 (7%)

Query: 109 VAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-ERARFGKRVVDT-----DYSVEDKFER 162
             + +G E   R PI   +V      + PE +  +   G+R  +      +  +    E 
Sbjct: 8   GVKHKGAEKTARIPI--KIVPLDEKLKKPEWIRAKLPNGQRFNEIKQILREQKLHTVCEE 65

Query: 163 LSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGV 222
            +  + G     G   F+ + + C + C FC V + R   +    ++    A  +    +
Sbjct: 66  ATCPNIGECFSNGTATFMIMGDICTRRCPFCDVGHGRPNPL--DPNEPKHLAETVAALRL 123

Query: 223 CEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHG 282
             + +   +    R    DG    F+D +  + ++    ++       R   D  +    
Sbjct: 124 KYVVITSVD----RDDLRDGGAQHFADCISEIRKLSPSTQIEVLVPDFRGRLDIALDILT 179

Query: 283 DLDV-LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPG 341
                +M +        + R+ K             ++   ++  P+++  S  +VG  G
Sbjct: 180 QTPPDVMNHNL----ETAPRLYKQARPGADYQHSLTLLKEFKARNPNVSTKSGIMVGL-G 234

Query: 342 ETDDDFRATMDLVDKIGYAQAFSFKY 367
           ETD++    M  +           +Y
Sbjct: 235 ETDEEVYEVMADMRAHDIDMITIGQY 260


>gi|149918077|ref|ZP_01906570.1| radical SAM domain protein [Plesiocystis pacifica SIR-1]
 gi|149821082|gb|EDM80488.1| radical SAM domain protein [Plesiocystis pacifica SIR-1]
          Length = 410

 Score = 63.8 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 55/290 (18%), Positives = 91/290 (31%), Gaps = 23/290 (7%)

Query: 97  EGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV------- 149
            G    +++ G       E + R  P  +V V       L E+L      +         
Sbjct: 54  RGFRGRIILGGPQISYAAEGVERLYPDADVFVRGFAEAALVEVLSSTARKRIQGVVYRGG 113

Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLT--IQEGCDKFCTFCVVPYTR---GIEIS 204
            D        F+                +F+    Q GC   C+FC           + S
Sbjct: 114 FDRGRQANINFDETPSPWLDGTFHIEPGSFVRWETQRGCPFRCSFCQHREAGQSVPRQRS 173

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
            S  ++  E    ++ GV EI +L    N+    G  G + + + LL   S++    RL 
Sbjct: 174 ES-GRIGREIELFVERGVREIAVLDPVFNSG---GPTGARRS-TRLLRRFSDVGYRGRLS 228

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
                P  + D  I A   LD     L   +Q+   R  K + R +        +   R 
Sbjct: 229 LQC-RPEHVDDDFIDACAALD---TCLEFGLQTTERREWKPIQRGNKLETVDATLSACRD 284

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
               +      I G P +T + F  ++    +       +F      GT 
Sbjct: 285 K--GVDHQVSLIFGLPEQTVESFERSLAWCLEREVPVIKAFPLMLLRGTE 332


>gi|30249460|ref|NP_841530.1| lipoyl synthase [Nitrosomonas europaea ATCC 19718]
 gi|47117196|sp|Q82UJ5|LIPA_NITEU RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|30138823|emb|CAD85400.1| Lipoate synthase [Nitrosomonas europaea ATCC 19718]
          Length = 314

 Score = 63.8 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 37/208 (17%), Positives = 69/208 (33%), Gaps = 12/208 (5%)

Query: 161 ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN 220
           E  S  + G    RG   F+ + + C + C FC V    G   +    + +  A  +   
Sbjct: 62  EEASCPNIGECFGRGTATFMILGDLCTRRCPFCDV--AHGRPHAPDPDEPMHLANSIAVL 119

Query: 221 GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD-MSDCLIK 279
            +  + +   +    R    DG    F+D + ++       R+       R  +   L K
Sbjct: 120 KLNYVVITSVD----RDDLRDGGAQHFADCIRAIRTQSPQTRIEILVPDFRGRLEVALEK 175

Query: 280 AHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGF 339
                  +M +    V     R+ K            Q++   ++  P I   S  ++G 
Sbjct: 176 LSACPPDVMNHNLETV----PRLYKQCRPGADYMHSLQLLKDFKAAFPHIPTKSGLMLGL 231

Query: 340 PGETDDDFRATMDLVDKIGYAQAFSFKY 367
            GETD++    M  +           +Y
Sbjct: 232 -GETDEEIIEVMRDLRAHQVDMLTVGQY 258


>gi|162456922|ref|YP_001619289.1| hypothetical protein sce8639 [Sorangium cellulosum 'So ce 56']
 gi|161167504|emb|CAN98809.1| hypothetical protein sce8639 [Sorangium cellulosum 'So ce 56']
          Length = 648

 Score = 63.8 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 43/263 (16%), Positives = 76/263 (28%), Gaps = 35/263 (13%)

Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSLS 208
           +D  Y +          D        V   +    GC   CTFC +    G  I SRS  
Sbjct: 295 MDALYDLPFTRVPHWSYDAPIPAYETVKHSVVTMRGCFGGCTFCSITEHEGRVIQSRSAD 354

Query: 209 QVVDEARKLIDNGVCEITLL---GQNVNAWRGKGLD----------------------GE 243
            ++ E R L         L    G   N ++ +  D                       +
Sbjct: 355 SILREVRALRRMDGFRGVLSDLGGPTANMYQMRCKDEAIENACRRLSCVFPEVCENLNTD 414

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTT---SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300
                 L+ ++ E +G+ ++   +       + S   I+           L +  +    
Sbjct: 415 HGPLLKLMKAVREEQGIKKVFIASGVRYDLAERSPEFIEELATH-HTGGQLSVAPEHNKK 473

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIA----ISSDFIVGFPGETDDDFRATMDLVDK 356
            +L  M +      Y +  ++ R    +      +   FI G PG T  D       + K
Sbjct: 474 DVLDKMKKPG-IESYERFAEQFRCASEEAGKNQFLVPYFISGHPGSTLRDMVDLAIYLKK 532

Query: 357 IGYAQAFSFKYSPRLGTPGSNML 379
            G        + P   +  + M 
Sbjct: 533 SGMRPRQVQDFIPTPMSMAACMY 555


>gi|159025963|emb|CAO88753.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 521

 Score = 63.8 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 52/337 (15%), Positives = 108/337 (32%), Gaps = 36/337 (10%)

Query: 54  ERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAE 113
           E  +  +  DL++++   I++K            + L    ++ G    V V G    + 
Sbjct: 58  ETASDWEWCDLVIISAMIIQKK----------DFQELIAKGLQLGK--KVAVGGPYPTSY 105

Query: 114 GEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRK 173
            E  + +    + ++  +    +P  L     G+       S +       I        
Sbjct: 106 PE--VAQKAGADYLILDEGELTIPLFLAALERGEPSGVFRASEKPDVTMTPIARYDLLDL 163

Query: 174 RGVTAF-LTIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVCEITLLGQN 231
               A  +    GC   C FC +    G +  +++  Q++ E   L   G      +  +
Sbjct: 164 DAYLAITVQFSRGCPFQCEFCDIINLYGRKPRTKTPEQMLAELETLYQLGWRRYIFVVDD 223

Query: 232 VNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD------MSDCLIKAHGDLD 285
                     G K      L  L  I  + + +Y      +          LI+      
Sbjct: 224 -------NFIGNKRNAKVFLREL--IPWMEQRQYPFKLITEASLNLAEDSELIELMVKAG 274

Query: 286 VLMPYLHLPVQSGSDRILKSMNR-RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETD 344
            ++  + + +++     L  +N+ ++T     +   +I  +   + I S FI+GF  E  
Sbjct: 275 FML--VFMGIETPDTDSLMGINKVQNTRQSLIESCHKITRM--GLQIMSGFIIGFDNEKP 330

Query: 345 DDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
              +   D + +    Q           T   N L+Q
Sbjct: 331 GAGQRIKDFIMEASIPQGQFSLLQALQNTALWNRLQQ 367


>gi|90413154|ref|ZP_01221150.1| putative Fe-S oxidoreductase [Photobacterium profundum 3TCK]
 gi|90325845|gb|EAS42297.1| putative Fe-S oxidoreductase [Photobacterium profundum 3TCK]
          Length = 314

 Score = 63.8 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 30/116 (25%), Positives = 48/116 (41%), Gaps = 10/116 (8%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +L L +Q+ +D+ LK +NR H    Y  I  R R++   I + +  IVG PG+T +D   
Sbjct: 141 WLELGLQTANDKTLKRINRGHDFACYENITKRARAM--GIKVCTHLIVGLPGDTKEDNLE 198

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQ-KKLREQQVS 404
           T+     +G             G+  +          KA+RL  L  +   E    
Sbjct: 199 TLKRTIDVGTDGIKLHPLHIVEGSIMAKAW-------KADRLEALSLETYTEIAAE 247


>gi|163804078|ref|ZP_02197872.1| hypothetical protein 1103602000519_AND4_04308 [Vibrio sp. AND4]
 gi|159172112|gb|EDP57054.1| hypothetical protein AND4_04308 [Vibrio sp. AND4]
          Length = 78

 Score = 63.8 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 15/42 (35%), Positives = 22/42 (52%)

Query: 427 KLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           +L  R+   + V        IG  + V+ITDV  ++L GELV
Sbjct: 3   ELRARTENNRVVNFEGSADLIGQFVDVKITDVFANSLRGELV 44


>gi|75676461|ref|YP_318882.1| Fe-S oxidoreductase [Nitrobacter winogradskyi Nb-255]
 gi|74421331|gb|ABA05530.1| Fe-S oxidoreductase [Nitrobacter winogradskyi Nb-255]
          Length = 553

 Score = 63.8 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 53/328 (16%), Positives = 111/328 (33%), Gaps = 36/328 (10%)

Query: 57  NSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEE 116
              + A+ + ++  HI      +  + + R  +  N        L V + G    A  + 
Sbjct: 71  EDFEWAEAVFVSGMHI----QRQQMNDICRRAHAFN--------LSVALGGPSVSACPD- 117

Query: 117 ILRRSPIVNVVVGPQTYYRLPELLER-----ARFGKRVVDTDYSVEDKFERLSIVDGGYN 171
                P  + +   +      EL+ER     +R   +VV    S  D  +         +
Sbjct: 118 ---YYPSFDYLHVGELGDATDELIERLARDPSRPAAQVVLKTASRLDMDKFPIPAYELAD 174

Query: 172 RKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVC-EITLLG 229
            K      +    GC   C FC +P   G     ++  Q+  E  KL++ G+   +  + 
Sbjct: 175 IKHYFLGSIQYSSGCPYQCEFCDIPGLYGRNPRLKTPEQITRELDKLLECGISGSVYFVD 234

Query: 230 QNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR--LRYTTSHPRDMSDCLIKAHGDLDVL 287
            N          G +    +LL  L E +      LR++     +++          +  
Sbjct: 235 DNFI--------GNRKAALELLPHLIEWQKKTGYVLRFSCEATLNIAKRPEILSQMREAF 286

Query: 288 MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP-DIAISSDFIVGFPGETDDD 346
              +   +++     LK+M++ H       I++ IR++    + + S  I+G   +  + 
Sbjct: 287 FATIFCGIETPDPVALKAMHKDHN--MMVPIMEAIRTLNDYGMEVVSGIILGLDTDKPET 344

Query: 347 FRATMDLVDKIGYAQAFSFKYSPRLGTP 374
            +  ++ +D                 TP
Sbjct: 345 GQHLLEFIDHSRIPLLTINLLQALPKTP 372


>gi|217423068|ref|ZP_03454570.1| B12-binding/radical SAM domain protein [Burkholderia pseudomallei
           576]
 gi|217393976|gb|EEC33996.1| B12-binding/radical SAM domain protein [Burkholderia pseudomallei
           576]
          Length = 647

 Score = 63.8 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 52/312 (16%), Positives = 99/312 (31%), Gaps = 54/312 (17%)

Query: 95  IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF--------- 145
            +   DL V++ G  A     +IL R P  +++V  +    LP +L+             
Sbjct: 98  KRREPDLPVLLGGPHATMLHRQILERFPQFDIIVRYEADEILPAVLDCLEQRTFDVIPGL 157

Query: 146 ----------------GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKF 189
                             +V + D      ++   + D G +  R     +    GC   
Sbjct: 158 SWRATGRGAPLRFTDGKPKVEELDRLPIASYDHYPVDDLGLSMLR-----IEAGRGCPFA 212

Query: 190 CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSD 249
           CTFC        + S  L        +L                +      D        
Sbjct: 213 CTFCSTAGFF--QRSFRLKSAERLVHELDILHRRYRV-------SDFKLDHDMFTVNRHK 263

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
           ++     + G       ++    + + L++   D       L+  V++GS+R+     +R
Sbjct: 264 VMAFCEAVAGRGYRWRASARIDCVDEALLRKMADAG--CVNLYFGVETGSERMQTICRKR 321

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSD--FIVGFPGETDDDFRATMDLVDKIG-----YAQA 362
                  ++++ I +      I +   FI G+P E+  D   T+D++ +         Q 
Sbjct: 322 ----LDLRLVEPILAAADSFGIETTASFITGYPQESGQDQDDTLDMIGRCARRPSCLTQL 377

Query: 363 FSFKYSPRLGTP 374
                 P  GTP
Sbjct: 378 HMLA--PEPGTP 387


>gi|254382706|ref|ZP_04998063.1| coproporphyrinogen III oxidase [Streptomyces sp. Mg1]
 gi|194341608|gb|EDX22574.1| coproporphyrinogen III oxidase [Streptomyces sp. Mg1]
          Length = 416

 Score = 63.8 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 52/245 (21%), Positives = 89/245 (36%), Gaps = 33/245 (13%)

Query: 186 CDKFCTFCVV-PYTRGIEI-------SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG 237
           C   C +C    YT            SR      + A  LID       +LG +    R 
Sbjct: 45  CATRCGYCDFNTYTATELRGSGGVLASRE-----NYADTLIDEVRLARKVLGDDPRPVRT 99

Query: 238 KGLDGEKCTFS---DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL------- 287
             + G   T     DL+  L+ I    R  +  +   +++        D   L       
Sbjct: 100 VFVGGGTPTLLPAGDLVRMLAAI----RDEFGLAEDAEVTTEANPESVDPRYLEELRAGG 155

Query: 288 MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDF 347
              +   +QS    +LK ++R HT       +   R+   +  ++ D I G PGE+DDD+
Sbjct: 156 FNRVSFGMQSARQHVLKVLDRTHTPGRPEACVAEARAAGFE-HVNLDLIYGTPGESDDDW 214

Query: 348 RATMDLVDKIGYAQAFSFKYSPRLGTPGSN--MLEQVD---ENVKAERLLCLQKKLREQQ 402
           RA+++     G     ++      GT  +      +V    ++V A+R L     + E  
Sbjct: 215 RASLEAALGAGPDHVSAYALIVEEGTQLARRIRRGEVPMTDDDVHADRYLIADSVMAEAG 274

Query: 403 VSFND 407
            S+ +
Sbjct: 275 YSWYE 279


>gi|16331221|ref|NP_441949.1| hypothetical protein slr0320 [Synechocystis sp. PCC 6803]
 gi|1001397|dbj|BAA10019.1| slr0320 [Synechocystis sp. PCC 6803]
          Length = 531

 Score = 63.8 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 49/309 (15%), Positives = 106/309 (34%), Gaps = 30/309 (9%)

Query: 72  IREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSP---IVNVVV 128
           +      +++  L  I        +   D  ++V G       E++  + P   IV+V  
Sbjct: 111 VTSAYYGELWRNLRLINRGLRRAKRYCSDPQIIVGGGAVSVFYEQLKTKLPAGTIVSVGE 170

Query: 129 GPQTYYRL----------PELLERARFGKRVVDTDYSVE-------DKFERLSIVDGGYN 171
           G     +             ++ R++   R++    S         D  E++      Y 
Sbjct: 171 GETLLEKYLRGQTIEDERCYIVGRSQPRPRLIHEQPSPMVKTACDYDYIEQIWPAFDYYL 230

Query: 172 RKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR-SLSQVVDEARKLIDNGVCEITLLGQ 230
           ++      +  + GC   C +CV     G ++     ++VV E R+L D G+        
Sbjct: 231 QEDDFYLGVQTKRGCPHNCCYCVYTVVEGKQVRINPAAEVVKEMRQLYDRGIRNFWFTDA 290

Query: 231 NVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY-TTSHPRDMSDCLIKAHGDLDVLMP 289
                R    D       +LL +++   G+  + +       +++  L +        M 
Sbjct: 291 QFIPARVFIDD-----VVELLEAIAA-SGMEDIHWAAYIRADNLTPRLCELMVQTG--MN 342

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           Y  + + SGS  +++ M   +      Q    ++    +  +S ++      ET D  R 
Sbjct: 343 YFEIGITSGSQELVRKMRMGYNLRTVLQNCRDLKGAGFNDLVSVNYSFNVIDETLDTIRQ 402

Query: 350 TMDLVDKIG 358
           T+    ++ 
Sbjct: 403 TIAYHRELE 411


>gi|226193605|ref|ZP_03789210.1| B12-binding/radical SAM domain protein [Burkholderia pseudomallei
           Pakistan 9]
 gi|225934487|gb|EEH30469.1| B12-binding/radical SAM domain protein [Burkholderia pseudomallei
           Pakistan 9]
          Length = 647

 Score = 63.8 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 52/312 (16%), Positives = 99/312 (31%), Gaps = 54/312 (17%)

Query: 95  IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF--------- 145
            +   DL V++ G  A     +IL R P  +++V  +    LP +L+             
Sbjct: 98  KRREPDLPVLLGGPHATMLHRQILERFPQFDIIVRYEADEILPAVLDCLEQRTFDVIPGL 157

Query: 146 ----------------GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKF 189
                             +V + D      ++   + D G +  R     +    GC   
Sbjct: 158 SWRATGRGAPLRFTDGKPKVEELDRLPIASYDHYPVDDLGLSMLR-----IEAGRGCPFA 212

Query: 190 CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSD 249
           CTFC        + S  L        +L                +      D        
Sbjct: 213 CTFCSTAGFF--QRSFRLKSAERLVHELDILHRRYRV-------SDFKLDHDMFTVNRHK 263

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
           ++     + G       ++    + + L++   D       L+  V++GS+R+     +R
Sbjct: 264 VMAFCEAVAGRGYRWRASARIDCVDEALLRKMADAG--CVNLYFGVETGSERMQTICRKR 321

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSD--FIVGFPGETDDDFRATMDLVDKIG-----YAQA 362
                  ++++ I +      I +   FI G+P E+  D   T+D++ +         Q 
Sbjct: 322 ----LDLRLVEPILAAADSFGIETTASFITGYPQESGQDQDDTLDMIGRCARRPSCLTQL 377

Query: 363 FSFKYSPRLGTP 374
                 P  GTP
Sbjct: 378 HMLA--PEPGTP 387


>gi|30023013|ref|NP_834644.1| lipoyl synthase [Bacillus cereus ATCC 14579]
 gi|46576976|sp|Q816A0|LIPA_BACCR RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|29898573|gb|AAP11845.1| Lipoic acid synthetase [Bacillus cereus ATCC 14579]
          Length = 297

 Score = 63.8 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 38/214 (17%), Positives = 77/214 (35%), Gaps = 13/214 (6%)

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           ++V ++ +  +I +    RK     F+ +   C + C FC V      E+   L +    
Sbjct: 37  HTVCEEAKCPNIHECWAVRK--TATFMILGAVCTRACRFCAVKTGLPTEL--DLQEPERV 92

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
           A  ++  G+  + +        R    DG    F++ + ++        +    S    +
Sbjct: 93  ADSVVQMGLKHVVITAV----ARDDLKDGGAAVFAETVRAVRRKNPFTSIEVLPSDMGGV 148

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
            + L         ++ +    V+  SD     +  R       + + R + ++PDI   S
Sbjct: 149 EENLKMLMDAKPDILNHNIETVRRLSD----RVRARAKYERSLEFLRRAKEMQPDIPTKS 204

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
             +VG  GET +D    MD +           +Y
Sbjct: 205 SIMVGL-GETREDLIEAMDDLRANNVDILTLGQY 237


>gi|76817304|ref|YP_336692.1| radical SAM domain/B12 binding domain-containing protein
           [Burkholderia pseudomallei 1710b]
 gi|254262924|ref|ZP_04953789.1| B12-binding/radical SAM domain protein [Burkholderia pseudomallei
           1710a]
 gi|76581777|gb|ABA51251.1| radical SAM domain/B12 binding domain protein [Burkholderia
           pseudomallei 1710b]
 gi|254213926|gb|EET03311.1| B12-binding/radical SAM domain protein [Burkholderia pseudomallei
           1710a]
          Length = 651

 Score = 63.8 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 52/312 (16%), Positives = 99/312 (31%), Gaps = 54/312 (17%)

Query: 95  IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF--------- 145
            +   DL V++ G  A     +IL R P  +++V  +    LP +L+             
Sbjct: 102 KRREPDLPVLLGGPHATMLHRQILERFPQFDIIVRYEADEILPAVLDCLEQRTFDVIPGV 161

Query: 146 ----------------GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKF 189
                             +V + D      ++   + D G +  R     +    GC   
Sbjct: 162 SWRATGRGAPLRFTDGKPKVEELDRLPIASYDHYPVDDLGLSMLR-----IEAGRGCPFA 216

Query: 190 CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSD 249
           CTFC        + S  L        +L                +      D        
Sbjct: 217 CTFCSTAGFF--QRSFRLKSAERLVHELDILHRRYRV-------SDFKLDHDMFTVNRHK 267

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
           ++     + G       ++    + + L++   D       L+  V++GS+R+     +R
Sbjct: 268 VMAFCEAVAGRGYRWRASARIDCVDEALLRKMADAG--CVNLYFGVETGSERMQTICRKR 325

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSD--FIVGFPGETDDDFRATMDLVDKIG-----YAQA 362
                  ++++ I +      I +   FI G+P E+  D   T+D++ +         Q 
Sbjct: 326 ----LDLRLVEPILAAADSFGIETTASFITGYPQESGQDQDDTLDMIGRCARRPSCLTQL 381

Query: 363 FSFKYSPRLGTP 374
                 P  GTP
Sbjct: 382 HMLA--PEPGTP 391


>gi|213620447|ref|ZP_03373273.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-2068]
          Length = 79

 Score = 63.8 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 22/42 (52%)

Query: 427 KLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
           +L GR+   + V        IG  + V ITDV  ++L G++V
Sbjct: 4   ELSGRTENNRVVNFEGTPEMIGKFVDVEITDVYPNSLRGKVV 45


>gi|118444247|ref|YP_877101.1| radical SAM protein [Clostridium novyi NT]
 gi|118134703|gb|ABK61747.1| radical SAM protein, TIGR01212 family [Clostridium novyi NT]
          Length = 308

 Score = 63.8 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 34/207 (16%), Positives = 66/207 (31%), Gaps = 18/207 (8%)

Query: 181 TIQEGCDKFCTFCVVPYT------RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA 234
           TI +G    C +C    +      R   IS     + +  +     G           N 
Sbjct: 42  TISKG---GCIYCSERGSGDFAGDRNFSISSQFDDIKEMMKNKWKKGKYIAYFQA-YTNT 97

Query: 235 WRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP 294
           +        K   +     +  +    R    +    ++           D +  ++ L 
Sbjct: 98  YAPVEELRRKYEEAINEEGVVALAIATRPDCLSDEVVELISQF------NDRVYTWVELG 151

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           +Q+ ++   K +NR +    +   + R+R    D+ + +  I G PGE  +D   T+  +
Sbjct: 152 LQTSNECTAKLINRGYNLPIFEDALTRLREKNIDVVVHT--IFGLPGEDREDMLNTIRYL 209

Query: 355 DKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
            K               GTP   + EQ
Sbjct: 210 RKKDIQGIKIHLLHLLKGTPMVKLYEQ 236


>gi|117620976|ref|YP_857754.1| lipoyl synthase [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
 gi|166226342|sp|A0KNA3|LIPA_AERHH RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|117562383|gb|ABK39331.1| lipoic acid synthetase [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
          Length = 321

 Score = 63.8 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 29/182 (15%), Positives = 66/182 (36%), Gaps = 10/182 (5%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V    G  ++    +    A  + + G+  + +   +    R    DG   
Sbjct: 94  CTRRCPFCDV--AHGRPLALDPDEPKKLALTIKEMGLKYVVITSVD----RDDLRDGGAQ 147

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
            F+D +  + E     R+   T   R   +  ++   +     P +       + R+ + 
Sbjct: 148 HFADCIKQIREHSPQTRIEILTPDFRGRMEQALEVFRETP---PDVFNHNLETAPRMYRV 204

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
                      +++ RI+ + P +   S  ++G  GET+++    +  + + G       
Sbjct: 205 ARPGADYKWSLELLRRIKEMHPHVPTKSGVMMGL-GETNEEIVQVLKDLREHGVNMLTLG 263

Query: 366 KY 367
           +Y
Sbjct: 264 QY 265


>gi|148266345|ref|YP_001233051.1| radical SAM domain-containing protein [Geobacter uraniireducens
           Rf4]
 gi|146399845|gb|ABQ28478.1| Radical SAM domain protein [Geobacter uraniireducens Rf4]
          Length = 498

 Score = 63.8 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 53/320 (16%), Positives = 109/320 (34%), Gaps = 25/320 (7%)

Query: 57  NSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEE 116
             +  AD + ++   I+ K+A++    + R R L    +  G     +   C        
Sbjct: 61  EDLAWADYVFISAMTIQRKSAQE---VIARCRQLGVKTVAGGP----LFTTCH------- 106

Query: 117 ILRRSPIVNVVVGPQTYYRLPELLERARFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRG 175
                P V+ +V  +    LP  LE  R G+ R +  D    +  E    + G  + ++ 
Sbjct: 107 --EDFPDVDHLVLNEAELTLPPFLEDLRKGEARHLYADERRANLVETPIPLWGLIDVRKY 164

Query: 176 VTAFLTIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVCEITLLGQNVNA 234
               +    GC   C FC +    G +  ++ LSQ++ E   L   G      +  +   
Sbjct: 165 AAMNIQYSRGCPFDCEFCDITGLFGRKPRTKRLSQLITELDSLHALGWHGAIFIVDD--N 222

Query: 235 WRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP 294
           + G  +  ++     L+  + E           S       CL++    +      + + 
Sbjct: 223 FIGDRVKLKEEVLPALIDWMEEKGRPFYFYTEASIDLADDGCLMELM--VRAGFEEVFIG 280

Query: 295 VQSGSDRILKSMNRRHTA-YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
           +++  +  L    +      +    + R++     + +   FIVGF  +    F   +  
Sbjct: 281 IETPHEDGLAESGKVQNRNRDMLASVKRMQQA--GLQVHGGFIVGFDSDPPAIFDRQICF 338

Query: 354 VDKIGYAQAFSFKYSPRLGT 373
           + + G   A         GT
Sbjct: 339 IQESGIVTAMVGMLIALRGT 358


>gi|332710593|ref|ZP_08430538.1| Fe-S oxidoreductase [Lyngbya majuscula 3L]
 gi|332350648|gb|EGJ30243.1| Fe-S oxidoreductase [Lyngbya majuscula 3L]
          Length = 365

 Score = 63.8 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 33/208 (15%), Positives = 69/208 (33%), Gaps = 17/208 (8%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK 238
           +    GC   C FC +    G +  +++ +QV+ E   L + G      +  +       
Sbjct: 11  VQFSRGCPFECEFCDISVRYGRKPRTKTPAQVLAELETLYNLGWRLPVFIVDD------- 63

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM----SDCLIKAHGDLDVLMPYLHLP 294
              G K     LL  L+         +  S    +     D L++    +      + + 
Sbjct: 64  NFIGNKRHVKLLLQELAPWMAEHGYPFPLSTEASLNLAEDDELLELM--IAANFSSVFVG 121

Query: 295 VQSGSDRILKSMNRR-HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
           +++ +   L    +  +T       +++I   R  + + + FI+G  GE        +D 
Sbjct: 122 IETPNTDSLTLTKKHQNTRQPLADAVEKI--NRAGLRVMAGFIIGLDGEKPGAGDRIIDF 179

Query: 354 VDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           V+                 T   + L+Q
Sbjct: 180 VEATAIPHTVFSMLQALPNTALWDRLKQ 207


>gi|319785906|ref|YP_004145381.1| lipoic acid synthetase [Pseudoxanthomonas suwonensis 11-1]
 gi|317464418|gb|ADV26150.1| lipoic acid synthetase [Pseudoxanthomonas suwonensis 11-1]
          Length = 336

 Score = 63.8 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 37/207 (17%), Positives = 71/207 (34%), Gaps = 8/207 (3%)

Query: 161 ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN 220
           E  S  +       G   F+ + E C + C+FC V    G        + V+    + D 
Sbjct: 81  EEASCPNIHECFGHGTATFMILGEVCTRRCSFCDV--AHGRPKPPDPQEPVNLGNTVADM 138

Query: 221 GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKA 280
           G+  + +   +    R    DG    F D + ++ E     R+   T   R     + +A
Sbjct: 139 GLKYVVVTSVD----RDDLRDGGAQHFVDCIAAIRERAPGTRIEILTPDFRG-KGRMERA 193

Query: 281 HGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFP 340
            G L    P +          + +++           ++   ++  P I   S  ++G  
Sbjct: 194 LGILAQNPPDVFNHNIETVPDLYRNVRPGADYQWSLTLLKEFKAQHPAIPTKSGIMLGL- 252

Query: 341 GETDDDFRATMDLVDKIGYAQAFSFKY 367
           GET +  +AT+  +           +Y
Sbjct: 253 GETMEQVQATLRDLRAHDVDMVTIGQY 279


>gi|256826977|ref|YP_003150936.1| Fe-S oxidoreductase [Cryptobacterium curtum DSM 15641]
 gi|256583120|gb|ACU94254.1| Fe-S oxidoreductase [Cryptobacterium curtum DSM 15641]
          Length = 495

 Score = 63.8 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 58/346 (16%), Positives = 103/346 (29%), Gaps = 48/346 (13%)

Query: 57  NSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEE 116
           + + DAD+I L+       A                  I++    ++++ G  A    EE
Sbjct: 61  DDVLDADVICLS--IFTFSANRGYEL---------ADYIRQHSSAVIIIGGLHATLCAEE 109

Query: 117 ILRRSPIVNVVVGPQTYYRLPELLERA------------RFGKRVVDTDYSVEDKFERLS 164
            L  +  V    G ++  RL   LE              R G+   DT   +    E + 
Sbjct: 110 ALAHADYVLTGEGDESLPRLVAALETHTVTDGIPGVYYWRAGRPTCDTPAVLPHDIETIP 169

Query: 165 IVDGGYNRK-----RGVTAFLTIQEGCDKFCTFCVVPYTRGI-EISRSLSQVVDEARKLI 218
                Y  K       + A +    GC   C +C +    G     R+   VV++ R+ I
Sbjct: 170 DRTLLYRFKEMAGHSTIWAQVHASRGCPYHCDYCSLVAAFGSGVRCRAPETVVEDIRQAI 229

Query: 219 D-------NGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPR 271
           D            + +   N  A R   +         +L +L E            +  
Sbjct: 230 DFFDTGHHRLARMLWITDDNFFANRSWAI--------SVLQALIESDINYTFTIQARYEV 281

Query: 272 DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAI 331
              D ++        +   + + ++   D   +  ++  T  +  Q +  I+  R  + +
Sbjct: 282 GFDDEMLDLLARAGFI--EIAMGIEFLEDEAFELYHKTSTYSQIEQSVANIK--RHGLRV 337

Query: 332 SSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
              FIVG             D V                 GTP   
Sbjct: 338 RGLFIVGADNHEVGVGDRLADFVISHDIDGVLVQSMYFIPGTPVYK 383


>gi|218885343|ref|YP_002434664.1| beta tubulin, autoregulation binding site [Desulfovibrio vulgaris
           str. 'Miyazaki F']
 gi|218756297|gb|ACL07196.1| Beta tubulin, autoregulation binding site [Desulfovibrio vulgaris
           str. 'Miyazaki F']
          Length = 897

 Score = 63.8 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 40/234 (17%), Positives = 78/234 (33%), Gaps = 22/234 (9%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGK 238
           L I  GC + C FC           RS   +     + +   G  +++ L  +       
Sbjct: 283 LEIGRGCTRGCRFCQAGIIYRPARERSTENLHALLEECLSQTGYDDVSFLSLSTG----- 337

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
                K  F   +   ++ +  V L        D    +++    +        L  ++G
Sbjct: 338 DFSALKQMFLSTVDRCAQEQVAVSLPSLRVGSIDD--EIMRRMAGIRR--TGATLAPEAG 393

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           S R+   +N+  T       + ++        +   F++G P ET +D  A +DL  K+ 
Sbjct: 394 SQRLRDVINKGVTEEGLMLHVQKLFEHGWQ-QVKLYFMIGLPTETREDLDAIVDLCRKVR 452

Query: 359 ----------YAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQ 402
                        A    + P+  TP      Q+      ER+  L  + + ++
Sbjct: 453 DAAGPGIRRLQVTAAISPFVPKPHTP-FQWERQLSLEEIRERIGYLLSRFKGEK 505


>gi|126444059|ref|YP_001061053.1| Fe-S oxidoreductase [Burkholderia pseudomallei 668]
 gi|126223550|gb|ABN87055.1| Fe-S oxidoreductase [Burkholderia pseudomallei 668]
          Length = 647

 Score = 63.8 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 52/312 (16%), Positives = 99/312 (31%), Gaps = 54/312 (17%)

Query: 95  IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF--------- 145
            +   DL V++ G  A     +IL R P  +++V  +    LP +L+             
Sbjct: 98  KRREPDLPVLLGGPHATMLHRQILERFPQFDIIVRYEADEILPAVLDCLEQRTFDVIPGL 157

Query: 146 ----------------GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKF 189
                             +V + D      ++   + D G +  R     +    GC   
Sbjct: 158 SWRATGRGAPLRFTDGKPKVEELDRLPIASYDHYPVDDLGLSMLR-----IEAGRGCPFA 212

Query: 190 CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSD 249
           CTFC        + S  L        +L                +      D        
Sbjct: 213 CTFCSTAGFF--QRSFRLKSAERLVHELDILHRRYRV-------SDFKLDHDMFTVNRHK 263

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
           ++     + G       ++    + + L++   D       L+  V++GS+R+     +R
Sbjct: 264 VMAFCEAVAGRGYRWRASARIDCVDEALLRKMADAG--CVNLYFGVETGSERMQTICRKR 321

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSD--FIVGFPGETDDDFRATMDLVDKIG-----YAQA 362
                  ++++ I +      I +   FI G+P E+  D   T+D++ +         Q 
Sbjct: 322 ----LDLRLVEPILAAADSFGIETTASFITGYPQESGQDQDDTLDMIGRCARRPSCLTQL 377

Query: 363 FSFKYSPRLGTP 374
                 P  GTP
Sbjct: 378 HMLA--PEPGTP 387


>gi|319428278|gb|ADV56352.1| Radical SAM domain protein [Shewanella putrefaciens 200]
          Length = 790

 Score = 63.8 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 52/339 (15%), Positives = 104/339 (30%), Gaps = 62/339 (18%)

Query: 116 EILRRSPIVNVVVGPQTYYRLPELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKR 174
           E        + ++  +        L +    + V V+      +  E  ++ D  Y R  
Sbjct: 301 EDKYLYAHASRILHQEQNPGCARALFQPHGDRGVWVNPPAWPLNTDEMDAVFDLPYKRVP 360

Query: 175 GV-------------TAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDN 220
                             + I  GC   C+FC +    G  I SRS   ++ E + + D 
Sbjct: 361 HPAYGKAKIPAYDMIKTSINIMRGCFGGCSFCSITEHEGRIIQSRSQESIIKEIKDIQDK 420

Query: 221 --GVCEIT--LLGQNVNAWR----------------------GKGLDGEKCTFSDLLYSL 254
             G   +   L G   N +R                         L  +     DL  + 
Sbjct: 421 VPGFTGVISDLGGPTANMYRLGCTSEKAEKTCRRLSCVFPSICGHLGTDHKHTIDLYRAA 480

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRRHTA 312
             + G+ ++   +    D++        +L    +  YL +  +   +  L  M +    
Sbjct: 481 RAVPGIKKILIASGVRYDLAIEDPAYVKELVQHHVGGYLKIAPEHTEEGPLSKMMKPGMG 540

Query: 313 YE--YRQIIDRI-RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY--AQAFSFKY 367
               ++++ D+  +    +  +   FI   PG TD+D       + +  +   Q  +F  
Sbjct: 541 AYDKFKELFDKYSKEAGKEQFLIPYFISAHPGTTDEDMVNLALWLKERKFKLDQVQNFYP 600

Query: 368 SPRLG------TPGSNMLE--------QVDENVKAERLL 392
           SP         T  +++           V +  +  RL 
Sbjct: 601 SPMANATTIYHTELNSLKNVKHTSEVVPVPKKGRQRRLH 639


>gi|120600609|ref|YP_965183.1| hypothetical protein Sputw3181_3824 [Shewanella sp. W3-18-1]
 gi|146294765|ref|YP_001185189.1| hypothetical protein Sputcn32_3682 [Shewanella putrefaciens CN-32]
 gi|120560702|gb|ABM26629.1| Radical SAM N-terminal domain protein [Shewanella sp. W3-18-1]
 gi|145566455|gb|ABP77390.1| Radical SAM N-terminal domain protein [Shewanella putrefaciens
           CN-32]
          Length = 790

 Score = 63.8 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 52/339 (15%), Positives = 104/339 (30%), Gaps = 62/339 (18%)

Query: 116 EILRRSPIVNVVVGPQTYYRLPELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKR 174
           E        + ++  +        L +    + V V+      +  E  ++ D  Y R  
Sbjct: 301 EDKYLYAHASRILHQEQNPGCARALFQPHGDRGVWVNPPAWPLNTDEMDAVFDLPYKRVP 360

Query: 175 GV-------------TAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDN 220
                             + I  GC   C+FC +    G  I SRS   ++ E + + D 
Sbjct: 361 HPAYGKAKIPAYDMIKTSINIMRGCFGGCSFCSITEHEGRIIQSRSQESIIKEIKDIQDK 420

Query: 221 --GVCEIT--LLGQNVNAWR----------------------GKGLDGEKCTFSDLLYSL 254
             G   +   L G   N +R                         L  +     DL  + 
Sbjct: 421 VPGFTGVISDLGGPTANMYRLGCTSEKAEKTCRRLSCVFPSICGHLGTDHKHTIDLYRAA 480

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRRHTA 312
             + G+ ++   +    D++        +L    +  YL +  +   +  L  M +    
Sbjct: 481 RAVPGIKKILIASGVRYDLAIEDPAYVKELVQHHVGGYLKIAPEHTEEGPLSKMMKPGMG 540

Query: 313 YE--YRQIIDRI-RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY--AQAFSFKY 367
               ++++ D+  +    +  +   FI   PG TD+D       + +  +   Q  +F  
Sbjct: 541 AYDKFKELFDKYSKEAGKEQFLIPYFISAHPGTTDEDMVNLALWLKERKFKLDQVQNFYP 600

Query: 368 SPRLG------TPGSNMLE--------QVDENVKAERLL 392
           SP         T  +++           V +  +  RL 
Sbjct: 601 SPMANATTIYHTELNSLKNVKHTSEVVPVPKKGRQRRLH 639


>gi|332886166|gb|EGK06410.1| hypothetical protein HMPREF9456_00284 [Dysgonomonas mossii DSM
           22836]
          Length = 603

 Score = 63.8 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 50/320 (15%), Positives = 108/320 (33%), Gaps = 58/320 (18%)

Query: 116 EILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRG 175
           E L ++    +V           ++++      +++  Y    + E  +  D  Y R   
Sbjct: 230 EKLNQAKNFKIVEEQSNMINASRIIQKYGEQSVIINPPYPPMSEKEMDASFDLPYTRLPH 289

Query: 176 VT-------AFLTI------QEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDNG 221
                    AF  I        GC   C FC +   +G  I SRS   ++ E +++ D  
Sbjct: 290 PKYKGKTIPAFEMIKFSVNMHRGCFGGCAFCTISAHQGKFIASRSKESILKEVKEITDMP 349

Query: 222 VCEITLL---GQNVNAWRGKGLDGEKC----------------------TFSDLLYSLSE 256
             +  L    G + N ++ KG D   C                         D+  ++ +
Sbjct: 350 DFKGYLSDLGGPSANMYKMKGKDENICAKCKRPSCIHPKICKNLNVDHSHLLDIYKAVDK 409

Query: 257 IKGLVRLRYTTSHPRDM-----SDCLIKAHGDL---DVLMPYLH----LPVQSGSDRILK 304
           I  + +    +    DM      D  +    +    ++++ ++     +  +  SD++L 
Sbjct: 410 IPKIKKSFIGSGVRYDMLLHRNEDDRLNKISEEYIKELIVNHVSGRLKVAPEHTSDKVLS 469

Query: 305 SMNRR-----HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
            M +      +T  +  + I++   ++  +     FI   PG T+ D          +G+
Sbjct: 470 YMRKPSFEQFYTFQKIFEKINKESGLKQQLIPY--FISSHPGCTEIDMAELAVATKPLGF 527

Query: 360 AQAFSFKYSPRLGTPGSNML 379
                  ++P   T  + + 
Sbjct: 528 KLEQIQDFTPSPMTVATEIY 547


>gi|302872012|ref|YP_003840648.1| Radical SAM domain protein [Caldicellulosiruptor obsidiansis OB47]
 gi|302574871|gb|ADL42662.1| Radical SAM domain protein [Caldicellulosiruptor obsidiansis OB47]
          Length = 341

 Score = 63.8 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 42/235 (17%), Positives = 82/235 (34%), Gaps = 16/235 (6%)

Query: 173 KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV-VDEARKLIDNGVCEITLLGQN 231
           K+ +      Q  C   C FC         IS    +V +D  ++ I+ G+   +     
Sbjct: 2   KQRILPIFIPQYACPFNCIFC-----NQKIISGEKEEVSLDRIKRQIEQGLKINSDEHVE 56

Query: 232 VNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL 291
           + A+ G         F   L  L+     ++    ++ P  + +  ++     +  +  +
Sbjct: 57  L-AYYGGNFTAIDIDFQKKLLELANSFKKIKSIRISTRPDCIDEERLRFLKLYN--VKTI 113

Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351
            L +QS  D +L +  R HTA   +  +  I+       +    +VG P  T +    T 
Sbjct: 114 ELGIQSMFDDVLNACARGHTAQHSKNAMAMIKKF--GFLLGVQVMVGLPKSTLEKDIETA 171

Query: 352 DLVDKIGYAQAFSFKYSPRLGTPGSNM-----LEQVDENVKAERLLCLQKKLREQ 401
            ++       A  +      GT  + M      E +  N   ER   ++    E+
Sbjct: 172 KILTSFSPDIARVYPTLVIEGTYLAKMYQRGEYEPLSLNEAVERCSQIKSIFIEK 226


>gi|240172375|ref|ZP_04751034.1| putative methyltransferase [Mycobacterium kansasii ATCC 12478]
          Length = 433

 Score = 63.8 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 59/328 (17%), Positives = 107/328 (32%), Gaps = 45/328 (13%)

Query: 79  KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPE 138
                   +  L     +    + + +   +A    E IL      + VV         E
Sbjct: 50  SCIDTFAEVLWLARRARQCWEGVQIALGNVIATLNYERILGEYDCFDFVVVGDGEVTFTE 109

Query: 139 LLERARFGKRV----------------------VDTDYSVEDKFERLSIVDGGYNRKRGV 176
           L      G  V                      VD D       E L  V G      G 
Sbjct: 110 LALAVANGAGVEGIPGLARRDEQGRIVCSPSGLVDLDELPWPAREELPTVLG-----DGF 164

Query: 177 TAFLTIQEGCDKFCTFCVVP-----YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQN 231
            A +    GC   CTFC          R     +S+  VVDE   L+ +   +   +  +
Sbjct: 165 AASVFTTRGCPYRCTFCGTGAVSAMLGRTSYRVKSVDAVVDEIAYLVSDFDIQFLSITDD 224

Query: 232 VNAWRGKGLDGEKCTF-SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY 290
           +   +  G       F S +L    ++  ++ +R  +    D+   L +A       +  
Sbjct: 225 LFVSKHPGSQQRAVEFASAMLGRGIDVNFMIDIRLDSVVDLDLFKHLHRA------GLRR 278

Query: 291 LHLPVQSGSDRILKSMNRRH--TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFR 348
           + + +++GS   L++  ++      +    I+ ++ +  D+   +  I+  P    ++ R
Sbjct: 279 VFVGLETGSYDQLRAYRKQILSRGQDAADTINALQQLGIDVIPGT--IMFHPTVRPEELR 336

Query: 349 ATMDLVDKIGYAQAFSFKY--SPRLGTP 374
            T  L+    Y Q F F    +P  GTP
Sbjct: 337 ETARLLRATKYTQPFKFMGRITPYPGTP 364


>gi|239908451|ref|YP_002955193.1| hypothetical protein DMR_38160 [Desulfovibrio magneticus RS-1]
 gi|239798318|dbj|BAH77307.1| hypothetical protein [Desulfovibrio magneticus RS-1]
          Length = 491

 Score = 63.8 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 52/311 (16%), Positives = 102/311 (32%), Gaps = 49/311 (15%)

Query: 99  GDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE--------------RAR 144
               +V+ G    A   E +   P+  V+ G    + L +L++              R  
Sbjct: 104 PGATIVLMGDHVTALPRETMENCPVDYVICGGDFDFILADLVDHLDGRPVALPAGVWRRE 163

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGY-----------NRKRGVTAFLTIQEGCDK-FCTF 192
            G+ V     ++    + L  +D              N K    A++     C    CTF
Sbjct: 164 NGEIVDGGLGNLTHNLDELPYIDRELIKWKRYAFKNGNFKYTPGAYVMAGRDCWWGRCTF 223

Query: 193 CVV----PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS 248
           C      P      +S     V +  R + D G+ EI     + +    +G   E+    
Sbjct: 224 CSWTTLFPGATYRTVS-PARHVAEIERLVADYGIREIF----DDSGCFPRGAWLEEFCNL 278

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
            +   L + K ++               L+K          ++ + ++S S   L  + +
Sbjct: 279 LIAKGLHK-KVVMGCNMRVGELTQAQWNLLK-----KANFRFILIGLESMSQDTLNRLKK 332

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ-----AF 363
                +  + +   +     +      +VG+P ET +D R T+D    + +++       
Sbjct: 333 GIKVSQIEETVRMAKKA--GLEPHITTMVGYPWETREDARRTVDFAKSL-FSRGLLNTLQ 389

Query: 364 SFKYSPRLGTP 374
           +    P  GTP
Sbjct: 390 ATIVVPYPGTP 400


>gi|157363633|ref|YP_001470400.1| radical SAM domain-containing protein [Thermotoga lettingae TMO]
 gi|157314237|gb|ABV33336.1| Radical SAM domain protein [Thermotoga lettingae TMO]
          Length = 442

 Score = 63.8 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 54/299 (18%), Positives = 110/299 (36%), Gaps = 22/299 (7%)

Query: 93  SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDT 152
             IK+      VV G +      +  +++   + +        LP L+ +  FGK     
Sbjct: 128 KYIKQIFPKTPVVLGGLYARLYTDHAKKNTNADFIFDK-DLSNLPHLINQ-LFGKT---I 182

Query: 153 DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVD 212
             S++  FE L      Y  K G   FLT   GC   CT+C+        + R   +VV 
Sbjct: 183 GVSMKKWFEELDPAYELYK-KVGYLVFLT-SLGCPYSCTYCISSKLWKKFVQRDPQKVVA 240

Query: 213 EARKLID-NGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT-SHP 270
             ++ +D   V  I      +       L  ++  F  LL  L + +  V        H 
Sbjct: 241 AIKRYVDLFQVKNIVFFDDAI-------LINKERHFMKLLKLLIKEQLKVNYHLPNGLHA 293

Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330
           R + +   K   +       + L  ++  +   ++  + +     R     +++      
Sbjct: 294 RLLDEETAKLMKEAG--FKTIKLGYETSGNLQKETGGKVYDEELVRAAEILLKAGFTKED 351

Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG-TPGSNMLEQ--VDENV 386
           + +  +V  P + +DD    +++  ++G +     +Y+P  G      +++Q  +DE +
Sbjct: 352 VQAYIMVNMPDQKEDDVLKAIEICKQVGIS-VSINEYTPIYGSLDWFKLVDQGAIDEKI 409


>gi|149197223|ref|ZP_01874275.1| hypothetical methyltransferase [Lentisphaera araneosa HTCC2155]
 gi|149139769|gb|EDM28170.1| hypothetical methyltransferase [Lentisphaera araneosa HTCC2155]
          Length = 437

 Score = 63.8 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 45/328 (13%), Positives = 101/328 (30%), Gaps = 38/328 (11%)

Query: 63  DLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSP 122
           DL+V+++            + +    +L  +   +G  + V++ G        E +    
Sbjct: 75  DLVVISS----------FSAQIFEAYDLAKACRIQG--MKVIMGGLHVSLNPHEAMNHC- 121

Query: 123 IVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTI 182
             + +   +      ++L      +     D S ++   + S +             LTI
Sbjct: 122 --DAICLGEGEILWAQILGDFEKDEVKKVYDASGQEYCLQNSPMPAYELLDPSFYNRLTI 179

Query: 183 Q--EGCDKFCTFCV-VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
           Q   GC   C FC            +   +++ E  ++ +           + +    K 
Sbjct: 180 QTSRGCPHSCEFCAGSILLTSKYKQKPAEKILAELDRICELWDRPFIEFADDNSFVNKKF 239

Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD-MSDCLIKAHGDLDVLMPYLHLPVQSG 298
                         L EI+      +T +       +  +            L + ++S 
Sbjct: 240 W----------RELLPEIQKRNIRWFTEADIAVGDDEDFLDLLFQSG--CKELLIGLESP 287

Query: 299 -----SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
                    L++  +      Y++ + RI+     I +++ FI+G     +  F A  D 
Sbjct: 288 VLNGLDGIELRNNWKAKRIETYKENLLRIQQK--GIRVNACFIIGLDSHDERIFDAVYDF 345

Query: 354 VDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
            D+           +P  GT     L++
Sbjct: 346 CDECNVYDVQVTLPTPFPGTELYKRLKK 373


>gi|56964714|ref|YP_176445.1| lipoyl synthase [Bacillus clausii KSM-K16]
 gi|81365539|sp|Q5WDS6|LIPA_BACSK RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|56910957|dbj|BAD65484.1| lipoic acid synthetase [Bacillus clausii KSM-K16]
          Length = 309

 Score = 63.8 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 36/214 (16%), Positives = 75/214 (35%), Gaps = 13/214 (6%)

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           ++V ++    +I +    RK     F+ + + C + C FC V      E+   L +    
Sbjct: 40  HTVCEEARCPNIHECWAVRK--TATFMILGDICTRGCRFCAVKTGLPTEL--DLQEPERV 95

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
           A  +   G+  + +        R    DG    F++ + ++        +    S     
Sbjct: 96  AESVETMGLKHVVITAV----ARDDLKDGGAAVFAETVRAVRRKNPFCTIEVLPSDMLGN 151

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
              L         +M +    V+  + ++      ++      + + R + + PDI   S
Sbjct: 152 ESSLQTLMDARPNIMNHNIETVRRLTPKV--RARAKYDR--TLEFLRRAKEMHPDIPTKS 207

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
             +VG  GET ++   TMD +           +Y
Sbjct: 208 SLMVGL-GETKEEILETMDDLRANNVDILTIGQY 240


>gi|159037769|ref|YP_001537022.1| radical SAM domain-containing protein [Salinispora arenicola
           CNS-205]
 gi|157916604|gb|ABV98031.1| Radical SAM domain protein [Salinispora arenicola CNS-205]
          Length = 499

 Score = 63.8 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 41/263 (15%), Positives = 87/263 (33%), Gaps = 31/263 (11%)

Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGV----------TAFLTIQEGCDKF 189
           +  AR G  V D D      ++ L         +              A +    GC   
Sbjct: 184 VNPARTGDLVWDLDTLPMPAWDLLPNDRYWTIARPHSGLFEPGAELRYATMMTSLGCPFH 243

Query: 190 CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSD 249
           C +C +       +S  + +   ++   +   +  +  LG +        L G+K     
Sbjct: 244 CAYCHIAGEHEGSLSGPIGRFRVKSDDRVLAEIEALKRLGVDNVFIEDDSLLGDKRRGLR 303

Query: 250 LLYS-------LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
           LL         + ++ G+  +             ++ A  +       +++P +SGS   
Sbjct: 304 LLQKVRGAGVTICDLNGINLIHLL--KRWKPDHEVLGALAEAG--FTQINMPFESGS--- 356

Query: 303 LKSMNRRHTAYEYRQIIDR----IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI- 357
           L+ + +  +     +  D     +        I  ++++G+P ET ++   T+ L  +  
Sbjct: 357 LRIIRKYASNKLNVEKADLSGLIVAMKEYGFQIYGNYMMGYPDETLEEIETTIRLAREHV 416

Query: 358 --GYAQAFSFKYSPRLGTPGSNM 378
             G   A  F   P  G P  ++
Sbjct: 417 SYGLDAANFFLVVPLPGAPLFDL 439


>gi|159038505|ref|YP_001537758.1| radical SAM domain-containing protein [Salinispora arenicola
           CNS-205]
 gi|157917340|gb|ABV98767.1| Radical SAM domain protein [Salinispora arenicola CNS-205]
          Length = 625

 Score = 63.8 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 55/323 (17%), Positives = 97/323 (30%), Gaps = 41/323 (12%)

Query: 90  LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG--- 146
           L  +  +   D  V+  G     + E + R  P V+VV+  +      ELL     G   
Sbjct: 71  LAQTFKQINPDGWVIFGGNHVSNQAERVFRMYPAVDVVINGEGEVTFRELLRAYLDGVNK 130

Query: 147 ----------------KRVVDTDYSVEDKFERLSIV--------DGGYNRKRGVTAFLTI 182
                           + V        D  + +                R R   A +  
Sbjct: 131 RDLAAVAGLSYRNAAAETVTTAVRPRIDDLDSIPSPFLNGALDLTDAAGRFRYDVALMET 190

Query: 183 QEGCDKFCTFCVVPYTRG-IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD 241
             GC   C FC      G    + S+ ++  E       GV  I     N     G    
Sbjct: 191 NRGCPYKCAFCYWGGATGQKVRAFSIERLRAELELFGKLGVHTIVACDANFGILPGD--- 247

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTS--HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
                F   +    E  G  R   T+   +  +    +++       +     L +Q+  
Sbjct: 248 ---YDFVKTMIQTRERYGFPRALETSWAKNKSENFYRIVRLMKQAG-MKSSFTLALQTLH 303

Query: 300 DRILKSMNRRH-TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           D  L++M RR+    E+  +   +      +   ++ I G PGET + F    D +    
Sbjct: 304 DGALEAMRRRNMKVNEWEDLTAWL--ADEGLDCYAELIWGAPGETVESFMTGYDKL-ATR 360

Query: 359 YAQAFSFKYSPRLGTPGSNMLEQ 381
            ++   +       T   +  +Q
Sbjct: 361 MSRIAVYPLLLLPNTDYMDKKDQ 383


>gi|266619531|ref|ZP_06112466.1| radical SAM domain protein [Clostridium hathewayi DSM 13479]
 gi|288868942|gb|EFD01241.1| radical SAM domain protein [Clostridium hathewayi DSM 13479]
          Length = 579

 Score = 63.8 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 45/280 (16%), Positives = 100/280 (35%), Gaps = 26/280 (9%)

Query: 99  GDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVED 158
            +  + + G     +  +IL R P V  ++  +      E+L+    G+R   T   V  
Sbjct: 93  PEAEIWLGGPEVSYDAADILEREPNVTGIMMGEGEETFLEVLKHYAEGRRDFFTIDGVAC 152

Query: 159 KFERLSIVDGGYNRKRGVTA----------------FLTIQEGCDKFCTFCVVPYTRGIE 202
           + E+  +V     +   ++A                +     GC   C++C+        
Sbjct: 153 RNEKREVVSRPLKKAADMSAIPFPYEDLHDFEHKIVYYESSRGCPFSCSYCL-SSLDKSV 211

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
             R+L  V  E    +++ V ++  + +  N          K    ++   ++E    V 
Sbjct: 212 RFRNLELVKRELDFFLEHRVPQVKFVDRTFNCS--------KKHTMEVWRHITEHDNGVT 263

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
             +       + +  ++    +   +  L + VQS +   ++ + R+      + +++RI
Sbjct: 264 NFHFEISADLLDEEELELMAQMRPGLIQLEIGVQSTNPDTIREIRRKTDLNRLKSVVERI 323

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
                +I    D I G P E  + FR + + V  +   Q 
Sbjct: 324 HG-FGNIHCHLDLIAGLPYEEYESFRNSFNEVYGMKPDQL 362


>gi|57234892|ref|YP_181095.1| radical SAM domain-containing protein [Dehalococcoides ethenogenes
           195]
 gi|57225340|gb|AAW40397.1| radical SAM domain protein [Dehalococcoides ethenogenes 195]
          Length = 544

 Score = 63.8 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 40/243 (16%), Positives = 88/243 (36%), Gaps = 34/243 (13%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
           + ++ GC   C FC+V           L  ++ +A + +      I L+G  V+      
Sbjct: 239 MEVERGCGHQCRFCLVAGVFCPLRYHPLELLLKQAEEGMLE-RKRIGLVGPVVS------ 291

Query: 240 LDGEKCTFSDLLYSLSEIKGL-VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
                         +S ++G+ V L  ++   + + + ++         +  L +  ++G
Sbjct: 292 ------DHPQATELISRLRGMGVGLSISSLRIKPLPEKMLGELALSG--VSSLAMAPEAG 343

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA-ISSDFIVGFPGETDDDFRATMDLVDKI 357
           S+R+ + + +  T  +  +    +         +   F++G PGETD+D    + L +K 
Sbjct: 344 SERLRRIIRKGITEDDIIRAAALVAEK--GFRQLKFYFMLGLPGETDEDIEEMIKLAEKA 401

Query: 358 GYA----------QAFSFKYSPRLGTP--GSNMLEQVDENVKAERLLCLQKKLREQQVSF 405
                              + P+  TP     M + V   +   RL  ++ +L  Q +  
Sbjct: 402 QQVMSAAGRGVRLSLNIAPFVPKPSTPFQWLGMEDAV---LVKRRLDIIRLRLEGQGIEV 458

Query: 406 NDA 408
              
Sbjct: 459 RAE 461


>gi|241765084|ref|ZP_04763075.1| lipoic acid synthetase [Acidovorax delafieldii 2AN]
 gi|241365276|gb|EER60104.1| lipoic acid synthetase [Acidovorax delafieldii 2AN]
          Length = 326

 Score = 63.8 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 79/221 (35%), Gaps = 12/221 (5%)

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
           + +  ++ +    E  S  + G    +G   F+ + + C + C FC V + R   +    
Sbjct: 62  KDILREHKLHTVCEEASCPNIGECFGKGTATFMIMGDKCTRRCPFCDVGHGRPDPL--DK 119

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
            + ++ A+ +    +  + +   +    R    DG    F + +  + E+    ++   T
Sbjct: 120 DEPLNLAKTIAALKLKYVVITSVD----RDDLRDGGSGHFVECIQRIRELSPATQIEILT 175

Query: 268 SHPRDMSDCLIKAH-GDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
              R   D  ++        +M +        + R+ K             ++ + + + 
Sbjct: 176 PDFRGRDDRALEILKAAPPDVMNHNL----ETAPRLYKEARPGSDYQFSLNLLKKFKELH 231

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           P++   S  +VG  GETD++    M  +           +Y
Sbjct: 232 PNVPTKSGIMVGL-GETDEEILQVMRDMRAHCIDMLTIGQY 271


>gi|121535422|ref|ZP_01667233.1| lipoic acid synthetase [Thermosinus carboxydivorans Nor1]
 gi|121306021|gb|EAX46952.1| lipoic acid synthetase [Thermosinus carboxydivorans Nor1]
          Length = 294

 Score = 63.8 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 33/196 (16%), Positives = 63/196 (32%), Gaps = 16/196 (8%)

Query: 175 GVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA 234
           G   FL +   C + C FC V + R   +     +    A  + + G+  + +       
Sbjct: 57  GTATFLILGNTCTRSCAFCAVDHGRPPAV--DPEEPRRLAAAVAEMGLTHVVVTSVT--- 111

Query: 235 WRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP 294
            R    DG    F+ ++  L ++ G  R+   T   R     L         +       
Sbjct: 112 -RDDLPDGGAGQFAAVINELRKLPGRPRVEVLTPDFRGAPAALATVLAAGPEV-----FA 165

Query: 295 VQSGSDRILKSMNRR---HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351
               +   L    R    +       +    R+ +P   I +  ++G  GE + +  A +
Sbjct: 166 HNVETVPRLYLAVRPGAEYRRSVNL-LAQAARTAKPGTEIKTGIMLGL-GEEEAEVMAVL 223

Query: 352 DLVDKIGYAQAFSFKY 367
           + V   G       +Y
Sbjct: 224 EDVRAAGVTMITLGQY 239


>gi|170724750|ref|YP_001758776.1| hypothetical protein Swoo_0382 [Shewanella woodyi ATCC 51908]
 gi|169810097|gb|ACA84681.1| Radical SAM domain protein [Shewanella woodyi ATCC 51908]
          Length = 763

 Score = 63.8 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 54/304 (17%), Positives = 101/304 (33%), Gaps = 59/304 (19%)

Query: 176 VTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEAR------------------- 215
           +   + I  GC   C+FC +    G  I SRS   +V+E +                   
Sbjct: 375 IKTSINIMRGCFGGCSFCSITEHEGRIIQSRSQESIVNEIKDIQDKVPGFTGVISDLGGP 434

Query: 216 -----------KLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
                      +  +     I+ +  ++                DL  +  ++ G+ ++ 
Sbjct: 435 TANMYHLGCKSEKAEKTCRRISCIFPDICGHMDTDHQPTI----DLYRAARDVPGIKKIL 490

Query: 265 YTTSHPRDMSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRRH--TAYEYRQIID 320
             +    D++    +   +L    +  YL +  +   +  L  M +    T  +++++ D
Sbjct: 491 IASGVRYDLASEDPRYVKELATHHVGGYLKIAPEHTEEGPLNKMMKPGMGTYDKFKELFD 550

Query: 321 RI-RSVRPDIAISSDFIVGFPGETDDDFRATMDLV--DKIGYAQAFSFKYSPRLG----- 372
           +  +       +   FI   PG T++D       +  +K    Q  +F  SP        
Sbjct: 551 KYSKEAGKKQYLIPYFISAHPGTTNEDMVNLALWLKGEKFKLDQVQNFYPSPMANATTIY 610

Query: 373 -TPGSNMLE--QVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG 426
            T  +++       E V   K  R   L K L           +    E LIE  GKEK 
Sbjct: 611 HTELNSLKNVKHTSEQVTVPKKGRQRKLHKALLRYHDEAGWPMI---REALIE-MGKEK- 665

Query: 427 KLVG 430
            L+G
Sbjct: 666 -LIG 668


>gi|163851836|ref|YP_001639879.1| radical SAM domain-containing protein [Methylobacterium extorquens
           PA1]
 gi|163663441|gb|ABY30808.1| Radical SAM domain protein [Methylobacterium extorquens PA1]
          Length = 437

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 34/218 (15%), Positives = 77/218 (35%), Gaps = 14/218 (6%)

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
             R G    +T        + L+        + G    L    GC   C+FC        
Sbjct: 159 AVRDGAAWRETPARPLANLDSLASPYALNLVQHGGLGVLQTYRGCPFTCSFCEWGTMESP 218

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           +  R++  +  E   +  + V    L+          GL+  +  F +L  +  E     
Sbjct: 219 KRVRAVDHLTQEFEAIAGHDVYAALLVD--------AGLNLNRNAFLNLRRAAEESGFFE 270

Query: 262 RLRYTT-SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
           R       +P  +    +     +     Y+ + +QS  + +L  ++R +    + +   
Sbjct: 271 RHGLICEVYPAAVRQEHLDFLATVSNA--YVGIGLQSFDNAVLAHVDRTYDERRFDETFA 328

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           ++ +V    +++ + I+G PG+  + FR   +   ++ 
Sbjct: 329 KLDAV---ASLAVEIILGLPGDNPETFRRNFERARRLP 363


>gi|77920178|ref|YP_357993.1| Fe-S oxidoreductase [Pelobacter carbinolicus DSM 2380]
 gi|77546261|gb|ABA89823.1| Fe-S oxidoreductase [Pelobacter carbinolicus DSM 2380]
          Length = 836

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 41/241 (17%), Positives = 87/241 (36%), Gaps = 28/241 (11%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLID-NGVCEITLLGQNVNAWRGK 238
           + I  GC + C FC   +       R    + D     +  +G  E++LL  +   +   
Sbjct: 258 VEITRGCTRGCRFCQAGFVTRPVRERDPQAIADNIAAALACSGYEEVSLLSLSTGDYSQI 317

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
           G   +          ++       L   +     +++ L++    +        L  ++G
Sbjct: 318 GPLLKGLMDRYRQERVA-------LSLPSLRVGSLTEELMEEVRKVRK--TGFTLAPEAG 368

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA---ISSDFIVGFPGETDDDFRATMDLVD 355
           S+R+ + +N+  T      +++  R+    +    I   F++G P ET++D  A +DL  
Sbjct: 369 SERMRQVINKGITEE---DLLETARAAF-GLGWRVIKLYFMMGLPTETEEDLAAIVDLAA 424

Query: 356 KIGYA----------QAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSF 405
           ++  A                + P+  TP      Q+       R   L+  LR +++  
Sbjct: 425 RVKRAGKGTEGGADVNVSVSTFVPKPHTP-FQWEAQLGVEETLSRQAYLRDALRSKKLRL 483

Query: 406 N 406
            
Sbjct: 484 K 484


>gi|167721925|ref|ZP_02405161.1| radical SAM domain/B12 binding domain protein [Burkholderia
           pseudomallei DM98]
          Length = 651

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 52/312 (16%), Positives = 99/312 (31%), Gaps = 54/312 (17%)

Query: 95  IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF--------- 145
            +   DL V++ G  A     +IL R P  +++V  +    LP +L+             
Sbjct: 102 KRREPDLPVLLGGPHATMLHRQILERFPQFDIIVRYEADEILPAVLDCLEQRTFDVIPGL 161

Query: 146 ----------------GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKF 189
                             +V + D      ++   + D G +  R     +    GC   
Sbjct: 162 SWRATGRGAPLRFTDGKPKVEELDRLPIASYDHYPVDDLGLSMLR-----IEAGRGCPFA 216

Query: 190 CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSD 249
           CTFC        + S  L        +L                +      D        
Sbjct: 217 CTFCSTAGFF--QRSFRLKSAERLVHELDILHRRYRV-------SDFKLDHDMFTVNRHK 267

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
           ++     + G       ++    + + L++   D       L+  V++GS+R+     +R
Sbjct: 268 VMAFCEAVAGRGYRWRASARIDCVDEALLRKMADAG--CVNLYFGVETGSERMQTICRKR 325

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSD--FIVGFPGETDDDFRATMDLVDKIG-----YAQA 362
                  ++++ I +      I +   FI G+P E+  D   T+D++ +         Q 
Sbjct: 326 ----LDLRLVEPILAAADSFGIETTASFITGYPQESGQDQDDTLDMIGRCARRPSCLTQL 381

Query: 363 FSFKYSPRLGTP 374
                 P  GTP
Sbjct: 382 HMLA--PEPGTP 391


>gi|126649870|ref|ZP_01722106.1| Mg-protoporphyrin IX monomethyl ester oxidative cyclase [Bacillus
           sp. B14905]
 gi|126593589|gb|EAZ87534.1| Mg-protoporphyrin IX monomethyl ester oxidative cyclase [Bacillus
           sp. B14905]
          Length = 579

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 51/293 (17%), Positives = 96/293 (32%), Gaps = 28/293 (9%)

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +    ++         D+ +++ G     +    LRR P V+ +V  +      +LL   
Sbjct: 67  IEETIHVIKMLKTVCPDVKILLGGPEVSYDSHHWLRRIPEVDFIVMGEGETSFKQLLRYL 126

Query: 144 ---------------RFGKRVVDTDYSVEDKFERLSIVDGGYNRKR--GVTAFLTIQEGC 186
                            GK  +       D  E  S      +         ++    GC
Sbjct: 127 HGEILLEDVPGICYLEDGKVKIHAQPPKIDLRELASPFRFEEDLPHLGKRIQYIETSRGC 186

Query: 187 DKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT 246
              C FC+     G     +  ++ ++ R L+DNG   I  + +  N  R   ++  +  
Sbjct: 187 PFSCQFCLSSIEVG-VRYFNREKIKEDIRFLMDNGARTIKFVDRTFNISRSYAMEMFQFL 245

Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL-DVLMPYLHLPVQSGSDRILKS 305
             +         G+V     T+    M   +I+   D     +    + VQS +D     
Sbjct: 246 IDEHK------PGVVFQFEITADI--MRPEVIQFLNDNAPRGLFRFEIGVQSTNDLTNTL 297

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           + RR    + ++ +  ++     I    D I G P E    FR T + V  + 
Sbjct: 298 VQRRQNFEKLKRTVTMVKDG-GKIDQHLDLIAGLPEEDYASFRQTFNDVFAMR 349


>gi|67920129|ref|ZP_00513649.1| Radical SAM [Crocosphaera watsonii WH 8501]
 gi|67857613|gb|EAM52852.1| Radical SAM [Crocosphaera watsonii WH 8501]
          Length = 527

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 53/331 (16%), Positives = 107/331 (32%), Gaps = 32/331 (9%)

Query: 58  SMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEI 117
             + A++++ +   +++         L +I+  K           VVV G  A +   E+
Sbjct: 67  EWEWAEMVIFSAMIVQKP------DLLAQIKEAKRRGK------CVVVGGSYAPSVPSEV 114

Query: 118 LRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGV- 176
                  + +V  +    LP  +E  + G+         +       I            
Sbjct: 115 QEA--GADFLVLDEGEITLPMSVEALQRGETQATIRTEEKPDVTLRPIPRYDLLELDAYD 172

Query: 177 TAFLTIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW 235
           +  +    GC   C FC +    G +  +++ +Q++ E   L + G      +  +    
Sbjct: 173 SMSVQFSRGCPFQCEFCDIIVLYGRKPRTKTPAQLLKELDYLYELGWRRGVFMVDD---- 228

Query: 236 RGKGLDGEKCTFSDLLYSL----SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL 291
                 G K     LL  L     E +   R     S        L++   + +     +
Sbjct: 229 ---NFIGNKRNVKLLLKELKVWQKEHQYPFRFNTEASVDLAQDTELMELMVESN--FDAV 283

Query: 292 HLPVQSGSDRILKSMNRR-HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
            L +++  +  LK   +  +T       ID +  +R  +   + FI+GF GE        
Sbjct: 284 FLGIETPDEESLKLTKKFQNTRDSLTDTIDTL--IRAGLRSMAGFIIGFDGEKIGAASRI 341

Query: 351 MDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +  V+      A          T   + LE+
Sbjct: 342 IRFVENAAIPTAMFGMLQALPHTALWHRLEK 372


>gi|167826469|ref|ZP_02457940.1| radical SAM domain/B12 binding domain protein [Burkholderia
           pseudomallei 9]
 gi|167847984|ref|ZP_02473492.1| radical SAM domain/B12 binding domain protein [Burkholderia
           pseudomallei B7210]
 gi|167896536|ref|ZP_02483938.1| radical SAM domain/B12 binding domain protein [Burkholderia
           pseudomallei 7894]
 gi|167921166|ref|ZP_02508257.1| radical SAM domain/B12 binding domain protein [Burkholderia
           pseudomallei BCC215]
          Length = 651

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 52/312 (16%), Positives = 99/312 (31%), Gaps = 54/312 (17%)

Query: 95  IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF--------- 145
            +   DL V++ G  A     +IL R P  +++V  +    LP +L+             
Sbjct: 102 KRREPDLPVLLGGPHATMLHRQILERFPQFDIIVRYEADEILPAVLDCLEQRTFDVIPGL 161

Query: 146 ----------------GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKF 189
                             +V + D      ++   + D G +  R     +    GC   
Sbjct: 162 SWRATGRGAPLRFTDGKPKVEELDRLPIASYDHYPVDDLGLSMLR-----IEAGRGCPFA 216

Query: 190 CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSD 249
           CTFC        + S  L        +L                +      D        
Sbjct: 217 CTFCSTAGFF--QRSFRLKSAERLVHELDILHRRYRV-------SDFKLDHDMFTVNRHK 267

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
           ++     + G       ++    + + L++   D       L+  V++GS+R+     +R
Sbjct: 268 VMAFCEAVAGRGYRWRASARIDCVDEALLRKMADAG--CVNLYFGVETGSERMQTICRKR 325

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSD--FIVGFPGETDDDFRATMDLVDKIG-----YAQA 362
                  ++++ I +      I +   FI G+P E+  D   T+D++ +         Q 
Sbjct: 326 ----LDLRLVEPILAAADSFGIETTASFITGYPQESGQDQDDTLDMIGRCARRPSCLTQL 381

Query: 363 FSFKYSPRLGTP 374
                 P  GTP
Sbjct: 382 HMLA--PEPGTP 391


>gi|308798795|ref|XP_003074177.1| coproporphyrinogen III oxidase (ISS) [Ostreococcus tauri]
 gi|116000349|emb|CAL50029.1| coproporphyrinogen III oxidase (ISS) [Ostreococcus tauri]
          Length = 458

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 41/213 (19%), Positives = 66/213 (30%), Gaps = 24/213 (11%)

Query: 186 CDKFCTFC--VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG---- 239
           C   C +C   +            +   +  R   +    E       +    G      
Sbjct: 57  CRSRCYYCDFAISVIGTR------TDASEGMRAYAEAVTRETRATATRMRERYGASGIKP 110

Query: 240 ----LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL-------M 288
                 G        +  L EI G +R  +  +   ++S  +     + D L       +
Sbjct: 111 LETIFFGGGTPSLVPVDVLGEILGTLRREFGIASGAEISAEMDPGTFNEDKLRGFLDLGV 170

Query: 289 PYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFR 348
             + L VQS  D +LK   R H   E    I+ +RS       S D I G PG     +R
Sbjct: 171 NRVSLGVQSFDDEVLKRAGRSHDVREAELAIEMLRS-CGVPRWSVDLIGGLPGVDAKTWR 229

Query: 349 ATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           A++D V + G      +      GT       +
Sbjct: 230 ASLDRVIESGADHVSVYDLQVEKGTAFYRWYGE 262


>gi|307244326|ref|ZP_07526440.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Peptostreptococcus stomatis DSM 17678]
 gi|306492292|gb|EFM64331.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Peptostreptococcus stomatis DSM 17678]
          Length = 382

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 44/203 (21%), Positives = 71/203 (34%), Gaps = 16/203 (7%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C K C +C      G      +   +    K   N      L+      + G G      
Sbjct: 13  CAKKCGYCDFTSLVGNG--TQIDDYLSYLDKEF-NLYKAGNLIDDIETIFIGGGTPS--- 66

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL-------MPYLHLPVQSG 298
                   L  +  +VR     S  R+ +          D L       +  L + +Q+ 
Sbjct: 67  --ILSASQLERLFSIVRKNVDLSKLREYTMESNPGSLTRDKLELMKAGGLNRLSIGLQAS 124

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
            D +LK + R HT  E+ +     RSV  D  I+ D +  F G+T +D+R T++ V  + 
Sbjct: 125 QDHLLKFLERIHTYEEFLESYRLARSVGFD-NINIDLMFAFQGQTLEDWRETLERVVSLE 183

Query: 359 YAQAFSFKYSPRLGTPGSNMLEQ 381
                ++      GT   NM E 
Sbjct: 184 PDHISAYSLIIEEGTKFFNMYED 206


>gi|298531039|ref|ZP_07018440.1| Radical SAM domain protein [Desulfonatronospira thiodismutans
           ASO3-1]
 gi|298509062|gb|EFI32967.1| Radical SAM domain protein [Desulfonatronospira thiodismutans
           ASO3-1]
          Length = 578

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 32/215 (14%), Positives = 83/215 (38%), Gaps = 19/215 (8%)

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           R  ++V ++D    +     + V G    +      + I  GC   C FC   +      
Sbjct: 216 RAHRQVAESDSRRLETPAHSAFVSGQSVFRDSF--LVEINRGCPHGCRFCAAGFVYRPPR 273

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           +  ++++ +    +      ++ L+G  +  W             + L  L   K  ++ 
Sbjct: 274 TADINKLKELISGIRP---RKVGLVGTALTDW---------PDLQEFLQWLKAQK--IKF 319

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
             ++     ++   ++           + L V+  S  +  ++N+R    ++ Q ++ I 
Sbjct: 320 SLSSMRSDGLTSSFLEFLRRSGT--RSITLAVEGISRDLRTAVNKRFDHKKFFQAVEEIS 377

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
            ++ +  +   FI+G PGE+  DF+   + ++++ 
Sbjct: 378 RLQFN-TLKLYFILGLPGESGKDFQELENFLEEMQ 411


>gi|195953791|ref|YP_002122081.1| conserved hypothetical radical SAM protein [Hydrogenobaculum sp.
           Y04AAS1]
 gi|195933403|gb|ACG58103.1| conserved hypothetical radical SAM protein [Hydrogenobaculum sp.
           Y04AAS1]
          Length = 312

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 40/196 (20%), Positives = 67/196 (34%), Gaps = 14/196 (7%)

Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTF 247
             CT+C+   TR   IS  L  + ++    I          G N+  +            
Sbjct: 44  GGCTYCLT-GTRPAHIS-PLMDLREQISSGIAQAKRRY---GDNIYFYIYYQSYSNTYGD 98

Query: 248 SDLLYSLSEIKGLVRLRYT------TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
           SD L S+ ++                    +    LI+ +   D L  ++   +QS    
Sbjct: 99  SDFLKSVYDVALEFENVVGIDIGTRPDCVPEDVLELIQTY--TDKLDVWIEYGLQSSHFS 156

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
            L+ +NR H A ++   + R R  +  I I +  IVGFP E  +D   T  L+  +    
Sbjct: 157 TLRWINRAHGASDFVDAVLRTRKYK-GINICAHLIVGFPQEDLEDNLETAKLIVALNVNG 215

Query: 362 AFSFKYSPRLGTPGSN 377
                      T  + 
Sbjct: 216 VKIHPLHIIKNTKMAK 231


>gi|228996172|ref|ZP_04155822.1| Oxygen-independent coproporphyrinogen III oxidase 2 [Bacillus
           mycoides Rock3-17]
 gi|229003776|ref|ZP_04161586.1| Oxygen-independent coproporphyrinogen III oxidase 2 [Bacillus
           mycoides Rock1-4]
 gi|228757466|gb|EEM06701.1| Oxygen-independent coproporphyrinogen III oxidase 2 [Bacillus
           mycoides Rock1-4]
 gi|228763588|gb|EEM12485.1| Oxygen-independent coproporphyrinogen III oxidase 2 [Bacillus
           mycoides Rock3-17]
          Length = 496

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 44/247 (17%), Positives = 85/247 (34%), Gaps = 13/247 (5%)

Query: 129 GPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
           G        EL E     +  ++    + D   +L++V   Y  K  V+ ++ I   C  
Sbjct: 127 GMSKEEAHKELRESYLIHEEKIELLQRIVD--CQLAVVPDLYRLKEEVSIYIGIPF-CPT 183

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG-------LD 241
            C +C  P         S+   +      +      +   G  V      G        +
Sbjct: 184 KCAYCTFPAYAINGRQGSVDSFLGGLHYEVREIGKFLKEKGVKVTTIYYGGGTPTSITAE 243

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
                + ++  S  ++K +  +      P  ++   ++        +  + +  QS    
Sbjct: 244 EMDMLYEEMYQSFPDVKEVREVTVEAGRPDTITPEKLEVL--NKWNIDRISINPQSYHQE 301

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
            LK++ R HT  E  +     R +  +  I+ D I+G PGE  D F+ T+D  +K+    
Sbjct: 302 TLKAIGRHHTVEETIEKYHLARQMGMN-NINMDLIIGLPGEGLDIFKHTLDETEKLMPES 360

Query: 362 AFSFKYS 368
                 S
Sbjct: 361 LTVHTLS 367


>gi|254301919|ref|ZP_04969361.1| B12-binding/radical SAM domain protein [Burkholderia pseudomallei
           406e]
 gi|157825089|gb|EDO88981.1| B12-binding/radical SAM domain protein [Burkholderia pseudomallei
           406e]
          Length = 647

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 56/307 (18%), Positives = 103/307 (33%), Gaps = 44/307 (14%)

Query: 95  IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF--------- 145
            +   DL V++ G  A     +IL R P  +++V  +    LP +L+             
Sbjct: 98  KRREPDLPVLLGGPHATMLHRQILERFPQFDIIVRYEADEILPAVLDCLEQRTFDVIPGV 157

Query: 146 -------GKRVVDTDYSVE-DKFERLSIVDG-GYNRKRGVTAFLTIQ--EGCDKFCTFCV 194
                  G  +  TD   + ++ +RL I     Y       + L I+   GC   CTFC 
Sbjct: 158 SWRATGRGAPLRFTDGKPKVEELDRLPIASYDHYPVDDLGLSMLRIEAGRGCPFACTFCS 217

Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL 254
                  + S  L        +L                +      D        ++   
Sbjct: 218 TAGFF--QRSFRLKSAERLVHELDILHRRYRV-------SDFKLDHDMFTVNRHKVMAFC 268

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
             + G       ++    + + L++   D       L+  V++GS+R+     +R     
Sbjct: 269 EAVAGRGYRWRASARIDCVDEALLRKMADAG--CVNLYFGVETGSERMQTICRKR----L 322

Query: 315 YRQIIDRIRSVRPDIAISSD--FIVGFPGETDDDFRATMDLVDKIG-----YAQAFSFKY 367
             ++++ I +      I +   FI G+P E+  D   T+D++ +         Q      
Sbjct: 323 DLRLVEPILAAADSFGIETTASFITGYPQESGQDQDDTLDMIGRCARRPSCLTQLHMLA- 381

Query: 368 SPRLGTP 374
            P  GTP
Sbjct: 382 -PEPGTP 387


>gi|28897259|ref|NP_796864.1| hypothetical protein VP0485 [Vibrio parahaemolyticus RIMD 2210633]
 gi|260366328|ref|ZP_05778780.1| radical SAM domain protein [Vibrio parahaemolyticus K5030]
 gi|260876226|ref|ZP_05888581.1| radical SAM domain protein [Vibrio parahaemolyticus AN-5034]
 gi|260897180|ref|ZP_05905676.1| radical SAM domain protein [Vibrio parahaemolyticus Peru-466]
 gi|260902193|ref|ZP_05910588.1| radical SAM domain protein [Vibrio parahaemolyticus AQ4037]
 gi|28805468|dbj|BAC58748.1| conserved hypothetical protein [Vibrio parahaemolyticus RIMD
           2210633]
 gi|308087985|gb|EFO37680.1| radical SAM domain protein [Vibrio parahaemolyticus Peru-466]
 gi|308093025|gb|EFO42720.1| radical SAM domain protein [Vibrio parahaemolyticus AN-5034]
 gi|308108482|gb|EFO46022.1| radical SAM domain protein [Vibrio parahaemolyticus AQ4037]
 gi|308114730|gb|EFO52270.1| radical SAM domain protein [Vibrio parahaemolyticus K5030]
          Length = 319

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 47/232 (20%), Positives = 80/232 (34%), Gaps = 23/232 (9%)

Query: 181 TIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL 240
           TI  G    CTFC V      E+   +  + ++ +            L            
Sbjct: 39  TIGRG---GCTFCNVASFADEEV--QIKSIHEQLKDRAGEIHRAKKYLA---YFQAYTST 90

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV--LMPYLHLPVQSG 298
             E     ++     +   +V L    + P  + D ++    D        +L L +Q+ 
Sbjct: 91  YAEVQVLKNMYEEALKAADIVGL-CVGTRPDCVPDSVLDLLSDYVNQGYEIWLELGLQTA 149

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           ++  LK +NR H    Y +I  R R++   I + +  IVG P ET DD   T+  V  +G
Sbjct: 150 NNDTLKRINRGHDFECYAEITQRARAL--GIKVCTHLIVGLPKETRDDNIETLQKVLAVG 207

Query: 359 YAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACV 410
                        G+  +          KA R   L+    E+ V+     +
Sbjct: 208 TDGIKLHGLHIVEGSTMA----------KAWRAGRLEAPGLEEYVAIASEMI 249


>gi|332526379|ref|ZP_08402503.1| Radical SAM domain-containing protein [Rubrivivax benzoatilyticus
           JA2]
 gi|332110513|gb|EGJ10836.1| Radical SAM domain-containing protein [Rubrivivax benzoatilyticus
           JA2]
          Length = 813

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 50/330 (15%), Positives = 104/330 (31%), Gaps = 40/330 (12%)

Query: 117 ILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGV 176
           +++R    +V + P         ++                D+F R             +
Sbjct: 353 LVQRHGERDVWINPPPLPLNMPEMDHVFDLPYARSPHPRYADEFGRHDGATK-IPAWEMI 411

Query: 177 TAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDN-GVCEIT--LLGQNV 232
              + I  GC   CTFC +    G  I SRS   +V E  ++    G   +   L G   
Sbjct: 412 RFSVNIMRGCFGGCTFCSITEHEGRIIQSRSADSIVREVEQMRTMPGFTGVVSDLGGPTA 471

Query: 233 NAWR----------------------GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270
           N +R                       + L  +      +   +  + G+ ++   +   
Sbjct: 472 NMYRLGCKSPEIEAACRKPSCVYPDICQNLRTDHGPLVKIYRRVRALPGVKKVLIGSGLR 531

Query: 271 RDMSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRRH--TAYEYRQIIDRI-RSV 325
            D++   ++   +L    +  YL +  +      L  M +    +   ++Q+ D+     
Sbjct: 532 YDLAVRSLEYTRELVSHHVGGYLKIAPEHTERGPLSKMMKPGIGSYDRFKQLFDQFSAEA 591

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ---- 381
                +   FI   PG TD+D       + + G+       + P      + M       
Sbjct: 592 GKKQYLIPYFIAAHPGTTDEDMMNLALWLKQNGFKADQVQTFYPSPMATATAMYHSGLNP 651

Query: 382 ---VDENVKAERLLCLQ-KKLREQQVSFND 407
              V  + + ER+  ++ ++ R    +F  
Sbjct: 652 LKGVHRDERGERVDVVRGERRRRLHKAFLR 681


>gi|325915038|ref|ZP_08177367.1| lipoate synthase [Xanthomonas vesicatoria ATCC 35937]
 gi|325538736|gb|EGD10403.1| lipoate synthase [Xanthomonas vesicatoria ATCC 35937]
          Length = 337

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 46/236 (19%), Positives = 77/236 (32%), Gaps = 24/236 (10%)

Query: 161 ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS--QVVDEARKLI 218
           E  S  +       G   F+ + E C + C+FC V + R           +    A  + 
Sbjct: 82  EEASCPNIHECFSHGTATFMILGEVCTRRCSFCDVAHGRPK----PPDANEPASLATTVA 137

Query: 219 DNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD---MSD 275
           D G+  + +   +    R    DG    F D + ++       R+   T   R    M  
Sbjct: 138 DMGLKYVVVTSVD----RDDLRDGGAQHFVDCIAAIRASSPNTRIEILTPDFRGKGRMDR 193

Query: 276 CL-IKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSD 334
            L I A    DV    +        +     +           ++ R ++  P IA  S 
Sbjct: 194 ALEILALSPPDVFNHNIETVPDLYPN-----VRPGADYQWSLTLLQRFKAQHPSIATKSG 248

Query: 335 FIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN--MLEQVDENVKA 388
            ++G  GET +  +AT+  +           +Y     TP  +  M     E  KA
Sbjct: 249 IMLGL-GETMEQVQATLRDLRAHDVDMITIGQY--LQPTPHHHPVMRYWTPEEYKA 301


>gi|167904911|ref|ZP_02492116.1| radical SAM domain/B12 binding domain protein [Burkholderia
           pseudomallei NCTC 13177]
          Length = 651

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 52/312 (16%), Positives = 99/312 (31%), Gaps = 54/312 (17%)

Query: 95  IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF--------- 145
            +   DL V++ G  A     +IL R P  +++V  +    LP +L+             
Sbjct: 102 KRREPDLPVLLGGPHATMLHRQILERFPQFDIIVRYEADEILPAVLDCLEQRTFDVIPGL 161

Query: 146 ----------------GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKF 189
                             +V + D      ++   + D G +  R     +    GC   
Sbjct: 162 SWRATGRGAPLRFTDGKPKVEELDRLPIASYDHYPVDDLGLSMLR-----IEAGRGCPFA 216

Query: 190 CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSD 249
           CTFC        + S  L        +L                +      D        
Sbjct: 217 CTFCSTAGFF--QRSFRLKSAERLVHELDILHRRYRV-------SDFKLDHDMFTVNRHK 267

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
           ++     + G       ++    + + L++   D       L+  V++GS+R+     +R
Sbjct: 268 VMAFCEAVAGRGYRWRASARIDCVDEALLRKMADAG--CVNLYFGVETGSERMQTICRKR 325

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSD--FIVGFPGETDDDFRATMDLVDKIG-----YAQA 362
                  ++++ I +      I +   FI G+P E+  D   T+D++ +         Q 
Sbjct: 326 ----LDLRLVEPILAAADSFGIETTASFITGYPQESGQDQDDTLDMIGRCARRPSCLTQL 381

Query: 363 FSFKYSPRLGTP 374
                 P  GTP
Sbjct: 382 HMLA--PEPGTP 391


>gi|114321504|ref|YP_743187.1| coproporphyrinogen III oxidase, anaerobic [Alkalilimnicola
           ehrlichii MLHE-1]
 gi|114227898|gb|ABI57697.1| coproporphyrinogen III oxidase, anaerobic [Alkalilimnicola
           ehrlichii MLHE-1]
          Length = 466

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 39/194 (20%), Positives = 66/194 (34%), Gaps = 15/194 (7%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C+  C+FC      G+E         ++  + +     E+  + +     +     G   
Sbjct: 72  CNYACSFCCYAKKVGVER--------EQMARYVATLKRELEWIPEGTPVNQFFIGGGTPT 123

Query: 246 TF--SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLI-KAHGDL--DVLMPYLHLPVQSGSD 300
                 L   L  I G +       H  + S   I  AH  +     +  + + VQS  D
Sbjct: 124 ALPADLLDELLGAIAGRMPYHGDPVHTVEASPESISDAHLAVLQRHGVRRVSMGVQSLDD 183

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
            +L S+ R H      +   RI  +   + ++ D I G PG+T   FR     V   G  
Sbjct: 184 EVLDSVRRSHGPDLALETCRRI--IDAGLILNIDLIYGLPGQTHAGFRRDFQRVADAGVH 241

Query: 361 QAFSFKYSPRLGTP 374
              ++       TP
Sbjct: 242 AVTAYNLRLNERTP 255


>gi|325275605|ref|ZP_08141507.1| lipoyl synthase [Pseudomonas sp. TJI-51]
 gi|324099279|gb|EGB97223.1| lipoyl synthase [Pseudomonas sp. TJI-51]
          Length = 319

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 44/270 (16%), Positives = 96/270 (35%), Gaps = 23/270 (8%)

Query: 109 VAQAEGEEILRRSPIVNV---VVGPQTYYRLPELL--ERARFGK----RVVDTDYSVEDK 159
           +A   G ++     +  +   ++  +   R P+ +  E A   +    + +   + +   
Sbjct: 5   MAVQTGVKLRGADKVARIPVKILPTEDVPRKPDWIRVEIAASPEVARIKALLRKHKLHSV 64

Query: 160 FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLID 219
            E  S  + G     G   F+ + + C + C FC V    G      + +  + A  + D
Sbjct: 65  CEEASCPNLGECFSGGTATFMIMGDICTRRCPFCDV--GHGRPRPLDVDEPRNLATAIAD 122

Query: 220 NGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKGLVRLRYTTSHPRDMSDCL- 277
             +  + +   +    R    DG    F++ +  + ++  G+        +   M   L 
Sbjct: 123 LRLKYVVITSVD----RDDLRDGGAGHFAECIRQIRAKCPGIQLETLVPDYRGRMEAALA 178

Query: 278 IKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIV 337
           I A    DV    L         R+ K+            +++R + + P++   S  ++
Sbjct: 179 ITAEAPPDVFNHNLETV-----PRLYKAARPGSDFEWSLDLLERFKQLVPEVPTKSGLML 233

Query: 338 GFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           G  GETD++    M  + + G       +Y
Sbjct: 234 GL-GETDEEVIKVMTRMREHGVDMLTLGQY 262


>gi|254417069|ref|ZP_05030816.1| radical SAM domain protein [Microcoleus chthonoplastes PCC 7420]
 gi|196176236|gb|EDX71253.1| radical SAM domain protein [Microcoleus chthonoplastes PCC 7420]
          Length = 527

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 52/332 (15%), Positives = 111/332 (33%), Gaps = 33/332 (9%)

Query: 58  SMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIK--EGGDLLVVVAGCVAQAEGE 115
             + AD+++L+   +++         L +IR  K    +   GG     V   V QA  +
Sbjct: 62  EWEWADIVILSAMIVQKG------DLLAQIREAKRRGKRVACGGPFPTSVPDGVQQAGTD 115

Query: 116 EILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRG 175
            ++     + + +  +   R  E       G++  D   +   +F+ L +          
Sbjct: 116 YLILDEGEITLPLFVEAIQRGDETGIFRSNGQKP-DVTTTPIPRFDLLELDAYD------ 168

Query: 176 VTAFLTIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVCEITLLGQNVNA 234
            +  +    GC   C FC +    G +  +++ +Q++ E   L + G      +  +   
Sbjct: 169 -SMSVQFSRGCPFQCEFCDIIVLYGRKPRTKTPAQLLAELDYLYELGWRRGVFMVDD--- 224

Query: 235 WRGKGLDGEKCTFSDLLYSLSEIKG----LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY 290
                  G K     LL  L   +       R     S        L++   +       
Sbjct: 225 ----NFIGNKRNVKLLLKELKVWQEAHQYPFRFNTEASVDLAQDPELMQLMVEC--YFDA 278

Query: 291 LHLPVQSGSDRILKSMNRR-HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           + L +++  +  L+   +  +T     + +D I      + + + FIVGF GE       
Sbjct: 279 VFLGIETPDEDSLQLTKKFQNTRSSLAESVDIITEA--GLRVIAGFIVGFDGEKSGAGSR 336

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
            +   ++ G              T   + L++
Sbjct: 337 IVRFAEQTGIPTTTFAMLQALPNTALWHRLDK 368


>gi|270308450|ref|YP_003330508.1| radical SAM domain protein [Dehalococcoides sp. VS]
 gi|270154342|gb|ACZ62180.1| radical SAM domain protein [Dehalococcoides sp. VS]
          Length = 503

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 64/385 (16%), Positives = 136/385 (35%), Gaps = 43/385 (11%)

Query: 62  ADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRS 121
           AD + ++   +++K+A +    + R   L            VV  G    AE E +    
Sbjct: 66  ADYVFISAMAVQQKSAHEC---INRCHALGRK---------VVAGGPYFTAEAETL---- 109

Query: 122 PIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAF-L 180
             ++ ++  +    L + +     GK         +    R  I      + +  ++  L
Sbjct: 110 KGIDHLLLGEVENSLADFVADLEAGKAAAVYPEKEKSDLTRTPIPLWNLVKAKEYSSMSL 169

Query: 181 TIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
               GC   C FC +    G    S+  +QV+ E   L  +G         +        
Sbjct: 170 QYSRGCPFNCEFCDIVVLNGRIPRSKGRTQVLAELNALYKSGWRSGVFFVDD------NF 223

Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM----SDCLIKAHGDLDVLMPYLHLPV 295
           +  +    +D+L ++   +      ++ +    +     D L+   G+       + + V
Sbjct: 224 IGNKNKLKADILPAVVAWQKRKGYPFSFNTEVSINLADDDELLHLMGEAG--FDTVFVGV 281

Query: 296 QSGSDRILKSMNRRHTA-YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           ++ +   L   ++   A  +    I++I+     + +   FI+GF  +    FRA ++ +
Sbjct: 282 ETPNPESLAECSKHQNANRDMLVSIEKIQKA--GMQVQGGFILGFDSDPVSIFRAQINFI 339

Query: 355 DKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLC-LQKKLREQQVSFNDACVGQI 413
            + G   A     +   GT   N L+      K +RLL   +    +  ++F      + 
Sbjct: 340 QQSGIVTAMVGLLNAPRGTRLWNRLK------KEKRLLEDFRGDNTDCSLNFVPRM--KT 391

Query: 414 IEVLIEKHGKEKGKLVGRSPWLQSV 438
            EVLI  + +    +     + Q V
Sbjct: 392 -EVLINGYNRVLSAIYAPREYYQRV 415


>gi|220907313|ref|YP_002482624.1| Radical SAM domain-containing protein [Cyanothece sp. PCC 7425]
 gi|219863924|gb|ACL44263.1| Radical SAM domain protein [Cyanothece sp. PCC 7425]
          Length = 554

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 48/341 (14%), Positives = 100/341 (29%), Gaps = 51/341 (14%)

Query: 58  SMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEI 117
               AD+++ +  HI+     ++     R+  L             VV G       E  
Sbjct: 91  DYRWADVVITSGMHIQRPQINQINEIAHRLGKL------------TVVGGPSVSGCPE-- 136

Query: 118 LRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNR----- 172
               P  +++   +       ++E                +  ERL +            
Sbjct: 137 --YYPDFDILHLGELGDATDRMIEYFDLHGSTRPPAQLRFETLERLPLSQFPVPAYNLVN 194

Query: 173 -KRGVTAFLTIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVCEITLLGQ 230
            +      +    GC   C FC +P   G     ++  Q++ E   ++ +G         
Sbjct: 195 VRNYFLGSVQFSSGCPFRCEFCDIPELYGRNPRLKTPEQILQELDTMLASG--------- 245

Query: 231 NVNAWRGKGLD--GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLM 288
           N  A      +  G +   ++LL  L  I    R  Y      + +            L+
Sbjct: 246 NPGAVYFVDDNFIGNRRAVTELLPHL--IDWQKRNGYPIQFACEATLN----IAQSPKLL 299

Query: 289 PYL--------HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV-RPDIAISSDFIVGF 339
             +           +++     L ++++         I++ I+++ R  + + S  I+G 
Sbjct: 300 EMMREAYFCTVFCGIETPEPDALHAISK--DQNLSMPILEAIKTLNRYGMEVVSGIIIGL 357

Query: 340 PGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
             +T       +D +                  TP    LE
Sbjct: 358 DTDTPQTGDRILDFIRASQIPTLTINLLHALPRTPLWRRLE 398


>gi|159149044|dbj|BAF92592.1| methyltransferase [Streptomyces pactum]
 gi|212379250|gb|ACJ24866.1| putative C-methyltransferase [Streptomyces pactum]
          Length = 661

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 53/326 (16%), Positives = 96/326 (29%), Gaps = 40/326 (12%)

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
                L  +  +   D  V+  G     + E + R  P V+VVV  +      +L+    
Sbjct: 108 RAFGTLAETFKQVNPDGWVIFGGNHVAHQAERVFRMFPQVDVVVNGEGELVFRDLMNGYL 167

Query: 145 FG---------------------------KRVVDTDYSVEDKFERLSIVDGGYNRKRGVT 177
            G                           +R+ D +            +     R     
Sbjct: 168 DGARPTALHEISGVSFREADGNLVTTPERERIQDLEILPSPILTGAIPLADSQGRFLYDY 227

Query: 178 AFLTIQEGCDKFCTFCVVPYTRG-IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR 236
           A +    GC   C FC      G    + S  ++ +E   L  +G   + L   N    R
Sbjct: 228 AIMETNRGCPYKCAFCYWGGATGQKMRAFSRERLREELDVLGRHGAEILMLADSNFGLLR 287

Query: 237 GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQ 296
                       DLL   ++     RL  + +  +      I        +     L +Q
Sbjct: 288 QDEEF-----LEDLLRVRAKYGYPNRLETSWAKNKSAGFYRIMEKMKESGMHSAFILALQ 342

Query: 297 SGSDRILKSMNRRHTA-YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
           +  + +L  M RR+    ++  ++  +      I    + I G PGET + F    D   
Sbjct: 343 TMDESVLDLMRRRNMKLNDWESLVGWLTD--HGITPYLELIWGAPGETVESFLDGYDRAA 400

Query: 356 KIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +            P +  P +   ++
Sbjct: 401 R----HTPFIAVHPLMLLPNTEYHDK 422


>gi|158520424|ref|YP_001528294.1| radical SAM domain-containing protein [Desulfococcus oleovorans
           Hxd3]
 gi|158509250|gb|ABW66217.1| Radical SAM domain protein [Desulfococcus oleovorans Hxd3]
          Length = 595

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 43/237 (18%), Positives = 78/237 (32%), Gaps = 38/237 (16%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDNGVCEITL--LGQNVNAWR 236
           +    GC   C+FC +    G  I SRS + ++ EAR++ D+   + T+  +G       
Sbjct: 294 IVTHRGCFGECSFCAITVHEGPIIMSRSEASILREARQMRDHPDFKGTIYNVGGATANMY 353

Query: 237 GKGLDGEKC--------------------TFSDLLYSLSEIKGLVRLR-YTTSHPRDMSD 275
           G G   +K                             L +I  L  +R            
Sbjct: 354 GAGCGRKKTGGVCAGRQCLWPEICDNLVVDHHRQRRLLEKIGKLAGVRHVFVQSGIRHDL 413

Query: 276 CLIKAHGD--------LDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI----R 323
            L  A G            +   + +  +     +L+ M +   A  + + +       +
Sbjct: 414 VLHDAGGGQRYLEALLTRHISGQMKIAPEHSEPHVLRLMGKPG-ADVWTRFVREFNTTKK 472

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDK-IGYAQAFSFKYSPRLGTPGSNML 379
            +   +  +  FI  FPG T  D R    +V K + +       ++P   TP + M 
Sbjct: 473 RLSKRVFFTCYFIAAFPGCTLADMRRLGAIVKKTLAFTPEQVQIFTPAPSTPATAMY 529


>gi|33866682|ref|NP_898241.1| hypothetical protein SYNW2150 [Synechococcus sp. WH 8102]
 gi|33633460|emb|CAE08665.1| conserved hypothetical protein [Synechococcus sp. WH 8102]
          Length = 525

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 45/303 (14%), Positives = 92/303 (30%), Gaps = 33/303 (10%)

Query: 79  KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVV-VGPQTYYRLP 137
           +++   G +R+      +       V+ G       E++ +  P   +V +G        
Sbjct: 121 ELFRNQGLVRSGLRQARRHHPAARAVLGGGAVSVFYEQLSKSLPKGTIVSIGEGEPLLEK 180

Query: 138 ELLERARFGKRVVDTDYSVE------------------DKFERLSIVDGGYNRKRGVTAF 179
            +   +  G+R      +                    D    +      Y         
Sbjct: 181 LIQGDSLDGERCFVVGAAPRPGLIHEQPESRPKTACNYDYIASIWPQLDWYLEGGDFYVG 240

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISR-SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK 238
           +  + GC   C +CV     G ++    + +VV E R+L D GV             R  
Sbjct: 241 VQTKRGCPHNCCYCVYTVVEGKQVRLNPVEEVVKEMRQLYDRGVRGFWFTDAQFIPARRY 300

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRY-TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQS 297
             D +     DLL ++ + +GL  +R+       ++   L +   +    M Y  + + S
Sbjct: 301 IEDAK-----DLLRAI-KAEGLTGIRWAAYIRADNLDPELAQLMVETG--MSYFEIGITS 352

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPG--ETDDDFRATMDLVD 355
           GS  +++ M   +           +                F    E  +  R T+    
Sbjct: 353 GSQELVRKMRMGYNLRTVLDSCRMLADA--GFQDHVSVNYSFNVIDERPETIRQTVAYHR 410

Query: 356 KIG 358
           ++ 
Sbjct: 411 ELE 413


>gi|260587426|ref|ZP_05853339.1| radical SAM domain protein [Blautia hansenii DSM 20583]
 gi|331083707|ref|ZP_08332818.1| hypothetical protein HMPREF0992_01742 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|260542293|gb|EEX22862.1| radical SAM domain protein [Blautia hansenii DSM 20583]
 gi|330403918|gb|EGG83470.1| hypothetical protein HMPREF0992_01742 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 577

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 41/288 (14%), Positives = 101/288 (35%), Gaps = 27/288 (9%)

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +  ++ L     K     ++   G     + E+ L+  P V  V+  +      EL++  
Sbjct: 69  ISFVKELICDLKKILPQTVIWAGGPEVSYDAEKFLQELPEVTGVMCGEGEQTFLELVQHY 128

Query: 144 RFGKR-----------------VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGC 186
              K                  +V   +      ++L       +       +     GC
Sbjct: 129 VHEKEEDALADIKGIVFQKNGEIVRNPFREIMDMDKLVFPYKNISLFEHKIIYYESSRGC 188

Query: 187 DKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT 246
              C++C+          RSLS V +E +  +D  V ++  + +  N         +K  
Sbjct: 189 PFSCSYCL-SSIDKKLRFRSLSLVKEELQFFLDAKVPQVKFVDRTFNC--------KKEH 239

Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306
             ++   + E    +   +       +++  I+    +   +  L + VQS + + ++ +
Sbjct: 240 ALEIWNYIHEHDNGITNFHFEIAADLLTEEEIQLIHTMRPGLIQLEIGVQSTNPKTIEEI 299

Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
            R+ +  +  + + +++  + ++    D I G P E  + F+ +   V
Sbjct: 300 RRKTSFEKISEKVKKVQEGK-NVHQHLDLIAGLPYEGYESFKKSFCDV 346


>gi|167740887|ref|ZP_02413661.1| radical SAM domain/B12 binding domain protein [Burkholderia
           pseudomallei 14]
          Length = 651

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 56/307 (18%), Positives = 103/307 (33%), Gaps = 44/307 (14%)

Query: 95  IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF--------- 145
            +   DL V++ G  A     +IL R P  +++V  +    LP +L+             
Sbjct: 102 KRREPDLPVLLGGPHATMLHRQILERFPQFDIIVRYEADEILPAVLDCLEQRTFDVIPGV 161

Query: 146 -------GKRVVDTDYSVE-DKFERLSIVDG-GYNRKRGVTAFLTIQ--EGCDKFCTFCV 194
                  G  +  TD   + ++ +RL I     Y       + L I+   GC   CTFC 
Sbjct: 162 SWRATGRGAPLRFTDGKPKVEELDRLPIASYDHYPVDDLGLSMLRIEAGRGCPFACTFCS 221

Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL 254
                  + S  L        +L                +      D        ++   
Sbjct: 222 TAGFF--QRSFRLKSAERLVHELDILHRRYRV-------SDFKLDHDMFTVNRHKVMAFC 272

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
             + G       ++    + + L++   D       L+  V++GS+R+     +R     
Sbjct: 273 EAVAGRGYRWRASARIDCVDEALLRKMADAG--CVNLYFGVETGSERMQTICRKR----L 326

Query: 315 YRQIIDRIRSVRPDIAISSD--FIVGFPGETDDDFRATMDLVDKIG-----YAQAFSFKY 367
             ++++ I +      I +   FI G+P E+  D   T+D++ +         Q      
Sbjct: 327 DLRLVEPILAAADSFGIETTASFITGYPQESGQDQDDTLDMIGRCARRPSCLTQLHMLA- 385

Query: 368 SPRLGTP 374
            P  GTP
Sbjct: 386 -PEPGTP 391


>gi|315925403|ref|ZP_07921614.1| elongator protein 3/MiaB/NifB [Pseudoramibacter alactolyticus ATCC
           23263]
 gi|315621304|gb|EFV01274.1| elongator protein 3/MiaB/NifB [Pseudoramibacter alactolyticus ATCC
           23263]
          Length = 495

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 36/184 (19%), Positives = 60/184 (32%), Gaps = 18/184 (9%)

Query: 183 QEGCDKFCTFCVVPYTRG------IEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAW 235
             GC   CTFC +    G          RS   +  E   +I             N    
Sbjct: 195 SRGCYNNCTFCYINPFYGETAGCPRWRGRSPENIAAEIDMIIAQTDHRYFYFTDPNFFGP 254

Query: 236 RGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPV 295
              G D        L   L+E      +    +   D+ D +I A   +D  +  + + +
Sbjct: 255 GKAGRD----RVLRLAALLAERPITFGIE---ARVNDIDDAVIAAL--VDAGLTDILVGL 305

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
           +SG    L  +N+  T  +    +  +R  R  I  +  FI+  P  + DD R     + 
Sbjct: 306 ESGRQAALDRLNKHTTVSQNEAALAVLR--RHGIEPNVGFIMFEPDSSFDDLRENFAFLK 363

Query: 356 KIGY 359
           +   
Sbjct: 364 RNRL 367


>gi|302338523|ref|YP_003803729.1| oxygen-independent coproporphyrinogen III oxidase [Spirochaeta
           smaragdinae DSM 11293]
 gi|301635708|gb|ADK81135.1| oxygen-independent coproporphyrinogen III oxidase [Spirochaeta
           smaragdinae DSM 11293]
          Length = 392

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 79/221 (35%), Gaps = 21/221 (9%)

Query: 186 CDKFCTFC---VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG 242
           C   C +C    +P+  G   +R L +       +    +  +     N+      G   
Sbjct: 17  CFDKCDYCDFFSIPH-HGRPDNRLLDREFHLIESMGSRWLRLLQCR--NLETIYIGGGTP 73

Query: 243 EKCTFSDLLYSLSEIKGLVRLR--------YTTSHPRDMSDCLIKAHGDLDVLMPYLHLP 294
                  L   LS I GL++             ++PRD+S  LI         +  L L 
Sbjct: 74  SSIGLDRLERLLSIIAGLIKKEGIAFEGEYTIEANPRDISPDLITLLESYK--VNRLSLG 131

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           +QS +D+ L+++ R  +  +    +  + S       S D I G PG+  +     ++  
Sbjct: 132 LQSLNDQDLRAIGRSGSRAQSLNALSVLSSRWKG-RFSLDIIAGIPGQKSESIDEIVETA 190

Query: 355 DKIGYAQAFSFKYSPRLGTPGSNMLEQ----VDENVKAERL 391
            + G      ++ +   GTP +  + Q      ++    RL
Sbjct: 191 VESGADHLSIYQLTIEEGTPLARKIAQGLRRAPQDEDYLRL 231


>gi|150002626|ref|YP_001297370.1| coproporphyrinogen III oxidase [Bacteroides vulgatus ATCC 8482]
 gi|294776094|ref|ZP_06741587.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Bacteroides vulgatus PC510]
 gi|149931050|gb|ABR37748.1| coproporphyrinogen III oxidase [Bacteroides vulgatus ATCC 8482]
 gi|294450045|gb|EFG18552.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Bacteroides vulgatus PC510]
          Length = 376

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 40/211 (18%), Positives = 70/211 (33%), Gaps = 17/211 (8%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGV-CEITLLGQNVNAWR---GKGLD 241
           C K C +C          S    Q     R L       E  L G+++       G    
Sbjct: 11  CKKRCIYC---DFFSTTRS---EQKTAYIRALCRELTDREAYLEGEHIETIYLGGGTPSQ 64

Query: 242 GEKCTFSDLLYSLSEIKGLVR--LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
             K  F  +   + ++  ++        ++P D++   I            + + +Q+  
Sbjct: 65  LAKEDFEAIFSHIYKVYKVIPDAEITLEANPDDLTPEYISMLRTFP--FNRISMGIQTFQ 122

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIA-ISSDFIVGFPGETDDDFRATMDLVDKIG 358
           D  LK + RRHTA +  +     R+       IS D + G PGET   ++  +     + 
Sbjct: 123 DSTLKLLQRRHTAEQAIRAFQNCRTA--GFRNISIDLMYGLPGETLASWKEDLKQALALH 180

Query: 359 YAQAFSFKYSPRLGTPGSNMLEQVDENVKAE 389
                ++      GT    + EQ       E
Sbjct: 181 PEHISAYHLIYEEGTTLWQLREQHKLEEADE 211


>gi|154249660|ref|YP_001410485.1| radical SAM domain-containing protein [Fervidobacterium nodosum
           Rt17-B1]
 gi|154153596|gb|ABS60828.1| Radical SAM domain protein [Fervidobacterium nodosum Rt17-B1]
          Length = 600

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 36/183 (19%), Positives = 67/183 (36%), Gaps = 11/183 (6%)

Query: 177 TAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR 236
            A + I  GC + C FC   Y       RS  ++V   +KLI+N        G +  +  
Sbjct: 257 RAVIEISRGCTRGCRFCHAGYVYRPVRERSADEIVKSVKKLIEN-------TGYDEVSLL 309

Query: 237 GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLI-KAHGDLDVLMPYLHLPV 295
                            + E+K         S   D  +  I +   ++      L    
Sbjct: 310 SLSSLDHSQISEIAEKLVEELKDKKVSISIPSTRVDAFNIKIGEKIAEVRK--TGLTFAP 367

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
           ++GS ++  ++N++ +  +        +       I   F+VGFP ET++D +   +L+ 
Sbjct: 368 EAGSQKMRDAINKQISYDDIINTASEAKRAGWR-RIKLYFMVGFPEETEEDIKEIGELIK 426

Query: 356 KIG 358
            I 
Sbjct: 427 DIK 429


>gi|218232553|ref|YP_002369776.1| lipoyl synthase [Bacillus cereus B4264]
 gi|228923706|ref|ZP_04086984.1| Lipoyl synthase [Bacillus thuringiensis serovar huazhongensis BGSC
           4BD1]
 gi|228955241|ref|ZP_04117249.1| Lipoyl synthase [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
 gi|228961220|ref|ZP_04122840.1| Lipoyl synthase [Bacillus thuringiensis serovar pakistani str.
           T13001]
 gi|229049666|ref|ZP_04194223.1| Lipoyl synthase [Bacillus cereus AH676]
 gi|229072464|ref|ZP_04205666.1| Lipoyl synthase [Bacillus cereus F65185]
 gi|229082223|ref|ZP_04214686.1| Lipoyl synthase [Bacillus cereus Rock4-2]
 gi|229112418|ref|ZP_04241956.1| Lipoyl synthase [Bacillus cereus Rock1-15]
 gi|229130232|ref|ZP_04259191.1| Lipoyl synthase [Bacillus cereus BDRD-Cer4]
 gi|229147522|ref|ZP_04275869.1| Lipoyl synthase [Bacillus cereus BDRD-ST24]
 gi|229153166|ref|ZP_04281345.1| Lipoyl synthase [Bacillus cereus m1550]
 gi|229175671|ref|ZP_04303179.1| Lipoyl synthase [Bacillus cereus MM3]
 gi|229181273|ref|ZP_04308603.1| Lipoyl synthase [Bacillus cereus 172560W]
 gi|229193255|ref|ZP_04320206.1| Lipoyl synthase [Bacillus cereus ATCC 10876]
 gi|296505411|ref|YP_003667111.1| lipoyl synthase [Bacillus thuringiensis BMB171]
 gi|226737633|sp|B7HCZ6|LIPA_BACC4 RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|218160510|gb|ACK60502.1| lipoic acid synthetase [Bacillus cereus B4264]
 gi|228590232|gb|EEK48100.1| Lipoyl synthase [Bacillus cereus ATCC 10876]
 gi|228602166|gb|EEK59657.1| Lipoyl synthase [Bacillus cereus 172560W]
 gi|228607812|gb|EEK65126.1| Lipoyl synthase [Bacillus cereus MM3]
 gi|228630265|gb|EEK86915.1| Lipoyl synthase [Bacillus cereus m1550]
 gi|228635948|gb|EEK92431.1| Lipoyl synthase [Bacillus cereus BDRD-ST24]
 gi|228653165|gb|EEL09044.1| Lipoyl synthase [Bacillus cereus BDRD-Cer4]
 gi|228671066|gb|EEL26372.1| Lipoyl synthase [Bacillus cereus Rock1-15]
 gi|228700655|gb|EEL53178.1| Lipoyl synthase [Bacillus cereus Rock4-2]
 gi|228710440|gb|EEL62413.1| Lipoyl synthase [Bacillus cereus F65185]
 gi|228722579|gb|EEL73967.1| Lipoyl synthase [Bacillus cereus AH676]
 gi|228798426|gb|EEM45419.1| Lipoyl synthase [Bacillus thuringiensis serovar pakistani str.
           T13001]
 gi|228804374|gb|EEM50985.1| Lipoyl synthase [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
 gi|228835835|gb|EEM81198.1| Lipoyl synthase [Bacillus thuringiensis serovar huazhongensis BGSC
           4BD1]
 gi|296326463|gb|ADH09391.1| lipoyl synthase [Bacillus thuringiensis BMB171]
          Length = 298

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 38/214 (17%), Positives = 77/214 (35%), Gaps = 13/214 (6%)

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           ++V ++ +  +I +    RK     F+ +   C + C FC V      E+   L +    
Sbjct: 37  HTVCEEAKCPNIHECWAVRK--TATFMILGAVCTRACRFCAVKTGLPTEL--DLQEPERV 92

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
           A  ++  G+  + +        R    DG    F++ + ++        +    S    +
Sbjct: 93  ADSVVQMGLKHVVITAV----ARDDLKDGGAAVFAETVRAVRRKNPFTSIEVLPSDMGGV 148

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
            + L         ++ +    V+  SD     +  R       + + R + ++PDI   S
Sbjct: 149 EENLKMLMDAKPDILNHNIETVRRLSD----RVRARAKYERSLEFLRRAKEMQPDIPTKS 204

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
             +VG  GET +D    MD +           +Y
Sbjct: 205 SIMVGL-GETREDLIEAMDDLRANNVDILTLGQY 237


>gi|95931200|ref|ZP_01313922.1| Putative oxygen-independent coproporphyrinogen III oxidase
           [Desulfuromonas acetoxidans DSM 684]
 gi|95132762|gb|EAT14439.1| Putative oxygen-independent coproporphyrinogen III oxidase
           [Desulfuromonas acetoxidans DSM 684]
          Length = 386

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 37/230 (16%), Positives = 74/230 (32%), Gaps = 13/230 (5%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C +C        E+ R    V+       D  +       +  +     G      
Sbjct: 20  CRQKCPYCD----FYSEVDRDGDLVLYVDALCRDLELSCAWYGAEPFSTVFFGGGTPSLL 75

Query: 246 TFSDLLYSLSEIK---GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
               +   L++++   GL      +      +      HG     +  L + VQS  D  
Sbjct: 76  PPDQVERILNQVQRFYGLSADVEVSMEVNPGTVDCQGLHGYHQAGVNRLSIGVQSFDDDQ 135

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           L+ + R H + +   ++D  R    +  ++ D +   PG+++     +   + ++     
Sbjct: 136 LRWLRRIHDSRQALALVDEARRAGFE-RLNLDLMFALPGQSEASMVESCRRIAQLDVEHV 194

Query: 363 FSFKYSPRLGTP-----GSNMLEQVDENVKAERLLCLQKKLREQQVSFND 407
             +  S   GTP      S    Q DE       L L ++L        +
Sbjct: 195 AIYGLSVEPGTPLAAAEASGRWSQSDEADYQRHYLTLSEQLIRHGFDHYE 244


>gi|15894561|ref|NP_347910.1| coproporphyrinogen III oxidase [Clostridium acetobutylicum ATCC
           824]
 gi|15024207|gb|AAK79250.1|AE007640_5 Coproporphyrinogen III oxidase [Clostridium acetobutylicum ATCC
           824]
 gi|325508693|gb|ADZ20329.1| coproporphyrinogen III oxidase [Clostridium acetobutylicum EA 2018]
          Length = 374

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 41/199 (20%), Positives = 79/199 (39%), Gaps = 14/199 (7%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVC---EITLLGQNVNAWRGKGLDG 242
           C   C +C  P    IE       ++  A+ L                 +       L  
Sbjct: 13  CKSKCLYCDFPSYACIE-----DYMIPYAKALCTEIEKASINKVFSSIFIGGGTPSFLSI 67

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTS-HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
           E    + L  +L +++    + +T   +P   ++  +    D+   +  L + +Q+  DR
Sbjct: 68  E--ALNILCDALKKVRKTKDVEFTVEGNPNSFTEKKLMVFKDMG--VNRLSIGLQACQDR 123

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
           +LK + R HT  E+     R R++  +  I+ D + G P +T +DF+ +++ + K+    
Sbjct: 124 LLKKLGRIHTLKEFTVAFKRARNLGFN-NINVDLMFGIPDQTLEDFKESLEFITKLKPEH 182

Query: 362 AFSFKYSPRLGTPGSNMLE 380
             S+      GTP   M E
Sbjct: 183 ISSYSLIVEEGTPYFKMNE 201


>gi|115523823|ref|YP_780734.1| radical SAM domain-containing protein [Rhodopseudomonas palustris
           BisA53]
 gi|115517770|gb|ABJ05754.1| Radical SAM domain protein [Rhodopseudomonas palustris BisA53]
          Length = 528

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 53/362 (14%), Positives = 114/362 (31%), Gaps = 52/362 (14%)

Query: 57  NSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEE 116
           +  + A+ + ++  HI+    +++     R             DL V + G    A  + 
Sbjct: 71  DDFEWAEAVFVSGMHIQ---RQQMIDICRRAHEF---------DLAVAIGGPSVSACPD- 117

Query: 117 ILRRSPIVNVVVGPQTYYRLPELLER--ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKR 174
                P  + +   +      EL+ R      +       + ED+ +        Y    
Sbjct: 118 ---HYPTFDYLHVGELGDATNELIARLAHDPSRPRRQVILTTEDRLDMTLFPIPAYELAE 174

Query: 175 GVTAF---LTIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVC-EITLLG 229
               F   +    GC   C FC +P   G     ++  Q++ E  ++++ G+   +  + 
Sbjct: 175 CSKYFLGSIQYSSGCPYQCEFCDIPGLYGRNPRLKTPEQIITELDRMLECGIQGSVYFVD 234

Query: 230 QNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL----VRLRYTTSHPRDMSDCLIKAHGDLD 285
            N          G +    DLL  L E +      +RL    +        +++      
Sbjct: 235 DNFI--------GNRKAALDLLPHLVEWQKKTGFSIRLACEATLNIAKRPEILELMRQ-- 284

Query: 286 VLMPYLHLPVQSGSDRILKSMNRRHTAY-EYRQIIDRIRSVRPDIAISSDFIVGFPGETD 344
                +   +++     L +MN+ H       + I+ I S    I + S  I+G   +  
Sbjct: 285 AYFTTIFCGIETPEPEALHAMNKDHNMMVPIMEGIETISSY--GIEVVSGIILGLDTDKA 342

Query: 345 DDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVS 404
           +     +  +++                TP              +RL   Q+ + ++   
Sbjct: 343 ETGSNLLHFIEQSQIPLLTINLLQALPKTPL------------WDRLEREQRLIHDESRD 390

Query: 405 FN 406
            N
Sbjct: 391 SN 392


>gi|153838414|ref|ZP_01991081.1| radical SAM protein, family [Vibrio parahaemolyticus AQ3810]
 gi|149748177|gb|EDM59036.1| radical SAM protein, family [Vibrio parahaemolyticus AQ3810]
          Length = 317

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 47/232 (20%), Positives = 80/232 (34%), Gaps = 23/232 (9%)

Query: 181 TIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL 240
           TI  G    CTFC V      E+   +  + ++ +            L            
Sbjct: 39  TIGRG---GCTFCNVASFADEEV--QIKSIHEQLKDRAGEIHRAKKYLA---YFQAYTST 90

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV--LMPYLHLPVQSG 298
             E     ++     +   +V L    + P  + D ++    D        +L L +Q+ 
Sbjct: 91  YAEVQVLKNMYEEALKAADIVGL-CVGTRPDCVPDSVLDLLSDYVNQGYEIWLELGLQTA 149

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           ++  LK +NR H    Y +I  R R++   I + +  IVG P ET DD   T+  V  +G
Sbjct: 150 NNDTLKRINRGHDFECYAEITQRARAL--GIKVCTHLIVGLPKETRDDNIETLQKVLAVG 207

Query: 359 YAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACV 410
                        G+  +          KA R   L+    E+ V+     +
Sbjct: 208 TDGIKLHGLHIVEGSTMA----------KAWRAGRLEAPGLEEYVAIASEMI 249


>gi|73748198|ref|YP_307437.1| radical SAM domain-containing protein [Dehalococcoides sp. CBDB1]
 gi|73659914|emb|CAI82521.1| radical SAM domain protein [Dehalococcoides sp. CBDB1]
          Length = 544

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 50/313 (15%), Positives = 105/313 (33%), Gaps = 37/313 (11%)

Query: 116 EILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVD-------- 167
           E     P +  V+          +LER      +       E   ER+   +        
Sbjct: 166 EAEAILPELLAVLSETAGESKGLILERLAKIPGLYVPSIPPEQPVERVFPSELTQGVGTA 225

Query: 168 -GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEIT 226
                 + G    + ++ GC   C FC+V           L  ++ +A + +      I 
Sbjct: 226 VFSTATELGEMYLMEVERGCGHQCRFCLVAGVFCPLRYHPLELLLKQAEEGMLK-RKRIG 284

Query: 227 LLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV 286
           L+G  V+         +    ++L+  L  +     L  ++   + +S+ ++        
Sbjct: 285 LVGPVVS---------DHPQVTELVSRLRNMD--FGLSVSSLRIKPLSEKMLDELALSG- 332

Query: 287 LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA-ISSDFIVGFPGETDD 345
            +  L +  ++GS+R+ + + +  T  +  +    +         +   F++G PGE D+
Sbjct: 333 -VSSLAMAPEAGSERLRRIIRKGITEDDIIRAAALVAEK--GFRQLKFYFMLGLPGEADE 389

Query: 346 DFRATMDLVDKIGYA----------QAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQ 395
           D    + L +K   A                + P+  TP    L   D  +   RL  ++
Sbjct: 390 DVEEMIVLAEKAQQAMSSKGRGVRLSLNIAPFVPKPATP-FQWLGMEDAALIKRRLDTIR 448

Query: 396 KKLREQQVSFNDA 408
            +L  Q +     
Sbjct: 449 LRLEGQGIEVRAE 461


>gi|237746929|ref|ZP_04577409.1| Mg-protoporphyrin IX monomethyl ester oxidative cyclase
           [Oxalobacter formigenes HOxBLS]
 gi|229378280|gb|EEO28371.1| Mg-protoporphyrin IX monomethyl ester oxidative cyclase
           [Oxalobacter formigenes HOxBLS]
          Length = 500

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 42/256 (16%), Positives = 79/256 (30%), Gaps = 9/256 (3%)

Query: 122 PIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTA--- 178
            + + V+       LP L       +R  +  +          I+   +     +     
Sbjct: 105 ELADYVIKGWGEVTLPWLCRNILENRRPANKIHEGVQAALDSLIMPYSFYTAEDIAHRTL 164

Query: 179 FLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK 238
           ++    GC   C FC+    +         + + E   L   G      + +  N    +
Sbjct: 165 YVEASRGCPFRCEFCLSSLDKTAWT-FDTEKFLHEMETLYQRGARSFKFVDRTFNLNVKR 223

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
            L          L  L    G     +    P  + D L  A          L + VQ+ 
Sbjct: 224 SLQ----ILHFFLEKLENESGNPIFVHFELVPDHLPDALKDAISRFPPGTLQLEIGVQTF 279

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           +  +  +++R+    +  + +  + S      + +D IVG PGE    F    D + +IG
Sbjct: 280 NPEVQANISRKQDNKKSEENLRWL-SRHSHAHLHADLIVGLPGEDIASFGRGFDRLVRIG 338

Query: 359 YAQAFSFKYSPRLGTP 374
             +          GTP
Sbjct: 339 PDEIQVGILKRLRGTP 354


>gi|298530328|ref|ZP_07017730.1| conserved hypothetical protein [Desulfonatronospira thiodismutans
           ASO3-1]
 gi|298509702|gb|EFI33606.1| conserved hypothetical protein [Desulfonatronospira thiodismutans
           ASO3-1]
          Length = 320

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 39/213 (18%), Positives = 66/213 (30%), Gaps = 40/213 (18%)

Query: 187 DKFCTFC------------------VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLL 228
           DK C FC                     Y R   +SR    +     +   N        
Sbjct: 39  DKGCIFCNPAGSGTGLYSSGMSLEQQYQYWRTKYLSRHPEALFAAYLQSFSNTY------ 92

Query: 229 GQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLM 288
                        G      + L  L+ + GL  +  T + P  +    ++         
Sbjct: 93  -------------GPAFRIKNCLKELASLPGLE-VLCTGTRPDCLDQEKMRILAGFQAKE 138

Query: 289 PYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFR 348
            +L + +QS     LK +NR HT  ++        + R  + + +  I G PGE  +DF 
Sbjct: 139 TWLEMGLQSSRPETLKRINRGHTPDDFAHACRM--AHREGLKVCAHVIAGLPGENLEDFL 196

Query: 349 ATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
            T+D ++ +               TP +    Q
Sbjct: 197 ETVDFINLLPVQGIKVHNIYVCKNTPLAGWWRQ 229


>gi|227504546|ref|ZP_03934595.1| coproporphyrinogen dehydrogenase [Corynebacterium striatum ATCC
           6940]
 gi|227198866|gb|EEI78914.1| coproporphyrinogen dehydrogenase [Corynebacterium striatum ATCC
           6940]
          Length = 347

 Score = 63.4 bits (153), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 53/122 (43%), Gaps = 6/122 (4%)

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
           + L +QS SD +L+ + R HT           R+   +  ++ D I G P ETDDD R T
Sbjct: 90  VSLGMQSASDSVLRVLERAHTPGRAFDAAREARAAGFE-HVNLDMIYGTPTETDDDVRLT 148

Query: 351 MDLVDKIGYAQAFSFKYSPRLGTPGSN-----MLEQVDENVKAERLLCLQKKLREQQVSF 405
           +D V + G     ++      GT  +      +L   DE+V A R   +   L  +   +
Sbjct: 149 LDRVLETGVDHVSAYSLIVEDGTRMARKVNKGLLPAPDEDVLARRYEAVSATLEAEGFEW 208

Query: 406 ND 407
            +
Sbjct: 209 YE 210


>gi|34495541|ref|NP_899756.1| hypothetical protein CV_0086 [Chromobacterium violaceum ATCC 12472]
 gi|34101396|gb|AAQ57765.1| conserved hypothetical protein [Chromobacterium violaceum ATCC
           12472]
          Length = 622

 Score = 63.4 bits (153), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 37/192 (19%), Positives = 69/192 (35%), Gaps = 26/192 (13%)

Query: 180 LTIQEGCDKF-CTFCVVPYTRGIEISR----SLSQVVDEARKLIDNGVCEITLLGQNVNA 234
           LTI  GC    C+FC V       ISR    S   +VD    +I          GQ    
Sbjct: 352 LTIAHGCYWKKCSFCDVTL---DYISRYETASAELLVDRIEAIIAE-------TGQTGFH 401

Query: 235 WRGKGLDGE--KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLH 292
           +  +    +  K    +LL     I     +R+     +  +  L +   +   +   + 
Sbjct: 402 FVDEAAPPKMLKALAEELLRRKVSISWWGNIRF----EKSFTPELAQLLAESGCIA--IS 455

Query: 293 LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352
             ++  SDR+LK M +  +  +  ++          I + +  + GFP +T  D    ++
Sbjct: 456 GGLEVASDRLLKLMKKGVSVEQVARVTHGFAEA--GILVHAYLMYGFPTQTVQDTVDALE 513

Query: 353 LVDKIGYAQAFS 364
            V ++ +     
Sbjct: 514 YVRQL-FDHGCI 524


>gi|226952317|ref|ZP_03822781.1| radical SAM N-terminal domain protein [Acinetobacter sp. ATCC
           27244]
 gi|226836929|gb|EEH69312.1| radical SAM N-terminal domain protein [Acinetobacter sp. ATCC
           27244]
          Length = 794

 Score = 63.4 bits (153), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 48/264 (18%), Positives = 85/264 (32%), Gaps = 35/264 (13%)

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRG---VTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRS 206
           + DY  +  + RL     G  R      +   + I  GC   CTFC +    G  I +RS
Sbjct: 386 EMDYVFDLPYARLPHPAYGNARFPAFDMIKFSVNIMRGCFGGCTFCSITEHEGRIIQNRS 445

Query: 207 LSQVVDEARKLIDNGVCEITLLGQ------NVNAWRGKGLDGEK---------------- 244
              ++ E  K+ D       ++        N+        + EK                
Sbjct: 446 EESILREIEKIRDTAPQFTGIISDLGGPTANMYRLHCNDPEIEKNCRKPSCVYPGVCQNL 505

Query: 245 ----CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL--DVLMPYLHLPVQSG 298
                    L     EIKG+ ++   +    D++    +   +L    +  YL +  +  
Sbjct: 506 HTDHAPLVQLYRKAREIKGVKKILIGSGLRYDLAVLNPEYVKELVQHHVGGYLKIAPEHT 565

Query: 299 SDRILKSMNRR--HTAYEYRQIIDRI-RSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
               L  M +    T   ++Q+ +R  +    +  +   FI   PG TD D       + 
Sbjct: 566 EHGPLSKMMKPGIGTYDRFKQMFERFSKEAGKEQYLIPYFIAAHPGTTDYDMMNLAIWLK 625

Query: 356 KIGYAQAFSFKYSPRLGTPGSNML 379
           K G+       + P      + M 
Sbjct: 626 KNGFRADQVQTFYPSPMATATTMY 649


>gi|145298084|ref|YP_001140925.1| lipoyl synthase [Aeromonas salmonicida subsp. salmonicida A449]
 gi|166226343|sp|A4SJV5|LIPA_AERS4 RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|142850856|gb|ABO89177.1| lipoic acid synthetase [Aeromonas salmonicida subsp. salmonicida
           A449]
          Length = 326

 Score = 63.4 bits (153), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 29/182 (15%), Positives = 66/182 (36%), Gaps = 10/182 (5%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V    G  ++    +    A  + + G+  + +   +    R    DG   
Sbjct: 94  CTRRCPFCDV--AHGRPLALDPDEPQKLALTIKEMGLKYVVITSVD----RDDLRDGGAQ 147

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
            F+D +  + E     R+   T   R   +  ++   +     P +       + R+ + 
Sbjct: 148 HFADCIKQIREHSPQTRIEILTPDFRGRMEQALEVFRETP---PDVFNHNLETAPRMYRV 204

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
                      +++ RI+ + P +   S  ++G  GET+++    +  + + G       
Sbjct: 205 ARPGADYKWSLELLRRIKEMHPHVPTKSGVMMGL-GETNEEIVQVLKDLREHGVNMLTLG 263

Query: 366 KY 367
           +Y
Sbjct: 264 QY 265


>gi|187476654|ref|YP_784677.1| lipoyl synthase [Bordetella avium 197N]
 gi|123725157|sp|Q2L1D8|LIPA_BORA1 RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|115421240|emb|CAJ47745.1| lipoyl synthase [Bordetella avium 197N]
          Length = 331

 Score = 63.4 bits (153), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 43/250 (17%), Positives = 89/250 (35%), Gaps = 19/250 (7%)

Query: 126 VVVGPQTYYRLPELLE--RARFGKRVVDT-----DYSVEDKFERLSIVDGGYNRKRGVTA 178
           + V P    + PE +    A  G R  D      ++++    E  S  + G    +G   
Sbjct: 37  IKVIPAERLKKPEWIRVRAAAPGSRFYDIKRILREHNLHTVCEEASCPNIGECFGKGTAT 96

Query: 179 FLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK 238
           F+ + + C + C FC V + R   +     +  + AR +    +  + +   +    R  
Sbjct: 97  FMIMGDKCTRRCPFCDVGHGRPDPL--DAQEPENLARTIAALKLSYVVITSVD----RDD 150

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD-MSDCLIKAHGDLDVLMPYLHLPVQS 297
             DG    F + +  + E+  + R+       R  +   L   +     +M +    V  
Sbjct: 151 LRDGGAAHFVECITKIRELSPITRIEVLVPDFRGRLDRALAILNAGPPDVMNHNLETV-- 208

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
              R+ K            +++   +++ PD+   S  ++G  GETD++    M  +   
Sbjct: 209 --PRLYKQARPGSDYLHSLKLLAEFKALHPDVPTKSGLMLGL-GETDEEILEVMRDMRAH 265

Query: 358 GYAQAFSFKY 367
                   +Y
Sbjct: 266 NVDMITIGQY 275


>gi|269793018|ref|YP_003317922.1| Radical SAM domain-containing protein [Thermanaerovibrio
           acidaminovorans DSM 6589]
 gi|269100653|gb|ACZ19640.1| Radical SAM domain protein [Thermanaerovibrio acidaminovorans DSM
           6589]
          Length = 614

 Score = 63.4 bits (153), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 55/322 (17%), Positives = 110/322 (34%), Gaps = 61/322 (18%)

Query: 158 DKFERLSIVDGGYNRKRGVTA-------FLTIQEGCDKFCTFCVVPYTRGIEIS-RSLSQ 209
           D+  +L  V   + R R            +T   GC   C+FC +   +G  I  RS+  
Sbjct: 271 DRIYQLPFVGLPHPRYRQPIPALEEVRFSVTAHRGCIGDCSFCAIGVHQGKNIQPRSIRS 330

Query: 210 VVDEARKLIDNGVCEITLL----------------GQNVNAWRGK---------GLDGEK 244
           VV E ++ + +   +  +                    +   +G+          L+   
Sbjct: 331 VVREVQRFLQSKDFKGVVSDVGGPSANFHQMPCSKADRLGVCQGRSCLRPNPCPNLEARH 390

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY-----LHLPVQSGS 299
             + ++L ++  I G+ R+   +         ++     L  L  +     + +  +  S
Sbjct: 391 REYFEMLRAVRSIPGVKRVFVRS--GVRYDYLMMDHPSYLRELCEHHVSGQMRVAPEHLS 448

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPD-IAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           DR+ + MN+        Q +DR R      + +    +   PG T +D       + ++ 
Sbjct: 449 DRVTEVMNKP-PREVLLQFMDRFRGCSGGRLFLVHYIMTSHPGCTLEDAVEMAVWLKRLR 507

Query: 359 YAQAFSFKYSPRLGTPGSNML----EQVDE---NVKAERLLCLQKKLREQQVSFNDACVG 411
                   ++P   T  + M     + +     +V   R   LQ+ L +  V  N     
Sbjct: 508 IRPREVQDFTPTPMTRSTCMYATGMDPMTGRRVHVPKGRERRLQRALAQYWVEENRP--- 564

Query: 412 QIIEVLIEKHGKEKGKLVGRSP 433
                L+E+      +LVGR+ 
Sbjct: 565 -----LVEEAL----RLVGRTD 577


>gi|41019299|gb|AAR98557.1| GntK [Micromonospora echinospora]
 gi|45544467|emb|CAF34037.1| putative methyltransferase [Micromonospora echinospora]
 gi|85814024|emb|CAF31440.1| putative gentamicin C-methyltransferase [Micromonospora
           echinospora]
          Length = 638

 Score = 63.4 bits (153), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 56/363 (15%), Positives = 113/363 (31%), Gaps = 60/363 (16%)

Query: 41  SLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGD 100
           + R+E    +          +AD++ + +C            +      L     +   +
Sbjct: 98  TERIEAALAA---------SEADVVGI-SCMFTP--------YYESAYELARMAKRVLPN 139

Query: 101 LLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVD---TDYSVE 157
             V+V G         +L   P V+ V+  +       LL+    G+ + +     +   
Sbjct: 140 AKVIVGGQHGTVAFPHVL-EVPEVDAVMLGEAEVTTVALLDAFATGRPLTELLGVAFRCG 198

Query: 158 DKFERLSIVDGGYNRKR-----------------------GVTAFLTIQEGCDKFCTFCV 194
           +     +     + R R                       G    L    GC   C+FC 
Sbjct: 199 EGLCECATPGTPHIRPRAPFVADLDSLAPPAADQLDFDRYGNAVTLITSRGCPFSCSFCT 258

Query: 195 VPYTRGI-EISRSLSQVVDEARKLID-NGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLY 252
           V  T G    +R   +VVDE    ++ +GV    +   N           +      +  
Sbjct: 259 VHATVGKQFRARDPQRVVDEIEHYVNVHGVRRFLVEDDNFTF--------DIERVHAICQ 310

Query: 253 SLSEIKGLVRLRYTT-SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
            +   K  VRL          +++ L+++   +      L L +++     L+ M +  T
Sbjct: 311 EIVRRKLDVRLSLPNGMTVVKLTEDLVESM--VSAGFDDLFLGLETTDAARLRKMRKGFT 368

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
           + +       +      +  S+  IVG P ++ D        +   G     +  + P  
Sbjct: 369 SLDKVSAGVALFEKF-GLTASAAIIVGLPDQSLDAIVQDAVNLVLAGVEFW-TNPFYPIY 426

Query: 372 GTP 374
           G+P
Sbjct: 427 GSP 429


>gi|307354673|ref|YP_003895724.1| Radical SAM domain-containing protein [Methanoplanus petrolearius
           DSM 11571]
 gi|307157906|gb|ADN37286.1| Radical SAM domain protein [Methanoplanus petrolearius DSM 11571]
          Length = 481

 Score = 63.4 bits (153), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 64/379 (16%), Positives = 130/379 (34%), Gaps = 63/379 (16%)

Query: 45  EDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLL 102
            ++    GY   + ++  + D+ +++         E  +  L   R  K        +  
Sbjct: 48  LELSLDSGYRIKDDLEKTEFDIALID-----LHWHEHAFGALELARLCKE----IRPECY 98

Query: 103 VVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR-----------------F 145
           VV+ G  A    ++I+     V+ V+       L EL+                      
Sbjct: 99  VVIGGFTASYFSDQIISDHEYVDFVISGDGEKPLLELVSATSGGGTEKISSVSNLTYRSS 158

Query: 146 GKRVVDTDY---------------SVEDKFERLSIVDGGYNR-KRGVTAFLTIQEGCDKF 189
           GK + +                  S++   E L      Y+R +   + +L + +GC   
Sbjct: 159 GKVITNPVSYTADDAYSANYSDITSLKHWEEYLKCNIHFYSRGQFWYSYWLCVAKGCVFD 218

Query: 190 CTFC-------VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG 242
           C+FC          + R     R   QV D  R L   GV  +          +  G++ 
Sbjct: 219 CSFCGGGKNAHQQIFNRNHLFFREKKQVTDNIRHLAGLGVHTVNFSHD----IQMAGVEY 274

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
            +   SD+    ++I     +   +      ++   +      +    L     SG++ +
Sbjct: 275 WESLLSDIGK--NDIDIGAYIELNSLSTPAFAEKFAETFS---LNYSTLVFSPLSGNEEV 329

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
                + ++  +  + ++ + S++  I  +  F  GFP ET++ F  T++L +K+     
Sbjct: 330 RAKNGKGYSNSDLLKNVELMESLK--IPYAVYFAAGFPFETEESFNETLELAEKLSSGSM 387

Query: 363 FSFKYS-PRLGTPGSNMLE 380
               +S P    PGS M  
Sbjct: 388 LKMIFSTPLTLDPGSPMFN 406


>gi|282900400|ref|ZP_06308350.1| Putative oxygen-independent coproporphyrinogen III oxidase
           [Cylindrospermopsis raciborskii CS-505]
 gi|281194713|gb|EFA69660.1| Putative oxygen-independent coproporphyrinogen III oxidase
           [Cylindrospermopsis raciborskii CS-505]
          Length = 388

 Score = 63.4 bits (153), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 40/208 (19%), Positives = 79/208 (37%), Gaps = 16/208 (7%)

Query: 175 GVTAFLTIQEGCDKFCTFCVVP-YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVN 233
              A++ I   C + C +C  P Y  G  +S    +      + +D+   EI++      
Sbjct: 6   PTAAYVHIPF-CRRRCFYCDFPVYVTGDRVS---GEASHTISQYVDSICHEISITPTFSE 61

Query: 234 AWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY--- 290
             R     G   +       L +I   +  R+      ++S  +     DL  +  Y   
Sbjct: 62  PLRTVFFGGGTPSL-LSAKQLEQILSSLEQRFAMESKIEISMEIDPGTFDLARIQGYKNA 120

Query: 291 ----LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV-RPDIAISSDFIVGFPGETDD 345
               + L VQ+ +  +LK+  R H+  +    ID +  V  P+ +I  D I G P ++ +
Sbjct: 121 GVNRVSLGVQTFTPELLKTAGRSHSVEDIFAAIDIVNQVEIPEFSI--DLISGLPHQSIE 178

Query: 346 DFRATMDLVDKIGYAQAFSFKYSPRLGT 373
            ++ ++    +I       +  +   GT
Sbjct: 179 QWQNSLTKGVEIAPTHISIYDLTIEPGT 206


>gi|224026171|ref|ZP_03644537.1| hypothetical protein BACCOPRO_02927 [Bacteroides coprophilus DSM
           18228]
 gi|224019407|gb|EEF77405.1| hypothetical protein BACCOPRO_02927 [Bacteroides coprophilus DSM
           18228]
          Length = 603

 Score = 63.4 bits (153), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 45/277 (16%), Positives = 88/277 (31%), Gaps = 56/277 (20%)

Query: 151 DTDYSVEDKFERLSIVDGGYNR---KRGVTAFLTIQEGCDKFCTFCVVPYTRGIE-ISRS 206
           + D S +  + RL        R      +   + I  GC   C FC +   +G   +SRS
Sbjct: 274 ELDMSFDLPYTRLPHPKYKGKRIPAYDMIKFSVNIHRGCFGGCAFCTISAHQGKFIVSRS 333

Query: 207 LSQVVDEAR---KLIDNGVCEITLLGQNVNAWRGKGLDGEKCT----------------- 246
              ++ E +   ++ D       L G + N +R KG D + C                  
Sbjct: 334 KESILKEVKAITEMPDFKGYLSDLGGPSANMYRMKGKDEQLCRRCKRPSCIHPKVCPNLN 393

Query: 247 -----FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL---------- 291
                  D+ +++  + G+ +          +   L+        +              
Sbjct: 394 TDHRPLLDIYHAVDALPGIKKSFIG----SGVRYDLLLHQSKDPEVNKSTAAYTRELITR 449

Query: 292 ------HLPVQSGSDRILKSMNRR-----HTAYEYRQIIDRIRSVRPDIAISSDFIVGFP 340
                  +  +  SDR+L  M +      +        ++R  ++R  I     FI   P
Sbjct: 450 HVSGRLKVAPEHTSDRVLYLMRKPPFEQFYQFKNIFDKLNRELNLRQQIIPY--FISSHP 507

Query: 341 GETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
           G T++D      +  K+ +       ++P   T  + 
Sbjct: 508 GCTEEDMAELAVITRKLDFHLEQVQDFTPTPMTVATE 544


>gi|42784155|ref|NP_981402.1| lipoyl synthase [Bacillus cereus ATCC 10987]
 gi|52140559|ref|YP_086270.1| lipoyl synthase [Bacillus cereus E33L]
 gi|206976480|ref|ZP_03237387.1| lipoic acid synthetase [Bacillus cereus H3081.97]
 gi|217962437|ref|YP_002341009.1| lipoyl synthase [Bacillus cereus AH187]
 gi|222098422|ref|YP_002532480.1| lipoyl synthase [Bacillus cereus Q1]
 gi|229141690|ref|ZP_04270220.1| Lipoyl synthase [Bacillus cereus BDRD-ST26]
 gi|229199120|ref|ZP_04325803.1| Lipoyl synthase [Bacillus cereus m1293]
 gi|81568766|sp|Q72YB2|LIPA_BACC1 RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|81685625|sp|Q631Z7|LIPA_BACCZ RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|226737634|sp|B7HUW3|LIPA_BACC7 RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|254809153|sp|B9J3H2|LIPA_BACCQ RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|42740086|gb|AAS44010.1| lipoic acid synthetase [Bacillus cereus ATCC 10987]
 gi|51974028|gb|AAU15578.1| lipoic acid synthetase [Bacillus cereus E33L]
 gi|206745404|gb|EDZ56804.1| lipoic acid synthetase [Bacillus cereus H3081.97]
 gi|217064595|gb|ACJ78845.1| lipoic acid synthetase [Bacillus cereus AH187]
 gi|221242481|gb|ACM15191.1| lipoic acid synthetase [Bacillus cereus Q1]
 gi|228584391|gb|EEK42526.1| Lipoyl synthase [Bacillus cereus m1293]
 gi|228641758|gb|EEK98059.1| Lipoyl synthase [Bacillus cereus BDRD-ST26]
 gi|324328903|gb|ADY24163.1| lipoyl synthase [Bacillus thuringiensis serovar finitimus YBT-020]
          Length = 298

 Score = 63.4 bits (153), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 38/214 (17%), Positives = 79/214 (36%), Gaps = 13/214 (6%)

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           ++V ++ +  +I +    RK     F+ +   C + C FC V      E+   L +    
Sbjct: 37  HTVCEEAKCPNIHECWAVRK--TATFMILGAVCTRACRFCAVKTGLPTEL--DLQEPERV 92

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
           A  ++  G+  + +        R    DG    F++ + ++        +    S    +
Sbjct: 93  ADSVVQMGLKHVVITAV----ARDDLKDGGAAVFAETVRAVRRKNPFTSIEVLPSDMGGV 148

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
            + L         ++ +    V+  SDR+      ++      + + R + ++PDI   S
Sbjct: 149 EENLKMLMDAKPDILNHNIETVRRLSDRV--RARAKYDRS--LEFLRRAKEMQPDIPTKS 204

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
             +VG  GET +D    MD +           +Y
Sbjct: 205 SIMVGL-GETREDLIEAMDDLRANNVDILTLGQY 237


>gi|87125223|ref|ZP_01081069.1| hypothetical protein RS9917_07395 [Synechococcus sp. RS9917]
 gi|86166992|gb|EAQ68253.1| hypothetical protein RS9917_07395 [Synechococcus sp. RS9917]
          Length = 524

 Score = 63.4 bits (153), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 57/331 (17%), Positives = 116/331 (35%), Gaps = 39/331 (11%)

Query: 62  ADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRS 121
           A+L+V++   ++    + +   +   +            L V V G  A +  +      
Sbjct: 66  AELVVISGMIVQ---KDDMQCQIAEAKR---------RGLPVAVGGPYASSTPD--APEI 111

Query: 122 PIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAF-- 179
              +  V  +    LP  +E  + G R     +S E     ++           + A+  
Sbjct: 112 ADADFKVLDEGEITLPMFVEAIQRGDR--SGRFSAEGDKPDVTSTPIPRFDLLELDAYDS 169

Query: 180 --LTIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNG-VCEITLLGQNVNAW 235
             +    GC   C FC +    G +  +++  Q++ E + L D G    I L+  N    
Sbjct: 170 MSVQFSRGCPFNCEFCDIIVLYGRKPRTKTPEQLIAELQSLYDLGWRRSIFLVDDNFI-- 227

Query: 236 RGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT----TSHPRDMSDCLIKAHGDLDVLMPYL 291
                 G K     LL  +   +      ++     S      + +++   +       +
Sbjct: 228 ------GNKRNAKLLLPQIKAWQEERGYPFSFATEASVDLADDEEMMRMMHEAR--FESV 279

Query: 292 HLPVQSGSDRILKSMNR-RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
            L +++  +  L++  + ++T       +DRI +    I + + FI+GF GE     R  
Sbjct: 280 FLGIETPDESSLETARKVQNTRNPLDAAVDRITAN--GIRVMAGFIIGFDGEQSGAGRRI 337

Query: 351 MDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +D V + G   A          T   + LE+
Sbjct: 338 VDFVTRTGIPAAMMGMLQALPNTALWHRLEK 368


>gi|257469646|ref|ZP_05633738.1| biotin synthase [Fusobacterium ulcerans ATCC 49185]
 gi|317063882|ref|ZP_07928367.1| biotin synthase [Fusobacterium ulcerans ATCC 49185]
 gi|313689558|gb|EFS26393.1| biotin synthase [Fusobacterium ulcerans ATCC 49185]
          Length = 361

 Score = 63.4 bits (153), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 58/320 (18%), Positives = 115/320 (35%), Gaps = 46/320 (14%)

Query: 134 YRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYN-------RKRGVTAFLTIQEGC 186
            R+ E+LE+ +  +  + T   + D  E   +    Y        RK      + I   C
Sbjct: 1   MRIEEILEKEKLTRDDLITLMKITDSKELDMLYKKAYEVKTKEVGRKVYYRGLIEISNIC 60

Query: 187 DKFCTFCVVPYTRGI-EI-SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK 244
            K C +C +       E  S S  +++   + + +N    + L         G+  D E 
Sbjct: 61  IKNCNYCGIRKGNCKTERFSMSKEEIMKGVKWIYENNYGSLALQS-------GERQDDEF 113

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTS-----HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
             F +    + EIK L   R   +        +       A            L ++S +
Sbjct: 114 TDFIE--DIIKEIKKLSNGRLGITLSLGEQSYETYKRWFDAGAHR------YLLRIESTN 165

Query: 300 DRILKSMN---RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
           + + K ++    +HT    ++ ++ +R++     + +  ++G PG+T++D    +     
Sbjct: 166 EELFKKLHPQDGKHTFEVRKKCLEYLRNI--GYQVGTGVMIGLPGQTEEDLVDDILFYRD 223

Query: 357 IGYAQAFSFKYSPRLGTPGSNMLEQV--DENVKAERLLCLQKK----LREQQVSFNDACV 410
           +         Y     TP     E +   +  + E  L +       LR+  ++   A  
Sbjct: 224 MKIDMIGMGPYIIHKDTPLGQEWEHIVLPKEKRVELGLKMIAITRIFLRDVNIAATTALQ 283

Query: 411 GQIIEVLIEKHGKEKGKLVG 430
           G      ++ HG+EKG L G
Sbjct: 284 G------LDSHGREKGLLAG 297


>gi|188990140|ref|YP_001902150.1| lipoyl synthase [Xanthomonas campestris pv. campestris str. B100]
 gi|229830552|sp|B0RNP9|LIPA_XANCB RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|167731900|emb|CAP50084.1| lipoyl synthase [Xanthomonas campestris pv. campestris]
          Length = 337

 Score = 63.4 bits (153), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 43/235 (18%), Positives = 78/235 (33%), Gaps = 22/235 (9%)

Query: 161 ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS--QVVDEARKLI 218
           E  S  +       G   F+ + E C + C+FC V + R           +    A  + 
Sbjct: 82  EEASCPNIHECFSHGTATFMILGEVCTRRCSFCDVAHGRPK----PPDASEPTSLATTVA 137

Query: 219 DNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD---MSD 275
           D G+  + +   +    R    DG    F D + ++       R+   T   R    M  
Sbjct: 138 DMGLKYVVVTSVD----RDDLRDGGAQHFVDCISAIRASAPKTRIEILTPDFRGKGRMDR 193

Query: 276 CLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDF 335
            L         +  +    +++  D    ++           ++ R ++  P IA  S  
Sbjct: 194 ALEILATSPPDVFNH---NIETVPDLY-PNVRPGADYQWSLTLLQRFKAQHPTIATKSGI 249

Query: 336 IVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN--MLEQVDENVKA 388
           ++G  GET +  +AT+  +           +Y     TP  +  M     E  KA
Sbjct: 250 MLGL-GETMEQVQATLRDLRAHDVDMITIGQY--LQPTPHHHPVMRYWTPEEYKA 301


>gi|46202011|ref|ZP_00208348.1| COG1032: Fe-S oxidoreductase [Magnetospirillum magnetotacticum
           MS-1]
          Length = 502

 Score = 63.4 bits (153), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 36/217 (16%), Positives = 66/217 (30%), Gaps = 11/217 (5%)

Query: 170 YNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLG 229
           + R       +  Q GC   CTFC   Y       RS+++ VDE    +D         G
Sbjct: 166 HPRDSLAIGSVLTQRGCPFRCTFCSDQYLSQSVRYRSIARSVDEIEDKLDR-------FG 218

Query: 230 QNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV-LM 288
            N+   R            +    L   +GL      T                +     
Sbjct: 219 VNIFNIRDADFTMHNERVVEFCNELIR-RGLHNRINLTIETDSFRVIPRDTLALMKQSGF 277

Query: 289 PYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFR 348
             +   ++  +  I + + +  +     + +   R +     IS   ++GF  +T +D  
Sbjct: 278 SSIGFGIERLTPEIQRRIKKNISRSRIMENLKNCREL--GFVISVHCLIGFSFDTMEDIA 335

Query: 349 ATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
               L D++          S  +  PG++    V   
Sbjct: 336 REQALFDELADQYVDIVSASIVVACPGTSEFSAVPPE 372


>gi|327441244|dbj|BAK17609.1| Fe-S oxidoreductase [Solibacillus silvestris StLB046]
          Length = 577

 Score = 63.4 bits (153), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 46/278 (16%), Positives = 94/278 (33%), Gaps = 28/278 (10%)

Query: 99  GDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL---------ERA------ 143
            ++ +V+ G     +  E +R+   ++ ++  +      E+L         E+       
Sbjct: 82  PNVKIVLGGPEVSYDVHEWIRKHEEIDFIIMGEGEVSFKEMLRYFNGETPLEKVPGICYL 141

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKR--GVTAFLTIQEGCDKFCTFCVVPYTRGI 201
             GK  +       D  E  +      +         ++    GC   C FC+     G 
Sbjct: 142 EEGKLKIHAQPPKIDLREIATPFRFEEDLPHLGKRIQYIETSRGCPFSCQFCLSSIEVG- 200

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
               +  ++ ++ R L++NG   I  + +  N  R   ++  +    +         G+V
Sbjct: 201 VRYFNREKIKEDIRYLMNNGAKTIKFVDRTFNISRSYAMEMFQFLIDEHQ------PGVV 254

Query: 262 RLRYTTSHPRDMSDCLIKAHGDL-DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
                T+    M   +I+   D     +    + VQS +D     + RR    +  + + 
Sbjct: 255 FQFEITADI--MRPEVIQFLNDNAPKGLFRFEIGVQSTNDLTNDLVKRRQNFEKLTRTVT 312

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
            ++     I    D I G P E    FR T + V  + 
Sbjct: 313 MVKEG-GKIDQHLDLIAGLPEEDYASFRKTFNDVFAMR 349


>gi|206602775|gb|EDZ39256.1| Putative radical SAM family protein [Leptospirillum sp. Group II
           '5-way CG']
          Length = 476

 Score = 63.4 bits (153), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 41/236 (17%), Positives = 74/236 (31%), Gaps = 21/236 (8%)

Query: 160 FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI-EISRSLSQVVDEARKLI 218
               S+ D     + G  A +  + GC   C +C  P   G     R    VVDE   L+
Sbjct: 183 PPDRSLFDLSRYARAGGMANIQTKRGCPFHCKYCTYPLLEGDTFRLREAEDVVDEIESLV 242

Query: 219 DNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLI 278
                    +   V++      D       +++    +I            P  ++  L+
Sbjct: 243 TKDRIRSFFI---VDSIFNAPPDHAHRISEEIVRRKLKI-----RWSCYVTPAGLTRDLL 294

Query: 279 KAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVG 338
           +           + L   S     +  + +  +    ++      ++   + +    + G
Sbjct: 295 EVMKRAG--CDGIELGTDSAEQGAMIGLGKSFSVSHLQETTRWCNAL--SLPVCHTLLFG 350

Query: 339 FPGETDDDFRATMDLVDKIG----YAQAFSFKYSPRLGTPGSNMLEQVDENVKAER 390
            PGET    R T+  V+  G     A A    Y     TP + + E     VK  R
Sbjct: 351 GPGETLQSVRETLKTVEDTGPTAVVAMAGIRVY---PDTPLAALAESR-GLVKNRR 402


>gi|119873380|ref|YP_931387.1| radical SAM domain-containing protein [Pyrobaculum islandicum DSM
           4184]
 gi|119674788|gb|ABL89044.1| Radical SAM domain protein [Pyrobaculum islandicum DSM 4184]
          Length = 483

 Score = 63.4 bits (153), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 50/321 (15%), Positives = 105/321 (32%), Gaps = 33/321 (10%)

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           I      R +E     +V+ G    A  E +      V+ V   +       L++    G
Sbjct: 86  IEAKIPPRARERERPKLVIGGPPVTANPEPLA---EFVDAVAIGELEPLWKPLVQYLSTG 142

Query: 147 KRVVDTDYSVEDKF--------ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
           +   +  Y              + +S        +   +  + +  GC   C FC+  Y 
Sbjct: 143 EETEELYYPAYGPRPIKIAYATDAVSDYRRIPEPEAAFSLSVELARGCPYACLFCMESYI 202

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258
                 R    V+ E  +L        +++    NA            F  +L     + 
Sbjct: 203 SKPYRPRDWRVVLQETEELYKKYGIRPSIVALTANAH---------PHFKTMLRE--AVN 251

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
             V +   +     + D +++           L +  +S S+R+ K++ +  +  +  ++
Sbjct: 252 KGVPISLPSLRAELLDDEMLELIAAGGQ--KTLTIAPES-SERLRKALGKDISNKDILRV 308

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA----QAFSFKYSPRLGTP 374
           +D+   +   + I    + G P E + D    ++L+ ++G            + P+  TP
Sbjct: 309 VDKAAEL--GLKIKMYLMAGLPCEEEGDIEELINLIKEVGRMGVRLSLSVNPFIPKPQTP 366

Query: 375 G--SNMLEQVDENVKAERLLC 393
              S M        K +RL  
Sbjct: 367 FQYSAMENIKRLRDKIKRLQR 387


>gi|295695857|ref|YP_003589095.1| oxygen-independent coproporphyrinogen III oxidase [Bacillus tusciae
           DSM 2912]
 gi|295411459|gb|ADG05951.1| oxygen-independent coproporphyrinogen III oxidase [Bacillus tusciae
           DSM 2912]
          Length = 387

 Score = 63.4 bits (153), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 38/235 (16%), Positives = 82/235 (34%), Gaps = 23/235 (9%)

Query: 186 CDKFCTFCVV-PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK 244
           C + C +C    Y    E+     + V    + I            +          G  
Sbjct: 16  CARKCYYCDFNTYVAKPEV---WERFVQALVREIRALGRLY----PDTVLETVYAGGGTP 68

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL-------MPYLHLPVQS 297
              S   +   +I   +R  +  +   ++S        D + L       +  L +  QS
Sbjct: 69  SLLSCRQWQ--QIFEALRGSFHLASDAEISLEANPGTVDCEKLQVLRELGVNRLSIGAQS 126

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
            +  +L+ + R H        ++  RS     +++ D + G PG+T +D+R ++    ++
Sbjct: 127 FNRELLRKLGRSHGPEAIVHSVELARS-VGGFSLNLDLMFGIPGQTMEDWRQSLAAAVEL 185

Query: 358 GYAQAFSFKYSPRLGTPGSNMLEQ-----VDENVKAERLLCLQKKLREQQVSFND 407
           G     ++      GTP S   +Q       E+++A+    L + + +      +
Sbjct: 186 GPDHLSAYGLKVEEGTPYSRWYDQGVLDLPSEDLEAKMYTALMEFMDKTGYEQYE 240


>gi|196040433|ref|ZP_03107733.1| lipoic acid synthetase [Bacillus cereus NVH0597-99]
 gi|196043954|ref|ZP_03111191.1| lipoic acid synthetase [Bacillus cereus 03BB108]
 gi|225866942|ref|YP_002752320.1| lipoyl synthase [Bacillus cereus 03BB102]
 gi|229076350|ref|ZP_04209315.1| Lipoyl synthase [Bacillus cereus Rock4-18]
 gi|229094075|ref|ZP_04225159.1| Lipoyl synthase [Bacillus cereus Rock3-42]
 gi|229099432|ref|ZP_04230362.1| Lipoyl synthase [Bacillus cereus Rock3-29]
 gi|229118446|ref|ZP_04247800.1| Lipoyl synthase [Bacillus cereus Rock1-3]
 gi|229187208|ref|ZP_04314353.1| Lipoyl synthase [Bacillus cereus BGSC 6E1]
 gi|300119639|ref|ZP_07057181.1| lipoyl synthase [Bacillus cereus SJ1]
 gi|172044117|sp|A0RKF7|LIPA_BACAH RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|254809152|sp|C1EY56|LIPA_BACC3 RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|196025290|gb|EDX63960.1| lipoic acid synthetase [Bacillus cereus 03BB108]
 gi|196028565|gb|EDX67172.1| lipoic acid synthetase [Bacillus cereus NVH0597-99]
 gi|225788144|gb|ACO28361.1| lipoyl synthase [Bacillus cereus 03BB102]
 gi|228596218|gb|EEK53893.1| Lipoyl synthase [Bacillus cereus BGSC 6E1]
 gi|228665016|gb|EEL20504.1| Lipoyl synthase [Bacillus cereus Rock1-3]
 gi|228684056|gb|EEL38004.1| Lipoyl synthase [Bacillus cereus Rock3-29]
 gi|228689287|gb|EEL43106.1| Lipoyl synthase [Bacillus cereus Rock3-42]
 gi|228706785|gb|EEL58993.1| Lipoyl synthase [Bacillus cereus Rock4-18]
 gi|298722934|gb|EFI63834.1| lipoyl synthase [Bacillus cereus SJ1]
          Length = 298

 Score = 63.4 bits (153), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 38/214 (17%), Positives = 79/214 (36%), Gaps = 13/214 (6%)

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           ++V ++ +  +I +    RK     F+ +   C + C FC V      E+   L +    
Sbjct: 37  HTVCEEAKCPNIHECWAVRK--TATFMILGAVCTRACRFCAVKTGLPTEL--DLQEPERV 92

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
           A  ++  G+  + +        R    DG    F++ + ++        +    S    +
Sbjct: 93  ADSVVQMGLKHVVITAV----ARDDLKDGGAAVFAETVRAVRRKNPFTSIEVLPSDMGGV 148

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
            + L         ++ +    V+  SDR+      ++      + + R + ++PDI   S
Sbjct: 149 EENLKMLMDAKPDILNHNIETVRRLSDRV--RARAKYDRS--LEFLRRAKEMQPDIPTKS 204

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
             +VG  GET +D    MD +           +Y
Sbjct: 205 SIMVGL-GETREDLIEAMDDLRANNVDILTLGQY 237


>gi|331090640|ref|ZP_08339491.1| hypothetical protein HMPREF9477_00134 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330401080|gb|EGG80675.1| hypothetical protein HMPREF9477_00134 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 479

 Score = 63.4 bits (153), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 38/202 (18%), Positives = 73/202 (36%), Gaps = 18/202 (8%)

Query: 173 KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQN- 231
           + G + ++ I   C   C++C          S  + Q  +   + ++    EI+ +G+  
Sbjct: 146 ENGYSLYIGIPF-CPTTCSYCSFT-------SYPIQQWKERTDEYLEALCKEISFVGETS 197

Query: 232 ----VNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL 287
               +N     G          L   L+ ++    L        +           L+VL
Sbjct: 198 KEKKLNTIYMGGGTPTTLEAEQLDRLLTHVEKTFSLEELKEFTVEAGRPDSITEAKLEVL 257

Query: 288 MPY----LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGET 343
             +    + +  Q+   + L S+ RRHT  +  +I    R +  D  I+ D I G  GE 
Sbjct: 258 KRHHITRISINPQTMQQKTLDSIGRRHTVEDVIRIFRLARKLGFD-NINMDLIAGLTGEN 316

Query: 344 DDDFRATMDLVDKIGYAQAFSF 365
            DD R T++ + ++        
Sbjct: 317 VDDMRDTLEKIKELNPDNLTVH 338


>gi|313886412|ref|ZP_07820132.1| iron-only hydrogenase maturation rSAM protein HydE [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|312924128|gb|EFR34917.1| iron-only hydrogenase maturation rSAM protein HydE [Porphyromonas
           asaccharolytica PR426713P-I]
          Length = 349

 Score = 63.4 bits (153), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 31/231 (13%), Positives = 68/231 (29%), Gaps = 15/231 (6%)

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE-ISR-SLS 208
           DT    E +    +I +  + RK  +   + I   C   C +C +  +       R +  
Sbjct: 30  DTHLEHELQVRAEAIAEQHFGRKIYLRGLVEISNICCNDCYYCGIRSSNEHVTRYRLTAD 89

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
           +V+    +  + G     L G       G+ L         L+ S+        +  +  
Sbjct: 90  EVMSACARGYEIGFRTFVLQG-------GEDLYWRGERLLSLVRSIRSSYPECAITLSLG 142

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
                    +   G    L+ +     +       +            Q +  ++ +   
Sbjct: 143 EMECEEYEALYRAGANRYLLRHETYNQEHYQ----RLHPSTMAQEHRLQALRDLKQI--G 196

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
             + +  +VG PG+T       +D + ++         + P   TP     
Sbjct: 197 YQVGTGIMVGSPGQTTAHLAQDLDFIRQLQPEMIGVGPFIPHEDTPLGTYP 247


>gi|294648907|ref|ZP_06726361.1| Fe-S oxidoreductase [Acinetobacter haemolyticus ATCC 19194]
 gi|292825196|gb|EFF83945.1| Fe-S oxidoreductase [Acinetobacter haemolyticus ATCC 19194]
          Length = 794

 Score = 63.4 bits (153), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 48/264 (18%), Positives = 85/264 (32%), Gaps = 35/264 (13%)

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRG---VTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRS 206
           + DY  +  + RL     G  R      +   + I  GC   CTFC +    G  I +RS
Sbjct: 386 EMDYVFDLPYARLPHPAYGNARFPAFDMIKFSVNIMRGCFGGCTFCSITEHEGRIIQNRS 445

Query: 207 LSQVVDEARKLIDNGVCEITLLGQ------NVNAWRGKGLDGEK---------------- 244
              ++ E  K+ D       ++        N+        + EK                
Sbjct: 446 EESILREIEKIRDTAPQFTGIISDLGGPTANMYRLHCNDPEIEKNCRKPSCVYPGVCQNL 505

Query: 245 ----CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL--DVLMPYLHLPVQSG 298
                    L     EIKG+ ++   +    D++    +   +L    +  YL +  +  
Sbjct: 506 HTDHAPLVQLYRKAREIKGVKKILIGSGLRYDLAVLNPEYVKELVQHHVGGYLKIAPEHT 565

Query: 299 SDRILKSMNRR--HTAYEYRQIIDRI-RSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
               L  M +    T   ++Q+ +R  +    +  +   FI   PG TD D       + 
Sbjct: 566 EHGPLSKMMKPGIGTYDRFKQMFERFSKEAGKEQYLIPYFIAAHPGTTDYDMMNLAIWLK 625

Query: 356 KIGYAQAFSFKYSPRLGTPGSNML 379
           K G+       + P      + M 
Sbjct: 626 KNGFRADQVQTFYPSPMATATTMY 649


>gi|294650046|ref|ZP_06727433.1| lipoyl synthase [Acinetobacter haemolyticus ATCC 19194]
 gi|292824056|gb|EFF82872.1| lipoyl synthase [Acinetobacter haemolyticus ATCC 19194]
          Length = 337

 Score = 63.4 bits (153), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 65/208 (31%), Gaps = 12/208 (5%)

Query: 161 ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN 220
           E  +  +       G   F+ + + C + C FC V    G   +    +    A  + + 
Sbjct: 66  EEAACPNLPECFGGGTATFMIMGDICTRRCPFCDV--AHGRPNALDPDEPRHMAETISNL 123

Query: 221 GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKA 280
           G+    +   +    R   LDG    F D +     +     L       R   D  ++ 
Sbjct: 124 GLKYAVITSVD----RDDLLDGGAQHFVDCIKEARALSPKTLLEILVPDFRGRMDIALRI 179

Query: 281 HGDLDVLMPYLHLPVQSGSDRIL-KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGF 339
             +     P         +   L K+M           ++   +   PD+      +VG 
Sbjct: 180 MTE----CPPDVFNHNIETVPRLYKAMRPGSDYQHSLNLLKMFKEYCPDVPTKCGLMVGI 235

Query: 340 PGETDDDFRATMDLVDKIGYAQAFSFKY 367
            GET+++  A +D +           +Y
Sbjct: 236 -GETEEEVIALLDDLRAHDVDYVTIGQY 262


>gi|224049998|ref|XP_002189456.1| PREDICTED: lipoic acid synthetase [Taeniopygia guttata]
          Length = 394

 Score = 63.4 bits (153), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 32/183 (17%), Positives = 64/183 (34%), Gaps = 9/183 (4%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V   R         +  + A+ + + G+  + L   +    R    DG   
Sbjct: 159 CTRGCRFCSVKTARNPP-PLDPQEPYNTAKAIAEWGLDYVVLTSVD----RDDMPDGGAE 213

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
            F+  +  L E    + +   T    D    L          +      V++      K 
Sbjct: 214 HFAKTVRHLKERNPKILVECLTP---DFRGDLKAVEKVALSGLDVYAHNVETVPALQRKV 270

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
            + R    +  +++   + V+P +   +  ++G  GETD+   +TM L+ +         
Sbjct: 271 RDPRANFEQSIRVLKHAKEVQPGVISKTSIMLGL-GETDEQVYSTMKLLREADVDCLTLG 329

Query: 366 KYS 368
           +Y 
Sbjct: 330 QYM 332


>gi|254852100|ref|ZP_05241448.1| coproporphyrinogen III oxidase [Listeria monocytogenes FSL R2-503]
 gi|300765619|ref|ZP_07075598.1| oxygen-independent coproporphyrinogen III oxidase [Listeria
           monocytogenes FSL N1-017]
 gi|258605402|gb|EEW18010.1| coproporphyrinogen III oxidase [Listeria monocytogenes FSL R2-503]
 gi|300513720|gb|EFK40788.1| oxygen-independent coproporphyrinogen III oxidase [Listeria
           monocytogenes FSL N1-017]
          Length = 385

 Score = 63.4 bits (153), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 37/200 (18%), Positives = 73/200 (36%), Gaps = 10/200 (5%)

Query: 186 CDKFCTFCVV--PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
           C+  C +C     +  G  +   +  ++ E       G          V    G      
Sbjct: 21  CEHICYYCDFNKVFLEGQPVDEYVDLLIKEMELTAAKGPIAPV---DTVFVGGGTPTTLN 77

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
           +   + L  ++  I  L +    +         L K     D  +  + + VQS ++ +L
Sbjct: 78  EAQIARLCTAIHNILPLKKDIEFSFEANPGDLSLSKLQAMQDHSVNRISMGVQSFNNELL 137

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           K + R HT  +  Q ++ +R +  +  +S D I   PG+T+ DF+ T+     +      
Sbjct: 138 KKIGRIHTVKDVYQSVENMRKIGFE-NVSIDLIFSLPGQTEADFQDTLK--QALDLDLPH 194

Query: 364 SFKYS--PRLGTPGSNMLEQ 381
              YS      T   N++++
Sbjct: 195 YSAYSLIIEPKTIFYNLMQK 214


>gi|253576873|ref|ZP_04854198.1| radical SAM domain-containing protein [Paenibacillus sp. oral taxon
           786 str. D14]
 gi|251843740|gb|EES71763.1| radical SAM domain-containing protein [Paenibacillus sp. oral taxon
           786 str. D14]
          Length = 352

 Score = 63.4 bits (153), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 73/197 (37%), Gaps = 16/197 (8%)

Query: 180 LTIQEGCDKFCTFCVVPYT-RGIEISR-SLSQVVDEARKLIDNGVCEITLLGQNVNAWRG 237
           +     C + C +C +    R  E  R S  ++++  R+  + G     L         G
Sbjct: 56  IEFSSYCRRNCLYCGLRAGNREAERYRLSPEEILECCREGYELGFRTFVLQS-------G 108

Query: 238 KGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQS 297
           +         + L+  +        +  +       +  L+   G    LM +     ++
Sbjct: 109 EDPWYTADLLAALIREIKAEFPDAAITLSIGEREAETYRLLYEAGADRFLMRH-----ET 163

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
            S R+ ++++   +    RQ ++ ++S+     + + F+VG PG+T +D    ++ +  +
Sbjct: 164 ASRRLYQALHPSMSFDHRRQCLETLQSI--GYQVGAGFMVGLPGQTAEDLAEDLNYLQTL 221

Query: 358 GYAQAFSFKYSPRLGTP 374
                    + P   TP
Sbjct: 222 NPDMIGIGPFIPHDQTP 238


>gi|10639431|emb|CAC11433.1| conserved hypothetical protein [Thermoplasma acidophilum]
          Length = 554

 Score = 63.4 bits (153), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 54/346 (15%), Positives = 111/346 (32%), Gaps = 53/346 (15%)

Query: 74  EKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAE---GEEILRRSPIVNVVVGP 130
           +    + +  L      K ++ +EG    ++V G          +EI +    V+  V  
Sbjct: 117 DAWVRREWDSLME----KVNKAREGKKAKLIVGGPGVWEFTILRDEIDKY--KVDYYVQG 170

Query: 131 QTYYRLPELLERARFGK--------------RVVDTDYSVEDKFERLSIVDGGYNRKRGV 176
           +T   + EL  +                            ++KF    I    Y R   +
Sbjct: 171 ETDDVVAELFRQVAEDNIDKQMFFNGYMSYDENFHKVLKKDEKFLARGITQSAYPRLEDI 230

Query: 177 TAF--------LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLL 228
                      + +  GC   C FC V           L+ +VDE +  +  GV    L 
Sbjct: 231 PEIINPSMKGMVEVMRGCGVGCDFCEVTL--RPLRYMPLNMIVDEIKINVAGGVDNAWLH 288

Query: 229 GQNV-NAWRGKGLDGEKCTFSDLLYSLSEIKGLV--RLRYTTSHPRDMSDCLIKAHGDLD 285
              +     G   +  +   S+L  ++  + G+      +           +++    + 
Sbjct: 289 SDEIFGYKHGHFFEPNEEALSELFSTVMSVPGVKTSNPTHGRISIPAGYPEMMEKLSKIL 348

Query: 286 VLMPYLHLPVQSGSDRILKSMNRRHTAYEYR-----------QIIDR--IRSVRPDIAIS 332
              P   + +Q+G +   + + ++H   +              I+ +      R     +
Sbjct: 349 KAGPRNWIGIQTGLETGSEELAKKHMPNKTLPLRIGVDGSWQDIVWQGVFVETRNYWRSA 408

Query: 333 SDFIVGFPGETDDDFRATMDLVDKIGYA----QAFSFKYSPRLGTP 374
               VG  GET +D   T+ L++K+  +    + F F  +P +  P
Sbjct: 409 FTIQVGQEGETPEDLWETIALINKLSNSYVDGRPFEFTVTPLVNVP 454


>gi|182415968|ref|YP_001821034.1| hypothetical protein Oter_4160 [Opitutus terrae PB90-1]
 gi|177843182|gb|ACB77434.1| Radical SAM domain protein [Opitutus terrae PB90-1]
          Length = 687

 Score = 63.0 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 50/291 (17%), Positives = 97/291 (33%), Gaps = 63/291 (21%)

Query: 149 VVDTDYSVEDKFERLSIVDGGYNR--------KRGVTAFLTI------QEGCDKFCTFCV 194
           VV+  Y    + +  +  D  Y R        +  + A+  I        GC   C+FC 
Sbjct: 279 VVNPPYPTMTEEQMDASFDLPYTRLPHPKYRKRGPIPAYEMIKHSINLHRGCFGGCSFCT 338

Query: 195 VPYTRGIEI-SRSLSQV---VDEARKLIDNGVCEITLLGQNVNAWRGKG----------- 239
           +   +G  + SRS + +   V++ +++ D       L G + N +R KG           
Sbjct: 339 ISAHQGKFVASRSKASILREVEQVKQMPDYRGTITDLGGPSANMYRMKGKEQWICDECVR 398

Query: 240 -----------LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLD--- 285
                      LD +     ++  ++ E  G+     T+    D+    +   G      
Sbjct: 399 PSCIWPNVCRNLDTDHTPLLEIYQAVRETPGVKHAFVTSGIRYDL---FLHEKGASPQAQ 455

Query: 286 -------------VLMPYLHLPVQSGSDRILKSMNRRHTAYEY--RQIIDRI--RSVRPD 328
                         +   L +  +  SD +L+ M +      Y  ++  DR   ++ +P 
Sbjct: 456 ASHERYVEELAAHHVSGRLKVAPEHTSDHVLRVMRKPSFKLFYKFKEKFDRAVQKAGKPQ 515

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
             I   FI   PG   +D          +G+       ++P   T  + + 
Sbjct: 516 TQIVPYFISSHPGSRPEDMAELALKTKDLGFRLEQVQDFTPTPMTVATEIY 566


>gi|121534797|ref|ZP_01666617.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Thermosinus carboxydivorans Nor1]
 gi|121306592|gb|EAX47514.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Thermosinus carboxydivorans Nor1]
          Length = 380

 Score = 63.0 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 33/208 (15%), Positives = 66/208 (31%), Gaps = 10/208 (4%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C +C  P +           +    R++ + G      +   V    G        
Sbjct: 12  CRQKCLYCDFP-SHDNLAHLYQDYIDALCREIAEQGRRFAGWVVDTVYIGGGTPTVLPSE 70

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
               +  SL+    L      T      +  L          +  L   VQ+    +L  
Sbjct: 71  LLGRVFASLAAAFSLEPAVEITVEANPGTIDLPLLKALRAWGVNRLSFGVQTFVPHLLPL 130

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           + R HTA +  + ++  R+   D  I+ D + G P +   D   ++    ++G      +
Sbjct: 131 LGRVHTAEQGIEAVELARAAGFD-NINLDLMYGLPEQRQADVADSLSRATELGVPHLSVY 189

Query: 366 KYSPRLGTPGS--------NMLEQVDEN 385
                 GTP +         + ++ +E 
Sbjct: 190 GLKVEEGTPFAVSHAAGKLALPDETEEE 217


>gi|148254408|ref|YP_001238993.1| hypothetical protein BBta_2962 [Bradyrhizobium sp. BTAi1]
 gi|146406581|gb|ABQ35087.1| hypothetical protein BBta_2962 [Bradyrhizobium sp. BTAi1]
          Length = 528

 Score = 63.0 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 54/319 (16%), Positives = 106/319 (33%), Gaps = 28/319 (8%)

Query: 75  KAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYY 134
           +A       + R +     +     DL V + G    A  +      P  + +   +   
Sbjct: 77  EAVFVSGMHIQRQQMNDICQRAHAFDLPVALGGPSVSACPD----YYPSFDYLHVGELGD 132

Query: 135 RLPELLER-----ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKF 189
              EL+ER     +R  ++VV          E           K      +    GC   
Sbjct: 133 ATDELIERLARDPSRPEQQVVLRTKERVAMTEFPVPAYELAEVKNYFLGSIQYSSGCPYQ 192

Query: 190 CTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVC-EITLLGQNVNAWRGKGLDGEKCTF 247
           C FC +P   G     ++  Q++ E  KL + GV   +  +  N          G +   
Sbjct: 193 CEFCDIPGLYGRNPRIKTPQQIIAELDKLRECGVTGSVYFVDDNFI--------GNRKAA 244

Query: 248 SDLLYSLSEIKG----LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
            +LL  L E +     ++RL    +        +++   +   +   +   +++     L
Sbjct: 245 LELLPHLIEWQKRTGYVMRLACEATLNIAKRPEILEKMREAYFI--TIFCGIETPDPDAL 302

Query: 304 KSMNRRHTAYEYRQIIDRIRSVR-PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
            +M + H       I++ IR++    + + S  I+G   +T     A +  V++      
Sbjct: 303 TAMQKDHN--MMVPILEGIRTINSYGMEVVSGIIMGLDTDTPQTADALLQFVEESRIPLL 360

Query: 363 FSFKYSPRLGTPGSNMLEQ 381
                     TP  + LE+
Sbjct: 361 TINLLQALPKTPLWDRLER 379


>gi|302389318|ref|YP_003825139.1| Radical SAM domain protein [Thermosediminibacter oceani DSM 16646]
 gi|302199946|gb|ADL07516.1| Radical SAM domain protein [Thermosediminibacter oceani DSM 16646]
          Length = 618

 Score = 63.0 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 46/246 (18%), Positives = 93/246 (37%), Gaps = 29/246 (11%)

Query: 177 TAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAW 235
            A L I  GC + C FC           +S+ ++ + AR++I + G  EI+L   + + +
Sbjct: 260 RAVLEIFRGCTRGCRFCQAGMIYRPVREKSVDKLTNIAREMIKSTGYEEISLASLSTSDY 319

Query: 236 RGKGLDGEKCTFSDLLYSLSEI--KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHL 293
                         L+  L++   + +V L   +      +  L +   ++      L  
Sbjct: 320 ---------SALKQLVEILTDEFRQCMVGLSLPSLRIDSFTLDLARKIQEIKK--SGLTF 368

Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA---- 349
             ++G+ R+   +N+  T  +    +        +  +   F++G P ET +D       
Sbjct: 369 APEAGTQRLRDVINKGVTEEDLLNSVKGAFEAGWN-TVKLYFMIGLPSETYEDLEGIARL 427

Query: 350 TMDLVDKIGYAQ---------AFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLRE 400
              +VD     +           +  + P+  TP      Q+  +   ER   L+KKL+ 
Sbjct: 428 AYRVVDAYREVRGNTKGLKVTVSTSTFVPKPFTP-FQWEAQIPLDEIKERQRFLKKKLKG 486

Query: 401 QQVSFN 406
             +S+N
Sbjct: 487 PNISYN 492


>gi|206970131|ref|ZP_03231084.1| lipoyl synthase [Bacillus cereus AH1134]
 gi|206734708|gb|EDZ51877.1| lipoyl synthase [Bacillus cereus AH1134]
          Length = 298

 Score = 63.0 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 38/214 (17%), Positives = 76/214 (35%), Gaps = 13/214 (6%)

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           ++V ++ +  +I +    RK     F+ +   C + C FC V      E+   L +    
Sbjct: 37  HTVCEEAKCPNIHECWAVRK--TATFMILGAVCTRACRFCAVKTGLPTEL--DLQEPERV 92

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
           A  ++  G+  + +        R    DG    F++ + ++        +    S    +
Sbjct: 93  ADSVVQMGLKHVVITAV----ARDDLKDGGAAVFAETVRAVRRKNPFTSIEVLPSDMGGV 148

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
            + L         ++ +    V+  SD     +  R       + + R + + PDI   S
Sbjct: 149 EENLKMLMDAKPDILNHNIETVRRLSD----RVRARAKYERSLEFLRRAKEMHPDIPTKS 204

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
             +VG  GET +D    MD +           +Y
Sbjct: 205 SIMVGL-GETREDLIEAMDDLRANNVDILTLGQY 237


>gi|120597857|ref|YP_962431.1| lipoyl synthase [Shewanella sp. W3-18-1]
 gi|146293970|ref|YP_001184394.1| lipoyl synthase [Shewanella putrefaciens CN-32]
 gi|166230440|sp|A4Y9G2|LIPA_SHEPC RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|166230442|sp|A1RGT2|LIPA_SHESW RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|120557950|gb|ABM23877.1| lipoic acid synthetase [Shewanella sp. W3-18-1]
 gi|145565660|gb|ABP76595.1| lipoic acid synthetase [Shewanella putrefaciens CN-32]
 gi|319427346|gb|ADV55420.1| lipoic acid synthetase [Shewanella putrefaciens 200]
          Length = 321

 Score = 63.0 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 26/184 (14%), Positives = 59/184 (32%), Gaps = 14/184 (7%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V    G  +     + V  A+ + D  +  + +   +    R    DG   
Sbjct: 94  CTRRCPFCDV--AHGRPLKPDAEEPVKLAQTIRDMKLKYVVITSVD----RDDLRDGGAQ 147

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLD--VLMPYLHLPVQSGSDRIL 303
            F+D +  + ++   +++       R   D  +         V    L            
Sbjct: 148 HFADCIREIRKLNPAIKIEILVPDFRGRIDAALDILATEPPDVFNHNLETAPMHY----- 202

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           +             ++ R +   P++   S  ++G  GET+++    +  + +       
Sbjct: 203 RKARPGANYQWSLDLLKRFKERHPNVPTKSGLMMGL-GETNEEIAQVLRDLREHKVEMLT 261

Query: 364 SFKY 367
             +Y
Sbjct: 262 LGQY 265


>gi|289423266|ref|ZP_06425077.1| radical SAM domain protein [Peptostreptococcus anaerobius 653-L]
 gi|289156366|gb|EFD05020.1| radical SAM domain protein [Peptostreptococcus anaerobius 653-L]
          Length = 350

 Score = 63.0 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 29/228 (12%), Positives = 77/228 (33%), Gaps = 18/228 (7%)

Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL-- 207
           +D +      +      D  + RK  +   +     C + C++C +           L  
Sbjct: 29  IDEESIDYLFYMAAKTRDRHHGRKVYLRGLIEFTNYCKRECSYCGINAYNTKAKRYRLTK 88

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
            +++       + G     L G       G+ +  +    +D++ S+ ++     +  + 
Sbjct: 89  EEILATCLHGKELGFNTFVLQG-------GEDMYYDDEKMADIIRSIKDLAPDSAITISI 141

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
                 S  L++  G    L+ +     ++          + H+   ++     ++ ++ 
Sbjct: 142 GERSKDSYRLLREAGADRYLLRHETANEET--------YKKLHSKSYFKDRHQCLKDLKD 193

Query: 328 -DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
               + S F+VG P  T+ D+   +  + ++  A      +     TP
Sbjct: 194 LGFQVGSGFMVGLPDYTNSDYVKDLRFLKELEPAMVGMGPFIAHEDTP 241


>gi|222053888|ref|YP_002536250.1| radical SAM protein [Geobacter sp. FRC-32]
 gi|221563177|gb|ACM19149.1| Radical SAM domain protein [Geobacter sp. FRC-32]
          Length = 555

 Score = 63.0 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 81/230 (35%), Gaps = 33/230 (14%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
           + +  GC + C FC   +       R++  V++E RK +     +I L+G  V+ ++G G
Sbjct: 250 VEVARGCPRGCRFCAAGFIYLPYRQRNMESVMEEVRKGLQKK-KKIGLVGAAVSDFKGVG 308

Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
                    +L   + +  G V +        D  + L+ +  +       + L  + GS
Sbjct: 309 ---------ELSRFIVQQGGKVSVASLRIDCLD--EQLVDSLKESGH--KTVALAPEGGS 355

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
            R+   + +     +     D +      + +   FI+G P ET  D    + LV K+  
Sbjct: 356 QRLRDLIKKNIDEEQILTACDLLIGK-DLLNLKLYFIIGLPTETMVDLDEMIALVTKVR- 413

Query: 360 AQA---------------FSFKYSPRLGTP--GSNMLEQVDENVKAERLL 392
            +                    + P+  TP     M +      KA  L 
Sbjct: 414 DRVIDAARKNKRLGEVLLSVNPFIPKPFTPFQWCGMEDLKSLEKKARYLQ 463


>gi|118480056|ref|YP_897207.1| lipoyl synthase [Bacillus thuringiensis str. Al Hakam]
 gi|118419281|gb|ABK87700.1| lipoic acid synthetase [Bacillus thuringiensis str. Al Hakam]
          Length = 301

 Score = 63.0 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 38/214 (17%), Positives = 79/214 (36%), Gaps = 13/214 (6%)

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           ++V ++ +  +I +    RK     F+ +   C + C FC V      E+   L +    
Sbjct: 40  HTVCEEAKCPNIHECWAVRK--TATFMILGAVCTRACRFCAVKTGLPTEL--DLQEPERV 95

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
           A  ++  G+  + +        R    DG    F++ + ++        +    S    +
Sbjct: 96  ADSVVQMGLKHVVITAV----ARDDLKDGGAAVFAETVRAVRRKNPFTSIEVLPSDMGGV 151

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
            + L         ++ +    V+  SDR+      ++      + + R + ++PDI   S
Sbjct: 152 EENLKMLMDAKPDILNHNIETVRRLSDRV--RARAKYDRS--LEFLRRAKEMQPDIPTKS 207

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
             +VG  GET +D    MD +           +Y
Sbjct: 208 SIMVGL-GETREDLIEAMDDLRANNVDILTLGQY 240


>gi|21241439|ref|NP_641021.1| lipoyl synthase [Xanthomonas axonopodis pv. citri str. 306]
 gi|23821828|sp|Q8PPL8|LIPA_XANAC RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|21106777|gb|AAM35557.1| lipoic acid synthetase [Xanthomonas axonopodis pv. citri str. 306]
          Length = 337

 Score = 63.0 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 46/236 (19%), Positives = 77/236 (32%), Gaps = 24/236 (10%)

Query: 161 ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS--QVVDEARKLI 218
           E  S  +       G   F+ + E C + C+FC V + R           +    A  + 
Sbjct: 82  EEASCPNIHECFSHGTATFMILGEVCTRRCSFCDVAHGRPK----PPDASEPASLAATVA 137

Query: 219 DNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD---MSD 275
           D G+  + +   +    R    DG    F D + ++       R+   T   R    M  
Sbjct: 138 DMGLKYVVVTSVD----RDDLRDGGAQHFVDCISAIRTSSPNTRIEILTPDFRGKGRMDR 193

Query: 276 CL-IKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSD 334
            L I A    DV    +        +     +           ++ R ++  P IA  S 
Sbjct: 194 ALEILALSPPDVFNHNIETVPDLYPN-----VRPGADYQWSLTLLQRFKAQHPSIATKSG 248

Query: 335 FIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN--MLEQVDENVKA 388
            ++G  GET +  +AT+  +           +Y     TP  +  M     E  KA
Sbjct: 249 IMLGL-GETMEQVQATLRDLRAHDVDMITIGQY--LQPTPHHHPVMRYWTPEEYKA 301


>gi|262373897|ref|ZP_06067174.1| Fe-S oxidoreductase [Acinetobacter junii SH205]
 gi|262310908|gb|EEY91995.1| Fe-S oxidoreductase [Acinetobacter junii SH205]
          Length = 794

 Score = 63.0 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 48/264 (18%), Positives = 85/264 (32%), Gaps = 35/264 (13%)

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRG---VTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRS 206
           + DY  +  + RL     G  R      +   + I  GC   CTFC +    G  I +RS
Sbjct: 386 EMDYVFDLPYARLPHPAYGNARFPAFDMIKFSVNIMRGCFGGCTFCSITEHEGRIIQNRS 445

Query: 207 LSQVVDEARKLIDNGVCEITLLGQ------NVNAWRGKGLDGEK---------------- 244
              ++ E  K+ D       ++        N+        + EK                
Sbjct: 446 EESILREIEKIRDTAPQFTGIISDLGGPTANMYRLHCNDPEIEKNCRKPSCVYPGVCQNL 505

Query: 245 ----CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL--DVLMPYLHLPVQSG 298
                    L     EIKG+ ++   +    D++    +   +L    +  YL +  +  
Sbjct: 506 HTDHAPLVQLYRKAREIKGVKKILIGSGLRYDLAVLNPEYVKELVQHHVGGYLKIAPEHT 565

Query: 299 SDRILKSMNRR--HTAYEYRQIIDRI-RSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
               L  M +    T   ++Q+ +R  +    +  +   FI   PG TD D       + 
Sbjct: 566 EHGPLSKMMKPGIGTYDRFKQMFERFSKEAGKEQYLIPYFIAAHPGTTDYDMMNLAIWLK 625

Query: 356 KIGYAQAFSFKYSPRLGTPGSNML 379
           K G+       + P      + M 
Sbjct: 626 KNGFRADQVQTFYPSPMATATTMY 649


>gi|91202999|emb|CAJ72638.1| conserved hypothetical iron sulfur protein [Candidatus Kuenenia
           stuttgartiensis]
          Length = 623

 Score = 63.0 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 48/312 (15%), Positives = 116/312 (37%), Gaps = 40/312 (12%)

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           + D + +       +  V   ++R       + I  GC + C FC    ++     R++ 
Sbjct: 240 IEDLNAAYHPTKPVIPFVKIIHDRIS-----IEIMRGCTQGCRFCQAGMSKRPTRPRTVE 294

Query: 209 QVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI--KGLVRLRY 265
            ++  A +   N G  EI+L+  +V+ +              L+  ++ +     V + +
Sbjct: 295 NILRLAEESYANTGYNEISLMSLSVSDY---------PHLEQLMGKMNHVFAPRHVNIAF 345

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
            +    +    L      +      L + +++    + + +N+  T  ++ + I+     
Sbjct: 346 PSLRVNEQLALLPSMLNTVRK--SGLTIALEAAKPSLRRVINKNITNEDFFRGIEEAFRQ 403

Query: 326 RPDIAISSDFIVGFPGETDDDFRA----TMDLVDKIGYAQAFSFKY--SPRLGTPGSNML 379
             + A+   F++G P ETDDD  A      D+ D +   +    +   S     P ++  
Sbjct: 404 GWN-AVKLYFMIGLPTETDDDIEAIAALAYDVSDVMKKVRGHYGQVNISIAPFIPKAHTP 462

Query: 380 EQVDENVKAERLLCLQKKLRE------QQVSFNDACVGQIIEVLIEKHGKEKGKLVG--- 430
            Q    V  +R+  ++++L +       ++ F+ A       +L E       + +G   
Sbjct: 463 YQWQPMVSMDRIKEIRERLYQRIKRKNIRIKFHKA----ERSIL-EGIFARGDRRLGKVI 517

Query: 431 RSPWLQSVVLNS 442
            + W+     ++
Sbjct: 518 YTAWMHGCKFDA 529


>gi|188586741|ref|YP_001918286.1| Radical SAM domain protein [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179351428|gb|ACB85698.1| Radical SAM domain protein [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 620

 Score = 63.0 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 52/292 (17%), Positives = 93/292 (31%), Gaps = 54/292 (18%)

Query: 139 LLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKR---------GVTAFLTI------Q 183
           L+E  R    VV            L  +      K          GV A   I       
Sbjct: 247 LIEPYRHSNYVVQNPPPEPHTTRELDAIYLMPFTKNYHPIYEQMGGVPAIKEIKHSLVSS 306

Query: 184 EGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLID----------------------- 219
            GC   C+FC + + +G  + SRS   +++EA++++                        
Sbjct: 307 RGCFGGCSFCALHFHQGRIVQSRSTESILEEAQEMVQDPEFKGYIHDVGGPTANFRQKAC 366

Query: 220 -NGVCEITLLGQNVNAWR-GKGLDGEKCTFSDLLYSLSEIKGLVR------LRYTTSHPR 271
              +       +N  A +    L+     +  LL  L  ++G+ +      +R+      
Sbjct: 367 QKQLKHGVCQDKNCLAPKPCSNLEVNHQDYLKLLRKLRNMEGVKKVFIRSGIRFDYLLYD 426

Query: 272 DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA- 330
           D      +       +   L +  +  S+R+LK MN+      Y +  ++  ++      
Sbjct: 427 DDDSFFEELCRHH--VSGQLKVAPEHVSNRVLKKMNKPPHK-VYEKFKNKYHAINEKFGM 483

Query: 331 ---ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
              +   FI   PG    D     + V  IGY       + P  GT  + M 
Sbjct: 484 EQYLVPYFISSHPGSDLHDAIKLAEYVRDIGYNPQQVQDFYPTPGTLATCMY 535


>gi|160903203|ref|YP_001568784.1| radical SAM domain-containing protein [Petrotoga mobilis SJ95]
 gi|160360847|gb|ABX32461.1| Radical SAM domain protein [Petrotoga mobilis SJ95]
          Length = 448

 Score = 63.0 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 37/231 (16%), Positives = 79/231 (34%), Gaps = 19/231 (8%)

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTI--QEGCDKFCTFCVVPYTRGIEISR 205
            V++ D    D F     +D  Y+       ++ +    GC   CT+CV P        R
Sbjct: 180 EVLNEDTIKLDNFNWFEEIDLTYDFYASYLTYVVLVSSVGCPFHCTYCVTPKMW-KFQYR 238

Query: 206 SLSQVVDEARKLIDNG--VCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           S+ ++++    ++     V +I                  +    +LL  LS+      L
Sbjct: 239 SIDKIINNIEYVLKKRPYVKDIVF---------FDDAFLLRKDIKELLKYLSKFDVRYHL 289

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
                  R   +  +            + L  +S    I K    + T  +  + +  ++
Sbjct: 290 PNGIHARRVDDEIALLLKKAN---FKTIKLGYESYDFNIQKGTGFKVTNNDLVKAVTCLK 346

Query: 324 SVRPDIA-ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
           +   D+  + +  +V  P +  +D    +D    +G  +    +++P  GT
Sbjct: 347 NAGFDMNDVYAYVLVNLPSQNKNDVIQAVDFCHSLGI-KVNLNEFTPIPGT 396


>gi|221069430|ref|ZP_03545535.1| lipoic acid synthetase [Comamonas testosteroni KF-1]
 gi|264676462|ref|YP_003276368.1| lipoic acid synthetase [Comamonas testosteroni CNB-2]
 gi|299531216|ref|ZP_07044627.1| lipoyl synthase [Comamonas testosteroni S44]
 gi|220714453|gb|EED69821.1| lipoic acid synthetase [Comamonas testosteroni KF-1]
 gi|262206974|gb|ACY31072.1| lipoic acid synthetase [Comamonas testosteroni CNB-2]
 gi|298720799|gb|EFI61745.1| lipoyl synthase [Comamonas testosteroni S44]
          Length = 326

 Score = 63.0 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 76/208 (36%), Gaps = 12/208 (5%)

Query: 161 ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN 220
           E  S  + G    +G   F+ + + C + C FC V + R   +   +++ ++ AR +   
Sbjct: 75  EEASCPNIGECFGKGTATFMIMGDKCTRRCPFCDVGHGRPDPL--DVNEPLNLARTIAAL 132

Query: 221 GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKA 280
            +  + +   +    R    DG    F + + ++ E+    ++       R   D  ++ 
Sbjct: 133 RLKYVVITSVD----RDDLRDGGSGHFVECIKNIRELSPETQIEILVPDFRGRDDRALEI 188

Query: 281 HGDLDV-LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGF 339
                  +M +        + R+ K             ++ + + + PD+   S  +VG 
Sbjct: 189 LKSAPPDVMNHNL----ETAPRLYKEARPGSDYQFSLNLLKKFKELHPDVPTKSGIMVGL 244

Query: 340 PGETDDDFRATMDLVDKIGYAQAFSFKY 367
            GETD++    M  +           +Y
Sbjct: 245 -GETDEEILQVMRDMRAHNIDMLTIGQY 271


>gi|16082507|ref|NP_393768.1| Fe-S oxidoreductase [Thermoplasma acidophilum DSM 1728]
          Length = 558

 Score = 63.0 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 54/346 (15%), Positives = 111/346 (32%), Gaps = 53/346 (15%)

Query: 74  EKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAE---GEEILRRSPIVNVVVGP 130
           +    + +  L      K ++ +EG    ++V G          +EI +    V+  V  
Sbjct: 121 DAWVRREWDSLME----KVNKAREGKKAKLIVGGPGVWEFTILRDEIDKY--KVDYYVQG 174

Query: 131 QTYYRLPELLERARFGK--------------RVVDTDYSVEDKFERLSIVDGGYNRKRGV 176
           +T   + EL  +                            ++KF    I    Y R   +
Sbjct: 175 ETDDVVAELFRQVAEDNIDKQMFFNGYMSYDENFHKVLKKDEKFLARGITQSAYPRLEDI 234

Query: 177 TAF--------LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLL 228
                      + +  GC   C FC V           L+ +VDE +  +  GV    L 
Sbjct: 235 PEIINPSMKGMVEVMRGCGVGCDFCEVTL--RPLRYMPLNMIVDEIKINVAGGVDNAWLH 292

Query: 229 GQNV-NAWRGKGLDGEKCTFSDLLYSLSEIKGLV--RLRYTTSHPRDMSDCLIKAHGDLD 285
              +     G   +  +   S+L  ++  + G+      +           +++    + 
Sbjct: 293 SDEIFGYKHGHFFEPNEEALSELFSTVMSVPGVKTSNPTHGRISIPAGYPEMMEKLSKIL 352

Query: 286 VLMPYLHLPVQSGSDRILKSMNRRHTAYEYR-----------QIIDR--IRSVRPDIAIS 332
              P   + +Q+G +   + + ++H   +              I+ +      R     +
Sbjct: 353 KAGPRNWIGIQTGLETGSEELAKKHMPNKTLPLRIGVDGSWQDIVWQGVFVETRNYWRSA 412

Query: 333 SDFIVGFPGETDDDFRATMDLVDKIGYA----QAFSFKYSPRLGTP 374
               VG  GET +D   T+ L++K+  +    + F F  +P +  P
Sbjct: 413 FTIQVGQEGETPEDLWETIALINKLSNSYVDGRPFEFTVTPLVNVP 458


>gi|121603159|ref|YP_980488.1| lipoyl synthase [Polaromonas naphthalenivorans CJ2]
 gi|171769283|sp|A1VIT9|LIPA_POLNA RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|120592128|gb|ABM35567.1| lipoic acid synthetase [Polaromonas naphthalenivorans CJ2]
          Length = 332

 Score = 63.0 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 78/221 (35%), Gaps = 12/221 (5%)

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
           + +  +  +    E  S  + G    +G   F+ + + C + C FC V + R   +    
Sbjct: 62  KQILRENKLNTVCEEASCPNIGECFGKGTATFMIMGDKCTRRCPFCDVGHGRPDPL--DA 119

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
            + ++ AR +    +  + +   +    R    DG    F + +  + E+     +    
Sbjct: 120 DEPLNLARTIAALKLKYVVITSVD----RDDLRDGGSGHFVECIQRIRELSPGTTIEVLV 175

Query: 268 SHPRDMSDCLIKAHGDLDV-LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
              R   D  ++        +M +        + R+ K             ++ + +++ 
Sbjct: 176 PDFRGRDDRALEILKTSPPDVMNHNL----ETAPRLYKEARPGSDYQFSLNLLKKFKALH 231

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           PD+   S  +VG  GETD++    M  +   G       +Y
Sbjct: 232 PDVPTKSGIMVGL-GETDEEILQVMQDMRDHGINMLTIGQY 271


>gi|83309890|ref|YP_420154.1| Fe-S oxidoreductase [Magnetospirillum magneticum AMB-1]
 gi|82944731|dbj|BAE49595.1| Fe-S oxidoreductase [Magnetospirillum magneticum AMB-1]
          Length = 498

 Score = 63.0 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 38/212 (17%), Positives = 75/212 (35%), Gaps = 16/212 (7%)

Query: 174 RGVTAFLTIQEGCDKFCTFCVV--PYTRGIEISRSLSQVVDEARKLI-DNGVCEITLLGQ 230
           R   A L    GC   C+FC +  P+      + S   V+ +  +++   GV  I +  +
Sbjct: 214 RDSYASLQTSLGCPFKCSFCCINAPFGVNKIRTWSPDNVIAQIDEMVLKYGVRNIKIPDE 273

Query: 231 NVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY 290
                              +   L E    + L           D ++       +   +
Sbjct: 274 --------MFVLNPKHVLGICDKLIERGYGLNLWAYARVDTLNDDAMLDKLKAAGI--NW 323

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP-DIAISSDFIVGFPGETDDDFRA 349
           L L ++SGS  +   + +    +    I   +R VR   I + +++I G P +T +  + 
Sbjct: 324 LGLGIESGSKYVRDGVTKG--RFGNLDISAVVRRVRDKGIYVGANYIFGLPDDTLESMQE 381

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           T+DL   +    A  +      G+    M ++
Sbjct: 382 TLDLAISLNTEWANFYCAMAYPGSHLYEMAKE 413


>gi|330828590|ref|YP_004391542.1| lipoic acid synthetase [Aeromonas veronii B565]
 gi|328803726|gb|AEB48925.1| Lipoic acid synthetase [Aeromonas veronii B565]
          Length = 315

 Score = 63.0 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 28/182 (15%), Positives = 65/182 (35%), Gaps = 10/182 (5%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V    G  ++    +    A  + +  +  + +   +    R    DG   
Sbjct: 88  CTRRCPFCDV--AHGRPLALDPEEPKKLALTIKEMNLKYVVITSVD----RDDLRDGGAQ 141

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
            F+D +  + E     R+   T   R   +  ++   +     P +       + R+ + 
Sbjct: 142 HFADCIREIREHSPQTRIEILTPDFRGRMEQALEVFRETP---PDVFNHNLETAPRMYRV 198

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
                      +++ RI+ + P++   S  ++G  GET+++    +  +   G       
Sbjct: 199 ARPGADYKWSLELLRRIKEMHPNVPTKSGLMMGL-GETNEEIVEVLKDLRAHGVNMLTLG 257

Query: 366 KY 367
           +Y
Sbjct: 258 QY 259


>gi|126178349|ref|YP_001046314.1| radical SAM domain-containing protein [Methanoculleus marisnigri
           JR1]
 gi|125861143|gb|ABN56332.1| Radical SAM domain protein [Methanoculleus marisnigri JR1]
          Length = 550

 Score = 63.0 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 39/227 (17%), Positives = 78/227 (34%), Gaps = 31/227 (13%)

Query: 180 LTIQEGCDK----FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQ-NVNA 234
           L    GC +     C+FC  P+  G+   RS+  + +E   L   G     L  Q ++ A
Sbjct: 183 LETATGCSRATVGGCSFCTEPF-YGLPRYRSIEGIAEEVAALHAAGARHFRLGRQPDLLA 241

Query: 235 WRGKGLDGEKCTFSDLLYSL-----SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLM- 288
           ++  G         ++L  L          L  L     +P  ++     A   L+ ++ 
Sbjct: 242 YKSSGGGEFPVPRPEVLKELFSAVRESAPDLKTLHIDNINPGTIARHEDAARAALEAIVA 301

Query: 289 -----PYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV-------RPDIAISSDFI 336
                      +++    ++ + N +    +  + I+ +  V        P++    +FI
Sbjct: 302 GHTPGDTAAFGMETADPAVVTANNLKAMPDDVFRAIEVVNDVGAKRTGGVPELLPGLNFI 361

Query: 337 VGFPGETDDDFRATMDLVDKIGYA------QAFSFKYSPRLGTPGSN 377
           +G  GET   F A    + ++         +    +  P  GT    
Sbjct: 362 IGLAGETPATFDANEAFLQRV-LDAGLLVRRVNIRQVMPFEGTKAYE 407


>gi|300712193|ref|YP_003738007.1| Radical SAM domain protein [Halalkalicoccus jeotgali B3]
 gi|299125876|gb|ADJ16215.1| Radical SAM domain protein [Halalkalicoccus jeotgali B3]
          Length = 582

 Score = 63.0 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 74/476 (15%), Positives = 145/476 (30%), Gaps = 80/476 (16%)

Query: 58  SMDDADLIV-LNTCHI---------REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAG 107
            +++ADL+V +    +          E    K  +++ R  +L    +K G    V    
Sbjct: 66  DIEEADLMVYIGGMTVPGNYVGGTPAEPDEVKKLAWVARGTSLMGGPVKFG----VGEEN 121

Query: 108 CVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR--FGKRVVDTDYSVEDKFERLSI 165
             AQ    + L      + V          +L+      FG R+ D         +   +
Sbjct: 122 AGAQDMERKDLDY----DFVAKGDVEAAAHDLVASGLEGFGDRMRDNREIDRWSRKGAFV 177

Query: 166 VDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEI 225
           ++   N    +   +    GC   C+FC  P   G    RS   VV E   L + G    
Sbjct: 178 IEQHPNHPDYLICEMETSRGCAYRCSFCTEP-LYGNPTFRSAESVVSEVSNLSERGARHF 236

Query: 226 TLLGQ-NVNAWRGKGLDGEKCTFSDLLYSLSE-IKGLVRLRYTTSHPR------DMSDCL 277
            L  Q ++ A+ G G         +L   + E +  L  L     +P       + S   
Sbjct: 237 RLGRQADILAFGGDGEAPNPDALRELYGGIREAVPDLGTLHLDNMNPVTIVEYPEKSREG 296

Query: 278 IKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS------------- 324
           I+   + +         ++S    + +  N   +A E  + +  +               
Sbjct: 297 IRIIAEHNTPGDTAAFGLESADPVVQEENNLLVSAEECLEAVRVVNEEGGWRPGEGSEAR 356

Query: 325 -------------------------VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
                                      P +    + + G  GE  + +      +  + Y
Sbjct: 357 RASDGRAALPRDRVLGPSHGEEAGDRLPKLLPGINLVHGLMGERPETYEHNKRFLKDV-Y 415

Query: 360 A------QAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACV--- 410
                  +    +     GT  +     +    K +     ++++RE+  +     V   
Sbjct: 416 DEGLMVRRINIRQVMAFAGTEMAETGADIAREHKRQ-FKPYKREVREEIDNPMLKRVAPA 474

Query: 411 GQIIEVLIEKHGKEKGKLVGR-SPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYG 465
           G ++E  +     E G+  GR       ++     H +G  + V I D    ++ G
Sbjct: 475 GTVLED-VHMEYHENGRTFGRQLGTYSLLIGVPGEHELGSAMDVAIVDHGYRSVTG 529


>gi|294778393|ref|ZP_06743816.1| radical SAM domain protein [Bacteroides vulgatus PC510]
 gi|294447655|gb|EFG16232.1| radical SAM domain protein [Bacteroides vulgatus PC510]
          Length = 642

 Score = 63.0 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 49/299 (16%), Positives = 96/299 (32%), Gaps = 66/299 (22%)

Query: 139 LLERARFGKRVVDTDYSVEDKFERLSIVDGGYNR-------KRGVTAFLTI------QEG 185
           +L+       VV+  Y    + E     D  Y R        + + AF  I        G
Sbjct: 287 ILQDTGNETVVVNPPYPPMSQGELDHSFDLPYTRMPHPKYKGKRIPAFDMIKFSVNLHRG 346

Query: 186 CDKFCTFCVVPYTRGIE-ISRSLSQVVDEAR---KLIDNGVCEITLLGQNVNAWRGKGLD 241
           C   C FC +   +G   +SRS   ++ E R   ++ D       L G + N +  +G D
Sbjct: 347 CFGGCAFCTISAHQGKFIVSRSKESILREVRAITEMPDFKGYLSDLGGPSANMYAMRGKD 406

Query: 242 GEKCT----------------------FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIK 279
            + C                         D+ +S+  + G+ +          +   L++
Sbjct: 407 EKICRRCKRPSCIHPKVCPNLNTDHRPLLDIYHSVDALPGIKKSFIG----SGVRYDLLQ 462

Query: 280 AHGDLDVLMPYL----------------HLPVQSGSDRILKSMNRR-----HTAYEYRQI 318
                  +                     +  +  SD++L+ M +      +   +    
Sbjct: 463 YQSKDPAVNRSTAEYTRELIAHHVSGRLKVAPEHTSDQVLQIMRKPSFSQFYDFKKTFDK 522

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
           I++  ++R  I     FI   PG T++D      +  K+ +       ++P   T  + 
Sbjct: 523 INKELNMRQQIIPY--FISSHPGCTEEDMAELAVITKKLDFHLEQVQDFTPTPMTVATE 579


>gi|322418155|ref|YP_004197378.1| cobalamin B12-binding domain-containing protein [Geobacter sp. M18]
 gi|320124542|gb|ADW12102.1| cobalamin B12-binding domain protein [Geobacter sp. M18]
          Length = 444

 Score = 63.0 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 50/280 (17%), Positives = 92/280 (32%), Gaps = 25/280 (8%)

Query: 99  GDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVED 158
             + VV  G  A A  EE        + VV  +     P++L   + G  +       + 
Sbjct: 80  RGIKVVFGGMHASAMPEEAKGHG---DAVVIGEAESVWPQVLSDFKAG-TLKPFYKGEQL 135

Query: 159 KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV-PYTRGIEISRSLSQVVDEA--- 214
           +   +     G  +       +    GC   CTFC V P+       R +  VV +    
Sbjct: 136 ELTGMPTPLYGMLKNNHQFRIVNTSRGCPFNCTFCSVKPFFGAKIRFRPIEDVVRDVAAI 195

Query: 215 -RKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
             K+ + G   I    +   A                  SL  +      R         
Sbjct: 196 PEKMYEIGDENIWWSSETKRAIELFTALKGSPKKYMAFGSLGPVLAPEGSR--------- 246

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
              ++ A  +  +L  ++     + S++ LK+          R+   R       I +S 
Sbjct: 247 ---MLNAARESGLLSVWVGW--DAISEKSLKAYKANGKIGVDRERAVRTLK-DHGIDVSL 300

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
            +++G   +T DDF+  +++ D++G +        P  GT
Sbjct: 301 FYMLGSREDTFDDFKRAIEVADRLGVS-MHPSLVVPYPGT 339


>gi|325510642|gb|ADZ22278.1| Ucharacterized Fe-S oxidoreductase [Clostridium acetobutylicum EA
           2018]
          Length = 321

 Score = 63.0 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 39/207 (18%), Positives = 73/207 (35%), Gaps = 20/207 (9%)

Query: 181 TIQEGCDKFCTFCVVPYT------RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA 234
           TI  G    C FC    +      R   IS     + D  +    NG             
Sbjct: 50  TISRG---GCMFCSERGSGDFAGNRKFSISTQFEDIKDMMKNKWKNGKYIAYFQA----- 101

Query: 235 WRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGD-LDVLMPYLHL 293
                    K        ++S+  G+V L    + P  +S+ ++    +    +  ++ L
Sbjct: 102 -YTNTYAPIKVLREKYSEAISK-DGVVGLAI-ATRPDCLSEEVLDLIQEFSKRIYVWVEL 158

Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
            +Q+ +D++ K +NR +    +   + ++R  + D+ + +  I G PGE   D  +T+D 
Sbjct: 159 GLQTANDKVAKVINRGYDTIVFDDAVKKLRERKIDVVVHT--IFGLPGEKPKDMLSTIDY 216

Query: 354 VDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           V                 GTP   +  
Sbjct: 217 VAHKEVQGIKIHLLHLMRGTPLVELYN 243


>gi|313906556|ref|ZP_07839885.1| Radical SAM domain protein [Eubacterium cellulosolvens 6]
 gi|313468603|gb|EFR63976.1| Radical SAM domain protein [Eubacterium cellulosolvens 6]
          Length = 469

 Score = 63.0 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 52/358 (14%), Positives = 100/358 (27%), Gaps = 54/358 (15%)

Query: 41  SLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGD 100
           S  +  +           + DAD+I +        A                   ++   
Sbjct: 52  SESISGINEK-------DVLDADIIFIG--IFTFAAVRGYEL---------ADYYRKNSR 93

Query: 101 LLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYY--------------RLPELLERARFG 146
             VV+ G  A     E ++    V +  G  T                     LE     
Sbjct: 94  ATVVLGGLHASMNYTEAVQHCDYVLLGEGDDTILPLIRAVSEEKKPSGNGYAYLEDGELI 153

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTI--QEGCDKFCTFCV-VPYTRGIEI 203
              +    +  D      ++          T +  +    GC   C +C  V +      
Sbjct: 154 HTGMPEAPTDIDVIPDRDLIHNYRKMVGHSTIWPQVHASRGCPHNCDYCALVRHFGHCVR 213

Query: 204 SRSLSQVVDEARKLID-------NGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256
           +RS   VV + +  ID         +  + +   N  A R   +        ++L  + +
Sbjct: 214 TRSPENVVADIKYSIDYFNRRPFRLLKGLWITDDNFFADRDWAI--------EVLNKIID 265

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
                +      +     D ++            L L ++   D   K+ +++ T  E  
Sbjct: 266 SGIKYKFNIQARYEVGFDDEMLDLLKRAGFF--ELDLGIEFVDDDSFKTYHKKSTKTEIE 323

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
           + I  I+  R  +A+   FI+G   +     +   D V +               GTP
Sbjct: 324 EAIRNIQ--RHGMAVRGLFILGSDNQKKGCGKDLADFVIRNNIKGVLIQCMYFVPGTP 379


>gi|271963813|ref|YP_003338009.1| coproporphyrinogen dehydrogenase [Streptosporangium roseum DSM
           43021]
 gi|270506988|gb|ACZ85266.1| Coproporphyrinogen dehydrogenase [Streptosporangium roseum DSM
           43021]
          Length = 403

 Score = 63.0 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 49/247 (19%), Positives = 83/247 (33%), Gaps = 16/247 (6%)

Query: 172 RKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVC-EITLLGQ 230
           R  G    +     C   C +C        E+    +   D A   ID        L G 
Sbjct: 28  RPFGFYVHVPF---CVTRCGYCDFNTYTASEL-GPGASHKDYADTAIDEVRRARANLGGA 83

Query: 231 NVNAWRGKGLDGEKCTFS--DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKA--HGDLDV 286
           ++         G        DL+  L  I+    L        + +   +      +L  
Sbjct: 84  DLPVETVFFGGGTPTLLPAGDLVRILGAIEEEFGLAPGAEVTTEANPESVDPAYLSELRG 143

Query: 287 L-MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDD 345
                +   +QS  + +L+ + RRHT       +   R    D  ++ D I   PGE+DD
Sbjct: 144 GGFTRMSFGMQSAREHVLEVLERRHTPGRPAHAVREAREAGFD-HVNLDLIYSTPGESDD 202

Query: 346 DFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM-----LEQVDENVKAERLLCLQKKLRE 400
           D+RA++    + G     ++      GT  +       L   D++V A+R L     L E
Sbjct: 203 DWRASLAAAIEAGPDHVSAYSLIVEDGTRLAARIRRGELPMPDDDVAADRYLIADAMLAE 262

Query: 401 QQVSFND 407
               + +
Sbjct: 263 AGFEWYE 269


>gi|239626113|ref|ZP_04669144.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239520343|gb|EEQ60209.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 413

 Score = 63.0 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/196 (18%), Positives = 69/196 (35%), Gaps = 2/196 (1%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C +C     R    S   +      R++   G          +    G     E C
Sbjct: 18  CARKCLYCDFLSFRA-LASVHEAYTAQLIREIEAQGAFCREYQVTTIFIGGGTPSVMEPC 76

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
             +D++ +L     +      T      +    K H   +  +  L + +QS  +R L+ 
Sbjct: 77  LIADIMRALKYHFDVAEDAEITIEVNPGTLLYNKLHIYREAGINRLSIGLQSTDNRELRD 136

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           + R HT  E+ +     R +     I+ D +   PG+T + F+ T+  V  +      ++
Sbjct: 137 LGRIHTFEEFLKSFQCAR-MVGFSNINVDLMSSIPGQTLESFKNTLKKVAMLKPEHISAY 195

Query: 366 KYSPRLGTPGSNMLEQ 381
                 GTP  +   Q
Sbjct: 196 SLIIEEGTPFWDHYGQ 211


>gi|198276882|ref|ZP_03209413.1| hypothetical protein BACPLE_03087 [Bacteroides plebeius DSM 17135]
 gi|198270407|gb|EDY94677.1| hypothetical protein BACPLE_03087 [Bacteroides plebeius DSM 17135]
          Length = 377

 Score = 63.0 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 44/207 (21%), Positives = 81/207 (39%), Gaps = 17/207 (8%)

Query: 186 CDKFCTFCVV-PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR---GKGLD 241
           C + C +C     T   + S  +  +  E        + +  L G+ ++      G    
Sbjct: 11  CKRRCIYCDFFSTTENDKKSTYVQALSKELE------LRKAYLDGEIIDTIYFGGGTPSQ 64

Query: 242 GEKCTFSDLLYSLSEI--KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
            E   F  L  ++ +I            ++P D++   I     L      L + +Q+  
Sbjct: 65  LEGKDFIQLFETIYKIYTVNPEAEITIEANPDDLTPEYIAMLRTLP--FNRLSMGIQTFK 122

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
           +  L+ ++RRHTA + +Q     R       IS D + G PGET +D++  +    ++  
Sbjct: 123 EDTLRLLHRRHTAAQAQQAYQHCREAGFQ-NISIDLMYGLPGETLEDWQKDLQTALQMHP 181

Query: 360 AQAFSFKYSPRLGTPGSNMLE--QVDE 384
               ++      GTP  N+ E  QV+E
Sbjct: 182 EHISAYHLIYEEGTPLWNLKEAHQVEE 208


>gi|89896776|ref|YP_520263.1| hypothetical protein DSY4030 [Desulfitobacterium hafniense Y51]
 gi|89336224|dbj|BAE85819.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 334

 Score = 63.0 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/139 (21%), Positives = 61/139 (43%), Gaps = 4/139 (2%)

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLD-VLMPYLHLPVQSGSDRILK 304
              ++       +G+V L    + P  +   ++    +L+     ++ L +QS  DR ++
Sbjct: 119 RLQEVYEQALAEEGVVGLSI-ATRPDCLPAEVLDYLEELNQRTYLWVELGLQSIHDRTME 177

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
            + R HT  ++ Q +D++R    +I + +  I G PGET +D   +   + K+       
Sbjct: 178 WVGRGHTFEDFLQGLDKLRRR--NIRVCTHMIYGLPGETLEDMFGSAQTLAKLDVQGVKL 235

Query: 365 FKYSPRLGTPGSNMLEQVD 383
                  GTP +++ EQ  
Sbjct: 236 HLLHVLKGTPLADIYEQSP 254


>gi|219667392|ref|YP_002457827.1| hypothetical protein Dhaf_1335 [Desulfitobacterium hafniense DCB-2]
 gi|219537652|gb|ACL19391.1| conserved hypothetical protein [Desulfitobacterium hafniense DCB-2]
          Length = 328

 Score = 63.0 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/139 (21%), Positives = 61/139 (43%), Gaps = 4/139 (2%)

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLD-VLMPYLHLPVQSGSDRILK 304
              ++       +G+V L    + P  +   ++    +L+     ++ L +QS  DR ++
Sbjct: 113 RLQEVYEQALAEEGVVGLSI-ATRPDCLPAEVLDYLEELNQRTYLWVELGLQSIHDRTME 171

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
            + R HT  ++ Q +D++R    +I + +  I G PGET +D   +   + K+       
Sbjct: 172 WVGRGHTFEDFLQGLDKLRRR--NIRVCTHMIYGLPGETLEDMFGSAQTLAKLDVQGVKL 229

Query: 365 FKYSPRLGTPGSNMLEQVD 383
                  GTP +++ EQ  
Sbjct: 230 HLLHVLKGTPLADIYEQSP 248


>gi|90022974|ref|YP_528801.1| lipoyl synthase [Saccharophagus degradans 2-40]
 gi|89952574|gb|ABD82589.1| lipoic acid synthetase [Saccharophagus degradans 2-40]
          Length = 355

 Score = 63.0 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 38/249 (15%), Positives = 84/249 (33%), Gaps = 20/249 (8%)

Query: 127 VVGPQTYYRLPELLERARFGKRVVDTDYSVEDK------FERLSIVDGGYNRKRGVTAFL 180
           V+   +  R P+ +         VD    +  K       E  +  +       G   F+
Sbjct: 63  VIATDSMLRKPDWIRIRVKADPEVDRIKKLLRKNKLSTVCEEANCPNLSECFGGGTATFM 122

Query: 181 TIQEGCDKFCTFCVVPYTRGIEISRSLSQV--VDEARKLIDNGVCEITLLGQNVNAWRGK 238
            + + C + C FC V + +       L +      A  + D G+  + +   +    R  
Sbjct: 123 IMGDICTRRCPFCDVGHGKPN----PLDENEPKHLAEAIADMGLKYVVVTSVD----RDD 174

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
             DG    F+D +     +   +++   T   R   D  +    +     P +       
Sbjct: 175 LRDGGAQHFADCIRESRALSPNLQVEILTPDFRGRMDIALDILANEP---PDVFNHNLET 231

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
             R+ +            +++ + +++RP++   S  +VG  GET ++   T+  + +  
Sbjct: 232 VPRLYREARPGANYKWSLELLKKYKALRPEVLTKSGLMVGL-GETKEEIFETLKDMREHD 290

Query: 359 YAQAFSFKY 367
                  +Y
Sbjct: 291 IDMLTIGQY 299


>gi|150389508|ref|YP_001319557.1| radical SAM domain-containing protein [Alkaliphilus metalliredigens
           QYMF]
 gi|149949370|gb|ABR47898.1| Radical SAM domain protein [Alkaliphilus metalliredigens QYMF]
          Length = 587

 Score = 63.0 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 39/211 (18%), Positives = 78/211 (36%), Gaps = 12/211 (5%)

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G+ +V+         + +     G         +     GC   C +C+    +G    
Sbjct: 144 KGQILVNELGCEAYDMKDIPFPYEGEVLDENKIVYYEASRGCPFNCQYCLSSSFQG-VRF 202

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE-IKGLVRL 263
             + +V  E +  ID  V ++  + +  NA     L        +++  L E   G    
Sbjct: 203 LPIERVKKELKYFIDQEVKQVKFVDRTFNANIEYAL--------EIMKFLKEYHTGKTNF 254

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
            +  +    +SD ++     + V +    + VQS ++  L+++ R+    +   ++ RI 
Sbjct: 255 HFEVTADL-ISDEILDFLETVPVGLFQFEIGVQSTNEETLQAIQRKMDFQKLSYVVKRIA 313

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
             R +I    D I G P E    FR + + V
Sbjct: 314 RYR-NIHQHLDLIAGLPKENYFTFRKSFNDV 343


>gi|224825706|ref|ZP_03698810.1| Radical SAM domain protein [Lutiella nitroferrum 2002]
 gi|224601930|gb|EEG08109.1| Radical SAM  domain protein [Lutiella nitroferrum 2002]
          Length = 774

 Score = 63.0 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 45/283 (15%), Positives = 87/283 (30%), Gaps = 38/283 (13%)

Query: 161 ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLID 219
              S           +   + I  GC   CTFC +    G  I SRS   ++ E  ++ D
Sbjct: 381 PHPSYGKAHIPAWEMIKYSVNIMRGCFGGCTFCSITEHEGRIIQSRSEESILKELEEIRD 440

Query: 220 NG----VCEITLLGQNVNAWR----------------------GKGLDGEKCTFSDLLYS 253
                      L G   N +R                       + L  +      L   
Sbjct: 441 KTDGFTGHISDLGGPTANMYRLACKDKKIETSCRKLSCVYPDICENLGTDHSHLIQLYRK 500

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRRHT 311
              + G+ ++   +    D++    +   +L    +  YL +  +   +  L  M +   
Sbjct: 501 ARALPGIKKINIQSGLRYDLAVRSPEYIKELVTHHVGGYLKIAPEHTEEGPLSKMMKPGM 560

Query: 312 AYE--YRQIIDRI-RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK--IGYAQAFSFK 366
                ++++ +R  R    +  +   FI   PG +D+D       + K      Q  +F 
Sbjct: 561 GAYDKFKELFERFSRQAGKEQYLIPYFIAAHPGTSDEDMMNLALWLKKNNFRLDQVQTF- 619

Query: 367 YSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDAC 409
            +P      + M       +K  RL    +K+   +  +    
Sbjct: 620 -TPTPMAMATTMWHTRRNPLK--RLARSSEKVDVVRDGYRRKL 659


>gi|197303674|ref|ZP_03168711.1| hypothetical protein RUMLAC_02401 [Ruminococcus lactaris ATCC
           29176]
 gi|197297194|gb|EDY31757.1| hypothetical protein RUMLAC_02401 [Ruminococcus lactaris ATCC
           29176]
          Length = 481

 Score = 63.0 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/191 (17%), Positives = 67/191 (35%), Gaps = 21/191 (10%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEK 244
           C   C++C          S  + +  D+    +D  + E+  LG+     +   +  G  
Sbjct: 166 CPSICSYCSFS-------SSPVGEWKDKIDAYLDALIKELKALGRMAGERKPDTVYVGGG 218

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMS----------DCLIKAHGDLDVLMPYLHLP 294
              +     L  + G +R  +  S  ++ +             ++        +  + + 
Sbjct: 219 TPTTLEAGQLDRLLGTIRNCFDLSELKEFTVEAGRPDSITREKLEVIRRYP--VTRISVN 276

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
            Q+   + L  + R+HT  E  +I    R +  D  I+ D I G PGET  D + T+  +
Sbjct: 277 PQTMQQKTLDLVGRKHTVEEVERIFCMARKLGFD-NINMDLIAGLPGETRVDMQDTLRRI 335

Query: 355 DKIGYAQAFSF 365
             +        
Sbjct: 336 KALAPDSLTVH 346


>gi|189499489|ref|YP_001958959.1| Radical SAM domain-containing protein [Chlorobium phaeobacteroides
           BS1]
 gi|189494930|gb|ACE03478.1| Radical SAM domain protein [Chlorobium phaeobacteroides BS1]
          Length = 603

 Score = 63.0 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 68/364 (18%), Positives = 122/364 (33%), Gaps = 50/364 (13%)

Query: 36  MNVYDSLRMEDMFFSQG----YERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLK 91
            N  ++L + + +++ G    +ER+     A+++ +++       A      L  I    
Sbjct: 38  KNDVETLSIPENYYNAGIFTSFERLLKKQPAEIVGISSMT----GAFSNAVRLAEIARKH 93

Query: 92  NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA-------- 143
            +         VV+ G    A  EE+L+ S I  VV+G         +L           
Sbjct: 94  GAF--------VVMGGFHPTALPEEVLKLSCIDAVVIGEGEETFRDLVLHGPGREVKGLV 145

Query: 144 --RFGKRVVDTDYSVEDKFERLSIV-----DGGYNRKRGVTAFLTI--QEGCDKFCTFCV 194
               G  V      +    + LS          Y  K    +  TI    GC   C+FC 
Sbjct: 146 FRENGGIVYSAPREIIRDIDALSFPLRSLRPDRYEEKGTDYSIDTIHTSRGCPWVCSFCA 205

Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL 254
                     RS   VVDE  +L    + +           R K  D    T    +  +
Sbjct: 206 NDQVHKQWRGRSAESVVDEFAELHSTVIKK-----------RIKIWDANFLTSIGRVERI 254

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMP----YLHLPVQSGSDRILKSMNRRH 310
            ++     L          +  LI+    L+ L       + L ++S +   L+ +N+++
Sbjct: 255 CDMMIERGLTNFRITTETRAKDLIRGERILEKLSKIGLNKVGLGIESPNAGTLQLLNKKN 314

Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370
                   +    + R  I     FI+G   E+++D  A  +    +G  Q+     +P 
Sbjct: 315 DLDLVSTAVAL--AGRHGIGTEGYFIIGHNHESEEDTMAYPEFAKTLGLPQSVFMVMTPY 372

Query: 371 LGTP 374
            GT 
Sbjct: 373 PGTK 376


>gi|169334955|ref|ZP_02862148.1| hypothetical protein ANASTE_01361 [Anaerofustis stercorihominis DSM
           17244]
 gi|169257693|gb|EDS71659.1| hypothetical protein ANASTE_01361 [Anaerofustis stercorihominis DSM
           17244]
          Length = 594

 Score = 63.0 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 52/247 (21%), Positives = 86/247 (34%), Gaps = 24/247 (9%)

Query: 114 GEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRK 173
             E L ++  V  V  P       E +E++              +    L      Y   
Sbjct: 186 KNEFLIKASEVVGVYIPNLDEIKQEHIEKS---------IIPSMNNVYSLKKPIVPYTPP 236

Query: 174 RGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNV 232
                 L +  GC + C FC           +SL  ++++A +LI N G  EI+L   + 
Sbjct: 237 VHDRISLEVMRGCFRGCRFCQAGMIYRPVRQKSLPTLIEQADELIKNTGYEEISLTSLST 296

Query: 233 NAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS--HPRDMSDCLIKAHGDLDVLMPY 290
                           +L+  L +     R+  +       + S  L +  G L      
Sbjct: 297 TDHFHCM---------ELVKYLVDNYKDKRINVSLPSLRMDEFSLELSEEVGSLKK--NS 345

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
           L    ++GS R+   +N+  T  +    I R+        I   F++G P ETD+D +  
Sbjct: 346 LTFAPEAGSQRMRNVINKNLTEEDILGTIKRVFEA-GYSKIKLYFMIGLPYETDEDIKGI 404

Query: 351 MDLVDKI 357
            DL  KI
Sbjct: 405 ADLAQKI 411


>gi|291527556|emb|CBK93142.1| Coproporphyrinogen III oxidase and related Fe-S oxidoreductases
           [Eubacterium rectale M104/1]
          Length = 543

 Score = 63.0 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 43/201 (21%), Positives = 69/201 (34%), Gaps = 18/201 (8%)

Query: 174 RGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNV- 232
            G + ++ I   C   C +C          S  L    +     +D    EI    Q   
Sbjct: 218 NGYSLYIGIPF-CPSTCAYCSFT-------SYPLGVWKNRVDDYLDALEKEIDYTAQKFY 269

Query: 233 ----NAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR----YTTSHPRDMSDCLIKAHGDL 284
               N+    G      + + L   + +IK    L+    +T    R  S    K     
Sbjct: 270 HKKLNSIYIGGGTPTTLSPAQLDRLIRKIKCSFDLKDCLEFTVEAGRPDSITKEKLMALK 329

Query: 285 DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETD 344
              +  + +  Q+   + L  + R HT  +  Q     R +  D  I+ D I+G P ET 
Sbjct: 330 KNGISRISVNPQTMKQQTLDIIGRHHTVDDTIQSFKLARELGFD-NINMDLIMGLPEETL 388

Query: 345 DDFRATMDLVDKIGYAQAFSF 365
           DD R TM+LV ++        
Sbjct: 389 DDVRHTMELVKELAPDNVTIH 409


>gi|323307219|gb|EGA60502.1| Lip5p [Saccharomyces cerevisiae FostersO]
          Length = 414

 Score = 63.0 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 87/235 (37%), Gaps = 16/235 (6%)

Query: 167 DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEIT 226
            GG ++ +     + + + C + C FC V   R       +    + A  +   G+  + 
Sbjct: 162 WGGKDKSKATATIMLLGDTCTRGCRFCSVKTNRTPSKPDPME-PENTAEAIKRWGLGYVV 220

Query: 227 LLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV 286
           L   +    R   +DG     ++ +  + + K    L  T S        ++       +
Sbjct: 221 LTTVD----RDDLVDGGANHLAETVRKI-KQKAPNTLVETLSGDFRGDLKMVDIMAQCGL 275

Query: 287 -LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDD 345
            +  +    V+S +  +     RR T  +   +++R ++  P +   +  ++G  GETD+
Sbjct: 276 DVYAHNLETVESLTPHVRD---RRATYRQSLSVLERAKATVPSLITKTSIMLGL-GETDE 331

Query: 346 DFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLRE 400
               T+  +  I        +Y  R     +    +V E VK E+    +++  E
Sbjct: 332 QITQTLKDLRNIQCDVVTFGQYM-RP----TKRHMKVVEYVKPEKFDYWKERALE 381


>gi|168187020|ref|ZP_02621655.1| radical SAM protein, family [Clostridium botulinum C str. Eklund]
 gi|169295078|gb|EDS77211.1| radical SAM protein, family [Clostridium botulinum C str. Eklund]
          Length = 310

 Score = 63.0 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 35/208 (16%), Positives = 70/208 (33%), Gaps = 20/208 (9%)

Query: 181 TIQEGCDKFCTFCVVPYT------RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA 234
           TI +G    C +C    +      R   IS     + +  +     G             
Sbjct: 42  TISKG---GCIYCSERGSGDFAGDRHFSISSQFDDIKEMMKNKWKKGKYIAYF------- 91

Query: 235 WRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGD-LDVLMPYLHL 293
                                  +G+V L    + P  +SD ++    +  + +  ++ L
Sbjct: 92  QAYTNTYAPIEELRRKYEEAVREEGVVALSI-ATRPDCLSDEVVDLISEFNNKVYTWVEL 150

Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
            +Q+ ++   K +NR ++   +   + R+R    D+ + +  I G PGE  +D   T+  
Sbjct: 151 GLQTSNETTAKLINRGYSIPVFEDALTRLREKNIDVVVHT--IFGLPGEDREDMINTIRY 208

Query: 354 VDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           + +               GTP   + EQ
Sbjct: 209 LREKDIQGIKIHLLHLLKGTPMVKLYEQ 236


>gi|6324770|ref|NP_014839.1| Lip5p [Saccharomyces cerevisiae S288c]
 gi|417254|sp|P32875|LIPA_YEAST RecName: Full=Lipoyl synthase, mitochondrial; AltName: Full=Lipoate
           synthase; Short=LS; Short=Lip-syn; AltName: Full=Lipoic
           acid synthase; Flags: Precursor
 gi|306755852|sp|B3LJM6|LIPA_YEAS1 RecName: Full=Lipoyl synthase, mitochondrial; AltName: Full=Lipoate
           synthase; Short=LS; Short=Lip-syn; AltName: Full=Lipoic
           acid synthase; Flags: Precursor
 gi|306755853|sp|C7GWI3|LIPA_YEAS2 RecName: Full=Lipoyl synthase, mitochondrial; AltName: Full=Lipoate
           synthase; Short=LS; Short=Lip-syn; AltName: Full=Lipoic
           acid synthase; Flags: Precursor
 gi|306755854|sp|B5VS81|LIPA_YEAS6 RecName: Full=Lipoyl synthase, mitochondrial; AltName: Full=Lipoate
           synthase; Short=LS; Short=Lip-syn; AltName: Full=Lipoic
           acid synthase; Flags: Precursor
 gi|306755855|sp|A6ZP42|LIPA_YEAS7 RecName: Full=Lipoyl synthase, mitochondrial; AltName: Full=Lipoate
           synthase; Short=LS; Short=Lip-syn; AltName: Full=Lipoic
           acid synthase; Flags: Precursor
 gi|306755856|sp|C8ZGV5|LIPA_YEAS8 RecName: Full=Lipoyl synthase, mitochondrial; AltName: Full=Lipoate
           synthase; Short=LS; Short=Lip-syn; AltName: Full=Lipoic
           acid synthase; Flags: Precursor
 gi|1420467|emb|CAA99409.1| LIP5 [Saccharomyces cerevisiae]
 gi|45269982|gb|AAS56372.1| YOR196C [Saccharomyces cerevisiae]
 gi|151945289|gb|EDN63532.1| lipoic acid synthase [Saccharomyces cerevisiae YJM789]
 gi|190407512|gb|EDV10779.1| lipoic acid synthase [Saccharomyces cerevisiae RM11-1a]
 gi|207341044|gb|EDZ69210.1| YOR196Cp-like protein [Saccharomyces cerevisiae AWRI1631]
 gi|256269594|gb|EEU04876.1| Lip5p [Saccharomyces cerevisiae JAY291]
 gi|259149680|emb|CAY86484.1| Lip5p [Saccharomyces cerevisiae EC1118]
 gi|285815078|tpg|DAA10971.1| TPA: Lip5p [Saccharomyces cerevisiae S288c]
 gi|323331532|gb|EGA72947.1| Lip5p [Saccharomyces cerevisiae AWRI796]
          Length = 414

 Score = 63.0 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 87/235 (37%), Gaps = 16/235 (6%)

Query: 167 DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEIT 226
            GG ++ +     + + + C + C FC V   R       +    + A  +   G+  + 
Sbjct: 162 WGGKDKSKATATIMLLGDTCTRGCRFCSVKTNRTPSKPDPME-PENTAEAIKRWGLGYVV 220

Query: 227 LLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV 286
           L   +    R   +DG     ++ +  + + K    L  T S        ++       +
Sbjct: 221 LTTVD----RDDLVDGGANHLAETVRKI-KQKAPNTLVETLSGDFRGDLKMVDIMAQCGL 275

Query: 287 -LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDD 345
            +  +    V+S +  +     RR T  +   +++R ++  P +   +  ++G  GETD+
Sbjct: 276 DVYAHNLETVESLTPHVRD---RRATYRQSLSVLERAKATVPSLITKTSIMLGL-GETDE 331

Query: 346 DFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLRE 400
               T+  +  I        +Y  R     +    +V E VK E+    +++  E
Sbjct: 332 QITQTLKDLRNIQCDVVTFGQYM-RP----TKRHMKVVEYVKPEKFDYWKERALE 381


>gi|254561595|ref|YP_003068690.1| hypothetical protein METDI3182 [Methylobacterium extorquens DM4]
 gi|254268873|emb|CAX24834.1| conserved hypothetical protein, radical SAM domain protein
           [Methylobacterium extorquens DM4]
          Length = 249

 Score = 63.0 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/176 (15%), Positives = 67/176 (38%), Gaps = 14/176 (7%)

Query: 184 EGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
            GC   C+FC        +  R++  +  E   +  + V    L+          GL+  
Sbjct: 13  RGCPFTCSFCEWGTMESPKRVRAVDHLTQEFEAIAGHDVYAALLVD--------AGLNLN 64

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTT-SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
           +  F +L  +  E     R       +P  +    +     +     Y+ + +QS  + +
Sbjct: 65  RNAFLNLRRAAEESGFFERHGLICEVYPAAVRQEHLDFLATVSNA--YVGIGLQSFDNAV 122

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           L  ++R +    + +   ++ +V    +++ + I+G PG+  + FR   +   ++ 
Sbjct: 123 LAHVDRTYDERRFDETFAKLDAV---ASLAVEIILGLPGDNPETFRRNFERARRLP 175


>gi|47606303|sp|Q8THA2|Y4618_METAC RecName: Full=UPF0313 protein MA_4618
 gi|19918769|gb|AAM07954.1| conserved hypothetical protein [Methanosarcina acetivorans C2A]
          Length = 742

 Score = 63.0 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 47/262 (17%), Positives = 84/262 (32%), Gaps = 33/262 (12%)

Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSLS 208
           +D  Y +    E              V   LT   GC   C+FC +   +G  I SRS+ 
Sbjct: 416 LDHVYELPYTGEAHPSYTEPIPALEMVKFSLTTHRGCFGGCSFCAITQHQGRMITSRSIE 475

Query: 209 QVVDEARKLIDNGVCEITL--LGQNVNAWRGKG-----------------------LDGE 243
            V+ EA+KL +    +  +  +G       G G                       LD  
Sbjct: 476 SVLREAKKLTEKPDFKGIINGVGGPTANMYGMGCRSWEKQGACLDKACLYPRVCPALDTS 535

Query: 244 KCTFSDLLYSLSEIKGLVRLR--YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
                +L+  L E+ G+  +   Y   +   + D           +   L +  +  S R
Sbjct: 536 HKKLLELMKRLRELPGVKHVFTGYGVRYDLALEDEEYLEELCTHHISGQLRIAPEHFSKR 595

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIA----ISSDFIVGFPGETDDDFRATMDLVDKI 357
           +  +M++      Y +  ++  +          I +  + G PG T  D     + +   
Sbjct: 596 VTDAMSKPG-KKVYERFSEKFAAFNKKCGKEQYIVNYLMSGHPGCTLKDMIEMAEYLRDH 654

Query: 358 GYAQAFSFKYSPRLGTPGSNML 379
           G        ++P   T  + M 
Sbjct: 655 GGYTEQVQDFTPTPMTVSTCMY 676


>gi|226224077|ref|YP_002758184.1| coproporphyrinogen III oxidase [Listeria monocytogenes Clip81459]
 gi|225876539|emb|CAS05248.1| Putative coproporphyrinogen III oxidase [Listeria monocytogenes
           serotype 4b str. CLIP 80459]
          Length = 385

 Score = 63.0 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/200 (18%), Positives = 73/200 (36%), Gaps = 10/200 (5%)

Query: 186 CDKFCTFCVV--PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
           C+  C +C     +  G  +   +  ++ E       G          V    G      
Sbjct: 21  CEHICYYCDFNKVFLEGQPVDEYVDLLIKEMELTAAKGPIAPV---DTVFVGGGTPTTLN 77

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
           +   + L  ++  I  L +    +         L K     D  +  + + VQS ++ +L
Sbjct: 78  EAQIARLCTAIHNILPLKKDIEFSFEANPGDLSLSKLQAMQDHRVNRISMGVQSFNNELL 137

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           K + R HT  +  Q ++ +R +  +  +S D I   PG+T+ DF+ T+     +      
Sbjct: 138 KKIGRIHTVKDVYQSVENMRKIGFE-NVSIDLIFSLPGQTEADFQDTLK--QALDLDLPH 194

Query: 364 SFKYS--PRLGTPGSNMLEQ 381
              YS      T   N++++
Sbjct: 195 YSAYSLIIEPKTIFYNLMQK 214


>gi|116072115|ref|ZP_01469383.1| Elongator protein 3/MiaB/NifB [Synechococcus sp. BL107]
 gi|116065738|gb|EAU71496.1| Elongator protein 3/MiaB/NifB [Synechococcus sp. BL107]
          Length = 518

 Score = 63.0 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 45/289 (15%), Positives = 89/289 (30%), Gaps = 37/289 (12%)

Query: 95  IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVV-VGPQTYYRLPELLERARFGKRVVDTD 153
            +       V+ G       E++ +  P   +V +G         L  ++  G+R     
Sbjct: 130 RRHHPGARAVLGGGAVSVFYEQLGKSLPKGTIVSIGEGEPLLEKLLQGQSLEGERCFLVG 189

Query: 154 YSVE------------------DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
            S                    D    +      Y         +  + GC   C +CV 
Sbjct: 190 ESPRSGLIHEQPESRPKTACDYDYIASIWPQLNWYLEGGDFYVGVQTKRGCPHNCCYCVY 249

Query: 196 PYTRGIEISR-SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL 254
               G ++    + +VV E R+L D GV             R    D +     +LL ++
Sbjct: 250 TVVEGKQVRLNPVQEVVKEMRQLYDRGVRGFWFTDAQFIPARRYIEDAK-----ELLRAI 304

Query: 255 SEIKGLVRLRY-TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
            + +GL  +R+       ++   L +   +    M Y  + + SGS  +++ M   +   
Sbjct: 305 -KAEGLTGIRWAAYIRADNLDPELAQLMVETG--MSYFEIGITSGSQELVRKMRMGYNLR 361

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFP----GETDDDFRATMDLVDKIG 358
              +    +     D        V +      E  +  R T+    ++ 
Sbjct: 362 TVLESCRML----ADAGFRDHVSVNYSFNVIDERPETIRQTVAYHRELE 406


>gi|120609065|ref|YP_968743.1| lipoyl synthase [Acidovorax citrulli AAC00-1]
 gi|171769174|sp|A1TJ31|LIPA_ACIAC RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|120587529|gb|ABM30969.1| lipoic acid synthetase [Acidovorax citrulli AAC00-1]
          Length = 332

 Score = 63.0 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/221 (14%), Positives = 78/221 (35%), Gaps = 12/221 (5%)

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
           + +  ++ +    E  S  + G    +G   F+ + + C + C FC V + R   +    
Sbjct: 62  KEILREHKLHTVCEEASCPNIGECFGKGTATFMIMGDKCTRRCPFCDVGHGRPDPL--DK 119

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
            + ++ AR +    +  + +   +    R    DG    F + + ++  +    ++    
Sbjct: 120 DEPLNLARTIAALKLKYVVITSVD----RDDLRDGGSGHFVECIQNIRALSPATQIEILV 175

Query: 268 SHPRDMSDCLIKAH-GDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
              R   D  ++        +M +        + R+ K             ++ + +++ 
Sbjct: 176 PDFRGRDDRALEILKAAPPDVMNHNL----ETAPRLYKEARPGSDYQFSLNLLKKFKALH 231

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           P +   S  +VG  GETD++    M  +           +Y
Sbjct: 232 PGVPTKSGIMVGL-GETDEEILQVMRDMRAHDIDMLTIGQY 271


>gi|160872119|ref|ZP_02062251.1| lipoic acid synthetase [Rickettsiella grylli]
 gi|159120918|gb|EDP46256.1| lipoic acid synthetase [Rickettsiella grylli]
          Length = 316

 Score = 63.0 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/208 (15%), Positives = 73/208 (35%), Gaps = 12/208 (5%)

Query: 161 ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN 220
           E  +  +      +G   F+ + + C + CTFC V + R   +     +  + A  +   
Sbjct: 64  EEAACPNLSECFSQGTATFMIMGDKCTRRCTFCDVGHGRPDPL--DPDEPFNLANTVQQM 121

Query: 221 GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKA 280
           G+  + +   +    R    DG    F+  L +L +    + +       R   +  ++A
Sbjct: 122 GLRYVVITSVD----RDDLRDGGAGHFTACLQALRKQCPALTIEVLVPDFRGRMELALQA 177

Query: 281 HG-DLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGF 339
              +L  +  +    +     R+ K +          Q++   +   P I   S  ++G 
Sbjct: 178 IAPELPDVFNHNIETI----PRLYKQVRPGSDYQWSLQLLLEFKQRFPGIPTKSGLMLGL 233

Query: 340 PGETDDDFRATMDLVDKIGYAQAFSFKY 367
            GET D+    +  + +         +Y
Sbjct: 234 -GETRDEVENVLHDLRRHHVDMITIGQY 260


>gi|296269131|ref|YP_003651763.1| oxygen-independent coproporphyrinogen III oxidase [Thermobispora
           bispora DSM 43833]
 gi|296091918|gb|ADG87870.1| oxygen-independent coproporphyrinogen III oxidase [Thermobispora
           bispora DSM 43833]
          Length = 403

 Score = 63.0 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 52/253 (20%), Positives = 89/253 (35%), Gaps = 18/253 (7%)

Query: 167 DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEIT 226
           DG  +R  G    +     C   C +C        E+    +     A  +I        
Sbjct: 20  DGLGSRPFGFYVHVPF---CATRCGYCDFNTYTAAEL-GPGASPAGYADTVIQEVRLARR 75

Query: 227 LLGQNVNAWRGKGLDGEKCTF---SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGD 283
           +LG            G   T    +DL+  L  I G   L        + +   +     
Sbjct: 76  VLGDAAPRVETVFFGGGTPTLLPAADLVRILRAIAGEFGLAPGAEVTTEANPESVSP-AY 134

Query: 284 LDVL----MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGF 339
           L+ L       +   +QS  + +L+ ++RRHT     Q +    +      ++ D I   
Sbjct: 135 LEELRAGGFTRVSFGMQSAREHVLRVLDRRHTPGRAVQAVREAHAA-GFAHVNLDLIYNT 193

Query: 340 PGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM-----LEQVDENVKAERLLCL 394
           PGE+DDD+RAT++     G     ++      GT  +       L   DE+V A+R L  
Sbjct: 194 PGESDDDWRATLETALAAGPDHVSAYSLIVEDGTRLAARVRRGELPMPDEDVAADRYLIA 253

Query: 395 QKKLREQQVSFND 407
           ++ L      + +
Sbjct: 254 EELLSAAGFRWYE 266


>gi|253702125|ref|YP_003023314.1| radical SAM protein [Geobacter sp. M21]
 gi|251776975|gb|ACT19556.1| Radical SAM domain protein [Geobacter sp. M21]
          Length = 444

 Score = 63.0 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 50/277 (18%), Positives = 91/277 (32%), Gaps = 19/277 (6%)

Query: 99  GDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVED 158
             + VV  G  A A  EE        + VV  +     P++L+  R G  +       + 
Sbjct: 80  RGIKVVFGGMHASAMPEEAKGHG---DAVVIGEGESVWPQVLKDFRAG-TLQSFYRGEQL 135

Query: 159 KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV-PYTRGIEISRSLSQVVDEARKL 217
           +   +     G  +       +    GC   CTFC V P+       R +  VV +   +
Sbjct: 136 ELTDMPTPLYGMLQDNHQFRIVNTSRGCPFNCTFCSVKPFFGAKIRFRPIDDVVRDVAAI 195

Query: 218 IDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR-LRYTTSHPRDMSDC 276
            +        +G     W       E     DL  +L                       
Sbjct: 196 PEKMYE----IGDENLWWAS-----ETQRAIDLFTALKGSPKKYMAFGSLGPVLAPEGSR 246

Query: 277 LIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFI 336
           ++ A  +  +L  ++     + S+  LK+          R+   R       I +S  ++
Sbjct: 247 MLNAARESGLLSVWVGW--DAISEHSLKAYKANGKIGVDRERAVRTLK-DHGIDVSLFYM 303

Query: 337 VGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
           +G   +T DDF+  +++ D++G +        P  GT
Sbjct: 304 LGSREDTFDDFKRAIEVADRLGVS-MHPSLVVPYPGT 339


>gi|15896484|ref|NP_349833.1| hypothetical protein CA_C3238 [Clostridium acetobutylicum ATCC 824]
 gi|15026311|gb|AAK81173.1|AE007819_9 Ucharacterized Fe-S oxidoreductase [Clostridium acetobutylicum ATCC
           824]
          Length = 324

 Score = 63.0 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 39/207 (18%), Positives = 73/207 (35%), Gaps = 20/207 (9%)

Query: 181 TIQEGCDKFCTFCVVPYT------RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA 234
           TI  G    C FC    +      R   IS     + D  +    NG             
Sbjct: 53  TISRG---GCMFCSERGSGDFAGNRKFSISTQFEDIKDMMKNKWKNGKYIAYFQA----- 104

Query: 235 WRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGD-LDVLMPYLHL 293
                    K        ++S+  G+V L    + P  +S+ ++    +    +  ++ L
Sbjct: 105 -YTNTYAPIKVLREKYSEAISK-DGVVGLAI-ATRPDCLSEEVLDLIQEFSKRIYVWVEL 161

Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
            +Q+ +D++ K +NR +    +   + ++R  + D+ + +  I G PGE   D  +T+D 
Sbjct: 162 GLQTANDKVAKVINRGYDTIVFDDAVKKLRERKIDVVVHT--IFGLPGEKPKDMLSTIDY 219

Query: 354 VDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           V                 GTP   +  
Sbjct: 220 VAHKEVQGIKIHLLHLMRGTPLVELYN 246


>gi|288802235|ref|ZP_06407675.1| radical SAM domain protein [Prevotella melaninogenica D18]
 gi|288335202|gb|EFC73637.1| radical SAM domain protein [Prevotella melaninogenica D18]
          Length = 616

 Score = 63.0 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 49/311 (15%), Positives = 95/311 (30%), Gaps = 64/311 (20%)

Query: 126 VVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT-------- 177
            +           +L+       VV+  Y      E  +  D  Y R+            
Sbjct: 187 HIEEESNKKHAQRILQAVDNVYAVVNPPYPTMTTEEVDAAYDLPYTREPHPKYRGKTIPA 246

Query: 178 -----AFLTIQEGCDKFCTFCVVPYTRGIEIS-RSLSQVVDEARKLIDN----------G 221
                  + I  GC   C+FC +   +G  IS RS   ++ E +++I            G
Sbjct: 247 YEMIKHSVNIHRGCFGGCSFCTISAHQGKFISCRSKESILKEVKQVIQMPDFKGYLSDLG 306

Query: 222 VCEITLLGQ---------------NVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
                + G                 VN      L+ +     ++ +++ E+ G+ +    
Sbjct: 307 GPSANMYGMAGKNQKACEHCKRPSCVNPEICPNLETDHTKLLEIYHAVDELPGIKKSFIG 366

Query: 267 TSHPRDMSDCLIKAHGDLD---------------VLMPYLHLPVQSGSDRILKSMNRR-- 309
           +    D+   L+    D                  +   L +  +  SDR+L  M +   
Sbjct: 367 SGVRYDL---LLHKSKDEKSNEAARQYTRELITRHVSGRLKVAPEHTSDRVLNLMRKPSF 423

Query: 310 ---HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
              +   +    I+R  ++R  I     FI   PG  ++D      L   + +       
Sbjct: 424 QQFYAFKKIFDRINREENMRQQIIPY--FISSHPGCQEEDMAELAVLTKNLDFHLEQVQD 481

Query: 367 YSPRLGTPGSN 377
           ++P   T  + 
Sbjct: 482 FTPTPMTVSTE 492


>gi|228993704|ref|ZP_04153610.1| Lipoyl synthase [Bacillus pseudomycoides DSM 12442]
 gi|228999741|ref|ZP_04159316.1| Lipoyl synthase [Bacillus mycoides Rock3-17]
 gi|229007298|ref|ZP_04164898.1| Lipoyl synthase [Bacillus mycoides Rock1-4]
 gi|228753956|gb|EEM03394.1| Lipoyl synthase [Bacillus mycoides Rock1-4]
 gi|228760003|gb|EEM08974.1| Lipoyl synthase [Bacillus mycoides Rock3-17]
 gi|228766038|gb|EEM14686.1| Lipoyl synthase [Bacillus pseudomycoides DSM 12442]
          Length = 298

 Score = 63.0 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 38/214 (17%), Positives = 79/214 (36%), Gaps = 13/214 (6%)

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           ++V ++ +  +I +    RK     F+ +   C + C FC V      E+   L +    
Sbjct: 37  HTVCEEAKCPNIHECWAVRK--TATFMILGAVCTRACRFCAVKTGLPTEL--DLQEPERV 92

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
           A  ++  G+  + +        R    DG    F++ + ++        +    S    +
Sbjct: 93  ADSVVHMGLKHVVITAV----ARDDLKDGGAAVFAETVRAVRRKNPFTSIEVLPSDMGGV 148

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
            + L         ++ +    V+  SDR+      ++      + + R + ++PDI   S
Sbjct: 149 EENLKMLMDAKPDILNHNIETVRRLSDRV--RARAKYDRS--LEFLRRAKEMQPDIPTKS 204

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
             +VG  GET +D    MD +           +Y
Sbjct: 205 SIMVGL-GETREDLIEAMDDLRANNVDILTLGQY 237


>gi|161484932|ref|NP_619474.2| hypothetical protein MA4618 [Methanosarcina acetivorans C2A]
          Length = 614

 Score = 63.0 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 47/262 (17%), Positives = 84/262 (32%), Gaps = 33/262 (12%)

Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSLS 208
           +D  Y +    E              V   LT   GC   C+FC +   +G  I SRS+ 
Sbjct: 288 LDHVYELPYTGEAHPSYTEPIPALEMVKFSLTTHRGCFGGCSFCAITQHQGRMITSRSIE 347

Query: 209 QVVDEARKLIDNGVCEITL--LGQNVNAWRGKG-----------------------LDGE 243
            V+ EA+KL +    +  +  +G       G G                       LD  
Sbjct: 348 SVLREAKKLTEKPDFKGIINGVGGPTANMYGMGCRSWEKQGACLDKACLYPRVCPALDTS 407

Query: 244 KCTFSDLLYSLSEIKGLVRLR--YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
                +L+  L E+ G+  +   Y   +   + D           +   L +  +  S R
Sbjct: 408 HKKLLELMKRLRELPGVKHVFTGYGVRYDLALEDEEYLEELCTHHISGQLRIAPEHFSKR 467

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIA----ISSDFIVGFPGETDDDFRATMDLVDKI 357
           +  +M++      Y +  ++  +          I +  + G PG T  D     + +   
Sbjct: 468 VTDAMSKPG-KKVYERFSEKFAAFNKKCGKEQYIVNYLMSGHPGCTLKDMIEMAEYLRDH 526

Query: 358 GYAQAFSFKYSPRLGTPGSNML 379
           G        ++P   T  + M 
Sbjct: 527 GGYTEQVQDFTPTPMTVSTCMY 548


>gi|134098063|ref|YP_001103724.1| coproporphyrinogen III oxidase [Saccharopolyspora erythraea NRRL
           2338]
 gi|133910686|emb|CAM00799.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Saccharopolyspora erythraea NRRL 2338]
          Length = 409

 Score = 63.0 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 52/240 (21%), Positives = 87/240 (36%), Gaps = 23/240 (9%)

Query: 171 NRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI--SRSLSQVVDEARKLIDNGVCEITLL 228
           +R  GV   +     C   C +C        E+  S      ++  R  +D G   +   
Sbjct: 27  SRPFGVYVHVPF---CATRCGYCDFNTYTADELGSSAGFGSWLEGLRAELDLGARVLAAG 83

Query: 229 GQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMS---------DCLIK 279
           G+ V A       G   +       L E+   VR  +  +   +++             +
Sbjct: 84  GEPVPAAGTVFAGGGTPSL-LGAERLGEVLDAVRSSFGLADGAEVTTESNPESTSPEFFE 142

Query: 280 AHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGF 339
                      + L +QS +  +L+ + RRHT     +     R+      ++ D I G 
Sbjct: 143 GIAAAG--YTRVSLGMQSAAQHVLRVLERRHTPGRAVEAAREARAAGFG-HVNLDLIYGT 199

Query: 340 PGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM-----LEQVDENVKAERLLCL 394
           PGETDDD RA++D V + G     ++      GT  +       L   DE+V A+R   L
Sbjct: 200 PGETDDDLRASLDAVLEAGVDHVSAYSLIVEDGTAMARKVRRGDLPMPDEDVLADRYELL 259


>gi|116748874|ref|YP_845561.1| radical SAM domain-containing protein [Syntrophobacter fumaroxidans
           MPOB]
 gi|116697938|gb|ABK17126.1| Radical SAM domain protein [Syntrophobacter fumaroxidans MPOB]
          Length = 631

 Score = 63.0 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 52/303 (17%), Positives = 92/303 (30%), Gaps = 42/303 (13%)

Query: 99  GDLLVVVAGCVAQAEGEEIL---RRSPIVNVVVGPQTYYRLPELLERARFGKRVVDT--- 152
            +        +      E+         V+ V+  +    LP L    R G  +      
Sbjct: 124 RNAAPGCTIVMGGHHPTELYESVMECGAVDFVLRGEGEASLPLLARAVRAGSGIEHVPGI 183

Query: 153 ------------DYSVEDKFERLSIVDGG------YNRKRGVTAFLTIQEGCDKFCTFCV 194
                       D +V D  +R  +   G      Y R     A +T   GC   C++C 
Sbjct: 184 VYRAAEGGLRAADPAVMDDLDRYPLPAQGLIDGKFYRRGARGAAVVTASRGCPLRCSYCS 243

Query: 195 VPYT-RGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKG---LDGEKCTFSD 249
           +          RS+  V+ E    ++  G   I    +N++  +      LDG    F  
Sbjct: 244 IGGAEWLKYRRRSVDSVLREIEVAVNEYGAGFIDFEDENLSLRKPWFMELLDGITGRFGA 303

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
               L  + GL         P  + + ++ A  +       L+L + S      +   R 
Sbjct: 304 GRLELRAMNGLF--------PPSLDEEMVSAMKEAG--FTALNLSLGSACPEQARRFGRP 353

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369
                + + +     V   +      IVG PG++  D    +  + +     A    Y P
Sbjct: 354 DVRDGFERALAWAEQV--GLNAVGYVIVGAPGQSAADSVDDLLYLAE-RPVVAGVSVYYP 410

Query: 370 RLG 372
             G
Sbjct: 411 APG 413


>gi|308274500|emb|CBX31099.1| hypothetical protein N47_E46110 [uncultured Desulfobacterium sp.]
          Length = 451

 Score = 63.0 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/195 (15%), Positives = 71/195 (36%), Gaps = 13/195 (6%)

Query: 173 KRGVTAFLTIQEGCDKFCTFCVVPYTRG-IEISRSLSQVVDEARKLIDNGVCEITLLGQN 231
           K G  A +  + GC+  C +C  P   G     R  + VV++   LI++          +
Sbjct: 176 KSGNIASVQTKRGCNHKCIYCSYPLLEGAAVRLRDPASVVNDIESLINDHKVGYIFFTDS 235

Query: 232 VNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL 291
           V        D ++     +    +    +    +       + D  I    +    +  +
Sbjct: 236 V------FNDDDEAYLEVVSEMKNRNINIPWTAFFKPEG--LKDEHIALMKETG--LKAV 285

Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351
            +   + +D  LK + +    ++   + + + + R  +A +  ++ G PGET D     +
Sbjct: 286 EIGADASTDTTLKRLGKPF-RFKDIALCNDLFA-RHQVATAHFYMFGCPGETRDTVIEGL 343

Query: 352 DLVDKIGYAQAFSFK 366
           + +  +    +F F 
Sbjct: 344 ENIKSLKNTVSFIFM 358


>gi|288553508|ref|YP_003425443.1| Mg-protoporphyrin IX monomethyl ester oxidative cyclase [Bacillus
           pseudofirmus OF4]
 gi|288544668|gb|ADC48551.1| Mg-protoporphyrin IX monomethyl ester oxidative cyclase [Bacillus
           pseudofirmus OF4]
          Length = 585

 Score = 63.0 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 50/289 (17%), Positives = 96/289 (33%), Gaps = 29/289 (10%)

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER- 142
           +     +     K   ++ +V+ G     + +E L  +P  + +V  +      +LLE  
Sbjct: 67  IEETLKVIEMLKKVMPEVKIVLGGPEVSYDTKEWLEMTPDADFIVVGEGEETFKQLLEEL 126

Query: 143 -------------ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT---AFLTIQEGC 186
                         R G+ V+      + K + +           G+T    +     GC
Sbjct: 127 STTAKYHMVFGLAYRKGEEVIINAPRPKLKLDEVPTPYRFDEDLDGLTKRVTYFETSRGC 186

Query: 187 DKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT 246
              C FC+     G      + +V  +   LI+NG   I  + +  N  R          
Sbjct: 187 PYSCQFCLSSIEVG-VRYIDIDRVKSDLLYLIENGAKLIKFVDRTFNIKRD-------YA 238

Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL-DVLMPYLHLPVQSGSDRILKS 305
                + +   +G V     T+    M   ++    +     +    + VQS +D   + 
Sbjct: 239 LEIFQFLIDNHQGCVFQFEITADI--MRPEVLSFLNEHAPKGIFRFEIGVQSTNDATNEL 296

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           + RR    +  + +  ++     I    D I G P E  + FR T + V
Sbjct: 297 VQRRQNFQKLTRTVTMVKEG-GKIDQHLDLIAGLPEEDYNSFRNTFNDV 344


>gi|239817841|ref|YP_002946751.1| lipoyl synthase [Variovorax paradoxus S110]
 gi|259494944|sp|C5CP21|LIPA_VARPS RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|239804418|gb|ACS21485.1| lipoic acid synthetase [Variovorax paradoxus S110]
          Length = 327

 Score = 63.0 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 43/268 (16%), Positives = 96/268 (35%), Gaps = 23/268 (8%)

Query: 109 VAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK--------RVVDTDYSVEDKF 160
           +A+ +    L R P+   VV      + PE + R + G         + +  + ++    
Sbjct: 19  LAKQKAAAKLSRIPV--KVVQQGEVLKKPEWI-RVKAGSPTTRFYEIKQILRESNLHTVC 75

Query: 161 ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN 220
           E  S  + G     G   F+ + + C + C FC V + R   +     + ++ A+ +   
Sbjct: 76  EEASCPNIGECFGNGTATFMIMGDKCTRRCPFCDVGHGRPDPL--DKDEPLNLAKTIAKL 133

Query: 221 GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKA 280
            +  + +   +    R    DG    F D + ++ E+  + ++       R   D  ++ 
Sbjct: 134 RLKYVVITSVD----RDDLRDGGSQHFVDCITNIRELSPMTQIEILVPDFRGRDDRALEI 189

Query: 281 H-GDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGF 339
                  +M +        + R+ K             ++ + +++ P +   S  +VG 
Sbjct: 190 LKAAPPDVMNHNL----ETAPRLYKEARPGSDYQFSLNLLKKFKALHPQVPTKSGIMVGL 245

Query: 340 PGETDDDFRATMDLVDKIGYAQAFSFKY 367
            GETD++    M  +           +Y
Sbjct: 246 -GETDEEILQVMRDMRAHDIDMLTIGQY 272


>gi|88807956|ref|ZP_01123467.1| Elongator protein 3/MiaB/NifB [Synechococcus sp. WH 7805]
 gi|88787995|gb|EAR19151.1| Elongator protein 3/MiaB/NifB [Synechococcus sp. WH 7805]
          Length = 538

 Score = 63.0 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 45/290 (15%), Positives = 86/290 (29%), Gaps = 33/290 (11%)

Query: 92  NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVV-VGPQTYYRLPELLERARFGKRVV 150
           +   +       V+ G       E++ R  P   +V +G         L  ++  G+R  
Sbjct: 147 HRARRYQPQARAVLGGGAVSVFYEQLGRSLPKGTIVSIGEGEPLLEKLLKGQSLEGERCF 206

Query: 151 DTDYSVE------------------DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTF 192
                                    D    +      Y         +  + GC   C +
Sbjct: 207 VVGAPPRAGLIHEQPESRPKTACDYDYIASIWPQLDWYLEGGDFYVGVQTKRGCPHNCCY 266

Query: 193 CVVPYTRGIEISR-SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLL 251
           CV     G ++    + +VV E R+L D GV             R    D +     +LL
Sbjct: 267 CVYTVVEGKQVRLNPVDEVVKEMRQLYDRGVRGFWFTDAQFIPARRYIEDAK-----ELL 321

Query: 252 YSLSEIKGLVRLRY-TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
            ++ + +GL  +R+       ++   L +   D    M Y  + + SGS  +++ M   +
Sbjct: 322 RAI-KAEGLTGIRWAAYIRADNLDPELAQLMVDTG--MSYFEIGITSGSQELVRKMRMGY 378

Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPG--ETDDDFRATMDLVDKIG 358
                      +                F    E  +  R T+    ++ 
Sbjct: 379 NLRTVLDSCRMLAKA--GFKDHVSVNYSFNVIDERPETIRQTVAYHRELE 426


>gi|260436647|ref|ZP_05790617.1| elongator protein 3/MiaB/NifB [Synechococcus sp. WH 8109]
 gi|260414521|gb|EEX07817.1| elongator protein 3/MiaB/NifB [Synechococcus sp. WH 8109]
          Length = 529

 Score = 63.0 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 45/305 (14%), Positives = 92/305 (30%), Gaps = 37/305 (12%)

Query: 79  KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVV-VGPQTYYRLP 137
           ++      +R               V+ G       E++ +  P   VV +G        
Sbjct: 125 ELRRNQRLVRQGLKRARHHQPAARAVLGGGAVSVFYEQLGKSLPKGTVVSIGEGEPLLEK 184

Query: 138 ELLERARFGKRVVDTDYSVE------------------DKFERLSIVDGGYNRKRGVTAF 179
            +  ++  G+R      +                    D    +      Y         
Sbjct: 185 LIQGQSLEGERCFVVGEAPRSGLIHEQPESRPKTACNYDYIASIWPQLDWYLEGGDFYVG 244

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISR-SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK 238
           +  + GC   C +CV     G ++    + +VV E R+L D GV             R  
Sbjct: 245 VQTKRGCPHNCCYCVYTVVEGKQVRLNPVDEVVKEMRQLYDRGVRGFWFTDAQFIPARRY 304

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRY-TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQS 297
             D +     +LL ++ + +GL  +R+       ++   L +   +    M Y  + + S
Sbjct: 305 IEDAK-----ELLRAI-KAEGLTGIRWAAYIRADNLDPELAQLMVETG--MSYFEIGITS 356

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFP----GETDDDFRATMDL 353
           GS  +++ M   +      +    +     D        V +      E  +  R T+  
Sbjct: 357 GSQELVRKMRMGYNLRTVLESCRML----ADAGFRDHVSVNYSFNVIDERPETIRQTVAY 412

Query: 354 VDKIG 358
             ++ 
Sbjct: 413 HRELE 417


>gi|150391225|ref|YP_001321274.1| radical SAM domain-containing protein [Alkaliphilus metalliredigens
           QYMF]
 gi|149951087|gb|ABR49615.1| Radical SAM domain protein [Alkaliphilus metalliredigens QYMF]
          Length = 441

 Score = 63.0 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 56/375 (14%), Positives = 130/375 (34%), Gaps = 58/375 (15%)

Query: 35  QMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSR 94
           Q  VYD      +     +  V    + D+++L              + +G+I       
Sbjct: 40  QHRVYD-----GLLEKGSFRAVFEAYEPDVLLL----------TGYITAVGKIIAYSQYA 84

Query: 95  IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER------------ 142
            K    + V+V G  A+   E+    +  ++++V       L ELL+             
Sbjct: 85  KKSHRQIKVIVGGVHAEINYEDFFVDT--IDIIVHSNGLSTLNELLQHDFHLEIMRGLKG 142

Query: 143 -ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKR---------GVTAFLTIQEGCDKFCTF 192
            A         + SV     ++ + +  Y  K             A +     C   C F
Sbjct: 143 IALRHGDQWTVNESVPTALTQMPLPNRDYFEKHQHRTKYMSYSPVAIVKTALSCPHGCHF 202

Query: 193 CVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLY 252
           C            +  ++ +   ++   G   I ++  +           ++      + 
Sbjct: 203 CYCKLLNTGL--YATREINEVVEEISGIGAPYIWIVDDSFL--------LDRQRTRQFIE 252

Query: 253 SLSEIKGLVR--LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
           ++ +I G+ +  + Y+       ++ +++   ++  +   L + +++  D +LK  N+  
Sbjct: 253 AI-KISGIRKKFIAYSRVDFVVNNEDILQQLKEIGFI--ELIIGMEAVDDSMLKDFNKAA 309

Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370
           T  E  + +  ++    DI +++ FIVG   +   DF+     + +          ++P 
Sbjct: 310 TVDENSRTVTLLKKY--DIKLTALFIVGIDFKV-GDFKKMRHWIRRRKLQSFTVSIFTPM 366

Query: 371 LGTPGS-NMLEQVDE 384
            GT G  +  E++ E
Sbjct: 367 KGTQGYGDYEEKIQE 381


>gi|239906448|ref|YP_002953189.1| oxygen-independent coproporphyrinogen III oxidase [Desulfovibrio
           magneticus RS-1]
 gi|239796314|dbj|BAH75303.1| oxygen-independent coproporphyrinogen III oxidase [Desulfovibrio
           magneticus RS-1]
          Length = 375

 Score = 63.0 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 38/201 (18%), Positives = 70/201 (34%), Gaps = 19/201 (9%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEK 244
           C   C +C         +SR L   + E          EI   G+ +   + + +  G  
Sbjct: 10  CRSKCRYCA-------FVSRPLD--MAEVEVYATALPLEIRHFGKKLGRPKVETIYFGGG 60

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDC------LIKAHGDL--DVLMPYLHLPVQ 296
                  ++LS I   +   +      + +        L + +  +     +  L L VQ
Sbjct: 61  TPTLLPPWALSRILPEITRHFDVHPAVEWTFEGNPDSALDQQYLSILVGAGVNRLSLGVQ 120

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
           S SD +LK++ R H A   +   +  R       IS D I G PG+ +  +   +    +
Sbjct: 121 SFSDAMLKTLGRPHDARTAQLAFEAARKA-GFANISLDLIWGLPGQREASWMEDLKAAVR 179

Query: 357 IGYAQAFSFKYSPRLGTPGSN 377
           +       +  +   GTP + 
Sbjct: 180 LRPEHLSCYGLTLEPGTPLAA 200


>gi|239905107|ref|YP_002951846.1| hypothetical protein DMR_04690 [Desulfovibrio magneticus RS-1]
 gi|239794971|dbj|BAH73960.1| hypothetical protein [Desulfovibrio magneticus RS-1]
          Length = 334

 Score = 63.0 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 51/120 (42%), Gaps = 3/120 (2%)

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300
            G     + L+  L+ +  +  L    + P  +    I       V    L + +QS +D
Sbjct: 110 YGPPERLAALVAELATLPDIEGL-CLGTRPDCLDLEKIALLAAAPVGHVRLEMGLQSAND 168

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
             L+ + R HT  ++ +    I +    +A+++  + G PGE  +DF AT+  V  +  A
Sbjct: 169 ATLRRIGRGHTTADFAR--ATIMAADAGLAVTAHLMAGLPGEGVEDFLATVRFVAALPIA 226


>gi|316969964|gb|EFV53982.1| transmembrane and coiled-coil domain-containing protein 4
           [Trichinella spiralis]
          Length = 1094

 Score = 63.0 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 30/54 (55%)

Query: 36  MNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRN 89
           MN  D   +  +     +E  ++  +AD+++L TC IR+ A EK++  + ++R 
Sbjct: 518 MNFNDVEIVRAILTKASFEETDNAKEADVVLLMTCAIRQSAEEKIWKRVKQLRK 571



 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 1/57 (1%)

Query: 373 TPGSNML-EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL 428
           T       + V  +VK  R   LQ + R+  +  N   +G+ + VL+EK      ++
Sbjct: 674 TKAHRRYCDDVPIDVKKARSQQLQNEFRKGALILNRKFIGKTLTVLVEKINDASSEV 730


>gi|261253679|ref|ZP_05946252.1| lipoate synthase [Vibrio orientalis CIP 102891]
 gi|260937070|gb|EEX93059.1| lipoate synthase [Vibrio orientalis CIP 102891]
          Length = 321

 Score = 63.0 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/182 (16%), Positives = 62/182 (34%), Gaps = 10/182 (5%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V    G  ++    +    A+ + D  +  + +   +    R    DG   
Sbjct: 94  CTRRCPFCDV--AHGRPLTPEADEPKKLAKTIQDMKLKYVVITSVD----RDDLRDGGAQ 147

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
            F+D    +  +   +R+       R   D  +    D     P +       + R+ + 
Sbjct: 148 HFADCNREIRALNPNIRIETLVPDFRGRMDVALDLMKDNP---PDVFNHNLETAPRLYRK 204

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
                      Q++ + +   PDI   S  ++G  GET ++    +  + + G       
Sbjct: 205 ARPGANYKWSLQLLQKFKEQHPDIPTKSGVMMGL-GETKEEIIQVLKDLREHGVTMLTLG 263

Query: 366 KY 367
           +Y
Sbjct: 264 QY 265


>gi|167622996|ref|YP_001673290.1| putative radical SAM protein [Shewanella halifaxensis HAW-EB4]
 gi|167353018|gb|ABZ75631.1| conserved hypothetical radical SAM protein [Shewanella halifaxensis
           HAW-EB4]
          Length = 313

 Score = 63.0 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 43/199 (21%), Positives = 78/199 (39%), Gaps = 16/199 (8%)

Query: 188 KFCTFCVV---PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK 244
             CT+C V    +    E+S  + + + + R+ +     +     Q   +   + L  ++
Sbjct: 43  GGCTYCNVASFSHEHKTELS--IQEQLAQGRERLSTKSSKYIAYFQAYTSTYDEYLVLKQ 100

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHG--DLDVLMPYLHLPVQSGSDRI 302
                +    S+I GL       + P  + D +++       D +  +L L +QS +DR 
Sbjct: 101 KYDEAIQD--SDIVGL----CVGTRPDCVPDEVLELLVGYQNDGVDVWLELGLQSANDRT 154

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           LK +NR H    Y   + R R +   I + +  I+G PGE  +D+  T+D V  +G    
Sbjct: 155 LKKINRGHDFAAYEDTVKRARRL--GIKVCTHLILGLPGEGHEDYLETLDKVLAVGVDGL 212

Query: 363 FSFKYSPRLG-TPGSNMLE 380
                    G T       
Sbjct: 213 KLHPLHIVEGSTMAKAWRN 231


>gi|325276747|ref|ZP_08142462.1| lipoyl synthase [Pseudomonas sp. TJI-51]
 gi|324098130|gb|EGB96261.1| lipoyl synthase [Pseudomonas sp. TJI-51]
          Length = 338

 Score = 63.0 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 35/214 (16%), Positives = 74/214 (34%), Gaps = 10/214 (4%)

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           + +    E  S  + G     G   F+ + + C + C FC V + R   +   L +  + 
Sbjct: 78  HKLHSVCEEASCPNLGECFSGGTATFMIMGDICTRRCPFCDVGHGRPKPL--DLDEPKNL 135

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
           A  + D  +  + +   +    R    DG    F+D +  +  +   V+L       R  
Sbjct: 136 AVAIADLRLKYVVITSVD----RDDLRDGGAQHFADCIREIRALSPGVQLETLVPDYRGR 191

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
            D  ++         P +         R+ K+            ++ + + + P +   S
Sbjct: 192 MDVALEITAQEP---PDVFNHNLETVPRLYKAARPGSDYDWSLDLLQKFKQLVPHVPTKS 248

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
             ++G  GETD++    M  + +         +Y
Sbjct: 249 GLMLGL-GETDEEVIEVMHRMREHDIDMLTLGQY 281


>gi|282878786|ref|ZP_06287554.1| radical SAM domain protein [Prevotella buccalis ATCC 35310]
 gi|281299177|gb|EFA91578.1| radical SAM domain protein [Prevotella buccalis ATCC 35310]
          Length = 479

 Score = 63.0 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 54/291 (18%), Positives = 104/291 (35%), Gaps = 19/291 (6%)

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
              R  K +       + V + G    +  +E    +  + +  G + + R  + L    
Sbjct: 71  NAYRAYKIADSYRQRGVFVALGGLHVTSLPDEASLHADTILLGPGEEAFPRFIKDLREGH 130

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
             KR V +  S+E+        D     K  V   L +  GC   C FC      G   S
Sbjct: 131 PQKRYVASWRSLENIPP--VRRDLIKREKYFVPNSLVVSRGCPHHCDFCYKDAFYGKGKS 188

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
               +V D   ++       +  L  ++         G     S+L   +    G+ R+ 
Sbjct: 189 FYTQKVDDALAEIDRLPGRHLYFLDDHLL--------GNPRFASELFDGMR---GMGRVF 237

Query: 265 YTTSHP-RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR-RHTAYEYRQIIDRI 322
            + +     ++  LI+   +    +  L L  ++ S   L+S N+ ++ + +Y   ++R+
Sbjct: 238 QSAATVASVLNGNLIEKAAEAG--LRSLFLGFETFSPENLRSSNKLQNLSKDYVAAVERL 295

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
             +   I I+  F+ G   +  D F  T+D   +     A     +P  GT
Sbjct: 296 HRL--GIMINGSFVFGLDHDDKDVFHRTVDWGIEHSITTATFHILTPYPGT 344


>gi|253581847|ref|ZP_04859071.1| glucosamine 6-phosphate N-acetyltransferase [Fusobacterium varium
           ATCC 27725]
 gi|251836196|gb|EES64733.1| glucosamine 6-phosphate N-acetyltransferase [Fusobacterium varium
           ATCC 27725]
          Length = 346

 Score = 63.0 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/218 (16%), Positives = 79/218 (36%), Gaps = 22/218 (10%)

Query: 185 GCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLID----NGVCEITLLGQNVNAWRGKGL 240
           GC   C FC      G E   ++  + +     ++    N   E+   G       G   
Sbjct: 14  GCPNACVFCNQKKINGRETDVTMEDLKETIETYLETLPKNSKKEVAFFGGTFT---GISF 70

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300
           D ++     +   + E  GL+     ++ P  ++  +++        +  + L VQS  +
Sbjct: 71  DLQRQYLETVHKYIKE--GLIDGIRLSTRPDCINREIVEQLKKYG--VTSVELGVQSLDE 126

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDD-DFRATMDLVDKIGY 359
           ++LK+  R +      +    ++    +I +    ++G P  T + DF +    + ++  
Sbjct: 127 KVLKATARYYPIEAVAKACSLLKEY--NIELGIQLMIGLPESTFESDFLSAKKAL-EMKP 183

Query: 360 AQAFSFKYSPRLGTPGSNMLE-------QVDENVKAER 390
             A  +      GT    M +        ++E VK  R
Sbjct: 184 DVARIYPTLVIKGTKMEEMFKVGEYKALDINEAVKRTR 221


>gi|86747815|ref|YP_484311.1| radical SAM family protein [Rhodopseudomonas palustris HaA2]
 gi|86570843|gb|ABD05400.1| Radical SAM [Rhodopseudomonas palustris HaA2]
          Length = 671

 Score = 63.0 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 65/367 (17%), Positives = 114/367 (31%), Gaps = 63/367 (17%)

Query: 92  NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVD 151
               +  GD+++ +  C    + +E   R+  V          R   L++R       ++
Sbjct: 243 EGARQMRGDVVIRLPSCEQVEQDKEAYARASRVLHRESNPGNARP--LVQRHGDRDLWLN 300

Query: 152 TDYSVEDKFERLSIVDGGYNRKRGVT-------------AFLTIQEGCDKFCTFCVVPYT 198
                    E  S+ D  Y R    +             A +TI  GC   CTFC +   
Sbjct: 301 PPPVPLTTAEMDSVYDLPYARAPHPSYGDAKIPAWDMIKASVTIMRGCFGGCTFCSITEH 360

Query: 199 RGIEI-SRSLSQVVDEARKLIDNGVCEITLL----GQNVNAWRGKGLDGE---------- 243
            G  I +RS   ++ E  K+ D       ++    G   N +R    D +          
Sbjct: 361 EGRIIQNRSEGSILREIEKIRDKTPGFTGVISDIGGPTANMYRMACNDPKIEAACRRPSC 420

Query: 244 ------------KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL--DVLMP 289
                             L   + E+KG+ R+   +    D++    +   +L    +  
Sbjct: 421 VFPEICPNLNTSHDDLIRLYRKVREVKGIKRVMVASGVRYDLAVKSPQYIKELVTHHVGG 480

Query: 290 YLHLPVQSGSDRILKSMNRR--HTAYEYRQIIDRIRS-VRPDIAISSDFIVGFPGETDDD 346
           YL +  +      L  M +    T + ++Q+ D           +   FI   PG TD+D
Sbjct: 481 YLKIAPEHTERGPLDKMMKPGIGTYHRFKQMFDAAAEQAGKKYYLIPYFIAAHPGTTDED 540

Query: 347 FRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML---------------EQVDENVKAERL 391
                  + K  Y       + P      + M                ++V E +K  R 
Sbjct: 541 MMNLALWLKKNRYRADQVQTFLPSPMATATAMYHTGVNPLRGVRRGGSDKV-EAIKGLRQ 599

Query: 392 LCLQKKL 398
             L K  
Sbjct: 600 RRLHKAF 606


>gi|26991480|ref|NP_746905.1| lipoyl synthase [Pseudomonas putida KT2440]
 gi|148549877|ref|YP_001269979.1| lipoyl synthase [Pseudomonas putida F1]
 gi|47117214|sp|Q88DM5|LIPA_PSEPK RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|166230432|sp|A5W9I5|LIPA_PSEP1 RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|24986559|gb|AAN70369.1|AE016679_1 lipoic acid synthetase [Pseudomonas putida KT2440]
 gi|148513935|gb|ABQ80795.1| lipoic acid synthetase [Pseudomonas putida F1]
 gi|313500779|gb|ADR62145.1| LipA [Pseudomonas putida BIRD-1]
          Length = 338

 Score = 63.0 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 35/214 (16%), Positives = 74/214 (34%), Gaps = 10/214 (4%)

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           + +    E  S  + G     G   F+ + + C + C FC V + R   +   L +  + 
Sbjct: 78  HKLHSVCEEASCPNLGECFSGGTATFMIMGDICTRRCPFCDVGHGRPKPL--DLDEPKNL 135

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
           A  + D  +  + +   +    R    DG    F+D +  +  +   V+L       R  
Sbjct: 136 AVAIADLRLKYVVITSVD----RDDLRDGGAQHFADCIREIRALSPGVQLETLVPDYRGR 191

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
            D  ++         P +         R+ K+            ++ + + + P +   S
Sbjct: 192 MDVALEITAQEP---PDVFNHNLETVPRLYKAARPGSDYDWSLDLLQKFKQLVPHVPTKS 248

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
             ++G  GETD++    M  + +         +Y
Sbjct: 249 GLMLGL-GETDEEVIEVMHRMREHDIDMLTLGQY 281


>gi|237710295|ref|ZP_04540776.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|229455757|gb|EEO61478.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
          Length = 625

 Score = 63.0 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 48/327 (14%), Positives = 103/327 (31%), Gaps = 66/327 (20%)

Query: 111 QAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGY 170
           +   ++  +++     +      Y    +L+       VV+  Y    + E     D  Y
Sbjct: 245 ETCLKDKKKQAENFRFIEEESNKYEASRILQDVGNKTVVVNPPYPPMTQGELDRSFDLPY 304

Query: 171 NR-------KRGVTAFLTI------QEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEAR- 215
            R        + + AF  I        GC   C FC +   +G   +SRS   ++ E + 
Sbjct: 305 TRMPHPKYKGKRIPAFDMIKFSVNLHRGCFGGCAFCTISAHQGKFIVSRSKESILKEVKA 364

Query: 216 --KLIDNGVCEITLLGQNVNAWRGKGLDGEKCT----------------------FSDLL 251
             ++ D       L G + N +  +G + + C                         D+ 
Sbjct: 365 ITEMPDFKGYLSDLGGPSANMYAMRGKEEKICRRCKRPSCIHPKVCPNLNTDHRPLLDIY 424

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL----------------HLPV 295
           +S+  + G+ +          +   L++       +                     +  
Sbjct: 425 HSVDALPGIKKSFIG----SGVRYDLLQYQSKDPAVNRSTAEYTRELIANHVSGRLKVAP 480

Query: 296 QSGSDRILKSMNRR-----HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
           +  SD +L+ M +      +   +    I++  ++R  I     FI   PG T++D    
Sbjct: 481 EHTSDPVLQIMRKPSFSQFYDFKKTFDKINKELNMRQQIIPY--FISSHPGCTEEDMAEL 538

Query: 351 MDLVDKIGYAQAFSFKYSPRLGTPGSN 377
             +  K+ +       ++P   T  + 
Sbjct: 539 AVITKKLDFHLEQVQDFTPTPMTVATE 565


>gi|229105590|ref|ZP_04236224.1| Lipoyl synthase [Bacillus cereus Rock3-28]
 gi|228677860|gb|EEL32103.1| Lipoyl synthase [Bacillus cereus Rock3-28]
          Length = 298

 Score = 63.0 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/214 (17%), Positives = 79/214 (36%), Gaps = 13/214 (6%)

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           ++V ++ +  +I +    RK     F+ +   C + C FC V      E+   L +    
Sbjct: 37  HTVCEEAKCPNIHECWAVRK--TATFMILGAVCTRACRFCAVKTGLPTEL--DLQEPERV 92

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
           A  ++  G+  + +        R    DG    F++ + ++        +    S    +
Sbjct: 93  ADSVVQMGLKHVVITAV----ARDDLKDGGAAVFAETVRAVRRKNPFTSIEVLPSDMAGV 148

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
            + L         ++ +    V+  S+R+      ++      + + R + ++PDI   S
Sbjct: 149 EENLKMLMDAKPDILNHNIETVRRLSNRV--RARAKYDRS--LEFLRRAKEMQPDIPTKS 204

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
             +VG  GET +D    MD +           +Y
Sbjct: 205 SIMVGL-GETREDLIEAMDDLRANNVDILTLGQY 237


>gi|261418885|ref|YP_003252567.1| coproporphyrinogen III oxidase [Geobacillus sp. Y412MC61]
 gi|319765702|ref|YP_004131203.1| coproporphyrinogen dehydrogenase [Geobacillus sp. Y412MC52]
 gi|261375342|gb|ACX78085.1| Coproporphyrinogen dehydrogenase [Geobacillus sp. Y412MC61]
 gi|317110568|gb|ADU93060.1| Coproporphyrinogen dehydrogenase [Geobacillus sp. Y412MC52]
          Length = 499

 Score = 63.0 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/247 (14%), Positives = 82/247 (33%), Gaps = 13/247 (5%)

Query: 129 GPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
           G        +L E        ++   ++ D+  +L++V   Y+    V+ ++ I   C  
Sbjct: 130 GLSKEEAHRKLAEEYLVTNEKIELMQAIVDR--QLTVVPDLYDLAHEVSIYIGIPF-CPT 186

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS 248
            C +C  P         S+   +      ++     +   G  +      G      T  
Sbjct: 187 KCAYCTFPAYAINGRQGSVDAFLAGLHYEMEAVGRFLRERGIRITTIYYGGGTPTSITAD 246

Query: 249 DLLYSLS-------EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
           ++    +       ++  +  +      P  ++   ++      +    + +  QS    
Sbjct: 247 EMDRLYAHMYDVFPDVDRVREITVEAGRPDTITPEKLEVLKKWRI--DRISINPQSYIQE 304

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
            LK++ R HT  E        R +  +  I+ D I+G PGE   +F  T+   +++    
Sbjct: 305 TLKAIGRHHTVEETIHKFHLARQMGMN-NINMDLIIGLPGEGLAEFTHTLAETERLMPES 363

Query: 362 AFSFKYS 368
                 S
Sbjct: 364 LTIHTLS 370


>gi|168185423|ref|ZP_02620058.1| biotin synthase [Clostridium botulinum C str. Eklund]
 gi|169296295|gb|EDS78428.1| biotin synthase [Clostridium botulinum C str. Eklund]
          Length = 348

 Score = 63.0 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/204 (15%), Positives = 73/204 (35%), Gaps = 30/204 (14%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIE-ISR-SLSQVVDEARKLIDNGVCEITLLGQNVNAWRG 237
           +     C   CT+C +          R SL  +++   +    G   + L G        
Sbjct: 56  IEFTNYCKNTCTYCGIRVFNKKVDRYRLSLEDILNCCSEGYKLGYRTVVLQG-------- 107

Query: 238 KGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP--- 294
               GE   F+D    + EI   ++ ++     +D +  L       +    Y       
Sbjct: 108 ----GEDPYFTD--DKIVEIVKNIKEKF-----KDCAVTLSIGEKSYESYKKYYDAGADR 156

Query: 295 ----VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
                ++ S  + + ++   +    R+ +  ++ +     + + F++G PG+T++DF   
Sbjct: 157 YLLRHETASKTLYEKLHPGMSFENRRRCLRDLKEI--GYQVGAGFMIGIPGQTNEDFVKD 214

Query: 351 MDLVDKIGYAQAFSFKYSPRLGTP 374
           +  + ++         + P+  TP
Sbjct: 215 LLFLKELEPHMVGIGPFIPQCDTP 238


>gi|147668973|ref|YP_001213791.1| radical SAM domain-containing protein [Dehalococcoides sp. BAV1]
 gi|146269921|gb|ABQ16913.1| Radical SAM domain protein [Dehalococcoides sp. BAV1]
          Length = 544

 Score = 63.0 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 50/313 (15%), Positives = 105/313 (33%), Gaps = 37/313 (11%)

Query: 116 EILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVD-------- 167
           E     P +  V+          +LER      +       E   ER+   +        
Sbjct: 166 EAEAILPELLAVLSETAGESKGLILERLAKIPGLYVPSIPPEQPIERVFPSELTQGVGTA 225

Query: 168 -GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEIT 226
                 + G    + ++ GC   C FC+V           L  ++ +A + +      I 
Sbjct: 226 VFSTATELGEMYLMEVERGCGHQCRFCLVAGVFCPLRYHPLELLLKQAEEGMLK-RKRIG 284

Query: 227 LLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV 286
           L+G  V+         +    ++L+  L  +     L  ++   + +S+ ++        
Sbjct: 285 LVGPVVS---------DHPQVTELVSRLRNMG--FGLSVSSLRIKPLSEKMLDELALSG- 332

Query: 287 LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA-ISSDFIVGFPGETDD 345
            +  L +  ++GS+R+ + + +  T  +  +    +         +   F++G PGE D+
Sbjct: 333 -VSSLAMAPEAGSERLRRIIRKGITEDDIIRAAALVAEK--GFRQLKFYFMLGLPGEADE 389

Query: 346 DFRATMDLVDKIGYA----------QAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQ 395
           D    + L +K   A                + P+  TP    L   D  +   RL  ++
Sbjct: 390 DVEEMIVLAEKAQQAMSSKGRGVRLSLNIAPFVPKPATP-FQWLGMEDAALIKRRLDTIR 448

Query: 396 KKLREQQVSFNDA 408
            +L  Q +     
Sbjct: 449 LRLEGQGIEVRAE 461


>gi|167041834|gb|ABZ06575.1| putative Radical SAM superfamily protein [uncultured marine
           microorganism HF4000_097M14]
          Length = 533

 Score = 62.7 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 43/214 (20%), Positives = 83/214 (38%), Gaps = 25/214 (11%)

Query: 183 QEGCDKFCTFC-VVPY-----TRGIEISRSLSQVVDEARKLIDNG--VCEITLLGQNVNA 234
             GC   CT+C    +             S   +++E ++       +  +     +  A
Sbjct: 219 SIGCPLHCTYCGNTKFIEYDNAYRRLRHSSPRTIIEEIKRTKSKHPYLSTVIFHDDSFMA 278

Query: 235 WRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP 294
            R + L+     F  L  +  +I   +     T    D    L+ A       M  + + 
Sbjct: 279 LRYEVLEE----FCKLWKAEIKIPFAIYGLIPTYVREDKIALLVDA------GMNRVRMG 328

Query: 295 VQSGSDRILKSMNRR---HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351
           +QSGS+ IL+   R    +   +  +II++ R     I  + D I+  P ET +D RAT+
Sbjct: 329 IQSGSNNILEFYKRPTKLYRIKKATEIINKFRKYM--IPPAYDIILENPIETPEDTRATV 386

Query: 352 DLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
           DL+ ++   + F+         P + + + V++ 
Sbjct: 387 DLIYEMP--RPFTLNIYALRIIPNTQLAKDVEKR 418


>gi|127513870|ref|YP_001095067.1| lipoyl synthase [Shewanella loihica PV-4]
 gi|166230439|sp|A3QH60|LIPA_SHELP RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|126639165|gb|ABO24808.1| lipoic acid synthetase [Shewanella loihica PV-4]
          Length = 321

 Score = 62.7 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/246 (15%), Positives = 80/246 (32%), Gaps = 21/246 (8%)

Query: 131 QTYYRLPELL--ERARFGKRVVDTDYSV-----EDKFERLSIVDGGYNRKRGVTAFLTIQ 183
           +T  R P+ L  +     +R+VD   ++         E  S  +       G   F+ + 
Sbjct: 32  ETMLRKPDWLRVKLPASNQRIVDIKQALRKNGLHSVCEEASCPNLAECFNHGTATFMILG 91

Query: 184 EGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
             C + C FC V    G  +     + V  A+ + D  +  + +   +    R    DG 
Sbjct: 92  AICTRRCPFCDV--AHGRPLKPDAEEPVKLAQTIRDMKLKYVVITSVD----RDDLRDGG 145

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLD--VLMPYLHLPVQSGSDR 301
              F+D +  + ++   +++       R   D  ++        V    L    +     
Sbjct: 146 AQHFADCIREIRKLNPEIKIEILVPDFRGRIDAALEILATEPPDVFNHNLETAPKHY--- 202

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
             +             ++ + +   P I   S  ++G  GET+++    +  +       
Sbjct: 203 --RKARPGANYQWSLDLLKKFKEQHPHIPTKSGLMMGL-GETNEEIAEVLRDLRAHNVEM 259

Query: 362 AFSFKY 367
               +Y
Sbjct: 260 LTLGQY 265


>gi|78356406|ref|YP_387855.1| Elongator protein 3/MiaB/NifB [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78218811|gb|ABB38160.1| Elongator protein 3/MiaB/NifB [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 646

 Score = 62.7 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 47/267 (17%), Positives = 89/267 (33%), Gaps = 29/267 (10%)

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
               G+  +D  YS+                   +   +T   GC   C+FC +   +G 
Sbjct: 293 AHPLGEEEMDRLYSLPFARTAHPAYTSPIPATDMMLTSVTTHRGCGGGCSFCSLALHQGR 352

Query: 202 EI-SRSLSQVVDEARKLIDNGVCEITLL---GQNVNAWR--------------------G 237
            I SRS   V++E R +      + T+    G + N W+                     
Sbjct: 353 RIASRSRKSVIEEVRAMTRRADWKGTISDVGGPSANMWQAACAADPARCRRESCMHPSVC 412

Query: 238 KGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMP--YLHLPV 295
           K    ++    DLL ++  +  +  +R  +    D++     A     +      L +  
Sbjct: 413 KAFKAQQPAAIDLLRTIRGMDKVRHVRVASGVRYDLALKDDTALRAYTMEFTGGQLKVAP 472

Query: 296 QSGSDRILKSMNRRH--TAYEYRQIIDRI-RSVRPDIAISSDFIVGFPGETDDDFRATMD 352
           +   D +L+ M +        + +  +   R    +  +    +  FPG TDDD R    
Sbjct: 473 EHICDNVLERMRKPGLPAFEAFLEAFETFSREAGKEQYVIPYLMSAFPGCTDDDMRTLGR 532

Query: 353 LVDKIGYAQAFSFKYSPRLGTPGSNML 379
            + + G+       + P  GT  + M 
Sbjct: 533 WLRQRGWQPQQVQCFIPTPGTVATAMY 559


>gi|318040429|ref|ZP_07972385.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Synechococcus sp. CB0101]
          Length = 435

 Score = 62.7 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 43/235 (18%), Positives = 84/235 (35%), Gaps = 32/235 (13%)

Query: 186 CDKFCTFCVVPYT---------RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR 236
           C + C +C  P            G   S S++  +++ ++ I      +   G  ++   
Sbjct: 45  CHRRCFYCDFPVVPLGDRASAEAGAPGSASIAHYLEQLQREIA-----LAPTGPPLSTVY 99

Query: 237 GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY------ 290
             G      +   L   L+ +    R R+  +   ++S  L  A  D   L  Y      
Sbjct: 100 VGGGTPSLLSAEQLRGLLAAL----RRRFGLAPGAEVSLELDPASFDQQRLSGYLAAGVT 155

Query: 291 -LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS---DFIVGFPGETDDD 346
            + L  QS SD +L+ + RRH + +  +    +R  + +  + S   D I G PG+    
Sbjct: 156 RVSLGGQSFSDAVLEQLGRRHRSADLLEAAGWLRQAQANGRLQSWSLDLIQGLPGQNLAG 215

Query: 347 FRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ----VDENVKAERLLCLQKK 397
           ++  +     +       +      GT    M  +    + E+  A  L+ L  +
Sbjct: 216 WQEQLHQAIALRPPHLSVYDLIVEPGTVFERMERRGTLALPESDLAADLMELTAR 270


>gi|302338580|ref|YP_003803786.1| radical SAM protein [Spirochaeta smaragdinae DSM 11293]
 gi|301635765|gb|ADK81192.1| Radical SAM domain protein [Spirochaeta smaragdinae DSM 11293]
          Length = 845

 Score = 62.7 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 43/236 (18%), Positives = 85/236 (36%), Gaps = 22/236 (9%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLID-NGVCEITLLGQNVNAWRGK 238
           + I  GC   C FC   Y    +  + L  +++E   L+   G  EITL   +       
Sbjct: 246 VEIMRGCPNGCRFCHAGYFYRQKREKPLEHILEEVEFLVRCAGYREITLSSLSS------ 299

Query: 239 GLDGEKCTFSDLLYSLSE--IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQ 296
              G+      L+  L++      V     +      +  L++    +      L   ++
Sbjct: 300 ---GDYSHIHQLITLLNQRYASDGVSFSLPSLKVNSFTLPLLQEISRVRK--SGLTFAIE 354

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFP-GETDDDFRATMDLVD 355
              D   K++N+     +   I+   +     +A    F++G P G  +++     D ++
Sbjct: 355 VPGDNAQKTINKSVPIEQVIDILRTAKQSGWRLAKF-YFMIGLPIGNAENEVDLIGDYIE 413

Query: 356 KIGYA-----QAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFN 406
           +I  +           + P+  TP      Q+ E   +E+L  L+ + R   V  N
Sbjct: 414 EIQQSVRMPINVNVGTFIPKPHTP-FQWSRQLHEEEASEKLQRLKGRFRRGPVKLN 468


>gi|302817030|ref|XP_002990192.1| hypothetical protein SELMODRAFT_428637 [Selaginella moellendorffii]
 gi|300142047|gb|EFJ08752.1| hypothetical protein SELMODRAFT_428637 [Selaginella moellendorffii]
          Length = 135

 Score = 62.7 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/163 (17%), Positives = 51/163 (31%), Gaps = 35/163 (21%)

Query: 55  RVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG 114
             +S   ADL ++NTC ++    E +          K + I                   
Sbjct: 3   ISDSPQRADLWLINTCTLKAPTMETLIC------KGKAASI------------------- 37

Query: 115 EEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKF---ERLSIVDGGYN 171
                  P+V+  +    + R               +T    E      + L  +D    
Sbjct: 38  -------PLVDSWMRSSGFKRSRSHQRHRSAANTAGETLKGHEAWLLQRDALPSLDLPKV 90

Query: 172 RKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEA 214
           RK      + I  GC   CT+C + + RG   S ++  +++  
Sbjct: 91  RKNKFVEIIPINVGCLGACTYCKMKHARGHLGSYTVDALIENC 133


>gi|170719807|ref|YP_001747495.1| lipoyl synthase [Pseudomonas putida W619]
 gi|229830545|sp|B1J144|LIPA_PSEPW RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|169757810|gb|ACA71126.1| lipoic acid synthetase [Pseudomonas putida W619]
          Length = 338

 Score = 62.7 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 34/214 (15%), Positives = 74/214 (34%), Gaps = 10/214 (4%)

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           + +    E  S  + G     G   F+ + + C + C FC V + R   +   + +  + 
Sbjct: 78  HKLHSVCEEASCPNLGECFSGGTATFMIMGDICTRRCPFCDVGHGRPKPL--DVDEPKNL 135

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
           A  + D  +  + +   +    R    DG    F+D +  +  +   V+L       R  
Sbjct: 136 AVAIADLRLKYVVITSVD----RDDLRDGGAQHFADCIREIRALSPGVQLETLVPDYRGR 191

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
            D  ++         P +         R+ K+            ++ + + + P +   S
Sbjct: 192 MDVALEITAQEP---PDVFNHNLETVPRLYKAARPGSDYDWSLDLLQKFKQMVPHVPTKS 248

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
             ++G  GETD++    M  + +         +Y
Sbjct: 249 GLMLGL-GETDEEVIEVMHRMREHDIDMLTLGQY 281


>gi|317052276|ref|YP_004113392.1| hypothetical protein Selin_2116 [Desulfurispirillum indicum S5]
 gi|316947360|gb|ADU66836.1| Protein of unknown function DUF2344 [Desulfurispirillum indicum S5]
          Length = 838

 Score = 62.7 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 50/277 (18%), Positives = 94/277 (33%), Gaps = 29/277 (10%)

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           V D + +  D    +  ++  +NR     A + I  GC + C FC           RS  
Sbjct: 235 VTDLEEAPYDTRPVVPYMETVHNR-----AVVEISRGCTRGCRFCQAGMIYRPVRDRSPQ 289

Query: 209 QVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
            + + AR  +D  G  E++LL  +   ++            DL+         V +   +
Sbjct: 290 AIAELARCTLDASGFDELSLLSLSATDYQHIS-----PLLRDLMLEYGRSG--VSVSLPS 342

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
                +SD L+     +        +  ++G+ R+   +N+     +       I     
Sbjct: 343 LRAGTLSDALLDELRKVRK--SSFTIAPEAGTQRMRDVINKGIDEEDILATARIIFQAGW 400

Query: 328 DIAISSDFIVGFPGETDDDFRATMDL-VDKIGYAQ----------AFSFKYSPRLGTP-- 374
              +   F++G P ET +D      L V     A+              ++ P+  TP  
Sbjct: 401 K-RVKLYFMIGLPLETTEDVAGIAHLAVKIQQIAREAAGRSAQVIVSVSQFIPKAHTPFQ 459

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVG 411
              M ++     K   +  + +     Q  F+DA  G
Sbjct: 460 WWTMDDRETLKAKQRVIEDILRPYSTVQYKFHDARTG 496


>gi|197334692|ref|YP_002155504.1| lipoyl synthase [Vibrio fischeri MJ11]
 gi|226781800|sp|B5FBJ6|LIPA_VIBFM RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|197316182|gb|ACH65629.1| lipoyl synthase [Vibrio fischeri MJ11]
          Length = 321

 Score = 62.7 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/211 (15%), Positives = 71/211 (33%), Gaps = 12/211 (5%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V    G  ++    +    A+ + D  +  + +   +    R    DG   
Sbjct: 94  CTRRCPFCDV--AHGRPVAPEAEEPKKLAKTIQDMKLKYVVITSVD----RDDLRDGGAQ 147

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
            F+D    +  +   +R+       R   D  ++A  D     P +       + R+ + 
Sbjct: 148 HFADCNREIRALNPEIRIETLVPDFRGRMDRALEAMIDNP---PDVFNHNLETAPRLYRK 204

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           +           ++ + +   P++   S  ++G  GET ++    +  +   G       
Sbjct: 205 VRPGANYQWSLDLLKKFKDQHPNVPTKSGLMMGL-GETKEEIVEVLKDLRAHGVTMLTLG 263

Query: 366 KYSP--RLGTPGSNMLEQVDENVKAERLLCL 394
           +Y    R   P    +   + +   E  L L
Sbjct: 264 QYLAPSRHHLPVERYVPPAEFDELKEIALEL 294


>gi|265751102|ref|ZP_06087165.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|263237998|gb|EEZ23448.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 609

 Score = 62.7 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 48/327 (14%), Positives = 103/327 (31%), Gaps = 66/327 (20%)

Query: 111 QAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGY 170
           +   ++  +++     +      Y    +L+       VV+  Y    + E     D  Y
Sbjct: 229 ETCLKDKKKQAENFRFIEEESNKYEASRILQDVGNKTVVVNPPYPPMTQGELDRSFDLPY 288

Query: 171 NR-------KRGVTAFLTI------QEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEAR- 215
            R        + + AF  I        GC   C FC +   +G   +SRS   ++ E + 
Sbjct: 289 TRMPHPKYKGKRIPAFDMIKFSVNLHRGCFGGCAFCTISAHQGKFIVSRSKESILKEVKA 348

Query: 216 --KLIDNGVCEITLLGQNVNAWRGKGLDGEKCT----------------------FSDLL 251
             ++ D       L G + N +  +G + + C                         D+ 
Sbjct: 349 ITEMPDFKGYLSDLGGPSANMYAMRGKEEKICRRCKRPSCIHPKVCPNLNTDHRPLLDIY 408

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL----------------HLPV 295
           +S+  + G+ +          +   L++       +                     +  
Sbjct: 409 HSVDALPGIKKSFIG----SGVRYDLLQYQSKDPAVNRSTAEYTRELIANHVSGRLKVAP 464

Query: 296 QSGSDRILKSMNRR-----HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
           +  SD +L+ M +      +   +    I++  ++R  I     FI   PG T++D    
Sbjct: 465 EHTSDPVLQIMRKPSFSQFYDFKKTFDKINKELNMRQQIIPY--FISSHPGCTEEDMAEL 522

Query: 351 MDLVDKIGYAQAFSFKYSPRLGTPGSN 377
             +  K+ +       ++P   T  + 
Sbjct: 523 AVITKKLDFHLEQVQDFTPTPMTVATE 549


>gi|239979389|ref|ZP_04701913.1| coproporphyrinogen III oxidase [Streptomyces albus J1074]
 gi|291451264|ref|ZP_06590654.1| coproporphyrinogen III oxidase [Streptomyces albus J1074]
 gi|291354213|gb|EFE81115.1| coproporphyrinogen III oxidase [Streptomyces albus J1074]
          Length = 413

 Score = 62.7 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 50/238 (21%), Positives = 85/238 (35%), Gaps = 19/238 (7%)

Query: 186 CDKFCTFCVV-PYTRGIEISRSLSQVVDEARKLIDNGVCEITL----LGQNVNAWRGKGL 240
           C   C +C    YT     S     V+       D    E+ L    LG +    R   +
Sbjct: 42  CATRCGYCDFNTYTATELRS--SGGVLASRDNYADTLADEVRLARKVLGDDPREVRTVFV 99

Query: 241 DGEKCTF---SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKA--HGDLDVL-MPYLHLP 294
            G   T     DL+  L  ++    L        + +   +      +L       +   
Sbjct: 100 GGGTPTLLAARDLVRMLDAVRSEFGLAPDAEITTEANPESVDPAYLAELREGGFNRISFG 159

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           +QS    +LK ++RRHT       +   R+   D  ++ D I G PGE+DDD+RA++   
Sbjct: 160 MQSARQHVLKVLDRRHTPGRPEACVAEARAAGFD-HVNLDLIYGTPGESDDDWRASLSAA 218

Query: 355 DKIGYAQAFSFKYSPRLGTPGSNMLEQ-----VDENVKAERLLCLQKKLREQQVSFND 407
              G     ++      GT  +  + +      D++  A+R L     L E    + +
Sbjct: 219 VGAGPDHVSAYALIVEEGTGLARRIRRGEVAPTDDDEHADRYLIADTMLAEAGYHWYE 276


>gi|226939900|ref|YP_002794973.1| lipoyl synthase [Laribacter hongkongensis HLHK9]
 gi|254809192|sp|C1D5T3|LIPA_LARHH RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|226714826|gb|ACO73964.1| LipA [Laribacter hongkongensis HLHK9]
          Length = 315

 Score = 62.7 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 45/263 (17%), Positives = 89/263 (33%), Gaps = 20/263 (7%)

Query: 112 AEGEEILRRSPIVNVVVGPQTYYRLPELL-ERARFGKRVVDT-----DYSVEDKFERLSI 165
            +GE    R PI   VV  +   R PE +  +   G+R  +      +  +    E  S 
Sbjct: 11  HKGEAKTARIPI--KVVPLEEKLRKPEWIRAKLPTGQRFFEIKEILRNQKLHTVCEEASC 68

Query: 166 VDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEI 225
            + G     G   F+ + + C + C FC V + R   +    ++    A  +    +  +
Sbjct: 69  PNIGECFSHGTATFMIMGDICTRRCPFCDVGHGRPNPL--DPNEPQHLAESVAAMRLKYV 126

Query: 226 TLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAH-GDL 284
            +   +    R    DG    F+D + ++       R+       R   +  +       
Sbjct: 127 VITSVD----RDDLRDGGAQHFADCIQAIRASSPATRIEVLVPDFRGRLELALDILSATP 182

Query: 285 DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETD 344
             +M +        + R+ K            Q++   ++  PD+   S  +VG  GETD
Sbjct: 183 PDVMNHNL----ETAPRLYKQARPGADYAHSLQLLKDYKTRNPDVTTKSGIMVGL-GETD 237

Query: 345 DDFRATMDLVDKIGYAQAFSFKY 367
           ++    +  +           +Y
Sbjct: 238 EEVLEVLADLRAHDVDMLTIGQY 260


>gi|29345664|ref|NP_809167.1| hypothetical protein BT_0254 [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|47606165|sp|Q8AB57|Y254_BACTN RecName: Full=UPF0313 protein BT_0254
 gi|29337556|gb|AAO75361.1| putative Fe-S oxidoreductase [Bacteroides thetaiotaomicron
           VPI-5482]
          Length = 620

 Score = 62.7 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 47/271 (17%), Positives = 91/271 (33%), Gaps = 44/271 (16%)

Query: 151 DTDYSVEDKFERLSIVDGGYNR---KRGVTAFLTIQEGCDKFCTFCVVPYTRGIE-ISRS 206
           + D+S +  + RL        R      +   + I  GC   C FC +   +G   +SRS
Sbjct: 287 ELDHSYDLPYTRLPHPKYKGKRIPAYDMIKFSVNIHRGCFGGCAFCTISAHQGKFIVSRS 346

Query: 207 LSQVVDEARKLI---DNGVCEITLLGQNVNAWRGKGLD---------------------- 241
              +++E ++++   D       L G + N ++ KG D                      
Sbjct: 347 KKSILNEVKEVMQLPDFKGYLSDLGGPSANMYQMKGKDEAICKKCKRPSCIHPKVCPNLN 406

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL---------- 291
            + C   D+  ++  I G+ +    +    D+     K          Y           
Sbjct: 407 SDHCPLLDIYKAVDAIPGIKKSFIGSGVRYDLLLHQSKDAATNRSTAEYTRELIVNHVSG 466

Query: 292 --HLPVQSGSDRILKSMNRRH--TAYEYRQIIDRI-RSVRPDIAISSDFIVGFPGETDDD 346
              +  +  SDR+L  M +        +++I DRI R       +   FI   PG  ++D
Sbjct: 467 RLKVAPEHTSDRVLSIMRKPSFEQFETFKKIFDRINREENLRQQLIPYFISSHPGCKEED 526

Query: 347 FRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
                 +  ++ +       ++P   T  + 
Sbjct: 527 MAELAVITKRLDFHLEQVQDFTPTPMTVATE 557


>gi|258511724|ref|YP_003185158.1| lipoyl synthase [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|257478450|gb|ACV58769.1| lipoic acid synthetase [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 308

 Score = 62.7 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 49/254 (19%), Positives = 91/254 (35%), Gaps = 20/254 (7%)

Query: 122 PIVNV-VVGPQTYYRLPELLE-RARFGK-----RVVDTDYSVEDKFERLSIVDGGYNRKR 174
           P  +V V+   T    PE L+ RA+ G+     + +    S+    E     +     + 
Sbjct: 4   PEASVRVMEAGTTKARPEWLKIRAKTGENYKQLKEIMRTQSLHTVCEEAHCPNLFECWEM 63

Query: 175 GVTAFLTIQEGCDKFCTFCVVPYTRGIEIS-RSLSQVVDEARKLIDNGVCEITLLGQNVN 233
               F+ + + C + C FC V   R  E+  R   +V D     +  G+  + +      
Sbjct: 64  RTATFMILGDICTRACRFCAVHTGRPNELDLREPERVADAV---VAMGLEHVVITSV--- 117

Query: 234 AWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHL 293
             R    DG    F++ + ++        +           D L         ++ +   
Sbjct: 118 -ARDDLADGGASVFAETIRAVRRKVPTCSVEVLIPDFDGNWDALAAVLDARPDVLNHNIE 176

Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
            V+  SD    S+  R       +++ R + + PDI   S  +VG  GET ++   TMD 
Sbjct: 177 TVRRLSD----SVRSRAKYDRTLELLRRSKEMAPDIPTKSSIMVGL-GETFEEIYETMDD 231

Query: 354 VDKIGYAQAFSFKY 367
           +  +        +Y
Sbjct: 232 LRAVDVDILTIGQY 245


>gi|118580654|ref|YP_901904.1| lipoyl synthase [Pelobacter propionicus DSM 2379]
 gi|118503364|gb|ABK99846.1| lipoic acid synthetase [Pelobacter propionicus DSM 2379]
          Length = 280

 Score = 62.7 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/227 (14%), Positives = 70/227 (30%), Gaps = 17/227 (7%)

Query: 172 RKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQN 231
             R    FL + + C + C+FC V      E+     +    A+ +   G+  + +    
Sbjct: 47  FARNQATFLILGKNCTRHCSFCNVDSCEPEEV--DQEEPQRVAQAVARLGLSHVVITSPT 104

Query: 232 VNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL 291
               R    DG    F+  + ++  +    R+             L +       +    
Sbjct: 105 ----RDDLDDGGASLFAQTVRAIRAVTPSTRIELLIPDFLGDIPSLDRVIASAPDI---- 156

Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351
            L     +   L  +          +++       P I + S  ++G  GE + +     
Sbjct: 157 -LAHNLETVPRLYHIRAGADYNRSLELLRHCGETAPAIRLKSGIMLGL-GEKEQEILELF 214

Query: 352 DLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKL 398
             + ++G       +Y        S     V E +  +R   L+++ 
Sbjct: 215 RDLREVGCVYLSIGQY-----LAPSKRHHPVREYIHPDRFEYLREQA 256


>gi|56419177|ref|YP_146495.1| coproporphyrinogen III oxidase [Geobacillus kaustophilus HTA426]
 gi|56379019|dbj|BAD74927.1| Fe-S oxidoreductase [Geobacillus kaustophilus HTA426]
          Length = 499

 Score = 62.7 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/247 (14%), Positives = 82/247 (33%), Gaps = 13/247 (5%)

Query: 129 GPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
           G        +L E        ++   ++ D+  +L++V   Y+    V+ ++ I   C  
Sbjct: 130 GLSKEEAHRKLAEEYLVTNEKIELMQAIVDR--QLTVVPDLYDLAHEVSIYIGIPF-CPT 186

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS 248
            C +C  P         S+   +      ++     +   G  +      G      T  
Sbjct: 187 KCAYCTFPAYAINGRQGSVDAFLAGLHYEMEAVGRFLRERGIRITTIYYGGGTPTSITAD 246

Query: 249 DLLYSLS-------EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
           ++    +       ++  +  +      P  ++   ++      +    + +  QS    
Sbjct: 247 EMDRLYAHMYDVFPDVDRVREITVEAGRPDTITPEKLEVLKKWRI--DRISINPQSYIQE 304

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
            LK++ R HT  E        R +  +  I+ D I+G PGE   +F  T+   +++    
Sbjct: 305 TLKAIGRHHTVEETIHKFHLARQMGMN-NINMDLIIGLPGEGLAEFTHTLAETERLMPES 363

Query: 362 AFSFKYS 368
                 S
Sbjct: 364 LTIHTLS 370


>gi|313899453|ref|ZP_07832963.1| radical SAM domain protein [Clostridium sp. HGF2]
 gi|312955741|gb|EFR37399.1| radical SAM domain protein [Clostridium sp. HGF2]
          Length = 557

 Score = 62.7 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 55/303 (18%), Positives = 111/303 (36%), Gaps = 38/303 (12%)

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVV---VGPQTYYRLPELL 140
           +  IR +     ++  +L ++V G   +   E        V+ +    G Q+ +    +L
Sbjct: 68  IQLIRRVIVLLKQQNSNLHILVGG--PEVSYESYDLLDEGVDAISIGEGEQSVWEYITML 125

Query: 141 ERARF-------GKRVVDTDYSVED-----KFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
           E A+         K+  +T+Y   D     +FE    ++           +L    GC  
Sbjct: 126 EEAKAYPVSGIYTKQYPNTEYRKTDLAWLERFEAPYFMEMDEAGMDRQYFYLETSRGCPY 185

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS 248
            CT+C+    R      S+  ++    KL D+ V ++ LL +  NA   + L   +    
Sbjct: 186 GCTYCLSSADR-AVRMFSMEYIMRILHKLKDSRVTQVKLLDRTFNADPKRALQIARYMNE 244

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY-LHLPVQSGSDRILKSMN 307
              + + + +              +S+ L++   +  V   +   + VQS   R L ++ 
Sbjct: 245 YCTHQIFQFE---------IVAETLSEELLQFFCEEAVPGRFRFEIGVQSFHTRTLHAVG 295

Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           R        ++I R+++      +  D I G P E  + F+        + +   FS + 
Sbjct: 296 RTQNNERLIEVIQRLKAS--GAVMHVDLIAGLPYEDLNLFQ--------VSFDTLFSLQA 345

Query: 368 SPR 370
           S  
Sbjct: 346 SEL 348


>gi|253578283|ref|ZP_04855555.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251850601|gb|EES78559.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 395

 Score = 62.7 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 40/248 (16%), Positives = 80/248 (32%), Gaps = 40/248 (16%)

Query: 173 KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNV 232
           + G + ++ I   C   C +C          S  L        + ++    E+      +
Sbjct: 72  ENGYSLYIGIPF-CPSICLYCSFS-------SYPLKVWEKRTDEYVEALCREVRETALMM 123

Query: 233 NAWRGKGLD-GEKCTFSDLLYSLSEI----------KGLVRLRYTTSHPRDMSDCLIKAH 281
              +   +  G     + L + + ++          +GL         P  ++   + A 
Sbjct: 124 KGRKLDTIYIGGGTPTTLLPHQIRKLLDTVGEAFGYEGLAEFTVEAGRPDSITREKLMAI 183

Query: 282 GDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPG 341
            +    +  + +  Q+ +   L  + RRHT  + ++     R +  D  I+ D IVG PG
Sbjct: 184 REYP--VTRISVNPQTMNQETLDIIGRRHTVEQTKEAFHLARELGYD-NINMDLIVGLPG 240

Query: 342 ETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK-AERLLCLQKKLRE 400
           E       T++ V ++                            VK A RL   ++K +E
Sbjct: 241 EDIHMVERTLEQVRELAPDSITVH-----------------SLAVKRAARLNIFKEKYQE 283

Query: 401 QQVSFNDA 408
                N  
Sbjct: 284 MSFENNQE 291


>gi|126458927|ref|YP_001055205.1| radical SAM domain-containing protein [Pyrobaculum calidifontis JCM
           11548]
 gi|126248648|gb|ABO07739.1| Radical SAM domain protein [Pyrobaculum calidifontis JCM 11548]
          Length = 483

 Score = 62.7 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 55/332 (16%), Positives = 110/332 (33%), Gaps = 41/332 (12%)

Query: 92  NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVD 151
               +      VVV G    A  E +     + +++V  +      ++++    G RV  
Sbjct: 91  EPWARARERPKVVVGGPPVTANPEPLA---DLADLIVLGELEAVWDKVVQYLATGDRVEG 147

Query: 152 TD--YSVEDKFE-----RLSIVDGGYNRKRGVTA----FLTIQEGCDKFCTFCVVPYTRG 200
               Y  +  +E        + +  Y R     A     + +  GC   C FC+  Y   
Sbjct: 148 AGMYYPADGPYEVAVAYAKDVEEADYRRLPEPEAAFSLSVELARGCPFSCLFCMESYIAK 207

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
               R   + ++EA  L        +L+    NA       G K   S+           
Sbjct: 208 PYRPRGWEKALEEAELLYKRYGVRPSLVALTANAH-----PGFKELLSEAARR------W 256

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
           V L   +     + D  ++    L      L +  ++ S+R+ K++ +  +  +  ++  
Sbjct: 257 VPLSLPSLRAELLDDEALELVAKLGQ--KTLTIAPET-SERLRKALGKEVSDADVLKVAK 313

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK-IGYAQAF--SFKYSPRLGTPGSN 377
           R   +   + +    +VG P E + D  A   LV +   YA+ +     + P+  TP   
Sbjct: 314 RAGEL--GMKLKMYLMVGLPCEREKDLEAVKALVKEAARYAKLYLSVNPFIPKPQTPLQY 371

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDAC 409
              +            L++K+   +       
Sbjct: 372 HPMEEP--------QALEEKIESIREVHRGEF 395


>gi|148263125|ref|YP_001229831.1| radical SAM domain-containing protein [Geobacter uraniireducens
           Rf4]
 gi|146396625|gb|ABQ25258.1| Radical SAM N-terminal domain protein [Geobacter uraniireducens
           Rf4]
          Length = 605

 Score = 62.7 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 55/308 (17%), Positives = 96/308 (31%), Gaps = 46/308 (14%)

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI-EISR 205
           ++ +D  Y++                   + A +T   GC   C FC + Y +G    SR
Sbjct: 266 EQTMDIIYALPFVKAPHPSYTEQIPAHEQIKASITTHRGCFGGCAFCAITYHQGKTIQSR 325

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQ-----------------NVNAWRGKGLDGEKCTFS 248
           S S V+ E +KL++    + ++                      +  RG  L    C   
Sbjct: 326 SESSVLLEIKKLLEQKWFKGSISDIGGPTANMYGLKCSDSKAEASCRRGSCLYPRPCRNL 385

Query: 249 DLL-YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY---------LHLPVQSG 298
           D+    ++ +   VR      H    S          D  +           L +  +  
Sbjct: 386 DMSDKRVAALLSKVRKTSGVKHSAVSSGVRYDLLKHQDAYLKELLGYHVGGLLKVAPEHI 445

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSD----FIVGFPGETDDDFRATMDLV 354
           ++R+   M +      + Q + + R     +         FI G PG T  D       +
Sbjct: 446 AERVTDLMRKPGRRD-FEQFLAQFRKESAALGKKQHVVPYFISGHPGTTLSDMVDLALFL 504

Query: 355 DKIGYAQAFSFKYSPRLGT-----------PGSNMLEQVDENVKAERLLC--LQKKLREQ 401
            + G        ++P  GT           P S     V  + K +RL    L   L E+
Sbjct: 505 KRSGLRVEQVQDFTPTPGTLSTCIYYTGIDPFSGNEVYVPRSDKEKRLQKSLLLSHLAEE 564

Query: 402 QVSFNDAC 409
           + +   A 
Sbjct: 565 RSNIMRAL 572


>gi|294808316|ref|ZP_06767073.1| radical SAM domain protein [Bacteroides xylanisolvens SD CC 1b]
 gi|294444478|gb|EFG13188.1| radical SAM domain protein [Bacteroides xylanisolvens SD CC 1b]
          Length = 629

 Score = 62.7 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 46/271 (16%), Positives = 95/271 (35%), Gaps = 44/271 (16%)

Query: 151 DTDYSVEDKFERLSIVDGGYNR---KRGVTAFLTIQEGCDKFCTFCVVPYTRGIE-ISRS 206
           D D S +  + RL        R      +   + I  GC   C FC +   +G   +SRS
Sbjct: 298 DLDRSFDLPYTRLPHPKYKGKRIPAYDMIKFSINIHRGCFGGCAFCTISAHQGKFIVSRS 357

Query: 207 LSQVVDEARKLI---DNGVCEITLLGQNVNAWRGKGLDGEKCT----------------- 246
              ++ E +++I   D       L G + N ++ KG D   C                  
Sbjct: 358 KESILKEVKEVIQLPDFKGYLSDLGGPSANMYQMKGKDEAICKKCKRPSCIHPKVCPNLN 417

Query: 247 -----FSDLLYSLSEIKGLVRLRYTTSHPRDM------SDCLIKAHGDLDV--LMPYLH- 292
                  D+  ++  + G+ +    +    D+       + + ++  +     ++ ++  
Sbjct: 418 TDHRPLLDIYRAVDALPGIKKSFIGSGVRYDLLLHQSKDEAINRSTAEYTRELIVNHVSG 477

Query: 293 ---LPVQSGSDRILKSMNRRH--TAYEYRQIIDRI-RSVRPDIAISSDFIVGFPGETDDD 346
              +  +  SDR+L  M +        +++I DRI R       +   FI   PG  ++D
Sbjct: 478 RLKVAPEHTSDRVLSVMRKPSFEQFETFKRIFDRINREENLRQQLIPYFISSHPGCKEED 537

Query: 347 FRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
                 +  ++ +       ++P   T  + 
Sbjct: 538 MAELAVITKRLDFHLEQVQDFTPTPMTVATE 568


>gi|237715947|ref|ZP_04546428.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262407558|ref|ZP_06084106.1| UPF0313 protein [Bacteroides sp. 2_1_22]
 gi|294643126|ref|ZP_06720958.1| radical SAM domain protein [Bacteroides ovatus SD CC 2a]
 gi|229443594|gb|EEO49385.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262354366|gb|EEZ03458.1| UPF0313 protein [Bacteroides sp. 2_1_22]
 gi|292641534|gb|EFF59720.1| radical SAM domain protein [Bacteroides ovatus SD CC 2a]
          Length = 618

 Score = 62.7 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 46/271 (16%), Positives = 95/271 (35%), Gaps = 44/271 (16%)

Query: 151 DTDYSVEDKFERLSIVDGGYNR---KRGVTAFLTIQEGCDKFCTFCVVPYTRGIE-ISRS 206
           D D S +  + RL        R      +   + I  GC   C FC +   +G   +SRS
Sbjct: 287 DLDRSFDLPYTRLPHPKYKGKRIPAYDMIKFSINIHRGCFGGCAFCTISAHQGKFIVSRS 346

Query: 207 LSQVVDEARKLI---DNGVCEITLLGQNVNAWRGKGLDGEKCT----------------- 246
              ++ E +++I   D       L G + N ++ KG D   C                  
Sbjct: 347 KESILKEVKEVIQLPDFKGYLSDLGGPSANMYQMKGKDEAICKKCKRPSCIHPKVCPNLN 406

Query: 247 -----FSDLLYSLSEIKGLVRLRYTTSHPRDM------SDCLIKAHGDLDV--LMPYLH- 292
                  D+  ++  + G+ +    +    D+       + + ++  +     ++ ++  
Sbjct: 407 TDHRPLLDIYRAVDALPGIKKSFIGSGVRYDLLLHQSKDEAINRSTAEYTRELIVNHVSG 466

Query: 293 ---LPVQSGSDRILKSMNRRH--TAYEYRQIIDRI-RSVRPDIAISSDFIVGFPGETDDD 346
              +  +  SDR+L  M +        +++I DRI R       +   FI   PG  ++D
Sbjct: 467 RLKVAPEHTSDRVLSVMRKPSFEQFETFKRIFDRINREENLRQQLIPYFISSHPGCKEED 526

Query: 347 FRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
                 +  ++ +       ++P   T  + 
Sbjct: 527 MAELAVITKRLDFHLEQVQDFTPTPMTVATE 557


>gi|212692895|ref|ZP_03301023.1| hypothetical protein BACDOR_02395 [Bacteroides dorei DSM 17855]
 gi|212664576|gb|EEB25148.1| hypothetical protein BACDOR_02395 [Bacteroides dorei DSM 17855]
          Length = 545

 Score = 62.7 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 58/358 (16%), Positives = 110/358 (30%), Gaps = 52/358 (14%)

Query: 45  EDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVV 104
             M   + Y     +  A   + N         E++     R++ L            +V
Sbjct: 45  AGMIVDEIYHHQPDILAATTWLFN--------HEQLIHVASRVKAL-------LPKTCLV 89

Query: 105 VAGCVAQAEGEEILRRSPIVNVVV----------------GPQTYYRLPELLERARFGKR 148
           + G       EE LR++P V+ V                  P+ ++ +P L     + + 
Sbjct: 90  LGGPEFLGNNEEFLRKNPFVDCVFRGEGEEVFPQWLTCWNHPEQWHTVPGLCYLTPYKEY 149

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
             +    V +    +      +         L    GC   C FC V        + S+ 
Sbjct: 150 KDNGIARVLNFAGLVPPEQSRFFNWSKPFVQLETTRGCFNTCAFC-VSGGEKPVRTLSIE 208

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
            +    + +  +G+  + +L +  N               +LL    E    +R      
Sbjct: 209 SIRRRLQLIHAHGIKNVRVLDRTFNY--------NPRRAKELLRLFLEFHPDIRFHLE-I 259

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
           HP  +S+ L +    L   + +L   +QS  + +L+   R     +    + R     P+
Sbjct: 260 HPALLSEELKEELSLLPKGLLHLEAGIQSLREPVLEKSRRMGKLSDALDGL-RFLCALPN 318

Query: 329 IAISSDFIVGFP----GETDDDFRATMDLVD-KIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +   +D I G P     E  +D R   +    +I              GT      E+
Sbjct: 319 METHADLIAGLPLYHLHEIFEDVRTLAEYAAGEIQLESLKL-----LPGTEMRRRAEE 371


>gi|218900129|ref|YP_002448540.1| lipoic acid synthetase [Bacillus cereus G9842]
 gi|228903479|ref|ZP_04067604.1| Lipoyl synthase [Bacillus thuringiensis IBL 4222]
 gi|228910814|ref|ZP_04074623.1| Lipoyl synthase [Bacillus thuringiensis IBL 200]
 gi|228942142|ref|ZP_04104682.1| Lipoyl synthase [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|228968085|ref|ZP_04129091.1| Lipoyl synthase [Bacillus thuringiensis serovar sotto str. T04001]
 gi|228975071|ref|ZP_04135630.1| Lipoyl synthase [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228981711|ref|ZP_04142006.1| Lipoyl synthase [Bacillus thuringiensis Bt407]
 gi|226737632|sp|B7IMZ7|LIPA_BACC2 RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|218541304|gb|ACK93698.1| lipoic acid synthetase [Bacillus cereus G9842]
 gi|228777823|gb|EEM26095.1| Lipoyl synthase [Bacillus thuringiensis Bt407]
 gi|228784592|gb|EEM32612.1| Lipoyl synthase [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228791640|gb|EEM39236.1| Lipoyl synthase [Bacillus thuringiensis serovar sotto str. T04001]
 gi|228817476|gb|EEM63561.1| Lipoyl synthase [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|228848765|gb|EEM93610.1| Lipoyl synthase [Bacillus thuringiensis IBL 200]
 gi|228856164|gb|EEN00699.1| Lipoyl synthase [Bacillus thuringiensis IBL 4222]
 gi|326942793|gb|AEA18689.1| lipoyl synthase [Bacillus thuringiensis serovar chinensis CT-43]
          Length = 298

 Score = 62.7 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/214 (17%), Positives = 79/214 (36%), Gaps = 13/214 (6%)

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           ++V ++ +  +I +    RK     F+ +   C + C FC V      E+   L +    
Sbjct: 37  HTVCEEAKCPNIHECWAVRK--TATFMILGAVCTRACRFCAVKTGLPTEL--DLQEPERV 92

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
           A  ++  G+  + +        R    DG    F++ + ++        +    S    +
Sbjct: 93  ADSVVQMGLKHVVITAV----ARDDLKDGGAAVFAETVRAVRRKNPFTSIEVLPSDMAGV 148

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
            + L         ++ +    V+  S+R+      ++      + + R + ++PDI   S
Sbjct: 149 EENLKMLMDAKPDILNHNIETVRRLSNRV--RARAKYDRS--LEFLRRAKEMQPDIPTKS 204

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
             +VG  GET +D    MD +           +Y
Sbjct: 205 SIMVGL-GETREDLIEAMDDLRANNVDILTLGQY 237


>gi|325661804|ref|ZP_08150426.1| oxygen-independent coproporphyrinogen III oxidase [Lachnospiraceae
           bacterium 4_1_37FAA]
 gi|325471893|gb|EGC75109.1| oxygen-independent coproporphyrinogen III oxidase [Lachnospiraceae
           bacterium 4_1_37FAA]
          Length = 404

 Score = 62.7 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 47/252 (18%), Positives = 93/252 (36%), Gaps = 28/252 (11%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQN---VNAWRGKGLD- 241
           C K C +C   +  G         +      L+   + +   L +N      + G G   
Sbjct: 14  CMKKCAYCD--FLSGPA---PRETIDRYVTALVAE-IRQYQKLAENYRVTTIFFGGGTPS 67

Query: 242 ----GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQS 297
               G+     D L  + EI+    +    ++P  ++   ++A+    +    +   +QS
Sbjct: 68  ILSGGQMKEIFDALRDVFEIQADAEITME-ANPGTVTKENLQAYRACGI--NRISFGLQS 124

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
             D  LK + R HT  ++ +  D  R       I+ D I   PG+T + +  T+D V ++
Sbjct: 125 VDDEELKLLGRVHTMRQFEESYDLARKAGFQ-NINVDLISAIPGQTVESWEHTLDTVIRM 183

Query: 358 GYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACV--GQIIE 415
                 ++      GTP   +     EN K E     Q    E+ ++ +   +  G+   
Sbjct: 184 NPEHISAYSLIIEEGTPFYEIYG---ENAKEE-----QDSRCEKCLADDGKQMDTGKTFP 235

Query: 416 VLIEKHGKEKGK 427
            L ++  + +  
Sbjct: 236 KLPDEEAERRMY 247


>gi|166710545|ref|ZP_02241752.1| lipoyl synthase [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 337

 Score = 62.7 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 46/236 (19%), Positives = 77/236 (32%), Gaps = 24/236 (10%)

Query: 161 ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS--QVVDEARKLI 218
           E  S  +       G   F+ + E C + C+FC V + R           +    A  + 
Sbjct: 82  EEASCPNIHECFSHGTATFMILGEVCTRRCSFCDVAHGRPK----PPDANEPASLATTVA 137

Query: 219 DNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD---MSD 275
           D G+  + +   +    R    DG    F D + ++       R+   T   R    M  
Sbjct: 138 DMGLKYVVVTSVD----RDDLRDGGAQHFVDCIAAIRTSSPNTRIEILTPDFRGKGRMDR 193

Query: 276 CL-IKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSD 334
            L I A    DV    +        +     +           ++ R ++  P IA  S 
Sbjct: 194 ALDILALSPPDVFNHNIETVPDLYPN-----VRPGADYQWSLTLLQRFKAQHPSIATKSG 248

Query: 335 FIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN--MLEQVDENVKA 388
            ++G  GET +  +AT+  +           +Y     TP  +  M     E  KA
Sbjct: 249 IMLGL-GETMEQVQATLRDLRAHDVDMITIGQY--LQPTPHHHPVMRYWTPEEYKA 301


>gi|75907284|ref|YP_321580.1| cobalamin B12-binding [Anabaena variabilis ATCC 29413]
 gi|75701009|gb|ABA20685.1| Cobalamin B12-binding protein [Anabaena variabilis ATCC 29413]
          Length = 529

 Score = 62.7 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 54/368 (14%), Positives = 111/368 (30%), Gaps = 53/368 (14%)

Query: 34  CQMNVY-DSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92
           C  NV  ++                  +  DL++L+   +++               L  
Sbjct: 51  CDRNVNPETEA--------------DWEWCDLVILSAMLVQKP----------DFHALIQ 86

Query: 93  SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG-KRVVD 151
             ++ G    V V G    +  ++ L      + ++  +    +P+ LE    G ++ + 
Sbjct: 87  KAVRLGK--KVAVGGPYPTSIPQDALNS--GAHYLILDEGELTVPQFLEALNQGQEQGIF 142

Query: 152 TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE-ISRSLSQV 210
                 D  +          R   +   +    GC   C FC +    G +  ++   Q 
Sbjct: 143 RSLEKPDVSQSPMPRFDLLQRDAYLMMAIQFSRGCPFNCEFCDIITLYGRKPRTKEPQQT 202

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270
           + E   L D G      +  +          G +     LL  L          +T    
Sbjct: 203 IAELEALYDLGWRGSLFIVDD-------NFIGNQRNVKRLLRELIPWMKQHNYPFTFITE 255

Query: 271 RDM----SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR-RHTAYEYRQIIDRIRSV 325
             +     + +++   +       + L +++     L+   + ++T     +   +I   
Sbjct: 256 ASVNLAEDEEMLQLMSEAGFYA--VFLGIETPDQDSLQVTQKLQNTRNPLVEACRKINEA 313

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
              + I + FI+GF GE           V++    Q           T     L+     
Sbjct: 314 --GMLIYAGFILGFDGERPGAGERIQAFVEQTSIPQPMLGILQALPNTALWTRLQ----- 366

Query: 386 VKAERLLC 393
            K ERLL 
Sbjct: 367 -KEERLLE 373


>gi|295087624|emb|CBK69147.1| Fe-S oxidoreductase [Bacteroides xylanisolvens XB1A]
          Length = 628

 Score = 62.7 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 46/271 (16%), Positives = 95/271 (35%), Gaps = 44/271 (16%)

Query: 151 DTDYSVEDKFERLSIVDGGYNR---KRGVTAFLTIQEGCDKFCTFCVVPYTRGIE-ISRS 206
           D D S +  + RL        R      +   + I  GC   C FC +   +G   +SRS
Sbjct: 287 DLDRSFDLPYTRLPHPKYKGKRIPAYDMIKFSINIHRGCFGGCAFCTISAHQGKFIVSRS 346

Query: 207 LSQVVDEARKLI---DNGVCEITLLGQNVNAWRGKGLDGEKCT----------------- 246
              ++ E +++I   D       L G + N ++ KG D   C                  
Sbjct: 347 KESILKEVKEVIQLPDFKGYLSDLGGPSANMYQMKGKDEAICKKCKRPSCIHPKVCPNLN 406

Query: 247 -----FSDLLYSLSEIKGLVRLRYTTSHPRDM------SDCLIKAHGDLDV--LMPYLH- 292
                  D+  ++  + G+ +    +    D+       + + ++  +     ++ ++  
Sbjct: 407 TDHRPLLDIYRAVDALPGIKKSFIGSGIRYDLLLHQSKDEAINRSTAEYTRELIVNHVSG 466

Query: 293 ---LPVQSGSDRILKSMNRRH--TAYEYRQIIDRI-RSVRPDIAISSDFIVGFPGETDDD 346
              +  +  SDR+L  M +        +++I DRI R       +   FI   PG  ++D
Sbjct: 467 RLKVAPEHTSDRVLSVMRKPSFEQFETFKRIFDRINREENLRQQLIPYFISSHPGCKEED 526

Query: 347 FRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
                 +  ++ +       ++P   T  + 
Sbjct: 527 MAELAVITKRLDFHLEQVQDFTPTPMTVATE 557


>gi|160882454|ref|ZP_02063457.1| hypothetical protein BACOVA_00405 [Bacteroides ovatus ATCC 8483]
 gi|156112166|gb|EDO13911.1| hypothetical protein BACOVA_00405 [Bacteroides ovatus ATCC 8483]
          Length = 619

 Score = 62.7 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 46/271 (16%), Positives = 97/271 (35%), Gaps = 44/271 (16%)

Query: 151 DTDYSVEDKFERLSIVDGGYNR---KRGVTAFLTIQEGCDKFCTFCVVPYTRGIE-ISRS 206
           D D+S +  + RL        R      +   + I  GC   C FC +   +G   +SRS
Sbjct: 287 DLDHSFDLPYTRLPHPKYKGKRIPAYDMIKFSINIHRGCFGGCAFCTISAHQGKFIVSRS 346

Query: 207 LSQVVDEARKLI---DNGVCEITLLGQNVNAWRGKGLDGEKCT----------------- 246
              ++ E +++I   D       L G + N ++ KG D   C                  
Sbjct: 347 KESILKEVKEVIQLPDFKGYLSDLGGPSANMYQMKGKDEAICKKCKRPSCIHPKVCPNLN 406

Query: 247 -----FSDLLYSLSEIKGLVRLRYTTSHPRDM------SDCLIKAHGDLDV--LMPYLH- 292
                  D+ +++  + G+ +    +    D+       + + ++  +     ++ ++  
Sbjct: 407 TDHRPLLDIYHAVDTLPGIKKSFIGSGVRYDLLLHQSKDEAINRSTAEYTRELIVNHVSG 466

Query: 293 ---LPVQSGSDRILKSMNRRH--TAYEYRQIIDRI-RSVRPDIAISSDFIVGFPGETDDD 346
              +  +  SDR+L  M +        +++I DRI R       +   FI   PG  ++D
Sbjct: 467 RLKVAPEHTSDRVLSVMRKPSFEQFETFKKIFDRINREENLRQQLIPYFISSHPGCNEED 526

Query: 347 FRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
                 +  ++ +       ++P   T  + 
Sbjct: 527 MAELAVITKRLDFHLEQVQDFTPTPMTVATE 557


>gi|121592732|ref|YP_984628.1| lipoyl synthase [Acidovorax sp. JS42]
 gi|222109513|ref|YP_002551777.1| lipoyl synthase [Acidovorax ebreus TPSY]
 gi|171769304|sp|A1W2S7|LIPA_ACISJ RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|254809185|sp|B9MB93|LIPA_ACIET RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|120604812|gb|ABM40552.1| lipoic acid synthetase [Acidovorax sp. JS42]
 gi|221728957|gb|ACM31777.1| lipoic acid synthetase [Acidovorax ebreus TPSY]
          Length = 326

 Score = 62.7 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 36/216 (16%), Positives = 76/216 (35%), Gaps = 12/216 (5%)

Query: 153 DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVD 212
           ++ +    E  S  + G    RG   F+ + + C + C FC V + R   +     + ++
Sbjct: 67  EHKLHTVCEEASCPNIGECFGRGTATFMIMGDKCTRRCPFCDVGHGRPDPL--DKDEPLN 124

Query: 213 EARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
            A+ +    +  + +   +    R    DG    F + +    E+    ++   T   R 
Sbjct: 125 LAKTIAALRLKYVVITSVD----RDDLRDGGSGHFVECIQRTRELSPSTQIEILTPDFRG 180

Query: 273 MSDCLIKAH-GDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAI 331
             D  ++        +M +    V     R+ K             ++ + + + P +  
Sbjct: 181 RDDRALEILKAAPPDVMNHNLETV----PRLYKEARPGSDYQFSLNLLKKFKQLHPGVPT 236

Query: 332 SSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
            S  +VG  GETD++    M  +   G       +Y
Sbjct: 237 KSGLMVGL-GETDEEILEVMRDMRAHGIEMLTIGQY 271


>gi|89895882|ref|YP_519369.1| hypothetical protein DSY3136 [Desulfitobacterium hafniense Y51]
 gi|89335330|dbj|BAE84925.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 381

 Score = 62.7 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 48/204 (23%), Positives = 77/204 (37%), Gaps = 23/204 (11%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNG----VCEITLLGQNV-----NAWR 236
           C + C +C          S    +V  EA     N       EI L  Q V       + 
Sbjct: 11  CVQKCNYCA-------FYSEPWQEVKAEAYLAGLNREVELRQEIVLRQQEVQEEIETLFI 63

Query: 237 GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY----LH 292
           G G        ++L   LS I G +R +       + +   + A   L +L       + 
Sbjct: 64  GGGTPTALPE-AELGALLSIIHGQLRFKDGGEKTIEANPGTLTAE-KLRILSRQGINRIS 121

Query: 293 LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352
           L VQS +D +L+ + R H   E R+ +  IR       ++ D + G PG+T  D+R TM+
Sbjct: 122 LGVQSFNDDLLRQIGRIHRTEEVREGVQLIREAGFK-NLNLDLMFGLPGQTQADWRDTME 180

Query: 353 LVDKIGYAQAFSFKYSPRLGTPGS 376
              ++       +      GTP +
Sbjct: 181 EALRLRPEHLSVYGLMVEEGTPLA 204


>gi|218289613|ref|ZP_03493833.1| lipoic acid synthetase [Alicyclobacillus acidocaldarius LAA1]
 gi|218240263|gb|EED07446.1| lipoic acid synthetase [Alicyclobacillus acidocaldarius LAA1]
          Length = 308

 Score = 62.7 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 39/215 (18%), Positives = 78/215 (36%), Gaps = 16/215 (7%)

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS-RSLSQVVD 212
           ++V ++    ++ +    R      F+ + + C + C FC V   R  E+  R   +V D
Sbjct: 46  HTVCEEAHCPNLFECWEMRT---ATFMILGDICTRACRFCAVHTGRPNELDLREPERVAD 102

Query: 213 EARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
                +  G+  + +        R    DG    F++ + ++        +         
Sbjct: 103 AV---VAMGLEHVVITSV----ARDDLADGGASVFAETIRAVRRKVPTCSVEVLIPDFDG 155

Query: 273 MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAIS 332
             D L         ++ +    V+  SD    S+  R       +++ R + + PDI   
Sbjct: 156 NWDALAAVLDARPDVLNHNIETVRRLSD----SVRSRAKYDRTLELLRRSKEIAPDIPTK 211

Query: 333 SDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           S  +VG  GET ++   TMD +  +        +Y
Sbjct: 212 SSIMVGL-GETFEEIYETMDDLRAVDVDILTIGQY 245


>gi|331092010|ref|ZP_08340841.1| hypothetical protein HMPREF9477_01484 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330402211|gb|EGG81782.1| hypothetical protein HMPREF9477_01484 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 574

 Score = 62.7 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 47/289 (16%), Positives = 101/289 (34%), Gaps = 28/289 (9%)

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +  +  L +   K   +L + + G     + +E+LRR P V  +V  +      E++   
Sbjct: 68  ISYVETLIHEIHKIMPNLPIWLGGPEVSYDAQEVLRRLPEVRGIVKGEGEETFSEVVSCY 127

Query: 144 RFGK------------------RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEG 185
             GK                  R+V+  +       R+  V       +    +     G
Sbjct: 128 IEGKSEDYLREIKGISYRKKDGRIVENPWREIMDLSRVPFVYEDMEEFKNKIIYYETSRG 187

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C   C++C+          R L  V  E +  +DN V ++  + +  N            
Sbjct: 188 CPFSCSYCL-SSIDKCLRFRDLDLVKKELQFFLDNEVPQVKFVDRTFNCKHSHS------ 240

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
              ++   ++E    +   +       +++  ++  G +   +  L + VQS + + +  
Sbjct: 241 --MEIWRYIAEHDNGITNFHFEISADLLNEEELELLGTMREGLVQLEIGVQSTNPKTIGE 298

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           + R     +    + R+ + R +I    D I G P E  + F  + + V
Sbjct: 299 IKRTMRFDKVADAVKRVNAGR-NIHQHLDLIAGLPYEDYESFGKSFNDV 346


>gi|262199567|ref|YP_003270776.1| radical SAM protein [Haliangium ochraceum DSM 14365]
 gi|262082914|gb|ACY18883.1| Radical SAM domain protein [Haliangium ochraceum DSM 14365]
          Length = 766

 Score = 62.7 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 48/256 (18%), Positives = 89/256 (34%), Gaps = 37/256 (14%)

Query: 151 DTDYSVEDKFERLSIV---DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRS 206
           + D   E  ++R+      D        +   +TI  GC   CTFC +    G  I +RS
Sbjct: 357 EMDRVFELPYQRVPHPVYGDARIPAYEMIRFSVTITRGCFGGCTFCSITEHEGRIIQNRS 416

Query: 207 LSQVVDEARKLIDN--GVCEIT--LLGQNVNAWR----------------------GKGL 240
              ++ E  ++ D   G   +   L G   N WR                       + L
Sbjct: 417 EDSILREIERIRDTVPGFTGVISDLGGPTANMWRLACKSRAIEAACRRPSCVYPGICENL 476

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL--DVLMPYLHLPVQSG 298
             ++     L      + G+ ++   +    D++        +L    +  YL +  +  
Sbjct: 477 GTDQTPLVSLYRKARALPGIDKILIASGVRYDLAVETPSYVRELVTHHVGGYLKIAPEHV 536

Query: 299 SDRILKSMNRR--HTAYEYRQIIDRI-RSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
           S   L  M +    T   ++++ +R  ++      +   FI   PG TD+D       + 
Sbjct: 537 SRGPLAHMMKPGIGTYERFKELFERYSKAAGKKQYLIPYFIAAHPGTTDEDMLELALWLK 596

Query: 356 KIGY--AQAFSFKYSP 369
           + G+   Q  +F  SP
Sbjct: 597 RNGFRADQVQTFLPSP 612


>gi|329922250|ref|ZP_08277952.1| radical SAM domain protein [Paenibacillus sp. HGF5]
 gi|328942287|gb|EGG38557.1| radical SAM domain protein [Paenibacillus sp. HGF5]
          Length = 590

 Score = 62.7 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 53/309 (17%), Positives = 102/309 (33%), Gaps = 31/309 (10%)

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVV---GPQTYYRLPELL 140
           +     + +   K   ++ +++ G     + E  ++R   V+ +V   G +T++ L + +
Sbjct: 67  IEETIKVIDIVKKIMPEVTIILGGPEVSYDTEYWMKRLHNVDFIVMGEGEETFHHLLQTI 126

Query: 141 ERARFGKRVVDTDYSVEDKF--------------ERLSIVDGGYNRKRGVTAFLTIQEGC 186
           E  R    V    Y  +D+                                 +     GC
Sbjct: 127 EGDRKYHFVYGVAYRKQDEIIVNPGRPKSILAELPSPHRFPEDIPHLGKRVVYFETSRGC 186

Query: 187 DKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT 246
              C FC+     G      + +   +   LI+NG   I  + +  N  R   L      
Sbjct: 187 PFSCQFCLSSIEVG-VRYYDIERTKADILYLIENGAKLIKFVDRTFNIKRDYAL------ 239

Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILK 304
             ++   L E  G    ++  +    M   ++    +     +     + VQS +D   +
Sbjct: 240 --EMFEFLIENHGGCVFQFEITADI-MRPEVLDYLANHAPPGIFR-FEIGVQSTNDPTNE 295

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
            + RR    +  + +  I+  R  I    D I G P E  + FR T + V  +G  +   
Sbjct: 296 LVKRRQNFTKLSRTVTMIKDSR-KIDQHLDLIAGLPEEDYNTFRKTFNDVFALGPEELQL 354

Query: 365 FKYSPRLGT 373
                  GT
Sbjct: 355 GFLKMLRGT 363


>gi|297531162|ref|YP_003672437.1| coproporphyrinogen dehydrogenase [Geobacillus sp. C56-T3]
 gi|297254414|gb|ADI27860.1| Coproporphyrinogen dehydrogenase [Geobacillus sp. C56-T3]
          Length = 519

 Score = 62.7 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/247 (14%), Positives = 82/247 (33%), Gaps = 13/247 (5%)

Query: 129 GPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
           G        +L E        ++   ++ D+  +L++V   Y+    V+ ++ I   C  
Sbjct: 150 GLSKEEAHRKLAEEYLVTNEKIELMQAIVDR--QLTVVPDLYDLAHEVSIYIGIPF-CPT 206

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS 248
            C +C  P         S+   +      ++     +   G  +      G      T  
Sbjct: 207 KCAYCTFPAYAINGRQGSVDAFLAGLHYEMEAVGRFLRERGIRITTIYYGGGTPTSITAD 266

Query: 249 DLLYSLS-------EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
           ++    +       ++  +  +      P  ++   ++      +    + +  QS    
Sbjct: 267 EMDRLYAHMYDVFPDVDRVREITVEAGRPDTITPEKLEVLKKWRI--DRISINPQSYIQE 324

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
            LK++ R HT  E        R +  +  I+ D I+G PGE   +F  T+   +++    
Sbjct: 325 TLKAIGRHHTVEETIHKFHLARQMGMN-NINMDLIIGLPGEGLAEFTHTLAETERLMPES 383

Query: 362 AFSFKYS 368
                 S
Sbjct: 384 LTIHTLS 390


>gi|213025621|ref|ZP_03340068.1| hypothetical protein Salmonelentericaenterica_25523 [Salmonella
           enterica subsp. enterica serovar Typhi str. 404ty]
          Length = 78

 Score = 62.7 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 30/68 (44%), Gaps = 2/68 (2%)

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPWLQSVV 439
           V E VK ER     +  ++         VG+ I V++++  +E   G+ +  +P +   V
Sbjct: 4   VPEEVKEERWNRFMQLQQQISAERLQEKVGREILVIVDEVDEEGAIGRSMADAPEIDGAV 63

Query: 440 LNSKNHNI 447
             +   N+
Sbjct: 64  YLNGETNV 71


>gi|118443605|ref|YP_877565.1| biotin synthase [Clostridium novyi NT]
 gi|118134061|gb|ABK61105.1| biotin synthase [Clostridium novyi NT]
          Length = 348

 Score = 62.7 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/204 (15%), Positives = 72/204 (35%), Gaps = 30/204 (14%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIE-ISR-SLSQVVDEARKLIDNGVCEITLLGQNVNAWRG 237
           +     C   CT+C +          R SL  +++   +    G     L G        
Sbjct: 56  IEFTNYCKNTCTYCGIRVFNKKVDRYRLSLEDILNCCSEGYRLGYRTFVLQG-------- 107

Query: 238 KGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP--- 294
               GE   F+D    + EI   ++ ++     +D +  L       +    Y       
Sbjct: 108 ----GEDPYFTD--DKIVEIVKNIKEKF-----KDCAVTLSIGEKSYESYKKYYDAGADR 156

Query: 295 ----VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
                ++ S  + + ++   +    R+ +  ++ +     + + F++G PG+T++DF   
Sbjct: 157 YLLRHETASKTLYEKLHPGMSFENRRRCLRDLKEI--GYQVGAGFMIGIPGQTNEDFVKD 214

Query: 351 MDLVDKIGYAQAFSFKYSPRLGTP 374
           +  + ++         + P+  TP
Sbjct: 215 LLFLKELEPHMVGIGPFIPQCDTP 238


>gi|282880323|ref|ZP_06289037.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Prevotella timonensis CRIS 5C-B1]
 gi|281305825|gb|EFA97871.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Prevotella timonensis CRIS 5C-B1]
          Length = 386

 Score = 62.7 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 43/241 (17%), Positives = 85/241 (35%), Gaps = 30/241 (12%)

Query: 186 CDKFCTFC-VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK 244
           C   C +C     T      + +  +  E R   D      T L ++ +  R   + G  
Sbjct: 11  CASRCIYCGFYSTTNLSLRQKYVDALCQELRLRRDYLSDIETNLSEDTHLIRTIYIGGGT 70

Query: 245 CTFSDLLYSLSEIKGLVRLRYTT---------------SHPRDMSDCLIKAHGDLDVLMP 289
            +       L +I  ++   Y                  +P D+S   ++      +   
Sbjct: 71  PS-QLTPAQLQQIFEVIGSIYFNGNLSTMRSQCEVTLECNPDDISPSFVEFIEQSPI--N 127

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
            + + VQ+ S+  L  ++RRH A +    ++R+R +  D  IS D + GFP ++   +  
Sbjct: 128 RISMGVQTFSNAQLNFLHRRHQAEDVATAVNRLREIGVD-NISIDLMFGFPNQSLAAWER 186

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDAC 409
            +  V  +G     ++      GTP + +L+             + +   E  +    A 
Sbjct: 187 DILQVLDLGVEHISAYSLMYEEGTPLNQLLK----------SNKIHEIDDELSLQMYQAL 236

Query: 410 V 410
           V
Sbjct: 237 V 237


>gi|254520106|ref|ZP_05132162.1| radical SAM domain-containing protein [Clostridium sp. 7_2_43FAA]
 gi|226913855|gb|EEH99056.1| radical SAM domain-containing protein [Clostridium sp. 7_2_43FAA]
          Length = 561

 Score = 62.7 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 48/296 (16%), Positives = 100/296 (33%), Gaps = 33/296 (11%)

Query: 122 PIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLT 181
             V   +G +    +  L  +A  G+ + +    + +  E +   +   N    +  +  
Sbjct: 121 EFVEYKLGEREINSIRSLYYKAD-GEVISNGKRPLMNMNELIFPYEEDENLDNKIVYYEA 179

Query: 182 IQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD 241
              GC   C +C+   T G      + +V  E +  ID  V  +  + +  N        
Sbjct: 180 -SRGCPFNCKYCLSSTTHG-VRFLDIDRVKQELKYFIDKEVRLVKFVDRTFNCNHKFT-- 235

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
                   +   L       +  +  S        L +             + VQ+ +D 
Sbjct: 236 ------MAIWEFLINQDTKTQFHFEISADILKKSEL-ELLRKAPKDRFQFEVGVQTTNDD 288

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV-----DK 356
           +L  +NR     + ++ ++ +  +R +I    D I G PGE  + F+ + + V     ++
Sbjct: 289 VLNRINRFVNFSDIKEKVEELIQIR-NIKQHLDLIAGLPGEDYNSFKNSFNDVYSISPEE 347

Query: 357 IGY--------------AQAFSFKYSPRLGTPGSNMLE-QVDENVKAERLLCLQKK 397
           I                A+ +  KYSP          +   DE +K +++  +  K
Sbjct: 348 IQLGFLKLLRGSSMREEAEEYGMKYSPYPPYEILKTKDISYDELIKLKKVEEMVDK 403


>gi|224026565|ref|ZP_03644931.1| hypothetical protein BACCOPRO_03322 [Bacteroides coprophilus DSM
           18228]
 gi|224019801|gb|EEF77799.1| hypothetical protein BACCOPRO_03322 [Bacteroides coprophilus DSM
           18228]
          Length = 315

 Score = 62.7 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 35/203 (17%), Positives = 69/203 (33%), Gaps = 13/203 (6%)

Query: 188 KFCTFCVV----PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
             CT+C      P     + S ++   ++E ++       ++  L             GE
Sbjct: 43  GGCTYCNNQTFNPAYCRDDRSVTMQ--LEEGKRFFARKYPQMKYLA---YFQAYTNTYGE 97

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGD-LDVLMPYLHLPVQSGSDRI 302
                 +      ++G+V L   T  P  M D L+    +        +   ++S  DR 
Sbjct: 98  LELLKRMYEEALAVEGVVGLVIGT-RPDCMPDSLLDYLEEVNRRTFLLVEYGIESADDRT 156

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           L+ +NR H+       +   R+    I      I+G PGE+ +D     + + ++     
Sbjct: 157 LERINRGHSFACTEDAVR--RTAARGIRTGGHVILGLPGESREDLIKQAERLSELPLTTL 214

Query: 363 FSFKYSPRLGTPGSNMLEQVDEN 385
              +     GT  ++      E 
Sbjct: 215 KMHQLQLIRGTRMAHEYALHPEE 237


>gi|167035842|ref|YP_001671073.1| lipoyl synthase [Pseudomonas putida GB-1]
 gi|166862330|gb|ABZ00738.1| lipoic acid synthetase [Pseudomonas putida GB-1]
          Length = 338

 Score = 62.7 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 35/214 (16%), Positives = 74/214 (34%), Gaps = 10/214 (4%)

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           + +    E  S  + G     G   F+ + + C + C FC V + R   +   L +  + 
Sbjct: 78  HKLHSVCEEASCPNLGECFSGGTATFMIMGDICTRRCPFCDVGHGRPKPL--DLDEPKNL 135

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
           A  + D  +  + +   +    R    DG    F+D +  +  +   V+L       R  
Sbjct: 136 AVAIADLRLKYVVITSVD----RDDLRDGGAQHFADCIREIRALSPGVQLETLVPDYRGR 191

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
            D  ++         P +         R+ K+            ++ + + + P +   S
Sbjct: 192 MDVALEITAQEP---PDVFNHNLETVPRLYKAARPGSDYDWSLDLLQKFKQMVPHVPTKS 248

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
             ++G  GETD++    M  + +         +Y
Sbjct: 249 GLMLGL-GETDEEVIEVMHRMREHEIDMLTLGQY 281


>gi|323141881|ref|ZP_08076742.1| radical SAM domain protein [Phascolarctobacterium sp. YIT 12067]
 gi|322413628|gb|EFY04486.1| radical SAM domain protein [Phascolarctobacterium sp. YIT 12067]
          Length = 571

 Score = 62.7 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/236 (13%), Positives = 83/236 (35%), Gaps = 28/236 (11%)

Query: 179 FLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK 238
            + +  GC + C FC+  Y       R L  ++ +  K  +       +           
Sbjct: 248 IVEVARGCGRHCRFCMAGYCFRKPRPRKLENILADIAKRPERTKKVGLMGA--------- 298

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
               +    ++L   L  ++  +     +     +++ +  A          + +  ++G
Sbjct: 299 -AVSDHPQMAELTEYL--VEHKIPFSVASMRADMLTEQIAHALAQSGQ--RTMTVAPEAG 353

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSV-RPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
           S+R+  ++N+  T       I+   +    +I +   +++G PGE D+D   T++++ ++
Sbjct: 354 SERMRAAINKGITEEHVYNSIELAAAAGMRNIKLY--YMIGLPGEKDEDIVETVEMIKRV 411

Query: 358 GYAQ----------AFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQV 403
                              + P+  TP        +     +R   L   L++++ 
Sbjct: 412 RAKMDAVGNKGELVISVNGFVPKPFTP-YQWAPLCNVRTLKKRFKILSDGLKKEKR 466


>gi|237748856|ref|ZP_04579336.1| Fe-S oxidoreductase [Oxalobacter formigenes OXCC13]
 gi|229380218|gb|EEO30309.1| Fe-S oxidoreductase [Oxalobacter formigenes OXCC13]
          Length = 776

 Score = 62.7 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 80/225 (35%), Gaps = 34/225 (15%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDN--GVCEIT--LLGQNVNA 234
           + I  GC   C+FC +    G  I SRS   V+ E  ++ DN  G   +   L G   N 
Sbjct: 411 VNIMRGCFGGCSFCSITEHEGRIIQSRSEPSVLREIEEIRDNVDGFTGVISDLGGPTANM 470

Query: 235 WR----------------------GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
           +R                       K L+ +      L      + G+ ++   +    D
Sbjct: 471 YRLGCRDEKIQSVCRRLSCVYPQICKNLNTDHSKLISLYRKARALPGVKKILIGSGVRYD 530

Query: 273 MSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRRH--TAYEYRQIIDRI-RSVRP 327
           ++    +   +L    +   L +  +     +L  M +    T  E++++ DR  +    
Sbjct: 531 IAVKSPEYIRELVTHHVGGLLKIAPEHTEQNVLSKMMKPGIGTYDEFKRLFDRYSKEAGK 590

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGY--AQAFSFKYSPR 370
           +  +   FI   PG TD+D       + +  +   Q  +F  +P 
Sbjct: 591 EQYLVPYFIAAHPGATDEDMLNLALWLKRNRFRPDQVQTFMPTPL 635


>gi|225419860|ref|ZP_03762163.1| hypothetical protein CLOSTASPAR_06201 [Clostridium asparagiforme
           DSM 15981]
 gi|225041484|gb|EEG51730.1| hypothetical protein CLOSTASPAR_06201 [Clostridium asparagiforme
           DSM 15981]
          Length = 596

 Score = 62.7 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 72/198 (36%), Gaps = 10/198 (5%)

Query: 183 QEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG 242
             GC   C++C+          R +S V  E    ++  V ++  + +  N         
Sbjct: 206 SRGCPFSCSYCL-SSVDKALRFRPISLVKRELDWFLERKVPQVKFVDRTFNC-------- 256

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
           +K     +   + E    V   +       + +  ++    +   +  L + VQS +   
Sbjct: 257 KKSHALAIWRHILEHDNGVTNFHFEIAADLLDEEAMELLEKMRPGLVQLEIGVQSTNPET 316

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           L+ ++RR    E R+I  RI S   +I    D I G P E  + FR + + V  +   Q 
Sbjct: 317 LREIHRRTDIGEIRRITARINS-WHNIHQHLDLIAGLPWEGIESFRTSFNEVYGMEPEQL 375

Query: 363 FSFKYSPRLGTPGSNMLE 380
                    G+  + M E
Sbjct: 376 QLGFLKVLKGSHMAEMAE 393


>gi|118444631|ref|YP_877920.1| coproporphyrinogen III oxidase [Clostridium novyi NT]
 gi|118135087|gb|ABK62131.1| oxygen-independent coproporphyrinogen III oxidase [Clostridium
           novyi NT]
          Length = 477

 Score = 62.7 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 59/320 (18%), Positives = 115/320 (35%), Gaps = 34/320 (10%)

Query: 126 VVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLS-------IVDGGYNRKRGVTA 178
           +++G +    + ++++     + ++ T    E+ F RL        I      R      
Sbjct: 92  ILIGIRPTKIVLDMMDEGLSEEEIIKTLQ--EEYFARLDKAKLCINIAKAERARVNKDPK 149

Query: 179 FLTIQEG---CDKFCTFCVVPY--TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVN 233
            ++I  G   C   C +C        G   S+ +   +++  + ID     I   G N+ 
Sbjct: 150 NISIYIGMPFCPTTCLYCSFASNPIAGRNTSKMVEPYLEKLNEEIDIIKEFIDKKGLNIE 209

Query: 234 AWR---GKGLDGEKCTFSDLLYSLSE--IKGLVRLRYTTSHPRD--MSDCLIKAHGDLDV 286
                 G      +  F +L+  + E  I G     +     R   +++  +K     + 
Sbjct: 210 CVYFGGGTPTSINENQFENLIKKVHESFISGRKVKEFNVECGRPDSITEGKLKTMKKYN- 268

Query: 287 LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDD 346
            +  + +  Q+ ++  LK + R HT  +  +  +  R +  D  I+ D IVG P ET + 
Sbjct: 269 -VSRISINPQTMNEDTLKLIGRHHTVEDIIEKFNMARKIGFD-NINMDIIVGLPNETLNH 326

Query: 347 FRATMDLVDKIGYAQAFSFKYSPRLGTPGS--------NMLEQVDENVKAERLLCLQKKL 398
              T   + K+          S + G+            +LEQ   N   ER   L ++L
Sbjct: 327 IENTCTEILKLKPDSLTVHGMSIKRGSKLYEEIYIDKVRILEQNSLNEMYERTSKLAEEL 386

Query: 399 REQ--QVSFNDACVGQIIEV 416
             +   +      VG +  V
Sbjct: 387 NMKPYYMYRQKNMVGHMENV 406


>gi|62391133|ref|YP_226535.1| coproporphyrinogen III oxidase [Corynebacterium glutamicum ATCC
           13032]
 gi|161486712|ref|NP_601492.2| coproporphyrinogen III oxidase [Corynebacterium glutamicum ATCC
           13032]
 gi|41326472|emb|CAF20634.1| PUTATIVE ANAEROBIC COPROPORPHYRINOGEN III OXIDASE [Corynebacterium
           glutamicum ATCC 13032]
          Length = 380

 Score = 62.7 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 47/238 (19%), Positives = 84/238 (35%), Gaps = 24/238 (10%)

Query: 186 CDKFCTFCVV-PYTRGIEISRS-LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
           C   C +C    YT G   S +     +D     ++  V  +     N        + G 
Sbjct: 13  CSTRCGYCDFNTYTAGELGSTAGPDTYLDSLEVELEMAVASL----DNPRQAETIFIGGG 68

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMS---------DCLIKAHGDLDVLMPYLHLP 294
             +       L+ + G VR  +  +   +++                 +       + L 
Sbjct: 69  TPSLI-GADGLARVLGAVRNTFGIADGAEVTTESNPESTSPEFFDGLREAG--YNRISLG 125

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           +QS S  +LK ++R HT           R    +  ++ D I G P ETDDD R T+D V
Sbjct: 126 MQSASSSVLKVLDRTHTPGRPVAAAKEAREAGFE-HVNLDMIYGTPTETDDDVRKTLDAV 184

Query: 355 DKIGYAQAFSFKYSPRLGTPGSNMLEQ-----VDENVKAERLLCLQKKLREQQVSFND 407
            +       ++      GT  +  + +      DE+V A+R   +  +LR     + +
Sbjct: 185 LEANVDHVSAYSLIVEDGTAMARKVRKGELPAPDEDVYADRFELIDARLRSAGFDWYE 242


>gi|291287639|ref|YP_003504455.1| hypothetical protein Dacet_1735 [Denitrovibrio acetiphilus DSM
           12809]
 gi|290884799|gb|ADD68499.1| conserved hypothetical protein [Denitrovibrio acetiphilus DSM
           12809]
          Length = 297

 Score = 62.7 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 34/192 (17%), Positives = 69/192 (35%), Gaps = 9/192 (4%)

Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-GLDGEKCT 246
             C +C V    G E      QV +   KL   G+ +  +  Q+ +   G      E+  
Sbjct: 40  GGCIYCSVDSFDGAEEGTIAEQVAERIEKLKRRGINKYIIYFQSYSNTYGTVETIRERVN 99

Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306
            + +   +  +    R         +    L       +V++ Y    +QS +D  L  +
Sbjct: 100 CALVDDGIVAVHIGTRPDVIDREKLEYLQELN---ATYEVVVEY---GLQSANDVTLAKV 153

Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
           NR HT  +++  +         + + +  I G PG++  D  +++ ++ ++G        
Sbjct: 154 NRGHTVQDFKDAVALTHEY--GLKVCAHVIFGLPGDSRQDMISSVRMLTELGVYSVKFHH 211

Query: 367 YSPRLGTPGSNM 378
                GT    M
Sbjct: 212 LHVVKGTVLEKM 223


>gi|259906709|ref|YP_002647065.1| coproporphyrinogen III oxidase [Erwinia pyrifoliae Ep1/96]
 gi|224962331|emb|CAX53786.1| O2-independent coproporphyrinogen III oxidase [Erwinia pyrifoliae
           Ep1/96]
 gi|283476492|emb|CAY72307.1| O2-independent coproporphyrinogen III oxidase [Erwinia pyrifoliae
           DSM 12163]
          Length = 457

 Score = 62.7 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 42/236 (17%), Positives = 84/236 (35%), Gaps = 21/236 (8%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC        +++R   +  D    L+        L  Q   +    G  G   
Sbjct: 62  CHRLCYFC----GCNKQVTRQQHKADDYLAALMLEIAARARLFQQRTVSQMHWG--GGTP 115

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL-------MPYLHLPVQSG 298
           TF      +  +   +R  +  S   ++S  +     +LDVL          L + VQ  
Sbjct: 116 TF-LNKEQIGRLMACLRQHFHFSDTAEISIEVDPREIELDVLDHLRAEGFNRLSMGVQDF 174

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           + ++ + +NR         ++ R R +   I+ + D I G P +T + F  T+  V ++ 
Sbjct: 175 NKQVQEKVNRVQDEETIFALVARARQL-GFISTNIDLIYGLPAQTPESFAFTLQKVAELN 233

Query: 359 YAQAFSFKYSPRLGTPGSN---MLEQVDENVKAERLLCLQKKLREQQVSFNDACVG 411
             +   F Y+       +       ++ +    ++L  LQ+ +           +G
Sbjct: 234 PDRLSVFNYAHMPALFAAQRKIREAELPDA--QQKLAILQQTIATLTAQDYQ-FIG 286


>gi|220920813|ref|YP_002496114.1| radical SAM domain-containing protein [Methylobacterium nodulans
           ORS 2060]
 gi|219945419|gb|ACL55811.1| Radical SAM domain protein [Methylobacterium nodulans ORS 2060]
          Length = 517

 Score = 62.7 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 67/419 (15%), Positives = 130/419 (31%), Gaps = 74/419 (17%)

Query: 42  LRMEDMFFSQGYERV----NSMDDADL----------IVLNTCHIREKAAEKVYSFLGRI 87
             +     + G+E           AD           ++  +C           + +  I
Sbjct: 26  EIVAGAARAAGHEVALIDLQVESHADFDRLLRSFRPDVIAFSC--------NYLANVPEI 77

Query: 88  RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPI-VNVVVGPQTYYRLPELLERARFG 146
            +L  S  ++     VV+ G  A    EE+L      V+ V+  +    LP+LLE     
Sbjct: 78  IDLAKSAKRDLPRCFVVIGGHSASFTAEELLEHGNGAVDCVLKGEGEAVLPQLLEAVAQD 137

Query: 147 KRVVDTDY----------------SVEDKFERLSIVDGGYNRKRG---VTAFLTIQEGCD 187
           +  V                    S++D      ++        G     A +    GC 
Sbjct: 138 RASVAQVPGAVTLDGAGPPPRFITSLDDSRPARDLLRHRRKYFIGMLDPCASVEFARGCP 197

Query: 188 KFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT 246
             CTFC      G    + S  + V+E   + + G+  +                 +   
Sbjct: 198 WDCTFCSAWTFYGRSYRAMSPERAVEEVAGIREPGIFLV-----------------DDVA 240

Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLM-----PYLHLPVQSGSDR 301
           F    + L+  +GL R      +  +    ++  + D+          Y+ + +++  + 
Sbjct: 241 FVHEAHGLAIGEGLARRGVRKEYYLETRGDVLLRNKDVFRFWSKIGLKYMFIGLEAIDEE 300

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
            LK   +R    +  + ++  RS+   I ++ + I   P    D F        +I    
Sbjct: 301 GLKRFRKRVGLDKNFEALEFARSL--GITVAINLIAD-PDWDRDRFETIRQWCLEIP-EI 356

Query: 362 AFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQV---SFNDACVGQIIEVL 417
                 +P  GT      E         RL  +Q  +   ++    F    V +  +VL
Sbjct: 357 VNISVNTPYPGTEIWR-TETRPLQSLDYRLYDIQHAVLPTRLPLPEFYAELV-RTQQVL 413


>gi|188585307|ref|YP_001916852.1| Radical SAM domain protein [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179349994|gb|ACB84264.1| Radical SAM domain protein [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 468

 Score = 62.7 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 58/361 (16%), Positives = 115/361 (31%), Gaps = 57/361 (15%)

Query: 43  RMEDMFFSQGYERVNSMDD-----------ADLIVLNTCHIREKAAEKVYSFLGRIRNLK 91
            M  +   +GY+     ++           +DL+ L+T  I   A    +          
Sbjct: 28  IMATILKQKGYDVEVQAEEIRSLNFDRIYNSDLVGLST--ITSTAPRAYHL--------- 76

Query: 92  NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE-RARFGKRVV 150
             +IK   D+ +V+ G       EE L  +    +  G +++  L E ++ +   GK+  
Sbjct: 77  ADKIKNQVDIPIVIGGSHVTFYPEEALSHADFCVMGEGEKSFLELVEFIDTQKDSGKKPE 136

Query: 151 DTD----YSVEDKFERLSIVDGGYNRKRGVTAFLTI-------------QEGCDKFCTFC 193
           +      ++   +  + S+ D   +          I               GC   C FC
Sbjct: 137 NIPGLAYFNENKELIKNSLPDPVTHNDLPFPDLSLIAGSEKMNILPMETSRGCPFGCKFC 196

Query: 194 VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS 253
            V    G +       +   A +L      +I     N  A R       + T+  +   
Sbjct: 197 SVIKMFGKK--YRFKHIDKVADELARLSPAKIFFYDDNFAADR-------ERTYQLMKKI 247

Query: 254 LSEIKGLVRLRYTTSHPRDM--SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
           +S     + +++      D+     L+    +       LH+  +S +   L+  N+  +
Sbjct: 248 ISRRD--INIQWGAQVRADIYKDPELLDIMKEAGG--RMLHIGFESVNQSTLEEYNKSLS 303

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
             E +Q I  I+       I   F++G   +       T++   K            P  
Sbjct: 304 IDETKQAIKTIKDK--GFHIHGMFVIGSDHDDVRTAHETVNFALKHKIDTIQLLILVPIP 361

Query: 372 G 372
           G
Sbjct: 362 G 362


>gi|256396170|ref|YP_003117734.1| coproporphyrinogen III oxidase [Catenulispora acidiphila DSM 44928]
 gi|256362396|gb|ACU75893.1| oxygen-independent coproporphyrinogen III oxidase [Catenulispora
           acidiphila DSM 44928]
          Length = 408

 Score = 62.7 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 45/239 (18%), Positives = 88/239 (36%), Gaps = 25/239 (10%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C   C +C        E+    SQ    A  + +  +    L G ++         G   
Sbjct: 41  CASRCGYCDFNTYTASELGGGASQATYGATAIEEIRLARTVLGGADLPVQTVFFGGGTPT 100

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL------------HL 293
                   L  + G VR  +  +   +++        + + + P                
Sbjct: 101 ML--PAKDLVALLGAVRDEFGLAPDAEVTTE-----ANPESVNPAYLAELRAGGFTRISF 153

Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
            +QS  + +L+ ++RRHT       +   R    +  ++ D I G PGE+DDD+RA++D 
Sbjct: 154 GMQSAREHVLQILDRRHTPGRPEACVREAREAGFE-HVNLDLIYGTPGESDDDWRASLDA 212

Query: 354 VDKIGYAQAFSFKYSPRLGTPGSNMLEQ-----VDENVKAERLLCLQKKLREQQVSFND 407
                     ++      GT  +  +++     +D++V A+R L   +KL     S+ +
Sbjct: 213 AIGAAPDHVSAYSLIVEDGTRLAARVKRGELPMIDDDVHADRYLIADEKLAAAGYSWYE 271


>gi|164687419|ref|ZP_02211447.1| hypothetical protein CLOBAR_01060 [Clostridium bartlettii DSM
           16795]
 gi|164603193|gb|EDQ96658.1| hypothetical protein CLOBAR_01060 [Clostridium bartlettii DSM
           16795]
          Length = 685

 Score = 62.7 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 55/319 (17%), Positives = 107/319 (33%), Gaps = 50/319 (15%)

Query: 146 GKRVVDTDYSVEDKFERLSIVD--GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            +  +D  Y++        I +  GG      V   +    GC   C+FC + + +G  +
Sbjct: 277 NREELDAVYALPYAKTYHPIYESMGGIPAINEVKFSIVNNRGCFGSCSFCAITFHQGRAV 336

Query: 204 -SRSLSQVVDEARK----------LIDNGVCEITLLGQNVNAWRGKG------------- 239
            SRS   +++EA++          + D G       G   N    KG             
Sbjct: 337 QSRSHESILEEAKEITHLPDFKGYIHDVGGPTANFRGPACNKQVTKGACKNRQCLDPSPC 396

Query: 240 --LDGEKCTFSDLLYSLSEIKGLVR------LRYTTSHPRDMSDCLIKAHGDLDVLMPYL 291
             L  +   + +LL  +  + G+ +      +RY        +  L +       +   L
Sbjct: 397 KNLKVDHTDYIELLRKVRNVPGVKKVFVRSGIRYDYVMADKDNKFLRELIKHH--VSGQL 454

Query: 292 HLPVQSGSDRILKSMNRRH--TAYEYRQIIDRI-RSVRPDIAISSDFIVGFPGETDDDFR 348
            +  +  ++ +L  M +    T  ++RQ    I R +  +  +    +   PG T +   
Sbjct: 455 KVAPEHVAEEVLHYMQKPAGETYEKFRQKYFDINRQLGMNQYLIPYLMSSHPGSTLNSAI 514

Query: 349 ATMDLVDKIGYAQAFSFKYSPRLGTPGSNM-------LEQVDENV-KAERLLCLQKKLRE 400
              + +  I Y       + P  GT  + M        +     V K+     +Q+ L +
Sbjct: 515 ELAEYLRDIHYQPEQVQDFYPTPGTLSTAMFYTGLDPRDMKPVYVPKSREEKAMQRALLQ 574

Query: 401 QQVSFNDACVGQIIEVLIE 419
                N   V    + L+E
Sbjct: 575 FSQPRNYDLV---HKALVE 590


>gi|167034090|ref|YP_001669321.1| lipoyl synthase [Pseudomonas putida GB-1]
 gi|166860578|gb|ABY98985.1| lipoic acid synthetase [Pseudomonas putida GB-1]
          Length = 324

 Score = 62.7 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 41/266 (15%), Positives = 88/266 (33%), Gaps = 20/266 (7%)

Query: 109 VAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK------RVVDTDYSVEDKFER 162
             +  G E + R P+   ++  +   R P+ +  A          + +   + +    E 
Sbjct: 19  GVKLRGAEKVARIPV--KILPTEDVPRKPDWIRVAIPTTPEVARVKALLRKHKLHSVCEE 76

Query: 163 LSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGV 222
            +  + G     G   F+ + + C + C FC V + R   +   + +  + A  + D  +
Sbjct: 77  AACPNLGECFSGGTATFMIMGDICTRRCPFCDVGHGRPKPL--DVDEPKNLAIAIADLRL 134

Query: 223 CEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI-KGLVRLRYTTSHPRDMSDCLIKAH 281
             + +   +    R    DG    F D L  +  +  G+        +   M   L    
Sbjct: 135 KYVVITSVD----RDDLRDGGAQHFVDCLREIRALSPGIQLETLVPDYRGRMDVALAITE 190

Query: 282 GDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPG 341
                +  +    V     R+ K+            +++R +   P +   S  ++G  G
Sbjct: 191 QQPPDVFNHNLETV----PRLYKAARPGSDFEWSLDLLERFKQRVPTVPTKSGLMLGL-G 245

Query: 342 ETDDDFRATMDLVDKIGYAQAFSFKY 367
           ETD +    M  + +         +Y
Sbjct: 246 ETDAEVLEVMQRLREHQVDMLTLGQY 271


>gi|119946651|ref|YP_944331.1| lipoyl synthase [Psychromonas ingrahamii 37]
 gi|171769142|sp|A1SZ17|LIPA_PSYIN RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|119865255|gb|ABM04732.1| lipoic acid synthetase [Psychromonas ingrahamii 37]
          Length = 322

 Score = 62.7 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/207 (15%), Positives = 71/207 (34%), Gaps = 10/207 (4%)

Query: 161 ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN 220
           E  S  +       G   F+ + + C + C FC V    G  ++   ++    A  + D 
Sbjct: 70  EEASCPNLNECFNHGTATFMILGDICTRRCPFCDV--GHGKPLAVDANEPKKLAETIKDM 127

Query: 221 GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKA 280
            +  + +   +    R    DG    F+D +  +  +   +++        D    + KA
Sbjct: 128 KLKYVVITSVD----RDDLRDGGAQHFADCIREIRLLNPEIKIEILVP---DFKGRMDKA 180

Query: 281 HGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFP 340
               +  +P +       +  + K +          +++ + +   P I   S  +VG  
Sbjct: 181 LACFEQDLPDVFNHNLETAPHLYKQVRPGADYKWSLKLLQKFKEKHPHIPTKSGLMVGL- 239

Query: 341 GETDDDFRATMDLVDKIGYAQAFSFKY 367
           GET++D    +  +           +Y
Sbjct: 240 GETNEDIEQVLTDLRAHDVNMLTLGQY 266


>gi|152974529|ref|YP_001374046.1| coproporphyrinogen III oxidase [Bacillus cereus subsp. cytotoxis
           NVH 391-98]
 gi|152023281|gb|ABS21051.1| Coproporphyrinogen dehydrogenase [Bacillus cytotoxicus NVH 391-98]
          Length = 495

 Score = 62.7 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 43/247 (17%), Positives = 81/247 (32%), Gaps = 13/247 (5%)

Query: 129 GPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
           G        EL +     +  +     + D   +LS++   Y  K  V+ ++ I   C  
Sbjct: 126 GMSKEEAHKELRDSYLIDEEKIKLLQRIVD--CQLSVIPDLYRLKEEVSIYIGIPF-CPT 182

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT-- 246
            C +C  P         S+   +      I      +   G  V      G      T  
Sbjct: 183 KCAYCTFPAYAINGRQGSVDSFLGGLHYEIREIGAFLKEKGIKVTTIYYGGGTPTSITAE 242

Query: 247 -FSDLLYSLSE----IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
               L   + E    ++ +  +      P  ++   ++        +  + +  QS    
Sbjct: 243 EMDMLYEQMYESFPNVENVREVTVEAGRPDTITPEKLEVL--NKWNIDRISINPQSYHQE 300

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
            LK++ R HT  E  +     R +  +  I+ D I+G PGE  + F+ T+   +K+    
Sbjct: 301 TLKAIGRHHTVEETIEKYHLARKMGMN-NINMDLIIGLPGEGLEIFQHTLAETEKLMPES 359

Query: 362 AFSFKYS 368
                 S
Sbjct: 360 LTVHTLS 366


>gi|333027163|ref|ZP_08455227.1| putative coproporphyrinogen III oxidase [Streptomyces sp. Tu6071]
 gi|332747015|gb|EGJ77456.1| putative coproporphyrinogen III oxidase [Streptomyces sp. Tu6071]
          Length = 410

 Score = 62.7 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 47/241 (19%), Positives = 86/241 (35%), Gaps = 25/241 (10%)

Query: 186 CDKFCTFCVV-PYTRGIEI-------SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG 237
           C   C +C    YT            SR      + A  L         +LG++    R 
Sbjct: 39  CASRCGYCDFNTYTASELRGTGGVLASRD-----NYADTLAQEIRLARRVLGEDPRPART 93

Query: 238 KGLDGEKCTF---SDLLYSLSEIK---GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL 291
               G   T    +DL+  L+ ++   GL      T+     S          +     +
Sbjct: 94  VFFGGGTPTLLPAADLVRMLAAVRDEFGLAPDAEVTTEANPESVDPAYLETLREGGFNRI 153

Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351
              +QS    +L+ ++R HT       +   R+      ++ D I G PGE+D D+RA++
Sbjct: 154 SFGMQSAKPHVLRVLDRNHTPGRPEACVAEARAA-GFAHVNLDLIYGTPGESDADWRASL 212

Query: 352 DLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ-----VDENVKAERLLCLQKKLREQQVSFN 406
           +     G     ++      GT  +  + +      D++  A+R L   + L +   S+ 
Sbjct: 213 EAAVGAGPDHVSAYALIVEEGTGLARRIRRGEIPMTDDDEHADRYLIADELLAKAGFSWY 272

Query: 407 D 407
           +
Sbjct: 273 E 273


>gi|257466298|ref|ZP_05630609.1| oxygen-independent coproporphyrinogen III oxidase [Fusobacterium
           gonidiaformans ATCC 25563]
 gi|315917455|ref|ZP_07913695.1| oxygen-independent coproporphyrinogen III oxidase [Fusobacterium
           gonidiaformans ATCC 25563]
 gi|313691330|gb|EFS28165.1| oxygen-independent coproporphyrinogen III oxidase [Fusobacterium
           gonidiaformans ATCC 25563]
          Length = 348

 Score = 62.7 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 41/272 (15%), Positives = 86/272 (31%), Gaps = 34/272 (12%)

Query: 174 RGVTAFLTIQE-GCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLI----DNGVCEITLL 228
           R     + I   GC   C FC      G E    +  +    ++ +         E+   
Sbjct: 2   RHYNIPIFISHFGCPNHCVFCNQKKINGQETDIQVEDIHRIVKEYLKTLPKKSEKEVAFF 61

Query: 229 GQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLM 288
           G       G  ++ ++     L   +    G ++    ++ P  +   +++        +
Sbjct: 62  GGTFT---GLSMELQREYLEALQEYIER--GDIQGIRLSTRPDYIQKDILEQLRKYG--V 114

Query: 289 PYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFR 348
             + L +QS  + +L+  +R +T  +    I +++S      +    +VG PG + +   
Sbjct: 115 KAIELGIQSLDEEVLRRSDRFYTEKQVLSSIQQMQSY--GFEVGIQIMVGLPGSSLEKEI 172

Query: 349 ATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ-----VDENVKAERLLCL-----QKKL 398
            T+  +       A  +       T       Q     +      ER   L     Q  +
Sbjct: 173 KTIKTLIAYQPDTARIYPTLVLEDTILEKQYHQGEYQALTLEEAVERSRILYAYLEQAGI 232

Query: 399 REQQVSFNDACVGQIIEVLIEKHGKEKGKLVG 430
           R  ++               E+  KEK  + G
Sbjct: 233 RTIRLGLQAT----------EELSKEKTMVAG 254


>gi|145340617|ref|XP_001415418.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144575641|gb|ABO93710.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 408

 Score = 62.7 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 71/221 (32%), Gaps = 16/221 (7%)

Query: 186 CDKFCTFC---VVPYTRGIEISRSLSQVVDE----ARKLIDNGVCEITLLGQ-NVNAWRG 237
           C   C +C   +    R  E    +   +       R  +      +   G  + +A   
Sbjct: 11  CRSRCYYCDFAISVVGRAGETRPDVDAAMRRYGAATRAEVAATARAMRANGALDASAPLE 70

Query: 238 KGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL-------MPY 290
               G           +  I G +R  +  +   ++S  +     D + L       +  
Sbjct: 71  TVFFGGGTPSLMPADEIKAILGSLREAFGLAADAEVSAEMDPGTFDEEKLRAFLAAGVNR 130

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
           + L VQS  D +L+   R H A    + ID +R        S+D I G PG     +R +
Sbjct: 131 VSLGVQSFDDGVLQRAGRSHDARAAEEAIDTLRR-CGVPRWSADLISGLPGVDAKTWRTS 189

Query: 351 MDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERL 391
           ++ V + G      +      GT       +     K E L
Sbjct: 190 LERVIEAGADHVSVYDLQVERGTAFYRWYGENAGKDKKEGL 230


>gi|260435031|ref|ZP_05789001.1| lipoyl synthase [Synechococcus sp. WH 8109]
 gi|260412905|gb|EEX06201.1| lipoyl synthase [Synechococcus sp. WH 8109]
          Length = 289

 Score = 62.7 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/198 (16%), Positives = 63/198 (31%), Gaps = 11/198 (5%)

Query: 175 GVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA 234
           G   FL +  GC + C +C +            ++       +   G+  + +   N   
Sbjct: 48  GTATFLIMGPGCTRACPYCDI-DFDKSVRELDPTEPQRLGEAVARLGLKHVVITSVN--- 103

Query: 235 WRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP 294
            R    DG    F   +  + +   L  +           D L         ++ +    
Sbjct: 104 -RDDLGDGGASQFVACIEQVKQRSPLTTIELLIPDFCGNWDALATVMAAAPHVLNHNIET 162

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           V     R+ +    +       +++ R+R   P     S  +VG  GETD++   T+  +
Sbjct: 163 V----PRMYRLARPQGIYERSLELLQRVREQWPKAYSKSGLMVGL-GETDEEVIETLRDL 217

Query: 355 DKIGYAQAFSFKY-SPRL 371
            K         +Y SP  
Sbjct: 218 RKHKVDIVTIGQYLSPGP 235


>gi|260556747|ref|ZP_05828965.1| lipoyl synthase [Acinetobacter baumannii ATCC 19606]
 gi|260410006|gb|EEX03306.1| lipoyl synthase [Acinetobacter baumannii ATCC 19606]
          Length = 337

 Score = 62.7 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 64/208 (30%), Gaps = 12/208 (5%)

Query: 161 ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN 220
           E  +  +       G   F+ + + C + C FC V    G   +    +    A  + + 
Sbjct: 66  EEAACPNLPECFGGGTATFMIMGDICTRRCPFCDV--AHGRPNALDPDEPRHMAETIANL 123

Query: 221 GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKA 280
            +    +   +    R   LDG    F D +     +     L       R   D  ++ 
Sbjct: 124 KLKYAVITSVD----RDDLLDGGAQHFVDCIKEARALSPNTLLEILVPDFRGRMDIALRI 179

Query: 281 HGDLDVLMPYLHLPVQSGSDRIL-KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGF 339
             +     P         +   L K+M           ++   +   PDI      +VG 
Sbjct: 180 MTE----CPPDVFNHNIETVPRLYKAMRPGSDYQHSLNLLKMFKEYCPDIPTKCGLMVGI 235

Query: 340 PGETDDDFRATMDLVDKIGYAQAFSFKY 367
            GET+++  A +D +           +Y
Sbjct: 236 -GETEEEVIALLDDLRAHDVDYVTIGQY 262


>gi|296137230|ref|YP_003644472.1| lipoic acid synthetase [Thiomonas intermedia K12]
 gi|294341529|emb|CAZ89946.1| Lipoyl synthase (Lipoic acid synthase) (Lipoate synthase)
           (Lipoyl-acyl-carrier protein synthase) (Sulfur insertion
           protein lipA) (Lip-syn) [Thiomonas sp. 3As]
 gi|295797352|gb|ADG32142.1| lipoic acid synthetase [Thiomonas intermedia K12]
          Length = 321

 Score = 62.7 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 38/216 (17%), Positives = 74/216 (34%), Gaps = 12/216 (5%)

Query: 153 DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVD 212
           ++ +    E  S  + G    +G   F+ + + C + C FC V + R   +     +  +
Sbjct: 62  EHKLVTVCEEASCPNIGECFGKGTATFMIMGDKCTRRCPFCDVGHGRPDPL--DPEEPGN 119

Query: 213 EARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
            AR +    +  + +   +    R    DG    F D + +   +    ++       R 
Sbjct: 120 LARAIAAMRLRYVVITSVD----RDDLRDGGAQHFVDCIQTTRALSPTTQIEVLVPDFRG 175

Query: 273 MSDCLIKAHGD-LDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAI 331
             D  +      L  +M +    V     R+ K            +++   ++  P I  
Sbjct: 176 RLDKALDLFAAGLPDVMNHNLETV----PRLYKQARPGADYAHSLKLLADFKARYPGIPT 231

Query: 332 SSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
            S  +VG  GETDD+    M  +   G       +Y
Sbjct: 232 KSGLMVGL-GETDDEILDVMRDMRAHGIDMLTIGQY 266


>gi|237727790|ref|ZP_04558271.1| conserved hypothetical protein [Bacteroides sp. D4]
 gi|229434646|gb|EEO44723.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4]
          Length = 625

 Score = 62.7 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 48/327 (14%), Positives = 103/327 (31%), Gaps = 66/327 (20%)

Query: 111 QAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGY 170
           +   ++  +++     +      Y    +L+       VV+  Y    + E     D  Y
Sbjct: 245 ETCLKDKKKQAENFRFIEEESNKYEASRILQDVGNKTVVVNPPYPPMTQGELDRSFDLPY 304

Query: 171 NR-------KRGVTAFLTI------QEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEAR- 215
            R        + + AF  I        GC   C FC +   +G   +SRS   ++ E + 
Sbjct: 305 TRMPHPKYKGKRIPAFDMIKFSVNLHRGCFGGCAFCTISAHQGKFIVSRSKESILKEVKA 364

Query: 216 --KLIDNGVCEITLLGQNVNAWRGKGLDGEKCT----------------------FSDLL 251
             ++ D       L G + N +  +G + + C                         D+ 
Sbjct: 365 ITEMPDFKGYLSDLGGPSANMYAMRGKEEKICRRCKRPSCIHPKVCPNLNTDHRPLLDIY 424

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL----------------HLPV 295
           +S+  + G+ +          +   L++       +                     +  
Sbjct: 425 HSVDALPGIKKSFIG----SGVRYDLLQYQSKDPAVNRSTAEYTRELIANHVSGRLKVAP 480

Query: 296 QSGSDRILKSMNRR-----HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
           +  SD +L+ M +      +   +    I++  ++R  I     FI   PG T++D    
Sbjct: 481 EHTSDSVLQIMRKPSFSQFYDFKKTFDKINKELNMRQQIIPY--FISSHPGCTEEDMAEL 538

Query: 351 MDLVDKIGYAQAFSFKYSPRLGTPGSN 377
             +  K+ +       ++P   T  + 
Sbjct: 539 AVITKKLDFHLEQVQDFTPTPMTVATE 565


>gi|229062642|ref|ZP_04199951.1| Lipoyl synthase [Bacillus cereus AH603]
 gi|228716612|gb|EEL68309.1| Lipoyl synthase [Bacillus cereus AH603]
          Length = 298

 Score = 62.7 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/214 (17%), Positives = 79/214 (36%), Gaps = 13/214 (6%)

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           ++V ++ +  +I +    RK     F+ +   C + C FC V      E+   L +    
Sbjct: 37  HTVCEEAKCPNIHECWAVRK--TATFMILGAVCTRACRFCAVKTGLPTEL--DLQEPERV 92

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
           A  ++  G+  + +        R    DG    F++ + ++        +    S    +
Sbjct: 93  ADSVVQMGLKHVVITAV----ARDDLKDGGAAVFAETVRAVRRENPFTSIEVLPSDMGGV 148

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
            + L         ++ +    V+  S+R+      ++      + + R + ++PDI   S
Sbjct: 149 EENLKMLMDAKPDILNHNIETVRRLSNRV--RARAKYDRS--LEFLRRAKEMQPDIPTKS 204

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
             +VG  GET +D    MD +           +Y
Sbjct: 205 SIMVGL-GETREDLIEAMDDLRANNVDILTLGQY 237


>gi|212694067|ref|ZP_03302195.1| hypothetical protein BACDOR_03593 [Bacteroides dorei DSM 17855]
 gi|212663287|gb|EEB23861.1| hypothetical protein BACDOR_03593 [Bacteroides dorei DSM 17855]
          Length = 625

 Score = 62.7 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 48/327 (14%), Positives = 103/327 (31%), Gaps = 66/327 (20%)

Query: 111 QAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGY 170
           +   ++  +++     +      Y    +L+       VV+  Y    + E     D  Y
Sbjct: 245 ETCLKDKKKQAENFRFIEEESNKYEASRILQDVGNKTVVVNPPYPPMTQGELDRSFDLPY 304

Query: 171 NR-------KRGVTAFLTI------QEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEAR- 215
            R        + + AF  I        GC   C FC +   +G   +SRS   ++ E + 
Sbjct: 305 TRMPHPKYKGKRIPAFDMIKFSVNLHRGCFGGCAFCTISAHQGKFIVSRSKESILKEVKA 364

Query: 216 --KLIDNGVCEITLLGQNVNAWRGKGLDGEKCT----------------------FSDLL 251
             ++ D       L G + N +  +G + + C                         D+ 
Sbjct: 365 ITEMPDFKGYLSDLGGPSANMYAMRGKEEKICRRCKRPSCIHPKVCPNLNTDHRPLLDIY 424

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL----------------HLPV 295
           +S+  + G+ +          +   L++       +                     +  
Sbjct: 425 HSVDALPGIKKSFIG----SGVRYDLLQYQSKDPAVNRSTAEYTRELIANHVSGRLKVAP 480

Query: 296 QSGSDRILKSMNRR-----HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
           +  SD +L+ M +      +   +    I++  ++R  I     FI   PG T++D    
Sbjct: 481 EHTSDSVLQIMRKPSFSQFYDFKKTFDKINKELNMRQQIIPY--FISSHPGCTEEDMAEL 538

Query: 351 MDLVDKIGYAQAFSFKYSPRLGTPGSN 377
             +  K+ +       ++P   T  + 
Sbjct: 539 AVITKKLDFHLEQVQDFTPTPMTVATE 565


>gi|229816408|ref|ZP_04446712.1| hypothetical protein COLINT_03462 [Collinsella intestinalis DSM
           13280]
 gi|229808017|gb|EEP43815.1| hypothetical protein COLINT_03462 [Collinsella intestinalis DSM
           13280]
          Length = 697

 Score = 62.7 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 49/298 (16%), Positives = 99/298 (33%), Gaps = 47/298 (15%)

Query: 125 NVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGG--YNRKRGVTAFLTI 182
           + + G +     P  +   +    V  T+  +++  E          Y+   G+ AF  I
Sbjct: 231 DPITGGRLVEPYPNGVYVVQNPPSVPLTEREMDEVAELPYARHWHPDYDAAGGIPAFDEI 290

Query: 183 ------QEGCDKFCTFCVVPYTRGIEIS-RSLSQVVDEARK-LIDNGVCEIT--LLGQNV 232
                   GC   C+FC + + +G  +  RS   ++ EA +   D         + G   
Sbjct: 291 RFSISSNRGCFGECSFCALAFHQGRMVQVRSRESIMREAEELTHDPEFKGYINDVGGPTA 350

Query: 233 NAWR----------------------GKGLDGEKCTFSDLLYSLSEIKGLVR------LR 264
           N ++                       + +D  +  +++LL  L +I G+ +      +R
Sbjct: 351 NFFKPACKKQLTHGVCKNRRCLWPDVCRNMDTNEDAYAELLRDLRQIPGVKKVFVRSGIR 410

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +  +        L++       +   L L  +  SD +L  M +      Y   ++R   
Sbjct: 411 FDYTMADASDKFLVELLQHH--VSGQLRLAPEHVSDAVLSVMGKP-RREVYDAFVERFER 467

Query: 325 VRPDIAISSD----FIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           +  +  +        I   PG T  +     + V  +GY       + P   T  + M
Sbjct: 468 LSAEYGLKQYVVPYLISSHPGSTMKEAVELAEAVRDMGYMPEQVQDFYPTPSTMSTCM 525


>gi|189461462|ref|ZP_03010247.1| hypothetical protein BACCOP_02118 [Bacteroides coprocola DSM 17136]
 gi|189431796|gb|EDV00781.1| hypothetical protein BACCOP_02118 [Bacteroides coprocola DSM 17136]
          Length = 384

 Score = 62.7 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 43/233 (18%), Positives = 89/233 (38%), Gaps = 20/233 (8%)

Query: 186 CDKFCTFCVV-PYTRGIEISRSLSQVVDEARKLID----NGVCEITLLGQNVNAWRGKGL 240
           C + C +C     T+  + S  ++ +  E  +  +      +  I L G   +    K  
Sbjct: 19  CKRRCIYCDFYSTTQNEKKSSYINALCRELEERKNYLEGEKIETIYLGGGTPSQLEYKDF 78

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300
           +         L  L +I+    +    ++P D++   +    +       L + +Q+  +
Sbjct: 79  E----LIFQTLGRLYDIQPNAEITIE-ANPDDLTSSYVSMLREFP--FNRLSMGIQTFQE 131

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSV-RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
            IL+ ++RRHTA +     +R R     +I+I  D + G PGE+   + + ++   ++  
Sbjct: 132 DILRLLHRRHTAQQAIDAFERCRKAGFKNISI--DLMYGLPGESMQTWESDLNQAIRMKP 189

Query: 360 AQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLC-----LQKKLREQQVSFND 407
               ++      GT    + EQ       E L       L  KL+E+     +
Sbjct: 190 EHISAYHLIYEEGTALWKLREQHRMEEADEELSVSLFTLLIHKLKEKGYQHYE 242


>gi|168703028|ref|ZP_02735305.1| radical SAM domain protein [Gemmata obscuriglobus UQM 2246]
          Length = 687

 Score = 62.7 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 42/261 (16%), Positives = 80/261 (30%), Gaps = 42/261 (16%)

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SR 205
           +  +D  Y +                   +   +TI  GC   CTFC +   +G  I SR
Sbjct: 291 REEMDAVYDLPYNRRPHPSYTEPVPAHEMIKDSVTILRGCFGGCTFCSITAHQGRIIQSR 350

Query: 206 SLSQVVDEARKLIDN---------------------------GVCEITLLGQNVNAWRGK 238
           S   V+ E  KL  +                                 L   +    +  
Sbjct: 351 SPESVLREVEKLAADPDFKGIISDIGGATANMYTMRCTLPEVEAKCKRLSCVHPTVCKLL 410

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTT---SHPRDMSDCLIKAHGDLDVLMPYLHLPV 295
           G D       +L+  + E +G+ ++  ++        +S   ++   +       L +  
Sbjct: 411 GTDHGP--LIELMREVRETEGVRKVLVSSGIRMDLAQLSPEYVRELAEH-HTGGRLKVAP 467

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA-----ISSDFIVGFPGETDDDFRAT 350
           +  S ++L++M +      +    ++ R    D       I   FI   PG    +    
Sbjct: 468 EHTSPKVLEAMKKP-DIDNFGVFAEQFRQASADAGKPKQQIVPYFIASHPGSDLAEMIDL 526

Query: 351 MDLVDKIGY--AQAFSFKYSP 369
              + + GY   Q   F  +P
Sbjct: 527 ALYLKQNGYRPDQVQDFIPAP 547


>gi|70729294|ref|YP_259031.1| coproporphyrinogen III oxidase [Pseudomonas fluorescens Pf-5]
 gi|68343593|gb|AAY91199.1| oxygen-independent coproporphyrinogen III oxidase [Pseudomonas
           fluorescens Pf-5]
          Length = 460

 Score = 62.7 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 43/267 (16%), Positives = 92/267 (34%), Gaps = 29/267 (10%)

Query: 160 FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR------SLSQVVDE 213
           F+ L  +      +R ++ ++ I   C   C +C        + SR       L Q +  
Sbjct: 38  FDLLHALRDSRKAQRPLSLYVHIPF-CANICYYCACNKVITKDRSRALPYLQRLEQEMQL 96

Query: 214 ARKLID--NGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPR 271
               +     V ++   G          L             L +  G   +        
Sbjct: 97  IACHLAPNQRVEQLHFGGGTPTFLNHDELRQLMALLRKHFNLLDDDSGDYGIEIDPREAD 156

Query: 272 DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAI 331
             +  L++  G        + + +Q     + +++NR  +  E R +I+  R+++   +I
Sbjct: 157 WSTMGLLRELG-----FNRVSIGLQDLDPAVQRAVNRLQSLDETRAVIEAARTLQFR-SI 210

Query: 332 SSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ-------VDE 384
           + D I G P +T ++F  T++ V  +   +   F Y+          + Q       +  
Sbjct: 211 NIDLIYGLPKQTPENFARTVEEVISLQPDRLSVFNYAHLP----ERFMPQRRINGSELPA 266

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVG 411
              AE+L  LQ+ + +   +     +G
Sbjct: 267 P--AEKLQMLQRTIEQLTAAGY-RYIG 290


>gi|16272001|ref|NP_438199.1| lipoyl synthase [Haemophilus influenzae Rd KW20]
 gi|145630682|ref|ZP_01786461.1| lipoyl synthase [Haemophilus influenzae R3021]
 gi|145639685|ref|ZP_01795288.1| lipoyl synthase [Haemophilus influenzae PittII]
 gi|260580670|ref|ZP_05848497.1| lipoyl synthase [Haemophilus influenzae RdAW]
 gi|1170789|sp|P44463|LIPA_HAEIN RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|1572971|gb|AAC21704.1| lipoate biosynthesis protein A (lipA) [Haemophilus influenzae Rd
           KW20]
 gi|144983808|gb|EDJ91258.1| lipoyl synthase [Haemophilus influenzae R3021]
 gi|145271242|gb|EDK11156.1| lipoyl synthase [Haemophilus influenzae PittII]
 gi|260092732|gb|EEW76668.1| lipoyl synthase [Haemophilus influenzae RdAW]
 gi|309750655|gb|ADO80639.1| Lipoate biosynthesis protein A [Haemophilus influenzae R2866]
          Length = 320

 Score = 62.7 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/214 (15%), Positives = 71/214 (33%), Gaps = 10/214 (4%)

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           + +    E  S  +       G   F+ +   C + C FC V    G  +     +    
Sbjct: 61  HGLHSVCEEASCPNLHECFNHGTATFMILGAICTRRCPFCDV--AHGKPLPPDPEEPQKL 118

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
           A  + D  +  + +   +    R    D     FS+ + ++ E+   +++       R  
Sbjct: 119 AETIQDMKLKYVVITSVD----RDDLPDRGAGHFSECVKAVRELNPNIKIEILVPDFRGR 174

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
               ++   D     P +         R+ K +          +++   + + P+I   S
Sbjct: 175 ITQALEKLKDNP---PDVFNHNLENVPRLYKEIRPGADYEWSLKLLREFKEIFPNIPTKS 231

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
             +VG  GET+++    M  +   G       +Y
Sbjct: 232 GLMVGL-GETNEEILQVMQDLRDNGVTMLTLGQY 264


>gi|260891027|ref|ZP_05902290.1| Fe-S protein, radical SAM family [Leptotrichia hofstadii F0254]
 gi|260859054|gb|EEX73554.1| Fe-S protein, radical SAM family [Leptotrichia hofstadii F0254]
          Length = 455

 Score = 62.7 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 57/336 (16%), Positives = 108/336 (32%), Gaps = 31/336 (9%)

Query: 48  FFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAG 107
              Q  E++N  D+ DL+++                    R+ K +         VV+ G
Sbjct: 46  LQDQHVEKLNLEDNPDLVII------------QVYITNAYRSYKLADYYRKKGSYVVLGG 93

Query: 108 CVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVD 167
               +  EE L  +    +++GP        L +      + +             +  D
Sbjct: 94  LHVTSLPEEALEHAD--TIMIGPGEDIFPKFLQDFKNRNPQKMYISTHRTLIGAPPARRD 151

Query: 168 GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITL 227
                K  V   + +  GC   C FC          S     V D  +++       +  
Sbjct: 152 LIKRNKYLVPNSIVVTRGCPHHCDFCYKDAFYQNGKSFYTQLVDDALKEIDRLPGRHLYF 211

Query: 228 LGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM-SDCLIKAHGDLDV 286
           L  ++         G     ++L   +   KG+ RL    +    + +  LI+       
Sbjct: 212 LDDHLL--------GNPKFATELFEGM---KGMNRLFQGAATVDSILTGDLIEKAAQAG- 259

Query: 287 LMPYLHLPVQSGSDRILKSMNRRHT-AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDD 345
            +  L +  ++ S   LK  N+       Y   + R+ S+   I I+  F+ G   +  D
Sbjct: 260 -LRSLFVGFETFSPENLKFSNKNQNLKRNYENAVKRLHSL--GIMINGSFVFGLDYDDKD 316

Query: 346 DFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
            F+ T++   K     +     +P  GT     +E 
Sbjct: 317 VFKRTVEWGVKNAITTSTYHILTPYPGTRLFKRMED 352


>gi|196230554|ref|ZP_03129416.1| Coproporphyrinogen dehydrogenase [Chthoniobacter flavus Ellin428]
 gi|196225484|gb|EDY19992.1| Coproporphyrinogen dehydrogenase [Chthoniobacter flavus Ellin428]
          Length = 478

 Score = 62.7 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 47/237 (19%), Positives = 87/237 (36%), Gaps = 22/237 (9%)

Query: 175 GVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA 234
           G+ A +     C+  C+FC             + +  +   + +D    E+  +      
Sbjct: 64  GIYAHIPF---CNYACSFC----FYAK----RIGETRETMARYVDALEKELAWIPPGTPL 112

Query: 235 WRGKGLDGEKCTF--SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY-- 290
            +     G         L  +L+ I   V     T       D L  AH  +DVL+ +  
Sbjct: 113 TQLFVGGGTPTALPPELLDRTLTAIFRHVVRGPITHTVECSPDSLTDAH--IDVLLRHQI 170

Query: 291 --LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFR 348
             + + +QS  D +L  + R+H          ++  V   + ++ D I G PG+T++ FR
Sbjct: 171 GRVSMGIQSTHDEVLDHIRRKHAGEVALATCAKL--VSCGLMVNVDLIYGLPGQTEEHFR 228

Query: 349 ATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSF 405
             + LV   G     ++       TP +  L + DE +   RL+  +  +R      
Sbjct: 229 RDLQLVSASGAHSITAYNLRVNERTPVAQKLGE-DERLGPHRLIRWRAFVRHTATEL 284


>gi|113952719|ref|YP_731740.1| radical SAM domain/B12 binding domain-containing protein
           [Synechococcus sp. CC9311]
 gi|113880070|gb|ABI45028.1| radical SAM domain/ B12 binding domain protein [Synechococcus sp.
           CC9311]
          Length = 540

 Score = 62.7 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 66/361 (18%), Positives = 126/361 (34%), Gaps = 63/361 (17%)

Query: 62  ADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRS 121
           A+L+V++   ++    + +   +   R            + V V G  A +  +      
Sbjct: 82  AELVVISGMIVQ---KDDMKQQINEARR---------RGIPVAVGGPYASSTPD--APEI 127

Query: 122 PIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAF-- 179
              +  +  +    LP  +E  + G       +S E +   ++           + A+  
Sbjct: 128 ADADFKILDEGEITLPLFIEAIQRGDS--SGRFSAEGEKPDVTSTPIPRFDLLQLEAYDS 185

Query: 180 --LTIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR 236
             +    GC   C FC +    G +  +++  Q++ E + L D G      L  +     
Sbjct: 186 MSVQFSRGCPFNCEFCDIIVLYGRKPRTKTPEQLIAELQSLYDLGWRRSIFLVDD----- 240

Query: 237 GKGLDGEKCTFSDLLYSLSEIKGLVRLR-YTTSHPRDMSDCLIKAHGDLDVLMPYLH--- 292
                G K     L   L EIK     R Y  S   + S  L     D D +M  +H   
Sbjct: 241 --NFIGNKRNAKLL---LPEIKAWQEHRGYPFSFATEASVDL----ADDDEMMRMMHEAR 291

Query: 293 -----LPVQSGSDRILKSMNR-RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDD 346
                L +++  +  L+   + ++T       +DRI +    I + + FI+GF GE D  
Sbjct: 292 FESVFLGIETPDEASLEVARKVQNTRNPLDAAVDRITAN--GIRVMAGFIIGFDGEKDGA 349

Query: 347 FRATMDLVDKIGYAQAFSFKYSPRLGTPGS--NMLEQVDENVKAERLLCLQKKLREQQVS 404
               +D V               R G P +   ML+ + +     RL    + ++++  +
Sbjct: 350 GLRIVDFVT--------------RTGIPAAMMGMLQALPQTALWHRLEKEGRLIQDESAA 395

Query: 405 F 405
            
Sbjct: 396 K 396


>gi|114564114|ref|YP_751628.1| putative radical SAM protein [Shewanella frigidimarina NCIMB 400]
 gi|114335407|gb|ABI72789.1| conserved hypothetical radical SAM protein [Shewanella
           frigidimarina NCIMB 400]
          Length = 322

 Score = 62.7 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 47/240 (19%), Positives = 83/240 (34%), Gaps = 39/240 (16%)

Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-----------R 236
             CTFC V    G E  R     +      +     +      NVN+             
Sbjct: 43  GGCTFCNVASFSG-EQGREQPIALQLTEGKVRALSAKKCTTSVNVNSTPTAKYIAYFQAY 101

Query: 237 GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL--DVLMPYLHLP 294
               D  K        +L +   +V L   T  P  + D ++    +     +  +L L 
Sbjct: 102 TSTYDEYKVLKQKYDQALEDAD-IVGLHIGT-RPDCVPDEVLDLLVEYQQRGIEVWLELG 159

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           +Q+ ++  LK +NR H   EYRQ + + R+    I + +  I+G PGET  D+  ++  V
Sbjct: 160 LQTANNHTLKRINRGHQLCEYRQTVKKARAK--GIKVCTHLILGLPGETSADYFNSLQTV 217

Query: 355 DKIGYA--------------QAFSFKYSPRL-------GTPGSNMLEQVDENVKAERLLC 393
             IG                 A  ++Y P          +  + ++    + +   R+  
Sbjct: 218 LGIGVDGLKLHPLHIVEGSIMAKQWRYHPMPLMSLEEYASEAAKLIRHTPKEIIFHRVTA 277


>gi|329766643|ref|ZP_08258186.1| Fe-S oxidoreductase [Candidatus Nitrosoarchaeum limnia SFB1]
 gi|329136898|gb|EGG41191.1| Fe-S oxidoreductase [Candidatus Nitrosoarchaeum limnia SFB1]
          Length = 679

 Score = 62.7 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 45/254 (17%), Positives = 95/254 (37%), Gaps = 30/254 (11%)

Query: 176 VTAFLTIQEGCDKFCTFCV-----VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQ 230
           +T  +    GC   CTFC      V       ++R   + +D   K +      + +   
Sbjct: 199 LTPMIQTNRGCPFHCTFCTDGKDEVNQVNMFSLNRVRDE-LDYIVKHVPKNTPSLHISDL 257

Query: 231 NVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR--YTTSHPRDMSDCLIKAHGDLDVLM 288
           N   ++            ++   L++++           +  ++  + +IKA   L   +
Sbjct: 258 NFGMYQRD---------QEICEELAKMQEKANYPQFIKCTTGKNQREKIIKAIRKLSNSL 308

Query: 289 PYLHLPVQSGSDRILKSMNRRH-TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDF 347
             + + VQS  D++L ++ R + +  +   +   I+     +  +S+ I+G PGET  + 
Sbjct: 309 R-ITMSVQSLDDQVLTNIRRSNISVDQMLDLYPAIKES--GLQTTSEVILGLPGETYQNH 365

Query: 348 RATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFND 407
             T+  + +    +          G   S M  +  + ++      L+ K R  Q  F  
Sbjct: 366 IETLRGLVRARMDEIVVHTCMLLDG---SEM--KTPKEIEK---WNLKTKFRVIQRDFAK 417

Query: 408 ACVGQIIEVLIEKH 421
              G+ I V IE+ 
Sbjct: 418 LSNGKNI-VEIEEV 430


>gi|115376836|ref|ZP_01464059.1| radical SAM [Stigmatella aurantiaca DW4/3-1]
 gi|310820154|ref|YP_003952512.1| radical sam domain-containing protein [Stigmatella aurantiaca
           DW4/3-1]
 gi|115366139|gb|EAU65151.1| radical SAM [Stigmatella aurantiaca DW4/3-1]
 gi|309393226|gb|ADO70685.1| Radical SAM domain protein [Stigmatella aurantiaca DW4/3-1]
          Length = 636

 Score = 62.7 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 58/317 (18%), Positives = 97/317 (30%), Gaps = 49/317 (15%)

Query: 129 GPQTYYRLPELL---ERARFGKRVVDTDYSVEDKFERLSIV---DGGYNRKRGVTAFLTI 182
           G +  +  P  L   +    G   V  D   +  F R+      + G      V   + +
Sbjct: 270 GNRAIFMNPPALPLEDGVGSGADAVAMDEMYDLPFNRVPHPMYKNEGIPAYETVKHSVVL 329

Query: 183 QEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDNGVCEITLL---GQNVNAWR-- 236
             GC   CTFC +    G  I SRS   V+ E R L   G    T+    G   N ++  
Sbjct: 330 MRGCFGGCTFCSITEHEGRVIQSRSAESVLREVRALRRMGDFRGTITDLGGPTANMYKLK 389

Query: 237 --------------------GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT---SHPRDM 273
                                + L  +     DL+  + + +G+  +   +       + 
Sbjct: 390 CKSEDIEKKCRKLSCVHPGVCENLQTDHGPLIDLMREVRQEEGIKHVFIASGVRYDLAER 449

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
           S   +K       +   L +  +  S R+L+ M +      + +          +     
Sbjct: 450 SPEYVKELAAH-HVGGQLSVAPEHVSPRVLEKMKKPG-IESFERFQTMFACASEEAGKEQ 507

Query: 334 D----FIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAE 389
                FI G PG T +D       + K G        + P      + M     + +K E
Sbjct: 508 YDIPYFISGHPGSTLEDMVDLALWLKKNGKRPRQVQDFIPTPMAVATTMYYTGIDPLKME 567

Query: 390 --------RLLCLQKKL 398
                   R   LQK L
Sbjct: 568 PVYTARGLREKRLQKAL 584


>gi|210609778|ref|ZP_03288110.1| hypothetical protein CLONEX_00294 [Clostridium nexile DSM 1787]
 gi|210152780|gb|EEA83786.1| hypothetical protein CLONEX_00294 [Clostridium nexile DSM 1787]
          Length = 383

 Score = 62.7 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/217 (15%), Positives = 73/217 (33%), Gaps = 16/217 (7%)

Query: 186 CDKFCTFC--VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
           C + C +C  +     G  I   +  ++ E +      + +I +   N+    G     E
Sbjct: 14  CVRKCAYCDFLSSPENGETIENYVEALIREIKAYQALSLNDIVV---NIFLGGGTPSVLE 70

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
                 +  +L E+  +      T      +    K      + +  +   +QS  +  L
Sbjct: 71  GNQMERIFEALHEVFEIAEDAEITVEANPGTVTQEKLSAYRKLGINRISFGLQSADNGEL 130

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIA-ISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           K + R HT  ++ +  +  R+       I+ D I   P +T   +  T+  + ++     
Sbjct: 131 KLLGRIHTYEQFLESYEMARTA--GFTNINIDLISAIPKQTVRSWEETLKRIIRLKPEHI 188

Query: 363 FSFKYSPRLGTPGSNMLE-------QVDENVKAERLL 392
            ++      GT  + +          +      ERL+
Sbjct: 189 SAYSLIIEEGTSFAKLYGEGSPLERDLPSEE-EERLM 224


>gi|15615997|ref|NP_244302.1| lipoyl synthase [Bacillus halodurans C-125]
 gi|20138750|sp|Q9K7C9|LIPA_BACHD RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|10176058|dbj|BAB07154.1| lipoic acid synthetase [Bacillus halodurans C-125]
          Length = 303

 Score = 62.7 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 38/214 (17%), Positives = 76/214 (35%), Gaps = 13/214 (6%)

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           ++V ++ +  +I +    RK     F+ + + C + C FC V      E+   L +    
Sbjct: 37  HTVCEEAKCPNIHECWAVRK--TATFMILGDVCTRACRFCAVKTGLPNEL--DLQEPERV 92

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
           A  +   G+    +        R    DG    F++ + ++        +    S     
Sbjct: 93  AESVEIMGLKHAVITAV----ARDDLKDGGAGVFAETVRAVRRRNPFCTIEVLPSDMMGN 148

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
            D L         ++ +    V+  +      +  R T     + + R + ++PDI   S
Sbjct: 149 DDNLKTLMDARPNILNHNIETVRRLTP----RVRARATYERSLEFLRRAKEMQPDIPTKS 204

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
             ++G  GET D+   TMD +           +Y
Sbjct: 205 SLMIGL-GETKDEIIETMDDLRANNVDIMTIGQY 237


>gi|254495183|ref|ZP_05108107.1| conserved hypothetical protein [Polaribacter sp. MED152]
 gi|85819535|gb|EAQ40692.1| conserved hypothetical protein [Polaribacter sp. MED152]
          Length = 654

 Score = 62.7 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 52/307 (16%), Positives = 103/307 (33%), Gaps = 57/307 (18%)

Query: 126 VVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNR--------KRGVT 177
           V+       +   +L+  +    V++  +    + E     D  Y R        +  + 
Sbjct: 248 VIEQESNKLKARRILQDVKGKTLVINPPFPTMTEKEIDGSFDLPYTRLPHPKYDKRGPIP 307

Query: 178 AF------LTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDNGVCEITLL-- 228
           AF      + I  GC   C+FC +   +G  I SRS   V+ E  K+ +    +  L   
Sbjct: 308 AFEMIKFSINIHRGCFGGCSFCTISAHQGKFIASRSQESVLREVDKVANMPDFKGYLSDI 367

Query: 229 -GQNVNAWRGKG----------------------LDGEKCTFSDLLYSLSEIKGLVRLRY 265
            G + N ++ KG                      LD      +DL  ++ +   + +   
Sbjct: 368 GGPSANMYQMKGKVQSICDKCVAPSCISPVICSNLDTSHKPLTDLYQAVDKHPKIKKSFI 427

Query: 266 TTSHPRDM---------SDCLIKAHGDL---DVLMPYLHLPVQSGSDRILKSMNRR--HT 311
            +    DM             + A+ +      +   L +  +  SD +LK M +     
Sbjct: 428 GSGIRHDMLVPEFNKNADPKELDAYTEEVMTKHVSGRLKVAPEHTSDPVLKLMRKPSFTY 487

Query: 312 AYEYRQIIDRI--RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369
            +++++  DRI  R    ++ +   FI   P    +D          +G+       ++P
Sbjct: 488 FHKFKERFDRINIRKKL-NLQLIPYFISSHPASEVEDMANLAAETKNMGFQLEQVQGFTP 546

Query: 370 RLGTPGS 376
              T  +
Sbjct: 547 TPMTVAT 553


>gi|237724830|ref|ZP_04555311.1| Fe-S oxidoreductase family 2 [Bacteroides sp. D4]
 gi|265754765|ref|ZP_06089817.1| Fe-S oxidoreductase family 2 [Bacteroides sp. 3_1_33FAA]
 gi|229436568|gb|EEO46645.1| Fe-S oxidoreductase family 2 [Bacteroides dorei 5_1_36/D4]
 gi|263234879|gb|EEZ20447.1| Fe-S oxidoreductase family 2 [Bacteroides sp. 3_1_33FAA]
          Length = 545

 Score = 62.7 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 58/358 (16%), Positives = 111/358 (31%), Gaps = 52/358 (14%)

Query: 45  EDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVV 104
             M   + Y     +  A   + N         E++     R++ L            +V
Sbjct: 45  AGMIVDEIYHHQPDILAATTWLFN--------HEQLIHVASRVKAL-------LPKTCLV 89

Query: 105 VAGCVAQAEGEEILRRSPIVNVVV----------------GPQTYYRLPELLERARFGKR 148
           + G     + EE LR++P V+ V                  P+ ++ +P L     + + 
Sbjct: 90  LGGPEFLGDNEEFLRKNPFVDCVFRGEGEEVFPQWLTCWNHPEQWHTVPGLCYLTPYKEY 149

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
             +    V +    +      +         L    GC   C FC V        + S+ 
Sbjct: 150 KDNGIARVLNFAGLVPPEQSRFFNWSKPFVQLETTRGCFNTCAFC-VSGGEKPVRTLSIE 208

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
            +    + +  +G+  + +L +  N               +LL    E    +R      
Sbjct: 209 SIRRRLQLIHAHGIKNVRVLDRTFNY--------NPRRAKELLRLFLEFHPDIRFHLE-I 259

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
           HP  +S+ L +    L   + +L   +QS  + +L+   R     +    + R     P+
Sbjct: 260 HPALLSEELKEELSLLPKGLLHLEAGIQSLREPVLEKSRRMGKLSDALDGL-RFLCALPN 318

Query: 329 IAISSDFIVGFP----GETDDDFRATMDLVD-KIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +   +D I G P     E  +D R   +    +I              GT      E+
Sbjct: 319 METHADLIAGLPLYHLHEIFEDVRTLAEYAAGEIQLESLKL-----LPGTEMRRRAEE 371


>gi|28897490|ref|NP_797095.1| lipoyl synthase [Vibrio parahaemolyticus RIMD 2210633]
 gi|260876432|ref|ZP_05888787.1| lipoyl synthase [Vibrio parahaemolyticus AN-5034]
 gi|31340194|sp|Q87RR1|LIPA_VIBPA RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|28805702|dbj|BAC58979.1| lipoic acid synthetase [Vibrio parahaemolyticus RIMD 2210633]
 gi|308091618|gb|EFO41313.1| lipoyl synthase [Vibrio parahaemolyticus AN-5034]
          Length = 321

 Score = 62.7 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/182 (15%), Positives = 61/182 (33%), Gaps = 10/182 (5%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V    G  +     +    AR + D  +  + +   +    R    DG   
Sbjct: 94  CTRRCPFCDV--AHGRPLPPEAEEPQKLARTIADMKLKYVVITSVD----RDDLRDGGAQ 147

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
            F+D    + E+   +++       R   D  +    D     P +       + R+ + 
Sbjct: 148 HFADCNREIRELNPDIKIETLVPDFRGRMDVALDLMKDNP---PDVFNHNLETAPRLYRK 204

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
                      +++ + +   PD+   S  ++G  GET ++    +  +   G       
Sbjct: 205 ARPGANYKWSLELLKKFKEQHPDVPTKSGLMMGL-GETKEEIIEVLKDLRAHGVTMLTLG 263

Query: 366 KY 367
           +Y
Sbjct: 264 QY 265


>gi|289523387|ref|ZP_06440241.1| radical SAM domain protein [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
 gi|289503079|gb|EFD24243.1| radical SAM domain protein [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
          Length = 599

 Score = 62.7 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 40/245 (16%), Positives = 78/245 (31%), Gaps = 29/245 (11%)

Query: 177 TAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAW 235
            A + +  GC + C FC           R   +V + A K++   G  E+ L   +   +
Sbjct: 246 RASVEVFRGCTRGCRFCQAGMIYRPVRYRDPERVCELANKILSQSGYEELGLTSLSTCDY 305

Query: 236 RGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPV 295
                        + +  L  +    R   +    R     +  A    ++    L    
Sbjct: 306 ---------PWLEETMDRLGPLLFEYRAALSLPSLRMDPKAIDVALKLEEMKRRGLTFAP 356

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
           ++GS R+   +N+  T  +    +  +        +   F++G P ET+ D R  +D++ 
Sbjct: 357 EAGSQRLRNVINKGVTEKDIENTLKAVFEAGWS-KVKLYFMMGLPTETEKDLRGIVDIIG 415

Query: 356 KIGY----------AQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSF 405
              +            A    + P+  TP         +     R+  L  K    +  F
Sbjct: 416 MARFLGRSYNKRTSVSASIAGFVPKAHTPF--------QWEAQNRMEELMDKGLWIKRQF 467

Query: 406 NDACV 410
               V
Sbjct: 468 RQKNV 472


>gi|289432248|ref|YP_003462121.1| radical SAM protein [Dehalococcoides sp. GT]
 gi|288945968|gb|ADC73665.1| Radical SAM domain protein [Dehalococcoides sp. GT]
          Length = 544

 Score = 62.7 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 50/313 (15%), Positives = 105/313 (33%), Gaps = 37/313 (11%)

Query: 116 EILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVD-------- 167
           E     P +  V+          +LER      +       E   ER+   +        
Sbjct: 166 EAEAILPELLAVLSETAGESKGLILERLAKIPGLYVPSIPPEQPVERVFPSELTQGVGTA 225

Query: 168 -GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEIT 226
                 + G    + ++ GC   C FC+V           L  ++ +A + +      I 
Sbjct: 226 VFSTATELGEMYLMEVERGCGHQCRFCLVAGVFCPLRYHPLELLLKQAEEGMLK-RKRIG 284

Query: 227 LLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV 286
           L+G  V+         +    ++L+  L  +     L  ++   + +S+ ++        
Sbjct: 285 LVGPVVS---------DHPQVTELVSRLRNMG--FGLSVSSLRIKPLSEKMLDELALSG- 332

Query: 287 LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA-ISSDFIVGFPGETDD 345
            +  L +  ++GS+R+ + + +  T  +  +    +         +   F++G PGE D+
Sbjct: 333 -VSSLAMAPEAGSERLRRIIRKGITEDDIIRAAALVAEK--GFRQLKFYFMLGLPGEADE 389

Query: 346 DFRATMDLVDKIGYA----------QAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQ 395
           D    + L +K   A                + P+  TP    L   D  +   RL  ++
Sbjct: 390 DVEEMIVLAEKAQQAMSSKGRGVRLSLNIAPFVPKPATP-FQWLGMEDAALIKRRLDTIR 448

Query: 396 KKLREQQVSFNDA 408
            +L  Q +     
Sbjct: 449 LRLEGQGIEVRAE 461


>gi|270265258|ref|ZP_06193520.1| oxygen-independent coproporphyrinogen III oxidase [Serratia
           odorifera 4Rx13]
 gi|270040892|gb|EFA13994.1| oxygen-independent coproporphyrinogen III oxidase [Serratia
           odorifera 4Rx13]
          Length = 457

 Score = 62.7 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 43/247 (17%), Positives = 89/247 (36%), Gaps = 18/247 (7%)

Query: 173 KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNV 232
           +R ++ ++ I   C K C FC         ++R   +  +    L         L     
Sbjct: 50  ERPLSLYVHIPF-CHKLCYFC----GCNKLVTRQTHKADEYLAVLAREIAERAPLFA--- 101

Query: 233 NAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL----- 287
               G+   G           +S +  ++R  +      +MS  +     +LDVL     
Sbjct: 102 GRKVGQMHWGGGTPTYLSKSQISRLTAMLRQHFDFLPDAEMSIEVDPREIELDVLDHLRS 161

Query: 288 --MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDD 345
                L + VQ  +  + + +NR         +I R +++  + + + D I G P +T +
Sbjct: 162 EGFNRLSMGVQDFNKEVQRLVNREQDEEFIFALIARAKALGFN-STNIDLIYGLPKQTPE 220

Query: 346 DFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVS 404
            F  T++ V ++   +   F Y+       +   ++  D     ++L  LQ+ +     S
Sbjct: 221 SFAFTLERVAELNPDRLSVFNYAHLPSLFAAQRKIKDADLPSAQQKLDILQQTIASLTES 280

Query: 405 FNDACVG 411
                +G
Sbjct: 281 GYQ-FIG 286


>gi|320006775|gb|ADW01625.1| cobalamin B12-binding domain protein [Streptomyces flavogriseus
           ATCC 33331]
          Length = 467

 Score = 62.7 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 35/236 (14%), Positives = 79/236 (33%), Gaps = 18/236 (7%)

Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           LER R  +     D  + D+          ++      + +    GC   C FC +    
Sbjct: 152 LERDRRPRPAALNDLPMPDRSLLAHHRQDYFHSIYRPVSLIRFTAGCPYTCKFCSLWRMT 211

Query: 200 -GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258
               + + + +V+ E             + GQN+          +     +L  ++ +  
Sbjct: 212 DRRYLVKDIDRVLAEIDD----------IEGQNL-YVVDDEAFIQPARMLELADAIDKAG 260

Query: 259 GLVRLR-YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
              R   Y  +        +I    ++   +  + +  +S +D  L    +   A + R+
Sbjct: 261 FRKRFHMYIRTDTALRRPDVIARWAEIG--LDSVLVGAESMTDDELSGYRKGTDADQTRR 318

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
            +D   +    + + ++FIV  P    +DF      ++++          +P  GT
Sbjct: 319 ALDLFHTN--QVKVRANFIV-QPNWVGEDFARLGRTIEELQVDMPSFSVLTPLPGT 371


>gi|269792377|ref|YP_003317281.1| oxygen-independent coproporphyrinogen III oxidase
           [Thermanaerovibrio acidaminovorans DSM 6589]
 gi|269100012|gb|ACZ18999.1| oxygen-independent coproporphyrinogen III oxidase
           [Thermanaerovibrio acidaminovorans DSM 6589]
          Length = 366

 Score = 62.7 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 41/217 (18%), Positives = 90/217 (41%), Gaps = 10/217 (4%)

Query: 173 KRGVTAFLTIQEGCDKFCTFCVVPYT-RGIEISRSLSQVVDEARKLIDNGVCEITLLGQN 231
           +RG++ ++ +   C + C +C  P    G          ++   K + +   ++     +
Sbjct: 3   ERGISIYVHVPF-CTRKCLYCSFPSAPMGK---GDQEAYLEGLSKEMGSWSRQLRRPRVH 58

Query: 232 VNAWRGKGL-DGEKCTFSDLLYSLSEIKGL--VRLRYTTSHPRDMSDCLIKAHGDLDVLM 288
              + G          +  L+  L +   L  VR     ++P  +   L+K   ++    
Sbjct: 59  TIYFGGGTPSKLSPGGWERLMGDLGQSFDLSGVREITFEANPESLGVDLLKCWTEVSPGP 118

Query: 289 PYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFR 348
             + L VQS  DR L+ + R HTA +  +  + +  +R  I +S D +   PG++  DF 
Sbjct: 119 LRVSLGVQSFLDRELRRLGRVHTASDAVRASEMV--LRAGIPLSVDLMFRLPGQSLRDFS 176

Query: 349 ATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            ++ +   +G     +++ +   GTP  +M  ++  +
Sbjct: 177 YSLKMAVGLGVDHLSAYELTVEEGTPFGDMDLELPPD 213


>gi|312890527|ref|ZP_07750063.1| Radical SAM domain protein [Mucilaginibacter paludis DSM 18603]
 gi|311296985|gb|EFQ74118.1| Radical SAM domain protein [Mucilaginibacter paludis DSM 18603]
          Length = 499

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 54/339 (15%), Positives = 110/339 (32%), Gaps = 55/339 (16%)

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           L +   +  +  ++  +  ++  G        +++  S  V+ ++     +  P+LL+  
Sbjct: 72  LRQAIPIAKAVKQQFKETTMIWGGYFPS-NHSKVVLDSGYVDFIINGPGDHCFPKLLDAL 130

Query: 144 RF---------------GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFL-------- 180
                            G+ V +    + D+     +     NR   +  +L        
Sbjct: 131 ENFLPYEFIKNLIYKANGQIVKNAKEDLIDQDALPPLPYSKLNRFYPMEKYLGKTYLGER 190

Query: 181 TIQE----GCDKFCTFC-VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW 235
           T       GC   C+FC VVP       ++S   V  + +            +  N  A 
Sbjct: 191 TFAYHSSIGCPFTCSFCAVVPIYEARWKAKSARFVYQDVKY-----------IKDNFGAD 239

Query: 236 RGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKA--HGDLDVLMPYLHL 293
             +  D             S +     + +      D  D    A      +     +  
Sbjct: 240 AIEFHDNNFFVSEKRAVEFSNLVKNENMTWWGMARIDTMDKFKDASLAAIREAGCKVIFF 299

Query: 294 PVQSGSDRILKSMNRRHT--AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351
             +SG+D++L  M++  T    +  +  +R++    DI     F++G P  +    +  +
Sbjct: 300 GAESGNDKVLAQMDKGGTQSGEQIIRFAERMKKF--DIIPEYSFVLGTPAPSPQQVQQQI 357

Query: 352 DL-------VDKIGY-AQAFSFKYSPRLGTPGSNMLEQV 382
           D        V ++    +   + YSP   T GS M E V
Sbjct: 358 DFDINFIKQVKRVNPQTEIVIYTYSPVP-TEGSAMYEDV 395


>gi|220909891|ref|YP_002485202.1| Radical SAM domain-containing protein [Cyanothece sp. PCC 7425]
 gi|219866502|gb|ACL46841.1| Radical SAM domain protein [Cyanothece sp. PCC 7425]
          Length = 533

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 58/347 (16%), Positives = 108/347 (31%), Gaps = 32/347 (9%)

Query: 52  GYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQ 111
           G E     D  DL++L+   +++         + +   L            V V G    
Sbjct: 56  GLETEADWDWCDLVILSAMLVQKA---DFLVLIDQAVQLGKK---------VAVGGPYPT 103

Query: 112 AEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYN 171
           +  E+ L      N ++  +    +P  L     G+       + +       +      
Sbjct: 104 SIPEDALAA--GANYLILDEGEITVPHFLAAIAQGEEQGIFRAAEKPDVSCSPMPRFDLL 161

Query: 172 RKRGVTAF-LTIQEGCDKFCTFCVVPYTRGIEISRSLS--QVVDEARKLIDNGVCEITLL 228
           ++       +    GC   C FC +    G   SR+    Q + E ++L D G      +
Sbjct: 162 QQDAYLMMAVQFSRGCPFNCEFCDIINLYGR-KSRTKEPSQTLAELQRLYDLGWRGAIFM 220

Query: 229 GQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLM 288
             +      + +   K    +L+  ++            S      D L++  G      
Sbjct: 221 VDDNFIGNQRNV---KRLLRELIPWMAARDYPFSFITEASVNLAEDDELLELMGRAGFYA 277

Query: 289 PYLHLPVQSGSDRILKSMNR-RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDF 347
             + L +++  +  LK   + ++T        D+I      + I++ FI+GF GE     
Sbjct: 278 --VFLGIETPDEDSLKVTRKLQNTRSPLAAACDKIHKA--GLLITAGFIIGFDGECTGAG 333

Query: 348 RATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCL 394
                 V     AQ           T     LE      +  RLL L
Sbjct: 334 ERIQAFVAMTRIAQPMLGILQAPPNTALWQRLE------REGRLLHL 374


>gi|104783760|ref|YP_610258.1| lipoyl synthase [Pseudomonas entomophila L48]
 gi|123079077|sp|Q1I4G1|LIPA_PSEE4 RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|95112747|emb|CAK17475.1| lipoate synthase [Pseudomonas entomophila L48]
          Length = 338

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 35/214 (16%), Positives = 74/214 (34%), Gaps = 10/214 (4%)

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           + +    E  S  + G     G   F+ + + C + C FC V + R   +   L +  + 
Sbjct: 78  HKLHSVCEEASCPNLGECFSGGTATFMIMGDICTRRCPFCDVGHGRPKPL--DLDEPKNL 135

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
           A  + D  +  + +   +    R    DG    F+D +  +  +   V+L       R  
Sbjct: 136 AIAIADLRLKYVVITSVD----RDDLRDGGAQHFADCIREIRALSPGVQLETLVPDYRGR 191

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
            D  ++         P +         R+ K+            ++ + + + P +   S
Sbjct: 192 MDVALEITAQTP---PDVFNHNLETVPRLYKAARPGSDYDWSLDLLQKFKQMVPHVPTKS 248

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
             ++G  GETD++    M  + +         +Y
Sbjct: 249 GLMLGL-GETDEEVIEVMHRMREHDIDMLTLGQY 281


>gi|68248577|ref|YP_247689.1| lipoyl synthase [Haemophilus influenzae 86-028NP]
 gi|319896448|ref|YP_004134641.1| lipoic acid synthetase [Haemophilus influenzae F3031]
 gi|81336996|sp|Q4QPL8|LIPA_HAEI8 RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|68056776|gb|AAX87029.1| Lipoic acid synthetase [Haemophilus influenzae 86-028NP]
 gi|317431950|emb|CBY80298.1| Lipoic acid synthetase [Haemophilus influenzae F3031]
          Length = 320

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/214 (15%), Positives = 71/214 (33%), Gaps = 10/214 (4%)

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           + +    E  S  +       G   F+ +   C + C FC V    G  +     +    
Sbjct: 61  HGLHSVCEEASCPNLHECFNHGTATFMILGAICTRRCPFCDV--AHGKPLPPDPEEPQKL 118

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
           A  + D  +  + +   +    R    D     FS+ + ++ E+   +++       R  
Sbjct: 119 AETIQDMKLKYVVITSVD----RDDLPDRGAGHFSECVKAVRELNPNIKIEILVPDFRGR 174

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
               ++   D     P +         R+ K +          +++   + + P+I   S
Sbjct: 175 ITQALEKLKDNP---PDVFNHNLENVPRLYKEIRPGADYEWSLKLLREFKEIFPNIPTKS 231

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
             +VG  GET+++    M  +   G       +Y
Sbjct: 232 GLMVGL-GETNEEILQVMQDLRDNGVTMLTLGQY 264


>gi|326315250|ref|YP_004232922.1| lipoic acid synthetase [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323372086|gb|ADX44355.1| lipoic acid synthetase [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 326

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/221 (14%), Positives = 78/221 (35%), Gaps = 12/221 (5%)

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
           + +  ++ +    E  S  + G    +G   F+ + + C + C FC V + R   +    
Sbjct: 62  KEILREHKLHTVCEEASCPNIGECFGKGTATFMIMGDKCTRRCPFCDVGHGRPDPL--DK 119

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
            + ++ AR +    +  + +   +    R    DG    F + + ++  +    ++    
Sbjct: 120 DEPLNLARTIAALKLKYVVITSVD----RDDLRDGGSGHFVECIQNIRALSPQTQIEILV 175

Query: 268 SHPRDMSDCLIKAH-GDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
              R   D  ++        +M +        + R+ K             ++ + +++ 
Sbjct: 176 PDFRGRDDRALEILKAAPPDVMNHNL----ETAPRLYKEARPGSDYQFSLNLLKKFKALH 231

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           P +   S  +VG  GETD++    M  +           +Y
Sbjct: 232 PGVPTKSGIMVGL-GETDEEILQVMRDMRAHDIDMLTIGQY 271


>gi|160878303|ref|YP_001557271.1| cobalamin B12-binding domain-containing protein [Clostridium
           phytofermentans ISDg]
 gi|160426969|gb|ABX40532.1| cobalamin B12-binding domain protein [Clostridium phytofermentans
           ISDg]
          Length = 583

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 53/306 (17%), Positives = 99/306 (32%), Gaps = 37/306 (12%)

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL---- 139
           +  +  +     K    + + V G     + EE L+R P ++ V+  +      EL    
Sbjct: 68  ISMVEEVIREYRKLDASVKIWVGGPEVSYDPEECLKRLPEIDGVMIGEGEATFTELASYY 127

Query: 140 -------LERARFG----------KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLT- 181
                  +E AR            K   +   + + K    S +   Y     ++ F   
Sbjct: 128 SSTQSNIIEDARKTLSDISGIAYRKEDGEIIKTRDRKPMDFSRLPFLYKEAMELSEFANR 187

Query: 182 -----IQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR 236
                   GC   C++C+          R L  V  E    +D  V ++  + +  N   
Sbjct: 188 IIYYETSRGCPFSCSYCL-SSIDKRVRFRDLDLVYQELGLFLDKKVAQVKFIDRTFNC-- 244

Query: 237 GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQ 296
                 +K     +   + E    V   +       + +  +     L   +  L + VQ
Sbjct: 245 ------KKSHAMGIWQFIKEHDNGVTNFHFEIAADILDEEQLSLLETLRPGLIQLEIGVQ 298

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
           S +D  + ++NRR       + + RI+    +I    D I G P E    F  + + V  
Sbjct: 299 STNDTTIDAINRRMDLKMVSENVARIKKA-DNIHQHLDLIAGLPFEDYTSFGNSFNDVYA 357

Query: 357 IGYAQA 362
           +   Q 
Sbjct: 358 MKPDQL 363


>gi|312963233|ref|ZP_07777717.1| Lipoyl synthase [Pseudomonas fluorescens WH6]
 gi|311282499|gb|EFQ61096.1| Lipoyl synthase [Pseudomonas fluorescens WH6]
          Length = 341

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 36/215 (16%), Positives = 75/215 (34%), Gaps = 12/215 (5%)

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           + +    E  S  + G     G   F+ + + C + C FC V + R   +   +++    
Sbjct: 79  HKLHSVCEEASCPNLGECFSGGTATFMIMGDICTRRCPFCDVGHGRPKPL--DVNEPQSL 136

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD- 272
           A  + D  +  + +   +    R    DG    F+D +  + ++   V L       R  
Sbjct: 137 AIAIADLKLKYVVITSVD----RDDLRDGGAQHFADCIREIRKLSPNVMLETLVPDYRGR 192

Query: 273 MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAIS 332
           M   L     +   +  +    V     R+ K+            ++ + + + P I   
Sbjct: 193 MDVALEITAAEPPDVFNHNLETV----PRLYKAARPGSDYQWSLTLLQKFKQMMPHIPTK 248

Query: 333 SDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           S  ++G  GETD++    M  + +         +Y
Sbjct: 249 SGLMLGL-GETDEEVIEVMKRMREHDIDMLTLGQY 282


>gi|306836636|ref|ZP_07469602.1| coproporphyrinogen dehydrogenase [Corynebacterium accolens ATCC
           49726]
 gi|304567466|gb|EFM43065.1| coproporphyrinogen dehydrogenase [Corynebacterium accolens ATCC
           49726]
          Length = 379

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 50/233 (21%), Positives = 78/233 (33%), Gaps = 15/233 (6%)

Query: 186 CDKFCTFCVV-PYTRGIEISRSLSQV----VDEARKLIDNGVCEITLLGQNVNAWRGKGL 240
           C   C +C    YT G   S     +    +D   K ++     +      V    G   
Sbjct: 14  CATRCGYCDFNTYTPGELGS--PRDLTGPYLDALDKELEMAAGRVGRTADTVFIGGGTPS 71

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300
                  S +L ++    GL      T+     S          D     + L +QS S 
Sbjct: 72  LLGGQGLSRILDTVRSTFGLSPDAEVTTESNPESTSPEYFAALADAGFNRISLGMQSASH 131

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDI-AISSDFIVGFPGETDDDFRATMDLVDKIGY 359
            +L+ + R HT           R        ++ D I G P ETDD+ R T+D V + G 
Sbjct: 132 SVLQVLERAHTPGRAFDAAREAREA--GFQHVNLDMIYGTPTETDDNVRETLDRVLETGV 189

Query: 360 AQAFSFKYSPRLGTPGSN-----MLEQVDENVKAERLLCLQKKLREQQVSFND 407
               ++      GT  +      +L   DE+V A R   +   L E    + +
Sbjct: 190 DHVSAYSLIVEDGTRMARKVNKGLLPAPDEDVLARRYEMISSTLEEAGFEWYE 242


>gi|332708620|ref|ZP_08428594.1| Fe-S oxidoreductase [Lyngbya majuscula 3L]
 gi|332352717|gb|EGJ32283.1| Fe-S oxidoreductase [Lyngbya majuscula 3L]
          Length = 513

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 53/328 (16%), Positives = 110/328 (33%), Gaps = 25/328 (7%)

Query: 58  SMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEI 117
             D A++++++   +++K       FL +I+  K    K      V V G        E 
Sbjct: 46  EWDWAEIVIISGMIVQKK------DFLEQIQEAKRRGKK------VAVGGPYPTTSPHE- 92

Query: 118 LRRSPIVNVVVGPQTYYRLPELLERARFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRG 175
                  + ++  +    LP  +     G+   V   +    D  E         + +  
Sbjct: 93  -PEGAGADYLILDEGEITLPMFVSAIERGESQGVFRANGEKPDVTESPIPRFDLLDLEAY 151

Query: 176 VTAFLTIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVCEITLLGQNVNA 234
            T  +    GC   C FC +    G +  +++  Q++ E  +L++        L  +   
Sbjct: 152 DTMAIQFSRGCPFQCEFCDIIVLYGRKPRTKTPEQLLAELERLLELNFQGGIFLVDDNFI 211

Query: 235 WRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP 294
              + +   K     +   ++E +         S        LI    D +     + L 
Sbjct: 212 GNKRNV---KILLKAMKVWMAEHEYPFNFITEASVDLAQDQELIDLMVDCN--FKAVFLG 266

Query: 295 VQSGSDRILKSMNR-RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
           +++  +  L    + ++T     + +D I      I + + FI+GF GE        +  
Sbjct: 267 IETPDEDSLTLTKKLQNTRDSLSESVDAITQA--GIRVMAGFIMGFDGEKPGAGDRIVQF 324

Query: 354 VDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           ++K     AF         T   + LE+
Sbjct: 325 IEKTSIPIAFFSMLQALPNTALWHRLEK 352


>gi|322507337|gb|ADX02791.1| lipA [Acinetobacter baumannii 1656-2]
 gi|323518764|gb|ADX93145.1| lipoyl synthase [Acinetobacter baumannii TCDC-AB0715]
          Length = 342

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 64/208 (30%), Gaps = 12/208 (5%)

Query: 161 ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN 220
           E  +  +       G   F+ + + C + C FC V    G   +    +    A  + + 
Sbjct: 71  EEAACPNLPECFGGGTATFMIMGDICTRRCPFCDV--AHGRPNALDPDEPRHMAETIANL 128

Query: 221 GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKA 280
            +    +   +    R   LDG    F D +     +     L       R   D  ++ 
Sbjct: 129 KLKYAVITSVD----RDDLLDGGAQHFVDCIKEARALSPNTLLEILVPDFRGRMDIALRI 184

Query: 281 HGDLDVLMPYLHLPVQSGSDRIL-KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGF 339
             +     P         +   L K+M           ++   +   PDI      +VG 
Sbjct: 185 MTE----CPPDVFNHNIETVPRLYKAMRPGSDYQHSLNLLKMFKEYCPDIPTKCGLMVGI 240

Query: 340 PGETDDDFRATMDLVDKIGYAQAFSFKY 367
            GET+++  A +D +           +Y
Sbjct: 241 -GETEEEVIALLDDLRAHDVDYVTIGQY 267


>gi|311695844|gb|ADP98717.1| oxygen-independent coproporphyrinogen III oxidase [marine bacterium
           HP15]
          Length = 472

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 38/239 (15%), Positives = 83/239 (34%), Gaps = 24/239 (10%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQN-----VNAWRGKGL 240
           C   C +C         I++   + +    +++     +  L G +     ++   G   
Sbjct: 75  CAHLCYYC----ACNKVITKKRDKAMPYVERVLKEAAIQSKLFGVDRPVTQLHWGGGTPT 130

Query: 241 DGEKCTFSDLLYSLSEI----KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQ 296
              K     L+    E+     G  R       PR++    +    +L      + L VQ
Sbjct: 131 FLPKDVMEHLMAGYGELFNLQTGEERDYSVEIDPREVDQDTLPTLWNLG--FNRISLGVQ 188

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI-AISSDFIVGFPGETDDDFRATMDLVD 355
             +  + K++NR         +++  R +     +I+ D I G P +T + F  T++ V 
Sbjct: 189 DVNPEVQKAVNRTQPRAMTEAVLNEARRI--GFRSINLDLIYGLPYQTPESFAETLEAVI 246

Query: 356 KIGYAQAFSFKY--SPRLGTPGSNMLEQ-VDENVKAERLLCLQKKLREQQVSFNDACVG 411
           ++   +   F Y   P    P + +    +      ++L  L   +     +  +  +G
Sbjct: 247 EMSPDRLSVFSYAHLPERFYPQTRIQGDTLPSP--QQKLAILHNTINRLLEAGYE-YIG 302


>gi|302519006|ref|ZP_07271348.1| coproporphyrinogen III oxidase [Streptomyces sp. SPB78]
 gi|302427901|gb|EFK99716.1| coproporphyrinogen III oxidase [Streptomyces sp. SPB78]
          Length = 413

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 47/241 (19%), Positives = 86/241 (35%), Gaps = 25/241 (10%)

Query: 186 CDKFCTFCVV-PYTRGIEI-------SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG 237
           C   C +C    YT            SR      + A  L         +LG++    R 
Sbjct: 42  CASRCGYCDFNTYTASELRGTGGVLASRD-----NYADTLAQEIRLARRVLGEDPRPART 96

Query: 238 KGLDGEKCTF---SDLLYSLSEIK---GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL 291
               G   T    +DL+  L+ ++   GL      T+     S          +     +
Sbjct: 97  VFFGGGTPTLLPAADLVRMLAAVRDEFGLAPDAEVTTEANPESVDPAYLETLREGGFNRI 156

Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351
              +QS    +L+ ++R HT       +   R+      ++ D I G PGE+D D+RA++
Sbjct: 157 SFGMQSAKPHVLRVLDRNHTPGRPEACVAEARAA-GFAHVNLDLIYGTPGESDADWRASL 215

Query: 352 DLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ-----VDENVKAERLLCLQKKLREQQVSFN 406
           +     G     ++      GT  +  + +      D++  A+R L   + L +   S+ 
Sbjct: 216 EAAIGAGPDHVSAYALIVEEGTGLARRIRRGEIPMTDDDEHADRYLIADELLAKAGFSWY 275

Query: 407 D 407
           +
Sbjct: 276 E 276


>gi|162286727|ref|YP_001085353.2| lipoyl synthase [Acinetobacter baumannii ATCC 17978]
 gi|169632950|ref|YP_001706686.1| lipoyl synthase [Acinetobacter baumannii SDF]
 gi|169795283|ref|YP_001713076.1| lipoyl synthase [Acinetobacter baumannii AYE]
 gi|184158852|ref|YP_001847191.1| lipoyl synthase [Acinetobacter baumannii ACICU]
 gi|213158051|ref|YP_002320102.1| lipoic acid synthetase [Acinetobacter baumannii AB0057]
 gi|215482816|ref|YP_002325019.1| lipoic acid synthetase [Acinetobacter baumannii AB307-0294]
 gi|301346006|ref|ZP_07226747.1| lipoyl synthase [Acinetobacter baumannii AB056]
 gi|301510417|ref|ZP_07235654.1| lipoyl synthase [Acinetobacter baumannii AB058]
 gi|301595614|ref|ZP_07240622.1| lipoyl synthase [Acinetobacter baumannii AB059]
 gi|332850390|ref|ZP_08432710.1| lipoyl synthase [Acinetobacter baumannii 6013150]
 gi|332871829|ref|ZP_08440252.1| lipoyl synthase [Acinetobacter baumannii 6013113]
 gi|332875279|ref|ZP_08443111.1| lipoyl synthase [Acinetobacter baumannii 6014059]
 gi|169148210|emb|CAM86073.1| lipoate synthase [Acinetobacter baumannii AYE]
 gi|169151742|emb|CAP00544.1| lipoate synthase [Acinetobacter baumannii]
 gi|183210446|gb|ACC57844.1| Lipoate synthase [Acinetobacter baumannii ACICU]
 gi|193077872|gb|ABO12751.2| lipoate synthase [Acinetobacter baumannii ATCC 17978]
 gi|213057211|gb|ACJ42113.1| lipoic acid synthetase [Acinetobacter baumannii AB0057]
 gi|213987271|gb|ACJ57570.1| lipoic acid synthetase [Acinetobacter baumannii AB307-0294]
 gi|332730661|gb|EGJ61972.1| lipoyl synthase [Acinetobacter baumannii 6013150]
 gi|332731158|gb|EGJ62458.1| lipoyl synthase [Acinetobacter baumannii 6013113]
 gi|332736536|gb|EGJ67531.1| lipoyl synthase [Acinetobacter baumannii 6014059]
          Length = 337

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 64/208 (30%), Gaps = 12/208 (5%)

Query: 161 ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN 220
           E  +  +       G   F+ + + C + C FC V    G   +    +    A  + + 
Sbjct: 66  EEAACPNLPECFGGGTATFMIMGDICTRRCPFCDV--AHGRPNALDPDEPRHMAETIANL 123

Query: 221 GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKA 280
            +    +   +    R   LDG    F D +     +     L       R   D  ++ 
Sbjct: 124 KLKYAVITSVD----RDDLLDGGAQHFVDCIKEARALSPNTLLEILVPDFRGRMDIALRI 179

Query: 281 HGDLDVLMPYLHLPVQSGSDRIL-KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGF 339
             +     P         +   L K+M           ++   +   PDI      +VG 
Sbjct: 180 MTE----CPPDVFNHNIETVPRLYKAMRPGSDYQHSLNLLKMFKEYCPDIPTKCGLMVGI 235

Query: 340 PGETDDDFRATMDLVDKIGYAQAFSFKY 367
            GET+++  A +D +           +Y
Sbjct: 236 -GETEEEVIALLDDLRAHDVDYVTIGQY 262


>gi|58583575|ref|YP_202591.1| lipoyl synthase [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84625387|ref|YP_452759.1| lipoyl synthase [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|75434040|sp|Q5GVR7|LIPA_XANOR RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|123752700|sp|Q2NYZ2|LIPA_XANOM RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|58428169|gb|AAW77206.1| lipoic acid synthetase [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84369327|dbj|BAE70485.1| lipoic acid synthetase [Xanthomonas oryzae pv. oryzae MAFF 311018]
          Length = 337

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 46/236 (19%), Positives = 77/236 (32%), Gaps = 24/236 (10%)

Query: 161 ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS--QVVDEARKLI 218
           E  S  +       G   F+ + E C + C+FC V + R           +    A  + 
Sbjct: 82  EEASCPNIHECFSHGTATFMILGEVCTRRCSFCDVAHGRPK----PPDANEPASLAITVA 137

Query: 219 DNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD---MSD 275
           D G+  + +   +    R    DG    F D + ++       R+   T   R    M  
Sbjct: 138 DMGLKYVVVTSVD----RDDLRDGGAQHFVDCISAIRTSSPNTRIEILTPDFRGKGRMDR 193

Query: 276 CL-IKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSD 334
            L I A    DV    +        +     +           ++ R ++  P IA  S 
Sbjct: 194 ALDILALSPPDVFNHNIETVPDLYPN-----VRPGADYQWSLTLLQRFKAQHPSIATKSG 248

Query: 335 FIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN--MLEQVDENVKA 388
            ++G  GET +  +AT+  +           +Y     TP  +  M     E  KA
Sbjct: 249 IMLGL-GETMEQVQATLRDLRAHDVDMITIGQY--LQPTPHHHPVMRYWTPEEYKA 301


>gi|117927989|ref|YP_872540.1| coproporphyrinogen III oxidase, anaerobic [Acidothermus
           cellulolyticus 11B]
 gi|117648452|gb|ABK52554.1| coproporphyrinogen III oxidase, anaerobic [Acidothermus
           cellulolyticus 11B]
          Length = 400

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 43/237 (18%), Positives = 75/237 (31%), Gaps = 22/237 (9%)

Query: 186 CDKFCTFC----VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD 241
           C   C +C          G   SR     +      I         L  +          
Sbjct: 35  CAARCGYCDFNTYTAAELGGHASR-----LTFVHDAIAELRMARRFLSGDAVVQTVFFGG 89

Query: 242 GEKCTF--SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKA--HGDLDVL-MPYLHLPVQ 296
           G       + L+  L  I G   L        + +   + A     L       +   +Q
Sbjct: 90  GTPTLLPAAHLIEILRVIDGEFGLAAGAEVTVEANPESVDAEMLARLAAGGFTRISFGMQ 149

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI-AISSDFIVGFPGETDDDFRATMDLVD 355
           S   RIL  ++RRHT       + +  +       ++ D I G P E+D D+R +++   
Sbjct: 150 SAVPRILALLDRRHTPGTPELRVAQAFAA--GFQHVNLDLIYGTPTESDADWRRSLEAAV 207

Query: 356 KIGYAQAFSFKYSPRLGTPGSNM-----LEQVDENVKAERLLCLQKKLREQQVSFND 407
             G     ++  +   GT  +       L   D++V A+R     + L     S+ +
Sbjct: 208 AAGPDHISAYALTVEPGTALARRIARGDLPAPDDDVAADRYRYADEFLSAMGYSWYE 264


>gi|30265011|ref|NP_847388.1| lipoyl synthase [Bacillus anthracis str. Ames]
 gi|47530512|ref|YP_021861.1| lipoyl synthase [Bacillus anthracis str. 'Ames Ancestor']
 gi|47567009|ref|ZP_00237726.1| lipoic acid synthetase [Bacillus cereus G9241]
 gi|49187830|ref|YP_031083.1| lipoyl synthase [Bacillus anthracis str. Sterne]
 gi|49481035|ref|YP_038992.1| lipoyl synthase [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|65316963|ref|ZP_00389922.1| COG0320: Lipoate synthase [Bacillus anthracis str. A2012]
 gi|165870920|ref|ZP_02215572.1| lipoic acid synthetase [Bacillus anthracis str. A0488]
 gi|167634914|ref|ZP_02393232.1| lipoic acid synthetase [Bacillus anthracis str. A0442]
 gi|167639957|ref|ZP_02398225.1| lipoic acid synthetase [Bacillus anthracis str. A0193]
 gi|170685961|ref|ZP_02877184.1| lipoic acid synthetase [Bacillus anthracis str. A0465]
 gi|170706962|ref|ZP_02897419.1| lipoic acid synthetase [Bacillus anthracis str. A0389]
 gi|177652263|ref|ZP_02934766.1| lipoic acid synthetase [Bacillus anthracis str. A0174]
 gi|190567144|ref|ZP_03020059.1| lipoic acid synthetase [Bacillus anthracis Tsiankovskii-I]
 gi|196032705|ref|ZP_03100118.1| lipoic acid synthetase [Bacillus cereus W]
 gi|218906164|ref|YP_002453998.1| lipoic acid synthetase [Bacillus cereus AH820]
 gi|227817742|ref|YP_002817751.1| lipoyl synthase [Bacillus anthracis str. CDC 684]
 gi|228917598|ref|ZP_04081142.1| Lipoyl synthase [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
 gi|228929996|ref|ZP_04093007.1| Lipoyl synthase [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
 gi|228936269|ref|ZP_04099068.1| Lipoyl synthase [Bacillus thuringiensis serovar andalousiensis BGSC
           4AW1]
 gi|228948695|ref|ZP_04110973.1| Lipoyl synthase [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
 gi|228988214|ref|ZP_04148311.1| Lipoyl synthase [Bacillus thuringiensis serovar tochigiensis BGSC
           4Y1]
 gi|229020211|ref|ZP_04176984.1| Lipoyl synthase [Bacillus cereus AH1273]
 gi|229026438|ref|ZP_04182795.1| Lipoyl synthase [Bacillus cereus AH1272]
 gi|229032613|ref|ZP_04188577.1| Lipoyl synthase [Bacillus cereus AH1271]
 gi|229124508|ref|ZP_04253693.1| Lipoyl synthase [Bacillus cereus 95/8201]
 gi|229158568|ref|ZP_04286627.1| Lipoyl synthase [Bacillus cereus ATCC 4342]
 gi|229163952|ref|ZP_04291892.1| Lipoyl synthase [Bacillus cereus R309803]
 gi|229603373|ref|YP_002869212.1| lipoyl synthase [Bacillus anthracis str. A0248]
 gi|254687304|ref|ZP_05151161.1| lipoyl synthase [Bacillus anthracis str. CNEVA-9066]
 gi|254725316|ref|ZP_05187099.1| lipoyl synthase [Bacillus anthracis str. A1055]
 gi|254735359|ref|ZP_05193067.1| lipoyl synthase [Bacillus anthracis str. Western North America
           USA6153]
 gi|254740626|ref|ZP_05198317.1| lipoyl synthase [Bacillus anthracis str. Kruger B]
 gi|254753112|ref|ZP_05205148.1| lipoyl synthase [Bacillus anthracis str. Vollum]
 gi|254761454|ref|ZP_05213475.1| lipoyl synthase [Bacillus anthracis str. Australia 94]
 gi|46576984|sp|Q81XM8|LIPA_BACAN RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|81613511|sp|Q6HBT4|LIPA_BACHK RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|226737631|sp|B7JDM3|LIPA_BACC0 RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|254809150|sp|C3PDK2|LIPA_BACAA RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|254809151|sp|C3LCA6|LIPA_BACAC RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|30259688|gb|AAP28874.1| lipoyl synthase [Bacillus anthracis str. Ames]
 gi|47505660|gb|AAT34336.1| lipoic acid synthetase [Bacillus anthracis str. 'Ames Ancestor']
 gi|47556327|gb|EAL14661.1| lipoic acid synthetase [Bacillus cereus G9241]
 gi|49181757|gb|AAT57133.1| lipoic acid synthetase [Bacillus anthracis str. Sterne]
 gi|49332591|gb|AAT63237.1| lipoic acid synthetase [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|164713429|gb|EDR18954.1| lipoic acid synthetase [Bacillus anthracis str. A0488]
 gi|167512038|gb|EDR87416.1| lipoic acid synthetase [Bacillus anthracis str. A0193]
 gi|167529664|gb|EDR92413.1| lipoic acid synthetase [Bacillus anthracis str. A0442]
 gi|170128065|gb|EDS96935.1| lipoic acid synthetase [Bacillus anthracis str. A0389]
 gi|170670425|gb|EDT21165.1| lipoic acid synthetase [Bacillus anthracis str. A0465]
 gi|172082269|gb|EDT67335.1| lipoic acid synthetase [Bacillus anthracis str. A0174]
 gi|190561648|gb|EDV15618.1| lipoic acid synthetase [Bacillus anthracis Tsiankovskii-I]
 gi|195994134|gb|EDX58089.1| lipoic acid synthetase [Bacillus cereus W]
 gi|218534925|gb|ACK87323.1| lipoic acid synthetase [Bacillus cereus AH820]
 gi|227004752|gb|ACP14495.1| lipoyl synthase [Bacillus anthracis str. CDC 684]
 gi|228619573|gb|EEK76459.1| Lipoyl synthase [Bacillus cereus R309803]
 gi|228624882|gb|EEK81650.1| Lipoyl synthase [Bacillus cereus ATCC 4342]
 gi|228658848|gb|EEL14503.1| Lipoyl synthase [Bacillus cereus 95/8201]
 gi|228728698|gb|EEL79710.1| Lipoyl synthase [Bacillus cereus AH1271]
 gi|228734901|gb|EEL85539.1| Lipoyl synthase [Bacillus cereus AH1272]
 gi|228741107|gb|EEL91332.1| Lipoyl synthase [Bacillus cereus AH1273]
 gi|228771511|gb|EEM19980.1| Lipoyl synthase [Bacillus thuringiensis serovar tochigiensis BGSC
           4Y1]
 gi|228811002|gb|EEM57345.1| Lipoyl synthase [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
 gi|228823385|gb|EEM69218.1| Lipoyl synthase [Bacillus thuringiensis serovar andalousiensis BGSC
           4AW1]
 gi|228829676|gb|EEM75302.1| Lipoyl synthase [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
 gi|228842078|gb|EEM87181.1| Lipoyl synthase [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
 gi|229267781|gb|ACQ49418.1| lipoyl synthase [Bacillus anthracis str. A0248]
          Length = 298

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/214 (17%), Positives = 79/214 (36%), Gaps = 13/214 (6%)

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           ++V ++ +  +I +    RK     F+ +   C + C FC V      E+   L +    
Sbjct: 37  HTVCEEAKCPNIHECWAVRK--TATFMILGAVCTRACRFCAVKTGLPTEL--DLQEPERV 92

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
           A  ++  G+  + +        R    DG    F++ + ++        +    S    +
Sbjct: 93  ADSVVQMGLKHVVITAV----ARDDLKDGGAAVFAETVRAVRRKNPFTSIEVLPSDMGGV 148

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
            + L         ++ +    V+  S+R+      ++      + + R + ++PDI   S
Sbjct: 149 EENLKMLMDAKPDILNHNIETVRRLSNRV--RARAKYDRS--LEFLRRAKEMQPDIPTKS 204

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
             +VG  GET +D    MD +           +Y
Sbjct: 205 SIMVGL-GETREDLIEAMDDLRANNVDILTLGQY 237


>gi|254519217|ref|ZP_05131273.1| radical SAM domain-containing protein [Clostridium sp. 7_2_43FAA]
 gi|226912966|gb|EEH98167.1| radical SAM domain-containing protein [Clostridium sp. 7_2_43FAA]
          Length = 344

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 47/216 (21%), Positives = 82/216 (37%), Gaps = 16/216 (7%)

Query: 173 KRGVTAFLTIQ-EGCDKFCTFC----VVPYTRGIEISRSLSQVVDEARKLID--NGVCEI 225
           KR     + I  +GC   C FC    +    +     R + + VDE  K ID  N   EI
Sbjct: 3   KRHYIIPIFISHQGCPHQCVFCNQDRIAKVVQEEVTERDVRETVDEYLKTIDHKNSTVEI 62

Query: 226 TLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLD 285
           +  G    A     ++  K      +    + KG +     ++ P  ++  ++    D  
Sbjct: 63  SFFGGTFTA-----INVNKQKELLAVAKEYKEKGYIDKIRMSTRPDAINKYILDYLKDYK 117

Query: 286 VLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDD 345
             +  + L VQS  D +L+   R H+A E  +    I+     I +    + G PG+T +
Sbjct: 118 --VDIIELGVQSLDDEVLRLSGRGHSAEEVEKASKLIKEY--GITLGHQIMPGLPGDTFE 173

Query: 346 DFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
               T+    K+       +       TP ++M E+
Sbjct: 174 KDIETVKKSIKMKPDICRIYPSLVIKDTPMADMYER 209


>gi|145629117|ref|ZP_01784916.1| lipoyl synthase [Haemophilus influenzae 22.1-21]
 gi|144978620|gb|EDJ88343.1| lipoyl synthase [Haemophilus influenzae 22.1-21]
          Length = 320

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/214 (14%), Positives = 71/214 (33%), Gaps = 10/214 (4%)

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           + +    E  S  +       G   F+ +   C + C FC V    G  +     +    
Sbjct: 61  HGLHSVCEEASCPNLHECFNHGTATFMILGAICTRRCPFCDV--AHGKPLPPDPEEPQKL 118

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
           A  + D  +  + +   +    R    D     F++ + ++ E+   +++       R  
Sbjct: 119 AETIQDMKLKYVVITSVD----RDDLPDRGAGHFAECVKAVRELNPNIKIEILVPDFRGR 174

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
               ++   D     P +         R+ K +          +++   + + P+I   S
Sbjct: 175 ITQALEKLKDNP---PDVFNHNLENVPRLYKEIRPGADYEWSLKLLREFKEIFPNIPTKS 231

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
             +VG  GET+++    M  +   G       +Y
Sbjct: 232 GLMVGL-GETNEEILQVMQDLRDNGVTMLTLGQY 264


>gi|308048378|ref|YP_003911944.1| hypothetical protein Fbal_0658 [Ferrimonas balearica DSM 9799]
 gi|307630568|gb|ADN74870.1| conserved hypothetical protein [Ferrimonas balearica DSM 9799]
          Length = 311

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 41/234 (17%), Positives = 81/234 (34%), Gaps = 36/234 (15%)

Query: 188 KFCTFCVVPYTRGIEISR-SLSQVVD--EARKLIDNGVCEITLLG--QNVNAWRGKGLDG 242
             CTFC V        S+ S+++ +    AR+  +    +   L   Q   +   +    
Sbjct: 43  GGCTFCNVSSFSAEHGSKASVAEQLQAGRARREGEQRRADKRYLAYFQAYTSTYDEYAVL 102

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV--LMPYLHLPVQSGSD 300
           ++    +   ++S+I G+       + P  + D ++          +  +L L +Q+ +D
Sbjct: 103 KRK--YEEALAVSDIVGI----CVGTRPDCVPDEVLALLAGYQQQGMEVWLELGLQTAND 156

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
             LK +NR H    Y   + R R     + + +  I+G PGET  D   T+  V  +G  
Sbjct: 157 STLKKINRGHDFAAYADTVARAR--LYGLKVCTHLILGLPGETPADAEQTLQQVLAVGTD 214

Query: 361 QAFSFKYSPRLGT---------------------PGSNMLEQVDENVKAERLLC 393
                      G+                       + +++     V   R+  
Sbjct: 215 GLKLHPLHVVEGSIMAKQWRAGRLALWDQDTYMDCAARLIQHTPAEVVYHRVSA 268


>gi|307719475|ref|YP_003875007.1| hypothetical protein STHERM_c17990 [Spirochaeta thermophila DSM
           6192]
 gi|306533200|gb|ADN02734.1| hypothetical protein STHERM_c17990 [Spirochaeta thermophila DSM
           6192]
          Length = 363

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 36/213 (16%), Positives = 70/213 (32%), Gaps = 19/213 (8%)

Query: 176 VTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ--VVDEARKLIDNGVCEITLLGQNVN 233
           +   L     C K C +C +  +        L +  ++   R+    G     L      
Sbjct: 56  LRGLLEFSNYCRKDCLYCGIRRSNRKVRRYRLDEEVILAVVREAFARGFRTFVLQS---- 111

Query: 234 AWRGKGLDGEKCTFSDLLYSL-SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLH 292
              G+         + L+  +  E +G   +  +          L++  G    LM +  
Sbjct: 112 ---GEDPAWPAERLARLVERVKQETRGEAAVTLSCGLMSREDYRLLREAGADRYLMRFET 168

Query: 293 LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352
                 +D +L    R        + +  +R +  D  + S F+VG PGET++     + 
Sbjct: 169 ------ADPVLHRRLRGMDLDRRLEGLHHLRDL--DYEVGSGFMVGLPGETEETMWENLL 220

Query: 353 LVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
           L  ++         + P   TP ++   QV   
Sbjct: 221 LCRRLDLDMVGIGPFIPHPETPLAH-APQVPLE 252


>gi|302346518|ref|YP_003814816.1| radical SAM domain protein [Prevotella melaninogenica ATCC 25845]
 gi|302150497|gb|ADK96758.1| radical SAM domain protein [Prevotella melaninogenica ATCC 25845]
          Length = 473

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 57/294 (19%), Positives = 106/294 (36%), Gaps = 25/294 (8%)

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
              R  K +       + VV+ G    +  +E  + +  + +  G + + R  + L    
Sbjct: 71  NAYRAYKIADEYRRRGVYVVMGGLHVTSIPDEAAQHADTLILGPGEEAFPRFIKDLREGH 130

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
             KR V +  S+E+        D     K  V   L +  GC   C FC          S
Sbjct: 131 PQKRYVASWRSIENIPP--VRRDLIKREKYFVPNSLVVSRGCPHHCDFCYKDAFYSEGKS 188

Query: 205 ---RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
              R +   + E   L       +  L  ++         G     S+L   +    G+ 
Sbjct: 189 FYTRKVDDALAEIDSLPG---RHLYFLDDHLL--------GNPHFASELFEGMR---GMG 234

Query: 262 RLRYTTSHP-RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR-RHTAYEYRQII 319
           R+  + S     ++  LI+   +    +  L L  ++ S   L+S N+ ++ + +Y   +
Sbjct: 235 RVFQSASTVAAVLNGNLIEKAAEAG--LRSLFLGFETFSPDNLRSSNKLQNLSKDYVAAV 292

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
            R+ S+   I I+  F+ G   +  D F+ T+D   +     A     +P  GT
Sbjct: 293 KRLHSL--GIMINGSFVFGLDHDDKDVFQRTVDWGIEHSITTATFHILTPYPGT 344


>gi|306756314|sp|A5DGI1|LIPA_PICGU RecName: Full=Lipoyl synthase, mitochondrial; AltName: Full=Lipoate
           synthase; Short=LS; Short=Lip-syn; AltName: Full=Lipoic
           acid synthase; Flags: Precursor
 gi|190346245|gb|EDK38284.2| conserved hypothetical protein [Meyerozyma guilliermondii ATCC
           6260]
          Length = 385

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/214 (17%), Positives = 81/214 (37%), Gaps = 10/214 (4%)

Query: 156 VEDKFERLSIVDGGYNRKRGVTAFLTIQ-EGCDKFCTFCVVPYTRGIEISRSLSQVVDEA 214
           V ++ +  +I +    +K   TA + +  + C + C FC V  +R       +    + A
Sbjct: 106 VCEEAKCPNIGECWGGKKSEATATIMLMGDTCTRGCRFCSVKTSRKPAPPDPME-PENTA 164

Query: 215 RKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMS 274
             +   G+  + L   +    R   +DG     ++ +  + E    + +       R   
Sbjct: 165 EAISRWGLGYVVLTTVD----RDDLVDGGAHHLAETVRKIKEKAPQILVEVLGGDFRG-D 219

Query: 275 DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSD 334
             +        + + Y H  +++  D      +RR T  +   I+ R +  +P +   + 
Sbjct: 220 LDMASVLARSGLDV-YAH-NIETVEDLTPHVRDRRATYRQSLSILQRAKETKPSLVTKTS 277

Query: 335 FIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
            ++GF GETD+    T+  + +I        +Y 
Sbjct: 278 MMLGF-GETDEQIMQTLRDLREIKCDVVTFGQYM 310


>gi|154151812|ref|YP_001405430.1| radical SAM domain-containing protein [Candidatus Methanoregula
           boonei 6A8]
 gi|154000364|gb|ABS56787.1| Radical SAM domain protein [Methanoregula boonei 6A8]
          Length = 553

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 52/275 (18%), Positives = 91/275 (33%), Gaps = 35/275 (12%)

Query: 180 LTIQEGCDKF----CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW 235
           L    GC       C+FC  P+  G+   RS+S V  E   L  +G     +  Q     
Sbjct: 187 LETARGCSHGATGGCSFCTEPF-YGLPRYRSVSGVAAEVAALASHGARHFRVGRQPDLLA 245

Query: 236 RGKGLDGEKCTFSDLLYSL-----SEIKGLVRLRYTTSHP------RDMSDCLIKAHGDL 284
            G           DLL  L     +    L  L    ++P       + S   + A    
Sbjct: 246 YGADAGEYPAPRPDLLEELFSSIRTSAPDLKTLHIDNTNPATIARHEEKSREALAAIIRY 305

Query: 285 DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI-------RSVRPDIAISSDFIV 337
                     +++    ++ + N +    E  + I+         R   P++    +F+ 
Sbjct: 306 HTPGDVAAFGMETADPAVVAANNLKAQPDEVFRAIEIANEIGGVRRDGIPELLPGLNFVC 365

Query: 338 GFPGETDDDFRATMDLVDKIGYA-----QAFSFKYSPRLGTPGSNMLEQVDENVKAERLL 392
           G  GET   +      + ++  A     +    +  P  GTP       + +N +  R  
Sbjct: 366 GLAGETPATYDKNEQFLSRVLAAGLLVRRVNIRQVMPFEGTPAYT-NNTLGKNER--RFR 422

Query: 393 CLQKKLREQQVSFNDACV---GQIIE-VLIEKHGK 423
             ++ +RE+        V   G I+  V IE  G+
Sbjct: 423 AFKEFVREKIDLLMLRQVYPIGTILRDVRIEVSGE 457


>gi|94265795|ref|ZP_01289529.1| Radical SAM [delta proteobacterium MLMS-1]
 gi|93453687|gb|EAT04071.1| Radical SAM [delta proteobacterium MLMS-1]
          Length = 452

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 46/280 (16%), Positives = 79/280 (28%), Gaps = 21/280 (7%)

Query: 95  IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDY 154
           I+E     VV+ G        ++L        VVG      LP L +     +   D   
Sbjct: 93  IRENSVAPVVLGGPAFSLMPRQLLEFLEADYGVVGEGEVL-LPWLADELAADRPPGDRIL 151

Query: 155 SVEDKFERLSIVDGGYNRKRGVTAF-----LTIQEGCDKFCTFCVVPYTRGI-EISRSLS 208
             E + E            R   A      +  + GC   C +C  P   G     R   
Sbjct: 152 HNERRVEFWPRPVYSEGPLRYYLAHGGMLGVQTKRGCPYHCAYCSYPTIEGHTLRYRDPE 211

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
           +   E  +L+            +V        DG    F  L  +L    G         
Sbjct: 212 ETAAEVARLVAEYRARFIFFTDSV------FNDGAG-HFRLLAEALIR-NGNTTPWCAFF 263

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
            P+ +    ++      +    + +   +  DR L  + +     +         +V   
Sbjct: 264 RPQHLEREDLRLLKRAGLAA--MEIGTDAACDRTLAGLQKGFDFAQVLHTNRL--AVEEG 319

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
           IA +   + G P E        +D +      +   F +S
Sbjct: 320 IACAHFVMFGGPEEDRRTLGEGLDNLS--RLEKCVVFAFS 357


>gi|291007478|ref|ZP_06565451.1| coproporphyrinogen III oxidase [Saccharopolyspora erythraea NRRL
           2338]
          Length = 378

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 49/225 (21%), Positives = 82/225 (36%), Gaps = 20/225 (8%)

Query: 186 CDKFCTFCVVPYTRGIEI--SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
           C   C +C        E+  S      ++  R  +D G   +   G+ V A       G 
Sbjct: 8   CATRCGYCDFNTYTADELGSSAGFGSWLEGLRAELDLGARVLAAGGEPVPAAGTVFAGGG 67

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMS---------DCLIKAHGDLDVLMPYLHLP 294
             +       L E+   VR  +  +   +++             +           + L 
Sbjct: 68  TPSL-LGAERLGEVLDAVRSSFGLADGAEVTTESNPESTSPEFFEGIAAAG--YTRVSLG 124

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           +QS +  +L+ + RRHT     +     R+      ++ D I G PGETDDD RA++D V
Sbjct: 125 MQSAAQHVLRVLERRHTPGRAVEAAREARAAGFG-HVNLDLIYGTPGETDDDLRASLDAV 183

Query: 355 DKIGYAQAFSFKYSPRLGTPGSNM-----LEQVDENVKAERLLCL 394
            + G     ++      GT  +       L   DE+V A+R   L
Sbjct: 184 LEAGVDHVSAYSLIVEDGTAMARKVRRGDLPMPDEDVLADRYELL 228


>gi|85716668|ref|ZP_01047637.1| Fe-S oxidoreductase [Nitrobacter sp. Nb-311A]
 gi|85696508|gb|EAQ34397.1| Fe-S oxidoreductase [Nitrobacter sp. Nb-311A]
          Length = 491

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 55/360 (15%), Positives = 118/360 (32%), Gaps = 48/360 (13%)

Query: 57  NSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEE 116
              + A+ + ++  HI      +  + + R  +           L V + G    A  + 
Sbjct: 32  EDFEWAEAVFVSGMHI----QRQQMNDICRRAHA--------FALPVALGGPSVSACPD- 78

Query: 117 ILRRSPIVNVVVGPQTYYRLPELLER-----ARFGKRVVDTDYSVEDKFERLSIVDGGYN 171
                P  + +   +      +L+ER     +R  ++VV          +         +
Sbjct: 79  ---YYPSFDYLHVGELGDATDQLIERLARDPSRPDRQVVLKTTDRLAMDQFPVPAYELAD 135

Query: 172 RKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVC-EITLLG 229
            KR     +    GC   C FC +P   G     ++  Q+  E  KL++ G+   +  + 
Sbjct: 136 IKRYFLGSIQYSSGCPYQCEFCDIPGLYGRNPRLKTPEQITRELDKLLECGISGSVYFVD 195

Query: 230 QNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR--LRYTTSHPRDMSDCLIKAHGDLDVL 287
            N          G +    +LL  L E +      LR++     +++          D  
Sbjct: 196 DNFI--------GNRKAALELLPHLIEWQKKTGYVLRFSCEATLNIAKRPEILSQMRDAF 247

Query: 288 MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP-DIAISSDFIVGFPGETDDD 346
              +   +++     LK+M++ H       I+D IR++    + + S  I+G   +  + 
Sbjct: 248 FATIFCGIETPDPVALKAMHKDHN--MMVPIMDAIRTLNDYGMEVVSGIILGLDTDKPET 305

Query: 347 FRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFN 406
            +  ++ +D                 TP              +RL    + + ++    N
Sbjct: 306 GQHLLEFIDHSQIPLLTINLLQALPKTPL------------WDRLKRENRLIEDEGRDSN 353


>gi|325068573|ref|ZP_08127246.1| coproporphyrinogen III oxidase [Actinomyces oris K20]
          Length = 415

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 76/221 (34%), Gaps = 20/221 (9%)

Query: 173 KRGVTAFLTIQEGCDKFCTFC----VVPYTRGIEISRSLSQVV-------DEARKLIDNG 221
           +R  + +L +   C   C +C        T G   S      V         AR+ +D  
Sbjct: 17  ERPFSVYLHVPY-CRVRCGYCDFNTYTNLTMGQGAS--AEDFVGTLAGELRAARRAMDEA 73

Query: 222 VCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAH 281
              +  + Q V    G            +L  + E  GL      T+     S       
Sbjct: 74  GLPVRAV-QTVFVGGGTPTMLPAADLVSMLELVRECFGLAADAEVTTEANPDSVDEAGLA 132

Query: 282 GDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPG 341
              +     +   +QS    +LK + R H      ++++  R     +  S D I G PG
Sbjct: 133 ALAEGGFTRVSFGMQSAVPHVLKVLERTHEPARVPRVVEWARRA--GLRTSLDLIYGAPG 190

Query: 342 ETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           E+ +D++ ++D V +IG     ++      GT    M  QV
Sbjct: 191 ESAEDWQRSLDAVTRIGPDHVSAYALVIEEGT---RMWGQV 228


>gi|227824521|ref|ZP_03989353.1| radical SAM family protein [Acidaminococcus sp. D21]
 gi|226905020|gb|EEH90938.1| radical SAM family protein [Acidaminococcus sp. D21]
          Length = 332

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/200 (19%), Positives = 68/200 (34%), Gaps = 12/200 (6%)

Query: 185 GCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK 244
           GC   C FC  P   G      +  V  + R L      +      N  A+ G       
Sbjct: 11  GCPHRCLFCNQPIINGTAYHG-VEDVKSQLRTLAGWVRKDHR----NELAFYGGSFTALP 65

Query: 245 CTFSDLLYSLS---EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
               + L  L       G       ++ P  +S   +    D    +  + L VQS  D 
Sbjct: 66  LAEQEALLELVMPYRKAGYFTDLRLSTRPDAISPASLSLLRDYG--VRTVELGVQSLDDV 123

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
            L  ++R H A+   +   ++++     A+    +V  PGET++  + T+  V  +    
Sbjct: 124 TLTLLDRGHDAHCVYEATAQLQAA--GFAVIHQLMVNLPGETEETLKKTLRGVTAMHPEG 181

Query: 362 AFSFKYSPRLGTPGSNMLEQ 381
              +      GT  ++   +
Sbjct: 182 CRIYPLLVIEGTKLADWYRK 201


>gi|158521512|ref|YP_001529382.1| radical SAM domain-containing protein [Desulfococcus oleovorans
           Hxd3]
 gi|158510338|gb|ABW67305.1| Radical SAM domain protein [Desulfococcus oleovorans Hxd3]
          Length = 341

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 40/204 (19%), Positives = 75/204 (36%), Gaps = 18/204 (8%)

Query: 185 GCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLID-----NGVCEITLLGQNVNAWRGKG 239
           GC   C FC      G + S +   + D   + +       G  +I   G       G  
Sbjct: 18  GCPHRCVFCDQDAITGQKASLTADDLHDHVHRYLQYRGDNRGHAQIAFYG-------GNF 70

Query: 240 LDGEKCTFSDLLYSLSEI--KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQS 297
           L  E+ + + +L++ S    +GLV+    ++ P  ++   +    D    +  + + VQS
Sbjct: 71  LGLERESLTQMLHAASAFVDQGLVQAIRFSTRPDTITQKNLDLLKDYP--VTTVEVGVQS 128

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
             DR+L+   R HTA +    +  ++         +  + G PG+       T   V  +
Sbjct: 129 MDDRVLEKARRGHTAEQSTAALLLLKQA--GYETGAQLMTGLPGDDGRVSIETAKKVAVL 186

Query: 358 GYAQAFSFKYSPRLGTPGSNMLEQ 381
               A  +      G+P +    Q
Sbjct: 187 KPDFARIYPTLVITGSPLARHYRQ 210


>gi|78211860|ref|YP_380639.1| Elongator protein 3/MiaB/NifB [Synechococcus sp. CC9605]
 gi|78196319|gb|ABB34084.1| Elongator protein 3/MiaB/NifB [Synechococcus sp. CC9605]
          Length = 529

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 47/296 (15%), Positives = 93/296 (31%), Gaps = 45/296 (15%)

Query: 92  NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVV-VGPQTYYRLPELLERARFGKRVV 150
               +       V+ G       E++ +  P   VV +G         +   +  G+R  
Sbjct: 138 KRARRHQPAARAVLGGGAVSVFYEQLGKSLPKGTVVSIGEGEPLLEKLIQGHSLEGERC- 196

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQ----------------------EGCDK 188
              + V +K     I +   +R +    +  I                        GC  
Sbjct: 197 ---FVVGEKPRSGLIHEQPESRPKTACNYDYIASIWPQLDWYLEGGDFYVGVQTKRGCPH 253

Query: 189 FCTFCVVPYTRGIEISR-SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTF 247
            C +CV     G ++    + +VV E R+L D GV             R    D +    
Sbjct: 254 NCCYCVYTVVEGKQVRLNPVDEVVKEMRQLYDRGVRGFWFTDAQFIPARRYIEDAK---- 309

Query: 248 SDLLYSLSEIKGLVRLRY-TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306
            +LL ++ + +GL  +R+       ++   L +   +    M Y  + + SGS  +++ M
Sbjct: 310 -ELLRAI-KSEGLTGIRWAAYIRADNLDPELAQLMVETG--MSYFEIGITSGSQELVRKM 365

Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFP----GETDDDFRATMDLVDKIG 358
              +      +    +     D        V +      E  +  R T+    ++ 
Sbjct: 366 RMGYNLRTVLESCRML----ADAGFRDHVSVNYSFNVIDERPETIRQTVAYHRELE 417


>gi|313203104|ref|YP_004041761.1| radical sam domain protein [Paludibacter propionicigenes WB4]
 gi|312442420|gb|ADQ78776.1| Radical SAM domain protein [Paludibacter propionicigenes WB4]
          Length = 608

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 61/389 (15%), Positives = 127/389 (32%), Gaps = 77/389 (19%)

Query: 60  DDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN---------------SRIKEGGDLLVV 104
             ADL++     + EK   ++   +   +  K                +  K     LV 
Sbjct: 170 SKADLLIY---GMGEKPIVELIKQIREGKTFKEMTNIPQTSFLSKEIPAHPKWKNLELVS 226

Query: 105 VAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLS 164
              C+     ++    +     +      Y    LL++      +V+  Y    + E  +
Sbjct: 227 HEVCL-----KDKKLYASNFKHIEKESNKYEANRLLQKTGNRWVIVNPPYEPLKEAELDA 281

Query: 165 IVDGGYNRKRGVT-------AFLTI------QEGCDKFCTFCVVPYTRGIE-ISRSLSQV 210
             D  Y R            A+  I        GC   C+FC +   +G   +SRS   +
Sbjct: 282 SYDLPYTRVPHPKYKGKTIPAYEMIKFSVNMHRGCFGGCSFCTISAHQGKHIVSRSKESI 341

Query: 211 VDEARKLIDNGVCEITLL---GQNVNAWRGKG----------------------LDGEKC 245
           ++E +K+      +  L    G + N ++ KG                      L+ +  
Sbjct: 342 LNEVKKITAMPDFKGYLSDLGGPSANMYKMKGKNLYICRQCQKPSCIFPKPCFNLNTDHT 401

Query: 246 TFSDLLYSLSEIKGLVR----------LRYTTSHPRDMSDCLIKAHGDL--DVLMPYLHL 293
              D+  S+ ++ G+ +          +  T     +++    +   +L  + +   L +
Sbjct: 402 PLLDIYRSVDQLPGIKKSFIGSGVRYDILLTDPKNVEVNKSHEEYIRELITNHVSGRLKI 461

Query: 294 PVQSGSDRILKSMNRRHTAYE--YRQIIDRI-RSVRPDIAISSDFIVGFPGETDDDFRAT 350
             +  SD +L  M +   AY   +++  +RI R    +  +   FI   PG  ++D    
Sbjct: 462 APEHTSDAVLNLMRKPSFAYFGEFKKKFERINREAGLNQQLIPYFISSHPGCHNEDMAEL 521

Query: 351 MDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
             L     +       ++P   T  + + 
Sbjct: 522 AALTKSFDFKLEQVQDFTPTPMTLATEIY 550


>gi|325969338|ref|YP_004245530.1| radical SAM protein [Vulcanisaeta moutnovskia 768-28]
 gi|323708541|gb|ADY02028.1| Radical SAM domain protein [Vulcanisaeta moutnovskia 768-28]
          Length = 567

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 61/383 (15%), Positives = 130/383 (33%), Gaps = 43/383 (11%)

Query: 125 NVVVGPQTYYRLPELLERARFGKRV----VDTDYSVEDKFERL--SIVDGGYNRKRGVTA 178
           ++VV       + ELL       +V    +  DY + ++F  L   I+    N  + +  
Sbjct: 130 DLVVTGDVDLVIYELLRNNYQLSKVSPALMHIDYELINQFAVLGSRIITQHPNYGKNLII 189

Query: 179 FLTIQEGCDKF----CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA 234
            L   + C ++    C+FC      G    R +  ++ E   L   GV    L  Q    
Sbjct: 190 ELETYKSCPRYISGGCSFCAT-VRYGPVRYREVKAIIAEVEALYGLGVRHFRLGRQADFY 248

Query: 235 WRGKGLDGE----KCTFSDLLYSLSEI----KGLVRLRYTTSHPRDMSDCLIKAHGDLDV 286
                  G+    +     +   L  I      L  L     +P  +     ++     V
Sbjct: 249 TYMAHDTGKLEFPRPNPGAIEELLVGIRNVAPELETLHIDNVNPGTVYHWPRESIEVTKV 308

Query: 287 LMPY------LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV--------RPDIAIS 332
           LM Y        + +++   R++K  N +    E    +  I  +         P++   
Sbjct: 309 LMKYHTPGDVAAMGIETADPRVVKLNNLKVMPDEAYFAVRTISELGRVRGWNGMPELLPG 368

Query: 333 SDFIVGFPGETDDDFRATMDLVDKIGYA-----QAFSFKYSPRLGTPGSNMLEQVDENVK 387
            +F++G PGET + FR  ++ + ++        +    +      TP  N  +++ + ++
Sbjct: 369 INFVIGLPGETKETFRLNIEFLRRLLNDDVWVRRVNIRQVLVLPPTPLWNQADEIRQLLR 428

Query: 388 AER--LLCLQKKLREQQVSFNDACV---GQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
             R   L  +  +R          +   G I+  +  +     G    +      ++   
Sbjct: 429 VHRKYFLAFKYWVRRNFDHEMLRRIVPKGTILRRVFTETHYGDGTYARQVGSYPLLIYIP 488

Query: 443 KNHNIGDIIKVRITDVKISTLYG 465
               +G  I + +++    ++ G
Sbjct: 489 TKIELGRWIDIVVSEHGFRSVIG 511


>gi|282899109|ref|ZP_06307090.1| Cobalamin B12-binding [Cylindrospermopsis raciborskii CS-505]
 gi|281196025|gb|EFA70941.1| Cobalamin B12-binding [Cylindrospermopsis raciborskii CS-505]
          Length = 526

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 48/342 (14%), Positives = 104/342 (30%), Gaps = 38/342 (11%)

Query: 62  ADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRS 121
           AD+++ +   +      +    L ++R  K          LV + G    +  +E+    
Sbjct: 66  ADVVIFSAMIV------QKQDLLDQVREAKRRGK------LVALGGPYPTSTPQEVQEA- 112

Query: 122 PIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGV-TAFL 180
              + ++  +    LP  +     G++      + +       I               +
Sbjct: 113 -GADFLILDEGEITLPMFVTAIESGQKSGIFRATEKPDVTSTPIPRFDLLDFSAYDMMSV 171

Query: 181 TIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
               GC   C FC +    G +  +++  Q++ E   L   G      +  +        
Sbjct: 172 QFSRGCPFQCEFCDIIVLYGRKPRTKTPEQLLAELDCLYRLGWRRGIFMVDD-------N 224

Query: 240 LDGEKCTFSDLLYSL----SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPV 295
             G K     LL  L    +E +   R     S        L++   +       + L +
Sbjct: 225 FIGNKRNVKLLLKELKVWMAEHEYPFRFDTEASIDLAQDPELMELMVESG--FAAVFLGI 282

Query: 296 QSGSDRILKSMNRR-HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           ++  +  L+   +  +T     + +  I  ++  +   + FI+GF GE        +   
Sbjct: 283 ETPDEDSLQLTKKFQNTRSSLAESVQTI--IKTGLRPMAGFIIGFDGEQKGAGDRIVRFA 340

Query: 355 DKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQK 396
           ++                T   + L+      K  RL   Q 
Sbjct: 341 EQAAIPSTTFAMLQALPNTALWHRLQ------KEGRLRENQD 376


>gi|254192732|ref|ZP_04899168.1| B12-binding/radical SAM domain protein [Burkholderia pseudomallei
           S13]
 gi|169649487|gb|EDS82180.1| B12-binding/radical SAM domain protein [Burkholderia pseudomallei
           S13]
          Length = 647

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 52/312 (16%), Positives = 98/312 (31%), Gaps = 54/312 (17%)

Query: 95  IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF--------- 145
            +   DL V++ G  A     +IL R P  +++V  +    LP +L+             
Sbjct: 98  KRREPDLPVLLGGPHATMLHRQILERFPQFDIIVRYEADEILPAVLDCLEQRTFDVIPGL 157

Query: 146 ----------------GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKF 189
                             +V + D      ++   + D G +  R     +    GC   
Sbjct: 158 SWRATGRGAPLRFTDGKPKVEELDRLPIASYDHYPVDDLGLSMLR-----IEAGRGCPFA 212

Query: 190 CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSD 249
           CTFC        + S  L        +L                +      D        
Sbjct: 213 CTFCSTAGFF--QRSFRLKSAERLVHELDILHRRYRV-------SDFKLDHDMFTVNRHK 263

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
           ++     + G       ++    + + L++   D       L+  V++GS+R+     +R
Sbjct: 264 VMAFCEAVAGRGYRWRASARIDCVDEALLRKMADAG--CVNLYFGVETGSERMQTICRKR 321

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSD--FIVGFPGETDDDFRATMDLVDKIG-----YAQA 362
                  ++++ I +      I +   FI G+P E   D   T+D++ +         Q 
Sbjct: 322 ----LDLRLVEPILAAADSFGIKTTASFITGYPQECGQDQDDTLDMIGRCARRPSCLTQL 377

Query: 363 FSFKYSPRLGTP 374
                 P  GTP
Sbjct: 378 HMLA--PEPGTP 387


>gi|162455055|ref|YP_001617422.1| hypothetical protein sce6773 [Sorangium cellulosum 'So ce 56']
 gi|161165637|emb|CAN96942.1| hypothetical protein sce6773 [Sorangium cellulosum 'So ce 56']
          Length = 433

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 46/306 (15%), Positives = 94/306 (30%), Gaps = 24/306 (7%)

Query: 92  NSRIKEGGDLLVVVAGC--VAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149
            + +++ G   VV+  C  V     +    R   ++ +   +      +   RA    R+
Sbjct: 117 RATLRKLGVDAVVMGECEDVLVELADRPRSRWGEIDAIAWLEGDEARVQGGPRASDMARL 176

Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209
               +                    G  A +    GC   CTFC     R     R L  
Sbjct: 177 PALRWDEATVARHAHHHHRFDTAPIGPGAEVEASRGCPYHCTFCAKDNFRDGYRKRPLDV 236

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSH 269
           ++DE   L+  GV  +  + +     R             LL +L++      +      
Sbjct: 237 LLDEIDGLVAQGVRYVYFIDEIFLPDRP------------LLEALADRPVSFGV---QMR 281

Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH--TAYEYRQIIDRIRSVRP 327
             + S  ++   G        +   V+S +      + +R   +  +   ++   +   P
Sbjct: 282 VDNWSREMLDLLGRAG--CVSIEAGVESVTREGRSLLAKRCRLSTEQLGDLLIHAKKSVP 339

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
              + ++ I   P +   D  A  + + + G          P  G+P   M     ++  
Sbjct: 340 --FVQANLIQS-PTDDPADVAAFRERLRQHGVWANEPVPMFPYPGSPEYTMRWGTPDDEA 396

Query: 388 AERLLC 393
            ER + 
Sbjct: 397 WERSVA 402


>gi|53724938|ref|YP_101901.1| lipoyl synthase [Burkholderia mallei ATCC 23344]
 gi|67642407|ref|ZP_00441164.1| lipoyl synthase [Burkholderia mallei GB8 horse 4]
 gi|121598855|ref|YP_991569.1| lipoyl synthase [Burkholderia mallei SAVP1]
 gi|124384648|ref|YP_001027358.1| lipoyl synthase [Burkholderia mallei NCTC 10229]
 gi|126448176|ref|YP_001082703.1| lipoyl synthase [Burkholderia mallei NCTC 10247]
 gi|167003216|ref|ZP_02269006.1| lipoyl synthase [Burkholderia mallei PRL-20]
 gi|254176760|ref|ZP_04883417.1| lipoic acid synthetase [Burkholderia mallei ATCC 10399]
 gi|254202013|ref|ZP_04908377.1| lipoic acid synthetase [Burkholderia mallei FMH]
 gi|254207345|ref|ZP_04913696.1| lipoic acid synthetase [Burkholderia mallei JHU]
 gi|254357604|ref|ZP_04973878.1| lipoic acid synthetase [Burkholderia mallei 2002721280]
 gi|81605753|sp|Q62N16|LIPA_BURMA RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|166226349|sp|A3MR17|LIPA_BURM7 RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|166226350|sp|A2S5Y9|LIPA_BURM9 RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|166226351|sp|A1V016|LIPA_BURMS RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|52428361|gb|AAU48954.1| lipoic acid synthetase [Burkholderia mallei ATCC 23344]
 gi|121227665|gb|ABM50183.1| lipoic acid synthetase [Burkholderia mallei SAVP1]
 gi|124292668|gb|ABN01937.1| lipoyl synthase [Burkholderia mallei NCTC 10229]
 gi|126241046|gb|ABO04139.1| lipoyl synthase [Burkholderia mallei NCTC 10247]
 gi|147747907|gb|EDK54983.1| lipoic acid synthetase [Burkholderia mallei FMH]
 gi|147752887|gb|EDK59953.1| lipoic acid synthetase [Burkholderia mallei JHU]
 gi|148026668|gb|EDK84753.1| lipoic acid synthetase [Burkholderia mallei 2002721280]
 gi|160697801|gb|EDP87771.1| lipoic acid synthetase [Burkholderia mallei ATCC 10399]
 gi|238523556|gb|EEP86994.1| lipoyl synthase [Burkholderia mallei GB8 horse 4]
 gi|243061213|gb|EES43399.1| lipoyl synthase [Burkholderia mallei PRL-20]
          Length = 329

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 79/221 (35%), Gaps = 12/221 (5%)

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
           + +  ++++    E  S  + G    +G   F+ + + C + C FC V + R   +    
Sbjct: 64  KTILREHNLHTVCEEASCPNIGECFGKGTATFMIMGDKCTRRCPFCDVGHGRPDPL--DA 121

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
            +  + AR +    +  + +   +    R    DG    F + +  + E     R+   T
Sbjct: 122 DEPKNLARTIAALKLKYVVITSVD----RDDLRDGGAGHFVECIREVREQSPATRIEILT 177

Query: 268 SHPRD-MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
              R  +   L   +     +M +    V     R+ K            +++   +++ 
Sbjct: 178 PDFRGRLDRALAILNAAPPDVMNHNLETV----PRLYKEARPGSDYAHSLKLLKDFKALH 233

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           PD+A  S  +VG  GET D+    M  +           +Y
Sbjct: 234 PDVATKSGLMVGL-GETTDEILQVMRDLRAHDVDMLTIGQY 273


>gi|304316640|ref|YP_003851785.1| oxygen-independent coproporphyrinogen III oxidase
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
 gi|302778142|gb|ADL68701.1| oxygen-independent coproporphyrinogen III oxidase
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 376

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/201 (17%), Positives = 68/201 (33%), Gaps = 14/201 (6%)

Query: 186 CDKFCTFCVVPYTRGIEISRSL--SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
           C + C +C       +E S       ++ E R   D        L     +    G    
Sbjct: 13  CKRKCYYCDFNSYANMEKSLEPFKDAIMREIRNRKDE-------LKDIFTSIYIGGGTPN 65

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIK--AHGDLDVL-MPYLHLPVQSGSD 300
                 +   L EI     +        +++  LI          + +  + + +Q+  D
Sbjct: 66  VLPPFYIENILDEIYKYYDISNDAEISIELNPGLIDDEKLKTYKRIGINRISIGLQAWQD 125

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
           ++LK + R HT +++ +  D       +I I  D +   P +  DDF+ T+  V  +   
Sbjct: 126 KLLKKIGRIHTIHDFIENYDMATKYFDNINI--DIMYALPDQIFDDFKETLSNVVSLKPT 183

Query: 361 QAFSFKYSPRLGTPGSNMLEQ 381
               +      GT    + E+
Sbjct: 184 HISCYGLILEEGTVFYKLYEE 204


>gi|83720495|ref|YP_440944.1| lipoyl synthase [Burkholderia thailandensis E264]
 gi|167579658|ref|ZP_02372532.1| lipoyl synthase [Burkholderia thailandensis TXDOH]
 gi|257140401|ref|ZP_05588663.1| lipoyl synthase [Burkholderia thailandensis E264]
 gi|123740223|sp|Q2T1K5|LIPA_BURTA RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|83654320|gb|ABC38383.1| lipoic acid synthetase [Burkholderia thailandensis E264]
          Length = 329

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 79/221 (35%), Gaps = 12/221 (5%)

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
           + +  ++++    E  S  + G    +G   F+ + + C + C FC V + R   +    
Sbjct: 64  KTILREHNLHTVCEEASCPNIGECFGKGTATFMIMGDKCTRRCPFCDVGHGRPDPL--DA 121

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
            +  + AR +    +  + +   +    R    DG    F + +  + E     R+   T
Sbjct: 122 DEPKNLARTIAALKLKYVVITSVD----RDDLRDGGAGHFVECIREVREQSPATRIEILT 177

Query: 268 SHPRDMSDCLIKAH-GDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
              R   D  ++        +M +    V     R+ K            +++   +++ 
Sbjct: 178 PDFRGRLDRALEILNAAPPDVMNHNLETV----PRLYKEARPGSDYAHSLKLLKDFKALH 233

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           PD+A  S  +VG  GET D+    M  +           +Y
Sbjct: 234 PDVATKSGLMVGL-GETTDEILQVMRDLRAHDVDMLTIGQY 273


>gi|301168627|emb|CBW28217.1| lipoate synthase [Haemophilus influenzae 10810]
          Length = 320

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/214 (14%), Positives = 71/214 (33%), Gaps = 10/214 (4%)

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           + +    E  S  +       G   F+ +   C + C FC V    G  +     +    
Sbjct: 61  HGLHSVCEEASCPNLHECFNHGTATFMILGAICTRRCPFCDV--AHGKPLPPDPEEPQKL 118

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
           A  + D  +  + +   +    R    D     F++ + ++ E+   +++       R  
Sbjct: 119 AETIQDMKLKYVVITSVD----RDDLPDRGAGHFAECVKAVRELNPNIKIEILVPDFRGR 174

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
               ++   D     P +         R+ K +          +++   + + P+I   S
Sbjct: 175 ITQALEKLKDNP---PDVFNHNLENVPRLYKEIRPGADYEWSLKLLREFKEIFPNIPTKS 231

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
             +VG  GET+++    M  +   G       +Y
Sbjct: 232 GLMVGL-GETNEEILQVMQDLRDNGVTMLTLGQY 264


>gi|239502464|ref|ZP_04661774.1| lipoyl synthase [Acinetobacter baumannii AB900]
 gi|260554193|ref|ZP_05826450.1| lipoyl synthase [Acinetobacter sp. RUH2624]
 gi|260404664|gb|EEW98177.1| lipoyl synthase [Acinetobacter sp. RUH2624]
          Length = 337

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 64/208 (30%), Gaps = 12/208 (5%)

Query: 161 ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN 220
           E  +  +       G   F+ + + C + C FC V    G   +    +    A  + + 
Sbjct: 66  EEAACPNLPECFGGGTATFMIMGDICTRRCPFCDV--AHGRPNALDPDEPRHMAETIANL 123

Query: 221 GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKA 280
            +    +   +    R   LDG    F D +     +     L       R   D  ++ 
Sbjct: 124 KLKYAVITSVD----RDDLLDGGAQHFVDCIKEARALSPNTLLEILVPDFRGRMDIALRI 179

Query: 281 HGDLDVLMPYLHLPVQSGSDRIL-KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGF 339
             +     P         +   L K+M           ++   +   PDI      +VG 
Sbjct: 180 MTE----CPPDVFNHNIETVPRLYKAMRPGSDYQHSLNLLKMFKEYCPDIPTKCGLMVGI 235

Query: 340 PGETDDDFRATMDLVDKIGYAQAFSFKY 367
            GET+++  A +D +           +Y
Sbjct: 236 -GETEEEVIALLDDLRAHDVDYVTIGQY 262


>gi|53718054|ref|YP_107040.1| lipoyl synthase [Burkholderia pseudomallei K96243]
 gi|76810633|ref|YP_332042.1| lipoyl synthase [Burkholderia pseudomallei 1710b]
 gi|126438648|ref|YP_001057497.1| lipoyl synthase [Burkholderia pseudomallei 668]
 gi|126453169|ref|YP_001064747.1| lipoyl synthase [Burkholderia pseudomallei 1106a]
 gi|134279778|ref|ZP_01766490.1| lipoic acid synthetase [Burkholderia pseudomallei 305]
 gi|167717866|ref|ZP_02401102.1| lipoyl synthase [Burkholderia pseudomallei DM98]
 gi|167813990|ref|ZP_02445670.1| lipoyl synthase [Burkholderia pseudomallei 91]
 gi|167822511|ref|ZP_02453982.1| lipoyl synthase [Burkholderia pseudomallei 9]
 gi|167844094|ref|ZP_02469602.1| lipoyl synthase [Burkholderia pseudomallei B7210]
 gi|167892598|ref|ZP_02480000.1| lipoyl synthase [Burkholderia pseudomallei 7894]
 gi|167901094|ref|ZP_02488299.1| lipoyl synthase [Burkholderia pseudomallei NCTC 13177]
 gi|167909314|ref|ZP_02496405.1| lipoyl synthase [Burkholderia pseudomallei 112]
 gi|167917347|ref|ZP_02504438.1| lipoyl synthase [Burkholderia pseudomallei BCC215]
 gi|217419485|ref|ZP_03450991.1| lipoyl synthase [Burkholderia pseudomallei 576]
 gi|226193643|ref|ZP_03789246.1| lipoyl synthase [Burkholderia pseudomallei Pakistan 9]
 gi|237810648|ref|YP_002895099.1| lipoyl synthase [Burkholderia pseudomallei MSHR346]
 gi|242315192|ref|ZP_04814208.1| lipoyl synthase [Burkholderia pseudomallei 1106b]
 gi|254181983|ref|ZP_04888580.1| lipoic acid synthetase [Burkholderia pseudomallei 1655]
 gi|254187912|ref|ZP_04894424.1| lipoic acid synthetase [Burkholderia pseudomallei Pasteur 52237]
 gi|254196638|ref|ZP_04903062.1| lipoic acid synthetase [Burkholderia pseudomallei S13]
 gi|254258010|ref|ZP_04949064.1| lipoyl synthase [Burkholderia pseudomallei 1710a]
 gi|254295968|ref|ZP_04963425.1| lipoic acid synthetase [Burkholderia pseudomallei 406e]
 gi|55977878|sp|Q9EYP3|LIPA_BURPS RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|123758073|sp|Q3JWL1|LIPA_BURP1 RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|166226352|sp|A3NQX6|LIPA_BURP0 RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|166226353|sp|A3N576|LIPA_BURP6 RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|52208468|emb|CAH34402.1| lipoic acid synthetase [Burkholderia pseudomallei K96243]
 gi|76580086|gb|ABA49561.1| lipoic acid synthetase [Burkholderia pseudomallei 1710b]
 gi|126218141|gb|ABN81647.1| lipoyl synthase [Burkholderia pseudomallei 668]
 gi|126226811|gb|ABN90351.1| lipoyl synthase [Burkholderia pseudomallei 1106a]
 gi|134248978|gb|EBA49060.1| lipoic acid synthetase [Burkholderia pseudomallei 305]
 gi|157805709|gb|EDO82879.1| lipoic acid synthetase [Burkholderia pseudomallei 406e]
 gi|157935592|gb|EDO91262.1| lipoic acid synthetase [Burkholderia pseudomallei Pasteur 52237]
 gi|169653381|gb|EDS86074.1| lipoic acid synthetase [Burkholderia pseudomallei S13]
 gi|184212521|gb|EDU09564.1| lipoic acid synthetase [Burkholderia pseudomallei 1655]
 gi|217396789|gb|EEC36805.1| lipoyl synthase [Burkholderia pseudomallei 576]
 gi|225934221|gb|EEH30205.1| lipoyl synthase [Burkholderia pseudomallei Pakistan 9]
 gi|237503458|gb|ACQ95776.1| lipoyl synthase [Burkholderia pseudomallei MSHR346]
 gi|242138431|gb|EES24833.1| lipoyl synthase [Burkholderia pseudomallei 1106b]
 gi|254216699|gb|EET06083.1| lipoyl synthase [Burkholderia pseudomallei 1710a]
          Length = 329

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 79/221 (35%), Gaps = 12/221 (5%)

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
           + +  ++++    E  S  + G    +G   F+ + + C + C FC V + R   +    
Sbjct: 64  KTILREHNLHTVCEEASCPNIGECFGKGTATFMIMGDKCTRRCPFCDVGHGRPDPL--DA 121

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
            +  + AR +    +  + +   +    R    DG    F + +  + E     R+   T
Sbjct: 122 DEPKNLARTIAALKLKYVVITSVD----RDDLRDGGAGHFVECIREVREQSPATRIEILT 177

Query: 268 SHPRD-MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
              R  +   L   +     +M +    V     R+ K            +++   +++ 
Sbjct: 178 PDFRGRLDRALAILNAAPPDVMNHNLETV----PRLYKEARPGSDYAHSLKLLKDFKALH 233

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           PD+A  S  +VG  GET D+    M  +           +Y
Sbjct: 234 PDVATKSGLMVGL-GETTDEILQVMRDLRAHDVDMLTIGQY 273


>gi|320533979|ref|ZP_08034539.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Actinomyces sp. oral taxon 171 str. F0337]
 gi|320133809|gb|EFW26197.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Actinomyces sp. oral taxon 171 str. F0337]
          Length = 428

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 45/245 (18%), Positives = 80/245 (32%), Gaps = 18/245 (7%)

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC----VVPYTRGIEI 203
           + V        +     I       +R  + +L +   C   C +C        T G   
Sbjct: 5   QPVGDPLPGTGELPAQVIAPAPGGAERPFSVYLHVPY-CQVRCGYCDFNTYTNLTMGQGA 63

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS------DLLYSLSEI 257
           S      V      +      +  +G  V + R   + G   T         +L  + E 
Sbjct: 64  S--AEDFVGTLAGELRAARRAMDGVGLPVRSARTVFVGGGTPTMLPASDLVSMLELVREC 121

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
            GL      T+     S          +     +   +QS    +LK + R H      +
Sbjct: 122 FGLAANAEVTTEANPDSVDEAGLAALAEGGFSRVSFGMQSAVPHVLKVLERTHEPARVPR 181

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
           +++  R     ++ S D I G PGE+ +D++ ++D V +I      ++      GT    
Sbjct: 182 VVEWARRT--GLSTSLDLIYGAPGESLEDWQRSLDAVTRISPDHVSAYALVIEEGT---R 236

Query: 378 MLEQV 382
           M  QV
Sbjct: 237 MWGQV 241


>gi|306821560|ref|ZP_07455158.1| possible coproporphyrinogen dehydrogenase [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
 gi|304550305|gb|EFM38298.1| possible coproporphyrinogen dehydrogenase [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
          Length = 376

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/203 (18%), Positives = 82/203 (40%), Gaps = 14/203 (6%)

Query: 186 CDKFCTFCVV--PYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDG 242
           C+  C +C      +   E    +  ++ E +   +   + + T+    +       LD 
Sbjct: 13  CNSKCLYCDFDSHVSAYKERHSYIDALIKEIKLAKEKYDLKKYTIDTIFIGGGTPTVLDN 72

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY----LHLPVQSG 298
           +      L   L EI G         +  +++   I A   + +L       + + +QS 
Sbjct: 73  D-----LLEKLLFEIDGNFSFSDDLEYSIEINPNSI-AEEKIKILQNSRINRISIGLQSA 126

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           ++  LKS+ R H+  ++      ++    D  IS D ++G P +  + ++ T++ V K+ 
Sbjct: 127 NEVELKSLGRSHSYADFENTYSMLKKHGFD-NISVDLMMGIPNQNLNSYKNTLEKVLKLE 185

Query: 359 YAQAFSFKYSPRLGTPGSNMLEQ 381
            +   S+      GTP ++M E+
Sbjct: 186 PSHISSYMLIIEDGTPFADMYEK 208


>gi|262372359|ref|ZP_06065638.1| lipoyl synthase [Acinetobacter junii SH205]
 gi|262312384|gb|EEY93469.1| lipoyl synthase [Acinetobacter junii SH205]
          Length = 337

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/208 (15%), Positives = 65/208 (31%), Gaps = 12/208 (5%)

Query: 161 ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN 220
           E  +  +       G   F+ + + C + C FC V    G   +    +    A  + + 
Sbjct: 66  EEAACPNLPECFGGGTATFMIMGDICTRRCPFCDV--AHGRPNALDPDEPRHMAETISNL 123

Query: 221 GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKA 280
           G+    +   +    R   LDG    F D +     +     L       R   D  ++ 
Sbjct: 124 GLKYAVITSVD----RDDLLDGGAQHFVDCIKEARALSPKTLLEILVPDFRGRMDIALRI 179

Query: 281 HGDLDVLMPYLHLPVQSGSDRIL-KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGF 339
             +     P         +   L K+M           ++   +   PD+      +VG 
Sbjct: 180 MTE----CPPDVFNHNIETVPRLYKAMRPGSDYQHSLNLLKMFKEYCPDVPTKCGLMVGI 235

Query: 340 PGETDDDFRATMDLVDKIGYAQAFSFKY 367
            GET+++  + +D +           +Y
Sbjct: 236 -GETEEEVISLLDDLRAHDVDYVTIGQY 262


>gi|127511167|ref|YP_001092364.1| hypothetical protein Shew_0233 [Shewanella loihica PV-4]
 gi|126636462|gb|ABO22105.1| Radical SAM N-terminal domain protein [Shewanella loihica PV-4]
          Length = 780

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 51/293 (17%), Positives = 94/293 (32%), Gaps = 47/293 (16%)

Query: 113 EGEEILRRSPIVNVVVGPQTYYRLPELLERA--RFGKRVVDTDYSVEDKFERLSIVDGGY 170
               + +      + V P  +    + ++       KRV    Y  E       I     
Sbjct: 321 CARALFQPHGERAIWVNPPAWPLNTDEMDGVFDLAYKRVPHPVYGKEKIPAYDMI----- 375

Query: 171 NRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDN--GVCEIT- 226
                    + I  GC   C+FC +    G  I SRS   ++ E + + D   G   +  
Sbjct: 376 ------KTSINIMRGCFGGCSFCSITEHEGRIIQSRSQDSIIKEIKDIQDKVPGFTGVIS 429

Query: 227 -LLGQNVNAWR----------------------GKGLDGEKCTFSDLLYSLSEIKGLVRL 263
            L G   N +R                         LD       DL  +  ++ G+ ++
Sbjct: 430 DLGGPTANMYRLGCTSVKAESTCRRLSCVFPSICGHLDTNHQATIDLYRAARDVPGIKKV 489

Query: 264 RYTTSHPRDMSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRRH--TAYEYRQII 319
              +    D++    +   +L    +  YL +  +   +  L  M +    T  +++++ 
Sbjct: 490 LIASGVRYDLATEDPRYVKELASHHVGGYLKIAPEHTEEGPLNKMMKPGMGTYDKFKELF 549

Query: 320 DRI-RSVRPDIAISSDFIVGFPGETDDDFRATMDLV--DKIGYAQAFSFKYSP 369
           D+          +   FI   PG TD+D       +  +K    Q  +F  SP
Sbjct: 550 DKYSAEAGKKQYLIPYFISAHPGTTDEDMVNLALWLKGEKFKLDQVQNFYPSP 602


>gi|294139687|ref|YP_003555665.1| hypothetical protein SVI_0916 [Shewanella violacea DSS12]
 gi|293326156|dbj|BAJ00887.1| conserved hypothetical protein [Shewanella violacea DSS12]
          Length = 316

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 40/200 (20%), Positives = 69/200 (34%), Gaps = 16/200 (8%)

Query: 188 KFCTFCVV---PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK 244
             CT+C V    +  G E+S      +   R                         D  +
Sbjct: 43  GGCTYCNVASFSFEHGTELSIREQLKLGRERARGKTSKYIAYFQA------YTSTYDEYR 96

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV--LMPYLHLPVQSGSDRI 302
              +    ++S     +      + P  +SD +I          +  +L L +QS +D+ 
Sbjct: 97  VLKAKYDEAIS--DPDIVGLCVGTRPDCVSDEVIDLLLGYQNQGIEVWLELGLQSANDKT 154

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           LK +NR HT  +YR  + R R+    I + +  I+G PGE   D+ +++D +   G    
Sbjct: 155 LKRINRGHTFNDYRDTVLRARAK--GIKVCTHLILGLPGENHQDYLSSLDAILNTGVDGL 212

Query: 363 FSFKYSPRLG-TPGSNMLEQ 381
                    G T        
Sbjct: 213 KLHPLHIVEGSTMAKAWRND 232


>gi|167617737|ref|ZP_02386368.1| lipoyl synthase [Burkholderia thailandensis Bt4]
          Length = 329

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 79/221 (35%), Gaps = 12/221 (5%)

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
           + +  ++++    E  S  + G    +G   F+ + + C + C FC V + R   +    
Sbjct: 64  KTILREHNLHTVCEEASCPNIGECFGKGTATFMIMGDKCTRRCPFCDVGHGRPDPL--DA 121

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
            +  + AR +    +  + +   +    R    DG    F + +  + E     R+   T
Sbjct: 122 DEPKNLARTIAALKLKYVVITSVD----RDDLRDGGAGHFVECIREVREQSPATRIEILT 177

Query: 268 SHPRDMSDCLIKAH-GDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
              R   D  ++        +M +    V     R+ K            +++   +++ 
Sbjct: 178 PDFRGRLDRALEILNAAPPDVMNHNLETV----PRLYKEARPGSDYAHSLKLLKDFKALH 233

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           PD+A  S  +VG  GET D+    M  +           +Y
Sbjct: 234 PDVATKSGLMVGL-GETTDEILQVMRDLRAHDVDMLTIGQY 273


>gi|116075697|ref|ZP_01472956.1| hypothetical protein RS9916_39566 [Synechococcus sp. RS9916]
 gi|116067012|gb|EAU72767.1| hypothetical protein RS9916_39566 [Synechococcus sp. RS9916]
          Length = 535

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/226 (16%), Positives = 75/226 (33%), Gaps = 17/226 (7%)

Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
           P L+      +     DY   D    +      Y         +  + GC   C +CV  
Sbjct: 211 PGLIHEQPESRPKTACDY---DYIASIWPQLNWYLEGGDFYVGVQTKRGCPHNCCYCVYT 267

Query: 197 YTRGIEISR-SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
              G ++    +++VV E R+L D GV             R    D +     +LL ++ 
Sbjct: 268 VVEGKQVRLNPVAEVVKEMRQLYDRGVRGFWFTDAQFIPARRYIEDAK-----ELLRAV- 321

Query: 256 EIKGLVRLRY-TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
           + +GL  +R+       ++   L +   +    M Y  + + SGS  +++ M   +    
Sbjct: 322 KAEGLTGIRWAAYIRADNLDPELAQLMVETG--MSYFEIGITSGSQELVRKMRMGYNLRT 379

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPG--ETDDDFRATMDLVDKIG 358
             +    + +              F    E  +  R T+    ++ 
Sbjct: 380 VLESCRMLAAA--GFRDHVSVNYSFNVIDERPETIRQTVAYHREME 423


>gi|253584036|ref|ZP_04861234.1| Fe-hydrogenase assembly protein [Fusobacterium varium ATCC 27725]
 gi|251834608|gb|EES63171.1| Fe-hydrogenase assembly protein [Fusobacterium varium ATCC 27725]
          Length = 361

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 56/320 (17%), Positives = 115/320 (35%), Gaps = 46/320 (14%)

Query: 134 YRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYN-------RKRGVTAFLTIQEGC 186
            R+ E+LE+ +  +  + T   + D  E   +    Y        RK      + I   C
Sbjct: 1   MRIKEILEKEKLTRDDLITLMKISDPKELDMLYKKAYEVKTKEVGRKVYYRGLIEISNVC 60

Query: 187 DKFCTFCVVPYTRGI-EI-SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK 244
            K C +C +       E  S S  +V+   + + +N    + L         G+  D E 
Sbjct: 61  IKNCNYCGIRKGNSKVERFSMSKDEVMKGVKWIYENNYGSLALQS-------GERQDKEF 113

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTS-----HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
             F +    + EIK L   R   +        +       A            L ++S +
Sbjct: 114 TDFVE--DIIKEIKKLSNGRLGITLSLGEQSFETYKRWFDAGAHR------YLLRIESTN 165

Query: 300 DRILKSMN---RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
             + + ++    +HT    ++ ++ +R +     + +  ++G PG+T++D    +     
Sbjct: 166 KELFQRLHPQDGKHTFEVRKKCLEYLREI--GYQVGTGVMIGVPGQTEEDLVDDILFYRD 223

Query: 357 IGYAQAFSFKYSPRLGTPGSNMLEQV--DENVKAE---RLLCLQKK-LREQQVSFNDACV 410
           +         Y     TP     + +      + E   +++ L +  L++  ++   A  
Sbjct: 224 MKIDMIGMGPYIIHKDTPLGQEWKDIVLPSEKRVELGLKMIALTRIFLKDVNIAATTALQ 283

Query: 411 GQIIEVLIEKHGKEKGKLVG 430
           G      ++ HG+EKG L G
Sbjct: 284 G------LDSHGREKGLLAG 297


>gi|225573017|ref|ZP_03781772.1| hypothetical protein RUMHYD_01208 [Blautia hydrogenotrophica DSM
           10507]
 gi|225039631|gb|EEG49877.1| hypothetical protein RUMHYD_01208 [Blautia hydrogenotrophica DSM
           10507]
          Length = 387

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 42/227 (18%), Positives = 75/227 (33%), Gaps = 22/227 (9%)

Query: 186 CDKFCTFCVVPYTRGIE----ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD 241
           C K C +C   +  G       S  +  V+ E R L      E        N        
Sbjct: 24  CVKKCDYCD--FLSGPYSEDIRSAYVQAVLKEIRSLGRRERAE--------NWKVRSIFF 73

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY-------LHLP 294
           G           +++I   +R  +      ++S          + L  Y       L L 
Sbjct: 74  GGGTPSLMNGEEITQILDEIRRDFQFEPEAEISLEANPGTLTENKLKAYQSGGINRLSLG 133

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
            QS  D+ LK + R HT  E+ +     R       I+ D + G PG++  D+   ++ V
Sbjct: 134 CQSAKDQELKRLGRIHTWEEFLKSYHMAREAGFQ-NINVDLMSGIPGQSVLDWEENLEAV 192

Query: 355 DKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQ 401
             +      ++      GTP       + +     R+    +++ E+
Sbjct: 193 LALTPEHISAYSLIVEEGTPFYERELNLPDEDSERRMYERTREILEE 239


>gi|224367787|ref|YP_002601950.1| radical SAM domain protein [Desulfobacterium autotrophicum HRM2]
 gi|223690503|gb|ACN13786.1| radical SAM domain protein [Desulfobacterium autotrophicum HRM2]
          Length = 857

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 82/221 (37%), Gaps = 24/221 (10%)

Query: 139 LLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
           L       KR + TD +    F    IV  G      +   L I  GC + C FC     
Sbjct: 229 LFPEHATVKRAILTDLAK-VPFPTEPIVPFGKPVHDRLR--LEIARGCSRGCRFCQAGII 285

Query: 199 RGIEISRSLSQVVDEAR-KLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257
                 R++  +V+  R  +   G  +++LL  +          G+    + L+  L  I
Sbjct: 286 YRPVRERTVPDLVEITRTAMAATGYSDVSLLSLST---------GDYSDLAHLMEELLAI 336

Query: 258 --KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
                  +   +     ++  L++    +        +  ++G+ R+  ++N+  T    
Sbjct: 337 NSDQCTAISLPSIRAGRLTPELMRIIKRVKK--TGFTIAPEAGTQRLRDAINKNITE--- 391

Query: 316 RQIIDRIRSVRPDIA---ISSDFIVGFPGETDDDFRATMDL 353
           R I+D + +   D+    I   F+ G P ET +D +   DL
Sbjct: 392 RDIVDTVTNAF-DLGWRMIKLYFMNGLPTETQEDIQGICDL 431


>gi|150004023|ref|YP_001298767.1| Fe-S oxidoreductase family protein [Bacteroides vulgatus ATCC 8482]
 gi|149932447|gb|ABR39145.1| Fe-S oxidoreductase family 2 [Bacteroides vulgatus ATCC 8482]
          Length = 545

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 47/272 (17%), Positives = 91/272 (33%), Gaps = 31/272 (11%)

Query: 99  GDLLVVVAGCVAQAEGEEILRRSPIVNVVV----------------GPQTYYRLPELLER 142
            +  +V+ G     + EE LR++P V+ V                  P+ ++ +P L   
Sbjct: 84  PEACLVLGGPEFLGDNEEFLRKNPFVDCVFRGEGEEVFPQWLTCWNHPEQWHTVPGLCYL 143

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
               +   +    V +    +      +         L    GC   C FC V       
Sbjct: 144 TPNKEYKDNGIARVLNFAGLVPPEQSRFFNWSKPFVQLETTRGCFNTCAFC-VSGGEKPV 202

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            + S+  + +  + +  +G+  + +L +  N               +LL    E    +R
Sbjct: 203 RTLSIESIRERLQLIHAHGIKNVRVLDRTFNY--------NPRRAKELLRLFLEFHPDIR 254

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
                 HP  +S+ L +    L   + +L   +QS  + +L+   R     +    + R 
Sbjct: 255 FHLE-IHPALLSEELKEELSLLPKGLLHLEAGIQSLREPVLEKSRRMGKLSDALDGL-RF 312

Query: 323 RSVRPDIAISSDFIVGFP----GETDDDFRAT 350
               P++   +D I G P     E  +D R  
Sbjct: 313 LCALPNMETHADLIAGLPLYHLHEIFEDVRTL 344


>gi|294778061|ref|ZP_06743495.1| radical SAM domain protein [Bacteroides vulgatus PC510]
 gi|294448119|gb|EFG16685.1| radical SAM domain protein [Bacteroides vulgatus PC510]
          Length = 545

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 47/272 (17%), Positives = 91/272 (33%), Gaps = 31/272 (11%)

Query: 99  GDLLVVVAGCVAQAEGEEILRRSPIVNVVV----------------GPQTYYRLPELLER 142
            +  +V+ G     + EE LR++P V+ V                  P+ ++ +P L   
Sbjct: 84  PEACLVLGGPEFLGDNEEFLRKNPFVDCVFRGEGEEVFPQWLTCWNHPEQWHTVPGLCYL 143

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
               +   +    V +    +      +         L    GC   C FC V       
Sbjct: 144 TPNKEYKDNGIARVLNFAGLVPPEQSRFFNWSKPFVQLETTRGCFNTCAFC-VSGGEKPV 202

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            + S+  + +  + +  +G+  + +L +  N               +LL    E    +R
Sbjct: 203 RTLSIESIRERLQLIHAHGIKNVRVLDRTFNY--------NPRRAKELLRLFLEFHPDIR 254

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
                 HP  +S+ L +    L   + +L   +QS  + +L+   R     +    + R 
Sbjct: 255 FHLE-IHPALLSEELKEELSLLPKGLLHLEAGIQSLREPVLEKSRRMGKLSDALDGL-RF 312

Query: 323 RSVRPDIAISSDFIVGFP----GETDDDFRAT 350
               P++   +D I G P     E  +D R  
Sbjct: 313 LCALPNMETHADLIAGLPLYHLHEIFEDVRTL 344


>gi|291521659|emb|CBK79952.1| Fe-S oxidoreductase [Coprococcus catus GD/7]
          Length = 611

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 61/359 (16%), Positives = 122/359 (33%), Gaps = 45/359 (12%)

Query: 37  NVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIK 96
           N Y +  +    +          + AD++   +C+I           +G +  L     +
Sbjct: 41  NQY-TEDILADLYK---------EKADMVAF-SCYIWN---------MGMVEELTELLHQ 80

Query: 97  EGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE--------------- 141
              D+ +   G     +  E L R+P V  V+  +      EL++               
Sbjct: 81  IRPDMPIWFGGPEVSYDAAECLERNPGVTGVIRGEGEETFHELMQYYIDGSGKLEDIRGI 140

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
             R   ++VD  +       ++  V    N  +    +     GC   C++C+       
Sbjct: 141 VYRENGQLVDNGWREVMDLNKVPFVYEDMNDFKNKIIYYETSRGCPFSCSYCL-SSVDKK 199

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
              R +S V  E +  ID+ V ++  + +  N         +K   +   Y  +   G+ 
Sbjct: 200 VRLRDMSLVEKELQFFIDHEVPQVKFVDRTFNCN-------KKHAMAIWRYIKAHDNGIT 252

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
              +         + L     D+   +  L + VQS +D  ++ ++R        + +  
Sbjct: 253 NFHFEIGADLLDDEEL-AILSDMRPGLVQLEIGVQSTNDATIQEVSRTMRLDRLAKAVHT 311

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           + +V  +I    D I G P E  D FR + + V ++   Q          G+   +M E
Sbjct: 312 V-NVGHNIHQHLDLIAGLPYEDYDRFRQSFNDVYQMEPEQLQLGFLKVLKGSRMYDMAE 369


>gi|254882921|ref|ZP_05255631.1| Fe-S oxidoreductase family 2 [Bacteroides sp. 4_3_47FAA]
 gi|319639727|ref|ZP_07994459.1| Fe-S oxidoreductase family 2 [Bacteroides sp. 3_1_40A]
 gi|254835714|gb|EET16023.1| Fe-S oxidoreductase family 2 [Bacteroides sp. 4_3_47FAA]
 gi|317388643|gb|EFV69490.1| Fe-S oxidoreductase family 2 [Bacteroides sp. 3_1_40A]
          Length = 545

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 47/272 (17%), Positives = 91/272 (33%), Gaps = 31/272 (11%)

Query: 99  GDLLVVVAGCVAQAEGEEILRRSPIVNVVV----------------GPQTYYRLPELLER 142
            +  +V+ G     + EE LR++P V+ V                  P+ ++ +P L   
Sbjct: 84  PEACLVLGGPEFLGDNEEFLRKNPFVDCVFRGEGEEVFPQWLTCWNHPEQWHTVPGLCYL 143

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
               +   +    V +    +      +         L    GC   C FC V       
Sbjct: 144 TPNKEYKDNGIARVLNFAGLVPPEQSRFFNWSKPFVQLETTRGCFNTCAFC-VSGGEKPV 202

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            + S+  + +  + +  +G+  + +L +  N               +LL    E    +R
Sbjct: 203 RTLSIESIRERLQLIHAHGIKNVRVLDRTFNY--------NPRRAKELLRLFLEFHPDIR 254

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
                 HP  +S+ L +    L   + +L   +QS  + +L+   R     +    + R 
Sbjct: 255 FHLE-IHPALLSEELKEELSLLPKGLLHLEAGIQSLREPVLEKSRRMGKLSDALDGL-RF 312

Query: 323 RSVRPDIAISSDFIVGFP----GETDDDFRAT 350
               P++   +D I G P     E  +D R  
Sbjct: 313 LCALPNMETHADLIAGLPLYHLHEIFEDVRTL 344


>gi|229592795|ref|YP_002874914.1| lipoyl synthase [Pseudomonas fluorescens SBW25]
 gi|259494939|sp|C3K2L8|LIPA_PSEFS RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|229364661|emb|CAY52590.1| lipoyl synthase [Pseudomonas fluorescens SBW25]
          Length = 341

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 36/215 (16%), Positives = 75/215 (34%), Gaps = 12/215 (5%)

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           + +    E  S  + G     G   F+ + + C + C FC V + R   +   +++    
Sbjct: 79  HKLHSVCEEASCPNLGECFSGGTATFMIMGDICTRRCPFCDVGHGRPKPL--DVNEPESL 136

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD- 272
           A  + D  +  + +   +    R    DG    F+D +  + ++   V L       R  
Sbjct: 137 AIAIADLKLKYVVITSVD----RDDLRDGGAQHFADCIREIRKLSPNVMLETLVPDYRGR 192

Query: 273 MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAIS 332
           M   L     +   +  +    V     R+ K+            ++ + + + P I   
Sbjct: 193 MDVALEITAAEPPDVFNHNLETV----PRLYKAARPGSDYQWSLTLLQKFKQMMPHIPTK 248

Query: 333 SDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           S  ++G  GETD++    M  + +         +Y
Sbjct: 249 SGLMLGL-GETDEEVIEVMKRMREHDIDMLTLGQY 282


>gi|126656971|ref|ZP_01728149.1| Fe-S protein, radical SAM family [Cyanothece sp. CCY0110]
 gi|126621809|gb|EAZ92518.1| Fe-S protein, radical SAM family [Cyanothece sp. CCY0110]
          Length = 469

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 55/335 (16%), Positives = 104/335 (31%), Gaps = 37/335 (11%)

Query: 48  FFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAG 107
              +  E +N  DD DL+++                    R  + +         VV+ G
Sbjct: 46  LQDEHVETLNLNDDPDLVII------------QVYITSAYRAYQLADYYRQKGSYVVLGG 93

Query: 108 CVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVD 167
               A  +E    +    + +GP      P  L+  + G        S +   E +  V 
Sbjct: 94  LHVTALPQEAAHHAD--TIFLGPGE-DTWPLFLQDFKTGNPQ-KIYQSKQRSLEDVPPVR 149

Query: 168 GGYNRKRGVTAF--LTIQEGCDKFCTFCVVPYTRGIEISR---SLSQVVDEARKLIDNGV 222
               ++        + +  GC   C FC          S     +   + E  +L     
Sbjct: 150 RDLIKRNLYLVPNSIVVSRGCPHHCDFCYKDAFYRPGKSFYTQKVDDALAEIERLPG--- 206

Query: 223 CEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHG 282
             +  L  ++         G +   S L   +  + G V     T         L KA  
Sbjct: 207 KHLYFLDDHLF--------GNEVFSSALFEGMKGM-GRVWQAAATVESILKPGLLEKAV- 256

Query: 283 DLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGE 342
             +  +  L +  ++     LK  ++ H       +  + R    ++ ++S F+ G   +
Sbjct: 257 --ESGLRSLFVGFETLDFNNLKEQHKYHNLNRDYSLAIK-RLHDHNVMVNSSFVFGMDND 313

Query: 343 TDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
            +  F+ T+D     G   A     +P  GTP  +
Sbjct: 314 DETVFQRTVDWAISQGLETATFHILTPYPGTPLYD 348


>gi|283138928|gb|ADB12531.1| putative radical SAM domain protein [uncultured bacterium 9F08]
          Length = 717

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 50/344 (14%), Positives = 103/344 (29%), Gaps = 48/344 (13%)

Query: 115 EEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKR 174
           ++        + V   +T       L +A   ++V      +    + L  V      ++
Sbjct: 294 KDDPVMYAHASRVFHLETNPGNARPLVQAHANRQVWLNPPPLPLSTKELDRVFEMPYTRK 353

Query: 175 GVTAF--------------LTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLID 219
              A+              + I  GC   CTFC +    G  + +RS   +V E   + D
Sbjct: 354 PHPAYGKARIPAYEMIRFSVNIMRGCFGGCTFCSITEHEGRIVQNRSEDSIVREVEAIRD 413

Query: 220 ----NGVCEITLLGQNVNAWR----------------------GKGLDGEKCTFSDLLYS 253
                      L G   N WR                         L+ ++     L   
Sbjct: 414 LTPGFSGNISDLGGPTANMWRLRCKEVKIESACRRLSCVYPDICINLNTDQTPLIHLYRR 473

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRRH- 310
           +  + G+ R+   +    D++        +L    +  YL +  +      L  M +   
Sbjct: 474 VRGLDGVKRVFIASGLRYDLAVRTPDYVRELVTHHVGGYLKIAPEHSESGPLSHMMKPGM 533

Query: 311 -TAYEYRQIIDRI-RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK--IGYAQAFSFK 366
            +   ++ + ++  R    +  +   FI   PG +D D       + +      Q  SF 
Sbjct: 534 GSYERFKTMFEKYSREAGKEQYLIPYFIAAHPGTSDADMMNLALWLKQNSFRLDQVQSFI 593

Query: 367 YSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACV 410
            SP           +        +   ++  + E++   + A +
Sbjct: 594 PSPMAIASAMYYSGKNPLRKVHRQSGDVETPIGERRRRLHKAFL 637


>gi|163753823|ref|ZP_02160946.1| Fe-S protein, radical SAM family [Kordia algicida OT-1]
 gi|161326037|gb|EDP97363.1| Fe-S protein, radical SAM family [Kordia algicida OT-1]
          Length = 475

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 58/337 (17%), Positives = 114/337 (33%), Gaps = 39/337 (11%)

Query: 72  IREKAAEKVYSFLGRIRNLKNSRIKEGGDLL-VVVAGCVAQAEGEEILRRSPIVNVVVGP 130
           +  +A +K+   +  I    ++ +     L   +     AQ +GE+  +   +V      
Sbjct: 79  VVTQAVKKMRKDIPVIWGGWHTSLFPKQTLKDEICIDVTAQGQGEDTFK--ELVEAYATT 136

Query: 131 QTYYRLPELLERARFGKRV-------VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQ 183
                +  +  R   G+ V       V  D   +  +E + +      + R    +++  
Sbjct: 137 GDISEIKGICYRNDEGEIVKNPPRTIVAMDTFADINYELIDVEKYFEKKGRRQLDYIS-S 195

Query: 184 EGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
            GC   CTFC  P+    + +    +++      +        L  Q+   +        
Sbjct: 196 TGCYFRCTFCADPFVYNRKWTAISPEIMVNKLAELHEKYKFTDLNLQDETYF-------- 247

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY----LHLPVQSGS 299
             T+ D +  +SE      L +T +           +  D  +        L + V+SGS
Sbjct: 248 --TYRDRVIEISERMIEKGLNFTWAATMRADQGSRMSVEDFKICAKSGLRRLLIGVESGS 305

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
             ++  + +     +     +R + +   IA+   FIVGFP ETD     T+ +   +  
Sbjct: 306 QEMMNWLKKDIKVEQVYMCAERCKDL--GIAVQFPFIVGFPEETDKSIEETVKVALDLNS 363

Query: 360 AQAF----SFKYSPRLGT--------PGSNMLEQVDE 384
                    F + P  GT         G  + E V E
Sbjct: 364 MHPNFHTPIFYFKPYPGTTITDNVVKEGYKLPETVHE 400


>gi|253567651|ref|ZP_04845062.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|251841724|gb|EES69804.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 620

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 47/271 (17%), Positives = 90/271 (33%), Gaps = 44/271 (16%)

Query: 151 DTDYSVEDKFERLSIVDGGYNR---KRGVTAFLTIQEGCDKFCTFCVVPYTRGIE-ISRS 206
           + D+S +  + RL        R      +   + I  GC   C FC +   +G   +SRS
Sbjct: 287 ELDHSYDLPYTRLPHPKYKGKRIPAYDMIKFSVNIHRGCFGGCAFCTISAHQGKFIVSRS 346

Query: 207 LSQVVDEARKLI---DNGVCEITLLGQNVNAWRGKGLDGEKCT----------------- 246
              +++E ++++   D       L G + N ++ KG D   C                  
Sbjct: 347 KKSILNEVKEVMQLPDFKGYLSDLGGPSANMYQMKGKDEAICKKCKRPSCIHPKVCPNLN 406

Query: 247 -----FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL---------- 291
                  D+  ++  I G+ +    +    D+     K          Y           
Sbjct: 407 SDHRPLLDIYKAVDAIPGIKKSFIGSGVRYDLLLHQSKDAATNRSTAEYTRELIVNHVSG 466

Query: 292 --HLPVQSGSDRILKSMNRRH--TAYEYRQIIDRI-RSVRPDIAISSDFIVGFPGETDDD 346
              +  +  SDR+L  M +        +++I DRI R       +   FI   PG  ++D
Sbjct: 467 RLKVAPEHTSDRVLSIMRKPSFEQFETFKKIFDRINREENLRQQLIPYFISSHPGCKEED 526

Query: 347 FRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
                 +  ++ +       ++P   T  + 
Sbjct: 527 MAELAVITKRLDFHLEQVQDFTPTPMTVATE 557


>gi|311109418|ref|YP_003982271.1| lipoic acid synthetase [Achromobacter xylosoxidans A8]
 gi|310764107|gb|ADP19556.1| lipoic acid synthetase [Achromobacter xylosoxidans A8]
          Length = 334

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 43/252 (17%), Positives = 90/252 (35%), Gaps = 23/252 (9%)

Query: 126 VVVGPQTYYRLPELL--ERARFGKRVVDT-----DYSVEDKFERLSIVDGGYNRKRGVTA 178
           + + P    + PE +  + A  G R  D      ++++    E  S  + G    +G   
Sbjct: 40  IKIVPAERLKKPEWIRVKAAAPGSRFYDIKRILREHNLHTVCEEASCPNIGECFGKGTAT 99

Query: 179 FLTIQEGCDKFCTFCVVPYTRGIEISRSLS--QVVDEARKLIDNGVCEITLLGQNVNAWR 236
           F+ + + C + C FC V + R       L   + ++ AR +    +  + +   +    R
Sbjct: 100 FMIMGDKCTRRCPFCDVGHGRPD----PLDTNEPLNLARTIAAMKLSYVVITSVD----R 151

Query: 237 GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD-MSDCLIKAHGDLDVLMPYLHLPV 295
               DG    F D +  + E+    R+       R  +   L   +     +M +    V
Sbjct: 152 DDLRDGGAGHFVDCITHIRELSPTTRIEVLVPDFRGRLDRALTILNAGPPDVMNHNLETV 211

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
                R+ K            +++   + + P++   S  ++G  GETD++    M  + 
Sbjct: 212 ----PRLYKQARPGSDYMHSLKLLAEFKQLHPEVPTKSGLMLGL-GETDEEILQVMRDMR 266

Query: 356 KIGYAQAFSFKY 367
           +         +Y
Sbjct: 267 EHNVDMLTIGQY 278


>gi|198275678|ref|ZP_03208209.1| hypothetical protein BACPLE_01850 [Bacteroides plebeius DSM 17135]
 gi|198271307|gb|EDY95577.1| hypothetical protein BACPLE_01850 [Bacteroides plebeius DSM 17135]
          Length = 617

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 44/312 (14%), Positives = 97/312 (31%), Gaps = 66/312 (21%)

Query: 126 VVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNR-------KRGVTA 178
            +      Y    +L++      V +  Y    + E     D  Y R        + + A
Sbjct: 251 HIEEESNRYAAARILQQVGKQAVVTNPPYPPMTQGELDMSFDLPYTRLPHPKYKNKRIPA 310

Query: 179 F------LTIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVCEITLL--- 228
           +      + I  GC   C FC +   +G   +SRS   ++ E + + +    +  L    
Sbjct: 311 YEMIKFSVNIHRGCFGGCAFCTISAHQGKFIVSRSKESILKEVKAIAEMPDFKGYLSDLG 370

Query: 229 GQNVNAWRGKGLDGEKCT----------------------FSDLLYSLSEIKGLVRLRY- 265
           G + N ++  G D   C                         ++ +++  + G+ +    
Sbjct: 371 GPSANMYQMGGKDTALCRRCKRPSCIHPKVCPNLNTDHQPLLEIYHAVDSLPGIKKSFIG 430

Query: 266 ----------------TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
                           T    ++ +  LI        +   L +  +  SD++L  M + 
Sbjct: 431 SGVRYDLLLHQSKDAKTNQSTKEYTRELI-----TRHVSGRLKVAPEHTSDKVLYLMRKP 485

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSD----FIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
               ++ +       +  +  +       FI   PG T++D      +  K+ +      
Sbjct: 486 -PFEQFYEFKRIFDKINKEAGLRQQIIPYFISSHPGCTEEDMAELAVITKKLDFHLEQVQ 544

Query: 366 KYSPRLGTPGSN 377
            ++P   T  + 
Sbjct: 545 DFTPTPMTVSTE 556


>gi|183981707|ref|YP_001849998.1| methyltransferase [Mycobacterium marinum M]
 gi|183175033|gb|ACC40143.1| methyltransferase [Mycobacterium marinum M]
          Length = 498

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 54/323 (16%), Positives = 112/323 (34%), Gaps = 35/323 (10%)

Query: 79  KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPE 138
                L  +  L     +   D+ + +   +A    E ILR+    + V+         +
Sbjct: 90  SCIDTLPEVLWLAQRVRETWDDVQIALGNAIATLNYERILRQHDCFDFVIVGDAEVGFTK 149

Query: 139 LLERARFGKRVVDTD-----------------YSVEDKFERLSIVDGGYNRKRGVTAFLT 181
           L      G  + D                       D+  R +  +       G +A + 
Sbjct: 150 LANAVANGAALDDVPGLARRDDRGQIICSPSRLIDLDELPRPARDELPSVLADGFSAAVF 209

Query: 182 IQEGCDKFCTFCVVPYT-----RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR 236
              GC   CTFC          R    ++S+  VVDE   L  +       +  ++   +
Sbjct: 210 STRGCPYRCTFCGTGAMSAMLGRNSYRAKSVDAVVDEIAYLKSDFDIGFLCITDDLFISK 269

Query: 237 GKGLDGEKCTFSD-LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPV 295
                     F+D ++ S  ++K ++ +R  +    ++   L KA       +  + + +
Sbjct: 270 HPSSQQRAAEFADAMINSGVDVKFMMDIRLDSVVDLELFKHLHKA------GLRRVFVGL 323

Query: 296 QSGSDRILKSMNRR--HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
           ++GS   L++  ++  +   +    I+ ++ V  D+   +  I+  P    D+ R T  L
Sbjct: 324 ETGSYDQLRAYRKQIINRGQDAADTINALQQVGVDVIPGT--IMFHPTVQPDELRETARL 381

Query: 354 VDKIGYAQAFSFKY--SPRLGTP 374
           +    +   + F    +P  GTP
Sbjct: 382 LRATKFISTYKFMGKITPYPGTP 404


>gi|157960108|ref|YP_001500142.1| hypothetical protein Spea_0279 [Shewanella pealeana ATCC 700345]
 gi|157845108|gb|ABV85607.1| Radical SAM domain protein [Shewanella pealeana ATCC 700345]
          Length = 777

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 59/378 (15%), Positives = 120/378 (31%), Gaps = 53/378 (14%)

Query: 39  YDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEG 98
            DS ++ D       + + +   AD +    C       ++        + +     +  
Sbjct: 231 VDSRKI-DQLHKI--DPIPNPYGADDV---GCKNLSGPTDEKIFDNDAPKAISVQPARPK 284

Query: 99  GDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVED 158
                 V     +   E+    +    ++   Q       L ++       V+      +
Sbjct: 285 PWEKTYVLLPSYEKVSEDKYLYAHASRILHQEQNPGCARALFQKHAERAIWVNPPAWPLN 344

Query: 159 KFERLSIVDGGYNR-------KRGVTAF------LTIQEGCDKFCTFCVVPYTRGIEI-S 204
             E   + D  Y R       K  + A+      + I  GC   C+FC +    G  I S
Sbjct: 345 TDEMDGVFDLAYQRVPHPSYGKEKIPAYDMIKTSINIMRGCFGGCSFCSITEHEGRIIQS 404

Query: 205 RSLSQVVDEARKLIDN--GVCEIT--LLGQNVNAWR----------------------GK 238
           RS   +V E + + +   G   +   L G   N +                         
Sbjct: 405 RSQDSIVKEIKDIQEKVPGFTGVISDLGGPTANMYHLGCTSVKAESTCRRLSCIFPSICG 464

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL--DVLMPYLHLPVQ 296
            LD +     DL  +  +I G+ ++   +    D++    +   +L    +  YL +  +
Sbjct: 465 HLDTDHQATIDLYRAARDIPGIKKVLIASGVRYDLATEDPRYVKELATHHVGGYLKIAPE 524

Query: 297 SGSDRILKSMNRRH--TAYEYRQIIDRI-RSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
              +  L  M +    T  +++++ D+  +       +   FI   PG T++D       
Sbjct: 525 HTEEGPLNKMMKPGMGTYDKFKELFDKYSQEAGKKQYLIPYFISAHPGTTNEDMVNLALW 584

Query: 354 V--DKIGYAQAFSFKYSP 369
           +  +K    Q  +F  SP
Sbjct: 585 LKSEKFKLDQVQNFYPSP 602


>gi|188575169|ref|YP_001912098.1| lipoyl synthase [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188519621|gb|ACD57566.1| lipoic acid synthetase [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 327

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 46/236 (19%), Positives = 77/236 (32%), Gaps = 24/236 (10%)

Query: 161 ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS--QVVDEARKLI 218
           E  S  +       G   F+ + E C + C+FC V + R           +    A  + 
Sbjct: 72  EEASCPNIHECFSHGTATFMILGEVCTRRCSFCDVAHGRPK----PPDANEPASLAITVA 127

Query: 219 DNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD---MSD 275
           D G+  + +   +    R    DG    F D + ++       R+   T   R    M  
Sbjct: 128 DMGLKYVVVTSVD----RDDLRDGGAQHFVDCISAIRTSSPNTRIEILTPDFRGKGRMDR 183

Query: 276 CL-IKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSD 334
            L I A    DV    +        +     +           ++ R ++  P IA  S 
Sbjct: 184 ALDILALSPPDVFNHNIETVPDLYPN-----VRPGADYQWSLTLLQRFKAQHPSIATKSG 238

Query: 335 FIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN--MLEQVDENVKA 388
            ++G  GET +  +AT+  +           +Y     TP  +  M     E  KA
Sbjct: 239 IMLGL-GETMEQVQATLRDLRAHDVDMITIGQY--LQPTPHHHPVMRYWTPEEYKA 291


>gi|150016275|ref|YP_001308529.1| radical SAM domain-containing protein [Clostridium beijerinckii
           NCIMB 8052]
 gi|149902740|gb|ABR33573.1| Radical SAM domain protein [Clostridium beijerinckii NCIMB 8052]
          Length = 552

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 36/217 (16%), Positives = 80/217 (36%), Gaps = 19/217 (8%)

Query: 148 RVVDTDYSVEDKF-----ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           +V D  YS E +      E +   +   +    +  +     GC   C +C+   + G  
Sbjct: 141 KVNDIVYSNEKRPLMSMDEIVFPYEENEDLTNKIVYYEA-SRGCPFNCKYCLSSTSHG-V 198

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS-LSEIKGLV 261
               + +V+ +    I+  V  +  + +  N             F+  ++  L       
Sbjct: 199 RFLDIDRVLKDLMYFINKEVRLVKFVDRTFNCN---------SKFAMAIWDFLINQDTNT 249

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           +  +  S         I+             + VQ+ +D +L+++NR     + ++ +  
Sbjct: 250 QFHFEISADILKPQE-IELLSKAPKGRFRFEVGVQTTNDEVLRNINRFVNFSDIKEKVLE 308

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           I ++R +I    D I G PGE  + F+ + + + +I 
Sbjct: 309 IEALR-NIDQHLDLIAGLPGEDYESFKKSFNDMYEIK 344


>gi|307297504|ref|ZP_07577310.1| Radical SAM domain protein [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306916764|gb|EFN47146.1| Radical SAM domain protein [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 434

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/221 (14%), Positives = 70/221 (31%), Gaps = 21/221 (9%)

Query: 158 DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARK- 216
           D F+ L      Y   R   A L    GC   CT+C         + R   +     +  
Sbjct: 175 DWFDELDPDYSVYKSAR--YAVLISSLGCPFKCTYCASSLLWNSFVRRDPVKTARFVKHL 232

Query: 217 LIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT-SHPRDMSD 275
               G+ +I      +    G         F  L+     +    R       H R +  
Sbjct: 233 TASKGLSDIVFFDDAILVGSG---------FKRLMEEFERVGIKARFHLPNGVHARFVDR 283

Query: 276 CLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA---IS 332
                          + + +++    +  S   +    +    I+ + +         IS
Sbjct: 284 ETADLM--YMNNFKTIRIGLETSDPAMQNSTGGKVNLDDIFVAIENLSAA--GFTSREIS 339

Query: 333 SDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
           +  +V  PG++++D   ++ + +++  +     +++P  GT
Sbjct: 340 AYIMVNLPGQSEEDVLTSLRICEELRIS-PSLNEFTPIPGT 379


>gi|294627621|ref|ZP_06706203.1| lipoyl synthase [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
 gi|292597973|gb|EFF42128.1| lipoyl synthase [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
          Length = 337

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 44/235 (18%), Positives = 78/235 (33%), Gaps = 22/235 (9%)

Query: 161 ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS--QVVDEARKLI 218
           E  S  +       G   F+ + E C + C+FC V + R           +    A  + 
Sbjct: 82  EEASCPNIHECFSHGTATFMILGEVCTRRCSFCDVAHGRPK----PPDANEPASLAATVA 137

Query: 219 DNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD---MSD 275
           D G+  + +   +    R    DG    F D + ++       R+   T   R    M  
Sbjct: 138 DMGLKYVVVTSVD----RDDLRDGGAQHFVDCISAIRASSPNTRIEILTPDFRGKGRMDR 193

Query: 276 CLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDF 335
            L         +  +    +++  D    ++           ++ R ++  P IA  S  
Sbjct: 194 ALEILASSPPDVFNH---NIETVPDLY-PNVRPGADYQWSLTLLQRFKAQHPSIATKSGI 249

Query: 336 IVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN--MLEQVDENVKA 388
           ++G  GET D  +AT+  +           +Y     TP  +  M     E  KA
Sbjct: 250 MLGL-GETMDQVQATLRDLRAHDVDMITIGQY--LQPTPHHHPVMRYWTPEEYKA 301


>gi|328472025|gb|EGF42902.1| putative Fe-S oxidoreductase [Vibrio parahaemolyticus 10329]
          Length = 319

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 48/232 (20%), Positives = 80/232 (34%), Gaps = 23/232 (9%)

Query: 181 TIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL 240
           TI  G    CTFC V      E+   +  + ++ +            L            
Sbjct: 39  TIGRG---GCTFCNVASFADEEV--QIKSIHEQLKDRAGEIHRAKKYLA---YFQAYTST 90

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV--LMPYLHLPVQSG 298
             E     ++     +   +V L    + P  + D ++    D        +L L +Q+ 
Sbjct: 91  YAEVQVLKNMYEEALKAADIVGL-CVGTRPDCVPDSVLDLLSDYVNQGYEIWLELGLQTA 149

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           ++  LK +NR H    Y +I  R RS+   I + +  IVG P ET DD   T+  V  +G
Sbjct: 150 NNDTLKRINRGHDFECYAEITQRARSL--GIKVCTHLIVGLPKETRDDNIETLQKVLAVG 207

Query: 359 YAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACV 410
                        G+  +          KA R   L+    E+ V+     +
Sbjct: 208 TDGIKLHGLHIVEGSTMA----------KAWRAGRLEAPELEEYVAIASEMI 249


>gi|217968702|ref|YP_002353936.1| lipoyl synthase [Thauera sp. MZ1T]
 gi|217506029|gb|ACK53040.1| lipoic acid synthetase [Thauera sp. MZ1T]
          Length = 315

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 43/252 (17%), Positives = 85/252 (33%), Gaps = 21/252 (8%)

Query: 126 VVVGPQTYYRLPELL--------ERARFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGV 176
           + + P    + PE +        E  RF + +    D+ +    E  S  +      +G 
Sbjct: 19  IKIVPAERLKKPEWIRIKLGAGMEAERFNEIKATLRDHKLHTVCEEASCPNIHECFGKGT 78

Query: 177 TAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR 236
             F+ + + C + C FC V + R   ++    +  D A+ +    +  + +   +    R
Sbjct: 79  ATFMIMGDICTRRCPFCDVGHGRPEPLN--PDEPRDLAKTIAAMRLNYVVITSVD----R 132

Query: 237 GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAH-GDLDVLMPYLHLPV 295
               DG    F D +          R+       R   +  +         +M +    V
Sbjct: 133 DDLRDGGAQHFVDCIRETRAASPSTRIEVLVPDFRGRMEIALDIFDAAPPDVMNHNLETV 192

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
                R+ K            +++ + ++  PD+A  S  +VG  GETDD+    M  + 
Sbjct: 193 ----PRLYKQARPGSDYAYSLELLKQFKARHPDVATKSGLMVGL-GETDDEILEVMRDLR 247

Query: 356 KIGYAQAFSFKY 367
                     +Y
Sbjct: 248 AHDVEMLTIGQY 259


>gi|256752893|ref|ZP_05493729.1| Radical SAM domain protein [Thermoanaerobacter ethanolicus CCSD1]
 gi|256748223|gb|EEU61291.1| Radical SAM domain protein [Thermoanaerobacter ethanolicus CCSD1]
          Length = 562

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 51/284 (17%), Positives = 111/284 (39%), Gaps = 35/284 (12%)

Query: 92  NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVD 151
               +   D+ +V+AG  A +  + IL     V+ V   +    +   +E   + K  ++
Sbjct: 94  KCIKEIKHDIRIVMAGPHATSVAKNILETYEFVDYVALGEGENTIIPFIESVLYPKSTLE 153

Query: 152 TDYSVEDKFE----------------RLSIVDGGYNRKRGVTAFLTIQ--EGCDKFCTFC 193
           T   +  + +                 L   D G  +K     F++I+   GC   C FC
Sbjct: 154 TINGIAYRKDGVIYINWNKKNRVNGNDLPFFDIGQYQKIKTDQFISIEGGRGCPFNCVFC 213

Query: 194 VVPYTRGI-EISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFSDLL 251
                 G   + + +S+++ E      N GV + +++               K       
Sbjct: 214 STQRFWGNVFVVKPISKILREIEYYHKNYGVSKFSIIHDLFTT--------NKKYIEKFT 265

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDC-LIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
            S+ ++    +++++ S   D+ D  +++   +       +++ ++SGS +I K +++  
Sbjct: 266 KSIKQLP--YKIQWSCSSRLDVLDETMLREMIESG--CTDIYMGIESGSQKIQKLISKDL 321

Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
                  I+  I S   +  +S  FI G+P E ++D  AT+  +
Sbjct: 322 KLDILEPIVQFIISEGTNCILS--FIYGYPFEEEEDLEATLQTI 363


>gi|254388199|ref|ZP_05003435.1| hypothetical protein SSCG_00762 [Streptomyces clavuligerus ATCC
           27064]
 gi|294817326|ref|ZP_06775968.1| Fe-S oxidoreductase [Streptomyces clavuligerus ATCC 27064]
 gi|326446335|ref|ZP_08221069.1| Radical SAM domain protein [Streptomyces clavuligerus ATCC 27064]
 gi|197701922|gb|EDY47734.1| hypothetical protein SSCG_00762 [Streptomyces clavuligerus ATCC
           27064]
 gi|294322141|gb|EFG04276.1| Fe-S oxidoreductase [Streptomyces clavuligerus ATCC 27064]
          Length = 601

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 70/452 (15%), Positives = 122/452 (26%), Gaps = 82/452 (18%)

Query: 53  YERVNSMD---DADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRI-KEGGDLLVVVAGC 108
           Y  V S     +AD++ +    +           L  +  +      +  G   VVV G 
Sbjct: 91  YRSVESPAPVHEADIVGV---SVTNAGDMHSVFRLLDLAVIPRRTTDRVPGRHPVVVGGQ 147

Query: 109 VAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVED---------- 158
              A  E +      ++VVV  +    LP L+      +   D   S+ +          
Sbjct: 148 GGLANPEVLA---DYLDVVVLGEAERSLPRLIRTVHAHQCSPDPGISLYELLAKIPGLYV 204

Query: 159 ---------------------------------KFERLSIVDGGYNRKRGVTAFLTIQEG 185
                                              + L      Y    G  A +    G
Sbjct: 205 PSLYECDLVAGGGVSAVRPKAVTVPAAVRAQWLALDDLHNAHFVYPITDGTAAGMIPLLG 264

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C   C FC             L  ++    ++ + GV  I +       +R +    E+ 
Sbjct: 265 CRHACFFCT--LRTPPFRQAPLEVLLRYIDRVEELGVPLIIISAPTFTQYRHRTRLLERI 322

Query: 246 TFSDLLY-----SLSEIKGLVRLRYTTSHPRDMSDCL-----IKAHGDLDVLMPYLHLPV 295
                        +S I G VR    TS      + L     +     L      + +  
Sbjct: 323 RAYRDRARARGIRVSVIIGSVRADEMTSDYLRDVNELGDFGHLFTELSLTQARGIVTIAP 382

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI-AISSDFIVGFPGETDDDFRATMDLV 354
           +     ++    +        + ID+ R     I  +   FI+G PGE  +D  A  D  
Sbjct: 383 EFADAELVSLYGKTMPPERVDRAIDQCREASDVIDTVMLYFIIGAPGERREDRLAIADRA 442

Query: 355 DKI--GYAQAFS------FKYSPRLGTPGSNMLEQVDE------NVKAERLLCLQKKLRE 400
             I     +  +       ++ P  GT    +                +RL  L     E
Sbjct: 443 RDIHARLDRPDASVIIKLHQFMPEPGTLTQRLPMTDPGLIDGYVEEITDRLRRL--VGEE 500

Query: 401 QQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS 432
                     G+   + +E       + VG +
Sbjct: 501 TFAEHYRVLYGEANRLHLEAVCLRGDRRVGHA 532


>gi|189462150|ref|ZP_03010935.1| hypothetical protein BACCOP_02832 [Bacteroides coprocola DSM 17136]
 gi|189431123|gb|EDV00108.1| hypothetical protein BACCOP_02832 [Bacteroides coprocola DSM 17136]
          Length = 604

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 39/273 (14%), Positives = 89/273 (32%), Gaps = 48/273 (17%)

Query: 151 DTDYSVEDKFERLSIVDGGYNR---KRGVTAFLTIQEGCDKFCTFCVVPYTRGIE-ISRS 206
           + D S +  + RL        R      +   + I  GC   C FC +   +G   +SRS
Sbjct: 274 ELDMSFDLPYTRLPHPKYKGKRIPAFDMIKFSVNIHRGCFGGCAFCTISAHQGKFIVSRS 333

Query: 207 LSQVVDEARKLIDN----------GVCEITLLGQN---------------VNAWRGKGLD 241
              ++ E + + +           G     + G +               ++      L+
Sbjct: 334 KESILKEVKAITEMPDFKGYLSDLGGPSANMYGMHGRDERMCRRCKRPSCIHPKVCPNLN 393

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM------SDCLIKAHGDL------DVLMP 289
            +     D+ +++  +  + +    +    D+         + K+  +         +  
Sbjct: 394 TDHRPLLDIYHAVDALPKIKKSFIGSGVRYDLLLHESKDPEVNKSTAEYTRELIARHVSG 453

Query: 290 YLHLPVQSGSDRILKSMNRR-----HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETD 344
            L +  +  SDR+L  M +      +        I++  ++R  I     FI   PG T+
Sbjct: 454 RLKVAPEHTSDRVLYIMRKPPFEQFYRFKRIFDRINKELNLRQQIIPY--FISSHPGCTE 511

Query: 345 DDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
           +D      +  ++ +       ++P   T  + 
Sbjct: 512 EDMAELAVITKRLDFHLEQVQDFTPTPMTVATE 544


>gi|149917205|ref|ZP_01905705.1| radical SAM domain protein [Plesiocystis pacifica SIR-1]
 gi|149822121|gb|EDM81514.1| radical SAM domain protein [Plesiocystis pacifica SIR-1]
          Length = 584

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/195 (16%), Positives = 62/195 (31%), Gaps = 13/195 (6%)

Query: 179 FLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK 238
           ++    GC   C FCV           S+ +V  E R  +      I +     N     
Sbjct: 197 YVETDRGCPYSCAFCVESTAPNKVAEFSMDRVEAELRWALARDFEHIEMCSAIFNR---- 252

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
               +       +  +  +     L ++ +      +    A      L       + S 
Sbjct: 253 ----DTAWMEQFIELVERLDPDKTLSFSAALYSTYINERQAALLARLNL-RSALFGLNSV 307

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           +    KS+ R      ++Q ++ ++ V   +      I+G PG+T   F  T+D V  + 
Sbjct: 308 NSETFKSVRRVVRLERFKQRMELLKEV---LRPEVSLIMGLPGDTPAGFAKTLDYVATLD 364

Query: 359 YAQAFSFKYSPRLGT 373
                 F++     T
Sbjct: 365 V-NVMVFRFMVLPAT 378


>gi|307299285|ref|ZP_07579086.1| Radical SAM domain protein [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306915081|gb|EFN45467.1| Radical SAM domain protein [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 504

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 45/323 (13%), Positives = 111/323 (34%), Gaps = 31/323 (9%)

Query: 57  NSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEE 116
             ++ +D +++++  I+    +   + + + ++L          +  V  G +     EE
Sbjct: 61  EDIEKSDYVMISSMDIQ---FDSTKNVIQKCKDL---------GVKTVAGGPLFTTRPEE 108

Query: 117 ILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGV 176
                 + ++V+G       P LL+  +   + +       D            + ++  
Sbjct: 109 FS---EVDHLVLGEAEKTLEPFLLDLEKGQAKHIYKSDDFPDIESSPIPDWSLLDMRKYS 165

Query: 177 TAFLTIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW 235
           +  +    GC   C FC +    G    ++S  ++V E   L   G      L  +    
Sbjct: 166 SMNIQYSRGCPYNCEFCDIVLLNGHIPRTKSAEKLVAEMEALYKVGWRGGVFLVDD---- 221

Query: 236 RGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM----SDCLIKAHGDLDVLMPYL 291
               +  +     ++L +++E        +  +    +     D L++   D       +
Sbjct: 222 --NFIGNKVKLKREILPAIAEWMKKRNYPFVLNTEASIDLSDDDELMRLMVDAS--FGTV 277

Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP-DIAISSDFIVGFPGETDDDFRAT 350
            + +++  +  L    +       R ++  +R ++   + +   FIVGF  +    F   
Sbjct: 278 FVGIETTEEESLVECGKFQNR--NRDLLSSVRKMQEFGLQVQGGFIVGFDHDKPSVFSNM 335

Query: 351 MDLVDKIGYAQAFSFKYSPRLGT 373
           +D + K G   A     +   GT
Sbjct: 336 IDFIQKSGIVTAMVGVLTAPTGT 358


>gi|284929287|ref|YP_003421809.1| Fe-S oxidoreductase [cyanobacterium UCYN-A]
 gi|284809731|gb|ADB95428.1| Fe-S oxidoreductase [cyanobacterium UCYN-A]
          Length = 523

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 44/296 (14%), Positives = 94/296 (31%), Gaps = 28/296 (9%)

Query: 79  KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVV----------- 127
           +++  +  I+       K    + V+V G  A    E++    P   +V           
Sbjct: 119 ELWRNVNLIKLGFKQARKYHSKVRVIVGGGAASVFYEQVQYYLPRGTIVSVGEGEGLLKK 178

Query: 128 ------VGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYN---RKRGVTA 178
                    +  Y + E   R R      +  Y     ++ +  +   +N    +     
Sbjct: 179 LLSGQDFSNERCYVIGENQPRERLIHEFPEPLYKTSCDYDYIETIWNEFNYYFEESDFYI 238

Query: 179 FLTIQEGCDKFCTFCVVPYTRGIEISR-SLSQVVDEARKLIDNGVCEITLLGQNVNAWRG 237
            +  + GC   C +CV     G ++    +++VV E ++L   G+             R 
Sbjct: 239 GVQTKRGCPHNCCYCVYTVVEGKQVRINPVNEVVKEMQQLYKRGIRNFWFTDAQFIPARK 298

Query: 238 KGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQS 297
              D E     +LL  + +               +++  L        +   Y  + + S
Sbjct: 299 FIKDAE-----ELLEEIIKSGMTDINWAAYIRADNLTPKLCDLMVKTGI--SYFEIGITS 351

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
           GS  +++ M   +      Q    ++    +  +S ++      ET D  R T+  
Sbjct: 352 GSQELVRKMRMGYNLKTVLQNCRFLKDAGFNSLVSVNYSFNVIDETFDTIRQTIAY 407


>gi|119509773|ref|ZP_01628918.1| hypothetical protein N9414_00450 [Nodularia spumigena CCY9414]
 gi|119465639|gb|EAW46531.1| hypothetical protein N9414_00450 [Nodularia spumigena CCY9414]
          Length = 532

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 45/319 (14%), Positives = 100/319 (31%), Gaps = 32/319 (10%)

Query: 62  ADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRS 121
           AD+++L+   ++++        LG+I+  K          LV V G    +   E+    
Sbjct: 66  ADVVILSAMIVQKE------DLLGQIQEAKRRGK------LVAVGGPYPTSVPHEVENV- 112

Query: 122 PIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGV-TAFL 180
              + ++  +    LP  +   + G+       + +       I               +
Sbjct: 113 -GADFLILDEGEITLPMFIAAIQRGETSGVFRATEKPDVTGTPIPRFDLLELNAYDMMSV 171

Query: 181 TIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
               GC   C FC +    G +  +++ +Q++ E   L + G      +  +        
Sbjct: 172 QFSRGCPFQCEFCDIIVLYGRKPRTKTPAQLLAELDCLYELGWRRGVFMVDD-------N 224

Query: 240 LDGEKCTFSDLLYSL----SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPV 295
             G K     LL  L     E +   R     S        +++   +       + L +
Sbjct: 225 FIGNKRNVKLLLKELKVWMEEHQYPFRFDTEASVDLAQDPEMLELMVESG--FSAVFLGI 282

Query: 296 QSGSDRILKSMNRR-HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           ++  +  L+   +  +T       +  I  ++  +   + FI+GF GE        +   
Sbjct: 283 ETPDEDSLQLTKKFQNTRSSLADAVQTI--IKAGLRPMAGFIIGFDGEKAGAGDRIVRFA 340

Query: 355 DKIGYAQAFSFKYSPRLGT 373
           ++                T
Sbjct: 341 EQAAIPSTTFAMLQALPNT 359


>gi|332286515|ref|YP_004418426.1| lipoyl synthase [Pusillimonas sp. T7-7]
 gi|330430468|gb|AEC21802.1| lipoyl synthase [Pusillimonas sp. T7-7]
          Length = 330

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 42/233 (18%), Positives = 86/233 (36%), Gaps = 15/233 (6%)

Query: 140 LERARFGKRVVDT-----DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCV 194
           ++ A  G R  D      ++++    E  S  + G    +G   F+ + + C + C FC 
Sbjct: 52  VKAAAPGSRFYDIKKILREHNLHTVCEEASCPNIGECFGKGTATFMIMGDKCTRRCPFCD 111

Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL 254
           V + R   +   +++ V+ AR +    +  + +   +    R    DG    F + +  +
Sbjct: 112 VGHGRPDPL--DVNEPVNLARSIAAMKLSYVVITSVD----RDDLRDGGAGHFVECIRKV 165

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
            E+    R+        D    L +A G L+   P +         R+ K          
Sbjct: 166 RELSPTTRIEVLVP---DFRGRLDRALGILNEGPPDVMNHNLETVPRLYKQARPGSDYQH 222

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
             +++   + + PD+   S  ++G  GETD++    M  +           +Y
Sbjct: 223 SLKLLSEFKILHPDVPTKSGLMLGL-GETDEEILEVMRDMRAHNVDMLTIGQY 274


>gi|304437076|ref|ZP_07397039.1| oxygen-independent coproporphyrinogen III oxidase 2 [Selenomonas
           sp. oral taxon 149 str. 67H29BP]
 gi|304370027|gb|EFM23689.1| oxygen-independent coproporphyrinogen III oxidase 2 [Selenomonas
           sp. oral taxon 149 str. 67H29BP]
          Length = 501

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 47/218 (21%), Positives = 80/218 (36%), Gaps = 25/218 (11%)

Query: 155 SVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP--YTRGIEISRSLSQVVD 212
             E    +L  +     R  G+   +     C   C +C  P     G    R+   V+ 
Sbjct: 154 MTEVAVRQLPFLAHEDARTVGIYVGIPF---CLSRCLYCSFPSHLLPGENTLRAFMDVLV 210

Query: 213 EARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
                    V  + L    V      G  G   +  D+ +  +E+  +V   +  S  R+
Sbjct: 211 RDLAAAAEDVRTLGLT---VGCIYIGG--GTPTSLPDVFF--AEMLKMVYNAFYGSSVRE 263

Query: 273 MSDCL----------IKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
            +             I A       +  + +  QS  +R L+ + R HT  +  +++  I
Sbjct: 264 FTVEAGRPDSMSAAKITAMKAYR--VTRVSVNPQSMQERTLERIGRHHTPSDIVRMVQDI 321

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
           R+   D+ I+ D I+G PGET +D RATM  V  +   
Sbjct: 322 RASM-DVHINMDVILGLPGETAEDVRATMAAVTALRPD 358


>gi|70732750|ref|YP_262513.1| lipoyl synthase [Pseudomonas fluorescens Pf-5]
 gi|68347049|gb|AAY94655.1| lipoic acid synthetase [Pseudomonas fluorescens Pf-5]
          Length = 340

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/214 (16%), Positives = 76/214 (35%), Gaps = 10/214 (4%)

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           + +    E  S  + G     G   F+ + + C + C FC V + R   +   + + ++ 
Sbjct: 78  HKLHSVCEEASCPNLGECFSGGTATFMIMGDICTRRCPFCDVGHGRPKPL--DVDEPMNL 135

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
           A  + D  +  + +   +    R    DG    F+D +  + ++   V+L       R  
Sbjct: 136 AVAIADLRLKYVVITSVD----RDDLRDGGAQHFADCIREIRKLSPNVQLETLVPDYRGR 191

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
            D  ++         P +         R+ K+            ++ + + + P +   S
Sbjct: 192 MDVALEITAATP---PDVFNHNLETVPRLYKAARPGSDYQWSLTLLQKFKQLVPHVPTKS 248

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
             ++G  GETDD+    M  + +         +Y
Sbjct: 249 GLMLGL-GETDDEVIEVMKRMREHDIDMLTLGQY 281


>gi|328955423|ref|YP_004372756.1| oxygen-independent coproporphyrinogen III oxidase [Coriobacterium
           glomerans PW2]
 gi|328455747|gb|AEB06941.1| oxygen-independent coproporphyrinogen III oxidase [Coriobacterium
           glomerans PW2]
          Length = 396

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 41/194 (21%), Positives = 63/194 (32%), Gaps = 13/194 (6%)

Query: 186 CDKFCTFCVV-PYTRGIEISRS-LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
           C   C +C       G   S +     +D     ID       L   ++      G  G 
Sbjct: 13  CRSRCPYCDFFSCALGARGSDAQAGAYLDMVCARIDELGSIGVL--DHLRCGYIGG--GT 68

Query: 244 KCTF-SDLLYSLSEIKGLVRLRYTTSHPRD--MSDCLIKAHGDLDVLMPYLHLPVQSGSD 300
              F   L  +++ I+        T        +     A          + L VQS  D
Sbjct: 69  PSLFGPALAGAVARIRRWCEPVEITCEANPESCTASFCSAIARAG--ATRISLGVQSLID 126

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
             L  M R HT       I+  R+    +++S D + G PG+T D +  T+  V +    
Sbjct: 127 EELAVMGRIHTRERALCAIEIARAT--GMSVSCDLMCGLPGQTADSWERTLLDVIEAAPD 184

Query: 361 QAFSFKYSPRLGTP 374
               +  S   GTP
Sbjct: 185 HISVYPLSIEPGTP 198


>gi|307718776|ref|YP_003874308.1| hypothetical protein STHERM_c10900 [Spirochaeta thermophila DSM
           6192]
 gi|306532501|gb|ADN02035.1| hypothetical protein STHERM_c10900 [Spirochaeta thermophila DSM
           6192]
          Length = 848

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 48/285 (16%), Positives = 97/285 (34%), Gaps = 32/285 (11%)

Query: 127 VVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGC 186
           V+G   +  +P      +  KR +   +     +    + +    +     A + I  GC
Sbjct: 197 VLGEDPHVWMPG----KQKAKRAIWMGFGEPRIYSYRPVPNIPAVQDH---AVVEIMRGC 249

Query: 187 DKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKC 245
            + C FC        +  +  S + +E R L ++ G  EITL   +          G+  
Sbjct: 250 PQGCRFCHAGIFYRPQRVKPPSAIHEEVRHLHEDLGYREITLASLSS---------GDYP 300

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRD--MSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
              DL+ SL+       L +     +    +  L++  G        L   V++      
Sbjct: 301 GIFDLVRSLNREFAGRHLSFALPSLKVSTFALELLEEIGRGKK--SGLTFAVETPYPEGQ 358

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFR--------ATMDLVD 355
           K +N+     +   I+ R +     +A    F++G P   +D+           T+    
Sbjct: 359 KGLNKEVELEKVISILQRAKEEGWRLAKF-YFMIGLPHSIEDEREPERIVEYIETISRAT 417

Query: 356 KIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLRE 400
           +I         + P+  TP      Q+       R+  ++ +L+ 
Sbjct: 418 RISI-HVNIGTFVPKPHTP-FQWAPQLSYEEAKRRIFQVRDRLKR 460


>gi|225569892|ref|ZP_03778917.1| hypothetical protein CLOHYLEM_05986 [Clostridium hylemonae DSM
           15053]
 gi|225161362|gb|EEG73981.1| hypothetical protein CLOHYLEM_05986 [Clostridium hylemonae DSM
           15053]
          Length = 579

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/189 (17%), Positives = 66/189 (34%), Gaps = 10/189 (5%)

Query: 174 RGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVN 233
           R    +     GC   C++C+          R  + V  E +  ID  V ++  + +  N
Sbjct: 187 RHKIVYYESSRGCPFSCSYCL-SSVDKRLRFRDTALVKQELQFFIDARVPQVKFVDRTFN 245

Query: 234 AWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHL 293
                 ++            +SE    +   +       +++  +   G +   +  L +
Sbjct: 246 CNHRHAMEIWTY--------ISEHDNGITNFHFEIAADLLNEEELDLFGKMRPGLIQLEI 297

Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
            +QS +   +K + R     +    + RIR    +I    D I G P E  + F+ + D 
Sbjct: 298 GIQSTNPCTVKEIRRTMDFEKAAHTVRRIRDN-GNIHQHLDLIAGLPYEDMESFKRSFDD 356

Query: 354 VDKIGYAQA 362
           V  +   Q 
Sbjct: 357 VYALRPDQL 365


>gi|220904298|ref|YP_002479610.1| Radical SAM domain-containing protein [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
 gi|219868597|gb|ACL48932.1| Radical SAM domain protein [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 922

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 51/275 (18%), Positives = 95/275 (34%), Gaps = 27/275 (9%)

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           R  +R+V    +      ++  V   +NR       L I  GC + C FC          
Sbjct: 225 RPVRRIVADINNTPYPARQVVPVGAVHNRLS-----LEIARGCTRGCRFCHAGMVYRPVR 279

Query: 204 SRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            RSL+ +     + +   G  EI+ L  +            K     +L   +  +  + 
Sbjct: 280 ERSLATIQTLLDQCLSETGFDEISFLSLSTG-----DFSALKTLCFGVLDRCAREQ--IG 332

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           L   +     + D +I+   DL        L  ++GS R+   +N+  T  E      ++
Sbjct: 333 LSLPSLRVGSIDDEIIERMADLRR--TGCTLAPEAGSQRLRDVINKGITEEELLLHAQKL 390

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG----------YAQAFSFKYSPRLG 372
                   +   F++G P ETDDD  A  +   K+              A    + P+  
Sbjct: 391 LEHGWR-QVKLYFMIGLPTETDDDLSAITETCLKVRDAAGRGGPRLQVTAALSPFVPKPF 449

Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFND 407
           TP    + Q+ +     R+  ++ + + Q+     
Sbjct: 450 TP-FQWVPQISQEEIQRRVHLVRHQFKGQKFLKLR 483


>gi|120434442|ref|YP_860148.1| oxygen-independent coproporphyrinogen III oxidase [Gramella
           forsetii KT0803]
 gi|117576592|emb|CAL65061.1| oxygen-independent coproporphyrinogen III oxidase [Gramella
           forsetii KT0803]
          Length = 374

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 46/237 (19%), Positives = 82/237 (34%), Gaps = 30/237 (12%)

Query: 186 CDKFCTFCVVPY-TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK 244
           C + C +C   + T   + S  +  +  E     D        +GQ +         G  
Sbjct: 11  CKQACHYCDFHFSTSTKKKSELVEMLCKELELRKDE-------IGQTIQTVYF----GGG 59

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTS---------HPRDMSDCLIKAHGDLDVLMPYLHLPV 295
                    L  I   +   Y  S         +P D+S+ +IK        +  L + V
Sbjct: 60  TPSLLNSEELDSIFKTIFEYYEVSKDAEITLEANPDDLSEEVIKVLDKSP--VNRLSIGV 117

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
           QS     LK MNR H A E    +   R    +I+I  D I G PG++++ ++  + +  
Sbjct: 118 QSFFGADLKLMNRAHNAQEALASLQLARRYFDNISI--DLIYGIPGQSNEQWKENLKIAL 175

Query: 356 KIGYAQAFSFKYSPRLGTPGSNMLEQ-----VDENVKAERLLCLQKKLREQQVSFND 407
           ++      S+  +    T     +E+     V++    E+   L   L        +
Sbjct: 176 ELDIPHISSYALTVEPKTALEKFIEKGKVKPVNDEQYREQFDILVNALTSNGFEHYE 232


>gi|53721066|ref|YP_110051.1| hypothetical protein BPSS0027 [Burkholderia pseudomallei K96243]
 gi|52211480|emb|CAH37470.1| hypothetical protein BPSS0027 [Burkholderia pseudomallei K96243]
          Length = 647

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 56/307 (18%), Positives = 102/307 (33%), Gaps = 44/307 (14%)

Query: 95  IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR---------- 144
            +   DL V++ G  A     +IL R P  +++V  +    LP +L+             
Sbjct: 98  KRREPDLPVLLGGPHATMLHRQILERFPQFDIIVRYEADEILPAVLDCLEQRTFDVIPGL 157

Query: 145 ------FGKRVVDTDYSVE-DKFERLSIVDG-GYNRKRGVTAFLTIQ--EGCDKFCTFCV 194
                  G  +  TD   + ++ +RL I     Y       + L I+   GC   CTFC 
Sbjct: 158 SWRATGHGAPLRFTDGKPKVEELDRLPIASYDHYPVDDLGLSMLRIEAGRGCPFACTFCS 217

Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL 254
                  + S  L        +L                +      D        ++   
Sbjct: 218 TAGFF--QRSFRLKSAERLVHELDILHRRYRV-------SDFKLDHDMFTVNRHKVMAFC 268

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
             + G       ++    + + L++   D       L+  V++GS+R+     +R     
Sbjct: 269 EAVAGRGYRWRASARIDCVDEALLRKMADAG--CVNLYFGVETGSERMQTICRKR----L 322

Query: 315 YRQIIDRIRSVRPDIAISSD--FIVGFPGETDDDFRATMDLVDKIG-----YAQAFSFKY 367
             ++++ I +      I +   FI G+P E   D   T+D++ +         Q      
Sbjct: 323 DLRLVEPILAAADSFGIETTASFITGYPQECGQDQDDTLDMIGRCARRPSCLTQLHMLA- 381

Query: 368 SPRLGTP 374
            P  GTP
Sbjct: 382 -PEPGTP 387


>gi|30577689|emb|CAD18980.1| putative methyltransferase [Streptomyces cattleya]
          Length = 474

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/235 (15%), Positives = 73/235 (31%), Gaps = 16/235 (6%)

Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           LER R  K     D  + D+          ++      A +    GC   C FC +    
Sbjct: 152 LERDRRPKPSALDDLPMPDRTRLAHHRGRYFHSIYRPVALIRFTAGCPYTCKFCSLWRMT 211

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
                           K ID  + EI  +  +           +     +L  ++ +   
Sbjct: 212 DR----------RYLVKDIDRVLAEIADIDGDNLYVVDDEAFIQPVRMLELADAIDKAG- 260

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVL-MPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
             R ++      D +            + +  + +  +S +D  L    +     + R+ 
Sbjct: 261 -FRKKFHMYVRTDTALRRPDVIARWAEIGLDSVLVGAESMTDEELTGYRKGTDPGQTRRA 319

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
           +D        + + ++FIV  P  ++ DF      VD++          +P  GT
Sbjct: 320 LDLFHGN--GVKVRANFIV-QPDWSEADFARLGRTVDELQVDMPSFSVLTPLPGT 371


>gi|90425950|ref|YP_534320.1| radical SAM family protein [Rhodopseudomonas palustris BisB18]
 gi|90107964|gb|ABD90001.1| Radical SAM [Rhodopseudomonas palustris BisB18]
          Length = 554

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 44/286 (15%), Positives = 91/286 (31%), Gaps = 45/286 (15%)

Query: 62  ADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRS 121
           AD+I ++     +    ++   L R         +    + +VV G  A A  +  +   
Sbjct: 92  ADVIAISCMSPLKALDTELTIKLAR---------EVNPAVKIVVGGNHATAWPDRWIDA- 141

Query: 122 PIVNVVV------------------------GPQTYYRLPELLERARFGKRVVDTDYSVE 157
             V+ VV                         P   +R  ++  R+       D + +  
Sbjct: 142 -GVDFVVTGEGEAAFRALIEALIVGAAAFDAVPNLCWRDGDVCRRSPLKAEPTDLEAAPM 200

Query: 158 DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV-PYTRGIEISRSLSQVVDEARK 216
             +    +   G     G  A + I  GC   C FC +  +    +  +S+ +V+ E + 
Sbjct: 201 PDWSGFDLRPYGLGMSNGFGAAVEISRGCPHRCDFCNINTFWNYKQRYKSVDKVIAELQA 260

Query: 217 LIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDC 276
           L   GV E      N           E+ T + L   ++    L    +        +  
Sbjct: 261 LKAAGVGEFIFTDDNFGGD-------ERKTVALLKEMIAHRLDLRFGCFLRGDTVHRNPD 313

Query: 277 LIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
             +        M +  + +++     LKS  +   A++   + ++I
Sbjct: 314 FARL--AHQAGMRFCMMGIETLDAEWLKSHRKGVRAHDAIAMYNKI 357


>gi|331005781|ref|ZP_08329140.1| Lipoate synthase [gamma proteobacterium IMCC1989]
 gi|330420418|gb|EGG94725.1| Lipoate synthase [gamma proteobacterium IMCC1989]
          Length = 362

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/248 (15%), Positives = 79/248 (31%), Gaps = 18/248 (7%)

Query: 127 VVGPQTYYRLPELLERARFGKRVVDTDYSVEDK------FERLSIVDGGYNRKRGVTAFL 180
           V+      R PE +         V+    V  K       E  +  + G     G   F+
Sbjct: 70  VIATDEMLRKPEWIRVKMHSSPEVERIKKVLRKNNLSSVCEEAACPNLGECFSGGTATFM 129

Query: 181 TIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL 240
            + + C + C FC V    G        + +  A  + +  +  + +   +    R    
Sbjct: 130 IMGDICTRRCPFCDV--GHGKPNDLDAQEPIRLAEAIAEMRLKYVVVTSVD----RDDLR 183

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL-DVLMPYLHLPVQSGS 299
           DG    F+D +    E    + +   T   R   +  +    +    +  +    V    
Sbjct: 184 DGGAQHFADCIREARERSPSLEVEILTPDFRGRMEIALDILAEEAPDVFNHNLETV---- 239

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
            R+ +             ++ + ++ RPD+   S  +VG  GET ++    +  + +   
Sbjct: 240 PRLYREARPGANYKWSLDLLKQYKARRPDVMTKSGLMVGL-GETKEEIFEVLKDMREYNI 298

Query: 360 AQAFSFKY 367
                 +Y
Sbjct: 299 DMLTIGQY 306


>gi|304404975|ref|ZP_07386635.1| Radical SAM domain protein [Paenibacillus curdlanolyticus YK9]
 gi|304345854|gb|EFM11688.1| Radical SAM domain protein [Paenibacillus curdlanolyticus YK9]
          Length = 615

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 54/301 (17%), Positives = 104/301 (34%), Gaps = 33/301 (10%)

Query: 95  IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVV---GPQTYYRLPELLERARFGKRVVD 151
            K   ++ +++ G     + E  + R P V+ +V   G +T++ + + LE  R    V  
Sbjct: 91  RKIMPEVKILLGGPEVSYDTEFWMERIPQVDFIVVGEGEETFHHMLQELETTRKFHLVFG 150

Query: 152 TDYSVEDKFE------------RLSIVDGGYNRKRGVTA------FLTIQEGCDKFCTFC 193
             Y  E + +             L+ +   Y  +  +        +     GC   C FC
Sbjct: 151 LAYRKEKEGKSQIVVNPGRPKLDLATLPSPYRFEEDIPTLANRVVYFETSRGCPFSCQFC 210

Query: 194 VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS 253
           +     G      +++   +   LID G   I  + +  N  R               + 
Sbjct: 211 LSSIEVG-VRYFDINRTKADINYLIDQGAKLIKFVDRTFNIKRD-------YALEMFQFL 262

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL-DVLMPYLHLPVQSGSDRILKSMNRRHTA 312
           +   +G V     T+    M   ++    +     +    + VQS +D   +++ RR   
Sbjct: 263 IENHRGCVFQFEITADI--MRPEVLDYLAEHAPPGVFRFEIGVQSTNDITNEAVKRRQNF 320

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
            +  + ++++R     I    D I G P E  D FR T + V  +   +          G
Sbjct: 321 TKLTRTVNKVRDS-GKIDQHLDLIAGLPHEDYDTFRKTFNDVFALRPEELQLGFLKMLRG 379

Query: 373 T 373
           T
Sbjct: 380 T 380


>gi|325479804|gb|EGC82891.1| coproporphyrinogen dehydrogenase HemZ [Anaerococcus prevotii
           ACS-065-V-Col13]
          Length = 431

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/197 (17%), Positives = 69/197 (35%), Gaps = 15/197 (7%)

Query: 173 KRGVTAFLTIQEGCDKFCTFCVVPYTRGIE--ISRSLSQVVDEARKLIDNGVCEITLLGQ 230
            R  + ++ I   C   C +C  P   G     S+ +  ++ E   +      +   +G 
Sbjct: 122 PRDFSLYINIPF-CPSRCHYCSYPTIVGPREDRSKYIDSLIYEIENISLPRKLDAIYIGG 180

Query: 231 NVNAWRGKGLDGEKCTFSDLLYSLSEI-KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMP 289
              ++             DL   L  I +      +T    R+ +    K     +  + 
Sbjct: 181 GTPSYIKTD---------DLRRLLLAINEKFSYKEFTFEAGREDTLDFDKLKLLRENGVG 231

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
            + L  QS ++ I+K   R +    +  I    R +     I++DFI+G  GE  DDF+ 
Sbjct: 232 RISLNPQSFNEDIVKRAGRAYDFDHFLDIFKMARDL--GFIINTDFIIGLMGEKADDFKK 289

Query: 350 TMDLVDKIGYAQAFSFK 366
              +++ +         
Sbjct: 290 NFFILEDLMPDNITFHT 306


>gi|269103461|ref|ZP_06156158.1| hypothetical protein VDA_002887 [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268163359|gb|EEZ41855.1| hypothetical protein VDA_002887 [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 309

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 39/195 (20%), Positives = 69/195 (35%), Gaps = 15/195 (7%)

Query: 181 TIQEGCDKFCTFCVV-PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
           TI  G    CTFC V  +         + + + +    ++     +              
Sbjct: 39  TIGRG---GCTFCNVASFADEKAQFLPIHEQLTQRAGEVNRAKKYLAYF------QAYTS 89

Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYT--TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQS 297
              E  T   +     +   +V L          D    L+  + +    + +L L +Q+
Sbjct: 90  TYAEVQTLKKMYEEALQAADIVGLCVGTRPDCVPDAVLDLLAGYREQGYEI-WLELGLQT 148

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
            +D+ LK +NR H    Y +I  R R++   I + +  IVG PG+T  D   T+  V ++
Sbjct: 149 ANDKTLKRINRGHDFACYAEITRRARAL--GIKVCTHLIVGLPGDTKQDNLETIKRVVEV 206

Query: 358 GYAQAFSFKYSPRLG 372
           G             G
Sbjct: 207 GVDGIKLHPLHLVEG 221


>gi|317401420|gb|EFV82053.1| lipoyl synthase [Achromobacter xylosoxidans C54]
          Length = 327

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 44/252 (17%), Positives = 90/252 (35%), Gaps = 23/252 (9%)

Query: 126 VVVGPQTYYRLPELL--ERARFGKRVVDT-----DYSVEDKFERLSIVDGGYNRKRGVTA 178
           + + P    + PE +  + A+ G R  D      ++++    E  S  + G    +G   
Sbjct: 32  IKIVPAERLKKPEWIRVKAAQPGSRFYDIKRILREHNLHTVCEEASCPNIGECFGKGTAT 91

Query: 179 FLTIQEGCDKFCTFCVVPYTRGIEISRSLS--QVVDEARKLIDNGVCEITLLGQNVNAWR 236
           F+ + + C + C FC V + R       L   +  + AR +    +  + +   +    R
Sbjct: 92  FMIMGDKCTRRCPFCDVGHGRPD----PLDTKEPENLARTIAAMKLSYVVITSVD----R 143

Query: 237 GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD-MSDCLIKAHGDLDVLMPYLHLPV 295
               DG    F D +  + E+    R+       R  +   L   +     +M +    V
Sbjct: 144 DDLRDGGAGHFVDCITHIRELSPSTRIEVLVPDFRGRLDRALTILNAGPPDVMNHNLETV 203

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
                R+ K            +++   + + PD+   S  ++G  GETD++    M  + 
Sbjct: 204 ----PRLYKQARPGSDYMHSLKLLAEFKKLHPDVPTKSGLMLGL-GETDEEILQVMRDMR 258

Query: 356 KIGYAQAFSFKY 367
           +         +Y
Sbjct: 259 EHNVDMLTIGQY 270


>gi|260589628|ref|ZP_05855541.1| oxygen-independent coproporphyrinogen III oxidase 2 [Blautia
           hansenii DSM 20583]
 gi|331083060|ref|ZP_08332177.1| hypothetical protein HMPREF0992_01101 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|260539868|gb|EEX20437.1| oxygen-independent coproporphyrinogen III oxidase 2 [Blautia
           hansenii DSM 20583]
 gi|330405062|gb|EGG84599.1| hypothetical protein HMPREF0992_01101 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 483

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/204 (17%), Positives = 72/204 (35%), Gaps = 22/204 (10%)

Query: 173 KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNV 232
           + G + ++ I   C   C +C          S  L +  D+    +D  + E+  + + +
Sbjct: 162 ENGYSLYVGIPF-CPSICLYCSFS-------SSPLERWRDKVDSYLDALLKELDFIAETM 213

Query: 233 NAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD----------MSDCLIKAH 281
                  +  G     +     L  + G ++ R+     ++          ++   ++A 
Sbjct: 214 KDKTLDTIYIGGGTPTTLEPQQLHRLLGHIQKRFPMEQVKEYTIEAGRPDSITKEKLQAI 273

Query: 282 GDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPG 341
            +    +  + +  Q+ +   LK + R HT  + R      R    D  I+ D IVG PG
Sbjct: 274 REYP--VTRISVNPQTMNAETLKIIGRNHTVEDTRHAFALARECGFD-NINMDLIVGLPG 330

Query: 342 ETDDDFRATMDLVDKIGYAQAFSF 365
           E  DD   T+  +  +        
Sbjct: 331 EHKDDVEHTLKEIQALDPDSLTIH 354


>gi|56460068|ref|YP_155349.1| lipoyl synthase [Idiomarina loihiensis L2TR]
 gi|56179078|gb|AAV81800.1| Lipoate synthase [Idiomarina loihiensis L2TR]
          Length = 310

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/217 (17%), Positives = 73/217 (33%), Gaps = 13/217 (5%)

Query: 153 DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVD 212
            + +    E  S  +       G  +F+ + + C + C FC V    G  +     +   
Sbjct: 49  SHGLHSVCEEASCPNLPECFNHGTASFMILGDICTRRCPFCDV--AHGRPLPPDPEEAEK 106

Query: 213 EARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI-KGLVRLRYTTSHPR 271
             + + D  V  + +   +    R    DG    F+D +  + E  +  +++       R
Sbjct: 107 LGKTIRDMKVKYVVITSVD----RDDLRDGGAQHFADCIREIREHSENNIQVEVLVPDFR 162

Query: 272 DMSDCLIKAH-GDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330
                 I    G+   +  +    V     R+ K+            ++ + + VRPDI 
Sbjct: 163 GRMQVAIDILKGEAPDVFNHNLETV----PRLYKAARPGANYQWSLDLLQKYKEVRPDIR 218

Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
             S  +VG  GET ++    M  +           +Y
Sbjct: 219 TKSGLMVGL-GETKEEILEVMKDLRAHDVDMLTIGQY 254


>gi|261855863|ref|YP_003263146.1| lipoic acid synthetase [Halothiobacillus neapolitanus c2]
 gi|261836332|gb|ACX96099.1| lipoic acid synthetase [Halothiobacillus neapolitanus c2]
          Length = 337

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/254 (14%), Positives = 77/254 (30%), Gaps = 30/254 (11%)

Query: 127 VVGPQTYYRLPELLERARFGK------RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFL 180
           +   +   R P  +     G       + V  D  +    E  +  + G     G   F+
Sbjct: 42  IEPTKEMPRKPAWIRAKSQGGAEVQRLKKVLRDQGLHTVCEEANCPNLGECFAGGTATFM 101

Query: 181 TIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL 240
            + + C + C FC V    G        +    A  +   G+  + +   +    R    
Sbjct: 102 ILGDICTRRCPFCDV--AHGKPRPVDAEEPARLAETVAAMGLSYVVITSVD----RDDLR 155

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300
           DG    F+ ++ +L      + +   T   R      +         +           +
Sbjct: 156 DGGAGHFAAVIRALRSRCPNLTIEILTPDFRGREAIALDILAADPPDV----------FN 205

Query: 301 RILKSMNRRHTAYEY-------RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
             L+++   + A            ++  ++   PD+   S  ++G  GETDD  R  +  
Sbjct: 206 HNLETVPGLYRAARPGADYIGSLNLLAAMKERCPDVPTKSGLMLGL-GETDDQLREVLRD 264

Query: 354 VDKIGYAQAFSFKY 367
           +           +Y
Sbjct: 265 MRARNIDMLTLGQY 278


>gi|91978045|ref|YP_570704.1| radical SAM family protein [Rhodopseudomonas palustris BisB5]
 gi|91684501|gb|ABE40803.1| Radical SAM [Rhodopseudomonas palustris BisB5]
          Length = 527

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 46/336 (13%), Positives = 106/336 (31%), Gaps = 40/336 (11%)

Query: 57  NSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEE 116
                AD + ++  HI      +  + +      K +   +     V + G    A  + 
Sbjct: 71  EDFGWADAVFVSGMHI----QRQQMNDI-----CKRAHTYDLP---VAIGGPSVSACPD- 117

Query: 117 ILRRSPIVNVVVGPQTYYRLPELLERARFG--KRVVDTDYSVEDKFERLSIVDGGYNR-- 172
                P  + +   +      +L+ +      +      ++ ED+ +        Y    
Sbjct: 118 ---HYPSFDYLHVGELGDATDQLIAKLAHDVTRPKRQIIFTTEDRLDMTLFPVPAYELAE 174

Query: 173 -KRGVTAFLTIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVC-EITLLG 229
             + +   +    GC   C FC +P   G     ++  Q++ E  ++++ G+   +  + 
Sbjct: 175 CSKYLLGSIQYSSGCPYQCEFCDIPGLYGRNPRLKTPEQIIIELDRMVECGIRGSVYFVD 234

Query: 230 QNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMS----DCLIKAHGDLD 285
            N          G +    DLL  L+E +         +    ++      ++    +  
Sbjct: 235 DNFI--------GNRKAALDLLPHLAEWQKRTGFALQLACEATLNIAKRPEILSLMRE-- 284

Query: 286 VLMPYLHLPVQSGSDRILKSMNRRHTAY-EYRQIIDRIRSVRPDIAISSDFIVGFPGETD 344
                +   +++     LK+M + H       + +  I S    I + S  I+G   +T 
Sbjct: 285 AYFTTIFCGIETPDPVALKAMQKDHNMMVPILEGVRTISSY--GIEVVSGIILGLDTDTP 342

Query: 345 DDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           +     M  + +                TP  + LE
Sbjct: 343 ETGEFLMQFIAQSQIPLLTINLLQALPKTPLWDRLE 378


>gi|325920078|ref|ZP_08182050.1| lipoate synthase [Xanthomonas gardneri ATCC 19865]
 gi|325549448|gb|EGD20330.1| lipoate synthase [Xanthomonas gardneri ATCC 19865]
          Length = 337

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 46/236 (19%), Positives = 77/236 (32%), Gaps = 24/236 (10%)

Query: 161 ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS--QVVDEARKLI 218
           E  S  +       G   F+ + E C + C+FC V + R           +    A  + 
Sbjct: 82  EEASCPNIHECFSHGTATFMILGEVCTRRCSFCDVAHGRPK----PPDASEPASLATTVA 137

Query: 219 DNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD---MSD 275
           D G+  + +   +    R    DG    F D + ++       R+   T   R    M  
Sbjct: 138 DMGLKYVVVTSVD----RDDLRDGGAQHFVDCISAIRVSSPKTRIEILTPDFRGKGRMDR 193

Query: 276 CL-IKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSD 334
            L I A    DV    +        +     +           ++ R ++  P IA  S 
Sbjct: 194 ALEILALSPPDVFNHNIETVPDLYPN-----VRPGADYQWSLTLLQRFKAQHPSIATKSG 248

Query: 335 FIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN--MLEQVDENVKA 388
            ++G  GET +  +AT+  +           +Y     TP  +  M     E  KA
Sbjct: 249 IMLGL-GETMEQVQATLRDLRAHDVDMITIGQY--LQPTPHHHPVMRYWTPEEYKA 301


>gi|220906936|ref|YP_002482247.1| coproporphyrinogen III oxidase [Cyanothece sp. PCC 7425]
 gi|219863547|gb|ACL43886.1| oxygen-independent coproporphyrinogen III oxidase [Cyanothece sp.
           PCC 7425]
          Length = 405

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 39/242 (16%), Positives = 85/242 (35%), Gaps = 12/242 (4%)

Query: 175 GVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA 234
              A++ I   C + C +C  P +   + SR  +  ++   +++   +    +  Q +  
Sbjct: 10  PTAAYIHIPF-CRRRCFYCDFPISVVGDRSRGETPAINHYIEVLCQEIQLAPVPPQPLAT 68

Query: 235 WRGKGLDGEKCTFSDLLYSLSEIK---GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL 291
               G        + + + L  ++   G+      +      +  L +  G  D  +  L
Sbjct: 69  VFFGGGTPSLLDAAQIGHILQTVQDHLGIAASAEISLEVDPGTFTLAQMSGYRDRGVNRL 128

Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA-ISSDFIVGFPGETDDDFRAT 350
            L VQ+    +L  M R HT  E    ++ IR     +     D I G PG+T + +  +
Sbjct: 129 SLGVQAFQPELLSQMGRTHTVAEIHAAVEMIRQA--GLTNFGLDLISGLPGQTLEQWETS 186

Query: 351 MDLVDKIGYAQAFSFKYSPRLGTPGSNMLE----QVDENVKAERLLCL-QKKLREQQVSF 405
           +     +      ++      GT            + E+  + ++  L  ++LR      
Sbjct: 187 LQCAIDLQPTHVSTYDLVLEPGTVFGKRYSPGHTPLPEDEISAQMYELATERLRSAGYEH 246

Query: 406 ND 407
            +
Sbjct: 247 YE 248


>gi|148827184|ref|YP_001291937.1| lipoyl synthase [Haemophilus influenzae PittGG]
 gi|166230420|sp|A5UFJ8|LIPA_HAEIG RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|148718426|gb|ABQ99553.1| lipoyl synthase [Haemophilus influenzae PittGG]
          Length = 320

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/235 (14%), Positives = 78/235 (33%), Gaps = 12/235 (5%)

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           + +    E  S  +       G   F+ +   C + C FC V    G  +     +    
Sbjct: 61  HGLHSVCEEASCPNLHECFNHGTATFMILGAICTRRCPFCDV--AHGKPLPPDPEEPQKL 118

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
           A  + D  +  + +   +    R    D     FS+ + ++ E+   +++       R  
Sbjct: 119 AETIQDMKLKYVVITSVD----RDDLPDRGAGHFSECVKAVRELNPNIKIEILVPDFRGR 174

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
               ++   D     P +         R+ K +          +++   + + P+I   S
Sbjct: 175 VTQALEKLKDNP---PDVFNHNLENVPRLYKEIRPGADYEWSLKLLREFKEMFPNIPTKS 231

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP--RLGTPGSNMLEQVDENV 386
             +VG  GET+++    M  +   G       +Y    R   P +  +   + ++
Sbjct: 232 GLMVGL-GETNEEILQVMQDLRDNGVTMLTLGQYLQPSRHHLPVARYVPPTEFDI 285


>gi|302874773|ref|YP_003843406.1| Radical SAM domain-containing protein [Clostridium cellulovorans
           743B]
 gi|307690612|ref|ZP_07633058.1| Radical SAM domain-containing protein [Clostridium cellulovorans
           743B]
 gi|302577630|gb|ADL51642.1| Radical SAM domain protein [Clostridium cellulovorans 743B]
          Length = 349

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 42/242 (17%), Positives = 81/242 (33%), Gaps = 19/242 (7%)

Query: 173 KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNV 232
           K  +       EGC   C FC      G   S  +       R  I+     I  +  N 
Sbjct: 4   KHVIIPIFVPHEGCPHNCVFCNQNTITGN--SEVIDD--KFVRNTIEE---YIETIDINN 56

Query: 233 NAWRGKGLDGEKCTFS-DLLYSLSEI------KGLVRLRYTTSHPRDMSDCLIKAHGDLD 285
           +        G       +    L  +      K L++    ++ P  ++  +++      
Sbjct: 57  STIEVSFFGGTFTAIDIEKQRQLLAVAKEYKEKKLIKYIRLSTRPDYINHDILEHLRSYK 116

Query: 286 VLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDD 345
             +  + L VQS  D +LK   R H   +       I+       +    +VG PG+T++
Sbjct: 117 --VDIIELGVQSLDDEVLKKSGRGHNEKDVVFASRLIKEY--GFTLGLQVMVGLPGDTEE 172

Query: 346 DFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ-VDENVKAERLLCLQKKLREQQVS 404
               T + + ++       +       TP   M +Q + E    E+ + + K + +  + 
Sbjct: 173 KDIKTAEKIIEMKPTLVRIYPSLVITNTPMETMFKQGIYEPYTLEKAVEISKVIYKMFLK 232

Query: 405 FN 406
            N
Sbjct: 233 NN 234


>gi|167818072|ref|ZP_02449752.1| hypothetical protein Bpse9_23241 [Burkholderia pseudomallei 91]
          Length = 651

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 56/307 (18%), Positives = 102/307 (33%), Gaps = 44/307 (14%)

Query: 95  IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR---------- 144
            +   DL V++ G  A     +IL R P  +++V  +    LP +L+             
Sbjct: 102 KRREPDLPVLLGGPHATMLHRQILERFPQFDIIVRYEADEILPAVLDCLEQRTFDVIPGL 161

Query: 145 ------FGKRVVDTDYSVE-DKFERLSIVDG-GYNRKRGVTAFLTIQ--EGCDKFCTFCV 194
                  G  +  TD   + ++ +RL I     Y       + L I+   GC   CTFC 
Sbjct: 162 SWRATGHGAPLRFTDGKPKVEELDRLPIASYDHYPVDDLGLSMLRIEAGRGCPFACTFCS 221

Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL 254
                  + S  L        +L                +      D        ++   
Sbjct: 222 TAGFF--QRSFRLKSAERLVHELDILHRRYRV-------SDFKLDHDMFTVNRHKVMAFC 272

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
             + G       ++    + + L++   D       L+  V++GS+R+     +R     
Sbjct: 273 EAVAGRGYRWRASARIDCVDEALLRKMADAG--CVNLYFGVETGSERMQTICRKR----L 326

Query: 315 YRQIIDRIRSVRPDIAISSD--FIVGFPGETDDDFRATMDLVDKIG-----YAQAFSFKY 367
             ++++ I +      I +   FI G+P E   D   T+D++ +         Q      
Sbjct: 327 DLRLVEPILAAADSFGIETTASFITGYPQECGQDQDDTLDMIGRCARRPSCLTQLHMLA- 385

Query: 368 SPRLGTP 374
            P  GTP
Sbjct: 386 -PEPGTP 391


>gi|113969328|ref|YP_733121.1| lipoyl synthase [Shewanella sp. MR-4]
 gi|117919437|ref|YP_868629.1| lipoyl synthase [Shewanella sp. ANA-3]
 gi|123029888|sp|Q0HLK3|LIPA_SHESM RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|166230441|sp|A0KTV4|LIPA_SHESA RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|113884012|gb|ABI38064.1| lipoic acid synthetase [Shewanella sp. MR-4]
 gi|117611769|gb|ABK47223.1| lipoic acid synthetase [Shewanella sp. ANA-3]
          Length = 321

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/184 (14%), Positives = 59/184 (32%), Gaps = 14/184 (7%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V    G  +     + V  A+ + D  +  + +   +    R    DG   
Sbjct: 94  CTRRCPFCDV--AHGRPLKPDAEEPVKLAQTIRDMKLKYVVITSVD----RDDLRDGGAQ 147

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLD--VLMPYLHLPVQSGSDRIL 303
            F+D +  + ++   +++       R   D  +         V    L            
Sbjct: 148 HFADCIREIRKLNPEIKIEILVPDFRGRIDAALDILSTEPPDVFNHNLETAPMHY----- 202

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           +             ++ R +   P++   S  ++G  GET+++    +  + +       
Sbjct: 203 RKARPGANYQWSLDLLKRFKERHPNVPTKSGLMMGL-GETNEEIAQVLRDLREHKVEMLT 261

Query: 364 SFKY 367
             +Y
Sbjct: 262 LGQY 265


>gi|182434366|ref|YP_001822085.1| putative Fe-S oxidoreductase [Streptomyces griseus subsp. griseus
           NBRC 13350]
 gi|326774878|ref|ZP_08234143.1| Radical SAM domain protein [Streptomyces cf. griseus XylebKG-1]
 gi|178462882|dbj|BAG17402.1| putative Fe-S oxidoreductase [Streptomyces griseus subsp. griseus
           NBRC 13350]
 gi|326655211|gb|EGE40057.1| Radical SAM domain protein [Streptomyces cf. griseus XylebKG-1]
          Length = 482

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 63/361 (17%), Positives = 114/361 (31%), Gaps = 48/361 (13%)

Query: 46  DMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVV 105
                +  E       AD+ + +   +           L     + +   +     +VV 
Sbjct: 72  GRLAGEVVEAAARAHPADVYLFSPMTV----------NLYYAYAISDVVKRVHPGAVVVY 121

Query: 106 AGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDK------ 159
            G  A     E+  R P V+ VV  +    LP LL+    G  V D    V  +      
Sbjct: 122 GGVAATPLAHEVA-RHPSVDYVVVDRGERALPALLDALAGGGDVADVGNLVYRREGGATA 180

Query: 160 -----FERLSIVDGGYNRKR--GVTAFLTIQE-------GCDKFCTFCVVPYTRGIEISR 205
                +  L   D  + +           I+        GC   CTFC +          
Sbjct: 181 RTSRRYPDLMPADIPFPKVDLFPPGTGEDIRYLRQVYALGCPYKCTFCTIQTIGRRPEYF 240

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            L +V+ E R    +        G + + + G         ++  L    E  G +R   
Sbjct: 241 PLDRVIKEIRAYQKH-------YGDHHSIYWGDETFTLHPEYTLELLEALEQAGDIRYDC 293

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA-YEYRQIIDRIRS 324
            T       D +++          ++ + +++G        ++ H      R  + R+R 
Sbjct: 294 QTRLNCLTDDRILRKLKSSG--CQWVEIGLETGFQES-HETHKHHMKLDAVRDTLKRVRD 350

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLV----DKIGYAQAFSFKYSPRLGTPGSNMLE 380
               +A  S  + GFP ++ DD R ++D V    D+      + F   P  G+      E
Sbjct: 351 A--GLAACSFTVNGFPDQSPDDMRRSIDWVCRLLDEDLLQATYLFGLVPYPGSAMFEHPE 408

Query: 381 Q 381
           +
Sbjct: 409 R 409


>gi|160894019|ref|ZP_02074798.1| hypothetical protein CLOL250_01574 [Clostridium sp. L2-50]
 gi|156864397|gb|EDO57828.1| hypothetical protein CLOL250_01574 [Clostridium sp. L2-50]
          Length = 616

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/219 (14%), Positives = 78/219 (35%), Gaps = 10/219 (4%)

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           R G+ ++ T          L  +    +  +    +     GC   C++C+         
Sbjct: 179 REGEDIICTKPRGLTDLSELPFLYYDLDTFKNKIIYYESSRGCPFRCSYCL-SSIDKRVR 237

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
            RS   V  E +  +D+ V ++  + +  N      ++  +              G+   
Sbjct: 238 FRSFDLVKKELQFFLDHQVKQVKFIDRTFNCSHEHAMEIWRYINEHD-------NGITNF 290

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
            +  +    +++  ++    L      + + VQS + + ++ ++R     +  +I+ RI 
Sbjct: 291 HFEIAADI-LNEEELELVNSLRPGAIQMEIGVQSTNLQTIREIDRVMDVDKLAKIVARIH 349

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
               ++ +  D I G P E  + F  + + V  +   Q 
Sbjct: 350 QG-HNVHVHLDLIAGLPYEDYESFAHSFNDVYAMKPEQL 387


>gi|154505233|ref|ZP_02041971.1| hypothetical protein RUMGNA_02747 [Ruminococcus gnavus ATCC 29149]
 gi|153794431|gb|EDN76851.1| hypothetical protein RUMGNA_02747 [Ruminococcus gnavus ATCC 29149]
          Length = 599

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 42/286 (14%), Positives = 96/286 (33%), Gaps = 25/286 (8%)

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVV---GPQTYYRLPELL 140
           +  +  L     K    + + + G         ++ + P V  V+   G +T+  L E  
Sbjct: 81  ILYVEQLITEIHKVLPKMQIWLGGPEVSYNAVSVMEQYPQVTGVMCGEGEETFLELMEYW 140

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTI------------QEGCDK 188
            + R     +      E+   R +      +  +    +  I              GC  
Sbjct: 141 NQERESLDTIKGIVYRENGTCRQNPPRPVMDLSKVPFVYDHIEDFQNKIIYYESSRGCPF 200

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS 248
            C++C+          R+L  V  E +  ID+ V ++  + +  N      +     T+ 
Sbjct: 201 SCSYCL-SSIDKCLRFRNLELVKKELQFFIDHEVPQVKFVDRTFNCKHSHSM--AIWTYL 257

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
                     G     +  +    +++  ++    +   +  L + +QS +   +  + R
Sbjct: 258 KEHDR-----GKTNFHFEVAADL-LNEEEMELIASMRPGLIQLEIGIQSTNPETITEIRR 311

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           +    E ++I+ R++    ++    D I G P E  + F  +   V
Sbjct: 312 KMNFEEVKRIVKRVQEK-GNVHQHLDLIAGLPYEDYERFAQSFRDV 356


>gi|318042667|ref|ZP_07974623.1| Fe-S oxidoreductase [Synechococcus sp. CB0101]
          Length = 528

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 48/306 (15%), Positives = 92/306 (30%), Gaps = 39/306 (12%)

Query: 79  KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVV-VGPQTY---- 133
           +++  L  +R    +  +   +   V+ G       E++ R+ P   VV VG        
Sbjct: 124 ELWRNLRLVRRGLRAARRFQPEARAVLGGGAVSVFYEQLGRQLPRGTVVSVGEGEPLLEK 183

Query: 134 -----------------YRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGV 176
                               P L+     G      DYS       +      Y      
Sbjct: 184 LIRGESLEGERCFIAGAEPRPGLIHEQPAGMEKTACDYSY---IASIWPQLDWYLDGGDF 240

Query: 177 TAFLTIQEGCDKFCTFCVVPYTRGIEISR-SLSQVVDEARKLIDNGVCEITLLGQNVNAW 235
              +  + GC   C +CV     G  +    + +V+ E R+L   GV             
Sbjct: 241 YVGVQTKRGCPHNCCYCVYTVVEGKAVRVNPVEEVIAEMRQLYAKGVRGFWFTDAQFIPA 300

Query: 236 RGKGLDGEKCTFSDLLYSLSEIKGLVRLRY-TTSHPRDMSDCLIKAHGDLDVLMPYLHLP 294
           R    D +     +LL ++ + +G   +R+       ++   L +        M Y  + 
Sbjct: 301 RRYIEDAK-----ELLRAI-QAQGWSDIRWAAYIRADNLDAELAELMVATG--MDYFEIG 352

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPG--ETDDDFRATMD 352
           + SGS  +++ M   +      +    +   R            F    E  +  R T+ 
Sbjct: 353 ITSGSQELVRKMRMGYNLRTVLENCRLL--ARAGFREHVSVNYSFNVIDERPETIRQTVA 410

Query: 353 LVDKIG 358
              ++ 
Sbjct: 411 YHRELE 416


>gi|289578859|ref|YP_003477486.1| radical SAM protein [Thermoanaerobacter italicus Ab9]
 gi|289528572|gb|ADD02924.1| Radical SAM domain protein [Thermoanaerobacter italicus Ab9]
          Length = 349

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/205 (14%), Positives = 67/205 (32%), Gaps = 24/205 (11%)

Query: 175 GVTAFLTIQEGCDKFCTFCVVPYTRGIEI-----SRSLSQVVDEARKLIDNGVCEITLLG 229
            +   +     C+  C +C     RG             +++  A+     G+  I L  
Sbjct: 54  HLRGLIEFSNYCNNTCFYC---GLRGPNRTIKRYRMEPEEIIQCAKYGAAAGLKTIVLQS 110

Query: 230 QNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMP 289
                  G+    +  T   ++  + ++   V L       +D    L KA  D      
Sbjct: 111 -------GEDKYFKINTLCKIIEEIKKLDIAVTLSIGELSTKDY-AELKKAGADR----- 157

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
              L +++ +  + + ++   +     + +  +R +     + +  +VG PG+T +    
Sbjct: 158 -YLLRIETTNKELYQKLHPGMSYENRVRCLMDLREL--GYEVGTGSLVGLPGQTLEMLAD 214

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTP 374
            +    KI         + P   TP
Sbjct: 215 DLIFFKKIDADMLGIGPFIPCENTP 239


>gi|73749402|ref|YP_308641.1| radical SAM domain-containing protein [Dehalococcoides sp. CBDB1]
 gi|73661118|emb|CAI83725.1| radical SAM domain protein [Dehalococcoides sp. CBDB1]
          Length = 610

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 50/279 (17%), Positives = 106/279 (37%), Gaps = 31/279 (11%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGK 238
           + I  GC + C FC           R   +V+     ++DN G  EI+LL   ++     
Sbjct: 258 VEISRGCSRGCRFCSAGILYRPVRVRPAEEVITAVEGIMDNCGYDEISLLS--LSCSDYP 315

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
           G++G   T ++           + L   +      S  L+            L    ++ 
Sbjct: 316 GIEGLVKTLAEKYA-----DKHLALSLPSLRLTPDSVSLVNVLAGARK--SGLTFAPEAA 368

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPD--IAISSDFIVGFPGETDDDFRATMDLVDK 356
           S R+ + +N+  +     ++    R+       +    F++G P ETD+D  A   +V K
Sbjct: 369 SPRLQRVINKLTSEE---ELCATARTAFESGWTSFKMYFMIGLPTETDEDAAAICQMVGK 425

Query: 357 I-----------GYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLRE--QQV 403
           +              +     Y P+  TP      Q+DE     R   +++ L+    ++
Sbjct: 426 VNALSRIAPGRRPQIRLSLASYVPKAHTP-FQWEAQLDEESLYRRADIVRQGLKRWGIKL 484

Query: 404 SFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
           S++D  +  ++E +  +  +  G+++  + W +    ++
Sbjct: 485 SWSDTRM-SLLEAVFSRGDRRLGRVI-YTAWQKGAKFDA 521


>gi|320161653|ref|YP_004174878.1| hypothetical protein ANT_22520 [Anaerolinea thermophila UNI-1]
 gi|319995507|dbj|BAJ64278.1| hypothetical protein ANT_22520 [Anaerolinea thermophila UNI-1]
          Length = 638

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 48/244 (19%), Positives = 94/244 (38%), Gaps = 30/244 (12%)

Query: 179 FLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRG 237
            + I  GC + C FC           R + +++      ++  G  E+ LL         
Sbjct: 266 PIEIMRGCTRGCRFCHAGMVTRPVRERPVEEILQAIETALEATGYEEVGLLSL------- 318

Query: 238 KGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY--LHLPV 295
                +     +L+ ++++  G  ++  +    R  S   ++    L  L P     L  
Sbjct: 319 --ASSDYTHIQELVEAVTQQFGDQKITVSLPSLRIESFS-VELMKGLKSLKPSGGFTLAP 375

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD--IAISSDFIVGFPGETDDDFRATMDL 353
           ++ S+R+ + +N+      + QI++  R +       I   F++G P ET +D +A +DL
Sbjct: 376 EAASERMRRVINKFI---PHEQILETAREIFAHGWTTIKLYFMIGHPEETLEDVQAIIDL 432

Query: 354 VDKI-----------GYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQ 402
              +               A    + P+  TP   +     E ++A++ L LQ+ LR Q 
Sbjct: 433 CHAVLREGRRICGGRAKVHAGVSTFIPKPHTPFQWVSADTMEQIQAKQAL-LQQGLRGQG 491

Query: 403 VSFN 406
              N
Sbjct: 492 FKLN 495


>gi|319902698|ref|YP_004162426.1| Radical SAM domain protein [Bacteroides helcogenes P 36-108]
 gi|319417729|gb|ADV44840.1| Radical SAM domain protein [Bacteroides helcogenes P 36-108]
          Length = 617

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 59/360 (16%), Positives = 117/360 (32%), Gaps = 63/360 (17%)

Query: 76  AAEKVYSFLGRIRNL----KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ 131
             E+    +  I  +    K    +EG   L     C+   + E    R      +    
Sbjct: 204 TKEEFRQLIADIPQMVYLEKGVMPQEGDITLFSHEECLKDRKKEAANFRH-----IEEES 258

Query: 132 TYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNR-------KRGVTAFLTI-- 182
             Y    +L+       VV+  Y    + E     D  Y R        + + A+  I  
Sbjct: 259 NKYAASRILQAVGKQTVVVNPPYPPLTEAELDRSFDLPYTRLPHPKYKGKRIPAYDMIKF 318

Query: 183 ----QEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLI---DNGVCEITLLGQNVNA 234
                 GC   C FC +   +G   +SRS   ++ E + ++   D       L G + N 
Sbjct: 319 SVNLHRGCFGGCAFCTISAHQGKFIVSRSKESILKEVKAVMALPDFKGYLSDLGGPSANM 378

Query: 235 WRGKGLDGEKCT----------------------FSDLLYSLSEIKGLVRLRYTTSHPRD 272
           +R KG D   C                         D+ +++  + G+ +    +    D
Sbjct: 379 YRMKGRDESLCKKCKRPSCIYPKVCPNLNTNHGPLLDIYHAVDALPGIKKSFIGSGVRYD 438

Query: 273 M------SDCLIKAHGDLDV--LMPYLH----LPVQSGSDRILKSMNRRHTAYE--YRQI 318
           +         + ++        ++ ++     +  +  SD++L  M +   +    +++I
Sbjct: 439 LLLHQSKDPEVNRSTAQYTRELIVRHVSGRLKVAPEHTSDKVLDIMRKPPFSQFGEFKKI 498

Query: 319 IDRI-RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
            DRI R       +   FI   PG  ++D      L  ++ +       ++P   T  + 
Sbjct: 499 FDRINREEGMRQQLIPYFISSHPGCKEEDMAELAVLTKQLDFHLEQVQDFTPTPMTVATE 558


>gi|315303221|ref|ZP_07873871.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Listeria ivanovii FSL F6-596]
 gi|313628403|gb|EFR96886.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Listeria ivanovii FSL F6-596]
          Length = 388

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 36/200 (18%), Positives = 73/200 (36%), Gaps = 10/200 (5%)

Query: 186 CDKFCTFCVV--PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
           C+  C +C     +  G  +   +  ++ E    +  G          V    G      
Sbjct: 24  CEHICYYCDFNKVFLEGQPVDEYVDLLIKEMELTVAKGPIAPV---DTVFVGGGTPTTLN 80

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
           +   + L  ++     L +    +         L K     D  +  + + VQS ++ +L
Sbjct: 81  EAQIARLCTAIHNTLPLKKDIEFSFEANPGDLSLSKLQAMQDHGVNRISMGVQSFNNELL 140

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           K + R HT  +  Q ++ +R +  +  +S D I   PG+T+ DF+ T+     +      
Sbjct: 141 KKIGRIHTVKDVYQSVENMRKIGFE-NVSIDLIFSLPGQTEADFQDTLK--QALDLDLPH 197

Query: 364 SFKYS--PRLGTPGSNMLEQ 381
              YS      T   N++++
Sbjct: 198 YSAYSLIIEPKTIFYNLMQK 217


>gi|224501584|ref|ZP_03669891.1| coproporphyrinogen III oxidase [Listeria monocytogenes FSL R2-561]
          Length = 385

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 36/200 (18%), Positives = 73/200 (36%), Gaps = 10/200 (5%)

Query: 186 CDKFCTFCVV--PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
           C+  C +C     +  G  +   +  ++ E    +  G          V    G      
Sbjct: 21  CEHICYYCDFNKVFLEGQPVDEYVDLLIKEMELTVAKGPIAPV---DTVFVGGGTPTTLN 77

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
           +   + L  ++     L +    +         L K     D  +  + + VQS ++ +L
Sbjct: 78  EAQIARLCTAIHNTLPLKKDIEFSFEANPGDLSLSKLQAMQDHGVNRISMGVQSFNNELL 137

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           K + R HT  +  Q ++ +R +  +  +S D I   PG+T+ DF+ T+     +      
Sbjct: 138 KKIGRIHTVKDVYQSVENMRKIGFE-NVSIDLIFSLPGQTEADFQDTLK--QALDLDLPH 194

Query: 364 SFKYS--PRLGTPGSNMLEQ 381
              YS      T   N++++
Sbjct: 195 YSAYSLIIEPKTIFYNLMQK 214


>gi|16803516|ref|NP_465001.1| coproporphyrinogen III oxidase [Listeria monocytogenes EGD-e]
 gi|224500505|ref|ZP_03668854.1| coproporphyrinogen III oxidase [Listeria monocytogenes Finland
           1988]
 gi|254827764|ref|ZP_05232451.1| hemN [Listeria monocytogenes FSL N3-165]
 gi|284801863|ref|YP_003413728.1| coproporphyrinogen III oxidase [Listeria monocytogenes 08-5578]
 gi|284995005|ref|YP_003416773.1| coproporphyrinogen III oxidase [Listeria monocytogenes 08-5923]
 gi|16410905|emb|CAC99554.1| hemN [Listeria monocytogenes EGD-e]
 gi|258600144|gb|EEW13469.1| hemN [Listeria monocytogenes FSL N3-165]
 gi|284057425|gb|ADB68366.1| coproporphyrinogen III oxidase [Listeria monocytogenes 08-5578]
 gi|284060472|gb|ADB71411.1| coproporphyrinogen III oxidase [Listeria monocytogenes 08-5923]
          Length = 385

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 36/200 (18%), Positives = 73/200 (36%), Gaps = 10/200 (5%)

Query: 186 CDKFCTFCVV--PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
           C+  C +C     +  G  +   +  ++ E    +  G          V    G      
Sbjct: 21  CEHICYYCDFNKVFLEGQPVDEYVDLLIKEMELTVAKGPIAPV---DTVFVGGGTPTTLN 77

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
           +   + L  ++     L +    +         L K     D  +  + + VQS ++ +L
Sbjct: 78  EAQIARLCTAIHNTLPLKKDIEFSFEANPGDLSLSKLQAMQDHGVNRISMGVQSFNNELL 137

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           K + R HT  +  Q ++ +R +  +  +S D I   PG+T+ DF+ T+     +      
Sbjct: 138 KKIGRIHTVKDVYQSVENMRKIGFE-NVSIDLIFSLPGQTEADFQDTLK--QALDLDLPH 194

Query: 364 SFKYS--PRLGTPGSNMLEQ 381
              YS      T   N++++
Sbjct: 195 YSAYSLIIEPKTIFYNLMQK 214


>gi|118580197|ref|YP_901447.1| radical SAM domain-containing protein [Pelobacter propionicus DSM
           2379]
 gi|118502907|gb|ABK99389.1| Radical SAM domain protein [Pelobacter propionicus DSM 2379]
          Length = 352

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 44/213 (20%), Positives = 72/213 (33%), Gaps = 15/213 (7%)

Query: 174 RGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLID-NGVCEITLLGQNV 232
           R    F    +GC   C FC      G   S +L    + A ++ D +G  +   L    
Sbjct: 3   RITVPFFISHQGCPHTCVFCDQRSISGS--SGTLPDAQEIAARIADWHGSAQGRPLEV-- 58

Query: 233 NAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY-- 290
            A+ G                L+ +   +R    +S         + A  ++  L     
Sbjct: 59  -AFFGGTFTALPRQIQQ--RLLAAVHPFLRSGVVSSIRVSTRPDALDAE-NVPWLAGQGV 114

Query: 291 --LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFR 348
             + L VQS  D +L++  R H A      I RIR     +   +  I G PG+T     
Sbjct: 115 AIIELGVQSMDDAVLEAAGRGHDARASLDAIRRIREN--GLMAGAQLIPGLPGDTPATAC 172

Query: 349 ATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           A+++ V   G      +      GT  +    +
Sbjct: 173 ASLERVIDAGVDFVRIYPTVVLRGTELARRYGE 205


>gi|47095429|ref|ZP_00233039.1| oxygen-independent coproporphyrinogen III oxidase, putative
           [Listeria monocytogenes str. 1/2a F6854]
 gi|254898358|ref|ZP_05258282.1| coproporphyrinogen III oxidase [Listeria monocytogenes J0161]
 gi|254912150|ref|ZP_05262162.1| conserved hypothetical protein [Listeria monocytogenes J2818]
 gi|254936478|ref|ZP_05268175.1| hemN [Listeria monocytogenes F6900]
 gi|47016250|gb|EAL07173.1| oxygen-independent coproporphyrinogen III oxidase, putative
           [Listeria monocytogenes str. 1/2a F6854]
 gi|258609071|gb|EEW21679.1| hemN [Listeria monocytogenes F6900]
 gi|293590122|gb|EFF98456.1| conserved hypothetical protein [Listeria monocytogenes J2818]
          Length = 385

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 36/200 (18%), Positives = 73/200 (36%), Gaps = 10/200 (5%)

Query: 186 CDKFCTFCVV--PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
           C+  C +C     +  G  +   +  ++ E    +  G          V    G      
Sbjct: 21  CEHICYYCDFNKVFLEGQPVDEYVDLLIKEMELTVAKGPIAPV---DTVFVGGGTPTTLN 77

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
           +   + L  ++     L +    +         L K     D  +  + + VQS ++ +L
Sbjct: 78  EAQIARLCTAIHNTLPLKKDIEFSFEANPGDLSLSKLQAMQDHGVNRISMGVQSFNNELL 137

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           K + R HT  +  Q ++ +R +  +  +S D I   PG+T+ DF+ T+     +      
Sbjct: 138 KKIGRIHTVKDVYQSVENMRKIGFE-NVSIDLIFSLPGQTEADFQDTLK--QALDLDLPH 194

Query: 364 SFKYS--PRLGTPGSNMLEQ 381
              YS      T   N++++
Sbjct: 195 YSAYSLIIEPKTIFYNLMQK 214


>gi|115522665|ref|YP_779576.1| radical SAM domain-containing protein [Rhodopseudomonas palustris
           BisA53]
 gi|115516612|gb|ABJ04596.1| Radical SAM N-terminal domain protein [Rhodopseudomonas palustris
           BisA53]
          Length = 680

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 58/332 (17%), Positives = 107/332 (32%), Gaps = 53/332 (15%)

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           + + +    +  GD ++ +  C    + +E   R+  V          R   L++R    
Sbjct: 243 LDSAEEGAARRPGDSVIRLPSCEQVEQDKEAYARASRVLHRESNPGNARP--LVQRHGDR 300

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTA-------------FLTIQEGCDKFCTFC 193
              ++         E  S+ D  Y R    +               +TI  GC   CTFC
Sbjct: 301 DLWLNPPPIPLTTEEMDSVYDLPYARAPHPSYGAATIPAWDMIKNSVTIMRGCFGGCTFC 360

Query: 194 VVPYTRGIEI-SRSLSQVVDEARKLIDNGVCEITLL----GQNVNAWR------------ 236
            +    G  I SRS   ++ E  ++ D       ++    G   N +R            
Sbjct: 361 SITEHEGRIIQSRSEGSILQEIERIRDRTAGFTGVISDIGGPTANMYRMACKDVAIQTAC 420

Query: 237 ----------GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL-- 284
                      + L+        L   + E+KG+ R+   +    D++        +L  
Sbjct: 421 RRPSCVFPEICQNLNTSHDDLIKLYRKVREVKGVKRVMVASGVRYDLAVKSPAYIKELVT 480

Query: 285 DVLMPYLHLPVQSGSDRILKSMNRR----HTAYEYRQIIDRIRS-VRPDIAISSDFIVGF 339
             +  YL +  +      L  M +     +T   ++++ D           +   FI   
Sbjct: 481 HHVGGYLKIAPEHTERGPLDKMMKPGISAYTR--FKKMFDAAAEQAGKKYYLIPYFIAAH 538

Query: 340 PGETDDDFRATMDLVDKIGY--AQAFSFKYSP 369
           PG TD+D       + +  Y   Q  +F  SP
Sbjct: 539 PGTTDEDMMNLALWLKQNRYRADQVQTFLPSP 570


>gi|172046107|sp|Q5QYE5|LIPA_IDILO RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
          Length = 322

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/217 (17%), Positives = 73/217 (33%), Gaps = 13/217 (5%)

Query: 153 DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVD 212
            + +    E  S  +       G  +F+ + + C + C FC V    G  +     +   
Sbjct: 61  SHGLHSVCEEASCPNLPECFNHGTASFMILGDICTRRCPFCDV--AHGRPLPPDPEEAEK 118

Query: 213 EARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI-KGLVRLRYTTSHPR 271
             + + D  V  + +   +    R    DG    F+D +  + E  +  +++       R
Sbjct: 119 LGKTIRDMKVKYVVITSVD----RDDLRDGGAQHFADCIREIREHSENNIQVEVLVPDFR 174

Query: 272 DMSDCLIKAH-GDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330
                 I    G+   +  +    V     R+ K+            ++ + + VRPDI 
Sbjct: 175 GRMQVAIDILKGEAPDVFNHNLETV----PRLYKAARPGANYQWSLDLLQKYKEVRPDIR 230

Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
             S  +VG  GET ++    M  +           +Y
Sbjct: 231 TKSGLMVGL-GETKEEILEVMKDLRAHDVDMLTIGQY 266


>gi|254192090|ref|ZP_04898588.1| B12-binding/radical SAM domain protein [Burkholderia pseudomallei
           Pasteur 52237]
 gi|157987570|gb|EDO95337.1| B12-binding/radical SAM domain protein [Burkholderia pseudomallei
           Pasteur 52237]
          Length = 647

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 56/307 (18%), Positives = 102/307 (33%), Gaps = 44/307 (14%)

Query: 95  IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF--------- 145
            +   DL V++ G  A     +IL R P  +++V  +    LP +L+             
Sbjct: 98  KRREPDLPVLLGGPHATMLHRQILERFPQFDIIVRYEADEILPAVLDCLEQRTFDVIPGV 157

Query: 146 -------GKRVVDTDYSVE-DKFERLSIVDG-GYNRKRGVTAFLTIQ--EGCDKFCTFCV 194
                  G  +  TD   + ++ +RL I     Y       + L I+   GC   CTFC 
Sbjct: 158 SWRATGRGAPLRFTDGKPKVEELDRLPIASYDHYPVDDLGLSMLRIEAGRGCPFACTFCS 217

Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL 254
                  + S  L        +L                +      D        ++   
Sbjct: 218 TAGFF--QRSFRLKSAERLVHELDILHRRYRV-------SDFKLDHDMFTVNRHKVMAFC 268

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
             + G       ++    + + L++   D       L+  V++GS+R+     +R     
Sbjct: 269 EAVAGRGYRWRASARIDCVDEALLRKMADAG--CVNLYFGVETGSERMQTICRKR----L 322

Query: 315 YRQIIDRIRSVRPDIAISSD--FIVGFPGETDDDFRATMDLVDKIG-----YAQAFSFKY 367
             ++++ I +      I +   FI G+P E   D   T+D++ +         Q      
Sbjct: 323 DLRLVEPILAAADSFGIKTTASFITGYPQECGQDQDDTLDMIGRCARRPSCLTQLHMLA- 381

Query: 368 SPRLGTP 374
            P  GTP
Sbjct: 382 -PEPGTP 387


>gi|149910824|ref|ZP_01899458.1| hypothetical Fe-S oxidoreductase [Moritella sp. PE36]
 gi|149806158|gb|EDM66138.1| hypothetical Fe-S oxidoreductase [Moritella sp. PE36]
          Length = 812

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 52/283 (18%), Positives = 89/283 (31%), Gaps = 45/283 (15%)

Query: 161 ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLID 219
              S  D        +   + I  GC   C+FC +    G  I SRS   +V E   + D
Sbjct: 361 PHPSYGDQKIPAYDMIKTSINIMRGCFGGCSFCSITEHEGRVIQSRSEDSIVKEMEAIRD 420

Query: 220 N--GVCEIT--LLGQNVNAWR----------------------GKGLDGEKCTFSDLLYS 253
              G   +   L G   N ++                       K +D +     +L   
Sbjct: 421 KVPGFTGVISDLGGPTANMYKLGCMSAKAEATCRRLSCIFPTICKHMDTDHTPTINLYRR 480

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRR-- 309
             ++ G+ ++   +    D++    +   +L    +  YL +  +      L  M +   
Sbjct: 481 ARKVPGIKKILIASGVRYDLAIEDPRYVKELVQHHVGGYLKIAPEHTEKSPLDIMMKPGM 540

Query: 310 HTAYEYRQIIDRI-RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY--AQAFSFK 366
            T  +++++ DR          +   FI   PG  D D       + +  +   Q  +F 
Sbjct: 541 GTYDKFKEMFDRFSAEAGKKQYLIPYFISAHPGTNDKDMLTLALWLKQYKFKLDQVQNFY 600

Query: 367 YSPRLGTPGSNMLE--------QVDENV---KAERLLCLQKKL 398
            SP          E        + DE V   K  R   L K L
Sbjct: 601 PSPLANATAVYHTELNSLHKVRETDEKVVVPKGARQRRLHKAL 643


>gi|330811923|ref|YP_004356385.1| lipoyl synthase [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
 gi|327380031|gb|AEA71381.1| lipoyl synthase [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
          Length = 340

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/216 (17%), Positives = 73/216 (33%), Gaps = 14/216 (6%)

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS--QVV 211
           + +    E  S  + G     G   F+ + + C + C FC V + R       L   +  
Sbjct: 77  HKLHSVCEEASCPNLGECFSGGTATFMIMGDICTRRCPFCDVGHGRPK----PLDTNEPE 132

Query: 212 DEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPR 271
             A  + D  +  + +   +    R    DG    F+D +  + ++   V+L       R
Sbjct: 133 SLAIAIADLKLKYVVITSVD----RDDLRDGGAQHFADCIREIRKLSPNVQLETLVPDYR 188

Query: 272 DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAI 331
              D  ++         P +         R+ K+            ++ R + + P I  
Sbjct: 189 GRMDIALEITAAEP---PDVFNHNLETVPRLYKAARPGSDYQWSLTLLQRFKQMMPHIPT 245

Query: 332 SSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
            S  ++G  GETD++    M  + +         +Y
Sbjct: 246 KSGLMLGL-GETDEEVIEVMKRMREHDIDMLTLGQY 280


>gi|158337491|ref|YP_001518666.1| radical SAM domain-containing protein [Acaryochloris marina
           MBIC11017]
 gi|158307732|gb|ABW29349.1| radical SAM domain protein [Acaryochloris marina MBIC11017]
          Length = 528

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 44/305 (14%), Positives = 97/305 (31%), Gaps = 36/305 (11%)

Query: 79  KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVV----------- 127
           +++   G I+       +   +   VV G       E++  + P  ++V           
Sbjct: 119 ELWRNSGLIKRGLKRAQRYHSEAQTVVGGGAVSVFYEQLGTQLPKGSIVSVGEGEVLLEK 178

Query: 128 --VGPQTYYRLPELLERARFGKRVVDTDYSVEDK-------FERLSIVDGGYNRKRGVTA 178
              G +       ++       R++    +  DK          +      Y   +    
Sbjct: 179 LLTGQEFRDERCYVVGEKAPRDRMIHEWPTEIDKTACDYPYIASIWPDFEYYFESQDFYM 238

Query: 179 FLTIQEGCDKFCTFCVVPYTRGIEISR-SLSQVVDEARKLIDNGVCEITLL-GQNVNAWR 236
            +  + GC   C +CV     G  +      +VV E ++L + G+        Q + A R
Sbjct: 239 GVQTKRGCPHNCCYCVYTVIEGKRVRVNPAEEVVAEMQQLYNRGIRNFWFTDAQFIPARR 298

Query: 237 GKGLDGEKCTFSDLLYSLSEI--KGLVRLRY-TTSHPRDMSDCLIKAHGDLDVLMPYLHL 293
                       D +  L +I   GL  + +       +++  L          M Y  +
Sbjct: 299 Y---------IPDAIELLQKIIDAGLTDIHWAAYIRADNLTPELCDLMVKTG--MNYFEI 347

Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
            + SGS  +++ M   +      Q    +++   +  +S ++      E  +  R T+  
Sbjct: 348 GITSGSQELVRKMRMGYNLRTVLQNCRDLKTAGFNDLVSVNYSFNVIDERPETIRQTIAY 407

Query: 354 VDKIG 358
             ++ 
Sbjct: 408 HRELE 412


>gi|189464021|ref|ZP_03012806.1| hypothetical protein BACINT_00356 [Bacteroides intestinalis DSM
           17393]
 gi|189438594|gb|EDV07579.1| hypothetical protein BACINT_00356 [Bacteroides intestinalis DSM
           17393]
          Length = 337

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/148 (22%), Positives = 60/148 (40%), Gaps = 12/148 (8%)

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPR--DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
            F ++  ++ ++ G  +    T      D+++   +    L      + + +Q+  D  L
Sbjct: 30  DFKEVFKTIEQVYGTRKATEVTLEANPDDLTEEYTQMLRTLP--FNRISMGIQTFDDATL 87

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDI-AISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           + +NRRH A +  + + R R        IS D I G PGET   +   +     +     
Sbjct: 88  RLLNRRHNAAQAIEAVQRCRQA--GFQNISIDLIYGLPGETGQRWAQDLQQAVSLNVEHI 145

Query: 363 FSFKYSPRLGTPGSNMLE-----QVDEN 385
            ++      GTP   ML+     QVDE+
Sbjct: 146 SAYHLIYEEGTPLYKMLQQHSVSQVDED 173


>gi|332527501|ref|ZP_08403553.1| lipoyl synthase [Rubrivivax benzoatilyticus JA2]
 gi|332111908|gb|EGJ11886.1| lipoyl synthase [Rubrivivax benzoatilyticus JA2]
          Length = 322

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 40/218 (18%), Positives = 72/218 (33%), Gaps = 10/218 (4%)

Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209
           V  +  +    E  S  + G    +G   F+ + + C + C FC V + R   +     +
Sbjct: 57  VLREQKLHTVCEEASCPNIGECFGKGTATFMIMGDKCTRRCPFCDVGHGRPDPL--DAEE 114

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSH 269
               A+ +    +  + +   +    R    DG    F D + ++ E     R+      
Sbjct: 115 PKKLAQTVAALKLKYVVVTSVD----RDDLRDGGAQHFVDCITAIREASPATRIEVLVP- 169

Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329
             D    L KA   L    P +         R+ K             ++ R +   P +
Sbjct: 170 --DFRGRLDKALAILKTAPPDVMNHNLETVPRLYKEARPGADYAFSLNLLKRFKEEVPAV 227

Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
              S  +VG  GETD++    M  +   G       +Y
Sbjct: 228 PTKSGLMVGL-GETDEEILEVMRDMRAHGIEMLTIGQY 264


>gi|147921029|ref|YP_685161.1| redox-active protein [uncultured methanogenic archaeon RC-I]
 gi|110620557|emb|CAJ35835.1| predicted redox-active protein (CxxC motif) [uncultured
           methanogenic archaeon RC-I]
          Length = 557

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/259 (14%), Positives = 85/259 (32%), Gaps = 31/259 (11%)

Query: 184 EGC-DKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQ-NVNAWRGKGLD 241
            GC    C+FC      G    R ++ +  E   L D G     L  Q ++  +   G +
Sbjct: 188 RGCFRGNCSFC-TEKFYGRPDFRPVTDIAAEVSALYDMGARYFRLGRQPDILTYMADGDE 246

Query: 242 GEKCTFSDLLYSLSE-----IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY------ 290
                  + +  L          L  L    ++P  ++    ++   L  ++ +      
Sbjct: 247 EFPRPNPEAIERLYSSIRKVAPQLKVLHMDNANPGTIARYPDESRAVLKSIVRHHTSGDV 306

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV--------RPDIAISSDFIVGFPGE 342
               ++S    +++  N +    E +  I  +  +         P++    +F+ G  GE
Sbjct: 307 AAFGMESADPHVIRLNNLKAQPEEVKDAIRIVNEIGGARGASGLPELLPGLNFVHGLMGE 366

Query: 343 TDDDFRATMDLVDKIGYA-----QAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKK 397
           T   FR   + ++ +        +    +  P  GT  +     V E +  +        
Sbjct: 367 TKQTFRLNYEFLESLLAENLLVRRINVRQVMPFEGTCMA----DVGEKIANKHKGVFHAY 422

Query: 398 LREQQVSFNDACVGQIIEV 416
             + +   +   + +++ V
Sbjct: 423 KEKIREHIDLEMLKRVVPV 441


>gi|84388973|ref|ZP_00991181.1| lipoyl synthase [Vibrio splendidus 12B01]
 gi|84377037|gb|EAP93909.1| lipoyl synthase [Vibrio splendidus 12B01]
          Length = 321

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/182 (15%), Positives = 60/182 (32%), Gaps = 10/182 (5%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V    G  ++    +    A+ + D  +  + +   +    R    DG   
Sbjct: 94  CTRRCPFCDV--AHGRPVAPEAEEPKKLAKTIKDMKLKYVVITSVD----RDDLRDGGAQ 147

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
            F+D    + E    +R+       R   D  +    D     P +       + R+ + 
Sbjct: 148 HFADCNREIREQNPNIRIETLVPDFRGRMDVALDLMKDNP---PDVFNHNLETAPRLYRK 204

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
                       ++ + +   P I   S  ++G  GET ++    +  + + G       
Sbjct: 205 ARPGANYKWSLDLLKKFKEQHPTIPTKSGVMMGL-GETKEEIVQVLKDLREHGVTMLTLG 263

Query: 366 KY 367
           +Y
Sbjct: 264 QY 265


>gi|145641835|ref|ZP_01797410.1| lipoyl synthase [Haemophilus influenzae R3021]
 gi|229846945|ref|ZP_04467051.1| lipoyl synthase [Haemophilus influenzae 7P49H1]
 gi|145273457|gb|EDK13328.1| lipoyl synthase [Haemophilus influenzae 22.4-21]
 gi|229810029|gb|EEP45749.1| lipoyl synthase [Haemophilus influenzae 7P49H1]
          Length = 320

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/214 (15%), Positives = 71/214 (33%), Gaps = 10/214 (4%)

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           + +    E  S  +       G   F+ +   C + C FC V    G  +     +    
Sbjct: 61  HGLHSVCEEASCPNLHECFNHGTATFMILGAICTRRCPFCDV--AHGKPLPPDPEEPQKL 118

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
           A  + D  +  + +   +    R    D     FS+ + ++ E+   +++       R  
Sbjct: 119 AETIQDMKLKYVVITSVD----RDDLPDRGAGHFSECVKAVRELNPNIKIEILVPDFRGR 174

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
               ++   D     P +         R+ K +          +++   + + P+I   S
Sbjct: 175 VTQALEKLKDNP---PDVFNHNLENVPRLYKEIRPGADYEWSLKLLREFKEMFPNIPTKS 231

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
             +VG  GET+++    M  +   G       +Y
Sbjct: 232 GLMVGL-GETNEEILQVMQDLRDNGVTMLTLGQY 264


>gi|331268321|ref|YP_004394813.1| hypothetical protein CbC4_0133 [Clostridium botulinum BKT015925]
 gi|329124871|gb|AEB74816.1| conserved hypothetical radical SAM protein [Clostridium botulinum
           BKT015925]
          Length = 310

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/208 (17%), Positives = 69/208 (33%), Gaps = 20/208 (9%)

Query: 181 TIQEGCDKFCTFCVVPYT------RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA 234
           TI +G    C +C    +      R   IS     + +  +     G             
Sbjct: 42  TISKG---GCIYCSERGSGDFAGDRNFSISSQFDNIKEMMKNKWKQGKYIAYFQAYTNTY 98

Query: 235 WRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL-DVLMPYLHL 293
                                   G+V L    + P  +SD +I    +    L  ++ L
Sbjct: 99  ASVSE-------LRKKYEEAINQDGVVALSI-ATRPDCLSDEIIDLISEYNKKLYTWVEL 150

Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
            +Q+ ++   K +NR +    +   ++R+R+   D+ + +  I G PGE  +D   T+  
Sbjct: 151 GLQTSNESTAKIINRGYKLPVFEDSLNRLRTRNIDVVVHT--IFGLPGEEKEDMLNTIKY 208

Query: 354 VDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           + +               GTP   + EQ
Sbjct: 209 LREKDIQGIKIHLLHLLKGTPMVKLYEQ 236


>gi|255720899|ref|XP_002545384.1| lipoic acid synthetase, mitochondrial precursor [Candida tropicalis
           MYA-3404]
 gi|306755823|sp|C5M276|LIPA_CANTT RecName: Full=Lipoyl synthase, mitochondrial; AltName: Full=Lipoate
           synthase; Short=LS; Short=Lip-syn; AltName: Full=Lipoic
           acid synthase; Flags: Precursor
 gi|240135873|gb|EER35426.1| lipoic acid synthetase, mitochondrial precursor [Candida tropicalis
           MYA-3404]
          Length = 377

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 36/214 (16%), Positives = 86/214 (40%), Gaps = 10/214 (4%)

Query: 156 VEDKFERLSIVDGGYNRKRGVTA-FLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEA 214
           V ++ +  +I +    +K   TA  + + + C + C FC V   R        ++  + A
Sbjct: 97  VCEEAKCPNISECWGGKKSEATATIMLLGDTCTRGCRFCSVKTNRKPAA-PDPNEPENTA 155

Query: 215 RKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMS 274
             +   G+  + L   +    R   +DG     ++ +  + +    + +       R   
Sbjct: 156 EAIKRWGLGYVVLTTVD----RDDLVDGGARHLAETVEKIKQKAPQILVEVLGGDFRG-D 210

Query: 275 DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSD 334
             +++   +  + + Y H  +++  D      +RR T  +   +++R +  +P +   + 
Sbjct: 211 LDMVEILANSGLDV-YAH-NLETVEDLTPHIRDRRATYRQSLAVLERAKKTKPSLVTKTS 268

Query: 335 FIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
            ++GF GETD+    T+  + +IG       +Y 
Sbjct: 269 LMLGF-GETDEQIMKTLKDLREIGCDVVTFGQYM 301


>gi|224824000|ref|ZP_03697108.1| lipoic acid synthetase [Lutiella nitroferrum 2002]
 gi|224603419|gb|EEG09594.1| lipoic acid synthetase [Lutiella nitroferrum 2002]
          Length = 324

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 41/259 (15%), Positives = 81/259 (31%), Gaps = 18/259 (6%)

Query: 116 EILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDT------DYSVEDKFERLSIVDGG 169
           E + R P+  V   P    R PE +  A  G R V        +  +    E  S  + G
Sbjct: 21  EKMARIPVKVVATEPGQMQRKPEWIRAAFPGSREVVELKKVLREQKLHTVCEEASCPNLG 80

Query: 170 YNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLG 229
                G   F+ + + C + C FC V + R   +    ++    A  +    +  + +  
Sbjct: 81  ECFSHGTATFMIMGDICTRRCPFCDVGHGRPNPL--DAAEPQRLAETIAAMRLKYVVITS 138

Query: 230 QNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAH-GDLDVLM 288
            +    R    DG    F+  +     +   +++       R      + A       + 
Sbjct: 139 VD----RDDLRDGGVAHFAACIREARRLNPALKIETLVPDFRGRLGIALDALEATPPDVF 194

Query: 289 PYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFR 348
            +    V     R+ +            +++       PD+   S  ++G  GET ++  
Sbjct: 195 NHNLETV----PRLYREARPGADYLHSLKLLQEFHYAVPDVPTKSGLMLGL-GETREEVE 249

Query: 349 ATMDLVDKIGYAQAFSFKY 367
             M  +           +Y
Sbjct: 250 QVMRDLRAHDVEMLTLGQY 268


>gi|167913219|ref|ZP_02500310.1| radical SAM domain/B12 binding domain protein [Burkholderia
           pseudomallei 112]
          Length = 651

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 56/307 (18%), Positives = 102/307 (33%), Gaps = 44/307 (14%)

Query: 95  IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF--------- 145
            +   DL V++ G  A     +IL R P  +++V  +    LP +L+             
Sbjct: 102 KRREPDLPVLLGGPHATMLHRQILERFPQFDIIVRYEADEILPAVLDCLEQRTFDVIPGV 161

Query: 146 -------GKRVVDTDYSVE-DKFERLSIVDG-GYNRKRGVTAFLTIQ--EGCDKFCTFCV 194
                  G  +  TD   + ++ +RL I     Y       + L I+   GC   CTFC 
Sbjct: 162 SWRATGRGAPLRFTDGKPKVEELDRLPIASYDHYPVDDLGLSMLRIEAGRGCPFACTFCS 221

Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL 254
                  + S  L        +L                +      D        ++   
Sbjct: 222 TAGFF--QRSFRLKSAERLVHELDILHRRYRV-------SDFKLDHDMFTVNRHKVMAFC 272

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
             + G       ++    + + L++   D       L+  V++GS+R+     +R     
Sbjct: 273 EAVAGRGYRWRASARIDCVDEALLRKMADAG--CVNLYFGVETGSERMQTICRKR----L 326

Query: 315 YRQIIDRIRSVRPDIAISSD--FIVGFPGETDDDFRATMDLVDKIG-----YAQAFSFKY 367
             ++++ I +      I +   FI G+P E   D   T+D++ +         Q      
Sbjct: 327 DLRLVEPILAAADSFGIKTTASFITGYPQECGQDQDDTLDMIGRCARRPSCLTQLHMLA- 385

Query: 368 SPRLGTP 374
            P  GTP
Sbjct: 386 -PEPGTP 391


>gi|323302932|gb|EGA56736.1| Lip5p [Saccharomyces cerevisiae FostersB]
          Length = 313

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 87/235 (37%), Gaps = 16/235 (6%)

Query: 167 DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEIT 226
            GG ++ +     + + + C + C FC V   R       +    + A  +   G+  + 
Sbjct: 61  WGGKDKSKATATIMLLGDTCTRGCRFCSVKTNRTPSKPDPME-PENTAEAIKRWGLGYVV 119

Query: 227 LLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV 286
           L   +    R   +DG     ++ +  + + K    L  T S        ++       +
Sbjct: 120 LTTVD----RDDLVDGGANHLAETVRKI-KQKAPNTLVETLSGDFRGDLKMVDIMAQCGL 174

Query: 287 -LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDD 345
            +  +    V+S +  +     RR T  +   +++R ++  P +   +  ++G  GETD+
Sbjct: 175 DVYAHNLETVESLTPHVRD---RRATYRQSLSVLERAKATVPSLITKTSIMLGL-GETDE 230

Query: 346 DFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLRE 400
               T+  +  I        +Y  R     +    +V E VK E+    +++  E
Sbjct: 231 QITQTLKDLRNIQCDVVTFGQYM-RP----TKRHMKVVEYVKPEKFDYWKERALE 280


>gi|237736446|ref|ZP_04566927.1| Fe-S oxidoreductase [Fusobacterium mortiferum ATCC 9817]
 gi|229421488|gb|EEO36535.1| Fe-S oxidoreductase [Fusobacterium mortiferum ATCC 9817]
          Length = 585

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 48/268 (17%), Positives = 91/268 (33%), Gaps = 27/268 (10%)

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           KR +  D +  + +E   +        R   A + IQ GC + C FC           RS
Sbjct: 209 KRAIVADLNNTEYYEDQIVPYINIVHDR---ATVEIQRGCSRGCRFCQAGIVYRPVRERS 265

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
           L + ++   K+I             V+       D  K    +L+  +        L  +
Sbjct: 266 LEKNLELIEKMIKKTGY------GEVSLSSLSSSDYSKID--ELIKGVKSKNAHRNLGVS 317

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
               R  +  +  A               ++GS R+   +N+     +  +  +   +VR
Sbjct: 318 LPSLRMNTHSVEVAEDISGGKRTGFTFAPEAGSQRMRDIINKGVNEEDVLETAEA--AVR 375

Query: 327 PDI-AISSDFIVGFPGETDDDFRATMDLVDKIGYAQA-----------FSFKYSPRLGTP 374
                +   F++G P ETD+D +   +L  K+   +                + P+  TP
Sbjct: 376 GGWETLKFYFMIGLPFETDEDVKGIYELAKKV-VDRCRPINKRLNVTVSVSNFVPKPHTP 434

Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQ 402
                EQ+D      +   L++  + Q+
Sbjct: 435 -FQWAEQMDFAEMKRKHALLRELFKGQK 461


>gi|71282264|ref|YP_268447.1| lipoyl synthase [Colwellia psychrerythraea 34H]
 gi|123761060|sp|Q484R8|LIPA_COLP3 RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|71148004|gb|AAZ28477.1| lipoic acid synthetase [Colwellia psychrerythraea 34H]
          Length = 328

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/208 (17%), Positives = 69/208 (33%), Gaps = 12/208 (5%)

Query: 161 ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG-IEISRSLSQVVDEARKLID 219
           E  S  +       G   F+ + + C + C FC V + R     S    +    A  L D
Sbjct: 76  EEASCPNLSECFNHGTATFMILGDICTRRCPFCDVGHGRPLAPKS---DEPKKLANSLKD 132

Query: 220 NGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIK 279
            G+  + +   +    R    DG    F+D +  + E     ++       R   D  ++
Sbjct: 133 MGLKYVVITSVD----RDDLRDGGAQQFADCVKEIGEQAPNTKVEILVPDFRGRMDRALE 188

Query: 280 AHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGF 339
                    P++       + R+   +           ++ R     PD+   S  +VG 
Sbjct: 189 ILNQNP---PHVFNHNMETAPRLYTKVRPGANYQWSLDLLKRFGEANPDVTTKSGLMVGL 245

Query: 340 PGETDDDFRATMDLVDKIGYAQAFSFKY 367
            GET+++    M  +   G       +Y
Sbjct: 246 -GETNEEILEVMQDLRDHGVTMLTVGQY 272


>gi|281358021|ref|ZP_06244505.1| Radical SAM domain protein [Victivallis vadensis ATCC BAA-548]
 gi|281315394|gb|EFA99423.1| Radical SAM domain protein [Victivallis vadensis ATCC BAA-548]
          Length = 601

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 52/280 (18%), Positives = 100/280 (35%), Gaps = 44/280 (15%)

Query: 144 RFGKRVVDTDYSVE-------DKFERLSIVDGGYNRKRG-VTAFLTIQ------EGCDKF 189
           R+G R+V  +   E       DK   L      + + +G + AF TI+       GC   
Sbjct: 256 RYGDRIVVIEPPPEVLTPEELDKVHELPYARMPHPKYKGRIPAFETIKDSIQAVRGCPGG 315

Query: 190 CTFCVVPYTRGIEI-SRSLSQVVDEARKLIDNGVCEITL--LGQNVNAWRGKGLDGEKCT 246
           C FC +   +G  + SRS   ++ E   + D    + T+  +G           D E+C 
Sbjct: 316 CAFCGLVVHQGRHVMSRSEDSIMRELDAIADQPFFKGTVSDVGGAAGNIYQSRYDLERCR 375

Query: 247 ----------------------FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL 284
                                    LL  +S    +  +   +    D++    +   +L
Sbjct: 376 RCKRSSCLYPAPCPNYTCTGLEIVRLLRRMSAHPKVKHVYINSGIRLDLALRQPELLREL 435

Query: 285 --DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR--QIIDRIRSVR-PDIAISSDFIVGF 339
               +  +L +  +  +  +LK M +      Y+  ++ ++I      +  +   FI  F
Sbjct: 436 ISKHVSGHLKVAPEHLNPEVLKLMRKSSAEEFYKFMELFEKISKECGKEQYLIPLFISNF 495

Query: 340 PGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
           PG +  + +   D ++K  ++      Y P   T G+ M 
Sbjct: 496 PGCSGKEMKTVDDFLEKHHWSLQQVQDYIPLPMTMGAAMY 535


>gi|21232880|ref|NP_638797.1| lipoyl synthase [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|66767049|ref|YP_241811.1| lipoyl synthase [Xanthomonas campestris pv. campestris str. 8004]
 gi|23821821|sp|Q8P590|LIPA_XANCP RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|81306967|sp|Q4UYT2|LIPA_XANC8 RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|21114711|gb|AAM42721.1| lipoic acid synthetase [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|66572381|gb|AAY47791.1| lipoic acid synthetase [Xanthomonas campestris pv. campestris str.
           8004]
          Length = 337

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 42/235 (17%), Positives = 77/235 (32%), Gaps = 22/235 (9%)

Query: 161 ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS--QVVDEARKLI 218
           E  S  +       G   F+ + E C + C+FC V + R           +    A  + 
Sbjct: 82  EEASCPNIHECFSHGTATFMILGEVCTRRCSFCDVAHGRPK----PPDASEPASLATTVA 137

Query: 219 DNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD---MSD 275
           D G+  + +   +    R    DG    F D + ++       R+   T   R    M  
Sbjct: 138 DMGLKYVVVTSVD----RDDLRDGGAQHFVDCISAIRASAPKTRIEILTPDFRGKGRMDR 193

Query: 276 CLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDF 335
            L         +  +    +++  D    ++           ++ R ++  P IA  S  
Sbjct: 194 ALEILATSPPDVFNH---NIETVPDLY-PNVRPGADYQWSLTLLQRFKAQHPTIATKSGI 249

Query: 336 IVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN--MLEQVDENVKA 388
           ++G  GET +  + T+  +           +Y     TP  +  M     E  KA
Sbjct: 250 MLGL-GETMEQVQVTLRDLRAHDVDMITIGQY--LQPTPHHHPVMRYWTPEEYKA 301


>gi|116749601|ref|YP_846288.1| radical SAM domain-containing protein [Syntrophobacter fumaroxidans
           MPOB]
 gi|116698665|gb|ABK17853.1| Radical SAM domain protein [Syntrophobacter fumaroxidans MPOB]
          Length = 512

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 41/228 (17%), Positives = 77/228 (33%), Gaps = 18/228 (7%)

Query: 161 ERLSIVDGGY-NRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLI 218
           + + I      + K   +  +    GC   C FC +    G    ++   QV+ E   L 
Sbjct: 149 DNVPIPRWDLIDFKDYASMSIQFSRGCPFDCEFCDIIVLNGRVPRTKPNGQVIAELDALY 208

Query: 219 DNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT----TSHPRDMS 274
           D G      +  +          G K     LL  +   + + + R T     S      
Sbjct: 209 DRGWRGSVFIVDD-------NFIGNKQKVKSLLREIIAWQSVKKHRLTFFTEASVNLADD 261

Query: 275 DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT-AYEYRQIIDRIRSVRPDIAISS 333
             L+     +      + L +++ S+  LK   +         + +  I +    +A+  
Sbjct: 262 VELMNLM--VAAGFNKVFLGLETPSEASLKECGKAQNLRRSLSESVCAIHA--HGMAVMG 317

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
            FI+GF  +  D F+  ++ + K G   A     +   GT     LE+
Sbjct: 318 GFIIGFDNDPPDIFQRQVNFIQKNGIVTAMIGLLTALPGTRLYKRLEE 365


>gi|319891903|ref|YP_004148778.1| Lipoate synthase [Staphylococcus pseudintermedius HKU10-03]
 gi|317161599|gb|ADV05142.1| Lipoate synthase [Staphylococcus pseudintermedius HKU10-03]
 gi|323465006|gb|ADX77159.1| lipoic acid synthetase [Staphylococcus pseudintermedius ED99]
          Length = 305

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 43/256 (16%), Positives = 87/256 (33%), Gaps = 20/256 (7%)

Query: 112 AEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYN 171
            + EEILR+   + + +     Y   + + R   G   V  +    +  E          
Sbjct: 3   TKNEEILRKPDWLKIKLNTNENYTGLKKMMR-EKGLHTVCEEAKCPNIHECWG------- 54

Query: 172 RKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQN 231
            +R    F+ + + C + C FC V      E+   L +    A  +    +  + +    
Sbjct: 55  -ERRTATFMILGDVCTRACRFCAVKTGLPNEL--DLGEPERVADSVKQMNLKHVVITAV- 110

Query: 232 VNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL 291
               R    D     +++ +  + E+     +    S      + L         ++ + 
Sbjct: 111 ---ARDDLKDAGSNVYAETVRKVRELNPFTTIEILPSDMGGDYEALETLMAARPDILNHN 167

Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351
              V+  +      +  R T     + + R + ++PDI   S  +VG  GET ++   TM
Sbjct: 168 IETVRRLTP----RVRARATYDRTLEFLRRSKELQPDIPTKSSIMVGL-GETIEELHETM 222

Query: 352 DLVDKIGYAQAFSFKY 367
           D +   G       +Y
Sbjct: 223 DDLRANGVDILTIGQY 238


>gi|238926286|ref|ZP_04658046.1| coproporphyrinogen oxidase [Selenomonas flueggei ATCC 43531]
 gi|238885966|gb|EEQ49604.1| coproporphyrinogen oxidase [Selenomonas flueggei ATCC 43531]
          Length = 501

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 47/218 (21%), Positives = 80/218 (36%), Gaps = 25/218 (11%)

Query: 155 SVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP--YTRGIEISRSLSQVVD 212
             E    +L  +     R  G+   +     C   C +C  P     G    R+   V+ 
Sbjct: 154 MTEVAVRQLPFLAHEDARTVGIYVGIPF---CLSRCLYCSFPSHLLPGENTLRAFMDVLA 210

Query: 213 EARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
                    V  + L    V      G  G   +  D+ +  +E+  +V   +  S  R+
Sbjct: 211 RDLAAAAEDVRTLGLT---VGCIYIGG--GTPTSLPDVFF--AEMLKMVYNAFYRSSVRE 263

Query: 273 MSDCL----------IKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
            +             I A       +  + +  QS  +R L+ + R HT  +  +++  I
Sbjct: 264 FTVEAGRPDSMSAAKITAMKAYR--VTRVSVNPQSMQERTLERIGRHHTPSDIVRMLQDI 321

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
           R+   D+ I+ D I+G PGET +D RATM  V  +   
Sbjct: 322 RASM-DVHINMDVILGLPGETAEDVRATMAAVTALRPD 358


>gi|153834481|ref|ZP_01987148.1| radical SAM protein, family [Vibrio harveyi HY01]
 gi|148869117|gb|EDL68153.1| radical SAM protein, family [Vibrio harveyi HY01]
          Length = 314

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 48/232 (20%), Positives = 81/232 (34%), Gaps = 23/232 (9%)

Query: 181 TIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL 240
           TI  G    CTFC V      E+   +  + D+ +            L            
Sbjct: 39  TIGRG---GCTFCNVASFADEEV--QIKSIHDQLKDRAGEIHRAKKYLA---YFQAYTST 90

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV--LMPYLHLPVQSG 298
             E     ++     +   +V L    + P  + D ++    D        +L L +Q+ 
Sbjct: 91  YAEVQVLKNMYEEALKAADIVGL-CVGTRPDCVPDAVLDLLSDYVNQGYEIWLELGLQTA 149

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           ++  LK +NR H    Y +I  R R++   I + +  IVG P ET DD   T+  V ++G
Sbjct: 150 NNDTLKRINRGHDFECYAEITKRARAL--GINVCTHLIVGLPKETRDDNIETLRKVLEVG 207

Query: 359 YAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACV 410
                        G+  +          KA R   L+    E+ V+     +
Sbjct: 208 TDGIKLHGLHIVEGSTMA----------KAWRAGKLEAPELEEYVAIASEMI 249


>gi|194335428|ref|YP_002017222.1| Radical SAM domain protein [Pelodictyon phaeoclathratiforme BU-1]
 gi|194307905|gb|ACF42605.1| Radical SAM domain protein [Pelodictyon phaeoclathratiforme BU-1]
          Length = 929

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 50/264 (18%), Positives = 83/264 (31%), Gaps = 29/264 (10%)

Query: 110 AQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG-----KRVVDTDYSVEDKFERLS 164
           A   GE  L    +V VV G     ++  L+ +   G     K     D    D    + 
Sbjct: 96  AVVVGEGELALRDLVEVVRGNILIKKVSNLVYKLDNGVLEQNKSEEAPDLKDLDYPPSVD 155

Query: 165 IVDGGYNRKRGVTAFLTIQEGCDKF-CTFCVVPYTRGIEI--SRSLSQVVDEARKLIDNG 221
            V      KRG  A +    GC    C +C +   RG +   S S  +++     L+  G
Sbjct: 156 TVPEIV--KRGGNALVQASRGCPWSQCAYCTIFSFRGGKRWESFSNERIIANIELLVAQG 213

Query: 222 VCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY----------TTSHPR 271
           + EI          R            +    + E       R                 
Sbjct: 214 ITEIEFADDEFLGGRTSVRIRRCNILVEAFRKIRERVKDFSFRIFLEPSTIYRSNDISGN 273

Query: 272 DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAI 331
           +    L++      V +  +++ V+SGS++ L+    R+       +I     V  DI I
Sbjct: 274 EDIRKLLQELKS--VGLERVYIGVESGSNKQLE----RYKRDGRLDVIKGAIKVLTDIGI 327

Query: 332 SSDF-IVGFPGETDDDFRATMDLV 354
             D   + F  +T        D +
Sbjct: 328 DMDAGFIMF--DTFATLEELQDNI 349


>gi|229087482|ref|ZP_04219615.1| Lipoyl synthase [Bacillus cereus Rock3-44]
 gi|228695806|gb|EEL48658.1| Lipoyl synthase [Bacillus cereus Rock3-44]
          Length = 298

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/214 (17%), Positives = 78/214 (36%), Gaps = 13/214 (6%)

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           ++V ++ +  +I +    RK     F+ +   C + C FC V      E+   L +    
Sbjct: 37  HTVCEEAKCPNIHECWAVRK--TATFMILGAVCTRACRFCAVKTGLPTEL--DLQEPERV 92

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
           A  ++  G+  + +        R    DG    F++ + ++        +    S    +
Sbjct: 93  ADSVVHMGLKHVVITAV----ARDDLKDGGAAVFAETVRAVRRKNPFTSIEVLPSDMGGV 148

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
            + L         ++ +    V   SDR+      ++      + + R + ++PDI   S
Sbjct: 149 EENLKMLMDAKPDILNHNIETVSRLSDRV--RARAKYPRS--LEFLRRAKEMQPDIPTKS 204

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
             +VG  GET +D    MD +           +Y
Sbjct: 205 SIMVGL-GETREDLIEAMDDLRANNVDILTLGQY 237


>gi|297559915|ref|YP_003678889.1| lipoic acid synthetase [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296844363|gb|ADH66383.1| lipoic acid synthetase [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
          Length = 317

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 39/216 (18%), Positives = 75/216 (34%), Gaps = 18/216 (8%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC +    G   +    +    A  +   G+   T+ G      R    DG   
Sbjct: 81  CTRRCDFCNI--ATGKPTALDRMEPTKVANSVKTMGLRYATITGV----ARDDLEDGGAW 134

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
            +++ +  + E+     +           D L +  G    ++ +    V     RI K 
Sbjct: 135 LYAETVRKIHELNPGTGVELLIPDFNADPDQLAEVFGSRPEVLAHNVETV----PRIFKR 190

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           +          ++I   R+   ++   S+ I+G  GET ++    M  + + G       
Sbjct: 191 IRPGFRYERSLKVITEARA--DNLVTKSNLILGM-GETREEISEAMRDLHEAGCDLLTIT 247

Query: 366 KYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQ 401
           +Y  R     S +   +D  VK E  + L ++  E 
Sbjct: 248 QYL-RP----SKLHHPIDRWVKPEEFVELGQEAEEI 278


>gi|88798964|ref|ZP_01114545.1| hypothetical protein MED297_02157 [Reinekea sp. MED297]
 gi|88778191|gb|EAR09385.1| hypothetical protein MED297_02157 [Reinekea sp. MED297]
          Length = 732

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 53/305 (17%), Positives = 96/305 (31%), Gaps = 49/305 (16%)

Query: 112 AEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYN 171
                +   +  V  V      +    L+++    +  V+         E   + D  Y 
Sbjct: 315 RNDPALYAHASRVLHVE--ANPHNAHALVQKHGTREVWVNPPPIPLTTEEIDGVFDLPYA 372

Query: 172 RK-------RGVTAF------LTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKL 217
           R        + + A+      + I  GC   CTFC +    G  I SRS   ++ E   +
Sbjct: 373 RVPHPSYQGKPIPAYDMIKTSINIMRGCFGGCTFCSITEHEGRIIQSRSHESILREVEDI 432

Query: 218 IDN--GVCEIT--LLGQNVNA----WRGKGLDGEKCTFS------------------DLL 251
            D   G       L G   N      +   +       S                  +L 
Sbjct: 433 KDKVPGFSGALSDLGGPTANMYTLKCKDDDIQANCRRLSCVYPTICKNLQTSHKQTTELY 492

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRR 309
             +  + G+  +   +    D++    +   +L    +  YL +  +   DR LK M + 
Sbjct: 493 RKVRRVDGIHTVAVASGLRYDLAVEDPEYVKELVTHHVGGYLKIAPEHTEDRPLKMMMKP 552

Query: 310 --HTAYEYRQIIDRI-RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK--IGYAQAFS 364
              T   ++Q+ D+  R       +   FI   PG  D+D       + +  +   Q  +
Sbjct: 553 GMGTYDRFKQMFDQFSRQAGKKQYLIPYFIAAHPGCEDEDMVNLALWLKRQNMKVDQVQT 612

Query: 365 FKYSP 369
           F  SP
Sbjct: 613 FYPSP 617


>gi|329946957|ref|ZP_08294369.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Actinomyces sp. oral taxon 170 str. F0386]
 gi|328526768|gb|EGF53781.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Actinomyces sp. oral taxon 170 str. F0386]
          Length = 411

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 49/248 (19%), Positives = 86/248 (34%), Gaps = 21/248 (8%)

Query: 159 KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC----VVPYTRGIEISR-----SLSQ 209
           +  + ++       +R  + +L +   C   C +C        T G   S      +L+ 
Sbjct: 3   ELPQQAVAPAPNGSERPFSVYLHVPY-CRVRCGYCDFNTYTNLTMGQGASAKDFVGTLAG 61

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSH 269
            +  AR  +D+    +    Q V    G            +L  + E  GL      T+ 
Sbjct: 62  ELRAARSAMDSAGLPVRP-AQTVFVGGGTPTMLPASDLVTMLDLVRECFGLAPDAEVTTE 120

Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329
               S          +     +   +QS    +LK + R H      +++D  R     +
Sbjct: 121 ANPDSVDEAGLAALAEGGFTRVSFGMQSAVPHVLKVLERTHEPARVPRVVDWARRA--GL 178

Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN--------MLEQ 381
           + S D I G PGE+ +D++ ++D V +IG      +      GT   +        M E 
Sbjct: 179 STSLDLIYGAPGESLEDWQRSLDAVTQIGPDHVSVYALVIEEGTRMWSQVRRGELPMPED 238

Query: 382 VDENVKAE 389
            DE  K E
Sbjct: 239 DDEATKYE 246


>gi|78224687|ref|YP_386434.1| cobalamin B12-binding/radical SAM family protein [Geobacter
           metallireducens GS-15]
 gi|78195942|gb|ABB33709.1| Cobalamin B12-binding/Radical SAM [Geobacter metallireducens GS-15]
          Length = 677

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/185 (16%), Positives = 57/185 (30%), Gaps = 16/185 (8%)

Query: 177 TAFLTIQEGCDKFCTFC---VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVN 233
            A L +  GC   C +C   V+   R    S     + +        G   + L      
Sbjct: 200 IAILEVGRGCPHRCVYCSESVMWRRRTRTFSIP-RLIREMEELHGRFGAECLVLAYDQFT 258

Query: 234 AWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHL 293
           A        ++    +    + + +      Y  S    +   L+    +       +  
Sbjct: 259 A--------DRRFVEEFCNRVIDARLNRVPWYCISRLDSLDRPLLDLMREAG--CESMCY 308

Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
            + SGS R L  + +        Q +         +  +  F++GFP E  +D   T+ L
Sbjct: 309 GIDSGSRRTLAFIGKEIDEGILYQRVRETTEA--GMVPTLSFVIGFPEEEREDIDQTLFL 366

Query: 354 VDKIG 358
             K G
Sbjct: 367 ALKAG 371


>gi|320352526|ref|YP_004193865.1| oxygen-independent coproporphyrinogen III oxidase [Desulfobulbus
           propionicus DSM 2032]
 gi|320121028|gb|ADW16574.1| oxygen-independent coproporphyrinogen III oxidase [Desulfobulbus
           propionicus DSM 2032]
          Length = 383

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/208 (15%), Positives = 64/208 (30%), Gaps = 23/208 (11%)

Query: 186 CDKFCTFC----VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD 241
           C + C +C    +VP             +      +         +       +      
Sbjct: 16  CRRKCPYCSFFSIVPQA---------GDIRRYVETVRLQMRQLAAVPEIQALRFATVFFG 66

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRY--------TTSHPRDMSDCLIKAHGDLDVLMPYLHL 293
           G   +      +L+ +    R  +         T      +                L +
Sbjct: 67  GGTPSL-LPPEALATLLADCRAVFPFATEQPEITIEVNPGTIDPTGLRQLNRAGCNRLSI 125

Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
            +QS  DR L  + R HTA E   I+   R    +   S+D + G PG+T + ++  ++ 
Sbjct: 126 GIQSLDDRELHQLGRIHTADEALAILAAAREAGFENC-SADLMYGLPGQTVNSWQRGLER 184

Query: 354 VDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +   G      ++ +    TP +  L Q
Sbjct: 185 ILAAGIDHCSLYELTVEEHTPFARQLAQ 212


>gi|302335761|ref|YP_003800968.1| Coproporphyrinogen dehydrogenase [Olsenella uli DSM 7084]
 gi|301319601|gb|ADK68088.1| Coproporphyrinogen dehydrogenase [Olsenella uli DSM 7084]
          Length = 427

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 48/260 (18%), Positives = 89/260 (34%), Gaps = 29/260 (11%)

Query: 186 CDKFCTFCVVPY---TRGIEISRS-LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD 241
           C   C +C        R        L +++++  +L   G+    L G +     G    
Sbjct: 33  CAHKCPYCDFASRATARNDARMLPYLGKILEQYSELRSVGL----LEGCDTAYVGGGTPP 88

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
                  DL  ++ E+ G +      ++P  +   L+         +  + L VQS  D 
Sbjct: 89  MLGGGLVDLSLAIGEL-GTLSEFSMEANPESLPADLVGELAQTP--LTRVSLGVQSTDDV 145

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
            L ++ R H A +    ++ + S    +A+S D +   P ++D  +R ++  V   G   
Sbjct: 146 ELAALGRTHGARDALAAVESVASS--GLAVSCDLMCAIPHQSDATWRRSLADVLSAGATH 203

Query: 362 AFSFKYSPRLGTP-----GSNMLEQVDENVKAERLLCLQKKLREQQVSFND----ACVGQ 412
              +  S    TP          +  DE V+A R+      L    +   +    A  G+
Sbjct: 204 VSVYPLSIEEKTPFGARYAGTRPDFNDEAVQARRMEIACDALAAAGLRRYEVASYARPGR 263

Query: 413 IIEVLIEKHGKEKGKLVGRS 432
                       +    GRS
Sbjct: 264 ECR-------HNQTYWEGRS 276


>gi|255321022|ref|ZP_05362195.1| Fe-S oxidoreductase [Acinetobacter radioresistens SK82]
 gi|262379888|ref|ZP_06073043.1| Fe-S oxidoreductase [Acinetobacter radioresistens SH164]
 gi|255301986|gb|EET81230.1| Fe-S oxidoreductase [Acinetobacter radioresistens SK82]
 gi|262298082|gb|EEY85996.1| Fe-S oxidoreductase [Acinetobacter radioresistens SH164]
          Length = 799

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 62/328 (18%), Positives = 106/328 (32%), Gaps = 56/328 (17%)

Query: 117 ILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGV 176
           +++R    +V + P      P +         V D  Y+   +    S  D  +     +
Sbjct: 363 LVQRHGERDVWLNP------PPIPLTTEEMDYVFDLPYA---RLPHPSYADARFPAFDMI 413

Query: 177 TAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDNGVCEITLLGQ----- 230
              + I  GC   CTFC +    G  I +RS   ++ E  K+ D       ++       
Sbjct: 414 KFSVNIMRGCFGGCTFCSITEHEGRIIQNRSEESILREVEKIRDTAPGFTGIISDLGGPT 473

Query: 231 -NVNAWRGKGLDGEK--------------------CTFSDLLYSLSEIKGLVRLRYTTSH 269
            N+     K  + EK                       + L      IKG+ ++   +  
Sbjct: 474 ANMYRLHCKDPEIEKNCRKPSCVYPGVCQNLHTDHAPLTQLYRKARVIKGIKKILIGSGL 533

Query: 270 PRDMSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRR--HTAYEYRQIIDRI-RS 324
             D++    +   +L    +  YL +  +      L  M +    T   ++Q+ DR  + 
Sbjct: 534 RYDLAVLNPEYVKELVQHHVGGYLKIAPEHTEKGPLSKMMKPGIGTYDRFKQMFDRFSKE 593

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY--AQAFSFKYSPR------------ 370
              +  +   FI   PG TD D       + K G+   Q  +F  SP             
Sbjct: 594 AGKEQYLIPYFIAAHPGTTDYDMMNLAVWLKKNGFRADQVQTFYPSPMATATTMYHTSKN 653

Query: 371 LGTPGSNMLEQVDENVKAERLLCLQKKL 398
                +   E VD  VK E+   L K  
Sbjct: 654 PLAKVARYTEDVDI-VKGEKRRRLHKAF 680


>gi|224540212|ref|ZP_03680751.1| hypothetical protein BACCELL_05125 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224518174|gb|EEF87279.1| hypothetical protein BACCELL_05125 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 605

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 50/276 (18%), Positives = 94/276 (34%), Gaps = 54/276 (19%)

Query: 151 DTDYSVEDKFERLSIVDGGYNR---KRGVTAFLTIQEGCDKFCTFCVVPYTRGIE-ISRS 206
           + D+S +  + RL        R      +   + I  GC   C FC +   +G   +SRS
Sbjct: 274 ELDHSYDLPYTRLPHPKYKGKRIPAYDMIKFSVNIHRGCFGGCAFCTISAHQGKFIVSRS 333

Query: 207 LSQVVDEARKLIDNGVCEITLL---GQNVNAWRGKGLDGEKCT----------------- 246
              ++ E + L++    +  L    G + N +R KG D   C                  
Sbjct: 334 KESILKEVKALMELPDFKGYLSDLGGPSANMYRMKGRDENICKKCKRPSCIHPKVCPNLN 393

Query: 247 -----FSDLLYSLSEIKGLVRLRY-----------------TTSHPRDMSDCLIKAHGDL 284
                  D+ +++  + G+ +                    T     + +  LI  H   
Sbjct: 394 TDHRPLLDIYHAVDTLPGIKKSFIGSGVRYDLLLHQSKDPATNKSTAEYTRELIARH--- 450

Query: 285 DVLMPYLHLPVQSGSDRILKSMNRR--HTAYEYRQIIDRI-RSVRPDIAISSDFIVGFPG 341
             +   L +  +  SDR+L  M +       E+++I DRI R       +   FI   PG
Sbjct: 451 --VSGRLKVAPEHTSDRVLSIMRKPSFGQFQEFKKIFDRINREEGLRQQLIPYFISSHPG 508

Query: 342 ETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
             ++D      +  ++ +       ++P   T  + 
Sbjct: 509 CKEEDMAELAVITKRLDFHLEQVQDFTPTPMTVATE 544


>gi|124026643|ref|YP_001015758.1| Fe-S oxidoreductase [Prochlorococcus marinus str. NATL1A]
 gi|123961711|gb|ABM76494.1| Fe-S oxidoreductase [Prochlorococcus marinus str. NATL1A]
          Length = 537

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/301 (12%), Positives = 99/301 (32%), Gaps = 29/301 (9%)

Query: 79  KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVV-VGPQTYYRLP 137
           +++     I+       K   +  V++ G        ++ +  P   ++ +G        
Sbjct: 133 EIWRNQRLIKKGLKYAKKYKPNANVILGGGAVSVFYNQLKKSLPKGTIISLGEGELLIEK 192

Query: 138 ELLERARFGKRVVDTDYSVEDK------------------FERLSIVDGGYNRKRGVTAF 179
            + + +   +R      S  +K                   + +      Y         
Sbjct: 193 LIRDESITDERCFIVGESPREKLIHEKPNNIMKTACDYSYIQSIWPEFKWYLDGGDFYIG 252

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISR-SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK 238
           +  + GC   C +C+     G ++    +S+V+ E ++L + GV             RG 
Sbjct: 253 VQTKRGCPHNCCYCIYTVIEGKKVRINPVSEVIQEIKQLYNLGVRGFWFTDAQFIPSRGH 312

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRY-TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQS 297
             + +     D+L ++ + +GL  + +       ++ + L +        M Y  + + S
Sbjct: 313 IQNAK-----DILQAIYD-EGLRDIHWAAYIRADNLDEELAELMVRTG--MSYFEIGITS 364

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
           GS  +++ M   +      +  + +        +S ++      E  +  R T+    ++
Sbjct: 365 GSQELIRKMRMGYNLKTVLKNCELLAKAGFKAQVSVNYSFNVIDERPETIRQTVAYHREL 424

Query: 358 G 358
            
Sbjct: 425 E 425


>gi|157960842|ref|YP_001500876.1| putative radical SAM protein [Shewanella pealeana ATCC 700345]
 gi|157845842|gb|ABV86341.1| conserved hypothetical radical SAM protein [Shewanella pealeana
           ATCC 700345]
          Length = 309

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 42/197 (21%), Positives = 79/197 (40%), Gaps = 12/197 (6%)

Query: 188 KFCTFCVV---PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK 244
             CT+C V    +    E+S  + + + + R+ + +   +     Q   +   + L  ++
Sbjct: 43  GGCTYCNVASFSHEHKTELS--IQEQLAQGRERLPSKSSKYIAYFQAYTSTYDEYLVLKQ 100

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304
                +    S+I GL         P ++ + L+      D +  +L L +QS +D  LK
Sbjct: 101 KYDEAIQD--SDIVGLCVGTRPDCVPNEVLELLVGY--QNDGVDVWLELGLQSANDATLK 156

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
            +NR H    Y   +  IR+ +  I + +  I+G PGE  +D+  T+D V ++G      
Sbjct: 157 KINRGHDFAAYEDTV--IRARKLGIKVCTHLILGLPGEAHEDYLQTLDKVLRVGVDGMKI 214

Query: 365 FKYSPRLG-TPGSNMLE 380
                  G T       
Sbjct: 215 HPLHIVEGSTMAKAWRN 231


>gi|304382658|ref|ZP_07365152.1| possible coproporphyrinogen dehydrogenase [Prevotella marshii DSM
           16973]
 gi|304336283|gb|EFM02525.1| possible coproporphyrinogen dehydrogenase [Prevotella marshii DSM
           16973]
          Length = 381

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/145 (23%), Positives = 67/145 (46%), Gaps = 8/145 (5%)

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
            +P D++   + A  +L   +  + +  Q+  DR L+ ++RRHTA E  + ++R+R+   
Sbjct: 102 CNPDDVTPEWVSALRELS--VNRVSMGAQTFDDRRLRFLHRRHTAAEVFRAVERLRAADI 159

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ-----V 382
           +  I+ D + GFP ET +D+   +D    +      ++  +   GTP  ++ EQ     +
Sbjct: 160 N-HINIDLMFGFPDETREDWTEDIDRALALNIEHLSAYCLAYEEGTPLYHLREQGRVKEL 218

Query: 383 DENVKAERLLCLQKKLREQQVSFND 407
           DE V       L  ++        +
Sbjct: 219 DEEVSRSMYETLIDRMTAAGYEHYE 243


>gi|146337956|ref|YP_001203004.1| hypothetical protein BRADO0847 [Bradyrhizobium sp. ORS278]
 gi|146190762|emb|CAL74767.1| Conserved hypothetical protein; putative radical SAM domain
           [Bradyrhizobium sp. ORS278]
          Length = 679

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 59/325 (18%), Positives = 105/325 (32%), Gaps = 49/325 (15%)

Query: 92  NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVD 151
               +E GD+++ +  C      +E   R+  V          R   L++R       ++
Sbjct: 247 EGAAREKGDVVIRLPSCEQVEADKEAYARASRVLHRESNPGNARP--LVQRHGDRDLWLN 304

Query: 152 TDYSVEDKFERLSIVDGGYNRKRGVTA-------------FLTIQEGCDKFCTFCVVPYT 198
                    E  S+ D  Y R    +               +TI  GC   CTFC +   
Sbjct: 305 PPPIPLTMAEMDSVYDLPYARAPHPSYGDAKIPAWDMIKFSVTIMRGCFGGCTFCSITEH 364

Query: 199 RGIEI-SRSLSQVVDEARKLIDNGVCEITLL----GQNVNAWRGKGLDGE---------- 243
            G  I SRS   ++ E  ++ D       ++    G   N +R    D +          
Sbjct: 365 EGRIIQSRSEGSILQEIERIRDKTPGFTGVISDIGGPTANMYRMACKDPKVEAACRRPSC 424

Query: 244 ------------KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL--DVLMP 289
                             L   + E++G+ R+   +    D++        +L    +  
Sbjct: 425 VFPEICPNLNTSHDDLIRLYRKVREVQGVKRVMVASGVRYDLAVESPAYIKELVTHHVGG 484

Query: 290 YLHLPVQSGSDRILKSMNRRH--TAYEYRQIIDRIRS-VRPDIAISSDFIVGFPGETDDD 346
           YL +  +      L  M +    T + ++Q+ D   +       +   FI   PG +D+D
Sbjct: 485 YLKIAPEHTERGPLDKMMKPGIGTYHRFKQMFDAAAAQAGKKYYLIPYFIAAHPGTSDED 544

Query: 347 FRATMDLVDKIGY--AQAFSFKYSP 369
                  + K  Y   Q  +F  SP
Sbjct: 545 MMNLALWLKKNRYRADQVQTFLPSP 569


>gi|145635210|ref|ZP_01790914.1| lipoyl synthase [Haemophilus influenzae PittAA]
 gi|145267489|gb|EDK07489.1| lipoyl synthase [Haemophilus influenzae PittAA]
          Length = 320

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/214 (15%), Positives = 71/214 (33%), Gaps = 10/214 (4%)

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           + +    E  S  +       G   F+ +   C + C FC V    G  +     +    
Sbjct: 61  HGLHSVCEEASCPNLHECFNHGTATFMILGAICTRRCPFCDV--AHGKPLPPDPEEPQKL 118

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
           A  + D  +  + +   +    R    D     FS+ + ++ E+   +++       R  
Sbjct: 119 AETIQDMKLKYVVITSVD----RDDLPDRGAGHFSECVKAVRELNPNIKIEILVPDFRGR 174

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
               ++   D     P +         R+ K +          +++   + + P+I   S
Sbjct: 175 VTQALEKLKDNP---PDVFNHNLENVPRLYKEIRPGADYEWSLKLLREFKEMFPNIPTKS 231

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
             +VG  GET+++    M  +   G       +Y
Sbjct: 232 GLMVGL-GETNEEILQVMQDLRDNGVTMLTLGQY 264


>gi|145633417|ref|ZP_01789147.1| lipoyl synthase [Haemophilus influenzae 3655]
 gi|229845372|ref|ZP_04465503.1| lipoyl synthase [Haemophilus influenzae 6P18H1]
 gi|144985980|gb|EDJ92582.1| lipoyl synthase [Haemophilus influenzae 3655]
 gi|229811680|gb|EEP47378.1| lipoyl synthase [Haemophilus influenzae 6P18H1]
          Length = 320

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/214 (15%), Positives = 71/214 (33%), Gaps = 10/214 (4%)

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           + +    E  S  +       G   F+ +   C + C FC V    G  +     +    
Sbjct: 61  HGLHSVCEEASCPNLHECFNHGTATFMILGAICTRRCPFCDV--AHGKPLPPDPEEPQKL 118

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
           A  + D  +  + +   +    R    D     FS+ + ++ E+   +++       R  
Sbjct: 119 AETIQDMRLKYVVITSVD----RDDLPDRGAGHFSECVKAVRELNPNIKIEILVPDFRGR 174

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
               ++   D     P +         R+ K +          +++   + + P+I   S
Sbjct: 175 VTQALEKLKDNP---PDVFNHNLENVPRLYKEIRPGADYEWSLKLLREFKEMFPNIPTKS 231

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
             +VG  GET+++    M  +   G       +Y
Sbjct: 232 GLMVGL-GETNEEILQVMQDLRDNGVTMLTLGQY 264


>gi|312127785|ref|YP_003992659.1| Radical SAM domain-containing protein [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311777804|gb|ADQ07290.1| Radical SAM domain protein [Caldicellulosiruptor hydrothermalis
           108]
          Length = 341

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 43/235 (18%), Positives = 81/235 (34%), Gaps = 16/235 (6%)

Query: 173 KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV-VDEARKLIDNGVCEITLLGQN 231
           K  +      Q  C   C FC         IS    +V +D  ++ I+ G+  I      
Sbjct: 2   KHNILPIFIPQYACPFNCIFC-----NQKTISGEKEEVSLDRIKRQIEQGLK-INPNEDV 55

Query: 232 VNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL 291
             A+ G         F   L  L+     ++    ++ P  + +  ++     +  +  +
Sbjct: 56  ELAYYGGNFTAIDIDFQKKLLELANSFERIKSIRISTRPDCIDEERLRLLKLYN--VRTI 113

Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351
            L +QS  D +L +  R HTA   +  ++ I+       +    +VG P  T +    T 
Sbjct: 114 ELGIQSMFDDVLNACARGHTAQHSKNAMEMIKKF--GFLLGVQVMVGLPKSTPEKDIETA 171

Query: 352 DLVDKIGYAQAFSFKYSPRLGTPGSNM-----LEQVDENVKAERLLCLQKKLREQ 401
            ++       A  +      GT  + M      E +  N   ER   ++    E+
Sbjct: 172 KILTSFSPDIARIYPTLVIEGTYLAKMYRRGEYEPLSLNEAVERCSQIKSIFIEK 226


>gi|237709555|ref|ZP_04540036.1| Fe-S oxidoreductase family 2 protein [Bacteroides sp. 9_1_42FAA]
 gi|229456611|gb|EEO62332.1| Fe-S oxidoreductase family 2 protein [Bacteroides sp. 9_1_42FAA]
          Length = 545

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 51/312 (16%), Positives = 100/312 (32%), Gaps = 42/312 (13%)

Query: 45  EDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVV 104
             M   + Y     +  A   + N         E++     R++ L            +V
Sbjct: 45  AGMIVDEIYHHQPDILAATTWLFN--------HEQLIHVASRVKAL-------LPKTCLV 89

Query: 105 VAGCVAQAEGEEILRRSPIVNVVV----------------GPQTYYRLPELLERARFGKR 148
           + G     + EE LR++P V+ V                  P+ ++ +P L     + + 
Sbjct: 90  LGGPEFLGDNEEFLRKNPFVDCVFRGEGEEVFPQWLTCWNHPEQWHTVPGLCYLTPYKEY 149

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
             +    V +    +      +         L    GC   C FC V        + S+ 
Sbjct: 150 KDNGIARVLNFAGLVPPEQSRFFNWSKPFVQLETTRGCFNTCAFC-VSGGEKPVRTLSIE 208

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
            +    + +  +G+  + +L +  N               +LL    E    +R      
Sbjct: 209 SIRRRLQLIHAHGIKNVRVLDRTFNY--------NPRRAKELLRLFLEFHPDIRFHLE-I 259

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
           HP  +S+ L +    L   + +L   +QS  + +L+   R     +    + R     P+
Sbjct: 260 HPALLSEELKEELSLLPKGLLHLEAGIQSLREPVLEKSRRMGKLSDALDGL-RFLCALPN 318

Query: 329 IAISSDFIVGFP 340
           +   +D I G P
Sbjct: 319 METHADLIAGLP 330


>gi|311895980|dbj|BAJ28388.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Kitasatospora setae KM-6054]
          Length = 409

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 79/220 (35%), Gaps = 14/220 (6%)

Query: 186 CDKFCTFCVV-PYTRGIEISRSLSQVVDEARKLIDNGVCEIT-LLGQNVNAWRGKGLDGE 243
           C   C +C    YT     S       +     +   + +   +LG+         L G 
Sbjct: 39  CASRCGYCDFNTYTATELRSSGAVASQETYADNVIAEIRQARRVLGEVDLPVETVFLGGG 98

Query: 244 KCTF---SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKA--HGDLDVL-MPYLHLPVQS 297
             T     DL+  L+ ++    L        + +   +      +L       +   +QS
Sbjct: 99  TPTLLPARDLVRMLAALREEFGLAPGAEVTTEANPESVDPAYLAELREGGYNRISFGMQS 158

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
               +L  ++R HT       +   R+      ++ D I G PGE+D D++ ++D     
Sbjct: 159 ARPHVLALLDRHHTPGRPEACVAEARAA-GFAHVNLDLIYGTPGESDQDWQVSLDAAIGA 217

Query: 358 GYAQAFSFKYSPRLGTPGSNMLEQ-----VDENVKAERLL 392
           G     ++      GT  +  +++     +D++V A+R L
Sbjct: 218 GPDHVSAYSLIVEDGTRLAARVKRGELPMIDDDVHADRYL 257


>gi|194477010|ref|YP_002049189.1| hypothetical protein PCC_0548 [Paulinella chromatophora]
 gi|171192017|gb|ACB42979.1| hypothetical protein PCC_0548 [Paulinella chromatophora]
          Length = 532

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 49/307 (15%), Positives = 92/307 (29%), Gaps = 41/307 (13%)

Query: 79  KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPE 138
           +++  L  IR              VV+ G       E++ +  P   ++    +     +
Sbjct: 128 ELWRNLRLIRRGLQQAQIYQFGARVVLGGGAVSVFYEQLSKGLPEGTII----SVGEGEQ 183

Query: 139 LLERARFG---------------------KRVVDTDYSVEDKFERLSIVD--GGYNRKRG 175
           LLE+   G                     ++ +    +  D     SI      Y     
Sbjct: 184 LLEKLLKGYSLENERCFIVGEPPRSGLIHEQPIGNIKTACDYQYISSIWPQFNWYLESND 243

Query: 176 VTAFLTIQEGCDKFCTFCVVPYTRGIEISR-SLSQVVDEARKLIDNGVCEITLLGQNVNA 234
               +  + GC   C +C+     G ++    + +VV E R+L D GV            
Sbjct: 244 FYIGVQTKRGCPHNCCYCIYTVVEGKQVRLNPVEEVVAEMRQLYDRGVRGFWFTDAQFIP 303

Query: 235 WRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY-TTSHPRDMSDCLIKAHGDLDVLMPYLHL 293
            R    D +      LL S+S  +GL  + +       ++   L          M Y  +
Sbjct: 304 ARRYIADAK-----ALLRSISA-EGLTDIHWAAYIRADNLDAELADLMVSTG--MSYFEI 355

Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPG--ETDDDFRATM 351
            + SGS  +++ M   +           +   R            F    E  +  R T+
Sbjct: 356 GITSGSQELVRKMRMGYNLRNVLDSCWLL--ARAGFQDHVSVNYSFNVIDERPETIRQTI 413

Query: 352 DLVDKIG 358
               ++ 
Sbjct: 414 AYHRELE 420


>gi|194335661|ref|YP_002017455.1| Radical SAM domain protein [Pelodictyon phaeoclathratiforme BU-1]
 gi|194308138|gb|ACF42838.1| Radical SAM domain protein [Pelodictyon phaeoclathratiforme BU-1]
          Length = 609

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 70/391 (17%), Positives = 125/391 (31%), Gaps = 75/391 (19%)

Query: 10  VAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDS--LRMEDMFFSQGYERVNSMDDADLIVL 67
           +A  V   V+  ++P  ++           D     +  +   Q           DL+ +
Sbjct: 33  LAAAVEHDVESLVMPDNYY----------NDGIFESLRTLLKKQ---------PVDLVAI 73

Query: 68  NTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVV 127
           ++                +   L     + G    VV+ G    A  EE+L +   V+VV
Sbjct: 74  SSMT----------GAFNQAARLAKIAKEAG--AFVVMGGFHPTALPEEVL-KLSCVDVV 120

Query: 128 VGPQTYYRLPELLER----------ARFGKRVVDTDYSVED------KFERLSIVDGGYN 171
           V  +      EL+ +           R G  ++ T+           +F   ++    Y 
Sbjct: 121 VIGEGEESFRELVLKGPSRDIRGIAYRGGGGIIYTEPRTTIADVDSIRFPLRTLRPNRYG 180

Query: 172 RKRGVTAFLTI--QEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLG 229
            K    +  TI    GC   C+FC           RS   VV+E   L D    ++  + 
Sbjct: 181 EKGDAYSIDTIYTSRGCPWSCSFCANDQMHKGWRGRSAENVVEEIALLHDPKNKKLLKI- 239

Query: 230 QNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMP 289
                      D    T       + ++     L          +  L++A   L  L  
Sbjct: 240 ----------WDANFLTNIKRAERICDLMIERGLTNFRIVTETRAKDLVRAERILGKLRR 289

Query: 290 ----YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDD 345
                + L ++S ++  L  MN++++  +  + I   R     I     FI+G   E   
Sbjct: 290 VGLSKVGLGIESPNEATLALMNKKNSLNDVARAIALCRE--HSIGAEGYFIIGHYTEN-- 345

Query: 346 DFRATM---DLVDKIGYAQAFSFKYSPRLGT 373
             + TM   +    +G  QA     +P  GT
Sbjct: 346 -MKETMVYPEFARSLGLRQALFMVMTPYPGT 375


>gi|326773566|ref|ZP_08232849.1| oxygen-independent coproporphyrinogen III oxidase [Actinomyces
           viscosus C505]
 gi|326636796|gb|EGE37699.1| oxygen-independent coproporphyrinogen III oxidase [Actinomyces
           viscosus C505]
          Length = 415

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 72/220 (32%), Gaps = 18/220 (8%)

Query: 173 KRGVTAFLTIQEGCDKFCTFC----VVPYTRGIEISRSLSQVVDEARKLIDNGVCEI--- 225
           +R  + +L +   C   C +C        T G   S      V      +      +   
Sbjct: 17  ERPFSVYLHVPY-CRVRCGYCDFNTYTNLTMGQGAS--AEDFVGTLAGELRAARRAMDSA 73

Query: 226 ---TLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHG 282
                  Q V    G            +L  + E  GL      T+     S        
Sbjct: 74  GLPVRAAQTVFVGGGTPTMLPATDLVSMLELVRECFGLAADAEVTTEANPDSVDEAGLEA 133

Query: 283 DLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGE 342
             +     +   +QS    +LK + R H      ++++  R     ++ S D I G PGE
Sbjct: 134 LAEGGFTRVSFGMQSAVPHVLKVLERTHEPVRVPRVVEWARRA--GLSTSLDLIYGAPGE 191

Query: 343 TDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           + +D++ ++D V +IG     ++      GT    M  QV
Sbjct: 192 SLEDWQRSLDAVTRIGPDHVSAYALVIEEGT---RMWGQV 228


>gi|322421051|ref|YP_004200274.1| Radical SAM domain-containing protein [Geobacter sp. M18]
 gi|320127438|gb|ADW14998.1| Radical SAM domain protein [Geobacter sp. M18]
          Length = 501

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 50/326 (15%), Positives = 100/326 (30%), Gaps = 35/326 (10%)

Query: 57  NSMDDADLIVLNTCHI-REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGE 115
           + +  AD + +    + R+ A E     L R  +L    +  G     +   C       
Sbjct: 61  HDLRWADYVFIGAMTVQRDSARE----VLARCLSLGVKTVGGGP----LFTTC------- 105

Query: 116 EILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRG 175
                 P +N +V  +    LP  LE                    R  +   G    R 
Sbjct: 106 --QDEFPELNHLVLGEAEVTLPRFLEDLEKQTPQRLYLPDGRPDLSRTPLPRWGLIDMRK 163

Query: 176 VTAF-LTIQEGCDKFCTFCVVPYTRG-IEISRSLSQVVDEARKLIDNGVCEITLLGQNVN 233
             +  +    GC   C FC +    G    +++  QV+ E   L   G         +  
Sbjct: 164 YASMNIQFSRGCPFDCEFCDITQLFGHKPRTKTSEQVLAELESLYSRGWRGGVFFVDD-- 221

Query: 234 AWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM----SDCLIKAHGDLDVLMP 289
                 +  ++    +LL ++     + R  +       +       L++    +     
Sbjct: 222 ----NFIGDKRRLKKELLPAMIAWMKVHRHPFFFYTEVSINLADDPQLMELM--VAAGFQ 275

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV-RPDIAISSDFIVGFPGETDDDFR 348
            + + ++S  +  LK   +       R ++  ++ + R  + +   FIVGF  +    F 
Sbjct: 276 EVFIGIESPEEDSLKETGK--VQNHNRDLVASVKCIQRAGLQVQGGFIVGFDSDGPSIFD 333

Query: 349 ATMDLVDKIGYAQAFSFKYSPRLGTP 374
             +  + + G   A         GT 
Sbjct: 334 KQLRFIQESGVVTAMVGILMVLRGTK 359


>gi|11596398|gb|AAG38602.1|AF317284_2 lipoate synthetase [Burkholderia pseudomallei]
          Length = 288

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 77/221 (34%), Gaps = 10/221 (4%)

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
           + +  ++++    E  S  + G    +G   F+ + + C + C FC V + R   +    
Sbjct: 20  KTILREHNLHTVCEEASCPNIGECFGKGTATFMIMGDKCTRRCPFCDVGHGRPDPLDADE 79

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
            + +      +   +  + +   +    R    DG    F + +  + E     R+   T
Sbjct: 80  PKNLARTIAALKLKLKYVVITSVD----RDDLRDGGAGHFVECIREVREQSPATRIEILT 135

Query: 268 SHPRD-MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
              R  +   L   +     +M +    V     R+ K            +++   +++ 
Sbjct: 136 PDFRGRLDRALAILNAAPPDVMNHWLETV----PRLYKEARTGSDYAHSLKLLKDFKALH 191

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           PD+A  S  +VG  GET D+    M  +           +Y
Sbjct: 192 PDVATKSGLMVGL-GETTDEILQVMRDLRAHDVDMLTIGQY 231


>gi|158522638|ref|YP_001530508.1| radical SAM domain-containing protein [Desulfococcus oleovorans
           Hxd3]
 gi|158511464|gb|ABW68431.1| Radical SAM domain protein [Desulfococcus oleovorans Hxd3]
          Length = 537

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 60/339 (17%), Positives = 107/339 (31%), Gaps = 53/339 (15%)

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTY------YRLPELL 140
              L     +    L V+  G       E  L  +  V V  G          +R  + +
Sbjct: 79  AAALTGRLKQAFPCLPVIWGGIHPTIAPEMCLDHADYVCVGEGEHAVAALARAFREEKTV 138

Query: 141 ERA------RFGKRVVDTDYSVEDKFERLSIVDG----------------------GYNR 172
           E        R GK V +    V    + L   +                        Y R
Sbjct: 139 EHISNICYRRQGKIVRNPLEPVIQNLDSLPTCEHLPRGSYIAHRGSIVSLDHHQLKRYGR 198

Query: 173 KRGVTAFLTIQEGCDKFCTFCVVPYTR-----GIEISRSLSQVVDEARKLIDNGVCEITL 227
            RG         GC   C +C   +            RS++ ++ E  + + +      +
Sbjct: 199 WRGTIYSTMSSRGCPFACAYCCNDFLSRLYDTRKIRRRSVASLMPELSRAVADHPEIQYI 258

Query: 228 LGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL 287
             Q+           E   F        +I     +R   +         +KA G     
Sbjct: 259 NFQDDCFLACSDAYLE--AFCHAYRQ--KIGRPFIVRCIPAFVDAGRLKKLKAAG----- 309

Query: 288 MPYLHLPVQSGSDRILKSMNRRH-TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDD 346
           + ++ L +QSGSDR+L     RH T+ ++      +      IA   D I+  P E D+D
Sbjct: 310 LVWMSLGLQSGSDRVLSDAYNRHSTSEQFLAAARLVHEA--GIAAYYDVILDNPLENDED 367

Query: 347 FRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
              T++++      + +  +       PGS++ E++  +
Sbjct: 368 RYKTIEVLTAAP--RPYFLQLFALTLYPGSSLYERITAD 404


>gi|299771916|ref|YP_003733942.1| hypothetical protein AOLE_18435 [Acinetobacter sp. DR1]
 gi|298702004|gb|ADI92569.1| hypothetical protein AOLE_18435 [Acinetobacter sp. DR1]
          Length = 793

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 57/297 (19%), Positives = 98/297 (32%), Gaps = 50/297 (16%)

Query: 151 DTDYSVEDKFERLSIV---DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRS 206
           + DY  +  + RL      D  +     +   + I  GC   CTFC +    G  I +RS
Sbjct: 386 EMDYVFDLPYARLPHPTYGDARFPAFDMIKFSVNIMRGCFGGCTFCSITEHEGRIIQNRS 445

Query: 207 LSQVVDEARKLIDNGVCEITLLGQ------NVNAWRGKGLDGEK---------------- 244
              ++ E  K+ D       ++        N+     K  + EK                
Sbjct: 446 EDSILREIEKIRDTAPNFTGIISDLGGPTANMYRLHCKDPEIEKNCRKPSCVYPGVCQNL 505

Query: 245 ----CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL--DVLMPYLHLPVQSG 298
                    L      IKG+ ++   +    D++    +   +L    +  YL +  +  
Sbjct: 506 HTDHAPLVQLYRKARAIKGVKKILIGSGLRYDLAVLNPEYVKELVQHHVGGYLKIAPEHT 565

Query: 299 SDRILKSMNRR--HTAYEYRQIIDRI-RSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
            +  L  M +    T   ++Q+ DR  +    +  +   FI   PG +D D       + 
Sbjct: 566 ENGPLSKMMKPGIGTYDRFKQMFDRFSKEAGKEQYLIPYFIAAHPGTSDYDMMHLAIWLK 625

Query: 356 KIGY--AQAFSFKYSPR------------LGTPGSNMLEQVDENVKAERLLCLQKKL 398
           K G+   Q  +F  SP                  +   E+VD  VK E+   L K  
Sbjct: 626 KNGFRADQVQTFYPSPMATATTMYYSGKNPLAKVARYTEKVDI-VKGEKRRRLHKAF 681


>gi|297616327|ref|YP_003701486.1| radical SAM protein [Syntrophothermus lipocalidus DSM 12680]
 gi|297144164|gb|ADI00921.1| Radical SAM domain protein [Syntrophothermus lipocalidus DSM 12680]
          Length = 358

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/205 (15%), Positives = 72/205 (35%), Gaps = 20/205 (9%)

Query: 175 GVTAFLTIQEGCDKFCTFCVVPYTRGIEISR---SLSQVVDEARKLIDNGVCEITLLGQN 231
            +   +     C + C +C +       +SR    + ++++ A++ +  G   I L    
Sbjct: 54  HLRGIIEFSNYCSRACLYCGISR-HNRHLSRYRMDVEEILEAAKEAVGMGFKTIVLQS-- 110

Query: 232 VNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL 291
                G+       T + L+  +  +   V L       R+      +A  D        
Sbjct: 111 -----GEDPFYSTSTITRLVSQIKAMDVAVTLSVG-ERRREDYAAWKEAGADR------Y 158

Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351
            L  ++    + + +    +  +  Q +  ++ +  D  + S  +VG PG+T       +
Sbjct: 159 LLKFETSDPDLYRRLRPGCSMAQRLQCLTYLKDL--DYEVGSGIMVGLPGQTLSSMADDI 216

Query: 352 DLVDKIGYAQAFSFKYSPRLGTPGS 376
            L+ K+  +      + P   TP +
Sbjct: 217 LLMRKLQLSMVGIGPFIPHPATPLA 241


>gi|332879416|ref|ZP_08447112.1| uncharacterized radical SAM protein YgiQ [Capnocytophaga sp. oral
           taxon 329 str. F0087]
 gi|332682606|gb|EGJ55507.1| uncharacterized radical SAM protein YgiQ [Capnocytophaga sp. oral
           taxon 329 str. F0087]
          Length = 714

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 46/271 (16%), Positives = 95/271 (35%), Gaps = 44/271 (16%)

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAF---LTIQEGCDKFCTFCVVPYTRGIE-ISRS 206
           + D+S +  + RL        R          + +  GC   C FC +   +G   ++RS
Sbjct: 302 EIDHSFDLPYTRLPHPKYKGKRIPAYEMIKFSVNLHRGCFGGCAFCTISAHQGKFIVNRS 361

Query: 207 LSQVVDEARKLIDNGVCEITLL---GQNVNAWRGKG----------------------LD 241
              ++ E R++ +    +  L    G + N +  KG                      L+
Sbjct: 362 KESILKEVRQITEMPDFKGNLSDLGGPSANMYGMKGKNLKACERCKRPSCIHPEICPNLN 421

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTT--------SHPRDMSDCLIKAHGDLDVLMPYLH- 292
            +     D+ +++  + G+ R    +           +D     + A    +++  ++  
Sbjct: 422 TDHTALLDIYHAVDALPGIKRSYIGSGVRYDLLLHDAKDARINQVNAEYTRELITRHVSG 481

Query: 293 ---LPVQSGSDRILKSMNRRHTAYE--YRQIIDRI-RSVRPDIAISSDFIVGFPGETDDD 346
              +  +  SDR+L+ M +        ++ I DRI R       I   FI   PG T++D
Sbjct: 482 RLKVAPEHTSDRVLELMRKPSFRQFGEFKDIFDRINRESGLRQQIIPYFISSHPGCTEED 541

Query: 347 FRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
                 L  ++ +       ++P   T  + 
Sbjct: 542 MAELAVLTKRMDFQLEQVQDFTPTPMTVSTE 572


>gi|329123120|ref|ZP_08251690.1| lipoyl synthase [Haemophilus aegyptius ATCC 11116]
 gi|327471675|gb|EGF17117.1| lipoyl synthase [Haemophilus aegyptius ATCC 11116]
          Length = 320

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 34/235 (14%), Positives = 78/235 (33%), Gaps = 12/235 (5%)

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           + +    E  S  +       G   F+ +   C + C FC V    G  +     +    
Sbjct: 61  HGLHSVCEEASCPNLHECFNHGTATFMILGAICTRRCPFCDV--AHGKPLPPDPEEPQKL 118

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
           A  + D  +  + +   +    R    D     F++ + ++ E+   +++       R  
Sbjct: 119 AETIQDMKLKYVVITSVD----RDDLPDRGAGHFAECVKAVRELNPNIKIEILVPDFRGR 174

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
               ++   D     P +         R+ K +          +++   + + P+I   S
Sbjct: 175 ITQALEKLKDNP---PDVFNHNLENVPRLYKEIRPGADYEWSLKLLREFKEMFPNIPTKS 231

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP--RLGTPGSNMLEQVDENV 386
             +VG  GET+++    M  +   G       +Y    R   P +  +   + ++
Sbjct: 232 GLMVGL-GETNEEILQVMQDLRDNGVTMLTLGQYLQPSRHHLPVARYVPPTEFDI 285


>gi|225568636|ref|ZP_03777661.1| hypothetical protein CLOHYLEM_04714 [Clostridium hylemonae DSM
           15053]
 gi|225162564|gb|EEG75183.1| hypothetical protein CLOHYLEM_04714 [Clostridium hylemonae DSM
           15053]
          Length = 488

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 50/289 (17%), Positives = 89/289 (30%), Gaps = 42/289 (14%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQ-----NVNAWRGKGL 240
           C   CT+C          S +L    D     +D  + E+  +G+      +N     G 
Sbjct: 159 CPSVCTYCSFS-------SGALEAWKDRVEDYLDALMKELAYIGKVSAGKKLNTVYIGGG 211

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY----LHLPVQ 296
                T   L   L  I       +   +  +           L VL  +    + +  Q
Sbjct: 212 TPTTLTACQLERLLDCIDSNFSREHLLEYTVEAGRPDSITKEKLSVLYRHRITRISINPQ 271

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
           S   + L  + RRHT  +  +     R    D  I+ D I G PGE+  D R T+   + 
Sbjct: 272 SMQQKTLDLIGRRHTVEDIVRTYALARETGFD-NINMDLIAGLPGESAADMRDTLRQAEA 330

Query: 357 IGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEV 416
           +                  + M                Q++     V   +   G + +V
Sbjct: 331 LAPDSLTVHS---LAIKRAAQMG---------------QEQSARGYVEALERDTGTMAQV 372

Query: 417 LIE--KHGKEKGKLVGRSPW--LQSVVLNSKNHNIGDIIKVRITDVKIS 461
           + E  +   E  + +G  P+   +   +     N+G     ++    I 
Sbjct: 373 MTEMIRAAAESARRMGLLPYYLYRQKNIAGNFENVG---YAKVDKAGIY 418


>gi|86145689|ref|ZP_01064019.1| lipoyl synthase [Vibrio sp. MED222]
 gi|218708728|ref|YP_002416349.1| lipoyl synthase [Vibrio splendidus LGP32]
 gi|254809205|sp|B7VKE6|LIPA_VIBSL RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|85836660|gb|EAQ54786.1| lipoyl synthase [Vibrio sp. MED222]
 gi|218321747|emb|CAV17702.1| Lipoyl synthase [Vibrio splendidus LGP32]
          Length = 321

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 29/182 (15%), Positives = 61/182 (33%), Gaps = 10/182 (5%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V    G   +    +    A+ + D  +  + +   +    R    DG   
Sbjct: 94  CTRRCPFCDV--AHGRPNAPEAEEPKKLAKTIKDMKLKYVVITSVD----RDDLRDGGAQ 147

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
            F+D    + E    +R+       R   D  ++   D     P +       + R+ + 
Sbjct: 148 HFADCNREIREQNPNIRIETLVPDFRGRMDVALELMKDNP---PDVFNHNLETAPRLYRK 204

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
                       ++ + +   P+I   S  ++G  GET ++    +  + + G       
Sbjct: 205 ARPGANYKWSLDLLRKFKEQHPNIPTKSGVMMGL-GETKEEIVQVLKDLREHGVTMLTLG 263

Query: 366 KY 367
           +Y
Sbjct: 264 QY 265


>gi|156973248|ref|YP_001444155.1| Fe-S oxidoreductase [Vibrio harveyi ATCC BAA-1116]
 gi|156524842|gb|ABU69928.1| hypothetical protein VIBHAR_00929 [Vibrio harveyi ATCC BAA-1116]
          Length = 314

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 48/232 (20%), Positives = 81/232 (34%), Gaps = 23/232 (9%)

Query: 181 TIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL 240
           TI  G    CTFC V      E+   +  + D+ +            L            
Sbjct: 39  TIGRG---GCTFCNVASFADEEV--QIKSIQDQLKDRAGEIHRAKKYLA---YFQAYTST 90

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV--LMPYLHLPVQSG 298
             E     ++     +   +V L    + P  + D ++    D        +L L +Q+ 
Sbjct: 91  YAEVQVLKNMYEEALKAADIVGL-CVGTRPDCVPDAVLDLLSDYVNQGYEIWLELGLQTA 149

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           ++  LK +NR H    Y +I  R R++   I + +  IVG P ET DD   T+  V ++G
Sbjct: 150 NNDTLKRINRGHDFECYAEITKRARAL--GIKVCTHLIVGLPKETRDDNVETLRKVLEVG 207

Query: 359 YAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACV 410
                        G+  +          KA R   L+    E+ V+     +
Sbjct: 208 TDGIKLHGLHIVEGSTMA----------KAWRAGKLEAPELEEYVAIASEMI 249


>gi|332704495|ref|ZP_08424583.1| Radical SAM domain protein [Desulfovibrio africanus str. Walvis
           Bay]
 gi|332554644|gb|EGJ51688.1| Radical SAM domain protein [Desulfovibrio africanus str. Walvis
           Bay]
          Length = 557

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/179 (17%), Positives = 62/179 (34%), Gaps = 17/179 (9%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
           L +  GC   C FC   +         L  +    +        ++ L+G  +  W    
Sbjct: 225 LEVNRGCPYGCRFCAAGFIYRPPRHAELEDLKTIVQ---AANPPKVGLVGTALTDW---- 277

Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
                    D L  L E     +   ++     ++   +K        +  + L +++ S
Sbjct: 278 -----PQLMDFLSWLKERG--TKFSLSSIRADGVTPDFLKFLRHSG--LRTITLALEAPS 328

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
            R+ K+ N+R    ++   +        +  +    IVG+PGETD+D+      +  I 
Sbjct: 329 RRLRKAANKRLREEDFLNAVRLCSEYTVN-HLKIYCIVGWPGETDEDYEELGRFLVDIQ 386


>gi|310765932|gb|ADP10882.1| coproporphyrinogen III oxidase [Erwinia sp. Ejp617]
          Length = 457

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 42/236 (17%), Positives = 84/236 (35%), Gaps = 21/236 (8%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC        +++R   +  D    L+        L  Q   +    G  G   
Sbjct: 62  CHRLCYFC----GCNKQVTRQQHKADDYLAALMLEIAARARLFQQRTVSQMHWG--GGTP 115

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL-------MPYLHLPVQSG 298
           TF      +  +   +R  +  S   ++S  +     +LDVL          L + VQ  
Sbjct: 116 TF-LNKEQIRRLMACLRQHFHFSDTAEISIEVDPREIELDVLDHLRAEGFNRLSMGVQDF 174

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           + ++ + +NR         ++ R R +   I+ + D I G P +T + F  T+  V ++ 
Sbjct: 175 NKQVQEKVNRVQDEETIFALVARARQL-GFISTNIDLIYGLPAQTPESFAFTLQKVVELN 233

Query: 359 YAQAFSFKYSPRLGTPGSN---MLEQVDENVKAERLLCLQKKLREQQVSFNDACVG 411
             +   F Y+       +       ++ +    ++L  LQ+ +           +G
Sbjct: 234 PDRLSVFNYAHMPALFAAQRKIREAELPDA--QQKLAILQQTIATLTAQDYQ-FIG 286


>gi|268611138|ref|ZP_06144865.1| coproporphyrinogen III oxidase [Ruminococcus flavefaciens FD-1]
          Length = 498

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 48/312 (15%), Positives = 107/312 (34%), Gaps = 48/312 (15%)

Query: 124 VNVVVGPQTYYRLPELLERARFGKRVVDTD---YSVEDKFERLSIVDGGYNRKRGVTAFL 180
           V  V+       + E +  A   K +V  +    + E    +L I+D    +   +   +
Sbjct: 119 VKKVIDLMRRGMMEEEICSALGEKYLVSPEKLKIAYETAVNQLPILDRIDRKAVSLYVSI 178

Query: 181 TIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQ-------NVN 233
                C   C++C         +S S+   +      I+    E+ ++G         ++
Sbjct: 179 PF---CPTRCSYCS-------FVSHSMDSAIKLMPDYINALCRELKIIGDLVKETDTKID 228

Query: 234 AWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD------MSDCLIKAHGDLDVL 287
                G      +  DL   +  ++    L     +  +      +++  ++   +    
Sbjct: 229 TIYFGGGTPTSISADDLRMIMQTVQDNFDLDNVREYSVEAGRPDTITEEKLRVIKEYG-- 286

Query: 288 MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDF 347
              + +  Q+ +D +LK + R+H+  +  +  +  R V  D  I++D I G P E  D F
Sbjct: 287 ADRISVNPQTLNDDVLKVIGRKHSGEDALRAFELARKVGFD-NINTDLIAGLPTEQFDSF 345

Query: 348 RATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFND 407
           R T+D + ++          +                    +R   L +K  E   +   
Sbjct: 346 RNTLDKMIELSPESITVHTLTI-------------------KRSATLFEKGSENAANPAA 386

Query: 408 ACVGQIIEVLIE 419
             V   ++ L++
Sbjct: 387 EMVRYSVDALMD 398


>gi|242373888|ref|ZP_04819462.1| coproporphyrinogen dehydrogenase [Staphylococcus epidermidis
           M23864:W1]
 gi|242348442|gb|EES40044.1| coproporphyrinogen dehydrogenase [Staphylococcus epidermidis
           M23864:W1]
          Length = 382

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 42/240 (17%), Positives = 95/240 (39%), Gaps = 20/240 (8%)

Query: 176 VTAFLTIQEGCDKFCTFCVV-PYTRGIEISRSLSQVVDE-ARKLIDNGVCEITLLGQNVN 233
            +A++ I   C + CT+C    Y    +    + + +D   +++  N   ++    Q + 
Sbjct: 12  TSAYIHIPF-CVRICTYCDFNKYFIDKQ---PVDEYLDALIKEMQVNNNRQL----QTMY 63

Query: 234 AWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHL 293
              G            LL +++    +       ++P +++   +         +  + +
Sbjct: 64  VGGGTPTALNLTQLEKLLKAINNTFTISGEYSFEANPDELTYEKVALLKRYG--VNRISM 121

Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI-AISSDFIVGFPGETDDDFRATMD 352
            VQ+    +L+ + R H   +  + +D  R V   I +IS D +   P +T DDF+ +++
Sbjct: 122 GVQTFKPELLEILGRTHKTEDIYKAVDNARKV--GIESISLDLMYHLPQQTLDDFKQSLE 179

Query: 353 LVDKIGYAQAFSFKYSPRLGTPGSNMLEQ-----VDENVKAERLLCLQKKLREQQVSFND 407
           L  K+      S+       T   NM  +      +E++ AE    L ++L +  +   +
Sbjct: 180 LALKMDIDHISSYGLILEPKTQFYNMYRKGHLKLPNEDLGAEMYQYLMQRLEQSNLKQYE 239


>gi|312793341|ref|YP_004026264.1| Radical SAM domain-containing protein [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312180481|gb|ADQ40651.1| Radical SAM domain protein [Caldicellulosiruptor kristjanssonii
           177R1B]
          Length = 341

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 37/210 (17%), Positives = 73/210 (34%), Gaps = 11/210 (5%)

Query: 173 KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV-VDEARKLIDNGVCEITLLGQN 231
           K  +      Q  C   C FC         IS    +V  D  ++ I+ G+         
Sbjct: 2   KHRILPIFIPQYACPFNCIFC-----NQKTISGEKEEVSFDRIKRQIEQGLKINPDEDVE 56

Query: 232 VNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL 291
           + A+ G         F   L  L+     ++    ++ P  + +  ++     +  +  +
Sbjct: 57  L-AYYGGNFTAIDIDFQKKLLELANSFERIKSIRISTRPDCIDEERLRLLKLYN--VKTI 113

Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351
            L +QS  D +L +  R HTA   +  ++ I+       +    +VG P  T +    T 
Sbjct: 114 ELGIQSMFDDVLNACARGHTAQHSKNAMEMIKKF--GFLLGVQVMVGLPKSTPEKDIETA 171

Query: 352 DLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
            ++       A  +      GT  + M ++
Sbjct: 172 KILTSFSPDIARIYPTLVIEGTYLAKMYQK 201


>gi|166366384|ref|YP_001658657.1| hypothetical protein MAE_36430 [Microcystis aeruginosa NIES-843]
 gi|166088757|dbj|BAG03465.1| hypothetical protein MAE_36430 [Microcystis aeruginosa NIES-843]
          Length = 521

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 45/307 (14%), Positives = 103/307 (33%), Gaps = 24/307 (7%)

Query: 54  ERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAE 113
           E  +  +  DL++++   I++K            + L    ++ G    V V G    + 
Sbjct: 58  ETASDWEWCDLVIISAMIIQKK----------DFQELIAKGLQLGK--KVAVGGPYPTSY 105

Query: 114 GEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRK 173
            E  + +    + ++  +    +P  L     G+       S +       I        
Sbjct: 106 PE--VAQKAGADYLILDEGELTIPLFLAALERGEPSGVFRASEKPDVTMTPIARYDLLDL 163

Query: 174 RGVTAF-LTIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVCEITLLGQN 231
               A  +    GC   C FC +    G +  +++  Q++ E   L   G      +  +
Sbjct: 164 DAYLAITVQFSRGCPFQCEFCDIINLYGRKPRTKTPEQMLAELETLYQLGWRRYIFVVDD 223

Query: 232 VNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL 291
                 +     K    +L+  + + +   +L    S        LI+       ++  +
Sbjct: 224 NFIGNKRNA---KVFLRELIPWMEQHQYPFKLITEASLNLAEDSELIELMVKAGFML--V 278

Query: 292 HLPVQSGSDRILKSMNR-RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
            + +++     L  +N+ ++T     +   +I  +   + I S FI+GF  E     +  
Sbjct: 279 FMGIETPDTDSLMGINKVQNTRQSLIESCHKITRM--GLQIMSGFIIGFDNEKPGAGQRI 336

Query: 351 MDLVDKI 357
            D + + 
Sbjct: 337 KDFIMEA 343


>gi|110803276|ref|YP_699317.1| coproporphyrinogen III oxidase [Clostridium perfringens SM101]
 gi|110683777|gb|ABG87147.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Clostridium perfringens SM101]
          Length = 377

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 35/235 (14%), Positives = 88/235 (37%), Gaps = 20/235 (8%)

Query: 186 CDKFCTFCVVPYTRGI--EISRSLSQVVDEA---RKLIDNGVCEITLLGQNVNAWRGKGL 240
           C + C +C  P            +  +  E    R+  +N       +G    +      
Sbjct: 13  CAQKCLYCDFPSFARKDHLRKAYIEALNKEIISLREKHNNLEINTIFIGGGTPSVLESDE 72

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTT-SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
                    LL  ++++     + Y+   +P ++++  ++        +  + + +Q+  
Sbjct: 73  ------LEYLLKEVAKLNMAKDIEYSMECNPGNLTEEKLEVMKKYG--VNRISMGLQAKQ 124

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
           D +LK + R H    +++     + V  +  I+ D + G P +  +++  T+  +  +  
Sbjct: 125 DNLLKGLGRIHNYKTFKENFLLAKKVGFN-NINVDLMFGLPNQKLNEWEETLREIISLEP 183

Query: 360 AQAFSFKYSPRLGTPGSNMLE----QVDENVKAERLLCLQKKLREQQVSFNDACV 410
           A   ++      GT   N+ E    ++    +  ++  L KK+ E+   FN   +
Sbjct: 184 AHISAYSLIIEEGTAFYNLYENNKLKLPTEEEERKMYHLAKKILEEN-GFNQYEI 237


>gi|269960266|ref|ZP_06174641.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269835073|gb|EEZ89157.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 314

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 43/199 (21%), Positives = 71/199 (35%), Gaps = 13/199 (6%)

Query: 181 TIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL 240
           TI  G    CTFC V      E+   +  + D+ +            L            
Sbjct: 39  TIGRG---GCTFCNVASFADEEV--QIKSIHDQLKDRAGEIHRAKKYLA---YFQAYTST 90

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV--LMPYLHLPVQSG 298
             E     ++     +   +V L    + P  + D ++    D        +L L +Q+ 
Sbjct: 91  YAEVQVLKNMYEEALKAADIVGL-CVGTRPDCVPDAVLDLLSDYVNQGYEIWLELGLQTA 149

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           ++  LK +NR H    Y +I  R R++   I + +  IVG P ET DD   TM  V ++G
Sbjct: 150 NNDTLKRINRGHDFECYAEITKRARAL--GIKVCTHLIVGLPKETRDDNIETMRKVLEVG 207

Query: 359 YAQAFSFKYSPRLGTPGSN 377
                        G+  + 
Sbjct: 208 TDGIKLHGLHIVEGSTMAK 226


>gi|51891621|ref|YP_074312.1| coproporphyrinogen III oxidase [Symbiobacterium thermophilum IAM
           14863]
 gi|51855310|dbj|BAD39468.1| coproporphyrinogen III oxidase [Symbiobacterium thermophilum IAM
           14863]
          Length = 416

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 39/217 (17%), Positives = 70/217 (32%), Gaps = 19/217 (8%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQV--VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
           C   C +C          S    Q   VD   + ++       + G+ V+     G    
Sbjct: 12  CLHKCGYC---DFNSHAGSDRAEQAHYVDALLREMELWATRPEVAGEQVSTVYVGGGTPT 68

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY-----LHLPVQSG 298
               ++L   L  ++   RL        + +   +   G+   L        L L VQ+ 
Sbjct: 69  LLEGAELARVLRGVREHFRLAPDAEVTVEGNPGTVDVEGEKLHLAVQAGATRLSLGVQAR 128

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
              +L+ + R H A +    +   R       ++ D + G PG+T  DFR T+     +G
Sbjct: 129 QRHLLERLGRIHDALQVEAAVKAARRA-GFANLNLDLMYGLPGQTPADFRETVSWALGLG 187

Query: 359 YAQAFSFKYSPRLGTP------GSNMLEQVDENVKAE 389
                ++      GTP         +   +      E
Sbjct: 188 PTHISAYSLIIEEGTPFYHAYLAGRL--HLPPEEAEE 222


>gi|313892708|ref|ZP_07826289.1| radical SAM protein, TIGR01212 family [Veillonella sp. oral taxon
           158 str. F0412]
 gi|313442639|gb|EFR61050.1| radical SAM protein, TIGR01212 family [Veillonella sp. oral taxon
           158 str. F0412]
          Length = 363

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 44/209 (21%), Positives = 75/209 (35%), Gaps = 15/209 (7%)

Query: 175 GVTAFLTIQEGCDKFCTFCVVPYTRGIE-ISR-SLSQVVDEARKLIDNG----VCEITLL 228
           G+  F     GC   CTFC      G   IS  +   + +   + + N       E+   
Sbjct: 5   GMIPFFIPHVGCPYVCTFCNQSRITGQSGISHLTPDYIKETITEYVGNKRNDKFWEVAFY 64

Query: 229 GQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLM 288
           G +  A             S++L     I G+ R         D +  L++++G     +
Sbjct: 65  GGSFTAIHTGLQHQLLAPASEMLKR-GIIDGI-RCSTRPDAVGDKAITLLQSYG-----V 117

Query: 289 PYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFR 348
             + L VQS +D IL    R HTA E  + + R++     + +    + G  GET +   
Sbjct: 118 KTVELGVQSMNDGILVDAKRGHTAQEVLEAVVRLKQR--GMTVGVQLLPGLKGETWESIL 175

Query: 349 ATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
            T   V K+       +       T  ++
Sbjct: 176 ETAIAVVKLQPDFVRIYPVLVIENTELAD 204


>gi|312898799|ref|ZP_07758187.1| radical SAM domain protein [Megasphaera micronuciformis F0359]
 gi|310619961|gb|EFQ03533.1| radical SAM domain protein [Megasphaera micronuciformis F0359]
          Length = 576

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 38/273 (13%), Positives = 94/273 (34%), Gaps = 28/273 (10%)

Query: 99  GDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG---KRVVDTDYS 155
               + + G       EE+L+    ++ +V  +    LP+L++    G    ++    + 
Sbjct: 84  PSCKIFLGGPEVSYTAEEVLKEHDYIDCIVQGEGEEVLPQLIQSWEQGIERPQLTGVLFR 143

Query: 156 VEDKFE--------------RLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
             +  E                      +++      +     GC   C +C+       
Sbjct: 144 NGNTLEGSKQLCEVADLNTLPFPYEGEDFSKLSHKIIYYESSRGCPFQCQYCL-SGMSQS 202

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
              R+   V+ E ++ I  GV ++  + +  N             +  LL+    +   +
Sbjct: 203 VRFRNTRTVISELKRFIAAGVKQVKFVDRTFNC--------NPEHYRTLLHFFVSVPEDI 254

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
                   P  ++D  ++           + + +QS  +R L ++ R +      +++  
Sbjct: 255 NFHLE-IEPGLLTDEDLEILKAAPPGRIQMEMGIQSTYERTLDAVRRVNDWPRIEKVMKT 313

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           +R  +  + +  D IVG P ET +  + + + +
Sbjct: 314 LRDYQ-SVHLHLDLIVGLPYETMEHLQQSFNEI 345


>gi|209518390|ref|ZP_03267214.1| Radical SAM domain protein [Burkholderia sp. H160]
 gi|209501209|gb|EEA01241.1| Radical SAM domain protein [Burkholderia sp. H160]
          Length = 511

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 67/355 (18%), Positives = 122/355 (34%), Gaps = 41/355 (11%)

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPI-VNVVVGPQTYYRLPELLERAR 144
            I +L  S         V V G  A     ++LR +   V+ V+  +    +  LL+ A 
Sbjct: 76  EIVDLAKSVKAMEPRTFVFVGGHSASFIAADLLRHAEGAVDCVLKGEGEASVAALLQAAA 135

Query: 145 FGKRVVDTDYSVEDKFERLSIVD-------------GGYNRKR-----GVTAFLTIQEGC 186
            G  ++    +V  K E                     + RK         A +    GC
Sbjct: 136 CGADLLQVPGAVTSKGEGPPPRFVEDLDAIRPARSLLHHRRKYFIGTLDPCASIEFARGC 195

Query: 187 DKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
              CTFC      G    SR    + +E   + + GV  +  +   V+A  G  +  E  
Sbjct: 196 PWDCTFCSAWTFYGRSYRSRRPEMIANELASIREPGVFIVDDVAF-VHAEHGMLIGEEVK 254

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
                     E +G V LR         +  + +   +L   + Y+ L +++  ++ LK+
Sbjct: 255 RRRIRKRYYLETRGDVLLR---------NKDVFRFWSELG--LEYMFLGMEAIDEKGLKA 303

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
             +R +  +  + ++  RS+   I ++ + I   P    D F        +I        
Sbjct: 304 FRKRISLDKNFEALEFARSL--GITVAINLIAD-PDWDRDRFETIRQWCLEIP-EIVNIS 359

Query: 366 KYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQV---SFNDACVGQIIEVL 417
             +P  GT    + E+        RL  +Q  +   ++    F    V +  +VL
Sbjct: 360 VNTPYPGTE-IWLQEERPLTSLDYRLYDIQHAVLPTRLPLAEFYAELV-RTQQVL 412


>gi|330507462|ref|YP_004383890.1| Radical SAM N-terminal domain-containing protein [Methanosaeta
           concilii GP-6]
 gi|328928270|gb|AEB68072.1| Radical SAM N-terminal domain protein [Methanosaeta concilii GP-6]
          Length = 601

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 57/335 (17%), Positives = 102/335 (30%), Gaps = 45/335 (13%)

Query: 87  IRNLKNSRIKEGGDLLVVVAGC---------VAQAEGEEILRRSPI-VNVVVGPQTYYRL 136
           ++       + G    V++ G           AQA       + P     VV P     +
Sbjct: 202 VKEEVRRWREAGRQDAVIIPGFAEVKGDKRKYAQAFAAHYKEQDPYHARAVVQPHPKTVV 261

Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
            +           +D  Y +    +              V   +T   GC   C+FC + 
Sbjct: 262 IQNPPALPLSTAELDQIYELPYSRKAHPSYREPIPALEPVRFSITSHRGCFGSCSFCALT 321

Query: 197 YTRGIEI-SRSLSQVVDEARKLIDN-GVC-EITLLGQNVNAWRG---------------- 237
           + +G  + SRS+S +V EA +L    G    I  +G       G                
Sbjct: 322 HHQGRIVQSRSISSIVREAERLAQMPGFKGIIQDVGGPTANMYGLVCPRWKQGACPDRLC 381

Query: 238 ----KGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMP---- 289
                 L+ +     +LL  L  I G+ R+   +    D+   +    G L+ L      
Sbjct: 382 SADCPTLEKDHSLQVELLRRLRAIPGVRRVFVGSGIRHDL--VMADRSGYLEDLCRHHVS 439

Query: 290 -YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA----ISSDFIVGFPGETD 344
            +L +  +  S  + + M++           +R R+          I    + G PG T 
Sbjct: 440 GHLKIAPEHISRTVTECMHKP-PRQVLDDFRERFRAASQAAGREQYILPYLMSGHPGCTI 498

Query: 345 DDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            D     + +            ++P   T  + M 
Sbjct: 499 ADMVELAEYLRDNSMYTEQVQDFTPTPMTISTAMY 533


>gi|319774978|ref|YP_004137466.1| Lipoic acid synthetase [Haemophilus influenzae F3047]
 gi|317449569|emb|CBY85774.1| Lipoic acid synthetase [Haemophilus influenzae F3047]
          Length = 320

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 34/235 (14%), Positives = 78/235 (33%), Gaps = 12/235 (5%)

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           + +    E  S  +       G   F+ +   C + C FC V    G  +     +    
Sbjct: 61  HGLHSVCEEASCPNLHECFNHGTATFMILGAICTRRCPFCDV--AHGKPLPPDPEEPQKL 118

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
           A  + D  +  + +   +    R    D     F++ + ++ E+   +++       R  
Sbjct: 119 AETIQDMKLKYVVITSVD----RDDLPDRGAGHFAECVKAVRELNPSIKIEILVPDFRGR 174

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
               ++   D     P +         R+ K +          +++   + + P+I   S
Sbjct: 175 ITQALEKLKDNP---PDVFNHNLENVPRLYKEIRPGADYEWSLKLLREFKEMFPNIPTKS 231

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP--RLGTPGSNMLEQVDENV 386
             +VG  GET+++    M  +   G       +Y    R   P +  +   + ++
Sbjct: 232 GLMVGL-GETNEEILQVMQDLRDNGVTMLTLGQYLQPSRHHLPVARYVPPTEFDI 285


>gi|302035941|ref|YP_003796263.1| radical SAM superfamily protein [Candidatus Nitrospira defluvii]
 gi|300604005|emb|CBK40337.1| Radical SAM superfamily protein [Candidatus Nitrospira defluvii]
          Length = 551

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/182 (14%), Positives = 54/182 (29%), Gaps = 14/182 (7%)

Query: 180 LTIQEGCDKFCTFCVVPYTRG-IEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRG 237
           +  + GC   C FC+ PY  G     R    VV +  +     G                
Sbjct: 228 VQTKRGCPYDCAFCLYPYIEGKRVRYRPPEMVVKDISQHYHQWGARRFWFTDAQFIT--- 284

Query: 238 KGLDGEKCTFSDLLYSLSEI--KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPV 295
                 K  +      L  I  + L            ++  L K        +  L + +
Sbjct: 285 -----GKEAYPQCTEILERIVREKLEIEWSGYIRTSLITPELAKLMVRSG--VGDLEVAI 337

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
            SGS  +L +++              +        +  ++ +  P ET++    +++   
Sbjct: 338 TSGSQDVLNNLHMGFKLERLYDGCRYLAEAGFKGKVILNYSLNSPKETEESLLQSVESYK 397

Query: 356 KI 357
           K+
Sbjct: 398 KV 399


>gi|300314048|ref|YP_003778140.1| lipoate synthase [Herbaspirillum seropedicae SmR1]
 gi|300076833|gb|ADJ66232.1| lipoate synthase protein [Herbaspirillum seropedicae SmR1]
          Length = 330

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 38/209 (18%), Positives = 74/209 (35%), Gaps = 14/209 (6%)

Query: 161 ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN 220
           E  S  + G    +G   F+ + + C + C FC V + R   +    ++  + A+ +   
Sbjct: 80  EEASCPNIGECFGKGTATFMIMGDKCTRRCPFCDVGHGRPDPL--DPNEPENLAKTIAQL 137

Query: 221 GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKA 280
            +  + +   +    R    DG    F+  +  + E+    R+   T   R   D  ++ 
Sbjct: 138 RLSYVVITSVD----RDDLRDGGAAHFAACIQRVRELSPETRIEILTPDFRGRMDRALEI 193

Query: 281 --HGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVG 338
                 DV+   L         R+ K             ++ R + + PD+   S  +VG
Sbjct: 194 LKMAPPDVMNHNLETA-----PRLYKEARPGSDYEYSLSLLKRFKDLHPDVPTKSGIMVG 248

Query: 339 FPGETDDDFRATMDLVDKIGYAQAFSFKY 367
             GETD++    M  +           +Y
Sbjct: 249 L-GETDEEVLQVMRDMRAHNVDMLTIGQY 276


>gi|163751959|ref|ZP_02159171.1| hypothetical protein KT99_01389 [Shewanella benthica KT99]
 gi|161328175|gb|EDP99341.1| hypothetical protein KT99_01389 [Shewanella benthica KT99]
          Length = 308

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 40/200 (20%), Positives = 76/200 (38%), Gaps = 16/200 (8%)

Query: 188 KFCTFCVV---PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK 244
             CT+C V    +  G E+S  + + +   R+       +     Q          D  +
Sbjct: 43  GGCTYCNVASFSFEHGTELS--IQEQLKLGRERAKGRSSKYIAYFQ----AYTSTYDEYR 96

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV--LMPYLHLPVQSGSDRI 302
              +    ++S+    +      + P  +SD +I          +  +L L +QS +D+ 
Sbjct: 97  VLKAKYDEAISDAD--IVGLCVGTRPDCVSDEVIDLLLSYQNQGIEVWLELGLQSANDKT 154

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           LK +NR HT  +YR  + R R+    + + +  I+G PGE+  D+ ++++ V   G    
Sbjct: 155 LKRINRGHTYNDYRDTVLRARAK--GLKVCTHLILGLPGESHQDYLSSLEAVLSTGVDGL 212

Query: 363 FSFKYSPRLG-TPGSNMLEQ 381
                    G T        
Sbjct: 213 KLHPLHIVEGSTMAKAWRND 232


>gi|110801024|ref|YP_696716.1| coproporphyrinogen III oxidase [Clostridium perfringens ATCC 13124]
 gi|110675671|gb|ABG84658.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Clostridium perfringens ATCC 13124]
          Length = 377

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 38/240 (15%), Positives = 93/240 (38%), Gaps = 14/240 (5%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C +C  P     +  R  + +    +++I+       L    +    G     E  
Sbjct: 13  CAQKCLYCDFPSFARKDHLRK-AYIEALNKEIINLREKHNNLEINTIFIGGGTPSVLESN 71

Query: 246 TFSDLLYSLSEIKGLVRLRYTT-SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304
               LL  ++++     + Y+   +P ++++  ++        +  + + +Q+  D +LK
Sbjct: 72  ELECLLKEIAKLNMAKDIEYSMECNPGNLTEEKLEVMKKYG--VNRISMGLQAKQDNLLK 129

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
            + R H    +++     + V  +  I+ D + G P +  +++  T+  +  +  A   +
Sbjct: 130 GLGRIHNYKTFKENFLLAKKVGFN-NINVDLMFGLPNQRLNEWEETLREIISLEPAHISA 188

Query: 365 FKYSPRLGTPGSNMLE----QVDENVKAERLLCLQKKLREQ----QVSF-NDACVGQIIE 415
           +      GT   N+ E    ++    +  ++  L KK+ E+    Q    N A  G+   
Sbjct: 189 YSLIIEEGTAFYNLYENDKLKLPTEEEERKMYHLAKKILEENGFNQYEISNYAKEGKECR 248


>gi|168204725|ref|ZP_02630730.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Clostridium perfringens E str. JGS1987]
 gi|170663535|gb|EDT16218.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Clostridium perfringens E str. JGS1987]
          Length = 377

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 37/245 (15%), Positives = 90/245 (36%), Gaps = 24/245 (9%)

Query: 186 CDKFCTFCVVPYTRGI--EISRSLSQVVDEA---RKLIDNGVCEITLLGQNVNAWRGKGL 240
           C + C +C  P            +  +  E    R+  +N       +G    +      
Sbjct: 13  CAQKCLYCDFPSFARKDHLRKAYIEALNKEIISLREKHNNLEINTIFIGGGTPSVLEADE 72

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTT-SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
                    LL  ++++     + Y+   +P ++++  ++        +  + + +Q+  
Sbjct: 73  ------LECLLKEVAKLNMAKDIEYSMECNPGNLTEEKLEVMKKYG--VNRISMGLQAKQ 124

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
           D +LK + R H    +++     + V  +  I+ D + G P +  +++  T+  +  +  
Sbjct: 125 DNLLKGLGRIHNYKTFKENFLLAKKVGFN-NINVDLMFGLPNQRLNEWEETLREIISLEP 183

Query: 360 AQAFSFKYSPRLGTPGSNMLE----QVDENVKAERLLCLQKKLREQ----QVSF-NDACV 410
           A   ++      GT   N+ E    ++    +  ++  L KK+ E+    Q    N A  
Sbjct: 184 AHISAYSLIIEEGTAFYNLYENDKLKLPTEEEERKMYHLAKKILEENGFNQYEISNYAKE 243

Query: 411 GQIIE 415
           G+   
Sbjct: 244 GKECR 248


>gi|114046555|ref|YP_737105.1| lipoyl synthase [Shewanella sp. MR-7]
 gi|123326777|sp|Q0HXV7|LIPA_SHESR RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|113887997|gb|ABI42048.1| lipoic acid synthetase [Shewanella sp. MR-7]
          Length = 321

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/184 (14%), Positives = 59/184 (32%), Gaps = 14/184 (7%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V    G  +     + V  A+ + D  +  + +   +    R    DG   
Sbjct: 94  CTRRCPFCDV--AHGRPLKPDADEPVKLAQTIRDMKLKYVVITSVD----RDDLRDGGAQ 147

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLD--VLMPYLHLPVQSGSDRIL 303
            F+D +  + ++   +++       R   D  +         V    L            
Sbjct: 148 HFADCIREIRKLNPEIKIEILVPDFRGRIDAALDILSTEPPDVFNHNLETAPMHY----- 202

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           +             ++ R +   P++   S  ++G  GET+++    +  + +       
Sbjct: 203 RKARPGANYQWSLDLLKRFKERHPNVPTKSGLMMGL-GETNEEIAQVLRDLREHKVEMLT 261

Query: 364 SFKY 367
             +Y
Sbjct: 262 LGQY 265


>gi|329896683|ref|ZP_08271676.1| hypothetical protein IMCC3088_2288 [gamma proteobacterium IMCC3088]
 gi|328921619|gb|EGG28995.1| hypothetical protein IMCC3088_2288 [gamma proteobacterium IMCC3088]
          Length = 675

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 39/236 (16%), Positives = 79/236 (33%), Gaps = 32/236 (13%)

Query: 176 VTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDNGVCEITLL----GQ 230
           +   + I  GC   CTFC +    G  I +RS   ++ E  ++ D       ++    G 
Sbjct: 335 IQHSVNIMRGCFGGCTFCSITEHEGRIIQNRSEESILKEIERIRDTSKTFTGVISDLGGP 394

Query: 231 NVNAWR----------------------GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
             N WR                       K L+ ++     L      I G+ ++   + 
Sbjct: 395 TANMWRLACKDPKIEASCRKLSCVFPGICKNLNTDQTPLIQLYRKARSIPGVKKVLIASG 454

Query: 269 HPRDMSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRR--HTAYEYRQIIDRI-R 323
              D++    +   +L    +  YL +  +      L +M +    T   ++++ D+  +
Sbjct: 455 LRYDIAVETPEYVEELVTHHVGGYLKIAPEHTEQGPLSAMMKPGIGTYDRFKKLFDKYSK 514

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
               +  +   FI   PG  D+D       + + G+       + P      + M 
Sbjct: 515 KAGKEQYLIPYFIAAHPGTEDEDMLNLALWLKRNGFRADQVQTFYPSPMATATAMY 570


>gi|258404588|ref|YP_003197330.1| oxygen-independent coproporphyrinogen III oxidase [Desulfohalobium
           retbaense DSM 5692]
 gi|257796815|gb|ACV67752.1| oxygen-independent coproporphyrinogen III oxidase [Desulfohalobium
           retbaense DSM 5692]
          Length = 391

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 39/197 (19%), Positives = 66/197 (33%), Gaps = 13/197 (6%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN----GVCEITLLGQNVNAWRGKGLD 241
           C   C +C      G   SR    +    R +       G        Q V    G    
Sbjct: 19  CRSKCAYCAFASGPG---SR--EDIAAWTRLVCAEARLWGRRLAKPELQTVYLGGGTPSL 73

Query: 242 GEKCTFSDLLYSLSEIKGLV-RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300
               +   L+++L         + +T     D       A    D+ +  +   VQS +D
Sbjct: 74  LPPESLHRLVHTLQSAFVWPQGIEWTLEANPDSFQDPAYAKSLYDLGVNRISFGVQSMAD 133

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIA-ISSDFIVGFPGETDDDFRATMDLVDKIGY 359
           R L  + R HTA +  + +   R     ++ IS D + G PG T   +  T++    +  
Sbjct: 134 RELDLLGRAHTAAQAVRAVTLAREA--GVSNISLDLLWGLPGHTLTQWEHTLEQALALKP 191

Query: 360 AQAFSFKYSPRLGTPGS 376
                +  +P   TP +
Sbjct: 192 RHLSCYGLTPEPDTPLA 208


>gi|254829765|ref|ZP_05234420.1| coproporphyrinogen III oxidase [Listeria monocytogenes 10403S]
          Length = 385

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 36/200 (18%), Positives = 73/200 (36%), Gaps = 10/200 (5%)

Query: 186 CDKFCTFCVV--PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
           C+  C +C     +  G  +   +  ++ E    +  G          V    G      
Sbjct: 21  CEHICFYCDFNKVFLEGQPVDEYVDLLIKEMELTVAKGPIAPV---DTVFVGGGTPTTLN 77

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
           +   + L  ++     L +    +         L K     D  +  + + VQS ++ +L
Sbjct: 78  EAQIARLCTAIHNTLPLKKDIEFSFEANPGDLSLSKLQAMQDHGVNRISMGVQSFNNELL 137

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           K + R HT  +  Q ++ +R +  +  +S D I   PG+T+ DF+ T+     +      
Sbjct: 138 KKIGRIHTVKDVYQSVENMRKIGFE-NVSIDLIFSLPGQTEADFQDTLK--QALDLDLPH 194

Query: 364 SFKYS--PRLGTPGSNMLEQ 381
              YS      T   N++++
Sbjct: 195 YSAYSLIIEPKTIFYNLMQK 214


>gi|21228790|ref|NP_634712.1| hypothetical protein MM_2688 [Methanosarcina mazei Go1]
 gi|20907307|gb|AAM32384.1| hypothetical protein MM_2688 [Methanosarcina mazei Go1]
          Length = 425

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 36/211 (17%), Positives = 67/211 (31%), Gaps = 17/211 (8%)

Query: 164 SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVC 223
                  N  +  T  +    GC   C+FC V  T G    +++   + E +K       
Sbjct: 145 PEPIWDVNNDKYFTYPVQSSVGCPFNCSFCAVNKTYGEFKIKNIDLTLSEIQKA----SK 200

Query: 224 EITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGD 283
            I  L  N        L G       +   + +  G        S      + L+K   +
Sbjct: 201 TIIFLDDN--------LYGNPSYSKKIFTKIKDDIGYKNWGGVASLGVYKDEKLLKLFSE 252

Query: 284 LDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGET 343
              +   +++  ++     L S+ +++   EY   I  +      I     FI  FP + 
Sbjct: 253 TGCIC--INVGFETLDSNKLSSVQKKNHIEEYTNCIKTLNDY--GILAYPGFIS-FPNDD 307

Query: 344 DDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
           +   +     ++K           +P  GTP
Sbjct: 308 EATLKELSIFLNKAEVDIFHYDFLTPFPGTP 338


>gi|307297508|ref|ZP_07577314.1| Radical SAM domain protein [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306916768|gb|EFN47150.1| Radical SAM domain protein [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 580

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 46/258 (17%), Positives = 84/258 (32%), Gaps = 45/258 (17%)

Query: 161 ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI-EISRSLSQVVDEARKLID 219
             +S+  G       V   +T   GC   C FC + + +G   +SRS   ++ E      
Sbjct: 274 HPVSLSRGRVKALETVRYSVTSHRGCYGQCNFCAIAFHQGRTVVSRSEDSIIQEISAFTR 333

Query: 220 N-GVC-EITLLGQNVNAWRG-----------------------KGLDGEKCTFSDLLYSL 254
           + G    +T +G       G                         L  +   + +LL  +
Sbjct: 334 DVGFRGTVTDVGGPTANMYGYECSIKEKVGACAKKRCLFPEVCSSLKLDHSRYLNLLKRI 393

Query: 255 SEIKGLVR------LRYTTS-----HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
            +I G+        +RY          RD    L++       +   L +  +  + ++L
Sbjct: 394 RKIPGVKHVFVSSGIRYDLILKDKRSGRDFLRELLQ-----KNVSGQLKIAPEHTAQKVL 448

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPD-IAISSDFIVGFPGETDDDFRATMDLVD-KIGYAQ 361
           + M +  +       +  +R V      I   FI   PG T +D       V  ++ Y  
Sbjct: 449 EYMGKP-SKDVLLDFLKEVRLVSSGKCHIIGYFIAAHPGCTKEDMMELKRFVKREMHYNP 507

Query: 362 AFSFKYSPRLGTPGSNML 379
                ++P  GT  + M 
Sbjct: 508 EQVQLFTPTPGTISTAMY 525


>gi|256828324|ref|YP_003157052.1| Radical SAM domain-containing protein [Desulfomicrobium baculatum
           DSM 4028]
 gi|256577500|gb|ACU88636.1| Radical SAM domain protein [Desulfomicrobium baculatum DSM 4028]
          Length = 852

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 61/360 (16%), Positives = 116/360 (32%), Gaps = 62/360 (17%)

Query: 89  NLKNSRIKEGGDLLVVVAGC-------------VAQAEGEEILRRSPIVNVVVGPQTYYR 135
            L+ ++   G  L++   GC             +   +GEE+L       + +G    + 
Sbjct: 124 PLRAAQRVNGHPLVIAGGGCTFNAEPLAPFMDVMVLGDGEEVLPEMLE-LIALGKDEGWS 182

Query: 136 LPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYN---------------RKRGVTAF- 179
             EL+ R      V    +  +D    +  +DG                    R +  F 
Sbjct: 183 RSELISRLAGIPGVYVPSFFEDDGSGAMRPLDGARPQVEKRIVMDMNKVSFPTRQIVPFG 242

Query: 180 --------LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEA-RKLIDNGVCEITLLGQ 230
                   + I  GC + C FC           R +  +     R L + G  E++ L  
Sbjct: 243 KPVHDRYSVEIARGCTRGCRFCQAGMIYRPVREREVDVLGSIIDRGLAETGSEELSFLSL 302

Query: 231 NVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY 290
           +            +  F        + +  V +   +     +S+ L++  G +      
Sbjct: 303 STG-----DFSALEALFLSSYSHCRQEQ--VSISLPSLRVGSVSEDLMRLMGKIRH--TG 353

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
           + L  ++G+ R+   +N+  T  E      +   +     +   F++G P ET +D    
Sbjct: 354 MTLAPEAGTQRLRNVINKGVTEDELLDHTGKAFRLGWQ-QVKLYFMMGLPTETREDLHGI 412

Query: 351 MDL-----------VDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLR 399
           +DL           V ++    A    + P+  TP      Q+      ERL  L+   R
Sbjct: 413 LDLCLKVAASAPKNVRRLQVT-AAVSPFVPKPHTP-FQWERQISMAEIEERLAYLRNIFR 470


>gi|257060026|ref|YP_003137914.1| radical SAM protein [Cyanothece sp. PCC 8802]
 gi|256590192|gb|ACV01079.1| Radical SAM domain protein [Cyanothece sp. PCC 8802]
          Length = 471

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 61/340 (17%), Positives = 104/340 (30%), Gaps = 38/340 (11%)

Query: 48  FFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAG 107
              +  E +N   D DL++L                    R  + +         VV+ G
Sbjct: 46  LQDEHVEPLNLNTDPDLVIL------------QVYITSAYRAYQLADYYRQRGSYVVLGG 93

Query: 108 CVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIV- 166
               A  EE L+ +    + +GP      P+ L   R G        S E     +  + 
Sbjct: 94  LHVTALPEEALQYAD--TIFLGPGE-DTWPQFLADFRGG-TPQKIYRSQERTLVGVPPIR 149

Query: 167 -DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR---SLSQVVDEARKLIDNGV 222
            D        V   + +  GC   C FC          S     +   + E  KL     
Sbjct: 150 RDLIKRHLYLVPNSIVVSRGCPHHCDFCYKDAFYQPGKSFYTQPVDDALAEIEKLPG--- 206

Query: 223 CEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHG 282
             +  L  ++      G +       + +  +    G V     T         L KA  
Sbjct: 207 KHLYFLDDHL-----FGHEAFASALFEGMKGM----GRVWQAAATVQSILQPGLLEKAV- 256

Query: 283 DLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGE 342
             +  +  L +  ++     LK  ++ H       +  + R     + ++S F+ G   +
Sbjct: 257 --ECGLRSLFVGFETLDFNNLKEQHKYHNLNRDYSLAIK-RLHDHGVMVNSSFVFGMDED 313

Query: 343 TDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQ 381
            +  F  T+D     G   A     +P  GTP    M+EQ
Sbjct: 314 DETVFDRTVDWAISQGIETATFHILTPYPGTPLYQRMVEQ 353


>gi|218246963|ref|YP_002372334.1| Radical SAM domain-containing protein [Cyanothece sp. PCC 8801]
 gi|218167441|gb|ACK66178.1| Radical SAM domain protein [Cyanothece sp. PCC 8801]
          Length = 471

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 61/340 (17%), Positives = 104/340 (30%), Gaps = 38/340 (11%)

Query: 48  FFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAG 107
              +  E +N   D DL++L                    R  + +         VV+ G
Sbjct: 46  LQDEHVEPLNLNTDPDLVIL------------QVYITSAYRAYQLADYYRQRGSYVVLGG 93

Query: 108 CVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIV- 166
               A  EE L+ +    + +GP      P+ L   R G        S E     +  + 
Sbjct: 94  LHVTALPEEALQYAD--TIFLGPGE-DTWPQFLADFRGG-TPQKIYRSQERTLVGVPPIR 149

Query: 167 -DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR---SLSQVVDEARKLIDNGV 222
            D        V   + +  GC   C FC          S     +   + E  KL     
Sbjct: 150 RDLIKRHLYLVPNSIVVSRGCPHHCDFCYKDAFYQPGKSFYTQPVDDALAEIEKLPG--- 206

Query: 223 CEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHG 282
             +  L  ++      G +       + +  +    G V     T         L KA  
Sbjct: 207 KHLYFLDDHL-----FGHEAFASALFEGMKGM----GRVWQAAATVQSILQPGLLEKAV- 256

Query: 283 DLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGE 342
             +  +  L +  ++     LK  ++ H       +  + R     + ++S F+ G   +
Sbjct: 257 --ECGLRSLFVGFETLDFNNLKEQHKYHNLNRDYSLAIK-RLHDHGVMVNSSFVFGMDED 313

Query: 343 TDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQ 381
            +  F  T+D     G   A     +P  GTP    M+EQ
Sbjct: 314 DETVFDRTVDWAISQGIETATFHILTPYPGTPLYQRMVEQ 353


>gi|160895859|ref|YP_001561441.1| lipoyl synthase [Delftia acidovorans SPH-1]
 gi|238687173|sp|A9BPT7|LIPA_DELAS RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|160361443|gb|ABX33056.1| lipoic acid synthetase [Delftia acidovorans SPH-1]
          Length = 326

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 34/210 (16%), Positives = 76/210 (36%), Gaps = 16/210 (7%)

Query: 161 ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS--QVVDEARKLI 218
           E  S  + G    +G   F+ + + C + C FC V + R       L   + ++ A+ + 
Sbjct: 75  EEASCPNIGECFGKGTATFMIMGDKCTRRCPFCDVGHGRPD----PLDTNEPLNLAKTIA 130

Query: 219 DNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLI 278
           +  +  + +   +    R    DG    F + + ++ E+  L ++       R   D  +
Sbjct: 131 ELRLKYVVITSVD----RDDLRDGGSGHFVECIKNIRELSPLTQIEILVPDFRGRDDRAL 186

Query: 279 KAH-GDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIV 337
           +        +M +        + R+ K             ++ + +++ P +   S  +V
Sbjct: 187 EILKAAPPDVMNHNL----ETAPRLYKEARPGSDYQFSLNLLKKFKALHPKVPTKSGIMV 242

Query: 338 GFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           G  GETD++    M  +           +Y
Sbjct: 243 GL-GETDEEILQVMRDMRAHDIDMLTIGQY 271


>gi|91201888|emb|CAJ74948.1| conserved hypothetical protein [Candidatus Kuenenia
           stuttgartiensis]
          Length = 340

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 40/229 (17%), Positives = 70/229 (30%), Gaps = 32/229 (13%)

Query: 188 KFCTFCVVPYTRGIEI--SRSLSQVVDEARKLIDNGVCEITLLG--QNVNAWRGKGLDGE 243
             CT+C            S S+++ + + +            +   Q+            
Sbjct: 55  GGCTYCANESFSPNVRKPSLSITEQIRKGKSFQKQRYGAEKFIAYFQSFTNTYADFH--- 111

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
             T             +V L   T       D L   +   +    ++   +QS  +  L
Sbjct: 112 --TLKACYEEALSDSDVVGLSIGTRPDCVNEDILNLINSYTEKYHVWIEYGLQSIHEETL 169

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           K +NR H    + + I+  +     I I    I+G P ETDDD   T D V ++G     
Sbjct: 170 KRINRGHDYKSFVEAINLTKKTC--INICVHVILGLPFETDDDMMKTADAVAEMGIQGIK 227

Query: 364 SFKYSPRLGTP---------------------GSNMLEQVDENVKAERL 391
                    T                       ++ LE++  +V  +RL
Sbjct: 228 LHHLYVAKNTALAEEYFKGNVTTLDIHEYVRLAADFLERIPPDVTIQRL 276


>gi|219670312|ref|YP_002460747.1| oxygen-independent coproporphyrinogen III oxidase
           [Desulfitobacterium hafniense DCB-2]
 gi|219540572|gb|ACL22311.1| oxygen-independent coproporphyrinogen III oxidase
           [Desulfitobacterium hafniense DCB-2]
          Length = 375

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 40/201 (19%), Positives = 73/201 (36%), Gaps = 23/201 (11%)

Query: 186 CDKFCTFCVV---PYTRGIEISRSLSQVVDEARKLIDNGVCEITL----LGQNVNAWRGK 238
           C + C +C     P+ R              A   + +   E+ L    + + +      
Sbjct: 11  CVQKCNYCAFYSEPWQRAK------------AEDYLASLNREVVLRQHEISEEIETLFIG 58

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGD---LDVLMPYLHLPV 295
           G        ++L   LS I G +R +       + +   + A          +  + L V
Sbjct: 59  GGTPTALPEAELDALLSIIHGKLRFKDGAEKTTEANPGTLTAEKLQILHTQGINRISLGV 118

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
           QS +D +LK + R H A E    +  IR       ++ D + G PG+T  ++R T++   
Sbjct: 119 QSFNDDLLKRIGRIHQAEEVADGVRLIREAGFK-NLNLDLMFGLPGQTQANWRDTLEEAL 177

Query: 356 KIGYAQAFSFKYSPRLGTPGS 376
           +I       +      GTP +
Sbjct: 178 RIRPEHLSVYGLMVEEGTPMA 198


>gi|282849041|ref|ZP_06258430.1| radical SAM domain protein [Veillonella parvula ATCC 17745]
 gi|282581316|gb|EFB86710.1| radical SAM domain protein [Veillonella parvula ATCC 17745]
          Length = 399

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 43/211 (20%), Positives = 73/211 (34%), Gaps = 19/211 (9%)

Query: 175 GVTAFLTIQEGCDKFCTFCVVPYTRGIE-ISR-SLSQVVDEARKLI----DNGVCEITLL 228
           G+  F     GC   CTFC      G   IS  +   +    +  +    +    E+   
Sbjct: 5   GMIPFFIPHVGCPYVCTFCNQSRITGQSGISHLTPEYIQQTIKDYVGTKRNEKFWEVAFY 64

Query: 229 GQNVNAWRGKGLDGEKCTFSDLLYSLSE--IKGLVRLRYTTSHPRDMSDCLIKAHGDLDV 286
           G +  A      D +          L +  I G+ R         D +  L++++G    
Sbjct: 65  GGSFTAI---TKDLQHKLLMPAYEILQQGLIDGI-RCSTRPDAVGDEAITLLQSYG---- 116

Query: 287 LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDD 346
            +  + L VQS +D IL    R HTA E  + + R++    D+ +    + G  GET   
Sbjct: 117 -VKTVELGVQSMNDGILVDAKRGHTAQEVVEAVTRLKHR--DMTVGVQLLPGLKGETWQT 173

Query: 347 FRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
              T   V  +       +       T  ++
Sbjct: 174 IIETAIAVVALRPDFVRIYPVLVIENTELAD 204


>gi|262376942|ref|ZP_06070168.1| radical SAM domain-containing protein [Acinetobacter lwoffii SH145]
 gi|262307980|gb|EEY89117.1| radical SAM domain-containing protein [Acinetobacter lwoffii SH145]
          Length = 802

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 64/325 (19%), Positives = 103/325 (31%), Gaps = 50/325 (15%)

Query: 131 QTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRG---VTAFLTIQEGCD 187
           Q +      L          + DY  +  + RL     G  R      +   + I  GC 
Sbjct: 363 QKHGERDVWLNAPPIPLTTEEMDYVFDLPYARLPHPAYGNARFPAFDMIKFSVNIMRGCF 422

Query: 188 KFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDN--GVCEIT--LLGQNVNAWR------ 236
             CTFC +    G  I +RS   ++ E  K+ D   G   I   L G   N +R      
Sbjct: 423 GGCTFCSITEHEGRIIQNRSEESILREVEKIRDTAPGFTGIISDLGGPTANMYRLACKDP 482

Query: 237 ----------------GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKA 280
                            + L  +    + L      + G+ ++   +    D++    + 
Sbjct: 483 EIEKNCRKPSCVFPGVCQNLHTDHAPLTQLYRKARSLPGIKKILIGSGLRYDLAVLNPEY 542

Query: 281 HGDL--DVLMPYLHLPVQSGSDRILKSMNRR--HTAYEYRQIIDRI-RSVRPDIAISSDF 335
             +L    +  YL +  +      L  M +    T   ++Q+ DR  +    +  +   F
Sbjct: 543 VKELVTHHVGGYLKIAPEHTEKGPLNKMMKPGIGTYDRFKQMFDRYSKEAGKEQYLIPYF 602

Query: 336 IVGFPGETDDDFRATMDLVDKIGY--AQAFSFKYSPR------------LGTPGSNMLEQ 381
           I   PG TD D       + K G+   Q  +F  SP                  +   E 
Sbjct: 603 IAAHPGTTDYDMMNLAIWLKKNGFRADQVQTFYPSPMATATTMYYTGKNPLAKVARYTEN 662

Query: 382 VDENVKAERLLCLQKKLREQQVSFN 406
           VD  VK E+   L K       S N
Sbjct: 663 VDI-VKGEKRRRLHKAFLRYHDSNN 686


>gi|167736886|ref|ZP_02409660.1| lipoyl synthase [Burkholderia pseudomallei 14]
          Length = 329

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 79/221 (35%), Gaps = 12/221 (5%)

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
           + +  ++++    E  S  + G    +G   F+ + + C + C FC V + R   +    
Sbjct: 64  KTILREHNLHTVCEEASCPNIGECFGKGTATFMIMGDKCTRRCPFCDVGHGRPDPL--DA 121

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
            +  + AR +    +  + +   +    R    DG    F + +  + E     R+   T
Sbjct: 122 DEPKNLARTIAALKLKYVVITSVD----RDDLRDGGAGHFVECIREVREQSSATRIEILT 177

Query: 268 SHPRD-MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
              R  +   L   +     +M +    V     R+ K            +++   +++ 
Sbjct: 178 PDFRGRLDRALAILNAAPPDVMNHNLETV----PRLYKEARPGSDYAHSLKLLKDFKALH 233

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           PD+A  S  +VG  GET D+    M  +           +Y
Sbjct: 234 PDVATKSGLMVGL-GETTDEILQVMRDLRAHDVDMLTIGQY 273


>gi|86742054|ref|YP_482454.1| cobalamin B12-binding [Frankia sp. CcI3]
 gi|86568916|gb|ABD12725.1| cobalamin B12-binding [Frankia sp. CcI3]
          Length = 618

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 38/204 (18%), Positives = 74/204 (36%), Gaps = 21/204 (10%)

Query: 177 TAFLTIQEGCDKFCTFCVVPYTRGI-EISRSLSQVVDEARKLI-DNGVCEITLLGQNVNA 234
           TA L    GC   C+FC V  T G    +RS   V DE    + D+G+    +   N   
Sbjct: 235 TATLITSRGCPFSCSFCTVHATVGRKFRARSPHNVADEIEHYVTDHGIRRFFVEDDNFTF 294

Query: 235 WRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT-SHPRDMSDCLIKAHGDLDVLMPYLHL 293
                   +     ++   ++     V L         D+   L+     +      L L
Sbjct: 295 --------DVPRVREICREITRRGLDVELHLPNGMTVVDLDGSLVDDM--VSAGFRSLFL 344

Query: 294 PVQSGSDRILKSMNRRHTA-YEYRQIIDRIRSVRPDIAISSDFIVGFPG-ETDDDFRATM 351
            +++     L+ + +  T+  +        R     + + +  IVG  G E  +  R ++
Sbjct: 345 GLETTDPVRLRRIRKGFTSLQKVNDGAALFREQ--GVDVGASLIVGLLGQECSELARDSV 402

Query: 352 DLVDK-IGYAQAFSFKYSPRLGTP 374
           +L+   + +   ++  + P  G+P
Sbjct: 403 NLMLAGVRF---WTNPFYPIPGSP 423


>gi|152977249|ref|YP_001376766.1| lipoyl synthase [Bacillus cereus subsp. cytotoxis NVH 391-98]
 gi|189046594|sp|A7GUG3|LIPA_BACCN RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|152026001|gb|ABS23771.1| lipoic acid synthetase [Bacillus cytotoxicus NVH 391-98]
          Length = 298

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 38/214 (17%), Positives = 79/214 (36%), Gaps = 13/214 (6%)

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           ++V ++ +  +I +    RK     F+ +   C + C FC V      E+   L +    
Sbjct: 37  HTVCEEAKCPNIHECWAVRK--TATFMILGAICTRACRFCAVKTGLPTEL--DLQEPERV 92

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
           A  ++  G+  + +        R    DG    F++ + ++        +    S    +
Sbjct: 93  ADSVVQMGLKHVVITAV----ARDDLKDGGAAVFAETVRAVRRKNPFTSIEVLPSDMGGV 148

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
            + L         ++ +    V+  SDR+      ++      + + R + ++PDI   S
Sbjct: 149 EENLRILMDAKPDILNHNIETVRRLSDRV--RARAKYDRS--LEFLRRAKEMQPDIPTKS 204

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
             +VG  GET +D    MD +           +Y
Sbjct: 205 SIMVGL-GETREDLLEAMDDLRANNVDILTLGQY 237


>gi|296108906|ref|YP_003615855.1| Radical SAM domain protein [Methanocaldococcus infernus ME]
 gi|295433720|gb|ADG12891.1| Radical SAM domain protein [Methanocaldococcus infernus ME]
          Length = 502

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 67/329 (20%), Positives = 122/329 (37%), Gaps = 59/329 (17%)

Query: 184 EGCDK----FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
            GC +     C+FCV P   G+   R    + +E + L + GV    +  Q       K 
Sbjct: 186 RGCPRALSKGCSFCVEPRRFGLPKFRDEKDIYEEVKALSEEGVKFFRVGRQPCIYSY-KA 244

Query: 240 LDGEK--------CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY- 290
           +D EK             L  SLS +K  V L    ++P  ++    ++     +L+ Y 
Sbjct: 245 IDTEKEEVPKPNVEAIEKLFKSLSSLKPRV-LHIDNANPAVIARHEEESREITKILVKYC 303

Query: 291 -----LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV--------RPDIAISSDFIV 337
                    V+S  ++++K+ N   T  +  + I+ +  +         P +    + + 
Sbjct: 304 TSGNVAAFGVESFDEKVIKANNLLTTPEDTLKAIEILNEIGGERGETGLPKLLPGINLLF 363

Query: 338 GFPGETDDDFRATMDLVDKIGYA------QAFSFKYSPRLGTPGSNMLEQVDENVKAERL 391
           G  GE+   F+   + +  I Y       +    +  P   T  S  L+ V +  K   L
Sbjct: 364 GLKGESKKTFKINYEYLKLI-YDKGLMLRRINIRQVVPFYSTDIS--LKDVKKAEKRREL 420

Query: 392 -LCLQKKLREQQVSFNDACV---GQII-EVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHN 446
            L  +KK+RE+  +     V   G I+ +V +E   K+     GR          S    
Sbjct: 421 FLWFKKKIREEIDNKMLRRVVPKGTILKDVFME--VKKDNLYFGR-------QFGSYPLL 471

Query: 447 IG--------DIIKVRITDVKISTLYGEL 467
           +G            V++ D  + ++ GE+
Sbjct: 472 VGVKDKVELKKFYDVKVVDYGMRSITGEI 500


>gi|289663958|ref|ZP_06485539.1| lipoyl synthase [Xanthomonas campestris pv. vasculorum NCPPB702]
 gi|289667543|ref|ZP_06488618.1| lipoyl synthase [Xanthomonas campestris pv. musacearum NCPPB4381]
          Length = 337

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 40/213 (18%), Positives = 69/213 (32%), Gaps = 20/213 (9%)

Query: 161 ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS--QVVDEARKLI 218
           E  S  +       G   F+ + E C + C+FC V + R           +    A  + 
Sbjct: 82  EEASCPNIHECFSHGTATFMILGEVCTRRCSFCDVAHGRPK----PPDASEPASLATTVA 137

Query: 219 DNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD---MSD 275
           D G+  + +   +    R    DG    F D + ++       R+   T   R    M  
Sbjct: 138 DMGLKYVVVTSVD----RDDLRDGGAQHFVDCISAIRASSPNTRIEILTPDFRGKGRMDR 193

Query: 276 CL-IKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSD 334
            L I A    DV    +        +     +           ++ R ++  P IA  S 
Sbjct: 194 ALEILALSPPDVFNHNIETVPDLYPN-----VRPGADYQWSLTLLQRFKAQHPSIATKSG 248

Query: 335 FIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
            ++G  GET +   AT+  +           +Y
Sbjct: 249 IMLGL-GETMEQVHATLRDLRAHDVDMITIGQY 280


>gi|222529152|ref|YP_002573034.1| radical SAM domain-containing protein [Caldicellulosiruptor bescii
           DSM 6725]
 gi|222455999|gb|ACM60261.1| Radical SAM domain protein [Caldicellulosiruptor bescii DSM 6725]
          Length = 341

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 42/235 (17%), Positives = 83/235 (35%), Gaps = 16/235 (6%)

Query: 173 KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV-VDEARKLIDNGVCEITLLGQN 231
           K+ +      Q  C   C FC         IS    +V +D  ++ I+ G+   +     
Sbjct: 2   KQRILPIFIPQYACPFNCIFC-----NQKTISGEKEEVSLDRIKRQIEQGLKINSDEEVE 56

Query: 232 VNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL 291
           + A+ G         F   L  L+     ++    ++ P  + +  ++     +  +  +
Sbjct: 57  L-AYYGGNFTAIDIDFQKKLLELANSFERIKSIRISTRPDCIDEERLRLLKLYN--VRTI 113

Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351
            L +QS  D +L +  R HTA   +  ++ I+       +    +VG P  T +    T 
Sbjct: 114 ELGIQSMFDHVLNASARGHTAQHSKNAMEMIKKF--GFLLGVQVMVGLPKSTSEKDIETA 171

Query: 352 DLVDKIGYAQAFSFKYSPRLGTPGSNM-----LEQVDENVKAERLLCLQKKLREQ 401
            ++       A  +      GT  + M      E +  N   ER   ++    E+
Sbjct: 172 KILTSFSPDIARIYPTLVIEGTYLAKMYQRGEYEPLSLNEAVERCSQIKSIFIEK 226


>gi|196232712|ref|ZP_03131563.1| lipoic acid synthetase [Chthoniobacter flavus Ellin428]
 gi|196223172|gb|EDY17691.1| lipoic acid synthetase [Chthoniobacter flavus Ellin428]
          Length = 295

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 35/225 (15%), Positives = 77/225 (34%), Gaps = 11/225 (4%)

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
             F  + + +D  +    E     +       G   F+   E C + C FC V   +   
Sbjct: 28  VFFSTKALISDLRLHTVCEEAQCPNRWECWSAGTATFMIAGERCTRACGFCAVTTAKPFA 87

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +   + +    A  +    +  + +        R    DG    F+  + ++   +  + 
Sbjct: 88  L--EVDEPERVAEAVKRMKLKHVVVTAV----ARDDLKDGGAEHFARTIEAIRAAQPDMA 141

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +   T       +CL         +  +    V+  +   L     ++      Q++ R+
Sbjct: 142 IEVLTPDFHAKEECLRMVADAKPHIFNHNVETVERLTP--LVRSRAKYRVS--LQVLRRM 197

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           + + P+I   S  ++G  GET+ +   TMD + + G       +Y
Sbjct: 198 KDIAPEIVTKSGIMLGL-GETEPEIFQTMDDLREAGVQVLTMGQY 241


>gi|138894227|ref|YP_001124680.1| coproporphyrinogen III oxidase [Geobacillus thermodenitrificans
           NG80-2]
 gi|134265740|gb|ABO65935.1| Coproporphyrinogen oxidase, anaerobic [Geobacillus
           thermodenitrificans NG80-2]
          Length = 501

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 38/247 (15%), Positives = 82/247 (33%), Gaps = 13/247 (5%)

Query: 129 GPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
           G        +L E     K  ++   ++ D+  +L++V   Y+    V+ ++ I   C  
Sbjct: 132 GMTKEEAHQKLAEEYLVTKEKIELMQAIVDR--QLTVVPDLYDLSHEVSIYIGIPF-CPT 188

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS 248
            C +C  P         S+   +      ++     +   G  +      G      T  
Sbjct: 189 KCAYCTFPAYAINGRQGSVDAFLAGLHYEMEAVGRFLRERGIRITTIYYGGGTPTSITAE 248

Query: 249 DLLYSLS-------EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
           ++    +       ++  +  +      P  ++   +       +    + +  QS    
Sbjct: 249 EMDQLYAHMYKVFPDVDRVREITVEAGRPDTITPEKLDVLKKWQI--DRISINPQSYIQE 306

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
            LK++ R HT  E        R +  +  I+ D I+G PGE   +F  T+   +++    
Sbjct: 307 TLKAIGRHHTVEETINKFHLARKMGMN-NINMDLIIGLPGEGLREFTHTLAETEQLMPES 365

Query: 362 AFSFKYS 368
                 S
Sbjct: 366 LTVHTLS 372


>gi|313200915|ref|YP_004039573.1| radical sam domain-containing protein [Methylovorus sp. MP688]
 gi|312440231|gb|ADQ84337.1| Radical SAM domain protein [Methylovorus sp. MP688]
          Length = 724

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 46/264 (17%), Positives = 88/264 (33%), Gaps = 35/264 (13%)

Query: 151 DTDYSVEDKFERLSIV---DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRS 206
           + DY  +  + R       D        +   + I  GC   CTFC +    G  I SRS
Sbjct: 349 EMDYVYDLPYARKPHPVYQDARIPAWEMIRFSVNIMRGCFGGCTFCSITEHEGRIIQSRS 408

Query: 207 LSQVVDEARKLIDN--GVCEIT--LLGQNVNAWR----------------------GKGL 240
              +++E  ++ D   G   I   L G   N +R                       + L
Sbjct: 409 EESILNEIVEIRDKVEGFTGIISDLGGPTANMYRMACKSEKIEQSCRKLSCVYPGICENL 468

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL--DVLMPYLHLPVQSG 298
           + +      L      IKG+ ++   +    D++    +   +L    +  YL +  +  
Sbjct: 469 NTDHSALIQLYRKARNIKGVKKILVGSGLRYDLAVTSPEYVKELVQHHVGGYLKIAPEHS 528

Query: 299 SDRILKSMNRRHTAYE--YRQIIDRI-RSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
            + +L  M +        ++++ +R  +       +   FI   PG TD+D       + 
Sbjct: 529 EENVLSKMMKPGMGAYDKFKEMFERFSKEAGKQQYLIPYFIAAHPGTTDEDMLNLALWLK 588

Query: 356 KIGYAQAFSFKYSPRLGTPGSNML 379
           K  +       ++P      + M 
Sbjct: 589 KYDFKLDQVQTFTPTPMAMATAMY 612


>gi|269469069|gb|EEZ80624.1| Fe-S oxidoreductase [uncultured SUP05 cluster bacterium]
          Length = 303

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 43/197 (21%), Positives = 72/197 (36%), Gaps = 17/197 (8%)

Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDEARKLID-----NGVCEITLLGQNVNAWRGKGLDG 242
             CTFC           R+   ++++ +   +      G  +     Q            
Sbjct: 42  GGCTFCNNVTFSPNG--RAPDPILEQIQNGREVLIKRTGAKKYIAYFQAYTNTYS----- 94

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV--LMPYLHLPVQSGSD 300
           +  T S +  +      ++ L   T  P  + D +I    D        +L L +QS  D
Sbjct: 95  DIETLSKMYETALSEDDIIGLSIGT-RPDCVPDEVIDLLVDYQNKGFDIWLELGLQSAFD 153

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
           + LK +NR H   EYRQ +   R     + + +  I+G PGE +  F+AT+  V  +G  
Sbjct: 154 KTLKRINRGHGFEEYRQTLLAARGK--GLRVCTHLIIGLPGENETHFKATLQRVLNLGVD 211

Query: 361 QAFSFKYSPRLGTPGSN 377
                      GT  +N
Sbjct: 212 GLKFHPLHVVKGTQLAN 228


>gi|262376030|ref|ZP_06069261.1| lipoyl synthase [Acinetobacter lwoffii SH145]
 gi|262309124|gb|EEY90256.1| lipoyl synthase [Acinetobacter lwoffii SH145]
          Length = 337

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 44/264 (16%), Positives = 84/264 (31%), Gaps = 16/264 (6%)

Query: 109 VAQAEGEEILRRSPI--VNVVVGPQTYYRLPELLERARFGKRVVDT--DYSVEDKFERLS 164
             +  G E + R P+  V  V  P+    +   +      +R+  T     +    E  +
Sbjct: 10  GVKLRGAEKVARIPVKVVPTVETPRKPDWIRVKMAAPEEVQRIKTTLRQQKLHTVCEEAA 69

Query: 165 IVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCE 224
             +       G   F+ + + C + C FC V    G   +    +    A  + + G+  
Sbjct: 70  CPNLPECFGGGTATFMIMGDICTRRCPFCDV--AHGRPNALDADEPRHMAETIANLGLKY 127

Query: 225 ITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL 284
             +   +    R   LDG    F D +     +     L       R   D  ++   + 
Sbjct: 128 AVITSVD----RDDLLDGGAQHFVDCIKEARALSPNTLLEILVPDFRGRMDIALRIMTE- 182

Query: 285 DVLMPYLHLPVQSGSDRIL-KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGET 343
               P         +   L K+M           ++   +   PD+      +VG  GET
Sbjct: 183 ---CPPDVFNHNIETVPRLYKAMRPGSDYQHSLNLLKMFKEYCPDVPTKCGLMVGI-GET 238

Query: 344 DDDFRATMDLVDKIGYAQAFSFKY 367
           +++  A +D +   G       +Y
Sbjct: 239 EEEVLALLDDLYAHGVDYVTIGQY 262


>gi|288941688|ref|YP_003443928.1| radical SAM domain-containing protein [Allochromatium vinosum DSM
           180]
 gi|288897060|gb|ADC62896.1| Radical SAM domain protein [Allochromatium vinosum DSM 180]
          Length = 343

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 35/207 (16%), Positives = 80/207 (38%), Gaps = 14/207 (6%)

Query: 168 GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITL 227
           G  +R+  V + + I   C + C +C +      +       +V+ A  L       + L
Sbjct: 54  GFPDRRAEVRSVIEISNICKQRCNYCNIGCEDTQKYVIPSDDLVEIAAFLHHERGRRVLL 113

Query: 228 LGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL 287
           L          G + ++   ++++ + ++IK  +          ++S    +A  +    
Sbjct: 114 L--------QSGENKDRRFVANVIRACAQIKDRLPDIQLIGCIGNLSRDQYRAMREAG-- 163

Query: 288 MPYLHLPVQSGSDRILKSMNRRHTAYEYRQII-DRIRSVRPDIAISSDFIVGFPGETDDD 346
           +    L ++  S+ +L    + H  +  R+   D +  +     + S  IVG PG+T+DD
Sbjct: 164 VDRYLLKIE-ASNPVLYEAAKPHDTWSERRQCLDDLLEL--GFMVGSGIIVGLPGQTEDD 220

Query: 347 FRATMDLVDKIGYAQAFSFKYSPRLGT 373
               +  + ++      +  + P  GT
Sbjct: 221 LVGDLRFLSELDLDMVSASVFIPGHGT 247


>gi|220906175|ref|YP_002481486.1| Radical SAM domain-containing protein [Cyanothece sp. PCC 7425]
 gi|219862786|gb|ACL43125.1| Radical SAM domain protein [Cyanothece sp. PCC 7425]
          Length = 525

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 52/343 (15%), Positives = 103/343 (30%), Gaps = 39/343 (11%)

Query: 52  GYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQ 111
           G E        DL++++   I+    E     + R   L            V V G    
Sbjct: 56  GLETEADWQWCDLVIISAMVIQ---REDFQDLIRRAIELGKK---------VAVGGPYPT 103

Query: 112 AEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYN 171
           +  E  L      + ++  +    +P  LE    G          +    + SI      
Sbjct: 104 SYPEAALEV--GAHYLILDEGECTIPLFLEALHQGADRGIYRSPEKPDVTQTSIPRFDLL 161

Query: 172 RKRGVTAF-LTIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVCEITLLG 229
             +   A  +    GC   C FC +    G +  +++  Q++ E   L   G      + 
Sbjct: 162 DLQAYMAVTVQFSRGCPFQCEFCDIINLYGRKPRTKTPEQMLAELEVLYQIGWQRYVFIV 221

Query: 230 QNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD------MSDCLIKAHGD 283
            +          G K      L +L  I  +    Y      +        + LI+    
Sbjct: 222 DD-------NFIGNKRNAKAFLRAL--IPWMEERNYPFILLTEASLNLAEDEELIELM-- 270

Query: 284 LDVLMPYLHLPVQSGSDRILKSMNR-RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGE 342
           +      + + +++     L  +++ ++T     +   +I      + I S FI+GF  E
Sbjct: 271 VRAGFTIVFMGIETPDVDSLVGIHKLQNTRSSLIESCQKITRK--GLHIMSGFIIGFDNE 328

Query: 343 TDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
                      +++ G  Q           T    M +++   
Sbjct: 329 KAGAGGRIQSFIEEAGIVQCQFSLLQALQNT---AMWDRLKRE 368


>gi|295838954|ref|ZP_06825887.1| oxygen-independent coproporphyrinogen III oxidase [Streptomyces sp.
           SPB74]
 gi|197695509|gb|EDY42442.1| oxygen-independent coproporphyrinogen III oxidase [Streptomyces sp.
           SPB74]
          Length = 413

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 45/242 (18%), Positives = 86/242 (35%), Gaps = 27/242 (11%)

Query: 186 CDKFCTFCVV-PYTRGIEI-------SRSLSQVVDEARKLIDNGVCEIT-LLGQNVNAWR 236
           C   C +C    YT            SR      D     +   +     +LG++    R
Sbjct: 42  CASRCGYCDFNTYTASELRGTGGVLASR------DNYADTLAQEIRLAREVLGEDPRPAR 95

Query: 237 GKGLDGEKCTF---SDLLYSLSEIK---GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY 290
                G   T    +DL+  L+ ++   GL      T+     S          +     
Sbjct: 96  TVFFGGGTPTLLPAADLVRMLAAVRDEFGLAPDAEVTTEANPESVDPAYLETLREGGFNR 155

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
           +   +QS    +L+ ++R HT       +   R+   +  ++ D I G PGE+D D+RA+
Sbjct: 156 ISFGMQSARPHVLRVLDRNHTPGRPEACVAEARAAGFE-HVNLDLIYGTPGESDADWRAS 214

Query: 351 MDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ-----VDENVKAERLLCLQKKLREQQVSF 405
           ++     G     ++      GT  +  + +      D++  A+R L   + L +    +
Sbjct: 215 LEAAIGAGPDHVSAYALIVEEGTGLARRVRRGEIPMTDDDEHADRYLIADELLAKAGFDW 274

Query: 406 ND 407
            +
Sbjct: 275 YE 276


>gi|219666970|ref|YP_002457405.1| cobalamin B12-binding domain protein [Desulfitobacterium hafniense
           DCB-2]
 gi|219537230|gb|ACL18969.1| cobalamin B12-binding domain protein [Desulfitobacterium hafniense
           DCB-2]
          Length = 456

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 38/204 (18%), Positives = 71/204 (34%), Gaps = 18/204 (8%)

Query: 176 VTAFLTIQEGCDKFCTFCV-VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA 234
             A +    GC   C FC     T G  + RS  ++V E + + +  V            
Sbjct: 184 PIASIRTSLGCFGRCNFCALWSITNGKYLQRSPERIVAELQGIQEEIV------------ 231

Query: 235 WRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL-MPYLHL 293
           +             D L  L +  G+ R +Y      D      +       + +  + +
Sbjct: 232 FFCDDESMCDTRRMDQLADLIQEAGI-RKKYFLYGRVDTIVKHPELFAKWKNIGLIQVFV 290

Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
             +S SD  L+ +N+  T  +  + +  +  +  +I I + F++  P  T  +F   +  
Sbjct: 291 GFESFSDERLQGLNKNITVAQQEEAVKILNDL--NIDIYASFVID-PSFTRPEFAQLIAY 347

Query: 354 VDKIGYAQAFSFKYSPRLGTPGSN 377
             K+  A A     +P  GT    
Sbjct: 348 TRKLNIAYAALSVLTPLPGTALYE 371


>gi|253998828|ref|YP_003050891.1| Radical SAM domain-containing protein [Methylovorus sp. SIP3-4]
 gi|253985507|gb|ACT50364.1| Radical SAM domain protein [Methylovorus sp. SIP3-4]
          Length = 724

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 46/264 (17%), Positives = 88/264 (33%), Gaps = 35/264 (13%)

Query: 151 DTDYSVEDKFERLSIV---DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRS 206
           + DY  +  + R       D        +   + I  GC   CTFC +    G  I SRS
Sbjct: 349 EMDYVYDLPYARKPHPVYQDARIPAWEMIRFSVNIMRGCFGGCTFCSITEHEGRIIQSRS 408

Query: 207 LSQVVDEARKLIDN--GVCEIT--LLGQNVNAWR----------------------GKGL 240
              +++E  ++ D   G   I   L G   N +R                       + L
Sbjct: 409 EESILNEIVEIRDKVEGFTGIISDLGGPTANMYRMACKSEKIEQSCRKLSCVYPGICENL 468

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL--DVLMPYLHLPVQSG 298
           + +      L      IKG+ ++   +    D++    +   +L    +  YL +  +  
Sbjct: 469 NTDHSALIQLYRKARNIKGVKKILVGSGLRYDLAVTSPEYVKELVQHHVGGYLKIAPEHS 528

Query: 299 SDRILKSMNRRHTAYE--YRQIIDRI-RSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
            + +L  M +        ++++ +R  +       +   FI   PG TD+D       + 
Sbjct: 529 EENVLSKMMKPGMGAYDKFKEMFERFSKEAGKQQYLIPYFIAAHPGTTDEDMLNLALWLK 588

Query: 356 KIGYAQAFSFKYSPRLGTPGSNML 379
           K  +       ++P      + M 
Sbjct: 589 KYDFKLDQVQTFTPTPMAMATAMY 612


>gi|227355096|ref|ZP_03839507.1| oxygen-independent coproporphyrinogen III oxidase [Proteus
           mirabilis ATCC 29906]
 gi|227164883|gb|EEI49730.1| oxygen-independent coproporphyrinogen III oxidase [Proteus
           mirabilis ATCC 29906]
          Length = 457

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 46/254 (18%), Positives = 93/254 (36%), Gaps = 32/254 (12%)

Query: 173 KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS-------QVVDEARKLIDNGVCEI 225
           +R ++ ++ I   C K C FC           ++         ++++ AR   +  V ++
Sbjct: 50  ERPLSLYIHIPF-CHKLCYFCGCNKIITRHKHKADEYLDVLEKEIINRARYFKNRKVTQM 108

Query: 226 TLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLD 285
                           G   TF D    +S +  L+R  +      ++S  +     +LD
Sbjct: 109 HW-------------GGGTPTFLD-KQQISRLVALLRQHFHFVENAELSIEIDPREIELD 154

Query: 286 VL-------MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVG 338
           V+          L + VQ  +  + + +NR         ++ R R V    + S D I G
Sbjct: 155 VIDHLHNEGFNRLSMGVQDFNKEVQQKVNREQDEAFIFSLVARAREVGFH-STSIDLIYG 213

Query: 339 FPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKK 397
            P +T + F  T+  V ++   +   F Y+       +   ++  D  +  E+L  LQ+ 
Sbjct: 214 LPKQTKESFAFTLKKVIELSPDRLSVFNYAHLPNLFAAQRKIKDEDLPLAEEKLEILQET 273

Query: 398 LREQQVSFNDACVG 411
           +     +     +G
Sbjct: 274 ITTLTTNGYQ-FIG 286


>gi|89895915|ref|YP_519402.1| hypothetical protein DSY3169 [Desulfitobacterium hafniense Y51]
 gi|89335363|dbj|BAE84958.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 618

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 55/347 (15%), Positives = 119/347 (34%), Gaps = 49/347 (14%)

Query: 72  IREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ 131
           +  +A E +   L  I+  K + +     LL V     A    E    R      +   +
Sbjct: 170 MIGEAEETLPQLLRLIQEQKENPVSREEFLLKVAQVEGAYV-PEFYQVRYLEDGRIQSIE 228

Query: 132 TYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCT 191
              R+P+++++A     V + D S       +  ++  ++R       L +  GC + C 
Sbjct: 229 ADPRVPKIVQKAI----VRNLDQSYFPTSPIVPYMEIVHDR-----MMLEVMRGCSRGCR 279

Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFSDL 250
           FC           RS   ++  A +L+ + G  EI+L   +          G+      +
Sbjct: 280 FCQAGMLYRPVRERSPETLLRHAEELVKSTGYEEISLTSLST---------GDYSCIQPV 330

Query: 251 LYSLSEI--KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
           +  + +   +  V +   +         L +    +      L    ++G+ R+   +N+
Sbjct: 331 IRGILDKYSEDKVSVSLPSLRLDSFDVKLAEEVQKVRK--SGLTFAPEAGTQRLRDVINK 388

Query: 309 RHTAYEYRQIID-RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI-----GYAQA 362
             T        +   ++    I +   F++G P ET +D    + +  K+        + 
Sbjct: 389 GVTEENLLDAAESAFKAGWSGIKLY--FMIGLPTETQEDLDGIVSMAKKVVELGTRLGRR 446

Query: 363 FS----------------FKYSPRLGTPGSNMLEQ-VDENVKAERLL 392
                             F++ P+ GT      +Q + E ++  R+ 
Sbjct: 447 NVNVTVSTSSFVPKSHTPFQWEPQEGTASLKQKQQYLREKLRDRRIK 493


>gi|254509411|ref|ZP_05121493.1| lipoic acid synthetase [Vibrio parahaemolyticus 16]
 gi|219547665|gb|EED24708.1| lipoic acid synthetase [Vibrio parahaemolyticus 16]
          Length = 321

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 28/182 (15%), Positives = 63/182 (34%), Gaps = 10/182 (5%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V    G  ++    +    A+ + D  +  + +   +    R    DG   
Sbjct: 94  CTRRCPFCDV--AHGRPLAPEAEEPKKLAKTIQDMKLKYVVITSVD----RDDLRDGGAQ 147

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
            F+D    + ++   +++       R   D  ++   D     P +       + R+ + 
Sbjct: 148 HFADCNREIRKLNPNIKIETLVPDFRGRMDVALELLKDNP---PDVFNHNLETAPRLYRK 204

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
                       ++ + +   PDI   S  ++G  GET ++    +  + + G       
Sbjct: 205 ARPGANYKWSLDLLKKFKEQHPDIPTKSGIMMGL-GETKEEIIEVLKDLREHGVTMLTLG 263

Query: 366 KY 367
           +Y
Sbjct: 264 QY 265


>gi|255525330|ref|ZP_05392270.1| oxygen-independent coproporphyrinogen III oxidase [Clostridium
           carboxidivorans P7]
 gi|296188198|ref|ZP_06856590.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Clostridium carboxidivorans P7]
 gi|255511002|gb|EET87302.1| oxygen-independent coproporphyrinogen III oxidase [Clostridium
           carboxidivorans P7]
 gi|296047324|gb|EFG86766.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Clostridium carboxidivorans P7]
          Length = 383

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 35/218 (16%), Positives = 82/218 (37%), Gaps = 23/218 (10%)

Query: 186 CDKFCTFCVVPYTRGIE-----ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL 240
           C + C +C  P     E      S++L+    +        +  I + G       G   
Sbjct: 22  CKQKCLYCDFPSFANKENLMLDYSKALAS---DIESCSRRSIKTIFIGG-------GTPT 71

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTTS-HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
                 + ++  ++  +K    L +T   +P   +   +K   ++   +  L + +Q   
Sbjct: 72  YLTLEAWGNIKKAIDILKKTKDLEFTVEGNPGTFTKEKLKFLKEMG--VNRLSIGLQCWQ 129

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
           + IL+ + R HT  ++ +  +  R++     I+ D + G P +  + ++ T+D V ++  
Sbjct: 130 NNILEKLGRIHTVQDFIKSYEMARNIGFQ-NINVDLMFGLPEQNMEQWQETLDKVVELSP 188

Query: 360 AQAFSFKYSPRLGTPGSNMLEQ----VDENVKAERLLC 393
                +      GTP  +M ++      E     ++  
Sbjct: 189 EHISCYSLIIEEGTPFYSMDQKGKLIFPEEEMERKMYR 226


>gi|313623722|gb|EFR93868.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Listeria innocua FSL J1-023]
          Length = 399

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 37/200 (18%), Positives = 73/200 (36%), Gaps = 10/200 (5%)

Query: 186 CDKFCTFCVV--PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
           C+  C +C     +  G  +   +  ++ E       G          V    G      
Sbjct: 35  CEHICYYCDFNKVFLEGQPVDEYVDLLIKEMEMTAAKGPIAPV---DTVFVGGGTPTTLN 91

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
           +   + L  ++ EI  L      +         + K     +  +  + + VQS ++ +L
Sbjct: 92  EAQIARLCTAIQEILPLKNEIEFSFEANPGDLSISKLQAMQNYGVNRISMGVQSFNNELL 151

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           K + R HT  +  Q ++ +R V  +  +S D I   PG+T+ DF+ T+     +      
Sbjct: 152 KKIGRIHTVKDVYQSVENMRKVGFE-NVSIDLIFSLPGQTEADFKDTLK--QALDLDLPH 208

Query: 364 SFKYS--PRLGTPGSNMLEQ 381
              YS      T   N++++
Sbjct: 209 YSAYSLIIEPKTIFYNLMQK 228


>gi|257784479|ref|YP_003179696.1| Radical SAM domain-containing protein [Atopobium parvulum DSM
           20469]
 gi|257472986|gb|ACV51105.1| Radical SAM domain protein [Atopobium parvulum DSM 20469]
          Length = 621

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 47/254 (18%), Positives = 81/254 (31%), Gaps = 33/254 (12%)

Query: 161 ERLSIVDGGYNRKRGVTAFLT------IQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEA 214
             LS+ D    R    T  +       IQ GC + C FC    T      R   Q+V   
Sbjct: 243 PDLSVTDPVAQRIVPYTEIVQDRLALEIQRGCARGCRFCQAGMTYRPVRERPAQQIVKAG 302

Query: 215 RKL-IDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
            +  + +G  E++L   +       G    +         +       R+   +      
Sbjct: 303 EEGLLKSGYDEVSLTSLSTTDHSQCGYILRRMNSDLRKRGV-------RISIPSQRMDAF 355

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD--IAI 331
              +  A          L    ++GS R+   +N+  T      +    R+   +    +
Sbjct: 356 GAEMADAVSTSRR--GGLTFAPEAGSQRMRDVINKNVTED---DLESAARNAFENGWRRM 410

Query: 332 SSDFIVGFPGETDDDFRA-------TMDLVDKIG----YAQAFSFKYSPRLGTPGSNMLE 380
              F++G P ETD D +A        +D+  +IG       A    + P+  TP    + 
Sbjct: 411 KLYFMMGLPTETDQDIQAIPAVAKRILDIGREIGGKGVTVSASVAVFVPKSYTP-FQWVG 469

Query: 381 QVDENVKAERLLCL 394
           Q+       R   L
Sbjct: 470 QISREEAQRRQQLL 483


>gi|222869726|gb|EEF06857.1| predicted protein [Populus trichocarpa]
          Length = 326

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 34/210 (16%), Positives = 76/210 (36%), Gaps = 16/210 (7%)

Query: 161 ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS--QVVDEARKLI 218
           E  S  + G    +G   F+ + + C + C FC V + R       L   + ++ A+ + 
Sbjct: 75  EEASCPNIGECFGKGTATFMIMGDKCTRRCPFCDVGHGRPD----PLDTNEPLNLAKTIA 130

Query: 219 DNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLI 278
           +  +  + +   +    R    DG    F + + ++ E+  L ++       R   D  +
Sbjct: 131 ELRLKYVVITSVD----RDDLRDGGSGHFVECIKNIRELSPLTQIEILVPDFRGRDDRAL 186

Query: 279 KAH-GDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIV 337
           +        +M +        + R+ K             ++ + +++ P +   S  +V
Sbjct: 187 EILKAAPPDVMNHNL----ETAPRLYKEARPGSDYQFSLNLLKKFKALHPKVPTKSGIMV 242

Query: 338 GFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           G  GETD++    M  +           +Y
Sbjct: 243 GL-GETDEEILQVMRDMRAHDIDMLTIGQY 271


>gi|196250672|ref|ZP_03149360.1| Coproporphyrinogen dehydrogenase [Geobacillus sp. G11MC16]
 gi|196209751|gb|EDY04522.1| Coproporphyrinogen dehydrogenase [Geobacillus sp. G11MC16]
          Length = 519

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 38/247 (15%), Positives = 82/247 (33%), Gaps = 13/247 (5%)

Query: 129 GPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
           G        +L E     K  ++   ++ D+  +L++V   Y+    V+ ++ I   C  
Sbjct: 150 GMTKEEAHQKLAEEYLVTKEKIELMQAIVDR--QLTVVPDLYDLSHEVSIYIGIPF-CPT 206

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS 248
            C +C  P         S+   +      ++     +   G  +      G      T  
Sbjct: 207 KCAYCTFPAYAINGRQGSVDAFLAGLHYEMEAVGRFLRERGIRITTIYYGGGTPTSITAE 266

Query: 249 DLLYSLS-------EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
           ++    +       ++  +  +      P  ++   +       +    + +  QS    
Sbjct: 267 EMDQLYAHMYKVFPDVDRVREITVEAGRPDTITPEKLDVLKKWQI--DRISINPQSYIQE 324

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
            LK++ R HT  E        R +  +  I+ D I+G PGE   +F  T+   +++    
Sbjct: 325 TLKAIGRHHTVEETINKFHLARKMGMN-NINMDLIIGLPGEGLREFTHTLAETEQLMPES 383

Query: 362 AFSFKYS 368
                 S
Sbjct: 384 LTVHTLS 390


>gi|254428415|ref|ZP_05042122.1| lipoic acid synthetase [Alcanivorax sp. DG881]
 gi|196194584|gb|EDX89543.1| lipoic acid synthetase [Alcanivorax sp. DG881]
          Length = 325

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 36/207 (17%), Positives = 72/207 (34%), Gaps = 10/207 (4%)

Query: 161 ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN 220
           E  +  +       G   F+ + + C + C FC V + R   +     + +  A  + + 
Sbjct: 69  EEAACPNLPECFGGGTATFMIMGDICTRRCAFCDVGFGRPNAL--DAEEPLHLAESVENL 126

Query: 221 GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKA 280
           G+  + +   +    R    DG    F++ +  +       R+   T    D   CL  A
Sbjct: 127 GLNYVVITSVD----RDDLADGGAEHFAECIRQVRTRTPDTRIEILTP---DFRPCLDTA 179

Query: 281 HGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFP 340
              L    P +          + K +           ++ R +++RPD++  S  +VG  
Sbjct: 180 VEILSETAPDVFNHNIETVPELYKHIRPGARYQHSLDLLKRYKALRPDVSTKSGIMVGL- 238

Query: 341 GETDDDFRATMDLVDKIGYAQAFSFKY 367
           GET +    T+  +           +Y
Sbjct: 239 GETFEQVINTIKDLRAHDVNMITIGQY 265


>gi|153840441|ref|ZP_01993108.1| lipoic acid synthetase [Vibrio parahaemolyticus AQ3810]
 gi|149745895|gb|EDM57025.1| lipoic acid synthetase [Vibrio parahaemolyticus AQ3810]
          Length = 308

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 28/182 (15%), Positives = 60/182 (32%), Gaps = 10/182 (5%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V    G  +     +    AR + D  +  + +   +    R    DG   
Sbjct: 81  CTRRCPFCDV--AHGRPLPPEAEEPQKLARTIADMKLKYVVITSVD----RDDLRDGGAQ 134

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
            F+D    +  +   +++       R   D  +    D     P +       + R+ + 
Sbjct: 135 HFADCNREIRALNPDIKIETLVPDFRGRMDVALDLMKDNP---PDVFNHNLETAPRLYRK 191

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
                      +++ + +   PD+   S  ++G  GET ++    +  +   G       
Sbjct: 192 ARPGANYKWSLELLKKFKEQHPDVPTKSGLMMGL-GETKEEIIEVLKDLRAHGVTMLTLG 250

Query: 366 KY 367
           +Y
Sbjct: 251 QY 252


>gi|17231394|ref|NP_487942.1| hypothetical protein all3902 [Nostoc sp. PCC 7120]
 gi|17133036|dbj|BAB75601.1| all3902 [Nostoc sp. PCC 7120]
          Length = 533

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 47/342 (13%), Positives = 107/342 (31%), Gaps = 38/342 (11%)

Query: 62  ADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRS 121
           AD+++ +   +      +    L +I+  K          LV V G    +   ++  ++
Sbjct: 66  ADIVIFSAMIV------QKQDLLEQIQEAKRRGK------LVAVGGPYPTSTPHDV--QN 111

Query: 122 PIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGV-TAFL 180
              + ++  +    LP  +E  + G+       + +       +               +
Sbjct: 112 VGTDFLILDEGEITLPMFVEAVQRGETSGTFRTAEKPDVTSTPVPRFDLLELNAYDMMSV 171

Query: 181 TIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
               GC   C FC +    G +  +++ +Q++ E   L + G      +  +        
Sbjct: 172 QFSRGCPFQCEFCDIIVLYGRKPRTKTPAQLLAELDYLYELGWRRGVFMVDD-------N 224

Query: 240 LDGEKCTFSDLLYSL----SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPV 295
             G K     LL  L    +E +   +     S        ++    +       + L +
Sbjct: 225 FIGNKRNVKLLLKELKVWMAEHQYPFKFDTEASVDLAQDQEMLDLMVESG--FSAVFLGI 282

Query: 296 QSGSDRILKSMNRR-HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           ++  +  L+   +  +T       +  I  ++  +   + FI+GF GE        +   
Sbjct: 283 ETPDEDSLQLTKKFQNTRSSLTDAVQTI--IKAGLRPMAGFIIGFDGEKAGAGDRIVRFA 340

Query: 355 DKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQK 396
           ++ G              T   + L+      K  RL   Q 
Sbjct: 341 EQAGIPSTTFAMLQALPNTALWHRLK------KEGRLRENQD 376


>gi|87301882|ref|ZP_01084716.1| hypothetical protein WH5701_01115 [Synechococcus sp. WH 5701]
 gi|87283450|gb|EAQ75405.1| hypothetical protein WH5701_01115 [Synechococcus sp. WH 5701]
          Length = 539

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 30/182 (16%), Positives = 56/182 (30%), Gaps = 12/182 (6%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISR-SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK 238
           +  + GC   C +CV     G  +    + +VV E R+L D GV             R  
Sbjct: 255 VQTKRGCPHNCCYCVYTVVEGKAVRVNPVEEVVAEMRQLYDRGVRGFWFTDAQFIPARRY 314

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
             D +      LL ++                 ++   L +   +    M Y  + + SG
Sbjct: 315 IEDAK-----QLLRAILAAGMDDIRWAAYIRADNLDAELAELMVETG--MDYFEIGITSG 367

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPG--ETDDDFRATMDLVDK 356
           S  +++ M   +      +    +   R            F    E  +  R T+    +
Sbjct: 368 SQELVRKMRMGYNLRTVLENCRLL--ARAGFREHVSVNYSFNVIDERPETIRQTVAYHRE 425

Query: 357 IG 358
           + 
Sbjct: 426 LE 427


>gi|308051447|ref|YP_003915013.1| oxygen-independent coproporphyrinogen III oxidase [Ferrimonas
           balearica DSM 9799]
 gi|307633637|gb|ADN77939.1| oxygen-independent coproporphyrinogen III oxidase [Ferrimonas
           balearica DSM 9799]
          Length = 456

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 35/236 (14%), Positives = 77/236 (32%), Gaps = 21/236 (8%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C K C +C         I+R   +       L         L           G  G   
Sbjct: 61  CHKLCYYC----GCNKIITRHPHKADQYLDYLEREIKNRAPLFADYTVTQMHWG--GGTP 114

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL-------MPYLHLPVQSG 298
           TF      +  + GL++  +  ++  + S  +     +L+ +          + + VQ  
Sbjct: 115 TF-LNHEQIRRLTGLLKQHFNFANEGEFSIEIDPREIELETVDVLKEVGFNRISVGVQDF 173

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           +  + K++NR         ++   R      + + D I G P +T ++F+ T++ +  + 
Sbjct: 174 NKDVQKAVNREQDEQFIFDLVKYAREQGFQ-STNVDLIYGLPHQTPENFQETLERIKALS 232

Query: 359 YAQAFSFKYSPRLGTPGSN---MLEQVDENVKAERLLCLQKKLREQQVSFNDACVG 411
             +   F Y+       +      E +      ++L  L+  +           +G
Sbjct: 233 PDRLSIFNYAHLPHRFAAQRKIHEEDLPSP--QQKLKILENSINTLTGEGYQ-FIG 285


>gi|291524426|emb|CBK90013.1| Coproporphyrinogen III oxidase and related Fe-S oxidoreductases
           [Eubacterium rectale DSM 17629]
          Length = 531

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 43/201 (21%), Positives = 69/201 (34%), Gaps = 18/201 (8%)

Query: 174 RGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNV- 232
            G + ++ I   C   C +C          S  L    +     +D    EI    Q   
Sbjct: 206 NGYSLYIGIPF-CPSTCAYCSFT-------SYPLGVWKNRVDDYLDALEKEIDYTAQKFY 257

Query: 233 ----NAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR----YTTSHPRDMSDCLIKAHGDL 284
               N+    G      + + L   + +IK    L+    +T    R  S    K     
Sbjct: 258 HKKLNSIYIGGGTPTTLSPAQLDRLIRKIKCSFDLKDCLEFTVEAGRPDSITREKLLALK 317

Query: 285 DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETD 344
              +  + +  Q+   + L  + R HT  +  Q     R +  D  I+ D I+G P ET 
Sbjct: 318 KNGISRISVNPQTMKQQTLDIIGRHHTVDDTIQSFKLARELGFD-NINMDLIMGLPEETL 376

Query: 345 DDFRATMDLVDKIGYAQAFSF 365
           DD R TM+LV ++        
Sbjct: 377 DDVRHTMELVKELAPDNVTIH 397


>gi|293401527|ref|ZP_06645670.1| HAM1 protein [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291305165|gb|EFE46411.1| HAM1 protein [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 752

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 47/287 (16%), Positives = 107/287 (37%), Gaps = 30/287 (10%)

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVV---VGPQTYYRLPELL 140
           +  I+ +     +   DL ++V G     E  ++L +   V+ +    G ++ +    +L
Sbjct: 68  IEIIKAVIRLLKETNPDLHILVGGPEVSYESYDLLEQ--GVDAISIGEGEKSVWEYIAML 125

Query: 141 ERARFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTA-----------FLTIQEGCDK 188
           E     +   + T       ++R+++            A           +L    GC  
Sbjct: 126 EEESPHEVEGIYTKAFPNKNYQRVALSWLETLANPYFLAMDSQQMANRYFYLETSRGCPY 185

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS 248
            C++C+    R      S+  V++  +++ ++ V ++ LL +  NA   + L   +    
Sbjct: 186 GCSYCLSSADR-CVRMFSIDYVMEILKQIANSDVKQVKLLDRTFNADPKRALRIARYINQ 244

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY-LHLPVQSGSDRILKSMN 307
           +    + + +              +S+ L++       +  +   + VQS   + L+S+ 
Sbjct: 245 NCKNQIFQFE---------VVAETLSEELLEFFTKEADVTRFRFEIGVQSFHAKTLQSVG 295

Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           R        Q+I R+R       +  D I G P E    FR + +++
Sbjct: 296 RIQNNERLHQVIKRMREA--GCILHVDLIAGLPYEDLPTFRQSFNML 340


>gi|168215663|ref|ZP_02641288.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Clostridium perfringens NCTC 8239]
 gi|182382175|gb|EDT79654.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Clostridium perfringens NCTC 8239]
          Length = 377

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 37/245 (15%), Positives = 90/245 (36%), Gaps = 24/245 (9%)

Query: 186 CDKFCTFCVVPYTRGI--EISRSLSQVVDEA---RKLIDNGVCEITLLGQNVNAWRGKGL 240
           C + C +C  P            +  +  E    R+  +N       +G    +      
Sbjct: 13  CAQKCLYCDFPSFARKDHLRKAYIEALNKEIISLREKHNNLEINTIFIGGGTPSVLEADE 72

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTT-SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
                    LL  ++++     + Y+   +P ++++  ++        +  + + +Q+  
Sbjct: 73  ------LECLLKEVAKLNMAKDIEYSMECNPGNLTEEKLEVMKKYG--VNRISMGLQAKQ 124

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
           D +LK + R H    +++     + V  +  I+ D + G P +  +++  T+  +  +  
Sbjct: 125 DNLLKGLGRIHNYKTFKENFLLAKKVGFN-NINVDLMFGLPNQRLNEWEETLREIISLEP 183

Query: 360 AQAFSFKYSPRLGTPGSNMLE----QVDENVKAERLLCLQKKLREQ----QVSF-NDACV 410
           A   ++      GT   N+ E    ++    +  ++  L KK+ E+    Q    N A  
Sbjct: 184 AHISAYSLIIEEGTAFYNLYENDKLKLPTEEEERKMYHLAKKILEENGFNQYEISNYAKE 243

Query: 411 GQIIE 415
           G+   
Sbjct: 244 GKECR 248


>gi|71065310|ref|YP_264037.1| lipoyl synthase [Psychrobacter arcticus 273-4]
 gi|123775618|sp|Q4FTQ5|LIPA_PSYA2 RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|71038295|gb|AAZ18603.1| putative lipoic acid synthetase [Psychrobacter arcticus 273-4]
          Length = 347

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 35/208 (16%), Positives = 68/208 (32%), Gaps = 12/208 (5%)

Query: 161 ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN 220
           E  +  +       G   F+ + + C + C FC V + R  E+     +    A  +   
Sbjct: 78  EEAACPNLPQCFADGTATFMIMGDICTRRCPFCDVGHGRPNEL--DKDEPRHTAETIQGL 135

Query: 221 GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKA 280
           G+    +   +    R    DG    F ++L     +     +       R   D  +  
Sbjct: 136 GLKYAVITSVD----RDDLKDGGAAHFVEVLNESRALSPNCLIEILVPDFRGRMDIALDL 191

Query: 281 HGDL-DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGF 339
             +    +  +    V     R+ K+            ++   +  RPDIA    F+VG 
Sbjct: 192 LTETAPDVFNHNIETV----PRLYKAFRPGSDYQHSLDLLKIYKERRPDIATKCGFMVGL 247

Query: 340 PGETDDDFRATMDLVDKIGYAQAFSFKY 367
            GET+++    +D +           +Y
Sbjct: 248 -GETEEEIYKLLDDLKAHNVDMITVGQY 274


>gi|163942689|ref|YP_001647573.1| lipoyl synthase [Bacillus weihenstephanensis KBAB4]
 gi|229014161|ref|ZP_04171282.1| Lipoyl synthase [Bacillus mycoides DSM 2048]
 gi|229135802|ref|ZP_04264572.1| Lipoyl synthase [Bacillus cereus BDRD-ST196]
 gi|226781785|sp|A9VNX6|LIPA_BACWK RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|163864886|gb|ABY45945.1| lipoic acid synthetase [Bacillus weihenstephanensis KBAB4]
 gi|228647668|gb|EEL03733.1| Lipoyl synthase [Bacillus cereus BDRD-ST196]
 gi|228747115|gb|EEL96997.1| Lipoyl synthase [Bacillus mycoides DSM 2048]
          Length = 298

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 36/214 (16%), Positives = 79/214 (36%), Gaps = 13/214 (6%)

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           ++V ++ +  +I +    RK     F+ +   C + C FC V      E+   L +    
Sbjct: 37  HTVCEEAKCPNIHECWAVRK--TATFMILGAVCTRACRFCAVKTGLPTEL--DLQEPERV 92

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
           A  ++  G+  + +        R    DG    F++ + ++        +    S    +
Sbjct: 93  ADSVVQMGLKHVVITAV----ARDDLKDGGAAVFAETVRAVRRENPFTSIEVLPSDMGGV 148

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
            + L         ++ +    V+  S+R+      ++      + + R + ++PDI   S
Sbjct: 149 EENLKMLMDAKPDILNHNIETVRRLSNRV--RARAKYDRS--LEFLRRAKEMQPDIPTKS 204

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
             ++G  GET +D    MD +           +Y
Sbjct: 205 SIMLGL-GETREDLIEAMDDLRANNVDILTLGQY 237


>gi|327273602|ref|XP_003221569.1| PREDICTED: lipoyl synthase, mitochondrial-like [Anolis
           carolinensis]
          Length = 384

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 34/187 (18%), Positives = 68/187 (36%), Gaps = 17/187 (9%)

Query: 186 CDKFCTFCVVPYTRGIEISRSL---SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG 242
           C + C FC V        S       +  + A+ + + G+  + L   +    R    DG
Sbjct: 149 CTRGCRFCSVKTA----KSPPPLDPDEPFNTAKAISEWGLDYVVLTSVD----RDDIPDG 200

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIK-AHGDLDVLMPYLHLPVQSGSDR 301
               F+  +  L +I   + +   T   R     + + A   LDV    +    +   + 
Sbjct: 201 GAAHFAKTVSHLKKINPKILVECLTPDFRGDLKAVEEVALSGLDVYAHNVETVPELQRNV 260

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
                + R    +   ++   + V+PD+   +  ++G  GETD+   AT+ L+ +     
Sbjct: 261 R----DPRANFDQSLSVLKHAKKVQPDVVSKTSIMLGL-GETDEQIYATLKLLREADVDC 315

Query: 362 AFSFKYS 368
               +Y 
Sbjct: 316 LTLGQYM 322


>gi|323335421|gb|EGA76707.1| Lip5p [Saccharomyces cerevisiae Vin13]
          Length = 414

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 87/235 (37%), Gaps = 16/235 (6%)

Query: 167 DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEIT 226
            GG ++ +     + + + C + C FC V   R       +    + A  +   G+  + 
Sbjct: 162 WGGKDKSKATATIMLLGDTCTRGCRFCSVKTNRTPSKPDPME-PENTAEAIKRWGLGYVV 220

Query: 227 LLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV 286
           L   +    R   +DG     ++ +  + + K    L  T S        ++       +
Sbjct: 221 LTTVD----RDDLVDGGANHLAETVXKI-KQKAPNTLVETLSGDFRGDLKMVDIMAQCGL 275

Query: 287 -LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDD 345
            +  +    V+S +  +     RR T  +   +++R ++  P +   +  ++G  GETD+
Sbjct: 276 DVYAHNLETVESLTPHVRD---RRATYRQSLSVLERAKATVPSLITKTSIMLGL-GETDE 331

Query: 346 DFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLRE 400
               T+  +  I        +Y  R     +    +V E VK E+    +++  E
Sbjct: 332 QITQTLKDLRNIQCDVVTFGQYM-RP----TKRHMKVVEYVKPEKFDYWKERALE 381


>gi|318076113|ref|ZP_07983445.1| coproporphyrinogen III oxidase [Streptomyces sp. SA3_actF]
          Length = 413

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 46/241 (19%), Positives = 85/241 (35%), Gaps = 25/241 (10%)

Query: 186 CDKFCTFCVV-PYTRGIEI-------SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG 237
           C   C +C    YT            SR      + A  L         +LG++    R 
Sbjct: 42  CASRCGYCDFNTYTASELRGTGGVLASRD-----NYADTLAQEIRLARRVLGEDPRPART 96

Query: 238 KGLDGEKCTF---SDLLYSLSEIK---GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL 291
               G   T    +DL+  L+ ++   GL      T+     S          +     +
Sbjct: 97  VFFGGGTPTLLPAADLVRMLAAVRDEFGLAPDAEVTTEANPESVDPAYLETLREGGFNRI 156

Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351
              +QS    +L+ ++R HT       +   R+      ++ D I G PGE+D D+ A++
Sbjct: 157 SFGMQSAKPHVLRVLDRNHTPGRPEACVAEARAA-GFAHVNLDLIYGTPGESDADWHASL 215

Query: 352 DLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ-----VDENVKAERLLCLQKKLREQQVSFN 406
           +     G     ++      GT  +  + +      D++  A+R L   + L +   S+ 
Sbjct: 216 EAAIGAGPDHVSAYALIVEEGTGLARRIRRGEIPMTDDDEHADRYLIADELLAKAGFSWY 275

Query: 407 D 407
           +
Sbjct: 276 E 276


>gi|318061217|ref|ZP_07979938.1| coproporphyrinogen III oxidase [Streptomyces sp. SA3_actG]
          Length = 410

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 46/241 (19%), Positives = 85/241 (35%), Gaps = 25/241 (10%)

Query: 186 CDKFCTFCVV-PYTRGIEI-------SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG 237
           C   C +C    YT            SR      + A  L         +LG++    R 
Sbjct: 39  CASRCGYCDFNTYTASELRGTGGVLASRD-----NYADTLAQEIRLARRVLGEDPRPART 93

Query: 238 KGLDGEKCTF---SDLLYSLSEIK---GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL 291
               G   T    +DL+  L+ ++   GL      T+     S          +     +
Sbjct: 94  VFFGGGTPTLLPAADLVRMLAAVRDEFGLAPDAEVTTEANPESVDPAYLETLREGGFNRI 153

Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351
              +QS    +L+ ++R HT       +   R+      ++ D I G PGE+D D+ A++
Sbjct: 154 SFGMQSAKPHVLRVLDRNHTPGRPEACVAEARAA-GFAHVNLDLIYGTPGESDADWHASL 212

Query: 352 DLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ-----VDENVKAERLLCLQKKLREQQVSFN 406
           +     G     ++      GT  +  + +      D++  A+R L   + L +   S+ 
Sbjct: 213 EAAIGAGPDHVSAYALIVEEGTGLARRIRRGEIPMTDDDEHADRYLIADELLAKAGFSWY 272

Query: 407 D 407
           +
Sbjct: 273 E 273


>gi|260941588|ref|XP_002614960.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
 gi|306755824|sp|C4YA37|LIPA_CLAL4 RecName: Full=Lipoyl synthase, mitochondrial; AltName: Full=Lipoate
           synthase; Short=LS; Short=Lip-syn; AltName: Full=Lipoic
           acid synthase; Flags: Precursor
 gi|238851383|gb|EEQ40847.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
          Length = 391

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 56/285 (19%), Positives = 110/285 (38%), Gaps = 22/285 (7%)

Query: 156 VEDKFERLSIVDGGYNRKRGVTA-FLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEA 214
           V ++ +  +I +    +K   TA  + + + C + C FC V  +R       +    + A
Sbjct: 119 VCEEAKCPNISECWGGKKSEATATIMLLGDTCTRGCRFCSVKTSRTPAKPDPME-PENTA 177

Query: 215 RKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPR-DM 273
             +   G+  + L   +    R    DG     ++ +  + +    + +       R D+
Sbjct: 178 EAISRWGLGYVVLTTVD----RDDLADGGAAHLAETVRLIKQKAPQILVEVLGGDFRGDL 233

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
           + C   A   LDV    L   V++ +  +     RR T  +   I++R +  +P +   +
Sbjct: 234 TSCDTLAVSGLDVYAHNLET-VEALTPHVRD---RRATYRQSLSILERAKQAKPSLITKT 289

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLC 393
             ++GF GETD+    T+  +  IG       +Y  R     +    +V E V+ E+   
Sbjct: 290 SLMLGF-GETDEQIMQTLRDLRGIGCDVVTFGQYM-RP----TKRHMKVVEYVRPEKFDY 343

Query: 394 LQKKLREQQVSFNDA--CVGQII---EVLIEKHGKEKGKLVGRSP 433
            ++   E    +  +   V       E  IE   +++   VG SP
Sbjct: 344 WKEVALEMGFLYVASGPLVRSSYKAGEAFIENVLRKRKHNVGDSP 388


>gi|182434364|ref|YP_001822083.1| putative Fe-S oxidoreductase [Streptomyces griseus subsp. griseus
           NBRC 13350]
 gi|178462880|dbj|BAG17400.1| putative Fe-S oxidoreductase [Streptomyces griseus subsp. griseus
           NBRC 13350]
          Length = 622

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 51/281 (18%), Positives = 82/281 (29%), Gaps = 38/281 (13%)

Query: 115 EEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKR 174
           +E     P V  +     Y R    +E        VD D        RL+  +       
Sbjct: 297 QERFAELPGVGSLF---LYDRHGRRIESIPLSGTPVDGDRLPYIDVTRLTHENRFPVFGH 353

Query: 175 GVTAFLTIQEGCDKFCTFC-----VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLG 229
             TA +    GC   C+FC        Y +     RS   V+ E R   D G  E     
Sbjct: 354 RRTAQIMACLGCKYSCSFCHESADAFLYEQPKIRQRSPCHVMGEIRLRRDQGF-EAVFFD 412

Query: 230 QNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP--RDMSDCLIKAHGDLDVL 287
            +            +   +D L  L ++    R           D+   L++        
Sbjct: 413 DSTFTQ-------NRRWLADFLTLLEDLTSDHRPLEWGCQTTVNDVDRDLLRRMA--GAG 463

Query: 288 MPYLHLPVQSGSDRILK-------SMNRRHT--AYEYRQIIDRIRSVRPDIAISSDFIVG 338
             Y++  V+S      +        +    T     +R +    R     I + +    G
Sbjct: 464 CSYVYFGVESAEPDTERVQKVRQLLLVSPATDWTDRFRDVAHWCREA--GIRVGTSLQFG 521

Query: 339 FPGETDDDFRATMDLVDKIGYAQAFSFKY------SPRLGT 373
             GE+ +    T+DLV ++                SP  GT
Sbjct: 522 L-GESPEQRLRTLDLVAELHRDGCIPDGCVALNVNSPYPGT 561


>gi|15606957|ref|NP_214339.1| hypothetical protein aq_1958 [Aquifex aeolicus VF5]
 gi|2984211|gb|AAC07741.1| putative protein [Aquifex aeolicus VF5]
          Length = 372

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 58/310 (18%), Positives = 107/310 (34%), Gaps = 28/310 (9%)

Query: 139 LLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRK---RGVTAFLTIQEGCDKFCTFCVV 195
           +LE+    K   +           L ++ G + R      +   LT   GC   C +C +
Sbjct: 5   VLEKLTEQKESPEYMQISWAAAMTLGLIPGQFYRDTKLSCINTLLTYPSGCHATCAYCGL 64

Query: 196 PYTRGIEISR--------SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTF 247
              R IE S+           +  +   +    G  E   + Q  +    +     K   
Sbjct: 65  QKAREIEYSKKNFIRVEWPTVKTDEIIERTKQVGHAERLCISQITHPRAIRDT---KYIL 121

Query: 248 SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307
             +   L +   +  L   T H  +  +   +   +   +      P +       + MN
Sbjct: 122 EKVHRELGDKIFISILLNATGHTYEDLEDYKRLGAETLTVALDAATP-ELFEKLRGRPMN 180

Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
             H    Y ++++    +  D  + +  IVG  GET+++   T+  V  +G  +   F +
Sbjct: 181 SPHRWETYWKVLEWCADIMGDGHVGAHLIVGL-GETEEEMVRTIQRVRDLG-GRTHLFSF 238

Query: 368 SPRLGTPGSNMLEQVD------ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKH 421
            P  G   S M ++          V+  R L      R + + FN+   GQII+  + K 
Sbjct: 239 WPEEG---SLMEKEKPCPAPQYRRVQMARYLIDNGLARYEDMKFNEK--GQIIDWGVSKE 293

Query: 422 GKEKGKLVGR 431
             E+    GR
Sbjct: 294 VFEEIFWSGR 303


>gi|309780456|ref|ZP_07675205.1| oxygen-independent coproporphyrinogen III oxidase [Ralstonia sp.
           5_7_47FAA]
 gi|308920784|gb|EFP66432.1| oxygen-independent coproporphyrinogen III oxidase [Ralstonia sp.
           5_7_47FAA]
          Length = 494

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 69/193 (35%), Gaps = 14/193 (7%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C   C +C        + SRS   V   AR++         L       W      G   
Sbjct: 85  CANLCYYCGCNKVITKDRSRSARYVETLAREMAMVASQIGPLRRVTQLHW------GGGT 138

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL-------DVLMPYLHLPVQSG 298
                   +  +    R  +  +   ++S  L   H D        ++      L +Q  
Sbjct: 139 PTFLAHDEMRAVMAATREHFDLATDGEISVELDPRHADDATLEVLAEIGFNRASLGIQDF 198

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
              + ++++R  +  E R+++D  R +  + +IS D I G P +  + F AT+D V ++ 
Sbjct: 199 DPDVQRAVHRIQSVEETRRVVDTARRLGFE-SISFDLIYGLPYQRTETFNATLDRVLEMA 257

Query: 359 YAQAFSFKYSPRL 371
             +   + Y+   
Sbjct: 258 PDRLSVYSYAHLP 270


>gi|317131321|ref|YP_004090635.1| Radical SAM domain protein [Ethanoligenens harbinense YUAN-3]
 gi|315469300|gb|ADU25904.1| Radical SAM domain protein [Ethanoligenens harbinense YUAN-3]
          Length = 334

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 41/213 (19%), Positives = 70/213 (32%), Gaps = 20/213 (9%)

Query: 177 TAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV---VDEARKLIDNGVCEITLLGQNVN 233
            AF     GC   C+FC      G     S + V   +   R+ + +   +       V 
Sbjct: 7   VAFFVPHLGCAHACSFCDQRSIAGQAAPPSPADVAGTLARVREQMGSRSRDA-----EVA 61

Query: 234 AWRGKGLDGEKCTFSDLLYSLSEIKGL-----VRLRYTTSHPRDMSDCLIKAHGDLDVLM 288
            + G      +     LL +++   G      +R+        D    L++AHG     +
Sbjct: 62  FFGGSFTAIPRRQMLALLEAVAPFLGADGFSGIRVSTRPDAVDDDVLALLRAHG-----V 116

Query: 289 PYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFR 348
             + L  QS  D +L    R HTA + R     +R  R   ++    + G PG+     R
Sbjct: 117 TSIELGAQSMDDAVLCRNGRGHTARQVRDAA--LRVGRAGFSLGLQMMTGLPGDGPAGAR 174

Query: 349 ATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
            T   +  +       +      GT  +     
Sbjct: 175 RTARELAALHPDTVRIYPALVLRGTRMAAWWAD 207


>gi|75908016|ref|YP_322312.1| cobalamin B12-binding [Anabaena variabilis ATCC 29413]
 gi|75701741|gb|ABA21417.1| Cobalamin B12-binding protein [Anabaena variabilis ATCC 29413]
          Length = 529

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 47/355 (13%), Positives = 109/355 (30%), Gaps = 40/355 (11%)

Query: 48  FFSQGYERVNSMDDA--DLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVV 105
              +    V   + A  D+++ +   +      +    L +I+  K          LV V
Sbjct: 50  LVDRNIRPVTEEEWAWADIVIFSAMIV------QKQDLLEQIQEAKQRGK------LVAV 97

Query: 106 AGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSI 165
            G    +   ++  ++   + ++  +    LP  +E  + G+       + +       +
Sbjct: 98  GGPYPTSTPSDV--QNVGADFLILDEGEITLPMFVEAVQRGETSGTFRTAEKPDVTSTPV 155

Query: 166 VDGGYNRKRGV-TAFLTIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVC 223
                          +    GC   C FC +    G +  +++ +Q++ E   L + G  
Sbjct: 156 PRFDLLELDAYDMMSVQFSRGCPFQCEFCDIIVLYGRKPRTKTPAQLLAELDYLYELGWR 215

Query: 224 EITLLGQNVNAWRGKGLDGEKCTFSDLLYSL----SEIKGLVRLRYTTSHPRDMSDCLIK 279
               +  +          G K     LL  L    +E +   +     S        ++ 
Sbjct: 216 RGVFMVDD-------NFIGNKRNVKLLLKELKVWMAEHQYPFKFDTEASVDLAQDQEMLD 268

Query: 280 AHGDLDVLMPYLHLPVQSGSDRILKSMNRR-HTAYEYRQIIDRIRSVRPDIAISSDFIVG 338
              +       + L +++  +  L+   +  +T       +  I  ++  +   + FI+G
Sbjct: 269 LMVESG--FSAVFLGIETPDEDSLQLTKKFQNTRSSLTDAVQTI--IKAGLRPMAGFIIG 324

Query: 339 FPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLC 393
           F GE        +   ++ G              T   + L+      K  RL  
Sbjct: 325 FDGEKAGAGDRIVRFAEQAGIPSTTFAMLQALPNTALWHRLK------KEGRLRE 373


>gi|320157164|ref|YP_004189543.1| lipoate synthase [Vibrio vulnificus MO6-24/O]
 gi|319932476|gb|ADV87340.1| lipoate synthase [Vibrio vulnificus MO6-24/O]
          Length = 321

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 34/211 (16%), Positives = 68/211 (32%), Gaps = 12/211 (5%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V    G  +     +    A+ + D  +  + +   +    R    DG   
Sbjct: 94  CTRRCPFCDV--AHGRPLPPEAEEPTKLAKTIADMKLKYVVITSVD----RDDLRDGGAK 147

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
            F+D    +      +R+       R   D  + A  D     P +       + R+ + 
Sbjct: 148 HFADCNREIRAQSPHIRIETLVPDFRGRMDVALDALKDNP---PDVFNHNLETAPRLYRK 204

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           +           ++ + +   PD+   S  ++G  GET ++    +  +   G       
Sbjct: 205 VRPGANYQWSLDLLKKFKEQHPDVPTKSGLMMGL-GETKEEIVEVLKDLRAHGVTMLTLG 263

Query: 366 KYSP--RLGTPGSNMLEQVDENVKAERLLCL 394
           +Y    R   P    +   + +   E  L L
Sbjct: 264 QYLAPSRHHLPVERYVPPAEFDELKEIALEL 294


>gi|283851955|ref|ZP_06369231.1| oxygen-independent coproporphyrinogen III oxidase [Desulfovibrio
           sp. FW1012B]
 gi|283572679|gb|EFC20663.1| oxygen-independent coproporphyrinogen III oxidase [Desulfovibrio
           sp. FW1012B]
          Length = 375

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 40/202 (19%), Positives = 70/202 (34%), Gaps = 21/202 (10%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEK 244
           C   C +C         +SR +   + E          E+   G+ +   R + +  G  
Sbjct: 10  CRGKCRYCS-------FVSRPMD--MAEVEVFAAALPLEMRHWGKKLGRPRVETVYFGGG 60

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHG----DLDVLMPY----LHLPVQ 296
                  ++LS I   +   +      + +             L  L+ Y    L L VQ
Sbjct: 61  TPSLLPPWALSRIIPEIGRHFDLDPAVEWTFEANPDSALDGQYLKSLLKYGVNRLSLGVQ 120

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSV-RPDIAISSDFIVGFPGETDDDFRATMDLVD 355
           S SD  L+ + R H A          R V   +I++  DFI G PG+ +  +  T+ +  
Sbjct: 121 SLSDTDLRFLGRPHDAAGAVAAYGLARQVGFKNISL--DFIWGLPGQREAAWLETLKVAV 178

Query: 356 KIGYAQAFSFKYSPRLGTPGSN 377
            +       +  +   GTP + 
Sbjct: 179 NLRPEHLSCYGLTVEPGTPLAE 200


>gi|329941292|ref|ZP_08290571.1| coproporphyrinogen III oxidase [Streptomyces griseoaurantiacus
           M045]
 gi|329299823|gb|EGG43722.1| coproporphyrinogen III oxidase [Streptomyces griseoaurantiacus
           M045]
          Length = 460

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 41/212 (19%), Positives = 71/212 (33%), Gaps = 38/212 (17%)

Query: 186 CDKFCTFC----VVPYT----------RGIEISRSLSQVVDEARKLIDNGVCEITLLGQN 231
           C   C FC     +P +          R   +     ++ +   +L + G     L    
Sbjct: 64  CRSKCHFCDWVTEIPTSELLLTETDQPRRRYVDALCHEITERGSRLTEAGYRPTIL---- 119

Query: 232 VNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY---------TTSHPRDMSDCLIKAHG 282
                     G        L  +S +   +R  +         +T      +    K   
Sbjct: 120 --------YWGGGTASILSLDEISRVGAALRRAFPALGGELLESTIECSPETLEPEKLAA 171

Query: 283 DLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV-RPDIAISSDFIVGFPG 341
             ++    L   VQS  D  L+++ R H A++ R I+ + R     DI+I  D I GFPG
Sbjct: 172 FREIGFRRLSSGVQSFDDARLRTLGRSHDAHQARTIVQQAREAGFEDISI--DLICGFPG 229

Query: 342 ETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
           +   + R  + +   +       + Y P  GT
Sbjct: 230 QPSAETREAVRVALDLPLTHVALYPYRPAHGT 261


>gi|218888069|ref|YP_002437390.1| radical SAM protein [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218759023|gb|ACL09922.1| Radical SAM domain protein [Desulfovibrio vulgaris str. 'Miyazaki
           F']
          Length = 771

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 51/258 (19%), Positives = 91/258 (35%), Gaps = 29/258 (11%)

Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSLS 208
           +D  Y++                +  +   +T   GC   C+FC +   +G  I SRS  
Sbjct: 352 MDALYALPFARRAHPSHREPVPAEEMIRTSITTHRGCGGGCSFCSLALHQGRRIASRSRG 411

Query: 209 QVVDEARKLIDNGVCEITLL---GQNVNAWR-GKGLDGEKCTFS---------------- 248
            V+DEAR+L D      ++    G + N W+    LD  +C  +                
Sbjct: 412 SVLDEARRLNDMERFNGSVSDVGGPSANMWQARCTLDPARCRRASCMHPRVCPGFAVDQS 471

Query: 249 ---DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMP--YLHLPVQSGSDRIL 303
              +LL ++    G+  +R  +    D++     A     +      L +  +   D +L
Sbjct: 472 EAVELLRAVRATPGVRHVRVASGVRFDLALRDADALRAYTMEFTGGQLKVAPEHICDGVL 531

Query: 304 KSMNRRHTA--YEYR-QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
             M +   A    +     D   +   +  +    +  FPG TDDD R     +   G++
Sbjct: 532 DLMRKPGLAVFERFLTAFADHSTAAGKEQYVVPYLLSAFPGCTDDDMRTLSRWLAARGWS 591

Query: 361 QAFSFKYSPRLGTPGSNM 378
                 + P  GT  + M
Sbjct: 592 PRQVQCFIPTPGTVATAM 609


>gi|39998153|ref|NP_954104.1| radical SAM domain-containing protein [Geobacter sulfurreducens
           PCA]
 gi|39985099|gb|AAR36454.1| radical SAM domain protein [Geobacter sulfurreducens PCA]
          Length = 563

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 41/180 (22%), Positives = 67/180 (37%), Gaps = 17/180 (9%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
           + +  GC + C FC   +       RSL ++  +A + +      I L+G  V+  R  G
Sbjct: 250 MEVSRGCPRGCRFCAAGFIYFPYRQRSLDELKRQAVEGLARRGK-IGLVGAAVSDHRDIG 308

Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
                    +L   + E  G V +        D    +I+           + L  + GS
Sbjct: 309 ---------ELCRFILEQGGKVSVSSLRIDRLDDG--MIEVLKASGH--KTVALAPEGGS 355

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDI-AISSDFIVGFPGETDDDFRATMDLVDKIG 358
            R+   + +  T  +     D +  +  DI  +   FI+G P ET DD      LV KI 
Sbjct: 356 QRMRDLVRKNLTEEQILAACDLL--IGHDILNLKLYFIIGLPTETMDDLEEMTALVGKIR 413


>gi|328472501|gb|EGF43364.1| lipoyl synthase [Vibrio parahaemolyticus 10329]
          Length = 321

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 28/182 (15%), Positives = 60/182 (32%), Gaps = 10/182 (5%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V    G  +     +    AR + D  +  + +   +    R    DG   
Sbjct: 94  CTRRCPFCDV--AHGRPLPPEAEEPQKLARTIADMKLKYVVITSVD----RDDLRDGGAQ 147

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
            F+D    +  +   +++       R   D  +    D     P +       + R+ + 
Sbjct: 148 HFADCNREIRALNPDIKIETLVPDFRGRMDVALDLMKDNP---PDVFNHNLETAPRLYRK 204

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
                      +++ + +   PD+   S  ++G  GET ++    +  +   G       
Sbjct: 205 ARPGANYKWSLELLKKFKEQHPDVPTKSGLMMGL-GETKEEIIEVLKDLRAHGVTMLTLG 263

Query: 366 KY 367
           +Y
Sbjct: 264 QY 265


>gi|153807965|ref|ZP_01960633.1| hypothetical protein BACCAC_02251 [Bacteroides caccae ATCC 43185]
 gi|149129574|gb|EDM20788.1| hypothetical protein BACCAC_02251 [Bacteroides caccae ATCC 43185]
          Length = 619

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 48/276 (17%), Positives = 95/276 (34%), Gaps = 54/276 (19%)

Query: 151 DTDYSVEDKFERLSIVDGGYNR---KRGVTAFLTIQEGCDKFCTFCVVPYTRGIE-ISRS 206
           + D+S +  + RL        R      +   + I  GC   C FC +   +G   +SRS
Sbjct: 287 ELDHSFDLPYTRLPHPKYKGKRIPAYDMIKFSVNIHRGCFGGCAFCTISAHQGKFIVSRS 346

Query: 207 LSQVVDEARKLI---DNGVCEITLLGQNVNAWRGKGLDGEKCT----------------- 246
            + ++ E ++++   D       L G + N ++ KG D   C                  
Sbjct: 347 KASILKEVKEVMQLPDFKGYLSDLGGPSANMYQMKGKDEAICKKCKRPSCIHPKVCPNLN 406

Query: 247 -----FSDLLYSLSEIKGLVRLRY-----------------TTSHPRDMSDCLIKAHGDL 284
                  D+ +++  + G+ +                    T     + +  LI +H   
Sbjct: 407 SDHRPLLDIYHAVDALPGIKKSFIGSGVRYDLLLHQSKDTATNRSTAEYTRELIASH--- 463

Query: 285 DVLMPYLHLPVQSGSDRILKSMNRRH--TAYEYRQIIDRI-RSVRPDIAISSDFIVGFPG 341
             +   L +  +  SDR+L  M +        +++I DRI R       +   FI   PG
Sbjct: 464 --VSGRLKVAPEHTSDRVLSIMRKPSFEQFETFKKIFDRINREENLRQQLIPYFISSHPG 521

Query: 342 ETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
             ++D      +  ++ +       ++P   T  + 
Sbjct: 522 CKEEDMAELAVITKRLDFHLEQVQDFTPTPMTVATE 557


>gi|189423119|ref|YP_001950296.1| radical SAM protein [Geobacter lovleyi SZ]
 gi|189419378|gb|ACD93776.1| conserved hypothetical radical SAM protein [Geobacter lovleyi SZ]
          Length = 318

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 48/281 (17%), Positives = 94/281 (33%), Gaps = 42/281 (14%)

Query: 154 YSVEDKFERLSIVDGGYNRKRGV---TAFLTIQEG--CDKF--------CTFCVVPYTRG 200
           +S E     L I   G+  +R      + + +  G  C           C +C       
Sbjct: 4   FSSEHIHPDLRINSYGHYLRRRFGCRVSKVNVDAGFTCPNRDGSKGTGGCIYC------- 56

Query: 201 IEISRSLSQVVDEA--RKLIDNG--VCEITLLGQNVNAWRGKGLDGEKC--TFSDLLYSL 254
             +S S    + E    + +  G       L       +  K  +        ++L    
Sbjct: 57  NNVSFSPRDTLAEIPLEEQVTTGMAYHHRRLESDKFIVYFQKYTNTYASVGHLAELYQRA 116

Query: 255 SEIKGLVRLRYT--TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
             +  ++ +          D +  L+        +   L L +QS  D IL+ +NR H+ 
Sbjct: 117 LALPDVIGISVGTRPDCLTDEALELLTTLARDHYVC--LELGLQSADDAILEQINRGHSL 174

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI-GYAQAFSFKYSPRL 371
            ++   +   R+    + I +  I GFPGE  ++F  + DL+D +         +     
Sbjct: 175 DDFITAVK--RASGRGLDICAHLIYGFPGEQPEEFVKSADLLDSLSSITSVKLHQLHAVE 232

Query: 372 GTPGSNML-----EQVDEN----VKAERLLCLQKKLREQQV 403
           GT  + M      + +         A+ L  L  ++  Q++
Sbjct: 233 GTELAAMYRRGAFDPISLEQYVNTAADFLERLPSRISIQRL 273


>gi|18311018|ref|NP_562952.1| coproporphyrinogen III oxidase [Clostridium perfringens str. 13]
 gi|168208738|ref|ZP_02634363.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Clostridium perfringens B str. ATCC 3626]
 gi|168212927|ref|ZP_02638552.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Clostridium perfringens CPE str. F4969]
 gi|18145700|dbj|BAB81742.1| probable coproporphyrinogen III oxidase [Clostridium perfringens
           str. 13]
 gi|170712995|gb|EDT25177.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Clostridium perfringens B str. ATCC 3626]
 gi|170715484|gb|EDT27666.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Clostridium perfringens CPE str. F4969]
          Length = 377

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 37/245 (15%), Positives = 90/245 (36%), Gaps = 24/245 (9%)

Query: 186 CDKFCTFCVVPYTRGI--EISRSLSQVVDEA---RKLIDNGVCEITLLGQNVNAWRGKGL 240
           C + C +C  P            +  +  E    R+  +N       +G    +      
Sbjct: 13  CAQKCLYCDFPSFARKDHLRKAYIEALNKEIISLREKHNNLEINTIFIGGGTPSVLEADE 72

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTT-SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
                    LL  ++++     + Y+   +P ++++  ++        +  + + +Q+  
Sbjct: 73  ------LECLLKEVAKLNMAKDIEYSMECNPGNLTEEKLEVMKKYG--VNRISMGLQAKQ 124

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
           D +LK + R H    +++     + V  +  I+ D + G P +  +++  T+  +  +  
Sbjct: 125 DNLLKGLGRIHNYKTFKENFLLAKKVGFN-NINVDLMFGLPNQRLNEWEETLREIISLEP 183

Query: 360 AQAFSFKYSPRLGTPGSNMLE----QVDENVKAERLLCLQKKLREQ----QVSF-NDACV 410
           A   ++      GT   N+ E    ++    +  ++  L KK+ E+    Q    N A  
Sbjct: 184 AHISAYSLIIEEGTAFYNLYENDKLKLPTEEEERKMYHLAKKILEENGFNQYEISNYAKE 243

Query: 411 GQIIE 415
           G+   
Sbjct: 244 GKECR 248


>gi|147670011|ref|YP_001214829.1| radical SAM domain-containing protein [Dehalococcoides sp. BAV1]
 gi|146270959|gb|ABQ17951.1| Radical SAM domain protein [Dehalococcoides sp. BAV1]
          Length = 610

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 50/279 (17%), Positives = 106/279 (37%), Gaps = 31/279 (11%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGK 238
           + I  GC + C FC           R   +V+     ++DN G  EI+LL   ++     
Sbjct: 258 VEISRGCSRGCRFCSAGILYRPVRVRPAEEVITAVEGIMDNCGYDEISLLS--LSCSDYP 315

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
           G++G   T ++           + L   +      S  L+            L    ++ 
Sbjct: 316 GIEGLVKTLAEKYA-----DKHLALSLPSLRLTPDSVSLVNVLAGARK--SGLTFAPEAA 368

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPD--IAISSDFIVGFPGETDDDFRATMDLVDK 356
           S R+ + +N+  +     ++    R+       +    F++G P ETD+D  A   +V K
Sbjct: 369 SPRLQRVINKLTSEE---ELCATARTAFESGWTSFKMYFMIGLPTETDEDATAICQMVGK 425

Query: 357 I-----------GYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLRE--QQV 403
           +              +     Y P+  TP      Q+DE     R   +++ L+    ++
Sbjct: 426 VNALSRIAPGRRPQIRLSLASYVPKAHTP-FQWEAQLDEESLYRRADIVRQGLKRWGIKL 484

Query: 404 SFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
           S++D  +  ++E +  +  +  G+++  + W +    ++
Sbjct: 485 SWSDTRM-SLLEAVFSRGDRRLGRVI-YTAWQKGAKFDA 521


>gi|315633666|ref|ZP_07888956.1| lipoyl synthase [Aggregatibacter segnis ATCC 33393]
 gi|315477708|gb|EFU68450.1| lipoyl synthase [Aggregatibacter segnis ATCC 33393]
          Length = 320

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/214 (14%), Positives = 70/214 (32%), Gaps = 10/214 (4%)

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           + +    E  S  +       G   F+ +   C + C FC V    G  +     +    
Sbjct: 61  HGLHSVCEEASCPNLHECFNHGTATFMILGAICTRRCPFCDV--AHGKPLPPDPEEPRKL 118

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
           A  + D  +  + +   +    R    D     F+D +  +  +   +++       R  
Sbjct: 119 AETIQDMKLRYVVITSVD----RDDLPDRGAGHFADCVREIRALNPNIKIEILVPDFRGR 174

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
            +  ++   D     P +         R+ + +          +++   +++ P I   S
Sbjct: 175 IELALEKLKDNP---PDVFNHNLENVPRLYREIRPGADYEWSLRLLKEFKAMFPHIPTKS 231

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
             +VG  GET+++    M  +   G       +Y
Sbjct: 232 GLMVGL-GETNEEILEVMQDLRDHGVTMLTLGQY 264


>gi|197286714|ref|YP_002152586.1| coproporphyrinogen III oxidase [Proteus mirabilis HI4320]
 gi|194684201|emb|CAR45683.1| oxygen-independent coproporphyrinogen III oxidase [Proteus
           mirabilis HI4320]
          Length = 457

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 46/254 (18%), Positives = 93/254 (36%), Gaps = 32/254 (12%)

Query: 173 KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS-------QVVDEARKLIDNGVCEI 225
           +R ++ ++ I   C K C FC           ++         ++++ AR   +  V ++
Sbjct: 50  ERPLSLYIHIPF-CHKLCYFCGCNKIITRHKHKADEYLDVLEKEIINRARYFKNRKVTQM 108

Query: 226 TLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLD 285
                           G   TF D    +S +  L+R  +      ++S  +     +LD
Sbjct: 109 HW-------------GGGTPTFLD-KQQISRLVALLRQHFHFVENAELSIEIDPREIELD 154

Query: 286 VL-------MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVG 338
           V+          L + VQ  +  + + +NR         ++ R R V    + S D I G
Sbjct: 155 VIDHLHNEGFNRLSMGVQDFNKEVQQKVNREQDEAFIFSLVARAREVGFH-STSIDLIYG 213

Query: 339 FPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKK 397
            P +T + F  T+  V ++   +   F Y+       +   ++  D  +  E+L  LQ+ 
Sbjct: 214 LPKQTKESFAFTLKKVIELSPDRLSVFNYAHLPNLFAAQRKIKDEDLPLAEEKLEILQET 273

Query: 398 LREQQVSFNDACVG 411
           +     +     +G
Sbjct: 274 ITTLTTNGYQ-FIG 286


>gi|146296621|ref|YP_001180392.1| radical SAM domain-containing protein [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145410197|gb|ABP67201.1| Radical SAM domain protein [Caldicellulosiruptor saccharolyticus
           DSM 8903]
          Length = 341

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 36/210 (17%), Positives = 79/210 (37%), Gaps = 11/210 (5%)

Query: 173 KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNV 232
           K  +      Q GC   C FC      G +   ++ ++  +  + +          G++V
Sbjct: 2   KCRILPIFIPQYGCPFKCIFCNQKIISGEKEDVTVQRIKRQIEEGLSKNK------GEDV 55

Query: 233 N-AWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL 291
             A+ G             L  L+     ++    ++ P  +   ++    D +  +  +
Sbjct: 56  ELAYYGGNFTAIDIKMQQKLLELARSFENIKSIRISTRPDCIDKEILGFLKDYN--VKTV 113

Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351
            L +QS  D +L++  R HTA +  + I+ I+S   D  +    +VG P  T +    + 
Sbjct: 114 ELGIQSMFDDVLEASKRGHTAKDSVKAIELIKSF--DFLLGVQLMVGLPNSTPEKDIKSA 171

Query: 352 DLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +++ +     A  +       T  + M ++
Sbjct: 172 EILCRYQPNIARIYPTLVIEDTYLAEMYQK 201


>gi|310779300|ref|YP_003967633.1| Radical SAM domain protein [Ilyobacter polytropus DSM 2926]
 gi|309748623|gb|ADO83285.1| Radical SAM domain protein [Ilyobacter polytropus DSM 2926]
          Length = 342

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 42/238 (17%), Positives = 84/238 (35%), Gaps = 19/238 (7%)

Query: 174 RGVTAFLTIQE-GCDKFCTFCVVPYTRGIEISRSLSQ----VVDEARKLIDNGVCEITLL 228
           +     + I   GC   C FC      GIE   +L +    + D  + L      E+   
Sbjct: 2   KHYNIPVFISHFGCPNSCVFCNQKKITGIETDVTLDELEGIIEDYLKTLPKESRKEVAFF 61

Query: 229 GQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLM 288
           G       G  +D ++     +   +    GL+     ++ P  +S  ++    +    +
Sbjct: 62  GGTFT---GISIDLQRNYLEVVKRYIDR--GLIDGIRMSTRPDYISREILLMLKEYG--V 114

Query: 289 PYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFR 348
             + L VQS   ++L+   R ++  +  +    I+     I +    + G PG TD+   
Sbjct: 115 TTIELGVQSLDPKVLELSGRGYSPEKVYEASLMIKES--GINLGIQLMPGLPGSTDEKDF 172

Query: 349 ATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ---VDENVKA--ERLLCLQKKLREQ 401
            +   V  IG      +      GT    +  +   V   +K   ER++ +     ++
Sbjct: 173 ISAKKVVGIGPDMVRIYPTLVINGTQMEKLYYKGSFVPMTLKEAVERVVPIYALFEKE 230


>gi|269797767|ref|YP_003311667.1| radical SAM protein [Veillonella parvula DSM 2008]
 gi|269094396|gb|ACZ24387.1| Radical SAM domain protein [Veillonella parvula DSM 2008]
          Length = 399

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 43/211 (20%), Positives = 72/211 (34%), Gaps = 19/211 (9%)

Query: 175 GVTAFLTIQEGCDKFCTFCVVPYTRGIE-ISR-SLSQVVDEARKLI----DNGVCEITLL 228
           G+  F     GC   CTFC      G   IS  +   +    +  +    +    E+   
Sbjct: 5   GMIPFFIPHVGCPYVCTFCNQSRITGQSGISHLTPEYIQQTIKDYVGTKRNEKFWEVAFY 64

Query: 229 GQNVNAWRGKGLDGEKCTFSDLLYSLSE--IKGLVRLRYTTSHPRDMSDCLIKAHGDLDV 286
           G +  A      D +          L +  I G+ R         D +  L++++G    
Sbjct: 65  GGSFTAII---KDLQHKLLMPAYEMLQQGLIDGI-RCSTRPDAVGDEAITLLQSYG---- 116

Query: 287 LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDD 346
            +  + L VQS +D IL    R HTA E  + + R++    D+ +    + G  GET   
Sbjct: 117 -VKTVELGVQSMNDGILVDAKRGHTAQEVVEAVTRLKHR--DMTVGVQLLPGLKGETWQT 173

Query: 347 FRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
              T   V  +       +       T  + 
Sbjct: 174 IIETAIAVAALRPDFVRIYPVLVIENTELAE 204


>gi|150391223|ref|YP_001321272.1| radical SAM domain-containing protein [Alkaliphilus metalliredigens
           QYMF]
 gi|149951085|gb|ABR49613.1| Radical SAM domain protein [Alkaliphilus metalliredigens QYMF]
          Length = 449

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 47/318 (14%), Positives = 105/318 (33%), Gaps = 36/318 (11%)

Query: 80  VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL 139
             + +  I+       K   D  VVV G  A+   ++ +     ++ +V         ++
Sbjct: 71  YITHVEVIKGYGERIKKIKPDTTVVVGGVHAEVVPQDFVS--DFIDYIVEANPIKTFNQI 128

Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAF--------------LTIQEG 185
           +     G++ +   Y       + +     +  +  V  +              +    G
Sbjct: 129 IN--HPGEKDIQGTYQPGKTNVKETTFSYKFPARNKVAKYRNQYYYMFHNPCSLIKTSFG 186

Query: 186 CDKFCTFCVVPYTR-GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK 244
           C   C+FC       G   +RS+  V+ E + + +    EI ++  +      +      
Sbjct: 187 CPYNCSFCFCKEITDGKYYTRSIDSVIQELKGIPEQ---EIYIVDDDFLFSSQR------ 237

Query: 245 CTFSDLLYSLSEIKGLVR-LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
               +    L E     R L Y  +     ++ ++K   +    +  + + ++S     L
Sbjct: 238 --ILEFCQRLQEENIHKRFLVYGRADFIYKNESVMKTFKEAG--LRAVIVGLESFKKADL 293

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
              N+     E  + +  ++  R DI I   FI+     + +DF+     + K+      
Sbjct: 294 DKYNKGTNIIENEEAVKILK--RHDIEIYGTFILDMDF-SKEDFKDLYGWIKKLDLTFVN 350

Query: 364 SFKYSPRLGTPGSNMLEQ 381
               +P  GT      E+
Sbjct: 351 LQPLTPLPGTEIYESYEK 368


>gi|163782325|ref|ZP_02177323.1| lipoyl synthase [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882358|gb|EDP75864.1| lipoyl synthase [Hydrogenivirga sp. 128-5-R1-1]
          Length = 278

 Score = 61.1 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 37/223 (16%), Positives = 76/223 (34%), Gaps = 15/223 (6%)

Query: 175 GVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA 234
           G   F+ + + C + CTFC V     + +     +    A  +   G+  + +       
Sbjct: 41  GTATFMILGDRCTRGCTFCNVKRKHPLPV--DPEEPYRLAEAVKALGLRYVVITSVT--- 95

Query: 235 WRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP 294
            R    DG    F+  +  + E    VR+       R   + L +   +   ++ +    
Sbjct: 96  -RDDLPDGGSSHFARCVRVIREELPGVRVEVLIPDFRGSREALERVLAEGPDVLNHNVET 154

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           V+     +   +   +      +++   + + P I   S  IVGF    ++ F   M+ +
Sbjct: 155 VRRLYPEV--RIGSSYDRS--LRLLKESKEIAPQIPTKSALIVGFGESMEEIF-EAMEDL 209

Query: 355 DKIGYAQAFSFKY---SPRLGTPGSNMLEQVDENVKAERLLCL 394
             +        +Y   S R   P      + +  +  ER L L
Sbjct: 210 RGVDCDFLTVGQYYQPSLRHH-PVVKFYREEEFELIRERALQL 251


>gi|170782116|ref|YP_001710449.1| coproporphyrinogen III oxidase [Clavibacter michiganensis subsp.
           sepedonicus]
 gi|169156685|emb|CAQ01844.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Clavibacter michiganensis subsp. sepedonicus]
          Length = 407

 Score = 61.1 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 53/271 (19%), Positives = 87/271 (32%), Gaps = 25/271 (9%)

Query: 152 TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV-----PYTRGIEISRS 206
            D +  D     S  +G   R  GV   +     C   C +C       P  RG++ S  
Sbjct: 8   ADPAPADGLLPASAAEGADARAFGVYLHVPF---CRVRCGYCDFNTYTAPELRGVKQSDY 64

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK---GLVRL 263
            SQ V E R                   + G G         DL+  L  ++   G+   
Sbjct: 65  ASQAVQEVRFAGSALRESGVPARPASTVFLGGGTPTLLP-VEDLVRMLDAVRDTWGIAEG 123

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
              T+     S                +   +QS   R+L ++ R H       ++   R
Sbjct: 124 AEVTTEANPDSVDDAYLAALAAGGFTRVSFGMQSAVPRVLATLERTHDPARIAPVVRGAR 183

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN--MLEQ 381
           +    + +S D I G PGET DD+RA+++           ++      GT  +      +
Sbjct: 184 AA--GLEVSLDLIYGTPGETIDDWRASLEQAIAQEPDHLSAYALIVEPGTKLARQIRRGE 241

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQ 412
           V E           + L+       D  +G+
Sbjct: 242 VPEP---------DEDLQADMYELADRMLGE 263


>gi|170035952|ref|XP_001845830.1| lipoic acid synthase [Culex quinquefasciatus]
 gi|306755876|sp|B0WAU6|LIAS_CULQU RecName: Full=Lipoyl synthase, mitochondrial; AltName: Full=Lipoate
           synthase; Short=LS; Short=Lip-syn; AltName: Full=Lipoic
           acid synthase; Flags: Precursor
 gi|167878429|gb|EDS41812.1| lipoic acid synthase [Culex quinquefasciatus]
          Length = 380

 Score = 61.1 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 27/184 (14%), Positives = 62/184 (33%), Gaps = 11/184 (5%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V   R         +    A  +   G+  I L   +    R    DG   
Sbjct: 135 CTRGCRFCSVKTARAPP-PLDPDEPKKTASAIASWGLDYIVLTSVD----RDDLPDGGSN 189

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV-LMPYLHLPVQSGSDRILK 304
             ++ +  +      + +       R  +   I+      + +  +    V+S +  + +
Sbjct: 190 HIAETIREIKRQNPRIFVECLAPDFRG-NLDCIRTVATSGLDVYAHNIETVESLTPFV-R 247

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
                +      + +  ++ + P++   +  ++G  GETD+    TM  +  +G      
Sbjct: 248 DRRAEYRQS--LKCLASVKEINPNMVTKTSIMLGL-GETDEQVEQTMKDLRAVGVDCLTL 304

Query: 365 FKYS 368
            +Y 
Sbjct: 305 GQYM 308


>gi|93005574|ref|YP_580011.1| lipoyl synthase [Psychrobacter cryohalolentis K5]
 gi|123264685|sp|Q1QCS6|LIPA_PSYCK RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|92393252|gb|ABE74527.1| lipoic acid synthetase [Psychrobacter cryohalolentis K5]
          Length = 347

 Score = 61.1 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 35/208 (16%), Positives = 68/208 (32%), Gaps = 12/208 (5%)

Query: 161 ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN 220
           E  +  +       G   F+ + + C + C FC V + R  E+     +    A  +   
Sbjct: 78  EEAACPNLPQCFADGTATFMIMGDICTRRCPFCDVGHGRPNEL--DKDEPRHTAETIQGL 135

Query: 221 GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKA 280
           G+    +   +    R    DG    F ++L     +     +       R   D  +  
Sbjct: 136 GLKYAVITSVD----RDDLKDGGAMHFVEVLNESRALSPNCLIEILVPDFRGRMDIALDL 191

Query: 281 HGDL-DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGF 339
             +    +  +    V     R+ K+            ++   +  RPDIA    F+VG 
Sbjct: 192 LTETAPDVFNHNIETV----PRLYKAFRPGSDYQHSLDLLKIYKERRPDIATKCGFMVGL 247

Query: 340 PGETDDDFRATMDLVDKIGYAQAFSFKY 367
            GET+++    +D +           +Y
Sbjct: 248 -GETEEEIYKLLDDLKAHNVDMITVGQY 274


>gi|307724897|ref|YP_003904648.1| Radical SAM domain-containing protein [Thermoanaerobacter sp. X513]
 gi|307581958|gb|ADN55357.1| Radical SAM domain protein [Thermoanaerobacter sp. X513]
          Length = 349

 Score = 61.1 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 36/250 (14%), Positives = 78/250 (31%), Gaps = 32/250 (12%)

Query: 138 ELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKR--------GVTAFLTIQEGCDKF 189
           EL+E+      +   +       E  S +    +R R         +   +     C   
Sbjct: 9   ELIEKLETHHNIDKEELVTLLALEDPSKIYQAADRVRKKYVGDEVHLRGLIEFSNYCSNT 68

Query: 190 CTFCVVPYTRGIEI-----SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK 244
           C +C     RG             +++   +     G+  I L         G+    + 
Sbjct: 69  CFYC---GLRGPNRTIKRYRMEPEEILQCVKYGASVGLKTIVLQS-------GEDKYFKI 118

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304
            T   ++  + ++   V L       +D    L KA  D         L +++ +  + +
Sbjct: 119 TTLCKIIEEIKKLDIAVTLSIGELSTKDY-AELKKAGADR------YLLRIETTNKELYQ 171

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
            ++   +     + +  +R +     + +  +VG PG+T +     +    KI       
Sbjct: 172 KLHPGMSYENRVRCLMDLREL--GYEVGTGSLVGLPGQTLEMLAQDLIFFKKIDADMLGI 229

Query: 365 FKYSPRLGTP 374
             + P   TP
Sbjct: 230 GPFIPCENTP 239


>gi|237798415|ref|ZP_04586876.1| lipoyl synthase [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331021267|gb|EGI01324.1| lipoyl synthase [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 335

 Score = 61.1 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 35/215 (16%), Positives = 73/215 (33%), Gaps = 12/215 (5%)

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           + +    E  S  + G     G   F+ + + C + C FC V + R   +     +    
Sbjct: 75  HKLHSVCEEASCPNLGECFSGGTATFMIMGDICTRRCPFCDVGHGRPKAL--DADEPKSL 132

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI-KGLVRLRYTTSHPRD 272
           A  + D G+  + +   +    R    DG    F+D +  +  +  G+        +   
Sbjct: 133 AIAIADLGLKYVVITSVD----RDDLRDGGAQHFADCIREIRLLSPGVQLETLVPDYRGR 188

Query: 273 MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAIS 332
           M   L     +   +  +    V     R+ K+            ++ R + + P +   
Sbjct: 189 MDVALEITAAEPPDVFNHNLETV----PRLYKAARPGSDYQWSLTLLQRFKQMVPHVPTK 244

Query: 333 SDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           S  ++G  GETD++    M  + +         +Y
Sbjct: 245 SGLMLGL-GETDEEVIEVMQRMREHDIDMLTLGQY 278


>gi|300914977|ref|ZP_07132292.1| Radical SAM domain protein [Thermoanaerobacter sp. X561]
 gi|300888701|gb|EFK83848.1| Radical SAM domain protein [Thermoanaerobacter sp. X561]
          Length = 349

 Score = 61.1 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 36/250 (14%), Positives = 78/250 (31%), Gaps = 32/250 (12%)

Query: 138 ELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKR--------GVTAFLTIQEGCDKF 189
           EL+E+      +   +       E  S +    +R R         +   +     C   
Sbjct: 9   ELIEKLETHHNIDKEELVTLLALEDPSKIYQAADRVRKKYVGYEVHLRGLIEFSNYCSNT 68

Query: 190 CTFCVVPYTRGIEI-----SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK 244
           C +C     RG             +++   +     G+  I L         G+    + 
Sbjct: 69  CFYC---GLRGPNRTIKRYRMEPEEILQCVKYGASVGLKTIVLQS-------GEDKYFKI 118

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304
            T   ++  + ++   V L       +D    L KA  D         L +++ +  + +
Sbjct: 119 TTLCKIIEEIKKLDIAVTLSIGELSTKDY-AELKKAGADR------YLLRIETTNKELYQ 171

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
            ++   +     + +  +R +     + +  +VG PG+T +     +    KI       
Sbjct: 172 KLHPGMSYENRVRCLMDLREL--GYEVGTGSLVGLPGQTLEMLAQDLIFFKKIDADMLGI 229

Query: 365 FKYSPRLGTP 374
             + P   TP
Sbjct: 230 GPFIPCENTP 239


>gi|27363762|ref|NP_759290.1| lipoyl synthase [Vibrio vulnificus CMCP6]
 gi|37679084|ref|NP_933693.1| lipoyl synthase [Vibrio vulnificus YJ016]
 gi|31340210|sp|Q8DFD1|LIPA_VIBVU RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|47117152|sp|Q7MN17|LIPA_VIBVY RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|27359878|gb|AAO08817.1| lipoic acid synthetase [Vibrio vulnificus CMCP6]
 gi|37197826|dbj|BAC93664.1| lipoate synthase [Vibrio vulnificus YJ016]
          Length = 321

 Score = 61.1 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 34/211 (16%), Positives = 69/211 (32%), Gaps = 12/211 (5%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V    G  +     +    A+ + D  +  + +   +    R    DG   
Sbjct: 94  CTRRCPFCDV--AHGRPLPPEAEEPTKLAKTIADMKLKYVVITSVD----RDDLRDGGAK 147

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
            F+D    +      +R+       R   D  ++A  D     P +       + R+ + 
Sbjct: 148 HFADCNREIRAQSPHIRIETLVPDFRGRMDVALEALKDNP---PDVFNHNLETAPRLYRK 204

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           +           ++ + +   PD+   S  ++G  GET ++    +  +   G       
Sbjct: 205 VRPGANYQWSLDLLKKFKEQHPDVPTKSGLMMGL-GETKEEIVEVLKDLRAHGVTMLTLG 263

Query: 366 KYSP--RLGTPGSNMLEQVDENVKAERLLCL 394
           +Y    R   P    +   + +   E  L L
Sbjct: 264 QYLAPSRHHLPVERYVPPAEFDELKEIALEL 294


>gi|229169696|ref|ZP_04297396.1| Lipoyl synthase [Bacillus cereus AH621]
 gi|228613735|gb|EEK70860.1| Lipoyl synthase [Bacillus cereus AH621]
          Length = 298

 Score = 61.1 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 36/214 (16%), Positives = 79/214 (36%), Gaps = 13/214 (6%)

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           ++V ++ +  +I +    RK     F+ +   C + C FC V      E+   L +    
Sbjct: 37  HTVCEEAKCPNIHECWAVRK--TATFMILGAVCTRACRFCAVKTGLPTEL--DLQEPERV 92

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
           A  ++  G+  + +        R    DG    F++ + ++        +    S    +
Sbjct: 93  ADSVVQMGLKHVVITAV----ARDDLKDGGAAVFAETVRAVRRENPFTSIEVLPSDMGGV 148

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
            + L         ++ +    V+  S+R+      ++      + + R + ++PDI   S
Sbjct: 149 EENLKMLMDAKPDILNHNIETVRRLSNRV--RARAKYDRS--LEFLRRAKEMQPDIPTKS 204

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
             ++G  GET +D    MD +           +Y
Sbjct: 205 SIMLGL-GETREDLIEAMDDLRANNVDILTLGQY 237


>gi|294666890|ref|ZP_06732121.1| lipoyl synthase [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
 gi|292603338|gb|EFF46758.1| lipoyl synthase [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
          Length = 337

 Score = 61.1 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 38/212 (17%), Positives = 71/212 (33%), Gaps = 18/212 (8%)

Query: 161 ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS--QVVDEARKLI 218
           E  S  +       G   F+ + E C + C+FC V + R           +    A  + 
Sbjct: 82  EEASCPNIHECFSHGTATFMILGEVCTRRCSFCDVAHGRPK----PPDANEPASLAATVA 137

Query: 219 DNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD---MSD 275
           D G+  + +   +    R    DG    F D + ++       R+   T   R    M  
Sbjct: 138 DMGLKYVVVTSVD----RDDLRDGGAQHFVDCISAIRASSPNTRIEILTPDFRGKGRMDR 193

Query: 276 CLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDF 335
            L         +  +    +++  D    ++           ++ R ++  P IA  S  
Sbjct: 194 ALEILASSPPDVFNH---NIETVPDLY-PNVRPGADYQWSLTLLQRFKAQHPSIATKSGI 249

Query: 336 IVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           ++G  GET D  +AT+  +           +Y
Sbjct: 250 MLGL-GETMDQVQATLRDLRAHDVDMITIGQY 280


>gi|237807542|ref|YP_002891982.1| Radical SAM domain-containing protein [Tolumonas auensis DSM 9187]
 gi|237499803|gb|ACQ92396.1| Radical SAM domain protein [Tolumonas auensis DSM 9187]
          Length = 766

 Score = 61.1 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 41/238 (17%), Positives = 83/238 (34%), Gaps = 36/238 (15%)

Query: 176 VTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDN--GVCEIT--LLGQ 230
           +   + I  GC   C+FC +    G +I SRS   ++ E  ++ D   G   +   L G 
Sbjct: 369 IKTSVNIMRGCFGGCSFCSITEHEGRQIQSRSHESILTEIEEIRDKVPGFTGVISDLGGP 428

Query: 231 NVNAWR----------------------GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
             N ++                         +D +     +L     ++KG+ ++   + 
Sbjct: 429 TANMYKLRCKSPRAEETCRRASCVFPSICPHMDTDHTPTIELYRKARDLKGIKKILIASG 488

Query: 269 HPRDMSDCLIKAHGDLDV--LMPYLHLPVQSGSDRILKSMNRRHTAYEY--RQIIDRI-R 323
              D++    +   +L    +  YL +  +   +  L  M +      Y  +++ D+  +
Sbjct: 489 VRYDLAVQDPRYVRELVKHHVGGYLKIAPEHTEEGPLSKMMKPGMGSYYKFKELFDKYSK 548

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDK--IGYAQAFSFKYSPRLGTPGSNML 379
               +  +   FI   PG TD+D       + +      Q  +F  SP      + M 
Sbjct: 549 EAGKEQFLIPYFISAHPGTTDEDMVNLALWLKQNNFRLDQVQNFYPSPLAN--ATTMY 604


>gi|254422912|ref|ZP_05036630.1| radical SAM domain protein [Synechococcus sp. PCC 7335]
 gi|196190401|gb|EDX85365.1| radical SAM domain protein [Synechococcus sp. PCC 7335]
          Length = 524

 Score = 61.1 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 32/202 (15%), Positives = 69/202 (34%), Gaps = 8/202 (3%)

Query: 158 DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR-SLSQVVDEARK 216
           D  E +      Y +++     +  + GC   C +CV     G ++      +VV E R+
Sbjct: 216 DYIEAMWPEFEYYLQEQDFYIGVQTKRGCPHNCCYCVYTVVEGKQVRINPADEVVKEMRQ 275

Query: 217 LIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDC 276
           L D G+ +           R    D       +LL  +                 +++  
Sbjct: 276 LYDRGIRKFWFTDAQFIPARRYMEDA-----IELLEKIQASGMTDINWAAYIRADNLTPR 330

Query: 277 LIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFI 336
           L +        M Y  + + SGS  +++ M   +      Q    +++   +  +S ++ 
Sbjct: 331 LCELMVATG--MNYFEIGITSGSQELVRKMRMGYNLKTVLQNCRDLKAAGFNDFVSVNYS 388

Query: 337 VGFPGETDDDFRATMDLVDKIG 358
                E ++  R T+    ++ 
Sbjct: 389 FNVIDERNETIRQTIAYHRELE 410


>gi|183598101|ref|ZP_02959594.1| hypothetical protein PROSTU_01465 [Providencia stuartii ATCC 25827]
 gi|188020259|gb|EDU58299.1| hypothetical protein PROSTU_01465 [Providencia stuartii ATCC 25827]
          Length = 321

 Score = 61.1 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 36/211 (17%), Positives = 77/211 (36%), Gaps = 12/211 (5%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V    G   +   ++ V  A+ + D G+  + +   +    R    DG   
Sbjct: 94  CTRRCPFCDV--AHGRPNAPDANEPVKLAQTIKDMGLRYVVITSVD----RDDLRDGGAQ 147

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
            F+D + ++ E    +++       R   D  ++   +     P +         R+ + 
Sbjct: 148 HFADCISAIREKSPSIKIETLVPDFRGRMDRALEILTETP---PDVFNHNLENVPRLYRQ 204

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           +          ++++R +   PDI   S  +VG  GET+++    M  + + G       
Sbjct: 205 VRPGANYDWSLKLLERFKEAHPDIPTKSGLMVGL-GETNEEIIEVMRDLRRHGVTMLTLG 263

Query: 366 KYSP--RLGTPGSNMLEQVDENVKAERLLCL 394
           +Y    R   P    +   + +   E  + +
Sbjct: 264 QYLQPSRHHLPVKRYVSPAEFDEMKEEAMAM 294


>gi|167765247|ref|ZP_02437360.1| hypothetical protein BACSTE_03635 [Bacteroides stercoris ATCC
           43183]
 gi|167696875|gb|EDS13454.1| hypothetical protein BACSTE_03635 [Bacteroides stercoris ATCC
           43183]
          Length = 337

 Score = 61.1 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 36/156 (23%), Positives = 65/156 (41%), Gaps = 13/156 (8%)

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMS-----DCLIKAHGDLDVLMPY--LHLP 294
           G             E+   +R  Y   H R+++     D L +A+  +   +P+  + + 
Sbjct: 17  GGGTPSQLAEEDFREVFETIRKYYGMEHCREITLEANPDDLTEAYAAMLQNLPFNRISMG 76

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           +Q+  D  LK +NRRH A +    +   R    +  IS D I G PGETD+ ++  +   
Sbjct: 77  IQTFDDSTLKLLNRRHNAAQAVNAVKHCRHAGFN-NISIDLIYGLPGETDERWKRDLQQA 135

Query: 355 DKIGYAQAFSFKYSPRLGTPGSNMLE-----QVDEN 385
             +      ++  +   GT    +L+     +VDE 
Sbjct: 136 VSLNVEHISAYHLTYEEGTRIYELLQAHRIREVDEE 171


>gi|301059397|ref|ZP_07200319.1| radical SAM domain protein [delta proteobacterium NaphS2]
 gi|300446478|gb|EFK10321.1| radical SAM domain protein [delta proteobacterium NaphS2]
          Length = 453

 Score = 61.1 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 40/288 (13%), Positives = 94/288 (32%), Gaps = 21/288 (7%)

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
            +     K    + V++ G  A+   EE   R    + VV  +    + E         R
Sbjct: 129 EVIRRVRKIHPRVPVILGGVYARLC-EEHAARFSGADHVVSKKGTPAIYETF-------R 180

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
                   +                +     L    GC   C +C   +     + R+  
Sbjct: 181 DYGISVPDDSPNFAFPSYPAFDLLNKIHYVCLMTSTGCPYSCHYCASHFLFPEFVQRNPE 240

Query: 209 QVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
           ++ +E     +  G+ + +     +     K         + LL  +++    +R     
Sbjct: 241 EISEEILYWHNKWGIRDFSFYDDALLVSSDK-------HMAVLLERIADHNLNIRFHTPN 293

Query: 268 -SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
             H ++++  +  A          + L +++  +     ++++ +  ++   +D +R+  
Sbjct: 294 AIHVKEITKSI--ALRLHQTGFQTIRLGLETSDNHKRWHLDKKISQGDFAHAMDHLRNAG 351

Query: 327 PDIA-ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
                I    +VG P ++ D    T+   D+ G    +  +YSP   T
Sbjct: 352 FHPNQIGVYIMVGLPEQSPDAVAETIHHADRWG-GIPYLSEYSPIPHT 398


>gi|281420803|ref|ZP_06251802.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Prevotella copri DSM 18205]
 gi|281405095|gb|EFB35775.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Prevotella copri DSM 18205]
          Length = 339

 Score = 61.1 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 63/146 (43%), Gaps = 10/146 (6%)

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV-R 326
            +P D++    +    L +    + +  Q+  +  L+ ++RRH A E  + + R+R++  
Sbjct: 57  CNPDDVTGDFCETLKQLPI--NRISMGAQTFCNERLRFLHRRHNAGEVEEAVTRLRNIGI 114

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ----- 381
            +I+I  D + GFP E+   + + +    ++      ++      GTP  +ML+Q     
Sbjct: 115 RNISI--DLMFGFPEESLSQWMSDIRHAIQLDVEHISAYSLMYEEGTPLYHMLKQGKISE 172

Query: 382 VDENVKAERLLCLQKKLREQQVSFND 407
           +DE    +    L  +L        +
Sbjct: 173 IDEETSRKMYETLIDQLTGAGYEHYE 198


>gi|320449322|ref|YP_004201418.1| lipoyl synthase [Thermus scotoductus SA-01]
 gi|320149491|gb|ADW20869.1| lipoyl synthase [Thermus scotoductus SA-01]
          Length = 323

 Score = 61.1 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 35/201 (17%), Positives = 66/201 (32%), Gaps = 12/201 (5%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V       I     +    A  +    +  + L   +    R    DG   
Sbjct: 95  CTRACKFCAVDTGNPRGI-VDPEEPRRVAEAIARLHIRYVVLTSVD----RDDLPDGGAA 149

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
            F+  + ++ E    V      +   D    L      LD         +++      + 
Sbjct: 150 HFAATIRAIKEKAPGV---LVEALTPDFQGDLKAVETVLDAGPEVYAQNLETVRRLTSRV 206

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
            + R    +  +++   +  RPD+   S  ++G  GET+++    M  +   G       
Sbjct: 207 RDPRAGYDQTLRVLSHAKRYRPDVLTKSSLMLGL-GETEEEILEAMRDLRAAGVDILTLG 265

Query: 366 KYSPRLGTPGSNMLEQ-VDEN 385
           +Y  R  TP    +E+ V   
Sbjct: 266 QYL-RP-TPAHLPVERYVPPE 284


>gi|195970711|gb|ACG60749.1| SAM-dependent oxidase or methyl transferase [Streptomyces
           flavoviridis]
          Length = 424

 Score = 61.1 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 45/235 (19%), Positives = 74/235 (31%), Gaps = 21/235 (8%)

Query: 186 CDKFCTFC--VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK---GL 240
           C   C FC  VV             +     R  +D    +I L G  +     +     
Sbjct: 35  CLSKCHFCDWVVDIPVRRLRYDEEER-----RDYLDALRTQIRLYGPLLTGLGYRPEVMY 89

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLI-------KAHGDLDVLMPYLHL 293
            G           L+ +   VR  +  S  R  S           +     +  +  + +
Sbjct: 90  WGGGTPTRLTPRELTHLAETVRESFDLSTLRQWSVETTPNDLTEDRVAALREAGVDRMSI 149

Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
            VQS S+  L+   R H   +  + ++ +R+   D   + D I GFPGET D    T D 
Sbjct: 150 GVQSLSEYQLRVSGRAHGPDDVTRAVELLRAGGID-NFNVDLISGFPGETLDALGETFDR 208

Query: 354 VDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDA 408
           +  +       + Y     TP + M  Q+              +  E  +    A
Sbjct: 209 LLALDPPHVSVYPYRA---TPKTVMAMQLTRRQIEAHDRTAMTRAYELSMERLRA 260


>gi|83593338|ref|YP_427090.1| radical SAM family protein [Rhodospirillum rubrum ATCC 11170]
 gi|83576252|gb|ABC22803.1| Radical SAM [Rhodospirillum rubrum ATCC 11170]
          Length = 707

 Score = 61.1 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 52/281 (18%), Positives = 89/281 (31%), Gaps = 47/281 (16%)

Query: 131 QTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRG---VTAFLTIQEGCD 187
           Q +      L          + D   E  + R      G  R      +   + +  GC 
Sbjct: 290 QAHGDREVWLNPPPLPLETGEMDRVFELPYARAPHPSYGGARIPAWEMIRFSVNVMRGCF 349

Query: 188 KFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDN--GVCEIT--LLGQNVNAWR------ 236
             C+FC +    G  I SRS   ++ E  ++ D   G   +   L G   N WR      
Sbjct: 350 GGCSFCSITEHEGKVIQSRSEGSILREIEQIRDKTEGFTGVVSDLGGPTANMWRLNCSDP 409

Query: 237 ----------------GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKA 280
                            K L+ ++    DL      I+G+ ++   +    D++      
Sbjct: 410 KIQAVCRRWSCVYPDICKNLETDQTPLVDLYRKARAIQGVKKITIASGLRYDLAVKTPAY 469

Query: 281 HGDL--DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS----- 333
             +L    +  YL +  +   D  L  M +           DR R++    +  +     
Sbjct: 470 VKELVTHHVGGYLKIAPEHTEDGPLALMMKPGMGAY-----DRFRALFETFSKQAGKQQF 524

Query: 334 ---DFIVGFPGETDDDFRATMDLVDKIGY--AQAFSFKYSP 369
               FI   PG TD+D       + +  +   Q  +F  SP
Sbjct: 525 LIPYFIAAHPGTTDEDMMNLALWLKRNHFRADQVQTFLPSP 565


>gi|56477665|ref|YP_159254.1| Fe-S oxidoreductase of unknown function [Aromatoleum aromaticum
           EbN1]
 gi|56313708|emb|CAI08353.1| predicted Fe-S oxidoreductase of unknown function [Aromatoleum
           aromaticum EbN1]
          Length = 735

 Score = 61.1 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 48/283 (16%), Positives = 86/283 (30%), Gaps = 42/283 (14%)

Query: 161 ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLID 219
              S  D        +   + I  GC   CTFC +    G  I SRS + ++ E  ++ D
Sbjct: 367 PHPSYGDARIPAWDMIKFSINIMRGCFGGCTFCSITEHEGRIIQSRSEASILHEIEEIRD 426

Query: 220 N----GVCEITLLGQNVNAWRGKGLD----------------------GEKCTFSDLLYS 253
                      L G   N +R    D                       +      L   
Sbjct: 427 RTPDFKGHITDLGGPTANMYRMACKDKQIESSCRRLSCVYPGICENLQTDHAPLISLYRK 486

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRR-- 309
              I G+ R+   +    D++    +   +L    +   L +  +   +  L  M +   
Sbjct: 487 ARAIPGVKRVTIGSGLRYDLAVRSPEYVRELVTHHVSGLLKIAPEHTEEGPLSKMMKPGI 546

Query: 310 HTAYEYRQIIDRI-RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
            T  ++  + ++  R       +   FI   PG TD+D       + K G+       + 
Sbjct: 547 GTYEKFAAMFEKYSREAGKKQHLVPYFIAAHPGTTDEDMLNLALWLKKNGFRPDQVQTFM 606

Query: 369 PRLGTPGSNML-------EQVDEN---VKAERLLCLQKKLREQ 401
           P      + M         +V  +   V+  R   L+K  +  
Sbjct: 607 PTPMAMATTMYHSRRNPLRKVSADSEIVETARAGKLRKLHKAL 649


>gi|327310255|ref|YP_004337152.1| Radical SAM domain-containing protein [Thermoproteus uzoniensis
           768-20]
 gi|326946734|gb|AEA11840.1| Radical SAM domain protein [Thermoproteus uzoniensis 768-20]
          Length = 536

 Score = 61.1 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 53/301 (17%), Positives = 109/301 (36%), Gaps = 39/301 (12%)

Query: 124 VNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQ 183
           V++VV    Y  L   +E+AR        +   +       +V    N    + A +   
Sbjct: 136 VDLVV----YEALKFGVEKARPSATHEGYELVDQFAVRGAFVVQQHPNFGVNLVAEIETY 191

Query: 184 EGCDKF----CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQ-NVNAWRGK 238
            GC ++    C+FC      G    RS   V  E   L   GV    L  Q +  A+  +
Sbjct: 192 SGCPRYVSGGCSFCTT-VAYGAVEFRSPEAVAREVEALYKAGVVHFRLGRQADFYAYMAE 250

Query: 239 G---LDGEKCTFSDLLYSLSEI----KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL 291
               +D  +   + +   L+ +     GL  L     +P  ++    ++     +L+ Y 
Sbjct: 251 DTGKVDLPRPNTAAVERLLAGVRNAAPGLETLHIDNVNPGTVARWPKESAEVTRLLLKYG 310

Query: 292 H------LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV--------RPDIAISSDFIV 337
                  + V++   +++K+ N +    E  + +  I  +         P +    +F++
Sbjct: 311 TPGNVAAMGVETADPKVVKANNLKAMPDEALEAVRLISRMGAVRGPNGMPWLLPGLNFVL 370

Query: 338 GFPGETDDDFRATMDLVDKIGYA------QAFSFKYSPRLGTPGSNMLEQVDENVK-AER 390
           G PGET + +    + + KI         +    +     GT    +  +++  ++  +R
Sbjct: 371 GLPGETKETYELNKEFLRKI-LDEGLLVRRVNIRQVLVFPGTRLWPVARRLEARLREKKR 429

Query: 391 L 391
           L
Sbjct: 430 L 430


>gi|169831317|ref|YP_001717299.1| putative radical SAM protein [Candidatus Desulforudis audaxviator
           MP104C]
 gi|169638161|gb|ACA59667.1| conserved hypothetical radical SAM protein [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 307

 Score = 61.1 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 27/99 (27%), Positives = 44/99 (44%), Gaps = 4/99 (4%)

Query: 276 CLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDF 335
            LI ++     +  +L   +QS  +R L+ +NR HTA ++   + R R     I + +  
Sbjct: 131 DLIGSYAARWHV--WLEYGLQSIHNRTLERINRGHTAGQFLDAVARARGR--GIFVCAHV 186

Query: 336 IVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
           I+G PGET +D   T   + + G             GTP
Sbjct: 187 ILGLPGETPEDTVETARALTQAGVDGVKVHHLQVIRGTP 225


>gi|241664735|ref|YP_002983095.1| coproporphyrinogen III oxidase [Ralstonia pickettii 12D]
 gi|240866762|gb|ACS64423.1| oxygen-independent coproporphyrinogen III oxidase [Ralstonia
           pickettii 12D]
          Length = 494

 Score = 61.1 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 70/193 (36%), Gaps = 14/193 (7%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C   C +C        + SRS   V   AR++         L       W      G   
Sbjct: 85  CANLCYYCGCNKVITKDRSRSARYVETLAREMAMVASQIGPLRRVTQLHW------GGGT 138

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL-------DVLMPYLHLPVQSG 298
                   +  +    R  +  ++  ++S  L   H D        ++      L +Q  
Sbjct: 139 PTFLAHDEMRAVMAATREHFDVANDGEISVELDPRHADDATLEVLAEIGFNRASLGIQDF 198

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
              + ++++R  +  E R+++D  R +  + +IS D I G P +  + F AT+D V ++ 
Sbjct: 199 DPDVQRAVHRIQSVEETRRVVDTARRLGLE-SISFDLIYGLPYQRTETFNATLDRVLEMA 257

Query: 359 YAQAFSFKYSPRL 371
             +   + Y+   
Sbjct: 258 PDRLSVYSYAHLP 270


>gi|309390168|gb|ADO78048.1| Radical SAM domain protein [Halanaerobium praevalens DSM 2228]
          Length = 545

 Score = 61.1 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 37/209 (17%), Positives = 70/209 (33%), Gaps = 22/209 (10%)

Query: 170 YNRKRGVTAFLTIQEGCDK--FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITL 227
           +     + A L    GC +   C FC     + +  SR    + +E + L   G+    L
Sbjct: 172 HPNFPNLIAELETFRGCPRPSHCAFCSE-RLKKLTYSRQPEAISEEVKTLAAQGIHHYRL 230

Query: 228 LGQNVNAWRG-----KGLDGEKCTFSDLLYSLSEIKG-LVRLRYTTSHPRDMSDCLIKAH 281
             Q      G      G D       +L   + +    L  L     +P +++    KA 
Sbjct: 231 GSQTDLLLYGAQAKKDGFDLNPAQIRELYRGIRQADPELKVLHMDNMNPAEIAKNPTKAA 290

Query: 282 GDLDVLMPY------LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV-------RPD 328
             ++ +  Y          ++S   ++L   N   TA E    I  +  +        P 
Sbjct: 291 QIIETISKYNTPGDTAAFGLESADPKVLAQNNIDSTAQENFFAIKLMNQIGGQRENGIPK 350

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKI 357
           +    +F+ G  GE+    +     ++K+
Sbjct: 351 LLPGLNFLHGLIGESRATLKHNYQFLEKL 379


>gi|260461143|ref|ZP_05809392.1| magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative
           cyclase [Mesorhizobium opportunistum WSM2075]
 gi|259033177|gb|EEW34439.1| magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative
           cyclase [Mesorhizobium opportunistum WSM2075]
          Length = 515

 Score = 61.1 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 38/306 (12%), Positives = 86/306 (28%), Gaps = 34/306 (11%)

Query: 99  GDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVED 158
              +V+  G        +IL  + + + +V  +       L+E     +           
Sbjct: 94  PATIVIYGGVFPTYHWRDILAATDVFDFIVRGEGEATDVALVEALEMHQPPASVAGIAFR 153

Query: 159 KFERLSIVDGGYNRKRGVTAF----------------------LTIQEGCDKFCTFCVVP 196
              R             + A+                      +    GC   C +C   
Sbjct: 154 DDLRRPFATQPAMTVAELDAYRVGWELIDHSRYSYWGGKRAVVMQFSRGCPHLCNYCGQR 213

Query: 197 YTRGIEISRSLSQVVDEARK-LIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
                   R   +   E      ++GV  I L  +N           +K   + L   ++
Sbjct: 214 GFWTRWRHRDPKKFAREIAWLHREHGVELINLADENPTVS-------KKAWRAFLDALIA 266

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
           E   ++ +  T +        ++  +    V+     L +++  ++ L+ + +  +    
Sbjct: 267 EDVPVLIVGSTRADDIVRDADILHLYRKAGVIR--WLLGMENTDEQTLQLIRKGGSISSD 324

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
           R+ I  +R     I   + ++ GF  E           +      Q  +   +P   TP 
Sbjct: 325 REAIRLLRK--HGILSMATWVAGFEDEGFRHLWRGFRQLIAYDPDQIQALYVTPHRWTPF 382

Query: 376 SNMLEQ 381
             +   
Sbjct: 383 FRIARD 388


>gi|118589649|ref|ZP_01547054.1| hypothetical methyltransferase [Stappia aggregata IAM 12614]
 gi|118437735|gb|EAV44371.1| hypothetical methyltransferase [Stappia aggregata IAM 12614]
          Length = 533

 Score = 61.1 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 46/286 (16%), Positives = 98/286 (34%), Gaps = 29/286 (10%)

Query: 99  GDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVED 158
            ++ VVV G  A +  E         + +V  +    L   ++  + G  V +  +S E 
Sbjct: 95  KNVPVVVGGPDATSSPE----VYEAADFLVLGEAEGILTTFIDAWKEG--VRNGRFSAEK 148

Query: 159 KFERLSIVDGGYNRKRGVTAFLTI----QEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDE 213
               ++              ++ I      GC   C FC +    G    +++  Q++ E
Sbjct: 149 FKADVASSPVPRFDLLKFNDYVQIGVQYSRGCPFTCEFCDIIELYGRVPRTKTNEQMLAE 208

Query: 214 ARKLIDNGVC-EITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPR- 271
             +L + G    +  +  N+         G K      L  L++ +      +  S    
Sbjct: 209 LDRLYELGYRGHVDFVDDNLI--------GNKKAVKGFLPELAKWQKERNYPFEMSTEAS 260

Query: 272 ---DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR-HTAYEYRQIIDRIRSVRP 327
                 + L+K           + + ++S    +L +  ++ +T  +  + + +I     
Sbjct: 261 LNLADDEALLKMMQQAGYF--SVFIGIESPDPEVLVATRKKQNTRRDIAKSVHKIYDA-- 316

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
            I + + FIVGF  E+D        L+++     A +        T
Sbjct: 317 GIFVLAGFIVGFDEESDRVADEISALIEEAAIPVAMTGLLYALPNT 362


>gi|116624857|ref|YP_827013.1| radical SAM domain-containing protein [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116228019|gb|ABJ86728.1| Radical SAM domain protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 511

 Score = 61.1 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 62/311 (19%), Positives = 108/311 (34%), Gaps = 38/311 (12%)

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
            R LK ++ + G    VVV G  A    EE L      +VV G        +++E A  G
Sbjct: 73  YRVLKEAKERGG---TVVVGGIHATIFPEEPLS-MGADSVVTGNGD-LIWRKVVEDALSG 127

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE-ISR 205
           +     D       E         +  + + A +    GC + C+FC V  T G +   R
Sbjct: 128 RLQRRYDGGRVPGEEMAKARWDLLDPSKYMMASIQTVAGCPENCSFCSVWVTDGRKPRQR 187

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
              +V++EA +L   G   I     N N      +  E      +  SL  I+   RLR+
Sbjct: 188 LAEKVIEEANELYRMGFRYIVFADDNFNPATLGRIAREPNL--QVRQSLETIR-QERLRF 244

Query: 266 T----------------TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
                             +      D  ++   D   +     + V+S  +  L++ N++
Sbjct: 245 FEQYHRSVPDNLYAFTQMTAEIIDDDEYLRGMRDHMRI-RTALIGVESFDEEGLEAANKQ 303

Query: 310 HT--AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ----AF 363
                 +  + I  I+     I + + +I G     + D   ++ ++ +         A 
Sbjct: 304 WNPVGQKMVRTIQTIQER--GILVLASYICGL----ESDSVNSLRVMRRHALESGAVLAQ 357

Query: 364 SFKYSPRLGTP 374
              Y P  GT 
Sbjct: 358 FTVYFPSPGTK 368


>gi|288802435|ref|ZP_06407874.1| Fe-S protein, radical SAM family [Prevotella melaninogenica D18]
 gi|288334963|gb|EFC73399.1| Fe-S protein, radical SAM family [Prevotella melaninogenica D18]
          Length = 473

 Score = 61.1 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 62/309 (20%), Positives = 114/309 (36%), Gaps = 34/309 (11%)

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
              R  K +       + VV+ G    +  +E  + +    +++GP      P  ++  R
Sbjct: 71  NAYRAYKIADEYRRRGVYVVMGGLHVTSLPDEAAQHAD--TLILGPGE-EAFPRFIKDFR 127

Query: 145 FG---KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
            G   KR V +  S+E+        D     K  V   L +  GC   C FC        
Sbjct: 128 EGHPQKRYVASWRSIENIPP--VRRDLIKREKYFVPNSLVVSRGCPHHCDFCYKDAFYSE 185

Query: 202 EIS---RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258
             S   R +   + E   L    +  +              L G     S+L   +    
Sbjct: 186 GKSFYTRKVDDALAEIDSLPGRHLYFL-----------DNHLLGNPHFASELFEGMR--- 231

Query: 259 GLVRLRYTTSHP-RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR-RHTAYEYR 316
           G+ R+  + S     ++  LI+   +    +  L L  ++ S   L+S N+ ++ + +Y 
Sbjct: 232 GMGRVFQSASTVAAVLNGNLIEKAAEAG--LRSLFLGFETFSPDNLRSSNKLQNLSKDYV 289

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
             ++R+ S+   I I+  F+ G   +  D FR T+D   +     A     +P  GT   
Sbjct: 290 AAVERLHSL--GIMINGSFVFGLDHDDKDVFRRTVDWGIEHSITTATFHVLTPYPGT--- 344

Query: 377 NMLEQVDEN 385
            M +Q++ +
Sbjct: 345 RMFQQMERD 353


>gi|39995141|ref|NP_951092.1| oxygen-independent coproporphyrinogen III oxidase [Geobacter
           sulfurreducens PCA]
 gi|39981903|gb|AAR33365.1| oxygen-independent coproporphyrinogen III oxidase, putative
           [Geobacter sulfurreducens PCA]
 gi|307634646|gb|ADI82894.2| oxygen-independent coproporphyrinogen III oxidase, putative
           [Geobacter sulfurreducens KN400]
          Length = 385

 Score = 61.1 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 41/205 (20%), Positives = 69/205 (33%), Gaps = 17/205 (8%)

Query: 186 CDKFCTFCVVPYTRGIEISRS-----LSQVVDEARKLIDNGVCEI--TLLGQNVNAWRGK 238
           C K C +C         +SRS     +        + ++  V       L      + G 
Sbjct: 14  CLKKCRYCS-------FVSRSDAPLAIDDYASLVAREMEMRVAAANPLPLSPATTLYLGG 66

Query: 239 GLD--GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQ 296
           G            ++ + +   GL      T      +    +        +  L L VQ
Sbjct: 67  GTPSLLSPAALERIIDAAARSYGLGPGAEITLEANPGTVTFQRLADFRSAGVNRLSLGVQ 126

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
           S  D +L  + R HTA + R+ +   R    D  I  D I   PG+T D +R  +     
Sbjct: 127 SFDDGMLVLLGRLHTARQAREAVAATRRAGFD-NIGIDLIHSLPGQTPDQWREQLACAVA 185

Query: 357 IGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +      ++  +   GTP + M E+
Sbjct: 186 LNPDHVSAYGLTVEEGTPFAAMEER 210


>gi|332704763|ref|ZP_08424851.1| Radical SAM domain protein [Desulfovibrio africanus str. Walvis
           Bay]
 gi|332554912|gb|EGJ51956.1| Radical SAM domain protein [Desulfovibrio africanus str. Walvis
           Bay]
          Length = 457

 Score = 61.1 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 56/307 (18%), Positives = 104/307 (33%), Gaps = 26/307 (8%)

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
           +L + R L     +E     V++ G       EEIL        +VG +     PELL R
Sbjct: 84  YLTQAREL-TQLCREASGAPVIIGGPAFSIMPEEILDYLGADFGIVG-EGEKAFPELLAR 141

Query: 143 ARFGKRVVDTDYSVED-----KFERLSIVDGGYNRKRGVTAFLTIQ--EGCDKFCTFCVV 195
              G++      S           +  +V    +   G +  + +Q   GC   C +C  
Sbjct: 142 LARGEQPERITRSSGPGLTGRDMAQPLLVRELVDFYVGGSGMVNLQTKRGCPFKCVYCTY 201

Query: 196 PYTRGI-EISRSLSQVVDE-ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS 253
           P   G     R    VV++ AR   +  +  +       N   G         + ++  +
Sbjct: 202 PCIEGRVLRLREPEAVVEDLARMNAEFAIDHVFFTDSVFNDPGGH--------YLEVAEA 253

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
           L +  GL         P  ++   +       +    + L   +  D  L  +++  +  
Sbjct: 254 LIK-SGLNIKWSAFFKPMPITAGELALLKRSGLYA--VELGTDASCDATLAGLDKSFSFA 310

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
           E         +   +I ++   +   PGET D  R  +  ++     Q   F +S     
Sbjct: 311 EALAFNQACVAQ--EIPVAHFVMFAGPGETMDTVREGLANLE--RLEQCVVFAFSGIRIL 366

Query: 374 PGSNMLE 380
           PG+ +L+
Sbjct: 367 PGTRLLD 373


>gi|72382901|ref|YP_292256.1| Fe-S oxidoreductase [Prochlorococcus marinus str. NATL2A]
 gi|72002751|gb|AAZ58553.1| Elongator protein 3/MiaB/NifB [Prochlorococcus marinus str. NATL2A]
          Length = 537

 Score = 61.1 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 39/301 (12%), Positives = 101/301 (33%), Gaps = 29/301 (9%)

Query: 79  KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPE 138
           +++     I+       K   +  +++ G        ++ +  P   ++   +    L +
Sbjct: 133 EIWRNQRLIKKGLKYAKKYKPNANLILGGGAVSVFYNQLKKSLPKGTIISLGEGELLLEK 192

Query: 139 LLE-----------------RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLT 181
           L+                       ++  +   +  D     SI         G   ++ 
Sbjct: 193 LIRNESIADERCFVVGESPREKLIHEKPNNIIKTACDYSYIQSIWPEFKWYLDGGDFYIG 252

Query: 182 IQ--EGCDKFCTFCVVPYTRGIEISR-SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK 238
           +Q   GC   C +C+     G ++    +S+V+ E ++L + GV             RG 
Sbjct: 253 VQTKRGCPHNCCYCIYTVIEGKKVRINPVSEVIQEIKQLYNLGVRGFWFTDAQFIPSRGH 312

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRY-TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQS 297
             + +     D+L ++ + +GL  + +       ++ + L +        M Y  + + S
Sbjct: 313 IQNAK-----DILQAIHD-EGLNDIHWAAYIRADNLDEELAELMVRTG--MSYFEIGITS 364

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
           GS  +++ M   +      +  + +        +S ++      E  +  R T+    ++
Sbjct: 365 GSQELVRKMRMGYNLKTVLKNCELLAKAGFKAQVSVNYSFNVIDERPETIRQTVAYHREL 424

Query: 358 G 358
            
Sbjct: 425 E 425


>gi|311031770|ref|ZP_07709860.1| lipoyl synthase [Bacillus sp. m3-13]
          Length = 298

 Score = 61.1 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 30/183 (16%), Positives = 65/183 (35%), Gaps = 13/183 (7%)

Query: 186 CDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK 244
           C + C FC V      E  ++   +V +  R +    +    +        R    DG  
Sbjct: 67  CTRACRFCAVKTGLPTELDTQEPERVAESVRLM---NLKHAVITAV----ARDDLKDGGA 119

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304
             F++ + ++        +    S    + + +         ++ +    V+S +     
Sbjct: 120 AIFAETIRAVRRENPFTTIEVLPSDMGGVFENIEMLMAARPDILNHNIETVRSLTP---- 175

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
            +  R T     +++ R + ++PDI   S  ++G  GET ++   TMD +          
Sbjct: 176 RVRARATYDRSLELLRRAKELQPDIPTKSSIMIGL-GETKEEIIETMDDLRANNVDIMAI 234

Query: 365 FKY 367
            +Y
Sbjct: 235 GQY 237


>gi|317128297|ref|YP_004094579.1| oxygen-independent coproporphyrinogen III oxidase [Bacillus
           cellulosilyticus DSM 2522]
 gi|315473245|gb|ADU29848.1| oxygen-independent coproporphyrinogen III oxidase [Bacillus
           cellulosilyticus DSM 2522]
          Length = 380

 Score = 61.1 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 36/236 (15%), Positives = 84/236 (35%), Gaps = 21/236 (8%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQN--VNAWRGKGLDGE 243
           C++ C +C          ++ + + +    + I N V     +  N  +++    G    
Sbjct: 13  CEQICHYCDFNKFF--LKNQPVDEYLSLCDQEIKNTVK----VHPNHAISSIYVGGGTPT 66

Query: 244 KCTFSDLLYSLSEIKGLV---RLRYTTSHPRD--MSDCLIKAHGDLDVLMPYLHLPVQSG 298
             T   L   LS IK      R    T       +    ++   +    +  L +  Q+ 
Sbjct: 67  SLTTLQLSKLLSSIKENFYTDRNVEWTVEVNPGSVDQEKLEMMREYG--VNRLSIGAQTF 124

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
            + +LK + R H   +    I+  R V     +S D + G P +T++ F  T++++ ++ 
Sbjct: 125 HEDLLKKIGRDHQREDVFHTIELARKVGFH-NLSIDIMFGLPKQTEEQFEETLNILTRLP 183

Query: 359 YAQAFSFKYSPRLGTPGSNMLEQ----VDENVKAERLLCLQKKLREQQVSFNDACV 410
                ++       T    +  +    +       ++  L ++  +   +FN   +
Sbjct: 184 IEHISAYSLKVEERTVFYQLWNKGKLSLPGEDIEAKMYELLREKMKNN-NFNQYEI 238


>gi|167628980|ref|YP_001679479.1| hypothetical protein HM1_1106 [Heliobacterium modesticaldum Ice1]
 gi|167591720|gb|ABZ83468.1| hypothetical protein HM1_1106 [Heliobacterium modesticaldum Ice1]
          Length = 500

 Score = 61.1 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 52/329 (15%), Positives = 107/329 (32%), Gaps = 49/329 (14%)

Query: 108 CVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVD 167
           C     GE       +V  + G Q   ++P L  R R  + V +    ++ + + L   D
Sbjct: 116 CDYVMRGECDEAIVDLVEALSGKQALSQVPNLTYR-RGDEVVHNPLNPLQAQLDALPFPD 174

Query: 168 GGYNRKRGVTAF---------------LTIQEGCDKFCTFC-------VVPYTRGIEISR 205
            G + K  ++                 ++   GC   C++C       +          R
Sbjct: 175 MGGDGKYHISDGKLTCCDPQVASVSYEMSASRGCPYVCSYCSSLNLKRIYKGKGPFVRLR 234

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           S+   + E R      V  + ++      +  +    ++    + +    +  GL    +
Sbjct: 235 SVDSTLAELR-WAKGLVKNMRMV-----WFWDEIFADDEAWVREFVGRYKQEIGLPFNIW 288

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR-- 323
              H        +     L  ++    + +Q GS RI K +   +      ++I+  R  
Sbjct: 289 GHPHKIKAKTMAMLVEAGLHQVV----VGIQHGSPRIRKEIY--YRPETDEELIEMSRIL 342

Query: 324 --SVRPDIAISSDFIVGFPGETDDDFRATMDL-VDKIGYAQAFSFKYSPRLGTPGSNMLE 380
             +  P++    D I+  P ET +D   T  L +             S   GT       
Sbjct: 343 AEAKVPEVIY--DLILDSPFETVEDLEMTYRLCMKLHKPFTLNLHGLSFLPGT------- 393

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDAC 409
            +++    + LL  ++  R+Q     +  
Sbjct: 394 DIEKLAVDKGLLTWEELKRQQSRPIEEMY 422


>gi|153840169|ref|ZP_01992836.1| Fe-S oxidoreductase [Vibrio parahaemolyticus AQ3810]
 gi|149746178|gb|EDM57296.1| Fe-S oxidoreductase [Vibrio parahaemolyticus AQ3810]
          Length = 191

 Score = 61.1 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 50/121 (41%), Gaps = 12/121 (9%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +L L +Q+ ++  LK +NR H    Y +I  R R++   I + +  IVG P ET DD   
Sbjct: 13  WLELGLQTANNDTLKRINRGHDFECYAEITQRARAL--GIKVCTHLIVGLPKETRDDNIE 70

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDAC 409
           T+  V  +G             G+  +          KA R   L+    E+ V+     
Sbjct: 71  TLQKVLAVGTDGIKLHGLHIVEGSTMA----------KAWRAGRLEAPGLEEYVAIASEM 120

Query: 410 V 410
           +
Sbjct: 121 I 121


>gi|167039779|ref|YP_001662764.1| biotin synthase [Thermoanaerobacter sp. X514]
 gi|166854019|gb|ABY92428.1| Radical SAM domain protein [Thermoanaerobacter sp. X514]
          Length = 352

 Score = 61.1 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 36/250 (14%), Positives = 78/250 (31%), Gaps = 32/250 (12%)

Query: 138 ELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKR--------GVTAFLTIQEGCDKF 189
           EL+E+      +   +       E  S +    +R R         +   +     C   
Sbjct: 12  ELIEKLETHHNIDKEELVTLLALEDPSKIYQAADRVRKKYVGDEVHLRGLIEFSNYCSNT 71

Query: 190 CTFCVVPYTRGIEI-----SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK 244
           C +C     RG             +++   +     G+  I L         G+    + 
Sbjct: 72  CFYC---GLRGPNRTIKRYRMEPEEILQCVKYGASVGLKTIVLQS-------GEDKYFKI 121

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304
            T   ++  + ++   V L       +D    L KA  D         L +++ +  + +
Sbjct: 122 TTLCKIIEEIKKLDIAVTLSIGELSTKDY-AELKKAGADR------YLLRIETTNKELYQ 174

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
            ++   +     + +  +R +     + +  +VG PG+T +     +    KI       
Sbjct: 175 KLHPGMSYENRVRCLMDLREL--GYEVGTGSLVGLPGQTLEMLAQDLIFFKKIDADMLGI 232

Query: 365 FKYSPRLGTP 374
             + P   TP
Sbjct: 233 GPFIPCENTP 242


>gi|89897169|ref|YP_520656.1| hypothetical protein DSY4423 [Desulfitobacterium hafniense Y51]
 gi|89336617|dbj|BAE86212.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 456

 Score = 61.1 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 48/319 (15%), Positives = 104/319 (32%), Gaps = 40/319 (12%)

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG------------ 129
           + L  ++ +         ++ ++V G  A  +  +   ++ I  +++G            
Sbjct: 70  NHLNIVKAIAARFKSINPEVFIIVGGHHATVKPADYNDQA-IDLIIIGEGVFTLRQVLKH 128

Query: 130 PQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRG---------VTAFL 180
            ++     ++   A  G  +  T        + L   D     +             A +
Sbjct: 129 KESLLPFEDIPGLAIPGAVMKFTAERPYTPLDDLPFPDRSLTARYRNHYFSDWMKPIASI 188

Query: 181 TIQEGCDKFCTFCV-VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
               GC   C FC     T G  + R+  ++V E + + +  V            +    
Sbjct: 189 RTSLGCFGRCNFCALWSITNGKYLQRNPERIVAELQGIQEEIV------------FFCDD 236

Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL-MPYLHLPVQSG 298
                    D L  L +  G+ R +Y      D      +       + +  + +  +S 
Sbjct: 237 ESMCDTRRMDQLADLIQEAGI-RKKYFLYGRVDTIVKHPELFAKWKNIGLIQVFVGFESF 295

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           SD  L+ +N+  T  +  + +  +  +  +I I + F++  P  T  +F   +    K+ 
Sbjct: 296 SDERLQGLNKNITVAQQEEAVKILNDL--NIDIYASFVID-PSFTRQEFTQLIAYTRKLN 352

Query: 359 YAQAFSFKYSPRLGTPGSN 377
            A A     +P  GT    
Sbjct: 353 IAYAALSVLTPLPGTALYE 371


>gi|258406312|ref|YP_003199054.1| hypothetical protein Dret_2192 [Desulfohalobium retbaense DSM 5692]
 gi|257798539|gb|ACV69476.1| Protein of unknown function DUF2344 [Desulfohalobium retbaense DSM
           5692]
          Length = 842

 Score = 61.1 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 54/277 (19%), Positives = 91/277 (32%), Gaps = 27/277 (9%)

Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
           P + +     + V+D D         L      ++R       L I  GC + C FC   
Sbjct: 198 PAMAQSEVERRMVIDLDAIPFPTQPVLPFGKVVHDRYS-----LEIARGCTRGCRFCHAG 252

Query: 197 YTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
            T      RSL  +    ++ +D  G  E++ L  +     G     E          L 
Sbjct: 253 MTYRPVRERSLPVLQRLVQEGLDATGFEELSFLSLST----GDFSMLETLFAQSYARCLE 308

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
           E   +           +    LI              L  ++GS R+   +N+  +    
Sbjct: 309 EQVAVALPSLRVGSVSEQMMGLIARIRRTG-----ATLAPEAGSQRLRDVINKGISEEAL 363

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA----------QAFSF 365
            +  +++ +     +I   F++G P ET+ D  A  DL  K+              A   
Sbjct: 364 LRHTEQLFAHGWQ-SIKLYFMIGLPTETEADLEAIFDLCQKVRQTAGKQAKRVQITAAIS 422

Query: 366 KYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQ 402
            + P+  TP      Q+      ER+  LQ   R Q+
Sbjct: 423 PFVPKPHTP-FQWQRQLSCQEVRERIGFLQDCFRHQK 458


>gi|145591644|ref|YP_001153646.1| radical SAM domain-containing protein [Pyrobaculum arsenaticum DSM
           13514]
 gi|145283412|gb|ABP50994.1| Radical SAM domain protein [Pyrobaculum arsenaticum DSM 13514]
          Length = 476

 Score = 61.1 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 38/219 (17%), Positives = 82/219 (37%), Gaps = 24/219 (10%)

Query: 164 SIVDGGYNRKRGVTAFLTIQ----EGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLID 219
            + +  Y R     +  +I      GC   C FC+  Y       R    VV+EA +L  
Sbjct: 162 DVREVDYRRLPEPESAFSISIEAARGCPFSCLFCMESYITKPYRPRDWITVVNEAERLYK 221

Query: 220 NGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIK 279
                 +L+    N+            F ++L   + ++  + L   +     + D  ++
Sbjct: 222 KSGVRPSLVALTANSH---------PHFKEILR--AAVERGLPLSLPSLRAELLDDEALE 270

Query: 280 AHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGF 339
               L      L +  ++ S+R+ K++ +  T  +  ++  +   +   + +    +VG 
Sbjct: 271 LIARLGQ--RTLTIAPET-SERLRKALGKNFTNQDVIRVAKKASQL--GLKLKLYLMVGL 325

Query: 340 PGETDDDFRATMDLVDKIG----YAQAFSFKYSPRLGTP 374
           P E +DD +  ++L  ++     Y       + P+  TP
Sbjct: 326 PCEKEDDLKEVVELAKQVKRVGAYLYLSVNPFVPKPQTP 364


>gi|154244892|ref|YP_001415850.1| radical SAM domain-containing protein [Xanthobacter autotrophicus
           Py2]
 gi|154158977|gb|ABS66193.1| Radical SAM domain protein [Xanthobacter autotrophicus Py2]
          Length = 679

 Score = 61.1 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 44/243 (18%), Positives = 80/243 (32%), Gaps = 34/243 (13%)

Query: 161 ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLID 219
              S  D        +   +TI  GC   CTFC +    G  I +RS   ++ E   + D
Sbjct: 327 PHPSYGDAKIPAWDMIKFSVTIMRGCFGGCTFCSITEHEGRIIQNRSEGSILREIELIRD 386

Query: 220 NGVCEITLL----GQNVNAWRGKGLDGE----------------------KCTFSDLLYS 253
                  ++    G   N +R    D +                            L   
Sbjct: 387 KTPGFTGVISDIGGPTANMYRMACKDPKIEAACRRPSCVFPDICPNLNTSHDDLIRLYRK 446

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRRH- 310
           + E++G+ ++   +    D++    +   +L    +  YL +  +      L  M +   
Sbjct: 447 VREVEGVKKVMVASGVRYDLAVKSPEYIKELVTHHVGGYLKIAPEHTERGPLDKMMKPGI 506

Query: 311 -TAYEYRQIIDR-IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY--AQAFSFK 366
            T   ++++ D  ++       +   FI   PG TD+D       + K  Y   Q  +F 
Sbjct: 507 GTYDRFKEMFDAAVKQAGKKYYLIPYFIAAHPGTTDEDMMNLALWLKKNRYRADQVQTFL 566

Query: 367 YSP 369
            SP
Sbjct: 567 PSP 569


>gi|312877235|ref|ZP_07737203.1| Radical SAM domain protein [Caldicellulosiruptor lactoaceticus 6A]
 gi|311795949|gb|EFR12310.1| Radical SAM domain protein [Caldicellulosiruptor lactoaceticus 6A]
          Length = 218

 Score = 61.1 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 37/210 (17%), Positives = 73/210 (34%), Gaps = 11/210 (5%)

Query: 173 KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV-VDEARKLIDNGVCEITLLGQN 231
           K  +      Q  C   C FC         IS    +V  D  ++ I+ G+         
Sbjct: 2   KHRILPIFIPQYACPFNCIFC-----NQKTISGEKEEVSFDRIKRQIEQGLKINPDEDVE 56

Query: 232 VNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL 291
           + A+ G         F   L  L+     ++    ++ P  + +  ++     +  +  +
Sbjct: 57  L-AYYGGNFTAIDIDFQKKLLELANSFERIKSIRISTRPDCIDEERLRLLKLYN--VKTI 113

Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351
            L +QS  D +L +  R HTA   +  ++ I+       +    +VG P  T +    T 
Sbjct: 114 ELGIQSMFDDVLNACARGHTAQHSKNAMEMIKKF--GFLLGVQVMVGLPKSTPEKDIETA 171

Query: 352 DLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
            ++       A  +      GT  + M ++
Sbjct: 172 KILTGFSPDIARIYPTLVIEGTYLAKMYQK 201


>gi|326774876|ref|ZP_08234141.1| Radical SAM domain protein [Streptomyces cf. griseus XylebKG-1]
 gi|326655209|gb|EGE40055.1| Radical SAM domain protein [Streptomyces cf. griseus XylebKG-1]
          Length = 622

 Score = 61.1 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 51/281 (18%), Positives = 82/281 (29%), Gaps = 38/281 (13%)

Query: 115 EEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKR 174
           +E     P V  +     Y R    +E        VD D        RL+  +       
Sbjct: 297 QERFAELPGVGSLF---LYDRHGRRIESIPLSGTPVDGDRLPYIDVTRLTHENRFPVFGH 353

Query: 175 GVTAFLTIQEGCDKFCTFC-----VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLG 229
             TA +    GC   C+FC        Y +     RS   V+ E R   D G  E     
Sbjct: 354 RRTAQIMACLGCKYACSFCHESADAFLYEQPKIRQRSPCHVMGEIRLRRDQGF-EAVFFD 412

Query: 230 QNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP--RDMSDCLIKAHGDLDVL 287
            +            +   +D L  L ++    R           D+   L++        
Sbjct: 413 DSTFTQ-------NRRWLADFLTLLEDLTSDHRPLEWGCQTTVNDVDRDLLRRMA--GAG 463

Query: 288 MPYLHLPVQSGSDRILK-------SMNRRHT--AYEYRQIIDRIRSVRPDIAISSDFIVG 338
             Y++  V+S      +        +    T     +R +    R     I + +    G
Sbjct: 464 CSYVYFGVESAEPDTERVQKVRQLLLVSPATDWTDRFRDVAHWCREA--GIRVGTSLQFG 521

Query: 339 FPGETDDDFRATMDLVDKIGYAQAFSFKY------SPRLGT 373
             GE+ +    T+DLV ++                SP  GT
Sbjct: 522 L-GESPEQRLRTLDLVAELHRDGCIPDGCVALNVNSPYPGT 561


>gi|266622305|ref|ZP_06115240.1| putative magnesium-protoporphyrin IX monomethyl ester oxidative
           cyclase [Clostridium hathewayi DSM 13479]
 gi|288865976|gb|EFC98274.1| putative magnesium-protoporphyrin IX monomethyl ester oxidative
           cyclase [Clostridium hathewayi DSM 13479]
          Length = 478

 Score = 61.1 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 35/202 (17%), Positives = 60/202 (29%), Gaps = 18/202 (8%)

Query: 175 GVTAFLTIQEGCDKFCTFCVVPYTR-GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVN 233
              A L     C   C FC       G    R L  V++E   +       I +   +  
Sbjct: 211 SPVALLKTSSSCPFHCAFCYGRQLNCGTYCQRDLEAVIEELETIP---CDHIQIADDDFL 267

Query: 234 AWRGKGLDGEKCTFSDLLYSLSEIK-GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLH 292
                    +       +  L E       + Y  S      + LI+   +      Y+ 
Sbjct: 268 F--------DVPRLKTFIRLLRERNIKKTFICYGRSDFIAAHESLIRELAEAG--FRYIM 317

Query: 293 LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352
           + +++ SD  L S  +  +     Q I  +      I +   FI+       +DFR    
Sbjct: 318 VGLEAVSDSFLDSYQKHSSQALNIQTIRILHKY--GINLVGLFIIDSRF-KKEDFRNMRR 374

Query: 353 LVDKIGYAQAFSFKYSPRLGTP 374
            +            ++P  GTP
Sbjct: 375 FIHAHRITYTGVSIFTPIPGTP 396


>gi|289208689|ref|YP_003460755.1| radical SAM protein [Thioalkalivibrio sp. K90mix]
 gi|288944320|gb|ADC72019.1| Radical SAM domain protein [Thioalkalivibrio sp. K90mix]
          Length = 758

 Score = 61.1 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 54/352 (15%), Positives = 111/352 (31%), Gaps = 50/352 (14%)

Query: 68  NTCHIRE-KAAEKVYSFLG--RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIV 124
           +TC   E KA  +  +  G  ++        +       V+     +    + +  +   
Sbjct: 259 STCAEAETKAESEDTAGEGGAQVVRFHRDIPRGTPRDKTVIRIPAFEQVKGDSVLYAHAS 318

Query: 125 NVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTA------ 178
            V+           +++R    +  ++         E  ++ D  Y R    +       
Sbjct: 319 RVLHLETNPGNARAIVQRHGDKEVWLNPPPIPLTTAEMDAVFDLPYARAPHPSYGDARIP 378

Query: 179 -------FLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDN--GVCEIT-- 226
                   + I  GC   CTFC +    G  I SRS   V+ E  ++ D   G   +   
Sbjct: 379 AWEMIRFSVNIMRGCFGGCTFCSITEHEGRIIQSRSEESVLKEIEEIRDKVDGFTGVVSD 438

Query: 227 LLGQNVNAWR----------------------GKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
           L G   N +R                       K LD +     +L      + G+ ++ 
Sbjct: 439 LGGPTANMYRLACKDPEIERSCRRLSCVYPGICKNLDTDHTPLVNLYRKARALPGIKKIL 498

Query: 265 YTTSHPRDMSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRRHTAYE--YRQIID 320
             +    D++    +   +L    +  YL +  +      L  M +        ++ + +
Sbjct: 499 IASGLRYDLAVESPEYVKELVTHHVGGYLKIAPEHTESGPLSRMMKPGMGAYDRFKAMFE 558

Query: 321 RI-RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY--AQAFSFKYSP 369
           +  +    +  +   FI   PG +D+D       + +  +   Q  +F  SP
Sbjct: 559 KYSKQAGKEQYLIPYFIAAHPGTSDEDMLNLALWLKRNNFRADQVQAFLPSP 610


>gi|222100666|ref|YP_002535234.1| Methyltransferase [Thermotoga neapolitana DSM 4359]
 gi|221573056|gb|ACM23868.1| Methyltransferase [Thermotoga neapolitana DSM 4359]
          Length = 456

 Score = 61.1 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 51/314 (16%), Positives = 108/314 (34%), Gaps = 48/314 (15%)

Query: 126 VVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEG 185
           +V        LP  LE+  F  + +      E+ FE    +   Y R   +    T+  G
Sbjct: 158 LVFPFGDLVFLPSFLEKLGFPSKEI-----PENWFEIFDPMYELYERVGYLVFTTTL--G 210

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEK 244
           C   C++C V         RS  +VV+   K +D   V ++      + A          
Sbjct: 211 CPFHCSYCAVHRLWKGLRVRSPERVVETVEKYLDMFQVEDVVFFDDAILAS--------- 261

Query: 245 CTFSDLLYSLSEIKGLVRLRY---TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
             F ++L  + E    VR        +   D    L+    +   +     L  ++    
Sbjct: 262 GRFKEVLKLIVEKNWKVRFHLPNGIHARLLDEETALLMKEANFKTI----KLGYETAGKL 317

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSV-RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
             ++  + +   +  +    +R V   +  +S+  +V  PG+T +D    + +    G  
Sbjct: 318 QKETGGKVYD-EDLVRAARILRKVGFTEEEVSAYIMVNMPGQTKEDVLEAVRVCLNEGIG 376

Query: 361 QAFSFKYSPRLGTPGSN---MLEQVDENV------------------KAERLLCLQKKLR 399
                +Y+P  GT         +++D +V                    E +  +++ ++
Sbjct: 377 -VSVNEYTPIPGTEDWKKLVREKKLDPDVDPVLLNNTVLPFWWKYGMSPEEIQEIKQLVQ 435

Query: 400 EQQVSFNDACVGQI 413
           + ++ ++ A  G  
Sbjct: 436 DLKIRYSKAYTGSR 449


>gi|153005798|ref|YP_001380123.1| radical SAM domain-containing protein [Anaeromyxobacter sp.
           Fw109-5]
 gi|152029371|gb|ABS27139.1| Radical SAM domain protein [Anaeromyxobacter sp. Fw109-5]
          Length = 521

 Score = 61.1 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 53/324 (16%), Positives = 106/324 (32%), Gaps = 40/324 (12%)

Query: 62  ADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRS 121
           AD ++++   ++      + + L R R+L             VV G       E    R 
Sbjct: 66  ADAVLVSGMLVQAP---SMLATLARARDLGKPG---------VVGGPAPTTSPE----RF 109

Query: 122 PIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVE-DKFERLSIVDGGY----NRKRGV 176
           P    V   +   RL  L+        V + + S   D    L++            R  
Sbjct: 110 PEAAYVFRGEAEGRLDRLVAALEHPGSVRERELSPRGDGRPDLALTRVPRFDLLALDRYA 169

Query: 177 TAFLTIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVC-EITLLGQNVNA 234
           +  + +  GC   C FC +    G     +S +QV+ E   L   G    + L+  N   
Sbjct: 170 SQAIQVSRGCPFSCEFCDIIEVFGRVPRVKSAAQVLAELDALWRLGARGPLFLVDDNFI- 228

Query: 235 WRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMS----DCLIKAHGDLDVLMPY 290
                  G +   + LL  ++  +      +       +       L+     +      
Sbjct: 229 -------GNRRAAARLLPEIARWQLAHGRPFDLYTEASLDLATLPDLLDGM--VAAGFSA 279

Query: 291 LHLPVQSGSDRILKSMNRRHT-AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           + + V++     L+   +R     +  + + R+ +V   + + + FIVGF  +  + F  
Sbjct: 280 VFVGVETPEPAALEEAGKRQNLRVDPAEAVRRLTAV--GLEVFAGFIVGFDADGAETFER 337

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGT 373
               +  +   +A     +   GT
Sbjct: 338 QRAFIQGLPIPRAMVGTLTALPGT 361


>gi|222110826|ref|YP_002553090.1| radical sam domain-containing protein [Acidovorax ebreus TPSY]
 gi|221730270|gb|ACM33090.1| Radical SAM domain protein [Acidovorax ebreus TPSY]
          Length = 829

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 41/242 (16%), Positives = 77/242 (31%), Gaps = 44/242 (18%)

Query: 176 VTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDN--GVCEIT--LLGQ 230
           + A + I  GC   CTFC +    G  I SRS   ++ E   + D   G       L G 
Sbjct: 422 IRASINIMRGCFGGCTFCSITEHEGRIIQSRSEDSIIAEVEDIRDKVKGFTGTISDLGGP 481

Query: 231 NVNAWR----------------------GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
             N +R                       + L  +     ++     ++ G+ ++   + 
Sbjct: 482 TANMYRLGCKSPEIEAACRKPSCVFPGICQNLHTDHAPLVNIYRRARKLPGIKKILIGSG 541

Query: 269 HPRDMSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRR----HTA-----YEYRQ 317
              D++    +   +L    +  YL +  +      L  M +     +        +Y +
Sbjct: 542 LRYDLAVKSPEYVKELVQHHVGGYLKIAPEHTEAGPLSKMMKPGIGNYDRFKQMFEQYTE 601

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
              + + + P       FI   PG TD+D       + K G+       + P      + 
Sbjct: 602 EAGKKQFLIPY------FIAAHPGTTDEDMLNLAIWLKKNGFRADQVQAFYPSPMASATA 655

Query: 378 ML 379
           M 
Sbjct: 656 MY 657


>gi|121594586|ref|YP_986482.1| radical SAM domain-containing protein [Acidovorax sp. JS42]
 gi|120606666|gb|ABM42406.1| Radical SAM N-terminal domain protein [Acidovorax sp. JS42]
          Length = 847

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 41/242 (16%), Positives = 77/242 (31%), Gaps = 44/242 (18%)

Query: 176 VTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDN--GVCEIT--LLGQ 230
           + A + I  GC   CTFC +    G  I SRS   ++ E   + D   G       L G 
Sbjct: 422 IRASINIMRGCFGGCTFCSITEHEGRIIQSRSEDSIIAEVEDIRDKVKGFTGTISDLGGP 481

Query: 231 NVNAWR----------------------GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
             N +R                       + L  +     ++     ++ G+ ++   + 
Sbjct: 482 TANMYRLGCKSPEIEAACRKPSCVFPGICQNLHTDHAPLVNIYRRARKLPGIKKILIGSG 541

Query: 269 HPRDMSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRR----HTA-----YEYRQ 317
              D++    +   +L    +  YL +  +      L  M +     +        +Y +
Sbjct: 542 LRYDLAVKSPEYVKELVQHHVGGYLKIAPEHTEAGPLSKMMKPGIGNYDRFKQMFEQYTE 601

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
              + + + P       FI   PG TD+D       + K G+       + P      + 
Sbjct: 602 EAGKKQFLIPY------FIAAHPGTTDEDMLNLAIWLKKNGFRADQVQAFYPSPMASATA 655

Query: 378 ML 379
           M 
Sbjct: 656 MY 657


>gi|33866728|ref|NP_898287.1| hypothetical protein SYNW2196 [Synechococcus sp. WH 8102]
 gi|33639329|emb|CAE08711.1| conserved hypothetical protein [Synechococcus sp. WH 8102]
          Length = 524

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 56/333 (16%), Positives = 114/333 (34%), Gaps = 33/333 (9%)

Query: 57  NSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEE 116
              + A++++++   ++    + +   + + +            L V + G  A +  + 
Sbjct: 61  EEWNWAEMVIISGMIVQ---KDDMAVQISKAKQ---------RGLPVAIGGPFASSTPDA 108

Query: 117 I-LRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRG 175
             L ++    +  G  T     E LER     R        +     +   D        
Sbjct: 109 PELDQADFKILDEGEITLPMFLEALERGDTSGRFTAEGDKPDVTVTPIPRFDLLELDAYD 168

Query: 176 VTAFLTIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNG-VCEITLLGQNVN 233
             + +    GC   C FC +    G +  +++  Q+V E + L D G    I L+  N  
Sbjct: 169 SMS-VQFSRGCPFNCEFCDIIVLYGRKPRTKTPEQLVAELQSLYDLGWGRSIFLVDDNFI 227

Query: 234 AWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT----TSHPRDMSDCLIKAHGDLDVLMP 289
                   G K     LL  +   +      ++     S      + +++   D      
Sbjct: 228 --------GNKRNAKLLLPQIRTWQEERGYPFSFATEASVDLADDEEMMQMMHDAR--FE 277

Query: 290 YLHLPVQSGSDRILKSMNR-RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFR 348
            + L +++  +  L++  + ++T       +DRI +    I + + FI+GF GE D    
Sbjct: 278 SVFLGIETPDESSLETARKIQNTRNPLDAAVDRITAN--GIRVMAGFIIGFDGEKDGAGH 335

Query: 349 ATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
             +D V + G   A          T     LE+
Sbjct: 336 RIVDFVTRTGIPAAMMGMLQALPKTALWARLEK 368


>gi|260437934|ref|ZP_05791750.1| oxygen-independent coproporphyrinogen III oxidase 2 [Butyrivibrio
           crossotus DSM 2876]
 gi|292809685|gb|EFF68890.1| oxygen-independent coproporphyrinogen III oxidase 2 [Butyrivibrio
           crossotus DSM 2876]
          Length = 478

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 47/257 (18%), Positives = 83/257 (32%), Gaps = 25/257 (9%)

Query: 120 RSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAF 179
           + P+  V  G      +  L E     ++       V      L       + K G + +
Sbjct: 106 KIPLAMVEEGVDDKTIIRHLEEEYLVNEKKSLLSLEVAANENELLKT---LDYKNGYSLY 162

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
           + I   C   C +C          S  +S   D+    +D    E+  L +++   R   
Sbjct: 163 IGIPF-CPTTCLYCSFT-------SYPISMWKDKVDSYLDALFKELKYLSEHLRGRRPDS 214

Query: 240 LD---GEKCTFS--------DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLM 288
           +    G   T          D L S  +   L         P  +    ++      +  
Sbjct: 215 IYIGGGTPTTLLPYQFERLFDFLESCFDYSNLKEFTVEAGRPDSIDRDKLEVIKKHGI-- 272

Query: 289 PYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFR 348
             + +  Q+ + + L  + RRHT  +        R    D  I+ D IVG PGE  +D R
Sbjct: 273 GRISINPQTMNQKTLDLIGRRHTVEQICDTFKMARDCGFD-NINMDMIVGLPGEDKEDVR 331

Query: 349 ATMDLVDKIGYAQAFSF 365
            T++ + K+        
Sbjct: 332 NTLEQIMKLSPDNLTVH 348


>gi|77461184|ref|YP_350691.1| lipoyl synthase [Pseudomonas fluorescens Pf0-1]
 gi|123772035|sp|Q3K6A4|LIPA_PSEPF RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|77385187|gb|ABA76700.1| lipoyl synthase [Pseudomonas fluorescens Pf0-1]
          Length = 340

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 37/214 (17%), Positives = 75/214 (35%), Gaps = 10/214 (4%)

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           + +    E  S  + G     G   F+ + + C + C FC V + R   +   +++    
Sbjct: 77  HKLHSVCEEASCPNLGECFSGGTATFMIMGDICTRRCPFCDVGHGRPKPL--DVNEPESL 134

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
           A  + D  +  + +   +    R    DG    F+D +  + ++   V+L       R  
Sbjct: 135 AIAIADLKLKYVVITSVD----RDDLRDGGAQHFADCIREIRKLSPNVQLETLVPDYRGR 190

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
            D  ++         P +         R+ K+            ++ R + + P I   S
Sbjct: 191 MDIALEITAAEP---PDVFNHNLETVPRLYKAARPGSDYQWSLTLLQRFKQMMPHIPTKS 247

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
             ++G  GETDD+    M  + +         +Y
Sbjct: 248 GLMLGL-GETDDEVIEVMKRMREHDIDMLTLGQY 280


>gi|325290801|ref|YP_004266982.1| Conserved hypothetical protein CHP01212 [Syntrophobotulus
           glycolicus DSM 8271]
 gi|324966202|gb|ADY56981.1| Conserved hypothetical protein CHP01212 [Syntrophobotulus
           glycolicus DSM 8271]
          Length = 312

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 78/220 (35%), Gaps = 18/220 (8%)

Query: 188 KFCTFCVVPYTRGIEISR--SLSQVVDEARKLIDNGVCEITLLG--QNVNAWRGKGLDGE 243
             C FC    +      R  +L++   E R+       +   +   Q+         D +
Sbjct: 48  HGCIFCSTKGSGDFAGDRALTLAEQFGEVRERTKKKWPKAKYIAYFQSFTGTYADPDDLQ 107

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGD-LDVLMPYLHLPVQSGSDRI 302
           K    D   +L ++ GL      ++ P  +++ ++            ++ L +QS  D  
Sbjct: 108 K--LYDEALALKDVVGLA----VSTRPDCINEEVLHVLEKINRKTYLWIELGLQSIHDST 161

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           L  +NR H    + +   ++R+    I +    I+G P E      AT   + K+     
Sbjct: 162 LAWLNRGHDYACFLEAFHKLRAR--GIRVCVHVILGLPCEDRSQMLATAREMSKLDIQGI 219

Query: 363 FSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQ 402
                    GT  + + E+     K  +L+ L++ +    
Sbjct: 220 KLHSLHVLKGTALAGLFER-----KEFKLMTLEEYIELIA 254


>gi|51893563|ref|YP_076254.1| coproporphyrinogen III oxidase [Symbiobacterium thermophilum IAM
           14863]
 gi|51857252|dbj|BAD41410.1| putative Fe-S oxidoreductase [Symbiobacterium thermophilum IAM
           14863]
          Length = 526

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 33/204 (16%), Positives = 70/204 (34%), Gaps = 16/204 (7%)

Query: 173 KRGVTAFLTIQEGCDKFCTFC---VVPY-TRGIEISRSLSQ------VVDEARKLIDNGV 222
            R V+ ++ I   C   C+FC   + P      +IS  L        ++ +A + +   V
Sbjct: 190 PRAVSLYIGIPF-CPSICSFCSFSIYPINQHRDQISPFLEALGREMAIIGQAIRDLGLRV 248

Query: 223 CEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHG 282
             I   G    + R +              +L + +           P   +   +    
Sbjct: 249 ESIYFGGGTPTSPRDEDFA---WMLRTAAETLLKGQSPAEYTIEGGRPETFNRYKLDVMA 305

Query: 283 DLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGE 342
                +  + +  Q+     L  + R HT  ++ +  D +RS      +++D I+G PGE
Sbjct: 306 AHG--VTRVSVNPQTTVQATLMHLGRIHTVEKFYRAYDLVRSHPAGFTVNTDIIIGLPGE 363

Query: 343 TDDDFRATMDLVDKIGYAQAFSFK 366
              +   T++ + ++         
Sbjct: 364 GPAEVHHTLEDMRRLAPDNLTVHT 387


>gi|291542889|emb|CBL15999.1| Coproporphyrinogen III oxidase and related Fe-S oxidoreductases
           [Ruminococcus bromii L2-63]
          Length = 479

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 31/180 (17%), Positives = 71/180 (39%), Gaps = 13/180 (7%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C   C++C       IE      ++++   KL+   +     +   +         G   
Sbjct: 165 CPSRCSYCSF-VMASIER---AEKLIEPYTKLLCEEIKRTAEIANKLGLRLETVYFGGGT 220

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDC--------LIKAHGDLDVLMPYLHLPVQS 297
             +     L  + G V   +  S  R+ +          + K     +  +  + +  Q+
Sbjct: 221 PTTLSAEQLDTVLGTVNNSFDMSTCREFTVEAGRPDTIDIAKLFALKENKVDRISINPQT 280

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
            ++ +LK++ R+HTA ++    +  R    D  I++D I G P +T + F+ ++D + ++
Sbjct: 281 VNNEVLKTIGRKHTAQQFFDAFELARKCGFD-NINTDLIAGLPTDTTESFKNSLDSIVRL 339


>gi|238925275|ref|YP_002938792.1| coproporphyrinogen dehydrogenase [Eubacterium rectale ATCC 33656]
 gi|238876951|gb|ACR76658.1| coproporphyrinogen dehydrogenase [Eubacterium rectale ATCC 33656]
          Length = 530

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 43/201 (21%), Positives = 68/201 (33%), Gaps = 18/201 (8%)

Query: 174 RGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNV- 232
            G + ++ I   C   C +C          S  L    +     +D    EI    Q   
Sbjct: 206 NGYSLYIGIPF-CPSTCAYCSFT-------SYPLGVWKNRVDDYLDALEKEIDYTAQKFY 257

Query: 233 ----NAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR----YTTSHPRDMSDCLIKAHGDL 284
               N+    G      + + L   + +IK    L+    +T    R  S    K     
Sbjct: 258 HKKLNSIYIGGGTPTTLSPAQLDRLIRKIKCSFDLKDCLEFTVEAGRPDSITREKLLALK 317

Query: 285 DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETD 344
              +  + +  Q+   + L  + R HT  +  Q     R +  D  I+ D I+G P ET 
Sbjct: 318 KNGISRISVNPQTMKQQTLDIIGRHHTVDDTIQSFKLARELGFD-NINMDLIIGLPEETL 376

Query: 345 DDFRATMDLVDKIGYAQAFSF 365
           DD R TM+LV  +        
Sbjct: 377 DDVRHTMELVKDMAPDNVTIH 397


>gi|189426449|ref|YP_001953626.1| radical SAM protein [Geobacter lovleyi SZ]
 gi|189422708|gb|ACD97106.1| Radical SAM domain protein [Geobacter lovleyi SZ]
          Length = 484

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 55/317 (17%), Positives = 98/317 (30%), Gaps = 47/317 (14%)

Query: 80  VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL 139
           +   L ++  L            +VV G  A     + + R    +V +  +  + L ++
Sbjct: 82  MVHTLWQMEELSVLIKTVCPRTCIVVGG-YATMLKNDAVLRWTCADVAIRGEGEFALVDV 140

Query: 140 LERARFGKRVVDTD--------------------------YSVEDKFERLSIVDGGYNRK 173
           LER + GK   D                                D F+  + V  G    
Sbjct: 141 LERIKQGKSFADIPGVAYKDQEGIHSAATRKPEFSLDQKGVPDWDLFDVEAYVQSGSKLL 200

Query: 174 RGVTA--------FLTIQEGCDKFCTFC---VVPYTRGIEISRSLSQVVDEARKLIDNGV 222
                         +    GC   CTFC    +  T       S++ V    + L D   
Sbjct: 201 SHHLGVFQNQRFFPVITTRGCPYRCTFCSNNQLIQTHNPYRRHSVAFVAAMIKGLHDR-- 258

Query: 223 CEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHG 282
                   N   +  +     K     LL  L  +   + +           + L   + 
Sbjct: 259 -----YAINHFKFLDELSFLNKSDVVQLLDELDTMGLKITIEAICRVGLFGDNDLALVNR 313

Query: 283 DLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGE 342
                   L   ++SGS RIL+ MN++ +  E+      + +    I+  ++ IVG+P E
Sbjct: 314 MKAAGFTRLFYSLESGSPRILELMNKQISVEEFSAQKRVLDAA--GISSGTNVIVGYPTE 371

Query: 343 TDDDFRATMDLVDKIGY 359
           T +D   T  +  +   
Sbjct: 372 TAEDIARTFTVCLENRI 388


>gi|148269188|ref|YP_001243648.1| radical SAM domain-containing protein [Thermotoga petrophila RKU-1]
 gi|147734732|gb|ABQ46072.1| Radical SAM domain protein [Thermotoga petrophila RKU-1]
          Length = 447

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 51/284 (17%), Positives = 99/284 (34%), Gaps = 24/284 (8%)

Query: 93  SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDT 152
             +K   D+ +V+ G   +   E   +      +V        LP  LE   F  + +  
Sbjct: 128 RFLKSRYDVPIVLGGVYPRLFPEHAKKSG---AIVYEKGDLVFLPSFLESLGFPSKEIPA 184

Query: 153 DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVD 212
           D+     FE    +   YNR   +    T+  GC   C++C V         R+  +VV+
Sbjct: 185 DW-----FEVFDPMYELYNRVGYLVFITTL--GCPFRCSYCAVHRLWNGLRVRTPERVVE 237

Query: 213 EARKLID-NGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT-SHP 270
              K ++   V ++      + A            F DLL  + E +  VR       H 
Sbjct: 238 TIEKYLNIFKVEDVVFFDDAILAS---------GRFKDLLKLIVEKRWPVRFHLPNGIHA 288

Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330
           R + +       + +     + L  ++      ++  + +     R      ++   +  
Sbjct: 289 RLLDEETAFLLKEAN--FRTIKLGYETSGRLQRETGGKVYDEDLVRAARILRKAGFTEKE 346

Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
           +S+  +V  PG+T +D    + +    G       +Y+P  GT 
Sbjct: 347 VSAYIMVNMPGQTKEDVLNAIKVCLSEGIG-ISINEYTPIPGTK 389


>gi|154175206|ref|YP_001409042.1| quinone-reactive Ni/Fe hydrogenase, large subunit [Campylobacter
           curvus 525.92]
 gi|112804027|gb|EAU01371.1| quinone-reactive Ni/Fe hydrogenase, large subunit [Campylobacter
           curvus 525.92]
          Length = 406

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 41/241 (17%), Positives = 85/241 (35%), Gaps = 21/241 (8%)

Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAF-LTIQEGCDKFCTFCVVPYT 198
           ++    G        + ED +E L   DG   +K GV  F +     CD  C+FC +   
Sbjct: 6   IKGHHSGHPNKSEFATKEDLYEFLE--DGVPEQKEGVIYFHVPF---CDTICSFCSM--- 57

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258
                S+   ++ D  + L+               ++      G   T +     L +I 
Sbjct: 58  ---NRSKLDGELDDYTQYLLGEIDKYSKFSYIQQKSFESVYFGGGTPT-TLKERHLEKIL 113

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVL-------MPYLHLPVQSGSDRILKSMNRRHT 311
             +  ++  S   + S      + ++  +       +    + VQ+ S+   K +NR H+
Sbjct: 114 KAINEKFNISKTCEFSFETTLHNLNISKVRLMQSLGVNRFSIGVQTFSEAGRKLLNRTHS 173

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
                + + +I+       + +D I  +P ET+++ R    ++  I       +      
Sbjct: 174 KEAAIEHLKKIKDEFKGF-VCTDIIYNYPNETEEEVREDARILKDIAVDSTSFYSLQFLD 232

Query: 372 G 372
           G
Sbjct: 233 G 233


>gi|150020836|ref|YP_001306190.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Thermosipho melanesiensis BI429]
 gi|149793357|gb|ABR30805.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Thermosipho melanesiensis BI429]
          Length = 375

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 82/225 (36%), Gaps = 16/225 (7%)

Query: 186 CDKFCTFCV-VPYTRGIEISRSLSQV--VDEARKLIDNGVCEITLLGQNVNAWRGKGLDG 242
           C K C +C  V YT G   +   + +  +    K ++ G+  +  +G    ++  +    
Sbjct: 24  CKKKCYYCDFVSYTEGSVENYIEALITELKLYEKYLEKGIKTL-YIGGGTPSYINEHYIE 82

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
           +   F +    L E    V      S        L             + L +QS  D +
Sbjct: 83  KLVMFLNKYLQLEEFTIEVNPDSFDSEKAYFYKSL---------GTNRISLGIQSLDDTV 133

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           LK   R H +Y+  +  +  + +  +I +  DFI+G PGE+       +D +        
Sbjct: 134 LKRAGRTHNSYQAYKAYEIAKGIFNNINV--DFIIGLPGESWKSIEKIVDFIRLEHPKHI 191

Query: 363 FSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFND 407
             +      GT  S +++++ +    ER   L   L+ +     +
Sbjct: 192 SVYLLEIHEGTFLSKIMKKIPDE-SFERHDALLDFLKTEGYERYE 235


>gi|152995393|ref|YP_001340228.1| radical SAM domain-containing protein [Marinomonas sp. MWYL1]
 gi|150836317|gb|ABR70293.1| Radical SAM domain protein [Marinomonas sp. MWYL1]
          Length = 755

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 44/285 (15%), Positives = 85/285 (29%), Gaps = 47/285 (16%)

Query: 132 TYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT-------------A 178
             +    L+++    +  V+      +  E   + D  Y R                   
Sbjct: 321 NPHNARALIQKHGKKEIWVNPPPIPLETPEMDGVFDLPYARVPHPKYKKARIPAYDMIKT 380

Query: 179 FLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDN----GVCEITLLGQNVN 233
            + I  GC   CTFC +    G  I SRS   ++ E   + D           L G   N
Sbjct: 381 SINIMRGCFGGCTFCSITEHEGRVIQSRSHESILKEIEDIKDKVPGFTGHISDLGGPTSN 440

Query: 234 AWR----------------------GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPR 271
            +                          L+ +    + L      I+G+  +   +    
Sbjct: 441 MYTLNCNDDEVQASCRKLSCVYPTICSNLNTDHSPTTQLYRKTRAIEGIHTVSIASGLRY 500

Query: 272 DMSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRRH--TAYEYRQIIDRI-RSVR 326
           D++    +   +L    +   L +  +      L  M +    T   ++++ D+  +   
Sbjct: 501 DLAVEDPEYVRELVTHHVGGLLKIAPEHSEQGTLSKMMKPGMGTYDRFKRMFDKYSKEAG 560

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGY--AQAFSFKYSP 369
               +   FI   PG +D+D       +    +   Q  +F  SP
Sbjct: 561 KKQHLIPYFIAAHPGSSDEDMLNLAVWLKTNDFKPDQVQTFYPSP 605


>gi|56751732|ref|YP_172433.1| coproporphyrinogen III oxidase [Synechococcus elongatus PCC 6301]
 gi|81301191|ref|YP_401399.1| coproporphyrinogen III oxidase [Synechococcus elongatus PCC 7942]
 gi|56686691|dbj|BAD79913.1| oxygen independent coprophorphyrinogen III oxidase [Synechococcus
           elongatus PCC 6301]
 gi|81170072|gb|ABB58412.1| coproporphyrinogen III oxidase, anaerobic [Synechococcus elongatus
           PCC 7942]
          Length = 396

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 34/206 (16%), Positives = 73/206 (35%), Gaps = 12/206 (5%)

Query: 175 GVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA 234
            + A+L I   C + C +C  P +   +  R         R+ +D    EI        A
Sbjct: 5   PIAAYLHIPF-CRRRCFYCDFPISVVGDRLRGDQS--GMIRQYVDAICQEIAATPVLGPA 61

Query: 235 WRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLI-------KAHGDLDVL 287
            +     G   +       L  I   +  R+  +   ++S  +        +A     + 
Sbjct: 62  LQTVFFGGGTPSL-LSPNQLDRILQTLDRRFGIAATAEISIEMDPASFDRSQAIATRQLG 120

Query: 288 MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDF 347
              + +  Q+  D +L+   R H   +  + +  +R+   +  +S D I G P +T  D+
Sbjct: 121 FNRVSIGAQAFQDGLLERCGRTHRRADIDRAVADLRAAGFE-NLSLDLISGLPEQTLADW 179

Query: 348 RATMDLVDKIGYAQAFSFKYSPRLGT 373
           +A+++    +      ++       T
Sbjct: 180 QASLEAAIALEPTHLSAYDLVLEPET 205


>gi|111221442|ref|YP_712236.1| coproporphyrinogen III oxidase [Frankia alni ACN14a]
 gi|111148974|emb|CAJ60654.1| putative oxygen-independent coproporphyrinogen III oxidase
           (Coproporphyrinogenase) (Coprogen oxidase) [Frankia alni
           ACN14a]
          Length = 411

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 44/227 (19%), Positives = 81/227 (35%), Gaps = 17/227 (7%)

Query: 163 LSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV-----PYTRGIEIS-RSLSQVVDEARK 216
           L         +R + A++ +   C   C +C           G  +S   L+  VD A K
Sbjct: 17  LPPAALAELTERALGAYVHVPY-CAARCGYCDFNTYTAADLGGALVSSVGLTTFVDIATK 75

Query: 217 LIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS--DLLYSLSEIKGLVRLRYTTSHPRDMS 274
            I   +    L   ++         G     S  DL   L  +     L        + +
Sbjct: 76  EIR--LARAVLGDADLPISTVFIGGGTPTLLSAGDLARLLHALDAEFGLAADAEVTTEAN 133

Query: 275 DCLIKAHGDLDVL----MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330
              +     L+ L       +   +QS    +L +++RRHT     +++   R    +  
Sbjct: 134 PESVDP-AQLEQLRAAGYTRVSFGMQSDRPHVLAALDRRHTPGRVSEVMRWARKAGFE-Q 191

Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
           +S D I G PGE++ D+ A++    ++G     ++  +   GT  S 
Sbjct: 192 VSLDLIYGAPGESEADWAASLRAAVQLGPDHVSAYALTVEEGTKLSR 238


>gi|332297314|ref|YP_004439236.1| Radical SAM domain protein [Treponema brennaborense DSM 12168]
 gi|332180417|gb|AEE16105.1| Radical SAM domain protein [Treponema brennaborense DSM 12168]
          Length = 358

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 36/219 (16%), Positives = 70/219 (31%), Gaps = 19/219 (8%)

Query: 176 VTAFLTIQEGCDKFCTFCVVPYTR-GIEISR-SLSQVVDEARKLIDNGVCEITLLGQNVN 233
           +   + I   C   C +C + Y    +E  R + +Q++D  R+    G     L G    
Sbjct: 55  IRGLIEISNCCRNDCLYCGIRYGNDTVERYRLTDAQILDSCRRGYALGFRTFVLQG---- 110

Query: 234 AWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY--- 290
              G+         S L+ ++        L  +            K  G    L+ +   
Sbjct: 111 ---GEDEAFHPERISRLIRTIKTAHPDCALTLSLGEYPKEVYAEWKRSGADRYLLRHESA 167

Query: 291 --LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFR 348
              H     G+    + +    TA   +Q +  ++S+       + F+VG P +T     
Sbjct: 168 NPTHYAFLHGAP---RDVRNGRTAAYRQQCLYNLKSL--GYQTGAGFMVGTPKQTPAHLA 222

Query: 349 ATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
             M  ++ +         + P   TP     +   E  +
Sbjct: 223 EDMRFLEDLQPHMIGIGPFIPHPHTPLGLYPDTPPETER 261


>gi|187930548|ref|YP_001901035.1| coproporphyrinogen III oxidase [Ralstonia pickettii 12J]
 gi|187727438|gb|ACD28603.1| oxygen-independent coproporphyrinogen III oxidase [Ralstonia
           pickettii 12J]
          Length = 494

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 39/229 (17%), Positives = 82/229 (35%), Gaps = 19/229 (8%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKL--IDNGVCEITLLGQNVNAWRGKGLDGE 243
           C   C +C        + SRS   V   AR++  + N +  +  + Q           G 
Sbjct: 85  CANLCYYCGCNKVITKDHSRSARYVETLAREMAMVANQIGPLRRVTQL--------HWGG 136

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL-------DVLMPYLHLPVQ 296
                     +  +    R  +  ++  ++S  L   H D        ++      L +Q
Sbjct: 137 GTPTFLAHDEMRAVMAATREHFDVANDGEISVELDPRHADDATLEVLAEIGFNRASLGIQ 196

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
                + ++++R  +  E R+++D  R +  + +IS D I G P +  + F AT+D V +
Sbjct: 197 DFDPDVQRAVHRIQSVEETRRVVDTARRLGFE-SISFDLIYGLPYQRTETFNATLDRVLE 255

Query: 357 IGYAQAFSFKYSPRLGT-PGSNMLEQVDENVKAERLLCLQKKLREQQVS 404
           +   +   + Y+           ++ +      E+L  L   +      
Sbjct: 256 MAPDRLSVYSYAHLPHLFKAQRRIDMLTLPTADEKLDLLAMTVERLVAE 304


>gi|317153754|ref|YP_004121802.1| hypothetical protein Daes_2049 [Desulfovibrio aespoeensis Aspo-2]
 gi|316944005|gb|ADU63056.1| Protein of unknown function DUF2344 [Desulfovibrio aespoeensis
           Aspo-2]
          Length = 839

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 55/313 (17%), Positives = 110/313 (35%), Gaps = 40/313 (12%)

Query: 139 LLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
           L+      ++ V  D      F R + V  G    R     + I  GC + C FC     
Sbjct: 214 LVAGYETVEKAVVDDLDAA-PFPRRTAVPYGAVHDRLT---MEIARGCTRGCRFCQAGMI 269

Query: 199 RGIEISRS---LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
                 RS   L  ++   R L + G  E ++L  +   +        +         +S
Sbjct: 270 YRPVRERSLDTLDDIL--TRGLAETGYEETSILSLSTGDFSALDTFFTRSFDKCAAEQIS 327

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
                  +   +     +S  +++    +        L  ++GS R+   +N+  T    
Sbjct: 328 -------ISLPSLRVGSLSAPIMERISSIRR--TGATLAPEAGSQRLRDVINKGVTEA-- 376

Query: 316 RQIIDRIRSVRPDI--AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF-------- 365
            ++++ +R +  +    +   F++G P ETD D  A +DL  K+    A           
Sbjct: 377 -ELVEHVRLLFENGWQGVKLYFMIGLPTETDADLDAIVDLCIKVR-DAAGWHIKRLQVTA 434

Query: 366 ---KYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLR---EQQVSFNDACVGQIIEVLIE 419
               + P+  TP      Q+       R+  L+ + R      + F++  +   +E L  
Sbjct: 435 AVSPFVPKPQTP-FQWDPQLPYAEIYRRIGYLRDRFRAHKRINLKFHEPEM-TTLEGLFS 492

Query: 420 KHGKEKGKLVGRS 432
           +  +   ++V R+
Sbjct: 493 RGDRRLAEVVERA 505


>gi|209694542|ref|YP_002262470.1| lipoyl synthase [Aliivibrio salmonicida LFI1238]
 gi|226781784|sp|B6EIF3|LIPA_ALISL RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|208008493|emb|CAQ78664.1| lipoyl synthase (lipoic acid synthase) [Aliivibrio salmonicida
           LFI1238]
          Length = 321

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 28/182 (15%), Positives = 61/182 (33%), Gaps = 10/182 (5%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V    G  ++    +    A+ + D  +  + +   +    R    DG   
Sbjct: 94  CTRRCPFCDV--AHGRPVTPEAEEPKKLAKTIKDMKLKYVVITSVD----RDDLRDGGAQ 147

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
            F+D    + E+   +R+       R   D  + A        P +       + R+ + 
Sbjct: 148 HFADCNREIRELNPEIRIETLVPDFRGRMDRALDAMHSNP---PDVFNHNLETAPRLYRK 204

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           +           ++ + +   P +   S  ++G  GET ++    +  +   G       
Sbjct: 205 VRPGANYQWSLDLLKKFKEQHPTVPTKSGVMMGL-GETKEEIVEVLKDLRAHGVTMLTLG 263

Query: 366 KY 367
           +Y
Sbjct: 264 QY 265


>gi|169343519|ref|ZP_02864518.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Clostridium perfringens C str. JGS1495]
 gi|169298079|gb|EDS80169.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Clostridium perfringens C str. JGS1495]
          Length = 377

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 37/245 (15%), Positives = 90/245 (36%), Gaps = 24/245 (9%)

Query: 186 CDKFCTFCVVPYTRGI--EISRSLSQVVDEA---RKLIDNGVCEITLLGQNVNAWRGKGL 240
           C + C +C  P            +  +  E    R+  +N       +G    +      
Sbjct: 13  CAQKCLYCDFPSFARKDHLRKAYIEALNKEIISLREKHNNLEINTIFIGGGTPSVLEADE 72

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTT-SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
                    LL  ++++     + Y+   +P ++++  ++        +  + + +Q+  
Sbjct: 73  ------LECLLKEVAKLNMAKDIEYSMECNPGNLTEEKLEVMKKYG--VNRISMGLQAKQ 124

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
           D +LK + R H    +++     + V  +  I+ D + G P +  +++  T+  +  +  
Sbjct: 125 DNLLKGLGRIHNYKTFKENFLLAKKVGFN-NINIDLMFGLPNQRLNEWEETLREIISLEP 183

Query: 360 AQAFSFKYSPRLGTPGSNMLE----QVDENVKAERLLCLQKKLREQ----QVSF-NDACV 410
           A   ++      GT   N+ E    ++    +  ++  L KK+ E+    Q    N A  
Sbjct: 184 AHISAYSLIIEEGTAFYNLYENDKLKLPTEEEERKMYHLAKKILEENGFNQYEISNYAKE 243

Query: 411 GQIIE 415
           G+   
Sbjct: 244 GKECR 248


>gi|313906221|ref|ZP_07839567.1| cobalamin B12-binding domain protein [Eubacterium cellulosolvens 6]
 gi|313468951|gb|EFR64307.1| cobalamin B12-binding domain protein [Eubacterium cellulosolvens 6]
          Length = 579

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 43/202 (21%), Positives = 74/202 (36%), Gaps = 10/202 (4%)

Query: 153 DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVD 212
           D      F R    + G    R    +     GC   C++C+    R     RSL +V +
Sbjct: 168 DLDEIPFFYRDMAGEEGMEVFRHRIIYYESSRGCPFSCSYCL-SSLREKVRFRSLPKVCE 226

Query: 213 EARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
           E +  +D GV ++  + +  N      +   +         + E    +   +       
Sbjct: 227 ELQFFLDAGVPQVKFVDRTFNCNHRHAMGIWQY--------IREHDNKLTNFHFEIAADL 278

Query: 273 MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAIS 332
           ++D  I     L   +  L + VQS +   L +++R       R + +RIR  + +I   
Sbjct: 279 LTDEEIDFLSTLRPGLVQLEIGVQSTNPDTLAAIDRVQNMDHLRSVTERIRGGK-NIHQH 337

Query: 333 SDFIVGFPGETDDDFRATMDLV 354
            D I G P E    FR + D V
Sbjct: 338 LDLIAGLPHEDVVSFRRSFDEV 359


>gi|157377350|ref|YP_001475950.1| hypothetical protein Ssed_4218 [Shewanella sediminis HAW-EB3]
 gi|157319724|gb|ABV38822.1| radical SAM N-terminal domain protein [Shewanella sediminis
           HAW-EB3]
          Length = 774

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 34/232 (14%), Positives = 76/232 (32%), Gaps = 42/232 (18%)

Query: 176 VTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEAR------------------- 215
           +   + I  GC   C+FC +    G  I SRS   +V+E +                   
Sbjct: 375 IKTSINIMRGCFGGCSFCSITEHEGRIIQSRSQESIVNEIKDIQGKVPGFTGVISDLGGP 434

Query: 216 -----------KLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
                      +  +     ++ +  ++                DL  +  ++ G+ ++ 
Sbjct: 435 TANMYHLGCKSEKAEQTCRRLSCIFPDICGHMDTDHQPTI----DLYRAARDLPGIKKIL 490

Query: 265 YTTSHPRDMSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRR--HTAYEYRQIID 320
             +    D++    +   +L    +  YL +  +      L  M +    +   ++++ D
Sbjct: 491 IASGVRYDLASEDPRYVKELATHHVGGYLKIAPEHTEKGPLDMMMKPGMGSYDRFKELFD 550

Query: 321 RI-RSVRPDIAISSDFIVGFPGETDDDFRATMDLV--DKIGYAQAFSFKYSP 369
           +  +       +   FI   PG T++D       +  +K    Q  +F  SP
Sbjct: 551 KYSKEAGKKQYLIPYFISAHPGTTNEDMVNLALWLKGEKFKLDQVQNFYPSP 602


>gi|299138056|ref|ZP_07031236.1| Radical SAM domain protein [Acidobacterium sp. MP5ACTX8]
 gi|298599986|gb|EFI56144.1| Radical SAM domain protein [Acidobacterium sp. MP5ACTX8]
          Length = 508

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 59/333 (17%), Positives = 114/333 (34%), Gaps = 41/333 (12%)

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +     +  +  +   D  +++ G       ++ L ++  V+ VV  Q    L EL++ 
Sbjct: 77  MIRETVEIARAVKEWNPDFPIILGGWHPSLLPDQTL-QADCVDYVVRGQGEDALLELVQH 135

Query: 143 ARFG---------------------KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLT 181
            +                       +R +     +  K   ++  D          A  T
Sbjct: 136 LQSHSAPDLIAGIGFKRGGKLIMTPERPLKPLMDMPPKAYHIADFDAYERGCGKRWAMYT 195

Query: 182 IQEGCDKFCTFCVVPYTRGIEISR-SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL 240
               C   C +C      G + +     Q V+E   L      E+  +  +        L
Sbjct: 196 SSLACPFNCGYCTNAGVYGRKWNALPPEQFVEETVDLTRRYQLEMLWVVDD---NFMVDL 252

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300
           D  +     L+   S+ K  V+            D  +     L  +       V SGS 
Sbjct: 253 DRVRGIAEGLVREKSQFKWSVQATTNMVARLSHEDLTLLRRAGLQQICQ----GVDSGSP 308

Query: 301 RILKSMNRRHTAYEYRQIID-RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV----D 355
           ++L+ MN+  T  ++ QI +   R +  DI  S + I  FPGE   + R T++ +     
Sbjct: 309 KVLQLMNK--TFQDFDQIYESAARCLAADIRPSFNIIFAFPGEGMTERRETINFMMDVCR 366

Query: 356 KIGYAQAFSFKYSPRLGTP----GSNMLEQVDE 384
           +   A+ ++  ++P  G+P       M  +V +
Sbjct: 367 RFPGAEFWTNIFTPYPGSPIMKRAQEMGIEVPK 399


>gi|152981087|ref|YP_001354942.1| lipoyl synthase [Janthinobacterium sp. Marseille]
 gi|179307988|sp|A6T345|LIPA_JANMA RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|151281164|gb|ABR89574.1| lipoic acid synthetase [Janthinobacterium sp. Marseille]
          Length = 331

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 74/208 (35%), Gaps = 12/208 (5%)

Query: 161 ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN 220
           E  S  + G    +G   F+ + + C + C FC V + R   +   +++  + A+ +   
Sbjct: 72  EEASCPNIGECFGKGTATFMIMGDKCTRRCPFCDVGHGRPDPL--DVNEPENLAKTIAAL 129

Query: 221 GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKA 280
            +  + +   +    R    DG    F++ +  + E+    R+       R   D  ++ 
Sbjct: 130 RLNYVVITSVD----RDDLRDGGAGHFAECIRRVRELSPNTRIEILVPDFRGRMDRALEI 185

Query: 281 H-GDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGF 339
                  +M +        + R+ K             ++ R ++  P+    S  +VG 
Sbjct: 186 LNAAPPDVMNHNL----ETAPRLYKEARPGSDYEYSLNLLKRFKAQHPNTPTKSGIMVGL 241

Query: 340 PGETDDDFRATMDLVDKIGYAQAFSFKY 367
            GETD++    M  +           +Y
Sbjct: 242 -GETDEEVLQVMRDMRAHDVDMLTIGQY 268


>gi|312797468|ref|YP_004030390.1| Oxygen-independent coproporphyrinogen-III oxidase [Burkholderia
           rhizoxinica HKI 454]
 gi|312169243|emb|CBW76246.1| Oxygen-independent coproporphyrinogen-III oxidase (EC 1.3.99.22)
           [Burkholderia rhizoxinica HKI 454]
          Length = 487

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 75/230 (32%), Gaps = 18/230 (7%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           CD  C +C          SR+ S V    ++L        TL GQ     +     G   
Sbjct: 88  CDTVCFYCGCNKVITKNRSRADSYVEALGQELALQS----TLFGQGRRIRQLHWGGGTPT 143

Query: 246 TFSDL--LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL------DVLMPYLHLPVQS 297
               L  +  ++ I     L           +   +A  D       +     L L VQ 
Sbjct: 144 FLCQLQIMQLMNSIGEHFMLTPDWDDVEYSIEIDPRAIDDSTIAALRERGFNRLSLGVQD 203

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
               + +++NR          I + R      +IS D I G P +T   +  T+D +  +
Sbjct: 204 VDPLVQQAVNRVQPREMTANAIRQARESGYK-SISVDLIYGLPHQTVASYARTLDTIIDL 262

Query: 358 GYAQAFSFKYSPRLGTPGSNMLEQVDENV---KAERLLCLQKKLREQQVS 404
              +   F YS         M  Q+D N     A+RL  LQ  +     +
Sbjct: 263 APDRLSVFAYSHLPHL--FKMQRQIDSNALPSPAQRLAILQLVIERLSDA 310


>gi|307595365|ref|YP_003901682.1| Radical SAM domain-containing protein [Vulcanisaeta distributa DSM
           14429]
 gi|307550566|gb|ADN50631.1| Radical SAM domain protein [Vulcanisaeta distributa DSM 14429]
          Length = 514

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 83/224 (37%), Gaps = 17/224 (7%)

Query: 177 TAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR 236
            A L +  GC + C FC+  +         ++ +     + +        + G ++    
Sbjct: 202 PAVLEVMRGCPRGCLFCMEGFVSRPVRFADITSIKGLILRDLG---RNGIINGVSLIGLS 258

Query: 237 GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQ 296
                G K   + L+  L      + +   +     +   +I+           L +  +
Sbjct: 259 VTDHPGFKELMNFLVNEL-----KLNVSVPSLRVDTLDRDIIRLIAKGGQ--RVLTIAPE 311

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFR---ATMDL 353
           S S+R+ K++ +  +  +  +I     SV  D  +   F+VG PGE D+D +     +  
Sbjct: 312 S-SERLRKALGKGFSDDDVVKIAMDAVSVGID-HLKLYFMVGLPGEGDEDIKSIVNLLTR 369

Query: 354 VDKIGYAQ-AFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQK 396
           + ++G         + P+  TP    L   D+ V  +R+  L+ 
Sbjct: 370 LRRLGIKHSLSVNPWIPKPHTP-LQWLPMADDKVINDRIKTLRD 412


>gi|326203733|ref|ZP_08193596.1| Radical SAM domain protein [Clostridium papyrosolvens DSM 2782]
 gi|325986173|gb|EGD47006.1| Radical SAM domain protein [Clostridium papyrosolvens DSM 2782]
          Length = 558

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 36/183 (19%), Positives = 63/183 (34%), Gaps = 16/183 (8%)

Query: 186 CDKFCTFCVVP-YTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGE 243
           C   C FC    Y RG  I   +  V ++   L+D         L  N            
Sbjct: 290 CPYKCAFCTQSDYDRGSVIGGEVENVFNDITTLMDKYNTKYFYFL--NNAFNYSVEF--- 344

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
             + S     + E  G        +   +M+   ++       +   L    ++GS +IL
Sbjct: 345 --SNSFCRKVIHE--GTKFYWSDCARFNNMTYERLELMRKAGCI--KLTFGFETGSPKIL 398

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
             ++++       Q++     +   I    + IVG P ET +DF+ T D ++K       
Sbjct: 399 NLIDKKLDISHSEQVLKWCHEL--GIWADIEIIVGLPQETAEDFKYTYDYIEKNR-EYIN 455

Query: 364 SFK 366
            F 
Sbjct: 456 YFW 458


>gi|113477014|ref|YP_723075.1| radical SAM family protein [Trichodesmium erythraeum IMS101]
 gi|110168062|gb|ABG52602.1| Radical SAM [Trichodesmium erythraeum IMS101]
          Length = 540

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 56/237 (23%), Positives = 96/237 (40%), Gaps = 26/237 (10%)

Query: 179 FLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK 238
            + +   C + C FC+  Y      S SL + +  A     N    + LLG +V      
Sbjct: 228 MVEVVRSCPEMCRFCLASYLTLPFRSASLEESLIPAIARGLNVTKRLGLLGASVTQH--- 284

Query: 239 GLDGEKCTFSDLLYSLSEIK-GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQS 297
                   F  LL  LS+ K   +RL   +     +++ L K   + D     + + ++S
Sbjct: 285 ------PEFESLLDYLSQSKYDDIRLSIASVRTNTVTEKLAKILANRDT--KSITIAIES 336

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDF--IVGFPGETDDDFRATMDLVD 355
           GSDR+ K +N++    E  +II    + +        F  +VG PGE ++D  AT++++ 
Sbjct: 337 GSDRLRKIINKK---LENEEIIQAAINAKAGGLKGIKFYGMVGLPGEEEEDLDATVEMIL 393

Query: 356 KIGYA------QAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFN 406
            +  A            + P+  TP              +RL  L+KKLR + + F 
Sbjct: 394 TLKKAVPGLRLSLGCSTFVPKSHTPFQWFGVNYQSE---KRLRFLEKKLRSKGIDFR 447


>gi|228470355|ref|ZP_04055259.1| biotin synthase [Porphyromonas uenonis 60-3]
 gi|228308098|gb|EEK16973.1| biotin synthase [Porphyromonas uenonis 60-3]
          Length = 349

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 35/242 (14%), Positives = 75/242 (30%), Gaps = 37/242 (15%)

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE-ISR-SLS 208
           DT    E +    ++ +  + R+  +   + I   C   C +C +          R +  
Sbjct: 30  DTHLEHELQVRAKTLAELQFGRRIYLRGLIEISNVCRNDCYYCGIRSGNERVTRYRLTAD 89

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
           +V+    +  + G     L G     WRG                L  +   +R  Y   
Sbjct: 90  EVMSACERGYEIGFRTFVLQGGEDPYWRG--------------ERLVSLVRNIRTSYPEC 135

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII-------DR 321
                       + + + L         +G++R L   +  +    Y  +         R
Sbjct: 136 AITLSLGE--MEYAEYEAL-------FHAGANRYL-LRHETYDKEHYESLHPSTMAQEHR 185

Query: 322 IRSVRP----DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
           ++++R        + +  ++G PG+T       +D + ++  A      + P   TP   
Sbjct: 186 LQALRDLKQIGYQVGTGVMIGSPGQTTAHLAQDLDFIHRLQPAMIGVGPFIPHEDTPLGT 245

Query: 378 ML 379
             
Sbjct: 246 YP 247


>gi|92118199|ref|YP_577928.1| radical SAM family protein [Nitrobacter hamburgensis X14]
 gi|91801093|gb|ABE63468.1| Radical SAM [Nitrobacter hamburgensis X14]
          Length = 527

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 54/360 (15%), Positives = 117/360 (32%), Gaps = 48/360 (13%)

Query: 57  NSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEE 116
              + A+ + ++  HI      +  + + R  +          DL V + G    A  + 
Sbjct: 71  EDFEWAEAVFVSGMHI----QRQQMNDICRRAHA--------FDLSVALGGPSVSACPD- 117

Query: 117 ILRRSPIVNVVVGPQTYYRLPELLER-----ARFGKRVVDTDYSVEDKFERLSIVDGGYN 171
                P  + +   +      +L+ R     +R   ++V       D            +
Sbjct: 118 ---YYPSFDYLHVGELGDATDDLIGRLARDPSRPDGQIVLKTADRLDMTRFPIPAYELAD 174

Query: 172 RKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVC-EITLLG 229
            K      +    GC   C FC +P   G     ++  Q+  E  KL++ G+   +  + 
Sbjct: 175 IKHYFLGSIQYSSGCPYQCEFCDIPGLYGRNPRLKTPEQITRELDKLLECGITGSVYFVD 234

Query: 230 QNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL--VRLRYTTSHPRDMSDCLIKAHGDLDVL 287
            N          G +    DLL  L E +      LR++     +++          +  
Sbjct: 235 DNFI--------GNRKAALDLLPHLIEWQKKTGFVLRFSCEATLNIAKRPEILSQMREAF 286

Query: 288 MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP-DIAISSDFIVGFPGETDDD 346
              +   +++     LK+M++ H       I+D IR++    + + S  I+G   +  + 
Sbjct: 287 FATIFCGIETPDPVALKAMHKDHN--MVVPIMDAIRTLNDYGMEVVSGIILGLDTDKSET 344

Query: 347 FRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFN 406
            +  ++ +D+                TP              +RL    + + ++    N
Sbjct: 345 GQHLLEFIDRSQIPLLTINLLQALPKTPL------------WDRLKRENRLIEDEARDSN 392


>gi|255320742|ref|ZP_05361917.1| lipoyl synthase [Acinetobacter radioresistens SK82]
 gi|262379480|ref|ZP_06072636.1| lipoyl synthase [Acinetobacter radioresistens SH164]
 gi|255302119|gb|EET81361.1| lipoyl synthase [Acinetobacter radioresistens SK82]
 gi|262298937|gb|EEY86850.1| lipoyl synthase [Acinetobacter radioresistens SH164]
          Length = 337

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 65/208 (31%), Gaps = 12/208 (5%)

Query: 161 ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN 220
           E  +  +       G   F+ + + C + C FC V    G   +    +    A  + + 
Sbjct: 66  EEAACPNLPECFGGGTATFMIMGDICTRRCPFCDV--AHGRPNALDADEPRHMAETIANL 123

Query: 221 GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKA 280
           G+    +   +    R   LDG    F D +    ++     L       R   D  ++ 
Sbjct: 124 GLKYAVITSVD----RDDLLDGGAQHFVDCIKEARQLSPNTLLEILVPDFRGRLDIALRI 179

Query: 281 HGDLDVLMPYLHLPVQSGSDRIL-KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGF 339
             +     P         +   L K+M           ++   +   PDI      +VG 
Sbjct: 180 MTE----CPPDVFNHNIETVPRLYKAMRPGSDYQHSLNLLKMFKEYCPDIPTKCGLMVGI 235

Query: 340 PGETDDDFRATMDLVDKIGYAQAFSFKY 367
            GE +++  A +D +           +Y
Sbjct: 236 -GEKEEEVIALLDDLRAHDVDYVTIGQY 262


>gi|198277223|ref|ZP_03209754.1| hypothetical protein BACPLE_03435 [Bacteroides plebeius DSM 17135]
 gi|198269721|gb|EDY93991.1| hypothetical protein BACPLE_03435 [Bacteroides plebeius DSM 17135]
          Length = 545

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 42/258 (16%), Positives = 83/258 (32%), Gaps = 28/258 (10%)

Query: 99  GDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK----------- 147
              +V + G       E+ LR +  V+ V   +     P+ +   +  K           
Sbjct: 84  PRCVVALGGPEFLGHNEDFLRTNRFVDCVFRGEGEETFPQWIACWQQPKEWTRITGLCFL 143

Query: 148 ----RVVDTDYSVEDKFERL-SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
               +  D   S    F++L +     +         L    GC   C FC V       
Sbjct: 144 DAEGQYHDNGLSRVMAFDKLVNPEQSPFFNWSKPFVQLETTRGCFNTCAFC-VSGGEKPV 202

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            + S+  + +  R + + G+  I +L +  N    +     K  F             +R
Sbjct: 203 RTLSVEAIRERVRLIHEKGIRNIRVLDRTFNYQSHR----AKALFDLFREF-----PDMR 253

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
                 HP  +S+ L +    +   + +L   +QS  + +L    R     +  + +  +
Sbjct: 254 FHLE-IHPALLSEELKQELASMPKGLLHLEAGIQSLHEEVLTVSRRAGKLADALEGLRYL 312

Query: 323 RSVRPDIAISSDFIVGFP 340
                ++   +D I G P
Sbjct: 313 -CALDNMETHADLIAGLP 329


>gi|153840445|ref|ZP_01993112.1| radical SAM protein, family [Vibrio parahaemolyticus AQ3810]
 gi|149745893|gb|EDM57023.1| radical SAM protein, family [Vibrio parahaemolyticus AQ3810]
          Length = 262

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 50/121 (41%), Gaps = 12/121 (9%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +L L +Q+ ++  LK +NR H    Y +I  R R++   I + +  IVG P ET DD   
Sbjct: 84  WLELGLQTANNDTLKRINRGHDFECYAEITQRARAL--GIKVCTHLIVGLPKETRDDNIE 141

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDAC 409
           T+  V  +G             G+  +          KA R   L+    E+ V+     
Sbjct: 142 TLQKVLAVGTDGIKLHGLHIVEGSTMA----------KAWRAGRLEAPGLEEYVAIASEM 191

Query: 410 V 410
           +
Sbjct: 192 I 192


>gi|87125529|ref|ZP_01081374.1| Oxygen-independent coproporphyrinogen III oxidase:Putative oxidase
           [Synechococcus sp. RS9917]
 gi|86166829|gb|EAQ68091.1| Oxygen-independent coproporphyrinogen III oxidase:Putative oxidase
           [Synechococcus sp. RS9917]
          Length = 429

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 49/248 (19%), Positives = 87/248 (35%), Gaps = 31/248 (12%)

Query: 175 GVTAFLTIQEGCDKFCTFC---VVPY------TRGIEISRSLSQVVDEARKLIDNGVCEI 225
             +A++ I   C + C +C   VVP         G              +  +     EI
Sbjct: 4   PRSAYVHIPF-CHRRCFYCDFAVVPLGDRADAAAGPGR--------ASIQAYLALLHEEI 54

Query: 226 TLL--GQNVNAWR---GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKA 280
            L   G  +       G          +DLL  L++  GL      T      S  L   
Sbjct: 55  GLSPAGPPLATVYVGGGTPSLLTPSQIADLLQRLTQRFGLQDGAEITLEMDPASFDLQHL 114

Query: 281 HGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS---DFIV 337
              LD  +  + L  QS  D +L S+ RRH   + +     ++       ++S   D I 
Sbjct: 115 EAVLDAGVTRVSLGGQSFDDGVLASLGRRHRRADLQAACTWLQRALLQGRLTSWSLDLIR 174

Query: 338 GFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ----VDEN-VKAERLL 392
             PG+T+  ++  ++L    G      +  S   GT  +   ++    + ++    ER+ 
Sbjct: 175 NLPGQTEAQWQQQLELALAAGVPHLSVYDLSVEPGTVFAWRQQRGELVLPDDGEAVERIR 234

Query: 393 CLQKKLRE 400
              ++LR+
Sbjct: 235 QTGERLRQ 242


>gi|114330770|ref|YP_746992.1| lipoyl synthase [Nitrosomonas eutropha C91]
 gi|122314288|sp|Q0AI05|LIPA_NITEC RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|114307784|gb|ABI59027.1| lipoic acid synthetase [Nitrosomonas eutropha C91]
          Length = 314

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 35/216 (16%), Positives = 72/216 (33%), Gaps = 12/216 (5%)

Query: 153 DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVD 212
           +  +    E  S  + G    RG   F+ + + C + C FC V    G   +    + + 
Sbjct: 54  ENKLHTVCEEASCPNIGECFGRGTATFMILGDLCTRRCPFCDV--AHGRPHAPDPDEPMH 111

Query: 213 EARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
            A+ +    +  + +   +    R    DG    F+D + ++       R+       R 
Sbjct: 112 LAKSIAVLKLNYVVITSVD----RDDLRDGGAQHFADCIRAIRAQSPQTRIEILVPDFRG 167

Query: 273 MSDCLIKAH-GDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAI 331
             +  ++        +M +    V     R+ K            Q++   ++  P I  
Sbjct: 168 RLEIALEKLSACPPDVMNHNLETV----PRLYKQCRPGADYVHSLQLLKDFKAASPHIPT 223

Query: 332 SSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
            S  ++G  GETD++    M  +           +Y
Sbjct: 224 KSGLMLGL-GETDEEIIGVMQDLRAHQVNMLTIGQY 258


>gi|322434215|ref|YP_004216427.1| Radical SAM domain protein [Acidobacterium sp. MP5ACTX9]
 gi|321161942|gb|ADW67647.1| Radical SAM domain protein [Acidobacterium sp. MP5ACTX9]
          Length = 503

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 61/193 (31%), Gaps = 16/193 (8%)

Query: 183 QEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG 242
             GC   C +C  P +      RS  +V  E   L      +      +V A        
Sbjct: 226 SRGCPYRCNWCAKPISGDRFQLRSPEEVAAELHDLKSLHGVQHIWFSDDVFAL------- 278

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
               +     +  E  G        S    MS+  + A          + + V+SGS +I
Sbjct: 279 -DRRWIQAFATAVESYGTPLPFKIQSRADLMSETTVAALKRAG--CAEIWMGVESGSQKI 335

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISS--DFIVGFPGETDDDFRATMDLVDKIGYA 360
           L +M++          +   R    D  I +      G+PGE   + + T+ LV +    
Sbjct: 336 LNAMSKG----LQLPSVHAARKRLADAGIRACYFLQFGYPGEAWPEIKETIQLVRETQPD 391

Query: 361 QAFSFKYSPRLGT 373
                   P  GT
Sbjct: 392 DIGVSVSYPLPGT 404


>gi|255071289|ref|XP_002507726.1| predicted protein [Micromonas sp. RCC299]
 gi|226523001|gb|ACO68984.1| predicted protein [Micromonas sp. RCC299]
          Length = 435

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 41/206 (19%), Positives = 70/206 (33%), Gaps = 21/206 (10%)

Query: 186 CDKFCTFC--VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-- 241
           C + C +C   +        S      +   R+ +D  + EI L   + +    +G D  
Sbjct: 14  CRRRCHYCDFAISLVGDDAESH---IALQGMRRYVDFLIREIALTPYSSSTCDFEGGDQP 70

Query: 242 -------GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP 294
                  G           L  +   +R R+      ++S  +     D + L  Y+ L 
Sbjct: 71  PLRTVFFGGGTPSLLPPDLLGSVIEALRERFGIDPDAEISMEMDPGTFDAEKLTQYVDLG 130

Query: 295 V-------QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDF 347
           V       QS    +LK   R HT  E R+ +  +R+ R     S D I G PG T + +
Sbjct: 131 VNRVSLGLQSFDANVLKWAGRGHTLEESREALAAVRANRGVERWSLDLISGMPGLTKEAW 190

Query: 348 RATMDLVDKIGYAQAFSFKYSPRLGT 373
             ++     +       +      GT
Sbjct: 191 SDSLKEAIDVAPHHISVYDLQVEEGT 216


>gi|86739970|ref|YP_480370.1| coproporphyrinogen III oxidase [Frankia sp. CcI3]
 gi|86566832|gb|ABD10641.1| coproporphyrinogen III oxidase, anaerobic [Frankia sp. CcI3]
          Length = 411

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 44/235 (18%), Positives = 79/235 (33%), Gaps = 11/235 (4%)

Query: 152 TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV-----PYTRGIEIS-- 204
            D S+      L         +R    ++ +   C   C +C           G  +S  
Sbjct: 6   PDGSLPPDDGALPAAALAEVTRRPFGVYVHVPY-CAARCGYCDFNTYTAADLGGALVSSV 64

Query: 205 --RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
              +   +     +L    + E  L+   V    G            LL  L +  GL  
Sbjct: 65  GLTTFVDIATGEVRLARTVLGEQELVVSTVFVGGGTPTLLTADDLGRLLRILDDGFGLAS 124

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
               T+     S    +           +   +QS    +L +++RRHT     +++   
Sbjct: 125 DAEITTEANPESVDPAQLEQLRAAGYTRISFGMQSSRPHVLAALDRRHTPGRVPEVMRWA 184

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
           R    D  +S D I G PGE++ D+ A++D   ++G     ++  +   GT  S 
Sbjct: 185 RKAGFD-QVSLDLIYGAPGESEADWAASLDAAIQLGPDHVSAYALTVEEGTKLSR 238


>gi|258514850|ref|YP_003191072.1| Radical SAM domain-containing protein [Desulfotomaculum acetoxidans
           DSM 771]
 gi|257778555|gb|ACV62449.1| Radical SAM domain protein [Desulfotomaculum acetoxidans DSM 771]
          Length = 488

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 30/196 (15%), Positives = 66/196 (33%), Gaps = 13/196 (6%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGI-EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK 238
           L    GC+  C +C    T G      S   V++  +++  +          N       
Sbjct: 203 LLTSRGCNYRCDYCAESLTYGRGVRFHSPDYVIEWIKQVRKDYRVNGIYFHDNDFLIY-- 260

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRY-TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQS 297
                +    ++   +       ++++   +    +   +IK       ++  + + V++
Sbjct: 261 -----ENRSREICERIISAGLSGKIKWAIQTRVNRLKPDMIKLLKRAGCIL--VEVGVEA 313

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
            S R L  +N++ T Y   Q I   R+    I+I +  +    GE   D    +  V ++
Sbjct: 314 ASQRELDLVNKQTTVYANEQAIALCRN--EGISIHAYMLTALEGEIIKDLEQRIQWVKRV 371

Query: 358 GYAQAFSFKYSPRLGT 373
             +           GT
Sbjct: 372 KPSTFDWHPLKIHPGT 387


>gi|227508580|ref|ZP_03938629.1| lipoyl synthase [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
 gi|227191912|gb|EEI71979.1| lipoyl synthase [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
          Length = 291

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 36/219 (16%), Positives = 73/219 (33%), Gaps = 13/219 (5%)

Query: 166 VDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEI 225
            + G     G  +F+ +   C + C FC +P+     +   L +    A      G+  +
Sbjct: 44  PNLGECFGSGTASFIILGPNCTRACRFCDIPHGHPKPV--DLMEPYRVAEATKRLGLSHV 101

Query: 226 TLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLD 285
            +   +    R    D     F   +  +  +     +   T   +   DCL K      
Sbjct: 102 VVTSVD----RDDLPDLGADQFVKTINEIRRLNPDTTIEVLTPDFQGHEDCLDKVIAAKP 157

Query: 286 VLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAI-SSDFIVGFPGETD 344
            +  +    V+S +      +  R T     +++  ++   P      +  ++G  GETD
Sbjct: 158 DVFNHNMETVRSITP----KVRHRATYDTSLKVLKYVKQHAPKTTFVKTGIMLGL-GETD 212

Query: 345 DDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           ++    MD +  I        +Y  + G     + E V 
Sbjct: 213 EEVYQLMDDLRAIDVDFLTIGQY-VQPGPKNYRLREWVP 250


>gi|226311614|ref|YP_002771508.1| oxygen-independent coproporphyrinogen III oxidase [Brevibacillus
           brevis NBRC 100599]
 gi|226094562|dbj|BAH43004.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Brevibacillus brevis NBRC 100599]
          Length = 379

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 47/237 (19%), Positives = 76/237 (32%), Gaps = 24/237 (10%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C   C +C                + D    L      EIT   Q +   +   + G   
Sbjct: 12  CTNKCYYCDFNSFVTNN----PQLIWDYLDALKSE--MEITFSQQLIEQVKTIFVGGGTP 65

Query: 246 TFSDL------LYSLSEIKGLVRL--RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQS 297
           TF D       L  + +  G         +      +  + K     ++ +  L   VQS
Sbjct: 66  TFLDHAQMRAFLEMVQKQLGKYWTDDIEFSMEANPGTTDVEKLRIMRELGVNRLSFGVQS 125

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
             D +LK + R H      + ID  + V  D   S D + G P +T D FR T+D     
Sbjct: 126 FDDALLKRLGRIHDQEAVYRSIDNAKKVGFD-NFSIDLMFGLPDQTLDIFRQTLD--KAF 182

Query: 358 GYAQAFSFKYSP--RLGTPGSNML--EQVD---ENVKAERLLCLQKKLREQQVSFND 407
           G        YS      T    +   +Q+    E  + E  + L +++        +
Sbjct: 183 GLGTTHFSAYSLKVEENTLFHTLYQKDQLPLPSEETELEMYMVLIEEMERHGYKQYE 239


>gi|119485464|ref|ZP_01619792.1| hypothetical protein L8106_09991 [Lyngbya sp. PCC 8106]
 gi|119457220|gb|EAW38346.1| hypothetical protein L8106_09991 [Lyngbya sp. PCC 8106]
          Length = 883

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 55/321 (17%), Positives = 97/321 (30%), Gaps = 34/321 (10%)

Query: 114 GEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRK 173
            E++L     V  V  PQ Y    +                 V       SI    Y + 
Sbjct: 197 REDLLLDLAQVPGVYVPQFYDMAADGSVHPNRPDVPKRILRRVATPMPAYSITMVPYIQT 256

Query: 174 RGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNV 232
                 + I+ GC + C FC               Q+VD   K +   G  E +LL    
Sbjct: 257 VHDRLTMEIRRGCTRGCRFCQPGMLTRPARDVEPEQIVDAIEKGMKATGYNEFSLLS--- 313

Query: 233 NAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLH 292
                           ++   L           + S P    D   +   ++   M    
Sbjct: 314 --LSCSDYLALPALGLEVKNRL------KNKSVSLSLPSQRVDRFDENIANIIGGMRQSS 365

Query: 293 LPV--QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDD---F 347
           L    ++G+ R+   +N+  T  E  + +        D  +   F++G PGETD D    
Sbjct: 366 LTFAPEAGTQRMRDIVNKGLTNEELLRGVKTAYEQGWD-KLKLYFMIGLPGETDADVLGI 424

Query: 348 RATMDLVDKIGYA--------QAFSFKYSPRLGTPGSNMLEQVDENVKA--------ERL 391
             T+  + +   A              ++P+  TP         E  +          R+
Sbjct: 425 AETVRWLQRQCTAPKRRRLNINLTISNFTPKPHTPFQWHSVSTAEFERKQQLLKAEFRRM 484

Query: 392 LCLQKKLREQQVSFNDACVGQ 412
             ++    + ++S  +  VG+
Sbjct: 485 KGIKANFTDIRISAMEDFVGR 505


>gi|320006776|gb|ADW01626.1| cobalamin B12-binding domain protein [Streptomyces flavogriseus
           ATCC 33331]
          Length = 680

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 65/350 (18%), Positives = 125/350 (35%), Gaps = 46/350 (13%)

Query: 54  ERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAE 113
           E  + + + D++ L +C++        ++F  +++  K  + +   D+LVV  G      
Sbjct: 57  EMADGITEPDVLAL-SCYV--------WNFRRQMKVAKILKERY-PDMLVVAGGPHVPDR 106

Query: 114 GEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYN-- 171
             +   + P V+V+   +      ELL  AR     V T        ER + V G     
Sbjct: 107 VGDFFTQHPYVDVLAHGEGEVAFRELL-SARLQDAPVYTGVPGVTVNERNAPVAGPPAKR 165

Query: 172 -----------------------RKRGVTAFLT--IQEGCDKFCTFCVV-PYTRGIEISR 205
                                  R+RG+  +       GC   C FC     T       
Sbjct: 166 LPRRIETPSPYLNGVMDGAVKTCRERGLRFYALWETNRGCPYSCAFCDWGSATMSALRMF 225

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
              +V  E      N V ++ +   N         D E         + +     +R+ +
Sbjct: 226 EEERVQHEIEWFARNDVEDLFICDANFGI---MPRDLEIAHALAEARTEAGSPKQIRVNF 282

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
              +  D    + KA  D D+LM    L +QS    +L++++R++   +  + + + R  
Sbjct: 283 -AKNSNDRVFDISKAWHDADLLMG-TTLSMQSTDMDVLEAIDRKNIGLDNYRKLQQ-RYA 339

Query: 326 RPDIAISSDFIVGFPGETDDDFRATM-DLVDKIGYAQAFSFKYSPRLGTP 374
             +I   ++ I+G P ET   FR  +  L++   +     +++      P
Sbjct: 340 VENIHTYTELILGLPLETARTFREGIGSLLEAGNHEDIRVYEFGILPNAP 389


>gi|268608882|ref|ZP_06142609.1| ELP3 component of the RNA polymerase II complex [Ruminococcus
           flavefaciens FD-1]
          Length = 360

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 70/198 (35%), Gaps = 9/198 (4%)

Query: 185 GCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK 244
           GC   C+FC      G          V E      + V         +  + G      +
Sbjct: 14  GCPHKCSFCDQNTISGA-QHLPDGNEVREICTKALSEVKSPE--DTEIAFFGGSFTAIPR 70

Query: 245 CTFSDLLYSLSEI--KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
               +LL +  E   +G  R    ++ P  +++ ++       V    + L  QS SD++
Sbjct: 71  DYMLELLEAAHEFVGEGKFRGIRCSTRPDCINNEVLSLLKTYGVTA--IELGAQSMSDKV 128

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           L++  R HTA +       IR       +    ++G    T DD   TM+ + +I     
Sbjct: 129 LEANERGHTAEDVFNASRLIRQY--GFELGLQMMIGLYKSTGDDEYETMEKILEIHPDTV 186

Query: 363 FSFKYSPRLGTPGSNMLE 380
             +      GT  + +L+
Sbjct: 187 RIYPVVILRGTRLAELLK 204


>gi|291296153|ref|YP_003507551.1| lipoic acid synthetase [Meiothermus ruber DSM 1279]
 gi|290471112|gb|ADD28531.1| lipoic acid synthetase [Meiothermus ruber DSM 1279]
          Length = 324

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 31/182 (17%), Positives = 68/182 (37%), Gaps = 9/182 (4%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V             + +  A+ + + G+  + L   +    R    DG   
Sbjct: 95  CTRACKFCAVDTGNPRGW-VDPLEPLHVAQAVAEMGLKYVVLTSVD----RDDLPDGGAA 149

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
            F++++  +  +   V++   T    D    L      L          +++      + 
Sbjct: 150 HFAEVVRQIKRLDPSVKVETLTP---DFQGNLADVETVLQGGQDVFANNLETVRRLTPRV 206

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
            + R    +  ++++  + VRP++   S  ++G  GETD++ R  M  +  +G       
Sbjct: 207 RDPRAGYDQTLRVLEHAKKVRPEVLTKSSLMLGL-GETDEEIRQAMRDLRAVGVDIVTFG 265

Query: 366 KY 367
           +Y
Sbjct: 266 QY 267


>gi|254432424|ref|ZP_05046127.1| elongator protein 3/MiaB/NifB [Cyanobium sp. PCC 7001]
 gi|197626877|gb|EDY39436.1| elongator protein 3/MiaB/NifB [Cyanobium sp. PCC 7001]
          Length = 531

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 47/273 (17%), Positives = 87/273 (31%), Gaps = 39/273 (14%)

Query: 79  KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVV-VGPQTY---- 133
           +++  L  +R       +   +   V+ G       E++ RR P   VV VG        
Sbjct: 127 ELWRNLRLVRQGVRRARRHHPEARAVIGGGAVSVFYEQLGRRLPRGTVVSVGEGEPLLEK 186

Query: 134 -----------------YRLPELLERARFG--KRVVDTDYSVEDKFERLSIVDGGYNRKR 174
                               P L+     G  K   + DY  E   +    +DGG     
Sbjct: 187 LIRGESIEAERCFLAGDTPRPGLIHEQPGGMEKTACNYDYIAEIWPQLDWYLDGG----- 241

Query: 175 GVTAFLTIQEGCDKFCTFCVVPYTRGIEISR-SLSQVVDEARKLIDNGVCEITLLGQNVN 233
                +  + GC   C +CV     G  +    + +V+ E R+L   GV           
Sbjct: 242 DFYVGVQTKRGCPHNCCYCVYTVVEGKAVRVNPVQEVIAEMRQLYARGVRGFWFTDAQFI 301

Query: 234 AWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY-TTSHPRDMSDCLIKAHGDLDVLMPYLH 292
             R    D +     +LL ++ + +G   +R+       ++   L +        M Y  
Sbjct: 302 PARRYIEDAK-----ELLRAI-QAEGWTDIRWAAYIRADNLDAELAELMVATG--MSYFE 353

Query: 293 LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
           + + SGS  +++ M   +      +    +   
Sbjct: 354 IGITSGSQELVRKMRMGYNLRTVLENCRLLARA 386


>gi|78214170|ref|YP_382949.1| Elongator protein 3/MiaB/NifB [Synechococcus sp. CC9605]
 gi|78198629|gb|ABB36394.1| Elongator protein 3/MiaB/NifB [Synechococcus sp. CC9605]
          Length = 528

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 51/261 (19%), Positives = 98/261 (37%), Gaps = 27/261 (10%)

Query: 174 RGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVN 233
                 + +   C + C FC+  Y      + SL   +  A +        + LLG +V 
Sbjct: 196 WPDIHMVEVARSCPELCRFCLASYLTLPFRTPSLDDGLIPAVEKGLKATKRLGLLGASVT 255

Query: 234 AWRGKGLDGEKCTFSDLLYSLSEIKGL-VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLH 292
                        F+DLL  L + +    R+  ++     ++  L +           L 
Sbjct: 256 QH---------PQFTDLLNWLDQDRFDGTRVSVSSVRAATVTPDLGRILAK--RGSRSLT 304

Query: 293 LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS-VRPDIAISSDFIVGFPGETDDDFRATM 351
           + ++SGS+R+ + +N++ T     +     +      + +    +VG P E+DDD  AT 
Sbjct: 305 IAIESGSERMREVVNKKLTTEAIHEAACHAKQGGLKGLKLYG--MVGLPTESDDDVEATA 362

Query: 352 DLVDK-------IGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVS 404
           DL+         + +       + P+  TP         E  K  RL  L K+L+ + + 
Sbjct: 363 DLLLALKKGTAGLRFT-LGVSTFVPKAQTP-FQWEGVRPEAEK--RLKRLAKRLKPKGIE 418

Query: 405 FNDACVG-QIIEVLIEKHGKE 424
           F     G  +I+ L+ +  + 
Sbjct: 419 FRPESYGWSVIQALLSRSDRR 439


>gi|293609666|ref|ZP_06691968.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292828118|gb|EFF86481.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 337

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 64/208 (30%), Gaps = 12/208 (5%)

Query: 161 ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN 220
           E  +  +       G   F+ + + C + C FC V    G   +    +    A  + + 
Sbjct: 66  EEAACPNLPECFGGGTATFMIMGDICTRRCPFCDV--AHGRPNALDADEPRHMAETIANL 123

Query: 221 GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKA 280
            +    +   +    R   LDG    F D +     +     L       R   D  ++ 
Sbjct: 124 KLKYAVITSVD----RDDLLDGGAQHFVDCIKEARALSPNTLLEILVPDFRGRMDIALRI 179

Query: 281 HGDLDVLMPYLHLPVQSGSDRIL-KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGF 339
             +     P         +   L K+M           ++   +   PDI      +VG 
Sbjct: 180 MTE----CPPDVFNHNIETVPRLYKAMRPGSDYQHSLNLLKMFKEYCPDIPTKCGLMVGI 235

Query: 340 PGETDDDFRATMDLVDKIGYAQAFSFKY 367
            GET+++  A +D +           +Y
Sbjct: 236 -GETEEEVIALLDDLRAHDVDYVTIGQY 262


>gi|326201902|ref|ZP_08191772.1| Coproporphyrinogen dehydrogenase [Clostridium papyrosolvens DSM
           2782]
 gi|325987697|gb|EGD48523.1| Coproporphyrinogen dehydrogenase [Clostridium papyrosolvens DSM
           2782]
          Length = 497

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 37/232 (15%), Positives = 80/232 (34%), Gaps = 31/232 (13%)

Query: 170 YNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLG 229
            +R+  ++ ++ I   C   C +C          S ++SQ        +D  + EI    
Sbjct: 166 ESRENSISLYVGIPF-CPTRCLYCSFS-------SSTISQYKKMVGVYVDTLLKEIRHTA 217

Query: 230 QNVN-------AWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD------MSDC 276
           Q +        +    G          L   LS I+  + + Y   +  +      ++  
Sbjct: 218 QLMREKGLVVESIYIGGGTPTSLNERQLSRLLSGIEECIDMTYLREYTLEAGRPDTITIE 277

Query: 277 LIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFI 336
            +K   +    +  + +  Q+ +++ L+ + R HT  +        R +  D  I+ D I
Sbjct: 278 KLKVIKNSR--VSRISINPQTMNEKTLERIGRFHTPEDVVNAFKASRDMGFD-NINMDLI 334

Query: 337 VGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
            G PGE  + F  T+  + ++               T       Q+ + ++ 
Sbjct: 335 CGLPGEDVEMFGETLRKIKELNPDSLTVH-------TMAIKRASQLTKEIEK 379


>gi|325122886|gb|ADY82409.1| lipoyl synthase [Acinetobacter calcoaceticus PHEA-2]
          Length = 342

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 64/208 (30%), Gaps = 12/208 (5%)

Query: 161 ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN 220
           E  +  +       G   F+ + + C + C FC V    G   +    +    A  + + 
Sbjct: 71  EEAACPNLPECFGGGTATFMIMGDICTRRCPFCDV--AHGRPNALDADEPRHMAETIANL 128

Query: 221 GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKA 280
            +    +   +    R   LDG    F D +     +     L       R   D  ++ 
Sbjct: 129 KLKYAVITSVD----RDDLLDGGAQHFVDCIKEARALSPNTLLEILVPDFRGRMDIALRI 184

Query: 281 HGDLDVLMPYLHLPVQSGSDRIL-KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGF 339
             +     P         +   L K+M           ++   +   PDI      +VG 
Sbjct: 185 MTE----CPPDVFNHNIETVPRLYKAMRPGSDYQHSLNLLKMFKEYCPDIPTKCGLMVGI 240

Query: 340 PGETDDDFRATMDLVDKIGYAQAFSFKY 367
            GET+++  A +D +           +Y
Sbjct: 241 -GETEEEVIALLDDLRAHDVDYVTIGQY 267


>gi|299137313|ref|ZP_07030495.1| Radical SAM domain protein [Acidobacterium sp. MP5ACTX8]
 gi|298600718|gb|EFI56874.1| Radical SAM domain protein [Acidobacterium sp. MP5ACTX8]
          Length = 485

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 53/301 (17%), Positives = 103/301 (34%), Gaps = 32/301 (10%)

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
                 R  + + +       V + G    A  EE    +    + +GP      P  L+
Sbjct: 76  YITNAYRAYRTADLYRSRGAFVCLGGLHVTALPEEAAVHADC--IFLGPGEQT-FPFFLK 132

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAF--LTIQEGCDKFCTFCV----V 195
             R G+       +     +R+  +     R+        + +  GC + C FC      
Sbjct: 133 DFRAGRPERIYTSTTGRTLDRVPPIRRDLIRRASYLVPNSIVVTRGCPQHCDFCYKDAFF 192

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
              +G    R +   + E  +L       +  L  ++   R                +L 
Sbjct: 193 QGGKGFYTQR-VDDALAEIARLPG---RHLYFLDDHLLGDR------------RFSEALF 236

Query: 256 EIKGLVRLRYTTSHPRD--MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT-A 312
           E    +R  +  +   D  +   LI+   +    +  L +  ++ +   L+  N+R    
Sbjct: 237 EGMKGMRRLFQGAATVDSILRGNLIEHAAEAG--LRSLFVGFETLTPDNLRRSNKRQNLG 294

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
            +Y+ + DR+ S+   I I+  F+ G   + +D FR T+D   + G   A     +P  G
Sbjct: 295 RDYKAVADRLHSL--GIMINGSFVFGMDDDGEDVFRRTVDWAVERGITTATFHIQTPYPG 352

Query: 373 T 373
           T
Sbjct: 353 T 353


>gi|194365207|ref|YP_002027817.1| coproporphyrinogen III oxidase [Stenotrophomonas maltophilia
           R551-3]
 gi|194348011|gb|ACF51134.1| oxygen-independent coproporphyrinogen III oxidase [Stenotrophomonas
           maltophilia R551-3]
          Length = 469

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 57/273 (20%), Positives = 101/273 (36%), Gaps = 43/273 (15%)

Query: 186 CDKFCTFC----VVPYTRGIEISRSLSQVVDEARK---LIDNGVCEITLLGQNVNAWRGK 238
           C   C +C    V+   RG   S  +S+V+ EA       ++G   I L           
Sbjct: 71  CSSPCFYCGCNRVISRDRGRGHSY-VSRVLAEADLLAPQFEDGREVIQL----------- 118

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLR-YTTSHPRDMSDCLIKAHGDLDVL-------MPY 290
            L G    F D     + I+GL R   ++ S  RD S  L     D   +          
Sbjct: 119 HLGGGTPNFLDAEAMTTLIEGLRRRFDFSDSSQRDFSIELDPRFIDTPDVAMLARLGFNR 178

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI-AISSDFIVGFPGETDDDFRA 349
             L VQ    ++ +S+NR     +   I+   R     + +++ D I G PG++ + F  
Sbjct: 179 ASLGVQDFDPQVQESINRVQGVQQTLDILRACRDS--GMRSVNVDLIYGLPGQSLEGFGR 236

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV---KAERLLCLQKKLREQQVSFN 406
           T++LV  +   +   + Y+           +Q+DE+      ++L  L   +     +  
Sbjct: 237 TLELVLALRPDRLAVYGYAHLPHL--FRAQKQIDESRLPSPEDKLALLGLAVERLSAAGY 294

Query: 407 DACVGQIIEVLIEK---HGKEKGKL----VGRS 432
              +G     L E+     +  G+L    +G +
Sbjct: 295 Q-YIGMDHFALPEEDLSRAQRAGQLHRNFMGYT 326


>gi|160946316|ref|ZP_02093525.1| hypothetical protein PEPMIC_00276 [Parvimonas micra ATCC 33270]
 gi|158447432|gb|EDP24427.1| hypothetical protein PEPMIC_00276 [Parvimonas micra ATCC 33270]
          Length = 379

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 48/244 (19%), Positives = 90/244 (36%), Gaps = 28/244 (11%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           CD+ C +C     +G   S+    V    +++   G     +    +       +DG   
Sbjct: 13  CDRICNYCDFTAFQGAN-SKIKEYVEALKKEIELKGNKNFLIDSIFIGGGTPSFIDG--- 68

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY-------LHLPVQSG 298
                   + EI   V+  +T     ++S        D   L  Y       + + VQS 
Sbjct: 69  ------KYIFEILEKVKENFTVLDNIEISIETNPKTFDKRKLEYYKSAKINRVSIGVQSF 122

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           +D ILK + R H + E    I+ ++    D  I+ D I G+  +T +D    +++V  I 
Sbjct: 123 NDVILKELGRNHNSKEAFDSIELVKKF--DFDINLDLIFGYQSQTIEDILYDLEMVKNIN 180

Query: 359 YAQAFSFKYSPRLGTPGSNM-----LEQVDENVKAERLLCLQKKLREQQVSFND----AC 409
                 +       T    +     L+ +DE  + +    + +KL E  ++  +    A 
Sbjct: 181 PEHISYYALIIEEKTKFKALQNAGKLDFLDEETERKMYHLIVEKLEEMGMNQYEVSNFAK 240

Query: 410 VGQI 413
           VG+ 
Sbjct: 241 VGKE 244


>gi|86261645|emb|CAI47658.1| putative Fe-S oxidoreductase 4 [Streptoalloteichus hindustanus]
          Length = 456

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 33/195 (16%), Positives = 72/195 (36%), Gaps = 18/195 (9%)

Query: 185 GCDKFCT-FCVVPYTRGI-EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG 242
           GC   C  +C  P + G    +  + ++V E R+  + G+          +  R + +  
Sbjct: 204 GCPYPCRFYCPYPLSEGRKIRTYPVERIVAEFRQCAELGITAAVFRDPVFSFHRDRTI-- 261

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
                 ++  ++ E  G     +  +    + + ++ A   +      + + V+SG   +
Sbjct: 262 ------EMCRAI-EAAGTGVPWWCETRIDRLDEEVVAAL--VAAGCVGVEVGVESGDPEM 312

Query: 303 LK-SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
              ++ +R      R+     R     + +   F++G P ET    R T D + ++G A 
Sbjct: 313 QATAVRKRLDLDTVRRFHAVARKA--GLKLVFLFLIGLPRETRMSIRRTFDFILELGLAH 370

Query: 362 A--FSFKYSPRLGTP 374
                   +P  GT 
Sbjct: 371 TEFNLSVITPYPGTE 385


>gi|298507090|gb|ADI85813.1| radical SAM domain iron-sulfur cluster-binding oxidoreductase
           [Geobacter sulfurreducens KN400]
          Length = 557

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 40/180 (22%), Positives = 67/180 (37%), Gaps = 17/180 (9%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
           + +  GC + C FC   +       RSL ++  +A + +      I L+G  V+  R  G
Sbjct: 250 MEVSRGCPRGCRFCAAGFIYLPYRQRSLDELKRQAVEGLGRRGK-IGLVGAAVSDHRDIG 308

Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
                    +L   + E  G V +        D    +I+           + L  + GS
Sbjct: 309 ---------ELCRFILEQGGKVSVSSLRIDRLDDG--MIEVLKASGH--KTVALAPEGGS 355

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDI-AISSDFIVGFPGETDDDFRATMDLVDKIG 358
            R+   + +  T  +     D +  +  DI  +   FI+G P ET DD      LV K+ 
Sbjct: 356 QRMRDLVRKNLTEEQILAACDLL--IGHDILNLKLYFIIGLPTETMDDLEEMGALVGKVR 413


>gi|253582900|ref|ZP_04860118.1| radical SAM domain-containing protein [Fusobacterium varium ATCC
           27725]
 gi|251835106|gb|EES63649.1| radical SAM domain-containing protein [Fusobacterium varium ATCC
           27725]
          Length = 586

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 45/279 (16%), Positives = 83/279 (29%), Gaps = 35/279 (12%)

Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
           P L +  +  KR +  D +  + ++   +        R   A + IQ GC + C FC   
Sbjct: 199 PSLHKGKKRIKRAIVEDLNKTEFYDNQLVPYINIVHDR---ASVEIQRGCTRGCRFCQAG 255

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256
                   RS     +   K+I            N               +S +   +  
Sbjct: 256 IVYRPIRERSFKNNCELIEKMIK-----------NTGYSEISLSSLSSSDYSKIDDLIKG 304

Query: 257 IKGLVRLR-----YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
           +K     R       +      S  +                  ++GS R+   +N+   
Sbjct: 305 LKNRYENRNLGISLPSLRMNPYSVQVADDISGGKR--TGFTFAPEAGSQRLRDIINKGVE 362

Query: 312 AYEYRQIIDR-IRSVRPDIAISSDFIVGFPGETDDD----FRATMDLVDKIGYAQ----- 361
             +     +  IR    ++     F++G P ETD+D    F     ++ +          
Sbjct: 363 EEDVLTTAEAAIRGGWENLKFY--FMIGLPFETDEDVAEIFELASKVIKRCRPISKRINV 420

Query: 362 -AFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLR 399
                 + P+  TP     EQ+D      +   L+   R
Sbjct: 421 TVSVSNFVPKPHTP-FQWAEQMDIEEMKRKHKILKDLFR 458


>gi|88809167|ref|ZP_01124676.1| hypothetical protein WH7805_05726 [Synechococcus sp. WH 7805]
 gi|88787109|gb|EAR18267.1| hypothetical protein WH7805_05726 [Synechococcus sp. WH 7805]
          Length = 432

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 37/207 (17%), Positives = 72/207 (34%), Gaps = 13/207 (6%)

Query: 186 CDKFCTFC---VVPY-----TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG 237
           C + C +C   VVP       +    S ++   ++   K I +      L    +     
Sbjct: 16  CHRRCFYCDFAVVPLGDRVNAQNGPGSLTIKAYLELILKEIRSSPPGPPLATIYIGGGTP 75

Query: 238 KGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQS 297
             L  ++     LL +L++  G+ R    T      S  L +    +   +  + L  QS
Sbjct: 76  SLLTPDQVRC--LLDALADRFGVQRGAEITLEMDPASFSLEELRALVRHGVNRVSLGGQS 133

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS---DFIVGFPGETDDDFRATMDLV 354
             D +L  + RRH   +  +    ++    D  + S   D I   P + D+ +   +   
Sbjct: 134 FDDVVLAGLGRRHRRKDVLEACHWMQRFLQDGRLRSWSLDLIRNLPNQDDEAWADVLTQA 193

Query: 355 DKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
            ++       +  S   GT  +   +Q
Sbjct: 194 VELQPPHLSIYDLSVEPGTVFARREQQ 220


>gi|167037695|ref|YP_001665273.1| radical SAM domain-containing protein [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|320116110|ref|YP_004186269.1| Radical SAM domain-containing protein [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
 gi|166856529|gb|ABY94937.1| Radical SAM domain protein [Thermoanaerobacter pseudethanolicus
           ATCC 33223]
 gi|319929201|gb|ADV79886.1| Radical SAM domain protein [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
          Length = 354

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 31/200 (15%), Positives = 71/200 (35%), Gaps = 11/200 (5%)

Query: 185 GCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK 244
           GC   C FC      G +         +  R+ I+  +  +    +   ++ G    G  
Sbjct: 16  GCPFKCVFCNQNSITGQQQ----EITEEYVRQTIETHLKTLPSNAEIEVSFFGGSFTGIP 71

Query: 245 CTFSDLLYSLSEI---KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
               +L   +++    KG +     ++ P  +   +++        +  + L VQS  + 
Sbjct: 72  QDKQNLYLGIAKEYLDKGKIDAIRLSTRPDYIDTEILQNLKRYK--VSIIELGVQSMDEE 129

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
           +L    R HT+ +  + ++ IR    D  +    ++G PG+  +    T   + ++    
Sbjct: 130 VLLKSRRGHTSEDVVKAVNLIRQY--DFKLGLQIMIGLPGDNLEKSLNTAYKIVELKPDF 187

Query: 362 AFSFKYSPRLGTPGSNMLEQ 381
              +       T    M ++
Sbjct: 188 VRIYPALVIKNTYLERMYKE 207


>gi|293374331|ref|ZP_06620658.1| radical SAM protein, TIGR01212 family [Turicibacter sanguinis
           PC909]
 gi|325841263|ref|ZP_08167364.1| radical SAM protein, TIGR01212 family [Turicibacter sp. HGF1]
 gi|292646994|gb|EFF64977.1| radical SAM protein, TIGR01212 family [Turicibacter sanguinis
           PC909]
 gi|325489944|gb|EGC92291.1| radical SAM protein, TIGR01212 family [Turicibacter sp. HGF1]
          Length = 317

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 37/203 (18%), Positives = 73/203 (35%), Gaps = 20/203 (9%)

Query: 188 KFCTFCVVPYTRGIEISRSLSQVV---DEARKLIDNGVCEITLLG-----QNVNAWRGKG 239
             CTFC      G    +    +    +  R+++     E   +       N +A     
Sbjct: 50  GGCTFCSTK-GSGDFAGKPEDDLKTQFNSVREMMHQKWPEAGYIAYFQAFTNTHAPVEV- 107

Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLD-VLMPYLHLPVQSG 298
                        ++ E    +      + P  + D +++  G+L+  +  ++ L +Q+ 
Sbjct: 108 -------LKRKYEAVLECDPNIVGLSIGTRPDCLPDDVVEYLGELNQRVNLWVELGLQTM 160

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
            D+  K +NR H      + ++++R    +I +    I G PGET +    T   V K+ 
Sbjct: 161 HDQTGKLINRGHDFKTLVEGVEKLRK--HNIDVIIHIINGLPGETREMMLETAKAVAKLD 218

Query: 359 YAQAFSFKYSPRLGTPGSNMLEQ 381
                        GTP   ML++
Sbjct: 219 VQGIKIHLLHVIDGTPMHKMLDK 241


>gi|297545075|ref|YP_003677377.1| Radical SAM domain-containing protein [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
 gi|296842850|gb|ADH61366.1| Radical SAM domain protein [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
          Length = 349

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 28/205 (13%), Positives = 67/205 (32%), Gaps = 24/205 (11%)

Query: 175 GVTAFLTIQEGCDKFCTFCVVPYTRGIEI-----SRSLSQVVDEARKLIDNGVCEITLLG 229
            +   +     C+  C +C     RG             +++  A+     G+  I L  
Sbjct: 54  HLRGLIEFSNYCNNTCFYC---GLRGPNRTIKRYRMEPEEIIQCAKYGAAAGLKTIVLQS 110

Query: 230 QNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMP 289
                  G+    +  T   ++  + ++   + L       +D    L KA  D      
Sbjct: 111 -------GEDKYFKINTLCKIIEEIKKLDMAITLSIGELTTKDY-AELKKAGADR----- 157

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
              L +++ +  + + ++   +     + +  ++ +     + +  +VG PG+T +    
Sbjct: 158 -YLLRIETTNKELYQKLHPGMSYENRVRCLMDLKEL--GYEVGTGSLVGLPGQTLEMLAD 214

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTP 374
            +    KI         + P   TP
Sbjct: 215 DLIFFKKIDADMLGIGPFIPCENTP 239


>gi|253682679|ref|ZP_04863476.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Clostridium botulinum D str. 1873]
 gi|253562391|gb|EES91843.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Clostridium botulinum D str. 1873]
          Length = 375

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 43/214 (20%), Positives = 90/214 (42%), Gaps = 19/214 (8%)

Query: 186 CDKFCTFCVVPYTRGIE-----ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL 240
           C + C +C      G E      S++LS  +D  +   D  V  I + G        +G 
Sbjct: 14  CKQKCLYCDFTSYCGKESQMLSYSKALSTEIDNIK---DKKVKTIFIGGGTPTYLSLEGW 70

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTT-SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
           +        L  S+ +++    L +T  S+P+      ++    +   +  + + +Q+  
Sbjct: 71  N-------ILKKSIDKLQKSEDLEFTVESNPKTFDKEKLEILKSMG--VNRISIGLQAWQ 121

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
           ++ LK++ R HT  E+ +  +  R V  +  I+ D + G P ++ D+++ T++ + K+  
Sbjct: 122 NKHLKALGRIHTREEFLKSYNMAREVGFE-NINVDLMFGIPNQSFDEWKETLNEIIKLNP 180

Query: 360 AQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLC 393
                +       TP  N+ E    N+ +E L  
Sbjct: 181 EHLSCYSLIIEEDTPFYNLYENQKINLPSEELER 214


>gi|326381607|ref|ZP_08203301.1| coproporphyrinogen III oxidase [Gordonia neofelifaecis NRRL
           B-59395]
 gi|326199854|gb|EGD57034.1| coproporphyrinogen III oxidase [Gordonia neofelifaecis NRRL
           B-59395]
          Length = 407

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 49/234 (20%), Positives = 82/234 (35%), Gaps = 16/234 (6%)

Query: 186 CDKFCTFCVV-PYTRGIEISRS-LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
           C   C +C    YT G   S S     ++  R  +D     +   G+ V+     G    
Sbjct: 36  CATRCGYCDFNTYTAGELGSSSSPQSWMEGVRAELDQAAALLA-RGREVSTVFVGGGTPS 94

Query: 244 KCTFSDLLYSLSEIKGLVRL-----RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
                 L   L  ++    L       T S+P   S     A  D       + L +QS 
Sbjct: 95  LLGGQGLARLLDAVRDSFDLAPGAEVTTESNPESTSPEFFGALRDAG--FTRISLGMQSA 152

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           +  +L  + R HT            +   +  ++ D I G PGE D D R T+D V  + 
Sbjct: 153 APHVLAVLERTHTPGRALDAAREASAAGFE-HVNLDMIYGTPGERDTDLRETLDAVLSVP 211

Query: 359 YAQAFSFKYSPRLGTPGSN--MLEQVD---ENVKAERLLCLQKKLREQQVSFND 407
                ++      GT  +      +V    ++V A R   +  +L E  +++ +
Sbjct: 212 VDHVSAYALIVEDGTRFARKVRRGEVPMPDDDVLAARYEMIDARLSEAGMTWYE 265


>gi|325290215|ref|YP_004266396.1| Coproporphyrinogen dehydrogenase [Syntrophobotulus glycolicus DSM
           8271]
 gi|324965616|gb|ADY56395.1| Coproporphyrinogen dehydrogenase [Syntrophobotulus glycolicus DSM
           8271]
          Length = 518

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 85/225 (37%), Gaps = 11/225 (4%)

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
           R++ T +SV++ F+          ++R V+ ++++   C   C++C   +        ++
Sbjct: 169 RLLQTVFSVQEPFQ-----PQTKKQQRFVSLYISVPF-CPSRCSYCSFAFAESTGQDSTI 222

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWR---GKGLDGEKCTFSDLLYSL-SEIKGLVRL 263
           S  +    + I+     +T     VN      G     +      LL  + +EI     +
Sbjct: 223 SGYLSALVREIELAGGLLTRTSFLVNHLYIGGGTPTVLDSARLEILLKKIKAEIPLADDV 282

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
            YT    R  +    K        +  L +  QS +D  L+++ RRHT  +        R
Sbjct: 283 EYTVEAGRPDTMNQEKLLCLKRYGVNRLSINPQSMNDGTLRAIGRRHTVQDILDCYALAR 342

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
               D  I+ D I+G PGE  ++   T+  V  +          S
Sbjct: 343 E-IGDWIINMDIILGLPGEGPEEVEQTVRAVLSLKPDNLAVHAMS 386


>gi|311694651|gb|ADP97524.1| oxygen-independent coproporphyrinogen III oxidase, Fe-S
           oxidoreductase [marine bacterium HP15]
          Length = 298

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 74/224 (33%), Gaps = 32/224 (14%)

Query: 160 FERLSIVDGGYNRKRGVTAFLTIQEGCD-KFCTFCVV-PYTRGIEISRSLSQVVDEARKL 217
           F    +           +  L +  GC    CTFC +    +    +R    V+ + R  
Sbjct: 4   FPIDYVEPVFRPPSEAKSLILPVTNGCSWNKCTFCEMYTQPQKKFRARKPEDVLQDIRNA 63

Query: 218 IDN--GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSD 275
             +  GV  + L             DG+          L EI G +R  +     R  S 
Sbjct: 64  ARSLGGVRRVFL------------ADGD--AMVLPTRRLLEILGQLREAFPDL-QRVSSY 108

Query: 276 CLIKAHGDL---------DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
           CL +              D  +  L++ ++SG D IL+ +N+  T    R  + +IR   
Sbjct: 109 CLPRNLAKKTVEELAQLKDAGLEILYVGMESGDDEILRRVNKGETWESTRSALLKIREA- 167

Query: 327 PDIAISSDFIVGFPGE--TDDDFRATMDLVDKIGYAQAFSFKYS 368
             +  S   + G  GE  +      T  L ++       +   S
Sbjct: 168 -GLTSSVMVLNGLGGENLSRQHAINTATLCNETQPDYLSTLVVS 210


>gi|300309644|ref|YP_003773736.1| Fe-S oxidoreductase [Herbaspirillum seropedicae SmR1]
 gi|300072429|gb|ADJ61828.1| Fe-S oxidoreductase protein [Herbaspirillum seropedicae SmR1]
          Length = 508

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 85/230 (36%), Gaps = 25/230 (10%)

Query: 158 DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG--------IEISR---- 205
           D +          + KR   A +    GC   C FC++                SR    
Sbjct: 204 DLYRAHFWHAEFSHEKRTPFAAIYTSLGCSFGCDFCMINIVNRVDSSDGVSAAQSRGMRF 263

Query: 206 -SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
            S + V  + RKL D GV  + +  +             K     L  ++ E  G     
Sbjct: 264 WSPAWVARQMRKLADLGVRTLRISDE-------MFFLNRKYYTPILQQAIDEDFGF--NM 314

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +T S    +    ++        + +L L V++G+  + + +++        + + ++ +
Sbjct: 315 WTYSRVDTVRRDALELFKRAG--VNWLALGVEAGNQMVRQEVSKGSFKEVNIRDVCKVIN 372

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
              DI I S++I GFP +T +  + T+DL  ++    A  +      G+P
Sbjct: 373 -DADINIISNYIFGFPDDTRETMQETLDLALELNTEMANMYPCQALPGSP 421


>gi|254414422|ref|ZP_05028188.1| radical SAM domain protein [Microcoleus chthonoplastes PCC 7420]
 gi|196178652|gb|EDX73650.1| radical SAM domain protein [Microcoleus chthonoplastes PCC 7420]
          Length = 459

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 44/240 (18%), Positives = 90/240 (37%), Gaps = 17/240 (7%)

Query: 123 IVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDG-GYNRKRGVTAFLT 181
           + ++++G         +       ++    +       ER  + D   Y  K G    + 
Sbjct: 146 LADILLGQDIRGTASYVDGAILINQKAGIENLEALPFPERQLVKDQKYYYPKLGECTTIL 205

Query: 182 IQEGCDKFCTF-CVVPYTRGIE-ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
             +GC   C++ C  P  +G +  ++S+  V+ E +  I  G              R   
Sbjct: 206 SSKGCPYACSYYCPYPLVQGKQWRAKSVDYVIAEIKDAISLGYTRFLF--------RDPV 257

Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD-MSDCLIKAHGDLDVLMPYLHLPVQSG 298
              +K    ++ Y++S++   V++ +      D +S  L++           +++ V+SG
Sbjct: 258 FSLDKNRALEIAYAISKLA--VKIEWWCETRADRLSRDLLQIMALSG--CKGVNIGVESG 313

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
              +  +  +R         I +       IAI+   +VGFPGET     AT +L+    
Sbjct: 314 DPELRFTKLKRGVTDAVLLNISQWSKEF-TIAIAFLLMVGFPGETRMSIVATANLISLCR 372


>gi|149702809|ref|XP_001498146.1| PREDICTED: lipoic acid synthetase isoform 1 [Equus caballus]
          Length = 372

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 36/186 (19%), Positives = 68/186 (36%), Gaps = 15/186 (8%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLS--QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
           C + C FC V   R       +   +  + A+ + + G+  + L   +    R    DG 
Sbjct: 137 CTRGCRFCSVKTARNP---PPVDANEPYNTAKAIAEWGLDYVVLTSVD----RDDMPDGG 189

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPR-DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
              F+  +  L E    + +   T   R D+      A   LDV    +    +      
Sbjct: 190 AEHFAKTVSYLKERNPEILVECLTPDFRGDLKAIEKVALSGLDVYAHNVETVPE----LQ 245

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
            K  + R    +  +++   + VRPD+   +  ++G  GE+D+   ATM  + +      
Sbjct: 246 RKVRDPRANFDQSLRVLKHAKEVRPDVISKTSIMLGL-GESDEQVYATMKALREADVDCL 304

Query: 363 FSFKYS 368
              +Y 
Sbjct: 305 TLGQYM 310


>gi|289642697|ref|ZP_06474837.1| oxygen-independent coproporphyrinogen III oxidase [Frankia symbiont
           of Datisca glomerata]
 gi|289507527|gb|EFD28486.1| oxygen-independent coproporphyrinogen III oxidase [Frankia symbiont
           of Datisca glomerata]
          Length = 475

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 45/234 (19%), Positives = 85/234 (36%), Gaps = 15/234 (6%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C   C +C        E+      +      L        ++LG    A     + G   
Sbjct: 107 CATHCGYCDFNTYTATEL-GPGVAIGTFVETLAAEFRLARSVLGPADVAVSTVFVGGGTP 165

Query: 246 TFS---DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL----MPYLHLPVQSG 298
           T     DL   L  I     L        + +   + A G L+ L       +   +QS 
Sbjct: 166 TLLPAEDLERLLRMIDAEFGLAAGAEVTTEANPESVDA-GALERLAAAGYTRISFGMQSA 224

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
              +L +++RRHT      ++   R       I+ D I G PGE+  D++A++D V  + 
Sbjct: 225 RPHVLAALDRRHTPGRVPDVVSWARKA-GFAHINLDLIYGTPGESARDWQASLDAVVALD 283

Query: 359 YAQAFSFKYSPRLGTPGSNMLEQ-----VDENVKAERLLCLQKKLREQQVSFND 407
                ++  +   GT  +  + +      D+++ A+R    ++ L    +S+ +
Sbjct: 284 PDHVSAYALTVEDGTRLARRIRRGELLPPDDDLMADRYQQAEETLTAAGLSWYE 337


>gi|297618216|ref|YP_003703375.1| radical SAM protein [Syntrophothermus lipocalidus DSM 12680]
 gi|297146053|gb|ADI02810.1| Radical SAM domain protein [Syntrophothermus lipocalidus DSM 12680]
          Length = 291

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 32/199 (16%), Positives = 67/199 (33%), Gaps = 15/199 (7%)

Query: 185 GCDKF-CTFCVVPYTRGIEISRSLSQV---VDEARKLIDNGVCEITLLGQNVNAWRGKGL 240
           GC    CTFC + Y       R + ++   +  A+    + +  I     N    + K L
Sbjct: 24  GCPHNKCTFCSM-YKGTKFRIRPVEEIKADLRMAKIYYGDWIKSIFFPDGNTIIMKTKDL 82

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300
                        L     L R+    S        L       +  +  +H+ ++SG D
Sbjct: 83  ----VEIFSYARQL--FPFLERITVYGSARFVDKKSLEDLIALKEAGLSRIHMGMESGDD 136

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPG-ETDDDFR-ATMDLVDKIG 358
            +L  + +  T+ +      +++     + +S  ++VG  G E  +     +  ++++  
Sbjct: 137 TVLSRICKGTTSDQIISAGLKLKQA--GVELSEYYLVGIGGPELSEQHAINSARVLNQFI 194

Query: 359 YAQAFSFKYSPRLGTPGSN 377
                   Y P   +P   
Sbjct: 195 PDFIRFRTYQPVQNSPLYE 213


>gi|326330760|ref|ZP_08197062.1| radical SAM domain protein [Nocardioidaceae bacterium Broad-1]
 gi|325951443|gb|EGD43481.1| radical SAM domain protein [Nocardioidaceae bacterium Broad-1]
          Length = 656

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 61/351 (17%), Positives = 113/351 (32%), Gaps = 50/351 (14%)

Query: 135 RLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCV 194
             P++  R R    ++D D     +   + + +  + R       + I  GC + C FC 
Sbjct: 240 NRPDIPWRVRK-HTLMDLDAWPYPRNPLVPLAETVHERFS-----VEIFRGCTRGCRFCQ 293

Query: 195 VPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS 253
                     RS++ + D     I   G  E+ LL     +       G+  T     Y 
Sbjct: 294 AGMITRPVRERSITTIGDMVENGIRKSGFEEVGLLS---LSSADHTEIGDVATGLADRYE 350

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
                  V L   ++     +  L             L    + GS+R+ K +N+  T  
Sbjct: 351 ----GTNVSLSLPSTRVDAFNITLANEFSRNGR-RSGLTFAPEGGSERMRKVINKMVTEE 405

Query: 314 EYRQIIDRIRSVRPDIA-ISSDFIVGFPGETDDDFRATMDLVDKI---------GYAQAF 363
           +  + +    +       +   F+ G P ETD+D     +L  K+               
Sbjct: 406 DLIRTVGA--AYSHGWRQVKLYFMCGLPTETDEDVLQIAELAKKVIAKGREVSGRNDIRC 463

Query: 364 SF---KYSPRLGTPGSNMLEQVDENVKAERLLCLQKKL-------REQQVSFNDACVG-- 411
           +     + P+  TP      Q+D     ERL  L+  +       R     ++D   G  
Sbjct: 464 TVSIGGFVPKPHTP-FQWASQLDHETTDERLQKLRDVVRSDKKFGRAIGFRYHDGKPGIV 522

Query: 412 --------QIIEVLIEKHGKEKGKLVGRSPW--LQSVVLNSKNHNIGDIIK 452
                   + +  +IE+  ++ G+  G S        V  ++    G  + 
Sbjct: 523 EGLLSRGDRRVGAIIEQVWRDGGRFDGWSEHFSYDRWVAAAETGLAGTGVD 573


>gi|149702812|ref|XP_001498164.1| PREDICTED: lipoic acid synthetase isoform 2 [Equus caballus]
          Length = 322

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 36/186 (19%), Positives = 68/186 (36%), Gaps = 15/186 (8%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLS--QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
           C + C FC V   R       +   +  + A+ + + G+  + L   +    R    DG 
Sbjct: 137 CTRGCRFCSVKTARNP---PPVDANEPYNTAKAIAEWGLDYVVLTSVD----RDDMPDGG 189

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPR-DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
              F+  +  L E    + +   T   R D+      A   LDV    +    +      
Sbjct: 190 AEHFAKTVSYLKERNPEILVECLTPDFRGDLKAIEKVALSGLDVYAHNVETVPE----LQ 245

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
            K  + R    +  +++   + VRPD+   +  ++G  GE+D+   ATM  + +      
Sbjct: 246 RKVRDPRANFDQSLRVLKHAKEVRPDVISKTSIMLGL-GESDEQVYATMKALREADVDCL 304

Query: 363 FSFKYS 368
              +Y 
Sbjct: 305 TLGQYM 310


>gi|332289412|ref|YP_004420264.1| lipoyl synthase [Gallibacterium anatis UMN179]
 gi|330432308|gb|AEC17367.1| lipoyl synthase [Gallibacterium anatis UMN179]
          Length = 320

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 27/183 (14%), Positives = 62/183 (33%), Gaps = 12/183 (6%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V    G  +     +    A+ + D G+  + +   +    R    DG   
Sbjct: 93  CTRRCPFCDV--AHGKPLPPDPEEPKKLAQTIHDMGLRYVVITSVD----RDDLRDGGAG 146

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL-K 304
            F++ +  +  +   +++       R   +  ++        +          +   L K
Sbjct: 147 HFAECVKEIRALNPNIKIEILVPDFRGRIEVALEKLAQNPPDV----FNHNLENIPRLYK 202

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
            +          +++   + + P+I   S  +VG  GET+++    M  +   G      
Sbjct: 203 EVRPGADYQWSLRLLREFKQMFPNIPTKSGLMVGL-GETNEEILQVMQDLRDNGVTMLTL 261

Query: 365 FKY 367
            +Y
Sbjct: 262 GQY 264


>gi|209527580|ref|ZP_03276081.1| Radical SAM domain protein [Arthrospira maxima CS-328]
 gi|209492003|gb|EDZ92357.1| Radical SAM domain protein [Arthrospira maxima CS-328]
          Length = 541

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 62/273 (22%), Positives = 106/273 (38%), Gaps = 31/273 (11%)

Query: 177 TAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR 236
              + +   C + C FC+  Y      + +L   +  A          + LLG +V    
Sbjct: 225 IYMVEVVRSCPEMCRFCLASYLTLPFRTANLESSLIPAINRGLTVTKRLGLLGASVTQH- 283

Query: 237 GKGLDGEKCTFSDLLYSLSEIK-GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPV 295
                     F++LL  LS+ +   VRL   +     ++  L       D     + + V
Sbjct: 284 --------PEFNELLDYLSQPEYDDVRLSLASVRTNTVTVKLAATLAKRDT--RSITIAV 333

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI-AISSDFIVGFPGETDDDFRATMDLV 354
           +SGSDR+ K +N++    E  Q    I +    + ++    +VG PGE  +D  AT+ ++
Sbjct: 334 ESGSDRLRKIINKKLDNDEIIQAA--INAKAGGLKSLKLYGMVGIPGEESEDLEATVAMM 391

Query: 355 DKIGYA------QAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFN-D 407
            +I  A            + P+  TP            K  RL  L+KKLR   + F  +
Sbjct: 392 QEIKKAAPGLRLTLGCSTFVPKAHTP-FQWFGVNPAAEK--RLKFLEKKLRSNGMDFRPE 448

Query: 408 ACVGQIIEVLIEKHGK------EKGKLVGRSPW 434
           +    +I+ LI +  +      EK +  G SP 
Sbjct: 449 SYRWSVIQALISRGDRRLSYLLEKVRHYGDSPG 481


>gi|86739923|ref|YP_480323.1| radical SAM family protein [Frankia sp. CcI3]
 gi|86566785|gb|ABD10594.1| Radical SAM [Frankia sp. CcI3]
          Length = 679

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 53/336 (15%), Positives = 107/336 (31%), Gaps = 47/336 (13%)

Query: 131 QTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190
           ++  R  + +        + D D     K   + + +  + R       + I  GC + C
Sbjct: 224 RSVTRNRDDVPARPSKHTLSDLDSWPYPKAPLVPLAETVHERMS-----VEIFRGCTRGC 278

Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFSD 249
            FC           R+++ +       +   G  E+ LL     +       GE  T   
Sbjct: 279 RFCQAGMITRPVRERNIATIGAMVDAGLRATGFSEVGLLS---LSSADHTEIGEIATGLA 335

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
             Y        V L   ++     +  L             L    + GS+R+ + +N+ 
Sbjct: 336 DRYE----GANVSLSLPSTRVDAFNVTLANEFSRNGR-RSGLTFAPEGGSERLRRVINKM 390

Query: 310 HTAYEYRQIIDRIRSVRPDIA-ISSDFIVGFPGETDDDFRATMDLVDKI-----GYA--- 360
            +A +  + +    +       +   F+ G P ETD+D     DL  ++       +   
Sbjct: 391 VSAEDLVRTVST--AYAHGWRQVKLYFMCGLPTETDEDVLEIADLAREVIRAGRRVSGQR 448

Query: 361 ----QAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCL-------QKKLREQQVSFNDAC 409
                     + P+  TP    + Q    V   RL  L       ++  R     ++D  
Sbjct: 449 DIRCTVSIGGFVPKPHTP-FQWVGQAPHEVTDARLKLLRDAVRADREVGRAIGFRYHDGR 507

Query: 410 VG----------QIIEVLIEKHGKEKGKLVGRSPWL 435
            G          + +  +IE+  ++ G+  G + + 
Sbjct: 508 PGIIEGLLARGDRRVAAVIERVWRDGGRFDGWNEYF 543


>gi|227503125|ref|ZP_03933174.1| coproporphyrinogen dehydrogenase [Corynebacterium accolens ATCC
           49725]
 gi|227076186|gb|EEI14149.1| coproporphyrinogen dehydrogenase [Corynebacterium accolens ATCC
           49725]
          Length = 379

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 49/233 (21%), Positives = 78/233 (33%), Gaps = 15/233 (6%)

Query: 186 CDKFCTFCVV-PYTRGIEISRSLSQV----VDEARKLIDNGVCEITLLGQNVNAWRGKGL 240
           C   C +C    YT G   S     +    +D   K ++     +      V    G   
Sbjct: 14  CATRCGYCDFNTYTPGELGS--PRDLTGPYLDALDKELEMAAGRVGRTADTVFIGGGTPS 71

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300
                  S +L ++    GL      T+     S          D     + L +QS S 
Sbjct: 72  LLGGQGLSRILDTVRSTFGLSPDAEVTTESNPESTSPEYFAALADAGFNRISLGMQSASH 131

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDI-AISSDFIVGFPGETDDDFRATMDLVDKIGY 359
            +L+ + R HT           R        ++ D I G P ETDD+ R T+D V + G 
Sbjct: 132 SVLQVLERAHTPGRAFDAAREAREA--GFQHVNLDMIYGTPTETDDNVRETLDRVLETGV 189

Query: 360 AQAFSFKYSPRLGTPGSN-----MLEQVDENVKAERLLCLQKKLREQQVSFND 407
               ++      GT  +      +L   DE+V A R   +   L +    + +
Sbjct: 190 DHVSAYSLIVEDGTRMARKVNKGLLPAPDEDVLARRYEMISSTLEDAGFEWYE 242


>gi|268592301|ref|ZP_06126522.1| oxygen-independent coproporphyrinogen III oxidase [Providencia
           rettgeri DSM 1131]
 gi|291312082|gb|EFE52535.1| oxygen-independent coproporphyrinogen III oxidase [Providencia
           rettgeri DSM 1131]
          Length = 457

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 44/263 (16%), Positives = 90/263 (34%), Gaps = 22/263 (8%)

Query: 158 DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKL 217
           D+   +       +R   +   +     C K C FC         ++R   +  +  + +
Sbjct: 37  DENAFVQATQRYPDRPLSLYVHIPF---CHKLCYFC----GCNKLVTRQKHKADEYLKVI 89

Query: 218 IDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCL 277
               +    LL   +      G  G   T+ D    +S + GL++  +  +   +MS  +
Sbjct: 90  EKEIIQRAALLKGRIVTQMHWG--GGTPTYLD-KAQVSHLVGLLKKHFHFADDVEMSIEV 146

Query: 278 IKAHGDLDVLMPYLH-------LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330
                +LD++    H       + VQ  +  +   +NR         +I R +       
Sbjct: 147 DPREIELDMIDHLRHEGFNRLSMGVQDFNKEVQVLVNREQDEEFIFALIKRAKET--GFT 204

Query: 331 ISS-DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQVDENVKA 388
            +S D I G P +T + F  T+  V ++   +   F Y+       +   ++  D     
Sbjct: 205 STSIDLIYGLPKQTPESFAFTLKKVAELSPDRLSVFNYAHLPNLFAAQRKIKDADLPSAE 264

Query: 389 ERLLCLQKKLREQQVSFNDACVG 411
           ++L  LQ  +           +G
Sbjct: 265 QKLDILQDTIATLTRDGYQ-FIG 286


>gi|224539087|ref|ZP_03679626.1| hypothetical protein BACCELL_03987 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224519291|gb|EEF88396.1| hypothetical protein BACCELL_03987 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 466

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 64/384 (16%), Positives = 122/384 (31%), Gaps = 62/384 (16%)

Query: 53  YERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQA 112
           Y R   +  A   + N         E++   L R++ L            +V+ G     
Sbjct: 53  YHRQPDILAATTWLFN--------HEQLLHILSRVKAL-------LPQCCIVLGGPEYLG 97

Query: 113 EGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR---------------VVDTDYSVE 157
           + E  L ++P V+ V   +     P+ L      ++                 D   +  
Sbjct: 98  DNEYFLHKNPYVSCVFRGEGEEVFPQWLACRNEQEKWNTIPGLCYLDSNGQYRDNGIARV 157

Query: 158 DKFERLSIVDGGYNRKRGVTAFLTI--QEGCDKFCTFCVVPYTRGIEISRSLSQVVDEAR 215
            KF  L I             F+ +    GC   C FC V        + S+  + +  +
Sbjct: 158 LKFSDL-IPPEKSRFFNWSKPFVQLETTRGCFNTCAFC-VSGGEKPVRTLSIEAIRERLQ 215

Query: 216 KLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSD 275
            +  +G+  + +L +  N               +LL    E    +R      HP  +S+
Sbjct: 216 IIHQHGIKNVRVLDRTFNY--------NTRRAKELLELFLEYHPDIRFHLE-IHPALLSE 266

Query: 276 CLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDF 335
            L +    L   + +L   +QS  + +L+   R     +  + +  + S+ P++   +D 
Sbjct: 267 ELKEELKHLPEGLLHLEAGIQSLREPVLEKSRRMGKLTDALEGLKFLCSL-PNMETHADL 325

Query: 336 IVGFP----GETDDDFRATMDL-VDKIGYAQAFSFKYSPRLGTPGSNMLEQV-------- 382
           I G P     E  +D R        +I              GT      E++        
Sbjct: 326 IAGLPLYHLAEIFEDIRVLAAYGAGEIQLESLKL-----LPGTEMRRRAEELGIQYSPLP 380

Query: 383 DENVKAERLLCLQKKLREQQVSFN 406
              V   R + + +    +Q+S  
Sbjct: 381 PYEVLQTREINVSELQTARQLSRL 404


>gi|170287850|ref|YP_001738088.1| radical SAM domain-containing protein [Thermotoga sp. RQ2]
 gi|170175353|gb|ACB08405.1| Radical SAM domain protein [Thermotoga sp. RQ2]
          Length = 447

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 46/251 (18%), Positives = 88/251 (35%), Gaps = 21/251 (8%)

Query: 126 VVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEG 185
           +V        LP  LE   F  + +  D+     FE    +   YNR   +    T+  G
Sbjct: 158 IVYEKGDLVFLPSFLESLGFPSKEIPADW-----FEVFDPMYELYNRVGYLVFITTL--G 210

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLID-NGVCEITLLGQNVNAWRGKGLDGEK 244
           C   C++C V         R+  +VV+   K ++   V ++      + A          
Sbjct: 211 CPFRCSYCAVHRLWNGLRVRTPERVVETIEKYLNIFKVEDVVFFDDAILAS--------- 261

Query: 245 CTFSDLLYSLSEIKGLVRLRYTT-SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
             F DLL  + E +  VR       H R + +       + +     + L  ++      
Sbjct: 262 GRFKDLLKLIVEKRWPVRFHLPNGIHARLLDEETAFLLKEAN--FRTIKLGYETSGRLQR 319

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           ++  + +     R      ++   +  +S+  +V  PG+T +D    + +    G     
Sbjct: 320 ETGGKVYDEDLVRAARILRKAGFTEKEVSAYIMVNMPGQTKEDVLNAVKVCLSEGIG-IS 378

Query: 364 SFKYSPRLGTP 374
             +Y+P  GT 
Sbjct: 379 INEYTPIPGTK 389


>gi|220928316|ref|YP_002505225.1| radical SAM protein [Clostridium cellulolyticum H10]
 gi|219998644|gb|ACL75245.1| Radical SAM domain protein [Clostridium cellulolyticum H10]
          Length = 443

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 36/206 (17%), Positives = 74/206 (35%), Gaps = 20/206 (9%)

Query: 186 CDKFCTFCV--VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
           C   C+FC+          + R L  +  E   + +    +      +          G 
Sbjct: 66  CASRCSFCLYYTKIYERELVDRYLDALEKEVEAISNTKYVK------STRFECVYFGGGT 119

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDC-------LIKAHGDLDVLMPYLHLPVQ 296
               ++    +  +  +V   +  +   ++S         L K           + L +Q
Sbjct: 120 PSLLNE--KQIDRVANIVFKNFQVTDELEISFEANPSSLSLDKVMALKRNNFNRISLGIQ 177

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
           S +D+ LK MN RH + E +++I+ +        ++ D I GF G+T+++ +  ++ +  
Sbjct: 178 SFNDKYLKQMNCRHNSKEAKEVINMLLEK--GFNVNIDLIYGFQGQTEEELQMDLEEILN 235

Query: 357 IG-YAQAFSFKYSPRLGTPGSNMLEQ 381
                    F       TP  N LE+
Sbjct: 236 FKNLHHISIFPLRLVTQTPLYNKLEK 261


>gi|297569909|ref|YP_003691253.1| oxygen-independent coproporphyrinogen III oxidase [Desulfurivibrio
           alkaliphilus AHT2]
 gi|296925824|gb|ADH86634.1| oxygen-independent coproporphyrinogen III oxidase [Desulfurivibrio
           alkaliphilus AHT2]
          Length = 379

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 37/203 (18%), Positives = 74/203 (36%), Gaps = 29/203 (14%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLS----QVVDEARKLID----NGVCEITL-LGQNVNAWR 236
           C   C++C           R  +     ++ +AR+L +          TL +G       
Sbjct: 14  CRSKCSYCAFSSWPCR---RPPAGYPAALLAQARQLAELPWSQEKKFATLFVGGGTPTIY 70

Query: 237 GKGLDGEKCTFSDLLYSLSEIKGLVRL-----RYTTSHPRDMSDCLIKAHGDLDVLMPYL 291
              +         L   L+ +  L RL         ++P  ++  L++           +
Sbjct: 71  PAPV---------LTDLLAGLGKLFRLDPEAEISLEANPDTLTPELLRQLRRGG--FNRI 119

Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351
            + VQS  D++L  + RRH   + RQ +   R       ++ D + G PG++   +RA +
Sbjct: 120 SIGVQSFHDQLLHRIGRRHDGAKARQAVAWARQA-GFANLNLDLMYGLPGQSRRQWRADI 178

Query: 352 DLVDKIGYAQAFSFKYSPRLGTP 374
               ++       ++ +P   TP
Sbjct: 179 ATALELQPEHLAIYQLTPEAETP 201


>gi|163782471|ref|ZP_02177468.1| hypothetical protein HG1285_16345 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882044|gb|EDP75551.1| hypothetical protein HG1285_16345 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 371

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 45/246 (18%), Positives = 84/246 (34%), Gaps = 39/246 (15%)

Query: 185 GCDKFCTFCVVPYTRGIEISR-----------SLSQVVDEARKLIDNGVCEITLLGQNVN 233
           GC   C +C +   R +E S+            L  +++  +++   G  E   + Q  +
Sbjct: 54  GCHATCAYCGLQKARDMEYSKKNFIRVEWPTVKLDDIIERTKEV---GHAERLCISQITH 110

Query: 234 AWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHL 293
               +           +L  + E  G         +    +   I+ +  L      L +
Sbjct: 111 PRSIRDTKY-------VLKRVIEELGDQLFVSILMNATGQTYEDIEDYKKLG--ADTLTV 161

Query: 294 PVQSGSDRILKS-----MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFR 348
            + + +  I        MN  H    Y ++++    V  D       IVG  GET+ +  
Sbjct: 162 ALDAATPEIFDKLRGRPMNSPHRWDTYWEVLEWCGEVMGDGYAGCHLIVGL-GETEQEMV 220

Query: 349 ATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD------ENVKAERLLCLQKKLREQQ 402
            T+  V  +G A+   F + P  G   S M ++          V+  R L      R + 
Sbjct: 221 ETIQRVRDLG-ARTHLFSFWPEEG---SLMEKEKPCPAPQYRRVQMARYLIDNGLSRYED 276

Query: 403 VSFNDA 408
           + FN+ 
Sbjct: 277 MKFNEK 282


>gi|169334997|ref|ZP_02862190.1| hypothetical protein ANASTE_01403 [Anaerofustis stercorihominis DSM
           17244]
 gi|169257735|gb|EDS71701.1| hypothetical protein ANASTE_01403 [Anaerofustis stercorihominis DSM
           17244]
          Length = 376

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 33/200 (16%), Positives = 70/200 (35%), Gaps = 18/200 (9%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEK 244
           C   C +C        E         D   +   +   EI L    +N+     +  G  
Sbjct: 13  CKHKCYYCDFASFANNE---------DLINEYYKSLKKEIILRKDEINSREISTVYFGGG 63

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY-------LHLPVQS 297
                    + +I  +++  +  +   +++          + L  Y       + + +QS
Sbjct: 64  TPSYVDSKYIVDIMDILKSEFNINKDAEITIEANPESITDEKLENYKIAGFNRISMGLQS 123

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
            ++  LK + R HT  ++    +  +S   D  I+ D +   P ET +DF  +++ V  I
Sbjct: 124 ANNDTLKKIGRIHTYEKFLSSYELCKSAGFD-NINVDLMFSLPNETLNDFIDSLEEVIMI 182

Query: 358 GYAQAFSFKYSPRLGTPGSN 377
             +   ++      GT   +
Sbjct: 183 SPSHISTYSLILEEGTKLYD 202


>gi|116624859|ref|YP_827015.1| radical SAM domain-containing protein [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116228021|gb|ABJ86730.1| Radical SAM domain protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 597

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 59/311 (18%), Positives = 112/311 (36%), Gaps = 42/311 (13%)

Query: 102 LVVVAGCVAQAEGEEILRRSPIVNVVV-GPQTYYRLPELLERARFGKRVVD-TDYSVEDK 159
            V+V G       +        V+ VV G        EL   A  G+++      S    
Sbjct: 155 KVIVGGSGGWQISQTDGFEDLSVDCVVEGRSESGDAIELFRMAIRGEQLPRFVQVSHPAT 214

Query: 160 FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLID 219
            E L   D     KR     + +  GC + C FC+ P     +I     +++D  R  + 
Sbjct: 215 REELLTPD-----KRTTFGVVEMTTGCGRRCNFCL-PDL-NPQIDFPKEKIIDAVRANVR 267

Query: 220 NGVCEITLLGQNVNAWRG-----KGLDGEKCTFSDLLYSLSEIKGLVR--LRYTTSHPRD 272
            G  +I+L  +++  W             +     L   + +  G+    L + T  P  
Sbjct: 268 EGNNQISLATEDMFIWGQVHTGVPFYFPNREALVALYRDVVDTPGVQYHLLSHCTMAPSV 327

Query: 273 MSDCLIKAHGD---------LDVLMPYLH-------LPVQSGSDRILKSM----NRRHTA 312
           +   LI+   D         L  +  +         + +++GS R+ K +          
Sbjct: 328 VDPKLIEQLSDVLLDKSPVKLPAVSTHPEGRILSPLIGMETGSVRMAKQIMPGKGVPFGI 387

Query: 313 YEYRQIIDRIRSV--RPDIAISSDFIVGFPGETDDDFRATMDLVDKIG----YAQAFSFK 366
            ++  ++    ++  R +       +VG PGETD+D +AT+DL+ ++     +A      
Sbjct: 388 EDWPSVLLHGLTIFNRNNWFPVITLMVGNPGETDEDCKATLDLLYEMERRGLFAFFVPSI 447

Query: 367 YSPRLGTPGSN 377
           ++P   T  + 
Sbjct: 448 FTPLHDTRFAA 458


>gi|310640869|ref|YP_003945627.1| arsenate reductase and like protein [Paenibacillus polymyxa SC2]
 gi|309245819|gb|ADO55386.1| Arsenate reductase and like protein [Paenibacillus polymyxa SC2]
          Length = 618

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 50/308 (16%), Positives = 100/308 (32%), Gaps = 29/308 (9%)

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +     + +   K   ++ +V+ G     + E  ++R   V+ +V  +      +LL+  
Sbjct: 67  IEETIKVIDVLKKIMPEVKIVLGGPEVSYDTEHWMKRLANVDFIVVGEGEETFHQLLQEL 126

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDG-----------GYNRKRGVTA------FLTIQEGC 186
              ++          K E + I+ G            Y     +        +     GC
Sbjct: 127 EGDRKFHFVYGLAYRKGEEVIIMPGRPKADLNELPSPYRFAEDIPELGKRVVYFETSRGC 186

Query: 187 DKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT 246
              C FC+     G      + +   +   LIDNG   I  + +  N  R   L+  K  
Sbjct: 187 PFSCQFCLSSIEVG-VRYYDIERTKSDILYLIDNGAKLIKFVDRTFNIKRDYALEMFKFL 245

Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL-DVLMPYLHLPVQSGSDRILKS 305
             +    + + +              M   ++    +     +    + VQS +D   + 
Sbjct: 246 IENHRGCVFQFE---------ITADIMRPEVLDYLAENAPPGVFRFEIGVQSTNDPTNEL 296

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           + RR    +  + + +++     I    D I G P E  + FR T + V  +G  +    
Sbjct: 297 VKRRQNFTKLSRTVTKVKQS-GKIDQHLDLIAGLPLEDYNTFRKTFNDVFALGPEELQLG 355

Query: 366 KYSPRLGT 373
                 GT
Sbjct: 356 FLKMLRGT 363


>gi|293610005|ref|ZP_06692306.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292827237|gb|EFF85601.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 792

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 57/297 (19%), Positives = 97/297 (32%), Gaps = 50/297 (16%)

Query: 151 DTDYSVEDKFERLSIV---DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRS 206
           + DY  +  + RL      D  +     +   + I  GC   CTFC +    G  I +RS
Sbjct: 386 EMDYVFDLPYARLPHPTYGDARFPAFDMIKFSVNIMRGCFGGCTFCSITEHEGRIIQNRS 445

Query: 207 LSQVVDEARKLIDNGVCEITLLGQ------NVNAWRGKGLDGEK---------------- 244
              ++ E  K+ D       ++        N+     K  + EK                
Sbjct: 446 EDSILREIEKIRDTAPNFTGIISDLGGPTANMYRLHCKDPEIEKNCRKPSCVYPGVCQNL 505

Query: 245 ----CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL--DVLMPYLHLPVQSG 298
                    L      IKG+ ++   +    D++    +   +L    +  YL +  +  
Sbjct: 506 HTDHAPLVQLYRKARAIKGVKKILIGSGLRYDLAVLNPEYVKELVQHHVGGYLKIAPEHT 565

Query: 299 SDRILKSMNRR--HTAYEYRQIIDRI-RSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
               L  M +    T   ++Q+ DR  +    +  +   FI   PG +D D       + 
Sbjct: 566 EQGPLSKMMKPGIGTYDRFKQMFDRFSKEAGKEQYLIPYFIAAHPGTSDYDMMHLAIWLK 625

Query: 356 KIGY--AQAFSFKYSPR------------LGTPGSNMLEQVDENVKAERLLCLQKKL 398
           K G+   Q  +F  SP                  +   E+VD  VK E+   L K  
Sbjct: 626 KNGFRADQVQTFYPSPMATATTMYYSGKNPLAKVARYTEKVDI-VKGEKRRRLHKAF 681


>gi|253681310|ref|ZP_04862108.1| radical SAM protein, family [Clostridium botulinum D str. 1873]
 gi|253562548|gb|EES91999.1| radical SAM protein, family [Clostridium botulinum D str. 1873]
          Length = 310

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 35/208 (16%), Positives = 69/208 (33%), Gaps = 20/208 (9%)

Query: 181 TIQEGCDKFCTFCVVPYT------RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA 234
           TI +G    C +C    +      R   IS   + + +  +     G             
Sbjct: 42  TISKG---GCIYCSERGSGDFAGDRNFSISYQFNNIKEMMKNKWKQGKYIAYFQAYTNTY 98

Query: 235 WRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL-DVLMPYLHL 293
                                   G+V L    + P  +SD +I    +    +  ++ L
Sbjct: 99  ASVSE-------LRKKYEEAINQDGVVALAI-ATRPDCLSDEIINLISECNKKIYTWVEL 150

Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
            +Q+ ++   K +NR +    +   ++R+R+   D+ + +  I G PGE  +D   T+  
Sbjct: 151 GLQTSNENTAKIINRGYELPIFEDSLNRLRNKNIDVVVHT--IFGLPGEEKEDMLNTIKY 208

Query: 354 VDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           + +               GTP   +  Q
Sbjct: 209 LREKDIQGIKIHLLHLLKGTPMVKLYNQ 236


>gi|325124164|gb|ADY83687.1| hypothetical protein BDGL_003101 [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 792

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 57/297 (19%), Positives = 97/297 (32%), Gaps = 50/297 (16%)

Query: 151 DTDYSVEDKFERLSIV---DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRS 206
           + DY  +  + RL      D  +     +   + I  GC   CTFC +    G  I +RS
Sbjct: 386 EMDYVFDLPYARLPHPTYGDARFPAFDMIKFSVNIMRGCFGGCTFCSITEHEGRIIQNRS 445

Query: 207 LSQVVDEARKLIDNGVCEITLLGQ------NVNAWRGKGLDGEK---------------- 244
              ++ E  K+ D       ++        N+     K  + EK                
Sbjct: 446 EDSILREIEKIRDTAPNFTGIISDLGGPTANMYRLHCKDPEIEKNCRKPSCVYPGVCQNL 505

Query: 245 ----CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL--DVLMPYLHLPVQSG 298
                    L      IKG+ ++   +    D++    +   +L    +  YL +  +  
Sbjct: 506 HTDHAPLVQLYRKARAIKGVKKILIGSGLRYDLAVLNPEYVKELVQHHVGGYLKIAPEHT 565

Query: 299 SDRILKSMNRR--HTAYEYRQIIDRI-RSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
               L  M +    T   ++Q+ DR  +    +  +   FI   PG +D D       + 
Sbjct: 566 EQGPLSKMMKPGIGTYDRFKQMFDRFSKEAGKEQYLIPYFIAAHPGTSDYDMMHLAIWLK 625

Query: 356 KIGY--AQAFSFKYSPR------------LGTPGSNMLEQVDENVKAERLLCLQKKL 398
           K G+   Q  +F  SP                  +   E+VD  VK E+   L K  
Sbjct: 626 KNGFRADQVQTFYPSPMATATTMYYSGKNPLAKVARYTEKVDI-VKGEKRRRLHKAF 681


>gi|302671372|ref|YP_003831332.1| oxygen-independent coproporphyrinogen III oxidase HemN2
           [Butyrivibrio proteoclasticus B316]
 gi|302395845|gb|ADL34750.1| oxygen-independent coproporphyrinogen III oxidase HemN2
           [Butyrivibrio proteoclasticus B316]
          Length = 389

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 39/210 (18%), Positives = 74/210 (35%), Gaps = 22/210 (10%)

Query: 186 CDKFCTFCVVPYTR---GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG 242
           C + C +C         G   S      +D    +  N   + T+              G
Sbjct: 16  CVRKCLYCDFLSFNCKAGEIKSY--FNALDAEIAMACNSYRDFTIKSI--------FFGG 65

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY-------LHLPV 295
              +F D  +  + ++ + R  +      ++S  +  A   LD L  Y       + +  
Sbjct: 66  GTPSFVDSAHICNTLEHI-RENFQVDVNAEISIEVNPASAILDKLTDYRRAGINRISIGA 124

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
           QS +D  LK + R H +  + +     R    D  I+ D +   P +T D +  T++ V 
Sbjct: 125 QSLNDGELKKIGRAHNSAMFYETFANARKAGFD-NINIDIMSALPDQTMDSYMETLEKVV 183

Query: 356 KIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            +G     ++      GTP  +M   + + 
Sbjct: 184 SLGPEHISAYSLIVEEGTPFYDMDLNLPDE 213


>gi|289433360|ref|YP_003463233.1| radical SAM protein [Dehalococcoides sp. GT]
 gi|288947080|gb|ADC74777.1| Radical SAM domain protein [Dehalococcoides sp. GT]
          Length = 610

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 51/279 (18%), Positives = 106/279 (37%), Gaps = 31/279 (11%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGK 238
           + I  GC + C FC           R   +V+     ++DN G  EI+LL   ++     
Sbjct: 258 VEISRGCSRGCRFCSAGILYRPVRVRPTEEVITAVEGIMDNCGYDEISLLS--LSCSDYP 315

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
           G++G   T ++           + L   +      S  L+            L    ++ 
Sbjct: 316 GIEGLVKTLAEKYA-----DKHLALSLPSLRLTPDSVSLVNVLAGARK--SGLTFAPEAA 368

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPD--IAISSDFIVGFPGETDDDFRATMDLVDK 356
           S R+ + +N+  +     ++    R+       +    F++G P ETD+D  A   +V K
Sbjct: 369 SPRLQRVINKLTSEE---ELCATARTAFESGWTSFKMYFMIGLPTETDEDAAAICQMVGK 425

Query: 357 I-----------GYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLRE--QQV 403
           +              +     Y P+  TP      Q+DE     R   +++ L+    ++
Sbjct: 426 VNALSRIAPGRRPQIRLSLASYVPKAHTP-FQWEAQLDEESLYRRADIVRQGLKRWGIKL 484

Query: 404 SFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
           S++D  +  ++E +  +  +  GK++  + W +    ++
Sbjct: 485 SWSDTRM-SLLEAVFSRGDRRLGKVI-YTAWQKGAKFDA 521


>gi|225026883|ref|ZP_03716075.1| hypothetical protein EUBHAL_01137 [Eubacterium hallii DSM 3353]
 gi|224955807|gb|EEG37016.1| hypothetical protein EUBHAL_01137 [Eubacterium hallii DSM 3353]
          Length = 657

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 38/242 (15%), Positives = 83/242 (34%), Gaps = 19/242 (7%)

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG-IEISRS 206
           ++++T ++     + +  V   ++       +     GC   C++C+    +     S  
Sbjct: 223 KIINTGFATLMDMDTIPFVYEDFHLFEHKILYYETSRGCPFCCSYCLSSVDKTVRFRSLP 282

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
           +  V  E    ++  V ++  + +  N  R + +D            +    G+    + 
Sbjct: 283 I--VKKELDAFLEAKVPQVKFVDRTFNCNRQRAIDIWSYL-------VEHDNGITNFHFE 333

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
            S      + L         L+  L + VQS +   + +++R     +    +DR+  + 
Sbjct: 334 ISSDLLGEEELELFAKMRPGLI-QLEIGVQSTNGETVDAIHRHMDLDKLFHYVDRVHEL- 391

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
            +I    D I G P E  + F  + D +      Q          GT        ++E V
Sbjct: 392 GNIHQHLDLIAGLPYENYERFGCSFDDLYAHEPDQLQLGFLKVLKGT-------MMEEEV 444

Query: 387 KA 388
           K 
Sbjct: 445 KK 446


>gi|326531856|dbj|BAK01304.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 377

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 35/186 (18%), Positives = 70/186 (37%), Gaps = 17/186 (9%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQV--VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
           C + C FC V  +           +  +  A  +   GV  + L   +    R    DG 
Sbjct: 138 CTRGCRFCAVKTSNKPA---PPDALEPLKTAVAVASWGVDYVVLTSVD----RDDIPDGG 190

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV--LMPYLHLPVQSGSDR 301
              F++ + +L E+K  + +   TS  R      ++A   L    L  Y H  +++    
Sbjct: 191 SGHFAETVRALKELKPTILVECLTSDFRGD----LEAVASLANSGLDVYAH-NIETVRSM 245

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
                + R    +   ++ + ++ +  +   S  ++G  GETD++ + TM  +  I    
Sbjct: 246 QRIVRDPRAGYEQSLAVLKQAKACKEGMVTKSSIMLGL-GETDEEIKQTMADLRAIDVDI 304

Query: 362 AFSFKY 367
               +Y
Sbjct: 305 LTLGQY 310


>gi|238019507|ref|ZP_04599933.1| hypothetical protein VEIDISOL_01376 [Veillonella dispar ATCC 17748]
 gi|237864206|gb|EEP65496.1| hypothetical protein VEIDISOL_01376 [Veillonella dispar ATCC 17748]
          Length = 380

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 43/211 (20%), Positives = 71/211 (33%), Gaps = 19/211 (9%)

Query: 175 GVTAFLTIQEGCDKFCTFCVVPYTRGIE-ISR-SLSQVVDEARKLIDN----GVCEITLL 228
           G+  F     GC   CTFC      G   IS  +   +       +         E+   
Sbjct: 5   GMIPFFIPHVGCPYVCTFCNQSRITGQSGISHLTPDYIKKTITDYVGKKRNDKFWEVAFY 64

Query: 229 GQNVNAWRGKGLDGEKCTFSDLLYSLSE--IKGLVRLRYTTSHPRDMSDCLIKAHGDLDV 286
           G +  A      D +          L +  I G+ R         D +  L++++G    
Sbjct: 65  GGSFTAIH---RDLQHTLLEPAYEMLQQDIIDGI-RCSTRPDAVGDKAITLLQSYG---- 116

Query: 287 LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDD 346
            +  + L VQS +D IL    R HTA E    + R++     + +    + G  GET + 
Sbjct: 117 -VKTVELGVQSMNDGILVDAKRGHTAQEVVDAVARLKQR--GMTVGVQLLPGLKGETWET 173

Query: 347 FRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
              T   V K+       +       T  ++
Sbjct: 174 ILETAIAVVKLEPDFVRIYPVLVIENTELAD 204


>gi|317130112|ref|YP_004096394.1| lipoic acid synthetase [Bacillus cellulosilyticus DSM 2522]
 gi|315475060|gb|ADU31663.1| lipoic acid synthetase [Bacillus cellulosilyticus DSM 2522]
          Length = 293

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 36/215 (16%), Positives = 77/215 (35%), Gaps = 15/215 (6%)

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR-SLSQVVD 212
           ++V ++    +I +    RK     F+ + + C + C FC V      E+ R    +V D
Sbjct: 37  HTVCEEARCPNIHECWAERK--TATFMILGDTCTRACRFCAVKTGLPTELDRQEPERVAD 94

Query: 213 EARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
              ++   G+    +        R    DG    F++ + ++        +    S    
Sbjct: 95  SVAQM---GLKHTVITAV----ARDDLKDGGAEIFAETVKAIRRKNPFTTVEVLPSDMGG 147

Query: 273 MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAIS 332
             + L         ++ +    V+  +      +  R T     + + R + ++P+I   
Sbjct: 148 KEENLKILMDAKPDILNHNIETVKRLTP----RVRARATYERSLEFLRRAKEMKPNIPTK 203

Query: 333 SDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           S  ++G  GET ++   TMD +           +Y
Sbjct: 204 SSLMIGL-GETKEEIIETMDDLRANNVDIMTIGQY 237


>gi|281411486|ref|YP_003345565.1| Radical SAM domain protein [Thermotoga naphthophila RKU-10]
 gi|281372589|gb|ADA66151.1| Radical SAM domain protein [Thermotoga naphthophila RKU-10]
          Length = 447

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 44/252 (17%), Positives = 85/252 (33%), Gaps = 23/252 (9%)

Query: 126 VVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQE- 184
           +V        LP  LE   F  + +  D+          + D  Y     V   + I   
Sbjct: 158 IVYEKGDLVFLPSFLESLGFPSKEIPADW--------FEVFDPMYELYNRVGYLVFITTL 209

Query: 185 GCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLID-NGVCEITLLGQNVNAWRGKGLDGE 243
           GC   C++C V         R+  +VV+   K ++   V ++      + A         
Sbjct: 210 GCPFRCSYCAVHRLWNGLRVRTPERVVETIEKYLNIFKVEDVVFFDDAILAS-------- 261

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTT-SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
              F DLL  + E +  VR       H R + +       + +     + L  ++     
Sbjct: 262 -GRFKDLLKLIVEKRWPVRFHLPNGIHARLLDEETAFLLKEAN--FRTIKLGYETSGRLQ 318

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
            ++  + +     R      ++   +  +S+  +V  PG+T +D    + +    G    
Sbjct: 319 RETGGKVYDEDLVRAARILRKAGFTEKEVSAYIMVNMPGQTKEDVLNAVKVCLSEGIG-I 377

Query: 363 FSFKYSPRLGTP 374
              +Y+P  GT 
Sbjct: 378 SINEYTPIPGTK 389


>gi|50083500|ref|YP_045010.1| hypothetical protein ACIAD0220 [Acinetobacter sp. ADP1]
 gi|49529476|emb|CAG67188.1| conserved hypothetical protein [Acinetobacter sp. ADP1]
          Length = 800

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 48/264 (18%), Positives = 85/264 (32%), Gaps = 35/264 (13%)

Query: 151 DTDYSVEDKFERLSIV---DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRS 206
           + DY  +  + RL      D  +     +   + I  GC   CTFC +    G  I +RS
Sbjct: 389 EMDYVFDLPYARLPHSAYGDARFPAFDMIKFSVNIMRGCFGGCTFCSITEHEGRIIQNRS 448

Query: 207 LSQVVDEARKLIDNGVCEITLLGQ------NVNAWRGKGLDGEK---------------- 244
              ++ E  K+ D       ++        N+     K  + EK                
Sbjct: 449 EESILREIEKIRDTAPQFTGIISDLGGPTANMYRLACKDPEIEKNCRKPSCVYPGVCQNL 508

Query: 245 ----CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL--DVLMPYLHLPVQSG 298
                    L      IKG+ ++   +    D++    +   +L    +  YL +  +  
Sbjct: 509 HTDHTPLVQLYRKARAIKGVKKILIGSGLRYDLAVLNPEYVKELVQHHVGGYLKIAPEHT 568

Query: 299 SDRILKSMNRR--HTAYEYRQIIDRI-RSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
               L  M +    T   ++Q+ DR  +    +  +   FI   PG TD D       + 
Sbjct: 569 EQGPLSKMMKPGIGTYDRFKQMFDRFSKEAGKEQYLIPYFIAAHPGTTDYDMMHLAIWLK 628

Query: 356 KIGYAQAFSFKYSPRLGTPGSNML 379
           K G+       + P      + M 
Sbjct: 629 KNGFRADQVQTFYPSPMATATTMY 652


>gi|37524249|ref|NP_927593.1| coproporphyrinogen III oxidase [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36783672|emb|CAE12525.1| oxygen-independent coproporphyrinogen III oxidase
           (coproporphyrinogenase) (coprogen oxidase) [Photorhabdus
           luminescens subsp. laumondii TTO1]
          Length = 457

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 38/238 (15%), Positives = 74/238 (31%), Gaps = 25/238 (10%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C K C FC         ++R   +  +  + L         L          +   G   
Sbjct: 62  CHKLCYFC----GCNKLVTRRKHKADEYLQWLEREIRGRAKLFS---GRKVSQMHWGGGT 114

Query: 246 TFSDLLYSLSEIKGLVRLRY---------TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQ 296
                   +S++ GL+R  +             PR++   +I            L + VQ
Sbjct: 115 PTYLNKNQISKLMGLLRHHFDFLPDAEISIEIDPREIELDMIDHLRSEG--FNRLSMGVQ 172

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
             +  +   +NR         ++ R R    + + S D I G P +T + F  T++ V  
Sbjct: 173 DFNKEVQHLVNREQDEEFIFALVARARETGFN-STSIDLIYGLPKQTPESFAFTLERVLA 231

Query: 357 IGYAQAFSFKYSPRLGTPGSNM---LEQVDENVKAERLLCLQKKLREQQVSFNDACVG 411
           +   +   F Y+       +        +    +   L  LQ+ +     +     +G
Sbjct: 232 LSPDRMSVFNYAHLPSLFAAQRKIKEHDLPSAEQK--LDILQETIATLTSNGYQ-FIG 286


>gi|238759871|ref|ZP_04621027.1| Oxygen-independent coproporphyrinogen III oxidase [Yersinia aldovae
           ATCC 35236]
 gi|238701932|gb|EEP94493.1| Oxygen-independent coproporphyrinogen III oxidase [Yersinia aldovae
           ATCC 35236]
          Length = 464

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 42/250 (16%), Positives = 86/250 (34%), Gaps = 26/250 (10%)

Query: 174 RGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS-------QVVDEARKLIDNGVCEIT 226
           R ++ ++ I   C K C FC        +  ++         ++   A   +   V ++ 
Sbjct: 58  RPLSLYVHIPF-CHKLCYFCGCNKLVTRQQHKADEYLAVLEKEIRQRAALFVGRQVSQMH 116

Query: 227 LLGQNVNAWRGKGLDGEKCTFSDLLYSLSE----IKGLVRLRYTTSHPRDMSDCLIKAHG 282
             G       G      K   + L+  L E    + G  +         ++   L   H 
Sbjct: 117 WGG-------GTPTYLNKTQITHLMNLLRENFDFLPGAEQSIEVDPREIELD-VLDHLHA 168

Query: 283 DLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGE 342
           +       L + VQ  +  + + +NR         +I R +++  + + + D I G P +
Sbjct: 169 EG---FNRLSMGVQDFNKEVQRLVNREQDEDFIFALIARAKALGFN-STNIDLIYGLPKQ 224

Query: 343 TDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQ 401
           T + F  T+  V ++   +   F Y+       +   ++  D     +RL  LQ  +   
Sbjct: 225 TPESFAFTLKRVAELNPDRLSVFNYAHLPSLFAAQRKIKDADLPSAEQRLDILQHTISFL 284

Query: 402 QVSFNDACVG 411
             S     +G
Sbjct: 285 TESGYQ-FIG 293


>gi|260773277|ref|ZP_05882193.1| lipoate synthase [Vibrio metschnikovii CIP 69.14]
 gi|260612416|gb|EEX37619.1| lipoate synthase [Vibrio metschnikovii CIP 69.14]
          Length = 321

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 28/182 (15%), Positives = 64/182 (35%), Gaps = 10/182 (5%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V + R   +    ++    A  + D  +  + +   +    R    DG   
Sbjct: 94  CTRRCPFCDVAHGRPNAV--DAAEPKKLAETIRDMKLKYVVITSVD----RDDLRDGGAE 147

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
            F+D    +  +   +R+       R   D  ++   D    +   +L     + R+ + 
Sbjct: 148 HFADCNREIRALNPGIRIETLVPDFRGRMDIALEKLKDNPPDVLNHNL---ETAPRLYRK 204

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
                      +++ + +   PD+   S  ++G  GET ++    +  + + G       
Sbjct: 205 ARPGANYKWSLELLRKFKEQHPDVPTKSGIMMGL-GETKEEIIQVLKDLREHGVTMLTLG 263

Query: 366 KY 367
           +Y
Sbjct: 264 QY 265


>gi|269926469|ref|YP_003323092.1| oxygen-independent coproporphyrinogen III oxidase [Thermobaculum
           terrenum ATCC BAA-798]
 gi|269790129|gb|ACZ42270.1| oxygen-independent coproporphyrinogen III oxidase [Thermobaculum
           terrenum ATCC BAA-798]
          Length = 389

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 46/239 (19%), Positives = 78/239 (32%), Gaps = 33/239 (13%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C   C +C      G       + + D     +  G   +T   Q + A       G   
Sbjct: 25  CKTKCIYCDFNCYAGKN-----ALIPDYV---LALGKELVTYSDQGLVARTLYMGGGTPS 76

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCL------------IKAHGDLDVLMPYLHL 293
             S     +  I G  R         +++               I A G     +  + +
Sbjct: 77  LLS--PSQVLYIVGTARDYLRLVDGAEITMEANPGTVSEQYFRDILAMG-----VNRISI 129

Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
            +QS  D  L+ + R HT  E  +     R+   +  IS D I G P +T DD+R  +  
Sbjct: 130 GIQSFKDDDLRRLARHHTVEEALEAYRAARAAGFE-NISVDLIYGLPFQTLDDWRHNLSR 188

Query: 354 VDKIGYAQAFSFKYSPRLGTPGSNM-----LEQVDENVKAERLLCLQKKLREQQVSFND 407
           V  I       +  +   GTP   +     L   D+++ A+     Q+ L +      +
Sbjct: 189 VVDIEPDHISLYALTVEEGTPLHRLISRGKLPSPDDDLMADMYELAQEVLEKAGYIHYE 247


>gi|282600881|ref|ZP_05980013.2| putative oxygen-independent coproporphyrinogen III oxidase
           [Subdoligranulum variabile DSM 15176]
 gi|282571253|gb|EFB76788.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Subdoligranulum variabile DSM 15176]
          Length = 487

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 58/343 (16%), Positives = 122/343 (35%), Gaps = 49/343 (14%)

Query: 39  YDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEG 98
           Y++     +FF    +     +  D ++     +  +  + V   LG   + +++   E 
Sbjct: 13  YEAEHTARIFFPGAEKVTQIPESGDFVL----AVSHEKTDFVLLRLGEALSWRSALRAED 68

Query: 99  GDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVED 158
           GD    +   + +   E+  +  P      G  T  R   ++   R    +  T+  +ED
Sbjct: 69  GDAEYTLCTLLFELLREKTGQNPPW-----GMMTGVRPVRIIHDLRA---MGATETEIED 120

Query: 159 KF--------ERLSIVDGGYNRKRGVTAFLTIQE-----G---CDKFCTFCVVPYTRGIE 202
           +F        E+ ++  G  + +R V A     +     G   C   C++C         
Sbjct: 121 RFLRHFACTPEKFTLARGIADLQRPVLAGADPMDCSVYAGIPFCPTRCSYCS-------F 173

Query: 203 ISRSLSQ--VVDEARKLIDNGVCEITLLGQN---VNAWRGKGLDGEKCTFSDLLYSLSEI 257
           +SR++         +  +D    E+T + Q              G     S     L ++
Sbjct: 174 VSRTVGDKATRALVQPYVDKLCEELTAIRQTADRCGLHIRTFYIGGGTPTSLSAAQLEQL 233

Query: 258 KGLVRLRYTTSHPRDMSDC---LIKAHGDLDVLMPYL-----HLPVQSGSDRILKSMNRR 309
            G +   +  S   + +         + +   ++         +  Q+ SD +L+++ RR
Sbjct: 234 MGHIARTFDLSTLDEYTVEAGRPDCTNAEKLRIIKQYGATRISINPQTFSDEVLRNIGRR 293

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352
           HTA +        R+      I+ D I G PG+T + F  +++
Sbjct: 294 HTAQDIIDCFAAARAAGHQ-NINMDLIAGLPGDTVEGFTHSLE 335


>gi|150395235|ref|YP_001325702.1| coproporphyrinogen III oxidase [Sinorhizobium medicae WSM419]
 gi|150026750|gb|ABR58867.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Sinorhizobium medicae WSM419]
          Length = 381

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 31/202 (15%), Positives = 63/202 (31%), Gaps = 16/202 (7%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C   C +C             + Q        +        L G         G  G   
Sbjct: 14  CAAKCPYC---DFNSHVRHTPVEQP-RFVAAFLKEMAAVRDLSGPRTVTSIFMG--GGTP 67

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY-------LHLPVQSG 298
           +  D     + + G+ R  +      +++     +  +      Y       + L VQ+ 
Sbjct: 68  SLMDPQTVEAILDGIAR-HWHVPDGIEITMEANPSSVEATRFRGYRAAGVNRVSLGVQAL 126

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           +DR LK + R H   +  + I   R + P ++   D I   P +T +++   +       
Sbjct: 127 NDRDLKFLGRLHNVEDALKAIRLAREIFPRMSF--DLIYARPNQTVEEWERELKEAVSYA 184

Query: 359 YAQAFSFKYSPRLGTPGSNMLE 380
                 ++ +   GTP   + +
Sbjct: 185 VDHLSLYQLTIEEGTPFYGLHK 206


>gi|256750710|ref|ZP_05491595.1| Radical SAM domain protein [Thermoanaerobacter ethanolicus CCSD1]
 gi|256750293|gb|EEU63312.1| Radical SAM domain protein [Thermoanaerobacter ethanolicus CCSD1]
          Length = 380

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 31/200 (15%), Positives = 71/200 (35%), Gaps = 11/200 (5%)

Query: 185 GCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK 244
           GC   C FC      G +         +  R+ I+  +  +    +   ++ G    G  
Sbjct: 16  GCPFKCVFCNQNSITGQQQ----EITEEYVRQTIETHLKTLPSNAEIEVSFFGGSFTGIP 71

Query: 245 CTFSDLLYSLSEI---KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
               +L   +++    KG +     ++ P  +   +++        +  + L VQS  + 
Sbjct: 72  QDKQNLYLGIAKEYLDKGKIDAIRLSTRPDYIDTEILQNLKRYK--VSIIELGVQSMDEE 129

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
           +L    R HT+ +  + ++ IR    D  +    ++G PG+  +    T   + ++    
Sbjct: 130 VLLKSRRGHTSEDVVKAVNLIRQY--DFKLGLQIMIGLPGDNLEKSLNTAYKIVELKPDF 187

Query: 362 AFSFKYSPRLGTPGSNMLEQ 381
              +       T    M ++
Sbjct: 188 VRIYPALVIKNTYLERMYKE 207


>gi|167044662|gb|ABZ09333.1| putative Radical SAM superfamily protein [uncultured marine
           microorganism HF4000_APKG7H23]
          Length = 287

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 37/223 (16%), Positives = 75/223 (33%), Gaps = 11/223 (4%)

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G R +     +    E     + G   +R    F+ + + C + C +C V   R   + 
Sbjct: 22  AGLRQLVRASELHTVCEEARCPNIGECWERRAATFMVLGDVCTRACRYCAVTSGRPGGV- 80

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
             L +    AR +   G+    +   +    R    DG    FS  +  + ++    ++ 
Sbjct: 81  -DLEEPGRLARTVARLGLRYCVITSVD----RDDLPDGGAFIFSQCIQQVRDLLPTCQVE 135

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
                 +     L         ++ +    V+    R+  S+  +       +++ R + 
Sbjct: 136 VLVPDFQGSWPALQSVLRAGPAVLNHNIETVR----RVFHSVRPKGDYDLSLELLHRAKE 191

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
             P I   S  +VG  GET  +   TM  +  +G       +Y
Sbjct: 192 YAPGIPTKSGLMVGL-GETVQEVEETMADLRAVGCDLLTIGQY 233


>gi|90423220|ref|YP_531590.1| radical SAM family protein [Rhodopseudomonas palustris BisB18]
 gi|90105234|gb|ABD87271.1| Radical SAM [Rhodopseudomonas palustris BisB18]
          Length = 528

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 50/350 (14%), Positives = 107/350 (30%), Gaps = 46/350 (13%)

Query: 56  VNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGE 115
               + A+ + ++  HI+      +                   DL V + G    A  +
Sbjct: 70  AEDFEWAEAVFVSGMHIQRNQMNDICRRAHAF------------DLAVAIGGPSVSACPD 117

Query: 116 EILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVD--TDYSVEDKFERLSIVDGGYNRK 173
                 P  + +   +       L+ R        +       ED+ +        Y   
Sbjct: 118 ----HYPSFDYLHIGELGDATDALIARLARDPSRPEQQVVLQTEDRLDMTLFPIPAYELA 173

Query: 174 RGVTAF---LTIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVC-EITLL 228
                F   +    GC   C FC +P   G     ++  Q+V E  ++++ G+   +  +
Sbjct: 174 ECSKYFLGSVQYSSGCPYQCEFCDIPGLYGRNPRLKTPEQIVTELDRMLECGIQGSVYFV 233

Query: 229 GQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL----VRLRYTTSHPRDMSDCLIKAHGDL 284
             N          G +    DLL  L E +      +RL    +        +++   + 
Sbjct: 234 DDNFI--------GNRKAALDLLPHLVEWQKKTGFSIRLACEATLNIAKRPEILQLMRE- 284

Query: 285 DVLMPYLHLPVQSGSDRILKSMNRRHT-AYEYRQIIDRIRSVRPDIAISSDFIVGFPGET 343
                 +   +++     L++M++ H       + I+ +      I + S  I+G   + 
Sbjct: 285 -AYFVTIFCGIETPEPDALRAMHKDHNMTVPIMEAIETLNGY--GIEVVSGIILGLDTDK 341

Query: 344 DDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLC 393
            D  +  +  + +                TP  + LE      +  RL+ 
Sbjct: 342 PDTGKNLLHFIAESQIPLLTINLLQALPKTPLWDRLE------REHRLIA 385


>gi|237747202|ref|ZP_04577682.1| lipoyl synthase [Oxalobacter formigenes HOxBLS]
 gi|229378553|gb|EEO28644.1| lipoyl synthase [Oxalobacter formigenes HOxBLS]
          Length = 331

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 37/218 (16%), Positives = 72/218 (33%), Gaps = 14/218 (6%)

Query: 152 TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV- 210
            D+ +    +  S  +       G  AF+ + + C + C FC V + R       L +  
Sbjct: 70  ADHKLVTVCDEASCPNRAECYGNGTAAFMIMGDKCTRRCPFCDVAHGRPD----PLDENE 125

Query: 211 -VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSH 269
               AR +   G+  + +   N    R    DG    F   L ++ ++    R+   T  
Sbjct: 126 PEQLARMIALLGLSYVVVTSVN----RDDLRDGGASHFVACLKTIKKVSPDTRVEILTPD 181

Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329
            +   D  + +        P +         R+ +            +++       P I
Sbjct: 182 FKGRMDKALDSLCSFP---PDVFNHNLETVPRLYRQARPGADYAYSLELLKEFGDRCPHI 238

Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
              S  +VG  GETD++    M+ +     +     +Y
Sbjct: 239 PTKSGLMVGL-GETDEEIIQVMEDLRAHKVSMLTIGQY 275


>gi|291333786|gb|ADD93470.1| hypothetical protein [uncultured marine bacterium
           MedDCM-OCT-S04-C123]
          Length = 130

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 22/126 (17%), Positives = 32/126 (25%), Gaps = 34/126 (26%)

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK------------EK 425
           M  Q+   VK  R     +   E       A VG+++ VL+E                E 
Sbjct: 1   MANQIPIEVKEARKSRAMETQLEVSRELASAQVGKMMRVLVEGPADAAAIEESNIRSWEH 60

Query: 426 GKL----------------------VGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTL 463
           G L                         +P +   +             V+IT      L
Sbjct: 61  GLLRSKSEKSAISLDTSTSWSIARGEADAPDIDGRIYIQGRLMPHQFHVVQITGFTDYDL 120

Query: 464 YGELVV 469
             E V 
Sbjct: 121 IAEPVA 126


>gi|256831115|ref|YP_003159843.1| hypothetical protein Dbac_3355 [Desulfomicrobium baculatum DSM
           4028]
 gi|256580291|gb|ACU91427.1| conserved hypothetical protein [Desulfomicrobium baculatum DSM
           4028]
          Length = 317

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 31/133 (23%), Positives = 47/133 (35%), Gaps = 3/133 (2%)

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
           G       LL  L+ +  LV L   T  P  + +  +           +L L +QS  D 
Sbjct: 95  GPAERLRALLQELAGLPDLVGLAIGT-RPDCLDEEKLDILRSAPFEELWLDLGLQSAQDS 153

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
            L  +NR H A  +     +       I + +  I G PGE   DF  T+  V+ +  + 
Sbjct: 154 TLHRINRGHDAACFATWAQKAAER--GIKVCAHVITGLPGENLADFEQTILFVNSLPVSG 211

Query: 362 AFSFKYSPRLGTP 374
                      TP
Sbjct: 212 IKIHNLYICRDTP 224


>gi|197284320|ref|YP_002150192.1| lipoyl synthase [Proteus mirabilis HI4320]
 gi|227358536|ref|ZP_03842861.1| lipoyl synthase [Proteus mirabilis ATCC 29906]
 gi|238693167|sp|B4EV01|LIPA_PROMH RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|194681807|emb|CAR41050.1| lipoic acid synthetase [Proteus mirabilis HI4320]
 gi|227161247|gb|EEI46321.1| lipoyl synthase [Proteus mirabilis ATCC 29906]
          Length = 321

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 34/182 (18%), Positives = 67/182 (36%), Gaps = 10/182 (5%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V    G   +    + +  A+ + D G+  + +   +    R    DG   
Sbjct: 94  CTRRCPFCDV--AHGRPNAPDPQEPIKLAQTIKDMGLRYVVITSVD----RDDLRDGGAQ 147

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
            F+D + ++ E    +R+       R   D  ++   D     P +         R+ + 
Sbjct: 148 HFADCITAIREKNPNIRIETLVPDFRGRMDKALEILTDTP---PDVFNHNLENVPRVYRQ 204

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           +           +++R +   P+I   S  +VG  GET+++    M  + K G       
Sbjct: 205 VRPGANYQWSLTLLERFKQAHPNIPTKSGLMVGL-GETNEEIIDVMRDLRKHGVTMLTLG 263

Query: 366 KY 367
           +Y
Sbjct: 264 QY 265


>gi|256821563|ref|YP_003145526.1| lipoyl synthase [Kangiella koreensis DSM 16069]
 gi|256795102|gb|ACV25758.1| lipoic acid synthetase [Kangiella koreensis DSM 16069]
          Length = 341

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 40/260 (15%), Positives = 84/260 (32%), Gaps = 20/260 (7%)

Query: 115 EEILRRSPIVNVVVGPQTYYRLPELLE-RARFGKRVVDT-----DYSVEDKFERLSIVDG 168
           E+ + R P+   ++  +   R P+ +  R   G ++        +  +    E  S  + 
Sbjct: 39  EDKMARIPV--KIMPTEEMPRKPDWIRVRLPNGNQITKIKDMLRNNKLHTVCEEASCPNL 96

Query: 169 GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLL 228
                 G   F+ + + C + C FC V    G  +     +    A  +   G+  + + 
Sbjct: 97  PECFGHGTATFMIMGDICTRRCPFCDV--AHGRPLPLDPEEPQHLADSVKSMGLKYVVIT 154

Query: 229 GQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGD-LDVL 287
             +    R    DG     +D +    E    +++       R   +  +    D L  +
Sbjct: 155 SVD----RDDLRDGGSAHITDCVRVAKEQNPGLKVEVLVPDFRGRMEVALDLMADGLPDV 210

Query: 288 MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDF 347
             +    V     R+ K             ++   +   P I   S  ++G  GET+++ 
Sbjct: 211 FNHNLETV----PRLYKQARPGADYQWSLDLLKNFKERYPGIPTKSGLMIGL-GETNEEI 265

Query: 348 RATMDLVDKIGYAQAFSFKY 367
              M  +   G       +Y
Sbjct: 266 IEVMKDLRAHGVEMLTLGQY 285


>gi|118090596|ref|XP_423226.2| PREDICTED: similar to lipoic acid synthetase [Gallus gallus]
          Length = 385

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 36/184 (19%), Positives = 69/184 (37%), Gaps = 11/184 (5%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V   +         +  + A+ + + G+  + L   +    R    DG   
Sbjct: 150 CTRGCRFCSVKTAKNPP-PLDPEEPYNTAKAIAEWGLDYVVLTSVD----RDDMPDGGAE 204

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPR-DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304
            F+  +  L E    + +   T   R D++     A   LDV    +    +       K
Sbjct: 205 HFAKTVSHLKERNSKIVVECLTPDFRGDLNAVEKVALSGLDVYAHNVETVPE----LQRK 260

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
             + R    +  +++   + V+P +   +  ++G  GETD+   ATM L+ + G      
Sbjct: 261 VRDPRANFEQSVRVLKHAKEVQPRVISKTSLMLGL-GETDEQVLATMKLLREAGVDCLTL 319

Query: 365 FKYS 368
            +Y 
Sbjct: 320 GQYM 323


>gi|322434217|ref|YP_004216429.1| Radical SAM domain protein [Acidobacterium sp. MP5ACTX9]
 gi|321161944|gb|ADW67649.1| Radical SAM domain protein [Acidobacterium sp. MP5ACTX9]
          Length = 509

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 58/333 (17%), Positives = 113/333 (33%), Gaps = 41/333 (12%)

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +     +  +  +   D  +++ G       ++ L+ +  V+ VV  Q    L EL++ 
Sbjct: 77  MIRETVEIATAVKEWNPDFPIILGGWHPSLLPDQTLQAA-CVDYVVRGQGEDALLELVQH 135

Query: 143 ARF--------------GKRVVDTDYSVEDKFERLSI-------VDGGYNRKRGVTAFLT 181
            +               G +++ T          +          D          A  T
Sbjct: 136 LQTRSAPDLIPGIGFKRGGKLILTPERPLRPLVDMPPKAYQIADFDAYERGCGKRWAMYT 195

Query: 182 IQEGCDKFCTFCVVPYTRGIEISR-SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL 240
               C   C++C      G + +     Q V+E   L      E+  +  +        L
Sbjct: 196 SSLACPFNCSYCTNAGVYGRKWNALPPEQFVEETVDLTRRYQLEMLWVVDD---NFMVDL 252

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300
           D  +     L+ + S+ K  V+            D  +     L  +       V SGS 
Sbjct: 253 DRARGIAEGLVRAGSQFKWSVQATSNMVARLTHEDLKLLRRAGLHQICQ----GVDSGST 308

Query: 301 RILKSMNRRHTAYEYRQIID-RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV----D 355
           ++L+ M +  T  ++ QI +   R +  DI  S + I  FPGE   + R T+D +     
Sbjct: 309 KVLQLMGK--TFQDFDQIYESAARCLSADIRPSFNIIFAFPGEGRKERRETIDFMMDVCR 366

Query: 356 KIGYAQAFSFKYSPRLGTP----GSNMLEQVDE 384
           +   A+ ++  ++P  G P       +  +V +
Sbjct: 367 RFPGAEFWTNIFTPYPGAPIMQRAQELGIEVPK 399


>gi|77919493|ref|YP_357308.1| Fe-S oxidoreductase [Pelobacter carbinolicus DSM 2380]
 gi|77545576|gb|ABA89138.1| Fe-S oxidoreductase [Pelobacter carbinolicus DSM 2380]
          Length = 625

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 53/289 (18%), Positives = 90/289 (31%), Gaps = 41/289 (14%)

Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSLS 208
           +D  Y++    +              +   +T   GC   C FC +   +G  I SRS +
Sbjct: 280 LDGIYALPFSRKPHPGYRESIPAFEQIRFSVTSHRGCCGGCAFCAIASHQGKIIQSRSQA 339

Query: 209 QVVDEARKLI-DNGVC-EITLLGQNVNAWRG---------KGLDGEKCTFSDLLYSL--- 254
            +V E   +  D G    IT +G       G         K    + C F      L   
Sbjct: 340 SIVSEVTDMARDKGFRGTITDVGGPTANMYGMSCGNIKARKSCRRDGCLFPQPCRHLVIE 399

Query: 255 ----SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL---------HLPVQSGSDR 301
               + +   VR      H    S   +            L          +  ++ SD+
Sbjct: 400 DQAAASLLEKVRRLPGVKHVFVASGIRLDLLERQPAYFQQLLKHHVGGLLKVAPETLSDK 459

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSD----FIVGFPGETDDDFRATMDLVDKI 357
           + + M +   A  + + + + R+    +          I G PG T  D   T   + + 
Sbjct: 460 VARIMRKPG-AALFNRFLKQFRAYSRALDKRQSVVPYLIAGHPGCTLGDMVDTALFLKEN 518

Query: 358 GYAQAFSFKYSPRLGTPGSNMLE-------QVDENV-KAERLLCLQKKL 398
           G       +++P  GT  + M              V ++ R   LQK L
Sbjct: 519 GMRVEQVQEFTPTPGTLATCMYHTGVDPYSDTPVAVARSARERRLQKAL 567


>gi|15964126|ref|NP_384479.1| coproporphyrinogen III oxidase [Sinorhizobium meliloti 1021]
 gi|307301271|ref|ZP_07581033.1| oxygen-independent coproporphyrinogen III oxidase [Sinorhizobium
           meliloti BL225C]
 gi|307317942|ref|ZP_07597379.1| oxygen-independent coproporphyrinogen III oxidase [Sinorhizobium
           meliloti AK83]
 gi|15073302|emb|CAC41810.1| Putative oxygen-independent coproporphyrinogen III oxidase
           [Sinorhizobium meliloti 1021]
 gi|306896344|gb|EFN27093.1| oxygen-independent coproporphyrinogen III oxidase [Sinorhizobium
           meliloti AK83]
 gi|306903727|gb|EFN34314.1| oxygen-independent coproporphyrinogen III oxidase [Sinorhizobium
           meliloti BL225C]
          Length = 393

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 31/202 (15%), Positives = 63/202 (31%), Gaps = 16/202 (7%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C   C +C           + + Q        +        L G         G  G   
Sbjct: 26  CAAKCPYC---DFNSHVRHQPVDQP-RFVAAFLKEMAAVRALSGPRTVTSIFMG--GGTP 79

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY-------LHLPVQSG 298
           +  D     + + G+ R  +      +++     +  +      Y       + L VQ+ 
Sbjct: 80  SLMDPRTVEAILDGIARQ-WHVPDGIEITMEANPSSVEATRFRGYRAAGVNRVSLGVQAL 138

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           +DR LK + R H      + I   R + P ++   D I   P +T +++   +       
Sbjct: 139 NDRDLKFLGRLHDVENALKAIRLAREIFPRMSF--DLIYARPNQTVEEWERELKEAVSYA 196

Query: 359 YAQAFSFKYSPRLGTPGSNMLE 380
                 ++ +   GTP   + +
Sbjct: 197 VDHLSLYQLTIEEGTPFYGLHK 218


>gi|260912852|ref|ZP_05919338.1| lipoyl synthase [Pasteurella dagmatis ATCC 43325]
 gi|260633230|gb|EEX51395.1| lipoyl synthase [Pasteurella dagmatis ATCC 43325]
          Length = 320

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 30/214 (14%), Positives = 70/214 (32%), Gaps = 10/214 (4%)

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           + +    E  S  +       G   F+ +   C + C FC V    G  +     +    
Sbjct: 61  HGLHSVCEEASCPNLHECFNHGTATFMILGAICTRRCPFCDV--AHGKPLPPDPEEPRKL 118

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
           A  + D  +  + +   +    R    D     F++ +  + ++   +++       R  
Sbjct: 119 AETIQDMKLRYVVITSVD----RDDLPDRGAGHFAECVKEIRKLNPEIKIEILVPDFRGR 174

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
            +  +    D     P +         R+ + +          +++   +++ P I   S
Sbjct: 175 IEQALDKLKDNP---PDVFNHNLENVPRLYREIRPGADYEWSLKLLKDFKAMFPHIPTKS 231

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
             +VG  GET+++    M  +   G       +Y
Sbjct: 232 GLMVGL-GETNEEILQVMQDLRDHGVTMLTLGQY 264


>gi|78185113|ref|YP_377548.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Synechococcus sp. CC9902]
 gi|78169407|gb|ABB26504.1| coproporphyrinogen III oxidase, anaerobic [Synechococcus sp.
           CC9902]
          Length = 400

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 43/206 (20%), Positives = 78/206 (37%), Gaps = 27/206 (13%)

Query: 186 CDKFCTFC---VVPY---TRGIEI--SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG 237
           C + C +C   VVP     RG +   S S+   +      I +        G  ++    
Sbjct: 17  CHRRCYYCDFAVVPLGDRARGGQGPGSASIQSYLQVLHHEIASAPK-----GPPLSTVYF 71

Query: 238 KGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL-------MPY 290
            G  G     S     ++E+ G +RLRY      +++  +  A  D   L       +  
Sbjct: 72  GG--GTPSLLS--PAQIAELLGQLRLRYGLQEGAEITLEMDPASFDQHQLKEVLAFGVNR 127

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP--DIAISS-DFIVGFPGETDDDF 347
           + L  QS  D +L+ + RRH + +  +  + +       +++  S D I   PG+T +D+
Sbjct: 128 ISLGGQSFDDGVLEQLGRRHRSKDLLEACEWMDDAHRSGELSSWSLDLIQSLPGQTLEDW 187

Query: 348 RATMDLVDKIGYAQAFSFKYSPRLGT 373
              ++     G      +  S   GT
Sbjct: 188 CHQLNQAIACGSPHISIYDLSVEPGT 213


>gi|146292240|ref|YP_001182664.1| putative radical SAM protein [Shewanella putrefaciens CN-32]
 gi|145563930|gb|ABP74865.1| conserved hypothetical radical SAM protein [Shewanella putrefaciens
           CN-32]
          Length = 309

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 44/246 (17%), Positives = 80/246 (32%), Gaps = 39/246 (15%)

Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW--------RGKG 239
             CTFC V        S   + V+    + ++ G            A             
Sbjct: 43  GGCTFCNV-----ASFSHQTADVL-SITEQLEQGKSRYREAKPQAQADKFIAYFQAYTST 96

Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL--DVLMPYLHLPVQS 297
            D  +   +    ++    G +      + P  + D ++        D +  +L L +Q+
Sbjct: 97  YDEYQVLMAKYDEAVK--DGEIVGLCVGTRPDCVPDNVLDLLARYQADGVDVWLELGLQT 154

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
            +D  L+ +NR H    Y   + R R+    + + +  I+G P ET  D+ AT+  V + 
Sbjct: 155 ANDETLRRINRGHDFACYCDTVSRARAR--GLKVCTHLILGLPNETHSDYMATLAAVLQQ 212

Query: 358 GYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQI---- 413
           G             G+  +          KA R   L        +      VG++    
Sbjct: 213 GVDGLKLHPLHIVEGSTMA----------KAWRSGRLPLL----SLEDYARSVGEMIRHT 258

Query: 414 -IEVLI 418
             EV+ 
Sbjct: 259 PQEVIF 264


>gi|255012406|ref|ZP_05284532.1| coproporphyrinogen III oxidase [Bacteroides sp. 2_1_7]
          Length = 375

 Score = 60.3 bits (145), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 35/230 (15%), Positives = 74/230 (32%), Gaps = 14/230 (6%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C K C +C   +    E+      +    +++            + +    G     ++ 
Sbjct: 11  CAKRCLYCD--FFSNTEMKYKEPYINALIKEMELRKGYIGNEALETIYFGGGTPSQLDEK 68

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPR--DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
            F  +  ++  +  +      T      DM    +    +       + + VQS     L
Sbjct: 69  DFGKIFEAIYRLFDVAEQAEITLEANPDDMKREYVSLLRNYP--FNRVSMGVQSFHPEDL 126

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIA-ISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           + +NRRH   +  + ++  +     I  IS D I G P +T   +   +    ++     
Sbjct: 127 RFLNRRHDREQAIKAVELCKEY--GITNISIDLIYGLPNQTKQAWEENLRQAIRLDVPHL 184

Query: 363 FSFKYSPRLGTPGSNMLE-----QVDENVKAERLLCLQKKLREQQVSFND 407
            ++      GT    ++E      VDE +       L  +L E      +
Sbjct: 185 SAYHLIYEEGTALYKLMEAGKVTPVDEELSVSFFSTLIDRLAEAGYLHYE 234


>gi|313894896|ref|ZP_07828456.1| coproporphyrinogen dehydrogenase HemZ [Selenomonas sp. oral taxon
           137 str. F0430]
 gi|312976577|gb|EFR42032.1| coproporphyrinogen dehydrogenase HemZ [Selenomonas sp. oral taxon
           137 str. F0430]
          Length = 502

 Score = 60.3 bits (145), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 48/213 (22%), Positives = 84/213 (39%), Gaps = 9/213 (4%)

Query: 174 RGVTAFLTIQEGCDKFCTFCVVP--YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQN 231
           R V+ ++ I   C   C +C  P     G E  R   +V+          V  + L  QN
Sbjct: 171 RTVSVYVGIPF-CITRCLYCSFPANILPGEEKLRGFMRVLARDIAAAAADVAALGLTVQN 229

Query: 232 VNAWRGKGLDGEKCTFSDLLYSLSEI---KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLM 288
           +    G         F+++L  +        +V        P  MS   I         +
Sbjct: 230 IYVGGGTPTSLPNDFFAEMLEMVYNAFYGSSIVEFTVEAGRPDSMSAEKISCMKKH--CV 287

Query: 289 PYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFR 348
             + +  QS  +R L+ + RRHT  E  +++  +R+   ++ I+ D I+G PGET +D  
Sbjct: 288 TRVSVNPQSMQERTLRRIGRRHTPEEVVRMLHDLRAAY-EVHINMDVILGLPGETAEDVV 346

Query: 349 ATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +TM  V  +          + + G+    M+E+
Sbjct: 347 STMAQVTALAPDDITLHALAIKRGSQLRRMMEE 379


>gi|293393654|ref|ZP_06637964.1| oxygen-independent coproporphyrinogen III oxidase [Serratia
           odorifera DSM 4582]
 gi|291423989|gb|EFE97208.1| oxygen-independent coproporphyrinogen III oxidase [Serratia
           odorifera DSM 4582]
          Length = 457

 Score = 60.3 bits (145), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 42/247 (17%), Positives = 89/247 (36%), Gaps = 18/247 (7%)

Query: 173 KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNV 232
           +R ++ ++ I   C K C FC        +  ++   +V  AR++               
Sbjct: 50  ERPLSLYVHIPF-CHKLCYFCGCNKLVTRQTHKADDYLVALAREIAARAPLFA------- 101

Query: 233 NAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLH 292
                +   G           +S +  ++R  +      +MS  +     +LDVL    H
Sbjct: 102 GRQVSQMHWGGGTPTYLDKAQISRLVAMLRQNFDFLPDAEMSIEVDPREIELDVLDHLRH 161

Query: 293 -------LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDD 345
                  + VQ  +  + + +NR         +I R +++  + + + D I G P +T +
Sbjct: 162 EGFNRLSMGVQDFNKDVQRLVNREQDEDFIFALIARAKALGFN-STNIDLIYGLPRQTPE 220

Query: 346 DFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVS 404
            F  T+  V ++   +   F Y+       +   ++  D     ++L  LQ+ +     S
Sbjct: 221 SFAFTLARVAELNPDRLSVFNYAHLPDLFAAQRKIKDADLPDAQQKLDILQQTIASLTQS 280

Query: 405 FNDACVG 411
                +G
Sbjct: 281 GYQ-FIG 286


>gi|239908078|ref|YP_002954819.1| cobalamin vitamin B12-binding domain/radical SAM domain protein
           [Desulfovibrio magneticus RS-1]
 gi|239797944|dbj|BAH76933.1| cobalamin vitamin B12-binding domain/radical SAM domain protein
           [Desulfovibrio magneticus RS-1]
          Length = 540

 Score = 60.3 bits (145), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 46/323 (14%), Positives = 96/323 (29%), Gaps = 32/323 (9%)

Query: 58  SMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEI 117
             DD DL+ ++   +      +  S L  +R  K   I      L    G       EE+
Sbjct: 63  DWDDIDLLFVSGMLV------QRESLLRLLREAKARGI------LTAAGGAYPTTAPEEV 110

Query: 118 LRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT 177
           L      + ++  +    +PEL+     G+       + +                    
Sbjct: 111 LGA--GCDFLIQGEGETTIPELVAAITAGQTSGRFVCTDKPALADSPPPRYDLIAPGDYE 168

Query: 178 AF-LTIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW 235
           +  L    GC   C FC +    G     ++ +QV+ E   +   G      +  +    
Sbjct: 169 SLSLQTSRGCPFACEFCDIVSLFGRVPRHKTPTQVIAELEAIRQLGFRGTVFVADD---- 224

Query: 236 RGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM----SDCLIKAHGDLDVLMPYL 291
                 G +     +L S+ E +      +       +       LI           Y+
Sbjct: 225 ---NFIGNRPRAVAVLESIIEWQARHGEPFDFITQASINLGQDAPLIDLL--TAANFSYV 279

Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP-DIAISSDFIVGFPGETDDDFRAT 350
            + ++S  + +L +  +         ++D +R++    +++   FI+G  GE     +  
Sbjct: 280 FVGIESPDNDVLTAARKHQNVRNP--LLDSLRAINANGLSVIGSFILGMDGEKAGAGQRM 337

Query: 351 MDLVDKIGYAQAFSFKYSPRLGT 373
               +                 T
Sbjct: 338 RAFAEAADLPWVMVNVLRALPLT 360


>gi|183220661|ref|YP_001838657.1| hypothetical protein LEPBI_I1270 [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
 gi|189910763|ref|YP_001962318.1| Fe-S oxidoreductase [Leptospira biflexa serovar Patoc strain 'Patoc
           1 (Ames)']
 gi|167775439|gb|ABZ93740.1| Fe-S oxidoreductase [Leptospira biflexa serovar Patoc strain 'Patoc
           1 (Ames)']
 gi|167779083|gb|ABZ97381.1| Hypothetical protein LEPBI_I1270 [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
          Length = 643

 Score = 60.3 bits (145), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 38/225 (16%), Positives = 77/225 (34%), Gaps = 15/225 (6%)

Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209
           V  ++ + D     +      N KR    +L    GC   CT+C  P +     +  + +
Sbjct: 173 VPANFPLTDFPSPYTTGHLQVNPKRST--YLETVRGCKSQCTYCFYPKSSQSLRTLDIKE 230

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSH 269
            +     L   G  E+  L    N          +  F   L +++E+    ++      
Sbjct: 231 TIHLISNLKGKGAKELVFLDPTFNH---------RPGFESFLDAIAEVNADGQMTMFAEL 281

Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329
             +     + A          + L +QS ++  LK + R  + ++  ++   +     D+
Sbjct: 282 RSEGVTPKL-ATKLRKAGFNRIELGLQSVNEETLKRVKRYGSPHKVAEVAKMLAGEGIDL 340

Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGY-AQAFSFKYSPRLGT 373
            +     +  PG+T DD    +    + G      +F  S   GT
Sbjct: 341 LLDLIIGL--PGDTPDDVERGIHFFLEHGLGEWVQAFPLSVLPGT 383


>gi|78185865|ref|YP_378299.1| Elongator protein 3/MiaB/NifB [Synechococcus sp. CC9902]
 gi|78170159|gb|ABB27256.1| Elongator protein 3/MiaB/NifB [Synechococcus sp. CC9902]
          Length = 465

 Score = 60.3 bits (145), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 51/260 (19%), Positives = 95/260 (36%), Gaps = 25/260 (9%)

Query: 174 RGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVN 233
                 + +   C + C FC+  Y      + SL   +  A +        + LLG +V 
Sbjct: 139 WPDIHMVEVVRSCPELCRFCLASYLTLPFRTPSLDDGLIPAVEKGLTATKRLGLLGASVT 198

Query: 234 AWRGKGLDGEKCTFSDLLYSLSEIKGL-VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLH 292
                        FSDLL  L + +    R+  ++     ++  L +           L 
Sbjct: 199 QH---------PQFSDLLQWLDQDRFDGTRISVSSVRAATVTPELTRIL--SKRGSRSLT 247

Query: 293 LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA-ISSDFIVGFPGETDDDFRATM 351
           + ++SGS+R+ + +N++ T           +     +  +    + G P ETDDD  AT 
Sbjct: 248 IAIESGSERMREVVNKKLTTEAIHAAARHAKE--GGLTGLKLYGMAGLPTETDDDIEATA 305

Query: 352 DLVDKIGYA------QAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSF 405
           +L+  +               + P+  TP         E  K  RL  L K+L+ + + F
Sbjct: 306 ELLLALKRDTKGLRFTLGVSTFVPKAQTP-FQWQGVRPEAEK--RLKRLAKRLKPKGIEF 362

Query: 406 NDACVG-QIIEVLIEKHGKE 424
                G  +I+ L+ +  + 
Sbjct: 363 RPESYGWSVIQALLSRSDRR 382


>gi|73748964|ref|YP_308203.1| radical SAM domain-containing protein [Dehalococcoides sp. CBDB1]
 gi|73660680|emb|CAI83287.1| radical SAM domain protein [Dehalococcoides sp. CBDB1]
          Length = 503

 Score = 60.3 bits (145), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 64/387 (16%), Positives = 135/387 (34%), Gaps = 43/387 (11%)

Query: 62  ADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRS 121
           AD + ++   +++K+A +    + R   L            VV  G    AE E +    
Sbjct: 66  ADYVFISAMAVQQKSAHEC---IDRCHALGKK---------VVAGGPYFTAEAETL---- 109

Query: 122 PIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAF-L 180
             ++ ++  +    L   +     GK         +    R  I      + +  ++  L
Sbjct: 110 KGIDHLLLGEVENSLAGFVRDLEEGKAAAVYPEKEKSDLTRTPIPLWKLVKSKEYSSMSL 169

Query: 181 TIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
               GC   C FC +    G    S+   QV+ E   L  +G         +        
Sbjct: 170 QYSRGCPFNCEFCDIVVLNGRVPRSKDRVQVLAELNALYQSGWRSGVFFVDD------NF 223

Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM----SDCLIKAHGDLDVLMPYLHLPV 295
           +  +    +D+L ++   +      ++ +    +     D L+     ++     + + V
Sbjct: 224 IGNKNKLKADILPAVIAWQKRKGYPFSFNTEVSINLADDDELLHLM--VEAGFDTVFVGV 281

Query: 296 QSGSDRILKSMNRRHTA-YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           ++ +   L   ++   A  +    I++I+     I +   FI+GF  +    FRA ++ +
Sbjct: 282 ETPNAESLAECSKHQNANRDMLVSIEKIQQA--GIQVQGGFILGFDSDPASIFRAQINFI 339

Query: 355 DKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLC-LQKKLREQQVSFNDACVGQI 413
            + G   A     +   GT   N L+      K +RLL   +    +  ++F      + 
Sbjct: 340 QQSGIVTAMVGLLNAPRGTRLWNRLK------KEKRLLEDFRGDNTDCSLNFVPRM--KT 391

Query: 414 IEVLIEKHGKEKGKLVGRSPWLQSVVL 440
            EVLI  + +    +     + Q V +
Sbjct: 392 -EVLINGYNRVLSAIYAPREYYQRVAV 417


>gi|147669731|ref|YP_001214549.1| radical SAM domain-containing protein [Dehalococcoides sp. BAV1]
 gi|289432961|ref|YP_003462834.1| radical SAM protein [Dehalococcoides sp. GT]
 gi|146270679|gb|ABQ17671.1| Radical SAM domain protein [Dehalococcoides sp. BAV1]
 gi|288946681|gb|ADC74378.1| Radical SAM domain protein [Dehalococcoides sp. GT]
          Length = 503

 Score = 60.3 bits (145), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 64/387 (16%), Positives = 135/387 (34%), Gaps = 43/387 (11%)

Query: 62  ADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRS 121
           AD + ++   +++K+A +    + R   L            VV  G    AE E +    
Sbjct: 66  ADYVFISAMAVQQKSAHEC---IDRCHALGKK---------VVAGGPYFTAEAETL---- 109

Query: 122 PIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAF-L 180
             ++ ++  +    L   +     GK         +    R  I      + +  ++  L
Sbjct: 110 KGIDHLLLGEVENSLAGFVRDLEEGKAAAVYPEKEKSDLTRTPIPLWKLVKSKEYSSMSL 169

Query: 181 TIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
               GC   C FC +    G    S+   QV+ E   L  +G         +        
Sbjct: 170 QYSRGCPFNCEFCDIVVLNGRVPRSKDRVQVLAELNALYQSGWRSGVFFVDD------NF 223

Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM----SDCLIKAHGDLDVLMPYLHLPV 295
           +  +    +D+L ++   +      ++ +    +     D L+     ++     + + V
Sbjct: 224 IGNKNKLKADILPAVIAWQKRKGYPFSFNTEVSINLADDDELLHLM--VEAGFDTVFVGV 281

Query: 296 QSGSDRILKSMNRRHTA-YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           ++ +   L   ++   A  +    I++I+     I +   FI+GF  +    FRA ++ +
Sbjct: 282 ETPNAESLAECSKHQNANRDMLVSIEKIQQA--GIQVQGGFILGFDSDPASIFRAQINFI 339

Query: 355 DKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLC-LQKKLREQQVSFNDACVGQI 413
            + G   A     +   GT   N L+      K +RLL   +    +  ++F      + 
Sbjct: 340 QQSGIVTAMVGLLNAPRGTRLWNRLK------KEKRLLEDFRGDNTDCSLNFVPRM--KT 391

Query: 414 IEVLIEKHGKEKGKLVGRSPWLQSVVL 440
            EVLI  + +    +     + Q V +
Sbjct: 392 -EVLINGYNRVLSAIYAPREYYQRVAV 417


>gi|218288639|ref|ZP_03492916.1| oxygen-independent coproporphyrinogen III oxidase [Alicyclobacillus
           acidocaldarius LAA1]
 gi|218241296|gb|EED08471.1| oxygen-independent coproporphyrinogen III oxidase [Alicyclobacillus
           acidocaldarius LAA1]
          Length = 388

 Score = 60.3 bits (145), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 34/205 (16%), Positives = 68/205 (33%), Gaps = 24/205 (11%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C   C +C            S + +      L+        L      A+ G    G   
Sbjct: 20  CKSRCFYCDFTTFVK-----SPAAMEAYVDALVAEWDLMEPLEAPLATAYFGG---GTPT 71

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDC---------LIKAHGDLDVLMPYLHLPVQ 296
             S  L  L  +   +R R+  S   +++            ++   D    +  +    Q
Sbjct: 72  LLSASL--LDRLLDAMRQRFDFSADAEITFESNPDSITREKLRVLRDHG--VNRISFGAQ 127

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSV-RPDIAISSDFIVGFPGETDDDFRATMDLVD 355
           +  D +L+++ R H      + +   R +  P + I  D + G P +T  D   +++ V 
Sbjct: 128 AFQDHLLQAIGRAHLRDAIEEAVWAARDLGFPHVNI--DLMFGLPDQTLHDVAESVEAVL 185

Query: 356 KIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++      ++      GTP +   E
Sbjct: 186 RLPVDHVSAYWLKIEPGTPFAKWHE 210


>gi|320160959|ref|YP_004174183.1| hypothetical protein ANT_15550 [Anaerolinea thermophila UNI-1]
 gi|319994812|dbj|BAJ63583.1| hypothetical protein ANT_15550 [Anaerolinea thermophila UNI-1]
          Length = 502

 Score = 60.3 bits (145), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 66/407 (16%), Positives = 145/407 (35%), Gaps = 47/407 (11%)

Query: 57  NSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEE 116
           + +  ADL +++   +++K+A +V      I+  K++  K      VV  G +   E E+
Sbjct: 64  DDIVWADLAMISAMVVQKKSAHEV------IQRCKDAGKK------VVAGGPLFLGEWEQ 111

Query: 117 ILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGV 176
                P V+  V  +    LP+ L+    G        +     +   +        +  
Sbjct: 112 F----PQVDHFVLNEGEITLPQFLKDFLSGNANRIYQTTSFANMQTSPVPRWELIDLKAY 167

Query: 177 TAF-LTIQEGCDKFCTFCVVPYTRG-IEISRSLSQVVDEARKLIDNG-VCEITLLGQNVN 233
            +  +    GC   C FC V    G    ++++ Q++ E  K+   G    I  +  N  
Sbjct: 168 DSLSIQYSRGCPFNCDFCNVTAMLGHRPRTKNVEQILAELDKMYQLGWRRNIFFVDDNFI 227

Query: 234 AWRGKGLDGEKCTFSDLLYSLSEIKGLVR-LRYTTSHPRD--MSDCLIKAHGDLDVLMPY 290
             R       K    ++L +L E +   +   + T    +      L++       +   
Sbjct: 228 GNR-------KQLKEEILPALIEWRKDKKGCHFITEASINLADDPELMELMRTAGFV--S 278

Query: 291 LHLPVQSGSDRILKSMNRRHT-AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           + + +++  +  L   N++     +    +  ++     + +   FIVGF  +  + F+ 
Sbjct: 279 VFVGIETPVEDSLSECNKKQNLKRDLLTAVQTLQKN--GLQVMGGFIVGFDHDPPNIFQK 336

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQ--QVSFND 407
            ++ + K G   A         GT     +E+ +  +  E              ++ FN 
Sbjct: 337 QIEFIQKSGIVTAMVGLLQAPYGTKLYERMEK-EGRIVKELSGDNTNGTTNIIPKMGFNA 395

Query: 408 ACVGQIIEVLIEKHGKEKGKLVG-------RS-PWLQSVVLNSKNHN 446
              G    VL+E+  K +G            + P ++ V ++++   
Sbjct: 396 LQAG--YHVLLEELYKPEGFYSRVKTFLENYTLPEVRPVQVHTEEIM 440


>gi|300087687|ref|YP_003758209.1| oxygen-independent coproporphyrinogen III oxidase [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
 gi|299527420|gb|ADJ25888.1| oxygen-independent coproporphyrinogen III oxidase [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
          Length = 380

 Score = 60.3 bits (145), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 47/212 (22%), Positives = 79/212 (37%), Gaps = 15/212 (7%)

Query: 186 CDKFCTFCVVPYTRGIEISRS--LSQVVDEARKLIDNG-VCEITLLGQNVNAWRGKGLDG 242
           C + C +C      G E      ++ +  E R    +G V      G    +  G  L G
Sbjct: 13  CRRRCRYCSFVTQAGREALIPEYVAALEAELRLRRRSGAVVRTIYFGGGTPSLAGAELIG 72

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
                  L+ ++++   +      T      +  +    G     +  L L  QS +DR 
Sbjct: 73  R------LVRAVADEYEIGPGAEITLETNPGTVEMAGFRGFRAAGINRLSLGAQSLADRE 126

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           L+ + R H+A    + ++  R    D  IS DFI G PG +  D+R  +  +  +G    
Sbjct: 127 LEYLGRTHSADRVGEAVEEARRAGFD-NISLDFIYGLPGRSPVDWRRMLADITTLGAEHL 185

Query: 363 FSFKYSPRLGTP-----GSNMLEQVDENVKAE 389
             +  S   GTP      +   E VD +  A+
Sbjct: 186 SFYGLSIDAGTPLAEAVAAGRDEPVDPDAAAD 217


>gi|262394997|ref|YP_003286851.1| lipoate synthase [Vibrio sp. Ex25]
 gi|262338591|gb|ACY52386.1| lipoate synthase [Vibrio sp. Ex25]
          Length = 321

 Score = 60.3 bits (145), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 27/182 (14%), Positives = 60/182 (32%), Gaps = 10/182 (5%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V    G  +     +    A+ + D  +  + +   +    R    DG   
Sbjct: 94  CTRRCPFCDV--AHGRPLPPEAEEPQKLAKTIADMKLKYVVITSVD----RDDLRDGGAQ 147

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
            F+D    +  +   +++       R   D  +    D     P +       + R+ + 
Sbjct: 148 HFADCNREIRALNPHIKIETLVPDFRGRMDVALDLMKDNP---PDVFNHNLETAPRLYRK 204

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
                      +++ + +   PD+   S  ++G  GET ++    +  +   G       
Sbjct: 205 ARPGANYKWSLELLKKFKEQHPDVPTKSGLMMGL-GETKEEIIEVLKDLRAHGVTMLTLG 263

Query: 366 KY 367
           +Y
Sbjct: 264 QY 265


>gi|227494156|ref|ZP_03924472.1| lipoyl synthase [Actinomyces coleocanis DSM 15436]
 gi|226831890|gb|EEH64273.1| lipoyl synthase [Actinomyces coleocanis DSM 15436]
          Length = 350

 Score = 60.3 bits (145), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 37/217 (17%), Positives = 72/217 (33%), Gaps = 20/217 (9%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC +    G        +    A  + + G+  +T+ G      R    DG   
Sbjct: 83  CTRRCAFCDI--ATGRPEGYDQDEPRRLAESVQELGLRYVTITGV----ARDDLPDGASW 136

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
            ++     +        +       +   + L +       +           +   L  
Sbjct: 137 LYAQSTREIHARMPGTGVELLVDDFKGDINALQEVFDSGPQV-----FAHNIETVPRLMK 191

Query: 306 MNRRHTAYEYRQIIDRIRSVR-PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
           + R   A+ Y + +  IR+ +   I   S+ I+G  GET ++   TM  + + G      
Sbjct: 192 IIRP--AFRYERSLAAIRAAKDAGIVTKSNLILGL-GETREEIEQTMRDLLEAGCDILTI 248

Query: 365 FKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQ 401
            +Y  R     S +   +D  VK +  + L+    E 
Sbjct: 249 TQYL-RP----SPLHHPIDRWVKPQEFIELRDLAYEL 280


>gi|303273222|ref|XP_003055972.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226462056|gb|EEH59348.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 484

 Score = 60.3 bits (145), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 38/212 (17%), Positives = 73/212 (34%), Gaps = 21/212 (9%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG------ 239
           C + C +C    +   +   +   V       ++    EI     +  + RG+       
Sbjct: 59  CRRRCYYCDFAVSVVGDAHETSDAVTRGMETYVETLSREIANT-PSAPSSRGRRRHHPPL 117

Query: 240 ---LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCL---------IKAHGDLDVL 287
                G           L  +   +R R+      ++S  +         ++++ +L   
Sbjct: 118 RTIFFGGGTPSLLPPALLRRVLDALRARFGIDADAEISMEMDPGTFDAAKLRSYAELG-- 175

Query: 288 MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDF 347
           +  + L VQS  D +L++  R HTA + R  I+ +R      A S D I G PG + + +
Sbjct: 176 VNRVSLGVQSFDDAVLRAAGRAHTAADARVAIETVRREARLRAWSLDLISGLPGLSLETW 235

Query: 348 RATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
             ++      G      +      GTP     
Sbjct: 236 EDSLREAVDAGVDHVSVYDLQVEEGTPFGRWY 267


>gi|134299997|ref|YP_001113493.1| biotin synthase [Desulfotomaculum reducens MI-1]
 gi|134052697|gb|ABO50668.1| iron-only hydrogenase maturation protein HydE [Desulfotomaculum
           reducens MI-1]
          Length = 354

 Score = 60.3 bits (145), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 30/202 (14%), Positives = 69/202 (34%), Gaps = 17/202 (8%)

Query: 175 GVTAFLTIQEGCDKFCTFCVVPYTRGI-EISR-SLSQVVDEARKLIDNGVCEITLLGQNV 232
            +   +     C   C +C +  +    E  R  + ++V+ A+     G   I L     
Sbjct: 55  HLRGIIEFSNYCRNDCHYCGLRRSNKDIERYRIPIEEIVETAKYAAQLGYGTIVLQSGED 114

Query: 233 NAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLH 292
           + + G+         ++++  + ++             R+  + + KA  D         
Sbjct: 115 SRYSGED-------LAEIIRQVKKVGNFAVTICVGERSREDYELMKKAGADR------YL 161

Query: 293 LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352
           L  ++    +   +    T  E  + +  ++ +     + S  IVG PG+T +     + 
Sbjct: 162 LKHETADSGLFTQLRPGTTLKERIKGLTWLKEL--GYQVGSGNIVGLPGQTMETLADDIL 219

Query: 353 LVDKIGYAQAFSFKYSPRLGTP 374
           L+  +    A    + P   TP
Sbjct: 220 LLRALDVEMAGIGPFIPHQQTP 241


>gi|220909383|ref|YP_002484694.1| Radical SAM domain-containing protein [Cyanothece sp. PCC 7425]
 gi|219865994|gb|ACL46333.1| Radical SAM domain protein [Cyanothece sp. PCC 7425]
          Length = 529

 Score = 60.3 bits (145), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 50/294 (17%), Positives = 103/294 (35%), Gaps = 33/294 (11%)

Query: 58  SMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEI 117
             + A+L++L+   +      +    L +I+  K    +      V V G    +   E 
Sbjct: 62  EWEWAELVILSGMIV------QKQDMLDQIQEAKRRGKR------VAVGGPYPTSLPAE- 108

Query: 118 LRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT 177
              +   + +V  +    LP  ++    G+R      + E      + +      +    
Sbjct: 109 -PEAAGADYLVLDEGEITLPLFVQALAAGERSGTFTANGEKPDVTHTPIPRYDLLELNAY 167

Query: 178 AFLTIQ--EGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVCEITLLGQNVNA 234
             ++IQ   GC   C FC +    G +  +++  QV+ E   L   G      +  +   
Sbjct: 168 DSMSIQFSRGCPFQCEFCDIIVLYGRKPRTKTPQQVLAELECLYQLGWRRSVFMVDD--- 224

Query: 235 WRGKGLDGEKCTFSDLLYSLS--EIKGLVRLRYTTSHPRDM--SDCLIKAHGDLDVLMPY 290
                  G K     LL  L   + +      + T    D+   + L+     +D     
Sbjct: 225 ----NFIGNKRNVKLLLKELKVWQQEHGYPFHFNTEASVDLAQDEELLDLM--VDCYFDA 278

Query: 291 LHLPVQSGSDRILKSMNR-RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGET 343
           + + +++  +  L    + ++T     + ID I      + + + FI+GF GET
Sbjct: 279 VFVGIETPDEASLALTKKYQNTRNSLTEAIDVITRK--GLRVMAGFIIGFDGET 330


>gi|293602518|ref|ZP_06684964.1| lipoic acid synthetase [Achromobacter piechaudii ATCC 43553]
 gi|292819280|gb|EFF78315.1| lipoic acid synthetase [Achromobacter piechaudii ATCC 43553]
          Length = 336

 Score = 60.3 bits (145), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 43/252 (17%), Positives = 89/252 (35%), Gaps = 23/252 (9%)

Query: 126 VVVGPQTYYRLPELL--ERARFGKRVVDT-----DYSVEDKFERLSIVDGGYNRKRGVTA 178
           + + P    + PE +  + A  G R  D      ++++    E  S  + G    +G   
Sbjct: 42  IKIVPAERLKKPEWIRVKAAAPGSRFYDIKRILREHNLHTVCEEASCPNIGECFGKGTAT 101

Query: 179 FLTIQEGCDKFCTFCVVPYTRGIEISRSLS--QVVDEARKLIDNGVCEITLLGQNVNAWR 236
           F+ + + C + C FC V + R       L   +  + AR +    +  + +   +    R
Sbjct: 102 FMIMGDKCTRRCPFCDVGHGRPD----PLDTKEPENLARTIAALKLSYVVITSVD----R 153

Query: 237 GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD-MSDCLIKAHGDLDVLMPYLHLPV 295
               DG    F D +  + E+    R+       R  +   L   +     +M +    V
Sbjct: 154 DDLRDGGAGHFVDCITHIRELSPTTRIEVLVPDFRGRLDRALTILNAGPPDVMNHNLETV 213

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
                R+ K            +++   + + P++   S  ++G  GETD++    M  + 
Sbjct: 214 ----PRLYKQARPGSDYMHSLKLLAEFKKLHPEVPTKSGLMLGL-GETDEEILQVMRDMR 268

Query: 356 KIGYAQAFSFKY 367
           +         +Y
Sbjct: 269 EHNVDMLTIGQY 280


>gi|317485140|ref|ZP_07944022.1| radical SAM superfamily protein [Bilophila wadsworthia 3_1_6]
 gi|316923675|gb|EFV44879.1| radical SAM superfamily protein [Bilophila wadsworthia 3_1_6]
          Length = 318

 Score = 60.3 bits (145), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 30/202 (14%), Positives = 71/202 (35%), Gaps = 20/202 (9%)

Query: 176 VTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ--VVDEARKLIDNGVCEITLLGQNVN 233
           V   +     C++ C +C +           L +  +V+ A + +  GV  + L    V+
Sbjct: 36  VRGLIEFSNRCERNCRYCGLRSANPSLKRYRLDEVQIVEAAERAVAFGVDTLVLQSGEVH 95

Query: 234 AWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGD-LDVLMPYLH 292
                          D    ++ +   +R R+  +    + +    ++    +       
Sbjct: 96  ---------------DEPQRIAHVVDALRTRFPVAVTLSVGEQPTASYALWKEAGASRFL 140

Query: 293 LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352
           L  ++    +  +++  +T  +    + R+R       I S FIVG PG+  +     + 
Sbjct: 141 LKHETADASLYAALHPGYTLAQRVDALQRLRRA--GYEIGSGFIVGVPGQRPETLADDIL 198

Query: 353 LVDKIGYAQAFSFKYSPRLGTP 374
           L  ++      +  + P+  TP
Sbjct: 199 LARELHVDMCGAGPFIPQADTP 220


>gi|261880419|ref|ZP_06006846.1| coproporphyrinogen dehydrogenase [Prevotella bergensis DSM 17361]
 gi|270332887|gb|EFA43673.1| coproporphyrinogen dehydrogenase [Prevotella bergensis DSM 17361]
          Length = 326

 Score = 60.3 bits (145), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 33/126 (26%), Positives = 55/126 (43%), Gaps = 8/126 (6%)

Query: 288 MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA-ISSDFIVGFPGETDDD 346
           +  + + VQS SD  LK ++RRHTA E  +    +R     I  IS D + GFP ET  D
Sbjct: 66  VNRVSMGVQSFSDSRLKFLHRRHTASEADRAFGMLREQ--GITNISIDLMFGFPEETLSD 123

Query: 347 FRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ-----VDENVKAERLLCLQKKLREQ 401
           + + ++   K+      ++      GTP   +L+Q     ++E +       L  +L   
Sbjct: 124 WESDIEHALKLAPEHISAYGLMYEEGTPLYQLLKQGKVGEINEELSLAMYDALIDRLTMA 183

Query: 402 QVSFND 407
                +
Sbjct: 184 GYEHYE 189


>gi|87125034|ref|ZP_01080881.1| hypothetical protein RS9917_03493 [Synechococcus sp. RS9917]
 gi|86167354|gb|EAQ68614.1| hypothetical protein RS9917_03493 [Synechococcus sp. RS9917]
          Length = 526

 Score = 60.3 bits (145), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 49/289 (16%), Positives = 91/289 (31%), Gaps = 41/289 (14%)

Query: 97  EGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV-DTDYS 155
                 VV+ G       E++ R  P   +V    +      LLE+   G+ +  +  Y 
Sbjct: 140 HHPAARVVLGGGAVSVFYEQLGRSLPRGTIV----SLGEGEPLLEKLLRGEAITSERCYV 195

Query: 156 VEDKFERLSIVDGGYNRKRGVTAFLTIQE----------------------GCDKFCTFC 193
           V +      I +   +R +    +  I                        GC   C +C
Sbjct: 196 VGETPRPGLIHEQPESRPKTACDYDYIARIWPQLDWYLEGGDFYVGVQTKRGCPHNCCYC 255

Query: 194 VVPYTRGIEISR-SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLY 252
           V     G ++    + +VV E R+L D GV             R    D +      LL 
Sbjct: 256 VYTVVEGKQVRLNPVEEVVKEMRQLYDRGVRGFWFTDAQFIPARRYIEDAKT-----LLQ 310

Query: 253 SLSEIKGLVRLRY-TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
           ++ + +GL  +R+       ++   L +        M Y  + + SGS  +++ M   + 
Sbjct: 311 AI-QAEGLEGIRWAAYIRADNLDAELAELMVATG--MSYFEIGITSGSQELVRKMRMGYN 367

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPG--ETDDDFRATMDLVDKIG 358
                +    + +              F    E  D  R T+    ++ 
Sbjct: 368 LRTVLESCRMLAAA--GFRDHVSVNYSFNVIDERPDTIRQTVAYQRELE 414


>gi|307717915|ref|YP_003873447.1| radical SAM protein [Spirochaeta thermophila DSM 6192]
 gi|306531640|gb|ADN01174.1| radical SAM protein [Spirochaeta thermophila DSM 6192]
          Length = 318

 Score = 60.3 bits (145), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 44/258 (17%), Positives = 85/258 (32%), Gaps = 23/258 (8%)

Query: 164 SIVDGGYNRKRGVTAFLTIQEG--CDKF-------CTFCVVPYTRGIEIS--RSLSQVVD 212
           S       R  G+   + +  G  C          C FC V  +R   +   R L + V 
Sbjct: 12  SFSRYLKERFGGMVYRVGVDAGFSCPHRDSREGRGCAFCDVEGSRAPYLGDVRGLEEQVR 71

Query: 213 EARKLIDN--GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270
            A+  +    G     L  Q      G   +  +   +     L+  +G       ++ P
Sbjct: 72  RAKGFLKARYGASRFLLYFQAYTNTYGPVEELRRVYEA----GLAADEGEWVGLIVSTRP 127

Query: 271 RDMSDCLIKAHGDLDV--LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
             + D ++          L  ++ L +QS  D  L+ + R HT  ++   +   R+    
Sbjct: 128 DCLPDEVLDLLASYKARGLEVWVELGLQSAFDETLRRIRRGHTVAQWEDAVR--RAGEAG 185

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN--MLEQVDENV 386
           +  ++  I G PGE  ++F  +   V + G            +G P     +  ++    
Sbjct: 186 LLRAAHLIAGLPGEGREEFWESARFVAESGVEGIKFHDLHLPVGAPLFREYLRGELSLLS 245

Query: 387 KAERLLCLQKKLREQQVS 404
           +   L  +   L   +  
Sbjct: 246 RERYLDYVMGALERIRPE 263


>gi|299769318|ref|YP_003731344.1| lipoyl synthase [Acinetobacter sp. DR1]
 gi|298699406|gb|ADI89971.1| lipoyl synthase [Acinetobacter sp. DR1]
          Length = 337

 Score = 60.3 bits (145), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 64/208 (30%), Gaps = 12/208 (5%)

Query: 161 ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN 220
           E  +  +       G   F+ + + C + C FC V    G   +    +    A  + + 
Sbjct: 66  EEAACPNLPECFGGGTATFMIMGDICTRRCPFCDV--AHGRPNALDADEPRHMAETIANL 123

Query: 221 GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKA 280
            +    +   +    R   LDG    F D +     +     L       R   D  ++ 
Sbjct: 124 KLKYAVITSVD----RDDLLDGGAQHFVDCIKEARALSPTTLLEILVPDFRGRMDIALRI 179

Query: 281 HGDLDVLMPYLHLPVQSGSDRIL-KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGF 339
             +     P         +   L K+M           ++   +   PDI      +VG 
Sbjct: 180 MTE----CPPDVFNHNIETVPRLYKAMRPGSDYQHSLTLLKMFKEYCPDIPTKCGLMVGI 235

Query: 340 PGETDDDFRATMDLVDKIGYAQAFSFKY 367
            GET+++  A +D +           +Y
Sbjct: 236 -GETEEEVIALLDDLRAHDVDYVTIGQY 262


>gi|291566727|dbj|BAI88999.1| radical SAM domain protein [Arthrospira platensis NIES-39]
          Length = 526

 Score = 60.3 bits (145), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 38/234 (16%), Positives = 74/234 (31%), Gaps = 15/234 (6%)

Query: 127 VVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGC 186
           VVG           +     K   + DY  E   E        Y +       +  + GC
Sbjct: 191 VVGQTQPRDRMIHEKPTNIEKTACNYDYISEVWPEF-----DYYFQDGDFYIGVQTKRGC 245

Query: 187 DKFCTFCVVPYTRGIEISR-SLSQVVDEARKLIDNGVCEITLL-GQNVNAWRGKGLDGEK 244
              C +CV     G ++      +VV E ++L   G+        Q + A R        
Sbjct: 246 PHNCCYCVYTVIEGKQVRINPADEVVAEMKQLYHRGIRNFWFTDAQFIPARRFID----- 300

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304
               +LL  + +               +++  L          M Y  + + SGS  +++
Sbjct: 301 -DAVELLQKILDAGMNDINWAAYIRADNLTPQLCDLMVKTG--MNYFEIGITSGSQELVR 357

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
            M   +      +    +++   +  +S ++      ET D  R T+    ++ 
Sbjct: 358 KMRMGYNLRVVLENCRDLKAAGFNDLVSVNYSFNVIDETLDTIRQTIAYHRELE 411


>gi|261415522|ref|YP_003249205.1| Radical SAM domain protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261371978|gb|ACX74723.1| Radical SAM domain protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 739

 Score = 60.3 bits (145), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 55/305 (18%), Positives = 94/305 (30%), Gaps = 61/305 (20%)

Query: 132 TYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT--------AFLTI- 182
             +    +L+       V++  Y   +  E     +  Y R+            AF  I 
Sbjct: 245 NKWFQHRILQDVAEQTVVINPAYPPMEYGELDESFEYPYAREPHPRYKKRGNIPAFDMIK 304

Query: 183 -----QEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDNGVCEITLL---GQNVN 233
                  GC   C+FC +   +G  I SRS   ++ E   + +      T+    G + N
Sbjct: 305 FSINTHRGCFGGCSFCAINAHQGKFIASRSRESILREVEIVTNMEGFAGTITDLGGPSAN 364

Query: 234 AWRGKGLDGEKCTFSDLLYSL------------SEIKGLVR----------------LRY 265
            +  +G D  +C        L            +EI  L R                +RY
Sbjct: 365 MYNMRGRDPSRCQKCARASCLTPKICDNMDTHHAEILSLYREVRNHPKVKHLFIGSGVRY 424

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLH------LPVQSGSDRILKSMNRR-----HT-AY 313
                    + L K H +    +   H      +  +  SD +LK M +      H    
Sbjct: 425 DMLLQETDDEELRKDHEEYARELIDYHVSGRLKVAPEHTSDAVLKLMRKPSFTLFHKFKE 484

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
            +     RI   +    +   FI   PG T+ D         ++G+       ++P   T
Sbjct: 485 FFDDECKRIGKKQ---QLIPYFISSHPGCTEADMAELALETKQLGFQLEQVQDFTPTPMT 541

Query: 374 PGSNM 378
             + M
Sbjct: 542 IATEM 546


>gi|254489521|ref|ZP_05102724.1| Fe-S protein, radical SAM family [Roseobacter sp. GAI101]
 gi|214042028|gb|EEB82668.1| Fe-S protein, radical SAM family [Roseobacter sp. GAI101]
          Length = 472

 Score = 60.3 bits (145), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 77/232 (33%), Gaps = 19/232 (8%)

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAF-LTIQEGCDKFCTFC-VVPYTRGIEISR 205
           ++VD +   E  ++ L +         G       I  GC   C FC VV    G   + 
Sbjct: 139 KLVDINSLPEFPYKALDMEFYMRPTFLGSRTIGHHISLGCPFKCGFCGVVSMVNGKTSAE 198

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           +         +L++         G N   +        +         ++  K       
Sbjct: 199 TPDLGARGVARLVEE-------YGANAIEFHDNNFFLGEARTKSFCDQIAHHKIKWWAYG 251

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH--TAYEYRQIIDRIR 323
                   S+    +       +  +++  ++GSD  LK MN+    T     Q+ + +R
Sbjct: 252 RGDTLLKYSEETWASMAASG--LKMVYIGAETGSDATLKKMNKGGKQTVNGILQLAETMR 309

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY----AQAFSFKYSPRL 371
               DI     FI+G P +   D   T++ + KI      ++   + Y+P  
Sbjct: 310 KF--DIVPEFSFIIGNPPDPVTDMDETLEFIKKIKVMNPGSEIILYSYTPVP 359


>gi|160934421|ref|ZP_02081808.1| hypothetical protein CLOLEP_03294 [Clostridium leptum DSM 753]
 gi|156867094|gb|EDO60466.1| hypothetical protein CLOLEP_03294 [Clostridium leptum DSM 753]
          Length = 329

 Score = 60.3 bits (145), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 35/208 (16%), Positives = 63/208 (30%), Gaps = 14/208 (6%)

Query: 178 AFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ---VVDEARKLI--DNGVCEITLLGQNV 232
           AF     GC   C+FC      G        +   V+++AR+ +       EI   G + 
Sbjct: 2   AFFIPHAGCPHQCSFCDQKSITGESRRVEPGEVAAVLEDARQALRGKQKASEIAFFGGSF 61

Query: 233 NAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLH 292
            A        ++         +    G       ++ P  +   +++        +  + 
Sbjct: 62  TAV---PPAYQESLLKAAYPFVKR--GDFSGIRISTRPDAIDPPVLERLKQYG--VKSIE 114

Query: 293 LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352
           L  QS  DR+L    R HTA +       IR      ++    + G  G + +    T  
Sbjct: 115 LGAQSMDDRVLVLNQRGHTAQDVVNASRMIREY--GFSLGLQMMTGLYGSSPESDWQTGK 172

Query: 353 LVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
            +          +      GT      E
Sbjct: 173 KLVLCKPDCVRIYPTVVLKGTKLGEYYE 200


>gi|61657531|emb|CAI44442.1| hypothetical protein [Thermotoga sp. RQ2]
          Length = 276

 Score = 60.3 bits (145), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 46/262 (17%), Positives = 85/262 (32%), Gaps = 29/262 (11%)

Query: 54  ERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAE 113
           E      +  ++  +          +       ++ LK           ++  G    A+
Sbjct: 38  EIKKFPPEKTIVAYSFMSFDLDTVRE------EVKALKEQ------GYTLIAGGPHVTAD 85

Query: 114 GEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRK 173
            E  L R    +V  G         +L      ++ +    S              +   
Sbjct: 86  PEGCL-RMGFDHVFTG----DGEENILRFLMGERKKIFDGISKRVNLNHYPP----FLPS 136

Query: 174 RGVTAFLTIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVCEITLLGQN- 231
           +G+   + I  GC   C +C  P   G +   R +  VV  A+  + +G      +  N 
Sbjct: 137 KGIYMPIEITRGCPFSCAYCQTPIIAGRQVRHRDVDVVVHYAKLGVKHGRKLARFIAPNS 196

Query: 232 VNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT----SHPRDMSDCLIKAHGDLDVL 287
                  G+        +LLY L  + G+  + + T      P  ++D ++K        
Sbjct: 197 FGYGSKNGVTPNVEKIEELLYGLKRV-GIEEIYFGTFPSEVRPESVTDEVLKVVKKYVN- 254

Query: 288 MPYLHLPVQSGSDRILKSMNRR 309
              + +  QSGSDRILK + R 
Sbjct: 255 NRSIVIGAQSGSDRILKIIKRG 276


>gi|51594379|ref|YP_068570.1| coproporphyrinogen III oxidase [Yersinia pseudotuberculosis IP
           32953]
 gi|108809512|ref|YP_653428.1| coproporphyrinogen III oxidase [Yersinia pestis Antiqua]
 gi|108810414|ref|YP_646181.1| coproporphyrinogen III oxidase [Yersinia pestis Nepal516]
 gi|145601123|ref|YP_001165199.1| coproporphyrinogen III oxidase [Yersinia pestis Pestoides F]
 gi|150260915|ref|ZP_01917643.1| oxygen-independent coproporphyrinogen III oxidase [Yersinia pestis
           CA88-4125]
 gi|153950356|ref|YP_001399025.1| coproporphyrinogen III oxidase [Yersinia pseudotuberculosis IP
           31758]
 gi|161484735|ref|NP_671101.2| coproporphyrinogen III oxidase [Yersinia pestis KIM 10]
 gi|161511483|ref|NP_991426.2| coproporphyrinogen III oxidase [Yersinia pestis biovar Microtus
           str. 91001]
 gi|162421654|ref|YP_001604667.1| coproporphyrinogen III oxidase [Yersinia pestis Angola]
 gi|165926183|ref|ZP_02222015.1| oxygen-independent coproporphyrinogen III oxidase [Yersinia pestis
           biovar Orientalis str. F1991016]
 gi|165940226|ref|ZP_02228756.1| oxygen-independent coproporphyrinogen III oxidase [Yersinia pestis
           biovar Orientalis str. IP275]
 gi|166011477|ref|ZP_02232375.1| oxygen-independent coproporphyrinogen III oxidase [Yersinia pestis
           biovar Antiqua str. E1979001]
 gi|166213708|ref|ZP_02239743.1| oxygen-independent coproporphyrinogen III oxidase [Yersinia pestis
           biovar Antiqua str. B42003004]
 gi|167402108|ref|ZP_02307585.1| oxygen-independent coproporphyrinogen III oxidase [Yersinia pestis
           biovar Antiqua str. UG05-0454]
 gi|167418791|ref|ZP_02310544.1| oxygen-independent coproporphyrinogen III oxidase [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|167427043|ref|ZP_02318796.1| oxygen-independent coproporphyrinogen III oxidase [Yersinia pestis
           biovar Mediaevalis str. K1973002]
 gi|167470513|ref|ZP_02335217.1| oxygen-independent coproporphyrinogen III oxidase [Yersinia pestis
           FV-1]
 gi|170026399|ref|YP_001722904.1| coproporphyrinogen III oxidase [Yersinia pseudotuberculosis YPIII]
 gi|186893366|ref|YP_001870478.1| coproporphyrinogen III oxidase [Yersinia pseudotuberculosis PB1/+]
 gi|218927242|ref|YP_002345117.1| coproporphyrinogen III oxidase [Yersinia pestis CO92]
 gi|229836130|ref|ZP_04456298.1| coproporphyrinogen III oxidase, SAM and NAD(P)H dependent,
           oxygen-independent [Yersinia pestis Pestoides A]
 gi|229841951|ref|ZP_04462106.1| coproporphyrinogen III oxidase, SAM and NAD(P)H dependent,
           oxygen-independent [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229900596|ref|ZP_04515720.1| coproporphyrinogen III oxidase, SAM and NAD(P)H dependent,
           oxygen-independent [Yersinia pestis Nepal516]
 gi|294502130|ref|YP_003566192.1| coproporphyrinogen III oxidase [Yersinia pestis Z176003]
 gi|51587661|emb|CAH19261.1| oxygen-independent coproporphyrinogen III oxidase [Yersinia
           pseudotuberculosis IP 32953]
 gi|108774062|gb|ABG16581.1| coproporphyrinogen III oxidase, anaerobic [Yersinia pestis
           Nepal516]
 gi|108781425|gb|ABG15483.1| coproporphyrinogen III oxidase, anaerobic [Yersinia pestis Antiqua]
 gi|115345853|emb|CAL18711.1| oxygen-independent coproporphyrinogen III oxidase [Yersinia pestis
           CO92]
 gi|145212819|gb|ABP42226.1| coproporphyrinogen III oxidase, anaerobic [Yersinia pestis
           Pestoides F]
 gi|149290323|gb|EDM40400.1| oxygen-independent coproporphyrinogen III oxidase [Yersinia pestis
           CA88-4125]
 gi|152961851|gb|ABS49312.1| oxygen-independent coproporphyrinogen III oxidase [Yersinia
           pseudotuberculosis IP 31758]
 gi|162354469|gb|ABX88417.1| oxygen-independent coproporphyrinogen III oxidase [Yersinia pestis
           Angola]
 gi|165911858|gb|EDR30505.1| oxygen-independent coproporphyrinogen III oxidase [Yersinia pestis
           biovar Orientalis str. IP275]
 gi|165922043|gb|EDR39220.1| oxygen-independent coproporphyrinogen III oxidase [Yersinia pestis
           biovar Orientalis str. F1991016]
 gi|165989623|gb|EDR41924.1| oxygen-independent coproporphyrinogen III oxidase [Yersinia pestis
           biovar Antiqua str. E1979001]
 gi|166205110|gb|EDR49590.1| oxygen-independent coproporphyrinogen III oxidase [Yersinia pestis
           biovar Antiqua str. B42003004]
 gi|166962785|gb|EDR58806.1| oxygen-independent coproporphyrinogen III oxidase [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|167048483|gb|EDR59891.1| oxygen-independent coproporphyrinogen III oxidase [Yersinia pestis
           biovar Antiqua str. UG05-0454]
 gi|167053970|gb|EDR63801.1| oxygen-independent coproporphyrinogen III oxidase [Yersinia pestis
           biovar Mediaevalis str. K1973002]
 gi|169752933|gb|ACA70451.1| oxygen-independent coproporphyrinogen III oxidase [Yersinia
           pseudotuberculosis YPIII]
 gi|186696392|gb|ACC87021.1| oxygen-independent coproporphyrinogen III oxidase [Yersinia
           pseudotuberculosis PB1/+]
 gi|229681935|gb|EEO78027.1| coproporphyrinogen III oxidase, SAM and NAD(P)H dependent,
           oxygen-independent [Yersinia pestis Nepal516]
 gi|229690261|gb|EEO82315.1| coproporphyrinogen III oxidase, SAM and NAD(P)H dependent,
           oxygen-independent [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229706578|gb|EEO92584.1| coproporphyrinogen III oxidase, SAM and NAD(P)H dependent,
           oxygen-independent [Yersinia pestis Pestoides A]
 gi|262360208|gb|ACY56929.1| coproporphyrinogen III oxidase [Yersinia pestis D106004]
 gi|262364155|gb|ACY60712.1| coproporphyrinogen III oxidase [Yersinia pestis D182038]
 gi|294352589|gb|ADE62930.1| coproporphyrinogen III oxidase [Yersinia pestis Z176003]
          Length = 457

 Score = 60.3 bits (145), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 38/247 (15%), Positives = 85/247 (34%), Gaps = 18/247 (7%)

Query: 173 KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS-------QVVDEARKLIDNGVCEI 225
           +R ++ ++ I   C K C FC        +  ++         ++   A       V ++
Sbjct: 50  QRPLSLYVHIPF-CHKLCYFCGCNKLVTRQQHKADEYLVVLEKEIRQRAALFTGRQVSQM 108

Query: 226 TLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLD 285
              G          +        +    L + +  + +      PR++   ++       
Sbjct: 109 HWGGGTPTYLNKTQISHLMTVLREHFDFLPDAEQSIEV-----DPREIELDVLDHLRAEG 163

Query: 286 VLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDD 345
                L + VQ  +  + + +NR         +I R +++  + + + D I G P +T +
Sbjct: 164 --FNRLSMGVQDFNKEVQRLVNREQDEDFIFALIARAKALGFN-STNIDLIYGLPKQTPE 220

Query: 346 DFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVS 404
            F  T+  V ++   +   F Y+       +   ++  D     +RL  LQ  +R    S
Sbjct: 221 SFAFTLKRVAELNPDRLSVFNYAHLPSLFAAQRKIKDADLPTAEQRLDILQHTIRFLTES 280

Query: 405 FNDACVG 411
                +G
Sbjct: 281 GYQ-FIG 286


>gi|153006037|ref|YP_001380362.1| radical SAM domain-containing protein [Anaeromyxobacter sp.
           Fw109-5]
 gi|152029610|gb|ABS27378.1| Radical SAM domain protein [Anaeromyxobacter sp. Fw109-5]
          Length = 534

 Score = 60.3 bits (145), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 41/238 (17%), Positives = 79/238 (33%), Gaps = 20/238 (8%)

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE-ISRSLSQ 209
           + D   + +  R+   D     + G  A L    GC   C FC +    G     ++  Q
Sbjct: 145 EGDERPDLRLARVPRFDLLELSRYGSHA-LQFSRGCPFRCEFCDIIELFGRVPRVKTPEQ 203

Query: 210 VVDEARKLIDNGVC-EITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
           ++ E   L+  G    +  +  N          G +   + LL +L   +   R  +   
Sbjct: 204 ILAELDALLALGARGTLFFVDDNFV--------GNRRAVASLLPALRAWQ--ERNEFPFV 253

Query: 269 HPRDMSDCLIK----AHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT-AYEYRQIIDRIR 323
              + S  L          +D     + L +++ S   L    +         + ++ + 
Sbjct: 254 FCTEASVDLAMHPELVTAMVDAGFGQVFLGLETPSRAALAEAGKTQNLRMPQERAVEELT 313

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
                + + + FI+GF  +  D F   +  +  +  A+A         GT     LEQ
Sbjct: 314 RA--GLEVYAGFIIGFDSDGPDIFDRQLAFISNLPIARAMVNVLIALPGTRLWRRLEQ 369


>gi|21960794|gb|AAM87352.1|AE013983_5 O2-independent coproporphyrinogen III oxidase [Yersinia pestis KIM
           10]
 gi|45434742|gb|AAS60303.1| oxygen-independent coproporphyrinogen III oxidase [Yersinia pestis
           biovar Microtus str. 91001]
          Length = 459

 Score = 60.3 bits (145), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 38/247 (15%), Positives = 85/247 (34%), Gaps = 18/247 (7%)

Query: 173 KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS-------QVVDEARKLIDNGVCEI 225
           +R ++ ++ I   C K C FC        +  ++         ++   A       V ++
Sbjct: 52  QRPLSLYVHIPF-CHKLCYFCGCNKLVTRQQHKADEYLVVLEKEIRQRAALFTGRQVSQM 110

Query: 226 TLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLD 285
              G          +        +    L + +  + +      PR++   ++       
Sbjct: 111 HWGGGTPTYLNKTQISHLMTVLREHFDFLPDAEQSIEV-----DPREIELDVLDHLRAEG 165

Query: 286 VLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDD 345
                L + VQ  +  + + +NR         +I R +++  + + + D I G P +T +
Sbjct: 166 --FNRLSMGVQDFNKEVQRLVNREQDEDFIFALIARAKALGFN-STNIDLIYGLPKQTPE 222

Query: 346 DFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVS 404
            F  T+  V ++   +   F Y+       +   ++  D     +RL  LQ  +R    S
Sbjct: 223 SFAFTLKRVAELNPDRLSVFNYAHLPSLFAAQRKIKDADLPTAEQRLDILQHTIRFLTES 282

Query: 405 FNDACVG 411
                +G
Sbjct: 283 GYQ-FIG 288


>gi|325262639|ref|ZP_08129376.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Clostridium sp. D5]
 gi|324032471|gb|EGB93749.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Clostridium sp. D5]
          Length = 395

 Score = 60.0 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 31/207 (14%), Positives = 68/207 (32%), Gaps = 19/207 (9%)

Query: 186 CDKFCTFCVVPYTRGIEISRS--LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
           C + C +C        E +R   +  ++ E +   +       +              G 
Sbjct: 14  CVRKCAYCDFLSAPADEAARQEYVDALLMEIQGYKETYYVPYRVTTV---------FIGG 64

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY-------LHLPVQ 296
                     ++EI   +   +  +   +++  +       + L  +       L + +Q
Sbjct: 65  GTPSLLTAKQITEIFAALHQSFRLADTAEITIEVNPGTITEEKLRSWKAAGINRLSIGLQ 124

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
           S  +  LK + R HT  E+ +     R    +  I+ D I   PG+T+  +  T+    +
Sbjct: 125 SADNEELKMLGRIHTWEEFMETYTLAREKGFE-NINIDLISAIPGQTEASWENTLTRAAR 183

Query: 357 IGYAQAFSFKYSPRLGTPGSNMLEQVD 383
           +      ++      GTP      + D
Sbjct: 184 LDPEHISAYSLIVEEGTPFYERYGEPD 210


>gi|290969184|ref|ZP_06560709.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Megasphaera genomosp. type_1 str. 28L]
 gi|290780690|gb|EFD93293.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Megasphaera genomosp. type_1 str. 28L]
          Length = 372

 Score = 60.0 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 34/195 (17%), Positives = 68/195 (34%), Gaps = 17/195 (8%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C   C +C  P   G         V       ++    E++    +  A       G   
Sbjct: 11  CTGKCRYCDFPSYSG---------VSSYYEAYVEAVCRELSAYTGDTRADTVYFGGGTPS 61

Query: 246 TF--SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLM---PYLHLPVQSGSD 300
               + L   L  ++ +  L   T    + +   ++              + L VQ+  D
Sbjct: 62  VLPTALLEKLLHTVQQVFSLAPATEITAEANPESLRREQCEKWAALGINRVSLGVQTFHD 121

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIA-ISSDFIVGFPGETDDDFRATMDLVDKIGY 359
            +L+S+ R HTA +  + +  + +    I  IS D + G PG+T   F+  +  + ++  
Sbjct: 122 ALLQSLGRLHTAAQAYEALQAVAAA--GITNISLDLMYGLPGQTLQAFKEDIQTLSRLPV 179

Query: 360 AQAFSFKYSPRLGTP 374
                ++ +    TP
Sbjct: 180 THVSIYRLTVEEHTP 194


>gi|257784602|ref|YP_003179819.1| oxygen-independent coproporphyrinogen III oxidase [Atopobium
           parvulum DSM 20469]
 gi|257473109|gb|ACV51228.1| oxygen-independent coproporphyrinogen III oxidase [Atopobium
           parvulum DSM 20469]
          Length = 415

 Score = 60.0 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 38/227 (16%), Positives = 79/227 (34%), Gaps = 10/227 (4%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C +C        +    + + V+  +  +D       L         G        
Sbjct: 23  CSQKCFYCDFSSWSTRQDDSRMKKYVNALKHQLDEAAQLGILATTKTVYMGGGTPSLLDQ 82

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
              DL +  S I   +      ++P  +SD L+ +       +  + L VQS +D  LK 
Sbjct: 83  GAVDLAHHTSSITHPIEFSME-ANPDSLSDELLASLSAGG--VTRISLGVQSFNDNELKE 139

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           + R H+A      +  + +      +S D +   P +T+  +  T+     +G      +
Sbjct: 140 LGRIHSADLAYDRV--LAAKESGYEVSVDLMCAIPEQTESSWEYTLSRFISLGVNHVSVY 197

Query: 366 KYSPRLGTPGSN--MLEQVDE---NVKAERLLCLQKKLREQQVSFND 407
             +   GT  +     + +     +V+A+R+    K L+       +
Sbjct: 198 PLTIEDGTALAKQTQDKDIPWNVYDVQADRMQTASKMLQAAGFERYE 244


>gi|115373518|ref|ZP_01460815.1| radical SAM domain protein, putative [Stigmatella aurantiaca
           DW4/3-1]
 gi|115369524|gb|EAU68462.1| radical SAM domain protein, putative [Stigmatella aurantiaca
           DW4/3-1]
          Length = 441

 Score = 60.0 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 41/197 (20%), Positives = 64/197 (32%), Gaps = 21/197 (10%)

Query: 182 IQEGCDKFCTFCVVPYTRGIEIS--RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
            Q GC   CTFC    +     +    + ++ +E       G  EI +L           
Sbjct: 199 TQRGCPYRCTFCQHRESGARLRNTRFPMQRLREEIALFARAGTQEIDVLD---------- 248

Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
                  F+     L  ++ LVR R            L+K   +   L   L++  + G 
Sbjct: 249 -----PIFNLGQEPLLVLEELVRQRIQARISLQCRFELLKP--EFLELCTQLNVFPEFGL 301

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRS--VRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
             I     R          ++       R  IA     I G PG+T + F AT++   K 
Sbjct: 302 QTIHTEEGRLVQRQNDMTRVETAMGELARRGIAYMVTLIYGLPGQTLESFHATVEFCLKR 361

Query: 358 GYAQAFSFKYSPRLGTP 374
           G     +F  +   GT 
Sbjct: 362 GVHVVRAFPLNLLRGTE 378


>gi|83589446|ref|YP_429455.1| coproporphyrinogen III oxidase, anaerobic [Moorella thermoacetica
           ATCC 39073]
 gi|83572360|gb|ABC18912.1| coproporphyrinogen III oxidase, anaerobic [Moorella thermoacetica
           ATCC 39073]
          Length = 388

 Score = 60.0 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 38/202 (18%), Positives = 69/202 (34%), Gaps = 19/202 (9%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLS--QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
           C + C +C         IS      +V+    +L++  +       Q   A       G 
Sbjct: 23  CVRKCNYC-------DFISYPEQSPEVMAVYCRLLEEEMKLAAGTWQPGPAATVFLGGGT 75

Query: 244 KCTF--SDLLYSLSEIKGLVRLRYTTSHPRD-----MSDCLIKAHGDLDVLMPYLHLPVQ 296
                   L   L  ++G    +       +     ++   ++        +  L L VQ
Sbjct: 76  PTILPADLLERILVAVEGYFNRQPEAEVSVEANPGTITLEKLRVLRSAG--VNRLSLGVQ 133

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
           S  DR+LK+M R H   +  Q     R       I+ D I G PG+T ++++AT+     
Sbjct: 134 SFDDRLLKAMGRIHRRRDIYQAYHLARRA-GFANINLDLIFGLPGQTLENWQATLREALA 192

Query: 357 IGYAQAFSFKYSPRLGTPGSNM 378
           +      ++       TP   +
Sbjct: 193 LQPEHLAAYSLQVEEDTPWGRL 214


>gi|332701625|ref|ZP_08421713.1| oxygen-independent coproporphyrinogen III oxidase [Desulfovibrio
           africanus str. Walvis Bay]
 gi|332551774|gb|EGJ48818.1| oxygen-independent coproporphyrinogen III oxidase [Desulfovibrio
           africanus str. Walvis Bay]
          Length = 464

 Score = 60.0 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 69/198 (34%), Gaps = 17/198 (8%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLS-QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GE 243
           C   C +C          S  L+   +++  +  +    E+ L GQ +       +  G 
Sbjct: 67  CRSKCRYCAFH-------SVPLTMDSMEDMERYAEAVAREMKLWGQRLGKPPAHTVYFGG 119

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDC------LIKAHGDLDVL-MPYLHLPVQ 296
                   Y+L  I   +R  +  S  ++ +         +    +L    +  L L VQ
Sbjct: 120 GTPSVLPEYALERIMRALRDSFDLSGCQEFTFEANPDSVHLNYLRELRDFGVNRLSLGVQ 179

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
           S ++  L  + R H A +  Q     R+      +S DFI G P +    +  T+   ++
Sbjct: 180 SLNNDELTFLGRPHNALQAVQAFHTARAAGFG-NVSLDFIWGLPRQNAASWIKTLKKAEE 238

Query: 357 IGYAQAFSFKYSPRLGTP 374
           +       +  +    TP
Sbjct: 239 LRPEHLSCYGLTIEPNTP 256


>gi|302872170|ref|YP_003840806.1| Radical SAM domain protein [Caldicellulosiruptor obsidiansis OB47]
 gi|302575029|gb|ADL42820.1| Radical SAM domain protein [Caldicellulosiruptor obsidiansis OB47]
          Length = 622

 Score = 60.0 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 57/349 (16%), Positives = 110/349 (31%), Gaps = 48/349 (13%)

Query: 69  TCHIREKAAE---KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVN 125
           TC++ +       K Y  +     +K  ++       +          G+ I++    + 
Sbjct: 197 TCYVTKDIQHLEGKDYIIIDSYEKVKEDKMAYARAFAIQYREQNPYT-GKIIVQPHKNLY 255

Query: 126 VVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEG 185
           VV   Q     P  +E   +           E  +  +   +GG      V   +    G
Sbjct: 256 VV---QNPPAKPLTVEEMDY-----VYSLPYERNYHPIYEKEGGIKALEEVKFSIVSHRG 307

Query: 186 CDKFCTFCVVPYTRGIEIS-RSLSQVVDEARK----------LIDNGVCEITLL------ 228
           C   C FC + + +G  I  RS   +++E +K          + D G             
Sbjct: 308 CFGGCNFCALHFHQGRIIQKRSQKSILEEVKKLTKLPDFKGYIHDVGGPTANFRNSACSL 367

Query: 229 ---------GQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIK 279
                     Q +     K L+ +   + +LL  + +IKG+ ++   +    D       
Sbjct: 368 QFERGACKNRQCLFPQPCKNLEVDHSEYFELLEKIRKIKGVKKVFIRSGIRYDYLLLDKN 427

Query: 280 AHGDLDVLMPYL-----HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA---- 330
               L+ L  Y       +  +  S+ +LK M +      Y + +         +     
Sbjct: 428 YRKFLEKLCMYYISGQLKIAPEHISNNVLKYMGKP-PKEVYEKFVREYFETNKRLNKKQY 486

Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
           I    + G PG T +D       + + G+       + P  GT  + M 
Sbjct: 487 IIPYLMSGHPGTTLEDAIELAVFLKRNGFVPEQVQDFYPTPGTVSTTMY 535


>gi|91792227|ref|YP_561878.1| lipoyl synthase [Shewanella denitrificans OS217]
 gi|123357072|sp|Q12QX1|LIPA_SHEDO RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|91714229|gb|ABE54155.1| lipoic acid synthetase [Shewanella denitrificans OS217]
          Length = 321

 Score = 60.0 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 27/184 (14%), Positives = 57/184 (30%), Gaps = 14/184 (7%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V    G  +     + V  A+ + D  +  + +   +    R    DG   
Sbjct: 94  CTRRCPFCDV--AHGRPLKPDAEEPVKLAQTIRDMKLKYVVITSVD----RDDLRDGGAQ 147

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLD--VLMPYLHLPVQSGSDRIL 303
            F+D +  + ++   +++       R   D  +         V    L            
Sbjct: 148 HFADCIREIRKLNPDIKIETLVPDFRGRIDAALDILSAEPPDVFNHNLETAPAHY----- 202

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           +             ++ R +   P I   S  ++G  GET+++    +  +         
Sbjct: 203 RKARPGANYQWSLDLLKRFKERHPHIPTKSGLMMGL-GETNEEIAEVLRDLRSHNVEMLT 261

Query: 364 SFKY 367
             +Y
Sbjct: 262 LGQY 265


>gi|239994428|ref|ZP_04714952.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Alteromonas macleodii
          ATCC 27126]
          Length = 36

 Score = 60.0 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 1/36 (2%)

Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVN 57
          + ++ ++K++GCQMN YDS +M D+  S  GY    
Sbjct: 1  MTKKLYIKTWGCQMNEYDSEKMADLLDSTHGYSAAE 36


>gi|225376528|ref|ZP_03753749.1| hypothetical protein ROSEINA2194_02170 [Roseburia inulinivorans DSM
           16841]
 gi|225211627|gb|EEG93981.1| hypothetical protein ROSEINA2194_02170 [Roseburia inulinivorans DSM
           16841]
          Length = 489

 Score = 60.0 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 39/219 (17%), Positives = 74/219 (33%), Gaps = 22/219 (10%)

Query: 158 DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKL 217
           D  ER   +    + + G + ++ I   C   C +C          S  L     +    
Sbjct: 147 DIAERELEILKKIDYENGYSLYIGIPF-CPTTCLYCSFT-------SYPLVSWRQKVDSY 198

Query: 218 IDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMS-- 274
           +D    E+  +           +  G     +   Y L  +   +R  +  SH  + +  
Sbjct: 199 LDALEKELDYVAVKFGKKHLNSIYIGGGTPTTLEPYQLDRLIRKIRCSFDLSHCLEFTVE 258

Query: 275 --------DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
                      ++     D+    + +  Q+  D  LK + RRHT  +  +     R + 
Sbjct: 259 AGRPDSITREKLETLKKWDI--TRISINPQTMKDETLKIIGRRHTVAQTVESFQLARELG 316

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
            D  I+ D I+G P E+ +D R T++ V  +        
Sbjct: 317 FD-DINMDLIMGLPEESLEDVRDTLEQVKALKPDNLTVH 354


>gi|213968047|ref|ZP_03396193.1| lipoyl synthase [Pseudomonas syringae pv. tomato T1]
 gi|301383636|ref|ZP_07232054.1| lipoyl synthase [Pseudomonas syringae pv. tomato Max13]
 gi|302063158|ref|ZP_07254699.1| lipoyl synthase [Pseudomonas syringae pv. tomato K40]
 gi|302131285|ref|ZP_07257275.1| lipoyl synthase [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|213927390|gb|EEB60939.1| lipoyl synthase [Pseudomonas syringae pv. tomato T1]
 gi|331014745|gb|EGH94801.1| lipoyl synthase [Pseudomonas syringae pv. lachrymans str.
           M302278PT]
          Length = 335

 Score = 60.0 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 34/215 (15%), Positives = 72/215 (33%), Gaps = 12/215 (5%)

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           + +    E  S  + G     G   F+ + + C + C FC V + R   +     +    
Sbjct: 75  HKLHSVCEEASCPNLGECFSGGTATFMIMGDICTRRCPFCDVGHGRPKAL--DADEPKSL 132

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI-KGLVRLRYTTSHPRD 272
           A  + D  +  + +   +    R    DG    F+D +  +  +  G+        +   
Sbjct: 133 AIAIADLRLKYVVITSVD----RDDLRDGGAQHFADCIREIRLLSPGIQLETLVPDYRGR 188

Query: 273 MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAIS 332
           M   L     +   +  +    V     R+ K+            ++ R + + P +   
Sbjct: 189 MDVALEITAAEPPDVFNHNLETV----PRLYKAARPGSDYQWSLTLLQRFKQMVPHVPTK 244

Query: 333 SDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           S  ++G  GETD++    M  + +         +Y
Sbjct: 245 SGLMLGL-GETDEEVIEVMKRMREHDIDMLTLGQY 278


>gi|16331072|ref|NP_441800.1| hypothetical protein sll0424 [Synechocystis sp. PCC 6803]
 gi|1653565|dbj|BAA18478.1| sll0424 [Synechocystis sp. PCC 6803]
          Length = 534

 Score = 60.0 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 54/255 (21%), Positives = 101/255 (39%), Gaps = 25/255 (9%)

Query: 179 FLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK 238
            + +   C + C FC+  Y           + +  A +        + LLG +V      
Sbjct: 225 MVEVVRSCPEMCRFCLASYLTLPFRPADTEKSLLPAIERGLQVSDRLGLLGASVTQH--- 281

Query: 239 GLDGEKCTFSDLLYSLSEIK-GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQS 297
                   F++LL  L + +   VRL   +     + + L +           L + ++S
Sbjct: 282 ------PEFNELLDYLGKPEFDHVRLSIASVRTNTVDEKLAQTLAK--RGTKSLTIAIES 333

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSV-RPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
           GS+++ + +N++ T  E      + ++     + +    +VG PGET  D  AT+DL+ +
Sbjct: 334 GSEKLRQIINKKLTNEEILTAAQQAQAGGLQGLKLYG--MVGVPGETRSDVEATVDLLKQ 391

Query: 357 IGYAQAF---SFKYS---PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFN-DAC 409
           +         +F  S   P+  TP         E    +RL  LQKKLR   V F  ++ 
Sbjct: 392 VKKVAPGLRLTFGCSTFVPKAHTP-FQWYGVNPEA--KQRLQFLQKKLRPLGVDFRPESY 448

Query: 410 VGQIIEVLIEKHGKE 424
              +++ LI +  + 
Sbjct: 449 NWSVMQALISRGDRR 463


>gi|320355324|ref|YP_004196663.1| Radical SAM domain-containing protein [Desulfobulbus propionicus
           DSM 2032]
 gi|320123826|gb|ADW19372.1| Radical SAM domain protein [Desulfobulbus propionicus DSM 2032]
          Length = 517

 Score = 60.0 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 42/299 (14%), Positives = 85/299 (28%), Gaps = 17/299 (5%)

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           +R L     +   + +VV+ G         +       + ++  +      EL +     
Sbjct: 72  VRQLVGVLKRVAPETIVVLGGPEVSHLP--LRVDLREADYLIQGEGEQAFRELCQAIFAH 129

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTA---FLTIQEGCDKFCTFCVVPYTRGIEI 203
           +         E            +     V     ++    GC   C FC+    R    
Sbjct: 130 QPPAKRIIQAEPVTVETLASPYPFYTNDDVAHRLTYVEASRGCPFRCEFCLSSIDR-RVR 188

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
             ++   + E   L   G      + +  NA           T + +L           +
Sbjct: 189 PFAVDWFLAEMEALWQRGARTFKFVDRTFNA--------NPATAARILDYFLAKTPPFHV 240

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
            +    P      + +           L + +Q+   RI  +++RR      R+ +  + 
Sbjct: 241 HFEVI-PDHFPQAIKERLARFPAGTLQLEIGIQTMDARIAANISRRLDVDRIRENLRFLE 299

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
                  +  D IVG PGE  + F   ++ +      +          GT      +QV
Sbjct: 300 QETA-AHLHVDLIVGLPGEPIEQFGRNLNTLVAQTQGEIQIGILKKLSGT-AITRHDQV 356


>gi|307719991|ref|YP_003891131.1| Radical SAM domain-containing protein [Sulfurimonas autotrophica
           DSM 16294]
 gi|306978084|gb|ADN08119.1| Radical SAM domain protein [Sulfurimonas autotrophica DSM 16294]
          Length = 499

 Score = 60.0 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 40/269 (14%), Positives = 85/269 (31%), Gaps = 15/269 (5%)

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +  L +   K      +++ G   +   +         + ++  +      EL ++   
Sbjct: 70  EVHELIHIIKKVSPQTRIILGG--PEVTYQPFRVNFDDADYIIQGEGDLAFYELCKKIIN 127

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGY--NRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
            ++V           + + +    Y  +  +    ++ I  GC   C FC+         
Sbjct: 128 EEKVDKIIKMSAPNLKEIQLPYMYYTDDDIKNRYIYVEISRGCPFECEFCL-SSMDEKVR 186

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           +  L +V+ E  KL + G      + +  N          K     L + L +       
Sbjct: 187 AFELDEVLAEFEKLWERGARNFKFVDRTFNLNM-------KAANKILDFFLEKEPPYFAH 239

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
                        L +           L + +Q+ +  I  +++R+    + +  I R  
Sbjct: 240 FEVIPD--HFPASLREKIKRFAPGALQLEIGIQTLNPVIANNISRQLKLDKIKDNI-RFL 296

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMD 352
                  I  D IVG PGE+ + F   +D
Sbjct: 297 ENETTAHIHLDLIVGLPGESLESFGRNLD 325


>gi|182626898|ref|ZP_02954632.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Clostridium perfringens D str. JGS1721]
 gi|177907748|gb|EDT70360.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Clostridium perfringens D str. JGS1721]
          Length = 377

 Score = 60.0 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 35/235 (14%), Positives = 88/235 (37%), Gaps = 20/235 (8%)

Query: 186 CDKFCTFCVVPYTRGI--EISRSLSQVVDEA---RKLIDNGVCEITLLGQNVNAWRGKGL 240
           C + C +C  P            +  +  E    R+  +N       +G    +      
Sbjct: 13  CAQKCLYCDFPSFARKDHLRKAYIEALNKEIISLREKHNNLEINTIFIGGGTPSVLEADE 72

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTT-SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
                    LL  ++++     + Y+   +P ++++  ++        +  + + +Q+  
Sbjct: 73  ------LECLLKEVAKLNMAKDVEYSMECNPGNLTEEKLEVMKKYG--VNRISMGLQAKQ 124

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
           D +LK + R H    +++     + V  +  I+ D + G P +  +++  T+  +  +  
Sbjct: 125 DNLLKGLGRIHNYKTFKENFLLAKKVGFN-NINVDLMFGLPNQRLNEWEETLREIISLEP 183

Query: 360 AQAFSFKYSPRLGTPGSNMLE----QVDENVKAERLLCLQKKLREQQVSFNDACV 410
           A   ++      GT   N+ E    ++    +  ++  L KK+ E+   FN   +
Sbjct: 184 AHISAYSLIIEEGTAFYNLYENDKLKLPTEEEERKMYHLAKKILEEN-GFNQYEI 237


>gi|153816119|ref|ZP_01968787.1| hypothetical protein RUMTOR_02367 [Ruminococcus torques ATCC 27756]
 gi|317502042|ref|ZP_07960224.1| oxygen-independent coproporphyrinogen III oxidase 2
           [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331090442|ref|ZP_08339323.1| hypothetical protein HMPREF1025_02906 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145846604|gb|EDK23522.1| hypothetical protein RUMTOR_02367 [Ruminococcus torques ATCC 27756]
 gi|316896516|gb|EFV18605.1| oxygen-independent coproporphyrinogen III oxidase 2
           [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330401189|gb|EGG80782.1| hypothetical protein HMPREF1025_02906 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 492

 Score = 60.0 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 34/204 (16%), Positives = 68/204 (33%), Gaps = 22/204 (10%)

Query: 173 KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNV 232
           K G + ++ I   C   C++C          S  +++  D+    +   + EI  +G+  
Sbjct: 165 KDGFSLYVGIPF-CPSVCSYCSFS-------SSPIAEWKDKVESYLFALLKEIRAIGKMS 216

Query: 233 NAWRGKGLD---GEKCTFS--DLLYSLSEIKGLVRLRYTTSHPRD------MSDCLIKAH 281
              R   +    G   T     +   L  I     L        +      +++  +   
Sbjct: 217 EGHRPDSVYIGGGTPTTLEAEQMDRLLKTITENFDLSNVLEFTVEAGRPDSITEEKLAVI 276

Query: 282 GDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPG 341
                 +  + +  Q+   + L  + R HT  + +      R +  D  I+ D I G PG
Sbjct: 277 RKYP--VTRISINPQTMQQKTLDLVGRNHTVAQTKDAFYLARKLGFD-NINMDLIAGLPG 333

Query: 342 ETDDDFRATMDLVDKIGYAQAFSF 365
           E   D   T+  V+++        
Sbjct: 334 EDASDMEDTLRQVEEMHPDSLTVH 357


>gi|20808294|ref|NP_623465.1| biotin synthase [Thermoanaerobacter tengcongensis MB4]
 gi|20516897|gb|AAM25069.1| Biotin synthase and related enzymes [Thermoanaerobacter
           tengcongensis MB4]
          Length = 353

 Score = 60.0 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 26/202 (12%), Positives = 69/202 (34%), Gaps = 18/202 (8%)

Query: 175 GVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS--LSQVVDEARKLIDNGVCEITLLGQNV 232
            +   +     C   C +C +               ++++ A++ ++  +  I L     
Sbjct: 58  HLRGLIEFSNYCHNTCFYCGLRGPNKAIKRYRMEPEEIIECAKRGVEMELKTIVLQS--- 114

Query: 233 NAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLH 292
               G+    +  T  +++  + E+   V L       ++    L KA  D         
Sbjct: 115 ----GEDRYYKITTLCNIVEKIKEMDVAVTLIIGELSKKEY-AELKKAGADR------YL 163

Query: 293 LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352
           L +++ +  + + ++   +     + +  +R +     + +  ++G PG+T +     + 
Sbjct: 164 LRIETTNRELYRKLHPGMSYENRLRCLMDLREL--GYEVGTGSLIGLPGQTLEMLADDLL 221

Query: 353 LVDKIGYAQAFSFKYSPRLGTP 374
              KI         + P   TP
Sbjct: 222 FFKKINADMLGIGPFIPCENTP 243


>gi|28871933|ref|NP_794552.1| lipoic acid synthetase [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|47117212|sp|Q87VW7|LIPA_PSESM RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|28855186|gb|AAO58247.1| lipoic acid synthetase [Pseudomonas syringae pv. tomato str.
           DC3000]
          Length = 318

 Score = 60.0 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 34/215 (15%), Positives = 72/215 (33%), Gaps = 12/215 (5%)

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           + +    E  S  + G     G   F+ + + C + C FC V + R   +     +    
Sbjct: 58  HKLHSVCEEASCPNLGECFSGGTATFMIMGDICTRRCPFCDVGHGRPKAL--DADEPKSL 115

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI-KGLVRLRYTTSHPRD 272
           A  + D  +  + +   +    R    DG    F+D +  +  +  G+        +   
Sbjct: 116 AIAIADLRLKYVVITSVD----RDDLRDGGAQHFADCIREIRLLSPGIQLETLVPDYRGR 171

Query: 273 MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAIS 332
           M   L     +   +  +    V     R+ K+            ++ R + + P +   
Sbjct: 172 MDVALEITAAEPPDVFNHNLETV----PRLYKAARPGSDYQWSLTLLQRFKQMVPHVPTK 227

Query: 333 SDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           S  ++G  GETD++    M  + +         +Y
Sbjct: 228 SGLMLGL-GETDEEVIEVMKRMREHDIDMLTLGQY 261


>gi|291278929|ref|YP_003495764.1| hypothetical protein DEFDS_0514 [Deferribacter desulfuricans SSM1]
 gi|290753631|dbj|BAI80008.1| conserved hypothetical protein [Deferribacter desulfuricans SSM1]
          Length = 301

 Score = 60.0 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 38/212 (17%), Positives = 65/212 (30%), Gaps = 25/212 (11%)

Query: 180 LTIQEG--CDKF--------CTFCVVPYTRG---IEISRSLSQVVDEARKLIDNGVCEIT 226
           ++I  G  C           CT+C V         +IS+   QV D  + L    +    
Sbjct: 21  ISIDAGFTCPNRDGYKGFGGCTYCNVKSFSNINEKDISK---QVSDRIKFLEKRKIKNFI 77

Query: 227 LLGQNVNAWRGK-GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLD 285
           +  Q+ +   G   +   K   S +   +  I    R              L       +
Sbjct: 78  VYFQSYSNTYGPIDMIKRKIEASLVDERIVAIYVGTRPDCIDEDKIKYFKEL------SE 131

Query: 286 VLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDD 345
            +   L   +QS  +  L+ +NR  T  E+   +   +S    + + +  I G PGE  D
Sbjct: 132 KIDVVLEYGLQSIHNTTLEIINRGSTFEEFDFALKLTKSY--GLPVCAHIIFGLPGENRD 189

Query: 346 DFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
               T+  +                 GT    
Sbjct: 190 MMFETVKYLADNKIDFIKFHHLHVVKGTKMHK 221


>gi|238794560|ref|ZP_04638168.1| Oxygen-independent coproporphyrinogen III oxidase [Yersinia
           intermedia ATCC 29909]
 gi|238726140|gb|EEQ17686.1| Oxygen-independent coproporphyrinogen III oxidase [Yersinia
           intermedia ATCC 29909]
          Length = 459

 Score = 60.0 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 39/247 (15%), Positives = 84/247 (34%), Gaps = 18/247 (7%)

Query: 173 KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS-------QVVDEARKLIDNGVCEI 225
           +R ++ ++ I   C K C FC        +  ++         ++   A       V ++
Sbjct: 52  QRPLSLYVHIPF-CHKLCYFCGCNKLVTRQQHKADEYLAVLEKEICQRATFFAGRQVSQM 110

Query: 226 TLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLD 285
              G        K +        D    L   +  + +      PR++   ++       
Sbjct: 111 HWGGGTPTYLNKKQITHLMNLLRDNFDFLPGAEQSIEV-----DPREIELDVLDHLRAEG 165

Query: 286 VLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDD 345
                L + VQ  +  + + +NR         +I R +++  + + + D I G P +T +
Sbjct: 166 --FNRLSMGVQDFNKEVQRLVNREQDEDFIFALIARAKALGFN-STNIDLIYGLPKQTPE 222

Query: 346 DFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVS 404
            F  T+  V ++   +   F Y+       +   ++  D     +RL  LQ  +     S
Sbjct: 223 SFAFTLKRVAELNPDRLSVFNYAHLPSLFAAQRKIKDADLPSAEQRLDILQHTISFLTES 282

Query: 405 FNDACVG 411
                +G
Sbjct: 283 GYQ-FIG 288


>gi|206577088|ref|YP_002241254.1| oxygen-independent coproporphyrinogen III oxidase [Klebsiella
           pneumoniae 342]
 gi|206566146|gb|ACI07922.1| oxygen-independent coproporphyrinogen III oxidase [Klebsiella
           pneumoniae 342]
          Length = 457

 Score = 60.0 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 40/255 (15%), Positives = 88/255 (34%), Gaps = 34/255 (13%)

Query: 173 KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS-------LSQVVDEARKLIDNGVCEI 225
           +R ++ ++ I   C K C FC        +  ++         +++  A +     V ++
Sbjct: 50  QRPLSLYVHIPF-CHKLCYFCGCNKIVTRQQHKADQYLDVLEQEIIRRAPQFASRQVKQL 108

Query: 226 TLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLD 285
              G                        +S +  L+R  +  S   ++S  +     +LD
Sbjct: 109 HWGGGTPTY--------------LNKAQISRLMDLLRSHFHFSAEAEISIEVDPREIELD 154

Query: 286 VL-------MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS-DFIV 337
           VL          L + VQ  +  + + +NR         ++   R +      ++ D I 
Sbjct: 155 VLDHLRTEGFNRLSMGVQDFNKEVQRLVNREQDEAFIFDLLHHAREI--GFTSTNIDLIY 212

Query: 338 GFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQK 396
           G P +T + F  T+  V ++   +   F Y+       +   ++  D     ++L  LQ+
Sbjct: 213 GLPKQTPESFAFTLQKVAELNPDRLSVFNYAHLPTLFAAQRKIKDADLPTAEQKLEILQE 272

Query: 397 KLREQQVSFNDACVG 411
            +     +     +G
Sbjct: 273 TIGSLTAAGYQ-FIG 286


>gi|15615514|ref|NP_243818.1| Mg-protoporphyrin IX monomethyl ester oxidative cyclase [Bacillus
           halodurans C-125]
 gi|10175574|dbj|BAB06671.1| Mg-protoporphyrin IX monomethyl ester oxidative cyclase [Bacillus
           halodurans C-125]
          Length = 592

 Score = 60.0 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 46/288 (15%), Positives = 89/288 (30%), Gaps = 27/288 (9%)

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +     +     K    + +V+ G     +  E + R   V+ +V  +       LLE  
Sbjct: 67  IQETIQVIEMLKKVMPSVKIVLGGPEVSYDTREWMERLHAVDFIVVGEGEETFKHLLEEM 126

Query: 144 RFGKRVVDT---------DYSVEDKFERLSIVDGGYNRK--------RGVTAFLTIQEGC 186
               +             D  +     +L + +     +             +     GC
Sbjct: 127 NTTAKYHLVFGLAYRKGDDIVINPPRPKLPLNELPSPYRFSEDVASLSKRVTYFETSRGC 186

Query: 187 DKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT 246
              C FC+     G      L +V  +   LI++G   I  + +  N  R   L      
Sbjct: 187 PYSCQFCLSSIEVG-VRYFDLERVKADLLYLINSGAKLIKFVDRTFNIRRDYAL------ 239

Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306
             ++   L E       ++  +      + L   +      +    + VQS +D   + +
Sbjct: 240 --EVFRFLIENHQGCVFQFEITADIMRPEVLAFLNEHAPKGIFRFEIGVQSTNDLTNELV 297

Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
            RR    + ++ +  ++     I    D I G P E    FR T + V
Sbjct: 298 QRRQNFEKLKRTVTMVKEG-GKIDQHLDLIAGLPEEDYQSFRKTFNDV 344


>gi|289668724|ref|ZP_06489799.1| Mg-protoporphyrin IX monomethyl ester oxidative cyclase
           [Xanthomonas campestris pv. musacearum NCPPB4381]
          Length = 517

 Score = 60.0 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 42/235 (17%), Positives = 72/235 (30%), Gaps = 19/235 (8%)

Query: 155 SVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEA 214
              D  +          R    +  +    GC   C +C  P        R   +V  E 
Sbjct: 208 PAWDLVDMPRYQRFWQQRHGYFSLNMAASRGCPFRCNWCAKPIWGNHYKRRGAEEVAAEM 267

Query: 215 RKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMS 274
             L  +   +   +  ++  +    ++            LS+  G   + +T     D++
Sbjct: 268 IHLKRSFQPDHIWMADDIFGFHIDWVET-------FAQQLSDADGA--IPFTIQTRADLA 318

Query: 275 DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSD 334
              + A            +  +SGS RIL  M +     E     +R+ +    I +   
Sbjct: 319 SERMAAALARAGCAEAW-IGAESGSQRILDKMTKGMQVGEVIAARERLGTQ--GIRVGFF 375

Query: 335 FIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAE 389
             +G+ GE  DD  AT  LV +            P  GT          E VK +
Sbjct: 376 IQLGYLGEELDDILATRALVTQANPDIIGVSVSYPLPGTKFY-------EEVKNQ 423


>gi|226311213|ref|YP_002771107.1| hypothetical protein BBR47_16260 [Brevibacillus brevis NBRC 100599]
 gi|226094161|dbj|BAH42603.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599]
          Length = 592

 Score = 60.0 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 48/293 (16%), Positives = 99/293 (33%), Gaps = 32/293 (10%)

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +    ++  +  K   D+ +++ G     + +E +++ P ++V+   +      ELL+  
Sbjct: 68  IRETLSVMRTLKKICPDVPIILGGPEVTYDADEWMKKHPEIDVICIGEGEQTFLELLQVY 127

Query: 144 RFG---------KRVVDTDYSVED---------KFERLSIVDGGY----NRKRGVTAFLT 181
           +           + V    Y  E+         + E +  +   Y    +       +  
Sbjct: 128 QESLQTKQPPRLRDVAGIAYREEEYVRFSMPRAQVEEMDSIPSPYADHLDELNNRVVYFE 187

Query: 182 IQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD 241
              GC   C +C+     G     SL +V ++  +LI++GV  I  + +  N        
Sbjct: 188 ASRGCPFKCQYCLSSIEDG-VRYFSLERVKEDLMRLINHGVKTIKFVDRTFNIN------ 240

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
            +K       + +    G V     T+                  +     + VQS +D 
Sbjct: 241 -KKYALEIFQFLIDNHNGTVFQFEITADILRADVLDFLTENAPPGIFR-FEIGVQSTNDE 298

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
             + + R        + + +I+  +  I    D I G P E    FR T + V
Sbjct: 299 TNRLVQRIQRFDRLARTVTQIKDSK-KIDQHLDLIAGLPEEDYASFRKTFNDV 350


>gi|91773723|ref|YP_566415.1| hypothetical protein Mbur_1776 [Methanococcoides burtonii DSM 6242]
 gi|91712738|gb|ABE52665.1| protein of unknown function UPF0313 [Methanococcoides burtonii DSM
           6242]
          Length = 622

 Score = 60.0 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 39/267 (14%), Positives = 84/267 (31%), Gaps = 33/267 (12%)

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           +  ++ +D  Y +                   V   +T   GC   C+FC +   +G  I
Sbjct: 284 QLSQKELDHVYDLPYTRREHPSYKEPVPALETVRVSITTHRGCFGSCSFCAIAQHQGRMI 343

Query: 204 -SRSLSQVVDEARKLIDNGVCEITLLG----------------QNVNAWRGK-------- 238
            SRS+  ++ EA  L      +  ++G                +N  A + K        
Sbjct: 344 TSRSIDSILREAELLTRMKEFKGNIIGVGGPSANMYAMKCKNWENKGACKDKLCLYPEPC 403

Query: 239 -GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL--DVLMPYLHLPV 295
             +D       ++L  L E+  + R+  +     D++    +   +L    +   L +  
Sbjct: 404 PSMDTSHKENIEMLRQLREMPEVKRVFVSYGVRYDLALQDPEYITELCQYHVSGQLKIAP 463

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRS----VRPDIAISSDFIVGFPGETDDDFRATM 351
           +  S  +   M +      + +     +     +  D  + +  + G P  T D+     
Sbjct: 464 EHFSKSVTDCMKKPG-REVFEKFAKIFKETNKRLNKDQYLVTFLMSGHPACTMDNMIELA 522

Query: 352 DLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           + +            + P   T  + M
Sbjct: 523 EYIKATDRYTEQVQDFIPTPMTAATCM 549


>gi|319780366|ref|YP_004139842.1| magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative
           cyclase [Mesorhizobium ciceri biovar biserrulae WSM1271]
 gi|317166254|gb|ADV09792.1| magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative
           cyclase [Mesorhizobium ciceri biovar biserrulae WSM1271]
          Length = 522

 Score = 60.0 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 31/203 (15%), Positives = 65/203 (32%), Gaps = 12/203 (5%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGK 238
           +    GC   C +C           R   +   E   L    GV  I L  +N       
Sbjct: 197 MQFSRGCPHLCNYCGQRGFWTRWRHRDPVKFAREIAWLHRQHGVELINLADENPTVS--- 253

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
               +K   + L   ++E   ++ +  T +        ++  +    V+     L +++ 
Sbjct: 254 ----KKAWRAFLDALIAENVPVLIVGSTRADDIVRDADILHLYRKAGVIR--WLLGMENT 307

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
            ++ L+ + +  +    R+ I  +R     I   + ++ GF  E   D       +    
Sbjct: 308 DEQTLQLIRKGGSTSSDREAIRLLR--LSGILSMATWVSGFEDEGFRDLWRGFRQLIAYD 365

Query: 359 YAQAFSFKYSPRLGTPGSNMLEQ 381
             Q  +   +P   TP   +   
Sbjct: 366 PDQIQALYVTPHRWTPFFRIARD 388


>gi|317486235|ref|ZP_07945068.1| radical SAM protein [Bilophila wadsworthia 3_1_6]
 gi|316922481|gb|EFV43734.1| radical SAM protein [Bilophila wadsworthia 3_1_6]
          Length = 621

 Score = 60.0 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 44/258 (17%), Positives = 82/258 (31%), Gaps = 28/258 (10%)

Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSLS 208
           +D  Y++                   +   +T   GC   C+FC +   +G  I SRS +
Sbjct: 309 LDGLYALPFSRRPHPSYKEPIPAVEMIATSITTHRGCGGGCSFCSLALHQGRRIASRSEA 368

Query: 209 QVVDEARKLID--NGVCEITLLGQNVNAW--------------------RGKGLDGEKCT 246
            ++DEA+++     G     + G + N W                      KG   ++  
Sbjct: 369 SILDEAKRIAAMPRGGSISDVGGPSANMWGAACRLDPSKCRRDSCMYPSICKGFSVDQRA 428

Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMP--YLHLPVQSGSDRILK 304
             DLL  +    G+  +R  +    D++     A            L +  +     +L 
Sbjct: 429 CIDLLRDVQATPGVKHVRVASGVRFDLALKDATALAAYTGEFTGGQLKIAPEHCVPDVLD 488

Query: 305 SMNRRHTA--YEYRQIIDRIRSVR-PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
            M +        + +   R       +  +    +  FPG TD   R   D +    ++ 
Sbjct: 489 LMRKPGMKPFEAFLEAFVRYSEAHGKEQYVIPYLMSAFPGCTDAHMRQLGDWLAARNWSP 548

Query: 362 AFSFKYSPRLGTPGSNML 379
                + P  GT  + M 
Sbjct: 549 RQVQCFIPTPGTVATAMY 566


>gi|303247599|ref|ZP_07333870.1| Radical SAM domain protein [Desulfovibrio fructosovorans JJ]
 gi|302491079|gb|EFL50973.1| Radical SAM domain protein [Desulfovibrio fructosovorans JJ]
          Length = 491

 Score = 60.0 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 54/312 (17%), Positives = 102/312 (32%), Gaps = 51/312 (16%)

Query: 99  GDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL--------------LERAR 144
               VV+ G    A   E + +S +  V+ G    + L +L              + R  
Sbjct: 104 PKAAVVLMGDHVTALPRETMEQSSVDYVIAGGDFDFILADLADHLDGKDVPMPAGVWRRE 163

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGY-----------NRKRGVTAFLTIQEGCDK-FCTF 192
            G+ V     S+    + L  +D              N K     ++     C    CTF
Sbjct: 164 GGEIVDGGMGSLNHNLDDLPYIDRDLTKWQRYAYKNGNFKYTPGTYVMAGRDCWWGRCTF 223

Query: 193 CVVPYTRGI--EISRSLSQVVDEARKLI-DNGVCEITLLGQNVNAWRGKGLDGEKCTFSD 249
           C            + S  + V E  +L+ + GV EI         +   G         +
Sbjct: 224 CSWTTLFPGATYRTVSPERHVAEIERLVTERGVREI---------FDDSGCFPRGAWLEE 274

Query: 250 LLYSLSEIKGLVRLRYTTSHPR--DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307
               L + KGL +      + R  +++          +    ++ + ++S S   L  + 
Sbjct: 275 FCQRLID-KGLHKKVVMGCNMRVGELTQDQWNLLKKAN--FRFILIGLESMSQATLNRLC 331

Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ-----A 362
           +     +  Q +   +     +      +VG+P ET +D R T+D    + +++      
Sbjct: 332 KGIKVEQIEQTVAMAKKA--GLEPHITTMVGYPWETREDARRTIDFAKSL-FSRGLLNTL 388

Query: 363 FSFKYSPRLGTP 374
            +    P  GTP
Sbjct: 389 QATIVVPYPGTP 400


>gi|255010537|ref|ZP_05282663.1| hypothetical protein Bfra3_15473 [Bacteroides fragilis 3_1_12]
 gi|313148343|ref|ZP_07810536.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313137110|gb|EFR54470.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 617

 Score = 60.0 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 45/276 (16%), Positives = 91/276 (32%), Gaps = 54/276 (19%)

Query: 151 DTDYSVEDKFERLSIVDGGYNR---KRGVTAFLTIQEGCDKFCTFCVVPYTRGIE-ISRS 206
           + D+S +  + RL        R      +   + I  GC   C FC +   +G   +SRS
Sbjct: 286 ELDHSFDLPYTRLPHPKYKGKRIPAYDMIKFSINIHRGCFGGCAFCTISAHQGKFIVSRS 345

Query: 207 LSQVVDEARKLI---DNGVCEITLLGQNVNAWRGKGLD---------------------- 241
              ++ E ++++   D       L G + N ++  G D                      
Sbjct: 346 KESILKEVKEVVQLPDFKGNLSDLGGPSANMYKMGGKDLALCKRCKRPSCIHPKVCPNLN 405

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYT-----------------TSHPRDMSDCLIKAHGDL 284
            +     D+ +++  +  + R                          + +  LI  H   
Sbjct: 406 TDHRPLLDIYHAVDSLPEIKRSFIGSGVRYDLLLHQSKDPSVNKSTAEYTRELIARH--- 462

Query: 285 DVLMPYLHLPVQSGSDRILKSMNRRHTAYE--YRQIIDRI-RSVRPDIAISSDFIVGFPG 341
             +   L +  +  SDR+L  M +   +    +++I DRI R +     +   FI   PG
Sbjct: 463 --VSGRLKVAPEHTSDRVLSIMRKPAFSQFGEFKKIFDRINRELGLRQQLIPYFISSHPG 520

Query: 342 ETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
             ++D      +  +  +       ++P   T  + 
Sbjct: 521 CREEDMAELAVITKRQDFHLEQVQDFTPTPMTVATE 556


>gi|254229683|ref|ZP_04923093.1| radical SAM protein, family [Vibrio sp. Ex25]
 gi|262395234|ref|YP_003287088.1| hypothetical protein VEA_004465 [Vibrio sp. Ex25]
 gi|151937804|gb|EDN56652.1| radical SAM protein, family [Vibrio sp. Ex25]
 gi|262338828|gb|ACY52623.1| hypothetical protein VEA_004465 [Vibrio sp. Ex25]
          Length = 319

 Score = 60.0 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 50/232 (21%), Positives = 85/232 (36%), Gaps = 23/232 (9%)

Query: 181 TIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLG--QNVNAWRGK 238
           TI  G    CTFC V      E+   +  + D+ +            L   Q   +   +
Sbjct: 39  TIGRG---GCTFCNVASFADEEV--QIKSIHDQLKDRAGEIHRAKKYLAYFQAYTSTYAE 93

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
            +   K  + + L + ++I GL         P  + D L         +  +L L +Q+ 
Sbjct: 94  -VQVLKNMYEEALKA-ADIVGLCVGTRPDCVPDAVLDLLSDYVQQGYEI--WLELGLQTA 149

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           ++  LK +NR H    Y +I  R R++   I + +  IVG P E+ DD   T+  V  +G
Sbjct: 150 NNDTLKRINRGHDFECYAEITKRARAL--GIKVCTHLIVGLPKESRDDNIETLQKVLAVG 207

Query: 359 YAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACV 410
                        G+  +          KA R   L+    E+ V+     +
Sbjct: 208 TDGIKLHGLHIVEGSTMA----------KAWRAGRLEAPELEEYVAIASEMI 249


>gi|114566452|ref|YP_753606.1| oxygen-independent coproporphyrinogen III oxidase, Fe-S
           oxidoreductase [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
 gi|114337387|gb|ABI68235.1| oxygen-independent coproporphyrinogen III oxidase, Fe-S
           oxidoreductase [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
          Length = 292

 Score = 60.0 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 42/217 (19%), Positives = 73/217 (33%), Gaps = 19/217 (8%)

Query: 169 GYNRKRGVTAFLTIQEGCDK-FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITL 227
                   +  L +  GC    CTFC + Y       RSL +V+ + R           L
Sbjct: 8   YRPPSEARSYILQVTIGCSHNRCTFCSM-YKDKKYRVRSLDEVMADIRM--------AKL 58

Query: 228 LGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL 287
              ++        D       DL+  ++E+K                  L K   +L  L
Sbjct: 59  YYGDLEKVFLADGDALAVETGDLVKIIAELKKNFYSLRHIGIYASPDSILSKDIEELKRL 118

Query: 288 ----MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGET 343
               +   +L V++G   +LK + +  T  E  +   +IR     I +S   ++G  G T
Sbjct: 119 KEAGLTIAYLGVETGDPELLKDIKKGVTYEEMVEAGKKIREA--GILLSVTVLLGLAGRT 176

Query: 344 D---DDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
               D  R T  +++++      +        TP   
Sbjct: 177 PQAVDHARKTAQILNEMNPDYVGALTLMLEPRTPLYR 213


>gi|238921398|ref|YP_002934913.1| hypothetical protein NT01EI_3542 [Edwardsiella ictaluri 93-146]
 gi|238870967|gb|ACR70678.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
          Length = 750

 Score = 60.0 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 60/321 (18%), Positives = 105/321 (32%), Gaps = 61/321 (19%)

Query: 159 KFERLSIVDGGYNRKRG---VTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEA 214
            F+R+     G  R      +   + I  GC   C FC +    G  I SRS   ++ E 
Sbjct: 351 PFQRVPHPTYGKARLPAYDMIRFSVNIMRGCYGGCAFCSITEHEGRIIQSRSEDSIIREI 410

Query: 215 RKLIDN--GVCEIT--LLGQNVNAWR----------------------GKGLDGEKCTFS 248
            ++ D   G   I   L G   N +                        + +D       
Sbjct: 411 EEIRDKVPGFTGIISDLGGPTANMYMLRCQSPRAEQTCRRSSCVYPDICRHMDTNHEPTI 470

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSM 306
            L     +++G+ ++   +    D++    +   +L    +  YL +  +   +  L  M
Sbjct: 471 KLYRRARDLQGVKKILIASGVRYDLAVQDPRYIKELATHHVGGYLKIAPEHTEEGPLSKM 530

Query: 307 NRRHTAYEYR--QIIDRI-RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY--AQ 361
            +      YR  ++ D   +    +  +   FI   PG  D+D       + +  +   Q
Sbjct: 531 MKPGMGSYYRFKELFDAYSKQAGKEQYLIPYFISAHPGTRDEDMVNLALWLKQHRFRLDQ 590

Query: 362 AFSFKYSPR-----LGTPGSNMLEQVD---ENV---KAERLLCLQKKLRE---------Q 401
             +F  SP      +   G N L +VD   E+V   K ER   L K L            
Sbjct: 591 VQNFYPSPLANSTTMYYTGKNPLAKVDYKSEDVVVPKGERQRRLHKALLRYHDPANWPMI 650

Query: 402 QVSF----NDACVGQIIEVLI 418
           + +         +G   E L+
Sbjct: 651 RAALEEMGLQHLIGNRRECLV 671


>gi|149909673|ref|ZP_01898325.1| lipoyl synthase [Moritella sp. PE36]
 gi|149807187|gb|EDM67142.1| lipoyl synthase [Moritella sp. PE36]
          Length = 321

 Score = 60.0 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 32/222 (14%), Positives = 75/222 (33%), Gaps = 14/222 (6%)

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
           + V  + ++    E  S  +       G   F+ +   C + C FC V    G  +    
Sbjct: 56  KAVMRENNLHSVCEEASCPNLTECFNHGTATFMIMGAICTRRCPFCDV--AHGKPLPLVA 113

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
            + +  A+ +    +  + +   +    R    DG    F D +  +  +   +++    
Sbjct: 114 EEPLKLAQTIAKMKLKYVVITSVD----RDDLRDGGAQHFVDCIREIRLLNPEIKIEILV 169

Query: 268 SHPRDMSDCLIKAHGDLD--VLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
              +   D  ++   D    V    L    Q       K            +++ R + +
Sbjct: 170 PDFKGRMDKALEIFKDTPPDVFNHNLETAPQHY-----KMARPGSDYQWSLRLLKRFKEM 224

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
            P++   S  ++G  GET+++    ++ + + G       +Y
Sbjct: 225 HPNVPTKSGLMMGL-GETNEEIAEVINDLAENGVTMLTLGQY 265


>gi|289422296|ref|ZP_06424147.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Peptostreptococcus anaerobius 653-L]
 gi|289157301|gb|EFD05915.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Peptostreptococcus anaerobius 653-L]
          Length = 378

 Score = 60.0 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 34/204 (16%), Positives = 71/204 (34%), Gaps = 20/204 (9%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C K C +C      G +         +E    +D+   E+ L            + G   
Sbjct: 14  CAKKCYYCDFTSYVGRD---------EEINSYLDSLEKEMDLYMDKKEDIYSIFIGGGTP 64

Query: 246 TFS---DLLYSLSEIKGLVRLRYTTSHPRD-----MSDCLIKAHGDLDVLMPYLHLPVQS 297
           +      L      I+  V L     +  +     ++   ++        +  L + +Q+
Sbjct: 65  SLLSPDQLDRLFGIIEKKVNLESLCEYTIESNPGTLTRDKLRTMKKHG--VNRLSMGLQA 122

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
             D+ LK M R H   ++ +  +  R    +  I+ D I  F G+T +D++ +++ V  +
Sbjct: 123 VQDKHLKFMGRIHDMDQFVESFEFARQEGLE-NINVDLIFAFEGQTLEDWKESLEKVVAM 181

Query: 358 GYAQAFSFKYSPRLGTPGSNMLEQ 381
                 ++      GT    M + 
Sbjct: 182 NPDHISAYSLIIEEGTTFYRMYQD 205


>gi|258511966|ref|YP_003185400.1| oxygen-independent coproporphyrinogen III oxidase [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257478692|gb|ACV59011.1| oxygen-independent coproporphyrinogen III oxidase [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 388

 Score = 60.0 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 34/205 (16%), Positives = 68/205 (33%), Gaps = 24/205 (11%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C   C +C            S + +      L+        L      A+ G    G   
Sbjct: 20  CKSRCFYCDFTTFVK-----SPAAMEAYVDALVAEWDLMEPLEAPLATAYFGG---GTPT 71

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDC---------LIKAHGDLDVLMPYLHLPVQ 296
            FS  L  L  +   +R R+      +++            ++   D    +  +    Q
Sbjct: 72  LFSASL--LDRLLDAMRQRFEFCADAEITFESNPDSITREKLRVLRDHG--VNRISFGAQ 127

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSV-RPDIAISSDFIVGFPGETDDDFRATMDLVD 355
           +  D +L+++ R H      + +   R +  P + I  D + G P +T  D   +++ V 
Sbjct: 128 AFQDHLLQAIGRAHLRDAIEEAVWAARDLGFPHVNI--DLMFGLPDQTLHDVAESVEAVL 185

Query: 356 KIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++      ++      GTP +   E
Sbjct: 186 RLPVDHVSAYWLKIEPGTPFAKWHE 210


>gi|256825009|ref|YP_003148969.1| coproporphyrinogen III oxidase, anaerobic [Kytococcus sedentarius
           DSM 20547]
 gi|256688402|gb|ACV06204.1| coproporphyrinogen III oxidase, anaerobic [Kytococcus sedentarius
           DSM 20547]
          Length = 411

 Score = 60.0 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 40/212 (18%), Positives = 77/212 (36%), Gaps = 16/212 (7%)

Query: 186 CDKFCTFCVVPYTR----GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD 241
           C   C +C          G E   SL   VD     +D  V  +T  G  +       + 
Sbjct: 38  CSVRCGYCDFNTYTLTELGDETGASLDTWVDGVAAELDLAVRVLTADGGALPVVDTVFVG 97

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIK-------AHGDLDVLMPYLHLP 294
           G   +       L     +VR R+  +   +++            A G  +     + + 
Sbjct: 98  GGTPSL-LGAEDLGRALEVVRERFAVAEDLEVTTEANPDQVDEEFAWGLAEAGYTRMSVG 156

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           +QS    +L +++R H      + ++  R+    +A+S D I G PGE+  D+RA+++  
Sbjct: 157 MQSAVPHVLATLDRTHDPANVERAVEAGRAA--GLAVSVDLIHGTPGESLVDWRASVEAA 214

Query: 355 DKIGYAQAFSFKYSPRLGTPGSNM--LEQVDE 384
             +      ++  +   GT         ++ E
Sbjct: 215 IALRPDHVSAYALTIEEGTALHRRVARGELPE 246


>gi|148653805|ref|YP_001280898.1| hypothetical protein PsycPRwf_2008 [Psychrobacter sp. PRwf-1]
 gi|148572889|gb|ABQ94948.1| Radical SAM N-terminal domain protein [Psychrobacter sp. PRwf-1]
          Length = 817

 Score = 60.0 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 42/264 (15%), Positives = 87/264 (32%), Gaps = 35/264 (13%)

Query: 151 DTDYSVEDKFERLSIVDGGYNR---KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRS 206
           + DY  +  + R+     G  R      +   + I  GC   CTFC +    G  I +RS
Sbjct: 414 EMDYVFDLPYARVPHPSYGKARIPAFDMIKFSVNIMRGCFGGCTFCSITEHEGRIIQNRS 473

Query: 207 LSQVVDEARKLIDNGVCEITLL----GQNVNAWRGKGLD--------------------- 241
              ++ E   + D       ++    G   N +R    D                     
Sbjct: 474 EESILREVEAIRDTAPNFTGVISDLGGPTANMYRLSCKDEAIEKNCRKPSCVYPDICDNL 533

Query: 242 -GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL--DVLMPYLHLPVQSG 298
             +    + L     +IKG+ ++   +    D++    +   +L    +  YL +  +  
Sbjct: 534 LTDHSNLTKLYRKARDIKGIKKILIASGLRYDLAVKDPEYVKELVTHHVGGYLKIAPEHS 593

Query: 299 SDRILKSMNRRH--TAYEYRQIIDRI-RSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
              +L  M +    +   ++Q+ ++  +    +  +   FI   PG TD+D       + 
Sbjct: 594 ETNVLSKMMKPGMGSYDTFKQMFEQYSQEAGKEQYLIPYFIAAHPGTTDEDMMNLALWLK 653

Query: 356 KIGYAQAFSFKYSPRLGTPGSNML 379
           +  +       + P      + M 
Sbjct: 654 RNDFRTDQVQAFYPSPMATATTMY 677


>gi|260599980|ref|YP_003212551.1| coproporphyrinogen III oxidase [Cronobacter turicensis z3032]
 gi|260219157|emb|CBA34512.1| Oxygen-independent coproporphyrinogen-III oxidase [Cronobacter
           turicensis z3032]
          Length = 485

 Score = 60.0 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 46/247 (18%), Positives = 92/247 (37%), Gaps = 20/247 (8%)

Query: 174 RGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVN 233
           R ++ ++ I   C K C FC        +  +   Q +D   + I          G++V+
Sbjct: 79  RPLSLYVHIPF-CHKLCYFCGCNKIVTRQQHK-ADQYLDVLEQEI--IHRAPLFAGRHVS 134

Query: 234 AWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL------ 287
                   G           +S + GL+R  +  +   ++S  +     +LDVL      
Sbjct: 135 QLHW----GGGTPTYLSKAQISRLMGLLRANFEFNDDAEISIEVDPREIELDVLDHLHAE 190

Query: 288 -MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS-DFIVGFPGETDD 345
               L + VQ  +  + + +NR         +I R R V      ++ D I G P +T +
Sbjct: 191 GFRRLSMGVQDFNKEVQRLVNREQDEDFIFALIKRAREV--GFTSANIDLIYGLPKQTPE 248

Query: 346 DFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVS 404
            F  T+  V ++   +   F Y+       +   +++ D     ++L  LQ+ ++    +
Sbjct: 249 SFAFTLQRVAELNPDRLSVFNYAHLPTLFAAQRKIKEADLPSAQQKLDILQQTIQSLTHA 308

Query: 405 FNDACVG 411
                +G
Sbjct: 309 GYQ-FIG 314


>gi|160334172|gb|ABX24496.1| putative radical SAM protein [Streptomyces cacaoi subsp. asoensis]
          Length = 469

 Score = 60.0 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 28/178 (15%), Positives = 61/178 (34%), Gaps = 13/178 (7%)

Query: 183 QEGCDKFCTFCVV-PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD 241
             GC   C++C V P     E   ++ + V+   +       E         A+      
Sbjct: 222 ARGCPIGCSYCEVHPIFGRKERRLTVERTVEYIEQSFRTASFEYV-------AFYAPTFT 274

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
            ++    DL   L+   G        +    + + L++A G        + + +++    
Sbjct: 275 LDRRWTMDLCERLTA-DGARFPWKCATTMHHLDEDLVRAMGRAG--CVRISVGLETLDPH 331

Query: 302 IL-KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
                   +H + +  + +      +  I ++   IVG PG + +  R T+  V  +G
Sbjct: 332 GHGALPRSKHKSQQDLENLAGW-CAQAGIELNCFVIVGLPGTSVEGVRHTIATVQALG 388


>gi|123440427|ref|YP_001004421.1| coproporphyrinogen III oxidase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122087388|emb|CAL10169.1| oxygen-independent coproporphyrinogen III oxidase [Yersinia
           enterocolitica subsp. enterocolitica 8081]
          Length = 457

 Score = 60.0 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 42/246 (17%), Positives = 87/246 (35%), Gaps = 16/246 (6%)

Query: 173 KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEI--TLLGQ 230
           +R ++ ++ I   C K C FC        +  +   + +    K I           + Q
Sbjct: 50  QRPLSLYVHIPF-CHKLCYFCGCNKLVTRQQHK-ADEYLAVLEKEIRQRAALFAGRQVSQ 107

Query: 231 NVNAWRGKGLDGEKCTFSDLLYSLSE----IKGLVRLRYTTSHPRDMSDCLIKAHGDLDV 286
            ++   G      K   + L+  L E    + G  +       PR++   ++        
Sbjct: 108 -MHWGGGTPTYLNKTQITHLMNLLRENFDFLPGAEQSIEV--DPREIELDVLDHLRAEG- 163

Query: 287 LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDD 346
               L + VQ  +  + + +NR         +I R +++  + + + D I G P +T + 
Sbjct: 164 -FNRLSMGVQDFNKEVQRLVNREQDEDFIFALIARAKALGFN-STNIDLIYGLPKQTPES 221

Query: 347 FRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSF 405
           F  T+  V ++   +   F Y+       +   ++  D     +RL  LQ  +     S 
Sbjct: 222 FAFTLKRVAELNPDRLSVFNYAHLPSLFAAQRKIKDADLPTAEQRLDILQHTISFLTESG 281

Query: 406 NDACVG 411
               +G
Sbjct: 282 YQ-FIG 286


>gi|78224164|ref|YP_385911.1| radical SAM family protein [Geobacter metallireducens GS-15]
 gi|78195419|gb|ABB33186.1| Radical SAM [Geobacter metallireducens GS-15]
          Length = 504

 Score = 60.0 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 57/326 (17%), Positives = 102/326 (31%), Gaps = 35/326 (10%)

Query: 57  NSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEE 116
           + +  AD++ ++   I+  A   +++   R R L          +  V  G +     EE
Sbjct: 61  SDLAWADMVFVSAMIIQRDAVRDLFA---RCRTL---------GVTTVAGGPLFTTAPEE 108

Query: 117 ILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGV 176
                P  + +V  +     P  LE    G        S      R  +           
Sbjct: 109 F----PEADHLVLGEAELTFPPFLEDLAAGHAQRSYTASGRADLTRTPLPRWELLDIGDY 164

Query: 177 TAF-LTIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVCEITLLGQNVNA 234
            A  +    GC   C FC +    G    ++S  Q+V E   L   G         +   
Sbjct: 165 AAMNIQYSRGCPFDCEFCDITQLFGRRPRTKSREQLVAELDSLHIRGWKGGVFFVDDNFI 224

Query: 235 WRGKGLDGEKCTFSDLLYSLSEIKGLVRLR-YTTSHPRDMSDCL----IKAHGDLDVLMP 289
                 D  K     L   ++  +   R   + T    D++D      +        +  
Sbjct: 225 G-----DRNKLKRELLPTIIAWQEAHGRPFSFFTESSIDLADDPQLMALMVEAGFTEVFV 279

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV-RPDIAISSDFIVGFPGETDDDFR 348
            +  P + G D   K  NR       R +++ ++ + R  + +   FIVGF  +    F 
Sbjct: 280 GIETPHEEGLDESGKVQNR------NRDLLESVKRLQRAGLQVQGGFIVGFDSDPASIFE 333

Query: 349 ATMDLVDKIGYAQAFSFKYSPRLGTP 374
             +  + + G   A     +   GT 
Sbjct: 334 KQIRFIQESGIVTAMVGMLTALRGTK 359


>gi|33864042|ref|NP_895602.1| lipoyl synthase [Prochlorococcus marinus str. MIT 9313]
 gi|47115733|sp|Q7V507|LIPA1_PROMM RecName: Full=Lipoyl synthase 1; AltName: Full=Lip-syn 1; AltName:
           Full=Lipoate synthase 1; AltName: Full=Lipoic acid
           synthase 1; AltName: Full=Sulfur insertion protein lipA1
 gi|33635626|emb|CAE21950.1| lipoic acid synthetase [Prochlorococcus marinus str. MIT 9313]
          Length = 294

 Score = 60.0 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 33/198 (16%), Positives = 69/198 (34%), Gaps = 11/198 (5%)

Query: 175 GVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA 234
           G   FL +  GC + C +C + + +    S   ++    +  +    +  + +   N   
Sbjct: 53  GTATFLIMGPGCTRACPYCDIDFDKSP-RSLDPTEPERLSEAVAQMNLRHVVITSVN--- 108

Query: 235 WRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP 294
            R    DG    F   + ++ +   L  +           D L K  G    ++ +    
Sbjct: 109 -RDDLSDGGASQFVACIEAIRQRSPLTTIELLIPDFNGNWDALAKVMGAAPEVLNHNIET 167

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           V     R+ K    +       +++ ++R   P +   S  +VG  GETD +    ++ +
Sbjct: 168 V----PRLYKRARPQADYMRSLELLYQVRQGWPKVYSKSGLMVGL-GETDAEVIEVLEDL 222

Query: 355 DKIGYAQAFSFKY-SPRL 371
            +         +Y SP  
Sbjct: 223 RRHRVDIVTIGQYLSPSP 240


>gi|294782047|ref|ZP_06747373.1| oxygen-independent coproporphyrinogen III oxidase [Fusobacterium
           sp. 1_1_41FAA]
 gi|294480688|gb|EFG28463.1| oxygen-independent coproporphyrinogen III oxidase [Fusobacterium
           sp. 1_1_41FAA]
          Length = 342

 Score = 60.0 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 29/172 (16%), Positives = 55/172 (31%), Gaps = 14/172 (8%)

Query: 174 RGVTAFLTIQE-GCDKFCTFCVVPYTRGIEISRSLSQVVDEA----RKLIDNGVCEITLL 228
           +     + I   GC   C FC      G E   SL  + +      + L  N + E+   
Sbjct: 2   KHYNIPVFISHFGCPNACVFCNQKKINGRETDVSLDDLKNIIDSYLKTLPKNSIKEVAFF 61

Query: 229 GQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLM 288
           G       G  ++ +K     +   +           T     D    ++         +
Sbjct: 62  GGTFT---GISMELQKQYLEVVKKYIDNADVEGVRISTRPECIDD--EILTQLKKYG--V 114

Query: 289 PYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFP 340
             + L +QS  D +LK+  R +     ++  D I+       +    ++G P
Sbjct: 115 KTIELGIQSLDDEVLKATGRHYNYEIVKKSCDLIKKY--GFTLGVQLMIGLP 164


>gi|224368674|ref|YP_002602836.1| radical SAM domain protein (Fe-S oxidoreductase) [Desulfobacterium
           autotrophicum HRM2]
 gi|223691390|gb|ACN14673.1| radical SAM domain protein (Fe-S oxidoreductase) [Desulfobacterium
           autotrophicum HRM2]
          Length = 523

 Score = 60.0 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 59/333 (17%), Positives = 101/333 (30%), Gaps = 38/333 (11%)

Query: 80  VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL 139
            +     +  L       G    + + G       +EIL     V+ +   +  + L EL
Sbjct: 96  FWEHTPHLFTLFTHLRSRGFTGHINLFGFFPTLVFQEILTTQTAVDSIAVGEFEHTLVEL 155

Query: 140 LERARFGKRV-----------VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTI--QEGC 186
                 GK             V    + + +    +        +  +   ++I    GC
Sbjct: 156 AATLEQGKDFGRIPGLAQRDNVLMPGAFQSRPPEKNPDIFPAPLRPSLEGTVSILASRGC 215

Query: 187 DKFCTFCVVPYTRGI---EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
              C+FC VP           R+  ++  E + L++ G  E   +  N     G G  G+
Sbjct: 216 YNHCSFCPVPSFYNQGPLWRGRTPQEIAQEMQTLVEKGAKEFYFVDPNF---IGPGKKGK 272

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHL--PVQSGSDR 301
                     + ++ GL++              L     D  V   +  L   ++SGS+ 
Sbjct: 273 --------ERILKLMGLIKPMKIHFGMETRPSDLDDEILDHLVASGFTSLLMGIESGSET 324

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY-- 359
           IL  +N+     +  Q I   R  R  I     F++     T  D R  +D +       
Sbjct: 325 ILGKINKSTGPSQGAQAISLCR--RHGIEPEVGFLMFVQDATLPDLRNNIDFLMANNLLD 382

Query: 360 -----AQAFSFKYSPRLGTPGSNMLEQVDENVK 387
                A           GT      EQ    VK
Sbjct: 383 RLERTANLLCHCQIVLKGTAAYTQFEQEGRLVK 415


>gi|150010330|ref|YP_001305073.1| coproporphyrinogen III oxidase [Parabacteroides distasonis ATCC
           8503]
 gi|149938754|gb|ABR45451.1| coproporphyrinogen III oxidase [Parabacteroides distasonis ATCC
           8503]
          Length = 385

 Score = 60.0 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 35/230 (15%), Positives = 74/230 (32%), Gaps = 14/230 (6%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C K C +C   +    E+      +    +++            + +    G     ++ 
Sbjct: 21  CAKRCLYCD--FFSNTEMKYKEPYINALIKEMELRKGYIGNEALETIYFGGGTPSQLDEK 78

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPR--DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
            F  +  ++  +  +      T      DM    +    +       + + VQS     L
Sbjct: 79  DFGKIFEAIYRLFDVAEQAEITLEANPDDMKREYVSLLRNYP--FNRVSMGVQSFHPEDL 136

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIA-ISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           + +NRRH   +  + ++  +     I  IS D I G P +T   +   +    ++     
Sbjct: 137 RFLNRRHDREQAIKAVELCKEY--GITNISIDLIYGLPNQTKQAWEENLRQAIRLDVPHL 194

Query: 363 FSFKYSPRLGTPGSNMLE-----QVDENVKAERLLCLQKKLREQQVSFND 407
            ++      GT    ++E      VDE +       L  +L E      +
Sbjct: 195 SAYHLIYEEGTALYKLMEAGKVTPVDEELSVSFFSTLIDRLAEAGYLHYE 244


>gi|298504328|gb|ADI83051.1| radical SAM domain iron-sulfur cluster-binding oxidoreductase
           [Geobacter sulfurreducens KN400]
          Length = 502

 Score = 60.0 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 34/213 (15%), Positives = 71/213 (33%), Gaps = 21/213 (9%)

Query: 158 DKFERLSIVDGGYNRKRGVTAFLTIQEGCD-KFCTFCVVPYTRGIEISRSLSQVVDEARK 216
           D       +        G+    +   GC    C+FC           R++ +V+ +   
Sbjct: 231 DVPPVYDPLPLHDYLSPGLVLPYSAAGGCYWNRCSFCPERAEGNAYRPRAVQRVLADLET 290

Query: 217 LIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDC 276
           L+      +  L  N  +             S L    +   G+    +     +     
Sbjct: 291 LVSRHQPALLHLLDNAVSP------------SLLQGMAAAPPGVPWYGFARVDEQLADPG 338

Query: 277 LIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFI 336
             +       +M  L L ++SG   +L  +++        + +  +R+    IA+ +  +
Sbjct: 339 FCRTLRRSGCVM--LKLGLESGDQGVLDRLHKGIDLATAARALRSLRAA--GIAVYAYLL 394

Query: 337 VGFPGETDDDFRATMDLV----DKIGYAQAFSF 365
            G P ET++  R T+  V    ++IG+     F
Sbjct: 395 FGTPAETEEAARRTLAFVAEHREEIGFLNLAVF 427


>gi|237740803|ref|ZP_04571284.1| oxygen-independent coproporphyrinogen III oxidase [Fusobacterium
           sp. 2_1_31]
 gi|229422820|gb|EEO37867.1| oxygen-independent coproporphyrinogen III oxidase [Fusobacterium
           sp. 2_1_31]
          Length = 348

 Score = 60.0 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 29/172 (16%), Positives = 55/172 (31%), Gaps = 14/172 (8%)

Query: 174 RGVTAFLTIQE-GCDKFCTFCVVPYTRGIEISRSLSQVVDEA----RKLIDNGVCEITLL 228
           +     + I   GC   C FC      G E   SL  + +      + L  N + E+   
Sbjct: 2   KHYNIPVFISHFGCPNACVFCNQKKINGRETDVSLDDLKNIIDSYLKTLPKNSIKEVAFF 61

Query: 229 GQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLM 288
           G       G  ++ +K     +   +           T     D    ++         +
Sbjct: 62  GGTFT---GISMELQKQYLEVVKKYIDNADVEGVRISTRPECIDD--EILTQLKKYG--V 114

Query: 289 PYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFP 340
             + L +QS  D +LK+  R +     ++  D I+       +    ++G P
Sbjct: 115 KTIELGIQSLDDEVLKATGRHYDYEIVKKSCDLIKKY--GFTLGVQLMIGLP 164


>gi|91786224|ref|YP_547176.1| lipoyl synthase [Polaromonas sp. JS666]
 gi|91695449|gb|ABE42278.1| lipoic acid synthetase [Polaromonas sp. JS666]
          Length = 357

 Score = 60.0 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 32/221 (14%), Positives = 78/221 (35%), Gaps = 12/221 (5%)

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
           + +  +  +    E  S  + G    +G   F+ + + C + C FC V + R   +   +
Sbjct: 83  KQILRENKLNTVCEEASCPNIGECFGKGTATFMIMGDKCTRRCPFCDVGHGRPDPL--DV 140

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
           ++  + A+ +    +  + +   +    R    DG    F + +  + E+     +    
Sbjct: 141 NEPENLAKTIAALRLKYVVITSVD----RDDLRDGGSGHFVECIQKIRELSPGTTIEILV 196

Query: 268 SHPRDMSDCLIKAH-GDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
              R   D  ++        +M +        + R+ K             ++ + +++ 
Sbjct: 197 PDFRGRDDRALEILKAAPPDVMNHNL----ETAPRLYKEARPGSDYQFSLNLLKKFKALH 252

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           P++   S  +VG  GETD++    M  +           +Y
Sbjct: 253 PNVPTKSGIMVGL-GETDEEILQVMRDMRTHNIDMLTIGQY 292


>gi|169797621|ref|YP_001715414.1| hypothetical protein ABAYE3690 [Acinetobacter baumannii AYE]
 gi|301510899|ref|ZP_07236136.1| hypothetical protein AbauAB05_04951 [Acinetobacter baumannii AB058]
 gi|332865623|ref|ZP_08436456.1| uncharacterized radical SAM protein YgiQ [Acinetobacter baumannii
           6013113]
 gi|169150548|emb|CAM88456.1| conserved hypothetical protein [Acinetobacter baumannii AYE]
 gi|332735212|gb|EGJ66290.1| uncharacterized radical SAM protein YgiQ [Acinetobacter baumannii
           6013113]
          Length = 792

 Score = 60.0 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 47/264 (17%), Positives = 85/264 (32%), Gaps = 35/264 (13%)

Query: 151 DTDYSVEDKFERLSIV---DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRS 206
           + DY  +  + RL      D  +     +   + I  GC   CTFC +    G  I +RS
Sbjct: 386 EMDYVFDLPYARLPHPAYGDARFPAFDMIKFSVNIMRGCFGGCTFCSITEHEGRIIQNRS 445

Query: 207 LSQVVDEARKLIDNGVCEITLLGQ------NVNAWRGKGLDGEK---------------- 244
              ++ E  K+ D       ++        N+     K  + EK                
Sbjct: 446 EDSILREIEKIRDTAPNFTGIISDLGGPTANMYRLHCKDPEIEKNCRKPSCVYPGVCQNL 505

Query: 245 ----CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL--DVLMPYLHLPVQSG 298
                    L      IKG+ ++   +    D++    +   +L    +  YL +  +  
Sbjct: 506 HTDHAPLVQLYRKARAIKGVKKILIGSGLRYDLAVLNPEYVKELVQHHVGGYLKIAPEHT 565

Query: 299 SDRILKSMNRR--HTAYEYRQIIDRI-RSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
               L  M +    T   ++Q+ DR  +    +  +   FI   PG +D D       + 
Sbjct: 566 EQGPLSKMMKPGIGTYDRFKQMFDRFSKEAGKEQYLIPYFIAAHPGTSDYDMMHLAIWLK 625

Query: 356 KIGYAQAFSFKYSPRLGTPGSNML 379
           K G+       + P      + M 
Sbjct: 626 KNGFRADQVQTFYPSPMATATTMY 649


>gi|310825320|ref|YP_003957678.1| sam domain-containing protein [Stigmatella aurantiaca DW4/3-1]
 gi|309398392|gb|ADO75851.1| SAM domain protein [Stigmatella aurantiaca DW4/3-1]
          Length = 485

 Score = 60.0 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 41/197 (20%), Positives = 64/197 (32%), Gaps = 21/197 (10%)

Query: 182 IQEGCDKFCTFCVVPYTRGIEIS--RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
            Q GC   CTFC    +     +    + ++ +E       G  EI +L           
Sbjct: 243 TQRGCPYRCTFCQHRESGARLRNTRFPMQRLREEIALFARAGTQEIDVLD---------- 292

Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
                  F+     L  ++ LVR R            L+K   +   L   L++  + G 
Sbjct: 293 -----PIFNLGQEPLLVLEELVRQRIQARISLQCRFELLKP--EFLELCTQLNVFPEFGL 345

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRS--VRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
             I     R          ++       R  IA     I G PG+T + F AT++   K 
Sbjct: 346 QTIHTEEGRLVQRQNDMTRVETAMGELARRGIAYMVTLIYGLPGQTLESFHATVEFCLKR 405

Query: 358 GYAQAFSFKYSPRLGTP 374
           G     +F  +   GT 
Sbjct: 406 GVHVVRAFPLNLLRGTE 422


>gi|260551124|ref|ZP_05825328.1| Fe-S oxidoreductase [Acinetobacter sp. RUH2624]
 gi|260405891|gb|EEW99379.1| Fe-S oxidoreductase [Acinetobacter sp. RUH2624]
          Length = 792

 Score = 60.0 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 47/264 (17%), Positives = 85/264 (32%), Gaps = 35/264 (13%)

Query: 151 DTDYSVEDKFERLSIV---DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRS 206
           + DY  +  + RL      D  +     +   + I  GC   CTFC +    G  I +RS
Sbjct: 386 EMDYVFDLPYARLPHPAYGDARFPAFDMIKFSVNIMRGCFGGCTFCSITEHEGRIIQNRS 445

Query: 207 LSQVVDEARKLIDNGVCEITLLGQ------NVNAWRGKGLDGEK---------------- 244
              ++ E  K+ D       ++        N+     K  + EK                
Sbjct: 446 EDSILREIEKIRDTAPNFTGIISDLGGPTANMYRLHCKDPEIEKNCRKPSCVYPGVCQNL 505

Query: 245 ----CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL--DVLMPYLHLPVQSG 298
                    L      IKG+ ++   +    D++    +   +L    +  YL +  +  
Sbjct: 506 HTDHAPLVQLYRKARAIKGVKKILIGSGLRYDLAVLNPEYVKELVQHHVGGYLKIAPEHT 565

Query: 299 SDRILKSMNRR--HTAYEYRQIIDRI-RSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
               L  M +    T   ++Q+ DR  +    +  +   FI   PG +D D       + 
Sbjct: 566 EQGPLSKMMKPGIGTYDRFKQMFDRFSKEAGKEQYLIPYFIAAHPGTSDYDMMHLAIWLK 625

Query: 356 KIGYAQAFSFKYSPRLGTPGSNML 379
           K G+       + P      + M 
Sbjct: 626 KNGFRADQVQTFYPSPMATATTMY 649


>gi|255658300|ref|ZP_05403709.1| oxygen-independent coproporphyrinogen III oxidase 2 [Mitsuokella
           multacida DSM 20544]
 gi|260849617|gb|EEX69624.1| oxygen-independent coproporphyrinogen III oxidase 2 [Mitsuokella
           multacida DSM 20544]
          Length = 515

 Score = 60.0 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 45/268 (16%), Positives = 96/268 (35%), Gaps = 15/268 (5%)

Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
            +++ER +      +    V        +     + ++ V+ ++ I   C   C +C  P
Sbjct: 149 EDIIERLQSDYACSEAKARVIVPMAFRQLPFLAQSDEKTVSVYVGIPF-CLTRCLYCSFP 207

Query: 197 Y--TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL 254
                G +       V+++        +       QN+    G         F+++L  +
Sbjct: 208 SNILPGKKRIAEFMTVLEKDLLAAKKAIDHYGFRVQNIYVGGGTPTSLPDEAFAEMLNMV 267

Query: 255 SEI---KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
                   +V        P  ++   I+    L   +  + +  Q+   + L  + R+HT
Sbjct: 268 YNAFYGPSIVEFTVEAGRPDSITPAKIEMMKRLS--VSRVSVNPQTMQAKTLHRIGRQHT 325

Query: 312 AYEYRQIIDRIRSV-RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370
             +   +   +R    P I +  D I+G PGET +D R TM+ V  +G         + +
Sbjct: 326 PEDVVTMFHALREAGIPHINM--DLILGLPGETAEDVRDTMEKVTALGPDDITLHALALK 383

Query: 371 LGTPGS-NMLEQ---VDENVKAERLLCL 394
            G+     M +Q   +  + +  R+  +
Sbjct: 384 RGSRLRLLMEDQHVELPSDEETRRMSEV 411


>gi|213155587|ref|YP_002317632.1| radical SAM N-terminal domain protein [Acinetobacter baumannii
           AB0057]
 gi|301346034|ref|ZP_07226775.1| hypothetical protein AbauAB0_07305 [Acinetobacter baumannii AB056]
 gi|301596203|ref|ZP_07241211.1| hypothetical protein AbauAB059_10324 [Acinetobacter baumannii
           AB059]
 gi|213054747|gb|ACJ39649.1| radical SAM N-terminal domain protein [Acinetobacter baumannii
           AB0057]
          Length = 792

 Score = 60.0 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 47/264 (17%), Positives = 85/264 (32%), Gaps = 35/264 (13%)

Query: 151 DTDYSVEDKFERLSIV---DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRS 206
           + DY  +  + RL      D  +     +   + I  GC   CTFC +    G  I +RS
Sbjct: 386 EMDYVFDLPYARLPHPAYGDARFPAFDMIKFSVNIMRGCFGGCTFCSITEHEGRIIQNRS 445

Query: 207 LSQVVDEARKLIDNGVCEITLLGQ------NVNAWRGKGLDGEK---------------- 244
              ++ E  K+ D       ++        N+     K  + EK                
Sbjct: 446 EDSILREIEKIRDTAPNFTGIISDLGGPTANMYRLHCKDPEIEKNCRKPSCVYPGVCQNL 505

Query: 245 ----CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL--DVLMPYLHLPVQSG 298
                    L      IKG+ ++   +    D++    +   +L    +  YL +  +  
Sbjct: 506 HTDHAPLVQLYRKARAIKGVKKILIGSGLRYDLAVLNPEYVKELVQHHVGGYLKIAPEHT 565

Query: 299 SDRILKSMNRR--HTAYEYRQIIDRI-RSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
               L  M +    T   ++Q+ DR  +    +  +   FI   PG +D D       + 
Sbjct: 566 EQGPLSKMMKPGIGTYDRFKQMFDRFSKEAGKEQYLIPYFIAAHPGTSDYDMMHLAIWLK 625

Query: 356 KIGYAQAFSFKYSPRLGTPGSNML 379
           K G+       + P      + M 
Sbjct: 626 KNGFRADQVQTFYPSPMATATTMY 649


>gi|115933434|ref|XP_798402.2| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
 gi|115960126|ref|XP_001188042.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
          Length = 440

 Score = 60.0 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 37/202 (18%), Positives = 72/202 (35%), Gaps = 14/202 (6%)

Query: 186 CDKFCTFC-----VVPYT-RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
           C K CT+C     V P   +    +  + +     +      V  I   G       G  
Sbjct: 42  CQKRCTYCNFNKYVTPTIDQNRIRACLVREAQTLIKLSGVKQVNSIFFGG-------GTP 94

Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
              E      ++ ++ E+  +      +      S  + K        +  L L +Q+  
Sbjct: 95  SLAEPRVLEGVIEAVKELVAMPTDVEISMEANPTSVEMKKLEDFKSAGVNRLSLGIQALD 154

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
              LK++ R HT  +    I   R + PD  +S D I G P +T + + A ++ + ++  
Sbjct: 155 SNDLKTLGREHTVGQSLTCIHEARKLFPD-RLSIDIIFGRPSQTLNSWEAELEQILQVCD 213

Query: 360 AQAFSFKYSPRLGTPGSNMLEQ 381
           +    ++ +   GT      +Q
Sbjct: 214 SHISLYQLTLEPGTLLYKFDQQ 235


>gi|315187517|gb|EFU21273.1| conserved hypothetical protein [Spirochaeta thermophila DSM 6578]
          Length = 317

 Score = 60.0 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 41/212 (19%), Positives = 73/212 (34%), Gaps = 21/212 (9%)

Query: 164 SIVDGGYNRKRGVTAFLTIQEG--CDKF-------CTFCVVPYTRGIEIS--RSLSQVVD 212
           S       R  GV   + +  G  C          C FC V  +R   +   R L + V 
Sbjct: 11  SFSRYLKERFGGVVYRVGVDAGFSCPHRDSREGRGCAFCDVEGSRAPYLGDVRGLEEQVR 70

Query: 213 EARKLIDN--GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270
            A+  +    G     L  Q      G   +  +   +     L+  +G       ++ P
Sbjct: 71  RAKGFLKARYGASRFLLYFQAYTNTYGPVEELRRVYEA----GLAAGEGEWVGLIVSTRP 126

Query: 271 RDMSDCLIKAHGDLDV--LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
             + D ++          L  ++ L +QS  D  L+ + R HT  ++   +   R+    
Sbjct: 127 DYLPDEVLDLLASYKARGLEVWVELGLQSAFDETLRRIRRGHTVAQWEDAVR--RAGEAG 184

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
           +  ++  I G PGE  + F  +   V + G  
Sbjct: 185 LLRAAHLIAGLPGEGREAFWESARFVAESGVE 216


>gi|184156523|ref|YP_001844862.1| hypothetical protein ACICU_00203 [Acinetobacter baumannii ACICU]
 gi|239502140|ref|ZP_04661450.1| hypothetical protein AbauAB_07487 [Acinetobacter baumannii AB900]
 gi|260556429|ref|ZP_05828648.1| Fe-S oxidoreductase [Acinetobacter baumannii ATCC 19606]
 gi|332875008|ref|ZP_08442855.1| uncharacterized radical SAM protein YgiQ [Acinetobacter baumannii
           6014059]
 gi|183208117|gb|ACC55515.1| Fe-S oxidoreductase [Acinetobacter baumannii ACICU]
 gi|193076066|gb|ABO10664.2| hypothetical protein A1S_0183 [Acinetobacter baumannii ATCC 17978]
 gi|260410484|gb|EEX03783.1| Fe-S oxidoreductase [Acinetobacter baumannii ATCC 19606]
 gi|332736818|gb|EGJ67798.1| uncharacterized radical SAM protein YgiQ [Acinetobacter baumannii
           6014059]
          Length = 792

 Score = 60.0 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 47/264 (17%), Positives = 85/264 (32%), Gaps = 35/264 (13%)

Query: 151 DTDYSVEDKFERLSIV---DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRS 206
           + DY  +  + RL      D  +     +   + I  GC   CTFC +    G  I +RS
Sbjct: 386 EMDYVFDLPYARLPHPAYGDARFPAFDMIKFSVNIMRGCFGGCTFCSITEHEGRIIQNRS 445

Query: 207 LSQVVDEARKLIDNGVCEITLLGQ------NVNAWRGKGLDGEK---------------- 244
              ++ E  K+ D       ++        N+     K  + EK                
Sbjct: 446 EDSILREIEKIRDTAPNFTGIISDLGGPTANMYRLHCKDPEIEKNCRKPSCVYPGVCQNL 505

Query: 245 ----CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL--DVLMPYLHLPVQSG 298
                    L      IKG+ ++   +    D++    +   +L    +  YL +  +  
Sbjct: 506 HTDHAPLVQLYRKARAIKGVKKILIGSGLRYDLAVLNPEYVKELVQHHVGGYLKIAPEHT 565

Query: 299 SDRILKSMNRR--HTAYEYRQIIDRI-RSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
               L  M +    T   ++Q+ DR  +    +  +   FI   PG +D D       + 
Sbjct: 566 EQGPLSKMMKPGIGTYDRFKQMFDRFSKEAGKEQYLIPYFIAAHPGTSDYDMMHLAIWLK 625

Query: 356 KIGYAQAFSFKYSPRLGTPGSNML 379
           K G+       + P      + M 
Sbjct: 626 KNGFRADQVQTFYPSPMATATTMY 649


>gi|29654568|ref|NP_820260.1| lipoyl synthase [Coxiella burnetii RSA 493]
 gi|161829883|ref|YP_001597118.1| lipoyl synthase [Coxiella burnetii RSA 331]
 gi|212212351|ref|YP_002303287.1| lipoyl synthase [Coxiella burnetii CbuG_Q212]
 gi|47117199|sp|Q83C63|LIPA_COXBU RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|189046600|sp|A9NDX8|LIPA_COXBR RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|226781789|sp|B6IZL4|LIPA_COXB2 RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|29541836|gb|AAO90774.1| lipoic acid synthetase [Coxiella burnetii RSA 493]
 gi|161761750|gb|ABX77392.1| lipoic acid synthetase [Coxiella burnetii RSA 331]
 gi|212010761|gb|ACJ18142.1| lipoic acid synthetase [Coxiella burnetii CbuG_Q212]
          Length = 315

 Score = 60.0 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 45/296 (15%), Positives = 101/296 (34%), Gaps = 27/296 (9%)

Query: 114 GEEILRRSPIVNVVVGPQTYYRLPELLE-------RARFGKRVVDTDYSVEDKFERLSIV 166
           G+E L R P+   +    T  R P+ +        +    K+++  ++ V    E  S  
Sbjct: 12  GKEKLSRIPV--KIEATHTPLRKPDWIRIRLSTDSKVSQLKKLLRENHLVT-VCEEASCP 68

Query: 167 DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEIT 226
           +       G   F+ + + C + C+FC V + R   +     + V+ A  +    +  + 
Sbjct: 69  NLNECFGHGTATFMIMGDKCTRRCSFCDVGHGRPDPL--DPEEPVNLANTVSIMSLRYVV 126

Query: 227 LLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGD-LD 285
           +   +    R    DG    ++  + ++ E    +++       R   +  +      L 
Sbjct: 127 ITSVD----RDDLRDGGAQHYAQCINAVREKNPGIKVEVLVPDFRGRMEKALDQLAQGLP 182

Query: 286 VLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDD 345
            +  +        + R+ K             ++   +   P I   S  ++G  GET +
Sbjct: 183 DVFNHNI----ETAPRLYKQARPGADYPWSLALLQTFKKRFPGIPTKSGMMLGL-GETRE 237

Query: 346 DFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQ 401
           +    M  + +    +    +Y     T   +M   VD  V  +    L +  ++ 
Sbjct: 238 EVEMVMRDLRQHEVDRLTLGQY--LQPTR-YHMP--VDRYVTPQEFQELGELAKKL 288


>gi|330503007|ref|YP_004379876.1| coproporphyrinogen III oxidase [Pseudomonas mendocina NK-01]
 gi|328917293|gb|AEB58124.1| coproporphyrinogen III oxidase [Pseudomonas mendocina NK-01]
          Length = 460

 Score = 60.0 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 46/269 (17%), Positives = 95/269 (35%), Gaps = 21/269 (7%)

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC----VVPYTRGIEISR--SL 207
           +     F+ L  +       R ++ ++ I   C   C +C    V+   RG  +     L
Sbjct: 32  HDAIGPFDLLHALRDSRKAGRPLSLYVHIPF-CAHICYYCACNKVITKDRGRALPYLEKL 90

Query: 208 SQVVDEARKLIDNG--VCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            + ++   + ID    + ++   G          L             L +  G   +  
Sbjct: 91  EREIEIVSRYIDKNQPIEQLHFGGGTPTFLSHDELRRLMQHLRQHFNLLDDDSGDYSIEI 150

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
                   +  L++  G        + L VQ     + +++NR  T  E R I++  R++
Sbjct: 151 DPREADWSTMGLLRELG-----FNRVSLGVQDLDPEVQRAVNRLQTLEETRAIVEAARTL 205

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY--SPRLGTPGSNM-LEQV 382
           +   +++ D I G P +T + F  T+  V  +   +   F Y   P    P   +  + +
Sbjct: 206 QFR-SVNIDLIYGLPKQTPERFARTVAEVIALQPDRLSLFNYAHLPERFMPQRRISADDL 264

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVG 411
                A++L  LQ  + +   +     +G
Sbjct: 265 PSP--ADKLAMLQNSIEQLTRAGY-RYIG 290


>gi|325290568|ref|YP_004266749.1| Radical SAM domain protein [Syntrophobotulus glycolicus DSM 8271]
 gi|324965969|gb|ADY56748.1| Radical SAM domain protein [Syntrophobotulus glycolicus DSM 8271]
          Length = 634

 Score = 60.0 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 73/221 (33%), Gaps = 17/221 (7%)

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGV--TAFLTIQEGCDKFCTFCVVPYTR 199
           +   G     T   V+D       VD        V     L +  GC + C FC      
Sbjct: 227 QPSSGAPATVTKAVVQDFSSAYFPVDCIVPYTEAVHDRVMLEVMRGCTRGCRFCQAGMIS 286

Query: 200 GIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258
                R    ++ +A   ID  G  EI+L+  + +        G K     ++  L +  
Sbjct: 287 RPVRERDPELLLQQALASIDKTGYEEISLVSLSTS-----DYSGVKNLLGQMMDRLQDQG 341

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
             V L             L +    +      L    ++G+ R+   +N+  T      +
Sbjct: 342 VSVSLPSLRLDS--FDPDLAREVQKVRK--SGLTFAPEAGTQRLRDVINKGVTEE---DL 394

Query: 319 IDRIRSVRPD--IAISSDFIVGFPGETDDDFRATMDLVDKI 357
           +    +       +I   +++G P ETD+D    ++   K+
Sbjct: 395 LKTAEAAFKGGWSSIKLYYMIGLPTETDEDLDGIVEQARKV 435


>gi|317152424|ref|YP_004120472.1| Radical SAM domain-containing protein [Desulfovibrio aespoeensis
           Aspo-2]
 gi|316942675|gb|ADU61726.1| Radical SAM domain protein [Desulfovibrio aespoeensis Aspo-2]
          Length = 667

 Score = 60.0 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 60/302 (19%), Positives = 106/302 (35%), Gaps = 46/302 (15%)

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
            R L+    K+  D   V+ G + +   + +L     V+  +  +    LP  +E  R G
Sbjct: 76  FRRLRELAGKKSPDTPFVLGGNITKDGNDRLLFDIIGVDYAILGEAETSLPAFVEGLRAG 135

Query: 147 K-----------RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTI------------- 182
           +           R   T   V +KF+RL +                              
Sbjct: 136 REDFHGYDGVIFREKATGQVVRNKFKRLDLKRHKVRPAWHHFDCDYFITMSSFPFMGGGL 195

Query: 183 -------QEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNA 234
                    GC   C FC    + G    R ++ ++DE R LI      ++  L +    
Sbjct: 196 RSMPVLSGRGCVGKCGFC--SPSIGGFRKREIADLIDEIRFLIREYDFDKLCFLNE---- 249

Query: 235 WRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP 294
                   E   F     +L   K         +     +  ++K  G        +   
Sbjct: 250 -MFYPTAREVREFCAAYAALETRKPWFVQVRIDAGLDAETLVMMKEAG-----CIAVSAG 303

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           ++SGSD +L +MN++ TA + R      ++    +  +  FI+G+ GET +D R T+DL+
Sbjct: 304 IESGSDDVLAAMNKKTTAEQIRTFFRNCKAA--GMPSNGTFIIGYDGETAEDLRKTIDLL 361

Query: 355 DK 356
            +
Sbjct: 362 IE 363


>gi|255522665|ref|ZP_05389902.1| coproporphyrinogen III oxidase [Listeria monocytogenes FSL J1-175]
          Length = 363

 Score = 60.0 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 71/198 (35%), Gaps = 10/198 (5%)

Query: 188 KFCTFCVV--PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
             C +C     +  G  +   +  ++ E       G          V    G      + 
Sbjct: 1   HICYYCDFNKVFLEGQPVDEYVDLLIKEMELTAAKGPIAPV---DTVFVGGGTPTTLNEA 57

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
             + L  ++  I  L +    +         L K     D  +  + + VQS ++ +LK 
Sbjct: 58  QIARLCTAIHNILPLKKDIEFSFEANPGDLSLSKLQAMQDHGVNRISMGVQSFNNELLKK 117

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           + R HT  +  Q ++ +R +  +  +S D I   PG+T+ DF+ T+     +        
Sbjct: 118 IGRIHTVKDVYQSVENMRKIGFE-NVSIDLIFSLPGQTEADFQDTLK--QALDLDLPHYS 174

Query: 366 KYS--PRLGTPGSNMLEQ 381
            YS      T   N++++
Sbjct: 175 AYSLIIEPKTIFYNLMQK 192


>gi|215484972|ref|YP_002327213.1| Radical SAM N-terminal family protein [Acinetobacter baumannii
           AB307-0294]
 gi|332851005|ref|ZP_08433140.1| uncharacterized radical SAM protein YgiQ [Acinetobacter baumannii
           6013150]
 gi|213987739|gb|ACJ58038.1| Radical SAM N-terminal family protein [Acinetobacter baumannii
           AB307-0294]
 gi|332730288|gb|EGJ61612.1| uncharacterized radical SAM protein YgiQ [Acinetobacter baumannii
           6013150]
          Length = 786

 Score = 60.0 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 47/264 (17%), Positives = 85/264 (32%), Gaps = 35/264 (13%)

Query: 151 DTDYSVEDKFERLSIV---DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRS 206
           + DY  +  + RL      D  +     +   + I  GC   CTFC +    G  I +RS
Sbjct: 380 EMDYVFDLPYARLPHPAYGDARFPAFDMIKFSVNIMRGCFGGCTFCSITEHEGRIIQNRS 439

Query: 207 LSQVVDEARKLIDNGVCEITLLGQ------NVNAWRGKGLDGEK---------------- 244
              ++ E  K+ D       ++        N+     K  + EK                
Sbjct: 440 EDSILREIEKIRDTAPNFTGIISDLGGPTANMYRLHCKDPEIEKNCRKPSCVYPGVCQNL 499

Query: 245 ----CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL--DVLMPYLHLPVQSG 298
                    L      IKG+ ++   +    D++    +   +L    +  YL +  +  
Sbjct: 500 HTDHAPLVQLYRKARAIKGVKKILIGSGLRYDLAVLNPEYVKELVQHHVGGYLKIAPEHT 559

Query: 299 SDRILKSMNRR--HTAYEYRQIIDRI-RSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
               L  M +    T   ++Q+ DR  +    +  +   FI   PG +D D       + 
Sbjct: 560 EQGPLSKMMKPGIGTYDRFKQMFDRFSKEAGKEQYLIPYFIAAHPGTSDYDMMHLAIWLK 619

Query: 356 KIGYAQAFSFKYSPRLGTPGSNML 379
           K G+       + P      + M 
Sbjct: 620 KNGFRADQVQTFYPSPMATATTMY 643


>gi|156742419|ref|YP_001432548.1| radical SAM domain-containing protein [Roseiflexus castenholzii DSM
           13941]
 gi|156233747|gb|ABU58530.1| Radical SAM domain protein [Roseiflexus castenholzii DSM 13941]
          Length = 590

 Score = 60.0 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 50/268 (18%), Positives = 88/268 (32%), Gaps = 32/268 (11%)

Query: 126 VVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDG-GYNRKRGVTAFLTI-- 182
            + G     R+P L+   R G  +  T     +K   L + D  G    R +  +LT+  
Sbjct: 258 ALAGSGDVSRVPNLI--YRDGNAIRVTARKEPEKIGALPLPDFDGLPLDRYLAPYLTLPL 315

Query: 183 --QEGCDKF-CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
               GC    C FC V Y      S   S+++  A +++           Q++       
Sbjct: 316 LSARGCYFGKCAFCNVGYGEAENFSLMRSEML--AEQMVALHQRYG---AQHI------- 363

Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM----SDCLIKAHGDLDVLMPYLHLPV 295
              ++      L  LS I     +              +  L++           +   +
Sbjct: 364 FFADEALTPRTLRELSMIVQRDCIPVLWGGCARFEKTLTADLLQQM--YRGGCRMILFGL 421

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
           +S S+ I+  M +        +I+    S    I   + F  GFPGET DD + T++ + 
Sbjct: 422 ESASEAIMNRMVKGTKLEHMHRILRE--SAEAGIWNHTFFFFGFPGETLDDAQQTVNFLY 479

Query: 356 KIGYAQAFSF---KYSPRLGTPGSNMLE 380
           +       S     +      P     E
Sbjct: 480 EHR-EHIHSAALGTFLLERDAPAHRFPE 506


>gi|322506391|gb|ADX01845.1| Putative uncharacterized protein [Acinetobacter baumannii 1656-2]
 gi|323516259|gb|ADX90640.1| hypothetical protein ABTW07_0203 [Acinetobacter baumannii
           TCDC-AB0715]
          Length = 786

 Score = 60.0 bits (144), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 47/264 (17%), Positives = 85/264 (32%), Gaps = 35/264 (13%)

Query: 151 DTDYSVEDKFERLSIV---DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRS 206
           + DY  +  + RL      D  +     +   + I  GC   CTFC +    G  I +RS
Sbjct: 380 EMDYVFDLPYARLPHPAYGDARFPAFDMIKFSVNIMRGCFGGCTFCSITEHEGRIIQNRS 439

Query: 207 LSQVVDEARKLIDNGVCEITLLGQ------NVNAWRGKGLDGEK---------------- 244
              ++ E  K+ D       ++        N+     K  + EK                
Sbjct: 440 EDSILREIEKIRDTAPNFTGIISDLGGPTANMYRLHCKDPEIEKNCRKPSCVYPGVCQNL 499

Query: 245 ----CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL--DVLMPYLHLPVQSG 298
                    L      IKG+ ++   +    D++    +   +L    +  YL +  +  
Sbjct: 500 HTDHAPLVQLYRKARAIKGVKKILIGSGLRYDLAVLNPEYVKELVQHHVGGYLKIAPEHT 559

Query: 299 SDRILKSMNRR--HTAYEYRQIIDRI-RSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
               L  M +    T   ++Q+ DR  +    +  +   FI   PG +D D       + 
Sbjct: 560 EQGPLSKMMKPGIGTYDRFKQMFDRFSKEAGKEQYLIPYFIAAHPGTSDYDMMHLAIWLK 619

Query: 356 KIGYAQAFSFKYSPRLGTPGSNML 379
           K G+       + P      + M 
Sbjct: 620 KNGFRADQVQTFYPSPMATATTMY 643


>gi|227820594|ref|YP_002824564.1| coproporphyrinogen III oxidase [Sinorhizobium fredii NGR234]
 gi|227339593|gb|ACP23811.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Sinorhizobium fredii NGR234]
          Length = 382

 Score = 60.0 bits (144), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 30/202 (14%), Positives = 65/202 (32%), Gaps = 16/202 (7%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C   C +C           + + Q        +        L G         G  G   
Sbjct: 14  CAAKCPYC---DFNSHVRHQPVDQP-RFVAAFLQEMASVGALSGPRTVTSIFMG--GGTP 67

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCL-------IKAHGDLDVLMPYLHLPVQSG 298
           +  +     + + G+ R  +      +++           + HG     +  + L VQ+ 
Sbjct: 68  SLMEPATVAAILDGIAR-HWHVPDGIEITMEANPSSVEATRFHGYRAAGVNRVSLGVQAL 126

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           +DR LK + R H   +  + +   R + P ++   D I   P +T +++   +       
Sbjct: 127 NDRDLKFLGRLHNVEDALKAVRLAREIFPRMSF--DLIYARPKQTVEEWERELKEAVSYA 184

Query: 359 YAQAFSFKYSPRLGTPGSNMLE 380
                 ++ +   GTP   + +
Sbjct: 185 VDHLSLYQLTIEEGTPFFGLHK 206


>gi|290976728|ref|XP_002671091.1| [Fe] hydrogenase maturation protein [Naegleria gruberi]
 gi|284084657|gb|EFC38347.1| [Fe] hydrogenase maturation protein [Naegleria gruberi]
          Length = 524

 Score = 60.0 bits (144), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 44/284 (15%), Positives = 88/284 (30%), Gaps = 51/284 (17%)

Query: 137 PELLERARFGKRVVDTDYSVEDKFERL-------SIVDGGYNRKRGVTAFLTIQEGCDKF 189
           PEL +     K  +    ++ED  E+        SI +  Y  K      +     C K 
Sbjct: 144 PELGKPVELTKEQIVNVLNIEDHEEQRALFDYANSITESIYGSKVYFRGIIEFSNVCQKD 203

Query: 190 CTFCVV-PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS 248
           C +C +  + +    +    +++++A    +N    I L    +N       +G      
Sbjct: 204 CNYCGIRKHMQVPRYTMPKEEIIEQAIWAYENHFGSIMLQSGELNT------EGRISMLV 257

Query: 249 DLLYSLSE-------------------IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMP 289
           D++  + +                   +  L R  Y   +       L++       L  
Sbjct: 258 DVIREIKKRTGGGGPGEWNKGLGIALGVGELSRESYQRLYDAGAHRYLLRIETSNPELYS 317

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
            LH              +  H   E ++ ++ +  +       +  ++  P +T  D   
Sbjct: 318 KLHP------------NDENHVWEERKKCLETLMDI--GYQTGTGVMIMIPNQTVQDLAD 363

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTPGSNM----LEQVDENVKAE 389
            +    KIG        Y  + GTP   +       ++E  K E
Sbjct: 364 DLLFFRKIGADMIGMGPYIVQEGTPIGKIWMEQYGHMNEAEKKE 407


>gi|224371149|ref|YP_002605313.1| Fe-S oxidoreductase family protein [Desulfobacterium autotrophicum
           HRM2]
 gi|223693866|gb|ACN17149.1| Fe-S oxidoreductase family protein [Desulfobacterium autotrophicum
           HRM2]
          Length = 304

 Score = 60.0 bits (144), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 44/212 (20%), Positives = 87/212 (41%), Gaps = 19/212 (8%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGK 238
           + +  GC   CTFC +  T+   + + +  + ++ RK  +  G     +  ++ NA+  K
Sbjct: 24  IKVTNGCTHRCTFCSMYLTKKFSMRKDIEDIKNDIRKAREMFGSRVEKIFFEDGNAFVVK 83

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM---SDCLIKAHGDLDVLMPYLHLPV 295
                     +L     +    +R   + +H +D+   SD  +K   D    M Y  + +
Sbjct: 84  SH-----VLIELTRYCYQQHPNLRKVSSYAHVQDILKKSDDDLKRLADAGFTMVY--VGI 136

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFR----ATM 351
           +SG +++LK  N+  T  +Y     +       I  S  F++G  G   +  +     + 
Sbjct: 137 ESGDNQVLKDCNKGATQDDYALAAQKCHQA--GIDWSGIFLLGLAGNDPEKSQRHAVESA 194

Query: 352 DLVDKIGYAQAFSFKYSP--RLGTPGSNMLEQ 381
            L++++       +  SP     TPGS +L Q
Sbjct: 195 KLINRMAPPMPRKWYISPLTLEMTPGSEILAQ 226


>gi|254479169|ref|ZP_05092518.1| radical SAM domain protein [Carboxydibrachium pacificum DSM 12653]
 gi|214034897|gb|EEB75622.1| radical SAM domain protein [Carboxydibrachium pacificum DSM 12653]
          Length = 362

 Score = 60.0 bits (144), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 26/202 (12%), Positives = 69/202 (34%), Gaps = 18/202 (8%)

Query: 175 GVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS--LSQVVDEARKLIDNGVCEITLLGQNV 232
            +   +     C   C +C +               ++++ A++ ++  +  I L     
Sbjct: 58  HLRGLIEFSNYCHNTCFYCGLRGPNKAIKRYRMEPEEIIECAKRGVEMELKTIVLQS--- 114

Query: 233 NAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLH 292
               G+    +  T  +++  + E+   V L       ++    L KA  D         
Sbjct: 115 ----GEDRYYKITTLCNIVEKIKEMDVAVTLSIGELSKKEY-AELKKAGADR------YL 163

Query: 293 LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352
           L +++ +  + + ++   +     + +  +R +     + +  ++G PG+T +     + 
Sbjct: 164 LRIETTNRELYRKLHPGMSYENRLRCLMDLREL--GYEVGTGSLIGLPGQTLEMLADDLL 221

Query: 353 LVDKIGYAQAFSFKYSPRLGTP 374
              KI         + P   TP
Sbjct: 222 FFKKINADMLGIGPFIPCENTP 243


>gi|153207485|ref|ZP_01946185.1| lipoic acid synthetase [Coxiella burnetii 'MSU Goat Q177']
 gi|154706581|ref|YP_001424704.1| lipoyl synthase [Coxiella burnetii Dugway 5J108-111]
 gi|165918955|ref|ZP_02219041.1| lipoic acid synthetase [Coxiella burnetii RSA 334]
 gi|212218680|ref|YP_002305467.1| lipoyl synthase [Coxiella burnetii CbuK_Q154]
 gi|189046599|sp|A9KFW5|LIPA_COXBN RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|226781788|sp|B6J7S3|LIPA_COXB1 RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|120576616|gb|EAX33240.1| lipoic acid synthetase [Coxiella burnetii 'MSU Goat Q177']
 gi|154355867|gb|ABS77329.1| lipoic acid synthetase [Coxiella burnetii Dugway 5J108-111]
 gi|165917352|gb|EDR35956.1| lipoic acid synthetase [Coxiella burnetii RSA 334]
 gi|212012942|gb|ACJ20322.1| lipoic acid synthetase [Coxiella burnetii CbuK_Q154]
          Length = 315

 Score = 60.0 bits (144), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 45/296 (15%), Positives = 101/296 (34%), Gaps = 27/296 (9%)

Query: 114 GEEILRRSPIVNVVVGPQTYYRLPELLE-------RARFGKRVVDTDYSVEDKFERLSIV 166
           G+E L R P+   +    T  R P+ +        +    K+++  ++ V    E  S  
Sbjct: 12  GKEKLSRIPV--KIEATHTPLRKPDWIRIRLSTDSKVSQLKKLLRENHLVT-VCEEASCP 68

Query: 167 DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEIT 226
           +       G   F+ + + C + C+FC V + R   +     + V+ A  +    +  + 
Sbjct: 69  NLNECFGHGTATFMIMGDKCTRRCSFCDVGHGRPDPL--DPEEPVNLANTVSIMSLRYVV 126

Query: 227 LLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGD-LD 285
           +   +    R    DG    ++  + ++ E    +++       R   +  +      L 
Sbjct: 127 ITSVD----RDDLRDGGAQHYAQCINAVREKNPGIKVEVLVPDFRGRMEKALDQLAQGLP 182

Query: 286 VLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDD 345
            +  +        + R+ K             ++   +   P I   S  ++G  GET +
Sbjct: 183 DVFNHNI----ETAPRLYKQARPGADYPWSLALLQTFKKRFPGIPTKSGMMLGL-GETRE 237

Query: 346 DFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQ 401
           +    M  + +    +    +Y     T   +M   VD  V  +    L +  ++ 
Sbjct: 238 EVETVMRDLRQHEVDRLTLGQY--LQPTR-YHMP--VDRYVTPQEFQELGELAKKL 288


>gi|229780997|ref|YP_001103870.2| lipoyl synthase [Saccharopolyspora erythraea NRRL 2338]
 gi|291004370|ref|ZP_06562343.1| lipoyl synthase [Saccharopolyspora erythraea NRRL 2338]
 gi|172044193|sp|A4FA70|LIPA_SACEN RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
          Length = 333

 Score = 60.0 bits (144), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 42/252 (16%), Positives = 87/252 (34%), Gaps = 29/252 (11%)

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQ-EGCDKFCTFCVVPYTRGIEISRSLSQVVD 212
           ++V ++    +I +   +R+    A   I  + C + C FC +   +  E+   + +   
Sbjct: 52  HTVCEEAGCPNIFECWEDRE----ATFLIGGDQCTRRCDFCQIDTGKPAEL--DVEEPRR 105

Query: 213 EARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
            A  +   G+   T+ G      R    DG    +++ +  + ++     +         
Sbjct: 106 VAESVQAMGLRYSTVTGV----ARDDLEDGGAWLYAETVRQIHQLNPGTGVELLIPDFNA 161

Query: 273 MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAIS 332
               L +  G    ++ +    V     RI K +          ++I R R     +   
Sbjct: 162 DPGQLAEVFGSRPEVLAHNVETV----PRIFKRIRPAFRYERSLEVITRARE--DGLVTK 215

Query: 333 SDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY---SPRLGTPGSNMLEQVDENVKAE 389
           S+ I+G  GET ++    +  + + G       +Y   SPR           V+  VK E
Sbjct: 216 SNLILGM-GETPEEVTEALRDLREAGTDIITITQYLRPSPRHH--------PVERWVKPE 266

Query: 390 RLLCLQKKLREQ 401
             +   +   E 
Sbjct: 267 EFVEHTRTAEEL 278


>gi|78776243|ref|YP_392558.1| radical SAM family protein [Sulfurimonas denitrificans DSM 1251]
 gi|78496783|gb|ABB43323.1| Radical SAM [Sulfurimonas denitrificans DSM 1251]
          Length = 502

 Score = 60.0 bits (144), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 37/272 (13%), Positives = 85/272 (31%), Gaps = 14/272 (5%)

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +  +  L +   K      +++ G   +   E       + + ++  +      EL +  
Sbjct: 69  VKEVYELIHIIKKVSPATKIILGG--PEVSHEPFRVNLDLADFIIQGEGDIAFYELCKNI 126

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT---AFLTIQEGCDKFCTFCVVPYTRG 200
                  +    +     +   +   Y     +     ++    GC   C FC+      
Sbjct: 127 LSSNEPREKVIKMSMPSLKNITLPYRYYSDDDIKNRYIYVEASRGCPFECEFCL-SSMDE 185

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
              +  + ++++E   L   G      + +  N          K     L + L++    
Sbjct: 186 KVRAFDIDKLLEEFELLWQRGARNFKFIDRTFNLNI-------KTATILLDFFLNKDLNE 238

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
               +    P      L             L + +Q+ + +I K+++R     + ++ I 
Sbjct: 239 PYFAHFEVVPDHFPQSLKSKIASFKDGALQLEIGIQTLNPQIAKNISRVLNLEKIKENIL 298

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352
            +        I  D IVG PGE+ + F   +D
Sbjct: 299 FL-ENETHAHIHLDLIVGLPGESLESFGKNLD 329


>gi|39997325|ref|NP_953276.1| radical SAM domain-containing protein [Geobacter sulfurreducens
           PCA]
 gi|39984216|gb|AAR35603.1| radical SAM domain protein [Geobacter sulfurreducens PCA]
 gi|307634986|gb|ADI84985.2| radical SAM domain iron-sulfur cluster-binding oxidoreductase
           [Geobacter sulfurreducens KN400]
          Length = 342

 Score = 60.0 bits (144), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 38/211 (18%), Positives = 71/211 (33%), Gaps = 17/211 (8%)

Query: 173 KRGVTAFLTIQ-EGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVCEITLLGQ 230
            R V     I  +GC   C FC      G      S +++    +        E    G 
Sbjct: 2   TRPVIVPFFISHQGCPHRCVFCDQERIAGRAGRLPSAAEIHSAVKTFGRGRPVEAAFYGG 61

Query: 231 NVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDC---LIKAHGDLDVL 287
              +      +        L +      G VR    ++ P  +       +K+ G     
Sbjct: 62  TFTSLPRNEQERLLAALQPLRH-----DGSVRSVRLSTRPDALDAETAGFLKSMG----- 111

Query: 288 MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDF 347
           +  + L VQS  D++L    R H+A +  +  D +RS    IA+ +  + G PG++ +  
Sbjct: 112 VASVELGVQSMDDQVLDVSGRGHSAADTVRAFDVLRS--EGIAVGAQLMPGLPGDSRERS 169

Query: 348 RATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
             ++  +  +       +      GT  +  
Sbjct: 170 LDSLTRILDLKPVSLRIYPTLVVAGTRLAEF 200


>gi|319641647|ref|ZP_07996331.1| hypothetical protein HMPREF9011_01929 [Bacteroides sp. 3_1_40A]
 gi|317386730|gb|EFV67625.1| hypothetical protein HMPREF9011_01929 [Bacteroides sp. 3_1_40A]
          Length = 428

 Score = 60.0 bits (144), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 41/208 (19%), Positives = 76/208 (36%), Gaps = 26/208 (12%)

Query: 174 RGVTAFLTIQEGCDKFCTFC-VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNV 232
            G        +GC K C FC             SL+ V             E+  L +N 
Sbjct: 191 PGKILPFMTSKGCVKKCAFCYNTVVNNSKWRPYSLTSV-----------YREMDFLIENY 239

Query: 233 NAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLH 292
                   D     F D   + + I+              +++ +++    L   +  L+
Sbjct: 240 GITGWMFYDDNI--FVDPERAWTIIEKYKMPSSVELDLNRVNEKMVE--RALKANVAKLY 295

Query: 293 LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352
           + ++SGSDR+LK M++  T  + R+ +    ++   + +   F++  P E+ +D  AT+ 
Sbjct: 296 IGIESGSDRMLKRMHKGITVKQVREKMQMCHNM--GMNVDLSFMILLPNESPEDLEATLS 353

Query: 353 LVDK------IGYAQAFSFKYSPRLGTP 374
           L  +      I         Y+P  GT 
Sbjct: 354 LTRELEEYSNIKIDGPKC--YNPYPGTE 379


>gi|257452085|ref|ZP_05617384.1| oxygen-independent coproporphyrinogen III oxidase [Fusobacterium
           sp. 3_1_5R]
 gi|317058634|ref|ZP_07923119.1| oxygen-independent coproporphyrinogen III oxidase [Fusobacterium
           sp. 3_1_5R]
 gi|313684310|gb|EFS21145.1| oxygen-independent coproporphyrinogen III oxidase [Fusobacterium
           sp. 3_1_5R]
          Length = 365

 Score = 60.0 bits (144), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 35/234 (14%), Positives = 80/234 (34%), Gaps = 29/234 (12%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C   C +C      G          ++  ++ ++    EI+L     +++      G   
Sbjct: 19  CLHKCEYCDFTSFSGK---------LNWKKRYLEALYQEISLYE---HSYYDTIYFGGGT 66

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP-------VQSG 298
                   +++I  L           +++        +L  L  Y  +        +QS 
Sbjct: 67  PSLLEGKEIAKILEL----LPHDEKTEITVECNPKTLNLKKLQDYFEIGVNRLSIGIQSM 122

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           +++ LK + R HT  E +++    R +     IS D +   P +T ++    ++    + 
Sbjct: 123 NEKYLKMLGRLHTVQEAKEVFQMAREIGFQ-NISVDMMFALPTQTLEEVEEDIENFLCLD 181

Query: 359 YAQAFSFKYSPRLGTPGSNMLEQ-----VDENVKAERLLCLQKKLREQQVSFND 407
                 +       TP    LE+      + +V+AE    + + ++E      +
Sbjct: 182 ADHISIYSLIWEENTPFFQKLEKGIYQRTENDVEAEMYQKIIETMKENSYEHYE 235


>gi|120599824|ref|YP_964398.1| putative radical SAM protein [Shewanella sp. W3-18-1]
 gi|120559917|gb|ABM25844.1| conserved hypothetical radical SAM protein [Shewanella sp. W3-18-1]
          Length = 309

 Score = 60.0 bits (144), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 44/246 (17%), Positives = 80/246 (32%), Gaps = 39/246 (15%)

Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW--------RGKG 239
             CTFC V        S   + V+    + ++ G            A             
Sbjct: 43  GGCTFCNV-----ASFSHQTADVL-SITEQLEQGKSRYREAKPQAQADKFIAYFQAYTST 96

Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL--DVLMPYLHLPVQS 297
            D  +   +    ++    G +      + P  + D ++        D +  +L L +Q+
Sbjct: 97  YDEYQVLMAKYDEAVK--DGEIVGLCVGTRPDCVPDNVLDLLARYQADGVDVWLELGLQT 154

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
            +D  L+ +NR H    Y   + R R+    + + +  I+G P ET  D+ AT+  V + 
Sbjct: 155 ANDETLRRINRGHDFACYCDTVSRARAR--GLKVCTHLILGLPNETHGDYMATLAAVLQQ 212

Query: 358 GYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQI---- 413
           G             G+  +          KA R   L        +      VG++    
Sbjct: 213 GVDGLKLHPLHIVEGSTMA----------KAWRSGRLPLL----SLEDYARSVGEMIRHT 258

Query: 414 -IEVLI 418
             EV+ 
Sbjct: 259 PQEVIF 264


>gi|150391412|ref|YP_001321461.1| putative radical SAM protein [Alkaliphilus metalliredigens QYMF]
 gi|149951274|gb|ABR49802.1| conserved hypothetical radical SAM protein [Alkaliphilus
           metalliredigens QYMF]
          Length = 315

 Score = 60.0 bits (144), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 39/235 (16%), Positives = 77/235 (32%), Gaps = 19/235 (8%)

Query: 188 KFCTFCVVPYTRGIEI---SRSLSQVVDEARKLIDNGVCEITLLG--QNVNAWRGKGLDG 242
             CTFC      G E    S  + + +++ +  I         +   QN +         
Sbjct: 44  GGCTFCAE-VGTGFECLPNSYEVVEQLEKNKSYIQKKYKANKFIAYFQNFSNTYMPFEQF 102

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
           +K     ++  + EI    R         D     +++  +   +   + L +Q+ +   
Sbjct: 103 QKYIEEAIVEDVVEIAISTRPDCI----NDKYLGFLQSLQEKHHIEFSIELGLQTVNYHT 158

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           L  +NR HT  E+   + RI+       I +  I+  P +T+ D      ++  +G  Q 
Sbjct: 159 LNKINRGHTLAEFIDAVLRIKRY--GFPICAHLILNLPWDTETDVIENAKIMSALGIEQV 216

Query: 363 FSFKYSPRLGTPGSNMLEQ-----VDENVKAERLLCLQKKLREQQVSFNDACVGQ 412
                     T    M E      +      ER++   + L           +G+
Sbjct: 217 KLHGLYIMENTAMGKMYENKEFQMISVEEYQERVMIFLEYLS--SHIVVQRLIGR 269


>gi|269102333|ref|ZP_06155030.1| hypothetical protein VDA_001759 [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268162231|gb|EEZ40727.1| hypothetical protein VDA_001759 [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 799

 Score = 60.0 bits (144), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 54/329 (16%), Positives = 102/329 (31%), Gaps = 49/329 (14%)

Query: 131 QTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGY---NRKRGVTAFLTIQEGCD 187
           Q +      + R+       + D+     + R+     G         +   + I  GC 
Sbjct: 319 QKHADRELWVNRSPTPLTTEEMDFVFGLPYARIPHPRYGKAKIPAYDMIKTSVNIMRGCF 378

Query: 188 KFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDN--GVCEIT--LLGQNVNAWR------ 236
             C+FC +    G  I +RS   +++E  ++ D   G       L G   N +R      
Sbjct: 379 GGCSFCSITEHEGRIIQNRSKESILNELEEIRDKVPGFTGTISDLGGPTANMYRLGCSDP 438

Query: 237 ----------------GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKA 280
                            K L+ +     DL      +KG+ ++   +    D++    + 
Sbjct: 439 RAEANCRRPSCIFPEICKKLNTDHKHTIDLYRQARNLKGIKKILIASGVRYDLAVESPEY 498

Query: 281 HGDL--DVLMPYLHLPVQSGSDRILKSMNRR--HTAYEYRQIIDRI-RSVRPDIAISSDF 335
             +L    +  YL +  +      L  M +    T Y ++++ ++  +       +   F
Sbjct: 499 VRELVTHHVGGYLKIAPEHTEKGTLDLMMKPGMGTYYRFKEMFEKYSKEAGKKQYLIPYF 558

Query: 336 IVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA------- 388
           I   PG TDDD       + +  +       + P      + M       +K        
Sbjct: 559 ISAHPGSTDDDMLNLALWLKENNFECDQVQNFYPSPMCNATTMYHSETNPLKKVKYKGRD 618

Query: 389 -------ERLLCLQKKLREQQVSFNDACV 410
                  ER   L K L       N A +
Sbjct: 619 DLFVAKGERQRRLHKALLRYHDPANWALI 647


>gi|153953746|ref|YP_001394511.1| methyltransferase [Clostridium kluyveri DSM 555]
 gi|219854364|ref|YP_002471486.1| hypothetical protein CKR_1021 [Clostridium kluyveri NBRC 12016]
 gi|146346627|gb|EDK33163.1| Predicted methyltransferase [Clostridium kluyveri DSM 555]
 gi|219568088|dbj|BAH06072.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 289

 Score = 60.0 bits (144), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 46/235 (19%), Positives = 80/235 (34%), Gaps = 26/235 (11%)

Query: 169 GYNRKRGVTAFLTIQEGCDKF-CTFCVVPYTRGIEISRSLSQVV-DEARKLIDNGVCEIT 226
                   +  + I  GC    CTFC + Y       +SL +V  D        G  E  
Sbjct: 8   YRPPSEAYSLIIQISVGCAHNKCTFCNM-YKAKKFRIKSLEEVYGDLYEARQMYGHVERI 66

Query: 227 LLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV 286
            L        G  L       + +L  + E+    +     + P D+     +   +L  
Sbjct: 67  FLAD------GDSLVLPMEKLTQILLKIKELFPECKRVSAYATPGDILRKSPEELKELKE 120

Query: 287 L-MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETD- 344
           L +   ++ ++SGSD ILK + +  T+ E  +   +I+     I IS  FI G  G+   
Sbjct: 121 LGIGIFYMGIESGSDLILKEIQKGVTSEEIIEAGQKIKKS--GIKISVTFISGIGGKDKW 178

Query: 345 -DDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV---------DENVKAE 389
            ++   +  ++  I              GT    M + +          E +  E
Sbjct: 179 QENAMESARVITAINPDYVGLLTLMVEPGT---KMYDDINSGKFKILSPEEIMLE 230


>gi|167835263|ref|ZP_02462146.1| lipoyl synthase [Burkholderia thailandensis MSMB43]
          Length = 329

 Score = 60.0 bits (144), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 78/221 (35%), Gaps = 12/221 (5%)

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
           + +  ++++    E  S  + G    +G   F+ + + C + C FC V + R   +   +
Sbjct: 64  KTILREHNLHTVCEEASCPNIGECFGKGTATFMIMGDKCTRRCPFCDVGHGRPDPL--DV 121

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
            +  + AR +    +  + +   +    R    DG    F + +  + E     R+   T
Sbjct: 122 DEPKNLARTIAALKLKYVVITSVD----RDDLRDGGAGHFVECIREVREQSPQTRIEILT 177

Query: 268 SHPRDMSDCLIKAH-GDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
              R   D  I         +M +    V     R+ K            +++   +++ 
Sbjct: 178 PDFRGRLDRAISILNAAPPDVMNHNLETV----PRLYKEARPGSDYAHSLKLLKDFKALH 233

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           PD+A  S  +VG  GE  D+    M  +           +Y
Sbjct: 234 PDVATKSGLMVGL-GEMTDEILQVMRDLRAHDVDMLTIGQY 273


>gi|160892523|ref|ZP_02073313.1| hypothetical protein CLOL250_00052 [Clostridium sp. L2-50]
 gi|156865564|gb|EDO58995.1| hypothetical protein CLOL250_00052 [Clostridium sp. L2-50]
          Length = 677

 Score = 60.0 bits (144), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 41/262 (15%), Positives = 86/262 (32%), Gaps = 45/262 (17%)

Query: 160 FERLSIVDGGYNRKRGVTAFLTI------QEGCDKFCTFCVVPYTRGIEI-SRSLSQVVD 212
           ++ ++     Y +  G+ A   +        GC   C+FC + + +G  + +RS   +++
Sbjct: 279 YDYMNTYHPMYEKDGGIPAIAEVKFSLASNRGCFGGCSFCALTFHQGRIVQTRSHESIIE 338

Query: 213 EARKL------------------------IDNGVCEITL-LGQNVNAWRGKGLDGEKCTF 247
           EA+++                         +  +        Q +     + L+     +
Sbjct: 339 EAKRMTKDPEFKGYIHDVGGPTANFRHPACEKQMKYGVCQNKQCLFPKPCQNLNASHKDY 398

Query: 248 SDLLYSLSEIKGLVR------LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
            +LL  L  I G+ +      +R+           L +       +   L +  +  SD 
Sbjct: 399 VELLRKLRRIPGVKKVFVRSGIRFDYLLADHDDTFLRELCRYH--ISGQLRVAPEHISDN 456

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSD----FIVGFPGETDDDFRATMDLVDKI 357
           +LK M +  +   Y   I +   +     +        +   PG T  D  A  + +  I
Sbjct: 457 VLKYMGKP-SNQVYETFIKKYEKINEQYGLKQYAVPYLMSSHPGSTLKDAVALAEYIRDI 515

Query: 358 GYAQAFSFKYSPRLGTPGSNML 379
           GY       + P   T  + M 
Sbjct: 516 GYMPEQVQDFYPTPSTISTCMY 537


>gi|124024047|ref|YP_001018354.1| lipoyl synthase [Prochlorococcus marinus str. MIT 9303]
 gi|123964333|gb|ABM79089.1| lipoic acid synthetase [Prochlorococcus marinus str. MIT 9303]
          Length = 294

 Score = 60.0 bits (144), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 33/198 (16%), Positives = 69/198 (34%), Gaps = 11/198 (5%)

Query: 175 GVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA 234
           G   FL +  GC + C +C + + +    S   ++    +  +    +  + +   N   
Sbjct: 53  GTATFLIMGPGCTRACPYCDIDFDKSP-RSLDPTEPEHLSEAVAQMNLRHVVITSVN--- 108

Query: 235 WRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP 294
            R    DG    F   + ++ +   L  +           D L K  G    ++ +    
Sbjct: 109 -RDDLSDGGASQFVACIEAIRQRSPLTTIELLIPDFNGNWDALAKVMGAAPEVLNHNIET 167

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           V     R+ K    +       +++ ++R   P +   S  +VG  GETD +    ++ +
Sbjct: 168 V----PRLYKRARPQADYMRSLELLYQVRQGWPKVYSKSGLMVGL-GETDAEVIEVLEDL 222

Query: 355 DKIGYAQAFSFKY-SPRL 371
            +         +Y SP  
Sbjct: 223 RRHRVDIVTIGQYLSPSP 240


>gi|119512058|ref|ZP_01631152.1| hypothetical protein N9414_12313 [Nodularia spumigena CCY9414]
 gi|119463284|gb|EAW44227.1| hypothetical protein N9414_12313 [Nodularia spumigena CCY9414]
          Length = 516

 Score = 60.0 bits (144), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 50/348 (14%), Positives = 106/348 (30%), Gaps = 47/348 (13%)

Query: 34  CQMNVY-DSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92
           C  NV  ++                  +  DL++L+   +++              +L  
Sbjct: 51  CDRNVNLETEA--------------DWEWCDLVILSAMLVQKP----------DFHSLIQ 86

Query: 93  SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV-VD 151
             ++ G    V V G    +  ++ L      + ++  +    +P+ LE  + GK   + 
Sbjct: 87  KAVRLGK--KVAVGGPYPTSIPQDAL--DSGAHYLILDEGELTVPKFLEALKDGKEQGIF 142

Query: 152 TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE-ISRSLSQV 210
                 D  +          R   +   +    GC   C FC +    G +  ++   Q 
Sbjct: 143 RSQEKPDVTQSPMPRFDLLQRNAYLMMAIQFSRGCPFNCEFCDIITLYGRKPRTKEPQQT 202

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270
           + E + L D G      +  +          G +     LL  L          +T    
Sbjct: 203 IAELQALYDLGWRGSLFIVDD-------NFIGNQRNVKRLLRELIPWMKQHNYPFTFITE 255

Query: 271 RDM----SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR-RHTAYEYRQIIDRIRSV 325
             +       L++   +       + L +++     L++  + ++T     +   +I   
Sbjct: 256 ASVNLAEDAELLQLMNEAGFYA--VFLGIETPDQDSLQATQKLQNTRNSLVEACQKINEA 313

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
              + I + FI+GF GE           V++    Q           T
Sbjct: 314 --GMLIYAGFILGFDGERPGAGERIQAFVEQTSIPQPMLGILQALPNT 359


>gi|294637724|ref|ZP_06716000.1| radical SAM domain protein [Edwardsiella tarda ATCC 23685]
 gi|291089116|gb|EFE21677.1| radical SAM domain protein [Edwardsiella tarda ATCC 23685]
          Length = 758

 Score = 60.0 bits (144), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 60/321 (18%), Positives = 104/321 (32%), Gaps = 61/321 (19%)

Query: 159 KFERLSIVDGGYNRKRG---VTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEA 214
            F+R+     G  R      +   + I  GC   C FC +    G  I SRS   ++ E 
Sbjct: 351 PFQRVPHPAYGKARLPAYDMIRFSVNIMRGCYGGCAFCSITEHEGRIIQSRSEDSIIREI 410

Query: 215 RKLIDN--GVCEIT--LLGQNVNAWR----------------------GKGLDGEKCTFS 248
            ++ D   G   I   L G   N +                        + +D       
Sbjct: 411 EEIRDKVPGFTGIISDLGGPTANMYMLRCQSPRAEQTCRRASCVYPDICRHMDTNHEPTI 470

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSM 306
            L     ++ G+ ++   +    D++    +   +L    +  YL +  +   +  L  M
Sbjct: 471 KLYRRARDLAGVKKILIASGVRYDLAVQDPRYIKELATHHVGGYLKIAPEHTEEGPLSKM 530

Query: 307 NRRHTAYEYR--QIIDRI-RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY--AQ 361
            +   +  YR  ++ D   +    +  +   FI   PG  D+D       + +  +   Q
Sbjct: 531 MKPGMSSYYRFKELFDSYSKQAGKEQYLIPYFISAHPGTRDEDMVNLALWLKQHRFRLDQ 590

Query: 362 AFSFKYSPR-----LGTPGSNMLEQVD---ENV---KAERLLCLQKKLRE---------Q 401
             +F  SP      +   G N L +VD   E V   K ER   L K L            
Sbjct: 591 VQNFYPSPLANSTTMYYTGKNPLSKVDYKSEEVVVPKGERQRRLHKALLRYHDPANWPMI 650

Query: 402 QVSF----NDACVGQIIEVLI 418
           + +         +G   E L+
Sbjct: 651 RAALEEMGLQHLIGNRRECLV 671


>gi|209963863|ref|YP_002296778.1| oxidoreductase With radical SAM domain, putative [Rhodospirillum
           centenum SW]
 gi|209957329|gb|ACI97965.1| oxidoreductase With radical SAM domain, putative [Rhodospirillum
           centenum SW]
          Length = 428

 Score = 60.0 bits (144), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 40/217 (18%), Positives = 75/217 (34%), Gaps = 20/217 (9%)

Query: 175 GVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA 234
           G  A +    GC   CTFC     R     R +  V+ E   LI  GV  +  + +    
Sbjct: 200 GPGAEVEASRGCPYSCTFCAKENFRDRYRRRPVEVVMREIDGLIAQGVEYVYFIDEIFLP 259

Query: 235 WRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM-SDCLIKAHGDLDVLMPYLHL 293
            R             LL +L+E      +R+      D+    +I   G        +  
Sbjct: 260 NRP------------LLEALAERP----VRFGVQTRIDIWKPEMIALLGRAG--CVSIEA 301

Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
            V+S +    +++++        ++ +R+   R  +A     ++    +  +  RA  D 
Sbjct: 302 GVESLTAEGRQALDKD-CRLSTDELTERLILARRHVAFVQANLIDAGDDDPETVRAWRDR 360

Query: 354 VDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER 390
           + + G          P  G+P    L  + ++   ER
Sbjct: 361 LRQHGVWANDPVPLFPYPGSPDYRRLWGLPDDRAWER 397


>gi|158424805|ref|YP_001526097.1| elongator protein [Azorhizobium caulinodans ORS 571]
 gi|158331694|dbj|BAF89179.1| elongator protein [Azorhizobium caulinodans ORS 571]
          Length = 677

 Score = 60.0 bits (144), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 56/324 (17%), Positives = 101/324 (31%), Gaps = 51/324 (15%)

Query: 122 PIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLT 181
           P+V        +   P +        +V D  Y+   +    +  D        +   +T
Sbjct: 288 PLVQRHGDRDLWLNPPPIPLTTEEMDQVYDLPYA---RAPHPAYGDAKIPAWDMIKFSVT 344

Query: 182 IQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDNGVCEITLL----GQNVNAWR 236
           I  GC   CTFC +    G  I +RS   ++ E  K+ D       ++    G   N +R
Sbjct: 345 IMRGCFGGCTFCSITEHEGRVIQNRSEGSILREIEKIRDQTPGFTGVISDIGGPTANMYR 404

Query: 237 GKGLDGE----------------------KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMS 274
               D +                            L   + E++G+ ++   +    D++
Sbjct: 405 MACKDPKIEAACRLPSCVFPDICPNLNTSHDDLIRLYRKVREVEGVKKVMVASGVRYDLA 464

Query: 275 DCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRRH--TAYEYRQIIDRI-RSVRPDI 329
               +   +L    +  YL +  +      L  M +    T   ++++ +   + V    
Sbjct: 465 VKSPEYVKELVTHHVGGYLKIAPEHTERGPLDKMMKPGIGTYDRFKEMFEAAAKEVGKKY 524

Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML---------- 379
            +   FI   PG TD+D       + K  Y       + P      + M           
Sbjct: 525 YLIPYFIAAHPGTTDEDMMHLALWLKKNRYRADQVQTFLPSPMATATAMYHTGVNTLRGV 584

Query: 380 -----EQVDENVKAERLLCLQKKL 398
                EQV E +K  R   L K  
Sbjct: 585 RRGATEQV-ETIKGGRQRRLHKAF 607


>gi|30577688|emb|CAD18979.1| putative methyltransferase [Streptomyces cattleya]
          Length = 681

 Score = 60.0 bits (144), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 58/349 (16%), Positives = 117/349 (33%), Gaps = 44/349 (12%)

Query: 54  ERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAE 113
           E    + D D++ L +C++        ++F  +++ +     +    +LVV  G      
Sbjct: 58  EMAAGITDPDVLAL-SCYV--------WNFRRQMK-VARLVKERHPGMLVVAGGPHVPDR 107

Query: 114 GEEILRRSPIVNVVVGPQTYYRLPELLER---------------ARFGKRVVDTDYSVED 158
             +   R P V+V+V  +      ELL                  R G   V    +   
Sbjct: 108 PGDFFARHPYVDVLVHGEGETAFRELLIERLADHPDYTRVPGVSVRHGTEAVPGRPAERL 167

Query: 159 KFERLSIVDG-----------GYNRKRGVTAFLTIQEGCDKFCTFCVV-PYTRGIEISRS 206
                +                  R     A      GC   C FC     T        
Sbjct: 168 PRRIETPSPYLLGVMDGAVATCRQRDLRFYALWETNRGCPYSCAFCDWGSATMSALRLFD 227

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
             ++ +E     ++ V ++ +   N         D E         + +    L+R+ + 
Sbjct: 228 AERLQEEIEWFAEHDVEDLFVCDANFGIL---PRDLEIARALADARAATGAPKLIRVNF- 283

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
             +  D    + K   D D+LM    L +QS    +L++++R++   E  + + + R   
Sbjct: 284 AKNSNDRVFEISKTWHDADLLMG-TTLSMQSTDLDVLEAIDRKNIGLENYRKLQQ-RYAT 341

Query: 327 PDIAISSDFIVGFPGETDDDFRATM-DLVDKIGYAQAFSFKYSPRLGTP 374
            +I   ++ I+G P E+   FR  +  L++   +     +++      P
Sbjct: 342 ENIHTYTELILGLPLESPRSFRDGIGSLLEAGNHEDIRVYEFGILPNAP 390


>gi|332978356|gb|EGK15080.1| lipoyl synthase [Psychrobacter sp. 1501(2011)]
          Length = 350

 Score = 60.0 bits (144), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 38/215 (17%), Positives = 74/215 (34%), Gaps = 26/215 (12%)

Query: 161 ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN 220
           E  +  +       G   F+ + + C + C FC V + R  E+     +    A  +   
Sbjct: 78  EEAACPNLPQCFGDGTATFMIMGDICTRRCPFCDVAHGRPNEL--DKDEPRHTAETIQGL 135

Query: 221 GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPR---DMSDCL 277
           G+    +   +    R    DG    F D++     +     +       R   +++  L
Sbjct: 136 GLKYAVITSVD----RDDLKDGGAQHFVDVINESKALSPNCLIEILVPDFRGRMEVALDL 191

Query: 278 I-----KAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAIS 332
           +              +P L+   + GSD                 ++ + ++ RPDIA  
Sbjct: 192 LTETAPDVFNHNIETVPRLYKAFRPGSDYQ-----------HSLDLLKQYKARRPDIATK 240

Query: 333 SDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
             F+VG  GET+++  A +D +           +Y
Sbjct: 241 CGFMVGL-GETEEEVYALLDDLKAHDVDMITVGQY 274


>gi|91204454|emb|CAJ70954.1| hypothetical protein kustb0209 [Candidatus Kuenenia
           stuttgartiensis]
          Length = 458

 Score = 60.0 bits (144), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 52/291 (17%), Positives = 90/291 (30%), Gaps = 31/291 (10%)

Query: 74  EKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTY 133
            ++ +   ++ G  ++L  +  K      +V  G       +EI+  +P ++  V  +  
Sbjct: 74  NQSRKNPLNYYGDFQHLLRTIKKRCPSTHIVAGGTGFSMFAQEIMNTNPEIDYGVYLEGE 133

Query: 134 YRLPELLERARFGKRVVDTDYSVE-----------DKFERLSIVDGGYNRKRGVT----- 177
             L EL +      +V    Y               +FE+                    
Sbjct: 134 ETLSELTDNLDHPDKVKGVYYRKNGVVYYTGTRTLPQFEKFPAPGRDIVNPIPYINGEAA 193

Query: 178 AFLTIQEGCDKFCTFCVVPYTRGI-EISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAW 235
             +  Q GC   C +C  P   G    SR  + VVDE   L+ + G+ +        N  
Sbjct: 194 IGIQTQRGCPLKCAYCNYPALNGNLLRSRPPANVVDEIENLLHSYGIQQFMFADSLFNKP 253

Query: 236 RGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPV 295
               +   K      L    EIK +  L       R ++   +    +       +    
Sbjct: 254 LEHAIGICKEIMKRNLQ--DEIKWMCWL-----DVRGVTKDFLHLLKNAG--CSGISFSP 304

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGF---PGET 343
              S   L S+ +          I +I +  P I  +   I  F   PGET
Sbjct: 305 DGLSTSSLISLRKGI-KERDVWNILKIITTDPVIKDTKFIITMFINSPGET 354


>gi|325291759|ref|YP_004277623.1| oxygen-independent coproporphyrinogen III oxidase [Agrobacterium
           sp. H13-3]
 gi|325059612|gb|ADY63303.1| oxygen-independent coproporphyrinogen III oxidase [Agrobacterium
           sp. H13-3]
          Length = 399

 Score = 60.0 bits (144), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 37/226 (16%), Positives = 74/226 (32%), Gaps = 20/226 (8%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C   C +C           R + Q        +        L G  V      G  G   
Sbjct: 32  CAAKCPYC---DFNSHVRHRPVDQ-ERFTAAFLSEMAKMRALSGPRVVTSIFMG--GGTP 85

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY-------LHLPVQSG 298
           +  D     + + G+ R  +      +++     +  + +    Y       + L VQ+ 
Sbjct: 86  SLMDPQTVGALLDGVSRF-WHVPDGIEITMEANPSSVEAERFRGYRAAGVNRVSLGVQAL 144

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           +DR LK + R H   +  + I   R + P ++   D I   P +T  ++ A +       
Sbjct: 145 NDRDLKFLGRLHDVADALKAIRLAREIFPRMSF--DLIYARPNQTVAEWDAELKEAVSYA 202

Query: 359 YAQAFSFKYSPRLGTPGSNMLEQ----VDENVKAERLLCLQKKLRE 400
                 ++ +   GTP   + +     V +   +  L    +++ E
Sbjct: 203 VDHLSLYQLTIEEGTPFYGLHKAGKLIVPDGEHSAVLYEATQEITE 248


>gi|297571551|ref|YP_003697325.1| oxygen-independent coproporphyrinogen III oxidase [Arcanobacterium
           haemolyticum DSM 20595]
 gi|296931898|gb|ADH92706.1| oxygen-independent coproporphyrinogen III oxidase [Arcanobacterium
           haemolyticum DSM 20595]
          Length = 394

 Score = 60.0 bits (144), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 38/214 (17%), Positives = 75/214 (35%), Gaps = 23/214 (10%)

Query: 173 KRGVTAFLTIQEGCDKFCTFC------VVPYTRGIEISRSLSQVVDEARKLIDNGVCEIT 226
             G  A++ I   C   C +C         +  G ++S     V  E             
Sbjct: 20  TSGFGAYVHIPF-CRVRCGYCDFNTYTNTDFGPGAKVSDYQESVAREIELSSHQ------ 72

Query: 227 LLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDC------LIKA 280
           L+     +       G   T  +    ++ ++ L R  +   +  +++           A
Sbjct: 73  LIAGGDPSLTSIFFGGGTPTMLNATQLVAILRKL-RETFGVVNGAEITTEANPESVNRDA 131

Query: 281 HGDLDVL-MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGF 339
              L       +   +QS    +L ++ R+HT  + R++    R V   +  S D I G 
Sbjct: 132 LETLKNGGFTRVSFGMQSAVSHVLDTLERQHTPGQVREVTRWARQV--GLDYSVDLIYGA 189

Query: 340 PGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
           PGE+ DD++ ++D    +      ++  +   GT
Sbjct: 190 PGESLDDWQRSLDAAIALEPGHISAYGLTIEPGT 223


>gi|330686126|gb|EGG97747.1| putative coproporphyrinogen dehydrogenase [Staphylococcus
           epidermidis VCU121]
          Length = 377

 Score = 60.0 bits (144), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 84/235 (35%), Gaps = 26/235 (11%)

Query: 186 CDKFCTFCVV-PYTRGIEISRSLSQ-----VVDEARKLIDNGVC--EITLLGQNVNAWRG 237
           C + CT+C    Y    +    + +     +++  R+  +       + + G    A   
Sbjct: 13  CVRICTYCDFNKYFIDKQ---PVDEYLDALILEMERRTQNANTKLKTMYVGGGTPTALNI 69

Query: 238 KGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQS 297
             L+     F   +  +  I+G                 L+KA G     +  + + VQ+
Sbjct: 70  DQLN----KFLSAINRIFTIEGEFSFEANPDELTFEKVKLLKAFG-----VNRVSMGVQT 120

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
               +L+ + R H   +    +   R    + +IS D +   P +T +DF  +++L  K+
Sbjct: 121 FKPELLEILGRTHKTEDIYDAVRNARDAGIE-SISLDLMYHLPQQTLEDFEKSLNLAMKM 179

Query: 358 GYAQAFSFKYSPRLGTPGSNMLEQ-----VDENVKAERLLCLQKKLREQQVSFND 407
                 S+       T   NM  +      +E++ AE    L  K+ + +    +
Sbjct: 180 DIDHISSYGLILEPKTQFYNMYRKGHLKLPNEDLGAEMYQTLMHKIEDSKFHQYE 234


>gi|251795309|ref|YP_003010040.1| radical SAM protein [Paenibacillus sp. JDR-2]
 gi|247542935|gb|ACS99953.1| Radical SAM domain protein [Paenibacillus sp. JDR-2]
          Length = 608

 Score = 60.0 bits (144), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 54/312 (17%), Positives = 107/312 (34%), Gaps = 33/312 (10%)

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVV---GPQTYYRLPELL 140
           +     + N   K   ++ +++ G     + E  + R   V+ +V   G +T++ L   +
Sbjct: 67  IEETITVINMLRKIMPEIKIILGGPEVSYDTEYWMERISEVDFIVVGEGEETFHHLLTEI 126

Query: 141 ERARFGKRVVDTDYSV--EDKFE----------RLSIVDGGYNRKRGVTA------FLTI 182
           E A     V    Y    ED+ E           L+ +   +  +  +        +   
Sbjct: 127 EGAGKYHMVFGIAYRKQREDRVEILLNPGRPKLDLATLPSPHRFEEDIPHLGSRVVYFET 186

Query: 183 QEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG 242
             GC   C FC+     G      + +   +   LID+G   I  + +  N  R   L+ 
Sbjct: 187 SRGCPFSCQFCLSSIEVG-VRYFDMERTKADITYLIDSGAKLIKFVDRTFNIKRDYALEM 245

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL-DVLMPYLHLPVQSGSDR 301
            K    +    + + +              M   ++    +     +    + VQS +D 
Sbjct: 246 FKFLIENHRGCVFQFE---------ITADIMRPEVLDYLAEHAPPGVFRFEIGVQSTNDP 296

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
             +++ RR    +  + + +++     I    D I G P E  D FR T + V ++G  +
Sbjct: 297 TNEAVQRRQNWKKLVRTVTKVKES-GKIDQHLDLIAGLPLENYDTFRGTFNDVFELGPEE 355

Query: 362 AFSFKYSPRLGT 373
                     GT
Sbjct: 356 LQLGFLKMLRGT 367


>gi|323706552|ref|ZP_08118108.1| Radical SAM domain protein [Thermoanaerobacterium xylanolyticum
           LX-11]
 gi|323534110|gb|EGB23905.1| Radical SAM domain protein [Thermoanaerobacterium xylanolyticum
           LX-11]
          Length = 466

 Score = 60.0 bits (144), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 57/328 (17%), Positives = 101/328 (30%), Gaps = 43/328 (13%)

Query: 77  AEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL 136
            +     L  I+ +K +  K      + V G       +EIL   P ++ VV  +     
Sbjct: 92  QDGAIEALRFIKKIKETGYKGH----LSVGGIYPTFSYDEILMECPQIDTVVLGEGELTF 147

Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVD----------GGYNRKRGVT--------A 178
            EL ++    +   D +  V    + L   D            Y  +  +         A
Sbjct: 148 TELAKKILNDEEWKDLEGIVYKDGDTLKANDKRPLIDDLDSMPYPERDTLPIVILKSGFA 207

Query: 179 FLTIQEGCDKFCTFCVV----PYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVN 233
            +    GC   C+FC V             RS+  V+DE + L +   V  +        
Sbjct: 208 SILTSRGCYGRCSFCSVGPFFSQFGQKYRQRSVENVIDEIKILYEKYNVRNLFFNDAEFV 267

Query: 234 AWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHL 293
             +GK  +       +++ S     G+           D+   L          +  + L
Sbjct: 268 GGKGKSYERAYRLAEEIIRS-----GMNINFSIQCRVNDVDKELFSILKKAG--LKRVFL 320

Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFP-------GETDDD 346
            V+SGS  +L    +     +    +  +  +  D+ IS  FI+  P        E    
Sbjct: 321 GVESGSQTVLDRFKKDVRVEDNINALKILNDL--DLYISMGFIMFDPHINFKELSENISF 378

Query: 347 FRATMDLVDKIGYAQAFSFKYSPRLGTP 374
               + L+ K         +  P  GT 
Sbjct: 379 INNAVKLIGKERLDYYPVSRLLPLAGTE 406


>gi|254481480|ref|ZP_05094724.1| lipoic acid synthetase [marine gamma proteobacterium HTCC2148]
 gi|214038108|gb|EEB78771.1| lipoic acid synthetase [marine gamma proteobacterium HTCC2148]
          Length = 329

 Score = 60.0 bits (144), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 36/252 (14%), Positives = 83/252 (32%), Gaps = 31/252 (12%)

Query: 130 PQTYYRLPELLE-RARFGKRVVDTDYSVEDK-----FERLSIVDGGYNRKRGVTAFLTIQ 183
           P    R P+ L  + + GK     +  V +       E     +       G    + + 
Sbjct: 37  PGERLRKPDWLRIKVQGGKTFERINSIVREHRLATVCEEAKCPNMSECWSSGTATIMLLG 96

Query: 184 EGCDKFCTFCVV----PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
           + C + C FC V    P            + ++ AR +    +  + L   N    R   
Sbjct: 97  DVCTRACRFCAVNTGNPQGW-----LDPDEPLNTARSVQLMNLKYVVLTSVN----RDDL 147

Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
            DG    ++  +  + E                ++   +    D++ ++           
Sbjct: 148 ADGGAGQYAACVRKVKEENPET-------AVEALTPDFLGVLADVETVVDSGIEVFAQNV 200

Query: 300 DRILKSMNR----RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
           + + +  +     R +  +  +++   +  RPD+   +  ++G  GET+++    MD + 
Sbjct: 201 ETVKRLTHPVRDPRASYEQTLEVLAHAKRYRPDVLTKTSLMLGL-GETEEEILQCMDDLR 259

Query: 356 KIGYAQAFSFKY 367
           + G       +Y
Sbjct: 260 EAGVDIVTFGQY 271


>gi|145245333|ref|XP_001394934.1| lipoyl synthase [Aspergillus niger CBS 513.88]
 gi|306755819|sp|A5ABM5|LIPA_ASPNC RecName: Full=Lipoyl synthase, mitochondrial; AltName: Full=Lipoate
           synthase; Short=LS; Short=Lip-syn; AltName: Full=Lipoic
           acid synthase; Flags: Precursor
 gi|134079634|emb|CAK97060.1| unnamed protein product [Aspergillus niger]
          Length = 416

 Score = 60.0 bits (144), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 40/262 (15%), Positives = 90/262 (34%), Gaps = 15/262 (5%)

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQ-EGCDKFCTFCVVPYTR 199
           +R +   R ++     E+          G   K   TA + +  + C + C+FC V  +R
Sbjct: 118 QRLKKDLRGLNLHTVCEEARCPNISDCWGGGDKAAATATIMLMGDTCTRGCSFCSVKTSR 177

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
                    +  + A  +   G+  + L   +    R    DG    F++ +  +     
Sbjct: 178 RPAA-LDPHEPENTAEAISRWGLGYVVLTSVD----RDDLADGGARHFAETVRKIKSKAP 232

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
              +   T   R     ++    +  + + Y H  +++      +  +RR T  +   ++
Sbjct: 233 STLVECLTGDYRG-DLDMVALVANSGLDV-YAH-NIETVEALTPRVRDRRATFKQSIAVL 289

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
           +  +   P++   S  ++G  GET++     +  +  +        +Y  R     +   
Sbjct: 290 EAAKKANPEVITKSSLMLGL-GETEEQLEHALAQLRAVDVDVVTFGQYM-RP----TKRH 343

Query: 380 EQVDENVKAERLLCLQKKLREQ 401
             V E V        Q++  E 
Sbjct: 344 MAVHEYVHPRWFEHWQRRAEEL 365


>gi|134097989|ref|YP_001103650.1| putative Fe-S oxidoreductase [Saccharopolyspora erythraea NRRL
           2338]
 gi|133910612|emb|CAM00725.1| putative Fe-S oxidoreductase [Saccharopolyspora erythraea NRRL
           2338]
          Length = 645

 Score = 60.0 bits (144), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 61/410 (14%), Positives = 125/410 (30%), Gaps = 77/410 (18%)

Query: 71  HIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGP 130
            +     E V      IR  K      G D L++           +    S   +  +  
Sbjct: 157 AVLGDGEEAVLEVTEAIRKWKAEGEPGGRDELLLRLAESGGVYVPKFYDVSYGADGAI-- 214

Query: 131 QTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190
           ++     E +    F +  ++ D     K   + + +  + R       + I  GC + C
Sbjct: 215 ESVVPNDERVPYRVFKRTTMELDDWPYPKKPLVPLAESVHERMS-----VEIFRGCTRGC 269

Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLG---------QNVNAWRGKGL 240
            FC           RS+  + +  ++ ++  G  E+ LL           ++        
Sbjct: 270 RFCQAGMITRPVRERSIEGIGEMVQRGLEATGFEEVGLLSLSSADHSEIADITKGLADRY 329

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300
           +G     S     +                   +  L             L    + GS+
Sbjct: 330 EGTGTGLSLPSTRVDA----------------FNIDLANELSRNGR-RSGLTFAPEGGSE 372

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIA--ISSDFIVGFPGETDDDFRATMDLVDKI- 357
           RI + +N+  +    + +I  + +   +    +   F+ G P ETD+D     ++  ++ 
Sbjct: 373 RIRRVINKMVSE---KDLIRTVSAAFANGWRQVKLYFMCGLPTETDEDVLQIAEMAKEVI 429

Query: 358 --------GYAQAFSF---KYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLR------- 399
                         +     + P+  TP      Q D +   ERL  L++ +        
Sbjct: 430 RAGRAASGRKDIRCTISIGGFVPKPHTP-FQWASQCDPDTVDERLRKLRQAVNSDRGLGR 488

Query: 400 --------------EQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWL 435
                         E  +S  D  +G++    IE+  +E G+  G +   
Sbjct: 489 NIGMRYHDGKPSLVEGLLSRGDRRLGRV----IERVWREGGRFDGWNEHF 534


>gi|222054203|ref|YP_002536565.1| oxygen-independent coproporphyrinogen III oxidase [Geobacter sp.
           FRC-32]
 gi|221563492|gb|ACM19464.1| oxygen-independent coproporphyrinogen III oxidase [Geobacter sp.
           FRC-32]
          Length = 387

 Score = 60.0 bits (144), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 39/202 (19%), Positives = 66/202 (32%), Gaps = 15/202 (7%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C K C +C      G  +S     V    R++          +      + G    G   
Sbjct: 18  CLKKCLYCDFDSVAGSLVS-PDEYVAAVVREMELRAAKLAAPVSAPTLYFGG----GTPS 72

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY-------LHLPVQSG 298
             +     +  I       Y  +   +++          + L  Y       L L VQ+ 
Sbjct: 73  LMA--PQLVGRIIDTAARLYGLNSDGEITIEANPGTVTAEKLAGYRAAGINRLSLGVQAL 130

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
            D +L+ + R H+  E        R V  D  I  D I   PG++   +   +D   ++G
Sbjct: 131 DDALLQQLGRVHSVEESLAAYKAARKVGFD-NIGIDLIHSLPGQSLTMWEKALDEAIRLG 189

Query: 359 YAQAFSFKYSPRLGTPGSNMLE 380
                ++  S   GTP + M E
Sbjct: 190 PEHISAYSLSVEEGTPFAAMFE 211


>gi|284048069|ref|YP_003398408.1| oxygen-independent coproporphyrinogen III oxidase [Acidaminococcus
           fermentans DSM 20731]
 gi|283952290|gb|ADB47093.1| oxygen-independent coproporphyrinogen III oxidase [Acidaminococcus
           fermentans DSM 20731]
          Length = 377

 Score = 59.6 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 43/205 (20%), Positives = 72/205 (35%), Gaps = 27/205 (13%)

Query: 186 CDKFCTFCVVPYTRGIEISRSL--SQVV-DEARKLIDNGV--CEITLLGQNVNAWRGKGL 240
           C   C +C          S  +    ++ D AR+L++          +      + G G 
Sbjct: 18  CVHKCAYC-------DFASYQIYNDHIMTDYARRLVEEISAWTPALPVSPTATVYFGGGT 70

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY-------LHL 293
                     L  L+ I   ++ R    HP + +        D + L  Y       L L
Sbjct: 71  PS-----VLPLEDLAAIVTALKERGFWQHPAEATLEANPGTVDRERLRFYRQLGFDRLSL 125

Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA-ISSDFIVGFPGETDDDFRATMD 352
            +QS     L +M R HTA +  + I   R        IS D I G+PG+T +  R +++
Sbjct: 126 GIQSFQPEELAAMGRIHTAEQAEEAIALAREA--GFRRISGDLIYGYPGQTVETVRDSLE 183

Query: 353 LVDKIGYAQAFSFKYSPRLGTPGSN 377
            +   G      +  +   GT  + 
Sbjct: 184 RLLDTGVDHVSVYGLTVEEGTLLAK 208


>gi|328953123|ref|YP_004370457.1| Conserved hypothetical protein CHP01212 [Desulfobacca acetoxidans
           DSM 11109]
 gi|328453447|gb|AEB09276.1| Conserved hypothetical protein CHP01212 [Desulfobacca acetoxidans
           DSM 11109]
          Length = 314

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 49/109 (44%), Gaps = 3/109 (2%)

Query: 273 MSDCLIKAHGDLDVL-MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAI 331
           +S  L+K  G L    + +L L +QS  DR L+ +NR H A  + + ++   +    + +
Sbjct: 130 LSPDLLKLLGSLAQTHLVWLELGLQSAHDRTLRLINRGHDAACFVKAVNT--AAHRGVHL 187

Query: 332 SSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
            +  ++G PGE+  D  AT   +  +              GTP + + +
Sbjct: 188 LAHVMLGLPGESKADMLATATFLGTLPVDGVKLHLVYVIKGTPLAELYD 236


>gi|312134797|ref|YP_004002135.1| Radical SAM domain-containing protein [Caldicellulosiruptor
           owensensis OL]
 gi|311774848|gb|ADQ04335.1| Radical SAM domain protein [Caldicellulosiruptor owensensis OL]
          Length = 622

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 63/352 (17%), Positives = 115/352 (32%), Gaps = 54/352 (15%)

Query: 69  TCHI---REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVN 125
           TC++    +    K Y  +     +K           V  A   A    E+         
Sbjct: 197 TCYVAKDIQHLEGKDYIIIDSYEKVKED--------KVAYARAFAIQYREQNPYTGK--- 245

Query: 126 VVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVD--GGYNRKRGVTAFLTIQ 183
           ++V P     + +           +D  YS+  +     I +  GG      V   +   
Sbjct: 246 IIVQPHKNLYVVQNPPAKPLTVEEIDYVYSLPYERNYHPIYEKEGGIKALEEVKFSIVSH 305

Query: 184 EGCDKFCTFCVVPYTRGIEIS-RSLSQVVDEARK----------LIDNGVCEITLL---- 228
            GC   C FC + + +G  +  RS   ++DE +K          + D G           
Sbjct: 306 RGCFGGCNFCALHFHQGRIVQKRSQKSILDEVKKLTKLPDFKGYIHDVGGPTANFRNPAC 365

Query: 229 -----------GQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCL 277
                       Q +     K L+ +   + +LL  + +IKG+ ++ +  S  R     L
Sbjct: 366 FLQLEKGACKNRQCLFPQPCKNLEVDHTEYFELLDRIRKIKGVKKV-FIRSGIRYDYLLL 424

Query: 278 IKAHGD-LDVLMPYL-----HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA- 330
            K + + L+ L  Y       +  +  S+ +LK M +      Y + +     V   +  
Sbjct: 425 DKNYREFLEKLCMYYISGQLKIAPEHVSNNVLKYMGKP-PKEVYEKFVKEYFEVNKRLGK 483

Query: 331 ---ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
              I    + G PG T +D       + + G+       + P  GT  + M 
Sbjct: 484 KQYIIPYLMSGHPGTTLEDAIELAVFLKRNGFVPEQVQDFYPTPGTVSTTMY 535


>gi|301620523|ref|XP_002939612.1| PREDICTED: radical S-adenosyl methionine domain-containing protein
           1, mitochondrial-like [Xenopus (Silurana) tropicalis]
          Length = 438

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 34/203 (16%), Positives = 70/203 (34%), Gaps = 16/203 (7%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C+K CT+C              S      R  +      +  L Q V+        G   
Sbjct: 48  CEKRCTYC------NFNKYIPRSDNEAAIRSCLVQEARTLIRLSQ-VHRITSVFFGGGTP 100

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL-------MPYLHLPVQSG 298
           + +    +++ +   V          +++        +   L       +  L + VQS 
Sbjct: 101 SLASHG-TIAAVLEAVSQTALLPQDAEITLEANPTSAERSRLQQFQKAGVNRLSVGVQSL 159

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
            D+ L  + R H+  E ++ ++   ++ P    S D I G PG++   +  T+  +  I 
Sbjct: 160 DDQELLLLGRTHSTSEAQKTLEEACNLFPG-RTSVDIIFGLPGQSLASWHRTLRQLLDIC 218

Query: 359 YAQAFSFKYSPRLGTPGSNMLEQ 381
                 ++ +   GT    M++ 
Sbjct: 219 DDHVSLYQLTLERGTSLFKMVQD 241


>gi|302384785|ref|YP_003820607.1| Radical SAM domain protein [Clostridium saccharolyticum WM1]
 gi|302195413|gb|ADL02984.1| Radical SAM domain protein [Clostridium saccharolyticum WM1]
          Length = 586

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 43/258 (16%), Positives = 88/258 (34%), Gaps = 20/258 (7%)

Query: 105 VAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLS 164
           V  C  +   E    RS     V G            R+  G  V     +  D      
Sbjct: 132 VVRCYLKRGRENQESRSSSFEAVEGTA---------VRSEDGNVVEIAPKTTVDMSSIPF 182

Query: 165 IVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCE 224
           +       +  +  + +   GC   C++C+          R  + V+ E    ++N V +
Sbjct: 183 LYQDLKEFENRIIYYES-SRGCPFSCSYCL-SSLDKSVRLRDTALVLKELDVFLNNRVPQ 240

Query: 225 ITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL 284
           +  + +  N  R       K T +   + +    G+    +  S    +++  ++    +
Sbjct: 241 VKFVDRTFNCNR-------KHTMAIWRHIIEHDNGVTNFHFEISADL-LNEEELEIMSRM 292

Query: 285 DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETD 344
              +  L + VQS +   ++ + R       ++ + RI +   +I    D I G P E  
Sbjct: 293 RKGLIQLEIGVQSTNPDTIREIRRTMDLNRLKETVGRI-NRFGNIHQHLDLIAGLPWEDY 351

Query: 345 DDFRATMDLVDKIGYAQA 362
             FR + + V ++   Q 
Sbjct: 352 QSFRNSFNEVYEMKPEQL 369


>gi|296132943|ref|YP_003640190.1| Radical SAM domain protein [Thermincola sp. JR]
 gi|296031521|gb|ADG82289.1| Radical SAM domain protein [Thermincola potens JR]
          Length = 646

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 66/343 (19%), Positives = 110/343 (32%), Gaps = 65/343 (18%)

Query: 111 QAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGY 170
           Q   E  L+ +    +    Q  Y    L++    G  V +       + E   +    +
Sbjct: 222 QEVAENKLKYAEAFRIQYLNQNPYTGQALVQEHDGGYVVQNPPARPLSEKEMDELYSLPF 281

Query: 171 NR--------KRGVTAFLTI------QEGCDKFCTFCVVPYTRGIEIS-RSLSQVVDEAR 215
            R        + GV A   +        GC   C FC + + +G  I  RS   ++ E R
Sbjct: 282 MRAAHPKYAKQGGVPALQEVEFSITSHRGCFGGCAFCALNFHQGRLIQKRSAESILTEIR 341

Query: 216 KLID-NGVCEIT--LLGQNVN----AWRGKG------LDGEKCTFS--------DLLYSL 254
           ++        I   + G   N    A RGKG      L  EKC           DLL   
Sbjct: 342 QMTKSENFKGIIHDIGGPTANFRNPACRGKGCTERLCLYPEKCNNLQVDHAEYIDLLRKA 401

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY-----LHLPVQSGSDRILKSMNRR 309
             I G+ ++   +    D      K    L  L  +     L +  +  +   L++M + 
Sbjct: 402 RSIPGVKKVFVRSGVRYDYLMADRKRKEILKELCEHHVSGLLKVAPEHVAAGTLQAMRKP 461

Query: 310 HTAYEYRQIIDRIRSVRPDIA--------ISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
                 + +    R +  D+         +   FI G PG T  D     + V  +GY  
Sbjct: 462 -----PKHVFTAFRQLFYDVNKSIGKEQYLVPYFIAGHPGTTLKDAVELAEYVRDLGYNP 516

Query: 362 AFSFKYSPRLGTPGSNMLEQ-----------VDENVKAERLLC 393
                ++P  G+  + M              V ++ K  R+  
Sbjct: 517 EQVQDFTPTPGSLATCMYYTGIDPLTGKKVYVPKSEKERRMQR 559


>gi|251777772|ref|ZP_04820692.1| radical SAM domain protein [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|243082087|gb|EES47977.1| radical SAM domain protein protein [Clostridium botulinum E1 str.
           'BoNT E Beluga']
          Length = 682

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 54/341 (15%), Positives = 110/341 (32%), Gaps = 53/341 (15%)

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           E     +  +  +      +  +   DGG    + V   +T   GC   C+FC + + +G
Sbjct: 265 ENLTQEEMDITYNLPYTRTYHPIYEADGGIPAIQEVKFSITSHRGCFGSCSFCALTFHQG 324

Query: 201 IEI-SRSLSQVVDEA-------------------------RKLIDNGVCEITLLGQNVNA 234
             I +RS + ++DEA                         R      V       Q +  
Sbjct: 325 RVIQNRSQNSIIDEAKLLTTLPDFKGYIHDIGGPTADFRHRACKKQEVHGTCKTKQCMFP 384

Query: 235 WRGKGLDGEKCTFSDLLYSLSEIKGL----VRLRYTTSHPRDMSDCLIKAHGDLDVLMPY 290
              K L  +   +  LL  + ++ G+    +R      +     +           +   
Sbjct: 385 SPCKNLKIDHTEYLSLLKKVRKLPGIKKVFIRSGIRYDYLIHDKNDSFFKELCEHHISGQ 444

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA----ISSDFIVGFPGETDDD 346
           L +  +    ++L  M +  T   Y + +D+  ++   +     +    +   PG   + 
Sbjct: 445 LKVAPEHVVPKVLNQMGKP-TREVYDRFVDKYFNINKKLNKKQFLVPYLMSSHPGSDLNA 503

Query: 347 FRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML--------------EQVDENVKAERLL 392
                  V ++GY       + P  G+  + M                +  E  + +R L
Sbjct: 504 AIELAQYVKEMGYTPEQVQDFYPTPGSLSTTMYYTGFNPLTGEEVYIPKTPEEKEMQRAL 563

Query: 393 CLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSP 433
            +Q  + +       A +    E LI  +GK+   L+G +P
Sbjct: 564 -IQFAIPKNHKKVKKALIAAHREDLI-GNGKD--CLIGFTP 600


>gi|238755469|ref|ZP_04616809.1| hypothetical protein yruck0001_3460 [Yersinia ruckeri ATCC 29473]
 gi|238706310|gb|EEP98687.1| hypothetical protein yruck0001_3460 [Yersinia ruckeri ATCC 29473]
          Length = 740

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 55/297 (18%), Positives = 101/297 (34%), Gaps = 58/297 (19%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDNGVCEITLLGQ-------- 230
           + I  GC   C+FC +    G  I SRS   ++ E  ++ D       ++          
Sbjct: 377 INIMRGCYGGCSFCSITEHEGRIIQSRSEDSIIREIEEIRDKVPGFTGIISDLGGPTANM 436

Query: 231 ----------NVNAWRGKGLDGEKCTFSD--------LLYSLSEIKGLVRLRYTTSHPRD 272
                          R   +  E CT  D        L     ++KG+ ++   +    D
Sbjct: 437 YMLRCQSPRAEQTCRRASCVYPEICTHMDTNHQPTIALYRRARDLKGVKKILIASGVRYD 496

Query: 273 MSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRR--HTAYEYRQIIDRI-RSVRP 327
           ++    +   +L    +  YL +  +   +  L  M +    +   ++++ D   +    
Sbjct: 497 LAVEDPRYIKELATHHVGGYLKIAPEHTEEGPLSKMLKPGMGSYQRFKELFDTYSKQAGK 556

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGY--AQAFSFKYSPR-----LGTPGSNMLE 380
           +  +   FI   PG  D+D       + K  +   Q  +F  SP      +   G N L 
Sbjct: 557 EQYLIPYFISAHPGTRDEDMVNLALWLKKNRFRLDQVQNFYPSPLANSTTMYYSGKNPLA 616

Query: 381 QVD---ENV---KAERLLCLQKKLRE---------QQVSFND----ACVGQIIEVLI 418
           +VD   E+V   K +R   L K L            + + N+      +G   E L+
Sbjct: 617 KVDYKSEDVVVPKGDRQRRLHKALLRYHDPANWLMIRTALNEMGMSHLIGSRRECLV 673


>gi|332981597|ref|YP_004463038.1| Radical SAM domain-containing protein [Mahella australiensis 50-1
           BON]
 gi|332699275|gb|AEE96216.1| Radical SAM domain protein [Mahella australiensis 50-1 BON]
          Length = 619

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 52/273 (19%), Positives = 100/273 (36%), Gaps = 40/273 (14%)

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           + V + + +   +   +  +D  ++R     A L I  GC + C FC           RS
Sbjct: 235 RVVTNLNSAAYPERPIVPYIDIVHDR-----AVLEIFRGCTRGCRFCQAGMVYRPIRERS 289

Query: 207 LSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE--IKGLVRL 263
             ++V+ A KL+   G  E++L   +          G+      L+  L E   +  V L
Sbjct: 290 ADRLVELADKLVRATGYSEMSLSSLST---------GDYSQLEQLVKILLEKFQEDKVAL 340

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
              +     +   L++    +      L    ++G+ R+   +N+  T  +  + ++   
Sbjct: 341 SLPSLRLDSIDKSLLERIQSVKK--TGLTFAPEAGTQRLRDVINKGITDDDILRTVEYAF 398

Query: 324 SVRPDIAISSDFIVGFPGETDDD---FRATMDLVDKIGYA------------QAFSFKYS 368
                 ++   F++G P ETDDD          +  + Y+               +  + 
Sbjct: 399 QQGWQ-SVKLYFMIGLPTETDDDLYGIAEMARRILDVYYSIPKDQRGRHIDITVSTSSFV 457

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQ 401
           P+  TP      Q D   K +RL   Q  L++Q
Sbjct: 458 PKPFTPF-----QWDPQDKIDRLSYKQHLLQQQ 485


>gi|304395652|ref|ZP_07377535.1| lipoic acid synthetase [Pantoea sp. aB]
 gi|304356946|gb|EFM21310.1| lipoic acid synthetase [Pantoea sp. aB]
          Length = 321

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 35/212 (16%), Positives = 75/212 (35%), Gaps = 14/212 (6%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V    G   +   ++    A+ + D G+  + +   +    R    DG   
Sbjct: 94  CTRRCPFCDV--AHGRPNAPDANEPAKLAQTIADMGLRYVVITSVD----RDDLRDGGAQ 147

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAH-GDLDVLMPYLHLPVQSGSDRILK 304
            F+D + ++ E    +++       R   D  ++        +  +    V     R+ +
Sbjct: 148 HFADCIRAIREKNPTIKIETLVPDFRGRMDRALEILTATPPDVFNHNLENV----PRVYR 203

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
            +          ++++R +   PDI   S  +VG  GET+ +    M  + + G      
Sbjct: 204 QVRPGANYEWSLKLLERFKEAHPDIPTKSGLMVGL-GETNAEIVEVMRDLRRHGVTMLTL 262

Query: 365 FKYSP--RLGTPGSNMLEQVDENVKAERLLCL 394
            +Y    R   P    +   + +   E  + +
Sbjct: 263 GQYLQPSRHHLPVQRYVSPAEFDEMKEEAMAM 294


>gi|300864083|ref|ZP_07108982.1| radical SAM family protein [Oscillatoria sp. PCC 6506]
 gi|300337899|emb|CBN54128.1| radical SAM family protein [Oscillatoria sp. PCC 6506]
          Length = 498

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 50/340 (14%), Positives = 110/340 (32%), Gaps = 43/340 (12%)

Query: 63  DLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSP 122
           DL++L+   ++++        L +I+  K    +      V V G    A  +E      
Sbjct: 39  DLVILSAMIVQKE------DLLNQIQEAKRRNKR------VAVGGPYPTALPDEATGA-- 84

Query: 123 IVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAF--- 179
             + ++  +    LP  +     G  V    +    +   ++             A+   
Sbjct: 85  GADYLILDEGEITLPLFVNAIAQG--VTSGIFRAGGERPDVTTTPIPRFELLEFDAYAEM 142

Query: 180 -LTIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG 237
            +    GC   C FC +    G +  +++  Q++ E  +L + G      +  +      
Sbjct: 143 SVQFSRGCPFQCEFCDIIVLYGRKPRTKTPEQILAELNRLYELGWRRSIFMVDD------ 196

Query: 238 KGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM----SDCLIKAHGDLDVLMPYLHL 293
               G K      L  L       +  ++ +    +       L+ A    +     + L
Sbjct: 197 -NFIGNKRNVKLFLKELQPWMVAHQYPFSFATEASVDLANDQELMDAMVACN--FGAVFL 253

Query: 294 PVQSGSDRILKSMNR-RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352
            +++  +  L    + ++T     + +++I      + + + FI+GF GE        + 
Sbjct: 254 GIETPDEESLTLTQKYQNTRDSLSEAVNKITRT--GLRVMAGFIIGFDGEKAGAGARIVK 311

Query: 353 LVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLL 392
            V++     A          T   + L      VK  RL 
Sbjct: 312 FVEQTSIPTALFSMLQALPDTALWHRL------VKEGRLR 345


>gi|316932116|ref|YP_004107098.1| Radical SAM domain-containing protein [Rhodopseudomonas palustris
           DX-1]
 gi|315599830|gb|ADU42365.1| Radical SAM domain protein [Rhodopseudomonas palustris DX-1]
          Length = 677

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 45/243 (18%), Positives = 80/243 (32%), Gaps = 34/243 (13%)

Query: 161 ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLID 219
              S  D        +   +TI  GC   CTFC +    G  I SRS + ++ E  K+ D
Sbjct: 324 PHPSYGDAKIPAWDMIKTSVTIMRGCFGGCTFCSITEHEGRIIQSRSEASILQEIEKIRD 383

Query: 220 NGVCEITLL----GQNVNAWRGKGLDGE----------------------KCTFSDLLYS 253
                  ++    G   N +R    D                              L   
Sbjct: 384 KTPGFTGVISDIGGPTANMYRMACKDPNIESSCRKPSCVFPDICPNLNTSHDDLIRLYRK 443

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRR-- 309
           + E+KG+ ++   +    D++        +L    +  YL +  +      L  M +   
Sbjct: 444 VREVKGIKKVMVASGVRYDLAVKSPAYIKELVNHHVGGYLKIAPEHTERGPLDKMMKPGI 503

Query: 310 HTAYEYRQIID-RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY--AQAFSFK 366
            T + ++Q+ +   +       +   FI   PG +D+D       + +  Y   Q  +F 
Sbjct: 504 GTYHRFKQMFEAAAKQAGKQYYLIPYFIAAHPGTSDEDMMNLALWLKRNRYRADQVQTFL 563

Query: 367 YSP 369
            SP
Sbjct: 564 PSP 566


>gi|262402711|ref|ZP_06079272.1| lipoate synthase [Vibrio sp. RC586]
 gi|262351493|gb|EEZ00626.1| lipoate synthase [Vibrio sp. RC586]
          Length = 315

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/211 (15%), Positives = 71/211 (33%), Gaps = 12/211 (5%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V    G   +    +    A+ + D  +  + +   +    R    DG   
Sbjct: 88  CTRRCPFCDV--AHGRPNAPEAEEPKKLAQTIHDMKLKYVVITSVD----RDDLRDGGAQ 141

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
            F+D    +  +   +R+       R   +  ++A  D     P +       + R+ + 
Sbjct: 142 HFADCNREIRALNPSIRIETLVPDFRGRMEVALEALKDNP---PDVFNHNLETAPRLYRK 198

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           +          +++ + +   P++   S  ++G  GET ++    +  +   G       
Sbjct: 199 VRPGANYKWSLELLRQFKEQHPEVPTKSGLMMGL-GETKEEIVEVLKDLRAHGVTMLTLG 257

Query: 366 KYSP--RLGTPGSNMLEQVDENVKAERLLCL 394
           +Y    R   P    +   + +   E  L L
Sbjct: 258 QYLAPSRHHLPVERYVPPAEFDELKEIALEL 288


>gi|167625931|ref|YP_001676225.1| hypothetical protein Shal_4026 [Shewanella halifaxensis HAW-EB4]
 gi|167355953|gb|ABZ78566.1| Radical SAM domain protein [Shewanella halifaxensis HAW-EB4]
          Length = 777

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 41/228 (17%), Positives = 80/228 (35%), Gaps = 34/228 (14%)

Query: 176 VTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDN--GVCEIT--LLGQ 230
           + A + I  GC   C+FC +    G  I SRS   +V E + +     G   +   L G 
Sbjct: 375 IKASINIMRGCFGGCSFCSITEHEGRIIQSRSQESIVKEIKDIQQKVPGFTGVISDLGGP 434

Query: 231 NVNAWR----------------------GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
             N +                          +D +     DL  +  ++ G+ ++   + 
Sbjct: 435 TANMYHLGCTSEKAESTCRRQSCIYPSICGHMDTDHQPTIDLYRAARDVPGIKKVLIASG 494

Query: 269 HPRDMSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRR--HTAYEYRQIIDRI-R 323
              D++    +   +L    +  YL +  +   +  L  M +    T  +++ + D+  +
Sbjct: 495 VRYDLATEDPRYVKELATHHVGGYLKIAPEHTEEGPLNKMMKPGMGTYDKFKTLFDKYSQ 554

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLV--DKIGYAQAFSFKYSP 369
                  +   FI   PG T++D       +  +K    Q  +F  SP
Sbjct: 555 EAGKKQYLIPYFISAHPGTTNEDMVNLALWLKAEKFKLDQVQNFYPSP 602


>gi|22298312|ref|NP_681559.1| hypothetical protein tll0770 [Thermosynechococcus elongatus BP-1]
 gi|22294491|dbj|BAC08321.1| tll0770 [Thermosynechococcus elongatus BP-1]
          Length = 561

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 43/337 (12%), Positives = 100/337 (29%), Gaps = 43/337 (12%)

Query: 58  SMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEI 117
               AD+++ +  HI+          +  I +        GG     V+ C         
Sbjct: 91  DYAWADIVITSGMHIQRP----QILEINEIAHRHGKLTALGGPS---VSSC--------- 134

Query: 118 LRRSPIVNVVVGPQTYYRLPELLE------RARFGKRVVDTDYSVEDKFERLSIVDGGYN 171
               P V+++   +      +++         R  ++++    +     E          
Sbjct: 135 PEYYPDVDILHLGELGDATDKMIAYFDEYGSQRPPQQLIFATTARLPLSEFPVPAYQHVR 194

Query: 172 RKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVCEITLLGQ 230
            +      +    GC   C FC +P   G     ++  Q++ E   ++ +G         
Sbjct: 195 MENYFLGSIQFSSGCPFRCEFCDIPELYGRNPRLKTPQQILKELDTMLASG--------- 245

Query: 231 NVNAWRGKGLD--GEKCTFSDLLYSLSEIKGLVRLRYTTSHP----RDMSDCLIKAHGDL 284
           N  A      +  G +    +LL  L + +         +         S  L++   + 
Sbjct: 246 NPGAVYFVDDNFIGNRRAVMELLPHLIDWQKANGYPLQFACEATLNIAQSPKLLEMMRE- 304

Query: 285 DVLMPYLHLPVQSGSDRILKSMNRRHT-AYEYRQIIDRIRSVRPDIAISSDFIVGFPGET 343
                 +   +++     L ++++    +    Q +  + S    + + S  I+GF  +T
Sbjct: 305 -AYFCTIFCGIETPEPEALHAIHKDQNLSMPILQAVQTLNSY--GMEVVSGIIIGFDTDT 361

Query: 344 DDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
                  ++ +                  TP    LE
Sbjct: 362 PQTGDRILEFIRASHIPTLTINLLHALPRTPLWRRLE 398


>gi|291008542|ref|ZP_06566515.1| putative Fe-S oxidoreductase [Saccharopolyspora erythraea NRRL
           2338]
          Length = 652

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 61/410 (14%), Positives = 125/410 (30%), Gaps = 77/410 (18%)

Query: 71  HIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGP 130
            +     E V      IR  K      G D L++           +    S   +  +  
Sbjct: 164 AVLGDGEEAVLEVTEAIRKWKAEGEPGGRDELLLRLAESGGVYVPKFYDVSYGADGAI-- 221

Query: 131 QTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190
           ++     E +    F +  ++ D     K   + + +  + R       + I  GC + C
Sbjct: 222 ESVVPNDERVPYRVFKRTTMELDDWPYPKKPLVPLAESVHERMS-----VEIFRGCTRGC 276

Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLG---------QNVNAWRGKGL 240
            FC           RS+  + +  ++ ++  G  E+ LL           ++        
Sbjct: 277 RFCQAGMITRPVRERSIEGIGEMVQRGLEATGFEEVGLLSLSSADHSEIADITKGLADRY 336

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300
           +G     S     +                   +  L             L    + GS+
Sbjct: 337 EGTGTGLSLPSTRVDA----------------FNIDLANELSRNGR-RSGLTFAPEGGSE 379

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIA--ISSDFIVGFPGETDDDFRATMDLVDKI- 357
           RI + +N+  +    + +I  + +   +    +   F+ G P ETD+D     ++  ++ 
Sbjct: 380 RIRRVINKMVSE---KDLIRTVSAAFANGWRQVKLYFMCGLPTETDEDVLQIAEMAKEVI 436

Query: 358 --------GYAQAFSF---KYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLR------- 399
                         +     + P+  TP      Q D +   ERL  L++ +        
Sbjct: 437 RAGRAASGRKDIRCTISIGGFVPKPHTP-FQWASQCDPDTVDERLRKLRQAVNSDRGLGR 495

Query: 400 --------------EQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWL 435
                         E  +S  D  +G++    IE+  +E G+  G +   
Sbjct: 496 NIGMRYHDGKPSLVEGLLSRGDRRLGRV----IERVWREGGRFDGWNEHF 541


>gi|262172045|ref|ZP_06039723.1| lipoate synthase [Vibrio mimicus MB-451]
 gi|261893121|gb|EEY39107.1| lipoate synthase [Vibrio mimicus MB-451]
          Length = 315

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/211 (15%), Positives = 71/211 (33%), Gaps = 12/211 (5%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V    G   +    +    A+ + D  +  + +   +    R    DG   
Sbjct: 88  CTRRCPFCDV--AHGRPNAPETEEPKKLAQTIHDMKLKYVVITSVD----RDDLRDGGAQ 141

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
            F+D    +  +   +R+       R   +  ++A  D     P +       + R+ + 
Sbjct: 142 HFADCNREIRALNPNIRIETLVPDFRGRMEVALEALKDNP---PDVFNHNLETAPRLYRK 198

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           +          +++ + +   P++   S  ++G  GET ++    +  +   G       
Sbjct: 199 VRPGANYKWSLELLRQFKEQHPNVPTKSGLMMGL-GETKEEIVEVLKDLRAHGVTMLTLG 257

Query: 366 KYSP--RLGTPGSNMLEQVDENVKAERLLCL 394
           +Y    R   P    +   + +   E  L L
Sbjct: 258 QYLAPSRHHLPVERYVPPAEFDELKEIALEL 288


>gi|238764293|ref|ZP_04625244.1| Oxygen-independent coproporphyrinogen III oxidase [Yersinia
           kristensenii ATCC 33638]
 gi|238697444|gb|EEP90210.1| Oxygen-independent coproporphyrinogen III oxidase [Yersinia
           kristensenii ATCC 33638]
          Length = 459

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 43/246 (17%), Positives = 87/246 (35%), Gaps = 16/246 (6%)

Query: 173 KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEI--TLLGQ 230
           +R ++ ++ I   C K C FC        +  +   + +    K I           + Q
Sbjct: 52  QRPLSLYVHIPF-CHKLCYFCGCNKLVTRQQHK-ADEYLAVLEKEIRQRAALFAGRQVSQ 109

Query: 231 NVNAWRGKGLDGEKCTFSDLLYSLSE----IKGLVRLRYTTSHPRDMSDCLIKAHGDLDV 286
            ++   G      K   S L+  L E    + G  +       PR++   ++        
Sbjct: 110 -MHWGGGTPTYLNKTQISHLMNLLRENFDFLPGAEQSIEV--DPREIELDVLDHLRAEG- 165

Query: 287 LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDD 346
               L + VQ  +  + + +NR         +I R +++  + + + D I G P +T + 
Sbjct: 166 -FNRLSMGVQDFNKEVQRLVNREQDEDFIFALIARAKALGFN-STNIDLIYGLPKQTPES 223

Query: 347 FRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSF 405
           F  T+  V ++   +   F Y+       +   ++  D     +RL  LQ  +     S 
Sbjct: 224 FAFTLKRVAELSPDRLSVFNYAHLPSLFAAQRKIKDADLPTAEQRLDILQHTISFLTESG 283

Query: 406 NDACVG 411
               +G
Sbjct: 284 YQ-FIG 288


>gi|257466116|ref|ZP_05630427.1| oxygen-independent coproporphyrinogen III oxidase [Fusobacterium
           gonidiaformans ATCC 25563]
 gi|315917273|ref|ZP_07913513.1| conserved hypothetical protein [Fusobacterium gonidiaformans ATCC
           25563]
 gi|313691148|gb|EFS27983.1| conserved hypothetical protein [Fusobacterium gonidiaformans ATCC
           25563]
          Length = 365

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 35/234 (14%), Positives = 80/234 (34%), Gaps = 29/234 (12%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C   C +C      G          ++  ++ ++    EI+L     +++      G   
Sbjct: 19  CLHKCEYCDFTSFSGK---------LNWKKRYLEALYQEISLYE---HSYYDTIYFGGGT 66

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP-------VQSG 298
                   +++I  L           +++        +L  L  Y  +        +QS 
Sbjct: 67  PSLLEGKEIAKILEL----LPHDEKTEITVECNPKTLNLKKLQDYFEIGVNRLSIGIQSM 122

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           +++ LK + R HT  E +++    R +     IS D +   P +T ++    ++    + 
Sbjct: 123 NEKYLKMLGRLHTVQEAKEVFQMAREIGFQ-NISVDMMFALPTQTLEEVEEDIENFLCLD 181

Query: 359 YAQAFSFKYSPRLGTPGSNMLEQ-----VDENVKAERLLCLQKKLREQQVSFND 407
                 +       TP    LE+      + +V+AE    + + ++E      +
Sbjct: 182 ADHISIYSLIWEENTPFFQKLEKGIYQRTENDVEAEMYQKIIETMKENSYEHYE 235


>gi|297618555|ref|YP_003706660.1| Radical SAM domain-containing protein [Methanococcus voltae A3]
 gi|297618615|ref|YP_003706720.1| Radical SAM domain-containing protein [Methanococcus voltae A3]
 gi|297377532|gb|ADI35687.1| Radical SAM domain protein [Methanococcus voltae A3]
 gi|297377592|gb|ADI35747.1| Radical SAM domain protein [Methanococcus voltae A3]
          Length = 553

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 60/391 (15%), Positives = 125/391 (31%), Gaps = 54/391 (13%)

Query: 124 VNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYN--RKRGVTAFLT 181
           +N+ + P    +  E+ E A  G  +V    +  +    +    G        G      
Sbjct: 169 INLKINPLKTRKYDEISEFAILGANIVKMHPNYPNIILEIETYRGCSRALSAEGNNFNDN 228

Query: 182 IQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG-- 239
               C+  C+FC  P   G    R +S V+DE + L  NG+    +  Q           
Sbjct: 229 YDSNCNCGCSFCTEPKRYGSPKFRIISDVIDEVKALAQNGIKYYRVGRQPCIFSYMSEES 288

Query: 240 -----LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY---- 290
                          L   + ++     L    ++P  ++   I++      L+ Y    
Sbjct: 289 EKYEIPKPNPEALEKLFKGIVDVANPKILHIDNANPSVIARHEIESREIAKTLVKYCTGG 348

Query: 291 --LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV--------RPDIAISSDFIVGFP 340
                 V+S   ++++         +    +  +            P +    + + G  
Sbjct: 349 NTAAFGVESFDKKVIEKNCLLTEPEDVFNAVQILNEEGGKRSDTGLPYLLPGINLLFGLK 408

Query: 341 GETDDDFRATMDLVDKIGYA------QAFSFKYSPRLGTPGSNMLEQVDENVKAE---RL 391
           GE  + F    + + +I Y       +    +  P  GT         ++++K     R 
Sbjct: 409 GENKNTFETNYENLKEI-YDLGYMLRRINIRQVVPFFGT------NITEKDIKKAQKFRH 461

Query: 392 LCL--QKKLREQQVS-FNDACV--GQIIE-VLIEKHGKEKGKLVGR----SPWLQSVVLN 441
             L  ++K+R +  +      V  G +++ V IE   +      GR     P L  +  +
Sbjct: 462 KFLTFREKIRNEVDNPMLKRMVPKGTVLKNVFIE-LKERDNLYFGRQFGSYPLLIGIDTS 520

Query: 442 SKNHN----IGDIIKVRITDVKISTLYGELV 468
           S        IG    + +      ++ G+++
Sbjct: 521 SDEDKKIIEIGKYFDIEVIGYGKRSITGKII 551


>gi|152982880|ref|YP_001351776.1| Mg-protoporphyrin IX monomethyl ester oxidative cyclase
           [Janthinobacterium sp. Marseille]
 gi|151282957|gb|ABR91367.1| Mg-protoporphyrin IX monomethyl ester oxidative cyclase
           [Janthinobacterium sp. Marseille]
          Length = 541

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 45/289 (15%), Positives = 93/289 (32%), Gaps = 10/289 (3%)

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
            L     +   ++++V+ G     E  E      + + ++        P+L ++   G +
Sbjct: 115 KLVALLKRVAPEVVIVLGGPEVSYESAE-QSIVQLADYLITGWGDVTFPQLCKQILHGPK 173

Query: 149 VVDTDYS-VEDKFERLSIVDGGYNRK--RGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            +   ++ V+     L++  G Y+ +  +  T ++    GC   C FC+    +      
Sbjct: 174 PLMKIHAGVQPPLAELTMPYGLYSDEDIKNRTLYVEASRGCPFKCEFCLSALDKTA-WPY 232

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            L   + E   L   G      + +  N      L          L  L          +
Sbjct: 233 DLDLFLGELETLHARGARLFKFVDRTFNLNIKSSLK----IMQFFLDKLEAHPEDPVYAH 288

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
               P  + D L +             + +QS +  +   ++R+    +  + I  +   
Sbjct: 289 FEVVPDHLPDALKEGIKKFPAGTLQFEIGIQSFNPEVQTLVSRKQNNEKAAENIRWLCEN 348

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
                +  D I G PGE    F    D + ++G  +          GTP
Sbjct: 349 S-HAHLHVDLIAGLPGEDVASFARGFDRLLELGPHEIQFGILKRLRGTP 396


>gi|119370265|gb|ABL68060.1| putative Fe-S oxidoreductase [butyrate-producing bacterium L2-50]
          Length = 414

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 41/262 (15%), Positives = 86/262 (32%), Gaps = 45/262 (17%)

Query: 160 FERLSIVDGGYNRKRGVTAFLTI------QEGCDKFCTFCVVPYTRGIEI-SRSLSQVVD 212
           ++ ++     Y +  G+ A   +        GC   C+FC + + +G  + +RS   +++
Sbjct: 16  YDYMNTYHPMYEKDGGIPAIAEVKFSLASNRGCFGGCSFCALTFHQGRIVQTRSHESIIE 75

Query: 213 EARKL------------------------IDNGVCEITL-LGQNVNAWRGKGLDGEKCTF 247
           EA+++                         +  +        Q +     + L+     +
Sbjct: 76  EAKRMTKDPEFKGYIHDVGGPTANFRHPACEKQMKYGVCQNKQCLFPKPCQNLNASHKDY 135

Query: 248 SDLLYSLSEIKGLVR------LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
            +LL  L  I G+ +      +R+           L +       +   L +  +  SD 
Sbjct: 136 VELLRKLRRIPGVKKVFVRSGIRFDYLLADHDDTFLRELCRYH--ISGQLRVAPEHISDN 193

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSD----FIVGFPGETDDDFRATMDLVDKI 357
           +LK M +  +   Y   I +   +     +        +   PG T  D  A  + +  I
Sbjct: 194 VLKYMGKP-SNQVYETFIKKYEKINEQYGLKQYAVPYLMSSHPGSTLKDAVALAEYIRDI 252

Query: 358 GYAQAFSFKYSPRLGTPGSNML 379
           GY       + P   T  + M 
Sbjct: 253 GYMPEQVQDFYPTPSTISTCMY 274


>gi|17229596|ref|NP_486144.1| hypothetical protein alr2104 [Nostoc sp. PCC 7120]
 gi|17131195|dbj|BAB73803.1| alr2104 [Nostoc sp. PCC 7120]
          Length = 529

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 53/368 (14%), Positives = 112/368 (30%), Gaps = 53/368 (14%)

Query: 34  CQMNVY-DSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92
           C  NV  ++                  +  DL++L+   +++               L  
Sbjct: 51  CDRNVNLETEA--------------DWEWCDLVILSAMLVQKP----------DFHALIQ 86

Query: 93  SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG-KRVVD 151
             ++ G    V V G    +  ++ L      + ++  +    +P+ LE    G ++ + 
Sbjct: 87  KAVRLGK--KVAVGGPYPTSIPQDALNS--GAHYLILDEGELTIPQFLEALNQGQEQGIF 142

Query: 152 TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE-ISRSLSQV 210
                 D  +          R   +   +    GC   C FC +    G +  ++   Q 
Sbjct: 143 RSPEKPDVSQSPMPRFDLLQRDAYLMMAIQFSRGCPFNCEFCDIITLYGRKPRTKEPQQT 202

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270
           + E + L D G      +  +          G +     LL  L          +T    
Sbjct: 203 IAELQTLYDLGWRGSLFIVDD-------NFIGNQRNVKRLLQELIPWMKQHNYPFTFITE 255

Query: 271 RDM----SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR-RHTAYEYRQIIDRIRSV 325
             +     + +++   +       + L +++     L+   + ++T     +   +I   
Sbjct: 256 ASVNLAEDEEMLQLMNEAGFYA--VFLGIETPDQDSLQVTQKLQNTRNPLVEACRKINEA 313

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
              + I + FI+GF GE           V++    Q           T     L+     
Sbjct: 314 --GMLIYAGFILGFDGERPGAGERIQAFVEQTNIPQPMLGILQALPNTALWTRLQ----- 366

Query: 386 VKAERLLC 393
            K +RLL 
Sbjct: 367 -KEQRLLE 373


>gi|133910832|emb|CAM00945.1| putative lipoic acid synthetase [Saccharopolyspora erythraea NRRL
           2338]
          Length = 323

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 42/252 (16%), Positives = 87/252 (34%), Gaps = 29/252 (11%)

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQ-EGCDKFCTFCVVPYTRGIEISRSLSQVVD 212
           ++V ++    +I +   +R+    A   I  + C + C FC +   +  E+   + +   
Sbjct: 42  HTVCEEAGCPNIFECWEDRE----ATFLIGGDQCTRRCDFCQIDTGKPAEL--DVEEPRR 95

Query: 213 EARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
            A  +   G+   T+ G      R    DG    +++ +  + ++     +         
Sbjct: 96  VAESVQAMGLRYSTVTGV----ARDDLEDGGAWLYAETVRQIHQLNPGTGVELLIPDFNA 151

Query: 273 MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAIS 332
               L +  G    ++ +    V     RI K +          ++I R R     +   
Sbjct: 152 DPGQLAEVFGSRPEVLAHNVETV----PRIFKRIRPAFRYERSLEVITRARE--DGLVTK 205

Query: 333 SDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY---SPRLGTPGSNMLEQVDENVKAE 389
           S+ I+G  GET ++    +  + + G       +Y   SPR           V+  VK E
Sbjct: 206 SNLILGM-GETPEEVTEALRDLREAGTDIITITQYLRPSPRHH--------PVERWVKPE 256

Query: 390 RLLCLQKKLREQ 401
             +   +   E 
Sbjct: 257 EFVEHTRTAEEL 268


>gi|148652706|ref|YP_001279799.1| lipoyl synthase [Psychrobacter sp. PRwf-1]
 gi|172048519|sp|A5WDV8|LIPA_PSYWF RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|148571790|gb|ABQ93849.1| lipoic acid synthetase [Psychrobacter sp. PRwf-1]
          Length = 347

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 39/215 (18%), Positives = 74/215 (34%), Gaps = 26/215 (12%)

Query: 161 ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN 220
           E  +  +       G   F+ + + C + C FC V + R  E+     +    A  +   
Sbjct: 78  EEAACPNLPQCFGDGTATFMIMGDICTRRCPFCDVAHGRPNEL--DKDEPRHTAETIQGL 135

Query: 221 GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPR---DMSDCL 277
           G+    +   +    R    DG    F D++     +     +       R   D++  L
Sbjct: 136 GLKYAVITSVD----RDDLKDGGAQHFVDVINESKALSPNCLIEILVPDFRGRMDVALDL 191

Query: 278 I-----KAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAIS 332
           +              +P L+   + GSD                 ++ + ++ RPDIA  
Sbjct: 192 LTETAPDVFNHNIETVPRLYKAFRPGSDYQ-----------HSLDLLKQYKARRPDIATK 240

Query: 333 SDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
             F+VG  GET+++  A +D +           +Y
Sbjct: 241 CGFMVGL-GETEEEVYALLDDLKAHDVDMITIGQY 274


>gi|27364014|ref|NP_759542.1| hypothetical protein VV1_0552 [Vibrio vulnificus CMCP6]
 gi|27360131|gb|AAO09069.1| hypothetical protein VV1_0552 [Vibrio vulnificus CMCP6]
          Length = 318

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 35/134 (26%), Positives = 56/134 (41%), Gaps = 13/134 (9%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +L L +Q+ S+  LK +NR H    Y +I  R R++   I + +  IVG P E+ DD  A
Sbjct: 141 WLELGLQTASNSTLKRINRGHDFECYAEITQRARAL--GIKVCTHLIVGLPKESRDDNFA 198

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDAC 409
           T++ V ++G             G+  +          KA R   L     EQ V      
Sbjct: 199 TLEKVIEVGADGIKLHGLHIVEGSTMA----------KAWRAGKLDAPELEQYVEIACEM 248

Query: 410 VGQI-IEVLIEKHG 422
           + +   EV+  +  
Sbjct: 249 IRRTPPEVIFHRVS 262


>gi|89100567|ref|ZP_01173427.1| lipoyl synthase [Bacillus sp. NRRL B-14911]
 gi|89084754|gb|EAR63895.1| lipoyl synthase [Bacillus sp. NRRL B-14911]
          Length = 281

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 38/215 (17%), Positives = 77/215 (35%), Gaps = 15/215 (6%)

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEG-CDKFCTFCVVPYTRGIEISRSLSQVVD 212
           ++V ++ +  +I +    R+   TA   I  G C + C FC V      E+   L +   
Sbjct: 12  HTVCEEAKCPNIHECWAVRR---TATFMILGGVCTRACRFCAVKTGLPNEL--DLQEPER 66

Query: 213 EARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
            A  +    +    +        R    DG    F++ + ++        +    S    
Sbjct: 67  VADSVALMNLKHAVVTAV----ARDDLKDGGAAVFAETVRAIRRKSPFTSIEVLPSDMGG 122

Query: 273 MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAIS 332
           + + L         ++ +    V+  +      +  R T     + + R + ++PDI   
Sbjct: 123 VYENLKMLMDARPDILNHNIETVERLTP----RVRARATYKRSLEFLKRAKEMQPDIPTK 178

Query: 333 SDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           S  ++G  GET ++  ATMD +           +Y
Sbjct: 179 SSLMIGL-GETKEEIIATMDDLRAHDVDIMTIGQY 212


>gi|313203417|ref|YP_004042074.1| radical sam domain protein [Paludibacter propionicigenes WB4]
 gi|312442733|gb|ADQ79089.1| Radical SAM domain protein [Paludibacter propionicigenes WB4]
          Length = 593

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 38/228 (16%), Positives = 72/228 (31%), Gaps = 27/228 (11%)

Query: 167 DGGYNRKRGVTAFLTIQEGCDKF-CTFCVVPYTR-GIEISRSLSQVVDEARKLIDNGVCE 224
                   G    + +  GC    C FC       G   +  +  +VD    ++      
Sbjct: 329 PMHALWSNGRWNKMMLAHGCYWGKCAFCDGSLDYIGRYEAAPIELIVDRMEAIMQQ---- 384

Query: 225 ITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL 284
               GQ  + +              L   +   K  V         +  +  L       
Sbjct: 385 ---TGQ--SGFHFVDEAAPPALLRKLAEEILRRKITVSYWTNVRFEKSFTPELCYILSQS 439

Query: 285 DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETD 344
             +   +   ++  S RILK +N+  T    R+ +     V   I   +  + GFP ET+
Sbjct: 440 GCIA--ISGGLEVASPRILKLINKGITIETARESMKNFAEV--GIMTHAYLMYGFPTETE 495

Query: 345 DDFRATMD----LVDKIGYAQAFSFKY-----SP---RLGTPGSNMLE 380
            +   +++    L ++     AF  +Y     SP   +  T G+  ++
Sbjct: 496 KETIESLEVVRNLFEEGYIQSAFWHRYAMTIHSPSGQQPETVGAKHID 543


>gi|269961545|ref|ZP_06175907.1| Lipoate synthase [Vibrio harveyi 1DA3]
 gi|269833586|gb|EEZ87683.1| Lipoate synthase [Vibrio harveyi 1DA3]
          Length = 321

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/182 (14%), Positives = 62/182 (34%), Gaps = 10/182 (5%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V    G  ++    +    A+ + D  +  + +   +    R    DG   
Sbjct: 94  CTRRCPFCDV--AHGRPLAVEAEEPKKLAKTIADMKLKYVVITSVD----RDDLRDGGAE 147

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
            F++    + E+   +++       R   D  +    D     P +       + R+ + 
Sbjct: 148 HFANCNREIRELNPHIKIETLVPDFRGRMDVALDLMKDNP---PDVFNHNLETAPRLYRK 204

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
                      Q++ + +   P++   S  ++G  GET ++    +  +   G       
Sbjct: 205 ARPGANYKWSLQLLQKFKEQHPNVPTKSGLMMGL-GETKEEIVEVLKDLRAHGVTMLTLG 263

Query: 366 KY 367
           +Y
Sbjct: 264 QY 265


>gi|291544313|emb|CBL17422.1| Histone acetyltransferase [Ruminococcus sp. 18P13]
          Length = 344

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 35/199 (17%), Positives = 62/199 (31%), Gaps = 9/199 (4%)

Query: 185 GCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK 244
           GC   C+FC      G   + S  +V    R  + +           +  + G      +
Sbjct: 14  GCPHRCSFCDQHCISGSVHAPSPEEVTALCRDTLPSMGDPAH---TQIAFFGGSFTALPR 70

Query: 245 CTFSDLLYSLSEI--KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
                LL ++      GL      ++ P  M            V    + L  QS  D +
Sbjct: 71  DYMLGLLEAVQPFLRDGLAGGIRLSTRPDYMDRETAALLASYGVTA--VELGAQSLWDPV 128

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           L+   R HTA +  +    +R+   D+ +    + G  G T +   AT      +     
Sbjct: 129 LEVNERGHTARDVYRAAACVRAQ--DMELGLQMMTGLYGSTPETDLATGRGCIAMKPDTM 186

Query: 363 FSFKYSPRLGTPGSNMLEQ 381
             +      GT  + +   
Sbjct: 187 RIYPTVVLPGTRLARLYAD 205


>gi|226324471|ref|ZP_03799989.1| hypothetical protein COPCOM_02252 [Coprococcus comes ATCC 27758]
 gi|225206919|gb|EEG89273.1| hypothetical protein COPCOM_02252 [Coprococcus comes ATCC 27758]
          Length = 393

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/212 (18%), Positives = 73/212 (34%), Gaps = 22/212 (10%)

Query: 186 CDKFCTFC--VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
           C K C +C  +       E    +  +VDE R   D  V    ++             G 
Sbjct: 13  CVKKCAYCDFLSGPAGEKEKEEYVKMLVDEIRNCPD-TVQNYRVISI---------FFGG 62

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY-------LHLPVQ 296
                     +  +   VR  +T     +++  +       + L  Y       L + +Q
Sbjct: 63  GTPSLLTGEQIGRLMDTVREIFTLDEDAEITMEMNPGTVTEEKLRKYRQAGVNRLSIGLQ 122

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
           S +D  L+ + R HT  E+ +     R+      I+ D I   PG+T + +R T++ V  
Sbjct: 123 SVNDEELRLLGRIHTYEEFLEAYHLARAN-GFANINVDLISAIPGQTVESWRRTLEQVMA 181

Query: 357 IGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           +      ++      GT        V++  K 
Sbjct: 182 LFPEHISAYSLILEEGTTFYKKY--VEDEAKE 211


>gi|146339630|ref|YP_001204678.1| hypothetical protein BRADO2623 [Bradyrhizobium sp. ORS278]
 gi|146192436|emb|CAL76441.1| Conserved hypothetical protein [Bradyrhizobium sp. ORS278]
          Length = 528

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 60/344 (17%), Positives = 112/344 (32%), Gaps = 36/344 (10%)

Query: 75  KAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYY 134
           +A       + R +     R     DL V + G    A  +      P  + +   +   
Sbjct: 77  EAVFVSGMHIQRQQMNDICRRAHAFDLPVALGGPSVSACPD----YYPDFDYLHVGELGD 132

Query: 135 RLPELLER-----ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKF 189
               L+ER     +R   +VV          E            +     +    GC   
Sbjct: 133 ATDALIERLAHDVSRPASQVVLRTGERVAMTEFPVPAYELAEVSKYFLGSIQYSSGCPYQ 192

Query: 190 CTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVC-EITLLGQNVNAWRGKGLDGEKCTF 247
           C FC +P   G     ++  Q++ E  KL + GV   +  +  N          G +   
Sbjct: 193 CEFCDIPGLYGRNPRIKTPQQIIAELDKLRECGVTGSVYFVDDNFI--------GNRKAA 244

Query: 248 SDLLYSLSEIKG----LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
            DLL  L E +     ++RL    +        +++   +   +   +   +++     L
Sbjct: 245 MDLLPHLIEWQKRTGYVMRLACEATLNIAKRPEILEKMREAYFI--TIFCGIETPDPDAL 302

Query: 304 KSMNRRHTAYEYRQIIDRIRSVR-PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
            +M + H       I++ IR++    + + S  I+G   +T     A +  V++      
Sbjct: 303 TAMQKDHN--MMVPILEGIRTINSYGMEVVSGIIMGLDTDTPQTADALLQFVEESRIPLL 360

Query: 363 FSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFN 406
                     TP  + LE      +  RL  LQ   R+  + F 
Sbjct: 361 TINLLQALPKTPLWDRLE------REGRL--LQDDSRDSNIKFL 396


>gi|317061450|ref|ZP_07925935.1| radical SAM domain-containing protein [Fusobacterium sp. D12]
 gi|313687126|gb|EFS23961.1| radical SAM domain-containing protein [Fusobacterium sp. D12]
          Length = 373

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 41/238 (17%), Positives = 78/238 (32%), Gaps = 30/238 (12%)

Query: 177 TAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR 236
            A + IQ GC + C FC           RSL + ++   K+I           Q+     
Sbjct: 24  RATVEIQRGCSRGCRFCQAGIVYRPVRERSLEKNLELIEKMI-----------QDTGYSE 72

Query: 237 GKGLDGEKCTFSDLLYSLSEIK-----GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL 291
                     +S++   ++ IK       V +   +      S  + ++           
Sbjct: 73  VSLSSLSSSDYSNIHQLIAGIKANPLNKNVGVSLPSLRMNPDSVRVAESISGGKR--TGF 130

Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351
               ++GS R+   +N+  T  E             D  +   F++G P ET++D  A  
Sbjct: 131 TFAPEAGSQRMRDIINKGVTEEEILLTAKEAVQAGWD-NLKFYFMIGLPFETEEDVLAIH 189

Query: 352 DLVDKIGY----------AQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLR 399
            L  K+ +                 + P+  TP +   +Q+       +   L++  R
Sbjct: 190 GLAKKVMFQCRPISKRVQVTVSVSNFVPKPHTPFA-WQKQMGFEEMHHKHTLLKEVFR 246


>gi|304382761|ref|ZP_07365245.1| radical SAM domain protein [Prevotella marshii DSM 16973]
 gi|304336080|gb|EFM02326.1| radical SAM domain protein [Prevotella marshii DSM 16973]
          Length = 632

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 64/398 (16%), Positives = 118/398 (29%), Gaps = 101/398 (25%)

Query: 62  ADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRS 121
           ADLI+     + EK   ++   L   R++K  R       L         A  EEI    
Sbjct: 172 ADLIIY---GMGEKPVLQLCKELAAGRSIKEVRDIPQTVYL---------ARKEEIPHGI 219

Query: 122 PIVNVVVGPQ---------------------TYYRLPELLERARFGKRVVDTDYSVEDKF 160
              ++V+                               L++       VV+  Y      
Sbjct: 220 TEADIVLHSHEKCLRDKRAEAENFRYIEEESNKMHAQRLIQAVEGRYAVVNPPYPPMTSE 279

Query: 161 ERLSIVDGGYNRKRGVT-------AFLTI------QEGCDKFCTFCVVPYTRGIEI-SRS 206
           E  +  D  Y R            A+  I        GC   C FC +   +G  I SRS
Sbjct: 280 ELDASFDLPYTRLPHPKYKNKRLPAYEMIKFSVNLHRGCFGGCAFCTISAHQGKFIASRS 339

Query: 207 LSQVVDEARKLIDN-------------GVCEITLLGQN------------VNAWRGKGLD 241
              ++ E +++ID                    + G+N            +N      L+
Sbjct: 340 KESILKEVKQVIDMPDFKGYLSDLGGPSANMYAMAGRNLKLCERCKRPSCINPAICPNLN 399

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYT-----------------TSHPRDMSDCLIKAHGDL 284
            +     D+  ++  + G+ +                         R+ +  LI+     
Sbjct: 400 TDHSPLLDIYRAVDRLPGIKKSFIGSGVRYDLLLHRSKDEQVNQSAREYTRELIR----- 454

Query: 285 DVLMPYLHLPVQSGSDRILKSMNRR-----HTAYEYRQIIDRIRSVRPDIAISSDFIVGF 339
           + +   L +  +  SD +L  M +      +T       I++  ++R  I     FI   
Sbjct: 455 NHVSGRLKVAPEHTSDNVLHLMRKPSFEQFYTFKRIFDTINKEENLRQQIIPY--FISSH 512

Query: 340 PGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
           PG  ++D         ++ +       ++P   T  + 
Sbjct: 513 PGCREEDMADLAVKTKRLDFRLEQIQDFTPTPMTVSTE 550


>gi|190575879|ref|YP_001973724.1| lipoyl synthase [Stenotrophomonas maltophilia K279a]
 gi|229830551|sp|B2FUS8|LIPA_STRMK RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|190013801|emb|CAQ47438.1| putative lipoic acid synthetase [Stenotrophomonas maltophilia
           K279a]
          Length = 336

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 34/212 (16%), Positives = 72/212 (33%), Gaps = 18/212 (8%)

Query: 161 ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS--QVVDEARKLI 218
           E  S  +       G   F+ + E C + C+FC V + R           +     + + 
Sbjct: 82  EEASCPNIHECFGHGTATFMILGEVCTRRCSFCDVAHGRPK----PPDANEPASLGQTVA 137

Query: 219 DNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD---MSD 275
           D G+  + +   +    R    DG    F D + ++ E     R+   T   R    M  
Sbjct: 138 DMGLKYVVVTSVD----RDDLRDGGAQHFVDCITAIREKSPGTRIEVLTPDFRGKGRMER 193

Query: 276 CLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDF 335
            L     +   +  +    +++  D   +++           ++   ++  PD+   S  
Sbjct: 194 ALEILAQNPPDVFNH---NIETVPDLY-RNVRPGADYQWSLNLLKNFKAQHPDVPTKSGI 249

Query: 336 IVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           ++G  GE  +  +AT+  +           +Y
Sbjct: 250 MLGL-GEDFEQIKATLRDLRAHDVDMITIGQY 280


>gi|182418423|ref|ZP_02949717.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Clostridium butyricum 5521]
 gi|237666446|ref|ZP_04526431.1| oxygen-independent coproporphyrinogen III oxidase [Clostridium
           butyricum E4 str. BoNT E BL5262]
 gi|182377805|gb|EDT75349.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Clostridium butyricum 5521]
 gi|237657645|gb|EEP55200.1| oxygen-independent coproporphyrinogen III oxidase [Clostridium
           butyricum E4 str. BoNT E BL5262]
          Length = 375

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/230 (16%), Positives = 85/230 (36%), Gaps = 13/230 (5%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQ-NVNAWRGKGLDGEK 244
           C + C +C  P   G E     S + +  R L +  + + +     ++    G      +
Sbjct: 13  CKQKCLYCDFPSYAGKE-----SLINEYIRALNEEILRKCSKYKIASIFVGGGTPSYLNE 67

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304
                LL +++ +     L +T        +           +   + + +Q+ +D +LK
Sbjct: 68  INLESLLKTINLLDFKDDLEFTIECNPGTLNEEKLVLMKNYNVNR-ISMGLQTTNDNLLK 126

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
            + R H+  E+++  ++ R    +  I+ D + G P +   D+ A+++ V  +      +
Sbjct: 127 EIGRIHSFEEFKKNYNQARKAGFE-NINVDLMFGLPNQHMKDWNASLEDVMSLEPDHISA 185

Query: 365 FKYSPRLGTPGSNMLE----QVDENVKAERLLCLQKKLREQQVSFNDACV 410
           +      GT   N+       +      ER + L  K   +   +N   +
Sbjct: 186 YSLIIEEGTCFYNLYNNDKLNIPNEE-EERSMYLFTKGFLEDYGYNQYEI 234


>gi|15606062|ref|NP_213439.1| hypothetical protein aq_632 [Aquifex aeolicus VF5]
 gi|2983247|gb|AAC06843.1| hypothetical protein aq_632 [Aquifex aeolicus VF5]
          Length = 317

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/192 (17%), Positives = 71/192 (36%), Gaps = 14/192 (7%)

Query: 188 KFCTFC---VVPYTRGIEISRSLS-QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
             CT+C     P      I   L  Q+ +   +       +I      +          +
Sbjct: 46  GGCTYCYDGSKPSMLSPVI--PLEVQIKEGIERAKKKYGEDIYFT---IYYQSYTNTYAD 100

Query: 244 KCTFSDLLYSLSEIKGLVRLRYT--TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
             T   +  +  + +G+V +          +    L++ + +   L  ++   +QS +  
Sbjct: 101 IETLKKVYDTALKFEGVVGIDVGTRPDCAPEEVLDLLEYYAN-KGLEVWVEYGLQSANFE 159

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
            LK +NR+H   ++   +  +R+ + ++ + +  I+G PGET +DF  T  L+  +    
Sbjct: 160 TLKKINRQHGVSDFVDAV--LRTKKRNLKVCAHMIIGLPGETREDFIETAKLIASLPIDG 217

Query: 362 AFSFKYSPRLGT 373
                     GT
Sbjct: 218 IKIHPLHVIKGT 229


>gi|83589418|ref|YP_429427.1| radical SAM family protein [Moorella thermoacetica ATCC 39073]
 gi|83572332|gb|ABC18884.1| Radical SAM [Moorella thermoacetica ATCC 39073]
          Length = 626

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 50/287 (17%), Positives = 101/287 (35%), Gaps = 32/287 (11%)

Query: 70  CHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVV----VAGCVAQAEGEEILRRSPIVN 125
           C +     E +  FL  +  LK   + +    ++     + G    +  +        V 
Sbjct: 161 CFLLGDGEEALPEFLNLVGQLKKEGLWDHRREVLDRIASLPGFYVPSFYDVTYNSDGTVA 220

Query: 126 VVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEG 185
            VV  +     P + ER    + + D D +       +  ++  ++R       L +  G
Sbjct: 221 AVVPNR-----PGIPERV-SKRVLPDLDEAYFPTRPIVPFLEVVHDR-----IMLEVMRG 269

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEK 244
           C   C FC           R L+ ++ +A +L+ + G  EI+L   +   +         
Sbjct: 270 CTHGCRFCQAGAIYRPVRERDLAVLLRQAEELVRHTGHEEISLTSLSTADY--------- 320

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRD--MSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
               +L  +L    G + +  +    R    S  L  A   +      L    ++GS R+
Sbjct: 321 SRVEELARALVAAYGDLGVSVSLPSLRVDAFSVRLADAVQQVRK--SSLTFAPEAGSQRL 378

Query: 303 LKSMNRRHTAYEYRQI-IDRIRSVRPDIAISSDFIVGFPGETDDDFR 348
              +N+  T  +      +  R+    I +   F++G P E ++D +
Sbjct: 379 RDVINKGVTEDDILTATAEAFRAGWQAIKLY--FMLGLPTEGEEDLQ 423


>gi|114320740|ref|YP_742423.1| lipoyl synthase [Alkalilimnicola ehrlichii MLHE-1]
 gi|122311606|sp|Q0A8A4|LIPA_ALHEH RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|114227134|gb|ABI56933.1| lipoic acid synthetase [Alkalilimnicola ehrlichii MLHE-1]
          Length = 331

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/182 (13%), Positives = 65/182 (35%), Gaps = 9/182 (4%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V             +    A  +   G+  + L   +    R    DG   
Sbjct: 98  CTRACRFCAVDTGNPKGR-LDHDEPAHAADSVRLMGLSYVVLTSVD----RDDLEDGGAG 152

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
            ++  + ++ E+     +   T     + + + +       +       V+  +  + + 
Sbjct: 153 HYAACVNAIREVNPETAVEVLTPDFNGVPEHVHRVVDARPEVFAQNVETVRRLTHPV-RD 211

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
               +   +  +++   ++ RPD+   +  ++G  GE D++ R T++ +  +G       
Sbjct: 212 PRAGY--EQTLEVLRLAKARRPDMLTKTSLMLGL-GERDEEIRETLEDLRAVGVDIVTFG 268

Query: 366 KY 367
           +Y
Sbjct: 269 QY 270


>gi|269137886|ref|YP_003294586.1| putative Fe-S oxidoreductase [Edwardsiella tarda EIB202]
 gi|267983546|gb|ACY83375.1| putative Fe-S oxidoreductase [Edwardsiella tarda EIB202]
 gi|304557939|gb|ADM40603.1| Predicted Fe-S oxidoreductase [Edwardsiella tarda FL6-60]
          Length = 316

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 35/176 (19%), Positives = 68/176 (38%), Gaps = 12/176 (6%)

Query: 188 KFCTFCVV-PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT 246
             CTFC V  +       RS+++ ++   + ++     +                 E C 
Sbjct: 58  GGCTFCNVASFADEQMQRRSIAEQLEAQARKVNRARRYLAYF------QAYTSTYAEVCI 111

Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV--LMPYLHLPVQSGSDRILK 304
             D+     +   +V L    + P  + + ++    +        +L L +QS +D+ L+
Sbjct: 112 LRDMYREALQQADMVGL-CVGTRPDCVPESVLDLLAEYREQGYEVWLELGLQSANDKTLR 170

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
            +NR H    Y++     R+    + + S  IVG PGE+  D   T+  V + G  
Sbjct: 171 RINRGHDFACYQRTTRAARAR--GLKVCSHLIVGLPGESHADCLDTLQRVVETGVE 224


>gi|320352216|ref|YP_004193555.1| Radical SAM domain-containing protein [Desulfobulbus propionicus
           DSM 2032]
 gi|320120718|gb|ADW16264.1| Radical SAM domain protein [Desulfobulbus propionicus DSM 2032]
          Length = 335

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 39/197 (19%), Positives = 64/197 (32%), Gaps = 14/197 (7%)

Query: 176 VTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ--VVDEARKLIDNGVCEITLLGQNVN 233
           V       EGC   C FC      G +++  +    V +  R  +     +     Q   
Sbjct: 4   VIPIFIPHEGCPHRCIFCDQRRISG-QVAPPVDSNGVAETIRVWLARSRPDRRERVQ--V 60

Query: 234 AWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY--- 290
           A  G    G           L+ ++   R              LI + G LD+L  Y   
Sbjct: 61  ALYGGSFTGLPV--ERQRELLAAVQPFRRHGLVQEIRLSTRPDLIDS-GRLDLLEEYGVS 117

Query: 291 -LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
            + L  QS  DR+L+   R H          ++R       +    ++G PG++    R 
Sbjct: 118 IVELGAQSCDDRVLRLAGRGHGGAAVEDAARQLRER--GFGLGIQLMLGLPGDSFRILRQ 175

Query: 350 TMDLVDKIGYAQAFSFK 366
           T+  V  +  A    + 
Sbjct: 176 TVATVVSLRPAFVRLYP 192


>gi|294791673|ref|ZP_06756821.1| radical SAM domain protein [Veillonella sp. 6_1_27]
 gi|294456903|gb|EFG25265.1| radical SAM domain protein [Veillonella sp. 6_1_27]
          Length = 391

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 42/209 (20%), Positives = 71/209 (33%), Gaps = 19/209 (9%)

Query: 177 TAFLTIQEGCDKFCTFCVVPYTRGIE-ISR-SLSQVVDEARKLI----DNGVCEITLLGQ 230
             F     GC   CTFC      G   IS  +   +    +  +    +    E+   G 
Sbjct: 2   IPFFIPHVGCPYVCTFCNQSRITGQSGISHLTPEYIQQTIKDYVGTKRNEKFWEVAFYGG 61

Query: 231 NVNAWRGKGLDGEKCTFSDLLYSLSE--IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLM 288
           +  A      D +          L +  I G+ R         D +  L++++G     +
Sbjct: 62  SFTAI---TKDLQHKLLMPAYEMLQQGLIDGI-RCSTRPDAVGDEAITLLQSYG-----V 112

Query: 289 PYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFR 348
             + L VQS +D IL    R HTA E  + + R++    D+ +    + G  GET     
Sbjct: 113 KTVELGVQSMNDGILVDAKRGHTAQEVVEAVTRLKHR--DMTVGVQLLPGLKGETWQTII 170

Query: 349 ATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
            T   V  +       +       T  ++
Sbjct: 171 ETAIAVAALRPDFVRIYPVLVIENTELAD 199


>gi|294793531|ref|ZP_06758668.1| radical SAM domain protein [Veillonella sp. 3_1_44]
 gi|294455101|gb|EFG23473.1| radical SAM domain protein [Veillonella sp. 3_1_44]
          Length = 394

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 42/209 (20%), Positives = 70/209 (33%), Gaps = 19/209 (9%)

Query: 177 TAFLTIQEGCDKFCTFCVVPYTRGIE-ISR-SLSQVVDEARKLI----DNGVCEITLLGQ 230
             F     GC   CTFC      G   IS  +   +    +  +    +    E+   G 
Sbjct: 2   IPFFIPHVGCPYVCTFCNQSRITGQSGISHLTPEYIQQTIKDYVGTKRNEKFWEVAFYGG 61

Query: 231 NVNAWRGKGLDGEKCTFSDLLYSLSE--IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLM 288
           +  A      D +          L +  I G+ R         D +  L++++G     +
Sbjct: 62  SFTAII---KDLQHKLLMPAYEMLQQGLIDGI-RCSTRPDAVGDEAITLLQSYG-----V 112

Query: 289 PYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFR 348
             + L VQS +D IL    R HTA E  + + R++    D+ +    + G  GET     
Sbjct: 113 KTVELGVQSMNDGILVDAKRGHTAQEVVEAVTRLKHR--DMTVGVQLLPGLKGETWQTII 170

Query: 349 ATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
            T   V  +       +       T  + 
Sbjct: 171 ETAIAVAALRPDFVRIYPVLVIENTELAE 199


>gi|262368632|ref|ZP_06061961.1| lipoyl synthase [Acinetobacter johnsonii SH046]
 gi|262316310|gb|EEY97348.1| lipoyl synthase [Acinetobacter johnsonii SH046]
          Length = 337

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 34/216 (15%), Positives = 68/216 (31%), Gaps = 12/216 (5%)

Query: 153 DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVD 212
           +  +    E  +  +       G   F+ + + C + C FC V    G   +    +   
Sbjct: 58  EQKLHTVCEEAACPNLPECFGGGTATFMIMGDICTRRCPFCDV--AHGRPNALDADEPRH 115

Query: 213 EARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
            A  + + G+    +   +    R   LDG    F D +     +     L       R 
Sbjct: 116 MAETISNLGLKYAVITSVD----RDDLLDGGAQHFVDCIKEARVLSPNTLLEILVPDFRG 171

Query: 273 MSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL-KSMNRRHTAYEYRQIIDRIRSVRPDIAI 331
             D  ++   +     P         +   L K+M           ++   +   PD+  
Sbjct: 172 RMDIALRIMTE----CPPDVFNHNIETVPRLYKAMRPGSDYQHSLNLLKMFKEYCPDVPT 227

Query: 332 SSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
               +VG  GET+++  + +D +   G       +Y
Sbjct: 228 KCGLMVGI-GETEEEVISLLDDLHAHGVDYVTIGQY 262


>gi|126640282|ref|YP_001083266.1| hypothetical protein A1S_0183 [Acinetobacter baumannii ATCC 17978]
          Length = 760

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 47/264 (17%), Positives = 85/264 (32%), Gaps = 35/264 (13%)

Query: 151 DTDYSVEDKFERLSIV---DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRS 206
           + DY  +  + RL      D  +     +   + I  GC   CTFC +    G  I +RS
Sbjct: 354 EMDYVFDLPYARLPHPAYGDARFPAFDMIKFSVNIMRGCFGGCTFCSITEHEGRIIQNRS 413

Query: 207 LSQVVDEARKLIDNGVCEITLLGQ------NVNAWRGKGLDGEK---------------- 244
              ++ E  K+ D       ++        N+     K  + EK                
Sbjct: 414 EDSILREIEKIRDTAPNFTGIISDLGGPTANMYRLHCKDPEIEKNCRKPSCVYPGVCQNL 473

Query: 245 ----CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL--DVLMPYLHLPVQSG 298
                    L      IKG+ ++   +    D++    +   +L    +  YL +  +  
Sbjct: 474 HTDHAPLVQLYRKARAIKGVKKILIGSGLRYDLAVLNPEYVKELVQHHVGGYLKIAPEHT 533

Query: 299 SDRILKSMNRR--HTAYEYRQIIDRI-RSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
               L  M +    T   ++Q+ DR  +    +  +   FI   PG +D D       + 
Sbjct: 534 EQGPLSKMMKPGIGTYDRFKQMFDRFSKEAGKEQYLIPYFIAAHPGTSDYDMMHLAIWLK 593

Query: 356 KIGYAQAFSFKYSPRLGTPGSNML 379
           K G+       + P      + M 
Sbjct: 594 KNGFRADQVQTFYPSPMATATTMY 617


>gi|150391795|ref|YP_001321844.1| radical SAM domain-containing protein [Alkaliphilus metalliredigens
           QYMF]
 gi|149951657|gb|ABR50185.1| Radical SAM domain protein [Alkaliphilus metalliredigens QYMF]
          Length = 436

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/202 (13%), Positives = 65/202 (32%), Gaps = 17/202 (8%)

Query: 180 LTIQEGCDKFCTFCVVPYTRG-IEISR-SLSQVVDEARKLIDNGVCEITLLGQNVNAWRG 237
           +     C K C +C +          R +  ++++   +L   G+  + L         G
Sbjct: 152 IEFSNYCKKECNYCGIRKGCTTPSRYRMTEDEIMESVYQLHQWGIKTVILQS-------G 204

Query: 238 KGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQS 297
           +           ++  +     +           D    L +A  +         L +++
Sbjct: 205 EDDYYTTDMLIQIITRIKRETKMGVTLSIGEKSYDEYQFLREAGTNN------FLLKIET 258

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
            + +I + ++         Q  + +R +    A  S  ++G PG+T++D    +    K+
Sbjct: 259 TNRQIFEFIHPDDNYDTRIQCSEWLREL--GYANGSGNMIGLPGQTEEDIAEDILFFKKM 316

Query: 358 GYAQAFSFKYSPRLGTPGSNML 379
                    + P  GTP     
Sbjct: 317 RIHMIGIGPFIPAKGTPFETYE 338


>gi|332799047|ref|YP_004460546.1| oxygen-independent coproporphyrinogen III oxidase
           [Tepidanaerobacter sp. Re1]
 gi|332696782|gb|AEE91239.1| oxygen-independent coproporphyrinogen III oxidase
           [Tepidanaerobacter sp. Re1]
          Length = 375

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 42/217 (19%), Positives = 78/217 (35%), Gaps = 13/217 (5%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C K C +C       +E+   + + +   +K I +         Q +    G        
Sbjct: 13  CIKKCHYCDFNSFTTLEL---IPEYLAALKKEILSLQKC-EYTAQTIFIGGGTPTILRCE 68

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
             +D+L +L E   + +    T      +    K      + +  L + +Q+  +++LK 
Sbjct: 69  QLADILRTLHESVYIAKDAEITIEANPGTLTREKLISLKSLGVNRLSIGLQAYQNQLLKI 128

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           M R HT  ++ +  +  R+V  D  I+ D I G P +  +DF  T+  V  I       +
Sbjct: 129 MGRIHTVEDFEKNFETARNVGFD-NINIDLIFGLPNQKVEDFDETLKKVLHIFPEHISCY 187

Query: 366 KYSPRLGTPGSN--------MLEQVDENVKAERLLCL 394
             S    T            +  + DE     R + L
Sbjct: 188 SLSVEEHTEFYRRQQEGTLLLPSEDDEREMYYRAIEL 224


>gi|188588732|ref|YP_001922207.1| hypothetical protein CLH_2830 [Clostridium botulinum E3 str. Alaska
           E43]
 gi|188499013|gb|ACD52149.1| radical SAM domain protein protein [Clostridium botulinum E3 str.
           Alaska E43]
          Length = 682

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 54/341 (15%), Positives = 110/341 (32%), Gaps = 53/341 (15%)

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           E     +  +  +      +  +   DGG    + V   +T   GC   C+FC + + +G
Sbjct: 265 ENLTQEEMDITYNLPYTRTYHPIYEADGGIPAIQEVKFSITSHRGCFGSCSFCALTFHQG 324

Query: 201 IEI-SRSLSQVVDEA-------------------------RKLIDNGVCEITLLGQNVNA 234
             I +RS + ++DEA                         R      V       Q +  
Sbjct: 325 RVIQNRSQNSIIDEAKLLTTLPDFKGYIHDIGGPTADFRHRACKKQEVHGTCKTKQCMFP 384

Query: 235 WRGKGLDGEKCTFSDLLYSLSEIKGL----VRLRYTTSHPRDMSDCLIKAHGDLDVLMPY 290
              K L  +   +  LL  + ++ G+    +R      +     +           +   
Sbjct: 385 SPCKNLKIDHTEYLSLLKKVRKLPGIKKVFIRSGIRYDYLIHDKNDSFFKELCEHHISGQ 444

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA----ISSDFIVGFPGETDDD 346
           L +  +    ++L  M +  T   Y + +D+  ++   +     +    +   PG   + 
Sbjct: 445 LKVAPEHVVPKVLNQMGKP-TREVYDRFVDKYFNINKKLNKKQFLVPYLMSSHPGSDLNA 503

Query: 347 FRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML--------------EQVDENVKAERLL 392
                  V ++GY       + P  G+  + M                +  E  + +R L
Sbjct: 504 AIELAQYVKEMGYTPEQVQDFYPTPGSLSTTMYYTGFNPLTGEEVYIPKTPEEKEMQRAL 563

Query: 393 CLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSP 433
            +Q  + +       A +    E LI  +GK+   L+G +P
Sbjct: 564 -IQFAIPKNHKKVKKALIAAHREDLI-GNGKD--CLIGFTP 600


>gi|168188028|ref|ZP_02622663.1| oxygen-independent coproporphyrinogen III oxidase [Clostridium
           botulinum C str. Eklund]
 gi|169294131|gb|EDS76264.1| oxygen-independent coproporphyrinogen III oxidase [Clostridium
           botulinum C str. Eklund]
          Length = 363

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 36/218 (16%), Positives = 76/218 (34%), Gaps = 18/218 (8%)

Query: 169 GYNRKRGVTAFLTIQEGCDKFCTFC-------VVPYTRGIEISRSLSQVVDEARKLIDNG 221
             + +  +       EGC   C FC             G  +  ++ + +   ++  +N 
Sbjct: 1   MKSSRHYIIPIFVPHEGCPHDCVFCNQNTITGTSNKVNGKFVEETIEEYLKTIKR--ENS 58

Query: 222 VCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAH 281
           + E++  G    A     +D EK      +    +  G +   + ++ P  + D +++  
Sbjct: 59  IVEVSFFGGTFTA-----IDVEKQNELLTVAKKYKDMGKIDYIHLSTRPDYIDDFILENL 113

Query: 282 GDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPG 341
                 +  + L VQS  D +L    R HT  +  +    I+    +  +    ++G PG
Sbjct: 114 KKYSADV--IELGVQSLDDEVLIQSGRGHTVEDVIKASKLIKKY--NFVLGLQIMLGLPG 169

Query: 342 ETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
           +T      T   + ++    A  +       TP   M 
Sbjct: 170 DTFKKDIETTKKIIQLKPDIARIYPTLVVKDTPMEKMY 207


>gi|8571396|gb|AAF76866.1|AF232919_5 MiaB-like protein [Sinorhizobium meliloti]
          Length = 51

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/36 (52%), Positives = 23/36 (63%)

Query: 19 DQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYE 54
          D  +  ++ FVK+YGCQMNVYDS RM D     GY 
Sbjct: 16 DLNVPARKVFVKTYGCQMNVYDSDRMSDALSRDGYV 51


>gi|34764314|ref|ZP_00145148.1| Coproporphyrinogen oxidase, anaerobic [Fusobacterium nucleatum
           subsp. vincentii ATCC 49256]
 gi|27885914|gb|EAA23256.1| Coproporphyrinogen oxidase, anaerobic [Fusobacterium nucleatum
           subsp. vincentii ATCC 49256]
          Length = 320

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 35/213 (16%), Positives = 68/213 (31%), Gaps = 14/213 (6%)

Query: 174 RGVTAFLTIQE-GCDKFCTFCVVPYTRGIEISRSLSQVVDEA----RKLIDNGVCEITLL 228
           +     + I   GC   C FC      G E   SL  + +      + L  N + ++   
Sbjct: 2   KHYNIPVFISHFGCPNACVFCNQKKINGRETDVSLDDLKNIIDSYLKTLPKNSIKQVAFF 61

Query: 229 GQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLM 288
           G       G  +D +K     +   +           T     D    ++         +
Sbjct: 62  GGTFT---GISMDLQKEYLEVVKKYIDNNDVEGVRISTRPECIDD--EILTQLKKYG--V 114

Query: 289 PYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFR 348
             + L +QS  D++LK+  R +T    ++  D I+S      +    ++G P        
Sbjct: 115 KTIELGIQSLDDKVLKATGRNYTYDIVKKSCDLIKSY--GFELGVQLMIGLPKSDYKSDL 172

Query: 349 ATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
            +     ++    A  +      GT    M ++
Sbjct: 173 QSAIKSLELNPDIARIYPTLVIKGTELEFMYKK 205


>gi|118576758|ref|YP_876501.1| Fe-S oxidoreductase [Cenarchaeum symbiosum A]
 gi|118195279|gb|ABK78197.1| Fe-S oxidoreductase [Cenarchaeum symbiosum A]
          Length = 511

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 46/300 (15%), Positives = 103/300 (34%), Gaps = 30/300 (10%)

Query: 78  EKVYSFLGRIRNLKNS--RIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135
           EK+     + + L     ++K+  D  VV+ G  A    +    +   ++ VV  +    
Sbjct: 105 EKLSYVAMKFKRLCARLIQLKKKYDFKVVIGGNGAWELAKPDRMKIHGIDTVVIGEADEL 164

Query: 136 LPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
             +L      G    +  +      + + ++D        V + +    GC + C FC V
Sbjct: 165 AMDLFTDLEKGD-APELMHCFVKNIQNIPVIDEPT-----VNSLIEAMRGCGRGCDFCDV 218

Query: 196 PYTRGIEISR---SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD--GEKCTFSDL 250
                 + S+      ++  EA+  +D G   I L    +  +     D    +   +DL
Sbjct: 219 -----NKRSKKDLPPDRLQKEAKVNLDYGFDSIWLHSDEMLLYGCDNRDFIPNRDAITDL 273

Query: 251 LYSLSEIKGLV-RLRYTTSHPRDMSDCLIKAHGDLDVLMP-----YLHLPVQSGSDRILK 304
              L  +        + T         L+     ++           +L +++ +  ++K
Sbjct: 274 WKGLKGLGANFIGTTHMTFSAVAADPELMHNIATINRQHENNRWLSTNLGIETVAPDLVK 333

Query: 305 SMNRRHTA----YEYRQIIDRIRSVRP--DIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
                 T      E+  ++ +   +        ++  I+G+P E+  D + T+D+V    
Sbjct: 334 KHLGVKTRPFAPEEWGSVVRKGAEIMNENHWFPAATIIIGWPDESPADVQYTLDMVTDFR 393


>gi|311281670|ref|YP_003943901.1| oxygen-independent coproporphyrinogen III oxidase [Enterobacter
           cloacae SCF1]
 gi|308750865|gb|ADO50617.1| oxygen-independent coproporphyrinogen III oxidase [Enterobacter
           cloacae SCF1]
          Length = 457

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 39/238 (16%), Positives = 78/238 (32%), Gaps = 25/238 (10%)

Query: 186 CDKFCTFC-----VVPYTRGIEISRSL--SQVVDEARKLIDNGVCEITLLGQNVNAWRGK 238
           C K C FC     V       +    +   +++  A       V ++   G       G 
Sbjct: 62  CHKLCYFCGCNKIVTRQQHKADRYLDVLEQEILHRAPLFNGRHVSQLHWGG-------GT 114

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVR---LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPV 295
                K   S L+  L E     R          PR++   ++            L + V
Sbjct: 115 PTYLNKAQISRLMRLLRE-NFHFRDDAEISIEVDPREIELDVLDCLRQEG--FNRLSMGV 171

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS-DFIVGFPGETDDDFRATMDLV 354
           Q  +  + + +NR         +++  R +      ++ D I G P +T + F  T+  V
Sbjct: 172 QDFNKEVQRLVNREQDEDFIFALLNHAREI--GFTSTNIDLIYGLPKQTPESFAFTLSRV 229

Query: 355 DKIGYAQAFSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVG 411
            ++   +   F Y+       +   ++  D     ++L  LQ+ +     +     +G
Sbjct: 230 AELNPDRLSVFNYAHLPTLFAAQRKIKDADLPSAQQKLDILQETIASLTHAGYQ-FIG 286


>gi|269140530|ref|YP_003297231.1| putative Fe-S oxidoreductase [Edwardsiella tarda EIB202]
 gi|267986191|gb|ACY86020.1| putative Fe-S oxidoreductase [Edwardsiella tarda EIB202]
 gi|304560315|gb|ADM42979.1| Fe-S oxidoreductase [Edwardsiella tarda FL6-60]
          Length = 754

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 60/321 (18%), Positives = 106/321 (33%), Gaps = 61/321 (19%)

Query: 159 KFERLSIVDGGYNRKRG---VTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEA 214
            F+R+     G  R      +   + I  GC   C FC +    G  I SRS   ++ E 
Sbjct: 351 PFQRVPHPAYGKARLPAYDMIRFSVNIMRGCYGGCAFCSITEHEGRIIQSRSEDSIIREI 410

Query: 215 RKLIDN--GVCEIT--LLGQNVNAWR----------------------GKGLDGEKCTFS 248
            ++ D   G   I   L G   N +                        + +D       
Sbjct: 411 EEIRDKVPGFTGIISDLGGPTANMYMLRCQSPRAEQTCRRASCVYPDICRHMDTNHEPTI 470

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSM 306
           +L     +++G+ ++   +    D++    +   +L    +  YL +  +   +  L  M
Sbjct: 471 NLYRRARDLQGVKKILIASGVRYDLAVQDPRYIKELATHHVGGYLKIAPEHTEEGPLSKM 530

Query: 307 NRRHTAYEYR--QIIDRI-RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY--AQ 361
            +      YR  ++ D   +    +  +   FI   PG  D+D       + +  +   Q
Sbjct: 531 MKPGMGSYYRFKELFDAYSKQAGKEQYLIPYFISAHPGTRDEDMVNLALWLKQHRFRLDQ 590

Query: 362 AFSFKYSPR-----LGTPGSNMLEQVD---ENV---KAERLLCLQKKLRE---------Q 401
             +F  SP      +   G N L +VD   E+V   K ER   L K L            
Sbjct: 591 VQNFYPSPLANSTTMYYTGKNPLAKVDYKSEDVVVPKGERQRRLHKALLRYHDPANWPMI 650

Query: 402 QVSF----NDACVGQIIEVLI 418
           + +         +G   E L+
Sbjct: 651 RAALEEMGLQHLIGNRRECLV 671


>gi|317491118|ref|ZP_07949554.1| lipoyl synthase [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316920665|gb|EFV41988.1| lipoyl synthase [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 321

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/182 (16%), Positives = 66/182 (36%), Gaps = 10/182 (5%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V    G  ++   ++    A+ + D G+  + +   +    R    DG   
Sbjct: 94  CTRRCPFCDV--AHGRPVAPDANEPEKLAQTIADMGLRYVVITSVD----RDDLRDGGAQ 147

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
            F+D + ++      +R+       R   +  +    +     P +         RI + 
Sbjct: 148 HFADCIRAIRAKNPTIRIETLVPDFRGRMERALDILTETP---PDVFNHNLENVPRIYRQ 204

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           +          ++++  ++  P+I   S  +VG  GET+++    M  +   G       
Sbjct: 205 VRPGADYNWSLKLLENFKAAHPEIPTKSGLMVGL-GETNEEIIEVMRDLRAHGVTMLTLG 263

Query: 366 KY 367
           +Y
Sbjct: 264 QY 265


>gi|168180665|ref|ZP_02615329.1| radical SAM domain protein [Clostridium botulinum NCTC 2916]
 gi|226949807|ref|YP_002804898.1| radical SAM domain-containing protein [Clostridium botulinum A2
           str. Kyoto]
 gi|182668541|gb|EDT80520.1| radical SAM domain protein [Clostridium botulinum NCTC 2916]
 gi|226842528|gb|ACO85194.1| radical SAM domain protein [Clostridium botulinum A2 str. Kyoto]
 gi|322806719|emb|CBZ04288.1| oxygen-independent coproporphyrinogen III oxidase [Clostridium
           botulinum H04402 065]
          Length = 363

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 39/210 (18%), Positives = 74/210 (35%), Gaps = 11/210 (5%)

Query: 176 VTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEI-TLLGQNVNA 234
           +      QEGC   C FC      G E    + +  +  R+ I+  +  I         +
Sbjct: 7   IIPIFVAQEGCPHNCVFCNQHKITG-EKDEMIDE--NYVRETIEAYIKTIDRENSTLEVS 63

Query: 235 WRGKGLDGEKCTFSDLLYSLSEI---KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL 291
           + G    G        L  +++    KG +   + ++ P  +   ++    +       +
Sbjct: 64  FFGGTFTGIPIERQKSLLKVAKEYKDKGQIDYIHMSTRPDYIDREILDNLKEYS--ADII 121

Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351
            L VQS  D +L    R H+  E  +    IR       +    ++G PG+T      T+
Sbjct: 122 ELGVQSLDDEVLLKSGRGHSVEEVHRASKLIREY--GFTLGHQIMLGLPGDTFKKDIETV 179

Query: 352 DLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
               ++    A  +       TP  +ML++
Sbjct: 180 AKSLEMEPDIARIYPALVIKDTPMEDMLKK 209


>gi|154500485|ref|ZP_02038523.1| hypothetical protein BACCAP_04157 [Bacteroides capillosus ATCC
           29799]
 gi|150270716|gb|EDM98012.1| hypothetical protein BACCAP_04157 [Bacteroides capillosus ATCC
           29799]
          Length = 674

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 55/301 (18%), Positives = 96/301 (31%), Gaps = 45/301 (14%)

Query: 114 GEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRK 173
           G  IL+R     +VV P       E L+        +  +     +   +    GG    
Sbjct: 248 GRAILQRHGRDLLVVNPPAMPLTTEELD--------LVAELPYVREPHPMYDSMGGVPAI 299

Query: 174 RGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDN-GVCEIT--LLG 229
             V   +    GC   C FC + + +G  I SRS   V+ E   L  + G       + G
Sbjct: 300 EEVRFSVVHNRGCFGACNFCSLAFHQGRIISSRSHESVIREVTALTKHPGFKGYIHDVGG 359

Query: 230 QNVNAWR----------------------GKGLDGEKCTFSDLLYSLSEIKGLVR----- 262
              N  R                         LD +   +  LL  L EI G+ +     
Sbjct: 360 PTANFRRPACKKQMKAGLCKNRACLSPEACPNLDADHTDYLMLLRKLREIPGIKKIFIRS 419

Query: 263 -LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH--TAYEYRQII 319
            +R+         +           +   L +  +   + +L  M + H     ++RQ  
Sbjct: 420 GIRFDYMMKDKSGEFFADLVKHH--VSGQLKVAPEHCVNSVLDYMGKPHIEVYEKFRQKY 477

Query: 320 DRI-RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           +R+ +    +  +    +   PG T +D     + ++K G        + P  GT  + M
Sbjct: 478 ERLNQKYSKEQYLVPYLMSSHPGCTLEDAVKLAEWLNKSGRQPEQVQDFYPTPGTLSTCM 537

Query: 379 L 379
            
Sbjct: 538 Y 538


>gi|78221639|ref|YP_383386.1| radical SAM family protein [Geobacter metallireducens GS-15]
 gi|78192894|gb|ABB30661.1| Radical SAM [Geobacter metallireducens GS-15]
          Length = 557

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 42/180 (23%), Positives = 67/180 (37%), Gaps = 17/180 (9%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
           + +  GC + C FC   +       RSL  V     + +     +I L+G  V+ +R  G
Sbjct: 250 VEVSRGCGRGCRFCAAGFIYHPYRQRSLDAVKAAVAEGLS-HRRKIGLVGAAVSDFREIG 308

Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
                    +L   +    G V +        D    +I+           + L  + GS
Sbjct: 309 ---------ELCRHILAEGGTVSVSSLRIDRLDEG--MIEVLKASGH--KTVALAPEGGS 355

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDI-AISSDFIVGFPGETDDDFRATMDLVDKIG 358
            RI   +N+  T  +     D +  +  DI  +   FI+G P ET DD      LV+KI 
Sbjct: 356 QRIRDLINKNLTEEQILAACDLL--IGHDILNLKLYFIIGLPTETMDDLEEMALLVEKIR 413


>gi|329765766|ref|ZP_08257335.1| radical SAM domain-containing protein [Candidatus Nitrosoarchaeum
           limnia SFB1]
 gi|329137832|gb|EGG42099.1| radical SAM domain-containing protein [Candidatus Nitrosoarchaeum
           limnia SFB1]
          Length = 511

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 51/307 (16%), Positives = 109/307 (35%), Gaps = 44/307 (14%)

Query: 78  EKVYSFLGRIRNLKNSRI--KEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135
           EK+     + + +  + I  K+  D  VVV G  A    +    +   ++ VV  +    
Sbjct: 105 EKLSYVAMKFKKMCANIIQLKKKYDFHVVVGGNGAWELAKSDRMQIHGIDTVVVGEADEL 164

Query: 136 LPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
             +L      G    +  +      + + I++G       + + +    GC + C FC V
Sbjct: 165 ALDLFHDLEKGD-APELMHCFVKNIQNIPIIEGPT-----INSLIEAMRGCGRGCDFCDV 218

Query: 196 PYTRGIEISR---SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLY 252
                 + S+    L ++  EA+  +D G   I L    +  +     D     F     
Sbjct: 219 -----NKRSKKDLPLERLQHEAKINLDYGFDSIWLHSDEMLLYGCDNRD-----FIPNRD 268

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL---------------HLPVQS 297
           +++E+     L+   ++    +     A      LM  +               +L +++
Sbjct: 269 AITEL--WKGLKSLGANFIGTTHMTFSAVAADPELMRQISSINKQDETGRWLATNLGIET 326

Query: 298 GSDRILKSMNRRHTA----YEYRQIIDRIRSVRPD--IAISSDFIVGFPGETDDDFRATM 351
            +  ++K      T      E+  ++     +  D     ++  I+G+P ET DD + T+
Sbjct: 327 VAPNMVKKHLGVKTRPFAPEEWGSVVREGAKILNDNHWFPAATIIIGWPDETPDDVQYTI 386

Query: 352 DLVDKIG 358
           D++    
Sbjct: 387 DMMSDFR 393


>gi|260767238|ref|ZP_05876179.1| lipoate synthase [Vibrio furnissii CIP 102972]
 gi|260617746|gb|EEX42924.1| lipoate synthase [Vibrio furnissii CIP 102972]
 gi|315180864|gb|ADT87778.1| Lipoyl synthase (Lipoic acid synthase) (Lipoate synthase) (Sulfur
           insertion protein lipA) (Lip-syn) (LS) [Vibrio furnissii
           NCTC 11218]
          Length = 321

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/182 (14%), Positives = 62/182 (34%), Gaps = 10/182 (5%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V    G  ++    +    A+ + D  +  + +   +    R    DG   
Sbjct: 94  CTRRCPFCDV--AHGRPLTPDAQEPQKLAQTIKDMKLKYVVITSVD----RDDLRDGGAQ 147

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
            F+D    +  +   +R+       R   D  +    D     P +       + R+ + 
Sbjct: 148 HFADCNREIRALNPEIRIETLVPDFRGRMDVALDLLKDNP---PDVFNHNLETAPRLYRK 204

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
                      +++ + + + P++   S  ++G  GET ++    +  +   G       
Sbjct: 205 ARPGANYKWSLELLQKFKEMHPNVPTKSGLMMGL-GETKEEIVEVLKDLRAHGVTMLTLG 263

Query: 366 KY 367
           +Y
Sbjct: 264 QY 265


>gi|116872907|ref|YP_849688.1| coproporphyrinogen III oxidase [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|116741785|emb|CAK20909.1| oxygen-independent coproporphyrinogen III oxidase, putative
           [Listeria welshimeri serovar 6b str. SLCC5334]
          Length = 385

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/200 (18%), Positives = 73/200 (36%), Gaps = 10/200 (5%)

Query: 186 CDKFCTFCVV--PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
           C+  C +C     +  G  +   +  ++ E       G          V    G      
Sbjct: 21  CEHICYYCDFNKVFLEGQPVDEYVDLLIKEMELTAAKGPIAPV---DTVFVGGGTPTTLN 77

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
           +   + L  ++ +I  L +    +         L K     D  +  + + VQS ++ +L
Sbjct: 78  EAQIARLCTAIQDILPLKKDIEFSFEANPGDLSLSKVQTMQDHGVNRISMGVQSFNNELL 137

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           K + R HT  +  Q ++ +R +  +  +S D I   PG+ + DF+ T+     I      
Sbjct: 138 KKIGRIHTVKDVYQSVENMRKIGFE-NVSIDLIFSLPGQKEADFKDTLK--QAIDLDLPH 194

Query: 364 SFKYS--PRLGTPGSNMLEQ 381
              YS      T   N++++
Sbjct: 195 YSAYSLIIEPKTIFYNLMQK 214


>gi|322382952|ref|ZP_08056784.1| coproporphyrinogen III oxidase-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
 gi|321153072|gb|EFX45530.1| coproporphyrinogen III oxidase-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
          Length = 510

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 61/382 (15%), Positives = 122/382 (31%), Gaps = 38/382 (9%)

Query: 53  YERVNSMDDADL--IVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVA 110
           Y  V  +  AD   I +  C +   +  K++     +R    +           +   + 
Sbjct: 43  YVSVELLVSADRGDIAVKAC-LTHLSENKIWCQ-EAVRRHNETWEDPRRIERRAILSALL 100

Query: 111 QAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV-----------VDTDYSVEDK 159
           Q   E      P   ++ G +       LL +    K                D  ++  
Sbjct: 101 QVFQEATGLEQPW-GILTGVRPTKLAHNLLMKEGKEKTRQFLKEHYLVTRPKADLLMDIA 159

Query: 160 FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP----YTRGIEISRSLSQVVDEAR 215
             +L ++   ++    V+ ++ I   C   C +C  P          +   L  + +E R
Sbjct: 160 ERQLKVIPDLFHLDHEVSLYIGIPF-CPTKCAYCTFPAYDIQGNNGSVHAFLEGLHEEIR 218

Query: 216 ------KLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSH 269
                 K    G+  I   G    +   + +D     F  +   L ++  +  L      
Sbjct: 219 LTGEWLKRHGMGITTIYWGGGTPTSLEAEDMD---ALFRTMQKHLPQMDKVRELTVEAGR 275

Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329
           P  ++   ++     D  +  + +  QS +   L ++ R HT  E        R +  + 
Sbjct: 276 PDTITPDKLEVMKRWD--VDRISINPQSFTQLTLDTIGRHHTVKETVDKFKLSRQLGMN- 332

Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE-NVKA 388
            I+ D I+G PGE   +   T++   K+          S       S M +Q D+  V  
Sbjct: 333 NINMDLIIGLPGEGVAELEGTLEETAKLLPESLTVHTLS---FKRASKMTKQRDQYEVVG 389

Query: 389 ERLLCLQKKLREQQVSFNDACV 410
            R + +    +  + +     V
Sbjct: 390 RREIAVM-MQKAVEWTKQHQYV 410


>gi|308068085|ref|YP_003869690.1| Fe-S oxidoreductase [Paenibacillus polymyxa E681]
 gi|305857364|gb|ADM69152.1| Fe-S oxidoreductase [Paenibacillus polymyxa E681]
          Length = 622

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 49/308 (15%), Positives = 97/308 (31%), Gaps = 29/308 (9%)

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER- 142
           +     + +   K   ++ +V+ G     + +  ++R   V+ +V  +      +LL+  
Sbjct: 67  IEETIKVIDVLKKIMPEVKIVLGGPEVSYDTDHWMKRLANVDFIVVGEGEETFHQLLQEL 126

Query: 143 -------------ARFGKRVVDTDYSVEDKFERLSIVDGG---YNRKRGVTAFLTIQEGC 186
                         R G+ V+      +     L                  +     GC
Sbjct: 127 EGDRKFHFVYGLAYRKGEEVIQMPGRPKADLNELPSPYRFAEDIPELGKRVVYFETSRGC 186

Query: 187 DKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT 246
              C FC+     G      + +   +   LIDNG   I  + +  N  R   L+  K  
Sbjct: 187 PFSCQFCLSSIEVG-VRYYDIERTKSDILYLIDNGANLIKFVDRTFNIKRDYALEMFKFL 245

Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL-DVLMPYLHLPVQSGSDRILKS 305
             +    + + +              M   ++    +     +    + VQS +D   + 
Sbjct: 246 IENHRGCVFQFE---------ITADIMRPEVLDYLAENAPPGVFRFEIGVQSTNDPTNEL 296

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           + RR    +  + + +++     I    D I G P E  D FR T + V  +G  +    
Sbjct: 297 VKRRQNFTKLSRTVTKVKQS-GKIDQHLDLIAGLPLEDYDTFRKTFNDVFALGPEELQLG 355

Query: 366 KYSPRLGT 373
                 GT
Sbjct: 356 FLKMLRGT 363


>gi|258621962|ref|ZP_05716991.1| Lipoate synthase [Vibrio mimicus VM573]
 gi|258585715|gb|EEW10435.1| Lipoate synthase [Vibrio mimicus VM573]
          Length = 321

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/182 (14%), Positives = 63/182 (34%), Gaps = 10/182 (5%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V    G   +    +    A+ + D  +  + +   +    R    DG   
Sbjct: 94  CTRRCPFCDV--AHGRPNAPEAEEPKKLAQTIHDMKLKYVVITSVD----RDDLRDGGAQ 147

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
            F+D    +  +   +R+       R   +  ++A  D     P +       + R+ + 
Sbjct: 148 HFADCNREIRALNPNIRIETLVPDFRGRMEVALEALKDNP---PDVFNHNLETAPRLYRK 204

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           +          +++ + +   P++   S  ++G  GET ++    +  +   G       
Sbjct: 205 VRPGANYKWSLELLRQFKEQHPNVPTKSGLMMGL-GETKEEIVEVLKDLRAHGVTMLTLG 263

Query: 366 KY 367
           +Y
Sbjct: 264 QY 265


>gi|227500636|ref|ZP_03930685.1| biotin synthase [Anaerococcus tetradius ATCC 35098]
 gi|227217223|gb|EEI82567.1| biotin synthase [Anaerococcus tetradius ATCC 35098]
          Length = 347

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 34/210 (16%), Positives = 68/210 (32%), Gaps = 20/210 (9%)

Query: 174 RGVTAFLTIQEGCDKFCTFCVVPYTRGI-EISR-SLSQVVDEARKLIDNGVCEITLLGQN 231
           RG+  F  I   C   C +C +  +    E  R S   ++  A+     G     L G  
Sbjct: 46  RGLIEFSNI---CKNDCYYCGIRKSNYHVERYRLSEEDIISCAKLGYKLGYRTFVLQG-- 100

Query: 232 VNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSD-CLIKAHGDLDVLMPY 290
                G+          D++  +  +   + +  +       S   L +A  D  +L   
Sbjct: 101 -----GEDGYFTDDIMVDIVKKIKALHDDIAITLSLGERSYESFKRLFEAGADRYLLREE 155

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
                 S  D   K      +    R  + +++ +     +   F+VG P +T +     
Sbjct: 156 T-----SDKDHYQKLHPSSMSFENRRDALRKLKEI--GFQVGGGFMVGSPYQTTESIIKD 208

Query: 351 MDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           +  ++++  A      Y  +  TP  +   
Sbjct: 209 LRFLEELQPAMIGIGPYMTQHDTPFKDFPN 238


>gi|159184259|ref|NP_353357.2| coproporphyrinogen III oxidase [Agrobacterium tumefaciens str. C58]
 gi|159139586|gb|AAK86142.2| oxygen-independent coproporphyrinogen III oxidase [Agrobacterium
           tumefaciens str. C58]
          Length = 399

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/226 (17%), Positives = 77/226 (34%), Gaps = 20/226 (8%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C   C +C           R + Q    A  L +      TL G  V      G  G   
Sbjct: 32  CAAKCPYC---DFNSHVRHRPVDQERFTAAFLREMEHMR-TLSGPRVVTSIFMG--GGTP 85

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY-------LHLPVQSG 298
           +  D     + + G+ R  +      +++     +  + +    Y       + L VQ+ 
Sbjct: 86  SLMDPQTVGALLDGISRF-WHVPDGIEITMEANPSSVEAERFRGYRAAGVNRVSLGVQAL 144

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           +DR LK + R H   +  + I   R + P ++   D I   P +T  ++ A +       
Sbjct: 145 NDRDLKFLGRLHDVADALKAIRLAREIFPRMSF--DLIYARPNQTVAEWDAELKEAVSYA 202

Query: 359 YAQAFSFKYSPRLGTPGSNMLEQ----VDENVKAERLLCLQKKLRE 400
                 ++ +   GTP   + +     V +   +  L    +++ E
Sbjct: 203 VDHLSLYQLTIEEGTPFYGLHKAGKLIVPDGEHSAVLYEATQEITE 248


>gi|269965480|ref|ZP_06179599.1| Lipoate synthase [Vibrio alginolyticus 40B]
 gi|269829959|gb|EEZ84189.1| Lipoate synthase [Vibrio alginolyticus 40B]
          Length = 321

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/182 (14%), Positives = 60/182 (32%), Gaps = 10/182 (5%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V    G  +     +    A+ + D  +  + +   +    R    DG   
Sbjct: 94  CTRRCPFCDV--AHGRPLPPEAEEPQKLAKTIADMKLKYVVITSVD----RDDLRDGGAQ 147

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
            F+D    +  +   +++       R   D  +    D     P +       + R+ + 
Sbjct: 148 HFADCNREIRALNPHIKIETLVPDFRGRMDVALDLMKDNP---PDVFNHNLETAPRLYRK 204

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
                      +++ + +   P++   S  ++G  GET ++    +  +   G       
Sbjct: 205 ARPGANYKWSLELLKKFKEQHPNVPTKSGLMMGL-GETKEEIIEVLKDLRAHGVTMLTLG 263

Query: 366 KY 367
           +Y
Sbjct: 264 QY 265


>gi|312899014|ref|ZP_07758401.1| radical SAM domain protein [Megasphaera micronuciformis F0359]
 gi|310619921|gb|EFQ03494.1| radical SAM domain protein [Megasphaera micronuciformis F0359]
          Length = 553

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 47/261 (18%), Positives = 88/261 (33%), Gaps = 40/261 (15%)

Query: 171 NRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQ 230
           + + G    + +  GC + C FC+  Y       R L+ V +   +    G         
Sbjct: 213 HTEFGAMYLVEVGRGCGRHCRFCMAGYCYRKPRMRPLAYVKEAVLRGKAAGKKI------ 266

Query: 231 NVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY 290
                   GL G   +    +  L E     +L ++ +  R  S   +   G  +     
Sbjct: 267 --------GLMGAAISDYPHIDELVEFIRSEKLSFSCASLRADSITPVIVKGLAESGQKT 318

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI-AISSDFIVGFPGETDDDFRA 349
           + L  ++GS  +   +N+          +D   +    I  +    +VG P ETD+D + 
Sbjct: 319 ITLAPEAGSVHMRNIINKGIEEEHLMHSVDLATAA--GIKHVRMYIMVGLPMETDEDIQG 376

Query: 350 TMDLVDKIGYAQA-----------FSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKL 398
            +D+  ++                    + P+  TP   M    D+     RL  ++   
Sbjct: 377 IIDMTLRVR-DHMSSIGNMSKITLSINPFIPKPCTPFQWMA-VTDKKTVDARLASIKAAF 434

Query: 399 REQQVSFNDACVGQIIEVLIE 419
           ++           + IEVLIE
Sbjct: 435 KK----------DRRIEVLIE 445


>gi|257463924|ref|ZP_05628309.1| radical SAM domain protein [Fusobacterium sp. D12]
          Length = 378

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 41/238 (17%), Positives = 78/238 (32%), Gaps = 30/238 (12%)

Query: 177 TAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR 236
            A + IQ GC + C FC           RSL + ++   K+I           Q+     
Sbjct: 29  RATVEIQRGCSRGCRFCQAGIVYRPVRERSLEKNLELIEKMI-----------QDTGYSE 77

Query: 237 GKGLDGEKCTFSDLLYSLSEIK-----GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL 291
                     +S++   ++ IK       V +   +      S  + ++           
Sbjct: 78  VSLSSLSSSDYSNIHQLIAGIKANPLNKNVGVSLPSLRMNPDSVRVAESISGGKR--TGF 135

Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351
               ++GS R+   +N+  T  E             D  +   F++G P ET++D  A  
Sbjct: 136 TFAPEAGSQRMRDIINKGVTEEEILLTAKEAVQAGWD-NLKFYFMIGLPFETEEDVLAIH 194

Query: 352 DLVDKIGY----------AQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLR 399
            L  K+ +                 + P+  TP +   +Q+       +   L++  R
Sbjct: 195 GLAKKVMFQCRPISKRVQVTVSVSNFVPKPHTPFA-WQKQMGFEEMHHKHTLLKEVFR 251


>gi|83593212|ref|YP_426964.1| lipoyl synthase [Rhodospirillum rubrum ATCC 11170]
 gi|123725966|sp|Q2RT68|LIPA_RHORT RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|83576126|gb|ABC22677.1| Lipoate synthase [Rhodospirillum rubrum ATCC 11170]
          Length = 314

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 38/209 (18%), Positives = 73/209 (34%), Gaps = 14/209 (6%)

Query: 161 ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN 220
           E  +  + G   KR    F+ + + C + C FC V    G        + V+ A  ++  
Sbjct: 54  EEAACPNIGECWKRRHATFMILGDICTRACAFCNVR--TGKPGHVDDQEPVNLADSVVAM 111

Query: 221 GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSD-CLIK 279
           G+  + +   +    R    DG    F   +  +        +   T   RD     L +
Sbjct: 112 GLKHVVITSVD----RDDLADGGAGHFHRCITEVRSRAPSCSIEVLTPDFRDKPQGALAR 167

Query: 280 AHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY-RQIIDRIRSVRPDIAISSDFIVG 338
                  +  +        +   L    R    Y +  +++DR++++ P +   S  +VG
Sbjct: 168 VVEAGPDVFNHNL-----ETVPRLYPTIRPGARYFHSLKLLDRVKTIDPGVFTKSGIMVG 222

Query: 339 FPGETDDDFRATMDLVDKIGYAQAFSFKY 367
             GET ++    MD +   G       +Y
Sbjct: 223 L-GETREEVLQVMDDMRSAGVDFLTIGQY 250


>gi|269121914|ref|YP_003310091.1| oxygen-independent coproporphyrinogen III oxidase [Sebaldella
           termitidis ATCC 33386]
 gi|268615792|gb|ACZ10160.1| oxygen-independent coproporphyrinogen III oxidase [Sebaldella
           termitidis ATCC 33386]
          Length = 357

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/191 (17%), Positives = 64/191 (33%), Gaps = 16/191 (8%)

Query: 186 CDKFCTFCVVPYT--RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
           CDK C +C        G EI R    ++ E+R         +   G              
Sbjct: 11  CDKKCFYCDFWTFINMGHEIDRYTDYIIKESRLYPVYYYDTVYFGGGTPGLIGADNF--A 68

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL-MPYLHLPVQSGSDRI 302
           K   +  +   +E+   +     ++              +     +  L + +QS  D +
Sbjct: 69  KILSALKVKENAEVTAEINPLNYSTED----------FRNYRKAGVNRLSIGIQSFQDHV 118

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           LK+  R H   +  +   + R    +  I+ D + G PG+T +D    + ++ +I     
Sbjct: 119 LKTAGRNHNGTQALETYRKAREAGFE-NITVDLMFGIPGQTLEDVYNDIKIIKEISPDHI 177

Query: 363 FSFKYSPRLGT 373
             +      GT
Sbjct: 178 SVYSLIWEEGT 188


>gi|16331659|ref|NP_442387.1| Mg-protoporphyrin IX monomethyl ester oxidative cyclase 66 kD
           subunit [Synechocystis sp. PCC 6803]
 gi|39930916|sp|Q55373|BCHE_SYNY3 RecName: Full=Magnesium-protoporphyrin IX monomethyl ester
           [oxidative] cyclase; Short=Mg-protoporphyrin IX
           monomethyl ester oxidative cyclase
 gi|1001215|dbj|BAA10457.1| Mg-protoporphyrin IX monomethyl ester oxidative cyclase 66 kD
           subunit [Synechocystis sp. PCC 6803]
          Length = 499

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 39/294 (13%), Positives = 89/294 (30%), Gaps = 35/294 (11%)

Query: 99  GDLLVVVAGCVAQAEGEEILRRSPIVNVVV---GPQTYYRLPELLERARFGKRVVDTDYS 155
            +L++V  G        +IL + P ++ +V   G  T  +L   LE      +V    + 
Sbjct: 94  PNLIIVYGGVFPTYHFHDILTKEPQIDFIVRGEGEATVAKLIAALENHNDLNKVDGIAFR 153

Query: 156 VEDKFERLSIVDGGYNRKRGVTAF------------------LTIQEGCDKFCTFCVVPY 197
            +++           +       +                  +    GC   C +C    
Sbjct: 154 RDEQIIETLPAPMIQDLDVYRVGWELVDLKKYSYYGGKQAVVIQFSRGCPHLCNYCGQRG 213

Query: 198 TRGIEISRSLSQVV-DEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS-LS 255
                  R   +   +       +GV    L  +N            K  + +   + ++
Sbjct: 214 FWARWRHRDPKKFAQEIVWLHRTHGVQLFNLADENPTV--------NKAIWQEFCEAIIA 265

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
           E   +  +  T +        ++  +      +    L +++ ++  LK + +       
Sbjct: 266 ENISITIIGSTRADDIVRDADILHLYRRAG--VERFLLGMENTNEATLKHIRKGSKTSTD 323

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369
           R+ I  +R    +I   + ++  F    D DF   +  +      Q  S   +P
Sbjct: 324 REAIRLLRQ--HNILSLATWVTDFEEVRDRDFIQALKQLLYYDPDQIMSLYVTP 375


>gi|156973520|ref|YP_001444427.1| lipoyl synthase [Vibrio harveyi ATCC BAA-1116]
 gi|166230445|sp|A7MY96|LIPA_VIBHB RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|156525114|gb|ABU70200.1| hypothetical protein VIBHAR_01211 [Vibrio harveyi ATCC BAA-1116]
          Length = 321

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/182 (14%), Positives = 61/182 (33%), Gaps = 10/182 (5%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V    G  +     +    A+ + D  +  + +   +    R    DG   
Sbjct: 94  CTRRCPFCDV--AHGRPLPVEAEEPKKLAKTIADMKLKYVVITSVD----RDDLRDGGAE 147

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
            F++    + E+   +++       R   D  +    D     P +       + R+ + 
Sbjct: 148 HFANCNREIRELNPHIKIETLVPDFRGRMDVALDLMKDNP---PDVFNHNLETAPRLYRK 204

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
                      Q++ + +   P++   S  ++G  GET ++    +  +   G       
Sbjct: 205 ARPGANYKWSLQLLQKFKEQHPNVPTKSGLMMGL-GETKEEIVEVLKDLRAHGVTMLTLG 263

Query: 366 KY 367
           +Y
Sbjct: 264 QY 265


>gi|134096159|ref|YP_001101234.1| lipoyl synthase [Herminiimonas arsenicoxydans]
 gi|172044171|sp|A4G9C6|LIPA_HERAR RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|133740062|emb|CAL63113.1| Lipoic acid synthase (Lipoate synthase)
           (Lipoyl-acyl-carrier-protein synthase) (Sulfur insertion
           protein lipA) (Lip-syn) [Herminiimonas arsenicoxydans]
          Length = 335

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 35/208 (16%), Positives = 74/208 (35%), Gaps = 12/208 (5%)

Query: 161 ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN 220
           E  S  + G    +G   F+ + + C + C FC V + R   +   +++  + A+ +   
Sbjct: 76  EEASCPNIGECFGKGTATFMIMGDKCTRRCPFCDVGHGRPDPL--DVNEPENLAKTIAAL 133

Query: 221 GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKA 280
            +  + +   +    R    DG    F++ +  + E+    R+       R   D  ++ 
Sbjct: 134 RLNYVVITSVD----RDDLRDGGAGHFAECIRRVRELSPNTRIEILVPDFRGRMDRALEI 189

Query: 281 HGDLDVLMPYLHLPVQSGSDRIL-KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGF 339
                 L P   +     +   L K             ++ R +++ P+    S  +VG 
Sbjct: 190 L----NLAPPDVMNHNLETAPRLYKEARPGSDYAYSLNLLKRFKALHPNTPTKSGIMVGL 245

Query: 340 PGETDDDFRATMDLVDKIGYAQAFSFKY 367
            GETD++    M  +           +Y
Sbjct: 246 -GETDEEVLQVMRDMRAHDVDMLTIGQY 272


>gi|260582060|ref|ZP_05849855.1| lipoyl synthase [Haemophilus influenzae NT127]
 gi|260094950|gb|EEW78843.1| lipoyl synthase [Haemophilus influenzae NT127]
          Length = 320

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 35/235 (14%), Positives = 78/235 (33%), Gaps = 12/235 (5%)

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           + +    E  S  +       G   F+ +   C + C FC V    G  +     +    
Sbjct: 61  HGLHSVCEEASCPNLHECFNHGTATFMILGAICTRRCPFCDV--AHGKPLPPDPEEPQKL 118

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
           A  + D  +  + +   +    R    D     FS+ + ++ E+   +++       R  
Sbjct: 119 AETIQDMKLKYVVITSVD----RDDLPDRGAGHFSECVKAVRELNPNIKIEILVPDFRGR 174

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
               ++   D     P +         R+ K +          +++   + + P+I   S
Sbjct: 175 ITQALEKLKDNP---PDVFNHNLENVPRLYKEIRPGADYGWSLKLLREFKEMFPNIPTKS 231

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP--RLGTPGSNMLEQVDENV 386
             +VG  GET+++    M  +   G       +Y    R   P +  +   + ++
Sbjct: 232 GLMVGL-GETNEEILQVMQDLRDNGVTMLTLGQYLQPSRHHLPVARYVPPTEFDI 285


>gi|150021246|ref|YP_001306600.1| radical SAM domain-containing protein [Thermosipho melanesiensis
           BI429]
 gi|149793767|gb|ABR31215.1| Radical SAM domain protein [Thermosipho melanesiensis BI429]
          Length = 449

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 39/234 (16%), Positives = 85/234 (36%), Gaps = 22/234 (9%)

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           + V++   +       L         K G   F+T   GC   C++C+          + 
Sbjct: 175 EEVLNVRINNTPIDWFLLPPKYELYNKLGYLVFITTI-GCPFKCSYCIAHRIWNGIRFKP 233

Query: 207 LSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
              V+ E  K +    V +I      +           K  F  +L  L + KG  + R+
Sbjct: 234 YELVLYEIEKYVKMFNVKDIVFFDDAILVN-------SKRHFKLILKELVK-KGYSKYRF 285

Query: 266 TTSHPRD---MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
              +      + + + +   +L+     + L  ++  +  +K+  +        +    +
Sbjct: 286 HLPNGIHAKLIDEEIAELMKELN--FKTIKLGYETAGELQIKTGGKVVDKDL-VKAARIL 342

Query: 323 RSV-RPDIAISSDFIVGFPGETDDDFRATMDLVDK--IGYAQAFSFKYSPRLGT 373
           R V   +  +S+  +V  PG+T  D +  +    +  IG++     +Y+P +GT
Sbjct: 343 RKVGFTEKEVSAYIMVNIPGQTVKDVKDAIKFCKEEGIGFS---INEYTPIVGT 393


>gi|126175482|ref|YP_001051631.1| lipoyl synthase [Shewanella baltica OS155]
 gi|160876566|ref|YP_001555882.1| lipoyl synthase [Shewanella baltica OS195]
 gi|217972272|ref|YP_002357023.1| lipoyl synthase [Shewanella baltica OS223]
 gi|304410309|ref|ZP_07391928.1| lipoic acid synthetase [Shewanella baltica OS183]
 gi|307301980|ref|ZP_07581738.1| lipoic acid synthetase [Shewanella baltica BA175]
 gi|166230437|sp|A3D7P9|LIPA_SHEB5 RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|189046789|sp|A9L014|LIPA_SHEB9 RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|254809201|sp|B8E4W4|LIPA_SHEB2 RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|125998687|gb|ABN62762.1| lipoic acid synthetase [Shewanella baltica OS155]
 gi|160862088|gb|ABX50622.1| lipoic acid synthetase [Shewanella baltica OS195]
 gi|217497407|gb|ACK45600.1| lipoic acid synthetase [Shewanella baltica OS223]
 gi|304351718|gb|EFM16117.1| lipoic acid synthetase [Shewanella baltica OS183]
 gi|306914018|gb|EFN44439.1| lipoic acid synthetase [Shewanella baltica BA175]
 gi|315268760|gb|ADT95613.1| lipoic acid synthetase [Shewanella baltica OS678]
          Length = 321

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/184 (14%), Positives = 58/184 (31%), Gaps = 14/184 (7%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V    G  +     + V  A+ + D  +  + +   +    R    DG   
Sbjct: 94  CTRRCPFCDV--AHGRPLKPDAEEPVKLAQTIRDMKLKYVVITSVD----RDDLRDGGAQ 147

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLD--VLMPYLHLPVQSGSDRIL 303
            F+D +  + ++   +++       R   D  +         V    L            
Sbjct: 148 HFADCIREIRKLNPDIKIETLVPDFRGRIDAALDILSTEPPDVFNHNLETAPMHY----- 202

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           +             ++ R +   P++   S  ++G  GET+++    +  +         
Sbjct: 203 RKARPGANYQWSLDLLKRFKERHPNVPTKSGLMMGL-GETNEEIAQVLRDLRAHNVEMLT 261

Query: 364 SFKY 367
             +Y
Sbjct: 262 LGQY 265


>gi|311895198|dbj|BAJ27606.1| hypothetical protein KSE_17820 [Kitasatospora setae KM-6054]
          Length = 575

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 75/221 (33%), Gaps = 26/221 (11%)

Query: 166 VDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG-IEISRSLSQVVDEARKLIDNGVCE 224
           VD     +RG    +  + GC   C+ CV P  +G     R L+ VVDE   L   G   
Sbjct: 207 VDNLEYYRRGGLGSILTKNGCAYRCSHCVEPDAKGTRYGQRELASVVDEMESLAAQG--- 263

Query: 225 ITLLGQNVNAWRGK-GLDGEKCTFSDLLYSLSEIK--GLVRLR-YTTSHPRDMSDCLIKA 280
             +L Q+         +   K    +++          L RLR +    P    +     
Sbjct: 264 --ILDQHTTDSEFNLSIAHAKNLLREIVRRRHADPDNPLNRLRLWVYCQPSPFDEEFADL 321

Query: 281 HGDLDVLMPYLHLPVQSGSDRIL------KSMNRRHTAYEYRQIIDRIRSVRPDIAISSD 334
                     +++        +L      +     +T  +  +++   R     I    +
Sbjct: 322 LAAAG--CRGVNVGSDHIRPELLSGWKVTEKGGTYYTFEDTERLVRLCRER--GILTMVE 377

Query: 335 FIVGFPGETDDDFRATMDLVDKI-----GYA-QAFSFKYSP 369
            + G PGET +  RA +D    +     G++     F Y+P
Sbjct: 378 ALFGMPGETPETVRACVDAFMALDATVTGFSLGLRLFPYTP 418


>gi|270295870|ref|ZP_06202070.1| oxygen-independent coproporphyrinogen III oxidase [Bacteroides sp.
           D20]
 gi|270273274|gb|EFA19136.1| oxygen-independent coproporphyrinogen III oxidase [Bacteroides sp.
           D20]
          Length = 376

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 46/236 (19%), Positives = 72/236 (30%), Gaps = 26/236 (11%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWR---GKGLD 241
           C   C +C          S          R L       +  L  + +       G    
Sbjct: 11  CKTRCIYC---DFYSTTRS---ELKQQYIRALCTELKTRKGYLKEEPIETIYFGGGTPSQ 64

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPR--DMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
                F  +  ++ E+ G       T      D+++  +     L      + + +Q+  
Sbjct: 65  LAHEDFEQIFRTIKEVYGTEHAEEITLEANPDDLTEEYVSMLRTLP--FNRISMGIQTFD 122

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIA-ISSDFIVGFPGETDDDFRATMDLVDKIG 358
              LK +NRRH A +    + R+R        IS D I G P ETD  +    DL   +G
Sbjct: 123 APTLKLLNRRHNAAQAIAAVHRLRQA--GFRNISIDLIYGLPDETDQRWER--DLQQAVG 178

Query: 359 YAQAFSFKY--SPRLGTPGSNMLE-----QVDENVKAERLLCLQKKLREQQVSFND 407
                   Y  +   GT    ML+     +VDE         L   L        +
Sbjct: 179 LDVEHISAYHLTYEKGTRIYEMLQSHRISEVDEESSVRFFSALMDTLGAAGYEHYE 234


>gi|237749360|ref|ZP_04579840.1| lipoyl synthase [Oxalobacter formigenes OXCC13]
 gi|229380722|gb|EEO30813.1| lipoyl synthase [Oxalobacter formigenes OXCC13]
          Length = 324

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 35/196 (17%), Positives = 70/196 (35%), Gaps = 14/196 (7%)

Query: 174 RGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS--QVVDEARKLIDNGVCEITLLGQN 231
            G  AF+ + + C + C FC V + R       L   + +  A+ +   G+  + +   N
Sbjct: 85  NGTAAFMVMGDRCTRRCPFCDVAHGRPD----PLDEKEPLRLAKTISALGLSYVVVTSVN 140

Query: 232 VNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL 291
               R    DG    F + + ++       R+   T   R   D  + A       +   
Sbjct: 141 ----RDDLRDGGASHFGECIRAIKLHSPNTRVEILTPDFRGKVDRALDALCQNPPDV--F 194

Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351
           +  +++     L+             ++       P++   S  +VG  GETD++    M
Sbjct: 195 NHNLETVPRLYLQ-ARPGADYSMSLNLLKAFGERCPNVPTKSGLMVGL-GETDEEIIEVM 252

Query: 352 DLVDKIGYAQAFSFKY 367
           + + K G +     +Y
Sbjct: 253 EDLRKHGVSMLTIGQY 268


>gi|258625412|ref|ZP_05720306.1| Lipoate synthase [Vibrio mimicus VM603]
 gi|258582323|gb|EEW07178.1| Lipoate synthase [Vibrio mimicus VM603]
          Length = 321

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/182 (14%), Positives = 63/182 (34%), Gaps = 10/182 (5%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V    G   +    +    A+ + D  +  + +   +    R    DG   
Sbjct: 94  CTRRCPFCDV--AHGRPNAPEAEEPKKLAQTIHDMKLKYVVITSVD----RDDLRDGGAQ 147

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
            F+D    +  +   +R+       R   +  ++A  D     P +       + R+ + 
Sbjct: 148 HFADCNREIRALNPSIRIETLVPDFRGRMEVALEALKDNP---PDVFNHNLETAPRLYRK 204

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           +          +++ + +   P++   S  ++G  GET ++    +  +   G       
Sbjct: 205 VRPGANYKWSLELLRQFKEQHPNVPTKSGLMMGL-GETKEEIVEVLKDLRAHGVTMLTLG 263

Query: 366 KY 367
           +Y
Sbjct: 264 QY 265


>gi|269791762|ref|YP_003316666.1| Radical SAM domain-containing protein [Thermanaerovibrio
           acidaminovorans DSM 6589]
 gi|269099397|gb|ACZ18384.1| Radical SAM domain protein [Thermanaerovibrio acidaminovorans DSM
           6589]
          Length = 352

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/202 (13%), Positives = 66/202 (32%), Gaps = 17/202 (8%)

Query: 175 GVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ--VVDEARKLIDNGVCEITLLGQNV 232
            +   +     C   C +C +           + +  +V  A + I  G   + L     
Sbjct: 59  HIRGIIEFSSHCSGRCLYCGLRADNRDLARYRMEEEEIVRCAEEAIGAGYMSLVLQS--- 115

Query: 233 NAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLH 292
               G+    ++ T   ++  +  IK +           +    L +A  D         
Sbjct: 116 ----GEDGWYDRWTLGRVIERIKGIKDVAITLSIGERSYEDYRYLRQAGADR------FL 165

Query: 293 LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352
           +  ++    +   ++   +     + + +++ +     + S F+VG PG+T       + 
Sbjct: 166 MKHETADQGLYDRLHPHSSFRRRLECLTQLKEL--GYQVGSGFMVGLPGQTLRSIARDVL 223

Query: 353 LVDKIGYAQAFSFKYSPRLGTP 374
           L+ K+    A    + P   TP
Sbjct: 224 LLKKLDVDMAGIGPFVPHPRTP 245


>gi|226501602|ref|NP_001152192.1| oxygen-independent coproporphyrinogen III oxidase-like protein
           sll1917 [Zea mays]
 gi|195653683|gb|ACG46309.1| oxygen-independent coproporphyrinogen III oxidase-like protein
           sll1917 [Zea mays]
          Length = 475

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/209 (15%), Positives = 67/209 (32%), Gaps = 18/209 (8%)

Query: 186 CDKFCTFCVVPYTRGIEISRS-----LSQ--VVDEARKLIDNGVCEITLLGQNVNAWRGK 238
           C K C +C  P       S            +VD    L+   V     +  +       
Sbjct: 64  CRKRCHYCDFPIIALGSSSAPSRGEAAEDPRIVDYVNLLLRE-VSATRPVSDDGVPLETV 122

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCL----IKAHGDLDVL---MPYL 291
              G   +       ++ +   +R R+  S   ++S  +      A    +++   +  +
Sbjct: 123 FFGGGTPSLV-PPRLVATVLDALRARFGLSARPEVSIEMDPGTFDAARLKELVGVGVNRV 181

Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS-DFIVGFPGETDDDFRAT 350
            L VQ+  + +L++  R H   E  + +  I +    +   S D I   P +T++ +  +
Sbjct: 182 SLGVQAFQEDLLRACGRAHGVKEVHEAVA-IVTACEGLQNWSMDLISSLPNQTEEMWEES 240

Query: 351 MDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
           +             +      GT    M 
Sbjct: 241 LRCTVDARPTHVSVYDLQIEQGTKFGQMY 269


>gi|21325063|dbj|BAB99685.1| Coproporphyrinogen III oxidase and related FeS oxidoreductases
           [Corynebacterium glutamicum ATCC 13032]
          Length = 330

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 36/168 (21%), Positives = 65/168 (38%), Gaps = 17/168 (10%)

Query: 254 LSEIKGLVRLRYTTSHPRDMS---------DCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304
           L+ + G VR  +  +   +++                 +       + L +QS S  +LK
Sbjct: 28  LARVLGAVRNTFGIADGAEVTTESNPESTSPEFFDGLREAG--YNRISLGMQSASSSVLK 85

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
            ++R HT           R    +  ++ D I G P ETDDD R T+D V +       +
Sbjct: 86  VLDRTHTPGRPVAAAKEAREAGFE-HVNLDMIYGTPTETDDDVRKTLDAVLEANVDHVSA 144

Query: 365 FKYSPRLGTPGSNMLEQ-----VDENVKAERLLCLQKKLREQQVSFND 407
           +      GT  +  + +      DE+V A+R   +  +LR     + +
Sbjct: 145 YSLIVEDGTAMARKVRKGELPAPDEDVYADRFELIDARLRSAGFDWYE 192


>gi|83648998|ref|YP_437433.1| coproporphyrinogen III oxidase-like protein [Hahella chejuensis
           KCTC 2396]
 gi|83637041|gb|ABC33008.1| Coproporphyrinogen III oxidase and related Fe-S oxidoreductase
           [Hahella chejuensis KCTC 2396]
          Length = 388

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/217 (14%), Positives = 69/217 (31%), Gaps = 31/217 (14%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C +C          S +         +L +    +  L   +   +R + + G++ 
Sbjct: 23  CVRKCPYC-------DFNSHTARS------ELPEREYLQALLSDLDTEMFRLEQIGGKRA 69

Query: 246 TFS----------DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL-------M 288
             S               ++ +    R R       +++        D           +
Sbjct: 70  LGSIFFGGGTPSLLSPDIIASVIDGARQRLGFHDDIEITLEANPGTVDEAKFKDLFQGGV 129

Query: 289 PYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFR 348
             L L VQS    +L ++ R H   +  + +D+ R    D   + D + G PG++     
Sbjct: 130 NRLSLGVQSFQPELLTTLGRIHNGEDAIRAVDKARQAGFD-NFNLDLMHGLPGQSLQHAM 188

Query: 349 ATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
             +D    +G      ++ +    T       Q+ E+
Sbjct: 189 EDLDTAISLGPTHLSWYQLTIEPNTEFYRHPPQLPED 225


>gi|225018910|ref|ZP_03708102.1| hypothetical protein CLOSTMETH_02861 [Clostridium methylpentosum
           DSM 5476]
 gi|224948316|gb|EEG29525.1| hypothetical protein CLOSTMETH_02861 [Clostridium methylpentosum
           DSM 5476]
          Length = 341

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/206 (16%), Positives = 76/206 (36%), Gaps = 18/206 (8%)

Query: 176 VTAFLTIQEGCDKFCTFCVV-PYTRGIEISR-SLSQVVDEARKLIDNGVCEITLLGQNVN 233
           + A L     C + C +C +     G+E  R   +Q+V+ AR+  + G   I L      
Sbjct: 60  IRAILEFSNHCRRQCRYCGLNRNNTGLERYRIQPAQMVETARQAWEAGYRTIVLQS---- 115

Query: 234 AWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHL 293
              G+          +++  + +    + +  +           ++A G    L+ +   
Sbjct: 116 ---GEDGYYTAQMLGEVVKEIKKTG--MAVTLSCGELPVEDYAYLRACGADRYLLKH--- 167

Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
             ++   ++  S++   T       +  I+ +       S F++G PG+T++     + L
Sbjct: 168 --ETADTQLYSSLHPCGTLENRVSCLREIKRL--GYETGSGFMIGLPGQTEETIARDLLL 223

Query: 354 VDKIGYAQAFSFKYSPRLGTPGSNML 379
           + ++    A    + P   TP  +  
Sbjct: 224 LQELNCDMAGIGPFVPHPDTPLRDHP 249


>gi|224826416|ref|ZP_03699518.1| Radical SAM domain protein [Lutiella nitroferrum 2002]
 gi|224601517|gb|EEG07698.1| Radical SAM domain protein [Lutiella nitroferrum 2002]
          Length = 637

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 70/192 (36%), Gaps = 26/192 (13%)

Query: 180 LTIQEGCDKF-CTFCVVPYTRGIEISR----SLSQVVDEARKLIDNGVCEITLLGQNVNA 234
           LT+  GC    C+FC V       ISR    S + +VD    +I          GQ    
Sbjct: 366 LTVAHGCYWKKCSFCDVTL---DYISRYETASAATLVDRIEAIIAE-------TGQTGFH 415

Query: 235 WRGKGLDGE--KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLH 292
           +  +    +  +    +LL     I     +R+     +  +  L +   +   +   + 
Sbjct: 416 FVDEAAPPKMLRALAEELLRRNVSISWWGNIRF----EKSFTPELCQLLAESGCIA--IS 469

Query: 293 LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352
             ++  SDR+LK M +  +  +  ++          I + +  + GFP +T  D    ++
Sbjct: 470 GGLEVASDRLLKLMKKGVSVEQVARVTQGFTEA--GILVHAYLMYGFPTQTVQDTVDALE 527

Query: 353 LVDKIGYAQAFS 364
            V ++ +     
Sbjct: 528 YVRQL-FDNGCI 538


>gi|71279192|ref|YP_269140.1| radical SAM domain/B12 binding domain-containing protein [Colwellia
           psychrerythraea 34H]
 gi|71144932|gb|AAZ25405.1| radical SAM domain/B12 binding domain protein [Colwellia
           psychrerythraea 34H]
          Length = 551

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 41/281 (14%), Positives = 95/281 (33%), Gaps = 18/281 (6%)

Query: 99  GDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT---YYRLPELLERARFGKRVVDTDYS 155
            ++ VV+ G     E E+    +    V+ GP     Y    +++      K+V+++   
Sbjct: 132 PEIKVVLGGPEVSYETEQQGIVACADYVLTGPADISFYQLCKDIINETPPDKKVLNSKPV 191

Query: 156 VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS--QVVDE 213
             ++           + K  +  ++    GC   C FC+    +    S        +++
Sbjct: 192 PLEEIALPYEYYTDEDLKHRLL-YVEASRGCPFKCEFCLSSLDKS---STPFELTAFLEQ 247

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
              L   G      + +  N            T   + + L  +   + L +    P  +
Sbjct: 248 MEILYQRGARNFKFIDRTFNLNI-------NTTMQIMQFFLDRMTEDLYLHFEVV-PDHL 299

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
              L +             + +Q+ +  +  +++R+    + ++ +  +R       I +
Sbjct: 300 PRKLKELLAQFPEGSLQFEIGIQTFNVEVQANISRKQNNAKSKENLLWLRDNT-SAHIHA 358

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
           D I G PGET D F+ + + +      +          G+P
Sbjct: 359 DLIFGLPGETFDTFKDSFNQLYHCRPHEIQMGILKRLKGSP 399


>gi|13470626|ref|NP_102195.1| lipoyl synthase [Mesorhizobium loti MAFF303099]
 gi|22001783|sp|Q98MY2|LIPA_RHILO RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|14021368|dbj|BAB47981.1| lipoic acid synthetase [Mesorhizobium loti MAFF303099]
          Length = 321

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 36/241 (14%), Positives = 81/241 (33%), Gaps = 11/241 (4%)

Query: 127 VVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGC 186
           V+    + R+   + +     R +   + +    E     + G   ++    F+ + E C
Sbjct: 27  VLRKPDWIRVKAPVSKGYAETREIVKSHKLVTVCEEAGCPNIGECWEKKHATFMIMGEIC 86

Query: 187 DKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT 246
            + C FC V    GI  +    +    A  +   G+  + +   +    R    DG    
Sbjct: 87  TRACAFCNV--ATGIPTALDPDEPARVAHAVKQMGLSHVVITSVD----RDDLADGGAQH 140

Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306
           F+D++ ++        +   T         L         +  +    +++     LK +
Sbjct: 141 FADVIRAIRAATPSTTIEILTPDFLRKDGALEIVVAARPDVFNH---NLETVPSNYLK-V 196

Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
                 +   +++ R++ + P I   S  +VG  GE  ++    MD +           +
Sbjct: 197 RPGARYFHSIRLLQRVKELDPSIFTKSGIMVGL-GEERNEILQLMDDLRSANVDFMTIGQ 255

Query: 367 Y 367
           Y
Sbjct: 256 Y 256


>gi|209527209|ref|ZP_03275721.1| Radical SAM domain protein [Arthrospira maxima CS-328]
 gi|209492367|gb|EDZ92710.1| Radical SAM domain protein [Arthrospira maxima CS-328]
          Length = 526

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 44/307 (14%), Positives = 95/307 (30%), Gaps = 38/307 (12%)

Query: 78  EKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLP 137
            +++     +R   N   +       VV G       E++    P   ++    +     
Sbjct: 117 NELWRNTSLVRQGLNRARRYQPQARAVVGGGAVSVFYEQLGESLPDGTII----SVGEGE 172

Query: 138 ELLERARFGKRVVDT-----------DYSVEDKFERLSIVDGGYNRKRGVTA-------- 178
            LLE+   G+   +            D  + +K   +      Y+    V          
Sbjct: 173 ALLEKLLRGEDFSNERCYVVGQTQPRDRMIHEKPTNIEKTACNYDYISQVWPEFDYYFQD 232

Query: 179 -----FLTIQEGCDKFCTFCVVPYTRGIEISR-SLSQVVDEARKLIDNGVCEITLL-GQN 231
                 +  + GC   C +CV     G ++      +VV E ++L   G+        Q 
Sbjct: 233 GDFYIGVQTKRGCPHNCCYCVYTVIEGKQVRINPADEVVAEMQQLYHRGIRNFWFTDAQF 292

Query: 232 VNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL 291
           + A R            +LL  + +               +++  L +        M Y 
Sbjct: 293 IPARRFID------DAVELLQKILDAGMNDINWAAYIRADNLTPQLCELMVKTG--MNYF 344

Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351
            + + SGS  +++ M   +      +    +++   +  +S ++      ET D  R T+
Sbjct: 345 EIGITSGSQELVRKMRMGYNLRVVLENCRDLKAAGFNDLVSVNYSFNVIDETFDTIRQTI 404

Query: 352 DLVDKIG 358
               ++ 
Sbjct: 405 AYHRELE 411


>gi|157369438|ref|YP_001477427.1| lipoyl synthase [Serratia proteamaculans 568]
 gi|166990685|sp|A8GB09|LIPA_SERP5 RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|157321202|gb|ABV40299.1| lipoic acid synthetase [Serratia proteamaculans 568]
          Length = 321

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 45/286 (15%), Positives = 95/286 (33%), Gaps = 19/286 (6%)

Query: 118 LRRSPIVNVVVGPQTYYRLPELLERAR-------FGKRVVDTDYSVEDKFERLSIVDGGY 170
           +   P+  VV   Q   R PE ++           G +       +    E  S  +   
Sbjct: 19  MALIPVKTVVTERQELLRKPEWMKIKLPADSTRIQGIKAAMRKNGLHSVCEEASCPNLSE 78

Query: 171 NRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQ 230
               G   F+ +   C + C FC V    G  ++   ++    A+ + D G+  + +   
Sbjct: 79  CFNHGTATFMILGAICTRRCPFCDV--AHGRPVAPDANEPEKLAQTIADMGLRYVVITSV 136

Query: 231 NVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY 290
           +    R    DG    F+D + ++      +++       R   D  ++   +     P 
Sbjct: 137 D----RDDLRDGGAQHFADCIAAIRAKNPTIKIETLVPDFRGRMDRALEILTETP---PD 189

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
           +         R+ + +          ++++R +   P I   S  +VG  GET+ +    
Sbjct: 190 VFNHNLENVPRVYRQVRPGANYEWSLKLLERFKEAHPHIPTKSGLMVGL-GETNAEIVEV 248

Query: 351 MDLVDKIGYAQAFSFKYSP--RLGTPGSNMLEQVDENVKAERLLCL 394
           M  + + G       +Y    R   P    +   + +   E  + +
Sbjct: 249 MRDLRRHGVTMLTLGQYLQPSRHHLPVQRYVSPAEFDEMKEEAMAM 294


>gi|303246587|ref|ZP_07332865.1| oxygen-independent coproporphyrinogen III oxidase [Desulfovibrio
           fructosovorans JJ]
 gi|302491927|gb|EFL51805.1| oxygen-independent coproporphyrinogen III oxidase [Desulfovibrio
           fructosovorans JJ]
          Length = 375

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 39/202 (19%), Positives = 74/202 (36%), Gaps = 21/202 (10%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEK 244
           C   C +C         +SR     + +    +   + EI   G+ ++  + + +  G  
Sbjct: 10  CRGKCRYCS-------FVSRPFD--MGQVEAYVATLLLEIRHWGRKLSRPKLETIYFGGG 60

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHG----DLDVLMPY----LHLPVQ 296
                  ++L+ I   +R ++      + +             L  L+ Y    L L VQ
Sbjct: 61  TPSLLPPWALARIMPELRRQFDLDDVVEWTFEANPDSAVDGPYLKSLLKYGVNRLSLGVQ 120

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSV-RPDIAISSDFIVGFPGETDDDFRATMDLVD 355
           S SD  L+ + R H A +        R V   +I++  DFI G PG+ +  +   +    
Sbjct: 121 SLSDADLRFLGRPHDAGQAIAAYGLARQVGFKNISL--DFIWGLPGQREAVWLEQLRTAV 178

Query: 356 KIGYAQAFSFKYSPRLGTPGSN 377
           K+       +  +   GTP + 
Sbjct: 179 KLRPEHLSCYGLTVEAGTPLAE 200


>gi|262165186|ref|ZP_06032923.1| lipoate synthase [Vibrio mimicus VM223]
 gi|262024902|gb|EEY43570.1| lipoate synthase [Vibrio mimicus VM223]
          Length = 315

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/182 (14%), Positives = 63/182 (34%), Gaps = 10/182 (5%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V    G   +    +    A+ + D  +  + +   +    R    DG   
Sbjct: 88  CTRRCPFCDV--AHGRPNAPEAEEPKKLAQTIHDMKLKYVVITSVD----RDDLRDGGAQ 141

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
            F+D    +  +   +R+       R   +  ++A  D     P +       + R+ + 
Sbjct: 142 HFADCNREIRALNPNIRIETLVPDFRGRMEVALEALKDNP---PDVFNHNLETAPRLYRK 198

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           +          +++ + +   P++   S  ++G  GET ++    +  +   G       
Sbjct: 199 VRPGANYKWSLELLRQFKEQHPNVPTKSGLMMGL-GETKEEIVEVLKDLRAHGVTMLTLG 257

Query: 366 KY 367
           +Y
Sbjct: 258 QY 259


>gi|154248939|ref|YP_001409764.1| biotin synthase [Fervidobacterium nodosum Rt17-B1]
 gi|154152875|gb|ABS60107.1| Radical SAM domain protein [Fervidobacterium nodosum Rt17-B1]
          Length = 349

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/230 (17%), Positives = 81/230 (35%), Gaps = 21/230 (9%)

Query: 152 TDYSVEDKFERLSIVDGGYNRKR-GVTAFLTIQEGCDKFCTFCVVPYTRGIE-ISR-SLS 208
           TD   E+ F+    V   Y      + A +     C + C +C +          R +  
Sbjct: 21  TDEHNEEIFKVADEVRRKYVGTEVHLRAIIEFSNYCSQHCLYCGLRAENRNLNRYRMTEE 80

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
           ++++ AR +   G+  I L         G+       T   + Y ++EIK L      + 
Sbjct: 81  EILERARLIAKLGIKTIVLQS-------GEDPY---YTTERISYLITEIKKLDVAITLSI 130

Query: 269 HPRDMS-DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
             RD     + K  G    LM +     ++ S  +   ++   +    +  +  ++ +  
Sbjct: 131 GERDFEEYKIWKELGADRYLMRH-----ETASPELYAKLHPGDSFENRKAHLFELKRL-- 183

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
                +  +VG PG+T  D    +  + ++         + P   TP +N
Sbjct: 184 GYETGAGCMVGLPGQTPYDMALDLAFLKELDADMIGIGPFIPNPDTPLAN 233


>gi|331000087|ref|ZP_08323782.1| radical SAM domain protein [Parasutterella excrementihominis YIT
           11859]
 gi|329572971|gb|EGG54591.1| radical SAM domain protein [Parasutterella excrementihominis YIT
           11859]
          Length = 463

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 38/219 (17%), Positives = 81/219 (36%), Gaps = 20/219 (9%)

Query: 170 YNRKRGVTAFLTIQEGCDKFCTFCV--VPYTRGIEISRSLSQ-VVDEARKLIDNGVCEIT 226
             R R   A++ +   C+  C +C+  +   R  E S++ +  ++ E +   D  V +  
Sbjct: 72  KPRTRRTVAYINVPY-CETRCLYCLFYIKPYRNKEESKAFADTLIKELQLWSDKPVQK-- 128

Query: 227 LLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDC-------LIK 279
             G+ V+A    G  G           +  I   VR     ++  +++           K
Sbjct: 129 --GEPVHAVYFGG--GTPTALEAC--DIERIIKAVRRYLPLANDCEITYEGRLSGFGTDK 182

Query: 280 AHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGF 339
               L        L VQS   +I +++ RR       + ++++ S     A+  D I GF
Sbjct: 183 MEAALAGGANRFSLGVQSFDTKIRQAVGRRSDKETLIRQLEKLMSY-DQAAVVIDLIYGF 241

Query: 340 PGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           P +T + ++  + +  ++       ++      +P    
Sbjct: 242 PFQTLETWKEDLRIGRELNLDGIDCYQLRVFEKSPLYKY 280


>gi|158320492|ref|YP_001512999.1| radical SAM domain-containing protein [Alkaliphilus oremlandii
           OhILAs]
 gi|158140691|gb|ABW19003.1| Radical SAM domain protein [Alkaliphilus oremlandii OhILAs]
          Length = 342

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/196 (16%), Positives = 72/196 (36%), Gaps = 14/196 (7%)

Query: 176 VTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLID-----NGVCEITLLGQ 230
           +        GC   C+FC      GI    +  QV++     ++     N   EI   G 
Sbjct: 7   IIPIFIPHRGCPHDCSFCNQKKIAGIGTDVTAEQVLEIIEAQLEHLKDVNRPKEIAFYG- 65

Query: 231 NVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY 290
              ++ G   + ++   +       ++  +  +R +T  P  +++ +++  G     +  
Sbjct: 66  --GSFTGLPYEQQRQLLAMAYEK-KKLNFIQDIRIST-RPDYINEEILQLLGSYG--VSI 119

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
           + L VQS    +L+  NR H+  +  +    I+    +I +    +VG  G+T +    T
Sbjct: 120 IELGVQSTDPTVLELNNRGHSKEDVYRAAALIKKQ--NIQLGLQMMVGLYGDTKEKMLRT 177

Query: 351 MDLVDKIGYAQAFSFK 366
              +          + 
Sbjct: 178 ARDIIDCTPDFVRIYP 193


>gi|85860142|ref|YP_462344.1| radical SAM superfamily protein [Syntrophus aciditrophicus SB]
 gi|85723233|gb|ABC78176.1| radical SAM superfamily protein [Syntrophus aciditrophicus SB]
          Length = 363

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 35/189 (18%), Positives = 67/189 (35%), Gaps = 17/189 (8%)

Query: 185 GCDKFCTFC---VVPYTRGIEIS-RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL 240
           GC + C FC   +   T     S  +  + V    +    G   + +      A+ G   
Sbjct: 22  GCRQRCIFCNESITTGTFPAAFSEAAFEKTVTLYSENQKRGKSPVQI------AFYGGTF 75

Query: 241 DGEKCTFSDLLYSLSE---IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQS 297
            G        L  L+E    +G V     ++ P ++ + L+         +  + L  QS
Sbjct: 76  TGMDRKEQTRLLQLAEPYIREGRVDSLRISTRPDEIDEDLLDFLRRHG--VRTVELGAQS 133

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
             + +L+   R HT  +    ++R+R       +    ++G PG++   F AT+D    +
Sbjct: 134 LVEEVLRHSRRGHTVGDVFSAVERLRRK--GFEVGIHLMMGLPGDSPQFFAATIDRTLDL 191

Query: 358 GYAQAFSFK 366
                    
Sbjct: 192 QPDTVRLHP 200


>gi|62988298|ref|NP_001017944.1| lipoyl synthase, mitochondrial precursor [Bos taurus]
 gi|75057769|sp|Q5BIP7|LIAS_BOVIN RecName: Full=Lipoyl synthase, mitochondrial; AltName: Full=Lipoate
           synthase; Short=LS; Short=Lip-syn; AltName: Full=Lipoic
           acid synthase; Flags: Precursor
 gi|60650254|gb|AAX31359.1| lipoic acid synthetase isoform 1 precursor [Bos taurus]
 gi|296486611|gb|DAA28724.1| lipoyl synthase, mitochondrial precursor [Bos taurus]
          Length = 372

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 67/186 (36%), Gaps = 15/186 (8%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLS--QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
           C + C FC V   R       L   +  + A+ + + G+  + L   +    R    DG 
Sbjct: 137 CTRGCRFCSVKTARNP---PPLDANEPYNTAKAIAEWGLDYVVLTSVD----RDDMPDGG 189

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPR-DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
              F+  +  L E    + +   T   R D+      A   LDV    +    +      
Sbjct: 190 AEHFAKTVSYLKERNPKILVECLTPDFRGDLKAIEKVALSGLDVYAHNVETVPE----LQ 245

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
            K  + R    +  +++   + VRPD+   +  ++G  GE D+   ATM  + +      
Sbjct: 246 RKVRDPRANFDQSLRVLKHAKEVRPDVISKTSIMLGL-GENDEQVYATMKALREADVDCL 304

Query: 363 FSFKYS 368
              +Y 
Sbjct: 305 TLGQYM 310


>gi|237741210|ref|ZP_04571691.1| oxygen-independent coproporphyrinogen III oxidase [Fusobacterium
           sp. 4_1_13]
 gi|256846346|ref|ZP_05551803.1| oxygen-independent coproporphyrinogen III oxidase [Fusobacterium
           sp. 3_1_36A2]
 gi|229430742|gb|EEO40954.1| oxygen-independent coproporphyrinogen III oxidase [Fusobacterium
           sp. 4_1_13]
 gi|256718115|gb|EEU31671.1| oxygen-independent coproporphyrinogen III oxidase [Fusobacterium
           sp. 3_1_36A2]
          Length = 348

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 35/213 (16%), Positives = 68/213 (31%), Gaps = 14/213 (6%)

Query: 174 RGVTAFLTIQE-GCDKFCTFCVVPYTRGIEISRSLSQVVDEA----RKLIDNGVCEITLL 228
           +     + I   GC   C FC      G E   SL  + +      + L  N + ++   
Sbjct: 2   KHYNIPVFISHFGCPNACVFCNQKKINGRETDVSLDDLKNIIDSYLKTLPKNSIKQVAFF 61

Query: 229 GQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLM 288
           G       G  +D +K     +   +           T     D    ++         +
Sbjct: 62  GGTFT---GISMDLQKEYLEVVKKYIDNNDVEGVRISTRPECIDD--EILTQLKKYG--V 114

Query: 289 PYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFR 348
             + L +QS  D++LK+  R +T    ++  D I+S      +    ++G P        
Sbjct: 115 KTIELGIQSLDDKVLKATGRNYTYDIVKKSCDLIKSY--GFELGVQLMIGLPKSDYKSDL 172

Query: 349 ATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
            +     ++    A  +      GT    M ++
Sbjct: 173 QSAIKSLELNPDIARIYPTLVIKGTELEFMYKK 205


>gi|37678826|ref|NP_933435.1| Fe-S oxidoreductase [Vibrio vulnificus YJ016]
 gi|37197567|dbj|BAC93406.1| predicted Fe-S oxidoreductase [Vibrio vulnificus YJ016]
          Length = 330

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 34/134 (25%), Positives = 55/134 (41%), Gaps = 13/134 (9%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +L L +Q+ S+  LK +NR H    Y +I  R R++   I + +  IVG P E+ DD   
Sbjct: 153 WLELGLQTASNDTLKRINRGHDFECYAEITQRARAL--GIKVCTHLIVGLPKESRDDNFT 210

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDAC 409
           T++ V ++G             G+  +          KA R   L     EQ V      
Sbjct: 211 TLEKVIEVGTDGIKLHGLHIVEGSTMA----------KAWRAGKLDAPELEQYVEIACEM 260

Query: 410 VGQI-IEVLIEKHG 422
           + +   EV+  +  
Sbjct: 261 IRRTPPEVIFHRVS 274


>gi|329905291|ref|ZP_08274085.1| Lipoate synthase [Oxalobacteraceae bacterium IMCC9480]
 gi|327547638|gb|EGF32430.1| Lipoate synthase [Oxalobacteraceae bacterium IMCC9480]
          Length = 330

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 70/208 (33%), Gaps = 12/208 (5%)

Query: 161 ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN 220
           E  S  + G    +G   F+ + + C + C FC V + R   +     +  + A+ +   
Sbjct: 73  EEASCPNIGECFGKGTATFMIMGDKCTRRCPFCDVGHGRPDPL--DADEPENLAKTIAAL 130

Query: 221 GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKA 280
            +  + +   +    R    DG    F++ +  +  +    R+       R   D  ++ 
Sbjct: 131 RLNYVVITSVD----RDDLRDGGAGHFAECIRRIRALSPSTRIEILVPDFRGRMDRALEI 186

Query: 281 HGDLDVLMPYLHLPVQSGSDRIL-KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGF 339
                 L P   +     +   L K             ++ R + + P+    S  +VG 
Sbjct: 187 L----NLAPPDVMNHNLETAPRLYKEARPGSDYEYSLNLLKRFKDLHPNTPTKSGIMVGL 242

Query: 340 PGETDDDFRATMDLVDKIGYAQAFSFKY 367
            GETD++    M  +           +Y
Sbjct: 243 -GETDEEILQVMRDLRAHNVDMLTIGQY 269


>gi|320017067|gb|ADW00639.1| coproporphyrinogen III oxidase, SAM and NAD(P)H dependent,
           oxygen-independent [Yersinia pestis biovar Medievalis
           str. Harbin 35]
          Length = 456

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 44/244 (18%), Positives = 90/244 (36%), Gaps = 13/244 (5%)

Query: 173 KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNV 232
           +R ++ ++ I   C K C FC        +  ++   +V   +++           G+ V
Sbjct: 50  QRPLSLYVHIPF-CHKLCYFCGCNKLVTRQQHKADEYLVVLEKEIRQ---RAALFTGRQV 105

Query: 233 N--AWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS--HPRDMSDCLIKAHGDLDVLM 288
           +   W G      K   S L+  L E    +     +    PR++   ++          
Sbjct: 106 SQMHWGGTPTYLNKTQISHLMTVLREHFDFLPDAEQSIEVDPREIELDVLDHLRAEG--F 163

Query: 289 PYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFR 348
             L + VQ  +  + + +NR         +I R +++  + + + D I G P +T + F 
Sbjct: 164 NRLSMGVQDFNKEVQRLVNREQDEDFIFALIARAKALGFN-STNIDLIYGLPKQTPESFA 222

Query: 349 ATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFND 407
            T+  V ++   +   F Y+       +   ++  D     +RL  LQ  +R    S   
Sbjct: 223 FTLKRVAELNPDRLSVFNYAHLPSLFAAQRKIKDADLPTAEQRLDILQHTIRFLTESGYQ 282

Query: 408 ACVG 411
             +G
Sbjct: 283 -FIG 285


>gi|281424410|ref|ZP_06255323.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Prevotella oris F0302]
 gi|281401679|gb|EFB32510.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Prevotella oris F0302]
          Length = 350

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 47/92 (51%), Gaps = 3/92 (3%)

Query: 288 MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV-RPDIAISSDFIVGFPGETDDD 346
           +  + +  Q+ ++  L+ ++RRH   E  Q ++R+R V   +I+I  D + GFP ET ++
Sbjct: 84  VNRVSMGAQTFNNNRLRFLHRRHNREEIMQAVNRLRHVGIKNISI--DLMFGFPEETMEE 141

Query: 347 FRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           ++  +    K+      ++      GTP  +M
Sbjct: 142 WQTNLQEAIKLNVEHISAYSLMYEEGTPLFHM 173


>gi|218779020|ref|YP_002430338.1| radical SAM domain protein [Desulfatibacillum alkenivorans AK-01]
 gi|218760404|gb|ACL02870.1| Radical SAM domain protein [Desulfatibacillum alkenivorans AK-01]
          Length = 497

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 46/251 (18%), Positives = 83/251 (33%), Gaps = 28/251 (11%)

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           +  VD D      +  +++ D     +      L    GC   C +C      G    R+
Sbjct: 159 RPPVDLDSLPLPPYHLVNVEDYVQVYRGKRMINLESSRGCAHHCRYCYHTGQSGNHRFRA 218

Query: 207 LSQVVDEARKLIDNGVCE---ITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           ++      R            + L+  N    R +               ++ +K   R 
Sbjct: 219 MNAEKTLERMFWARDSMNLDGVYLVDDNFFLNRNRSA-----------AVVAALKNQSRQ 267

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPY----LHLPVQSGSDRILKSMNRRHTAYEYRQII 319
            Y      D+   L      L  L       + +  +SGS +IL  +N+ HT     +  
Sbjct: 268 FYWQIQGVDVPSMLRFDQAGLQDLEKSGLQRVSVGAESGSPKILNYVNKPHTVPMLLKAN 327

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF-----SFKYSPRLGTP 374
                    I I   ++ G PGET  D + T+ ++ +I            + + P  GT 
Sbjct: 328 KLWSGF--SIYIFYSWLSGLPGETLADLKKTVKVMFRIMEDNPNARLSPIYNFLPFPGT- 384

Query: 375 GSNMLEQVDEN 385
             +M ++V +N
Sbjct: 385 --SMWDEVTDN 393


>gi|220915848|ref|YP_002491152.1| Radical SAM domain protein [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219953702|gb|ACL64086.1| Radical SAM domain protein [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 898

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 46/293 (15%), Positives = 91/293 (31%), Gaps = 52/293 (17%)

Query: 179 FLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLI-DNGVCEITLLGQNVNAWRG 237
            + +Q GC + C FC V         R   QV+  A   +  +G  E+ LL  +   +  
Sbjct: 271 PIELQRGCTRGCRFCQVGMITRPTRQRDPKQVLALAETGLRASGYEEVGLLSLSSGDY-- 328

Query: 238 KGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDC-LIKAHGDLDVLMPYLHLPVQ 296
                       L   L+  +G        S   +  +  L +    +        L  +
Sbjct: 329 ------GALNGLLDDFLARWEGERIAMSLPSLRTETMNEALAQKIARIRK--TGFTLAPE 380

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
           + ++R+   +N+ +   +  + ++ I      + +   F++G P E D+D  A  +L  +
Sbjct: 381 AATERMRAVINKGNREEDLLRAVESIFGNGWSL-LKLYFMIGLPEERDEDVVAIAELAKR 439

Query: 357 I--------------GYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCL-------- 394
                                +  + P+  TP       +       R   L        
Sbjct: 440 CLAAARRVLPKGEGSPAIHLGASTFVPKPFTP-FQWEPMIPPEE-TRRRQALVTAALGGR 497

Query: 395 -----------QKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQ 436
                      ++   E  ++  D  VG    VL     +   +L G + W  
Sbjct: 498 NGAIQFKPHDSRQSSIEGALALGDRRVGT--AVL--AAYRRGQRLDGWTEWFD 546


>gi|307267355|ref|ZP_07548850.1| Radical SAM domain protein [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306917613|gb|EFN47892.1| Radical SAM domain protein [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 349

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 35/249 (14%), Positives = 78/249 (31%), Gaps = 32/249 (12%)

Query: 139 LLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKR--------GVTAFLTIQEGCDKFC 190
           L+E+      +   +       E  S +    +R R         +   +     C   C
Sbjct: 10  LIEKLETHHNIDKEELVTLLALEDPSKIYQAADRVRKKYVGDEVHLRGLIEFSNYCSNTC 69

Query: 191 TFCVVPYTRGIEI-----SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
            +C     RG             +++   +     G+  I L         G+    +  
Sbjct: 70  FYC---GLRGPNRTIKRYRMEPEEILQCVKYGASVGLKTIVLQS-------GEDKYFKIT 119

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
           T   ++  + ++   V L       +D    L KA  D         L +++ +  + + 
Sbjct: 120 TLCKIIEEIKKLDIAVTLSIGELSTKDY-AELKKAGADR------YLLRIETTNKELYQK 172

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           ++   +     + +  +R +  ++   S  ++G PG+T +     +    KI        
Sbjct: 173 LHPGMSYENRVRCLMDLRELDYEVGTGS--LIGLPGQTLEMLAQDLIFFKKIDADMLGIG 230

Query: 366 KYSPRLGTP 374
            + P   TP
Sbjct: 231 PFIPCENTP 239


>gi|261253842|ref|ZP_05946415.1| hypothetical protein VIA_003869 [Vibrio orientalis CIP 102891]
 gi|260937233|gb|EEX93222.1| hypothetical protein VIA_003869 [Vibrio orientalis CIP 102891]
          Length = 314

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 2/88 (2%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +L L +Q+ +++ LK +NR H    Y +I  R R++   I + +  IVG P ET +D  A
Sbjct: 141 WLELGLQTANNQTLKRINRGHDFECYAEITKRARAL--GIKVCTHLIVGLPKETREDNIA 198

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
           TM+ V  +G             G+  + 
Sbjct: 199 TMEQVLAVGTDGIKLHGLHIVEGSTMAK 226


>gi|126179801|ref|YP_001047766.1| radical SAM domain-containing protein [Methanoculleus marisnigri
           JR1]
 gi|125862595|gb|ABN57784.1| Radical SAM N-terminal domain protein [Methanoculleus marisnigri
           JR1]
          Length = 600

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 39/252 (15%), Positives = 77/252 (30%), Gaps = 31/252 (12%)

Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSLS 208
           +D  Y +                   V   +    GC   C+FC + + +G  I SRS  
Sbjct: 275 LDRVYELPYTRRAHPSYTEPIPALEPVRFSVVTHRGCFGACSFCALTHHQGRIIQSRSAD 334

Query: 209 QVVDEARKLIDN----------GVCEITLLGQNVNAWR--GKGLDGEKCTF--------- 247
            +V E  ++             G     + G + + W   G   D               
Sbjct: 335 SIVREVERMAKMPEFTGVVQDVGGPTANMYGIHCSRWETAGTCPDRRCIDCPALDRSHKE 394

Query: 248 -SDLLYSLSEIKGLVRLRYTTSHPRD-MSDCLIKAHGD--LDVLMPYLHLPVQSGSDRIL 303
              LL  + E+  + R+   +    D +S    +   +     +  +L +  +  S R+L
Sbjct: 395 QVSLLRRIRELPRVKRVFIASGIRYDLISPDDREYLSEVSTHHVSGHLKVAPEHVSKRVL 454

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISS----DFIVGFPGETDDDFRATMDLVDKIGY 359
            SM +  +   +    +R  +++             + G PG    D     + +   G 
Sbjct: 455 ASMGKP-SREVFDAFRERFEALQEGKKKRQYLVPYLMSGHPGCRIADMVELAEYLRDTGL 513

Query: 360 AQAFSFKYSPRL 371
                  ++P  
Sbjct: 514 YTEQVQDFTPTP 525


>gi|256832706|ref|YP_003161433.1| lipoic acid synthetase [Jonesia denitrificans DSM 20603]
 gi|256686237|gb|ACV09130.1| lipoic acid synthetase [Jonesia denitrificans DSM 20603]
          Length = 339

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/249 (16%), Positives = 87/249 (34%), Gaps = 23/249 (9%)

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQ-EGCDKFCTFCVVPYTRGIEISRSLSQVVD 212
           ++V ++    +I +   +R+    A   I  + C + C FC +   +  E  R   +   
Sbjct: 43  HTVCEEAGCPNIYECWEDRE----ATFLIGGDQCTRRCDFCQIDTGKPAEFDR--DEPRR 96

Query: 213 EARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
            A  + + G+   T+ G      R    DG    +++ +  +  +     +         
Sbjct: 97  VAESVAELGLKYSTVTGV----ARDDLPDGGAWLYAETVRQIHALNPNTGVEVLIPDFNA 152

Query: 273 MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAIS 332
           + + L + +     ++ +    V     RI K +           ++ R R     +   
Sbjct: 153 IPELLDEVNSSQPEVLAHNVETV----PRIFKQIRPGFRYDRSLSVLTRARDA--GLITK 206

Query: 333 SDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLL 392
           S+ I+G  GET ++    M+ +   G       +Y  R     +     VD  V+ E  +
Sbjct: 207 SNLILGM-GETTEEIVEAMEELHAAGCDLLTITQYL-RP----TKRHHPVDRWVRPEEFV 260

Query: 393 CLQKKLREQ 401
            L ++    
Sbjct: 261 ELSQEAERI 269


>gi|33241101|ref|NP_876043.1| Fe-S oxidoreductase [Prochlorococcus marinus subsp. marinus str.
           CCMP1375]
 gi|33238631|gb|AAQ00696.1| SAM radical enzyme [Prochlorococcus marinus subsp. marinus str.
           CCMP1375]
          Length = 541

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/182 (16%), Positives = 59/182 (32%), Gaps = 12/182 (6%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISR-SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK 238
           +  + GC   C +CV     G ++    + +V+ E R+L   GV  I          +  
Sbjct: 257 VQTKRGCPHNCCYCVYTVVEGKQVRVNPVEEVISEIRQLYKLGVRNIWFTDAQFIPAKRY 316

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
             D +     +LL ++ + K             ++   L K   +    M Y  + + SG
Sbjct: 317 IEDAK-----ELLKAIKKEKMDGIRWAAYIRADNLDAELAKLMVETG--MSYFEIGITSG 369

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPG--ETDDDFRATMDLVDK 356
           S  +++ M   +      +    I                F    E  +  R T+    +
Sbjct: 370 SQELVRKMRMGYNLRTVIENC--ILLANAGFKDHVSVNYSFNVIDERPETIRQTIAYHRE 427

Query: 357 IG 358
           + 
Sbjct: 428 LE 429


>gi|15643646|ref|NP_228692.1| methyltransferase, putative [Thermotoga maritima MSB8]
 gi|4981419|gb|AAD35965.1|AE001754_2 methyltransferase, putative [Thermotoga maritima MSB8]
          Length = 447

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 43/252 (17%), Positives = 85/252 (33%), Gaps = 23/252 (9%)

Query: 126 VVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQE- 184
           +V        LP  LE   F  + +  D+          + D  Y     +   + I   
Sbjct: 158 IVYEKGDLVFLPRFLETLGFPSKEIPADW--------FEVFDPMYELYNRIGYLVFITTL 209

Query: 185 GCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLID-NGVCEITLLGQNVNAWRGKGLDGE 243
           GC   C++C V         R+  +VV+   K ++   V ++      + A         
Sbjct: 210 GCPFRCSYCAVHRLWNGLRVRTPERVVETIEKYLNIFKVEDVVFFDDAILAS-------- 261

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTT-SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
              F DLL  + E +  VR       H R + +       + +     + L  ++     
Sbjct: 262 -GRFKDLLKLIVEKRWPVRFHLPNGIHARLLDEETAFLLKEAN--FRTIKLGYETSGRLQ 318

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
            ++  + +     R      ++   +  +S+  +V  PG+T +D    + +    G    
Sbjct: 319 RETGGKVYDEDLVRAARILRKAGFTEKEVSAYIMVNMPGQTKEDVLNAIKVCLSEGIG-I 377

Query: 363 FSFKYSPRLGTP 374
              +Y+P  GT 
Sbjct: 378 SINEYTPIPGTK 389


>gi|145298290|ref|YP_001141131.1| hypothetical protein ASA_1276 [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142851062|gb|ABO89383.1| conserved hypothetical protein [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 803

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 69/381 (18%), Positives = 123/381 (32%), Gaps = 69/381 (18%)

Query: 115 EEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNR- 172
           +E        + ++  +T       L +A   + + V+      +  E   +    Y R 
Sbjct: 295 KEDKVLYAHASRILHHETNPGCARALSQAHGDRIIWVNPPAFPLETDEMDGVFGLPYQRV 354

Query: 173 ------KRGVTAF------LTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLID 219
                 K  + A+      + I  GC   C+FC +    G  I SRS   ++ E  ++ D
Sbjct: 355 PHPAYGKEKIPAYEMIKTSVNIMRGCFGGCSFCSITEHEGRLIQSRSEESIIKEIEEIRD 414

Query: 220 N--GVCEIT--LLGQNVNAWR----------------------GKGLDGEKCTFSDLLYS 253
              G   +   L G   N ++                         +D +     +L   
Sbjct: 415 KVPGFTGVISDLGGPTTNMYKLRCKSPRAEQTCRRASCVWPTICPHMDTDHTPTINLYRK 474

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV--LMPYLHLPVQSGSDRILKSMNRRHT 311
             ++KG+ ++   +    D++    +   +L    +  YL +  +   +  L  M +   
Sbjct: 475 ARDVKGIKKILIASGVRYDIAVEDPRYIKELAKYHVGGYLKIAPEHTEEGPLSKMMKPGM 534

Query: 312 AYEY--RQIIDRI-RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK--IGYAQAFSFK 366
              Y  +++ D+  +       +   FI   PG TD+D       V        Q  +F 
Sbjct: 535 GSYYSFKELFDKYSKEAGKQQYLIPYFISAHPGTTDEDMVNMALWVKTNNFKLDQVQNFY 594

Query: 367 YSPRLGTPGSNML-------EQVDEN------VKAERLLCLQKKLREQQVSFNDACVGQI 413
            SP      + M         +V         VK ER   L K L           +   
Sbjct: 595 PSPLAN--ATTMYYTEKNPLNKVSRQGGDVFVVKGERRRRLHKALLRYHDPAGWPMI--- 649

Query: 414 IEVLIEKHGKEKGKLVGRSPW 434
            EVL+E     KG L+G  P 
Sbjct: 650 REVLLE---MGKGHLIGNGPN 667


>gi|218440952|ref|YP_002379281.1| radical SAM protein [Cyanothece sp. PCC 7424]
 gi|218173680|gb|ACK72413.1| Radical SAM domain protein [Cyanothece sp. PCC 7424]
          Length = 538

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 56/268 (20%), Positives = 104/268 (38%), Gaps = 25/268 (9%)

Query: 177 TAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR 236
              + +   C + C FC+  Y      + SL   +  A +        I LLG +V    
Sbjct: 223 IYMVEVVRSCPEMCRFCLASYLTLPFRTASLEGSLIPAIEKGLKVTDRIGLLGASVTQH- 281

Query: 237 GKGLDGEKCTFSDLLYSLSEIK-GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPV 295
                     F  LL  L++     VRL   +     +++ L       D     + + +
Sbjct: 282 --------PEFETLLDYLAQPDYDQVRLSIASVRTNTVTEKLASILAKRDT--RSITIAI 331

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI-AISSDFIVGFPGETDDDFRATMDLV 354
           +SGS++I K +N++ +  E  Q    I +    + AI    +VG P E + D   T+ ++
Sbjct: 332 ESGSEKIRKIINKKLSNEEIIQAA--INAKAGGLKAIKFYGMVGIPAEEETDIEQTVKIL 389

Query: 355 DKIGYA------QAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFN-D 407
            ++               + P+  TP       V+   K  RL  L+KKLR Q + F  +
Sbjct: 390 QEVKKTASGLRLTLGCSTFVPKSHTPFQWFG--VNPEAKK-RLKTLEKKLRSQGIDFRPE 446

Query: 408 ACVGQIIEVLIEKHGKEKGKLVGRSPWL 435
           +    +I+ LI +  +   +++  +   
Sbjct: 447 SYNWSVIQALISRGDRRLAQVLELTREY 474


>gi|170758735|ref|YP_001787765.1| radical SAM domain-containing protein [Clostridium botulinum A3
           str. Loch Maree]
 gi|169405724|gb|ACA54135.1| radical SAM domain protein [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 363

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 39/212 (18%), Positives = 73/212 (34%), Gaps = 15/212 (7%)

Query: 176 VTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVD--EARKLIDNGVCEI-TLLGQNV 232
           +      QEGC   C FC      G        ++VD    R+ I+  +  I        
Sbjct: 7   IIPIFVAQEGCPHNCVFCNQHKITGE-----KGEIVDENYIRETIEAYIKTIDRENSTLE 61

Query: 233 NAWRGKGLDGEKCTFSDLLYSLSEI---KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMP 289
            ++ G    G        L  +++    KG +   + ++ P  +   ++           
Sbjct: 62  ISFFGGTFTGIPIERQKSLLKVAKEYKDKGQIDYIHMSTRPDYIDREILDNLKKYS--AD 119

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
            + L VQS  D +L    R H+  E  +    I+       +    ++G PG+T      
Sbjct: 120 IIELGVQSLDDEVLLKSGRGHSVEEVHRASKLIKEY--GFTLGHQIMLGLPGDTFKKDIE 177

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           T+    ++    A  +       TP  +ML++
Sbjct: 178 TVAKSLEMEPDIARIYPALVIKDTPMEDMLKK 209


>gi|85858556|ref|YP_460758.1| Fe-S oxidoreductase [Syntrophus aciditrophicus SB]
 gi|85721647|gb|ABC76590.1| Fe-S oxidoreductase [Syntrophus aciditrophicus SB]
          Length = 828

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 50/242 (20%), Positives = 92/242 (38%), Gaps = 25/242 (10%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKL-IDNGVCEITLLGQNVNAWRGK 238
           L I  GC + C FC           R+L  +   A +     G  EI+LL  +       
Sbjct: 240 LEIARGCTRGCRFCQAGMVWRPVRERNLRTLEKSAEQQLCSTGYDEISLLSLSS------ 293

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPR--DMSDCLIKAHGDLDVLMPYLHLPVQ 296
              G+     DLL  L +     R+  +    R   ++  LI+    +        L  +
Sbjct: 294 ---GDYSRIEDLLIRLMDRYYSRRIALSLPSLRTETLTRTLIENIRKVRK--TSFTLAPE 348

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
           +G+ R+   +N+ +T         ++ +     A+   F++G P ET+ D    ++L  K
Sbjct: 349 AGTQRLRNVINKGNTEENLLAATAQVFAAGWK-AVKLYFMIGLPTETETDLDGIIELGHK 407

Query: 357 I-GYAQ------AFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKL--REQQVSFND 407
           +  Y++           + P+  TP      Q+D    AE+ L ++  +  R   + F+D
Sbjct: 408 VSRYSRNRGQVTLSLSTFVPKPHTP-FQWHRQIDMEEIAEKQLYIRNSISSRNISIKFHD 466

Query: 408 AC 409
             
Sbjct: 467 RR 468


>gi|300937510|ref|ZP_07152332.1| radical SAM domain protein [Escherichia coli MS 21-1]
 gi|300457449|gb|EFK20942.1| radical SAM domain protein [Escherichia coli MS 21-1]
          Length = 739

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 48/297 (16%), Positives = 98/297 (32%), Gaps = 58/297 (19%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDN--GVCEIT--LLGQNVNA 234
           + I  GC   C+FC +    G  I SRS   ++++   + D   G   +   L G   N 
Sbjct: 380 VNIMRGCFGGCSFCSITEHEGRIIQSRSEDSIINDIEAIRDTVPGFTGVISDLGGPTANM 439

Query: 235 WR----------------------GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
           +                          +D       +L     E+KG+ ++   +    D
Sbjct: 440 YMLRCKSPRAEQTCRRLSCVYPDICPHMDTNHEPTINLYRRARELKGIKKILIASGVRYD 499

Query: 273 MSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRRH--TAYEYRQIIDRI-RSVRP 327
           ++    +   +L    +  YL +  +   +  L  M +    +   ++++ D   +    
Sbjct: 500 IAVEDPRYIKELATHHVGGYLKIAPEHTEEGPLSKMMKPGMGSYDRFKELFDTYSKQAGK 559

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGY--AQAFSFKYSPRLGT---------PGS 376
           +  +   FI   PG  D+D       + K  +   Q  +F  SP   +         P +
Sbjct: 560 EQYLIPYFISAHPGTRDEDMVNLALWLKKHRFRLDQVQNFYPSPLANSTTMYYTGKNPLA 619

Query: 377 NMLEQ-----VDENVKAERL-LCLQK--------KLREQQVSF-NDACVGQIIEVLI 418
            +  +     V +  K  RL   L +         +R+   +      +G   + L+
Sbjct: 620 KIGYKSEDVFVPKGDKQRRLHKALLRYHDPANWPLIRQALEAMGKKHLIGSRRDCLV 676


>gi|163752388|ref|ZP_02159582.1| lipoyl synthase [Shewanella benthica KT99]
 gi|161327725|gb|EDP98913.1| lipoyl synthase [Shewanella benthica KT99]
          Length = 321

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/184 (14%), Positives = 58/184 (31%), Gaps = 14/184 (7%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V    G  +     + V  A+ + D  +  + +   +    R    DG   
Sbjct: 94  CTRRCPFCDV--AHGRPLKPDAEEPVKLAQTIRDMKLKYVVITSVD----RDDLRDGGAQ 147

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLD--VLMPYLHLPVQSGSDRIL 303
            F+D +  +  +   +++       R   D  ++        V    L            
Sbjct: 148 HFADCIREIRLLNPDIKIETLVPDFRGRIDAALEILATEPPDVFNHNLETAPMHY----- 202

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           + +           ++ + +   P I   S  ++G  GET+++    +  +         
Sbjct: 203 RKVRPGANYQWSLDLLKKFKERHPHIPTKSGLMMGL-GETNEEIAQVLRDLRAHNVEMLT 261

Query: 364 SFKY 367
             +Y
Sbjct: 262 LGQY 265


>gi|156839367|ref|XP_001643375.1| hypothetical protein Kpol_479p5 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156113983|gb|EDO15517.1| hypothetical protein Kpol_479p5 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 239

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/215 (18%), Positives = 84/215 (39%), Gaps = 14/215 (6%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V   R       L   ++ A  +   G+  + L   +    R   +DG   
Sbjct: 7   CTRGCRFCSVKTNRTPAKPDPLE-PMNTAEAISRWGLGYVVLTTVD----RDDLIDGGAK 61

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
             ++ +  + E   +  +   +   R     ++    +  + + Y H  +++  +     
Sbjct: 62  HLAETVRLIKEKSPVTFVETLSGDFRG-DLEMVDIMANSGLDV-YAH-NLETVEELTPHV 118

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
            +RR T  +   +++R + V PD+   +  ++G  GETDD    T+  + +I        
Sbjct: 119 RDRRATYRQSLNVLERAKKVSPDVLTKTSIMLGL-GETDDQVIQTLKDLREINCDIVTFG 177

Query: 366 KYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLRE 400
           +Y  R     +    +V E V+ E+    ++K  E
Sbjct: 178 QYM-RP----TRRHMKVVEYVRPEKFNYWKEKALE 207


>gi|238785633|ref|ZP_04629611.1| Oxygen-independent coproporphyrinogen III oxidase [Yersinia
           bercovieri ATCC 43970]
 gi|238713468|gb|EEQ05502.1| Oxygen-independent coproporphyrinogen III oxidase [Yersinia
           bercovieri ATCC 43970]
          Length = 462

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/247 (14%), Positives = 84/247 (34%), Gaps = 18/247 (7%)

Query: 173 KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS-------QVVDEARKLIDNGVCEI 225
           +R ++ ++ I   C K C FC        +  ++         ++   A       V ++
Sbjct: 55  QRPLSLYVHIPF-CHKLCYFCGCNKLVTRQQHKADEYLAVLEKEIRQRAALFAGRQVSQM 113

Query: 226 TLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLD 285
              G          +        +    L + +  + +      PR++   ++       
Sbjct: 114 HWGGGTPTYLNKTQITHLMNLLRENFDFLPDAEQSIEV-----DPREIELDVLDHLRAEG 168

Query: 286 VLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDD 345
                L + VQ  +  + + +NR         +I R +++  + + + D I G P +T +
Sbjct: 169 --FNRLSMGVQDFNKEVQRLVNREQDEDFIFALIARAKALGFN-STNIDLIYGLPKQTPE 225

Query: 346 DFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVS 404
            F  T+  V ++   +   F Y+       +   ++  D     +RL  LQ  +     S
Sbjct: 226 SFAFTLKRVAELNPDRLSVFNYAHLPSLFAAQRKIKDADLPSAEQRLDILQHTISFLTES 285

Query: 405 FNDACVG 411
                +G
Sbjct: 286 GYQ-FIG 291


>gi|42525191|ref|NP_970571.1| oxygen-independent coproporphyrinogen III oxidase, putative
           [Bdellovibrio bacteriovorus HD100]
 gi|39577402|emb|CAE81225.1| oxygen-independent coproporphyrinogen III oxidase, putative
           [Bdellovibrio bacteriovorus HD100]
          Length = 390

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 41/201 (20%), Positives = 76/201 (37%), Gaps = 19/201 (9%)

Query: 186 CDKFCTFCVVPYTRGIEISR--SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
           C + CT+C        E S+     Q V+   K I       T    +   + G      
Sbjct: 12  CIQRCTYC---DFATYEQSKILPPDQYVELLFKEIRQKHRYYTPQSLDTIYFGGGTPSLI 68

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLH-------LPVQ 296
                     ++ IK L R  +TT    +++  +  A    + L  YL        +  Q
Sbjct: 69  PANL-----IVAIIKELGRYGFTTRPDTEITIEINPATVSKEKLKTYLDNGINRFSVGAQ 123

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
           +  DR+LK ++R H+A +  + +D +R+    +  S D +   P +T +  R  +++  +
Sbjct: 124 TFDDRLLKMVHREHSAKQTLETLDLLRA--HGVNFSFDILFALPSQTVEGLRRDVEIAVE 181

Query: 357 IGYAQAFSFKYSPRLGTPGSN 377
            G      +  +   G P S 
Sbjct: 182 QGAKHISPYCLTVPDGHPLSK 202


>gi|323698221|ref|ZP_08110133.1| Protein of unknown function DUF2344 [Desulfovibrio sp. ND132]
 gi|323458153|gb|EGB14018.1| Protein of unknown function DUF2344 [Desulfovibrio desulfuricans
           ND132]
          Length = 848

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 38/242 (15%), Positives = 80/242 (33%), Gaps = 25/242 (10%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGK 238
           L I  GC + C FC           RSL  +       +   G  E ++L  +   + G 
Sbjct: 251 LEIARGCTRGCRFCQAGMIYRPVRERSLDGLDRILTDGLAETGYEETSMLSLSTGDFSGL 310

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
                +         ++       +   +     +S  +++    +        +  ++G
Sbjct: 311 DSLFTRSFDKCAAEQIA-------ISLPSLRVGSLSAPIMERISSIRR--TGATIAPEAG 361

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           S R+   +N+        + +  +        +   F++G P ETD+D  A +DL  K+ 
Sbjct: 362 SQRMRDVINKGVDEAGLLEHVRLLFDNGWQ-GVKLYFMIGLPTETDEDLDAILDLCLKVR 420

Query: 359 ----------YAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLR---EQQVSF 405
                        A    + P+  TP      Q+  +    R+  L+   R      + +
Sbjct: 421 DAAGAHIKRLQVTAAVSPFVPKPHTP-FQWEPQIPLDEIYRRIAHLRNIFRPHKRISIKY 479

Query: 406 ND 407
           ++
Sbjct: 480 HE 481


>gi|71909772|ref|YP_287359.1| radical SAM family protein [Dechloromonas aromatica RCB]
 gi|71849393|gb|AAZ48889.1| Radical SAM [Dechloromonas aromatica RCB]
          Length = 524

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 42/289 (14%), Positives = 91/289 (31%), Gaps = 20/289 (6%)

Query: 92  NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG---PQTYYRLPELLERARFGKR 148
               +    L +VV G     E E+        +++ G            LL   +   +
Sbjct: 92  RRLKQVRPALKIVVGGPEVSREWEDQEIVRLADHLITGWGDVSLPKLCRALLHGPQPLMK 151

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY---TRGIEISR 205
           V+  +     + + L   +   +       ++    GC   C FC+          E   
Sbjct: 152 VIPGEQPTLAEID-LPYAEFSADDLAHRLLYVEASRGCPFKCEFCLSSLDKTAWAFEQ-- 208

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
             +  +     L   G      + +  N            + + L + L  +   + L +
Sbjct: 209 --APFLAALDGLYQRGARNFKFVDRTFNLKIDS-------SLTILQFFLDRLTPDLFLHF 259

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
               P  + + L          +    + +Q+ +  + ++++RR    +  + +  + + 
Sbjct: 260 EVI-PDHLPERLKAMIARFPPGVLQFEVGIQTFNPDVQQAISRRQDNDKTCENLAWLVNH 318

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
                + +D I G PGET   F A  D +  +G  +          GTP
Sbjct: 319 S-HAHLHTDLIFGLPGETLSSFAAGFDRLYALGPHEIQLGVLKRLRGTP 366


>gi|22125074|ref|NP_668497.1| lipoyl synthase [Yersinia pestis KIM 10]
 gi|51595438|ref|YP_069629.1| lipoyl synthase [Yersinia pseudotuberculosis IP 32953]
 gi|108808494|ref|YP_652410.1| lipoyl synthase [Yersinia pestis Antiqua]
 gi|108811247|ref|YP_647014.1| lipoyl synthase [Yersinia pestis Nepal516]
 gi|145599918|ref|YP_001163994.1| lipoyl synthase [Yersinia pestis Pestoides F]
 gi|149365501|ref|ZP_01887536.1| lipoic acid synthetase [Yersinia pestis CA88-4125]
 gi|153949903|ref|YP_001401917.1| lipoyl synthase [Yersinia pseudotuberculosis IP 31758]
 gi|162420328|ref|YP_001606342.1| lipoyl synthase [Yersinia pestis Angola]
 gi|165925372|ref|ZP_02221204.1| lipoic acid synthetase [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165937740|ref|ZP_02226302.1| lipoic acid synthetase [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|166008051|ref|ZP_02228949.1| lipoic acid synthetase [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166212564|ref|ZP_02238599.1| lipoic acid synthetase [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|167422569|ref|ZP_02314322.1| lipoic acid synthetase [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167423697|ref|ZP_02315450.1| lipoic acid synthetase [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|167470781|ref|ZP_02335485.1| lipoic acid synthetase [Yersinia pestis FV-1]
 gi|170025248|ref|YP_001721753.1| lipoyl synthase [Yersinia pseudotuberculosis YPIII]
 gi|186894469|ref|YP_001871581.1| lipoyl synthase [Yersinia pseudotuberculosis PB1/+]
 gi|218929679|ref|YP_002347554.1| lipoyl synthase [Yersinia pestis CO92]
 gi|229838144|ref|ZP_04458303.1| lipoate synthase [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229895935|ref|ZP_04511105.1| lipoate synthase [Yersinia pestis Pestoides A]
 gi|229898745|ref|ZP_04513890.1| lipoate synthase [Yersinia pestis biovar Orientalis str. India 195]
 gi|229901484|ref|ZP_04516606.1| lipoate synthase [Yersinia pestis Nepal516]
 gi|270489669|ref|ZP_06206743.1| lipoyl synthase [Yersinia pestis KIM D27]
 gi|294504403|ref|YP_003568465.1| lipoyl synthase [Yersinia pestis Z176003]
 gi|22001767|sp|Q8ZDH0|LIPA_YERPE RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|81640108|sp|Q66DF5|LIPA_YERPS RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|122980260|sp|Q1CKR6|LIPA_YERPN RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|123245652|sp|Q1C507|LIPA_YERPA RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|166230447|sp|A4TP09|LIPA_YERPP RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|166990686|sp|A7FKY9|LIPA_YERP3 RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|238687324|sp|A9R703|LIPA_YERPG RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|238688392|sp|B1JGB7|LIPA_YERPY RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|238691430|sp|B2K874|LIPA_YERPB RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|21957927|gb|AAM84748.1|AE013720_12 lipoate biosynthesis protein A [Yersinia pestis KIM 10]
 gi|51588720|emb|CAH20331.1| lipoic acid synthetase [Yersinia pseudotuberculosis IP 32953]
 gi|108774895|gb|ABG17414.1| lipoic acid synthetase [Yersinia pestis Nepal516]
 gi|108780407|gb|ABG14465.1| lipoic acid synthetase [Yersinia pestis Antiqua]
 gi|115348290|emb|CAL21221.1| lipoic acid synthetase [Yersinia pestis CO92]
 gi|145211614|gb|ABP41021.1| lipoic acid synthetase [Yersinia pestis Pestoides F]
 gi|149291914|gb|EDM41988.1| lipoic acid synthetase [Yersinia pestis CA88-4125]
 gi|152961398|gb|ABS48859.1| lipoic acid synthetase [Yersinia pseudotuberculosis IP 31758]
 gi|162353143|gb|ABX87091.1| lipoic acid synthetase [Yersinia pestis Angola]
 gi|165914490|gb|EDR33105.1| lipoic acid synthetase [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|165922979|gb|EDR40130.1| lipoic acid synthetase [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165992433|gb|EDR44734.1| lipoic acid synthetase [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166206495|gb|EDR50975.1| lipoic acid synthetase [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|166958583|gb|EDR55604.1| lipoic acid synthetase [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167057867|gb|EDR67613.1| lipoic acid synthetase [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|169751782|gb|ACA69300.1| lipoic acid synthetase [Yersinia pseudotuberculosis YPIII]
 gi|186697495|gb|ACC88124.1| lipoic acid synthetase [Yersinia pseudotuberculosis PB1/+]
 gi|229681413|gb|EEO77507.1| lipoate synthase [Yersinia pestis Nepal516]
 gi|229688293|gb|EEO80364.1| lipoate synthase [Yersinia pestis biovar Orientalis str. India 195]
 gi|229694510|gb|EEO84557.1| lipoate synthase [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229700858|gb|EEO88887.1| lipoate synthase [Yersinia pestis Pestoides A]
 gi|262362608|gb|ACY59329.1| lipoyl synthase [Yersinia pestis D106004]
 gi|262366389|gb|ACY62946.1| lipoyl synthase [Yersinia pestis D182038]
 gi|270338173|gb|EFA48950.1| lipoyl synthase [Yersinia pestis KIM D27]
 gi|294354862|gb|ADE65203.1| lipoyl synthase [Yersinia pestis Z176003]
 gi|320016199|gb|ADV99770.1| lipoate synthase [Yersinia pestis biovar Medievalis str. Harbin 35]
          Length = 321

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 45/258 (17%), Positives = 88/258 (34%), Gaps = 19/258 (7%)

Query: 118 LRRSPIVNVVVGPQTYYRLPELLERAR-------FGKRVVDTDYSVEDKFERLSIVDGGY 170
           +   P+ NVV   Q   R PE L+           G +       +    E  S  +   
Sbjct: 19  MALIPVKNVVTERQELLRKPEWLKIKLPTDSSRIQGIKAAMRKNGLHSVCEEASCPNLSE 78

Query: 171 NRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQ 230
               G   F+ +   C + C FC V    G  ++   ++    A+ + D G+  + +   
Sbjct: 79  CFNHGTATFMILGAICTRRCPFCDV--AHGRPVTPDANEPEKLAQTIQDMGLRYVVITSV 136

Query: 231 NVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAH-GDLDVLMP 289
           +    R    DG    F+D + ++      +++       R   D  +         +  
Sbjct: 137 D----RDDLRDGGAQHFADCISAIRAKNPTIKIETLVPDFRGRMDRALDILTATPPDVFN 192

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +    V     R+ + +          ++++R +   PDI   S  +VG  GET+ +   
Sbjct: 193 HNLENV----PRVYRQVRPGANYDWSLKLLERFKEAHPDIPTKSGLMVGL-GETNAEIVE 247

Query: 350 TMDLVDKIGYAQAFSFKY 367
            M  + + G       +Y
Sbjct: 248 VMHDLRRHGVTMLTLGQY 265


>gi|332704282|ref|ZP_08424370.1| Radical SAM domain protein [Desulfovibrio africanus str. Walvis
           Bay]
 gi|332554431|gb|EGJ51475.1| Radical SAM domain protein [Desulfovibrio africanus str. Walvis
           Bay]
          Length = 478

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 46/254 (18%), Positives = 82/254 (32%), Gaps = 38/254 (14%)

Query: 134 YRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGG-YNRKRGVTAFLTIQEGCDKFCTF 192
           +  P ++ +   GK +   D   E  +  +   D   Y         + I  GC+K C F
Sbjct: 144 HDCPGVIYKDINGKIIETDD---EPNYIDIPSYDHSLYPNHLDYVPSIEISRGCNKECLF 200

Query: 193 CVVPYTRGIEISR--SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDL 250
           C    T    I R  +   ++ E   L                         +   F   
Sbjct: 201 C----TNNKSIQRQKNTDDIIREIEILKS-------------TYGHEFCAYFQTPHFLLS 243

Query: 251 LYSLSEIKGL--------VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
              L +I G          R + + ++  +    L+ A G        + +  +S S  +
Sbjct: 244 KKELLKIIGYRNRKDRFTWRTQTSVNYLSEEHIKLLYAAG-----ARAIDVGFESASLSM 298

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDF-IVGFPGETDDDFRATMDLVDKIGYAQ 361
           L+ M +  +  EY   +    S+  D+ +     I+ F GET +    T + +       
Sbjct: 299 LQRMEKTKSPTEYLHQMKVALSIAADVGLRLKLNILLFAGETPETLLETANFLKD-NLLS 357

Query: 362 AFSFKYSPRLGTPG 375
             SF   P +  PG
Sbjct: 358 FHSFSAYPVMIYPG 371


>gi|326389509|ref|ZP_08211076.1| Radical SAM domain protein [Thermoanaerobacter ethanolicus JW 200]
 gi|325994514|gb|EGD52939.1| Radical SAM domain protein [Thermoanaerobacter ethanolicus JW 200]
          Length = 354

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/200 (15%), Positives = 70/200 (35%), Gaps = 11/200 (5%)

Query: 185 GCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK 244
           GC   C FC      G +         +  R+ I+  +  +    +   ++ G    G  
Sbjct: 16  GCPFKCVFCNQNSITGQQQ----EITEEYVRQTIETHLKTLPRDAEIEVSFFGGSFTGIP 71

Query: 245 CTFSDLLYSLSEI---KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
               +L   +++     G +     ++ P  +   +++        +  + L VQS  + 
Sbjct: 72  QDMQNLYLGIAKEYLDNGKIDAIRLSTRPDYIDTEILQNLKRYK--VSIIELGVQSMDEE 129

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
           +L    R HT+ +  + ++ IR    D  +    ++G PG+  +    T   + ++    
Sbjct: 130 VLLKSRRGHTSEDVVKAVNLIRQY--DFKLGLQIMIGLPGDNLEKSLNTAYKIVELKPDF 187

Query: 362 AFSFKYSPRLGTPGSNMLEQ 381
              +       T    M ++
Sbjct: 188 VRIYPTLVIKNTYLERMYKE 207


>gi|317479696|ref|ZP_07938819.1| radical SAM superfamily protein [Bacteroides sp. 4_1_36]
 gi|316904149|gb|EFV25980.1| radical SAM superfamily protein [Bacteroides sp. 4_1_36]
          Length = 376

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 47/236 (19%), Positives = 72/236 (30%), Gaps = 26/236 (11%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWR---GKGLD 241
           C   C +C          S          R L       +  L  + +       G    
Sbjct: 11  CKTRCIYC---DFYSTTRS---ELKQQYIRALCTELKTRKGYLKEEPIETIYFGGGTPSQ 64

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPR--DMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
                F  +  ++ E+ G       T      D+++  +     L      + + +Q+  
Sbjct: 65  LAHEDFEQIFRTIKEVYGTEHAEEITLEANPDDLTEEYVSMLRTLP--FNRISMGIQTFD 122

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIA-ISSDFIVGFPGETDDDFRATMDLVDKIG 358
              LK +NRRH A +    I R+R        IS D I G P ETD  +    DL   +G
Sbjct: 123 APTLKLLNRRHNAAQAIAAIHRLRQA--GFRNISIDLIYGLPDETDQRWER--DLQQAVG 178

Query: 359 YAQAFSFKY--SPRLGTPGSNMLE-----QVDENVKAERLLCLQKKLREQQVSFND 407
                   Y  +   GT    ML+     +VDE         L   L        +
Sbjct: 179 LDVEHISAYHLTYEKGTRIYEMLQSHRISEVDEESSLRFFSALMDTLGAAGYEHYE 234


>gi|330959959|gb|EGH60219.1| lipoyl synthase [Pseudomonas syringae pv. maculicola str. ES4326]
          Length = 335

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 34/215 (15%), Positives = 72/215 (33%), Gaps = 12/215 (5%)

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           + +    E  S  + G     G   F+ + + C + C FC V + R   +     +    
Sbjct: 75  HKLHSVCEEASCPNLGECFSGGTATFMIMGDICTRRCPFCDVGHGRPKAL--DADEPKSL 132

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI-KGLVRLRYTTSHPRD 272
           A  + D  +  + +   +    R    DG    F+D +  +  +  G+        +   
Sbjct: 133 AIAIADLRLKYVVITSVD----RDDLRDGGAQHFADCIREIRLLSPGVQLETLVPDYRGR 188

Query: 273 MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAIS 332
           M   L     +   +  +    V     R+ K+            ++ R + + P +   
Sbjct: 189 MDVALEITAAEPPDVFNHNLETV----PRLYKAARPGSDYQWSLTLLQRFKQMVPHVPTK 244

Query: 333 SDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           S  ++G  GETD++    M  + +         +Y
Sbjct: 245 SGLMLGL-GETDEEVIEVMKRMREHDIDMLTLGQY 278


>gi|303243018|ref|ZP_07329471.1| Radical SAM domain protein [Acetivibrio cellulolyticus CD2]
 gi|302589437|gb|EFL59232.1| Radical SAM domain protein [Acetivibrio cellulolyticus CD2]
          Length = 426

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/303 (13%), Positives = 99/303 (32%), Gaps = 29/303 (9%)

Query: 80  VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL 139
             S +G ++           ++ V V G  A     +   +   ++ +      +     
Sbjct: 71  YISHIGIMKEYAEIIKNINKNIKVAVGGVHATVCPHDF--KCEYIDYIARSAEEFYKISN 128

Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
            +         +      +K+  L              A +    GC   C FC      
Sbjct: 129 CDDTSVRYAYRNLPERYTEKYYYLFA---------NKCALIKTSFGCPYNCNFC-----F 174

Query: 200 GIEISR-SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258
             E+SR    ++ D   +L+     E+ ++  +         +GE+          ++I+
Sbjct: 175 CKEVSRYKAREIDDVIAELLQIPQKEVYIVDDDFL------FNGERLLEFSHKIKENKIE 228

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
               L Y  +     ++ +I+      V +  + + +++ +   L   N++    +  + 
Sbjct: 229 KNF-LVYGRADFIAANEDIIETL--SKVGLNSVIVGIEASTQNELDKFNKKSKLEDNEKA 285

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           +  ++     I   S  I+G   +   DF+   + +  +G        ++P  GTP  + 
Sbjct: 286 VRTLKKY--GIECYSTIILGVDWD-KKDFKNLYNYIKHLGLVFVNLQPFTPMPGTPYFDK 342

Query: 379 LEQ 381
            + 
Sbjct: 343 YKD 345


>gi|293392420|ref|ZP_06636742.1| lipoyl synthase [Serratia odorifera DSM 4582]
 gi|291425074|gb|EFE98281.1| lipoyl synthase [Serratia odorifera DSM 4582]
          Length = 321

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 43/258 (16%), Positives = 88/258 (34%), Gaps = 19/258 (7%)

Query: 118 LRRSPIVNVVVGPQTYYRLPELLERAR-------FGKRVVDTDYSVEDKFERLSIVDGGY 170
           +   P+  VV   Q   R PE ++           G +       +    E  S  +   
Sbjct: 19  MALIPVKTVVTERQELLRKPEWMKIKLPADSTRIQGIKAAMRKNGLHSVCEEASCPNLSE 78

Query: 171 NRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQ 230
               G   F+ +   C + C FC V    G  ++  +++    A+ + D G+  + +   
Sbjct: 79  CFNHGTATFMILGAICTRRCPFCDV--AHGRPVAPDVNEPEKLAQTIADMGLRYVVITSV 136

Query: 231 NVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAH-GDLDVLMP 289
           +    R    DG    F+D + ++      +++       R   D  +         +  
Sbjct: 137 D----RDDLRDGGAQHFADCIAAIRAKSPNIKIETLVPDFRGRMDRALDILTATPPDVFN 192

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +    V     R+ + +          ++++R +   PDI   S  +VG  GET+ +   
Sbjct: 193 HNLENV----PRVYRQVRPGANYEWSLKLLERFKEAHPDIPTKSGLMVGL-GETNAEIVE 247

Query: 350 TMDLVDKIGYAQAFSFKY 367
            M  + + G       +Y
Sbjct: 248 VMRDLRRHGVTMLTLGQY 265


>gi|262278369|ref|ZP_06056154.1| lipoyl synthase [Acinetobacter calcoaceticus RUH2202]
 gi|262258720|gb|EEY77453.1| lipoyl synthase [Acinetobacter calcoaceticus RUH2202]
          Length = 337

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 64/208 (30%), Gaps = 12/208 (5%)

Query: 161 ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN 220
           E  +  +       G   F+ + + C + C FC V    G   +    +    A  + + 
Sbjct: 66  EEAACPNLPECFGGGTATFMIMGDICTRRCPFCDV--AHGRPNALDADEPRHMAETISNL 123

Query: 221 GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKA 280
            +    +   +    R   LDG    F D +     +     L       R   D  ++ 
Sbjct: 124 KLKYAVITSVD----RDDLLDGGAQHFVDCIKEARALSPTTLLEILVPDFRGRMDIALRI 179

Query: 281 HGDLDVLMPYLHLPVQSGSDRIL-KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGF 339
             +     P         +   L K+M           ++   +   PDI      +VG 
Sbjct: 180 MTE----CPPDVFNHNIETVPRLYKAMRPGSDYQHSLTLLKMFKEYCPDIPTKCGLMVGI 235

Query: 340 PGETDDDFRATMDLVDKIGYAQAFSFKY 367
            GET+++  A +D +           +Y
Sbjct: 236 -GETEEEVIALLDDLRAHDVDYVTIGQY 262


>gi|187933466|ref|YP_001887268.1| hypothetical protein CLL_A3082 [Clostridium botulinum B str. Eklund
           17B]
 gi|187721619|gb|ACD22840.1| radical SAM domain protein protein [Clostridium botulinum B str.
           Eklund 17B]
          Length = 682

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 55/378 (14%), Positives = 116/378 (30%), Gaps = 60/378 (15%)

Query: 111 QAEGEEILRRSPIVNVVVGPQTYYRLPE-LLERARFGKRVVDTDYSVEDKFERLSIVDGG 169
            A  E         + ++G     +  +  L +    + +   +  +             
Sbjct: 228 NAYSEAYKLEYYEQDSIIGKTVIQKYGDRYLVQNPPQENLTQEEMDITYNLPYTRTYHPI 287

Query: 170 YNRKRGVTAFLTI------QEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEA-------- 214
           Y    G+ A   +        GC   C+FC + + +G  I +RS + ++DEA        
Sbjct: 288 YETDGGIPAIQEVKFSITSHRGCFGSCSFCALTFHQGRVIQNRSQNSIIDEAKLLTTLPD 347

Query: 215 -----------------RKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257
                            R      V       Q +     K L  +   +  LL  + ++
Sbjct: 348 FKGYIHDIGGPTADFRHRACKKQEVHGTCKTKQCMFPSPCKNLKIDHTEYLSLLKKVRKL 407

Query: 258 KGL----VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
            G+    +R      +     +           +   L +  +    ++L  M +  T  
Sbjct: 408 PGIKKVFIRSGIRYDYLIHDKNDSFFKELCEHHISGQLKVAPEHVVPKVLNQMGKP-TRE 466

Query: 314 EYRQIIDRIRSVRPDIA----ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369
            Y + +D+  ++   +     +    +   PG   +        V ++GY       + P
Sbjct: 467 VYDRFVDKYFNINKKLNKKQFLVPYLMSSHPGSDLNAAIELAQYVKEMGYTPEQVQDFYP 526

Query: 370 RLGTPGSNML--------------EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIE 415
             G+  + M                +  E  + +R L +Q  + +       A +    E
Sbjct: 527 TPGSLSTTMYYTGFNPLTGEEVYIPKTPEEKEMQRAL-IQFAIPKNHKKVKKALIAAHRE 585

Query: 416 VLIEKHGKEKGKLVGRSP 433
            LI  +GK+   L+G +P
Sbjct: 586 DLI-GNGKD--CLIGFAP 600


>gi|148243277|ref|YP_001228434.1| Fe-S oxidoreductase [Synechococcus sp. RCC307]
 gi|147851587|emb|CAK29081.1| Fe-S oxidoreductase [Synechococcus sp. RCC307]
          Length = 871

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 47/291 (16%), Positives = 94/291 (32%), Gaps = 37/291 (12%)

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           A   +RVV    +    +    +        R     + I+ GC + C FC         
Sbjct: 230 ALGHRRVVRRVATPMPHYAMGLVPHVETVHDRLT---VEIRRGCTRGCRFCQPGMLTRPA 286

Query: 203 ISRSLSQVVDEARK-LIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
                 +VV+     ++  G  + +LL                    +L   L      V
Sbjct: 287 RDVDPEEVVEAVETGMVRTGYSDFSLLS-----LSCSDYLALPAVGVELRNRLQ--DHNV 339

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
            L   +       + +    G        L    ++G+ R+   +N+  T  E    I+ 
Sbjct: 340 SLSLPSQRIDRFDNNIAHILGGTRQ--GGLTFAPEAGTQRMRDIVNKGLTDQELSAGIET 397

Query: 322 -IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK---------YSPRL 371
            +R+    + +   F++G PGETD D     D V+++ +      +         ++P+ 
Sbjct: 398 AMRNGWRKVKLY--FMIGLPGETDADVHGVADTVERLRFEMRDIGRLELNLTISNFTPKP 455

Query: 372 GTPGSNMLEQVDENVKAERLLCLQKKL----------REQQVSFNDACVGQ 412
            TP       V       R   L+++            + ++S  +  +G+
Sbjct: 456 HTPFQ--WHSVSTAEFKRRQGILRQRFAGMRFLKVNYTDVRLSAMEDFIGR 504


>gi|302380760|ref|ZP_07269225.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Finegoldia magna ACS-171-V-Col3]
 gi|302311703|gb|EFK93719.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Finegoldia magna ACS-171-V-Col3]
          Length = 367

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 35/204 (17%), Positives = 64/204 (31%), Gaps = 20/204 (9%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           CD  C +C                  +   +       EIT+   N N        G   
Sbjct: 11  CDYKCNYCDFSTMTKQY---------NRVDEYFRLLQKEITIYK-NPNEKIDTIYIGGGT 60

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY-------LHLPVQSG 298
                   + EI  L+   +     ++ +          + ++ Y       + L VQS 
Sbjct: 61  PNLVDSKYIKEIYNLLNKSF-DLQIKEFTIECNPEFVTKEKIVSYKSIGVDRISLGVQSF 119

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           +D   + + R H   +  +  D I+    +I+I  D I GFP +T +     +  + K+ 
Sbjct: 120 NDEYNRFLGRGHKVTDVLKSFDIIKQYIDNISI--DLIFGFPNQTLESLDNDLKYIRKLT 177

Query: 359 YAQAFSFKYSPRLGTPGSNMLEQV 382
                 +      GT      E +
Sbjct: 178 PNHISWYNMILEPGTKFYKDYEDI 201


>gi|251793190|ref|YP_003007918.1| lipoyl synthase [Aggregatibacter aphrophilus NJ8700]
 gi|247534585|gb|ACS97831.1| lipoic acid synthetase [Aggregatibacter aphrophilus NJ8700]
          Length = 320

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/214 (14%), Positives = 73/214 (34%), Gaps = 10/214 (4%)

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           + +    E  S  +       G   F+ +   C + C FC V    G  ++ +  +    
Sbjct: 61  HGLHSVCEEASCPNLHECFNHGTATFMILGAICTRRCPFCDV--AHGKPLAPNPDEPRQL 118

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
           A  + D  +  + +   +    R    D     F+D +  +  +   +++       R  
Sbjct: 119 AETIQDMKLRYVVITSVD----RDDLPDRGAGHFADCVREIRALNPNIKIEILVPDFRGR 174

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
            +  ++   D     P +         R+ + +          +++   +++ P+I   S
Sbjct: 175 IELALEKLKDNP---PDVFNHNLENVPRLYREIRPGADYQWSLRLLKEFKAMFPNIPTKS 231

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
             +VG  GET+++    M  +   G       +Y
Sbjct: 232 GLMVGL-GETNEEILEVMQDLRDHGVTMLTVGQY 264


>gi|157373115|ref|YP_001481104.1| coproporphyrinogen III oxidase [Serratia proteamaculans 568]
 gi|157324879|gb|ABV43976.1| oxygen-independent coproporphyrinogen III oxidase [Serratia
           proteamaculans 568]
          Length = 457

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 43/247 (17%), Positives = 89/247 (36%), Gaps = 18/247 (7%)

Query: 173 KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNV 232
           +R ++ ++ I   C K C FC         ++R   +  +    L         L     
Sbjct: 50  ERPLSLYVHIPF-CHKLCYFC----GCNKLVTRQTHKADEYLAVLAQEIAQRAPLFA--- 101

Query: 233 NAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL----- 287
               G+   G           +S++  ++R  +      +MS  +     +LDVL     
Sbjct: 102 GRKVGQLHWGGGTPTYLSKSQISKLVAMLRQHFDFLPDLEMSIEVDPREIELDVLDHLRS 161

Query: 288 --MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDD 345
                L + VQ  +  + + +NR         +I R +++  + + + D I G P +T +
Sbjct: 162 EGFNRLSMGVQDFNKEVQRLVNREQDETFIFALIARAKALGFN-STNIDLIYGLPKQTPE 220

Query: 346 DFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVS 404
            F  T+  V ++   +   F Y+       +   ++  D     ++L  LQ+ +     S
Sbjct: 221 SFAYTLQRVAELNPDRLSVFNYAHMPNLFAAQRKIKDADLPSAQQKLDILQQTIASLTES 280

Query: 405 FNDACVG 411
                +G
Sbjct: 281 GYQ-FIG 286


>gi|111221359|ref|YP_712153.1| putative Fe-S oxidoreductase [Frankia alni ACN14a]
 gi|111148891|emb|CAJ60570.1| Putative Fe-S oxidoreductase [Frankia alni ACN14a]
          Length = 722

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 59/340 (17%), Positives = 103/340 (30%), Gaps = 55/340 (16%)

Query: 131 QTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190
           Q      + +        + D D     K   + + +  + R       + I  GC + C
Sbjct: 253 QAVTANRDDIPARPTKHTLSDLDSWPYPKAPLVPLAETVHERMS-----VEIFRGCTRGC 307

Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFSD 249
            FC           R++  +       +   G  E+ LL     +       GE  T   
Sbjct: 308 RFCQAGMITRPVRERNIETIGAMVEAGLRATGFNEVGLLS---LSSADHTEIGEIATGLA 364

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
             Y      G V L   ++     +  L             L    + GS+R+ K +N+ 
Sbjct: 365 DRYD----GGNVSLSLPSTRVDAFNVTLANEFSRNGR-RSGLTFAPEGGSERLRKVINKM 419

Query: 310 HTAYEYRQIIDRIRSVRPDIA-ISSDFIVGFPGETDDDFRATMDLVDKI----GYAQAF- 363
            +A +  + +    +       +   F+ G P ETD D     DL  ++      A    
Sbjct: 420 VSAEDLVRTVST--AYAHGWRQVKLYFMCGLPTETDQDVLEIADLAREVIRAGRRASGHR 477

Query: 364 -------SFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLR----------------- 399
                     + P+  TP    + Q    V   RL  L+  +R                 
Sbjct: 478 DIRCTVSIGGFVPKPHTP-FQWVGQASHEVTDARLKLLRDTVRADKEIARAVGFRYHDGR 536

Query: 400 ----EQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWL 435
               E  ++  D  VG +    IE+  +E G+  G +   
Sbjct: 537 PGIIEGLLARGDRRVGAV----IERVWREGGRFDGWNEHF 572


>gi|58040027|ref|YP_191991.1| coproporphyrinogen III oxidase [Gluconobacter oxydans 621H]
 gi|58002441|gb|AAW61335.1| HemN [Gluconobacter oxydans 621H]
          Length = 392

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 42/234 (17%), Positives = 83/234 (35%), Gaps = 33/234 (14%)

Query: 186 CDKFCTFC--------VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG 237
           C   C +C        V+P  R  E+ R   ++  +A +L  +GV             R 
Sbjct: 19  CLAKCPYCDFNSHVREVIPQQRFAEVLRR--ELAHDAARLTRDGVKR---------PLRS 67

Query: 238 KGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL-------MPY 290
               G   +        + I+   RL +      +++        +           +  
Sbjct: 68  IFFGGGTPSLMAPETVAALIEDAHRL-FDAEDDLEITLEANPTSVEAGKFAAFRQAGVNR 126

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
           + L VQS  D  L+ + R H+A +  + ++  R++ P I+   D I   PG++D D+   
Sbjct: 127 VSLGVQSLRDDALRKLGREHSATQAIRALETARTLFPRISF--DLIYARPGQSDADWTDE 184

Query: 351 MDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ----VDENVKAERLLCLQKKLRE 400
           +     +       ++ +   GT    M  +    + +   A RL  L  ++  
Sbjct: 185 LTTALDLVADHLSLYQLTIEPGTKFEAMHRRGELTLPDEDTAARLYDLTGEIAA 238


>gi|52425881|ref|YP_089018.1| lipoyl synthase [Mannheimia succiniciproducens MBEL55E]
 gi|81609427|sp|Q65RH7|LIPA_MANSM RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|52307933|gb|AAU38433.1| LipA protein [Mannheimia succiniciproducens MBEL55E]
          Length = 320

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/207 (14%), Positives = 67/207 (32%), Gaps = 10/207 (4%)

Query: 161 ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN 220
           E  S  +       G   F+ +   C + C FC V    G  +     +    A  + D 
Sbjct: 68  EEASCPNLHECFNHGTATFMILGAICTRRCPFCDV--AHGKPLPPDPEEPKKLAETIQDM 125

Query: 221 GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKA 280
            +  + +   +    R    D     F++ +  + +I    ++       R   +  +  
Sbjct: 126 KLKYVVITSVD----RDDLPDRGAGHFAECIKEIRKINPNTQIEILVPDFRGRIEQALDK 181

Query: 281 HGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFP 340
             D     P +         R+ + +          +++   +++ P I   S  +VG  
Sbjct: 182 LKDNP---PDVFNHNLENVPRLYRDIRPGADYQWSLKLLREFKALFPHIPTKSGLMVGL- 237

Query: 341 GETDDDFRATMDLVDKIGYAQAFSFKY 367
           GET+++    M  +   G       +Y
Sbjct: 238 GETNEEILNVMQDLRNNGVTMLTLGQY 264


>gi|319638239|ref|ZP_07993002.1| coproporphyrinogen III oxidase [Neisseria mucosa C102]
 gi|317400512|gb|EFV81170.1| coproporphyrinogen III oxidase [Neisseria mucosa C102]
          Length = 606

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 35/202 (17%), Positives = 73/202 (36%), Gaps = 14/202 (6%)

Query: 186 CDKFCTFC-VVPYTRGIEIS-----RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
           C   C FC           S     + + ++  EA      G       G       G  
Sbjct: 62  CANHCVFCGFYRNAWKDSQSSVYTDKIIEEMAAEAEVRTGKGKIRAVYFG------GGTP 115

Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
                     L+ +  +   L      T   R     L KA   L+     + + VQ+ +
Sbjct: 116 TALLTEDLVRLIRACYQYLPLAEDCEFTIEGRMSHFDLEKAQACLEAGANRISIGVQTFN 175

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
             I + + R+H+  E  + ++++  +  D  I +D I G P +TD+ ++  +    ++  
Sbjct: 176 TAIRRRLGRKHSGDEAFEYLEKLCEL--DAVIVADLIFGLPNQTDEVWQNDIARAAELPL 233

Query: 360 AQAFSFKYSPRLGTPGSNMLEQ 381
           +   ++ ++     P + M+E+
Sbjct: 234 SGLDTYAFNLYPMLPINRMIEK 255


>gi|313906283|ref|ZP_07839627.1| Radical SAM domain protein [Eubacterium cellulosolvens 6]
 gi|313468903|gb|EFR64261.1| Radical SAM domain protein [Eubacterium cellulosolvens 6]
          Length = 293

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/212 (15%), Positives = 70/212 (33%), Gaps = 16/212 (7%)

Query: 169 GYNRKRGVTAFLTIQEGCDKF-CTFCVVPYTRGIEISRSLSQVVDEARKLIDN--GVCEI 225
             N        L I +GC    C FC +      ++S  +  + ++ ++L ++      I
Sbjct: 8   YRNPYWPTWPLLEITQGCTHNKCKFCTMYKDVPFKMS-PMEWIEEDLKELAESDPNARTI 66

Query: 226 TLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLD 285
            +L  N                +++   +      +   Y      D+ +  +     L 
Sbjct: 67  QILSANPLVLTYD-------KLAEVFEMIHRYLPKMEYIYVAGRVSDLKNKTVDELKKLK 119

Query: 286 VL-MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPG--E 342
            L M  + L V+SG    L  +N+ + A +  +   ++      I     F+ G  G   
Sbjct: 120 ELGMREISLGVESGDGWTLDRINKGYHAEDILEQCHKLEEA--GIDYWMTFLNGVAGRSH 177

Query: 343 TDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
           + +    +  +  +       +   +   GTP
Sbjct: 178 SHEHAVNSAKIFSQCKPMLVGTAGLTLFPGTP 209


>gi|218780415|ref|YP_002431733.1| radical SAM domain protein [Desulfatibacillum alkenivorans AK-01]
 gi|218761799|gb|ACL04265.1| Radical SAM domain protein [Desulfatibacillum alkenivorans AK-01]
          Length = 443

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 48/281 (17%), Positives = 93/281 (33%), Gaps = 26/281 (9%)

Query: 110 AQAEGEEILRRSPIVNVVVGP---QTYYRLPELLERARFG---KRVVD-----TDYSVED 158
           A A  +EI    P+V     P   + + R     +    G   +R+VD     T +S E+
Sbjct: 125 AIALAKEIWPDVPLVLGGTYPTLWEDHARNNSGADEVFTGLADERIVDLANRRTGWSAEN 184

Query: 159 KFERLSIVDGGYNRKR----GVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEA 214
                S+ +  Y         V A +    GC   C +C   +     + R+   V  E 
Sbjct: 185 PVRSGSLDEFPYPALDLEGTPVFAPVLTSRGCPFRCHYCASGFLNPEFLRRNPDAVFAEM 244

Query: 215 RKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
               +  G+ +       +          EK     +   LS             H R++
Sbjct: 245 LYWHERYGLRDYVFYDDAMLVQ------PEKYFLPLMDKILSRGLNWRFHTPNAVHIRNL 298

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAI-S 332
           +    K           + L +++        M+ + T  E+      ++    D +I  
Sbjct: 299 TKRTAKTM--FKAGFKTIRLGLETAVFSKRNGMDAKITRQEFLDGAKNMKEAGFDASIVG 356

Query: 333 SDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
           +  ++G P +  D  + ++ +V + G  +     Y+P   T
Sbjct: 357 AYLLIGLPNQDYDAVKESISIVKEAGI-RPVLTHYTPIPHT 396


>gi|167749835|ref|ZP_02421962.1| hypothetical protein EUBSIR_00803 [Eubacterium siraeum DSM 15702]
 gi|167657147|gb|EDS01277.1| hypothetical protein EUBSIR_00803 [Eubacterium siraeum DSM 15702]
          Length = 480

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 39/200 (19%), Positives = 78/200 (39%), Gaps = 9/200 (4%)

Query: 174 RGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ---VVDEARKLIDNGVCEITLLGQ 230
           R ++ +++I   C   C++C      G    + +     ++ +   +  + V   +L   
Sbjct: 156 RKISLYISIPF-CPSRCSYCSFISASGEGALKLIDDYFGLLLKELDIYADIVKRFSLKVD 214

Query: 231 NVNAWRGKGLDGEKCTFSDLLYSLSE--IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLM 288
            V    G            L+  L E  I  +         P  +++  ++A  +    +
Sbjct: 215 TVYIGGGTPTTLSASQLDSLIEKLGEFDIANIREFTAEAGRPDTITEDKLRALKNGG--V 272

Query: 289 PYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFR 348
             + +  QS +D +L+++ RRHT  +  +  D  R V  D  I+SD I G P ET+  F 
Sbjct: 273 RRISINPQSMNDSVLEAVGRRHTVKQVCEAFDIARKVGFD-CINSDIIAGLPAETERSFE 331

Query: 349 ATMDLVDKIGYAQAFSFKYS 368
            ++  + K+          S
Sbjct: 332 DSLQQLCKLSPENITVHTLS 351


>gi|148825693|ref|YP_001290446.1| lipoyl synthase [Haemophilus influenzae PittEE]
 gi|166230419|sp|A5UBB2|LIPA_HAEIE RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|148715853|gb|ABQ98063.1| lipoyl synthase [Haemophilus influenzae PittEE]
 gi|309972840|gb|ADO96041.1| Lipoate biosynthesis protein A [Haemophilus influenzae R2846]
          Length = 320

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/214 (15%), Positives = 71/214 (33%), Gaps = 10/214 (4%)

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           + +    E  S  +       G   F+ +   C + C FC V    G  +     +    
Sbjct: 61  HGLHSVCEEASCPNLHECFNHGTATFMILGAICTRRCPFCDV--AHGKPLPPDPEEPQKL 118

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
           A  + D  +  + +   +    R    D     FS+ + ++ E+   +++       R  
Sbjct: 119 AETIQDMKLKYVVITSVD----RDDLPDRGAGHFSECVKAVRELNPNIKIEILVPDFRGR 174

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
               ++   D     P +         R+ K +          +++   + + P+I   S
Sbjct: 175 VTQALEKLKDNP---PDVFNHNLENVPRLYKEIRPGADYGWSLKLLREFKEMFPNIPTKS 231

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
             +VG  GET+++    M  +   G       +Y
Sbjct: 232 GLMVGL-GETNEEILQVMQDLRDNGVTMLTLGQY 264


>gi|301062247|ref|ZP_07202924.1| radical SAM domain protein [delta proteobacterium NaphS2]
 gi|300443679|gb|EFK07767.1| radical SAM domain protein [delta proteobacterium NaphS2]
          Length = 449

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 45/327 (13%), Positives = 103/327 (31%), Gaps = 39/327 (11%)

Query: 73  REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT 132
            +   ++               ++   +  +V+ G        E++        +VG   
Sbjct: 68  IDNTDQRDQKSFVAGYQRIAHSVRNHTEATLVLGGSGFTLFPREMMEVLGADYGIVG--E 125

Query: 133 YYRLPELLERARFGKRVVDTDYSVEDKF--ERLSIVDGGYNRKRGVTAF----------- 179
             RL +LL+       V      V  K   E    + G + RK  + +            
Sbjct: 126 GERLADLLKAMAEKTPVAGIPGVVTRKGSQEIPPPLAGPFGRKHLMNSPHLPYYLEHGGM 185

Query: 180 --LTIQEGCDKFCTFCVVPYTRG-IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR 236
             L  + GC   C +C  P+  G             +A +L   G     +     N+  
Sbjct: 186 LNLQTKRGCPFNCIYCTYPHIEGKKLRLIEPEAAAQDALQLQAAGAEYFYITDSVFNSHT 245

Query: 237 GKGLDGEKCTFSDLLYSLSE--IKGLVRLRYTTSHPRDMSDC-LIKAHGDLDVLMPYLHL 293
              +            +++E  I+  V++ +              +        + +   
Sbjct: 246 AHSM------------AVAEAFIEAGVKIPWGAFFAPVAPPEGYFELMARAG--LTHAEF 291

Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
             +S  D +LK  ++   A +  +      ++   + +S   ++G PGE ++    T+  
Sbjct: 292 GTESLCDAVLKRYSKPFCATDVFKAHKA--ALESGLHVSHFLLLGGPGENENSIEETLTG 349

Query: 354 VDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           +D  G  +   F ++     P +++ +
Sbjct: 350 LD--GLPRCVFFFFTALRIYPHTDLYD 374


>gi|255659273|ref|ZP_05404682.1| radical SAM domain protein [Mitsuokella multacida DSM 20544]
 gi|260848730|gb|EEX68737.1| radical SAM domain protein [Mitsuokella multacida DSM 20544]
          Length = 881

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 52/277 (18%), Positives = 96/277 (34%), Gaps = 36/277 (12%)

Query: 147 KRVV-DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           KRV+ D D ++  +   +  +D  +NR       L +  GC + C FC           R
Sbjct: 234 KRVIRDMDDAISVEHPIVPYMDIVHNR-----IMLELFRGCSRGCRFCQAGICYRPARER 288

Query: 206 SLSQVVDEARKLIDN-GVCEITLLGQNVN--AWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +   +   AR L+D  G  E++L   +    +  G+ +D     F D           V 
Sbjct: 289 TEENLRKMARGLVDATGYDEMSLTSLSSADYSCLGRLVDDLMADFRDEK---------VS 339

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII-DR 321
               +      S  L      +      L    ++G+ R+   +N+  T     +     
Sbjct: 340 FSLPSLRIDSFSIDLAHKMQQVRK--SGLTFAPEAGTQRLRDVINKGVTEENLMKACGAA 397

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI------------GYAQAFSFKYSP 369
            R     + +   F++G P ETD+D     +L  K+                     + P
Sbjct: 398 FRQGWKQVKLY--FMMGLPTETDEDVIGIAELAKKVVDLYTKIKGKRGCKVTISVACFVP 455

Query: 370 RLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFN 406
           +  TP      Q+       R   L++ + ++ ++FN
Sbjct: 456 KPYTP-FQWFGQLPIEEFQRRQQLLKEHITDRAITFN 491


>gi|45440945|ref|NP_992484.1| lipoyl synthase [Yersinia pestis biovar Microtus str. 91001]
 gi|167399067|ref|ZP_02304591.1| lipoic acid synthetase [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|45435804|gb|AAS61361.1| lipoic acid synthetase [Yersinia pestis biovar Microtus str. 91001]
 gi|167051571|gb|EDR62979.1| lipoic acid synthetase [Yersinia pestis biovar Antiqua str.
           UG05-0454]
          Length = 315

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 45/258 (17%), Positives = 88/258 (34%), Gaps = 19/258 (7%)

Query: 118 LRRSPIVNVVVGPQTYYRLPELLERAR-------FGKRVVDTDYSVEDKFERLSIVDGGY 170
           +   P+ NVV   Q   R PE L+           G +       +    E  S  +   
Sbjct: 13  MALIPVKNVVTERQELLRKPEWLKIKLPTDSSRIQGIKAAMRKNGLHSVCEEASCPNLSE 72

Query: 171 NRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQ 230
               G   F+ +   C + C FC V    G  ++   ++    A+ + D G+  + +   
Sbjct: 73  CFNHGTATFMILGAICTRRCPFCDV--AHGRPVTPDANEPEKLAQTIQDMGLRYVVITSV 130

Query: 231 NVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAH-GDLDVLMP 289
           +    R    DG    F+D + ++      +++       R   D  +         +  
Sbjct: 131 D----RDDLRDGGAQHFADCISAIRAKNPTIKIETLVPDFRGRMDRALDILTATPPDVFN 186

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +    V     R+ + +          ++++R +   PDI   S  +VG  GET+ +   
Sbjct: 187 HNLENV----PRVYRQVRPGANYDWSLKLLERFKEAHPDIPTKSGLMVGL-GETNAEIVE 241

Query: 350 TMDLVDKIGYAQAFSFKY 367
            M  + + G       +Y
Sbjct: 242 VMHDLRRHGVTMLTLGQY 259


>gi|51245705|ref|YP_065589.1| methyltransferase [Desulfotalea psychrophila LSv54]
 gi|50876742|emb|CAG36582.1| related to methyltransferase [Desulfotalea psychrophila LSv54]
          Length = 455

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 45/289 (15%), Positives = 87/289 (30%), Gaps = 20/289 (6%)

Query: 92  NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLP---ELLERARFGKR 148
              I+      +V+ G       + +L        VVG           E+ ++    K+
Sbjct: 98  AKLIRRLQKTFIVIGGPAVSIIPQLLLDLLEADYAVVGEGEEVMTWLAGEIGKKQPPSKK 157

Query: 149 VVDTDYSVEDKFE-RLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG-IEISRS 206
           ++      E     R       Y  + G    +  + GC   C++C  P   G       
Sbjct: 158 ILKFSAIEELIPCSRFMPHIAEYYTRHGGMLNVQTKRGCPYGCSYCSYPTIEGKKIRHYQ 217

Query: 207 LSQVVDEARKLI-DNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
             QVV+E +KLI D G   I       N       D +          + +   +    +
Sbjct: 218 PEQVVEEVKKLIRDFGGRYIFFTDSVFN-------DPDDRYLEIAEELIRQEVSIPWCAF 270

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
                   S+  +     L        L   + +D  L  + +  +  +       I + 
Sbjct: 271 FRPQGIGRSEIRLLKRAGLAA----AELGTDAATDETLAGIKKGFSFKDVLAAHKIITA- 325

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP-RLGT 373
             D++ +   + G P E        +  ++ +  +  F+F       GT
Sbjct: 326 -EDVSCAHFIMFGGPEENSSTLARGLANIELLKKSVVFAFIGIRILPGT 373


>gi|166030856|ref|ZP_02233685.1| hypothetical protein DORFOR_00536 [Dorea formicigenerans ATCC
           27755]
 gi|166029438|gb|EDR48195.1| hypothetical protein DORFOR_00536 [Dorea formicigenerans ATCC
           27755]
          Length = 281

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 46/244 (18%), Positives = 89/244 (36%), Gaps = 35/244 (14%)

Query: 177 TAFLTIQEGCD-KFCTFCVVPYTRGIEISRSLSQVVDEARKLI--DNGVCEITLLGQNVN 233
           +A L  + GC    C FC   +T+       L ++  +A+ L+        I LLG+N  
Sbjct: 18  SALLETELGCSWHKCAFCD--FTKDDFYIFPLEEIEKKAKMLVPYAKAKRRIFLLGENP- 74

Query: 234 AWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGD--------LD 285
                        F      +  I G V       H   M   +                
Sbjct: 75  -------------FVMDTGKILAITGYVERYMPWIHEISMYARVDDVLRKDERELLVLRK 121

Query: 286 VLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGE--T 343
             + +LH+ ++SG+ ++LK MN+  T  +  +  +R++     I  S   I G  G+  +
Sbjct: 122 KGICHLHIGIESGNAKVLKQMNKGVTPEQGIEACERLQRA--GITYSVTVIPGLGGKKMS 179

Query: 344 DDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ---VDENVKAERLLCLQKKLRE 400
           ++    T   ++ I   + +         T       Q   V  ++++ R++  +K L  
Sbjct: 180 EEHAEDTAKFLNVIQPERIWMIGLKIWNDTDLYKQYNQGLFVPLDLRS-RMMEAKKILEN 238

Query: 401 QQVS 404
            ++S
Sbjct: 239 LKMS 242


>gi|154151983|ref|YP_001405601.1| radical SAM domain-containing protein [Candidatus Methanoregula
           boonei 6A8]
 gi|154000535|gb|ABS56958.1| Radical SAM N-terminal domain protein [Methanoregula boonei 6A8]
          Length = 640

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 52/302 (17%), Positives = 103/302 (34%), Gaps = 43/302 (14%)

Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSLS 208
           +D  Y +        +          V   +    GC   C+FC + + +G  + SRS +
Sbjct: 275 LDHIYELPFSRRAHPLYKKPVPALEPVQFSVVSHRGCFGSCSFCALTHHQGRIVQSRSAA 334

Query: 209 QVVDEARKLIDN----------GVCEITLLGQNVNAWRGKG-------------LDGEKC 245
            +V E  ++             G     + G     W G G             L     
Sbjct: 335 SIVREVTRMAAMPEFKGIVQDVGGPTANMYGMACERWDGAGACPEKSCSPACQTLRTNHR 394

Query: 246 TFSDLLYSLSEIKGLVR------LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
              ++L  +SE+ G+ +      +RY      D++   ++   +   +  +L +  +  S
Sbjct: 395 PLVEILRKISEVPGVKKVFVGSGIRYDLVLADDLNSRYLETLCE-RHVSGHLKVAPEHIS 453

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS----DFIVGFPGETDDDFRATMDLVD 355
            R+ K+MN+      + +  DR  +++   A        F+ G PG T  D  A  + + 
Sbjct: 454 PRVTKAMNKP-DGSVFERFRDRFTALQQGKAKRQYLVPYFMSGHPGCTISDMVALAEYIR 512

Query: 356 KIGYAQAFSFKYSPRLGTPGSNML----EQV---DENVKAERLLCLQKKLREQQVSFNDA 408
             G        ++P   +  + M     +       +V   R   +Q+ L + +   N  
Sbjct: 513 DRGLYTEQVQDFTPTPMSVSTCMYYTGLDPFTLEPVHVPKGREKKIQRALLQYREPQNRG 572

Query: 409 CV 410
            V
Sbjct: 573 LV 574


>gi|329960898|ref|ZP_08299177.1| uncharacterized radical SAM protein YgiQ [Bacteroides fluxus YIT
           12057]
 gi|328532184|gb|EGF58988.1| uncharacterized radical SAM protein YgiQ [Bacteroides fluxus YIT
           12057]
          Length = 621

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 54/328 (16%), Positives = 102/328 (31%), Gaps = 67/328 (20%)

Query: 108 CVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVD 167
           C+   + E    R      +      Y    +L++A     VV+  Y    + E     D
Sbjct: 242 CLKDKKKEAANFRH-----IEEESNKYAASRILQKAGKQTVVVNPPYPPLTEAELDRSFD 296

Query: 168 GGYNR-------KRGVTAFLTI------QEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDE 213
             Y R        + + A+  I        GC   C FC +   +G   +SRS   ++ E
Sbjct: 297 LPYTRLPHPKYKGKRIPAYDMIKFSVNLHRGCFGGCAFCTISAHQGKFIVSRSKESILKE 356

Query: 214 AR---KLIDNGVCEITLLGQNVNAWRGKGLDGEKCT----------------------FS 248
            +   +L D       L G + N +R KG D   C                         
Sbjct: 357 VKAITELPDFKGYLSDLGGPSANMYRMKGRDEAVCRKCKRPSCIYPKVCPNLNTDHRPLL 416

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLH---------------- 292
           D+ +++  +  + +          +   L+        +                     
Sbjct: 417 DIYHAVDALPDIKKSFIG----SGVRYDLLLHQSKDPNINKSTQEYTRELIARHVSGRLK 472

Query: 293 LPVQSGSDRILKSMNRR--HTAYEYRQIIDRI-RSVRPDIAISSDFIVGFPGETDDDFRA 349
           +  +  SD +L  M +   +   E+++I DRI R       +   FI   PG  ++D   
Sbjct: 473 VAPEHTSDNVLNIMRKPSFNQFGEFKKIFDRINREEGLRQQLIPYFISSHPGCKEEDMAE 532

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
              +  ++ +       ++P   T  + 
Sbjct: 533 LAVITKRLDFHLEQVQDFTPTPMTVATE 560


>gi|268322969|emb|CBH36557.1| conserved hypothetical protein, radical SAM superfamily [uncultured
           archaeon]
          Length = 382

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 56/320 (17%), Positives = 105/320 (32%), Gaps = 37/320 (11%)

Query: 79  KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTY---YR 135
               FL  + N+         ++ VV  G  A     EILR+S +  V+ G         
Sbjct: 57  MEDCFLSELYNIAQIVKGYDENIHVVTGGVSATTRDLEILRKSVVDFVIRGEGETPLLTL 116

Query: 136 LPELLERARFGK----------RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAF------ 179
              L++   F K          R+V TD       E L   D        + A       
Sbjct: 117 SNALIQNEDFEKIRGISFMKDDRIVQTDNQSFIDLETLPFPDRDSYPLSKLYALNGGIDL 176

Query: 180 LTIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK 238
           +    GC   C+FC  P     +  +R L  +V+E   L D G   + +   N    +  
Sbjct: 177 VYASRGCPFNCSFCNAPAFWKRQWRARELKDIVEELSILGDLGAKIVHIYDLNFGFNKKW 236

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
             +  K    + +  + + +             D +   +K     D         +++ 
Sbjct: 237 VKNICKGIRREKIDIIWDCE---------LALIDFNMSFLKTI--YDGNCRGAFCGIEAV 285

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGET----DDDFRATMDLV 354
           S  +L S+N+ + + +  + ++  +     I +   ++ G P +         R    L+
Sbjct: 286 SQSVLDSVNKSYKSQDLVKYLNNAKDA--GIHVDGGYVFGLPEDNLSGMRTMTRLACRLL 343

Query: 355 DKIGYAQAFSFKYSPRLGTP 374
           ++        F + P  GT 
Sbjct: 344 EEDLVETPAPFLFVPFKGTE 363


>gi|222054682|ref|YP_002537044.1| hypothetical protein Geob_1585 [Geobacter sp. FRC-32]
 gi|221563971|gb|ACM19943.1| conserved hypothetical protein [Geobacter sp. FRC-32]
          Length = 319

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/104 (25%), Positives = 42/104 (40%), Gaps = 4/104 (3%)

Query: 276 CLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDF 335
            L+        +   L L +QS  D IL  +NR HT  +Y Q ++R+      + I +  
Sbjct: 137 DLLTDLARTSYVC--LELGLQSMDDSILTQINRGHTLADYLQAVERVSGR--GMDICTHL 192

Query: 336 IVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
           I GFPGE+  DF  T  L+  +        +      T  +   
Sbjct: 193 IHGFPGESSADFIRTAQLISSLPVNSLKIHQLHAVKDTRLAEWY 236


>gi|110643252|ref|YP_670982.1| hypothetical protein ECP_3098 [Escherichia coli 536]
 gi|110344844|gb|ABG71081.1| hypothetical protein YgiQ [Escherichia coli 536]
          Length = 739

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 48/297 (16%), Positives = 98/297 (32%), Gaps = 58/297 (19%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDN--GVCEIT--LLGQNVNA 234
           + I  GC   C+FC +    G  I SRS   +++E   + D   G   +   L G   N 
Sbjct: 380 VNIMRGCFGGCSFCSITEHEGRIIQSRSEDSIINEIEAIRDTVPGFTGVISDLGGPTANM 439

Query: 235 WR----------------------GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
           +                          +D       +L     ++KG+ ++   +    D
Sbjct: 440 YMLRCKSPRAEQTCRRLSCVYPDICPHMDTNHEPTINLYRRARDLKGIKKILIASGVRYD 499

Query: 273 MSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRRH--TAYEYRQIIDRI-RSVRP 327
           ++    +   +L    +  YL +  +   +  L  M +    +   ++++ D   +    
Sbjct: 500 IAVEDPRYIKELATHHVGGYLKIAPEHTEEGPLSKMMKPGMGSYDRFKELFDTYSKQAGK 559

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGY--AQAFSFKYSPRLGT---------PGS 376
           +  +   FI   PG  D+D       + K  +   Q  +F  SP   +         P +
Sbjct: 560 EQYLIPYFISAHPGTRDEDMVNLALWLKKHRFRLDQVQNFYPSPLANSTTMYYTGKNPLA 619

Query: 377 NMLEQ-----VDENVKAERL-LCLQK--------KLREQQVSF-NDACVGQIIEVLI 418
            +  +     V +  K  RL   L +         +R+   +      +G   + L+
Sbjct: 620 KIDYKSEDVFVPKGDKQRRLHKALLRYHDPANWPLIRQALEAMGKKHLIGSRRDCLV 676


>gi|330873580|gb|EGH07729.1| lipoyl synthase [Pseudomonas syringae pv. morsprunorum str.
           M302280PT]
          Length = 335

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 34/215 (15%), Positives = 72/215 (33%), Gaps = 12/215 (5%)

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           + +    E  S  + G     G   F+ + + C + C FC V + R   +     +    
Sbjct: 75  HKLHSVCEEASCPNLGECFSGGTATFMIMGDICTRRCPFCDVGHGRPKAL--DADEPKSL 132

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI-KGLVRLRYTTSHPRD 272
           A  + D  +  + +   +    R    DG    F+D +  +  +  G+        +   
Sbjct: 133 AIAIADLRLKYVVITSVD----RDDLRDGGAQHFADCIREIRLLSPGVQLETLVPDYRGR 188

Query: 273 MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAIS 332
           M   L     +   +  +    V     R+ K+            ++ R + + P +   
Sbjct: 189 MDVALEITAAEPPDVFNHNLETV----PRLYKAARPGSDYQWSLTLLQRFKQMVPHVPTK 244

Query: 333 SDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           S  ++G  GETD++    M  + +         +Y
Sbjct: 245 SGLMLGL-GETDEEVIEVMKRMREHDIDMLTLGQY 278


>gi|206603387|gb|EDZ39867.1| Cobalamin B12-binding/Radical SAM family protein [Leptospirillum
           sp. Group II '5-way CG']
          Length = 517

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 47/296 (15%), Positives = 103/296 (34%), Gaps = 26/296 (8%)

Query: 129 GPQTYYRLPELLERARFGK--RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGC 186
           GP    R+P ++     G   R ++    ++   + L      +       A +    GC
Sbjct: 137 GPGMISRVPGVVTSQGEGPPPRFIENLDDIQPARDLLRHRRKYFIGVLDPCASIEFARGC 196

Query: 187 DKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
              C+FC      G    +RS  +++++  ++ + G+     +  +V   + K       
Sbjct: 197 PWDCSFCSAWTFYGRSYRTRSPQRILEDLERIREPGI----FIVDDVAFVQEK------- 245

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL-MPYLHLPVQSGSDRILK 304
              ++  ++  +K  +R  Y      D+             L M Y+ L V++     L 
Sbjct: 246 HGYEIGEAV--LKKGIRKEYYLETRGDVLLRNKDLFRFWKKLGMKYMFLGVEAIDAEGLA 303

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
              +R +  +  + ++  RS+   I ++ + I   P    + F +      +I       
Sbjct: 304 LHRKRISLGKNFEALEFARSL--GITVAINLIAD-PSWERERFESIRQWCLEIP-EIVNI 359

Query: 365 FKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQV---SFNDACVGQIIEVL 417
              +P  GT      E      +  RL  +Q  +   ++    F    V +  ++L
Sbjct: 360 SVNTPYPGTESWR-TESRSLQTRDYRLFDIQHAVLPTKMPLEEFYGELV-KTQQIL 413


>gi|257468650|ref|ZP_05632744.1| hypothetical protein FulcA4_04864 [Fusobacterium ulcerans ATCC
           49185]
 gi|317062907|ref|ZP_07927392.1| Fe-S oxidoreductase [Fusobacterium ulcerans ATCC 49185]
 gi|313688583|gb|EFS25418.1| Fe-S oxidoreductase [Fusobacterium ulcerans ATCC 49185]
          Length = 586

 Score = 59.2 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 41/269 (15%), Positives = 78/269 (28%), Gaps = 35/269 (13%)

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           +R +  D    + ++   +        R   A + IQ GC + C FC           RS
Sbjct: 209 RRAIVEDLDKTEFYDDQLVPYINIVHDR---ASVEIQRGCTRGCRFCQAGIVYRPVRERS 265

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR-- 264
                +   K+I            N               +S +   +  +K     R  
Sbjct: 266 FKNNCELIEKMIK-----------NTGYSEISLSSLSSSDYSKIDDLIKGLKNRYENRNL 314

Query: 265 ---YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
                +      S  +                  ++GS R+   +N+     +     + 
Sbjct: 315 GISLPSLRMNPYSVQVADDISGGKR--TGFTFAPEAGSQRLRDIINKGVEEEDVLATAEA 372

Query: 322 -IRSVRPDIAISSDFIVGFPGETDDD----FRATMDLVDKIGYAQ------AFSFKYSPR 370
            IR    ++     F++G P ETD+D    F     ++ +                + P+
Sbjct: 373 AIRGGWENLKFY--FMIGLPFETDEDVAEIFELASKVIKRCRPISKRINVTVSVSNFVPK 430

Query: 371 LGTPGSNMLEQVDENVKAERLLCLQKKLR 399
             TP     EQ+D      +   L+   +
Sbjct: 431 PHTP-FQWSEQMDIEEMKRKHRILKDLFK 458


>gi|297588459|ref|ZP_06947102.1| possible coproporphyrinogen dehydrogenase [Finegoldia magna ATCC
           53516]
 gi|297573832|gb|EFH92553.1| possible coproporphyrinogen dehydrogenase [Finegoldia magna ATCC
           53516]
          Length = 382

 Score = 59.2 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/207 (14%), Positives = 69/207 (33%), Gaps = 12/207 (5%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           CD  C +C                 + +    +     +      +     G   +    
Sbjct: 26  CDYKCNYCDFSTMTKQYQRVDEYFDLLQTEINMYKNPND----KIDTIYIGGGTPNLVNS 81

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLI--KAHGDLDVL-MPYLHLPVQSGSDRI 302
            + +  Y+L  I     ++       + +   +  +   +   + +  + L VQS +D+ 
Sbjct: 82  KYIEKTYNL--IDNCFNIQLK-EFAIECNPEFVTKEKIENYKKIGIDRISLGVQSFNDQY 138

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
            K + R H   +  +  + IR    +I+I  D I GFP +T +     +  ++K+     
Sbjct: 139 NKFLGRGHKVSDVLKSFEIIRDYIDNISI--DLIFGFPNQTLESLDNDLYYIEKLNPNHV 196

Query: 363 FSFKYSPRLGTPGSNMLEQVDENVKAE 389
             +      GT      + ++ N   E
Sbjct: 197 SRYNMILEPGTKFYKEYDDINRNDDKE 223


>gi|145636770|ref|ZP_01792436.1| lipoyl synthase [Haemophilus influenzae PittHH]
 gi|145270068|gb|EDK10005.1| lipoyl synthase [Haemophilus influenzae PittHH]
          Length = 320

 Score = 59.2 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/214 (15%), Positives = 71/214 (33%), Gaps = 10/214 (4%)

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           + +    E  S  +       G   F+ +   C + C FC V    G  +     +    
Sbjct: 61  HGLHSVCEEASCPNLHECFNHGTATFMILGAICTRRCPFCDV--AHGKPLPPDPEEPQKL 118

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
           A  + D  +  + +   +    R    D     FS+ + ++ E+   +++       R  
Sbjct: 119 AETIQDMKLKYVVITSVD----RDDLPDRGAGHFSECVKAVRELNPNIKIEILVPDFRGR 174

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
               ++   D     P +         R+ K +          +++   + + P+I   S
Sbjct: 175 VTQALEKLKDNP---PDVFNHNLENVPRLYKEIRPGADYGWSLKLLREFKEMFPNIPTKS 231

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
             +VG  GET+++    M  +   G       +Y
Sbjct: 232 GLMVGL-GETNEEILQVMQDLRDNGVTMLTLGQY 264


>gi|85813548|emb|CAF33054.1| putative apramycin biosynthetic oxidoreductase 4
           [Streptoalloteichus tenebrarius]
          Length = 457

 Score = 59.2 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/195 (17%), Positives = 69/195 (35%), Gaps = 18/195 (9%)

Query: 185 GCDKFCT-FCVVPYTRGI-EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG 242
           GC   C  +C  P + G    +  + ++V E R+  + G+          +  R + L+ 
Sbjct: 205 GCPYPCRFYCPYPLSEGRKIRTYPVERIVAEFRQCAELGITAAVFRDPVFSFHRDRTLE- 263

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS-DR 301
                  L  + + +      R       ++   L+ A          + + V+SG  D 
Sbjct: 264 ---LCQALKAADTGVPWWCETRIDRLDE-EVVAALVDA------GCVGVEVGVESGDPDM 313

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY-- 359
              ++ +R      R+     R     + +   F++G P ET    R T D + ++G   
Sbjct: 314 QATAVRKRLNLDTVRKFHAVARKA--GLKLVFLFLIGLPRETRMSIRRTFDFILELGLAD 371

Query: 360 AQAFSFKYSPRLGTP 374
            +      +P  GT 
Sbjct: 372 TEFNLSVITPYPGTE 386


>gi|330963472|gb|EGH63732.1| lipoyl synthase [Pseudomonas syringae pv. actinidiae str. M302091]
          Length = 335

 Score = 59.2 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/215 (15%), Positives = 72/215 (33%), Gaps = 12/215 (5%)

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           + +    E  S  + G     G   F+ + + C + C FC V + R   +     +    
Sbjct: 75  HKLHSVCEEASCPNLGECFSGGTATFMIMGDICTRRCPFCDVGHGRPKAL--DADEPKSL 132

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI-KGLVRLRYTTSHPRD 272
           A  + D  +  + +   +    R    DG    F+D +  +  +  G+        +   
Sbjct: 133 AIAIADLRLKYVVITSVD----RDDLRDGGAQHFADCIREIRLLSPGVQLETLVPDYRGR 188

Query: 273 MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAIS 332
           M   L     +   +  +    V     R+ K+            ++ R + + P +   
Sbjct: 189 MDVALEITAAEPPDVFNHNLETV----PRLYKAARPGSDYQWSLTLLQRFKQMVPHVPTK 244

Query: 333 SDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           S  ++G  GETD++    M  + +         +Y
Sbjct: 245 SGLMLGL-GETDEEVIEVMKRMREHDIDMLTLGQY 278


>gi|296270427|ref|YP_003653059.1| radical SAM domain-containing protein [Thermobispora bispora DSM
           43833]
 gi|296093214|gb|ADG89166.1| Radical SAM domain protein [Thermobispora bispora DSM 43833]
          Length = 640

 Score = 59.2 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 58/314 (18%), Positives = 103/314 (32%), Gaps = 49/314 (15%)

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
             V++ D     K   + + +  + R       + I  GC + C FC           RS
Sbjct: 240 HTVMNLDEWPYPKKPLVPLAETVHERYS-----VEIFRGCTRGCRFCQAGMITRPVRERS 294

Query: 207 LSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           ++ + +  R  ++  G  E+ LL   +++     +       +D           V L  
Sbjct: 295 ITTIGEMVRVGLEESGFSEVGLLS--LSSADHSEIRDITKGLADRYE-----GTHVGLSL 347

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
            ++     +  L             L    + G++R+ K +N+  T  +  + +    + 
Sbjct: 348 PSTRVDAFNIDLANELSRNGR-RSGLTFAPEGGTERMRKVINKMVTEEDLIRTVTTAYAQ 406

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA------------QAFSFKYSPRLGT 373
                +   F+ G P ETD+D  A  DL  K+  A                  + P+  T
Sbjct: 407 GWR-HVKLYFMCGLPTETDEDVLAIADLARKVIKAGREVTGSKDIRCTVSIGGFVPKPHT 465

Query: 374 PGSNMLEQVDENVKAERLLCLQKKLR---------------------EQQVSFNDACVGQ 412
           P      Q D      RL  L+  LR                     E  +S  D  VG+
Sbjct: 466 P-FQWAAQCDHETVDRRLRALRDALRADKEYGRAIGYRYHDGKPSIIEGLLSRGDRRVGK 524

Query: 413 IIEVLIEKHGKEKG 426
           +I  + E  G+  G
Sbjct: 525 VIRAVWEDGGRFDG 538


>gi|295695941|ref|YP_003589179.1| lipoic acid synthetase [Bacillus tusciae DSM 2912]
 gi|295411543|gb|ADG06035.1| lipoic acid synthetase [Bacillus tusciae DSM 2912]
          Length = 309

 Score = 59.2 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 46/259 (17%), Positives = 92/259 (35%), Gaps = 26/259 (10%)

Query: 121 SPIVNVVVGPQT---YYRLPELLE-RARFGKRVVD--------TDYSVEDKFERLSIVDG 168
              + VV G        R P+ L+ + R G+   +        T ++V ++    ++ + 
Sbjct: 1   MEELRVVSGTGNSAGQGRRPDWLKIQLRTGENYRELKALMRGQTLHTVCEEARCPNLFEC 60

Query: 169 GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLL 228
             +R      F+ +   C + C FC V   R  E+   L +    A   +  G+  + + 
Sbjct: 61  WSHRT---ATFMILGRICTRACRFCAVTSGRPTEL--DLQEPERVAEATVAMGLRHVVVT 115

Query: 229 GQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLM 288
                  R    DG    F+  + ++        +       +     L K       ++
Sbjct: 116 SV----ARDDLEDGGAEIFASTIRAIRRRAPGCSVEVLIPDFQGQEMSLRKVLEAGPDIL 171

Query: 289 PYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFR 348
            +    V+  SD     +  R       +++ R +++ P I   S  +VG  GET ++  
Sbjct: 172 NHNVETVRRLSD----RVRSRAKYERSLELLRRSKAIAPRIPTKSSIMVGV-GETWEEIL 226

Query: 349 ATMDLVDKIGYAQAFSFKY 367
           ATMD +  +        +Y
Sbjct: 227 ATMDDLRAVDCDILTIGQY 245


>gi|312882714|ref|ZP_07742451.1| lipoyl synthase [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309369675|gb|EFP97190.1| lipoyl synthase [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 321

 Score = 59.2 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/182 (14%), Positives = 63/182 (34%), Gaps = 10/182 (5%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V    G  ++    +    A+ + D  +  + +   +    R    DG   
Sbjct: 94  CTRRCPFCDV--AHGRPLAPENDEPKKLAKTIQDMKLKYVVITSVD----RDDLRDGGAQ 147

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
            F+D    +  +   +++       R   D  ++   D     P +       + R+ + 
Sbjct: 148 HFADCNREIRALNPHIKIETLVPDFRGRMDVALELMKDNP---PDVFNHNLETAPRMYRK 204

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
                      Q++ + +   P++   S  ++G  GET ++    +  + + G       
Sbjct: 205 ARPGANYKWSLQLLQKFKQQHPNVPTKSGLMMGL-GETKEEIVEVLKDLREHGVTMLTIG 263

Query: 366 KY 367
           +Y
Sbjct: 264 QY 265


>gi|293391087|ref|ZP_06635421.1| lipoic acid synthetase [Aggregatibacter actinomycetemcomitans
           D7S-1]
 gi|290951621|gb|EFE01740.1| lipoic acid synthetase [Aggregatibacter actinomycetemcomitans
           D7S-1]
          Length = 320

 Score = 59.2 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/214 (14%), Positives = 71/214 (33%), Gaps = 10/214 (4%)

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           + +    E  S  +       G   F+ +   C + C FC V    G  ++    +    
Sbjct: 61  HGLHSVCEEASCPNLHECFNHGTATFMILGAICTRRCPFCDV--AHGKPLAPDPEEPRKL 118

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
           A  + D  +  + +   +    R    D     F+D +  +  +   +++       R  
Sbjct: 119 AETIQDMKLRYVVITSVD----RDDLPDRGAGHFADCVREIRALNPNIKIEILVPDFRGR 174

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
            +  ++   D     P +         R+ + +          +++   +++ P I   S
Sbjct: 175 IELALEKLKDNP---PDVFNHNLENVPRLYREIRPGADYQWSLRLLKEFKAMFPHIPTKS 231

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
             +VG  GET+++    M  +   G       +Y
Sbjct: 232 GLMVGL-GETNEEILDVMQDLRDHGVTMLTLGQY 264


>gi|253579916|ref|ZP_04857184.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848915|gb|EES76877.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 380

 Score = 59.2 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/248 (16%), Positives = 81/248 (32%), Gaps = 34/248 (13%)

Query: 186 CDKFCTFCVV------PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
           C K C +C        P  +   +   L ++ + A +     V  + +            
Sbjct: 20  CIKKCDYCDFLSGPSGPKEQADYVDALLEEI-NAAEEGKGRSVSSVFI------------ 66

Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY-------LH 292
             G           + EI   +R ++  +   +++  +     D + L  Y       L 
Sbjct: 67  --GGGTPSVLDERFIGEILNHIRRKFQIADHAEITIEVNPGTADRNKLQAYRTYGINRLS 124

Query: 293 LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352
           + +QS  DR LK + R H   ++ +     R    D  I+ D +   P +T + +   + 
Sbjct: 125 IGLQSPDDRELKILGRIHNYEQFLETYRSAREAGFD-NINIDLMSAIPDQTYEGWIHNLR 183

Query: 353 LVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK-----AERLLCLQKKLREQQVSFND 407
            V  +      ++      GTP ++    + +              L++   EQ    N 
Sbjct: 184 TVAGLDPEHISAYSLIIEEGTPFASRTLNLPDEDAEYNMYEATAQILREYGFEQYEISNY 243

Query: 408 ACVGQIIE 415
           A  G+   
Sbjct: 244 AKKGRECR 251


>gi|313114422|ref|ZP_07799948.1| radical SAM domain protein [Faecalibacterium cf. prausnitzii
           KLE1255]
 gi|310623249|gb|EFQ06678.1| radical SAM domain protein [Faecalibacterium cf. prausnitzii
           KLE1255]
          Length = 688

 Score = 59.2 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 64/399 (16%), Positives = 118/399 (29%), Gaps = 80/399 (20%)

Query: 29  VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
           + S+G  M  + ++ +     +   E V S+ D D     TC++ +              
Sbjct: 174 IISFG--MGEHQTVEIARRLAAG--EPVESITDVD----GTCYMTD------------FD 213

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPE-LLERARFGK 147
           +L    ++  G   V        A  +    +    +VV G     +  E  L +    K
Sbjct: 214 HLPERYVECAGFKKVASDK---TAYAKACRIQMDNQDVVSGQIIVQKQSEKYLVQNIPAK 270

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQ------EGCDKFCTFCVVPYTRGI 201
            +V  +                Y    GV A   +Q       GC   C FC +   +G 
Sbjct: 271 PLVRGELDKVYALPYTRRYHPIYESMGGVPAIREVQFSIIQNRGCFGGCNFCAIQLHQGR 330

Query: 202 EI-SRSLSQVVDEARKLIDN--------------------GVCEITLLGQNVNAWRGKGL 240
            + SRS   +V EA ++                          E  L G           
Sbjct: 331 RVTSRSADSIVAEAERMTHEPDFKGYIHDVGGPTANFRFPSCREQMLRGMCTGGKHCLAP 390

Query: 241 DG------EKCTFSDLLYSLSEIKGL--------VRLRYTTSHPRD-MSDCLIKAHGDLD 285
                   +   +  +L  + E+ G+        +R  Y  + P D     L++ H    
Sbjct: 391 TTCSHMIVDHSDYLKILRRVRELPGVKKVFIRSGIRFDYLMADPDDTFFKELVEYH---- 446

Query: 286 VLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA----ISSDFIVGFPG 341
            +   L +  +  +   L  M +      + +  D+   +         +    +   PG
Sbjct: 447 -VSGQLKVAPEHCAPNTLAYMGKP-PIETFNKFKDKFYELSKKAGKKQYLVPYLMSSHPG 504

Query: 342 ETDDDFRATMDLV--DKIGYAQAFSFKYSPRLGTPGSNM 378
            T  D     + +  + +   Q   F   P  GT  + M
Sbjct: 505 STLKDAVYLAEYLYKNHMRPEQVQDF--YPTPGTVSTCM 541


>gi|307264837|ref|ZP_07546399.1| Radical SAM domain protein [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306920095|gb|EFN50307.1| Radical SAM domain protein [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 354

 Score = 59.2 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/200 (15%), Positives = 70/200 (35%), Gaps = 11/200 (5%)

Query: 185 GCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK 244
           GC   C FC      G +         +  R+ I+  +  +    +   ++ G    G  
Sbjct: 16  GCPFKCVFCNQNSITGQQQ----EITEEYVRQTIETHLKTLPRDAEIEVSFFGGSFTGIP 71

Query: 245 CTFSDLLYSLSEI---KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
               +L   +++     G +     ++ P  +   +++        +  + L VQS  + 
Sbjct: 72  QDMQNLYLGIAKEYLDNGKIDAIRLSTRPDYIDTEILQNLKRYK--VSIIELGVQSMDEE 129

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
           +L    R HT+ +  + ++ IR    D  +    ++G PG+  +    T   + ++    
Sbjct: 130 VLLKSRRGHTSEDVVKAVNLIRQY--DFKLGLQIMIGLPGDNLEKSLNTAYKIVELKPDF 187

Query: 362 AFSFKYSPRLGTPGSNMLEQ 381
              +       T    M ++
Sbjct: 188 VRIYPTLVIKNTYLERMYKE 207


>gi|261212010|ref|ZP_05926296.1| lipoate synthase [Vibrio sp. RC341]
 gi|260838618|gb|EEX65269.1| lipoate synthase [Vibrio sp. RC341]
          Length = 315

 Score = 59.2 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/211 (15%), Positives = 72/211 (34%), Gaps = 12/211 (5%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V    G   +    +    A+ + D  +  + +   +    R    DG   
Sbjct: 88  CTRRCPFCDV--AHGRPNAPEAEEPKKLAQTIHDMKLKYVVITSVD----RDDLRDGGAQ 141

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
            F+D    +  +   +++       R   +  ++A  D     P +       + R+ + 
Sbjct: 142 HFADCNREIRALNPSIKIETLVPDFRGRMEVALEALKDNP---PDVFNHNLETAPRLYRK 198

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           +          +++ + +   PD+   S  ++G  GET ++    +  +   G +     
Sbjct: 199 VRPGANYKWSLELLRQFKEQHPDVPTKSGLMMGL-GETKEEIIEVLKDLRAHGVSMLTLG 257

Query: 366 KYSP--RLGTPGSNMLEQVDENVKAERLLCL 394
           +Y    R   P    +   + +   E  L L
Sbjct: 258 QYLAPSRHHLPVERYVPPAEFDELKEIALEL 288


>gi|154248860|ref|YP_001409685.1| radical SAM domain-containing protein [Fervidobacterium nodosum
           Rt17-B1]
 gi|154152796|gb|ABS60028.1| Radical SAM domain protein [Fervidobacterium nodosum Rt17-B1]
          Length = 469

 Score = 59.2 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/235 (14%), Positives = 84/235 (35%), Gaps = 21/235 (8%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
           + I  GC   C FCV  YT+       +  +V+   K  +N +    +     +      
Sbjct: 223 IEIGRGCIWRCAFCVTGYTKKPVKFAKIDDIVEIFEKYKNNEIEYGLISATITDYPY--- 279

Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
                    +LL  + +    V+   ++     +++ L++   + +       +  +  S
Sbjct: 280 -------LDELLDYVEK--NKVKFSVSSMRIDKVNERLLRVLKETNQY--SFTVAPEGIS 328

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
            +I   M +  +  +    +   R V  D ++   +I+G   E + D+    + + ++  
Sbjct: 329 QKIRDVMMKDMSTDDIINGLILGRKVGFD-SVKLYYIIGLEEEDEKDYNDFFEFIKEVQK 387

Query: 360 AQAFSFKYS-----PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDAC 409
               +   S     P+  TP       + +     R+L ++K L +   +  ++ 
Sbjct: 388 MGYKNITLSINPLVPKPMTPFEK-RNMISKKEYENRMLKIKKSLPKNVKADFESY 441


>gi|73951561|ref|XP_863490.1| PREDICTED: similar to lipoic acid synthetase isoform 1 precursor
           isoform 2 [Canis familiaris]
          Length = 353

 Score = 59.2 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/185 (18%), Positives = 63/185 (34%), Gaps = 33/185 (17%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLS--QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
           C + C FC V   R       L   +  + A+ + + G+  + L   +    R    DG 
Sbjct: 137 CTRGCRFCSVKTARNP---PPLDASEPYNTAKAIAEWGLDYVVLTSVD----RDDMPDGG 189

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
              F+  L  L  I+ +           D+    I+   +L                   
Sbjct: 190 AEHFAKTLRDLKAIEKV------ALSGLDVYAHNIETVPELQR----------------- 226

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           K  + R    +  +++   + VRPD+   +  ++G  GE D+   ATM  + +       
Sbjct: 227 KVRDPRANFSQSLRVLKHAKEVRPDVISKTSIMLGL-GENDEQVYATMKALREADVDCLT 285

Query: 364 SFKYS 368
             +Y 
Sbjct: 286 LGQYM 290


>gi|114567134|ref|YP_754288.1| hypothetical protein Swol_1616 [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
 gi|114338069|gb|ABI68917.1| conserved hypothetical protein [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
          Length = 638

 Score = 59.2 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 49/232 (21%), Positives = 91/232 (39%), Gaps = 22/232 (9%)

Query: 143 ARFGKRVV-DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           AR  KRVV D D +       +  ++  ++R     A L +  GC + C FC        
Sbjct: 246 ARVRKRVVKDLDQAYYPDKPLVPYMEITHDR-----AVLEVMRGCQRGCRFCHAGIVYRP 300

Query: 202 EISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
              RSL  +  +AR  + N G  EI+L   +   + G            LL  L    G 
Sbjct: 301 VRERSLETLESQARHQLQNTGYEEISLASLSSLDYSGIDP---------LLKGLVGNYGE 351

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL-HLPVQSGSDRILKSMNRRHTAYEYRQII 319
             +  +    R  +   I    ++  +      L  ++G+ R+   +N+  +  +    +
Sbjct: 352 KGIGVSLPSLRVDAFS-IDLANEVQKVRKTTLTLAPEAGTQRLRDIINKNVSEEQLLDAV 410

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
           +        +++   F++G PGE ++D    ++++ K+ Y      KYS R 
Sbjct: 411 EAAFKSGW-LSLKLYFMIGLPGEREEDLEGIIEILQKVKYIGD---KYSRRP 458


>gi|327401312|ref|YP_004342151.1| Radical SAM domain-containing protein [Archaeoglobus veneficus
           SNP6]
 gi|327316820|gb|AEA47436.1| Radical SAM domain protein [Archaeoglobus veneficus SNP6]
          Length = 482

 Score = 59.2 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 47/238 (19%), Positives = 98/238 (41%), Gaps = 27/238 (11%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
           L +  GC + C+FC+V         R +  +++ A       V ++ L+  +V       
Sbjct: 188 LEVGRGCKRACSFCIVRQIYSPCRWRDVKLLLEIAE-GAKKFVDKVALVAPSVT------ 240

Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
              +     +L+ SL ++  LV      +   D  + L++        +  L +  ++GS
Sbjct: 241 ---DHPKAKELIASLIDMGFLVSPSSVRADTLD--EELVELLSRGG--LESLTIAPEAGS 293

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDI-AISSDFIVGFPGETDDDFRATMDLVDKIG 358
           +R+ + + +  +  +         + +  I  +   F+VG PGE+ +D RA ++LVD++ 
Sbjct: 294 ERMRRLLRKGISEEDVLNAASL--AAKHGIEKVKMYFMVGLPGESHEDVRAIVELVDRVK 351

Query: 359 Y----AQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQ 412
                         P+  TP         ++VKA  +  L++K+R     F    +G+
Sbjct: 352 KLVPRVSVSINPLVPKPHTPLQWEPFGGIDDVKA-GMKALKEKIR-----FLKKELGR 403


>gi|325525325|gb|EGD03172.1| lipoyl synthase [Burkholderia sp. TJI49]
          Length = 324

 Score = 59.2 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 43/258 (16%), Positives = 78/258 (30%), Gaps = 16/258 (6%)

Query: 116 EILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDT------DYSVEDKFERLSIVDGG 169
           E + R P+  V   P    R P  +     G R V        +  +    E  S  + G
Sbjct: 21  EKMARIPVKIVATEPAAMLRKPAWIRATFPGSREVIALKNVLREQKLHTVCEEASCPNLG 80

Query: 170 YNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLG 229
                G   F+ + + C + C FC V    G  +     +    A  +    +  + +  
Sbjct: 81  ECFSHGTATFMIMGDICTRRCPFCDV--GHGRPLPLDPDEPARLAETIAAMQLKYVVITS 138

Query: 230 QNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMP 289
            +    R    DG    F+  +    +    +R+   T   R   D  +          P
Sbjct: 139 VD----RDDLRDGGAAHFAACIRDARQANPALRIEALTPDFRGRLDVALHLLAASP---P 191

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
            +         R+ +             ++   RS  P++   S  ++G  GE  D+   
Sbjct: 192 DVFNHNLETVPRLYRETRPGADYQHSLDVLQAFRSAVPNVPTKSGLMLGL-GEQIDEVEQ 250

Query: 350 TMDLVDKIGYAQAFSFKY 367
            M  +   G       +Y
Sbjct: 251 VMRDLRAHGVGMLTLGQY 268


>gi|50085376|ref|YP_046886.1| lipoyl synthase [Acinetobacter sp. ADP1]
 gi|49531352|emb|CAG69064.1| lipoate synthase [Acinetobacter sp. ADP1]
          Length = 337

 Score = 59.2 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/208 (16%), Positives = 64/208 (30%), Gaps = 12/208 (5%)

Query: 161 ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN 220
           E  +  +       G   F+ + + C + C FC V    G   +    +    A  + + 
Sbjct: 66  EEAACPNLPECFGGGTATFMIMGDICTRRCPFCDV--AHGRPNALDADEPRHMAETIANL 123

Query: 221 GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKA 280
            +    +   +    R   LDG    F D +     +     L       R   D  ++ 
Sbjct: 124 KLKYAVITSVD----RDDLLDGGAQHFVDCIKEARALSPNTLLEILVPDFRGRMDIALRI 179

Query: 281 HGDLDVLMPYLHLPVQSGSDRIL-KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGF 339
             +     P         +   L K+M           ++   +   PDI      +VG 
Sbjct: 180 MTE----CPPDVFNHNIETVPRLYKAMRPGSDYQHSLTLLKMFKEYCPDIPTKCGLMVGI 235

Query: 340 PGETDDDFRATMDLVDKIGYAQAFSFKY 367
            GET+D+  A +D +           +Y
Sbjct: 236 -GETEDEVIALLDDLRAHDVDYVTIGQY 262


>gi|332829368|gb|EGK02022.1| hypothetical protein HMPREF9455_00144 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 578

 Score = 59.2 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 61/407 (14%), Positives = 128/407 (31%), Gaps = 69/407 (16%)

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           + + R L +    E  +L++++ G     E +  L     ++ V+G +  + L ELL   
Sbjct: 92  VEQTRELISLLKAEKPELIIILGGPEVMYEPDFFLHNW-NIDYVIGGEGEFVLGELLTAI 150

Query: 144 RFG---------------KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
             G               K +V  D           +++      +    +     GC  
Sbjct: 151 EAGYAAEIKGVSSRDHISKVIVQADLEKLASLPSPYMLEEDREDMKNRMVYFETSRGCPY 210

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS 248
            C +C+    +G         +++    +IDNG  +I  L +  N  +         T  
Sbjct: 211 QCQYCLSSLEKG-VRYYPKEYILESLGYMIDNGAKQIKFLDRTFNLNKEHTH-----TVF 264

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIK------AHGDLDVLMPYLHLPVQSGSDRI 302
           D L        +   R   S   ++   L+K       + +L        + +QS  +  
Sbjct: 265 DFL--------IKNYRPKLSCQFEVYADLLKDETIDYLNTNLSKEFFRFEIGIQSTYEPT 316

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPD--IAISSDFIVGFPGETDDDFRATMDLV-----D 355
             ++ RR    ++  +   ++ +     I +  D I G P ET + F  + + V      
Sbjct: 317 NIAVRRR---QDFPLLARNVKKIMDGGKIDLHLDLIAGLPYETLERFIKSFNDVFSLGAK 373

Query: 356 KIGYAQAFSFKYSPRLGTPG---SNMLEQVD------ENVKAERLLCLQKKLREQQVSFN 406
           ++        + +              EQ         ++ ++ L  + +     +  +N
Sbjct: 374 EVQLGFLKMLRGTNLRKQAAQYGYKYDEQAPYEIECNADISSQELDRIHEAEHALEKFWN 433

Query: 407 DACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKV 453
                + +  L            GR       + +     IG   KV
Sbjct: 434 SGRFPRTMNELF------GIYYQGRYFE----LFD----EIGQYYKV 466


>gi|312073625|ref|XP_003139604.1| lipoic acid synthetase [Loa loa]
 gi|307765226|gb|EFO24460.1| lipoic acid synthetase [Loa loa]
          Length = 357

 Score = 59.2 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 77/220 (35%), Gaps = 32/220 (14%)

Query: 162 RLSIVDGGYNRKRGVTAFLTIQ---EGCDKFCTFCVVPYTRGIEISRSL---SQVVDEAR 215
           R   ++  ++  +   +  TI    + C + C FC V  +R            + ++ A+
Sbjct: 93  RCPNIEECWSGSKNAPSTATIMLMGDTCTRGCKFCSVKTSRKP----PPLNPEEPINTAK 148

Query: 216 KLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI-----KGLVRLRYTTSHP 270
            + + G+  + L   + +     G      T   L     EI         R   ++   
Sbjct: 149 AVAEWGIKYVVLTSVDRDDIEDGGASHIATTVQHLKQECPEILVECLVPDFRGSLSSVET 208

Query: 271 RDMSDCLIKA--HGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
              S   + A     +  L P++  P              R T  +  ++++  +  R D
Sbjct: 209 VASSGLDVYAHNMETVRRLTPWVRDP--------------RATYDQSLKVLEHAKKFRID 254

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
           I   +  ++G  GETD++   T+  + KIG       +Y 
Sbjct: 255 IVTKTSLMLGL-GETDEEVLTTLHDLRKIGVDALTFGQYM 293


>gi|306755837|sp|C1GFM3|LIPA_PARBD RecName: Full=Lipoyl synthase, mitochondrial; AltName: Full=Lipoate
           synthase; Short=LS; Short=Lip-syn; AltName: Full=Lipoic
           acid synthase; Flags: Precursor
 gi|226294560|gb|EEH49980.1| lipoyl synthase [Paracoccidioides brasiliensis Pb18]
          Length = 438

 Score = 59.2 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 45/258 (17%), Positives = 92/258 (35%), Gaps = 16/258 (6%)

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQ-EGCDKFCTFCVVPYTRG 200
           R +   R ++     E+          G + K   TA + +  + C + C FC V  +R 
Sbjct: 134 RIKSDLRGLNLHTVCEEARCPNISDCWGGSSKSAATATIMLMGDTCTRGCRFCSVKTSRT 193

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKG 259
                   +  + A  L   G+  + +   +    R    DG      + +  +  +  G
Sbjct: 194 PP-PLDPHEPENTAEALSRWGLGYVVMTSVD----RDDLADGGARHVVETVRKVKQKAPG 248

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           ++    T  +  D+    + A   LDV    +   V++ +  +     RR T  +  +++
Sbjct: 249 ILLECLTGDYAGDLEMVALVATSGLDVFAHNVET-VEALTPFVRD---RRATFQQSLRVL 304

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
              +  RP++   +  ++G  GET+     T+  +  +        +Y  R       + 
Sbjct: 305 KAAKEARPELITKTSIMLGL-GETETQLWETLRALRAVDVDVVTFGQYM-RPTKRHMAVH 362

Query: 380 EQVDENVK---AERLLCL 394
           E V   V     ER L +
Sbjct: 363 EYVRPEVFDLWKERALEM 380


>gi|242278810|ref|YP_002990939.1| radical SAM domain protein [Desulfovibrio salexigens DSM 2638]
 gi|242121704|gb|ACS79400.1| Radical SAM domain protein [Desulfovibrio salexigens DSM 2638]
          Length = 334

 Score = 59.2 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/216 (17%), Positives = 68/216 (31%), Gaps = 29/216 (13%)

Query: 167 DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR---SLSQVVDEARKLIDNGVC 223
           +  + R+  + A +     C+K C +C +       +SR    +  ++D AR   + G  
Sbjct: 30  EESFGREVYLRAIVEFSNICNKKCNYCGLRAPNSK-VSRYRMEVDSIIDSARLAAEAGAR 88

Query: 224 EITL-LGQNVNAWRGKGLDGEKCTFSDLLYSLS---EIKGLVRLRYTTSHPRDMSDCLIK 279
            I L  G + N     G   E        Y ++    +       Y          CL+K
Sbjct: 89  TIVLQSGDDFN--YSPGQVEEIILGIKESYDVAVTLSLGDRSAGEYEHWFNCGADRCLLK 146

Query: 280 AHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP-DIAISSDFIVG 338
                  +   +                       Y Q I+ +RS++     + S  IVG
Sbjct: 147 LETTAPDIYKKIRCG------------------ENYHQRIELLRSLQDIGYEVGSGIIVG 188

Query: 339 FPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
            P  T +     +  +  +      +  + P   TP
Sbjct: 189 LPDYTLEQLADDLLFLSALDLDMIAAGPFIPHPDTP 224


>gi|119503147|ref|ZP_01625231.1| hypothetical protein MGP2080_10803 [marine gamma proteobacterium
           HTCC2080]
 gi|119460793|gb|EAW41884.1| hypothetical protein MGP2080_10803 [marine gamma proteobacterium
           HTCC2080]
          Length = 716

 Score = 59.2 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 43/265 (16%), Positives = 80/265 (30%), Gaps = 48/265 (18%)

Query: 176 VTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDNGVCEITLL----GQ 230
           +   + I  GC   CTFC +    G  I +RS   ++ E  K+ D       ++    G 
Sbjct: 384 IQHSVNIMRGCFGGCTFCSITEHEGRIIQNRSEDSIIREVEKIRDTSPAFTGVISDLGGP 443

Query: 231 NVNAWR----------------------GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
             N WR                       K L+ ++     L      + G+ ++   + 
Sbjct: 444 TANMWRLACKSKEVEAKCRKLSCVFPGICKNLNTDQTPLVSLYRRARAVPGVKKVLIASG 503

Query: 269 HPRDMSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRR--HTAYEYRQIIDRI-R 323
              D++    +   +L    +  YL +  +   D  L  M +    T   ++ + D   +
Sbjct: 504 LRYDLAVETPEYVKELVTHHVGGYLKIAPEHTEDGPLGHMMKPGIGTYERFKTLFDTYSK 563

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML---- 379
                  +   FI   PG  D+D       +    +       + P      + M     
Sbjct: 564 QAGKKQYLIPYFIAAHPGTRDEDMVNLALWLKHNKFKADQVQTFYPSPMATATAMYHSRH 623

Query: 380 ----------EQVD--ENVKAERLL 392
                     + V     +K  RL 
Sbjct: 624 NPLKRVRRNSDSVPVVNKLKQRRLH 648


>gi|310822077|ref|YP_003954435.1| radical sam domain-containing protein [Stigmatella aurantiaca
           DW4/3-1]
 gi|309395149|gb|ADO72608.1| radical SAM domain protein [Stigmatella aurantiaca DW4/3-1]
          Length = 673

 Score = 59.2 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 57/322 (17%), Positives = 109/322 (33%), Gaps = 44/322 (13%)

Query: 78  EKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLP 137
           ++  + L   + L+    +E   +++  A C A   G+ I    P ++ VV  +    + 
Sbjct: 174 QQNVASLALAKELRRLVPREELTIIMGGANCEAD-MGKAISDNFPFLDHVVSGEGEGVIL 232

Query: 138 ELLE------------RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEG 185
           +L++            R     ++ + D      F+            +          G
Sbjct: 233 DLVKGVLNPGTNRPQPRYVAAPQIENMDSLPMPDFDHYFQAIKDMPMAKRANLTAESSRG 292

Query: 186 CDK----FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD 241
           C       CTFC +  +     S+   + V E R L         ++  N+       L 
Sbjct: 293 CWWGAKAHCTFCGLNGSGMAYRSKDAGKFVHELRTLAQRYGFNFFMMADNIL-----DLK 347

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
             K  F  L+    EI        T S+ R     L+ A G     +  L   ++S S  
Sbjct: 348 YIKSVFPALIEQGDEI---TMFYETKSNLRKEQLELMVAGG-----VTELQPGIESLSTP 399

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD------ 355
           +L+ M++  T  +  Q+I         I ++ + + GFPGE  +++     L+       
Sbjct: 400 VLELMDKGTTRLQNIQLIKWCEEFA--INVNWNILFGFPGEPPEEYEDMAKLMPSLFHLP 457

Query: 356 ------KIGYAQAFSFKYSPRL 371
                 +I   +   +  SP  
Sbjct: 458 PPGGCGRIRLDRFAPYWKSPEK 479


>gi|172046464|emb|CAQ17054.1| putative radical SAM domain protein [Stigmatella aurantiaca
           DW4/3-1]
 gi|208973133|tpe|CAQ34927.1| TPA: putative radical SAM protein [Stigmatella aurantiaca DW4/3-1]
          Length = 625

 Score = 59.2 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 57/322 (17%), Positives = 109/322 (33%), Gaps = 44/322 (13%)

Query: 78  EKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLP 137
           ++  + L   + L+    +E   +++  A C A   G+ I    P ++ VV  +    + 
Sbjct: 126 QQNVASLALAKELRRLVPREELTIIMGGANCEAD-MGKAISDNFPFLDHVVSGEGEGVIL 184

Query: 138 ELLE------------RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEG 185
           +L++            R     ++ + D      F+            +          G
Sbjct: 185 DLVKGVLNPGTNRPQPRYVAAPQIENMDSLPMPDFDHYFQAIKDMPMAKRANLTAESSRG 244

Query: 186 CDK----FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD 241
           C       CTFC +  +     S+   + V E R L         ++  N+       L 
Sbjct: 245 CWWGAKAHCTFCGLNGSGMAYRSKDAGKFVHELRTLAQRYGFNFFMMADNIL-----DLK 299

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
             K  F  L+    EI        T S+ R     L+ A G     +  L   ++S S  
Sbjct: 300 YIKSVFPALIEQGDEI---TMFYETKSNLRKEQLELMVAGG-----VTELQPGIESLSTP 351

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD------ 355
           +L+ M++  T  +  Q+I         I ++ + + GFPGE  +++     L+       
Sbjct: 352 VLELMDKGTTRLQNIQLIKWCEEFA--INVNWNILFGFPGEPPEEYEDMAKLMPSLFHLP 409

Query: 356 ------KIGYAQAFSFKYSPRL 371
                 +I   +   +  SP  
Sbjct: 410 PPGGCGRIRLDRFAPYWKSPEK 431


>gi|238797624|ref|ZP_04641120.1| Oxygen-independent coproporphyrinogen III oxidase [Yersinia
           mollaretii ATCC 43969]
 gi|238718488|gb|EEQ10308.1| Oxygen-independent coproporphyrinogen III oxidase [Yersinia
           mollaretii ATCC 43969]
          Length = 459

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 44/251 (17%), Positives = 88/251 (35%), Gaps = 26/251 (10%)

Query: 173 KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS-------QVVDEARKLIDNGVCEI 225
           +R ++ ++ I   C K C FC        +  ++         ++   A       V ++
Sbjct: 52  QRPLSLYVHIPF-CHKLCYFCGCNKLVTRQQHKADEYLAVLENEIRQRAALFAGRQVSQM 110

Query: 226 TLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE----IKGLVRLRYTTSHPRDMSDCLIKAH 281
              G       G      K   S L+  L E    + G  +       PR++   ++   
Sbjct: 111 HWGG-------GTPTYLNKTQISHLMNLLREHFDFLPGAEQSIEV--DPREIELDVLDHL 161

Query: 282 GDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPG 341
                    L + VQ  +  + + +NR         +I R +++  + + + D I G P 
Sbjct: 162 RAEG--FNRLSMGVQDFNKEVQRLVNREQDEDFIFALIARAKALGFN-STNIDLIYGLPK 218

Query: 342 ETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLRE 400
           +T + F  T+  V ++   +   F Y+       +   ++  D     +RL  LQ  +R 
Sbjct: 219 QTPESFAFTLKRVAELNPDRLSVFNYAHLPSLFAAQRKIKDADLPSAEQRLDILQHTIRF 278

Query: 401 QQVSFNDACVG 411
              S     +G
Sbjct: 279 LTESGYQ-FIG 288


>gi|238060566|ref|ZP_04605275.1| coproporphyrinogen III oxidase [Micromonospora sp. ATCC 39149]
 gi|237882377|gb|EEP71205.1| coproporphyrinogen III oxidase [Micromonospora sp. ATCC 39149]
          Length = 477

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/226 (17%), Positives = 75/226 (33%), Gaps = 32/226 (14%)

Query: 186 CDKFCTFCVVPYTRGIE----ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD 241
           C   C +C        E     SR        A +++        +LG            
Sbjct: 41  CASRCGYCDFNTYTADELGGGASRE-----AYADQVLAELALAGRVLGDAPPPRVDTVFV 95

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMP------------ 289
           G           L+ I   +   +  +   +++        + + + P            
Sbjct: 96  GGGTPTLLPADDLARILDGIDRTWGLAADAEVTTE-----ANPESVTPESLKSLRAAGYT 150

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
            + L +QS +  +L  ++RRH A    +     R    D  ++ D I G PGE  +DF A
Sbjct: 151 RISLGMQSAAPGVLAILDRRHRAGRATEAAREARDAGFD-HVNLDLIYGTPGENAEDFAA 209

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTP-GSNM-LEQVD---ENVKAER 390
           ++  V   G     ++      GT   + M   ++    ++V A+R
Sbjct: 210 SLAQVVSAGVDHVSAYALIVEDGTRLAARMRRGELPYPSDDVAADR 255


>gi|328911014|gb|AEB62610.1| oxygen-independent coproporphyrinogen III oxidase, putative
           [Bacillus amyloliquefaciens LL3]
          Length = 522

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 43/251 (17%), Positives = 91/251 (36%), Gaps = 21/251 (8%)

Query: 129 GPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
           G        +L +        ++    + D+  +L+ V   Y  K  V+ ++ I   C  
Sbjct: 149 GLTKEEAHADLKKDYLIHDEKINLMQEIVDR--QLAAVPDLYRVKDEVSIYIGIPF-CPT 205

Query: 189 FCTFCVVPYTR-----GIEIS------RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG 237
            C +C  P        G   S        + ++ +  ++  D  V  I   G    +   
Sbjct: 206 KCAYCTFPAYAIQGQAGRVGSFLWGLHYEMQKIGEWLKQH-DIKVTTIYFGGGTPTSITA 264

Query: 238 KGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQS 297
           + +D     + +++ S   ++ +  +      P  +++  +       +    + +  QS
Sbjct: 265 EEMDL---LYEEMVRSFPNVENIREITVEAGRPDTITEEKLAVLNKYKI--DRISINPQS 319

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
             +  LK++ R HT  E  +     R    +  I+ D I+G PGE   +FR ++D  +K+
Sbjct: 320 YENETLKAIGRHHTVEETIEKYHLSRKHGMN-NINMDLIIGLPGEGTAEFRHSLDETEKL 378

Query: 358 GYAQAFSFKYS 368
                     S
Sbjct: 379 MPESLTVHTLS 389


>gi|323491064|ref|ZP_08096256.1| putative Fe-S oxidoreductase [Vibrio brasiliensis LMG 20546]
 gi|323314728|gb|EGA67800.1| putative Fe-S oxidoreductase [Vibrio brasiliensis LMG 20546]
          Length = 315

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 2/88 (2%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +L L +Q+ ++  LK +NR H    Y +I  R R++   I + +  IVG P ET  D  A
Sbjct: 141 WLELGLQTANNHTLKRINRGHDFECYAEITRRARAL--GIKVCTHLIVGLPKETRQDNIA 198

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
           TM  V ++G             G+  + 
Sbjct: 199 TMQQVLEVGTDGIKLHGLHIVEGSTMAK 226


>gi|94969193|ref|YP_591241.1| radical SAM family Fe-S protein [Candidatus Koribacter versatilis
           Ellin345]
 gi|94551243|gb|ABF41167.1| Fe-S protein, radical SAM family [Candidatus Koribacter versatilis
           Ellin345]
          Length = 495

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 63/374 (16%), Positives = 127/374 (33%), Gaps = 56/374 (14%)

Query: 54  ERVNSMDDAD--LIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQ 111
                + + D  ++ L+    + + A ++   + R++           D  +VV G    
Sbjct: 55  TVTRFIKELDPAVVGLSVMTFQRRTASRIIDLIRRLK----------PDTKIVVGGYDPS 104

Query: 112 AEGEEILRRSPIVNVVVGP---------------QTYYRLPELLERARFG--KRVVDTDY 154
              +      P+  +V G                  +  +P L  RA  G     +   +
Sbjct: 105 LATQA-YESMPLDFIVRGEGELPFRRMLRALESDNNFASIPGLSYRAHDGWVHNAIGPVH 163

Query: 155 SVEDKFERLSIVD----GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS-RSLSQ 209
            +ED   RL   D     GY         +    GC   C+FC +   RG      S  +
Sbjct: 164 RLEDGEIRLPNRDARVLKGYTLLGRQVDVIETSRGCTYDCSFCSIIEMRGRNFHTYSFDR 223

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSH 269
           V+D+ R   D+G   + L+  N+     +     +   +     L+ I   V+   ++  
Sbjct: 224 VLDDIRDARDHGARTVFLVDDNIMLNVKRFEALCEAIIA---AGLNNIDYFVQAMTSSIA 280

Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSG--SDRILKSMNRRHTAYEYRQII--DRIRSV 325
               +   +           Y+ L +++   SD +    + ++TA E  + I    +R+V
Sbjct: 281 NHGETIAPLMQRAG----FRYVFLGIENVVESDLVFLKASAKNTAKENGKNIGNATMRAV 336

Query: 326 ----RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
               +  + +    I+G P +T +     ++   +      +    +P   TP   M  +
Sbjct: 337 DILHKHKMLVVGGLIIGNPDDTRETIEINLEFARQY-VDWPYIQHPTPYPRTP---MTAE 392

Query: 382 VDEN--VKAERLLC 393
             E   +  ERL  
Sbjct: 393 FRERGLIANERLEE 406


>gi|83308752|emb|CAJ01662.1| putative Fe-S oxidoreductase family 2 protein [Methylocapsa
           acidiphila]
          Length = 689

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 48/270 (17%), Positives = 85/270 (31%), Gaps = 48/270 (17%)

Query: 176 VTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDNGVCEITLL----GQ 230
           +   +TI  GC   C+FC +    G  I SRS   ++ E   + D       ++    G 
Sbjct: 348 IRHSVTIMRGCFGGCSFCSITEHEGRIIQSRSEESILREIETIRDKTEGFTGVISDIGGP 407

Query: 231 NVNAWR----------------------GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
             N +R                       K LD    +   L      + G+ ++   + 
Sbjct: 408 TANMYRMACKDKETEALCRRAACVYPDICKNLDTSHDSLIQLYRKARAVPGVKKVMVASG 467

Query: 269 HPRDMSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRR--HTAYEYRQIID-RIR 323
              D++        +L    +  YL +  +      L  M +        ++++ D   +
Sbjct: 468 VRYDLAVQSPAYVRELVEHHVGGYLKIAPEHTEAGPLSKMMKPGIGAYDRFKRLFDAAAK 527

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML---- 379
           + + +  +   FI   PG TD+D       + +  Y       Y P      + M     
Sbjct: 528 TAKKNYFLIPYFIAAHPGTTDEDMLNLALWLKRNKYRADQVQTYLPSPMALSTAMYHSGF 587

Query: 380 -----------EQVDENVKAERLLCLQKKL 398
                      E+VD  VK  R   L K  
Sbjct: 588 NPLKPVRRDASEKVD-AVKGLRQRRLHKAF 616


>gi|193212699|ref|YP_001998652.1| lipoyl synthase [Chlorobaculum parvum NCIB 8327]
 gi|238692639|sp|B3QNE9|LIPA_CHLP8 RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|193086176|gb|ACF11452.1| lipoic acid synthetase [Chlorobaculum parvum NCIB 8327]
          Length = 292

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/216 (15%), Positives = 68/216 (31%), Gaps = 15/216 (6%)

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           +S+          +      +G   FL +   C + C FC V   R   +     +    
Sbjct: 32  HSLHTVCRSAMCPNLHECWSKGTATFLLLGNVCTRSCRFCAVGTERRPAM-PDPEETAKI 90

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
              +    +    L   N    R    DG    + + + ++ E+   V +       +  
Sbjct: 91  GEAVKAMKLRHAVLTSVN----RDDLADGGAAHWVETIRAIREVNPGVSIECLIPDFQGD 146

Query: 274 SDCLIKAHGDLDVLMPYL--HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAI 331
              L     +   ++ +    +P +  S R   S            +I+R +     +A 
Sbjct: 147 EQALDSVMRERPEVLNHNIETVPSRYASVRPQASY------ERSLAVIERAKRQFR-LAT 199

Query: 332 SSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
            S  +VG  GET ++  A +  +   G       +Y
Sbjct: 200 KSGMMVGM-GETPEEVNAALRDLRAHGCDMVTIGQY 234


>gi|167758798|ref|ZP_02430925.1| hypothetical protein CLOSCI_01140 [Clostridium scindens ATCC 35704]
 gi|167663538|gb|EDS07668.1| hypothetical protein CLOSCI_01140 [Clostridium scindens ATCC 35704]
          Length = 468

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/203 (16%), Positives = 66/203 (32%), Gaps = 22/203 (10%)

Query: 174 RGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQN-- 231
            G + ++ I   C   C++C          S +L+         +D    E+  + Q   
Sbjct: 136 NGYSLYVGIPF-CPTVCSYCSFS-------SGALADWESRVEDYLDALCKELKFIAQKSS 187

Query: 232 ---VNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD------MSDCLIKAHG 282
              +N     G      T   L   L  I       +   +  +      ++   ++A  
Sbjct: 188 LKKLNTIYIGGGTPTTLTAGQLERLLCCIDENFSREHLLEYTVEAGRPDSITREKLEAIR 247

Query: 283 DLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGE 342
                +  + +  QS   + L ++ RRH+  +        R +  D  I+ D I G PGE
Sbjct: 248 RHG--VTRISINPQSMQQKTLDAIGRRHSVEQIITAYGMARELGFD-NINMDIIAGLPGE 304

Query: 343 TDDDFRATMDLVDKIGYAQAFSF 365
              D   T+  + ++        
Sbjct: 305 DLHDMEDTLRQIGRLMPDSLTVH 327


>gi|296133568|ref|YP_003640815.1| Radical SAM domain protein [Thermincola sp. JR]
 gi|296032146|gb|ADG82914.1| Radical SAM domain protein [Thermincola potens JR]
          Length = 362

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/216 (16%), Positives = 71/216 (32%), Gaps = 16/216 (7%)

Query: 173 KRGVTAFLTIQE-GCDKFCTFCVVPYTRGIEISRSLSQVVDEARKL------IDNGVCEI 225
            R     + I + GC   C FC      G     +  +V  +          ++N   E+
Sbjct: 5   TRHFIIPIFIPDLGCPNQCVFCNQKKITGQVNIPTAEEVAKKIGDYLATLPDVENRKVEV 64

Query: 226 TLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLD 285
              G +  A        +    +   Y   +I+G+ R+        + +  ++ A+G   
Sbjct: 65  AFYGGSFTAI-PVDEQRKFLRAAWDYYRTGKIQGI-RISTRPDKIDEDTLSILMAYG--- 119

Query: 286 VLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDD 345
             +  + L VQS    +L    R H      +    ++S      +    ++G PG++ +
Sbjct: 120 --VDTIELGVQSMDKDVLAFARRGHATEHVVKAAKLVKSW--GFFLGVQIMIGLPGDSQE 175

Query: 346 DFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
               T + V  +       +      GT    +  Q
Sbjct: 176 KALKTCNEVIDLSPDFVRIYPVLVLKGTELERLFRQ 211


>gi|284052373|ref|ZP_06382583.1| Radical SAM domain protein [Arthrospira platensis str. Paraca]
          Length = 366

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 38/234 (16%), Positives = 74/234 (31%), Gaps = 15/234 (6%)

Query: 127 VVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGC 186
           VVG           +     K   + DY  E   E        Y +       +  + GC
Sbjct: 31  VVGQTQPRDRMIHEKPTNIEKTACNYDYISEVWPEF-----DYYFQDGDFYIGVQTKRGC 85

Query: 187 DKFCTFCVVPYTRGIEISR-SLSQVVDEARKLIDNGVCEITLL-GQNVNAWRGKGLDGEK 244
              C +CV     G ++      +VV E ++L   G+        Q + A R        
Sbjct: 86  PHNCCYCVYTVIEGKQVRINPADEVVAEMKQLYHRGIRNFWFTDAQFIPARRFID----- 140

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304
               +LL  + +               +++  L          M Y  + + SGS  +++
Sbjct: 141 -DAVELLQKILDAGMNDINWAAYIRADNLTPQLCDLMVKTG--MNYFEIGITSGSQELVR 197

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
            M   +      +    +++   +  +S ++      ET D  R T+    ++ 
Sbjct: 198 KMRMGYNLRVVLENCRDLKAAGFNDLVSVNYSFNVIDETLDTIRQTIAYHRELE 251


>gi|238896527|ref|YP_002921267.1| hypothetical protein KP1_4714 [Klebsiella pneumoniae NTUH-K2044]
 gi|238548849|dbj|BAH65200.1| putative Fe-S oxidoreductase [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
          Length = 727

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 50/316 (15%), Positives = 98/316 (31%), Gaps = 58/316 (18%)

Query: 161 ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLID 219
              S  D        +   + I  GC   C+FC +    G  I SRS   +++E   + D
Sbjct: 361 PHPSYGDARIPAYEMIRFSINIMRGCFGGCSFCSITEHEGRIIQSRSEDSIINEIEAIRD 420

Query: 220 N--GVCEIT--LLGQNVNAWR----------------------GKGLDGEKCTFSDLLYS 253
              G   +   L G   N +                          +D       +L   
Sbjct: 421 TVPGFTGVISDLGGPTANMYMLRCKSPRAEQTCRRLSCVYPDICPHMDTNHEPTINLYRR 480

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRRH- 310
             E+KG+ ++   +    D++    +   +L    +  YL +  +   +  L  M +   
Sbjct: 481 ARELKGIKKILIASGVRYDIAVEDPRYIKELATHHVGGYLKIAPEHTEEGPLSKMMKPGM 540

Query: 311 -TAYEYRQIIDRI-RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY--AQAFSFK 366
            +   ++++ D   +    +  +   FI   PG  D+D       + K  +   Q  +F 
Sbjct: 541 GSYDRFKELFDTYSKQAGKEQYLIPYFISAHPGTRDEDMVNLALWLKKHRFRLDQVQNFY 600

Query: 367 YSPRLGTPGSNMLEQ--------------VDENVKAERL-LCLQK--------KLREQQV 403
            SP   +       +              V +  K  RL   L +         +R+   
Sbjct: 601 PSPLANSTTMYYTGKNPLGKIGYKSEEVVVPKGDKQRRLHKALLRYHDPANWPLIRQALE 660

Query: 404 SF-NDACVGQIIEVLI 418
           +      +G   + L+
Sbjct: 661 AMGKKHLIGSRRDCLV 676


>gi|332830587|gb|EGK03201.1| oxygen-independent coproporphyrinogen III oxidase [Dysgonomonas
           gadei ATCC BAA-286]
          Length = 455

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/217 (17%), Positives = 81/217 (37%), Gaps = 16/217 (7%)

Query: 162 RLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNG 221
           R  +++      R ++ ++ I   C   C +C        ++ R    V+     L    
Sbjct: 35  RQIVIESNKENPRHISVYIHIPF-CYHMCFYC----GCNSQLLRDNDIVLKYIDALKKEI 89

Query: 222 VCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAH 281
              + LL  + N    +   G     S  +  L E+  L+   +      +++      +
Sbjct: 90  RMVLPLL--DRNRKISQIHYGGGTPTSQPVSVLKELNELILSEFDCIENPEIAIECHPGY 147

Query: 282 GDL-------DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSD 334
            D        D     + L VQ   + +LK+ NR+        ++  +R+   +++++ D
Sbjct: 148 ADEGYWNELVDAGFNRISLGVQDFDEEVLKASNRKAPRMAMEDVVRILRNR--NVSLNMD 205

Query: 335 FIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
           FI G P +T + F  T++    +   +  +F Y+   
Sbjct: 206 FIYGLPLQTPESFTKTINRAISLRPDRIVTFSYAHVP 242


>gi|317503273|ref|ZP_07961327.1| coproporphyrinogen dehydrogenase [Prevotella salivae DSM 15606]
 gi|315665611|gb|EFV05224.1| coproporphyrinogen dehydrogenase [Prevotella salivae DSM 15606]
          Length = 384

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/146 (23%), Positives = 57/146 (39%), Gaps = 10/146 (6%)

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
            +P D+++       DL      + +  Q+ S+  LK ++RRH   +  Q + R+R    
Sbjct: 100 CNPDDITEEFAVQLADLK--FNRVSMGAQTFSNERLKFLHRRHNREDIFQAVTRLRHA-- 155

Query: 328 DI-AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ----- 381
            I  IS D + GFP ET  D++  +     +G     ++      GT   NM E      
Sbjct: 156 GIQNISIDLMFGFPNETIVDWQRDIREAIDLGVEHISAYSLMYEEGTSLFNMREHQKIKE 215

Query: 382 VDENVKAERLLCLQKKLREQQVSFND 407
           +DE         L  +L        +
Sbjct: 216 IDEETSLSMYNILINELTNAGYEQYE 241


>gi|229543801|ref|ZP_04432860.1| oxygen-independent coproporphyrinogen III oxidase [Bacillus
           coagulans 36D1]
 gi|229324940|gb|EEN90616.1| oxygen-independent coproporphyrinogen III oxidase [Bacillus
           coagulans 36D1]
          Length = 377

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/206 (17%), Positives = 70/206 (33%), Gaps = 22/206 (10%)

Query: 186 CDKFCTFCVVPYT--RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
           C+  C +C       +G  +   +  +++E R              +           G 
Sbjct: 11  CEHICYYCDFNKFLLKGQPVDEYIEMLLEEMRIK----------TAEAPCEKLSTVFVGG 60

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL-------MPYLHLPVQ 296
               +     L ++   +R         + +          + L       +  L   VQ
Sbjct: 61  GTPTALNERQLEKLLAAIRTILPYDGDGEFTFEANPGETSEEKLRLLHDYGVNRLSFGVQ 120

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA-ISSDFIVGFPGETDDDFRATMDLVD 355
           S +DR+L+ + R H   +  + I   R +    + IS D +   PG+T +DFR T+D   
Sbjct: 121 SFNDRLLEKIGRTHRREDVYRTISHARKI--GFSNISMDLMFALPGQTLEDFRETLDEAL 178

Query: 356 KIGYAQAFSFKYSPRLGTPGSNMLEQ 381
            +G     S+       T   N+L +
Sbjct: 179 SMGLPHYSSYSLIIEPKTIFYNLLRK 204


>gi|331084612|ref|ZP_08333700.1| oxygen-independent coproporphyrinogen III oxidase [Lachnospiraceae
           bacterium 9_1_43BFAA]
 gi|330410706|gb|EGG90128.1| oxygen-independent coproporphyrinogen III oxidase [Lachnospiraceae
           bacterium 9_1_43BFAA]
          Length = 404

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 46/252 (18%), Positives = 92/252 (36%), Gaps = 28/252 (11%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQN---VNAWRGKGLD- 241
           C K C +C   +  G         +      L+   + +   L +N      + G G   
Sbjct: 14  CMKKCAYCD--FLSGPA---PRETIDRYVTALVAE-IRQYQKLAENYRVTTIFFGGGTPS 67

Query: 242 ----GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQS 297
               G      D L  + EI+    +    ++P  ++   ++A+    +    +   +QS
Sbjct: 68  ILSGGRMKEIFDALRDVFEIQADAEITME-ANPGTVTKENLQAYRACGI--NRISFGLQS 124

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
             D+ LK + R HT  ++ +  D  R       I+ D I   PG+T + +  T+D V ++
Sbjct: 125 VDDKELKLLGRVHTMRQFEESYDLARKAGFQ-NINIDLISAIPGQTVESWEHTLDTVIRM 183

Query: 358 GYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACV--GQIIE 415
                 ++      GT    +     EN K E     Q    E+ ++ +   +  G+   
Sbjct: 184 NPEHISAYSLIIEEGTLFYEIYG---ENAKEE-----QDSQCEKCLADDGKQMDTGKNFP 235

Query: 416 VLIEKHGKEKGK 427
            L ++  + +  
Sbjct: 236 KLPDEEAERRMY 247


>gi|312880406|ref|ZP_07740206.1| Radical SAM domain protein [Aminomonas paucivorans DSM 12260]
 gi|310783697|gb|EFQ24095.1| Radical SAM domain protein [Aminomonas paucivorans DSM 12260]
          Length = 603

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 41/236 (17%), Positives = 82/236 (34%), Gaps = 26/236 (11%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
           + +  GC + C FC           RS + V D+ ++L+D                    
Sbjct: 247 VQVFRGCTRGCRFCQAGMIDRPVRERSAASVCDQVKRLLDF-----------TGWEEVGF 295

Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLR-----YTTSHPRDMSDCLIKAHGDLDVLMPYLHLP 294
           L    C +S L  +L  +  ++R R       +      S  L      L      L   
Sbjct: 296 LSLATCDWSGLEEALVRLDEILRPRSIKLSLPSLRMDAFSVELAAKLETLRK--GGLTFA 353

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
            ++G+ R+   +N+  T  + R  ++   +   D  +   F++G P ET++D    ++ +
Sbjct: 354 PEAGTQRLRDVINKGVTEEDIRASLEATFAHGWD-RVKLYFMMGLPTETEED----LEGI 408

Query: 355 DKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACV 410
            +I      + +   R G    ++   V    KA      + +   + +      V
Sbjct: 409 VRIAKETVRTARAHKRRGEVAISLAGFVP---KAHTPFQWEAQATREALRERGRWV 461


>gi|308048529|ref|YP_003912095.1| lipoic acid synthetase [Ferrimonas balearica DSM 9799]
 gi|307630719|gb|ADN75021.1| lipoic acid synthetase [Ferrimonas balearica DSM 9799]
          Length = 322

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 39/245 (15%), Positives = 85/245 (34%), Gaps = 19/245 (7%)

Query: 131 QTYYRLPELL--------ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTI 182
           +   R PE L        ER    K+ +  D+ +    E  S  +       G   F+ +
Sbjct: 33  EEMLRKPEWLKIKLPASSERIDQVKQAM-RDHGLHSVCEEASCPNLAECFNHGTATFMIL 91

Query: 183 QEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG 242
              C + C FC V    G  +     + V  AR + D  +  + +   +    R    DG
Sbjct: 92  GAICTRRCPFCDV--AHGRPLKPDPEEPVKLARTIRDMKLKYVVITSVD----RDDLRDG 145

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
               F+D +  +      +++       R   D  ++   D     P +       + R+
Sbjct: 146 GAQHFADCIREIRLRNPGIKIEILVPDFRGRIDRALEILKDNP---PDVFNHNLETAPRL 202

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
            ++     +      ++ + +++ P++   S  ++G  GET+++    +  +        
Sbjct: 203 YRAARPGASYQWSLDLLKKFKAMHPEVPTKSGLMMGL-GETNEEIVEVLKDLRAHNVEML 261

Query: 363 FSFKY 367
              +Y
Sbjct: 262 TLGQY 266


>gi|255323729|ref|ZP_05364857.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Corynebacterium tuberculostearicum SK141]
 gi|255299219|gb|EET78508.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Corynebacterium tuberculostearicum SK141]
          Length = 379

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 52/122 (42%), Gaps = 6/122 (4%)

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
           + L +QS S  +L+ + R HT           R+   +  ++ D I G P ETDD+ R T
Sbjct: 122 ISLGMQSASPGVLQVLERAHTPGRAFDAAREARAAGFE-HVNLDMIYGTPTETDDNVRET 180

Query: 351 MDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ-----VDENVKAERLLCLQKKLREQQVSF 405
           +D V + G     ++      GT  +  + +      DE+V A R   +   L  +   +
Sbjct: 181 LDRVLETGVDHVSAYSLIVEDGTRMARKVNKGILPAPDEDVLARRYEMISSTLESEGFEW 240

Query: 406 ND 407
            +
Sbjct: 241 YE 242


>gi|268679647|ref|YP_003304078.1| radical SAM protein [Sulfurospirillum deleyianum DSM 6946]
 gi|268617678|gb|ACZ12043.1| Radical SAM domain protein [Sulfurospirillum deleyianum DSM 6946]
          Length = 504

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 39/273 (14%), Positives = 86/273 (31%), Gaps = 18/273 (6%)

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVV-GPQT---YYRLPELLE 141
            +  L     K    +++++ G  A      +       + ++ G      Y     +L 
Sbjct: 71  EVHELLEILKKVAPSVIIILGGPEASHFPHRV--DFEKADYIIQGEGDVAFYALCKAILS 128

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
                ++V+          +        ++ K     ++    GC   C FC+       
Sbjct: 129 DNALSEKVIKAPMVDMSTIKLPYDYYTDHDIKNRYC-YVEASRGCPFTCEFCL-SSAEKK 186

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
                + + + E  KL   GV     + +  N              + LL    E +   
Sbjct: 187 VRDIEIGRFIGELEKLWHRGVRNFKFIDRTFNLS--------IENATKLLDFFLEKEEEY 238

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
            + +    P      L +           L + +Q+    I K+++RR    +    +  
Sbjct: 239 FVHFEVI-PDHFPQKLREKIALFPPAALQLEVGIQTLDPLISKNIHRRLNLPKIEDNLAF 297

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           ++       +  D I+G PGE+ + F   +D++
Sbjct: 298 LQQQT-HAHLHVDLIIGLPGESLEGFGRNLDML 329


>gi|238790753|ref|ZP_04634513.1| Oxygen-independent coproporphyrinogen III oxidase [Yersinia
           frederiksenii ATCC 33641]
 gi|238721151|gb|EEQ12831.1| Oxygen-independent coproporphyrinogen III oxidase [Yersinia
           frederiksenii ATCC 33641]
          Length = 457

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 42/245 (17%), Positives = 90/245 (36%), Gaps = 14/245 (5%)

Query: 173 KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEI-TLLGQN 231
           +R ++ ++ I   C K C FC        +  ++   +V   +++    V      + Q 
Sbjct: 50  QRPLSLYVHIPF-CHKLCYFCGCNKLVTRQQHKADEYLVVLEKEIRQRAVLFAGRQVSQ- 107

Query: 232 VNAWRGKGLDGEKCTFSDLLYSLSE----IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL 287
           ++   G      K   + L+  L E    + G  +       PR++   ++         
Sbjct: 108 MHWGGGTPTYLNKTQITHLMNLLRENFDFLPGAEQSIEV--DPREIELDVLDHLRAEG-- 163

Query: 288 MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDF 347
              L + VQ  +  + + +NR         +I R +++  + + + D I G P +T + F
Sbjct: 164 FNRLSMGVQDFNKEVQRLVNREQDEDFIFALIARAKALGFN-STNIDLIYGLPKQTAESF 222

Query: 348 RATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFN 406
             T+  V ++   +   F Y+       +   ++  D     +RL  LQ  +     S  
Sbjct: 223 AFTLKRVVELNPDRLSVFNYAHLPSLFAAQRKIKDADLPTAEQRLDILQHTISFLTESGY 282

Query: 407 DACVG 411
              +G
Sbjct: 283 Q-FIG 286


>gi|256752104|ref|ZP_05492971.1| Radical SAM domain protein [Thermoanaerobacter ethanolicus CCSD1]
 gi|320115482|ref|YP_004185641.1| Radical SAM domain-containing protein [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
 gi|256749013|gb|EEU62050.1| Radical SAM domain protein [Thermoanaerobacter ethanolicus CCSD1]
 gi|319928573|gb|ADV79258.1| Radical SAM domain protein [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
          Length = 347

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 36/249 (14%), Positives = 78/249 (31%), Gaps = 32/249 (12%)

Query: 139 LLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKR--------GVTAFLTIQEGCDKFC 190
           L+E+      +   +       E  S +    +R R         +   +     C   C
Sbjct: 10  LIEKLETHHNIDKEELVTLLALEDPSKIYQAADRVRKKYVGDEVHLRGLIEFSNYCSNTC 69

Query: 191 TFCVVPYTRGIE----ISR-SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
            +C     RG        R    +++   +     G+  I L         G+    +  
Sbjct: 70  FYC---GLRGPNKTIKRYRMEPEEILQCVKYGASVGLKTIVLQS-------GEDKYFKIT 119

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
           T   ++  + ++   V L       +D    L KA  D         L +++ +  + + 
Sbjct: 120 TLCKIIEEIKKLDIAVTLSIGELSTKDY-AELKKAGADR------YLLRIETTNKELYQK 172

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           ++   +     + +  +R +     + +  +VG PG+T +     +    KI        
Sbjct: 173 LHPGMSYENRVRCLMDLREL--GYEVGTGSLVGLPGQTLEMLAQDLIFFKKIDADMLGIG 230

Query: 366 KYSPRLGTP 374
            + P   TP
Sbjct: 231 PFIPCENTP 239


>gi|225387562|ref|ZP_03757326.1| hypothetical protein CLOSTASPAR_01327 [Clostridium asparagiforme
           DSM 15981]
 gi|225046342|gb|EEG56588.1| hypothetical protein CLOSTASPAR_01327 [Clostridium asparagiforme
           DSM 15981]
          Length = 446

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 59/370 (15%), Positives = 115/370 (31%), Gaps = 68/370 (18%)

Query: 42  LRMEDMFFSQGY--ERVNSMDDA------------DLIVLNTCHIREKAAEKVYSFLGRI 87
             +  +   +GY  E  +   +A            D+  +  C  R K    +  ++   
Sbjct: 31  EYLSAVLKQEGYAPEIFDVPREAVSLEEKLREYRPDVFYI--CG-RIKQEVFMKEYIRLA 87

Query: 88  RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147
           + L          ++ +V G   Q   E      P  + ++     +++P ++E     +
Sbjct: 88  KRL-------NPQVVTIVGGLHVQKNYERFY--MPETDYILTTFDVFQVPGIIEGEAPEE 138

Query: 148 -----------------RVVDTDYSVEDKFERLSIVDGGYN-RKRGVTAFLTIQEGCDKF 189
                            +  D                G YN  +    A +     C   
Sbjct: 139 IPGLCYREGGRWKCQAAQPFDIRRLPWPDRSYFYSHSGHYNYFEISHCAQVRTAYSCAFR 198

Query: 190 CTFCVVPYTR-GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK-CTF 247
           C FC       G   +R +  VV+E   +   G   I ++  +        LD ++   F
Sbjct: 199 CRFCYRNVLNCGTYTARDIEDVVEEIASIDSEG---IYIIDDDFL------LDAKRIRRF 249

Query: 248 SDLLYSLSEIKGLVRLRYTTSHPRDM---SDCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304
            DL+      +  +   Y      D    +  LI+   ++ +L  YL + +++  D  LK
Sbjct: 250 IDLIK-----EKGIHKTYVCMGRVDFILKNRQLIRDFAEIGLL--YLIVGLEAVEDAYLK 302

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
             ++R       + +     +   I I   FIV    +   DF      +   G      
Sbjct: 303 QYDKRTKISWNAECVRFTNEL--GIKIFGMFIVDLDFQ-KKDFDRLYTWIATRGVNNVAV 359

Query: 365 FKYSPRLGTP 374
             ++P  GT 
Sbjct: 360 SIFTPVPGTE 369


>gi|281180054|dbj|BAI56384.1| conserved hypothetical protein [Escherichia coli SE15]
          Length = 739

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 43/301 (14%), Positives = 96/301 (31%), Gaps = 66/301 (21%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARK---------------------- 216
           + I  GC   C+FC +    G  I SRS   +++E                         
Sbjct: 380 VNIMRGCFGGCSFCSITEHEGRIIQSRSEDSIINEIEAIRDTVPGFTGVISDLGGPTANM 439

Query: 217 --------LIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
                     +     ++ +  ++ +      D       +L     ++KG+ ++   + 
Sbjct: 440 YMLRCKSPRAEQTCRRLSCVYPDICSHM----DTNHEPTINLYRRARDLKGIKKILIASG 495

Query: 269 HPRDMSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRRH--TAYEYRQIIDRI-R 323
              D++    +   +L    +  YL +  +   +  L  M +    +   ++++ D   +
Sbjct: 496 VRYDIAVEDPRYIKELATHHVGGYLKIAPEHTEEGPLSKMMKPGMGSYDRFKELFDTYSK 555

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY--AQAFSFKYSPRLGT-------- 373
               +  +   FI   PG  D+D       + K  +   Q  +F  SP   +        
Sbjct: 556 QAGKEQYLIPYFISAHPGTRDEDMVNLALWLKKHRFRLDQVQNFYPSPLANSTTMYYTGK 615

Query: 374 -PGSNMLEQ-----VDENVKAERL-LCLQK--------KLREQQVSF-NDACVGQIIEVL 417
            P + +  +     V +  K  RL   L +         +R+   +      +G   + L
Sbjct: 616 NPLAKIGYKSEDVFVPKGDKQRRLHKALLRYHDPANWPLIRQALEAMGKKHLIGSRRDCL 675

Query: 418 I 418
           +
Sbjct: 676 V 676


>gi|268325115|emb|CBH38703.1| conserved hypothetical protein, radical SAM family [uncultured
           archaeon]
          Length = 499

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 39/250 (15%), Positives = 85/250 (34%), Gaps = 24/250 (9%)

Query: 158 DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG-IEISRSLSQVVDEARK 216
           D++  L           G    +    GC   C FC V   +G   ISRS   ++ E + 
Sbjct: 237 DEYYELKFTRELPKELSGFEFSVITHRGCIGDCNFCSVNLIQGDKIISRSEESILREIKA 296

Query: 217 LI----------DNGVCEITLLGQNVNAWRGKGLDGE-----KCTFSDLLYSLSEIKGLV 261
           +           D G     + G + N      +D             LL  + +++G+ 
Sbjct: 297 ITKLPHFTGNIDDLGGPSANMYGMDCNKCNSSCIDCNVLDRSNKRMVGLLRKVRKVEGVK 356

Query: 262 RLRYTTSHPRDM-SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
           ++   +    D+ +   I+       L   + +  +  +  +LK MN+     + ++ + 
Sbjct: 357 KVNIRSGIRFDLTTPEYIEEITKY-HLFNTVRIAPEHVNKNVLKLMNK--DKGDLKKFML 413

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
             +     ++    F+   PG T  + +     + ++         ++P   T  + M  
Sbjct: 414 EFKKTNRKLSFY--FMTAHPGSTMKEAKELARAIKRLK-NAESVQIFTPTPMTVSTCMYY 470

Query: 381 Q-VDENVKAE 389
             +D   K +
Sbjct: 471 TGMDPKTKKK 480


>gi|221194555|ref|ZP_03567612.1| coproporphyrinogen III oxidase [Atopobium rimae ATCC 49626]
 gi|221185459|gb|EEE17849.1| coproporphyrinogen III oxidase [Atopobium rimae ATCC 49626]
          Length = 426

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 81/230 (35%), Gaps = 16/230 (6%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C   C +C          S  L    + A +        + LL    +A+ G G      
Sbjct: 40  CAHKCVYCDFASWATAS-SDPLMARYEAAIESQIQEAYALGLLEDCQSAYVGGGTP--TL 96

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDM--SDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
             ++L   +S I+    +   +        +D ++    D       + L VQS  D  L
Sbjct: 97  LGAELGRLVSCIRAKAPIAEFSCEANPDSLTDEVLLVLKDAGT--TRISLGVQSFCDAEL 154

Query: 304 KSMNRRHTAYEYRQIIDRIRSVR-PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
             + R H+A   +Q  DR R+       +S D +    G+T   ++ T+    ++     
Sbjct: 155 LWLGRIHSA---KQAFDRARAAASMGFDVSCDVMCALKGQTQKSWQQTLATFLELDVDHV 211

Query: 363 FSFKYSPRLGTPGSNML--EQVD---ENVKAERLLCLQKKLREQQVSFND 407
             +  S   GTP +      +      +V+A R+   +K L+    +  +
Sbjct: 212 SVYPLSIEEGTPLAKQTAGAKTPWNGPDVQAGRMEEAEKILKAAGYARYE 261


>gi|331648804|ref|ZP_08349892.1| Fe-S oxidoreductase [Escherichia coli M605]
 gi|330909071|gb|EGH37585.1| putative Fe-S oxidoreductase family 2 [Escherichia coli AA86]
 gi|331042551|gb|EGI14693.1| Fe-S oxidoreductase [Escherichia coli M605]
          Length = 739

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 43/301 (14%), Positives = 96/301 (31%), Gaps = 66/301 (21%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARK---------------------- 216
           + I  GC   C+FC +    G  I SRS   +++E                         
Sbjct: 380 VNIMRGCFGGCSFCSITEHEGRIIQSRSEDSIINEIEAIRDTVPGFTGVISDLGGPTANM 439

Query: 217 --------LIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
                     +     ++ +  ++ +      D       +L     ++KG+ ++   + 
Sbjct: 440 YMLRCKSPRAEQTCRRLSCVYPDICSHM----DTNHEPTINLYRRARDLKGIKKILIASG 495

Query: 269 HPRDMSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRRH--TAYEYRQIIDRI-R 323
              D++    +   +L    +  YL +  +   +  L  M +    +   ++++ D   +
Sbjct: 496 VRYDIAVEDPRYIKELATHHVGGYLKIAPEHTEEGPLSKMMKPGMGSYDRFKELFDTYSK 555

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY--AQAFSFKYSPRLGT-------- 373
               +  +   FI   PG  D+D       + K  +   Q  +F  SP   +        
Sbjct: 556 QAGKEQYLIPYFISAHPGTRDEDMVNLALWLKKHRFRLDQVQNFYPSPLANSTTMYYTGK 615

Query: 374 -PGSNMLEQ-----VDENVKAERL-LCLQK--------KLREQQVSF-NDACVGQIIEVL 417
            P + +  +     V +  K  RL   L +         +R+   +      +G   + L
Sbjct: 616 NPLAKIGYKSEDVFVPKGDKQRRLHKALLRYHDPANWPLIRQALEAMGKKHLIGSRRDCL 675

Query: 418 I 418
           +
Sbjct: 676 V 676


>gi|297619528|ref|YP_003707633.1| Radical SAM domain-containing protein [Methanococcus voltae A3]
 gi|297378505|gb|ADI36660.1| Radical SAM domain protein [Methanococcus voltae A3]
          Length = 509

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 39/258 (15%), Positives = 90/258 (34%), Gaps = 23/258 (8%)

Query: 131 QTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLT-IQEGCDKF 189
           + YY     +      +  +   Y  +   +   I    +       AFL  I  GC + 
Sbjct: 189 EEYYIELSRIIDKIKKENTIKRIYPKKLGLDDYPIEQITHKDGAYGKAFLLEIGRGCPRR 248

Query: 190 CTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFS 248
           C FC+          R L  +     + +      ++ L+  +V+ ++            
Sbjct: 249 CKFCMAKCIYHPPRYRKLDDLKYLIDEGLKQTDADKVALIAPSVSDYK---------HVL 299

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
           +L   +      V++  ++     ++D L++        +  L +  ++GS R+  ++ +
Sbjct: 300 ELCQYIK--DKDVKISPSSLRADTLTDELLEILQ-----LKSLTIAPEAGSQRMRDTICK 352

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA----TMDLVDKIGYAQAFS 364
             +  +    +D I        +   ++VGF GET +D       T ++ +K+       
Sbjct: 353 DVSKEDILNAVD-ISKKFGINTVKLYYMVGFKGETKEDIEDIINLTKEIKEKVRKVDVSI 411

Query: 365 FKYSPRLGTPGSNMLEQV 382
               P+  TP  +    +
Sbjct: 412 NPMIPKPHTPFESHPFDI 429


>gi|157148582|ref|YP_001455901.1| hypothetical protein CKO_04409 [Citrobacter koseri ATCC BAA-895]
 gi|157085787|gb|ABV15465.1| hypothetical protein CKO_04409 [Citrobacter koseri ATCC BAA-895]
          Length = 723

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 45/320 (14%), Positives = 95/320 (29%), Gaps = 66/320 (20%)

Query: 161 ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARK--- 216
              +  D        +   + I  GC   C+FC +    G  I SRS   +++E      
Sbjct: 361 PHPAYGDSRIPAYEMIRFSINIMRGCFGGCSFCSITEHEGRIIQSRSEDSIINEIEAIRD 420

Query: 217 ---------------------------LIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSD 249
                                        +     ++ +  ++ +      D       +
Sbjct: 421 TVPGFTGVISDLGGPTANMYMLRCKSPRAEQTCRRLSCVYPDICSHM----DTNHEPTIN 476

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMN 307
           L     ++KG+ ++   +    D++    +   +L    +  YL +  +   +  L  M 
Sbjct: 477 LYRRARDLKGIKKILIASGVRYDIAVEDPRYIKELASHHVGGYLKIAPEHTEEGPLSKMM 536

Query: 308 RRH--TAYEYRQIIDRI-RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY--AQA 362
           +    +   ++++ D   +    +  +   FI   PG  D+D       + +  +   Q 
Sbjct: 537 KPGMGSYDRFKELFDLYSKQAGKEQYLIPYFISAHPGTRDEDMVNLALWLKRHRFRLDQV 596

Query: 363 FSFKYSPRL-------------GTPGSNMLE-QVDENVKAERL-LCLQK--------KLR 399
            +F  SP               G  G    +  V    K  RL   L +         +R
Sbjct: 597 QNFYPSPLANSTTMYYTGKNPLGKIGYKSEDVVVPRGDKQRRLHKALLRYHDPANWPLIR 656

Query: 400 EQQVSF-NDACVGQIIEVLI 418
           +          +G   E L+
Sbjct: 657 QALEEMGKKHLIGSRRECLV 676


>gi|308172965|ref|YP_003919670.1| oxygen-independent coproporphyrinogen III oxidase [Bacillus
           amyloliquefaciens DSM 7]
 gi|307605829|emb|CBI42200.1| oxygen-independent coproporphyrinogen III oxidase, putative
           [Bacillus amyloliquefaciens DSM 7]
 gi|328552610|gb|AEB23102.1| coproporphyrinogen III oxidase [Bacillus amyloliquefaciens TA208]
          Length = 500

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 43/251 (17%), Positives = 91/251 (36%), Gaps = 21/251 (8%)

Query: 129 GPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
           G        +L +        ++    + D+  +L+ V   Y  K  V+ ++ I   C  
Sbjct: 127 GLTKEEAHADLKKDYLIHDEKINLMQEIVDR--QLAAVPDLYRVKDEVSIYIGIPF-CPT 183

Query: 189 FCTFCVVPYTR-----GIEIS------RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG 237
            C +C  P        G   S        + ++ +  ++  D  V  I   G    +   
Sbjct: 184 KCAYCTFPAYAIQGQAGRVGSFLWGLHYEMQKIGEWLKQH-DIKVTTIYFGGGTPTSITA 242

Query: 238 KGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQS 297
           + +D     + +++ S   ++ +  +      P  +++  +       +    + +  QS
Sbjct: 243 EEMDL---LYEEMVRSFPNVENIREITVEAGRPDTITEEKLAVLNKYKI--DRISINPQS 297

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
             +  LK++ R HT  E  +     R    +  I+ D I+G PGE   +FR ++D  +K+
Sbjct: 298 YENETLKAIGRHHTVEETIEKYHLSRKHGMN-NINMDLIIGLPGEGTAEFRHSLDETEKL 356

Query: 358 GYAQAFSFKYS 368
                     S
Sbjct: 357 MPESLTVHTLS 367


>gi|289450473|ref|YP_003475007.1| coproporphyrinogen dehydrogenase HemZ [Clostridiales genomosp.
           BVAB3 str. UPII9-5]
 gi|289185020|gb|ADC91445.1| coproporphyrinogen dehydrogenase HemZ [Clostridiales genomosp.
           BVAB3 str. UPII9-5]
          Length = 552

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 42/241 (17%), Positives = 75/241 (31%), Gaps = 30/241 (12%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C   C +C      G      +    D   + ID    EI L    +         G   
Sbjct: 229 CPTRCLYCSFSTNEG------IDPPNDLINRYIDALSEEIELTFAQLPFKISTLYVGGGT 282

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDC-----------LIKAH-GDLDVLMPYLHL 293
                   ++ +  ++          +++             L   +      +     L
Sbjct: 283 PGILSAEQIARLGQIIHRNIEFIPGAELTFEAGRPDRVDQPALSAVYEAGFQKIC----L 338

Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
             Q+  DR L  +NR+HT  +     +  R   P   I+ D I+G PGET+ D R T+  
Sbjct: 339 NPQTFHDRTLALVNRQHTVEQLISTYEMARR-MPFTNINMDLILGLPGETEADMRYTLKK 397

Query: 354 VDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV----KAERLLCLQKKLREQQVSFNDAC 409
           ++ +       F          SN+  Q ++ +       R   L+    E +   N   
Sbjct: 398 LESLAPDS---FTLHSLAIKRASNLKLQAEDWLDVGAVHRRNKVLESLQEEGRALANRLW 454

Query: 410 V 410
           +
Sbjct: 455 L 455


>gi|288818078|ref|YP_003432426.1| radical SAM domain protein [Hydrogenobacter thermophilus TK-6]
 gi|288787478|dbj|BAI69225.1| radical SAM domain protein [Hydrogenobacter thermophilus TK-6]
 gi|308751680|gb|ADO45163.1| Radical SAM domain protein [Hydrogenobacter thermophilus TK-6]
          Length = 362

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 39/283 (13%), Positives = 100/283 (35%), Gaps = 36/283 (12%)

Query: 186 CDKFCTFCVVPYTR---GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG 242
           CDK CT+C     R                  +      V  + L               
Sbjct: 49  CDKNCTYCAFRRDRDITPRLYIPPEELAKSFMKLYNSKKVKGLFLSSGIFGHSEF----- 103

Query: 243 EKCTFSDLLYSLSEIKGLVRLRY---TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
                  ++  + +   ++R +Y      H + M    ++   +   +   + + +++  
Sbjct: 104 -------IMEKMIDTVKILRSKYDFKGYVHLKLMPGISLQTLEEAVKVADRVSINIETSK 156

Query: 300 DRILKSMNRRHTAYEYR----QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV- 354
           +  +K + +  +  +      + ++++     D +  +  +VG  GE D++    +  + 
Sbjct: 157 EERIKRIAKGKSILQDILPKMEAVNKLLQNYRDKSQITQMMVGVDGEKDEEIIRAVHFLN 216

Query: 355 DKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQII 414
                ++ +   + P  GTP  N   +    ++  RL  +   +R+      D       
Sbjct: 217 RHYRLSRIYFSAFFPVKGTPLENRPPESP--LREYRLYQVDFLIRDYHFELEDLK----- 269

Query: 415 EVLIEKH---GKEKGKLVGRS-PWLQSVVLNSKNHNIGDIIKV 453
            VL++ +    ++  +   ++ P L  V LN+ ++ I  +I+V
Sbjct: 270 RVLVDGNLPLDRDPKEAWAQANPELFPVELNTADYRI--LIRV 310


>gi|154253576|ref|YP_001414400.1| lipoyl synthase [Parvibaculum lavamentivorans DS-1]
 gi|171769671|sp|A7HXW0|LIPA_PARL1 RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|154157526|gb|ABS64743.1| lipoic acid synthetase [Parvibaculum lavamentivorans DS-1]
          Length = 321

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/192 (16%), Positives = 65/192 (33%), Gaps = 14/192 (7%)

Query: 178 AFLTIQ-EGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR 236
           A + I  + C + C+FC V       +   + +  + A  +   G+  + +   +    R
Sbjct: 78  ATMMIMGDTCTRACSFCNVKTGLPAPL--DVDEPENVANAVAKLGLRHVVITSVD----R 131

Query: 237 GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQ 296
               DG    F +++ ++        +   T         L K       +  +      
Sbjct: 132 DDLADGGAAHFVEVIEAIRRRSPGTTIEILTPDFLRKDGALEKVVAARPDVFNHNL---- 187

Query: 297 SGSDRILKSMNRRHTAYEY-RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
             +   L    R    Y +  +++ R++ + P I   S  +VG  GET ++    MD + 
Sbjct: 188 -ETVPRLYLNIRPGARYFHSLRLLQRVKEIDPTIFTKSGIMVGL-GETREEVLQVMDDMR 245

Query: 356 KIGYAQAFSFKY 367
                     +Y
Sbjct: 246 SAQIDFLTIGQY 257


>gi|167037067|ref|YP_001664645.1| biotin synthase [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|166855901|gb|ABY94309.1| Radical SAM domain protein [Thermoanaerobacter pseudethanolicus
           ATCC 33223]
          Length = 350

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 36/249 (14%), Positives = 78/249 (31%), Gaps = 32/249 (12%)

Query: 139 LLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKR--------GVTAFLTIQEGCDKFC 190
           L+E+      +   +       E  S +    +R R         +   +     C   C
Sbjct: 13  LIEKLETHHNIDKEELVTLLALEDPSKIYQAADRVRKKYVGDEVHLRGLIEFSNYCSNTC 72

Query: 191 TFCVVPYTRGIE----ISR-SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
            +C     RG        R    +++   +     G+  I L         G+    +  
Sbjct: 73  FYC---GLRGPNKTIKRYRMEPEEILQCVKYGASVGLKTIVLQS-------GEDKYFKIT 122

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
           T   ++  + ++   V L       +D    L KA  D         L +++ +  + + 
Sbjct: 123 TLCKIIEEIKKLDIAVTLSIGELSTKDY-AELKKAGADR------YLLRIETTNKELYQK 175

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           ++   +     + +  +R +     + +  +VG PG+T +     +    KI        
Sbjct: 176 LHPGMSYENRVRCLMDLREL--GYEVGTGSLVGLPGQTLEMLAQDLIFFKKIDADMLGIG 233

Query: 366 KYSPRLGTP 374
            + P   TP
Sbjct: 234 PFIPCENTP 242


>gi|296105440|ref|YP_003615586.1| coproporphyrinogen III oxidase [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295059899|gb|ADF64637.1| coproporphyrinogen III oxidase [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 457

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 42/248 (16%), Positives = 90/248 (36%), Gaps = 20/248 (8%)

Query: 173 KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNV 232
           +R ++ ++ I   C K C FC        +  +   Q +D   + I          G++V
Sbjct: 50  ERPLSLYVHIPF-CHKLCYFCGCNKIVTRQQHK-ADQYLDALEQEIL--HRAPLFTGRHV 105

Query: 233 NAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL----- 287
           +        G           +S +  L+R  +  +   ++S  +     +LDVL     
Sbjct: 106 SQLHW----GGGTPTYLNKAQISRLMALLRSNFHFNDDAEISIEVDPREIELDVLDHLRA 161

Query: 288 --MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS-DFIVGFPGETD 344
                L + VQ  +  + + +NR         +++  R +      ++ D I G P +T 
Sbjct: 162 EGFNRLSMGVQDFNKEVQRLVNREQDEEFIFALLNHAREI--GFTSTNIDLIYGLPKQTP 219

Query: 345 DDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQV 403
           + F  T+  V ++   +   F Y+       +   ++  D     ++L  LQ+ +     
Sbjct: 220 ESFAFTLKRVAELNPDRLSVFNYAHLPTLFAAQRKIKDADLPSAQQKLDILQETITSLTE 279

Query: 404 SFNDACVG 411
           +     +G
Sbjct: 280 TGYQ-FIG 286


>gi|253987658|ref|YP_003039014.1| coproporphyrinogen III oxidase [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253779108|emb|CAQ82268.1| oxygen-independent coproporphyrinogen III oxidase [Photorhabdus
           asymbiotica]
          Length = 457

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 39/249 (15%), Positives = 84/249 (33%), Gaps = 22/249 (8%)

Query: 173 KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNV 232
           +R ++ ++ I   C K C FC        +  + + Q +    + I              
Sbjct: 50  ERPLSLYIHIPF-CHKLCYFCGCNKLITRQKHK-VDQYLQLLEREIRERSKLF------S 101

Query: 233 NAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLH 292
                +   G           +S++ G++R  +      ++S  +     +LD++    H
Sbjct: 102 GRKVSQMHWGGGTPTYLDKDQISKLMGVLRDHFDFLPDAEISIEIDPREIELDMIDHLHH 161

Query: 293 -------LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDD 345
                  + VQ  +  + + +NR         ++ R R    + + S D I G P +T +
Sbjct: 162 QGFNRLSMGVQDFNKEVQRLVNREQDEDFIFALVARARETGFN-STSIDLIYGLPKQTSE 220

Query: 346 DFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM---LEQVDENVKAERLLCLQKKLREQQ 402
            F  T++ V  +   +   F Y+       +        +    +   L  LQ+ +    
Sbjct: 221 SFAFTLERVLALAPDRMSIFNYAHLPNLFAAQRKIKEHDLPSAEQK--LDILQQTIATLT 278

Query: 403 VSFNDACVG 411
            S     +G
Sbjct: 279 GSGYQ-FIG 286


>gi|238750771|ref|ZP_04612269.1| Oxygen-independent coproporphyrinogen III oxidase [Yersinia rohdei
           ATCC 43380]
 gi|238710915|gb|EEQ03135.1| Oxygen-independent coproporphyrinogen III oxidase [Yersinia rohdei
           ATCC 43380]
          Length = 459

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 43/246 (17%), Positives = 87/246 (35%), Gaps = 16/246 (6%)

Query: 173 KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEI--TLLGQ 230
           +R ++ ++ I   C K C FC        +  +   + +    K I           + Q
Sbjct: 52  QRPLSLYVHIPF-CHKLCYFCGCNKLVTRQQHK-ADEYLAVLEKEIRQRAALFAGRQVSQ 109

Query: 231 NVNAWRGKGLDGEKCTFSDLLYSLSE----IKGLVRLRYTTSHPRDMSDCLIKAHGDLDV 286
            ++   G      K   + L+  L E    + G  +       PR++   +I        
Sbjct: 110 -MHWGGGTPTYLNKTQITHLMNLLRENFDFLPGAEQSIEV--DPREIELDVIDHLRAEG- 165

Query: 287 LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDD 346
               L + VQ  +  + + +NR         +I R +++  + + + D I G P +T + 
Sbjct: 166 -FNRLSMGVQDFNKEVQRLVNREQDEDFIFALIARAKALGFN-STNIDLIYGLPKQTPES 223

Query: 347 FRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSF 405
           F  T+  V ++   +   F Y+       +   ++  D     +RL  LQ  +     S 
Sbjct: 224 FAFTLKRVAELNPDRLSVFNYAHLPTLFAAQRKIKDADLPSAEQRLDILQHTISFLTESG 283

Query: 406 NDACVG 411
               +G
Sbjct: 284 YQ-FIG 288


>gi|297559674|ref|YP_003678648.1| oxygen-independent coproporphyrinogen III oxidase [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
 gi|296844122|gb|ADH66142.1| oxygen-independent coproporphyrinogen III oxidase [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 410

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 45/245 (18%), Positives = 84/245 (34%), Gaps = 32/245 (13%)

Query: 186 CDKFCTFCVV-PYTRGIEISRSLSQVVDEARKLIDNGVCEI-----TLLGQNVNAWRGKG 239
           C   C +C    YT    +SR             D  + E+      L G+         
Sbjct: 39  CVTRCGYCDFNTYTAEELVSRD-GTATASRETYADQAIAEVALADRVLTGERPPVSTLFV 97

Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL-------- 291
             G     S     L  +   VR R+  +   +++        + + + P          
Sbjct: 98  GGGTPTLLS--AEDLGRVVTAVRERFGFTPDAELTTE-----ANPETVTPDYLARLREAG 150

Query: 292 ----HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDF 347
                  +QS  + +L+ + R HT     Q  +  R    +  ++ D I G PGE D+D+
Sbjct: 151 FTRVSFGMQSAREHVLRVLERGHTPGRPEQCAEWARRAGFE-HVNLDLIYGTPGEGDEDW 209

Query: 348 RATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE-----QVDENVKAERLLCLQKKLREQQ 402
           RA+++     G     ++      GT  +  +      + D++  A+R L  ++ L    
Sbjct: 210 RASLEAAVSAGPDHVSAYSLIVEEGTRLAARVRRGELAEPDDDTMADRYLMAEEVLTAAG 269

Query: 403 VSFND 407
            S  +
Sbjct: 270 FSAYE 274


>gi|33591365|ref|NP_879009.1| lipoyl synthase [Bordetella pertussis Tohama I]
 gi|33599163|ref|NP_886723.1| lipoyl synthase [Bordetella bronchiseptica RB50]
 gi|47117177|sp|Q7W0K8|LIPA_BORPE RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|47117183|sp|Q7WR00|LIPA_BORBR RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|33571007|emb|CAE40486.1| lipoic acid synthetase [Bordetella pertussis Tohama I]
 gi|33575209|emb|CAE30672.1| lipoic acid synthetase [Bordetella bronchiseptica RB50]
 gi|332380766|gb|AEE65613.1| lipoyl synthase [Bordetella pertussis CS]
          Length = 333

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 39/236 (16%), Positives = 80/236 (33%), Gaps = 21/236 (8%)

Query: 140 LERARFGKRVVDT-----DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCV 194
           +  A  G R  D      ++++    E  S  + G    +G   F+ + + C + C FC 
Sbjct: 55  VRAAAPGSRFYDIKRILREHNLHTVCEEASCPNIGECFGKGTATFMIMGDKCTRRCPFCD 114

Query: 195 VPYTRGIEISRSLS--QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLY 252
           V + R       L   +  + AR +    +  + +   +    R    DG    F + + 
Sbjct: 115 VGHGRPD----PLDTQEPENLARTIAALKLSYVVITSVD----RDDLRDGGAAHFVECIA 166

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV-LMPYLHLPVQSGSDRILKSMNRRHT 311
            + E     R+       R   D  +         +M +    V     R+ K       
Sbjct: 167 KVREYSPDTRIEVLVPDFRGRLDRALHILNSGPPDVMNHNLETV----PRLYKQARPGSD 222

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
                +++   + + P++   S  ++G  GETD++    M  + +         +Y
Sbjct: 223 YAHSLKLLAEFKKLHPEVPTKSGLMLGL-GETDEEILQVMRDMREHNVDMLTIGQY 277


>gi|167856204|ref|ZP_02478940.1| lipoyl synthase [Haemophilus parasuis 29755]
 gi|219871404|ref|YP_002475779.1| lipoyl synthase [Haemophilus parasuis SH0165]
 gi|254809190|sp|B8F679|LIPA_HAEPS RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|167852659|gb|EDS23937.1| lipoyl synthase [Haemophilus parasuis 29755]
 gi|219691608|gb|ACL32831.1| lipoyl synthase [Haemophilus parasuis SH0165]
          Length = 320

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/214 (15%), Positives = 71/214 (33%), Gaps = 10/214 (4%)

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           + +    E  S  +       G   F+ +   C + C FC V    G  +     +    
Sbjct: 61  HGLHSVCEEASCPNLHECFNHGTATFMIMGAICTRRCPFCDV--AHGKPLPLDKDEPKKL 118

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
           A  + D  +  + +   +    R    D     F++ +  +  +   +++       R  
Sbjct: 119 AETIQDMKLKYVVITSVD----RDDLPDRGAGHFAECVKEIRALNPGIKIEILVPDFRGR 174

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
            +  I+   +     P +         R+ K +          +++   ++V PDI   S
Sbjct: 175 VEQAIEILKENP---PDVFNHNLENVPRLYKEIRPGADYEWSLKLLKEFKAVFPDIPTKS 231

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
             +VG  GET+++    M  +   G       +Y
Sbjct: 232 GIMVGL-GETNEEILQVMQDLRDHGVTMLTLGQY 264


>gi|302670708|ref|YP_003830668.1| oxygen-independent coproporphyrinogen III oxidase HemN1
           [Butyrivibrio proteoclasticus B316]
 gi|302395181|gb|ADL34086.1| oxygen-independent coproporphyrinogen III oxidase HemN1
           [Butyrivibrio proteoclasticus B316]
          Length = 527

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/202 (18%), Positives = 70/202 (34%), Gaps = 18/202 (8%)

Query: 173 KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNV 232
           + G + ++ I   C   C +C          S  +          I     EI  + +N 
Sbjct: 199 ENGYSLYIGIPF-CPTTCLYCSFT-------SYPIGAYSKIVDDYISCLEKEIDYVAENF 250

Query: 233 NAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDC-------LIKAHGDL 284
                  +  G     +   + L  + G ++ +  TSH ++ +           +    +
Sbjct: 251 EGKTLDTIYIGGGTPTTLEPHQLERLIGYLQDKLDTSHVKEFTVESGRPDSITREKLKTM 310

Query: 285 DVL-MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGET 343
             + +  + +  Q+  D  L+ + RRHT  +        R    D  I+ D I+G PGET
Sbjct: 311 KKMGVTRISVNPQTMRDETLRLIGRRHTVAQLIDSFHMAREEGFD-NINMDIILGLPGET 369

Query: 344 DDDFRATMDLVDKIGYAQAFSF 365
            +D   TM  + K+        
Sbjct: 370 AEDVAYTMSEIKKLDPDDLTVH 391


>gi|94971513|ref|YP_593561.1| lipoyl synthase [Candidatus Koribacter versatilis Ellin345]
 gi|123079325|sp|Q1II13|LIPA_ACIBL RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|94553563|gb|ABF43487.1| lipoic acid synthetase [Candidatus Koribacter versatilis Ellin345]
          Length = 304

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/252 (14%), Positives = 78/252 (30%), Gaps = 17/252 (6%)

Query: 122 PIVNVVVGPQTYYRLPELL-ERARFGKRVVDT-----DYSVEDKFERLSIVDGGYNRKRG 175
            ++ + + P+     P  L  +A  G+   D        ++    E     + G      
Sbjct: 4   ELIQIDLEPRKPAPKPSWLRAKAPMGENYHDLKKLARGMNLHTVCESAQCPNIGECWNHK 63

Query: 176 VTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW 235
              F+ +   C + C FC VP  R   I     +    A  +   G+    +   N    
Sbjct: 64  TATFMLLGNLCTRRCGFCAVPKGRPEPI--DFDEPRRVAEAVATLGLNFAVVTSVN---- 117

Query: 236 RGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPV 295
           R     G    F+  +  + E K   R+       +   + L         ++ +    V
Sbjct: 118 RDDDNVGAAQVFAQTIEQIREQKPGCRVEVLIPDFQGNDESLRIVLAAKPEILNHNTETV 177

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
                R+ +++           ++ R + + P     +  +VG  GET ++       + 
Sbjct: 178 ----PRLYRAVRSGARYERTLNLLRRAKEINPAQVTKTGVMVGL-GETTEELLHVYRDLA 232

Query: 356 KIGYAQAFSFKY 367
           +         +Y
Sbjct: 233 RQNVDILTIGQY 244


>gi|78221830|ref|YP_383577.1| radical SAM family protein [Geobacter metallireducens GS-15]
 gi|78193085|gb|ABB30852.1| Radical SAM [Geobacter metallireducens GS-15]
          Length = 603

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 52/326 (15%), Positives = 99/326 (30%), Gaps = 55/326 (16%)

Query: 88  RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147
           R    +      ++       +AQ  GE +L  +P                        +
Sbjct: 223 RRYAEAFRLVTHEMNPGSGKALAQRHGERLLVCNP------------------PSVPLSE 264

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRS 206
             +D  Y++                   + + +T   GC   C FC + + +G  I SRS
Sbjct: 265 AEIDAVYALPFARTPHPSYKEPIPAYDQIKSSITTHRGCFGGCAFCAITHHQGKFIQSRS 324

Query: 207 LSQVVDEARKLIDN----------GVCEITLLGQNVNAWR-GKGLDGEKCTF-------- 247
              V +E  +++            G     + G    +   GK    E C F        
Sbjct: 325 EHSVTEEVGRMVKMPWFRGSVSDVGGPTANMYGLRCGSPDAGKNCRRESCLFPSVCRHLV 384

Query: 248 ------SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL--DVLMPYLHLPVQSGS 299
                 + LL  +  I G+  +  ++    D+ +      G+L    +   L +  +   
Sbjct: 385 THDRRAATLLRRVRAIPGVRHVAVSSGIRYDLLERQPGYFGELLAHHVGGLLKVAPEHTV 444

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIA----ISSDFIVGFPGETDDDFRATMDLVD 355
           D +   M +      + + + R R     +     +    + G PG T D        + 
Sbjct: 445 DVVTDLMRKPG-KEAFERFLARFRDESMRLGRKQYVIPYLMSGHPGCTLDHMVELALFLK 503

Query: 356 K--IGYAQAFSFKYSPRLGTPGSNML 379
           +  +   Q   F  +P  GT  + M 
Sbjct: 504 RHNMRVDQVQDF--TPTPGTLATCMY 527


>gi|86146589|ref|ZP_01064911.1| coproporphyrinogen III oxidase [Vibrio sp. MED222]
 gi|218708180|ref|YP_002415801.1| coproporphyrinogen III oxidase [Vibrio splendidus LGP32]
 gi|85835646|gb|EAQ53782.1| coproporphyrinogen III oxidase [Vibrio sp. MED222]
 gi|218321199|emb|CAV17149.1| Oxygen-independent coproporphyrinogen III oxidase [Vibrio
           splendidus LGP32]
          Length = 463

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 48/277 (17%), Positives = 88/277 (31%), Gaps = 29/277 (10%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C K C +C          S    + +D     I      +     N          G   
Sbjct: 68  CHKLCYYCGCNKVITRH-SHKADEYLDVIEHEIRQRASLL-----NGRKVTQLHFGGGTP 121

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL-------MPYLHLPVQSG 298
           TF      ++ + G++R  +  +   ++S  +     +LDVL          L + VQ  
Sbjct: 122 TF-LTKTQITRLMGILREEFNFTADAEISIEVDPREIELDVLDHLRNEGFNRLSIGVQDF 180

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS-DFIVGFPGETDDDFRATMDLVDKI 357
           +  + K +NR         ++ R   +      ++ D I G P +T   F  T+  V ++
Sbjct: 181 NKEVQKLVNREQDEEFIIAMVQRATEL--GFRSTNLDLIYGLPKQTQALFAETLKQVLEM 238

Query: 358 GYAQAFSFKYSPRLGTPGSNM---LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQII 414
              +   F Y+       +      E + E    E++  LQ  +     +     +G   
Sbjct: 239 KPGRLSVFNYAHMPQLFAAQRKIKDEDLPEA--KEKMAILQDTIETLTGAGYQ-FIGMDH 295

Query: 415 EVLIEKH---GKEKGKLVGRSPWLQSVVLNSKNHNIG 448
             L E      + +G L       Q      +   IG
Sbjct: 296 FALPEDELAVAQREGILH---RNFQGYTTQGEADLIG 329


>gi|300821601|ref|ZP_07101747.1| radical SAM domain protein [Escherichia coli MS 119-7]
 gi|300525739|gb|EFK46808.1| radical SAM domain protein [Escherichia coli MS 119-7]
          Length = 739

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 48/297 (16%), Positives = 98/297 (32%), Gaps = 58/297 (19%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDN--GVCEIT--LLGQNVNA 234
           + I  GC   C+FC +    G  I SRS   +++E   + D   G   +   L G   N 
Sbjct: 380 VNIMRGCFGGCSFCSISEHEGRIIQSRSEDSIINEIEAIRDTVPGFTGVISDLGGPTANM 439

Query: 235 WR----------------------GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
           +                          +D       +L     ++KG+ ++   +    D
Sbjct: 440 YMLRCKSPRAEQTCRRLSCVYPDICPHMDTNHEPTINLYRRARDLKGIKKILIASGVRYD 499

Query: 273 MSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRRH--TAYEYRQIIDRI-RSVRP 327
           ++    +   +L    +  YL +  +   +  L  M +    +   ++++ D   +    
Sbjct: 500 IAVEDPRYIKELATHHVGGYLKIAPEHTEEGPLSKMMKPGMGSYDRFKELFDTYSKQAGK 559

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGY--AQAFSFKYSPRLGT---------PGS 376
           +  +   FI   PG  D+D       + K  +   Q  +F  SP   +         P +
Sbjct: 560 EQYLIPYFISAHPGTRDEDMVNLALWLKKHRFRLDQVQNFYPSPLANSTTMYYTGKNPLA 619

Query: 377 NMLEQ-----VDENVKAERL-LCLQK--------KLREQQVSF-NDACVGQIIEVLI 418
            +  +     V +  K  RL   L +         +R+   +      +G   + L+
Sbjct: 620 KIGYKSEDVFVPKGDKQRRLHKALLRYHDPANWPLIRQALEAMGKKHLIGSRRDCLV 676


>gi|171058816|ref|YP_001791165.1| radical SAM domain-containing protein [Leptothrix cholodnii SP-6]
 gi|170776261|gb|ACB34400.1| Radical SAM domain protein [Leptothrix cholodnii SP-6]
          Length = 810

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/232 (17%), Positives = 76/232 (32%), Gaps = 32/232 (13%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDN--GVCEIT--LLGQNVNA 234
           + I  GC   CTFC +    G  I SRS   V+ E   + D   G   +   L G   N 
Sbjct: 414 VNIMRGCFGGCTFCSITEHEGRIIQSRSEDSVIKEIEDIRDKVKGFTGVVSDLGGPTANM 473

Query: 235 WR----------------------GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
           +R                       + L+ +      +     ++KG+ ++   +    D
Sbjct: 474 YRLGCKSPEIEAACRKPSCVYPGICQNLNTDHDALIHMYQRARQLKGIKKILIGSGLRYD 533

Query: 273 MSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRRH--TAYEYRQIIDRI-RSVRP 327
           ++    +   +L    +  YL +  +   D  L  M +    +   ++Q+ ++       
Sbjct: 534 LAIRSPEYIKELVQHHVGGYLKIAPEHTEDGPLSKMMKPGIGSYDRFKQLFEKYSAEAGK 593

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
              +   FI   PG  D+D       +   G+       + P      + M 
Sbjct: 594 KQYLIPYFIAAHPGTRDEDMMNLAVWLKHNGFRADQVQTFYPSPMATATAMY 645


>gi|150020667|ref|YP_001306021.1| radical SAM domain-containing protein [Thermosipho melanesiensis
           BI429]
 gi|149793188|gb|ABR30636.1| Radical SAM domain protein [Thermosipho melanesiensis BI429]
          Length = 515

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/207 (16%), Positives = 74/207 (35%), Gaps = 19/207 (9%)

Query: 170 YNRKRGVTAFLTIQEGCDK--FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITL 227
           + R   V   + +  GC++  +CTFC  P       SR +  +VDE   L   G+    L
Sbjct: 148 HPRYPDVICEVEVSTGCERKTYCTFCSEPILHPFFSSRPVKDIVDEVETLYKEGIKAFRL 207

Query: 228 LGQNVNAWRGKGLDG---EKCTFSDLLYSLSEI-KGLVRLRYTTSHPRDMSDCLIKAHGD 283
                    G   +         ++L   +  +   L  L    ++P  ++    ++   
Sbjct: 208 GRSANILAYGFDKNSSNVNVILINELYNGIRSVAPDLEVLHTDNANPGFIAKYYPESAKA 267

Query: 284 LDVLMPY------LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV-------RPDIA 330
           +++++ Y      L   V+S  + + K  N + +  +    +  +  +        P + 
Sbjct: 268 IEMIVRYNTPGDILSFGVESFDEVVRKKNNIQGSVKDIDFAVKLVNEIGGKRIDGVPKLL 327

Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKI 357
              +F+ G  GET   +      + + 
Sbjct: 328 PGLNFVFGLYGETKRSYEILYKKLREY 354


>gi|91787237|ref|YP_548189.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Polaromonas sp. JS666]
 gi|91696462|gb|ABE43291.1| Putative oxygen-independent coproporphyrinogen III oxidase
           [Polaromonas sp. JS666]
          Length = 394

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/209 (16%), Positives = 70/209 (33%), Gaps = 20/209 (9%)

Query: 186 CDKFCTFCVVPYTRGIEIS--RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
           C K C +C        E+S      + +D     ++  +  +   G+ V++    G  G 
Sbjct: 30  CLKKCPYC---DFNSHEVSGEMPEQRYLDALIADLEAALPLVW--GRTVHSIFIGG--GT 82

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL-------MPYLHLPVQ 296
              FS    ++  + G +R R       +++        + D         +  L + VQ
Sbjct: 83  PSLFS--PQAIDRLLGDIRARLRLEADCEITLEANPGTFEKDRFKAFRSAGVTRLSVGVQ 140

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
           S  DR LK++ R H   +    ++           + D +   PG+T D+    M     
Sbjct: 141 SFDDRHLKALGRVHDRAQAIAAVEEAAQAFD--TFNLDIMYALPGQTLDNLAQDMRQALA 198

Query: 357 IGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
           +       +  +    T  +     + E 
Sbjct: 199 LQPPHISIYHLTIEPNTYFAKFPPAIPEE 227


>gi|159904160|ref|YP_001551504.1| Fe-S oxidoreductase [Prochlorococcus marinus str. MIT 9211]
 gi|159889336|gb|ABX09550.1| Fe-S oxidoreductase [Prochlorococcus marinus str. MIT 9211]
          Length = 544

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 49/311 (15%), Positives = 96/311 (30%), Gaps = 49/311 (15%)

Query: 79  KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPE 138
           +++     I+   N   K   +   ++ G       E++ R  P   ++    +      
Sbjct: 140 ELWRNTKLIKKGLNEAKKHNMNARALIGGGAVSVFYEQLARSLPKGTII----SIGEGEP 195

Query: 139 LLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTA-------------------- 178
           LLE+   GK     D S +  F   S    G   ++  ++                    
Sbjct: 196 LLEKLLQGK-----DISQDRCFIIGSPPRPGLIHEQPKSSQKTACDYSYISSIWPQLNWY 250

Query: 179 --------FLTIQEGCDKFCTFCVVPYTRGIEISR-SLSQVVDEARKLIDNGVCEITLLG 229
                    +  + GC   C +CV     G ++    + +VV+E R+L D G+ +     
Sbjct: 251 LEGGDFYVGVQTKRGCPHNCCYCVYTVVEGKQVRINPVQEVVNEMRQLYDIGIRKFWFTD 310

Query: 230 QNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMP 289
                 R    D ++   + L   L+EI              ++   L          M 
Sbjct: 311 AQFIPARRYIEDAKQLLKAILEEGLTEI-----NWAAYIRADNLDAELASLMVATG--MN 363

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPG--ETDDDF 347
           Y  + + SGS  +++ M   +      +    +  V             F    ET +  
Sbjct: 364 YFEIGITSGSQELVRKMRMGYNLKTVLENCKLL--VNAGFRDHVSVNYSFNVIDETSETI 421

Query: 348 RATMDLVDKIG 358
           R T+    ++ 
Sbjct: 422 RQTIAYHKELE 432


>gi|242241358|ref|YP_002989539.1| coproporphyrinogen III oxidase [Dickeya dadantii Ech703]
 gi|242133415|gb|ACS87717.1| oxygen-independent coproporphyrinogen III oxidase [Dickeya dadantii
           Ech703]
          Length = 457

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 45/234 (19%), Positives = 86/234 (36%), Gaps = 17/234 (7%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC         ++R L +  +    L         L    V      G  G   
Sbjct: 62  CHRLCYFC----GCNKLVTRQLHKADEYLDVLEQEIRQRAPLFAGRVVTQMHWG--GGTP 115

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL-------MPYLHLPVQSG 298
           TF D    +S +  ++R  +  S   +MS  +     +LD+L          L + VQ  
Sbjct: 116 TFLD-ASQISRLMAVLREHFNLSPSAEMSLEIDPREIELDILDHLRAEGFNRLSMGVQDF 174

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           +  + + +NR         +I R +++    + + D I G P +T + F  T+  V ++ 
Sbjct: 175 NKEVQRLVNREQDESFIFALIARAKAL-GFASTNIDLIYGLPKQTPESFAFTLQRVAELQ 233

Query: 359 YAQAFSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVG 411
             +   F Y+       +   + Q D     ++L  LQ+ ++    +     +G
Sbjct: 234 PHRLSVFNYAHLPNLFAAQRKIRQEDLPSADQKLNILQQTIQMLTHAGYQ-FIG 286


>gi|434026|gb|AAA18918.1| lipoate synthase [Pelobacter carbinolicus DSM 2380]
 gi|1220438|gb|AAA91878.1| lipoat synthase [Pelobacter carbinolicus DSM 2380]
          Length = 310

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 39/215 (18%), Positives = 72/215 (33%), Gaps = 9/215 (4%)

Query: 153 DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVD 212
           D  +    E  S  + G   KRG   F+ + + C + C FC V    G   +    +   
Sbjct: 49  DLHLHTVCEEASCPNLGECFKRGTATFMIMGDVCTRRCPFCDV--AHGRPAALDTEEPGH 106

Query: 213 EARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
            A  +    +  + +        R    DG    F+  + S+ +     R+        D
Sbjct: 107 LADAIGAMKLKYVVITSVT----RDDLEDGGAAHFAQCIESIRK--KTRRVYKVEILVPD 160

Query: 273 MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAIS 332
               +  A  +L   +P +         R+          +E  +++ R +   P I   
Sbjct: 161 FRGHVDAALKNLGNCLPDVFNHNLETVPRLYAESRPGARYHESLRLLQRFKETYPGIPTK 220

Query: 333 SDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           S  ++G  GETD++    M  +   G       +Y
Sbjct: 221 SGLMLGL-GETDEEILEVMRDLRVHGCDMLTIGQY 254


>gi|22298735|ref|NP_681982.1| coproporphyrinogen III oxidase [Thermosynechococcus elongatus BP-1]
 gi|22294916|dbj|BAC08744.1| oxygen independent coprophorphyrinogen III oxidase 2
           [Thermosynechococcus elongatus BP-1]
          Length = 399

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 36/201 (17%), Positives = 70/201 (34%), Gaps = 12/201 (5%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLG------QNVNAWRGKG 239
           C + C +C  P T   E S +L+Q +   ++ +     EI          Q +    G  
Sbjct: 12  CRRRCFYCDFPITVVGE-SPTLAQSL--IQEYVAALCQEIAHTPTEGQPLQTIFFGGGTP 68

Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
                     LL +L    G+      +      +  L +    L + +  + L VQ+  
Sbjct: 69  SLVPPPYLGQLLEALDRQLGIALEAEISMEMDPGTFDLEQLQDYLRLGVNRVSLGVQAFD 128

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS-DFIVGFPGETDDDFRATMDLVDKIG 358
           D +L+   R H   +  + ++ I+     +A  S D I G P ++  D++ +++      
Sbjct: 129 DELLRLCGRSHDVADVERAVEIIQRA--GVANWSMDLISGLPQQSLADWQCSLEQAIAFK 186

Query: 359 YAQAFSFKYSPRLGTPGSNML 379
                 +       T  S   
Sbjct: 187 PTHLSIYDLIIEPKTVFSKRY 207


>gi|323495458|ref|ZP_08100535.1| lipoyl synthase [Vibrio brasiliensis LMG 20546]
 gi|323310381|gb|EGA63568.1| lipoyl synthase [Vibrio brasiliensis LMG 20546]
          Length = 321

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/182 (15%), Positives = 62/182 (34%), Gaps = 10/182 (5%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V    G  ++    +    A+ + D  +  + +   +    R    DG   
Sbjct: 94  CTRRCPFCDV--AHGRPLAPENDEPQKLAKTIQDMKLKYVVITSVD----RDDLRDGGAQ 147

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
            F+D    +  +   +R+       R   D  ++   D     P +       + R+ + 
Sbjct: 148 HFADCNREIRALNPNIRIETLVPDFRGRMDVALELLKDNP---PDVFNHNLETAPRLYRK 204

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
                      +++ + +   P+I   S  ++G  GET ++    +  +   G       
Sbjct: 205 ARPGANYKWSLELLKKFKEQHPEIPTKSGLMMGL-GETKEEIVEVLKDLRAHGVTMLTLG 263

Query: 366 KY 367
           +Y
Sbjct: 264 QY 265


>gi|167043196|gb|ABZ07904.1| putative Radical SAM superfamily protein [uncultured marine
           microorganism HF4000_ANIW141K23]
          Length = 692

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 44/251 (17%), Positives = 85/251 (33%), Gaps = 25/251 (9%)

Query: 176 VTAFLTIQEGCDKFCTFCVVPY-TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA 234
           +T  L    GC   CTFC           S  + +V  E + + ++          N ++
Sbjct: 201 LTPMLQTNRGCPFHCTFCTDGRDEVNKVNSFDIKRVQSEIQYIAEHVPK-------NTHS 253

Query: 235 WRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMP-YLH 292
                L+ G      ++  SL++I+               +           +     + 
Sbjct: 254 LHISDLNFGMYPRDIEICESLAKIQEKFNYPKYIKCTTGKNQKDKIIKAIKKLNKSLRVT 313

Query: 293 LPVQSGSDRILKSMNR-RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351
           + VQS    +L ++ R   +      +   I+    D+  +S+ I+G PGET  +   T+
Sbjct: 314 MSVQSLDPDVLNNIRRDNISVDHMLALYPAIKEA--DLQTTSEVILGLPGETYSNHIQTL 371

Query: 352 DLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVG 411
             + +    +          G   S M   + E  K   +     K R  Q  F +   G
Sbjct: 372 RDLIRAKMDEIVVHTCMLLDG---SEM--NLPEERKKWGMKT---KFRALQRDFAELSSG 423

Query: 412 QII----EVLI 418
           + +    EV++
Sbjct: 424 KKVIEYEEVVV 434


>gi|126697044|ref|YP_001091930.1| lipoyl synthase [Prochlorococcus marinus str. MIT 9301]
 gi|126544087|gb|ABO18329.1| lipoic acid synthetase [Prochlorococcus marinus str. MIT 9301]
          Length = 297

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/208 (15%), Positives = 68/208 (32%), Gaps = 11/208 (5%)

Query: 166 VDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEI 225
            + G     G   FL +  GC + C +C + + R        ++    A  +    +  +
Sbjct: 47  PNIGECFASGTATFLIMGPGCTRACPYCDIDFDRSK-RDLDPTEPYRLAEAVFRMKLKHV 105

Query: 226 TLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLD 285
            +   N    R    DG    F   ++ + E      +             L K      
Sbjct: 106 VITSVN----RDDLEDGGASQFFQCVHQIREKSPETTIELLIPDLCGNWKALEKVLDSNP 161

Query: 286 VLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDD 345
            ++ +    +++ S    K +  +       +++ R R   P I   S F++G  GE D+
Sbjct: 162 NVLNH---NIETVSSLY-KKVRPQGKYERTLELLKRTRDYSPKIYTKSGFMLGL-GEKDE 216

Query: 346 DFRATMDLVDKIGYAQAFSFKY-SPRLG 372
           +  + +  +           +Y SP   
Sbjct: 217 EVLSLLKDLKSNFVDIVTIGQYLSPGPN 244


>gi|325845774|ref|ZP_08169038.1| coproporphyrinogen dehydrogenase HemZ [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
 gi|325481912|gb|EGC84943.1| coproporphyrinogen dehydrogenase HemZ [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
          Length = 431

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 44/238 (18%), Positives = 87/238 (36%), Gaps = 23/238 (9%)

Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNR----KRGVTAFLTIQEGCDKFCTF 192
           P  L +    + + +     ++K   L  V    +R          ++ I   C + C +
Sbjct: 84  PSKLLKNHSLEDLKNIYKVSDEKINLLKSVKESQDRLKFNPNSFNLYINIPF-CPQRCKY 142

Query: 193 CVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLY 252
           C  P          +S +VD+  + +D  + EI   G N++        G     +  L 
Sbjct: 143 CSYPTI--------VSNIVDK-NQYVDFLLKEIK--GINLDKKLDTIYLGGGTPSNLPLK 191

Query: 253 SLSEIKGLVRLRYTTSHP-----RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307
            L  I  LV  ++T         R+ +    K     +  +  + L  Q+ S  +L+++N
Sbjct: 192 DLDRILSLVNEKFTFDEFTLEAGREDTLDFEKLDLFKEKNVGRISLNPQTFSKNVLENVN 251

Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           R      + +I    + +     I+ DFI+G  GE  + FR   +++  +        
Sbjct: 252 RPIDFENFIKIYQYAKDL--GFVINMDFIIGLFGENRESFRKNFEILKDLKPDNLTFH 307


>gi|187927286|ref|YP_001897773.1| lipoyl synthase [Ralstonia pickettii 12J]
 gi|238691830|sp|B2UE01|LIPA_RALPJ RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|187724176|gb|ACD25341.1| lipoic acid synthetase [Ralstonia pickettii 12J]
          Length = 333

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/208 (15%), Positives = 74/208 (35%), Gaps = 12/208 (5%)

Query: 161 ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN 220
           E  S  + G    +G   F+ + + C + C FC V + R   +   +++  + A+ + + 
Sbjct: 81  EEASCPNIGECFGKGTATFMIMGDKCTRRCPFCDVGHGRPDPL--DVNEPENLAKTIAEL 138

Query: 221 GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKA 280
            +  + +   +    R    DG    + D +     +    R+       R   +  +  
Sbjct: 139 KLNYVVITSVD----RDDLRDGGAQHYVDCISRTRALSPATRIEVLVPDFRGRLEKALDI 194

Query: 281 HGDLDV-LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGF 339
             +    +M +    V     R+ K            +++   ++  P++   S  +VG 
Sbjct: 195 LQECPPDVMNHNLETV----PRLYKQARPGADYAHSLKLLKDFKARNPNVPTKSGLMVGL 250

Query: 340 PGETDDDFRATMDLVDKIGYAQAFSFKY 367
            GETD++    M  + +         +Y
Sbjct: 251 -GETDEEILEVMRDMREHDIDMLTIGQY 277


>gi|302874297|ref|YP_003842930.1| oxygen-independent coproporphyrinogen III oxidase [Clostridium
           cellulovorans 743B]
 gi|307689438|ref|ZP_07631884.1| coproporphyrinogen III oxidase [Clostridium cellulovorans 743B]
 gi|302577154|gb|ADL51166.1| oxygen-independent coproporphyrinogen III oxidase [Clostridium
           cellulovorans 743B]
          Length = 373

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/213 (17%), Positives = 78/213 (36%), Gaps = 21/213 (9%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLG----QNVNAWRGKGLD 241
           C   C +C      G E         +   + ID+ + E++L      QN+    G    
Sbjct: 11  CKNKCLYCDFKSFEGKE---------NLMEQYIDSLIVEMSLRVSEKVQNIFIGGGTPTF 61

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTS-HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300
            ++     L  ++ +I+      +T   +P   +   +    D+   +  L + +Q+  +
Sbjct: 62  LKEEHIKSLGEAIKKIQKAENYEFTVEGNPGTFTREKLLLFKDMG--VNRLSIGLQAWQN 119

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
            +LK + R H   E+       R +  +  I+ D + G P +T D +  T++ V  +   
Sbjct: 120 SLLKVLGRIHNNDEFIASYKLAREIGFN-NINIDLMFGLPNQTIDMWMDTLEKVVDLNPE 178

Query: 361 QAFSFKYSPRLGTPGSNMLEQ----VDENVKAE 389
               +      GT   ++ E+    V    +  
Sbjct: 179 HLSIYSLIIEEGTSFYDLNEKGKLLVPTEEEER 211


>gi|291566370|dbj|BAI88642.1| radical SAM domain protein [Arthrospira platensis NIES-39]
          Length = 546

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 62/273 (22%), Positives = 106/273 (38%), Gaps = 31/273 (11%)

Query: 177 TAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR 236
              + +   C + C FC+  Y      + +L   +  A          + LLG +V    
Sbjct: 225 IYMVEVVRSCPEMCRFCLASYLTLPFRTANLESSLIPAINRGLTVTKRLGLLGASVTQH- 283

Query: 237 GKGLDGEKCTFSDLLYSLSEIK-GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPV 295
                     F++LL  LS+ +   VRL   +     ++  L       D     + + V
Sbjct: 284 --------PEFNELLDYLSQPEYDDVRLSLASVRTNTVTVKLAATLAKRDT--RSITIAV 333

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI-AISSDFIVGFPGETDDDFRATMDLV 354
           +SGSDR+ K +N++    E  Q    I +    + ++    +VG PGE  +D  AT+ ++
Sbjct: 334 ESGSDRLRKIINKKLDNDEIIQAA--INAKAGGLKSLKLYGMVGIPGEESEDLDATVAMM 391

Query: 355 DKIGYA------QAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFN-D 407
            +I  A            + P+  TP            K  RL  L+KKLR   + F  +
Sbjct: 392 QEIKKAAPGLRLTLGCSTFVPKSHTP-FQWFGVNPAAEK--RLKFLEKKLRSNGMDFRPE 448

Query: 408 ACVGQIIEVLIEKHGK------EKGKLVGRSPW 434
           +    +I+ LI +  +      EK +  G SP 
Sbjct: 449 SYRWSVIQALISRGDRRLSYLLEKVRHYGDSPG 481


>gi|238918556|ref|YP_002932070.1| hypothetical protein NT01EI_0606 [Edwardsiella ictaluri 93-146]
 gi|238868124|gb|ACR67835.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
          Length = 301

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 36/176 (20%), Positives = 69/176 (39%), Gaps = 12/176 (6%)

Query: 188 KFCTFCVV-PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT 246
             CTFC V  +       RS+++ ++   + ++     +                 E C 
Sbjct: 43  GGCTFCNVASFADEQMQRRSIAEQLEAQARKVNRARRYLAYF------QAYTSTYAEVCI 96

Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV--LMPYLHLPVQSGSDRILK 304
             D+     +   +V L    + P  + + ++    +        +L L +QS S++ L+
Sbjct: 97  LRDMYREALQQADMVGL-CVGTRPDCVPESVLDLLAEYREQGYEVWLELGLQSASEKTLR 155

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
            +NR H    Y++     R+    + + S  IVG PGET  D  +T+  V + G  
Sbjct: 156 RINRGHDFACYQRTTRAARAR--GLKVCSHLIVGLPGETQADCLSTLQRVVETGVE 209


>gi|271964153|ref|YP_003338349.1| lipoyl synthase [Streptosporangium roseum DSM 43021]
 gi|270507328|gb|ACZ85606.1| Lipoyl synthase [Streptosporangium roseum DSM 43021]
          Length = 309

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 38/216 (17%), Positives = 67/216 (31%), Gaps = 18/216 (8%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC +   +  E      +    A  +   G+   T+ G      R    DG   
Sbjct: 81  CTRRCDFCQIDTGKPKE--YDTDEPRRVAESVRQMGLNYATVTGV----ARDDLPDGGAW 134

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
            +++    +  +     +             L +       +  +    V     RI K 
Sbjct: 135 LYAETARQIHALLPGCGVELLVPDFNGDQGQLEEVFSAAPEVFAHNVETV----PRIFKR 190

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           +           +I + R     +   S+ I+G  GE  ++    M  + + G       
Sbjct: 191 IRPGFRYERSLGVITKAREA--GLVTKSNLILGM-GEDREEVVQAMRDLHEAGCDLLTVT 247

Query: 366 KYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQ 401
           +Y  R  TP       VD  VK E  + LQK+    
Sbjct: 248 QYL-RP-TP---RHHPVDRWVKPEEFVELQKEAEAI 278


>gi|75908440|ref|YP_322736.1| coproporphyrinogen III oxidase [Anabaena variabilis ATCC 29413]
 gi|75702165|gb|ABA21841.1| coproporphyrinogen III oxidase, anaerobic [Anabaena variabilis ATCC
           29413]
          Length = 396

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 43/210 (20%), Positives = 79/210 (37%), Gaps = 10/210 (4%)

Query: 177 TAFLTIQEGCDKFCTFCVVPYT-----RGIEISRSLSQVVDEARKLIDNGVCEITLLGQN 231
           +A++ I   C + C +C  P       +  E S ++S  VD   + I         L Q 
Sbjct: 12  SAYVHIPF-CRRRCFYCDFPIFVVGDRQRGETSVTISGYVDTLCEEIAITPVFGQPL-QT 69

Query: 232 VNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL 291
           +    G          + +L +L +  G+V     +      +  L    G   V +  +
Sbjct: 70  IFFGGGTPSLLSTAQLAQILGTLDKRFGIVPDAEISMEIDPGTFDLAHIQGYRSVGVNRV 129

Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV-RPDIAISSDFIVGFPGETDDDFRAT 350
            L VQ+  + +LK   R H+  +    ID I  V  P+ +I  D I G P ++ D ++ +
Sbjct: 130 SLGVQAFQEELLKLAGRSHSLKDIFAAIDLIHQVEIPEFSI--DLISGLPHQSLDQWQDS 187

Query: 351 MDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++    I       +  +   GT      +
Sbjct: 188 LETAVNIAPTHISIYDLTIEPGTAFGRYYK 217


>gi|297194387|ref|ZP_06911785.1| radical SAM domain-containing protein [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|297152250|gb|EDY64862.2| radical SAM domain-containing protein [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 681

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 72/419 (17%), Positives = 123/419 (29%), Gaps = 74/419 (17%)

Query: 52  GYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVV----VAG 107
           G+   N    AD I    C +     + V      IR  K      G + ++        
Sbjct: 150 GHAAFNPEPIADFI---DCAVIGDGEQAVLDMTEIIRAWKAEGRPGGREEVLFRLAKTGN 206

Query: 108 CVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVD 167
                  +        +  VV  ++                V+D D     K   + + +
Sbjct: 207 VYVPRFYDVEYLPDGRIGRVVPNRSGVPWR------VSKHTVMDLDEWPYPKQPLVPLAE 260

Query: 168 GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEIT 226
             + R       + I  GC + C FC           RS++ + D   K +   G  E+ 
Sbjct: 261 TVHERMS-----VEIFRGCTRGCRFCQAGMITRPVRERSITGIGDMVEKGLKATGFEEVG 315

Query: 227 LLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV 286
           LL     +       G+        Y   +I     L   ++     +  L         
Sbjct: 316 LLS---LSSADHSEIGDIAKGLADRYEEDKIG----LSLPSTRVDAFNVDLANELTRNGR 368

Query: 287 LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR-----IRSVRPDIAISSDFIVGFPG 341
               L    + GS+R+ K +N+  +  +  + +        R V+        F+ G P 
Sbjct: 369 -RSGLTFAPEGGSERMRKVINKMVSEEDLIRTVATAYGNGWRQVK------LYFMCGLPT 421

Query: 342 ETDDDFRATMDLV-------------DKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           ETD+D     D+              + I         + P+  TP      Q+      
Sbjct: 422 ETDEDVLQIGDMAVNVIAKGREVSGSNDIRCT-VSIGGFVPKPHTP-FQWAPQLSAEETD 479

Query: 389 ERLLCLQKKLR---------------------EQQVSFNDACVGQIIEVLIEKHGKEKG 426
            RL  L+ K+R                     E  +S  D  VG +I  + E  G+  G
Sbjct: 480 ARLEKLRDKIRGDKKYGRSIGFRYHDGKPGIVEGLLSRGDRRVGAVIRAVYEDGGRFDG 538


>gi|258592027|emb|CBE68332.1| conserved protein of unknown function [NC10 bacterium 'Dutch
           sediment']
          Length = 503

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 50/314 (15%), Positives = 97/314 (30%), Gaps = 43/314 (13%)

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPI-VNVVVGPQTYYRLPELLER 142
           L  +  L     +      V V G  A    +E+L  +   ++ +V  +     P LLE 
Sbjct: 74  LPEVVELAKETKRLLPACFVFVGGHSASFIPQELLDHAEGAIDCIVRGEGEPITPPLLEA 133

Query: 143 ARFG-----------KRVVDTDYSVEDKFERLSIVDGGYNRKRGVT------AFLTIQEG 185
            + G           + V      + D    L   D    R +         A +    G
Sbjct: 134 IQDGGLETLPGVVTARGVGPPPLMLHDLDRTLPARDLARRRHKYFIGVLDPCASIEFTRG 193

Query: 186 CDKFCTFCVVPYTRGIE-ISRSLSQV---VDEARKLIDNGVCEITLLGQNVNAWRGKGLD 241
           C   C+FC      G      S   V   +   ++     V ++  +        G+ ++
Sbjct: 194 CPWDCSFCSAWTFYGRSYRKVSPEVVGEDLARIQEPNAFIVDDVAFIHPEDGMAIGREIE 253

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL-MPYLHLPVQSGSD 300
                              +R +Y      D+     +       L + Y+ L +++   
Sbjct: 254 RRG----------------IRKQYYLETRCDVLLRNQEVFAYWKRLGLRYMFLGLEALDA 297

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
             LK++ +R T  E  Q ++  R +     ++ + I    G  ++ FR   +    +   
Sbjct: 298 EGLKAIRKRATPSENFQALEVARKL--GFTVALNIIAD-SGWDEERFRVIREWAAGVP-E 353

Query: 361 QAFSFKYSPRLGTP 374
                  +P  GT 
Sbjct: 354 IVHVTVNTPYPGTE 367


>gi|262191087|ref|ZP_06049293.1| lipoate synthase [Vibrio cholerae CT 5369-93]
 gi|262033019|gb|EEY51551.1| lipoate synthase [Vibrio cholerae CT 5369-93]
          Length = 303

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/211 (14%), Positives = 70/211 (33%), Gaps = 12/211 (5%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V    G   +    +    A+ + D  +  + +   +    R    DG   
Sbjct: 76  CTRRCPFCDV--AHGRPNAPEAEEPKKLAQTIHDMKLKYVVITSVD----RDDLRDGGAQ 129

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
            F+D    +  +   +++       R   +  ++A  D     P +       + R+ + 
Sbjct: 130 HFADCNREIRALNPHIKIETLVPDFRGRMEVALEALKDNP---PDVFNHNLETAPRLYRK 186

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           +          +++ + +   P +   S  ++G  GET ++    +  +   G       
Sbjct: 187 VRPGANYKWSLELLRQFKEQHPHVPTKSGLMMGL-GETKEEIVEVLKDLRAHGVTMLTLG 245

Query: 366 KYSP--RLGTPGSNMLEQVDENVKAERLLCL 394
           +Y    R   P    +   + +   E  L L
Sbjct: 246 QYLAPSRHHLPVERYVPPAEFDELKEIALEL 276


>gi|153954022|ref|YP_001394787.1| hypothetical protein CKL_1397 [Clostridium kluyveri DSM 555]
 gi|219854636|ref|YP_002471758.1| hypothetical protein CKR_1293 [Clostridium kluyveri NBRC 12016]
 gi|146346903|gb|EDK33439.1| Hypothetical protein CKL_1397 [Clostridium kluyveri DSM 555]
 gi|219568360|dbj|BAH06344.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 357

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/227 (13%), Positives = 71/227 (31%), Gaps = 9/227 (3%)

Query: 173 KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNV 232
           K  +       EGC   C FC      G E    ++ V       +       + +  + 
Sbjct: 4   KHYIIPIFVPHEGCPHSCIFCDQRIITGNEQKVDVNFVRRTIEDYLKTIKRSTSKVEVSF 63

Query: 233 NAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLH 292
                  +  +K           + +G +     ++ P  + + ++    +    +  + 
Sbjct: 64  FGGTFTAIPIDKQRELLGAAKEYKDEGYIDYIRLSTRPDYIDNYILDNLREYS--VDIIE 121

Query: 293 LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352
           L +QS    +L    R H++ + +     ++       +    +VG P +T +    T+ 
Sbjct: 122 LGIQSLDSDVLLKSERGHSSEDVKYASYLVKKY--GFVLGHQIMVGLPCDTFEKDMETVR 179

Query: 353 LVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLR 399
               +       +      GT   NM ++     K  R   L + + 
Sbjct: 180 NSIGMKPDIYRIYPALVIKGTAMENMYKK-----KQYRPYRLSEAVD 221


>gi|86157123|ref|YP_463908.1| radical SAM family protein [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85773634|gb|ABC80471.1| Radical SAM [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 898

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 36/228 (15%), Positives = 74/228 (32%), Gaps = 28/228 (12%)

Query: 179 FLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLI-DNGVCEITLLGQNVNAWRG 237
            + +Q GC + C FC V         R   QV+  A   +  +G  E+ LL  +   +  
Sbjct: 271 PIELQRGCTRGCRFCQVGMITRPTRQRDPKQVLALAETGLRASGYEEVGLLSLSSGDY-- 328

Query: 238 KGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDC-LIKAHGDLDVLMPYLHLPVQ 296
                       L   L+  +G        S   +  +  L +    +        L  +
Sbjct: 329 ------GALNGLLDDFLARWEGERIAMSLPSLRTETMNEALAQKIARIRK--TGFTLAPE 380

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
           + ++R+   +N+ +   +  + ++ I      + +   F++G P E D+D  A  +L  +
Sbjct: 381 AATERMRAVINKGNREEDLLRAVESIFGNGWSL-LKLYFMIGLPEERDEDVVAIAELAKR 439

Query: 357 I--------------GYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER 390
                                +  + P+  TP       +       R
Sbjct: 440 CLAAARRVLPKGEGSPAIHLGASTFVPKPFTP-FQWEPMIPPEETRRR 486


>gi|300692705|ref|YP_003753700.1| lipoyl synthase (lipoic acid synthase or lipoate synthase, sulfur
           insertion protein lipA (lip-syn, LS) [Ralstonia
           solanacearum PSI07]
 gi|299079765|emb|CBJ52441.1| Lipoyl synthase (Lipoic acid synthase or Lipoate synthase, Sulfur
           insertion protein lipA (Lip-syn, LS) [Ralstonia
           solanacearum PSI07]
          Length = 333

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 36/210 (17%), Positives = 71/210 (33%), Gaps = 16/210 (7%)

Query: 161 ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS--QVVDEARKLI 218
           E  S  + G    +G   F+ + + C + C FC V + R       L   +  + A+ + 
Sbjct: 81  EEASCPNIGECFGKGTATFMIMGDKCTRRCPFCDVGHGRPD----PLDANEPENLAKTIA 136

Query: 219 DNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLI 278
              +  + +   +    R    DG    + D +    E+    R+       R   +  +
Sbjct: 137 QLRLNYVVITSVD----RDDLRDGGAQHYVDCISRTRELSPATRIEVLVPDFRGRLEKAL 192

Query: 279 KAH-GDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIV 337
                    +M +    V     R+ K            +++   ++  PDI   S  +V
Sbjct: 193 DILQACPPDVMNHNMETV----PRLYKQARPGADYAHSLKLLKDFKARNPDIPTKSGLMV 248

Query: 338 GFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           G  GETD++    M  + +         +Y
Sbjct: 249 GL-GETDEEILQVMRDMREHDIDMLTIGQY 277


>gi|145296247|ref|YP_001139068.1| coproporphyrinogen III oxidase [Corynebacterium glutamicum R]
 gi|140846167|dbj|BAF55166.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 351

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 36/168 (21%), Positives = 65/168 (38%), Gaps = 17/168 (10%)

Query: 254 LSEIKGLVRLRYTTSHPRDMS---------DCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304
           L+ + G VR  +  +   +++                 +       + L +QS S  +LK
Sbjct: 49  LARVLGAVRNTFGIADGAEVTTESNPESTSPEFFDGLREAG--YNRISLGMQSASSSVLK 106

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
            ++R HT           R    +  ++ D I G P ETDDD R T+D V +       +
Sbjct: 107 VLDRTHTPGRPVAAAKEARRAGFE-HVNLDMIYGTPTETDDDVRKTLDAVLEANVDHVSA 165

Query: 365 FKYSPRLGTPGSNMLEQ-----VDENVKAERLLCLQKKLREQQVSFND 407
           +      GT  +  + +      DE+V A+R   +  +LR     + +
Sbjct: 166 YSLIVEDGTAMARKVRKGELPAPDEDVYADRFELIDARLRSAGFDWYE 213


>gi|25246556|gb|AAN72321.1| coproporphyrinogen III oxidase [Corynebacterium glutamicum]
          Length = 330

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 36/168 (21%), Positives = 65/168 (38%), Gaps = 17/168 (10%)

Query: 254 LSEIKGLVRLRYTTSHPRDMS---------DCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304
           L+ + G VR  +  +   +++                 +       + L +QS S  +LK
Sbjct: 28  LARVLGAVRNTFGIADGAEVTTESNPESTSPEFFDGLREAG--YNRISLGMQSASSSVLK 85

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
            ++R HT           R    +  ++ D I G P ETDDD R T+D V +       +
Sbjct: 86  VLDRTHTPGRPVAAAKEARRAGFE-HVNLDMIYGTPTETDDDVRKTLDAVLEANVDHVSA 144

Query: 365 FKYSPRLGTPGSNMLEQ-----VDENVKAERLLCLQKKLREQQVSFND 407
           +      GT  +  + +      DE+V A+R   +  +LR     + +
Sbjct: 145 YSLIVEDGTAMARKVRKGELPAPDEDVYADRFELIDARLRSAGFDWYE 192


>gi|57640102|ref|YP_182580.1| hypothetical protein TK0167 [Thermococcus kodakarensis KOD1]
 gi|57158426|dbj|BAD84356.1| hypothetical protein, conserved, radical SAM superfamily
           [Thermococcus kodakarensis KOD1]
          Length = 535

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 56/332 (16%), Positives = 107/332 (32%), Gaps = 36/332 (10%)

Query: 73  REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT 132
                 K    + RI  ++    K    L+V   G       +E   R  I +VV+G + 
Sbjct: 119 TNYTKVKFLELVERINRIREG-KKLDFKLVVGGPGAWQVDFRKEERERLKIDHVVIG-EV 176

Query: 133 YYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTF 192
            +   EL      G            + E +  +             + +  GC + C F
Sbjct: 177 DHVAGELFREIESGSADETIFIKGWPRVEHIPTIVAP-----SYKGLVEVMRGCGRGCRF 231

Query: 193 CVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLY 252
           C  P  R       L ++ +E R  +  G+    L  ++V  +R +     K  F     
Sbjct: 232 CE-PNLRVA-RYMPLERIEEEIRLNVSAGIDHAWLHSEDVFLYRVED----KKNFYPNAE 285

Query: 253 SLSEIKGLVRLRYTTSHPRD-----------MSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
           ++ E+  + R      +P             M + + +           + +  ++ S R
Sbjct: 286 AVVELFEIARRYTKNVNPTHGAVAGALAVPGMIEEISRIVDAGPAHWIGIQVGFETASPR 345

Query: 302 IL-KSMNRRHTAYEYRQIIDRIRS-----VRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
           ++ K MN +   +   +    + +      +     +   I+G PG+TDDD   T  L+ 
Sbjct: 346 LIGKYMNNKMKPFSPEEWPWVLLNGTYVLNKNYWFPAYTTILGLPGDTDDDEIMTAQLII 405

Query: 356 KI------GYAQAFSFKYSPRLGTPGSNMLEQ 381
            +             F  +P    P   +  Q
Sbjct: 406 TMERELEEKLGNRAHFTVTPLAFVPMGLLKNQ 437


>gi|304314226|ref|YP_003849373.1| oxidoreductase [Methanothermobacter marburgensis str. Marburg]
 gi|302587685|gb|ADL58060.1| predicted oxidoreductase [Methanothermobacter marburgensis str.
           Marburg]
          Length = 522

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 57/299 (19%), Positives = 108/299 (36%), Gaps = 36/299 (12%)

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNR---KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           +RV+  D        R  +      R     G +  L +  GC + C FC+  Y    + 
Sbjct: 173 ERVIVEDMDRACHPVRQIVPVTEDKRMVPSLGRSFLLGVSRGCSRGCRFCMSGYLYRPKR 232

Query: 204 SRSLSQVVDEARK-LIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
             SL +++D A +     G  +++L+G             +     +L   L ++  +V 
Sbjct: 233 ETSLPRLLDVAERGRHATGYSKVSLIG---------AAASDYSRIDELSSRLVDMDFMVS 283

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +         +S  L+     L+  +  + +  +S      K       +  +++  + I
Sbjct: 284 MPSLRIES--LSAHLMDTL--LEGGLKTVTVAPESTLKLRRKLNKPISDSMVFKKTEEAI 339

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS-----PRLGTPGSN 377
           +       +   F+ G PGE+++D +    L+  +   +     +S     P+  TP   
Sbjct: 340 KK---GFRVKMYFLTGVPGESEEDLKDLTRLIRGLHEIRRGMVTFSINPLIPKPHTPLQW 396

Query: 378 MLEQVDENVKAERLLCLQKKLREQQ----VSFNDACVGQIIEVLIEKHGKEKGKLVGRS 432
           M   +       R+    K LR+      V F     G I  VL    G E GKL+ R+
Sbjct: 397 MEYDM------RRMKRKIKLLRKLTGGVPVKFGSPLSGLIQYVLSTG-GPETGKLIERA 448


>gi|301779595|ref|XP_002925215.1| PREDICTED: lipoyl synthase, mitochondrial-like [Ailuropoda
           melanoleuca]
          Length = 373

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 67/186 (36%), Gaps = 15/186 (8%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLS--QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
           C + C FC V   R       L   +  + A+ + + G+  + L   +    R    DG 
Sbjct: 137 CTRGCRFCSVKTARNP---PPLDASEPYNTAKAIAEWGLDYVVLTSVD----RDDMPDGG 189

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPR-DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
              F+  +  L E    + +   T   R D+      A   LDV    +    +      
Sbjct: 190 AEHFAKTVSYLKERNSKILVECLTPDFRGDLKAIEKVALSGLDVYAHNVETVPE----LQ 245

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
            K  + R    +  +++   + VRPD+   +  ++G  GE D+   ATM  + +      
Sbjct: 246 RKVRDPRANFDQSLRVLKHAKEVRPDVISKTSIMLGL-GENDEQVYATMKALREADVDCL 304

Query: 363 FSFKYS 368
              +Y 
Sbjct: 305 TLGQYM 310


>gi|261344514|ref|ZP_05972158.1| oxygen-independent coproporphyrinogen III oxidase [Providencia
           rustigianii DSM 4541]
 gi|282567424|gb|EFB72959.1| oxygen-independent coproporphyrinogen III oxidase [Providencia
           rustigianii DSM 4541]
          Length = 457

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 46/266 (17%), Positives = 92/266 (34%), Gaps = 24/266 (9%)

Query: 157 EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARK 216
           +D  E+  I       +R ++ ++ I   C K C FC         ++R   +  +  + 
Sbjct: 34  QDYDEQAFIAATQRYPERPLSLYVHIPF-CHKLCYFC----GCNKLVTRQKHKADEYLQV 88

Query: 217 LIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS-------- 268
           +    +    LL          G  G   T+ D    +S + GL++  +  +        
Sbjct: 89  IEKEIIQRAALLKNRTVTQMHWG--GGTPTYLD-KAQVSHLVGLLKKHFHFAPNAEMSIE 145

Query: 269 -HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
             PR++   +I            L + VQ  +  +   +NR         +I R +    
Sbjct: 146 VDPREIELDMIDHLRSEG--FNRLSMGVQDFNKEVQILVNREQDEEFIFALIKRAKET-- 201

Query: 328 DIAISS-DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQVDEN 385
               +S D I G P +T + F  T+  V ++   +   F Y+       +   ++  D  
Sbjct: 202 GFTSTSIDLIYGLPKQTPESFAFTLKKVAELAPDRLSVFNYAHLPNLFAAQRKIKDEDLP 261

Query: 386 VKAERLLCLQKKLREQQVSFNDACVG 411
              ++L  LQ+ +           +G
Sbjct: 262 TAEQKLDILQETIATLTSDGYQ-FIG 286


>gi|254281700|ref|ZP_04956668.1| conserved hypothetical protein [gamma proteobacterium NOR51-B]
 gi|219677903|gb|EED34252.1| conserved hypothetical protein [gamma proteobacterium NOR51-B]
          Length = 694

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 45/264 (17%), Positives = 86/264 (32%), Gaps = 35/264 (13%)

Query: 151 DTDYSVEDKFERLSIV---DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRS 206
           + D+  E  + RL      D        +   + I  GC   CTFC +    G  I +RS
Sbjct: 317 ELDWVFELPYTRLPHHSYGDAKIPAFEMIQHSVNIMRGCFGGCTFCSITEHEGRIIQNRS 376

Query: 207 LSQVVDEARKLIDNGVCEITLL----GQNVNAWR----------------------GKGL 240
              ++ E  K+ D       ++    G   N WR                       K L
Sbjct: 377 QDSIIREVEKIRDTSPAFTGVISDLGGPTANMWRLACKSKEIESKCRKLSCVFPGICKNL 436

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL--DVLMPYLHLPVQSG 298
           + ++    DL  S   + G+ ++   +    D++    +   +L    +  YL +  +  
Sbjct: 437 NTDQTPLIDLYRSARAVPGVKKVLIASGLRYDIAVETPEYVKELVTHHVGGYLKIAPEHT 496

Query: 299 SDRILKSMNRR--HTAYEYRQIIDRI-RSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
               L  M +    T   ++++ +   +       +   FI   PG TD+D       + 
Sbjct: 497 ESGPLDKMMKPGIGTYDAFKRMFEEYSKQAGKKQYLIPYFIAAHPGTTDNDMINLALWLK 556

Query: 356 KIGYAQAFSFKYSPRLGTPGSNML 379
           +  +       + P      + M 
Sbjct: 557 RNKFRADQVQTFYPSPMATATAMY 580


>gi|295840590|ref|ZP_06827523.1| conserved hypothetical protein [Streptomyces sp. SPB74]
 gi|197698831|gb|EDY45764.1| conserved hypothetical protein [Streptomyces sp. SPB74]
          Length = 656

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 45/317 (14%), Positives = 92/317 (29%), Gaps = 46/317 (14%)

Query: 90  LKNSRIKEGGDLLVVVAGCVAQAEGE----EILRRSPIVNVVVGPQTYYRLPELLERARF 145
           L  +  +   D+  V+ G       E     +L     V+ VV       L  L ++A  
Sbjct: 192 LAEAVKRIRPDVRTVLGGPTLSLMNESDLARLLEVHHQVDAVVRFDGEAPLLALYQQAAA 251

Query: 146 GK----RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTI--------------QEGCD 187
           G+     V       + +        G +       A+                   GC 
Sbjct: 252 GEWRPTEVRGVSAMADGETVHALPAPGLHPNTLPPAAYDPALMARLVGHEMGIVQARGCY 311

Query: 188 KF-CTFCVVPYTR---GIEISRSLSQVVDEARKLID-NGVCEITLLGQNVNAWRGKGLDG 242
              C +C              RS+   + E    +  + V    L+ +++          
Sbjct: 312 WGKCDYCDFVELYDGSPPYRGRSVQSFMAELEHQVRTHDVRHFELITESI---------- 361

Query: 243 EKCTFSDLLYS--LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300
               F+       L     +    +     R     L++    +     YL + +++ + 
Sbjct: 362 -PPAFARRFSQAVLDRGMDITWNSFAMVDRR-FDAELLQLM--VRAGCEYLIIGMETTNS 417

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
           R+LK +++     E  + I         + +  + I   P  T ++   ++  V ++   
Sbjct: 418 RVLKLVHKSADRQENLRFIREAHRA--GMKLRINLIPDLPSTTLEEAMESLRDVAELA-D 474

Query: 361 QAFSFKYSPRLGTPGSN 377
              SF   P   T  S 
Sbjct: 475 CVESFTVFPFEATRSSE 491


>gi|238925354|ref|YP_002938871.1| magnesium-protoporphyrin IX monomethyl ester oxidative cyclase
           [Eubacterium rectale ATCC 33656]
 gi|238877030|gb|ACR76737.1| magnesium-protoporphyrin IX monomethyl ester oxidative cyclase
           [Eubacterium rectale ATCC 33656]
          Length = 631

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/254 (15%), Positives = 84/254 (33%), Gaps = 15/254 (5%)

Query: 108 CVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVD 167
           C   A   ++   + I                +  A  G +  +  ++     + +S + 
Sbjct: 124 CGYYAHKRKLSDIAGIAFRKNSTGNSTSNRTSVNNA--GCKADEIVFTSPRPIKNMSEIP 181

Query: 168 GGYNRKRGV---TAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCE 224
             Y+          +     GC   C++C+          R    V  E +  ID  V +
Sbjct: 182 FCYDTLDDFSNRIIYYESSRGCPFSCSYCL-SSVDKTLRFRDTEIVKRELKFFIDQKVPQ 240

Query: 225 ITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL 284
           I  + +  N               +L   +      V   +       ++   I+   D+
Sbjct: 241 IKFVDRTFNCNH--------AHAMELWRFIKANDNGVTNFHFEISADLLNQEEIELISDM 292

Query: 285 DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETD 344
              +  L + VQS ++  +K ++R       ++++  I+S   +I    D I G P E  
Sbjct: 293 RPGLIQLEIGVQSTNEVTIKEIHRTMKLERLKEVVRLIQSGN-NIHEHLDLIAGLPYEDY 351

Query: 345 DDFRATMDLVDKIG 358
           D F  + D + ++ 
Sbjct: 352 DSFGRSFDEIYELK 365


>gi|121607466|ref|YP_995273.1| lipoyl synthase [Verminephrobacter eiseniae EF01-2]
 gi|171769524|sp|A1WF48|LIPA_VEREI RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|121552106|gb|ABM56255.1| lipoic acid synthetase [Verminephrobacter eiseniae EF01-2]
          Length = 332

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 45/257 (17%), Positives = 89/257 (34%), Gaps = 33/257 (12%)

Query: 126 VVVGPQTYYRLPELL--ERARFGKRVVDT-----DYSVEDKFERLSIVDGGYNRKRGVTA 178
           + V P    + P+ +  + A  G R  D      ++ +    E  S  + G    +G   
Sbjct: 33  IKVEPGERLKKPDWIRVKAASPGTRFDDIKRILREHRLHTVCEEASCPNIGECFGKGTAT 92

Query: 179 FLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK 238
           F+ + + C + C FC V + R   +     + ++ AR +    +  + +   +    R  
Sbjct: 93  FMIMGDKCTRRCPFCDVGHGRPDPL--DQDEPMNLARTVAALALEYVVITSVD----RDD 146

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLI--------KAHGDLDVLMPY 290
             DG    F D + S+ ++    R+       R   D  +                  P 
Sbjct: 147 LRDGGSGHFVDCIQSIRKLSPQTRIEILVPDFRGRDDRALAILQAAPPDVMNHNLETAPR 206

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
           L+   + GSD                 ++ + +++ P +   S  +VG  GETD++    
Sbjct: 207 LYPQARPGSDYRFS-----------LNLLKKFKALHPTVPTKSGIMVGL-GETDEEILQV 254

Query: 351 MDLVDKIGYAQAFSFKY 367
           M  +   G       +Y
Sbjct: 255 MRDMRAHGIEMLTIGQY 271


>gi|77920114|ref|YP_357929.1| radical SAM domain-containing protein [Pelobacter carbinolicus DSM
           2380]
 gi|77546197|gb|ABA89759.1| radical SAM domain protein [Pelobacter carbinolicus DSM 2380]
          Length = 531

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 55/327 (16%), Positives = 107/327 (32%), Gaps = 40/327 (12%)

Query: 95  IKEGGDLLVVVAGCVAQAEGEEIL---RRSPIVNVVVGPQTYYRLPELLERARFGKRVVD 151
            +    + +V  G +  +    +     R P+ + +V       L +LLE       +++
Sbjct: 185 RRHFPGIPLVAGGGMITSWQSALRETGMRLPVFDHLVSGPGEQPLYDLLEAESRADYLLE 244

Query: 152 TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK-FCTFCVVPYTRGI---EISRSL 207
              ++  + +   +   GY     V   +T   GC    C FC  P          +   
Sbjct: 245 DRSTLALEPDFTDLDTAGYLSPHPVL-PVTASRGCYWARCLFC--PEASSPTHPYKAFPG 301

Query: 208 SQVVDEARKLIDNG-VCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
            ++    R L     V    L    +     + L  +     DL              + 
Sbjct: 302 HELPQLLRSLAQRWKVRHFHLTDNAIPPSALQALAAQADRLCDLS----------WYGFV 351

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
                 +   LI+           L L ++SGS  +L  + +        +++ R+R   
Sbjct: 352 RFEAALLQGDLIERLARGG--CRLLQLGLESGSQAVLDRLAKGTRLAIAAEVLRRLRQA- 408

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDK-------IGYAQAFSFKYSPRLGTPGS--- 376
             IA     ++G PGE+ D+ R T   ++        +  A     ++S    T  +   
Sbjct: 409 -GIATYVYVLLGTPGESPDEARRTKAFLEDHADCIDYLNLAIMNMPRHSALAATDAAGGA 467

Query: 377 ---NMLEQVDENVKAERLLC--LQKKL 398
              ++   VDE+    R     LQ++L
Sbjct: 468 SPLDLYLPVDEHATERRAARRFLQQEL 494


>gi|212640247|ref|YP_002316767.1| lipoyl synthase [Anoxybacillus flavithermus WK1]
 gi|212561727|gb|ACJ34782.1| Lipoic acid synthetase (lipoate synthase) [Anoxybacillus
           flavithermus WK1]
          Length = 304

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/214 (16%), Positives = 77/214 (35%), Gaps = 13/214 (6%)

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           ++V ++    +I +    R+     F+ + + C + C FC V      E+     +    
Sbjct: 47  HTVCEEARCPNIHECWAVRR--TATFMILGDVCTRACRFCAVKTGLPTEL--DWQEPERV 102

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
           A  +    +  + +        R    DG    F++ + ++     L  +    S    +
Sbjct: 103 AESVRLMNLKHVVVTAV----ARDDLKDGGAAVFAETVRAVRRKNPLTTIEVLPSDMGGV 158

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
            + L         ++ +    V+  +      +  R T     + + R + ++PDI   S
Sbjct: 159 YENLKTLMDARPDILNHNIETVRRLTP----RVRARATYERSLEFLRRAKEMQPDIPTKS 214

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
             +VG  GET ++    MD +  +G       +Y
Sbjct: 215 SLMVGL-GETKEEILEAMDDLRAVGVNILTIGQY 247


>gi|118581394|ref|YP_902644.1| radical SAM domain-containing protein [Pelobacter propionicus DSM
           2379]
 gi|118504104|gb|ABL00587.1| Radical SAM domain protein [Pelobacter propionicus DSM 2379]
          Length = 293

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 39/203 (19%), Positives = 79/203 (38%), Gaps = 15/203 (7%)

Query: 165 IVDGGYNRKRGVTAFLTIQEGCDKF-CTFCVVPYTRGIEISRSLSQVVDEARKL---IDN 220
           +           +    I  GC +  C FC + Y       R + ++++E +++     +
Sbjct: 5   VEPLFRPPSEAHSLIFQITIGCSQRQCAFCGM-YKGKDFRLRPVGEILEEIQEIPLPYRS 63

Query: 221 GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKA 280
            V  + L   +   +     DG       L  +L    GL R+    S     +    + 
Sbjct: 64  RVQRVFLADGDALVY---PFDGLVTILDSLATTL---PGLTRVASYASPRSLTTKDAGQL 117

Query: 281 HGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFP 340
               +  +  L+L ++SG D  LK++N+ +TA E  ++    R     + +S   I+G  
Sbjct: 118 ALLREKRLSMLYLGLESGDDATLKAINKGYTADEIAELATMARDA--GMKLSVTAILGLA 175

Query: 341 G--ETDDDFRATMDLVDKIGYAQ 361
           G   + +  RAT + V+++    
Sbjct: 176 GRARSLEHARATAEWVNRVNPEY 198


>gi|313679765|ref|YP_004057504.1| radical sam domain protein [Oceanithermus profundus DSM 14977]
 gi|313152480|gb|ADR36331.1| Radical SAM domain protein [Oceanithermus profundus DSM 14977]
          Length = 498

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 39/223 (17%), Positives = 80/223 (35%), Gaps = 24/223 (10%)

Query: 184 EGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
            GC + CTFC+     G   +    +V++        GV ++ L+G  ++ +        
Sbjct: 226 RGCPRPCTFCLARTMYGPTRNVPAERVLEVV----PEGVAKVGLVGAALSDY-------- 273

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
                 +  +L E    V+L  ++     +   L     +    +    +     S R+ 
Sbjct: 274 -PHIKRVGRALLERG--VKLSVSSIRADRVDAELAAILKEGG--LRTFTIASDGPSQRLR 328

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL---VDKIGYA 360
             + ++ T     +  +  R +          ++G P ETDDD    +     V +I   
Sbjct: 329 DLLKKQITEDHLLRAAEIARDLGFK-GYKLYQMIGLPTETDDDISEMIAFTRRVAEITPV 387

Query: 361 QAFSFKYSPRLGTPGSNMLEQVDE-NVKAERLLCLQKKLREQQ 402
                 + P+  TP  +  ++         RL  +QK+LR+ +
Sbjct: 388 ALGISPFVPKRHTP--HWGDRFAGIKTIEARLKRIQKELRKLR 428


>gi|309780015|ref|ZP_07674768.1| lipoyl synthase [Ralstonia sp. 5_7_47FAA]
 gi|308921185|gb|EFP66829.1| lipoyl synthase [Ralstonia sp. 5_7_47FAA]
          Length = 344

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/208 (15%), Positives = 74/208 (35%), Gaps = 12/208 (5%)

Query: 161 ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN 220
           E  S  + G    +G   F+ + + C + C FC V + R   +   +++  + A+ + + 
Sbjct: 92  EEASCPNIGECFGKGTATFMIMGDKCTRRCPFCDVGHGRPDPL--DVNEPENLAKTIAEL 149

Query: 221 GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKA 280
            +  + +   +    R    DG    + D +     +    R+       R   +  +  
Sbjct: 150 KLNYVVITSVD----RDDLRDGGAQHYVDCISRTRALSPATRIEVLVPDFRGRLEKALDI 205

Query: 281 HGDLDV-LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGF 339
             +    +M +    V     R+ K            +++   ++  P++   S  +VG 
Sbjct: 206 LQECPPDVMNHNLETV----PRLYKQARPGADYAHSLKLLKDFKARNPNVPTKSGLMVGL 261

Query: 340 PGETDDDFRATMDLVDKIGYAQAFSFKY 367
            GETD++    M  + +         +Y
Sbjct: 262 -GETDEEILEVMRDMREHDIDMLTIGQY 288


>gi|290968971|ref|ZP_06560506.1| radical SAM protein, TIGR01212 family [Megasphaera genomosp. type_1
           str. 28L]
 gi|290780927|gb|EFD93520.1| radical SAM protein, TIGR01212 family [Megasphaera genomosp. type_1
           str. 28L]
          Length = 358

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 39/216 (18%), Positives = 70/216 (32%), Gaps = 19/216 (8%)

Query: 173 KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNV 232
           K  +        GC   C FC      G       +      ++ I   +   TL     
Sbjct: 2   KTSIIPIFIPHIGCPYRCVFCNQWKITGQHR-VPTAT---FVKETIQQYMQAATLSRHWE 57

Query: 233 NAWRGKGLDGEKCTFSDLL-----YSL--SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLD 285
            A+ G           + L      +L   +I G+       +  +D+ + L++      
Sbjct: 58  VAFYGGSFTAVPTALQESLLEPATQALRQGKIHGIRCSTRPDAVGKDVIERLLRF----- 112

Query: 286 VLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDD 345
             +  + L VQS  D +L+   R HTA +  Q   R+      + +    + G PGE + 
Sbjct: 113 -GVNTVELGVQSMDDTVLQRAKRGHTAADVVQATRRLHKY--GLLVGHQLMPGLPGEDER 169

Query: 346 DFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
             + T   V  +    A  +  +    T  +    Q
Sbjct: 170 SLQQTAAAVCALQPDAARIYPVAVLAETELAAQYRQ 205


>gi|281342304|gb|EFB17888.1| hypothetical protein PANDA_014664 [Ailuropoda melanoleuca]
          Length = 343

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 67/186 (36%), Gaps = 15/186 (8%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLS--QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
           C + C FC V   R       L   +  + A+ + + G+  + L   +    R    DG 
Sbjct: 122 CTRGCRFCSVKTARNP---PPLDASEPYNTAKAIAEWGLDYVVLTSVD----RDDMPDGG 174

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPR-DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
              F+  +  L E    + +   T   R D+      A   LDV    +    +      
Sbjct: 175 AEHFAKTVSYLKERNSKILVECLTPDFRGDLKAIEKVALSGLDVYAHNVETVPE----LQ 230

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
            K  + R    +  +++   + VRPD+   +  ++G  GE D+   ATM  + +      
Sbjct: 231 RKVRDPRANFDQSLRVLKHAKEVRPDVISKTSIMLGL-GENDEQVYATMKALREADVDCL 289

Query: 363 FSFKYS 368
              +Y 
Sbjct: 290 TLGQYM 295


>gi|197121147|ref|YP_002133098.1| radical SAM protein [Anaeromyxobacter sp. K]
 gi|196170996|gb|ACG71969.1| Radical SAM domain protein [Anaeromyxobacter sp. K]
          Length = 898

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 36/228 (15%), Positives = 74/228 (32%), Gaps = 28/228 (12%)

Query: 179 FLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLI-DNGVCEITLLGQNVNAWRG 237
            + +Q GC + C FC V         R   QV+  A   +  +G  E+ LL  +   +  
Sbjct: 271 PIELQRGCTRGCRFCQVGMITRPTRQRDPKQVLALAETGLRASGYEEVGLLSLSSGDY-- 328

Query: 238 KGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKA-HGDLDVLMPYLHLPVQ 296
                       L   L+  +G        S   +  +  + A    +        L  +
Sbjct: 329 ------GALNGLLDDFLARWEGERIAMSLPSLRTETMNEALAAKIARIRK--TGFTLAPE 380

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
           + ++R+   +N+ +   +  + ++ I      + +   F++G P E D+D  A  +L  +
Sbjct: 381 AATERMRAVINKGNREEDLLRAVESIFGNGWSL-LKLYFMIGLPEERDEDVVAIAELAKR 439

Query: 357 I--------------GYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER 390
                                +  + P+  TP       +       R
Sbjct: 440 CLAAARRVLPKGEGSPAIHLGASTFVPKPFTP-FQWEPMIPPEETRRR 486


>gi|163803889|ref|ZP_02197730.1| lipoyl synthase [Vibrio sp. AND4]
 gi|159172303|gb|EDP57190.1| lipoyl synthase [Vibrio sp. AND4]
          Length = 321

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/182 (14%), Positives = 63/182 (34%), Gaps = 10/182 (5%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V    G  ++    +    A+ + D  +  + +   +    R    DG   
Sbjct: 94  CTRRCPFCDV--AHGRPLAVEAEEPKKLAKTIADMKLKYVVITSVD----RDDLRDGGAE 147

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
            F++    + E+   +++       R   D  ++   D     P +       + R+ + 
Sbjct: 148 HFANCNREIRELNPHIKIETLVPDFRGRMDVALELMKDNP---PDVFNHNLETAPRLYRK 204

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
                      Q++ + +   P++   S  ++G  GET ++    +  +   G       
Sbjct: 205 ARPGANYKWSLQLLQKFKQQHPNVPTKSGLMMGL-GETKEEIVEVLKDLRAHGVTMLTLG 263

Query: 366 KY 367
           +Y
Sbjct: 264 QY 265


>gi|78779990|ref|YP_398102.1| lipoyl synthase [Prochlorococcus marinus str. MIT 9312]
 gi|78713489|gb|ABB50666.1| lipoic acid synthetase [Prochlorococcus marinus str. MIT 9312]
          Length = 297

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/208 (15%), Positives = 68/208 (32%), Gaps = 11/208 (5%)

Query: 166 VDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEI 225
            + G     G   FL +  GC + C +C + + R        ++    A  +    +  +
Sbjct: 47  PNIGECFASGTATFLIMGPGCTRACPYCDIDFDRSK-RELDPTEPYRLAEAVYRMRLKHV 105

Query: 226 TLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLD 285
            +   N    R    DG    F + +Y + +      +             L K      
Sbjct: 106 VITSVN----RDDLEDGGASQFFECVYQVRKKSPETTIELLIPDFCGNWKALEKVLDSNP 161

Query: 286 VLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDD 345
            ++ +    V S    + K +  +       +++ R R   P +   S F++G  GE D+
Sbjct: 162 NVLNHNIETVPS----LYKKVRPQGKYERTLELLKRTRDYSPKVYTKSGFMLGL-GEKDE 216

Query: 346 DFRATMDLVDKIGYAQAFSFKY-SPRLG 372
           +    ++ +           +Y SP   
Sbjct: 217 EVLNLLEDLRSNYVDIVTIGQYLSPGPN 244


>gi|225016711|ref|ZP_03705903.1| hypothetical protein CLOSTMETH_00621 [Clostridium methylpentosum
           DSM 5476]
 gi|224950515|gb|EEG31724.1| hypothetical protein CLOSTMETH_00621 [Clostridium methylpentosum
           DSM 5476]
          Length = 369

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 41/199 (20%), Positives = 69/199 (34%), Gaps = 25/199 (12%)

Query: 186 CDKFCTFCVVPYTRGIE--ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
           C+  C +C      G E    R +  V+ E  +   +G+   TL              G 
Sbjct: 11  CNGKCPYCDFYSLAGDEEIKERYVEAVLRELEEAHRDGMRADTL------------YFGG 58

Query: 244 KCTFSDLLYSLSEIKGLVRLRY--------TTSHPRDMSDCLIKAHGDLDVLMPYLHLPV 295
                     L  I    R  Y        T ++P  ++   + +     +    +   V
Sbjct: 59  GTPTLLSPQQLGRITTQARRLYELQNAEITTEANPNSVTFNQLDSLRQSGI--NRISFGV 116

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
           QS  D  LK + RRHTA +  Q I   +    D  IS D ++G P +T      ++D ++
Sbjct: 117 QSAVDAELKLLGRRHTAAQAEQAITLAKQAGFD-NISCDLMLGIPNQTAQSLAQSLDWIN 175

Query: 356 KIGYAQAFSFKYSPRLGTP 374
           +       ++       TP
Sbjct: 176 RQNIQHVSAYLLKIEPSTP 194


>gi|153954112|ref|YP_001394877.1| hypothetical protein CKL_1487 [Clostridium kluyveri DSM 555]
 gi|146346993|gb|EDK33529.1| Conserved hypothetical protein [Clostridium kluyveri DSM 555]
          Length = 571

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/210 (16%), Positives = 72/210 (34%), Gaps = 12/210 (5%)

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            GK  ++ +  + D  +     +   N K  +  +     GC   C +C+          
Sbjct: 156 QGKMFLNEERELMDMNKIAFPYEEQDNLKNKIVYYEA-SRGCPFSCKYCLSSTIH-KVRF 213

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
             + +V  E + LID  +  I  + +  N               +L   + E        
Sbjct: 214 LDIERVKREIKFLIDKNIALIKFVDRTFNC--------NPKFTLELWKFIIECDTQTTFH 265

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +  S    ++   I    +         + VQ+ ++ +L ++N R+  ++  +   +   
Sbjct: 266 FEISADI-LTGEEIALLKESPKGRIQFEIGVQTTNENVLNNIN-RYVKFKDIKDKVKKIK 323

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLV 354
              +I    D I G PGE    F+ + + V
Sbjct: 324 ANNNIKQHLDLIAGLPGEDFKSFKKSFNKV 353


>gi|74316292|ref|YP_314032.1| lipoyl synthase [Thiobacillus denitrificans ATCC 25259]
 gi|123745574|sp|Q3SM23|LIPA_THIDA RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|74055787|gb|AAZ96227.1| lipoate synthase [Thiobacillus denitrificans ATCC 25259]
          Length = 311

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 41/215 (19%), Positives = 74/215 (34%), Gaps = 10/215 (4%)

Query: 153 DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVD 212
           +  +    E  S  + G     G   F+ + + C + C FC V +   +       +   
Sbjct: 51  EAKLHTVCEEASCPNLGECFGHGTATFMILGDLCTRRCPFCDVGHGTPLP--PDADEPRH 108

Query: 213 EARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
            A  +    +  + +   +    R    DG    F++ + ++ E     R+   T    D
Sbjct: 109 LAETIALMALKYVVITSVD----RDDLRDGGAGHFAECIAAVREKSPATRIEILTP---D 161

Query: 273 MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAIS 332
               L KA   LD   P +         R+ K+           +++   R+  PDI   
Sbjct: 162 FRGRLDKALAALDRAPPDVMNHNLETVPRLYKAARPGADYAHSLKLLQDFRTRHPDIPTK 221

Query: 333 SDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           S  ++G  GETDD+    M  +   G       +Y
Sbjct: 222 SGLMLGL-GETDDEILEVMRDLRAHGVDMLTLGQY 255


>gi|86609279|ref|YP_478041.1| radical SAM domain-containing protein [Synechococcus sp.
           JA-2-3B'a(2-13)]
 gi|86557821|gb|ABD02778.1| radical SAM domain protein [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 887

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 44/256 (17%), Positives = 90/256 (35%), Gaps = 36/256 (14%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGK 238
           + ++ GC + C FC            +   VV+   + +   G  E +L   + + +   
Sbjct: 265 MEVRRGCTRGCRFCQPGMLTRPARDVAPEAVVEAVVQGLRKTGYNEFSLSSLSCSDYLSL 324

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
              G +     L   ++            S   D  D  I A          L    ++G
Sbjct: 325 PAVGAELHNRLLREHIA--------LSLPSQRVDRFDEQIAAIMKGSR-RSGLTFAPEAG 375

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA--ISSDFIVGFPGETDDD---FRATMDL 353
           + R+   +N+  T      +I  IR+   +    I   F++G PGETD D      T+++
Sbjct: 376 TQRLRDIINKGLT---DADLIRGIRTAVQEGWDKIKLYFMIGLPGETDADVLGIARTVEM 432

Query: 354 V---------DKIGYAQAFSFKYSPRLGTPG-SNMLEQVDENVKA-------ERLLCLQK 396
           +          ++ +       ++P+  TP   + ++  D   K         RL  ++ 
Sbjct: 433 LQRECAALGRKRVEFT-LTLSNFTPKPHTPFQWHRVDYADVQRKQALLQKELRRLRGVKA 491

Query: 397 KLREQQVSFNDACVGQ 412
              + + S  +  +G+
Sbjct: 492 HFTDIRFSILEDFIGK 507


>gi|315185878|gb|EFU19643.1| lipoic acid synthetase [Spirochaeta thermophila DSM 6578]
          Length = 294

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 41/206 (19%), Positives = 73/206 (35%), Gaps = 10/206 (4%)

Query: 162 RLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNG 221
           R   +   + R R  T FL + E C + C FC V    G        +    A+ +   G
Sbjct: 40  RCPNLHECWGRYRTAT-FLLLGEVCTRRCRFCAV--GHGRPCPPDPEEPARVAQVVARLG 96

Query: 222 VCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAH 281
           +  + L        R    DG     +  +  + +    VR+   TS  R     L    
Sbjct: 97  IRHVVLTMVT----RDDLPDGGAGHVAAAVREVRKASPGVRVEILTSDFRGDLAALETVL 152

Query: 282 GDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPG 341
                +M +    V+  + R+    +   +    R+   R+R       + S F+VG  G
Sbjct: 153 ESRPEIMSHNVETVRRLTPRVRSGASYERSLAFLREAGLRVREY--GGFLKSSFMVGL-G 209

Query: 342 ETDDDFRATMDLVDKIGYAQAFSFKY 367
           ET+++ + T+  +   G       +Y
Sbjct: 210 ETEEEVKETLHDLRAAGVQMVNIGQY 235


>gi|226360384|ref|YP_002778162.1| coproporphyrinogen III oxidase [Rhodococcus opacus B4]
 gi|226238869|dbj|BAH49217.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Rhodococcus opacus B4]
          Length = 402

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 49/254 (19%), Positives = 90/254 (35%), Gaps = 30/254 (11%)

Query: 171 NRKRGVTAFLTIQEGCDKFCTFCVV-PYTRGIE-ISRSLSQVVDEARKLIDNGVCEITLL 228
           +R  G+   +     C   C +C    Y  G    S S    ++  R+ +D       L 
Sbjct: 29  SRPFGIYVHVPF---CATRCGYCDFNTYMAGELGTSASPQSWMEGLRRELD-------LA 78

Query: 229 GQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL 287
            Q   A     +  G           L+++ G VR  +  S   +++             
Sbjct: 79  AQMTGAPAVDTVFVGGGTPSLLGGDGLADVLGAVRSSFGLSDGAEVTTE-SNPESTSPEF 137

Query: 288 MPY--------LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA-ISSDFIVG 338
                      + L +QS +  +LK ++R HT    R +   + +       ++ D I G
Sbjct: 138 FERLLAGGFTRISLGMQSAAQHVLKVLDRTHT--PGRAVAAALEARAAGFGHVNLDLIYG 195

Query: 339 FPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM-----LEQVDENVKAERLLC 393
            PGE D+D   ++D V   G     ++      GT  +       L   D++V A R   
Sbjct: 196 TPGERDEDLDLSLDAVLSAGVDHVSAYALIVEDGTALARKVRRGELPAPDDDVLASRYER 255

Query: 394 LQKKLREQQVSFND 407
           +  +L E  +++ +
Sbjct: 256 IDARLAEAGLTWYE 269


>gi|168184660|ref|ZP_02619324.1| radical SAM domain protein [Clostridium botulinum Bf]
 gi|182672268|gb|EDT84229.1| radical SAM domain protein [Clostridium botulinum Bf]
          Length = 363

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 38/210 (18%), Positives = 74/210 (35%), Gaps = 11/210 (5%)

Query: 176 VTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEI-TLLGQNVNA 234
           +      QEGC   C FC      G E +  + +  +  R+ I+  +  I         +
Sbjct: 7   IIPIFVAQEGCPHNCVFCNQHKITG-EKNEMIDE--NYVRETIEAYIKTIDRENSTLEVS 63

Query: 235 WRGKGLDGEKCTFSDLLYSLSEI---KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL 291
           + G    G        L  +++    KG +   + ++ P  +   ++            +
Sbjct: 64  FFGGTFTGIPIERQKSLLKVAKEYKNKGQIDYIHMSTRPDYIDREILDNLKKYS--ADII 121

Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351
            L VQS  D +L    R H+  E  +    I+       +    ++G PG+T      T+
Sbjct: 122 ELGVQSLDDEVLLKSGRGHSVEEVHRASKLIKEY--GFTLGHQIMLGLPGDTFKKDIETV 179

Query: 352 DLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
               ++    A  +       TP  +ML++
Sbjct: 180 AKSLEMEPDIARIYPALVIKDTPMEDMLKK 209


>gi|167040356|ref|YP_001663341.1| radical SAM domain-containing protein [Thermoanaerobacter sp. X514]
 gi|300914440|ref|ZP_07131756.1| Radical SAM domain protein [Thermoanaerobacter sp. X561]
 gi|307724324|ref|YP_003904075.1| Radical SAM domain-containing protein [Thermoanaerobacter sp. X513]
 gi|166854596|gb|ABY93005.1| Radical SAM domain protein [Thermoanaerobacter sp. X514]
 gi|300889375|gb|EFK84521.1| Radical SAM domain protein [Thermoanaerobacter sp. X561]
 gi|307581385|gb|ADN54784.1| Radical SAM domain protein [Thermoanaerobacter sp. X513]
          Length = 354

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/200 (15%), Positives = 71/200 (35%), Gaps = 11/200 (5%)

Query: 185 GCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK 244
           GC   C FC      G +         +  R+ I+  +  +    +   ++ G    G  
Sbjct: 16  GCPFKCVFCNQNSITGQQQ----EITEEYVRQTIETHLKTLPSNAEIEVSFFGGSFTGIP 71

Query: 245 CTFSDLLYSLSEI---KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
               +L   +++    KG +     ++ P  +   +++        +  + L VQS  + 
Sbjct: 72  QDKQNLYLGIAKEYLDKGKIDAIRLSTRPDYIDTEILQNLKRYK--VSIIELGVQSMDEE 129

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
           +L    R HT+ +  + ++ IR    D  +    ++G PG+  +    T   + ++    
Sbjct: 130 VLLKSRRGHTSEDVVKTVNLIRQY--DFKLGLQIMIGLPGDNLEKSLNTAYKIVELKPDF 187

Query: 362 AFSFKYSPRLGTPGSNMLEQ 381
              +       T    M ++
Sbjct: 188 VRIYPTLVIKNTYLERMYKE 207


>gi|303247905|ref|ZP_07334173.1| Radical SAM domain protein [Desulfovibrio fructosovorans JJ]
 gi|302490806|gb|EFL50707.1| Radical SAM domain protein [Desulfovibrio fructosovorans JJ]
          Length = 532

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 41/218 (18%), Positives = 76/218 (34%), Gaps = 23/218 (10%)

Query: 152 TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR--------GIEI 203
              S +     L  V   + R   V   +T   GC   C +C VP  +            
Sbjct: 193 IPLSADVLAHALPRVPYRHGRLLCVYRTMT-DRGCPHGCAYCNVPTVKTLFAGGGTPYFR 251

Query: 204 SRSLSQVVDEARKLIDNG--VCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
           +RS+  V+ E R++      +  I L      + R   L     ++          K + 
Sbjct: 252 NRSVDHVMAELREITARYPFIEGIQLFDDTFFSRRMDWLAAFAASYK---------KDIG 302

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
              +  + P  +S   +     +D  + Y+ + +QSGS +I +   R  +          
Sbjct: 303 LPLFCQASPTTLSADKLDLL--IDAGLCYVEMGIQSGSPKIKRLFRRSESEDTVLAGARL 360

Query: 322 IRSVRPD-IAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           +   R   +      I+  P ET++D   T+ L+ K+ 
Sbjct: 361 LHERRGKLLTPDYHVIIDSPWETEEDLLETVRLLAKLP 398


>gi|257459001|ref|ZP_05624120.1| quinone-reactive Ni/Fe hydrogenase, large subunit [Campylobacter
           gracilis RM3268]
 gi|257443386|gb|EEV18510.1| quinone-reactive Ni/Fe hydrogenase, large subunit [Campylobacter
           gracilis RM3268]
          Length = 405

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/202 (16%), Positives = 70/202 (34%), Gaps = 13/202 (6%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           CD  C+FC +        S+   ++ + A+ LI        +   +    +     G   
Sbjct: 47  CDNICSFCSM------MRSKLGDELDEYAKFLIRQIKDYGEMPYFDTKKIKSIYFGGGTP 100

Query: 246 T------FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
           +      F  +L +L +   +      +      +  L KA       +    + VQ+ S
Sbjct: 101 SVFSETHFEKVLGALHKNFKIADDCEISVETTLHNLDLQKALSLQSFGVNRFSIGVQTFS 160

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
            +    +NR H      + +  +R     + +  D I  FP E+ ++       VD++G 
Sbjct: 161 RQGRALLNRVHKPARAIERLKDLREKFDGM-LCCDIIYNFPNESVEEALEDARYVDELGL 219

Query: 360 AQAFSFKYSPRLGTPGSNMLEQ 381
             A  +      G+     +++
Sbjct: 220 DSASFYSLMFFEGSELYKKIDK 241


>gi|330998563|ref|ZP_08322383.1| uncharacterized radical SAM protein YgiQ [Paraprevotella
           xylaniphila YIT 11841]
 gi|329568161|gb|EGG49980.1| uncharacterized radical SAM protein YgiQ [Paraprevotella
           xylaniphila YIT 11841]
          Length = 677

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 45/271 (16%), Positives = 95/271 (35%), Gaps = 44/271 (16%)

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAF---LTIQEGCDKFCTFCVVPYTRGIE-ISRS 206
           + D+S +  + RL        R          + +  GC   C FC +   +G   ++RS
Sbjct: 302 EIDHSFDLPYTRLPHPKYKGKRIPAYEMIKFSVNLHRGCFGGCAFCTISAHQGKFIVNRS 361

Query: 207 LSQVVDEARKLIDNGVCEITLL---GQNVNAWRGKG----------------------LD 241
              ++ E R++ +    +  L    G + N +  KG                      L+
Sbjct: 362 KESILKEVRQITEMPDFKGNLSDLGGPSANMYGMKGKNLKACERCKRPSCIHPEICPNLN 421

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTT--------SHPRDMSDCLIKAHGDLDVLMPYLH- 292
            +     D+ +++  + G+ R    +           +D     + A    +++  ++  
Sbjct: 422 TDHTALLDIYHAVDALPGIKRSYIGSGVRYDLLLHDAKDARINQVNAEYTRELITRHVSG 481

Query: 293 ---LPVQSGSDRILKSMNRRHTAYE--YRQIIDRI-RSVRPDIAISSDFIVGFPGETDDD 346
              +  +  S+R+L+ M +        ++ I DRI R       I   FI   PG T++D
Sbjct: 482 RLKVAPEHTSERVLELMRKPSFRLFGEFKNIFDRINREAGLRQQIIPYFISSHPGCTEED 541

Query: 347 FRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
                 L  ++ +       ++P   T  + 
Sbjct: 542 MAELAVLTKRMDFQLEQVQDFTPTPMTVSTE 572


>gi|320169262|gb|EFW46161.1| lipoic acid synthase [Capsaspora owczarzaki ATCC 30864]
          Length = 463

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/219 (16%), Positives = 84/219 (38%), Gaps = 16/219 (7%)

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQ-EGCDKFCTFCVVPYTRGIEISRSL---SQ 209
           ++V ++    +I +     K   TA + +  + C + C FC V    G   +      ++
Sbjct: 188 HTVCEEARCPNIGECWGGGKGTATATIMLMGDTCTRGCRFCSV----GTSRNPPPLDPNE 243

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSH 269
             + A+ ++  G+  + L   +    R    DG    F++ +  +   K  + +   T  
Sbjct: 244 PTNTAQAIVKWGLDYVVLTSVD----RDDLPDGGSHHFAETIREIKRQKPSLLVECLTPD 299

Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329
            R  +   I+      + + Y H  V++         +RR    +   ++   + VRP++
Sbjct: 300 FRG-NLEQIERVATSGLDV-YAH-NVETVEALQKHVRDRRANYKQSLAVLTHAKKVRPNL 356

Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
              +  ++G  GE D++   T+  +  I        +Y 
Sbjct: 357 VTKTSIMLGL-GERDEEVMQTLKDLRAIDVDCVTFGQYM 394


>gi|307150123|ref|YP_003885507.1| Radical SAM domain-containing protein [Cyanothece sp. PCC 7822]
 gi|306980351|gb|ADN12232.1| Radical SAM domain protein [Cyanothece sp. PCC 7822]
          Length = 521

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 58/359 (16%), Positives = 116/359 (32%), Gaps = 46/359 (12%)

Query: 58  SMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEI 117
             D A L++ +   +      +    L +I   K          LV V G    +    +
Sbjct: 62  EWDWAQLVIFSAMIV------QKQDLLEQIAEAKRRGK------LVAVGGAYPTSVP--L 107

Query: 118 LRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGV- 176
             +   VN +V  +    LP+ +E  + G+       S +       I            
Sbjct: 108 DMQQAGVNFLVLDEGENTLPQFVEALKRGETEGIFRSSEKPDVSLTPIPRYDLLELDAYD 167

Query: 177 TAFLTIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW 235
           +  +    GC   C FC +    G +  +++  Q++ E   L + G      +  +    
Sbjct: 168 SMSIQFSRGCPFQCEFCDIIVLYGRKPRTKAPHQLLKELDYLYELGWRRGVFMVDD---- 223

Query: 236 RGKGLDGEKCTFSDLLYSLS--EIKGLVRLRYTTSHPRDM--SDCLIKAHGDLDVLMPYL 291
                 G K     LL+ L   + +     R+ T    D+   D L+    + +     +
Sbjct: 224 ---NFIGNKRNVKKLLHELKVWQTEHQFPFRFNTEASVDLAQDDELMNLMVECN--FDAV 278

Query: 292 HLPVQSGSDRILKSMNRRHT--AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
            L +++  +  L    +++        + +D++  +R  +   + FI+GF GE       
Sbjct: 279 FLGIETPDEDSLILT-KKYQNVRDPLLETVDKM--IRIGLRPMAGFIIGFDGEKKGAATR 335

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDA 408
            +D V++     A          T               ERL    + L   +   N +
Sbjct: 336 IIDFVEQGAIPTAMFGMLQALPNTAL------------WERLEKENRLLVNNKQDINQS 382


>gi|115374425|ref|ZP_01461707.1| lipoic acid synthetase [Stigmatella aurantiaca DW4/3-1]
 gi|115368517|gb|EAU67470.1| lipoic acid synthetase [Stigmatella aurantiaca DW4/3-1]
          Length = 335

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/193 (14%), Positives = 64/193 (33%), Gaps = 10/193 (5%)

Query: 175 GVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA 234
           G    + + E C + C FC V       +     + V  A+ + +  +  I +   N   
Sbjct: 89  GTATVMLMGEVCTRACRFCHVKVGAPPPL--DPMEPVHLAQAVREMDLEYIVVTSVN--- 143

Query: 235 WRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP 294
            R    DG    F+  +  L +      +       + +   L         ++ +    
Sbjct: 144 -RDDRPDGGASHFALAIRELRKESPKTIVEVLIPDFKGVEKDLTTVAEARPHVVAHNVET 202

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           V+  +   ++     +      ++++ ++     +   S  +VG  GETD +   T   +
Sbjct: 203 VERLTP-TVRDRRAGYRQS--LRVLEYLKRRPEGLYTKSSVMVGL-GETDAELEQTFKDL 258

Query: 355 DKIGYAQAFSFKY 367
            + G       +Y
Sbjct: 259 REAGVDVLTLGQY 271


>gi|57048078|ref|XP_536255.1| PREDICTED: similar to lipoic acid synthetase isoform 1 precursor
           isoform 1 [Canis familiaris]
          Length = 373

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 67/186 (36%), Gaps = 15/186 (8%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLS--QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
           C + C FC V   R       L   +  + A+ + + G+  + L   +    R    DG 
Sbjct: 137 CTRGCRFCSVKTARNP---PPLDASEPYNTAKAIAEWGLDYVVLTSVD----RDDMPDGG 189

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPR-DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
              F+  +  L E    + +   T   R D+      A   LDV    +    +      
Sbjct: 190 AEHFAKTVSYLKERNPKILVECLTPDFRGDLKAIEKVALSGLDVYAHNIETVPE----LQ 245

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
            K  + R    +  +++   + VRPD+   +  ++G  GE D+   ATM  + +      
Sbjct: 246 RKVRDPRANFSQSLRVLKHAKEVRPDVISKTSIMLGL-GENDEQVYATMKALREADVDCL 304

Query: 363 FSFKYS 368
              +Y 
Sbjct: 305 TLGQYM 310


>gi|301059948|ref|ZP_07200831.1| radical SAM protein, TIGR01212 family [delta proteobacterium
           NaphS2]
 gi|300445957|gb|EFK09839.1| radical SAM protein, TIGR01212 family [delta proteobacterium
           NaphS2]
          Length = 309

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/210 (15%), Positives = 63/210 (30%), Gaps = 22/210 (10%)

Query: 185 GCDKF--------CTFC----VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLG--Q 230
           GC           C FC            E   S+S  +++A K I         +   Q
Sbjct: 29  GCPNRDGTVSTGGCIFCDGRGSGTGAFTKER-VSISGQIEKAEKFIRKRYHAQKFIAYFQ 87

Query: 231 NVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY 290
           + +                L         +V L   T       + L          + +
Sbjct: 88  SFSNTYAPAF-----HLKQLYDEALSHPDMVGLSIGTRPDCVDREILEMISAYRKDYLVW 142

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
           +   +QS  D+ L+++NR H+A  + + +     +   + + +  I+G PGE       T
Sbjct: 143 MEYGLQSAHDQTLQTINRGHSAACFERAVHMSHDL--GLNVCAHVILGLPGENRSMMLDT 200

Query: 351 MDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
              +  +               TP +   +
Sbjct: 201 ARFIAALPVQGVKIHSLYVIRKTPLAERYK 230


>gi|226331031|ref|ZP_03806549.1| hypothetical protein PROPEN_04961 [Proteus penneri ATCC 35198]
 gi|225201826|gb|EEG84180.1| hypothetical protein PROPEN_04961 [Proteus penneri ATCC 35198]
          Length = 321

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/182 (18%), Positives = 65/182 (35%), Gaps = 10/182 (5%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V    G   +    +    A+ + D G+  + +   +    R    DG   
Sbjct: 94  CTRRCPFCDV--AHGRPNAPDPQEPEKLAQTIKDMGLRYVVITSVD----RDDLRDGGAQ 147

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
            F+D + ++      +R+       R   D  ++   +     P +         R+ + 
Sbjct: 148 HFADCIAAIRAKNPTIRIETLVPDFRGRMDKALEILTETP---PDVFNHNLENVPRVYRQ 204

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           +           +++R +   PDI   S  +VG  GET+++    M  + K G       
Sbjct: 205 VRPGANYQWSLTLLERFKQAHPDIPTKSGLMVGL-GETNEEIIDVMRDLRKHGVTMLTLG 263

Query: 366 KY 367
           +Y
Sbjct: 264 QY 265


>gi|206576532|ref|YP_002236562.1| radical SAM domain protein [Klebsiella pneumoniae 342]
 gi|206565590|gb|ACI07366.1| radical SAM domain protein [Klebsiella pneumoniae 342]
          Length = 757

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 49/316 (15%), Positives = 98/316 (31%), Gaps = 58/316 (18%)

Query: 161 ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLID 219
              +  D        +   + I  GC   C+FC +    G  I SRS   +++E   + D
Sbjct: 391 PHPAYGDARIPAYEMIRFSINIMRGCFGGCSFCSITEHEGRIIQSRSEDSIINEIEAIRD 450

Query: 220 N--GVCEIT--LLGQNVNAWR----------------------GKGLDGEKCTFSDLLYS 253
              G   +   L G   N +                          +D       +L   
Sbjct: 451 TVPGFTGVISDLGGPTANMYMLRCKSPRAEQTCRRLSCVYPDICPHMDTNHEPTINLYRR 510

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRRH- 310
             E+KG+ ++   +    D++    +   +L    +  YL +  +   +  L  M +   
Sbjct: 511 ARELKGIKKILIASGVRYDIAVEDPRYIKELATHHVGGYLKIAPEHTEEGPLSKMMKPGM 570

Query: 311 -TAYEYRQIIDRI-RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY--AQAFSFK 366
            +   ++++ D   +    +  +   FI   PG  D+D       + K  +   Q  +F 
Sbjct: 571 GSYDRFKELFDTYSKQAGKEQYLIPYFISAHPGTRDEDMVNLALWLKKHRFRLDQVQNFY 630

Query: 367 YSPRLGTPGSNMLEQ--------------VDENVKAERL-LCLQK--------KLREQQV 403
            SP   +       +              V +  K  RL   L +         +R+   
Sbjct: 631 PSPLANSTTMYYTGKNPLGKIGYKSEEVVVPKGDKQRRLHKALLRYHDPANWPLIRQALE 690

Query: 404 SF-NDACVGQIIEVLI 418
           +      +G   + L+
Sbjct: 691 AMGKKHLIGSRRDCLV 706


>gi|283852062|ref|ZP_06369337.1| Radical SAM domain protein [Desulfovibrio sp. FW1012B]
 gi|283572612|gb|EFC20597.1| Radical SAM domain protein [Desulfovibrio sp. FW1012B]
          Length = 500

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 53/266 (19%), Positives = 91/266 (34%), Gaps = 30/266 (11%)

Query: 125 NVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLT-IQ 183
           + +  P   ++   + +    G R+V        KF    +  G  +R  G   + T   
Sbjct: 167 DALPPPDWSHQDHHIWD---GGDRIVPLTPDRTRKF----LARGTLSRVLGRVGYQTMTD 219

Query: 184 EGCDKFCTFCV---VPYTRGI---EISRSLSQVVDEARKLIDNG-VCEITLLGQNVNAWR 236
            GC   CT+CV   V    G       RS+  V+ E    +          +  +    R
Sbjct: 220 RGCPHRCTYCVNDAVKALYGAKGYLRWRSVEHVIAELEDAVRRMPFIGYVWISDDAFFAR 279

Query: 237 GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS-HPRDMSDCLIKAHGDLDVLMPYLHLPV 295
                      + +     + K  + L +T    P  ++   + A  D  ++  YL + V
Sbjct: 280 ---------PLATIREFCRQYKERIGLPFTCLGSPATITPEKMDALVDAGMI--YLQMGV 328

Query: 296 QSGSDRILKSMNRRHTA-YEYRQIIDRIRSVRPDIAISS-DFIVGFPGETDDDFRATMDL 353
           QSGS RI     R+     +    +  I S +  +   S D I+  P E   D   T+  
Sbjct: 329 QSGSARIQALFGRQSMGNDKILAAMAVINSYKDRMLPPSYDIILDTPYEVPADRLETVRF 388

Query: 354 VDKIGYA-QAFSFKYSPRLGTPGSNM 378
           + +I    +   F      GT  + M
Sbjct: 389 ISRIPKPFRLQLFSLVLYPGTKLAAM 414


>gi|219854724|ref|YP_002471846.1| hypothetical protein CKR_1381 [Clostridium kluyveri NBRC 12016]
 gi|219568448|dbj|BAH06432.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 578

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/210 (16%), Positives = 72/210 (34%), Gaps = 12/210 (5%)

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            GK  ++ +  + D  +     +   N K  +  +     GC   C +C+          
Sbjct: 163 QGKMFLNEERELMDMNKIAFPYEEQDNLKNKIVYYEA-SRGCPFSCKYCLSSTIH-KVRF 220

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
             + +V  E + LID  +  I  + +  N               +L   + E        
Sbjct: 221 LDIERVKREIKFLIDKNIALIKFVDRTFNC--------NPKFTLELWKFIIECDTQTTFH 272

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +  S    ++   I    +         + VQ+ ++ +L ++N R+  ++  +   +   
Sbjct: 273 FEISADI-LTGEEIALLKESPKGRIQFEIGVQTTNENVLNNIN-RYVKFKDIKDKVKKIK 330

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLV 354
              +I    D I G PGE    F+ + + V
Sbjct: 331 ANNNIKQHLDLIAGLPGEDFKSFKKSFNKV 360


>gi|108762747|ref|YP_633653.1| radical SAM domain-containing protein [Myxococcus xanthus DK 1622]
 gi|108466627|gb|ABF91812.1| radical SAM domain protein [Myxococcus xanthus DK 1622]
          Length = 671

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 43/270 (15%), Positives = 77/270 (28%), Gaps = 35/270 (12%)

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           A      +D  Y +        +          V   + +  GC   CTFC +    G  
Sbjct: 292 AEGKSVAMDELYDLPFNRVPHPMYRERIPAYETVKHSIVLMRGCFGGCTFCSITEHEGRV 351

Query: 203 I-SRSLSQVVDEARKLIDNGVCEITLL---GQNVNAWR---------------------- 236
           I SRS   V+ E R L   G    T+    G   N ++                      
Sbjct: 352 IQSRSAESVLREVRALRRMGDFRGTITDLGGPTANMYKLKCKSEDIEKRCRKLSCVHPGV 411

Query: 237 GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT---SHPRDMSDCLIKAHGDLDVLMPYLHL 293
            + L  +      L+  + +  G+  +   +       + S   +K       +   L +
Sbjct: 412 CENLQTDHGPLISLMQDVRKEDGVKHVFIASGVRYDLAERSPEYVKELAAH-HVGGQLSV 470

Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSD----FIVGFPGETDDDFRA 349
             +  S R+L+ M +      + +          +          FI G PG T +D   
Sbjct: 471 APEHVSPRVLEKMKKPG-IESFERFQQMFACASEEAGKEQYDIPYFISGHPGSTLEDMVE 529

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
               + + G        + P      + M 
Sbjct: 530 LALWLKQNGKRPRQVQDFIPTPMAMATAMY 559


>gi|297581324|ref|ZP_06943248.1| lipoic acid synthetase [Vibrio cholerae RC385]
 gi|297534640|gb|EFH73477.1| lipoic acid synthetase [Vibrio cholerae RC385]
          Length = 321

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/211 (14%), Positives = 71/211 (33%), Gaps = 12/211 (5%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V    G   +    +    A+ + D  +  + +   +    R    DG   
Sbjct: 94  CTRRCPFCDV--AHGRPNAPEAEEPKKLAQTIHDMKLKYVVITSVD----RDDLRDGGAQ 147

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
            F+D    +  +   +++       R   +  ++A  D     P +       + R+ + 
Sbjct: 148 HFADCNREIRALNPHIKIETLVPDFRGRMEVALEALKDNP---PDVFNHNLETAPRLYRK 204

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           +          +++ + +  +P +   S  ++G  GET ++    +  +   G       
Sbjct: 205 VRPGANYKWSLELLRQFKEQQPHVPTKSGLMMGL-GETKEEIVEVLKDLRAHGVTMLTLG 263

Query: 366 KYSP--RLGTPGSNMLEQVDENVKAERLLCL 394
           +Y    R   P    +   + +   E  L L
Sbjct: 264 QYLAPSRHHLPVERYVPPAEFDELKEIALEL 294


>gi|167630755|ref|YP_001681254.1| radical sam protein, putative [Heliobacterium modesticaldum Ice1]
 gi|167593495|gb|ABZ85243.1| radical sam protein, putative [Heliobacterium modesticaldum Ice1]
          Length = 655

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 58/313 (18%), Positives = 114/313 (36%), Gaps = 37/313 (11%)

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           V D D +       +  +D  ++R       L +  GC + C FC           RS  
Sbjct: 264 VADLDKAYFPTTSLVPFMDVVHDRV-----MLEVLRGCSRACRFCQAGSIYRPVRERSPE 318

Query: 209 QVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
            +  +A  L+   G  EI L   +   +        +    +L+ + +E K  V L   +
Sbjct: 319 TLKRQAEALVKATGYDEIALTSLSTADYTCV-----EPLIKELIATHAEQK--VGLSLPS 371

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
                 S  L K    +      L    ++G+ R+   +N+  T  +  + ++   S   
Sbjct: 372 LRVDAFSVDLAKEVQKVRK--TGLTFAPEAGTQRLRDVINKGVTESDLMETVESAFSNGW 429

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGY----------------AQAFSFKYSPRL 371
             ++   F++G P ET++D      L +++ Y                    +  + P+ 
Sbjct: 430 T-SLKLYFMIGLPTETEEDLEGIARLAEQVVYKGTAILREKGMNKSVRVTVSTSSFVPKA 488

Query: 372 GTPGSNMLEQVDENVKAERLLCLQKKL--REQQVSFNDACVGQIIEVLIEKHGKEKGKLV 429
            TP      Q       E+   L+K+L  R    S++DA +   +E +  K  +   +++
Sbjct: 489 QTP-FQWEPQAPMADLEEKQAFLKKRLRDRRISYSWHDARI-SFLEAVFAKGDRRLAQVL 546

Query: 430 GRSPWLQSVVLNS 442
            R+ W +  V + 
Sbjct: 547 HRA-WQKGCVFDG 558


>gi|260590052|ref|ZP_05855965.1| putative oxygen-independent coproporphyrinogen III oxidase [Blautia
           hansenii DSM 20583]
 gi|260539564|gb|EEX20133.1| putative oxygen-independent coproporphyrinogen III oxidase [Blautia
           hansenii DSM 20583]
          Length = 381

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 38/204 (18%), Positives = 69/204 (33%), Gaps = 12/204 (5%)

Query: 186 CDKFCTFC--VVPYTRGIEISRSLSQVVDEAR--KLIDNGVC-EITLLGQNVNAWRGKGL 240
           C K C +C  +       E  + ++ ++ E    +    G       +G    +      
Sbjct: 14  CVKKCEYCDFLSWNAGEEERQQYVAALLSEIESYREFAKGYRVSTIFIGGGTPSV----- 68

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300
                   D+L  + EI  L R    T      +    K     +  +  L + +QS  D
Sbjct: 69  -LLPKQMEDILQKIYEIFELERRPEITVEVNPGTVDEEKLQCYKENGVNRLSMGLQSVKD 127

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
             L+ + R HT  E+ +  +  R    D  IS D I   PG+T  +++  ++        
Sbjct: 128 EKLRLLGRIHTYQEFVESYELARKAGFD-NISIDLISSVPGQTLQEWKEELETAAAQNPE 186

Query: 361 QAFSFKYSPRLGTPGSNMLEQVDE 384
               ++     GTP      +  E
Sbjct: 187 HISVYQLIIEEGTPFYEKYAEHPE 210


>gi|15668663|ref|NP_247462.1| hypothetical protein MJ_0486 [Methanocaldococcus jannaschii DSM
           2661]
 gi|2496003|sp|Q57910|Y486_METJA RecName: Full=Uncharacterized protein MJ0486
 gi|1591189|gb|AAB98477.1| conserved hypothetical protein [Methanocaldococcus jannaschii DSM
           2661]
          Length = 322

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 45/247 (18%), Positives = 78/247 (31%), Gaps = 27/247 (10%)

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK----FCTFCVVPYTRGIEI 203
           +++D  YS    F +  I      +++     + I  GC       C FC      G  I
Sbjct: 12  KIIDEIYSEGYLFAQYGIYIKKKFKQKIFKIPVDIGLGCPHKKNGGCIFC---PEMGRPI 68

Query: 204 SRS--------LSQVVDEARKLIDNGVCEITLL---GQNVNAWRGKGLDGEKCTFSDLLY 252
           S            Q+  +       G  +  +    G N  A   K    E   FS    
Sbjct: 69  SVKYCSAKIPLKEQIKKQMENQKKKGFKKFYIYFYPGTNTYAPAEKLK--EIWDFSLSYK 126

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
            +  +    R         D+    ++   D+     ++ L VQS   + L+ +NR H  
Sbjct: 127 EVIGLSIGTRPDCLEKEKLDILAEYVENGYDI-----WIDLGVQSMHQKTLEILNRGHDV 181

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
            +  + I         I +    I+G PGE+  +   T  ++  +       +      G
Sbjct: 182 SDIIKAIKDCHKR--GIKVCGHVILGLPGESWKEMMETAKILSLLEIEAVKIYPLVVVKG 239

Query: 373 TPGSNML 379
           T    M 
Sbjct: 240 TKLEEMY 246


>gi|317057717|ref|YP_004106184.1| Radical SAM domain-containing protein [Ruminococcus albus 7]
 gi|315449986|gb|ADU23550.1| Radical SAM domain protein [Ruminococcus albus 7]
          Length = 341

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/197 (16%), Positives = 63/197 (31%), Gaps = 9/197 (4%)

Query: 185 GCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK 244
           GC   C FC      G +       V     + +        +    +  + G      +
Sbjct: 13  GCPHKCAFCDQRTITGKQKLPHKEDVERACLQALGQVDD---ISDTEIAFFGGSFTAIPR 69

Query: 245 CTFSDLLYSLSEI--KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
               +LL +  +   +G  +    ++ P  ++  ++         +  + L  QS SD +
Sbjct: 70  EYMLELLSAAYKFVGEGKFKGIRLSTRPDYINREVLDILKKYG--VTSIELGAQSMSDEV 127

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           L++  R HTA + RQ    IR       +    +VG           T + +  I     
Sbjct: 128 LEANERGHTAEDVRQASRLIREY--GFELGLQMMVGLYKSGHRQEDETFNEIMAIHPDTV 185

Query: 363 FSFKYSPRLGTPGSNML 379
             +       T  + +L
Sbjct: 186 RIYPVVILKHTRLAELL 202


>gi|257055093|ref|YP_003132925.1| lipoyl synthase [Saccharomonospora viridis DSM 43017]
 gi|256584965|gb|ACU96098.1| lipoate synthase [Saccharomonospora viridis DSM 43017]
          Length = 333

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 43/249 (17%), Positives = 87/249 (34%), Gaps = 23/249 (9%)

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQ-EGCDKFCTFCVVPYTRGIEISRSLSQVVD 212
           ++V ++    +I +   +R+    A   I  + C + C FC +   +  E  R   +   
Sbjct: 50  HTVCEEAGCPNIYECWEDRE----ATFLIGGDQCTRRCDFCQIDTGKPAEFDR--DEPRR 103

Query: 213 EARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
            A  +   G+   T+ G      R    DG    +++ +  +  +     +         
Sbjct: 104 VAESVRAMGLRYSTVTGV----ARDDLPDGGAWLYAETVRQIHALNPGTGVELLIPDFNA 159

Query: 273 MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAIS 332
             + L +  G    ++ +    V     RI K +          ++I + R     +   
Sbjct: 160 NEEQLAEVFGSEPEVLAHNLETV----PRIFKRIRPGFRYERSLEVIRKAREA--GLVTK 213

Query: 333 SDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLL 392
           S+ I+G  GET ++   TM  + + G       +Y  R     S     VD  VK E  +
Sbjct: 214 SNLILGM-GETPEEVEPTMRDLVEAGCEILTITQYL-RP----SVRHHPVDRWVKPEEFV 267

Query: 393 CLQKKLREQ 401
              +  ++ 
Sbjct: 268 EHTRVAKKL 276


>gi|153001833|ref|YP_001367514.1| lipoyl synthase [Shewanella baltica OS185]
 gi|166230438|sp|A6WRL2|LIPA_SHEB8 RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|151366451|gb|ABS09451.1| lipoic acid synthetase [Shewanella baltica OS185]
          Length = 321

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/184 (14%), Positives = 58/184 (31%), Gaps = 14/184 (7%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V    G  +     + V  A+ + D  +  + +   +    R    DG   
Sbjct: 94  CTRRCPFCDV--AHGRPLKPDAEEPVKLAQTIRDMKLKYVVITSVD----RDDLRDGGAQ 147

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLD--VLMPYLHLPVQSGSDRIL 303
            F+D +  + ++   +++       R   D  +         V    L            
Sbjct: 148 HFADCIREIRKLNPDIKIETLVPDFRGRIDAALDILSTEPPDVFNHNLETAPMHY----- 202

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           +             ++ R +   P++   S  ++G  GET+D+    +  +         
Sbjct: 203 RKARPGANYQWSLDLLKRFKERHPNVPTKSGLMMGL-GETNDEIAQVLRDLRAHKVEMLT 261

Query: 364 SFKY 367
             +Y
Sbjct: 262 LGQY 265


>gi|187929361|ref|YP_001899848.1| coproporphyrinogen III oxidase [Ralstonia pickettii 12J]
 gi|309781784|ref|ZP_07676517.1| oxygen-independent coproporphyrinogen III oxidase [Ralstonia sp.
           5_7_47FAA]
 gi|187726251|gb|ACD27416.1| oxygen-independent coproporphyrinogen III oxidase [Ralstonia
           pickettii 12J]
 gi|308919425|gb|EFP65089.1| oxygen-independent coproporphyrinogen III oxidase [Ralstonia sp.
           5_7_47FAA]
          Length = 422

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/211 (16%), Positives = 75/211 (35%), Gaps = 23/211 (10%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C +C        E      + +   R+ ++  +  +   G++V+     G      
Sbjct: 51  CVRKCPYCDFNSHAEPEQGIPEERFLAAVRQDLEAALPMVW--GRHVHTIFIGGGTPSLL 108

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY-------LHLPVQSG 298
           +   L   LS+I    R+        +++        + +    Y       L + +QS 
Sbjct: 109 SAQGLDRLLSDI----RMLLPVDADAEITMEANPGTFEAERFRSYRASGVNRLSIGIQSF 164

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGET----DDDFRATMDLV 354
           +D  L+++ R H+A E R  ID  R+   +I +  D +   PG+T    + D  A +   
Sbjct: 165 NDAYLQALGRIHSAAEARAAIDMARAHFDNINL--DLMFALPGQTLAECEADVEAALSF- 221

Query: 355 DKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
                     +  +    T  +     + ++
Sbjct: 222 ---DTNHVSLYHLTLEPNTYFAKYPPALPDD 249


>gi|115937444|ref|XP_001183423.1| PREDICTED: similar to receptor tyrosine kinase, partial
           [Strongylocentrotus purpuratus]
          Length = 767

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 23/53 (43%)

Query: 167 DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLID 219
           D    R+  +   L I  GC   CT+C   + RG   S    ++V  A++  D
Sbjct: 715 DLPKIRRNPLVEILAINTGCLNQCTYCKTKHARGELGSYPPEELVARAKQSFD 767


>gi|323141279|ref|ZP_08076175.1| radical SAM domain protein [Phascolarctobacterium sp. YIT 12067]
 gi|322414236|gb|EFY05059.1| radical SAM domain protein [Phascolarctobacterium sp. YIT 12067]
          Length = 629

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 64/308 (20%), Positives = 115/308 (37%), Gaps = 40/308 (12%)

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           A   KRV++   SV+  F    IV  G      +   L +  GC + C FC         
Sbjct: 233 AVIQKRVMEDMNSVD--FPTSPIVPFGEIVHDRI--MLEVFRGCSRGCRFCHAGMVYRPV 288

Query: 203 ISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
             R    ++D +RKL+DN G  EI+L+  +   +         C    +   + E K   
Sbjct: 289 RERKPEVLMDLSRKLVDNTGYNEISLVSLSSADYS--------CLAPLVHKMIGEFK-DE 339

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPV--QSGSDRILKSMNRRHTAYEYRQII 319
           R+  +    R  S C+  A       +    L    ++GS ++   +N+  T  +    +
Sbjct: 340 RVSVSLPSLRIDSFCV--AIAKEVQAVRKSGLTFAPEAGSQKMRDVINKGVTEEDLMNAV 397

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ------------AFSFKY 367
                   + ++   F++G P ETD+D  A  DL  K+ Y                +  +
Sbjct: 398 GAAFESGWN-SVKLYFMIGLPYETDEDVLAIADLARKVQYKYFQITGKRGCKVTVSASSF 456

Query: 368 SPRLGTPGSNMLEQVDENVKAERLLCLQKKLRE---QQVSFNDACVGQIIEVLIEKHGKE 424
            P+  T       Q D      +   L+ ++++     ++++DA  G      IE     
Sbjct: 457 VPKPYT-AFQWFAQNDLEEIRRKQFLLKDEIKKYKNITLNYHDAKTGT-----IEAVFAR 510

Query: 425 KGKLVGRS 432
             + VG++
Sbjct: 511 GDRRVGKA 518


>gi|292670687|ref|ZP_06604113.1| radical SAM domain protein [Selenomonas noxia ATCC 43541]
 gi|292647714|gb|EFF65686.1| radical SAM domain protein [Selenomonas noxia ATCC 43541]
          Length = 875

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 55/293 (18%), Positives = 101/293 (34%), Gaps = 32/293 (10%)

Query: 129 GPQTYYRLPELLERARFGKRVV-DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCD 187
           G  +  R      R    KRVV D D  +  +   +  +D  +NR       L +  GC 
Sbjct: 216 GNFSEMRPLHPAARPIIYKRVVRDMDKVLSVEHPIVPYMDIVHNR-----MMLELFRGCS 270

Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCT 246
           + C FC           R+  ++   A  L ++ G  E++L   +   +   G       
Sbjct: 271 RGCRFCQAGIAYRPARERTEERLRQMANGLAESTGYDEMSLTSLSSADYSCLG-----RL 325

Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306
             DL+   +E K    L          S  L      +      L    ++G+ R+   +
Sbjct: 326 VDDLMEDYAEEKLSFSLPSLRIDS--FSIDLAHKMQAVRK--SGLTFAPEAGTQRMRDVI 381

Query: 307 NRRHTAYEYRQII-DRIRSVRPDIAISSDFIVGFPGETDDDF-------RATMDLVDKIG 358
           N+  T     +      R     + +   F++G P ETD+D        +  +DL  +I 
Sbjct: 382 NKGVTEENLLEACGAAFRHGWKQVKLY--FMMGLPTETDEDIIGIAQLAKKVVDLYTEIR 439

Query: 359 -----YAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFN 406
                        + P+  TP      Q+       R   L++ + ++ ++F+
Sbjct: 440 GKRGCKVTVSVSCFVPKPYTP-FQWFGQLPIEEFQRRQQLLKEHITDRSITFH 491


>gi|220929399|ref|YP_002506308.1| oxygen-independent coproporphyrinogen III oxidase [Clostridium
           cellulolyticum H10]
 gi|219999727|gb|ACL76328.1| oxygen-independent coproporphyrinogen III oxidase [Clostridium
           cellulolyticum H10]
          Length = 380

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 42/216 (19%), Positives = 79/216 (36%), Gaps = 21/216 (9%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C   C +C      G          +D A     +   EI L    +  +    +     
Sbjct: 16  CSSKCNYCDFNSYTGK---------IDHADNYFKSLKKEIELYKAELRHYIINTIFIGGG 66

Query: 246 TFSDLLYS-LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY-------LHLPVQS 297
           T S +    + EI    R  Y  S   ++S          + L  Y       + + +Q+
Sbjct: 67  TPSVVNEQYILEILEKCRTEYNISENCEISIESNPGTLSNEKLKAYKNAGINRISIGLQA 126

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
             D++LK + R H+  ++ + +   +S   +  I+ D I G PG++  D++ T+D +  +
Sbjct: 127 YQDKLLKYLGRCHSHKDFTESVKNAKSAGFE-NINGDIIFGIPGQSLGDWKETLDYLVSL 185

Query: 358 GYAQAFSFKYSPRLGTPGSNMLEQ---VDENVKAER 390
           G     ++       T    M EQ   V    + +R
Sbjct: 186 GINHISAYSLKIEEETKFGRMEEQGSLVPVEDELDR 221


>gi|317502187|ref|ZP_07960361.1| radical SAM domain-containing protein [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|331088752|ref|ZP_08337662.1| hypothetical protein HMPREF1025_01245 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|316896396|gb|EFV18493.1| radical SAM domain-containing protein [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|330407275|gb|EGG86778.1| hypothetical protein HMPREF1025_01245 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 574

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 45/298 (15%), Positives = 93/298 (31%), Gaps = 38/298 (12%)

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +  +  L     K   D  + + G     + + +L + P V  V+  +      ELL   
Sbjct: 68  IEYVGQLLRELPKILPDTKIWLGGPEVSYDAKAVLEQYPKVEGVMCGEGEETFAELLRVY 127

Query: 144 RFGKRVVDTDYSVEDKFERLS---------------------------IVDGGYNRKRGV 176
              K  + +    ++ F  +                            + D   + +  +
Sbjct: 128 HEEKGALCSGVKRDELFSDIPGIAYRNKDKAVIQNDFRPVIDLSTIPFVYDHIEDFENRI 187

Query: 177 TAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR 236
             + +   GC   C++C+          R +  V  E +  ID  V ++  + +  N   
Sbjct: 188 IYYES-SRGCPFSCSYCL-SSIDKCLRFREIELVKKELQFFIDKKVPQVKFVDRTFNCRH 245

Query: 237 GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQ 296
              +                  G+    +  S         I     +   +  L + VQ
Sbjct: 246 DHAMAIWTYIHEHD-------NGITNFHFEVSADLLNEKE-IALINRMRPGLIQLEIGVQ 297

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           S ++  ++ +NR         I+D+I+    ++    D I G P E  + F  + D V
Sbjct: 298 SANEITIREINRTMKIDVLSTIVDKIKKGN-NVHQHLDLIAGLPYEGYESFGKSFDRV 354


>gi|190410012|ref|YP_001965536.1| probable cobalamin B12-binding/radical SAM [Sinorhizobium meliloti]
 gi|125631042|gb|ABN47043.1| probable cobalamin B12-binding/radical SAM [Sinorhizobium meliloti
           SM11]
          Length = 532

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/203 (14%), Positives = 72/203 (35%), Gaps = 13/203 (6%)

Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS- 208
           V+ +     +       +      +  T  + I  GC   C +C +P   G  +S   + 
Sbjct: 141 VEGNALRPPEHWLAPSPERYAAVSKNPTGIIEIGRGCPFDCEYCSIPRVFGRRLSFKAAR 200

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
            +  E +  + + +  + L+     A        ++    ++L +L    G V      +
Sbjct: 201 DISSEVQFWLSHDIRHLHLVDDTFTA--------DRRHVEEVLDALGPFSGTV-TWSAMT 251

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
               +   L+            +   + +G+    + M++R + Y     +    +V   
Sbjct: 252 RADLVDRQLLTKLASAG--CVSILYGIDAGNASTRRRMSKRASRYPELADLANW-NVEAG 308

Query: 329 IAISSDFIVGFPGETDDDFRATM 351
           I+ S  FI+ +  +T +D  A++
Sbjct: 309 ISPSFYFIIDYVSDTIEDLYASL 331


>gi|82617237|emb|CAI64143.1| conserved hypothetical protein [uncultured archaeon]
          Length = 355

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 56/320 (17%), Positives = 105/320 (32%), Gaps = 37/320 (11%)

Query: 79  KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTY---YR 135
               FL  + N+         ++ VV  G  A     EILR+S +  V+ G         
Sbjct: 30  MEDCFLSELYNIAQIVKGYDENIHVVTGGVSATTRDLEILRKSVVDFVIRGEGETPLLTL 89

Query: 136 LPELLERARFGK----------RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAF------ 179
              L++   F K          R+V TD       E L   D        + A       
Sbjct: 90  SNALIQNEDFEKIRGISFMKDDRIVQTDNQSFIDLETLPFPDRDSYPLSKLYALNGGIDL 149

Query: 180 LTIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK 238
           +    GC   C+FC  P     +  +R L  +V+E   L D G   + +   N    +  
Sbjct: 150 VYASRGCPFNCSFCNAPAFWKRQWRARELKDIVEELSILGDLGAKIVHIYDLNFGFNKKW 209

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
             +  K    + +  + + +             D +   +K     D         +++ 
Sbjct: 210 VKNICKGIRREKIDIIWDCE---------LALIDFNMSFLKTI--YDGNCRGAFCGIEAV 258

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGET----DDDFRATMDLV 354
           S  +L S+N+ + + +  + ++  +     I +   ++ G P +         R    L+
Sbjct: 259 SQSVLDSVNKSYKSQDLVKYLNNAKDA--GIHVDGGYVFGLPEDNLSGMRTMTRLACRLL 316

Query: 355 DKIGYAQAFSFKYSPRLGTP 374
           ++        F + P  GT 
Sbjct: 317 EEDLVETPAPFLFVPFKGTE 336


>gi|325849588|ref|ZP_08170826.1| iron-only hydrogenase maturation rSAM protein HydE [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
 gi|325480069|gb|EGC83146.1| iron-only hydrogenase maturation rSAM protein HydE [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
          Length = 344

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/208 (14%), Positives = 69/208 (33%), Gaps = 17/208 (8%)

Query: 176 VTAFLTIQEGCDKFCTFCVVPYTR-GIEISR-SLSQVVDEARKLIDNGVCEITLLGQNVN 233
           V   +     C   C +C +  +   +E  R S  +++  A+     G     L G    
Sbjct: 45  VRGLIEFSNFCKNNCYYCGIRKSNLNVERYRLSFDEIIMCAKIGYKLGYRTFVLQG---- 100

Query: 234 AWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP-RDMSDCLIKAHGDLDVLMPYLH 292
              G+ L  +      ++  + +I     +  +     ++       A  D  +L     
Sbjct: 101 ---GEDLKFKDEDICKIVEEIKKIHPDCAITLSIGERSKEAYRSFFNAGADRYLLREET- 156

Query: 293 LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352
               S  +   K   +  +    R+ +  ++ +     +   F+VG P + D+D  + + 
Sbjct: 157 ----SNKNHYYKLHPKEMSFENRRKALFDLKEI--GFQVGGGFMVGSPYQKDEDLISDLR 210

Query: 353 LVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
            + ++         Y  +  TP  +M  
Sbjct: 211 FLQELKPDMIGIGPYLSQHDTPFKDMEN 238


>gi|324998261|ref|ZP_08119373.1| coproporphyrinogen III oxidase, anaerobic [Pseudonocardia sp. P1]
          Length = 395

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 46/235 (19%), Positives = 82/235 (34%), Gaps = 18/235 (7%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEK 244
           C   C +C        E++   S         ++    EI L  + V     + +  G  
Sbjct: 22  CATRCGYCDFNTYTASELAGDASSP----EGWLEAARREIALAARTVGDRTVETVFVGGG 77

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDC-------LIKAHGDLDVLMPYLHLPVQS 297
                    LS +   +R  +  +   +++              G  D     + L +QS
Sbjct: 78  TPSLLGADRLSAVMAAIRSEFRVAPGCEVTTESNPESTSPEFFAGIRDGGYTRVSLGMQS 137

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
            +  +L  ++R HT           R+      ++ D I   PGETDDD R + D V + 
Sbjct: 138 AARHVLAVLDRTHTPGRAVDAAREARAAGFG-HVNLDLIYATPGETDDDLRRSADAVLEA 196

Query: 358 GYAQAFSFKYSPRLGTPGSNM-----LEQVDENVKAERLLCLQKKLREQQVSFND 407
           G     ++      GT  +       L   D++V A R   L  +LR+  + + +
Sbjct: 197 GVDHVSAYALIVEDGTALARRVRRGELPAPDDDVAATRYELLDARLRDAGLRWYE 251


>gi|15669156|ref|NP_247961.1| hypothetical protein MJ_0966 [Methanocaldococcus jannaschii DSM
           2661]
 gi|41018404|sp|Q58376|Y966_METJA RecName: Full=Uncharacterized protein MJ0966
 gi|1591630|gb|AAB98968.1| conserved hypothetical protein [Methanocaldococcus jannaschii DSM
           2661]
          Length = 444

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 49/288 (17%), Positives = 102/288 (35%), Gaps = 26/288 (9%)

Query: 80  VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGE-------EILRRSPIVNVVVGPQT 132
              +   I+ +K+ R      + V    CV +            I+      +V++    
Sbjct: 64  ENDYFNAIKIIKDLRKNNPNAIFVAGGPCVMENFFPIAEFFDVFIVGEIEGSDVMLKVIN 123

Query: 133 YYRLPELLERARFGKRVVDTDYSVEDKFERLSIV-DGGYNRKRGVTAFLTIQEGCDKFCT 191
                E +      K  V   Y  +   +   I          G +  L I  GC + C 
Sbjct: 124 REFDVEGVYSKYLEKDKVKRIYPKKLTIDDYPIYQPTSEEGAYGKSFLLEIGRGCPRRCR 183

Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLID-NGVCEITLLGQNVNAWRGKGLDGEKCTFSDL 250
           FC+          R L  ++  A + +  N V ++ L+  +V  ++            +L
Sbjct: 184 FCLARAIYYPPRFRKLDDLMYLAEEGVKVNKVNKVALIAPSVGDYKY---------IVEL 234

Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
              L ++   V +  ++     ++D L++           L +  ++GS+R+ + + +  
Sbjct: 235 CNFLDDMG--VHISPSSLRADTLNDDLMRILKP-----KTLTIAPEAGSERLREFIKKDI 287

Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
              +    ID  +    +  +   F+VG P ETD+D    ++L  K+ 
Sbjct: 288 RERDIANAIDLAKKFGVE-KVKLYFMVGIPTETDEDIEELINLTKKVK 334


>gi|332307656|ref|YP_004435507.1| oxygen-independent coproporphyrinogen III oxidase [Glaciecola
           agarilytica 4H-3-7+YE-5]
 gi|332174985|gb|AEE24239.1| oxygen-independent coproporphyrinogen III oxidase [Glaciecola
           agarilytica 4H-3-7+YE-5]
          Length = 465

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/198 (20%), Positives = 77/198 (38%), Gaps = 25/198 (12%)

Query: 186 CDKFCTFCVVPYTRGIEISRS-------LSQVVDEARKLIDNGVCEITLLGQN----VNA 234
           C + C +C          S++       L ++  +A  L    V ++ L G       +A
Sbjct: 71  CHRLCYYCGCNKIVTRLQSKADIYLDYLLKEIALQAEVLGHKPVTQLHLGGGTPNFLTDA 130

Query: 235 WRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP 294
              + +DG K  F+    +   I+           PR+M+   I +   +      L + 
Sbjct: 131 QLQRLVDGLKGHFNFTDDAQLSIE---------IDPRNMTPQRIDSMAKMG--FNRLSIG 179

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI-AISSDFIVGFPGETDDDFRATMDL 353
           +Q     + +++NR  ++    ++I R +       +I+ D I G P +T D F  T+D 
Sbjct: 180 IQDTDPTVQEAINRVQSSELIERLIKRAKEK--GFRSINLDLIYGLPFQTPDTFARTLDF 237

Query: 354 VDKIGYAQAFSFKYSPRL 371
           V K+   +   F Y+   
Sbjct: 238 VHKMQIERVSLFSYAHLP 255


>gi|170758883|ref|YP_001788925.1| biotin synthase [Clostridium botulinum A3 str. Loch Maree]
 gi|169405872|gb|ACA54283.1| radical SAM domain protein [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 348

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/226 (13%), Positives = 78/226 (34%), Gaps = 16/226 (7%)

Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI-EISR-SL 207
           +D +      ++        Y+ K  +   +     C   C +C +       E  R S 
Sbjct: 26  IDEENKKYLIYKAHETSLKYYSNKVYLRGLIEFTNYCKNGCLYCGISCQNNNAERYRLSK 85

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
            ++++   K    G     L          +G +    T   ++  +  IK L      T
Sbjct: 86  EEILNCCSKGYSLGYRTFVL----------QGGEDPYYTDDKIIDIVKSIKNLFPDCAIT 135

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
               +    + K     D  +    L  ++ S+ + + ++   +    R+ +  ++ +  
Sbjct: 136 LSIGEKDYDIYKKF--YDAGVDRYLLRHETASENLYEKLHPDMSFENRRRCLKNLKEI-- 191

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
              + + F++G PG+T++D+   +  + ++         + P   T
Sbjct: 192 GYQVGAGFMIGLPGQTNEDYVNDLIFLKELKPHMVGIGPFIPHKDT 237


>gi|319425540|gb|ADV53614.1| conserved hypothetical protein [Shewanella putrefaciens 200]
          Length = 309

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 43/238 (18%), Positives = 78/238 (32%), Gaps = 34/238 (14%)

Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW--------RGKG 239
             CTFC V        S   + V+    + ++ G            A             
Sbjct: 43  GGCTFCNV-----ASFSYQTADVL-SITEQLEQGKSRYREAKPQAQADKFIAYFQAYTST 96

Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL--DVLMPYLHLPVQS 297
            D  +   +    ++    G +      + P  + D ++        D +  +L L +Q+
Sbjct: 97  YDEYQVLMAKYDEAVK--DGEIVGLCVGTRPDCVPDNVLDLLARYQADGVDVWLELGLQT 154

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
            +D  L+ +NR H    Y   + R R+    + + +  I+G P ET  D+ AT+  V + 
Sbjct: 155 ANDETLRRINRGHDFACYCDTVSRARAR--GLKVCTHLILGLPNETHCDYMATLAAVLQQ 212

Query: 358 GYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIE 415
           G             G+  +          KA R   L        +      VG++I 
Sbjct: 213 GVDGLKLHPLHIVEGSTMA----------KAWRSGRLPLL----SLEDYARSVGEMIR 256


>gi|284053553|ref|ZP_06383763.1| radical SAM domain-containing protein [Arthrospira platensis str.
           Paraca]
          Length = 546

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 62/273 (22%), Positives = 107/273 (39%), Gaps = 31/273 (11%)

Query: 177 TAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR 236
              + +   C + C FC+  Y      + +L   +  A          + LLG +V    
Sbjct: 225 IYMVEVVRSCPEMCRFCLASYLTLPFRTANLESSLIPAINRGLTVTKRLGLLGASVTQH- 283

Query: 237 GKGLDGEKCTFSDLLYSLSEIK-GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPV 295
                     F++LL  LS+ +   VRL   +     ++  L +     D     + + V
Sbjct: 284 --------PEFNELLDYLSKPEYDDVRLSLASVRTNTVTVKLAETLTKRDT--RSITIAV 333

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI-AISSDFIVGFPGETDDDFRATMDLV 354
           +SGSDR+ K +N++    E  Q    I +    + ++    +VG PGE  +D  AT+ ++
Sbjct: 334 ESGSDRLRKIINKKLDNDEIIQAA--INAKAGGLKSLKLYGMVGIPGEESEDLDATVAMM 391

Query: 355 DKIGYA------QAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFN-D 407
            +I  A            + P+  TP            K  RL  L+KKLR   + F  +
Sbjct: 392 QEIKKAAPGLRLTLGCSTFVPKSHTP-FQWFGVNPAAEK--RLKFLEKKLRSNGMDFRPE 448

Query: 408 ACVGQIIEVLIEKHGK------EKGKLVGRSPW 434
           +    +I+ LI +  +      EK +  G SP 
Sbjct: 449 SYRWSVIQALISRGDRRLSYLLEKVRHYGDSPG 481


>gi|261868785|ref|YP_003256707.1| lipoyl synthase [Aggregatibacter actinomycetemcomitans D11S-1]
 gi|261414117|gb|ACX83488.1| lipoic acid synthetase [Aggregatibacter actinomycetemcomitans
           D11S-1]
          Length = 320

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/214 (14%), Positives = 71/214 (33%), Gaps = 10/214 (4%)

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           + +    E  S  +       G   F+ +   C + C FC V    G  ++    +    
Sbjct: 61  HGLHSVCEEASCPNLHECFNHGTATFMILGAICTRRCPFCDV--AHGKPLAPDPEEPRKL 118

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
           A  + D  +  + +   +    R    D     F+D +  +  +   +++       R  
Sbjct: 119 AETIQDMKLRYVVITSVD----RDDLPDRGAGHFADCVREIRALNPNIKIEILVPDFRGR 174

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
            +  ++   D     P +         R+ + +          +++   +++ P I   S
Sbjct: 175 IELALEKLKDNP---PDVFNHNLENVPRLYREIRPGADYQWSLRLLKEFKAMFPHIPTKS 231

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
             +VG  GET+D+    M  +   G       +Y
Sbjct: 232 GLMVGL-GETNDEILEVMQDLRDHGVTMLTLGQY 264


>gi|299823065|ref|ZP_07054951.1| radical SAM protein [Listeria grayi DSM 20601]
 gi|299816594|gb|EFI83832.1| radical SAM protein [Listeria grayi DSM 20601]
          Length = 318

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 36/195 (18%), Positives = 66/195 (33%), Gaps = 19/195 (9%)

Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDE--ARKLIDNGVCEITLLG-----QNVNAWRGKGL 240
             CTFC V  +      R+L         R  +     + + +       N +A   +  
Sbjct: 51  GGCTFCSVAGSGDFAGDRALDLKTQFAVVRDQMHQKWKKASYIAYFQAFTNTHAPVSE-- 108

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL-DVLMPYLHLPVQSGS 299
                   +    +    G+V L    + P  + D ++    +L +    ++ L +QS  
Sbjct: 109 ------LREKYEQVMNEPGVVGLSI-ATRPDCLPDDVVDYLAELNERTYLWIELGLQSAH 161

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
           D     +NR H    Y + + ++++    I + +  I G P ET +    T   V   G 
Sbjct: 162 DETGILINRAHDYACYLEGVQKLKAR--GIRVCTHIINGLPKETPEMMMETARKVVDSGV 219

Query: 360 AQAFSFKYSPRLGTP 374
                       GTP
Sbjct: 220 DGIKIHLLHLLKGTP 234


>gi|323701826|ref|ZP_08113496.1| Radical SAM domain protein [Desulfotomaculum nigrificans DSM 574]
 gi|323533130|gb|EGB22999.1| Radical SAM domain protein [Desulfotomaculum nigrificans DSM 574]
          Length = 363

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/202 (13%), Positives = 62/202 (30%), Gaps = 17/202 (8%)

Query: 175 GVTAFLTIQEGCDKFCTFCVVPYTRGIEISR--SLSQVVDEARKLIDNGVCEITLLGQNV 232
            +   +     C   C +C +  +            +V+  A+   + G   I L     
Sbjct: 57  HLRGIIEFSNYCCNDCYYCGLRRSNKDIKRYRIPREEVLAAAKHAAELGYGTIVLQS--- 113

Query: 233 NAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLH 292
               G+ L       ++++  +  I                   + +A  D         
Sbjct: 114 ----GEDLYYSGAELAEMVAQIKRIGNFAVTVCVGERSLADYQLMREAGADR------YL 163

Query: 293 LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352
           L  ++   ++   +    T  E  + +  +R +     + S  +VG PG+T       + 
Sbjct: 164 LKHETADPQLFSQLRPGTTLQERLERLKWLREL--GYQVGSGNMVGLPGQTMATLADDIL 221

Query: 353 LVDKIGYAQAFSFKYSPRLGTP 374
           L+ ++    A    + P   TP
Sbjct: 222 LLKELDVEMAGIGPFIPHHQTP 243


>gi|158523028|ref|YP_001530898.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Desulfococcus oleovorans Hxd3]
 gi|158511854|gb|ABW68821.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Desulfococcus oleovorans Hxd3]
          Length = 393

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/202 (18%), Positives = 65/202 (32%), Gaps = 18/202 (8%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C K C +C               ++    + L+     EI L G  V         G   
Sbjct: 24  CAKKCRYCDFFSLAA------PDRIFSFVKALL----REIQLSGPLVPGMVDTVYIGGGT 73

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL-------MPYLHLPVQSG 298
                   +  +   VR  +  S   +++  +         L       +  +++ +QS 
Sbjct: 74  PSLLSAAQVDVVLSTVRDNFRLSTDAEITMEVNPDSATPAWLAAVRQAGVNRINIGIQSF 133

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
            D  L  + R H+A +    ++  R    D  I +D I   PG+T  D    +D      
Sbjct: 134 DDARLAFLGRIHSARQAEDALEASRRCGFD-NIGADIIYAIPGQTRRDLEKDLDRTLSFS 192

Query: 359 YAQAFSFKYSPRLGTPGSNMLE 380
                 +  +   GTP +  LE
Sbjct: 193 PDHISCYMLTCEPGTPLARALE 214


>gi|121535246|ref|ZP_01667060.1| Radical SAM domain protein [Thermosinus carboxydivorans Nor1]
 gi|121306131|gb|EAX47059.1| Radical SAM domain protein [Thermosinus carboxydivorans Nor1]
          Length = 584

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 56/323 (17%), Positives = 106/323 (32%), Gaps = 44/323 (13%)

Query: 114 GEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTD------YSVEDKFERLSIVD 167
            EEILRR   +  +  P+ Y  + ++    R  +R  D        +  +    +   V 
Sbjct: 181 REEILRRFAQIEGIYVPRFYQPVYDVNGVIREYRRTADVPGRVRRRWVKDLTRYKAQTVI 240

Query: 168 GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITL 227
                +      + +  GC + C FC+  Y       R L+Q+ +   +    G+     
Sbjct: 241 VTPETEFKGMFLVEVGRGCGRHCRFCMAGYCFRRPRMRPLAQISEAVAEAQRYGLKV--- 297

Query: 228 LGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL 287
                    G  +             LS     + L   +     ++D L++A       
Sbjct: 298 ------GLMGAAISDYPEIDRLCQLILSR---NMALSVASLRADSLTDTLVRALAASGH- 347

Query: 288 MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV-RPDIAISSDFIVGFPGETDDD 346
              + L  ++GS R+ + +N+        + ID       P + +    +VG P E D+D
Sbjct: 348 -KTITLAPEAGSKRMRRVINKGIDDQHLYEAIDMATGAGIPHVRLY--IMVGLPYEQDED 404

Query: 347 FRATMDLVDKIGYAQ----------AFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQK 396
             A +++   +                   + P+  TP    L          RL  +  
Sbjct: 405 ADAIVEMAQNVKKHMEGRGSKGKLTLSINPFIPKPFTP-FQWLPMAPVETVEARLSQITA 463

Query: 397 KLREQQVSFNDACVGQIIEVLIE 419
            L+ Q+           IE+L+E
Sbjct: 464 ALKGQKG----------IEILVE 476


>gi|332981030|ref|YP_004462471.1| Radical SAM domain-containing protein [Mahella australiensis 50-1
           BON]
 gi|332698708|gb|AEE95649.1| Radical SAM domain protein [Mahella australiensis 50-1 BON]
          Length = 343

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/202 (16%), Positives = 68/202 (33%), Gaps = 17/202 (8%)

Query: 175 GVTAFLTIQEGCDKFCTFCVVPYT-RGIEISR-SLSQVVDEARKLIDNGVCEITLLGQNV 232
            +   +     C   C +C +    R +E  R    +V+  A +    G   I L     
Sbjct: 51  HLRGLIEFSNYCMNDCMYCGIRRGNRTLERYRIQPDEVIKVAAQAYRLGYRTIVLQSGED 110

Query: 233 NAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLH 292
             + G            ++  + E   +           D    + +A  D         
Sbjct: 111 GYYTGD-------VMCYIIRGIKEAADVAITLSIGERSYDDYKRMKEAGADR------YL 157

Query: 293 LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352
           +  ++ +  + K ++ R       Q +  I+S+     + S F+VG PG+T +D    + 
Sbjct: 158 MRFETSNRELYKKLHPRMDFDNRIQCLKDIKSL--GYELGSGFLVGLPGQTVEDIADDIL 215

Query: 353 LVDKIGYAQAFSFKYSPRLGTP 374
           L+ ++G        + P   TP
Sbjct: 216 LLKELGADMVGIGPFIPHPDTP 237


>gi|320102898|ref|YP_004178489.1| lipoic acid synthetase [Isosphaera pallida ATCC 43644]
 gi|319750180|gb|ADV61940.1| lipoic acid synthetase [Isosphaera pallida ATCC 43644]
          Length = 364

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/195 (17%), Positives = 69/195 (35%), Gaps = 12/195 (6%)

Query: 173 KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNV 232
            R   +F+ + + C + C FC V   RG   + +  +    A      G+  + +     
Sbjct: 106 TRRTASFMILGDTCTRPCGFCAVK--RGRPDAVAQDEPQRLAEACARLGLQYVVITSVT- 162

Query: 233 NAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLH 292
              R    DG    F   + ++ E  G      T     D++   +      +V    L 
Sbjct: 163 ---RDDLPDGGASHFKRCVEAVRERTGATVEVLTPDFNGDLTAVDVVLEASPEVFNHNLE 219

Query: 293 LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352
                   R+ + + R+       +++   +  RPD+   S  ++G  GET ++   T+ 
Sbjct: 220 TVA-----RLQRWVRRKSQYTISLKVLAHAKRARPDLLTKSGLMLGL-GETTEEILETLA 273

Query: 353 LVDKIGYAQAFSFKY 367
            +  IG       +Y
Sbjct: 274 DLRSIGCDLLTLGQY 288


>gi|271968508|ref|YP_003342704.1| Fe-S oxidoreductase [Streptosporangium roseum DSM 43021]
 gi|270511683|gb|ACZ89961.1| Fe-S oxidoreductase [Streptosporangium roseum DSM 43021]
          Length = 636

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 61/321 (19%), Positives = 96/321 (29%), Gaps = 59/321 (18%)

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
               V+D D     K   + + +  + R       + I  GC + C FC           
Sbjct: 238 HKHTVMDLDEWPYPKKPLVPLAETVHERFS-----VEIFRGCTRGCRFCQAGMITRPVRE 292

Query: 205 RSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           RS++ + D     +   G  E+ LL     +       GE        Y          L
Sbjct: 293 RSITTIGDMVEAGVKASGFNEVGLLS---LSSADHSEIGEVAKGLADRYE----GTNTSL 345

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR-- 321
              ++     +  L             L    + GS+R+ K +N+  T  +  + +    
Sbjct: 346 SLPSTRVDAFNIDLANEFSRNGR-RSGLTFAPEGGSERMRKVINKMVTEEDLIRTVTTAY 404

Query: 322 ---IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA------------QAFSFK 366
               R V+        F+ G P E D D     DL  K+  A                  
Sbjct: 405 TQGWRQVK------LYFMCGLPTEEDADVLGIADLAKKVIKAGREATGSRDVRCTVSIGG 458

Query: 367 YSPRLGTPGSNMLEQVDENVKAERLLCLQKKLR---------------------EQQVSF 405
           + P+  TP      Q D      RL  L+  LR                     E  +S 
Sbjct: 459 FVPKPHTP-FQWAAQADHETVDRRLKALKDALRGDREYGRAIGLRYHDGKPSIVEGMLSR 517

Query: 406 NDACVGQIIEVLIEKHGKEKG 426
            D  VG++I  + E  G+  G
Sbjct: 518 GDRRVGKVIRAVWEGGGRFDG 538


>gi|209522788|ref|ZP_03271346.1| Radical SAM domain protein [Arthrospira maxima CS-328]
 gi|209496837|gb|EDZ97134.1| Radical SAM domain protein [Arthrospira maxima CS-328]
          Length = 524

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 53/325 (16%), Positives = 106/325 (32%), Gaps = 34/325 (10%)

Query: 58  SMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEI 117
             + A+L++L+   +++        FL +I+  K          +V V G    A   E 
Sbjct: 62  EWEWAELVILSAMIVQKN------DFLDQIQEAKKRGK------IVAVGGPFPTALPHEA 109

Query: 118 LRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFE--RLSIVDGGYNRKRG 175
            +     + +V  +    LP  +     G+       +  +K +     I       K+ 
Sbjct: 110 EKM--GADFLVLDEGEITLPMFVAALERGETSGILRAANGEKPDVTTTPIPRFDLLEKQA 167

Query: 176 VTAF-LTIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVCEITLLGQNVN 233
                L    GC   C FC +    G +  +++  Q++ E  +L++ G  +   L  +  
Sbjct: 168 YDMMALQFSRGCPFQCEFCDIIVLYGRKPRTKAPEQLLAELDRLLELGFTQTIFLVDD-- 225

Query: 234 AWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM----SDCLIKAHGDLDVLMP 289
                   G K     LL +L E        +       +       L+    + +    
Sbjct: 226 -----NFIGNKRNVKLLLPALKEWMEKNNYPFRMMTEASVDLAQDQELMNMMVEANFYA- 279

Query: 290 YLHLPVQSGSDRILKSMNRR-HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFR 348
            + L +++  +  L    +  +T       +D I   R  + + + FI+GF GE      
Sbjct: 280 -VFLGIETPDEGSLALTKKFQNTRNSLVDAVDNIT--RSGLRVMAGFIIGFDGEKSGAGD 336

Query: 349 ATMDLVDKIGYAQAFSFKYSPRLGT 373
             +  V+      A          T
Sbjct: 337 RIIQFVETTAIPVAMFSMLQVLPNT 361


>gi|113866154|ref|YP_724643.1| lipoyl synthase [Ralstonia eutropha H16]
 gi|122947213|sp|Q0KFE6|LIPA_RALEH RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|113524930|emb|CAJ91275.1| lipoate synthase [Ralstonia eutropha H16]
          Length = 331

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/208 (16%), Positives = 71/208 (34%), Gaps = 12/208 (5%)

Query: 161 ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN 220
           E  S  + G    +G   F+ + + C + C FC V + R   +   +++  + AR +   
Sbjct: 79  EEASCPNIGECFGKGTATFMIMGDKCTRRCPFCDVGHGRPDPL--DVNEPGNLARTIAQL 136

Query: 221 GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKA 280
            +  + +   +    R    DG    + D +    E+    R+       R   D  +  
Sbjct: 137 KLNYVVITSVD----RDDLRDGGAQHYVDCISQTRELSPATRIEVLVPDFRGRLDKALDI 192

Query: 281 H-GDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGF 339
                  +M +    V     R+ K            +++   +   P++   S  +VG 
Sbjct: 193 LQACPPDVMNHNMETV----PRLYKQARPGADYEHSLKLLQEFKRRNPNVPTKSGLMVGL 248

Query: 340 PGETDDDFRATMDLVDKIGYAQAFSFKY 367
            GETD++    M  +           +Y
Sbjct: 249 -GETDEEILEVMRDMRAHDIDMLTIGQY 275


>gi|312968650|ref|ZP_07782859.1| radical SAM superfamily protein [Escherichia coli 2362-75]
 gi|312286868|gb|EFR14779.1| radical SAM superfamily protein [Escherichia coli 2362-75]
          Length = 739

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 48/297 (16%), Positives = 98/297 (32%), Gaps = 58/297 (19%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDN--GVCEIT--LLGQNVNA 234
           + I  GC   C+FC +    G  I SRS   +++E   + D   G   +   L G   N 
Sbjct: 380 VNIMRGCFGGCSFCSITEHEGRIIQSRSEDSIINEIEAIRDTVPGFTGVISDLGGPTANM 439

Query: 235 WR----------------------GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
           +                          +D       +L     ++KG+ ++   +    D
Sbjct: 440 YMLRCKSPRAEQTCRRLSCVYPDICPHMDTNHEPTINLYRRARDLKGIKKILIASGVRYD 499

Query: 273 MSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRRH--TAYEYRQIIDRI-RSVRP 327
           ++    +   +L    +  YL +  +   +  L  M +    +   ++++ D   +    
Sbjct: 500 IAVEDPRYIKELATHHVGGYLKIAPEHTEEGPLSKMMKPGMGSYDRFKELFDTYSKQAGK 559

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGY--AQAFSFKYSPRLGT---------PGS 376
           +  +   FI   PG  D+D       + K  +   Q  +F  SP   +         P +
Sbjct: 560 EQYLIPYFISAHPGTRDEDMVNLALWLKKHRFRLDQVQNFYPSPLANSTTMYYTGKNPLA 619

Query: 377 NMLEQ-----VDENVKAERL-LCLQK--------KLREQQVSF-NDACVGQIIEVLI 418
            +  +     V +  K  RL   L +         +R+   +      +G   + L+
Sbjct: 620 KIGYKSEDVFVPKGDKQRRLHKALLRYHDPANWPLIRQALEAMGKKHLIGSRRDCLV 676


>gi|289661775|ref|ZP_06483356.1| Mg-protoporphyrin IX monomethyl ester oxidative cyclase
           [Xanthomonas campestris pv. vasculorum NCPPB702]
          Length = 517

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 42/235 (17%), Positives = 72/235 (30%), Gaps = 19/235 (8%)

Query: 155 SVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEA 214
              D  +          R    +  +    GC   C +C  P        R   +V  E 
Sbjct: 208 PAWDLVDMPRYQRFWQQRHGYFSLNMAASRGCPFRCNWCAKPIWGNHYKRRGAEEVAAEM 267

Query: 215 RKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMS 274
             L  +   +   +  ++  +    ++            LS+  G   + +T     D++
Sbjct: 268 IHLKRSFQPDHIWMADDIFGFHIDWVET-------FAQQLSDADGA--IPFTIQTRADLA 318

Query: 275 DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSD 334
              + A            +  +SGS RIL  M +     E     +R+ +    I +   
Sbjct: 319 SKRMAAALARAGCAEAW-IGAESGSQRILDKMTKGMQVGEVIAARERLGTQ--GIRVGFF 375

Query: 335 FIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAE 389
             +G+ GE  DD  AT  LV +            P  GT          E VK +
Sbjct: 376 IQLGYLGEELDDILATRALVTQANPDIIGVSVSYPLPGTKFY-------EEVKNQ 423


>gi|306755838|sp|C0SDG9|LIPA_PARBP RecName: Full=Lipoyl synthase, mitochondrial; AltName: Full=Lipoate
           synthase; Short=LS; Short=Lip-syn; AltName: Full=Lipoic
           acid synthase; Flags: Precursor
 gi|225685229|gb|EEH23513.1| lipoyl synthase [Paracoccidioides brasiliensis Pb03]
          Length = 434

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 45/262 (17%), Positives = 94/262 (35%), Gaps = 24/262 (9%)

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQ-EGCDKFCTFCVVPYTRG 200
           R +   R ++     E+          G + K   TA + +  + C + C FC V  +R 
Sbjct: 130 RIKSDLRGLNLHTVCEEARCPNISDCWGGSSKSAATATIMLMGDTCTRGCRFCSVKTSRT 189

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKG 259
                   +  + A  L   G+  + +   +    R    DG     ++ +  +  +  G
Sbjct: 190 PP-PLDPHEPENTAEALSRWGLGYVVMTSVD----RDDLADGGARHVAETVRKVKQKAPG 244

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           ++    T  +  D+    + A   LDV    +   V++ +  +     RR T  +  +++
Sbjct: 245 ILLECLTGDYAGDLEMVALVATSGLDVFAHNVET-VEALTPFVRD---RRATFQQSLRVL 300

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
              +  RP++   +  ++G  GET+     T+  +  +        +Y  R     +   
Sbjct: 301 KAAKEARPELITKTSIMLGL-GETETQLWETLRALRTVDVDVVTFGQYM-RP----TKRH 354

Query: 380 EQVDENVK-------AERLLCL 394
             V E V+        ER L +
Sbjct: 355 MAVHEYVRPGVFDLWKERALEM 376


>gi|229917129|ref|YP_002885775.1| lipoyl synthase [Exiguobacterium sp. AT1b]
 gi|229468558|gb|ACQ70330.1| lipoic acid synthetase [Exiguobacterium sp. AT1b]
          Length = 298

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/214 (14%), Positives = 72/214 (33%), Gaps = 13/214 (6%)

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           ++V ++ +  +I +    R+     F+ +   C + C FC V   +  E+     +    
Sbjct: 36  HTVCEEAKCPNIHECWAVRR--TATFMILGSICTRACRFCAVTTGKPNEL--DWEEPKRV 91

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
           A  +    +  + +        R    D     F++ + ++  +     +    S     
Sbjct: 92  AESVRLMNLKHVVITAV----ARDDLNDYGATVFAETVRAVRAMNPETSIEVLPSDMMGD 147

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
              L         +M +    V+  +      +  + T     + + R + + PDI   S
Sbjct: 148 FSALQTLIDAGPDIMNHNLETVRRLTP----RVRAKATYDRTLEFLKRSKELNPDIPTKS 203

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
             +VG  GET ++    MD +           +Y
Sbjct: 204 SIMVGL-GETKEELIEAMDDLRAHNVDILTLGQY 236


>gi|121587685|ref|ZP_01677447.1| lipoic acid synthetase [Vibrio cholerae 2740-80]
 gi|121728058|ref|ZP_01681096.1| lipoic acid synthetase [Vibrio cholerae V52]
 gi|147673404|ref|YP_001216418.1| lipoyl synthase [Vibrio cholerae O395]
 gi|153213828|ref|ZP_01949034.1| lipoic acid synthetase [Vibrio cholerae 1587]
 gi|153817221|ref|ZP_01969888.1| lipoic acid synthetase [Vibrio cholerae NCTC 8457]
 gi|153826139|ref|ZP_01978806.1| lipoic acid synthetase [Vibrio cholerae MZO-2]
 gi|153828938|ref|ZP_01981605.1| lipoic acid synthetase [Vibrio cholerae 623-39]
 gi|227081117|ref|YP_002809668.1| lipoic acid synthetase [Vibrio cholerae M66-2]
 gi|229505455|ref|ZP_04394965.1| lipoate synthase [Vibrio cholerae BX 330286]
 gi|229512962|ref|ZP_04402428.1| lipoate synthase [Vibrio cholerae TMA 21]
 gi|229523263|ref|ZP_04412670.1| lipoate synthase [Vibrio cholerae TM 11079-80]
 gi|229525555|ref|ZP_04414960.1| lipoate synthase [Vibrio cholerae bv. albensis VL426]
 gi|229529959|ref|ZP_04419349.1| lipoate synthase [Vibrio cholerae 12129(1)]
 gi|254285615|ref|ZP_04960579.1| lipoic acid synthetase [Vibrio cholerae AM-19226]
 gi|298498939|ref|ZP_07008746.1| lipoyl synthase [Vibrio cholerae MAK 757]
 gi|172047422|sp|A5F2Y0|LIPA_VIBC3 RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|254809204|sp|C3LTJ1|LIPA_VIBCM RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|121548057|gb|EAX58133.1| lipoic acid synthetase [Vibrio cholerae 2740-80]
 gi|121629687|gb|EAX62107.1| lipoic acid synthetase [Vibrio cholerae V52]
 gi|124115662|gb|EAY34482.1| lipoic acid synthetase [Vibrio cholerae 1587]
 gi|126512255|gb|EAZ74849.1| lipoic acid synthetase [Vibrio cholerae NCTC 8457]
 gi|146315287|gb|ABQ19826.1| lipoic acid synthetase [Vibrio cholerae O395]
 gi|148875554|gb|EDL73689.1| lipoic acid synthetase [Vibrio cholerae 623-39]
 gi|149740162|gb|EDM54321.1| lipoic acid synthetase [Vibrio cholerae MZO-2]
 gi|150424477|gb|EDN16414.1| lipoic acid synthetase [Vibrio cholerae AM-19226]
 gi|227009005|gb|ACP05217.1| lipoic acid synthetase [Vibrio cholerae M66-2]
 gi|227012760|gb|ACP08970.1| lipoic acid synthetase [Vibrio cholerae O395]
 gi|229333733|gb|EEN99219.1| lipoate synthase [Vibrio cholerae 12129(1)]
 gi|229339136|gb|EEO04153.1| lipoate synthase [Vibrio cholerae bv. albensis VL426]
 gi|229339626|gb|EEO04641.1| lipoate synthase [Vibrio cholerae TM 11079-80]
 gi|229349855|gb|EEO14809.1| lipoate synthase [Vibrio cholerae TMA 21]
 gi|229357678|gb|EEO22595.1| lipoate synthase [Vibrio cholerae BX 330286]
 gi|297543272|gb|EFH79322.1| lipoyl synthase [Vibrio cholerae MAK 757]
 gi|327483670|gb|AEA78077.1| Lipoate synthase [Vibrio cholerae LMA3894-4]
          Length = 321

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/211 (14%), Positives = 70/211 (33%), Gaps = 12/211 (5%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V    G   +    +    A+ + D  +  + +   +    R    DG   
Sbjct: 94  CTRRCPFCDV--AHGRPNAPEAEEPKKLAQTIHDMKLKYVVITSVD----RDDLRDGGAQ 147

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
            F+D    +  +   +++       R   +  ++A  D     P +       + R+ + 
Sbjct: 148 HFADCNREIRALNPHIKIETLVPDFRGRMEVALEALKDNP---PDVFNHNLETAPRLYRK 204

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           +          +++ + +   P +   S  ++G  GET ++    +  +   G       
Sbjct: 205 VRPGANYKWSLELLRQFKEQHPHVPTKSGLMMGL-GETKEEIVEVLKDLRAHGVTMLTLG 263

Query: 366 KYSP--RLGTPGSNMLEQVDENVKAERLLCL 394
           +Y    R   P    +   + +   E  L L
Sbjct: 264 QYLAPSRHHLPVERYVPPAEFDELKEIALEL 294


>gi|297733622|emb|CBI14869.3| unnamed protein product [Vitis vinifera]
          Length = 453

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/228 (16%), Positives = 76/228 (33%), Gaps = 23/228 (10%)

Query: 162 RLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR-GIEISRSLSQ---VVDEARKL 217
                    +    V+A++ +   C K C +C  P    G   +        +++  + +
Sbjct: 43  HNPSTTTPPHNLPPVSAYIHLPF-CRKRCHYCDFPIVALGSSFTPPPEDDPRILNYTQLI 101

Query: 218 IDNGVCEITLLGQN---VNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMS 274
                 EI                   G   +       +S+I   +RL++      +MS
Sbjct: 102 ----CREIEATKPECYPTPPLETVFFGGGTPSLV-PPRLVSDIVEALRLKFGLCLDAEMS 156

Query: 275 DCLIKAHGDLDVL-------MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
             +     D + L       +  + L VQ+  + +L+   R H   E  + I+ ++S   
Sbjct: 157 MEMDPGTFDAEKLKGLMELGVNRVSLGVQAFQEEMLRGCGRAHGVKEIYEAIETVKSC-- 214

Query: 328 DIAISS-DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
            +   S D I   P +T + +  ++ LV +        +      GT 
Sbjct: 215 GVENWSVDLISSLPHQTPEMWEESLQLVIEAQPTHVSVYDLQVEQGTK 262


>gi|225457431|ref|XP_002262672.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 473

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/228 (16%), Positives = 76/228 (33%), Gaps = 23/228 (10%)

Query: 162 RLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR-GIEISRSLSQ---VVDEARKL 217
                    +    V+A++ +   C K C +C  P    G   +        +++  + +
Sbjct: 43  HNPSTTTPPHNLPPVSAYIHLPF-CRKRCHYCDFPIVALGSSFTPPPEDDPRILNYTQLI 101

Query: 218 IDNGVCEITLLGQN---VNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMS 274
                 EI                   G   +       +S+I   +RL++      +MS
Sbjct: 102 ----CREIEATKPECYPTPPLETVFFGGGTPSLV-PPRLVSDIVEALRLKFGLCLDAEMS 156

Query: 275 DCLIKAHGDLDVL-------MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
             +     D + L       +  + L VQ+  + +L+   R H   E  + I+ ++S   
Sbjct: 157 MEMDPGTFDAEKLKGLMELGVNRVSLGVQAFQEEMLRGCGRAHGVKEIYEAIETVKSC-- 214

Query: 328 DIAISS-DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
            +   S D I   P +T + +  ++ LV +        +      GT 
Sbjct: 215 GVENWSVDLISSLPHQTPEMWEESLQLVIEAQPTHVSVYDLQVEQGTK 262


>gi|329904747|ref|ZP_08273922.1| Lipoate synthase [Oxalobacteraceae bacterium IMCC9480]
 gi|327547850|gb|EGF32610.1| Lipoate synthase [Oxalobacteraceae bacterium IMCC9480]
          Length = 328

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 36/208 (17%), Positives = 66/208 (31%), Gaps = 12/208 (5%)

Query: 161 ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN 220
           E  S  + G    +G   F+ + + C + C FC V   R   +     +    AR +   
Sbjct: 76  EEASCPNIGECWSKGTATFMIMGDKCTRRCRFCNVSTGRPDAL--DADEPARLARTIALM 133

Query: 221 GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKA 280
            +  + L   +    R    DG    F + +  +       R+   T       +  +  
Sbjct: 134 KLSYVVLTSVD----RDDLPDGGASHFVECIRQIRAAAPATRIEILTPDFGGRLELALDI 189

Query: 281 HGDLDVLMPYLHLPVQSGSDRIL-KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGF 339
            G     +    L     +   L K             ++   +++ P I   S  +VG 
Sbjct: 190 LGTAPPDV----LNHNIETVPRLYKEARPGADFQNSLNLLKNFKAMHPAIPTKSGLMVGL 245

Query: 340 PGETDDDFRATMDLVDKIGYAQAFSFKY 367
            GETDD+    +  +   G       +Y
Sbjct: 246 -GETDDEILEVLRELRAHGVDMLTIGQY 272


>gi|215488339|ref|YP_002330770.1| hypothetical protein E2348C_3301 [Escherichia coli O127:H6 str.
           E2348/69]
 gi|215266411|emb|CAS10849.1| predicted protein [Escherichia coli O127:H6 str. E2348/69]
          Length = 739

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 48/297 (16%), Positives = 98/297 (32%), Gaps = 58/297 (19%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDN--GVCEIT--LLGQNVNA 234
           + I  GC   C+FC +    G  I SRS   +++E   + D   G   +   L G   N 
Sbjct: 380 VNIMRGCFGGCSFCSITEHEGRIIQSRSEDSIINEIEAIRDTVPGFTGVISDLGGPTANM 439

Query: 235 WR----------------------GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
           +                          +D       +L     ++KG+ ++   +    D
Sbjct: 440 YMLRCKSPRAEQTCRRLSCVYPDICPHMDTNHEPTINLYRRARDLKGIKKILIASGVRYD 499

Query: 273 MSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRRH--TAYEYRQIIDRI-RSVRP 327
           ++    +   +L    +  YL +  +   +  L  M +    +   ++++ D   +    
Sbjct: 500 IAVEDPRYIKELATHHVGGYLKIAPEHTEEGPLSKMMKPGMGSYDRFKELFDTYSKQAGK 559

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGY--AQAFSFKYSPRLGT---------PGS 376
           +  +   FI   PG  D+D       + K  +   Q  +F  SP   +         P +
Sbjct: 560 EQYLIPYFISAHPGTRDEDMVNLALWLKKHRFRLDQVQNFYPSPLANSTTMYYTGKNPLA 619

Query: 377 NMLEQ-----VDENVKAERL-LCLQK--------KLREQQVSF-NDACVGQIIEVLI 418
            +  +     V +  K  RL   L +         +R+   +      +G   + L+
Sbjct: 620 KIGYKSEDVFVPKGDKQRRLHKALLRYHDPANWPLIRQALEAMGKKHLIGSRRDCLV 676


>gi|20807545|ref|NP_622716.1| biotin synthase [Thermoanaerobacter tengcongensis MB4]
 gi|20516079|gb|AAM24320.1| Biotin synthase and related enzymes [Thermoanaerobacter
           tengcongensis MB4]
          Length = 351

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/201 (11%), Positives = 67/201 (33%), Gaps = 17/201 (8%)

Query: 176 VTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL--SQVVDEARKLIDNGVCEITLLGQNVN 233
           +   +     C   C +C +  +        +   ++V+ A++    G   + L      
Sbjct: 53  LRGLIEFSSYCKNDCFYCGLRRSNQNAQRYRMQEDEIVEVAKRAYQMGYRTVVLQS---- 108

Query: 234 AWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHL 293
              G+ +   K     ++  +  +  +           D       A  D         +
Sbjct: 109 ---GEDMYYTKDRLCSIIKKMKRVVDVAITLSIGERSYDEYKVFKDAGADR------FLM 159

Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
             ++ ++++ +  +   +     + +  ++ +     + + F++G PG+T DD    + L
Sbjct: 160 RFETSNEKLYRKYHPGMSFENRIECLKWLKKL--GYELGTGFLIGLPGQTLDDLAQDIIL 217

Query: 354 VDKIGYAQAFSFKYSPRLGTP 374
           V ++         + P   TP
Sbjct: 218 VKELDADMIGIGPFIPHPQTP 238


>gi|54023388|ref|YP_117630.1| coproporphyrinogen III oxidase [Nocardia farcinica IFM 10152]
 gi|54014896|dbj|BAD56266.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Nocardia farcinica IFM 10152]
          Length = 424

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 48/237 (20%), Positives = 83/237 (35%), Gaps = 18/237 (7%)

Query: 186 CDKFCTFCVV-PYTRGIE-ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
           C   C +C    YT G    S S    +   R  +     +   L   V       + G 
Sbjct: 57  CATRCGYCDFNTYTAGELGTSASPQSWLAALRGELATAAAQFARLPSPVPPVATVFVGGG 116

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY--------LHLPV 295
             +       L+E+   VR  +T +   +++                        + L +
Sbjct: 117 TPSL-LGGEGLAEVLDAVRANFTVAADAEITTE-SNPESTSPRFFERLREAGYTRISLGM 174

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
           QS +  +L  ++R HT           R+   +  ++ D I G PGETD D  AT+D V 
Sbjct: 175 QSAAQHVLAVLDRTHTPGRAVAAAREARAAGFE-HVNLDLIYGTPGETDADLDATLDAVL 233

Query: 356 KIGYAQAFSFKYSPRLGTPGSNM-----LEQVDENVKAERLLCLQKKLREQQVSFND 407
             G     ++      GT  +       L   DE+V A R   + ++L    +++ +
Sbjct: 234 AAGVDHVSAYSLIVEDGTALARRVRRGELPAPDEDVLAARYERIDRRLTAAGLAWYE 290


>gi|323499949|ref|ZP_08104907.1| lipoyl synthase [Vibrio sinaloensis DSM 21326]
 gi|323314966|gb|EGA68019.1| lipoyl synthase [Vibrio sinaloensis DSM 21326]
          Length = 321

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/182 (15%), Positives = 62/182 (34%), Gaps = 10/182 (5%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V    G  ++    +    A+ + D  +  + +   +    R    DG   
Sbjct: 94  CTRRCPFCDV--AHGRPLTPEADEPKKLAKTIQDMKLKYVVITSVD----RDDLRDGGAQ 147

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
            F+D    +  +   +++       R   D  ++   D     P +       + R+ + 
Sbjct: 148 HFADCNREIRALNPHIKIETLVPDFRGRMDVALELLKDNP---PDVFNHNLETAPRLYRK 204

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
                       ++ + +   PDI   S  ++G  GET ++    +  + + G       
Sbjct: 205 ARPGANYKWSLDLLKKFKDQHPDIPTKSGIMMGL-GETKEEIIQVLKDLREHGVTMLTLG 263

Query: 366 KY 367
           +Y
Sbjct: 264 QY 265


>gi|307718025|ref|YP_003873557.1| lipoyl synthase [Spirochaeta thermophila DSM 6192]
 gi|306531750|gb|ADN01284.1| lipoyl synthase [Spirochaeta thermophila DSM 6192]
          Length = 294

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 41/206 (19%), Positives = 74/206 (35%), Gaps = 10/206 (4%)

Query: 162 RLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNG 221
           R   +   + R R  T FL + E C + C FC V    G        +    A+ +   G
Sbjct: 40  RCPNLHECWGRYRTAT-FLLLGEVCTRRCRFCAV--GHGRPCPPDPEEPARVAQVVARLG 96

Query: 222 VCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAH 281
           +  + L        R    DG     +  +  + +    VR+   TS  R     L    
Sbjct: 97  IRHVVLTMVT----RDDLPDGGAGHVAAAVREVRKASPGVRVEILTSDFRGDLAALETVL 152

Query: 282 GDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPG 341
                +M +    V+  + R+    +   +    R+   R+R+      + S F+VG  G
Sbjct: 153 ESRPEIMSHNVETVRRLTPRVRSGASYERSLAFLREAGLRVRAY--GGFLKSSFMVGL-G 209

Query: 342 ETDDDFRATMDLVDKIGYAQAFSFKY 367
           ET+++ + T+  +   G       +Y
Sbjct: 210 ETEEEVKETLRDLRAAGVQMVNIGQY 235


>gi|194367214|ref|YP_002029824.1| lipoyl synthase [Stenotrophomonas maltophilia R551-3]
 gi|238693434|sp|B4SJ16|LIPA_STRM5 RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|194350018|gb|ACF53141.1| lipoic acid synthetase [Stenotrophomonas maltophilia R551-3]
          Length = 336

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/212 (16%), Positives = 72/212 (33%), Gaps = 18/212 (8%)

Query: 161 ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS--QVVDEARKLI 218
           E  S  +       G   F+ + E C + C+FC V + R           +     + + 
Sbjct: 82  EEASCPNIHECFGHGTATFMILGEVCTRRCSFCDVAHGRPK----PPDANEPASLGQTVA 137

Query: 219 DNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD---MSD 275
           D G+  + +   +    R    DG    F D + ++ E     R+   T   R    M  
Sbjct: 138 DMGLKYVVVTSVD----RDDLRDGGAQHFVDCISAIREKSPGTRIEVLTPDFRGKGRMER 193

Query: 276 CLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDF 335
            L     +   +  +    +++  D   +++           ++   ++  P++   S  
Sbjct: 194 ALEILAQNPPDVFNH---NIETVPDLY-RNVRPGADYQWSLNLLKNFKAQHPEVPTKSGI 249

Query: 336 IVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           ++G  GE  +  +ATM  +           +Y
Sbjct: 250 MLGL-GEEFEQIKATMRDLRAHDVDMITIGQY 280


>gi|26249580|ref|NP_755620.1| hypothetical protein c3749 [Escherichia coli CFT073]
 gi|47606296|sp|Q8FDK9|YGIQ_ECOL6 RecName: Full=UPF0313 protein ygiQ
 gi|26109988|gb|AAN82193.1|AE016766_281 Conserved hypothetical protein [Escherichia coli CFT073]
          Length = 739

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 48/297 (16%), Positives = 98/297 (32%), Gaps = 58/297 (19%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDN--GVCEIT--LLGQNVNA 234
           + I  GC   C+FC +    G  I SRS   +++E   + D   G   +   L G   N 
Sbjct: 380 VNIMRGCFGGCSFCSITEHEGRIIQSRSEDSIINEIEAIRDTVPGFTGVISDLGGPTANM 439

Query: 235 WR----------------------GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
           +                          +D       +L     ++KG+ ++   +    D
Sbjct: 440 YMLRCKSPRAEQTCRRLSCVYPDICPHMDTNHEPTINLYRRARDLKGIKKILIASGVRYD 499

Query: 273 MSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRRH--TAYEYRQIIDRI-RSVRP 327
           ++    +   +L    +  YL +  +   +  L  M +    +   ++++ D   +    
Sbjct: 500 IAVEDPRYIKELATHHVGGYLKIAPEHTEEGPLSKMMKPGMGSYDRFKELFDTYSKQAGK 559

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGY--AQAFSFKYSPRLGT---------PGS 376
           +  +   FI   PG  D+D       + K  +   Q  +F  SP   +         P +
Sbjct: 560 EQYLIPYFISAHPGTRDEDMVNLALWLKKHRFRLDQVQNFYPSPLANSTTMYYTGKNPLA 619

Query: 377 NMLEQ-----VDENVKAERL-LCLQK--------KLREQQVSF-NDACVGQIIEVLI 418
            +  +     V +  K  RL   L +         +R+   +      +G   + L+
Sbjct: 620 KIGYKSEDVFVPKGDKQRRLHKALLRYHDPANWPLIRQALEAMGKKHLIGSRRDCLV 676


>gi|167041484|gb|ABZ06234.1| putative Radical SAM superfamily protein [uncultured marine
           microorganism HF4000_007I05]
          Length = 505

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 42/233 (18%), Positives = 87/233 (37%), Gaps = 26/233 (11%)

Query: 159 KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV--PYTRGIEISRSLSQVVDEARK 216
           K++  +    G    R   A L    GC   CTFC +  P+ +      +   ++++ + 
Sbjct: 200 KYKAHNWHTFGKLETRNRYASLQTSLGCPFKCTFCCINAPFEKNTIRFWTPKHIINQIKI 259

Query: 217 LIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDC 276
           +++           + N +  K  D     F      +SEI   +      S     +  
Sbjct: 260 IVE-----------DYNIFNIKIPD---EMFVLNPKQVSEICDEIINSGYGSKLNFWAYA 305

Query: 277 LIKAHGDLDVL-------MPYLHLPVQSGSDRILK-SMNRRHTAYEYRQIIDRIRSVRPD 328
            I    D ++L         +L L ++S S  +    +  R   Y+   I+ ++R +   
Sbjct: 306 RIDTLEDNEMLKKMIKSGFKWLALGIESSSKHVRDGVVKGRFNNYDIEDIVKKVRDM--G 363

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
             + +++I G P + +D  + T+DL  +I    A  +      G+    M ++
Sbjct: 364 FFVGANYIFGLPDDNNDSMKETLDLSLRINSEWANFYSGMAYPGSQLYPMAKK 416


>gi|37520378|ref|NP_923755.1| hypothetical protein gll0809 [Gloeobacter violaceus PCC 7421]
 gi|35211371|dbj|BAC88750.1| gll0809 [Gloeobacter violaceus PCC 7421]
          Length = 532

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 48/329 (14%), Positives = 95/329 (28%), Gaps = 36/329 (10%)

Query: 54  ERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAE 113
           E        DL++++   ++    E   + + +   L       G     V    +A   
Sbjct: 58  EIEEDWAWCDLVIISAMIVQ---KEDFRTLIQKGVALGKKVAVGGPFPTSVPDFALAAGA 114

Query: 114 GEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRK 173
              IL                 +P  LE    G+       + +    R  +        
Sbjct: 115 HYLILDEGEC-----------TVPLFLEALERGEERGVFRSADKPDVTRTPVPRFDLLDM 163

Query: 174 RGVTAF-LTIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVCEITLLGQN 231
           R   A  +    GC   C FC +    G +  ++   Q++ E   L   G      +  +
Sbjct: 164 RAYLAMTVQFSRGCPFQCEFCDIINLYGRKPRTKHPEQMLAELEVLYRMGWNRYVFVVDD 223

Query: 232 VNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD------MSDCLIKAHGDLD 285
                     G        L +L  I  +   RY      +          L++    + 
Sbjct: 224 -------NFIGNARNAKIFLRAL--IPWMEARRYPFILLTEASLNLAEDPELVELM--VK 272

Query: 286 VLMPYLHLPVQSGS-DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETD 344
                + + +++   D +L+    ++T     +  +++      + I S FI+GF  E  
Sbjct: 273 AGFTTVFMGIETPDTDSLLEVHKLQNTRRSLAESCEKVTRA--GLQIMSGFIMGFDHERP 330

Query: 345 DDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
                    ++  G  QA          T
Sbjct: 331 GAGERIRAFIELTGIPQAQFSLLQALQNT 359


>gi|34498552|ref|NP_902767.1| lipoyl synthase [Chromobacterium violaceum ATCC 12472]
 gi|47117163|sp|Q7NTF9|LIPA_CHRVO RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|34104407|gb|AAQ60765.1| lipoic acid synthetase [Chromobacterium violaceum ATCC 12472]
          Length = 315

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/250 (16%), Positives = 84/250 (33%), Gaps = 22/250 (8%)

Query: 127 VVGPQTYYRLPELL-ERARFGKRVVDT-----DYSVEDKFERLSIVDGGYNRKRGVTAFL 180
           +V      + PE +  +   G+R  +      +  +    E  +  + G    +G   F+
Sbjct: 24  IVPLDEKLKKPEWIRAKLPNGQRFHEIKQILREQKLHTVCEEATCPNIGECFSKGTATFM 83

Query: 181 TIQEGCDKFCTFCVVPYTRGIEISRSLSQV--VDEARKLIDNGVCEITLLGQNVNAWRGK 238
            + + C + C FC V + R       L +      A  +    +  + +   +    R  
Sbjct: 84  IMGDICTRRCPFCDVGHGRPN----PLDENEPRHLAESVAAMRLKYVVVTSVD----RDD 135

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV-LMPYLHLPVQS 297
             DG    F+D + ++ E+    ++       R   D  +         +M +    V  
Sbjct: 136 LRDGGAQHFADCINAVREMSPATQIETLVPDFRGRLDIAVDILTQTPPDVMNHNLETV-- 193

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
              R+ K            Q++   ++  P++   S  +VG  GETD++    M  +   
Sbjct: 194 --PRLYKQARPGADYAHSLQLLKDYKAKNPNVRTKSGLMVGL-GETDEEILEVMRDLRAH 250

Query: 358 GYAQAFSFKY 367
                   +Y
Sbjct: 251 NVDMLTIGQY 260


>gi|238505430|ref|XP_002383943.1| lipoic acid synthetase precursor [Aspergillus flavus NRRL3357]
 gi|306755818|sp|B8NUL8|LIPA_ASPFN RecName: Full=Lipoyl synthase, mitochondrial; AltName: Full=Lipoate
           synthase; Short=LS; Short=Lip-syn; AltName: Full=Lipoic
           acid synthase; Flags: Precursor
 gi|220690057|gb|EED46407.1| lipoic acid synthetase precursor [Aspergillus flavus NRRL3357]
          Length = 415

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/234 (15%), Positives = 85/234 (36%), Gaps = 20/234 (8%)

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQ-EGCDKFCTFCVVPYTR 199
           +R +   R ++     E+          G + K   TA + +  + C + C FC V   R
Sbjct: 117 QRLKKDLRGLNLHTVCEEARCPNISDCWGGSDKSAATATIMLMGDTCTRGCRFCSVKTNR 176

Query: 200 GIEISRSL----SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
                R       +  + A  +    +  + L   +    R    DG    F++ +  + 
Sbjct: 177 -----RPPPLDPHEPENTAEAISRWSLGYVVLTSVD----RDDLADGGARHFAETVIKIK 227

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV-LMPYLHLPVQSGSDRILKSMNRRHTAYE 314
           + K  + +   T         ++K      + +  +    V++ +  +     RR T  +
Sbjct: 228 QKKPSMLVECLTGDYLG-DLEMVKLVARSGLDVYAHNVETVEALTPFVRD---RRATFQQ 283

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
             ++++  +  RPD+   +  ++GF GET++     +  +  +G       +Y 
Sbjct: 284 SLRVLEAAKQARPDLITKTSLMLGF-GETEEQLWDALRQLRSVGVDVVTFGQYM 336


>gi|169780424|ref|XP_001824676.1| lipoyl synthase [Aspergillus oryzae RIB40]
 gi|121799308|sp|Q2U4H2|LIPA_ASPOR RecName: Full=Lipoyl synthase, mitochondrial; AltName: Full=Lipoate
           synthase; Short=LS; Short=Lip-syn; AltName: Full=Lipoic
           acid synthase; Flags: Precursor
 gi|83773416|dbj|BAE63543.1| unnamed protein product [Aspergillus oryzae]
          Length = 415

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/234 (15%), Positives = 85/234 (36%), Gaps = 20/234 (8%)

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQ-EGCDKFCTFCVVPYTR 199
           +R +   R ++     E+          G + K   TA + +  + C + C FC V   R
Sbjct: 117 QRLKKDLRGLNLHTVCEEARCPNISDCWGGSDKSAATATIMLMGDTCTRGCRFCSVKTNR 176

Query: 200 GIEISRSL----SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
                R       +  + A  +    +  + L   +    R    DG    F++ +  + 
Sbjct: 177 -----RPPPLDPHEPENTAEAISRWSLGYVVLTSVD----RDDLADGGARHFAETVIKIK 227

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV-LMPYLHLPVQSGSDRILKSMNRRHTAYE 314
           + K  + +   T         ++K      + +  +    V++ +  +     RR T  +
Sbjct: 228 QKKPSMLVECLTGDYLG-DLEMVKLVARSGLDVYAHNVETVEALTPFVRD---RRATFQQ 283

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
             ++++  +  RPD+   +  ++GF GET++     +  +  +G       +Y 
Sbjct: 284 SLRVLEAAKQARPDLITKTSLMLGF-GETEEQLWDALRQLRSVGVDVVTFGQYM 336


>gi|73663159|ref|YP_301940.1| lipoyl synthase [Staphylococcus saprophyticus subsp. saprophyticus
           ATCC 15305]
 gi|123734200|sp|Q49W64|LIPA_STAS1 RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|72495674|dbj|BAE18995.1| lipoate synthase [Staphylococcus saprophyticus subsp. saprophyticus
           ATCC 15305]
          Length = 313

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 42/256 (16%), Positives = 89/256 (34%), Gaps = 20/256 (7%)

Query: 112 AEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYN 171
            + EEILR+   + + +     Y   + + R +         ++V ++ +  +I +    
Sbjct: 3   TKNEEILRKPDWLKIKLNTNENYTGLKKMMREKN-------LHTVCEEAKCPNIHECWGE 55

Query: 172 RKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQN 231
           R+     F+ +   C + C FC V      E+   L +    A  +    +  + +    
Sbjct: 56  RR--TATFMILGAVCTRACRFCAVKTGLPNEL--DLDEPERVAESVELMNLKHVVITAV- 110

Query: 232 VNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL 291
               R    D     +++ +  + E      +    S      D L         ++ + 
Sbjct: 111 ---ARDDLRDAGSNVYAETVRKVRERNPFTSIEILPSDMGGDYDALETLMASKPDILNHN 167

Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351
              V+  +      +  R T     + + R + ++PDI   S  +VG  GET ++   TM
Sbjct: 168 IETVRRLTP----RVRARATYDRTLEFLRRSKELQPDIPTKSSLMVGL-GETHEEIYETM 222

Query: 352 DLVDKIGYAQAFSFKY 367
           D +           +Y
Sbjct: 223 DDLRANDVDILTIGQY 238


>gi|219670347|ref|YP_002460782.1| radical SAM protein [Desulfitobacterium hafniense DCB-2]
 gi|219540607|gb|ACL22346.1| Radical SAM domain protein [Desulfitobacterium hafniense DCB-2]
          Length = 618

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 54/346 (15%), Positives = 116/346 (33%), Gaps = 47/346 (13%)

Query: 72  IREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ 131
           +  +A E +   L  I+  K + +     LL V     A    E    R      +   +
Sbjct: 170 MIGEAEETLPQLLRLIQEQKENPVSREEFLLKVAQVEGAYV-PEFYQVRYLEDGRIQSIE 228

Query: 132 TYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCT 191
              R+P+++++A     V + D S       +  ++  ++R       L +  GC + C 
Sbjct: 229 ADPRVPKIVQKAI----VRNLDQSYFPTSPIVPYMEIVHDR-----MMLEVMRGCSRGCR 279

Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFSDL 250
           FC           RS   ++  A +L+ + G  EI+L   +          G+      +
Sbjct: 280 FCQAGMLYRPVRERSPETLLRHAEELVKSTGYEEISLTSLST---------GDYSCIQPV 330

Query: 251 LYSLSEI--KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
           +  + +   +  V +   +         L +    +      L    ++G+ R+   +N+
Sbjct: 331 IRGILDKYSEDKVSVSLPSLRLDSFDVKLAEEVQKVRK--SGLTFAPEAGTQRLRDVINK 388

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI-----GYAQAF 363
             T        +         +I   F++G P E  +D    + +  K+        +  
Sbjct: 389 GVTEENLLDAAESAFKAGWS-SIKLYFMIGLPTEAQEDLDGIVSMAKKVVELGTRLGRRN 447

Query: 364 S----------------FKYSPRLGTPGSNMLEQ-VDENVKAERLL 392
                            F++ P+ GT      +Q + E ++  R+ 
Sbjct: 448 VNVTVSTSSFVPKSHTPFQWEPQEGTASLKQKQQYLREKLRDRRIK 493


>gi|262168641|ref|ZP_06036336.1| lipoate synthase [Vibrio cholerae RC27]
 gi|262022759|gb|EEY41465.1| lipoate synthase [Vibrio cholerae RC27]
          Length = 315

 Score = 58.4 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 31/211 (14%), Positives = 70/211 (33%), Gaps = 12/211 (5%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V    G   +    +    A+ + D  +  + +   +    R    DG   
Sbjct: 88  CTRRCPFCDV--AHGRPNAPEAEEPKKLAQTIHDMKLKYVVITSVD----RDDLRDGGAQ 141

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
            F+D    +  +   +++       R   +  ++A  D     P +       + R+ + 
Sbjct: 142 HFADCNREIRALNPHIKIETLVPDFRGRMEVALEALKDNP---PDVFNHNLETAPRLYRK 198

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           +          +++ + +   P +   S  ++G  GET ++    +  +   G       
Sbjct: 199 VRPGANYKWSLELLRQFKEQHPHVPTKSGLMMGL-GETKEEIVEVLKDLRAHGVTMLTLG 257

Query: 366 KYSP--RLGTPGSNMLEQVDENVKAERLLCL 394
           +Y    R   P    +   + +   E  L L
Sbjct: 258 QYLAPSRHHLPVERYVPPAEFDELKEIALEL 288


>gi|289207829|ref|YP_003459895.1| radical SAM protein [Thioalkalivibrio sp. K90mix]
 gi|288943460|gb|ADC71159.1| Radical SAM domain protein [Thioalkalivibrio sp. K90mix]
          Length = 390

 Score = 58.4 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 38/213 (17%), Positives = 70/213 (32%), Gaps = 34/213 (15%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRS---------------LSQVVDEARKLIDNGVCE 224
           +T  EGC   C++C     R  E SR                  +V++  +   D G  E
Sbjct: 62  VTYPEGCRANCSYCG--LARHREESRDYADRNFIRVDWPTAKYDEVIERVKNHADGGQFE 119

Query: 225 ITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL 284
              +    +            T   L   ++E+  +       S+P  MS   ++   D 
Sbjct: 120 RMCISMITHPNSDAD------TVELLERWVAEVNHI--PVSILSNPTTMSYEDLQLLRD- 170

Query: 285 DVLMPYLHLPVQSGSDRIL-----KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGF 339
                   + + + +  I      KS+   H+  +Y Q I+    +       +  I G 
Sbjct: 171 -KGADIFTVALDAVTPEIFERTRGKSVESPHSWDKYWQAIEWAAEIFGPEKFGAHLICGM 229

Query: 340 PGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
            GET+++       +  +G      F + P  G
Sbjct: 230 -GETEEEILQVCQRIRDLG-GHNHMFAFFPEEG 260


>gi|114778915|ref|ZP_01453709.1| lipoyl synthase [Mariprofundus ferrooxydans PV-1]
 gi|114550831|gb|EAU53398.1| lipoyl synthase [Mariprofundus ferrooxydans PV-1]
          Length = 312

 Score = 58.4 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 36/208 (17%), Positives = 75/208 (36%), Gaps = 12/208 (5%)

Query: 161 ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN 220
           E  S  + G   K+G   F+ +   C + C FC V    G        + ++ A+ +   
Sbjct: 51  EEASCPNIGGCWKQGSATFMILGRVCTRTCAFCDV--ATGRPDPVDADEPLNLAKAVAQI 108

Query: 221 GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKA 280
           G+  + +   +    R    DG    ++ ++  L   +  V +   T   +   D  +  
Sbjct: 109 GLKHVVITSVD----RDDLKDGGAGHYATVIRELKARQPEVTIEILTPDFQRKPDSCLDT 164

Query: 281 -HGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGF 339
                  +  +    V     R+ +S+      +   +++ R + V  ++   S  +VG 
Sbjct: 165 IMAAGPDIFNHNLETV----PRLYRSVRPGARYFTSLRLLQRAKEVDANVVTKSGIMVGL 220

Query: 340 PGETDDDFRATMDLVDKIGYAQAFSFKY 367
            GE  D+    MD + + G       +Y
Sbjct: 221 -GEERDEILQVMDDMREAGIDILTIGQY 247


>gi|318603745|emb|CBY25243.1| coproporphyrinogen III oxidase,oxygen-independent [Yersinia
           enterocolitica subsp. palearctica Y11]
          Length = 457

 Score = 58.4 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 42/246 (17%), Positives = 87/246 (35%), Gaps = 16/246 (6%)

Query: 173 KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEI--TLLGQ 230
           +R ++ ++ I   C K C FC        +  +   + +    K I           + Q
Sbjct: 50  QRPLSLYVHIPF-CHKLCYFCGCNKLVTRQQHK-ADEYLAVLEKEIRQRAALFAGRQVSQ 107

Query: 231 NVNAWRGKGLDGEKCTFSDLLYSLSE----IKGLVRLRYTTSHPRDMSDCLIKAHGDLDV 286
            ++   G      K   + L+  L E    + G  +       PR++   ++        
Sbjct: 108 -MHWGGGTPTYLNKTQITHLMNLLRENFDFLPGAEQSIEV--DPREIELDVLDHLRAEG- 163

Query: 287 LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDD 346
               L + VQ  +  + + +NR         +I R +++  + + + D I G P +T + 
Sbjct: 164 -FNRLSMGVQDFNKEVQRLVNREQDEDFIFALIARAKALGFN-STNIDLIYGLPKQTPES 221

Query: 347 FRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSF 405
           F  T+  V ++   +   F Y+       +   ++  D     +RL  LQ  +     S 
Sbjct: 222 FAFTLKRVAELNPDRLSVFNYAHLPSLFAAQRKIKDADLPSAEQRLDILQHTISFLTESG 281

Query: 406 NDACVG 411
               +G
Sbjct: 282 YQ-FIG 286


>gi|268608942|ref|ZP_06142669.1| hypothetical protein RflaF_05529 [Ruminococcus flavefaciens FD-1]
          Length = 640

 Score = 58.4 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 50/270 (18%), Positives = 87/270 (32%), Gaps = 47/270 (17%)

Query: 150 VDTDYSVEDKFERLSIVD--GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRS 206
           +D  YS+    +     +  GG      V   +T   GC  +C FC +   +G  +  RS
Sbjct: 270 LDYVYSLPYTRQYHPSYEALGGVPGIEEVRFSITHNRGCFGYCNFCSIALHQGRRVTCRS 329

Query: 207 LSQVVDEARKLIDN-GVC-EITLLGQNVNAWRGKGLD---------GEKCT--------- 246
              V+ EA ++         I  +G     +R    D         G+KC          
Sbjct: 330 EESVLAEAERITKMPDFKGYIHDVGGPTADFRHPSCDKQLSKGLCMGKKCLAPKPCPALK 389

Query: 247 -----FSDLLYSLSEIKGLVR------LRYTTS---HPRDMSDCLIKAHGDLDVLMPYLH 292
                +  +L  L +IKG+ R      +RY         +    LI  H     +   L 
Sbjct: 390 VDHTEYLAMLRKLRKIKGVKRVFIRSGIRYDYLIEDKDDEFMKELIMHH-----VSGQLK 444

Query: 293 LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA----ISSDFIVGFPGETDDDFR 348
           +  +  S  +L  M + H    Y++   R   +   +     +    +   PG T ++  
Sbjct: 445 VAPEHCSAVVLDKMGKPH-IEAYKRFQKRFYEITKGMGKEQYLVPYLMSSHPGSTLNEAI 503

Query: 349 ATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
                +            + P  GT  + M
Sbjct: 504 ELALFLRDNKIRPEQVQDFYPTPGTISTAM 533


>gi|66047585|ref|YP_237426.1| lipoyl synthase [Pseudomonas syringae pv. syringae B728a]
 gi|71735432|ref|YP_276515.1| lipoyl synthase [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|257482220|ref|ZP_05636261.1| lipoyl synthase [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|298488993|ref|ZP_07007016.1| Lipoate synthase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
 gi|302185155|ref|ZP_07261828.1| lipoyl synthase [Pseudomonas syringae pv. syringae 642]
 gi|75500564|sp|Q4ZN84|LIPA_PSEU2 RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|123761164|sp|Q48DM6|LIPA_PSE14 RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|63258292|gb|AAY39388.1| Lipoate synthase [Pseudomonas syringae pv. syringae B728a]
 gi|71555985|gb|AAZ35196.1| lipoic acid synthetase [Pseudomonas syringae pv. phaseolicola
           1448A]
 gi|157644759|gb|ABV59088.1| lipoic acid synthetase [Pseudomonas syringae pv. averrhoi]
 gi|298156491|gb|EFH97588.1| Lipoate synthase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
 gi|320322696|gb|EFW78789.1| lipoyl synthase [Pseudomonas syringae pv. glycinea str. B076]
 gi|320330519|gb|EFW86498.1| lipoyl synthase [Pseudomonas syringae pv. glycinea str. race 4]
 gi|330873692|gb|EGH07841.1| lipoyl synthase [Pseudomonas syringae pv. glycinea str. race 4]
 gi|330887939|gb|EGH20600.1| lipoyl synthase [Pseudomonas syringae pv. mori str. 301020]
 gi|330953018|gb|EGH53278.1| lipoyl synthase [Pseudomonas syringae Cit 7]
 gi|330969443|gb|EGH69509.1| lipoyl synthase [Pseudomonas syringae pv. aceris str. M302273PT]
 gi|330987608|gb|EGH85711.1| lipoyl synthase [Pseudomonas syringae pv. lachrymans str. M301315]
 gi|331011317|gb|EGH91373.1| lipoyl synthase [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 335

 Score = 58.4 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 34/215 (15%), Positives = 74/215 (34%), Gaps = 12/215 (5%)

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           + +    E  S  + G     G   F+ + + C + C FC V + R   +   +++    
Sbjct: 75  HKLHSVCEEASCPNLGECFSGGTATFMIMGDICTRRCPFCDVGHGRPKPL--DVNEPKSL 132

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI-KGLVRLRYTTSHPRD 272
           A  + D  +  + +   +    R    DG    F+D +  +  +  G+        +   
Sbjct: 133 AIAIADLRLKYVVITSVD----RDDLRDGGAQHFADCIREIRLLSPGVQLETLVPDYRGR 188

Query: 273 MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAIS 332
           M   L     +   +  +    V     R+ K+            ++ R + + P +   
Sbjct: 189 MDVALEITAAEPPDVFNHNLETV----PRLYKAARPGSDYQWSLTLLQRFKQMVPHVPTK 244

Query: 333 SDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           S  ++G  GETD++    M  + +         +Y
Sbjct: 245 SGLMLGL-GETDEEVIEVMQRMREHDIDMLTLGQY 278


>gi|88704955|ref|ZP_01102667.1| Lipoyl synthase [Congregibacter litoralis KT71]
 gi|88700650|gb|EAQ97757.1| Lipoyl synthase [Congregibacter litoralis KT71]
          Length = 331

 Score = 58.4 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 31/226 (13%), Positives = 79/226 (34%), Gaps = 21/226 (9%)

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT--RGIEISR 205
           + +  ++ +    E     +       G    + + + C + C FC V     RG   S 
Sbjct: 61  KSIVHEHRLATVCEEAKCPNMSECWSAGTATIMLMGDVCTRACRFCAVNTGNPRGWLDSE 120

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
                 + AR +   G+  + L   N    R    DG    ++  +  + E+        
Sbjct: 121 EPD---NTARSVQLMGLKYVVLTSVN----RDDLPDGGAGHYAACVRRVKEVNA------ 167

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR----RHTAYEYRQIIDR 321
             +    ++   + +  D++ ++           + + +  +     R    +  +++  
Sbjct: 168 -ATAVEALTPDFLGSLADVETVVDSGVEVFAQNVETVRRLTHPVRDPRAGYEQTLEVLAH 226

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
            +  RPD+   +  ++G  GETD++ R  ++ + +         +Y
Sbjct: 227 AKKHRPDVLTKTSLMLGL-GETDEEIREALEDLRRAKVDIVTFGQY 271


>gi|330938274|gb|EGH41935.1| lipoyl synthase [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 312

 Score = 58.4 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 34/215 (15%), Positives = 74/215 (34%), Gaps = 12/215 (5%)

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           + +    E  S  + G     G   F+ + + C + C FC V + R   +   +++    
Sbjct: 52  HKLHSVCEEASCPNLGECFSGGTATFMIMGDICTRRCPFCDVGHGRPKPL--DVNEPKSL 109

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI-KGLVRLRYTTSHPRD 272
           A  + D  +  + +   +    R    DG    F+D +  +  +  G+        +   
Sbjct: 110 AIAIADLRLKYVVITSVD----RDDLRDGGAQHFADCIREIRLLSPGVQLETLVPDYRGR 165

Query: 273 MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAIS 332
           M   L     +   +  +    V     R+ K+            ++ R + + P +   
Sbjct: 166 MDVALEITAAEPPDVFNHNLETV----PRLYKAARPGSDYQWSLTLLQRFKQMVPHVPTK 221

Query: 333 SDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           S  ++G  GETD++    M  + +         +Y
Sbjct: 222 SGLMLGL-GETDEEVIEVMQRMREHDIDMLTLGQY 255


>gi|254521222|ref|ZP_05133277.1| lipoic acid synthetase [Stenotrophomonas sp. SKA14]
 gi|219718813|gb|EED37338.1| lipoic acid synthetase [Stenotrophomonas sp. SKA14]
          Length = 336

 Score = 58.4 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 34/212 (16%), Positives = 72/212 (33%), Gaps = 18/212 (8%)

Query: 161 ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS--QVVDEARKLI 218
           E  S  +       G   F+ + E C + C+FC V + R           +     + + 
Sbjct: 82  EEASCPNIHECFGHGTATFMILGEVCTRRCSFCDVAHGRPK----PPDANEPASLGQTVA 137

Query: 219 DNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD---MSD 275
           D G+  + +   +    R    DG    F D + ++ E     R+   T   R    M  
Sbjct: 138 DMGLKYVVVTSVD----RDDLRDGGAQHFVDCISAIREKSPGTRIEVLTPDFRGKGRMER 193

Query: 276 CLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDF 335
            L     +   +  +    +++  D   +++           ++   ++  P++   S  
Sbjct: 194 ALEILAQNPPDVFNH---NIETVPDLY-RNVRPGADYQWSLNLLKNFKAQHPEVPTKSGI 249

Query: 336 IVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           ++G  GE  +  +ATM  +           +Y
Sbjct: 250 MLGL-GEEFEQIKATMRDLRAHDVDMITIGQY 280


>gi|159896716|ref|YP_001542963.1| lipoyl synthase [Herpetosiphon aurantiacus ATCC 23779]
 gi|159889755|gb|ABX02835.1| lipoic acid synthetase [Herpetosiphon aurantiacus ATCC 23779]
          Length = 306

 Score = 58.4 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 43/243 (17%), Positives = 82/243 (33%), Gaps = 16/243 (6%)

Query: 130 PQTYYRLPELLERARFGKRVVDT-----DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQE 184
                R PE L +      + +      D ++    E  S  +       G   F+   +
Sbjct: 4   TPHRQRKPEWLRKPVLSPELRNVRQLLRDLNLNTVCEEASCPNIAECFGHGTATFMIGGD 63

Query: 185 GCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK 244
            C + C +C V  T G        +  + A      G+  + +        R    DG  
Sbjct: 64  RCTRRCHYCDV--TTGKPFPLDPREPSNVAEAAARLGLKYVVVTAV----ARDDVKDGGA 117

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304
             F+  + ++ +      +       +  ++ L         ++ +    V+S    + K
Sbjct: 118 RHFARTISAIRQRLPEAEVEVLIPDFKGEAEALKTVLDAEPHVLNHNIETVRS----VFK 173

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
           S+  +       +++ R R   P I   S F+VG  GET D+   TMD +  +G      
Sbjct: 174 SVRPQGDYDRSLELLARSREFAPQITTKSGFMVGL-GETTDEIYQTMDDLKHVGVELVTI 232

Query: 365 FKY 367
            +Y
Sbjct: 233 GQY 235


>gi|325297201|ref|YP_004257118.1| oxygen-independent coproporphyrinogen III oxidase [Bacteroides
           salanitronis DSM 18170]
 gi|324316754|gb|ADY34645.1| oxygen-independent coproporphyrinogen III oxidase [Bacteroides
           salanitronis DSM 18170]
          Length = 377

 Score = 58.4 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 43/232 (18%), Positives = 82/232 (35%), Gaps = 18/232 (7%)

Query: 186 CDKFCTFCVV-PYTRGIEISRSLSQVVDEARKLID----NGVCEITLLGQNVNAWRGKGL 240
           C + C +C     T+  +  R +  +  E  +  D      +  + + G   +  + K  
Sbjct: 11  CKRRCIYCDFFSTTQSGQTDRYIEALCAELEQRKDYLEDEEIETVYMGGGTPSQLQEKHF 70

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300
           +       D LY    I+    +    ++P D+    I+           L + +Q+ +D
Sbjct: 71  E----ALFDTLYHHYSIRPDAEITIE-ANPDDLHPTYIRMLRHFP--FNRLSMGIQTFND 123

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
             L  + RRH A +  +     R       IS D + G PGET   ++A +     +   
Sbjct: 124 ATLSVLQRRHNARQALEAFWNCREAGFG-NISIDLMYGLPGETLATWQADLKQAVTLHPE 182

Query: 361 QAFSFKYSPRLGTPGSNMLEQ-----VDENVKAERLLCLQKKLREQQVSFND 407
              ++      GTP   + EQ     +DE++       L   L+       +
Sbjct: 183 HISAYHLIYEEGTPLWKLREQHRVNEIDEDLSVNLFSELIHTLKNAGYEHYE 234


>gi|332519124|ref|ZP_08395591.1| Radical SAM domain protein [Lacinutrix algicola 5H-3-7-4]
 gi|332044972|gb|EGI81165.1| Radical SAM domain protein [Lacinutrix algicola 5H-3-7-4]
          Length = 651

 Score = 58.4 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 59/358 (16%), Positives = 118/358 (32%), Gaps = 68/358 (18%)

Query: 151 DTDYSVEDKFERLSIV----DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SR 205
           + D S +  + RL        G       +   + I  GC   C+FC +   +G  I SR
Sbjct: 279 EIDASFDLPYTRLPHPKYNKRGPIPAYEMIKTSINIHRGCFGGCSFCTISAHQGKFIASR 338

Query: 206 SLSQVVDEARKLIDNGVCEITLL---GQNVNAWRGKG----------------------L 240
           S   ++ E  K+ +    +  L    G + N ++ KG                      L
Sbjct: 339 SQESILKEVDKVANMPDFKGYLSDIGGPSANMYQMKGKVQSICDKCVAPSCISPVICSNL 398

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM----------SDCLIKAHGD--LDVLM 288
           D      +DL  ++ +   + +    +    DM             L     +     + 
Sbjct: 399 DTSHKPLTDLYKAVDKHPKVKKSFIGSGIRHDMLVPEFNKNADPKELDDYTEEVMTKHVS 458

Query: 289 PYLHLPVQSGSDRILKSMNRR--HTAYEYRQIIDRIRSVRPDIAISS--DFIVGFPGETD 344
             L +  +  SD +LK M +      +++++  D+I +++ ++ +     FI   P    
Sbjct: 459 GRLKVAPEHTSDPVLKLMRKPSFTYFHKFKERFDKI-NIKKNLKLQLIPYFISNHPACEV 517

Query: 345 DDFRATMDLVDKIGYAQAFSFKYSPRLGTPG----------SNMLEQVDENVKAE----- 389
           +D          +G+       ++P   T              + +      + E     
Sbjct: 518 EDMANLAAETKDMGFQLEQVQGFTPTPMTVATVIYYSGYHPYTLKKVNTPKTRKEKDEQH 577

Query: 390 RLLCLQKKLREQQVSFNDACVGQI--IEVLI----EKHGKEKGKLVGRSPWLQSVVLN 441
           R     K   +  +      VG+   ++VL+    EK  K K K   ++ +  +V  N
Sbjct: 578 RFFFWYKDENKAWIKKTLNKVGRQDLLKVLLPEKSEKWRKNKPKGEAKNTFNDAVPFN 635


>gi|224370295|ref|YP_002604459.1| predicted Fe-S oxidoreductase [Desulfobacterium autotrophicum HRM2]
 gi|223693012|gb|ACN16295.1| predicted Fe-S oxidoreductase [Desulfobacterium autotrophicum HRM2]
          Length = 308

 Score = 58.4 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 32/205 (15%), Positives = 62/205 (30%), Gaps = 17/205 (8%)

Query: 185 GCDKF--------CTFCVVPYTRGIEISR--SLSQVVDEARKLIDNGVCEITLLGQNVNA 234
           GC           C +C    +     S+  S+SQ ++  RK +         L   V  
Sbjct: 32  GCPNRDGTIARGGCIYCNAKGSGSGLFSQGLSISQQIENGRKAMIRRYKASLFL---VYF 88

Query: 235 WRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV-LMPYLHL 293
                          +      + G+V +   T  P  +    +          + ++  
Sbjct: 89  QSYTNTYTSCANMKKMYDQALSVPGMVGMAIGT-RPDCVDPEKLDLIASYTKDYLVWVEY 147

Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
            +QS  +  L+ +NR H    + + +   R     + + +  I+G PGE       T   
Sbjct: 148 GLQSIHNSTLERINRGHDFACFERAVTMTRER--GVKVCAHVILGLPGEDRSMMLETARA 205

Query: 354 VDKIGYAQAFSFKYSPRLGTPGSNM 378
           + ++              GT    M
Sbjct: 206 LGRLKIDGVKIHLLYVVKGTALETM 230


>gi|241661806|ref|YP_002980166.1| lipoyl synthase [Ralstonia pickettii 12D]
 gi|240863833|gb|ACS61494.1| lipoic acid synthetase [Ralstonia pickettii 12D]
          Length = 333

 Score = 58.4 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 32/208 (15%), Positives = 73/208 (35%), Gaps = 12/208 (5%)

Query: 161 ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN 220
           E  S  + G    +G   F+ + + C + C FC V + R   +   +++  + A+ +   
Sbjct: 81  EEASCPNIGECFGKGTATFMIMGDKCTRRCPFCDVGHGRPDPL--DVNEPENLAKTIAQL 138

Query: 221 GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKA 280
            +  + +   +    R    DG    + D +     +    R+       R   +  +  
Sbjct: 139 KLNYVVITSVD----RDDLRDGGAQHYVDCISRTRALSPATRIEVLVPDFRGRLEKALDI 194

Query: 281 HGDLDV-LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGF 339
             +    +M +    V     R+ K            +++   ++  P++   S  +VG 
Sbjct: 195 LQECPPDVMNHNLETV----PRLYKQARPGADYAHSLKLLKDFKARNPNVPTKSGLMVGL 250

Query: 340 PGETDDDFRATMDLVDKIGYAQAFSFKY 367
            GETD++    M  + +         +Y
Sbjct: 251 -GETDEEILEVMRDMREHDIDMLTIGQY 277


>gi|306816645|ref|ZP_07450777.1| hypothetical protein ECNC101_08504 [Escherichia coli NC101]
 gi|305850210|gb|EFM50669.1| hypothetical protein ECNC101_08504 [Escherichia coli NC101]
          Length = 739

 Score = 58.4 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 48/297 (16%), Positives = 98/297 (32%), Gaps = 58/297 (19%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDN--GVCEIT--LLGQNVNA 234
           + I  GC   C+FC +    G  I SRS   +++E   + D   G   +   L G   N 
Sbjct: 380 VNIMRGCFGGCSFCSITEHEGRIIQSRSEDSIINEIEAIRDTVPGFTGVISDLGGPTANM 439

Query: 235 WR----------------------GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
           +                          +D       +L     ++KG+ ++   +    D
Sbjct: 440 YMLRCKSPRAEQTCRRLSCVYPDICPHMDTNHEPTINLYRRARDLKGIKKILIASGVRYD 499

Query: 273 MSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRRH--TAYEYRQIIDRI-RSVRP 327
           ++    +   +L    +  YL +  +   +  L  M +    +   ++++ D   +    
Sbjct: 500 IAVEDPRYIKELATHHVGGYLKIAPEHTEEGPLSKMMKPGMGSYDRFKELFDTYSKQAGK 559

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGY--AQAFSFKYSPRLGT---------PGS 376
           +  +   FI   PG  D+D       + K  +   Q  +F  SP   +         P +
Sbjct: 560 EQYLIPYFISAHPGTRDEDMVNLALWLKKHRFRLDQVQNFYPSPLANSTTMYYTGKNPLA 619

Query: 377 NMLEQ-----VDENVKAERL-LCLQK--------KLREQQVSF-NDACVGQIIEVLI 418
            +  +     V +  K  RL   L +         +R+   +      +G   + L+
Sbjct: 620 KIGYKSEDVFVPKGDKQRRLHKALLRYHDPANWPLIRQALEAMGKKHLIGSRRDCLV 676


>gi|260459495|ref|ZP_05807750.1| lipoic acid synthetase [Mesorhizobium opportunistum WSM2075]
 gi|259035049|gb|EEW36305.1| lipoic acid synthetase [Mesorhizobium opportunistum WSM2075]
          Length = 321

 Score = 58.4 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 35/241 (14%), Positives = 81/241 (33%), Gaps = 11/241 (4%)

Query: 127 VVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGC 186
           V+    + R+   + +     R +   + +    E     + G   ++    F+ + E C
Sbjct: 27  VLRKPDWIRVKAPVSKGYAETREIVKSHKLVTVCEEAGCPNIGECWEKKHATFMIMGEIC 86

Query: 187 DKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT 246
            + C FC V    GI  +    +    A  +   G+  + +   +    R    DG    
Sbjct: 87  TRACAFCNV--ATGIPTALDPDEPARVAHAVKQMGLSHVVITSVD----RDDLADGGAQH 140

Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306
           F++++ ++        +   T         L         +  +    +++     LK +
Sbjct: 141 FAEVIRAIRAATPSTTIEILTPDFLRKDGALEIVVAAKPDVFNH---NLETVPSNYLK-V 196

Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
                 +   +++ R++ + P I   S  +VG  GE  ++    MD +           +
Sbjct: 197 RPGARYFHSIRLLQRVKELDPSIFTKSGIMVGL-GEERNEILQLMDDLRSANVDFMTIGQ 255

Query: 367 Y 367
           Y
Sbjct: 256 Y 256


>gi|332159651|ref|YP_004296228.1| coproporphyrinogen III oxidase [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325663881|gb|ADZ40525.1| coproporphyrinogen III oxidase [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330858977|emb|CBX69336.1| oxygen-independent coproporphyrinogen-III oxidase [Yersinia
           enterocolitica W22703]
          Length = 457

 Score = 58.4 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 42/246 (17%), Positives = 87/246 (35%), Gaps = 16/246 (6%)

Query: 173 KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEI--TLLGQ 230
           +R ++ ++ I   C K C FC        +  +   + +    K I           + Q
Sbjct: 50  QRPLSLYVHIPF-CHKLCYFCGCNKLVTRQQHK-ADEYLAVLEKEIRQRAALFAGRQVSQ 107

Query: 231 NVNAWRGKGLDGEKCTFSDLLYSLSE----IKGLVRLRYTTSHPRDMSDCLIKAHGDLDV 286
            ++   G      K   + L+  L E    + G  +       PR++   ++        
Sbjct: 108 -MHWGGGTPTYLNKTQITHLMNLLRENFDFLPGAEQSIEV--DPREIELDVLDHLRAEG- 163

Query: 287 LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDD 346
               L + VQ  +  + + +NR         +I R +++  + + + D I G P +T + 
Sbjct: 164 -FNRLSMGVQDFNKEVQRLVNREQDEDFIFALIARAKALGFN-STNIDLIYGLPKQTPES 221

Query: 347 FRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSF 405
           F  T+  V ++   +   F Y+       +   ++  D     +RL  LQ  +     S 
Sbjct: 222 FAFTLKRVAELNPDRLSVFNYAHLPSLFAAQRKIKDADLPSAEQRLDILQHTISFLTESG 281

Query: 406 NDACVG 411
               +G
Sbjct: 282 YQ-FIG 286


>gi|288933545|ref|YP_003437604.1| radical SAM protein [Klebsiella variicola At-22]
 gi|290511396|ref|ZP_06550765.1| ygiQ [Klebsiella sp. 1_1_55]
 gi|288888274|gb|ADC56592.1| Radical SAM domain protein [Klebsiella variicola At-22]
 gi|289776389|gb|EFD84388.1| ygiQ [Klebsiella sp. 1_1_55]
          Length = 727

 Score = 58.4 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 49/316 (15%), Positives = 98/316 (31%), Gaps = 58/316 (18%)

Query: 161 ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLID 219
              +  D        +   + I  GC   C+FC +    G  I SRS   +++E   + D
Sbjct: 361 PHPAYGDARIPAYEMIRFSINIMRGCFGGCSFCSITEHEGRIIQSRSEDSIINEIEAIRD 420

Query: 220 N--GVCEIT--LLGQNVNAWR----------------------GKGLDGEKCTFSDLLYS 253
              G   +   L G   N +                          +D       +L   
Sbjct: 421 TVPGFTGVISDLGGPTANMYMLRCKSPRAEQTCRRLSCVYPDICPHMDTNHEPTINLYRR 480

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRRH- 310
             E+KG+ ++   +    D++    +   +L    +  YL +  +   +  L  M +   
Sbjct: 481 ARELKGIKKILIASGVRYDIAVEDPRYIKELATHHVGGYLKIAPEHTEEGPLSKMMKPGM 540

Query: 311 -TAYEYRQIIDRI-RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY--AQAFSFK 366
            +   ++++ D   +    +  +   FI   PG  D+D       + K  +   Q  +F 
Sbjct: 541 GSYDRFKELFDTYSKQAGKEQYLIPYFISAHPGTRDEDMVNLALWLKKHRFRLDQVQNFY 600

Query: 367 YSPRLGTPGSNMLEQ--------------VDENVKAERL-LCLQK--------KLREQQV 403
            SP   +       +              V +  K  RL   L +         +R+   
Sbjct: 601 PSPLANSTTMYYTGKNPLGKIGYKSEEVVVPKGDKQRRLHKALLRYHDPANWPLIRQALE 660

Query: 404 SF-NDACVGQIIEVLI 418
           +      +G   + L+
Sbjct: 661 AMGKKHLIGSRRDCLV 676


>gi|288937893|ref|YP_003441952.1| oxygen-independent coproporphyrinogen III oxidase [Klebsiella
           variicola At-22]
 gi|288892602|gb|ADC60920.1| oxygen-independent coproporphyrinogen III oxidase [Klebsiella
           variicola At-22]
          Length = 457

 Score = 58.4 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 40/255 (15%), Positives = 88/255 (34%), Gaps = 34/255 (13%)

Query: 173 KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS-------LSQVVDEARKLIDNGVCEI 225
           +R ++ ++ I   C K C FC        +  ++         +++  A +     V ++
Sbjct: 50  QRPLSLYVHIPF-CHKLCYFCGCNKIVTRQQHKADQYLDVLEQEIIHRAPQFASRQVKQL 108

Query: 226 TLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLD 285
              G                        +S +  L+R  +  S   ++S  +     +LD
Sbjct: 109 HWGGGTPTY--------------LNKAQISRLMDLLRSHFHFSAEAEISIEVDPREIELD 154

Query: 286 VL-------MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS-DFIV 337
           VL          L + VQ  +  + + +NR         ++   R +      ++ D I 
Sbjct: 155 VLDHLRTEGFNRLSMGVQDFNKEVQRLVNREQDEAFIFDLLHHAREI--GFTSTNIDLIY 212

Query: 338 GFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQK 396
           G P +T + F  T+  V ++   +   F Y+       +   ++  D     ++L  LQ+
Sbjct: 213 GLPKQTPESFAFTLQKVAELNPDRLSVFNYAHLPTLFAAQRKIKDADLPSAEQKLEILQE 272

Query: 397 KLREQQVSFNDACVG 411
            +     +     +G
Sbjct: 273 TIGSLTAAGYQ-FIG 286


>gi|237706239|ref|ZP_04536720.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|226899279|gb|EEH85538.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
          Length = 739

 Score = 58.4 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 48/297 (16%), Positives = 98/297 (32%), Gaps = 58/297 (19%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDN--GVCEIT--LLGQNVNA 234
           + I  GC   C+FC +    G  I SRS   +++E   + D   G   +   L G   N 
Sbjct: 380 VNIMRGCFGGCSFCSITEHEGRIIQSRSEDSIINEIEAIRDTVPGFTGVISDLGGPTANM 439

Query: 235 WR----------------------GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
           +                          +D       +L     ++KG+ ++   +    D
Sbjct: 440 YMLRCKSPRAEQTCRRLSCVYPDICPHMDTNHEPTINLYRRARDLKGIKKILIASGVRYD 499

Query: 273 MSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRRH--TAYEYRQIIDRI-RSVRP 327
           ++    +   +L    +  YL +  +   +  L  M +    +   ++++ D   +    
Sbjct: 500 IAVEDPRYIKELATHHVGGYLKIAPEHTEEGPLSKMMKPGMGSYDRFKELFDTYSKQAGK 559

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGY--AQAFSFKYSPRLGT---------PGS 376
           +  +   FI   PG  D+D       + K  +   Q  +F  SP   +         P +
Sbjct: 560 EQYLIPYFISAHPGTRDEDMVNLALWLKKHRFRLDQVQNFYPSPLANSTTMYYTGKNPLA 619

Query: 377 NMLEQ-----VDENVKAERL-LCLQK--------KLREQQVSF-NDACVGQIIEVLI 418
            +  +     V +  K  RL   L +         +R+   +      +G   + L+
Sbjct: 620 KIGYKSEDVFVPKGDKQRRLHKALLRYHDPANWPLIRQALEAMGKKHLIGSRRDCLV 676


>gi|169824480|ref|YP_001692091.1| oxygen-independent coproporphyrinogen III oxidase [Finegoldia magna
           ATCC 29328]
 gi|167831285|dbj|BAG08201.1| oxygen-independent coproporphyrinogen III oxidase [Finegoldia magna
           ATCC 29328]
          Length = 367

 Score = 58.4 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 34/204 (16%), Positives = 64/204 (31%), Gaps = 20/204 (9%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           CD  C +C                  +   +       EIT+   N N        G   
Sbjct: 11  CDYKCNYCDFSTMTKQY---------NRVDEYFRLLQKEITIYK-NPNEKIDTIYIGGGT 60

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY-------LHLPVQSG 298
                   + EI  L+   +     ++ +          + +  Y       + L VQS 
Sbjct: 61  PNLVDSKYIKEIYNLLNKSF-DLQIKEFTIECNPEFVTKEKIESYKSIGVDRISLGVQSF 119

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           +D   + + R H   +  +  + I+    +I+I  D I GFP +T +     ++ + K+ 
Sbjct: 120 NDEYNRFLGRGHKVTDVLKSFEIIKQYIDNISI--DLIFGFPNQTLESLDNDLNYIRKLA 177

Query: 359 YAQAFSFKYSPRLGTPGSNMLEQV 382
                 +      GT      E +
Sbjct: 178 PNHVSWYNMILEPGTKFYKDYEDI 201


>gi|152994288|ref|YP_001339123.1| radical SAM domain-containing protein [Marinomonas sp. MWYL1]
 gi|150835212|gb|ABR69188.1| Radical SAM domain protein [Marinomonas sp. MWYL1]
          Length = 647

 Score = 58.4 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 75/223 (33%), Gaps = 24/223 (10%)

Query: 180 LTIQEGCDKF-CTFCVVPYTRGIEISRSLSQV-VDEARKLIDNGVCEITLLGQNVNAWRG 237
           LTI  GC    C+FC V          + + + VD   +LI          GQ       
Sbjct: 372 LTIAHGCYWRKCSFCDVTLDYIDRYDAAGADILVDRIEELIAE-------TGQ-TGFHFV 423

Query: 238 KGLDGEKCTFSDLLYSLSE---IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP 294
                 K  F+     +     I     +R+     +  +    +   D   +       
Sbjct: 424 DEAAPPKALFALARRLIERGVVISWWGNIRF----EKTFTPERCQLLADSGCIAVSG--G 477

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           ++  SDR+LK M +  +  +  ++          I + S  + GFP +T+ +    +++V
Sbjct: 478 LEVASDRLLKLMKKGVSVEQVARVTKAFSDA--GILVHSYLMYGFPTQTEQETIDALEMV 535

Query: 355 DKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN---VKAERLLCL 394
            ++   + F   +  R      + +    E      AER   L
Sbjct: 536 RQMMANECFQSAFWHRFAATAHSPIGINPEEYGITLAERPDIL 578


>gi|153955195|ref|YP_001395960.1| methyltransferase [Clostridium kluyveri DSM 555]
 gi|146348053|gb|EDK34589.1| Predicted methyltransferase [Clostridium kluyveri DSM 555]
          Length = 493

 Score = 58.4 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 44/328 (13%), Positives = 100/328 (30%), Gaps = 25/328 (7%)

Query: 57  NSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEE 116
           + +  AD + ++   I+    E     + R + L    +                     
Sbjct: 61  DDIKWADFVFISAMVIQ---KESARDLINRCKKLGVKTVAGEPLFT-------------S 104

Query: 117 ILRRSPIVNVVVGPQTYYRLPELLERARFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRG 175
             +    V+ +V  +    +PE L        + + T     D  +  + +    +    
Sbjct: 105 EYQDFDDVDYLVLGEGELTIPEFLHDLDNNCLKHMYTTNEWADLSQTPAPLWNLIDMSNY 164

Query: 176 VTAFLTIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVC-EITLLGQNVN 233
            T  +    GC   C FC +    G    ++ +  ++ E   + + G    I  +  N  
Sbjct: 165 ATLNIQYSRGCPFNCEFCDITTLFGRIPRTKPVKHLISELDAIYEMGWKGSIFFVDDNF- 223

Query: 234 AWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHL 293
              G     ++     L+  L +           S      D L+     +      + +
Sbjct: 224 --IGNRKKLKEEVLPALIEWLEQRDYPFSFLTEASINLSDDDELMNLM--VRAGFKTVFI 279

Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
            +++ S+  L   N+        +   + +  R  + +   FI+GF  +    F+  +  
Sbjct: 280 GIETVSEESLTECNKVQNKNRNLEECVK-KIQRNGLQVQGGFIIGFDSDNKTIFKKMIRF 338

Query: 354 VDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +   G   A     +   GT     L++
Sbjct: 339 IQDTGIVTAMVGLLNAPRGTLLYKRLKK 366


>gi|323188555|gb|EFZ73840.1| radical SAM superfamily protein [Escherichia coli RN587/1]
          Length = 739

 Score = 58.4 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 48/297 (16%), Positives = 98/297 (32%), Gaps = 58/297 (19%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDN--GVCEIT--LLGQNVNA 234
           + I  GC   C+FC +    G  I SRS   +++E   + D   G   +   L G   N 
Sbjct: 380 VNIMRGCFGGCSFCSITEHEGRIIQSRSEDSIINEIEAIRDTVPGFTGVISDLGGPTANM 439

Query: 235 WR----------------------GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
           +                          +D       +L     ++KG+ ++   +    D
Sbjct: 440 YMLRCKSPRAEQTCRRLSCVYPDICPHMDTNHEPTINLYRRARDLKGIKKILIASGVRYD 499

Query: 273 MSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRRH--TAYEYRQIIDRI-RSVRP 327
           ++    +   +L    +  YL +  +   +  L  M +    +   ++++ D   +    
Sbjct: 500 IAVEDPRYIKELATHHVGGYLKIAPEHTEEGPLSKMMKPGMGSYDRFKELFDTYSKQAGK 559

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGY--AQAFSFKYSPRLGT---------PGS 376
           +  +   FI   PG  D+D       + K  +   Q  +F  SP   +         P +
Sbjct: 560 EQYLIPYFISAHPGTRDEDMVNLALWLKKHRFRLDQVQNFYPSPLANSTTMYYTGKNPLA 619

Query: 377 NMLEQ-----VDENVKAERL-LCLQK--------KLREQQVSF-NDACVGQIIEVLI 418
            +  +     V +  K  RL   L +         +R+   +      +G   + L+
Sbjct: 620 KIGYKSEDVFVPKGDKQRRLHKALLRYHDPANWPLIRQALEAMGKKHLIGSRRDCLV 676


>gi|300973303|ref|ZP_07172142.1| radical SAM domain protein [Escherichia coli MS 45-1]
 gi|300410883|gb|EFJ94421.1| radical SAM domain protein [Escherichia coli MS 45-1]
          Length = 739

 Score = 58.4 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 48/297 (16%), Positives = 98/297 (32%), Gaps = 58/297 (19%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDN--GVCEIT--LLGQNVNA 234
           + I  GC   C+FC +    G  I SRS   +++E   + D   G   +   L G   N 
Sbjct: 380 VNIMRGCFGGCSFCSITEHEGRIIQSRSEDSIINEIEAIRDTVPGFTGVISDLGGPTANM 439

Query: 235 WR----------------------GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
           +                          +D       +L     ++KG+ ++   +    D
Sbjct: 440 YMLRCKSPRAEQTCRRLSCVYPDICPHMDTNHEPTINLYRRARDLKGIKKILIASGVRYD 499

Query: 273 MSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRRH--TAYEYRQIIDRI-RSVRP 327
           ++    +   +L    +  YL +  +   +  L  M +    +   ++++ D   +    
Sbjct: 500 IAVEDPRYIKELATHHVGGYLKIAPEHTEEGPLSKMMKPGMGSYDRFKELFDTYSKQAGK 559

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGY--AQAFSFKYSPRLGT---------PGS 376
           +  +   FI   PG  D+D       + K  +   Q  +F  SP   +         P +
Sbjct: 560 EQYLIPYFISAHPGTRDEDMVNLALWLKKHRFRLDQVQNFYPSPLANSTTMYYTGKNPLA 619

Query: 377 NMLEQ-----VDENVKAERL-LCLQK--------KLREQQVSF-NDACVGQIIEVLI 418
            +  +     V +  K  RL   L +         +R+   +      +G   + L+
Sbjct: 620 KIGYKSEDVFVPKGDKQRRLHKALLRYHDPANWPLIRQALEAMGKKHLIGSRRDCLV 676


>gi|91212427|ref|YP_542413.1| hypothetical protein UTI89_C3435 [Escherichia coli UTI89]
 gi|117625317|ref|YP_854518.1| hypothetical protein APECO1_3410 [Escherichia coli APEC O1]
 gi|170681820|ref|YP_001745280.1| hypothetical protein EcSMS35_3300 [Escherichia coli SMS-3-5]
 gi|218560088|ref|YP_002393001.1| hypothetical protein ECS88_3395 [Escherichia coli S88]
 gi|218691307|ref|YP_002399519.1| hypothetical protein ECED1_3667 [Escherichia coli ED1a]
 gi|227887720|ref|ZP_04005525.1| possible Fe-S oxidoreductase [Escherichia coli 83972]
 gi|300993195|ref|ZP_07180258.1| radical SAM domain protein [Escherichia coli MS 200-1]
 gi|301048169|ref|ZP_07195206.1| radical SAM domain protein [Escherichia coli MS 185-1]
 gi|331684659|ref|ZP_08385251.1| Fe-S oxidoreductase [Escherichia coli H299]
 gi|91074001|gb|ABE08882.1| conserved hypothetical protein [Escherichia coli UTI89]
 gi|115514441|gb|ABJ02516.1| putative Fe-S oxidoreductase [Escherichia coli APEC O1]
 gi|170519538|gb|ACB17716.1| radical SAM domain protein [Escherichia coli SMS-3-5]
 gi|218366857|emb|CAR04627.1| conserved hypothetical protein [Escherichia coli S88]
 gi|218428871|emb|CAR09816.2| conserved hypothetical protein [Escherichia coli ED1a]
 gi|222034735|emb|CAP77477.1| UPF0313 protein ygiQ [Escherichia coli LF82]
 gi|227835116|gb|EEJ45582.1| possible Fe-S oxidoreductase [Escherichia coli 83972]
 gi|294493572|gb|ADE92328.1| radical SAM domain protein [Escherichia coli IHE3034]
 gi|300300005|gb|EFJ56390.1| radical SAM domain protein [Escherichia coli MS 185-1]
 gi|300305121|gb|EFJ59641.1| radical SAM domain protein [Escherichia coli MS 200-1]
 gi|307555107|gb|ADN47882.1| Fe-S oxidoreductase [Escherichia coli ABU 83972]
 gi|307625384|gb|ADN69688.1| hypothetical protein UM146_01295 [Escherichia coli UM146]
 gi|312947573|gb|ADR28400.1| hypothetical protein NRG857_14950 [Escherichia coli O83:H1 str. NRG
           857C]
 gi|315288752|gb|EFU48150.1| radical SAM domain protein [Escherichia coli MS 110-3]
 gi|315295049|gb|EFU54386.1| radical SAM domain protein [Escherichia coli MS 153-1]
 gi|320195163|gb|EFW69792.1| putative Fe-S oxidoreductase family 2 [Escherichia coli WV_060327]
 gi|323951464|gb|EGB47339.1| radical SAM domain-containing protein [Escherichia coli H252]
 gi|324005400|gb|EGB74619.1| radical SAM domain protein [Escherichia coli MS 57-2]
 gi|324011939|gb|EGB81158.1| radical SAM domain protein [Escherichia coli MS 60-1]
 gi|331078274|gb|EGI49480.1| Fe-S oxidoreductase [Escherichia coli H299]
          Length = 739

 Score = 58.4 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 48/297 (16%), Positives = 98/297 (32%), Gaps = 58/297 (19%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDN--GVCEIT--LLGQNVNA 234
           + I  GC   C+FC +    G  I SRS   +++E   + D   G   +   L G   N 
Sbjct: 380 VNIMRGCFGGCSFCSITEHEGRIIQSRSEDSIINEIEAIRDTVPGFTGVISDLGGPTANM 439

Query: 235 WR----------------------GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
           +                          +D       +L     ++KG+ ++   +    D
Sbjct: 440 YMLRCKSPRAEQTCRRLSCVYPDICPHMDTNHEPTINLYRRARDLKGIKKILIASGVRYD 499

Query: 273 MSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRRH--TAYEYRQIIDRI-RSVRP 327
           ++    +   +L    +  YL +  +   +  L  M +    +   ++++ D   +    
Sbjct: 500 IAVEDPRYIKELATHHVGGYLKIAPEHTEEGPLSKMMKPGMGSYDRFKELFDTYSKQAGK 559

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGY--AQAFSFKYSPRLGT---------PGS 376
           +  +   FI   PG  D+D       + K  +   Q  +F  SP   +         P +
Sbjct: 560 EQYLIPYFISAHPGTRDEDMVNLALWLKKHRFRLDQVQNFYPSPLANSTTMYYTGKNPLA 619

Query: 377 NMLEQ-----VDENVKAERL-LCLQK--------KLREQQVSF-NDACVGQIIEVLI 418
            +  +     V +  K  RL   L +         +R+   +      +G   + L+
Sbjct: 620 KIGYKSEDVFVPKGDKQRRLHKALLRYHDPANWPLIRQALEAMGKKHLIGSRRDCLV 676


>gi|332969440|gb|EGK08463.1| radical SAM protein [Psychrobacter sp. 1501(2011)]
          Length = 827

 Score = 58.4 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 42/264 (15%), Positives = 88/264 (33%), Gaps = 35/264 (13%)

Query: 151 DTDYSVEDKFERLSIVDGGYNR---KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRS 206
           + DY  +  + R+     G  R      +   + I  GC   CTFC +    G  I +RS
Sbjct: 419 EMDYVFDLPYARVPHPSYGDARIPAFDMIKFSVNIMRGCFGGCTFCSITEHEGRIIQNRS 478

Query: 207 LSQVVDEARKLIDNGVCEITLL----GQNVNAWRGKGLD--------------------- 241
              ++ E   + D       ++    G   N +R    D                     
Sbjct: 479 EESILREVEAIRDTAPNFTGVISDLGGPTANMYRLSCKDEAIEKNCRKPSCVYPDICENL 538

Query: 242 -GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL--DVLMPYLHLPVQSG 298
             +    + L     +IKG+ ++   +    D++    +   +L    +  YL +  +  
Sbjct: 539 LTDHSNLTKLYRKARDIKGVKKILIASGLRYDLAVKDPEYVKELVTHHVGGYLKIAPEHS 598

Query: 299 SDRILKSMNRRH--TAYEYRQIIDRI-RSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
              +L  M +    +  +++Q+ ++  +    +  +   FI   PG TD+D       + 
Sbjct: 599 EQNVLSKMMKPGMGSYDKFKQMFEQYSQEAGKEQYLIPYFIAAHPGTTDEDMMNLALWLK 658

Query: 356 KIGYAQAFSFKYSPRLGTPGSNML 379
           +  +       + P      + M 
Sbjct: 659 RNDFRTDQVQAFYPSPMATATTMY 682


>gi|194431790|ref|ZP_03064081.1| radical SAM domain protein [Shigella dysenteriae 1012]
 gi|194420146|gb|EDX36224.1| radical SAM domain protein [Shigella dysenteriae 1012]
          Length = 739

 Score = 58.4 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 48/297 (16%), Positives = 98/297 (32%), Gaps = 58/297 (19%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDN--GVCEIT--LLGQNVNA 234
           + I  GC   C+FC +    G  I SRS   +++E   + D   G   +   L G   N 
Sbjct: 380 VNIMRGCFGGCSFCSITEHEGRIIQSRSEDSIINEIEAIRDTVPGFTGVISDLGGPTANM 439

Query: 235 WR----------------------GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
           +                          +D       +L     ++KG+ ++   +    D
Sbjct: 440 YMLRCKSPRAEQTCRRLSCVYPDICPHMDTNHEPTINLYRRARDLKGIKKILIASGVRYD 499

Query: 273 MSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRRH--TAYEYRQIIDRI-RSVRP 327
           ++    +   +L    +  YL +  +   +  L  M +    +   ++++ D   +    
Sbjct: 500 IAVEDPRYIKELATHHVGGYLKIAPEHTEEGPLSKMMKPGMGSYDRFKELFDTYSKQAGK 559

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGY--AQAFSFKYSPRLGT---------PGS 376
           +  +   FI   PG  D+D       + K  +   Q  +F  SP   +         P +
Sbjct: 560 EQYLIPYFISAHPGTRDEDMVNLALWLKKHRFRLDQVQNFYPSPLANSTTMYYTGKNPLA 619

Query: 377 NMLEQ-----VDENVKAERL-LCLQK--------KLREQQVSF-NDACVGQIIEVLI 418
            +  +     V +  K  RL   L +         +R+   +      +G   + L+
Sbjct: 620 KIGYKSEDVFVPKGDKQRRLHKALLRYHDPANWPLIRQALEAMGKKHLIGSRRDCLV 676


>gi|323966546|gb|EGB61979.1| radical SAM domain-containing protein [Escherichia coli M863]
 gi|323978911|gb|EGB73991.1| radical SAM domain-containing protein [Escherichia coli TW10509]
 gi|327251800|gb|EGE63486.1| radical SAM superfamily protein [Escherichia coli STEC_7v]
          Length = 739

 Score = 58.4 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 48/297 (16%), Positives = 98/297 (32%), Gaps = 58/297 (19%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDN--GVCEIT--LLGQNVNA 234
           + I  GC   C+FC +    G  I SRS   +++E   + D   G   +   L G   N 
Sbjct: 380 VNIMRGCFGGCSFCSITEHEGRIIQSRSEDSIINEIEAIRDTVPGFTGVISDLGGPTANM 439

Query: 235 WR----------------------GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
           +                          +D       +L     ++KG+ ++   +    D
Sbjct: 440 YMLRCKSPRAEQTCRRLSCVYPDICPHMDTNHEPTINLYRRARDLKGIKKILIASGVRYD 499

Query: 273 MSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRRH--TAYEYRQIIDRI-RSVRP 327
           ++    +   +L    +  YL +  +   +  L  M +    +   ++++ D   +    
Sbjct: 500 IAVEDPRYIKELATHHVGGYLKIAPEHTEEGPLSKMMKPGMGSYDRFKELFDTYSKQAGK 559

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGY--AQAFSFKYSPRLGT---------PGS 376
           +  +   FI   PG  D+D       + K  +   Q  +F  SP   +         P +
Sbjct: 560 EQYLIPYFISAHPGTRDEDMVNLALWLKKHRFRLDQVQNFYPSPLANSTTMYYTGKNPLA 619

Query: 377 NMLEQ-----VDENVKAERL-LCLQK--------KLREQQVSF-NDACVGQIIEVLI 418
            +  +     V +  K  RL   L +         +R+   +      +G   + L+
Sbjct: 620 KIGYKSEDVFVPKGDKQRRLHKALLRYHDPANWPLIRQALEAMGKKHLIGSRRDCLV 676


>gi|320666920|gb|EFX33896.1| hypothetical protein ECOSU61_07312 [Escherichia coli O157:H7 str.
           LSU-61]
          Length = 739

 Score = 58.4 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 48/297 (16%), Positives = 98/297 (32%), Gaps = 58/297 (19%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDN--GVCEIT--LLGQNVNA 234
           + I  GC   C+FC +    G  I SRS   +++E   + D   G   +   L G   N 
Sbjct: 380 VNIMRGCFGGCSFCSITEHEGRIIQSRSEDSIINEIEAIRDTVPGFTGVISDLGGPTANM 439

Query: 235 WR----------------------GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
           +                          +D       +L     ++KG+ ++   +    D
Sbjct: 440 YMLRCKSPRAEQTCRRLSCVYPDICPHMDTNHEPTINLYRRARDLKGIKKILIASGVRYD 499

Query: 273 MSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRRH--TAYEYRQIIDRI-RSVRP 327
           ++    +   +L    +  YL +  +   +  L  M +    +   ++++ D   +    
Sbjct: 500 IAVEDPRYIKELATHHVGGYLKIAPEHTEEGPLSKMMKPGMGSYDRFKELFDTYSKQAGK 559

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGY--AQAFSFKYSPRLGT---------PGS 376
           +  +   FI   PG  D+D       + K  +   Q  +F  SP   +         P +
Sbjct: 560 EQYLIPYFISAHPGTRDEDMVNLALWLKKHRFRLDQVQNFYPSPLANSTTMYYTGKNPLA 619

Query: 377 NMLEQ-----VDENVKAERL-LCLQK--------KLREQQVSF-NDACVGQIIEVLI 418
            +  +     V +  K  RL   L +         +R+   +      +G   + L+
Sbjct: 620 KIGYKSEDVFVPKGDKQRRLHKALLRYHDPANWPLIRQALEAMGKKHLIGSRRDCLV 676


>gi|320180956|gb|EFW55877.1| putative Fe-S oxidoreductase family 2 [Shigella boydii ATCC 9905]
          Length = 739

 Score = 58.4 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 48/297 (16%), Positives = 98/297 (32%), Gaps = 58/297 (19%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDN--GVCEIT--LLGQNVNA 234
           + I  GC   C+FC +    G  I SRS   +++E   + D   G   +   L G   N 
Sbjct: 380 VNIMRGCFGGCSFCSITEHEGRIIQSRSEDSIINEIEAIRDTVPGFTGVISDLGGPTANM 439

Query: 235 WR----------------------GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
           +                          +D       +L     ++KG+ ++   +    D
Sbjct: 440 YMLRCKSPRAEQTCRRLSCVYPDICPHMDTNHEPTINLYRRARDLKGIKKILIASGVRYD 499

Query: 273 MSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRRH--TAYEYRQIIDRI-RSVRP 327
           ++    +   +L    +  YL +  +   +  L  M +    +   ++++ D   +    
Sbjct: 500 IAVEDPRYIKELATHHVGGYLKIAPEHTEEGPLSKMMKPGMGSYDRFKELFDTYSKQAGK 559

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGY--AQAFSFKYSPRLGT---------PGS 376
           +  +   FI   PG  D+D       + K  +   Q  +F  SP   +         P +
Sbjct: 560 EQYLIPYFISAHPGTRDEDMVNLALWLKKHRFRLDQVQNFYPSPLANSTTMYYTGKNPLA 619

Query: 377 NMLEQ-----VDENVKAERL-LCLQK--------KLREQQVSF-NDACVGQIIEVLI 418
            +  +     V +  K  RL   L +         +R+   +      +G   + L+
Sbjct: 620 KIGYKSEDVFVPKGDKQRRLHKALLRYHDPANWPLIRQALEAMGKKHLIGSRRDCLV 676


>gi|308271446|emb|CBX28054.1| hypothetical protein N47_G33780 [uncultured Desulfobacterium sp.]
          Length = 574

 Score = 58.4 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 78/220 (35%), Gaps = 37/220 (16%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
           + +  GC   C FC   +       R+LS +     K +D GV     +G          
Sbjct: 247 IEVSRGCPHGCRFCSAGFVYRPPRFRTLSSL----EKTLDKGVAIADRIG---------F 293

Query: 240 LDGEKCTFSDLLYS--LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQS 297
           +        +++    +++IKG   + +++     ++  L  A     +      +    
Sbjct: 294 IGAAISDLPEIIALCSMAQIKGAQ-ISFSSLRADALTGELAAALKKSGI--KTATIAPDG 350

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSV-RPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
           GS RI   +N+  T  +     + I     P+I +   F++G P ET +D    + L  K
Sbjct: 351 GSQRIRNVINKGITEDQILSATEIIVDAGIPNIKLY--FMIGLPTETMEDVEEIVILCKK 408

Query: 357 --------------IGYAQAFSFKYSPRLGTP--GSNMLE 380
                         IG+       + P+  TP   + M +
Sbjct: 409 IKKRFLDSSRKKQRIGHITISINPFIPKPFTPFQWAGMDD 448


>gi|301325636|ref|ZP_07219100.1| radical SAM domain protein [Escherichia coli MS 78-1]
 gi|300847554|gb|EFK75314.1| radical SAM domain protein [Escherichia coli MS 78-1]
          Length = 739

 Score = 58.4 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 48/297 (16%), Positives = 98/297 (32%), Gaps = 58/297 (19%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDN--GVCEIT--LLGQNVNA 234
           + I  GC   C+FC +    G  I SRS   +++E   + D   G   +   L G   N 
Sbjct: 380 VNIMRGCFGGCSFCSITEHEGRIIQSRSEDSIINEIEAIRDTVPGFTGVISDLGGPTANM 439

Query: 235 WR----------------------GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
           +                          +D       +L     ++KG+ ++   +    D
Sbjct: 440 YMLRCKSPRAEQTCRRLSCVYPDICPHMDTNHEPTINLYRRARDLKGIKKILIASGVRYD 499

Query: 273 MSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRRH--TAYEYRQIIDRI-RSVRP 327
           ++    +   +L    +  YL +  +   +  L  M +    +   ++++ D   +    
Sbjct: 500 IAVEDPRYIKELATHHVGGYLKIAPEHTEEGPLSKMMKPGMGSYDRFKELFDTYSKQAGK 559

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGY--AQAFSFKYSPRLGT---------PGS 376
           +  +   FI   PG  D+D       + K  +   Q  +F  SP   +         P +
Sbjct: 560 EQYLIPYFISAHPGTRDEDMVNLALWLKKHRFRLDQVQNFYPSPLANSTTMYYTGKNPLA 619

Query: 377 NMLEQ-----VDENVKAERL-LCLQK--------KLREQQVSF-NDACVGQIIEVLI 418
            +  +     V +  K  RL   L +         +R+   +      +G   + L+
Sbjct: 620 KIGYKSEDVFVPKGDKQRRLHKALLRYHDPANWPLIRQALEAMGKKHLIGSRRDCLV 676


>gi|260869773|ref|YP_003236175.1| hypothetical protein ECO111_3842 [Escherichia coli O111:H- str.
           11128]
 gi|257766129|dbj|BAI37624.1| conserved predicted protein [Escherichia coli O111:H- str. 11128]
 gi|323178723|gb|EFZ64299.1| radical SAM superfamily protein [Escherichia coli 1180]
          Length = 739

 Score = 58.4 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 48/297 (16%), Positives = 98/297 (32%), Gaps = 58/297 (19%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDN--GVCEIT--LLGQNVNA 234
           + I  GC   C+FC +    G  I SRS   +++E   + D   G   +   L G   N 
Sbjct: 380 VNIMRGCFGGCSFCSITEHEGRIIQSRSEDSIINEIEAIRDTVPGFTGVISDLGGPTANM 439

Query: 235 WR----------------------GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
           +                          +D       +L     ++KG+ ++   +    D
Sbjct: 440 YMLRCKSPRAEQTCRRLSCVYPDICPHMDTNHEPTINLYRRARDLKGIKKILIASGVRYD 499

Query: 273 MSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRRH--TAYEYRQIIDRI-RSVRP 327
           ++    +   +L    +  YL +  +   +  L  M +    +   ++++ D   +    
Sbjct: 500 IAVEDPRYIKELATHHVGGYLKIAPEHTEEGPLSKMMKPGMGSYDRFKELFDTYSKQAGK 559

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGY--AQAFSFKYSPRLGT---------PGS 376
           +  +   FI   PG  D+D       + K  +   Q  +F  SP   +         P +
Sbjct: 560 EQYLIPYFISAHPGTRDEDMVNLALWLKKHRFRLDQVQNFYPSPLANSTTMYYTGKNPLA 619

Query: 377 NMLEQ-----VDENVKAERL-LCLQK--------KLREQQVSF-NDACVGQIIEVLI 418
            +  +     V +  K  RL   L +         +R+   +      +G   + L+
Sbjct: 620 KIGYKSEDVFVPKGDKQRRLHKALLRYHDPANWPLIRQALEAMGKKHLIGSRRDCLV 676


>gi|254784873|ref|YP_003072301.1| radical SAM [Teredinibacter turnerae T7901]
 gi|237684670|gb|ACR11934.1| radical SAM [Teredinibacter turnerae T7901]
          Length = 724

 Score = 58.4 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 48/360 (13%), Positives = 110/360 (30%), Gaps = 48/360 (13%)

Query: 68  NTCHIR--EKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVN 125
           N+C     E AA+     + RI  +   + ++            +  +  +        +
Sbjct: 257 NSCSETSGEVAAQNEQGEVVRIVPMPLRKWEQNLATDATCIRLPSFEKVSKDPVLYAHAS 316

Query: 126 VVVGPQ-TYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGV-------- 176
            V+  +   +    L+++    +  V+         E   +    Y R            
Sbjct: 317 RVLHQESNPHNARTLVQKHGKREVWVNPPAIPLTTEEMDHVFGLSYARVPHPMYQGKKIP 376

Query: 177 -----TAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDN---------- 220
                   + I  GC   CTFC +    G  I SRS + ++ E  ++ D           
Sbjct: 377 AYDMIKTSVNIMRGCFGGCTFCSITEHEGRIIQSRSHASILREIEEIRDKVPGFTGTISD 436

Query: 221 ------GVCEITLLGQNVNAWR----------GKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
                  +  +     ++ A             K L+ +    ++L      ++G+  + 
Sbjct: 437 LGGPTSNMYTLNCKDPDIQASCRKLSCVYPGICKNLNTDHSPTTELYRKARRVEGVHTVA 496

Query: 265 YTTSHPRDMSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRRH--TAYEYRQIID 320
             +    D++    +   +L    +  YL +  +      L  M +    T   + ++  
Sbjct: 497 IASGLRYDLAVEDPEYVKELVTHHVGGYLKIAPEHSEQGTLSMMMKPGMGTYDRFEKMFY 556

Query: 321 RI-RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
           +  +       +   FI G PG +D+D       + +  +       + P   +  + M 
Sbjct: 557 QFSKEAGKKQYLIPYFIAGHPGCSDEDMVNLALWLKRHSFEVDQVQTFYPSPMSLATAMY 616


>gi|218550263|ref|YP_002384054.1| hypothetical protein EFER_2955 [Escherichia fergusonii ATCC 35469]
 gi|218357804|emb|CAQ90448.1| conserved hypothetical protein [Escherichia fergusonii ATCC 35469]
 gi|324114953|gb|EGC08918.1| radical SAM domain-containing protein [Escherichia fergusonii B253]
 gi|325498567|gb|EGC96426.1| hypothetical protein ECD227_2664 [Escherichia fergusonii ECD227]
          Length = 739

 Score = 58.4 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 48/297 (16%), Positives = 98/297 (32%), Gaps = 58/297 (19%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDN--GVCEIT--LLGQNVNA 234
           + I  GC   C+FC +    G  I SRS   +++E   + D   G   +   L G   N 
Sbjct: 380 VNIMRGCFGGCSFCSITEHEGRIIQSRSEDSIINEIEAIRDTVPGFTGVISDLGGPTANM 439

Query: 235 WR----------------------GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
           +                          +D       +L     ++KG+ ++   +    D
Sbjct: 440 YMLRCKSPRAEQTCRRLSCVYPDICPHMDTNHEPTINLYRRARDLKGIKKILIASGVRYD 499

Query: 273 MSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRRH--TAYEYRQIIDRI-RSVRP 327
           ++    +   +L    +  YL +  +   +  L  M +    +   ++++ D   +    
Sbjct: 500 IAVEDPRYIKELATHHVGGYLKIAPEHTEEGPLSKMMKPGMGSYDRFKELFDTYSKQAGK 559

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGY--AQAFSFKYSPRLGT---------PGS 376
           +  +   FI   PG  D+D       + K  +   Q  +F  SP   +         P +
Sbjct: 560 EQYLIPYFISAHPGTRDEDMVNLALWLKKHRFRLDQVQNFYPSPLANSTTMYYTGKNPLA 619

Query: 377 NMLEQ-----VDENVKAERL-LCLQK--------KLREQQVSF-NDACVGQIIEVLI 418
            +  +     V +  K  RL   L +         +R+   +      +G   + L+
Sbjct: 620 KIGYKSEDVFVPKGDKQRRLHKALLRYHDPANWPLIRQALEAMGKKHLIGSRRDCLV 676


>gi|167569703|ref|ZP_02362577.1| lipoyl synthase [Burkholderia oklahomensis C6786]
          Length = 329

 Score = 58.4 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 39/216 (18%), Positives = 71/216 (32%), Gaps = 17/216 (7%)

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEG-CDKFCTFCVVPYTRGIEISRSLSQVVD 212
           +SV ++    +I +    R     A   I  G C + C FC V    G        +   
Sbjct: 76  HSVCEEAMCPNIGECFAQRT----ATFMIMGGVCTRRCPFCDV--AHGRPAPLDPDEPER 129

Query: 213 EARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKGLVRLRYTTSHPR 271
            A  +   G+  + +   +    R    DG    F+  + ++ S + G+     T     
Sbjct: 130 LADAVAALGLRFVVITSVD----RDDLRDGGAAHFARCVAAVRSRVPGIGVEILTPDFRG 185

Query: 272 DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAI 331
                L         +  +    V S    + ++           +++   +  RP +  
Sbjct: 186 RAERALDALSAAWPDVFNHNVETVPS----LYRAARPGADYRGSLELLAAAKRARPSLVT 241

Query: 332 SSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
            S  +VG  GE DD+ R TM  +   G       +Y
Sbjct: 242 KSGLMVGL-GERDDELRDTMRDLRAHGVDVLTIGQY 276


>gi|152971951|ref|YP_001337060.1| hypothetical protein KPN_03434 [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|330008892|ref|ZP_08306324.1| uncharacterized radical SAM protein YgiQ [Klebsiella sp. MS 92-3]
 gi|150956800|gb|ABR78830.1| putative Fe-S oxidoreductase family 2 [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|328535039|gb|EGF61562.1| uncharacterized radical SAM protein YgiQ [Klebsiella sp. MS 92-3]
          Length = 696

 Score = 58.4 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 50/316 (15%), Positives = 98/316 (31%), Gaps = 58/316 (18%)

Query: 161 ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLID 219
              S  D        +   + I  GC   C+FC +    G  I SRS   +++E   + D
Sbjct: 330 PHPSYGDARIPAYEMIRFSINIMRGCFGGCSFCSITEHEGRIIQSRSEDSIINEIEAIRD 389

Query: 220 N--GVCEIT--LLGQNVNAWR----------------------GKGLDGEKCTFSDLLYS 253
              G   +   L G   N +                          +D       +L   
Sbjct: 390 TVPGFTGVISDLGGPTANMYMLRCKSPRAEQTCRRLSCVYPDICPHMDTNHEPTINLYRR 449

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRRH- 310
             E+KG+ ++   +    D++    +   +L    +  YL +  +   +  L  M +   
Sbjct: 450 ARELKGIKKILIASGVRYDIAVEDPRYIKELATHHVGGYLKIAPEHTEEGPLSKMMKPGM 509

Query: 311 -TAYEYRQIIDRI-RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY--AQAFSFK 366
            +   ++++ D   +    +  +   FI   PG  D+D       + K  +   Q  +F 
Sbjct: 510 GSYDRFKELFDTYSKQAGKEQYLIPYFISAHPGTRDEDMVNLALWLKKHRFRLDQVQNFY 569

Query: 367 YSPRLGTPGSNMLEQ--------------VDENVKAERL-LCLQK--------KLREQQV 403
            SP   +       +              V +  K  RL   L +         +R+   
Sbjct: 570 PSPLANSTTMYYTGKNPLGKIGYKSEEVVVPKGDKQRRLHKALLRYHDPANWPLIRQALE 629

Query: 404 SF-NDACVGQIIEVLI 418
           +      +G   + L+
Sbjct: 630 AMGKKHLIGSRRDCLV 645


>gi|82545277|ref|YP_409224.1| hypothetical protein SBO_2878 [Shigella boydii Sb227]
 gi|81246688|gb|ABB67396.1| Fe-S oxidoreductase [Shigella boydii Sb227]
 gi|320184195|gb|EFW59011.1| putative Fe-S oxidoreductase family 2 [Shigella flexneri CDC
           796-83]
 gi|332091980|gb|EGI97058.1| radical SAM superfamily protein [Shigella boydii 3594-74]
          Length = 739

 Score = 58.4 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 48/297 (16%), Positives = 98/297 (32%), Gaps = 58/297 (19%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDN--GVCEIT--LLGQNVNA 234
           + I  GC   C+FC +    G  I SRS   +++E   + D   G   +   L G   N 
Sbjct: 380 VNIMRGCFGGCSFCSITEHEGRIIQSRSEDSIINEIEAIRDTVPGFTGVISDLGGPTANM 439

Query: 235 WR----------------------GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
           +                          +D       +L     ++KG+ ++   +    D
Sbjct: 440 YMLRCKSPRAEQTCRRLSCVYPDICPHMDTNHEPTINLYRRARDLKGIKKILIASGVRYD 499

Query: 273 MSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRRH--TAYEYRQIIDRI-RSVRP 327
           ++    +   +L    +  YL +  +   +  L  M +    +   ++++ D   +    
Sbjct: 500 IAVEDPRYIKELATHHVGGYLKIAPEHTEEGPLSKMMKPGMGSYDRFKELFDTYSKQAGK 559

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGY--AQAFSFKYSPRLGT---------PGS 376
           +  +   FI   PG  D+D       + K  +   Q  +F  SP   +         P +
Sbjct: 560 EQYLIPYFISAHPGTRDEDMVNLALWLKKHRFRLDQVQNFYPSPLANSTTMYYTGKKPLA 619

Query: 377 NMLEQ-----VDENVKAERL-LCLQK--------KLREQQVSF-NDACVGQIIEVLI 418
            +  +     V +  K  RL   L +         +R+   +      +G   + L+
Sbjct: 620 KIGYKSEDVFVPKGDKQRRLHKALLRYHDPANWPLIRQALEAMGKKHLIGSRRDCLV 676


>gi|49176302|ref|YP_026196.1| conserved protein [Escherichia coli str. K-12 substr. MG1655]
 gi|89109786|ref|AP_003566.1| hypothetical protein [Escherichia coli str. K-12 substr. W3110]
 gi|157155004|ref|YP_001464481.1| hypothetical protein EcE24377A_3484 [Escherichia coli E24377A]
 gi|157162492|ref|YP_001459810.1| hypothetical protein EcHS_A3194 [Escherichia coli HS]
 gi|170018730|ref|YP_001723684.1| hypothetical protein EcolC_0681 [Escherichia coli ATCC 8739]
 gi|170082559|ref|YP_001731879.1| hypothetical protein ECDH10B_3190 [Escherichia coli str. K-12
           substr. DH10B]
 gi|191167564|ref|ZP_03029376.1| radical SAM domain protein [Escherichia coli B7A]
 gi|193062164|ref|ZP_03043260.1| radical SAM domain protein [Escherichia coli E22]
 gi|193067344|ref|ZP_03048312.1| radical SAM domain protein [Escherichia coli E110019]
 gi|194426294|ref|ZP_03058849.1| radical SAM domain protein [Escherichia coli B171]
 gi|194436774|ref|ZP_03068874.1| radical SAM domain protein [Escherichia coli 101-1]
 gi|209920490|ref|YP_002294574.1| hypothetical protein ECSE_3299 [Escherichia coli SE11]
 gi|218555588|ref|YP_002388501.1| hypothetical protein ECIAI1_3164 [Escherichia coli IAI1]
 gi|218696724|ref|YP_002404391.1| hypothetical protein EC55989_3432 [Escherichia coli 55989]
 gi|218706642|ref|YP_002414161.1| hypothetical protein ECUMN_3499 [Escherichia coli UMN026]
 gi|238902129|ref|YP_002927925.1| hypothetical protein BWG_2729 [Escherichia coli BW2952]
 gi|254038185|ref|ZP_04872243.1| radical SAM domain-containing protein [Escherichia sp. 1_1_43]
 gi|256019063|ref|ZP_05432928.1| hypothetical protein ShiD9_09112 [Shigella sp. D9]
 gi|256024402|ref|ZP_05438267.1| hypothetical protein E4_13589 [Escherichia sp. 4_1_40B]
 gi|260845773|ref|YP_003223551.1| hypothetical protein ECO103_3697 [Escherichia coli O103:H2 str.
           12009]
 gi|260857152|ref|YP_003231043.1| hypothetical protein ECO26_4120 [Escherichia coli O26:H11 str.
           11368]
 gi|293406632|ref|ZP_06650558.1| hypothetical protein ECGG_01938 [Escherichia coli FVEC1412]
 gi|293416458|ref|ZP_06659097.1| hypothetical protein ECDG_03214 [Escherichia coli B185]
 gi|298382371|ref|ZP_06991968.1| ygiQ protein [Escherichia coli FVEC1302]
 gi|300818780|ref|ZP_07098986.1| radical SAM domain protein [Escherichia coli MS 107-1]
 gi|300901395|ref|ZP_07119481.1| radical SAM domain protein [Escherichia coli MS 198-1]
 gi|300923675|ref|ZP_07139702.1| radical SAM domain protein [Escherichia coli MS 182-1]
 gi|300931902|ref|ZP_07147199.1| radical SAM domain protein [Escherichia coli MS 187-1]
 gi|300950776|ref|ZP_07164663.1| radical SAM domain protein [Escherichia coli MS 116-1]
 gi|300958400|ref|ZP_07170540.1| radical SAM domain protein [Escherichia coli MS 175-1]
 gi|301017289|ref|ZP_07182053.1| radical SAM domain protein [Escherichia coli MS 69-1]
 gi|301643616|ref|ZP_07243657.1| radical SAM domain protein [Escherichia coli MS 146-1]
 gi|307139705|ref|ZP_07499061.1| hypothetical protein EcolH7_16458 [Escherichia coli H736]
 gi|307310353|ref|ZP_07590001.1| Radical SAM domain protein [Escherichia coli W]
 gi|309793580|ref|ZP_07688006.1| radical SAM domain protein [Escherichia coli MS 145-7]
 gi|331643716|ref|ZP_08344847.1| Fe-S oxidoreductase [Escherichia coli H736]
 gi|331659295|ref|ZP_08360237.1| Fe-S oxidoreductase [Escherichia coli TA206]
 gi|331669963|ref|ZP_08370808.1| Fe-S oxidoreductase [Escherichia coli TA271]
 gi|331679089|ref|ZP_08379761.1| Fe-S oxidoreductase [Escherichia coli H591]
 gi|332280164|ref|ZP_08392577.1| radical SAM domain-containing protein [Shigella sp. D9]
 gi|55977859|sp|Q46861|YGIQ_ECOLI RecName: Full=UPF0313 protein ygiQ
 gi|48994917|gb|AAT48161.1| conserved protein [Escherichia coli str. K-12 substr. MG1655]
 gi|85675819|dbj|BAE77072.1| conserved hypothetical protein [Escherichia coli str. K12 substr.
           W3110]
 gi|157068172|gb|ABV07427.1| radical SAM domain protein [Escherichia coli HS]
 gi|157077034|gb|ABV16742.1| radical SAM domain protein [Escherichia coli E24377A]
 gi|169753658|gb|ACA76357.1| Radical SAM domain protein [Escherichia coli ATCC 8739]
 gi|169890394|gb|ACB04101.1| conserved protein [Escherichia coli str. K-12 substr. DH10B]
 gi|190902421|gb|EDV62158.1| radical SAM domain protein [Escherichia coli B7A]
 gi|192932384|gb|EDV84982.1| radical SAM domain protein [Escherichia coli E22]
 gi|192959301|gb|EDV89736.1| radical SAM domain protein [Escherichia coli E110019]
 gi|194415602|gb|EDX31869.1| radical SAM domain protein [Escherichia coli B171]
 gi|194424256|gb|EDX40243.1| radical SAM domain protein [Escherichia coli 101-1]
 gi|209913749|dbj|BAG78823.1| conserved hypothetical protein [Escherichia coli SE11]
 gi|218353456|emb|CAU99546.1| conserved hypothetical protein [Escherichia coli 55989]
 gi|218362356|emb|CAQ99979.1| conserved hypothetical protein [Escherichia coli IAI1]
 gi|218433739|emb|CAR14656.1| conserved hypothetical protein [Escherichia coli UMN026]
 gi|226839809|gb|EEH71830.1| radical SAM domain-containing protein [Escherichia sp. 1_1_43]
 gi|238860420|gb|ACR62418.1| conserved protein [Escherichia coli BW2952]
 gi|257755801|dbj|BAI27303.1| conserved predicted protein [Escherichia coli O26:H11 str. 11368]
 gi|257760920|dbj|BAI32417.1| conserved predicted protein [Escherichia coli O103:H2 str. 12009]
 gi|260447947|gb|ACX38369.1| Radical SAM domain protein [Escherichia coli DH1]
 gi|291426638|gb|EFE99670.1| hypothetical protein ECGG_01938 [Escherichia coli FVEC1412]
 gi|291431814|gb|EFF04797.1| hypothetical protein ECDG_03214 [Escherichia coli B185]
 gi|298277511|gb|EFI19027.1| ygiQ protein [Escherichia coli FVEC1302]
 gi|300314909|gb|EFJ64693.1| radical SAM domain protein [Escherichia coli MS 175-1]
 gi|300355167|gb|EFJ71037.1| radical SAM domain protein [Escherichia coli MS 198-1]
 gi|300400262|gb|EFJ83800.1| radical SAM domain protein [Escherichia coli MS 69-1]
 gi|300420042|gb|EFK03353.1| radical SAM domain protein [Escherichia coli MS 182-1]
 gi|300449946|gb|EFK13566.1| radical SAM domain protein [Escherichia coli MS 116-1]
 gi|300460325|gb|EFK23818.1| radical SAM domain protein [Escherichia coli MS 187-1]
 gi|300528565|gb|EFK49627.1| radical SAM domain protein [Escherichia coli MS 107-1]
 gi|301015219|gb|ADK47408.1| YgiQ [Escherichia coli]
 gi|301078000|gb|EFK92806.1| radical SAM domain protein [Escherichia coli MS 146-1]
 gi|306909248|gb|EFN39743.1| Radical SAM domain protein [Escherichia coli W]
 gi|308122537|gb|EFO59799.1| radical SAM domain protein [Escherichia coli MS 145-7]
 gi|315062330|gb|ADT76657.1| conserved hypothetical protein [Escherichia coli W]
 gi|315137610|dbj|BAJ44769.1| hypothetical protein ECDH1ME8569_2913 [Escherichia coli DH1]
 gi|315297733|gb|EFU57010.1| radical SAM domain protein [Escherichia coli MS 16-3]
 gi|315615021|gb|EFU95659.1| radical SAM superfamily protein [Escherichia coli 3431]
 gi|320201931|gb|EFW76506.1| hypothetical protein ECoL_00556 [Escherichia coli EC4100B]
 gi|323154715|gb|EFZ40914.1| radical SAM superfamily protein [Escherichia coli EPECa14]
 gi|323183603|gb|EFZ69000.1| radical SAM superfamily protein [Escherichia coli 1357]
 gi|323377084|gb|ADX49352.1| Radical SAM domain protein [Escherichia coli KO11]
 gi|323935982|gb|EGB32277.1| radical SAM domain-containing protein [Escherichia coli E1520]
 gi|323941885|gb|EGB38064.1| radical SAM domain-containing protein [Escherichia coli E482]
 gi|323946739|gb|EGB42759.1| radical SAM domain-containing protein [Escherichia coli H120]
 gi|323960936|gb|EGB56555.1| radical SAM domain-containing protein [Escherichia coli H489]
 gi|323971858|gb|EGB67083.1| radical SAM domain-containing protein [Escherichia coli TA007]
 gi|324018140|gb|EGB87359.1| radical SAM domain protein [Escherichia coli MS 117-3]
 gi|331037187|gb|EGI09411.1| Fe-S oxidoreductase [Escherichia coli H736]
 gi|331053877|gb|EGI25906.1| Fe-S oxidoreductase [Escherichia coli TA206]
 gi|331062876|gb|EGI34790.1| Fe-S oxidoreductase [Escherichia coli TA271]
 gi|331073154|gb|EGI44477.1| Fe-S oxidoreductase [Escherichia coli H591]
 gi|332102516|gb|EGJ05862.1| radical SAM domain-containing protein [Shigella sp. D9]
 gi|332344973|gb|AEE58307.1| radical SAM superfamily protein [Escherichia coli UMNK88]
          Length = 739

 Score = 58.4 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 48/297 (16%), Positives = 98/297 (32%), Gaps = 58/297 (19%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDN--GVCEIT--LLGQNVNA 234
           + I  GC   C+FC +    G  I SRS   +++E   + D   G   +   L G   N 
Sbjct: 380 VNIMRGCFGGCSFCSITEHEGRIIQSRSEDSIINEIEAIRDTVPGFTGVISDLGGPTANM 439

Query: 235 WR----------------------GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
           +                          +D       +L     ++KG+ ++   +    D
Sbjct: 440 YMLRCKSPRAEQTCRRLSCVYPDICPHMDTNHEPTINLYRRARDLKGIKKILIASGVRYD 499

Query: 273 MSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRRH--TAYEYRQIIDRI-RSVRP 327
           ++    +   +L    +  YL +  +   +  L  M +    +   ++++ D   +    
Sbjct: 500 IAVEDPRYIKELATHHVGGYLKIAPEHTEEGPLSKMMKPGMGSYDRFKELFDTYSKQAGK 559

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGY--AQAFSFKYSPRLGT---------PGS 376
           +  +   FI   PG  D+D       + K  +   Q  +F  SP   +         P +
Sbjct: 560 EQYLIPYFISAHPGTRDEDMVNLALWLKKHRFRLDQVQNFYPSPLANSTTMYYTGKNPLA 619

Query: 377 NMLEQ-----VDENVKAERL-LCLQK--------KLREQQVSF-NDACVGQIIEVLI 418
            +  +     V +  K  RL   L +         +R+   +      +G   + L+
Sbjct: 620 KIGYKSEDVFVPKGDKQRRLHKALLRYHDPANWPLIRQALEAMGKKHLIGSRRDCLV 676


>gi|317125272|ref|YP_004099384.1| coproporphyrinogen III oxidase anaerobic [Intrasporangium calvum
           DSM 43043]
 gi|315589360|gb|ADU48657.1| coproporphyrinogen III oxidase, anaerobic [Intrasporangium calvum
           DSM 43043]
          Length = 414

 Score = 58.4 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/116 (23%), Positives = 49/116 (42%), Gaps = 10/116 (8%)

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
           + L +QS    +L ++ R H      + ++ +R+V   + +S D I G PGE+  D+R +
Sbjct: 156 VSLGMQSAVPHVLATLERTHDPDNVARAVEAVRAV--GMQVSLDLIYGTPGESLADWRRS 213

Query: 351 MDLVDKIGYAQAFSFKYSPRLGTPGSN--------MLEQVDENVKAERLLCLQKKL 398
           ++    +G     ++      GT  +         M E  DE  K E    L  + 
Sbjct: 214 LEAAVAMGPDHVSAYALVVEDGTKLAGQVRRGQVPMPEDDDEADKYELADELLTRA 269


>gi|330808469|ref|YP_004352931.1| coproporphyrinogen dehydrogenase (oxygen-independent
           coproporphyrinogen III oxidase) [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
 gi|327376577|gb|AEA67927.1| Coproporphyrinogen dehydrogenase (oxygen-independent
           coproporphyrinogen III oxidase) [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 460

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 46/266 (17%), Positives = 92/266 (34%), Gaps = 25/266 (9%)

Query: 159 KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC----VVPYTRGIEISR--SLSQVVD 212
            F+ L  +       R ++ +L I   C   C +C    V+   RG   +    L Q + 
Sbjct: 37  TFDLLHALRDSRKALRPLSLYLHIPF-CANICYYCACNKVITKDRGRAHAYLQRLEQEIQ 95

Query: 213 EARKLID--NGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270
                +D    V ++   G          L          L  L +  G   +       
Sbjct: 96  LIGCHLDPTQRVEQLHFGGGTPTFLSHDELRQLMAKLRQHLNLLDDDSGDYGIEIDPREA 155

Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330
              +  L++  G        + + +Q     + +++NR  +  E R +++  R+++   +
Sbjct: 156 DWSTMGLLRELG-----FNRVSIGLQDLDPAVQRAVNRLQSLEETRAVVEAARTLQFR-S 209

Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV-----DEN 385
           I+ D I G P +T ++F  T+  V  +   +   F Y+          + Q      D  
Sbjct: 210 INIDLIYGLPKQTPENFARTVQEVIHLQPDRLSVFNYAHLP----ERFMPQRRINSQDLP 265

Query: 386 VKAERLLCLQKKLREQQVSFNDACVG 411
              ++L  LQ  + +   +     VG
Sbjct: 266 TPEQKLAMLQGTIEQLTAAGY-RYVG 290


>gi|291284396|ref|YP_003501214.1| hypothetical protein G2583_3739 [Escherichia coli O55:H7 str.
           CB9615]
 gi|209759634|gb|ACI78129.1| hypothetical protein ECs3900 [Escherichia coli]
 gi|290764269|gb|ADD58230.1| UPF0313 protein ygiQ [Escherichia coli O55:H7 str. CB9615]
 gi|320661768|gb|EFX29176.1| hypothetical protein ECO5905_11863 [Escherichia coli O55:H7 str.
           USDA 5905]
          Length = 739

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 48/297 (16%), Positives = 98/297 (32%), Gaps = 58/297 (19%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDN--GVCEIT--LLGQNVNA 234
           + I  GC   C+FC +    G  I SRS   +++E   + D   G   +   L G   N 
Sbjct: 380 VNIMRGCFGGCSFCSITEHEGRIIQSRSEDSIINEIEAIRDTVPGFTGVISDLGGPTANM 439

Query: 235 WR----------------------GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
           +                          +D       +L     ++KG+ ++   +    D
Sbjct: 440 YMLRCKSPRAEQTCRRLSCVYPDICPHMDTNHEPTINLYRRARDLKGIKKILIASGVRYD 499

Query: 273 MSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRRH--TAYEYRQIIDRI-RSVRP 327
           ++    +   +L    +  YL +  +   +  L  M +    +   ++++ D   +    
Sbjct: 500 IAVEDPRYIKELATHHVGGYLKIAPEHTEEGPLSKMMKPGMGSYDRFKELFDTYSKQAGK 559

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGY--AQAFSFKYSPRLGT---------PGS 376
           +  +   FI   PG  D+D       + K  +   Q  +F  SP   +         P +
Sbjct: 560 EQYLIPYFISAHPGTRDEDMVNLALWLKKHRFRLDQVQNFYPSPLANSTTMYYTGKNPLA 619

Query: 377 NMLEQ-----VDENVKAERL-LCLQK--------KLREQQVSF-NDACVGQIIEVLI 418
            +  +     V +  K  RL   L +         +R+   +      +G   + L+
Sbjct: 620 KIGYKSEDVFVPKGDKQRRLHKALLRYHDLANWPLIRQALEAMGKKHLIGSRRDCLV 676


>gi|15833154|ref|NP_311927.1| hypothetical protein ECs3900 [Escherichia coli O157:H7 str. Sakai]
 gi|168747477|ref|ZP_02772499.1| radical SAM domain protein [Escherichia coli O157:H7 str. EC4113]
 gi|168753983|ref|ZP_02778990.1| radical SAM domain protein [Escherichia coli O157:H7 str. EC4401]
 gi|168760174|ref|ZP_02785181.1| radical SAM domain protein [Escherichia coli O157:H7 str. EC4501]
 gi|168767036|ref|ZP_02792043.1| radical SAM domain protein [Escherichia coli O157:H7 str. EC4486]
 gi|168773330|ref|ZP_02798337.1| radical SAM domain protein [Escherichia coli O157:H7 str. EC4196]
 gi|168781889|ref|ZP_02806896.1| radical SAM domain protein [Escherichia coli O157:H7 str. EC4076]
 gi|168785887|ref|ZP_02810894.1| radical SAM domain protein [Escherichia coli O157:H7 str. EC869]
 gi|168797605|ref|ZP_02822612.1| radical SAM domain protein [Escherichia coli O157:H7 str. EC508]
 gi|195937160|ref|ZP_03082542.1| hypothetical protein EscherichcoliO157_12026 [Escherichia coli
           O157:H7 str. EC4024]
 gi|208808650|ref|ZP_03250987.1| radical SAM domain protein [Escherichia coli O157:H7 str. EC4206]
 gi|208813605|ref|ZP_03254934.1| radical SAM domain protein [Escherichia coli O157:H7 str. EC4045]
 gi|208820840|ref|ZP_03261160.1| radical SAM domain protein [Escherichia coli O157:H7 str. EC4042]
 gi|209399855|ref|YP_002272492.1| radical SAM domain protein [Escherichia coli O157:H7 str. EC4115]
 gi|217327478|ref|ZP_03443561.1| radical SAM domain protein [Escherichia coli O157:H7 str. TW14588]
 gi|254794970|ref|YP_003079807.1| hypothetical protein ECSP_3992 [Escherichia coli O157:H7 str.
           TW14359]
 gi|261228030|ref|ZP_05942311.1| hypothetical protein EscherichiacoliO157_25991 [Escherichia coli
           O157:H7 str. FRIK2000]
 gi|261254886|ref|ZP_05947419.1| hypothetical protein EscherichiacoliO157EcO_03566 [Escherichia coli
           O157:H7 str. FRIK966]
 gi|331654623|ref|ZP_08355623.1| Fe-S oxidoreductase [Escherichia coli M718]
 gi|47606305|sp|Q8XBS7|YGIQ_ECO57 RecName: Full=UPF0313 protein ygiQ
 gi|13363372|dbj|BAB37323.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
 gi|187770891|gb|EDU34735.1| radical SAM domain protein [Escherichia coli O157:H7 str. EC4196]
 gi|188017964|gb|EDU56086.1| radical SAM domain protein [Escherichia coli O157:H7 str. EC4113]
 gi|189000563|gb|EDU69549.1| radical SAM domain protein [Escherichia coli O157:H7 str. EC4076]
 gi|189358472|gb|EDU76891.1| radical SAM domain protein [Escherichia coli O157:H7 str. EC4401]
 gi|189363747|gb|EDU82166.1| radical SAM domain protein [Escherichia coli O157:H7 str. EC4486]
 gi|189369236|gb|EDU87652.1| radical SAM domain protein [Escherichia coli O157:H7 str. EC4501]
 gi|189374010|gb|EDU92426.1| radical SAM domain protein [Escherichia coli O157:H7 str. EC869]
 gi|189379768|gb|EDU98184.1| radical SAM domain protein [Escherichia coli O157:H7 str. EC508]
 gi|208728451|gb|EDZ78052.1| radical SAM domain protein [Escherichia coli O157:H7 str. EC4206]
 gi|208734882|gb|EDZ83569.1| radical SAM domain protein [Escherichia coli O157:H7 str. EC4045]
 gi|208740963|gb|EDZ88645.1| radical SAM domain protein [Escherichia coli O157:H7 str. EC4042]
 gi|209161255|gb|ACI38688.1| radical SAM domain protein [Escherichia coli O157:H7 str. EC4115]
 gi|209759628|gb|ACI78126.1| hypothetical protein ECs3900 [Escherichia coli]
 gi|209759630|gb|ACI78127.1| hypothetical protein ECs3900 [Escherichia coli]
 gi|209759632|gb|ACI78128.1| hypothetical protein ECs3900 [Escherichia coli]
 gi|209759636|gb|ACI78130.1| hypothetical protein ECs3900 [Escherichia coli]
 gi|217319845|gb|EEC28270.1| radical SAM domain protein [Escherichia coli O157:H7 str. TW14588]
 gi|254594370|gb|ACT73731.1| conserved protein [Escherichia coli O157:H7 str. TW14359]
 gi|320189369|gb|EFW64028.1| putative Fe-S oxidoreductase family 2 [Escherichia coli O157:H7
           str. EC1212]
 gi|320640092|gb|EFX09664.1| hypothetical protein ECO5101_09031 [Escherichia coli O157:H7 str.
           G5101]
 gi|320645389|gb|EFX14398.1| hypothetical protein ECO9389_07177 [Escherichia coli O157:H- str.
           493-89]
 gi|320650701|gb|EFX19158.1| hypothetical protein ECO2687_13429 [Escherichia coli O157:H- str. H
           2687]
 gi|320656396|gb|EFX24303.1| hypothetical protein ECO7815_07354 [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|326337723|gb|EGD61557.1| putative Fe-S oxidoreductase family 2 [Escherichia coli O157:H7
           str. 1125]
 gi|326347287|gb|EGD71012.1| putative Fe-S oxidoreductase family 2 [Escherichia coli O157:H7
           str. 1044]
 gi|331048005|gb|EGI20082.1| Fe-S oxidoreductase [Escherichia coli M718]
          Length = 739

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 48/297 (16%), Positives = 98/297 (32%), Gaps = 58/297 (19%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDN--GVCEIT--LLGQNVNA 234
           + I  GC   C+FC +    G  I SRS   +++E   + D   G   +   L G   N 
Sbjct: 380 VNIMRGCFGGCSFCSITEHEGRIIQSRSEDSIINEIEAIRDTVPGFTGVISDLGGPTANM 439

Query: 235 WR----------------------GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
           +                          +D       +L     ++KG+ ++   +    D
Sbjct: 440 YMLRCKSPRAEQTCRRLSCVYPDICPHMDTNHEPTINLYRRARDLKGIKKILIASGVRYD 499

Query: 273 MSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRRH--TAYEYRQIIDRI-RSVRP 327
           ++    +   +L    +  YL +  +   +  L  M +    +   ++++ D   +    
Sbjct: 500 IAVEDPRYIKELATHHVGGYLKIAPEHTEEGPLSKMMKPGMGSYDRFKELFDTYSKQAGK 559

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGY--AQAFSFKYSPRLGT---------PGS 376
           +  +   FI   PG  D+D       + K  +   Q  +F  SP   +         P +
Sbjct: 560 EQYLIPYFISAHPGTRDEDMVNLALWLKKHRFRLDQVQNFYPSPLANSTTMYYTGKNPLA 619

Query: 377 NMLEQ-----VDENVKAERL-LCLQK--------KLREQQVSF-NDACVGQIIEVLI 418
            +  +     V +  K  RL   L +         +R+   +      +G   + L+
Sbjct: 620 KIGYKSEDVFVPKGDKQRRLHKALLRYHDPANWPLIRQALEAMGKKHLIGSRRDCLV 676


>gi|256544543|ref|ZP_05471916.1| radical SAM domain protein [Anaerococcus vaginalis ATCC 51170]
 gi|256399868|gb|EEU13472.1| radical SAM domain protein [Anaerococcus vaginalis ATCC 51170]
          Length = 344

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 36/210 (17%), Positives = 70/210 (33%), Gaps = 20/210 (9%)

Query: 174 RGVTAFLTIQEGCDKFCTFCVVPYTRGI-EISR-SLSQVVDEARKLIDNGVCEITLLGQN 231
           RG+  F      C   C +C +  +    E  R S  +++  A+     G     L G  
Sbjct: 46  RGLIEFTNF---CKNDCYYCGIRKSNSNIERYRLSFDEILMCAKIGYKLGYRTFVLQG-- 100

Query: 232 VNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDC-LIKAHGDLDVLMPY 290
                G+ L  +      ++  + +I     +  +       S     +A  D  +L   
Sbjct: 101 -----GEDLSYKDEDICKIVEEIKKIHPDCAITLSIGERSKKSYKKFFEAGADRFLLREE 155

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
                 S  D   K   +  +    R+ +  ++ +     +   F+V  P +TD+D  + 
Sbjct: 156 S-----SSKDHYYKIHPKEMSFENRRKALFDLKEI--GFQVGGGFMVDSPYQTDEDLISD 208

Query: 351 MDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           +  + K+         Y  +  TP  NM  
Sbjct: 209 LRFLQKLKPDMIGIGPYLSQHDTPFKNMKN 238


>gi|167562518|ref|ZP_02355434.1| lipoyl synthase [Burkholderia oklahomensis EO147]
          Length = 329

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 39/216 (18%), Positives = 71/216 (32%), Gaps = 17/216 (7%)

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEG-CDKFCTFCVVPYTRGIEISRSLSQVVD 212
           +SV ++    +I +    R     A   I  G C + C FC V    G        +   
Sbjct: 76  HSVCEEAMCPNIGECFAQRT----ATFMIMGGVCTRRCPFCDV--AHGRPAPLDPDEPER 129

Query: 213 EARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKGLVRLRYTTSHPR 271
            A  +   G+  + +   +    R    DG    F+  + ++ S + G+     T     
Sbjct: 130 LADAVAALGLRFVVITSVD----RDDLRDGGAAHFARCVAAVRSRVPGIGVEILTPDFRG 185

Query: 272 DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAI 331
                L         +  +    V S    + ++           +++   +  RP +  
Sbjct: 186 RAERALDALSAAWPDVFNHNVETVPS----LYRAARPGADYRGSLELLAAAKRARPSLVT 241

Query: 332 SSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
            S  +VG  GE DD+ R TM  +   G       +Y
Sbjct: 242 KSGLMVGL-GERDDELRDTMRDLRAHGVDVLTIGQY 276


>gi|331674562|ref|ZP_08375322.1| Fe-S oxidoreductase [Escherichia coli TA280]
 gi|331068656|gb|EGI40051.1| Fe-S oxidoreductase [Escherichia coli TA280]
          Length = 739

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 48/297 (16%), Positives = 98/297 (32%), Gaps = 58/297 (19%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDN--GVCEIT--LLGQNVNA 234
           + I  GC   C+FC +    G  I SRS   +++E   + D   G   +   L G   N 
Sbjct: 380 VNIMRGCFGGCSFCSITEHEGRIIQSRSEDSIINEIEAIRDTVPGFTGVISDLGGPTANM 439

Query: 235 WR----------------------GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
           +                          +D       +L     ++KG+ ++   +    D
Sbjct: 440 YMLRCKSPRAEQTCRRLSCVYPDICPHMDTNHEPTINLYRRARDLKGIKKILIASGVRYD 499

Query: 273 MSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRRH--TAYEYRQIIDRI-RSVRP 327
           ++    +   +L    +  YL +  +   +  L  M +    +   ++++ D   +    
Sbjct: 500 IAVEDPRYIKELATHHVGGYLKIAPEHTEEGPLSKMMKPGMGSYDRFKELFDTYSKQAGK 559

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGY--AQAFSFKYSPRLGT---------PGS 376
           +  +   FI   PG  D+D       + K  +   Q  +F  SP   +         P +
Sbjct: 560 EQYLIPYFISAHPGTRDEDMVNLALWLKKHRFRLDQVQNFYPSPLANSTTMYYTGKNPLA 619

Query: 377 NMLEQ-----VDENVKAERL-LCLQK--------KLREQQVSF-NDACVGQIIEVLI 418
            +  +     V +  K  RL   L +         +R+   +      +G   + L+
Sbjct: 620 KIGYKSEDVFVPKGDKQRRLHKALLRYHDPANWPLIRQALEAMGKKHLIGSRRDCLV 676


>gi|222053838|ref|YP_002536200.1| radical SAM protein [Geobacter sp. FRC-32]
 gi|221563127|gb|ACM19099.1| Radical SAM domain protein [Geobacter sp. FRC-32]
          Length = 497

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 55/338 (16%), Positives = 111/338 (32%), Gaps = 38/338 (11%)

Query: 54  ERVN-SMDDADLIVLNTCHI-REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQ 111
           E  +  +  ADL+ ++   I RE A     + + R RNL    +  G   +         
Sbjct: 57  ELTDRDIKWADLVFISAMSIQRESAE----TVISRCRNLGVKTVAGGPLFI--------- 103

Query: 112 AEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG-KRVVDTDYSVEDKFERLSIVDGGY 170
                   +   V+ +V  +    L   L+    G    +  D    D  +    +    
Sbjct: 104 ----AFHDQFSQVDHLVLGEAEITLQRFLDDLEMGVPGHIYQDERRADLADTPVPLWELA 159

Query: 171 NRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVC-EITLL 228
           + ++     +    GC   C FC +    G +  ++  +Q++ E   L   G    I  +
Sbjct: 160 DLRKYAGMNIQYSRGCPFDCEFCDITGLFGRKPRTKQTAQLLVELESLYSRGWRGSIFFV 219

Query: 229 GQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLM 288
             N    + K               L  I+G +  R    +    +   +   G+L  +M
Sbjct: 220 DDNFIGDKQK----------LKREILPAIRGWMEKRNHPFYFYTEASIDLADDGELMRMM 269

Query: 289 -----PYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGET 343
                  + + +++    +L  + +         ++   R  +  + +   FIVGF  + 
Sbjct: 270 VEAGFQEVFIGIETPHGEVLTEIGKVQNKNRDL-LVSVKRIQQAGLQVHGGFIVGFDSDP 328

Query: 344 DDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
              F + +  + + G A A     +   GT     L Q
Sbjct: 329 PTIFDSQIRFIQESGIATAMVGILTALRGTRLYQRLRQ 366


>gi|253990642|ref|YP_003041998.1| lipoyl synthase [Photorhabdus asymbiotica subsp. asymbiotica ATCC
           43949]
 gi|253782092|emb|CAQ85256.1| lipoyl synthase [Photorhabdus asymbiotica]
          Length = 321

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 32/183 (17%), Positives = 69/183 (37%), Gaps = 12/183 (6%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V    G  ++   ++ V  A+ + D  +  + +   +    R    DG   
Sbjct: 94  CTRRCPFCDV--AHGRPMAPDANEPVKLAQTIKDMALRYVVITSVD----RDDLRDGGAQ 147

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAH-GDLDVLMPYLHLPVQSGSDRILK 304
            F+D + ++ E    +++       R   D  ++        +  +    V     RI +
Sbjct: 148 HFADCISAIREKNPSIKIETLVPDFRGRMDRALEILTATPPDVFNHNLENV----PRIYR 203

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
            +          +++++ +   PDI   S  +VG  GET+++    M  + + G      
Sbjct: 204 QVRPGANYEWSLKLLEKFKEAHPDIPTKSGLMVGL-GETNEEILDVMRDLRRHGVTMLTL 262

Query: 365 FKY 367
            +Y
Sbjct: 263 GQY 265


>gi|219855627|ref|YP_002472749.1| hypothetical protein CKR_2284 [Clostridium kluyveri NBRC 12016]
 gi|219569351|dbj|BAH07335.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 505

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 44/328 (13%), Positives = 100/328 (30%), Gaps = 25/328 (7%)

Query: 57  NSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEE 116
           + +  AD + ++   I+    E     + R + L    +                     
Sbjct: 73  DDIKWADFVFISAMVIQ---KESARDLINRCKKLGVKTVAGEPLFT-------------S 116

Query: 117 ILRRSPIVNVVVGPQTYYRLPELLERARFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRG 175
             +    V+ +V  +    +PE L        + + T     D  +  + +    +    
Sbjct: 117 EYQDFDDVDYLVLGEGELTIPEFLHDLDNNCLKHMYTTNEWADLSQTPAPLWNLIDMSNY 176

Query: 176 VTAFLTIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVC-EITLLGQNVN 233
            T  +    GC   C FC +    G    ++ +  ++ E   + + G    I  +  N  
Sbjct: 177 ATLNIQYSRGCPFNCEFCDITTLFGRIPRTKPVKHLISELDAIYEMGWKGSIFFVDDNF- 235

Query: 234 AWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHL 293
              G     ++     L+  L +           S      D L+     +      + +
Sbjct: 236 --IGNRKKLKEEVLPALIEWLEQRDYPFSFLTEASINLSDDDELMNLM--VRAGFKTVFI 291

Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
            +++ S+  L   N+        +   + +  R  + +   FI+GF  +    F+  +  
Sbjct: 292 GIETVSEESLTECNKVQNKNRNLEECVK-KIQRNGLQVQGGFIIGFDSDNKTIFKKMIRF 350

Query: 354 VDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +   G   A     +   GT     L++
Sbjct: 351 IQDTGIVTAMVGLLNAPRGTLLYKRLKK 378


>gi|157123026|ref|XP_001659989.1| lipoic acid synthetase [Aedes aegypti]
 gi|122094084|sp|Q16W22|LIAS_AEDAE RecName: Full=Lipoyl synthase, mitochondrial; AltName: Full=Lipoate
           synthase; Short=LS; Short=Lip-syn; AltName: Full=Lipoic
           acid synthase; Flags: Precursor
 gi|108874549|gb|EAT38774.1| lipoic acid synthetase [Aedes aegypti]
          Length = 393

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/185 (14%), Positives = 59/185 (31%), Gaps = 13/185 (7%)

Query: 186 CDKFCTFCVVPYTR--GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
           C + C FC V   R          ++  + A  +   G+  I L   +    R    DG 
Sbjct: 142 CTRGCRFCSVKTARVPPPL---DPAEPTNTASAIASWGLDYIVLTSVD----RDDLPDGG 194

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
               +  +  +      + +       R      +K      + +   ++         +
Sbjct: 195 SNHIAATIREIKRQNPRIFVECLAPDFRG-DLECVKVVAQSGLDVYAHNIETVEALTPFV 253

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           +    R+       ++  I+ + P +   +  ++G  GETD+    TM  +  +G     
Sbjct: 254 RDRRARYRQS--LDVLRSIKEINPSMITKTSIMLGL-GETDEQIEQTMKDLRSVGVDCLT 310

Query: 364 SFKYS 368
             +Y 
Sbjct: 311 LGQYM 315


>gi|313618589|gb|EFR90561.1| radical SAM protein, family [Listeria innocua FSL S4-378]
          Length = 321

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 37/195 (18%), Positives = 70/195 (35%), Gaps = 19/195 (9%)

Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDE--ARKLIDNGVCEITLLG-----QNVNAWRGKGL 240
             CTFC    +     +R+L   V     R  +     +   +       N +A   +  
Sbjct: 52  GGCTFCSAAGSGDFAGNRALDLKVQFQQVRDKMQTKWKDGKCIAYFQAFTNTHAPVAE-- 109

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL-DVLMPYLHLPVQSGS 299
                   +   ++    G+V L    + P  + D +++   +L +    ++ L +QS  
Sbjct: 110 ------LREKFETVLNEPGVVGLSI-ATRPDCLPDDVVEYLAELNERTYLWIELGLQSAH 162

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
           D   + +NR H    Y + + +++    +I I +  I G P ET +    T   V + G 
Sbjct: 163 DETGRLINRAHDYDCYLEGVRKLQK--HNIRICTHIINGLPKETPEMMMETAQKVVESGV 220

Query: 360 AQAFSFKYSPRLGTP 374
                       GTP
Sbjct: 221 DGIKIHLLHLLKGTP 235


>gi|257792983|ref|YP_003186382.1| Radical SAM domain protein [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|257479675|gb|ACV59993.1| Radical SAM domain protein [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 423

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 45/326 (13%), Positives = 106/326 (32%), Gaps = 48/326 (14%)

Query: 81  YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILR-----------RSPIVNV--- 126
           +  +     L     K      V   G  A    +++               P++N+   
Sbjct: 60  FDSIQPAIALSKEIRKINPRTHVTFFGQHATIHAQKLASTYGDSCIRGDWEYPLINLARY 119

Query: 127 VVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLT----- 181
           ++G  +      L + A+ GK         + +    SI+       +     +      
Sbjct: 120 LMGNNSELVGVLLADDAKKGKSTPVYIGRNDLRVPARSILPPLDKYPQPHVERIMGSKQV 179

Query: 182 -----IQEGCDKFCTFCVV-PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW 235
                I  GC   C +C V     G  +      V+++A+ L++ G+  ++ +  +    
Sbjct: 180 VGATEIARGCHHKCLYCSVFAAYNGKVVLIPEDIVLEDAKNLVEQGMTHLSFIDADFFNA 239

Query: 236 RGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL-MPYLHLP 294
           +  G+         ++  L E      L Y  +   D          ++  L + ++   
Sbjct: 240 KWHGIK--------IIRKLHE--KYPFLTYDFTTRVDHILENRDTFREMVNLGVKFVTSA 289

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           ++  S+ +L  + ++ T  + R+ I  +R +   + ++  FI+  P    +D       +
Sbjct: 290 LEFPSEELLDEVEKQITVNDIREAIKFLREI--GMKLNPTFIMFNPWTRLEDLIEFRAFI 347

Query: 355 DKIGY----------AQAFSFKYSPR 370
           +               +   +K SP 
Sbjct: 348 EDNNLQDLIDPVQYQTRLHLYKGSPL 373


>gi|225019244|ref|ZP_03708436.1| hypothetical protein CLOSTMETH_03197 [Clostridium methylpentosum
           DSM 5476]
 gi|224947875|gb|EEG29084.1| hypothetical protein CLOSTMETH_03197 [Clostridium methylpentosum
           DSM 5476]
          Length = 339

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 36/199 (18%), Positives = 69/199 (34%), Gaps = 12/199 (6%)

Query: 185 GCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEI--TLLGQNVNAWRGKGLDG 242
           GC   C+FC      G ++           R+     V ++        +  + G     
Sbjct: 14  GCPHQCSFCNQRAISGTQLQPDA----AFVRRTCSQAVRQLGERCSDAELAFFGGSFTAI 69

Query: 243 EKCTFSDLLYSLSEIKGLVRL--RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300
           E+    +LL +  E  G   L     ++ P  +S  +++   +    +  + L VQS  +
Sbjct: 70  ERSYMLELLGAAQEFVGEGGLSGIRVSTRPDAISPEILELLKEH--CVTAIELGVQSLDN 127

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
           R+L    R HTA +  Q    IR      ++    +VG  G++ +    T   +  +   
Sbjct: 128 RVLALNKRGHTAQDAEQAARLIR--LYGFSLGLQMMVGLYGDSKESLYHTARQIVALSPD 185

Query: 361 QAFSFKYSPRLGTPGSNML 379
               +      GT    + 
Sbjct: 186 TVRIYPTVVLRGTALEALY 204


>gi|154685441|ref|YP_001420602.1| coproporphyrinogen III oxidase [Bacillus amyloliquefaciens FZB42]
 gi|154351292|gb|ABS73371.1| HemZ [Bacillus amyloliquefaciens FZB42]
          Length = 500

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 42/251 (16%), Positives = 91/251 (36%), Gaps = 21/251 (8%)

Query: 129 GPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
           G        +L +        ++    + D+  +L+ V   Y  K  V+ ++ I   C  
Sbjct: 127 GLTKEEAHADLKKDYLIHDEKINLMQEIVDR--QLAAVPDLYRVKDEVSIYIGIPF-CPT 183

Query: 189 FCTFCVVPYTR-----GIEIS------RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG 237
            C +C  P        G   S        + ++ +  ++  D  V  I   G    +   
Sbjct: 184 KCAYCTFPAYAIQGQAGRVGSFLWGLHYEMQKIGEWLKRH-DIKVTTIYFGGGTPTSITA 242

Query: 238 KGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQS 297
           + +D     + +++ S  ++  +  +      P  +++  +       +    + +  QS
Sbjct: 243 EEMDL---LYEEMVRSFPDVANIREITVEAGRPDTITEEKLAVLNKYKI--DRISINPQS 297

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
             +  LK++ R HT  E  +     R    +  I+ D I+G PGE   +FR +++  +K+
Sbjct: 298 YENETLKAIGRHHTVEETIEKYHLSRKHGMN-NINMDLIIGLPGEGTAEFRHSLEETEKL 356

Query: 358 GYAQAFSFKYS 368
                     S
Sbjct: 357 MPESLTVHTLS 367


>gi|300855378|ref|YP_003780362.1| putative Fe-S oxidoreductase [Clostridium ljungdahlii DSM 13528]
 gi|300435493|gb|ADK15260.1| putative Fe-S oxidoreductase [Clostridium ljungdahlii DSM 13528]
          Length = 570

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 31/211 (14%), Positives = 70/211 (33%), Gaps = 11/211 (5%)

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           +  + V+  +        ++       +  +    +     GC   C +C+         
Sbjct: 154 KQNENVILNEQREPMDMNKIVFPYTKEDNLKNKIVYYEASRGCPFKCKYCL-SSASFEVR 212

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
             ++ +V  E + L+D  +  I  + +  N               ++   +      V  
Sbjct: 213 FLNIERVKKELKFLMDKDIKLIKFVDRTFNCNYEFA--------MEIWKFVINADTDVTF 264

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
            +  S      +  IK           L + VQ+ +D +L ++NR          + +++
Sbjct: 265 HFEISADVLKDEE-IKLLNTAPKGRIQLEVGVQTTNDTVLNNINRYVKFNYIYDRVKKVQ 323

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
               +I    D I G PGE  + F+ + + V
Sbjct: 324 KY-HNINQHLDLIAGLPGEDFESFKKSFNDV 353


>gi|296268533|ref|YP_003651165.1| Coproporphyrinogen dehydrogenase [Thermobispora bispora DSM 43833]
 gi|296091320|gb|ADG87272.1| Coproporphyrinogen dehydrogenase [Thermobispora bispora DSM 43833]
          Length = 404

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 42/210 (20%), Positives = 76/210 (36%), Gaps = 12/210 (5%)

Query: 173 KRGVTAFLTIQEGCDKFCTFC----VVPYTRGIEISRSLSQV--VDEARKLIDNGVCEIT 226
            R +  ++ I   C+  C FC     +P        ++  ++  +D  R  I      + 
Sbjct: 2   TRPLLLYVNIPF-CNSKCHFCDWVVQIPVRDLRLDQQAPGRIAYLDAVRAQIRGQAPVLR 60

Query: 227 LLGQNVNAWRGKGLD--GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL 284
              Q    + G G      +     L   L     L  +R TT      S    K     
Sbjct: 61  EHYQPAIIYWGGGTASILGESEIESLYTCLRSEFDLSHVRETTIEGSPESLTPQKLRRLR 120

Query: 285 DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA-ISSDFIVGFPGET 343
           ++    + + VQS  D+ L+ + R H+A +  +++    +       I+ D IVGFPG+T
Sbjct: 121 ELGFDRISIGVQSFDDQRLRRLGRAHSAEQAVEVVKNAHAA--GFRNINIDLIVGFPGQT 178

Query: 344 DDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
           D +   ++     +       + Y    GT
Sbjct: 179 DAEVAESVRTALTLPINHFSIYPYRASPGT 208


>gi|74318171|ref|YP_315911.1| Elongator protein 3/MiaB/NifB [Thiobacillus denitrificans ATCC
           25259]
 gi|74057666|gb|AAZ98106.1| Elongator protein 3/MiaB/NifB [Thiobacillus denitrificans ATCC
           25259]
          Length = 763

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 45/284 (15%), Positives = 83/284 (29%), Gaps = 46/284 (16%)

Query: 161 ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLID 219
              S  D        +   + I  GC   CTFC +    G  I SRS   V+ E   + D
Sbjct: 363 PHPSYGDAKIPAWEMIRFSINIMRGCFGGCTFCSITEHEGRIIQSRSEDSVIREIEAIRD 422

Query: 220 N--GVCEIT--LLGQNVNAWR----------------------GKGLDGEKCTFSDLLYS 253
              G   +   L G   N +R                       + +  +      +   
Sbjct: 423 KTPGFTGVISDLGGPTANMYRMACKSKQIEQSCRRLSCVFPDICENMTTDHTPLIQMYRR 482

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRRHT 311
              + G+ +++ ++    D++    +   +L    +  YL +  +      L  M +   
Sbjct: 483 ARAVPGIKKIQISSGLRYDLAVRSPEYVKELVQHHVGGYLKIAPEHTEAGPLSKMMKPGM 542

Query: 312 A--YEYRQIIDRIRSVRPDIA-ISSDFIVGFPGETDDDFRATMDLVDKIGY--AQAFSFK 366
                ++ + +           +   FI   PG TD+D       + K  +   Q  +F 
Sbjct: 543 GAYERFKDMFEAASKAVGKKQYLIPYFIAAHPGTTDEDMLNLALWLKKHDFRLDQVQTFL 602

Query: 367 YSPRLGTPGSNMLEQVDEN------------VKAERLLCLQKKL 398
            +P          E+                V+  R   L K  
Sbjct: 603 PTPMALATAMYHTEKNPLKKVLGGKAETVPVVRQGRTRRLHKAF 646


>gi|15603795|ref|NP_246869.1| lipoyl synthase [Pasteurella multocida subsp. multocida str. Pm70]
 gi|13431630|sp|P57978|LIPA_PASMU RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|12722365|gb|AAK04014.1| LipA [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 320

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/214 (14%), Positives = 70/214 (32%), Gaps = 10/214 (4%)

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           + +    E  S  +       G   F+ +   C + C FC V    G  +     +    
Sbjct: 61  HGLHSVCEEASCPNLHECFNHGTATFMILGAICTRRCPFCDV--AHGKPLPPDPEEPRKL 118

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
           A  + D  +  + +   +    R    D     F++ +  + ++   +++       R  
Sbjct: 119 AETIQDMKLRYVVITSVD----RDDLPDRGAGHFAECVKEIRQLNPNIKIEILVPDFRGR 174

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
            +  +    D     P +         R+ + +          +++   +++ P I   S
Sbjct: 175 IEQALDKLKDNP---PDVFNHNLENVPRLYREIRPGADYQWSLKLLKDFKAMFPHIPTKS 231

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
             +VG  GET+++    M  +   G       +Y
Sbjct: 232 GLMVGL-GETNEEILQVMQDLRDHGVTMLTLGQY 264


>gi|320157397|ref|YP_004189776.1| putative Fe-S oxidoreductase [Vibrio vulnificus MO6-24/O]
 gi|319932709|gb|ADV87573.1| predicted Fe-S oxidoreductase [Vibrio vulnificus MO6-24/O]
          Length = 318

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 33/134 (24%), Positives = 55/134 (41%), Gaps = 13/134 (9%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +L L +Q+ S+  LK +NR H    Y +I  R R++   I + +  IVG P E+ +D   
Sbjct: 141 WLELGLQTASNDTLKRINRGHDFECYAEITQRARAL--GIKVCTHLIVGLPKESRNDNFT 198

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDAC 409
           T++ V ++G             G+  +          KA R   L     EQ V      
Sbjct: 199 TLEKVIEVGTDGIKLHGLHIVEGSTMA----------KAWRAGKLDAPELEQYVEIACEM 248

Query: 410 VGQI-IEVLIEKHG 422
           + +   EV+  +  
Sbjct: 249 IRRTPPEVIFHRVS 262


>gi|309703447|emb|CBJ02787.1| radical SAM superfamily protein [Escherichia coli ETEC H10407]
          Length = 739

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 48/297 (16%), Positives = 98/297 (32%), Gaps = 58/297 (19%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDN--GVCEIT--LLGQNVNA 234
           + I  GC   C+FC +    G  I SRS   +++E   + D   G   +   L G   N 
Sbjct: 380 VNIMRGCFGGCSFCSITEHEGRIIQSRSEDSIINEIEAIRDTVPGFTGVISDLGGPTANM 439

Query: 235 WR----------------------GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
           +                          +D       +L     ++KG+ ++   +    D
Sbjct: 440 YMLRCKSPRAEQTCRRLSCVYPDICPHMDTNHEPTINLYRRARDLKGIKKILIASGVRYD 499

Query: 273 MSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRRH--TAYEYRQIIDRI-RSVRP 327
           ++    +   +L    +  YL +  +   +  L  M +    +   ++++ D   +    
Sbjct: 500 IAVEDPRYIKELATHHVGGYLKIAPEHTEEGPLSKMMKPGMGSYDRFKELFDTYSKQAGK 559

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGY--AQAFSFKYSPRLGT---------PGS 376
           +  +   FI   PG  D+D       + K  +   Q  +F  SP   +         P +
Sbjct: 560 EQYLIPYFISAHPGTRDEDMVNLALWLKKHRFRLDQVQNFYPSPLANSTTMYYTGKKPLA 619

Query: 377 NMLEQ-----VDENVKAERL-LCLQK--------KLREQQVSF-NDACVGQIIEVLI 418
            +  +     V +  K  RL   L +         +R+   +      +G   + L+
Sbjct: 620 KIGYKSEDVFVPKGDKQRRLHKALLRYHDPANWPLIRQALEAMGKKHLIGSRRDCLV 676


>gi|289548092|ref|YP_003473080.1| radical SAM protein [Thermocrinis albus DSM 14484]
 gi|289181709|gb|ADC88953.1| Radical SAM domain protein [Thermocrinis albus DSM 14484]
          Length = 371

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 53/270 (19%), Positives = 94/270 (34%), Gaps = 43/270 (15%)

Query: 185 GCDKFCTFCVVPYTRGIEISR-----------SLSQVVDEARKLIDNGVCEITLLGQNVN 233
           GC   C +C +   R +E S+            L  +++ ++K+   G  E   + Q  +
Sbjct: 54  GCHATCAYCGLQKARDVEYSKKNFIRVEWPTVKLEDIIERSKKV---GHVERLCIAQITH 110

Query: 234 AWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHL 293
                         SD  Y L  +   +  +   S   + +    +   D   L      
Sbjct: 111 ----------PRAISDTKYVLERVVKELGDQIFVSLLINATGTTYQDMLDYKKLGADTVT 160

Query: 294 PVQSGSDRIL------KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDF 347
                +   L      + MN  H    + ++++    V  D       +VG  GET+ + 
Sbjct: 161 VALDCATPQLFEKLRGRPMNSPHRWETFWKVLEWAVDVMGDGYAGCHLVVGL-GETEQEM 219

Query: 348 RATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD------ENVKAERLLCLQKKLREQ 401
             T+  V  +G A+   F + P  G   S M ++          V+  R L      R +
Sbjct: 220 VETIQRVRDLG-ARTHLFSFWPEEG---SMMEKEPPCPAPQYRRVQFARYLIDNGMARYE 275

Query: 402 QVSFNDACVGQIIEVLIEKHGKEKGKLVGR 431
            + FN+   GQI++  I K   E+    GR
Sbjct: 276 DMKFNEK--GQIVDFGIPKETFEEIFWSGR 303


>gi|256830366|ref|YP_003159094.1| Radical SAM domain-containing protein [Desulfomicrobium baculatum
           DSM 4028]
 gi|256579542|gb|ACU90678.1| Radical SAM domain protein [Desulfomicrobium baculatum DSM 4028]
          Length = 553

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 64/179 (35%), Gaps = 17/179 (9%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
           L +  GC   C FC             +  + +   + +   V    L+G  +  W    
Sbjct: 219 LEVNRGCPYGCRFCAAGSIYKPPRHAEMETLQNIVTRCVPQKVG---LVGTALTDW---- 271

Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
                      L  L E K  V+   ++     ++D L+            + L ++  S
Sbjct: 272 -----PDLLPFLRWLQERK--VKFSLSSLRADGLTDELLGFLRHTGT--RSVTLALEGAS 322

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
            R+ ++MN+  +   + + + RI  ++    +    I G+P E ++D+      + +I 
Sbjct: 323 RRLRQAMNKHFSEEAFLEAVTRISRLQFG-TLKLYMITGWPDENEEDWAEFESFLGRIE 380


>gi|16800838|ref|NP_471106.1| hypothetical protein lin1770 [Listeria innocua Clip11262]
 gi|16414257|emb|CAC97001.1| lin1770 [Listeria innocua Clip11262]
          Length = 321

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 38/195 (19%), Positives = 70/195 (35%), Gaps = 19/195 (9%)

Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDE--ARKLIDNGVCEITLLG-----QNVNAWRGKGL 240
             CTFC    +     +R+L   V     R  +     +   +       N +A   +  
Sbjct: 52  GGCTFCSAAGSGDFAGNRALDLKVQFQQVRDKMQTKWKDGKCIAYFQAFTNTHAPVAE-- 109

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL-DVLMPYLHLPVQSGS 299
                   +   ++    G+V L    + P  + D +++   +L +    +L L +QS  
Sbjct: 110 ------LREKFETVLNEPGVVGLSI-ATRPDCLPDDVVEYLAELNERTYLWLELGLQSAH 162

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
           D   + +NR H    Y + + +++    +I I +  I G P ET +    T   V + G 
Sbjct: 163 DETGRLINRAHDYDCYLEGVRKLQK--HNIRICTHIINGLPKETPEMMMETAQKVVESGV 220

Query: 360 AQAFSFKYSPRLGTP 374
                       GTP
Sbjct: 221 DGIKIHLLHLLKGTP 235


>gi|313632955|gb|EFR99885.1| radical SAM protein, family [Listeria seeligeri FSL N1-067]
          Length = 321

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 38/195 (19%), Positives = 71/195 (36%), Gaps = 19/195 (9%)

Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDE--ARKLIDNGVCEITLLG-----QNVNAWRGKGL 240
             CTFC    +     +R+L   V     R  +     +   +       N +A   +  
Sbjct: 52  GGCTFCSAAGSGDFAGNRALDLKVQFQQVRDKMQTKWKDGKCIAYFQAFTNTHAPVAE-- 109

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL-DVLMPYLHLPVQSGS 299
                   +   ++    G+V L    + P  + D +++   +L +    +L L +QS  
Sbjct: 110 ------LREKFETVLNEPGVVGLSI-ATRPDCLPDDVVEYLAELNERTYLWLELGLQSAH 162

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
           D   + +NR H    Y + + ++++   +I I +  I G P ET +    T   V + G 
Sbjct: 163 DETGRLINRAHDYDCYLEGVKKLQA--HNIRICTHIINGLPKETPEMMMETTQKVVESGV 220

Query: 360 AQAFSFKYSPRLGTP 374
                       GTP
Sbjct: 221 DGIKIHLLHLLKGTP 235


>gi|124516536|gb|EAY58044.1| Cobalamin B12-binding/Radical SAM family protein [Leptospirillum
           rubarum]
          Length = 517

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 42/275 (15%), Positives = 92/275 (33%), Gaps = 24/275 (8%)

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE-ISRS 206
           R ++    ++   + L      +       A +    GC   C+FC      G    +RS
Sbjct: 158 RFIENLDDIQPARDLLRHRRKYFIGVLDPCASIEFARGCPWDCSFCSAWTFYGRSYRTRS 217

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
             +++++  ++ + G+     +  +V   + K          ++   + +    +R  Y 
Sbjct: 218 PQRILEDLERIREPGI----FIVDDVAFVQEK-------HGYEIGEGILKRG--IRKEYY 264

Query: 267 TSHPRDMSDCLIKAHGDLDVL-MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
                D+             L M Y+ L V++     L    +R +  +  + ++  RS+
Sbjct: 265 LETRGDVLLRNKDLFRFWKKLGMKYMFLGVEAIDAEGLALHRKRISLGKNFEALEFARSL 324

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
              I ++ + I   P    + F A      +I          +P  GT      E     
Sbjct: 325 --GITVAINLIAD-PSWDRERFEAIRQWCLEIP-EIVNISVNTPYPGTESWR-TESRSIQ 379

Query: 386 VKAERLLCLQKKLREQQ---VSFNDACVGQIIEVL 417
            +  RL  +Q  +   +     F    V +  ++L
Sbjct: 380 TRDYRLFDIQHAVLPTKMPLAEFYGELV-KTQQIL 413


>gi|293412392|ref|ZP_06655115.1| conserved hypothetical protein [Escherichia coli B354]
 gi|331664629|ref|ZP_08365535.1| Fe-S oxidoreductase [Escherichia coli TA143]
 gi|291469163|gb|EFF11654.1| conserved hypothetical protein [Escherichia coli B354]
 gi|331058560|gb|EGI30541.1| Fe-S oxidoreductase [Escherichia coli TA143]
          Length = 739

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 48/297 (16%), Positives = 98/297 (32%), Gaps = 58/297 (19%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDN--GVCEIT--LLGQNVNA 234
           + I  GC   C+FC +    G  I SRS   +++E   + D   G   +   L G   N 
Sbjct: 380 VNIMRGCFGGCSFCSITEHEGRIIQSRSEDSIINEIEAIRDTVPGFTGVISDLGGPTANM 439

Query: 235 WR----------------------GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
           +                          +D       +L     ++KG+ ++   +    D
Sbjct: 440 YMLRCKSPRAEQTCRRLSCVYPDICPHMDTNHEPTINLYRRARDLKGIKKILIASGVRYD 499

Query: 273 MSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRRH--TAYEYRQIIDRI-RSVRP 327
           ++    +   +L    +  YL +  +   +  L  M +    +   ++++ D   +    
Sbjct: 500 IAVEDPRYIKELATHHVGGYLKIAPEHTEEGPLSKMMKPGMGSYDRFKELFDTYSKQAGK 559

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGY--AQAFSFKYSPRLGT---------PGS 376
           +  +   FI   PG  D+D       + K  +   Q  +F  SP   +         P +
Sbjct: 560 EQYLIPYFISAHPGTRDEDMVNLALWLKKHRFRLDQVQNFYPSPLANSTTMYYTGKNPLA 619

Query: 377 NMLEQ-----VDENVKAERL-LCLQK--------KLREQQVSF-NDACVGQIIEVLI 418
            +  +     V +  K  RL   L +         +R+   +      +G   + L+
Sbjct: 620 KIGYKSEDVFVPKGDKQRRLHKALLRYHDPANWPLIRQALEAMGKKHLIGSRRDCLV 676


>gi|289434948|ref|YP_003464820.1| radical SAM domain protein [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|289171192|emb|CBH27734.1| radical SAM domain protein [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|313637569|gb|EFS02979.1| radical SAM protein, family [Listeria seeligeri FSL S4-171]
          Length = 321

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 38/195 (19%), Positives = 71/195 (36%), Gaps = 19/195 (9%)

Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDE--ARKLIDNGVCEITLLG-----QNVNAWRGKGL 240
             CTFC    +     +R+L   V     R  +     +   +       N +A   +  
Sbjct: 52  GGCTFCSAAGSGDFAGNRALDLKVQFQQVRDKMQTKWKDGKCIAYFQAFTNTHAPVAE-- 109

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL-DVLMPYLHLPVQSGS 299
                   +   ++    G+V L    + P  + D +++   +L +    +L L +QS  
Sbjct: 110 ------LREKFETVLNEPGVVGLSI-ATRPDCLPDDVVEYLAELNERTYLWLELGLQSAH 162

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
           D   + +NR H    Y + + ++++   +I I +  I G P ET +    T   V + G 
Sbjct: 163 DETGRLINRAHDYDCYLEGVKKLQA--HNIRICTHIINGLPKETPEMMMETTQKVVESGV 220

Query: 360 AQAFSFKYSPRLGTP 374
                       GTP
Sbjct: 221 DGIKIHLLHLLKGTP 235


>gi|323483787|ref|ZP_08089166.1| oxygen-independent coproporphyrinogen III oxidase [Clostridium
           symbiosum WAL-14163]
 gi|323402872|gb|EGA95191.1| oxygen-independent coproporphyrinogen III oxidase [Clostridium
           symbiosum WAL-14163]
          Length = 408

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 39/227 (17%), Positives = 78/227 (34%), Gaps = 34/227 (14%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD---- 241
           C K C +C        E++R         +K ++  + EI   G  +    G+  D    
Sbjct: 30  CVKKCLYCDFLSFAADEVTR---------KKYVEQLIKEIETCGTRIT---GRDADAAFP 77

Query: 242 ------GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY----- 290
                 G     S     +  +   V+  +      +++        D   L  Y     
Sbjct: 78  VISVFIGGGTPSSLCPEQICAVMNAVKENFRLLPDAEITIEANPGTLDNKKLRAYKNSGI 137

Query: 291 --LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFR 348
             L L +QS +   L+ + R H+  E+ +     R    D  I+ D +   PG++ + + 
Sbjct: 138 NRLSLGLQSANPGELRELGRIHSWNEFLESYRLAREAGFD-NINVDLMSALPGQSFESYA 196

Query: 349 ATMDLVDKIGYAQAFSFKYSPRLGTPGSNML----EQVDENVKAERL 391
            T++ V  +      ++      GTP  +      E + +  +  R+
Sbjct: 197 DTLECVALLEPEHISAYSLIIEEGTPFYDKYSGRAEVLPDEEEDRRM 243


>gi|323163070|gb|EFZ48903.1| radical SAM superfamily protein [Escherichia coli E128010]
          Length = 739

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 48/297 (16%), Positives = 98/297 (32%), Gaps = 58/297 (19%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDN--GVCEIT--LLGQNVNA 234
           + I  GC   C+FC +    G  I SRS   +++E   + D   G   +   L G   N 
Sbjct: 380 VNIMRGCFGGCSFCSITEHEGRIIQSRSEDSIINEIEAIRDTVPGFTGVISDLGGPTANM 439

Query: 235 WR----------------------GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
           +                          +D       +L     ++KG+ ++   +    D
Sbjct: 440 YMLRCKSPRAEQTCRRLSCVYPDICPHMDTNHEPTINLYRRARDLKGIKKILIASGVRYD 499

Query: 273 MSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRRH--TAYEYRQIIDRI-RSVRP 327
           ++    +   +L    +  YL +  +   +  L  M +    +   ++++ D   +    
Sbjct: 500 IAVEDPRYIKELATHHVGGYLKIAPEHTEEGPLSKMMKPGMGSYDRFKELFDTYSKQAGK 559

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGY--AQAFSFKYSPRLGT---------PGS 376
           +  +   FI   PG  D+D       + K  +   Q  +F  SP   +         P +
Sbjct: 560 EQYLIPYFISAHPGTRDEDMVNLALWLKKHRFRLDQVQNFYPSPLANSTTMYYTGKNPLA 619

Query: 377 NMLEQ-----VDENVKAERL-LCLQK--------KLREQQVSF-NDACVGQIIEVLI 418
            +  +     V +  K  RL   L +         +R+   +      +G   + L+
Sbjct: 620 KIGYKSEDVFVPKGDKQRRLHKALLRYHDPANWPLIRQALEAMGKKHLIGSRRDCLV 676


>gi|300905856|ref|ZP_07123589.1| radical SAM domain protein [Escherichia coli MS 84-1]
 gi|301301954|ref|ZP_07208088.1| radical SAM domain protein [Escherichia coli MS 124-1]
 gi|300402325|gb|EFJ85863.1| radical SAM domain protein [Escherichia coli MS 84-1]
 gi|300842935|gb|EFK70695.1| radical SAM domain protein [Escherichia coli MS 124-1]
 gi|315256916|gb|EFU36884.1| radical SAM domain protein [Escherichia coli MS 85-1]
          Length = 739

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 48/297 (16%), Positives = 98/297 (32%), Gaps = 58/297 (19%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDN--GVCEIT--LLGQNVNA 234
           + I  GC   C+FC +    G  I SRS   +++E   + D   G   +   L G   N 
Sbjct: 380 VNIMRGCFGGCSFCSITEHEGRIIQSRSEDSIINEIEAIRDTVPGFTGVISDLGGPTANM 439

Query: 235 WR----------------------GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
           +                          +D       +L     ++KG+ ++   +    D
Sbjct: 440 YMLRCKSPRAEQTCRRLSCVYPDICPHMDTNHEPTINLYRRARDLKGIKKILIASGVRYD 499

Query: 273 MSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRRH--TAYEYRQIIDRI-RSVRP 327
           ++    +   +L    +  YL +  +   +  L  M +    +   ++++ D   +    
Sbjct: 500 IAVEDPRYIKELATHHVGGYLKIAPEHTEEGPLSKMMKPGMGSYDRFKELFDTYSKQAGK 559

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGY--AQAFSFKYSPRLGT---------PGS 376
           +  +   FI   PG  D+D       + K  +   Q  +F  SP   +         P +
Sbjct: 560 EQYLIPYFISAHPGTRDEDMVNLALWLKKHRFRLDQVQNFYPSPLANSTTMYYTGKNPLA 619

Query: 377 NMLEQ-----VDENVKAERL-LCLQK--------KLREQQVSF-NDACVGQIIEVLI 418
            +  +     V +  K  RL   L +         +R+   +      +G   + L+
Sbjct: 620 KIGYKSEDVFVPKGDKQRRLHKALLRYHDPANWPLIRQALEAMGKKHLIGSRRDCLV 676


>gi|301019995|ref|ZP_07184127.1| radical SAM domain protein [Escherichia coli MS 196-1]
 gi|299881952|gb|EFI90163.1| radical SAM domain protein [Escherichia coli MS 196-1]
          Length = 739

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 48/297 (16%), Positives = 98/297 (32%), Gaps = 58/297 (19%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDN--GVCEIT--LLGQNVNA 234
           + I  GC   C+FC +    G  I SRS   +++E   + D   G   +   L G   N 
Sbjct: 380 VNIMRGCFGGCSFCSITEHEGRIIQSRSEDSIINEIEAIRDTVPGFTGVISDLGGPTANM 439

Query: 235 WR----------------------GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
           +                          +D       +L     ++KG+ ++   +    D
Sbjct: 440 YMLRCKSPRAEQTCRRLSCVYPDICPHMDTNHEPTINLYRRARDLKGIKKILIASGVRYD 499

Query: 273 MSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRRH--TAYEYRQIIDRI-RSVRP 327
           ++    +   +L    +  YL +  +   +  L  M +    +   ++++ D   +    
Sbjct: 500 IAVEDPRYIKELATHHVGGYLKIAPEHTEEGPLSKMMKPGMGSYDRFKELFDTYSKQAGK 559

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGY--AQAFSFKYSPRLGT---------PGS 376
           +  +   FI   PG  D+D       + K  +   Q  +F  SP   +         P +
Sbjct: 560 EQYLIPYFISAHPGTRDEDMVNLALWLKKHRFRLDQVQNFYPSPLANSTTMYYTGKNPLA 619

Query: 377 NMLEQ-----VDENVKAERL-LCLQK--------KLREQQVSF-NDACVGQIIEVLI 418
            +  +     V +  K  RL   L +         +R+   +      +G   + L+
Sbjct: 620 KIGYKSEDVFVPKGDKQRRLHKALLRYHDPANWPLIRQALEAMGKKHLIGSRRDCLV 676


>gi|297160530|gb|ADI10242.1| putative radical SAM protein [Streptomyces bingchenggensis BCW-1]
          Length = 641

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 72/418 (17%), Positives = 127/418 (30%), Gaps = 72/418 (17%)

Query: 52  GYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVV----VAG 107
           G+   N    AD I    C +     + V      +R  K      G D ++       G
Sbjct: 150 GHAAFNPEPIADFI---DCAVIGDGEQAVLEMTEIVRAWKAEGRPGGRDEVLFRLARTGG 206

Query: 108 CVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVD 167
                  +        ++ VV  ++                V+D D     K   + + +
Sbjct: 207 VYVPRFYDVEYLPDGRISRVVPNRSGVPWR------VSKHTVMDLDEWPYPKQPLVPLAE 260

Query: 168 GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEIT 226
             + R       + I  GC + C FC           RS++ + +   K +   G  E+ 
Sbjct: 261 TVHERMS-----VEIFRGCTRGCRFCQAGMITRPVRERSITGIGEMVDKGLKATGFEEVG 315

Query: 227 LLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV 286
           LL     +       G+        Y   +I     L   ++     +  L         
Sbjct: 316 LLS---LSSADHTEIGDIAKGLADRYEEDKIG----LSLPSTRVDAFNIDLANELTRNGR 368

Query: 287 LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR-----IRSVRPDIAISSDFIVGFPG 341
               L    + GS+RI K +N+  +  +  + +        R V+        F+ G P 
Sbjct: 369 -RSGLTFAPEGGSERIRKVINKMVSEDDLIRTVSTAYGNGWRQVK------LYFMCGLPT 421

Query: 342 ETDDDFRATMDLVDKI---------GYAQAFSF---KYSPRLGTPGSNMLEQVDENVKAE 389
           ETD+D     D+  K+               +     + P+  TP      Q+       
Sbjct: 422 ETDEDVLQIADMATKVIAKGREVSGQNDIRCTVSIGGFVPKPHTP-FQWAPQLSAEETDA 480

Query: 390 RLLCLQKKLR---------------------EQQVSFNDACVGQIIEVLIEKHGKEKG 426
           RL  L++K+R                     E  +S  D  +G +I  + E  G+  G
Sbjct: 481 RLEKLREKIRGDKKYGRSIGFRYHDGKPGIVEGLLSRGDRRIGAVIRAVYEDGGRFDG 538


>gi|170766155|ref|ZP_02900966.1| radical SAM domain protein [Escherichia albertii TW07627]
 gi|170125301|gb|EDS94232.1| radical SAM domain protein [Escherichia albertii TW07627]
          Length = 736

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 48/297 (16%), Positives = 98/297 (32%), Gaps = 58/297 (19%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDN--GVCEIT--LLGQNVNA 234
           + I  GC   C+FC +    G  I SRS   +++E   + D   G   +   L G   N 
Sbjct: 380 VNIMRGCFGGCSFCSITEHEGRIIQSRSEDSIINEIEAIRDTVPGFTGVISDLGGPTANM 439

Query: 235 WR----------------------GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
           +                          +D       +L     ++KG+ ++   +    D
Sbjct: 440 YMLRCKSPRAEQTCRRLSCVYPDICPHMDTNHEPTINLYRRARDLKGIKKILIASGVRYD 499

Query: 273 MSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRRH--TAYEYRQIIDRI-RSVRP 327
           ++    +   +L    +  YL +  +   +  L  M +    +   ++++ D   +    
Sbjct: 500 IAVEDPRYIKELATHHVGGYLKIAPEHTEEGPLSKMMKPGMGSYDRFKELFDTYSKQAGK 559

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGY--AQAFSFKYSPRLGT---------PGS 376
           +  +   FI   PG  D+D       + K  +   Q  +F  SP   +         P +
Sbjct: 560 EQYLIPYFISAHPGTRDEDMVNLALWLKKHRFRLDQVQNFYPSPLANSTTMYYTGKNPLA 619

Query: 377 NMLEQ-----VDENVKAERL-LCLQK--------KLREQQVSF-NDACVGQIIEVLI 418
            +  +     V +  K  RL   L +         +R+   +      +G   + L+
Sbjct: 620 KIGYKSEDVFVPKGDKQRRLHKALLRYHDPANWPLIRQALEAMGKKHLIGSRRDCLV 676


>gi|168702555|ref|ZP_02734832.1| coproporphyrinogen III oxidase [Gemmata obscuriglobus UQM 2246]
          Length = 383

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 78/229 (34%), Gaps = 13/229 (5%)

Query: 186 CDKFCTFCVVPYTRG--IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
           C   C +C    T G    I   L  V  E   L +    E   +G           D  
Sbjct: 13  CAHHCGYCDFAVTAGQDHLIELYLEAVGAELAGLREPRPVESLFIGGGTPTHL--SADQL 70

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
           +     +   L   +G  R     ++P  +++        L   +  + + VQS     L
Sbjct: 71  RRLIETVTRWLPPGRGAGREFSIEANPDSLTEEKTAVMAALG--VNRVSVGVQSFRPESL 128

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
            +++RRH      + +D +R   P ++   D I G PG T + +RA +D           
Sbjct: 129 AALDRRHAPEHIGRAVDAVRKHIPVVSF--DLIFGAPGSTIEGWRADLDAALAFDPQHVS 186

Query: 364 SFKYSPRLGTPGSN-----MLEQVDENVKAERLLCLQKKLREQQVSFND 407
           ++  +   GTP        ++E V E+ +         +L        +
Sbjct: 187 TYGLTYEKGTPLWKRQTRGLVEAVPEDTELAMYEHAMDRLAAAGFEHYE 235


>gi|153939570|ref|YP_001391752.1| radical SAM domain-containing protein [Clostridium botulinum F str.
           Langeland]
 gi|152935466|gb|ABS40964.1| radical SAM domain protein [Clostridium botulinum F str. Langeland]
 gi|295319776|gb|ADG00154.1| radical SAM domain protein [Clostridium botulinum F str. 230613]
          Length = 363

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 38/210 (18%), Positives = 73/210 (34%), Gaps = 11/210 (5%)

Query: 176 VTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEI-TLLGQNVNA 234
           +      QEGC   C FC      G E +  + +  +  R+ I+  +  I         +
Sbjct: 7   IIPIFVAQEGCPHNCVFCNQHKITG-EKNEMIDE--NYVRETIEAYIKTIDRENSTLEVS 63

Query: 235 WRGKGLDGEKCTFSDLLYSLSEI---KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL 291
           + G    G        L  +++    KG +   + ++ P  +   ++            +
Sbjct: 64  FFGGTFTGIPIERQKSLLKVAKEYKDKGQIDYIHMSTRPDYIDREILDNLKKYS--ADII 121

Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351
            L VQS  D +L    R H+  E  +    I+       +    ++G PG+T      T+
Sbjct: 122 ELGVQSLDDEVLLKSGRGHSVEEVHRASKLIKEY--GFTLGHQIMLGLPGDTFKKDIETV 179

Query: 352 DLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
               ++    A  +       TP   ML++
Sbjct: 180 AKSLEMEPDIARIYPALVIKDTPMEYMLKK 209


>gi|47606277|sp|Q83JL2|YGIQ_SHIFL RecName: Full=UPF0313 protein ygiQ
 gi|281602406|gb|ADA75390.1| protein ygiQ [Shigella flexneri 2002017]
 gi|313648133|gb|EFS12579.1| radical SAM superfamily protein [Shigella flexneri 2a str. 2457T]
 gi|332765496|gb|EGJ95714.1| radical SAM superfamily protein [Shigella flexneri 2930-71]
 gi|333014886|gb|EGK34231.1| radical SAM superfamily protein [Shigella flexneri K-304]
          Length = 739

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 48/297 (16%), Positives = 98/297 (32%), Gaps = 58/297 (19%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDN--GVCEIT--LLGQNVNA 234
           + I  GC   C+FC +    G  I SRS   +++E   + D   G   +   L G   N 
Sbjct: 380 VNIMRGCFGGCSFCSITEHEGRIIQSRSEDSIINEIEAIRDTVPGFTGVISDLGGPTANM 439

Query: 235 WR----------------------GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
           +                          +D       +L     ++KG+ ++   +    D
Sbjct: 440 YMLRCKSPRAEQTCRRLSCVYPDICPHMDTNHEPTINLYRRARDLKGIKKILIASGVRYD 499

Query: 273 MSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRRH--TAYEYRQIIDRI-RSVRP 327
           ++    +   +L    +  YL +  +   +  L  M +    +   ++++ D   +    
Sbjct: 500 IAVEDPRYIKELATHHVGGYLKIAPEHTEEGPLSKMMKPGMGSYDRFKELFDTYSKQAGK 559

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGY--AQAFSFKYSPRLGT---------PGS 376
           +  +   FI   PG  D+D       + K  +   Q  +F  SP   +         P +
Sbjct: 560 EQYLIPYFISAHPGTRDEDMVNLALWLKKHRFRLDQVQNFYPSPLANSTTMYYTGKKPLA 619

Query: 377 NMLEQ-----VDENVKAERL-LCLQK--------KLREQQVSF-NDACVGQIIEVLI 418
            +  +     V +  K  RL   L +         +R+   +      +G   + L+
Sbjct: 620 KIGYKSEGVFVPKGDKQRRLHKALLRYHDPANWPLIRQALEAMGKKHLIGSRRDCLV 676


>gi|188493646|ref|ZP_03000916.1| radical SAM domain protein [Escherichia coli 53638]
 gi|218701787|ref|YP_002409416.1| hypothetical protein ECIAI39_3509 [Escherichia coli IAI39]
 gi|253772147|ref|YP_003034978.1| hypothetical protein ECBD_0724 [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254162965|ref|YP_003046073.1| hypothetical protein ECB_02888 [Escherichia coli B str. REL606]
 gi|300916876|ref|ZP_07133579.1| radical SAM domain protein [Escherichia coli MS 115-1]
 gi|188488845|gb|EDU63948.1| radical SAM domain protein [Escherichia coli 53638]
 gi|218371773|emb|CAR19626.1| conserved hypothetical protein [Escherichia coli IAI39]
 gi|242378568|emb|CAQ33355.1| conserved protein [Escherichia coli BL21(DE3)]
 gi|253323191|gb|ACT27793.1| Radical SAM domain protein [Escherichia coli 'BL21-Gold(DE3)pLysS
           AG']
 gi|253974866|gb|ACT40537.1| hypothetical protein ECB_02888 [Escherichia coli B str. REL606]
 gi|253979022|gb|ACT44692.1| hypothetical protein ECD_02888 [Escherichia coli BL21(DE3)]
 gi|300415846|gb|EFJ99156.1| radical SAM domain protein [Escherichia coli MS 115-1]
          Length = 739

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 48/297 (16%), Positives = 98/297 (32%), Gaps = 58/297 (19%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDN--GVCEIT--LLGQNVNA 234
           + I  GC   C+FC +    G  I SRS   +++E   + D   G   +   L G   N 
Sbjct: 380 VNIMRGCFGGCSFCSITEHEGRIIQSRSEDSIINEIEAIRDTVPGFTGVISDLGGPTANM 439

Query: 235 WR----------------------GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
           +                          +D       +L     ++KG+ ++   +    D
Sbjct: 440 YMLRCKSPRAEQTCRRLSCVYPDICPHMDTNHEPTINLYRRARDLKGIKKILIASGVRYD 499

Query: 273 MSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRRH--TAYEYRQIIDRI-RSVRP 327
           ++    +   +L    +  YL +  +   +  L  M +    +   ++++ D   +    
Sbjct: 500 IAVEDPRYIKELATHHVGGYLKIAPEHTEEGPLSKMMKPGMGSYDRFKELFDTYSKQAGK 559

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGY--AQAFSFKYSPRLGT---------PGS 376
           +  +   FI   PG  D+D       + K  +   Q  +F  SP   +         P +
Sbjct: 560 EQYLIPYFISAHPGTRDEDMVNLALWLKKHRFRLDQVQNFYPSPLANSTTMYYTGKNPLA 619

Query: 377 NMLEQ-----VDENVKAERL-LCLQK--------KLREQQVSF-NDACVGQIIEVLI 418
            +  +     V +  K  RL   L +         +R+   +      +G   + L+
Sbjct: 620 KIGYKSEDVFVPKGDKQRRLHKALLRYHDPANWPLIRQALEAMGKKHLIGSRRDCLV 676


>gi|229826223|ref|ZP_04452292.1| hypothetical protein GCWU000182_01595 [Abiotrophia defectiva ATCC
           49176]
 gi|229789093|gb|EEP25207.1| hypothetical protein GCWU000182_01595 [Abiotrophia defectiva ATCC
           49176]
          Length = 495

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 41/249 (16%), Positives = 78/249 (31%), Gaps = 27/249 (10%)

Query: 129 GPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
           G           E+   G+   +    +  K   L       + K G + ++ I   C  
Sbjct: 128 GKNEEEVRNFYHEQYLCGEEKTELSIEIAKKENELL---QKLDYKNGYSIYIGIPF-CPT 183

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTF 247
            C +C          S  +     +  + +     EI      +   +   +  G     
Sbjct: 184 TCLYCSFT-------SYPIGGYKKKVGEYLQALFKEIDFASTILPHKKLTTVYIGGGTPT 236

Query: 248 SDLLYSLSEIKGLVRLRYTTSHPRDMSDCL----------IKAHGDLDVLMPYLHLPVQS 297
           S     L  +   + ++   +  ++ +             +K    L   +  + +  Q+
Sbjct: 237 SISAEELELLLDYINMKLPMASVKEFTVEAGRPDSITRDKLKVMKRLG--VKRMSINPQT 294

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSV-RPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
            SD+ LK + R H +   R+     R     DI +  D IVG PGET  D   T+  + K
Sbjct: 295 MSDKTLKFIGRMHDSESVRRAFTMAREEGMEDINM--DLIVGLPGETVKDTEYTLSEIKK 352

Query: 357 IGYAQAFSF 365
           +        
Sbjct: 353 LDPDDLTVH 361


>gi|86610007|ref|YP_478769.1| radical SAM domain-containing protein [Synechococcus sp.
           JA-2-3B'a(2-13)]
 gi|86558549|gb|ABD03506.1| radical SAM domain protein [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 523

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 25/180 (13%), Positives = 60/180 (33%), Gaps = 8/180 (4%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISR-SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK 238
           +  + GC   C +C+     G ++    + +V+ E  +L + GV                
Sbjct: 244 VQTKRGCPHNCCYCIYTVIEGKQVRLNPVDEVIREMMQLYERGVRNFWFTDAQFIPAHRY 303

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
             D E     +LL  + +               +++  L +        M Y  + + SG
Sbjct: 304 IEDAE-----ELLQKILDAGMTDIRWAAYIRADNLTPKLAELMVKTG--MSYFEIGITSG 356

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           S  +++ M   +      +    ++    +  +S ++      E  +  R T+    ++ 
Sbjct: 357 SQELVRKMRMGYNLRTVLESCRYLKQAGFNDLVSVNYSFNVIDERPETIRQTVRYHRELE 416


>gi|323692759|ref|ZP_08106987.1| oxygen-independent coproporphyrinogen III oxidase [Clostridium
           symbiosum WAL-14673]
 gi|323503201|gb|EGB19035.1| oxygen-independent coproporphyrinogen III oxidase [Clostridium
           symbiosum WAL-14673]
          Length = 407

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 39/227 (17%), Positives = 78/227 (34%), Gaps = 34/227 (14%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD---- 241
           C K C +C        E++R         +K ++  + EI   G  +    G+  D    
Sbjct: 29  CVKKCLYCDFLSFAADEVTR---------KKYVEQLIKEIETCGTRIT---GRDADAAFP 76

Query: 242 ------GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY----- 290
                 G     S     +  +   V+  +      +++        D   L  Y     
Sbjct: 77  VISVFIGGGTPSSLCPEQICAVMNAVKENFRLLPDAEITIEANPGTLDNKKLRAYKNSGI 136

Query: 291 --LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFR 348
             L L +QS +   L+ + R H+  E+ +     R    D  I+ D +   PG++ + + 
Sbjct: 137 NRLSLGLQSANPGELRELGRIHSWNEFLESYRLAREAGFD-NINVDLMSALPGQSFESYA 195

Query: 349 ATMDLVDKIGYAQAFSFKYSPRLGTPGSNML----EQVDENVKAERL 391
            T++ V  +      ++      GTP  +      E + +  +  R+
Sbjct: 196 DTLECVALLEPEHISAYSLIIEEGTPFYDKYSGRAEVLPDEEEDRRM 242


>gi|297519865|ref|ZP_06938251.1| hypothetical protein EcolOP_19651 [Escherichia coli OP50]
          Length = 736

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 48/297 (16%), Positives = 98/297 (32%), Gaps = 58/297 (19%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDN--GVCEIT--LLGQNVNA 234
           + I  GC   C+FC +    G  I SRS   +++E   + D   G   +   L G   N 
Sbjct: 380 VNIMRGCFGGCSFCSITEHEGRIIQSRSEDSIINEIEAIRDTVPGFTGVISDLGGPTANM 439

Query: 235 WR----------------------GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
           +                          +D       +L     ++KG+ ++   +    D
Sbjct: 440 YMLRCKSPRAEQTCRRLSCVYPDICPHMDTNHEPTINLYRRARDLKGIKKILIASGVRYD 499

Query: 273 MSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRRH--TAYEYRQIIDRI-RSVRP 327
           ++    +   +L    +  YL +  +   +  L  M +    +   ++++ D   +    
Sbjct: 500 IAVEDPRYIKELATHHVGGYLKIAPEHTEEGPLSKMMKPGMGSYDRFKELFDTYSKQAGK 559

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGY--AQAFSFKYSPRLGT---------PGS 376
           +  +   FI   PG  D+D       + K  +   Q  +F  SP   +         P +
Sbjct: 560 EQYLIPYFISAHPGTRDEDMVNLALWLKKHRFRLDQVQNFYPSPLANSTTMYYTGKNPLA 619

Query: 377 NMLEQ-----VDENVKAERL-LCLQK--------KLREQQVSF-NDACVGQIIEVLI 418
            +  +     V +  K  RL   L +         +R+   +      +G   + L+
Sbjct: 620 KIGYKSEDVFVPKGDKQRRLHKALLRYHDPANWPLIRQALEAMGKKHLIGSRRDCLV 676


>gi|238755601|ref|ZP_04616938.1| Oxygen-independent coproporphyrinogen III oxidase [Yersinia ruckeri
           ATCC 29473]
 gi|238706201|gb|EEP98581.1| Oxygen-independent coproporphyrinogen III oxidase [Yersinia ruckeri
           ATCC 29473]
          Length = 457

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 44/252 (17%), Positives = 87/252 (34%), Gaps = 20/252 (7%)

Query: 169 GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEI--T 226
           G   +R ++ ++ I   C K C FC        +  +   + +    K I          
Sbjct: 46  GRYPERPLSLYVHIPF-CHKLCYFCGCNKLVTRQQHK-ADEYLAVLEKEIRQQATLFKGR 103

Query: 227 LLGQNVNAWRGKGLDGEKCTFSDLLYSLSE----IKGLVRLRYTTSHPRDMSDCLIKAHG 282
            + Q ++   G      K   + L+  L E    + G  +       PR++   +I    
Sbjct: 104 QVSQ-MHWGGGTPTYLNKTQITQLMNLLRENFDFLPGAEQSIEV--DPREIELDVIDHLR 160

Query: 283 DLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGE 342
                   L + VQ  +  + + +NR         +I R +++  + + + D I G P +
Sbjct: 161 AEG--FNRLSMGVQDFNKEVQRLVNREQDEDFIFALIARAKALGFN-STNIDLIYGLPKQ 217

Query: 343 TDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM---LEQVDENVKAERLLCLQKKLR 399
           T + F  T+  V ++   +   F Y+       +      E +      +RL  LQ  + 
Sbjct: 218 TPESFAFTLKRVVELNPDRLSVFNYAHLPALFAAQRKIKDEDLPSPE--QRLDILQHSIS 275

Query: 400 EQQVSFNDACVG 411
               S     +G
Sbjct: 276 FLTDSGYQ-FIG 286


>gi|237723393|ref|ZP_04553874.1| biotin synthase [Bacteroides sp. 2_2_4]
 gi|229447915|gb|EEO53706.1| biotin synthase [Bacteroides sp. 2_2_4]
          Length = 350

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/216 (13%), Positives = 64/216 (29%), Gaps = 21/216 (9%)

Query: 169 GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI-EISR-SLSQVVDEARKLIDNGVCEIT 226
            +  K  +   + I   C   C +C +       E  R S   +++  ++  + G     
Sbjct: 45  HFGNKIYIRGLIEISNCCRNNCYYCGIRKGNPNIERYRLSRESILNCCKQGYELGFRTFV 104

Query: 227 LLGQNVNAWRGKGLDGEKCTFSDLLYSLS---EIKGLVRLRYTTSHPRDMSDCLIKAHGD 283
           L G   +A     ++             +    +    R  Y        +  L++    
Sbjct: 105 LQGGEDSALTNDQIEMTVARIRQEYPDCAITLSLGEKSREAYERFFRAGANRYLLRHETY 164

Query: 284 LDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGET 343
            ++    LH    SG                  Q +  ++ +       +  +VG PG+T
Sbjct: 165 NELHYRQLHPAEMSG--------------KRRLQCLADLKEI--GYQTGTGIMVGSPGQT 208

Query: 344 DDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            +     +  ++K+         + P   TP +   
Sbjct: 209 VEHIIEDLLFIEKLRPEMIGIGPFLPHHDTPFAEYP 244


>gi|193203648|ref|NP_490846.4| hypothetical protein Y92H12BL.4 [Caenorhabditis elegans]
 gi|151302928|gb|AAK19005.5| Hypothetical protein Y92H12BL.4 [Caenorhabditis elegans]
          Length = 397

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 3/55 (5%)

Query: 6  KLIGVAHMVSQIVDQCIVP---QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVN 57
          K +             +VP   Q+ +V+++GC  N  DS  M  +    GY+ V 
Sbjct: 26 KQVPKEQQPDDANVDSMVPGVGQKVWVRTWGCSHNTSDSEYMSGLLQQAGYDVVK 80


>gi|114778269|ref|ZP_01453128.1| Radical SAM [Mariprofundus ferrooxydans PV-1]
 gi|114551371|gb|EAU53927.1| Radical SAM [Mariprofundus ferrooxydans PV-1]
          Length = 513

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 34/203 (16%), Positives = 64/203 (31%), Gaps = 12/203 (5%)

Query: 179 FLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK 238
           ++    GC   C FC+         +    Q++    KL   GV     + +  N     
Sbjct: 169 YVEASRGCPFLCEFCL-SSIDKKVRNIDTEQLLLALDKLYQRGVRSFKFIDRTFNLNV-- 225

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
                K     L + L      V        P    D L +           L + +Q+ 
Sbjct: 226 -----KIASRLLDFFLERQPCFVHFEVI---PDHFPDALKERIARFPAAALQLEIGIQTL 277

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           +  +   ++R     + ++ I  +        +  D IVG PGET D F   ++ +  + 
Sbjct: 278 NTEVADRIHRNLKMDKIKENIRFLEEES-SAHMHLDLIVGLPGETLDSFGDNLNRLCTMA 336

Query: 359 YAQAFSFKYSPRLGTPGSNMLEQ 381
            ++          GT      ++
Sbjct: 337 NSEIQIGILKKLSGTSLHRHDDE 359


>gi|333000159|gb|EGK19742.1| radical SAM superfamily protein [Shigella flexneri K-218]
          Length = 739

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 48/297 (16%), Positives = 98/297 (32%), Gaps = 58/297 (19%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDN--GVCEIT--LLGQNVNA 234
           + I  GC   C+FC +    G  I SRS   +++E   + D   G   +   L G   N 
Sbjct: 380 VNIMRGCFGGCSFCSITEHEGRIIQSRSEDSIINEIEAIRDTVPGFTGVISDLGGPTANM 439

Query: 235 WR----------------------GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
           +                          +D       +L     ++KG+ ++   +    D
Sbjct: 440 YMLRCKSPRAEQTCRRLSCVYPDICPHMDTNHEPTINLYRRARDLKGIKKILIASGVRYD 499

Query: 273 MSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRRH--TAYEYRQIIDRI-RSVRP 327
           ++    +   +L    +  YL +  +   +  L  M +    +   ++++ D   +    
Sbjct: 500 IAVEDPRYIKELATHHVGGYLKIAPEHTEEGPLSKMMKPGMGSYDRFKELFDTYSKQAGK 559

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGY--AQAFSFKYSPRLGT---------PGS 376
           +  +   FI   PG  D+D       + K  +   Q  +F  SP   +         P +
Sbjct: 560 EQYLIPYFISAHPGTRDEDMVNLALWLKKHRFRLDQVQNFYPSPLANSTTMYYTGKKPLA 619

Query: 377 NMLEQ-----VDENVKAERL-LCLQK--------KLREQQVSF-NDACVGQIIEVLI 418
            +  +     V +  K  RL   L +         +R+   +      +G   + L+
Sbjct: 620 KIGYKSEGVFVPKGDKQRRLHKALLRYHDPANWPLIRQALEAMGKKHLIGSRRDCLV 676


>gi|311029531|ref|ZP_07707621.1| Mg-protoporphyrin IX monomethyl ester oxidativecyclase [Bacillus
           sp. m3-13]
          Length = 580

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 51/329 (15%), Positives = 104/329 (31%), Gaps = 36/329 (10%)

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +     + +   K   +L++V+ G     +  E L R   V+ +V  +      +LL+  
Sbjct: 67  IEETIKVMSMLKKINPELILVLGGPEVTYDVSEWLDRLTDVDFIVLGEGEITFKQLLQEL 126

Query: 144 RFGKRVVDTD-----------YSVEDKFERLSIVDGGYNRKRGVT------AFLTIQEGC 186
           +  +                  S +     L  +   Y     +T       +     GC
Sbjct: 127 QGKQNFESISGLAYRDGENKKISPQRNKVDLKELPSPYRFDEDLTQLGKRVTYFETSRGC 186

Query: 187 DKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT 246
              C FC+     G        +V ++ R L++NG   I  + +  N  R   ++  +  
Sbjct: 187 PFSCQFCLSSIEVG-VRYFDREKVKEDIRFLMNNGAKTIKFVDRTFNISRSYAVEMFRFL 245

Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAH-GDLDVLMPYLHLPVQSGSDRILKS 305
             + L       G V     T+    M   +I+    +    +    + VQS +D   + 
Sbjct: 246 IDEHL------PGTVFQFEITADI--MRPEVIEFLNQEAPAGLFRFEIGVQSTNDSTNEL 297

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           + R+    +  + +  ++     I    D I G P E    F+ T + V  +   +    
Sbjct: 298 VMRKQNFAKLSRTVTMVKEG-GKIDQHLDLIAGLPEEDYHSFKKTFNDVFALRPEELQLG 356

Query: 366 KYSPRLGT--------PGSNMLEQVDENV 386
                 GT             ++     +
Sbjct: 357 FLKMLRGTGLRIRSNDHAYIYMDHAPYEI 385


>gi|291524323|emb|CBK89910.1| Fe-S oxidoreductase [Eubacterium rectale DSM 17629]
          Length = 621

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 39/254 (15%), Positives = 84/254 (33%), Gaps = 15/254 (5%)

Query: 108 CVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVD 167
           C   A   ++   + I                +  A  G +  +  ++     + +S + 
Sbjct: 124 CGYYAHKRKLSDIAGIAFRKNSTGNSTSNRTSVNNA--GCKADEIVFTSPRPIKNMSEIP 181

Query: 168 GGYNRKRGV---TAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCE 224
             Y+          +     GC   C++C+          R    V  E +  ID  V +
Sbjct: 182 FCYDTLDDFSNRIIYYESSRGCPFSCSYCL-SSVDKTLRFRDTEIVKRELKFFIDQKVPQ 240

Query: 225 ITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL 284
           I  + +  N               +L   +      V   +       ++   ++   D+
Sbjct: 241 IKFVDRTFNCNH--------AHAMELWRFIKANDNGVTNFHFEISADLLNQEELELISDM 292

Query: 285 DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETD 344
              +  L + VQS ++  +K ++R       ++++  I+S   +I    D I G P E  
Sbjct: 293 RPGLIQLEIGVQSTNEVTIKEIHRTMKLERLKEVVRLIQSGN-NIHEHLDLIAGLPYEDY 351

Query: 345 DDFRATMDLVDKIG 358
           D F  + D + ++ 
Sbjct: 352 DSFGRSFDEIYELK 365


>gi|269964585|ref|ZP_06178824.1| oxygen-independent coproporphyrinogen III oxidase [Vibrio
           alginolyticus 40B]
 gi|269830712|gb|EEZ84932.1| oxygen-independent coproporphyrinogen III oxidase [Vibrio
           alginolyticus 40B]
          Length = 463

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 44/250 (17%), Positives = 91/250 (36%), Gaps = 24/250 (9%)

Query: 173 KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNV 232
           +R ++ ++ I   C K C +C          S    + +D     I        L+G+ V
Sbjct: 56  ERPLSLYVHIPF-CHKLCYYCGCNKVITRH-SHKADEYLDVLEHEIRQ--RAALLVGRTV 111

Query: 233 NAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL----- 287
                 G  G     S+    ++ +  L+R  +T S   ++S  +     +L +L     
Sbjct: 112 TQLHFGG--GTPTFLSE--KQITRVMSLLRQEFTFSSDAEISIEVDPREIELTMLDHLRS 167

Query: 288 --MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS-DFIVGFPGETD 344
                L + VQ  +  + K +NR         ++ R + +      ++ D I G P +T 
Sbjct: 168 EGFNRLSIGVQDFNKEVQKLVNREQDEEFIVAMVARAKEL--GFRSTNLDLIYGLPKQTK 225

Query: 345 DDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM---LEQVDENVKAERLLCLQKKLREQ 401
           + F  T++ V ++   +   F Y+       +      E + +    E++  LQ  +   
Sbjct: 226 ESFAKTLEQVLEMQPGRLSVFNYAHMPQLFAAQRKIKDEDLPKAE--EKMAILQDTIATL 283

Query: 402 QVSFNDACVG 411
             +     +G
Sbjct: 284 TGAGYQ-FIG 292


>gi|212636543|ref|YP_002313068.1| Fe-S oxidoreductase [Shewanella piezotolerans WP3]
 gi|212558027|gb|ACJ30481.1| Fe-S oxidoreductase, putative [Shewanella piezotolerans WP3]
          Length = 294

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 38/200 (19%), Positives = 69/200 (34%), Gaps = 18/200 (9%)

Query: 188 KFCTFCVV---PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK 244
             CT+C V    +    E+S  + + + + R+ +     +     Q   +   +      
Sbjct: 31  GGCTYCNVASFSHEHKTELS--IQEQLTQGRERLSTKPSKYIAYFQAYTSTYDEY----- 83

Query: 245 CTFSDLLYSLSEIKG-LVRLRYTTSHPRDMSDCLIKAHGDLDVL--MPYLHLPVQSGSDR 301
                       IKG  +      + P  + D +I+       L    +L L +Q+ +++
Sbjct: 84  --LVLKQKYDEAIKGTDIVGLCVGTRPDCVPDEVIELLAQYQQLGLDVWLELGLQTANNK 141

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
            LK +NR H    Y   + R R     I + +  I+G PGE   D+  T++ V   G   
Sbjct: 142 TLKRINRGHDFDVYADTVKRARER--GIKVCTHLILGLPGEGHTDYLETLNKVLDAGVDG 199

Query: 362 AFSFKYSPRLG-TPGSNMLE 380
                     G T       
Sbjct: 200 LKLHPLHIVEGSTMAKAWRN 219


>gi|325577702|ref|ZP_08147977.1| lipoyl synthase [Haemophilus parainfluenzae ATCC 33392]
 gi|325160447|gb|EGC72573.1| lipoyl synthase [Haemophilus parainfluenzae ATCC 33392]
          Length = 320

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 31/214 (14%), Positives = 70/214 (32%), Gaps = 10/214 (4%)

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           + +    E  S  +       G   F+ +   C + C FC V    G  +     +    
Sbjct: 61  HGLHSVCEEASCPNLHECFNHGTATFMILGAICTRRCPFCDV--AHGKPLPPDPDEPRKL 118

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
           A  + D  +  + +   +    R    D     F++ +  +  +   +++       R  
Sbjct: 119 AETIQDMKLKYVVITSVD----RDDLPDRGAGHFAECVKEVRALNPGIKIEILVPDFRGR 174

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
               ++   D     P +         R+ K +          +++   + + P+I   S
Sbjct: 175 ITQALEKLKDNP---PDVFNHNLENVPRLYKEIRPGADYQWSLKLLHDFKEMFPNIPTKS 231

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
             +VG  GET+++    M+ +   G       +Y
Sbjct: 232 GLMVGL-GETNEEILQVMEDLRANGVTMLTLGQY 264


>gi|291557494|emb|CBL34611.1| Coproporphyrinogen III oxidase and related Fe-S oxidoreductases
           [Eubacterium siraeum V10Sc8a]
          Length = 480

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 42/201 (20%), Positives = 77/201 (38%), Gaps = 11/201 (5%)

Query: 174 RGVTAFLTIQEGCDKFCTFCVVPYTRG----IEISRSLSQVVDEARKLIDNGVCEITLLG 229
           R ++ +++I   C   C++C      G      I      ++ E     D  V   +L  
Sbjct: 156 RKISLYVSIPF-CPSRCSYCSFISASGEGALKLIGDYFGLLLKELDIYAD-IVKRFSLKV 213

Query: 230 QNVNAWRGKGLDGEKCTFSDLLYSLSE--IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL 287
             V    G            L+  L E  I  +         P  +++  ++A  +    
Sbjct: 214 DTVYIGGGTPTTLSASQLDRLIDKLGEFDIANIREFTAEAGRPDTITEDKLRALKNGG-- 271

Query: 288 MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDF 347
           +  + +  QS +D +L+++ RRHT  +  +  D  R V  D  I+SD I G P ET+  F
Sbjct: 272 VRRISINPQSMNDSVLEAVGRRHTVKQVCEAFDIARKVGFD-CINSDIIAGLPAETEHSF 330

Query: 348 RATMDLVDKIGYAQAFSFKYS 368
            A++  + ++          S
Sbjct: 331 EASLQQLCELSPENITVHTLS 351


>gi|182414600|ref|YP_001819666.1| oxygen-independent coproporphyrinogen III oxidase [Opitutus terrae
           PB90-1]
 gi|177841814|gb|ACB76066.1| oxygen-independent coproporphyrinogen III oxidase [Opitutus terrae
           PB90-1]
          Length = 395

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 32/195 (16%), Positives = 73/195 (37%), Gaps = 20/195 (10%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C   C FC          ++  +Q V    + +   +  +T        + G G  G   
Sbjct: 26  CASTCDFCAF------YQTKPTAQAVKSFVEGVARELGLVTWSRPVNTVFWGGGTPG--- 76

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCL------IKAHGDLDVL-MPYLHLPVQSG 298
                   L  +  LVR R   + P + S  +      ++    L  + +  + + VQS 
Sbjct: 77  --LLAARDLRRLGLLVRERCGGT-PVEWSVEMAPGSVTVERLAALREVGVTRISMGVQSF 133

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
              +L ++ R+H+  +  +  DR+R+     +++ D +   PG+T+ +++  +     + 
Sbjct: 134 QPALLDALGRQHSREQIYRAYDRVRAA-GFASVNIDMMFALPGQTEAEWQNDLRAALALE 192

Query: 359 YAQAFSFKYSPRLGT 373
                ++  +    T
Sbjct: 193 PDHISTYCLTFEEDT 207


>gi|169335730|ref|ZP_02862923.1| hypothetical protein ANASTE_02150 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258468|gb|EDS72434.1| hypothetical protein ANASTE_02150 [Anaerofustis stercorihominis DSM
           17244]
          Length = 289

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 44/217 (20%), Positives = 82/217 (37%), Gaps = 25/217 (11%)

Query: 179 FLTIQEGCD-KFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG 237
            + +  GC    CTFC +   +   I R++ +++ +          E   L +N++    
Sbjct: 18  IVQVTIGCSQNGCTFCSMYKDKNFHI-RNIDEILTD--------FKEARELYKNISKIFL 68

Query: 238 KGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL----DVLMPYLHL 293
              D   C    L+  L  IK         S        L+K+  +L    D  +  ++L
Sbjct: 69  ADGDALICKADMLIKILDFIKEYFPECKQISCYASAKSILLKSEEELKTLKDKGLKMVYL 128

Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPG-ETDDDFR-ATM 351
            ++SGSD+ILK + +  T+ E  +  ++I +    I +S   I G  G E  ++    T 
Sbjct: 129 GLESGSDKILKRVKKGVTSKEMIEAANKIHNA--GIMLSVTAISGLGGYELWEEHAVETG 186

Query: 352 DLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
             + K+              G P       ++  +K 
Sbjct: 187 KTLSKMNPQYIGLLTLMIEPGVP-------LENEIKK 216


>gi|119717681|ref|YP_924646.1| radical SAM domain-containing protein [Nocardioides sp. JS614]
 gi|119538342|gb|ABL82959.1| Radical SAM domain protein [Nocardioides sp. JS614]
          Length = 663

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 57/321 (17%), Positives = 106/321 (33%), Gaps = 49/321 (15%)

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
             ++D D         + + +  + R       + I  GC + C FC           RS
Sbjct: 258 HTLMDLDAWPYPAKPLVPLAETVHERYS-----VEIFRGCTRGCRFCQAGMITRPVRERS 312

Query: 207 LSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           +  + D     I   G  E+ LL  +       G         D+   L++      +  
Sbjct: 313 IRTIGDMVENGIRKSGFEEVGLLSLSSADHTEIG---------DVAKGLADRYEGTNVSL 363

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPY-LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           +    R  +  +  A+          L    + GS+R+ + +N+  T  +  + +    +
Sbjct: 364 SLPSTRVDAFNITLANEFSRNGRRSGLTFAPEGGSERMRRVINKMVTEEDLIRTVAA--A 421

Query: 325 VRPDIA-ISSDFIVGFPGETDDDFRATMDLVDKI---------GYAQAFSF---KYSPRL 371
                  +   F+ G P ETD+D  A  +L  ++               +     + P+ 
Sbjct: 422 YSHGWRQVKLYFMCGLPTETDEDVLAIAELAKQVIAKGREVSGRNDIRCTVSIGGFVPKA 481

Query: 372 GTPGSNMLEQVDENVKAERLLCLQKKLRE-------QQVSFNDACVGQII--------EV 416
            TP      Q+D     ERL  L+  +RE           ++D   G I          V
Sbjct: 482 HTP-FQWAGQLDAETTDERLKKLRDVVREDKRFGRAIGFRYHDGKPGTIEGLLSRGDRRV 540

Query: 417 --LIEKHGKEKGKLVGRSPWL 435
             +IE+  ++ G+  G S   
Sbjct: 541 GAIIEQVWRDGGRFDGWSEHF 561


>gi|188532192|ref|YP_001905989.1| coproporphyrinogen III oxidase [Erwinia tasmaniensis Et1/99]
 gi|188027234|emb|CAO95073.1| O2-independent coproporphyrinogen III oxidase [Erwinia tasmaniensis
           Et1/99]
          Length = 457

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 38/234 (16%), Positives = 77/234 (32%), Gaps = 17/234 (7%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC           +     +    + +            N   W      G   
Sbjct: 62  CHRLCYFCGCNKQVTRHQHK-ADDYLAALMQEVAARARLFQRRTVNQIHW------GGGT 114

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL-------MPYLHLPVQSG 298
                   +S +   +R  +  S   ++S  +     +LDVL          L + VQ  
Sbjct: 115 PTFLNKGQISRLMASLRQHFRISDTAEISIEVDPREIELDVLDHLRAEGFNRLSMGVQDF 174

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           + ++ + +NR         +I R R +   ++ + D I G P +T + F  T+  V ++ 
Sbjct: 175 NKQVQEKVNRVQDEEGIFALIARARQL-GFVSTNIDLIYGLPTQTPESFAFTLQKVAELA 233

Query: 359 YAQAFSFKYSPRLGT-PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVG 411
             +   F Y+      P    + + +     ++L  LQ+ +           +G
Sbjct: 234 PDRLSVFNYAHMPALFPAQRKIREAELPDVQQKLTILQQTIAALTAQGYQ-FIG 286


>gi|170745484|ref|YP_001766941.1| radical SAM domain-containing protein [Methylobacterium
           radiotolerans JCM 2831]
 gi|170659085|gb|ACB28139.1| Radical SAM domain protein [Methylobacterium radiotolerans JCM
           2831]
          Length = 679

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 44/243 (18%), Positives = 79/243 (32%), Gaps = 34/243 (13%)

Query: 161 ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLID 219
              S  D        +   +TI  GC   CTFC +    G  I +RS   ++ E  ++ D
Sbjct: 324 PHPSYGDAKIPAWDMIKFSVTIMRGCFGGCTFCSITEHEGRVIQNRSEGSILREIERIRD 383

Query: 220 NGVCEITLL----GQNVNAWRGKGLDGE----------------------KCTFSDLLYS 253
                  ++    G   N +R    D +                            L   
Sbjct: 384 KTPGFTGVISDVGGPTANMYRMACKDPKIEAACRLPSCVFPDVCPNLNTSHDDLIRLYRK 443

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRRH- 310
           + E+KG+ ++   +    D++    +   +L    +   L +  +      L  M +   
Sbjct: 444 VREVKGVKKVMVASGVRYDLAVKSPEYIKELVTHHVGGRLKIAPEHTERGPLDKMMKPGI 503

Query: 311 -TAYEYRQIIDRI-RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY--AQAFSFK 366
            T   ++++ D   +       +   FI   PG TD+D       + K  Y   Q  +F 
Sbjct: 504 GTYDRFKEMFDAAAKEAGKKYYLIPYFIAAHPGTTDEDMMHLALWLKKNNYRADQVQTFL 563

Query: 367 YSP 369
            SP
Sbjct: 564 PSP 566


>gi|82703108|ref|YP_412674.1| lipoyl synthase [Nitrosospira multiformis ATCC 25196]
 gi|123727129|sp|Q2Y7I9|LIPA_NITMU RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|82411173|gb|ABB75282.1| lipoic acid synthetase [Nitrosospira multiformis ATCC 25196]
          Length = 316

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 72/221 (32%), Gaps = 12/221 (5%)

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
           + +  +  +    E  S  + G    +G   F+ + + C + C FC V    G       
Sbjct: 49  KRILREQKLHTVCEEASCPNIGECFGKGTATFMILGDLCTRRCPFCDV--AHGRPRPPDP 106

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
            + +  A+ +    +  + +   +    R    DG    F D +  +       ++    
Sbjct: 107 EEPLHLAQSIAAMKLKYVVITSVD----RDDLRDGGAQHFVDCIREVRAHSPQTKIEILV 162

Query: 268 SHPRD-MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
              R  +   L K       +M +    V     R+ +            +++   ++  
Sbjct: 163 PDFRGRLDIALEKLFACPPDVMNHNLETV----PRLYRQCRPGADYTHSLRLLKEFKARF 218

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           P I   S  ++G  GETD++    M  + K         +Y
Sbjct: 219 PGIPTKSGLMLGL-GETDEEILDVMRDLRKHDVEMLTIGQY 258


>gi|257452276|ref|ZP_05617575.1| coproporphyrinogen III oxidase [Fusobacterium sp. 3_1_5R]
 gi|257465924|ref|ZP_05630235.1| coproporphyrinogen III oxidase [Fusobacterium gonidiaformans ATCC
           25563]
 gi|315917080|ref|ZP_07913320.1| oxygen-independent coproporphyrinogen III oxidase [Fusobacterium
           gonidiaformans ATCC 25563]
 gi|317058819|ref|ZP_07923304.1| oxygen-independent coproporphyrinogen III oxidase [Fusobacterium
           sp. 3_1_5R]
 gi|313684495|gb|EFS21330.1| oxygen-independent coproporphyrinogen III oxidase [Fusobacterium
           sp. 3_1_5R]
 gi|313690955|gb|EFS27790.1| oxygen-independent coproporphyrinogen III oxidase [Fusobacterium
           gonidiaformans ATCC 25563]
          Length = 472

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 42/233 (18%), Positives = 86/233 (36%), Gaps = 25/233 (10%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLG-------QNVNAWRGK 238
           C   C++C        EIS     V    ++ ++    EI   G       Q + +    
Sbjct: 153 CPTKCSYC---SFASYEIS---GGVGRYYKEFVNTLEKEIRFTGEQLRKQPQQIESVYFG 206

Query: 239 GLDGEKCTFSDLLYSL----SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP 294
           G      T  DL   L     EI       +T    R+ S  L K        +  + L 
Sbjct: 207 GGTPSTLTEEDLERILKVFREEIDFSFVREFTFEAGREDSITLKKLEILKKYGVDRVSLN 266

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
            Q+  ++ L  ++R+     + ++ +  + +     ++ DFI+G P ET +D   T++ +
Sbjct: 267 PQTFQEKTLARVHRKFNRRHFEEVYEDCKRL--GFILNMDFILGLPEETTEDILDTLEQL 324

Query: 355 DKIGYAQAFSFKYSPRLGTPGSNMLE--QVDENVKAERLLC-LQKKLREQQVS 404
               +       +S       S + +  Q  E +  +++   +   +RE+++ 
Sbjct: 325 K--QFDVENITIHS-LAFKRASKLAKGSQEREEIDRKKIEEKISSLMREKKLE 374


>gi|188588502|ref|YP_001920586.1| radical SAM superfamily protein [Clostridium botulinum E3 str.
           Alaska E43]
 gi|188498783|gb|ACD51919.1| radical SAM superfamily protein [Clostridium botulinum E3 str.
           Alaska E43]
          Length = 340

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 44/211 (20%), Positives = 73/211 (34%), Gaps = 16/211 (7%)

Query: 176 VTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVV--DEARKLIDNGVCEIT----LLG 229
           +      QEGC   C FC      G      L  +V  D  RK ID  +  IT    ++ 
Sbjct: 7   IIPIFVPQEGCPHKCVFCNQDRITG------LKDIVTTDIVRKTIDEYLKTITNKEAIIE 60

Query: 230 QNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMP 289
            +        +  EK      +    + KGL+     ++ P  + + ++    +    + 
Sbjct: 61  VSFFGGTFTAVKEEKQRAFLEIAKGYKDKGLIDKIRLSTRPDAIDNYILTYLKEYK--VD 118

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
            + L VQS  D ILK   R H   +  +    I+       +    + G PG+T +    
Sbjct: 119 IIELGVQSLDDEILKRSGRGHYVSDVEKASALIKQY--GFVLGHQIMPGLPGDTFEKDIL 176

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           T  L  K+       +       TP   M +
Sbjct: 177 TTKLSIKMKPDICRIYPALVIKDTPMEKMYK 207


>gi|157374266|ref|YP_001472866.1| putative radical SAM protein [Shewanella sediminis HAW-EB3]
 gi|157316640|gb|ABV35738.1| conserved hypothetical radical SAM protein [Shewanella sediminis
           HAW-EB3]
          Length = 308

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 38/200 (19%), Positives = 71/200 (35%), Gaps = 16/200 (8%)

Query: 188 KFCTFCVVPYTR---GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK 244
             CT+C V       G E+S  + + +D+ R+ +     +     Q          D  +
Sbjct: 43  GGCTYCNVASFNHEHGTELS--IQEQLDQGRERVAGRSSKYIAYFQ----AYTSTYDEYR 96

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL--DVLMPYLHLPVQSGSDRI 302
              +    ++      +      + P  +SD +I+         +  +L L +QS  D+ 
Sbjct: 97  VLKTKYDEAIK--DPDIVGLCVGTRPDCVSDDVIELLASYQDRGIEVWLELGLQSAKDKT 154

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           LK +NR H   +Y   + R R+    I + +  I+G P E   D+  +++ V   G    
Sbjct: 155 LKRINRGHLMADYIDTVTRARAR--GIKVCTHLILGLPDEEHQDYLNSLNAVLAAGVDGL 212

Query: 363 FSFKYSPRLG-TPGSNMLEQ 381
                    G T        
Sbjct: 213 KLHPLHIVEGSTMAKAWRND 232


>gi|33864057|ref|NP_895617.1| hypothetical protein PMT1790 [Prochlorococcus marinus str. MIT
           9313]
 gi|33635641|emb|CAE21965.1| conserved hypothetical protein [Prochlorococcus marinus str. MIT
           9313]
          Length = 888

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 41/254 (16%), Positives = 80/254 (31%), Gaps = 34/254 (13%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
           + I+ GC + C FC                V++       NG+        ++ +     
Sbjct: 273 VEIRRGCTRGCRFCQPGMLTRPARDVDPEAVIEAV----HNGMKRTGYSDFSLLSLSCSD 328

Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
                    +L   L++    ++L        D     I        L        ++GS
Sbjct: 329 YLALPAVGVELRNRLADQNVTLQLPSQRVDRFDDDIAHIVGGARQAAL----TFAPEAGS 384

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPD--IAISSDFIVGFPGETDDD---FRATMDLV 354
            R+   +N+  T      ++  IR+   +    +   F++G P ETD+D      T  ++
Sbjct: 385 QRLRNVVNKGLT---NADLLQGIRTAMQNGFRKVKLYFMIGLPSETDEDVLGIADTCQML 441

Query: 355 DKIGYA------QAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQ------- 401
            +          +     ++P+  TP       V       R   LQK  +         
Sbjct: 442 QEQCRDLGRLNLKITVSNFTPKPHTPFQ--WHSVSTQELQRRQQKLQKAFQALRGVKVNF 499

Query: 402 ---QVSFNDACVGQ 412
              ++S  +  VG+
Sbjct: 500 TDVRLSAMEDFVGR 513


>gi|296328080|ref|ZP_06870614.1| oxygen-independent coproporphyrinogen III oxidase [Fusobacterium
           nucleatum subsp. nucleatum ATCC 23726]
 gi|296154856|gb|EFG95639.1| oxygen-independent coproporphyrinogen III oxidase [Fusobacterium
           nucleatum subsp. nucleatum ATCC 23726]
          Length = 348

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 36/227 (15%), Positives = 70/227 (30%), Gaps = 19/227 (8%)

Query: 174 RGVTAFLTIQE-GCDKFCTFCVVPYTRGIEISRSLSQVVDEA----RKLIDNGVCEITLL 228
           +     + I   GC   C FC      G E   SL  + +      + L  N + ++   
Sbjct: 2   KHYNIPVFISHFGCPNACVFCNQKKINGRETDVSLDDLKNIIDSYLKTLPKNSIKQVAFF 61

Query: 229 GQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLM 288
           G       G  ++ +K     +   +           T     D    ++         +
Sbjct: 62  GGTFT---GISINLQKEYLEVVKKYIDNNDVEGVRISTRPECIDD--EILTQLKKYG--V 114

Query: 289 PYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFR 348
             + L +QS  D++LK+  R +T    ++  D I+S      +    ++G P        
Sbjct: 115 KTIELGIQSLDDKVLKATGRNYTYDIVKKSCDLIKSY--GFELGVQLMIGLPKSDFKSDL 172

Query: 349 ATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ-----VDENVKAER 390
            +      +    A  +      GT    M ++     +      ER
Sbjct: 173 QSAMKSLDLNPDIARIYPTLVIKGTELEFMYKKNLYQSLSIEEAVER 219


>gi|195348257|ref|XP_002040667.1| GM22215 [Drosophila sechellia]
 gi|306755881|sp|B4IAA7|LIAS_DROSE RecName: Full=Lipoyl synthase, mitochondrial; AltName: Full=Lipoate
           synthase; Short=LS; Short=Lip-syn; AltName: Full=Lipoic
           acid synthase; Flags: Precursor
 gi|194122177|gb|EDW44220.1| GM22215 [Drosophila sechellia]
          Length = 377

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/186 (14%), Positives = 63/186 (33%), Gaps = 15/186 (8%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQV---VDEARKLIDNGVCEITLLGQNVNAWRGKGLDG 242
           C + C FC V   R          V   V+ A  +   G+  I L   +    R    DG
Sbjct: 134 CTRGCRFCSVKTARKP----PPLDVNEPVNTATAIASWGLDYIVLTSVD----RDDLPDG 185

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
                ++ +  +      + +       R  +   ++   +  + +   ++         
Sbjct: 186 GSKHIAETVREIKARNSNIFVECLVPDFRG-NLECVETIANSGLDVYAHNIETVEKLTPY 244

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           ++     +   +  Q++   +   P++   S  ++G  GETD++   T+  + + G    
Sbjct: 245 VRDRRAHYR--QTLQVLTEAKRFNPNLITKSSIMLGL-GETDEEIENTLKDLREAGVDCV 301

Query: 363 FSFKYS 368
              +Y 
Sbjct: 302 TLGQYM 307


>gi|141795626|gb|AAI39619.1| Zgc:162738 protein [Danio rerio]
          Length = 100

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 17/32 (53%)

Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERV 56
          ++ + ++YGCQMN  D+     +    GY R 
Sbjct: 45 RKVYFETYGCQMNTNDTEIAWSILQKAGYSRT 76


>gi|87301526|ref|ZP_01084366.1| hypothetical protein WH5701_02589 [Synechococcus sp. WH 5701]
 gi|87283743|gb|EAQ75697.1| hypothetical protein WH5701_02589 [Synechococcus sp. WH 5701]
          Length = 559

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 51/261 (19%), Positives = 96/261 (36%), Gaps = 27/261 (10%)

Query: 174 RGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVN 233
                 + +   C + C FC+  Y      + SL   +  A +        + LLG +V 
Sbjct: 228 WPSIHMVEVVRSCPELCRFCLASYLTLPFRTPSLDDGLIPAVEAGLGATRRLGLLGASVT 287

Query: 234 AWRGKGLDGEKCTFSDLLYSLSEIK-GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLH 292
                        F DLL  L + +    R+  ++     ++  L +           L 
Sbjct: 288 QH---------PQFDDLLSWLDQDRFEDTRVSVSSVRAATVTPQLARILAK--RGSKSLT 336

Query: 293 LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD--IAISSDFIVGFPGETDDDFRAT 350
           + ++SGS R+ + +N++ ++    +I    R  +      +    +VG P E D+D  AT
Sbjct: 337 IAIESGSQRMREVVNKKLSSE---EIFAAARYAKEGGLTGLKLYGMVGLPTECDEDIEAT 393

Query: 351 MDLVDKIGYA------QAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVS 404
            DL+  +  A            + P+  TP         E  K  RL  L K+L+ + + 
Sbjct: 394 ADLLLALKKATPGLRLSLGVSSFVPKAHTP-FQWEPVRPEAEK--RLKRLAKRLKPKGIE 450

Query: 405 FNDACVG-QIIEVLIEKHGKE 424
                 G  +I+ L+ +  + 
Sbjct: 451 LRPESYGWSVIQALLSRSDRR 471


>gi|331084368|ref|ZP_08333472.1| oxygen-independent coproporphyrinogen III oxidase [Lachnospiraceae
           bacterium 6_1_63FAA]
 gi|330401632|gb|EGG81213.1| oxygen-independent coproporphyrinogen III oxidase [Lachnospiraceae
           bacterium 6_1_63FAA]
          Length = 381

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 38/204 (18%), Positives = 69/204 (33%), Gaps = 12/204 (5%)

Query: 186 CDKFCTFC--VVPYTRGIEISRSLSQVVDEAR--KLIDNGVC-EITLLGQNVNAWRGKGL 240
           C K C +C  +       E  + ++ ++ E    +    G       +G    +      
Sbjct: 14  CVKKCEYCDFLSWNAEEEERQQYVAALLSEIESYREFAKGYRVSTIFIGGGTPSV----- 68

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300
                   D+L  + EI  L R    T      +    K     +  +  L + +QS  D
Sbjct: 69  -LLPKQMEDILQKIYEIFELERRAEITIEVNPGTVDEEKLQCYKENGVNRLSMGLQSVKD 127

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
             L+ + R HT  E+ +  +  R    D  IS D I   PG+T  +++  ++        
Sbjct: 128 EKLRLLGRIHTYQEFVESYELARKAGFD-NISIDLISSVPGQTLQEWKEELETAAAQNPE 186

Query: 361 QAFSFKYSPRLGTPGSNMLEQVDE 384
               ++     GTP      +  E
Sbjct: 187 HISVYQLIIEEGTPFYEKYAEHPE 210


>gi|294142184|ref|YP_003558162.1| lipoic acid synthase [Shewanella violacea DSS12]
 gi|293328653|dbj|BAJ03384.1| lipoic acid synthase [Shewanella violacea DSS12]
          Length = 321

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 25/184 (13%), Positives = 58/184 (31%), Gaps = 14/184 (7%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V    G  +     + +  A+ + D  +  + +   +    R    DG   
Sbjct: 94  CTRRCPFCDV--AHGRPLKPDAEEPIKLAQTIRDMKLKYVVITSVD----RDDLRDGGAQ 147

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLD--VLMPYLHLPVQSGSDRIL 303
            F+D +  +  +   +++       R   D  ++        V    L            
Sbjct: 148 HFADCIREIRLLNPEIKIETLVPDFRGRIDAALEILATEPPDVFNHNLETAPMHY----- 202

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           +             ++ + ++  P I   S  ++G  GET+++    +  +         
Sbjct: 203 RKARPGANYQWSLDLLKKFKARHPHIPTKSGLMMGL-GETNEEIAQVLRDLRAHNVEMLT 261

Query: 364 SFKY 367
             +Y
Sbjct: 262 LGQY 265


>gi|313682161|ref|YP_004059899.1| radical sam domain protein [Sulfuricurvum kujiense DSM 16994]
 gi|313155021|gb|ADR33699.1| Radical SAM domain protein [Sulfuricurvum kujiense DSM 16994]
          Length = 499

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 45/290 (15%), Positives = 88/290 (30%), Gaps = 20/290 (6%)

Query: 89  NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
            L  +  K   D ++++ G  A      +       + ++  +      EL +       
Sbjct: 74  ELIQTLKKVSPDTIIILGGPEAGYLPHRV--DLSKADYIISGEGEVAFYELCKSILSNDA 131

Query: 149 VVDTDYSVEDKFERLSIVDGGYNR-----KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
               ++ ++     L  ++  YN            ++    GC   C FC+         
Sbjct: 132 P--QEHFIKAPLPDLKSINLPYNAYEDEDVEHRYIYVEASRGCPFECEFCL-SSIDEKVR 188

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           +  L Q+++E   L   G      + +  N                L + LS+       
Sbjct: 189 NFPLDQLLEEFEILWQRGARSFKFIDRTFNLNMTF-------ANRILDFFLSKEPPYFAH 241

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
                      D L +           L + +Q+    I K +NR     +    I R  
Sbjct: 242 FEVIPD--HFPDVLKEKIARFPAGSLQLEIGIQTLDPLIAKGINRPLKLDKIMDNI-RFL 298

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
                  +  D IVG PGE+ + F   +D +  + +++          GT
Sbjct: 299 ENETRAHMHLDLIVGLPGESIEGFGRNLDTLVSLTHSEIQIGILKNLSGT 348


>gi|284923039|emb|CBG36132.1| radical SAM superfamily protein [Escherichia coli 042]
          Length = 739

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 48/297 (16%), Positives = 98/297 (32%), Gaps = 58/297 (19%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDN--GVCEIT--LLGQNVNA 234
           + I  GC   C+FC +    G  I SRS   +++E   + D   G   +   L G   N 
Sbjct: 380 VNIMRGCFGGCSFCSITEHEGRIIQSRSEDSIINEIEAIRDTVPGFTGVISDLGGPTANM 439

Query: 235 WR----------------------GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
           +                          +D       +L     ++KG+ ++   +    D
Sbjct: 440 YMLRCKSPRAEQTCRRLSCVYPDICPHMDTNHEPTINLYRRARDLKGIKKILIASGVRYD 499

Query: 273 MSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRRH--TAYEYRQIIDRI-RSVRP 327
           ++    +   +L    +  YL +  +   +  L  M +    +   ++++ D   +    
Sbjct: 500 IAVEDPRYIKELATHHVGGYLKIAPEHTEEGPLSKMMKPGMGSYDRFKELFDTYSKQAGK 559

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGY--AQAFSFKYSPRLGT---------PGS 376
           +  +   FI   PG  D+D       + K  +   Q  +F  SP   +         P +
Sbjct: 560 EQYLIPYFISAHPGTRDEDMVNLALWLKKHRFRLDQVQNFYPSPLANSTTMYYTGKNPLA 619

Query: 377 NMLEQ-----VDENVKAERL-LCLQK--------KLREQQVSF-NDACVGQIIEVLI 418
            +  +     V +  K  RL   L +         +R+   +      +G   + L+
Sbjct: 620 KIGYKSEDVFVPKGDKQRRLHKALLRYHDPANWPLIRQALEAMGKKHLIGSRRDCLV 676


>gi|251779232|ref|ZP_04822152.1| radical SAM superfamily protein [Clostridium botulinum E1 str.
           'BoNT E Beluga']
 gi|243083547|gb|EES49437.1| radical SAM superfamily protein [Clostridium botulinum E1 str.
           'BoNT E Beluga']
          Length = 340

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 44/211 (20%), Positives = 73/211 (34%), Gaps = 16/211 (7%)

Query: 176 VTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVV--DEARKLIDNGVCEIT----LLG 229
           +      QEGC   C FC      G      L  +V  D  RK ID  +  IT    ++ 
Sbjct: 7   IIPIFVPQEGCPHKCVFCNQDRITG------LKDIVTTDIVRKTIDEYLKTITNKEAIIE 60

Query: 230 QNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMP 289
            +        +  EK      +    + KGL+     ++ P  + + ++    +    + 
Sbjct: 61  VSFFGGTFTAVKEEKQRAFLEIAKGYKNKGLIDKIRLSTRPDAIDNYILTYLKEYK--VD 118

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
            + L VQS  D ILK   R H   +  +    I+       +    + G PG+T +    
Sbjct: 119 IIELGVQSLDDEILKRSGRGHYVSDVEKASALIKQY--GFVLGHQIMPGLPGDTFEKDIL 176

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           T  L  K+       +       TP   M +
Sbjct: 177 TTKLSIKMKPDICRIYPALVIKDTPMEKMYK 207


>gi|197119850|ref|YP_002140277.1| radical SAM domain iron-sulfur cluster-binding oxidoreductase with
           cobalamin binding-like domain [Geobacter bemidjiensis
           Bem]
 gi|197089210|gb|ACH40481.1| radical SAM domain iron-sulfur cluster-binding oxidoreductase with
           cobalamin binding-like domain [Geobacter bemidjiensis
           Bem]
          Length = 369

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 48/248 (19%), Positives = 83/248 (33%), Gaps = 30/248 (12%)

Query: 104 VVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERL 163
           V+ G +A    EE+ R    V V  G         ++E+A   K ++       D     
Sbjct: 87  VLGGALATFAAEEMSRCFDAVVVGEG-------ELVMEQALSSKGIIQGLKPDLDALPLP 139

Query: 164 SIVDGGYNRKRGVTAF----LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLID 219
                G +R   + +     +    GC   C FC           R L+ V +E      
Sbjct: 140 DYNGFGIDRYNELHSIRYMGVLTSRGCPYSCRFCA---QTCSSQFRRLTAVFEEIDGYRA 196

Query: 220 N-GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLI 278
           N G   I              L+  K  F ++   + E     R    ++  R       
Sbjct: 197 NYGATHIVF--------NDNTLNLRKDRFMEICAGMKE-----RGLAWSAAIRVDVFDEE 243

Query: 279 KAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVG 338
            A    +       + ++S  D  L++MN++ T  +    ++ +R    +I    + +VG
Sbjct: 244 MAAAAKEGGCSRFVVGIESFIDAKLQAMNKQITRAQIITTLELLRKY--EIPYHGNVLVG 301

Query: 339 FPGETDDD 346
            P ET  D
Sbjct: 302 LPDETYAD 309


>gi|320160979|ref|YP_004174203.1| oxygen-independent coproporphyrinogen-III oxidase [Anaerolinea
           thermophila UNI-1]
 gi|319994832|dbj|BAJ63603.1| oxygen-independent coproporphyrinogen-III oxidase [Anaerolinea
           thermophila UNI-1]
          Length = 405

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 33/208 (15%), Positives = 69/208 (33%), Gaps = 25/208 (12%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNV--NAWRGKGLDGE 243
           C   C +C      G+E                +    EI ++ +             G 
Sbjct: 25  CVHRCAYCDFNTYAGME---------KWIPAYTEALCREIAVVSEAAPEGISVQTIFFGG 75

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDC---------LIKAHGDLDVLMPYLHLP 294
                     L+++   VR  +      ++S           L +   +       L + 
Sbjct: 76  GTPSYLSASLLNKVLHTVRSHFQVMEKAEISLEANPGTVEPHLFEELREAG--FNRLSIG 133

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI-AISSDFIVGFPGETDDDFRATMDL 353
           +QS   + LK + R HT  + +  + + R        I+ D I G PG+T   ++ +++ 
Sbjct: 134 MQSAIPKELKFLTRIHTVEDVQNSVIQARKA--GFQNINLDLIFGIPGQTIQTWKNSLEF 191

Query: 354 VDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
              +       +  +   GTP ++ +E+
Sbjct: 192 ALSLQPEHVSLYSLTVEEGTPLNHWVEE 219


>gi|313623477|gb|EFR93679.1| radical SAM protein, family [Listeria innocua FSL J1-023]
          Length = 321

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 38/195 (19%), Positives = 70/195 (35%), Gaps = 19/195 (9%)

Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDE--ARKLIDNGVCEITLLG-----QNVNAWRGKGL 240
             CTFC    +     +R+L   V     R  +     +   +       N +A   +  
Sbjct: 52  GGCTFCSAAGSGDFAGNRALDLKVQFQQVRDKMQTKWKDGKCIAYFQAFTNTHAPVAE-- 109

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL-DVLMPYLHLPVQSGS 299
                   +   ++    G+V L    + P  + D +++   +L +    +L L +QS  
Sbjct: 110 ------LREKFETVLNEPGVVGLSI-ATRPDCLPDDVVEYLAELNERTYLWLELGLQSAH 162

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
           D   + +NR H    Y + + +++    +I I +  I G P ET +    T   V + G 
Sbjct: 163 DETGRLINRAHDYDCYLEGVRKLQK--HNIRICTHIINGLPKETPEMMMETAQKVVESGV 220

Query: 360 AQAFSFKYSPRLGTP 374
                       GTP
Sbjct: 221 DGIKIHLLHLLKGTP 235


>gi|260774868|ref|ZP_05883769.1| lipoate synthase [Vibrio coralliilyticus ATCC BAA-450]
 gi|260609123|gb|EEX35281.1| lipoate synthase [Vibrio coralliilyticus ATCC BAA-450]
          Length = 321

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/182 (15%), Positives = 62/182 (34%), Gaps = 10/182 (5%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V    G  ++   ++    A+ + D  +  + +   +    R    DG   
Sbjct: 94  CTRRCPFCDV--AHGRPVAPEENEPQKLAQTISDMKLKYVVITSVD----RDDLRDGGAK 147

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
            F+D    +      +R+       R   D  ++   D     P +       + R+ + 
Sbjct: 148 HFADCNREIRAKNPNIRIETLVPDFRGRMDVALELMKDNP---PDVFNHNLETAPRLYRK 204

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
                      Q++ + +   PD+   S  ++G  GET ++    +  +   G       
Sbjct: 205 ARPGANYKWSLQLLKKFKEQHPDVPTKSGLMMGL-GETKEEIVEVLKDLRAHGVTMLTLG 263

Query: 366 KY 367
           +Y
Sbjct: 264 QY 265


>gi|258406367|ref|YP_003199109.1| Radical SAM domain-containing protein [Desulfohalobium retbaense
           DSM 5692]
 gi|257798594|gb|ACV69531.1| Radical SAM domain protein [Desulfohalobium retbaense DSM 5692]
          Length = 465

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 41/219 (18%), Positives = 79/219 (36%), Gaps = 18/219 (8%)

Query: 175 GVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA 234
              A +    GC   C +C   +     + RS   V  E R     GV +         A
Sbjct: 225 PEYAPILGSRGCPYGCEYCASRHLYSGFVQRSFESVWQEFRAQYQAGVRDF--------A 276

Query: 235 WRGKGLDGEKCTFSD-LLYSLSEIKGLVRLRYTT-SHPRDMSDCLIKAHGDLDVLMPYLH 292
           +    L     T+    L+ + E+   +RL      H + ++  + +A       +  + 
Sbjct: 277 FYDDALLLRPTTWLLPFLHQICELPEPIRLHTPNAMHVQALTPEVCRAL--FRAGLTTIR 334

Query: 293 LPVQSGS-DRILKSMNRRHTAYEYRQIIDRIRSVRPDIA-ISSDFIVGFPGETDDDFRAT 350
           L ++SG  D        + +A ++++ +D + +       I +  + G P + + +  A 
Sbjct: 335 LGLESGDFDHRFD---AKLSAPQWQEGVDNLFAAGFRAQDIGAYILFGLPDQNEAEVLAA 391

Query: 351 MDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAE 389
             L    G  +     +SP  GTP      +V +   AE
Sbjct: 392 ARLAAASGI-RPQLAHFSPLPGTPLFERAVEVSDRPIAE 429


>gi|188585164|ref|YP_001916709.1| Radical SAM domain protein [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179349851|gb|ACB84121.1| Radical SAM domain protein [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 657

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 48/304 (15%), Positives = 107/304 (35%), Gaps = 46/304 (15%)

Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           +      + + D D         +  +D  +NR     AF+ +  GC + C FC      
Sbjct: 267 IPEVIHKRLIRDLDEIEYPTEMIVPNIDIVHNR-----AFVELFRGCTQGCRFCQAGMIY 321

Query: 200 GIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258
                RS + +VD +++++   G  E++L    ++      +D    + +D        +
Sbjct: 322 RPVRDRSPANLVDLSQQIVSKTGYEELSLTS--LSTADYPQIDSLLDSLNDCF------Q 373

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
             + L   +      S  L K           L    ++G+ R+   +N++    +  + 
Sbjct: 374 NDIALSLPSLRADSFSVDLAKKVQQGKK--TGLTFAPEAGTPRLRNVINKKVHEEDMMKA 431

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI-GYAQ-----------AFSFK 366
            +       D  I   F++G P E ++D    ++L +K+    +             +  
Sbjct: 432 AEAAFKSGWD-KIKLYFMIGLPTEREEDLEGIVELSNKVIKLYKQITGKNRLKLNVSTST 490

Query: 367 YSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFN----------------DACV 410
           + P+  TP   M  Q+       R   L++ L    ++++                D  +
Sbjct: 491 FVPKPHTPFQWM-GQLSREEINRRQKYLKQNLNHPAINYSWTDPNPSFLEACIAKGDRKI 549

Query: 411 GQII 414
           G+++
Sbjct: 550 GKVL 553


>gi|156936146|ref|YP_001440062.1| coproporphyrinogen III oxidase [Cronobacter sakazakii ATCC BAA-894]
 gi|156534400|gb|ABU79226.1| hypothetical protein ESA_04045 [Cronobacter sakazakii ATCC BAA-894]
          Length = 457

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 44/247 (17%), Positives = 88/247 (35%), Gaps = 20/247 (8%)

Query: 174 RGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVN 233
           R ++ ++ I   C K C FC         ++R   +       L    +    L      
Sbjct: 51  RPLSLYVHIPF-CHKLCYFC----GCNKIVTRQQHKADQYLDVLEQEIIHRAPLFA---G 102

Query: 234 AWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL------ 287
               +   G           +S + GL+R  +  +   ++S  +     +LDVL      
Sbjct: 103 RRVSQLHWGGGTPTYLSKAQISRLMGLLRANFRFNDDAEISIEVDPREIELDVLDHLHAE 162

Query: 288 -MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS-DFIVGFPGETDD 345
               L + VQ  +  + + +NR         +I R R V      ++ D I G P +T +
Sbjct: 163 GFRRLSMGVQDFNKEVQRLVNREQDEDFIFALIKRAREV--GFTSANIDLIYGLPKQTPE 220

Query: 346 DFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVS 404
            F  T+  V ++   +   F Y+       +   +++ D     ++L  LQ+ ++    +
Sbjct: 221 SFAFTLQRVAELNPDRLSVFNYAHLPTLFAAQRKIKKADLPSAQQKLDILQQTIQSLTHA 280

Query: 405 FNDACVG 411
                +G
Sbjct: 281 GYQ-FIG 286


>gi|301056460|ref|YP_003794671.1| lipoyl synthase [Bacillus anthracis CI]
 gi|300378629|gb|ADK07533.1| lipoyl synthase [Bacillus cereus biovar anthracis str. CI]
          Length = 298

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 36/214 (16%), Positives = 78/214 (36%), Gaps = 13/214 (6%)

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           ++V ++ +  +I +    RK     F+ +   C + C FC V      E+   L +    
Sbjct: 37  HTVCEEAKCPNIHECWAVRK--TATFMILGAVCTRACRFCAVKTGLPTEL--DLQEPERV 92

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
           A  ++  G+  + +        R    DG    F++ + ++        +    S    +
Sbjct: 93  ADSVVQMGLKHVVITAV----ARDDLKDGGAAVFAETVRAVRRKNPFTSIEVLPSDMGGV 148

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
            + L         ++ +    V+  S+R+      ++      + + R + ++ DI   S
Sbjct: 149 EENLKMLMDAKPDILNHNIETVRRLSNRV--RARAKYDRS--LEFLRRAKEMQLDIPTKS 204

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
             +VG  GET +D    MD +           +Y
Sbjct: 205 SIMVGL-GETREDLIEAMDDLRANNVDILTLGQY 237


>gi|144898629|emb|CAM75493.1| Lipoyl synthase [Magnetospirillum gryphiswaldense MSR-1]
          Length = 384

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 34/218 (15%), Positives = 70/218 (32%), Gaps = 17/218 (7%)

Query: 153 DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVD 212
           D ++    E  +  + G   K     F+ + + C + C FC V    G   +  +S+  +
Sbjct: 116 DKNLHTVCEEAACPNIGECWKHKHATFMILGDTCTRACAFCNVK--TGKPGAVDVSEPEN 173

Query: 213 EARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
            A  +   G+  + +   +    R    DG    F   +  +        +   T   RD
Sbjct: 174 LAASVASMGLKHVVITSVD----RDDLADGGAFQFVACIERIRATSPDCTIEVLTPDFRD 229

Query: 273 MSDCLIKAHGDLDVLMPY---LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329
               +         +  +       +  G       +      +   +++  ++ + P I
Sbjct: 230 KDGAIAAVARARPDVFNHNLETVPRLYPG-------IRPGARYFHSLRLLQMVKEIDPTI 282

Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
              S  +VG  GET  +    MD +   G       +Y
Sbjct: 283 FTKSGIMVGL-GETRAEVLQVMDDMRSAGIDFMTIGQY 319


>gi|46907892|ref|YP_014281.1| hypothetical protein LMOf2365_1685 [Listeria monocytogenes serotype
           4b str. F2365]
 gi|47093773|ref|ZP_00231522.1| conserved hypothetical protein TIGR01212 [Listeria monocytogenes
           str. 4b H7858]
 gi|226224264|ref|YP_002758371.1| hypothetical protein Lm4b_01674 [Listeria monocytogenes Clip81459]
 gi|254824275|ref|ZP_05229276.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194]
 gi|254852288|ref|ZP_05241636.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503]
 gi|254931604|ref|ZP_05264963.1| conserved hypothetical protein [Listeria monocytogenes HPB2262]
 gi|300766054|ref|ZP_07076023.1| hypothetical protein LMHG_12484 [Listeria monocytogenes FSL N1-017]
 gi|46881161|gb|AAT04458.1| conserved hypothetical protein TIGR01212 [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|47017860|gb|EAL08644.1| conserved hypothetical protein TIGR01212 [Listeria monocytogenes
           str. 4b H7858]
 gi|225876726|emb|CAS05435.1| unnamed protein product [Listeria monocytogenes serotype 4b str.
           CLIP 80459]
 gi|258605594|gb|EEW18202.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503]
 gi|293583157|gb|EFF95189.1| conserved hypothetical protein [Listeria monocytogenes HPB2262]
 gi|293593510|gb|EFG01271.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194]
 gi|300513256|gb|EFK40334.1| hypothetical protein LMHG_12484 [Listeria monocytogenes FSL N1-017]
 gi|328465027|gb|EGF36306.1| hypothetical protein LM1816_09702 [Listeria monocytogenes 1816]
 gi|332312103|gb|EGJ25198.1| Putative protein ytqA [Listeria monocytogenes str. Scott A]
          Length = 321

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 38/195 (19%), Positives = 70/195 (35%), Gaps = 19/195 (9%)

Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDE--ARKLIDNGVCEITLLG-----QNVNAWRGKGL 240
             CTFC    +     +R+L   V     R  +     +   +       N +A   +  
Sbjct: 52  GGCTFCSAAGSGDFAGNRALDLKVQFQQVRDKMQTKWKDGKCIAYFQAFTNTHAPVAE-- 109

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL-DVLMPYLHLPVQSGS 299
                   +   ++    G+V L    + P  + D +++   +L +    +L L +QS  
Sbjct: 110 ------LREKFETVLNEPGVVGLSI-ATRPDCLPDDVVEYLAELNERTYLWLELGLQSAH 162

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
           D   + +NR H    Y + + +++    +I I +  I G P ET +    T   V + G 
Sbjct: 163 DETGRLINRAHDYDCYLEGVHKLQK--HNIRICTHIINGLPKETPEMMMETTRKVVESGV 220

Query: 360 AQAFSFKYSPRLGTP 374
                       GTP
Sbjct: 221 DGIKIHLLHLLKGTP 235


>gi|315925402|ref|ZP_07921613.1| conserved hypothetical protein [Pseudoramibacter alactolyticus ATCC
           23263]
 gi|315621303|gb|EFV01273.1| conserved hypothetical protein [Pseudoramibacter alactolyticus ATCC
           23263]
          Length = 452

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 46/278 (16%), Positives = 83/278 (29%), Gaps = 26/278 (9%)

Query: 123 IVNVVVGPQTYYRLPELLERARFG----KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTA 178
           +V+ +        +P ++ R   G        D D       +R       Y        
Sbjct: 146 VVDALAEGAAPPDIPGVIRRTEAGLHLNPPANDFDMGDYQMIDRDLNDPIPYLAVNKYVE 205

Query: 179 FLTIQ--EGCDKFCTFCVVPYTRGI-EISRSLSQVVDEARKLIDN-GVCEITLLGQNVNA 234
            + ++   GC   C +C  P   G     R    VVDE   L    GV  I      VN 
Sbjct: 206 SIGVETKRGCCYRCGYCAYPKLSGRCVRLRDPKDVVDEIIMLKKRYGVTRIHFTDSIVNF 265

Query: 235 WRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP 294
                        +     L    G+    +        +    + +           L 
Sbjct: 266 PTSH-------LDAICEELLRRNAGIHWSGFFREDL--FTPENARLYAASG--CESFSLS 314

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
                 + L  +++     +     + +  V   I     ++V  PGE+    R +  ++
Sbjct: 315 PDGLCQQHLDLLDKHIRVEQILTTAEILSRV--GITTVYHYLVNLPGESPRTIRESKQMI 372

Query: 355 DKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLL 392
           D I        + +  LGT   N++ ++  + K ERL 
Sbjct: 373 DAI----YDIHRGTKSLGTIVLNLV-RIMPDTKIERLA 405


>gi|302342087|ref|YP_003806616.1| radical SAM domain protein [Desulfarculus baarsii DSM 2075]
 gi|301638700|gb|ADK84022.1| Radical SAM domain protein [Desulfarculus baarsii DSM 2075]
          Length = 578

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 49/260 (18%), Positives = 92/260 (35%), Gaps = 33/260 (12%)

Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSLS 208
           +D  + +  +     I D        V   +    GC   C+FC +   +G  I SRS  
Sbjct: 284 LDMLHDLPFRRVAHPIHDQPVPGLATVATSIISHRGCGGGCSFCSLALHQGRAISSRSAR 343

Query: 209 QVVDEARK--LIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS------------------ 248
            ++ EA++   ++NG   I+ +G       G    G++ + +                  
Sbjct: 344 SILAEAQELARLNNGRVAISDVGGPSANMWGGRCAGDRQSCARASCLTPKICPQFQVDQM 403

Query: 249 ---DLLYSLSEIKGLVRLRYTTSHPRDMS-DCLIKAHGDLDVLM-PYLHLPVQSGSDRIL 303
              DLL  L+   G+  +R  +    D++      A   ++  +   L L  +  S  +L
Sbjct: 404 AIIDLLTRLAATPGVGHVRVASGVRFDLALQQPAYARALVERFVGGQLKLAPEHVSPGVL 463

Query: 304 KSMNRRHT--AYEYRQIIDRI-RSVRPDIAISSDFIVGFPGETDDDFRATMDLV--DKIG 358
             M +        + ++ ++I R    +  +   F+  FPG  D   R     +      
Sbjct: 464 ALMRKPGLDVFERFLRVFEQISRQAGKEQYVVPYFMSAFPGCGDAQMRELTQWLGQRHWR 523

Query: 359 YAQAFSFKYSPRLGTPGSNM 378
             Q   F+  P  GT  + M
Sbjct: 524 PQQVQCFE--PTPGTVATAM 541


>gi|322421669|ref|YP_004200892.1| hypothetical protein GM18_4202 [Geobacter sp. M18]
 gi|320128056|gb|ADW15616.1| conserved hypothetical protein [Geobacter sp. M18]
          Length = 302

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/200 (15%), Positives = 74/200 (37%), Gaps = 11/200 (5%)

Query: 189 FCTFC--VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT 246
            C FC      + GI     +++ ++ A++++         +    +             
Sbjct: 41  GCIFCGGKGSGSYGILQGVGVAEQLEHAKEVMVRKYKAARFIAYFQSYSNTYAPVERLRA 100

Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL-HLPVQSGSDRILKS 305
             D   S++++ GL       + P  + +  +    +      +   L +QS  DR L +
Sbjct: 101 LYDEALSVADVVGL----IVGTRPDCLPEETLDLLAEYARRCYFWLELGLQSPLDRTLSA 156

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           + R H    +   +++ +     I + +  I+G PGE+ ++  +  + +++ G       
Sbjct: 157 IGRGHDLASFTAAVEQCQKR--GIRVCAHIILGLPGESREEMLSGAEFLNRCGVEGVKIH 214

Query: 366 KYSPRLGTPGSNML--EQVD 383
                 GT  + +   E+V 
Sbjct: 215 LLHVMRGTRLAELYQAEEVP 234


>gi|170757628|ref|YP_001781996.1| radical SAM domain-containing protein [Clostridium botulinum B1
           str. Okra]
 gi|169122840|gb|ACA46676.1| radical SAM domain protein [Clostridium botulinum B1 str. Okra]
          Length = 363

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 39/210 (18%), Positives = 74/210 (35%), Gaps = 11/210 (5%)

Query: 176 VTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEI-TLLGQNVNA 234
           +      QEGC   C FC      G E    + +  +  R+ I+  +  I         +
Sbjct: 7   IIPIFVAQEGCPHNCVFCNQYKITG-EKDEMIDE--NYVRETIEAYIKTIDRENSTLEVS 63

Query: 235 WRGKGLDGEKCTFSDLLYSLSEI---KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL 291
           + G    G        L  +++    KG +   + ++ P  +   ++    +       +
Sbjct: 64  FFGGTFTGIPIERQKSLLKVAKEYKDKGQIDYIHMSTRPDYIDREILDNLKEYS--ADII 121

Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351
            L VQS  D +L    R H+  E  +    IR       +    ++G PG+T      T+
Sbjct: 122 ELGVQSLDDEVLLKSGRGHSVEEVHRASKLIREY--GFTLGHQIMLGLPGDTFKKDIETV 179

Query: 352 DLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
               ++    A  +       TP  +ML++
Sbjct: 180 AKSLEMEPDIARIYPALVIKDTPMEDMLKK 209


>gi|120556010|ref|YP_960361.1| coproporphyrinogen III oxidase [Marinobacter aquaeolei VT8]
 gi|120325859|gb|ABM20174.1| oxygen-independent coproporphyrinogen III oxidase [Marinobacter
           aquaeolei VT8]
          Length = 469

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 37/241 (15%), Positives = 81/241 (33%), Gaps = 28/241 (11%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C   C +C         I++   + +    +++     +  L G +    +     G   
Sbjct: 72  CAHLCYYC----ACNKVITKKRDKAMPYVERVLKEAAIQSKLFGADRPVKQLHWGGGTPT 127

Query: 246 TF-SDLLYSLSE--------IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQ 296
               D++  L            G  R       PR++ +  +    +L      + L VQ
Sbjct: 128 FLPRDVMQHLMAGYGELFNLQSGDDRDYSVEIDPREVDEDTLSTLWELG--FNRISLGVQ 185

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS---DFIVGFPGETDDDFRATMDL 353
             +  + K++NR         +++  R     I   S   D I G P +T + F  T++ 
Sbjct: 186 DVNPEVQKAVNRIQPRDMTESVLNEAR----HIGFRSINLDLIYGLPYQTPESFAETLES 241

Query: 354 VDKIGYAQAFSFKYSPRLG--TPGSNM-LEQVDENVKAERLLCLQKKLREQQVSFNDACV 410
           V ++   +   F Y+       P + +  + +      ++L  L   +     +  +  +
Sbjct: 242 VIEMSPDRLSVFSYAHLPDRFYPQTRIQADTLPSP--QQKLTILHNTINRLLEAGYE-YI 298

Query: 411 G 411
           G
Sbjct: 299 G 299


>gi|254478015|ref|ZP_05091399.1| radical SAM domain protein [Carboxydibrachium pacificum DSM 12653]
 gi|214036019|gb|EEB76709.1| radical SAM domain protein [Carboxydibrachium pacificum DSM 12653]
          Length = 357

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/201 (11%), Positives = 68/201 (33%), Gaps = 17/201 (8%)

Query: 176 VTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL--SQVVDEARKLIDNGVCEITLLGQNVN 233
           +   +     C   C +C +  +        +   ++V+ A++    G   + L      
Sbjct: 59  LRGLIEFSSYCKNDCFYCGLRRSNQNAQRYRMQEDEIVEVAKRAYQMGYRTVVLQS---- 114

Query: 234 AWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHL 293
              G+ +   K     ++  +  +  +           D       A  D         +
Sbjct: 115 ---GEDMYYTKDRLCSIIKKIKRVVDVAITLSIGERSYDEYKAFKDAGADR------FLM 165

Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
             ++ ++++ +  +   +     + +  ++++     + + F++G PG+T DD    + L
Sbjct: 166 RFETSNEKLYRKYHPGMSFENRIECLKWLKNL--GYELGTGFLIGLPGQTLDDLAQDIIL 223

Query: 354 VDKIGYAQAFSFKYSPRLGTP 374
           V ++         + P   TP
Sbjct: 224 VKELDADMIGIGPFIPHPQTP 244


>gi|293373214|ref|ZP_06619576.1| radical SAM domain protein [Bacteroides ovatus SD CMC 3f]
 gi|299149445|ref|ZP_07042502.1| radical SAM domain protein [Bacteroides sp. 3_1_23]
 gi|292631862|gb|EFF50478.1| radical SAM domain protein [Bacteroides ovatus SD CMC 3f]
 gi|298512632|gb|EFI36524.1| radical SAM domain protein [Bacteroides sp. 3_1_23]
          Length = 350

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/216 (13%), Positives = 63/216 (29%), Gaps = 21/216 (9%)

Query: 169 GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI-EISR-SLSQVVDEARKLIDNGVCEIT 226
            +  K  +   + I   C   C +C +       E  R S   +++  ++  + G     
Sbjct: 45  HFGNKIYIRGLIEISNCCRNNCYYCGIRKGNPNIERYRLSRESILNCCKQGYELGFRTFV 104

Query: 227 LLGQNVNAWRGKGLDGEKCTFSDLLYSLS---EIKGLVRLRYTTSHPRDMSDCLIKAHGD 283
           L G    A     ++             +    +    R  Y        +  L++    
Sbjct: 105 LQGGEDPALTNDQIEMTVARIRQEYPDCAITLSLGEKSREAYERFFRAGANRYLLRHETY 164

Query: 284 LDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGET 343
            ++    LH    SG                  Q +  ++ +       +  +VG PG+T
Sbjct: 165 NELHYRQLHPAEMSG--------------KRRLQCLADLKEI--GYQTGTGIMVGSPGQT 208

Query: 344 DDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            +     +  ++K+         + P   TP +   
Sbjct: 209 VEHIIEDLLFIEKLRPEMIGIGPFLPHHDTPFAEYP 244


>gi|293394331|ref|ZP_06638631.1| radical SAM domain protein [Serratia odorifera DSM 4582]
 gi|291423309|gb|EFE96538.1| radical SAM domain protein [Serratia odorifera DSM 4582]
          Length = 744

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 53/330 (16%), Positives = 103/330 (31%), Gaps = 61/330 (18%)

Query: 159 KFERLSIVDGGYNR---KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEA 214
            ++R+     G  R      +   + I  GC   C+FC +    G  I SRS   ++ E 
Sbjct: 376 PYQRVPHPSYGEARIPAYDMIRFSVNIMRGCYGGCSFCSITEHEGRIIQSRSEDSIIREI 435

Query: 215 RKLIDNGVCEITLLGQ------------------NVNAWRGKGLDGEKCTFSD------- 249
            ++ D       ++                         R   +  E CT+ D       
Sbjct: 436 EEIRDKVPGFTGVISDLGGPTANMYMLRCTNPRAEQTCRRASCVYPEICTYMDTNHEPTI 495

Query: 250 -LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSM 306
            L     E++G+ ++   +    D++    +   +L    +  YL +  +      L  M
Sbjct: 496 KLYRRARELEGVKKILIASGVRYDLAVEDPRYIKELATHHVGGYLKIAPEHTETGPLSKM 555

Query: 307 NRR--HTAYEYRQIIDRI-RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY--AQ 361
            +    +   ++Q+ D   +    +  +   FI   PG  D+D       + K  +   Q
Sbjct: 556 MKPGMGSYDRFKQLFDHYSKQAGKEQYLIPYFISSHPGTRDEDMVNLALWLKKNRFRLDQ 615

Query: 362 AFSFKYSPRLGTPGSNMLEQVD--------ENV---KAERLLCLQKKLREQQVSFN---- 406
             +F  SP   +       +          E+V   + +R   L K L       N    
Sbjct: 616 VQNFYPSPMANSTTMYYSGKNPLSKVGYKTEDVFIPRGDRQRRLHKALLRYHDPANWALI 675

Query: 407 ---------DACVGQIIEVLIEKHGKEKGK 427
                       +G   E L+     ++ +
Sbjct: 676 RGALEEMGMKHLIGSRRECLVPAPSIDEQR 705


>gi|218670664|ref|ZP_03520335.1| coproporphyrinogen III oxidase [Rhizobium etli GR56]
          Length = 231

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 31/196 (15%), Positives = 63/196 (32%), Gaps = 16/196 (8%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C   C +C           + + Q    A   +        + G          L G   
Sbjct: 33  CAAKCPYC---DFNSHVRHQPVDQ-ERFAAAFLKETAAVRAMSGPKTVTS--IFLGGGTP 86

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY-------LHLPVQSG 298
           +        + + G+ R  +      +++     +  + +    Y       + L VQ+ 
Sbjct: 87  SLMQPETVAAILDGIAR-HWHVPDGIEITMEANPSSVEAERFRGYRAAGVNRVSLGVQAL 145

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           +DR LK + R H   +  + I   R + P ++   D I   P +T +D+   +       
Sbjct: 146 NDRDLKFLGRLHDVADALKAIVLARDIFPRMSF--DLIYARPDQTVEDWERELKHAIAYA 203

Query: 359 YAQAFSFKYSPRLGTP 374
                 ++ +   GTP
Sbjct: 204 VDHLSLYQLTIEEGTP 219


>gi|220905712|ref|YP_002481023.1| Radical SAM domain-containing protein [Cyanothece sp. PCC 7425]
 gi|219862323|gb|ACL42662.1| Radical SAM domain protein [Cyanothece sp. PCC 7425]
          Length = 874

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 53/323 (16%), Positives = 97/323 (30%), Gaps = 32/323 (9%)

Query: 111 QAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGY 170
           Q   E +L     +  V  PQ Y    +           V     V        I    Y
Sbjct: 187 QLSREALLLDLAQIPGVYVPQFYDMAADGSVHPNRADVPVRILRRVATPLPEYQIGLVPY 246

Query: 171 NRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLG 229
            +       + I+ GC + C FC               QVV+   K +   G  E +LL 
Sbjct: 247 VQTVHDRLTVEIRRGCTRGCRFCQPGMLTRPARDVDPDQVVEAIEKGMRATGYNEFSLLS 306

Query: 230 QNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMP 289
                              ++   L      + L   +       + +    G       
Sbjct: 307 -----LSCSDYLALPAVGMEIKNRLK--DENITLSLPSQRVDRFDENIANIIGGTRQ--S 357

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDD--- 346
            +    ++G+ R+   +N+  T  E  + +        D  +   F++G PGETD D   
Sbjct: 358 GITFAPEAGTQRLRDIINKGLTNEELLRGVKTAYEQGWD-KVKLYFMIGLPGETDADVLG 416

Query: 347 FRATMDLV---------DKIGYAQAFSFKYSPRLGTP--------GSNMLEQVDENVKAE 389
              T+  +          +I +       ++P+  TP             +Q     +  
Sbjct: 417 IAETVRWLQRECYLPGRKRISFT-LTISNFTPKPHTPFQWHSVSTAEFSRKQTLLKEEFR 475

Query: 390 RLLCLQKKLREQQVSFNDACVGQ 412
           R+  L+    + ++S  +  VG+
Sbjct: 476 RIKGLKANFTDVRISAMEDFVGR 498


>gi|307151102|ref|YP_003886486.1| Radical SAM domain-containing protein [Cyanothece sp. PCC 7822]
 gi|306981330|gb|ADN13211.1| Radical SAM domain protein [Cyanothece sp. PCC 7822]
          Length = 534

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 52/268 (19%), Positives = 102/268 (38%), Gaps = 25/268 (9%)

Query: 177 TAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR 236
              + +   C + C FC+  Y      + SL   +  A +        + LLG +V    
Sbjct: 222 IYMVEVVRSCPEMCRFCLASYLTLPFRTASLESSLIPAIEKGLKVTDRLGLLGASVTQH- 280

Query: 237 GKGLDGEKCTFSDLLYSLSEIK-GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPV 295
                     F  LL  L++ +   +RL   +     +++ L       D     + + V
Sbjct: 281 --------PEFEALLDYLNQPQYDPIRLSIASVRTNTVTEKLASTLAKKDT--RSITIAV 330

Query: 296 QSGSDRILKSMNRR-HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           +SGS++I K +N++   +   +  ++        I      +VG PGE D D   T+ ++
Sbjct: 331 ESGSEKIRKMINKKLSNSEIIQAAVNAKAGGLKGIKFYG--MVGLPGEEDTDVEETVKML 388

Query: 355 DKIGYA------QAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFN-D 407
             +               + P+  TP       V+   K  RL  L+K+LR Q + F  +
Sbjct: 389 LDVKKTAPGLRLTLGCSTFVPKSHTPFQWFG--VNREAKK-RLKGLEKQLRSQGIEFRPE 445

Query: 408 ACVGQIIEVLIEKHGKEKGKLVGRSPWL 435
           +    +I+ LI +  +   +++  +   
Sbjct: 446 SYNWSVIQALISRGDRRVSQVLELTREY 473


>gi|123969250|ref|YP_001010108.1| lipoyl synthase [Prochlorococcus marinus str. AS9601]
 gi|123199360|gb|ABM71001.1| lipoic acid synthetase [Prochlorococcus marinus str. AS9601]
          Length = 297

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 32/208 (15%), Positives = 67/208 (32%), Gaps = 11/208 (5%)

Query: 166 VDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEI 225
            + G     G   FL +  GC + C +C + + R        ++    A  +    +  +
Sbjct: 47  PNIGECFASGTATFLIMGPGCTRACPYCDIDFDRSK-RELDPTEPYRLAEAVYRMQLKHV 105

Query: 226 TLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLD 285
            +   N    R    DG    F + +Y + +      +             L K      
Sbjct: 106 VITSVN----RDDLEDGGASQFFECVYQVRKKSPETTIELLIPDLCGNWKALEKVLDSNP 161

Query: 286 VLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDD 345
            ++ +    V      + K +  +       +++ R R   P +   S F++G  GE D+
Sbjct: 162 NVLNHNIETV----PALYKKVRPQGKYERTLELLKRTREYSPKVYTKSGFMLGL-GEKDE 216

Query: 346 DFRATMDLVDKIGYAQAFSFKY-SPRLG 372
           +  + +  +           +Y SP   
Sbjct: 217 EVLSLLKDLKTNSVDIVTIGQYLSPGPN 244


>gi|186472592|ref|YP_001859934.1| lipoic acid synthetase [Burkholderia phymatum STM815]
 gi|184194924|gb|ACC72888.1| lipoic acid synthetase [Burkholderia phymatum STM815]
          Length = 326

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 45/272 (16%), Positives = 85/272 (31%), Gaps = 19/272 (6%)

Query: 103 VVVAGCVAQAEGEEILRR------SPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSV 156
           V   G       E++ R           +V+  P      P + E    G   +  ++ +
Sbjct: 13  VTALGQHGSRSREKLARIPVKIVPLERADVLPKPPWLRARPMMSETV-TGMASILREHRL 71

Query: 157 EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARK 216
               E     + G    +    F+ +   C + C FC V    G  +     +    A  
Sbjct: 72  HSVCEEAMCPNIGECFAQRTATFMILGGICTRRCAFCDV--AHGRPLPPDDDEPARLADA 129

Query: 217 LIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDC 276
           +   G+  + +   +    R    DG    FS  +  L E    +R+   T   R   D 
Sbjct: 130 VAALGLRYVVITSVD----RDDLRDGGAAHFSRCVALLRERVPGIRVEVLTPDFRGRIDR 185

Query: 277 LIKAH-GDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDF 335
            + A       +  +    V S    + ++            ++ R++     I   S  
Sbjct: 186 ALDALSAAWPDVFNHNVETVPS----MYRAARAGADYRGSLALLRRVKQANDAIVTKSGL 241

Query: 336 IVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           +VG  GE+D+    TM  + +         +Y
Sbjct: 242 MVGL-GESDEALLQTMRDIREHEVDVLTIGQY 272


>gi|84386312|ref|ZP_00989340.1| coproporphyrinogen III oxidase [Vibrio splendidus 12B01]
 gi|84378736|gb|EAP95591.1| coproporphyrinogen III oxidase [Vibrio splendidus 12B01]
          Length = 463

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 57/340 (16%), Positives = 111/340 (32%), Gaps = 34/340 (10%)

Query: 127 VVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVD----GGYNRKRGVTAFLTI 182
           V   Q      E+L +  +      +  +  +  E  ++ D         +R ++ ++ I
Sbjct: 6   VTTNQQIVWDQEILNKYNYSGPRYTSYPTALEFHEAFTVADYDMACTQYPERPLSLYVHI 65

Query: 183 QEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG 242
              C K C +C          S    + +D     I        L G+ V         G
Sbjct: 66  PF-CHKLCYYCGCNKVITRH-SHKADEYLDVIEHEIRQ--RASLLNGREVTQLH---FGG 118

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL-------MPYLHLPV 295
              TF      ++ +  ++R  +  +   ++S  +     +LDVL          L + V
Sbjct: 119 GTPTF-LTKTQITRLMMILREEFNFTADAEISIEVDPREIELDVLDHLRNEGFNRLSIGV 177

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS-DFIVGFPGETDDDFRATMDLV 354
           Q  +  + K +NR         ++ R + +      ++ D I G P +T   F  T+  V
Sbjct: 178 QDFNKEVQKLVNREQDEEFIIAMVKRAKEL--GFRSTNLDLIYGLPKQTQALFAETLKQV 235

Query: 355 DKIGYAQAFSFKYSPRLGTPGSNM---LEQVDENVKAERLLCLQKKLREQQVSFNDACVG 411
            ++   +   F Y+       +      E + E    E++  LQ  +     +     +G
Sbjct: 236 LEMKPGRLSVFNYAHMPQLFAAQRKIKDEDLPEP--KEKMAILQDTIETLTGAGYQ-FIG 292

Query: 412 QIIEVLIEKH---GKEKGKLVGRSPWLQSVVLNSKNHNIG 448
                L E      + +G L       Q      +   IG
Sbjct: 293 MDHFALPEDELAVAQREGILH---RNFQGYTTQGEADLIG 329


>gi|284928663|ref|YP_003421185.1| Fe-S oxidoreductase [cyanobacterium UCYN-A]
 gi|284809122|gb|ADB94827.1| Fe-S oxidoreductase [cyanobacterium UCYN-A]
          Length = 533

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 47/268 (17%), Positives = 101/268 (37%), Gaps = 25/268 (9%)

Query: 177 TAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR 236
              + +   C + C FC+V Y         ++ +       I+ G+     +G    +  
Sbjct: 224 IYMVEVVRSCPEMCRFCLVSYLNLPFR---IADLNTSLIPNIEKGLKVTNRIGLLGPSIT 280

Query: 237 GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQ 296
                G    + +           +R+   +     +++ L K           + + V+
Sbjct: 281 QHPEFGNLLNYLNQPKY-----DDIRVSIASVRANTVTEKLAKLLSSRKT--KSITIAVE 333

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI-AISSDFIVGFPGETDDDFRATMDLVD 355
           SGS +I K++N++    E       I +    +  +    +VG PGE ++D   T+ ++D
Sbjct: 334 SGSPKIRKNINKKLDNDEIISAA--INAKIGGLKNLKLYGMVGLPGENEEDIEQTISMLD 391

Query: 356 KIGYA------QAFSFKYSPRLGTPGSNM-LEQVDENVKAERLLCLQKKLREQQVSFN-D 407
            I  A            + P+  TP   + + ++      +RL  L+K L ++++ F  +
Sbjct: 392 SIQKAAQGLKITFGCSTFVPKAHTPFQWLGVNKLS----QKRLKFLEKVLGKRRIEFRPE 447

Query: 408 ACVGQIIEVLIEKHGKEKGKLVGRSPWL 435
           +    II+ LI +  +   KL   +   
Sbjct: 448 SYNWSIIQALISRGDRRLSKLFKLTRSY 475


>gi|261350353|ref|ZP_05975770.1| radical SAM domain protein [Methanobrevibacter smithii DSM 2374]
 gi|288861136|gb|EFC93434.1| radical SAM domain protein [Methanobrevibacter smithii DSM 2374]
          Length = 514

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 56/335 (16%), Positives = 109/335 (32%), Gaps = 58/335 (17%)

Query: 77  AEKVYSFLGRIRN----LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT 132
            E  ++ L  I+     LK     E   L++    C A A     +  S  ++V V  + 
Sbjct: 81  EEDYFNVLKMIKQSGIPLKRKDRSENDPLIIAGGPC-ATANP---MPLSDYIDVFVIGEG 136

Query: 133 YYRLPELLERARFGK--------------------RVVDTDYSVEDKFERLSIVD----G 168
              + + L+R    K                    ++   D           I+      
Sbjct: 137 EVTINKFLDRYLENKNLDNFLDMDGIYIPEFNNNAKIALIDDMKNAYHITQPIITKTDKE 196

Query: 169 GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITL 227
            Y      +  L +  GC + C FC+  Y        ++ ++VD A K  +N  + +ITL
Sbjct: 197 DYKTVFSDSIMLNVSRGCTRGCRFCMSSYLYRPLRETTIKELVDIALKTRENTNLNKITL 256

Query: 228 LGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL 287
           +G  V  +    L+G         + ++           +     +S   ++        
Sbjct: 257 IGAAVGDYY--DLEGLTTALESEGFQIA---------TPSLRIDSLSRETLETLKKSG-- 303

Query: 288 MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP-DIAISSDFIVGFPGETDDD 346
           +  + +  +S S    +            +I   I++    D  I   F++G P E+ +D
Sbjct: 304 LKSITIAPESISTLRERINKS----ISDEKIFSVIKNAVDLDFNIKLYFLIGIPYESKED 359

Query: 347 FRATMDLVDKI-------GYAQAFSFKYSPRLGTP 374
                + ++KI        Y +       P+  TP
Sbjct: 360 IEELANYIEKIANMHKNRKYIKFSINPVIPKPQTP 394


>gi|261403497|ref|YP_003247721.1| hypothetical protein Metvu_1386 [Methanocaldococcus vulcanius M7]
 gi|261370490|gb|ACX73239.1| conserved hypothetical protein [Methanocaldococcus vulcanius M7]
          Length = 340

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 44/253 (17%), Positives = 79/253 (31%), Gaps = 21/253 (8%)

Query: 139 LLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTF-CVVPY 197
           ++  +    +++D  Y       +  +      ++R     +    GC    T  C+   
Sbjct: 15  IIMLSDEDIKIIDEIYKEGYLIAQYGVYVKKKYKERVFKIPVDAGFGCPNKTTGGCIFCP 74

Query: 198 TRGIEISRS--------LSQVVDEARKLIDNGVCEITLL---GQNVNAWRGKGLDGEKCT 246
             G  IS            Q+  +     + G+ +  +    G N  A   K    E   
Sbjct: 75  DMGRPISVRYCDVQLSLKDQIEKQIEIQKNKGIKKFYVYFYPGTNTYAPIEKLK--EIWD 132

Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306
           FS     +  +    R         D+    +K   D+     ++ L VQ+   + LK +
Sbjct: 133 FSLSYKEVIGLSIGTRPDCLEEEKLDILGEYVKKGYDI-----WIDLGVQTMHQKTLKIL 187

Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
           NR H   +    I         I +    I+G P ET DD   T  ++  +       + 
Sbjct: 188 NRGHNVSDTITAIQNCHEK--GIKVCGHIILGLPNETWDDMMETAKILSSLKIDAVKIYP 245

Query: 367 YSPRLGTPGSNML 379
                GT    M 
Sbjct: 246 LVVIKGTKLEEMY 258


>gi|205375208|ref|ZP_03227999.1| lipoyl synthase [Bacillus coahuilensis m4-4]
          Length = 307

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 33/217 (15%), Positives = 79/217 (36%), Gaps = 13/217 (5%)

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
           +  ++V ++ +  +I +    R+     F+ + + C + C FC V      E+   L++ 
Sbjct: 34  NNLHTVCEEAKCPNIHECWGTRR--TATFMILGDVCTRACRFCAVKTGLPNEL--DLAEP 89

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270
              A  +    +  + +        R    DG    F++ + ++        +    S  
Sbjct: 90  ERVADSVQLMNLKHVVVTAV----ARDDLKDGGAYVFAETVRAIRRKNPFTTIEVLPSDM 145

Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330
             + D +         ++ +    V+  + R+      ++      + + R + + P+I 
Sbjct: 146 GGVYDNVKMLMDAKPDILNHNIETVERLTPRV--RARAKYQRS--LEFLSRAKELYPEIP 201

Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
             S  +VG  GET ++   TMD +           +Y
Sbjct: 202 TKSSIMVGL-GETKEEIIQTMDDLRAHNVDIMAIGQY 237


>gi|94970162|ref|YP_592210.1| radical SAM family Fe-S protein [Candidatus Koribacter versatilis
           Ellin345]
 gi|94552212|gb|ABF42136.1| Fe-S protein, radical SAM family [Candidatus Koribacter versatilis
           Ellin345]
          Length = 490

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 54/335 (16%), Positives = 109/335 (32%), Gaps = 42/335 (12%)

Query: 47  MFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVA 106
           +   +  E +   D+ DL+V+                    R  + +         V + 
Sbjct: 53  VLTDEHVEPLTLEDNPDLVVI------------QVYITNAYRAYRIADHYRKRGAFVCLG 100

Query: 107 GCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIV 166
           G    +   E    +   ++ +GP      P+ L   R G        +     ER    
Sbjct: 101 GLHVTSMPHEAAEHAD--SIFLGPGEQ-IFPQFLTDFRAGNPQRLYASTSGRTLERAPSP 157

Query: 167 DGGYNRKRGVTAF--LTIQEGCDKFCTFC---VVPYTRGIEISRSLSQVVDEARKLIDNG 221
                ++        + +  GC + C FC             ++ + + + E  +L    
Sbjct: 158 RRDLIKRHCYLVPNSIVVTRGCPQHCDFCYKDAFYQGGKTFYTQRVDEALAEISRLPG-- 215

Query: 222 VCEITLLGQNVNAWRG--KGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIK 279
              +  L  ++   R   +GL         L    + +  ++R              LI+
Sbjct: 216 -RHVYFLDDHMLGDRRFAEGLFDGMKGMRRLFQGAATVDSILR------------GNLIE 262

Query: 280 AHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT-AYEYRQIIDRIRSVRPDIAISSDFIVG 338
              +    +  + +  ++ +   LK  N+R     +Y+ + DR+ S+   I I+  F+ G
Sbjct: 263 RAAEAG--LRSIFVGFETLAPANLKQCNKRQNLGRDYKAVTDRLHSL--GIMINGSFVFG 318

Query: 339 FPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
              +  D FR T+D   + G   A     +P  GT
Sbjct: 319 MDDDGPDVFRRTVDWAVEHGVTTATFHIQTPYPGT 353


>gi|325677950|ref|ZP_08157592.1| radical SAM domain protein [Ruminococcus albus 8]
 gi|324110504|gb|EGC04678.1| radical SAM domain protein [Ruminococcus albus 8]
          Length = 415

 Score = 58.0 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 33/197 (16%), Positives = 62/197 (31%), Gaps = 9/197 (4%)

Query: 185 GCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK 244
           GC   C FC      G +       V     + +        +    +  + G      +
Sbjct: 13  GCPHKCAFCDQNAITGKQKLPHKDDVEKACMQALSQVDD---ISDTEIAFFGGSFTAIPR 69

Query: 245 CTFSDLLYSLSEIKGLVRL--RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
               +LL +  +  G  R      ++ P  ++  ++       V    + L  QS SD +
Sbjct: 70  DYMLELLTAAKKFVGGGRFKGIRISTRPDYINAEILDILKSYGVTA--IELGAQSMSDEV 127

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           L++  R H+A + RQ    IR       +    +VG           T + +  I     
Sbjct: 128 LEANERGHSAEDVRQASRLIREY--GFELGLQMMVGLYKSGHQQEDETFNEIMAIRPDTV 185

Query: 363 FSFKYSPRLGTPGSNML 379
             +       T  + +L
Sbjct: 186 RIYPVVILKNTRLAKLL 202


>gi|220934411|ref|YP_002513310.1| oxygen-independent coproporphyrinogen III oxidase [Thioalkalivibrio
           sp. HL-EbGR7]
 gi|219995721|gb|ACL72323.1| oxygen-independent coproporphyrinogen III oxidase [Thioalkalivibrio
           sp. HL-EbGR7]
          Length = 465

 Score = 58.0 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 53/242 (21%), Positives = 91/242 (37%), Gaps = 20/242 (8%)

Query: 174 RGVTAFLTIQEGCDKFCTFC----VVPYTRGIEI---SRSLSQV-VDEARKLIDNGVCEI 225
           R ++ ++ I   CD  C +C    VV   RG       R   ++ +  A       V ++
Sbjct: 57  RPLSLYVHIPF-CDTVCYYCACNKVVTKDRGRARPYLDRLYREIGLQAALFDNSRPVEQL 115

Query: 226 TLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLD 285
            L G        + +       S     L +  G   +          +  L++  G   
Sbjct: 116 HLGGGTPTFISHEEMTELMTILSSHFQLLDDDTGEYGIEIDPREVGGDTLALLRRLG--- 172

Query: 286 VLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI-AISSDFIVGFPGETD 344
                L L VQ    R+ +++NR   A +   +++  R V     +IS D I G P +T 
Sbjct: 173 --FNRLSLGVQDFDPRVQRAVNRIQPASQTLHVLEEARQV--GFRSISVDLIYGLPLQTP 228

Query: 345 DDFRATMDLVDKIGYAQAFSFKY--SPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQ 402
             F  T++ + + G  +   F Y   P    P   + EQ D    A+RLL LQ+ + +  
Sbjct: 229 ASFAVTVERMIEAGPDRISVFNYAHLPERFKPQRRINEQ-DLPSPADRLLILQQTIAQLT 287

Query: 403 VS 404
            +
Sbjct: 288 EA 289


>gi|187780019|ref|ZP_02996492.1| hypothetical protein CLOSPO_03615 [Clostridium sporogenes ATCC
           15579]
 gi|187773644|gb|EDU37446.1| hypothetical protein CLOSPO_03615 [Clostridium sporogenes ATCC
           15579]
          Length = 282

 Score = 58.0 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 28/199 (14%), Positives = 73/199 (36%), Gaps = 17/199 (8%)

Query: 172 RKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQN 231
             +G   F+ +   C + C FC V    G        + +  A+ + + G+    +    
Sbjct: 47  HNKGTATFMILGSVCTRNCRFCNVK--TGKAQCVDKEEPLHVAQAVKELGLKHAVITSVT 104

Query: 232 VNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL 291
               R    DG    F++++ ++ ++     +       +   + L     +   ++ + 
Sbjct: 105 ----RDDLEDGGASQFAEVIRAIRKLTPNTTIEVLIPDLKGNWEALKVILDEKPEILNH- 159

Query: 292 HLPVQSGSDRILKSMNRR---HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFR 348
              +++ S   L    R    +T     +++ +++ +  +I   S F+VG  GE +++  
Sbjct: 160 --NIETIS--GLYKKVRPEAIYTRS--LELLRKVKEIDKNILTKSGFMVGL-GEKEEEVI 212

Query: 349 ATMDLVDKIGYAQAFSFKY 367
             +  + K         +Y
Sbjct: 213 ELLKDLRKYQCDIVTIGQY 231


>gi|116873096|ref|YP_849877.1| hypothetical protein lwe1680 [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|116741974|emb|CAK21098.1| conserved hypothetical protein [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 321

 Score = 58.0 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 38/195 (19%), Positives = 70/195 (35%), Gaps = 19/195 (9%)

Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDE--ARKLIDNGVCEITLLG-----QNVNAWRGKGL 240
             CTFC    +     +R+L   V     R  +     +   +       N +A   +  
Sbjct: 52  GGCTFCSAAGSGDFAGNRALDLKVQFQQVRDKMQTKWKDGKCIAYFQAFTNTHAPVAE-- 109

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL-DVLMPYLHLPVQSGS 299
                   +   ++    G+V L    + P  + D +++   +L +    +L L +QS  
Sbjct: 110 ------LREKFETVLNEPGVVGLSI-ATRPDCLPDDVVEYLAELNERTYLWLELGLQSAH 162

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
           D   + +NR H    Y + + +++    +I I +  I G P ET +    T   V + G 
Sbjct: 163 DETGRLINRAHDYDCYLEGVRKLQK--HNIRICTHIINGLPKETPEMMMETAQKVVESGV 220

Query: 360 AQAFSFKYSPRLGTP 374
                       GTP
Sbjct: 221 DGIKIHLLHLLKGTP 235


>gi|318041938|ref|ZP_07973894.1| oxygen independent coprophorphyrinogen III oxidase 1 [Synechococcus
           sp. CB0101]
          Length = 453

 Score = 58.0 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 40/232 (17%), Positives = 78/232 (33%), Gaps = 34/232 (14%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR-----GKGL 240
           C   C +C          S             +     E+ L+   +   R       G 
Sbjct: 64  CRHACWYCGCNRITTQLGS-------KVVEPYLAALAKELELISAAMPQRRRLAQLHWGG 116

Query: 241 DGEKCTFSDLLYSLSE-IKGLVRLRYTTSHPRDMSDCLI--KAHGDLDVL-MPYLHLPVQ 296
                  +D    L + I+    L        +++   +   A   L  L    +   +Q
Sbjct: 117 GTPNYLNADETRQLWQLIERHFDLEPDLEASIEVNPEFLSRDAALQLRALGFNRISFGIQ 176

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
                + K++NR     + R+++  +R      +++ D I G P +T D FR T++LV +
Sbjct: 177 DADPEVQKAVNRVVPVEQLRRVMGWLREASF-ASVNVDLICGLPLQTPDRFRTTLELVQE 235

Query: 357 IGYAQAFSFKYSPRLGTPGSNMLEQVDENVK---------AERLLCLQKKLR 399
           +   +   F +        + + EQ+    K          ER++ L+   R
Sbjct: 236 LRPDRISLFSF--------AYLPEQLPLQRKIAADDLPSQRERIVMLEDAQR 279


>gi|303257941|ref|ZP_07343950.1| putative oxygen independent coproporphyrinogen III oxidase
           [Burkholderiales bacterium 1_1_47]
 gi|302859284|gb|EFL82366.1| putative oxygen independent coproporphyrinogen III oxidase
           [Burkholderiales bacterium 1_1_47]
          Length = 434

 Score = 58.0 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 38/219 (17%), Positives = 80/219 (36%), Gaps = 20/219 (9%)

Query: 170 YNRKRGVTAFLTIQEGCDKFCTFCV--VPYTRGIEISRSLSQ-VVDEARKLIDNGVCEIT 226
             R R   A++ +   C+  C +C+  +   R  E S + +  ++ E +   D  V +  
Sbjct: 43  KPRTRRTVAYINVPY-CETRCLYCLFYIKPYRNKEESNAFADTLIKELQLWSDKPVQK-- 99

Query: 227 LLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDC-------LIK 279
             G+ V+A    G  G           +  I   VR     ++  +++           K
Sbjct: 100 --GEPVHAVYFGG--GTPTALEAC--DIERIIKAVRRYLPLANDCEITYEGRLSGFGTDK 153

Query: 280 AHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGF 339
               L        L VQS   +I +++ RR       + ++++ S     A+  D I GF
Sbjct: 154 MEAALAGGANRFSLGVQSFDTKIRQAVGRRSDKETLIRQLEKLMSY-DQAAVVIDLIYGF 212

Query: 340 PGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           P +T + ++  + +  ++       ++      +P    
Sbjct: 213 PFQTLETWKEDLRIGRELNLDGIDCYQLRVFEKSPLYKY 251


>gi|293375450|ref|ZP_06621731.1| radical SAM domain protein [Turicibacter sanguinis PC909]
 gi|292646003|gb|EFF64032.1| radical SAM domain protein [Turicibacter sanguinis PC909]
          Length = 572

 Score = 58.0 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 45/242 (18%), Positives = 78/242 (32%), Gaps = 16/242 (6%)

Query: 146 GKRVVDTDYSVEDKFERLSIV--DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           G+ +   +  + D  E LS    +           ++    GC   C +C+         
Sbjct: 144 GELIKAAEAPILDPKEILSPFYFEEDIPHLPNRIQYIETSRGCPYSCQYCLAS-VDNKVR 202

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
              +  V +E R L+ +G      L +  N  +   L+       + L       G    
Sbjct: 203 YFDIENVKNEIRYLMKHGAKTFKFLDRTFNINKTYALNIFDFIIEEHL------PGTQFQ 256

Query: 264 RYTTSHPRDMSDCLIKAHGDL-DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
              T+    M   LI    +     +    + +QS  +   K + RR    +    I RI
Sbjct: 257 FEITADI--MPTELIDYLNEHAPEGLFRFEIGIQSTYELTNKLVKRRQNFDKLTTNILRI 314

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           +     I +  D I G P E  D F  + + V  +   +          GT    + +Q 
Sbjct: 315 KQG-GKIVLHLDLIAGLPEEPYDRFEQSFNDVFALRPEELQLGFLKMLRGT---GLRKQA 370

Query: 383 DE 384
           DE
Sbjct: 371 DE 372


>gi|291531040|emb|CBK96625.1| Coproporphyrinogen III oxidase and related Fe-S oxidoreductases
           [Eubacterium siraeum 70/3]
          Length = 480

 Score = 58.0 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 40/199 (20%), Positives = 75/199 (37%), Gaps = 7/199 (3%)

Query: 174 RGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ---VVDEARKLIDNGVCEITLLGQ 230
           R ++ +++I   C   C++C      G    + +     ++ +   +  + V   +L   
Sbjct: 156 RKISLYISIPF-CPSRCSYCSFISASGEGALKLIDDYFGLLLKELDIYADIVKRFSLKVD 214

Query: 231 NVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL-MP 289
            V    G            L+  L E   +  +R  T+               L    + 
Sbjct: 215 TVYIGGGTPTTLSASQLDRLIDKLGEFD-IANIREFTAEAGRPDTITEDKLRTLKNGGVR 273

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
            + +  QS +D +L+++ RRHT  +  +  D  R V  D  I+SD I G P ET+  F A
Sbjct: 274 RISINPQSMNDSVLEAVGRRHTVKQVCEAFDIARKVGFD-CINSDIIAGLPAETEHSFEA 332

Query: 350 TMDLVDKIGYAQAFSFKYS 368
           ++  + K+          S
Sbjct: 333 SLQQLCKLSPENITVHTLS 351


>gi|289578460|ref|YP_003477087.1| radical SAM protein [Thermoanaerobacter italicus Ab9]
 gi|289528173|gb|ADD02525.1| Radical SAM domain protein [Thermoanaerobacter italicus Ab9]
          Length = 354

 Score = 58.0 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 33/200 (16%), Positives = 72/200 (36%), Gaps = 11/200 (5%)

Query: 185 GCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK 244
           GC   C FC      G +         +E R+ I++ +  +    +   ++ G    G  
Sbjct: 16  GCPFKCVFCNQNSITGQQR----EITEEEVRQTIESHLKTLPRDAEIEVSFFGGSFTGIP 71

Query: 245 CTFSDLLYSLSEI---KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
               +    +++    KG +     ++ P  +   +++        +  + L VQS  + 
Sbjct: 72  QDMQNFYLGIAKEYLDKGKIDAIRLSTRPDYIDTKILQNLKRYQ--VSIIELGVQSMDEE 129

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
           +L    R HT+ +  + ++ IR    D  +    +VG PG+  +    T   + K+    
Sbjct: 130 VLLKSRRGHTSEDVVKAVNLIRQY--DFKLGLQIMVGLPGDNLEKSLNTAYKIVKLKPDF 187

Query: 362 AFSFKYSPRLGTPGSNMLEQ 381
              +       T    M ++
Sbjct: 188 VRIYPTLVIKNTYLERMYKE 207


>gi|222147319|ref|YP_002548276.1| coproporphyrinogen III oxidase [Agrobacterium vitis S4]
 gi|221734309|gb|ACM35272.1| oxygen-independent coproporphyrinogen III oxidase [Agrobacterium
           vitis S4]
          Length = 393

 Score = 58.0 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 35/228 (15%), Positives = 78/228 (34%), Gaps = 20/228 (8%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C   C +C           + + Q     +  +        + G          L G   
Sbjct: 26  CAAKCPYC---DFNSHVRHQKIDQP-RFTQAFLKEMETMRAMSGPKTVTS--IFLGGGTP 79

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY-------LHLPVQSG 298
           +  D     + ++G+ R  +T     +++        + +    Y       + L VQ+ 
Sbjct: 80  SLMDPATVGAILEGIAR-YWTVPRGIEITMEANPTSVEAERFRGYRSAGVNRVSLGVQAL 138

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           +D  LK + R H+  +  + +   R + P ++   D I   P +T  D+ A + L     
Sbjct: 139 NDADLKFLGRMHSVEDALKAVRLAREIFPRMSF--DLIYARPNQTIADWDAELKLAISYA 196

Query: 359 YAQAFSFKYSPRLGTPGSNMLEQ----VDENVKAERLLCLQKKLREQQ 402
                 ++ +   GTP   + +       +   A +L    +++ E++
Sbjct: 197 VDHLSLYQLTIEEGTPFFGLHKAGKIITPDEEHAAQLYEATQEITERE 244


>gi|207093503|ref|ZP_03241290.1| putative ATP-binding protein [Helicobacter pylori HPKX_438_AG0C1]
          Length = 82

 Score = 58.0 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 46/89 (51%), Gaps = 8/89 (8%)

Query: 132 TYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCT 191
              ++ +++ + +  +  +D D S        +     + +K  + + L I  GCDK C 
Sbjct: 2   NVSKISQVIHKEKAVEVAIDYDES--------AYAFEFFEKKAQIRSLLNISIGCDKKCA 53

Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDN 220
           +C+VP+TRG EIS  +  ++ EA KL +N
Sbjct: 54  YCIVPHTRGKEISIPMDLILKEAEKLANN 82


>gi|254390862|ref|ZP_05006073.1| radical SAM domain-containing protein [Streptomyces clavuligerus
           ATCC 27064]
 gi|197704560|gb|EDY50372.1| radical SAM domain-containing protein [Streptomyces clavuligerus
           ATCC 27064]
          Length = 685

 Score = 58.0 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 49/273 (17%), Positives = 82/273 (30%), Gaps = 33/273 (12%)

Query: 114 GEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDY-SVEDKFERLSIV------ 166
            +EIL R   V      +   R+P L  R+  G  V    +    D  E    V      
Sbjct: 157 PDEILARLDDVLA---RRDLDRIPNLAHRSGTGYTVNPRVFLPPADHPEYTEAVLRDLLD 213

Query: 167 DGGYNRKRGVTA----FLTIQEGCDKFCTFCVVPYTRG-IEISRSLSQVVDEARKLIDNG 221
             G  R  G  A     + IQ GC   C FC  P  +G     R L  V+ +   L D G
Sbjct: 214 FYGPERVTGPGAEVHVAVEIQRGCPYRCYFCTEPMVKGRRHRVRDLDVVMADITFLADRG 273

Query: 222 VCEITLL--GQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIK 279
           V  I L+    N+ +         +    +   ++     +    Y   +P      +  
Sbjct: 274 VSRIWLVCSEINIGSNALLFEMAARMRRLNRGRAV----PVHWTCYLLPNPPLARAEIRM 329

Query: 280 AHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI------IDRIRSVRPDIAI-- 331
                    P  +    S  D  L+     +      +        D        + +  
Sbjct: 330 LL--ESRFEPSWN-QFTSYHDENLRRTRVPYRTRHAIEAQIGWLEEDEAHRRAHGLPVPP 386

Query: 332 -SSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
              D  +G    T +    T+  ++++   + F
Sbjct: 387 RRLDMFLGNTYATPETVATTLRTINELRLGERF 419


>gi|254414629|ref|ZP_05028394.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Microcoleus chthonoplastes PCC 7420]
 gi|196178477|gb|EDX73476.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Microcoleus chthonoplastes PCC 7420]
          Length = 409

 Score = 58.0 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 36/205 (17%), Positives = 75/205 (36%), Gaps = 12/205 (5%)

Query: 176 VTAFLTIQEGCDKFCTFCVVP------YTRGIEISRSLSQVVDEARKLIDNGVCEITLLG 229
            +A++ I   C + C +C  P        RG   S ++ + V+   + I         L 
Sbjct: 5   HSAYIHIPF-CRRRCYYCDFPVSVVGDKARG-STSGTIEEYVEVLAQEIQTTPASTCSLS 62

Query: 230 QNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMP 289
             +    G          + +L +L++  G+      +      +  L +  G  D  + 
Sbjct: 63  -TIFFGGGTPSLLSTQQLNRILDTLAQQFGITTDAEISMEIDPGTFDLSQIKGYRDAGVN 121

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV-RPDIAISSDFIVGFPGETDDDFR 348
            + L VQ+  D +L    R H        ++ +R V  PD ++  D I G P +T + ++
Sbjct: 122 RVSLGVQAFQDELLGICGRSHQLNHIFTAVELLRQVEVPDWSL--DLISGLPTQTLEQWQ 179

Query: 349 ATMDLVDKIGYAQAFSFKYSPRLGT 373
            ++    ++       +  +    T
Sbjct: 180 ESLAAAIQLAPTHISCYDLTIEPVT 204


>gi|121593507|ref|YP_985403.1| coproporphyrinogen III oxidase [Acidovorax sp. JS42]
 gi|222110222|ref|YP_002552486.1| coproporphyrinogen iii oxidase [Acidovorax ebreus TPSY]
 gi|120605587|gb|ABM41327.1| oxygen-independent coproporphyrinogen III oxidase [Acidovorax sp.
           JS42]
 gi|221729666|gb|ACM32486.1| oxygen-independent coproporphyrinogen III oxidase [Acidovorax
           ebreus TPSY]
          Length = 460

 Score = 58.0 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 33/196 (16%), Positives = 69/196 (35%), Gaps = 20/196 (10%)

Query: 186 CDKFCTFC-----VVPYTRGIEI-----SRSLSQVVDEARKLIDNGVCEITLLGQNVNAW 235
           C+  C +C     +  +    E+     SR +   +  A   +   V ++   G      
Sbjct: 64  CESLCYYCACNKIITRHPERAEVYLRYLSREID--LHTAHCGVGQHVSQLHFGG---GTP 118

Query: 236 RGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPV 295
                DG +     L  S   + G            D +   +    +L      L   V
Sbjct: 119 TFLTDDGLRELMGMLRRSFVLVPGGEYSIEVDPRTVDEAR--LGLLAELG--FNRLSFGV 174

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
           Q     + K+++R   A +   ++D  R +  + +++ D I G P +T + F  T++ V 
Sbjct: 175 QDFDPEVQKAVHRIQPAEKVFALVDAARKLGFE-SVNVDLIYGLPRQTPESFDRTLEQVA 233

Query: 356 KIGYAQAFSFKYSPRL 371
           ++   +   + Y+   
Sbjct: 234 ELRPDRIALYAYAHLP 249


>gi|313140105|ref|ZP_07802298.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB
           41171]
 gi|313132615|gb|EFR50232.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB
           41171]
          Length = 420

 Score = 58.0 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 44/241 (18%), Positives = 85/241 (35%), Gaps = 27/241 (11%)

Query: 186 CDKFCTFC------VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
           C + C +C            G       + VV E R + D  +      G          
Sbjct: 4   CMRRCGYCDFNTYTATDMGAGASRGNYANMVVREMRLVRDWQLVH----GIEEPPVSTVF 59

Query: 240 LDGEKCTF---SDLLYSLSEIKGLVRL-----RYTTSHPRDMSDCLIKAHGDLDVLMPYL 291
             G   T     DL+  L  ++GL  +       T ++P  + +  I A  +    +  +
Sbjct: 60  FGGGTPTILPARDLVMMLDAVRGLWGIEPEAEITTEANPDTVDERYIGALAEGG--VTRV 117

Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351
              +QS    +LK+++R HT       +    + R  +  S D I G PGE+ DD+R ++
Sbjct: 118 SFGMQSAVPHVLKTLDRTHTPANVEAGVRA--ADRAGLRSSVDLIYGAPGESLDDWRDSV 175

Query: 352 DLVDKIGYAQAFSFKYSPRLGTP-----GSNMLEQVDENVKAERLLCLQKKLREQQVSFN 406
                +G     ++  +    T       +  L + D++ +A +            + + 
Sbjct: 176 RTAVDLGVNHVSAYALTVEPTTKMGRQIAAGTLPKPDDDDEAAKYEIADDLFAAAGLEWY 235

Query: 407 D 407
           +
Sbjct: 236 E 236


>gi|224282947|ref|ZP_03646269.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Bifidobacterium bifidum NCIMB 41171]
          Length = 469

 Score = 58.0 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 44/241 (18%), Positives = 85/241 (35%), Gaps = 27/241 (11%)

Query: 186 CDKFCTFC------VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
           C + C +C            G       + VV E R + D  +      G          
Sbjct: 53  CMRRCGYCDFNTYTATDMGAGASRGNYANMVVREMRLVRDWQLVH----GIEEPPVSTVF 108

Query: 240 LDGEKCTF---SDLLYSLSEIKGLVRL-----RYTTSHPRDMSDCLIKAHGDLDVLMPYL 291
             G   T     DL+  L  ++GL  +       T ++P  + +  I A  +    +  +
Sbjct: 109 FGGGTPTILPARDLVMMLDAVRGLWGIEPEAEITTEANPDTVDERYIGALAEGG--VTRV 166

Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351
              +QS    +LK+++R HT       +    + R  +  S D I G PGE+ DD+R ++
Sbjct: 167 SFGMQSAVPHVLKTLDRTHTPANVEAGVRA--ADRAGLRSSVDLIYGAPGESLDDWRDSV 224

Query: 352 DLVDKIGYAQAFSFKYSPRLGTP-----GSNMLEQVDENVKAERLLCLQKKLREQQVSFN 406
                +G     ++  +    T       +  L + D++ +A +            + + 
Sbjct: 225 RTAVDLGVNHVSAYALTVEPTTKMGRQIAAGTLPKPDDDDEAAKYEIADDLFAAAGLEWY 284

Query: 407 D 407
           +
Sbjct: 285 E 285


>gi|333030505|ref|ZP_08458566.1| cobalamin B12-binding domain protein [Bacteroides coprosuis DSM
           18011]
 gi|332741102|gb|EGJ71584.1| cobalamin B12-binding domain protein [Bacteroides coprosuis DSM
           18011]
          Length = 561

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 50/292 (17%), Positives = 100/292 (34%), Gaps = 36/292 (12%)

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           + + + L     ++  +L++ V G     E E  L     ++ V+  +  +   +L E  
Sbjct: 67  VRQTQTLIQLLKEKKPELIIFVGGPEVTYEPEFFLENW-EIDYVISGEGEFVSGQLFEAL 125

Query: 144 RFGKRVVDTDY----------SVEDKFERLSIVDGGYNRKRGVTA------FLTIQEGCD 187
           + G R VD              V+   E+L ++D  Y  +    A      +L    GC 
Sbjct: 126 QQGIREVDIPGVSYIGHISRTIVQADIEKLILLDSPYQLEEDKEALINRVVYLETSRGCP 185

Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTF 247
             C +C+    +G         + D    LI +    I  L         +  +  K   
Sbjct: 186 YQCQYCLSSLEKG-VRYFPKEYIYDNLSYLIQSDAKLIKFLD--------RTFNLNKTHT 236

Query: 248 SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIK--AHGDLDVLMPYLHLPVQSGSDRILKS 305
            ++   L     +   R   S   ++   L+       L+  +P  +   + G     + 
Sbjct: 237 YNVFNFL-----IENYRPNLSCQFEIYADLLDDEKIAFLNNNLPKDYFRFEIGIQSTYEP 291

Query: 306 MNRRHTAYEYRQIIDR-IRSVRPD--IAISSDFIVGFPGETDDDFRATMDLV 354
            N      +   ++ + I+ +     I +  D I G P ET + F+ + + V
Sbjct: 292 TNLEVKRRQDFDLLSKNIKLLMEGGKIDLHLDLIAGLPFETYERFKKSFNDV 343


>gi|325971936|ref|YP_004248127.1| radical SAM protein [Spirochaeta sp. Buddy]
 gi|324027174|gb|ADY13933.1| Radical SAM domain protein [Spirochaeta sp. Buddy]
          Length = 548

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 38/191 (19%), Positives = 67/191 (35%), Gaps = 14/191 (7%)

Query: 183 QEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG 242
             GC   C+FC            SL ++ +E   LI++ V E+ +L    N  + + L  
Sbjct: 182 TRGCPFHCSFCFESRGERSVRHFSLDRLEEELEYLIEHEVGEVYVLDPTFNIDKQRTL-- 239

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
                S L    + I  +  +R                      +   L + +QS    +
Sbjct: 240 --AILSLLQEKQASIHFVFEVRAELLDAALADA--------FATINCSLQIGLQSSDSAV 289

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           LK+ NR     ++ + I  +      I    D I+G P ++   F  ++D    +  +  
Sbjct: 290 LKAANRNFNPSQFAKKIQLLNQR--GIPFGLDLIIGLPHDSLAAFTKSLDYAMLLKPSNL 347

Query: 363 FSFKYSPRLGT 373
             F  S   GT
Sbjct: 348 DIFPLSLLPGT 358


>gi|21673904|ref|NP_661969.1| lipoyl synthase [Chlorobium tepidum TLS]
 gi|47117243|sp|Q8KDH2|LIPA_CHLTE RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|21647043|gb|AAM72311.1| lipoic acid synthetase [Chlorobium tepidum TLS]
          Length = 290

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 34/216 (15%), Positives = 69/216 (31%), Gaps = 15/216 (6%)

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           +S+          +      +G   FL +   C + C FC V       +     +    
Sbjct: 32  HSLHTVCRSAMCPNLHECWSKGTATFLLLGNVCTRSCRFCAVGTECRPAM-PDPEEPSKI 90

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
           A  +    +    L   N    R    DG    + + + ++ E+   V L          
Sbjct: 91  AEAVKTMKLRHAVLTSVN----RDDLADGGATHWVETIRAIREVNPGVSLECLIPDFSGN 146

Query: 274 SDCLIKAHGDLDVLMPYL--HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAI 331
              L     +L  ++ +    +P +  + R                +I+R +     +A 
Sbjct: 147 EQSLDLVMQELPEVLNHNIETVPSRYAAVRPQALY------ERSLAVIERAKRQFR-LAT 199

Query: 332 SSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
            S  +VG  GET+++  A++  +   G       +Y
Sbjct: 200 KSGMMVGM-GETEEELEASLHDLRGHGCDMVTIGQY 234


>gi|330447437|ref|ZP_08311086.1| radical SAM superfamily protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328491628|dbj|GAA05583.1| radical SAM superfamily protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 312

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 32/103 (31%), Positives = 46/103 (44%), Gaps = 9/103 (8%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +L L +Q+ +D+ LK +NR H    Y  I  R R++   I + +  IVG PG+T  D   
Sbjct: 141 WLELGLQTANDKTLKRINRGHDFACYEAITQRARAL--GIKVCTHLIVGLPGDTKADNID 198

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLL 392
           T++ V   G             G   S M     +  KAERL 
Sbjct: 199 TINKVVAAGVDGIKLHPLHIVEG---SKMG----QAFKAERLD 234


>gi|148380411|ref|YP_001254952.1| radical SAM domain protein [Clostridium botulinum A str. ATCC 3502]
 gi|148289895|emb|CAL84003.1| radical SAM superfamily protein [Clostridium botulinum A str. ATCC
           3502]
          Length = 363

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 39/210 (18%), Positives = 74/210 (35%), Gaps = 11/210 (5%)

Query: 176 VTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEI-TLLGQNVNA 234
           +      QEGC   C FC      G E    + +  +  R+ I+  +  I         +
Sbjct: 7   IIPIFVAQEGCPHNCVFCNQYKITG-EKDEMIDE--NYVRETIEAYIKTIDRENSTLEVS 63

Query: 235 WRGKGLDGEKCTFSDLLYSLSEI---KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL 291
           + G    G        L  +++    KG +   + ++ P  +   ++    +       +
Sbjct: 64  FFGGTFTGIPIEKQKSLLKVAKEYKDKGQIDYIHMSTRPDYIDREILDNLKEYS--ADII 121

Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351
            L VQS  D +L    R H+  E  +    IR       +    ++G PG+T      T+
Sbjct: 122 ELGVQSLDDEVLLKSGRGHSVEEVHRASKLIREY--GFTLGHQIMLGLPGDTFKKDIETV 179

Query: 352 DLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
               ++    A  +       TP  +ML++
Sbjct: 180 AKSLEMEPDIARIYPALVIKDTPMEDMLKK 209


>gi|17545041|ref|NP_518443.1| lipoyl synthase [Ralstonia solanacearum GMI1000]
 gi|22001759|sp|Q8Y2L3|LIPA_RALSO RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|17427331|emb|CAD13850.1| probable lipoyl synthase (lipoic acid synthase) (lipoate
           synthase)(lipoyl-acyl-carrier protein synthase) (sulfur
           insertion protein lipa) (lip-syn) [Ralstonia
           solanacearum GMI1000]
          Length = 333

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 34/210 (16%), Positives = 71/210 (33%), Gaps = 16/210 (7%)

Query: 161 ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS--QVVDEARKLI 218
           E  S  + G    +G   F+ + + C + C FC V + R       L   +  + A+ + 
Sbjct: 81  EEASCPNIGECFGKGTATFMIMGDKCTRRCPFCDVGHGRPD----PLDANEPENLAKTIA 136

Query: 219 DNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLI 278
              +  + +   +    R    DG    + D +    E+    R+       R   +  +
Sbjct: 137 QLRLNYVVITSVD----RDDLRDGGAQHYVDCISRTRELSPATRIEVLVPDFRGRLEKAL 192

Query: 279 KAH-GDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIV 337
                    +M +    V     R+ K            +++   ++  P++   S  +V
Sbjct: 193 DILQACPPDVMNHNMETV----PRLYKQARPGADYAHSLKLLKDFKARNPNLPTKSGLMV 248

Query: 338 GFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           G  GETD++    M  + +         +Y
Sbjct: 249 GL-GETDEEILEVMRDMREHDIDMLTIGQY 277


>gi|88858995|ref|ZP_01133636.1| hypothetical protein PTD2_08324 [Pseudoalteromonas tunicata D2]
 gi|88819221|gb|EAR29035.1| hypothetical protein PTD2_08324 [Pseudoalteromonas tunicata D2]
          Length = 728

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 50/323 (15%), Positives = 100/323 (30%), Gaps = 58/323 (17%)

Query: 161 ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLID 219
              S  D        +   + I  GC   C+FC +    G  I SRS   +++E  ++ D
Sbjct: 363 PHPSYGDAKIPAYDMIKTSVNIMRGCFGGCSFCSITEHEGRIIQSRSHESIINEIEQIRD 422

Query: 220 N--GVCEIT--LLGQNVNAWR----------------------GKGLDGEKCTFSDLLYS 253
              G   +   L G   N ++                         +D +     DL   
Sbjct: 423 KVPGFTGVISDLGGPTANMYKLRCKSEKAESTCRRLSCVYPDICNHMDTDHTPTIDLYRK 482

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRRHT 311
             ++KG+ ++   +    D++    +   +L    +  YL +  +   D  L  M +   
Sbjct: 483 ARDVKGIKKILIASGVRYDLAVQDPRYVKELVTHHVGGYLKIAPEHTEDGPLSKMMKPGM 542

Query: 312 AYE--YRQIIDRI-RSVRPDIAISSDFIVGFPGETDDDFRATMDLVD--KIGYAQAFSFK 366
                ++ + D+  +       +   FI   PG TD D       +        Q  +F 
Sbjct: 543 GAYDEFKALFDKYSKEAGKKQYLIPYFISAHPGTTDLDMVNMALWLKSNDFKLDQVQNFY 602

Query: 367 YSPRLG------TPGSNMLE--------QVDENVKAERLLCLQKKL----------REQQ 402
            SP         T  +++           V +  +  RL     +              +
Sbjct: 603 PSPMANATTIYHTEMNSLRNIKNNTDIVAVPKGARQRRLHKAILRYHDPAGWPMIRDALR 662

Query: 403 VSFNDACVGQIIEVLIEKHGKEK 425
                  +G+    L+ + G+++
Sbjct: 663 AMGMAKLIGKGPNCLVPEEGRDE 685


>gi|116625674|ref|YP_827830.1| radical SAM domain-containing protein [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116228836|gb|ABJ87545.1| Radical SAM domain protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 504

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 60/384 (15%), Positives = 122/384 (31%), Gaps = 71/384 (18%)

Query: 83  FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142
            +     +     +    + +V+ G       ++ L  +  ++ VV  Q    L  +++R
Sbjct: 76  MIRETVQIAREVKRLYPKMPIVLGGWHPSLLPDQTLA-AEYIDAVVVGQGEEALLAVVQR 134

Query: 143 ARFGK---------------------RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLT 181
              G+                     R +     +  K   L+  D          A  T
Sbjct: 135 LEAGESLEGIPGVGYKEDGRIRFNVTRALRPLKEMPPKAYHLADFDAYQRVCGRRWAMYT 194

Query: 182 IQEGCDKFCTFCVVPYTRGIEISR-SLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKG 239
               C   C +C      G + +    +QVV+E   L+    +  + ++  N        
Sbjct: 195 SSLACPYNCGYCTNDGVYGRKWNALDPAQVVEETTDLVSRYNLELLWIVDDNF------- 247

Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCL-IKAHGDLDVLMPYLHLP--VQ 296
                    D   ++   +GLVR           S  L I+   +   L+    L    Q
Sbjct: 248 -------LVDRERAVGIAEGLVRRGVKFDWSIQASTNLVIRLTVEELKLLRRAGLTQMSQ 300

Query: 297 SGSDRILKSMNRRHTAYEYRQII----DRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352
                  K M+     ++    I    D++      I  S + I G+PGE + + R ++ 
Sbjct: 301 GADTGSAKMMHLMGKDFQDLDAIYGAADKLTQA--GIRPSFNLIFGYPGEGEKERRESVA 358

Query: 353 LV----DKIGYAQAFSFKYSPRLGTP----GSNMLEQVDE----------------NVKA 388
           L+     +   A+ ++  ++P  G+P       +  +V +                 +K 
Sbjct: 359 LMMNICRRYPGAEFWTNIFTPYPGSPIMKRAFELGIEVPKTLEGWADFFPRYTVLPWLKG 418

Query: 389 ERLLCLQKKLREQQVSFNDACVGQ 412
                LQ      +V+F+   +G+
Sbjct: 419 REHERLQNMREYMRVAFHRVPIGK 442


>gi|312170593|emb|CBX78856.1| O2-independent coproporphyrinogen III oxidase [Erwinia amylovora
           ATCC BAA-2158]
          Length = 457

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 41/236 (17%), Positives = 83/236 (35%), Gaps = 21/236 (8%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC        +++R   +  D    L+        L  Q   +    G  G   
Sbjct: 62  CHRLCYFC----GCNKQVTRQQHKADDYLAALMLEIAARARLFQQRTVSQMHWG--GGTP 115

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL-------MPYLHLPVQSG 298
           TF      +  +   +R  +  S   ++S  +     +LDVL          L + VQ  
Sbjct: 116 TF-LNKQQIRRLMACLRQHFHISDTAEISIEVDPRETELDVLDHLRAEGFNRLSMGVQDF 174

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           + ++ + +NR         ++ R R +   ++ + D I G P +T   F  T+  V ++ 
Sbjct: 175 NKQVQEKVNRVQDEKTIFALVARARQL-GFVSTNIDLIYGLPAQTPASFAFTLQKVVELD 233

Query: 359 YAQAFSFKYSPRLGTPGSN---MLEQVDENVKAERLLCLQKKLREQQVSFNDACVG 411
             +   F Y+       +       ++ +    ++L  LQ+ +           +G
Sbjct: 234 PDRLSIFNYAHMPALFAAQRKIREAELPDA--QQKLAILQQTIATLTAQDYQ-FIG 286


>gi|149183016|ref|ZP_01861471.1| coproporphyrinogen III oxidase [Bacillus sp. SG-1]
 gi|148849300|gb|EDL63495.1| coproporphyrinogen III oxidase [Bacillus sp. SG-1]
          Length = 450

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 46/270 (17%), Positives = 99/270 (36%), Gaps = 35/270 (12%)

Query: 152 TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT-----RGIEISRS 206
            D        +LS+V   Y+ ++ ++ ++ I   C   C +C  P       +G   S  
Sbjct: 102 IDLMERIVDRQLSVVPDLYSLQKEISIYIGIPF-CPTKCAYCTFPAYAILGKQGRVDSFL 160

Query: 207 LS---QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC------TFSDLLYSLSEI 257
                ++ +  R L +NGV            + G G             + ++  S  ++
Sbjct: 161 TGLHYEIQETGRWLKENGVKI-------TTIYYGGGTPTSITAEQMDLLYEEMYRSFPDV 213

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
             +  +      P  ++   ++        +  + +  QS ++  LK++ R H+  E  +
Sbjct: 214 DQVREVTVEAGRPDTITPDKLEVL--NKWNIDRISINPQSYTNETLKAIGRHHSVEETIE 271

Query: 318 IIDRIRSV-RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
                R +   +I +  D I+G PGE  D+F  +++  +K+          S       S
Sbjct: 272 KFHLAREMGMKNINM--DLIIGLPGEGVDEFSHSLNETEKLMPESLTVHTLS---FKRAS 326

Query: 377 NMLE-----QVDENVKAERLLCLQKKLREQ 401
            M       +V    + ER++ L  +  ++
Sbjct: 327 EMTRNKEKYKVAGREEIERMMALGDQWTKE 356


>gi|328950526|ref|YP_004367861.1| Radical SAM domain protein [Marinithermus hydrothermalis DSM 14884]
 gi|328450850|gb|AEB11751.1| Radical SAM domain protein [Marinithermus hydrothermalis DSM 14884]
          Length = 500

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 53/266 (19%), Positives = 94/266 (35%), Gaps = 39/266 (14%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
           + ++ GC + CTFC+     G   +    +V+        +GV ++ L+G  ++ +    
Sbjct: 222 IEVERGCPRPCTFCLARVMYGPTRNADPERVLAVV----PDGVEKVGLIGAALSDYPHVK 277

Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
             G K     +  ++S I+         +   D     I   G L         P Q   
Sbjct: 278 YVGHKLLERGVKLAVSSIR---------ADRVDHELAWILKEGGLRTFTIAADGPSQ--- 325

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL---VDK 356
              L+ + ++    E+     RI        +    ++G P ETDDD    ++    + +
Sbjct: 326 --RLRELLKKQIKLEHLYKAARIARDLKFKGLKLYQMIGLPTETDDDITEMIEFTKELAE 383

Query: 357 IGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEV 416
           I         + P+  TP  N        V   RL  +QK+LR+ +           +EV
Sbjct: 384 ITPVALGISPFVPKRHTPHFN-DRFAGIRVIEARLKRIQKELRKLRP---------RVEV 433

Query: 417 --------LIEKHGKEKGKLVGRSPW 434
                    IE      G  VGR+ +
Sbjct: 434 RNTSAKWAWIEAVIARGGPEVGRAAY 459


>gi|310821918|ref|YP_003954276.1| lipoyl synthase [Stigmatella aurantiaca DW4/3-1]
 gi|309394990|gb|ADO72449.1| Lipoyl synthase [Stigmatella aurantiaca DW4/3-1]
          Length = 309

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 28/193 (14%), Positives = 64/193 (33%), Gaps = 10/193 (5%)

Query: 175 GVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA 234
           G    + + E C + C FC V       +     + V  A+ + +  +  I +   N   
Sbjct: 63  GTATVMLMGEVCTRACRFCHVKVGAPPPL--DPMEPVHLAQAVREMDLEYIVVTSVN--- 117

Query: 235 WRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP 294
            R    DG    F+  +  L +      +       + +   L         ++ +    
Sbjct: 118 -RDDRPDGGASHFALAIRELRKESPKTIVEVLIPDFKGVEKDLTTVAEARPHVVAHNVET 176

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           V+  +   ++     +      ++++ ++     +   S  +VG  GETD +   T   +
Sbjct: 177 VERLTP-TVRDRRAGYRQS--LRVLEYLKRRPEGLYTKSSVMVGL-GETDAELEQTFKDL 232

Query: 355 DKIGYAQAFSFKY 367
            + G       +Y
Sbjct: 233 REAGVDVLTLGQY 245


>gi|255521500|ref|ZP_05388737.1| hypothetical protein LmonocFSL_09810 [Listeria monocytogenes FSL
           J1-175]
          Length = 291

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 38/195 (19%), Positives = 70/195 (35%), Gaps = 19/195 (9%)

Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDE--ARKLIDNGVCEITLLG-----QNVNAWRGKGL 240
             CTFC    +     +R+L   V     R  +     +   +       N +A   +  
Sbjct: 22  GGCTFCSAAGSGDFAGNRALDLKVQFQQVRDKMQTKWKDGKCIAYFQAFTNTHAPVAE-- 79

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL-DVLMPYLHLPVQSGS 299
                   +   ++    G+V L    + P  + D +++   +L +    +L L +QS  
Sbjct: 80  ------LREKFETVLNEPGVVGLSI-ATRPDCLPDDVVEYLAELNERTYLWLELGLQSAH 132

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
           D   + +NR H    Y + + +++    +I I +  I G P ET +    T   V + G 
Sbjct: 133 DETGRLINRAHDYDCYLEGVHKLQK--HNIRICTHIINGLPKETPEMMMETTRKVVESGV 190

Query: 360 AQAFSFKYSPRLGTP 374
                       GTP
Sbjct: 191 DGIKIHLLHLLKGTP 205


>gi|312898010|ref|ZP_07757419.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Megasphaera micronuciformis F0359]
 gi|310620935|gb|EFQ04486.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Megasphaera micronuciformis F0359]
          Length = 373

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 39/192 (20%), Positives = 78/192 (40%), Gaps = 12/192 (6%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C +C  P   G  IS  L   V+   + I       + +G+  +     G      
Sbjct: 11  CVRKCLYCDFPSYGG--ISSYLDDYVEALCREI----RATSYIGEAADTVYFGGGTPSLL 64

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLI--KAHGDLDVL-MPYLHLPVQSGSDRI 302
           T       +S +    R+   +    +++   I      DL  + +  + + +QS  DR+
Sbjct: 65  TARQGEKIMSALTDTFRIDADSEITFEVNPDGIKSDYIRDLIKIGVNRISMGIQSFDDRL 124

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIA-ISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
           L+ + R HT+ E    ++ +R+    +  +S+D I G PG++ +D       + ++G   
Sbjct: 125 LQLLRRVHTSAEAFAALEAVRT--GGVTNVSADLIYGLPGQSPEDAETDARSLIELGVTH 182

Query: 362 AFSFKYSPRLGT 373
           A ++      GT
Sbjct: 183 ASAYSLIVEEGT 194


>gi|307565294|ref|ZP_07627787.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Prevotella amnii CRIS 21A-A]
 gi|307345963|gb|EFN91307.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Prevotella amnii CRIS 21A-A]
          Length = 381

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 66/155 (42%), Gaps = 13/155 (8%)

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
             L +      +P D++   ++A   L   +  + + VQ+ +D  LK ++RRH++ +  +
Sbjct: 93  PSLPKEITIECNPEDVTPNFVQALSTLP--VNRISMGVQTFNDERLKFIHRRHSSNKILE 150

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
            +  +R++  +  IS D + GFP +T +++   +     +      ++      GTP   
Sbjct: 151 AVRLLRNIGIN-NISIDLMFGFPKQTQEEWIDDIKKAISLNVEHISAYSLMYEEGTPLYA 209

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQ 412
           ML+             + +   EQ  +  +  + +
Sbjct: 210 MLKH----------HKITQIGEEQYRNMYEELIDR 234


>gi|229815328|ref|ZP_04445663.1| hypothetical protein COLINT_02374 [Collinsella intestinalis DSM
           13280]
 gi|229809108|gb|EEP44875.1| hypothetical protein COLINT_02374 [Collinsella intestinalis DSM
           13280]
          Length = 625

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 79/232 (34%), Gaps = 27/232 (11%)

Query: 179 FLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRG 237
            + +  GC + C FC    T      RS  QVV      + + G  E++L   +      
Sbjct: 267 CVEVLRGCARGCRFCQAGMTYRPVRERSADQVVSAVTGGLAHMGYDEVSLNSLSTT---- 322

Query: 238 KGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQS 297
                +    +++L  L++  G   +  +    R  S  +  A          L    ++
Sbjct: 323 -----DHSKCAEMLNRLNKRLGDTGISISVPSQRLDSFGVDMAAAVAGEKKGGLTFAPEA 377

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDF-------RAT 350
           GS R+   +N+  T  +  +             +   F++G PGETD+D          T
Sbjct: 378 GSQRMRDIINKNVTEEDLERATRAAFEAGWR-RVKLYFMMGLPGETDEDIVAIAQLADHT 436

Query: 351 MDLVDKIGY--------AQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCL 394
           +++  ++                 + P+  TP      Q+D+     R   L
Sbjct: 437 LEIAREVVPKEQRGGISVSISVSVFIPKAHTP-FQWCPQLDDAEVKRRQQLL 487


>gi|158522151|ref|YP_001530021.1| radical SAM domain-containing protein [Desulfococcus oleovorans
           Hxd3]
 gi|158510977|gb|ABW67944.1| Radical SAM domain protein [Desulfococcus oleovorans Hxd3]
          Length = 604

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 45/222 (20%), Positives = 80/222 (36%), Gaps = 33/222 (14%)

Query: 140 LERARFGKRVVDTDYSVEDKF-ERLSIVDGGYNR-KRGVTAFLTIQEGCDKFCTFCVV-- 195
           LE   +G+  + T   +E  + ++L ++    +R  RG  A   +  GC   C+FC +  
Sbjct: 209 LEDGVWGRENIATLPGIEPPYLKKLPVIGNYLSRITRGNVAAPYL--GCPYSCSFCSISA 266

Query: 196 -PYTRGIEISRSLSQVVDEARKLIDNGV----CEITLLGQNVNAWRGKGLDGEKCTFSDL 250
            P  +   +SR+    VDE  +   NG          L  N+       + G+K      
Sbjct: 267 LPKNQRRFMSRTPKDFVDEIAETQKNGATFKNRFYVFLPDNLL------ISGKK--LEAF 318

Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
           L  +   K  +      S     S  L++          +  +  +S +   LKS+ +  
Sbjct: 319 LDEIIARKVKINYISQISIEIADSPHLLEKLRRSG--ASHFFIGFESLNLDNLKSIGKAA 376

Query: 311 TAY----------EYRQIIDRIRSVRPDIAISSDFIVGFPGE 342
                         Y + I +I+     I+I   FI G P +
Sbjct: 377 VREIEKSGLSVADYYARQIRKIQD--HGISIHGAFITGMPHD 416


>gi|47097506|ref|ZP_00235047.1| conserved hypothetical protein TIGR01212 [Listeria monocytogenes
           str. 1/2a F6854]
 gi|254829465|ref|ZP_05234152.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165]
 gi|254898172|ref|ZP_05258096.1| hypothetical protein LmonJ_00115 [Listeria monocytogenes J0161]
 gi|254912335|ref|ZP_05262347.1| conserved hypothetical protein [Listeria monocytogenes J2818]
 gi|254936662|ref|ZP_05268359.1| conserved hypothetical protein [Listeria monocytogenes F6900]
 gi|47014121|gb|EAL05113.1| conserved hypothetical protein TIGR01212 [Listeria monocytogenes
           str. 1/2a F6854]
 gi|258601880|gb|EEW15205.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165]
 gi|258609258|gb|EEW21866.1| conserved hypothetical protein [Listeria monocytogenes F6900]
 gi|293590316|gb|EFF98650.1| conserved hypothetical protein [Listeria monocytogenes J2818]
          Length = 321

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 38/195 (19%), Positives = 70/195 (35%), Gaps = 19/195 (9%)

Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDE--ARKLIDNGVCEITLLG-----QNVNAWRGKGL 240
             CTFC    +     +R+L   V     R  +     +   +       N +A   +  
Sbjct: 52  GGCTFCSAAGSGDFAGNRALDLKVQFQQVRDKMQTKWKDGKCIAYFQAFTNTHAPVAE-- 109

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL-DVLMPYLHLPVQSGS 299
                   +   ++    G+V L    + P  + D +++   +L +    +L L +QS  
Sbjct: 110 ------LREKFETVLNEPGVVGLSI-ATRPDCLPDDVVEYLAELNERTYLWLELGLQSAH 162

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
           D   + +NR H    Y + + +++    +I I +  I G P ET +    T   V + G 
Sbjct: 163 DETGRLINRAHDYDCYLEGVRKLQK--HNIRICTHIINGLPKETPEMMMETTRKVVESGV 220

Query: 360 AQAFSFKYSPRLGTP 374
                       GTP
Sbjct: 221 DGIKIHLLHLLKGTP 235


>gi|15640959|ref|NP_230590.1| lipoyl synthase [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|153822114|ref|ZP_01974781.1| lipoic acid synthetase [Vibrio cholerae B33]
 gi|229510875|ref|ZP_04400354.1| lipoate synthase [Vibrio cholerae B33]
 gi|229517996|ref|ZP_04407440.1| lipoate synthase [Vibrio cholerae RC9]
 gi|229608474|ref|YP_002879122.1| lipoyl synthase [Vibrio cholerae MJ-1236]
 gi|254848076|ref|ZP_05237426.1| lipoyl synthase [Vibrio cholerae MO10]
 gi|22001801|sp|Q9KTF9|LIPA_VIBCH RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|9655402|gb|AAF94105.1| lipoic acid synthetase [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|126520386|gb|EAZ77609.1| lipoic acid synthetase [Vibrio cholerae B33]
 gi|229344711|gb|EEO09685.1| lipoate synthase [Vibrio cholerae RC9]
 gi|229350840|gb|EEO15781.1| lipoate synthase [Vibrio cholerae B33]
 gi|229371129|gb|ACQ61552.1| lipoate synthase [Vibrio cholerae MJ-1236]
 gi|254843781|gb|EET22195.1| lipoyl synthase [Vibrio cholerae MO10]
          Length = 321

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 31/211 (14%), Positives = 70/211 (33%), Gaps = 12/211 (5%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V    G   +    +    A+ + D  +  + +   +    R    DG   
Sbjct: 94  CTRRCPFCDV--AHGRPNAPEAEEPKKLAQTIHDMKLKYVVITSVD----RDDLRDGGAQ 147

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
            F+D    +  +   +++       R   +  ++A  D     P +       + R+ + 
Sbjct: 148 HFADCNREIRALNPHIKIETLVPDFRGRMEVALEALKDNP---PDVFNHNLETAPRLYRK 204

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           +          +++ + +   P +   S  ++G  GET ++    +  +   G       
Sbjct: 205 VRPGANYKWSLELLRQFKEQHPHVPTKSGLMMGL-GETKEEIVEVLKDLRAHGVTMLTLG 263

Query: 366 KYSP--RLGTPGSNMLEQVDENVKAERLLCL 394
           +Y    R   P    +   + +   E  L L
Sbjct: 264 QYLAPSRHHLPVERYVPPAEFDELKEVALEL 294


>gi|294673525|ref|YP_003574141.1| hypothetical protein PRU_0787 [Prevotella ruminicola 23]
 gi|294473770|gb|ADE83159.1| conserved hypothetical protein [Prevotella ruminicola 23]
          Length = 670

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 47/307 (15%), Positives = 88/307 (28%), Gaps = 58/307 (18%)

Query: 127 VVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTA-------- 178
           V           LL+       V++  Y      E  +  D  Y R+             
Sbjct: 244 VEEQSNMMHAQRLLQGVDGRYVVINPPYPPMTTEELDASFDLPYTRQPHPKYKGKRIPAY 303

Query: 179 -----FLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDN----------GV 222
                 + I  GC   C FC +   +G  I  RS   ++ E +++I+           G 
Sbjct: 304 EMIKFSVNIHRGCFGGCAFCTISAHQGKFITCRSKESILREVKQVIEMPDFKGNLSDLGG 363

Query: 223 CEITLLGQN---------------VNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
               + G +               ++      L+ +     D+  S+  + G+      +
Sbjct: 364 PSANMYGMSGRNKNACEKCRRPSCIHPQICPNLNTDHSKLLDIYRSVDALPGIKHSYIGS 423

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYL------------HLPVQSGSDRILKSMNRR-----H 310
               D+     K        M Y              +  +  SDR+L  M +      +
Sbjct: 424 GVRYDLLLHRSKDEASNKAAMEYTRELITRHVSGRLKVAPEHTSDRVLYLMRKPSFQQFY 483

Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370
                   I+R   +R  I     FI   PG  ++D      +   + +       ++P 
Sbjct: 484 EFKRIFDRINREEGLRQQIIPY--FISSHPGCQEEDMAELAVITKNLDFHLEQVQDFTPT 541

Query: 371 LGTPGSN 377
             T  + 
Sbjct: 542 PLTNATE 548


>gi|326201004|ref|ZP_08190876.1| Radical SAM domain protein [Clostridium papyrosolvens DSM 2782]
 gi|325988572|gb|EGD49396.1| Radical SAM domain protein [Clostridium papyrosolvens DSM 2782]
          Length = 542

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 30/163 (18%), Positives = 60/163 (36%), Gaps = 13/163 (7%)

Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
           P   G  +   +  +      +   GV  I  +  ++N    +  D  +    +      
Sbjct: 262 PILGGEPMFMKVESIEKNMNYIHSLGVKSIVFVDDSLNVPLDRFKDMLRMMIRNKYNF-- 319

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
                    +  SH  + +  L             + L V+SG+D I K+M++R +  + 
Sbjct: 320 ----KWYSFFRISHSDEETYEL---MAKSG--CGGVILGVESGNDTIRKNMDKRVSTEQL 370

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
              I ++      I   +  +VGFPGET+   R T+  +++  
Sbjct: 371 VWGIGQLNKY--GIVSHASCMVGFPGETEKTARDTIKFIEEAK 411


>gi|153955742|ref|YP_001396507.1| coproporphyrinogen III oxidase [Clostridium kluyveri DSM 555]
 gi|219856111|ref|YP_002473233.1| hypothetical protein CKR_2768 [Clostridium kluyveri NBRC 12016]
 gi|146348600|gb|EDK35136.1| Conserved hypothetical protein [Clostridium kluyveri DSM 555]
 gi|219569835|dbj|BAH07819.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 482

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 39/249 (15%), Positives = 74/249 (29%), Gaps = 31/249 (12%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQ-------NVNAWRGK 238
           C   C +C          S  +    D     I++ + EI  +         N+      
Sbjct: 159 CPTRCLYCSFT-------SNPIENFKDLVEPYIESLIYEIRQISSYIKKNKLNIECIYFG 211

Query: 239 GLDGEKCTFSDLLYSLSEIKGLV----RLRYTTSHPRDMSDCLIKAHGDLDVL-MPYLHL 293
           G              + EI        R++             +     +    +  + +
Sbjct: 212 GGTPTSVDDEKFKKIICEIYDNFVYGHRIKEFNVECGRPDSMTLNKLKTMKKYGVNRISI 271

Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
             Q+ +D  L+ + R H   + ++     R    D  I+ D IVG PGE  +    T   
Sbjct: 272 NPQTMNDSTLEFIGRNHRVEDIKEKFHMARECGFD-NINMDIIVGLPGEGIEHIDKTCTE 330

Query: 354 VDKIGYAQAFSFKYSPRLGTPGSN---------MLEQVDENVKAERLLCLQKKLREQ--Q 402
           ++K+          S + G+               + V+ N+  ER     + L  +   
Sbjct: 331 IEKLSPDSLTVHGMSVKRGSKLYENMINNTKYLTPDAVELNLMYERTARAAEALNMEPYY 390

Query: 403 VSFNDACVG 411
           +      VG
Sbjct: 391 LYRQKNMVG 399


>gi|90407629|ref|ZP_01215809.1| hypothetical protein PCNPT3_08764 [Psychromonas sp. CNPT3]
 gi|90311220|gb|EAS39325.1| hypothetical protein PCNPT3_08764 [Psychromonas sp. CNPT3]
          Length = 742

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 46/330 (13%), Positives = 93/330 (28%), Gaps = 84/330 (25%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEAR----------------------- 215
           + I  GC   CTFC +    G  I SRS   ++ E                         
Sbjct: 388 VNIMRGCFGGCTFCSITEHEGRVIQSRSEDSIIKEIETIRDSVPGFTGVISDLGGPTANM 447

Query: 216 -------KLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
                     +     ++ +  ++                DL     ++ G+ ++   + 
Sbjct: 448 YRLKCKSAKAEQTCRRLSCVFPDICHHMSTDHGHTI----DLYRRARKLSGIKKILIASG 503

Query: 269 HPRDMSDCLIKAHGDL--DVLMPYLHLPVQSGS----DRILKSMNRRHTA-----YEYRQ 317
              D++    +   +L    +  YL +  +       D+++K     + A      +Y +
Sbjct: 504 VRYDIAVEDPRYVKELVEHHVGGYLKIAPEHTEKGPLDKMMKPTMSSYDAFKKMFEKYSK 563

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK--IGYAQAFSFKYSPRLGTPG 375
              + + + P       FI   PG TD D       +        Q  +F  SP      
Sbjct: 564 AAGKKQYLIPY------FISAHPGTTDRDMINLALWLKSNNFKLDQVQNFYPSPMAN--A 615

Query: 376 SNML-------EQVDEN------VKAERLLCLQKKLRE--------------QQVSFNDA 408
           + M         +V+        +K  R   L K +                + +     
Sbjct: 616 TTMYHTEKNPLHKVNNESESVITIKGARQRRLHKAILRYHIPENWPQIREVLKSLGLARK 675

Query: 409 CVGQIIEVLIEKHGKEKGKLVGRSPWLQSV 438
            +G+    L+    + +  L   +     V
Sbjct: 676 LIGRGANCLVPAPSRNESSLPA-TKGNAQV 704


>gi|326791624|ref|YP_004309445.1| coproporphyrinogen dehydrogenase [Clostridium lentocellum DSM 5427]
 gi|326542388|gb|ADZ84247.1| Coproporphyrinogen dehydrogenase [Clostridium lentocellum DSM 5427]
          Length = 480

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 42/243 (17%), Positives = 88/243 (36%), Gaps = 27/243 (11%)

Query: 138 ELLERARFGKRVVDTD---YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCV 194
           E+++     + +V  +      E   E L+I+      +  +   +     C   C +C 
Sbjct: 117 EVIDAHLKAEYLVSANKRILMREVAKEELAILRQNKPEEISLYIGIPF---CPTRCVYCS 173

Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLL-----GQNVNAWRGKGLDGEKCTFSD 249
                      SL +   +    ++    EIT +     G  + +    G          
Sbjct: 174 FTA-------YSLEKCEAQVEPYLEALFKEITFVAEAKKGVPIRSLYIGGGTPTSLNEDQ 226

Query: 250 LLYSLSEIKGLVRLRYTTSHPRD------MSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
           LL  L  +K    L     +  +      ++   ++   +    +  + +  QS + + L
Sbjct: 227 LLCLLEHVKSSFDLSEVEEYTIEAGRPDTITKDKLRIMKEQG--VGRISINPQSMNQKTL 284

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
            ++ RRH   + +++    R++  D  I+ D I+G PGET  D   T+D ++K+G     
Sbjct: 285 DTIGRRHGVEDIKRVFAEARALGHD-CINMDMILGLPGETVADVAYTLDELEKLGPENIT 343

Query: 364 SFK 366
              
Sbjct: 344 VHT 346


>gi|260891520|ref|ZP_05902783.1| oxygen-independent coproporphyrinogen III oxidase 2 [Leptotrichia
           hofstadii F0254]
 gi|260858903|gb|EEX73403.1| oxygen-independent coproporphyrinogen III oxidase 2 [Leptotrichia
           hofstadii F0254]
          Length = 507

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 56/320 (17%), Positives = 112/320 (35%), Gaps = 19/320 (5%)

Query: 57  NSMDDADLIVLNTCHIREKAAEKVYSFLGRIR-NLKNSRIKEGGDLLVVVAGCVAQAEGE 115
           +  D+ ++I +NT  I      K    L  +  + K    +      V+    + +   +
Sbjct: 61  SESDNTEIITVNTVLI----DNKNRKILKEVTFSHKKVNEEYFDQAEVMAKSSLMKLFDK 116

Query: 116 EILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSI----VDGGYN 171
           +   +  I+  V   +   R  ++         +++  Y V ++  +L +        Y 
Sbjct: 117 KNEYKWGILIGVRPTKIVGRFLKMGLSYNEINEILEKIYFVSNEKRKLLLDIVKRQEPYL 176

Query: 172 RKRGVTAFLTIQEGCDKFCTFCVVP--YTRGIEISRSLSQVVDEARKLIDNGVCEITLLG 229
            K  +  ++ I   C   C++C  P    RG    R   + +      I         LG
Sbjct: 177 DKETIGIYIGIAF-CPTKCSYCSFPAYLLRGKYAER-YDEYIGSIYHEISEIGQLTQELG 234

Query: 230 QNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMP 289
             +N     G      T  ++   L  +K    L Y      +           L ++  
Sbjct: 235 LKINTIYIGGGTPSILTAKEIDKLLKTVKENYNLDYLKEFTFEAGRIDTLDEEKLAIIKS 294

Query: 290 Y----LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDD 345
           Y    + +  QS +++ LK +NR H   ++  +    +++   + I+ D I+G P ET +
Sbjct: 295 YGINKISINPQSFNEKTLKLVNRYHDREQFDNVYKLAKNL--GLEINMDLILGLPRETTE 352

Query: 346 DFRATMDLVDKIGYAQAFSF 365
           D   TMD + K         
Sbjct: 353 DILYTMDEISKYDMENLTIH 372


>gi|192359956|ref|YP_001981814.1| radical SAM domain-containing protein [Cellvibrio japonicus
           Ueda107]
 gi|190686121|gb|ACE83799.1| radical SAM domain protein [Cellvibrio japonicus Ueda107]
          Length = 814

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 49/293 (16%), Positives = 90/293 (30%), Gaps = 45/293 (15%)

Query: 132 TYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT-------------A 178
             Y    L++R    +  ++      +  E  S+ D  Y R    +              
Sbjct: 374 NPYNARPLVQRHGNREVWINPPPIPLETDELDSVFDLPYQRVPHPSYGDAKIPAYDMIKT 433

Query: 179 FLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDN----GVCEITLLGQNVN 233
            + I  GC   CTFC +    G  I SRS   ++ E   + D           L G   N
Sbjct: 434 SVNIMRGCFGGCTFCSITEHEGRIIQSRSQDSILREIEHIRDKVPGFTGHISDLGGPTAN 493

Query: 234 AWR----------------------GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPR 271
            +R                       K L       ++L      +KG+  +   +    
Sbjct: 494 MYRLTCKDMPTLSKCRRLSCVHPTICKNLTTSHKHTTELYRKARALKGVHTISIASGLRY 553

Query: 272 DMSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRRHTAYEY--RQIIDRI-RSVR 326
           D++    +   +L    +  YL +  +   D +L  M +      Y  +++ D+  +   
Sbjct: 554 DLAVQDPEYVKELVTHHVGGYLKIAPEHTEDNVLAQMMKPKMTSYYDFKKMFDKFSKEAG 613

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
               +   FI   PG  D+D       + K  +       + P   +  + M 
Sbjct: 614 KKQYLIPYFIAAHPGTRDEDMVNMALWLKKNNFQVDQVQTFYPSPMSLATAMY 666


>gi|153933832|ref|YP_001384629.1| radical SAM domain-containing protein [Clostridium botulinum A str.
           ATCC 19397]
 gi|153934827|ref|YP_001388146.1| radical SAM domain-containing protein [Clostridium botulinum A str.
           Hall]
 gi|152929876|gb|ABS35376.1| radical SAM domain protein [Clostridium botulinum A str. ATCC
           19397]
 gi|152930741|gb|ABS36240.1| radical SAM domain protein [Clostridium botulinum A str. Hall]
          Length = 363

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 39/210 (18%), Positives = 74/210 (35%), Gaps = 11/210 (5%)

Query: 176 VTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEI-TLLGQNVNA 234
           +      QEGC   C FC      G E    + +  +  R+ I+  +  I         +
Sbjct: 7   IIPIFVAQEGCPHNCVFCNQYKITG-EKDEMIDE--NYVRETIEAYIKTIDRENSTLEVS 63

Query: 235 WRGKGLDGEKCTFSDLLYSLSEI---KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL 291
           + G    G        L  +++    KG +   + ++ P  +   ++    +       +
Sbjct: 64  FFGGTFTGIPIERQKSLLKVAKEYKDKGQIDYIHMSTRPDYIDREILDNLKEYS--ADII 121

Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351
            L VQS  D +L    R H+  E  +    IR       +    ++G PG+T      T+
Sbjct: 122 ELGVQSLDDEVLLKSGRGHSVEEVHRASKLIREY--GFTLGHQIMLGLPGDTFKKDIETV 179

Query: 352 DLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
               ++    A  +       TP  +ML++
Sbjct: 180 AKSLEMEPDIARIYPALVIKDTPMEDMLKK 209


>gi|146617|gb|AAA24072.1| lipoic acid synthetase [Escherichia coli]
          Length = 281

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 32/183 (17%), Positives = 68/183 (37%), Gaps = 12/183 (6%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V    G  ++   ++ V  A+ + D  +  + +   +    R    DG   
Sbjct: 54  CTRRCPFCDV--AHGRPVAPDANEPVKLAQTIADMALRYVVITSVD----RDDLRDGGAQ 107

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAH-GDLDVLMPYLHLPVQSGSDRILK 304
            F+D + ++ E    +++       R   D  +         +  +    V     RI +
Sbjct: 108 HFADCITAIREKSPQIKIETLVPDFRGRMDRALDILTATPPDVFNHNLENV----PRIYR 163

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
            +          ++++R +   P+I   S  +VG  GET+++    M  + + G      
Sbjct: 164 QVRPGADYNWSLKLLERFKEAHPEIPTKSGLMVGL-GETNEEIIEVMRDLRRHGVTMLTL 222

Query: 365 FKY 367
            +Y
Sbjct: 223 GQY 225


>gi|301308407|ref|ZP_07214361.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Bacteroides sp. 20_3]
 gi|300833877|gb|EFK64493.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Bacteroides sp. 20_3]
          Length = 385

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 30/198 (15%), Positives = 64/198 (32%), Gaps = 9/198 (4%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C K C +C   +    E+      +    +++            + +    G     ++ 
Sbjct: 21  CAKRCLYCD--FFSNTEMKYKEPYINALIKEMELRKGYIGNEALETIYFGGGTPSQLDEK 78

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPR--DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
            F  +  ++     +      T      DM    +    +       + + VQS     L
Sbjct: 79  DFGKIFEAIYRHFDVAEQMEITLEANPDDMKREYVSLLRNYP--FNRVSMGVQSFHPEDL 136

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIA-ISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           + +NRRH   +  + ++  +     I  IS D I G P +T   +   +    ++     
Sbjct: 137 RFLNRRHDREQAIKAVELCKEY--GITNISIDLIYGLPNQTQQAWEENLRQAIRLDVPHL 194

Query: 363 FSFKYSPRLGTPGSNMLE 380
            ++      GT    +LE
Sbjct: 195 SAYHLIYEEGTALYKLLE 212


>gi|298491044|ref|YP_003721221.1| radical SAM domain-containing protein ['Nostoc azollae' 0708]
 gi|298232962|gb|ADI64098.1| Radical SAM domain protein ['Nostoc azollae' 0708]
          Length = 529

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 57/356 (16%), Positives = 119/356 (33%), Gaps = 50/356 (14%)

Query: 62  ADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRS 121
           ADL++L+   ++++        L +I+  K          LV V G    A   E+    
Sbjct: 66  ADLVILSAMIVQKE------DLLAQIQEAKRRGK------LVAVGGPYPTALPNEVTDV- 112

Query: 122 PIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTA--F 179
              + ++  +    LP  ++    G+         E      + +      +    A   
Sbjct: 113 -GADYLILDEGEITLPLFIDAIGRGESSGIFRSGGEKPDVTNTPIPRFDLLEFDAYAEMS 171

Query: 180 LTIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK 238
           +    GC   C FC +    G +  +++ +Q++ E   L + G      +  +       
Sbjct: 172 VQFSRGCPFQCEFCDIIVLYGRKPRTKTPAQLLAELDYLYELGWRRSIFMVDD------- 224

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM------SDCLIKAHGDLDVLMPYLH 292
              G K      L  L     +V   Y  S   +          L+ A   +      + 
Sbjct: 225 NFIGNKRNVKLFLKELQ--PWMVAHHYPFSFATEASVDLAQDQELMDAM--VRCNFGAVF 280

Query: 293 LPVQSGSDRILKSMNRR-HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351
           L +++  +  L    +  +T     + +++I   R  + + + FI+GF GE        +
Sbjct: 281 LGIETPDEESLTFTQKFQNTRDSLTEGVNKIT--RSGLRVMAGFIIGFDGEKSGAGARIV 338

Query: 352 DLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFND 407
             V++                T   +ML+ + +     RL   + +LR +  + N 
Sbjct: 339 KFVEQTAIP------------TALFSMLQALPDTALWHRLEK-ENRLRNKSANINQ 381


>gi|182417590|ref|ZP_02948912.1| radical SAM domain protein [Clostridium butyricum 5521]
 gi|237667727|ref|ZP_04527711.1| radical SAM domain protein [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|182378545|gb|EDT76074.1| radical SAM domain protein [Clostridium butyricum 5521]
 gi|237656075|gb|EEP53631.1| putative cobalamin-dependent enzyme [Clostridium butyricum E4 str.
           BoNT E BL5262]
          Length = 566

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 33/215 (15%), Positives = 75/215 (34%), Gaps = 12/215 (5%)

Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           L     G    +    + D  E +   +   +    +  +     GC   C +C+   + 
Sbjct: 147 LHYKNNGTVYSNEKRPLMDMDEIIFPYETDEDLSNKIVYYEA-SRGCPFNCKYCLSSTSH 205

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G     ++ +V  E +  ID  V  +  + +  N             F+  ++       
Sbjct: 206 G-VRFLNIDRVRKELKYFIDKRVRLVKFVDRTFNCNH---------KFAMAIWEFLINSD 255

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
                +       + D  I+             + VQ+ +D +L+++NR       ++ +
Sbjct: 256 TETQFHFEISADILKDEEIEILSKAPEGRFQFEVGVQTTNDEVLRNINRFVNFSHIKEKV 315

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           + + +++ +I    D I G PGE    F+ + + V
Sbjct: 316 EELMAIK-NIKQHLDLIAGLPGEDYISFKKSFNDV 349


>gi|160890876|ref|ZP_02071879.1| hypothetical protein BACUNI_03321 [Bacteroides uniformis ATCC 8492]
 gi|156859875|gb|EDO53306.1| hypothetical protein BACUNI_03321 [Bacteroides uniformis ATCC 8492]
          Length = 376

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 46/236 (19%), Positives = 72/236 (30%), Gaps = 26/236 (11%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWR---GKGLD 241
           C   C +C          S          R L       +  L  + +       G    
Sbjct: 11  CKTRCIYCD---FYSTTRS---ELKQQYIRALCTELKTRKGYLKEEPIETIYFGGGTPSQ 64

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPR--DMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
                F  +  ++ E+ G       T      D+++  +     L      + + +Q+  
Sbjct: 65  LAHEDFEQIFRTIKEVYGTEHAEEITLEANPDDLTEEYVSMLRTLP--FNRISMGIQTFD 122

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIA-ISSDFIVGFPGETDDDFRATMDLVDKIG 358
              LK +NRRH A +    + R+R        IS D I G P ETD  +    DL   +G
Sbjct: 123 APTLKLLNRRHNAAQAIVAVHRLRQA--GFRNISIDLIYGLPDETDQRWER--DLQQAVG 178

Query: 359 YAQAFSFKY--SPRLGTPGSNMLE-----QVDENVKAERLLCLQKKLREQQVSFND 407
                   Y  +   GT    ML+     +VDE         L   L        +
Sbjct: 179 LDVEHISAYHLTYEKGTRIYEMLQSHRISEVDEESSVRFFSALMDTLGAAGYEHYE 234


>gi|149370533|ref|ZP_01890222.1| Fe-S oxidoreductase [unidentified eubacterium SCB49]
 gi|149356084|gb|EDM44641.1| Fe-S oxidoreductase [unidentified eubacterium SCB49]
          Length = 627

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 32/181 (17%), Positives = 72/181 (39%), Gaps = 17/181 (9%)

Query: 180 LTIQEGCDKF-CTFCVVPYTR-GIEISRSLSQVVDEARKLI-DNGVCEITLLGQNVNAWR 236
           LTI  GC    C+FC V     G   + + + +VD+  K+I D G+     + +      
Sbjct: 349 LTISHGCYWKQCSFCDVTLDYIGNYQNTTANDLVDKIEKIINDTGITGFHFVDEAAPPKM 408

Query: 237 GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQ 296
                  +   + LL    +I     +R+     +  +  L +       +   +   ++
Sbjct: 409 ------LRALSNALLERDIKITWWTNIRF----EKTFTAELCEVMARSGCIA--VTGGLE 456

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
             SDR+L  M +     +  ++       +  I + +  + GFP +T+ +   ++++V +
Sbjct: 457 VASDRLLAKMKKGVDISQVTRVTHNFSEHK--IMVHAYLMFGFPTQTEQETIDSLEVVRQ 514

Query: 357 I 357
           +
Sbjct: 515 L 515


>gi|19703498|ref|NP_603060.1| oxygen-independent coproporphyrinogen III oxidase [Fusobacterium
           nucleatum subsp. nucleatum ATCC 25586]
 gi|19713586|gb|AAL94359.1| Oxygen-independent coproporphyrinogen III oxidase [Fusobacterium
           nucleatum subsp. nucleatum ATCC 25586]
          Length = 348

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 30/172 (17%), Positives = 58/172 (33%), Gaps = 14/172 (8%)

Query: 174 RGVTAFLTIQE-GCDKFCTFCVVPYTRGIEISRSLSQVVDEA----RKLIDNGVCEITLL 228
           +     + I   GC   C FC      G E   SL  + +      + L  N + ++   
Sbjct: 2   KHYNIPVFISHFGCPNACVFCNQKKINGRETDVSLDDLKNIIDSYLKTLPKNSIKQVAFF 61

Query: 229 GQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLM 288
           G       G  ++ +K     +   +           T     D    ++         +
Sbjct: 62  GGTFT---GISMNLQKEYLEVVKKYIDNNDVEGVRISTRPECIDD--EILTQLKKYG--V 114

Query: 289 PYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFP 340
             + L +QS  D++LK+  R +T    ++  D I+S      +    ++G P
Sbjct: 115 KTIELGIQSLDDKVLKATGRNYTYDIVKKSCDLIKSY--GFELGVQLMIGLP 164


>gi|153854185|ref|ZP_01995493.1| hypothetical protein DORLON_01484 [Dorea longicatena DSM 13814]
 gi|149753234|gb|EDM63165.1| hypothetical protein DORLON_01484 [Dorea longicatena DSM 13814]
          Length = 368

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 35/201 (17%), Positives = 63/201 (31%), Gaps = 20/201 (9%)

Query: 186 CDKFCTFCVVPYTRGIEISRS--LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
           C K C +C         +S         +    L         L G            G 
Sbjct: 13  CVKKCRYC-------DFLSAPATPEARQEYVMGLCQKIRSYYDLAG---MYHVSSIFIGG 62

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCL-------IKAHGDLDVLMPYLHLPVQ 296
                     +  I   +R  +      +++  +       +K     +V +  L + +Q
Sbjct: 63  GTPSILETQQMRSIFDAIRATFPIDSDAEITVEVNPGTVDKLKLMAYRNVGINRLSIGLQ 122

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
           S  D+ LK + R HT  ++       R V     I+ D + G P +T   +  T+  V +
Sbjct: 123 STDDQELKMLGRIHTYKDFLDTYTLAREVGFQ-NINVDLMSGIPFQTLGGWEDTLKKVAE 181

Query: 357 IGYAQAFSFKYSPRLGTPGSN 377
           +G     ++      GTP   
Sbjct: 182 LGPEHISAYSLIIEEGTPFYE 202


>gi|294816136|ref|ZP_06774779.1| Radical SAM domain protein [Streptomyces clavuligerus ATCC 27064]
 gi|326444469|ref|ZP_08219203.1| hypothetical protein SclaA2_25546 [Streptomyces clavuligerus ATCC
           27064]
 gi|294328735|gb|EFG10378.1| Radical SAM domain protein [Streptomyces clavuligerus ATCC 27064]
          Length = 688

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 49/273 (17%), Positives = 82/273 (30%), Gaps = 33/273 (12%)

Query: 114 GEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDY-SVEDKFERLSIV------ 166
            +EIL R   V      +   R+P L  R+  G  V    +    D  E    V      
Sbjct: 160 PDEILARLDDVLA---RRDLDRIPNLAHRSGTGYTVNPRVFLPPADHPEYTEAVLRDLLD 216

Query: 167 DGGYNRKRGVTA----FLTIQEGCDKFCTFCVVPYTRG-IEISRSLSQVVDEARKLIDNG 221
             G  R  G  A     + IQ GC   C FC  P  +G     R L  V+ +   L D G
Sbjct: 217 FYGPERVTGPGAEVHVAVEIQRGCPYRCYFCTEPMVKGRRHRVRDLDVVMADITFLADRG 276

Query: 222 VCEITLL--GQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIK 279
           V  I L+    N+ +         +    +   ++     +    Y   +P      +  
Sbjct: 277 VSRIWLVCSEINIGSNALLFEMAARMRRLNRGRAV----PVHWTCYLLPNPPLARAEIRM 332

Query: 280 AHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI------IDRIRSVRPDIAI-- 331
                    P  +    S  D  L+     +      +        D        + +  
Sbjct: 333 LL--ESRFEPSWN-QFTSYHDENLRRTRVPYRTRHAIEAQIGWLEEDEAHRRAHGLPVPP 389

Query: 332 -SSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
              D  +G    T +    T+  ++++   + F
Sbjct: 390 RRLDMFLGNTYATPETVATTLRTINELRLGERF 422


>gi|162404906|gb|ABX88882.1| putative Fe-S oxidoreductase [Edwardsiella ictaluri 93-146]
          Length = 658

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 48/285 (16%), Positives = 92/285 (32%), Gaps = 51/285 (17%)

Query: 159 KFERLSIVDGGYNRKRG---VTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEA 214
            F+R+     G  R      +   + I  GC   C FC +    G  I SRS   ++ E 
Sbjct: 351 PFQRVPHPTYGKARLPAYDMIRFSVNIMRGCYGGCAFCSITEHEGRIIQSRSEDSIIREI 410

Query: 215 RKLIDN--GVCEIT--LLGQNVNAWR----------------------GKGLDGEKCTFS 248
            ++ D   G   I   L G   N +                        + +D       
Sbjct: 411 EEIRDKVPGFTGIISDLGGPTANMYMLRCQSPRAEQTCRRSSCVYPDICRHMDTNHEPTI 470

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSM 306
            L     +++G+ ++   +    D++    +   +L    +  YL +  +   +  L  M
Sbjct: 471 KLYRRARDLQGVKKILIASGVRYDLAVQDPRYIKELATHHVGGYLKIAPEHTEEGPLSKM 530

Query: 307 NRRHTAYEYR--QIIDRI-RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY--AQ 361
            +      YR  ++ D   +    +  +   FI   PG  D+D       + +  +   Q
Sbjct: 531 MKPGMGSYYRFKELFDAYSKQAGKEQYLIPYFISAHPGTRDEDMVNLALWLKQHRFRLDQ 590

Query: 362 AFSFKYSPRLGT---------PGSNMLEQ-----VDENVKAERLL 392
             +F  SP   +         P + +  +     V +  +  RL 
Sbjct: 591 VQNFYPSPLANSTTMYYTGKNPLAKVDYKSEDVVVPKGERQRRLH 635


>gi|326794521|ref|YP_004312341.1| hypothetical protein Marme_1232 [Marinomonas mediterranea MMB-1]
 gi|326545285|gb|ADZ90505.1| UPF0313 protein ygiQ [Marinomonas mediterranea MMB-1]
          Length = 763

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 43/285 (15%), Positives = 88/285 (30%), Gaps = 47/285 (16%)

Query: 132 TYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT-------------A 178
             +    L+++    +  V+      +  E   + D  Y R                   
Sbjct: 322 NPHNARALIQKHGKKEIWVNPPPIPLETDEMDGVFDFPYARVPHPKYKKARIPAYDMIKT 381

Query: 179 FLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDN----GVCEITLLGQNVN 233
            + I  GC   CTFC +    G  I SRS   +++E  ++ +           L G   N
Sbjct: 382 SINIMRGCFGGCTFCSITEHEGRVIQSRSHESILNEIEQIKEKVPGFTGHISDLGGPTSN 441

Query: 234 AWR----------------------GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPR 271
            +                          L+ +    + L     +++G+  +   +    
Sbjct: 442 MYTLNCKDDEIQASCRKLSCVYPEICPNLNTDHSPTTQLYRKARKVEGIHTVSIASGLRY 501

Query: 272 DMSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRRH--TAYEYRQIIDRI-RSVR 326
           D++    +   +L    +   L +  +      L  M +    T   ++++ D+  +   
Sbjct: 502 DLAVEDPEYVKELVTYHVGGLLKIAPEHSEKGTLSKMMKPGMGTYDNFKRMFDKYSKEAG 561

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGY--AQAFSFKYSP 369
               +   FI   PG  D+D       + K  +   Q  +F  SP
Sbjct: 562 KKQHLIPYFIAAHPGCEDEDMMNLAVWLKKNDFKPDQVQTFYPSP 606


>gi|291527627|emb|CBK93213.1| Fe-S oxidoreductase [Eubacterium rectale M104/1]
          Length = 621

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 76/217 (35%), Gaps = 13/217 (5%)

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGV---TAFLTIQEGCDKFCTFCVVPYTRGI 201
            G +  +  ++     + +S +   Y+          +     GC   C++C+       
Sbjct: 159 AGCKADEIVFTSPRPIKNMSEIPFCYDTLDDFSNRIIYYESSRGCPFSCSYCL-SSVDKT 217

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
              R    V  E +  ID  V +I  + +  N               +L   +      V
Sbjct: 218 LRFRDTEIVKRELKFFIDQKVPQIKFVDRTFNCNH--------AHAMELWRFIKANDNGV 269

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
              +       ++   ++   D+   +  L + VQS ++  +K ++R       ++++  
Sbjct: 270 TNFHFEISADLLNQEELELISDMRPGLIQLEIGVQSTNEVTIKEIHRTMKLERLKEVVRL 329

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           I+S   +I    D I G P E  D F  + D + ++ 
Sbjct: 330 IQSGN-NIHEHLDLIAGLPYEDYDSFGRSFDEIYELK 365


>gi|289434758|ref|YP_003464630.1| oxygen-independent coproporphyrinogen III oxidase [Listeria
           seeligeri serovar 1/2b str. SLCC3954]
 gi|289171002|emb|CBH27544.1| oxygen-independent coproporphyrinogen III oxidase [Listeria
           seeligeri serovar 1/2b str. SLCC3954]
          Length = 384

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 77/198 (38%), Gaps = 6/198 (3%)

Query: 186 CDKFCTFCVV--PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
           C+  C +C     +  G  +   +  ++ E +    N   E       V    G      
Sbjct: 20  CEHICYYCDFNKVFLEGQPVDEYVDLLIKEMQITAANKQMEPI---DTVFVGGGTPTTLN 76

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
           +   + L  ++ EI  +      +         + K     D  +  + + VQS ++ +L
Sbjct: 77  EAQIAKLCTAIQEIFPMKEEVEFSFEANPGDLSVAKVQTMKDYGVNRISMGVQSFNNDLL 136

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           K + R HT  +  Q ++ +R+V  +  +S D I   PG+T+ DF+ T++    +      
Sbjct: 137 KKIGRIHTVKDVYQSVENMRTVGFE-NVSIDLIFSLPGQTEADFQDTLNQALALDLPHYS 195

Query: 364 SFKYSPRLGTPGSNMLEQ 381
           ++       T   N++++
Sbjct: 196 AYSLIIEPKTIFYNLMQK 213


>gi|160940360|ref|ZP_02087705.1| hypothetical protein CLOBOL_05250 [Clostridium bolteae ATCC
           BAA-613]
 gi|158436940|gb|EDP14707.1| hypothetical protein CLOBOL_05250 [Clostridium bolteae ATCC
           BAA-613]
          Length = 425

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 36/202 (17%), Positives = 70/202 (34%), Gaps = 4/202 (1%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C +C     R    S   +      R++   G C      + V    G     E C
Sbjct: 18  CARKCLYCDFLSFRA-LASVHEAYTEQLIREIEVQGACCREYQVKTVFIGGGTPSVMEPC 76

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
              D++ +L+    +      T      +    K H      +  L + +QS  ++ LK 
Sbjct: 77  LIRDIMQALNRNFDIAGDAEITIEVNPGTLLQNKLHIYRAAGINRLSIGLQSADNQELKD 136

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIA-ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
           + R HT  E+ +     R        ++ D +   PG+T + ++ T+  V  +      +
Sbjct: 137 LGRIHTFEEFLKSYQCAR--MAGFTNVNVDLMSSIPGQTLESWKNTLKKVTMLKPEHISA 194

Query: 365 FKYSPRLGTPGSNMLEQVDENV 386
           +      GTP  +   + +   
Sbjct: 195 YSLIVEEGTPFWDRYGKREGEE 216


>gi|157364568|ref|YP_001471335.1| radical SAM domain-containing protein [Thermotoga lettingae TMO]
 gi|157315172|gb|ABV34271.1| Radical SAM domain protein [Thermotoga lettingae TMO]
          Length = 439

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 38/187 (20%), Positives = 70/187 (37%), Gaps = 18/187 (9%)

Query: 177 TAFLTIQEGCDKFCTFC-VVPYTR---GIEISRSLSQVVDEARKLIDN-GVCEITLLGQN 231
            A +    GC   C FC VVP+ +        RS+  VV+E + L  N GV  I+    N
Sbjct: 181 YASMESSRGCYGRCIFCSVVPFFQLSGKKLRFRSVENVVEEIKILKKNHGVKYISFNDAN 240

Query: 232 VNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL 291
             A         K     L   + +    +R         D+++ L++   +    +  +
Sbjct: 241 FLAS--------KERAFLLAERIIKENLDIRYSIEC-RADDINEDLLRLLKESG--LRKV 289

Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351
            L ++SG   +L    +  T  +  +  + +     DI I   FI+     T ++     
Sbjct: 290 FLGIESGVQSVLDRFKKDTTVQDNIKAFEILGKF--DIQIRVGFIMFDELTTLEELSENF 347

Query: 352 DLVDKIG 358
           + + K+ 
Sbjct: 348 NFIRKVR 354


>gi|255744728|ref|ZP_05418679.1| lipoate synthase [Vibrio cholera CIRS 101]
 gi|255737759|gb|EET93153.1| lipoate synthase [Vibrio cholera CIRS 101]
          Length = 315

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 31/211 (14%), Positives = 70/211 (33%), Gaps = 12/211 (5%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V    G   +    +    A+ + D  +  + +   +    R    DG   
Sbjct: 88  CTRRCPFCDV--AHGRPNAPEAEEPKKLAQTIHDMKLKYVVITSVD----RDDLRDGGAQ 141

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
            F+D    +  +   +++       R   +  ++A  D     P +       + R+ + 
Sbjct: 142 HFADCNREIRALNPHIKIETLVPDFRGRMEVALEALKDNP---PDVFNHNLETAPRLYRK 198

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           +          +++ + +   P +   S  ++G  GET ++    +  +   G       
Sbjct: 199 VRPGANYKWSLELLRQFKEQHPHVPTKSGLMMGL-GETKEEIVEVLKDLRAHGVTMLTLG 257

Query: 366 KYSP--RLGTPGSNMLEQVDENVKAERLLCL 394
           +Y    R   P    +   + +   E  L L
Sbjct: 258 QYLAPSRHHLPVERYVPPAEFDELKEVALEL 288


>gi|239617942|ref|YP_002941264.1| Radical SAM domain protein [Kosmotoga olearia TBF 19.5.1]
 gi|239506773|gb|ACR80260.1| Radical SAM domain protein [Kosmotoga olearia TBF 19.5.1]
          Length = 482

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 46/314 (14%), Positives = 103/314 (32%), Gaps = 31/314 (9%)

Query: 82  SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNV---------VVGPQT 132
             L R +    S  + G   ++V+ G +       +   + +V++          +G   
Sbjct: 111 ELLRRFKVPLFSEERLGHHPVIVIGGALTYFNTALLELIADVVHIGDLSESFLSALGSLK 170

Query: 133 YYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTF 192
            Y   + +  A  G++    D   E++      +        G    + I   C + C F
Sbjct: 171 SYIDRKEIIAALSGQKGRTCDSCFEERLASGVFITPHSVF--GDRFLIEIGRSCFRKCRF 228

Query: 193 CVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLY 252
           CVV Y  G    R L +V+               +     +               +LL 
Sbjct: 229 CVVGYCFGPARFRGLDEVMKLMETASHLTNKFGLIAATVTDYPY----------LEELLN 278

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
            + +     ++  ++     +++ L+              +  + GS R+     +  + 
Sbjct: 279 FIEKRD--YQVSVSSLRLDALNEKLLTILRKSGQ--EQFTIAPEGGSQRLRNLYGKGISG 334

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFR---ATMDLVDKIGYAQAFSF--KY 367
            +    + ++  +     +   +I G   E+++D R    T  L  ++GY++        
Sbjct: 335 EQILSAL-KLGRMVGFRHVKLYYIYGAVFESEEDRREIVETAKLCRELGYSKVTLSLNPL 393

Query: 368 SPRLGTPGSNMLEQ 381
            P+ GTP   +  Q
Sbjct: 394 IPKPGTPLGALPMQ 407


>gi|119897798|ref|YP_933011.1| hypothetical protein azo1507 [Azoarcus sp. BH72]
 gi|119670211|emb|CAL94124.1| conserved hypothetical protein [Azoarcus sp. BH72]
          Length = 709

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 41/270 (15%), Positives = 76/270 (28%), Gaps = 42/270 (15%)

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAF--------LTIQEGCDKFCTFC 193
                   V       D    L      +   +G            + I  GC   CTFC
Sbjct: 312 EVWLNPPPVPLSTPEMDFVYGLPYARQPHPAYKGARIPAWDMIKFSVNIMRGCFGGCTFC 371

Query: 194 VVPYTRGIEI-SRSLSQVVDEARKLIDNG----VCEITLLGQNVNAWRGKGLD------- 241
            +    G  I SRS   ++ E  ++ D           L G   N +R    D       
Sbjct: 372 SITEHEGRIIQSRSEQSILREIEEIRDKSPDFKGHISDLGGPTANMYRMACKDPKIEQSC 431

Query: 242 ---------------GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL-- 284
                           +      +      + G+ R+   +    D++    +   +L  
Sbjct: 432 RRLSCVYPGICENLGTDHGPLIQIYRKARALPGIKRITIGSGLRYDLAVRSPEYVKELVT 491

Query: 285 DVLMPYLHLPVQSGSDRILKSMNRRHTA--YEYRQIIDRI-RSVRPDIAISSDFIVGFPG 341
             +   L +  +   +  L  M +        +R++ ++  +       +   FI   PG
Sbjct: 492 HHVSGLLKIAPEHSEEGPLSKMMKPGMGAYEAFRKLFEKYSKEAGKKQHLVPYFIAAHPG 551

Query: 342 ETDDDFRATMDLVD--KIGYAQAFSFKYSP 369
            TD+D       +        Q  +F  +P
Sbjct: 552 TTDEDMLNLALWLKANDFRLDQVQTFLPTP 581


>gi|318042661|ref|ZP_07974617.1| Elongator protein 3/MiaB/NifB [Synechococcus sp. CB0101]
          Length = 878

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 42/255 (16%), Positives = 81/255 (31%), Gaps = 36/255 (14%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGK 238
           + I+ GC + C FC                V++     ++  G  + +LL          
Sbjct: 273 VEIRRGCTRGCRFCQPGMLTRPARDVEPEAVIEAIETGMERTGYSDFSLLS-----LSCS 327

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
                     +L   L+     V L   +       + +    G        L    ++G
Sbjct: 328 DYLALPAVGVELRNRLA--DKNVSLTLPSQRVDRFDENIAHILGGTRKA--GLTFAPEAG 383

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPD--IAISSDFIVGFPGETDDD---FRATMDL 353
           + R+   +N+  T     +++  IR+   +    +   F++G PGETD D      T   
Sbjct: 384 TQRLRDIVNKGLTDE---ELLRGIRTAMENGYRKVKLYFMIGLPGETDADVIGIADTCRS 440

Query: 354 VDKIGYA------QAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLRE------- 400
           + +                ++P+  TP       V       R   L+ +LR        
Sbjct: 441 LQQQCRDLGRLELNLTISNFTPKPHTPFQ--WHSVSTAEFQRRQQLLRDELRRMRGIKTN 498

Query: 401 ---QQVSFNDACVGQ 412
               ++S  +  VG+
Sbjct: 499 YTDIRLSAMEDFVGR 513


>gi|261879381|ref|ZP_06005808.1| radical SAM domain protein [Prevotella bergensis DSM 17361]
 gi|270333948|gb|EFA44734.1| radical SAM domain protein [Prevotella bergensis DSM 17361]
          Length = 673

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 51/297 (17%), Positives = 99/297 (33%), Gaps = 62/297 (20%)

Query: 139 LLERARFGKRVVDTDYSVEDKFERLSIVDGGYNR-------KRGVTAFLTI------QEG 185
           LL+       VV+  Y      E  +  D  Y R        + + A+  I        G
Sbjct: 256 LLQAVDNVYAVVNPPYPPMTTEELDAAFDLPYTRLPHPKYKDKTIPAYEMIKFSINMHRG 315

Query: 186 CDKFCTFCVVPYTRGIEIS-RSLSQVVDEARKLIDN-GVCEIT--LLGQNVNAWRGKG-- 239
           C   C+FC +   +G  +S RS   ++ EAR++ID  G       L G + N +  +G  
Sbjct: 316 CFGGCSFCTISAHQGKFVSCRSKQSILREARQIIDMPGFKGYISDLGGPSANMYGMRGKN 375

Query: 240 --------------------LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIK 279
                               L+ +     ++  ++  + G+ +          +   LI 
Sbjct: 376 LKICEKCKRPSCINPAICPNLNTDHSDLLEIYRAVDALPGVKKSFIG----SGVRYDLIL 431

Query: 280 AHGDLDVLM----PYLH------------LPVQSGSDRILKSMNRRH--TAYEYRQIIDR 321
                + +      Y H            +  +  S  +L  M +      YE+++I D+
Sbjct: 432 HKSKDEKVNQAAGKYAHELIKNHVSGRLKVAPEHTSQHVLAYMRKPAFDQFYEFKRIFDK 491

Query: 322 I-RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
           + +    +  I   FI   PG  ++D      +   + +       ++P   T  + 
Sbjct: 492 VNKEEGLNQQIIPYFISSHPGCREEDMAELAVITKNLNFHLEQVQDFTPTPMTVSTE 548


>gi|254832064|ref|ZP_05236719.1| radical SAM protein, family [Listeria monocytogenes 10403S]
          Length = 321

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 41/195 (21%), Positives = 73/195 (37%), Gaps = 19/195 (9%)

Query: 188 KFCTFCVVPYTRGIEISRSLS------QVVDEARKLIDNGVCEITLLG-QNVNAWRGKGL 240
             CTFC    +     +R+L       QV D+ +    +G C        N +A   +  
Sbjct: 52  GGCTFCSAAGSGDFAGNRALDLKIQFQQVRDKMQTKWKDGKCIAYFQAFTNTHAPVAE-- 109

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL-DVLMPYLHLPVQSGS 299
                   +   ++    G+V L    + P  + D +++   +L +    +L L +QS  
Sbjct: 110 ------LREKFETVLNEPGVVGLSI-ATRPDCLPDDVVEYLAELNERTYLWLELGLQSAH 162

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
           D   + +NR H    Y + + +++    +I I +  I G P ET +    T   V + G 
Sbjct: 163 DETGRLINRAHDYDCYLEGVRKLQK--HNIRICTHIINGLPKETPEMMMETTRKVVESGV 220

Query: 360 AQAFSFKYSPRLGTP 374
                       GTP
Sbjct: 221 DGIKIHLLHLLKGTP 235


>gi|294501698|ref|YP_003565398.1| lipoic acid synthetase [Bacillus megaterium QM B1551]
 gi|295707046|ref|YP_003600121.1| lipoic acid synthetase [Bacillus megaterium DSM 319]
 gi|294351635|gb|ADE71964.1| lipoic acid synthetase [Bacillus megaterium QM B1551]
 gi|294804705|gb|ADF41771.1| lipoic acid synthetase [Bacillus megaterium DSM 319]
          Length = 299

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 34/214 (15%), Positives = 74/214 (34%), Gaps = 13/214 (6%)

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           ++V ++    +I +    R+     F+ + E C + C FC V      E+   L +    
Sbjct: 37  HTVCEEARCPNIHECWAVRR--TATFMILGEVCTRACRFCAVKTGLPTEL--DLEEPERV 92

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
           A  +    +    +        R    DG     ++ + ++        +    S    +
Sbjct: 93  ADSVQLMNLKHAVIT----VVARDDLKDGGASVLAETIRAIRRKNPFTTIEVLPSDMGGV 148

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
            + L         ++ +    V+S +      +  R       + + R + ++PDI   S
Sbjct: 149 EENLRIVMDARPDILNHNIETVRSLTP----RVRARAKYERSLEFLRRAKEMQPDIPTKS 204

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
             ++G  GET ++   TMD +           +Y
Sbjct: 205 SIMLGL-GETKEEIIETMDDLRANNVDIMTLGQY 237


>gi|153002947|ref|YP_001377272.1| radical SAM domain-containing protein [Anaeromyxobacter sp.
           Fw109-5]
 gi|152026520|gb|ABS24288.1| Radical SAM domain protein [Anaeromyxobacter sp. Fw109-5]
          Length = 658

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 60/349 (17%), Positives = 104/349 (29%), Gaps = 67/349 (19%)

Query: 131 QTYYRLPELLERARFGKR----VVDTDYSVEDKFERLSIVDGGYNRKRGVTA-------- 178
                   L++R   G+R    VV+   +     E   I +  Y R+   +         
Sbjct: 276 HNAENARILVQRHGRGERARFVVVNEPMAAPSTEELDRIAELPYVREAHPSYGGAHIPAL 335

Query: 179 -----FLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDNGVCEITLL---G 229
                 + I  GC   C FC +   +G +I SRS + V+ E   L      + T+    G
Sbjct: 336 EQIRWSIQILRGCAAGCAFCCITEHQGRDIASRSEASVLRELATLASKESFKGTITDVGG 395

Query: 230 QNVNAWRGKGLDGEKCT----------------------FSDLLYSLSEIKGLVRLRYTT 267
              N W  +  D E                           DL     ++KG+  L   +
Sbjct: 396 ATANMWGMRCTDAEAHAVCRRASCVYPTVCKFFAVDHGPLVDLYEKARKVKGVKHLFVGS 455

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQ------SGSDRILKSMNRRH--TAYEYRQII 319
               D++    K        +   H+  Q         + +LK M +    +    R+  
Sbjct: 456 GVRYDLAQADTKNGARYLKTLVQHHVSGQLKVAPEHVCEPVLKLMKKPGVSSFERLRKDF 515

Query: 320 DRI-RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           +R  R    +  +   FI   PG + +     MD +    +       + P   T  S+M
Sbjct: 516 ERYSREAGKEQYLVPYFISSHPGSSLEQAAELMDYLQDNRWKPQQVQDFMPTPMTLASDM 575

Query: 379 L---------------EQVDENVKAERLLCLQKKLREQQVSFNDACVGQ 412
                             +DE    + LL          +      +G+
Sbjct: 576 YWSGYHPMTGEPVHVTRDMDEKRMQKALLRWGDPANRPLIEKALRKLGR 624


>gi|117921487|ref|YP_870679.1| putative radical SAM protein [Shewanella sp. ANA-3]
 gi|117613819|gb|ABK49273.1| conserved hypothetical radical SAM protein [Shewanella sp. ANA-3]
          Length = 309

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 51/241 (21%), Positives = 84/241 (34%), Gaps = 40/241 (16%)

Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW--------RGKG 239
             CTFC V        S   ++ +    + ++ G          +NA             
Sbjct: 43  GGCTFCNV-----ASFSYQQAETL-SISEQLEQGKARYKEAKPKLNADKFIAYFQAYTST 96

Query: 240 LDGEKCTFSDLLYSL--SEIKGLVRLRYTTSHPRDMSDCLIKAHGDL--DVLMPYLHLPV 295
            D  +   +    ++  SEI GL       + P  + D ++          +  +L L +
Sbjct: 97  YDEYQVLMAKYDEAVKDSEIVGL----CVGTRPDCVPDNVLDLLASYQQKGVDVWLELGL 152

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
           Q+ +DR L  +NR H    Y   + R RS    + + +  I+G PGET  D+ AT+  V 
Sbjct: 153 QTANDRTLHKINRGHDFACYCDTVARARSR--GLKVCTHLILGLPGETHLDYMATLQAVL 210

Query: 356 KIGYAQAFSFKYSPRLG-TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQII 414
             G             G T             +A RL  L        +    ACVG+++
Sbjct: 211 AQGVDGLKLHPLHVVEGSTMAKAW--------RAGRLPLL-------SIEEYAACVGELV 255

Query: 415 E 415
            
Sbjct: 256 R 256


>gi|126665806|ref|ZP_01736787.1| coproporphyrinogen III oxidase [Marinobacter sp. ELB17]
 gi|126629740|gb|EBA00357.1| coproporphyrinogen III oxidase [Marinobacter sp. ELB17]
          Length = 503

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 46/238 (19%), Positives = 84/238 (35%), Gaps = 22/238 (9%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C   C +C         I++  +      ++L+     +  L G +    +   L G   
Sbjct: 106 CAHLCYYC----ACNKVITKKRNNAQPYVQRLLKEAAMQAELFGAD-RPVKQLHLGGGTP 160

Query: 246 TF--SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKA-HGDLDVLMPYLHLPV------- 295
           TF   D++  L  I G   L    +         I     D D L     L         
Sbjct: 161 TFLPRDVMREL--IHGYGELFNLQTDGSHDYSIEIDPREVDQDTLSTLWELGFNRISLGV 218

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
           Q  + ++ K++NR  +    R +++  R +    +I+ D I G P +T D F AT++ V 
Sbjct: 219 QDVNPQVQKAVNRVQSKEMTRGVLNEARRLGFG-SINLDLIYGLPYQTPDSFAATLEEVI 277

Query: 356 KIGYAQAFSFKY--SPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVG 411
            +   +   F Y   P    P + +          ++L  L   +    V+  +  +G
Sbjct: 278 DMSPDRLSVFSYAHLPERFYPQTRLKGDTMP-TPQQKLTILHNTINRLLVAGYE-YIG 333


>gi|332753075|gb|EGJ83459.1| radical SAM superfamily protein [Shigella flexneri 4343-70]
          Length = 724

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 48/297 (16%), Positives = 98/297 (32%), Gaps = 58/297 (19%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDN--GVCEIT--LLGQNVNA 234
           + I  GC   C+FC +    G  I SRS   +++E   + D   G   +   L G   N 
Sbjct: 380 VNIMRGCFGGCSFCSITEHEGRIIQSRSEDSIINEIEAIRDTVPGFTGVISDLGGPTANM 439

Query: 235 WR----------------------GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
           +                          +D       +L     ++KG+ ++   +    D
Sbjct: 440 YMLRCKSPRAEQTCRRLSCVYPDICPHMDTNHEPTINLYRRARDLKGIKKILIASGVRYD 499

Query: 273 MSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRRH--TAYEYRQIIDRI-RSVRP 327
           ++    +   +L    +  YL +  +   +  L  M +    +   ++++ D   +    
Sbjct: 500 IAVEDPRYIKELATHHVGGYLKIAPEHTEEGPLSKMMKPGMGSYDRFKELFDTYSKQAGK 559

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGY--AQAFSFKYSPRLGT---------PGS 376
           +  +   FI   PG  D+D       + K  +   Q  +F  SP   +         P +
Sbjct: 560 EQYLIPYFISAHPGTRDEDMVNLALWLKKHRFRLDQVQNFYPSPLANSTTMYYTGKKPLA 619

Query: 377 NMLEQ-----VDENVKAERL-LCLQK--------KLREQQVSF-NDACVGQIIEVLI 418
            +  +     V +  K  RL   L +         +R+   +      +G   + L+
Sbjct: 620 KIGYKSEGVFVPKGDKQRRLHKALLRYHDPANWPLIRQALEAMGKKHLIGSRRDCLV 676


>gi|311067471|ref|YP_003972394.1| coproporphyrinogen III oxidase [Bacillus atrophaeus 1942]
 gi|310867988|gb|ADP31463.1| coproporphyrinogen III oxidase [Bacillus atrophaeus 1942]
          Length = 500

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 43/252 (17%), Positives = 93/252 (36%), Gaps = 23/252 (9%)

Query: 129 GPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
           G   +    EL +        +     + D+  +L+ V   Y  K  V+ ++ I   C  
Sbjct: 127 GMTQHQAHAELKKDYLIHDEKISLMQQIVDR--QLAAVPDLYQVKDEVSIYIGIPF-CPT 183

Query: 189 FCTFCVVPYTR-----GIEISR------SLSQVVDEARKLIDNGVCEITLLGQNVNAWRG 237
            C +C  P        G   S        + ++ +  ++  +  V  I   G    +   
Sbjct: 184 KCAYCTFPAYAIQGQAGRVGSFLWGLHFEIQKIGEWLKRH-EIKVTTIYFGGGTPTSITA 242

Query: 238 KGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQS 297
           + +D     + +++ S  ++K +  +      P  +++  +       +    + +  QS
Sbjct: 243 EEMDL---LYEEMVRSFPDVKQIREITVEAGRPDTITEEKLDVLNKYHI--DRISINPQS 297

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA-ISSDFIVGFPGETDDDFRATMDLVDK 356
             +  LK++ R HT  E  +     R     ++ I+ D I+G PGE  ++FR ++   +K
Sbjct: 298 YENETLKAIGRHHTVEETIEKYHLSRE--HGMSNINMDLIIGLPGEGVEEFRNSLRETEK 355

Query: 357 IGYAQAFSFKYS 368
           +          S
Sbjct: 356 LMPESLTVHTLS 367


>gi|223040541|ref|ZP_03610813.1| biotin synthase [Campylobacter rectus RM3267]
 gi|222878176|gb|EEF13285.1| biotin synthase [Campylobacter rectus RM3267]
          Length = 350

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 31/231 (13%), Positives = 83/231 (35%), Gaps = 19/231 (8%)

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKR-GVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
           ++++  D   E  FE  + V   + ++   + A + I   C K C +C +          
Sbjct: 22  EKIIADDEDCEYLFEAANRVRQKFVKQEVHLKALIEISNICAKECFYCGLRSKNKDIKRY 81

Query: 206 --SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
             S  ++V  A++   +G   + +      A++   +        +++  + +    + L
Sbjct: 82  KMSAEEIVSRAKEAAMSGYKTVVMQSGESGAFKDDEI-------CEIIREIKKFDVQITL 134

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
            +      + S    +A+           L +++    + K+++   +     + ++ +R
Sbjct: 135 SFG-----EKSFEQYRAYKKAG--ADRYLLRIETADRALYKALHPNMSLKNRIKCLENLR 187

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
           ++       S  +VG PG +       +  + K  +       + P   TP
Sbjct: 188 NL--GYETGSGLLVGLPGSSAKILARDLMFLKKYDFDMIGIGPFIPATNTP 236


>gi|139439729|ref|ZP_01773120.1| Hypothetical protein COLAER_02151 [Collinsella aerofaciens ATCC
           25986]
 gi|133774879|gb|EBA38699.1| Hypothetical protein COLAER_02151 [Collinsella aerofaciens ATCC
           25986]
          Length = 542

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 30/168 (17%), Positives = 59/168 (35%), Gaps = 11/168 (6%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGK 238
           + I  GC + C FC    T      RS  Q+V    + ++  G  E++L   +       
Sbjct: 185 IEILRGCARGCRFCQAGMTYRPVRERSADQIVSSVIQGLEKTGYDEVSLTSLSTTDHSCI 244

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
                +     L   L +    +R+   +         + ++          L    ++G
Sbjct: 245 -----RDVLGRLNRRLEDTG--IRVSIPSQRLDSFGVDMAESVAGEKK--GGLTFAPEAG 295

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDD 346
           S R+   +N+  T  +  +          +  +   F++G PGE D+D
Sbjct: 296 SQRMRDIINKNVTEEDLDRAAKAAFEAGWN-RMKLYFMMGLPGERDED 342


>gi|33241725|ref|NP_876666.1| coproporphyrinogen III oxidase [Chlamydophila pneumoniae TW-183]
 gi|33236234|gb|AAP98323.1| coproporphyrinogen oxidase III oxygen-independent [Chlamydophila
           pneumoniae TW-183]
          Length = 381

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 34/219 (15%), Positives = 77/219 (35%), Gaps = 14/219 (6%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C K C +C   +      S     V      +I  G+ ++  + Q  +        G   
Sbjct: 24  CTKKCRYC--SFYTIPYKS---ESVSLYCNAVIQEGLRKLAPI-QETHFIETVFFGGGTP 77

Query: 246 TF---SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
           +     DL   L E+    R     ++P +++   ++   +  +    + + VQ+  D I
Sbjct: 78  SLVSPLDLKRILKELAPHAREITLEANPENLTVSYLRQLQETPI--NRISVGVQTFDDSI 135

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIA-ISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
           L+ + R H++      +   ++     + +S D I G P ++ + F + +     +    
Sbjct: 136 LQLLGRTHSSSAAITALQECQN--HGFSNLSIDLIYGLPTQSLEIFLSDLHQALTLPITH 193

Query: 362 AFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLRE 400
              +  +    T      + +   +  E +L     L E
Sbjct: 194 ISLYNLTIDPHTSFYKHRKILVPTIAQEEILAEMSLLAE 232


>gi|16752659|ref|NP_444924.1| coproporphyrinogen III oxidase [Chlamydophila pneumoniae AR39]
 gi|8163419|gb|AAF73661.1| oxygen-independent coproporphyrinogen III oxidase HemN, putative
           [Chlamydophila pneumoniae AR39]
          Length = 394

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 34/219 (15%), Positives = 77/219 (35%), Gaps = 14/219 (6%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C K C +C   +      S     V      +I  G+ ++  + Q  +        G   
Sbjct: 37  CTKKCRYC--SFYTIPYKS---ESVSLYCNAVIQEGLRKLAPI-QETHFIETVFFGGGTP 90

Query: 246 TF---SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
           +     DL   L E+    R     ++P +++   ++   +  +    + + VQ+  D I
Sbjct: 91  SLVSPLDLKRILKELAPHAREITLEANPENLTVSYLRQLQETPI--NRISVGVQTFDDSI 148

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIA-ISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
           L+ + R H++      +   ++     + +S D I G P ++ + F + +     +    
Sbjct: 149 LQLLGRTHSSSAAITALQECQN--HGFSNLSIDLIYGLPTQSLEIFLSDLHQALTLPITH 206

Query: 362 AFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLRE 400
              +  +    T      + +   +  E +L     L E
Sbjct: 207 ISLYNLTIDPHTSFYKHRKILVPTIAQEEILAEMSLLAE 245


>gi|15618295|ref|NP_224580.1| coproporphyrinogen III oxidase [Chlamydophila pneumoniae CWL029]
 gi|15835913|ref|NP_300437.1| coproporphyrinogen III oxidase [Chlamydophila pneumoniae J138]
 gi|4376658|gb|AAD18524.1| Coproporphyrinogen III Oxidase [Chlamydophila pneumoniae CWL029]
 gi|8978752|dbj|BAA98588.1| coproporphyrinogen III oxidase [Chlamydophila pneumoniae J138]
          Length = 373

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 34/219 (15%), Positives = 77/219 (35%), Gaps = 14/219 (6%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C K C +C   +      S     V      +I  G+ ++  + Q  +        G   
Sbjct: 16  CTKKCRYC--SFYTIPYKS---ESVSLYCNAVIQEGLRKLAPI-QETHFIETVFFGGGTP 69

Query: 246 TF---SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
           +     DL   L E+    R     ++P +++   ++   +  +    + + VQ+  D I
Sbjct: 70  SLVSPLDLKRILKELAPHAREITLEANPENLTVSYLRQLQETPI--NRISVGVQTFDDSI 127

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIA-ISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
           L+ + R H++      +   ++     + +S D I G P ++ + F + +     +    
Sbjct: 128 LQLLGRTHSSSAAITALQECQN--HGFSNLSIDLIYGLPTQSLEIFLSDLHQALTLPITH 185

Query: 362 AFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLRE 400
              +  +    T      + +   +  E +L     L E
Sbjct: 186 ISLYNLTIDPHTSFYKHRKILVPTIAQEEILAEMSLLAE 224


>gi|261878816|ref|ZP_06005243.1| lipoyl synthase [Prevotella bergensis DSM 17361]
 gi|270334556|gb|EFA45342.1| lipoyl synthase [Prevotella bergensis DSM 17361]
          Length = 608

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 24/183 (13%), Positives = 60/183 (32%), Gaps = 15/183 (8%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC  P  R   +     +    A  +   G+    +   +    R    D    
Sbjct: 389 CTRRCRFCNTPSGRPELL--DPDEPRRVAESIRSLGLRYAVITSVD----RDDLSDYGAA 442

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
            +   +  +  +    ++          ++ + +       +  +         + + + 
Sbjct: 443 HWIRTVEEVRALNPNTKIELLIPDFMGDANLIRRVMDTRPHVTGHNI-------ETVRRL 495

Query: 306 MNRRHTAYEYRQIIDRIRSV-RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
                +   Y + ++ +R + R  I   + F++G  GET ++   TMD +   G  +   
Sbjct: 496 TPSVRSVARYERSLEVLREITRCGITAKTGFMLGL-GETHEEVLETMDDILATGCRRLTI 554

Query: 365 FKY 367
            +Y
Sbjct: 555 GQY 557


>gi|239904942|ref|YP_002951680.1| cobalamin vitamin B12-binding domain/radical SAM domain protein
           [Desulfovibrio magneticus RS-1]
 gi|239794805|dbj|BAH73794.1| cobalamin vitamin B12-binding domain/radical SAM domain protein
           [Desulfovibrio magneticus RS-1]
          Length = 510

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 52/283 (18%), Positives = 96/283 (33%), Gaps = 28/283 (9%)

Query: 107 GCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIV 166
           GC+AQ     + +     + +  P   +    + +       +V    ++ + F    + 
Sbjct: 152 GCLAQNPVRPLTQDL---DSLPPPDWSHDDHHIWDPEHPQDGIVPLTPAMTEAF----LA 204

Query: 167 DGGYNRKRGVTAFLTIQ-EGCDKFCTFCV---VPYTRGI---EISRSLSQVVDEARKLID 219
            G  +R  G   + T+   GC   C +CV   V    G       R    V+ E      
Sbjct: 205 RGTVSRLLGRVGYQTMTGRGCPHRCAYCVNDAVKALYGAKGYLRWRGTEHVMAELE---- 260

Query: 220 NGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS-HPRDMSDCLI 278
                +     ++                ++     + K  V L +T    P  ++   +
Sbjct: 261 ----TVRRTLPHIGYVWISDDAFFARPLEEIREFCRQWKARVGLPFTCLGSPATITREKL 316

Query: 279 KAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA-YEYRQIIDRIRSVRPDIAISS-DFI 336
            A  D  +   YL + VQ+GS RI +  NR+        + +  I + +  +   S DFI
Sbjct: 317 DALTDAGLC--YLQMGVQTGSARIQELFNRKAMGNAVMLKAMAVINAYKDKLLPPSYDFI 374

Query: 337 VGFPGETDDDFRATMDLVDKIGYA-QAFSFKYSPRLGTPGSNM 378
           +  P ET  D   ++  + +I    +   F      GT    M
Sbjct: 375 LDTPYETLADRLESVRFIAQIPKPFRLQPFSLVLYPGTKLHAM 417


>gi|261367283|ref|ZP_05980166.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Subdoligranulum variabile DSM 15176]
 gi|282570886|gb|EFB76421.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Subdoligranulum variabile DSM 15176]
          Length = 356

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 3/92 (3%)

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV-RPDIAISSDFIVGFPGETDDDFRA 349
           +   VQS  D  LK + R HTA    + +   R    P+I    D ++  P  ++ +F A
Sbjct: 108 ISFGVQSADDVQLKRLGRTHTAAGAAEALQWARQAGFPEIC--GDIMLALPNYSNAEFDA 165

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           T+DL+ + G     ++      GT  +     
Sbjct: 166 TLDLLQQGGCTHISAYLLKIEPGTAFAKFPPD 197


>gi|313637790|gb|EFS03140.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Listeria seeligeri FSL S4-171]
          Length = 384

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 77/198 (38%), Gaps = 6/198 (3%)

Query: 186 CDKFCTFCVV--PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
           C+  C +C     +  G  +   +  ++ E +    N   E       V    G      
Sbjct: 20  CEHICYYCDFNKVFLEGQPVDEYVDLLIKEMQITAANKQMEPI---DTVFVGGGTPTTLN 76

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
           +   + L  ++ EI  +      +         + K     D  +  + + VQS ++ +L
Sbjct: 77  EAQIAKLCTAIQEIFPMKEEVEFSFEANPGDLSVAKVQTMKDYGVNRISMGVQSFNNDLL 136

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           K + R HT  +  Q ++ +R+V  +  +S D I   PG+T+ DF+ T++    +      
Sbjct: 137 KKIGRIHTVKDVYQSVENMRTVGFE-NVSIDLIFSLPGQTEADFQDTLNQALALDLPHYS 195

Query: 364 SFKYSPRLGTPGSNMLEQ 381
           ++       T   N++++
Sbjct: 196 AYSLIIEPKTIFYNLMQK 213


>gi|269123869|ref|YP_003306446.1| oxygen-independent coproporphyrinogen III oxidase [Streptobacillus
           moniliformis DSM 12112]
 gi|268315195|gb|ACZ01569.1| oxygen-independent coproporphyrinogen III oxidase [Streptobacillus
           moniliformis DSM 12112]
          Length = 360

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 87/230 (37%), Gaps = 21/230 (9%)

Query: 186 CDKFCTFCVVPYT--RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
           C+K C +C          +I R +  V+ E +   +     I   G   +   G+     
Sbjct: 14  CNKRCHYCDFHVFINMNDKIERYVEYVIKEIKLYPEYIYDTIYFGGGTPSLLNGE----- 68

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTT-SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
                 +   L  +K       T   +P DM    +K   +  +    L +  QS +D +
Sbjct: 69  -----QIRKILDNLKKTDNAEITLELNPSDMDLEKLKYIKNAGI--NRLSIGFQSFNDDM 121

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           LK MNR H++ +  +     R    D  IS D I   P +  +     +D   ++     
Sbjct: 122 LKFMNRDHSSKKAIETYRNARIAGFD-NISLDLIFSVPNQDMEMLENDLDKFLELSPEHL 180

Query: 363 FSFKYSPRLGTPGSNMLEQ-----VDENVKAERLLCLQKKLREQQVSFND 407
             +      GT  +  LE+     +DE+++A+  L +Q++L +   +  +
Sbjct: 181 SIYSLIWEEGTNFTKRLEKGELKALDEDLEADMFLKIQERLVKSGYNHYE 230


>gi|332752690|gb|EGJ83075.1| radical SAM superfamily protein [Shigella flexneri K-671]
          Length = 724

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 48/297 (16%), Positives = 98/297 (32%), Gaps = 58/297 (19%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDN--GVCEIT--LLGQNVNA 234
           + I  GC   C+FC +    G  I SRS   +++E   + D   G   +   L G   N 
Sbjct: 380 VNIMRGCFGGCSFCSITEHEGRIIQSRSEDSIINEIEAIRDTVPGFTGVISDLGGPTANM 439

Query: 235 WR----------------------GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
           +                          +D       +L     ++KG+ ++   +    D
Sbjct: 440 YMLRCKSPRAEQTCRRLSCVYPDICPHMDTNHEPTINLYRRARDLKGIKKILIASGVRYD 499

Query: 273 MSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRRH--TAYEYRQIIDRI-RSVRP 327
           ++    +   +L    +  YL +  +   +  L  M +    +   ++++ D   +    
Sbjct: 500 IAVEDPRYIKELATHHVGGYLKIAPEHTEEGPLSKMMKPGMGSYDRFKELFDTYSKQAGK 559

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGY--AQAFSFKYSPRLGT---------PGS 376
           +  +   FI   PG  D+D       + K  +   Q  +F  SP   +         P +
Sbjct: 560 EQYLIPYFISAHPGTRDEDMVNLALWLKKHRFRLDQVQNFYPSPLANSTTMYYTGKKPLA 619

Query: 377 NMLEQ-----VDENVKAERL-LCLQK--------KLREQQVSF-NDACVGQIIEVLI 418
            +  +     V +  K  RL   L +         +R+   +      +G   + L+
Sbjct: 620 KIGYKSEGVFVPKGDKQRRLHKALLRYHDPANWPLIRQALEAMGKKHLIGSRRDCLV 676


>gi|331268841|ref|YP_004395333.1| radical SAM domain-containing protein [Clostridium botulinum
           BKT015925]
 gi|329125391|gb|AEB75336.1| radical SAM domain protein [Clostridium botulinum BKT015925]
          Length = 348

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 30/204 (14%), Positives = 73/204 (35%), Gaps = 30/204 (14%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIE-ISR-SLSQVVDEARKLIDNGVCEITLLGQNVNAWRG 237
           +     C   CT+C +          R SL +++    +    G     L G        
Sbjct: 56  IEFTNYCKNTCTYCGIRVFNKKVDRYRLSLDEIIHSCSEGYRLGYRTFVLQG-------- 107

Query: 238 KGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP--- 294
               GE   F+D    + +I   ++L +      + +  L       +    Y +     
Sbjct: 108 ----GEDNYFTD--DKIVKIVTKIKLNFP-----ECAITLSIGEKSYESYKKYYNAGADR 156

Query: 295 ----VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
                ++ S +I + ++   +    R+ +  ++ +     + + F++G PG+T++D+   
Sbjct: 157 YLLRHETASKKIYEKLHPGMSFENRRKCLRNLKEI--GYQVGAGFMIGIPGQTNEDYAED 214

Query: 351 MDLVDKIGYAQAFSFKYSPRLGTP 374
           +  + ++         + P+  TP
Sbjct: 215 LLFLKELEPHMVGIGPFIPQCDTP 238


>gi|226525274|gb|ACO70874.1| lipoic acid synthetase [uncultured Verrucomicrobia bacterium]
          Length = 299

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 33/225 (14%), Positives = 72/225 (32%), Gaps = 11/225 (4%)

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
             F  + +  D  +    E     +       G   F+   + C + C FC V   +   
Sbjct: 28  VFFSTKTLIEDLRLHTVCESAQCPNRWECWSSGTATFMIAGDRCTRACGFCAVTTAKPFA 87

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
           +     +    A  +    +  + +        R    DG    F+  + ++ +I   + 
Sbjct: 88  L--EADEPERVAEAVQRMRLKHVVITAV----ARDDLRDGGAEHFAQTIEAIRKIDPQIV 141

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +   T       DCL         +  +    V+  +   L     ++       ++ R+
Sbjct: 142 IEVLTPDFHAKDDCLRAVADARPHIFNHNLETVERLTP--LVRSRSKYLVS--LAVLRRM 197

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           + + P I   S  ++G  GET+ +    MD + +         +Y
Sbjct: 198 KEIAPSIVTKSGLMLGL-GETEPEIFQAMDDLRESNVQVLTIGQY 241


>gi|239637605|ref|ZP_04678577.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Staphylococcus warneri L37603]
 gi|239596823|gb|EEQ79348.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Staphylococcus warneri L37603]
          Length = 377

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 36/228 (15%), Positives = 85/228 (37%), Gaps = 12/228 (5%)

Query: 186 CDKFCTFCVV-PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK 244
           C + CT+C    Y    +    + + +D     ++            +    G       
Sbjct: 13  CVRICTYCDFNKYFIDKQ---PVDEYLDSLILEMERRTLNDNTTLNTMYVGGGTPTALNI 69

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304
              + LL +++ I  +       ++P +++   +K        +  + + VQ+    +L+
Sbjct: 70  EQLNKLLSAINRIFTIEGEFSFEANPDELTFEKVKLLKSYG--VNRISMGVQTFKPELLE 127

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
            + R H   +  Q ++  R    + +IS D +   P +T +DF  +++L  ++      S
Sbjct: 128 ILGRTHKTEDIYQAVNNARKAGIE-SISLDLMYHLPKQTLEDFEDSLNLAMQMDIDHISS 186

Query: 365 FKYSPRLGTPGSNMLEQ-----VDENVKAERLLCLQKKLREQQVSFND 407
           +       T   NM  +      +E++ AE    L  K+ + +    +
Sbjct: 187 YGLILEPKTQFYNMYRKGHLKLPNEDLGAEMYQKLMHKIEDSRFHQYE 234


>gi|313903956|ref|ZP_07837336.1| Radical SAM domain protein [Eubacterium cellulosolvens 6]
 gi|313471105|gb|EFR66427.1| Radical SAM domain protein [Eubacterium cellulosolvens 6]
          Length = 622

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 54/326 (16%), Positives = 103/326 (31%), Gaps = 56/326 (17%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
           L IQ GC + C FC           +++ ++  +A  ++ N           +       
Sbjct: 263 LEIQRGCIRGCRFCQAGMLYRPLREKNVEKLKQQAEIMLKNTGY------DEITLSSLSS 316

Query: 240 LDGEKCTFSDLLYSLSEI--KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQS 297
            D       +LL  L EI  +  + +   +      S  ++    D+      L    ++
Sbjct: 317 SDY--SQLDELLNFLIEICKEKGINISLPSLRIDAFSLDIMSKVQDVKK--SSLTFAAEA 372

Query: 298 GSDRILKSMNRRHTAYEYRQ-IIDRIRSVRPDIAISSDFIVGFPGETDDDFRA---TMDL 353
           GS R+   +N+  T        ++  +     +     F++G PGET++D +        
Sbjct: 373 GSQRMRNVINKGITEENIMNGALEAFKGGWNKVKFY--FMLGHPGETEEDIKDIAHLCQR 430

Query: 354 VDKIGYAQ-------------AFSFKYSPRLGTPGSNMLEQVDEN-------VKAERLLC 393
           V +  Y               A S  + P+  TP        ++        VK E  + 
Sbjct: 431 VAECYYDNIPKEERVGKISITASSSFFVPKPFTPFQWAPMNTEQEFLDKAHMVKDE--VR 488

Query: 394 LQKKLREQQVSFNDACVGQIIEVL----------IEKHGKEKGKLVGRSPWLQSVVLNSK 443
                +  + +++DA V ++  VL          IE+           +        N  
Sbjct: 489 AMPNQKSIRYTYHDAYVSELEGVLARGDRRVAAAIEEAYNSGCIFDAWTENFDREKWNQA 548

Query: 444 NHNIG-D--IIKVR---ITDVKISTL 463
               G D      R   I ++    L
Sbjct: 549 FEKTGIDPYFYTARARSIDEILPWDL 574


>gi|168183660|ref|ZP_02618324.1| radical SAM domain protein [Clostridium botulinum Bf]
 gi|237797040|ref|YP_002864592.1| biotin synthase [Clostridium botulinum Ba4 str. 657]
 gi|182673219|gb|EDT85180.1| radical SAM domain protein [Clostridium botulinum Bf]
 gi|229262071|gb|ACQ53104.1| radical SAM domain protein [Clostridium botulinum Ba4 str. 657]
          Length = 348

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 29/224 (12%), Positives = 72/224 (32%), Gaps = 18/224 (8%)

Query: 153 DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI-EISR-SLSQV 210
           D      F+        YN K  +   +     C   C +C +       E  R S  ++
Sbjct: 29  DSKKYLIFKSHETRLKHYNNKVYLRGLIEFTNYCKNSCLYCGISCRNNNAERYRLSKEEI 88

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270
           +    K    G     L G       G+          +++ S+ ++     +  +    
Sbjct: 89  LKCCSKGYSLGYRTFVLQG-------GEDPYYTDDKIINIVKSIKKLFPDCAITLSIGEK 141

Query: 271 RDMSDC-LIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329
              +      A  D         L  ++ S  + + ++   +    R  ++ ++ +    
Sbjct: 142 SYETYRKFYDAGADR------YLLRHETASKNLYEKLHPDMSFENRRSCLENLKKI--GY 193

Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
            + + F++G P +T++D+   +  + ++         + P   T
Sbjct: 194 QVGAGFMIGLPNQTNEDYVNDLIFLKELKPHMVGIGPFIPHKNT 237


>gi|255994897|ref|ZP_05428032.1| putative radical SAM domain protein [Eubacterium saphenum ATCC
           49989]
 gi|255993610|gb|EEU03699.1| putative radical SAM domain protein [Eubacterium saphenum ATCC
           49989]
          Length = 504

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 33/206 (16%), Positives = 66/206 (32%), Gaps = 10/206 (4%)

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           R   R +          + L       + K     +     G     T+  +        
Sbjct: 147 RQSGRAIKNPEPSNVVLDTLPFAYQNASIKGKKAIYYETSRGVRFASTYSNIKSVEKP-R 205

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
              +  V  +    +  G+ +I ++  N N    +  D        LL  + E+      
Sbjct: 206 MLEIDIVKRDISYFVMQGIKDIYIVDSNFNWDLERTHD--------LLRYMQEVSNESVH 257

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
            +   +   + + LI         M  +   + S   + L ++NRRH A +  +II++I 
Sbjct: 258 FHLNMNAEVVDEKLIDILRKSSRGMFTITFNLVSLDKKTLYAVNRRHAALDELEIIEKIA 317

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRA 349
               ++ +    I G P E  + F  
Sbjct: 318 KAT-EVKVIVSLIAGLPFEKMEQFIE 342


>gi|33594888|ref|NP_882531.1| lipoyl synthase [Bordetella parapertussis 12822]
 gi|47117179|sp|Q7W222|LIPA_BORPA RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|33564964|emb|CAE39911.1| lipoic acid synthetase [Bordetella parapertussis]
          Length = 333

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 39/236 (16%), Positives = 80/236 (33%), Gaps = 21/236 (8%)

Query: 140 LERARFGKRVVDT-----DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCV 194
           +  A  G R  D      ++++    E  S  + G    +G   F+ + + C + C FC 
Sbjct: 55  VRAAAPGSRFYDIKRILREHNLHTVCEEASCPNIGECFGKGTATFMIMGDKCTRRCPFCD 114

Query: 195 VPYTRGIEISRSLS--QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLY 252
           V + R       L   +  + AR +    +  + +   +    R    DG    F + + 
Sbjct: 115 VGHGRPD----PLDTQEPENLARTIAALKLSYVVITSVD----RDDLRDGGAAHFVECIA 166

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV-LMPYLHLPVQSGSDRILKSMNRRHT 311
            + E     R+       R   D  +         +M +    V     R+ K       
Sbjct: 167 KVREYSPDTRIEVLVPDFRGRLDRALHILNSGPPDVMNHNLETV----PRLYKQARPGSD 222

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
                +++   + + P++   S  ++G  GETD++    M  + +         +Y
Sbjct: 223 YAHSLKLLVEFKKLHPEVPTKSGLMLGL-GETDEEILQVMRDMREHNVDMLTIGQY 277


>gi|302037208|ref|YP_003797530.1| hypothetical protein NIDE1878 [Candidatus Nitrospira defluvii]
 gi|300605272|emb|CBK41605.1| conserved protein of unknown function, radical SAM [Candidatus
           Nitrospira defluvii]
          Length = 730

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 40/201 (19%), Positives = 71/201 (35%), Gaps = 25/201 (12%)

Query: 164 SIVDGGYNRKRGVTAFLTIQEGCDKF-CTFCVVPYTRGIEISR----SLSQVVDEARKLI 218
           S+         G    LT+  GC    CTFC V       ISR        ++D+   LI
Sbjct: 336 SLNPMHRLWSEGHWNKLTVAHGCYWKQCTFCDVGL---NYISRYEMTPTDVLIDQIEALI 392

Query: 219 DNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK-GLVRLRYTTSHPRD-MSDC 276
                      Q         +D      +    +L  ++ GL    +      +  S  
Sbjct: 393 -----------QETGQRGFHFVDEAAPPAALKALALRLLETGLTISWWGNIRFEEAFSPD 441

Query: 277 LIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFI 336
           L +       +   L   +++ SDR+L+ M +  T  +  ++    R     I + +  +
Sbjct: 442 LARLLAASGCIA--LTAGLEAASDRLLERMKKGITVDQTARVAAAFRQA--GILVHAYLM 497

Query: 337 VGFPGETDDDFRATMDLVDKI 357
            G PGET  D   +++ V ++
Sbjct: 498 YGCPGETIADTVDSLERVRQL 518


>gi|158520382|ref|YP_001528252.1| radical SAM domain-containing protein [Desulfococcus oleovorans
           Hxd3]
 gi|158509208|gb|ABW66175.1| Radical SAM domain protein [Desulfococcus oleovorans Hxd3]
          Length = 289

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 36/232 (15%), Positives = 79/232 (34%), Gaps = 26/232 (11%)

Query: 185 GCDKF-CTFCV-VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQN-VNAWRGKGLD 241
           GC    CTFC      R    S     ++    +             Q+ +    G  L 
Sbjct: 24  GCSHNKCTFCAAYKGERFKIKS---DDIIMSDIEFAARHCRN-----QDRLFICDGDALI 75

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLD-VLMPYLHLPVQSGSD 300
             +     +L  + +    V      ++ + ++    +   +L    +   ++ ++SG D
Sbjct: 76  IPQKRLLAILKEIEQKLPWVNRVGVYANTKGIAMKTSEELAELRAHGLKIAYMGLESGDD 135

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPG-ETDDDF-RATMDLVDKIG 358
             LK++N+   + +   +  +IR+    +A+S   ++G  G E  +   + T +++  I 
Sbjct: 136 ETLKAVNKGADSQKMIDMGKKIRAA--GVALSITVLLGLAGRERSEIHAQKTGEVLSAID 193

Query: 359 YAQAFSFKYSPRLGTP------GSNMLEQVDENVKAERLLCLQKKLREQQVS 404
                +       GTP               E      L+ L+  +    +S
Sbjct: 194 PEYVGALSLMLIPGTPLYDEYAAGRFPILTPEET----LVELRTMITHTNLS 241


>gi|37525258|ref|NP_928602.1| lipoyl synthase [Photorhabdus luminescens subsp. laumondii TTO1]
 gi|47117161|sp|Q7N767|LIPA_PHOLL RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|36784685|emb|CAE13585.1| lipoic acid synthase (LIP-SYN) (lipoate synthase) [Photorhabdus
           luminescens subsp. laumondii TTO1]
          Length = 321

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 31/183 (16%), Positives = 69/183 (37%), Gaps = 12/183 (6%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V    G  ++   ++ V  A+ + D  +  + +   +    R    DG   
Sbjct: 94  CTRRCPFCDV--AHGRPMAPDTNEPVKLAQTIKDMALRYVVITSVD----RDDLRDGGAQ 147

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAH-GDLDVLMPYLHLPVQSGSDRILK 304
            F+D + ++ E    +++       R   D  ++        +  +    V     R+ +
Sbjct: 148 HFADCISAIREKNPSIKIETLVPDFRGRMDRALEILTATPPDVFNHNLENV----PRVYR 203

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
            +          +++++ +   PDI   S  +VG  GET+++    M  + + G      
Sbjct: 204 QVRPGANYEWSLKLLEKFKEAHPDIPTKSGLMVGL-GETNEEILDVMRDLRRHGVTMLTL 262

Query: 365 FKY 367
            +Y
Sbjct: 263 GQY 265


>gi|260654645|ref|ZP_05860135.1| putative coproporphyrinogen dehydrogenase [Jonquetella anthropi
           E3_33 E1]
 gi|260630661|gb|EEX48855.1| putative coproporphyrinogen dehydrogenase [Jonquetella anthropi
           E3_33 E1]
          Length = 381

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 42/190 (22%), Positives = 74/190 (38%), Gaps = 11/190 (5%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLG--QNVNAWRGKGLDGE 243
           C   C +C   +      +R+L + +    + +  G+      G  Q V    G      
Sbjct: 25  CRGKCPYC--SFYSRPLTARALDEYLTGVEREL--GILASRYSGKLQTVYIGGGTPSALP 80

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRD-MSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
              +  L  +L  +K      +T     + ++D LI    D    +  + L VQS  DRI
Sbjct: 81  IDAWRRLFAALEWLKRESSAEFTAEANPESLTDELIGLWQDHG--VNRVSLGVQSLDDRI 138

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           L  ++R H+A +  +   +   VR    +S D + G PG+T  +F  T+  +   G    
Sbjct: 139 LSGLSRHHSAVQALERTAQC--VRLGFRVSCDVMFGLPGQTLRNFAETVKRLVSTGVRHL 196

Query: 363 FSFKYSPRLG 372
             ++ S   G
Sbjct: 197 SLYQLSIEPG 206


>gi|302526115|ref|ZP_07278457.1| predicted protein [Streptomyces sp. AA4]
 gi|302435010|gb|EFL06826.1| predicted protein [Streptomyces sp. AA4]
          Length = 553

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 44/239 (18%), Positives = 80/239 (33%), Gaps = 24/239 (10%)

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG-IEISRS 206
           R+V+       +      VD     +RG    +  + GC   CT CV P  +G     R+
Sbjct: 179 RMVNVVTPYTRRSGVPHKVDNLEYYRRGGLGNILTRNGCPFACTHCVEPDAKGTRFALRA 238

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS--LSEIKGLVRLR 264
            S V DE   L++ GV ++       N      +   K    +++     S    L  LR
Sbjct: 239 PSAVADEMESLVEQGVHDLHTTDSEFNLN----ISHSKKVLREIIRRKQASARSPLHELR 294

Query: 265 -YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK------SMNRRHTAYEYRQ 317
            +    P        +   +       +++      D +L          R + A +  +
Sbjct: 295 LWIYVQPAPFDREYAELLAEAG--CAGINVAPDHVRDEVLDGWKVTGKGRRFYGAEDVGR 352

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS------FKYSPR 370
           +      +   +    + ++G PGET++  R  +     +G            F YSP 
Sbjct: 353 VCGWAHGL--GMLTMVEVLLGMPGETEETVRECVRTTLDLGATVVGYTLGIRVFPYSPL 409


>gi|224584968|ref|YP_002638767.1| hypothetical protein SPC_3241 [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|224469496|gb|ACN47326.1| hypothetical protein SPC_3241 [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
          Length = 723

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 52/297 (17%), Positives = 100/297 (33%), Gaps = 58/297 (19%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDN--GVCEIT--LLGQNVNA 234
           + I  GC   C+FC +    G  I SRS   +++E   + D   G   +   L G   N 
Sbjct: 380 INIMRGCFGGCSFCSITEHEGRIIQSRSEDSIINEIEAIRDTVPGFTGVISDLGGPTANM 439

Query: 235 WR----------------------GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
           +                          +D +     +L     E+KG+ ++   +    D
Sbjct: 440 YMLRCKSPRAEQTCRRLSCVYPDICPHMDTDHTPTINLYRRARELKGIKKILIASGVRYD 499

Query: 273 MSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRRH--TAYEYRQIIDRI-RSVRP 327
           ++    +   +L    +  YL +  +   +  L  M +    +   ++++ D   +    
Sbjct: 500 IAVEDPRYIKELASHHVGGYLKIAPEHTEEGPLSKMMKPGMGSYDRFKELFDLYSKQAGK 559

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGY--AQAFSFKYSPR-----LGTPGSNMLE 380
           +  +   FI   PG  D+D       + +  +   Q  +F  SP      +   G N L 
Sbjct: 560 EQYLIPYFISAHPGTRDEDMVNLALWLKRHRFRLDQVQNFYPSPLANSTTMYYTGKNPLG 619

Query: 381 QV---DENV---KAERLLCLQKKL-------------REQQVSFNDACVGQIIEVLI 418
           ++    E+V   K +R   L K L             +  +       +G   E L+
Sbjct: 620 KIGYKSEDVVVPKGDRQRRLHKALLRYHDPANWPLIRQALEAMGKKHLIGGRRECLV 676


>gi|237807216|ref|YP_002891656.1| coproporphyrinogen III oxidase [Tolumonas auensis DSM 9187]
 gi|237499477|gb|ACQ92070.1| oxygen-independent coproporphyrinogen III oxidase [Tolumonas
           auensis DSM 9187]
          Length = 457

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 40/257 (15%), Positives = 82/257 (31%), Gaps = 33/257 (12%)

Query: 158 DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS-------QV 210
           D  + L        R   +   +     C K C +C        +  ++         ++
Sbjct: 37  DYPQFLRAAQQYPQRPLSLYVHIPF---CHKLCYYCACNKIVTRQRHKAEEYLGYLEKEI 93

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270
             +A+      V ++   G        + +               E  G   +      P
Sbjct: 94  RQQAKLFAGRAVTQLHWGGGTPTYLSHEQIARLMTMLKTNFNFAEE--GEFSIE---IDP 148

Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330
           R+++   +            + L VQ    R+ + +NR       R +I   + +     
Sbjct: 149 REITLDTLDVLKQAG--FNRISLGVQDFDKRVQEVVNREQDNDFIRAMIRHAKEL--GFR 204

Query: 331 ISS-DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK-- 387
            ++ D I G P +T + FR T++ + ++   +   F Y+       S    Q    +K  
Sbjct: 205 STNLDLIYGLPLQTRESFRHTLEQIAELQPDRLSVFNYAHLP----SRFAGQ--HKIKEE 258

Query: 388 -----AERLLCLQKKLR 399
                AE+L  LQ+ + 
Sbjct: 259 LLPSPAEKLAMLQETIE 275


>gi|206889447|ref|YP_002249125.1| radical SAM domain protein [Thermodesulfovibrio yellowstonii DSM
           11347]
 gi|206741385|gb|ACI20442.1| radical SAM domain protein [Thermodesulfovibrio yellowstonii DSM
           11347]
          Length = 547

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 35/200 (17%), Positives = 79/200 (39%), Gaps = 27/200 (13%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
           +    GC   C FC+V +        ++  +  +  +L      +  L+  ++ A++   
Sbjct: 252 VETMRGCPFSCRFCLVGHVYKPVRKANIEDLKSKIEELKP---FQAGLIAPSITAYK--- 305

Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
                      L  L +I   V L +T+      +  ++K       L   + L  ++G+
Sbjct: 306 ----------ELKELLKI-SDVELSFTSLRADKSTIEILKTLA----LRKTVTLAPEAGT 350

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG- 358
           DR+ + + +  +  +   I   +     +I +   F++G P E D++    ++L+ KI  
Sbjct: 351 DRLRRIIKKEISENDLLLIAQELNETELEI-LKLYFMIGLPFEKDEEIDEIVNLIKKIRS 409

Query: 359 -YAQ---AFSFKYSPRLGTP 374
            + +   A    + P+  TP
Sbjct: 410 VFQRKITASVSIFVPKPFTP 429


>gi|187933884|ref|YP_001885439.1| oxygen-independent coproporphyrinogen III oxidase [Clostridium
           botulinum B str. Eklund 17B]
 gi|187722037|gb|ACD23258.1| oxygen-independent coproporphyrinogen III oxidase [Clostridium
           botulinum B str. Eklund 17B]
          Length = 340

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 37/205 (18%), Positives = 69/205 (33%), Gaps = 4/205 (1%)

Query: 176 VTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW 235
           +      QEGC   C FC      G++   +   V       ++    +  ++  +    
Sbjct: 7   IIPIFVPQEGCPHKCVFCNQDRITGLKDIVTTDIVRKTIDDYLETITNKEAIIEVSFFGG 66

Query: 236 RGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPV 295
               +  EK      +    + KGL+     ++ P  + D ++    +    +  + L V
Sbjct: 67  TFTAVKEEKQRAFLEIAKGYKDKGLIDKIRLSTRPDAIDDYILTYLKEYK--VDIIELGV 124

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
           QS  D ILK   R H   +  +    I+       +    + G PG+T +    T  L  
Sbjct: 125 QSLDDEILKKSGRGHYVSDVEKASALIKQY--GFVLGHQIMPGLPGDTSEKDILTTKLSI 182

Query: 356 KIGYAQAFSFKYSPRLGTPGSNMLE 380
           K+       +       TP   M +
Sbjct: 183 KMKPDICRIYPALVIKDTPMEKMYK 207


>gi|167746739|ref|ZP_02418866.1| hypothetical protein ANACAC_01451 [Anaerostipes caccae DSM 14662]
 gi|167653699|gb|EDR97828.1| hypothetical protein ANACAC_01451 [Anaerostipes caccae DSM 14662]
          Length = 570

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 43/294 (14%), Positives = 96/294 (32%), Gaps = 25/294 (8%)

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           +  +  +     K    L + + G     + E++L   P V  ++  +      ELL+  
Sbjct: 68  IEYVERILREIKKLFPSLPIWLGGPEVSYDAEQVLLTFPEVTGIMRGEGEETFLELLDHY 127

Query: 144 ---------------RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
                          R   ++ +  +        +  V       +    +     GC  
Sbjct: 128 HGKTEDLSQIQGITYRHRDQITENPWRPVMDLSMVPFVYHHLEDFQNKIIYYESSRGCPF 187

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS 248
            C++C+          R LS V +E +  +++ V ++  + +  N               
Sbjct: 188 SCSYCL-SSIDKCLRFRDLSLVTEELQFFLNHRVPQVKFVDRTFNCNHRHAAAIWNYIKD 246

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
                     G+    +  +    +S+  +     +   +  L + VQS + + +  + R
Sbjct: 247 HD-------NGITNFHFEVAADL-LSEEELDLISGMRPGLIQLEIGVQSTNPKTISEICR 298

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           +    +   I +RI +   +I    D I G P E    FR + + V ++   Q 
Sbjct: 299 KMDFAKVSAIAERI-NHGQNIHQHLDLIAGLPFEDLKSFRDSFNDVYRVRPEQL 351


>gi|301154773|emb|CBW14236.1| lipoate synthase [Haemophilus parainfluenzae T3T1]
          Length = 320

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 31/214 (14%), Positives = 69/214 (32%), Gaps = 10/214 (4%)

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           + +    E  S  +       G   F+ +   C + C FC V    G  +     +    
Sbjct: 61  HGLHSVCEEASCPNLHECFNHGTATFMILGAICTRRCPFCDV--AHGKPLPPDPDEPRKL 118

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
           A  + D  +  + +   +    R    D     F++ +  +  +   +++       R  
Sbjct: 119 AETIQDMKLKYVVITSVD----RDDLPDRGAGHFAECVKEVRALNPGIKIEILVPDFRGR 174

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
               ++   D     P +         R+ K +          +++   + + P+I   S
Sbjct: 175 ITQALEKLKDNP---PDVFNHNLENVPRLYKEIRPGADYQWSLKLLHDFKEMFPNIPTKS 231

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
             +VG  GET+++    M  +   G       +Y
Sbjct: 232 GLMVGL-GETNEEILQVMADLRANGVTMLTLGQY 264


>gi|254479248|ref|ZP_05092592.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Carboxydibrachium pacificum DSM 12653]
 gi|214034817|gb|EEB75547.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Carboxydibrachium pacificum DSM 12653]
          Length = 375

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 32/213 (15%), Positives = 72/213 (33%), Gaps = 24/213 (11%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C K C +C      G E             + +   + EI    +         + G   
Sbjct: 13  CKKKCYYCDFNSYVGYE---------HLMEEYVKALIEEIKYYSEEDLKIVSVYIGGGTP 63

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY-------LHLPVQSG 298
            F      +  +   +   Y      +++  +       D L  Y       + + +Q+ 
Sbjct: 64  NF-LPPSYIEMVLSEIHRHYNVLGDAEITIEVNPGLLTEDKLKIYKVNGINRISIGLQAF 122

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
            +R+L+ + R HT  ++ +    IR    ++ +  D I   P +T ++++ T+  V ++ 
Sbjct: 123 QNRLLEYIGRIHTVEDFLENYALIRKYFDNVNV--DLIYALPTQTFEEWQETLIKVVELK 180

Query: 359 YAQAFSFKYSPRLGTPGSNMLEQ-----VDENV 386
                ++       TP   +  +     +DE  
Sbjct: 181 PEHISTYSLILEENTPFGRLYREGKLPVIDEEE 213


>gi|84393235|ref|ZP_00991997.1| hypothetical protein V12B01_08547 [Vibrio splendidus 12B01]
 gi|84376141|gb|EAP93027.1| hypothetical protein V12B01_08547 [Vibrio splendidus 12B01]
          Length = 317

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 2/88 (2%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +L L +Q+ +D+ LK +NR H    Y  I  R R++   I I +  IVG P ET  D   
Sbjct: 143 WLELGLQTANDKTLKRINRGHDFAVYETITRRARAL--GIKICTHLIVGLPKETKADNLE 200

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
           T+D V  +G             G+  + 
Sbjct: 201 TLDKVLAVGTDGIKLHGLHIVEGSTMAK 228


>gi|115402543|ref|XP_001217348.1| lipoic acid synthetase, mitochondrial precursor [Aspergillus
           terreus NIH2624]
 gi|114189194|gb|EAU30894.1| lipoic acid synthetase, mitochondrial precursor [Aspergillus
           terreus NIH2624]
          Length = 316

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 41/260 (15%), Positives = 91/260 (35%), Gaps = 20/260 (7%)

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQ-EGCDKFCTFCVVPYTR 199
           +R +   R ++     E+          G + K   TA + +  + C + C FC V  +R
Sbjct: 19  QRLKRDLRGLNLHTVCEEARCPNISDCWGGSDKSHATATIMLMGDTCTRGCRFCSVKTSR 78

Query: 200 GIEISRS----LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
                R       +  + A  +   G+  + L   +    R    DG    F++ +  + 
Sbjct: 79  -----RPPPLDPHEPENTAEAISRWGLGYVVLTSVD----RDDLADGGARHFAETVMKIK 129

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
                + +   T      +D +         +  +    V++ +  +     RR T  + 
Sbjct: 130 SKAPSILVECLTGDYAGDTDMVALVARSGLDVYAHNVETVEALTPFVRD---RRATFQQS 186

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
            +++   ++ RPD+   +  ++G  GE+D+     +  +  +        +Y  R     
Sbjct: 187 IRVLQAAKAARPDLITKTSLMLGL-GESDEQIEDALRQLRAVNVDVVTFGQYM-RPTKRH 244

Query: 376 SNMLEQV-DENVKAERLLCL 394
             + E V  +  +  RL  L
Sbjct: 245 MAVHEYVTPDKFEHWRLRAL 264


>gi|310287389|ref|YP_003938647.1| oxygen-independent coproporphyrinogen III oxidase [Bifidobacterium
           bifidum S17]
 gi|309251325|gb|ADO53073.1| oxygen-independent coproporphyrinogen III oxidase [Bifidobacterium
           bifidum S17]
          Length = 464

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 44/241 (18%), Positives = 84/241 (34%), Gaps = 27/241 (11%)

Query: 186 CDKFCTFC------VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
           C + C +C            G       + VV E R + D  +      G          
Sbjct: 48  CMRRCGYCDFNTYTATDMGAGASRGNYANMVVREMRLVRDWQLVH----GIEEPPVSTVF 103

Query: 240 LDGEKCTF---SDLLYSLSEIKGLVRL-----RYTTSHPRDMSDCLIKAHGDLDVLMPYL 291
             G   T     DL+  L  ++GL  +       T ++P  + +  I A  +       +
Sbjct: 104 FGGGTPTILPARDLVMMLDAVRGLWGIEPEAEITTEANPDTVDERYIGALAEGG--FTRV 161

Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351
              +QS    +LK+++R HT       +    + R  +  S D I G PGE+ DD+R ++
Sbjct: 162 SFGMQSAVPHVLKTLDRTHTPANVEAGVRA--ADRAGLRSSVDLIYGAPGESLDDWRDSV 219

Query: 352 DLVDKIGYAQAFSFKYSPRLGTP-----GSNMLEQVDENVKAERLLCLQKKLREQQVSFN 406
                +G     ++  +    T       +  L + D++ +A +            + + 
Sbjct: 220 RTAVDLGVNHVSAYALTVEPTTKMGRQIAAGTLPKPDDDDEAAKYEIADDLFAAAGLEWY 279

Query: 407 D 407
           +
Sbjct: 280 E 280


>gi|91788855|ref|YP_549807.1| radical SAM family protein [Polaromonas sp. JS666]
 gi|91698080|gb|ABE44909.1| Radical SAM [Polaromonas sp. JS666]
          Length = 831

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 47/264 (17%), Positives = 83/264 (31%), Gaps = 45/264 (17%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLID--NGVCEIT--LLGQNVNA 234
           + I  GC   CTFC +    G  I SRS   V+ E   + D   G       L G   N 
Sbjct: 474 VNIMRGCFGGCTFCSITEHEGRIIQSRSEDSVIREIEAIRDTVKGFTGAISDLGGPTANM 533

Query: 235 WR----------------------GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
           +R                         L+        +      +KG+ ++  ++    D
Sbjct: 534 YRIGCKSPEIEAACRKPSCVYPGICSNLNTNHNPLIKMYRRARALKGVKKILISSGLRYD 593

Query: 273 MSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRR--HTAYEYRQIIDRIR-SVRP 327
           ++    +   +L    +  YL +  +      L  M +    +  +++Q+ ++       
Sbjct: 594 LAVQSPEYVKELVTHHVGGYLKIAPEHTEQGPLTKMMKPGIGSYDKFKQMFEKYSLEAGK 653

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGY--AQAFSFKYSPRLGTPGSNMLEQVDEN 385
              +   FI   PG +D+D       + K G+   Q  +F  SP           +    
Sbjct: 654 KQFLIPYFIAAHPGTSDEDMMNLAIWLKKNGFRADQVQTFYPSPMATATAMYHTNKNPLR 713

Query: 386 -----------VKAERLLCLQKKL 398
                      V+ ER   L K  
Sbjct: 714 KITRDSETVDIVRGERRRRLHKAF 737


>gi|293449361|ref|ZP_06663782.1| ygiQ protein [Escherichia coli B088]
 gi|291322451|gb|EFE61880.1| ygiQ protein [Escherichia coli B088]
          Length = 708

 Score = 57.6 bits (138), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 48/297 (16%), Positives = 98/297 (32%), Gaps = 58/297 (19%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDN--GVCEIT--LLGQNVNA 234
           + I  GC   C+FC +    G  I SRS   +++E   + D   G   +   L G   N 
Sbjct: 349 VNIMRGCFGGCSFCSITEHEGRIIQSRSEDSIINEIEAIRDTVPGFTGVISDLGGPTANM 408

Query: 235 WR----------------------GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
           +                          +D       +L     ++KG+ ++   +    D
Sbjct: 409 YMLRCKSPRAEQTCRRLSCVYPDICPHMDTNHEPTINLYRRARDLKGIKKILIASGVRYD 468

Query: 273 MSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRRH--TAYEYRQIIDRI-RSVRP 327
           ++    +   +L    +  YL +  +   +  L  M +    +   ++++ D   +    
Sbjct: 469 IAVEDPRYIKELATHHVGGYLKIAPEHTEEGPLSKMMKPGMGSYDRFKELFDTYSKQAGK 528

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGY--AQAFSFKYSPRLGT---------PGS 376
           +  +   FI   PG  D+D       + K  +   Q  +F  SP   +         P +
Sbjct: 529 EQYLIPYFISAHPGTRDEDMVNLALWLKKHRFRLDQVQNFYPSPLANSTTMYYTGKNPLA 588

Query: 377 NMLEQ-----VDENVKAERL-LCLQK--------KLREQQVSF-NDACVGQIIEVLI 418
            +  +     V +  K  RL   L +         +R+   +      +G   + L+
Sbjct: 589 KIGYKSEDVFVPKGDKQRRLHKALLRYHDPANWPLIRQALEAMGKKHLIGSRRDCLV 645


>gi|54023654|ref|YP_117896.1| lipoyl synthase [Nocardia farcinica IFM 10152]
 gi|81602900|sp|Q5YZ59|LIPA_NOCFA RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|54015162|dbj|BAD56532.1| putative lipoic acid synthetase [Nocardia farcinica IFM 10152]
          Length = 352

 Score = 57.6 bits (138), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 43/252 (17%), Positives = 83/252 (32%), Gaps = 29/252 (11%)

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQ-EGCDKFCTFCVVPYTRGIEISRSLSQVVD 212
           ++V ++    +I +   +R+    A   I  E C + C FC +    G   +    +   
Sbjct: 68  HTVCEEAGCPNIFECWEDRE----ATFLIGGEQCTRRCDFCQI--DTGKPAALDRDEPRR 121

Query: 213 EARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
            A  +   G+   T+ G      R    DG    +++ + ++  +     +         
Sbjct: 122 VAESVQAMGLRYSTITGV----ARDDLEDGGAWLYAETVRAIKRLNPATGVELLIPDFNA 177

Query: 273 MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAIS 332
             D L +       ++ +    V     RI K +           ++   R     +   
Sbjct: 178 DPDQLAEVFSARPEVLAHNLETV----PRIFKRIRPAFRYERSLSVLTAAREA--GLVTK 231

Query: 333 SDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY---SPRLGTPGSNMLEQVDENVKAE 389
           S+ I+G  GET ++    M  + + G       +Y   SPR           VD  VK E
Sbjct: 232 SNLILGM-GETPEEVTEAMRDLHEAGCDILTITQYLRPSPRHH--------PVDRWVKPE 282

Query: 390 RLLCLQKKLREQ 401
             +   +   E 
Sbjct: 283 EFVEHSRVAEEI 294


>gi|160901737|ref|YP_001567318.1| radical SAM domain-containing protein [Petrotoga mobilis SJ95]
 gi|160359381|gb|ABX30995.1| Radical SAM domain protein [Petrotoga mobilis SJ95]
          Length = 493

 Score = 57.6 bits (138), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 47/316 (14%), Positives = 102/316 (32%), Gaps = 34/316 (10%)

Query: 57  NSMDDADLIVLNTCHI-REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGE 115
             + ++D + ++   + RE A          I  +K           +V  G +   E +
Sbjct: 61  EDILNSDYVFISAMAVQRESA----------INVIKQCNEFGKP---IVAGGPLFTMEPD 107

Query: 116 EILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGY-NRKR 174
                   V+  V  +    + EL+E  +  K             E   +      N K 
Sbjct: 108 TFQNT---VDHFVLGEAEELMDELVEDIKNNKLKRYYAKPNFCNIEATPVPRWDLLNLKW 164

Query: 175 GVTAFLTIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVCEITLLGQNVN 233
             +  +    GC   C FC +    G +  +++  Q++ E + L D           +  
Sbjct: 165 YGSMSIQYSRGCPYNCEFCDIAALNGRKPRTKTSKQLIQELQSLYDAWWRRSVFFVDD-- 222

Query: 234 AWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT--TSHPRDMSDC--LIKAHGDLDVLMP 289
                 +  +     D+L ++ + +      ++  T    D S+   L+           
Sbjct: 223 ----NFISNKSKLKKDVLPAIIQWQKAHGYPFSFYTEVSIDFSNDDQLMDLM--FKAGFD 276

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR-PDIAISSDFIVGFPGETDDDFR 348
            + + +++     L+  N+     +  +  + I+ ++     I   FIVGF  +    F 
Sbjct: 277 RVFIGLETPDPDSLREANKYQNIKQNLE--ESIKKIQSFGFEIQGGFIVGFDSDKPTIFD 334

Query: 349 ATMDLVDKIGYAQAFS 364
              + + K G   A  
Sbjct: 335 KQFEFIQKNGIVTAMV 350


>gi|186680582|ref|YP_001863778.1| radical SAM domain-containing protein [Nostoc punctiforme PCC
           73102]
 gi|186463034|gb|ACC78835.1| Radical SAM domain protein [Nostoc punctiforme PCC 73102]
          Length = 528

 Score = 57.6 bits (138), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 58/328 (17%), Positives = 111/328 (33%), Gaps = 33/328 (10%)

Query: 62  ADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRS 121
           ADL++++   ++++        L +I   K    +      V V G    A  +E+    
Sbjct: 66  ADLVIMSAMIVQKE------DLLCQILEAKRRGKR------VAVGGPFPTALPDEMTSA- 112

Query: 122 PIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTA--F 179
             V+ ++  +    LP  +     G R        E      +        +    A   
Sbjct: 113 -GVDYLILDEGEITLPLFVAAIARGDRTGIFRSGGEKPDVTNTPTPRFDLLEFEAYAEMS 171

Query: 180 LTIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK 238
           +    GC   C FC +    G +  +++  Q++ E   L   G      +  +       
Sbjct: 172 VQFSRGCPFQCEFCDIIVLYGRKPRTKNPEQLLAELDYLYKLGWRRSIFMVDD------- 224

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLI--KAHGDLDVLMPY--LHLP 294
              G K      L SL  +  +V   Y  S   + S  L   +   DL V   +  + L 
Sbjct: 225 NFIGNKRNVKLFLKSL--LPWMVEHNYPFSFATEASVDLAQDQELMDLMVACNFGAVFLG 282

Query: 295 VQSGSDRILKSMNR-RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
           +++  +  L    + ++T       ++RI   R  + + + FI+GF GE        +  
Sbjct: 283 IETPDEESLTFTQKYQNTRDSLSDAVNRIT--RSGLRVMAGFIIGFDGEKVGAGARIVKF 340

Query: 354 VDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           V++     A          T   + LE+
Sbjct: 341 VEQTAIPTALFSMLQALPDTALWHRLEK 368


>gi|323957836|gb|EGB53550.1| radical SAM domain-containing protein [Escherichia coli H263]
          Length = 689

 Score = 57.6 bits (138), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 48/297 (16%), Positives = 98/297 (32%), Gaps = 58/297 (19%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDN--GVCEIT--LLGQNVNA 234
           + I  GC   C+FC +    G  I SRS   +++E   + D   G   +   L G   N 
Sbjct: 380 VNIMRGCFGGCSFCSITEHEGRIIQSRSEDSIINEIEAIRDTVPGFTGVISDLGGPTANM 439

Query: 235 WR----------------------GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
           +                          +D       +L     ++KG+ ++   +    D
Sbjct: 440 YMLRCKSPRAEQTCRRLSCVYPDICPHMDTNHEPTINLYRRARDLKGIKKILIASGVRYD 499

Query: 273 MSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRRH--TAYEYRQIIDRI-RSVRP 327
           ++    +   +L    +  YL +  +   +  L  M +    +   ++++ D   +    
Sbjct: 500 IAVEDPRYIKELATHHVGGYLKIAPEHTEEGPLSKMMKPGMGSYDRFKELFDTYSKQAGK 559

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGY--AQAFSFKYSPRLGT---------PGS 376
           +  +   FI   PG  D+D       + K  +   Q  +F  SP   +         P +
Sbjct: 560 EQYLIPYFISAHPGTRDEDMVNLALWLKKHRFRLDQVQNFYPSPLANSTTMYYTGKNPLA 619

Query: 377 NMLEQ-----VDENVKAERL-LCLQK--------KLREQQVSF-NDACVGQIIEVLI 418
            +  +     V +  K  RL   L +         +R+   +      +G   + L+
Sbjct: 620 KIGYKSEDVFVPKGDKQRRLHKALLRYHDPANWPLIRQALEAMGKKHLIGSRRDCLV 676


>gi|302528865|ref|ZP_07281207.1| coproporphyrinogen III oxidase [Streptomyces sp. AA4]
 gi|302437760|gb|EFL09576.1| coproporphyrinogen III oxidase [Streptomyces sp. AA4]
          Length = 423

 Score = 57.6 bits (138), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 50/246 (20%), Positives = 83/246 (33%), Gaps = 18/246 (7%)

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV-PYTRG 200
           RAR G+  V            L          R    ++ +   C   C +C    YT G
Sbjct: 13  RARRGRMDVVPVPDTHRPPAGLPETALAGLGTRPFGVYVHVPF-CATRCGYCDFNTYTAG 71

Query: 201 IEISR-SLSQVVDEARKLIDNGVCEI--------TLLGQNVNAWRGKGLDGEKCTFSDLL 251
              S  S    +D  R+ ++ G   +          +G    +  G          +++L
Sbjct: 72  ELGSAASPRSWLDALRRELELGAEILGSAPPAETVFVGGGTPSLLGAD------GLAEVL 125

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
             +    GL      T+     S       G  D     + L +QS +  +LK ++R HT
Sbjct: 126 DGVRSAFGLAPGAEVTTESNPESTSPEFFAGIRDAGYTRVSLGMQSAARHVLKVLDRVHT 185

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
                      R+   +  ++ D I G PGE  +D RA++D V   G     ++      
Sbjct: 186 PGRPVDAAREARAAGFE-HVNLDLIYGTPGERVEDLRASLDAVLSAGVDHVSAYALIVED 244

Query: 372 GTPGSN 377
           GT  + 
Sbjct: 245 GTALAR 250


>gi|171057092|ref|YP_001789441.1| lipoyl synthase [Leptothrix cholodnii SP-6]
 gi|238689082|sp|B1XX30|LIPA_LEPCP RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|170774537|gb|ACB32676.1| lipoic acid synthetase [Leptothrix cholodnii SP-6]
          Length = 331

 Score = 57.6 bits (138), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 34/216 (15%), Positives = 72/216 (33%), Gaps = 12/216 (5%)

Query: 153 DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVD 212
           ++ +    E  S  + G    +G   F+ + + C + C FC V + R   +   +++  +
Sbjct: 67  EHQLHTVCEEASCPNIGECFGKGTATFMIMGDKCTRRCPFCDVGHGRPDPL--DVNEPAN 124

Query: 213 EARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
            A+ +    +  + +   +    R    DG    + + +          R+       R 
Sbjct: 125 LAKTIAALKLKYVVITSVD----RDDLRDGGAGHYVECIRQTRAASPETRIEVLVPDFRG 180

Query: 273 MSDCLIKAHGDLDV-LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAI 331
             D  ++        +M +    V     R+ K             ++ R +   P +  
Sbjct: 181 RMDRALEILKTAPPDVMNHNMETV----PRLYKEARPGADYQFSLTLLKRFKEEVPGVPT 236

Query: 332 SSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
            S  +VG  GETDD+    M  +           +Y
Sbjct: 237 KSGLMVGL-GETDDEILDVMRDMRAHDIDMLTIGQY 271


>gi|167771532|ref|ZP_02443585.1| hypothetical protein ANACOL_02902 [Anaerotruncus colihominis DSM
           17241]
 gi|167666172|gb|EDS10302.1| hypothetical protein ANACOL_02902 [Anaerotruncus colihominis DSM
           17241]
          Length = 484

 Score = 57.6 bits (138), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 36/188 (19%), Positives = 65/188 (34%), Gaps = 11/188 (5%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITL---LGQNVNAWRGKGLDG 242
           C   C +C         + R  + +     +L +       L   LG  +      G   
Sbjct: 170 CPTRCAYC---SFVSQSVERDAALIPAYVDRLCEELEYTGCLAKELGLRLRTVYFGGGTP 226

Query: 243 EKCTFSDLLYSLSEIKGLVRL----RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
              +  DL   +  +     L     YT    R  +    K           + +  Q+ 
Sbjct: 227 TTLSAEDLTRVMGTVADRFDLSGLWEYTVEAGRPDTVTPQKLRAIYAGGARRVSINPQTL 286

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           SD +L ++ RRHT+ ++ +     R+   D  I++D I G P +T + F A++D V  + 
Sbjct: 287 SDTVLCAIGRRHTSAQFFEAFAMARAAGFD-CINTDLIAGLPADTPEGFAASVDGVLALH 345

Query: 359 YAQAFSFK 366
                   
Sbjct: 346 PENVTVHT 353


>gi|167758648|ref|ZP_02430775.1| hypothetical protein CLOSCI_00988 [Clostridium scindens ATCC 35704]
 gi|167663844|gb|EDS07974.1| hypothetical protein CLOSCI_00988 [Clostridium scindens ATCC 35704]
          Length = 588

 Score = 57.6 bits (138), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 36/215 (16%), Positives = 70/215 (32%), Gaps = 10/215 (4%)

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
           R+V+  +       ++  V            +     GC   C++C+          R  
Sbjct: 160 RIVENPWRQAMDLSKIPFVYRHLEEFEHKIVYYESSRGCPFSCSYCL-SSVDKRLRFRDA 218

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
             V  E +  ID GV ++  + +  N      +   K              G+    +  
Sbjct: 219 GLVERELQFFIDQGVPQVKFVDRTFNCRHDHAIRIWKYIAKHDR-------GITNFHFEI 271

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
           +      + L         L+  L + +QS +   ++++ R       + ++DRI+    
Sbjct: 272 AADLLNEEELEILEHMRPGLV-QLEIGIQSTNPETIRAIRRTMNFENVKCVVDRIQKN-G 329

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           +I    D I G P E    F  + D V  +   Q 
Sbjct: 330 NIHQHLDLIAGLPYEDIHRFARSFDEVYALKPEQL 364


>gi|163797540|ref|ZP_02191490.1| magnesium-protoporphyrin IX monomethyl ester oxidative cyclase
           [alpha proteobacterium BAL199]
 gi|159177139|gb|EDP61699.1| magnesium-protoporphyrin IX monomethyl ester oxidative cyclase
           [alpha proteobacterium BAL199]
          Length = 657

 Score = 57.6 bits (138), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 55/290 (18%), Positives = 98/290 (33%), Gaps = 39/290 (13%)

Query: 90  LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER-ARFGKR 148
           L  +  +     +VV+ G   +   + +    P V+ +V  +       +L   A  G+ 
Sbjct: 83  LAAAVKRRSPQTIVVIGGPHPKYGDDSVFVAHPAVDALVQGEGEAVFLGVLRAIAATGRL 142

Query: 149 VVDTDYSVEDKFE-------------RLSIVDGGYN-----------RKRGVTAFLTI-- 182
                 S  D  +              +S +   Y            R+RG +    +  
Sbjct: 143 APIDGLSFRDPDDGSIRISQHRAKAGDMSAIPSPYAAGLMDGPLADVRRRGYSVSTVLES 202

Query: 183 QEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG 242
             GC   CTFC             + +V  +   + DNG+  + +   NV   + +  D 
Sbjct: 203 NRGCPFQCTFCDWGSLGSKLAELPIERVFADIDWIADNGIETLWMADSNVGIRK-RDKDI 261

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV--LMPYLHLPVQSGSD 300
                           G  R     S  ++ S  +I A   L    +   L L  QS  +
Sbjct: 262 AAYLADACHR-----TGYPRTLV-MSTSKNSSRAVIDAMRPLTQTPMYRGLSLSFQSYDE 315

Query: 301 RILKSMNRRHTA-YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
             L+++ R++     Y ++ +   S        S+ I+G PGET D F+A
Sbjct: 316 TALRNIKRQNIKLSSYYELQEYTLSR--GERAYSEVILGLPGETLDSFKA 363


>gi|163797741|ref|ZP_02191688.1| magnesium-protoporphyrin IX monomethyl ester oxidative cyclase
           [alpha proteobacterium BAL199]
 gi|159176961|gb|EDP61525.1| magnesium-protoporphyrin IX monomethyl ester oxidative cyclase
           [alpha proteobacterium BAL199]
          Length = 657

 Score = 57.6 bits (138), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 55/290 (18%), Positives = 98/290 (33%), Gaps = 39/290 (13%)

Query: 90  LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER-ARFGKR 148
           L  +  +     +VV+ G   +   + +    P V+ +V  +       +L   A  G+ 
Sbjct: 83  LAAAVKRRSPQTIVVIGGPHPKYGDDSVFVAHPAVDALVQGEGEAVFLGVLRAIAATGRL 142

Query: 149 VVDTDYSVEDKFE-------------RLSIVDGGYN-----------RKRGVTAFLTI-- 182
                 S  D  +              +S +   Y            R+RG +    +  
Sbjct: 143 APIDGLSFRDPDDGSIRISQHRAKAGDMSAIPSPYAAGLMDGPLADVRRRGYSVSTVLES 202

Query: 183 QEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG 242
             GC   CTFC             + +V  +   + DNG+  + +   NV   + +  D 
Sbjct: 203 NRGCPFQCTFCDWGSLGSKLAELPIERVFADIDWIADNGIETLWMADSNVGIRK-RDKDI 261

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV--LMPYLHLPVQSGSD 300
                           G  R     S  ++ S  +I A   L    +   L L  QS  +
Sbjct: 262 AAYLADACHR-----TGYPRTLV-MSTSKNSSRAVIDAMRPLTQTPMYRGLSLSFQSYDE 315

Query: 301 RILKSMNRRHTA-YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
             L+++ R++     Y ++ +   S        S+ I+G PGET D F+A
Sbjct: 316 TALRNIKRQNIKLSSYYELQEYTLSR--GERAYSEVILGLPGETLDSFKA 363


>gi|152996853|ref|YP_001341688.1| lipoyl synthase [Marinomonas sp. MWYL1]
 gi|150837777|gb|ABR71753.1| lipoic acid synthetase [Marinomonas sp. MWYL1]
          Length = 319

 Score = 57.6 bits (138), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 35/240 (14%), Positives = 71/240 (29%), Gaps = 13/240 (5%)

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
           +    ++ +    E  +  + G     G   F+ + E C + C FC V + R   +S   
Sbjct: 54  KATLREHKLASVCEEANCPNLGECFSNGTATFMIMGEICTRRCPFCDVAHGRPNPLS--A 111

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
            +  + A  + D  +  + +   +    R    DG    F D +         + +    
Sbjct: 112 DEPKELAAAIRDMKLKYVVITSVD----RDDLRDGGAQHFVDCIRETRAESPNIEIETLV 167

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL-KSMNRRHTAYEYRQIIDRIRSVR 326
              R   +  I        + P         S   L + +           ++   +   
Sbjct: 168 PDFRGRMEVAIDTLS----IAPPDVFNHNLESIPRLYRQVRPGSDYQWSLDLLKNFKDRC 223

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           PD+   S  +VG  GET ++    +  +           +Y  +       M   V    
Sbjct: 224 PDVPTKSGLMVGM-GETFEEIVEVLKDLRAHNVDMLTIGQYL-QPSKHHFPMARFVPPEE 281


>gi|16761943|ref|NP_457560.1| hypothetical protein STY3342 [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|25513021|pir||AG0887 conserved hypothetical protein STY3342 [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16504245|emb|CAD02999.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhi]
          Length = 723

 Score = 57.6 bits (138), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 52/297 (17%), Positives = 100/297 (33%), Gaps = 58/297 (19%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDN--GVCEIT--LLGQNVNA 234
           + I  GC   C+FC +    G  I SRS   +++E   + D   G   +   L G   N 
Sbjct: 380 INIMRGCFGGCSFCSITEHEGRIIQSRSEDSIINEIEAIRDTVPGFTGVISDLGGPTANM 439

Query: 235 WR----------------------GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
           +                          +D +     +L     E+KG+ ++   +    D
Sbjct: 440 YMLRCKSPRAEQTCRRLSCVYPDICPHMDTDHTPTINLYRRARELKGIKKILIASGVRYD 499

Query: 273 MSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRRH--TAYEYRQIIDRI-RSVRP 327
           ++    +   +L    +  YL +  +   +  L  M +    +   ++++ D   +    
Sbjct: 500 IAVEDPRYIKELASHHVGGYLKIAPEHTEEGPLSKMMKPGMGSYDRFKELFDLYSKQAGK 559

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGY--AQAFSFKYSPR-----LGTPGSNMLE 380
           +  +   FI   PG  D+D       + +  +   Q  +F  SP      +   G N L 
Sbjct: 560 EQYLIPYFISAHPGTRDEDMVNLALWLKRHRFRLDQVQNFYPSPLANSTTMYYTGKNPLG 619

Query: 381 QV---DENV---KAERLLCLQKKL-------------REQQVSFNDACVGQIIEVLI 418
           ++    E+V   K +R   L K L             +  +       +G   E L+
Sbjct: 620 KIGYKSEDVVVPKGDRQRRLHKALLRYHDPANWPLIRQALEAMGKKHLIGGRRECLV 676


>gi|223940938|emb|CAQ43073.1| radical SAM methyltransferase [Chondromyces crocatus]
          Length = 700

 Score = 57.6 bits (138), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 40/211 (18%), Positives = 72/211 (34%), Gaps = 25/211 (11%)

Query: 153 DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI---SRSLSQ 209
           +  + D      +          V  ++  Q GC   C FC     +   +    R+   
Sbjct: 235 ELPIVDWSLSTRVEPPIDPIATPVATWVETQRGCVFSCEFCDYRTIQTPAVMTTDRAAEA 294

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV---RLRYT 266
           ++  A  +   G   IT         R +          ++L  L E  G          
Sbjct: 295 IL--AAGVSPRGSVRITDSTATFPHKRWE----------EVLQKLIERGGSKAPLWCFAR 342

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
            S   + S  L+K  G     + ++ +  +SG  R+L  M +     + R  +  +   +
Sbjct: 343 VSDINERSAELMKLAG-----VQHMFIGQESGDQRVLTEMKKGTNVKQVRPAVAAL--AK 395

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
             +  +  FI GFPGE D   +AT  L+  +
Sbjct: 396 HGLNATFAFIHGFPGEDDASIQATRTLIKTL 426


>gi|121603302|ref|YP_980631.1| radical SAM domain-containing protein [Polaromonas
           naphthalenivorans CJ2]
 gi|120592271|gb|ABM35710.1| Radical SAM domain protein [Polaromonas naphthalenivorans CJ2]
          Length = 552

 Score = 57.6 bits (138), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 34/244 (13%), Positives = 70/244 (28%), Gaps = 17/244 (6%)

Query: 179 FLTIQEGCDKFCTFCVVPY---TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW 235
           ++    GC   C FC+          E    L + + E   L   G      + +  N  
Sbjct: 182 YVEASRGCPFKCEFCLSSLDKTAWAFE----LDRFMAEMALLYRRGARNFKFVDRTFNLK 237

Query: 236 RGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKA-HGDLDVLMPYLHLP 294
               +   +     +      ++    L        D     +KA             + 
Sbjct: 238 VDFSVRILQFFLDRMKDEAGAVQAAPGLFVHFEVVPDSLHERLKALIAQFPAGSLQFEVG 297

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           +QS +  + + ++R+    +  + +  + +      + +D I G PGET   F    D +
Sbjct: 298 IQSFNPEVQQRISRKQDNAKTAENLRWLVTQS-QAHVHADLIFGLPGETLQSFAEGFDRL 356

Query: 355 DKIGYAQAFSFKYSPRLGTP--------GSNMLEQVDENVKAERLLCLQKKLREQQVSFN 406
            ++   +          GTP              Q    +     +      R Q+ +  
Sbjct: 357 HELAPHEIQFGILKRLRGTPITRHTLDFAMAYDPQTPYTILQTSTIDFATMQRIQRFARY 416

Query: 407 DACV 410
              V
Sbjct: 417 WEMV 420


>gi|77917961|ref|YP_355776.1| lipoyl synthase [Pelobacter carbinolicus DSM 2380]
 gi|84028220|sp|Q57390|LIPA_PELCD RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|77544044|gb|ABA87606.1| lipoic acid synthetase [Pelobacter carbinolicus DSM 2380]
          Length = 309

 Score = 57.6 bits (138), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 39/215 (18%), Positives = 73/215 (33%), Gaps = 10/215 (4%)

Query: 153 DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVD 212
           D  +    E  S  + G   KRG   F+ + + C + C FC V    G   +    +   
Sbjct: 49  DLHLHTVCEEASCPNLGECFKRGTATFMIMGDVCTRRCPFCDV--AHGRPAALDTEEPGH 106

Query: 213 EARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
            A  +    +  + +        R    DG    F+  + S+ +    V++        D
Sbjct: 107 LADAIGAMKLKYVVITSVT----RDDLEDGGAAHFAQCIESIRKKTEGVKVEILVP---D 159

Query: 273 MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAIS 332
               +  A  +L   +P +         R+          +E  +++ R +   P I   
Sbjct: 160 FRGHVDAALKNLGNCLPDVFNHNLETVPRLYAESRPGARYHESLRLLQRFKETYPGIPTK 219

Query: 333 SDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           S  ++G  GETD++    M  +   G       +Y
Sbjct: 220 SGLMLGL-GETDEEILEVMRDLRVHGCDMLTIGQY 253


>gi|320185398|gb|EFW60168.1| Lipoate synthase [Shigella flexneri CDC 796-83]
          Length = 234

 Score = 57.6 bits (138), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 32/183 (17%), Positives = 68/183 (37%), Gaps = 12/183 (6%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V    G  ++   ++ V  A+ + D  +  + +   +    R    DG   
Sbjct: 7   CTRRCPFCDV--AHGRPVAPDANEPVKLAQTIADMALRYVVITSVD----RDDLRDGGAQ 60

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAH-GDLDVLMPYLHLPVQSGSDRILK 304
            F+D + ++ E    +++       R   D  +         +  +    V     RI +
Sbjct: 61  HFADCITAIREKSPQIKIETLVPDFRGRMDRALDILTATPPDVFNHNLENV----PRIYR 116

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
            +          ++++R +   P+I   S  +VG  GET+++    M  + + G      
Sbjct: 117 QVRPGADYNWSLKLLERFKEAHPEIPTKSGLMVGL-GETNEEIIEVMRDLRRHGVTMLTL 175

Query: 365 FKY 367
            +Y
Sbjct: 176 GQY 178


>gi|301329146|ref|ZP_07222145.1| lipoyl synthase [Escherichia coli MS 78-1]
 gi|300844511|gb|EFK72271.1| lipoyl synthase [Escherichia coli MS 78-1]
          Length = 314

 Score = 57.6 bits (138), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 32/183 (17%), Positives = 68/183 (37%), Gaps = 12/183 (6%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V    G  ++   ++ V  A+ + D  +  + +   +    R    DG   
Sbjct: 94  CTRRCPFCDV--AHGRPVAPDANEPVKLAQTIADMALRYVVITSVD----RDDLRDGGAQ 147

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAH-GDLDVLMPYLHLPVQSGSDRILK 304
            F+D + ++ E    +++       R   D  +         +  +    V     RI +
Sbjct: 148 HFADCITAIREKSPQIKIETLVPDFRGRMDRALDILTATPPDVFNHNLENV----PRIYR 203

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
            +          ++++R +   P+I   S  +VG  GET+++    M  + + G      
Sbjct: 204 QVRPGADYNWSLKLLERFKEAHPEIPTKSGLMVGL-GETNEEIIEVMRDLRRHGVTMLTL 262

Query: 365 FKY 367
            +Y
Sbjct: 263 GQY 265


>gi|262382389|ref|ZP_06075526.1| oxygen-independent coproporphyrinogen III oxidase [Bacteroides sp.
           2_1_33B]
 gi|262295267|gb|EEY83198.1| oxygen-independent coproporphyrinogen III oxidase [Bacteroides sp.
           2_1_33B]
          Length = 375

 Score = 57.6 bits (138), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 30/198 (15%), Positives = 64/198 (32%), Gaps = 9/198 (4%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C K C +C   +    E+      +    +++            + +    G     ++ 
Sbjct: 11  CAKRCLYCD--FFSNTEMKYKEPYINALIKEMELRKGYIGNEALETIYFGGGTPSQLDEK 68

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPR--DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
            F  +  ++     +      T      DM    +    +       + + VQS     L
Sbjct: 69  DFGKIFEAIYRHFDVAEQAEITLEANPDDMKREYVSLLRNYP--FNRVSMGVQSFHPEDL 126

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIA-ISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           + +NRRH   +  + ++  +     I  IS D I G P +T   +   +    ++     
Sbjct: 127 RFLNRRHDREQAIKAVELCKEY--GITNISIDLIYGLPNQTQQAWEENLRQAIRLDVPHL 184

Query: 363 FSFKYSPRLGTPGSNMLE 380
            ++      GT    +LE
Sbjct: 185 SAYHLIYEEGTALYKLLE 202


>gi|186681618|ref|YP_001864814.1| coproporphyrinogen III oxidase [Nostoc punctiforme PCC 73102]
 gi|186464070|gb|ACC79871.1| putative oxygen-independent coproporphyrinogen III oxidase [Nostoc
           punctiforme PCC 73102]
          Length = 393

 Score = 57.6 bits (138), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 35/211 (16%), Positives = 76/211 (36%), Gaps = 12/211 (5%)

Query: 177 TAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLL---GQNVN 233
           +A++ I   C + C +C  P +   +  R   +  D   + ++    EI +    GQ + 
Sbjct: 13  SAYVHIPF-CRRRCFYCDFPVSVVGDRLR--GETSDTISQYVEVLCKEIAITPAFGQPLK 69

Query: 234 AWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM---SDCLIKAHGDLDVLMPY 290
                G      +   L   + E++    +        ++   +  L    G     +  
Sbjct: 70  TIFFGGGTPSLLSTEQLQRIVGELEKHFGIASGAEISMEIDPGTFDLAHIAGYRSAGVNR 129

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV-RPDIAISSDFIVGFPGETDDDFRA 349
           + L VQ+  + +L+   R H+  +    ++ I  V  P  A S D I G P ++ D ++ 
Sbjct: 130 VSLGVQAFQEELLQRAGRSHSVEDIFAAVELIHQVEIP--AFSLDLISGLPHQSLDQWQN 187

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++     +       +  +   GT      +
Sbjct: 188 SLTKAVALLPTHISIYDLTIEPGTAFGRYYK 218


>gi|86605492|ref|YP_474255.1| coproporphyrinogen III oxidase [Synechococcus sp. JA-3-3Ab]
 gi|86554034|gb|ABC98992.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Synechococcus sp. JA-3-3Ab]
          Length = 397

 Score = 57.6 bits (138), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 33/203 (16%), Positives = 69/203 (33%), Gaps = 16/203 (7%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN--GVCEITLLGQNVNAWRGKGLDGE 243
           C + C +C      G     +   +    ++L     G      L  +          G 
Sbjct: 29  CRQRCHYCDFATGLG-----TRELIETYVQRLCQEIGGAHRYRHLAGDPQPLTSIFFGGG 83

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLI-------KAHGDLDVLMPYLHLPVQ 296
             +    +  LS I   +R R       ++S           +  G  D+ +  + L VQ
Sbjct: 84  TPSL-LTVKQLSRILSQLRERIPFHPDCEISLEANPGTLTREQLAGYRDLGVNRISLGVQ 142

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
           +    +L +  R H   E  + +  +++V  +   + D I G P +T + ++ ++  V +
Sbjct: 143 AFQAELLAACGRLHGVEEIYEAVADLQAVGFE-NFNLDLIFGLPYQTLEHWQESLQAVLE 201

Query: 357 IGYAQAFSFKYSPRLGTPGSNML 379
           I       +  +   GT    + 
Sbjct: 202 INPTHVSVYDLTLEPGTRFGRLY 224


>gi|313902209|ref|ZP_07835617.1| oxygen-independent coproporphyrinogen III oxidase [Thermaerobacter
           subterraneus DSM 13965]
 gi|313467544|gb|EFR63050.1| oxygen-independent coproporphyrinogen III oxidase [Thermaerobacter
           subterraneus DSM 13965]
          Length = 482

 Score = 57.3 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 41/214 (19%), Positives = 75/214 (35%), Gaps = 12/214 (5%)

Query: 186 CDKFCTFCVV-PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD--G 242
           C + C +C    Y    E  R     +    + +D    +  L    V+ + G G     
Sbjct: 111 CRQRCYYCDFNTYLLDPEGKRRY---LAALERELDLLAADPGLTRPLVSVFVGGGTPSLL 167

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
           E      LL ++     L      T      +    +        +  L L +Q+  D +
Sbjct: 168 EPAELERLLEAVHRRFALAPGAEITVECNPGTLDEGRLRALRGGGVTRLSLGLQAVQDEL 227

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           L+++ R HT  +++   +R+R    D  ++ D I G PG+T   +  ++  V  +     
Sbjct: 228 LQAIGRDHTWADFQATYERVRRAGFD-NVNVDLIFGLPGQTLAQWEESLRAVVALEPEHV 286

Query: 363 FSFKYSPRLGTPGSNMLE----QVDENVKAERLL 392
             +      GTP     E     +     AER +
Sbjct: 287 SCYGLELHPGTPFHRRWEAGLLDLPGE-DAERAM 319


>gi|297521963|ref|ZP_06940349.1| lipoyl synthase [Escherichia coli OP50]
          Length = 314

 Score = 57.3 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 32/183 (17%), Positives = 68/183 (37%), Gaps = 12/183 (6%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V    G  ++   ++ V  A+ + D  +  + +   +    R    DG   
Sbjct: 87  CTRRCPFCDV--AHGRPVAPDANEPVKLAQTIADMALRYVVITSVD----RDDLRDGGAQ 140

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAH-GDLDVLMPYLHLPVQSGSDRILK 304
            F+D + ++ E    +++       R   D  +         +  +    V     RI +
Sbjct: 141 HFADCITAIREKSPQIKIETLVPDFRGRMDRALDILTATPPDVFNHNLENV----PRIYR 196

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
            +          ++++R +   P+I   S  +VG  GET+++    M  + + G      
Sbjct: 197 QVRPGADYNWSLKLLERFKEAHPEIPTKSGLMVGL-GETNEEIIEVMRDLRRHGVTMLTL 255

Query: 365 FKY 367
            +Y
Sbjct: 256 GQY 258


>gi|257463863|ref|ZP_05628249.1| coproporphyrinogen III oxidase [Fusobacterium sp. D12]
 gi|317061394|ref|ZP_07925879.1| oxygen-independent coproporphyrinogen III oxidase [Fusobacterium
           sp. D12]
 gi|313687070|gb|EFS23905.1| oxygen-independent coproporphyrinogen III oxidase [Fusobacterium
           sp. D12]
          Length = 460

 Score = 57.3 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 40/234 (17%), Positives = 83/234 (35%), Gaps = 27/234 (11%)

Query: 186 CDKFCTFCVVPYTRGIEISRSL-SQVVDEARKLIDNGVCEITLLGQNV---NAWRGKGLD 241
           C   C++C          S  +   V    R+ +     EI L G+ +            
Sbjct: 141 CPSKCSYCS-------FASYEITGGVGKYYREFVSTLEKEIRLTGEELRRNPQKIESIYF 193

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIK----AHGDLDVLMPY----LHL 293
           G     +     L +I  + R        ++ +    +        L++L  Y    + L
Sbjct: 194 GGGTPSTLTEEDLEQILKVFREEIDFRDVKEFTFEAGREDSITRKKLEILKKYGVDRVSL 253

Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
             QS  ++ LK +NR+     + ++    + +     I+ DFI+G P E+ +D   +++ 
Sbjct: 254 NPQSFQEKTLKKVNRKFNRAHFEEVYQDCKKL--GFIINMDFILGLPEESTEDMIDSLEQ 311

Query: 354 VDKIGYAQAFSFKYSPRLGTPGSNMLE--QVDENVKAERLLC-LQKKLREQQVS 404
           + K                   S + +  Q  E +  +RL   +   ++E+Q+ 
Sbjct: 312 LKKFEVENITLHS---LAFKRASKLAKGSQEREKIDRKRLEESIASLMKEKQLE 362


>gi|187778457|ref|ZP_02994930.1| hypothetical protein CLOSPO_02051 [Clostridium sporogenes ATCC
           15579]
 gi|187772082|gb|EDU35884.1| hypothetical protein CLOSPO_02051 [Clostridium sporogenes ATCC
           15579]
          Length = 383

 Score = 57.3 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 33/216 (15%), Positives = 79/216 (36%), Gaps = 18/216 (8%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C +C        E    +  +   +++++DN   +I      +    G        
Sbjct: 22  CMQKCLYCDFTSYGKKE-DLMMDYIKALSKEIVDNTKNKIIKT---IFIGGGTPTYLSLE 77

Query: 246 TFSDLLYSLSEIKGLVRLRYTTS----HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
             + L  +L  I     + +T         +    L+K+ G     +  L + +QS  + 
Sbjct: 78  ALNILKDTLKTIDKKENIEFTVEGNPGTFTEKKLKLLKSMG-----VNRLSIGLQSSKNT 132

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
           +LK++ R H+  ++       R    +  I+ D +   P ++ DD++ T+  V  +    
Sbjct: 133 LLKTLGRIHSFEDFVHSFKMARKEGFN-NINVDLMFALPNQSLDDWKETLLEVVDLNPEH 191

Query: 362 AFSFKYSPRLGTPGSNMLE----QVDENVKAERLLC 393
              +      GT   N+ +    ++ +  +  ++  
Sbjct: 192 LSCYSLIIEEGTSFYNLYKNSLLKLPKEEEERKMYE 227


>gi|323141210|ref|ZP_08076111.1| radical SAM domain protein [Phascolarctobacterium sp. YIT 12067]
 gi|322414353|gb|EFY05171.1| radical SAM domain protein [Phascolarctobacterium sp. YIT 12067]
          Length = 336

 Score = 57.3 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 43/199 (21%), Positives = 73/199 (36%), Gaps = 18/199 (9%)

Query: 185 GCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK 244
           GC   C FC         IS      V  A++ +      +     N  A+ G    G  
Sbjct: 12  GCPHQCVFC-----NQKTISGQKLAAVAGAKEQLARWRSWLRPSVVNEAAFYGGSFTGLP 66

Query: 245 CTFSDLLYSLSEIK------GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
               + L +L++        G VRL     +  +    L++ HG     +  + L VQS 
Sbjct: 67  LELQEELLALTDALLAEGFIGSVRLSTRPDYIDEERLQLLQCHG-----VRLVELGVQSL 121

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
            DR+L +  R HTA +    +  ++  R    +    +VG P ++ D  + T+     + 
Sbjct: 122 DDRVLAAAERGHTAAQVAPAVALLK--RFGFQVGLQLMVGMPEQSFDSVQETVRKAIAMQ 179

Query: 359 YAQAFSFKYSPRLGTPGSN 377
              A  +      GTP + 
Sbjct: 180 PDVARIYPLLVIKGTPLAA 198


>gi|295112842|emb|CBL31479.1| coproporphyrinogen III oxidase, anaerobic [Enterococcus sp. 7L76]
          Length = 394

 Score = 57.3 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 50/254 (19%), Positives = 98/254 (38%), Gaps = 28/254 (11%)

Query: 177 TAFLTIQEGCDKFCTFCVV--PYTRGIEISRSLSQVVDEARKLI----DNGVCEITLLGQ 230
           +A++ I   C+  C +C     +  G  +   +  ++ E R       +  +  I + G 
Sbjct: 17  SAYIHIPF-CEHICYYCDFNKVFLEGQPVDEYIQSLLKEIRLTQALYPEQEMKTIYIGGG 75

Query: 231 NVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT-SHPRDMSDCLIKAHGDLDVLMP 289
              +   K LD        +   L       R  +T  ++P D++   ++   +    + 
Sbjct: 76  TPTSLSAKQLD---VLLKGVREQL---TFDDRNEFTVEANPGDLTQEKLQVMKNYG--VN 127

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI-RSVRPDIAISSDFIVGFPGETDDDFR 348
            L + VQ+  DR+LK + R+HTA +  + +  + +    +++I  D I   PG+T + FR
Sbjct: 128 RLSMGVQTFDDRLLKKIGRKHTAADVYETMKFLEKENFTNVSI--DLIYALPGQTLESFR 185

Query: 349 ATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE----QVDENVKA-----ERLLCLQKKLR 399
            T+     +       +       T   N +     Q+ E         E +  ++KK R
Sbjct: 186 DTLTRALALDLPHYSLYSLILENKTMFMNWVRQGRLQLPEEEIEAQMFDETIEAMEKKGR 245

Query: 400 EQQVSFNDACVGQI 413
            Q    N A  G+ 
Sbjct: 246 HQYEVSNFALTGKE 259


>gi|239908351|ref|YP_002955092.1| hypothetical protein DMR_37150 [Desulfovibrio magneticus RS-1]
 gi|239798217|dbj|BAH77206.1| hypothetical protein [Desulfovibrio magneticus RS-1]
          Length = 359

 Score = 57.3 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 34/205 (16%), Positives = 56/205 (27%), Gaps = 22/205 (10%)

Query: 175 GVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ--VVDEARKLIDNGVCEITLLGQNV 232
            +   +     C   C +C +  T        L    ++D AR +   G   I L     
Sbjct: 44  PLRGIVEFSNICANDCLYCGIRATNANIPRYRLDDAVILDLARGMEGQGQTTIVLQSGEA 103

Query: 233 NAWRGKGLDGEKCTFSDLLYSLS---EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMP 289
            +  G    G   +       L+    +    R  Y       M   L++       L  
Sbjct: 104 PSRDGDAALGRLVSRLKAETRLAVTLSVGNRPREVYAHWRDCGMDRYLLRFETSDPALFA 163

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
            LH       D  L          +  + +  +  +   +     F+ G PGET      
Sbjct: 164 RLHP------DCTLS---------QRLRCLGDLLDL--GVQTGGGFMTGLPGETLSTGAD 206

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTP 374
            + L   +         Y P   TP
Sbjct: 207 NILLCRDLDLDMIGLGPYIPHPDTP 231


>gi|157737711|ref|YP_001490394.1| lipoyl synthase [Arcobacter butzleri RM4018]
 gi|315637487|ref|ZP_07892697.1| lipoic acid synthetase [Arcobacter butzleri JV22]
 gi|157699565|gb|ABV67725.1| lipoic acid synthetase [Arcobacter butzleri RM4018]
 gi|315478205|gb|EFU68928.1| lipoic acid synthetase [Arcobacter butzleri JV22]
          Length = 291

 Score = 57.3 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 46/281 (16%), Positives = 96/281 (34%), Gaps = 24/281 (8%)

Query: 135 RLPELLERARFGKRVVDTDYSVEDKFERLSI------VDGGYNRKRGVTAFLTIQEGCDK 188
           + PE L +       V+ +  ++D     +I       +           FL +   C +
Sbjct: 8   KKPEWLRKKLTPHTQVEMENLLKDVGGLHTICQEAKCPNISECFANKNATFLILGNICTR 67

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS 248
            CT+C V   +  E+   LS++      ++  G+  + +        R    DG    F 
Sbjct: 68  RCTYCNVTTGKPTEV--DLSEIQKVTTSVLKLGLKFVVITSP----ARDDLPDGGAEQFF 121

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
            +   + E     ++       +   + L +       +     +     +   L  + R
Sbjct: 122 RVTQDILEKSPQTKVEILIPDFKGKVESLKRVIASGATI-----IGHNVETVPSLYRIRR 176

Query: 309 RHTAYEYRQIIDRIRSVRPD-IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
             T     +++ R++ +  D +   S  +VG  GET+++       +  +G       +Y
Sbjct: 177 NGTYERSLEVLKRLKELGGDKVKTKSALMVGL-GETEEEMVQVFKDLLAVGCKFLSIGQY 235

Query: 368 SPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDA 408
                 P  +  E+V E VK E+    +K   +    F  A
Sbjct: 236 L----APSGD-YEKVIEFVKPEQFARYEKLAYDLGFEFVKA 271


>gi|189425003|ref|YP_001952180.1| radical SAM protein [Geobacter lovleyi SZ]
 gi|189421262|gb|ACD95660.1| Radical SAM domain protein [Geobacter lovleyi SZ]
          Length = 374

 Score = 57.3 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 38/207 (18%), Positives = 73/207 (35%), Gaps = 15/207 (7%)

Query: 176 VTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS-QVVDEARKLIDNGVCEITLLGQNVNA 234
           +  F     GC   C FC      G + S   + Q+ +  ++ +         +      
Sbjct: 5   IIPFFIPHAGCPHTCLFCNQHMISGAQQSVPSARQISETVQQWLGRSPNRAAEVA----- 59

Query: 235 WRGKGLDGEKCT----FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY 290
           + G               + +  L E + +  +R +T  P  + + ++         +  
Sbjct: 60  FYGGSFTLLPRKQQEQLLEAVQPLLEQQKIRNIRIST-RPDALDEAVLAFLAGHK--VTT 116

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
           + + VQS  D +L   NR HTA +    I R+RS      + +  + G PG+T     A+
Sbjct: 117 IEVGVQSLDDLVLLQSNRGHTAADSMAAIQRVRSA--GFQVGAQLLPGLPGDTRAKALAS 174

Query: 351 MDLVDKIGYAQAFSFKYSPRLGTPGSN 377
           +  V   G      +      GT  ++
Sbjct: 175 VQGVIAAGAQFVRIYPAVVLSGTALAD 201


>gi|323703756|ref|ZP_08115395.1| lipoic acid synthetase [Desulfotomaculum nigrificans DSM 574]
 gi|323531280|gb|EGB21180.1| lipoic acid synthetase [Desulfotomaculum nigrificans DSM 574]
          Length = 281

 Score = 57.3 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 30/195 (15%), Positives = 66/195 (33%), Gaps = 11/195 (5%)

Query: 173 KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNV 232
           +R    F+ +   C + C+FC VP  +  ++     + V  A  + D G+  + +     
Sbjct: 45  RRQTATFMILGNICTRNCSFCAVPKGKPEKV--EAKEPVRVAEAVADLGLKHVVITSVT- 101

Query: 233 NAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLH 292
              R    DG    F+  +  +  +     +       +     L         ++   H
Sbjct: 102 ---RDDLPDGGAGHFAATVREIKYLNPDTSIEVLIPDFKGDRVALRTVVEAAPDVI--GH 156

Query: 293 LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352
                           R+      Q+++  + +  +I   S  ++G  GE + + R T+ 
Sbjct: 157 NLETVPRLYRRARAMARYDRS--LQVLETCKKLNKNIFTKSGIMLGL-GEQEWEVRQTLQ 213

Query: 353 LVDKIGYAQAFSFKY 367
            + +IG       +Y
Sbjct: 214 DLRQIGCDFLTLGQY 228


>gi|302336598|ref|YP_003801804.1| radical SAM protein [Spirochaeta smaragdinae DSM 11293]
 gi|301633783|gb|ADK79210.1| Radical SAM domain protein [Spirochaeta smaragdinae DSM 11293]
          Length = 638

 Score = 57.3 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 46/258 (17%), Positives = 81/258 (31%), Gaps = 50/258 (19%)

Query: 183 QEGCDKFCTFCVVPYTRGIEIS-RSLSQVVDEARKLIDNGVCEITLLGQ-------NVNA 234
             GC   C+FC + + +G  I+ RS   ++ EA+KLI +   +  +          +  A
Sbjct: 341 SRGCFGGCSFCALTFHQGRIITPRSKESLLREAQKLIADPDFKGYIHDVGGPTANFHTPA 400

Query: 235 WRGKGLDG------------------EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDC 276
             G+   G                  +   + D+L SL ++ G+ ++   +         
Sbjct: 401 CEGQKHRGACSNRQCLFPKPCPSLKVDHTAYLDVLKSLRKLPGVKKVFIRS--GIRFDYL 458

Query: 277 LIKAHGDLDVLMPYLHLPVQ------SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330
           L+  +      +   H+  Q          R L++M +      Y Q           I 
Sbjct: 459 LLDENRSFLKELVAYHISGQLKVAPEHAGSRTLEAMGKP-PIEVYEQFSRLFYEETKRIG 517

Query: 331 ----ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ----- 381
               +    I G PG T D+       + K G+       + P  GT  + M        
Sbjct: 518 KKQYLIPYLIAGHPGSTLDEAVELALFLKKSGFIPDQVQDFYPTPGTLSTCMWATGIDPR 577

Query: 382 ------VDENVKAERLLC 393
                 V    K   L  
Sbjct: 578 TMKPIFVPRGEKERHLQR 595


>gi|300931558|ref|ZP_07146873.1| lipoyl synthase [Escherichia coli MS 187-1]
 gi|300460644|gb|EFK24137.1| lipoyl synthase [Escherichia coli MS 187-1]
          Length = 321

 Score = 57.3 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 34/194 (17%), Positives = 72/194 (37%), Gaps = 12/194 (6%)

Query: 175 GVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA 234
           G   F+ +   C + C FC V    G  ++   ++ V  A+ + D  +  + +   +   
Sbjct: 83  GTATFMILGVFCTRRCPFCDV--AHGRPVAPDANEPVKLAQTIADMALRYVVITSVD--- 137

Query: 235 WRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAH-GDLDVLMPYLHL 293
            R    DG    F+D + ++ E    +++       R   D  +         +  +   
Sbjct: 138 -RDDLRDGGAQHFADCITAIREKSPQIKIETLVPDFRGRMDRALDILTATPPDVFNHNLE 196

Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
            V     RI + +          ++++R +   P+I   S  +VG  GET+++    M  
Sbjct: 197 NV----PRIYRQVRPGADYNWSLKLLERFKEAHPEIPTKSGLMVGL-GETNEEIIEVMRD 251

Query: 354 VDKIGYAQAFSFKY 367
           + + G       +Y
Sbjct: 252 LRRHGVTMLTLGQY 265


>gi|300725173|ref|YP_003714501.1| coproporphyrinogen III oxidase [Xenorhabdus nematophila ATCC 19061]
 gi|297631718|emb|CBJ92437.1| coproporphyrinogen III oxidase, O2-independent, SAM and NAD(P)H
           dependent [Xenorhabdus nematophila ATCC 19061]
          Length = 457

 Score = 57.3 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 42/253 (16%), Positives = 83/253 (32%), Gaps = 28/253 (11%)

Query: 172 RKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQN 231
             R ++ ++ I   C K C FC         ++R   +  +    L    +    L  Q 
Sbjct: 49  HDRPLSLYIHIPF-CHKLCYFC----GCNKLVTRQKHKADEYLNVLEKEIITRAKLFSQR 103

Query: 232 VNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY---------TTSHPRDMSDCLIKAHG 282
             +    G  G   T+ D    +S +  ++R  +             PR++   +I    
Sbjct: 104 KVSQMHWG--GGTPTYLD-KAQISRLMSMLRSHFHFLPDAELSLEIDPREIELDVIDHLR 160

Query: 283 DLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS-DFIVGFPG 341
                   L + VQ  +  + + +NR         +++R R        +S D I G P 
Sbjct: 161 HEG--FNRLSMGVQDFNKEVQRLVNREQDEEFIFALVNRARET--GFTSTSIDLIYGLPK 216

Query: 342 ETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM---LEQVDENVKAERLLCLQKKL 398
           +T + F  T+  V  +   +   F Y+       +      + +    +   L  LQ  +
Sbjct: 217 QTPESFAFTLQRVLALSPDRLSVFNYAHLPDVFAAQRKIKEQDLPNATQK--LDILQATI 274

Query: 399 REQQVSFNDACVG 411
                +     +G
Sbjct: 275 STLTGNGYQ-FIG 286


>gi|16766468|ref|NP_462083.1| hypothetical protein STM3168 [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|62181682|ref|YP_218099.1| hypothetical protein SC3112 [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|161616155|ref|YP_001590120.1| hypothetical protein SPAB_03957 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|167551920|ref|ZP_02345673.1| protein YgiQ [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA29]
 gi|167990283|ref|ZP_02571383.1| protein YgiQ [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|168231765|ref|ZP_02656823.1| radical SAM N- family protein [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|168238124|ref|ZP_02663182.1| radical SAM N- family protein [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|168262876|ref|ZP_02684849.1| protein YgiQ [Salmonella enterica subsp. enterica serovar Hadar
           str. RI_05P066]
 gi|168463624|ref|ZP_02697541.1| protein YgiQ [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
 gi|194445866|ref|YP_002042433.1| hypothetical protein SNSL254_A3424 [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194468732|ref|ZP_03074716.1| protein YgiQ [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
 gi|194733907|ref|YP_002116123.1| hypothetical protein SeSA_A3352 [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197247742|ref|YP_002148095.1| hypothetical protein SeAg_B3349 [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197262197|ref|ZP_03162271.1| protein YgiQ [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA23]
 gi|198245386|ref|YP_002217146.1| hypothetical protein SeD_A3519 [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|200389002|ref|ZP_03215614.1| radical SAM N- family protein [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|205354085|ref|YP_002227886.1| hypothetical protein SG3065 [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|207858427|ref|YP_002245078.1| hypothetical protein SEN3011 [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|47606308|sp|Q8ZM03|YGIQ_SALTY RecName: Full=UPF0313 protein ygiQ
 gi|16421723|gb|AAL22042.1| putative Fe-S oxidoreductase family 2 [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|62129315|gb|AAX67018.1| putative Fe-S oxidoreductase family 2 [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|161365519|gb|ABX69287.1| hypothetical protein SPAB_03957 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194404529|gb|ACF64751.1| protein YgiQ [Salmonella enterica subsp. enterica serovar Newport
           str. SL254]
 gi|194455096|gb|EDX43935.1| protein YgiQ [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
 gi|194709409|gb|ACF88630.1| protein YgiQ [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|195633764|gb|EDX52178.1| protein YgiQ [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
 gi|197211445|gb|ACH48842.1| protein YgiQ [Salmonella enterica subsp. enterica serovar Agona
           str. SL483]
 gi|197240452|gb|EDY23072.1| protein YgiQ [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA23]
 gi|197288995|gb|EDY28366.1| radical SAM N- family protein [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|197939902|gb|ACH77235.1| protein YgiQ [Salmonella enterica subsp. enterica serovar Dublin
           str. CT_02021853]
 gi|199606100|gb|EDZ04645.1| radical SAM N- family protein [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|205273866|emb|CAR38866.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|205323309|gb|EDZ11148.1| protein YgiQ [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA29]
 gi|205331163|gb|EDZ17927.1| protein YgiQ [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|205333887|gb|EDZ20651.1| radical SAM N- family protein [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|205348374|gb|EDZ35005.1| protein YgiQ [Salmonella enterica subsp. enterica serovar Hadar
           str. RI_05P066]
 gi|206710230|emb|CAR34587.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|261248298|emb|CBG26135.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267995357|gb|ACY90242.1| hypothetical protein STM14_3839 [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301159722|emb|CBW19241.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|312914193|dbj|BAJ38167.1| hypothetical protein STMDT12_C32240 [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|322716167|gb|EFZ07738.1| Elongator protein [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. A50]
 gi|323131528|gb|ADX18958.1| UPF0313 protein ygiQ [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 4/74]
 gi|326624922|gb|EGE31267.1| Elongator protein 3/MiaB/NifB [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
 gi|326629202|gb|EGE35545.1| radical SAM N- family protein [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
 gi|332990034|gb|AEF09017.1| hypothetical protein STMUK_3157 [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 723

 Score = 57.3 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 52/297 (17%), Positives = 100/297 (33%), Gaps = 58/297 (19%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDN--GVCEIT--LLGQNVNA 234
           + I  GC   C+FC +    G  I SRS   +++E   + D   G   +   L G   N 
Sbjct: 380 INIMRGCFGGCSFCSITEHEGRIIQSRSEDSIINEIEAIRDTVPGFTGVISDLGGPTANM 439

Query: 235 WR----------------------GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
           +                          +D +     +L     E+KG+ ++   +    D
Sbjct: 440 YMLRCKSPRAEQTCRRLSCVYPDICPHMDTDHTPTINLYRRARELKGIKKILIASGVRYD 499

Query: 273 MSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRRH--TAYEYRQIIDRI-RSVRP 327
           ++    +   +L    +  YL +  +   +  L  M +    +   ++++ D   +    
Sbjct: 500 IAVEDPRYIKELASHHVGGYLKIAPEHTEEGPLSKMMKPGMGSYDRFKELFDLYSKQAGK 559

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGY--AQAFSFKYSPR-----LGTPGSNMLE 380
           +  +   FI   PG  D+D       + +  +   Q  +F  SP      +   G N L 
Sbjct: 560 EQYLIPYFISAHPGTRDEDMVNLALWLKRHRFRLDQVQNFYPSPLANSTTMYYTGKNPLG 619

Query: 381 QV---DENV---KAERLLCLQKKL-------------REQQVSFNDACVGQIIEVLI 418
           ++    E+V   K +R   L K L             +  +       +G   E L+
Sbjct: 620 KIGYKSEDVVVPKGDRQRRLHKALLRYHDPANWPLIRQALEAMGKKHLIGGRRECLV 676


>gi|87125010|ref|ZP_01080857.1| lipoic acid synthetase [Synechococcus sp. RS9917]
 gi|86167330|gb|EAQ68590.1| lipoic acid synthetase [Synechococcus sp. RS9917]
          Length = 292

 Score = 57.3 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 33/198 (16%), Positives = 62/198 (31%), Gaps = 11/198 (5%)

Query: 175 GVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA 234
           G   FL +  GC + C +C +            ++       +   G+  + +   N   
Sbjct: 51  GTATFLIMGPGCTRACPYCDI-DFDKSVRELDPTEPERLGEAVARLGLRHVVITSVN--- 106

Query: 235 WRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP 294
            R    DG    F   +  + +   L  +           + L         ++ +    
Sbjct: 107 -RDDLNDGGASQFVACIQQVRQRSPLTTIELLIPDFCGDWNALATVMDAAPDVLNHNIET 165

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           V   S          ++     +++ R+R   P     S  +VG  GETD + R TM  +
Sbjct: 166 V--PSLYKRARPQGMYSRS--LELLQRVREGWPKAYSKSGLMVGL-GETDAEVRETMADL 220

Query: 355 DKIGYAQAFSFKY-SPRL 371
            +         +Y SP  
Sbjct: 221 RRHAVDIVTIGQYLSPGP 238


>gi|121281929|gb|ABM53553.1| putative lipoyl synthase [uncultured beta proteobacterium CBNPD1
           BAC clone 578]
          Length = 234

 Score = 57.3 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 30/185 (16%), Positives = 61/185 (32%), Gaps = 12/185 (6%)

Query: 184 EGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
           + C + C FC V + R   +     +  + A+ +    +  + +   +    R    DG 
Sbjct: 5   DKCTRRCPFCDVGHGRPDPL--DPEEPKNLAKTIGALKLNYVVITSVD----RDDLKDGG 58

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAH-GDLDVLMPYLHLPVQSGSDRI 302
              F D +          ++       R   D  +         +M +    V     R+
Sbjct: 59  AQHFVDCIRETRVASPQTKIEVLVPDFRGRDDRALDILKAAPPDVMNHNLETV----PRL 114

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
            K             ++ + ++  P +   S  +VG  GETD++  A M  + + G    
Sbjct: 115 YKEARPGSDYAFSLNLLKKFKAAVPGVPTKSGLMVGL-GETDEEILAVMRDLREHGVDML 173

Query: 363 FSFKY 367
              +Y
Sbjct: 174 TIGQY 178


>gi|254974349|ref|ZP_05270821.1| putative radical SAM superfamily protein [Clostridium difficile
           QCD-66c26]
 gi|255091744|ref|ZP_05321222.1| putative radical SAM superfamily protein [Clostridium difficile CIP
           107932]
 gi|255313473|ref|ZP_05355056.1| putative radical SAM superfamily protein [Clostridium difficile
           QCD-76w55]
 gi|255516161|ref|ZP_05383837.1| putative radical SAM superfamily protein [Clostridium difficile
           QCD-97b34]
 gi|255649257|ref|ZP_05396159.1| putative radical SAM superfamily protein [Clostridium difficile
           QCD-37x79]
 gi|306519359|ref|ZP_07405706.1| putative radical SAM superfamily protein [Clostridium difficile
           QCD-32g58]
          Length = 312

 Score = 57.3 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 37/239 (15%), Positives = 81/239 (33%), Gaps = 35/239 (14%)

Query: 174 RGVTAFLTIQEGCDKFCTFC---VVPYTRGIEISR------SLSQVVDEARKLIDNGVCE 224
              TA++ I E C   C+FC   +   TR  ++SR      S  +++D  +      +  
Sbjct: 22  PPTTAYIMIGEKCINKCSFCSQSIESSTRKDKLSRVIWPEFSKEEILDALKAYKGKNIKR 81

Query: 225 ITL---LGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAH 281
           I +     +  +      ++         +   ++++   +++   S   D     I A 
Sbjct: 82  ICIQSMASEEAHNSVLDFINYISGKIDMPISLSAKLENDEQIKKFFSVGVDKIGIAIDA- 140

Query: 282 GDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPG 341
                            S++ L    + +   E  + I  +    P+  IS+  IVG  G
Sbjct: 141 -----------------SNKELYEKIKGNNYDEKLKFITEMSKSYPN-KISTHIIVGM-G 181

Query: 342 ETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLRE 400
           E+ +D       + +        F ++P  GT    + +         R+  +   + +
Sbjct: 182 ESHEDIYNLYIYLKENDVT-ISLFAFTPVRGTKMEKINQ--PSIESYRRVQLMSYMINK 237


>gi|150390512|ref|YP_001320561.1| radical SAM domain-containing protein [Alkaliphilus metalliredigens
           QYMF]
 gi|149950374|gb|ABR48902.1| Radical SAM domain protein [Alkaliphilus metalliredigens QYMF]
          Length = 347

 Score = 57.3 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 30/196 (15%), Positives = 71/196 (36%), Gaps = 10/196 (5%)

Query: 174 RGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVN 233
           R +       EGC   C+FC      G     ++ ++    +  +     +     Q   
Sbjct: 5   RYIIPIFIPHEGCPNDCSFCNQKTIAGTSSQVNVEKIETIIQSYLKLYTNQQK---QREI 61

Query: 234 AWRGKGLDGEKCTFSDLLYSLS---EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY 290
           A+ G    G          +++   + KGL+     ++ P  +++ +++        +  
Sbjct: 62  AFYGGSFTGLPMEVQKQYLTVAFNYKKKGLIDGIRLSTRPDYINEEILQQLKFYG--VTI 119

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
           + L VQS ++ +LK   R H+  +  + +  IR    +  +    ++G  G+T+     T
Sbjct: 120 IELGVQSTNEEVLKMNKRGHSKDDVFKAVKSIRKY--EFQLGLQMMIGLFGDTEQRIEQT 177

Query: 351 MDLVDKIGYAQAFSFK 366
              +  +       + 
Sbjct: 178 AKDLISLRPDFVRIYP 193


>gi|307243935|ref|ZP_07526060.1| radical SAM protein, TIGR01212 family [Peptostreptococcus stomatis
           DSM 17678]
 gi|306492757|gb|EFM64785.1| radical SAM protein, TIGR01212 family [Peptostreptococcus stomatis
           DSM 17678]
          Length = 317

 Score = 57.3 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 41/207 (19%), Positives = 76/207 (36%), Gaps = 18/207 (8%)

Query: 181 TIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE---ARKLIDNGVCEITLLG--QNVNAW 235
           +I  G    C +C      G         +V +    +++++    +   +G  Q     
Sbjct: 48  SISYG---GCAYCS-KDGSGDFAGNPRDNLVKQFKDIKEMMEKKWPQAKYIGYFQAFTNT 103

Query: 236 RGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLD-VLMPYLHLP 294
                        D   ++ +  G+V L  +T     + D L+     L+     ++ L 
Sbjct: 104 Y-----APLEVLKDKYETILDQDGVVGLSISTRSDC-IDDDLLDYLAQLNTRTNLWVELG 157

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           +Q+  D+    +NR H    +   ++R+RS   +I + +  I G PGET D    T+  V
Sbjct: 158 LQTVHDQTSNIINRGHGLDVFVDCVNRLRSR--EIEVVAHVINGLPGETYDMMMETIRRV 215

Query: 355 DKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
             +              GTP  NML +
Sbjct: 216 SHMDIQGVKIHLLHVIKGTPMVNMLNK 242


>gi|284920428|emb|CBG33489.1| lipoic acid synthetase [Escherichia coli 042]
          Length = 321

 Score = 57.3 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 32/183 (17%), Positives = 68/183 (37%), Gaps = 12/183 (6%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V    G  ++   ++ V  A+ + D  +  + +   +    R    DG   
Sbjct: 94  CTRRCPFCDV--AHGRPVAPDANEPVKLAQTIADMALRYVVITSVD----RDDLRDGGAQ 147

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAH-GDLDVLMPYLHLPVQSGSDRILK 304
            F+D + ++ E    +++       R   D  +         +  +    V     RI +
Sbjct: 148 HFADCITAIREKSPQIKIETLVPDFRGRMDRALDILTATPPDVFNHNLENV----PRIYR 203

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
            +          ++++R +   P+I   S  +VG  GET+++    M  + + G      
Sbjct: 204 QVRPGADYNWSLKLLERFKEAHPEIPTKSGLMVGL-GETNEEIIEVMRDLRRHGVTMLTL 262

Query: 365 FKY 367
            +Y
Sbjct: 263 GQY 265


>gi|218130507|ref|ZP_03459311.1| hypothetical protein BACEGG_02096 [Bacteroides eggerthii DSM 20697]
 gi|217987293|gb|EEC53623.1| hypothetical protein BACEGG_02096 [Bacteroides eggerthii DSM 20697]
          Length = 602

 Score = 57.3 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 44/277 (15%), Positives = 95/277 (34%), Gaps = 56/277 (20%)

Query: 151 DTDYSVEDKFERLSIVDGGYNR---KRGVTAFLTIQEGCDKFCTFCVVPYTRGIE-ISRS 206
           + D+S +  + RL        R      +   + I  GC   C FC +   +G   +SRS
Sbjct: 271 ELDHSFDLPYTRLPHPKYKGKRIPAYDMIKFSVNIHRGCFGGCAFCTISAHQGKFIVSRS 330

Query: 207 LSQVVDEARKLI---DNGVCEITLLGQNVNAWRGKGLDGEKCT----------------- 246
              ++ E + ++   D       L G + N ++ +G D   C                  
Sbjct: 331 KESILKEVKAVMGLPDFKGYLSDLGGPSANMYKMRGNDENICKKCKRPSCIHPKVCPNLN 390

Query: 247 -----FSDLLYSLSEIKGLVRLRYT-----------------TSHPRDMSDCLIKAHGDL 284
                  D+ +++  + G+ +                       + ++ +  LI  H   
Sbjct: 391 TDHGPLLDIYHAVDSLPGIKKSFIGSGVRYDLLLHQSKDAGINKNTQEYTRELIARH--- 447

Query: 285 DVLMPYLHLPVQSGSDRILKSMNRRHTAYE--YRQIIDRIRSVRPDIA--ISSDFIVGFP 340
             +   L +  +  S+R+L  M +   +    +++I DRI +    +   +   FI   P
Sbjct: 448 --VSGRLKVAPEHTSERVLNIMRKPPFSQFGEFKKIFDRI-NHEEGLRQQLIPYFISSHP 504

Query: 341 GETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
           G  ++D      +  ++ +       ++P   T  + 
Sbjct: 505 GCKEEDMAELAVITKRLDFHLEQVQDFTPTPMTVATE 541


>gi|187777464|ref|ZP_02993937.1| hypothetical protein CLOSPO_01031 [Clostridium sporogenes ATCC
           15579]
 gi|187774392|gb|EDU38194.1| hypothetical protein CLOSPO_01031 [Clostridium sporogenes ATCC
           15579]
          Length = 310

 Score = 57.3 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 30/199 (15%), Positives = 66/199 (33%), Gaps = 15/199 (7%)

Query: 188 KFCTFCVVPYT------RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD 241
             C +C    +      R  +I +    +    ++   +G           N +    + 
Sbjct: 46  GGCIYCSERGSGDFAGDRNFKIYKQFEDIKKIMKEKWSSGKYIAYFQA-YTNTYAPVDIL 104

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
            EK   +     +  +    R         ++ + L         +  ++ L +Q+ +D 
Sbjct: 105 REKYEEAMNEKGVVALAIATRPDCLDEEVLNLIEEL------SKKIYIWVELGLQTVNDE 158

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
             K +NR +    + + +  ++    DI + +  I G PGET +D   T+  + K+    
Sbjct: 159 TAKIINRGYKLNVFEKAVKNLKERNIDIVVHT--IFGLPGETKEDMIRTVKYISKLDIQG 216

Query: 362 AFSFKYSPRLGTPGSNMLE 380
                      TP   + E
Sbjct: 217 VKFHLLHLLKDTPLVKLYE 235


>gi|188590858|ref|YP_001795458.1| lipoyl synthase [Cupriavidus taiwanensis LMG 19424]
 gi|238692921|sp|B2AG37|LIPA_CUPTR RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|170937752|emb|CAP62736.1| lipoyl/lipoate synthase, an iron-sulfur enzyme [Cupriavidus
           taiwanensis LMG 19424]
          Length = 334

 Score = 57.3 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 35/208 (16%), Positives = 71/208 (34%), Gaps = 12/208 (5%)

Query: 161 ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN 220
           E  S  + G    +G   F+ + + C + C FC V + R   +   +++  + AR +   
Sbjct: 82  EEASCPNIGECFGKGTATFMIMGDKCTRRCPFCDVGHGRPDPL--DVNEPGNLARTIAQL 139

Query: 221 GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKA 280
            +  + +   +    R    DG    + D +    E+    R+       R   D  +  
Sbjct: 140 KLNYVVITSVD----RDDLRDGGAQHYVDCISQTRELSPATRIEVLVPDFRGRLDKALDI 195

Query: 281 H-GDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGF 339
                  +M +    V     R+ K            +++   +   P++   S  +VG 
Sbjct: 196 LQACPPDVMNHNMETV----PRLYKQARPGADYAHSLKLLQEFKRRNPNVPTKSGLMVGL 251

Query: 340 PGETDDDFRATMDLVDKIGYAQAFSFKY 367
            GETD++    M  +           +Y
Sbjct: 252 -GETDEEILEVMRDMRAHDIDMLTIGQY 278


>gi|86609801|ref|YP_478563.1| radical SAM domain-containing protein [Synechococcus sp.
           JA-2-3B'a(2-13)]
 gi|86558343|gb|ABD03300.1| radical SAM domain protein [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 518

 Score = 57.3 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 52/349 (14%), Positives = 108/349 (30%), Gaps = 41/349 (11%)

Query: 56  VNSMDDAD-----LIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVA 110
           V    +AD     L++L+   ++    +  ++ + +   L       G     V      
Sbjct: 55  VADETEADWQWCDLVILSAMLVQ---KQDFHALIRKAVQLGKKVAVGGPYPTSV------ 105

Query: 111 QAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGY 170
               + +   +  + +  G  T     + LE  +        +    D  +         
Sbjct: 106 --PQDALESGAHYLVLDEGEVTIPAFVKALEAGQESGIFRAAEKP--DVTQSPLPRFDLL 161

Query: 171 NRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVCEITLLG 229
              +     +   +GC   C FC +    G +  ++  SQ++ E + L D G      + 
Sbjct: 162 PMDQYFMMSVQFSQGCPFNCEFCDIISLYGRKPRTKEPSQMLAELQALYDLGWRGSVFVV 221

Query: 230 QNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM----SDCLIKAHGDLD 285
            +          G +      L  L          +T      +     + L++   +  
Sbjct: 222 DD-------NFIGNQRNVKRFLRELIPWSQKRNYPFTFMTEASVNLAEDEELMRLMVEAG 274

Query: 286 VLMPYLHLPVQSGSDRILKSMNR-RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETD 344
                + L +++     L+   + ++T +   +   +I      + I + FI+GF GE  
Sbjct: 275 FYA--VFLGIETPDQDSLQMTQKLQNTRHPLVEACRKINDA--GLLIYAGFILGFDGERP 330

Query: 345 DDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLC 393
                    V++ G  Q           T   N L+      K ERLL 
Sbjct: 331 GAGDRIQAFVEQTGIPQPMLGILQALPNTQLWNRLK------KEERLLE 373


>gi|30064369|ref|NP_838540.1| hypothetical protein S3263 [Shigella flexneri 2a str. 2457T]
 gi|56480241|ref|NP_708831.2| hypothetical protein SF3060 [Shigella flexneri 2a str. 301]
 gi|30042626|gb|AAP18350.1| hypothetical protein S3263 [Shigella flexneri 2a str. 2457T]
 gi|56383792|gb|AAN44538.2| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301]
          Length = 413

 Score = 57.3 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 48/297 (16%), Positives = 98/297 (32%), Gaps = 58/297 (19%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDN--GVCEIT--LLGQNVNA 234
           + I  GC   C+FC +    G  I SRS   +++E   + D   G   +   L G   N 
Sbjct: 54  VNIMRGCFGGCSFCSITEHEGRIIQSRSEDSIINEIEAIRDTVPGFTGVISDLGGPTANM 113

Query: 235 WR----------------------GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
           +                          +D       +L     ++KG+ ++   +    D
Sbjct: 114 YMLRCKSPRAEQTCRRLSCVYPDICPHMDTNHEPTINLYRRARDLKGIKKILIASGVRYD 173

Query: 273 MSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRRH--TAYEYRQIIDRI-RSVRP 327
           ++    +   +L    +  YL +  +   +  L  M +    +   ++++ D   +    
Sbjct: 174 IAVEDPRYIKELATHHVGGYLKIAPEHTEEGPLSKMMKPGMGSYDRFKELFDTYSKQAGK 233

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGY--AQAFSFKYSPRLGT---------PGS 376
           +  +   FI   PG  D+D       + K  +   Q  +F  SP   +         P +
Sbjct: 234 EQYLIPYFISAHPGTRDEDMVNLALWLKKHRFRLDQVQNFYPSPLANSTTMYYTGKKPLA 293

Query: 377 NMLEQ-----VDENVKAERL-LCLQK--------KLREQQVSF-NDACVGQIIEVLI 418
            +  +     V +  K  RL   L +         +R+   +      +G   + L+
Sbjct: 294 KIGYKSEGVFVPKGDKQRRLHKALLRYHDPANWPLIRQALEAMGKKHLIGSRRDCLV 350


>gi|239832013|ref|ZP_04680342.1| lipoic acid synthetase [Ochrobactrum intermedium LMG 3301]
 gi|239824280|gb|EEQ95848.1| lipoic acid synthetase [Ochrobactrum intermedium LMG 3301]
          Length = 331

 Score = 57.3 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 44/276 (15%), Positives = 99/276 (35%), Gaps = 12/276 (4%)

Query: 93  SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVN-VVVGPQTYYRLPELLERARFGKRVVD 151
              + G + +V V   V Q + E    ++   + VV+    + R+   + R     R + 
Sbjct: 2   KMARIGRESMVTVLDLVNQGKRERHPEKAHRPDNVVLKKPDWIRVKAPVSRGYSETRDIV 61

Query: 152 TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVV 211
               +    E     + G   ++    F+ + E C + C FC V    GI  +   ++  
Sbjct: 62  RSNKLVTVCEEAGCPNIGECWEKKHATFMIMGEICTRACAFCNVS--TGIPTALDPNEPE 119

Query: 212 DEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPR 271
           + A+ +   G+  + +   +    R    DG    F++++ ++ E      +   T    
Sbjct: 120 NVAKAVKQMGLTHVVITSVD----RDDLADGGAQHFAEVIQAIREATPATTIEILTPDFL 175

Query: 272 DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAI 331
                L         +  +    +++   + LK +      +   +++ R++ + P I  
Sbjct: 176 RKEGALEIVVKARPDVFNH---NLETVPSKYLK-VRPGARYFHSIRLLQRVKELDPTIFT 231

Query: 332 SSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
            S  +VG  GE  ++    MD +           +Y
Sbjct: 232 KSGIMVGL-GEERNEILQLMDDLRSADVDFMTIGQY 266


>gi|162419089|ref|YP_001605236.1| coproporphyrinogen III oxidase [Yersinia pestis Angola]
 gi|162351904|gb|ABX85852.1| radical SAM domain/HemN domain protein [Yersinia pestis Angola]
          Length = 414

 Score = 57.3 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 34/197 (17%), Positives = 72/197 (36%), Gaps = 10/197 (5%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C   CTFC   + +    S S  +  D   + +        L G  ++A    G      
Sbjct: 40  CATHCTFCG--FYQNPLQSGSTERYTDYLLRELSMEADSPLLQGGPIHAIYFGGGTPSAL 97

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRD-----MSDCLIKAHGDLDVLMPYLHLPVQSGSD 300
           +   L   +S+++  + L        +       D  I A   L+       + VQ+ + 
Sbjct: 98  SAQQLHSIISQLRKSLPLAPDCEITVEGRIFNFDDERIDAC--LEAGANRFSIGVQTFNT 155

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
           RI + M R+    +  + +  + + R   A+  D + G P +T + ++  + +V ++   
Sbjct: 156 RIRQRMGRKADRDQAIRFLTDL-ATRDRAAVVCDLMFGLPHQTPEIWQEDLAIVRQLPLD 214

Query: 361 QAFSFKYSPRLGTPGSN 377
               +  +    TP + 
Sbjct: 215 GVDLYALNLLPTTPLAK 231


>gi|7466497|pir||E65088 hypothetical protein b3015 - Escherichia coli (strain K-12)
 gi|882545|gb|AAA69183.1| ORF_f413 [Escherichia coli str. K-12 substr. MG1655]
          Length = 413

 Score = 57.3 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 48/297 (16%), Positives = 98/297 (32%), Gaps = 58/297 (19%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDN--GVCEIT--LLGQNVNA 234
           + I  GC   C+FC +    G  I SRS   +++E   + D   G   +   L G   N 
Sbjct: 54  VNIMRGCFGGCSFCSITEHEGRIIQSRSEDSIINEIEAIRDTVPGFTGVISDLGGPTANM 113

Query: 235 WR----------------------GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
           +                          +D       +L     ++KG+ ++   +    D
Sbjct: 114 YMLRCKSPRAEQTCRRLSCVYPDICPHMDTNHEPTINLYRRARDLKGIKKILIASGVRYD 173

Query: 273 MSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRRH--TAYEYRQIIDRI-RSVRP 327
           ++    +   +L    +  YL +  +   +  L  M +    +   ++++ D   +    
Sbjct: 174 IAVEDPRYIKELATHHVGGYLKIAPEHTEEGPLSKMMKPGMGSYDRFKELFDTYSKQAGK 233

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGY--AQAFSFKYSPRLGT---------PGS 376
           +  +   FI   PG  D+D       + K  +   Q  +F  SP   +         P +
Sbjct: 234 EQYLIPYFISAHPGTRDEDMVNLALWLKKHRFRLDQVQNFYPSPLANSTTMYYTGKNPLA 293

Query: 377 NMLEQ-----VDENVKAERL-LCLQK--------KLREQQVSF-NDACVGQIIEVLI 418
            +  +     V +  K  RL   L +         +R+   +      +G   + L+
Sbjct: 294 KIGYKSEDVFVPKGDKQRRLHKALLRYHDPANWPLIRQALEAMGKKHLIGSRRDCLV 350


>gi|109897874|ref|YP_661129.1| lipoyl synthase [Pseudoalteromonas atlantica T6c]
 gi|123171414|sp|Q15VL3|LIPA_PSEA6 RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|109700155|gb|ABG40075.1| lipoic acid synthetase [Pseudoalteromonas atlantica T6c]
          Length = 320

 Score = 57.3 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 41/261 (15%), Positives = 86/261 (32%), Gaps = 19/261 (7%)

Query: 115 EEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDY--------SVEDKFERLSIV 166
           +E ++  PI  +        R PE + + R  +     D+        ++    E  S  
Sbjct: 15  DEKVKHIPITIMPTEKAEMLRKPEWI-KIRLPRTTDRIDHIKKTLRKNNLHSVCEEASCP 73

Query: 167 DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEIT 226
           +       G   F+ + + C + C FC V    G  +  S  + V  A+ + +  +  + 
Sbjct: 74  NLAECFNHGTATFMILGDICTRRCPFCDV--AHGKPLPPSAEEPVKLAKTIAEMQLKYVV 131

Query: 227 LLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV 286
           +   +    R    DG    F D + ++ E     ++        D    + KA   L  
Sbjct: 132 ITSVD----RDDLRDGGAQHFVDCINAIREHSPTTKIEVLVP---DFRGRMDKALEILKN 184

Query: 287 LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDD 346
            +P +         R+ +             ++ + +   PDI   S  ++G  GE  ++
Sbjct: 185 GVPDVFNHNLETIPRLYRECRPGANYQWSLDLLKKFKEQHPDIPTKSGLMMGM-GENKEE 243

Query: 347 FRATMDLVDKIGYAQAFSFKY 367
               +  +           +Y
Sbjct: 244 IAEVLKDLRAHNVEMLTLGQY 264


>gi|22124461|ref|NP_667884.1| coproporphyrinogen III oxidase [Yersinia pestis KIM 10]
 gi|51594699|ref|YP_068890.1| coproporphyrinogen III oxidase [Yersinia pseudotuberculosis IP
           32953]
 gi|108809985|ref|YP_653901.1| coproporphyrinogen III oxidase [Yersinia pestis Antiqua]
 gi|108813540|ref|YP_649307.1| coproporphyrinogen III oxidase [Yersinia pestis Nepal516]
 gi|145600930|ref|YP_001165006.1| coproporphyrinogen III oxidase [Yersinia pestis Pestoides F]
 gi|150260665|ref|ZP_01917393.1| putative coproporphyrinogen III oxidase [Yersinia pestis CA88-4125]
 gi|165926696|ref|ZP_02222528.1| radical SAM domain/HemN domain protein [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165936465|ref|ZP_02225033.1| radical SAM domain/HemN domain protein [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166010462|ref|ZP_02231360.1| radical SAM domain/HemN domain protein [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166213879|ref|ZP_02239914.1| radical SAM domain/HemN domain protein [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|167402200|ref|ZP_02307673.1| radical SAM domain/HemN domain protein [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167419408|ref|ZP_02311161.1| radical SAM domain/HemN domain protein [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167426180|ref|ZP_02317933.1| radical SAM domain/HemN domain protein [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|167467579|ref|ZP_02332283.1| coproporphyrinogen III oxidase [Yersinia pestis FV-1]
 gi|170026098|ref|YP_001722603.1| coproporphyrinogen III oxidase [Yersinia pseudotuberculosis YPIII]
 gi|218927493|ref|YP_002345368.1| coproporphyrinogen III oxidase [Yersinia pestis CO92]
 gi|229836544|ref|ZP_04456710.1| putative coproporphyrinogen III oxidase [Yersinia pestis Pestoides
           A]
 gi|229840152|ref|ZP_04460311.1| putative coproporphyrinogen III oxidase [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229842233|ref|ZP_04462388.1| putative coproporphyrinogen III oxidase [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229904028|ref|ZP_04519141.1| putative coproporphyrinogen III oxidase [Yersinia pestis Nepal516]
 gi|270488987|ref|ZP_06206061.1| radical SAM domain protein [Yersinia pestis KIM D27]
 gi|294502357|ref|YP_003566419.1| coproporphyrinogen III oxidase [Yersinia pestis Z176003]
 gi|21957250|gb|AAM84135.1|AE013656_3 hypothetical [Yersinia pestis KIM 10]
 gi|51587981|emb|CAH19584.1| putative coproporphyrinogen III oxidase [Yersinia
           pseudotuberculosis IP 32953]
 gi|108777188|gb|ABG19707.1| coproporphyrinogen III oxidase, anaerobic [Yersinia pestis
           Nepal516]
 gi|108781898|gb|ABG15956.1| coproporphyrinogen III oxidase, anaerobic [Yersinia pestis Antiqua]
 gi|115346104|emb|CAL18972.1| putative coproporphyrinogen III oxidase [Yersinia pestis CO92]
 gi|145212626|gb|ABP42033.1| coproporphyrinogen III oxidase, anaerobic [Yersinia pestis
           Pestoides F]
 gi|149290073|gb|EDM40150.1| putative coproporphyrinogen III oxidase [Yersinia pestis CA88-4125]
 gi|165915581|gb|EDR34190.1| radical SAM domain/HemN domain protein [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165921319|gb|EDR38543.1| radical SAM domain/HemN domain protein [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165990552|gb|EDR42853.1| radical SAM domain/HemN domain protein [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166204854|gb|EDR49334.1| radical SAM domain/HemN domain protein [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|166963402|gb|EDR59423.1| radical SAM domain/HemN domain protein [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167048381|gb|EDR59789.1| radical SAM domain/HemN domain protein [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167054891|gb|EDR64693.1| radical SAM domain/HemN domain protein [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|169752632|gb|ACA70150.1| Coproporphyrinogen dehydrogenase [Yersinia pseudotuberculosis
           YPIII]
 gi|229679798|gb|EEO75901.1| putative coproporphyrinogen III oxidase [Yersinia pestis Nepal516]
 gi|229690543|gb|EEO82597.1| putative coproporphyrinogen III oxidase [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229696518|gb|EEO86565.1| putative coproporphyrinogen III oxidase [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229706228|gb|EEO92236.1| putative coproporphyrinogen III oxidase [Yersinia pestis Pestoides
           A]
 gi|262360439|gb|ACY57160.1| coproporphyrinogen III oxidase [Yersinia pestis D106004]
 gi|262364387|gb|ACY60944.1| coproporphyrinogen III oxidase [Yersinia pestis D182038]
 gi|270337491|gb|EFA48268.1| radical SAM domain protein [Yersinia pestis KIM D27]
 gi|294352816|gb|ADE63157.1| coproporphyrinogen III oxidase [Yersinia pestis Z176003]
 gi|320013850|gb|ADV97421.1| putative coproporphyrinogen III oxidase [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 437

 Score = 57.3 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 34/197 (17%), Positives = 72/197 (36%), Gaps = 10/197 (5%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C   CTFC   + +    S S  +  D   + +        L G  ++A    G      
Sbjct: 63  CATHCTFCG--FYQNPLQSGSTERYTDYLLRELSMEADSPLLQGGPIHAIYFGGGTPSAL 120

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRD-----MSDCLIKAHGDLDVLMPYLHLPVQSGSD 300
           +   L   +S+++  + L        +       D  I A   L+       + VQ+ + 
Sbjct: 121 SAQQLHSIISQLRKSLPLAPDCEITVEGRIFNFDDERIDAC--LEAGANRFSIGVQTFNT 178

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
           RI + M R+    +  + +  + + R   A+  D + G P +T + ++  + +V ++   
Sbjct: 179 RIRQRMGRKADRDQAIRFLTDL-ATRDRAAVVCDLMFGLPHQTPEIWQEDLAIVRQLPLD 237

Query: 361 QAFSFKYSPRLGTPGSN 377
               +  +    TP + 
Sbjct: 238 GVDLYALNLLPTTPLAK 254


>gi|322613571|gb|EFY10512.1| hypothetical protein SEEM315_07575 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322621163|gb|EFY18021.1| hypothetical protein SEEM971_20299 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322624226|gb|EFY21060.1| hypothetical protein SEEM973_20415 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322633153|gb|EFY29895.1| hypothetical protein SEEM201_11965 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322636269|gb|EFY32977.1| hypothetical protein SEEM202_14103 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322639364|gb|EFY36054.1| hypothetical protein SEEM954_09795 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322647462|gb|EFY43951.1| hypothetical protein SEEM054_10037 [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322648646|gb|EFY45093.1| hypothetical protein SEEM675_04026 [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322653698|gb|EFY50024.1| hypothetical protein SEEM965_21671 [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322657806|gb|EFY54074.1| hypothetical protein SEEM19N_17796 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322663907|gb|EFY60106.1| hypothetical protein SEEM801_04086 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322669080|gb|EFY65231.1| hypothetical protein SEEM507_10481 [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322672925|gb|EFY69032.1| hypothetical protein SEEM877_00295 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322678084|gb|EFY74147.1| hypothetical protein SEEM867_02517 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322681260|gb|EFY77293.1| hypothetical protein SEEM180_21009 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322687809|gb|EFY83776.1| hypothetical protein SEEM600_15371 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323195621|gb|EFZ80798.1| hypothetical protein SEEM581_10635 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323199697|gb|EFZ84787.1| hypothetical protein SEEM501_16650 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323202554|gb|EFZ87594.1| hypothetical protein SEEM460_17785 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323207957|gb|EFZ92903.1| hypothetical protein SEEM020_18845 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323212490|gb|EFZ97307.1| hypothetical protein SEEM6152_09698 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323215027|gb|EFZ99775.1| hypothetical protein SEEM0077_03704 [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323222757|gb|EGA07122.1| hypothetical protein SEEM0047_09960 [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323224161|gb|EGA08454.1| hypothetical protein SEEM0055_22500 [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323230485|gb|EGA14603.1| hypothetical protein SEEM0052_19504 [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323235163|gb|EGA19249.1| hypothetical protein SEEM3312_06483 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323239203|gb|EGA23253.1| hypothetical protein SEEM5258_06365 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323244439|gb|EGA28445.1| hypothetical protein SEEM1156_00842 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323247055|gb|EGA31021.1| hypothetical protein SEEM9199_20905 [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323253463|gb|EGA37292.1| hypothetical protein SEEM8282_10331 [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323256231|gb|EGA39967.1| hypothetical protein SEEM8283_11551 [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323262594|gb|EGA46150.1| hypothetical protein SEEM8284_02491 [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323267311|gb|EGA50795.1| hypothetical protein SEEM8285_21042 [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323269286|gb|EGA52741.1| hypothetical protein SEEM8287_11367 [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
          Length = 723

 Score = 57.3 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 52/297 (17%), Positives = 100/297 (33%), Gaps = 58/297 (19%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDN--GVCEIT--LLGQNVNA 234
           + I  GC   C+FC +    G  I SRS   +++E   + D   G   +   L G   N 
Sbjct: 380 INIMRGCFGGCSFCSITEHEGRIIQSRSEDSIINEIEAIRDTVPGFTGVISDLGGPTANM 439

Query: 235 WR----------------------GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
           +                          +D +     +L     E+KG+ ++   +    D
Sbjct: 440 YMLRCKSPRAEQTCRRLSCVYPDICPHMDTDHTPTINLYRRARELKGIKKILIASGVRYD 499

Query: 273 MSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRRH--TAYEYRQIIDRI-RSVRP 327
           ++    +   +L    +  YL +  +   +  L  M +    +   ++++ D   +    
Sbjct: 500 IAVEDPRYIKELASHHVGGYLKIAPEHTEEGPLSKMMKPGMGSYDRFKELFDLYSKQAGK 559

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGY--AQAFSFKYSPR-----LGTPGSNMLE 380
           +  +   FI   PG  D+D       + +  +   Q  +F  SP      +   G N L 
Sbjct: 560 EQYLIPYFISAHPGTRDEDMVNLALWLKRHRFRLDQVQNFYPSPLANSTTMYYTGKNPLG 619

Query: 381 QV---DENV---KAERLLCLQKKL-------------REQQVSFNDACVGQIIEVLI 418
           ++    E+V   K +R   L K L             +  +       +G   E L+
Sbjct: 620 KIGYKSEDVVVPKGDRQRRLHKALLRYHDPANWPLIRQALEAMGKKHLIGGRRECLV 676


>gi|313649727|gb|EFS14151.1| lipoic acid synthetase [Shigella flexneri 2a str. 2457T]
 gi|327254312|gb|EGE65934.1| lipoic acid synthetase [Escherichia coli STEC_7v]
 gi|333007461|gb|EGK26941.1| lipoic acid synthetase [Shigella flexneri VA-6]
          Length = 315

 Score = 57.3 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 32/183 (17%), Positives = 68/183 (37%), Gaps = 12/183 (6%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V    G  ++   ++ V  A+ + D  +  + +   +    R    DG   
Sbjct: 88  CTRRCPFCDV--AHGRPVAPDANEPVKLAQTIADMALRYVVITSVD----RDDLRDGGAQ 141

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAH-GDLDVLMPYLHLPVQSGSDRILK 304
            F+D + ++ E    +++       R   D  +         +  +    V     RI +
Sbjct: 142 HFADCITAIREKSPQIKIETLVPDFRGRMDRALDILTATPPDVFNHNLENV----PRIYR 197

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
            +          ++++R +   P+I   S  +VG  GET+++    M  + + G      
Sbjct: 198 QVRPGADYNWSLKLLERFKEAHPEIPTKSGLMVGL-GETNEEIIEVMRDLRRHGVTMLTL 256

Query: 365 FKY 367
            +Y
Sbjct: 257 GQY 259


>gi|218549795|ref|YP_002383586.1| lipoyl synthase [Escherichia fergusonii ATCC 35469]
 gi|226737640|sp|B7LLI3|LIPA_ESCF3 RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|218357336|emb|CAQ89973.1| lipoate synthase [Escherichia fergusonii ATCC 35469]
 gi|324114751|gb|EGC08719.1| lipoyl synthase [Escherichia fergusonii B253]
 gi|325498191|gb|EGC96050.1| lipoyl synthase [Escherichia fergusonii ECD227]
          Length = 321

 Score = 57.3 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 44/258 (17%), Positives = 90/258 (34%), Gaps = 19/258 (7%)

Query: 118 LRRSPIVNVVVGPQTYYRLPELLERAR-------FGKRVVDTDYSVEDKFERLSIVDGGY 170
           +   P+ NVV   +   R PE ++           G +       +    E  S  +   
Sbjct: 19  MALIPVKNVVTEREALLRKPEWMKIKLPADSTRIQGIKAAMRKNGLHSVCEEASCPNLAE 78

Query: 171 NRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQ 230
               G   F+ +   C + C FC V    G  ++   ++ V  A+ + D  +  + +   
Sbjct: 79  CFNHGTATFMILGAICTRRCPFCDV--AHGRPVAPDANEPVKLAQTIADMALRYVVITSV 136

Query: 231 NVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAH-GDLDVLMP 289
           +    R    DG    F+D + ++ E    +++       R   D  +         +  
Sbjct: 137 D----RDDLRDGGAQHFADCITAIREKSPSIKIETLVPDFRGRMDRALDILTATPPDVFN 192

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +    V     RI + +          ++++R +   P+I   S  +VG  GET+++   
Sbjct: 193 HNLENV----PRIYRQVRPGADYNWSLKLLERFKEAHPEIPTKSGLMVGL-GETNEEIIE 247

Query: 350 TMDLVDKIGYAQAFSFKY 367
            M  + + G       +Y
Sbjct: 248 VMRDLRRHGVTMLTLGQY 265


>gi|29143430|ref|NP_806772.1| hypothetical protein t3088 [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|204928088|ref|ZP_03219288.1| radical SAM N- family protein [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|213424357|ref|ZP_03357181.1| hypothetical protein SentesTyphi_01115 [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213647432|ref|ZP_03377485.1| hypothetical protein SentesTy_09140 [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
 gi|47606278|sp|Q83SW5|YGIQ_SALTI RecName: Full=UPF0313 protein ygiQ
 gi|29139064|gb|AAO70632.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|204322410|gb|EDZ07607.1| radical SAM N- family protein [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
          Length = 723

 Score = 57.3 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 52/297 (17%), Positives = 100/297 (33%), Gaps = 58/297 (19%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDN--GVCEIT--LLGQNVNA 234
           + I  GC   C+FC +    G  I SRS   +++E   + D   G   +   L G   N 
Sbjct: 380 INIMRGCFGGCSFCSITEHEGRIIQSRSEDSIINEIEAIRDTVPGFTGVISDLGGPTANM 439

Query: 235 WR----------------------GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
           +                          +D +     +L     E+KG+ ++   +    D
Sbjct: 440 YMLRCKSPRAEQTCRRLSCVYPDICPHMDTDHTPTINLYRRARELKGIKKILIASGVRYD 499

Query: 273 MSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRRH--TAYEYRQIIDRI-RSVRP 327
           ++    +   +L    +  YL +  +   +  L  M +    +   ++++ D   +    
Sbjct: 500 IAVEDPRYIKELASHHVGGYLKIAPEHTEEGPLSKMMKPGMGSYDRFKELFDLYSKQAGK 559

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGY--AQAFSFKYSPR-----LGTPGSNMLE 380
           +  +   FI   PG  D+D       + +  +   Q  +F  SP      +   G N L 
Sbjct: 560 EQYLIPYFISAHPGTRDEDMVNLALWLKRHRFRLDQVQNFYPSPLANSTTMYYTGKNPLG 619

Query: 381 QV---DENV---KAERLLCLQKKL-------------REQQVSFNDACVGQIIEVLI 418
           ++    E+V   K +R   L K L             +  +       +G   E L+
Sbjct: 620 KIGYKSEDVVVPKGDRQRRLHKALLRYHDPANWPLIRQALEAMGKKHLIGGRRECLV 676


>gi|304320168|ref|YP_003853811.1| coproporphyrinogen III oxidase [Parvularcula bermudensis HTCC2503]
 gi|303299071|gb|ADM08670.1| coproporphyrinogen III oxidase [Parvularcula bermudensis HTCC2503]
          Length = 376

 Score = 57.3 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 37/194 (19%), Positives = 72/194 (37%), Gaps = 15/194 (7%)

Query: 186 CDKFCTFCVVPYTRGI------EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
           CD+ C +C     RG        IS  L+ + D A +     +  +   G       G  
Sbjct: 14  CDRICPYCDFVVARGRDVDEKAWISAFLADLDDSAARWGRRQIVSVYFGG-------GTP 66

Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
                   + LL  +++   L      T      +    +      + +  + + VQS  
Sbjct: 67  SLLSPHGLNRLLGGIADRYDLASSAEVTIEVNPTALEAQRLRAYRALGINRVSIGVQSFD 126

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
           D  L+ + R H     R +ID+  ++     +++DFI   PGET +D+   +  +  +  
Sbjct: 127 DEHLRFLGRNHDGGTARGVIDQAAALFD--RVTADFIYALPGETIEDWTRRLRAILSLPV 184

Query: 360 AQAFSFKYSPRLGT 373
           +    ++ +   GT
Sbjct: 185 SHLSLYQLTIEQGT 198


>gi|300715821|ref|YP_003740624.1| Lipoyl synthase [Erwinia billingiae Eb661]
 gi|299061657|emb|CAX58773.1| Lipoyl synthase [Erwinia billingiae Eb661]
          Length = 321

 Score = 57.3 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 30/182 (16%), Positives = 67/182 (36%), Gaps = 10/182 (5%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V    G  ++   ++ +  A+ + D G+  + +   +    R    DG   
Sbjct: 94  CTRRCPFCDV--AHGRPVAPDQNEPLKLAQTIADMGLRYVVITSVD----RDDLRDGGAQ 147

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
            F+D + ++      +++       R   D  ++         P +         R+ + 
Sbjct: 148 HFADCITAIRAKNPTIKIETLVPDFRGRMDRALEILTATP---PDVFNHNMENVPRVYRQ 204

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           +          ++++R +   PD+   S  +VG  GET+ +    M  + + G       
Sbjct: 205 VRPGANYDWSLKLLERFKEAHPDVPTKSGLMVGL-GETNAEIVEVMRDLRRHGVTMLTLG 263

Query: 366 KY 367
           +Y
Sbjct: 264 QY 265


>gi|291567028|dbj|BAI89300.1| radical SAM domain protein [Arthrospira platensis NIES-39]
          Length = 524

 Score = 57.3 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 54/325 (16%), Positives = 104/325 (32%), Gaps = 34/325 (10%)

Query: 58  SMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEI 117
             + A+L++L+   +++        FL +I+  K           V V G    A   E 
Sbjct: 62  EWEWAELVILSAMIVQKN------DFLAQIQEAKKRGKM------VAVGGPFPTALPHEA 109

Query: 118 LRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFE--RLSIVDGGYNRKRG 175
            +     + +V  +    LP  +     G+       +  +K +     I       K+ 
Sbjct: 110 EKM--GADFLVLDEGEITLPMFVAALERGETQGILRAANGEKPDVTNTPIPRFDLLEKQA 167

Query: 176 VTAF-LTIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVCEITLLGQNVN 233
                L    GC   C FC +    G +  +++  Q+V E  +L++ G  +   L  +  
Sbjct: 168 YDMMALQFSRGCPFQCEFCDIIVLYGRKPRTKAPEQLVAELDRLLELGFTQTIFLVDD-- 225

Query: 234 AWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM----SDCLIKAHGDLDVLMP 289
                   G K     LL  L E        +       +       L+    + +    
Sbjct: 226 -----NFIGNKRNVKLLLPVLKEWMEKNNYPFRMMTEASVDLAQDQELMNMMVEANFYA- 279

Query: 290 YLHLPVQSGSDRILKSMNRR-HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFR 348
            + L +++  +  L    +  +T       +D I   R  + + + FI+GF GE      
Sbjct: 280 -VFLGIETPDEASLALTKKFQNTRNSLVDAVDNIT--RSGLRVMAGFIIGFDGEKSGAGD 336

Query: 349 ATMDLVDKIGYAQAFSFKYSPRLGT 373
             +  V+      A          T
Sbjct: 337 RIIQFVETTAIPVAMFSMLQVLPNT 361


>gi|254514596|ref|ZP_05126657.1| lipoic acid synthetase [gamma proteobacterium NOR5-3]
 gi|219676839|gb|EED33204.1| lipoic acid synthetase [gamma proteobacterium NOR5-3]
          Length = 329

 Score = 57.3 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 29/224 (12%), Positives = 77/224 (34%), Gaps = 17/224 (7%)

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
           + +  ++ +    E     +       G    + + + C + C FC V            
Sbjct: 61  KSIVHEHRLATVCEEAKCPNMSECWSAGTATIMLMGDVCTRACRFCAVNTGNPKGW-LDA 119

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
            +  + AR +   G+  + L   N    R    DG    ++  +  + E+          
Sbjct: 120 EEADNTARSVQLMGLKYVVLTSVN----RDDLPDGGAGHYAACVRRVKEVNA-------Q 168

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR----RHTAYEYRQIIDRIR 323
           +    ++   +    D++ ++           + + +  +     R    +  +++   +
Sbjct: 169 TAVEALTPDFLGNLADVETVVDSGIEVFAQNVETVRRLTHPVRDPRAGYEQTLEVLAHAK 228

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           + RPD+   +  ++G  GET+D+ R  ++ + K         +Y
Sbjct: 229 AHRPDVLTKTSLMLGL-GETEDEIREALEDLRKARVDIVTFGQY 271


>gi|168242993|ref|ZP_02667925.1| radical SAM N- family protein [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|194449292|ref|YP_002047164.1| hypothetical protein SeHA_C3418 [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194407596|gb|ACF67815.1| protein YgiQ [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|205337884|gb|EDZ24648.1| radical SAM N- family protein [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
          Length = 723

 Score = 57.3 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 52/297 (17%), Positives = 100/297 (33%), Gaps = 58/297 (19%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDN--GVCEIT--LLGQNVNA 234
           + I  GC   C+FC +    G  I SRS   +++E   + D   G   +   L G   N 
Sbjct: 380 INIMRGCFGGCSFCSITEHEGRIIQSRSEDSIINEIEAIRDTVPGFTGVISDLGGPTANM 439

Query: 235 WR----------------------GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
           +                          +D +     +L     E+KG+ ++   +    D
Sbjct: 440 YMLRCKSPRAEQTCRRLSCVYPDICPHMDTDHTPTINLYRRARELKGIKKILIASGVRYD 499

Query: 273 MSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRRH--TAYEYRQIIDRI-RSVRP 327
           ++    +   +L    +  YL +  +   +  L  M +    +   ++++ D   +    
Sbjct: 500 IAVEDPRYIKELASHHVGGYLKIAPEHTEEGPLSKMMKPGMGSYDRFKELFDLYSKQAGK 559

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGY--AQAFSFKYSPR-----LGTPGSNMLE 380
           +  +   FI   PG  D+D       + +  +   Q  +F  SP      +   G N L 
Sbjct: 560 EQYLIPYFISAHPGTRDEDMVNLALWLKRHRFRLDQVQNFYPSPLANSTTMYYTGKNPLG 619

Query: 381 QV---DENV---KAERLLCLQKKL-------------REQQVSFNDACVGQIIEVLI 418
           ++    E+V   K +R   L K L             +  +       +G   E L+
Sbjct: 620 KIGYKSEDVVVPKGDRQRRLHKALLRYHDPANWPLIRQALEAMGKKHLIGGRRECLV 676


>gi|113971205|ref|YP_734998.1| putative radical SAM protein [Shewanella sp. MR-4]
 gi|113885889|gb|ABI39941.1| conserved hypothetical radical SAM protein [Shewanella sp. MR-4]
          Length = 309

 Score = 57.3 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 50/241 (20%), Positives = 82/241 (34%), Gaps = 40/241 (16%)

Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW--------RGKG 239
             CTFC V        S   ++ +    + +  G          +NA             
Sbjct: 43  GGCTFCNV-----ASFSYQQAETL-SISEQLRQGKARYKEAKPKLNADKFIAYFQAYTST 96

Query: 240 LDGEKCTFSDLLYSL--SEIKGLVRLRYTTSHPRDMSDCLIKAHGDL--DVLMPYLHLPV 295
            D  +   +    ++  SEI GL       + P  + D ++          +  +L L +
Sbjct: 97  YDEYQMLMAKYDEAVKDSEIVGL----CVGTRPDCVPDNVLDLLASYQQKGVDVWLELGL 152

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
           Q+ +D  L  +NR H    Y   + R RS    + + +  I+G PGET  D+ AT+  V 
Sbjct: 153 QTANDSTLHKINRGHDFACYCDTVARARSR--GVKVCTHLILGLPGETHLDYMATLQAVL 210

Query: 356 KIGYAQAFSFKYSPRLG-TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQII 414
             G             G T             +A RL  L        +    ACVG+++
Sbjct: 211 AQGVDGLKLHPLHVVEGSTMAKAW--------RAGRLPLL-------SIEEYAACVGELV 255

Query: 415 E 415
            
Sbjct: 256 R 256


>gi|119775727|ref|YP_928467.1| lipoyl synthase [Shewanella amazonensis SB2B]
 gi|166230436|sp|A1S8U1|LIPA_SHEAM RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|119768227|gb|ABM00798.1| lipoic acid synthetase [Shewanella amazonensis SB2B]
          Length = 321

 Score = 57.3 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 27/184 (14%), Positives = 57/184 (30%), Gaps = 14/184 (7%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V    G  +     + V  A+ + D  +  + +   +    R    DG   
Sbjct: 94  CTRRCPFCDV--AHGRPLKPDADEPVKLAKTIRDMKLKYVVITSVD----RDDLRDGGAQ 147

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLD--VLMPYLHLPVQSGSDRIL 303
            F+D +  +  +   +++       R   D  +         V    L            
Sbjct: 148 HFADCIREIRALNPHIQIETLVPDFRGRIDVALDILSTNPPDVFNHNLETAPAHY----- 202

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           +             ++ R +   P+I   S  ++G  GET+++    +  +         
Sbjct: 203 RKARPGANYQWSLDLLKRFKERHPNIPTKSGLMMGL-GETNEEIIQVLKDLRAHDVNMLT 261

Query: 364 SFKY 367
             +Y
Sbjct: 262 LGQY 265


>gi|311064231|ref|YP_003970956.1| coproporphyrinogen oxidase (NAD) [Bifidobacterium bifidum PRL2010]
 gi|310866550|gb|ADP35919.1| HemN Coproporphyrinogen oxidase (NAD) [Bifidobacterium bifidum
           PRL2010]
          Length = 420

 Score = 57.3 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 44/241 (18%), Positives = 84/241 (34%), Gaps = 27/241 (11%)

Query: 186 CDKFCTFC------VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
           C + C +C            G       + VV E R + D  +      G          
Sbjct: 4   CMRRCGYCDFNTYTATDMGAGASRGNYANMVVREMRLVRDWQLVH----GIEEPPVSTVF 59

Query: 240 LDGEKCTF---SDLLYSLSEIKGLVRL-----RYTTSHPRDMSDCLIKAHGDLDVLMPYL 291
             G   T     DL+  L  ++GL  +       T ++P  + +  I A  +       +
Sbjct: 60  FGGGTPTILPARDLVMMLDAVRGLWGIEPEAEITTEANPDTVDERYIGALAEGG--FTRV 117

Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351
              +QS    +LK+++R HT       +    + R  +  S D I G PGE+ DD+R ++
Sbjct: 118 SFGMQSAVPHVLKNLDRTHTPANVEAGVRA--ADRAGLRSSVDLIYGAPGESLDDWRDSV 175

Query: 352 DLVDKIGYAQAFSFKYSPRLGTP-----GSNMLEQVDENVKAERLLCLQKKLREQQVSFN 406
                +G     ++  +    T       +  L + D++ +A +            + + 
Sbjct: 176 RTAVDLGVNHVSAYALTVEPTTKMGRQIAAGTLPKPDDDDEAAKYEIADDLFAAAGLEWY 235

Query: 407 D 407
           +
Sbjct: 236 E 236


>gi|15829920|ref|NP_308693.1| lipoyl synthase [Escherichia coli O157:H7 str. Sakai]
 gi|16128611|ref|NP_415161.1| lipoate synthase [Escherichia coli str. K-12 substr. MG1655]
 gi|24112072|ref|NP_706582.1| lipoyl synthase [Shigella flexneri 2a str. 301]
 gi|26246608|ref|NP_752648.1| lipoyl synthase [Escherichia coli CFT073]
 gi|30062183|ref|NP_836354.1| lipoyl synthase [Shigella flexneri 2a str. 2457T]
 gi|74311164|ref|YP_309583.1| lipoyl synthase [Shigella sonnei Ss046]
 gi|82543074|ref|YP_407021.1| lipoyl synthase [Shigella boydii Sb227]
 gi|82775897|ref|YP_402244.1| lipoyl synthase [Shigella dysenteriae Sd197]
 gi|89107497|ref|AP_001277.1| lipoate synthase [Escherichia coli str. K-12 substr. W3110]
 gi|91209676|ref|YP_539662.1| lipoyl synthase [Escherichia coli UTI89]
 gi|110640857|ref|YP_668585.1| lipoyl synthase [Escherichia coli 536]
 gi|117622844|ref|YP_851757.1| lipoyl synthase [Escherichia coli APEC O1]
 gi|157156344|ref|YP_001461794.1| lipoyl synthase [Escherichia coli E24377A]
 gi|157160123|ref|YP_001457441.1| lipoyl synthase [Escherichia coli HS]
 gi|168754730|ref|ZP_02779737.1| lipoic acid synthetase [Escherichia coli O157:H7 str. EC4401]
 gi|168770231|ref|ZP_02795238.1| lipoic acid synthetase [Escherichia coli O157:H7 str. EC4486]
 gi|168779119|ref|ZP_02804126.1| lipoic acid synthetase [Escherichia coli O157:H7 str. EC4076]
 gi|168786476|ref|ZP_02811483.1| lipoic acid synthetase [Escherichia coli O157:H7 str. EC869]
 gi|170021015|ref|YP_001725969.1| lipoyl synthase [Escherichia coli ATCC 8739]
 gi|170080207|ref|YP_001729527.1| lipoate synthase [Escherichia coli str. K-12 substr. DH10B]
 gi|170080308|ref|YP_001729628.1| lipoate synthase [Escherichia coli str. K-12 substr. DH10B]
 gi|170681300|ref|YP_001742744.1| lipoyl synthase [Escherichia coli SMS-3-5]
 gi|188493168|ref|ZP_03000438.1| lipoic acid synthetase [Escherichia coli 53638]
 gi|191167344|ref|ZP_03029160.1| lipoic acid synthetase [Escherichia coli B7A]
 gi|191172329|ref|ZP_03033871.1| lipoic acid synthetase [Escherichia coli F11]
 gi|193063458|ref|ZP_03044548.1| lipoic acid synthetase [Escherichia coli E22]
 gi|193069052|ref|ZP_03050010.1| lipoic acid synthetase [Escherichia coli E110019]
 gi|194427988|ref|ZP_03060533.1| lipoic acid synthetase [Escherichia coli B171]
 gi|194437446|ref|ZP_03069543.1| lipoic acid synthetase [Escherichia coli 101-1]
 gi|195936177|ref|ZP_03081559.1| lipoyl synthase [Escherichia coli O157:H7 str. EC4024]
 gi|208815279|ref|ZP_03256458.1| lipoic acid synthetase [Escherichia coli O157:H7 str. EC4045]
 gi|208823110|ref|ZP_03263428.1| lipoic acid synthetase [Escherichia coli O157:H7 str. EC4042]
 gi|209399163|ref|YP_002269263.1| lipoic acid synthetase [Escherichia coli O157:H7 str. EC4115]
 gi|209917886|ref|YP_002291970.1| lipoyl synthase [Escherichia coli SE11]
 gi|215485669|ref|YP_002328100.1| lipoyl synthase [Escherichia coli O127:H6 str. E2348/69]
 gi|217324391|ref|ZP_03440475.1| lipoic acid synthetase [Escherichia coli O157:H7 str. TW14588]
 gi|218553170|ref|YP_002386083.1| lipoyl synthase [Escherichia coli IAI1]
 gi|218557567|ref|YP_002390480.1| lipoyl synthase [Escherichia coli S88]
 gi|218688451|ref|YP_002396663.1| lipoyl synthase [Escherichia coli ED1a]
 gi|218694068|ref|YP_002401735.1| lipoyl synthase [Escherichia coli 55989]
 gi|218699000|ref|YP_002406629.1| lipoyl synthase [Escherichia coli IAI39]
 gi|218703961|ref|YP_002411480.1| lipoyl synthase [Escherichia coli UMN026]
 gi|227884393|ref|ZP_04002198.1| lipoyl synthase [Escherichia coli 83972]
 gi|237707400|ref|ZP_04537881.1| lipoyl synthase [Escherichia sp. 3_2_53FAA]
 gi|238899905|ref|YP_002925701.1| lipoate synthase [Escherichia coli BW2952]
 gi|253774386|ref|YP_003037217.1| lipoyl synthase [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|254160710|ref|YP_003043818.1| lipoyl synthase [Escherichia coli B str. REL606]
 gi|254791794|ref|YP_003076631.1| lipoyl synthase [Escherichia coli O157:H7 str. TW14359]
 gi|256020580|ref|ZP_05434445.1| lipoyl synthase [Shigella sp. D9]
 gi|256023761|ref|ZP_05437626.1| lipoyl synthase [Escherichia sp. 4_1_40B]
 gi|260842854|ref|YP_003220632.1| lipoate synthase [Escherichia coli O103:H2 str. 12009]
 gi|260853880|ref|YP_003227771.1| lipoate synthase [Escherichia coli O26:H11 str. 11368]
 gi|260866776|ref|YP_003233178.1| lipoate synthase [Escherichia coli O111:H- str. 11128]
 gi|261224095|ref|ZP_05938376.1| lipoate synthase [Escherichia coli O157:H7 str. FRIK2000]
 gi|261257789|ref|ZP_05950322.1| lipoate synthase [Escherichia coli O157:H7 str. FRIK966]
 gi|291281579|ref|YP_003498397.1| Lipoyl synthase [Escherichia coli O55:H7 str. CB9615]
 gi|293403890|ref|ZP_06647884.1| lipoyl synthase [Escherichia coli FVEC1412]
 gi|293408753|ref|ZP_06652592.1| lipoyl synthase [Escherichia coli B354]
 gi|293413924|ref|ZP_06656573.1| lipoyl synthase [Escherichia coli B185]
 gi|293418739|ref|ZP_06661174.1| lipoyl synthase [Escherichia coli B088]
 gi|298379666|ref|ZP_06989271.1| lipoyl synthase [Escherichia coli FVEC1302]
 gi|300817855|ref|ZP_07098069.1| lipoyl synthase [Escherichia coli MS 107-1]
 gi|300823058|ref|ZP_07103192.1| lipoyl synthase [Escherichia coli MS 119-7]
 gi|300901132|ref|ZP_07119240.1| lipoyl synthase [Escherichia coli MS 198-1]
 gi|300907802|ref|ZP_07125419.1| lipoyl synthase [Escherichia coli MS 84-1]
 gi|300920562|ref|ZP_07136986.1| lipoyl synthase [Escherichia coli MS 115-1]
 gi|300927274|ref|ZP_07143002.1| lipoyl synthase [Escherichia coli MS 182-1]
 gi|300939617|ref|ZP_07154271.1| lipoyl synthase [Escherichia coli MS 21-1]
 gi|300990082|ref|ZP_07179094.1| lipoyl synthase [Escherichia coli MS 45-1]
 gi|300996742|ref|ZP_07181529.1| lipoyl synthase [Escherichia coli MS 200-1]
 gi|301025243|ref|ZP_07188810.1| lipoyl synthase [Escherichia coli MS 69-1]
 gi|301028897|ref|ZP_07192068.1| lipoyl synthase [Escherichia coli MS 196-1]
 gi|301049822|ref|ZP_07196762.1| lipoyl synthase [Escherichia coli MS 185-1]
 gi|301302106|ref|ZP_07208239.1| lipoyl synthase [Escherichia coli MS 124-1]
 gi|301643961|ref|ZP_07243986.1| lipoyl synthase [Escherichia coli MS 146-1]
 gi|306812940|ref|ZP_07447133.1| lipoyl synthase [Escherichia coli NC101]
 gi|307137244|ref|ZP_07496600.1| lipoyl synthase [Escherichia coli H736]
 gi|307312656|ref|ZP_07592288.1| lipoic acid synthetase [Escherichia coli W]
 gi|309785941|ref|ZP_07680570.1| lipoic acid synthetase [Shigella dysenteriae 1617]
 gi|309795505|ref|ZP_07689922.1| lipoyl synthase [Escherichia coli MS 145-7]
 gi|312965074|ref|ZP_07779311.1| lipoic acid synthetase [Escherichia coli 2362-75]
 gi|312970708|ref|ZP_07784889.1| lipoic acid synthetase [Escherichia coli 1827-70]
 gi|331641130|ref|ZP_08342265.1| lipoyl synthase [Escherichia coli H736]
 gi|331645785|ref|ZP_08346888.1| lipoyl synthase [Escherichia coli M605]
 gi|331651636|ref|ZP_08352655.1| lipoyl synthase [Escherichia coli M718]
 gi|331656655|ref|ZP_08357617.1| lipoyl synthase [Escherichia coli TA206]
 gi|331661992|ref|ZP_08362915.1| lipoyl synthase [Escherichia coli TA143]
 gi|331666980|ref|ZP_08367854.1| lipoyl synthase [Escherichia coli TA271]
 gi|331672168|ref|ZP_08372960.1| lipoyl synthase [Escherichia coli TA280]
 gi|331676286|ref|ZP_08376998.1| lipoyl synthase [Escherichia coli H591]
 gi|331682051|ref|ZP_08382675.1| lipoyl synthase [Escherichia coli H299]
 gi|332281764|ref|ZP_08394177.1| lipoyl synthase [Shigella sp. D9]
 gi|46397470|sp|P60716|LIPA_ECOLI RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|46397471|sp|P60717|LIPA_ECOL6 RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|46397472|sp|P60718|LIPA_ECO57 RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|46397473|sp|P60719|LIPA_SHIFL RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|122958495|sp|Q0TK45|LIPA_ECOL5 RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|123266135|sp|Q1RET3|LIPA_ECOUT RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|123742174|sp|Q32IV2|LIPA_SHIDS RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|123755643|sp|Q324R5|LIPA_SHIBS RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|123773559|sp|Q3Z4G4|LIPA_SHISS RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|166230416|sp|A1A8Q3|LIPA_ECOK1 RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|166990680|sp|A7ZJ15|LIPA_ECO24 RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|166990681|sp|A7ZXQ4|LIPA_ECOHS RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|172045859|sp|Q0T6N8|LIPA_SHIF8 RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|189046601|sp|B1IYI0|LIPA_ECOLC RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|226737635|sp|B7MFQ1|LIPA_ECO45 RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|226737636|sp|B7NLY7|LIPA_ECO7I RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|226737637|sp|B7M5F5|LIPA_ECO8A RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|226737638|sp|B7N9N3|LIPA_ECOLU RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|226737639|sp|B1LKL9|LIPA_ECOSM RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|226781790|sp|B5YQH9|LIPA_ECO5E RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|226781791|sp|B6I137|LIPA_ECOSE RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|254809186|sp|B7UKR9|LIPA_ECO27 RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|254809187|sp|B7L9H2|LIPA_ECO55 RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|254809188|sp|B7MRR5|LIPA_ECO81 RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|259494931|sp|C4ZWB5|LIPA_ECOBW RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|26107007|gb|AAN79191.1|AE016757_95 Lipoic acid synthetase [Escherichia coli CFT073]
 gi|1651257|dbj|BAA35271.1| lipoate synthase [Escherichia coli str. K12 substr. W3110]
 gi|1778545|gb|AAB40828.1| lipoic acid synthetase [Escherichia coli]
 gi|1786846|gb|AAC73729.1| lipoate synthase [Escherichia coli str. K-12 substr. MG1655]
 gi|13360124|dbj|BAB34089.1| lipoate synthesis protein LipA [Escherichia coli O157:H7 str.
           Sakai]
 gi|24050899|gb|AAN42289.1| lipoate synthesis protein LipA [Shigella flexneri 2a str. 301]
 gi|30040428|gb|AAP16160.1| lipoate synthesis protein LipA [Shigella flexneri 2a str. 2457T]
 gi|73854641|gb|AAZ87348.1| LipA [Shigella sonnei Ss046]
 gi|81240045|gb|ABB60755.1| lipoate synthesis [Shigella dysenteriae Sd197]
 gi|81244485|gb|ABB65193.1| lipoate synthesis [Shigella boydii Sb227]
 gi|91071250|gb|ABE06131.1| lipoate synthesis protein [Escherichia coli UTI89]
 gi|110342449|gb|ABG68686.1| lipoic acid synthetase [Escherichia coli 536]
 gi|115511968|gb|ABJ00043.1| lipoyl synthase [Escherichia coli APEC O1]
 gi|157065803|gb|ABV05058.1| lipoic acid synthetase [Escherichia coli HS]
 gi|157078374|gb|ABV18082.1| lipoic acid synthetase [Escherichia coli E24377A]
 gi|169755943|gb|ACA78642.1| lipoic acid synthetase [Escherichia coli ATCC 8739]
 gi|169888042|gb|ACB01749.1| lipoate synthase [Escherichia coli str. K-12 substr. DH10B]
 gi|169888143|gb|ACB01850.1| lipoate synthase [Escherichia coli str. K-12 substr. DH10B]
 gi|170519018|gb|ACB17196.1| lipoic acid synthetase [Escherichia coli SMS-3-5]
 gi|188488367|gb|EDU63470.1| lipoic acid synthetase [Escherichia coli 53638]
 gi|189003094|gb|EDU72080.1| lipoic acid synthetase [Escherichia coli O157:H7 str. EC4076]
 gi|189358108|gb|EDU76527.1| lipoic acid synthetase [Escherichia coli O157:H7 str. EC4401]
 gi|189360846|gb|EDU79265.1| lipoic acid synthetase [Escherichia coli O157:H7 str. EC4486]
 gi|189373473|gb|EDU91889.1| lipoic acid synthetase [Escherichia coli O157:H7 str. EC869]
 gi|190902593|gb|EDV62326.1| lipoic acid synthetase [Escherichia coli B7A]
 gi|190907428|gb|EDV67025.1| lipoic acid synthetase [Escherichia coli F11]
 gi|192931042|gb|EDV83646.1| lipoic acid synthetase [Escherichia coli E22]
 gi|192957596|gb|EDV88041.1| lipoic acid synthetase [Escherichia coli E110019]
 gi|194413963|gb|EDX30240.1| lipoic acid synthetase [Escherichia coli B171]
 gi|194423615|gb|EDX39605.1| lipoic acid synthetase [Escherichia coli 101-1]
 gi|208731927|gb|EDZ80615.1| lipoic acid synthetase [Escherichia coli O157:H7 str. EC4045]
 gi|208737303|gb|EDZ84987.1| lipoic acid synthetase [Escherichia coli O157:H7 str. EC4042]
 gi|209160563|gb|ACI37996.1| lipoic acid synthetase [Escherichia coli O157:H7 str. EC4115]
 gi|209777188|gb|ACI86906.1| lipoate synthesis protein LipA [Escherichia coli]
 gi|209777190|gb|ACI86907.1| lipoate synthesis protein LipA [Escherichia coli]
 gi|209777192|gb|ACI86908.1| lipoate synthesis protein LipA [Escherichia coli]
 gi|209777194|gb|ACI86909.1| lipoate synthesis protein LipA [Escherichia coli]
 gi|209777196|gb|ACI86910.1| lipoate synthesis protein LipA [Escherichia coli]
 gi|209911145|dbj|BAG76219.1| lipoic acid synthase [Escherichia coli SE11]
 gi|215263741|emb|CAS08076.1| lipoate synthase [Escherichia coli O127:H6 str. E2348/69]
 gi|217320612|gb|EEC29036.1| lipoic acid synthetase [Escherichia coli O157:H7 str. TW14588]
 gi|218350800|emb|CAU96492.1| lipoate synthase [Escherichia coli 55989]
 gi|218359938|emb|CAQ97481.1| lipoate synthase [Escherichia coli IAI1]
 gi|218364336|emb|CAR02009.1| lipoate synthase [Escherichia coli S88]
 gi|218368986|emb|CAR16740.1| lipoate synthase [Escherichia coli IAI39]
 gi|218426015|emb|CAR06832.1| lipoate synthase [Escherichia coli ED1a]
 gi|218431058|emb|CAR11934.1| lipoate synthase [Escherichia coli UMN026]
 gi|222032388|emb|CAP75127.1| Lipoyl synthase [Escherichia coli LF82]
 gi|226898610|gb|EEH84869.1| lipoyl synthase [Escherichia sp. 3_2_53FAA]
 gi|227838479|gb|EEJ48945.1| lipoyl synthase [Escherichia coli 83972]
 gi|238861658|gb|ACR63656.1| lipoate synthase [Escherichia coli BW2952]
 gi|242376404|emb|CAQ31103.1| lipoate synthase monomer, subunit of lipoate synthase [Escherichia
           coli BL21(DE3)]
 gi|253325430|gb|ACT30032.1| lipoic acid synthetase [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|253972611|gb|ACT38282.1| lipoyl synthase [Escherichia coli B str. REL606]
 gi|253976805|gb|ACT42475.1| lipoyl synthase [Escherichia coli BL21(DE3)]
 gi|254591194|gb|ACT70555.1| lipoate synthase [Escherichia coli O157:H7 str. TW14359]
 gi|257752529|dbj|BAI24031.1| lipoate synthase [Escherichia coli O26:H11 str. 11368]
 gi|257758001|dbj|BAI29498.1| lipoate synthase [Escherichia coli O103:H2 str. 12009]
 gi|257763132|dbj|BAI34627.1| lipoate synthase [Escherichia coli O111:H- str. 11128]
 gi|260450205|gb|ACX40627.1| lipoic acid synthetase [Escherichia coli DH1]
 gi|281177777|dbj|BAI54107.1| lipoic acid synthase [Escherichia coli SE15]
 gi|281600036|gb|ADA73020.1| Lipoyl synthase [Shigella flexneri 2002017]
 gi|290761452|gb|ADD55413.1| Lipoyl synthase [Escherichia coli O55:H7 str. CB9615]
 gi|291325267|gb|EFE64682.1| lipoyl synthase [Escherichia coli B088]
 gi|291428476|gb|EFF01501.1| lipoyl synthase [Escherichia coli FVEC1412]
 gi|291433982|gb|EFF06955.1| lipoyl synthase [Escherichia coli B185]
 gi|291471931|gb|EFF14414.1| lipoyl synthase [Escherichia coli B354]
 gi|294492652|gb|ADE91408.1| lipoic acid synthetase [Escherichia coli IHE3034]
 gi|298279364|gb|EFI20872.1| lipoyl synthase [Escherichia coli FVEC1302]
 gi|299878130|gb|EFI86341.1| lipoyl synthase [Escherichia coli MS 196-1]
 gi|300298417|gb|EFJ54802.1| lipoyl synthase [Escherichia coli MS 185-1]
 gi|300304457|gb|EFJ58977.1| lipoyl synthase [Escherichia coli MS 200-1]
 gi|300355417|gb|EFJ71287.1| lipoyl synthase [Escherichia coli MS 198-1]
 gi|300396146|gb|EFJ79684.1| lipoyl synthase [Escherichia coli MS 69-1]
 gi|300400491|gb|EFJ84029.1| lipoyl synthase [Escherichia coli MS 84-1]
 gi|300407157|gb|EFJ90695.1| lipoyl synthase [Escherichia coli MS 45-1]
 gi|300412447|gb|EFJ95757.1| lipoyl synthase [Escherichia coli MS 115-1]
 gi|300416762|gb|EFK00073.1| lipoyl synthase [Escherichia coli MS 182-1]
 gi|300455515|gb|EFK19008.1| lipoyl synthase [Escherichia coli MS 21-1]
 gi|300524407|gb|EFK45476.1| lipoyl synthase [Escherichia coli MS 119-7]
 gi|300529552|gb|EFK50614.1| lipoyl synthase [Escherichia coli MS 107-1]
 gi|300842658|gb|EFK70418.1| lipoyl synthase [Escherichia coli MS 124-1]
 gi|301077680|gb|EFK92486.1| lipoyl synthase [Escherichia coli MS 146-1]
 gi|305853703|gb|EFM54142.1| lipoyl synthase [Escherichia coli NC101]
 gi|306907358|gb|EFN37863.1| lipoic acid synthetase [Escherichia coli W]
 gi|307552498|gb|ADN45273.1| lipoyl synthase LipA [Escherichia coli ABU 83972]
 gi|307627934|gb|ADN72238.1| lipoyl synthase [Escherichia coli UM146]
 gi|308120880|gb|EFO58142.1| lipoyl synthase [Escherichia coli MS 145-7]
 gi|308926052|gb|EFP71530.1| lipoic acid synthetase [Shigella dysenteriae 1617]
 gi|309700866|emb|CBJ00163.1| lipoic acid synthetase [Escherichia coli ETEC H10407]
 gi|310337357|gb|EFQ02495.1| lipoic acid synthetase [Escherichia coli 1827-70]
 gi|312290165|gb|EFR18048.1| lipoic acid synthetase [Escherichia coli 2362-75]
 gi|312945175|gb|ADR26002.1| lipoyl synthase [Escherichia coli O83:H1 str. NRG 857C]
 gi|315059883|gb|ADT74210.1| lipoate synthase [Escherichia coli W]
 gi|315135294|dbj|BAJ42453.1| lipoyl synthase [Escherichia coli DH1]
 gi|315255070|gb|EFU35038.1| lipoyl synthase [Escherichia coli MS 85-1]
 gi|315287080|gb|EFU46494.1| lipoyl synthase [Escherichia coli MS 110-3]
 gi|315292094|gb|EFU51446.1| lipoyl synthase [Escherichia coli MS 153-1]
 gi|315299113|gb|EFU58367.1| lipoyl synthase [Escherichia coli MS 16-3]
 gi|315616454|gb|EFU97071.1| lipoic acid synthetase [Escherichia coli 3431]
 gi|320193034|gb|EFW67674.1| Lipoate synthase [Escherichia coli O157:H7 str. EC1212]
 gi|320194190|gb|EFW68822.1| Lipoate synthase [Escherichia coli WV_060327]
 gi|320198246|gb|EFW72850.1| Lipoate synthase [Escherichia coli EC4100B]
 gi|320638077|gb|EFX07841.1| lipoyl synthase [Escherichia coli O157:H7 str. G5101]
 gi|320643483|gb|EFX12653.1| lipoyl synthase [Escherichia coli O157:H- str. 493-89]
 gi|320648818|gb|EFX17445.1| lipoyl synthase [Escherichia coli O157:H- str. H 2687]
 gi|320654404|gb|EFX22451.1| lipoyl synthase [Escherichia coli O55:H7 str. 3256-97 TW 07815]
 gi|320660085|gb|EFX27615.1| lipoyl synthase [Escherichia coli O55:H7 str. USDA 5905]
 gi|320664882|gb|EFX32017.1| lipoyl synthase [Escherichia coli O157:H7 str. LSU-61]
 gi|323153651|gb|EFZ39899.1| lipoic acid synthetase [Escherichia coli EPECa14]
 gi|323158919|gb|EFZ44930.1| lipoic acid synthetase [Escherichia coli E128010]
 gi|323164083|gb|EFZ49891.1| lipoic acid synthetase [Shigella sonnei 53G]
 gi|323179896|gb|EFZ65453.1| lipoic acid synthetase [Escherichia coli 1180]
 gi|323185018|gb|EFZ70385.1| lipoic acid synthetase [Escherichia coli 1357]
 gi|323379553|gb|ADX51821.1| lipoic acid synthetase [Escherichia coli KO11]
 gi|323938390|gb|EGB34644.1| lipoyl synthase [Escherichia coli E1520]
 gi|323943043|gb|EGB39202.1| lipoyl synthase [Escherichia coli E482]
 gi|323945103|gb|EGB41165.1| lipoyl synthase [Escherichia coli H120]
 gi|323952794|gb|EGB48662.1| lipoyl synthase [Escherichia coli H252]
 gi|323958386|gb|EGB54092.1| lipoyl synthase [Escherichia coli H263]
 gi|323963197|gb|EGB58765.1| lipoyl synthase [Escherichia coli H489]
 gi|323967575|gb|EGB62991.1| lipoyl synthase [Escherichia coli M863]
 gi|323972083|gb|EGB67297.1| lipoyl synthase [Escherichia coli TA007]
 gi|323976390|gb|EGB71480.1| lipoyl synthase [Escherichia coli TW10509]
 gi|324006321|gb|EGB75540.1| lipoyl synthase [Escherichia coli MS 57-2]
 gi|324010483|gb|EGB79702.1| lipoyl synthase [Escherichia coli MS 60-1]
 gi|324016098|gb|EGB85317.1| lipoyl synthase [Escherichia coli MS 117-3]
 gi|324116702|gb|EGC10617.1| lipoyl synthase [Escherichia coli E1167]
 gi|326341379|gb|EGD65171.1| Lipoate synthase [Escherichia coli O157:H7 str. 1044]
 gi|326345843|gb|EGD69582.1| Lipoate synthase [Escherichia coli O157:H7 str. 1125]
 gi|330910389|gb|EGH38899.1| lipoate synthase [Escherichia coli AA86]
 gi|331037928|gb|EGI10148.1| lipoyl synthase [Escherichia coli H736]
 gi|331044537|gb|EGI16664.1| lipoyl synthase [Escherichia coli M605]
 gi|331049914|gb|EGI21972.1| lipoyl synthase [Escherichia coli M718]
 gi|331054903|gb|EGI26912.1| lipoyl synthase [Escherichia coli TA206]
 gi|331060414|gb|EGI32378.1| lipoyl synthase [Escherichia coli TA143]
 gi|331066204|gb|EGI38088.1| lipoyl synthase [Escherichia coli TA271]
 gi|331070635|gb|EGI41998.1| lipoyl synthase [Escherichia coli TA280]
 gi|331076344|gb|EGI47626.1| lipoyl synthase [Escherichia coli H591]
 gi|331080730|gb|EGI51904.1| lipoyl synthase [Escherichia coli H299]
 gi|332104116|gb|EGJ07462.1| lipoyl synthase [Shigella sp. D9]
 gi|332341974|gb|AEE55308.1| lipoic acid synthetase LipA [Escherichia coli UMNK88]
 gi|332761002|gb|EGJ91290.1| lipoic acid synthetase [Shigella flexneri 4343-70]
 gi|332761266|gb|EGJ91552.1| lipoic acid synthetase [Shigella flexneri 2747-71]
 gi|332763373|gb|EGJ93613.1| lipoic acid synthetase [Shigella flexneri K-671]
 gi|332768270|gb|EGJ98455.1| lipoic acid synthetase [Shigella flexneri 2930-71]
 gi|333008098|gb|EGK27574.1| lipoic acid synthetase [Shigella flexneri K-218]
 gi|333010039|gb|EGK29474.1| lipoic acid synthetase [Shigella flexneri K-272]
 gi|333020872|gb|EGK40132.1| lipoic acid synthetase [Shigella flexneri K-227]
 gi|333021560|gb|EGK40810.1| lipoic acid synthetase [Shigella flexneri K-304]
          Length = 321

 Score = 57.3 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 32/183 (17%), Positives = 68/183 (37%), Gaps = 12/183 (6%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V    G  ++   ++ V  A+ + D  +  + +   +    R    DG   
Sbjct: 94  CTRRCPFCDV--AHGRPVAPDANEPVKLAQTIADMALRYVVITSVD----RDDLRDGGAQ 147

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAH-GDLDVLMPYLHLPVQSGSDRILK 304
            F+D + ++ E    +++       R   D  +         +  +    V     RI +
Sbjct: 148 HFADCITAIREKSPQIKIETLVPDFRGRMDRALDILTATPPDVFNHNLENV----PRIYR 203

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
            +          ++++R +   P+I   S  +VG  GET+++    M  + + G      
Sbjct: 204 QVRPGADYNWSLKLLERFKEAHPEIPTKSGLMVGL-GETNEEIIEVMRDLRRHGVTMLTL 262

Query: 365 FKY 367
            +Y
Sbjct: 263 GQY 265


>gi|332686760|ref|YP_004456534.1| putative coproporphyrinogen III oxidase [Melissococcus plutonius
           ATCC 35311]
 gi|332370769|dbj|BAK21725.1| putative coproporphyrinogen III oxidase of BSHemN-type,
           oxygen-independent, in heatshock gene cluster
           [Melissococcus plutonius ATCC 35311]
          Length = 384

 Score = 57.3 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 41/201 (20%), Positives = 77/201 (38%), Gaps = 24/201 (11%)

Query: 177 TAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR 236
           +A++ I   C+  C +C        E             + +++ + EI L+  NV+   
Sbjct: 11  SAYIHIPF-CEHICYYCDFNKVLIKE---------QPVDRYLESLLKEIELVTGNVSCEL 60

Query: 237 GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMS---------DCLIKAHGDLDVL 287
                G     +     L  +   +  ++T S+  + +            I+   +    
Sbjct: 61  ETLYIGGGTPSALSSKQLDYLLSGIIKQFTFSNTIEFTVEANPGDLTPEKIQIMKNYG-- 118

Query: 288 MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDF 347
           +  L + VQS  ++ILK + R+HT  E  Q I R+     +  IS D I   PG+T ++F
Sbjct: 119 VNRLSMGVQSFDNQILKKIGRKHTVKEIYQAIQRLEKANFN-NISIDLIYALPGQTLENF 177

Query: 348 RATMDLVDKIGYAQAFSFKYS 368
           + ++     I         YS
Sbjct: 178 KESL--CKAIELNLPHYALYS 196


>gi|328471663|gb|EGF42540.1| coproporphyrinogen III oxidase [Vibrio parahaemolyticus 10329]
          Length = 463

 Score = 57.3 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 42/252 (16%), Positives = 86/252 (34%), Gaps = 28/252 (11%)

Query: 173 KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNV 232
           +R ++ ++ I   C K C +C          S    + +D     I        L+G+ V
Sbjct: 56  ERPLSLYVHIPF-CHKLCYYCGCNKVITRH-SHKADEYLDVLEHEIRQ--RAALLVGRTV 111

Query: 233 NAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDC---------LIKAHGD 283
                    G   TF      ++ +  L+R  +T S   ++S           ++     
Sbjct: 112 TQLH---FGGGTPTF-LSEKQITRVMNLLRQEFTFSDDAEISIEVDPREIQITMLDHLRS 167

Query: 284 LDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS-DFIVGFPGE 342
                  L + VQ  +  + K +NR         ++ R + +      ++ D I G P +
Sbjct: 168 EG--FNRLSIGVQDFNKEVQKLVNREQDEEFIFAMVARAKEL--GFRSTNLDLIYGLPKQ 223

Query: 343 TDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM---LEQVDENVKAERLLCLQKKLR 399
           T   F  T++ V ++   +   F Y+       +      E + +    E++  LQ  + 
Sbjct: 224 TKASFAKTLEQVLEMQPGRLSVFNYAHMPQLFAAQRKIKDEDLPKAE--EKMAILQDTIA 281

Query: 400 EQQVSFNDACVG 411
               +     +G
Sbjct: 282 TLTGAGYQ-FIG 292


>gi|323191266|gb|EFZ76530.1| lipoic acid synthetase [Escherichia coli RN587/1]
          Length = 321

 Score = 57.3 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 32/183 (17%), Positives = 68/183 (37%), Gaps = 12/183 (6%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V    G  ++   ++ V  A+ + D  +  + +   +    R    DG   
Sbjct: 94  CTRRCPFCDV--AHGRPVAPDANEPVKLAQTIADMALRYVVITSVD----RDDLRDGGAQ 147

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAH-GDLDVLMPYLHLPVQSGSDRILK 304
            F+D + ++ E    +++       R   D  +         +  +    V     RI +
Sbjct: 148 HFADCITAIREKSPQIKIETLLPDFRGRMDRALDILTATPPDVFNHNLENV----PRIYR 203

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
            +          ++++R +   P+I   S  +VG  GET+++    M  + + G      
Sbjct: 204 QVRPGADYNWSLKLLERFKEAHPEIPTKSGLMVGL-GETNEEIIEVMRDLRRHGVTMLTL 262

Query: 365 FKY 367
            +Y
Sbjct: 263 GQY 265


>gi|260682429|ref|YP_003213714.1| putative radical SAM superfamily protein [Clostridium difficile
           CD196]
 gi|260686028|ref|YP_003217161.1| putative radical SAM superfamily protein [Clostridium difficile
           R20291]
 gi|260208592|emb|CBA61296.1| putative radical SAM superfamily protein [Clostridium difficile
           CD196]
 gi|260212044|emb|CBE02613.1| putative radical SAM superfamily protein [Clostridium difficile
           R20291]
          Length = 316

 Score = 57.3 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 37/239 (15%), Positives = 81/239 (33%), Gaps = 35/239 (14%)

Query: 174 RGVTAFLTIQEGCDKFCTFC---VVPYTRGIEISR------SLSQVVDEARKLIDNGVCE 224
              TA++ I E C   C+FC   +   TR  ++SR      S  +++D  +      +  
Sbjct: 26  PPTTAYIMIGEKCINKCSFCSQSIESSTRKDKLSRVIWPEFSKEEILDALKAYKGKNIKR 85

Query: 225 ITL---LGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAH 281
           I +     +  +      ++         +   ++++   +++   S   D     I A 
Sbjct: 86  ICIQSMASEEAHNSVLDFINYISGKIDMPISLSAKLENDEQIKKFFSVGVDKIGIAIDA- 144

Query: 282 GDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPG 341
                            S++ L    + +   E  + I  +    P+  IS+  IVG  G
Sbjct: 145 -----------------SNKELYEKIKGNNYDEKLKFITEMSKSYPN-KISTHIIVGM-G 185

Query: 342 ETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLRE 400
           E+ +D       + +        F ++P  GT    + +         R+  +   + +
Sbjct: 186 ESHEDIYNLYIYLKENDVT-ISLFAFTPVRGTKMEKINQ--PSIESYRRVQLMSYMINK 241


>gi|255659712|ref|ZP_05405121.1| radical SAM domain protein [Mitsuokella multacida DSM 20544]
 gi|260848286|gb|EEX68293.1| radical SAM domain protein [Mitsuokella multacida DSM 20544]
          Length = 607

 Score = 57.3 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 45/234 (19%), Positives = 76/234 (32%), Gaps = 44/234 (18%)

Query: 183 QEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARK-LIDNGVC-EITLLGQNVNAWRGKG 239
           Q GC   C FC +    G  I  RS + ++ EA+      G    I  +G     +R   
Sbjct: 304 QRGCFGGCNFCAIISHEGRIIQRRSHASLIREAKILTHMKGFKGYIHDVGGPTANFRRTS 363

Query: 240 LDG-----------------------EKCTFSDLLYSLSEIKGL--------VRLRYTTS 268
            DG                       +   +  LL  L  + G+        +R  Y   
Sbjct: 364 CDGQLKRGTCRGKPCLSPEPCKLLVADHSDYIKLLRELRSLPGVKKVFVRSGIRFDYLLL 423

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
              D    L K H     +   L +  +  SDR+ + M +      Y + +++ R +   
Sbjct: 424 AKDDFLYELCKYH-----VSGQLKIAPEHISDRVTRLMGKS-NCAVYLRFVEKFRRMNER 477

Query: 329 IA----ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           +     +   F+   PG    D     + +  +GY       + P  GT  + M
Sbjct: 478 LGKKQYLVPYFMSSHPGSELSDAVELAEFIRDMGYHPQQVQDFIPTPGTLSTCM 531


>gi|192360748|ref|YP_001981305.1| lipoyl synthase [Cellvibrio japonicus Ueda107]
 gi|190686913|gb|ACE84591.1| lipoic acid synthetase [Cellvibrio japonicus Ueda107]
          Length = 344

 Score = 57.3 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 32/210 (15%), Positives = 72/210 (34%), Gaps = 16/210 (7%)

Query: 161 ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV--VDEARKLI 218
           E  +  + G     G   F+ + + C + C FC V + +       L +      A  + 
Sbjct: 84  EEANCPNLGECFSGGTATFMIMGDICTRRCPFCDVGHGKPN----PLDENEPRQLAEAIA 139

Query: 219 DNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLI 278
           +  +  + +   +    R    DG    F+D +     +   +++       R   D  +
Sbjct: 140 EMRLKYVVITSVD----RDDLRDGGAQHFADCIREARALSPKLQVEVLVPDFRGRMDIAL 195

Query: 279 KAH-GDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIV 337
                +   +  +    ++    R+ +            +++ + ++ RPD+   S  +V
Sbjct: 196 DILEQEAPDVFNHNMETIK----RLYRQSRPGANYEWSLELLRQYKARRPDVLTKSGLMV 251

Query: 338 GFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           G  GET D+   TM  +           +Y
Sbjct: 252 GL-GETKDEIIETMQHLRDHDVDMLTIGQY 280


>gi|168819771|ref|ZP_02831771.1| protein YgiQ [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|205343561|gb|EDZ30325.1| protein YgiQ [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|320087617|emb|CBY97381.1| UPF0313 protein PA4928 [Salmonella enterica subsp. enterica serovar
           Weltevreden str. 2007-60-3289-1]
          Length = 723

 Score = 57.3 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 52/297 (17%), Positives = 100/297 (33%), Gaps = 58/297 (19%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDN--GVCEIT--LLGQNVNA 234
           + I  GC   C+FC +    G  I SRS   +++E   + D   G   +   L G   N 
Sbjct: 380 INIMRGCFGGCSFCSITEHEGRIIQSRSEDSIINEIEAIRDTVPGFTGVISDLGGPTANM 439

Query: 235 WR----------------------GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
           +                          +D +     +L     E+KG+ ++   +    D
Sbjct: 440 YMLRCKSPRAEQTCRRLSCVYPDICPHMDTDHTPTINLYRRARELKGIKKILIASGVRYD 499

Query: 273 MSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRRH--TAYEYRQIIDRI-RSVRP 327
           ++    +   +L    +  YL +  +   +  L  M +    +   ++++ D   +    
Sbjct: 500 IAVEDPRYIKELASHHVGGYLKIAPEHTEEGPLSKMMKPGMGSYDRFKELFDLYSKQAGK 559

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGY--AQAFSFKYSPR-----LGTPGSNMLE 380
           +  +   FI   PG  D+D       + +  +   Q  +F  SP      +   G N L 
Sbjct: 560 EQYLIPYFISAHPGTRDEDMVNLALWLKRHRFRLDQVQNFYPSPLANSTTMYYTGKNPLG 619

Query: 381 QV---DENV---KAERLLCLQKKL-------------REQQVSFNDACVGQIIEVLI 418
           ++    E+V   K +R   L K L             +  +       +G   E L+
Sbjct: 620 KIGYKSEDVVVPKGDRQRRLHKALLRYHDPANWPLIRQALEAMGKKHLIGGRRECLV 676


>gi|146313730|ref|YP_001178804.1| coproporphyrinogen III oxidase [Enterobacter sp. 638]
 gi|145320606|gb|ABP62753.1| coproporphyrinogen III oxidase, anaerobic [Enterobacter sp. 638]
          Length = 457

 Score = 57.3 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 36/248 (14%), Positives = 83/248 (33%), Gaps = 20/248 (8%)

Query: 173 KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS-------LSQVVDEARKLIDNGVCEI 225
           +R ++ ++ I   C K C FC        +  ++         +++  A       V ++
Sbjct: 50  ERPLSLYVHIPF-CHKLCYFCGCNKIVTRQQHKADHYLDALEQEILHRAPLFAGRHVSQL 108

Query: 226 TLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLD 285
              G             +     DLL +         +      PR++   ++       
Sbjct: 109 HWGGGTPTYLN----KAQISRLMDLLRANFRFDADAEISIEV-DPREIELDVLDHLRAEG 163

Query: 286 VLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS-DFIVGFPGETD 344
                L + VQ  +  + + +NR         +++  R +      ++ D I G P +T 
Sbjct: 164 --FNRLSMGVQDFNKEVQRLVNREQDEDFIFALLNHAREI--GFTSTNIDLIYGLPKQTP 219

Query: 345 DDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQV 403
           + F  T+  V ++   +   F Y+       +   ++  D     ++L  LQ+ +     
Sbjct: 220 ESFAFTLKRVAELNPDRLSVFNYAHLPTLFAAQRKIKDADLPSAQQKLDILQETITSLTE 279

Query: 404 SFNDACVG 411
           +     +G
Sbjct: 280 TGYQ-FIG 286


>gi|255691115|ref|ZP_05414790.1| radical SAM protein, family [Bacteroides finegoldii DSM 17565]
 gi|260623468|gb|EEX46339.1| radical SAM protein, family [Bacteroides finegoldii DSM 17565]
          Length = 323

 Score = 57.3 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 35/202 (17%), Positives = 72/202 (35%), Gaps = 11/202 (5%)

Query: 188 KFCTFCVVPYTRGIEISRSLSQV---VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK 244
             CT+C           R+   +   + E +    +   E+  L              E 
Sbjct: 43  GGCTYCNNQTFNPDYC-RTEKSITTQLQEGKYFFAHKYPEMKYLA---YFQAYTNTYAEL 98

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV-LMPYLHLPVQSGSDRIL 303
                      ++ G+V L   T  P  M + L+    +L+      +   ++S  D+ L
Sbjct: 99  EGLKRKYEEALKVDGVVGLVIGT-RPDCMPEGLLHYLEELNKHAFLMVEYGIESTCDKTL 157

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           + +NR HT  E  + ++  R+    I      I+G PGET +       ++ ++  +   
Sbjct: 158 QRINRGHTYAETVEAVE--RTAACGILTGGHIILGLPGETHETMVEQAGILSRLPLSTLK 215

Query: 364 SFKYSPRLGTPGSNMLEQVDEN 385
             +     GT  ++   +V ++
Sbjct: 216 IHQLQLIRGTRMAHEYAEVPDD 237


>gi|222445079|ref|ZP_03607594.1| hypothetical protein METSMIALI_00696 [Methanobrevibacter smithii
           DSM 2375]
 gi|222434644|gb|EEE41809.1| hypothetical protein METSMIALI_00696 [Methanobrevibacter smithii
           DSM 2375]
          Length = 439

 Score = 57.3 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 56/335 (16%), Positives = 109/335 (32%), Gaps = 58/335 (17%)

Query: 77  AEKVYSFLGRIRN----LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT 132
            E  ++ L  I+     LK     E   L++    C A A     +  S  ++V V  + 
Sbjct: 81  EEDYFNVLKMIKQSGIPLKRKDRSENDPLIIAGGPC-ATANP---MPLSDYIDVFVIGEG 136

Query: 133 YYRLPELLERARFGK--------------------RVVDTDYSVEDKFERLSIVD----G 168
              + + L+R    K                    ++   D           I+      
Sbjct: 137 EVTINKFLDRYLENKNLDNFLDMDGIYIPEFNNNAKIALIDDMKNAYHITQPIITKTDKE 196

Query: 169 GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITL 227
            Y      +  L +  GC + C FC+  Y        ++ ++VD A K  +N  + +ITL
Sbjct: 197 DYKTVFSDSIMLNVSRGCTRGCRFCMSSYLYRPLRETTIKELVDIALKTRENTNLNKITL 256

Query: 228 LGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL 287
           +G  V  +    L+G         + ++           +     +S   ++        
Sbjct: 257 IGAAVGDYY--DLEGLTTALESEGFQIA---------TPSLRIDSLSRETLETLKKSG-- 303

Query: 288 MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP-DIAISSDFIVGFPGETDDD 346
           +  + +  +S S    +            +I   I++    D  I   F++G P E+ +D
Sbjct: 304 LKSITIAPESISTLRERINKS----ISDEKIFSVIKNAVDLDFNIKLYFLIGIPYESKED 359

Query: 347 FRATMDLVDKI-------GYAQAFSFKYSPRLGTP 374
                + ++KI        Y +       P+  TP
Sbjct: 360 IEELANYIEKIANMHKNRKYIKFSINPVIPKPQTP 394


>gi|198276292|ref|ZP_03208823.1| hypothetical protein BACPLE_02484 [Bacteroides plebeius DSM 17135]
 gi|198270734|gb|EDY95004.1| hypothetical protein BACPLE_02484 [Bacteroides plebeius DSM 17135]
          Length = 314

 Score = 57.3 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 35/202 (17%), Positives = 65/202 (32%), Gaps = 11/202 (5%)

Query: 188 KFCTFCVVPYTRGIEISRSLSQV---VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK 244
             CT+C           R+   V   ++E ++       E+  L              E 
Sbjct: 43  GGCTYCNNQTFNPAYC-RTDKSVTQQLEEGKEFFARKYPEMKFLA---YFQAYTNTYAEL 98

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL-DVLMPYLHLPVQSGSDRIL 303
                +      ++G+V L   T  P  M + L+     L       +   ++S  +  L
Sbjct: 99  DKLRQMYEEALRVEGVVGLVIGT-RPDCMPEELLDYLEKLNKRTFLLVEYGIESTDNHTL 157

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           + +NR HT       +   R+    I +    I+G PGE  +        V ++      
Sbjct: 158 QRINRGHTFECTVDAVK--RTAERGIRVGGHVILGLPGENHEAIIRQARQVSELPLTTLK 215

Query: 364 SFKYSPRLGTPGSNMLEQVDEN 385
             +     GT  ++  E   E+
Sbjct: 216 MHQLQLVRGTRMAHEYELCPED 237


>gi|158293213|ref|XP_314540.4| AGAP010568-PA [Anopheles gambiae str. PEST]
 gi|157016850|gb|EAA09970.4| AGAP010568-PA [Anopheles gambiae str. PEST]
          Length = 400

 Score = 57.3 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 27/183 (14%), Positives = 62/183 (33%), Gaps = 9/183 (4%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V   R        ++ ++ A  +   G+  I L   +    R    DG   
Sbjct: 146 CTRGCRFCSVKTARAPP-PLDPAEPMNTATAIASWGLDYIVLTSVD----RDDLPDGGSN 200

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
             +  +  + +    + +       R    C I+      + +   ++         ++ 
Sbjct: 201 HIAATIKEIKKQNPRIFVECLAPDFRGDLQC-IETVAMSGLDVYAHNIETVEALTPFVRD 259

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
              R+      + +  ++   P++   S  ++G  GETD+    T+  +  +G       
Sbjct: 260 RRARYRQS--LECLASVKRFNPNLMTKSSIMLGL-GETDEQVEQTLKDLRSVGVDCLTLG 316

Query: 366 KYS 368
           +Y 
Sbjct: 317 QYM 319


>gi|126661033|ref|ZP_01732118.1| hypothetical protein CY0110_26949 [Cyanothece sp. CCY0110]
 gi|126617687|gb|EAZ88471.1| hypothetical protein CY0110_26949 [Cyanothece sp. CCY0110]
          Length = 535

 Score = 57.3 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 51/239 (21%), Positives = 94/239 (39%), Gaps = 26/239 (10%)

Query: 177 TAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR 236
              + +   C + C FC+  Y      + SL   +  A +        I LLG +V    
Sbjct: 223 IYMVEVVRSCPEMCRFCLASYLTLPFRTASLEGSLIPAIEKGLQVTKRIGLLGASVTQH- 281

Query: 237 GKGLDGEKCTFSDLLYSLSEIK-GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPV 295
                     F+DLL  L + K   VR+   +     +++ L K   D       + + V
Sbjct: 282 --------PEFNDLLDYLHQPKYEDVRVSIASVRTNTLTEKLAKILSDRHT--KSVTIAV 331

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD--IAISSDFIVGFPGETDDDFRATMDL 353
           +SGS++I K +N++    E  +II    + +      +    ++G P E ++D   T+ +
Sbjct: 332 ESGSEKIRKIINKK---LENEEIIQAAINAKAGGLKNLKLYGMIGIPKENEEDIEQTIRM 388

Query: 354 VDKIGYA------QAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFN 406
           ++ I  A            + P+  TP           +  +RL  LQK+L ++ + F 
Sbjct: 389 LESIKKAVPGLRLTFGCSTFVPKSHTPFQWFG---VNKIAKKRLRYLQKQLGKKGIEFR 444


>gi|110804723|ref|YP_688243.1| lipoyl synthase [Shigella flexneri 5 str. 8401]
 gi|110614271|gb|ABF02938.1| lipoate synthesis [Shigella flexneri 5 str. 8401]
          Length = 316

 Score = 57.3 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 32/183 (17%), Positives = 68/183 (37%), Gaps = 12/183 (6%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V    G  ++   ++ V  A+ + D  +  + +   +    R    DG   
Sbjct: 89  CTRRCPFCDV--AHGRPVAPDANEPVKLAQTIADMALRYVVITSVD----RDDLRDGGAQ 142

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAH-GDLDVLMPYLHLPVQSGSDRILK 304
            F+D + ++ E    +++       R   D  +         +  +    V     RI +
Sbjct: 143 HFADCITAIREKSPQIKIETLVPDFRGRMDRALDILTATPPDVFNHNLENV----PRIYR 198

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
            +          ++++R +   P+I   S  +VG  GET+++    M  + + G      
Sbjct: 199 QVRPGADYNWSLKLLERFKEAHPEIPTKSGLMVGL-GETNEEIIEVMRDLRRHGVTMLTL 257

Query: 365 FKY 367
            +Y
Sbjct: 258 GQY 260


>gi|28896889|ref|NP_796494.1| coproporphyrinogen III oxidase [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260365925|ref|ZP_05778419.1| coproporphyrinogen dehydrogenase [Vibrio parahaemolyticus K5030]
 gi|260877787|ref|ZP_05890142.1| coproporphyrinogen dehydrogenase [Vibrio parahaemolyticus AN-5034]
 gi|260895563|ref|ZP_05904059.1| coproporphyrinogen dehydrogenase [Vibrio parahaemolyticus Peru-466]
 gi|260902588|ref|ZP_05910983.1| coproporphyrinogen dehydrogenase [Vibrio parahaemolyticus AQ4037]
 gi|28805097|dbj|BAC58378.1| oxygen-independent coproporphyrinogen III oxidase [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|308088486|gb|EFO38181.1| coproporphyrinogen dehydrogenase [Vibrio parahaemolyticus Peru-466]
 gi|308089769|gb|EFO39464.1| coproporphyrinogen dehydrogenase [Vibrio parahaemolyticus AN-5034]
 gi|308109706|gb|EFO47246.1| coproporphyrinogen dehydrogenase [Vibrio parahaemolyticus AQ4037]
 gi|308113448|gb|EFO50988.1| coproporphyrinogen dehydrogenase [Vibrio parahaemolyticus K5030]
          Length = 463

 Score = 57.3 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 42/252 (16%), Positives = 86/252 (34%), Gaps = 28/252 (11%)

Query: 173 KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNV 232
           +R ++ ++ I   C K C +C          S    + +D     I        L+G+ V
Sbjct: 56  ERPLSLYVHIPF-CHKLCYYCGCNKVITRH-SHKADEYLDLLEHEIRQ--RAALLVGRTV 111

Query: 233 NAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDC---------LIKAHGD 283
                    G   TF      ++ +  L+R  +T S   ++S           ++     
Sbjct: 112 TQLH---FGGGTPTF-LSEKQITRVMNLLRQEFTFSDDAEISIEVDPREIQITMLDHLRS 167

Query: 284 LDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS-DFIVGFPGE 342
                  L + VQ  +  + K +NR         ++ R + +      ++ D I G P +
Sbjct: 168 EG--FNRLSIGVQDFNKEVQKLVNREQDEEFIFAMVARAKEL--GFRSTNLDLIYGLPKQ 223

Query: 343 TDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM---LEQVDENVKAERLLCLQKKLR 399
           T   F  T++ V ++   +   F Y+       +      E + +    E++  LQ  + 
Sbjct: 224 TKASFAKTLEQVLEMQPGRLSVFNYAHMPQLFAAQRKIKDEDLPKAE--EKMAILQDTIA 281

Query: 400 EQQVSFNDACVG 411
               +     +G
Sbjct: 282 TLTGAGYQ-FIG 292


>gi|323703392|ref|ZP_08115041.1| Coproporphyrinogen dehydrogenase [Desulfotomaculum nigrificans DSM
           574]
 gi|323531661|gb|EGB21551.1| Coproporphyrinogen dehydrogenase [Desulfotomaculum nigrificans DSM
           574]
          Length = 491

 Score = 57.3 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 37/225 (16%), Positives = 76/225 (33%), Gaps = 19/225 (8%)

Query: 186 CDKFCTFCVVPYTRGIEISRSL---------SQVVDEARKLIDNGVC--EITLLGQNVNA 234
           C   C +C  P        R++          ++      L  +G+    I L G    +
Sbjct: 176 CPSRCLYCSFPSYSIK-RHRNMVEPFMKSLLEEIKLVGEALQAHGLKVQTIYLGGGTPTS 234

Query: 235 WRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP 294
                LD  +C    +   L +             P  ++  ++         +  L + 
Sbjct: 235 L---NLDQLRCLLEAVQSYL-KQPDTREFTVEGGRPDTLNQDVLGLLAQYG--VTRLSIN 288

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
            QS + + L+++ R HT  +  + ++  R       ++ D I+G PGET  D   T+  +
Sbjct: 289 PQSMNQQTLEAIGRAHTVEDVYRAVELARQ-FNFPTLNMDLIIGLPGETTRDVSQTVARI 347

Query: 355 DKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLR 399
            K+          + +  +     L+Q       E +   Q+  +
Sbjct: 348 VKLKPENLTVHALALKRASDLKQRLDQFPPATADEAVAMWQETAQ 392


>gi|300951124|ref|ZP_07164990.1| lipoyl synthase [Escherichia coli MS 116-1]
 gi|300959194|ref|ZP_07171274.1| lipoyl synthase [Escherichia coli MS 175-1]
 gi|300314195|gb|EFJ63979.1| lipoyl synthase [Escherichia coli MS 175-1]
 gi|300449610|gb|EFK13230.1| lipoyl synthase [Escherichia coli MS 116-1]
          Length = 321

 Score = 57.3 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 32/183 (17%), Positives = 68/183 (37%), Gaps = 12/183 (6%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V    G  ++   ++ V  A+ + D  +  + +   +    R    DG   
Sbjct: 94  CTRRCPFCDV--AHGRPVAPDANEPVKLAQTIADMALRYVVITSVD----RDDLRDGGAQ 147

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAH-GDLDVLMPYLHLPVQSGSDRILK 304
            F+D + ++ E    +++       R   D  +         +  +    V     RI +
Sbjct: 148 HFADCITAIREKSPQIKIETLVPDFRGRMDRALDILTATPPDVFNHNLENV----PRIYR 203

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
            +          ++++R +   P+I   S  +VG  GET+++    M  + + G      
Sbjct: 204 QVRPGADYNWSLKLLERFKEAHPEIPTKSGLMVGL-GETNEEIIEVMRDLRRHGVTMLTL 262

Query: 365 FKY 367
            +Y
Sbjct: 263 GQY 265


>gi|153809517|ref|ZP_01962185.1| hypothetical protein BACCAC_03835 [Bacteroides caccae ATCC 43185]
 gi|149127825|gb|EDM19048.1| hypothetical protein BACCAC_03835 [Bacteroides caccae ATCC 43185]
          Length = 348

 Score = 57.3 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 32/223 (14%), Positives = 70/223 (31%), Gaps = 37/223 (16%)

Query: 169 GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE-ISR-SLSQVVDEARKLIDNGVCEIT 226
            +  +  +   + I   C   C +C +          R S   ++D  ++    G     
Sbjct: 45  HFGNRIYIRGLIEISNCCRNNCYYCGIRKGNPHVARYRLSPESILDCCKQGYALGFRTFV 104

Query: 227 LLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV 286
           L G            GE    +D    +  I   +R  Y      D +  L       + 
Sbjct: 105 LQG------------GEDPALTD--DRIETIVATIRRHYP-----DCAITLSLGEKSREA 145

Query: 287 LMPYLHLPVQSGSDRILKSMNRRHTAYEY----------RQIIDRIRSVRP-DIAISSDF 335
              + H      +  +L+  +  + A  Y          +Q +  +++++       +  
Sbjct: 146 YERFFHAG---ANRYLLR--HETYDATHYSQLHPAGMSGKQRLQCLQNLKETGYQTGTGI 200

Query: 336 IVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           +VG PG+T +     +  ++K+         + P   TP +  
Sbjct: 201 MVGSPGQTVEHLIQDILFIEKLRPEMIGIGPFLPHQDTPFARY 243


>gi|157372467|ref|YP_001480456.1| hypothetical protein Spro_4234 [Serratia proteamaculans 568]
 gi|157324231|gb|ABV43328.1| Radical SAM domain protein [Serratia proteamaculans 568]
          Length = 721

 Score = 57.3 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 59/373 (15%), Positives = 116/373 (31%), Gaps = 72/373 (19%)

Query: 127 VVGPQTYYRLPELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNR-------KRGVTA 178
           ++  +T       L ++   + V ++         E  S+    Y R       K  + A
Sbjct: 310 ILHHETNPGCARALMQSHGDRYVWINPPAIPLTTPEMDSVFALPYQRIPHPSYGKETIPA 369

Query: 179 F------LTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDNGVCEITLLGQ- 230
           +      + I  GC   C+FC +    G  I SRS   ++ E  ++ D       ++   
Sbjct: 370 YDMIRFSVNIMRGCYGGCSFCSITEHEGRIIQSRSEDSIIREIEEIRDKVPGFTGVISDL 429

Query: 231 -----------------NVNAWRGKGLDGEKCTFSD--------LLYSLSEIKGLVRLRY 265
                                 R   +  E CT+ D        L      ++G+ ++  
Sbjct: 430 GGPTANMYMLRCTNPRAEQTCRRASCVYPEICTYMDTNHEPTIKLYRRARSLEGIKKILI 489

Query: 266 TTSHPRDMSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRR--HTAYEYRQIIDR 321
            +    D++    +   +L    +  YL +  +   +  L  M +    +   ++Q+ D 
Sbjct: 490 ASGVRYDLAVEDPRYIKELATHHVGGYLKIAPEHTEEGPLSKMKKPGMGSYDRFKQLFDH 549

Query: 322 IRSVR-PDIAISSDFIVGFPGETDDDFRATMDLVDKIGY--AQAFSFKYSPRLGTPGSNM 378
              +   +  +   FI   PG  D+D       + K  +   Q  +F  SP   +     
Sbjct: 550 YSKLAGKEQYLIPYFISSHPGTRDEDMVNLALWLKKNRFRLDQVQNFYPSPMANSTTMYY 609

Query: 379 LEQVD--------ENV---KAERLLCLQKKLREQQVSFN-------------DACVGQII 414
             +          E+V   K +R   L K L       N                +G   
Sbjct: 610 SGKNPLSRVGYKSEDVVIPKGDRQRRLHKALLRYHDPANWAMIRTALEEMGMKHLIGSRR 669

Query: 415 EVLIEKHGKEKGK 427
           E L+     ++ +
Sbjct: 670 ECLVPAPSIDEQR 682


>gi|328882430|emb|CCA55669.1| Fe-S oxidoreductase [Streptomyces venezuelae ATCC 10712]
          Length = 643

 Score = 57.3 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 58/321 (18%), Positives = 105/321 (32%), Gaps = 63/321 (19%)

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
             V+D D     K   + + +  + R       + I  GC + C FC           RS
Sbjct: 241 HTVMDLDEWPYPKQPLVPLAETVHERMS-----VEIFRGCTRGCRFCQAGMITRPVRERS 295

Query: 207 LSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE--IKGLVRL 263
           ++ + +   K +   G  E+ LL  +       G         D+   L++   +  V L
Sbjct: 296 ITGIGEMVEKGLKATGFEEVGLLSLSSADHSEIG---------DIAKGLADRYTEDKVGL 346

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR-- 321
              ++     +  L             L    + GS+R+ K +N+  +  +  + +    
Sbjct: 347 SLPSTRVDAFNVDLANELTRNGR-RSGLTFAPEGGSERMRKVINKMVSEEDLIRTVSTAY 405

Query: 322 ---IRSVRPDIAISSDFIVGFPGETDDDFRA----TMDLVDKIGYAQ--------AFSFK 366
               R V+        F+ G P ETD+D        M+++ +                  
Sbjct: 406 GNGWRQVK------LYFMCGLPTETDEDVLQIADMAMNVIAEGRKVSGQNDIRCTVSIGG 459

Query: 367 YSPRLGTPGSNMLEQVDENVKAERLLCLQKKLR---------------------EQQVSF 405
           + P+  TP      Q+      ERL  L+ K+R                     E  +S 
Sbjct: 460 FVPKPHTP-FQWAPQLSAEETDERLRKLRDKIRGDKKYGRSIGFRYHDGKPGIVEGLLSR 518

Query: 406 NDACVGQIIEVLIEKHGKEKG 426
            D  +G +I  + E  G+  G
Sbjct: 519 GDRRIGAVIRAVYEDGGRFDG 539


>gi|323170755|gb|EFZ56405.1| lipoic acid synthetase [Escherichia coli LT-68]
          Length = 315

 Score = 57.3 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 32/183 (17%), Positives = 68/183 (37%), Gaps = 12/183 (6%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V    G  ++   ++ V  A+ + D  +  + +   +    R    DG   
Sbjct: 88  CTRRCPFCDV--AHGRPVAPDANEPVKLAQTIADMALRYVVITSVD----RDDLRDGGAQ 141

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAH-GDLDVLMPYLHLPVQSGSDRILK 304
            F+D + ++ E    +++       R   D  +         +  +    V     RI +
Sbjct: 142 HFADCITAIREKSPQIKIETLVPDFRGRMDRALDILTATPPDVFNHNLENV----PRIYR 197

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
            +          ++++R +   P+I   S  +VG  GET+++    M  + + G      
Sbjct: 198 QVRPGADYNWSLKLLERFKEAHPEIPTKSGLMVGL-GETNEEIIEVMRDLRRHGVTMLTL 256

Query: 365 FKY 367
            +Y
Sbjct: 257 GQY 259


>gi|315181103|gb|ADT88017.1| radical SAM protein, family/Predicted Fe-S oxidoreductase [Vibrio
           furnissii NCTC 11218]
          Length = 286

 Score = 57.3 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 40/198 (20%), Positives = 74/198 (37%), Gaps = 11/198 (5%)

Query: 181 TIQEGCDKFCTFCVV-PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
           TI  G    CTFC V  +      ++S+   + +    +      +       + +    
Sbjct: 15  TIGRG---GCTFCNVASFADEASQAKSIEDQLTDRAGEVQRAKKYLAYFQAYTSTYAEVQ 71

Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
           +     +  +     ++I GL  +        D    L+  +        +L L +Q+ +
Sbjct: 72  V---LKSMYEQALKAADIVGLC-VGTRPDCVPDAVLELLAEYAQQG-FEIWLELGLQTAN 126

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
           D+ LK +NR H    Y +I  R R++   I + +  IVG P E  DD  AT++ V  +G 
Sbjct: 127 DQTLKRINRGHDFACYAEITRRARAL--GIKVCTHLIVGLPKEGRDDNLATLEQVLAVGT 184

Query: 360 AQAFSFKYSPRLGTPGSN 377
                       G+  + 
Sbjct: 185 DGIKLHGLHIVEGSTMAK 202


>gi|289548895|ref|YP_003473883.1| hypothetical protein Thal_1124 [Thermocrinis albus DSM 14484]
 gi|289182512|gb|ADC89756.1| conserved hypothetical protein [Thermocrinis albus DSM 14484]
          Length = 314

 Score = 57.3 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 35/199 (17%), Positives = 74/199 (37%), Gaps = 15/199 (7%)

Query: 188 KFCTFCVVPYTRGIEISRSL---SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK 244
             CT+C    TR   +S S+    Q+ +  ++  +     +      +         G+K
Sbjct: 46  GGCTYC-FAGTRPAHLSPSVPLKEQIEEGIKRARERYGKNLYFF---IYYQSYSNTYGDK 101

Query: 245 CTFSDLLYSLSEIKGLVRLRYT--TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
                +  +  E   +V +          +    L++++ +   L  ++   +QS +   
Sbjct: 102 EYLKKVYDTALEFDEVVGIDVGTRPDCAPEWVLDLLESYTE-KGLEVWVEYGLQSANFST 160

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           LK +NR H   ++   +  +R+ + ++ + +  I+G P E  +D   T  LV  +     
Sbjct: 161 LKFINRAHGVSDFVDAV--LRTKKRNLKVCAHVILGLPHEDREDMIETAKLVASLPIDGI 218

Query: 363 FSFKYSPRLGTPGSNMLEQ 381
                    GT    M EQ
Sbjct: 219 KIHPLHVIKGT---KMAEQ 234


>gi|73539792|ref|YP_294312.1| lipoyl synthase [Ralstonia eutropha JMP134]
 gi|123774178|sp|Q477G5|LIPA_RALEJ RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|72117205|gb|AAZ59468.1| Lipoate synthase [Ralstonia eutropha JMP134]
          Length = 331

 Score = 57.3 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 35/208 (16%), Positives = 71/208 (34%), Gaps = 12/208 (5%)

Query: 161 ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN 220
           E  S  + G    +G   F+ + + C + C FC V + R   +   +++  + AR +   
Sbjct: 79  EEASCPNIGECFGKGTATFMIMGDKCTRRCPFCDVGHGRPDPL--DVNEPGNLARTIAQL 136

Query: 221 GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKA 280
            +  + +   +    R    DG    + D +    E+    R+       R   D  +  
Sbjct: 137 KLNYVVITSVD----RDDLRDGGAQHYVDCISQTRELSPATRIEVLVPDFRGRLDKALDI 192

Query: 281 H-GDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGF 339
                  +M +    V     R+ K            +++   +   P++   S  +VG 
Sbjct: 193 LQACPPDVMNHNMETV----PRLYKQARPGADYAHSLKLLQEFKRRNPNVPTKSGLMVGL 248

Query: 340 PGETDDDFRATMDLVDKIGYAQAFSFKY 367
            GETD++    M  +           +Y
Sbjct: 249 -GETDEEILEVMRDMRAHDIDMLTIGQY 275


>gi|308233985|ref|ZP_07664722.1| Coproporphyrinogen dehydrogenase [Atopobium vaginae DSM 15829]
          Length = 424

 Score = 57.3 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 37/229 (16%), Positives = 74/229 (32%), Gaps = 13/229 (5%)

Query: 186 CDKFCTFCVV-PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE- 243
           C + C +C    +      S         A K   N +    +       + G G     
Sbjct: 28  CTQKCGYCDFASWPFKSTTSVPSE--YAAALKGQLNELKAANVCEDTETLYIGGGTPSAL 85

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
                D++    E    +R +    +P    D L+     L   +  +   VQS +   L
Sbjct: 86  PHELPDIIECACETCPTLREKSCEVNPESACDDLLSHM--LRQGINRVSCGVQSTNADEL 143

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           K++ R HT     + +  ++++    ++S D +   P +TDD +  ++  V         
Sbjct: 144 KALGRTHTPARALERLCTLKAM--GFSVSCDLMCAIPLQTDDSWLKSLHDVINCKVDHVS 201

Query: 364 SFKYSPRLGTP-----GSNMLEQVDENVKAERLLCLQKKLREQQVSFND 407
            +  +    T        +  +   E V+A R+      L        +
Sbjct: 202 IYPLTIEQSTAFWARYAHSHPKFNSEAVQAARMDIAHDVLESYGYKRYE 250


>gi|292486525|ref|YP_003529391.1| O2-independent coproporphyrinogen III oxidase [Erwinia amylovora
           CFBP1430]
 gi|292897762|ref|YP_003537131.1| oxygen-independent coproporphyrinogen III oxidase [Erwinia
           amylovora ATCC 49946]
 gi|291197610|emb|CBJ44704.1| oxygen-independent coproporphyrinogen III oxidase [Erwinia
           amylovora ATCC 49946]
 gi|291551938|emb|CBA18975.1| O2-independent coproporphyrinogen III oxidase [Erwinia amylovora
           CFBP1430]
          Length = 457

 Score = 57.3 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 41/236 (17%), Positives = 83/236 (35%), Gaps = 21/236 (8%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC        +++R   +  D    L+        L  Q   +    G  G   
Sbjct: 62  CHRLCYFC----GCNKQVTRQQHKADDYLAALMLEIAARARLFQQRTVSQMHWG--GGTP 115

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL-------MPYLHLPVQSG 298
           TF      +  +   +R  +  S   ++S  +     +LDVL          L + VQ  
Sbjct: 116 TF-LNKQQIRRLMACLRQHFHISDTAEISIEVDPREIELDVLDHLRAEGFNRLSMGVQDF 174

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           + ++ + +NR         ++ R R +   ++ + D I G P +T   F  T+  V ++ 
Sbjct: 175 NKQVQEKVNRVQDEKTIFALVARARQL-GFVSTNIDLIYGLPAQTPASFAFTLQKVVELD 233

Query: 359 YAQAFSFKYSPRLGTPGSN---MLEQVDENVKAERLLCLQKKLREQQVSFNDACVG 411
             +   F Y+       +       ++ +    ++L  LQ+ +           +G
Sbjct: 234 PDRLSIFNYAHMPALFAAQRKIREAELPDA--QQKLAILQQTIATLTAQDYQ-FIG 286


>gi|328944006|ref|ZP_08241471.1| coproporphyrinogen dehydrogenase [Atopobium vaginae DSM 15829]
 gi|327491975|gb|EGF23749.1| coproporphyrinogen dehydrogenase [Atopobium vaginae DSM 15829]
          Length = 419

 Score = 57.3 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 37/229 (16%), Positives = 74/229 (32%), Gaps = 13/229 (5%)

Query: 186 CDKFCTFCVV-PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE- 243
           C + C +C    +      S         A K   N +    +       + G G     
Sbjct: 23  CTQKCGYCDFASWPFKSTTSVPSE--YAAALKGQLNELKAANVCEDTETLYIGGGTPSAL 80

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
                D++    E    +R +    +P    D L+     L   +  +   VQS +   L
Sbjct: 81  PHELPDIIECACETCPTLREKSCEVNPESACDDLLSHM--LRQGINRVSCGVQSTNADEL 138

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           K++ R HT     + +  ++++    ++S D +   P +TDD +  ++  V         
Sbjct: 139 KALGRTHTPARALERLCTLKAM--GFSVSCDLMCAIPLQTDDSWLKSLHDVINCKVDHVS 196

Query: 364 SFKYSPRLGTP-----GSNMLEQVDENVKAERLLCLQKKLREQQVSFND 407
            +  +    T        +  +   E V+A R+      L        +
Sbjct: 197 IYPLTIEQSTAFWARYAHSHPKFNSEAVQAARMDIAHDVLESYGYKRYE 245


>gi|78044992|ref|YP_361242.1| biotin synthase [Carboxydothermus hydrogenoformans Z-2901]
 gi|77997107|gb|ABB16006.1| radical SAM domain protein [Carboxydothermus hydrogenoformans
           Z-2901]
          Length = 308

 Score = 57.3 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 27/204 (13%), Positives = 73/204 (35%), Gaps = 18/204 (8%)

Query: 176 VTAFLTIQEGCDKFCTFCVVPYTRGIE-ISR-SLSQVVDEARKLIDNGVCEITLLGQNVN 233
           +   +     C + C +C +          R S  +++  A+++   G+  + L      
Sbjct: 26  LRGIIEFSNYCRRNCLYCGLRRDNTKLGRYRMSPEEIIKRAKEVAALGIKTVVLQS---- 81

Query: 234 AWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHL 293
              G+    +      ++  + E+ G+                L KA  D         L
Sbjct: 82  ---GEDPYYKLKDLVGIVSRIKEL-GVYVTLSIGELSTHAYRELKKAGADR------YLL 131

Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
             ++ + ++ + ++   + +   + +  ++ +  ++   +  +VG PG+TDD     +  
Sbjct: 132 RHETANRKLYEVLHPDGSFFNRVRCLYALKDLGYEVGAGN--MVGLPGQTDDMLWEDLLF 189

Query: 354 VDKIGYAQAFSFKYSPRLGTPGSN 377
           ++K+         + P   TP + 
Sbjct: 190 MEKLQPEMVGIGPFIPHPDTPLAK 213


>gi|17228289|ref|NP_484837.1| hypothetical protein all0794 [Nostoc sp. PCC 7120]
 gi|17130139|dbj|BAB72751.1| all0794 [Nostoc sp. PCC 7120]
          Length = 544

 Score = 57.3 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 60/269 (22%), Positives = 109/269 (40%), Gaps = 31/269 (11%)

Query: 179 FLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK 238
            + +   C + C FC+  Y      + SL   +  A +        + LLG +V      
Sbjct: 227 MVEVVRSCPEMCRFCMASYLTLPFRTASLEGSLIPAIEKGLQVTNRLGLLGASVTQH--- 283

Query: 239 GLDGEKCTFSDLLYSLSEIK-GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQS 297
                   F  LL  +S+ K   VRL   +     +++ L K     D     L + V+S
Sbjct: 284 ------PEFETLLDYISQPKYEDVRLSIASVRTNTVTEQLAKTLAKRDT--RSLTIAVES 335

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPD--IAISSDFIVGFPGETDDDFRATMDLVD 355
           GS+++ + +N++       +II    + +     A+    +VG PGET +D  AT+ ++ 
Sbjct: 336 GSEKVRQIINKK---LHNDEIIQAAINAKAGGLTALKLYGMVGLPGETPEDLDATVAMMR 392

Query: 356 KIGYA------QAFSFKYSPRLGTP--GSNMLEQVDENVKAERLLCLQKKLREQQVSFN- 406
            I  A            + P+  TP     + +Q       +RL  LQK+L+ Q + F  
Sbjct: 393 SIKKAAPGLRLTLGCSTFVPKAHTPFQWYGVNKQ-----AEKRLQSLQKQLKPQGIDFRP 447

Query: 407 DACVGQIIEVLIEKHGKEKGKLVGRSPWL 435
           ++    II+ LI +  +   +L+  +   
Sbjct: 448 ESYNWSIIQALISRGDRRISQLLELTRDF 476


>gi|153949384|ref|YP_001402751.1| coproporphyrinogen III oxidase [Yersinia pseudotuberculosis IP
           31758]
 gi|186893702|ref|YP_001870814.1| coproporphyrinogen III oxidase [Yersinia pseudotuberculosis PB1/+]
 gi|152960879|gb|ABS48340.1| radical SAM domain/HemN domain protein [Yersinia pseudotuberculosis
           IP 31758]
 gi|186696728|gb|ACC87357.1| Radical SAM domain protein [Yersinia pseudotuberculosis PB1/+]
          Length = 437

 Score = 57.3 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 34/197 (17%), Positives = 72/197 (36%), Gaps = 10/197 (5%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C   CTFC   + +    S S  +  D   + +        L G  ++A    G      
Sbjct: 63  CATHCTFCG--FYQNPLQSGSTERYTDYLLRELSMEADSPLLQGGPIHAVYFGGGTPSAL 120

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRD-----MSDCLIKAHGDLDVLMPYLHLPVQSGSD 300
           +   L   +S+++  + L        +       D  I A   L+       + VQ+ + 
Sbjct: 121 SAQQLHSIISQLRKSLPLAPDCEITVEGRIFNFDDERIDAC--LEAGANRFSIGVQTFNT 178

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
           RI + M R+    +  + +  + + R   A+  D + G P +T + ++  + +V ++   
Sbjct: 179 RIRQRMGRKADRDQAIRFLTDL-ATRDRAAVVCDLMFGLPHQTPEIWQEDLAIVRQLPLD 237

Query: 361 QAFSFKYSPRLGTPGSN 377
               +  +    TP + 
Sbjct: 238 GVDLYALNLLPTTPLAK 254


>gi|317968700|ref|ZP_07970090.1| lipoyl synthase [Synechococcus sp. CB0205]
          Length = 289

 Score = 57.3 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 33/220 (15%), Positives = 69/220 (31%), Gaps = 11/220 (5%)

Query: 153 DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVD 212
           D  +    +  S  + G     G   FL +  GC + C +C +        +   ++   
Sbjct: 26  DLKLNTVCQEASCPNIGECFAGGTATFLIMGPGCTRACPYCDI-DFDKSVRNLDPTEPER 84

Query: 213 EARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
                   G+  + +   N    R    DG    F   + ++ +      +         
Sbjct: 85  LGEATARLGLKHVVITSVN----RDDLSDGGASQFVACIEAVRQRSPQTTIELLIPDFCG 140

Query: 273 MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAIS 332
             D L         ++ +    V     R+ K    +       +++ ++R   P     
Sbjct: 141 DWDALATVMEAGPDVLNHNIETV----PRLYKKARPQGIYERSLELLLQVRERWPKAYSK 196

Query: 333 SDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY-SPRL 371
           S  +VG  GE+D++   T+  + +         +Y SP  
Sbjct: 197 SGLMVGL-GESDEEVIETLLDLREHRVDIVTIGQYLSPGP 235


>gi|167042201|gb|ABZ06933.1| putative Radical SAM superfamily protein [uncultured marine
           crenarchaeote HF4000_ANIW93I24]
          Length = 536

 Score = 57.3 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 49/306 (16%), Positives = 104/306 (33%), Gaps = 31/306 (10%)

Query: 78  EKVYSFLGRIRNLKNSRI--KEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135
           EK+     + + +  + I  K+     VVV G  A    +    R   ++ VV  +    
Sbjct: 133 EKLSYVAMKFKKMCANIIQLKKKYHFKVVVGGNGAWELAKSDRMRIHGIDTVVVGEADEL 192

Query: 136 LPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
             +L      G      D          +I +        V + +    GC + C FC V
Sbjct: 193 ALDLFRDLEKG------DAPELLHCFVRNIQNIPEITAPTVNSLIEAMRGCGRGCDFCDV 246

Query: 196 PYTRGIEISR---SLSQVVDEARKLIDNGVCEITLLGQNVN--AWRGKGLDGEKCTFSDL 250
                 + S+    L ++  EA+  +D G   + L    +       +         + L
Sbjct: 247 -----NKRSKKDLPLERLQREAKINLDYGFDSVWLHSDEMLLYGCDNRDFYPNYDAITSL 301

Query: 251 LYSLSEIKG-LVRLRYTTSHPRDMSDCLIKAHGDLDVLMP-----YLHLPVQSGSDRILK 304
              L +I    V   + T         LI    +++ +         +L +++ +  ++K
Sbjct: 302 WKGLKDIGANFVGTTHMTFSGVVADPKLIHDISEINDMHKNGRWISTNLGIETVAPSLIK 361

Query: 305 SM----NRRHTAYEYRQIIDRIRSV--RPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
                  +  +  E+  ++     +  +     ++  I+G+P ET DD + T+D++    
Sbjct: 362 KHLGVKAKPFSTDEWGWVVREGAKILNKNHWFPAATIIIGWPDETPDDVQYTIDMMSDFR 421

Query: 359 -YAQAF 363
            +    
Sbjct: 422 AFDFRG 427


>gi|161527844|ref|YP_001581670.1| radical SAM protein [Nitrosopumilus maritimus SCM1]
 gi|160339145|gb|ABX12232.1| Radical SAM domain protein [Nitrosopumilus maritimus SCM1]
          Length = 526

 Score = 57.3 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 48/307 (15%), Positives = 109/307 (35%), Gaps = 44/307 (14%)

Query: 78  EKVYSFLGRIRNLKNSRI--KEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135
           EK+     + + +  S I  K+  D  VVV G  A    +    +   ++ VV  +    
Sbjct: 120 EKLSYVAMKFKKMCASIIQLKKKYDFKVVVGGNGAWELAKSDRMKIHGIDTVVVGEADEL 179

Query: 136 LPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
             +L +         +  +      E + +++G       + + +    GC + C FC V
Sbjct: 180 AVDLFQDLEKND-APELMHCFVRNLENIPVIEGPT-----INSLIEAMRGCGRGCDFCDV 233

Query: 196 PYTRGIEISR---SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLY 252
                 + S+    + ++  EA+  +D G   I L    +  +     D     F     
Sbjct: 234 -----NKRSKKDLPIDRLQHEAKTNLDYGFDSIWLHSDEMLLYGCDNRD-----FVPNRD 283

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL---------------HLPVQS 297
           +++++     L+   ++    +     A      LM  +               +L +++
Sbjct: 284 AITDL--WKSLKGLGANFIGTTHMTFSAVAADPTLMQQISHVNGQDQSGRWLATNLGIET 341

Query: 298 GSDRILKSM----NRRHTAYEYRQIIDRIRSVRP--DIAISSDFIVGFPGETDDDFRATM 351
            +  ++K       R  +  E+  ++     +        ++  I+G+P ET DD + T+
Sbjct: 342 VAPDMVKKHLGVKTRPFSTEEWGSVVREGAKILNENHWFPAATIIIGWPDETPDDIQYTI 401

Query: 352 DLVDKIG 358
           D++    
Sbjct: 402 DMMSDFR 408


>gi|160899439|ref|YP_001565021.1| radical SAM domain-containing protein [Delftia acidovorans SPH-1]
 gi|160365023|gb|ABX36636.1| Radical SAM domain protein [Delftia acidovorans SPH-1]
          Length = 831

 Score = 57.3 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 38/236 (16%), Positives = 74/236 (31%), Gaps = 32/236 (13%)

Query: 176 VTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDN--GVCEIT--LLGQ 230
           +   + I  GC   CTFC +    G  I SRS   ++ E   + D   G       L G 
Sbjct: 413 IRTSVNIMRGCFGGCTFCSITEHEGRIIQSRSEESIIQEVEDIRDKVKGFTGTISDLGGP 472

Query: 231 NVNAWR----------------------GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
             N +R                       + L  +      +      + G+ ++   + 
Sbjct: 473 TANMYRLGCKSPEIEAACRKPSCVFPGICQNLHTDHAPLVKIYRRARNLPGIKKILIGSG 532

Query: 269 HPRDMSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRRH--TAYEYRQIIDRI-R 323
              D++    +   +L    +  YL +  +      L  M +    +   ++Q+ ++   
Sbjct: 533 LRYDLAVKSPEYVKELVQHHVGGYLKIAPEHTESGPLTKMMKPGIGSYDRFKQMFEQFSE 592

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
                  +   FI   PG +D+D       + K G+       + P      + M 
Sbjct: 593 EAGKKQYLIPYFIAAHPGTSDEDMMNLAIWLKKNGFRADQVQTFYPSPMATATAMY 648


>gi|237727975|ref|ZP_04558456.1| oxygen-independent coproporphyrinogen III oxidase [Citrobacter sp.
           30_2]
 gi|226910232|gb|EEH96150.1| oxygen-independent coproporphyrinogen III oxidase [Citrobacter sp.
           30_2]
          Length = 459

 Score = 57.3 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 42/248 (16%), Positives = 90/248 (36%), Gaps = 20/248 (8%)

Query: 173 KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNV 232
           +R ++ ++ I   C K C FC        +  +   Q +D   + I          G++V
Sbjct: 52  ERPLSLYVHIPF-CHKLCYFCGCNKVVTRQQHK-ADQYLDVLEQEI--IHRAPLFAGRHV 107

Query: 233 NAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL----- 287
           +        G           +S +  L+R  +  +   ++S  +     +LDVL     
Sbjct: 108 SQLHW----GGGTPTYLNKAQISRLMSLLRGNFNFNDDAEISIEVDPREIELDVLDHLRA 163

Query: 288 --MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS-DFIVGFPGETD 344
                L + VQ  +  + + +NR         +++  R +      ++ D I G P +T 
Sbjct: 164 EGFNRLSMGVQDFNKEVQRLVNREQDEEFIFALLNHAREI--GFTSTNIDLIYGLPKQTP 221

Query: 345 DDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQV 403
           + F  T+  V ++   +   F Y+       +   ++  D     ++L  LQ+ +     
Sbjct: 222 ESFAFTLKRVAELNPDRLSVFNYAHLPTLFAAQRKIKDADLPSAQQKLDILQETISSLTE 281

Query: 404 SFNDACVG 411
           +     +G
Sbjct: 282 TGYQ-FIG 288


>gi|289825763|ref|ZP_06544931.1| hypothetical protein Salmonellentericaenterica_10121 [Salmonella
           enterica subsp. enterica serovar Typhi str. E98-3139]
          Length = 712

 Score = 57.3 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 52/297 (17%), Positives = 100/297 (33%), Gaps = 58/297 (19%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDN--GVCEIT--LLGQNVNA 234
           + I  GC   C+FC +    G  I SRS   +++E   + D   G   +   L G   N 
Sbjct: 380 INIMRGCFGGCSFCSITEHEGRIIQSRSEDSIINEIEAIRDTVPGFTGVISDLGGPTANM 439

Query: 235 WR----------------------GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
           +                          +D +     +L     E+KG+ ++   +    D
Sbjct: 440 YMLRCKSPRAEQTCRRLSCVYPDICPHMDTDHTPTINLYRRARELKGIKKILIASGVRYD 499

Query: 273 MSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRRH--TAYEYRQIIDRI-RSVRP 327
           ++    +   +L    +  YL +  +   +  L  M +    +   ++++ D   +    
Sbjct: 500 IAVEDPRYIKELASHHVGGYLKIAPEHTEEGPLSKMMKPGMGSYDRFKELFDLYSKQAGK 559

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGY--AQAFSFKYSPR-----LGTPGSNMLE 380
           +  +   FI   PG  D+D       + +  +   Q  +F  SP      +   G N L 
Sbjct: 560 EQYLIPYFISAHPGTRDEDMVNLALWLKRHRFRLDQVQNFYPSPLANSTTMYYTGKNPLG 619

Query: 381 QV---DENV---KAERLLCLQKKL-------------REQQVSFNDACVGQIIEVLI 418
           ++    E+V   K +R   L K L             +  +       +G   E L+
Sbjct: 620 KIGYKSEDVVVPKGDRQRRLHKALLRYHDPANWPLIRQALEAMGKKHLIGGRRECLV 676


>gi|146625|gb|AAA66345.1| LIPA protein [Escherichia coli str. K-12 substr. W3110]
          Length = 321

 Score = 57.3 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 32/183 (17%), Positives = 68/183 (37%), Gaps = 12/183 (6%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V    G  ++   ++ V  A+ + D  +  + +   +    R    DG   
Sbjct: 94  CTRRCPFCDV--AHGRPVAPDANEPVKLAQTIADMALRYVVITSVD----RDDLRDGGAQ 147

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAH-GDLDVLMPYLHLPVQSGSDRILK 304
            F+D + ++ E    +++       R   D  +         +  +    V     RI +
Sbjct: 148 HFADCITAIREKSPQIKIETLVPDFRGRMDRALDILTATPPDVFNHNLENV----PRIYR 203

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
            +          ++++R +   P+I   S  +VG  GET+++    M  + + G      
Sbjct: 204 QVRPGADYNWSLKLLERFKEAHPEIPTKSGLMVGL-GETNEEIIEVMRDLRRHGVTMLTL 262

Query: 365 FKY 367
            +Y
Sbjct: 263 GQY 265


>gi|187731162|ref|YP_001879297.1| lipoyl synthase [Shigella boydii CDC 3083-94]
 gi|238691675|sp|B2TTI9|LIPA_SHIB3 RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|187428154|gb|ACD07428.1| lipoic acid synthetase [Shigella boydii CDC 3083-94]
 gi|320175130|gb|EFW50242.1| Lipoate synthase [Shigella dysenteriae CDC 74-1112]
 gi|332097789|gb|EGJ02763.1| lipoic acid synthetase [Shigella boydii 3594-74]
          Length = 321

 Score = 57.3 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 32/183 (17%), Positives = 68/183 (37%), Gaps = 12/183 (6%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V    G  ++   ++ V  A+ + D  +  + +   +    R    DG   
Sbjct: 94  CTRRCPFCDV--AHGRPVAPDANEPVKLAQTIADMALRYVVITSVD----RDDLRDGGAQ 147

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAH-GDLDVLMPYLHLPVQSGSDRILK 304
            F+D + ++ E    +++       R   D  +         +  +    V     RI +
Sbjct: 148 HFADCITAIREKSPQIKIETLVPDFRGRMDRALDILTATPPDVFNHNLENV----PRIYR 203

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
            +          ++++R +   P+I   S  +VG  GET+++    M  + + G      
Sbjct: 204 QVRPGADYNWSLKLLERFKEAHPEIPTKSGLMVGL-GETNEEIIEVMRDLRRHGVTMLTL 262

Query: 365 FKY 367
            +Y
Sbjct: 263 GQY 265


>gi|325291152|ref|YP_004267333.1| iron-only hydrogenase maturation protein HydE [Syntrophobotulus
           glycolicus DSM 8271]
 gi|324966553|gb|ADY57332.1| iron-only hydrogenase maturation protein HydE [Syntrophobotulus
           glycolicus DSM 8271]
          Length = 358

 Score = 57.3 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 25/197 (12%), Positives = 70/197 (35%), Gaps = 16/197 (8%)

Query: 180 LTIQEGCDKFCTFCVVPYTR-GIEISR-SLSQVVDEARKLIDNGVCEITLLGQNVNAWRG 237
           + I   C + C +C +       E  R S S++++  +   + G     L         G
Sbjct: 55  IEISNYCRRNCLYCGIRGMNANAERYRLSESEILECCQDGYNLGYRTFVLQS-------G 107

Query: 238 KGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQS 297
           + +   K     L+  + ++     +  +       +   +   G    L+ +     ++
Sbjct: 108 EDMWYTKEILVGLVTRIKQLFPDAAVTLSIGERDIATYDALYKAGADRFLLRH-----ET 162

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
            S  + + ++   +  +   I+ +++ +     + + F+VG PG+ ++     +  + + 
Sbjct: 163 ASRELYEKLHPGMSYDDRMGILRKLKQI--GYQVGAGFMVGLPGQKEEHLAEDLLFLKEF 220

Query: 358 GYAQAFSFKYSPRLGTP 374
                    + P   TP
Sbjct: 221 QPEMIGIGPFIPHSETP 237


>gi|238909969|ref|ZP_04653806.1| hypothetical protein SentesTe_02385 [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
          Length = 697

 Score = 57.3 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 52/297 (17%), Positives = 100/297 (33%), Gaps = 58/297 (19%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDN--GVCEIT--LLGQNVNA 234
           + I  GC   C+FC +    G  I SRS   +++E   + D   G   +   L G   N 
Sbjct: 380 INIMRGCFGGCSFCSITEHEGRIIQSRSEDSIINEIEAIRDTVPGFTGVISDLGGPTANM 439

Query: 235 WR----------------------GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
           +                          +D +     +L     E+KG+ ++   +    D
Sbjct: 440 YMLRCKSPRAEQTCRRLSCVYPDICPHMDTDHTPTINLYRRARELKGIKKILIASGVRYD 499

Query: 273 MSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRRH--TAYEYRQIIDRI-RSVRP 327
           ++    +   +L    +  YL +  +   +  L  M +    +   ++++ D   +    
Sbjct: 500 IAVEDPRYIKELASHHVGGYLKIAPEHTEEGPLSKMMKPGMGSYDRFKELFDLYSKQAGK 559

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGY--AQAFSFKYSPR-----LGTPGSNMLE 380
           +  +   FI   PG  D+D       + +  +   Q  +F  SP      +   G N L 
Sbjct: 560 EQYLIPYFISAHPGTRDEDMVNLALWLKRHRFRLDQVQNFYPSPLANSTTMYYTGKNPLG 619

Query: 381 QV---DENV---KAERLLCLQKKL-------------REQQVSFNDACVGQIIEVLI 418
           ++    E+V   K +R   L K L             +  +       +G   E L+
Sbjct: 620 KIGYKSEDVVVPKGDRQRRLHKALLRYHDPANWPLIRQALEAMGKKHLIGGRRECLV 676


>gi|222100438|ref|YP_002535006.1| hypothetical protein CTN_1464 [Thermotoga neapolitana DSM 4359]
 gi|221572828|gb|ACM23640.1| Putative uncharacterized protein [Thermotoga neapolitana DSM 4359]
          Length = 319

 Score = 57.3 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 34/196 (17%), Positives = 67/196 (34%), Gaps = 11/196 (5%)

Query: 185 GCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK 244
           GC K C FC      G     SL  +     +               +  + G      +
Sbjct: 12  GCRKRCVFCDQVKATGQVKVPSLDDIAQLIEEYSKTSKEY------ELGFYGGTFTGLSE 65

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304
               + L  +     +  +R +T  P +++   ++     D  +  + + VQS SD +L+
Sbjct: 66  QKMEEYLSFVRRFPVVKSIRIST-RPDEVTVEKLEILKKYD--VETIEVGVQSFSDEVLE 122

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
           +  R +T+ E  +    I+ +     +S   +VG P  + +    +     + G      
Sbjct: 123 ASKRGYTSDEAEKACKLIKKM--GFRLSVHLMVGLPKSSREGEILSALRTIECGADLVRI 180

Query: 365 FKYSPRLGTPGSNMLE 380
                  GT    M+E
Sbjct: 181 HPTLVFEGTELHRMME 196


>gi|56415109|ref|YP_152184.1| hypothetical protein SPA3036 [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197364038|ref|YP_002143675.1| hypothetical protein SSPA2833 [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|56129366|gb|AAV78872.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197095515|emb|CAR61079.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
          Length = 723

 Score = 57.3 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 52/297 (17%), Positives = 100/297 (33%), Gaps = 58/297 (19%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDN--GVCEIT--LLGQNVNA 234
           + I  GC   C+FC +    G  I SRS   +++E   + D   G   +   L G   N 
Sbjct: 380 INIMRGCFGGCSFCSITEHEGRIIQSRSEDSIINEIEAIRDTVPGFTGVISDLGGPTANM 439

Query: 235 WR----------------------GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
           +                          +D +     +L     E+KG+ ++   +    D
Sbjct: 440 YMLRCKSPRAEQTCRRLSCVYPDICPHMDTDHTPTINLYRRARELKGIKKILIASGVRYD 499

Query: 273 MSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRRH--TAYEYRQIIDRI-RSVRP 327
           ++    +   +L    +  YL +  +   +  L  M +    +   ++++ D   +    
Sbjct: 500 IAVEDPRYIKELASHHVGGYLKIAPEHTEEGPLSKMMKPGMGSYDRFKELFDLYSKQAGK 559

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGY--AQAFSFKYSPR-----LGTPGSNMLE 380
           +  +   FI   PG  D+D       + +  +   Q  +F  SP      +   G N L 
Sbjct: 560 EQYLIPYFISAHPGTRDEDMVNLALWLKRHRFRLDQVQNFYPSPLANSTTMYYTGKNPLG 619

Query: 381 QV---DENV---KAERLLCLQKKL-------------REQQVSFNDACVGQIIEVLI 418
           ++    E+V   K +R   L K L             +  +       +G   E L+
Sbjct: 620 KIGYKSEDVVVPKGDRQRRLHKALLRYHDPANWPLIRQALEAMGKKHLIGGRRECLV 676


>gi|283779419|ref|YP_003370174.1| radical SAM domain-containing protein [Pirellula staleyi DSM 6068]
 gi|283437872|gb|ADB16314.1| Radical SAM domain protein [Pirellula staleyi DSM 6068]
          Length = 768

 Score = 57.3 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 38/268 (14%), Positives = 78/268 (29%), Gaps = 45/268 (16%)

Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSLS 208
           +D  Y +                   +   +TI  GC   CTFC +   +G  I SRS  
Sbjct: 306 MDVIYGLPYTRRPHPSYTEPIPAFGMIKDSVTIMRGCFGGCTFCSITTHQGRIIQSRSKD 365

Query: 209 QVVDEARKL-----------------------------IDNGVCEITLLGQNVNAWRGKG 239
            V+ E +++                             ++      + +   +    G  
Sbjct: 366 SVIGEIKRMTEDPKFKGTVSDIGGPTANMYQMTCSKPEVEEKCRRQSCVHPTICKLLGTS 425

Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL--DVLMPYLHLPVQS 297
            +       +L+    E+ G+ ++   +    D++    +   DL    +  +L +  + 
Sbjct: 426 HEP----LIELMKEARELPGIKKVLVASGIRMDLARRSPEYMKDLVQHHVGGHLKVAPEH 481

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA----ISSDFIVGFPGETDDDFRATMDL 353
               +L  M +  +  ++ +                 +   FI   PG   D        
Sbjct: 482 TDPDVLNKMRKP-SNDDFEKFTASFMKESKKAGKKQYVVPYFIASHPGSDLDAMINLAVF 540

Query: 354 VDKIGY--AQAFSFKYSPRLGTPGSNML 379
           + + GY   Q   F   P      + M 
Sbjct: 541 LKQNGYRPDQVQDFI--PAPFDVATAMY 566


>gi|170718149|ref|YP_001783539.1| lipoyl synthase [Haemophilus somnus 2336]
 gi|172044599|sp|Q0I1H8|LIPA_HAES1 RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|189046605|sp|B0UVP7|LIPA_HAES2 RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|168826278|gb|ACA31649.1| lipoic acid synthetase [Haemophilus somnus 2336]
          Length = 320

 Score = 57.3 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 33/235 (14%), Positives = 75/235 (31%), Gaps = 15/235 (6%)

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           + +    E  S  +       G   F+ +   C + C FC V    G  +     +    
Sbjct: 61  HGLHSVCEEASCPNLHECFNHGTATFMILGAICTRRCPFCDV--AHGKPLPPDPDEPKKL 118

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
           A  + D  +  + +   +    R    D     F++ +  + ++   +++       R  
Sbjct: 119 AETIQDMKLRYVVITSVD----RDDLPDRGAGHFAECVKEIRKLNPGIKIEILVPDFRGR 174

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
            +  ++   D     P +         R+ + +          +++   +++ P I   S
Sbjct: 175 IEQALEKLKDNP---PDVFNHNLENVPRLYREIRPGADYNWSLKLLKEFKTIFPHIPTKS 231

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP--RLGTPGSNMLEQVDENV 386
             +VG  GET+++    M  +   G       +Y    R   P +     V    
Sbjct: 232 GIMVGL-GETNEEILQVMQDLRDNGVTMLTLGQYLQPSRHHLPVARY---VPPEE 282


>gi|37523810|ref|NP_927187.1| hypothetical protein gll4241 [Gloeobacter violaceus PCC 7421]
 gi|35214815|dbj|BAC92182.1| gll4241 [Gloeobacter violaceus PCC 7421]
          Length = 513

 Score = 57.3 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 49/349 (14%), Positives = 108/349 (30%), Gaps = 38/349 (10%)

Query: 53  YERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQA 112
           +E       ADL +++   ++    +     +                + V V G    +
Sbjct: 57  FESEADWAWADLAIISAMMVQ---KDDFLHLIREAVR---------RGVKVAVGGPYPTS 104

Query: 113 EGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNR 172
             E+ L      + +V  +    +P+ L     G+       + +       +       
Sbjct: 105 IPEDALEA--GADYLVLDEGELTIPKFLAALAGGEGSGVFRAAEKPDVTLTPVPRFDLLE 162

Query: 173 KRGV-TAFLTIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVCEITLLGQ 230
                +  +    GC   C FC +    G +  +++  Q++ E + L+D G      +  
Sbjct: 163 LDAYDSMSVQFSRGCPFQCEFCDIIVLYGRKPRTKTPEQLLAELQALVDLGWNRSVFVVD 222

Query: 231 NVNAWRGKGLDGEKCTFSDLLYSLS----EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV 286
           +          G +     +L  L+    E     R     S      D L++    ++ 
Sbjct: 223 D-------NFIGNQRNVKLMLKQLAPWMQERGFPFRFTTEASINLAEDDELLELM--VEA 273

Query: 287 LMPYLHLPVQSGSDRILKSMNRR-HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDD 345
               + L +++  +  L    +  +      +   +I      + + + FI+GF  E   
Sbjct: 274 GFDSVFLGIETPDEESLTLTQKFQNNRKPLGESCLKITRA--GLRLLAGFIIGFDNEKAG 331

Query: 346 DFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCL 394
                +  V++     A         GT   + LE      K  RL+ +
Sbjct: 332 AGGRIIRFVEQTAIPDAMFSMLQALPGTALWSRLE------KENRLVAM 374


>gi|146296320|ref|YP_001180091.1| radical SAM domain-containing protein [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145409896|gb|ABP66900.1| Radical SAM domain protein [Caldicellulosiruptor saccharolyticus
           DSM 8903]
          Length = 615

 Score = 57.3 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 40/241 (16%), Positives = 88/241 (36%), Gaps = 28/241 (11%)

Query: 177 TAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAW 235
            A + +  GC + C FC           RS+ +V++ +++LI+N G  E++L+  + + +
Sbjct: 260 RAVVEVFRGCGRGCRFCQAGVIYRPVRFRSMGKVIEYSKELIENTGCNELSLISLSTSDY 319

Query: 236 RGKGLDGEKCTFSDLLYSLSEI--KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHL 293
                         L  ++ +      V +   +      S  L+K    +    P L  
Sbjct: 320 ---------PNIETLAKNILQFTEDKKVNISLPSLRLDSTSLELLKQIEKVRK--PTLTF 368

Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
             ++G+ R+   +N+     +    +           +   F++G P ETD+D     ++
Sbjct: 369 APEAGTQRLRDVINKNIKEEDIYSTVRLAFERGFQ-NVKLYFMLGLPTETDEDIIGIYEI 427

Query: 354 VDKIGYAQ------------AFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQ 401
              I                  +  + P+  TP      Q   +    ++  L++KL + 
Sbjct: 428 ARNIRQIYSDLGLKKRIRITVSTSFFVPKPHTP-FQWEPQDSIDEMKRKMKMLKEKLSKV 486

Query: 402 Q 402
           +
Sbjct: 487 K 487


>gi|325844576|ref|ZP_08168244.1| radical SAM domain protein [Turicibacter sp. HGF1]
 gi|325489055|gb|EGC91441.1| radical SAM domain protein [Turicibacter sp. HGF1]
          Length = 572

 Score = 57.3 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 45/242 (18%), Positives = 78/242 (32%), Gaps = 16/242 (6%)

Query: 146 GKRVVDTDYSVEDKFERLSIV--DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           G+ +   +  + D  E LS    +           ++    GC   C +C+         
Sbjct: 144 GELIKAAEAPILDPKEILSPFYFEEDIPHLPNRIQYIETSRGCPYSCQYCLAS-VDNKVR 202

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
              +  V +E R L+ +G      L +  N  +   L+       + L       G    
Sbjct: 203 YFDIENVKNEIRYLMKHGAKMFKFLDRTFNINKTYALNIFDFIIEEHL------PGTQFQ 256

Query: 264 RYTTSHPRDMSDCLIKAHGDL-DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
              T+    M   LI    +     +    + +QS  +   K + RR    +    I RI
Sbjct: 257 FEITADI--MPTELIDYLNEHAPEGLFRFEIGIQSTYELTNKLVKRRQNFDKLTTNILRI 314

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           +     I +  D I G P E  D F  + + V  +   +          GT    + +Q 
Sbjct: 315 KQG-GKIVLHLDLIAGLPEEPYDRFEQSFNDVFALRPEELQLGFLKMLRGT---GLRKQA 370

Query: 383 DE 384
           DE
Sbjct: 371 DE 372


>gi|311693531|gb|ADP96404.1| lipoic acid synthetase [marine bacterium HP15]
          Length = 350

 Score = 57.3 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 28/186 (15%), Positives = 66/186 (35%), Gaps = 17/186 (9%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V             +  + A+ +   G+  I L   +    R    DG   
Sbjct: 101 CTRACKFCAVDTGNPKGW-LDHEEPENTAKSVELMGLRYIVLTSVD----RDDLDDGGAA 155

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPV----QSGSDR 301
            ++  + ++       + R        ++        D++ ++           ++    
Sbjct: 156 HYAACVSAI-------KQRTPEVAVEALTPDFDAVMADVEKVVDSGLDVFAQNVETVKRL 208

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
             +  + R    +  ++++  +  RPD+   +  ++G  GET+++   TMD +  IG   
Sbjct: 209 TSRVRDPRAGYEKTLRVLEHAKKHRPDVLTKTSLMLGL-GETEEEILETMDDLRAIGVDI 267

Query: 362 AFSFKY 367
               +Y
Sbjct: 268 LTLGQY 273


>gi|295114805|emb|CBL35652.1| Coproporphyrinogen III oxidase and related Fe-S oxidoreductases
           [butyrate-producing bacterium SM4/1]
          Length = 395

 Score = 57.3 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 34/207 (16%), Positives = 72/207 (34%), Gaps = 28/207 (13%)

Query: 173 KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNV 232
           + G + ++ I   C   C +C          S  + +        ++    E+  + + +
Sbjct: 71  ENGYSLYIGIPF-CPTTCLYCSFT-------SFPIGKWQGRTGLYLNALFREMDYVAEKM 122

Query: 233 NAWRGKGLD----GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCL----------I 278
              +G+ LD    G     S     L  I   V   +     ++ +             +
Sbjct: 123 ---KGRPLDTVYFGGGTPTSLSPEDLDAILDKVERTFPMDQVKEFTVEAGRPDSITEEKL 179

Query: 279 KAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVG 338
           +   +  +    + +  Q+     L  + RRHT  + ++     R +  D  I+ D IVG
Sbjct: 180 QVLRNHGI--TRISINPQTMKQETLDLIGRRHTVEQVKETFRLARRMGFD-NINMDLIVG 236

Query: 339 FPGETDDDFRATMDLVDKIGYAQAFSF 365
            P E ++D R TM+ + ++        
Sbjct: 237 LPEEDEEDVRNTMEQIKELRPDSLTVH 263


>gi|300780712|ref|ZP_07090566.1| coproporphyrinogen III oxidase [Corynebacterium genitalium ATCC
           33030]
 gi|300532419|gb|EFK53480.1| coproporphyrinogen III oxidase [Corynebacterium genitalium ATCC
           33030]
          Length = 410

 Score = 57.3 bits (137), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 82/230 (35%), Gaps = 10/230 (4%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD--GE 243
           C   C +C        E   S +  +D   + ++ G     L G     + G G      
Sbjct: 49  CATRCGYCDFNTYTPSETETSYAAYLDALERELEMGAASTDLTGGVDTVFIGGGTPSLLG 108

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
                 +L ++    GL      T+     S       G        + L +QS S  +L
Sbjct: 109 ADGLGRILDTIKRTFGLKPDAEVTTESNPESTSPEYFEGLKRAGFTRVSLGMQSASTPVL 168

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDI-AISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           K ++R+HT    R +     + R     ++ D I G P ET+DD + ++D V   G    
Sbjct: 169 KILDRQHT--PGRAVAAAKEAQRAGFEHVNLDLIYGTPTETEDDVKKSLDHVLDAGMDHV 226

Query: 363 FSFKYSPRLGTPGSNMLEQ-----VDENVKAERLLCLQKKLREQQVSFND 407
            ++      GT  +  + +      DE+  A+R   +   L E    + +
Sbjct: 227 SAYSLIVEDGTAMARKINKGQLPAPDEDTYADRYELIASTLEEAGFGWYE 276


>gi|255691620|ref|ZP_05415295.1| Fe-S oxidoreductases family 2 [Bacteroides finegoldii DSM 17565]
 gi|260622689|gb|EEX45560.1| Fe-S oxidoreductases family 2 [Bacteroides finegoldii DSM 17565]
          Length = 544

 Score = 57.3 bits (137), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 50/338 (14%), Positives = 108/338 (31%), Gaps = 47/338 (13%)

Query: 99  GDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVED 158
               +++ G     + ++ L ++  VN V   +     P  L+     ++   +   +  
Sbjct: 84  PQCCIILGGPEFLGDNKDFLFKNKFVNGVFRGEGEEVFPLWLKVWNRSRKEWKSITGLCY 143

Query: 159 KFERLSIVDGGYNRKRGVTAFLT-----------------IQEGCDKFCTFCVVPYTRGI 201
             E     D G  R    +A ++                    GC   C FC V      
Sbjct: 144 LDESEEYQDNGIARVMNFSALVSPERSRFFNWSKPFVQLETTRGCFNTCAFC-VSGGEKP 202

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
             +  L  + +    +  +G+  + +L +  N    +  D       +L     +I    
Sbjct: 203 VRTIPLEAIRERLDNIHQHGIKNVRVLDRTFNYNNKRAKD-----LLNLFREYPDI---- 253

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
              +   HP  +S+ L      L   + +L   +QS  + +L+  +R     +  + +  
Sbjct: 254 -RFHLEIHPALLSEELKNELAALPDGLLHLEAGIQSLREPVLEQSHRIGKLSDALEGLKY 312

Query: 322 IRSVRPDIAISSDFIVGFP----GETDDDFRATMDL-VDKIGYAQAFSFKYSPRLGTPGS 376
           + S++ ++   +D I G P     E  +D R   +    +I              GT   
Sbjct: 313 LCSLK-NMETHADLIAGLPLYHLTEIFEDVRTLAEYGAGEIQLESLKL-----LPGTEMR 366

Query: 377 NMLEQV--------DENVKAERLLCLQKKLREQQVSFN 406
              E++           V   R + +++      +S  
Sbjct: 367 RRAEELGIQYSPLPPYEVLQTREISVEELQTAHYLSRL 404


>gi|167763430|ref|ZP_02435557.1| hypothetical protein BACSTE_01804 [Bacteroides stercoris ATCC
           43183]
 gi|167698724|gb|EDS15303.1| hypothetical protein BACSTE_01804 [Bacteroides stercoris ATCC
           43183]
          Length = 601

 Score = 57.3 bits (137), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 54/365 (14%), Positives = 117/365 (32%), Gaps = 68/365 (18%)

Query: 72  IREKAAEKVYSFLGRIRNL-KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGP 130
           +R+   ++    + ++  L K    +EG   L     C+   + +    R      +   
Sbjct: 186 VRKLKQQQPILDIPQLAYLTKEVLPQEGDITLFTHEECLKDKKKQASNFRH-----IEEE 240

Query: 131 QTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNR-------KRGVTAF---- 179
              Y    +L+       VV+  Y+   + E     D  Y R        + + A+    
Sbjct: 241 SNKYAASRILQAVGRQTVVVNPPYTPLTEAELDRSFDLPYTRLPHPKYKGKRIPAYDMIK 300

Query: 180 --LTIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVCEITLL---GQNVN 233
             + I  GC   C FC +   +G   +SRS   ++ E + +++    +  L    G + N
Sbjct: 301 FSVNIHRGCFGGCAFCTISAHQGKFIVSRSKESILKEVKAVMELPDFKGYLSDLGGPSAN 360

Query: 234 AWRGKGLDGEKCT----------------------FSDLLYSLSEIKGLVRLRYTTSHPR 271
            ++ +G D   C                         D+ +++  + G+ +         
Sbjct: 361 MYKMRGRDEAMCKKCKRPSCIHPKVCPNLNTDHSPLLDIYHAVDSLPGIKKSFIG----S 416

Query: 272 DMSDCLIKAHGDLDVLMPYLH----------------LPVQSGSDRILKSMNRRHTAYE- 314
            +   L+                              +  +  S+R+L  M +   +   
Sbjct: 417 GVRYDLLLHQSKDPKTNKSTQEYTRELIVRHVSGRLKVAPEHTSERVLSIMRKPPFSQFG 476

Query: 315 -YRQIIDRI-RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
            +++I DRI R       +   FI   PG  ++D      +  ++ +       ++P   
Sbjct: 477 EFKKIFDRINREEGLRQQLIPYFISSHPGCKEEDMAELAVITKRLDFHLEQVQDFTPTPM 536

Query: 373 TPGSN 377
           T  + 
Sbjct: 537 TVATE 541


>gi|153838826|ref|ZP_01991493.1| oxygen-independent coproporphyrinogen III oxidase [Vibrio
           parahaemolyticus AQ3810]
 gi|149747756|gb|EDM58652.1| oxygen-independent coproporphyrinogen III oxidase [Vibrio
           parahaemolyticus AQ3810]
          Length = 463

 Score = 57.3 bits (137), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 40/239 (16%), Positives = 79/239 (33%), Gaps = 27/239 (11%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C K C +C          S    + +D     I        L+G+ V         G   
Sbjct: 68  CHKLCYYCGCNKVITRH-SHKADEYLDVLEHEIRQ--RAALLVGRTVTQLH---FGGGTP 121

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDC---------LIKAHGDLDVLMPYLHLPVQ 296
           TF      ++ +  L+R  +T S   ++S           ++            L + VQ
Sbjct: 122 TF-LSEKQITRVMNLLRQEFTFSDDAEISIEVDPREIQITMLDHLRSEG--FNRLSIGVQ 178

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS-DFIVGFPGETDDDFRATMDLVD 355
             +  + K +NR         ++ R + +      ++ D I G P +T   F  T++ V 
Sbjct: 179 DFNKEVQKLVNREQDEEFIFAMVARAKEL--GFRSTNLDLIYGLPKQTKASFAKTLEQVL 236

Query: 356 KIGYAQAFSFKYSPRLGTPGSNM---LEQVDENVKAERLLCLQKKLREQQVSFNDACVG 411
           ++   +   F Y+       +      E + +    E++  LQ  +     +     +G
Sbjct: 237 EMQPGRLSVFNYAHMPQLFAAQRKIKDEDLPKAE--EKMAILQDTIATLTGAGYQ-FIG 292


>gi|153803696|ref|ZP_01958282.1| lipoic acid synthetase [Vibrio cholerae MZO-3]
 gi|124120766|gb|EAY39509.1| lipoic acid synthetase [Vibrio cholerae MZO-3]
          Length = 264

 Score = 57.3 bits (137), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 26/182 (14%), Positives = 62/182 (34%), Gaps = 10/182 (5%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V    G   +    +    A+ + D  +  + +   +    R    DG   
Sbjct: 88  CTRRCPFCDV--AHGRPNAPEAEEPKKLAQTIHDMKLKYVVITSVD----RDDLRDGGAQ 141

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
            F+D    +  +   +++       R   +  ++A  D     P +       + R+ + 
Sbjct: 142 HFADCNREIRALNPHIKIETLVPDFRGRMEVALEALKDNP---PDVFNHNLETAPRLYRK 198

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           +          +++ + +   P +   S  ++G  GET ++    +  +   G       
Sbjct: 199 VRPGANYKWSLELLRQFKEQHPHVPTKSGLMMGL-GETKEEIVEVLKDLRAHGVTMLTLG 257

Query: 366 KY 367
           +Y
Sbjct: 258 QY 259


>gi|326796659|ref|YP_004314479.1| radical SAM protein [Marinomonas mediterranea MMB-1]
 gi|326547423|gb|ADZ92643.1| Radical SAM domain protein [Marinomonas mediterranea MMB-1]
          Length = 642

 Score = 57.3 bits (137), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 35/196 (17%), Positives = 70/196 (35%), Gaps = 21/196 (10%)

Query: 180 LTIQEGCDKF-CTFCVVPYTRGIEISRSLSQV-VDEARKLIDNGVCEITLLGQNVNAWRG 237
           LTI  GC    C+FC V          + + + VD   +LI+         GQ       
Sbjct: 367 LTIAHGCYWRKCSFCDVSLDYIDRYDAAGADILVDRIEQLIEE-------TGQ-TGFHFV 418

Query: 238 KGLDGEKCTFSDLLYSLSE---IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP 294
                 K  F+     +     I     +R+     +  +    +   D   +       
Sbjct: 419 DEAAPPKALFALANRLIERGVVISWWGNIRF----EKTFTPERCQLLADSGCIAVSG--G 472

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           ++  SDR+LK M +  +  +  ++          I + +  + GFP +T+ +   ++++V
Sbjct: 473 LEVASDRLLKLMKKGVSVEQVARVTKGFSDA--GILVHAYLMYGFPTQTEQETIDSLEMV 530

Query: 355 DKIGYAQAFSFKYSPR 370
            ++  +  F   Y  R
Sbjct: 531 RQMMSSGCFQSAYWHR 546


>gi|295091160|emb|CBK77267.1| Coproporphyrinogen III oxidase and related Fe-S oxidoreductases
           [Clostridium cf. saccharolyticum K10]
          Length = 518

 Score = 57.3 bits (137), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 34/207 (16%), Positives = 72/207 (34%), Gaps = 28/207 (13%)

Query: 173 KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNV 232
           + G + ++ I   C   C +C          S  + +        ++    E+  + + +
Sbjct: 194 ENGYSLYIGIPF-CPTTCLYCSFT-------SFPIGKWQGRTGLYLNALFREMDYVAEKM 245

Query: 233 NAWRGKGLD----GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCL----------I 278
              +G+ LD    G     S     L  I   V   +     ++ +             +
Sbjct: 246 ---KGRPLDTVYFGGGTPTSLSPEDLDAILDKVERTFPMDQVKEFTVEAGRPDSITEEKL 302

Query: 279 KAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVG 338
           +   +  +    + +  Q+     L  + RRHT  + ++     R +  D  I+ D IVG
Sbjct: 303 QVLRNHGI--TRISINPQTMKQETLDLIGRRHTVEQVKETFRLARRMGFD-NINMDLIVG 359

Query: 339 FPGETDDDFRATMDLVDKIGYAQAFSF 365
            P E ++D R TM+ + ++        
Sbjct: 360 LPEEDEEDVRNTMEQIKELRPDSLTVH 386


>gi|291037425|ref|ZP_06568389.1| methyltransferase [Gluconacetobacter xylinus NBRC 3288]
          Length = 533

 Score = 57.3 bits (137), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 42/256 (16%), Positives = 84/256 (32%), Gaps = 22/256 (8%)

Query: 127 VVGPQTYYRLPELLERARFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQE 184
           V+G +    + + +   R G R  V +      D  +            + +   +    
Sbjct: 122 VLG-EAEEIMLDFIAAWRKGAREGVFEAPMGKTDVTKSPLPRFDLLKLDQYLHVGIQFSR 180

Query: 185 GCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVC-EITLLGQNVNAWRGKGLDG 242
           GC   C FC +    G    +++ +QV+ E   L   G    +  +  N+         G
Sbjct: 181 GCPFSCEFCDIIELYGRVPRTKTNAQVMAELDALYALGYRGHVDFVDDNLI--------G 232

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM----SDCLIKAHGDLDVLMPYLHLPVQSG 298
            K      L  L   +      +  S    +       L+++  D +     + + ++S 
Sbjct: 233 NKKALKKFLSDLKRWQNEKNFPFEFSTEASINLADDADLLRSLADTNFFA--IFVGIESP 290

Query: 299 SDRILKSMNRR-HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
               L  M ++ +T    +Q I+ I      I +++ FIVGF  E     +  +D ++  
Sbjct: 291 DTDSLVLMQKKQNTRRSLQQSIETIHKA--GIFVNAGFIVGFDSEKGSVAQGMIDCIEDT 348

Query: 358 GYAQAFSFKYSPRLGT 373
                          T
Sbjct: 349 SIPVCMVGLLYALPTT 364


>gi|283795476|ref|ZP_06344629.1| oxygen-independent coproporphyrinogen III oxidase 2 [Clostridium
           sp. M62/1]
 gi|291077141|gb|EFE14505.1| oxygen-independent coproporphyrinogen III oxidase 2 [Clostridium
           sp. M62/1]
          Length = 518

 Score = 57.3 bits (137), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 34/207 (16%), Positives = 72/207 (34%), Gaps = 28/207 (13%)

Query: 173 KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNV 232
           + G + ++ I   C   C +C          S  + +        ++    E+  + + +
Sbjct: 194 ENGYSLYIGIPF-CPTTCLYCSFT-------SFPIGKWQGRTGLYLNALFREMDYVAEKM 245

Query: 233 NAWRGKGLD----GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCL----------I 278
              +G+ LD    G     S     L  I   V   +     ++ +             +
Sbjct: 246 ---KGRPLDTVYFGGGTPTSLSPEDLDAILDKVERTFPMDQVKEFTVEAGRPDSITEEKL 302

Query: 279 KAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVG 338
           +   +  +    + +  Q+     L  + RRHT  + ++     R +  D  I+ D IVG
Sbjct: 303 QVLRNHGI--TRISINPQTMKQETLDLIGRRHTVEQVKETFRLARRMGFD-NINMDLIVG 359

Query: 339 FPGETDDDFRATMDLVDKIGYAQAFSF 365
            P E ++D R TM+ + ++        
Sbjct: 360 LPEEDEEDVRNTMEQIKELRPDSLTVH 386


>gi|323703839|ref|ZP_08115475.1| Radical SAM domain protein [Desulfotomaculum nigrificans DSM 574]
 gi|323531196|gb|EGB21099.1| Radical SAM domain protein [Desulfotomaculum nigrificans DSM 574]
          Length = 481

 Score = 57.3 bits (137), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 47/290 (16%), Positives = 90/290 (31%), Gaps = 28/290 (9%)

Query: 99  GDLLVVVAGCVAQAEGEEILRRSPIV-NVVVGPQTYYRLPELLERARFGKRVVDTDYSVE 157
              ++ + G       E +L   P++   + G +   +L +          VV       
Sbjct: 124 PQAVIRIGGIYPTLCPEHVLENIPVITRKIEGKELVQQLIKEGIGQGENTVVVGEVPEAS 183

Query: 158 DKFERLSIVDGGYNRKRGVT------AFLTIQEGCDKFCTFCVVPYTR--GIEISRSLSQ 209
           D    LS+           +      A L    GC   C++C        G    R    
Sbjct: 184 DLRTDLSLYTSSETNLNPNSNLTVQYAILHASRGCPYNCSYCAQKKINGPGRPRFRPAEV 243

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSH 269
           V++E  +            G N  A+    L   K  F  +L  + +  G+    +    
Sbjct: 244 VMEEIMEKHKR-------FGINQFAFYEDNLLYYKDNFCKILEQIVD-YGIKLELFAPEG 295

Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA-YEYRQIIDRIRSVRPD 328
               +  L             ++LP+++ +    K  NRRHT   ++   +         
Sbjct: 296 IEPRALDLNTLQLMRRAGFKKVYLPLETVNIESYKKWNRRHTGLDDFDNAVQLCSKA--G 353

Query: 329 IAISSD-----FIVGFPGETDDD-FRATMDLVDKIGYAQAFSFKYSPRLG 372
            ++ +       + G PGE+ +D    T+     +G        ++P  G
Sbjct: 354 FSLRNQEVNAFVLFGVPGESLEDVISTTLYASKTVG--SIIPMLFTPVPG 401


>gi|301099915|ref|XP_002899048.1| lipoic acid synthetase, mitochondrial precursor [Phytophthora
           infestans T30-4]
 gi|306755888|sp|D0NP70|LIPA_PHYIN RecName: Full=Lipoyl synthase, mitochondrial; AltName: Full=Lipoate
           synthase; Short=LS; Short=Lip-syn; AltName: Full=Lipoic
           acid synthase; Flags: Precursor
 gi|262104360|gb|EEY62412.1| lipoic acid synthetase, mitochondrial precursor [Phytophthora
           infestans T30-4]
          Length = 383

 Score = 57.3 bits (137), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 34/191 (17%), Positives = 66/191 (34%), Gaps = 14/191 (7%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C+FC V  +R       + +    A  +   G+  I     + + +   G      
Sbjct: 147 CTRGCSFCAVKTSRKP-KPLDIEEPNKVAEAIAAWGLDYIVFTSVDRDDYEDLGAGHFAK 205

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGD--LDVLMPYLHLPVQSGSDRIL 303
           T S L   L EI     +   T   +   + LI       LDV    +    ++      
Sbjct: 206 TVSTLRAKLPEIL----IECLTPDFQGHDN-LIDQVATSGLDVFAHNM----ETVERLQR 256

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           +  + R    +   +++R +   P +   +  ++G  GE ++D   T+  +   G     
Sbjct: 257 RVRDYRANYKQSLHVLERAKVAAPHLVTKTSLMLGV-GERNEDLFQTLRDLRNSGVDVVT 315

Query: 364 SFKYSPRLGTP 374
             +Y  R  T 
Sbjct: 316 FGQYL-RPSTK 325


>gi|253702439|ref|YP_003023628.1| hypothetical protein GM21_3853 [Geobacter sp. M21]
 gi|251777289|gb|ACT19870.1| conserved hypothetical protein [Geobacter sp. M21]
          Length = 311

 Score = 57.3 bits (137), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 33/202 (16%), Positives = 68/202 (33%), Gaps = 15/202 (7%)

Query: 183 QEGCDKFCTFC--VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL 240
            EGC     FC      + GI     ++Q ++ A++++         +            
Sbjct: 39  TEGCI----FCGGKGSGSYGILQGVGVAQQLEHAKEVMVRKYKAARFIA---YFQSYSNT 91

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYT--TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
                    L      +  +V L          + +  L+ ++        +L L +QS 
Sbjct: 92  YAPVERLKALYDEALSVPDVVGLIVGTRPDCLPEATLDLLASYARRTYF--WLELGLQSH 149

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
            DR L ++ R H    +   +   R     I + +  I+G PGE+ ++  +  D +++ G
Sbjct: 150 LDRTLSAIGRGHDRACFESALKGCRER--GIRVCAHVILGLPGESREEMLSCADYLNRQG 207

Query: 359 YAQAFSFKYSPRLGTPGSNMLE 380
                        GT  +   +
Sbjct: 208 VDGVKVHLLHVMRGTRLAEQYD 229


>gi|294792850|ref|ZP_06757997.1| radical SAM domain protein [Veillonella sp. 6_1_27]
 gi|294456749|gb|EFG25112.1| radical SAM domain protein [Veillonella sp. 6_1_27]
          Length = 575

 Score = 57.3 bits (137), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 43/267 (16%), Positives = 99/267 (37%), Gaps = 40/267 (14%)

Query: 175 GVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA 234
           G    + +  GC + C FC+  Y   +   R L  + +   +    G     +       
Sbjct: 247 GAMYIIEVARGCGRHCRFCMAGYCFRVPRVRPLDILKEGVERAEKLGKKVGLMGA----- 301

Query: 235 WRGKGLDGEKCTFSDLLYSLSEIK-GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHL 293
                       + ++   ++ I+   +R    +     ++  ++    D       + +
Sbjct: 302 --------AISDYPEVDELVNYIRSKDMRYSCASLRADSLTQAVVDGLADSGQ--KTITI 351

Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA---- 349
             ++GS+R+ + +N+  +  E+ Q    + +      +    ++G P ETD+D  A    
Sbjct: 352 APETGSERLRRVINKGIS-EEHLQNAATLSAKSGIQHMRLYIMIGLPTETDEDIEAIVGL 410

Query: 350 ---TMDLVDKIGYA---QAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQV 403
              T   ++K+G           + P+  TP   M    ++ V  ++L  ++K L++   
Sbjct: 411 AERTQAHMEKVGCKGRLTLSINPFIPKPFTPFQWMAMD-NQKVVEKKLQYIKKALQKN-- 467

Query: 404 SFNDACVGQIIEVLIEKHGKEKGKLVG 430
                   + IEVL+E    ++  + G
Sbjct: 468 --------RRIEVLVE--SPKEAYIQG 484


>gi|289625784|ref|ZP_06458738.1| lipoyl synthase [Pseudomonas syringae pv. aesculi str. NCPPB3681]
 gi|289648430|ref|ZP_06479773.1| lipoyl synthase [Pseudomonas syringae pv. aesculi str. 2250]
 gi|330867180|gb|EGH01889.1| lipoyl synthase [Pseudomonas syringae pv. aesculi str. 0893_23]
 gi|330871068|gb|EGH05777.1| lipoyl synthase [Pseudomonas syringae pv. aesculi str. 0893_23]
          Length = 335

 Score = 57.3 bits (137), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 34/215 (15%), Positives = 74/215 (34%), Gaps = 12/215 (5%)

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           + +    E  S  + G     G   F+ + + C + C FC V + R   +   +++    
Sbjct: 75  HKLHSVCEEASCPNLGECFSGGTATFMIMGDICTRRCPFCDVGHGRPKPL--DVNEPKSL 132

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI-KGLVRLRYTTSHPRD 272
           A  + D  +  + +   +    R    DG    F+D +  +  +  G+        +   
Sbjct: 133 AIAIADLRLKYVVITSVD----RDDLRDGGAQHFADCIREIRLLSPGVQLETLVPDYRGR 188

Query: 273 MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAIS 332
           M   L     +   +  +    V     R+ K+            ++ R + + P +   
Sbjct: 189 MDVALEITAAEPPDVFNHNLETV----PRLYKAARPGSDYQWSLTLLQRFKQMVPHVPTK 244

Query: 333 SDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           S  ++G  GETD++    M  + +         +Y
Sbjct: 245 SGLMLGL-GETDEEVIEVMQRMHEHDIDMLTLGQY 278


>gi|239835349|ref|YP_002956021.1| hypothetical protein DMR_p1_00150 [Desulfovibrio magneticus RS-1]
 gi|239794440|dbj|BAH73431.1| hypothetical protein [Desulfovibrio magneticus RS-1]
          Length = 481

 Score = 57.3 bits (137), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 39/274 (14%), Positives = 91/274 (33%), Gaps = 27/274 (9%)

Query: 126 VVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEG 185
           ++ G     R   L +     +     D       +R  I    Y R+   +       G
Sbjct: 122 LLTGNNKESRNIFLRKDPSPVEFDHFVDLDAMPFPDRDIIYSHDYVRRMNPSKTFISGRG 181

Query: 186 CDKFCTFC-------VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK 238
           C   CT+C       +   +  +   +S+  +++E R +      ++ +   +       
Sbjct: 182 CPFSCTYCFNHRYNKLFKNSGHVLRKKSVDYILEEIRLVRGKYPLKLVIFIDDT------ 235

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
            +  +K  F        E+               M++ + KA  +   +M  ++  ++SG
Sbjct: 236 FILNKKWLFEFCERFPRELGVPYSC---NIRANLMNEDVAKALSESGCVM--VNWSIESG 290

Query: 299 SDRILKSMNRRH-TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
           +D    ++ +R+ T  +       +   +  I      ++G PGE  +    T++L    
Sbjct: 291 NDFFRNTVMKRNMTREQILNTAHLLNKYK--INHRIGNVIGLPGEKLEQIFETLELNIAA 348

Query: 358 GYAQAFSFKYSPRLGTPGSNMLE------QVDEN 385
               A +  + P  G   +   +      ++ E 
Sbjct: 349 NPTLALANIFVPFPGLEMTRYAQENGYFSEIPEE 382


>gi|218887462|ref|YP_002436783.1| oxygen-independent coproporphyrinogen III oxidase [Desulfovibrio
           vulgaris str. 'Miyazaki F']
 gi|218758416|gb|ACL09315.1| oxygen-independent coproporphyrinogen III oxidase [Desulfovibrio
           vulgaris str. 'Miyazaki F']
          Length = 448

 Score = 57.3 bits (137), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 36/214 (16%), Positives = 69/214 (32%), Gaps = 23/214 (10%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C +C          S  +       R  ++  + E+ L G  +       +     
Sbjct: 10  CRRKCRYCAFH-------SLEMGAA-TVVRDYVETLLRELALWGDRMGGVPVTSIFFGGG 61

Query: 246 TFSDLLYS-----LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMP----YLHLPVQ 296
           T S L        L  +     ++       + +   +    +L  L+      L + VQ
Sbjct: 62  TPSLLPARTIGTILDRVGKAFAVQPGAEISMEANPESLTRPSELRTLLKVGVNRLSMGVQ 121

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
              D +L ++ R H A E       +R+      +  D I G PG+T   +   +  V +
Sbjct: 122 CLDDAMLHTLGRPHRAREALDAFRAVRAAGFQ-NVGMDLIWGLPGQTLRQWMQQLKEVVR 180

Query: 357 IGYAQAFSFKYSPRLGTP-----GSNMLEQVDEN 385
           +       +  +   GTP      +  L+   E 
Sbjct: 181 LRPDHLSCYGLTLEPGTPLEDDCATGRLDLPPER 214


>gi|59712730|ref|YP_205506.1| Fe-S oxidoreductase [Vibrio fischeri ES114]
 gi|59480831|gb|AAW86618.1| predicted Fe-S oxidoreductase [Vibrio fischeri ES114]
          Length = 313

 Score = 57.3 bits (137), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 2/88 (2%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +L L +Q+ +D+ LK +NR H    Y  I  + RS+   I + +  I+G PG+T DD R 
Sbjct: 141 WLELGLQTANDKTLKRINRGHDFACYDAITRKARSL--GIKVCTHLIIGLPGDTRDDNRQ 198

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
           T+D V   G             G+  + 
Sbjct: 199 TLDKVLATGTDGIKLHPLHIVEGSTLAK 226


>gi|325958472|ref|YP_004289938.1| Radical SAM domain-containing protein [Methanobacterium sp. AL-21]
 gi|325329904|gb|ADZ08966.1| Radical SAM domain protein [Methanobacterium sp. AL-21]
          Length = 515

 Score = 57.3 bits (137), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 45/336 (13%), Positives = 118/336 (35%), Gaps = 58/336 (17%)

Query: 77  AEKVYSFLGRIRN----LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT 132
            +  ++ L  ++     +K     +   L++    C +       +  +  V++ +  + 
Sbjct: 81  EQDYFNVLKMLKEGGVPVKKQERTDQDPLVIAGGPCASSNP----IPMTDFVDLFIVGEA 136

Query: 133 YYRLPELLERARF---------------------GKRVVDTDYSVEDKFERLSIVDGGYN 171
              + E +++                            + T   +++    L  V    +
Sbjct: 137 EAVMDEFIDKCLELDDPRKNLEEFLNIQGVYLADNPVKMVTVNDLKNACHPLRQVFPETD 196

Query: 172 RKRGVTAF-----LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEI 225
            K  + AF     L +  GC + C FC+            L +++  A +     G+ ++
Sbjct: 197 NKDYIPAFGRSFLLEVSRGCTRGCRFCMAGCIFRPRREMPLKELLKIAEEGCQKTGLKKV 256

Query: 226 TLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLD 285
            L+G  V+ +             +L   L E+   +++   +     +++ L++      
Sbjct: 257 ALIGAAVSDY---------SKIEELCAGLHEMG--LQVTTPSLRIESITENLLEILKASG 305

Query: 286 VLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDD 345
             +  + +  +S +  + K+ N+  T       I +  +++ ++ +   F++G P ET +
Sbjct: 306 --LKTITIAPES-TWEVRKAANKFITDESVESTIKK--AIKHELNVKLYFMIGLPTETTE 360

Query: 346 DFRATMDLVDKI-------GYAQAFSFKYSPRLGTP 374
           D    +  VDK+          +     + P+  TP
Sbjct: 361 DMEDLVSYVDKLIKLGSRRNQIKLSVNPFIPKPHTP 396


>gi|325270270|ref|ZP_08136877.1| coproporphyrinogen dehydrogenase [Prevotella multiformis DSM 16608]
 gi|324987571|gb|EGC19547.1| coproporphyrinogen dehydrogenase [Prevotella multiformis DSM 16608]
          Length = 422

 Score = 57.3 bits (137), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 43/247 (17%), Positives = 84/247 (34%), Gaps = 26/247 (10%)

Query: 186 CDKFCTFCVVPYTRGIEI--SRSLSQVVDEA---RKLIDNGVCEITLLGQNVNAWRGKGL 240
           C   C +C    T   E   +R + +   +A      +  G  +     +  + + G G 
Sbjct: 11  CASRCIYCGFYSTVPSERVGARPVEERYVDALCHEMELKEGGRDGGAPAELSSIYLGGGT 70

Query: 241 DGEK--CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLD-----VLMPYLH- 292
             +    +   L  ++  +                +  +                  LH 
Sbjct: 71  PSQLSFPSLQKLFRTIGRVYRTENRWGGGGGRSGSAAPMEITMECNPDDVTVAFARSLHS 130

Query: 293 -------LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDD 345
                  +  Q+ SDR L+ ++RRHTA E    + R+R       IS D + GFPGET +
Sbjct: 131 LPVNRISMGAQTFSDRRLRFLHRRHTAEEVGTAVSRLREAGIG-NISVDLMFGFPGETLE 189

Query: 346 DFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML-----EQVDENVKAERLLCLQKKLRE 400
           ++   +D +  +      ++      GTP   +L      ++D+ +       L  +L +
Sbjct: 190 EWNEDIDRLLGLDVEHVSAYSLMYEEGTPLHRLLRAGKVREIDDELYRRMYDTLVDRLGD 249

Query: 401 QQVSFND 407
                 +
Sbjct: 250 AGYEHYE 256


>gi|317474014|ref|ZP_07933293.1| radical SAM protein [Bacteroides eggerthii 1_2_48FAA]
 gi|316909856|gb|EFV31531.1| radical SAM protein [Bacteroides eggerthii 1_2_48FAA]
          Length = 601

 Score = 57.3 bits (137), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 51/311 (16%), Positives = 103/311 (33%), Gaps = 64/311 (20%)

Query: 126 VVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNR-------KRGVTA 178
            +      Y    +L+       VV+  Y    + E     D  Y R        + + A
Sbjct: 236 HIEEESNKYAASRILQTIGKQTVVVNPPYPPLTEAELDRSFDLPYTRLPHPKYKGKRIPA 295

Query: 179 F------LTIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLI---DNGVCEITLL 228
           +      + I  GC   C FC +   +G   +SRS   ++ E + ++   D       L 
Sbjct: 296 YDMIKFSVNIHRGCFGGCAFCTISAHQGKFIVSRSKESILKEVKAVMGLPDFKGYLSDLG 355

Query: 229 GQNVNAWRGKGLDGEKCT----------------------FSDLLYSLSEIKGLVRLRY- 265
           G + N ++ +G D   C                         D+ +++  + G+ +    
Sbjct: 356 GPSANMYKMRGNDENICKKCKRPSCIHPKVCPNLNTDHGPLLDIYHAVDSLPGIKKSFIG 415

Query: 266 ----------------TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
                           T  + ++ +  LI  H     +   L +  +  S+R+L  M + 
Sbjct: 416 SGVRYDLLLHQSKDAGTNKNTQEYTRELIARH-----VSGRLKVAPEHTSERVLNIMRKP 470

Query: 310 HTAYE--YRQIIDRI-RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
             +    +++I DRI R       +   FI   PG  ++D      +  ++ +       
Sbjct: 471 PFSQFGEFKKIFDRINREEGLRQQLIPYFISSHPGCKEEDMAELAVITKRLDFHLEQVQD 530

Query: 367 YSPRLGTPGSN 377
           ++P   T  + 
Sbjct: 531 FTPTPMTVATE 541


>gi|307129092|ref|YP_003881108.1| putative Fe-S oxidoreductase [Dickeya dadantii 3937]
 gi|306526621|gb|ADM96551.1| predicted Fe-S oxidoreductase [Dickeya dadantii 3937]
          Length = 309

 Score = 57.3 bits (137), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 2/71 (2%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +L L +QS  DR L+ +NR H    YRQ   R R+    + + S  IVG PGE+++   +
Sbjct: 141 WLELGLQSAHDRTLRRINRGHDFACYRQTAQRARAR--GLKVCSHLIVGLPGESEEHCLS 198

Query: 350 TMDLVDKIGYA 360
           T+  V + G  
Sbjct: 199 TLRQVVEAGVD 209


>gi|254507472|ref|ZP_05119606.1| radical SAM protein [Vibrio parahaemolyticus 16]
 gi|219549542|gb|EED26533.1| radical SAM protein [Vibrio parahaemolyticus 16]
          Length = 314

 Score = 57.3 bits (137), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 29/105 (27%), Positives = 46/105 (43%), Gaps = 11/105 (10%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +L L +Q+ ++  LK +NR H    Y +I  R R++   I + +  IVG P E+ +D  +
Sbjct: 141 WLELGLQTANNDTLKRINRGHDFECYAEITQRARAL--GIKVCTHLIVGLPKESREDNIS 198

Query: 350 TMDLVDKIGYAQAFSFKYSPRLG-TPGSNMLEQVDENVKAERLLC 393
           T+D V ++G             G T             KA RL  
Sbjct: 199 TLDKVLQVGTDGIKLHGLHIVEGSTMAKAW--------KAGRLQA 235


>gi|163786574|ref|ZP_02181022.1| hypothetical protein FBALC1_15352 [Flavobacteriales bacterium
           ALC-1]
 gi|159878434|gb|EDP72490.1| hypothetical protein FBALC1_15352 [Flavobacteriales bacterium
           ALC-1]
          Length = 651

 Score = 57.3 bits (137), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 60/361 (16%), Positives = 122/361 (33%), Gaps = 74/361 (20%)

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAF------LTIQEGCDKFCTFCVVPYTRGIEI- 203
           + D S +  + RL      YN++  + AF      + I  GC   C+FC +   +G  I 
Sbjct: 280 EIDASFDLPYTRLP--HPKYNKRGPIPAFEMIKFSINIHRGCFGGCSFCTISAHQGKFIA 337

Query: 204 SRSLSQVVDEARKLIDNGVCEITLL---GQNVNAWRGKG--------------------- 239
           SRS   ++ E   + +    +  L    G + N ++ KG                     
Sbjct: 338 SRSKESILKEVDTVANMSDFKGYLSDIGGPSANMYQMKGKVQSICDKCVAPSCISPVICS 397

Query: 240 -LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM----------SDCLIKAHGD--LDV 286
            LD      ++L  ++     + +    +    DM             L     +     
Sbjct: 398 NLDTSHKPLTELYQAVDSHPKVKKSFIGSGIRHDMLVPEFNKNADPKELDDYTEEVMTKH 457

Query: 287 LMPYLHLPVQSGSDRILKSMNRRHTAYE--YRQIIDRIRSVRPDIAISS--DFIVGFPGE 342
           +   L +  +  SD +LK M +    Y   +++  D+I +++  + +     FI   P  
Sbjct: 458 VSGRLKVAPEHTSDPVLKLMRKPSFKYFHKFKERFDKI-NIKKGLKLQLIPYFISNHPAC 516

Query: 343 TDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML---------EQVDENVKAERLLC 393
             +D          +G+       ++P   T  + +          ++V+  +  +    
Sbjct: 517 EVEDMANLAAETKDMGFQLEQVQGFTPTPMTVATVIYYSGYHPYTLKKVNTPITKKEKDE 576

Query: 394 LQKKLREQQVSFNDACVGQI---------IEVLI----EKHGKEKGKLVGRSPWLQSVVL 440
            Q +        N A + +          ++VL+    EK  K K K   ++ +  +V  
Sbjct: 577 -QHRFFFWYKDENKAWIKKTLNKLGRQDLLDVLLPKKEEKWRKNKPKGEAKNTFNDAVPF 635

Query: 441 N 441
           N
Sbjct: 636 N 636


>gi|84498587|ref|ZP_00997350.1| hypothetical protein JNB_20383 [Janibacter sp. HTCC2649]
 gi|84381120|gb|EAP97005.1| hypothetical protein JNB_20383 [Janibacter sp. HTCC2649]
          Length = 662

 Score = 57.3 bits (137), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 58/324 (17%), Positives = 107/324 (33%), Gaps = 55/324 (16%)

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
             V+D D     K   + + +  + R       + I  GC + C FC           RS
Sbjct: 247 HTVMDLDAWPYPKQPLVPLAESVHERMS-----VEIFRGCTRGCRFCQAGMITRPVRERS 301

Query: 207 LSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI-KGLVRLR 264
           ++ + +   K +   G  E+ LL  +           +    ++L   L++  +G     
Sbjct: 302 ITGIGEMVEKGLAATGFEEVGLLSLSS---------ADHSEIAELTKGLADRYEGTQTGL 352

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
              S   D  +  +      +     L    + GS+RI K +N+  T  +  + +     
Sbjct: 353 SLPSTRVDAFNIDLANELTRNGRRSGLTFAPEGGSERIRKVINKMVTEEDLIKTVSAAYG 412

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKI---------GYAQAFSFK---YSPRLG 372
                 +   F+ G P ETD+D     +L  K+               +     + P+  
Sbjct: 413 AGWR-NVKLYFMCGLPTETDEDVLQIAELAKKVIETGRQVSGRKDIRCTVSIGGFVPKPH 471

Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLR---------------------EQQVSFNDACVG 411
           TP    + Q+  +    RL  L+  +R                     E  +S  D  VG
Sbjct: 472 TP-FQWVAQLSADETDARLTKLRDAIRADKRFGSSIGFRYHDGKPGIVEGLLSRGDRRVG 530

Query: 412 QIIEVLIEKHGKEKGKLVGRSPWL 435
            +    IE+  ++ G+  G S   
Sbjct: 531 AV----IEQVWRDGGRFDGWSEHF 550


>gi|319783394|ref|YP_004142870.1| lipoic acid synthetase [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317169282|gb|ADV12820.1| lipoic acid synthetase [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 321

 Score = 57.3 bits (137), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 75/220 (34%), Gaps = 11/220 (5%)

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
           R +   + +    E     + G   ++    F+ + E C + C FC V    GI  +   
Sbjct: 48  REIVKSHKLVTVCEEAGCPNIGECWEKKHATFMIMGEICTRACAFCNV--ATGIPTALDP 105

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
            +    A  +   G+  + +   +    R    DG    F++++ ++     L  +   T
Sbjct: 106 DEPARVAHAVKQMGLTHVVITSVD----RDDLADGGAQHFAEVIRAIRAATPLTTIEILT 161

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
                    L         +  +    V   S+ +      R+  +   +++ R++ + P
Sbjct: 162 PDFLRKDGALEIVVAAKPDVFNHNLETV--PSNYLTVRPGARY--FHSIRLLQRVKELDP 217

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
            I   S  +VG  GE  ++    MD +           +Y
Sbjct: 218 SIFTKSGIMVGL-GEERNEILQLMDDLRSANVDFMTIGQY 256


>gi|312196045|ref|YP_004016106.1| oxygen-independent coproporphyrinogen III oxidase [Frankia sp.
           EuI1c]
 gi|311227381|gb|ADP80236.1| oxygen-independent coproporphyrinogen III oxidase [Frankia sp.
           EuI1c]
          Length = 438

 Score = 57.3 bits (137), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 30/155 (19%), Positives = 56/155 (36%), Gaps = 7/155 (4%)

Query: 225 ITLLGQNVNAWRGKGLDGEKCTF---SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAH 281
             +LG            G   T    +DL   L+ +     LR       + +   + A 
Sbjct: 107 ARVLGDGTPPVDTVFFGGGTPTLLPPADLGALLAAVDDTFGLRPGAEVTTEANPESVDAV 166

Query: 282 GDLD---VLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVG 338
                       +   +QS    +L +++RRHT      ++   R    +  +S D I G
Sbjct: 167 ALEQLRAAGFTRISFGMQSARPHVLATLDRRHTPGRLPDVVCWARKAGFE-QVSVDLIYG 225

Query: 339 FPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
            PGE+D D+ A++    ++      ++  +   GT
Sbjct: 226 APGESDRDWAASLAAAIELAPDHVSAYALTVEDGT 260


>gi|262196968|ref|YP_003268177.1| hypothetical protein Hoch_3784 [Haliangium ochraceum DSM 14365]
 gi|262080315|gb|ACY16284.1| Protein of unknown function DUF2344 [Haliangium ochraceum DSM
           14365]
          Length = 971

 Score = 57.3 bits (137), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 38/218 (17%), Positives = 70/218 (32%), Gaps = 11/218 (5%)

Query: 130 PQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKF 189
           P+T   +      AR   RV        D +   S     Y       A + I  GC + 
Sbjct: 212 PETDMIVVGAPRDARAPARVRRGVVRDIDAYPFPSDTPVPYAEAVFDRAAVEIARGCTEG 271

Query: 190 CTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFS 248
           C FC           RS   +       ++  G  E  L                     
Sbjct: 272 CRFCQAGMIYRPVRERSPESIAKSVIDSVEKAGYDETALT-----CLSTADFSSITPLVK 326

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
           +++  L + K  V L  ++     + + ++     + +    L    ++G+ R+   +N+
Sbjct: 327 NVMSELRKRK--VTLSVSSLRAYGLGEDILDEMASMRI--TGLTFAPEAGTQRMRDVVNK 382

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDD 346
             T     +   R+ +      +   F++G P E DDD
Sbjct: 383 NVTEAHIEESTTRVFARGWH-RLKLYFMIGLPTEEDDD 419


>gi|144899152|emb|CAM76016.1| Protein of unknown function UPF0004:Elongator protein 3/MiaB/NifB
           [Magnetospirillum gryphiswaldense MSR-1]
          Length = 668

 Score = 57.3 bits (137), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 50/285 (17%), Positives = 88/285 (30%), Gaps = 47/285 (16%)

Query: 132 TYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTA------------- 178
                  L++R    +  ++         E  ++ D  Y R    +              
Sbjct: 272 NASNAHALVQRHGEREVWINPPPIPLSMMEMDAVYDLTYARAPHPSYGDAKLPAWEMIRF 331

Query: 179 FLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDNGVCEI----TLLGQNVN 233
            + I  GC   C+FC +    G  I SRS   ++ E   + D           L G   N
Sbjct: 332 SVNIMRGCFGGCSFCSITEHEGRVIQSRSEGSILREIEAIRDKTKGFTGTISDLGGPTAN 391

Query: 234 AWR----------------------GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPR 271
            +R                       K L  +      +      IKG+ R+   +    
Sbjct: 392 MYRLACNDDKIQAVCRRLSCVYPDICKNLGTDHGPLIQIYRKARAIKGVKRITIGSGLRY 451

Query: 272 DMSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRRHTAYE--YRQIIDRIRSVR- 326
           D++    +   +L    +  YL +  +      L  M +        ++Q+ D+  S   
Sbjct: 452 DLAVKSPEYVKELVTHHVGGYLKIAPEHTETGPLSKMMKPGMGAYDRFKQMFDKAASAAG 511

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGY--AQAFSFKYSP 369
               +   FI   PG +D+D       + K G+   Q  +F  SP
Sbjct: 512 KKYYLIPYFIAAHPGTSDEDMMNLALWLKKNGFKADQVQTFLPSP 556


>gi|312972723|ref|ZP_07786896.1| radical SAM superfamily protein [Escherichia coli 1827-70]
 gi|310332665|gb|EFP99878.1| radical SAM superfamily protein [Escherichia coli 1827-70]
          Length = 365

 Score = 57.3 bits (137), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 48/297 (16%), Positives = 98/297 (32%), Gaps = 58/297 (19%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDN--GVCEIT--LLGQNVNA 234
           + I  GC   C+FC +    G  I SRS   +++E   + D   G   +   L G   N 
Sbjct: 6   VNIMRGCFGGCSFCSITEHEGRIIQSRSEDSIINEIEAIRDTVPGFTGVISDLGGPTANM 65

Query: 235 WR----------------------GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
           +                          +D       +L     ++KG+ ++   +    D
Sbjct: 66  YMLRCKSPRAEQTCRRLSCVYPDICPHMDTNHEPTINLYRRARDLKGIKKILIASGVRYD 125

Query: 273 MSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRRH--TAYEYRQIIDRI-RSVRP 327
           ++    +   +L    +  YL +  +   +  L  M +    +   ++++ D   +    
Sbjct: 126 IAVEDPRYIKELATHHVGGYLKIAPEHTEEGPLSKMMKPGMGSYDRFKELFDTYSKQAGK 185

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGY--AQAFSFKYSPRLGT---------PGS 376
           +  +   FI   PG  D+D       + K  +   Q  +F  SP   +         P +
Sbjct: 186 EQYLIPYFISAHPGTRDEDMVNLALWLKKHRFRLDQVQNFYPSPLANSTTMYYTGKNPLA 245

Query: 377 NMLEQ-----VDENVKAERL-LCLQK--------KLREQQVSF-NDACVGQIIEVLI 418
            +  +     V +  K  RL   L +         +R+   +      +G   + L+
Sbjct: 246 KIGYKSEDVFVPKGDKQRRLHKALLRYHDPANWPLIRQALEAMGKKHLIGSRRDCLV 302


>gi|294101335|ref|YP_003553193.1| Radical SAM domain protein [Aminobacterium colombiense DSM 12261]
 gi|293616315|gb|ADE56469.1| Radical SAM domain protein [Aminobacterium colombiense DSM 12261]
          Length = 436

 Score = 57.3 bits (137), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 44/265 (16%), Positives = 95/265 (35%), Gaps = 18/265 (6%)

Query: 111 QAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGY 170
           Q   + + R  P   V++G       PE   R      V      +E  +  L + +   
Sbjct: 128 QWCLDRVKRIFPHTPVLLGGFYAQLCPEH-ARTIGANGVQTAPLCLESPYPALDLYNQPE 186

Query: 171 NRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQ 230
                    +    GC   C +C           R + +++ E        +  +     
Sbjct: 187 ------YGVIMTSWGCPLHCQYCASKLLWPCFRQREVEEIIHEI--SFQERIPTVR---- 234

Query: 231 NVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT-SHPRDMSDCLIKAHGDLDVLMP 289
           ++  +    L  ++  F  L   L +    +R       H R++ +   +   D      
Sbjct: 235 DMAFYDDALLINKEFHFYPLCGRLRKSFSHLRFHTPNGLHVREIDEKCARVLFDTG--FK 292

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQII-DRIRSVRPDIAISSDFIVGFPGETDDDFR 348
            + L ++S    I K+ + + + ++Y + +   +R+      I +  ++G PG+  +  +
Sbjct: 293 TIRLSLESTDPIIQKASSEKVSEHQYVKAVTHLLRAGYSQEDIETYILIGLPGQRFESVK 352

Query: 349 ATMDLVDKIGYAQAFSFKYSPRLGT 373
             ++ V  +G A A + +YSP  GT
Sbjct: 353 NAIEFVHSLG-AVAKTAEYSPIPGT 376


>gi|258592996|emb|CBE69307.1| putative oxygen-independent coproporphyrinogen III oxidase (yggW)
           [NC10 bacterium 'Dutch sediment']
          Length = 397

 Score = 57.3 bits (137), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 39/197 (19%), Positives = 66/197 (33%), Gaps = 16/197 (8%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQV-VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK 244
           C   C +C          S     V +++  + +   +          +        G  
Sbjct: 32  CLSRCQYC-------DFNSYRFDDVQIEQYLEALAQEIAHRASSDVIRHRPVCSVFFGGG 84

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL-------MPYLHLPVQS 297
                    L  I    R  +T     ++S        DL  L       +  L + VQ+
Sbjct: 85  TPSILHASQLIGILDQCRAAFTFEVGAEVSLEANPGTVDLPKLRTLREGGVTRLSIGVQA 144

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
             DR+L+ + R HTA+E  +     R       I+ D + G PG+  DD+  T+D V  +
Sbjct: 145 VQDRLLQRIGRAHTAHEAERAYRMAREAGFG-DINLDVMFGLPGQNMDDWSETLDWVIGV 203

Query: 358 GYAQAFSFKYSPRLGTP 374
                 ++      GTP
Sbjct: 204 EPEHVSAYGLILEEGTP 220


>gi|228475950|ref|ZP_04060658.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Staphylococcus hominis SK119]
 gi|314936296|ref|ZP_07843643.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Staphylococcus hominis subsp. hominis C80]
 gi|228269773|gb|EEK11253.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Staphylococcus hominis SK119]
 gi|313654915|gb|EFS18660.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Staphylococcus hominis subsp. hominis C80]
          Length = 373

 Score = 57.3 bits (137), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 41/241 (17%), Positives = 86/241 (35%), Gaps = 24/241 (9%)

Query: 177 TAFLTIQEGCDKFCTFCVV-PYTRGIEISRSLSQ-VVDEARKLIDNGVCEITLLGQNVNA 234
           +A++ I   C + CT+C    Y    +    + + +    +++  + +  +    + +  
Sbjct: 5   SAYIHIPF-CVRICTYCDFNKYFINKQ---PVDEYISALIKEMKTSEIRNL----ETMYV 56

Query: 235 WRGKGLDGEKCTFSDLLYSLSE---IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL 291
             G            LL ++     IKG                 L+ ++G     +  +
Sbjct: 57  GGGTPTALNLKQLETLLKAIQSTFSIKGEYTFEANPDELTLDKVKLLHSYG-----VNRI 111

Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351
            + VQ+    +LK + R H   +    +D  R    + +IS D +   P +T DDF  ++
Sbjct: 112 SMGVQTFKPELLKILGRTHKTQDIYNAVDYARKANIE-SISLDLMYHLPTQTLDDFSDSL 170

Query: 352 DLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ-----VDENVKAERLLCLQKKLREQQVSFN 406
           +   ++      S+       T   NM  +      +E++ AE    L   L E      
Sbjct: 171 NRAIQMDIDHISSYGLILEPKTQFYNMYRKGKLKLPNEDLGAEMYQYLMNVLGETSFKQY 230

Query: 407 D 407
           +
Sbjct: 231 E 231


>gi|221513272|ref|NP_524183.2| lipoic acid synthase [Drosophila melanogaster]
 gi|306756317|sp|Q7JQW6|LIAS_DROME RecName: Full=Lipoyl synthase, mitochondrial; AltName: Full=Lipoate
           synthase; Short=LS; Short=Lip-syn; AltName: Full=Lipoic
           acid synthase; Flags: Precursor
 gi|220902670|gb|AAF51596.2| lipoic acid synthase [Drosophila melanogaster]
          Length = 377

 Score = 57.3 bits (137), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 28/186 (15%), Positives = 63/186 (33%), Gaps = 15/186 (8%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQV---VDEARKLIDNGVCEITLLGQNVNAWRGKGLDG 242
           C + C FC V   R          V   V+ A  +   G+  I L   +    R    DG
Sbjct: 134 CTRGCRFCSVKTARKP----PPLDVNEPVNTATAIASWGLDYIVLTSVD----RDDLPDG 185

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
                ++ +  +      + +       R  +   +K   +  + +   ++         
Sbjct: 186 GSEHIAETVREIKARNSNIFVECLVPDFRG-NLECVKTIANSGLDVYAHNIETVEKLTPY 244

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           ++     +   +  Q++   +   P++   S  ++G  GETD++   T+  + + G    
Sbjct: 245 VRDRRAHYR--QTLQVLTEAKRFNPNLITKSSIMLGL-GETDEEIENTLKDLREAGVDCV 301

Query: 363 FSFKYS 368
              +Y 
Sbjct: 302 TLGQYM 307


>gi|77920550|ref|YP_358365.1| Fe-S oxidoreductase [Pelobacter carbinolicus DSM 2380]
 gi|77546633|gb|ABA90195.1| Predicted Fe-S oxidoreductase [Pelobacter carbinolicus DSM 2380]
          Length = 306

 Score = 57.3 bits (137), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 40/237 (16%), Positives = 76/237 (32%), Gaps = 21/237 (8%)

Query: 159 KFERLSIVDGGYNRKRGVTAFLTIQEG--CDKF--------CTFCVV--PYTRGIEISRS 206
           K   L        R  G    ++I  G  C           C FC      + GI    +
Sbjct: 3   KKPYLVFSQHLKQRFGGRVHKISIDAGFSCPNRGATRDQPGCLFCDPDGSGSFGIHRGLA 62

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG--EKCTFSDLLYSLSEIKGLVRLR 264
           +++ ++  ++++           ++  A+     +          L      + G+V L 
Sbjct: 63  VAEQLERGKEIMVRKYK-----AKHFLAYFQPFSNTFAPPERLRSLYDEALGVSGVVGLT 117

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
             T         L            +L L +QS  DR L  + R H    + +     ++
Sbjct: 118 VGTRPDCCPPAVLDLLEEYHRRTYFWLELGLQSSHDRSLDFLRRGHDYACFLEAYTAAKA 177

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
               + +    I+G PGET +D  AT + + ++              GT    + +Q
Sbjct: 178 R--GLRVCVHVILGLPGETREDMLATAEEMARLQVDGIKLHLLHVLRGTRLGELYQQ 232


>gi|212695919|ref|ZP_03304047.1| hypothetical protein ANHYDRO_00452 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212677042|gb|EEB36649.1| hypothetical protein ANHYDRO_00452 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 431

 Score = 57.3 bits (137), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 40/237 (16%), Positives = 89/237 (37%), Gaps = 21/237 (8%)

Query: 132 TYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCT 191
             + L +L    +     ++    V++  +RL      +N       ++ I   C + C 
Sbjct: 89  KNHNLEDLKNIYKVSDEKINLLKKVKESQDRLKFAPNSFNL------YINIPF-CPQRCK 141

Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQN--VNAWRGKGLDGEKCTFSD 249
           +C  P          +S +VD+  + +D  + EI  +  +  ++     G      +  D
Sbjct: 142 YCSYPTI--------VSNIVDK-NQYVDFLLKEIKGISLDKKLDTIYLGGGTPSNLSLKD 192

Query: 250 LLYSLSEI-KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
           L   LS + +      +T    R+ +    K     +  +  + L  Q+ S  +L+++NR
Sbjct: 193 LDRILSLLNEKFTFDEFTLEAGREDTLDFEKLDLFKEKNVGRISLNPQTFSKNVLENVNR 252

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
                 + +I    + +     I+ DFI+G  GE  + F+   +++  +        
Sbjct: 253 PIDFENFIKIYKYAKDL--GFIINMDFIIGLFGENRESFKKNFEILKDLNPDNLTFH 307


>gi|154506683|ref|ZP_02043140.1| hypothetical protein RUMGNA_03951 [Ruminococcus gnavus ATCC 29149]
 gi|153793282|gb|EDN75705.1| hypothetical protein RUMGNA_03951 [Ruminococcus gnavus ATCC 29149]
          Length = 643

 Score = 57.3 bits (137), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 54/298 (18%), Positives = 102/298 (34%), Gaps = 53/298 (17%)

Query: 156 VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEAR 215
            E  + +  +V      +  V   L IQ GC + C FC           R++ ++   A+
Sbjct: 263 TEAPYPQAPVVPFIKATQDRVV--LEIQRGCIRGCRFCQAGMLYRPTRERNVERLKQYAK 320

Query: 216 KLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL-VRLRYTTSHPRDMS 274
            ++++        G    +               + + + E KG  + +   +      S
Sbjct: 321 AMLES-------TGHEEISLSSLSSSDYSELKELVTFLIDEFKGEGINISLPSLRIDAFS 373

Query: 275 DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSD 334
             ++    D+      L    ++GS R+   +N+  T     +   +      +  +   
Sbjct: 374 LDVMSKVQDIKK--SSLTFAPEAGSQRMRDVINKGLTEEIILEGAGQAFEGGWN-KVKLY 430

Query: 335 FIVGFPGETDDDFRATMDLVDKI----------------GYAQAFSFKYSPRLGTP--GS 376
           F++G P ET++D +A   L +K+                    + SF + P+  TP   +
Sbjct: 431 FMLGLPTETEEDMKAIAHLAEKVARRYYEIPKEQRNGKCQITASSSF-FIPKPFTPFQWA 489

Query: 377 NMLEQVDEN-------VKAERLLCLQKK------------LREQQVSFNDACVGQIIE 415
            M     E        VK E L  L KK            + E   +  D  VG++IE
Sbjct: 490 QMFP--SEEYIRRATIVKHEFLQQLNKKSLKYNWHEADVTVLEGVFARGDRKVGKVIE 545


>gi|119510504|ref|ZP_01629636.1| hypothetical protein N9414_07661 [Nodularia spumigena CCY9414]
 gi|119464847|gb|EAW45752.1| hypothetical protein N9414_07661 [Nodularia spumigena CCY9414]
          Length = 551

 Score = 57.3 bits (137), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 58/269 (21%), Positives = 106/269 (39%), Gaps = 27/269 (10%)

Query: 177 TAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR 236
              + +   C + C FC+  Y      + SL + +  A +        + LLG +V    
Sbjct: 225 IYMVEVVRSCPEMCRFCMASYLTLPFRTASLEESLIPAIEKGLAVTNRLGLLGASVTQH- 283

Query: 237 GKGLDGEKCTFSDLLYSLSEIK-GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPV 295
                     F  LL  +S+ K   VRL   +     ++  L +     D     L + V
Sbjct: 284 --------PEFEALLDYISQPKYDDVRLSIASVRTNTVTVQLAETLAKRDT--RSLTIAV 333

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD--IAISSDFIVGFPGETDDDFRATMDL 353
           +SGS+++ + +N++       +II    + +     A+    + G PGE  +D   T+ +
Sbjct: 334 ESGSEKLRQIVNKK---LHNDEIIQAAINAKAGGLKALKLYGMAGIPGEEPEDLEQTVAM 390

Query: 354 VDKIGYAQAF---SFKYS---PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFN- 406
           +  I  A      +F  S   P+  TP         +  K  RL  LQK+L+ Q + F  
Sbjct: 391 MRNIKKAAPGLRLTFGCSTFVPKAHTP-FQWFGVNRQAEK--RLQMLQKQLKPQGIEFRP 447

Query: 407 DACVGQIIEVLIEKHGKEKGKLVGRSPWL 435
           ++    II+ LI +  +   +L+  +   
Sbjct: 448 ESYNWSIIQALISRGDRRLSQLLELTREF 476


>gi|331089627|ref|ZP_08338526.1| hypothetical protein HMPREF1025_02109 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|330404995|gb|EGG84533.1| hypothetical protein HMPREF1025_02109 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 629

 Score = 57.3 bits (137), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 41/311 (13%), Positives = 91/311 (29%), Gaps = 47/311 (15%)

Query: 113 EGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFE--RLSIVDGGY 170
             +    +    +   G +      E L   +       +   ++D ++   +      Y
Sbjct: 216 YAKSFYTQYLNTDAFSGKRLAEPYSEHLYVVQNPPSKPLSVTEMDDIYDLPYMRTYHPSY 275

Query: 171 NRKRGVTAFLTI------QEGCDKFCTFCVVPYTRGIEIS-RSLSQVVDEARKLIDNGVC 223
             K G+ A   I        GC   C+FC + + +G  +  RS   ++ EA ++++    
Sbjct: 276 KAKGGIPAISEIRFSLISNRGCFGGCSFCALTFHQGRIVQVRSHESLIKEAEQMVEEKDF 335

Query: 224 EITL-------------------------LGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258
           +  +                           Q +     K +D +   +  LL  L +I 
Sbjct: 336 KGYIHDVGGPTANFRHPSCEKQLRHGVCATKQCLFPAPCKNIDADHSDYVALLRKLRKIP 395

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQ------SGSDRILKSMNRRHTA 312
            + ++   +         L          +   H+  Q        S  +L  M +    
Sbjct: 396 KVKKVFIRS--GIRFDYLLADKKNTFLKELCQYHVSGQLKVAPEHISAPVLSLMGKPEHR 453

Query: 313 YEYRQIIDRIRSVRPDIA----ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
             Y +   + + +   +     +    +   PG T  +     +    +GY       + 
Sbjct: 454 -IYEEFTRQFKKMNERLGMDQYLVPYLMSSHPGSTLKEAVELAEYCRDLGYMPEQVQDFY 512

Query: 369 PRLGTPGSNML 379
           P   T  + M 
Sbjct: 513 PTPSTLSTCMY 523


>gi|300722308|ref|YP_003711593.1| lipoate protein ligase [Xenorhabdus nematophila ATCC 19061]
 gi|297628810|emb|CBJ89388.1| lipoate protein ligase, an iron-sulfur enzyme [Xenorhabdus
           nematophila ATCC 19061]
          Length = 321

 Score = 57.3 bits (137), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 30/183 (16%), Positives = 67/183 (36%), Gaps = 12/183 (6%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V    G   +   ++    A+ + D  +  + +   +    R    DG   
Sbjct: 94  CTRRCPFCDV--AHGRPNAPDTNEPTKLAQTIQDMNLRYVVITSVD----RDDLRDGGAQ 147

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAH-GDLDVLMPYLHLPVQSGSDRILK 304
            F+D + ++ E    +++       R   D  ++        +  +    V     R+ +
Sbjct: 148 HFADCISAIREKNPTIKIETLVPDFRGRMDRALEILTATPPDVFNHNLENV----PRVYR 203

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
            +          +++++ +   PDI   S  +VG  GET+++    M  + + G      
Sbjct: 204 QVRPGANYEWSLKLLEKFKEAHPDIPTKSGLMVGL-GETNEEILEVMRDLRRHGVTMLTL 262

Query: 365 FKY 367
            +Y
Sbjct: 263 GQY 265


>gi|294675708|ref|YP_003576323.1| oxygen-independent coproporphyrinogen-III oxidase [Rhodobacter
           capsulatus SB 1003]
 gi|294474528|gb|ADE83916.1| oxygen-independent coproporphyrinogen-III oxidase-1 [Rhodobacter
           capsulatus SB 1003]
          Length = 460

 Score = 57.3 bits (137), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 49/212 (23%), Positives = 79/212 (37%), Gaps = 17/212 (8%)

Query: 171 NRKRGVTAFLTIQEGCDKFCTFCVV------PYTRGIEISRSLSQVVDEARKLIDNG--V 222
            R R   A++ I   C+  C FC        P      +   ++Q+   AR     G  +
Sbjct: 61  PRSRRAVAYVHIPF-CENHCLFCGFYQNAWRPDLGTSYVDALIAQLRGFARHPAQEGPPL 119

Query: 223 CEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHG 282
             + L G    A     +       + L+ +L     L      T   R  S  L KA  
Sbjct: 120 QAVYLGGGTPTALSAPDI-------ARLVRALRSHLPLAPDCEITLEGRVHSFGLEKARA 172

Query: 283 DLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGE 342
             D  +  + L VQS SD I + + R+ +  E  Q +  + ++     I  D I G PG+
Sbjct: 173 AFDAGVTRISLGVQSFSDAIRRPLGRKASRAEILQALQGLVTLDQGAVI-VDLIYGLPGQ 231

Query: 343 TDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
           + +D  A + L   +G      +  +   GTP
Sbjct: 232 SPEDVAADVRLCADLGLDGLDLYALNLIPGTP 263


>gi|212695877|ref|ZP_03304005.1| hypothetical protein ANHYDRO_00410 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212677131|gb|EEB36738.1| hypothetical protein ANHYDRO_00410 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 344

 Score = 57.3 bits (137), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 29/208 (13%), Positives = 69/208 (33%), Gaps = 17/208 (8%)

Query: 176 VTAFLTIQEGCDKFCTFCVVPYTR-GIEISR-SLSQVVDEARKLIDNGVCEITLLGQNVN 233
           V   +     C   C +C +  +   +E  R +  +++  A+     G     L G    
Sbjct: 45  VRGLIEFSNFCKNNCYYCGIRKSNLNVERYRLNFDEIIMCAKIGYKLGYRTFVLQG---- 100

Query: 234 AWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP-RDMSDCLIKAHGDLDVLMPYLH 292
              G+ L  +      ++  + +I     +  +     ++       A  D  +L     
Sbjct: 101 ---GEDLKFKDEDICKIVEEIKKIHPDCAITLSIGERSKEAYRSFFNAGADRYLLREET- 156

Query: 293 LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352
               S  +   K   +  +    R+ +  ++ +     +   F+VG P + D+D  + + 
Sbjct: 157 ----SNKNHYYKLHPKEMSFENRRKALFDLKEI--GFQVGGGFMVGSPYQKDEDLISDLR 210

Query: 353 LVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
            + ++         Y  +  TP  +M  
Sbjct: 211 FLQELKPDMIGIGPYLSQHDTPFKDMEN 238


>gi|296131573|ref|YP_003638820.1| Radical SAM domain protein [Thermincola sp. JR]
 gi|296030151|gb|ADG80919.1| Radical SAM domain protein [Thermincola potens JR]
          Length = 363

 Score = 57.3 bits (137), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 82/221 (37%), Gaps = 19/221 (8%)

Query: 176 VTAFLTIQEGCDKFCTFCVVPYT-RGIEISRSLS-QVVDEARKLIDNGVCEITLLGQNVN 233
           +  F+     C   C FC+   + R  +  R    +++D A +L+++GV  + L      
Sbjct: 61  LYGFVYFSTYCRNNCAFCMYRRSNRNFKRYRKTEAEILDTANRLVESGVHLLDLTMGEDP 120

Query: 234 AWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHL 293
           A+     +G    F  L+ ++  IK    +    S      + L     +   +    + 
Sbjct: 121 AYFSNNCEG----FEKLIRTVENIKKATEMPLMISPGVVSEEIL----REFKKIGVDWYA 172

Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
             Q   +  L   N R       ++  +I + +  + I    + G  G+T +D   ++++
Sbjct: 173 CYQETHNLDL-FNNLRLDQSYDTRMEKKIFAHKVGLLIEEGIMTGV-GDTAEDIAHSLEV 230

Query: 354 VDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCL 394
           +++IG  Q     +  +  TP       V       RL  L
Sbjct: 231 MNEIGAEQVRVMSFVSQEWTPMYPWP-VVP------RLREL 264


>gi|283834621|ref|ZP_06354362.1| oxygen-independent coproporphyrinogen III oxidase [Citrobacter
           youngae ATCC 29220]
 gi|291069532|gb|EFE07641.1| oxygen-independent coproporphyrinogen III oxidase [Citrobacter
           youngae ATCC 29220]
          Length = 457

 Score = 57.3 bits (137), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 38/246 (15%), Positives = 86/246 (34%), Gaps = 16/246 (6%)

Query: 173 KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNV 232
           +R ++ ++ I   C K C FC        +  +   Q +D   + I          G++V
Sbjct: 50  ERPLSLYVHIPF-CHKLCYFCGCNKVVTRQQHK-ADQYLDVLEQEI--IHRAPLFAGRHV 105

Query: 233 NAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL-----RYTTSHPRDMSDCLIKAHGDLDVL 287
           +     G        + +   +S ++G               PR++   ++         
Sbjct: 106 SQLHWGGGTPTYLNKAQISRLMSLLRGNFNFNADAEISIEVDPREIELDVLDHLRAEG-- 163

Query: 288 MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS-DFIVGFPGETDDD 346
              L + VQ  +  + + +NR         +++  R +      ++ D I G P +T + 
Sbjct: 164 FNRLSMGVQDFNKEVQRLVNREQDEEFIFALLNHAREI--GFTSTNIDLIYGLPKQTPES 221

Query: 347 FRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSF 405
           F  T+  V ++   +   F Y+       +   ++  D     ++L  LQ+ +     + 
Sbjct: 222 FAFTLKRVAELNPDRLSVFNYAHLPTLFAAQRKIKDADLPSAQQKLDILQETISSLTETG 281

Query: 406 NDACVG 411
               +G
Sbjct: 282 YQ-FIG 286


>gi|27383084|ref|NP_774613.1| hypothetical protein blr7973 [Bradyrhizobium japonicum USDA 110]
 gi|47606284|sp|Q89C25|Y7973_BRAJA RecName: Full=UPF0313 protein blr7973
 gi|27356258|dbj|BAC53238.1| blr7973 [Bradyrhizobium japonicum USDA 110]
          Length = 673

 Score = 57.3 bits (137), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 49/285 (17%), Positives = 85/285 (29%), Gaps = 48/285 (16%)

Query: 161 ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLID 219
              S  D        +   +TI  GC   CTFC +    G  I +RS   ++ E  K+ D
Sbjct: 321 PHPSYGDAKIPAWDMIKFSVTIMRGCFGGCTFCSITEHEGRIIQNRSEGSILREIEKIRD 380

Query: 220 NGVCEITLL----GQNVNAWRGKGLDGE----------------------KCTFSDLLYS 253
                  ++    G   N +R    D +                            L   
Sbjct: 381 KTPGFTGVISDIGGPTANMYRMACKDPKVEGACRRPSCVFPEICPNLNTSHDDLIRLYRK 440

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRRHT 311
           + E KG+ ++   +    D++    +   +L    +  YL +  +      L  M +   
Sbjct: 441 VRETKGIKKVMVASGVRYDLAVESPEYIKELVTHHVGGYLKIAPEHTERGPLDKMMKPGI 500

Query: 312 AYE--YRQIIDRIRS-VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
                ++++ D           +   FI   PG TD+D       + K  Y       + 
Sbjct: 501 GAYNQFKRMFDAAAEQAGKKYYLIPYFIAAHPGTTDEDMMNLALWLKKNRYRADQVQTFL 560

Query: 369 PRLGTPGSNML---------------EQVDENVKAERLLCLQKKL 398
           P      + M                ++V E +K  R   L K  
Sbjct: 561 PSPMATATAMYHTGVNPLRGVRHGGSDKV-EAIKGLRQRRLHKAF 604


>gi|326204235|ref|ZP_08194094.1| Radical SAM domain protein [Clostridium papyrosolvens DSM 2782]
 gi|325985510|gb|EGD46347.1| Radical SAM domain protein [Clostridium papyrosolvens DSM 2782]
          Length = 434

 Score = 57.3 bits (137), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 42/192 (21%), Positives = 70/192 (36%), Gaps = 25/192 (13%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG---LDG 242
           CD FC  C  PY      S +   +    R LI     EI  +G+N N  + +      G
Sbjct: 64  CDSFCRDC--PY----SKSVNKGNLEKYVRALI----KEIEFIGKNKNNSKIRAKAVYFG 113

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY-------LHLPV 295
                    + LS+I G ++  +       ++        D D L  Y       + L +
Sbjct: 114 GGTPTVLSAHQLSDIIGKLKEYFVD-ESTSITLESHPKSLDCDNLSKYRDAGINRISLGI 172

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
           QS  D +LK M R + +    ++  ++         + D + GF  ETD+ F   ++   
Sbjct: 173 QSFQDSVLKEMGRDYDSNRALEVARKVSEA--GWNFNVDIMYGFDSETDEMFYEDLE--R 228

Query: 356 KIGYAQAFSFKY 367
            I +       Y
Sbjct: 229 AIQFNANHISIY 240


>gi|322421459|ref|YP_004200682.1| cobalamin B12-binding domain-containing protein [Geobacter sp. M18]
 gi|320127846|gb|ADW15406.1| cobalamin B12-binding domain protein [Geobacter sp. M18]
          Length = 474

 Score = 57.3 bits (137), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 57/323 (17%), Positives = 106/323 (32%), Gaps = 33/323 (10%)

Query: 54  ERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAE 113
           E +N  D  DL+V+                    R  + +       + VV+ G    + 
Sbjct: 52  EELNIDDAPDLVVI------------QVYVTSASRAYRVADHYRSKGVFVVLGGLHVTSL 99

Query: 114 GEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRK 173
            EE    +    + +GP      PE L   R  +  +          E          R+
Sbjct: 100 PEEAQLHADA--IFLGPGEET-FPEFLSDFRRRQTKLVYFSPKRSLLELPPARRDLIKRE 156

Query: 174 RGVTA-FLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNV 232
           R +    L +  GC   C FC          S    +V     ++       +  L  ++
Sbjct: 157 RYLVPNSLVVSRGCPHHCNFCYKDNFFRGGASFYTQRVDAALAEIERLPGRHLYFLDDHL 216

Query: 233 NAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM-SDCLIKAHGDLDVLMPYL 291
            A R    +       D +       G+ RL    +    +    LI+    +   +  +
Sbjct: 217 LADRHFSAN-----LFDGMR------GMNRLFQGAATVDSILDGDLIE--KAVQAGLRSI 263

Query: 292 HLPVQSGSDRILKSMNRRHT-AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
            +  +S +   L+S N+R     +Y +++ R+  +   + I+  F+ G   +  D FR T
Sbjct: 264 FIGFESINSANLRSSNKRQNLGRDYDRVVRRLDDL--GVFINGSFVFGLDSDGPDVFRRT 321

Query: 351 MDLVDKIGYAQAFSFKYSPRLGT 373
           +    + G   A     +P  GT
Sbjct: 322 VSWAVEKGITTATFHVLTPYPGT 344


>gi|332654565|ref|ZP_08420308.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Ruminococcaceae bacterium D16]
 gi|332516529|gb|EGJ46135.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Ruminococcaceae bacterium D16]
          Length = 406

 Score = 56.9 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 40/204 (19%), Positives = 75/204 (36%), Gaps = 18/204 (8%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C   C +C      G          +D+ +K + + + E   L Q+          G   
Sbjct: 19  CRSKCDYCDFYSLAGR------DDRMDQYQKALLSHIKETAPLAQDFPVDTIYIGGGTPS 72

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCL------IKAHGDLDVL-MPYLHLPVQSG 298
            +      L E+ G++R  Y      +++         +KA   L    +  L + +QS 
Sbjct: 73  YYG--AKRLKELLGVIRKLYKVEKDAEVTVECNPDSVDVKALKILRKAGVNRLSMGMQSA 130

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA-ISSDFIVGFPGETDDDFRATMDLVDKI 357
           +   L+ ++R HT  +  +     R        +S D I G PG+T D ++AT++    +
Sbjct: 131 NACELERIHRIHTPQQVNEAATAARKA--GFTNLSLDLIYGLPGQTMDSWKATVEHALSL 188

Query: 358 GYAQAFSFKYSPRLGTPGSNMLEQ 381
                  +      GTP +  + Q
Sbjct: 189 IPQHLSCYGLKVEEGTPLAARVAQ 212


>gi|282856805|ref|ZP_06266064.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Pyramidobacter piscolens W5455]
 gi|282585315|gb|EFB90624.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Pyramidobacter piscolens W5455]
          Length = 376

 Score = 56.9 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 33/190 (17%), Positives = 66/190 (34%), Gaps = 9/190 (4%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR---GKGLDG 242
           C   C +C          S  + + +      ++  +      G++ +      G     
Sbjct: 16  CRSKCPYCAFYSFAP--RSGQMERWLACLAAELE-TIKSGLGEGESFSTVYIGGGTPSYL 72

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
               +  LL +L ++       +T     +  D    A    D  +  + + VQS  DR 
Sbjct: 73  PLALWRKLLGALGKVPREPACEFTVEANPESVDEEKLALWK-DFGVTRVSVGVQSLDDRE 131

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           LK+M R H + +  +I++          +S+D I G P +T   +  +M  +   G    
Sbjct: 132 LKTMARPHDSAQALRILELCMKK--GFRVSADLIFGLPRQTLRRWHESMSKLVAEGVTHL 189

Query: 363 FSFKYSPRLG 372
             ++     G
Sbjct: 190 SVYQLMIEDG 199


>gi|197335171|ref|YP_002156923.1| radical SAM protein, family [Vibrio fischeri MJ11]
 gi|197316661|gb|ACH66108.1| radical SAM protein, family [Vibrio fischeri MJ11]
          Length = 313

 Score = 56.9 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 2/88 (2%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +L L +Q+ +D+ LK +NR H    Y  I  + RS+   I + +  I+G PG+T DD R 
Sbjct: 141 WLELGLQTANDKTLKRINRGHDFACYDAITRKARSL--GIKVCTHLIIGLPGDTRDDNRQ 198

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
           T+D V   G             G+  + 
Sbjct: 199 TLDKVLATGTDGIKLHPLHIVEGSTMAK 226


>gi|170079417|ref|YP_001736055.1| coproporphyrinogen III oxidase [Synechococcus sp. PCC 7002]
 gi|169887086|gb|ACB00800.1| oxygen-independent coproporphyrinogen III oxidase, putative
           [Synechococcus sp. PCC 7002]
          Length = 396

 Score = 56.9 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 38/202 (18%), Positives = 69/202 (34%), Gaps = 12/202 (5%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C +C  P T   E     + +  +  +  +    EI          +     G   
Sbjct: 12  CLRRCFYCDFPITVTGEK--QTAGIRTQMEEYGEWLCREIRATPILGGELKTVFFGGGTP 69

Query: 246 TF------SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
           +         +L +L +  G+ +    +      +  L +     ++ +  L L VQ+  
Sbjct: 70  SLFPVDLLEKVLRTLDQRFGIAQSAEISLEIDPGTFSLEQLIRYKNIGISRLSLGVQAFQ 129

Query: 300 DRILKSMNRRHTAYEYRQIIDRI-RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           D +L +  R H         D + RS  P    S D I G P +T DD++A++D    + 
Sbjct: 130 DNLLANCGRSHRVINIFTACDHLERSQIP---WSLDLISGLPDQTRDDWQASLDQAIALN 186

Query: 359 YAQAFSFKYSPRLGTPGSNMLE 380
                 +       TP     E
Sbjct: 187 PHHISCYDLVIEPQTPFGKQYE 208


>gi|16198015|gb|AAL13786.1| LD24887p [Drosophila melanogaster]
 gi|28380901|gb|AAO41414.1| RH26374p [Drosophila melanogaster]
 gi|220954722|gb|ACL89904.1| Las-PC [synthetic construct]
          Length = 380

 Score = 56.9 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 28/186 (15%), Positives = 63/186 (33%), Gaps = 15/186 (8%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQV---VDEARKLIDNGVCEITLLGQNVNAWRGKGLDG 242
           C + C FC V   R          V   V+ A  +   G+  I L   +    R    DG
Sbjct: 137 CTRGCRFCSVKTARKP----PPLDVNEPVNTATAIASWGLDYIVLTSVD----RDDLPDG 188

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
                ++ +  +      + +       R  +   +K   +  + +   ++         
Sbjct: 189 GSEHIAETVREIKARNSNIFVECLVPDFRG-NLECVKTIANSGLDVYAHNIETVEKLTPY 247

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           ++     +   +  Q++   +   P++   S  ++G  GETD++   T+  + + G    
Sbjct: 248 VRDRRAHYR--QTLQVLTEAKRFNPNLITKSSIMLGL-GETDEEIENTLKDLREAGVDCV 304

Query: 363 FSFKYS 368
              +Y 
Sbjct: 305 TLGQYM 310


>gi|312135678|ref|YP_004003016.1| Radical SAM domain-containing protein [Caldicellulosiruptor
           owensensis OL]
 gi|311775729|gb|ADQ05216.1| Radical SAM domain protein [Caldicellulosiruptor owensensis OL]
          Length = 471

 Score = 56.9 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 37/195 (18%), Positives = 82/195 (42%), Gaps = 17/195 (8%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQV-----------VDEARKLIDNGVCEITLLGQNVNA 234
           C   C +C        E++R +  +           +++    I+    +I  +     +
Sbjct: 165 CPTKCLYCSFSC---HEMTRQVKSLIGMYTDSLICELEKTYHKIEENKNKIVAIYFGGGS 221

Query: 235 WRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV-LMPYLHL 293
               G+D  K  F +L  +L +I+ +  + +    P  + + L+K   ++       + +
Sbjct: 222 PATLGIDNIKRIFVNLFKNL-KIEHIQEITFEAGRPDTIDEKLLKCLSEIKKDFNLRICI 280

Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
             Q+ +D  LK + R HT  + ++  ++         I+SD I+G PGE ++D++ T++ 
Sbjct: 281 NPQTSNDNTLKIIGRNHTFEDIKRAFEQANEYGFK-NINSDVILGLPGEDENDYKNTIED 339

Query: 354 VDKIGYAQAFSFKYS 368
           + K+  A       S
Sbjct: 340 ILKLSPASITIHTLS 354


>gi|257462243|ref|ZP_05626660.1| oxygen-independent coproporphyrinogen III oxidase [Fusobacterium
           sp. D12]
 gi|317059912|ref|ZP_07924397.1| oxygen-independent coproporphyrinogen III oxidase [Fusobacterium
           sp. D12]
 gi|313685588|gb|EFS22423.1| oxygen-independent coproporphyrinogen III oxidase [Fusobacterium
           sp. D12]
          Length = 348

 Score = 56.9 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 33/227 (14%), Positives = 71/227 (31%), Gaps = 23/227 (10%)

Query: 185 GCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLI----DNGVCEITLLGQNVNAWRGKGL 240
           GC   C FC      G E    +  +    R+ +         E+   G        +  
Sbjct: 14  GCPNHCVFCNQQKINGQETDIRVEDIHRIVREYLKTLPKKSEKEVAFFGGTFTGLSMELQ 73

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300
                T  + +    +I+G+      ++ P  +   +++        +  + L +QS  +
Sbjct: 74  REYLETLQEYMER-GDIQGIR----LSTRPDYIRKEILEQLKKYG--VKAIELGIQSLDE 126

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
            +L+  +R ++  +  + I +I+       +    +VG P    +    T+  +      
Sbjct: 127 EVLRKSDRAYSETQVLESIRQIQDY--GFEVGIQLMVGLPASNLEKEIRTVKTLIACRPD 184

Query: 361 QAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFND 407
            A  +       T          E  K  R    Q    E+ V  + 
Sbjct: 185 TARIYPTLVLADT----------ELEKQYRRGEYQALSLEEAVERSR 221


>gi|217966714|ref|YP_002352220.1| radical SAM protein [Dictyoglomus turgidum DSM 6724]
 gi|217335813|gb|ACK41606.1| Radical SAM domain protein [Dictyoglomus turgidum DSM 6724]
          Length = 589

 Score = 56.9 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 49/303 (16%), Positives = 100/303 (33%), Gaps = 46/303 (15%)

Query: 153 DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQ----EGCDKFCTFCVVPYTRGIEI-SRSL 207
           D  +      + +    Y  K      +        GC   CTFC +   +G ++ SR+ 
Sbjct: 272 DLDLIYSLPFMRLPHPSYKEKIPAFETVKTSIVSHRGCFGSCTFCSLNLHQGWQVISRTE 331

Query: 208 SQVVDEARKLIDNGVCEITLL---GQNVNAWRGK--------GLDGEKCTFSD------- 249
             +++E  +L  +   + T+    G   N ++ +              C F D       
Sbjct: 332 RSILEEVYRLTRHKEFKGTISDVGGPTANMYKLRCKIHNVPGSCPERDCLFPDVCKYLEI 391

Query: 250 -------LLYSLSEIKGLVRLRYTTSHPRDM---SDCLIKAHGDLDVLMPYLHLPVQSGS 299
                  LL  + EI+ +  +   +    D+    +  I+       +  +L    +   
Sbjct: 392 DHSAQINLLRKIKEIEKVKHVFIASGIRYDIALKDEEYIREIIREGYIGGHLSTAPEHVK 451

Query: 300 DRILKSMNRRHTAYEYRQIIDR----IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
             +L+ M +      Y + ++     ++    ++ I   FI   PG T  D       V 
Sbjct: 452 GHVLEIMKKP-KFEVYERFVEAFEKNLKKYGKELYIIPYFISAHPGATIKDAWDLAMYVK 510

Query: 356 KIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERL--------LCLQKKLREQQVSFND 407
            +G+       Y+P   TP S         ++ E++          LQ+ L + +   N 
Sbjct: 511 GLGHYLEQIQDYTPLPLTPASCSFYTEYHTLRKEKIYVAKTYEERRLQRALVQHKDKKNR 570

Query: 408 ACV 410
             +
Sbjct: 571 EFL 573


>gi|190890029|ref|YP_001976571.1| oxygen-independent coprophorphyrinogen III oxidase [Rhizobium etli
           CIAT 652]
 gi|190695308|gb|ACE89393.1| oxygen-independent coprophorphyrinogen III oxidase protein
           [Rhizobium etli CIAT 652]
          Length = 400

 Score = 56.9 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 30/202 (14%), Positives = 66/202 (32%), Gaps = 16/202 (7%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C   C +C           + + Q    A   +        + G          L G   
Sbjct: 33  CAAKCPYC---DFNSHVRHQPVDQ-ERFAAAFLKETAAVRAMSGPKTVTS--IFLGGGTP 86

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY-------LHLPVQSG 298
           +        + + G+ R  +      +++     +  + +    Y       + L VQ+ 
Sbjct: 87  SLMKPETVAAILDGIAR-HWHVPDGIEITMEANPSSVEAERFRGYRAAGVNRVSLGVQAL 145

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           +DR LK + R H   +  + I   R + P ++   D I   P +T +++ + +       
Sbjct: 146 NDRDLKFLGRLHDVADALKAIRLAREIFPRMSF--DLIYARPDQTVEEWESELKQAISYA 203

Query: 359 YAQAFSFKYSPRLGTPGSNMLE 380
                 ++ +   GTP   + +
Sbjct: 204 VDHLSLYQLTIEEGTPFYGLHK 225


>gi|113460461|ref|YP_718523.1| lipoyl synthase [Haemophilus somnus 129PT]
 gi|112822504|gb|ABI24593.1| lipoate biosynthesis protein A (lipoate synthase) [Haemophilus
           somnus 129PT]
          Length = 314

 Score = 56.9 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 33/235 (14%), Positives = 75/235 (31%), Gaps = 15/235 (6%)

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           + +    E  S  +       G   F+ +   C + C FC V    G  +     +    
Sbjct: 55  HGLHSVCEEASCPNLHECFNHGTATFMILGAICTRRCPFCDV--AHGKPLPPDPDEPKKL 112

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
           A  + D  +  + +   +    R    D     F++ +  + ++   +++       R  
Sbjct: 113 AETIQDMKLRYVVITSVD----RDDLPDRGAGHFAECVKEIRKLNPGIKIEILVPDFRGR 168

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
            +  ++   D     P +         R+ + +          +++   +++ P I   S
Sbjct: 169 IEQALEKLKDNP---PDVFNHNLENVPRLYREIRPGADYNWSLKLLKEFKTIFPHIPTKS 225

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP--RLGTPGSNMLEQVDENV 386
             +VG  GET+++    M  +   G       +Y    R   P +     V    
Sbjct: 226 GIMVGL-GETNEEILQVMQDLRDNGVTMLTLGQYLQPSRHHLPVARY---VPPEE 276


>gi|331004226|ref|ZP_08327705.1| TIGR01212 family radical SAM protein [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330411499|gb|EGG90910.1| TIGR01212 family radical SAM protein [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 298

 Score = 56.9 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 35/212 (16%), Positives = 77/212 (36%), Gaps = 24/212 (11%)

Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDEARK-----------LIDNGVCEITLLGQNVNAWR 236
             C+FC        E + +   + ++  K            +     +     Q+ +   
Sbjct: 38  GGCSFCSEK--GSGEFAINAENIAEQIEKAKALVCAKMPSSVKESERKYIAYFQSFSNTY 95

Query: 237 GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD-MSDCLIKAHGDLDVLMP-YLHLP 294
           G      K   S    +   I+G   +  + +   D  S+ +  +   L+ + P ++ L 
Sbjct: 96  GDT----KRLISLFKEA---IQGDEIVALSIATRPDCFSEEMFDSLESLNKIKPVWIELG 148

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           +Q+ ++   ++ NR +T  ++ +  D ++  +  I +    I+G PGET +D  AT   +
Sbjct: 149 LQTVNENTARAFNRGYTLDDFEKTYDELKKRK--IEVIVHMILGLPGETKEDMYATSKYL 206

Query: 355 DKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
            K               GT  +   E+    +
Sbjct: 207 SKKKIDGIKIHGLHILKGTRLAKEYEKHPFKI 238


>gi|290893254|ref|ZP_06556241.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071]
 gi|290557236|gb|EFD90763.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071]
          Length = 321

 Score = 56.9 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 38/195 (19%), Positives = 69/195 (35%), Gaps = 19/195 (9%)

Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDE--ARKLIDNGVCEITLLG-----QNVNAWRGKGL 240
             CTFC    +      R+L   V     R  +     +   +       N +A   +  
Sbjct: 52  GGCTFCSAAGSGDFAGDRALDLKVQFQQVRDKMQTKWKDGKCIAYFQAFTNTHAPVAE-- 109

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL-DVLMPYLHLPVQSGS 299
                   +   ++    G+V L    + P  + D +++   +L +    +L L +QS  
Sbjct: 110 ------LREKFETVLNEPGVVGLSI-ATRPDCLPDDVVEYLAELNERTYLWLELGLQSAH 162

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
           D   + +NR H    Y + + +++    +I I +  I G P ET +    T   V + G 
Sbjct: 163 DETGRLINRAHDYDCYLEGVRKLQK--HNIRICTHIINGLPKETPEMMMETTRKVVESGV 220

Query: 360 AQAFSFKYSPRLGTP 374
                       GTP
Sbjct: 221 DGIKIHLLHLLKGTP 235


>gi|209527544|ref|ZP_03276046.1| Radical SAM domain protein [Arthrospira maxima CS-328]
 gi|209492032|gb|EDZ92385.1| Radical SAM domain protein [Arthrospira maxima CS-328]
          Length = 910

 Score = 56.9 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 57/323 (17%), Positives = 104/323 (32%), Gaps = 30/323 (9%)

Query: 110 AQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGG 169
           A    E++L     V  V  PQ Y    +        +        V       SI    
Sbjct: 193 AGLTREQLLLDLAQVPGVYVPQFYDMAGDGSIHPNHQEVPTRIIRRVATPMPAYSITMVP 252

Query: 170 YNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVD-EARKLIDNGVCEITLL 228
           + +       L ++ GC + C FC                VV+  A+ +   G  E +LL
Sbjct: 253 FVQTVHDRLALEVRRGCTRGCRFCQPGMLTRPARDVEPEAVVEAIAKGMKATGYNEFSLL 312

Query: 229 GQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLM 288
                               ++   L      V L   +       + +    G      
Sbjct: 313 S-----LSCSDYLSLPAVGMEIKNRLR--DSNVSLSLPSQRVDRFDENIANIIGGTR--S 363

Query: 289 PYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDD-- 346
             L    ++G+ R+   +N+  T  E  + +        D  I   F++G PGETD D  
Sbjct: 364 SGLTFAPEAGTQRMRDVINKGLTNEELLRGVKTAYDQGWD-KIKLYFMIGLPGETDTDVL 422

Query: 347 -FRATMD-LVDKIGYAQAF-------SFKYSPRLGTP------GSNMLEQVDENVKAE-- 389
               T+  L+ +    +            ++P+  TP       +   E+  + +KAE  
Sbjct: 423 GIAETVRWLLRECREHRRRPLSINLTISNFTPKPHTPFQWHSVSTKEFERKQQLLKAEFH 482

Query: 390 RLLCLQKKLREQQVSFNDACVGQ 412
           RL  ++    + ++S  +  +G+
Sbjct: 483 RLKGVKANFTDVRISAMEDFIGR 505


>gi|284030255|ref|YP_003380186.1| Radical SAM domain-containing protein [Kribbella flavida DSM 17836]
 gi|283809548|gb|ADB31387.1| Radical SAM domain protein [Kribbella flavida DSM 17836]
          Length = 643

 Score = 56.9 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 54/312 (17%), Positives = 93/312 (29%), Gaps = 54/312 (17%)

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
             V+D D     K   + + +  + R       + I  GC + C FC           RS
Sbjct: 240 HTVMDLDAWPYPKKPLVPLAETVHERYS-----VEIFRGCTRGCRFCQAGMITRPVRERS 294

Query: 207 LSQVVDEARKLIDN-GVCEITLLG---------QNVNAWRGKGLDGEKCTFSDLLYSLSE 256
           ++ + D     +   G  E+ LL           +V    G   +G   + S     +  
Sbjct: 295 ITTIGDMVENGLKQSGFEEVGLLSLSSADHSEIADVAKGLGDRYEGSNVSLSLPSTRVDA 354

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
                            +  L             L    + GSDR+ K +N+  +  +  
Sbjct: 355 ----------------FNITLANEFSRNGR-RSGLTFAPEGGSDRMRKVINKMVSEEDLI 397

Query: 317 QIIDRIRSVRPDIA-ISSDFIVGFPGETDDDFRATMDLVDKI---------GYAQAFSF- 365
           + +    +       +   F+ G P ETD+D  A  DL  ++               +  
Sbjct: 398 RTVAA--AYSHGWRQVKLYFMCGLPTETDEDVLAIADLAKRVIATGREVSGRNDIRCTVS 455

Query: 366 --KYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQII----EVLIE 419
              + P+  TP      Q+       RL  L   +R          +G         +IE
Sbjct: 456 IGGFVPKPHTP-FQWTAQLGVEETDARLAKLGAAIR--SDKKYAKAIGFRYHDGKPGIIE 512

Query: 420 KHGKEKGKLVGR 431
                  + VGR
Sbjct: 513 GLLSRGDRRVGR 524


>gi|118594151|ref|ZP_01551498.1| coproporphyrinogen III oxidase [Methylophilales bacterium HTCC2181]
 gi|118439929|gb|EAV46556.1| coproporphyrinogen III oxidase [Methylophilales bacterium HTCC2181]
          Length = 392

 Score = 56.9 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 37/230 (16%), Positives = 84/230 (36%), Gaps = 15/230 (6%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C   C +C   +      +   S + D+ +   D  + +ITL              G   
Sbjct: 24  CIHKCPYCD--FNSHELRN---SSIKDQEQIYTDALLNQITLSADYSGRTIHSIFFGGGT 78

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDC-----LIKAH--GDLDVLMPYLHLPVQSG 298
                  +++ I   +  ++T ++  +++       + KA+  G  D+ +  + L +QS 
Sbjct: 79  PSLFSPEAINRIILAISHQFTLANDCEVTLEANPGTIDKAYFKGYKDIGVNRVSLGIQSF 138

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           ++  LKS+ R H   +  +     R +  +I +  D +   P +T  D    + +   I 
Sbjct: 139 NNIHLKSLERIHDKEQAYEAAQWARQLFDNINL--DLMFALPNQTKSDLIHDIKIALAIR 196

Query: 359 YAQAFSFKYSPRLGTPGSNMLE-QVDENVKAERLLCLQKKLREQQVSFND 407
                 +  +    T        Q +E+  A+    + + L++Q     +
Sbjct: 197 PDHISYYHLTIEPNTLFHKHPPSQPNEDDSADMGDIIIETLKQQNFDHYE 246


>gi|74313558|ref|YP_311977.1| hypothetical protein SSON_3158 [Shigella sonnei Ss046]
 gi|73857035|gb|AAZ89742.1| Fe-S oxidoreductase [Shigella sonnei Ss046]
          Length = 739

 Score = 56.9 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 48/297 (16%), Positives = 97/297 (32%), Gaps = 58/297 (19%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDN--GVCEIT--LLGQNVNA 234
           + I  GC   C+FC +    G  I SRS   +++E   + D   G   +   L G   N 
Sbjct: 380 VNIMRGCFGGCSFCSITEHEGRIIQSRSEDSIINEIEAIRDTVPGFTGVISDLGGPTANM 439

Query: 235 WR----------------------GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
           +                          +D       +L     ++KG+ ++   +    D
Sbjct: 440 YMLHCKSPRAEQTCRRLSCVYPDICPHMDTNHEPTINLYRRARDLKGIKKILIASGVRYD 499

Query: 273 MSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRRH--TAYEYRQIIDRI-RSVRP 327
           ++    +   +L    +  YL +  +   +  L  M +    +   ++++ D   +    
Sbjct: 500 IAVEDPRYIKELATHHVGGYLKIAPEHTEEGPLSKMMKPGMGSYDRFKELFDTYSKQAGK 559

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGY--AQAFSFKYSPRLGT---------PGS 376
           +  +   FI   PG  D+D       + K  +   Q  +F  SP   +         P +
Sbjct: 560 EQYLIPYFISAHPGTRDEDMVNLALWLKKHRFRLDQVQNFYPSPLANSTTMYYTGKKPLA 619

Query: 377 NMLEQ-----VDENVKAERL-LCLQK--------KLR-EQQVSFNDACVGQIIEVLI 418
            +  +     V +  K  RL   L +         +R   +       +G   + L+
Sbjct: 620 KIGYKSEDVFVPKGDKQRRLHKALLRYHDPANWPLIRPALEAMGKKHLIGSRRDCLV 676


>gi|212544680|ref|XP_002152494.1| lipoic acid synthetase precursor [Penicillium marneffei ATCC 18224]
 gi|306755841|sp|B6QSZ4|LIPA_PENMQ RecName: Full=Lipoyl synthase, mitochondrial; AltName: Full=Lipoate
           synthase; Short=LS; Short=Lip-syn; AltName: Full=Lipoic
           acid synthase; Flags: Precursor
 gi|210065463|gb|EEA19557.1| lipoic acid synthetase precursor [Penicillium marneffei ATCC 18224]
          Length = 425

 Score = 56.9 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 46/254 (18%), Positives = 91/254 (35%), Gaps = 26/254 (10%)

Query: 129 GPQTYYRLPELLE----------RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTA 178
           G + + RLP  L+          R +   R +  +   E+          G + K   TA
Sbjct: 105 GKKEHTRLPSWLKTPIPDSTNYKRIKKDLRGLKLNTVCEEARCPNISDCWGGSDKSAATA 164

Query: 179 FLTIQ-EGCDKFCTFCVVPYTR--GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW 235
            + +  + C + C FC V   R  G        +  + A  L   G+  + L   +    
Sbjct: 165 TIMLMGDSCTRGCRFCSVKTLRTPGPL---DPHEPENTAEALSRWGLGYVVLTSVD---- 217

Query: 236 RGKGLDGEKCTFSDLLYSL-SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP 294
           R    DG    F++ +  +  +  G++    T     D     + A   LDV    +   
Sbjct: 218 RDDLSDGGAHHFAETVIKIKQKAPGILVECLTGDFAGDFDMVALVAKSGLDVYAHNVET- 276

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           V++ +  +     RR T  +  ++++  +  +P +   +  ++GF GET+D     +  +
Sbjct: 277 VEALTPHVRD---RRATFQQSLRVLEAAKRAKPSLITKTSMMLGF-GETEDQMWDALRQL 332

Query: 355 DKIGYAQAFSFKYS 368
                      +Y 
Sbjct: 333 RASNVDVVTFGQYM 346


>gi|183597017|ref|ZP_02958510.1| hypothetical protein PROSTU_00249 [Providencia stuartii ATCC 25827]
 gi|188023673|gb|EDU61713.1| hypothetical protein PROSTU_00249 [Providencia stuartii ATCC 25827]
          Length = 457

 Score = 56.9 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 42/237 (17%), Positives = 81/237 (34%), Gaps = 23/237 (9%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C K C FC         ++R   +  +  + +    +    LL          G  G   
Sbjct: 62  CHKLCYFC----GCNKLVTRQKHKADEYLQVIEKEIIQRAALLKGRTVTQMHWG--GGTP 115

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL-------MPYLHLPVQSG 298
           T+ D    +S +  L++  +  S   +MS  +     +LD++          L + VQ  
Sbjct: 116 TYLD-KAQVSHLVTLLKTHFHFSDDVEMSIEVDPREIELDMIDHLRSEGFNRLSMGVQDF 174

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS-DFIVGFPGETDDDFRATMDLVDKI 357
           +  +   +NR         +I+R +        +S D I G P +T + F  T+  V ++
Sbjct: 175 NKDVQVLVNREQDEDFIFALINRAKET--GFTSTSIDLIYGLPKQTPESFAFTLKKVIEL 232

Query: 358 GYAQAFSFKYSPRLGTPGSNM---LEQVDENVKAERLLCLQKKLREQQVSFNDACVG 411
              +   F Y+       +      E +    +   L  LQ+ +           +G
Sbjct: 233 SPDRLSVFNYAHLPNLFAAQRKIKDEDLPSAEQK--LDILQETIATLTSEGYQ-FIG 286


>gi|146307636|ref|YP_001188101.1| coproporphyrinogen III oxidase [Pseudomonas mendocina ymp]
 gi|145575837|gb|ABP85369.1| coproporphyrinogen III oxidase, anaerobic [Pseudomonas mendocina
           ymp]
          Length = 460

 Score = 56.9 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 80/221 (36%), Gaps = 15/221 (6%)

Query: 159 KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC----VVPYTRGIEISR--SLSQVVD 212
            F+ L  +      +R ++ ++ +   C   C +C    V+   RG  +     L + ++
Sbjct: 37  PFDLLHALRDSRKARRPLSLYVHVPF-CAHICYYCACNKVITKDRGRALPYLEKLEREIE 95

Query: 213 EARKLIDNG--VCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270
              + +D    + ++   G          L             L +  G   +       
Sbjct: 96  IVSRYVDKDQPIEQLHFGGGTPTFLSHDELRRLMLHLRQHFNLLDDDSGDYSIEIDPREA 155

Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330
              +  L++  G        + L VQ     + +++NR  T  E R I++  R+++   +
Sbjct: 156 DWSTMGLLRELG-----FNRVSLGVQDLDPEVQRAVNRLQTLEETRAIVEAARTLQFR-S 209

Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
           ++ D I G P +T + F  T+  V  +   +   F Y+   
Sbjct: 210 VNIDLIYGLPKQTPERFARTVAEVIALQPDRLSLFNYAHLP 250


>gi|327265063|ref|XP_003217328.1| PREDICTED: MYCBP-associated protein-like [Anolis carolinensis]
          Length = 1025

 Score = 56.9 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 35/205 (17%), Positives = 76/205 (37%), Gaps = 21/205 (10%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQ--NVNAWRGKGLDGE 243
           C+K C++C         I R++ +     R  +      +    Q   + +       G 
Sbjct: 102 CEKRCSYCN----FNKYIPRNIDE--SRMRNCLIQEARTLIQFSQVQRITSVY---FGGG 152

Query: 244 KCTFSDLLYSLSEIKGLVRLRY------TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQS 297
             + +  L   + +  + R  +       T      S   +         +  L + +QS
Sbjct: 153 TPSLASPLTIAAVLDAISRDVFVAEGTEITLEANPTSADALCLAEFQKAGVNRLSVGIQS 212

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
            +D  L+ + R H+AYE  + ++  + + P   IS D I G P +T   +   ++ +  +
Sbjct: 213 LNDAELQLLGRNHSAYEALRTLEEAKKLFPG-RISVDLIFGLPDQTTASWVQDLEALLAM 271

Query: 358 GYAQAFSFKYSPRLGTPGSNMLEQV 382
                  ++ +   GT   ++ +QV
Sbjct: 272 CDDHISLYQLTLERGT---SLFKQV 293


>gi|307354278|ref|YP_003895329.1| Radical SAM domain-containing protein [Methanoplanus petrolearius
           DSM 11571]
 gi|307157511|gb|ADN36891.1| Radical SAM domain protein [Methanoplanus petrolearius DSM 11571]
          Length = 548

 Score = 56.9 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 57/328 (17%), Positives = 110/328 (33%), Gaps = 55/328 (16%)

Query: 144 RFGKRVVDTDYSVEDKFERLSI-VDGGYNRKRGVTAFLTIQEGCDKF----CTFCVVPYT 198
           R G+   + DY   D+F      +   +     +   L    GC ++    C+FC   + 
Sbjct: 144 REGESYGNFDYERIDEFAVAGAGIVQKHPGFPDIICELETARGCSRYVSGGCSFC-TEFL 202

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL---- 254
            G    R+ + V  E + L D+GV    +  Q      G       C   + +  L    
Sbjct: 203 YGEPEFRNAAGVHAEVKALYDSGVRHFRVGRQPDLLTYGVRGGEFPCPDPEKIEHLFSGI 262

Query: 255 -SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP-------VQSGSDRILKSM 306
            S   GL  L     +PR++     +A  +    +   H P       ++S    +++  
Sbjct: 263 RSAAPGLKTLHIDNINPRNI-FEHEEAAKEALKAIVRWHTPGDVAAFGMESADPVVVREN 321

Query: 307 NRRHTAYEYRQIIDRIRSV-------RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
           N +    +  + I+ +  V        P +    +F++G  GE+   +   +  ++++  
Sbjct: 322 NLKALPEQVMRAIEIVNEVGGMRENGIPHLLPGLNFVLGLKGESPATYDLNLRFLNEVLS 381

Query: 360 A-----QAFSFKYSPRLGTPGSN-----MLEQVDENVKAERLL-----CLQKKLREQQVS 404
           +     +    +  P  GT         M + +    K +         L K        
Sbjct: 382 SGLLVRRVNIRQVMPFEGTKAWEENSIGMYDDLFRKFKEDARKNFDHPMLMKVFPR---- 437

Query: 405 FNDACVGQIIE-VLIEKHGKEKGKLVGR 431
                 G I+  V+IE+ G       GR
Sbjct: 438 ------GTILRDVIIEEEG---NTSFGR 456


>gi|167754055|ref|ZP_02426182.1| hypothetical protein ALIPUT_02343 [Alistipes putredinis DSM 17216]
 gi|167658680|gb|EDS02810.1| hypothetical protein ALIPUT_02343 [Alistipes putredinis DSM 17216]
          Length = 376

 Score = 56.9 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 47/235 (20%), Positives = 87/235 (37%), Gaps = 24/235 (10%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDE--------ARKLIDNGVCEITLLGQNVNAWRG 237
           C + C +C   + +  E+ R +  V+D            L D  +  +   G   +    
Sbjct: 11  CRRICAYCD--FFKSAEVGR-VDSVLDAMGRELDGAVDWLADRRIRTVYFGGGTPSLCDP 67

Query: 238 KGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQS 297
             L G     +D   +L +  G+       ++P DM++  ++A          L + VQS
Sbjct: 68  ARLQG----LADRAATLLDCSGVEEFTVE-ANPDDMTEEWLEALARTG--ANRLSVGVQS 120

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
             D  L+ MNRRHT  +  + + R ++      ++ D I G PG      +  ++    +
Sbjct: 121 FDDDELRLMNRRHTGAQAVEAVRRAQAA-GFANLTIDLIFGVPGFGGKVLQRNLEQALAL 179

Query: 358 GYAQAFSFKYSPRLGTPGSNMLE-----QVDENVKAERLLCLQKKLREQQVSFND 407
           G     ++  +    T     LE     +VDE V     L + + L        +
Sbjct: 180 GVQHISAYHLTVEKNTAFGRRLERGRFSEVDEQVSEREYLEVHRTLTGAGFEHYE 234


>gi|304404735|ref|ZP_07386396.1| cobalamin B12-binding domain protein [Paenibacillus curdlanolyticus
           YK9]
 gi|304346542|gb|EFM12375.1| cobalamin B12-binding domain protein [Paenibacillus curdlanolyticus
           YK9]
          Length = 530

 Score = 56.9 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 52/366 (14%), Positives = 109/366 (29%), Gaps = 52/366 (14%)

Query: 42  LRMEDMFFSQGYERVNSMDDADLI--------VLNTCHIREKAAEKVYSFLGRIRNLKNS 93
            ++       G     ++++  +I        +++T ++R                   +
Sbjct: 110 EKIIRTIAKTGCTTEETLEELGIIQPDFVGIALISTSNVR------------AAVKTGKA 157

Query: 94  RIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK------ 147
              +  +  ++  G    A  E+ L+ +P V+ VV       + +++E     K      
Sbjct: 158 IKDQFPNTKIIYGGHHVSALPEQFLKENPWVDYVVIGDGIDIVEDIVEGKVKDKILYQGF 217

Query: 148 ----RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
               R    D  + +           Y      +      +GC + C FCV     G E 
Sbjct: 218 KPMERFPLLDMDIIEAISYPIDQQYSYPSFGRKSTDFMFSKGCFRKCEFCV---AGGQED 274

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           +R    VV     LID  +      G      +                +L +  G    
Sbjct: 275 NR----VVFLNWDLIDEQLSLFKQCGIEELIIQDDAFIFGGKNVMARKLALMKKYGFYWQ 330

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL--------KSMNRRHTAYEY 315
                    ++D +     + +   P     +    +  L         +M  R+T   +
Sbjct: 331 NSGGIDFELLTDDITDLFIEYNKSGPGRLTGMYIPFNPRLWNKGKSATDTMINRYTR--H 388

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGET----DDDFRATMDLVDKIGYAQAFSFKYSPRL 371
              + R+R     + I +  IVG P +T     +D  +   ++ +     A +   +   
Sbjct: 389 FNNLKRLRE-EGGVYIFTSEIVGEPNQTWETILEDIESHKQMILEGFLDTALTLSATMLP 447

Query: 372 GTPGSN 377
           GT    
Sbjct: 448 GTKWYE 453


>gi|224499243|ref|ZP_03667592.1| hypothetical protein LmonF1_05932 [Listeria monocytogenes Finland
           1988]
          Length = 321

 Score = 56.9 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 38/195 (19%), Positives = 70/195 (35%), Gaps = 19/195 (9%)

Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDE--ARKLIDNGVCEITLLG-----QNVNAWRGKGL 240
             CTFC    +     +R+L   V     R  +     +   +       N +A   +  
Sbjct: 52  GGCTFCSAAGSGDFAGNRALDLKVQFQQVRDKMQTKWKDGKCIAYFQAFTNTHAPVAE-- 109

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL-DVLMPYLHLPVQSGS 299
                   +   ++    G+V L    + P  + D +++   +L +    +L L +QS  
Sbjct: 110 ------LREKFENVLNEPGVVGLSI-ATRPDCLPDDVVEYLAELNERTYLWLELGLQSAH 162

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
           D   + +NR H    Y + + +++    +I I +  I G P ET +    T   V + G 
Sbjct: 163 DETGRLINRAHDYDCYVEGVRKLQK--HNIRICTHIINGLPKETPEMMMETTRKVVESGV 220

Query: 360 AQAFSFKYSPRLGTP 374
                       GTP
Sbjct: 221 DGIKIHLLHLLKGTP 235


>gi|116193017|ref|XP_001222321.1| hypothetical protein CHGG_06226 [Chaetomium globosum CBS 148.51]
 gi|88182139|gb|EAQ89607.1| hypothetical protein CHGG_06226 [Chaetomium globosum CBS 148.51]
          Length = 388

 Score = 56.9 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 30/186 (16%), Positives = 71/186 (38%), Gaps = 13/186 (6%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V  +R         +  + A  L   G+  + L   +    R    DG   
Sbjct: 131 CTRGCRFCSVKTSRAPP-PLDPHEPENTAEALARWGLGYVVLTSVD----RDDLADGGAR 185

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV-LMPYLHLPVQSGSDRILK 304
            F++ +  + + K    L    +     +  ++K   +  + +  +    V+  +  +  
Sbjct: 186 HFAETIRRI-KAKKPTMLVEALTGDFWGNLEMVKVVAESGLDVYAHNVETVEGLTPYVRD 244

Query: 305 SMNRRHTAYEYRQIIDRIRSVR--PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
              RR T  +  ++++ ++ V+    I   +  ++G  GET+++   T+  + K+     
Sbjct: 245 ---RRATFRQSLKVLEHVKEVKGKEGIITKTSIMLGL-GETEEEIWETLRELRKVDVDVV 300

Query: 363 FSFKYS 368
              +Y 
Sbjct: 301 TFGQYM 306


>gi|315303475|ref|ZP_07874062.1| radical SAM protein, family [Listeria ivanovii FSL F6-596]
 gi|313628157|gb|EFR96703.1| radical SAM protein, family [Listeria ivanovii FSL F6-596]
          Length = 321

 Score = 56.9 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 38/195 (19%), Positives = 70/195 (35%), Gaps = 19/195 (9%)

Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDE--ARKLIDNGVCEITLLG-----QNVNAWRGKGL 240
             CTFC    +     +R+L   V     R  +     +   +       N +A   +  
Sbjct: 52  GGCTFCSAAGSGDFAGNRALDLKVQFQQVRDKMQTKWKDGKCIAYFQAFTNTHAPVTE-- 109

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL-DVLMPYLHLPVQSGS 299
                   +   ++    G+V L    + P  + D +++   +L +    +L L +QS  
Sbjct: 110 ------LREKFETVLNEPGVVGLSI-ATRPDCLPDDVVEYLAELNERTYLWLELGLQSAH 162

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
           D   + +NR H    Y + + ++++   +I I +  I G P ET +    T   V   G 
Sbjct: 163 DETGQLINRAHDYDCYLEGVKKLQA--HNIRICTHIINGLPKETPEMMMETTQKVVDSGV 220

Query: 360 AQAFSFKYSPRLGTP 374
                       GTP
Sbjct: 221 DGIKIHLLHLLKGTP 235


>gi|253996875|ref|YP_003048939.1| Radical SAM domain-containing protein [Methylotenera mobilis JLW8]
 gi|253983554|gb|ACT48412.1| Radical SAM domain protein [Methylotenera mobilis JLW8]
          Length = 716

 Score = 56.9 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 45/265 (16%), Positives = 84/265 (31%), Gaps = 37/265 (13%)

Query: 151 DTDYSVEDKFERLSIV---DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRS 206
           + DY  +  + R       D        +   + I  GC   CTFC +    G  I SRS
Sbjct: 352 EMDYVYDMPYARKPHPAYKDAKIPAWEMIRFSVNIMRGCFGGCTFCSITEHEGRIIQSRS 411

Query: 207 LSQVVDEARKLIDN--GVCEIT--LLGQNVNAWR----------------------GKGL 240
            + ++ E  ++ D   G   +   L G   N +R                       + L
Sbjct: 412 EASILKEVEEIRDKVDGFTGVISDLGGPTANMYRIACKSESIEKNCRKLSCVYPAVCENL 471

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL--DVLMPYLHLPVQSG 298
           + +      L      IKG+ ++   +    D++    +   +L    +  YL +  +  
Sbjct: 472 NTDHSALIQLYRKARAIKGVKKILIGSGLRYDLAVKSPEYVKELVQHHVGGYLKIAPEHS 531

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA----ISSDFIVGFPGETDDDFRATMDLV 354
            + +L  M +      Y +          +      +   FI   PG TD+D       +
Sbjct: 532 EENVLSKMMKPGMGA-YDEFKAMFEKFSAEAGKKQYLIPYFIAAHPGTTDNDMLNLALWL 590

Query: 355 DKIGYAQAFSFKYSPRLGTPGSNML 379
            K  +       ++P      + M 
Sbjct: 591 KKYDFKLDQVQTFTPTPMAMATAMY 615


>gi|241760523|ref|ZP_04758616.1| coproporphyrinogen dehydrogenase [Neisseria flavescens SK114]
 gi|241319027|gb|EER55529.1| coproporphyrinogen dehydrogenase [Neisseria flavescens SK114]
          Length = 606

 Score = 56.9 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 35/202 (17%), Positives = 73/202 (36%), Gaps = 14/202 (6%)

Query: 186 CDKFCTFC-VVPYTRGIEIS-----RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
           C   C FC           S     + + ++  EA    D G       G       G  
Sbjct: 62  CANHCVFCGFYRNAWKDSQSSVYTDKIIEEMAAEAEVRTDKGKIRAVYFG------GGTP 115

Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
                     L+ +  +   L      T   R     L KA   ++     + + VQ+ +
Sbjct: 116 TALLTEDLVRLIRACYQYLPLAEDCEFTIEGRMSHFDLEKAQACIEAGANRISIGVQTFN 175

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
             I + + R+H+  E  + + ++  +  D  I +D + G P +TDD ++  +    ++  
Sbjct: 176 TAIRRRLGRKHSGDEAFEYLAKLCEL--DAVIVADLMFGLPNQTDDVWQNDIARAAELPL 233

Query: 360 AQAFSFKYSPRLGTPGSNMLEQ 381
           +   ++ ++     P + M+E+
Sbjct: 234 SGLDTYAFNLYPMLPINRMIEK 255


>gi|171743009|ref|ZP_02918816.1| hypothetical protein BIFDEN_02134 [Bifidobacterium dentium ATCC
           27678]
 gi|283455975|ref|YP_003360539.1| coproporphyrinogen III oxidase [Bifidobacterium dentium Bd1]
 gi|171278623|gb|EDT46284.1| hypothetical protein BIFDEN_02134 [Bifidobacterium dentium ATCC
           27678]
 gi|283102609|gb|ADB09715.1| Coproporphyrinogen III oxidase [Bifidobacterium dentium Bd1]
          Length = 402

 Score = 56.9 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 40/240 (16%), Positives = 78/240 (32%), Gaps = 25/240 (10%)

Query: 186 CDKFCTFC------VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
           C + C +C       +    G       + V+ E   + D            V    G  
Sbjct: 11  CMRRCGYCDFNTYTAIDMGAGASRGNYANMVIREMAIVRDWQERHGI-----VEPPAGTV 65

Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDC------LIKAHGDL-DVLMPYLH 292
             G           L  +   VR  +  +   +++              +L D     + 
Sbjct: 66  FFGGGTPTILKAADLVAMLDAVRETWGIADNAEITTEANPDTVNADYVRELADGGFNRIS 125

Query: 293 LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352
             +QS    +LK+++R HT       I    +    +  S D I G PGE+ DD+R +++
Sbjct: 126 FGMQSAVPHVLKTLDRTHTPENVEAGISAANAA--GMRSSVDLIYGAPGESLDDWRTSVN 183

Query: 353 LVDKIGYAQAFSFKYSPRLGTP-----GSNMLEQVDENVKAERLLCLQKKLREQQVSFND 407
               +G     ++  +    T       + ML   D++ +A +       L    + + +
Sbjct: 184 TALDLGVNHISAYALTVAPNTTMGRRIAAGMLPTPDDDDEAAKYEIADALLSAAGLEWYE 243


>gi|169632188|ref|YP_001705924.1| hypothetical protein ABSDF0205 [Acinetobacter baumannii SDF]
 gi|169150980|emb|CAO99605.1| conserved hypothetical protein [Acinetobacter baumannii]
          Length = 792

 Score = 56.9 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 47/264 (17%), Positives = 84/264 (31%), Gaps = 35/264 (13%)

Query: 151 DTDYSVEDKFERLSIV---DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRS 206
           + DY  +  + RL      D  +     +   + I  GC   CTFC +    G  I +RS
Sbjct: 386 EMDYVFDLPYARLPHPAYGDARFPAFDMIKFSVNIMRGCFGGCTFCSITEHEGRIIQNRS 445

Query: 207 LSQVVDEARKLIDNGVCEITLLGQ------NVNAWRGKGLDGEK---------------- 244
               + E  K+ D       ++        N+     K  + EK                
Sbjct: 446 EDSTLREIEKIRDTAPNFTGIISDLGGPTANMYRLHCKDPEIEKNCRKPSCVYPGVCQNL 505

Query: 245 ----CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL--DVLMPYLHLPVQSG 298
                    L      IKG+ ++   +    D++    +   +L    +  YL +  +  
Sbjct: 506 HTDHAPLVQLYRKARAIKGVKKILIGSGLRYDLAVLNPEYVKELVQHHVGGYLKIAPEHT 565

Query: 299 SDRILKSMNRR--HTAYEYRQIIDRI-RSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
               L  M +    T   ++Q+ DR  +    +  +   FI   PG +D D       + 
Sbjct: 566 EQGPLSKMMKPGIGTYDRFKQMFDRFSKEAGKEQYLIPYFIAAHPGTSDYDMMHLAIWLK 625

Query: 356 KIGYAQAFSFKYSPRLGTPGSNML 379
           K G+       + P      + M 
Sbjct: 626 KNGFRVDQVQTFYPSPMATATTMY 649


>gi|161506262|ref|YP_001573374.1| hypothetical protein SARI_04457 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160867609|gb|ABX24232.1| hypothetical protein SARI_04457 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 723

 Score = 56.9 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 46/261 (17%), Positives = 88/261 (33%), Gaps = 48/261 (18%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDNGVCEITLL----GQNVNA 234
           + I  GC   C+FC +    G  I SRS   +++E   + D       ++    G   N 
Sbjct: 380 INIMRGCFGGCSFCSITEHEGRIIQSRSEDSIINEIEAIRDTVPEFTGVISDLGGPTANM 439

Query: 235 WR----------------------GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
           +                          +D +     +L     E+KG+ ++   +    D
Sbjct: 440 YMLRCKSPRAEQTCRRLSCVYPDICPHMDTDHTPTINLYRRARELKGIKKILIASGVRYD 499

Query: 273 MSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRRH--TAYEYRQIIDRI-RSVRP 327
           ++    +   +L    +  YL +  +   +  L  M +    +   ++++ D   +    
Sbjct: 500 IAVEDPRYIKELASHHVGGYLKIAPEHTEEGPLSKMMKPGMGSYDRFKELFDLYSKQAGK 559

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGY--AQAFSFKYSPR-----LGTPGSNMLE 380
           +  +   FI   PG  D+D       + +  +   Q  +F  SP      +   G N L 
Sbjct: 560 EQYLIPYFISAHPGTRDEDMVNLALWLKRHRFRLDQVQNFYPSPLANSTTMYYTGKNPLG 619

Query: 381 QV---DENV------KAERLL 392
           +V    E V      K  RL 
Sbjct: 620 KVGYKSEEVVVPKGDKQRRLH 640


>gi|253576646|ref|ZP_04853974.1| conserved hypothetical protein [Paenibacillus sp. oral taxon 786
           str. D14]
 gi|251844060|gb|EES72080.1| conserved hypothetical protein [Paenibacillus sp. oral taxon 786
           str. D14]
          Length = 317

 Score = 56.9 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 32/190 (16%), Positives = 61/190 (32%), Gaps = 9/190 (4%)

Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVC--EITLLGQNVNAWRGKGLDGEKC 245
             CTFC    +     SR    V   A       +       +G                
Sbjct: 53  GGCTFCSARGSGDFAGSRRDDLVTQFATIRDRQHLKWPHAKYIG---YFQAYTNTYAPVE 109

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL-DVLMPYLHLPVQSGSDRILK 304
              +   ++ E  G+V L    + P  + D ++    +L +    ++ + +Q+  +    
Sbjct: 110 VLREYYEAILEQPGVVGLSI-ATRPDCLPDDVVDYLAELNERTYLWVEMGLQTIHESTST 168

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
            +NR H    Y   ++++R+    I + +  I G P ET +    T   V  +       
Sbjct: 169 LINRAHDTQCYLDAVEKLRAR--GIRVCTHIIYGLPQETHEMMLETGRAVANMDVQGIKI 226

Query: 365 FKYSPRLGTP 374
                   TP
Sbjct: 227 HLLHLMRKTP 236


>gi|297538789|ref|YP_003674558.1| Radical SAM domain-containing protein [Methylotenera sp. 301]
 gi|297258136|gb|ADI29981.1| Radical SAM domain protein [Methylotenera sp. 301]
          Length = 712

 Score = 56.9 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 46/294 (15%), Positives = 88/294 (29%), Gaps = 47/294 (15%)

Query: 132 TYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGV-------------TA 178
                  L+++    +  ++         E   + D  Y RK                  
Sbjct: 319 NPGNARALVQKHGDREVWLNPPPIPLTTKEMDYVYDMPYARKPHPAYGNAKIPAWEMIRF 378

Query: 179 FLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDN--GVCEIT--LLGQNVN 233
            + I  GC   CTFC +    G  I SRS + ++ E  ++ D   G   +   L G   N
Sbjct: 379 SVNIMRGCFGGCTFCSITEHEGRIIQSRSEASILKEVEEIRDKVDGFTGVISDLGGPTAN 438

Query: 234 AWR----------------------GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPR 271
            +R                       + L+ +      L      IKG+ ++   +    
Sbjct: 439 MYRIACKSETIEKNCRKLSCVYPGVCENLNTDHTALIQLYRKARAIKGVKKILIGSGVRY 498

Query: 272 DMSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329
           D++    +   +L    +  YL +  +   + +L  M +      Y +          + 
Sbjct: 499 DLAVKSPEYVKELVQHHVGGYLKIAPEHSEENVLSKMMKPG-MDAYDEFKAMFEKFSAEA 557

Query: 330 A----ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
                +   FI   PG T+ D       + K  +       ++P      + M 
Sbjct: 558 GKKQYLIPYFIAAHPGTTELDMLNLALWLKKYDFKLDQVQTFTPTPMAMATAMY 611


>gi|254442954|ref|ZP_05056430.1| radical SAM protein, TIGR01212 family [Verrucomicrobiae bacterium
           DG1235]
 gi|198257262|gb|EDY81570.1| radical SAM protein, TIGR01212 family [Verrucomicrobiae bacterium
           DG1235]
          Length = 321

 Score = 56.9 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 30/205 (14%), Positives = 65/205 (31%), Gaps = 14/205 (6%)

Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGV------CEITLLGQNVNAWRGKGLD 241
             C++C V      E  RSL+ V ++  + ++           +     N N +      
Sbjct: 58  GGCSYCNVDSFTPKENRRSLASVREQVIEGMERARRKYGAEKFMVYFQPNTNTYSDVDTL 117

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL-DVLMPYLHLPVQSGSD 300
               +      ++    G V      + P  +    ++        L   +   ++S  D
Sbjct: 118 ERIYS-----QAVDAAPGEVVGLTIGTRPDCIDREKLEMLKRRFGHLYVSIEYGLESMRD 172

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
            +L  +NR  T  E+   ++          + +  I G PGE + D+ A  D ++++   
Sbjct: 173 DVLAGINRGTTHEEFVAAVELTAEY--GFEVCAHTIFGLPGEAEGDWLAVADELNRLPIR 230

Query: 361 QAFSFKYSPRLGTPGSNMLEQVDEN 385
                      G+  +         
Sbjct: 231 HVKLHHLHVVKGSILAKRYRDEPFE 255


>gi|193222195|emb|CAL60317.2| putative Fe-S oxidoreductase [Herminiimonas arsenicoxydans]
          Length = 508

 Score = 56.9 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 30/206 (14%), Positives = 62/206 (30%), Gaps = 12/206 (5%)

Query: 179 FLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK 238
           ++    GC   C FC+    +       +   + E   L   G      + +  N     
Sbjct: 165 YVEASRGCPFKCEFCLSALDKTA-WPFDIDLFLAELEVLHARGARLFKFVDRTFNLNI-- 221

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPR---DMSDCLIKAHGDLDVLMPYLHLPV 295
                K +   + + L +++   +             + D L +             + +
Sbjct: 222 -----KTSLKIMQFFLDKLEANPQDPVFAHFEVVPDHLPDALKEGIMKFPPGTLQFEIGI 276

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
           QS +  +   ++R+    +  + I  +        +  D I G PGE    F    D + 
Sbjct: 277 QSFNPEVQALVSRKQNNEKAAENIRWLCEHS-HAHLHVDLIAGLPGEDIASFARGFDRLL 335

Query: 356 KIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           ++   +          GTP     EQ
Sbjct: 336 ELQPHEIQFGILKRLRGTPIIRHTEQ 361


>gi|134093371|ref|YP_001098446.1| hypothetical protein HEAR0081 [Herminiimonas arsenicoxydans]
          Length = 483

 Score = 56.9 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 30/206 (14%), Positives = 62/206 (30%), Gaps = 12/206 (5%)

Query: 179 FLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK 238
           ++    GC   C FC+    +       +   + E   L   G      + +  N     
Sbjct: 140 YVEASRGCPFKCEFCLSALDKTA-WPFDIDLFLAELEVLHARGARLFKFVDRTFNLNI-- 196

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPR---DMSDCLIKAHGDLDVLMPYLHLPV 295
                K +   + + L +++   +             + D L +             + +
Sbjct: 197 -----KTSLKIMQFFLDKLEANPQDPVFAHFEVVPDHLPDALKEGIMKFPPGTLQFEIGI 251

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
           QS +  +   ++R+    +  + I  +        +  D I G PGE    F    D + 
Sbjct: 252 QSFNPEVQALVSRKQNNEKAAENIRWLCEHS-HAHLHVDLIAGLPGEDIASFARGFDRLL 310

Query: 356 KIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           ++   +          GTP     EQ
Sbjct: 311 ELQPHEIQFGILKRLRGTPIIRHTEQ 336


>gi|332087270|gb|EGI92402.1| radical SAM superfamily protein [Shigella dysenteriae 155-74]
          Length = 365

 Score = 56.9 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 48/297 (16%), Positives = 98/297 (32%), Gaps = 58/297 (19%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDN--GVCEIT--LLGQNVNA 234
           + I  GC   C+FC +    G  I SRS   +++E   + D   G   +   L G   N 
Sbjct: 6   VNIMRGCFGGCSFCSITEHEGRIIQSRSEDSIINEIEAIRDTVPGFTGVISDLGGPTANM 65

Query: 235 WR----------------------GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
           +                          +D       +L     ++KG+ ++   +    D
Sbjct: 66  YMLRCKSPRAEQTCRRLSCVYPDICPHMDTNHEPTINLYRRARDLKGIKKILIASGVRYD 125

Query: 273 MSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRRH--TAYEYRQIIDRI-RSVRP 327
           ++    +   +L    +  YL +  +   +  L  M +    +   ++++ D   +    
Sbjct: 126 IAVEDPRYIKELATHHVGGYLKIAPEHTEEGPLSKMMKPGMGSYDRFKELFDTYSKQAGK 185

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGY--AQAFSFKYSPRLGT---------PGS 376
           +  +   FI   PG  D+D       + K  +   Q  +F  SP   +         P +
Sbjct: 186 EQYLIPYFISAHPGTRDEDMVNLALWLKKHRFRLDQVQNFYPSPLANSTTMYYTGKNPLA 245

Query: 377 NMLEQ-----VDENVKAERL-LCLQK--------KLREQQVSF-NDACVGQIIEVLI 418
            +  +     V +  K  RL   L +         +R+   +      +G   + L+
Sbjct: 246 KIGYKSEDVFVPKGDKQRRLHKALLRYHDPANWPLIRQALEAMGKKHLIGSRRDCLV 302


>gi|307328439|ref|ZP_07607614.1| Radical SAM domain protein [Streptomyces violaceusniger Tu 4113]
 gi|306885851|gb|EFN16862.1| Radical SAM domain protein [Streptomyces violaceusniger Tu 4113]
          Length = 640

 Score = 56.9 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 74/418 (17%), Positives = 125/418 (29%), Gaps = 72/418 (17%)

Query: 52  GYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVV----VAG 107
           G+   N    AD I    C +     + V      +R  K      G D L+        
Sbjct: 150 GHAAFNPEPIADFI---DCAVIGDGEQAVLDMTAILRAWKAEGRPGGRDELLFRLARTGS 206

Query: 108 CVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVD 167
                  +        +  VV  ++                V+D D     K   + + +
Sbjct: 207 VYVPKFYDVEYLADGRIARVVPNRSGVPWR------VSKHTVMDLDEWPYPKQPLVPLAE 260

Query: 168 GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEIT 226
             + R       + I  GC + C FC           RS++ + +   K +   G  E+ 
Sbjct: 261 TVHERMS-----VEIFRGCTRGCRFCQAGMITRPVRERSITGIGEMVEKGLKATGFEEVG 315

Query: 227 LLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV 286
           LL     +       G+        Y   +I     L   ++     +  L         
Sbjct: 316 LLS---LSSADHTEIGDVAKGLADRYEKDKIG----LSLPSTRVDAFNIDLANELTRNGR 368

Query: 287 LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR-----IRSVRPDIAISSDFIVGFPG 341
               L    + GS+RI K +N+  +  +  + +        R V+        F+ G P 
Sbjct: 369 -RSGLTFAPEGGSERIRKVINKMVSEEDLIRTVATAYGNGWRQVK------LYFMCGLPT 421

Query: 342 ETDDDFRATMDLVDKI---------GYAQAFSF---KYSPRLGTPGSNMLEQVDENVKAE 389
           ETDDD     D+  K+               +     + P+  TP      Q+       
Sbjct: 422 ETDDDVLQIADMATKVIAKGREVSGKNDIRCTVSIGGFVPKPHTP-FQWAPQLSAEETDA 480

Query: 390 RLLCLQKKLR---------------------EQQVSFNDACVGQIIEVLIEKHGKEKG 426
           RL  L++K+R                     E  +S  D  VG +I  + E  G+  G
Sbjct: 481 RLEKLREKIRGDKKYGRSIGFRYHDGKPGIVEGLLSRGDRRVGAVIRAVYEDGGRFDG 538


>gi|78356044|ref|YP_387493.1| hypothetical protein Dde_0997 [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78218449|gb|ABB37798.1| conserved hypothetical protein [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 368

 Score = 56.9 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 36/89 (40%), Gaps = 2/89 (2%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +L L +QS SD  L+ +NR H    + + +         + + +  I G PGET  DF  
Sbjct: 170 WLELGLQSSSDATLRRINRGHDFACFVKAVHMAHER--GLKVCAHLIAGLPGETGADFAR 227

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           T+  V  +  A            T  + M
Sbjct: 228 TVADVAALPVAGVKFHGLYVAEHTAVAAM 256


>gi|319440651|ref|ZP_07989807.1| lipoyl synthase [Corynebacterium variabile DSM 44702]
          Length = 315

 Score = 56.9 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 39/217 (17%), Positives = 81/217 (37%), Gaps = 20/217 (9%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC +   R   + R   +    A  + +  +   T+ G      R    D    
Sbjct: 47  CSRRCDFCQIKSGRPSPLDR--DEPRRVAENIREMDLRYATITGVT----RDDLDDEGAW 100

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
            +++++  + E+     +   T       D L +       +  +    V     RI K 
Sbjct: 101 LYAEIVRKVHELNPNTGVENLTPDFSAKPDLLAEVFEARPEVFAHNLETV----PRIFKR 156

Query: 306 MNRRHTAYEYRQIIDRIRSVRP-DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
           +     A+ Y + ++ IR+ R   +   S+ I+G  GET ++ ++++  +   G      
Sbjct: 157 IRP---AFRYDRSLEVIRAARDFGLVTKSNLILGM-GETAEEVQSSLTDLKDAGCDIITI 212

Query: 365 FKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQ 401
            +Y  R     +NM   ++  VK E  +   +  +E 
Sbjct: 213 TQYL-RP----TNMHHPIERWVKPEEFMEHSEFAKEL 244


>gi|310779566|ref|YP_003967899.1| Radical SAM domain protein [Ilyobacter polytropus DSM 2926]
 gi|309748889|gb|ADO83551.1| Radical SAM domain protein [Ilyobacter polytropus DSM 2926]
          Length = 362

 Score = 56.9 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 41/277 (14%), Positives = 87/277 (31%), Gaps = 43/277 (15%)

Query: 134 YRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRG-------VTAFLTIQEGC 186
            +  E+L + +  +  +    + ED  +   I +  Y  K             +     C
Sbjct: 1   MKTAEILNKEKLTREDLLYLMNTEDPKDLNLIYEKAYEIKEKEVGKKVFYRGLIEFSNNC 60

Query: 187 DKFCTFCVVPYTRGIEISRSLS--QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK 244
            K C +C +  + G      +    +++ AR + +N    + L         G+  D E 
Sbjct: 61  IKDCNYCGIRRSSGNVERFFMDKKDILESARWIYENNYGSLVLQS-------GERQDEEF 113

Query: 245 CTF-SDLLYSLSEIKGLV-----------RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLH 292
             F  D++  + E+ G             R  Y           L++       L   +H
Sbjct: 114 ILFVEDVIKEIKELSGGKLGITLSLGEQNRETYKRWFDAGAHRYLLRVETSNKELYKKMH 173

Query: 293 LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352
                         + +H        +  +R++     + +  ++G PG++ +D    + 
Sbjct: 174 P------------QDGKHNFENRIICLKELRNI--GFQVGTGVMIGLPGQSTEDLVEDLL 219

Query: 353 LVDKIGYAQAFSFKYSPRLGTP-GSNMLEQVDENVKA 388
             +K+         Y     TP G    ++V    K 
Sbjct: 220 FYEKLDVDMIGMGPYIISDETPMGEEYRDKVMSKEKR 256


>gi|262068133|ref|ZP_06027745.1| oxygen-independent coproporphyrinogen III oxidase [Fusobacterium
           periodonticum ATCC 33693]
 gi|291378221|gb|EFE85739.1| oxygen-independent coproporphyrinogen III oxidase [Fusobacterium
           periodonticum ATCC 33693]
          Length = 348

 Score = 56.9 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 31/180 (17%), Positives = 59/180 (32%), Gaps = 17/180 (9%)

Query: 174 RGVTAFLTIQE-GCDKFCTFCVVPYTRGIEISRSLSQVVDEA----RKLIDNGVCEITLL 228
           +     + I   GC   C FC      G E   SL  + +      + L  N + E+   
Sbjct: 2   KHYNIPVFISHFGCPNACVFCNQKKINGRETDVSLDDLKNIIDSYLKTLPKNSIKEVAFF 61

Query: 229 GQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLM 288
           G       G  ++ +K     +   +           T     D    ++         +
Sbjct: 62  GGTFT---GISMELQKQYLEVVKKYIDNADVEGVRISTRPECIDD--EILTQLKKYG--V 114

Query: 289 PYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFR 348
             + L +QS  D +LK+  R ++    ++  D I+       +    ++G P     DF+
Sbjct: 115 KTIELGIQSLDDEVLKATGRHYSYDVVKKSSDLIKKY--GFTLGVQLMIGLP---KADFK 169


>gi|260767344|ref|ZP_05876283.1| hypothetical protein VFA_000397 [Vibrio furnissii CIP 102972]
 gi|260617667|gb|EEX42847.1| hypothetical protein VFA_000397 [Vibrio furnissii CIP 102972]
          Length = 310

 Score = 56.9 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 40/198 (20%), Positives = 74/198 (37%), Gaps = 11/198 (5%)

Query: 181 TIQEGCDKFCTFCVV-PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
           TI  G    CTFC V  +      ++S+   + +    +      +       + +    
Sbjct: 39  TIGRG---GCTFCNVASFADEASQAKSIEDQLTDRAGEVQRAKKYLAYFQAYTSTYAEVQ 95

Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
           +     +  +     ++I GL  +        D    L+  +        +L L +Q+ +
Sbjct: 96  V---LKSMYEQALKAADIVGLC-VGTRPDCVPDAVLELLAEYAQQG-FEIWLELGLQTAN 150

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
           D+ LK +NR H    Y +I  R R++   I + +  IVG P E  DD  AT++ V  +G 
Sbjct: 151 DQTLKRINRGHDFACYAEITRRARAL--GIKVCTHLIVGLPKEGRDDNLATLEQVLAVGT 208

Query: 360 AQAFSFKYSPRLGTPGSN 377
                       G+  + 
Sbjct: 209 DGIKLHGLHIVEGSTMAK 226


>gi|195127882|ref|XP_002008396.1| GI13471 [Drosophila mojavensis]
 gi|306755880|sp|B4KYY0|LIAS_DROMO RecName: Full=Lipoyl synthase, mitochondrial; AltName: Full=Lipoate
           synthase; Short=LS; Short=Lip-syn; AltName: Full=Lipoic
           acid synthase; Flags: Precursor
 gi|193920005|gb|EDW18872.1| GI13471 [Drosophila mojavensis]
          Length = 364

 Score = 56.9 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 34/189 (17%), Positives = 62/189 (32%), Gaps = 21/189 (11%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQV---VDEARKLIDNGVCEITLLGQNVNAWRGKGLDG 242
           C + C FC V   R          V   V+ A+ +   G+  I L   +    R    DG
Sbjct: 130 CTRGCRFCSVKTARAP----PPLDVNEPVNTAKAISSWGLDYIVLTSVD----RDDLPDG 181

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
                ++ +  +      + +       R      +K           L +   +     
Sbjct: 182 GSKHIAETVREIKARNSNIFVECLVPDFRG-DLECVKTIASCG-----LDVYAHNIETVE 235

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVR---PDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
             +   R     YRQ +  +R  +   P++   S  ++G  GETD +   TM  + ++G 
Sbjct: 236 KLTPFVRDRRAHYRQTLQVLREAKNFNPNLITKSSIMLGL-GETDAEVEQTMQDLREVGV 294

Query: 360 AQAFSFKYS 368
                 +Y 
Sbjct: 295 ECLTLGQYM 303


>gi|188996946|ref|YP_001931197.1| lipoic acid synthetase [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188932013|gb|ACD66643.1| lipoic acid synthetase [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 280

 Score = 56.9 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 34/207 (16%), Positives = 76/207 (36%), Gaps = 11/207 (5%)

Query: 161 ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN 220
           E  +  + G    R    F+ + + C + C +C V +  G   +    +  + A  +   
Sbjct: 30  EEANCPNIGNCFSRKTATFMIMGDVCTRNCPYCNVSH--GKPQALDPQEPGNVANAVKTL 87

Query: 221 GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKA 280
           G+  + +   +    R    DG    F++++  + EI   + +       +   + L   
Sbjct: 88  GLKHVVITSVD----RDDLPDGGASHFANVIKKVREINPGITIEVLIPDFKGSIESLKTV 143

Query: 281 HGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFP 340
                 ++ +    V+     + K +  +    +  +I+  I+ + P     S F+VGF 
Sbjct: 144 LDANPEVVNHNIETVK----ELYKIIRPQGNYEKSLKILRSIKEISPKTISKSGFMVGF- 198

Query: 341 GETDDDFRATMDLVDKIGYAQAFSFKY 367
           GET +     M+ + K         +Y
Sbjct: 199 GETKEQIINLMEDLYKNNVEILTIGQY 225


>gi|160886570|ref|ZP_02067573.1| hypothetical protein BACOVA_04581 [Bacteroides ovatus ATCC 8483]
 gi|260173331|ref|ZP_05759743.1| biotin synthase [Bacteroides sp. D2]
 gi|315921604|ref|ZP_07917844.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|156108455|gb|EDO10200.1| hypothetical protein BACOVA_04581 [Bacteroides ovatus ATCC 8483]
 gi|313695479|gb|EFS32314.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 350

 Score = 56.9 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 29/216 (13%), Positives = 65/216 (30%), Gaps = 21/216 (9%)

Query: 169 GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI-EISR-SLSQVVDEARKLIDNGVCEIT 226
            +  K  +   + I   C   C +C +       E  R S   +++  ++  + G     
Sbjct: 45  HFGNKIYIRGLIEISNCCRNNCYYCGIRKGNPNIERYRLSRESILNCCKQGYELGFRTFV 104

Query: 227 LLGQNVNAWRGKGLDGEKCTFSDLLYSLS---EIKGLVRLRYTTSHPRDMSDCLIKAHGD 283
           L G    A     ++             +    +    R  Y        +  L++    
Sbjct: 105 LQGGEDPALTNDQIEMTVARIRQEYPDCAITLSLGEKSREAYERFFRAGANRYLLRHETY 164

Query: 284 LDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGET 343
            ++    LH P +    R L+              +  ++ +       +  +VG PG+T
Sbjct: 165 NELHYRQLH-PAEMSDKRRLQC-------------LADLKEI--GYQTGTGIMVGSPGQT 208

Query: 344 DDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            +     +  ++K+         + P   TP +   
Sbjct: 209 VEHIIEDLLFIEKLRPEMIGIGPFLPHHDTPFAEYP 244


>gi|170743104|ref|YP_001771759.1| cobalamin B12-binding domain-containing protein [Methylobacterium
           sp. 4-46]
 gi|168197378|gb|ACA19325.1| cobalamin B12-binding domain protein [Methylobacterium sp. 4-46]
          Length = 619

 Score = 56.9 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 68/350 (19%), Positives = 110/350 (31%), Gaps = 88/350 (25%)

Query: 102 LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDT--------- 152
           +V++ G       E+ LR  P  + VV  Q      ELLE  R    + D          
Sbjct: 202 IVIMGGTHVSGLPEDALRDCP-ADYVVTQQGDVTFVELLEALRKNSAIEDVAGIVFRRGG 260

Query: 153 --------------------DYSVEDKFERLSIVDGGYNRK--RGVTAFLTIQEGCDKFC 190
                               DYS+ D     S    G  R+   G   +     GCD  C
Sbjct: 261 AIVQTRPRGFLPTMDLFSQPDYSLVDFSLYDSPFHSGGKRQVDHGHLTYGFTTIGCDVRC 320

Query: 191 TFCVVPYTRG-----IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA----------- 234
           TFC +P  +G      E+S           KL++ G+ E  +   ++             
Sbjct: 321 TFCTIPRVQGGWLKMNEVSFD-----KYLAKLVEIGITEFIVEDDHLFHDPEWALKVCDL 375

Query: 235 ---WRGKGLDGEKCTFSDLLYSLSEI-----------KGLVRLRYTTSHPRDMSDCLIKA 280
              ++    +        L+  L E+           + L              D ++K 
Sbjct: 376 LEKYKLPWFEEGGVALFSLIALLPEVSEDFILAKTGREKLFEPLLRAKRSGLTLDRMVKR 435

Query: 281 HGDLDVLMPYLHLPVQSGSDRILKSMNRR--HTAYEYRQIIDRIRSVRPDIAISSD--FI 336
             +       L+L V+S +   L + N+   +T   Y Q +  I     D AI +    +
Sbjct: 436 MRESG--CYSLYLAVESSNLEALGTANKPPINTFEYYTQRVLNI---LYDNAIHATGGLM 490

Query: 337 VGFPG---------ETDDDFRATMD---LVDKIGYAQAFSFKYSPRLGTP 374
            GF           ET +D   T +    +   G +    F ++P  G P
Sbjct: 491 FGFVNPTAGRKLYVETREDIERTFEYGRFLMAAGASYMNPFIFTPLPGAP 540


>gi|237743503|ref|ZP_04573984.1| oxygen-independent coproporphyrinogen III oxidase [Fusobacterium
           sp. 7_1]
 gi|229433282|gb|EEO43494.1| oxygen-independent coproporphyrinogen III oxidase [Fusobacterium
           sp. 7_1]
          Length = 348

 Score = 56.9 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 33/213 (15%), Positives = 68/213 (31%), Gaps = 14/213 (6%)

Query: 174 RGVTAFLTIQE-GCDKFCTFCVVPYTRGIEISRSLSQVVDEA----RKLIDNGVCEITLL 228
           +     + I   GC   C FC      G E   SL  + +      + L  N + ++   
Sbjct: 2   KHYNIPVFISHFGCPNACVFCNQKKINGRETDVSLDDLKNIIDSYLKTLPKNSIKQVAFF 61

Query: 229 GQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLM 288
           G       G  ++ +K     +   +           T     D    ++         +
Sbjct: 62  GGTFT---GISMNLQKEYLEVVKKYIDNNDVEGVRISTRPECIDD--EILTQLKKYG--V 114

Query: 289 PYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFR 348
             + L +QS  D++LK+  R +T    ++  D I++      +    ++G P        
Sbjct: 115 KTIELGIQSLDDKVLKATGRNYTYDVVKKSCDLIKNY--GFELGIQLMIGLPKSDYKSDL 172

Query: 349 ATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
            +     ++    A  +      GT    M ++
Sbjct: 173 QSAIKSLELNPDIARIYPTLVIKGTELELMYKK 205


>gi|315169986|gb|EFU14003.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Enterococcus faecalis TX1342]
          Length = 382

 Score = 56.9 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 49/254 (19%), Positives = 98/254 (38%), Gaps = 28/254 (11%)

Query: 177 TAFLTIQEGCDKFCTFCVV--PYTRGIEISRSLSQVVDEARKLI----DNGVCEITLLGQ 230
           +A++ I   C+  C +C     +  G  +   +  ++ E +       +  +  I + G 
Sbjct: 5   SAYIHIPF-CEHICYYCDFNKVFLEGQPVDEYIQSLLKEIQLTQALYPEQEMKTIYIGGG 63

Query: 231 NVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT-SHPRDMSDCLIKAHGDLDVLMP 289
              +   K LD        +   L       R  +T  ++P D++   ++   +    + 
Sbjct: 64  TPTSLSAKQLD---VLLKGVREQL---TFDDRNEFTVEANPGDLTQEKLQVMKNYG--VN 115

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI-RSVRPDIAISSDFIVGFPGETDDDFR 348
            L + VQ+  DR+LK + R+HTA +  + +  + +    +++I  D I   PG+T + FR
Sbjct: 116 RLSMGVQTFDDRLLKKIGRKHTAEDVYETMKFLEKENFTNVSI--DLIYALPGQTLESFR 173

Query: 349 ATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE----QVDENVKA-----ERLLCLQKKLR 399
            T+     +       +       T   N +     Q+ E         E +  ++KK R
Sbjct: 174 DTLTRALALDLPHYSLYSLILENKTMFMNWVRQGRLQLPEEEIEAQMFDETIEAMEKKGR 233

Query: 400 EQQVSFNDACVGQI 413
            Q    N A  G+ 
Sbjct: 234 HQYEVSNFALTGKE 247


>gi|302390783|ref|YP_003826604.1| Radical SAM domain protein [Thermosediminibacter oceani DSM 16646]
 gi|302201411|gb|ADL08981.1| Radical SAM domain protein [Thermosediminibacter oceani DSM 16646]
          Length = 426

 Score = 56.9 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 28/207 (13%), Positives = 65/207 (31%), Gaps = 17/207 (8%)

Query: 176 VTAFLTIQEGCDKFCTFCVVPYTRGIE-ISR-SLSQVVDEARKLIDNGVCEITLLGQNVN 233
           +   +     C K C +C +          R +  +++  A ++   G+  + L      
Sbjct: 142 IRGGIEFSNYCRKNCNYCGLRRANTSLLRYRMTPEEIIKAAVEMRKLGLSTVILQS---- 197

Query: 234 AWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHL 293
              G+     +    ++L  +    G+      T    +     ++A            L
Sbjct: 198 ---GEDPWYTEEKMVEILRGIKSETGMR----ITMSIGERPRHELEAFRKAG--ANNYLL 248

Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
            ++S +  + K  +         + I  ++ +       S  IVG PG+  +     +  
Sbjct: 249 RIESANREVFKLAHPDDDYDVRVKNIRDLKEL--GYVTGSGCIVGLPGQRPEHLAEDIVF 306

Query: 354 VDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           +  +G        + P   TP  N+  
Sbjct: 307 LRDMGINMVGLGPFLPARNTPFENLPP 333


>gi|256027059|ref|ZP_05440893.1| oxygen-independent coproporphyrinogen III oxidase [Fusobacterium
           sp. D11]
 gi|289765043|ref|ZP_06524421.1| oxygen-independent coproporphyrinogen III oxidase [Fusobacterium
           sp. D11]
 gi|289716598|gb|EFD80610.1| oxygen-independent coproporphyrinogen III oxidase [Fusobacterium
           sp. D11]
          Length = 348

 Score = 56.9 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 33/213 (15%), Positives = 68/213 (31%), Gaps = 14/213 (6%)

Query: 174 RGVTAFLTIQE-GCDKFCTFCVVPYTRGIEISRSLSQVVDEA----RKLIDNGVCEITLL 228
           +     + I   GC   C FC      G E   SL  + +      + L  N + ++   
Sbjct: 2   KHYNIPVFISHFGCPNACVFCNQKKINGRETDVSLDDLKNIIDSYLKTLPKNSIKQVAFF 61

Query: 229 GQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLM 288
           G       G  ++ +K     +   +           T     D    ++         +
Sbjct: 62  GGTFT---GISMNLQKEYLEVVKKYIDNNDVEGVRISTRPECIDD--EILTQLKKYG--V 114

Query: 289 PYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFR 348
             + L +QS  D++LK+  R +T    ++  D I++      +    ++G P        
Sbjct: 115 KTIELGIQSLDDKVLKATGRNYTYDVVKKSCDLIKNY--GFELGIQLMIGLPKSDYKSDL 172

Query: 349 ATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
            +     ++    A  +      GT    M ++
Sbjct: 173 QSAIKSLELNPDIARIYPTLVIKGTELELMYKK 205


>gi|295401394|ref|ZP_06811365.1| lipoic acid synthetase [Geobacillus thermoglucosidasius C56-YS93]
 gi|312109646|ref|YP_003987962.1| lipoic acid synthetase [Geobacillus sp. Y4.1MC1]
 gi|294976609|gb|EFG52216.1| lipoic acid synthetase [Geobacillus thermoglucosidasius C56-YS93]
 gi|311214747|gb|ADP73351.1| lipoic acid synthetase [Geobacillus sp. Y4.1MC1]
          Length = 298

 Score = 56.9 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 33/214 (15%), Positives = 74/214 (34%), Gaps = 13/214 (6%)

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           ++V ++ +  +I +    R+     F+ +   C + C FC V      E+     +    
Sbjct: 37  HTVCEEAKCPNIHECWAARR--TATFMILGNVCTRACRFCAVKTGLPTEL--DWQEPERV 92

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
           A  +    +  + +        R    DG    F++ + ++        +    S    +
Sbjct: 93  AESVRLMNLKHVVVTAV----ARDDLKDGGAAVFAETIRAIRRKNPFTTIEVLPSDMGGV 148

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
            + L         ++ +    V+  +      +  R T     + + R + ++PDI   S
Sbjct: 149 YENLKTLMDARPDILNHNIETVRRLTP----RVRARATYERSLEFLRRAKELQPDIPTKS 204

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
             +VG  GET ++    MD +           +Y
Sbjct: 205 SIMVGL-GETKEEIIEAMDDLRANHVDILTIGQY 237


>gi|20094476|ref|NP_614323.1| Fe-S oxidoreductase [Methanopyrus kandleri AV19]
 gi|19887575|gb|AAM02253.1| Fe-S oxidoreductase [Methanopyrus kandleri AV19]
          Length = 546

 Score = 56.9 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 75/429 (17%), Positives = 142/429 (33%), Gaps = 55/429 (12%)

Query: 53  YERVNSMDDADL------IVLNTCHIREK-----AAEKVYSFLGRIRNLKNSRIKEGGDL 101
           Y  V  +   D+      +V+  C +        A     S + RI +  ++    GG  
Sbjct: 43  YVPVERVRSGDVDLNRFDVVVGICGVHTPGKYLGARPADLSEMLRILSEVDAVTVLGGPA 102

Query: 102 LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFE 161
                    +  GE        V+V+        + +L+          D   S+E+  E
Sbjct: 103 AQ---SGHGRVGGELPETEVEGVDVIARGDVEAVVYDLVSEGSPEAVDPDRRRSIEELRE 159

Query: 162 RL----SIVDGGYNRKRGVTAFLTIQEGCDKF----CTFCVVPYTRGIEISRSLSQVVDE 213
                        +    V A L    GC +F    C+FC      G    R    VV+E
Sbjct: 160 YSVKGAPAAREHVDYPDAVIAELETYRGCPRFLSGGCSFCTEVPRYGEPEFRPPEDVVEE 219

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI--------KGLVRLRY 265
            + L   GV    +  Q           GE         ++ ++          LV L  
Sbjct: 220 VKALYKVGVRRFRVGRQPCVFSYMAEGIGETERPRPNPEAVEKLFRGICTVAPDLVTLHV 279

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLH------LPVQSGSDRILKSMNRRH-TAYEYRQI 318
             ++P  +++  +++     VL+ Y          V++  +R+ +  N    +  E  + 
Sbjct: 280 DNANPAVIAEHPVESREIAKVLVRYGTPGNVVAFGVETFDERVARKNNLNVESKEEVFRA 339

Query: 319 IDRIRSV--------RPDIAISSDFIVGFPGETDDDFRATMDLVDK-----IGYAQAFSF 365
           I+ + SV         P +    +F+ G  GE  + +R   +++ +     +   +    
Sbjct: 340 IEVVASVGGYRGWNGMPYLLPGLNFVCGLIGENRERYRRDEEVLRELVERGLRVRRINVR 399

Query: 366 KYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACV---GQIIEVL-IEKH 421
              P  GT       +  E  + ER+   ++ +RE+        V   G ++  L +E  
Sbjct: 400 NVVPFPGTEMGEHGTKWLERNR-ERVAAFKRFVREEVDPVLLRRVLPKGTVLRRLRVEPR 458

Query: 422 GKEKGKLVG 430
             E  + VG
Sbjct: 459 EPEFARQVG 467


>gi|134300714|ref|YP_001114210.1| coproporphyrinogen III oxidase [Desulfotomaculum reducens MI-1]
 gi|134053414|gb|ABO51385.1| coproporphyrinogen III oxidase, anaerobic [Desulfotomaculum
           reducens MI-1]
          Length = 494

 Score = 56.9 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 38/226 (16%), Positives = 78/226 (34%), Gaps = 23/226 (10%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEA----RKLIDNGVCEITLLGQNVNAWRGKGLD 241
           C   C +C  P        R +     +A     ++I   +    LL Q++    G    
Sbjct: 178 CPSRCLYCSFPSYSIK-RHRDMVDPFLKALLQEIQVIGETLRSQGLLVQSIYLGGGTPTS 236

Query: 242 GEKCTFSDLLYSL---SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
                   LL ++    +    + +      P  +++ +     +    +  L +  QS 
Sbjct: 237 LNCEQLQSLLEAIQLSLKDDSTIEMTVEGGRPDTLNEDVFALLANAG--VNRLSINPQSM 294

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           + + L  + R HT  +  + ++  R+ +    ++ D I+G PGET  D   TM+ + ++ 
Sbjct: 295 NQKTLDIIGRAHTVEDIYRSVETARNYKF-PTLNMDLIIGLPGETVQDVARTMESILQLK 353

Query: 359 YAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVS 404
                            SN+          +RL        E+ V+
Sbjct: 354 PENLTVHA---LALKRASNL---------KQRLAEFPLLQAEEAVA 387


>gi|269115424|gb|ACZ26290.1| putative lipoic acid synthetase [Mayetiola destructor]
          Length = 370

 Score = 56.9 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 32/184 (17%), Positives = 67/184 (36%), Gaps = 11/184 (5%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V   R        ++  + A  +   G+  I L   +    R   +DG   
Sbjct: 128 CTRGCRFCSVKTARQPP-PLDPNEPTNTASAIASWGLDYIVLTSVD----RDDLIDGGAH 182

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV-LMPYLHLPVQSGSDRILK 304
             ++ +  + +    + +   +   R  S+C I    +  V +  +    V+  +  +  
Sbjct: 183 HIAECIREIKKQNPRIFVECLSPDFRGNSEC-IGLIANSGVDVFAHNIETVEKLTPFVRD 241

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
              RR T  +   ++   + + P +   S  ++G  GETD+    TM  +  +       
Sbjct: 242 ---RRATYRQTLNVLREAKHINPTLITKSSIMLGL-GETDEQIEQTMADLRSMNVDCLTL 297

Query: 365 FKYS 368
            +Y 
Sbjct: 298 GQYM 301


>gi|217964189|ref|YP_002349867.1| radical SAM protein, family [Listeria monocytogenes HCC23]
 gi|217333459|gb|ACK39253.1| radical SAM protein, family [Listeria monocytogenes HCC23]
 gi|307571244|emb|CAR84423.1| radical SAM family protein [Listeria monocytogenes L99]
          Length = 321

 Score = 56.9 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 41/195 (21%), Positives = 72/195 (36%), Gaps = 19/195 (9%)

Query: 188 KFCTFCVVPYTRGIEISRSLS------QVVDEARKLIDNGVCEITLLG-QNVNAWRGKGL 240
             CTFC    +      R+L       QV D+ +    +G C        N +A   +  
Sbjct: 52  GGCTFCSAAGSGDFAGDRALDLKIQFQQVRDKMQTKWKDGKCIAYFQAFTNTHAPVAE-- 109

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL-DVLMPYLHLPVQSGS 299
                   +   ++    G+V L    + P  + D +++   +L +    +L L +QS  
Sbjct: 110 ------LREKFETVLNEPGVVGLSI-ATRPDCLPDDVVEYLAELNERTYLWLELGLQSAH 162

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
           D   + +NR H    Y + + +++    +I I +  I G P ET +    T   V + G 
Sbjct: 163 DETGRLINRAHDYDCYLEGVRKLQK--HNIRICTHIINGLPKETPEMMMETTRKVVESGV 220

Query: 360 AQAFSFKYSPRLGTP 374
                       GTP
Sbjct: 221 DGIKIHLLHLLKGTP 235


>gi|153806602|ref|ZP_01959270.1| hypothetical protein BACCAC_00872 [Bacteroides caccae ATCC 43185]
 gi|149131279|gb|EDM22485.1| hypothetical protein BACCAC_00872 [Bacteroides caccae ATCC 43185]
          Length = 544

 Score = 56.9 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 53/359 (14%), Positives = 111/359 (30%), Gaps = 54/359 (15%)

Query: 78  EKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLP 137
           E++   + R + L            +V+ G       E  L ++  V+ V   +     P
Sbjct: 70  EQLLHIISRAKAL-------LPHCCIVLGGPEFLGNNEAFLYKNKFVSGVFRGEGEEVFP 122

Query: 138 ELLERA-----------------RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFL 180
           + L+                     G+   +    V +  + +S     +         L
Sbjct: 123 QWLKVWNHSKETWKSITGLCYLDENGRYQDNGIARVMNFSQLVSPEKSCFFNWSKPFVQL 182

Query: 181 TIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL 240
               GC   C FC V        +  L  + +    +  +G+  + +L +  N    +  
Sbjct: 183 ETTRGCFNTCAFC-VSGGEKPVRTIPLEAIRERLNDIHQHGIKNVRVLDRTFNYNNKRAK 241

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300
           +       DL     +I       +   HP  +S+ L +    L   + +L   +QS  +
Sbjct: 242 E-----LLDLFRQYPDI-----CFHLEIHPALLSEELKQELSVLPKGLLHLEAGIQSLKE 291

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFP----GETDDDFRATMDL-VD 355
            +L+   R     +  + +  + S++ ++   +D I G P     E  +D R   +    
Sbjct: 292 SVLQQSRRIGKLSDALEGLKYLCSLK-NMETHADLIAGLPLYHLSEIFEDVRTLAEYGAG 350

Query: 356 KIGYAQAFSFKYSPRLGTPGSNMLEQV--------DENVKAERLLCLQKKLREQQVSFN 406
           +I              GT      E++           V   R + + +      +S  
Sbjct: 351 EIQLESLKL-----LPGTEMRRRAEELGIQYSPLPPYEVLQTREISVDELQTAHYLSRL 404


>gi|153814851|ref|ZP_01967519.1| hypothetical protein RUMTOR_01066 [Ruminococcus torques ATCC 27756]
 gi|145847882|gb|EDK24800.1| hypothetical protein RUMTOR_01066 [Ruminococcus torques ATCC 27756]
          Length = 641

 Score = 56.9 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 41/311 (13%), Positives = 91/311 (29%), Gaps = 47/311 (15%)

Query: 113 EGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFE--RLSIVDGGY 170
             +    +    +   G +      E L   +       +   ++D ++   +      Y
Sbjct: 228 YAKSFYTQYLNTDAFSGKRLAEPYSEHLYVVQNPPSKPLSVTEMDDIYDLPYMRTYHPSY 287

Query: 171 NRKRGVTAFLTI------QEGCDKFCTFCVVPYTRGIEIS-RSLSQVVDEARKLIDNGVC 223
             K G+ A   I        GC   C+FC + + +G  +  RS   ++ EA ++++    
Sbjct: 288 KAKGGIPAISEIRFSLISNRGCFGGCSFCALTFHQGRIVQVRSHESLIKEAEQMVEEKDF 347

Query: 224 EITL-------------------------LGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258
           +  +                           Q +     K +D +   +  LL  L +I 
Sbjct: 348 KGYIHDVGGPTANFRHPSCEKQLRHGVCATKQCLFPAPCKNIDADHSDYVALLRKLRKIP 407

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQ------SGSDRILKSMNRRHTA 312
            + ++   +         L          +   H+  Q        S  +L  M +    
Sbjct: 408 KVKKVFIRS--GIRFDYLLADKKNTFLKELCQYHVSGQLKVAPEHISAPVLSLMGKPEHR 465

Query: 313 YEYRQIIDRIRSVRPDIA----ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
             Y +   + + +   +     +    +   PG T  +     +    +GY       + 
Sbjct: 466 -IYEEFTRQFKKMNERLGMDQYLVPYLMSSHPGSTLKEAVELAEYCRDLGYMPEQVQDFY 524

Query: 369 PRLGTPGSNML 379
           P   T  + M 
Sbjct: 525 PTPSTLSTCMY 535


>gi|150396303|ref|YP_001326770.1| lipoyl synthase [Sinorhizobium medicae WSM419]
 gi|166230443|sp|A6U8F5|LIPA_SINMW RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|150027818|gb|ABR59935.1| lipoic acid synthetase [Sinorhizobium medicae WSM419]
          Length = 323

 Score = 56.9 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 78/220 (35%), Gaps = 11/220 (5%)

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
           R +   +++    E     + G    +    F+ + E C + C FC V    G   +  L
Sbjct: 49  RSIVKSHNLVTVCEEAGCPNIGECWDKKHATFMIMGEICTRACAFCNV--ATGRPNALDL 106

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
            + V+ A+ +   G+  + +   +    R    DG    F  +++++ E      +   T
Sbjct: 107 DEPVNVAKAVKQMGLSHVVITSVD----RDDLEDGGAEHFERVIFAIREASPQTTIEILT 162

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
                    L +       +  +    V   S+ +      R+  +   +++ R++ + P
Sbjct: 163 PDFLRKPGALERVVAAKPDVFNHNLETV--PSNYLTVRPGARY--FHSIRLLQRVKELDP 218

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
            +   S  +VG  GE  ++    MD +           +Y
Sbjct: 219 TMFTKSGIMVGL-GEERNEVLQLMDDLRTADVDFLTIGQY 257


>gi|152978382|ref|YP_001344011.1| lipoyl synthase [Actinobacillus succinogenes 130Z]
 gi|171704380|sp|A6VM79|LIPA_ACTSZ RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|150840105|gb|ABR74076.1| lipoic acid synthetase [Actinobacillus succinogenes 130Z]
          Length = 320

 Score = 56.9 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 28/215 (13%), Positives = 68/215 (31%), Gaps = 12/215 (5%)

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           + +    E  S  +       G   F+ +   C + C FC V    G  +     +    
Sbjct: 61  HGLHSVCEEASCPNLHECFNHGTATFMILGAICTRRCPFCDV--AHGKPLPPDPEEPRKL 118

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
           A  + D  +  + +   +    R    D     F+D +  +  +   +++       R  
Sbjct: 119 AETIQDMKLKYVVITSVD----RDDLPDRGAGHFADCVREIRALNPEIKIEILVPDFRGR 174

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRIL-KSMNRRHTAYEYRQIIDRIRSVRPDIAIS 332
            +  ++   +    +          +   L + +          +++   +++ P I   
Sbjct: 175 IELALEKLKNNPPDV----FNHNLENIPRLYREIRPGADYEWSLKLLREFKAMFPHIPTK 230

Query: 333 SDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           S  +VG  GE +++    M  +   G       +Y
Sbjct: 231 SGLMVGL-GENNEEILQVMRDLRTNGVTMLTLGQY 264


>gi|291550851|emb|CBL27113.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Ruminococcus torques L2-14]
          Length = 385

 Score = 56.9 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 31/204 (15%), Positives = 69/204 (33%), Gaps = 18/204 (8%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C +C      G E      +       ++        L G+     +   L G   
Sbjct: 15  CVRKCNYCDFFSASGTE-----EEQAAYVSAMVQEIQSYQELSGE--YEVQTIFLGGGTP 67

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL-------MPYLHLPVQSG 298
           +       + +I   +   ++ +   +++  +     D++ L       +  L + +QS 
Sbjct: 68  SL-LTPEQIEQIFNAIYHTFSVNENAEITMEMNPGTVDIEKLHAMKAAGVNRLSIGLQSA 126

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS-DFIVGFPGETDDDFRATMDLVDKI 357
            +  LK + R HT  E+ +    I          + D +   PG+T + +  T+  V  +
Sbjct: 127 QNEELKMLGRIHTFEEFLETWKLIEQA--GFKNRNIDLMSALPGQTIESYEDTLSKVLAL 184

Query: 358 GYAQAFSFKYSPRLGTPGSNMLEQ 381
                 ++      GT   +  E+
Sbjct: 185 EPEHISAYSLILEEGTVFYDWYEK 208


>gi|148381494|ref|YP_001256035.1| radical SAM family protein [Clostridium botulinum A str. ATCC 3502]
 gi|153932700|ref|YP_001385869.1| radical SAM family protein [Clostridium botulinum A str. ATCC
           19397]
 gi|153936949|ref|YP_001389276.1| radical SAM family protein [Clostridium botulinum A str. Hall]
 gi|148290978|emb|CAL85114.1| putative radical SAM superfamily protein [Clostridium botulinum A
           str. ATCC 3502]
 gi|152928744|gb|ABS34244.1| radical SAM protein, TIGR01212 family [Clostridium botulinum A str.
           ATCC 19397]
 gi|152932863|gb|ABS38362.1| radical SAM protein, TIGR01212 family [Clostridium botulinum A str.
           Hall]
          Length = 310

 Score = 56.9 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 31/199 (15%), Positives = 65/199 (32%), Gaps = 15/199 (7%)

Query: 188 KFCTFCVVPYT------RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD 241
             C +C    +      R  +I +    +    ++   +            N +    + 
Sbjct: 46  GGCIYCSERGSGDFAGDRNFKIHKQFEDIKKIMKEKWSSDKYIAYFQA-YTNTYAPVNIL 104

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
            EK   +     +  +    R         ++ + L         +  ++ L +Q+ +D 
Sbjct: 105 REKYEEAMSEEGVVALAIATRPDCLDQDVLNLIEEL------SKKIYIWVELGLQTVNDE 158

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
             K +NR +    + + +  +R    DI + S  I G PGET +D   T+  + K+    
Sbjct: 159 TSKIINRGYKLNVFEKAVKDLRERNIDIVVHS--IFGLPGETKEDMVGTVKYISKLDIQG 216

Query: 362 AFSFKYSPRLGTPGSNMLE 380
                      TP   + E
Sbjct: 217 VKFHLLHLLKDTPLVKLYE 235


>gi|307823508|ref|ZP_07653737.1| Radical SAM domain protein [Methylobacter tundripaludum SV96]
 gi|307735493|gb|EFO06341.1| Radical SAM domain protein [Methylobacter tundripaludum SV96]
          Length = 524

 Score = 56.9 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 56/378 (14%), Positives = 117/378 (30%), Gaps = 88/378 (23%)

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF- 145
           I+       +   D  +V  G    +  ++I+   P +++ +  + +   PE+LE+    
Sbjct: 77  IKEACRIAKEVAPDAFLVAGGGFLTSMPQDIMEWIPQIDLGIVGEAFVTWPEVLEKIDNK 136

Query: 146 ----------------GKRVVDTDYSVEDKFERLSIVDG------GYNRKRGVTAF---- 179
                           GK +++    +      L               K   + F    
Sbjct: 137 DTDFSATLGVICRDGDGKPILNNTRPIIRDLNTLPAPAWDLFPLEEVYFKNSASLFSEDA 196

Query: 180 --------LTIQEGCDKFCTFC-------------------VVPYTRGIE-ISRSLSQVV 211
                   +    GC   C +C                    V +T G      S   ++
Sbjct: 197 YRIKRRIDINASYGCSLICRYCWHLGTTGDMLIEKDSNGNNDVVFTYGRNIRYHSPDYII 256

Query: 212 DEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLY------------------ 252
           D  ++L  N  +  +  L +N+          ++    ++                    
Sbjct: 257 DMVKELKKNFNIDFVNFLDENL---MTMDASSKRTWLKEICEKWIAAGLQPSSRRPGGKA 313

Query: 253 -SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
            +  E  G+      TSH       ++K     +    +L   ++S    ILK++ +  T
Sbjct: 314 AAPGEEPGVYWS--GTSHASLHRPEILKLM--YEAGCTHLVYGLESFDPGILKNLGKGTT 369

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
           A +    +     +R  I    + I+GFP E     R T++ + K+G   A     +   
Sbjct: 370 AQKNIDSVGEC--MRSGIMPIPNIIIGFPEEDFQSVRNTINALIKLGI-HARPHFATAYP 426

Query: 372 GTPGSNMLEQVDENVKAE 389
           G+      +   E++K +
Sbjct: 427 GSEWYYTYK---ESIKEQ 441


>gi|297617465|ref|YP_003702624.1| radical SAM protein [Syntrophothermus lipocalidus DSM 12680]
 gi|297145302|gb|ADI02059.1| Radical SAM domain protein [Syntrophothermus lipocalidus DSM 12680]
          Length = 365

 Score = 56.9 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 39/199 (19%), Positives = 67/199 (33%), Gaps = 7/199 (3%)

Query: 185 GCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK 244
           GC   C FC      G E   S   V +   K +       +     V  + G       
Sbjct: 14  GCPHRCVFCQQYRITGSEKPPSPLAVAETIEKGLQQSGASAS-EPVEVAFYGGSFTSLPV 72

Query: 245 CTFSDLLYSLSE--IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
                 L ++      G V     ++ P  +S  +++    ++  +  + L VQS    +
Sbjct: 73  QVMEGYLKAVQPYLATGKVASIRVSTRPDAISVEVLRLL--IEHGVTTVELGVQSLDPEV 130

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           L    R +T  +  +    IR     +A+    ++G P +T +   AT   V K+     
Sbjct: 131 LACAERGYTGRQVWEAAGLIRK--HGLALGIQLMIGLPKDTREKDLATTRDVIKMKPLMV 188

Query: 363 FSFKYSPRLGTPGSNMLEQ 381
             +      GT    M EQ
Sbjct: 189 RIYPTLVLKGTRLHQMWEQ 207


>gi|78484846|ref|YP_390771.1| coproporphyrinogen III oxidase [Thiomicrospira crunogena XCL-2]
 gi|78363132|gb|ABB41097.1| coproporphyrinogen III oxidase, anaerobic [Thiomicrospira crunogena
           XCL-2]
          Length = 460

 Score = 56.9 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 32/195 (16%), Positives = 71/195 (36%), Gaps = 16/195 (8%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           CD  C FC        + S++    +    + ++           + N    +   G   
Sbjct: 63  CDTVCFFCACNKVWTRDRSKTTPY-LARLYQEVEMQAKLF-----DSNRKVDQLHWGGGT 116

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRD----MSDCLIKAHGDLDVLMP-----YLHLPVQ 296
                +  + E+  + R  +           +     +A+ +   L+       + L VQ
Sbjct: 117 PTFINMDEMRELMAVTRKHFNLHDDDSGEYSIEIDPREANKESVKLLRELGFNRMSLGVQ 176

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
                + K++NR  T  +  ++++  R     ++++ D I G P +T+  F AT+D V +
Sbjct: 177 DFDPNVQKAVNRIQTEAQTFEVLEGAREA-GFMSVNVDLIYGLPHQTESGFMATLDKVLE 235

Query: 357 IGYAQAFSFKYSPRL 371
           +   +   F Y+   
Sbjct: 236 VAPDRFSIFNYAHMP 250


>gi|187250793|ref|YP_001875275.1| lipoyl synthase [Elusimicrobium minutum Pei191]
 gi|186970953|gb|ACC97938.1| Lipoic acid synthetase [Elusimicrobium minutum Pei191]
          Length = 297

 Score = 56.9 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 34/202 (16%), Positives = 69/202 (34%), Gaps = 11/202 (5%)

Query: 166 VDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEI 225
            + G    +G T  + + + C + C FC V   +   +   L +    A+ +    +  +
Sbjct: 47  PNRGECFSKGETTIMILGDICTRGCKFCAVNKAKPGPV--DLEEPAKIAQAVKQMNIKYV 104

Query: 226 TLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLD 285
            L        R    DG    F+ ++  + E+   V++       +  +D L        
Sbjct: 105 VLTSPT----RDDLPDGGAAHFAQVITKIKELNYGVKVEPLIPDFQGRADSLKTVLAAKP 160

Query: 286 VLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDD 345
            ++   H             +   +       +I + + + PDI   S  ++G  GETD 
Sbjct: 161 SVL--AHNIETVPDLYSRVRIGADYGRS--LALIKKSKELAPDIFTKSGIMLGL-GETDA 215

Query: 346 DFRATMDLVDKIGYAQAFSFKY 367
             + TM  +   G       +Y
Sbjct: 216 QLKQTMKDLAAHGCDLLTLGQY 237


>gi|50552752|ref|XP_503786.1| YALI0E10571p [Yarrowia lipolytica]
 gi|74633794|sp|Q6C6C6|LIPA_YARLI RecName: Full=Lipoyl synthase, mitochondrial; AltName: Full=Lipoate
           synthase; Short=LS; Short=Lip-syn; AltName: Full=Lipoic
           acid synthase; Flags: Precursor
 gi|49649655|emb|CAG79377.1| YALI0E10571p [Yarrowia lipolytica]
          Length = 351

 Score = 56.9 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 44/233 (18%), Positives = 85/233 (36%), Gaps = 16/233 (6%)

Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQ-EGCDKFCTFCVVPYT 198
           L   R   R +      E+          G + K   TA + +  + C + C FC V   
Sbjct: 68  LHNIREDLRGLGLHTVCEEARCPNIGECWGGSDKSKATATIMLMGDTCTRGCRFCSVKTN 127

Query: 199 R--GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256
           R  G       ++  + A  +   G+  + L   +    R    DG    F+D +  + E
Sbjct: 128 RNPGPL---DPNEPENTAVAISKWGLGYVVLTTVD----RDDLSDGGSWHFADTVKRIKE 180

Query: 257 IKGLVRLRYTTSHPR-DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
               + +   +   R ++      A   LDV    +   V++ +  +     RR T  + 
Sbjct: 181 KAPHILVETLSGDFRGNLDHVTTLAESGLDVFAHNMET-VEALTPFVRD---RRATFQQS 236

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
             ++ + +   PD+   +  ++GF GETD+    T+  +  +G       +Y 
Sbjct: 237 LSVLRQAKVAVPDLITKTSIMLGF-GETDEQVEDTLMQLRGVGVDIVTFGQYM 288


>gi|226944101|ref|YP_002799174.1| coproporphyrinogen III oxidase [Azotobacter vinelandii DJ]
 gi|226719028|gb|ACO78199.1| oxygen-independent coproporphyrinogen III oxidase [Azotobacter
           vinelandii DJ]
          Length = 458

 Score = 56.9 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 46/273 (16%), Positives = 99/273 (36%), Gaps = 43/273 (15%)

Query: 160 FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC----VVPYTRGIEISRSLSQVVDEAR 215
           F+ L+ +      KR ++ ++ I   C   C +C    V+   RG             A+
Sbjct: 38  FKLLNALRESRQAKRPLSIYIHIPF-CAHVCYYCACNKVITKDRGR------------AQ 84

Query: 216 KLIDNGVCEITLLGQNVNAWRGKG---LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
             ++    EI ++ ++++  +      L G   TF      L  +   +R  +  +   D
Sbjct: 85  PYLERLEKEIDIVSRHLSPQQQVEQLHLGGGTPTF-LSHGELQRLMEFLRQHFGFAEKVD 143

Query: 273 MSDCLIKAHGD-------LDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
            S  +     D        ++    + L VQ     + +++NR  +  E   II+  R++
Sbjct: 144 CSIEIDPREADWSTMGLLRELGFNRISLGVQDLDPGVQRAVNRLQSLEETSAIIEAARTL 203

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL-------GTPGSNM 378
               +I+ D I G P +T + F  T++ +  +   +   F Y+              +++
Sbjct: 204 EFR-SINVDLIYGLPKQTPETFTRTVEEIIALQPDRLSVFNYAHLPERFKPQRRISAADL 262

Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVG 411
               D+      L  L   + +   +     +G
Sbjct: 263 PAPADK------LTMLHNSIEQLSAAGYQ-YIG 288


>gi|325963351|ref|YP_004241257.1| coproporphyrinogen III oxidase anaerobic [Arthrobacter
           phenanthrenivorans Sphe3]
 gi|323469438|gb|ADX73123.1| coproporphyrinogen III oxidase, anaerobic [Arthrobacter
           phenanthrenivorans Sphe3]
          Length = 393

 Score = 56.9 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 41/95 (43%), Gaps = 4/95 (4%)

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
           +   +QS    +LK ++R HT     Q++   R     +A+S D I G PGE+  D+R +
Sbjct: 136 VSFGMQSAVPHVLKVLDRTHTPSRVPQVVQWAREA--GLAVSLDLIYGTPGESLADWRHS 193

Query: 351 MDLVDKIGYAQAFSFKYSPRLGTP-GSNM-LEQVD 383
           ++           ++      GT   + M   +V 
Sbjct: 194 LETALSYRPDHISAYALIVEDGTKLAAQMRRGEVP 228


>gi|258623853|ref|ZP_05718807.1| Predicted Fe-S oxidoreductase [Vibrio mimicus VM603]
 gi|262166425|ref|ZP_06034162.1| hypothetical protein VMA_002881 [Vibrio mimicus VM223]
 gi|262170673|ref|ZP_06038351.1| hypothetical protein VII_001485 [Vibrio mimicus MB-451]
 gi|258583842|gb|EEW08637.1| Predicted Fe-S oxidoreductase [Vibrio mimicus VM603]
 gi|261891749|gb|EEY37735.1| hypothetical protein VII_001485 [Vibrio mimicus MB-451]
 gi|262026141|gb|EEY44809.1| hypothetical protein VMA_002881 [Vibrio mimicus VM223]
          Length = 312

 Score = 56.9 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 45/218 (20%), Positives = 78/218 (35%), Gaps = 20/218 (9%)

Query: 181 TIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
           TI  G    CTFC V      E   +S+   + +    I      +       + +    
Sbjct: 39  TIGRG---GCTFCNVASFANEETQQQSIHDQLKDRAGEIKRAKKYLAYFQAYTSTYAEVQ 95

Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
           +     +  +    +++I GL         P  + + L         +  +L L +Q+  
Sbjct: 96  V---LKSMYEQALEVADIVGLCVGTRPDCVPDAVLELLADYVQQGYEI--WLELGLQTAH 150

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
           D  LK +NR H    Y +I  + R++   I + +  IVG PGE   +  +T+  V K+G 
Sbjct: 151 DHTLKRINRGHDFACYAEITAKARAL--GIKVCTHLIVGLPGEGRSENMSTLQQVLKVGT 208

Query: 360 AQAFSFKYSPRLG-TPGSNMLEQVDENVKAERLLCLQK 396
                       G T             +A RL  L++
Sbjct: 209 DGIKLHGLHIVEGSTMAKAW--------RAGRLAVLEQ 238


>gi|332307133|ref|YP_004434984.1| lipoic acid synthetase [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332174462|gb|AEE23716.1| lipoic acid synthetase [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 320

 Score = 56.9 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 30/193 (15%), Positives = 65/193 (33%), Gaps = 10/193 (5%)

Query: 175 GVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA 234
           G   F+ + + C + C FC V    G  +  S  + +  A+ + +  +  + +   +   
Sbjct: 82  GTATFMILGDICTRRCPFCDV--AHGKPLPPSAEEPIKLAKTIAEMQLKYVVITSVD--- 136

Query: 235 WRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP 294
            R    DG    F D + ++ E     ++        D    + KA   L   +P +   
Sbjct: 137 -RDDLRDGGAQHFVDCINAIREHSPSTKIEVLVP---DFRGRMDKALEILKNGVPDVFNH 192

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
                 R+ +             ++ + +   PDI   S  ++G  GE  ++    +  +
Sbjct: 193 NLETIPRLYRECRPGANYQWSLDLLKKFKEQHPDIPTKSGLMMGM-GENKEEIAEVLKDL 251

Query: 355 DKIGYAQAFSFKY 367
                      +Y
Sbjct: 252 RAHDVEMLTLGQY 264


>gi|323699061|ref|ZP_08110973.1| Radical SAM domain protein [Desulfovibrio sp. ND132]
 gi|323458993|gb|EGB14858.1| Radical SAM domain protein [Desulfovibrio desulfuricans ND132]
          Length = 554

 Score = 56.9 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 39/235 (16%), Positives = 84/235 (35%), Gaps = 33/235 (14%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
           L +  GC   C FC   Y         L+++             ++ L+G  +  W    
Sbjct: 224 LEVNRGCPYGCRFCAAGYIYRPPRHAELAELERIVEL---ADPPKVGLVGTALTDW---- 276

Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
                      L  L E K    L  ++     +++ L+    +    +  + L ++  S
Sbjct: 277 -----PDLLPFLKWLHERKKKFSL--SSMRADGVTEELLVYLRE--RGIRTVTLALEGAS 327

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI-- 357
           +R+ + M+++    ++   + R+ +      +    I G+PGETD+D+      + +I  
Sbjct: 328 ERLRRMMSKKLDPNDFLNAV-RLCARYGVNHLKIYMIAGWPGETDEDYAELAGFLGEIVR 386

Query: 358 -----------GYAQAFSFKYS--PRLGTPGSNMLEQVDENVKAERLLCLQKKLR 399
                       + +      S  P+  TP       + E+    R+  L+K ++
Sbjct: 387 IRSEEPGGRKKQFMRITIGVSSLVPKPFTP-FQWAPMLSEDALNARMKSLEKLVK 440


>gi|290513116|ref|ZP_06552479.1| oxygen-independent coproporphyrinogen III oxidase [Klebsiella sp.
           1_1_55]
 gi|289774498|gb|EFD82503.1| oxygen-independent coproporphyrinogen III oxidase [Klebsiella sp.
           1_1_55]
          Length = 457

 Score = 56.9 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 40/255 (15%), Positives = 87/255 (34%), Gaps = 34/255 (13%)

Query: 173 KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS-------LSQVVDEARKLIDNGVCEI 225
           +R ++ ++ I   C K C FC        +  ++         +++  A       V ++
Sbjct: 50  QRPLSLYVHIPF-CHKLCYFCGCNKIVTRQQHKADQYLDVLEQEIIHRAPLFASRQVKQL 108

Query: 226 TLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLD 285
              G                        +S +  L+R  +  S   ++S  +     +LD
Sbjct: 109 HWGGGTPTY--------------LNKAQISRLMDLLRSHFHFSAEAEISIEVDPREIELD 154

Query: 286 VL-------MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS-DFIV 337
           VL          L + VQ  +  + + +NR         ++   R +      ++ D I 
Sbjct: 155 VLDHLRTEGFNRLSMGVQDFNKEVQRLVNREQDEAFIFDLLHHAREI--GFTSTNIDLIY 212

Query: 338 GFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQK 396
           G P +T + F  T+  V ++   +   F Y+       +   ++  D     ++L  LQ+
Sbjct: 213 GLPKQTPESFAFTLQKVAELNPDRLSVFNYAHLPTLFAAQRKIKDADLPSAEQKLEILQE 272

Query: 397 KLREQQVSFNDACVG 411
            +     +     +G
Sbjct: 273 TIGSLTAAGYQ-FIG 286


>gi|225619006|ref|YP_002720232.1| biotin synthase [Brachyspira hyodysenteriae WA1]
 gi|225213825|gb|ACN82559.1| biotin synthase [Brachyspira hyodysenteriae WA1]
          Length = 373

 Score = 56.9 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 29/245 (11%), Positives = 74/245 (30%), Gaps = 25/245 (10%)

Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
           +++    ++V   +     + +     D  + +   +   +     C   C +C +  + 
Sbjct: 40  IKKLNEEEKVEVKNLKEYLRLKAREKADKVFGKYVFMRGLIEFTNYCKNDCIYCGIRKSN 99

Query: 200 GI-EISR-SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257
              E  R     ++       + G     L G       G+         SD++ ++   
Sbjct: 100 KNAERYRLDKEDILSCCELGYEIGFRTFVLQG-------GEDPYYNLEIMSDIVEAIKTK 152

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY-----LHLPVQSGSDRILKSMNRRHTA 312
                L  +     +     +K  G    L+ +     +H      +D  L         
Sbjct: 153 YPDCALTLSIGEKEEEYYKALKEKGANRFLLRHETSDDIHYSKLHPTDMSL--------- 203

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
              ++ +  ++ +       +  +VG P +T ++       + +I         + P   
Sbjct: 204 ENRKECLRTLKKL--GYQTGTGIMVGSPHQTLENIADDFVFMQEIKPEMIGIGPFLPHKD 261

Query: 373 TPGSN 377
           TP +N
Sbjct: 262 TPFAN 266


>gi|121601839|ref|YP_988853.1| lipoyl synthase [Bartonella bacilliformis KC583]
 gi|166226345|sp|A1USA0|LIPA_BARBK RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|120614016|gb|ABM44617.1| lipoic acid synthetase [Bartonella bacilliformis KC583]
          Length = 317

 Score = 56.9 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 33/194 (17%), Positives = 71/194 (36%), Gaps = 11/194 (5%)

Query: 174 RGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVN 233
           +   +F+ + E C + C FC V    GI ++    +    A  +   G+  + +   +  
Sbjct: 73  QRHASFMILGEICTRACAFCNV--ATGIPLAVDDDEPERVADAVAQMGLKHVVITSVD-- 128

Query: 234 AWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHL 293
             R    DG    F+ ++Y++        +   T   R     L         +  +   
Sbjct: 129 --RDDLADGGAQHFAKVIYAIRRKSLGTTIEVLTPDFRHKDHALEIVVAAKPDVFNH--- 183

Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
            +++   + LK +      +   +++ R++ + P I   S  +VGF GE  ++    MD 
Sbjct: 184 NLETVPSKYLK-VRPGARYFHSIRLLQRVKEIDPMIFTKSGIMVGF-GEERNEILQLMDD 241

Query: 354 VDKIGYAQAFSFKY 367
           +           +Y
Sbjct: 242 LRSADVDFMTIGQY 255


>gi|311748693|ref|ZP_07722478.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Algoriphagus sp. PR1]
 gi|311302818|gb|EAZ81474.2| putative oxygen-independent coproporphyrinogen III oxidase
           [Algoriphagus sp. PR1]
          Length = 373

 Score = 56.9 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 44/231 (19%), Positives = 84/231 (36%), Gaps = 33/231 (14%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C +C   ++  +   +++  +VD  ++ +     +  L       + G G      
Sbjct: 11  CKQACHYCDFHFSTNL---KTMEDIVDMIKRELLL-RKDYLLSSPVETIYFGGGTPS--- 63

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY------------LHL 293
                   +  I  L++  Y+           +    + D L P             L L
Sbjct: 64  --LLQPKMIESILELIQNEYSC------EWKELTLEANPDDLNPSSLASWKSLGIDRLSL 115

Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
            +QS +  +LK  NR HT+ E  Q ID+ R +  +   S D I GFP +    +   +  
Sbjct: 116 GIQSFNSDVLKFYNRAHTSEESIQAIDKARKMGFE-KFSLDLIYGFPYKDHSIWEQDLSR 174

Query: 354 VDKIGYAQAFSFKYSPRLGTPGSNMLEQ-----VDENVKAERLLCLQKKLR 399
             +I      S+  +    T   N  ++      DE+  A++   LQ ++ 
Sbjct: 175 AIQIDPGHISSYALTIEPKTALGNWEKKGKFSPADEDFIADQFEMLQSRME 225


>gi|307207930|gb|EFN85489.1| Lipoyl synthase, mitochondrial [Harpegnathos saltator]
          Length = 368

 Score = 56.9 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 30/186 (16%), Positives = 63/186 (33%), Gaps = 16/186 (8%)

Query: 186 CDKFCTFCVVPYTRGIEISRSL---SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG 242
           C + C FC V   R            + V+ A  + D G+  I L   +    R    DG
Sbjct: 131 CTRGCRFCSVKTARTP----PPLDTEEPVNTASAIADWGLDYIVLTSVD----RDDLKDG 182

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
                +  +  + +   ++ +       +   DC+         +  +    V+  +  +
Sbjct: 183 GASHIAATVREIKKRSNIL-VECLVPDFKGDEDCVATIVSSNLDVFAHNIETVEHLTPFV 241

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
            +    R+       ++   + + P +   S  ++G  GETD +   TM  +  +G    
Sbjct: 242 -RDRRARYRQS--LAVLKAAKKINPSLITKSSIMLGL-GETDKEIEQTMQDLKNVGVDAL 297

Query: 363 FSFKYS 368
              +Y 
Sbjct: 298 TLGQYM 303


>gi|319761727|ref|YP_004125664.1| oxygen-independent coproporphyrinogen iii oxidase [Alicycliphilus
           denitrificans BC]
 gi|317116288|gb|ADU98776.1| oxygen-independent coproporphyrinogen III oxidase [Alicycliphilus
           denitrificans BC]
          Length = 411

 Score = 56.9 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 34/226 (15%), Positives = 78/226 (34%), Gaps = 16/226 (7%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C +C     +    S +L +    A  + D       + G+ V++    G  G   
Sbjct: 44  CLRKCPYCDFNSHQAPGGSEALPEARYTAALVADLEAALPLVWGRTVHSIFIGG--GTPS 101

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY-------LHLPVQSG 298
            FS    ++  + G +R R       +++        + +    Y       L + VQS 
Sbjct: 102 LFS--PEAMDRLLGDIRARLPLDAGCEVTLEANPGTFEKERFRAYRGAGVTRLSIGVQSF 159

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           +DR L+++ R H   +    ++           + D +   PG+T  +    M     + 
Sbjct: 160 NDRHLQALGRVHDRAQALAAVEEAAQAFE--TFNLDIMYALPGQTPAEQEQDMRQALALA 217

Query: 359 YAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVS 404
                 +  +    T  +    ++ E+   ++   +  ++ E   +
Sbjct: 218 PPHISIYHLTIEPNTYFAKYPPRLPED---DQAYAMLDRITELTAA 260


>gi|284051597|ref|ZP_06381807.1| radical SAM domain-containing protein [Arthrospira platensis str.
           Paraca]
          Length = 481

 Score = 56.9 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 54/325 (16%), Positives = 104/325 (32%), Gaps = 34/325 (10%)

Query: 58  SMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEI 117
             + A+L++L+   +++        FL +I+  K           V V G    A   E 
Sbjct: 19  EWEWAELVILSAMIVQKN------DFLAQIQEAKKRGKM------VAVGGPFPTALPHEA 66

Query: 118 LRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFE--RLSIVDGGYNRKRG 175
            +     + +V  +    LP  +     G+       +  +K +     I       K+ 
Sbjct: 67  EKM--GADFLVLDEGEITLPMFVAALERGETQGILRAANGEKPDVTNTPIPRFDLLEKQA 124

Query: 176 VTAF-LTIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVCEITLLGQNVN 233
                L    GC   C FC +    G +  +++  Q+V E  +L++ G  +   L  +  
Sbjct: 125 YDMMALQFSRGCPFQCEFCDIIVLYGRKPRTKAPEQLVAELDRLLELGFTQTIFLVDD-- 182

Query: 234 AWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM----SDCLIKAHGDLDVLMP 289
                   G K     LL  L E        +       +       L+    + +    
Sbjct: 183 -----NFIGNKRNVKLLLPVLKEWMEKNNYPFRMMTEASVDLAQDQELMNMMVEANFYA- 236

Query: 290 YLHLPVQSGSDRILKSMNRR-HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFR 348
            + L +++  +  L    +  +T       +D I   R  + + + FI+GF GE      
Sbjct: 237 -VFLGIETPDEASLALTKKFQNTRNSLVDAVDNIT--RSGLRVMAGFIIGFDGEKSGAGD 293

Query: 349 ATMDLVDKIGYAQAFSFKYSPRLGT 373
             +  V+      A          T
Sbjct: 294 RIIQFVETTAIPVAMFSMLQVLPNT 318


>gi|258620899|ref|ZP_05715933.1| conserved hypothetical protein [Vibrio mimicus VM573]
 gi|258586287|gb|EEW11002.1| conserved hypothetical protein [Vibrio mimicus VM573]
          Length = 312

 Score = 56.9 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 45/218 (20%), Positives = 78/218 (35%), Gaps = 20/218 (9%)

Query: 181 TIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
           TI  G    CTFC V      E   +S+   + +    I      +       + +    
Sbjct: 39  TIGRG---GCTFCNVASFANEETQQQSIHDQLKDRAGEIKRAKKYLAYFQAYTSTYAEVQ 95

Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
           +     +  +    +++I GL         P  + + L         +  +L L +Q+  
Sbjct: 96  V---LKSMYEQALEVADIVGLCVGTRPDCVPDAVLELLADYVQQGYEI--WLELGLQTAH 150

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
           D  LK +NR H    Y +I  + R++   I + +  IVG PGE   +  +T+  V K+G 
Sbjct: 151 DHTLKRINRGHDFACYAEITAKARAL--GIKVCTHLIVGLPGEGRSENMSTLQQVLKVGT 208

Query: 360 AQAFSFKYSPRLG-TPGSNMLEQVDENVKAERLLCLQK 396
                       G T             +A RL  L++
Sbjct: 209 DGIKLHGLHIVEGSTMAKAW--------RAGRLAVLEQ 238


>gi|302531872|ref|ZP_07284214.1| predicted protein [Streptomyces sp. AA4]
 gi|302440767|gb|EFL12583.1| predicted protein [Streptomyces sp. AA4]
          Length = 554

 Score = 56.9 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 49/239 (20%), Positives = 80/239 (33%), Gaps = 24/239 (10%)

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG-IEISRS 206
           R+V+          R   VD     + G    +  + GC   CT CV P  +G     R 
Sbjct: 178 RLVNLVTPYRRYSGREDKVDNLAYYRLGGLGNILTKNGCTYACTHCVEPDAKGSRFALRP 237

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK--GLVRLR 264
              VVDE   L++ GV ++       N      +   K    +++          L RLR
Sbjct: 238 PGAVVDEMHSLLEQGVHDLHTTDSEFNLN----IAHSKRVLREIIRRKRADPSSPLHRLR 293

Query: 265 -YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK------SMNRRHTAYEYRQ 317
            +    P            +       +++        +L         +R +   +  +
Sbjct: 294 LWVYVQPAPFDREYAALLAEAG--CAGINVAPDHMRPDLLDGWKVTGKGHRFYDVGDVAE 351

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGET----DDDFRATMDL-VDKIGYA-QAFSFKYSPR 370
           +    R    DI    + ++G PGET     D  R+T+ L    +GY      F YSP 
Sbjct: 352 VCSWAREY--DIPTMVEVLLGMPGETASTLRDCVRSTLALNATVVGYTLGIRVFPYSPL 408


>gi|148642847|ref|YP_001273360.1| Fe-S oxidoreductase [Methanobrevibacter smithii ATCC 35061]
 gi|148551864|gb|ABQ86992.1| Fe-S oxidoreductase [Methanobrevibacter smithii ATCC 35061]
          Length = 514

 Score = 56.9 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 55/335 (16%), Positives = 109/335 (32%), Gaps = 58/335 (17%)

Query: 77  AEKVYSFLGRIRN----LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT 132
            E  ++ L  I+     LK     E   L++    C A A     +  S  ++V V  + 
Sbjct: 81  EEDYFNVLEMIKQSGIPLKRKDRSENDPLIIAGGPC-ATANP---MPLSDYIDVFVIGEG 136

Query: 133 YYRLPELLERARFGK--------------------RVVDTDYSVEDKFERLSIVD----G 168
            + + + L+R    K                    ++   D           I+      
Sbjct: 137 EFTINKFLDRYLENKNLDNFLDMDGIYIPEFNNNAKIALIDDMKNAYHITQPIITKTDKE 196

Query: 169 GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITL 227
            Y      +  L +  GC + C FC+  Y        ++ ++V+ A K  +N  + +ITL
Sbjct: 197 DYKTVFSDSIMLNVSRGCTRGCRFCMSSYLYRPLRETTIKELVNIALKTRENTNLNKITL 256

Query: 228 LGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL 287
           +G  V  +              L  +L       ++   +     +S   ++        
Sbjct: 257 IGAAVGDYY---------DLEGLTKALESEG--FQIATPSLRIDSLSRETLETLKKSG-- 303

Query: 288 MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP-DIAISSDFIVGFPGETDDD 346
           +  + +  +S S    +            +I   I++    D  I   F++G P E+ +D
Sbjct: 304 LKSITIAPESISTLRERINKS----ISDEKIFSVIKNAVDLDFNIKLYFLIGIPYESKED 359

Query: 347 FRATMDLVDKI-------GYAQAFSFKYSPRLGTP 374
                + ++KI        Y +       P+  TP
Sbjct: 360 IEELANYIEKIANMHKNRNYIKFSINPVIPKPQTP 394


>gi|15805791|ref|NP_294489.1| lipoyl synthase [Deinococcus radiodurans R1]
 gi|8134545|sp|Q9RWA4|LIPA_DEIRA RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|6458473|gb|AAF10341.1|AE001931_12 lipoic acid synthase [Deinococcus radiodurans R1]
          Length = 331

 Score = 56.9 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 38/228 (16%), Positives = 74/228 (32%), Gaps = 13/228 (5%)

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR-- 199
           +     R +  ++ +    E     + G    RG   F+ +   C + C FC V      
Sbjct: 42  QVFTEVRKIVKEHRLHTVCEEAMCPNIGECWSRGTATFMLMGHICTRACRFCAVDTGNPM 101

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G         V D  R +    +  + L   +    R    DG    F+  + ++ E+  
Sbjct: 102 GKLDLDEPRSVADSVRLM---DLKYVVLTSVD----RDDLPDGGAYHFAKTVKAIKEVNP 154

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
             R+   T      + C +    D  V     +L         ++ +   +       ++
Sbjct: 155 QTRVEALTPDFGGNTAC-VDLVLDSGVDTYAQNLETVRRLTHPVRDIRASYDR--TLSVL 211

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
              +  RPD+   +  ++G  GET ++ R  M      G       +Y
Sbjct: 212 AHAKQARPDVITKTSLMLGL-GETREEIREAMADCRAAGVDVLTFGQY 258


>gi|153826294|ref|ZP_01978961.1| oxygen-independent coproporphyrinogen III oxidase [Vibrio cholerae
           MZO-2]
 gi|149739962|gb|EDM54141.1| oxygen-independent coproporphyrinogen III oxidase [Vibrio cholerae
           MZO-2]
          Length = 480

 Score = 56.9 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 53/298 (17%), Positives = 105/298 (35%), Gaps = 24/298 (8%)

Query: 127 VVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVD----GGYNRKRGVTAFLTI 182
           VV  Q       +L++  +      +  +  +  E  +I D         +R ++ ++ I
Sbjct: 23  VVPSQQILWDQAILDKYNYSGPRYTSYPTAVEFHEAFTIADFDMACTQYPERPLSLYIHI 82

Query: 183 QEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG 242
              C K C +C          S    + +D     I        L+G+NV         G
Sbjct: 83  PF-CHKLCYYCGCNKVITRH-SHKADEYLDVLEHEIRQ--RASLLIGRNVTQLH---FGG 135

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL-------MPYLHLPV 295
              TF      +S +  L+R  +  +   ++S  +      L+VL          + + V
Sbjct: 136 GTPTF-LTNAQISRLMTLLRSEFHFADEAEISIEIDPREIQLEVLDHLRQEGFNRVSIGV 194

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS-DFIVGFPGETDDDFRATMDLV 354
           Q  +  + K +NR         +++R + +      ++ D I G P +T   F  T+  V
Sbjct: 195 QDFNKEVQKLVNREQDEQFIFDLVERAKQL--GFRSTNLDLIYGLPKQTAATFAQTLQQV 252

Query: 355 DKIGYAQAFSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVG 411
             +   +   F Y+       +   ++Q D     E+L  LQ+ +     +     +G
Sbjct: 253 LTMQPGRLSVFNYAHMPQLFAAQRKIKQADLPAAEEKLAILQQTITTLTGAGYQ-FIG 309


>gi|159904178|ref|YP_001551522.1| lipoyl synthase [Prochlorococcus marinus str. MIT 9211]
 gi|159889354|gb|ABX09568.1| lipoic acid synthetase [Prochlorococcus marinus str. MIT 9211]
          Length = 294

 Score = 56.9 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 70/220 (31%), Gaps = 11/220 (5%)

Query: 153 DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVD 212
           D  +    +  S  + G     G   FL +  GC + C +C + + +  E     ++   
Sbjct: 31  DLKLNTVCQEASCPNIGECFAGGTATFLIMGPGCTRACPYCDIAFDKS-ERGLDPTEPHR 89

Query: 213 EARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
               +   G+  + +   N    R    DG    F   + S+        +         
Sbjct: 90  LGEAVSRLGLNHVVITSVN----RDDLKDGGASQFVACIESVRARSPETTIELLIPDLCG 145

Query: 273 MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAIS 332
             + L         ++ +    V     R+ K    +       +++ R+R   P +   
Sbjct: 146 DWNALNVVMKAKPNVLNHNIETV----PRLYKKARPQGQYERSLELLRRVRDGWPKVYTK 201

Query: 333 SDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY-SPRL 371
           S  +VG  GETD++    +  +           +Y SP  
Sbjct: 202 SGLMVGL-GETDEEVMNVLSDLRSNQVDIVTIGQYLSPGP 240


>gi|315145614|gb|EFT89630.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Enterococcus faecalis TX2141]
 gi|315160301|gb|EFU04318.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Enterococcus faecalis TX0645]
 gi|315166723|gb|EFU10740.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Enterococcus faecalis TX1341]
          Length = 382

 Score = 56.9 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 50/254 (19%), Positives = 98/254 (38%), Gaps = 28/254 (11%)

Query: 177 TAFLTIQEGCDKFCTFCVV--PYTRGIEISRSLSQVVDEARKLI----DNGVCEITLLGQ 230
           +A++ I   C+  C +C     +  G  +   +  ++ E R       +  +  I + G 
Sbjct: 5   SAYIHIPF-CEHICYYCDFNKVFLEGQPVDEYIQSLLKEIRLTQALYPEQEMKTIYIGGG 63

Query: 231 NVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT-SHPRDMSDCLIKAHGDLDVLMP 289
              +   K LD        +   L       R  +T  ++P D++   ++   +    + 
Sbjct: 64  TPTSLSAKQLD---VLLKGVREQL---TFDDRNEFTVEANPGDLTQEKLQVMKNYG--VN 115

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI-RSVRPDIAISSDFIVGFPGETDDDFR 348
            L + VQ+  DR+LK + R+HTA +  + +  + +    +++I  D I   PG+T + FR
Sbjct: 116 RLSMGVQTFDDRLLKKIGRKHTAADVYETMKFLEKENFTNVSI--DLIYALPGQTLESFR 173

Query: 349 ATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE----QVDENVKA-----ERLLCLQKKLR 399
            T+     +       +       T   N +     Q+ E         E +  ++KK R
Sbjct: 174 DTLTRALALDLPHYSLYSLILENKTMFMNWVRQGRLQLPEEEIEAQMFDETIEAMEKKGR 233

Query: 400 EQQVSFNDACVGQI 413
            Q    N A  G+ 
Sbjct: 234 HQYEVSNFALTGKE 247


>gi|308186014|ref|YP_003930145.1| lipoic acid synthetase [Pantoea vagans C9-1]
 gi|308056524|gb|ADO08696.1| lipoic acid synthetase [Pantoea vagans C9-1]
          Length = 321

 Score = 56.9 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 31/183 (16%), Positives = 66/183 (36%), Gaps = 12/183 (6%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V    G   +   ++    A+ + D G+  + +   +    R    DG   
Sbjct: 94  CTRRCPFCDV--AHGRPNAPDANEPAKLAQTIADMGLRYVVITSVD----RDDLRDGGAQ 147

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAH-GDLDVLMPYLHLPVQSGSDRILK 304
            F+D + ++ E    +++       R   D  ++        +  +    V     R+ +
Sbjct: 148 HFADCISAIREKNPTIKIETLVPDFRGRMDRALEILTATPPDVFNHNLENV----PRVYR 203

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
            +          ++++R +   P I   S  +VG  GET+ +    M  + + G      
Sbjct: 204 QVRPGANYEWSLKLLERFKEAHPHIPTKSGLMVGL-GETNAEIVEVMRDLRRHGVTMLTL 262

Query: 365 FKY 367
            +Y
Sbjct: 263 GQY 265


>gi|291569311|dbj|BAI91583.1| radical SAM domain protein [Arthrospira platensis NIES-39]
          Length = 888

 Score = 56.9 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 53/323 (16%), Positives = 100/323 (30%), Gaps = 30/323 (9%)

Query: 110 AQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGG 169
           A    E++L     V  V  PQ Y    +                 V       SI    
Sbjct: 193 AGLTREQLLLDLAQVPGVYVPQFYDMAADGSIHPNHPDVPATIIRRVATPMPAYSITMVP 252

Query: 170 YNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVD-EARKLIDNGVCEITLL 228
           +         + ++ GC + C FC                VV+  A+ +   G  E +LL
Sbjct: 253 FVETVHDRLAIEVRRGCTRGCRFCQPGMLTRPARDVEPEAVVEAIAKGMKATGYNEFSLL 312

Query: 229 GQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLM 288
                               ++   L      + L   +       + +    G      
Sbjct: 313 S-----LSCSDYLSLPAVGMEIKNRLR--DSNISLSLPSQRVDRFDENIANIIGGTRT-- 363

Query: 289 PYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDD-- 346
             L    ++G+ R+   +N+  T  E  + +        D  I   F++G PGETD D  
Sbjct: 364 SSLTFAPEAGTQRMRDVINKGLTNEELLRGVQTAYEQGWD-KIKLYFMIGLPGETDADVL 422

Query: 347 -FRATMDLVDKIGYAQAF--------SFKYSPRLGTP------GSNMLEQVDENVKAE-- 389
               T+  + +                  ++P+  TP       +   ++  + +KAE  
Sbjct: 423 GIAETVRWLQRQCQGHRRRPLSINLTISNFTPKPHTPFQWHSVSTTEFQRKQQLLKAEFH 482

Query: 390 RLLCLQKKLREQQVSFNDACVGQ 412
           RL  ++    + ++S  +  +G+
Sbjct: 483 RLKGVKANFTDVRISAMEDFIGR 505


>gi|225374511|ref|ZP_03751732.1| hypothetical protein ROSEINA2194_00126 [Roseburia inulinivorans DSM
           16841]
 gi|225213749|gb|EEG96103.1| hypothetical protein ROSEINA2194_00126 [Roseburia inulinivorans DSM
           16841]
          Length = 312

 Score = 56.9 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 30/211 (14%), Positives = 74/211 (35%), Gaps = 21/211 (9%)

Query: 183 QEGCDKFCT------FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR 236
             GC  FC+      F   P       S S+++ + +A++ I         +        
Sbjct: 49  SRGCI-FCSAGGSGDFATAP-------SLSVTEQITQAKERIRRKSNCKKFIA--YFQAY 98

Query: 237 GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMP-YLHLPV 295
                           ++++    +      +    +   ++    +L+   P ++ L +
Sbjct: 99  TNTYAPVSYLRELFTEAIAQ--PDIAALSIATRCDCLPPEVLDLLSELNCQKPVWIELGL 156

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
           QS  +  L+ +    T  +Y   +D ++     +++ +  I+G PGET++   A++D V 
Sbjct: 157 QSIHNDTLRQIRSGFTYEQYLSAVDALKDR--GLSVITHLILGLPGETEEMMLASVDAVA 214

Query: 356 KIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
            +               T  + + ++    V
Sbjct: 215 HLPVDGVKLQLLHVLKNTDLALLYKKAPFPV 245


>gi|73749317|ref|YP_308556.1| radical SAM/B12 binding domain-containing protein [Dehalococcoides
           sp. CBDB1]
 gi|289433278|ref|YP_003463151.1| radical SAM protein [Dehalococcoides sp. GT]
 gi|73661033|emb|CAI83640.1| radical SAM/B12 binding domain protein [Dehalococcoides sp. CBDB1]
 gi|288946998|gb|ADC74695.1| Radical SAM domain protein [Dehalococcoides sp. GT]
          Length = 710

 Score = 56.9 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 41/208 (19%), Positives = 76/208 (36%), Gaps = 27/208 (12%)

Query: 183 QEGCDKF-CTFCVVPYTRG-IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL 240
             GC    C FC      G     R  +++ ++ R               +V     K  
Sbjct: 320 SRGCYWGKCAFCSHNEAYGWHYQKREAAKIAEDMR-------------SLSVRHKVDKFA 366

Query: 241 DGEKCTFSDLLYSLSE--IKGLVRLRYTTSHPRD--MSDCLIKAHGDLDVLMPYLHLPVQ 296
             ++     L  +LS+  IKG +++  + +   +   +  L             L L ++
Sbjct: 367 FADEGLAPSLADALSDELIKGGIQVSCSVNVRLESRFTPELCLKMRKAG--FRVLFLGLE 424

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
           SG +R+L+ M +  T     Q+   I   R DI       +GFP E++ +   T+D +  
Sbjct: 425 SGCNRVLEHMEKGTTREIAVQVCRNI--YRADIWNHLYVFLGFPTESEAEAGETIDFLAD 482

Query: 357 IGYAQAFSF---KYSPRLGTPGSNMLEQ 381
                  SF    +S   G+  + + E+
Sbjct: 483 NR-DIIRSFNIDYFSLGKGSAVARLPEK 509


>gi|87119255|ref|ZP_01075153.1| lipoyl synthase [Marinomonas sp. MED121]
 gi|86165646|gb|EAQ66913.1| lipoyl synthase [Marinomonas sp. MED121]
          Length = 319

 Score = 56.9 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 48/282 (17%), Positives = 91/282 (32%), Gaps = 25/282 (8%)

Query: 114 GEEILRRSPIVNVVVGPQTYYRLPELL--------ERARFGKRVVDTDYSVEDKFERLSI 165
           G E + R P+   V+  +   R P+ L        E AR  K + D  + +    E  + 
Sbjct: 16  GAEKMARIPV--KVIPTEEIPRKPDWLRVRMPASPEIARIKKTLRD--HKLASVCEEANC 71

Query: 166 VDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEI 225
            + G     G   F+ + E C + C FC V + R   +S    +  + A  + D  +  +
Sbjct: 72  PNLGECFSNGTATFMIMGEICTRRCPFCDVAHGRPNALS--PDEPKELAAAIRDMKLKYV 129

Query: 226 TLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD-MSDCLIKAHGDL 284
            +   +    R    DG    F D +    +    + +       R  M   L       
Sbjct: 130 VITSVD----RDDLKDGGAQHFIDCINETRKESPNIEIETLVPDFRGRMDKALDILELAP 185

Query: 285 DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETD 344
             +  +    +     R+ + +           ++ + +   PD+A  S  +VG  GE  
Sbjct: 186 PDVFNHNLESI----PRLYRQVRPGSDYQWSLDLLKKFKDRCPDVATKSGLMVGM-GEEF 240

Query: 345 DDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           ++    M  +           +Y  +       M   V    
Sbjct: 241 EEIVQVMKDLRAHNVDMLTIGQYL-QPSKHHFPMARFVPPEE 281


>gi|304392748|ref|ZP_07374688.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Ahrensia sp. R2A130]
 gi|303295378|gb|EFL89738.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Ahrensia sp. R2A130]
          Length = 394

 Score = 56.9 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 36/226 (15%), Positives = 77/226 (34%), Gaps = 20/226 (8%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C   C +C           R++ Q  +      +  +  +  L  N          G   
Sbjct: 23  CAAKCPYC---DFNSHVRHRTVDQ--EAFAAGFEREIAHMAALQPNRPVTSVFFGGGTPS 77

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY-------LHLPVQSG 298
                  ++  I   +   +      +++        + D    Y       + L VQS 
Sbjct: 78  LME--PATVGTILEAIHSHWRVEDGIEITLEANPTSVEADRFSGYRAAGVNRVSLGVQSL 135

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
            D  LK + R H+A E    I   R + P ++   D I   P +  DD++  ++    + 
Sbjct: 136 RDEQLKFLGRMHSADEAIAAIGIARDLFPRLSF--DMIYARPDQKLDDWKVELEQAISLA 193

Query: 359 YAQAFSFKYSPRLGTPGSNMLEQ----VDENVKAERLLCLQKKLRE 400
                 ++ +    TP  ++ ++    + ++ +A +L  L + + E
Sbjct: 194 ADHLSLYQLTIEPDTPFYDLHKKGRFAIPDHEQAAQLYELTQDITE 239


>gi|295663188|ref|XP_002792147.1| lipoyl synthase [Paracoccidioides brasiliensis Pb01]
 gi|306755836|sp|C1H594|LIPA_PARBA RecName: Full=Lipoyl synthase, mitochondrial; AltName: Full=Lipoate
           synthase; Short=LS; Short=Lip-syn; AltName: Full=Lipoic
           acid synthase; Flags: Precursor
 gi|226279322|gb|EEH34888.1| lipoyl synthase [Paracoccidioides brasiliensis Pb01]
          Length = 439

 Score = 56.9 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 39/258 (15%), Positives = 89/258 (34%), Gaps = 16/258 (6%)

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQ-EGCDKFCTFCVVPYTRG 200
           R +   R ++     E+          G + K   TA + +  + C + C FC V  +R 
Sbjct: 136 RIKSDLRGLNLHTVCEEARCPNISDCWGGSSKSAATATIMLMGDTCTRGCRFCSVKTSRT 195

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
                   +  + A  L   G+  + +   +    R    DG     ++ +  + +    
Sbjct: 196 PP-PLDPHEPENTAEALSRWGLGYVVMTSVD----RDDLADGGARHVAETVRKVKQKAPN 250

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDV-LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           + L   T         ++       + +  +    V++ +  +     RR T  +  +++
Sbjct: 251 ILLECLTGD-YAGDLEMVALVATSGLDVFAHNVETVEALTPFVRD---RRATFQQSLRVL 306

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
              +  +P++   +  ++G  GET+     T+  +  +        +Y  R       + 
Sbjct: 307 KAAKEAKPELITKTSIMLGL-GETEAQLWETLKALRAVDVDVVTFGQYM-RPTKRHMAVH 364

Query: 380 EQVDENVK---AERLLCL 394
           E V  +V     ER L +
Sbjct: 365 EYVRPDVFDSWKERALEM 382


>gi|224541314|ref|ZP_03681853.1| hypothetical protein CATMIT_00474 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525751|gb|EEF94856.1| hypothetical protein CATMIT_00474 [Catenibacterium mitsuokai DSM
           15897]
          Length = 363

 Score = 56.9 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 36/209 (17%), Positives = 74/209 (35%), Gaps = 23/209 (11%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           CD  C++C        E       V+    +L +      TL    +      G      
Sbjct: 13  CDHICSYCDFAKVYYRE-----EFVLQYLERLKEE---LDTLPHHPMETIYIGGGTPSAL 64

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL-------MPYLHLPVQSG 298
           + + L   L+ I       +      + +  +      LD L       +  L + VQ+ 
Sbjct: 65  SLNQLKMLLNMIDP-----FVGDGTLEYTIEVNPESATLDKLEIMHLHGVNRLSVGVQTF 119

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSV-RPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
            + +LK + R HT+   ++++   +++    I+I  D + G PG+T +D +  + +   +
Sbjct: 120 DNTLLKRIERYHTSSIAKEVVRNAKAIGFKHISI--DLMYGLPGQTLEDVKEDLQIALSL 177

Query: 358 GYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
                  +       T   +  E +DE  
Sbjct: 178 PINHLSYYSLILEEHTRLYDNYEPLDEET 206


>gi|257065787|ref|YP_003152043.1| Radical SAM domain-containing protein [Anaerococcus prevotii DSM
           20548]
 gi|256797667|gb|ACV28322.1| Radical SAM domain protein [Anaerococcus prevotii DSM 20548]
          Length = 347

 Score = 56.9 bits (136), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 41/254 (16%), Positives = 79/254 (31%), Gaps = 22/254 (8%)

Query: 130 PQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKF 189
             + +   E L+R    + + D      D   +    D  + R       +     C   
Sbjct: 4   KNSKHYDDETLKRWIEDESLTDELNKKADAIRKEIYGDKVFVR-----GLIEFSNVCKND 58

Query: 190 CTFCVVPYTRGI-EISR-SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTF 247
           C +C +  +    E  R S  +++  A      G     L G       G+        F
Sbjct: 59  CYYCGIRKSNDKVERYRLSEEEILACADLGYKLGYRTFVLQG-------GEDGHFTDDMF 111

Query: 248 SDLLYSLSEIKGLVRLRYTTSHPRDMSDC-LIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306
            D++  +  +   V +  +       S   L +A  D      YL     S  D   K  
Sbjct: 112 VDIVKKIKNLHDDVAITLSLGERSYESYKKLFEAGAD-----RYLLRQETSDKDHYSKLH 166

Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
               +    RQ +  ++ +     +   F+VG P +  +D    +  ++++  A      
Sbjct: 167 PETMSFESRRQALRDLKEI--GFQVGGGFMVGSPYQKTEDIIKDLRFLEELEPAMIGIGP 224

Query: 367 YSPRLGTPGSNMLE 380
           Y  +  TP  +   
Sbjct: 225 YMTQHDTPFKDFPN 238


>gi|157962973|ref|YP_001503007.1| lipoyl synthase [Shewanella pealeana ATCC 700345]
 gi|189046791|sp|A8H7D5|LIPA_SHEPA RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|157847973|gb|ABV88472.1| lipoic acid synthetase [Shewanella pealeana ATCC 700345]
          Length = 321

 Score = 56.9 bits (136), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 25/184 (13%), Positives = 57/184 (30%), Gaps = 14/184 (7%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V    G  +     +    A+ + D  +  + +   +    R    DG   
Sbjct: 94  CTRRCPFCDV--AHGRPLKPDAEEPKKLAQTIKDMKLKYVVITSVD----RDDLRDGGAQ 147

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLD--VLMPYLHLPVQSGSDRIL 303
            F+D +  +  +   +++       R   D  ++        V    L            
Sbjct: 148 HFADCIREIRLLNPEIKIETLVPDFRGRIDAALEILATEPPDVFNHNLETAPMHY----- 202

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           +             ++ + +   P+I   S  ++G  GET+++    +  +         
Sbjct: 203 RKARPGANYQWSLDLLKKFKERHPNIPTKSGLMMGL-GETNEEIAQVLHDLRAHNVEMLT 261

Query: 364 SFKY 367
             +Y
Sbjct: 262 LGQY 265


>gi|121997894|ref|YP_001002681.1| radical SAM domain-containing protein [Halorhodospira halophila
           SL1]
 gi|121589299|gb|ABM61879.1| Radical SAM N-terminal domain protein [Halorhodospira halophila
           SL1]
          Length = 673

 Score = 56.9 bits (136), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 41/252 (16%), Positives = 80/252 (31%), Gaps = 38/252 (15%)

Query: 166 VDGGYNRKRGVTAF------LTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLI 218
                   R + A+      + I  GC   C+FC +    G  I SRS   V+ E  ++ 
Sbjct: 308 APHPAYAGRPIPAWEMIRFSVNIMRGCFGGCSFCSITEHEGRLIQSRSQESVLREIDEIA 367

Query: 219 D--NGVCEIT--LLGQNVNAWR----------------------GKGLDGEKCTFSDLLY 252
           +   G   +   L G + N +R                       + LD +     +L  
Sbjct: 368 ERTEGFTGVISDLGGPSANMYRMGCKDPKAEAHCRRMSCLYPRVCRNLDTDHEPLINLYR 427

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRRH 310
              +   + ++   +    D++        +L    +  YL +  +      L  M +  
Sbjct: 428 QARQRPAVKKVLVASGVRYDLAIHSKAYVRELVSHHVGGYLKIAPEHTEPGPLAQMLKPG 487

Query: 311 --TAYEYRQIIDRI-RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
             T   ++ + +   R    +  +   FI   PG TD+D       + + G+       +
Sbjct: 488 MDTYERFKALFEDYSRRAGKEQYLIPYFIAAHPGTTDEDMLELALWLKRNGFRPNQVQAF 547

Query: 368 SPRLGTPGSNML 379
            P      + M 
Sbjct: 548 LPTPMALATAMY 559


>gi|321225847|gb|EFX50901.1| putative Fe-S oxidoreductase family 2 [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
          Length = 692

 Score = 56.9 bits (136), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 52/297 (17%), Positives = 100/297 (33%), Gaps = 58/297 (19%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDN--GVCEIT--LLGQNVNA 234
           + I  GC   C+FC +    G  I SRS   +++E   + D   G   +   L G   N 
Sbjct: 349 INIMRGCFGGCSFCSITEHEGRIIQSRSEDSIINEIEAIRDTVPGFTGVISDLGGPTANM 408

Query: 235 WR----------------------GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
           +                          +D +     +L     E+KG+ ++   +    D
Sbjct: 409 YMLRCKSPRAEQTCRRLSCVYPDICPHMDTDHTPTINLYRRARELKGIKKILIASGVRYD 468

Query: 273 MSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRRH--TAYEYRQIIDRI-RSVRP 327
           ++    +   +L    +  YL +  +   +  L  M +    +   ++++ D   +    
Sbjct: 469 IAVEDPRYIKELASHHVGGYLKIAPEHTEEGPLSKMMKPGMGSYDRFKELFDLYSKQAGK 528

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGY--AQAFSFKYSPR-----LGTPGSNMLE 380
           +  +   FI   PG  D+D       + +  +   Q  +F  SP      +   G N L 
Sbjct: 529 EQYLIPYFISAHPGTRDEDMVNLALWLKRHRFRLDQVQNFYPSPLANSTTMYYTGKNPLG 588

Query: 381 QV---DENV---KAERLLCLQKKL-------------REQQVSFNDACVGQIIEVLI 418
           ++    E+V   K +R   L K L             +  +       +G   E L+
Sbjct: 589 KIGYKSEDVVVPKGDRQRRLHKALLRYHDPANWPLIRQALEAMGKKHLIGGRRECLV 645


>gi|294784572|ref|ZP_06749861.1| oxygen-independent coproporphyrinogen III oxidase [Fusobacterium
           sp. 3_1_27]
 gi|294487788|gb|EFG35147.1| oxygen-independent coproporphyrinogen III oxidase [Fusobacterium
           sp. 3_1_27]
          Length = 348

 Score = 56.9 bits (136), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 34/213 (15%), Positives = 68/213 (31%), Gaps = 14/213 (6%)

Query: 174 RGVTAFLTIQE-GCDKFCTFCVVPYTRGIEISRSLSQVVDEA----RKLIDNGVCEITLL 228
           +     + I   GC   C FC      G E   SL  + +      + L  N + ++   
Sbjct: 2   KHYNIPVFISHFGCPNACVFCNQKKINGRETDVSLDDLKNIIDSYLKTLPKNSIKQVAFF 61

Query: 229 GQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLM 288
           G       G  ++ +K     +   +           T     D    ++         +
Sbjct: 62  GGTFT---GISMNLQKEYLEVVKKYIDNNDVEGVRISTRPECIDD--EILTQLKKYG--V 114

Query: 289 PYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFR 348
             + L +QS  D++LK+  R +T    ++  D I+S      +    ++G P        
Sbjct: 115 KTIELGIQSLDDKVLKATGRNYTYNIVKKSCDLIKSY--GFELGVQLMIGLPKSDYKSDL 172

Query: 349 ATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
            +     ++    A  +      GT    M ++
Sbjct: 173 QSAIKSLELNPDIARIYPTLVIKGTELEFMYKK 205


>gi|51244568|ref|YP_064452.1| oxygen-independent coproporphyrinogen III oxidase [Desulfotalea
           psychrophila LSv54]
 gi|50875605|emb|CAG35445.1| related to oxygen-independent coproporphyrinogen III oxidase
           [Desulfotalea psychrophila LSv54]
          Length = 387

 Score = 56.9 bits (136), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 37/204 (18%), Positives = 60/204 (29%), Gaps = 19/204 (9%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C   C +C      G        Q     R +         L  +           G   
Sbjct: 23  CRSKCRYCAFNSYSG--------QGHLFVRYIAALKRELSFLFSEYGGRPLDTVFFGGGT 74

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCL-------IKAHGDLDVLMPYLHLPVQSG 298
                   L EI    +  +  S   ++S                       +   VQS 
Sbjct: 75  PTVLGAAGLVEILDHCQQLWGWSKQAEISTEANPETVSAADLILLRRGGFNRISFGVQSL 134

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           SD  L S+ R H+A    Q ++  R    D  I+ D + G  G++  D+R  +     + 
Sbjct: 135 SDHDLLSLGRAHSAARAIQALEDARQAGFD-NINLDLMSGLHGQSLQDWRRVLTEALTLK 193

Query: 359 YAQAFSFKYSPRLGTPGSNMLEQV 382
                 ++ +P  GTP     + V
Sbjct: 194 PDHLSVYQLTPEEGTP---YYDDV 214


>gi|325263969|ref|ZP_08130702.1| radical SAM domain protein [Clostridium sp. D5]
 gi|324031007|gb|EGB92289.1| radical SAM domain protein [Clostridium sp. D5]
          Length = 621

 Score = 56.9 bits (136), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 46/292 (15%), Positives = 92/292 (31%), Gaps = 36/292 (12%)

Query: 160 FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLID 219
           +    +V      +  V   L IQ GC + C FC           R +  + + AR ++ 
Sbjct: 245 YPMKPVVPFIKATQDRVV--LEIQRGCIRGCRFCQAGMLYRPTRERDVETLKEYARVMLK 302

Query: 220 NGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI--KGLVRLRYTTSHPRDMSDCL 277
           N          +           +     +L+  L E      + +   +      S  +
Sbjct: 303 NTG--------HEEISLSSLSSSDYSELKELVNFLIEEFKDKSINISLPSLRIDAFSLDV 354

Query: 278 IKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIV 337
           ++   D+      L    ++GS R+   +N+  T     +   +         +   F++
Sbjct: 355 MQQVQDIRK--SSLTFAPEAGSQRMRNVINKGLTEEMILEGAGQAFEGGWS-KVKLYFML 411

Query: 338 GFPGETDDDFRATMDLVD-------KIGYAQAF--------SFKYSPRLGTPGSNMLEQV 382
           G P ET++D +    L D       +I   +          +  + P+  TP        
Sbjct: 412 GLPTETEEDMKEIARLSDRIARRYYEIPKEERHGKCQITASTSFFVPKPFTPFQWSPMCT 471

Query: 383 DENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR 431
            E             Q++L  + + +N       + VL E       + VG+
Sbjct: 472 SEEYMHRASVVKHEFQEQLNRKSMKYN--WHDAEVTVL-EGVFARGDRRVGK 520


>gi|319942265|ref|ZP_08016580.1| coproporphyrinogen oxidase [Sutterella wadsworthensis 3_1_45B]
 gi|319804138|gb|EFW01038.1| coproporphyrinogen oxidase [Sutterella wadsworthensis 3_1_45B]
          Length = 401

 Score = 56.9 bits (136), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 55/134 (41%), Gaps = 14/134 (10%)

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVL-------MPYLHLPVQSGSDRILKSMNRRHTAY 313
           +R R+  +   +++        + +         +  L + VQS SD  L+ + R HTA 
Sbjct: 101 IRSRFRLTEDCEITMEANPGTAESEKFKAFRAAGVNRLSIGVQSFSDEKLRRLGRIHTAD 160

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI--GYAQAFSFKYSPRL 371
           + R  ID  R    +  +  D +   PGE+  D +  M+L + +  G      ++ +   
Sbjct: 161 DARAAIDMARRSFENFNL--DLMYALPGESIADLQ--MELAEALSSGATHLSCYQLTIEP 216

Query: 372 GTPGSN-MLEQVDE 384
           GT     + E + +
Sbjct: 217 GTAFEKRLPEDLPD 230


>gi|182419792|ref|ZP_02951032.1| radical SAM domain protein protein [Clostridium butyricum 5521]
 gi|237666845|ref|ZP_04526830.1| radical SAM N- domain protein [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|182376340|gb|EDT73922.1| radical SAM domain protein protein [Clostridium butyricum 5521]
 gi|237658044|gb|EEP55599.1| radical SAM N- domain protein [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 656

 Score = 56.9 bits (136), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 49/305 (16%), Positives = 94/305 (30%), Gaps = 48/305 (15%)

Query: 112 AEGEEILRRSPIVNVVVGPQTYYRLPE-LLERARFGKRVVDTDYSVEDKFERLSIVDGGY 170
           A GE         + ++G     +  +  L +    + +   +  +             Y
Sbjct: 229 AYGEAYKLEYYEQDSILGKTIIQKHGDRYLVQNSPQENMTQEEMDITYNLPYTRTYHPIY 288

Query: 171 NRKRGVTAFLTI------QEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEA--------- 214
             K G+ A   +        GC   C+FC + + +G  I +RS   ++DEA         
Sbjct: 289 KEKGGIPAITEVKFSITSHRGCFGSCSFCALTFHQGRVIQNRSQDSIIDEAKLLTTFPDF 348

Query: 215 ----------------RKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258
                           +      V       Q +     K L  +   +  LL  + ++ 
Sbjct: 349 KGYIHDIGGPTADFRHKACKKQEVHGTCKTKQCMFPKPCKNLIIDHTEYLSLLKKVRKLP 408

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDL--DVLMPY-----LHLPVQSGSDRILKSMNRRHT 311
           G+ ++   +    D    LI  H +     L  +     L +  +    R+L  M +  T
Sbjct: 409 GIKKVFIRSGIRYDY---LIHDHNESFFKELCEHHISGQLKVAPEHVVPRVLNQMGKP-T 464

Query: 312 AYEYRQIIDRIRSVRPDIA----ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
              Y + +D+   +   I     +    +   PG   +        V K+GY       +
Sbjct: 465 REVYDKFVDKYFQINNRIGKKQFLVPYLMSSHPGSDLNAAIELAQYVKKMGYTPEQVQDF 524

Query: 368 SPRLG 372
            P  G
Sbjct: 525 YPTPG 529


>gi|299068152|emb|CBJ39369.1| Lipoyl synthase (Lipoic acid synthase or Lipoate synthase, Sulfur
           insertion protein lipA (Lip-syn, LS) [Ralstonia
           solanacearum CMR15]
          Length = 333

 Score = 56.9 bits (136), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 34/210 (16%), Positives = 70/210 (33%), Gaps = 16/210 (7%)

Query: 161 ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS--QVVDEARKLI 218
           E  S  + G    +G   F+ + + C + C FC V + R       L   +  + A+ + 
Sbjct: 81  EEASCPNIGECFGKGTATFMIMGDKCTRRCPFCDVGHGRPD----PLDANEPENLAKTIA 136

Query: 219 DNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLI 278
              +  + +   +    R    DG    + D +    E+    R+       R   +  +
Sbjct: 137 QLRLNYVVITSVD----RDDLRDGGAQHYVDCISRTRELSPATRIEVLVPDFRGRLEKAL 192

Query: 279 KAH-GDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIV 337
                    +M +    V     R+ K            +++   ++  P++   S  +V
Sbjct: 193 DILQACPPDVMNHNMETV----PRLYKQARPGADYAHSLKLLKDFKARNPNLPTKSGLMV 248

Query: 338 GFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           G  GETD++    M  +           +Y
Sbjct: 249 GL-GETDEEILEVMRDMRAHDIDMLTIGQY 277


>gi|156935619|ref|YP_001439535.1| hypothetical protein ESA_03484 [Cronobacter sakazakii ATCC BAA-894]
 gi|156533873|gb|ABU78699.1| hypothetical protein ESA_03484 [Cronobacter sakazakii ATCC BAA-894]
          Length = 717

 Score = 56.9 bits (136), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 52/321 (16%), Positives = 103/321 (32%), Gaps = 61/321 (19%)

Query: 159 KFERLSIVDGGYNR---KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEA 214
            ++R+     G  R      +   + I  GC   C+FC +    G  I SRS   +++E 
Sbjct: 354 PYQRVPHPAYGTKRIPAYEMIRFSVNIMRGCFGGCSFCSITEHEGRIIQSRSEESIINEI 413

Query: 215 RKLIDN--GVCEIT--LLGQNVNAWR----------------------GKGLDGEKCTFS 248
             + D+  G   I   L G   N +                          +D +     
Sbjct: 414 EAIRDSVPGFTGIISDLGGPTANMYMLRCTSPRAEQTCRRLSCVYPEICPHMDTDHTPTI 473

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSM 306
           +L     ++KG+ ++   +    D++    +   +L    +  YL +  +   +  L  M
Sbjct: 474 NLYRRARDLKGIRKILIASGVRYDLAVEDPRYIKELATHHVGGYLKIAPEHTEEGPLSKM 533

Query: 307 NRRH--TAYEYRQIIDRI-RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY--AQ 361
            +    +   ++ + D   +    +  +   FI   PG  D+D       + +  +   Q
Sbjct: 534 MKPGMGSYDRFKALFDTYSKQAGKEQYLIPYFISAHPGTRDEDMVNLALWLKRHRFRLDQ 593

Query: 362 AFSFKYSPRL-------------GTPGSNMLE-QVDENVKAERL-LCLQK--------KL 398
             +F  SP               G  G    +  V    +  RL   L +         +
Sbjct: 594 VQNFYPSPLASSTTMYYTGKNPLGKIGYKSEDVVVPRGDRQRRLHKALLRYHDPANWPVI 653

Query: 399 REQQVSF-NDACVGQIIEVLI 418
           RE   +      +G   + L+
Sbjct: 654 REALEAMGKKHLIGSRRDCLV 674


>gi|91081119|ref|XP_975527.1| PREDICTED: similar to Lipoic acid synthase CG5231-PA [Tribolium
           castaneum]
 gi|270006027|gb|EFA02475.1| hypothetical protein TcasGA2_TC008166 [Tribolium castaneum]
          Length = 372

 Score = 56.9 bits (136), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 39/230 (16%), Positives = 81/230 (35%), Gaps = 16/230 (6%)

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQ---EGCDKFCTFCVVPYTRG 200
              +++ + +     +  R   +   +      TA  TI    + C + C FC V  ++ 
Sbjct: 92  ELKEQLRNLNLHTVCEEARCPNIGECWGGGEHGTATATIMLLGDTCTRGCRFCSVKTSKT 151

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
                  ++ V  A  +   G+  I L   +    R    DG    F++ +    EIK  
Sbjct: 152 PPA-PDPNEPVKTASAIASWGLDYIVLTSVD----RDDLPDGGSNHFAETVR---EIKKR 203

Query: 261 VRLRYTTSHPRDMSDCL--IKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
                      D +  L  +K   D  + +   ++         ++    ++        
Sbjct: 204 KSEILVECLVPDFAGDLNAVKTIVDSGLDVYAHNIETVEALTPFVRDRRAKYRQS--LAT 261

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
           ++ ++   PD+   S  ++G  GETDD+ R T++ +   G       +Y 
Sbjct: 262 LEAVKKFNPDMITKSSIMLGL-GETDDEVRQTLEDLKTAGVDCVTLGQYM 310


>gi|86357562|ref|YP_469454.1| lipoyl synthase [Rhizobium etli CFN 42]
 gi|123752013|sp|Q2K8V9|LIPA_RHIEC RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|86281664|gb|ABC90727.1| lipoic acid synthetase protein [Rhizobium etli CFN 42]
          Length = 323

 Score = 56.9 bits (136), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 78/220 (35%), Gaps = 11/220 (5%)

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
           R +  ++ +    E     + G    +    F+ + E C + C FC V    G   +  +
Sbjct: 49  RAIVKEHKLVTVCEEAGCPNIGECWDKKHATFMIMGEICTRACAFCNV--ATGKPNALDM 106

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
            +  + A+ + + G+  + +   +    R    DG    F  +++++        +   T
Sbjct: 107 DEPENVAKAVREMGLSHVVITSVD----RDDLEDGGAEHFEKVIWAIRSASPATTIEILT 162

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
                    L +       +  +    +++ +   L ++      +   +++ R++ + P
Sbjct: 163 PDFLKKPGALERVVAAKPDVFNH---NMETVAGNYL-TVRPGARYFHSIRLLQRVKELDP 218

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
            +   S  +VG  GE  ++    MD +           +Y
Sbjct: 219 TMFTKSGIMVGL-GEERNEVLQLMDDLRTADVDFLTIGQY 257


>gi|85860874|ref|YP_463076.1| radical SAM superfamily protein [Syntrophus aciditrophicus SB]
 gi|85723965|gb|ABC78908.1| radical SAM superfamily protein [Syntrophus aciditrophicus SB]
          Length = 335

 Score = 56.9 bits (136), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 41/204 (20%), Positives = 69/204 (33%), Gaps = 27/204 (13%)

Query: 186 CDKFCTF-----CVVPYTRGIEISR-----SLSQVVDEARKLID-----NGVCEITLLGQ 230
           C     F     C+    RG   SR      L  V ++ R+  +      G  +     Q
Sbjct: 56  CPNRDGFLGTGGCIYCDGRG---SRLRQEGPLPSVSEQIRRGREFYRNRKGAKKFIAYFQ 112

Query: 231 NVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPR-DMSDCLIKAHGDLDVLMP 289
                      G      D   +L++   +     T      D    L+K +     +  
Sbjct: 113 TFTNTYAPC--GSLKRLYD--EALAQEDVIGLSVGTRPDCVSDEVLGLLKDYARDRHV-- 166

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +L   +QS  D+ L  +NR HTA ++   +   R+V  ++ I +  I+G PGE  +D   
Sbjct: 167 WLEFGLQSIHDKTLLRINREHTAAQFLDAVA--RAVDENLLICTHIILGLPGENHEDVMQ 224

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGT 373
           T   +  +              GT
Sbjct: 225 TAATLASLPIQGIKIHLLLALEGT 248


>gi|255027474|ref|ZP_05299460.1| hypothetical protein LmonocytFSL_16003 [Listeria monocytogenes FSL
           J2-003]
 gi|284802053|ref|YP_003413918.1| hypothetical protein LM5578_1808 [Listeria monocytogenes 08-5578]
 gi|284995195|ref|YP_003416963.1| hypothetical protein LM5923_1760 [Listeria monocytogenes 08-5923]
 gi|315282618|ref|ZP_07870988.1| radical SAM protein, family [Listeria marthii FSL S4-120]
 gi|284057615|gb|ADB68556.1| hypothetical protein LM5578_1808 [Listeria monocytogenes 08-5578]
 gi|284060662|gb|ADB71601.1| hypothetical protein LM5923_1760 [Listeria monocytogenes 08-5923]
 gi|313613729|gb|EFR87503.1| radical SAM protein, family [Listeria marthii FSL S4-120]
          Length = 321

 Score = 56.9 bits (136), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 38/195 (19%), Positives = 70/195 (35%), Gaps = 19/195 (9%)

Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDE--ARKLIDNGVCEITLLG-----QNVNAWRGKGL 240
             CTFC    +     +R+L   V     R  +     +   +       N +A   +  
Sbjct: 52  GGCTFCSAAGSGDFAGNRALDLKVQFQQVRDKMQTKWKDGKCIAYFQAFTNTHAPVAE-- 109

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL-DVLMPYLHLPVQSGS 299
                   +   ++    G+V L    + P  + D +++   +L +    +L L +QS  
Sbjct: 110 ------LREKFETVLNEPGVVGLSI-ATRPDCLPDDVVEYLAELNERTYLWLELGLQSAH 162

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
           D   + +NR H    Y + + +++    +I I +  I G P ET +    T   V + G 
Sbjct: 163 DETGRLINRAHDYDCYVEGVRKLQK--HNIRICTHIINGLPKETPEMMMETTRKVVESGV 220

Query: 360 AQAFSFKYSPRLGTP 374
                       GTP
Sbjct: 221 DGIKIHLLHLLKGTP 235


>gi|227500695|ref|ZP_03930744.1| possible coproporphyrinogen dehydrogenase [Anaerococcus tetradius
           ATCC 35098]
 gi|227217282|gb|EEI82626.1| possible coproporphyrinogen dehydrogenase [Anaerococcus tetradius
           ATCC 35098]
          Length = 431

 Score = 56.9 bits (136), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 46/263 (17%), Positives = 95/263 (36%), Gaps = 24/263 (9%)

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
              K+ + +D  ++   E  S  D     ++  + ++ I   C   C +C  P   G   
Sbjct: 93  EIKKKYLLSDEKIKLLAEVKSEQDKLAFDRKAFSVYINIPF-CPTRCHYCSYPTLVGKRN 151

Query: 204 SRS--LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI-KGL 260
            +   +  ++ E + +      +   +G    ++             DL   L  I +  
Sbjct: 152 DKKAYIDSLIYEIKNIDLPRKIDAIYVGGGTPSY---------IDHEDLARLLVAINEKF 202

Query: 261 VRLRYTTSHPRDMSDCLIKA-HGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
               +T    R+ S    K        +   + L  QS ++ I++   R +    + +I 
Sbjct: 203 TYEEFTFEAGREDSLDFDKLQILKEGKVDR-ISLNPQSFNEEIVRKAGRNYDYEHFEKIY 261

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            R R +     I++DFIVG  GE  + F     ++ K+          + ++G+      
Sbjct: 262 LRARQL--GFIINTDFIVGLMGEGSELFEKNFTVLKKLKPDNITFHALAMKVGSKYFE-- 317

Query: 380 EQVDENVKAERLLCLQKKLREQQ 402
               EN +A+R   L +  R+ +
Sbjct: 318 ----ENKRAKRSDSL-EISRKIR 335


>gi|297618331|ref|YP_003703490.1| lipoic acid synthetase [Syntrophothermus lipocalidus DSM 12680]
 gi|297146168|gb|ADI02925.1| lipoic acid synthetase [Syntrophothermus lipocalidus DSM 12680]
          Length = 302

 Score = 56.9 bits (136), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 44/244 (18%), Positives = 80/244 (32%), Gaps = 29/244 (11%)

Query: 139 LLERARFGKRVVDT----DYSVEDKFERLSIVDGGYN-------RKRGVTAFLTIQEGCD 187
           LLE  R  KR  +     D S E    RL+ V              RG   F+ + + C 
Sbjct: 10  LLETVRKAKRPENVTVYKDTSNEVTAHRLNTVCEEARCPNRGDCFSRGSATFMILGDVCT 69

Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTF 247
           + C FC V     + + R   + +   R     G+  + +        R    DG    F
Sbjct: 70  RNCRFCAVKNGHPLPVDR--EEPLRIKRAAQKMGLRHVVVTSVT----RDDLADGGAEHF 123

Query: 248 SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307
           + ++  L  + G   +       +   + L         +            + + +   
Sbjct: 124 ASVIRELRTLPGAPTVEVLVPDFKGYHEALNLVLESKPEV-------FAHNVEMVPRLYR 176

Query: 308 RRHTAYEYRQIIDRI----RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
                  Y + +D +    +  RP     S F++G  GET+ +  A ++ +   G A   
Sbjct: 177 EVRPGAVYERSLDVLAAAQKESRPGTVTKSGFMLGL-GETEAEVLALLEDLRDAGVALLT 235

Query: 364 SFKY 367
             +Y
Sbjct: 236 IGQY 239


>gi|269120688|ref|YP_003308865.1| hypothetical protein Sterm_2080 [Sebaldella termitidis ATCC 33386]
 gi|268614566|gb|ACZ08934.1| conserved hypothetical protein [Sebaldella termitidis ATCC 33386]
          Length = 316

 Score = 56.9 bits (136), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 29/154 (18%), Positives = 62/154 (40%), Gaps = 12/154 (7%)

Query: 273 MSDCLIKAHGDL-DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAI 331
           +   +++  G+L      ++ L +QS +D+  + +NR H    + +  +++R    +I +
Sbjct: 134 LDKEILEYLGELNKKTFLWVELGLQSSNDKTAQLINRGHDFRTFMKAAEQLRER--NIRV 191

Query: 332 SSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERL 391
               I G PGET DD   T+  +  +               TP   + E+   +V   R 
Sbjct: 192 CVHIINGLPGETYDDMIKTVKDISVLDINAVKIHMLYILKDTPLFKLYEKEKFSVMK-RE 250

Query: 392 LCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK 425
             +Q    + ++           EV++E+   + 
Sbjct: 251 DYIQTVADQIELLP--------EEVIVERVTGDG 276


>gi|242279245|ref|YP_002991374.1| radical SAM domain protein [Desulfovibrio salexigens DSM 2638]
 gi|242122139|gb|ACS79835.1| Radical SAM domain protein [Desulfovibrio salexigens DSM 2638]
          Length = 638

 Score = 56.9 bits (136), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 40/262 (15%), Positives = 85/262 (32%), Gaps = 35/262 (13%)

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQ----EGCDKFCTFCVVPYTRGIE-ISR 205
           + D+     + RL         +      +        GC   C+FC +   +G    SR
Sbjct: 282 ELDWLYSLPYARLPHPIYKDKGRIPAADMIEFSITSHRGCGGGCSFCSIAMHQGRHIRSR 341

Query: 206 SLSQVVDEARKLIDN----------GVCEITLLGQNVNAWRGK-------------GLDG 242
           S   +++E +++ ++          G     +   N    RGK                 
Sbjct: 342 SRKSIMNELKRMQEHPDFRGSVSDIGGPSANMWNANCTLERGKCKRKSCLVPKVCPNFKY 401

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV--LMPYLHLPVQSGSD 300
           ++     LL    ++ G+  +R  +    D+      +  D+    +   L +  +  + 
Sbjct: 402 DQKANLKLLRDAQKMDGIKHVRVASGVRYDLGQKDKTSLKDIFKEFVGGQLKVAPEHIAP 461

Query: 301 RILKSMNRRHTAYEYRQIIDRI----RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
            +LK M +      +   ++      +    +  +    +  FPG TD+D R     +  
Sbjct: 462 SVLKHMRKP-DLPIFESFLEMFAVESKKAGKEQYVIPYLMSAFPGCTDNDMRHLASWLAA 520

Query: 357 IGYAQAFSFKYSPRLGTPGSNM 378
            G+       + P  GT  + M
Sbjct: 521 RGWKPRQVQCFIPTPGTVATAM 542


>gi|88601911|ref|YP_502089.1| radical SAM family protein [Methanospirillum hungatei JF-1]
 gi|88187373|gb|ABD40370.1| Radical SAM [Methanospirillum hungatei JF-1]
          Length = 557

 Score = 56.9 bits (136), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 44/253 (17%), Positives = 89/253 (35%), Gaps = 29/253 (11%)

Query: 153 DYSVEDKFERL-SIVDGGYNRKRGVTAFLTIQEGCDK----FCTFCVVPYTRGIEISRSL 207
            Y  ED +  L + +   +     V   +    GC +     C+FC  P   G    RSL
Sbjct: 155 SYEKEDPWSELGASIICQHPNYPYVMCEIETARGCSREVTGGCSFCTEP-LYGKPQYRSL 213

Query: 208 SQVVDEARKLIDNGVCEITLLGQ-NVNAW---RGKGLDGEKCTFSDLLYSLS-EIKGLVR 262
             + +E   L   G     +  Q ++  W   +G+    +     +L  S+      L  
Sbjct: 214 QGIKNEVSALAQAGAAHFRIGRQPDILTWQAGKGEFPVPKPDLIEELFSSVRTSAPSLKT 273

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPY------LHLPVQSGSDRILKSMNRRHTAYEYR 316
           L     +P  ++    +A   L  ++ +          +++    +++  N + T     
Sbjct: 274 LHIDNVNPGTIARHPEEAGESLSAIIRHHTPGDIAAFGMETADPVVIEENNLKATPDMVM 333

Query: 317 QIIDRIRSV-------RPDIAISSDFIVGFPGETDDDFRATMDLVDKI---GYA--QAFS 364
           + I  +  V        P++    +FI G  GE+ + +    + ++ +   GY   +   
Sbjct: 334 EAIRIVHEVGSLRRDGIPELLPGLNFIAGLAGESLNTYTLNREFLENVLQKGYLIRRVNI 393

Query: 365 FKYSPRLGTPGSN 377
            +  P  GT  S 
Sbjct: 394 RQLMPCEGTKASK 406


>gi|56696970|ref|YP_167332.1| lipoyl synthase [Ruegeria pomeroyi DSS-3]
 gi|56678707|gb|AAV95373.1| lipoic acid synthetase [Ruegeria pomeroyi DSS-3]
          Length = 316

 Score = 56.9 bits (136), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 40/261 (15%), Positives = 86/261 (32%), Gaps = 26/261 (9%)

Query: 131 QTYYRLPELLE-RARFGKRVVDTDYSVEDK-----FERLSIVDGGYNRKRGVTAFLTIQE 184
           Q   + P+ +  +A  GK   DT   + D       E     + G    +G    + + E
Sbjct: 20  QAQPKKPDWIRVKAPGGKGYADTRRIMRDNNLVTVCEEAGCPNVGECWSQGHATMMIMGE 79

Query: 185 GCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK 244
            C + CTFC +    G   +    +    A  +   G+  + +   +    R    DG  
Sbjct: 80  ICTRGCTFCNI--ATGRPDALDAFEPGRVAHAVEKLGLNHVVITSVD----RDDLADGGA 133

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIK-AHGDLDVLMPY---LHLPVQSGSD 300
             F+  + ++        +   T      +  +++        +  +       +     
Sbjct: 134 EHFAQTIRAIRHRSPSTTIEILTPDFLKCAPEVLEVVVASKPDVFNHNLETVPGLYP--- 190

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
                +      +   +++ R++ + P I   S  +VG  GET+   R  MD +      
Sbjct: 191 ----EVRPGARYFHSLRLLQRVKELDPSIFTKSGIMVGL-GETEQQVRQVMDDMRAADID 245

Query: 361 QAFSFKYSPRLGTPGSNMLEQ 381
                +Y     TP  + +++
Sbjct: 246 FLTIGQY--LQPTPKHHRVDR 264


>gi|87312223|ref|ZP_01094324.1| hypothetical protein DSM3645_04885 [Blastopirellula marina DSM
           3645]
 gi|87285048|gb|EAQ76981.1| hypothetical protein DSM3645_04885 [Blastopirellula marina DSM
           3645]
          Length = 341

 Score = 56.9 bits (136), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 65/212 (30%), Gaps = 14/212 (6%)

Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN---GVCEITLLGQNVNAWRGKGLDGEK 244
             CTFC             + ++ D+    I            +     A          
Sbjct: 74  GGCTFCDNRSF-SPSRRVPIRKITDQIDDGIRRLKIRYKVERFIAYFQPATNTYAPVERL 132

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304
               +   S  ++ G+         P  +   L+    +   L   +   +Q+  +R L 
Sbjct: 133 RPLYEQAVSHEKVVGMAIGTRPDCVPPPV-MDLLAEMAERTYL--TVEYGLQTIHNRSLD 189

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
            MNR H    +   ++  RS      I +  ++G PGE+  D  AT   + +        
Sbjct: 190 WMNRGHHVDAFYDAVE--RSQGRGFEICAHVMLGLPGESHADMMATAQAIAQSPIQSVKI 247

Query: 365 FKYSPRLGTPGSNMLEQVDENVKAERLLCLQK 396
                   TP   + +QV       RL+ L +
Sbjct: 248 HNLYCVKKTP---LADQVAAGEV--RLMELDE 274


>gi|194432520|ref|ZP_03064806.1| lipoic acid synthetase [Shigella dysenteriae 1012]
 gi|194419081|gb|EDX35164.1| lipoic acid synthetase [Shigella dysenteriae 1012]
 gi|320178417|gb|EFW53385.1| Lipoate synthase [Shigella boydii ATCC 9905]
 gi|332094300|gb|EGI99351.1| lipoic acid synthetase [Shigella boydii 5216-82]
 gi|332096800|gb|EGJ01790.1| lipoic acid synthetase [Shigella dysenteriae 155-74]
          Length = 321

 Score = 56.9 bits (136), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 32/183 (17%), Positives = 67/183 (36%), Gaps = 12/183 (6%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V    G  ++   ++ V  A+ + D  +  + +   +    R    DG   
Sbjct: 94  CTRRCPFCDV--AHGRPVAPDANEPVKLAQTIADMALRYVVITSVD----RDDLRDGGAQ 147

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAH-GDLDVLMPYLHLPVQSGSDRILK 304
            F+D + ++ E    +++       R   D  +         +  +    V     RI +
Sbjct: 148 HFADCITAIREKSPQIKIETLVPDFRGRMDRALDILTATPPDVFNHNLENV----PRIYR 203

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
            +          ++++R +   P+I   S  +VG  GET+++    M  +   G      
Sbjct: 204 QVRPGADYNWSLKLLERFKEAHPEIPTKSGLMVGL-GETNEEIIEVMRDLRHHGVTMLTL 262

Query: 365 FKY 367
            +Y
Sbjct: 263 GQY 265


>gi|194749695|ref|XP_001957274.1| GF24134 [Drosophila ananassae]
 gi|306755877|sp|B3M996|LIAS_DROAN RecName: Full=Lipoyl synthase, mitochondrial; AltName: Full=Lipoate
           synthase; Short=LS; Short=Lip-syn; AltName: Full=Lipoic
           acid synthase; Flags: Precursor
 gi|190624556|gb|EDV40080.1| GF24134 [Drosophila ananassae]
          Length = 376

 Score = 56.9 bits (136), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 30/187 (16%), Positives = 65/187 (34%), Gaps = 17/187 (9%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQV--VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
           C + C FC V   R       L +   V+ A  +   G+  I L   +    R    DG 
Sbjct: 134 CTRGCRFCSVKTARKP---PPLDENEPVNTATAIASWGLDYIVLTSVD----RDDLPDGG 186

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCL--IKAHGDLDVLMPYLHLPVQSGSDR 301
               +    ++ EIK      +      D    L  ++   +  + +   ++        
Sbjct: 187 SKHIA---KTVKEIKARNSNIFVECLVPDFRGDLGCVETIANCGLDVYAHNIETVEKLTP 243

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
            ++     +   +  +++   +   P++   S  ++G  GETD++   T+  + + G   
Sbjct: 244 YVRDRRAHYR--QTLKVLSEAKRFNPNLITKSSIMLGL-GETDEEVENTLKDLREAGVDC 300

Query: 362 AFSFKYS 368
               +Y 
Sbjct: 301 ITLGQYM 307


>gi|83746899|ref|ZP_00943946.1| Lipoic acid synthetase [Ralstonia solanacearum UW551]
 gi|207742165|ref|YP_002258557.1| lipoyl synthase (lipoic acid synthase) (lipoate
           synthase)(lipoyl-acyl-carrier protein synthase) (sulfur
           insertion protein lipa) (lip-syn) [Ralstonia
           solanacearum IPO1609]
 gi|83726484|gb|EAP73615.1| Lipoic acid synthetase [Ralstonia solanacearum UW551]
 gi|206593553|emb|CAQ60480.1| lipoyl synthase (lipoic acid synthase) (lipoate
           synthase)(lipoyl-acyl-carrier protein synthase) (sulfur
           insertion protein lipa) (lip-syn) [Ralstonia
           solanacearum IPO1609]
          Length = 338

 Score = 56.9 bits (136), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 34/210 (16%), Positives = 70/210 (33%), Gaps = 16/210 (7%)

Query: 161 ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS--QVVDEARKLI 218
           E  S  + G    +G   F+ + + C + C FC V + R       L   +  + A+ + 
Sbjct: 81  EEASCPNIGECFGKGTATFMIMGDKCTRRCPFCDVGHGRPD----PLDTNEPENLAKTIA 136

Query: 219 DNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLI 278
              +  + +   +    R    DG    + D +     +    R+       R   +  +
Sbjct: 137 QLRLNYVVITSVD----RDDLRDGGAQHYVDCISRTRALSPATRIEVLVPDFRGRLEKAL 192

Query: 279 KAH-GDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIV 337
                    +M +    V     R+ K            +++   ++  P+I   S  +V
Sbjct: 193 DILQACPPDVMNHNMETV----PRLYKQARPGADYAHSLKLLKDFKARNPNIPTKSGLMV 248

Query: 338 GFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           G  GETD++    M  + +         +Y
Sbjct: 249 GL-GETDEEILQVMRDMREHDIDMLTIGQY 277


>gi|269101998|ref|ZP_06154695.1| lipoate synthase [Photobacterium damselae subsp. damselae CIP
           102761]
 gi|268161896|gb|EEZ40392.1| lipoate synthase [Photobacterium damselae subsp. damselae CIP
           102761]
          Length = 304

 Score = 56.5 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 29/182 (15%), Positives = 61/182 (33%), Gaps = 10/182 (5%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V    G  +  S  +    A+ + D  +  + +   +    R    DG   
Sbjct: 77  CTRRCPFCDV--AHGRPLPPSAEEPSHLAQTIADMNLRYVVVTSVD----RDDLRDGGAK 130

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
            F+D    +      +R+       R   D  ++   D     P +       + R+ + 
Sbjct: 131 HFADCTREIRAKSPNIRIETLVPDFRGRMDRALEELQDNP---PDVFNHNLETAPRLYRK 187

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           +           ++ + +   P+I   S  ++G  GET ++    +  +   G       
Sbjct: 188 VRPGANYQWSLDLLKKFKEQHPEIPTKSGLMMGL-GETKEEIVEVLKDLRAHGVTMLTLG 246

Query: 366 KY 367
           +Y
Sbjct: 247 QY 248


>gi|29832004|ref|NP_826638.1| hypothetical protein SAV_5461 [Streptomyces avermitilis MA-4680]
 gi|29609122|dbj|BAC73173.1| hypothetical protein [Streptomyces avermitilis MA-4680]
          Length = 652

 Score = 56.5 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 58/321 (18%), Positives = 104/321 (32%), Gaps = 63/321 (19%)

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
             V+D D     K   + + +  + R       + I  GC + C FC           RS
Sbjct: 243 HTVMDLDEWPYPKQPLVPLAETVHERMS-----VEIFRGCTRGCRFCQAGMITRPVRERS 297

Query: 207 LSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE--IKGLVRL 263
           ++ + D   K +   G  E+ LL  +       G         DL   L++   +  + L
Sbjct: 298 ITGIGDMVEKGLKATGFEEVGLLSLSSADHSEIG---------DLAKGLADRYEEDKIGL 348

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR-- 321
              ++     +  L             L    + GS+R+ K +N+  +  +  + +    
Sbjct: 349 SLPSTRVDAFNVDLANELTRNGR-RSGLTFAPEGGSERMRKVINKMVSEEDLIRTVSTAY 407

Query: 322 ---IRSVRPDIAISSDFIVGFPGETDDDFRA----TMDLVDKIGYAQ--------AFSFK 366
               R V+        F+ G P ETD+D        M+++ +                  
Sbjct: 408 GNGWRQVK------LYFMCGLPTETDEDVLQIADMAMNVIAEGRKVSGQNDIRCTVSIGG 461

Query: 367 YSPRLGTPGSNMLEQVDENVKAERLLCLQKKLR---------------------EQQVSF 405
           + P+  TP      Q+       RL  L+ K+R                     E  +S 
Sbjct: 462 FVPKPHTP-FQWAPQLSAEETDARLGKLRDKIRGDKKYGRSIGFRYHDGKPGIVEGLLSR 520

Query: 406 NDACVGQIIEVLIEKHGKEKG 426
            D  +G +I  + E  G+  G
Sbjct: 521 GDRRIGSVIRAVYEDGGRFDG 541


>gi|320530171|ref|ZP_08031241.1| radical SAM domain protein [Selenomonas artemidis F0399]
 gi|320137604|gb|EFW29516.1| radical SAM domain protein [Selenomonas artemidis F0399]
          Length = 502

 Score = 56.5 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 48/213 (22%), Positives = 83/213 (38%), Gaps = 9/213 (4%)

Query: 174 RGVTAFLTIQEGCDKFCTFCVVP--YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQN 231
           R V+ ++ I   C   C +C  P     G E  R    V+          +  + L  QN
Sbjct: 171 RTVSVYVGIPF-CITRCLYCSFPANILPGEEKLRGFMCVLARDIAAAAADIAALGLTVQN 229

Query: 232 VNAWRGKGLDGEKCTFSDLLYSLSEI---KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLM 288
           +    G         F+++L  +        +V        P  MS   I         +
Sbjct: 230 IYVGGGTPTSLPNDFFAEMLEMVYNAFYGSSIVEFTVEAGRPDSMSAEKISCMKKYR--V 287

Query: 289 PYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFR 348
             + +  QS  +R L+ + RRHT  E  Q++  +R+   D+ I+ D I+G PGET +D  
Sbjct: 288 TRVSVNPQSMQERTLRRIGRRHTPAEVVQMLRDLRAAY-DVHINMDVILGLPGETAEDVA 346

Query: 349 ATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           ++M  V  +          + + G+    M+E+
Sbjct: 347 SSMAQVTALAPDDITLHALAIKRGSQLRRMMEE 379


>gi|84496862|ref|ZP_00995716.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Janibacter sp. HTCC2649]
 gi|84383630|gb|EAP99511.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Janibacter sp. HTCC2649]
          Length = 424

 Score = 56.5 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 40/245 (16%), Positives = 78/245 (31%), Gaps = 44/245 (17%)

Query: 171 NRKRGVTAFLTIQEGCDKFCTFC------VVPYTRGIEISRSLSQVVDEARKLIDNGVCE 224
            R  G+   +     C   C +C      +     G   S  +   + E           
Sbjct: 26  KRPFGIYLHVPF---CRVRCGYCDFNTYTLTELGPGASTSTFIDTTLAELDLAQA----- 77

Query: 225 ITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL 284
             +LG +        + G   T       +  + G+ R R+  +   +++        + 
Sbjct: 78  --VLGDSAPRVDTIFVGGGTPTMLAAADLVKAVDGI-RDRFGLADDVEVTTE-----ANP 129

Query: 285 DVLMP------------YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAIS 332
           D + P             + L +QS    +L +++R H      + +   +     +  S
Sbjct: 130 DSVTPDSLRELADGGFTRISLGMQSAVPHVLATLDRTHDPAGVEKAVRAAQDA--GMVTS 187

Query: 333 SDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS--------NMLEQVDE 384
            D I G PGE+ DD+R ++D    +      ++      GT  +           +  DE
Sbjct: 188 VDLIYGTPGESVDDWRRSLDQAISLESEHVSAYALVVEEGTKLAAQVRRGEVARPDDDDE 247

Query: 385 NVKAE 389
             K E
Sbjct: 248 ATKYE 252


>gi|328792602|ref|XP_625022.2| PREDICTED: lipoyl synthase, mitochondrial [Apis mellifera]
          Length = 366

 Score = 56.5 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 31/183 (16%), Positives = 69/183 (37%), Gaps = 10/183 (5%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V  +R      +  + ++ A  + D G+  + L   +    R    DG   
Sbjct: 129 CTRGCRFCSVKTSRTPL-PLNPEEPINTAIAITDWGLDYVVLTSVD----RDDLNDGGAN 183

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
             ++ +  + +   ++          D     I  + +LDV    +   V+  +  + + 
Sbjct: 184 HIAETVKEIKKRTNILVECLVPDFRGDKDCIEIIVNSNLDVFAHNIET-VERLTPFV-RD 241

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
               +      +++   +   P++   S  ++G  GETD++   TM  + +IG       
Sbjct: 242 RRAEYRQS--LKVLKIAKKCNPELITKSSIMLGL-GETDEEIEQTMKNLREIGVDALTLG 298

Query: 366 KYS 368
           +Y 
Sbjct: 299 QYM 301


>gi|229829097|ref|ZP_04455166.1| hypothetical protein GCWU000342_01182 [Shuttleworthia satelles DSM
           14600]
 gi|229792260|gb|EEP28374.1| hypothetical protein GCWU000342_01182 [Shuttleworthia satelles DSM
           14600]
          Length = 627

 Score = 56.5 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 39/279 (13%), Positives = 86/279 (30%), Gaps = 32/279 (11%)

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
           RV        D           + R       + I  GC + C FC           +SL
Sbjct: 232 RVRRQVMMDMDHATYPVHPIVPFVRSVQDRVVIEIMRGCIRGCRFCQAGMVYRPTREKSL 291

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
           + +     +++ +   +   L    ++      D                   + +   +
Sbjct: 292 ATLKSYVEEMLSSSGYDEISLSSLSSSDYRGLSDFLDYLIDKCDRE------KINISLPS 345

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
                 S  ++    D+      +    ++GS R+   +N+  +     +I+   +    
Sbjct: 346 LRIDAFSLDVMSKIQDVRK--SSVTFAPEAGSQRMRDVINKGISLE---EIMSGAKEAFH 400

Query: 328 D--IAISSDFIVGFPGETDDDFRATMDL--------VDKIGYAQAF--------SFKYSP 369
                +   F++G P ETD+D  A   L         ++I   Q          +  + P
Sbjct: 401 GGWNKLKLYFMLGLPTETDEDIMAIPRLGNDLAALYFEEIPKDQRNGRAQITMSTSFFVP 460

Query: 370 RLGTPGSNMLEQVDEN-VKAERL--LCLQKKLREQQVSF 405
           +  TP         E+ ++  RL    + ++L  + + +
Sbjct: 461 KPFTPFQWAPMHPPEDYIRRARLVKDTMHEQLNRKSLHY 499


>gi|169830380|ref|YP_001716362.1| radical SAM domain-containing protein [Candidatus Desulforudis
           audaxviator MP104C]
 gi|169637224|gb|ACA58730.1| Radical SAM domain protein [Candidatus Desulforudis audaxviator
           MP104C]
          Length = 370

 Score = 56.5 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 40/246 (16%), Positives = 75/246 (30%), Gaps = 22/246 (8%)

Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC--V 194
            E++     G    D  Y   D      + D  + R     A +     C + C +C   
Sbjct: 43  EEIVALLTAGDADTDALYRAADAVRAGHVGDTVHLR-----AIIEFSNHCVQNCLYCGLR 97

Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL 254
               R      S  ++   A    D G   + L         G+         + L++ L
Sbjct: 98  RNNRRLFRYRMSPDEIFAAAAVARDQGYRTVVLQS-------GEDPGYPTSELARLVHRL 150

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
            +   +         PR +   L  A  D         L  ++    +   +    T   
Sbjct: 151 KDQLDVAVTLSVGELPRVVYRELRTAGADR------YLLKHETADPALFARLRPGTTLAG 204

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
             + +  +R +     + S  +VG PG+T +   A + L+ ++    A    + P   TP
Sbjct: 205 RLEKLVWLREL--GYQVGSGNMVGLPGQTVESLAADVILLRELEVEMAGIGPFIPHPDTP 262

Query: 375 GSNMLE 380
            +    
Sbjct: 263 LAGAPP 268


>gi|134300368|ref|YP_001113864.1| radical SAM domain-containing protein [Desulfotomaculum reducens
           MI-1]
 gi|134053068|gb|ABO51039.1| Radical SAM domain protein [Desulfotomaculum reducens MI-1]
          Length = 296

 Score = 56.5 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 47/234 (20%), Positives = 86/234 (36%), Gaps = 18/234 (7%)

Query: 179 FLTIQEGCDKF-CTFCVVPYTRGIEISRSLSQVVDEARKLIDN--GVCEITLLGQNVNAW 235
            L + EGC    CTFC + Y       RSL +V  E +++     G+  + L   N    
Sbjct: 20  ILRVTEGCSHNKCTFCSM-YRNIRFRVRSLDEVECEIQQMASFYPGLRRVFLADGNALVL 78

Query: 236 RGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPV 295
                       + +         L R+    +    +     +        +  ++L +
Sbjct: 79  NTD------KLLAIMKKLHVAFPMLTRITCYGAPKDILHKKPDELKALQRAGLQIIYLGI 132

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGE--TDDDFRATMDL 353
           +SG D++L  +N+  TA E      R+      I +S+  I+G  G+  T+     T  +
Sbjct: 133 ESGDDQVLSDINKGVTANEMIAAGQRVLEA--GIKLSAMVILGLGGQQYTNSHALNTARV 190

Query: 354 VDKIGYAQAFSFKYSPRLGTP---GSNMLEQVDENVKAERLLCLQKKLREQQVS 404
           ++ IG         +   GTP     +  + +    + E LL L++ L    V 
Sbjct: 191 INAIGPTMLGVLTLALFDGTPLKDAVDRGDFLPLTTR-ETLLELKEMLENINVQ 243


>gi|331269660|ref|YP_004396152.1| bioB/LipA-like protein [Clostridium botulinum BKT015925]
 gi|329126210|gb|AEB76155.1| bioB/LipA-like protein [Clostridium botulinum BKT015925]
          Length = 365

 Score = 56.5 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 33/204 (16%), Positives = 68/204 (33%), Gaps = 4/204 (1%)

Query: 176 VTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW 235
           +       EGC   C FC      G       + V +   + +     E +++  +    
Sbjct: 10  IIPIFVPHEGCPHDCVFCNQNSITGSSSKVDKNFVENTIEEYLKTINKENSIIEVSFFGG 69

Query: 236 RGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPV 295
               +D  K      +    +  G +   + ++ P  + D +++   D    +  + L V
Sbjct: 70  TFTAIDINKQNELLSVAKRYKDLGKIDYIHLSTRPDYIDDNILRNLKDYSADV--IELGV 127

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
           QS  D +L    R HT  +  +    I+       +    ++G PG+  +    T   + 
Sbjct: 128 QSLDDEVLLKSGRGHTVDDVVKASQLIKEY--GFVLGLQVMLGLPGDNFEKDIYTAKKII 185

Query: 356 KIGYAQAFSFKYSPRLGTPGSNML 379
           ++    A  +       TP   M 
Sbjct: 186 ELKPEIARIYPALVVKNTPMETMY 209


>gi|284041893|ref|YP_003392233.1| biotin synthase [Conexibacter woesei DSM 14684]
 gi|283946114|gb|ADB48858.1| biotin synthase [Conexibacter woesei DSM 14684]
          Length = 339

 Score = 56.5 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 37/209 (17%), Positives = 72/209 (34%), Gaps = 28/209 (13%)

Query: 185 GCDKFCTFCV------VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK 238
           GC + C FC        P          +  +V+ AR+ +  G  E  ++     A RG 
Sbjct: 74  GCPEDCHFCSQSGRFDTPVRAARL---DVDSLVEAARQTVATGATEFCIVA----AVRGP 126

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSD--CLIKAHGDLDVLMPYLHLPVQ 296
                +   + +   +  I+  V +    S      +    ++A  D+      L     
Sbjct: 127 D----ERLMAQVREGIDAIRAAVDVNIACSLGILTPEQADELQAM-DVHRYNHNLETARS 181

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
             +D +       HT  E R+ ++ +R+    + +    IVG  GET +        +  
Sbjct: 182 HFTDVV-----TTHTWEERRETLELVRAR--GMEVCCGCIVGM-GETLEQRAELAGQLAD 233

Query: 357 IGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
           +   +       PR GTP +++      +
Sbjct: 234 VDPDEVPLNFIDPRPGTPFADLPHVEPAD 262


>gi|167756186|ref|ZP_02428313.1| hypothetical protein CLORAM_01716 [Clostridium ramosum DSM 1402]
 gi|237734133|ref|ZP_04564614.1| Mg-protoporphyrin IX monomethyl ester oxidative cyclase [Mollicutes
           bacterium D7]
 gi|167704178|gb|EDS18757.1| hypothetical protein CLORAM_01716 [Clostridium ramosum DSM 1402]
 gi|229382693|gb|EEO32784.1| Mg-protoporphyrin IX monomethyl ester oxidative cyclase
           [Coprobacillus sp. D7]
          Length = 541

 Score = 56.5 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 57/305 (18%), Positives = 102/305 (33%), Gaps = 44/305 (14%)

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           I+ L +   K    L++V+ G     E +  L    I  ++ G        ELL+     
Sbjct: 70  IKILIDKLKKMDPQLVIVIGGPEVSYEIDYFLDNFKIDYLISGEGEV-AFKELLDCLETQ 128

Query: 147 KRVVDTDYSVEDKFER----------LSIVDGGYNRKRGV------TAFLTIQEGCDKFC 190
           + +     S +DK +           L  ++  Y  KR +        +     GC   C
Sbjct: 129 QPINIQGISRKDKRDYQQTKPVDLQYLETLESPYLLKRDLADMDKRILYFETSRGCPYQC 188

Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDL 250
            +C+    +G     SL  +  +   L+D+GV  I LL ++ NA             +  
Sbjct: 189 QYCLSSLEKG-LRFFSLDYLKAQLSLLLDSGVKTIKLLDRSFNAKT-----------AHA 236

Query: 251 LYSLSEIKGLVRLRY---TTSHPRDMSDCLIKAHGDL-DVLMPYLHLPVQSGSDRILKSM 306
           L  L  I    R         +   +   +I    D     +    + +QS  +   + +
Sbjct: 237 LAILEFIFKHYRPGIQFQFEINGDVLDQRIIDYINDYAPRGLLRFEIGIQSTYEPTNEIV 296

Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
            R        ++I +++     I    D I G P E  + F  + D V          F 
Sbjct: 297 KRYQNFERLSEVIKQLQQN-HKIDFHLDLIAGLPLENLERFARSFDDV----------FA 345

Query: 367 YSPRL 371
           + P+ 
Sbjct: 346 FYPKE 350


>gi|50120236|ref|YP_049403.1| lipoyl synthase [Pectobacterium atrosepticum SCRI1043]
 gi|81645768|sp|Q6D7M8|LIPA_ERWCT RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|49610762|emb|CAG74207.1| lipoic acid synthetase [Pectobacterium atrosepticum SCRI1043]
          Length = 321

 Score = 56.5 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 31/183 (16%), Positives = 67/183 (36%), Gaps = 12/183 (6%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V    G  ++   ++    A+ + D G+  + +   +    R    DG   
Sbjct: 94  CTRRCPFCDV--AHGRPLTPDANEPEKLAQTIHDMGLRYVVITSVD----RDDLRDGGAQ 147

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAH-GDLDVLMPYLHLPVQSGSDRILK 304
            F+D + ++      +R+       R   D  ++        +  +    V     R+ +
Sbjct: 148 HFADCISAIRRKNPHIRIETLVPDFRGRMDRALEILTATPPDVFNHNLENV----PRVYR 203

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
            +          ++++  ++  PDI   S  +VG  GET+ +    M  + + G      
Sbjct: 204 QVRPGANYEWSLKLLENFKNAHPDITTKSGLMVGL-GETNAEIVEVMRDLRRHGVTMLTL 262

Query: 365 FKY 367
            +Y
Sbjct: 263 GQY 265


>gi|116748320|ref|YP_845007.1| radical SAM domain-containing protein [Syntrophobacter fumaroxidans
           MPOB]
 gi|116697384|gb|ABK16572.1| Radical SAM domain protein [Syntrophobacter fumaroxidans MPOB]
          Length = 359

 Score = 56.5 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 31/202 (15%), Positives = 71/202 (35%), Gaps = 11/202 (5%)

Query: 185 GCDKFCTFC---VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQ--NVNAWRGKG 239
           GC   C +C    V    G   S +   ++   R  +D    +    G    ++ + G  
Sbjct: 26  GCPFRCVYCNQNAVTAPCGPSESGTAQDILRIFRLGLDRLTADARRCGIAGEISFYGGTF 85

Query: 240 LDGEKCTFSDLLYSLS--EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQS 297
                     +L +++    +GL      ++ P  +++  ++   D    +  + L VQS
Sbjct: 86  TSLPIAVLRQILDTVNVPIKEGLFTGIRFSTRPDALTEPCLELLSDYP--VRTVELGVQS 143

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
            S+ +L+   R +      +    +R+      +    + G PG+T + F  ++     +
Sbjct: 144 LSETVLERSRRGYGVRTVERACAAVRAR--GWRLGLQLMPGLPGDTCEVFLESLRRTIGL 201

Query: 358 GYAQAFSFKYSPRLGTPGSNML 379
           G      +       T  ++  
Sbjct: 202 GPEFVRLYPTLVLKDTTLADWY 223


>gi|260890898|ref|ZP_05902161.1| BchE/P-methylase family protein [Leptotrichia hofstadii F0254]
 gi|260859451|gb|EEX73951.1| BchE/P-methylase family protein [Leptotrichia hofstadii F0254]
          Length = 303

 Score = 56.5 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 78/232 (33%), Gaps = 31/232 (13%)

Query: 61  DADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRR 120
           + DL+V++T  +             R   L  +  K G  + V++ G  A    +E+   
Sbjct: 53  EVDLVVISTFTMTA----------RRAYELAENYRKRG--VYVMIGGYHASLMPDEVQEH 100

Query: 121 SPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFL 180
           +  V V  G  T+      LE     KR       + D    +        +K      +
Sbjct: 101 ADTVCVGSGEVTWNEFLNDLENGVPKKRY--ECRKLPDINNVVYDRSIYKGKKYSFVVPV 158

Query: 181 TIQEGCDKFCTFCVVPYTR-GIEISRSLSQVVDEARKLI--DNGVCEITLLGQNVNAWRG 237
               GC   C FC +     G    R +  V++E +++   +     +  +  N+ A   
Sbjct: 159 QFGRGCMHQCEFCTIGAVHKGDFQHRDVENVINEVKEIFRTNKRAKIVYFVDDNIFA--- 215

Query: 238 KGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDC--LIKAHGDLDVL 287
                 K     L   L ++K    +++      D++    LIK   +   +
Sbjct: 216 -----NKKKALKLFEELKKLK----IKWACQGSIDIARDEKLIKLMSEAGCI 258


>gi|238062987|ref|ZP_04607696.1| tryptophanase [Micromonospora sp. ATCC 39149]
 gi|237884798|gb|EEP73626.1| tryptophanase [Micromonospora sp. ATCC 39149]
          Length = 596

 Score = 56.5 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 75/220 (34%), Gaps = 24/220 (10%)

Query: 173 KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS-RSLSQVVDEARKLIDNGVCEITLLGQN 231
           + G    +  + GC   C  CV P  +G   + R  + VVDE   L+  G+ ++      
Sbjct: 235 RSGGLGSILTKNGCPYRCAHCVEPNAKGTSFAGRDTAAVVDEMEMLLAQGIHDLHTTDSE 294

Query: 232 VNAWRGKGLDGEKCTFSDLLYSLSEIKG------LVRLRYTTSHPRDMSDCLIKAHGDLD 285
            N      + G K    +++       G       + +    +   +    L+ A G   
Sbjct: 295 FNLN----IAGSKNLLREIVRRKDADHGSPLHQLRLWVYCQPAPFDEEFAELLAAAGCAG 350

Query: 286 VLMPYLHLPVQSGSDRILKSMNRRHTA-YEYRQIIDRIRSVRPDIAISSDFIVGFPGETD 344
           + +   H+         + +  RR+    +  +++        D+    + + G PGET 
Sbjct: 351 INVGADHVRHDLLDSWKVTAGGRRYYRHEDTERLVKLCHKN--DMLTMVEALFGMPGETP 408

Query: 345 DDFRATMDLVDKIGYAQAFS--------FKYSPRLGTPGS 376
              R  +D  + +G     +        F Y P   +  +
Sbjct: 409 RTMRECVD--EFLGLDATVTGFSLGLRLFPYIPLGASVAA 446


>gi|16803701|ref|NP_465186.1| hypothetical protein lmo1661 [Listeria monocytogenes EGD-e]
 gi|224503673|ref|ZP_03671980.1| hypothetical protein LmonFR_14405 [Listeria monocytogenes FSL
           R2-561]
 gi|16411097|emb|CAC99739.1| lmo1661 [Listeria monocytogenes EGD-e]
          Length = 321

 Score = 56.5 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 41/195 (21%), Positives = 73/195 (37%), Gaps = 19/195 (9%)

Query: 188 KFCTFCVVPYTRGIEISRSLS------QVVDEARKLIDNGVCEITLLG-QNVNAWRGKGL 240
             CTFC    +     +R+L       QV D+ +    +G C        N +A   +  
Sbjct: 52  GGCTFCSAAGSGDFAGNRALDLKIQFQQVRDKMQTKWKDGKCIAYFQAFTNTHAPVAE-- 109

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL-DVLMPYLHLPVQSGS 299
                   +   ++    G+V L    + P  + D +++   +L +    +L L +QS  
Sbjct: 110 ------LREKFETVLNEPGVVGLSI-ATRPDCLPDDVVEYLAELNERTYLWLELGLQSAH 162

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
           D   + +NR H    Y + + +++    +I I +  I G P ET +    T   V + G 
Sbjct: 163 DETGRLINRAHDYDCYVEGVRKLQK--HNIRICTHIINGLPKETPEMMMETTRKVVESGV 220

Query: 360 AQAFSFKYSPRLGTP 374
                       GTP
Sbjct: 221 DGIKIHLLHLLKGTP 235


>gi|323699342|ref|ZP_08111254.1| Radical SAM domain protein [Desulfovibrio sp. ND132]
 gi|323459274|gb|EGB15139.1| Radical SAM domain protein [Desulfovibrio desulfuricans ND132]
          Length = 462

 Score = 56.5 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 31/205 (15%), Positives = 62/205 (30%), Gaps = 18/205 (8%)

Query: 174 RGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVN 233
               + L    GC   C +C            +   V+   +     GV +       + 
Sbjct: 223 DPPYSILLGSRGCPFHCEYCASHALYPRFRQGTADAVMKSIQSEHGRGVRDFAFYDDALL 282

Query: 234 AWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCL---IKAHGDLDVLMPY 290
                 ++ ++  +  L    +   GL        H R ++  +   +KA G   V +  
Sbjct: 283 ------INPDRWLWPVLDRITAADLGLRLHTPNAMHVRHLTPEVCARLKAAGLTTVRLGL 336

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI-AISSDFIVGFPGETDDDFRA 349
                    D  L       T  ++      + S   ++  I    + G PG+   +   
Sbjct: 337 ETTDFDHRHDVKL-------TREQWEAGARNLVSAGFELDDIGVYILFGLPGQDLGNVER 389

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTP 374
            +  V   G+ +     Y+P  G+P
Sbjct: 390 AVAHVRGYGF-RPHLAHYTPIPGSP 413


>gi|75906809|ref|YP_321105.1| radical SAM family protein [Anabaena variabilis ATCC 29413]
 gi|75700534|gb|ABA20210.1| Radical SAM [Anabaena variabilis ATCC 29413]
          Length = 544

 Score = 56.5 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 61/267 (22%), Positives = 108/267 (40%), Gaps = 27/267 (10%)

Query: 179 FLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK 238
            + +   C + C FC+  Y      + SL+  +  A +        + LLG +V      
Sbjct: 227 MVEVVRSCPEMCRFCMASYLTLPFRTASLTDSLIPAIEKGLQVTNRLGLLGASVTQH--- 283

Query: 239 GLDGEKCTFSDLLYSLSEIK-GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQS 297
                   F  LL  +S+ K   VRL   +     +++ L K     D     L + V+S
Sbjct: 284 ------PEFETLLDYISQPKYDDVRLSIASVRTNTVTEQLAKTLAKRDT--RSLTIAVES 335

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPD--IAISSDFIVGFPGETDDDFRATMDLVD 355
           GS++I + +N++       +II    + +     A+    +VG PGET +D  AT+ ++ 
Sbjct: 336 GSEKIRQIINKK---LHNDEIIQAAINAKAGGLTALKLYGMVGLPGETPEDLDATVTMMR 392

Query: 356 KIGYA------QAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFN-DA 408
            I  A            + P+  TP         +  K  RL  LQK+L+ Q + F  ++
Sbjct: 393 SIKKAAPGLRLTLGCSTFVPKAHTP-FQWYGVNRQAEK--RLQSLQKQLKPQGIDFRPES 449

Query: 409 CVGQIIEVLIEKHGKEKGKLVGRSPWL 435
               II+ LI +  +   +L+  +   
Sbjct: 450 YNWSIIQALISRGDRRISQLLELTRDF 476


>gi|323141064|ref|ZP_08075969.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Phascolarctobacterium sp. YIT 12067]
 gi|322414440|gb|EFY05254.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Phascolarctobacterium sp. YIT 12067]
          Length = 400

 Score = 56.5 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 53/122 (43%), Gaps = 6/122 (4%)

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
           +   VQS  D  L+++ R H A +  + +   R       IS+D I G P +T    + T
Sbjct: 130 ISFGVQSLQDDELRAIGRIHNAQQALEALALARKA-GFARISADLIYGLPSQTLTSLQDT 188

Query: 351 MDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ-----VDENVKAERLLCLQKKLREQQVSF 405
           ++ +   G      +      GTP ++++++      D++  A+    +Q  LRE+    
Sbjct: 189 LERLADTGIEHISVYGLIVEDGTPLASLVDKGRITLPDDDTAADMYELVQSFLRERGFER 248

Query: 406 ND 407
            +
Sbjct: 249 YE 250


>gi|270263697|ref|ZP_06191966.1| lipoyl synthase [Serratia odorifera 4Rx13]
 gi|270042581|gb|EFA15676.1| lipoyl synthase [Serratia odorifera 4Rx13]
          Length = 321

 Score = 56.5 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 45/287 (15%), Positives = 95/287 (33%), Gaps = 21/287 (7%)

Query: 118 LRRSPIVNVVVGPQTYYRLPELLERAR-------FGKRVVDTDYSVEDKFERLSIVDGGY 170
           +   P+  VV   Q   R PE ++           G +       +    E  S  +   
Sbjct: 19  MALIPVKTVVTERQELLRKPEWMKIKLPADSTRIQGIKAAMRKNGLHSVCEEASCPNLSE 78

Query: 171 NRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQ 230
               G   F+ +   C + C FC V    G  ++   ++    A+ + D G+  + +   
Sbjct: 79  CFNHGTATFMILGAICTRRCPFCDV--AHGRPVAPDANEPEKLAQTIADMGLRYVVITSV 136

Query: 231 NVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAH-GDLDVLMP 289
           +    R    DG    F+D + ++      +++       R   D  ++        +  
Sbjct: 137 D----RDDLRDGGAQHFADCIAAIRVKNPTIKIETLVPDFRGRMDRALEILTATPPDVFN 192

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +    V     R+ + +          ++++R +   P I   S  +VG  GET+ +   
Sbjct: 193 HNLENV----PRVYRQVRPGANYEWSLKLLERFKEAHPHIPTKSGLMVGL-GETNAEIVE 247

Query: 350 TMDLVDKIGYAQAFSFKYSP--RLGTPGSNMLEQVDENVKAERLLCL 394
            M  + + G       +Y    R   P    +   + +   E  + +
Sbjct: 248 VMRDLRRHGVTMLTLGQYLQPSRHHLPVQRYVSPAEFDEMKEEAMAM 294


>gi|308177470|ref|YP_003916876.1| coproporphyrinogen oxidase [Arthrobacter arilaitensis Re117]
 gi|307744933|emb|CBT75905.1| coproporphyrinogen oxidase [Arthrobacter arilaitensis Re117]
          Length = 409

 Score = 56.5 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 43/247 (17%), Positives = 73/247 (29%), Gaps = 19/247 (7%)

Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV-PYTRGIEISRSLS 208
           V  D         L          R ++ ++ I   C   C +C    YT     S S  
Sbjct: 4   VLPDGDPAPADGLLPASCAHEAAGRTMSFYVHIPF-CTVRCGYCDFNTYTATEPGSGSSQ 62

Query: 209 QVVD-EARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
                   K I      +   GQ           G   T       L  + G +R  +  
Sbjct: 63  ATYAATVSKEISFAREVMDRSGQPHREIETVFFGGGTPTL-LPASDLVSVLGQIREEFGL 121

Query: 268 SHPRDMSDCL---------IKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
               +++            ++   D       +   +QS    +LK + R H      Q 
Sbjct: 122 KPGAEITTEANPDSVTRESLQELADGG--FTRVSFGMQSAVPHVLKVLERTHDPKRVPQA 179

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN- 377
           +   R     + +S D I G PGE+ +D+R +++           ++      GT  +  
Sbjct: 180 VAWAREA--GLDVSVDLIYGTPGESLEDWRTSIEAALSYEPDHISAYALIIEEGTKLAAQ 237

Query: 378 -MLEQVD 383
               QV 
Sbjct: 238 IRRGQVP 244


>gi|167044125|gb|ABZ08808.1| putative Radical SAM superfamily protein [uncultured marine
           crenarchaeote HF4000_APKG5C13]
          Length = 536

 Score = 56.5 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 49/300 (16%), Positives = 103/300 (34%), Gaps = 30/300 (10%)

Query: 78  EKVYSFLGRIRNLKNSRI--KEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135
           EK+     + + +  + I  K+     VVV G  A    +    R   ++ VV  +    
Sbjct: 133 EKLSYVAMKFKKMCANIIQLKKKYGFKVVVGGNGAWELAKSDRMRIHGIDTVVVGEADEL 192

Query: 136 LPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
             +L      G      D          +I +        V + +    GC + C FC V
Sbjct: 193 ALDLFHDLEKG------DAPELLHCFVRNIQNIPEITAPTVNSLIEAMRGCGRGCDFCDV 246

Query: 196 PYTRGIEISR---SLSQVVDEARKLIDNGVCEITLLGQNVN--AWRGKGLDGEKCTFSDL 250
                 + S+    L ++  EA+  +D G   + L    +       +         + L
Sbjct: 247 -----NKRSKKDLPLERLQREAKINLDYGFDSVWLHSDEMLLYGCDNRDFYPNYDAITSL 301

Query: 251 LYSLSEIKG-LVRLRYTTSHPRDMSDCLIKAHGDLDVLMP-----YLHLPVQSGSDRILK 304
              L +I    V   + T         LI    +++ +         +L +++ +  ++K
Sbjct: 302 WKGLKDIGANFVGTTHMTFSGVVADPKLIHDISEINDMHTNGRWLSTNLGIETVAPSLIK 361

Query: 305 SM----NRRHTAYEYRQIIDRIRSV--RPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
                  +  +  E+  ++     +  +     ++  I+G+P ET DD + T+D++    
Sbjct: 362 KHLGVKAKPFSTDEWGWVVREGAKILNKNHWFPAATIIIGWPDETPDDTQYTIDMMSDFR 421


>gi|333015637|gb|EGK34976.1| radical SAM superfamily protein [Shigella flexneri K-227]
          Length = 656

 Score = 56.5 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 44/261 (16%), Positives = 87/261 (33%), Gaps = 48/261 (18%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDN--GVCEIT--LLGQNVNA 234
           + I  GC   C+FC +    G  I SRS   +++E   + D   G   +   L G   N 
Sbjct: 380 VNIMRGCFGGCSFCSITEHEGRIIQSRSEDSIINEIEAIRDTVPGFTGVISDLGGPTANM 439

Query: 235 WR----------------------GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
           +                          +D       +L     ++KG+ ++   +    D
Sbjct: 440 YMLRCKSPRAEQTCRRLSCVYPDICPHMDTNHEPTINLYRRARDLKGIKKILIASGVRYD 499

Query: 273 MSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRRH--TAYEYRQIIDRI-RSVRP 327
           ++    +   +L    +  YL +  +   +  L  M +    +   ++++ D   +    
Sbjct: 500 IAVEDPRYIKELATHHVGGYLKIAPEHTEEGPLSKMMKPGMGSYDRFKELFDTYSKQAGK 559

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGY--AQAFSFKYSPRLGT---------PGS 376
           +  +   FI   PG  D+D       + K  +   Q  +F  SP   +         P +
Sbjct: 560 EQYLIPYFISAHPGTRDEDMVNLALWLKKHRFRLDQVQNFYPSPLANSTTMYYTGKNPLA 619

Query: 377 NMLEQ-----VDENVKAERLL 392
            +  +     V +  K  RL 
Sbjct: 620 KIGYKSEDVFVPKGDKQRRLH 640


>gi|323173741|gb|EFZ59370.1| radical SAM superfamily protein [Escherichia coli LT-68]
          Length = 656

 Score = 56.5 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 44/261 (16%), Positives = 87/261 (33%), Gaps = 48/261 (18%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDN--GVCEIT--LLGQNVNA 234
           + I  GC   C+FC +    G  I SRS   +++E   + D   G   +   L G   N 
Sbjct: 380 VNIMRGCFGGCSFCSITEHEGRIIQSRSEDSIINEIEAIRDTVPGFTGVISDLGGPTANM 439

Query: 235 WR----------------------GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
           +                          +D       +L     ++KG+ ++   +    D
Sbjct: 440 YMLRCKSPRAEQTCRRLSCVYPDICPHMDTNHEPTINLYRRARDLKGIKKILIASGVRYD 499

Query: 273 MSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRRH--TAYEYRQIIDRI-RSVRP 327
           ++    +   +L    +  YL +  +   +  L  M +    +   ++++ D   +    
Sbjct: 500 IAVEDPRYIKELATHHVGGYLKIAPEHTEEGPLSKMMKPGMGSYDRFKELFDTYSKQAGK 559

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGY--AQAFSFKYSPRLGT---------PGS 376
           +  +   FI   PG  D+D       + K  +   Q  +F  SP   +         P +
Sbjct: 560 EQYLIPYFISAHPGTRDEDMVNLALWLKKHRFRLDQVQNFYPSPLANSTTMYYTGKNPLA 619

Query: 377 NMLEQ-----VDENVKAERLL 392
            +  +     V +  K  RL 
Sbjct: 620 KIGYKSEDVFVPKGDKQRRLH 640


>gi|118575748|ref|YP_875491.1| Fe-S oxidoreductase [Cenarchaeum symbiosum A]
 gi|118194269|gb|ABK77187.1| Fe-S oxidoreductase [Cenarchaeum symbiosum A]
          Length = 574

 Score = 56.5 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 35/231 (15%), Positives = 71/231 (30%), Gaps = 22/231 (9%)

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
            G+++     +  D+ E   I +       G    + +  GC + C FC V         
Sbjct: 240 EGEKIHGRFVNFWDRPELDEIPEIVEPSMHG---MIEVMRGCGRGCKFCDVTL--RALRY 294

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNV-----NAWRGKGLDGEKCTFSDLLYSLSEIK- 258
               +V  E       G     +   ++     N    KG++  +    DL   +     
Sbjct: 295 YPPEKVKREIEVNKRFGQTSAWIHSDDIFVYGMNPRTSKGMEPNRDALVDLFKGVMSAGV 354

Query: 259 GLVRLRYTTSHPRDMSDCLI----KAHGDLDVLMPYLHLPVQSGSDRILKSMN----RRH 310
                 + T       + LI    K        M  + +  ++GS R+++         +
Sbjct: 355 KHTNPTHGTLAGAVADEKLIPMLSKIIKSGPENMTGIQVGFETGSLRLIEKYADRKLAPY 414

Query: 311 TAYEYRQIIDRIRSVR--PDIAISSDFIVGFPG-ETDDDFRATMDLVDKIG 358
              E+  ++              +   I+G    ET +D   T+ L+  + 
Sbjct: 415 KPSEWHWLVKEGVKTLNQDYWVPAFTLIMGLNNDETPEDSWETIQLISDLE 465


>gi|332998731|gb|EGK18327.1| radical SAM superfamily protein [Shigella flexneri VA-6]
          Length = 680

 Score = 56.5 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 44/261 (16%), Positives = 87/261 (33%), Gaps = 48/261 (18%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDN--GVCEIT--LLGQNVNA 234
           + I  GC   C+FC +    G  I SRS   +++E   + D   G   +   L G   N 
Sbjct: 380 VNIMRGCFGGCSFCSITEHEGRIIQSRSEDSIINEIEAIRDTVPGFTGVISDLGGPTANM 439

Query: 235 WR----------------------GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
           +                          +D       +L     ++KG+ ++   +    D
Sbjct: 440 YMLRCKSPRAEQTCRRLSCVYPDICPHMDTNHEPTINLYRRARDLKGIKKILIASGVRYD 499

Query: 273 MSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRRH--TAYEYRQIIDRI-RSVRP 327
           ++    +   +L    +  YL +  +   +  L  M +    +   ++++ D   +    
Sbjct: 500 IAVEDPRYIKELATHHVGGYLKIAPEHTEEGPLSKMMKPGMGSYDRFKELFDTYSKQAGK 559

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGY--AQAFSFKYSPRLGT---------PGS 376
           +  +   FI   PG  D+D       + K  +   Q  +F  SP   +         P +
Sbjct: 560 EQYLIPYFISAHPGTRDEDMVNLALWLKKHRFRLDQVQNFYPSPLANSTTMYYTGKKPLA 619

Query: 377 NMLEQ-----VDENVKAERLL 392
            +  +     V +  K  RL 
Sbjct: 620 KIGYKSEDVFVPKGDKQRRLH 640


>gi|297529483|ref|YP_003670758.1| radical SAM protein [Geobacillus sp. C56-T3]
 gi|297252735|gb|ADI26181.1| Radical SAM domain protein [Geobacillus sp. C56-T3]
          Length = 424

 Score = 56.5 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 39/256 (15%), Positives = 87/256 (33%), Gaps = 15/256 (5%)

Query: 106 AGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSI 165
             C+A+    +     P V      +    +   + R  F    V + + +   ++    
Sbjct: 113 LVCLARHLSGDAQSEIPGVLFAEQAKKGEYVHPFMSRDHFD---VPSRHLLPPLYKYPQK 169

Query: 166 VDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR-GIEISRSLSQVVDEARKLIDNGVCE 224
                     +     I  GC   C +C V     G  I  S   V+ + ++L++ G+  
Sbjct: 170 QIDKILGSPQIVGSTEIARGCHHKCLYCSVYAAYGGKVILISEEIVLKDVQQLVEGGMTH 229

Query: 225 ITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL 284
           +T +  +    +  G+         L    SE   L     T       +   ++   +L
Sbjct: 230 LTFIDADFFNAKYHGIK-------ILRKLHSEFPHLTYDFTTRVDHILENKETLREMKEL 282

Query: 285 DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETD 344
              + ++   ++  SD +L ++ +  +  +  + I  +R +   I ++  FI+  P    
Sbjct: 283 G--VKFITSALEFPSDEVLDAVAKETSVSDIEEAISYLREI--GIKLNPTFIMFNPWTKL 338

Query: 345 DDFRATMDLVDKIGYA 360
           +D  A    V +    
Sbjct: 339 EDLSAFRAFVAENQLE 354


>gi|254430613|ref|ZP_05044316.1| radical SAM domain protein [Cyanobium sp. PCC 7001]
 gi|197625066|gb|EDY37625.1| radical SAM domain protein [Cyanobium sp. PCC 7001]
          Length = 901

 Score = 56.5 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 39/235 (16%), Positives = 74/235 (31%), Gaps = 26/235 (11%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGK 238
           + I+ GC + C FC                V++   + +   G  + +LL          
Sbjct: 275 VEIRRGCTRGCRFCQPGMLTRPARDVEPEAVIEAVEQGMRRTGYADFSLLS-----LSCS 329

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
                     +L   L+     V L   +       + +    G        L    ++G
Sbjct: 330 DYLALPAVGVELRNRLA--DQNVSLTLPSQRVDRFDEDIAHILGGTRRA--GLTFAPEAG 385

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRP--DIAISSDFIVGFPGETDDD---FRATMDL 353
           + R+   +N+  T      ++  IR+        +   F++G PGETD D      T   
Sbjct: 386 TQRLRDIVNKGLT---DADLLRGIRTAMASGYRKVKLYFMIGLPGETDADVLGIADTCRR 442

Query: 354 VDKIGYA------QAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQ 402
           + +                ++P+  TP       V       R   L++ LR+ +
Sbjct: 443 LQEQCRDLGRLELNLTISNFTPKPHTPFQ--WHSVSTEEFRRRQALLRQALRQLR 495


>gi|183598967|ref|ZP_02960460.1| hypothetical protein PROSTU_02411 [Providencia stuartii ATCC 25827]
 gi|188021183|gb|EDU59223.1| hypothetical protein PROSTU_02411 [Providencia stuartii ATCC 25827]
          Length = 300

 Score = 56.5 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 34/187 (18%), Positives = 60/187 (32%), Gaps = 10/187 (5%)

Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTF 247
             CTFC V        S     + ++ R            L              E C  
Sbjct: 43  GGCTFCNVSSFSDETQS--TQSISEQIRHQKAKITRASRYLA---YFQAYTSTYAEVCLL 97

Query: 248 SDLLYSLSEIKGLVRLRYT--TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
             L     +   ++ L               L+  + +    + +L L +QS  D+ L  
Sbjct: 98  QQLYEEALKQANIIGLCVGTRPDCVPQDVLSLLSGYREHGYEI-WLELGLQSAHDKTLHR 156

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           +NR H   EY++ + + R +   + + +  I G PGE+      T++ V + G       
Sbjct: 157 INRGHGFAEYQKTVTKARQL--GLKVCTHLICGLPGESTLMNMQTLEKVLECGTDGIKLH 214

Query: 366 KYSPRLG 372
                 G
Sbjct: 215 PLHIVEG 221


>gi|239828227|ref|YP_002950851.1| lipoyl synthase [Geobacillus sp. WCH70]
 gi|259494934|sp|C5D7H5|LIPA_GEOSW RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|239808520|gb|ACS25585.1| lipoic acid synthetase [Geobacillus sp. WCH70]
          Length = 298

 Score = 56.5 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 33/214 (15%), Positives = 74/214 (34%), Gaps = 13/214 (6%)

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           ++V ++ +  +I +    R+     F+ +   C + C FC V      E+     +    
Sbjct: 37  HTVCEEAKCPNIHECWAVRR--TATFMILGNVCTRACRFCAVKTGLPTEL--DWQEPERV 92

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
           A  +    +  + +        R    DG    F++ + ++        +    S    +
Sbjct: 93  AESVRLMNLKHVVVTAV----ARDDLKDGGAAVFAETVRAIRRKNPFTTIEVLPSDMGGV 148

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
            + L         ++ +    V+  +      +  R T     + + R + ++PDI   S
Sbjct: 149 YENLKTLMDARPDILNHNIETVRRLTP----RVRARATYERSLEFLRRAKELQPDIPTKS 204

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
             +VG  GET ++    MD +           +Y
Sbjct: 205 SIMVGL-GETKEEIIEAMDDLRANHVDILTIGQY 237


>gi|256839178|ref|ZP_05544688.1| coproporphyrinogen III oxidase [Parabacteroides sp. D13]
 gi|298374724|ref|ZP_06984682.1| oxygen-independent coproporphyrinogen III oxidase [Bacteroides sp.
           3_1_19]
 gi|256740097|gb|EEU53421.1| coproporphyrinogen III oxidase [Parabacteroides sp. D13]
 gi|298269092|gb|EFI10747.1| oxygen-independent coproporphyrinogen III oxidase [Bacteroides sp.
           3_1_19]
          Length = 375

 Score = 56.5 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 30/198 (15%), Positives = 64/198 (32%), Gaps = 9/198 (4%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C K C +C   +    E+      +    +++            + +    G     ++ 
Sbjct: 11  CAKRCLYCD--FFSNTEMKYKEPYINALIKEMELRKGYIGNEALETIYFGGGTPSQLDEK 68

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPR--DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
            F  +  ++     +      T      DM    +    +       + + VQS     L
Sbjct: 69  DFGKIFEAIYRHFDVAEQMEITLEANPDDMKREYVSLLRNYP--FNRVSMGVQSFHPEDL 126

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIA-ISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           + +NRRH   +  + ++  +     I  IS D I G P +T   +   +    ++     
Sbjct: 127 RFLNRRHDRQQAIKAVELCKEY--GITNISIDLIYGLPNQTQQAWEENLRQAIRLDVPHL 184

Query: 363 FSFKYSPRLGTPGSNMLE 380
            ++      GT    +LE
Sbjct: 185 SAYHLIYEEGTALYKLLE 202


>gi|262196971|ref|YP_003268180.1| radical SAM protein [Haliangium ochraceum DSM 14365]
 gi|262080318|gb|ACY16287.1| Radical SAM domain protein [Haliangium ochraceum DSM 14365]
          Length = 525

 Score = 56.5 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 48/285 (16%), Positives = 98/285 (34%), Gaps = 45/285 (15%)

Query: 96  KEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR--FGKRVVDT- 152
           +     L+V  G +  +        +P  ++VV  +    LP LLE AR    +R ++  
Sbjct: 126 RGPQHPLIVAGGPLTFSNP---APLAPFFDIVVMGEAETTLPALLEEARGMTRERAIEAF 182

Query: 153 -----DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQ-------------EGCDKFCTFCV 194
                 Y      ER+  V    +      + +                 GC + CT+CV
Sbjct: 183 AGRPGYYVPAADGERVPPVARADDALLPARSQIITANTELRSMFLTEAVRGCSRGCTYCV 242

Query: 195 VPY-TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS 253
           +   T G   + +  +V+             + L+G +V          +     D++  
Sbjct: 243 MRRSTNGGMRALAPEKVLAGI----PEHARRVGLVGASVT---------DHPRIVDIVRG 289

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
           +  ++G   +  ++     + D L+            L +     S+ + + + RR +  
Sbjct: 290 V--VEGGREVGISSLRADRLGDELVSLLARGG--YRTLTVAADGASEAMRRRVERRTSEK 345

Query: 314 EYRQIIDRIRSVRPDI-AISSDFIVGFPGETDDDFRATMDLVDKI 357
              +  +  R     +  +    +VG PGETDDD    +    ++
Sbjct: 346 HLLRCAELARD--HGLRTLKIYLMVGVPGETDDDIDELIRFTAEL 388


>gi|187250477|ref|YP_001874959.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Elusimicrobium minutum Pei191]
 gi|186970637|gb|ACC97622.1| Putative oxygen-independent coproporphyrinogen III oxidase
           [Elusimicrobium minutum Pei191]
          Length = 365

 Score = 56.5 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 42/228 (18%), Positives = 78/228 (34%), Gaps = 17/228 (7%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C +C          S S   +    +++  +G        Q +    G      + 
Sbjct: 11  CAQKCFYCAFSSYPDKL-SLSGEYINALIKEM--SGHKNFN--AQTLYIGGGTPSVLSEE 65

Query: 246 TFSDLLYSLSEIKGLVRLRY------TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
               L  ++ E  G V+               +    L+K +G        L + +QS +
Sbjct: 66  NLEKLFKAVEENFGPVKNFLESTFEANPESLTEEKIILLKKYG-----FNRLSMGLQSSN 120

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
           D ILK++ R H    + +     RS+  D  I+ D I G P +  ++F+  +  V  +  
Sbjct: 121 DDILKNLGRIHDRRMFIKSYSDARSMGFD-NINIDLIAGCPSQNLENFKEDISFVLTLNP 179

Query: 360 AQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFND 407
                +      GT         D+ +  E LL     L ++  S  +
Sbjct: 180 EHFSVYGMEISEGTKFFKEGYAPDDALVKEMLLYAHNFLPKRAYSHYE 227


>gi|149926004|ref|ZP_01914267.1| Lipoate synthase [Limnobacter sp. MED105]
 gi|149825292|gb|EDM84503.1| Lipoate synthase [Limnobacter sp. MED105]
          Length = 327

 Score = 56.5 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 78/222 (35%), Gaps = 14/222 (6%)

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
           + +  ++ +    E  S  + G    +G   F+ + + C + C FC V + R       L
Sbjct: 64  KEILREHKLHTVCEEASCPNIGECFGKGTATFMIMGDKCTRRCPFCDVGHGRPD----PL 119

Query: 208 SQV--VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            +   ++ A+ +    +  + +   +    R    DG    F   +    E+    ++  
Sbjct: 120 DENEPLNLAKTIAALRLNYVVITSVD----RDDLRDGGAGHFVACIEKTRELSPNTKIEI 175

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
                 D    L +A G L+   P +       ++R+ K            +++   +  
Sbjct: 176 LVP---DFRGRLDRALGILNAAPPDVMNHNLETTERLYKEARPGSDYKHSLKLLQEFKKA 232

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
            P+    S  +VG  GETD++    M  + +         +Y
Sbjct: 233 HPNTPTKSGIMVGL-GETDEEILQVMRDMREHQVDMITIGQY 273


>gi|123443223|ref|YP_001007197.1| lipoyl synthase [Yersinia enterocolitica subsp. enterocolitica
           8081]
 gi|238790454|ref|ZP_04634224.1| Lipoyl synthase [Yersinia frederiksenii ATCC 33641]
 gi|166230446|sp|A1JPR9|LIPA_YERE8 RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|122090184|emb|CAL13047.1| lipoic acid synthetase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|238721480|gb|EEQ13150.1| Lipoyl synthase [Yersinia frederiksenii ATCC 33641]
          Length = 321

 Score = 56.5 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 44/257 (17%), Positives = 86/257 (33%), Gaps = 17/257 (6%)

Query: 118 LRRSPIVNVVVGPQTYYRLPELLERAR-------FGKRVVDTDYSVEDKFERLSIVDGGY 170
           +   PI  VV   Q   R PE ++           G +       +    E  S  +   
Sbjct: 19  MALIPIKTVVTERQELLRKPEWMKIKLPADSSRIQGIKAAMRKNGLHSVCEEASCPNLSE 78

Query: 171 NRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQ 230
               G   F+ +   C + C FC V    G  ++   ++    A+ + D G+  + +   
Sbjct: 79  CFNHGTATFMILGAICTRRCPFCDV--AHGRPVTPDANEPEKLAQTIKDMGLRYVVITSV 136

Query: 231 NVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY 290
           +    R    DG    F+D + ++      +++       R   D  +          P 
Sbjct: 137 D----RDDLRDGGAQHFADCISAIRAKNPTIKIETLVPDFRGRMDRALDILTVTP---PD 189

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
           +         R+ + +          ++++R +   PDI   S  +VG  GET+ +    
Sbjct: 190 VFNHNLENVPRVYRQVRPGANYEWSLKLLERFKEAHPDIPTKSGLMVGL-GETNAEIVEV 248

Query: 351 MDLVDKIGYAQAFSFKY 367
           M  + + G       +Y
Sbjct: 249 MRDLRRHGVTMLTLGQY 265


>gi|255099850|ref|ZP_05328827.1| putative radical SAM superfamily protein [Clostridium difficile
           QCD-63q42]
          Length = 312

 Score = 56.5 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 36/239 (15%), Positives = 81/239 (33%), Gaps = 35/239 (14%)

Query: 174 RGVTAFLTIQEGCDKFCTFC---VVPYTRGIEISR------SLSQVVDEARKLIDNGVCE 224
              TA++ I E C   C+FC   +   TR  ++SR      S  +++D  +      +  
Sbjct: 22  PPTTAYIMIGEKCINKCSFCSQSIESSTRKDKLSRVIWPEFSKEEILDALKAYKGKNIKR 81

Query: 225 ITL---LGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAH 281
           I +     +  +      ++         +   ++++   +++   S   D     I A 
Sbjct: 82  ICIQSMASEEAHNSVLDFINYISGRIDMPISLSAKLENDEQIKKFFSVGVDKIGIAIDA- 140

Query: 282 GDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPG 341
                            +++ L    + +   E  + I  +    P+  IS+  IVG  G
Sbjct: 141 -----------------ANKELYEKIKGNNYDEKLKFITEMSKSYPN-KISTHIIVGM-G 181

Query: 342 ETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLRE 400
           E+ +D       + +        F ++P  GT    + +         R+  +   + +
Sbjct: 182 ESHEDIYNLYTYLKENDV-MISLFAFTPVRGTKMEKISQ--PSIESYRRVQLMSYMINK 237


>gi|170767801|ref|ZP_02902254.1| lipoic acid synthetase [Escherichia albertii TW07627]
 gi|170123289|gb|EDS92220.1| lipoic acid synthetase [Escherichia albertii TW07627]
          Length = 321

 Score = 56.5 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 32/183 (17%), Positives = 68/183 (37%), Gaps = 12/183 (6%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V    G  I+   ++ +  A+ + D  +  + +   +    R    DG   
Sbjct: 94  CTRRCPFCDV--AHGRPIAPDANEPMKLAQTIADMALRYVVITSVD----RDDLRDGGAQ 147

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAH-GDLDVLMPYLHLPVQSGSDRILK 304
            F+D + ++ E    +++       R   D  +         +  +    V     RI +
Sbjct: 148 HFADCITAIREKSPEIKIETLVPDFRGRMDRALDILTATPPDVFNHNLENV----PRIYR 203

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
            +          ++++R +   P+I   S  +VG  GET+++    M  + + G      
Sbjct: 204 QVRPGADYNWSLKLLERFKEAHPEIPTKSGLMVGL-GETNEEIIEVMRDLRRHGVTMLTL 262

Query: 365 FKY 367
            +Y
Sbjct: 263 GQY 265


>gi|88797931|ref|ZP_01113518.1| hypothetical protein MED297_00805 [Reinekea sp. MED297]
 gi|88779128|gb|EAR10316.1| hypothetical protein MED297_00805 [Reinekea sp. MED297]
          Length = 310

 Score = 56.5 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 38/92 (41%), Gaps = 2/92 (2%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +L L +QS  D  L  +NR HT  +YR  + R R +   + + +  IVG PGE+      
Sbjct: 144 WLELGLQSAHDETLALINRGHTMADYRDAVTRARQL--GLKVCTHLIVGLPGESKIHVLD 201

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +   V   G             GT  +  L Q
Sbjct: 202 SWQQVLDAGVDGVKWHPLHVVKGTQLARQLTQ 233


>gi|257065138|ref|YP_003144810.1| Fe-S oxidoreductase [Slackia heliotrinireducens DSM 20476]
 gi|256792791|gb|ACV23461.1| Fe-S oxidoreductase [Slackia heliotrinireducens DSM 20476]
          Length = 293

 Score = 56.5 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 35/213 (16%), Positives = 71/213 (33%), Gaps = 14/213 (6%)

Query: 167 DGGYNRKRGVTAFLTIQEGCDKF-CTFCVV-PYTRGIEISRSLSQVVDEARKLIDNGVCE 224
               N        L I  GC    C FC +    R    S  +  +  +  +     +  
Sbjct: 6   PVYRNPYWPTWPLLEITAGCTHNKCKFCTMYKGVRFDVRS--IEDIEADLAE-----LRT 58

Query: 225 ITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL 284
           +    + +    G  L         +L  ++E    +   YT     D+ +  ++   +L
Sbjct: 59  MVPHARTIQLLSGNPLALPYSRLKPILEKINEYLPDMEYVYTAGRVTDLRNKTVEQLREL 118

Query: 285 DVL-MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPG-- 341
             L +  + L V+SG D  L  +N+ + A +  +   ++      I     F+ G  G  
Sbjct: 119 KELGLREVSLGVESGDDWTLDRVNKGYHAEDIIEQCGKLTEA--GIDFWMSFLNGVAGRS 176

Query: 342 ETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
            + D    + ++  +       +   +   GTP
Sbjct: 177 HSRDHAIHSAEIFSQCKPMLVGTGGLTLFPGTP 209


>gi|207727761|ref|YP_002256155.1| lipoyl synthase (lipoic acid synthase) (lipoate
           synthase)(lipoyl-acyl-carrier protein synthase)
           [Ralstonia solanacearum MolK2]
 gi|206591002|emb|CAQ56614.1| lipoyl synthase (lipoic acid synthase) (lipoate
           synthase)(lipoyl-acyl-carrier protein synthase) (sulfur
           insertion protein lipa) (lip-syn) [Ralstonia
           solanacearum MolK2]
          Length = 333

 Score = 56.5 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 34/210 (16%), Positives = 70/210 (33%), Gaps = 16/210 (7%)

Query: 161 ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS--QVVDEARKLI 218
           E  S  + G    +G   F+ + + C + C FC V + R       L   +  + A+ + 
Sbjct: 81  EEASCPNIGECFGKGTATFMIMGDKCTRRCPFCDVGHGRPD----PLDTNEPENLAKTIA 136

Query: 219 DNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLI 278
              +  + +   +    R    DG    + D +     +    R+       R   +  +
Sbjct: 137 QLRLNYVVITSVD----RDDLRDGGAQHYVDCISRTRALSPATRIEVLVPDFRGRLEKAL 192

Query: 279 KAH-GDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIV 337
                    +M +    V     R+ K            +++   ++  P+I   S  +V
Sbjct: 193 DILQACPPDVMNHNMETV----PRLYKQARPGADYAHSLKLLKDFKARNPNIPTKSGLMV 248

Query: 338 GFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           G  GETD++    M  + +         +Y
Sbjct: 249 GL-GETDEEILQVMRDMREHDIDMLTIGQY 277


>gi|187778953|ref|ZP_02995426.1| hypothetical protein CLOSPO_02548 [Clostridium sporogenes ATCC
           15579]
 gi|187772578|gb|EDU36380.1| hypothetical protein CLOSPO_02548 [Clostridium sporogenes ATCC
           15579]
          Length = 363

 Score = 56.5 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 38/212 (17%), Positives = 72/212 (33%), Gaps = 15/212 (7%)

Query: 176 VTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVD--EARKLIDNGVCEI-TLLGQNV 232
           +      QEGC   C FC      G        +++D    R+ I+  +  I        
Sbjct: 7   IIPIFVAQEGCPYNCVFCNQHKITGE-----KDEIIDENYVRETIEAYIKTIDRENSTLE 61

Query: 233 NAWRGKGLDGEKCTFSDLLYSLSEI---KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMP 289
            ++ G    G        L  +++    KG +   + ++ P  +   ++           
Sbjct: 62  VSFFGGTFTGIPIERQKSLLKVAKEYKDKGQIDCIHMSTRPDYIDREILDNLKKYS--AD 119

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
            + L VQS  + +L    R H+  E  +    I+       +    ++G PG+T      
Sbjct: 120 IIELGVQSLDEEVLLKSGRGHSVEEVYRASKLIKEY--GFTLGHQIMLGLPGDTFKKDIE 177

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           T++   K+    A  +       TP   ML +
Sbjct: 178 TVEKSLKMKPDIARIYPALVIKDTPMEYMLRK 209


>gi|170582684|ref|XP_001896239.1| lipoic acid synthetase, mitochondrial precursor [Brugia malayi]
 gi|306755875|sp|A8PF69|LIAS_BRUMA RecName: Full=Lipoyl synthase, mitochondrial; AltName: Full=Lipoate
           synthase; Short=LS; Short=Lip-syn; AltName: Full=Lipoic
           acid synthase; Flags: Precursor
 gi|158596584|gb|EDP34906.1| lipoic acid synthetase, mitochondrial precursor, putative [Brugia
           malayi]
          Length = 357

 Score = 56.5 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 32/217 (14%), Positives = 74/217 (34%), Gaps = 26/217 (11%)

Query: 162 RLSIVDGGYNRKRGVTAFLTIQ---EGCDKFCTFCVVPYTRGIEISRSL---SQVVDEAR 215
           R   ++  ++    V +  TI    + C + C FC V  +             + ++ A+
Sbjct: 93  RCPNIEECWSGSNNVPSTATIMLMGDTCTRGCKFCSVKTSLKP----PPLNPEEPINTAK 148

Query: 216 KLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSD 275
            + D G+  + L   +    R    DG     +  +  L       +          +  
Sbjct: 149 AIADWGINYVVLTSVD----RDDIEDGGASHIAATVKHL-------KQECPNILVECLVP 197

Query: 276 CLIKAHGDLDVLMPYLHLPVQSGSDRILKSM----NRRHTAYEYRQIIDRIRSVRPDIAI 331
               +   ++ +            + + +      + R T  +  ++++  +  R DI  
Sbjct: 198 DFRGSLSSVETIASSGLDVYAHNMETVRRLTPWVRDPRATYDQSLKVLEYAKKFRADIVT 257

Query: 332 SSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
            +  ++G  GETD++   T+  + KIG       +Y 
Sbjct: 258 KTSLMLGL-GETDEEVLTTLHDLRKIGVDALTFGQYM 293


>gi|91774168|ref|YP_566860.1| radical SAM family Fe-S protein [Methanococcoides burtonii DSM
           6242]
 gi|91713183|gb|ABE53110.1| Radical SAM family protein [Methanococcoides burtonii DSM 6242]
          Length = 566

 Score = 56.5 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 49/282 (17%), Positives = 98/282 (34%), Gaps = 37/282 (13%)

Query: 184 EGCDK--FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQ-NVNAWRGKGL 240
            GC +   C+FC      G    R ++ V+ E   L D G     +  Q ++ ++  K +
Sbjct: 194 RGCGRKVHCSFC-TERFYGHSDYRPVADVIAEVSSLYDLGARNFRIGRQPDLLSYHAKDI 252

Query: 241 DGE-----KCTFSDLLYSLSEI-KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY---- 290
             +           L   + ++   L  L    ++P  M     ++   L  ++ Y    
Sbjct: 253 GADVLQPSPEILESLYSGIRKVAPELKVLHMDNTNPATMVAYPEQSFEILKTIVKYHTSG 312

Query: 291 --LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV--------RPDIAISSDFIVGFP 340
               L +++    ++ + + +    +   +I  I  V         P++    +F+ G P
Sbjct: 313 DIAALGIETADPAVVSANDLKVHPDDVLDVIKMINDVGSARGSSGLPELLPGLNFVHGLP 372

Query: 341 GETDDDFRATMDLVDKIGYA------QAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCL 394
           GET   F    DL+  I         +    +     GT      + V ++ K   L   
Sbjct: 373 GETRKTFELNYDLLKDI-LDSGLLVRRINIRQVMAFPGTKVYGNDDLVYKH-KKLFLKYK 430

Query: 395 QKKLREQQVSFNDACV--GQIIE-VLIEKHGKEK--GKLVGR 431
           +K  ++  +      V  G ++  V+ E H +        GR
Sbjct: 431 EKIRKDIDLPMLRKIVPIGTVLRDVMCEIHDERSKHDLTFGR 472


>gi|307353479|ref|YP_003894530.1| Radical SAM domain-containing protein [Methanoplanus petrolearius
           DSM 11571]
 gi|307156712|gb|ADN36092.1| Radical SAM domain protein [Methanoplanus petrolearius DSM 11571]
          Length = 598

 Score = 56.5 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 58/307 (18%), Positives = 112/307 (36%), Gaps = 46/307 (14%)

Query: 78  EKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLP 137
           ++  + L   + +K+   +    +L   A C    +GE + R  P ++ V   +    +P
Sbjct: 143 QQHCASLALAKRIKSKFPEI--QILFGGANCFG-TKGEALCRLFPFIDYVCTGEGDEAVP 199

Query: 138 ELLERARFGKRVVDTDYSVE---------------DKFERLSIVDGGYNRKRG------- 175
           +L++       V +    V                D        D     K G       
Sbjct: 200 KLIKTLLNDDPVPEIPGVVSRNSGKTCESGLVKDLDCLPFPDYSDYFDTLKSGRKLTDLD 259

Query: 176 VTAFLTIQEGCDKF----CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQN 231
           +   +    GC       CTFC       +   +S ++V+DE + + DN   +I  +  N
Sbjct: 260 INIPIETSRGCWWGEKKQCTFCGFNPRGMLFRCKSPTRVLDEIQYVQDNYGNKIH-VADN 318

Query: 232 VNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL 291
           + A +          F  LL  L++ KG+       +        L+   G  +     L
Sbjct: 319 IMAQQY---------FQTLLPQLADQKGIKFFWEVKASLTSEQVRLLACAGITE-----L 364

Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351
            + ++S +D +L+ M +        QI+   +     I +S + + GFPGE  +++ A +
Sbjct: 365 QVGIESLNDSVLRLMQKGTKLIHNIQILKWGKQF--GIDVSYNILWGFPGEDPNEYAAMI 422

Query: 352 DLVDKIG 358
             + KI 
Sbjct: 423 QFIPKIR 429


>gi|261211477|ref|ZP_05925765.1| hypothetical protein VCJ_001738 [Vibrio sp. RC341]
 gi|260839432|gb|EEX66058.1| hypothetical protein VCJ_001738 [Vibrio sp. RC341]
          Length = 312

 Score = 56.5 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 33/124 (26%), Positives = 51/124 (41%), Gaps = 12/124 (9%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +L L +Q+  D+ LK +NR H    Y +I  + RS+   I + +  IVG PGE   D  A
Sbjct: 141 WLELGLQTAHDQTLKRINRGHDFACYAEITAKARSL--GIKVCTHLIVGLPGEGRSDNLA 198

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDAC 409
           T+  V K+G             G+  +          KA R   L    +++ VS     
Sbjct: 199 TLQQVLKVGTDGIKLHGLHIVEGSTMA----------KAWRAGRLTVLEQDEYVSIACEM 248

Query: 410 VGQI 413
           +   
Sbjct: 249 IRST 252


>gi|218701434|ref|YP_002409063.1| coproporphyrinogen III oxidase [Escherichia coli IAI39]
 gi|300937091|ref|ZP_07151953.1| oxygen-independent coproporphyrinogen III oxidase [Escherichia coli
           MS 21-1]
 gi|218371420|emb|CAR19253.1| coproporphyrinogen III oxidase, SAM and NAD(P)H dependent,
           oxygen-independent [Escherichia coli IAI39]
 gi|300457823|gb|EFK21316.1| oxygen-independent coproporphyrinogen III oxidase [Escherichia coli
           MS 21-1]
          Length = 457

 Score = 56.5 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 45/269 (16%), Positives = 92/269 (34%), Gaps = 30/269 (11%)

Query: 157 EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS-------LSQ 209
           ED  E+  +       +R ++ ++ I   C K C FC        +  ++         +
Sbjct: 34  EDFGEQAFLQAVARYPERPLSLYVHIPF-CHKLCYFCGCNKIVTRQQHKADQYLDALEQE 92

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE-----IKGLVRLR 264
           +V  A       V ++   G       G      K   S L+  L E         + + 
Sbjct: 93  IVHRAPLFAGRKVSQLHWGG-------GTPTYLNKAQISRLMKLLRENFQFNADAEISIE 145

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
                PR++   ++      D     L + VQ  +  + + +NR         +++  R 
Sbjct: 146 V---DPREIELDVLDHLRAED--FNRLSMGVQDFNKEVQRLVNREQDEEFIFALLNHARE 200

Query: 325 VRPDIAISS-DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQV 382
           +      ++ D I G P +T + F  T+  V ++   +   F Y+       +   ++  
Sbjct: 201 I--GFTSTNIDLIYGLPKQTPESFAFTLKRVAELNPDRLSVFNYAHLPTIFAAQRKIKDA 258

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVG 411
           D     ++L  LQ+ +     S     +G
Sbjct: 259 DLPSPQQKLDILQETIAFLTQSGYQ-FIG 286


>gi|323705470|ref|ZP_08117045.1| Radical SAM domain protein [Thermoanaerobacterium xylanolyticum
           LX-11]
 gi|323535372|gb|EGB25148.1| Radical SAM domain protein [Thermoanaerobacterium xylanolyticum
           LX-11]
          Length = 354

 Score = 56.5 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 35/203 (17%), Positives = 72/203 (35%), Gaps = 19/203 (9%)

Query: 185 GCDKFCTFC----VV---PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG 237
           GC   C FC    +           + R++   +        N   E++  G    ++ G
Sbjct: 15  GCPHKCVFCNQDEITGLKSKVNEEYVERTIEDYLKTI---PKNAHIEVSFYG---GSFTG 68

Query: 238 KGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQS 297
             L+ +K   S +   L  I G +     ++ P  + + ++         +  + L VQS
Sbjct: 69  IPLETQKKFLSIVQKYL--ILGSIDAIRLSTRPDYIDEVILDNLKRYG--VSIIELGVQS 124

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
             + +L   +R H+A +  +  + I+       +    ++G PG+       T D +  +
Sbjct: 125 MDNEVLLKSHRGHSAVDVFRASELIKEY--GFTLGLQIMIGLPGDNRQKLLETADKIISL 182

Query: 358 GYAQAFSFKYSPRLGTPGSNMLE 380
             A    +      GT    M +
Sbjct: 183 RPAFVRIYPTLVLKGTYLEKMYK 205


>gi|242129443|gb|ACS83777.1| coproporphyrinogen III oxidase [Nonomuraea sp. Bp3714-39]
          Length = 403

 Score = 56.5 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 36/202 (17%), Positives = 65/202 (32%), Gaps = 21/202 (10%)

Query: 186 CDKFCTFC----VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL- 240
           C+  C FC     VP        +S  +V       ++    +I +    +       + 
Sbjct: 14  CNSKCHFCDWVVQVPVRDLRLGEQSPGRV-----AYLEAIRTQIRVQAPALREHYHPDIV 68

Query: 241 -DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL-------MPYLH 292
             G         + +  + G +   +  S  R+ +        D D L          + 
Sbjct: 69  YWGGGTASILGPHEIESLYGTLSAEFDLSTVREATIEGSPESLDRDKLRLLRELGFNRIS 128

Query: 293 LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA-ISSDFIVGFPGETDDDFRATM 351
           + VQS  D  L+ + R H A +    +            I+ D IVGFPG+T  +   ++
Sbjct: 129 IGVQSFDDARLRRLGRAHAADQALTAVQDAHEA--GFTNINIDLIVGFPGQTGQEVADSV 186

Query: 352 DLVDKIGYAQAFSFKYSPRLGT 373
                +       + Y    GT
Sbjct: 187 RTALTLPINHFSIYPYRASPGT 208


>gi|288942245|ref|YP_003444485.1| lipoic acid synthetase [Allochromatium vinosum DSM 180]
 gi|288897617|gb|ADC63453.1| lipoic acid synthetase [Allochromatium vinosum DSM 180]
          Length = 324

 Score = 56.5 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 32/207 (15%), Positives = 66/207 (31%), Gaps = 9/207 (4%)

Query: 161 ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN 220
           E     + G     G   F+ + + C + C FC V    G        +    A  +   
Sbjct: 72  EEAQCPNLGECFAHGTATFMILGDVCTRRCPFCDV--AHGRPQPPDPDEPAHLAESIALL 129

Query: 221 GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKA 280
           G+  + +   +    R    DG    F+D L ++       RL       R      +  
Sbjct: 130 GLRYVVITSVD----RDDLRDGGAGHFADCLRAIRARHPDTRLECLVPDFRGRESVALDQ 185

Query: 281 HGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFP 340
             + D +    +  +++   R+ +            +++   ++  P +   S  ++G  
Sbjct: 186 F-EGDAVPDVFNHNLETV-PRLYREARPGADYAGSLKLLQAFKARHPSVPTKSGIMLGL- 242

Query: 341 GETDDDFRATMDLVDKIGYAQAFSFKY 367
           GET D+    M  +           +Y
Sbjct: 243 GETQDEVLDLMRDLRAHDCDMLTLGQY 269


>gi|159030192|emb|CAO91084.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 390

 Score = 56.5 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 39/199 (19%), Positives = 72/199 (36%), Gaps = 17/199 (8%)

Query: 186 CDKFCTFCVVP-YTRGIEISR-SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
           C + C +C  P +  G   +  +   VV+    L +        L Q           G 
Sbjct: 17  CRRRCFYCDFPIFVVGNHTNPATFPPVVEYVEILQEEIS-----LSQETGKPLETIFFGG 71

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY-------LHLPVQ 296
                  +  L  I   +  ++  +   ++S  +  A   L+ L  Y       + L VQ
Sbjct: 72  GTPSLLPVELLGAILDTLAKKFDFAADIEISMEIDPATFSLEQLQGYLSAGVNRVSLGVQ 131

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS-DFIVGFPGETDDDFRATMDLVD 355
           +  + +L+   R HT  +  Q ++ IR +   I   S D I G P +T  D+  +++   
Sbjct: 132 AFQEPLLQVSGRSHTVKDIYQAVELIRGL--GIVNYSLDLISGLPQQTLTDWENSLEKAI 189

Query: 356 KIGYAQAFSFKYSPRLGTP 374
           ++  A    +       TP
Sbjct: 190 ELQPAHLSCYDLVLEAVTP 208


>gi|330469418|ref|YP_004407161.1| lipoyl synthase [Verrucosispora maris AB-18-032]
 gi|328812389|gb|AEB46561.1| lipoyl synthase [Verrucosispora maris AB-18-032]
          Length = 329

 Score = 56.5 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 35/216 (16%), Positives = 71/216 (32%), Gaps = 18/216 (8%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC +   +  E      +    A  ++  G+   T+ G      R    DG   
Sbjct: 97  CTRRCDFCQIDTGKPAEF--DADEPRRVAESVVSMGLRYATITGV----ARDDLPDGGAW 150

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
            +++ +  +  ++    +         + + L +       ++ +    V     RI K 
Sbjct: 151 LYAETVRQIHALQPGCGVELLIPDFNAVPEQLAEVFSARPEVLAHNVETV----PRIFKR 206

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           +           +I + R+    +   S+ I+G  GE   +    +  +   G       
Sbjct: 207 IRPAFRYERSLDVIRQARAA--GLVTKSNLILGM-GEDRAEISQALRDLHDAGCELITIT 263

Query: 366 KYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQ 401
           +Y  R  TP       V+  VK E  + L  +  E 
Sbjct: 264 QYL-RP-TP---RHHPVERWVKPEEFVELSAEAEEI 294


>gi|300705322|ref|YP_003746925.1| lipoyl synthase [Ralstonia solanacearum CFBP2957]
 gi|299072986|emb|CBJ44343.1| Lipoyl synthase (Lipoic acid synthase or Lipoate synthase, Sulfur
           insertion protein lipA (Lip-syn, LS) [Ralstonia
           solanacearum CFBP2957]
          Length = 333

 Score = 56.5 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 34/210 (16%), Positives = 70/210 (33%), Gaps = 16/210 (7%)

Query: 161 ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS--QVVDEARKLI 218
           E  S  + G    +G   F+ + + C + C FC V + R       L   +  + A+ + 
Sbjct: 81  EEASCPNIGECFGKGTATFMIMGDKCTRRCPFCDVGHGRPD----PLDANEPENLAKTIA 136

Query: 219 DNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLI 278
              +  + +   +    R    DG    + D +     +    R+       R   +  +
Sbjct: 137 QLRLNYVVITSVD----RDDLRDGGAQHYVDCISRTRALSPATRIEVLVPDFRGRLEKAL 192

Query: 279 KAH-GDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIV 337
                    +M +    V     R+ K            +++   ++  P+I   S  +V
Sbjct: 193 DILQACPPDVMNHNMETV----PRLYKQARPGADYAHSLKLLKDFKARNPNIPTKSGLMV 248

Query: 338 GFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           G  GETD++    M  + +         +Y
Sbjct: 249 GL-GETDEEILQVMRDMREHDIDMLTIGQY 277


>gi|187777433|ref|ZP_02993906.1| hypothetical protein CLOSPO_01000 [Clostridium sporogenes ATCC
           15579]
 gi|187774361|gb|EDU38163.1| hypothetical protein CLOSPO_01000 [Clostridium sporogenes ATCC
           15579]
          Length = 352

 Score = 56.5 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 32/238 (13%), Positives = 77/238 (32%), Gaps = 21/238 (8%)

Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI-EISR-SL 207
           +D D       +        Y+ K  +   +     C   C +C +       E  R S 
Sbjct: 30  IDKDSKKYLISKSHETRLKYYDNKVFLRGLIEFTNYCKNSCLYCGISCRNNNAERYRLSK 89

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
            ++++  RK    G     L G     +    +     +  +L    +    +    Y+T
Sbjct: 90  EEILNCCRKGYSLGYKTFVLQGGEDPYYTDDKIINIIKSIKNLFPDCAITLSMGEKDYST 149

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
                      +A  D         L  ++ S  + + ++   +    R+ +  ++ +  
Sbjct: 150 YKK------FYEAGADR------YLLRHETASKSLYEELHPDMSFENRRRCLKNLKEI-- 195

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT-----PGSNMLE 380
              I + F++G P +T++D+   +  + ++         + P   T     P   + +
Sbjct: 196 GYQIGAGFMIGLPNQTNEDYVNDLVFLKELKPHMVGIGPFIPHKDTVLKDQPAGTLED 253


>gi|156937750|ref|YP_001435546.1| radical SAM domain-containing protein [Ignicoccus hospitalis
           KIN4/I]
 gi|156566734|gb|ABU82139.1| Radical SAM domain protein [Ignicoccus hospitalis KIN4/I]
          Length = 496

 Score = 56.5 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 40/310 (12%), Positives = 99/310 (31%), Gaps = 44/310 (14%)

Query: 116 EILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRG 175
           EI   S +  +  G    +   E +      +         E+       V   ++   G
Sbjct: 137 EIAVPSVVDALFSGDWESFESLEFVVSGEDDEGKRAYANVAEEPLLSTQFVPLDFDPPWG 196

Query: 176 VTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV---VDEARKLIDNGVCEITLLGQNV 232
               + +  GC   C FC+  +       R + QV   +   R+  +       ++  ++
Sbjct: 197 KGFLVEVTRGCPWKCRFCLEGWVTKPFRQRDVEQVKRALANVRRPFEK------VITISL 250

Query: 233 NAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLH 292
           +    + +D    +  +L     +++G       +     +++ L++    L      + 
Sbjct: 251 SLGNYESVDEYLDSLIELKRK-RKVQG----SVPSLRLETVTEELLEKVKGLGQ--RTVT 303

Query: 293 LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGE----TDDDFR 348
           +  ++      + + + +    +++ +  I  +  ++ +    +V  PGE    T+ D  
Sbjct: 304 VAPETFDPLKARVLGKGYAPEFFKEKVSIINKL--NLKLKVYMMV-VPGEPARVTEGDAE 360

Query: 349 ATMDLVDKIGYAQAFSFKYSPRLGTP--GSNMLEQVDEN----------------VKAER 390
              +L      +        P+  TP  G+ +  + +E                 VK  R
Sbjct: 361 VLKEL---APGSHVSVNPLVPKPWTPLQGAPIPGEREERALSVFAEKLRYVDLYPVKWAR 417

Query: 391 LLCLQKKLRE 400
           L       R 
Sbjct: 418 LQAALGLARR 427


>gi|153810163|ref|ZP_01962831.1| hypothetical protein RUMOBE_00544 [Ruminococcus obeum ATCC 29174]
 gi|149833342|gb|EDM88423.1| hypothetical protein RUMOBE_00544 [Ruminococcus obeum ATCC 29174]
          Length = 516

 Score = 56.5 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 49/261 (18%), Positives = 81/261 (31%), Gaps = 42/261 (16%)

Query: 173 KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLG--- 229
           + G + ++ I   C   C +C          S  L Q  +   + ++    EI  +    
Sbjct: 191 ENGYSLYVGIPF-CPSICLYCSFS-------SYPLKQWKNRVNQYLEALCKEIKEVAAIM 242

Query: 230 -------QNVNAWRGKGLDGEKCTFSDLLYSLSE---IKGLVRLRYTTSHPRDMSDCLIK 279
                    V    G     E      LL +L E    + L         P  ++   + 
Sbjct: 243 KAKGRKLDTVYIGGGTPTTLEPEQLKVLLDALMENFCCENLAEFTIEAGRPDSITREKLM 302

Query: 280 AHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGF 339
              +  +    + +  Q+ +   L  + RRHT  E +Q     R    D  I+ D IVG 
Sbjct: 303 MIRNYPI--TRISVNPQTMNQETLDIIGRRHTVEETKQAFMLARECGFD-NINMDLIVGL 359

Query: 340 PGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK-AERLLCLQKKL 398
           PGE       T++ V  +                            VK A RL   + K 
Sbjct: 360 PGEDKIMVENTLNEVKALAPDSITVH-----------------SLAVKRAARLNIFKDKY 402

Query: 399 REQQVSFNDACVGQIIEVLIE 419
           +E     N   +   ++V  E
Sbjct: 403 QEMTFENNQEIMDMTMKVAYE 423


>gi|134094296|ref|YP_001099371.1| hypothetical protein HEAR1065 [Herminiimonas arsenicoxydans]
 gi|133738199|emb|CAL61244.1| putative Fe-S oxidoreductase [Herminiimonas arsenicoxydans]
          Length = 763

 Score = 56.5 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 72/224 (32%), Gaps = 34/224 (15%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEAR--KLIDNGVCEIT--LLGQNVNA 234
           + I  GC   CTFC +    G  I SRS   ++ E    +    G       L G   N 
Sbjct: 394 VNIMRGCFGGCTFCSITEHEGRIIQSRSEPSILREIELIRDKTKGFTGTISDLGGPTANM 453

Query: 235 WR----------------------GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
           +R                         L  +      L      I G+ ++  ++    D
Sbjct: 454 YRLACKDKRIEESCRRLSCVYPSICSNLGTDHSKLIQLYRKARAIPGIKKILVSSGLRYD 513

Query: 273 MSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRRHTAYE--YRQIIDRI-RSVRP 327
           ++    +   +L    +   L +  +   +  L  M +        ++++ ++  +    
Sbjct: 514 LAVRSPEYVKELVTHHIGGLLKIAPEHSEEGPLSKMMKPGMGAYDKFKELFEKYSKEAGK 573

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDK--IGYAQAFSFKYSP 369
           +  +   FI   PG TD+D       + K      Q  +F  +P
Sbjct: 574 EQYLIPYFIAAHPGTTDEDMLNLALWLKKNNFRLDQVQTFMPTP 617


>gi|114776348|ref|ZP_01451393.1| coproporphyrinogen III oxidase [Mariprofundus ferrooxydans PV-1]
 gi|114553178|gb|EAU55576.1| coproporphyrinogen III oxidase [Mariprofundus ferrooxydans PV-1]
          Length = 479

 Score = 56.5 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 28/200 (14%), Positives = 78/200 (39%), Gaps = 20/200 (10%)

Query: 186 CDKFCTFCVVPYTRGIEISRS---LSQVVDEARKLID-----NGVCEITLLGQ-NVNAWR 236
           C+  C +C        +  R+   L  ++ E  ++ D     +G   +  + Q +     
Sbjct: 75  CNTVCYYCGCSKIVTKQYHRAEPYLELLLKEIDRVADCLKEADGTDCMRPVTQLHFGGGT 134

Query: 237 GKGLDGEKCT-----FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL 291
              ++ ++         +    +++ +G   +        + +  +++  G     +  +
Sbjct: 135 PTFMNNDQMRTIMAKLRERFNFVAKDEGEFSIEIDPRECDEDTVRVLQEIG-----LNRM 189

Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351
            + VQ     + K++NR  +  E  ++++  R+   + +++ D + G P +T D F  T+
Sbjct: 190 SMGVQDFDPIVQKAVNRIQSKEETLRVLNEARAHGFE-SMNIDLMYGLPHQTVDTFNTTL 248

Query: 352 DLVDKIGYAQAFSFKYSPRL 371
           D + +    +   F Y+   
Sbjct: 249 DTIIEFSPDRIALFNYAHLP 268


>gi|260903871|ref|ZP_05912193.1| coproporphyrinogen III oxidase [Brevibacterium linens BL2]
          Length = 410

 Score = 56.5 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 75/221 (33%), Gaps = 27/221 (12%)

Query: 174 RGVTAFLTIQEGCDKFCTFC----VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLG 229
           RG++ ++ +   C   C +C          G   SR          + +D  V  +   G
Sbjct: 27  RGLSLYVHVPY-CRVRCGYCDFNTYTAEDLGPGASR--DDYRSNLSRELDLSVRVLAEAG 83

Query: 230 QNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMP 289
                       G   T       L+ +   +R R+  +   +++        + D L P
Sbjct: 84  AGDREVTTIFFGGGTPTM-LAAEVLAGVMDDIRDRFRLAPDVEVTTE-----ANPDTLDP 137

Query: 290 YL------------HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIV 337
                          L +QS    +L +++R H   +   +   I+     + +S D I 
Sbjct: 138 AYIATLAAAGFTRISLGMQSAVPHVLATLDRTHDPAKIPDVARWIKEA--GLELSLDLIY 195

Query: 338 GFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           G PGE+ DD+R ++++          ++      GT    M
Sbjct: 196 GTPGESIDDWRRSLEVALSNDVDHISAYSLIVEPGTKMGAM 236


>gi|317500365|ref|ZP_07958589.1| radical SAM domain-containing protein [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|316898120|gb|EFV20167.1| radical SAM domain-containing protein [Lachnospiraceae bacterium
           8_1_57FAA]
          Length = 629

 Score = 56.5 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 41/311 (13%), Positives = 91/311 (29%), Gaps = 47/311 (15%)

Query: 113 EGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFE--RLSIVDGGY 170
             +    +    +   G +      E L   +       +   ++D ++   +      Y
Sbjct: 216 YAKSFYTQYLNTDAFSGKRLAEPYSEHLYVIQNPPSKPLSVTEMDDIYDLPYMRTYHPSY 275

Query: 171 NRKRGVTAFLTI------QEGCDKFCTFCVVPYTRGIEIS-RSLSQVVDEARKLIDNGVC 223
             K G+ A   I        GC   C+FC + + +G  +  RS   ++ EA ++++    
Sbjct: 276 KAKGGIPAISEIRFSLISNRGCFGGCSFCALTFHQGRIVQVRSHESLIKEAEQMVEEKDF 335

Query: 224 EITL-------------------------LGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258
           +  +                           Q +     K +D +   +  LL  L +I 
Sbjct: 336 KGYIHDVGGPTANFRHPSCEKQLRHGVCATKQCLFPAPCKNIDADHSDYVALLRKLRKIP 395

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQ------SGSDRILKSMNRRHTA 312
            + ++   +         L          +   H+  Q        S  +L  M +    
Sbjct: 396 KVKKVFIRS--GIRFDYLLADKKNTFLKELCQYHVSGQLKVAPEHISAPVLSLMGKPEHR 453

Query: 313 YEYRQIIDRIRSVRPDIA----ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
             Y +   + + +   +     +    +   PG T  +     +    +GY       + 
Sbjct: 454 -IYEEFTRQFKKMNERLGMDQYLVPYLMSSHPGSTLKEAVELAEYCRDLGYMPEQVQDFY 512

Query: 369 PRLGTPGSNML 379
           P   T  + M 
Sbjct: 513 PTPSTLSTCMY 523


>gi|217970434|ref|YP_002355668.1| hypothetical protein Tmz1t_2022 [Thauera sp. MZ1T]
 gi|217507761|gb|ACK54772.1| conserved hypothetical protein [Thauera sp. MZ1T]
          Length = 338

 Score = 56.5 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 44/288 (15%), Positives = 87/288 (30%), Gaps = 28/288 (9%)

Query: 149 VVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEG--CDKF--------CTFCVVP 196
            VD  ++V    ER   +  D    R  G    +++  G  C           CTFC   
Sbjct: 19  PVDEPHAVSPFGERRYNAWNDHVKRRWGGRVQKVSVAAGFTCPNRDGTLGSGGCTFCNNA 78

Query: 197 YTRGIE--ISRSLSQVVDEARKLIDNGVC-EITLLGQNVNAWRGKGLDGEKCTFSDLLYS 253
                       + + +D   + +D         +             GE     +   +
Sbjct: 79  GFTPGYLDRRDPIGEQIDAGLRFLDRRYPGTARFIA---YFQTYSNTYGEFARLRESYEA 135

Query: 254 LSEIKGLVRLRYT--TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
                 +  L          D+    +       ++   L + V+S  D +L+ +NR H 
Sbjct: 136 ALAHPRICGLAIGTRPDCLPDVVLDYLAELAREHIV--ELEIGVESCDDEVLRRINRGHD 193

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
                + I   R+    + +++  I+G PGET          +  +  A     +     
Sbjct: 194 FACSEEAIR--RAAARGLGVTAHLILGLPGETRAGMLEAARRLSALPVAALKLHQLQLVR 251

Query: 372 GTPGSNMLEQVDENV----KAERLLCLQKKLREQQVSFNDACVGQIIE 415
           GT  +   E+   +V    + E +  L   +     +     +G  + 
Sbjct: 252 GTAMARDWERDPASVPLLAEDEYIALLADFVERLAPTILLQRLGSEVP 299


>gi|4895120|gb|AAD32727.1| MmcD [Streptomyces lavendulae]
          Length = 611

 Score = 56.5 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 49/304 (16%), Positives = 98/304 (32%), Gaps = 38/304 (12%)

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
           LG    L     +E     +   G      G ++LR +P  +VV   +    + +L++R 
Sbjct: 102 LGSCLTLCRMLREELPGTTIACGGPAGTFAGLDVLRNNPWTDVVAVGEGEPTILDLVQRL 161

Query: 144 ----------------RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT---AFLTIQE 184
                             G    +    +    E L        R+ G       ++   
Sbjct: 162 YLKEPLSACKGICYRDEDGTPRQNPARPLIHNLEDLPFPARDQLRQHGDKLEYVRVSTSR 221

Query: 185 GCDKFCTFCVVPYTRGIE------ISRSLSQVVDEARKLIDNG-VCEITLLGQNVNAWRG 237
           GC   C FC  P+ +           R   Q+VDE  ++++         +         
Sbjct: 222 GCVANCAFCSAPHLKNRVQAGKAWRGRGPEQIVDEVAEIVERHQFRTFDFVDSTF----- 276

Query: 238 KGLDGEKCTFSDLLYSLSEI-KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLM----PYLH 292
           +  DG +     +    + I +  + + Y      +      + H  LD+L+      ++
Sbjct: 277 EDPDGGRVGKKRVAAIANGILERGLDIYYNVCMRAENWHDTPEDHALLDLLVASGLEKVN 336

Query: 293 LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352
           + +++G+   L    +R T  +   II  +R     I ++  FI   P  T +       
Sbjct: 337 VGIEAGTAEELLLWEKRATVEDNVTIIRMLRE--HGIYLAMGFIPFHPYATLETIVTNAA 394

Query: 353 LVDK 356
            +  
Sbjct: 395 FLRD 398


>gi|330506921|ref|YP_004383349.1| radical SAM domain-containing protein [Methanosaeta concilii GP-6]
 gi|328927729|gb|AEB67531.1| radical SAM domain protein [Methanosaeta concilii GP-6]
          Length = 461

 Score = 56.5 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 28/244 (11%), Positives = 80/244 (32%), Gaps = 21/244 (8%)

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
           FG+++ D  +        +  ++  +N K  +   L    GC   C FC  P        
Sbjct: 139 FGRQIKDVIHPP-----LIEYLNTPFNIKVNIYGVLFTTRGCPVGCKFCQTPVFCNKPNI 193

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
            SL  +          G+  + +  +N            +    +++  L +   +    
Sbjct: 194 ISLESIERVLAYYKKMGINVVIIEDENFGC--------NRRHADEVVKLLDKYGMVWGCM 245

Query: 265 YTTSHPRDMSDCLIKA-HGDLDVLMPYLH--LPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
               + R   D    A   +   +  +    + +++     L  + ++    +  + +  
Sbjct: 246 ARADYLRKKIDDWADARMKNGKQVSGFAGAAIGIENLHQERLDEIKKKEGTEDILETLRM 305

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +++    +     +++GF  +T +  +  +  +  +          +P   TP   +  +
Sbjct: 306 LQAR--GLGTIGYYMIGFEEDTKESLKVDIKKLAALKLDITQICVITPLPQTP---LWRE 360

Query: 382 VDEN 385
           ++E 
Sbjct: 361 IEEK 364


>gi|323498037|ref|ZP_08103045.1| putative Fe-S oxidoreductase [Vibrio sinaloensis DSM 21326]
 gi|323316913|gb|EGA69916.1| putative Fe-S oxidoreductase [Vibrio sinaloensis DSM 21326]
          Length = 314

 Score = 56.5 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 47/232 (20%), Positives = 80/232 (34%), Gaps = 23/232 (9%)

Query: 181 TIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL 240
           TI  G    CTFC V      E+   +  + D+ +            L            
Sbjct: 39  TIGRG---GCTFCNVASFADEEV--QIKSIHDQLKDRAGEIQRAKKYLA---YFQAYTST 90

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV--LMPYLHLPVQSG 298
             E     ++     +   +V L    + P  + D +++            +L L +Q+ 
Sbjct: 91  YAEVQVLKNMYEEALKAADIVGL-CVGTRPDCVPDAVLELLSGYVKQGFEIWLELGLQTA 149

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           +D  LK +NR H    Y QI  R R++   I + +  IVG P E+  D   T+  V ++G
Sbjct: 150 NDDTLKRINRGHDFACYAQITQRARAL--GIKVCTHLIVGLPKESRTDNIDTLTKVLEVG 207

Query: 359 YAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACV 410
                        G+  +          KA +   LQ    E+ V+     +
Sbjct: 208 TDGIKLHGLHIVEGSTMA----------KAWKAGRLQAPELEEYVAIASEMI 249


>gi|262039680|ref|ZP_06012969.1| oxygen-independent coproporphyrinogen III oxidase 2 [Leptotrichia
           goodfellowii F0264]
 gi|261746297|gb|EEY33847.1| oxygen-independent coproporphyrinogen III oxidase 2 [Leptotrichia
           goodfellowii F0264]
          Length = 481

 Score = 56.5 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 58/345 (16%), Positives = 119/345 (34%), Gaps = 26/345 (7%)

Query: 37  NVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG-----RIRNLK 91
           N         +   + Y+ ++   +  + +    ++ E         +      R+R  K
Sbjct: 9   NENKLEEFVRVLLPEHYDILDGNSEQKIYI----NVTENLENIEVETISGDNKIRLRYEK 64

Query: 92  NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVD 151
             +       ++     + +  G+E   +   +  V   +   R  ++       + ++ 
Sbjct: 65  IGQKYSDQGEVMAKTS-LMKLFGKEKDYKWGTLIGVRPTKIVGRFLKMGLSYEKIREILK 123

Query: 152 TDYSVEDKFERLSI----VDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP--YTRGIEISR 205
             Y V D+   L I        Y  K  +  ++ I   C   CT+C  P    +G    R
Sbjct: 124 NIYLVSDEKVNLLINIVKRQIPYLDKETIGIYIGIAY-CPTKCTYCSFPAYLLKGKYAER 182

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG-----EKCTFSDLLYSLSEIKGL 260
                    +++ + G     L  +    + G G        E  T  D + S  E+  L
Sbjct: 183 YDEYYESLLKEIKEIGTLTKNLDLKISTIYIGGGTPSILSAKEIETLLDTVKSSFELGNL 242

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
               +       +++  ++        +  + +  QS ++R LK +NR H   ++  I D
Sbjct: 243 KEFTFEAGRIDTLNEKKLEIIKKSG--VNKISINPQSFNERTLKLVNRYHNRKQFDSIYD 300

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
             + +   + I+ D I+G PGET +D   T+D V K         
Sbjct: 301 IAKRI--GLEINMDLILGLPGETTEDILYTLDEVKKYNPENLTVH 343


>gi|256375316|ref|YP_003098976.1| Radical SAM domain protein [Actinosynnema mirum DSM 43827]
 gi|255919619|gb|ACU35130.1| Radical SAM domain protein [Actinosynnema mirum DSM 43827]
          Length = 655

 Score = 56.5 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 47/303 (15%), Positives = 93/303 (30%), Gaps = 34/303 (11%)

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
           F +  +D D     K   + + +  + R       + I  GC + C FC           
Sbjct: 238 FKRTTMDLDAWPYPKQPLVPLAESVHERMS-----VEIFRGCTRGCRFCQAGMITRPVRE 292

Query: 205 RSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           RS+  +    ++ +   G  E+ LL   +++     +       +D             L
Sbjct: 293 RSIEGIGAMVQRGLAATGFEEVGLLS--LSSADHSEIAEVTKGLADRYE-----GTNTSL 345

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
              ++     +  L             L    + GS+RI + +N+  +  +  + +    
Sbjct: 346 SLPSTRVDAFNIDLANELSRNGR-RSGLTFAPEGGSERIRRVINKMVSEEDLIRTVSAAF 404

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI---------GYAQAFSF---KYSPRL 371
           +      +   F+ G P ETDDD     ++   +               +     + P+ 
Sbjct: 405 AAGWR-QVKLYFMCGLPTETDDDVLQIAEMAKNVIRAGREASGRKDVRCTISIGGFVPKP 463

Query: 372 GTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQI----IEVLIEKHGKEKGK 427
            TP      Q D      RL  L++ +           +G         LIE       +
Sbjct: 464 HTP-FQWAGQCDPETVDRRLRKLREAVN--SDRNLGRNIGMRYHDGQPSLIEGLLSRGDR 520

Query: 428 LVG 430
            +G
Sbjct: 521 RIG 523


>gi|120555285|ref|YP_959636.1| lipoyl synthase [Marinobacter aquaeolei VT8]
 gi|171769190|sp|A1U380|LIPA_MARAV RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|120325134|gb|ABM19449.1| lipoic acid synthetase [Marinobacter aquaeolei VT8]
          Length = 348

 Score = 56.5 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 31/220 (14%), Positives = 74/220 (33%), Gaps = 17/220 (7%)

Query: 152 TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVV 211
           T++ +    +     + G     G    + +   C + C FC V             +  
Sbjct: 65  TEHRLSTVCQESHCPNIGECWTNGTATIMVMGSVCTRACKFCAVDTGNPKGW-LDPEEPE 123

Query: 212 DEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPR 271
           + A+ +   G+  I L   +    R    DG    ++  + ++       + R       
Sbjct: 124 NTAKSVELMGLRYIVLTSVD----RDDLPDGGAAHYAACVSAI-------KQRTPEVAVE 172

Query: 272 DMSDCLIKAHGDLDVLMPYLHLPV----QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
            ++        D++ ++           ++      +  + R    +   ++   +  RP
Sbjct: 173 ALTPDFDAVMSDVEKVVDSGLDVFAQNVETVKRLTSRVRDPRAGYEKTLSVLAHAKKHRP 232

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           D+   +  ++G  GET+++   TMD +  IG       +Y
Sbjct: 233 DVLTKTSLMLGL-GETEEEILETMDDLRAIGVDILTLGQY 271


>gi|260890330|ref|ZP_05901593.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Leptotrichia hofstadii F0254]
 gi|260859950|gb|EEX74450.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Leptotrichia hofstadii F0254]
          Length = 454

 Score = 56.5 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 40/259 (15%), Positives = 91/259 (35%), Gaps = 31/259 (11%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           CDK C+FC        +I   L    +      +       +  + +N     G      
Sbjct: 73  CDKICSFC---NLNRQQIDNDLEDYTNFLVSEFEKYGKTPYMKSKKINVIFFGGGTPTIY 129

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL-------MPYLHLPVQSG 298
               L   L  I       +T +   + +      + +   +       +  L + +Q+ 
Sbjct: 130 KEHQLERILKAI----NDNFTLTDDCEFTLETTLHNLNPKKIKILEKGGVNRLSVGIQTF 185

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           SDR    +NR  +  E  + +  ++     + + +D I  +P ET ++      +V ++ 
Sbjct: 186 SDRGRNILNRTFSKEETVKRLRNLKESFSGM-VCTDIIYNYPDETVEEVLEDARIVKELK 244

Query: 359 YAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLL---CLQKKLREQQVSFNDACV-GQII 414
                 +      G+       Q+ ++++   L     L+K   E   +F  + + G   
Sbjct: 245 IDSTSFYSLMIYEGS-------QMSKDIRNNTLELNYELEKDF-ELHDAFLKSMLEGGEY 296

Query: 415 EVL----IEKHGKEKGKLV 429
           EV+    I + G+++ + +
Sbjct: 297 EVMEHTKIVRKGRDEYRYI 315


>gi|312880212|ref|ZP_07740012.1| Radical SAM domain protein [Aminomonas paucivorans DSM 12260]
 gi|310783503|gb|EFQ23901.1| Radical SAM domain protein [Aminomonas paucivorans DSM 12260]
          Length = 514

 Score = 56.5 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 41/230 (17%), Positives = 76/230 (33%), Gaps = 21/230 (9%)

Query: 173 KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLID-NGVCEITLLGQN 231
             G T  + +Q GC + C FC +P            + +    K        ++ L+   
Sbjct: 217 TFGKTLLVELQRGCRRGCRFCTLPRCFTPLRRLPFPEALSLLEKAARGTSFEQVGLITPE 276

Query: 232 VNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL 291
                     G+      LL  L+ +    R   + +  R  S                L
Sbjct: 277 A---------GDYPEIRGLLERLTAL----RKSVSFASLRLDSLDAFMVDSLHRGGRTAL 323

Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA-- 349
            L  ++G++ + +S  +  T     Q   R+ + R        F++G PGE ++D     
Sbjct: 324 TLAPEAGTEALRRSCGKPFTDELILQK-ARLAAERGLRQAKLYFMLGLPGEEEEDVAGMA 382

Query: 350 --TMDLVDKIGYA-QAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQK 396
             T  L+ +   +       + P+ GTP       +   V   R   L++
Sbjct: 383 SLTESLLQETRLSLVLSVNPFVPKPGTPWGE-EAFLSAEVYERRTSFLRE 431


>gi|327534928|gb|AEA93762.1| coproporphyrinogen dehydrogenase [Enterococcus faecalis OG1RF]
          Length = 394

 Score = 56.5 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 49/254 (19%), Positives = 98/254 (38%), Gaps = 28/254 (11%)

Query: 177 TAFLTIQEGCDKFCTFCVV--PYTRGIEISRSLSQVVDEARKLI----DNGVCEITLLGQ 230
           +A++ I   C+  C +C     +  G  +   +  ++ E +       +  +  I + G 
Sbjct: 17  SAYIHIPF-CEHICYYCDFNKVFLEGQPVDEYIQSLLKEIQLTQALYPEQEMKTIYIGGG 75

Query: 231 NVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT-SHPRDMSDCLIKAHGDLDVLMP 289
              +   K LD        +   L       R  +T  ++P D++   ++   +    + 
Sbjct: 76  TPTSLSAKQLD---VLLKGVRKQL---TFDDRNEFTVEANPGDLTQEKLQVMKNYG--VN 127

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI-RSVRPDIAISSDFIVGFPGETDDDFR 348
            L + VQ+  DR+LK + R+HTA +  + +  + +    +++I  D I   PG+T + FR
Sbjct: 128 RLSMGVQTFDDRLLKKIGRKHTAADVYETMKFLEKENFTNVSI--DLIYALPGQTLESFR 185

Query: 349 ATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE----QVDENVKA-----ERLLCLQKKLR 399
            T+     +       +       T   N +     Q+ E         E +  ++KK R
Sbjct: 186 DTLTRALALDLPHYSLYSLILENKTMFMNWVRQGRLQLPEEEIEAQMFDETIEAMEKKGR 245

Query: 400 EQQVSFNDACVGQI 413
            Q    N A  G+ 
Sbjct: 246 HQYEVSNFALTGKE 259


>gi|325297269|ref|YP_004257186.1| hypothetical protein Bacsa_0100 [Bacteroides salanitronis DSM
           18170]
 gi|324316822|gb|ADY34713.1| UPF0313 protein ygiQ [Bacteroides salanitronis DSM 18170]
          Length = 604

 Score = 56.5 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 47/324 (14%), Positives = 102/324 (31%), Gaps = 59/324 (18%)

Query: 108 CVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVD 167
           C+A    +    R      +      Y    + +       VV+  Y    + E     D
Sbjct: 228 CLADKRKQAQNFRH-----IEEESNKYEAARIWQETGGRTVVVNPPYPPLTQGELDRSFD 282

Query: 168 GGYNR-------KRGVTAFLTI------QEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDE 213
             Y R        + + A+  I        GC   C FC +   +G   +SRS   ++ E
Sbjct: 283 LPYTRLPHPKYKGKRIPAYDMIKFSVNLHRGCFGGCAFCTISAHQGKFIVSRSKESILKE 342

Query: 214 ARKLIDN-------------GVCEITLLGQNVNAWR------------GKGLDGEKCTFS 248
            + + +                    + G +    R               L+ +     
Sbjct: 343 VKAITEMPDFKGYLSDLGGPSANMYAMHGTDETLCRKCKRPSCVHPKICPNLNTDHRPLL 402

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDM------SDCLIKAHGDLDV--LMPYLH----LPVQ 296
           D+  S+  + G+ +    +    D+         + ++  +     ++ ++     +  +
Sbjct: 403 DIYRSVDAMPGIKKSFIGSGVRYDLLLHKSKDPAINRSTAEYTRELIVKHVSGRLKVAPE 462

Query: 297 SGSDRILKSMNRRHTAYEY--RQIIDRI-RSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
             S R+L  M +      Y  ++I DR+ R +     +   FI   PG T++D      +
Sbjct: 463 HTSLRVLDIMRKPPFEQFYEFKRIFDRLNRELNLRQQLIPYFISSHPGCTEEDMAELAVI 522

Query: 354 VDKIGYAQAFSFKYSPRLGTPGSN 377
             ++ +       ++P   T  + 
Sbjct: 523 TKRLDFHLEQVQDFTPTPMTVATE 546


>gi|313159107|gb|EFR58482.1| radical SAM protein YgiQ [Alistipes sp. HGB5]
          Length = 618

 Score = 56.5 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 53/304 (17%), Positives = 97/304 (31%), Gaps = 54/304 (17%)

Query: 151 DTDYSVEDKFERLSIVD----GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SR 205
           + D+S +  +ER         G       +   + I  GC   C+FC +   +G  I SR
Sbjct: 272 ELDHSFDLPYERAPHPRYNGKGDIPAWEMIKHSVNIHRGCFGGCSFCTISAHQGKFINSR 331

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQ-------------------------NVNAWRGKGL 240
           S   ++ E  ++      +  L                             ++      L
Sbjct: 332 SERSILAEVERVTRMPDFKGYLSDVGAPSANMYRMGGRDRELCRKCRRPSCLHPKMCPNL 391

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY-----LHLPV 295
           D +      L   +  +KG+ +          +   L      LD ++ Y     L +  
Sbjct: 392 DNDHRPLLALYEKIRAVKGVKKAFVG----SGIRYDLFDESPYLDTVVKYHTSGRLKVAP 447

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRI-----RSVRPDIAISSDFIVGFPGETDDDFRAT 350
           +   D +LK M +      + ++         R   P   +   FI   PG T+ D R+ 
Sbjct: 448 EHTEDAVLKLMRKP-PFALFERLTADFQRICRREGLPY-QLIPYFISSHPGCTERDMRSL 505

Query: 351 MD-LVDKIGYAQAFSFKYSPRLGTPGSNML-----EQVDENVKAERLLCLQKKLREQQVS 404
            + ++ K+ +        +P   T  S M          E V   R     +K R++   
Sbjct: 506 SEKVLGKLHFNLEQVQDLTPTPMTLSSVMFYTGENPYTHEKVYVARSQE--EKRRQKSYF 563

Query: 405 FNDA 408
           FN+ 
Sbjct: 564 FNEK 567


>gi|302551395|ref|ZP_07303737.1| radical SAM domain-containing protein [Streptomyces
           viridochromogenes DSM 40736]
 gi|302469013|gb|EFL32106.1| radical SAM domain-containing protein [Streptomyces
           viridochromogenes DSM 40736]
          Length = 657

 Score = 56.5 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 64/370 (17%), Positives = 112/370 (30%), Gaps = 51/370 (13%)

Query: 52  GYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVV----VAG 107
           G+   N    AD I    C +     + V      IR  K      G + L+       G
Sbjct: 156 GHAAFNPEPIADFI---DCAVIGDGEQAVLEITAIIRAWKAEGRPGGREELLFRLARTGG 212

Query: 108 CVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVD 167
                  +        +  VV  ++                V+D D     K   + + +
Sbjct: 213 VYVPGFYDVEYLPDGRIARVVPNRSGVPWR------VSKHTVMDLDEWPYPKQPLVPLAE 266

Query: 168 GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEIT 226
             + R       + I  GC + C FC           RS++ + D   + +   G  E+ 
Sbjct: 267 TVHERMS-----VEIFRGCTRGCRFCQAGMITRPVRERSITGIGDMVEQGLKATGFEEVG 321

Query: 227 LLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV 286
           LL     +       G+        Y   +I     L   ++     +  L         
Sbjct: 322 LLS---LSSADHSEIGDVAKGLADRYEDDKIG----LSLPSTRVDAFNIDLANELTRNGR 374

Query: 287 LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR-----IRSVRPDIAISSDFIVGFPG 341
               L    + GS+RI K +N+  +  +  + +        R V+        F+ G P 
Sbjct: 375 -RSGLTFAPEGGSERIRKVINKMVSEDDLIRTVATAYGNGWRQVK------LYFMCGLPT 427

Query: 342 ETDDDFRATMDLV-------DKIGYAQ-----AFSFKYSPRLGTPGSNMLEQVDENVKAE 389
           ETD+D     D+         ++  +           + P+  TP      Q+       
Sbjct: 428 ETDEDVLQIADMATRVIAKGREVSKSNDIRCTVSIGGFVPKPHTP-FQWAPQLSAEETDA 486

Query: 390 RLLCLQKKLR 399
           RL  L+ K+R
Sbjct: 487 RLEKLRNKIR 496


>gi|308235153|ref|ZP_07665890.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Gardnerella vaginalis ATCC 14018]
          Length = 439

 Score = 56.5 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 40/227 (17%), Positives = 77/227 (33%), Gaps = 22/227 (9%)

Query: 186 CDKFCTFC----VVPYTRGIEISRS-LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL 240
           C + C +C          G   SR   + V     +L+        +      +    G 
Sbjct: 30  CLRRCGYCDFNTYTARDLGEGASREGYADVAILEMRLVKKWQEFHGIFEPKAQSVFFGGG 89

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDC-----LIKAHGDLDVLMPYLHLPV 295
                   DL+  L EI+ L  +        + +        I+   +       +   +
Sbjct: 90  TPTVLKAQDLVRILQEIRNLWGIMPGAEITTEANPDTADESYIETLAEGG--FTRISFGM 147

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
           QS    +LK+++R HT     + +    +    +  S D I G PGE+ DD+R ++++  
Sbjct: 148 QSAVPHVLKTLDRTHTPENVERGVKTADAC--GLRSSVDLIYGAPGESLDDWRKSVEMAL 205

Query: 356 KIGYAQAFSFKYSPRLGTP-----GS---NMLEQVDENVKAERLLCL 394
            +G     ++  +    T       +   +  +  DE  K E    L
Sbjct: 206 SLGVNHVSAYALTVEPRTKMGRQIAAGTIHAPDDDDEAAKYEVADEL 252


>gi|224476021|ref|YP_002633627.1| lipoyl synthase [Staphylococcus carnosus subsp. carnosus TM300]
 gi|254809202|sp|B9DIX8|LIPA_STACT RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|222420628|emb|CAL27442.1| putative lipoic acid synthetase [Staphylococcus carnosus subsp.
           carnosus TM300]
          Length = 310

 Score = 56.5 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 42/256 (16%), Positives = 89/256 (34%), Gaps = 20/256 (7%)

Query: 112 AEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYN 171
            + EEILR+   + + +     Y   + + R +         ++V ++ +  +I +    
Sbjct: 3   TKNEEILRKPDWLKIKLNTNENYTGLKKMMREKN-------LHTVCEEAKCPNIHECWGE 55

Query: 172 RKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQN 231
           R+     F+ +   C + C FC V      E+   L +    A  +    +  + +    
Sbjct: 56  RR--TATFMILGAVCTRACRFCAVKTGLPNEL--DLGEPERVAESVELMNLKHVVITAV- 110

Query: 232 VNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL 291
               R    D     +++ +  + E      +    S      D L         ++ + 
Sbjct: 111 ---ARDDLRDAGSNVYAETVRKVRERNPYTTIEILPSDMGGDYDALETLMASKPDILNHN 167

Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351
              V+  +      +  R T     + + R + ++PDI   S  +VG  GET ++   TM
Sbjct: 168 IETVRRLTP----RVRARATYDRTLEFLRRSKELQPDIPTKSSIMVGL-GETIEELHETM 222

Query: 352 DLVDKIGYAQAFSFKY 367
           D +           +Y
Sbjct: 223 DDLRAADVDILTIGQY 238


>gi|153813171|ref|ZP_01965839.1| hypothetical protein RUMOBE_03587 [Ruminococcus obeum ATCC 29174]
 gi|149830702|gb|EDM85793.1| hypothetical protein RUMOBE_03587 [Ruminococcus obeum ATCC 29174]
          Length = 381

 Score = 56.5 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 35/211 (16%), Positives = 71/211 (33%), Gaps = 25/211 (11%)

Query: 186 CDKFCTFCVVPYTRGIE----ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD 241
           C + C +C   +  G        R +  +   A      GV    ++             
Sbjct: 18  CVQKCQYCD--FLSGPSDQETRDRYIKAL--RAEIQAVQGVEAYEIVSV---------FI 64

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRY-------TTSHPRDMSDCLIKAHGDLDVLMPYLHLP 294
           G          +++ I   ++ ++        T      +  L K +   +  +  L L 
Sbjct: 65  GGGTPSVLKAEAIASIMETIQKKFCFSPDAEITIESNPGTVDLAKLNAYRETGINRLSLG 124

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           +QS   + L+ + R HT  E+ Q     R       I+ D +   PG+T + +RA +  V
Sbjct: 125 LQSTDSKELRMLGRIHTYEEFLQSYQWAREAGFQ-NINIDLMFAIPGQTGEAWRAHLRQV 183

Query: 355 DKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            ++      ++      GTP +     + + 
Sbjct: 184 AELKPEHISAYSLIIEEGTPFAECELDLPDE 214


>gi|56478466|ref|YP_160055.1| radical-SAM emzyme [Aromatoleum aromaticum EbN1]
 gi|56314509|emb|CAI09154.1| conserved hypothetical protein,predicted radical-SAM emzyme
           [Aromatoleum aromaticum EbN1]
          Length = 681

 Score = 56.5 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 38/185 (20%), Positives = 71/185 (38%), Gaps = 25/185 (13%)

Query: 180 LTIQEGCDKF-CTFCVVPYTRGIEISR----SLSQVVDEARKLIDNGVCEITLLGQNVNA 234
           LT+  GC    C+FC V       ISR    + + +VD    +ID         GQ    
Sbjct: 412 LTVAHGCYWKKCSFCDVSL---DYISRYDGVAATTLVDRIEAIIDE-------TGQTGFH 461

Query: 235 WRGKGLDGE--KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLH 292
           +  +    +  K    +LL     I     +R+     +  +  L +   D   +   + 
Sbjct: 462 FVDEAAPPKALKALAQELLDRRRAISWWGNIRF----EKSFTRELCRLLADSGCIA--IS 515

Query: 293 LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352
             ++  SDR+LK MN+  +  +  ++          I + +  + GFP +T  D    ++
Sbjct: 516 GGLEVASDRLLKLMNKGVSVEQVARVTHGFSEA--GILVHAYLMYGFPTQTVQDTVDALE 573

Query: 353 LVDKI 357
            V ++
Sbjct: 574 YVRQL 578


>gi|33862054|ref|NP_893615.1| Fe-S oxidoreductase [Prochlorococcus marinus subsp. pastoris str.
           CCMP1986]
 gi|33634272|emb|CAE19957.1| conserved hypothetical protein [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
          Length = 539

 Score = 56.5 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 38/294 (12%), Positives = 96/294 (32%), Gaps = 41/294 (13%)

Query: 92  NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVD 151
           N   K    + V++ G       E++ +  P   ++    +      L+E+   G  +++
Sbjct: 148 NRAQKYNKSVKVILGGGAVSVFYEQLGKLLPKGTII----SVGEGENLIEKVLKGDSIIE 203

Query: 152 T----------DYSVEDKFERLSIVDGGYNRKRGVTA-------------FLTIQEGCDK 188
                      +  + ++          Y   + + A              +  + GC  
Sbjct: 204 ERCYLAGQKPRNKLIHEQPSGTIKTACNYKYIKSIWAEFDWYIEGGDYYVGVQTKRGCPH 263

Query: 189 FCTFCVVPYTRGIEISR-SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTF 247
            C FCV     G ++    ++++++E ++L + GV             +    D +    
Sbjct: 264 NCCFCVYGVVEGKKVRVNPVNEIIEEMKQLYEMGVRGFWFTDAQFIPTKNHIQDAK---- 319

Query: 248 SDLLYSLSEIKGLVRLRY-TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306
             LL ++ + +G   L++       ++   L +   +    M Y  + + SGS  +++ M
Sbjct: 320 -LLLQAIKD-QGWTDLKWAAYIRADNIDRELAQLMVETG--MSYFEIGITSGSQELVRKM 375

Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGF--PGETDDDFRATMDLVDKIG 358
              +      +    +                F    ET +  + T+    ++ 
Sbjct: 376 QLAYNLKTVLENCRMLVEA--GFRNHVSVNYSFNVFDETPNTIKQTVAYHRELE 427


>gi|114048443|ref|YP_738993.1| putative radical SAM protein [Shewanella sp. MR-7]
 gi|113889885|gb|ABI43936.1| conserved hypothetical radical SAM protein [Shewanella sp. MR-7]
          Length = 309

 Score = 56.5 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 50/241 (20%), Positives = 83/241 (34%), Gaps = 40/241 (16%)

Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW--------RGKG 239
             CTFC V        S   ++ +    + +  G          +NA             
Sbjct: 43  GGCTFCNV-----ASFSYQQAETL-SISEQLRQGKARYKEAKPKLNADKFIAYFQAYTST 96

Query: 240 LDGEKCTFSDLLYSL--SEIKGLVRLRYTTSHPRDMSDCLIKAHGDL--DVLMPYLHLPV 295
            D  +   +    ++  SEI GL       + P  + D ++          +  +L L +
Sbjct: 97  YDEYQVLMAKYDEAVKDSEIVGL----CVGTRPDCVPDNVLDLLASYQQKGVDVWLELGL 152

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
           Q+ +D+ L  +NR H    Y   + R RS    + + +  I+G PGET  D+ AT+  V 
Sbjct: 153 QTANDKTLHKINRGHDFACYCNTVARARSR--GLKVCTHLILGLPGETHLDYMATLQAVL 210

Query: 356 KIGYAQAFSFKYSPRLG-TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQII 414
             G             G T             +A RL  L        +    ACVG+++
Sbjct: 211 AQGVDGLKLHPLHVVEGSTMAKAW--------RAGRLPLL-------SIEEYAACVGELV 255

Query: 415 E 415
            
Sbjct: 256 R 256


>gi|331016971|gb|EGH97027.1| coproporphyrinogen III oxidase [Pseudomonas syringae pv. lachrymans
           str. M302278PT]
          Length = 460

 Score = 56.5 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 80/220 (36%), Gaps = 15/220 (6%)

Query: 160 FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC----VVPYTRGIEIS---RSLSQVVD 212
           FE L  +      +R ++ ++ I   C   C +C    V+   RG   +   R   ++  
Sbjct: 38  FELLHALRESRKARRPLSLYVHIPF-CANICYYCACNKVITKDRGRAQAYLQRLEHEIRM 96

Query: 213 EARKLI-DNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPR 271
            A  L     V ++ L G          L             L +  G   +        
Sbjct: 97  LACHLAPSQVVEQLHLGGGTPTFLSHDELRRLMARLRAHFTLLEDDSGDYGIEIDPREAD 156

Query: 272 DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAI 331
             S  L++  G        + L VQ     + +++NR  +  E R I++  R+++   ++
Sbjct: 157 WASMGLLRELG-----FNRVSLGVQDLDPTVQRAINRMQSLEETRAIVEAARTLQFR-SV 210

Query: 332 SSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
           + D I G P +T   F  T+D + ++   +   F Y+   
Sbjct: 211 NIDLIYGLPRQTPQGFSRTVDEIIELQPDRLSVFNYAHLP 250


>gi|146339113|ref|YP_001204161.1| putative Fe-S oxidoreductase [Bradyrhizobium sp. ORS278]
 gi|146191919|emb|CAL75924.1| putative Fe-S oxidoreductase homolog to Magnesium-protoporphyrin IX
           monomethyl ester (oxidative) cyclase [Bradyrhizobium sp.
           ORS278]
          Length = 429

 Score = 56.5 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 37/238 (15%), Positives = 73/238 (30%), Gaps = 20/238 (8%)

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           +  E                 G  A +    GC   CTFC   + R     R  + ++DE
Sbjct: 179 WPAEMIRRHHHHHHRFEATPVGPGAEVEGSRGCPYHCTFCAKDHFRNGYRKRPSAVILDE 238

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD- 272
             +L   GV  +  + +                 ++LL  L        L++      D 
Sbjct: 239 VDRLRTQGVEYVYFIDEIFLPN------------AELLQGLVA----RGLKFGVQTRIDL 282

Query: 273 MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAIS 332
               +++  G        +   ++S +    ++   ++      Q+ DR+   R  +   
Sbjct: 283 WKPEMLELLGRAG--CVSIEAGIESLTPEG-RAALAKNCRMTTEQLADRLIEARRHVPFV 339

Query: 333 SDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER 390
              ++  P + D   +     +   G          P  G+P    L  V ++   ER
Sbjct: 340 QANLIEMPQDDDPVVQRWRQRMQGAGVWANDPVPLYPYPGSPDYQKLWGVPDDQSWER 397


>gi|29375873|ref|NP_815027.1| coproporphyrinogen III oxidase [Enterococcus faecalis V583]
 gi|229546018|ref|ZP_04434743.1| coproporphyrinogen dehydrogenase [Enterococcus faecalis TX1322]
 gi|256852946|ref|ZP_05558316.1| coproporphyrinogen III oxidase [Enterococcus faecalis T8]
 gi|294781172|ref|ZP_06746521.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Enterococcus faecalis PC1.1]
 gi|29343335|gb|AAO81097.1| oxygen-independent coproporphyrinogen III oxidase, putative
           [Enterococcus faecalis V583]
 gi|229308861|gb|EEN74848.1| coproporphyrinogen dehydrogenase [Enterococcus faecalis TX1322]
 gi|256711405|gb|EEU26443.1| coproporphyrinogen III oxidase [Enterococcus faecalis T8]
 gi|294451739|gb|EFG20192.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Enterococcus faecalis PC1.1]
          Length = 394

 Score = 56.5 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 49/254 (19%), Positives = 98/254 (38%), Gaps = 28/254 (11%)

Query: 177 TAFLTIQEGCDKFCTFCVV--PYTRGIEISRSLSQVVDEARKLI----DNGVCEITLLGQ 230
           +A++ I   C+  C +C     +  G  +   +  ++ E +       +  +  I + G 
Sbjct: 17  SAYIHIPF-CEHICYYCDFNKVFLEGQPVDEYIQSLLKEIQLTQALYPEQEMKTIYIGGG 75

Query: 231 NVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT-SHPRDMSDCLIKAHGDLDVLMP 289
              +   K LD        +   L       R  +T  ++P D++   ++   +    + 
Sbjct: 76  TPTSLSAKQLD---VLLKGVREQL---TFDDRNEFTVEANPGDLTQEKLQVMKNYG--VN 127

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI-RSVRPDIAISSDFIVGFPGETDDDFR 348
            L + VQ+  DR+LK + R+HTA +  + +  + +    +++I  D I   PG+T + FR
Sbjct: 128 RLSMGVQTFDDRLLKKIGRKHTAADVYETMKFLEKENFTNVSI--DLIYALPGQTLESFR 185

Query: 349 ATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE----QVDENVKA-----ERLLCLQKKLR 399
            T+     +       +       T   N +     Q+ E         E +  ++KK R
Sbjct: 186 DTLTRALALDLPHYSLYSLILENKTMFMNWVRQGRLQLPEEEIEAQMFDETIEAMEKKGR 245

Query: 400 EQQVSFNDACVGQI 413
            Q    N A  G+ 
Sbjct: 246 HQYEVSNFALTGKE 259


>gi|116670786|ref|YP_831719.1| coproporphyrinogen III oxidase [Arthrobacter sp. FB24]
 gi|116610895|gb|ABK03619.1| coproporphyrinogen III oxidase, anaerobic [Arthrobacter sp. FB24]
          Length = 409

 Score = 56.5 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 44/236 (18%), Positives = 80/236 (33%), Gaps = 35/236 (14%)

Query: 168 GGYNRKRGVTAFLTIQEGCDKFCTFC------VVPYTRGIEI----SRSLSQVVDEARKL 217
           G   R+ G+   +     C   C +C            G       S ++++V   A+ L
Sbjct: 24  GAAQRRFGLYVHIPF---CAVRCGYCDFNTYTATELGGGASQDAYASTAIAEVEFAAKAL 80

Query: 218 IDNGVCEITLLGQNVNAWRGKGLDGEKCTFS---DLLYSLSEIKGLVRLRYTTSHPRD-- 272
             +G+ E  L              G   T     DL   L+       L        +  
Sbjct: 81  QGSGLPERRLGTV--------FFGGGTPTLLPAEDLARILTAAVSQWGLEPGAEVTTEAN 132

Query: 273 ---MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329
              ++   ++   D       +   +QS    +LK ++R HT     Q++   R     +
Sbjct: 133 PDSVTPESLQLLADAG--FTRVSFGMQSAVPHVLKVLDRTHTPSRVPQVVQWARDA--GL 188

Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN--MLEQVD 383
           A+S D I G PGE+ +D+R +++     G     ++      GT  +      +V 
Sbjct: 189 AVSLDLIYGTPGESLEDWRYSLETALSYGPDHISAYALIVEDGTKLAAQIRRGEVP 244


>gi|310829111|ref|YP_003961468.1| hypothetical protein ELI_3546 [Eubacterium limosum KIST612]
 gi|308740845|gb|ADO38505.1| hypothetical protein ELI_3546 [Eubacterium limosum KIST612]
          Length = 379

 Score = 56.5 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 40/211 (18%), Positives = 77/211 (36%), Gaps = 17/211 (8%)

Query: 186 CDKFCTFCVVPYTRG---IEISRSLSQVVDEARKLIDNGVCE---ITLLGQNVNAWRGKG 239
           C + C +C  P   G    E  R    V  E +                G    ++   G
Sbjct: 13  CRQKCRYCDFPSWAGLGEAEAGRYFDAVCLEIKAFAAEHGRLPAGTVYFGGGTPSYVAAG 72

Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
             G+     D +    ++          ++P  ++D   +A+  +   +  + + +Q+ S
Sbjct: 73  YIGK---VMDCIRECFKLPEAAIEATIEANPGTLTDAKCRAYRSMG--LNRVSMGLQTTS 127

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI-G 358
           DR LK++ R HT  ++   +D +     +  IS+D + G PG+T +D R  +D +     
Sbjct: 128 DRGLKALGRIHTCADFVASLDLLVGAGFE-NISADLMFGLPGQTLEDVRQDIDRLTAFAP 186

Query: 359 YAQAFSFKYSPRLGTPGSNMLEQ----VDEN 385
                 +      GT    +  Q    V + 
Sbjct: 187 IKHISCYSLKIEEGTAFDTLYRQGKLPVPDE 217


>gi|297544736|ref|YP_003677038.1| Radical SAM domain-containing protein [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
 gi|296842511|gb|ADH61027.1| Radical SAM domain protein [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
          Length = 354

 Score = 56.5 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/200 (15%), Positives = 71/200 (35%), Gaps = 11/200 (5%)

Query: 185 GCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK 244
           GC   C FC      G +         +E R+ I++ +  +    +   ++ G    G  
Sbjct: 16  GCPFKCVFCNQNSITGRQR----EITEEEVRQTIESHLKTLPRDAEIEVSFFGGSFTGIP 71

Query: 245 CTFSDLLYSLSEI---KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
               +    +++    KG +     ++ P  +   +++        +  + L VQS  + 
Sbjct: 72  QDMQNFYLGIAKEYLDKGKIDAIRLSTRPDYIDTKILQNLKRYQ--VSIIELGVQSMDEE 129

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
           +L    R HT+ +  + ++ IR    D  +    ++G P +  +    T   + ++    
Sbjct: 130 VLLKSRRGHTSEDVVKAVNLIRQY--DFKLGLQIMIGLPEDNLEKSLNTAYKIVELKPDF 187

Query: 362 AFSFKYSPRLGTPGSNMLEQ 381
              +       T    M ++
Sbjct: 188 VRIYPTLVIKDTYLERMYKE 207


>gi|188583395|ref|YP_001926840.1| radical SAM domain protein [Methylobacterium populi BJ001]
 gi|179346893|gb|ACB82305.1| Radical SAM domain protein [Methylobacterium populi BJ001]
          Length = 678

 Score = 56.5 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 44/243 (18%), Positives = 79/243 (32%), Gaps = 34/243 (13%)

Query: 161 ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLID 219
              S  D        +   +TI  GC   CTFC +    G  I +RS   ++ E  ++ D
Sbjct: 323 PHPSYGDAKIPAWDMIKFSVTIMRGCFGGCTFCSITEHEGRVIQNRSEGSILREIERIRD 382

Query: 220 NGVCEITLL----GQNVNAWRGKGLDGE----------------------KCTFSDLLYS 253
                  ++    G   N +R    D +                            L   
Sbjct: 383 KTPGFTGVISDVGGPTANMYRMACKDPKIEAACRLPSCVFPDICPNLNTSHDDLIRLYRK 442

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRRH- 310
           + E+KG+ ++   +    D++    +   +L    +   L +  +      L  M +   
Sbjct: 443 VREVKGVKKVMVASGVRYDLAVRSPEYVKELVTHHVGGRLKIAPEHTERGPLDKMMKPGI 502

Query: 311 -TAYEYRQIIDRI-RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY--AQAFSFK 366
            T   ++++ D   +       +   FI   PG TD+D       + K  Y   Q  +F 
Sbjct: 503 GTYDRFKEMFDEAAKQAGKKYYLIPYFIAAHPGTTDEDMLQLALWLKKNDYRADQVQTFL 562

Query: 367 YSP 369
            SP
Sbjct: 563 PSP 565


>gi|120554396|ref|YP_958747.1| radical SAM domain-containing protein [Marinobacter aquaeolei VT8]
 gi|120324245|gb|ABM18560.1| Radical SAM domain protein [Marinobacter aquaeolei VT8]
          Length = 298

 Score = 56.5 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 35/215 (16%), Positives = 67/215 (31%), Gaps = 14/215 (6%)

Query: 160 FERLSIVDGGYNRKRGVTAFLTIQEGCD-KFCTFCVV-PYTRGIEISRSLSQVVDEARKL 217
           F    I           +  L +  GC    CTFC +    +    +R    +  +  K 
Sbjct: 4   FPIDYIEPVFRPPSEAKSLILPVTNGCSWNQCTFCEMYTQPQKKFRARKPEDIRADIEKA 63

Query: 218 IDN-GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI-KGLVRLRYTTSHPRDMSD 275
               G      L        G  +        +++  L     GL R+            
Sbjct: 64  AAAFGDVRRVFLAD------GDAMVLPTRRLLEIIADLKRAFPGLERVSSYCLPRNLAKK 117

Query: 276 CLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDF 335
            + +     +  +  L++ ++SG D +L+ +N+  T    R  + +IR     +  S   
Sbjct: 118 SVEELAQLREAGLKILYVGMESGDDEVLRRVNKGETWESTRSALVKIREA--GLVSSVMV 175

Query: 336 IVGFPGE--TDDDFRATMDLVDKIGYAQAFSFKYS 368
           + G  GE  +      T  L ++       +   S
Sbjct: 176 LNGLGGEALSRQHAINTATLCNETQPDYLSTLVVS 210


>gi|229550209|ref|ZP_04438934.1| coproporphyrinogen dehydrogenase [Enterococcus faecalis ATCC 29200]
 gi|300859895|ref|ZP_07105983.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Enterococcus faecalis TUSoD Ef11]
 gi|307277568|ref|ZP_07558660.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Enterococcus faecalis TX2134]
 gi|312952302|ref|ZP_07771177.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Enterococcus faecalis TX0102]
 gi|229304647|gb|EEN70643.1| coproporphyrinogen dehydrogenase [Enterococcus faecalis ATCC 29200]
 gi|300850713|gb|EFK78462.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Enterococcus faecalis TUSoD Ef11]
 gi|306505833|gb|EFM75011.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Enterococcus faecalis TX2134]
 gi|310629686|gb|EFQ12969.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Enterococcus faecalis TX0102]
 gi|315147785|gb|EFT91801.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Enterococcus faecalis TX4244]
          Length = 394

 Score = 56.5 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 49/254 (19%), Positives = 98/254 (38%), Gaps = 28/254 (11%)

Query: 177 TAFLTIQEGCDKFCTFCVV--PYTRGIEISRSLSQVVDEARKLI----DNGVCEITLLGQ 230
           +A++ I   C+  C +C     +  G  +   +  ++ E +       +  +  I + G 
Sbjct: 17  SAYIHIPF-CEHICYYCDFNKVFLEGQPVDEYIQSLLKEIQLTQALYPEQEMKTIYIGGG 75

Query: 231 NVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT-SHPRDMSDCLIKAHGDLDVLMP 289
              +   K LD        +   L       R  +T  ++P D++   ++   +    + 
Sbjct: 76  TPTSLSAKQLD---VLLKGVREQL---TFDDRNEFTVEANPGDLTQEKLQVMKNYG--VN 127

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI-RSVRPDIAISSDFIVGFPGETDDDFR 348
            L + VQ+  DR+LK + R+HTA +  + +  + +    +++I  D I   PG+T + FR
Sbjct: 128 RLSMGVQTFDDRLLKKIGRKHTAADVYETMKFLEKENFTNVSI--DLIYALPGQTLESFR 185

Query: 349 ATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE----QVDENVKA-----ERLLCLQKKLR 399
            T+     +       +       T   N +     Q+ E         E +  ++KK R
Sbjct: 186 DTLTRALALDLPHYSLYSLILENKTMFMNWVRQGRLQLPEEEIEAQMFDETIEAMEKKGR 245

Query: 400 EQQVSFNDACVGQI 413
            Q    N A  G+ 
Sbjct: 246 HQYEVSNFALTGKE 259


>gi|170683331|ref|YP_001746196.1| coproporphyrinogen III oxidase [Escherichia coli SMS-3-5]
 gi|170521049|gb|ACB19227.1| oxygen-independent coproporphyrinogen III oxidase [Escherichia coli
           SMS-3-5]
          Length = 457

 Score = 56.5 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 45/269 (16%), Positives = 92/269 (34%), Gaps = 30/269 (11%)

Query: 157 EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS-------LSQ 209
           ED  E+  +       +R ++ ++ I   C K C FC        +  ++         +
Sbjct: 34  EDFGEQAFLQAVARYPERPLSLYVHIPF-CHKLCYFCGCNKIVTRQQHKADQYLDALEQE 92

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE-----IKGLVRLR 264
           +V  A       V ++   G       G      K   S L+  L E         + + 
Sbjct: 93  IVHRAPLFAGRKVSQLHWGG-------GTPTYLNKAQISRLMKLLRENFQFNADAEISIE 145

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
                PR++   ++      D     L + VQ  +  + + +NR         +++  R 
Sbjct: 146 V---DPREIELDVLDHLRAED--FNRLSMGVQDFNKEVQRLVNREQDEEFIFALLNHARE 200

Query: 325 VRPDIAISS-DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQV 382
           +      ++ D I G P +T + F  T+  V ++   +   F Y+       +   ++  
Sbjct: 201 I--GFTSTNIDLIYGLPKQTPESFAFTLKRVAELNPDRLSVFNYAHLPTIFAAQRKIKDA 258

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVG 411
           D     ++L  LQ+ +     S     +G
Sbjct: 259 DLPSPQQKLDILQETIAFLTQSGYQ-FIG 286


>gi|302389468|ref|YP_003825289.1| oxygen-independent coproporphyrinogen III oxidase
           [Thermosediminibacter oceani DSM 16646]
 gi|302200096|gb|ADL07666.1| oxygen-independent coproporphyrinogen III oxidase
           [Thermosediminibacter oceani DSM 16646]
          Length = 374

 Score = 56.5 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 43/231 (18%), Positives = 83/231 (35%), Gaps = 18/231 (7%)

Query: 186 CDKFCTFCVV-PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK 244
           C K C +C    Y     I   +  +  E      +G+  I        +    G     
Sbjct: 13  CVKKCAYCDFNSYAETESIPLYVDSLKREI--SFYSGINRIV------TSIYIGGGTPTV 64

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLI---KAHGDLDVLMPYLHLPVQSGSDR 301
            +  DL   +  I G   +  +     + +   +   K     D  +  L + +Q+  D 
Sbjct: 65  LSEGDLTSIIETIYGAFNISASLEFTVEANPETLSRRKLAVLRDAGVNRLSMGLQAFQDE 124

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
           +LK M R HTA  + +     R    D  I+ D I G P ++ DDFR ++  +  +    
Sbjct: 125 LLKIMGRIHTAKGFEEKFIIAREEGFD-NINVDLIFGLPNQSVDDFRYSLGRLADLSPEH 183

Query: 362 AFSFKYSPRLGTPGSNMLEQ-----VDENVKAERLLCLQKKLREQQVSFND 407
              +  +   GT    + ++       E+ + +     ++ L+E+  S  +
Sbjct: 184 VSCYGLTVEEGTEFYRLQKEGRLPLPSEDEERKMYHTAREILKERGYSHYE 234


>gi|254382753|ref|ZP_04998110.1| conserved hypothetical protein [Streptomyces sp. Mg1]
 gi|194341655|gb|EDX22621.1| conserved hypothetical protein [Streptomyces sp. Mg1]
          Length = 653

 Score = 56.5 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 66/403 (16%), Positives = 122/403 (30%), Gaps = 75/403 (18%)

Query: 70  CHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVV----VAGCVAQAEGEEILRRSPIVN 125
           C +     + V      IR  K      G + +++      G       +        + 
Sbjct: 177 CAVIGDGEQAVLDMTEIIRAWKAEGRPGGREEVLLRLAKTGGVYVPGFYDVEYLPDGRIG 236

Query: 126 VVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEG 185
            VV  ++                V+D D     K   + + +  + R       + I  G
Sbjct: 237 RVVPNRSGVPWR------VSKHTVMDLDEWPYPKQPLVPLAETVHERMS-----VEIFRG 285

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEK 244
           C + C FC           RS++ + +   K +   G  E+ LL  +           + 
Sbjct: 286 CTRGCRFCQAGMITRPVRERSITGIGEMVEKGLKATGFEEVGLLSLSS---------ADH 336

Query: 245 CTFSDLLYSLSEI--KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
              +D+   L++      V L   ++     +  L             L    + GS+R+
Sbjct: 337 TEIADIAKGLADRYSDDKVGLSLPSTRVDAFNVDLANELTRNGR-RSGLTFAPEGGSERM 395

Query: 303 LKSMNRRHTAYEYRQIIDR-----IRSVRPDIAISSDFIVGFPGETDDDFRATMDLV--- 354
            K +N+  +  +  + +        R V+        F+ G P ETD+D     D+    
Sbjct: 396 RKVINKMVSEEDLIRTVATAYGNGWRQVK------LYFMCGLPTETDEDVLQIGDMAVNV 449

Query: 355 ----------DKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLR----- 399
                     + I         + P+  TP      Q+       RL  L+ K+R     
Sbjct: 450 IAKGREVSGQNDIRCT-VSIGGFVPKPHTP-FQWAPQLSAEETDARLTKLRDKIRGDKKY 507

Query: 400 ----------------EQQVSFNDACVGQIIEVLIEKHGKEKG 426
                           E  +S  D  +G +I  + E  G+  G
Sbjct: 508 GRSIGFRYHDGKPGIVEGLLSRGDRRIGDVIRAVYESGGRFDG 550


>gi|94309006|ref|YP_582216.1| lipoyl synthase [Cupriavidus metallidurans CH34]
 gi|123384089|sp|Q1LSC9|LIPA_RALME RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|93352858|gb|ABF06947.1| lipoate synthase [Cupriavidus metallidurans CH34]
          Length = 330

 Score = 56.5 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 35/208 (16%), Positives = 71/208 (34%), Gaps = 12/208 (5%)

Query: 161 ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN 220
           E  S  + G    +G   F+ + + C + C FC V + R   +   +++  + AR +   
Sbjct: 78  EEASCPNIGECFGKGTATFMIMGDKCTRRCPFCDVGHGRPDPL--DVNEPGNLARTIAQL 135

Query: 221 GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKA 280
            +  + +   +    R    DG    + D +    E+    R+       R   D  +  
Sbjct: 136 KLNYVVITSVD----RDDLRDGGAQHYVDCISQTRELSPNTRIEVLVPDFRGRLDRALDI 191

Query: 281 H-GDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGF 339
                  +M +    V     R+ K            +++   +   P++   S  +VG 
Sbjct: 192 LQACPPDVMNHNMETV----PRLYKQARPGADYAHSLKLLQDFKRRNPNVPTKSGLMVGL 247

Query: 340 PGETDDDFRATMDLVDKIGYAQAFSFKY 367
            GETD++    M  +           +Y
Sbjct: 248 -GETDEEILDVMRDMRAHDIDMLTIGQY 274


>gi|302869302|ref|YP_003837939.1| oxygen-independent coproporphyrinogen III oxidase [Micromonospora
           aurantiaca ATCC 27029]
 gi|302572161|gb|ADL48363.1| oxygen-independent coproporphyrinogen III oxidase [Micromonospora
           aurantiaca ATCC 27029]
          Length = 409

 Score = 56.5 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 41/226 (18%), Positives = 76/226 (33%), Gaps = 32/226 (14%)

Query: 186 CDKFCTFCVVPYTRGIE----ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD 241
           C   C +C        E     SR        A  ++        +LG +          
Sbjct: 41  CASRCGYCDFNTYTASELGGGASRE-----TYADSVLAELALAARVLGDSPPPRVDTVFV 95

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMP------------ 289
           G           L+ I   +   +  +   +++        + + + P            
Sbjct: 96  GGGTPTLLPADDLARILDGIDRVWGLAADAEVTTE-----ANPESVSPESLKTLRAAGYT 150

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
            + L +QS +  +L  ++RRH+A          R    +  ++ D I G PGET DDF A
Sbjct: 151 RISLGMQSAAPGVLAVLDRRHSAGRATAAALEARDAGFE-HVNLDLIYGTPGETADDFAA 209

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTP-GSNM-LEQVD---ENVKAER 390
           ++  V   G     ++      GT   + M   ++    ++V A+R
Sbjct: 210 SLAQVVDAGVDHVSAYALIVEDGTRLAARMRRGELPYPSDDVAADR 255


>gi|282899030|ref|ZP_06307012.1| Radical SAM [Cylindrospermopsis raciborskii CS-505]
 gi|281196170|gb|EFA71085.1| Radical SAM [Cylindrospermopsis raciborskii CS-505]
          Length = 868

 Score = 56.5 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 44/254 (17%), Positives = 82/254 (32%), Gaps = 32/254 (12%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVD-EARKLIDNGVCEITLLGQNVNAWRGK 238
           + I+ GC + C FC               +VV+     +   G  E +LL  + + +   
Sbjct: 254 IEIRRGCTRGCRFCQPGMLTRPARDVEPEKVVEAIVDGMHKTGYNEFSLLSLSCSDYLSL 313

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
              G +        ++             S   D  D  I            L    ++G
Sbjct: 314 PAVGMEIKNRLRNENI--------TLSLPSQRVDRFDENIAKILGGTR-QGSLTFAPEAG 364

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDD---FRATMDLVD 355
           S R+   +N+  T  E  + +        D  I   F++G PGETD D      T+  + 
Sbjct: 365 SQRMRDIINKGLTNEELLRGVKTAWEKGWD-KIKLYFMIGLPGETDADILAIAETVRWLQ 423

Query: 356 K---------IGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA--------ERLLCLQKKL 398
           +         I +       ++P+  TP         E V+          R   ++   
Sbjct: 424 RECRAQDRRSINF-NLTVSNFTPKPHTPFQWHSVSTSEFVRKQNLLKQEFRRTRNVKVNF 482

Query: 399 REQQVSFNDACVGQ 412
            + ++S  +  +G+
Sbjct: 483 TDVRLSAMEDFIGR 496


>gi|297673346|ref|XP_002814729.1| PREDICTED: lipoyl synthase, mitochondrial-like isoform 2 [Pongo
           abelii]
          Length = 322

 Score = 56.5 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 36/186 (19%), Positives = 67/186 (36%), Gaps = 15/186 (8%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLS--QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
           C + C FC V   R       L   +  + A+ + + G+  + L   +    R    DG 
Sbjct: 137 CTRGCRFCSVKTARNP---PPLDASEPYNTAKAIAEWGLDYVVLTSVD----RDDMPDGG 189

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPR-DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
               +  +  L E    + +   T   R D+      A   LDV    +    +  S   
Sbjct: 190 AEHIAKTVSYLKERNPKILVECLTPDFRGDLKAIEKVALSGLDVYAHNVETVPELQS--- 246

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
            K  + R    +  +++   + V+PD+   +  ++G  GE D+   ATM  + +      
Sbjct: 247 -KVRDPRANFDQSLRVLKHAKKVQPDVISKTSIMLGL-GENDEQVYATMKALREADVDCL 304

Query: 363 FSFKYS 368
              +Y 
Sbjct: 305 TLGQYM 310


>gi|269218590|ref|ZP_06162444.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Actinomyces sp. oral taxon 848 str. F0332]
 gi|269211701|gb|EEZ78041.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Actinomyces sp. oral taxon 848 str. F0332]
          Length = 403

 Score = 56.5 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 38/208 (18%), Positives = 74/208 (35%), Gaps = 12/208 (5%)

Query: 175 GVTAFLTIQEGCDKFCTFCVVP------YTRGIEISRSLSQVVDEAR--KLIDNGVCEIT 226
           G++A++ +   C   C +C         +  G   S     +  E    + +  G     
Sbjct: 24  GLSAYVHVPF-CAVRCGYCDFNTYTNLDFGPGASTSDFPESLAREIALSRGVLRGGEAGP 82

Query: 227 LLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV 286
           L+   V    G     +      +L +L    GL  +   T+     S          D 
Sbjct: 83  LI-DTVFFGGGTPTMLDPGQLGSVLAALDAAFGLREVAEATTEANPESVDRESLFQLADA 141

Query: 287 LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDD 346
               +   +QS  + +L +++RRHT  +  + +   R     + +S D I G PGET   
Sbjct: 142 GFTRVSFGMQSAVESVLATLDRRHTPGQVGRAVGWAREA--GLDVSVDLIYGAPGETMGQ 199

Query: 347 FRATMDLVDKIGYAQAFSFKYSPRLGTP 374
           +R +++    +      ++  +   GT 
Sbjct: 200 WRRSVEAAIALEPDHLSAYALTVEPGTK 227


>gi|254714198|ref|ZP_05176009.1| lipoyl synthase [Brucella ceti M644/93/1]
 gi|254717633|ref|ZP_05179444.1| lipoyl synthase [Brucella ceti M13/05/1]
 gi|261219472|ref|ZP_05933753.1| lipoyl synthase [Brucella ceti M13/05/1]
 gi|261321968|ref|ZP_05961165.1| lipoyl synthase [Brucella ceti M644/93/1]
 gi|260924561|gb|EEX91129.1| lipoyl synthase [Brucella ceti M13/05/1]
 gi|261294658|gb|EEX98154.1| lipoyl synthase [Brucella ceti M644/93/1]
          Length = 322

 Score = 56.5 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 36/260 (13%), Positives = 84/260 (32%), Gaps = 22/260 (8%)

Query: 112 AEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYN 171
              E+  R    V   +    + R+   + R     R +     +    E     + G  
Sbjct: 15  RHPEKAHRPDNEV---LKKPDWIRVKAPVSRGYGETREIVRSNKLVTVCEEAGCPNIGEC 71

Query: 172 RKRGVTAFLTIQEGCDKFCTFCV----VPYTRGIEISRSLSQVVDEARKLIDNGVCEITL 227
            ++    F+ + E C + C FC     +P             +    +++   G+  + +
Sbjct: 72  WEKKHATFMIMGEICTRACAFCNISTGIPNALNPN---EPENIAKAVKQM---GLTHVVI 125

Query: 228 LGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL 287
              +    R    DG    F++++ ++ E      +   T         L         +
Sbjct: 126 TSVD----RDDLADGGAHHFAEVIKAVREAAPATTIEILTPDFLRKEGALEIVVKARPDV 181

Query: 288 MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDF 347
             +    +++   + LK +      +   +++ R++ + P I   S  +VG  GE  ++ 
Sbjct: 182 FNH---NLETVPSKYLK-VRPGARYFHSIRLLQRVKELDPTIFTKSGIMVGL-GEERNEI 236

Query: 348 RATMDLVDKIGYAQAFSFKY 367
              MD +           +Y
Sbjct: 237 LQLMDDLRSADVDFMTIGQY 256


>gi|256829352|ref|YP_003158080.1| Radical SAM domain-containing protein [Desulfomicrobium baculatum
           DSM 4028]
 gi|256578528|gb|ACU89664.1| Radical SAM domain protein [Desulfomicrobium baculatum DSM 4028]
          Length = 505

 Score = 56.5 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 38/272 (13%), Positives = 82/272 (30%), Gaps = 14/272 (5%)

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEI-LRRSPIVNVVVGPQTYYR-LPELLER 142
                L         ++L+V+ G         +   ++  V    G + +++     L  
Sbjct: 70  KECEQLVRILKSLAPEVLLVLGGPEVSHFPHRLDFSQADHVICGEGEEQFHQLCCAYLTG 129

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           +    R++       D+      +    +    V  ++    GC   C FC+      + 
Sbjct: 130 SAGLPRIITASPPDPDRLVMPYDLYTDADVAHRVI-YVEASRGCPFSCEFCL-SSIDKLV 187

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
                 + + E   L D G      + +  N    +   G    F               
Sbjct: 188 RYFDPDRFLRELATLWDRGARNFKFIDRTFNLSMQR--VGPILDFFLRRQ-------PPF 238

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           L +    P      L +           L + +Q+ +  +  S++RR         +  +
Sbjct: 239 LVHFEVVPEHFPFELREKLAQFPPGTLQLEVGIQTLNADVAASIHRRLDMDRITANLRFL 298

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
                +  +  D I+G PGE+ D F   ++ +
Sbjct: 299 EEET-NAHLHVDLIIGLPGESADSFGRNLNRL 329


>gi|148266100|ref|YP_001232806.1| radical SAM domain-containing protein [Geobacter uraniireducens
           Rf4]
 gi|146399600|gb|ABQ28233.1| Radical SAM domain protein [Geobacter uraniireducens Rf4]
          Length = 462

 Score = 56.5 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 43/236 (18%), Positives = 80/236 (33%), Gaps = 27/236 (11%)

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQ-----EGCDKFCTFCVVPYTRGIEI 203
           + D D      ++   I      R         +       GC   C FC          
Sbjct: 160 IADIDTIPFPAYDLFPIEYYRLLRMPHAGNADFVMPVLSGRGCPFTCNFCY--RLDEGFR 217

Query: 204 SRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            RS + +++E R L  N G+  I    + + +   +          D +    +IK    
Sbjct: 218 PRSNASIIEEIRMLKRNYGITYIAFSDELLMSSEAR----VTALCEDFIRENLDIKWDCN 273

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
            R   + P      L+           +++  +++  D ILK+MN+  T  +  + I+  
Sbjct: 274 GRLNYAKP-----ELLALMKRAG--CVFINYGIEAFDDVILKNMNKALTTSQIVRGIEAT 326

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA----QAFSFKYSPRLGTP 374
            +V   I+   + I G  GE+ +  R  +D +  + Y            +P  G P
Sbjct: 327 LAV--GISPGFNIIFGNIGESRESLRKGVDFL--LKYDDGAQMRTIRPVTPYPGAP 378


>gi|312128718|ref|YP_003993592.1| Radical SAM domain-containing protein [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311778737|gb|ADQ08223.1| Radical SAM domain protein [Caldicellulosiruptor hydrothermalis
           108]
          Length = 351

 Score = 56.5 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/201 (12%), Positives = 68/201 (33%), Gaps = 17/201 (8%)

Query: 176 VTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL--SQVVDEARKLIDNGVCEITLLGQNVN 233
           +   +     C   C +C +  +        +   ++V+ A++    G   + L      
Sbjct: 53  LRGLIEFSSYCKNDCFYCGLRRSNRQAQRYRMQEDEIVEVAKRAYQMGYRTVVLQS---- 108

Query: 234 AWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHL 293
              G+ +   K +   ++  +     +           D       A  D         +
Sbjct: 109 ---GEDMYYNKDSLCSIIRKIKSSVDVAITLSIGERSYDEYKAFKDAGADR------FLM 159

Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
             ++ ++++ +  +   +     + +  I+++     + + F++G PG+T DD    + L
Sbjct: 160 RFETSNEKLYRKYHPGMSFENRIECLKWIKNL--GYELGTGFLIGLPGQTIDDLAQDILL 217

Query: 354 VDKIGYAQAFSFKYSPRLGTP 374
           V ++         + P   TP
Sbjct: 218 VKELDADMIGIGPFIPHPQTP 238


>gi|300858954|ref|YP_003783937.1| oxygen-independent coproporphyrinogen III oxidase [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300686408|gb|ADK29330.1| oxygen-independent coproporphyrinogen III oxidase [Corynebacterium
           pseudotuberculosis FRC41]
 gi|302206654|gb|ADL10996.1| Oxygen-independent coproporphyrinogen III oxidase [Corynebacterium
           pseudotuberculosis C231]
 gi|308276897|gb|ADO26796.1| oxygen-independent Coproporphyrinogen III oxidase [Corynebacterium
           pseudotuberculosis I19]
          Length = 384

 Score = 56.5 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 46/237 (19%), Positives = 83/237 (35%), Gaps = 19/237 (8%)

Query: 186 CDKFCTFC----VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD 241
           C   C +C      P   G   S S    ++     +D    +I     +        + 
Sbjct: 17  CSSRCGYCDFNTYTPGELGS--SASPESYLNALEIELDL-AAQIRASSGDTREASTVFVG 73

Query: 242 GEKCTFS------DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPV 295
           G   +         +L ++    G+      T+     S      H  L+     + L +
Sbjct: 74  GGTPSMLGAAGLDRVLLAVRSSTGIAPGAEVTTESNPESTSPEFFHSLLESGFTRVSLGM 133

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
           QS S  +LK + R+HT            +   +  ++ D I G P ET++D R T+  V 
Sbjct: 134 QSASSSVLKVLERKHTPGRAFAAAKEALAAGFN-HVNLDMIYGTPTETNEDVRETLSRVV 192

Query: 356 KIGYAQAFSFKYSPRLGTPGSNM-----LEQVDENVKAERLLCLQKKLREQQVSFND 407
             G     ++      GT  +       L   DE+  A+R   + + LR++  S+ +
Sbjct: 193 DTGVDHVSAYSLIVEDGTAMARKVRRGELPPPDEDTYADRYWMIDQALRQEGFSWYE 249


>gi|284030610|ref|YP_003380541.1| lipoic acid synthetase [Kribbella flavida DSM 17836]
 gi|283809903|gb|ADB31742.1| lipoic acid synthetase [Kribbella flavida DSM 17836]
          Length = 321

 Score = 56.5 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/216 (15%), Positives = 69/216 (31%), Gaps = 18/216 (8%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC +    G   +    +    A  +   G+   T+ G      R    DG   
Sbjct: 81  CTRRCDFCQI--DTGKPQALDRDEPRRVAESVTKMGLRYATVTGV----ARDDLEDGGAW 134

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
            +++ +  +  +     +         + + L +       +  +    V     RI + 
Sbjct: 135 LYAETIRQIHALNPGTGVEMLAPDFNAVPEQLAEVFSSRPEVFAHNVETV----PRIFRR 190

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           +           +I + R     +   S+ I+G  GET ++    +  +   G       
Sbjct: 191 IRPGFRYERSLDVITQARDY--GLVTKSNLILGM-GETREEVSQALADLHAAGCEIITIT 247

Query: 366 KYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQ 401
           +Y  R     S     V+  V+ E  + LQ +  + 
Sbjct: 248 QYL-RP----SVRHHPVERWVRPEEFVELQAEAEQI 278


>gi|288801340|ref|ZP_06406794.1| oxygen-independent coproporphyrinogen III oxidase [Prevotella sp.
           oral taxon 299 str. F0039]
 gi|288331723|gb|EFC70207.1| oxygen-independent coproporphyrinogen III oxidase [Prevotella sp.
           oral taxon 299 str. F0039]
          Length = 456

 Score = 56.5 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/202 (14%), Positives = 72/202 (35%), Gaps = 7/202 (3%)

Query: 173 KRGVTAFLTIQEGCDKFCTFC---VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLG 229
           +  V+ +L I   C+  C +C        +G ++ + +  +  E   +  +       + 
Sbjct: 45  RNHVSFYLHIPY-CNHLCHYCGCNSYAMAKGQQVDKYVEALHREIDIVAAHIDKANRRIS 103

Query: 230 QNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMP 289
           Q ++   G           +L   +  +   +                   +   +    
Sbjct: 104 Q-IHYGGGSPTSLPIHYVKELNEHMLSLMPTIEKPEIAIECHPGYLNESDWNALCECGFT 162

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
              L +Q  ++ +LK++NR  +     +I+  +R+      I+ DF+ G P +T + F  
Sbjct: 163 RYSLGIQDFNNDVLKAVNRLPSLLPVSEILSILRA--HQATINMDFLFGLPLQTPESFEK 220

Query: 350 TMDLVDKIGYAQAFSFKYSPRL 371
           TM +  ++   +  +F Y    
Sbjct: 221 TMQMAVEMQPDRLVTFSYGHVP 242


>gi|212711633|ref|ZP_03319761.1| hypothetical protein PROVALCAL_02708 [Providencia alcalifaciens DSM
           30120]
 gi|212685735|gb|EEB45263.1| hypothetical protein PROVALCAL_02708 [Providencia alcalifaciens DSM
           30120]
          Length = 457

 Score = 56.5 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 46/266 (17%), Positives = 89/266 (33%), Gaps = 24/266 (9%)

Query: 157 EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARK 216
           +D  E+  I        R ++ ++ I   C K C FC         ++R   +  +    
Sbjct: 34  QDYNEQAFIEATQRYPDRPLSLYVHIPF-CHKLCYFC----GCNKLVTRQKHKADEYLEV 88

Query: 217 LIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS-------- 268
           +    +    LL          G  G   T+ D    +S + GL++  +  +        
Sbjct: 89  IEKEIIQRAALLKNRTVTQMHWG--GGTPTYLD-KAQVSHLVGLLKKYFHFAPDAEMSIE 145

Query: 269 -HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
             PR++   +I            L + VQ  +  +   +NR         +I R +    
Sbjct: 146 VDPREIELDMIDHLRSEG--FNRLSMGVQDFNKEVQVLVNREQDEEFIFALIKRAKET-- 201

Query: 328 DIAISS-DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQVDEN 385
               +S D I G P +T + F  T+  V ++   +   F Y+       +   ++  D  
Sbjct: 202 GFTSTSIDLIYGLPKQTPESFAFTLKKVAELAPDRLSVFNYAHLPNLFAAQRKIKDEDLP 261

Query: 386 VKAERLLCLQKKLREQQVSFNDACVG 411
              ++L  LQ  +           +G
Sbjct: 262 TAEQKLDILQDTIATLTSGGYQ-FIG 286


>gi|209522746|ref|ZP_03271304.1| oxygen-independent coproporphyrinogen III oxidase [Arthrospira
           maxima CS-328]
 gi|209496795|gb|EDZ97092.1| oxygen-independent coproporphyrinogen III oxidase [Arthrospira
           maxima CS-328]
          Length = 434

 Score = 56.5 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 47/219 (21%), Positives = 79/219 (36%), Gaps = 8/219 (3%)

Query: 167 DGGYNRKRGVTAFLTIQEGCDKFCTFC-----VVPYTRGIEISRSLSQVVDEARKLIDNG 221
           +   N +    A++ I   C + C +C     VV   R  E S  + + VD  R  I N 
Sbjct: 4   ESCINTETPTAAYVHIPF-CRRRCYYCDFAVSVVGDRRHGENSGMMEEYVDFLRSEILNQ 62

Query: 222 VCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAH 281
                 L   V    G         F  L+ ++S+  G+      +      +  L K  
Sbjct: 63  RHFGPPLK-TVFFGGGTPSLLSVQQFDRLIKTISDNLGIASDAEISVEMDPGTFDLGKLQ 121

Query: 282 GDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPG 341
           G +      + + VQ+  D +L+   R HT  +  + ID I +    +  S D I G P 
Sbjct: 122 GFVAAGANRVSVGVQAFQDDLLRLCGRSHTVADIWRAIDLI-NQVGVVNFSIDLISGLPH 180

Query: 342 ETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           +T +  + ++D V  I  A    +       T      +
Sbjct: 181 QTPEMMQESLDQVLSINPAHVSHYDLIVEPQTAFGRYYK 219


>gi|150021064|ref|YP_001306418.1| radical SAM domain-containing protein [Thermosipho melanesiensis
           BI429]
 gi|149793585|gb|ABR31033.1| Radical SAM domain protein [Thermosipho melanesiensis BI429]
          Length = 314

 Score = 56.5 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/168 (20%), Positives = 65/168 (38%), Gaps = 17/168 (10%)

Query: 185 GCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK 244
           GC   C FC   Y+   E   + S ++    K              N  A+ G    G  
Sbjct: 11  GCKNRCIFCN-QYSMTGEKMPTKSDILKIIDKYPIK----------NEIAFYGGTFTG-- 57

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304
            +    +  L  +K L      ++ P ++++  +      +  +  + + +QS  D IL 
Sbjct: 58  LSIKKQIEILESVKFLNLPIRISTRPDEITEENLHILKKYN--VKTIEIGIQSMFDDILS 115

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352
           + NR HT  +    I  ++    +  IS+  +VG P +T +    T++
Sbjct: 116 ASNRGHTKKDNINAILLLQKF--NFEISAHLMVGLPKDTKEKSLKTLN 161


>gi|104780944|ref|YP_607442.1| coproporphyrinogen III oxidase [Pseudomonas entomophila L48]
 gi|95109931|emb|CAK14636.1| coproporphyrinogen III oxidase, O2-independent, SAM and NAD(P)H
           dependent [Pseudomonas entomophila L48]
          Length = 460

 Score = 56.5 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 42/261 (16%), Positives = 90/261 (34%), Gaps = 17/261 (6%)

Query: 160 FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR------SLSQVVDE 213
           F+ L  +       R ++ ++ +   C   C +C        + +R       L Q +  
Sbjct: 38  FDLLHALRESRRATRPLSLYVHVPF-CANICYYCACNKVITKDRARAAPYLQRLEQEIQL 96

Query: 214 ARKLID--NGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPR 271
               +D    V ++   G          L     T       L +  G   +        
Sbjct: 97  IACHLDPKQVVEQLHFGGGTPTFLSHVELRQLMATLRQHFNLLDDDSGDYGIEIDPREAD 156

Query: 272 DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAI 331
             +  L++  G        + L VQ     + +++NR  +  + R +I+  R+++   +I
Sbjct: 157 WSTMGLLRELG-----FNRVSLGVQDLDPAVQRAVNRLQSLEQTRTLIEAARTLQFR-SI 210

Query: 332 SSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL-GTPGSNMLEQVDENVKAER 390
           + D I G P +T + F  T++ V ++   +   F Y+           ++  D    A +
Sbjct: 211 NLDLIYGLPKQTPEGFARTVEEVIRLQPDRLSVFNYAHLPERFMPQRRIDSADLPAPAAK 270

Query: 391 LLCLQKKLREQQVSFNDACVG 411
           L  L   + +   +     +G
Sbjct: 271 LEMLHATIDQLTAAGY-RYIG 290


>gi|332883638|gb|EGK03919.1| oxygen-independent coproporphyrinogen III oxidase [Dysgonomonas
           mossii DSM 22836]
          Length = 376

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 41/231 (17%), Positives = 82/231 (35%), Gaps = 15/231 (6%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C   C +C   YTR    S     V     ++    + +  +  ++V      G    + 
Sbjct: 11  CKTRCIYCDF-YTRTDM-SPKYDYVSALCEEI---KLRKNYIGDEDVKTVYFGGGTPSQL 65

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAH----GDLDVLMPYLHLPVQSGSDR 301
           + SD L     +    R+        + +   + AH        +    L + +QS  D 
Sbjct: 66  SESDFLRIFETLHHEFRIAPDAEITMEANPDDLSAHYLATLKEKLPFNRLSIGIQSFDDE 125

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
            LK + RRH+A + ++ +   +S+  +  IS D + G P +T   +   ++    +    
Sbjct: 126 ELKFLKRRHSADKAKEAVRMCQSLGYN-NISIDLMYGLPNQTMQIWERNLEEAIALDVQH 184

Query: 362 AFSFKYSPRLGTPGSNML-----EQVDENVKAERLLCLQKKLREQQVSFND 407
             S+      GT    +        VDE++  +    + +KL        +
Sbjct: 185 ISSYHLIYEQGTRLYRLFKMGDVNPVDEDLSVDMFSRMIEKLTAAGFDHYE 235


>gi|329960204|ref|ZP_08298646.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Bacteroides fluxus YIT 12057]
 gi|328532877|gb|EGF59654.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Bacteroides fluxus YIT 12057]
          Length = 342

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 40/175 (22%), Positives = 69/175 (39%), Gaps = 19/175 (10%)

Query: 219 DNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLI 278
           D  V  I   G   +   G+        FS +  ++ +  GL      T       D L 
Sbjct: 14  DEPVKTIYFGGGTPSQLSGED-------FSSIFRTIEDTYGLEHAEEITLEAN--PDDLT 64

Query: 279 KAHGDLDVLMPY--LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA-ISSDF 335
           + +  +   +P+  + + +Q+  D  LK +NRRH + +    ++R R        IS D 
Sbjct: 65  EEYAAMLQALPFNRISMGIQTFDDATLKLLNRRHNSAQAITAVERCRQA--GFRNISIDL 122

Query: 336 IVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE-----QVDEN 385
           I G PGETD  +   +     +      ++  +   GT    ML+     +VDE+
Sbjct: 123 IYGLPGETDKRWAHDLQQAVSLNVEHISAYHLTYEKGTRIYEMLQAHRIREVDED 177


>gi|302331204|gb|ADL21398.1| Coproporphyrinogen III oxidase [Corynebacterium pseudotuberculosis
           1002]
          Length = 384

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 46/237 (19%), Positives = 83/237 (35%), Gaps = 19/237 (8%)

Query: 186 CDKFCTFC----VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD 241
           C   C +C      P   G   S S    ++     +D    +I     +        + 
Sbjct: 17  CSSRCGYCDFNTYTPGELGS--SASPESYLNALEIELDL-AAQIRASSGDTREASTVFVG 73

Query: 242 GEKCTFS------DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPV 295
           G   +         +L ++    G+      T+     S      H  L+     + L +
Sbjct: 74  GGTPSMLGAAGLDRVLLAVRSSTGIAPGAEVTTESNPESTSPEFFHSLLESGFTRVSLGM 133

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
           QS S  +LK + R+HT            +   +  ++ D I G P ET++D R T+  V 
Sbjct: 134 QSASSSVLKVLERKHTPGRAFAAAKEALAAGFN-HVNLDMIYGTPTETNEDVRETLSRVV 192

Query: 356 KIGYAQAFSFKYSPRLGTPGSNM-----LEQVDENVKAERLLCLQKKLREQQVSFND 407
             G     ++      GT  +       L   DE+  A+R   + + LR++  S+ +
Sbjct: 193 DTGVDHVSAYSLIVEDGTAMARKVRRGELPPPDEDTYADRYWMIDQALRQEGFSWYE 249


>gi|297673344|ref|XP_002814728.1| PREDICTED: lipoyl synthase, mitochondrial-like isoform 1 [Pongo
           abelii]
          Length = 372

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 36/186 (19%), Positives = 67/186 (36%), Gaps = 15/186 (8%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLS--QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
           C + C FC V   R       L   +  + A+ + + G+  + L   +    R    DG 
Sbjct: 137 CTRGCRFCSVKTARNP---PPLDASEPYNTAKAIAEWGLDYVVLTSVD----RDDMPDGG 189

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPR-DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
               +  +  L E    + +   T   R D+      A   LDV    +    +  S   
Sbjct: 190 AEHIAKTVSYLKERNPKILVECLTPDFRGDLKAIEKVALSGLDVYAHNVETVPELQS--- 246

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
            K  + R    +  +++   + V+PD+   +  ++G  GE D+   ATM  + +      
Sbjct: 247 -KVRDPRANFDQSLRVLKHAKKVQPDVISKTSIMLGL-GENDEQVYATMKALREADVDCL 304

Query: 363 FSFKYS 368
              +Y 
Sbjct: 305 TLGQYM 310


>gi|296413506|ref|XP_002836453.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295630274|emb|CAZ80644.1| unnamed protein product [Tuber melanosporum]
          Length = 426

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 36/213 (16%), Positives = 78/213 (36%), Gaps = 9/213 (4%)

Query: 156 VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEAR 215
            E +   +S   GG ++       + + + C + C FC V  +R         +    A 
Sbjct: 143 EEARCPNISTCWGGTDKSSATATIMLMGDTCTRGCRFCSVKTSRTPA-PLDPHEPEHTAE 201

Query: 216 KLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSD 275
            L   G+  + L   +    R    DG    F++ +  + +  G + +   T       D
Sbjct: 202 ALRRWGLGYVVLTSVD----RDDLPDGGAAHFAETVAKIKQRAGHILVEALTGDFMGDLD 257

Query: 276 CLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDF 335
           C+ +       +  +    V+  +  +     RR T  +  ++++  + VR  +   +  
Sbjct: 258 CVSRVASSGLDVYAHNVETVEGLTPYVRD---RRATFRQSLKVLEAAKGVREGLITKTSI 314

Query: 336 IVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
           ++G  GET ++   T+  + KI        +Y 
Sbjct: 315 MLGL-GETQEEVLDTLRELRKINVDVVTFGQYM 346


>gi|258651797|ref|YP_003200953.1| oxygen-independent coproporphyrinogen III oxidase [Nakamurella
           multipartita DSM 44233]
 gi|258555022|gb|ACV77964.1| oxygen-independent coproporphyrinogen III oxidase [Nakamurella
           multipartita DSM 44233]
          Length = 411

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 53/277 (19%), Positives = 91/277 (32%), Gaps = 27/277 (9%)

Query: 139 LLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV-PY 197
           ++   R    + D D    D         G  +R       +     C   C +C    Y
Sbjct: 1   MVNTGRVPSTLPDGDPVPPDGSLPDQARQGAADRTLSFYVHVPF---CATRCGYCDFNTY 57

Query: 198 TRGIEISR-SLSQVVDEARKLIDNGVCEI--------TLLGQNVNAWRGKGLDGEKCTFS 248
           T G   S  S    +D A   ++     +          +G    +  G          +
Sbjct: 58  TAGELGSAASPQSWLDAALAEVELAARVLGRGRTVSTVFVGGGTPSLVGAEP------LT 111

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
            +L ++ E  GL      ++     S                L L +QS S R+L  ++R
Sbjct: 112 RILTAIDERFGLADDAEVSTEANPESTDPALLGALRAAGFTRLSLGLQSTSRRVLTVLDR 171

Query: 309 RHTAYEYRQIIDRI-RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
            HT      ++    +     + +  D I G PGETD +F  ++  V   G     ++  
Sbjct: 172 THTPGRALDVVRWAGQEGFEHVNL--DLIYGTPGETDAEFTDSLAAVIASGVDHVSAYSL 229

Query: 368 SPRLGTPGSNMLEQ-----VDENVKAERLLCLQKKLR 399
               GT  +   ++      DE+V A+R L   + L 
Sbjct: 230 IVEPGTRLARQFDRGVLPMPDEDVLADRYLLADELLT 266


>gi|289809829|ref|ZP_06540458.1| hypothetical protein Salmonellaentericaenterica_37662 [Salmonella
           enterica subsp. enterica serovar Typhi str. AG3]
          Length = 106

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 10/76 (13%)

Query: 59  MDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEIL 118
            DDAD++++NTC   + A ++    +G              +  V+V GC+  A+ ++I 
Sbjct: 1   YDDADMVIVNTCGFIDSAVQESLEAIGEA---------LNENGKVIVTGCLG-AKEDQIR 50

Query: 119 RRSPIVNVVVGPQTYY 134
              P V  + GP +Y 
Sbjct: 51  EVHPKVLEITGPHSYE 66


>gi|168179393|ref|ZP_02614057.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Clostridium botulinum NCTC 2916]
 gi|182669638|gb|EDT81614.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Clostridium botulinum NCTC 2916]
          Length = 380

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/199 (16%), Positives = 74/199 (37%), Gaps = 14/199 (7%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C++C        E    +  V   ++++++N   +I      +    G        
Sbjct: 19  CMQKCSYCDFTSYSKKE-DLMMEYVKALSKEIVNNTKNKIIKT---IFIGGGTPTYLSLE 74

Query: 246 TFSDLLYSLSEIKGLVRLRYTTS----HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
             + L  +L  I     + +T         +    L+K+ G     +  L + +QS  + 
Sbjct: 75  ALNILKNTLKTIDKKENIEFTVEGNPGTFTEKKLKLLKSMG-----VNRLSIGLQSSKNS 129

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
           +LK++ R H+  ++       R    +  I+ D +   P ++ DD++ T+  V  +    
Sbjct: 130 LLKTLGRIHSFEDFAHSFKMARKEGFN-NINVDLMFALPNQSLDDWKETLLTVVDLSPEH 188

Query: 362 AFSFKYSPRLGTPGSNMLE 380
              +      GT   N+ +
Sbjct: 189 LSCYSLIIEEGTNFYNLYK 207


>gi|330444424|ref|YP_004377410.1| oxygen-independent coproporphyrinogen III oxidase [Chlamydophila
           pecorum E58]
 gi|328807534|gb|AEB41707.1| oxygen-independent coproporphyrinogen III oxidase, putative
           [Chlamydophila pecorum E58]
          Length = 373

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 78/220 (35%), Gaps = 14/220 (6%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C K C +C   +      S     V   ++ +I  G  ++  L  + +        G   
Sbjct: 16  CSKKCHYC--SFYTIPYKS---ETVELYSQAIILEGEHKLAPLR-DSHYIETVFFGGGTP 69

Query: 246 TF---SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
           +    S L   LS++    +     ++P +++   + A     +    + L VQ+  D  
Sbjct: 70  SLLSPSQLNNILSKLAPNAKEITLEANPENITKEYVDALRHTPI--NRISLGVQTFDDSQ 127

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIA-ISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
           L+ + R H++    + +  + S     + +S D + G P +T + F + ++   K+    
Sbjct: 128 LQLLGRTHSSSHAIEALSLLTSW--GFSNLSIDLMYGLPTQTLEGFLSDLNRALKLPLTH 185

Query: 362 AFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQ 401
              +  +    T        +      E  L     L E+
Sbjct: 186 LSLYNLTIDPHTSFYKHRNALAPTFAKEESLAAMSSLAEE 225


>gi|295105851|emb|CBL03394.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Gordonibacter pamelaeae 7-10-1-b]
          Length = 369

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 50/236 (21%), Positives = 86/236 (36%), Gaps = 24/236 (10%)

Query: 186 CDKFCTFC-----VVPYTRGIEISRSLSQVVDEARKLIDNG---VCEITLLGQNVNAWRG 237
           C + C +C      VP     EI   +  +  + R+    G     E   LG    +  G
Sbjct: 16  CVRRCGYCDFATSAVP-ADAPEIDAYVEDLCLQIRRKAKEGELGALETVYLGGGTPSHIG 74

Query: 238 KGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQS 297
                     S LLY+LS    L      T      S           + +  L + VQS
Sbjct: 75  ------LARLSMLLYTLSLSMHLTPEVECTMEANPESLTERMVRDAWALGVNRLSIGVQS 128

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
             D +L  + R H+A + R+ I+   +   ++++  D + G PG+  + F A++     +
Sbjct: 129 FDDEVLAVLGRAHSADDARRAIEAAHTRFENVSV--DLMCGIPGQGAESFEASVREAAAL 186

Query: 358 GYAQAFSFKYSPRLGTP------GSNMLEQVDENVKAERLLCLQKKLREQQVSFND 407
           G A    +  +    TP        +M E  D++V+A  +      L E      +
Sbjct: 187 GAAHVSVYPLTIEAHTPFDAAVLAGDMEEP-DDDVEAAHMEIAACVLAEAGYERYE 241


>gi|313888876|ref|ZP_07822536.1| radical SAM protein, TIGR01212 family [Peptoniphilus harei
           ACS-146-V-Sch2b]
 gi|312845049|gb|EFR32450.1| radical SAM protein, TIGR01212 family [Peptoniphilus harei
           ACS-146-V-Sch2b]
          Length = 302

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/208 (15%), Positives = 70/208 (33%), Gaps = 30/208 (14%)

Query: 230 QNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMP 289
           QN         D ++     L+  +  +    R  Y      D  + L            
Sbjct: 83  QNFTNTYMPFEDFKRVIEESLIEDVVGLSISTRPDYLPKRHLDYLEEL------NKKYFV 136

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
            L + +Q+ +   LK +NR H   E+     +++    ++ I +  IVG P + D D   
Sbjct: 137 TLEIGLQTANYHSLKKLNRGHGLAEFIDAAIKLKKR--NLNICTHMIVGLPWDDDLDIVE 194

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDAC 409
              +++ +   +          GT    M E              + ++    +      
Sbjct: 195 GAKILNALSVDEVKLHALYILKGTALGKMYE--------------RGEIEPISLEDYKKK 240

Query: 410 VGQIIEVLIEKHGKEK---GKLVGRSPW 434
           V     +L  ++ K+     +++GR+P+
Sbjct: 241 V-----ILFLRNLKDDIIVERIIGRAPY 263


>gi|261380907|ref|ZP_05985480.1| putative oxygen independent coproporphyrinogen III oxidase
           [Neisseria subflava NJ9703]
 gi|284796156|gb|EFC51503.1| putative oxygen independent coproporphyrinogen III oxidase
           [Neisseria subflava NJ9703]
          Length = 606

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/209 (14%), Positives = 71/209 (33%), Gaps = 28/209 (13%)

Query: 186 CDKFCTFC-VVPYTRGIEIS-----RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
           C   C FC           S     + + ++  EA      G       G          
Sbjct: 62  CANHCVFCGFYRNAWKDSQSSVYTDKIIEEMAAEAEVRTGKGKIRAVYFGGGTPT----- 116

Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMS-------DCLIKAHGDLDVLMPYLH 292
                   + L   L  +          +   + +         L KA   L+     + 
Sbjct: 117 --------ALLTEDLVRLICACYQYLPLAEDCEFTIEGRMSHFDLEKAQACLEAGANRIS 168

Query: 293 LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352
           + VQ+ +  I + + R+H+  E  + + ++  +  D  I +D + G P +TD+ ++  + 
Sbjct: 169 IGVQTFNTAIRRRLGRKHSGDEAFEYLAKLCEL--DAVIVADLMFGLPNQTDEVWQNDIA 226

Query: 353 LVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
              ++  +   ++ ++     P + M+E+
Sbjct: 227 RAAELPLSGLDTYAFNLYPMLPINRMIEK 255


>gi|28869197|ref|NP_791816.1| oxygen-independent coproporphyrinogen III oxidase [Pseudomonas
           syringae pv. tomato str. DC3000]
 gi|28852437|gb|AAO55511.1| oxygen-independent coproporphyrinogen III oxidase [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 460

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 80/220 (36%), Gaps = 15/220 (6%)

Query: 160 FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC----VVPYTRGIEIS---RSLSQVVD 212
           FE L  +      +R ++ ++ I   C   C +C    V+   RG   +   R   ++  
Sbjct: 38  FELLHALRESRKARRPLSLYVHIPF-CANICYYCACNKVITKDRGRAQAYLQRLEHEIRM 96

Query: 213 EARKLI-DNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPR 271
            A  L     V ++ L G          L             L +  G   +        
Sbjct: 97  LACHLAPSQVVEQLHLGGGTPTFLSHDELRRLMARLRAHFTLLEDDSGDYGIEIDPREAD 156

Query: 272 DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAI 331
             S  L++  G        + L VQ     + +++NR  +  E R I++  R+++   ++
Sbjct: 157 WASMGLLRELG-----FNRVSLGVQDLDPTVQRAINRMQSLEETRAIVEAARTLQFR-SV 210

Query: 332 SSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
           + D I G P +T   F  T+D + ++   +   F Y+   
Sbjct: 211 NIDLIYGLPRQTPQGFSRTVDEIIELQPDRLSVFNYAHLP 250


>gi|238791634|ref|ZP_04635272.1| Lipoyl synthase [Yersinia intermedia ATCC 29909]
 gi|238729250|gb|EEQ20766.1| Lipoyl synthase [Yersinia intermedia ATCC 29909]
          Length = 321

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 44/257 (17%), Positives = 86/257 (33%), Gaps = 17/257 (6%)

Query: 118 LRRSPIVNVVVGPQTYYRLPELLERAR-------FGKRVVDTDYSVEDKFERLSIVDGGY 170
           +   PI  VV   Q   R PE ++           G +       +    E  S  +   
Sbjct: 19  MALIPIKTVVTERQELLRKPEWMKIKLPADSSRIQGIKAAMRKNGLHSVCEEASCPNLSE 78

Query: 171 NRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQ 230
               G   F+ +   C + C FC V    G  ++   ++    A+ + D G+  + +   
Sbjct: 79  CFNHGTATFMILGAICTRRCPFCDV--AHGRPVTPDANEPEKLAQTIKDMGLRYVVITSV 136

Query: 231 NVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY 290
           +    R    DG    F+D + ++      +++       R   D  +          P 
Sbjct: 137 D----RDDLRDGGAQHFADCISAIRAKNPTIKIETLVPDFRGRMDRALDILTVTP---PD 189

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
           +         R+ + +          ++++R +   PDI   S  +VG  GET+ +    
Sbjct: 190 VFNHNLENVPRVYRQVRPGANYEWSLKLLERFKEAHPDIPTKSGLMVGL-GETNAEIVEV 248

Query: 351 MDLVDKIGYAQAFSFKY 367
           M  + + G       +Y
Sbjct: 249 MHDLRRHGVTMLTLGQY 265


>gi|269797939|ref|YP_003311839.1| oxygen-independent coproporphyrinogen III oxidase [Veillonella
           parvula DSM 2008]
 gi|294791820|ref|ZP_06756968.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Veillonella sp. 6_1_27]
 gi|269094568|gb|ACZ24559.1| oxygen-independent coproporphyrinogen III oxidase [Veillonella
           parvula DSM 2008]
 gi|294457050|gb|EFG25412.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Veillonella sp. 6_1_27]
          Length = 394

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/233 (14%), Positives = 80/233 (34%), Gaps = 16/233 (6%)

Query: 186 CDKFCTFCVVPYTRGIEISRS--LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
           C + C +C  P  + ++      +  +V E    +           + ++     G    
Sbjct: 25  CKQKCMYCDFPAYQNLQDYYETYVYALVQEIDLWVSEHPES---TSKAIDTIYFGGGTPT 81

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSD--CLIKAHGDLDVL-MPYLHLPVQSGSD 300
           + +   L   L +IK    +        + +     +     L  L    +   VQ+  D
Sbjct: 82  ELSIQQLQMILDKIKNTFTITDDCHMTIESNPGEVNLHYLTKLVKLGFNRISFGVQTFDD 141

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIA-ISSDFIVGFPGETDDDFRATMDLVDKIGY 359
           ++L  ++R H   + +Q +   +        I+ D I G P +T +D +  +D+V  +  
Sbjct: 142 KLLTMLHRSHNGEQAKQAVYDAKEA--GFTDINIDLIYGLPRQTLEDIQYNLDIVKDLPI 199

Query: 360 AQAFSFKYSPRLGTPGSNMLEQ----VDENVKAE-RLLCLQKKLREQQVSFND 407
               ++     +GT   +++++    +      E     +   L+       +
Sbjct: 200 NHISTYGLQVEVGTYLYHLVQKNLISIPSETIDESMYDMMMDGLKALGFERYE 252


>gi|45201327|ref|NP_986897.1| AGR231Cp [Ashbya gossypii ATCC 10895]
 gi|74691731|sp|Q74ZH6|LIPA_ASHGO RecName: Full=Lipoyl synthase, mitochondrial; AltName: Full=Lipoate
           synthase; Short=LS; Short=Lip-syn; AltName: Full=Lipoic
           acid synthase; Flags: Precursor
 gi|44986181|gb|AAS54721.1| AGR231Cp [Ashbya gossypii ATCC 10895]
          Length = 369

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 37/236 (15%), Positives = 82/236 (34%), Gaps = 16/236 (6%)

Query: 167 DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEIT 226
             G N+       + + + C + C FC V   R         +  + A  +   G+  + 
Sbjct: 117 CWGGNKGSATATIMLLGDTCTRGCRFCSVKTNRTPAK-PDPKEPENTAEAISRWGLGYVV 175

Query: 227 LLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV 286
           L   +    R    DG     ++ +  + +    + +       R  +  ++       +
Sbjct: 176 LTMVD----RDDLPDGGAHHLAETVQRIKQKAPHILVETLAGDFRG-NLEMVDVMARSGL 230

Query: 287 -LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDD 345
            +  +    V++ +  +     RR T  +   ++ R +   P +   +  ++G  GETD+
Sbjct: 231 DVYAHNVETVEALTPHVRD---RRATYQQSLSVLKRAKQTVPTLVTKTSIMLGM-GETDE 286

Query: 346 DFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQ 401
               TM  +  +        +Y  R     +    +V E VK E+    ++K  E 
Sbjct: 287 QVLQTMKDLRAVDCDVVTFGQYM-RP----TRRHMKVVEYVKPEKFDYWKEKALEL 337


>gi|39995323|ref|NP_951274.1| radical SAM domain-containing protein [Geobacter sulfurreducens
           PCA]
 gi|39982085|gb|AAR33547.1| radical SAM domain protein [Geobacter sulfurreducens PCA]
          Length = 429

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 36/217 (16%), Positives = 76/217 (35%), Gaps = 24/217 (11%)

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCD-KFCTFCVVPYTRGIEISRSLSQVVD 212
           + V   ++ L + D       G+    +   GC    C+FC           R++ +V+ 
Sbjct: 157 HQVPPAYDPLPLHDYLSP---GLVLPYSAAGGCYWNHCSFCPERAEGNAYHPRAVQRVLA 213

Query: 213 EARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
           +   L+      +  L  N  +             S L    +   G+    +     + 
Sbjct: 214 DLETLVSRHQPALLHLLDNAVSP------------SLLQGMAAAPPGVPWYGFARVDEQL 261

Query: 273 MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAIS 332
                 +A      +M  L L ++SG   +L  +++        + +  + +    IA+ 
Sbjct: 262 ADPDFCRALRRSGCVM--LKLGLESGDQGVLDRLHKGIDLATAARALRSLSAA--GIAVY 317

Query: 333 SDFIVGFPGETDDDFRATMDLV----DKIGYAQAFSF 365
           +  + G P ET++  R T+  V    ++IG+     F
Sbjct: 318 AYLLFGTPAETEEAARRTLAFVAEHREEIGFLNLAVF 354


>gi|329954435|ref|ZP_08295526.1| uncharacterized radical SAM protein YgiQ [Bacteroides clarus YIT
           12056]
 gi|328527403|gb|EGF54400.1| uncharacterized radical SAM protein YgiQ [Bacteroides clarus YIT
           12056]
          Length = 601

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 45/310 (14%), Positives = 98/310 (31%), Gaps = 62/310 (20%)

Query: 126 VVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNR-------KRGVTA 178
            +      Y    +L+       VV+  Y    + E     D  Y R        + + A
Sbjct: 236 HIEEESNKYAASRILQTVGRQTVVVNPPYPPLTEAELDRSFDLPYTRLPHPKYKGKRIPA 295

Query: 179 F------LTIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVCEITLL--- 228
           +      + I  GC   C FC +   +G   +SRS   ++ E + +++    +  L    
Sbjct: 296 YDMIKFSVNIHRGCFGGCAFCTISAHQGKFIVSRSKESILKEVKAVMELPDFKGYLSDLG 355

Query: 229 GQNVNAWRGKG----------------------LDGEKCTFSDLLYSLSEIKGLVRLRYT 266
           G + N ++ +G                      L+ +     D+ +++  + G+ +    
Sbjct: 356 GPSANMYKMRGRNEAVCKKCKRPSCIHPKVCPNLNTDHSPLLDIYHAVDSLPGIKKSFIG 415

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLH----------------LPVQSGSDRILKSMNRRH 310
                 +   L+                              +  +  S+R+L  M +  
Sbjct: 416 ----SGVRYDLLLHQSKDPKTNKSTQEYTRELIARHVSGRLKVAPEHTSERVLDIMRKPP 471

Query: 311 TAYE--YRQIIDRI-RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
            +    +++I DRI R       +   FI   PG  ++D      +  ++ +       +
Sbjct: 472 FSQFGEFKKIFDRINREEGLRQQLIPYFISSHPGCKEEDMAELAVITKRLDFHLEQVQDF 531

Query: 368 SPRLGTPGSN 377
           +P   T  + 
Sbjct: 532 TPTPMTVATE 541


>gi|114593627|ref|XP_001141481.1| PREDICTED: lipoyl synthase, mitochondrial isoform 1 [Pan
           troglodytes]
          Length = 322

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 36/186 (19%), Positives = 67/186 (36%), Gaps = 15/186 (8%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLS--QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
           C + C FC V   R       L   +  + A+ + + G+  + L   +    R    DG 
Sbjct: 137 CTRGCRFCSVKTARNP---PPLDASEPYNTAKAIAEWGLDYVVLTSVD----RDDMPDGG 189

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPR-DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
               +  +  L E    + +   T   R D+      A   LDV    +    +  S   
Sbjct: 190 AEHIAKTVSYLKERNPKILVECLTPDFRGDLKAIEKVALSGLDVYAHNVETVPELQS--- 246

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
            K  + R    +  +++   + V+PD+   +  ++G  GE D+   ATM  + +      
Sbjct: 247 -KVRDPRANFDQSLRVLKHAKKVQPDVISKTSIMLGL-GENDEQVYATMKALREADVDCL 304

Query: 363 FSFKYS 368
              +Y 
Sbjct: 305 TLGQYM 310


>gi|332981631|ref|YP_004463072.1| Radical SAM domain-containing protein [Mahella australiensis 50-1
           BON]
 gi|332699309|gb|AEE96250.1| Radical SAM domain protein [Mahella australiensis 50-1 BON]
          Length = 360

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 37/217 (17%), Positives = 66/217 (30%), Gaps = 18/217 (8%)

Query: 169 GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLL 228
              RKR +      Q+GC   C +C   Y            ++ +A    D  + +  L 
Sbjct: 1   MKKRKRYIIPVFIPQQGCPFQCIYCN-QYAITGMR----QDILSQA----DKILRQAILT 51

Query: 229 GQNVNAWRGKGLDGEKCTF-SDLLYSLSEIKGLVRLRYTTSHPR-----DMSDCLIKAHG 282
             +          G       D+  SL ++    R     +  R     D  +  I    
Sbjct: 52  APSGTDIEVAFYGGTFTAMPQDVQESLLKLAASYRQYINITDIRLSTRPDYINPPILDML 111

Query: 283 DLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGE 342
                +  + L  QS  D +L +  R H++ +       I+    DI +    +VG P +
Sbjct: 112 SH-NGVTVIELGAQSMDDAVLHASGRGHSSKDVEDAAYLIKEY--DIKLGIQLMVGLPSD 168

Query: 343 TDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
                  ++     IG      +       TP   + 
Sbjct: 169 DAGKDMRSVIKAIDIGADFIRIYPTLVIKDTPLERLY 205


>gi|323480535|gb|ADX79974.1| oxygen-independent coproporphyrinogen III oxidase 1 [Enterococcus
           faecalis 62]
          Length = 394

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 47/253 (18%), Positives = 96/253 (37%), Gaps = 26/253 (10%)

Query: 177 TAFLTIQEGCDKFCTFCVV--PYTRGIEISRSLSQVVDEARKLI----DNGVCEITLLGQ 230
           +A++ I   C+  C +C     +  G  +   +  ++ E +       +  +  I + G 
Sbjct: 17  SAYIHIPF-CEHICYYCDFNKVFLEGQPVDEYIQSLLKEIQLTQALYPEQEMKTIYIGGG 75

Query: 231 NVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY 290
              +   K LD        +   L+            ++P D++   ++   +    +  
Sbjct: 76  TPTSLSAKQLD---VLLKGVREQLT--FDDQNEFTVEANPGDLTQEKLQVMKNYG--VNR 128

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI-RSVRPDIAISSDFIVGFPGETDDDFRA 349
           L + VQ+  DR+LK + R+HTA +  + +  + +    +++I  D I   PG+T + FR 
Sbjct: 129 LSMGVQTFDDRLLKKIGRKHTAADVYETMKFLEKENFTNVSI--DLIYALPGQTLESFRD 186

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE----QVDENVKA-----ERLLCLQKKLRE 400
           T+     +       +       T   N +     Q+ E         E +  ++KK R 
Sbjct: 187 TLTRALALDLPHYSLYSLILENKTMFMNWVRQGRLQLPEEEIEAQMFDETIEAMEKKGRH 246

Query: 401 QQVSFNDACVGQI 413
           Q    N A  G+ 
Sbjct: 247 QYEVSNFALTGKE 259


>gi|226355592|ref|YP_002785332.1| lipoyl synthase [Deinococcus deserti VCD115]
 gi|226317582|gb|ACO45578.1| putative lipoyl synthase (Lipoic acid synthase) [Deinococcus
           deserti VCD115]
          Length = 326

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 74/220 (33%), Gaps = 9/220 (4%)

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
           R +  ++ +    E     + G    RG   F+ +   C + C FC V     +     L
Sbjct: 43  RKIVKEHRLHTVCEEAMCPNIGECWSRGTATFMLMGHICTRACRFCAVDTGNPMGR-LDL 101

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
            +    A+ +   G+  + L   +    R    DG    F+  + ++  +    R+   T
Sbjct: 102 DEPQGVAQSVQLMGLKYVVLTSVD----RDDLPDGGAYHFAKTVQAIKRLNPGTRVEALT 157

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
                 + C +    D  V     +L         ++ +   +   +   ++   +  RP
Sbjct: 158 PDFGGNTHC-VDLVLDSGVDTYAQNLETVRRLTHPVRDIRANY--DQTLAVLAHAKQARP 214

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           D+   +  ++G  GET ++    M      G       +Y
Sbjct: 215 DVITKTSIMLGL-GETREEISEAMRDCRAAGVDVLTFGQY 253


>gi|153003609|ref|YP_001377934.1| radical SAM domain-containing protein [Anaeromyxobacter sp.
           Fw109-5]
 gi|152027182|gb|ABS24950.1| Radical SAM domain protein [Anaeromyxobacter sp. Fw109-5]
          Length = 897

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 39/228 (17%), Positives = 81/228 (35%), Gaps = 28/228 (12%)

Query: 179 FLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLI-DNGVCEITLLGQNVNAWRG 237
            + IQ GC + C FC V         R   QV+  A   +  +G  E+ LL   +++   
Sbjct: 271 PIEIQRGCTRGCRFCQVGMITRPTRQRDPKQVLRLAETGLGASGYEEVGLLS--LSSGDY 328

Query: 238 KGLDGEKCTFSDLLYSLSEIKGL-VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQ 296
             L+G       L   L+  +G  + +   +     M+D L +    +        L  +
Sbjct: 329 APLNG------LLDDFLARWEGEKIGMSLPSLRTETMNDSLAQKIARIRK--TGFTLAPE 380

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
           + ++R+   +N+ +   +  + ++ +      + +   F++G P E D+D  A  +L  +
Sbjct: 381 AATERMRAVINKGNREEDLLRAVESVFQNGWSL-LKLYFMIGLPQERDEDVVAIAELARR 439

Query: 357 IGYA--------------QAFSFKYSPRLGTPGSNMLEQVDENVKAER 390
                                +  + P+  TP       +       R
Sbjct: 440 CLSTARRALPKGQGSAAIHLGASTFVPKPFTP-FQWEAMISPEETRRR 486


>gi|91780328|ref|YP_555535.1| radical SAM domain/B12 binding domain-containing protein
           [Burkholderia xenovorans LB400]
 gi|91692988|gb|ABE36185.1| Putative radical SAM domain/B12 binding domain protein
           [Burkholderia xenovorans LB400]
          Length = 513

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 71/420 (16%), Positives = 128/420 (30%), Gaps = 77/420 (18%)

Query: 42  LRMEDMFFSQGYER------VNSMDDADLIVLN-----TCHIREKAAEKVYSFLGRIRNL 90
             +  +    G+E       V +  D   ++ N      C      +    + +  I +L
Sbjct: 26  ETVAAVLREAGHEVRLIDLQVETHRDLHRLIRNWQPDAVCF-----SGNYLANIPEIVDL 80

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPI-VNVVVGPQTYYRLPELLERARFGKRV 149
             S  ++     V V G        +ILR +   V+ V+  +    +  LLE A  G  +
Sbjct: 81  AKSVKEKQPRCFVFVGGHSVSFTAADILRHAEGAVDCVLKGEGEASVVALLEAASHGADL 140

Query: 150 VDT--------DYSVEDKFERLSIVDGGYNRKRG----------VTAFLTIQEGCDKFCT 191
           +          +       E L  V    +  R             A +    GC   CT
Sbjct: 141 LQIPGAVTQHGEGPPPHFVESLDPVRPARDLLRHRRKYFIGTLDPCASIEFARGCPWDCT 200

Query: 192 FCVVPYTRGIE-ISRSLSQV---VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTF 247
           FC      G    +RS   V   +   R+     V ++  +  +     GK +       
Sbjct: 201 FCSAWTFYGRSYRARSPEVVAGELASIREPGVFIVDDVAFVHADHGMEIGKAVQRRGIRK 260

Query: 248 SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307
              L +  ++    R  +             +  G     + Y+ + +++     LK+  
Sbjct: 261 KYYLETRGDVLLRNREVF----------EFWRGLG-----LQYMFIGMEAIDAEGLKAFR 305

Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           +R       + +   RS+   I ++ + I   P    D F A      +I          
Sbjct: 306 KRINLDRNFEALAFARSL--GITVAINLIAD-PDWDHDRFEAVRQWCLEIP-EIVNISVN 361

Query: 368 SPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQV----------SFNDACVGQIIEVL 417
           +P  GT    + EQ        RL  L  +L + Q            F    V +  +VL
Sbjct: 362 TPYPGTE-IWLREQ-------RRLTSLDYRLYDIQHAVLPTRLPLPEFYAELV-RTQQVL 412


>gi|37577164|ref|NP_919433.1| lipoyl synthase, mitochondrial isoform 2 precursor [Homo sapiens]
 gi|119613339|gb|EAW92933.1| lipoic acid synthetase, isoform CRA_b [Homo sapiens]
          Length = 322

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 36/186 (19%), Positives = 67/186 (36%), Gaps = 15/186 (8%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLS--QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
           C + C FC V   R       L   +  + A+ + + G+  + L   +    R    DG 
Sbjct: 137 CTRGCRFCSVKTARNP---PPLDASEPYNTAKAIAEWGLDYVVLTSVD----RDDMPDGG 189

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPR-DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
               +  +  L E    + +   T   R D+      A   LDV    +    +  S   
Sbjct: 190 AEHIAKTVSYLKERNPKILVECLTPDFRGDLKAIEKVALSGLDVYAHNVETVPELQS--- 246

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
            K  + R    +  +++   + V+PD+   +  ++G  GE D+   ATM  + +      
Sbjct: 247 -KVRDPRANFDQSLRVLKHAKKVQPDVISKTSIMLGL-GENDEQVYATMKALREADVDCL 304

Query: 363 FSFKYS 368
              +Y 
Sbjct: 305 TLGQYM 310


>gi|167746628|ref|ZP_02418755.1| hypothetical protein ANACAC_01339 [Anaerostipes caccae DSM 14662]
 gi|317471456|ref|ZP_07930808.1| radical SAM superfamily protein [Anaerostipes sp. 3_2_56FAA]
 gi|167653588|gb|EDR97717.1| hypothetical protein ANACAC_01339 [Anaerostipes caccae DSM 14662]
 gi|316901071|gb|EFV23033.1| radical SAM superfamily protein [Anaerostipes sp. 3_2_56FAA]
          Length = 479

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 36/205 (17%), Positives = 70/205 (34%), Gaps = 17/205 (8%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEK 244
           C   C +C          S  +S   + A   +D  + EI  +G+         L  G  
Sbjct: 172 CPSTCLYCSFT-------SYPISAYREYADHYLDALIREIHYIGEQYRDREMISLYVGGG 224

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCL-----IKAHG---DLDVLMPYLHLPVQ 296
              +     L  + G ++  +     R+++        I A       +  +  + +  Q
Sbjct: 225 TPTTLSPEQLERLFGELKRCFDFGRVREITVEAGRPDSITAEKLSVLSENGVTRISINPQ 284

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
           + ++  L+ + R HTA +        R    D  I+ D I G PGE   +   T   + +
Sbjct: 285 TMNNDTLRKIGRNHTAEDVADSFHAARKAGFD-NINMDTICGLPGEGIRELETTFKALGE 343

Query: 357 IGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +          + +   P + M +Q
Sbjct: 344 LEPDSITVHALAIKRSAPLNQMRDQ 368


>gi|50955096|ref|YP_062384.1| coproporphyrinogen III oxidase [Leifsonia xyli subsp. xyli str.
           CTCB07]
 gi|50951578|gb|AAT89279.1| oxygen-independent coproporphyrinogen III oxidase protein
           [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 413

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 40/236 (16%), Positives = 71/236 (30%), Gaps = 34/236 (14%)

Query: 168 GGYNRKRGVTAFLTIQEGCDKFCTFCVV-----PYTRGIEISRSLSQVVDEARKLIDNGV 222
           G  +R  GV   +     C   C +C          RG+  +      V E R       
Sbjct: 24  GSADRDFGVYLHVPF---CRVRCGYCDFNTYTATEVRGVSQTDYADHAVAEVRFAARALG 80

Query: 223 CEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHG 282
                       + G G             +L  + G VR ++      +++        
Sbjct: 81  RSGLPARPVSTVFFGGGTPT-----LLPPEALGRMLGAVREQWGFVPQAEVTTE-----A 130

Query: 283 DLDVL------------MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330
           + D +               +   +QS   R+L ++ R H       ++   R     + 
Sbjct: 131 NPDSVDAADLLRLAAAGFTRVSFGMQSAVPRVLATLERTHDPERIPLVVQWARDA--GLQ 188

Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM--LEQVDE 384
           +S D I G PGET  D+  ++D           ++      GT  +      Q+ E
Sbjct: 189 VSLDLIYGTPGETLGDWERSLDTALSCVPDHLSAYSLIVEPGTKLARQIAAGQLPE 244


>gi|159904164|ref|YP_001551508.1| Fe-S oxidoreductase [Prochlorococcus marinus str. MIT 9211]
 gi|159889340|gb|ABX09554.1| Fe-S oxidoreductase [Prochlorococcus marinus str. MIT 9211]
          Length = 882

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 42/243 (17%), Positives = 80/243 (32%), Gaps = 30/243 (12%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGK 238
           + I+ GC + C FC               +V++   K +   G  + +LL          
Sbjct: 267 IEIRRGCTRGCRFCQPGMLTRPARDVDPEEVINAVEKGMKETGYSDFSLLS-----LSCS 321

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
                     +L   L+     + L+  +       + +    G        L    ++G
Sbjct: 322 DYLSLPAVGVELRNRLA--DQNITLQLPSQRVDRFDENIAHIIGGSRKA--GLTFAPEAG 377

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRP--DIAISSDFIVGFPGETDDD---FRATMDL 353
           + R+   +N+  T      +++ IR         I   F++G PGETD+D      T   
Sbjct: 378 TQRLRDIVNKGLT---DTDLLNGIRKAMETGYRKIKLYFMIGLPGETDNDVIGIAKTCQW 434

Query: 354 VDKIGYAQAF------SFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFND 407
           + +                ++P+  TP          +V     +  QK L+EQ ++   
Sbjct: 435 LQESCNDIGHLKLNLTISNFTPKPHTPFQW------HSVSKSEFIRRQKLLKEQLITLRG 488

Query: 408 ACV 410
             V
Sbjct: 489 LKV 491


>gi|269798490|ref|YP_003312390.1| radical SAM protein [Veillonella parvula DSM 2008]
 gi|269095119|gb|ACZ25110.1| Radical SAM domain protein [Veillonella parvula DSM 2008]
          Length = 575

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 54/318 (16%), Positives = 117/318 (36%), Gaps = 60/318 (18%)

Query: 125 NVVVG-PQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQ 183
           ++V G P+T  R  E+L     G+ VV T+Y                  + G    + + 
Sbjct: 215 DIVEGVPKTIKRHFEML--TSGGETVVATNY-----------------TEFGAMYIIEVA 255

Query: 184 EGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
            GC + C FC+  Y   +   R L  + +   +    G     +                
Sbjct: 256 RGCGRHCRFCMAGYCFRVPRVRPLDILKEGVERAEKLGKKVGLMGA-------------A 302

Query: 244 KCTFSDLLYSLSEIK-GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
              + ++   ++ I+   +R    +     ++  ++    D       + +  ++GS+R+
Sbjct: 303 ISDYPEVDELVNYIRSKDMRYSCASLRADSLTQAVVDGLADSGQ--KTITIAPETGSERL 360

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA-------TMDLVD 355
            + +N+  +  E+ Q    + +      +    ++G P ETD+D  A       T   ++
Sbjct: 361 RRVINKGIS-EEHLQNAATLSAKSGIQHMRLYIMIGLPTETDEDIEAIVGLAERTQAHME 419

Query: 356 KIGYA---QAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQ 412
           K+G           + P+  TP   M    ++    ++L  ++K L++           +
Sbjct: 420 KVGCKGRLTLSINPFIPKPFTPFQWMAMD-NQKTVEKKLQYIKKALQKN----------R 468

Query: 413 IIEVLIEKHGKEKGKLVG 430
            IEVL+E    ++  + G
Sbjct: 469 RIEVLVE--SPKEAYIQG 484


>gi|227327367|ref|ZP_03831391.1| lipoyl synthase [Pectobacterium carotovorum subsp. carotovorum
           WPP14]
          Length = 321

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/183 (16%), Positives = 66/183 (36%), Gaps = 12/183 (6%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V    G  ++   ++    A+ + D G+  + +   +    R    DG   
Sbjct: 94  CTRRCPFCDV--AHGRPLTPDANEPEKLAQTIHDMGLRYVVITSVD----RDDLRDGGAQ 147

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAH-GDLDVLMPYLHLPVQSGSDRILK 304
            F+D + ++      +R+       R   D  ++        +  +    V     R+ +
Sbjct: 148 HFADCISAIRRKNPNIRIETLVPDFRGRMDRALEILTATPPDVFNHNLENV----PRVYR 203

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
            +          ++++  +   PDI   S  +VG  GET+ +    M  + + G      
Sbjct: 204 QVRPGANYEWSLKLLENFKKAHPDIPTKSGLMVGL-GETNAEIVEVMRDLRRHGVTMLTL 262

Query: 365 FKY 367
            +Y
Sbjct: 263 GQY 265


>gi|85114604|ref|XP_964726.1| lipoic acid synthetase, mitochondrial precursor [Neurospora crassa
           OR74A]
 gi|74629071|sp|Q7SF84|LIPA_NEUCR RecName: Full=Lipoyl synthase, mitochondrial; AltName: Full=Lipoate
           synthase; Short=LS; Short=Lip-syn; AltName: Full=Lipoic
           acid synthase; Flags: Precursor
 gi|28926518|gb|EAA35490.1| lipoic acid synthetase, mitochondrial precursor [Neurospora crassa
           OR74A]
          Length = 430

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 78/212 (36%), Gaps = 14/212 (6%)

Query: 162 RLSIVDGGYNRKRGVTAFLTIQ---EGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLI 218
           R   +   +       A  TI    + C + C FC V  +R         +  + A  L 
Sbjct: 146 RCPNIGECWGGSNKAAATATIMLMGDTCTRGCRFCSVKTSRKPP-PLDPHEPENTAEALA 204

Query: 219 DNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLI 278
             G+  + L   +    R    DG    F++ +  + + K    L    +        ++
Sbjct: 205 RWGLGYVVLTSVD----RDDLADGGARHFAETIRRI-KQKKPTLLVEALTGDFAGDLDMV 259

Query: 279 KAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR--PDIAISSDFI 336
           K   +  + + Y H  V++  +      +RR T  +  ++++ ++ VR    I   +  +
Sbjct: 260 KIVAESGLDV-YAH-NVETVENLTPYVRDRRATFRQSLKVLEHVKKVRGKEGIITKTSIM 317

Query: 337 VGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
           +G  GET+++    +  + K+        +Y 
Sbjct: 318 LGL-GETEEELWEALRELRKVDVDVVTFGQYM 348


>gi|166365688|ref|YP_001657961.1| hypothetical protein MAE_29470 [Microcystis aeruginosa NIES-843]
 gi|166088061|dbj|BAG02769.1| hypothetical protein MAE_29470 [Microcystis aeruginosa NIES-843]
          Length = 522

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 55/346 (15%), Positives = 111/346 (32%), Gaps = 35/346 (10%)

Query: 56  VNSMDDAD-----LIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVA 110
           VN   +AD     L++L+   +++       + + +   L            V V G   
Sbjct: 55  VNPETEADWEWCELVILSAMLVQKP---DFQALIQKAVQLGKK---------VAVGGPYP 102

Query: 111 QAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK-RVVDTDYSVEDKFERLSIVDGG 169
            +  ++ L      N ++  +    +P  LE    G+ + +       D           
Sbjct: 103 TSVPQDAL--DSGANYLILDEGELTVPLFLEAIAQGQSQGIFRSGDKPDVTLSPIPRFDL 160

Query: 170 YNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVCEITLL 228
             R   +   +    GC   C FC +    G +  ++  SQ + E + L D G      +
Sbjct: 161 LQRDDYLMMAVQFSRGCPFNCEFCDIISLYGRKPRTKEPSQTLAELQTLYDLGWRGSLFI 220

Query: 229 GQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLM 288
             +      + +   K    DL+  + +           S      D L+    +     
Sbjct: 221 VDDNFIGNQRNV---KRFLRDLIPWMKQHDYPFTFITEASVNLAEDDELLHLMAEAG--F 275

Query: 289 PYLHLPVQSGSDRILKSMNR-RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDF 347
             + L +++     L+   + ++T     +   +I +    + I + FI+GF GE     
Sbjct: 276 YSVFLGIETPDQDSLQVTRKLQNTRNPLVEACRKINAA--GLLIYAGFILGFDGERSGAG 333

Query: 348 RATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLC 393
                 V++    Q           T   N L+Q       +RL+ 
Sbjct: 334 ERIQAFVEETSIPQPMLGILQAPPNTALWNRLQQ------EQRLVE 373


>gi|91226810|ref|ZP_01261463.1| hypothetical protein V12G01_13574 [Vibrio alginolyticus 12G01]
 gi|91188941|gb|EAS75225.1| hypothetical protein V12G01_13574 [Vibrio alginolyticus 12G01]
          Length = 319

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 44/231 (19%), Positives = 74/231 (32%), Gaps = 21/231 (9%)

Query: 181 TIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL 240
           TI  G    CTFC V      E+   +  + ++ +            L            
Sbjct: 39  TIGRG---GCTFCNVASFADEEV--QIKSIHEQLKDRAGEIHRAKKYLA---YFQAYTST 90

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL-HLPVQSGS 299
             E     ++     +   +V L   T         L    G +         L +Q+ +
Sbjct: 91  YAEVQVLKNMYEEALKAADMVGLCVGTRPDCVPDAVLDLLSGYVQQGYEIWLELGLQTAN 150

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
           +  LK +NR H    Y +I  R R++   I + +  IVG P ET  +   T+  V  +G 
Sbjct: 151 NDTLKRINRGHDFECYAEITKRARTL--GIKVCTHLIVGLPKETRAENIETLQKVLAVGT 208

Query: 360 AQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACV 410
                       G+  +          KA R   L+    E+ V+     +
Sbjct: 209 DGIKLHGLHIVEGSTMA----------KAWRAGKLEAPELEEYVAIASEMI 249


>gi|26553953|ref|NP_757887.1| coproporphyrinogen III oxidase [Mycoplasma penetrans HF-2]
 gi|26453961|dbj|BAC44291.1| oxygen-independent coproporphyrinogen III oxidase [Mycoplasma
           penetrans HF-2]
          Length = 351

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/226 (14%), Positives = 80/226 (35%), Gaps = 16/226 (7%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + CT+C    T+        + +    +K++         + ++ N ++   ++G   
Sbjct: 16  CQEICTYCDFYRTKTK----DPNIINSYVKKIVSE-------IKEDNNQYKTIYIEGGTP 64

Query: 246 TFSDLLYSLSEIKGLVR-LRYTTSHPRDMSDCLI---KAHGDLDVLMPYLHLPVQSGSDR 301
            F +       +  L   L+       + +   I   +    L   +  + + VQ+ ++ 
Sbjct: 65  NFLNDNLLDELLSPLKNKLQNNYEFTIEANPEFITSSQIETLLKNNVNRISMGVQTTNNN 124

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
           ILK + R H      + I+ +        IS DFI   P   + D   T + ++K     
Sbjct: 125 ILKLLRRTHNIENVIEAINLLHKHNMK-NISCDFIYNLPLLKNSDLEETFNFIEKYKINH 183

Query: 362 AFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFND 407
              +    + G+  +    Q++ + +   L  ++    +      +
Sbjct: 184 ISFYSLEIKEGSILNKQKYQINVDKEEHHLEQIKAYFNKLNYYRYE 229


>gi|238795414|ref|ZP_04638929.1| Lipoyl synthase [Yersinia mollaretii ATCC 43969]
 gi|238720533|gb|EEQ12334.1| Lipoyl synthase [Yersinia mollaretii ATCC 43969]
          Length = 321

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 43/258 (16%), Positives = 86/258 (33%), Gaps = 19/258 (7%)

Query: 118 LRRSPIVNVVVGPQTYYRLPELLERAR-------FGKRVVDTDYSVEDKFERLSIVDGGY 170
           +   PI  VV   Q   R PE ++           G +       +    E  S  +   
Sbjct: 19  MALIPIKTVVTERQELLRKPEWMKIKLPADSGRIQGIKAALRKNGLHSVCEEASCPNLSE 78

Query: 171 NRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQ 230
               G   F+ +   C + C FC V    G  ++   ++     + + D G+  + +   
Sbjct: 79  CFNHGTATFMILGAICTRRCPFCDV--AHGRPVTPDANEPEKLGQTIQDMGLRYVVITSV 136

Query: 231 NVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAH-GDLDVLMP 289
           +    R    DG    F+D + ++      +++       R   D  +         +  
Sbjct: 137 D----RDDLRDGGAQHFADCISAIRAKNPTIKIETLVPDFRGRMDRALDILTATPPDVFN 192

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +    V     R+ + +          ++++R +   PDI   S  +VG  GET+ +   
Sbjct: 193 HNLENV----PRVYRQVRPGANYEWSLKLLERFKEAHPDIPTKSGLMVGL-GETNAEIVE 247

Query: 350 TMDLVDKIGYAQAFSFKY 367
            M  + + G       +Y
Sbjct: 248 VMRDLRRHGVTMLTLGQY 265


>gi|323436159|ref|ZP_01050978.2| oxygen-independent coproporphyrinogen III oxidase, putative
           [Dokdonia donghaensis MED134]
 gi|321496474|gb|EAQ38129.2| oxygen-independent coproporphyrinogen III oxidase, putative
           [Dokdonia donghaensis MED134]
          Length = 377

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 38/234 (16%), Positives = 87/234 (37%), Gaps = 23/234 (9%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEK 244
           C + C +C   +      S ++ +  +    +I    + +       V+     G     
Sbjct: 11  CKQACHYCDFHF------STTMGKKEEMITAIISELEMRKAEFENDEVSNLYFGGGTPSV 64

Query: 245 CTFSDLLYSLS------EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
               ++   +       +I+    +    ++P D+++  I+      +    L + VQS 
Sbjct: 65  LNTEEIEQIIDACYTHYKIEKDPEITLE-ANPDDLTEQKIRELAASPI--NRLSIGVQSF 121

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
            +  LK MNR H A E    +   R+  P+ ++  D I G PG +++ +   +D V  + 
Sbjct: 122 YEEDLKLMNRAHNAQEAIDCLRLTRATFPNSSL--DLIYGIPGMSNERWEQNIDKVLALD 179

Query: 359 YAQAFSFKYSPRLGTPGSNMLEQ-----VDENVKAERLLCLQKKLREQQVSFND 407
                ++  +    T   N +++     V++ V  +    L +K+        +
Sbjct: 180 LPHISAYALTVEPKTALENFIKKGIVPPVEDEVAQQHHELLIRKMEAAGYENYE 233


>gi|306822818|ref|ZP_07456194.1| coproporphyrinogen dehydrogenase [Bifidobacterium dentium ATCC
           27679]
 gi|309801312|ref|ZP_07695441.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Bifidobacterium dentium JCVIHMP022]
 gi|304553450|gb|EFM41361.1| coproporphyrinogen dehydrogenase [Bifidobacterium dentium ATCC
           27679]
 gi|308222201|gb|EFO78484.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Bifidobacterium dentium JCVIHMP022]
          Length = 402

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 38/237 (16%), Positives = 79/237 (33%), Gaps = 19/237 (8%)

Query: 186 CDKFCTFC------VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLL--GQNVNAWRG 237
           C + C +C       +    G       + V+ E   + D       +      V    G
Sbjct: 11  CMRRCGYCDFNTYTAIDMGAGASRGNYANMVIREMAIVRDWQERHGIVEPPADTVFFGGG 70

Query: 238 KGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSD--CLIKAHGDLDVLMPYLHLPV 295
                +      +L ++ E  G+      T+     +     ++   D       +   +
Sbjct: 71  TPTILKAADLVAMLDAVRETWGIADNAEITTEANPDTVNADYVRELADGG--FNRISFGM 128

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
           QS    +LK+++R HT       I    +    +  S D I G PGE+ DD+R +++   
Sbjct: 129 QSAVPHVLKTLDRTHTPENVEAGISAANAA--GMRSSVDLIYGAPGESLDDWRTSVNTAL 186

Query: 356 KIGYAQAFSFKYSPRLGTP-----GSNMLEQVDENVKAERLLCLQKKLREQQVSFND 407
            +      ++  +    T       + ML   D++ +A +       L    + + +
Sbjct: 187 DLEVNHISAYALTVAPNTTMGRRIAAGMLPTPDDDDEAAKYEIADALLSAAGLEWYE 243


>gi|300866229|ref|ZP_07110941.1| radical SAM family protein [Oscillatoria sp. PCC 6506]
 gi|300335748|emb|CBN56101.1| radical SAM family protein [Oscillatoria sp. PCC 6506]
          Length = 531

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 51/337 (15%), Positives = 108/337 (32%), Gaps = 41/337 (12%)

Query: 57  NSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEE 116
                A+L++ +   ++++        L +IR  K          LV   G    +  EE
Sbjct: 61  EEWQWAELVICSAMIVQKE------DLLAQIREAKRRGK------LVACGGPYPTSLPEE 108

Query: 117 ILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKR-- 174
              ++  V+ ++  +    LP  +E    G+    T        E+  +      R    
Sbjct: 109 --PQAAGVDYLILDEGEITLPMFVEAIARGE----TSGIYRSGGEKPDVTTTPVPRFDLL 162

Query: 175 GVTAF----LTIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVCEITLLG 229
            + A+    +    GC   C FC +    G +  ++   Q++ E   L   G      + 
Sbjct: 163 ELNAYDSMSIQFSRGCPFQCEFCDIIVLYGRKPRTKEPEQLIAELEFLYQLGWRRGVFMV 222

Query: 230 QNVNAWRGKGLDGEKCTFSDLLYSLS--EIKGLVRLRYTTSHPRDM--SDCLIKAHGDLD 285
            +          G K     LL  L   + +      + T    D+     L+    + +
Sbjct: 223 DD-------NFIGNKRNVKLLLKELKVWQQERQYPFVFNTEASIDLAQDQELMDLMVECN 275

Query: 286 VLMPYLHLPVQSGSDRILKSMNRR-HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETD 344
                + + V++  +  L+   +  +T     + ++ I      + + + FI+GF GE  
Sbjct: 276 --FNAVFVGVETPDEESLQMTKKFQNTRNSLVESMEAITKS--GLRVMAGFIIGFDGEKP 331

Query: 345 DDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
                 +   +                 T   + LE+
Sbjct: 332 GAGSRIVRFAEAAAIPSTTFGMLQALPHTALWHRLEK 368


>gi|254719188|ref|ZP_05180999.1| lipoyl synthase [Brucella sp. 83/13]
 gi|265984185|ref|ZP_06096920.1| lipoyl synthase [Brucella sp. 83/13]
 gi|306838181|ref|ZP_07471037.1| lipoic acid synthetase [Brucella sp. NF 2653]
 gi|264662777|gb|EEZ33038.1| lipoyl synthase [Brucella sp. 83/13]
 gi|306406771|gb|EFM62994.1| lipoic acid synthetase [Brucella sp. NF 2653]
          Length = 322

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 36/256 (14%), Positives = 86/256 (33%), Gaps = 14/256 (5%)

Query: 112 AEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYN 171
              E+  R    V   +    + R+   + R     R +     +    E     + G  
Sbjct: 15  RHPEKAHRPDSEV---LKKPDWIRVKAPVSRGYGETREIVRSNKLVTVCEEAGCPNIGEC 71

Query: 172 RKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQN 231
            ++    F+ + E C + C FC +       +    ++  + A+ +   G+  + +   +
Sbjct: 72  WEKKHATFMIMGEICTRACAFCNISTGIPNAL--DPNEPENIAKAVKQMGLTHVVITSVD 129

Query: 232 VNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL 291
               R    DG    F++++ ++ E      +   T         L         +  + 
Sbjct: 130 ----RDDLADGGAHHFAEVIKAVREATPATTIEILTPDFLRKEGALEIVVKARPDVFNH- 184

Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351
              +++   + LK +      +   +++ R++ + P I   S  +VG  GE  ++    M
Sbjct: 185 --NLETVPSKYLK-VRPGARYFHSIRLLQRVKELDPTIFTKSGIMVGL-GEERNEILQLM 240

Query: 352 DLVDKIGYAQAFSFKY 367
           D +           +Y
Sbjct: 241 DDLRSADVDFMTIGQY 256


>gi|222838026|gb|EEE76391.1| predicted protein [Populus trichocarpa]
          Length = 604

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 38/236 (16%), Positives = 74/236 (31%), Gaps = 32/236 (13%)

Query: 176 VTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDN--GVCEIT--LLGQ 230
           +   + I  GC   CTFC +    G  I SRS   ++ E   + D   G       L G 
Sbjct: 251 IRTSVNIMRGCFGGCTFCSITEHEGRIIQSRSEESIIQEVEDIRDKVKGFTGTISDLGGP 310

Query: 231 NVNAWR----------------------GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
             N +R                       + L  +      +      + G+ ++   + 
Sbjct: 311 TANMYRLGCKSPEIEAACRKPSCVFPGICQNLHTDHAPLVKIYRRARNLPGIKKILIGSG 370

Query: 269 HPRDMSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRRH--TAYEYRQIIDRI-R 323
              D++    +   +L    +  YL +  +      L  M +    +   ++Q+ ++   
Sbjct: 371 LRYDLAVKSPEYVKELVQHHVGGYLKIAPEHTESGPLTKMMKPGIGSYDRFKQMFEQFSE 430

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
                  +   FI   PG +D+D       + K G+       + P      + M 
Sbjct: 431 EAGKKQYLIPYFIAAHPGTSDEDMMNLAIWLKKNGFRADQVQTFYPSPMATATAMY 486


>gi|149237080|ref|XP_001524417.1| lipoic acid synthetase, mitochondrial precursor [Lodderomyces
           elongisporus NRRL YB-4239]
 gi|306755832|sp|A5E450|LIPA_LODEL RecName: Full=Lipoyl synthase, mitochondrial; AltName: Full=Lipoate
           synthase; Short=LS; Short=Lip-syn; AltName: Full=Lipoic
           acid synthase; Flags: Precursor
 gi|146451952|gb|EDK46208.1| lipoic acid synthetase, mitochondrial precursor [Lodderomyces
           elongisporus NRRL YB-4239]
          Length = 432

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 36/203 (17%), Positives = 74/203 (36%), Gaps = 11/203 (5%)

Query: 167 DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEIT 226
             G  +       + + + C + C FC V   R       +    + A  +   G+  + 
Sbjct: 161 CWGGKKSEATATIMLLGDTCTRGCRFCSVKTNRKPGKPDPME-PENTAEAISRWGLGYVV 219

Query: 227 LLGQNVNAWRGKGLDGEKCTFSDLLYSLS-EIKGLVRLRYTTSHPRDMSDCLIKAHGDLD 285
           L   +    R   +DG      + +  +  +   ++          D+    I A+  LD
Sbjct: 220 LTTVD----RDDLIDGGANHLKETVQKIKFKAPQILVEVLGGDFRGDLEMVKILANSGLD 275

Query: 286 VLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDD 345
           V    +   V++ +  I     RR T  +   ++   +  +P +   +  ++GF GETDD
Sbjct: 276 VYAHNMET-VEALTPHIRD---RRATYRQSLAVLRTAKETKPSLITKTSLMLGF-GETDD 330

Query: 346 DFRATMDLVDKIGYAQAFSFKYS 368
             R T+  + ++G       +Y 
Sbjct: 331 QIRQTLKDLREVGCDVVTFGQYM 353


>gi|114593623|ref|XP_526552.2| PREDICTED: lipoyl synthase, mitochondrial isoform 3 [Pan
           troglodytes]
          Length = 372

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 36/186 (19%), Positives = 67/186 (36%), Gaps = 15/186 (8%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLS--QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
           C + C FC V   R       L   +  + A+ + + G+  + L   +    R    DG 
Sbjct: 137 CTRGCRFCSVKTARNP---PPLDASEPYNTAKAIAEWGLDYVVLTSVD----RDDMPDGG 189

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPR-DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
               +  +  L E    + +   T   R D+      A   LDV    +    +  S   
Sbjct: 190 AEHIAKTVSYLKERNPKILVECLTPDFRGDLKAIEKVALSGLDVYAHNVETVPELQS--- 246

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
            K  + R    +  +++   + V+PD+   +  ++G  GE D+   ATM  + +      
Sbjct: 247 -KVRDPRANFDQSLRVLKHAKKVQPDVISKTSIMLGL-GENDEQVYATMKALREADVDCL 304

Query: 363 FSFKYS 368
              +Y 
Sbjct: 305 TLGQYM 310


>gi|94500833|ref|ZP_01307359.1| oxygen-independent coproporphyrinogen III oxidase [Oceanobacter sp.
           RED65]
 gi|94426952|gb|EAT11934.1| oxygen-independent coproporphyrinogen III oxidase [Oceanobacter sp.
           RED65]
          Length = 465

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 32/192 (16%), Positives = 70/192 (36%), Gaps = 10/192 (5%)

Query: 186 CDKFCTFCVVPYTRGIEISR--SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
           C   C +C           +      V+ +  ++   G      + Q ++   G     +
Sbjct: 67  CSHVCYYCACNKIITKHRDKAQPYLDVLFKEIEMRSQGYDASRPIEQ-LHWGGGTPTFID 125

Query: 244 KCTFSDLLYSLSE----IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
               S L+  L E    +    R       PR++ D  ++    +      + L VQ  +
Sbjct: 126 HEQMSALMKKLGEHFTLLDTDDRDYSIEIDPRELQDDTLEHLKAIG--FNRVSLGVQDFN 183

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
           +++ K++NR          + + R +    +I+ D I G P +  + F+ T++ V ++  
Sbjct: 184 EKVQKAVNRIQPRSMTEATLSQARELGFK-SINIDLIYGLPFQNRETFKETLETVIELSP 242

Query: 360 AQAFSFKYSPRL 371
            +   F Y+   
Sbjct: 243 DRISVFNYAHLP 254


>gi|325679732|ref|ZP_08159306.1| radical SAM domain protein [Ruminococcus albus 8]
 gi|324108547|gb|EGC02789.1| radical SAM domain protein [Ruminococcus albus 8]
          Length = 443

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 58/363 (15%), Positives = 102/363 (28%), Gaps = 63/363 (17%)

Query: 42  LRMEDMFFSQGYER------VNSMDDADLIVLNTCHIREKAAEK----VYSFLGRIRNLK 91
             +  M    GYE       V     AD          + A  K          R  N  
Sbjct: 32  EYIWTMLKDAGYEPFIWDGQVADEPFAD----------KLAEIKPYAVYICGRTRQENFM 81

Query: 92  NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA-------- 143
               K    +  V       A           V+ V      + +  +LE          
Sbjct: 82  KEYCKAAKAMGCVTMIGGLHAHTSYKRFYESYVDFVFRSFDIFGILNVLEERGLASVNGL 141

Query: 144 --RFGKRVVDTDYSVEDKFERLSIVDGG----YNRKR----GVTAFLTIQEGCDKFCTFC 193
             R G   ++ D    D  +RL   D      + R R       A +     C   C FC
Sbjct: 142 SRRQGSGWIENDSEPFDI-KRLPRPDRTNFYAHPRYRYLELQPCAHVRTAYCCPYRCKFC 200

Query: 194 V-VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLY 252
                  G  ++R +  VVDE   +       I ++  +            +      + 
Sbjct: 201 CRNKMNCGTYVTRDIEDVVDEIASI---DCENIYIVDDDFLF--------NEKRLQRFIE 249

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL-MPYLHLPVQSGSDRILKSMNRRHT 311
            + E    +  RY      D      +   +L  +   Y+ + +++  D+ L     R+ 
Sbjct: 250 LVRERG--IHKRYVCYGRADFISKHRELMEELKDIGFYYVLVGLEAADDKHLY----RYN 303

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETD---DDFRATMDLVDKIGYAQAFSFKYS 368
                        +  D+ I++  +  F  + D   +DFR     V +     A    ++
Sbjct: 304 KKSDLHANSAAVEILNDVGINA--MGMFIVDLDFKGEDFRDISRWVRRHKLKHAAISIFT 361

Query: 369 PRL 371
           P +
Sbjct: 362 PEM 364


>gi|282164386|ref|YP_003356771.1| probable lipoyl synthase [Methanocella paludicola SANAE]
 gi|282156700|dbj|BAI61788.1| probable lipoyl synthase [Methanocella paludicola SANAE]
          Length = 289

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 32/225 (14%), Positives = 68/225 (30%), Gaps = 18/225 (8%)

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           A  G   V T     + FE            RG   F+ +   C + C FC V + R   
Sbjct: 30  ADLGLNTVCTSAKCPNTFECWD---------RGSLTFMILGNVCTRACRFCAVAHAR-RG 79

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
                 +    A      G+  + +   +    R    D     +   +  + +     R
Sbjct: 80  QELDPEEPALVAEAAHRLGLSYVVITSVD----RDDLDDYGAEHYVACIQEIKKRNPGAR 135

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
           +             L K       ++ +    V+  S  +       + +     ++  +
Sbjct: 136 VEAIIPDFSGNVYYLRKVIDAGPDVIAHNVETVERTSPTVRDRRAGYYRS---IDVLRNV 192

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           +   P +   S  ++G  GE +D+ + T+  + +         +Y
Sbjct: 193 KRYEPGVKTKSSIMLGL-GEEEDEVKETIRRMHEARVDVLTMGQY 236


>gi|210610645|ref|ZP_03288545.1| hypothetical protein CLONEX_00735 [Clostridium nexile DSM 1787]
 gi|210152367|gb|EEA83373.1| hypothetical protein CLONEX_00735 [Clostridium nexile DSM 1787]
          Length = 491

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 41/346 (11%), Positives = 115/346 (33%), Gaps = 52/346 (15%)

Query: 63  DLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSP 122
           DL++ +T +    +       +   + +     K    +  ++ G   +  G+EI     
Sbjct: 81  DLVIFHTDYFMANSNTASLYSI---KLICEYFKKRDIKIKTLLLGKNGETIGKEIFEIIE 137

Query: 123 IVNVVVGPQTYYRLPELLERARFGK----------------------RVVDTDYSVEDKF 160
            +++VV  +    + +L+++    +                      ++ + +      +
Sbjct: 138 SLDIVVKGEADEFIKDLVDKIFSSELIGYPYIYVKQKEGIYCGDGVGKMNNVNLLPVPAY 197

Query: 161 ERLS-----IVDGGYNRKRGVTAFLTIQEGCDKFCTFC-VVPYTRGIEI--SRSLSQVVD 212
           E L      I    +     +   +    GC + C FC  + Y     +  S  + + + 
Sbjct: 198 ELLEDTLKWIEKINHMSMNTIPVSIRTSYGCTQKCNFCGGMKYWNCYYMRSSEKIEEELI 257

Query: 213 EARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
             + +  N +  + L  +     R              +  + ++    ++       R 
Sbjct: 258 YMKNVWGNRIKVVFLADELFTVNR------------KHVKDVVDVFERHKIMLNGVFSRV 305

Query: 273 MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAIS 332
            +    +   ++  +   +    ++  D ILK  N+     +     D  +  + D+++ 
Sbjct: 306 DTFN-DELAKEIKKISKTVVFGAENCVDDILKLANKNQKFKDVLHACDIAKRNKLDVSL- 363

Query: 333 SDFIVGFPGETDDDFRATMDLVDKI----GYAQAFSFKYSPRLGTP 374
            ++IVG PGE+ +     ++ +  +          ++ + P   TP
Sbjct: 364 -EWIVGLPGESIESAIKNLNTIYSMLVNKKVDNINTYVFCPHPNTP 408


>gi|163840672|ref|YP_001625077.1| coproporphyrinogen III oxidase [Renibacterium salmoninarum ATCC
           33209]
 gi|162954148|gb|ABY23663.1| oxygen-independent coproporphyrinogen-III oxidase [Renibacterium
           salmoninarum ATCC 33209]
          Length = 409

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 40/245 (16%), Positives = 81/245 (33%), Gaps = 19/245 (7%)

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC------VVPYTRGIEI- 203
           D + + ED      ++ G   R  G+ A +     C   C +C       +    G    
Sbjct: 7   DGEPAPEDGLLPEQVLAGVAERGFGLYAHIPF---CAVRCGYCDFNTYTAIELGGGASQA 63

Query: 204 --SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
             S +    ++ A + +D        L           L       + L  ++     + 
Sbjct: 64  AYSGTAISEIEFAARAMDKSGLPARKLSTVFFGGGTPTLLPAADLAAMLRAAVGRWGLMP 123

Query: 262 RLRYTTSHPRD-MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
               TT    D ++   ++           +   +QS   ++LK ++R H      Q + 
Sbjct: 124 GAEVTTEANPDSVTRESLQELAQAG--FTRVSFGMQSAVPKVLKVLDRTHRPERVSQAVA 181

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN--M 378
             R     + +S D I G PGE+ +D+R++++           ++      GT  +    
Sbjct: 182 WAREA--GLKVSIDLIYGTPGESLEDWRSSVEAALSYQPDHISAYALIIEDGTKLAAQIR 239

Query: 379 LEQVD 383
             +V 
Sbjct: 240 RGEVP 244


>gi|91787105|ref|YP_548057.1| coproporphyrinogen III oxidase [Polaromonas sp. JS666]
 gi|91696330|gb|ABE43159.1| oxygen-independent coproporphyrinogen III oxidase [Polaromonas sp.
           JS666]
          Length = 462

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/196 (16%), Positives = 73/196 (37%), Gaps = 20/196 (10%)

Query: 186 CDKFCTFC-----VVPY-----TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW 235
           C+  C +C     +  +     T    +SR +   +  AR  ++  V ++ L G      
Sbjct: 66  CESLCYYCACNKIITKHHERAATYLRYLSREVD--LHTARLGLEQPVTQLHLGGGTPTFL 123

Query: 236 RGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPV 295
               L       + L  S + + G            D +   +    +L      +   V
Sbjct: 124 SDAEL---GELMAMLRRSFALVPGGEYSIEIDPRTVDGAR--LATLAELG--FNRISFGV 176

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
           Q     + K+++R   A +   ++++ R++  D +++ D I G P +T + F  T+  V 
Sbjct: 177 QDFDPDVQKAVHRIQPAEQVFALMEQARAIGFD-SVNIDLIYGLPRQTPESFARTLAQVQ 235

Query: 356 KIGYAQAFSFKYSPRL 371
           ++   +   + Y+   
Sbjct: 236 QLRPDRIALYAYAHLP 251


>gi|116747554|ref|YP_844241.1| putative radical SAM protein [Syntrophobacter fumaroxidans MPOB]
 gi|116696618|gb|ABK15806.1| conserved hypothetical radical SAM protein [Syntrophobacter
           fumaroxidans MPOB]
          Length = 304

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/170 (20%), Positives = 62/170 (36%), Gaps = 12/170 (7%)

Query: 189 FCTFCVV--PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLG--QNVNAWRGKGLDGEK 244
            C +C      T   E S S+   + EA+ ++         +   Q+ +           
Sbjct: 43  GCIYCNERGSGTGAAEES-SIGAQIREAKAILRRRYNAKRFIAYFQSFSNTY-----APL 96

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304
               +L     E   +V L   T       + L          + +L   +QS  D  L+
Sbjct: 97  PRLRELYAEALEDPEVVGLSIGTRPDCVPDEVLDHLRALSAKHLIWLEYGLQSAKDSTLE 156

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
            +NRRH+   +   + R R+    +++ +  I+G PGET +D   T   +
Sbjct: 157 RINRRHSVETFSDAVRRTRTR--GLSVCAHVILGLPGETSEDMLNTARFI 204


>gi|254473123|ref|ZP_05086521.1| conserved hypothetical protein [Pseudovibrio sp. JE062]
 gi|211957844|gb|EEA93046.1| conserved hypothetical protein [Pseudovibrio sp. JE062]
          Length = 234

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/183 (18%), Positives = 58/183 (31%), Gaps = 18/183 (9%)

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
           G    R +  +++E  ++  + V    L   ++   R   L+  K      +    E   
Sbjct: 3   GKTRYRPIPDIINEISEMETDWVE---LHADHLTEDRDYALELFKALEPLKIRWAGE--- 56

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH-TAYEYRQI 318
                  T+        L++A         YL + +++ S   LK   +        +  
Sbjct: 57  -------TTIRIADDPELLEAAARSG--AKYLLIGIETPSKAALKRAGKGFVKPENLKSQ 107

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           I  I +    I + +  I GF   T + F  T      IG          P  G+     
Sbjct: 108 ISNIHA--HGIIVDTTAIFGFDEHTPEIFIETAKFYHDIGVDITAPAIAIPFPGSRFYKQ 165

Query: 379 LEQ 381
           LEQ
Sbjct: 166 LEQ 168


>gi|218961621|ref|YP_001741396.1| radical SAM domain protein [Candidatus Cloacamonas acidaminovorans]
 gi|167730278|emb|CAO81190.1| radical SAM domain protein [Candidatus Cloacamonas acidaminovorans]
          Length = 547

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 45/259 (17%), Positives = 86/259 (33%), Gaps = 29/259 (11%)

Query: 148 RVVDTDYSVEDKFERLSIVDGGY-NRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SR 205
           + +D+ Y++   ++   +  G        +   +T   GC   C FC +   +G  I SR
Sbjct: 261 KEMDSIYALPFAYQPHPVYAGHKIPAYEQIKDSITSHRGCYGGCNFCAIACHQGRNIQSR 320

Query: 206 SLSQVVDEARKLI----DNGVCEITLLGQNVNAWRGKGLDGEKCTFSDL----------- 250
           S + ++ EA+K      D G     +          +      C   D+           
Sbjct: 321 SETSLLKEAQKHTGTISDVGGPTANMYASFCGLDFPETCKRNSCLVPDICPNLQINHSVQ 380

Query: 251 LYSLSEIKGLVRLRYTTS------HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304
           L  L++I  L R+++               D  I+A          L L  +     +L+
Sbjct: 381 LEILAKIGNLPRIKHLFIASGIRYDMAVNDDNYIEALA-TKYTGGRLKLAPEHSVSSVLR 439

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFI----VGFPGETDDDFRATMDLVDKIGYA 360
            MN+      + +   +         + S  I    +G PG T +D     + + K    
Sbjct: 440 LMNKP-QIEVFEKFCKKFYFYTNKAGLKSQIIPYLIIGHPGTTMEDAFELRNWLRKNKLK 498

Query: 361 QAFSFKYSPRLGTPGSNML 379
                +++P   T  + M 
Sbjct: 499 VEQVQEFTPTPMTISTCMY 517


>gi|37577166|ref|NP_006850.2| lipoyl synthase, mitochondrial isoform 1 precursor [Homo sapiens]
 gi|206729917|sp|O43766|LIAS_HUMAN RecName: Full=Lipoyl synthase, mitochondrial; AltName: Full=Lipoate
           synthase; Short=LS; Short=Lip-syn; AltName: Full=Lipoic
           acid synthase; Flags: Precursor
 gi|119613338|gb|EAW92932.1| lipoic acid synthetase, isoform CRA_a [Homo sapiens]
 gi|119613340|gb|EAW92934.1| lipoic acid synthetase, isoform CRA_a [Homo sapiens]
 gi|158257908|dbj|BAF84927.1| unnamed protein product [Homo sapiens]
          Length = 372

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 36/186 (19%), Positives = 67/186 (36%), Gaps = 15/186 (8%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLS--QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
           C + C FC V   R       L   +  + A+ + + G+  + L   +    R    DG 
Sbjct: 137 CTRGCRFCSVKTARNP---PPLDASEPYNTAKAIAEWGLDYVVLTSVD----RDDMPDGG 189

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPR-DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
               +  +  L E    + +   T   R D+      A   LDV    +    +  S   
Sbjct: 190 AEHIAKTVSYLKERNPKILVECLTPDFRGDLKAIEKVALSGLDVYAHNVETVPELQS--- 246

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
            K  + R    +  +++   + V+PD+   +  ++G  GE D+   ATM  + +      
Sbjct: 247 -KVRDPRANFDQSLRVLKHAKKVQPDVISKTSIMLGL-GENDEQVYATMKALREADVDCL 304

Query: 363 FSFKYS 368
              +Y 
Sbjct: 305 TLGQYM 310


>gi|25028747|ref|NP_738801.1| coproporphyrinogen III oxidase [Corynebacterium efficiens YS-314]
 gi|23494033|dbj|BAC19001.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Corynebacterium efficiens YS-314]
          Length = 401

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 35/139 (25%), Positives = 58/139 (41%), Gaps = 8/139 (5%)

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
           S     A  +       + L +QS S  +L+ ++RRHT           R+   D  ++ 
Sbjct: 124 SPEFFDALRESG--YNRISLGMQSASSSVLRVLDRRHTPGRPVAAAKEARAAGFD-HVNL 180

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM-----LEQVDENVKA 388
           D I G P ETD+D R T+D V +       ++      GT  +       L   DE+V A
Sbjct: 181 DMIYGTPTETDEDVRKTLDAVLEADVDHVSAYSLIVEDGTAMARKVRRGELPAPDEDVYA 240

Query: 389 ERLLCLQKKLREQQVSFND 407
           +R   + ++LR     + +
Sbjct: 241 DRYEMIDQRLRANGFDWYE 259


>gi|295838585|ref|ZP_06825518.1| conserved hypothetical protein [Streptomyces sp. SPB74]
 gi|197697788|gb|EDY44721.1| conserved hypothetical protein [Streptomyces sp. SPB74]
          Length = 705

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 36/213 (16%), Positives = 72/213 (33%), Gaps = 13/213 (6%)

Query: 174 RGVTAFLTIQEGCDKFCTFCVV-PYTRGIEISRSLSQV---VDEARKLIDNGVCEITLLG 229
           RG    +T   GC   C FC    +       R  ++V   +    + +   V   T   
Sbjct: 193 RGGVPTITTTRGCPFSCDFCTEGQHYFSKVAKRPRAEVEAELHYIGRRMAPLVAAGTARS 252

Query: 230 QNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMP 289
           + +      G+  E      +L    ++ G  RL   T+        L  A   +   + 
Sbjct: 253 ELLITDSNFGMFPEDKHTCQVLAECQKLYGWPRLVNVTTGKNQRERVL-DAVAQVPGTI- 310

Query: 290 YLHLPVQSGSDRILKSMNRRH-TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFR 348
            L   VQS    +L ++ R++ +A +  +I   ++S        S+ I+  P ++     
Sbjct: 311 SLSGSVQSLDTDVLAAVQRKNISAEKMMEIA--LQSAEAGAQSYSEVILALPDDSKKKHF 368

Query: 349 ATMDLVDKIGYAQAFSFKYSPRL----GTPGSN 377
            T+  +    + +   F+ +         P   
Sbjct: 369 DTLRGLMDARFDRLNMFQLTLLPSSQMYAPAYR 401


>gi|109074019|ref|XP_001091641.1| PREDICTED: lipoyl synthase, mitochondrial isoform 1 [Macaca
           mulatta]
          Length = 322

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 36/186 (19%), Positives = 67/186 (36%), Gaps = 15/186 (8%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLS--QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
           C + C FC V   R       L   +  + A+ + + G+  + L   +    R    DG 
Sbjct: 137 CTRGCRFCSVKTARNP---PPLDASEPYNTAKAIAEWGLDYVVLTSVD----RDDMPDGG 189

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPR-DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
               +  +  L E    + +   T   R D+      A   LDV    +    +  S   
Sbjct: 190 AEHIAKTVSYLKERNPKILVECLTPDFRGDLKAIEKVALSGLDVYAHNVETVPELQS--- 246

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
            K  + R    +  +++   + V+PD+   +  ++G  GE D+   ATM  + +      
Sbjct: 247 -KVRDPRANFDQSLRVLKHAKKVQPDVISKTSIMLGL-GENDEQVYATMKALREADVDCL 304

Query: 363 FSFKYS 368
              +Y 
Sbjct: 305 TLGQYM 310


>gi|24372904|ref|NP_716946.1| hypothetical protein SO_1326 [Shewanella oneidensis MR-1]
 gi|24347033|gb|AAN54391.1|AE015577_1 conserved hypothetical protein [Shewanella oneidensis MR-1]
          Length = 309

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 42/202 (20%), Positives = 70/202 (34%), Gaps = 24/202 (11%)

Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW--------RGKG 239
             CTFC V        S    + +    + +  G          +NA             
Sbjct: 43  GGCTFCNV-----ASFSYQQKETL-SISEQLQQGKARYKEAKPKLNADKFIAYFQAYTST 96

Query: 240 LDGEKCTFSDLLYSL--SEIKGLVRLRYTTSHPRDMSDCLIKAHGD--LDVLMPYLHLPV 295
            D  +   S    ++  SEI GL       + P  + D ++          +  +L L +
Sbjct: 97  YDEYQVLMSKYDEAVKDSEIVGL----CVGTRPDCVPDNVLDLLASYQHKGVDVWLELGL 152

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
           Q+ +D+ L  +NR H    Y   + R RS    + + +  I+G PGET  D+ AT+  V 
Sbjct: 153 QTANDKTLHHINRGHNFACYCDTVSRARSR--GLKVCTHLILGLPGETPLDYMATLQAVL 210

Query: 356 KIGYAQAFSFKYSPRLGTPGSN 377
             G             G+  + 
Sbjct: 211 AQGVDGLKLHPLHVVEGSTMAK 232


>gi|121603727|ref|YP_981056.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Polaromonas naphthalenivorans CJ2]
 gi|120592696|gb|ABM36135.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Polaromonas naphthalenivorans CJ2]
          Length = 396

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 32/209 (15%), Positives = 67/209 (32%), Gaps = 20/209 (9%)

Query: 186 CDKFCTFCVV--PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
           C K C +C        G        + +D     ++  +  +   G+ V++    G  G 
Sbjct: 32  CIKKCPYCDFNSHEAPGEL---PEQRYIDALVADLEASLPLVW--GRTVHSIFIGG--GT 84

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL-------MPYLHLPVQ 296
              FS    ++  + G +R R       +++        + D         +  L + VQ
Sbjct: 85  PSLFS--PQAIDRLLGDIRARLRLEADCEITLEANPGTFEKDRFRAFCSAGVNRLSIGVQ 142

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
           S  D  LK++ R H   +    ++           + D +   PG+T ++    M     
Sbjct: 143 SFDDVHLKALGRVHDRAQAIAAVEEAAQAFD--TFNLDIMYALPGQTLENQAQDMRQALA 200

Query: 357 IGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
           +       +  +    T  +     + E 
Sbjct: 201 MQPPHISIYHLTIEPNTYFAKFPPLIPEE 229


>gi|313159743|gb|EFR59100.1| radical SAM domain protein [Alistipes sp. HGB5]
          Length = 500

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 42/243 (17%), Positives = 82/243 (33%), Gaps = 25/243 (10%)

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           ER   G+R       VE + E       GY  KR     +  + GC   C +C  P+  G
Sbjct: 207 ERTGNGRRSYLPAIEVEFEPEL-----TGYYWKRSGMLNIQTKRGCPYECIYCSYPHIDG 261

Query: 201 I-EISRSLSQVVDEA-RKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258
               +     + +   R   D G+  +       N          +         +    
Sbjct: 262 RCVRTMDPEIIAENILRAKRDYGINYLFFTDSVFNIR-------PEYNVRLAETLIRRGT 314

Query: 259 GLVRLRYTTSHPRDMS-DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
            +    Y +    D     L +A G     + ++    +S  DR L++  +R T   +  
Sbjct: 315 NVAWGAYFSPRGIDAEQMRLFRASG-----LTHIEFGTESFCDRTLEAYGKRFT---FGD 366

Query: 318 IIDRIR-SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP-RLGTPG 375
           ++   R ++   +  +   I+G  G+T +  R T++   ++ Y   F +        T  
Sbjct: 367 VVRASRLALDNGVYYAHFLILGGYGDTREHVRETIENSRRLEYTVMFPYAGMRIYPHTRL 426

Query: 376 SNM 378
           + +
Sbjct: 427 AEL 429


>gi|270293889|ref|ZP_06200091.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270275356|gb|EFA21216.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 612

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 53/329 (16%), Positives = 103/329 (31%), Gaps = 69/329 (20%)

Query: 108 CVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVD 167
           C+   + E    R      +      Y    +L+++     VV+  Y    + E     D
Sbjct: 233 CLKDKKKEAANFRH-----IEEESNKYTASRILQKSGKLTVVVNPPYPPLTEAELDRSFD 287

Query: 168 GGYNR-------KRGVTAFLTI------QEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDE 213
             Y R        + + A+  I        GC   C FC +   +G   +SRS   ++ E
Sbjct: 288 LPYTRLPHPKYKGKRIPAYDMIKFSVNLHRGCFGGCAFCTISAHQGKFIVSRSKESILKE 347

Query: 214 AR---KLIDNGVCEITLLGQNVNAWRGKGLDGEKCT----------------------FS 248
            +   +L D       L G + N +R KG D   C                         
Sbjct: 348 VKAITELPDFKGYLSDLGGPSANMYRMKGRDEAVCRKCKRPSCIYPKVCPNLNTDHRPLL 407

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLH---------------- 292
           D+ +++  + G+ +          +   L+                              
Sbjct: 408 DIYHAVDALPGIKKSFIG----SGIRYDLLLHQSKDPNTNKSTQEYTRELIARHVSGRLK 463

Query: 293 LPVQSGSDRILKSMNRRHTAYE--YRQIIDRIRSVRPDIA--ISSDFIVGFPGETDDDFR 348
           +  +  SDR+L  M +   +    +++I DRI +    +   +   FI   PG  ++D  
Sbjct: 464 VAPEHTSDRVLNIMRKPPFSQFGEFKKIFDRI-NHEEGLRQQLIPYFISSHPGCKEEDMA 522

Query: 349 ATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
               +  ++ +       ++P   T  + 
Sbjct: 523 ELAVITKRLDFHLEQVQDFTPTPMTVATE 551


>gi|221128057|ref|XP_002155657.1| PREDICTED: hypothetical protein [Hydra magnipapillata]
 gi|260222694|emb|CBA32509.1| Lipoyl synthase [Curvibacter putative symbiont of Hydra
           magnipapillata]
          Length = 341

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 74/208 (35%), Gaps = 12/208 (5%)

Query: 161 ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN 220
           E  S  + G    +G   F+ + + C + C FC V + R   +   +++  + A+ +   
Sbjct: 85  EEASCPNIGECFGKGTATFMIMGDKCTRRCPFCDVGHGRPDPL--DVNEPDNLAKTIAQL 142

Query: 221 GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKA 280
            +  + +   +    R    DG    F + +    E+    ++       R   D  ++ 
Sbjct: 143 KLNYVVITSVD----RDDLRDGGAGHFVECIRKTRELSPKTQIEVLVPDFRGRDDRALEI 198

Query: 281 H-GDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGF 339
                  +M +    +     R+ K             ++ + +++ PD+   S  +VG 
Sbjct: 199 LKAAPPDVMNHNLETI----PRLYKEARPGSDYQFSLNLLKKFKALFPDVPTKSGLMVGL 254

Query: 340 PGETDDDFRATMDLVDKIGYAQAFSFKY 367
            GETDD+    M  +           +Y
Sbjct: 255 -GETDDEILEVMRDMRAHNIEMLTIGQY 281


>gi|325122123|gb|ADY81646.1| lipoyl synthase [Acinetobacter calcoaceticus PHEA-2]
          Length = 328

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/207 (15%), Positives = 66/207 (31%), Gaps = 10/207 (4%)

Query: 161 ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN 220
           E  +  +       G   F+ + + C + C FC V    G        +    A  + + 
Sbjct: 66  EEAACPNLPECFGGGTATFMIMGDICTRRCPFCDV--AHGRPKPLDEDEPKQLAETVANL 123

Query: 221 GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKA 280
            +  + +   +    R    DG    F   +  + +      +        D    L  A
Sbjct: 124 NLKYVVITSVD----RDDLHDGGAAHFVKCIEEIRKHCPETLIEILVP---DFRGRLETA 176

Query: 281 HGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFP 340
              L +  P +         R+ K+M          +++ R ++  PDI   S  +VG  
Sbjct: 177 LSTLSLSPPDVFNHNIETVPRLYKAMRPGSDYQHSLELLKRFKAYCPDIKTKSGLMVGL- 235

Query: 341 GETDDDFRATMDLVDKIGYAQAFSFKY 367
           GE + +  A ++ +           +Y
Sbjct: 236 GEIEAEVLALLNDLKDYQVDLVTIGQY 262


>gi|262172875|ref|ZP_06040553.1| coproporphyrinogen III oxidase oxygen-independent [Vibrio mimicus
           MB-451]
 gi|261893951|gb|EEY39937.1| coproporphyrinogen III oxidase oxygen-independent [Vibrio mimicus
           MB-451]
          Length = 462

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 53/298 (17%), Positives = 104/298 (34%), Gaps = 24/298 (8%)

Query: 127 VVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVD----GGYNRKRGVTAFLTI 182
           VV  Q       +L++  +      +  +  +  E  +I D         +R ++ ++ I
Sbjct: 5   VVPSQQIVWDQAILDKYNYSGPRYTSYPTAVEFHEAFTIADFDMACTQYPERPLSLYIHI 64

Query: 183 QEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG 242
              C K C +C          S    + +D     I        L G+NV         G
Sbjct: 65  PF-CHKLCYYCGCNKVITRH-SHKADEYLDVLEHEIRQ--RASLLTGRNVTQLH---FGG 117

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL-------MPYLHLPV 295
              TF      +S +  L+R  +  +   ++S  +      LDVL          + + V
Sbjct: 118 GTPTF-LTNAQISRLMTLLRSEFDFADDAEISIEIDPREIQLDVLDHLRQEGFNRVSIGV 176

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS-DFIVGFPGETDDDFRATMDLV 354
           Q  +  + K +NR         +++R + +      ++ D I G P +T + F  T+  V
Sbjct: 177 QDFNKEVQKLVNREQDEQFIFALVERAKQL--GFRSTNLDLIYGLPKQTAETFAQTLQQV 234

Query: 355 DKIGYAQAFSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVG 411
             +   +   F Y+       +   ++  D     E+L  LQ+ +     +     +G
Sbjct: 235 LTMQPGRLSVFNYAHMPQLFAAQRKIKDADLPAAEEKLAILQQTIATLTGAGYQ-FIG 291


>gi|227872939|ref|ZP_03991240.1| lipoyl synthase [Oribacterium sinus F0268]
 gi|227841213|gb|EEJ51542.1| lipoyl synthase [Oribacterium sinus F0268]
          Length = 303

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 35/240 (14%), Positives = 85/240 (35%), Gaps = 11/240 (4%)

Query: 128 VGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCD 187
           +G +  +      + A      +  D  +    +  +  + G   ++    F+ +   C 
Sbjct: 18  LGKKPDWLKVRYNQEATEEVAALMKDLRLNTVCKEANCPNMGECYRKHTATFMILGSVCT 77

Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTF 247
           + C FC V   R   +     + ++ A+      +  + L      + R    DG    F
Sbjct: 78  RNCRFCNVSCGRPEAV--DEEEPMNVAKAAKQLHLKHVVLT----CSTRDDLEDGGALQF 131

Query: 248 SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307
           +  + ++ E+     +    S  +  ++ L         ++ +    V+     + +++ 
Sbjct: 132 AKTIRAIRELCPGTTIETLISDMKGRTESLDIVLEAKPEVLNHNVETVK----ELQRAVR 187

Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
            +        ++   +   PDI + + F+VG  GET++     MD V + G       +Y
Sbjct: 188 PQAAYERSLGVLRYCKQHSPDIRVKTGFMVGL-GETEEQIDRLMDDVLETGCDILTIGQY 246


>gi|109074017|ref|XP_001091994.1| PREDICTED: lipoyl synthase, mitochondrial isoform 3 [Macaca
           mulatta]
          Length = 372

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 36/186 (19%), Positives = 67/186 (36%), Gaps = 15/186 (8%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLS--QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
           C + C FC V   R       L   +  + A+ + + G+  + L   +    R    DG 
Sbjct: 137 CTRGCRFCSVKTARNP---PPLDASEPYNTAKAIAEWGLDYVVLTSVD----RDDMPDGG 189

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPR-DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
               +  +  L E    + +   T   R D+      A   LDV    +    +  S   
Sbjct: 190 AEHIAKTVSYLKERNPKILVECLTPDFRGDLKAIEKVALSGLDVYAHNVETVPELQS--- 246

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
            K  + R    +  +++   + V+PD+   +  ++G  GE D+   ATM  + +      
Sbjct: 247 -KVRDPRANFDQSLRVLKHAKKVQPDVISKTSIMLGL-GENDEQVYATMKALREADVDCL 304

Query: 363 FSFKYS 368
              +Y 
Sbjct: 305 TLGQYM 310


>gi|260060744|ref|YP_003193824.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Robiginitalea biformata HTCC2501]
 gi|88784874|gb|EAR16043.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Robiginitalea biformata HTCC2501]
          Length = 377

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 39/234 (16%), Positives = 87/234 (37%), Gaps = 23/234 (9%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C +C   +       +    +++     ++    E  L GQ        G      
Sbjct: 11  CKQACHYCDF-HFSTTLKHK--QGLLEAMELEMEQRRDE--LGGQPAETLYFGGGTPSLL 65

Query: 246 TFSDLLYSLSEIKGLVRL-----RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300
           T +++   +        L         ++P D+    ++        +  L + +QS  +
Sbjct: 66  TGAEIGQLIRRAAACFGLAADAEITLEANPDDLPPGRLEELALSP--VNRLSIGIQSFHE 123

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
             L+ MNR H+A E  + ++   +   + +I  D I G PG   DD++ T+++   +G+ 
Sbjct: 124 TELRWMNRAHSAREALECLEHAAARFANYSI--DLIYGIPGSRPDDWKRTLEV--ALGFD 179

Query: 361 QAFSFKY--SPRLGTPGSNMLEQ-----VDENVKAERLLCLQKKLREQQVSFND 407
                 Y  +    T  +  +++     VD++   E    L + L++      +
Sbjct: 180 PPHISAYALTVEPDTALARFIDKGVTPGVDDHRAREDFSHLVETLQQAGYDHYE 233


>gi|293394243|ref|ZP_06638543.1| radical SAM protein [Serratia odorifera DSM 4582]
 gi|291423221|gb|EFE96450.1| radical SAM protein [Serratia odorifera DSM 4582]
          Length = 309

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 35/176 (19%), Positives = 61/176 (34%), Gaps = 12/176 (6%)

Query: 188 KFCTFCVV-PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT 246
             CTFC V  +       +++++ +      ++     +                 E   
Sbjct: 43  GGCTFCNVASFADEQMRRQTIAEQLAAQAGKVNRAKRYLAYF------QAYTSTYAEVAL 96

Query: 247 FSDLLYSLSEIKGLVRLRYT--TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304
              L     E   +V +          + +  L+  +      + +L L +Q+  D+ LK
Sbjct: 97  LESLYRQALEQANMVGICVGTRPDCVPEAALDLLAGYRAQGYEV-WLELGLQTAHDKTLK 155

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
            +NR H    Y+Q   R R     + +    IVG PGET  D  AT+  V   G  
Sbjct: 156 RINRGHDFCCYQQTARRARER--GLKVCCHLIVGLPGETPADHLATLVAVVAAGVD 209


>gi|224538263|ref|ZP_03678802.1| hypothetical protein BACCELL_03154 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224520123|gb|EEF89228.1| hypothetical protein BACCELL_03154 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 309

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 46/204 (22%), Positives = 83/204 (40%), Gaps = 15/204 (7%)

Query: 188 KFCTFCVV----PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLG--QNVNAWRGKGLD 241
             CT+C      P     E S +    ++E +    +   E+  L   Q      G+ L+
Sbjct: 44  GGCTYCNNQTFNPEYCRTEKSVTQQ--LEEGKVFFAHKYPEMKYLAYFQAYTNTYGE-LE 100

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
             K  + + L S+S++ GLV        P  +   L + + +  +L+ Y    ++S  D 
Sbjct: 101 ALKRKYEEAL-SVSDVVGLVIGTRPDCMPDTLLHYLEEVNKNTFLLVEY---GIESTHDA 156

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
            L+ +NR HT  +    ++  R+V   I      I+G PGET +D  A    + ++    
Sbjct: 157 TLRRINRGHTFQDTVDAVE--RTVACGILTGGHIILGLPGETHEDLVAQAATLSRLPITT 214

Query: 362 AFSFKYSPRLGTPGSNMLEQVDEN 385
               +     GT  ++  EQ  E+
Sbjct: 215 LKMHQLQLIRGTRMAHEYEQHPED 238


>gi|15679877|ref|NP_276995.1| hypothetical protein MTH1895 [Methanothermobacter
           thermautotrophicus str. Delta H]
 gi|2623028|gb|AAB86355.1| conserved protein [Methanothermobacter thermautotrophicus str.
           Delta H]
          Length = 501

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 52/292 (17%), Positives = 109/292 (37%), Gaps = 28/292 (9%)

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLT-IQEGCDKFCTFCVVPYTRGIEISRSL 207
           V + D +     + + + D          +FL  +  GC + C FC+  Y    +   SL
Sbjct: 160 VENMDEACHPVRQIVPVTDDRSLTPSLGRSFLLGVSRGCSRGCRFCMSGYLYRPKRETSL 219

Query: 208 SQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
            +++D +    +  G  +++L+G             +     +L   L ++  +V +   
Sbjct: 220 RKLIDISESGCEATGYSKVSLIG---------AAASDYSRIDELCNELVDMGLMVSMPSL 270

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK-SMNRRHTAYEYRQIIDRIRSV 325
                  +  L++A   +   +  + +  +  S   L+  +N+  T     +   +   +
Sbjct: 271 RIESV--TPELMEAL--IRGGLKTITMAPE--STMKLRDRLNKPITDSMVFEKTRKALEM 324

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS-----PRLGTPGSNMLE 380
              + +   F++G PGE+ +D      L+  +   +     +S     P+  TP     E
Sbjct: 325 --GLRVKMYFLIGAPGESREDLEEMARLMRDLSEIRRGRVSFSVNPLIPKPHTPLQ--WE 380

Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS 432
             D     +R+  L + +R   V       G I  VL    G E G+L+ R+
Sbjct: 381 GYDAREMKQRIRFLGRLVRGLPVRMGSPRGGLIQHVLSTG-GPEIGELIERA 431


>gi|145219103|ref|YP_001129812.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Prosthecochloris vibrioformis DSM 265]
 gi|145205267|gb|ABP36310.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Chlorobium phaeovibrioides DSM 265]
          Length = 373

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 37/192 (19%), Positives = 63/192 (32%), Gaps = 12/192 (6%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C K C++C      G      +       R+   +      L GQ + A    G      
Sbjct: 11  CRKRCSYCDFYLVAGTLR---MEDFFVALRRETAS--RASLLKGQTIGAIHFGGGTPSMA 65

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLD---VLMPYLHLPVQSGSDRI 302
           + S L   L ++  L           + +   +K     +     +  L L VQS S   
Sbjct: 66  SPSLLGSWLEQVASLASFAPDMEIALEANPEDLKGSAANEFHQAGVNRLSLGVQSFSPEK 125

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDI-AISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
           L S+ R H+    R+ +   R       ++S D I G PGE    ++  ++   +     
Sbjct: 126 LSSLGRAHS---PREAMAAARDAVRMFDSVSLDLICGVPGEDRGVWQDDLERAKESEAQH 182

Query: 362 AFSFKYSPRLGT 373
              +  S    T
Sbjct: 183 VSVYMLSLEPRT 194


>gi|320101954|ref|YP_004177545.1| Radical SAM domain-containing protein [Isosphaera pallida ATCC
           43644]
 gi|319749236|gb|ADV60996.1| Radical SAM domain protein [Isosphaera pallida ATCC 43644]
          Length = 694

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 48/293 (16%), Positives = 83/293 (28%), Gaps = 55/293 (18%)

Query: 157 EDKFERLSIVDGGYNRKRG--------VTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSL 207
            D    L      + R RG        +   +TI  GC   CTFC +   +G  I SRS 
Sbjct: 298 MDWIYDLPYTRRPHPRYRGEPIPAFEMIKDSVTIMRGCFGGCTFCSITAHQGRIIQSRSK 357

Query: 208 SQVVDEARKLID---------------NGVCEITLLGQNVNAWR----------GKGLDG 242
             ++ E RK+                   + ++        A             K L  
Sbjct: 358 ESILAELRKIGRDPEFKGVVSDIGGPTANMYQMRCTKPEAEAKCKRLSCVYPKVCKLLGT 417

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTT---SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
           +     +L+    +++G+ ++   +         S   +        +   L +  +  +
Sbjct: 418 DHGPVVELMRESRQVEGVRKVMVASGVRMDLAQQSPEYLDELAAH-HVSGQLKVAPEHVN 476

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIA----ISSDFIVGFPGETDDDFRATMDLVD 355
             +L  M +      +     + R           I   FI   PG   +        + 
Sbjct: 477 SGVLARMKKPDNID-FVGFTRKFREASARAGKNQRIVPYFIASHPGSDLEAMIELAVFLK 535

Query: 356 KIGY--AQAFSFKYSPRLGTPGSNML-----EQVDENV---KAERLLCLQKKL 398
           +  Y   Q   F   P      + M          E V   K  R   LQ+ L
Sbjct: 536 RNNYKPDQVQDFI--PAPFDIATCMYYTGIDPFTGEEVHSAKKLRDRKLQRAL 586


>gi|259507808|ref|ZP_05750708.1| oxygen-independent coproporphyrinogen III oxidase [Corynebacterium
           efficiens YS-314]
 gi|259164601|gb|EEW49155.1| oxygen-independent coproporphyrinogen III oxidase [Corynebacterium
           efficiens YS-314]
          Length = 398

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 35/139 (25%), Positives = 58/139 (41%), Gaps = 8/139 (5%)

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
           S     A  +       + L +QS S  +L+ ++RRHT           R+   D  ++ 
Sbjct: 121 SPEFFDALRESG--YNRISLGMQSASSSVLRVLDRRHTPGRPVAAAKEARAAGFD-HVNL 177

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM-----LEQVDENVKA 388
           D I G P ETD+D R T+D V +       ++      GT  +       L   DE+V A
Sbjct: 178 DMIYGTPTETDEDVRKTLDAVLEADVDHVSAYSLIVEDGTAMARKVRRGELPAPDEDVYA 237

Query: 389 ERLLCLQKKLREQQVSFND 407
           +R   + ++LR     + +
Sbjct: 238 DRYEMIDQRLRANGFDWYE 256


>gi|190891635|ref|YP_001978177.1| lipoate synthase [Rhizobium etli CIAT 652]
 gi|238692539|sp|B3PYS0|LIPA_RHIE6 RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|190696914|gb|ACE90999.1| lipoate synthase protein [Rhizobium etli CIAT 652]
          Length = 323

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 79/220 (35%), Gaps = 11/220 (5%)

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
           R +  ++ +    E     + G    +    F+ + E C + C FC V    G   +  +
Sbjct: 49  RAIVKEHKLVTVCEEAGCPNIGECWDKKHATFMIMGEICTRACAFCNV--ATGKPNALDM 106

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
           ++  + A+ + + G+  + +   +    R    DG    F  +++++        +   T
Sbjct: 107 AEPENVAKAVKEMGLSHVVITSVD----RDDLEDGGAEHFEKVIWAIRAASPATTIEILT 162

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
                    L +       +  +    +++ +   L ++      +   +++ R++ + P
Sbjct: 163 PDFLKKPGALERVVAAKPDVFNH---NMETVAGNYL-TVRPGARYFHSIRLLQRVKELDP 218

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
            +   S  +VG  GE  ++    MD +           +Y
Sbjct: 219 TMFTKSGIMVGL-GEERNEVLQLMDDLRTADVDFLTIGQY 257


>gi|167945968|ref|ZP_02533042.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 56

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/34 (44%), Positives = 23/34 (67%)

Query: 343 TDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
           T+ DF  T+ L++ IG+  ++SF YS R GTP +
Sbjct: 2   TEQDFNDTLKLIEAIGFDHSYSFIYSRRPGTPAA 35


>gi|124486444|ref|YP_001031060.1| extracellular solute-binding protein [Methanocorpusculum labreanum
           Z]
 gi|124363985|gb|ABN07793.1| Radical SAM N-terminal domain protein [Methanocorpusculum labreanum
           Z]
          Length = 612

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 44/263 (16%), Positives = 90/263 (34%), Gaps = 35/263 (13%)

Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE-ISRSLS 208
           +D  Y +    ++             +   +T   GC   C+FC + + +G E +SRS +
Sbjct: 278 LDIIYELPYTRKQHPAYKEPIPALTPIQFSITTHRGCFGACSFCAITHHQGKEIVSRSEA 337

Query: 209 QVVDEARKLIDNGVCEITLL---GQNVNAWRGKGLDGEKCTFSD---------------- 249
            ++ EA ++      + T+    G + N +       EK                     
Sbjct: 338 SILREAERIAKMPEFKGTISDLGGPSANMYACSCAKWEKNGPCLDKNCTTCPSMKLGTAE 397

Query: 250 ---LLYSLSEIKGLVR------LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300
              LL ++SEI+ +        +RY      +  D  ++   +   +  +L +  +  SD
Sbjct: 398 QISLLRNVSEIRKVKHVFISSGVRYDLIPKTEEGDRYLRELTE-RHISGHLKVAPEHISD 456

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS----DFIVGFPGETDDDFRATMDLVDK 356
           R+ + MN+      +     R  +++ D           +   PG   DD       + +
Sbjct: 457 RVTQLMNKPG-KAVFDAFCKRFDALQKDKLKRQYLVPYLMSSHPGCRIDDMVTLALYLRE 515

Query: 357 IGYAQAFSFKYSPRLGTPGSNML 379
            G        ++P   T  + M 
Sbjct: 516 KGMYTEQVQDFTPVPMTLSTAMY 538


>gi|116071832|ref|ZP_01469100.1| Elongator protein 3/MiaB/NifB [Synechococcus sp. BL107]
 gi|116065455|gb|EAU71213.1| Elongator protein 3/MiaB/NifB [Synechococcus sp. BL107]
          Length = 513

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 51/261 (19%), Positives = 93/261 (35%), Gaps = 27/261 (10%)

Query: 174 RGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVN 233
                 + +   C + C FC+  Y      + SL   +  A +        + LLG +V 
Sbjct: 187 WPDIHMVEVVRSCPELCRFCLASYLTLPFRTPSLDDGLIPAVEKGLTATKRLGLLGASVT 246

Query: 234 AWRGKGLDGEKCTFSDLLYSL--SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL 291
                        FS+LL  L      G  R+  ++     ++  L             L
Sbjct: 247 QH---------PQFSELLQWLDGDRFDG-TRISVSSVRAATVTPELATIL--SKRGSRSL 294

Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA-ISSDFIVGFPGETDDDFRAT 350
            + ++SGS+R+ + +N++ T           +     +  +    + G P ETDDD  AT
Sbjct: 295 TIAIESGSERMREVVNKKLTTEAIHAAARHAKQ--GGLTGLKLYGMAGLPTETDDDIEAT 352

Query: 351 MDLVDKIGYA------QAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVS 404
            +L+  +               + P+  TP         E  K  RL  L K+L+ + + 
Sbjct: 353 AELLLALKRDTKGLRLTLGVSTFVPKAQTP-FQWQGVRPEAEK--RLKRLAKQLKPKGIE 409

Query: 405 FNDACVG-QIIEVLIEKHGKE 424
           F     G  +I+ L+ +  + 
Sbjct: 410 FRPESYGWSVIQALLSRSDRR 430


>gi|224368197|ref|YP_002602360.1| radical SAM domain family protein [Desulfobacterium autotrophicum
           HRM2]
 gi|223690913|gb|ACN14196.1| radical SAM domain family protein [Desulfobacterium autotrophicum
           HRM2]
          Length = 359

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 39/199 (19%), Positives = 64/199 (32%), Gaps = 14/199 (7%)

Query: 173 KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS-QVVDEARKLI----DNGVCEITL 227
           K  V       +GC   C FC          +     Q+  +    +    D    E+  
Sbjct: 7   KPLVVPIFIPHQGCPHKCAFCDQSIITSERRALPHETQIRQQVETWLGYRGDRRSVELAF 66

Query: 228 LGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL 287
            G N           E  T   +   L   K +  +R +T         L  A       
Sbjct: 67  FGGNFLGL----TPHETRTLLQITQQLILEKKIHSVRCSTRPDTIHEQSLDMA---SQFT 119

Query: 288 MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDF 347
           +  + + VQS  D++L   NR HTA +  +    +   +  I      +VG PG+T D  
Sbjct: 120 LDTVEIGVQSMDDQVLLKANRGHTAQDTIRAAKLLDDYK--INKGMQMMVGLPGDTPDKA 177

Query: 348 RATMDLVDKIGYAQAFSFK 366
             T  ++  +  A    + 
Sbjct: 178 IETARVIADLKPAFVRIYP 196


>gi|163783923|ref|ZP_02178895.1| hypothetical protein HG1285_11622 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880808|gb|EDP74340.1| hypothetical protein HG1285_11622 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 303

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/188 (17%), Positives = 62/188 (32%), Gaps = 19/188 (10%)

Query: 188 KFCTFCV----VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
             CTFC      PY    E   ++   +++A          I                  
Sbjct: 37  GGCTFCNNISFSPYAMTRE---TVENQINDAISFYKKRFKNIK------GFLAYFQAYTN 87

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTS---HPRDMSDCLIKAHGDLDVLMP--YLHLPVQSG 298
                  L  + +           S    P  + + ++       V  P  ++   +Q+ 
Sbjct: 88  TYAPVHKLREIYDKAMEYDEIIGMSIGTRPDVVPEEVLDLISTYAVKKPEVWIEYGLQTA 147

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           +   L+S+NR H   ++   + R +  RP+I + +  IVG PG+T +D+  T  L   + 
Sbjct: 148 NINTLRSINRAHGVADFVDAVLRTKK-RPNIKVCAHMIVGLPGDTYEDYVETAKLFASLP 206

Query: 359 YAQAFSFK 366
                   
Sbjct: 207 IDGVKIHP 214


>gi|306841850|ref|ZP_07474532.1| lipoic acid synthetase [Brucella sp. BO2]
 gi|306288077|gb|EFM59474.1| lipoic acid synthetase [Brucella sp. BO2]
          Length = 322

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 36/256 (14%), Positives = 86/256 (33%), Gaps = 14/256 (5%)

Query: 112 AEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYN 171
              E+  R    V   +    + R+   + R     R +     +    E     + G  
Sbjct: 15  RHPEKAHRPDSEV---LKKPDWIRVKAPVSRGYGETREIVRSNKLVTVCEEAGCPNIGEC 71

Query: 172 RKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQN 231
            ++    F+ + E C + C FC +       +    ++  + A+ +   G+  + +   +
Sbjct: 72  WEKKHATFMIMGEICTRACAFCNISTGIPNAL--DPNEPENIAKAVKQMGLTHVVITSVD 129

Query: 232 VNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL 291
               R    DG    F++++ ++ E      +   T         L         +  + 
Sbjct: 130 ----RDDLADGGAHHFAEVIKAVREAAPATTIEILTPDFLRKEGALEIVVKARPDVFNH- 184

Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351
              +++   + LK +      +   +++ R++ + P I   S  +VG  GE  ++    M
Sbjct: 185 --NLETVPSKYLK-VRPGARYFHSIRLLQRVKELDPTIFTKSGIMVGL-GEERNEILQLM 240

Query: 352 DLVDKIGYAQAFSFKY 367
           D +           +Y
Sbjct: 241 DDLRSADVDFMTIGQY 256


>gi|269792489|ref|YP_003317393.1| Radical SAM domain-containing protein [Thermanaerovibrio
           acidaminovorans DSM 6589]
 gi|269100124|gb|ACZ19111.1| Radical SAM domain protein [Thermanaerovibrio acidaminovorans DSM
           6589]
          Length = 509

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 42/243 (17%), Positives = 84/243 (34%), Gaps = 26/243 (10%)

Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209
           ++   S     E  S      N   G +  L +Q GC + C FC + Y         L +
Sbjct: 198 LEVAKSDHISVEDASSAWIAPNGVFGDSVLLELQRGCRRACRFCTLTYCFSPLRRLPLEE 257

Query: 210 VVDEARKL---IDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
            V    +           I L+             G+     +L+  +  +   + + + 
Sbjct: 258 AVGVVERKFGPFRGWFGRIGLITPEA---------GDYPGLRELVERILAMD--MGISFA 306

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
           +     +   +I+A          L L  ++GS ++  S  +  T     +    + + R
Sbjct: 307 SLRLDSLDPFMIRALSS--RGGRSLTLAPEAGSLKLRLSCGKNFTDDMIVEKA--LLAKR 362

Query: 327 PDIA-ISSDFIVGFPGETDDDFRATMDL----VDKIGYA-QAFSFKYSPRLGTP--GSNM 378
             +  +   F++G PGE D D  A   L    + +           + P+ GTP  G++ 
Sbjct: 363 EGMGKLKLYFMLGLPGEEDQDLEAIGSLCGRILRESDLPLVVSLNAFVPKPGTPWGGASF 422

Query: 379 LEQ 381
           +++
Sbjct: 423 IDK 425


>gi|332218988|ref|XP_003258641.1| PREDICTED: lipoyl synthase, mitochondrial isoform 2 [Nomascus
           leucogenys]
          Length = 322

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 36/186 (19%), Positives = 67/186 (36%), Gaps = 15/186 (8%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLS--QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
           C + C FC V   R       L   +  + A+ + + G+  + L   +    R    DG 
Sbjct: 137 CTRGCRFCSVKTARKP---PPLDASEPYNTAKAIAEWGLDYVVLTSVD----RDDMPDGG 189

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPR-DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
               +  +  L E    + +   T   R D+      A   LDV    +    +  S   
Sbjct: 190 AEHIAKTVSYLKERNPKILVECLTPDFRGDLKAIEKVALSGLDVYAHNVETVPELQS--- 246

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
            K  + R    +  +++   + V+PD+   +  ++G  GE D+   ATM  + +      
Sbjct: 247 -KVRDPRANFDQSLRVLKHAKKVQPDVISKTSIMLGL-GENDEQVYATMKALREADVDCL 304

Query: 363 FSFKYS 368
              +Y 
Sbjct: 305 TLGQYM 310


>gi|332218986|ref|XP_003258640.1| PREDICTED: lipoyl synthase, mitochondrial isoform 1 [Nomascus
           leucogenys]
          Length = 372

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 36/186 (19%), Positives = 67/186 (36%), Gaps = 15/186 (8%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLS--QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
           C + C FC V   R       L   +  + A+ + + G+  + L   +    R    DG 
Sbjct: 137 CTRGCRFCSVKTARKP---PPLDASEPYNTAKAIAEWGLDYVVLTSVD----RDDMPDGG 189

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPR-DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
               +  +  L E    + +   T   R D+      A   LDV    +    +  S   
Sbjct: 190 AEHIAKTVSYLKERNPKILVECLTPDFRGDLKAIEKVALSGLDVYAHNVETVPELQS--- 246

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
            K  + R    +  +++   + V+PD+   +  ++G  GE D+   ATM  + +      
Sbjct: 247 -KVRDPRANFDQSLRVLKHAKKVQPDVISKTSIMLGL-GENDEQVYATMKALREADVDCL 304

Query: 363 FSFKYS 368
              +Y 
Sbjct: 305 TLGQYM 310


>gi|282854197|ref|ZP_06263534.1| radical SAM domain protein [Propionibacterium acnes J139]
 gi|282583650|gb|EFB89030.1| radical SAM domain protein [Propionibacterium acnes J139]
          Length = 650

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 65/404 (16%), Positives = 119/404 (29%), Gaps = 65/404 (16%)

Query: 71  HIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGP 130
            +     E        IR+ K      G + L+V                  + +  +G 
Sbjct: 166 AVLGDGEEACLEISEIIRDWKKEGCPGGREGLLVRLAATGGIYVPSFYDVEYLDDGTIGK 225

Query: 131 QTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190
               RL            V+D D     K   + + +  + R       + I  GC + C
Sbjct: 226 VAPNRLEA--PYTVSKHTVMDLDEWQYPKRPIVPVAETVHERYS-----VEIFRGCTRGC 278

Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFSD 249
            FC           RS+  +       +   G+ E+ LL   +++     +       +D
Sbjct: 279 RFCQAGIITRPVRERSIDAIAQMVDGGLQATGLEEVGLLS--LSSADHSEISDITKGLAD 336

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
                      V L   ++     +  L             L    + GS+R+ + +N++
Sbjct: 337 RYE-----GTNVSLSLPSTRVDTFNIDLANELSRNGR-RSGLTFAPEGGSERMRRVINKQ 390

Query: 310 HTAYEYRQIIDR-----IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI------- 357
            T  +  + +        R V+        F+ G P ETD+D     D+   +       
Sbjct: 391 VTEEDLIRTVATAFGNGWRQVK------LYFMCGLPTETDEDVLGIYDMASHVIATGRAA 444

Query: 358 --GYAQAFSF---KYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLR------------- 399
                   +     + P+  TP      Q   +    RL  L+  +R             
Sbjct: 445 AGRKDIRCTISIGGFVPKPHTP-FQWAAQASADEVDHRLSVLRDSIRADRQFGRSIGMRY 503

Query: 400 --------EQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWL 435
                   E  +S  D  VG +IE L     ++ G   G + + 
Sbjct: 504 HDGRPGIIEGLLSRGDRRVGNVIEALW----RDGGVFDGWNEYF 543


>gi|228469475|ref|ZP_04054479.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Porphyromonas uenonis 60-3]
 gi|228308990|gb|EEK17642.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Porphyromonas uenonis 60-3]
          Length = 371

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 37/200 (18%), Positives = 70/200 (35%), Gaps = 10/200 (5%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C   C +C              S  V+   + ++      T        + G G      
Sbjct: 11  CPTRCVYC---DFYSQSDLSLQSSFVEALCRELEIYHDRATWATPPRTIYLGGGTPSSLP 67

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL---MPYLHLPVQSGSDRI 302
               L   + +I+ L RL  T     + +   +       V       + L VQS SD  
Sbjct: 68  -LPLLERLMQQIRSLWRLDKTIEITIEANPEDVSPEWANGVALLGFNRISLGVQSWSDET 126

Query: 303 LKSMNRRHTAYEYRQIIDRIRSV-RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
           L+ ++RRH+A +  + ++ IR     +++I  D I   P   + D+  ++     +    
Sbjct: 127 LRFLHRRHSAAQAERAVNYIRQAGIHNVSI--DLIFALPEGYERDWTESLAHALALPVTH 184

Query: 362 AFSFKYSPRLGTPGSNMLEQ 381
             ++  +   GT    M E+
Sbjct: 185 FSAYGLTYERGTRLDRMRER 204


>gi|163782412|ref|ZP_02177410.1| hypothetical protein HG1285_06480 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882445|gb|EDP75951.1| hypothetical protein HG1285_06480 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 362

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 51/291 (17%), Positives = 104/291 (35%), Gaps = 34/291 (11%)

Query: 171 NRKRGVTAFLTIQEG--CDKFCTFCVVPYTR--GIEISRSLSQVVDEARKLIDNGVCEIT 226
           +  RG    L + +   CDK C +CV    R     +     ++     +L   G  +  
Sbjct: 32  STPRGKKPILKVMQSTYCDKNCDYCVFRRDRDSTPRLYIPPEELARGFMELYRKGRVQGL 91

Query: 227 LLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY---TTSHPRDMSDCLIKAHGD 283
            L             G        +  L +   ++R RY      H + M    ++   +
Sbjct: 92  FLS-----------SGIFVHPEVTMEKLIDTASILRRRYGYRGYIHLKLMPGVSLQTLEE 140

Query: 284 LDVLMPYLHLPVQSGSDRILKSMNRRHT----AYEYRQIIDRIRSVRPDIAISSDFIVGF 339
              L   + + +++ ++  LK + R  +           + R+       +  +  +VG 
Sbjct: 141 AVRLANRVSMNIEAPNEERLKGIARGKSLRKEILPNMVQVSRVLENYEGKSHITQVMVGV 200

Query: 340 PGETDDDFRATMDLV-DKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAE-RLLCLQKK 397
            GETD++   +   +  K+G  + +   + P   TP   + ++  E+ K E RL      
Sbjct: 201 NGETDEELLKSSQYLYRKVGLNRVYYSAFFPVRETP---LEDKAPESKKREHRLYQADFL 257

Query: 398 LREQQVSFNDA--CVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHN 446
           +R+   S+ +     G+    L E    ++     R+P    V LN  ++ 
Sbjct: 258 IRDYGFSWEELPFEEGR----LPEGKDPKEA-WAERNPNFFPVELNRADYE 303


>gi|332969710|gb|EGK08724.1| oxygen-independent coproporphyrinogen III oxidase [Kingella kingae
           ATCC 23330]
          Length = 607

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 36/239 (15%), Positives = 87/239 (36%), Gaps = 29/239 (12%)

Query: 156 VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC-VVPYTRGIEIS-----RSLSQ 209
             DK+  +      ++      A++ I   C   C FC         +IS     R +++
Sbjct: 33  PNDKWHTIWESKLPHSLDEDGLAYVHIPF-CANHCVFCGFYRNAWKDDISAGYTDRVIAE 91

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSH 269
           +  EA     +G  +    G                  +     L+ +          + 
Sbjct: 92  LKREAEIRTGSGKIQAVYFGGGTPT-------------ALHSRDLARLVEACYRYLPLAD 138

Query: 270 PRDMSDCLIKAHGDLDVL-------MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
             + +     +H D + +       +  + + VQ+    I + + R+H+  E R  ++++
Sbjct: 139 DCEFTLEGRMSHFDDEKIQAAISAGVNRISIGVQTFDTTIRRRLGRKHSGDEARAYLEKL 198

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
            S   D+   +D I G P +TD  ++  + +  ++  +   ++ ++     P + M+E+
Sbjct: 199 CSY--DVITVADLIFGLPAQTDKIWQNDIAIASQLPLSGLDTYAFNCYPFLPINRMIEK 255


>gi|218782637|ref|YP_002433955.1| radical SAM domain protein [Desulfatibacillum alkenivorans AK-01]
 gi|218764021|gb|ACL06487.1| Radical SAM domain protein [Desulfatibacillum alkenivorans AK-01]
          Length = 353

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 38/218 (17%), Positives = 70/218 (32%), Gaps = 19/218 (8%)

Query: 169 GYNRKRGVTAFLTIQE-GCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITL 227
               KR     + +   GC   C FC      G     S      E  + +         
Sbjct: 1   MEKEKRPFVIPIFLPHAGCPHQCVFCNQRAITGAARPFSAEDARAEVERYLSFPRKSK-- 58

Query: 228 LGQNVNAWRGKGLDG-EKCTFSDLLYSLSE------IKGLVRLRYTTSHPRDMSDCLIKA 280
            G  + ++ G    G  +    DLL   S+      + G+ R          +S  L++ 
Sbjct: 59  -GPTIISFYGGNFLGISRKRIRDLLDLASQYVNQGRVDGI-RFSTRPDTVSPLSLSLLEG 116

Query: 281 HGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFP 340
           +      +  + L VQS  + +L++  R HT  E R   + +R            ++G P
Sbjct: 117 YP-----VKTVELGVQSMDEEVLEASRRGHTVLEIRTAHELLREK--GYETGLQMMIGLP 169

Query: 341 GETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           G+      A+   +  +       +       +P + M
Sbjct: 170 GDDGAQSLASAREIAALSPDFVRIYPTVVLENSPLAEM 207


>gi|126173417|ref|YP_001049566.1| putative radical SAM protein [Shewanella baltica OS155]
 gi|304409341|ref|ZP_07390961.1| conserved hypothetical protein [Shewanella baltica OS183]
 gi|307303699|ref|ZP_07583452.1| conserved hypothetical protein [Shewanella baltica BA175]
 gi|125996622|gb|ABN60697.1| conserved hypothetical radical SAM protein [Shewanella baltica
           OS155]
 gi|304351859|gb|EFM16257.1| conserved hypothetical protein [Shewanella baltica OS183]
 gi|306912597|gb|EFN43020.1| conserved hypothetical protein [Shewanella baltica BA175]
          Length = 309

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 43/238 (18%), Positives = 76/238 (31%), Gaps = 34/238 (14%)

Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW--------RGKG 239
             CTFC V        S   + V+    + ++ G            A             
Sbjct: 43  GGCTFCNV-----ASFSHQTADVL-SITEQLEQGKSRYREAKPQAQADKFIAYFQAYTST 96

Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV--LMPYLHLPVQS 297
            D  +   +    ++    G +      + P  + D ++          +  +L L +Q+
Sbjct: 97  YDEYQVLMAKYDEAVK--DGEIVGLCVGTRPDCVPDNVLDLLASYQANGVDVWLELGLQT 154

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
             D  L+ +NR H    Y   + R RS    + + +  I+G P ET  D+ AT+  V + 
Sbjct: 155 AKDETLRKINRGHDFACYCDTVSRARSR--GLKVCTHLILGLPDETHSDYMATLAAVLQQ 212

Query: 358 GYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIE 415
           G             G+  +          KA R   L        +      VG++I 
Sbjct: 213 GVDGLKLHPLHVVEGSTMA----------KAWRSGRLPLL----SLEDYARSVGEMIR 256


>gi|50310195|ref|XP_455117.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|74636588|sp|Q6CLS2|LIPA_KLULA RecName: Full=Lipoyl synthase, mitochondrial; AltName: Full=Lipoate
           synthase; Short=LS; Short=Lip-syn; AltName: Full=Lipoic
           acid synthase; Flags: Precursor
 gi|49644253|emb|CAG97824.1| KLLA0F00836p [Kluyveromyces lactis]
          Length = 370

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 37/215 (17%), Positives = 80/215 (37%), Gaps = 13/215 (6%)

Query: 156 VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS-LSQVVDEA 214
            E K   +    GG ++ +     + + + C + C FC V   R    S    ++  + A
Sbjct: 105 EEAKCPNIGECWGGGDKSKATATIMLLGDTCTRGCRFCSVKTNRKP--SAPDPTEPENTA 162

Query: 215 RKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKGLVRLRYTTSHPRDM 273
             +   G+  + L   +    R   +DG     ++ +  +  +   ++    +     D+
Sbjct: 163 EAISRWGLGYVVLTTVD----RDDLVDGGAYHLAETVQKIKQKAPNILVETLSGDFRGDL 218

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
               + A   LDV    +   V++ +  +     RR T  +   +++  +   P +   +
Sbjct: 219 EMVKVMALSGLDVYAHNMET-VEALTPHVRD---RRATYRQSLSVLECAKKTVPTLVTKT 274

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
             ++G  GETD+    TM  +  IG       +Y 
Sbjct: 275 SVMLGL-GETDEQVLQTMKDLRAIGCDVITFGQYM 308


>gi|330826507|ref|YP_004389810.1| oxygen-independent coproporphyrinogen III oxidase [Alicycliphilus
           denitrificans K601]
 gi|329311879|gb|AEB86294.1| oxygen-independent coproporphyrinogen III oxidase [Alicycliphilus
           denitrificans K601]
          Length = 410

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/224 (15%), Positives = 73/224 (32%), Gaps = 13/224 (5%)

Query: 186 CDKFCTFCVV--PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
           C + C +C     +  G E    L +    A  + D       + G+ V      G    
Sbjct: 44  CLRKCPYCDFNSHHAPGGE---PLPEARYTAALVADLEAALPLVWGRTVQTIFIGGGTPS 100

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTT---SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300
                 +   LS+I+  +RL             +    +     D  +  L + VQS +D
Sbjct: 101 LFAPQSIDRLLSDIRARLRLEADCEVTLEANPGTFEKERFRAYRDAGVTRLSIGVQSFND 160

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
           R L+++ R H   +    ++           + D +   PG+T  +    M     +   
Sbjct: 161 RHLQALGRVHDRAQALAAVEEAAQAFE--TFNLDIMYALPGQTPAEQEQDMRQALALAPP 218

Query: 361 QAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVS 404
               +  +    T  +    ++ E+   ++   +  ++ E   +
Sbjct: 219 HISIYHLTIEPNTYFAKYPPRLPED---DQAYAMLDRITELTAA 259


>gi|254524933|ref|ZP_05136988.1| oxygen-independent coproporphyrinogen III oxidase [Stenotrophomonas
           sp. SKA14]
 gi|219722524|gb|EED41049.1| oxygen-independent coproporphyrinogen III oxidase [Stenotrophomonas
           sp. SKA14]
          Length = 469

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 58/276 (21%), Positives = 99/276 (35%), Gaps = 49/276 (17%)

Query: 186 CDKFCTFC----VVPYTRGIEISRSLSQVVDEARK---LIDNGVCEITLLGQNVNAWRGK 238
           C   C +C    V+   RG   S  +S+V+ EA       ++G   I L           
Sbjct: 71  CSSPCFYCGCNRVITRDRGRGHSY-VSRVLAEADLLAPQFEDGREVIQL----------- 118

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLR-YTTSHPRDMSDCLIKAHGDLDVL-------MPY 290
            L G    F D     + ++GL R   ++ S  RD S  L     D   +          
Sbjct: 119 HLGGGTPNFLDAEAMTTLVEGLRRRFDFSDSPQRDFSIELDPRFIDTHDVAMLARLGFNR 178

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI-AISSDFIVGFPGETDDDFRA 349
             L VQ     + +S+NR     +   I+   R     + +++ D I G PG++ + F  
Sbjct: 179 ASLGVQDFDPHVQESINRIQGVQQTLDILQACRDS--GMRSVNVDLIYGLPGQSLEGFGR 236

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERL------LCLQKKLREQQV 403
           T++ V  +   +   + Y+           +Q+DE     RL      L L     E+  
Sbjct: 237 TLERVLALRPDRLAVYGYAHLPHL--FRAQKQIDE----RRLPSPEDKLALLGLSVEKLS 290

Query: 404 SFNDACVGQIIEVLIEK---HGKEKGKL----VGRS 432
           +     +G     L E+     +  G+L    +G +
Sbjct: 291 AAGYQYIGMDHFALPEEDLSRAQRAGQLHRNFMGYT 326


>gi|189466476|ref|ZP_03015261.1| hypothetical protein BACINT_02851 [Bacteroides intestinalis DSM
           17393]
 gi|189434740|gb|EDV03725.1| hypothetical protein BACINT_02851 [Bacteroides intestinalis DSM
           17393]
          Length = 609

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 47/276 (17%), Positives = 94/276 (34%), Gaps = 54/276 (19%)

Query: 151 DTDYSVEDKFERLSIVDGGYNR---KRGVTAFLTIQEGCDKFCTFCVVPYTRGIE-ISRS 206
           + D+S +  + RL        R      +   + I  GC   C FC +   +G   +SRS
Sbjct: 278 ELDHSFDLPYTRLPHPKYKGKRIPAYDMIKFSVNIHRGCFGGCAFCTISAHQGKFIVSRS 337

Query: 207 LSQVVDEARKLIDNGVCEITLL---GQNVNAWRGKGLDGEKCT----------------- 246
              ++ E + L++    +  L    G + N +  +G D   C                  
Sbjct: 338 KESILKEVKALMELPDFKGYLSDLGGPSANMYHMRGNDEALCKKCKRPSCIHPKVCPNLN 397

Query: 247 -----FSDLLYSLSEIKGLVRLRY-----------------TTSHPRDMSDCLIKAHGDL 284
                  D+ +++  + G+ +                    T     + +  LI  H   
Sbjct: 398 SSHRPLLDIYHAVDALPGIKKSFIGSGVRYDLLLHRSKDPETNKSTAEYTRELIARH--- 454

Query: 285 DVLMPYLHLPVQSGSDRILKSMNRRHTA--YEYRQIIDRI-RSVRPDIAISSDFIVGFPG 341
             +   L +  +  S+R+L  M +   +   E+++I DRI R       +   FI   PG
Sbjct: 455 --VSGRLKVAPEHTSERVLSIMRKPSFSLFQEFKKIFDRINREEGLRQQLIPYFISSHPG 512

Query: 342 ETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
             ++D      +  ++ +       ++P   T  + 
Sbjct: 513 CREEDMAELAVITKRLDFQLEQVQDFTPTPMTVATE 548


>gi|158319763|ref|YP_001512270.1| putative radical SAM protein [Alkaliphilus oremlandii OhILAs]
 gi|158139962|gb|ABW18274.1| conserved hypothetical radical SAM protein [Alkaliphilus oremlandii
           OhILAs]
          Length = 318

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 36/190 (18%), Positives = 63/190 (33%), Gaps = 10/190 (5%)

Query: 188 KFCTFCVVPYTRGIEIS--RSLSQVVDEARKLIDNGVCEITLLG--QNVNAWRGKGLDGE 243
             CTFCV   T    +S    + + +   R+ I         +   QN +       D +
Sbjct: 44  GGCTFCVEGGTVFESLSNEFPVREQLTRTREHIRKKYKANKYIAYFQNFSNTYMPLEDFK 103

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
           +     ++  + EI    R         +    L     +   L   + L +QS +   L
Sbjct: 104 RYIEEAVMDEIVEIAISTRPDCIREEYLEFLSDL----RERTGLNISIELGLQSVNYHSL 159

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           K +NR HT  EY   +  I+      +I +  I+  P +  DD      ++  +   Q  
Sbjct: 160 KKINRGHTLGEYLDAVLSIKKY--GFSICTHLILNLPWDNMDDVIENAKIMSALKMDQIK 217

Query: 364 SFKYSPRLGT 373
                    T
Sbjct: 218 LHALYIMENT 227


>gi|332529866|ref|ZP_08405818.1| Radical SAM domain-containing protein [Hylemonella gracilis ATCC
           19624]
 gi|332040660|gb|EGI77034.1| Radical SAM domain-containing protein [Hylemonella gracilis ATCC
           19624]
          Length = 814

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 39/232 (16%), Positives = 76/232 (32%), Gaps = 32/232 (13%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDN--GVCEIT--LLGQNVNA 234
           + I  GC   CTFC +    G  I SRS   ++ E   + D   G   +   L G   N 
Sbjct: 439 VNIMRGCFGGCTFCSITEHEGRIIQSRSEDSIIQEVEDIRDKVKGFTGVISDLGGPTANM 498

Query: 235 WR----------------------GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
           +R                       + L+ +      +      +KG+ ++   +    D
Sbjct: 499 YRIGCKSPEIEAACRKPSCVYPGICQNLNTDHSALIKIYRRARALKGVKKILIGSGLRYD 558

Query: 273 MSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRRH--TAYEYRQIIDRI-RSVRP 327
           ++    +   +L    +  YL +  +      L  M +    +   ++Q+ ++       
Sbjct: 559 LAVKSPEYVKELVQHHVGGYLKIAPEHTEGGPLSKMMKPGIGSYDRFKQMFEKYSEEAGK 618

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
              +   FI   PG +D+D       + K G+       + P      + M 
Sbjct: 619 KQYLIPYFIAAHPGTSDEDMMNLAIWLKKNGFRADQVQTFYPSPMATATTMY 670


>gi|224370374|ref|YP_002604538.1| HemN2 [Desulfobacterium autotrophicum HRM2]
 gi|223693091|gb|ACN16374.1| HemN2 [Desulfobacterium autotrophicum HRM2]
          Length = 382

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 42/203 (20%), Positives = 72/203 (35%), Gaps = 19/203 (9%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C +C            S+   +   R  +   + EI +   +  A       G   
Sbjct: 14  CVRKCAYCDF---------YSIDD-LSLKRAFVKALLSEIAMCK-DRRAIVDTIYFGGGT 62

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCL------IKAHGDL-DVLMPYLHLPVQSG 298
               L   + EI   +   +T S   + +  +          G + D  +  L++ VQS 
Sbjct: 63  PSLLLPGQIQEILTAIGENFTVSKGCETTLEVNPGTVNADYFGKIQDSGINRLNIGVQSF 122

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
            D  L  M R H+A   RQ + + R    D  +  D I G PG+T+  +   +D      
Sbjct: 123 DDERLDFMGRIHSAAVARQALQQARDTGFD-NLGLDLIYGLPGDTEGAWVKDLDSALVFQ 181

Query: 359 YAQAFSFKYSPRLGTPGSNMLEQ 381
                 +  +   GTP   ++EQ
Sbjct: 182 PEHLSCYMLTYEPGTPMHRLVEQ 204


>gi|224368634|ref|YP_002602797.1| BioB2 [Desulfobacterium autotrophicum HRM2]
 gi|223691350|gb|ACN14633.1| BioB2 [Desulfobacterium autotrophicum HRM2]
          Length = 355

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 56/277 (20%), Positives = 99/277 (35%), Gaps = 29/277 (10%)

Query: 137 PELLERARFGKRV------VDTDYSVEDKFERLSIVDGGYNRKRG-----VTAFLTIQEG 185
           PELL     G +            S +++ ERL        RK       +  FL     
Sbjct: 11  PELLNHLAGGGKADRNQIKFLLSLSHDEEIERLFKTAREVRRKHFGDRVFLYGFLYFSTF 70

Query: 186 CDKFCTFCVVPYTR-GIEISRSLS-QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
           C   C FC        +   R    +++  AR++ D GV  I L    +        DG+
Sbjct: 71  CRNNCRFCQYRQANHALSRYRKNESEILAAAREMADTGVHLIDLT---MGEDPELFADGD 127

Query: 244 K--CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
           +     +D+   + +  GL         P  M D  +K   D  V     +   Q    R
Sbjct: 128 RGFERLADICRKVQQETGLP----VMISPGVMPDHALKMLADAGVT---WYACYQETHTR 180

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
            L     R       +++ +  + +  + I    + G  GE+ DD   +M+++  +   Q
Sbjct: 181 SL-YNRLRPGQDFDERMLRKRTARKLGMLIEEGLLTGV-GESVDDLATSMEMMADLDAHQ 238

Query: 362 AFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKL 398
                + P+ GTP  ++     EN+K   ++ + + L
Sbjct: 239 VRVMTFVPQKGTPMVDVPP--SENLKELIIIAVMRLL 273


>gi|167753889|ref|ZP_02426016.1| hypothetical protein ALIPUT_02174 [Alistipes putredinis DSM 17216]
 gi|167658514|gb|EDS02644.1| hypothetical protein ALIPUT_02174 [Alistipes putredinis DSM 17216]
          Length = 568

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 58/306 (18%), Positives = 100/306 (32%), Gaps = 56/306 (18%)

Query: 151 DTDYSVEDKFERLSIVD----GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SR 205
           + D+S +  +ER         G       +   + I  GC   C+FC +   +G  I SR
Sbjct: 272 ELDHSFDLPYERAPHPRYRGRGDIPAWEMIKHSVNIHRGCFGGCSFCTISAHQGKFITSR 331

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQ-------------------------NVNAWRGKGL 240
           S   ++ E  ++         L                             ++      L
Sbjct: 332 SEKSILREVERVTRMPDFRGYLSDIGAPSANMYRMGGRDRELCSKCRRPSCLHPKMCPNL 391

Query: 241 DGEKCTFSDLLYSLSEIKGLVR------LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP 294
           D +     DL   +  +KG+ +      +RY      D  D +I+ H         L + 
Sbjct: 392 DNDHRPLLDLYAKVRAVKGVKKAFIGSGIRYDLFDGSDYLDTVIRHHTSGR-----LKVA 446

Query: 295 VQSGSDRILKSMNRRHTAYEYRQI---IDRI--RSVRPDIAISSDFIVGFPGETDDDFRA 349
            +   D +LK M +      + ++    +RI  R   P   +   FI   PG T+ D R+
Sbjct: 447 PEHTEDAVLKLMRKPPFV-MFERLNADFNRICRREGLPY-QLIPYFISSHPGCTERDMRS 504

Query: 350 TMD-LVDKIGYAQAFSFKYSPRLGTPGSNML-----EQVDENVKAERLLCLQKKLREQQV 403
             D ++ K+ +        +P   T  S M          E V   R     +K R++  
Sbjct: 505 LADKVLGKLHFDLEQVQDLTPTPMTFSSVMFYTGENPYTGEKVYVARSQE--EKRRQKSY 562

Query: 404 SFNDAC 409
            F    
Sbjct: 563 FFRRKR 568


>gi|48478401|ref|YP_024107.1| Fe-S oxidoreductase [Picrophilus torridus DSM 9790]
 gi|48431049|gb|AAT43914.1| Fe-S oxidoreductase [Picrophilus torridus DSM 9790]
          Length = 558

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 36/228 (15%), Positives = 82/228 (35%), Gaps = 22/228 (9%)

Query: 167 DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEIT 226
           D    ++  +   + +  GC   C FC V           L ++  E    +  G+    
Sbjct: 234 DIPEVQRPVIKGMVEVMRGCGVGCDFCEVTL--RPLRYYPLEKIKKEIEVNVAGGIDHAW 291

Query: 227 LLGQNVNAWRG-KGLDGEKCTFSDLLYSLSEIKGL--VRLRYTTSHPRDMSDCLIKAHGD 283
           L    +  ++  K     +    DL  ++  IKG+      +           LIK+  +
Sbjct: 292 LHSDEIFEYKHEKMFTPNQDALEDLFKTVMSIKGVTGTNPTHGRISIPAAFPELIKSLSE 351

Query: 284 LDVLMPYLHLPVQSGSDRILKSMNRRHTAYE-----------YRQIIDR--IRSVRPDIA 330
           +    P   + +Q+G +    S+  +H   +           +++I+ +      +    
Sbjct: 352 IIHAGPDNWIGIQTGVETGSDSLAMKHMPNKTMPLRIGSDGTFQEIVWQGVYNETKYYWR 411

Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYA----QAFSFKYSPRLGTP 374
            +    VG   ETD+D   ++ +++++  +    + F F  +P +  P
Sbjct: 412 SAFTIQVGQQEETDEDNWDSIAMINRLSNSYVDGRPFEFTVTPLVNVP 459


>gi|17987142|ref|NP_539776.1| lipoyl synthase [Brucella melitensis bv. 1 str. 16M]
 gi|23502002|ref|NP_698129.1| lipoyl synthase [Brucella suis 1330]
 gi|62290037|ref|YP_221830.1| lipoyl synthase [Brucella abortus bv. 1 str. 9-941]
 gi|82699964|ref|YP_414538.1| lipoyl synthase [Brucella melitensis biovar Abortus 2308]
 gi|161619076|ref|YP_001592963.1| lipoyl synthase [Brucella canis ATCC 23365]
 gi|163843391|ref|YP_001627795.1| lipoyl synthase [Brucella suis ATCC 23445]
 gi|189024278|ref|YP_001935046.1| lipoyl synthase [Brucella abortus S19]
 gi|225627594|ref|ZP_03785631.1| lipoic acid synthetase [Brucella ceti str. Cudo]
 gi|225852624|ref|YP_002732857.1| lipoyl synthase [Brucella melitensis ATCC 23457]
 gi|237815547|ref|ZP_04594544.1| lipoic acid synthetase [Brucella abortus str. 2308 A]
 gi|254689350|ref|ZP_05152604.1| lipoyl synthase [Brucella abortus bv. 6 str. 870]
 gi|254693834|ref|ZP_05155662.1| lipoyl synthase [Brucella abortus bv. 3 str. Tulya]
 gi|254697483|ref|ZP_05159311.1| lipoyl synthase [Brucella abortus bv. 2 str. 86/8/59]
 gi|254701867|ref|ZP_05163695.1| lipoyl synthase [Brucella suis bv. 5 str. 513]
 gi|254704413|ref|ZP_05166241.1| lipoyl synthase [Brucella suis bv. 3 str. 686]
 gi|254706691|ref|ZP_05168519.1| lipoyl synthase [Brucella pinnipedialis M163/99/10]
 gi|254710201|ref|ZP_05172012.1| lipoyl synthase [Brucella pinnipedialis B2/94]
 gi|254730380|ref|ZP_05188958.1| lipoyl synthase [Brucella abortus bv. 4 str. 292]
 gi|256031695|ref|ZP_05445309.1| lipoyl synthase [Brucella pinnipedialis M292/94/1]
 gi|256044781|ref|ZP_05447685.1| lipoyl synthase [Brucella melitensis bv. 1 str. Rev.1]
 gi|256061207|ref|ZP_05451359.1| lipoyl synthase [Brucella neotomae 5K33]
 gi|256113680|ref|ZP_05454491.1| lipoyl synthase [Brucella melitensis bv. 3 str. Ether]
 gi|256159850|ref|ZP_05457583.1| lipoyl synthase [Brucella ceti M490/95/1]
 gi|256255096|ref|ZP_05460632.1| lipoyl synthase [Brucella ceti B1/94]
 gi|256257596|ref|ZP_05463132.1| lipoyl synthase [Brucella abortus bv. 9 str. C68]
 gi|256263883|ref|ZP_05466415.1| lipoyl synthase [Brucella melitensis bv. 2 str. 63/9]
 gi|256369551|ref|YP_003107061.1| lipoyl synthase [Brucella microti CCM 4915]
 gi|260168827|ref|ZP_05755638.1| lipoyl synthase [Brucella sp. F5/99]
 gi|260546590|ref|ZP_05822329.1| lipoyl synthase [Brucella abortus NCTC 8038]
 gi|260565616|ref|ZP_05836100.1| lipoyl synthase [Brucella melitensis bv. 1 str. 16M]
 gi|260566340|ref|ZP_05836810.1| lipoyl synthase [Brucella suis bv. 4 str. 40]
 gi|260754867|ref|ZP_05867215.1| lipoyl synthase [Brucella abortus bv. 6 str. 870]
 gi|260758084|ref|ZP_05870432.1| lipoyl synthase [Brucella abortus bv. 4 str. 292]
 gi|260761908|ref|ZP_05874251.1| lipoyl synthase [Brucella abortus bv. 2 str. 86/8/59]
 gi|260883879|ref|ZP_05895493.1| lipoyl synthase [Brucella abortus bv. 9 str. C68]
 gi|261214118|ref|ZP_05928399.1| lipoyl synthase [Brucella abortus bv. 3 str. Tulya]
 gi|261222291|ref|ZP_05936572.1| lipoyl synthase [Brucella ceti B1/94]
 gi|261314152|ref|ZP_05953349.1| lipoyl synthase [Brucella pinnipedialis M163/99/10]
 gi|261317759|ref|ZP_05956956.1| lipoyl synthase [Brucella pinnipedialis B2/94]
 gi|261325215|ref|ZP_05964412.1| lipoyl synthase [Brucella neotomae 5K33]
 gi|261752430|ref|ZP_05996139.1| lipoyl synthase [Brucella suis bv. 5 str. 513]
 gi|261755090|ref|ZP_05998799.1| lipoyl synthase [Brucella suis bv. 3 str. 686]
 gi|261758315|ref|ZP_06002024.1| lipoyl synthase [Brucella sp. F5/99]
 gi|265988790|ref|ZP_06101347.1| lipoyl synthase [Brucella pinnipedialis M292/94/1]
 gi|265991205|ref|ZP_06103762.1| lipoyl synthase [Brucella melitensis bv. 1 str. Rev.1]
 gi|265995041|ref|ZP_06107598.1| lipoyl synthase [Brucella melitensis bv. 3 str. Ether]
 gi|265998255|ref|ZP_06110812.1| lipoyl synthase [Brucella ceti M490/95/1]
 gi|294852462|ref|ZP_06793135.1| lipoyl synthase [Brucella sp. NVSL 07-0026]
 gi|297248438|ref|ZP_06932156.1| lipoyl synthase [Brucella abortus bv. 5 str. B3196]
 gi|54037739|sp|P65282|LIPA_BRUSU RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|54041431|sp|P65281|LIPA_BRUME RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|75496758|sp|Q57D15|LIPA_BRUAB RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|123768454|sp|Q2YPV8|LIPA_BRUA2 RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|189046596|sp|A9M5D7|LIPA_BRUC2 RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|189046597|sp|B0CGS4|LIPA_BRUSI RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|238689371|sp|B2S5X5|LIPA_BRUA1 RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|254809178|sp|C0RJ95|LIPA_BRUMB RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|17982807|gb|AAL52040.1| lipoic acid synthetase [Brucella melitensis bv. 1 str. 16M]
 gi|23347953|gb|AAN30044.1| lipoic acid synthetase [Brucella suis 1330]
 gi|62196169|gb|AAX74469.1| LipA, lipoic acid synthetase [Brucella abortus bv. 1 str. 9-941]
 gi|82616065|emb|CAJ11103.1| Lipoate synthase:Elongator protein 3/MiaB/NifB:Radical SAM
           [Brucella melitensis biovar Abortus 2308]
 gi|161335887|gb|ABX62192.1| lipoic acid synthetase [Brucella canis ATCC 23365]
 gi|163674114|gb|ABY38225.1| lipoic acid synthetase [Brucella suis ATCC 23445]
 gi|189019850|gb|ACD72572.1| Lipoate synthase [Brucella abortus S19]
 gi|225617599|gb|EEH14644.1| lipoic acid synthetase [Brucella ceti str. Cudo]
 gi|225640989|gb|ACO00903.1| lipoic acid synthetase [Brucella melitensis ATCC 23457]
 gi|237788845|gb|EEP63056.1| lipoic acid synthetase [Brucella abortus str. 2308 A]
 gi|255999713|gb|ACU48112.1| lipoyl synthase [Brucella microti CCM 4915]
 gi|260095640|gb|EEW79517.1| lipoyl synthase [Brucella abortus NCTC 8038]
 gi|260151684|gb|EEW86778.1| lipoyl synthase [Brucella melitensis bv. 1 str. 16M]
 gi|260155858|gb|EEW90938.1| lipoyl synthase [Brucella suis bv. 4 str. 40]
 gi|260668402|gb|EEX55342.1| lipoyl synthase [Brucella abortus bv. 4 str. 292]
 gi|260672340|gb|EEX59161.1| lipoyl synthase [Brucella abortus bv. 2 str. 86/8/59]
 gi|260674975|gb|EEX61796.1| lipoyl synthase [Brucella abortus bv. 6 str. 870]
 gi|260873407|gb|EEX80476.1| lipoyl synthase [Brucella abortus bv. 9 str. C68]
 gi|260915725|gb|EEX82586.1| lipoyl synthase [Brucella abortus bv. 3 str. Tulya]
 gi|260920875|gb|EEX87528.1| lipoyl synthase [Brucella ceti B1/94]
 gi|261296982|gb|EEY00479.1| lipoyl synthase [Brucella pinnipedialis B2/94]
 gi|261301195|gb|EEY04692.1| lipoyl synthase [Brucella neotomae 5K33]
 gi|261303178|gb|EEY06675.1| lipoyl synthase [Brucella pinnipedialis M163/99/10]
 gi|261738299|gb|EEY26295.1| lipoyl synthase [Brucella sp. F5/99]
 gi|261742183|gb|EEY30109.1| lipoyl synthase [Brucella suis bv. 5 str. 513]
 gi|261744843|gb|EEY32769.1| lipoyl synthase [Brucella suis bv. 3 str. 686]
 gi|262552723|gb|EEZ08713.1| lipoyl synthase [Brucella ceti M490/95/1]
 gi|262766154|gb|EEZ11943.1| lipoyl synthase [Brucella melitensis bv. 3 str. Ether]
 gi|263001989|gb|EEZ14564.1| lipoyl synthase [Brucella melitensis bv. 1 str. Rev.1]
 gi|263094014|gb|EEZ17948.1| lipoyl synthase [Brucella melitensis bv. 2 str. 63/9]
 gi|264660987|gb|EEZ31248.1| lipoyl synthase [Brucella pinnipedialis M292/94/1]
 gi|294821051|gb|EFG38050.1| lipoyl synthase [Brucella sp. NVSL 07-0026]
 gi|297175607|gb|EFH34954.1| lipoyl synthase [Brucella abortus bv. 5 str. B3196]
 gi|326409143|gb|ADZ66208.1| Lipoate synthase [Brucella melitensis M28]
 gi|326538851|gb|ADZ87066.1| lipoic acid synthetase [Brucella melitensis M5-90]
          Length = 322

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 36/256 (14%), Positives = 86/256 (33%), Gaps = 14/256 (5%)

Query: 112 AEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYN 171
              E+  R    V   +    + R+   + R     R +     +    E     + G  
Sbjct: 15  RHPEKAHRPDNEV---LKKPDWIRVKAPVSRGYGETREIVRSNKLVTVCEEAGCPNIGEC 71

Query: 172 RKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQN 231
            ++    F+ + E C + C FC +       +    ++  + A+ +   G+  + +   +
Sbjct: 72  WEKKHATFMIMGEICTRACAFCNISTGIPNAL--DPNEPENIAKAVKQMGLTHVVITSVD 129

Query: 232 VNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL 291
               R    DG    F++++ ++ E      +   T         L         +  + 
Sbjct: 130 ----RDDLADGGAHHFAEVIKAVREAAPATTIEILTPDFLRKEGALEIVVKARPDVFNH- 184

Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351
              +++   + LK +      +   +++ R++ + P I   S  +VG  GE  ++    M
Sbjct: 185 --NLETVPSKYLK-VRPGARYFHSIRLLQRVKELDPTIFTKSGIMVGL-GEERNEILQLM 240

Query: 352 DLVDKIGYAQAFSFKY 367
           D +           +Y
Sbjct: 241 DDLRSADVDFMTIGQY 256


>gi|146296038|ref|YP_001179809.1| coproporphyrinogen III oxidase [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145409614|gb|ABP66618.1| coproporphyrinogen III oxidase, anaerobic [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 486

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 38/195 (19%), Positives = 76/195 (38%), Gaps = 17/195 (8%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVD-EARKLIDNGVCEITLLGQNVNAWRGKGLDGE- 243
           C   C +C        E+++ +  ++    + L+        L+ +N N        G  
Sbjct: 179 CPTKCLYCSFSC---HELTKRIESLLSLYTQALLTELEKTYKLIEENKNKIVAIYFGGGS 235

Query: 244 ---------KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMP-YLHL 293
                    K  F  L  +L ++K +    +    P  ++  L++            L +
Sbjct: 236 PAVIGVQNIKRIFESLFANL-DVKDIRETTFEAGRPDTINRELLELLALYKKDFNIRLCI 294

Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
             Q+ +D+ LK + R HT  + ++  +  +    +  I+SD I+G P E ++DF+ T+  
Sbjct: 295 NPQTSNDQTLKIIGRNHTFDDIKKAFELAKEYGFE-NINSDVILGLPNEIEEDFKKTIYD 353

Query: 354 VDKIGYAQAFSFKYS 368
           V  +G A       S
Sbjct: 354 VLNLGPASITVHTLS 368


>gi|324511010|gb|ADY44596.1| Lipoyl synthase [Ascaris suum]
          Length = 368

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/190 (15%), Positives = 60/190 (31%), Gaps = 23/190 (12%)

Query: 186 CDKFCTFCVVPYTRGIEISRSL----SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD 241
           C + C FC V   R     R       +    A  + + GV  +     +    R    D
Sbjct: 128 CTRGCRFCSVKTAR-----RPPPLDVDEPRKTAEAVAEWGVPYVVFTSVD----RDDIAD 178

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
           G     ++ +  + E      +                      V+   L +   +    
Sbjct: 179 GGASHIAETVRRVKEACPKTLVECLVPDFGG------SLESVETVVCSGLDVYAHNMETV 232

Query: 302 ILKSMNRRHTAYEYR---QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
              +   R    +Y    ++++  + VRPD+   +  ++G   E ++  + TM  + +IG
Sbjct: 233 RRLTPWVRDPRAKYEQSMKVLEHAKKVRPDVVTKTSLMLGLGEEDEEVIQ-TMKELREIG 291

Query: 359 YAQAFSFKYS 368
                  +Y 
Sbjct: 292 VDALTLGQYM 301


>gi|291518575|emb|CBK73796.1| Coproporphyrinogen III oxidase and related Fe-S oxidoreductases
           [Butyrivibrio fibrisolvens 16/4]
          Length = 479

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 37/206 (17%), Positives = 71/206 (34%), Gaps = 28/206 (13%)

Query: 174 RGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVN 233
            G + ++ I   C   C +C          S  +     +    ID    E+    +   
Sbjct: 154 NGYSVYIGIPF-CPSTCLYCSFT-------SYPIGLWTKKLDDYIDALEKEMAFTAE--- 202

Query: 234 AWRGKGLD----GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD----------MSDCLIK 279
           A +GK L     G     S     L  +  LV   + TS   +          ++   ++
Sbjct: 203 ACKGKSLTTIYIGGGTPTSLDAEHLERLLTLVDRYFNTSDLLEYTIEAGRPDSITLEKLQ 262

Query: 280 AHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGF 339
              +    +  + +  Q+ + + L  + R H   +  ++    R +     I+ D I+G 
Sbjct: 263 VMKNHP--VTRISINPQTMNQKTLDLIGRFHKVEDIHRVFGWARELGFK-NINMDLILGL 319

Query: 340 PGETDDDFRATMDLVDKIGYAQAFSF 365
           PGET +D   T+  V+K+        
Sbjct: 320 PGETIEDVAYTLSEVEKLAPDNLTVH 345


>gi|255690240|ref|ZP_05413915.1| radical SAM domain protein [Bacteroides finegoldii DSM 17565]
 gi|260624260|gb|EEX47131.1| radical SAM domain protein [Bacteroides finegoldii DSM 17565]
          Length = 379

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/221 (12%), Positives = 68/221 (30%), Gaps = 37/221 (16%)

Query: 169 GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI-EISR-SLSQVVDEARKLIDNGVCEIT 226
            +  K  +   + I   C   C +C +       E  R +   ++D  ++  ++G     
Sbjct: 45  HFGNKIYIRGLIEISNCCRNNCYYCGIRKGNPNIERYRLTQESILDCCKQGYESGFRTFV 104

Query: 227 LLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV 286
           L G            GE    +D          + R+              +        
Sbjct: 105 LQG------------GEDPVLTD--------DKIERIVTNIRQEYPDCAITLSLGEKSRN 144

Query: 287 LMPYLHLPVQSGSDRILKSMNRRHTAYEY----------RQIIDRIRSVRP-DIAISSDF 335
                    ++G++R L   +  +    Y          ++ +  ++ ++       +  
Sbjct: 145 TYERF---FKAGANRYL-LRHETYNEAHYQQLHPAEMSGKRRLQCLQDLKDIGYQTGTGI 200

Query: 336 IVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
           +VG PG+T +D    +  ++++         + P   TP +
Sbjct: 201 MVGSPGQTVEDIIEDILFIERLRPEMIGIGPFLPHHDTPFA 241


>gi|254410480|ref|ZP_05024259.1| radical SAM domain protein [Microcoleus chthonoplastes PCC 7420]
 gi|196182686|gb|EDX77671.1| radical SAM domain protein [Microcoleus chthonoplastes PCC 7420]
          Length = 890

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 44/256 (17%), Positives = 87/256 (33%), Gaps = 36/256 (14%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVD-EARKLIDNGVCEITLLGQNVNAWRGK 238
           + ++ GC + C FC               +VVD  A+ +   G  E +LL  + + +   
Sbjct: 259 IEVRRGCTRGCRFCQPGMLTRPARDVEPEKVVDAIAKGMGATGYNEFSLLSLSCSDYLSL 318

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
              G +        ++S       L   +       + +    G        L    ++G
Sbjct: 319 PAVGLEVKNRLKNENIS-------LSLPSQRVDRFDENIANIIGGTRK--SGLTFAPEAG 369

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDD---FRATMDLV- 354
           + R+   +N+  T  E  + +        D  +   F++G PGETD D      T+  + 
Sbjct: 370 TQRMRDIVNKGLTNEELLRGVKTAFEQGWD-KVKLYFMIGLPGETDADVIGIAETVRWLQ 428

Query: 355 --------DKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQ----- 401
                    + G+       ++P+  TP         E ++ + L  L+   R       
Sbjct: 429 QECRASGRKRFGF-NITISNFTPKPHTPFQWHSVSTSEFIRKQEL--LRDAFRRIKGVKV 485

Query: 402 -----QVSFNDACVGQ 412
                ++S  +  VG+
Sbjct: 486 NYTDVRISAMEDFVGR 501


>gi|116252005|ref|YP_767843.1| lipoyl synthase [Rhizobium leguminosarum bv. viciae 3841]
 gi|123081924|sp|Q1MH26|LIPA_RHIL3 RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|115256653|emb|CAK07741.1| putative lipoyl synthase [Rhizobium leguminosarum bv. viciae 3841]
          Length = 323

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 79/220 (35%), Gaps = 11/220 (5%)

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
           R +  ++ +    E     + G    +    F+ + E C + C FC V    G   +  +
Sbjct: 49  RAIVKEHKLVTVCEEAGCPNIGECWDKKHATFMIMGEICTRACAFCNV--ATGKPNALDM 106

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
           ++  + A+ + + G+  + +   +    R    DG    F  +++++     +  +   T
Sbjct: 107 AEPENVAKAVKEMGLSHVVITSVD----RDDLEDGGAEHFEKVIWAIRAASPMTTIEILT 162

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
                    L +       +  +    +++     L ++      +   +++ R++ + P
Sbjct: 163 PDFLKKPGALERVVAAKPDVFNH---NMETVPGNYL-TVRPGARYFHSVRLLQRVKELDP 218

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
            +   S  +VG  GE  ++    MD +           +Y
Sbjct: 219 TMFTKSGIMVGL-GEERNEVLQLMDDLRTADVDFLTIGQY 257


>gi|327191421|gb|EGE58444.1| lipoate synthase protein [Rhizobium etli CNPAF512]
          Length = 322

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 79/220 (35%), Gaps = 11/220 (5%)

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
           R +  ++ +    E     + G    +    F+ + E C + C FC V    G   +  +
Sbjct: 49  RAIVKEHKLVTVCEEAGCPNIGECWDKKHATFMIMGEICTRACAFCNV--ATGKPNALDM 106

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
           ++  + A+ + + G+  + +   +    R    DG    F  +++++        +   T
Sbjct: 107 AEPENVAKAVREMGLSHVVITSVD----RDDLEDGGAEHFEKVIWAIRAASPATTIEILT 162

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
                    L +       +  +    +++ +   L ++      +   +++ R++ + P
Sbjct: 163 PDFLKKPGALERVVAAKPDVFNH---NMETVAGNYL-TVRPGARYFHSIRLLQRVKELDP 218

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
            +   S  +VG  GE  ++    MD +           +Y
Sbjct: 219 TMFTKSGIMVGL-GEERNEVLQLMDDLRTADVDFLTIGQY 257


>gi|319649839|ref|ZP_08003990.1| Mg-protoporphyrin IX monomethyl ester oxidative cyclase [Bacillus
           sp. 2_A_57_CT2]
 gi|317398419|gb|EFV79106.1| Mg-protoporphyrin IX monomethyl ester oxidative cyclase [Bacillus
           sp. 2_A_57_CT2]
          Length = 582

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 45/250 (18%), Positives = 82/250 (32%), Gaps = 18/250 (7%)

Query: 129 GPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGY--NRKRGVTAFLTIQEGC 186
           G      +  L  R   G+  ++   +  D  E  S                ++    GC
Sbjct: 128 GTMNMENVHGLAFR-ENGQVRINPQRNKLDLRELPSPFRFEEDIPHLSKRVTYIETSRGC 186

Query: 187 DKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT 246
              C FC+     G        ++ D+ R L+ NG   +  + +  N  R   L+  +  
Sbjct: 187 PFSCQFCLSSIEVG-VRYFDREKIKDDIRYLMRNGAKTLKFVDRTFNISRSYALEMFQFL 245

Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAH-GDLDVLMPYLHLPVQSGSDRILKS 305
             + L       G V     T+    M   +I+    +    +    + VQS +D   + 
Sbjct: 246 IDEHL------PGTVFQFEITADI--MRPEVIEFLNKEAPAGLFRFEIGVQSTNDYTNEL 297

Query: 306 MNRRHTAYEYRQIIDRIRSVRPD--IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           + R+     + ++   +  V+    I    D I G P E  D F+ T + V  +   +  
Sbjct: 298 VMRK---QNFNKLCRTVTMVKDGGKIDQHLDLIAGLPEEDYDSFKRTFNDVFAMRPEELQ 354

Query: 364 SFKYSPRLGT 373
                   GT
Sbjct: 355 LGFLKMLRGT 364


>gi|306843989|ref|ZP_07476584.1| lipoic acid synthetase [Brucella sp. BO1]
 gi|306275744|gb|EFM57468.1| lipoic acid synthetase [Brucella sp. BO1]
          Length = 322

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 36/256 (14%), Positives = 86/256 (33%), Gaps = 14/256 (5%)

Query: 112 AEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYN 171
              E+  R    V   +    + R+   + R     R +     +    E     + G  
Sbjct: 15  RHPEKAHRPDSEV---LKKPDWIRVKAPVSRGYGETREIVRSNKLVTVCEEAGCPNIGEC 71

Query: 172 RKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQN 231
            ++    F+ + E C + C FC +       +    ++  + A+ +   G+  + +   +
Sbjct: 72  WEKKHATFMIMGEICTRACAFCNISTGIPNAL--DPNEPENIAKAVKQMGLTHVVITSVD 129

Query: 232 VNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL 291
               R    DG    F++++ ++ E      +   T         L         +  + 
Sbjct: 130 ----RDDLTDGGAHHFAEVIKAVREAAPATTIEILTPDFLRKEGALEIVVKARPDVFNH- 184

Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351
              +++   + LK +      +   +++ R++ + P I   S  +VG  GE  ++    M
Sbjct: 185 --NLETVPSKYLK-VRPGARYFHSIRLLQRVKELDPTIFTKSGIMVGL-GEERNEILQLM 240

Query: 352 DLVDKIGYAQAFSFKY 367
           D +           +Y
Sbjct: 241 DDLRSADVDFMTIGQY 256


>gi|262274737|ref|ZP_06052548.1| lipoate synthase [Grimontia hollisae CIP 101886]
 gi|262221300|gb|EEY72614.1| lipoate synthase [Grimontia hollisae CIP 101886]
          Length = 321

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/182 (15%), Positives = 62/182 (34%), Gaps = 10/182 (5%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V    G  ++    +    A+ + D  +  + +   +    R    DG   
Sbjct: 94  CTRRCPFCDV--AHGRPLAPDAQEPQKLAQTIRDMKLKYVVVTSVD----RDDLRDGGAQ 147

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
            F+D +  +  +   +R+       R   D  +    D     P +       + R+ + 
Sbjct: 148 HFADCIREIRALNPDIRIETLVPDFRGRMDTALDILRDNP---PDVFNHNLETAPRLYRK 204

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
                      +++ R   + PD+   S  ++G  GET ++    +  +   G       
Sbjct: 205 ARPGANYKWSLELLKRFGEMHPDVPTKSGLMMGL-GETKEEIIDVLKDLRTHGVTMLTLG 263

Query: 366 KY 367
           +Y
Sbjct: 264 QY 265


>gi|258623138|ref|ZP_05718150.1| oxygen-independent coproporphyrinogen III oxidase [Vibrio mimicus
           VM573]
 gi|258584621|gb|EEW09358.1| oxygen-independent coproporphyrinogen III oxidase [Vibrio mimicus
           VM573]
          Length = 480

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 53/298 (17%), Positives = 104/298 (34%), Gaps = 24/298 (8%)

Query: 127 VVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVD----GGYNRKRGVTAFLTI 182
           VV  Q       +L++  +      +  +  +  E  +I D         +R ++ ++ I
Sbjct: 23  VVPSQQIVWDQAILDKYNYSGPRYTSYPTAVEFHEAFTIADFDMACTQYPERPLSLYIHI 82

Query: 183 QEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG 242
              C K C +C          S    + +D     I        L G+NV         G
Sbjct: 83  PF-CHKLCYYCGCNKVITRH-SHKADEYLDVLEHEIRQ--RASLLTGRNVTQLH---FGG 135

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL-------MPYLHLPV 295
              TF      +S +  L+R  +  +   ++S  +      LDVL          + + V
Sbjct: 136 GTPTF-LTNAQISRLMTLLRSEFDFADDAEISIEIDPREIQLDVLDHLRQEGFNRVSIGV 194

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS-DFIVGFPGETDDDFRATMDLV 354
           Q  +  + K +NR         +++R + +      ++ D I G P +T + F  T+  V
Sbjct: 195 QDFNKEVQKLVNREQDEQFIFALVERAKQL--GFRSTNLDLIYGLPKQTAETFAQTLQQV 252

Query: 355 DKIGYAQAFSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVG 411
             +   +   F Y+       +   ++  D     E+L  LQ+ +     +     +G
Sbjct: 253 LTMQPGRLSVFNYAHMPQLFAAQRKIKDADLPAAEEKLAILQQTIATLTGAGYQ-FIG 309


>gi|255746950|ref|ZP_05420895.1| hypothetical protein VCH_003349 [Vibrio cholera CIRS 101]
 gi|262161506|ref|ZP_06030616.1| hypothetical protein VIG_002758 [Vibrio cholerae INDRE 91/1]
 gi|262168358|ref|ZP_06036055.1| hypothetical protein VIJ_001541 [Vibrio cholerae RC27]
 gi|255735352|gb|EET90752.1| hypothetical protein VCH_003349 [Vibrio cholera CIRS 101]
 gi|262023250|gb|EEY41954.1| hypothetical protein VIJ_001541 [Vibrio cholerae RC27]
 gi|262028817|gb|EEY47471.1| hypothetical protein VIG_002758 [Vibrio cholerae INDRE 91/1]
          Length = 312

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/124 (25%), Positives = 50/124 (40%), Gaps = 12/124 (9%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +L L +Q+  D+ LK +NR H    Y +I  + R++   I + +  IVG PGE   +   
Sbjct: 141 WLELGLQTAHDQTLKRINRGHDFACYAEITAKARAL--GIKVCTHLIVGLPGEERTENLT 198

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDAC 409
           T+  V K+G             G+  +          KA R   L    ++Q VS     
Sbjct: 199 TLQQVLKVGTDGIKLHGLHIVEGSTMA----------KAWRAGRLTVLDQDQYVSIACEM 248

Query: 410 VGQI 413
           +   
Sbjct: 249 IRST 252


>gi|114561875|ref|YP_749388.1| lipoyl synthase [Shewanella frigidimarina NCIMB 400]
 gi|122300734|sp|Q087L5|LIPA_SHEFN RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|114333168|gb|ABI70550.1| lipoic acid synthetase [Shewanella frigidimarina NCIMB 400]
          Length = 321

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/184 (14%), Positives = 55/184 (29%), Gaps = 14/184 (7%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V    G  +     +    A+ + D  +  + +   +    R    DG   
Sbjct: 94  CTRRCPFCDV--AHGRPLKADADEPKKLAQTIKDMKLKYVVITSVD----RDDLRDGGAQ 147

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLD--VLMPYLHLPVQSGSDRIL 303
            F+D +  +  +   +++       R   D  +         V    L            
Sbjct: 148 HFADCIREIRLLNPEIKIETLVPDFRGRIDAALDILATEPPDVFNHNLETAPAHY----- 202

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           +             ++ R +   P I   S  ++G  GET+++    +  +         
Sbjct: 203 RKARPGANYQWSLDLLKRFKERHPTIPTKSGLMMGL-GETNEEIAEVLRDLRAHNVEMLT 261

Query: 364 SFKY 367
             +Y
Sbjct: 262 LGQY 265


>gi|204789668|gb|ACI02044.1| hypothetical protein [uncultured bacterium]
          Length = 334

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 41/193 (21%), Positives = 74/193 (38%), Gaps = 19/193 (9%)

Query: 174 RGVTAFLTIQEGCDKFCTFCV-VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNV 232
           RG + ++ I   C   C +C            R + + ++  +K ID    +      + 
Sbjct: 152 RGYSIYIGIPF-CPTTCLYCSFTSNAIAKWRDR-VDEYINCLKKEIDYVSEQFADKVIDT 209

Query: 233 NAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDC--------LIKAHGDL 284
               G    G   T   L Y + E+   VR +   S  R+++            K    L
Sbjct: 210 VYVGG----GTPTTL--LPYQIDELMSYVREKLDLSSCREITVEAGRPDSITEDKLASLL 263

Query: 285 DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETD 344
              +  + +  Q+ +D  LK + R H+  E+R+     R    +I   +D I+G PGE +
Sbjct: 264 RNGVTRISVNPQTMNDETLKLIGRAHSVDEFREAFFLARKYFDNIN--TDLILGLPGEDE 321

Query: 345 DDFRATMDLVDKI 357
              + T D + K+
Sbjct: 322 AKVKYTFDEIAKL 334


>gi|257058571|ref|YP_003136459.1| radical SAM protein [Cyanothece sp. PCC 8802]
 gi|256588737|gb|ACU99623.1| Radical SAM domain protein [Cyanothece sp. PCC 8802]
          Length = 857

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 47/256 (18%), Positives = 92/256 (35%), Gaps = 36/256 (14%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGK 238
           L ++ GC + C FC               Q+++   K I   G  E +LL  + + +   
Sbjct: 256 LEVRRGCTRGCRFCQPGMLTRPARDVEPEQIINTIEKGIRETGFNEFSLLSLSCSDYLSL 315

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
              G +        ++S       L   +       + +    G +      L    ++G
Sbjct: 316 PSVGIEIKNRLKNENIS-------LSLPSQRVDRFDENIANIIGGIRQ--SSLTFAPEAG 366

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDD---FRATMDLVD 355
           + R+   +N+  T  E  + I        D  I   F++G PGETD D      T+  + 
Sbjct: 367 TQRMRDVINKGLTNEELLRGIQTAVQQGWD-RIKLYFMIGLPGETDLDVIGIAETVRWLK 425

Query: 356 K---------IGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQ---- 402
           +         + +       ++P+  TP       V E ++ ++L  L+++ RE +    
Sbjct: 426 RECRPRGKRSLQFT-LTISNFTPKPHTPFQWHSVSVGEFIRKQKL--LREEFREIRGVKV 482

Query: 403 ------VSFNDACVGQ 412
                 +S  +  VG+
Sbjct: 483 NYTQVAISAMEDFVGR 498


>gi|15642368|ref|NP_232001.1| hypothetical protein VC2371 [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121588209|ref|ZP_01677953.1| conserved hypothetical protein [Vibrio cholerae 2740-80]
 gi|121727483|ref|ZP_01680601.1| conserved hypothetical protein [Vibrio cholerae V52]
 gi|147675264|ref|YP_001217874.1| hypothetical protein VC0395_A1950 [Vibrio cholerae O395]
 gi|153819126|ref|ZP_01971793.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457]
 gi|153822760|ref|ZP_01975427.1| conserved hypothetical protein [Vibrio cholerae B33]
 gi|227082495|ref|YP_002811046.1| hypothetical protein VCM66_2294 [Vibrio cholerae M66-2]
 gi|229507563|ref|ZP_04397068.1| hypothetical protein VCF_002792 [Vibrio cholerae BX 330286]
 gi|229512241|ref|ZP_04401720.1| hypothetical protein VCE_003653 [Vibrio cholerae B33]
 gi|229519377|ref|ZP_04408820.1| hypothetical protein VCC_003407 [Vibrio cholerae RC9]
 gi|229607069|ref|YP_002877717.1| hypothetical protein VCD_001978 [Vibrio cholerae MJ-1236]
 gi|254849493|ref|ZP_05238843.1| conserved hypothetical protein [Vibrio cholerae MO10]
 gi|298500267|ref|ZP_07010072.1| radical SAM protein [Vibrio cholerae MAK 757]
 gi|9656941|gb|AAF95514.1| conserved hypothetical protein [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121547551|gb|EAX57654.1| conserved hypothetical protein [Vibrio cholerae 2740-80]
 gi|121630151|gb|EAX62553.1| conserved hypothetical protein [Vibrio cholerae V52]
 gi|126510316|gb|EAZ72910.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457]
 gi|126519705|gb|EAZ76928.1| conserved hypothetical protein [Vibrio cholerae B33]
 gi|146317147|gb|ABQ21686.1| conserved hypothetical protein [Vibrio cholerae O395]
 gi|227010383|gb|ACP06595.1| conserved hypothetical protein [Vibrio cholerae M66-2]
 gi|227014266|gb|ACP10476.1| conserved hypothetical protein [Vibrio cholerae O395]
 gi|229344066|gb|EEO09041.1| hypothetical protein VCC_003407 [Vibrio cholerae RC9]
 gi|229352206|gb|EEO17147.1| hypothetical protein VCE_003653 [Vibrio cholerae B33]
 gi|229355068|gb|EEO19989.1| hypothetical protein VCF_002792 [Vibrio cholerae BX 330286]
 gi|229369724|gb|ACQ60147.1| hypothetical protein VCD_001978 [Vibrio cholerae MJ-1236]
 gi|254845198|gb|EET23612.1| conserved hypothetical protein [Vibrio cholerae MO10]
 gi|297540960|gb|EFH77014.1| radical SAM protein [Vibrio cholerae MAK 757]
          Length = 316

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/124 (25%), Positives = 50/124 (40%), Gaps = 12/124 (9%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +L L +Q+  D+ LK +NR H    Y +I  + R++   I + +  IVG PGE   +   
Sbjct: 145 WLELGLQTAHDQTLKRINRGHDFACYAEITAKARAL--GIKVCTHLIVGLPGEERTENLT 202

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDAC 409
           T+  V K+G             G+  +          KA R   L    ++Q VS     
Sbjct: 203 TLQQVLKVGTDGIKLHGLHIVEGSTMA----------KAWRAGRLTVLDQDQYVSIACEM 252

Query: 410 VGQI 413
           +   
Sbjct: 253 IRST 256


>gi|17548001|ref|NP_521403.1| coproporphyrinogen III oxidase [Ralstonia solanacearum GMI1000]
 gi|17430307|emb|CAD17072.1| probable oxygen-independent coproporphyrinogen III oxidase
           oxidoreductase protein [Ralstonia solanacearum GMI1000]
          Length = 510

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 37/193 (19%), Positives = 71/193 (36%), Gaps = 14/193 (7%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C   C +C        + +RS   +   AR++       I  L Q      G    G   
Sbjct: 107 CANLCYYCGCNKVVTKDHTRSARYIGALAREM-AMVARHIGPLRQATQLHWG----GGTP 161

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL-------MPYLHLPVQSG 298
           TF      + ++    R  +  +   ++S  L   H     L            L +Q  
Sbjct: 162 TF-LSHDEMRDVMAATREHFALTSDAEVSVELDPRHASDATLEVLAGLGFNRASLGIQDF 220

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
              + ++++R  +  + R+++D  R +  + +IS D I G P +    F AT+D V ++ 
Sbjct: 221 DADVQRAIHRVQSVEQTRRVVDSARRLGFE-SISFDLIYGLPHQHTATFNATLDRVLEMA 279

Query: 359 YAQAFSFKYSPRL 371
             +   + Y+   
Sbjct: 280 PDRLSVYSYAHLP 292


>gi|284051375|ref|ZP_06381585.1| Radical SAM domain protein [Arthrospira platensis str. Paraca]
          Length = 888

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 53/323 (16%), Positives = 101/323 (31%), Gaps = 30/323 (9%)

Query: 110 AQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGG 169
           A    E++L     V  V  PQ Y    +                 V       SI    
Sbjct: 193 AGLTREQLLLDLAQVPGVYVPQFYDMAADGSIHPNHPDVPATIIRRVATPMPAYSITMVP 252

Query: 170 YNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVD-EARKLIDNGVCEITLL 228
           +         + ++ GC + C FC                VV+  A+ +   G  E +LL
Sbjct: 253 FVETVHDRLAIEVRRGCTRGCRFCQPGMLTRPARDVEPEAVVEAIAKGMKATGYNEFSLL 312

Query: 229 GQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLM 288
                               ++   L      + L   +       + +    G      
Sbjct: 313 S-----LSCSDYLSLPAVGMEIKNRLR--DSNISLSLPSQRVDRFDENIANIIGGTRT-- 363

Query: 289 PYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDD-- 346
             L    ++G+ R+   +N+  T  E  + +        D  I   F++G PGETD D  
Sbjct: 364 SSLTFAPEAGTQRMRDVINKGLTNEELLRGVQTAYEQGWD-KIKLYFMIGLPGETDADVL 422

Query: 347 -FRATMDLV-------DKIGYA-QAFSFKYSPRLGTP------GSNMLEQVDENVKAE-- 389
               T+  +        +   +       ++P+  TP       +   ++  + +KAE  
Sbjct: 423 GIAETVRWLQSQCQGHRRRPLSINLTISNFTPKPHTPFQWHSVSTTEFQRKQQLLKAEFH 482

Query: 390 RLLCLQKKLREQQVSFNDACVGQ 412
           RL  ++    + ++S  +  +G+
Sbjct: 483 RLKGVKANFTDVRISAMEDFIGR 505


>gi|284009198|emb|CBA76266.1| oxygen-independent coproporphyrinogen III oxidase [Arsenophonus
           nasoniae]
          Length = 462

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 40/244 (16%), Positives = 86/244 (35%), Gaps = 14/244 (5%)

Query: 174 RGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVN 233
           R ++ ++ I   C K C FC           +  + ++   +++I             ++
Sbjct: 56  RPLSLYVHIPF-CHKLCYFCGCNKLVTRHKHKVDNYLLVLEKEIIKQAQLFTNRTVIQMH 114

Query: 234 AWRGKGLDGEKCTFSDLLYSLS-----EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLM 288
              G     +K   S L+  L       +   + +      PR++   +I          
Sbjct: 115 WGGGTPTYLDKSQLSQLMAMLKSHFNFAVDAEISIE---IDPREIELHIIDHLRCEG--F 169

Query: 289 PYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFR 348
             L + VQ  + ++   +NR+        ++ R R V  + + S D I G P +T + F 
Sbjct: 170 NRLSMGVQDFNKQVQHLVNRQQDEAFIFALVQRAREVGFN-STSIDLIYGLPKQTAETFA 228

Query: 349 ATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV-DENVKAERLLCLQKKLREQQVSFND 407
            T++ V  +   +   F Y+       +    +  D     ++L  LQ+ +     +   
Sbjct: 229 FTLERVLALSPDRLSVFNYAHMPHLFAAQRKIKTQDLPTAEQKLAILQQTIFTLTQNGYQ 288

Query: 408 ACVG 411
             +G
Sbjct: 289 -FIG 291


>gi|217974291|ref|YP_002359042.1| hypothetical protein Sbal223_3134 [Shewanella baltica OS223]
 gi|217499426|gb|ACK47619.1| conserved hypothetical protein [Shewanella baltica OS223]
          Length = 309

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 45/238 (18%), Positives = 77/238 (32%), Gaps = 34/238 (14%)

Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW--------RGKG 239
             CTFC V        S   + V+    + ++ G            A             
Sbjct: 43  GGCTFCNV-----ASFSHQTADVL-SITEQLEQGKSRYREAKPQAQADKFIAYFQAYTST 96

Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV--LMPYLHLPVQS 297
            D  +   +    ++    G +      + P  + D ++          +  +L L +Q+
Sbjct: 97  YDEYQVLMAKYDEAVK--DGEIVGLCVGTRPDCVPDNVLDLLASYQANGVDVWLELGLQT 154

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
             D  L+ +NR H    Y   + R R+    + + +  I+G P ET  D+ AT+  V + 
Sbjct: 155 AQDETLRKINRGHDFACYCDTVSRARAR--GLKVCTHLILGLPDETHSDYMATLAAVLQQ 212

Query: 358 GYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIE 415
           G          P     GS M        KA R   L        +      VG++I 
Sbjct: 213 GVDGLKLH---PLHVVKGSTMA-------KAWRSGRLPLL----SLEDYARSVGEMIR 256


>gi|253681549|ref|ZP_04862346.1| radical SAM domain protein [Clostridium botulinum D str. 1873]
 gi|253561261|gb|EES90713.1| radical SAM domain protein [Clostridium botulinum D str. 1873]
          Length = 364

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/210 (16%), Positives = 68/210 (32%), Gaps = 4/210 (1%)

Query: 170 YNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLG 229
              +  +       EGC   C FC      G       + V +   + +     E +++ 
Sbjct: 3   KETRHYIIPIFVPHEGCPHDCVFCNQNSITGSSSKVDGNFVKNTIEEYLKTINKENSIIE 62

Query: 230 QNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMP 289
            +        +D  K      +    +  G +   + ++ P  + D ++K   +    + 
Sbjct: 63  VSFFGGTFTAIDINKQNELLRVAKHYKDLGKIDYIHLSTRPDYIDDNILKNLKEYSADV- 121

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
            + L VQS  D +L    R HT  +  +    I+       +    ++G PG+  +    
Sbjct: 122 -IELGVQSLDDEVLLKSGRGHTVDDVVKASKLIKEY--GFVLGLQVMLGLPGDNFEKDIY 178

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
           T   V  +    A  +       TP   M 
Sbjct: 179 TAKKVIDLKPEIARIYPALVVKNTPMETMY 208


>gi|218245534|ref|YP_002370905.1| Radical SAM domain-containing protein [Cyanothece sp. PCC 8801]
 gi|218166012|gb|ACK64749.1| Radical SAM domain protein [Cyanothece sp. PCC 8801]
          Length = 856

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 47/256 (18%), Positives = 92/256 (35%), Gaps = 36/256 (14%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGK 238
           L ++ GC + C FC               Q+++   K I   G  E +LL  + + +   
Sbjct: 256 LEVRRGCTRGCRFCQPGMLTRPARDVEPEQIINTIEKGIRETGFNEFSLLSLSCSDYLSL 315

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
              G +        ++S       L   +       + +    G +      L    ++G
Sbjct: 316 PSVGIEIKNRLKNENIS-------LSLPSQRVDRFDENIANIIGGIRQ--SSLTFAPEAG 366

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDD---FRATMDLVD 355
           + R+   +N+  T  E  + I        D  I   F++G PGETD D      T+  + 
Sbjct: 367 TQRMRDVINKGLTNEELLRGIQTAVQQGWD-RIKLYFMIGLPGETDLDVIGIAETVRWLK 425

Query: 356 K---------IGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQ---- 402
           +         + +       ++P+  TP       V E ++ ++L  L+++ RE +    
Sbjct: 426 RECRPRGKRSLQFT-LTISNFTPKPHTPFQWHSVSVGEFIRKQKL--LREEFREIRGVKV 482

Query: 403 ------VSFNDACVGQ 412
                 +S  +  VG+
Sbjct: 483 NYTQVAISAMEDFVGR 498


>gi|241204532|ref|YP_002975628.1| lipoyl synthase [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240858422|gb|ACS56089.1| lipoic acid synthetase [Rhizobium leguminosarum bv. trifolii
           WSM1325]
          Length = 323

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 79/220 (35%), Gaps = 11/220 (5%)

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
           R +  ++ +    E     + G    +    F+ + E C + C FC V    G   +  +
Sbjct: 49  RAIVKEHKLVTVCEEAGCPNIGECWDKKHATFMIMGEICTRACAFCNV--ATGKPNALDM 106

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
           ++  + A+ + + G+  + +   +    R    DG    F  +++++     +  +   T
Sbjct: 107 AEPENVAKAVKEMGLSHVVITSVD----RDDLEDGGAEHFEKVIWAIRAASPMTTIEILT 162

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
                    L +       +  +    +++     L ++      +   +++ R++ + P
Sbjct: 163 PDFLKKPGALERVVAAKPDVFNH---NMETVPGNYL-TVRPGARYFHSVRLLQRVKELDP 218

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
            +   S  +VG  GE  ++    MD +           +Y
Sbjct: 219 TMFTKSGIMVGL-GEERNEVLQLMDDLRTADVDFLTIGQY 257


>gi|147677890|ref|YP_001212105.1| Fe-S oxidoreductase [Pelotomaculum thermopropionicum SI]
 gi|146273987|dbj|BAF59736.1| Fe-S oxidoreductase [Pelotomaculum thermopropionicum SI]
          Length = 289

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 42/210 (20%), Positives = 73/210 (34%), Gaps = 19/210 (9%)

Query: 179 FLTIQEGC-DKFCTFC-VVPYTRGIEISR-SLSQVVDEARKLIDNGVCEITLLGQNVNAW 235
            L I  GC +  CTFC      +    S   +   +  A++ +D  V  I L   N  A 
Sbjct: 18  ILQISVGCSNNTCTFCGAYKDKKFRVKSWLEIEADILIAKRYLDR-VKRIFLADGNAMAL 76

Query: 236 RGKGLDGEKCTFSDLLYSL-SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP 294
                  +       L  L  E   L R+         +     +     +  +  ++  
Sbjct: 77  -------DSSLLIKTLKMLYHEFPFLERVGIYAGAQDILRKQPEELKELKESGLGIVYFG 129

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGE--TDDDFRATMD 352
           ++SGSD+ILK + +  T  +  +    +      + +S   I G  G+  +++    T  
Sbjct: 130 LESGSDKILKMVRKGVTPAQMIEACKMVMEA--GLTLSVTVIAGLGGQDLSEEHAIETAS 187

Query: 353 LVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
            V  I      +       GTP   + EQV
Sbjct: 188 AVSAINPDYLSTLSLMVVEGTP---LYEQV 214


>gi|332703104|ref|ZP_08423192.1| Protein of unknown function DUF2344 [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332553253|gb|EGJ50297.1| Protein of unknown function DUF2344 [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 893

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 50/305 (16%), Positives = 107/305 (35%), Gaps = 48/305 (15%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLID-NGVCEITLLGQNVNAWRGK 238
           + I  GC + C FC           R L ++ +     +   G  EI+ L  +   +   
Sbjct: 252 VEIARGCTRGCRFCHAGMVYRPVRERGLDRLDEIIGTSLAGTGYEEISFLSLSTGDY--S 309

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
            LDG    F         +   V +   +     +S  L+     +      + L  ++G
Sbjct: 310 ALDG---LFEQSFERC--MSEQVSISLPSLRVGSISGRLMGLMSRIRR--TGVTLAPEAG 362

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA--ISSDFIVGFPGETDDDFRATMDLVDK 356
           S R+   +N+  +      ++D +R +  +    +   F++G P ET++D RA +DL  K
Sbjct: 363 SQRLRDVINKGVSEQ---DLMDHVRRLFENGWQQVKLYFMIGLPTETEEDIRAILDLCRK 419

Query: 357 IGY---------AQAFSFKYSPRLGTPGSNMLEQVDENV---KAERLLCLQKKLREQQVS 404
           +             A    + P+  TP      Q        K   L  + +  +  ++ 
Sbjct: 420 VEAQGRGTKRLQVTAAVSPFVPKPHTP-FQWERQASLEEIQGKIALLREIMRPYKRIKLR 478

Query: 405 FND----------ACVGQIIEVLIEKHGKEKGKLVGRSPWLQ-------SVVLNSKNHNI 447
           +++          +  G+ +  ++E+  ++       + W+           L  +    
Sbjct: 479 WHEPDMSLLEGVFSRAGRELAPVVERAYRKGALF---TSWVDHLDLDKWLETLEEEGLTA 535

Query: 448 GDIIK 452
           GD ++
Sbjct: 536 GDFLR 540


>gi|327480442|gb|AEA83752.1| coproporphyrinogen III oxidase [Pseudomonas stutzeri DSM 4166]
          Length = 460

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 36/227 (15%), Positives = 80/227 (35%), Gaps = 29/227 (12%)

Query: 160 FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC----VVPYTRGIEISRSLSQVVDEAR 215
           F+ L  +       R ++ ++ +   C   C +C    ++   RG             A+
Sbjct: 38  FDLLHALRSSRQASRPLSLYVHLPF-CANVCYYCGCNKIITKDRGR------------AQ 84

Query: 216 KLIDNGVCEITLLGQNVNAWR--GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPR-- 271
             ++    EI L+  ++   +   +   G           L  +   +R  +        
Sbjct: 85  PYLERLEKEIELISCHLGKDQLVEQLHFGGGTPTFLSHDELRRLMKHLRQHFNLQDDDHG 144

Query: 272 DMSDCLIKAHGDLDVL-------MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           D S  +     D   +          + + VQ     + +++NR  T  + R II+  R+
Sbjct: 145 DFSIEVAPREADWPTIGLLRELGFNRISIGVQDLDPDVQRAINRMQTLEQTRTIIEAART 204

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
           ++   +++ D I G P +T   F  T++ +  +   +   F Y+   
Sbjct: 205 LQYR-SLNIDLIYGLPLQTPARFAKTVEAIIDLQPDRLSLFNYAHLP 250


>gi|146310821|ref|YP_001175895.1| lipoyl synthase [Enterobacter sp. 638]
 gi|166990682|sp|A4W814|LIPA_ENT38 RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|145317697|gb|ABP59844.1| lipoic acid synthetase [Enterobacter sp. 638]
          Length = 321

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 42/258 (16%), Positives = 89/258 (34%), Gaps = 19/258 (7%)

Query: 118 LRRSPIVNVVVGPQTYYRLPELLERAR-------FGKRVVDTDYSVEDKFERLSIVDGGY 170
           +   P+ NVV   +   R PE ++           G +       +    E  S  +   
Sbjct: 19  MALIPVKNVVTEREALLRKPEWMKIKLPADSSRIQGIKAAMRKNGLHSVCEEASCPNLAE 78

Query: 171 NRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQ 230
               G   F+ +   C + C FC V    G  ++   ++ +  A+ + D  +  + +   
Sbjct: 79  CFNHGTATFMILGAICTRRCPFCDV--AHGRPVAPDANEPLKLAQTIADMALRYVVITSV 136

Query: 231 NVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAH-GDLDVLMP 289
           +    R    DG    F+D + ++ E    +++       R   D  ++        +  
Sbjct: 137 D----RDDLRDGGAQHFADCISAIREKSPSIKIETLVPDFRGRMDRALEILTATPPDVFN 192

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +    V     R+ + +          ++++R +   P I   S  +VG  GET+ +   
Sbjct: 193 HNLENV----PRVYRQVRPGADYNWSLKLLERFKEAHPHIPTKSGLMVGL-GETNAEIIE 247

Query: 350 TMDLVDKIGYAQAFSFKY 367
            M  + + G       +Y
Sbjct: 248 VMRDLRRHGVTMLTLGQY 265


>gi|320333391|ref|YP_004170102.1| Lipoyl synthase [Deinococcus maricopensis DSM 21211]
 gi|319754680|gb|ADV66437.1| Lipoyl synthase [Deinococcus maricopensis DSM 21211]
          Length = 331

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/227 (14%), Positives = 74/227 (32%), Gaps = 23/227 (10%)

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
           R V  ++ +    E     +      RG   F+ +   C + C FC V           +
Sbjct: 48  RKVVREHKLHTVCEEAMCPNIAECWSRGTATFMLMGHVCTRACRFCAVDTGNPR-GHLDV 106

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
           ++ +  A  +    +  + L   +    R    DG    F+  +  + ++    R+   T
Sbjct: 107 TEPMQVADSVQLMKLKYVVLTSVD----RDDLPDGGAYHFARTVAQIKKVSPETRVEALT 162

Query: 268 SHPRDMSDCL-------IKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
                 + C+       +  +      +  L  PV+          + R +  +   ++ 
Sbjct: 163 PDFSGNTHCVDLVLDAGVDVYAQNLETVRRLTHPVR----------DVRASYDQTLAVLA 212

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
             +  RPD+   +  ++G  GET ++    M      G       +Y
Sbjct: 213 YAKKARPDVYTKTSIMLGL-GETREEVIEAMHDCRAAGVDVITFGQY 258


>gi|315604665|ref|ZP_07879728.1| coproporphyrinogen dehydrogenase [Actinomyces sp. oral taxon 180
           str. F0310]
 gi|315313677|gb|EFU61731.1| coproporphyrinogen dehydrogenase [Actinomyces sp. oral taxon 180
           str. F0310]
          Length = 430

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 42/227 (18%), Positives = 78/227 (34%), Gaps = 29/227 (12%)

Query: 171 NRKRGVTAFLTIQEGCDKFCTFC-----VVPYTRGIEISRSLSQVVDEAR----KLIDNG 221
           +R+R ++ ++ +   C   C +C      V +  G ++      V+ EAR     + D G
Sbjct: 25  DRRRPLSLYVHVPF-CRVRCGYCDFNTYTVGFGPGAQVGDYAPSVLAEARLATRVMADAG 83

Query: 222 VCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMS------D 275
           +       Q V    G           ++L  L E  G+ +    T      S       
Sbjct: 84  MKARR--AQTVFFGGGTPTMLATAELIEILRGLDEAVGIAKDAEVTLEANPDSVTRSGLR 141

Query: 276 CLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDF 335
            L  A          +   +QS    +L++++R H       +++  +     ++ S D 
Sbjct: 142 ELAHA------GFTRVSFGMQSAVPSVLRTLDRTHAPNRVPLVVEWAKEA--GLSTSLDL 193

Query: 336 IVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           I G PGE   D+  ++            ++      GT    M  QV
Sbjct: 194 IYGTPGEGLTDWETSLRCALSYRPDHISAYALVVEEGT---KMGRQV 237


>gi|254302542|ref|ZP_04969900.1| glucosamine 6-phosphate N-acetyltransferase [Fusobacterium
           nucleatum subsp. polymorphum ATCC 10953]
 gi|148322734|gb|EDK87984.1| glucosamine 6-phosphate N-acetyltransferase [Fusobacterium
           nucleatum subsp. polymorphum ATCC 10953]
          Length = 348

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/172 (16%), Positives = 59/172 (34%), Gaps = 14/172 (8%)

Query: 174 RGVTAFLTIQE-GCDKFCTFCVVPYTRGIEISRSLSQVVDEA----RKLIDNGVCEITLL 228
           +     + I   GC   C FC      G E   SL  + +      + L  N + ++   
Sbjct: 2   KHYNIPVFISHFGCPNACVFCNQKKINGRETDVSLDDLKNIIDSYLKTLPKNSIKQVAFF 61

Query: 229 GQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLM 288
           G       G  ++ +K     + + +           T     D    ++         +
Sbjct: 62  GGTFT---GISMNLQKEYLEVVKHYIDNNDVEGVRISTRPECIDD--EILTQLKKYG--V 114

Query: 289 PYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFP 340
             + L +QS  D++L++  R +T    ++  D I++      +    ++G P
Sbjct: 115 KTIELGIQSLDDKVLRATGRNYTYDIVKKSCDLIKNY--GFELGIQLMIGLP 164


>gi|56421509|ref|YP_148827.1| lipoyl synthase [Geobacillus kaustophilus HTA426]
 gi|56381351|dbj|BAD77259.1| lipoic acid synthetase (lipoate synthase) [Geobacillus kaustophilus
           HTA426]
          Length = 311

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/214 (15%), Positives = 74/214 (34%), Gaps = 13/214 (6%)

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           ++V ++ +  +I +    R+     F+ +   C + C FC V      E+     +    
Sbjct: 50  HTVCEEAKCPNIHECWAVRR--TATFMILGSVCTRACRFCAVKTGLPTEL--DWQEPERV 105

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
           A  +    +  + +        R    DG    F++ + ++        +    S    +
Sbjct: 106 AESVRIMNLKHVVVTAV----ARDDLKDGGAAVFAETVRAIRRKNPFTTIEVLPSDMGGV 161

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
            + L         ++ +    V+  +      +  R T     + + R + ++PDI   S
Sbjct: 162 YENLKILMDARPDILNHNIETVRRLTP----RVRARATYERSLEFLRRAKELQPDIPTKS 217

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
             +VG  GET ++    MD +           +Y
Sbjct: 218 SIMVGL-GETKEEIIEAMDDLRANHVDILTIGQY 250


>gi|294637515|ref|ZP_06715801.1| lipoyl synthase [Edwardsiella tarda ATCC 23685]
 gi|291089347|gb|EFE21908.1| lipoyl synthase [Edwardsiella tarda ATCC 23685]
          Length = 275

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 32/183 (17%), Positives = 65/183 (35%), Gaps = 12/183 (6%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V    G  ++   ++    A+ + D G+  + +   +    R    DG   
Sbjct: 94  CTRRCPFCDV--AHGRPLTPDANEPEKLAQTIADMGLRYVVITSVD----RDDLRDGGAQ 147

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL-K 304
            F+D + ++      +R+       R   D  ++   D    +          +   L +
Sbjct: 148 HFADCIRAIRAKSPQIRIETLVPDFRGRMDRALEILSDNPPDV----FNHNLENIPRLYR 203

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
            +          +++ + +   PDI   S  +VG  GET+ +  A M  +   G      
Sbjct: 204 QVRPGANYEWSLRLLQQFKQQHPDIPTKSGLMVGL-GETNQEIIAVMRDLRAHGVTMLTL 262

Query: 365 FKY 367
            +Y
Sbjct: 263 GQY 265


>gi|226951010|ref|YP_002806101.1| radical SAM protein [Clostridium botulinum A2 str. Kyoto]
 gi|226841992|gb|ACO84658.1| radical SAM protein [Clostridium botulinum A2 str. Kyoto]
          Length = 310

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/199 (15%), Positives = 65/199 (32%), Gaps = 15/199 (7%)

Query: 188 KFCTFCVVPYT------RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD 241
             C +C    +      R  +I +    +    ++   +            N +    + 
Sbjct: 46  GGCIYCSERGSGDFAGDRNFKIHKQFEDIKKIMKEKWSSDKYIAYFQA-YTNTYAPVNIL 104

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
            EK   +     +  +    R         ++ + L         +  ++ L +Q+ +D 
Sbjct: 105 REKYEEAMSEEGVVALAIATRPDCLDQDVLNLIEEL------SKKIYIWVELGLQTVNDE 158

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
             K +NR +    + + +  +R    DI + S  I G PGET +D   T+  + K+    
Sbjct: 159 TAKIINRGYKLNVFEKAVKDLRERNIDIVVHS--IFGLPGETKEDMIGTVKYISKLDIQG 216

Query: 362 AFSFKYSPRLGTPGSNMLE 380
                      TP   + E
Sbjct: 217 VKFHLLHLLKDTPLVKLYE 235


>gi|209967082|ref|YP_002299997.1| coproporphyrinogen III oxidase [Rhodospirillum centenum SW]
 gi|209960548|gb|ACJ01185.1| oxygen-independent coproporphyrinogen-III oxidase, putative
           [Rhodospirillum centenum SW]
          Length = 498

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 55/247 (22%), Positives = 91/247 (36%), Gaps = 21/247 (8%)

Query: 140 LERARFGKRVVDT----DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC-- 193
           L  A  G+R V      D   ED+   L        R R   A++ +   C+  C FC  
Sbjct: 63  LATAFPGRRPVHPASAMDTVPEDEIVPLWQRLHATGRTRRAVAYVHVPF-CENHCLFCGF 121

Query: 194 -VVPY---TRGIEISRSLSQVVDEARKLIDNG--VCEITLLGQNVNAWRGKGLDGEKCTF 247
              P+        +   ++Q+   AR     G  +  + L G    A  G  +       
Sbjct: 122 YQNPWRAEAGAPYVDAVIAQMAAFARTPAHAGPPLQAVYLGGGTPTALSGPDI------- 174

Query: 248 SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307
           + L+ ++     L      T   R  S  L KA    D  +  +   VQS SD I + + 
Sbjct: 175 ARLVRAIRTHLPLAPDCEITLEGRIHSFGLEKARAAFDAGVTRMSFGVQSFSDTIRRPLG 234

Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           R+    +    ++ + ++    AI +D I G P +T +D  A + L   +G      +  
Sbjct: 235 RKAPRRQLIAELEGLVALDRG-AIVADLIYGLPDQTPEDVAADVRLCAALGLDGFDLYSL 293

Query: 368 SPRLGTP 374
           +   GTP
Sbjct: 294 NVIPGTP 300


>gi|152972675|ref|YP_001337821.1| coproporphyrinogen III oxidase [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|238892280|ref|YP_002917014.1| coproporphyrinogen III oxidase [Klebsiella pneumoniae NTUH-K2044]
 gi|262041650|ref|ZP_06014843.1| oxygen-independent coproporphyrinogen III oxidase [Klebsiella
           pneumoniae subsp. rhinoscleromatis ATCC 13884]
 gi|330004714|ref|ZP_08305013.1| coproporphyrinogen dehydrogenase [Klebsiella sp. MS 92-3]
 gi|150957524|gb|ABR79554.1| coproporphyrinogen III oxidase [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|238544596|dbj|BAH60947.1| coproporphyrinogen III oxidase [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
 gi|259041003|gb|EEW42081.1| oxygen-independent coproporphyrinogen III oxidase [Klebsiella
           pneumoniae subsp. rhinoscleromatis ATCC 13884]
 gi|328536539|gb|EGF62875.1| coproporphyrinogen dehydrogenase [Klebsiella sp. MS 92-3]
          Length = 457

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 40/255 (15%), Positives = 88/255 (34%), Gaps = 34/255 (13%)

Query: 173 KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS-------LSQVVDEARKLIDNGVCEI 225
           +R ++ ++ I   C K C FC        +  ++         +++  A       V ++
Sbjct: 50  QRPLSLYVHIPF-CHKLCYFCGCNKIVTRQQHKADQYLDVLEQEIIHRAPLFATRQVKQL 108

Query: 226 TLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLD 285
              G                        +S +  L+R  +  S   ++S  +     +LD
Sbjct: 109 HWGGGTPTY--------------LNKAQISRLMDLLRSHFHFSAEAEISIEVDPREIELD 154

Query: 286 VL-------MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS-DFIV 337
           VL          L + VQ  +  + + +NR         +++  R +      ++ D I 
Sbjct: 155 VLDHLRAEGFNRLSMGVQDFNKEVQRLVNREQDEAFIFDLLNHAREI--GFTSTNIDLIY 212

Query: 338 GFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQK 396
           G P +T + F  T+  V ++   +   F Y+       +   ++  D     ++L  LQ+
Sbjct: 213 GLPKQTPESFAFTLQKVAELNPDRLSVFNYAHLPTLFAAQRKIKDADLPSAEQKLEILQE 272

Query: 397 KLREQQVSFNDACVG 411
            +     +     +G
Sbjct: 273 TIGSLTTAGYQ-FIG 286


>gi|145590140|ref|YP_001156737.1| lipoyl synthase [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
 gi|145048546|gb|ABP35173.1| lipoic acid synthetase [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
          Length = 336

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 35/210 (16%), Positives = 67/210 (31%), Gaps = 12/210 (5%)

Query: 161 ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS--QVVDEARKLI 218
           E  S  + G    +G   F+ + + C + C FC V + R       L   +  + AR + 
Sbjct: 80  EEASCPNIGECFGKGTATFMIMGDKCTRRCPFCDVGHGRPD----PLDTKEPANLARTIA 135

Query: 219 DNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLI 278
              +  + +   +    R    DG    + D +     +    R+       R   D  +
Sbjct: 136 ALKLNYVVITSVD----RDDLRDGGAMHYVDCISQSRGLSPSTRIEVLVPDFRGRLDKAL 191

Query: 279 KAHGDL-DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIV 337
                     +P +         R+ K            +++   +   P+I   S  +V
Sbjct: 192 DIFSQHAPKGLPDVMNHNLETVPRLYKQARPGADYLHSLKLLKDFKERFPNIPTKSGLMV 251

Query: 338 GFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           G  GETD++    M  +           +Y
Sbjct: 252 GL-GETDEEILEVMKDMRDHNIDMLTIGQY 280


>gi|28211803|ref|NP_782747.1| coproporphyrinogen III oxidase [Clostridium tetani E88]
 gi|28204245|gb|AAO36684.1| oxygen-independent coproporphyrinogen III oxidase [Clostridium
           tetani E88]
          Length = 477

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 41/269 (15%), Positives = 77/269 (28%), Gaps = 23/269 (8%)

Query: 162 RLSIVDGGYNRKRGVTAFLTIQEG---CDKFCTFCVV---PYTRGIEISRSLSQVVDEAR 215
            + +             F++I  G   C   C +C     P  +     + + + +    
Sbjct: 136 CIDVARREETFVNKSDKFISIYIGMPFCPTRCLYCSFTSNPIGKNK---KLVEEYIKCLS 192

Query: 216 KLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSD 275
             I+     I      +      G         +  Y + +I                  
Sbjct: 193 FEIEEIKKYIDKKDLTIETVYFGGGTPTSVDNHEFEYIMEKIYNNFICNRNVKEFTVECG 252

Query: 276 CLIKAHGDLDVLMPYLH-----LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330
                + +    M         +  QS ++  LK + R HT  +  +  +  R +     
Sbjct: 253 RPDSINKEKFKTMKKYDTTRISINPQSMNNDTLKVIGRSHTVEDVIRSFNEARELGFY-N 311

Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV---DENVK 387
           I+ D IVG PGE       T   + K+          S + G+   + LE+V   D+N  
Sbjct: 312 INMDIIVGLPGEGLSHIENTYKKILKLKPDSLTVHGMSIKRGSTLYHRLEKVLNSDQNEL 371

Query: 388 AERLLCLQKKLREQQVS-----FNDACVG 411
            E         +E  +           +G
Sbjct: 372 NEIFERTSDLAKELNMKPYYMYRQKNMLG 400


>gi|220932120|ref|YP_002509028.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Halothermothrix orenii H 168]
 gi|219993430|gb|ACL70033.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Halothermothrix orenii H 168]
          Length = 385

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 39/251 (15%), Positives = 92/251 (36%), Gaps = 29/251 (11%)

Query: 170 YNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLG 229
           Y+R  G+         C + C++C            S+    + A K +++ + EI +  
Sbjct: 7   YDRPFGLYIHFPF---CLRKCSYCDF---------YSIKYTQEFANKYVESLLKEIKIYS 54

Query: 230 QNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDC------LIKAHG 282
           + +   + K +  G           L  I   +   ++ S   +++         ++   
Sbjct: 55  KKIPTKKIKTIYLGGGTPGLFTYNQLYRIFDFIFNNFSVSEEGEITLEANPGSLTLEKIK 114

Query: 283 DLDVL-MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPG 341
               L +  L L VQS  +  LK + R H++ + R+++  I  V  +   ++D I   PG
Sbjct: 115 YFKKLGINRLSLGVQSFVEDELKLLGRFHSSKKAREVLLLINRVFDN--YNTDLIFAIPG 172

Query: 342 ETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQ 401
           ++ D++  ++  + ++       +      GT            VK   +  +  ++  +
Sbjct: 173 QSMDNWEYSLKQILELKPPHLSLYNLQLEKGTLLYK-------KVKKGEIKPVSDEVDAR 225

Query: 402 QVSFNDACVGQ 412
                   +G+
Sbjct: 226 MYLKAKKQLGK 236


>gi|282866900|ref|ZP_06275933.1| Radical SAM domain protein [Streptomyces sp. ACTE]
 gi|282558250|gb|EFB63819.1| Radical SAM domain protein [Streptomyces sp. ACTE]
          Length = 643

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 72/419 (17%), Positives = 125/419 (29%), Gaps = 74/419 (17%)

Query: 52  GYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVV----VAG 107
           G+   N    AD I    C +     + V      +R  K      G + ++       G
Sbjct: 150 GHAAFNPEPIADFI---DCAVIGDGEQAVLEITEIVRAWKAEGRPGGREEVLFRLARTGG 206

Query: 108 CVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVD 167
                  +        +  VV  ++                V+D D     K   + + +
Sbjct: 207 VYVPGFYDVEYLPDGRIGRVVPNRSGVPWR------VSKHTVMDLDEWPYPKQPLVPLAE 260

Query: 168 GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEIT 226
             + R       + I  GC + C FC           RS++ + +   K +   G  E+ 
Sbjct: 261 TVHERMS-----VEIFRGCTRGCRFCQAGMITRPVRERSITGIGEMVEKGLKATGFEEVG 315

Query: 227 LLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV 286
           LL     +       GE        Y+  +I     L   ++     +  L         
Sbjct: 316 LLS---LSSADHTEIGEIAKGLADRYTEDKIG----LSLPSTRVDAFNVDLANELTRNGR 368

Query: 287 LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR-----IRSVRPDIAISSDFIVGFPG 341
               L    + GS+R+ K +N+  +  +  + +        R V+        F+ G P 
Sbjct: 369 -RSGLTFAPEGGSERMRKVINKMVSEEDLIRTVATAYGNGWRQVK------LYFMCGLPT 421

Query: 342 ETDDDFRATMDLV-------------DKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           ETD+D     D+              + I         + P+  TP      Q+      
Sbjct: 422 ETDEDVLQIGDMAVNVIAKGREVSGQNDIRCT-VSIGGFVPKPHTP-FQWAPQLSAEDTD 479

Query: 389 ERLLCLQKKLR---------------------EQQVSFNDACVGQIIEVLIEKHGKEKG 426
            RL  L+ K+R                     E  +S  D  VG +I  + E  G+  G
Sbjct: 480 ARLKKLRDKIRDDKKYGRSIGFRYHDGKPGIVEGLLSRGDRRVGSVIRAVYESGGRFDG 538


>gi|557233|emb|CAA57578.1| oxygen independent coprophorphyrinogen III oxidase [Escherichia
           coli K-12]
          Length = 457

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 44/269 (16%), Positives = 91/269 (33%), Gaps = 30/269 (11%)

Query: 157 EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS-------LSQ 209
           ED  E+  +       +R ++ ++ I   C K C FC        +  ++         +
Sbjct: 34  EDFGEQAFLQAVARYPERPLSLYVHIPF-CHKLCYFCGCNKIVTRQQHKADQYLDALEQE 92

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE-----IKGLVRLR 264
           +V  A       V ++   G       G      K   S L+  L E         + + 
Sbjct: 93  IVHRAPLFAGRHVSQLHWGG-------GTPTYLNKAQISRLMKLLRENFQFNADAEISIE 145

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
                PR++   ++            L + VQ  +  + + +NR         +++  R 
Sbjct: 146 V---DPREIELDVLDHLRAEG--FNRLSMGVQDFNKEVQRLVNREQDEEFIFALLNHARE 200

Query: 325 VRPDIAISS-DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQV 382
           +      ++ D I G P +T + F  T+  V ++   +   F Y+       +   ++  
Sbjct: 201 I--GFTSTNIDLIYGLPKQTPESFAFTLKRVAEVNPDRLSVFNYAHLPTIFAAQRKIKDA 258

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVG 411
           D     ++L  LQ+ +     S     +G
Sbjct: 259 DLPSPQQKLDILQETIAFLTQSGYQ-FIG 286


>gi|315174393|gb|EFU18410.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Enterococcus faecalis TX1346]
          Length = 382

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 49/254 (19%), Positives = 98/254 (38%), Gaps = 28/254 (11%)

Query: 177 TAFLTIQEGCDKFCTFCVV--PYTRGIEISRSLSQVVDEARKLI----DNGVCEITLLGQ 230
           +A++ I   C+  C +C     +  G  +   +  ++ E +       +  +  I + G 
Sbjct: 5   SAYIHIPF-CEHICYYCDFNKVFLEGQPVDEYIQSLLKEIQLTQALYPEQEMKTIYIGGG 63

Query: 231 NVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT-SHPRDMSDCLIKAHGDLDVLMP 289
              +   K LD        +   L       R  +T  ++P D++   ++   +    + 
Sbjct: 64  TPTSLSAKQLD---VLLKGVREQL---TFDDRNEFTVEANPGDLTQEKLQVMKNYG--VN 115

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI-RSVRPDIAISSDFIVGFPGETDDDFR 348
            L + VQ+  DR+LK + R+HTA +  + +  + +    +++I  D I   PG+T + FR
Sbjct: 116 RLSMGVQTFDDRLLKKIGRKHTAADVYETMKFLEKENFTNVSI--DLIYALPGQTLESFR 173

Query: 349 ATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE----QVDENVKA-----ERLLCLQKKLR 399
            T+     +       +       T   N +     Q+ E         E +  ++KK R
Sbjct: 174 DTLTRALALDLPHYSLYSLILENKTMFMNWVRQGRLQLPEEEIEAQMFDETIEAMEKKGR 233

Query: 400 EQQVSFNDACVGQI 413
            Q    N A  G+ 
Sbjct: 234 HQYEVSNFALTGKE 247


>gi|262274947|ref|ZP_06052758.1| hypothetical protein VHA_001930 [Grimontia hollisae CIP 101886]
 gi|262221510|gb|EEY72824.1| hypothetical protein VHA_001930 [Grimontia hollisae CIP 101886]
          Length = 309

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 2/88 (2%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +L L +Q+ +D+ L+ +NR H    Y  I  + R++   + + +  IVG PG+T  D   
Sbjct: 142 WLELGLQTANDKTLQRINRGHDFACYDAITRKARAL--GLNVCTHLIVGLPGDTKADHIT 199

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
           T++ V + G             G+  + 
Sbjct: 200 TIERVIETGTDGIKLHPLHIVEGSVMAK 227


>gi|158522427|ref|YP_001530297.1| radical SAM domain-containing protein [Desulfococcus oleovorans
           Hxd3]
 gi|158511253|gb|ABW68220.1| Radical SAM domain protein [Desulfococcus oleovorans Hxd3]
          Length = 469

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 47/250 (18%), Positives = 78/250 (31%), Gaps = 25/250 (10%)

Query: 139 LLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCV--VP 196
            +E      R     + +E        +D      RGV+  LT+  GC   CTFC   V 
Sbjct: 164 FIEEIDALPRPAFDLFDMERYIRIFIQMDSHDPALRGVS--LTVSRGCPFNCTFCQPTVH 221

Query: 197 YTRGI-EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
            T G     RS   VV +   L      E   L  ++                D +    
Sbjct: 222 RTLGRKVRIRSPQSVVADLAYLKGAYRIECFYLSDDLLTV-----------LPDWIREFC 270

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL-MPYLHLPVQSGSDRILKSMNRRHTAYE 314
            +    RL         +          +    +  L + ++S +D   +  N  +    
Sbjct: 271 ALLESRRLDLPWGCNTRVDTIDADMMARMKRAGLVKLKVGIESITD---RIRNGLYNKQI 327

Query: 315 YR-QIIDRIRSVRP-DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
            R QI D + +     I ++   +VG P ET  +   T+         +      +P  G
Sbjct: 328 TRLQITDTLAAAEKLGIQVTGFIMVGAPTETAAEVWDTIRFAATSSLDEMVLSVTTPFPG 387

Query: 373 TPGSNMLEQV 382
              S + + V
Sbjct: 388 ---SALHDHV 394


>gi|260496870|ref|ZP_05815990.1| glucosamine 6-phosphate N-acetyltransferase [Fusobacterium sp.
           3_1_33]
 gi|260196612|gb|EEW94139.1| glucosamine 6-phosphate N-acetyltransferase [Fusobacterium sp.
           3_1_33]
          Length = 348

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/213 (15%), Positives = 68/213 (31%), Gaps = 14/213 (6%)

Query: 174 RGVTAFLTIQE-GCDKFCTFCVVPYTRGIEISRSLSQVVDEA----RKLIDNGVCEITLL 228
           +     + I   GC   C FC      G E   SL  + +      + L  N + ++   
Sbjct: 2   KHYNIPVFISHFGCPNACVFCNQKKINGRETDVSLDDLKNIIDSYLKTLPKNSIKQVAFF 61

Query: 229 GQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLM 288
           G       G  ++ +K     +   +           T     D    ++         +
Sbjct: 62  GGTFT---GISMNLQKEYLEVVKKYIDNNDVEGVRISTRPECIDD--EILTQLKKYG--V 114

Query: 289 PYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFR 348
             + L +QS  D++LK+  R +T    ++  D I+S      +    ++G P        
Sbjct: 115 KTIELGIQSLDDKVLKATGRNYTYNIVKKSCDLIKSY--GFELGIQLMIGLPKSDFKSDL 172

Query: 349 ATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
            +     ++    A  +      GT    M ++
Sbjct: 173 QSAIKSLELNPDIARIYPTLVIKGTELELMYKK 205


>gi|323345211|ref|ZP_08085434.1| coproporphyrinogen dehydrogenase [Prevotella oralis ATCC 33269]
 gi|323093325|gb|EFZ35903.1| coproporphyrinogen dehydrogenase [Prevotella oralis ATCC 33269]
          Length = 371

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 45/237 (18%), Positives = 81/237 (34%), Gaps = 33/237 (13%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEK 244
           C+  C +C          S       +   + +     E+ L    +   R + +  G  
Sbjct: 11  CESRCIYC---GFYSTTQS-------EFIDRYVRAVCKEMELRKDYLPDRRIRTIYFGGG 60

Query: 245 CTFSDLLYSLSEIKGLVRLRYTT---------SHPRDMSDCLIKAHGDLDVLMPYLHLPV 295
                    LS I   +   Y T          +P D++     A   L   +  + L  
Sbjct: 61  TPSLLSHRHLSTIFHNINKVYDTGCLQEVTLECNPDDVTADFASALRSLP--VNRVSLGA 118

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
           Q+ SD  L+ +NRRHT+ E    +  +R    +  IS D + GF G+T  ++   +D   
Sbjct: 119 QTFSDDRLRFLNRRHTSLEIVSAVSDLRRAGIN-NISIDLMFGFSGQTLGEWHTDIDRTL 177

Query: 356 KIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQ 412
            +      ++      GT    ML           L  +Q+   E+  S  +  + +
Sbjct: 178 ALEVEHISAYSLMYEEGTRLFKMLS----------LGKVQETDEEKSRSMYEILIDK 224


>gi|299770289|ref|YP_003732315.1| lipoyl synthase [Acinetobacter sp. DR1]
 gi|298700377|gb|ADI90942.1| lipoyl synthase [Acinetobacter sp. DR1]
          Length = 328

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/207 (15%), Positives = 66/207 (31%), Gaps = 10/207 (4%)

Query: 161 ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN 220
           E  +  +       G   F+ + + C + C FC V    G        +    A  + + 
Sbjct: 66  EEAACPNLPECFGGGTATFMIMGDICTRRCPFCDV--AHGRPKPLDEDEPKHLAETVANL 123

Query: 221 GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKA 280
            +  + +   +    R    DG    F   +  + +      +        D    L  A
Sbjct: 124 NLKYVVITSVD----RDDLHDGGAAHFVKCIEEIRKRCPETLIEILVP---DFRGRLETA 176

Query: 281 HGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFP 340
              L +  P +         R+ K+M          +++ R ++  PDI   S  +VG  
Sbjct: 177 LSTLSLSPPDVFNHNIETVPRLYKAMRPGSDYQHSLELLKRFKAYCPDIKTKSGLMVGL- 235

Query: 341 GETDDDFRATMDLVDKIGYAQAFSFKY 367
           GE + +  A ++ +           +Y
Sbjct: 236 GEIEAEVLALLNDLKDYQVDLITIGQY 262


>gi|224032247|gb|ACN35199.1| unknown [Zea mays]
          Length = 137

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 2/68 (2%)

Query: 165 IVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV--VDEARKLIDNGV 222
            V+    RK      L I  GC   CT+C   + RG   S ++      +   +L+  GV
Sbjct: 70  TVNTCQVRKNKFIEILPINVGCLGACTYCKTKHARGHLGSYTIDSFGSCENCCRLVAEGV 129

Query: 223 CEITLLGQ 230
            EI L  Q
Sbjct: 130 REIWLSSQ 137


>gi|297199657|ref|ZP_06917054.1| radical SAM domain-containing protein [Streptomyces sviceus ATCC
           29083]
 gi|197713973|gb|EDY58007.1| radical SAM domain-containing protein [Streptomyces sviceus ATCC
           29083]
          Length = 656

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 58/319 (18%), Positives = 101/319 (31%), Gaps = 59/319 (18%)

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
             V+D D     K   + + +  + R       + I  GC + C FC           RS
Sbjct: 243 HTVMDLDEWPYPKQPLVPLAETVHERMS-----VEIFRGCTRGCRFCQAGMITRPVRERS 297

Query: 207 LSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           ++ + D   K +   G  E+ LL     +       G+        Y   +I     L  
Sbjct: 298 ITGIGDMVEKGLKATGFEEVGLLS---LSSADHSEIGDIAKGLADRYEEDKIG----LSL 350

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR---- 321
            ++     +  L             L    + GS+R+ K +N+  +  +  + +      
Sbjct: 351 PSTRVDAFNVDLANELTRNGR-RSGLTFAPEGGSERMRKVINKMVSEEDLIRTVSTAYGN 409

Query: 322 -IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI---------GYAQAFSF---KYS 368
             R V+        F+ G P ETD+D     D+  K+               +     + 
Sbjct: 410 GWRQVK------LYFMCGLPTETDEDVLQIADMATKVIAEGRKVSGQNDIRCTVSIGGFV 463

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLR---------------------EQQVSFND 407
           P+  TP      Q+       RL  L+ K+R                     E  +S  D
Sbjct: 464 PKPHTP-FQWAPQLSAEETDARLAKLRDKIRGDKKYGRSIGFRYHDGKPGIVEGLLSRGD 522

Query: 408 ACVGQIIEVLIEKHGKEKG 426
             +G +I  + E  G+  G
Sbjct: 523 RRIGAVIRAVYEDGGRFDG 541


>gi|253996086|ref|YP_003048150.1| coproporphyrinogen III oxidase [Methylotenera mobilis JLW8]
 gi|253982765|gb|ACT47623.1| oxygen-independent coproporphyrinogen III oxidase [Methylotenera
           mobilis JLW8]
          Length = 482

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 74/193 (38%), Gaps = 14/193 (7%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C+  C FC           RS    +    + ID  V  +   GQ ++     G  G   
Sbjct: 86  CESLCFFCACNKIVTKHHERSAEY-LRYLSREIDLHVEHLG-AGQTISQLHLGG--GSPT 141

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPV-------QSG 298
            FSD    LSE+  ++R  +  +   + S  +     +   L     L         Q  
Sbjct: 142 FFSD--EELSELMAMIRRSFVLAPNGEYSIEVDPRTVNEQRLAHLASLGFNRLSFGVQDF 199

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
              + K+++R   A +   +++  R ++ D ++++D I G P ++ + F  T+  + ++ 
Sbjct: 200 DPEVQKAVHRIQPAEQVFSLVEAARRLKFD-SVNADLIYGLPKQSPESFSKTLSQIVELR 258

Query: 359 YAQAFSFKYSPRL 371
             +   + Y+   
Sbjct: 259 PERIALYAYAHLP 271


>gi|237756419|ref|ZP_04584960.1| lipoyl synthase [Sulfurihydrogenibium yellowstonense SS-5]
 gi|237691417|gb|EEP60484.1| lipoyl synthase [Sulfurihydrogenibium yellowstonense SS-5]
          Length = 280

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/207 (15%), Positives = 74/207 (35%), Gaps = 11/207 (5%)

Query: 161 ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN 220
           E  +  + G    R    F+ + + C + C +C V +  G   +    +  + A  +   
Sbjct: 30  EEANCPNIGDCFSRKTATFMIMGDICTRNCPYCNVSH--GKPQALDPQEPENVANAVKTL 87

Query: 221 GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKA 280
           G+  + +   +    R    DG    F+ ++  + EI   + +       +   + L   
Sbjct: 88  GLKHVVITSVD----RDDLPDGGASHFAKVIKKVREINPGIIIEVLIPDFKGSIESLKTV 143

Query: 281 HGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFP 340
             +   ++ +    V+     + K +  +       +I+  I+ + P     S F+VG  
Sbjct: 144 LDENPEVVNHNIETVK----ELYKIVRPQGNYERSLKILKSIKEISPKTISKSGFMVGL- 198

Query: 341 GETDDDFRATMDLVDKIGYAQAFSFKY 367
           GET +     M+ + K         +Y
Sbjct: 199 GETKEQIINLMEDLYKNNVEILTIGQY 225


>gi|260881736|ref|ZP_05405123.2| radical SAM domain protein [Mitsuokella multacida DSM 20544]
 gi|260848288|gb|EEX68295.1| radical SAM domain protein [Mitsuokella multacida DSM 20544]
          Length = 574

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 40/236 (16%), Positives = 85/236 (36%), Gaps = 30/236 (12%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
           +    GC + C FC+  Y      +RSLS + +E ++ +                  G  
Sbjct: 252 IETARGCGRHCRFCMAGYCFRKPRNRSLSVINEEVQEALKYRKRI---------GLMGAA 302

Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
           +       +     L E    + +   +     ++  L+ +  +    +  L +  ++GS
Sbjct: 303 ISDYPEIDALCKDILGE---GLSMSVASFRADSVTKELVDSLAESG--LKTLTMAPEAGS 357

Query: 300 DRILKSMNRRHTAYEYRQIIDR-IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           DR+   +N+    +     +D  + +   +  +    +VG P E ++D  A +DL +++ 
Sbjct: 358 DRMRAVINKGIEEHHLFHSMDLGLSAGIRNFRLY--IMVGLPFEEEEDIDAIIDLAERLK 415

Query: 359 YAQA-----------FSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQV 403
                              + P+  TP        D     +RL  L+K LR ++ 
Sbjct: 416 -DYMEARGSKGTLTLSVNPFIPKPFTP-FQWEPMADRKTVEKRLKRLEKTLRRRKH 469


>gi|167589702|ref|ZP_02382090.1| Radical SAM domain protein [Burkholderia ubonensis Bu]
          Length = 1383

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 38/203 (18%), Positives = 66/203 (32%), Gaps = 27/203 (13%)

Query: 174  RGVTAFLTIQEGCDKFCTFCVVPY-TRGIEISRSLSQVVDEARKLIDNGVC-EITLLGQN 231
            R   A + +  GCD  C+FC   +     E  R +  V+ E R L        I  +  N
Sbjct: 1036 RVHEAHIVMSTGCDWNCSFCTERFNLSKGERRRDVDSVLHEVRLLAKMHPNLRIQFIDDN 1095

Query: 232  VNAWRGKGLDGEK--------------CTFSDLLYSLS---EIKGLVRLR-YTTSHPRDM 273
            +       ++  +                   +   LS     +G+ RL  +     +  
Sbjct: 1096 LFPQIASPVNSNRVRIEEGVVWAESFLTGLKQIRDELSGSLTWRGIFRLEDFAAYEAQGE 1155

Query: 274  SDCLIKAHGDLDVLMPYLHLPVQSGS---DRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330
                ++   +       L   V+SG+      +K+  R  T      +  R+R     I 
Sbjct: 1156 RGGFVRVLSEAG--CNMLAFGVESGNADKRYSIKAGGREFTNGVIADLFRRLREA--GIF 1211

Query: 331  ISSDFIVGFPGETDDDFRATMDL 353
              + FI+G P ET      T+  
Sbjct: 1212 TKAYFILGGPKETALSTEETISF 1234


>gi|156382291|ref|XP_001632487.1| predicted protein [Nematostella vectensis]
 gi|156219544|gb|EDO40424.1| predicted protein [Nematostella vectensis]
          Length = 348

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/183 (18%), Positives = 71/183 (38%), Gaps = 9/183 (4%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V  T         ++ ++ A  +    +  I +   +    R    DG   
Sbjct: 108 CTRGCRFCSVK-TNKAPPPPDPNEPINTAEAISRWNLDYIVITSVD----RDDLPDGGAG 162

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
            F++ +  + +    + +   T   R  +   I+   +  + + Y H  V++     L  
Sbjct: 163 HFAETVRQIKKRNPKMLVECLTPDFRG-NREHIRTVAESGLDV-YAH-NVETVKSLQLLV 219

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
            + R    +   ++  ++ VRP++   +  ++G  GETDD+   TM  +  IG       
Sbjct: 220 RDPRANYKQSLDVLRYVKEVRPEMVTKTSIMLGV-GETDDEVLQTMKDLRSIGVDCLTLG 278

Query: 366 KYS 368
           +Y 
Sbjct: 279 QYM 281


>gi|124027622|ref|YP_001012942.1| Fe-S oxidoreductase [Hyperthermus butylicus DSM 5456]
 gi|123978316|gb|ABM80597.1| Fe-S oxidoreductase [Hyperthermus butylicus DSM 5456]
          Length = 519

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 40/281 (14%), Positives = 91/281 (32%), Gaps = 36/281 (12%)

Query: 168 GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLID-NGVCEIT 226
            G     G    +    GC   C FC+  +       RSL ++++   + ++ NGV  + 
Sbjct: 194 PGSGEPWGEAYMVEASRGCPYMCRFCMEAHFLMPLRYRSLGRLLELIERGVEANGVRRV- 252

Query: 227 LLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV 286
                  A+              L + + E               +    L+   G    
Sbjct: 253 -------AFYALSFFDHPAADRLLEHVIGEGLEASIGSLRADTLNEDRVELLARAGQ--- 302

Query: 287 LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDD 346
               + +  ++ S R+ + + +        +I     + R  + +   F++G PGETD D
Sbjct: 303 --RVVTVAPETLSPRLCRGIGKCIGYDRVEEIAGWAWARRMHVKLY--FMLGLPGETDRD 358

Query: 347 FRATMDLVDKI--------GYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKL 398
                + + K+           +       P+  TP       +D      R+  L++  
Sbjct: 359 VEEYAEALKKLSRRAPPVREAIRVTVNPMVPKPHTP-MQFHRLIDRATYERRVRILRRAQ 417

Query: 399 REQ--------QVSFNDACV---GQIIEVLIEKHGKEKGKL 428
            +         + ++    +    + +  L+++  +  G+L
Sbjct: 418 SKVLTVEPLSYRYAYAQTVIARGDETVARLVDEWARLGGRL 458


>gi|323485386|ref|ZP_08090734.1| radical SAM domain-containing protein [Clostridium symbiosum
           WAL-14163]
 gi|323401249|gb|EGA93599.1| radical SAM domain-containing protein [Clostridium symbiosum
           WAL-14163]
          Length = 610

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 62/352 (17%), Positives = 110/352 (31%), Gaps = 56/352 (15%)

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVV--------------- 128
           +  ++ L     K    L + + G      GEE+LR  P V  V+               
Sbjct: 80  ILYVKELVRELKKVMPQLTIWLGGPEVSYNGEEMLRELPEVTGVMAGEGEETFFRLVESC 139

Query: 129 ----------GPQTYYRLPELLERARFG----KRVVDTDYSVEDKFERLSIVDGGYNRKR 174
                     G +  +   E L + R G    K               LS +   Y    
Sbjct: 140 GMSFMESKEAGKRWNHSRLEELLKDRPGFIFRKSDGTISAGAPAPLMELSRIPFSYGSLE 199

Query: 175 GVTA---FLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQN 231
           G+     +     GC   C++C+          R L  V  E    ++  V ++  + + 
Sbjct: 200 GLAHRIIYYESSRGCPFSCSYCL-SSIDKTVRFRDLDMVKKELSFFLEKRVPQVKFVDRT 258

Query: 232 VNAWRGKGLDGEKCTFSD---LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLM 288
            N  +   ++  K        +     EI   +         + M   LI          
Sbjct: 259 FNCRKSHAMEIWKFILEHDNGVTNFHFEISADLLDEEELVLLKQMRPGLI---------- 308

Query: 289 PYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFR 348
             L + VQ+ +   ++ + RR    +  + +  + S R +I    D I G P E  + FR
Sbjct: 309 -QLEIGVQTTNPEAIREIRRRMDLEKLERNVHAVNSFR-NIHQHLDLIAGLPYEGYESFR 366

Query: 349 ATMDLV-------DKIGYAQAFSFKYSPRL-GTPGSNMLEQVDENVKAERLL 392
            + + V        ++G+ +     Y   + G  G     Q    V + R L
Sbjct: 367 KSFNDVYRMEPEQLQLGFLKVLKGSYMEEMAGEYGLLYKSQPPYEVLSTRWL 418


>gi|319789101|ref|YP_004150734.1| hypothetical protein Theam_0119 [Thermovibrio ammonificans HB-1]
 gi|317113603|gb|ADU96093.1| conserved hypothetical protein [Thermovibrio ammonificans HB-1]
          Length = 305

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 74/222 (33%), Gaps = 9/222 (4%)

Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTF 247
             C +C        E  R    V ++  + I+            V         G     
Sbjct: 40  GGCIYCFSGSDYDPEKRR--KSVREQIAQGIERVRRRYKAEKFLVYFQAYTNTYGPLEVL 97

Query: 248 SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307
             +  ++ E   +V L   T         L   H      + ++ L ++S   R L+ MN
Sbjct: 98  RSVYDTIREFPEVVGLIVGTRPDCVPDPVLELLHSYTSDYLVWVELGLESAHYRSLRWMN 157

Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           R H   ++   + RI+  +  + +    I+G P E  +D   T D +  +          
Sbjct: 158 RGHGVSDFVDAVLRIKRFKA-LNLCVHVILGLPTEDREDMLETADFLAALKVDGVKIHPL 216

Query: 368 SPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDAC 409
               GT     LE++    +  RLL L + + E  V F +  
Sbjct: 217 HVIRGTE----LERIYLEERF-RLLELDEYV-ELAVDFLERL 252


>gi|307104111|gb|EFN52366.1| hypothetical protein CHLNCDRAFT_138795 [Chlorella variabilis]
          Length = 472

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/203 (14%), Positives = 66/203 (32%), Gaps = 12/203 (5%)

Query: 186 CDKFCTFCVVP-YTRGIEISRSL---SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD 241
           C + C++C  P    G +++ +      +      ++        L  + + +    G  
Sbjct: 37  CKRKCSYCDFPVIAVGKDLAGTPHVQDNMQRYVEMVVQEIEASQRLNSEPLQSVFFGGGT 96

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY----LHLPVQS 297
               +   L   L+ +     L        +       A   L   M      + + VQS
Sbjct: 97  PSLISLPLLEQLLAALDQRFGLAAGAEVSIEADPGTFDA-ARLRSYMGMGVTRVSVGVQS 155

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSV-RPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
             D +L    R H A +  + I+ + +   P  ++  D + G P  T + ++ +++    
Sbjct: 156 FQDELLALCGRAHDAADVYRAIEAVHAAGVPSWSL--DLMSGLPQLTQELWQRSLEQALD 213

Query: 357 IGYAQAFSFKYSPRLGTPGSNML 379
                  ++       TP +   
Sbjct: 214 AAPHHISTYDLQVEEHTPFAKRY 236


>gi|300867339|ref|ZP_07111996.1| Radical SAM domain protein [Oscillatoria sp. PCC 6506]
 gi|300334645|emb|CBN57162.1| Radical SAM domain protein [Oscillatoria sp. PCC 6506]
          Length = 471

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 53/345 (15%), Positives = 111/345 (32%), Gaps = 40/345 (11%)

Query: 48  FFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAG 107
              +  E +N  D+ DL+V+                    R  + +         + + G
Sbjct: 46  LQDEHVEPLNLDDEPDLVVI------------QVYITSAYRAYELADYYRQKGAYIALGG 93

Query: 108 CVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVD 167
               +  EE    +    + +GP      P+ L+    GK                 I  
Sbjct: 94  LHVTSLPEEAAAHAD--TIFLGPGK-DTWPQFLKDWHLGKPEKVYASRNRTLIGVPPIRR 150

Query: 168 GGYNRKRGVTA-FLTIQEGCDKFCTFCVVPYTRGIEISR---SLSQVVDEARKLIDNGVC 223
               R+  +    + +  GC   C FC          S    ++   + E  +L      
Sbjct: 151 DLIKRQLYLVPNSIVVSRGCPHHCDFCYKESFFKGGKSFYTQTVDHALAEIERLPG---K 207

Query: 224 EITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGD 283
            +  L  ++         G+    S L   L  + G V     T H   +   L++    
Sbjct: 208 HLFFLDDHLF--------GDVRFASALFDGLKGM-GRVWQAAGTVHAI-LQPDLLE--KA 255

Query: 284 LDVLMPYLHLPVQSGSDRILKSMNRRHT-AYEYRQIIDRIRSVRPDIAISSDFIVGFPGE 342
           ++  +  L +  ++ +   L+  ++ H    +Y   I R+  +   + I+  F+ G   +
Sbjct: 256 VESGLRSLFVGFETLNSVNLREQHKYHNLNRDYSAAIRRLHDM--GVMINGSFVFGMDED 313

Query: 343 TDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387
            +  F  T++     G   A     +P  GT   ++ +++D   +
Sbjct: 314 DETVFDTTVEWAVNNGIETATFHILTPYPGT---DLYQRMDAEKR 355


>gi|294850199|ref|ZP_06790935.1| lipoyl synthase [Staphylococcus aureus A9754]
 gi|295407689|ref|ZP_06817477.1| lipoyl synthase [Staphylococcus aureus A8819]
 gi|295427408|ref|ZP_06820043.1| lipoyl synthase [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297246705|ref|ZP_06930526.1| lipoyl synthase [Staphylococcus aureus A8796]
 gi|294822973|gb|EFG39406.1| lipoyl synthase [Staphylococcus aureus A9754]
 gi|294967458|gb|EFG43499.1| lipoyl synthase [Staphylococcus aureus A8819]
 gi|295128796|gb|EFG58427.1| lipoyl synthase [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297176421|gb|EFH35691.1| lipoyl synthase [Staphylococcus aureus A8796]
          Length = 318

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 45/262 (17%), Positives = 90/262 (34%), Gaps = 21/262 (8%)

Query: 107 GCVAQAEG-EEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSI 165
            CV  A   EEILR+   + + +     Y   + + R +    V        ++ +  +I
Sbjct: 10  VCVVMATKNEEILRKPDWLKIKLNTNENYTGLKKMMREKNLNTVC-------EEAKCPNI 62

Query: 166 VDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEI 225
            +    R+     F+ +   C + C FC V      E+   L++    A  +    +  +
Sbjct: 63  HECWGARR--TATFMILGAVCTRACRFCAVKTGLPNEL--DLNEPERVAESVELMNLKHV 118

Query: 226 TLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLD 285
            +        R    D     +++ +  + E      +    S      D L        
Sbjct: 119 VITAV----ARDDLRDAGSNVYAETVRKVRERNPFTTIEILPSDMGGDYDALETLMASRP 174

Query: 286 VLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDD 345
            ++ +    V+  +      +  R T     + + R + ++PDI   S  +VG  GET +
Sbjct: 175 DILNHNIETVRRLTP----RVRARATYDRTLEFLRRSKELQPDIPTKSSIMVGL-GETIE 229

Query: 346 DFRATMDLVDKIGYAQAFSFKY 367
           +   TMD +           +Y
Sbjct: 230 EIYETMDDLRANDVDILTIGQY 251


>gi|288932099|ref|YP_003436159.1| radical SAM protein [Ferroglobus placidus DSM 10642]
 gi|288894347|gb|ADC65884.1| Radical SAM domain protein [Ferroglobus placidus DSM 10642]
          Length = 288

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 32/205 (15%), Positives = 68/205 (33%), Gaps = 28/205 (13%)

Query: 185 GCDKF-CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
           GC    CTFC   Y       +SL ++  +             L+ +       +    +
Sbjct: 24  GCSHNKCTFCG-SYKMKKFREKSLEEIWRD------------LLILKEFYPDAKRMFIAD 70

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV--------LMPYLHLPV 295
              F      L +I  + +  +       +    +      D          +  ++L +
Sbjct: 71  GNAFCMSTEKLLKIISMAKKVFPNLERISIYATPMDILAKSDEEISLLAESGLRLIYLGI 130

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP-DIAISSDFIVGFPG--ETDDDFRATMD 352
           +SG D +LK + +  T+   ++I+   R      + +S   I+G  G   +++    T  
Sbjct: 131 ESGDDVVLKEVKKGATS---KEILKAGRKAIENGVTLSVTAILGLGGRKRSEEHAENTAK 187

Query: 353 LVDKIGYAQAFSFKYSPRLGTPGSN 377
           L++++              GTP   
Sbjct: 188 LLNEMKPHYTAFLTLMVVEGTPLHR 212


>gi|227518567|ref|ZP_03948616.1| coproporphyrinogen dehydrogenase [Enterococcus faecalis TX0104]
 gi|227553094|ref|ZP_03983143.1| coproporphyrinogen dehydrogenase [Enterococcus faecalis HH22]
 gi|255976024|ref|ZP_05426610.1| coproporphyrinogen III oxidase [Enterococcus faecalis T2]
 gi|256958791|ref|ZP_05562962.1| coproporphyrinogen III oxidase [Enterococcus faecalis DS5]
 gi|257078822|ref|ZP_05573183.1| coproporphyrinogen III oxidase [Enterococcus faecalis JH1]
 gi|257419124|ref|ZP_05596118.1| coproporphyrinogen III oxidase [Enterococcus faecalis T11]
 gi|307271214|ref|ZP_07552497.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Enterococcus faecalis TX4248]
 gi|307279122|ref|ZP_07560180.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Enterococcus faecalis TX0860]
 gi|307291287|ref|ZP_07571171.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Enterococcus faecalis TX0411]
 gi|312899410|ref|ZP_07758741.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Enterococcus faecalis TX0470]
 gi|227073986|gb|EEI11949.1| coproporphyrinogen dehydrogenase [Enterococcus faecalis TX0104]
 gi|227177780|gb|EEI58752.1| coproporphyrinogen dehydrogenase [Enterococcus faecalis HH22]
 gi|255968896|gb|EET99518.1| coproporphyrinogen III oxidase [Enterococcus faecalis T2]
 gi|256949287|gb|EEU65919.1| coproporphyrinogen III oxidase [Enterococcus faecalis DS5]
 gi|256986852|gb|EEU74154.1| coproporphyrinogen III oxidase [Enterococcus faecalis JH1]
 gi|257160952|gb|EEU90912.1| coproporphyrinogen III oxidase [Enterococcus faecalis T11]
 gi|306497518|gb|EFM67051.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Enterococcus faecalis TX0411]
 gi|306504247|gb|EFM73459.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Enterococcus faecalis TX0860]
 gi|306512712|gb|EFM81361.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Enterococcus faecalis TX4248]
 gi|311293454|gb|EFQ72010.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Enterococcus faecalis TX0470]
 gi|315030964|gb|EFT42896.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Enterococcus faecalis TX4000]
 gi|315033700|gb|EFT45632.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Enterococcus faecalis TX0017]
 gi|315036785|gb|EFT48717.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Enterococcus faecalis TX0027]
 gi|315575638|gb|EFU87829.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Enterococcus faecalis TX0309B]
 gi|315579919|gb|EFU92110.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Enterococcus faecalis TX0309A]
          Length = 382

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 49/254 (19%), Positives = 98/254 (38%), Gaps = 28/254 (11%)

Query: 177 TAFLTIQEGCDKFCTFCVV--PYTRGIEISRSLSQVVDEARKLI----DNGVCEITLLGQ 230
           +A++ I   C+  C +C     +  G  +   +  ++ E +       +  +  I + G 
Sbjct: 5   SAYIHIPF-CEHICYYCDFNKVFLEGQPVDEYIQSLLKEIQLTQALYPEQEMKTIYIGGG 63

Query: 231 NVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT-SHPRDMSDCLIKAHGDLDVLMP 289
              +   K LD        +   L       R  +T  ++P D++   ++   +    + 
Sbjct: 64  TPTSLSAKQLD---VLLKGVREQL---TFDDRNEFTVEANPGDLTQEKLQVMKNYG--VN 115

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI-RSVRPDIAISSDFIVGFPGETDDDFR 348
            L + VQ+  DR+LK + R+HTA +  + +  + +    +++I  D I   PG+T + FR
Sbjct: 116 RLSMGVQTFDDRLLKKIGRKHTAADVYETMKFLEKENFTNVSI--DLIYALPGQTLESFR 173

Query: 349 ATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE----QVDENVKA-----ERLLCLQKKLR 399
            T+     +       +       T   N +     Q+ E         E +  ++KK R
Sbjct: 174 DTLTRALALDLPHYSLYSLILENKTMFMNWVRQGRLQLPEEEIEAQMFDETIEAMEKKGR 233

Query: 400 EQQVSFNDACVGQI 413
            Q    N A  G+ 
Sbjct: 234 HQYEVSNFALTGKE 247


>gi|148240097|ref|YP_001225484.1| oxygen independent coproporphyrinogen III oxidase [Synechococcus
           sp. WH 7803]
 gi|147848636|emb|CAK24187.1| Oxygen independent coproporphyrinogen III oxidase [Synechococcus
           sp. WH 7803]
          Length = 432

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 40/211 (18%), Positives = 71/211 (33%), Gaps = 21/211 (9%)

Query: 186 CDKFCTFC---VVPYTRGIEI-----SRSL----SQVVDEARKLIDNGVCEITLLGQNVN 233
           C + C +C   VVP    ++      S S+      ++ E R            +G    
Sbjct: 16  CHRRCFYCDFAVVPLGDRVQALDGPGSGSIALYLDSILQEIRLSPAGPPLATVYIGGGTP 75

Query: 234 AWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHL 293
           +       G       LL +L++  GL +    T      S  L      +   +  + L
Sbjct: 76  SLLTADQVGG------LLAALTDRFGLQQGAEVTLEMDPASFALDDLSALVRHGVNRVSL 129

Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS---DFIVGFPGETDDDFRAT 350
             QS  D +L ++ RRH   +  +    ++    D  + S   D I   P + D  + AT
Sbjct: 130 GGQSFDDGVLAALGRRHRRKDVLEACRWMQRFLQDGRLRSWSLDLIRNLPDQDDAAWAAT 189

Query: 351 MDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +     +       +  S   GT  +   +Q
Sbjct: 190 LSEAVALQAPHLSIYDLSIEPGTVFARREQQ 220


>gi|282898676|ref|ZP_06306664.1| Radical SAM [Cylindrospermopsis raciborskii CS-505]
 gi|281196544|gb|EFA71453.1| Radical SAM [Cylindrospermopsis raciborskii CS-505]
          Length = 546

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 53/237 (22%), Positives = 93/237 (39%), Gaps = 26/237 (10%)

Query: 179 FLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK 238
            + +   C + C FC+  Y      + SL   +  A +        + LLG +V      
Sbjct: 227 MVEVVRSCPEMCRFCLASYLTLPFRTASLEGSLIPAIEQGLKITNRLGLLGASVTQH--- 283

Query: 239 GLDGEKCTFSDLLYSLSEIK-GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQS 297
                   FSDLL  +S+ K   VRL   +     ++  L       D     L + V+S
Sbjct: 284 ------PEFSDLLDYISQPKYDDVRLSVASVRTNTVTQKLAHTLATRD--CHSLTIAVES 335

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPD--IAISSDFIVGFPGETDDDFRATMDLVD 355
           GS+++ + +N++    + ++II    + +      +    +VG PGE  +D  AT+ ++ 
Sbjct: 336 GSEKLRQIINKK---LDNQEIIQAAINAKAGGLSGLKLYGMVGIPGEEPEDLDATVTMMR 392

Query: 356 KIGYAQA------FSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFN 406
            I  A            + P+  TP              +RL  LQK+L+ Q + F 
Sbjct: 393 DIKKATPGLRLTLGCSTFVPKSHTPFQWFGVNKSAE---KRLQFLQKQLKPQGIDFR 446


>gi|253731531|ref|ZP_04865696.1| lipoyl synthase [Staphylococcus aureus subsp. aureus USA300_TCH959]
 gi|253732721|ref|ZP_04866886.1| lipoyl synthase [Staphylococcus aureus subsp. aureus TCH130]
 gi|297208440|ref|ZP_06924870.1| lipoyl synthase [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|297590232|ref|ZP_06948871.1| lipooyl synthase [Staphylococcus aureus subsp. aureus MN8]
 gi|300912516|ref|ZP_07129959.1| lipooyl synthase [Staphylococcus aureus subsp. aureus TCH70]
 gi|304381522|ref|ZP_07364172.1| lipoyl synthase [Staphylococcus aureus subsp. aureus ATCC BAA-39]
 gi|253724774|gb|EES93503.1| lipoyl synthase [Staphylococcus aureus subsp. aureus USA300_TCH959]
 gi|253729332|gb|EES98061.1| lipoyl synthase [Staphylococcus aureus subsp. aureus TCH130]
 gi|296887179|gb|EFH26082.1| lipoyl synthase [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|297576531|gb|EFH95246.1| lipooyl synthase [Staphylococcus aureus subsp. aureus MN8]
 gi|300886762|gb|EFK81964.1| lipooyl synthase [Staphylococcus aureus subsp. aureus TCH70]
 gi|304339885|gb|EFM05829.1| lipoyl synthase [Staphylococcus aureus subsp. aureus ATCC BAA-39]
 gi|312438713|gb|ADQ77784.1| lipoyl synthase [Staphylococcus aureus subsp. aureus TCH60]
 gi|320141258|gb|EFW33105.1| lipoyl synthase [Staphylococcus aureus subsp. aureus MRSA131]
 gi|320143030|gb|EFW34821.1| lipoyl synthase [Staphylococcus aureus subsp. aureus MRSA177]
          Length = 323

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 45/262 (17%), Positives = 90/262 (34%), Gaps = 21/262 (8%)

Query: 107 GCVAQAEG-EEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSI 165
            CV  A   EEILR+   + + +     Y   + + R +    V        ++ +  +I
Sbjct: 15  VCVVMATKNEEILRKPDWLKIKLNTNENYTGLKKMMREKNLNTVC-------EEAKCPNI 67

Query: 166 VDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEI 225
            +    R+     F+ +   C + C FC V      E+   L++    A  +    +  +
Sbjct: 68  HECWGARR--TATFMILGAVCTRACRFCAVKTGLPNEL--DLNEPERVAESVELMNLKHV 123

Query: 226 TLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLD 285
            +        R    D     +++ +  + E      +    S      D L        
Sbjct: 124 VITAV----ARDDLRDAGSNVYAETVRKVRERNPFTTIEILPSDMGGDYDALETLMASRP 179

Query: 286 VLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDD 345
            ++ +    V+  +      +  R T     + + R + ++PDI   S  +VG  GET +
Sbjct: 180 DILNHNIETVRRLTP----RVRARATYDRTLEFLRRSKELQPDIPTKSSIMVGL-GETIE 234

Query: 346 DFRATMDLVDKIGYAQAFSFKY 367
           +   TMD +           +Y
Sbjct: 235 EIYETMDDLRANDVDILTIGQY 256


>gi|113954687|ref|YP_732102.1| SAM radical enzyme [Synechococcus sp. CC9311]
 gi|113882038|gb|ABI46996.1| SAM radical enzyme [Synechococcus sp. CC9311]
          Length = 530

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 55/261 (21%), Positives = 95/261 (36%), Gaps = 27/261 (10%)

Query: 174 RGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVN 233
                 + +   C + C FC+  Y      + SL   +  A +        + LLG +V 
Sbjct: 196 WPDIHMVEVVRSCPELCRFCLASYLTLPFRTPSLDDGLIPAVEKGLKATRRLGLLGASVT 255

Query: 234 AWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHL 293
                        F+DLL  L +      LR + S  R  +     A          + +
Sbjct: 256 QH---------PQFNDLLQWLDQ-DRFDDLRVSVSSVRAATVTPQLAGTLSRRGSKSVTI 305

Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD--IAISSDFIVGFPGETDDDFRATM 351
            ++SGSDR+ + +N++       +I    R  +     ++    +VG P E DDD  AT 
Sbjct: 306 AIESGSDRMRRVVNKKLNRE---EISAAARYAKEGGLKSLKLYGMVGLPTEQDDDIEATA 362

Query: 352 DLVDK-------IGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVS 404
           DL+         + +       + P+  TP         E  K  RL  L K+L+ + V 
Sbjct: 363 DLLLDLKKQTPGLRFT-LGVSTFVPKAHTP-FQWQGVRPEADK--RLKRLAKRLKPKGVE 418

Query: 405 FNDACVG-QIIEVLIEKHGKE 424
                 G  +I+ L+ +  + 
Sbjct: 419 LRPESYGWSVIQALLSRSDRR 439


>gi|32476125|ref|NP_869119.1| coproporphyrinogen III oxidase [Rhodopirellula baltica SH 1]
 gi|32446669|emb|CAD76505.1| coproporphyrinogen III oxidase [Rhodopirellula baltica SH 1]
          Length = 389

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/216 (15%), Positives = 70/216 (32%), Gaps = 20/216 (9%)

Query: 165 IVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCE 224
           I  GG+ + + +   +     C   C +C      G        ++ D+    ++  +  
Sbjct: 4   IPPGGWPQPQSLYVHVPF---CRHRCGYCNFSVIAGR------DELQDQYLDAVERELKG 54

Query: 225 ITLLGQNVNAWRGKGLDGEKCTFS-----DLLYSLSEIKGLVRLRYTTSHPR--DMSDCL 277
           I      +         G     S      L  ++S    +      T+     D+S   
Sbjct: 55  IDNSSHELPLRTIFLGGGTPTRLSATRLQRLHRAISNAFPIADDAEITAEANPEDISPEC 114

Query: 278 IKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIV 337
           + A   +   +  + L VQS     L+ + R H        I+       +++I  D I 
Sbjct: 115 LDALQAIG--VNRISLGVQSFDAEKLRCLERGHDESIALSAIESAHRRVGNVSI--DLIF 170

Query: 338 GFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
           G P E+   ++  + +      +   ++  +   GT
Sbjct: 171 GAPNESLATWQNDLSIAAASSISHVSTYALTFEKGT 206


>gi|88807931|ref|ZP_01123442.1| lipoyl synthase [Synechococcus sp. WH 7805]
 gi|88787970|gb|EAR19126.1| lipoyl synthase [Synechococcus sp. WH 7805]
          Length = 292

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/220 (15%), Positives = 70/220 (31%), Gaps = 11/220 (5%)

Query: 153 DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVD 212
           D  +    +  S  + G     G   FL +  GC + C +C +        +   ++   
Sbjct: 29  DLKLNTVCQEASCPNIGECFAGGTATFLIMGPGCTRACPYCDI-DFDKSVRALDPTEPER 87

Query: 213 EARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
               +   G+  + +   N    R    DG    F   +  + +   L  +         
Sbjct: 88  LGVAVARLGLKHVVITSVN----RDDLPDGGASQFVACIEQVKQRSPLTTIELLIPDFCG 143

Query: 273 MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAIS 332
             + L         ++ +    V     R+ +    +       +++ R+R   P     
Sbjct: 144 NWEALATVMAAAPHVLNHNIETV----PRMYRLARPQGIYERSLELLKRVRDDWPRAYSK 199

Query: 333 SDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY-SPRL 371
           S  +VG  GE+D++  +T+  +           +Y SP  
Sbjct: 200 SGLMVGL-GESDEEVISTLRDLRDHRVDIVTIGQYLSPGP 238


>gi|95929527|ref|ZP_01312269.1| Radical SAM [Desulfuromonas acetoxidans DSM 684]
 gi|95134224|gb|EAT15881.1| Radical SAM [Desulfuromonas acetoxidans DSM 684]
          Length = 421

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 64/339 (18%), Positives = 113/339 (33%), Gaps = 62/339 (18%)

Query: 48  FFSQGYERVNSMDDADLIVLN---TCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVV 104
           F  +  + ++  + ADL+ L+   TC             L R   +     K G    V+
Sbjct: 41  FTDENVQTLDFDEPADLVALSVMLTC------------QLPRAFEIAAEYRKRGRT--VM 86

Query: 105 VAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERL- 163
             G       EE+ +     + V   +   R  +++     G+     +Y  +     L 
Sbjct: 87  FGGIATMLHAEEVQQ---HADCVFIGEAEGRTEQVIRDFERGELKPVYNYLQQHPPIELV 143

Query: 164 -----SIVDGGYNRKRGVTAFLTI--QEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEAR 215
                 I+D      RGV     +    GC   C  C   Y  G E   R + +V+ E  
Sbjct: 144 GTARREILDRDCYNYRGVQMLDLVHASRGCKFKCFPCCTGYLGGHEFRPRPIEKVIAEME 203

Query: 216 KLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSD 275
            + +N +     +  N  A        +K    +L  ++  +K         SHP    D
Sbjct: 204 AIPNNRM----FIVDNSMAQ-------DKQWLLELFEAMKPLKKKW-----VSHPLLDDD 247

Query: 276 CLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDF 335
            ++KA  D            Q+  D          T+   R  I R++     I +    
Sbjct: 248 DVLKAAADAG-----AWYVYQAVFD----------TSDVIRNRIKRLKDF--GIGVEGTI 290

Query: 336 IVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
           I+G   ++ DD R  +D + ++    A     +P   +P
Sbjct: 291 ILGTDDQSADDIRRLVDFLIEVELDVAEFTILTPFPHSP 329


>gi|291544385|emb|CBL17494.1| iron-only hydrogenase maturation protein HydE [Ruminococcus sp.
           18P13]
          Length = 346

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 39/256 (15%), Positives = 76/256 (29%), Gaps = 41/256 (16%)

Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLT----IQEGCDKFCTFCVV 195
           LERA + +  + +DY+ ED+           +R  G   F+         C   C +C +
Sbjct: 15  LERAEYIR--LLSDYTEEDRLYAQEKARKIGDRYFGKQIFVRGLIEFTSYCKNDCYYCGL 72

Query: 196 PYTRGI-EISR-SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS 253
             +    E  R +  +++D  R+    G     L G       G+     +     ++  
Sbjct: 73  RRSNPKAERYRLTEEEILDCCREGYALGFRTFVLQG-------GEDAYFTRERMVHIIRQ 125

Query: 254 L----------SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
           +            I    R  Y           L++            H  V       L
Sbjct: 126 IKGAYPDCALTLSIGERCRADYAAFRQAGADRYLLRHETADP-----AHYRVLHPEPLSL 180

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
                        + ++ ++ +         F+VG PG+T +     +  + ++      
Sbjct: 181 ---------EHRIKCLETLKEL--GFQTGCGFMVGSPGQTPETLAEDLLFIRRLQPQMVG 229

Query: 364 SFKYSPRLGTPGSNML 379
              + P   TP  N  
Sbjct: 230 IGPFIPHGDTPFHNKP 245


>gi|291165575|gb|EFE27624.1| radical SAM domain protein [Filifactor alocis ATCC 35896]
          Length = 373

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 84/220 (38%), Gaps = 18/220 (8%)

Query: 169 GYNRKRGVTAFLTI-QEGCDKFCTFC----VVPYTRGIEISRSLSQVVDEARKLIDNGVC 223
           G +RK+ +T  + +  +GC   C FC    +   T  + +SR+ + + +   +  ++   
Sbjct: 3   GNDRKKKITIPIFVPHKGCPNDCVFCNQRKITGMTEEMTVSRAKATIEEFLSEKREDAFY 62

Query: 224 EITLLGQNVNAWRGKGLDGEKCTFSDLLYS--LSEIKGLVRLRYTTSHPRDMSDCLIKAH 281
           EI   G +  A      D  +     L +   LS     VR+        +M    ++ +
Sbjct: 63  EIAFFGGSFTAI----SDARRVELLQLAHQYILSGEVKSVRISTRPDAIDEMILEELQQY 118

Query: 282 GDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPG 341
           G     +  + L VQS  +R+L+  NR H A    +    I+       +    ++G P 
Sbjct: 119 G-----VQVIELGVQSLDERVLQESNRGHDAACVYRSAKLIQEY--GFQLGLQMMIGLPF 171

Query: 342 ETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           ++++    T +    I       +       T  +  +++
Sbjct: 172 DSEETIWFTANEFVNIKPDMVRIYPTLVVEDTKLATWMKE 211


>gi|283787148|ref|YP_003367013.1| radical SAM superfamily protein [Citrobacter rodentium ICC168]
 gi|282950602|emb|CBG90273.1| radical SAM superfamily protein [Citrobacter rodentium ICC168]
          Length = 721

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 47/281 (16%), Positives = 90/281 (32%), Gaps = 54/281 (19%)

Query: 166 VDGGYNRKRGVTAF------LTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLI 218
           V       R + A+      + I  GC   C+FC +    G  I SRS   +++E   + 
Sbjct: 360 VPHPAYGNRRIPAYEMIRFSINIMRGCFGGCSFCSITEHEGRIIQSRSEDSIINEIEAIR 419

Query: 219 DN--GVCEIT--LLGQNVNAWR----------------------GKGLDGEKCTFSDLLY 252
           D   G   +   L G   N +                          +D       +L  
Sbjct: 420 DTVPGFTGVISDLGGPTANMYMLRCKSPRAEQTCRRLSCVYPDICPHMDTNHEPTINLYR 479

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRRH 310
              ++KG+ ++   +    D++    +   +L    +  YL +  +   +  L  M +  
Sbjct: 480 RARDLKGIKKILIASGVRYDIAVEDPRYIKELASHHVGGYLKIAPEHTEEGPLSKMMKPG 539

Query: 311 --TAYEYRQIIDRI-RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY--AQAFSF 365
             +   ++++ D   +    +  +   FI   PG  D+D       + +  +   Q  +F
Sbjct: 540 MGSYDRFKELFDLYSKQAGKEQYLIPYFISAHPGTRDEDMVNLALWLKRHRFRLDQVQNF 599

Query: 366 KYSPRL-------------GTPGSNMLE-QVDENVKAERLL 392
             SP               G  G    +  V +  K  RL 
Sbjct: 600 YPSPLANSTTMYYTGKNPLGKIGYKSEDVVVPKGDKQRRLH 640


>gi|282878929|ref|ZP_06287693.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Prevotella buccalis ATCC 35310]
 gi|281298928|gb|EFA91333.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Prevotella buccalis ATCC 35310]
          Length = 386

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/145 (20%), Positives = 65/145 (44%), Gaps = 8/145 (5%)

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
            +P D++   ++        +  + + VQS S+  LK ++RRH A +   ++ ++RS+  
Sbjct: 108 CNPDDITPSFVQFLQHSP--VNRVSMGVQSFSNERLKFLHRRHHAQDISPVVQQLRSIGI 165

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML-----EQV 382
           D  IS D + GFP +T D+++  +     +      ++      GTP   +L     +++
Sbjct: 166 D-NISVDLMFGFPNQTLDEWKLDIQKALALRVEHISAYSLMYEEGTPLYQLLRNNKVKEI 224

Query: 383 DENVKAERLLCLQKKLREQQVSFND 407
           D+ +       L  +L+       +
Sbjct: 225 DDELSLTMYQTLVDELKASGYEHYE 249


>gi|182438730|ref|YP_001826449.1| hypothetical protein SGR_4937 [Streptomyces griseus subsp. griseus
           NBRC 13350]
 gi|178467246|dbj|BAG21766.1| conserved hypothetical protein [Streptomyces griseus subsp. griseus
           NBRC 13350]
          Length = 642

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 73/419 (17%), Positives = 125/419 (29%), Gaps = 74/419 (17%)

Query: 52  GYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVV----VAG 107
           G+   N    AD I    C +     + V      IR  K      G D ++       G
Sbjct: 150 GHAAFNPEPIADFI---DCAVVGDGEQAVLEITEIIRAWKAEGRPGGRDEVLFRLSKTGG 206

Query: 108 CVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVD 167
                  +        +  VV  ++                V+D D     K   + + +
Sbjct: 207 VYVPRFYDVEYLPDGRIGRVVPNRSGVPWR------VSKHTVMDLDEWPYPKQPLVPLAE 260

Query: 168 GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEIT 226
             + R       + I  GC + C FC           RS++ + +   K +   G  E+ 
Sbjct: 261 TVHERMS-----VEIFRGCTRGCRFCQAGMITRPVRERSITGIGEMVDKGLKATGFEEVG 315

Query: 227 LLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV 286
           LL     +       G+        Y+  +I     L   ++     +  L         
Sbjct: 316 LLS---LSSADHSEIGDIAKGLADRYTDDKIG----LSLPSTRVDAFNVDLANELTRNGR 368

Query: 287 LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR-----IRSVRPDIAISSDFIVGFPG 341
               L    + GS+R+ K +N+  +  +  + +        R V+        F+ G P 
Sbjct: 369 -RSGLTFAPEGGSERMRKVINKMVSEEDLIRTVATAYGNGWRQVK------LYFMCGLPT 421

Query: 342 ETDDDFRATMDLV-------------DKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           ETD+D     D+              + I         + P+  TP      Q+      
Sbjct: 422 ETDEDVLQIGDMAVNVIAKGREVSGQNDIRCT-VSIGGFVPKPHTP-FQWAPQLSAEDTD 479

Query: 389 ERLLCLQKKLR---------------------EQQVSFNDACVGQIIEVLIEKHGKEKG 426
            RL  L+ K+R                     E  +S  D  VG +I  + E  G+  G
Sbjct: 480 ARLKKLRDKIRGDKKYGRSIGFRYHDGKPGIVEGLLSRGDRRVGSVIRAVYESGGRFDG 538


>gi|326779379|ref|ZP_08238644.1| Radical SAM domain protein [Streptomyces cf. griseus XylebKG-1]
 gi|326659712|gb|EGE44558.1| Radical SAM domain protein [Streptomyces cf. griseus XylebKG-1]
          Length = 642

 Score = 55.7 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 73/419 (17%), Positives = 125/419 (29%), Gaps = 74/419 (17%)

Query: 52  GYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVV----VAG 107
           G+   N    AD I    C +     + V      IR  K      G D ++       G
Sbjct: 150 GHAAFNPEPIADFI---DCAVVGDGEQAVLEITEIIRAWKAEGRPGGRDEVLFRLSKTGG 206

Query: 108 CVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVD 167
                  +        +  VV  ++                V+D D     K   + + +
Sbjct: 207 VYVPRFYDVEYLPDGRIGRVVPNRSGVPWR------VSKHTVMDLDEWPYPKQPLVPLAE 260

Query: 168 GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEIT 226
             + R       + I  GC + C FC           RS++ + +   K +   G  E+ 
Sbjct: 261 TVHERMS-----VEIFRGCTRGCRFCQAGMITRPVRERSITGIGEMVDKGLKATGFEEVG 315

Query: 227 LLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV 286
           LL     +       G+        Y+  +I     L   ++     +  L         
Sbjct: 316 LLS---LSSADHSEIGDIAKGLADRYTDDKIG----LSLPSTRVDAFNVDLANELTRNGR 368

Query: 287 LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR-----IRSVRPDIAISSDFIVGFPG 341
               L    + GS+R+ K +N+  +  +  + +        R V+        F+ G P 
Sbjct: 369 -RSGLTFAPEGGSERMRKVINKMVSEEDLIRTVATAYGNGWRQVK------LYFMCGLPT 421

Query: 342 ETDDDFRATMDLV-------------DKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           ETD+D     D+              + I         + P+  TP      Q+      
Sbjct: 422 ETDEDVLQIGDMAVNVIAKGREVSGQNDIRCT-VSIGGFVPKPHTP-FQWAPQLSAEDTD 479

Query: 389 ERLLCLQKKLR---------------------EQQVSFNDACVGQIIEVLIEKHGKEKG 426
            RL  L+ K+R                     E  +S  D  VG +I  + E  G+  G
Sbjct: 480 ARLKKLRDKIRGDKKYGRSIGFRYHDGKPGIVEGLLSRGDRRVGSVIRAVYESGGRFDG 538


>gi|291535621|emb|CBL08733.1| Fe-S oxidoreductase [Roseburia intestinalis M50/1]
          Length = 666

 Score = 55.7 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/216 (15%), Positives = 74/216 (34%), Gaps = 12/216 (5%)

Query: 144 RFGKRVVDTDYSVEDKFERLSI-VDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           R G  ++ T          +    D   + K  +  + +   GC   C++C+        
Sbjct: 215 RSGDEIIFTAPREMLDLSDIPFCYDKAGDFKNRIIYYES-SRGCPFSCSYCL-SSVEKQL 272

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
             R    V  E +  ID  V ++  + +  N               ++   + E    + 
Sbjct: 273 RFRDAELVKKELQFFIDREVPQVKFVDRTFNCNH--------AHAMEIWSYIKEHDNGIT 324

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
             +       + +  +   G +   +  L + VQS +   +K ++R       ++++  +
Sbjct: 325 NFHFEISADLLREEELALIGTMRPGLIQLEIGVQSTNGATIKEIHRTMQLERLKEVVKEV 384

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
              R +I    D I G P E  D F  + D + ++ 
Sbjct: 385 -QKRENIHEHLDLIAGLPFEDYDTFAKSFDEIYELR 419


>gi|213161788|ref|ZP_03347498.1| hypothetical protein Salmoneentericaenterica_18029 [Salmonella
           enterica subsp. enterica serovar Typhi str. E00-7866]
          Length = 356

 Score = 55.7 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 39/227 (17%), Positives = 78/227 (34%), Gaps = 34/227 (14%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDN--GVCEIT--LLGQNVNA 234
           + I  GC   C+FC +    G  I SRS   +++E   + D   G   +   L G   N 
Sbjct: 13  INIMRGCFGGCSFCSITEHEGRIIQSRSEDSIINEIEAIRDTVPGFTGVISDLGGPTANM 72

Query: 235 WR----------------------GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
           +                          +D +     +L     E+KG+ ++   +    D
Sbjct: 73  YMLRCKSPRAEQTCRRLSCVYPDICPHMDTDHTPTINLYRRARELKGIKKILIASGVRYD 132

Query: 273 MSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRRH--TAYEYRQIIDRI-RSVRP 327
           ++    +   +L    +  YL +  +   +  L  M +    +   ++++ D   +    
Sbjct: 133 IAVEDPRYIKELASHHVGGYLKIAPEHTEEGPLSKMMKPGMGSYDRFKELFDLYSKQAGK 192

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGY--AQAFSFKYSPRLG 372
           +  +   FI   PG  D+D       + +  +   Q  +F  SP   
Sbjct: 193 EQYLIPYFISAHPGTRDEDMVNLALWLKRHRFRLDQVQNFYPSPLAN 239


>gi|255944209|ref|XP_002562872.1| Pc20g03200 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|306755840|sp|B6HFQ1|LIPA_PENCW RecName: Full=Lipoyl synthase, mitochondrial; AltName: Full=Lipoate
           synthase; Short=LS; Short=Lip-syn; AltName: Full=Lipoic
           acid synthase; Flags: Precursor
 gi|211587607|emb|CAP85649.1| Pc20g03200 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 416

 Score = 55.7 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/229 (14%), Positives = 81/229 (35%), Gaps = 10/229 (4%)

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQ-EGCDKFCTFCVVPYTR 199
           +R +   R ++     E+          G + K   TA + +  + C + C FC V  +R
Sbjct: 117 QRLKKDLRGLNLHTVCEEARCPNISDCWGGSDKSSATATIMLMGDTCTRGCRFCSVKTSR 176

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
                    +  + A  +    +  + L   +    R   +DG    F++ +  + + K 
Sbjct: 177 APP-PLDPHEPENTAEAISRWSLGYVVLTSVD----RDDLVDGGARHFAETVIKIKQKKP 231

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
            + +   T   R  ++           +  +    V+  +  +     RR T  +  +++
Sbjct: 232 SMLVECLTGDFRGDTEMAALVARSGLDVYAHNVETVEELTPFVRD---RRATFQQSIRVL 288

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
           D  +   P++   +  ++G  GETD+     +  +  +        +Y 
Sbjct: 289 DSAKKAVPELVTKTSLMLGL-GETDEQLWDALRQLRAVNVDVVTFGQYM 336


>gi|157376624|ref|YP_001475224.1| lipoyl synthase [Shewanella sediminis HAW-EB3]
 gi|189046792|sp|A8FZ23|LIPA_SHESH RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|157318998|gb|ABV38096.1| lipoic acid synthetase [Shewanella sediminis HAW-EB3]
          Length = 321

 Score = 55.7 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/184 (14%), Positives = 56/184 (30%), Gaps = 14/184 (7%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V    G  +    ++    A+ + D  +  + +   +    R    DG   
Sbjct: 94  CTRRCPFCDV--AHGRPLKPDANEPKKMAQTIKDMKLKYVVITSVD----RDDLRDGGAQ 147

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLD--VLMPYLHLPVQSGSDRIL 303
            F+D +  +  +   +++       R   D  +         V    L            
Sbjct: 148 HFADCIREIRLLNPSIKIEILVPDFRGRIDAALDILATEPPDVFNHNLETAPMHY----- 202

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           +             ++ + +   PDI   S  ++G  GET+D     +  +         
Sbjct: 203 RKARPGANYQWSLDLLKKFKERHPDIPTKSGLMMGL-GETNDQIAEVLKDLRAHNVEMLT 261

Query: 364 SFKY 367
             +Y
Sbjct: 262 LGQY 265


>gi|238019348|ref|ZP_04599774.1| hypothetical protein VEIDISOL_01212 [Veillonella dispar ATCC 17748]
 gi|237864047|gb|EEP65337.1| hypothetical protein VEIDISOL_01212 [Veillonella dispar ATCC 17748]
          Length = 394

 Score = 55.7 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 77/220 (35%), Gaps = 27/220 (12%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD---- 241
           C + C +C  P  +          + D     +   V EI L        + + +D    
Sbjct: 25  CKQKCMYCDFPAYQN---------LQDYYETYVYALVQEIDLWVTEHPESKSRPIDTIYF 75

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDC------LIKAHGDLDVL-MPYLHLP 294
           G        +  L  I   ++  +T +    M+         ++    L  L    +   
Sbjct: 76  GGGTPTELSIQQLQMIVDKIKSTFTITDDCHMTIESNPGEVDLQYLTKLVNLGFNRISFG 135

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA-ISSDFIVGFPGETDDDFRATMDL 353
           VQ+  D+ L  ++R H   + +Q +   +        I+ D I G P +T +D +  +D+
Sbjct: 136 VQTFDDKALTMLHRSHNGEKAKQAVYDAKEA--GFTDINIDLIYGLPRQTLEDIQHNLDI 193

Query: 354 VDKIGYAQAFSFKYSPRLGTPGSNMLEQ----VDENVKAE 389
           V  +      ++     +GT   +++++    +      E
Sbjct: 194 VKDLPINHISTYGLQVEVGTYLYHLVDKNLISIPSETIDE 233


>gi|288927608|ref|ZP_06421455.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Prevotella sp. oral taxon 317 str. F0108]
 gi|288330442|gb|EFC69026.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Prevotella sp. oral taxon 317 str. F0108]
          Length = 384

 Score = 55.7 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/114 (27%), Positives = 54/114 (47%), Gaps = 3/114 (2%)

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
            +P D++    +    L   +  + + VQ+ SD  L  + RRH A +    I+R+R V  
Sbjct: 106 CNPDDITPQFAQTISRLP--VNRISMGVQTFSDERLTFLRRRHKATDIAPAIERLRQVGI 163

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +  IS D I GFP +T D++   +    ++G     ++      GTP   +L+Q
Sbjct: 164 N-NISIDLIFGFPKQTLDEWAIDLQNAIELGVEHISAYSLMYEEGTPLFRLLQQ 216


>gi|160888990|ref|ZP_02069993.1| hypothetical protein BACUNI_01410 [Bacteroides uniformis ATCC 8492]
 gi|317479274|ref|ZP_07938409.1| hypothetical protein HMPREF1007_01525 [Bacteroides sp. 4_1_36]
 gi|156861457|gb|EDO54888.1| hypothetical protein BACUNI_01410 [Bacteroides uniformis ATCC 8492]
 gi|316904562|gb|EFV26381.1| hypothetical protein HMPREF1007_01525 [Bacteroides sp. 4_1_36]
          Length = 612

 Score = 55.7 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 57/330 (17%), Positives = 109/330 (33%), Gaps = 71/330 (21%)

Query: 108 CVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVD 167
           C+   + E    R      +      Y    +L+++     VV+  Y    + E     D
Sbjct: 233 CLKDKKKEAANFRH-----IEEESNKYTASRILQKSGKLTVVVNPPYPPLTEAELDRSFD 287

Query: 168 GGYNR-------KRGVTAFLTI------QEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDE 213
             Y R        + + A+  I        GC   C FC +   +G   +SRS   ++ E
Sbjct: 288 LPYTRLPHPKYKGKRIPAYDMIKFSVNLHRGCFGGCAFCTISAHQGKFIVSRSKESILKE 347

Query: 214 AR---KLIDNGVCEITLLGQNVNAWRGKGLDGEKCT----------------------FS 248
            +   +L D       L G + N +R KG D   C                         
Sbjct: 348 VKAITELPDFKGYLSDLGGPSANMYRMKGRDEAVCRKCKRPSCIYPKVCPNLNTDHRPLL 407

Query: 249 DLLYSLSEIKGLVRLRY-----------------TTSHPRDMSDCLIKAHGDLDVLMPYL 291
           D+ +++  + G+ +                    T    ++ +  LI  H     +   L
Sbjct: 408 DIYHAVDALPGIKKSFIGSGVRYDLLLHQSKDPNTNKSTQEYTRELIARH-----VSGRL 462

Query: 292 HLPVQSGSDRILKSMNRRHTAYE--YRQIIDRIRSVRPDIA--ISSDFIVGFPGETDDDF 347
            +  +  SDR+L  M +   +    +++I DRI +    +   +   FI   PG  ++D 
Sbjct: 463 KVAPEHTSDRVLNIMRKPPFSQFGEFKKIFDRI-NHEEGLRQQLIPYFISSHPGCKEEDM 521

Query: 348 RATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
                +  ++ +       ++P   T  + 
Sbjct: 522 AELAVITKRLDFHLEQVQDFTPTPMTVATE 551


>gi|153940354|ref|YP_001392908.1| radical SAM family protein [Clostridium botulinum F str. Langeland]
 gi|168181023|ref|ZP_02615687.1| radical SAM protein, TIGR01212 family [Clostridium botulinum NCTC
           2916]
 gi|152936250|gb|ABS41748.1| radical SAM protein, TIGR01212 family [Clostridium botulinum F str.
           Langeland]
 gi|182668096|gb|EDT80075.1| radical SAM protein, TIGR01212 family [Clostridium botulinum NCTC
           2916]
 gi|295320885|gb|ADG01263.1| radical SAM protein, TIGR01212 family [Clostridium botulinum F str.
           230613]
 gi|322807879|emb|CBZ05454.1| predicted Fe-S oxidoreductase [Clostridium botulinum H04402 065]
          Length = 310

 Score = 55.7 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/199 (15%), Positives = 65/199 (32%), Gaps = 15/199 (7%)

Query: 188 KFCTFCVVPYT------RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD 241
             C +C    +      R  +I +    +    ++   +            N +    + 
Sbjct: 46  GGCIYCSERGSGDFAGDRNFKIHKQFEDIKKIMKEKWSSDKYIAYFQA-YTNTYAPVNIL 104

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
            EK   +     +  +    R         ++ + L         +  ++ L +Q+ +D 
Sbjct: 105 REKYEEAMSEEGVVALAIATRPDCLDQDVLNLIEEL------SKKIYIWVELGLQTVNDE 158

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
             K +NR +    + + +  +R    DI + S  I G PGET +D   T+  + K+    
Sbjct: 159 TAKIINRGYKLNVFEKAVKDLRERNIDIVVHS--IFGLPGETKEDMIGTVKYISKLDIQG 216

Query: 362 AFSFKYSPRLGTPGSNMLE 380
                      TP   + E
Sbjct: 217 VKFHLLHLLKDTPLVKLYE 235


>gi|317154480|ref|YP_004122528.1| Radical SAM domain-containing protein [Desulfovibrio aespoeensis
           Aspo-2]
 gi|316944731|gb|ADU63782.1| Radical SAM domain protein [Desulfovibrio aespoeensis Aspo-2]
          Length = 556

 Score = 55.7 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/235 (15%), Positives = 78/235 (33%), Gaps = 33/235 (14%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
           L +  GC   C FC   +         L ++             ++ L+G  +  W    
Sbjct: 229 LEVNRGCPYGCRFCAAGFIYRPPRHADLDELKRIVTL---ADPPKVGLVGTALTDW---- 281

Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
                      L  L   K    L  ++     +++ L+    +    +  + L ++  S
Sbjct: 282 -----PDLLPFLKWLHGQKKKFSL--SSMRADGITEELLVYLRE--RGIRTVTLALEGAS 332

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV----- 354
           +R+ + M+++    ++   + R+ +      +    I G+PGETD D+    + +     
Sbjct: 333 ERLRRMMSKKLKPEDFLNAV-RLCARYGVNHLKLYLIAGWPGETDADYDELREFLAGIIR 391

Query: 355 --------DKIGYAQAFSFKYS--PRLGTPGSNMLEQVDENVKAERLLCLQKKLR 399
                    K  + +      S  P+  TP         E+    R+  L   ++
Sbjct: 392 IRSEEPGGRKKQFMRITIGVSSLVPKPFTP-FQWAPMASESALEARMKQLTAMVK 445


>gi|237797597|ref|ZP_04586058.1| coproporphyrinogen III oxidase [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331020447|gb|EGI00504.1| coproporphyrinogen III oxidase [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 460

 Score = 55.7 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 35/194 (18%), Positives = 67/194 (34%), Gaps = 14/194 (7%)

Query: 186 CDKFCTFCVVPYTRGIEISR------SLSQVVDEARKLIDNG--VCEITLLGQNVNAWRG 237
           C   C +C        + SR       L   +      +  G  V ++ L G        
Sbjct: 63  CANICYYCACNKVVTKDRSRAQLYLQRLEHEIQMLACHLAPGQVVKQLHLGGGTPTFLNH 122

Query: 238 KGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQS 297
           + L             L +  G   +          +  L++  G        + L VQ 
Sbjct: 123 EELRRLMAQLRACFTLLDDDSGDYSIEIDPREADWATMGLLRELG-----FNRVSLGVQD 177

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
               + +++NR  +  E R I++  R+++   +++ D I G P +T D F  T+D +  +
Sbjct: 178 LDPAVQRAINRMQSLEETRAIVEAARTLQFR-SVNIDLIYGLPRQTPDAFSGTLDEIINL 236

Query: 358 GYAQAFSFKYSPRL 371
              +   F Y+   
Sbjct: 237 QPDRLSVFNYAHLP 250


>gi|237737606|ref|ZP_04568087.1| oxygen-independent coproporphyrinogen III oxidase [Fusobacterium
           mortiferum ATCC 9817]
 gi|229419486|gb|EEO34533.1| oxygen-independent coproporphyrinogen III oxidase [Fusobacterium
           mortiferum ATCC 9817]
          Length = 341

 Score = 55.7 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/199 (17%), Positives = 61/199 (30%), Gaps = 15/199 (7%)

Query: 185 GCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLID----NGVCEITLLGQNVNAWRGKGL 240
           GC   C FC      G E   ++  + +     ++    N   E+   G        K  
Sbjct: 14  GCPNSCVFCNQKKINGRETDVTMEDLKNIIEMYLETLPKNSKKEVAFFGGTFTGISMKLQ 73

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL-MPYLHLPVQSGS 299
           +    T  + +    +I G+ RL        D      +    L    +  + L VQS  
Sbjct: 74  EEYLKTAYEYIKR-GDISGI-RLSTRPDCIND------EIVAQLKKYGVTSVELGVQSLD 125

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
           + +L +  R +      +    I+     I +    ++G P  TD+    T      +  
Sbjct: 126 EEVLLATERYYPVSVVAEACKTIKKY--GIELGIQLMIGLPKSTDESDYETAVKALDMEP 183

Query: 360 AQAFSFKYSPRLGTPGSNM 378
                +       T   NM
Sbjct: 184 DMVRIYPTLVIKNTKMENM 202


>gi|228474398|ref|ZP_04059133.1| lipoyl synthase [Staphylococcus hominis SK119]
 gi|314936854|ref|ZP_07844201.1| lipoyl synthase [Staphylococcus hominis subsp. hominis C80]
 gi|228271757|gb|EEK13104.1| lipoyl synthase [Staphylococcus hominis SK119]
 gi|313655473|gb|EFS19218.1| lipoyl synthase [Staphylococcus hominis subsp. hominis C80]
          Length = 306

 Score = 55.7 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 41/256 (16%), Positives = 90/256 (35%), Gaps = 20/256 (7%)

Query: 112 AEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYN 171
            + EEILR+   + + +     Y   + + R +         ++V ++ +  +I +    
Sbjct: 3   TKNEEILRKPDWLKIKLNTNENYIGLKKMMREKN-------LHTVCEEAKCPNIHECWGA 55

Query: 172 RKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQN 231
           R+     F+ +   C + C FC V      E+   L++    A  +    +  + +    
Sbjct: 56  RR--TATFMILGAVCTRACRFCAVKTGLPNEL--DLNEPERVAESVELMNLKHVVITAV- 110

Query: 232 VNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL 291
               R    D     +++ +  + E      +    S      + L         ++ + 
Sbjct: 111 ---ARDDLRDAGSNVYAETVRKVRERNPYTTIEILPSDMGGDYEALETLMASRPDILNHN 167

Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351
              V+  +      +  R T     + + R + ++PDI   S  +VG  GET ++   TM
Sbjct: 168 IETVRRLTP----RVRARATYDRTLEFLRRSKELQPDIPTKSSLMVGL-GETLEEIYETM 222

Query: 352 DLVDKIGYAQAFSFKY 367
           D +           +Y
Sbjct: 223 DDLRANDVDILTIGQY 238


>gi|227824433|ref|ZP_03989265.1| conserved hypothetical protein [Acidaminococcus sp. D21]
 gi|226904932|gb|EEH90850.1| conserved hypothetical protein [Acidaminococcus sp. D21]
          Length = 379

 Score = 55.7 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 41/188 (21%), Positives = 67/188 (35%), Gaps = 1/188 (0%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C   C++C     +G + +     V    R++           G  V    G        
Sbjct: 17  CQHKCSYCDFISYQGQDGAARARYVKALIREIRSYDAPLPVSRGATVYVGGGTPSLLSLE 76

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
             + + ++L E   L   R  T      +       G   + +  L L +QS  D  L+ 
Sbjct: 77  ELAAIFHALKEKGYLHSPREVTFEANPGTVDEAYLRGLRALGVDRLSLGIQSLEDSELRL 136

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           M R HTA E R II  +        +S D I G+P +T     A++  +  +G +    +
Sbjct: 137 MGRTHTADEARHII-LLSKKVGFTRLSCDLIYGYPTQTAASVEASLTELMALGPSHISIY 195

Query: 366 KYSPRLGT 373
             S   GT
Sbjct: 196 GLSVEPGT 203


>gi|222085883|ref|YP_002544414.1| lipoic acid synthetase [Agrobacterium radiobacter K84]
 gi|254809147|sp|B9JEZ6|LIPA_AGRRK RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|221723331|gb|ACM26487.1| lipoic acid synthetase [Agrobacterium radiobacter K84]
          Length = 323

 Score = 55.7 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 80/220 (36%), Gaps = 11/220 (5%)

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
           R +  ++ +    E     + G   ++    F+ + E C + C FC V    G   +  +
Sbjct: 49  RSIVKEHKLVTVCEEAGCPNIGECWEKKHATFMIMGEICTRACAFCNV--ATGKPNALDM 106

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
           ++  + A+ + + G+  + +   +    R    DG    F  +++++     +  +   T
Sbjct: 107 AEPENIAKAVKEMGLSHVVITSVD----RDDLADGGAEHFEKVIWAIRAASPMTTIEILT 162

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
                    L +       +  +    +++     L ++      +   +++ R++ + P
Sbjct: 163 PDFLKKPGALERVVAAKPDVFNH---NMETVPGNYL-TVRPGARYFHSVRLLQRVKELDP 218

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
            +   S  +VG  GE  ++    MD +           +Y
Sbjct: 219 TMFTKSGIMVGL-GEERNEVLQLMDDLRTADVDFLTIGQY 257


>gi|157363704|ref|YP_001470471.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Thermotoga lettingae TMO]
 gi|157314308|gb|ABV33407.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Thermotoga lettingae TMO]
          Length = 367

 Score = 55.7 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/185 (18%), Positives = 75/185 (40%), Gaps = 16/185 (8%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C   C +C         +S +   +V++     ++ + EIT+  Q V       +     
Sbjct: 16  CKDRCNYC-------DFVSYTDFSLVED---YFESLLKEITIWSQYVGKVSLNSIYVGGG 65

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCL---IKAHGDLDVL-MPYLHLPVQSGSDR 301
           T SD+     E       +       +++  +    +   +L  L +  + + +Q+  D 
Sbjct: 66  TPSDIPLKYLEKTFDTISKSFNLCDPEITVEINPKFRYFYELRNLGVNRISMGLQAADDT 125

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
           +LK++NRRH+  E+R+      +   +I I  DFI+G P E++      + ++++     
Sbjct: 126 VLKAVNRRHSVSEFRETCREAMNYFENINI--DFIIGLPFESEQTIWNNLKVINEYNPKH 183

Query: 362 AFSFK 366
              + 
Sbjct: 184 VSVYI 188


>gi|327540073|gb|EGF26668.1| radical SAM domain protein [Rhodopirellula baltica WH47]
          Length = 672

 Score = 55.7 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/183 (18%), Positives = 62/183 (33%), Gaps = 19/183 (10%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEA-RKLIDNGVCEITLLGQNVNAWRGK 238
           + I  GC   C FC     +     R +  +VD A       G  E              
Sbjct: 342 IEIMRGCPHLCRFCQSTVIKRPLRIREVDTIVDAALESYRSTGFNE---------ISILS 392

Query: 239 GLDGEKCTFSDLLYSLSE--IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQ 296
               +   F++L+  L E  +   V +   +    D    L +  G        L L  +
Sbjct: 393 LSSSDYPHFAELVKRLHEVFVPLDVNISVPSLRVNDQLRTLPELLGSTRR--KSLTLAPE 450

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI--AISSDFIVGFPGETDDDFRATMDLV 354
              D + + + ++    +   +I+  R+   +   ++   F+ G PGE   D    +DL 
Sbjct: 451 VARDDMRQQIRKKI---KNSDLIEGCRAAFQNGFESVKLYFMCGLPGERPVDLDGIVDLA 507

Query: 355 DKI 357
           + I
Sbjct: 508 ETI 510


>gi|291385669|ref|XP_002709320.1| PREDICTED: lipoic acid synthetase [Oryctolagus cuniculus]
          Length = 374

 Score = 55.7 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/186 (18%), Positives = 66/186 (35%), Gaps = 15/186 (8%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLS--QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
           C + C FC V   R       L   +  + A+ + + G+  + L   +    R    DG 
Sbjct: 137 CTRGCRFCSVKTARNP---PPLDANEPYNTAKAIAEWGLDYVVLTSVD----RDDMPDGG 189

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPR-DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
               +  +  + E    + +   T   R D+      A   LDV    +    +      
Sbjct: 190 AEHIAKTVSYIKERNPKILVECLTPDFRGDLKAIEKVALSGLDVYAHNVETVPE----LQ 245

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
            K  + R    +  +++   + V+PD+   +  ++G  GE D+   ATM  + +      
Sbjct: 246 RKVRDPRANFDQSLRVLKHAKEVQPDVISKTSIMLGL-GENDEQVYATMKALREADVDCL 304

Query: 363 FSFKYS 368
              +Y 
Sbjct: 305 TLGQYM 310


>gi|157414099|ref|YP_001484965.1| Fe-S oxidoreductase [Prochlorococcus marinus str. MIT 9215]
 gi|157388674|gb|ABV51379.1| Fe-S oxidoreductase [Prochlorococcus marinus str. MIT 9215]
          Length = 540

 Score = 55.7 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 42/289 (14%), Positives = 84/289 (29%), Gaps = 31/289 (10%)

Query: 92  NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVV-VGPQTYYRLPELLERARFGKRVV 150
               K   ++ V++ G       E++    P   V+ VG         +   +  G+R  
Sbjct: 149 KRAQKYNKNIKVILGGGAVSVFYEQLGNLLPKGTVISVGEGENLLEKVIRGDSIEGERCY 208

Query: 151 DTDYSVEDKFER------------------LSIVDGGYNRKRGVTAFLTIQEGCDKFCTF 192
                  +K                     +      Y         +  + GC   C F
Sbjct: 209 FAGQKPRNKLIHEQPLGTVKTACNYQYIKSIWPEFNWYIEGGDYYVGVQTKRGCPHNCCF 268

Query: 193 CVVPYTRGIEISR-SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLL 251
           CV     G ++    +++V+ E ++L D GV             +    D +      LL
Sbjct: 269 CVYTVVEGKQVRINPVNEVIKEMKQLYDLGVRGFWFTDAQFIPAKKHIEDAKT-----LL 323

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
            ++ +               ++   L +   D    M Y  + + SGS  +++ M   + 
Sbjct: 324 RAIKDQGWDDINWAAYIRADNIDAELAQLMVDTG--MSYFEIGITSGSQELVRKMRLAYD 381

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGF--PGETDDDFRATMDLVDKIG 358
                     +  V+            F    ET +  R T+    ++ 
Sbjct: 382 LETVLNNCKML--VQSGFKNHVSVNYSFNVFDETPNTIRQTIAYHRELE 428


>gi|326200980|ref|ZP_08190852.1| cobalamin B12-binding domain protein [Clostridium papyrosolvens DSM
           2782]
 gi|325988548|gb|EGD49372.1| cobalamin B12-binding domain protein [Clostridium papyrosolvens DSM
           2782]
          Length = 571

 Score = 55.7 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 54/300 (18%), Positives = 105/300 (35%), Gaps = 31/300 (10%)

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR- 199
           E     K+   +D SV     R S+           TA +    GC   C +C  P +  
Sbjct: 180 EAVYNQKKETISDLSVLPFAARDSLYYLKNQGYSTRTASIYSSRGCRGNCIYCTAPSSSC 239

Query: 200 ---GIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
                   RS   + +E   L+   GV  +     N   +  K L+  +   + ++ +  
Sbjct: 240 LELEKWRCRSGESLYEEVEFLVKEFGVEYLYFCDVNFIGYGSKALERLEVFCNKIIENNI 299

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
           +I     +R  +  P      L+         +  L L ++SGS R+L    +  T    
Sbjct: 300 KINFHAEIRVDSIKP-----DLLNLLKKAG--LRDLLLGLESGSQRLLNLWRKGVTVERN 352

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY--AQAFSFKYSP---R 370
            + ++ ++S      +    I+  P  T  D   T+D + +            ++     
Sbjct: 353 LRAVEMVKS--HGFMLEPAMIMVSPSTTKQDLIDTIDFIVESKIYEDNVPMNMFNKMVLF 410

Query: 371 LGTPGSNMLEQ-----------VDENVKAER-LLCLQKKLREQQVSFNDACVGQIIEVLI 418
            G+    +L             + + VK E  L+ + K++  ++    D  V ++ EVL+
Sbjct: 411 RGSEAERLLRDEGKLDSPDMSVITKPVKNENDLVAICKEMLAREYKIFDDDVEKVWEVLV 470


>gi|152999756|ref|YP_001365437.1| putative radical SAM protein [Shewanella baltica OS185]
 gi|151364374|gb|ABS07374.1| conserved hypothetical radical SAM protein [Shewanella baltica
           OS185]
          Length = 309

 Score = 55.7 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 42/238 (17%), Positives = 75/238 (31%), Gaps = 34/238 (14%)

Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW--------RGKG 239
             CTFC V        S   + V+    + I+ G            A             
Sbjct: 43  GGCTFCNV-----ASFSHQTADVL-SITEQIEQGKSRYREAKPQAQADKFIAYFQAYTST 96

Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV--LMPYLHLPVQS 297
            D  +   +    ++    G +      + P  + D ++          +  +L L +Q+
Sbjct: 97  YDEYQVLMAKYDEAVK--DGEIVGLCVGTRPDCVPDNVLDLLASYQANGVDVWLELGLQT 154

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
             D  L+ +NR H    Y   + R R+    + + +  I+G P ET  D+  T+  V + 
Sbjct: 155 AKDETLRKINRGHDFACYCDTVSRARAR--GLKVCTHLILGLPDETHSDYMVTLAAVLQQ 212

Query: 358 GYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIE 415
           G             G+  +          KA R   L        +      VG++I 
Sbjct: 213 GVDGLKLHPLHVVEGSTMA----------KAWRSGRLPLL----SLEDYARSVGEMIR 256


>gi|26111062|gb|AAN83245.1|AE016770_45 Oxygen-independent coproporphyrinogen III oxidase [Escherichia coli
           CFT073]
          Length = 459

 Score = 55.7 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 44/269 (16%), Positives = 91/269 (33%), Gaps = 30/269 (11%)

Query: 157 EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS-------LSQ 209
           ED  E+  +       +R ++ ++ I   C K C FC        +  ++         +
Sbjct: 36  EDFGEQAFLQAVARYPERPLSLYVHIPF-CHKLCYFCGCNKIVTRQQHKADQYLDALEQE 94

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE-----IKGLVRLR 264
           +V  A       V ++   G       G      K   S L+  L E         + + 
Sbjct: 95  IVHRAPLFAGRHVSQLHWGG-------GTPTYLNKAQISRLMKLLRENFQFNADAEISIE 147

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
                PR++   ++            L + VQ  +  + + +NR         +++  R 
Sbjct: 148 V---DPREIELDVLDHLRAEG--FNRLSMGVQDFNKEVQRLVNREQDEEFIFALLNHARE 202

Query: 325 VRPDIAISS-DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQV 382
           +      ++ D I G P +T + F  T+  V ++   +   F Y+       +   ++  
Sbjct: 203 I--GFTSTNIDLIYGLPKQTPESFAFTLKRVAELNPDRLSVFNYAHLPTIFAAQRKIKDA 260

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVG 411
           D     ++L  LQ+ +     S     +G
Sbjct: 261 DLPSPQQKLDILQETIAFLTQSGYQ-FIG 288


>gi|238785722|ref|ZP_04629696.1| Lipoyl synthase [Yersinia bercovieri ATCC 43970]
 gi|238713362|gb|EEQ05400.1| Lipoyl synthase [Yersinia bercovieri ATCC 43970]
          Length = 321

 Score = 55.7 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 43/258 (16%), Positives = 87/258 (33%), Gaps = 19/258 (7%)

Query: 118 LRRSPIVNVVVGPQTYYRLPELLERAR-------FGKRVVDTDYSVEDKFERLSIVDGGY 170
           +   PI  VV   Q   R PE ++           G +       +    E  S  +   
Sbjct: 19  MALIPIKTVVTERQELLRKPEWMKIKLPADSSRIQGIKAAMRKNGLHSVCEEASCPNLSE 78

Query: 171 NRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQ 230
               G   F+ +   C + C FC V    G  ++   ++     + + D G+  + +   
Sbjct: 79  CFNHGTATFMILGAICTRRCPFCDV--AHGRPVAPDANEPEKLGQTIQDMGLRYVVITSV 136

Query: 231 NVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAH-GDLDVLMP 289
           +    R    DG    F+D + ++      +++       R   D  ++        +  
Sbjct: 137 D----RDDLRDGGAQHFADCISAIRAKNPTIKIETLVPDFRGRMDRALEILTATPPDVFN 192

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +    V     R+ + +          ++++R +   PDI   S  +VG  GET+ +   
Sbjct: 193 HNLENV----PRVYRQVRPGANYEWSLKLLERFKEAHPDIPTKSGLMVGL-GETNAEIVE 247

Query: 350 TMDLVDKIGYAQAFSFKY 367
            M  + + G       +Y
Sbjct: 248 VMRDLRRHGVTMLTLGQY 265


>gi|260886569|ref|ZP_05897832.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Selenomonas sputigena ATCC 35185]
 gi|260863712|gb|EEX78212.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Selenomonas sputigena ATCC 35185]
          Length = 354

 Score = 55.7 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/186 (18%), Positives = 63/186 (33%), Gaps = 22/186 (11%)

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           SR    +    R++   G   +                G     +     L  +   VR 
Sbjct: 2   SRYREAL---CREIAAQGCRCLQEGAVRTVYI------GGGTPTALAADDLLAVICSVRE 52

Query: 264 RYTTSHPRDMSDC---------LIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
            +  +   + +           L++   +    +  L   VQS SD +L ++ R HTA E
Sbjct: 53  SFHLTGAEEFTVEANPGTVDAKLLERLREAG--VNRLSFGVQSFSDALLAAIGRIHTARE 110

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
               +   +       +S D + G PG+T  D + ++     +G      +  +   GTP
Sbjct: 111 AEDAVRMAQKA--GFRVSLDLMYGLPGQTLSDLKDSVARAAALGIGHISVYGLAVEDGTP 168

Query: 375 GSNMLE 380
            + M E
Sbjct: 169 FARMEE 174


>gi|297190130|ref|ZP_06907528.1| radical SAM domain-containing protein [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|197721155|gb|EDY65063.1| radical SAM domain-containing protein [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 504

 Score = 55.7 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 43/279 (15%), Positives = 84/279 (30%), Gaps = 34/279 (12%)

Query: 114 GEEILRRSPIVNVVVGPQTYYRLPELLERARFG-----------------KRVVDTDYSV 156
           G+ + +    V+ VV  +    +  LL+ AR G                   ++ +  S 
Sbjct: 105 GDVLEQAEGAVDAVVRGEGETAIGPLLDAARDGGLSSVPGAVTLEGRGPAPTMLHSIDSP 164

Query: 157 EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARK 216
               + L      +  +    A +    GC   C+FC      G   S   +     A +
Sbjct: 165 RPARDLLRHRRRYFIGELDPCASIEFTRGCPWDCSFCSAWTFYG--RSYRKASPQVAAEE 222

Query: 217 LIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDC 276
           +          +  +V   R +  DG                  +R  Y      D+   
Sbjct: 223 MAGIRERN-VFIVDDVAFIRPEHGDGIAAELERRR---------IRKSYYLETRADVLLR 272

Query: 277 LIKAHGDLDVL-MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDF 335
             +       L + Y+ L +++     L    +R +  E    ++  R +   I ++ + 
Sbjct: 273 NREIFERWSRLGLKYMFLGMEAIDAEGLDLYRKRISPDENFHALETARKL--GITVAINL 330

Query: 336 IVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
           IV  P    + FR   +    +          +P  GT 
Sbjct: 331 IVD-PAWDRERFRIVREFALSVP-EIVHLTVMTPYPGTE 367


>gi|161486044|ref|NP_756671.2| coproporphyrinogen III oxidase [Escherichia coli CFT073]
 gi|227885398|ref|ZP_04003203.1| coproporphyrinogen dehydrogenase [Escherichia coli 83972]
 gi|300976534|ref|ZP_07173517.1| oxygen-independent coproporphyrinogen III oxidase [Escherichia coli
           MS 45-1]
 gi|301046672|ref|ZP_07193800.1| oxygen-independent coproporphyrinogen III oxidase [Escherichia coli
           MS 185-1]
 gi|40889237|pdb|1OLT|A Chain A, Coproporphyrinogen Iii Oxidase (Hemn) From Escherichia
           Coli Is A Radical Sam Enzyme.
 gi|227837656|gb|EEJ48122.1| coproporphyrinogen dehydrogenase [Escherichia coli 83972]
 gi|300301373|gb|EFJ57758.1| oxygen-independent coproporphyrinogen III oxidase [Escherichia coli
           MS 185-1]
 gi|300410106|gb|EFJ93644.1| oxygen-independent coproporphyrinogen III oxidase [Escherichia coli
           MS 45-1]
 gi|307556009|gb|ADN48784.1| oxygen-independent coproporphyrinogen III oxidase [Escherichia coli
           ABU 83972]
 gi|315292782|gb|EFU52134.1| oxygen-independent coproporphyrinogen III oxidase [Escherichia coli
           MS 153-1]
          Length = 457

 Score = 55.7 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 44/269 (16%), Positives = 91/269 (33%), Gaps = 30/269 (11%)

Query: 157 EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS-------LSQ 209
           ED  E+  +       +R ++ ++ I   C K C FC        +  ++         +
Sbjct: 34  EDFGEQAFLQAVARYPERPLSLYVHIPF-CHKLCYFCGCNKIVTRQQHKADQYLDALEQE 92

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE-----IKGLVRLR 264
           +V  A       V ++   G       G      K   S L+  L E         + + 
Sbjct: 93  IVHRAPLFAGRHVSQLHWGG-------GTPTYLNKAQISRLMKLLRENFQFNADAEISIE 145

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
                PR++   ++            L + VQ  +  + + +NR         +++  R 
Sbjct: 146 V---DPREIELDVLDHLRAEG--FNRLSMGVQDFNKEVQRLVNREQDEEFIFALLNHARE 200

Query: 325 VRPDIAISS-DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQV 382
           +      ++ D I G P +T + F  T+  V ++   +   F Y+       +   ++  
Sbjct: 201 I--GFTSTNIDLIYGLPKQTPESFAFTLKRVAELNPDRLSVFNYAHLPTIFAAQRKIKDA 258

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVG 411
           D     ++L  LQ+ +     S     +G
Sbjct: 259 DLPSPQQKLDILQETIAFLTQSGYQ-FIG 286


>gi|158313942|ref|YP_001506450.1| coproporphyrinogen III oxidase [Frankia sp. EAN1pec]
 gi|158109347|gb|ABW11544.1| putative oxygen-independent coproporphyrinogen III oxidase [Frankia
           sp. EAN1pec]
          Length = 409

 Score = 55.7 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 35/214 (16%), Positives = 75/214 (35%), Gaps = 13/214 (6%)

Query: 173 KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEIT-LLGQN 231
            R    ++ +   C   C +C        E+              +         +LG+ 
Sbjct: 27  TRPFGVYVHVPY-CAARCGYCDFNTYTPAELGAGGQGGAASFVDSVATEARLARSVLGER 85

Query: 232 VNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL---- 287
                   + G   T       L+++  ++   +  +   +++        D + L    
Sbjct: 86  DLTVSTVFVGGGTPTL-LPAADLAKVLRVLDDTFGLAGDAEVTTEANPESVDRETLEQLR 144

Query: 288 ---MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA-ISSDFIVGFPGET 343
                 +   +QS    +L +++RRHT     +++   RS       +S D I G PGE+
Sbjct: 145 ASGYTRISFGMQSARPHVLAALDRRHTPGRVPEVVGWARSA--GFRQLSLDLIYGAPGES 202

Query: 344 DDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
           + D+ A++D V ++      ++  +   GT  S 
Sbjct: 203 ESDWAASLDTVIELAPDHVSAYALTVEEGTKLSR 236


>gi|239904934|ref|YP_002951672.1| cobalamin vitamin B12-binding domain/radical SAM domain protein
           [Desulfovibrio magneticus RS-1]
 gi|239794797|dbj|BAH73786.1| cobalamin vitamin B12-binding domain/radical SAM domain protein
           [Desulfovibrio magneticus RS-1]
          Length = 532

 Score = 55.7 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 48/240 (20%), Positives = 84/240 (35%), Gaps = 30/240 (12%)

Query: 132 TYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLT-IQEGCDKFC 190
            +    + +     G+ V     ++     RL   DG     R VTA+ T    GC   C
Sbjct: 176 DFSGQDQFVMAPERGRIVPLDAEALRLALPRLPHWDG-----RLVTAYRTMTDRGCPHGC 230

Query: 191 TFCVVP----YTRGI----EISRSLSQVVDEARKLIDNG--VCEITLLGQNVNAWRGKGL 240
            +C VP      RG        R +  V+ E R +I     +  I L      + R    
Sbjct: 231 AYCNVPTVKALFRGGGVPYFRHRGVPHVMAELRGIIARYPFIEAIQLFDDTFFSRR---- 286

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLR-YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
                    L    +  K  + L  Y  + P  +    +    +  +   Y+ + +Q+GS
Sbjct: 287 ------LDWLREFAAAYKADIGLPLYCQASPTTLDAEKLDVLIEAGLC--YVEMGIQTGS 338

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS-DFIVGFPGETDDDFRATMDLVDKIG 358
            R+ +   R           + + S R  +       I+  P ET++D  AT+ L+ ++ 
Sbjct: 339 PRMREIFRRPEDDDAVLAGANLLHSRRDKLLPPDYHVIIDAPWETEEDLLATVRLLARLP 398


>gi|229820237|ref|YP_002881763.1| oxygen-independent coproporphyrinogen III oxidase [Beutenbergia
           cavernae DSM 12333]
 gi|229566150|gb|ACQ80001.1| oxygen-independent coproporphyrinogen III oxidase [Beutenbergia
           cavernae DSM 12333]
          Length = 405

 Score = 55.7 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 45/236 (19%), Positives = 82/236 (34%), Gaps = 17/236 (7%)

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE----- 202
           ++ D D    D     S++ G   R  GV   +     C   C +C        E     
Sbjct: 3   QLPDGDPPPSDGSLPASVLPGADERAFGVYLHVPF---CRVRCGYCDFNTYTASELGGGA 59

Query: 203 -----ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257
                 + +  ++   AR L  +G+ E  +  + V    G          + L+ ++ + 
Sbjct: 60  SQAAYAATAQREIALAARVLASSGLPERRV--ETVFVGGGTPTLLPPGDLAGLVRAVDDA 117

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
            GL      T+     S          D     +   +QS    +L +++R H       
Sbjct: 118 WGLAPGAEVTTEANPDSVTPESLAALADAGFTRVSFGMQSAVPHVLATLDRTHDPARLPA 177

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
           ++   R     +A+S D I G PGET DD+R +++    +      ++      GT
Sbjct: 178 VVAWARDA--GLAVSLDLIYGTPGETLDDWRVSLEKAVALDPDHVSAYALVVEPGT 231


>gi|270308877|ref|YP_003330935.1| Radical SAM domain protein [Dehalococcoides sp. VS]
 gi|270154769|gb|ACZ62607.1| Radical SAM domain protein [Dehalococcoides sp. VS]
          Length = 627

 Score = 55.7 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 44/235 (18%), Positives = 81/235 (34%), Gaps = 27/235 (11%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGK 238
           + I  GC + C FC           R  ++VV     ++DN G  EI+LL          
Sbjct: 275 VEISRGCSRGCRFCSAGIIYRPVRVRPATEVVSAVESIMDNCGYDEISLLS-----LSCS 329

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
              G +     L    +     + L   +      S  L+            L    ++ 
Sbjct: 330 DYPGIENLVKTLAEKYA--DKHLALSLPSLRLTPDSVGLVNVLAGGRK--SGLTFAPEAA 385

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPD--IAISSDFIVGFPGETDDDFRATMDLVDK 356
           S+R+ + +N+  +     ++ D  R+       +    F++G P ETD+D  A   +  +
Sbjct: 386 SERLQRVINKLTSEE---ELCDTARTAFESGWTSFKMYFMIGLPTETDEDAAAICQMAGR 442

Query: 357 I-----------GYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLRE 400
           +              +     Y P+  TP      Q+DE     R   +++ L+ 
Sbjct: 443 VNALSRGAPGRRPQIRLSLASYVPKAHTP-FQWEAQLDEESLYRRADIVRQGLKR 496


>gi|152981678|ref|YP_001352857.1| Fe-S oxidoreductase [Janthinobacterium sp. Marseille]
 gi|151281755|gb|ABR90165.1| Fe-S oxidoreductase [Janthinobacterium sp. Marseille]
          Length = 723

 Score = 55.7 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 43/256 (16%), Positives = 81/256 (31%), Gaps = 37/256 (14%)

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRG---VTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRS 206
           + D   +  + R      G  R      +   + I  GC   CTFC +    G  I SRS
Sbjct: 324 EMDGVYDMNYARAPHPSYGKARIPAWEMIRFSVNIMRGCFGGCTFCSITEHEGRIIQSRS 383

Query: 207 LSQVVDEARKLIDN--GVCEIT--LLGQNVNAWR----------------------GKGL 240
              ++ E   + D   G       L G   N +R                         L
Sbjct: 384 EPSILREIELIRDKVKGFTGTISDLGGPTANMYRLACKDKRIEESCRRLSCVYPSICSNL 443

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL--DVLMPYLHLPVQSG 298
             +      L      I G+ ++  ++    D++    +   +L    +   L +  +  
Sbjct: 444 GTDHSKLIQLYRKARAIPGIKKILVSSGLRYDLAVRSPEYVKELVSHHVGGLLKIAPEHS 503

Query: 299 SDRILKSMNRRHTAYE--YRQIIDRI-RSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
            +  L  M +        ++++ ++  +    +  +   FI   PG TD+D       + 
Sbjct: 504 EEGPLSKMMKPGMGAYDKFKELFEKYSKEAGKEQYLIPYFIAAHPGTTDEDMLNLALWLK 563

Query: 356 K--IGYAQAFSFKYSP 369
           K      Q  +F  +P
Sbjct: 564 KNNFRLDQVQTFMPTP 579


>gi|91213413|ref|YP_543399.1| coproporphyrinogen III oxidase [Escherichia coli UTI89]
 gi|117626140|ref|YP_859463.1| coproporphyrinogen III oxidase [Escherichia coli APEC O1]
 gi|237702897|ref|ZP_04533378.1| oxygen-independent coproporphyrinogen III oxidase [Escherichia sp.
           3_2_53FAA]
 gi|331649711|ref|ZP_08350791.1| oxygen-independent coproporphyrinogen III oxidase [Escherichia coli
           M605]
 gi|91074987|gb|ABE09868.1| oxygen-independent coproporphyrinogen III oxidase [Escherichia coli
           UTI89]
 gi|115515264|gb|ABJ03339.1| oxygen-independent coproporphyrinogen III oxidase [Escherichia coli
           APEC O1]
 gi|226902834|gb|EEH89093.1| oxygen-independent coproporphyrinogen III oxidase [Escherichia sp.
           3_2_53FAA]
 gi|331041344|gb|EGI13494.1| oxygen-independent coproporphyrinogen III oxidase [Escherichia coli
           M605]
          Length = 459

 Score = 55.7 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 44/269 (16%), Positives = 91/269 (33%), Gaps = 30/269 (11%)

Query: 157 EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS-------LSQ 209
           ED  E+  +       +R ++ ++ I   C K C FC        +  ++         +
Sbjct: 36  EDFGEQAFLQAVARYPERPLSLYVHIPF-CHKLCYFCGCNKIVTRQQHKADQYLDALEQE 94

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE-----IKGLVRLR 264
           +V  A       V ++   G       G      K   S L+  L E         + + 
Sbjct: 95  IVHRAPLFAGRHVSQLHWGG-------GTPTYLNKAQISRLMKLLRENFQFNADAEISIE 147

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
                PR++   ++            L + VQ  +  + + +NR         +++  R 
Sbjct: 148 V---DPREIELDVLDHLRAEG--FNRLSMGVQDFNKEVQRLVNREQDEEFIFALLNHARE 202

Query: 325 VRPDIAISS-DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQV 382
           +      ++ D I G P +T + F  T+  V ++   +   F Y+       +   ++  
Sbjct: 203 I--GFTSTNIDLIYGLPKQTPESFAFTLKRVAELNPDRLSVFNYAHLPTIFAAQRKIKDA 260

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVG 411
           D     ++L  LQ+ +     S     +G
Sbjct: 261 DLPSPQQKLDILQETIAFLTQSGYQ-FIG 288


>gi|6466832|gb|AAF13050.1|AF157642_2 putative oxygen-independent coproporphyrinogen III oxidase
           [Desulfitobacterium dehalogenans]
          Length = 374

 Score = 55.7 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 48/111 (43%), Gaps = 4/111 (3%)

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
           + L VQS +D +L+ + R H   E +  +   R       ++ D + G PG+   D+R T
Sbjct: 79  VSLGVQSLNDDLLRQIGRIHRXEEVKDAVRLXREAGFK-NLNLDLMFGLPGQNLADWRDT 137

Query: 351 MDLVDKIGYAQAFSFKYSPRLGTPGS---NMLEQVDENVKAERLLCLQKKL 398
           ++   +I       +      GTP +    ++  + ++     L  L +++
Sbjct: 138 LEETLRIRPEHISVYGLMVEEGTPIALNKELIANLPDDDTQAELYHLTREI 188


>gi|118579356|ref|YP_900606.1| radical SAM domain-containing protein [Pelobacter propionicus DSM
           2379]
 gi|118502066|gb|ABK98548.1| Radical SAM domain protein [Pelobacter propionicus DSM 2379]
          Length = 422

 Score = 55.7 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 58/339 (17%), Positives = 110/339 (32%), Gaps = 62/339 (18%)

Query: 48  FFSQGYERVNSMDDADLIVLN---TCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVV 104
           F  +  E ++  + ADL+ ++   TC                 R  + + I     + V+
Sbjct: 41  FTDEHVEPIDFDEHADLVAISCMLTC--------------QMPRGWEIADIYRAKGIPVI 86

Query: 105 VAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG--KRVVDTDYSVEDKFER 162
             G       +E +      + V   +   R  ++L     G  ++V D    + D    
Sbjct: 87  FGGIGTMLHAQETMT---HADSVFLGEAEGRFHQVLTDLNNGGMQKVYDYQNDLPDIGLV 143

Query: 163 LSIVDGGYNRK----RGVTAFLTI--QEGCDKFCTFCVVPYTRG-IEISRSLSQVVDEAR 215
                   NR+    RG+     +    GC   C  C  P+  G     RSL  V+ E  
Sbjct: 144 GPARREILNRELYNYRGMQMVDLVHASRGCRFTCFPCCTPFLGGTRFRPRSLDDVIAEVA 203

Query: 216 KLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSD 275
            + +N +  +     N  +   +          DL  +L  +K          HP   +D
Sbjct: 204 SIENNRLFFV----DNSMSQDDQWEK-------DLFKALIPLKKKW-----VCHPIKDND 247

Query: 276 CLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDF 335
            ++    +      Y     Q+  D          T+   R  + R++     I +    
Sbjct: 248 EILDLAAEAGCWYVY-----QAIFD----------TSDHIRNRVKRLQER--GIGVEGTI 290

Query: 336 IVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
           I+G   + ++  +  +D + +I    A     +P   TP
Sbjct: 291 ILGTDEQDEEYIKRLVDFLLEINLDLAEFTILTPFPHTP 329


>gi|319790666|ref|YP_004152299.1| oxygen-independent coproporphyrinogen III oxidase [Thermovibrio
           ammonificans HB-1]
 gi|317115168|gb|ADU97658.1| oxygen-independent coproporphyrinogen III oxidase [Thermovibrio
           ammonificans HB-1]
          Length = 376

 Score = 55.7 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 83/223 (37%), Gaps = 21/223 (9%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C   C +C      G    R+    V      +     E+    Q           G   
Sbjct: 15  CRSKCFYCDFYSEAG----RTKDGYVKLLLTELSLLQPEL----QQFPTVY---FGGGTP 63

Query: 246 TFSD--LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
           +  +     +L    G         +P D +   ++A  +L   +  + + VQS SD  L
Sbjct: 64  SLMEPSFFETLLSRVGQFSEVTVEFNPEDATPQKLRALRELG--VNRVSIGVQSLSDTTL 121

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           K++ RRHTA +  + ++    V  ++++  D I G PG+  ++F   ++ +  +      
Sbjct: 122 KALRRRHTARQGLKAVEEALKVFNNVSV--DLIYGVPGQRPEEFLRELETLLSLPVKHVS 179

Query: 364 SFKYSPRLGTPGSNMLE----QVDENVKAERLLCLQKKLREQQ 402
            +  +P   T    ++E    ++    + E    L  KL E++
Sbjct: 180 LYALTPYSETQLGRLVELGKVELPPEEQVEECYRLGAKLLEEK 222


>gi|307943383|ref|ZP_07658727.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Roseibium sp. TrichSKD4]
 gi|307773013|gb|EFO32230.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Roseibium sp. TrichSKD4]
          Length = 388

 Score = 55.7 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 38/202 (18%), Positives = 70/202 (34%), Gaps = 18/202 (8%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLL-GQNVNAWRGKGLDGEK 244
           C   C +C           +++ Q    A            L  G+ V +    G     
Sbjct: 21  CAAKCPYC---DFNSHVRHQAVDQ-DRFAAAFERELTHFADLTKGKTVQSIFFGGGTPSL 76

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY-------LHLPVQS 297
                +   LS++ GL    ++     ++S     +  + +    Y       + L VQS
Sbjct: 77  MKPQTVERILSKVSGL----WSIDDEVEISLEANPSSVESERFRGYRAAGVNRVSLGVQS 132

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
             DR LK + R H      + I+  RS  P ++   D I   P ++ +D+RA +     +
Sbjct: 133 LHDRDLKLLGRLHDVKTALKAIETARSTFPRLSF--DLIYARPDQSLEDWRAELQQALDL 190

Query: 358 GYAQAFSFKYSPRLGTPGSNML 379
                  ++ +   GTP   + 
Sbjct: 191 AADHLSLYQLTIEPGTPFYTLY 212


>gi|269965793|ref|ZP_06179889.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
 gi|269829591|gb|EEZ83829.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
          Length = 319

 Score = 55.7 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 44/231 (19%), Positives = 74/231 (32%), Gaps = 21/231 (9%)

Query: 181 TIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL 240
           TI  G    CTFC V      E+   +  + ++ +            L            
Sbjct: 39  TIGRG---GCTFCNVASFADEEV--QIKSIHEQLKDRAGEIHRAKKYLA---YFQAYTST 90

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL-HLPVQSGS 299
             E     ++     +   +V L   T         L    G +         L +Q+ +
Sbjct: 91  YAEVQVLKNMYEEALKAADMVGLCVGTRPDCVPDAVLDLLSGYVQQGYEIWLELGLQTAN 150

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
           +  LK +NR H    Y +I  R R++   I + +  IVG P ET  +   T+  V  +G 
Sbjct: 151 NDTLKRINRGHDFECYAEITKRARTL--GIKVCTHLIVGLPKETRAENIETLQKVLTVGT 208

Query: 360 AQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACV 410
                       G+  +          KA R   L+    E+ V+     +
Sbjct: 209 DGIKLHGLHIVEGSTMA----------KAWRAGKLEAPELEEYVAIASEMI 249


>gi|262279018|ref|ZP_06056803.1| lipoate synthase [Acinetobacter calcoaceticus RUH2202]
 gi|262259369|gb|EEY78102.1| lipoate synthase [Acinetobacter calcoaceticus RUH2202]
          Length = 328

 Score = 55.7 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/207 (15%), Positives = 66/207 (31%), Gaps = 10/207 (4%)

Query: 161 ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN 220
           E  +  +       G   F+ + + C + C FC V    G        +    A  + + 
Sbjct: 66  EEAACPNLPECFGGGTATFMIMGDICTRRCPFCDV--AHGRPKPLDEDEPKHLAETVANL 123

Query: 221 GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKA 280
            +  + +   +    R    DG    F   +  + +      +        D    L  A
Sbjct: 124 NLKYVVITSVD----RDDLHDGGAAHFVKCIEEIRKHCPETLIEILVP---DFRGRLETA 176

Query: 281 HGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFP 340
              L +  P +         R+ K+M          +++ R ++  PDI   S  +VG  
Sbjct: 177 LSTLSLSPPDVFNHNIETVPRLYKAMRPGSDYQHSLELLKRFKAYCPDIKTKSGLMVGL- 235

Query: 341 GETDDDFRATMDLVDKIGYAQAFSFKY 367
           GE + +  A ++ +           +Y
Sbjct: 236 GEIEAEVLALLNDLKDYQVDLITIGQY 262


>gi|255972986|ref|ZP_05423572.1| coproporphyrinogen III oxidase [Enterococcus faecalis T1]
 gi|256762300|ref|ZP_05502880.1| coproporphyrinogen III oxidase [Enterococcus faecalis T3]
 gi|256965300|ref|ZP_05569471.1| coproporphyrinogen III oxidase [Enterococcus faecalis HIP11704]
 gi|257086650|ref|ZP_05581011.1| coproporphyrinogen III oxidase [Enterococcus faecalis D6]
 gi|257415922|ref|ZP_05592916.1| coproporphyrinogen III oxidase [Enterococcus faecalis AR01/DG]
 gi|257422809|ref|ZP_05599799.1| coproporphyrinogen III oxidase [Enterococcus faecalis X98]
 gi|307273405|ref|ZP_07554650.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Enterococcus faecalis TX0855]
 gi|255964004|gb|EET96480.1| coproporphyrinogen III oxidase [Enterococcus faecalis T1]
 gi|256683551|gb|EEU23246.1| coproporphyrinogen III oxidase [Enterococcus faecalis T3]
 gi|256955796|gb|EEU72428.1| coproporphyrinogen III oxidase [Enterococcus faecalis HIP11704]
 gi|256994680|gb|EEU81982.1| coproporphyrinogen III oxidase [Enterococcus faecalis D6]
 gi|257157750|gb|EEU87710.1| coproporphyrinogen III oxidase [Enterococcus faecalis ARO1/DG]
 gi|257164633|gb|EEU94593.1| coproporphyrinogen III oxidase [Enterococcus faecalis X98]
 gi|306509932|gb|EFM78957.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Enterococcus faecalis TX0855]
 gi|315027456|gb|EFT39388.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Enterococcus faecalis TX2137]
 gi|315150712|gb|EFT94728.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Enterococcus faecalis TX0012]
 gi|315153265|gb|EFT97281.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Enterococcus faecalis TX0031]
 gi|315155957|gb|EFT99973.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Enterococcus faecalis TX0043]
 gi|315157875|gb|EFU01892.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Enterococcus faecalis TX0312]
          Length = 382

 Score = 55.7 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 49/254 (19%), Positives = 98/254 (38%), Gaps = 28/254 (11%)

Query: 177 TAFLTIQEGCDKFCTFCVV--PYTRGIEISRSLSQVVDEARKLI----DNGVCEITLLGQ 230
           +A++ I   C+  C +C     +  G  +   +  ++ E +       +  +  I + G 
Sbjct: 5   SAYIHIPF-CEHICYYCDFNKVFLEGQPVDEYIQSLLKEIQLTQALYPEQEMKTIYIGGG 63

Query: 231 NVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT-SHPRDMSDCLIKAHGDLDVLMP 289
              +   K LD        +   L       R  +T  ++P D++   ++   +    + 
Sbjct: 64  TPTSLSAKQLD---VLLKGVREQL---TFDDRNEFTVEANPGDLTQEKLQVMKNYG--VN 115

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI-RSVRPDIAISSDFIVGFPGETDDDFR 348
            L + VQ+  DR+LK + R+HTA +  + +  + +    +++I  D I   PG+T + FR
Sbjct: 116 RLSMGVQTFDDRLLKKIGRKHTAADVYETMKFLEKENFTNVSI--DLIYALPGQTLESFR 173

Query: 349 ATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE----QVDENVKA-----ERLLCLQKKLR 399
            T+     +       +       T   N +     Q+ E         E +  ++KK R
Sbjct: 174 DTLTRALALDLPHYSLYSLILENKTMFMNWVRQGRLQLPEEEIEAQMFDETIEAMEKKGR 233

Query: 400 EQQVSFNDACVGQI 413
            Q    N A  G+ 
Sbjct: 234 HQYEVSNFALTGKE 247


>gi|257126826|ref|YP_003164940.1| oxygen-independent coproporphyrinogen III oxidase [Leptotrichia
           buccalis C-1013-b]
 gi|257050765|gb|ACV39949.1| oxygen-independent coproporphyrinogen III oxidase [Leptotrichia
           buccalis C-1013-b]
          Length = 436

 Score = 55.7 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/230 (15%), Positives = 87/230 (37%), Gaps = 21/230 (9%)

Query: 186 CDKFCTFCVVPYTRGIEISRS--LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
           CDK C +C       +E      +  ++ E R         I   G   +          
Sbjct: 19  CDKKCEYCDFCTFVRMEKEYRKYIDYLIREIRMYPKFTYDTIYFGGGTPSVL-------- 70

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTT-SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
                 +   + E++       T   +P DM+   +K   ++ +    L + +QS  + +
Sbjct: 71  --PVEMIREIMQELEWTENTEITLELNPTDMTLEKLKEIREIGI--NRLSIGIQSFQNHV 126

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           LK + R+H++ +   +    R    +  I+ D + G P ++ +D +  ++++ ++     
Sbjct: 127 LKFIGRQHSSDDAVNVYRMAREAGFE-NITVDLMFGIPNQSIEDLQRDLNILKELKPENV 185

Query: 363 FSFKYSPRLGTPGSNMLEQ-----VDENVKAERLLCLQKKLREQQVSFND 407
             +      GT   + L++     +D++V+A+    + +   E      +
Sbjct: 186 SIYSLIWEEGTVFWSKLQKGILSEIDQDVEAQMYEMIIEFFNENGYCHYE 235


>gi|254445107|ref|ZP_05058583.1| oxygen-independent coproporphyrinogen III oxidase [Verrucomicrobiae
           bacterium DG1235]
 gi|198259415|gb|EDY83723.1| oxygen-independent coproporphyrinogen III oxidase [Verrucomicrobiae
           bacterium DG1235]
          Length = 465

 Score = 55.7 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 41/240 (17%), Positives = 83/240 (34%), Gaps = 28/240 (11%)

Query: 186 CDKFCTFC---VVPYTRGIEISRSLSQVVDEARKLID---NGVCEITLLGQNVNAWRGKG 239
           C   C FC    +  T      R L  +  E R+  +   +G   + L            
Sbjct: 71  CRSLCWFCGCAKIISTNTALADRYLDYLAIEVRRYAELIRSGRKVVQL------------ 118

Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCL-------IKAHGDLDVLMPYLH 292
             G           +  + G++R  +      ++S  L        +     D+ +    
Sbjct: 119 HFGGGTPNFLSPSQIKRMAGILRGSFEIDESAEISVELDPRTLSRAQVLAFTDLGVNRAS 178

Query: 293 LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352
           + VQ  + ++ ++++R        + I  +R      +I+ D I G P +T+D F+ T++
Sbjct: 179 IGVQDVNTKVQEAIHRIQPTETNEKTISWLREAGIG-SINVDLIYGLPHQTEDGFKETLE 237

Query: 353 LVDKIGYAQAFSFKYSPRL-GTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVG 411
            V      +   F Y+      P   +LE+        ++  L + + +   S     VG
Sbjct: 238 EVLAYDPERLAVFSYAHVPWSKPAQKILERSPLPSADSKIEILIQTVEKLTSSGY-THVG 296


>gi|261420411|ref|YP_003254093.1| lipoyl synthase [Geobacillus sp. Y412MC61]
 gi|297528886|ref|YP_003670161.1| lipoic acid synthetase [Geobacillus sp. C56-T3]
 gi|319768077|ref|YP_004133578.1| lipoic acid synthetase [Geobacillus sp. Y412MC52]
 gi|172045729|sp|Q5KVM7|LIPA_GEOKA RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|261376868|gb|ACX79611.1| lipoic acid synthetase [Geobacillus sp. Y412MC61]
 gi|297252138|gb|ADI25584.1| lipoic acid synthetase [Geobacillus sp. C56-T3]
 gi|317112943|gb|ADU95435.1| lipoic acid synthetase [Geobacillus sp. Y412MC52]
          Length = 298

 Score = 55.7 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/214 (15%), Positives = 74/214 (34%), Gaps = 13/214 (6%)

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           ++V ++ +  +I +    R+     F+ +   C + C FC V      E+     +    
Sbjct: 37  HTVCEEAKCPNIHECWAVRR--TATFMILGSVCTRACRFCAVKTGLPTEL--DWQEPERV 92

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
           A  +    +  + +        R    DG    F++ + ++        +    S    +
Sbjct: 93  AESVRIMNLKHVVVTAV----ARDDLKDGGAAVFAETVRAIRRKNPFTTIEVLPSDMGGV 148

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
            + L         ++ +    V+  +      +  R T     + + R + ++PDI   S
Sbjct: 149 YENLKILMDARPDILNHNIETVRRLTP----RVRARATYERSLEFLRRAKELQPDIPTKS 204

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
             +VG  GET ++    MD +           +Y
Sbjct: 205 SIMVGL-GETKEEIIEAMDDLRANHVDILTIGQY 237


>gi|15800342|ref|NP_286354.1| lipoyl synthase [Escherichia coli O157:H7 EDL933]
 gi|25319596|pir||F85562 lipoate synthesis, sulfur insertion [imported] - Escherichia coli
           (strain O157:H7, substrain EDL933)
 gi|12513529|gb|AAG54962.1|AE005242_6 lipoate synthesis, sulfur insertion [Escherichia coli O157:H7 str.
           EDL933]
          Length = 321

 Score = 55.7 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/183 (17%), Positives = 67/183 (36%), Gaps = 12/183 (6%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V    G  ++   ++ V  A+ + D  +  + +   +    R    DG   
Sbjct: 94  CTRRCPFCDV--AHGRPVAPDANEPVKLAQTIADMALRYVVITSVD----RDDLRDGGAQ 147

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAH-GDLDVLMPYLHLPVQSGSDRILK 304
            F+D + ++ E    +++       R   D  +         +  +    V     RI +
Sbjct: 148 HFADCITAIREKSPQIKIETLVPDFRGRMDRALDILTATPPDVFNHNLENV----PRIYR 203

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
            +          ++++R +   P+I   S  +VG  GET++     M  + + G      
Sbjct: 204 QVRPGABYNWSLKLLERFKEAHPEIPTKSGLMVGL-GETNEXIIEVMRDLRRHGVTMLTL 262

Query: 365 FKY 367
            +Y
Sbjct: 263 GQY 265


>gi|23005351|ref|ZP_00048214.1| COG0320: Lipoate synthase [Magnetospirillum magnetotacticum MS-1]
          Length = 280

 Score = 55.7 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 37/216 (17%), Positives = 69/216 (31%), Gaps = 18/216 (8%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC +    G        +    A  +   G+   T+ G      R    DG   
Sbjct: 16  CTRRCDFCQI--DTGKPADFDADEPRRVAESVQAMGLRYSTITGV----ARDDLPDGGAW 69

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
            +++ +  +  +     +         + + L + +     ++ +    V     RI K 
Sbjct: 70  LYAETVRQIHALNPGTGVELLIPDFNAIPELLDEVNDSRPEVLAHNLETV----PRIFKQ 125

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           +           ++ R R     +   S+ I+G  GET D+ +  +  +   G       
Sbjct: 126 IRPGFRYERSLSVLTRAREA--GLVTKSNIILGM-GETIDEAKEALQDLHDAGCDLVTIT 182

Query: 366 KYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQ 401
           +Y  R     S     VD  VK E  + L     E 
Sbjct: 183 QYL-RP----SLRHHPVDRWVKPEEFVELSDAAEEI 213


>gi|311114773|ref|YP_003985994.1| putative coproporphyrinogen dehydrogenase [Gardnerella vaginalis
           ATCC 14019]
 gi|310946267|gb|ADP38971.1| possible coproporphyrinogen dehydrogenase [Gardnerella vaginalis
           ATCC 14019]
          Length = 238

 Score = 55.7 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 35/199 (17%), Positives = 69/199 (34%), Gaps = 14/199 (7%)

Query: 186 CDKFCTFC----VVPYTRGIEISRS-LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL 240
           C + C +C          G   SR   + V     +L+        +      +    G 
Sbjct: 30  CLRRCGYCDFNTYTARDLGEGASREGYADVAILEMRLVKKWQEFHGIFEPKAQSVFFGGG 89

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDC-----LIKAHGDLDVLMPYLHLPV 295
                   DL+  L EI+ L  +        + +        I+   +       +   +
Sbjct: 90  TPTVLKAQDLVRILQEIRNLWGIMPGAEITTEANPDTADESYIETLAEGG--FTRISFGM 147

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
           QS    +LK+++R HT     + +    +    +  S D I G PGE+ DD+R ++++  
Sbjct: 148 QSAVPHVLKTLDRTHTPENVERGVKTADAC--GLRSSVDLIYGAPGESLDDWRKSVEMAL 205

Query: 356 KIGYAQAFSFKYSPRLGTP 374
            +G     ++  +    T 
Sbjct: 206 SLGVNHVSAYALTVEPRTK 224


>gi|307243814|ref|ZP_07525945.1| radical SAM domain protein [Peptostreptococcus stomatis DSM 17678]
 gi|306492817|gb|EFM64839.1| radical SAM domain protein [Peptostreptococcus stomatis DSM 17678]
          Length = 519

 Score = 55.7 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 40/263 (15%), Positives = 91/263 (34%), Gaps = 32/263 (12%)

Query: 126 VVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKF---ERLSIVDGGYNRKRGVTA---- 178
           ++ G +    +  L+++ +  + +  +D+  E+     E+L ++    NR+R        
Sbjct: 128 ILTGIRPVKLIHSLMDQGKSDQEI--SDFMKEEYLISQEKLDLIMDIANRERPFIYPTSE 185

Query: 179 -----FLTIQEGCDKFCTFCVVPY----TRGIEISRSLSQVVDEAR------KLIDNGVC 223
                +L+I   C   C +C  P       G      +  ++ EAR      +     + 
Sbjct: 186 DKISLYLSIPF-CPTRCLYCSFPSHSLDKYGQHRESYVDTLLKEARGIESIIEDFGKTIE 244

Query: 224 EITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGD 283
            I + G    +   K +D            + ++  +         P  ++   +K    
Sbjct: 245 SIYIGGGTPTSLEAKDMDYLITNLF----KILDLTKIKEFTVEAGRPDTITRDKLKVLKK 300

Query: 284 LDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGET 343
               +  + +  Q+ +   L  + R+H+  +        R++  D  I+ D I+G PGE+
Sbjct: 301 HG--VTRISINPQTMNQVSLDRIGRKHSVEDIVDCYHMARNLGFD-NINMDLILGLPGES 357

Query: 344 DDDFRATMDLVDKIGYAQAFSFK 366
                 TM  +  +         
Sbjct: 358 PAMVEETMKKIIDLDPESVTVHT 380


>gi|269959437|ref|ZP_06173820.1| oxygen-independent coproporphyrinogen III oxidase [Vibrio harveyi
           1DA3]
 gi|269835874|gb|EEZ89950.1| oxygen-independent coproporphyrinogen III oxidase [Vibrio harveyi
           1DA3]
          Length = 463

 Score = 55.7 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 43/253 (16%), Positives = 91/253 (35%), Gaps = 24/253 (9%)

Query: 170 YNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLG 229
           +  +R ++ ++ I   C K C +C          S    + +D     I       +LLG
Sbjct: 53  HYPERPLSLYVHIPF-CHKLCYYCGCNKVITRH-SHKADEYLDVLEHEIRQ---RASLLG 107

Query: 230 QNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL-- 287
           +        G  G   TF      ++ +  L+R  +T S   ++S  +     +L +L  
Sbjct: 108 ERTVTQLHFG--GGTPTF-LSEKQITRVMDLLRQEFTFSADAEISIEVDPREIELTMLDH 164

Query: 288 -----MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS-DFIVGFPG 341
                   L + VQ  +  + + +NR         ++ R + +      ++ D I G P 
Sbjct: 165 LRGEGFNRLSIGVQDFNKEVQQLVNREQDEEFIFAMVARAKEL--GFRSTNLDLIYGLPK 222

Query: 342 ETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM---LEQVDENVKAERLLCLQKKL 398
           +T   F  T++ V ++   +   F Y+       +      + + +    E++  LQ  +
Sbjct: 223 QTKASFAKTLEQVLEMQPGRLSVFNYAHMPQLFAAQRKIKDDDLPKAE--EKMAILQDTI 280

Query: 399 REQQVSFNDACVG 411
                +     +G
Sbjct: 281 ATLTGAGYQ-FIG 292


>gi|212705027|ref|ZP_03313155.1| hypothetical protein DESPIG_03095 [Desulfovibrio piger ATCC 29098]
 gi|212671579|gb|EEB32062.1| hypothetical protein DESPIG_03095 [Desulfovibrio piger ATCC 29098]
          Length = 345

 Score = 55.7 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 35/209 (16%), Positives = 74/209 (35%), Gaps = 20/209 (9%)

Query: 169 GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR---SLSQVVDEARKLIDNGVCEI 225
              R   V   L     C + C +C + +    ++SR   S ++++  A + +  GV  +
Sbjct: 57  HKGRHVHVRGLLEFSNVCRRNCRYCGLRHEN-RQLSRYSLSAAELLRAASQAVAAGVDTL 115

Query: 226 TLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLD 285
            L                    + ++  L E  GL         PR+      +A  D  
Sbjct: 116 VLQSGETAR--------TPLWLAQVVRGLKERFGLPVTLSVGEQPREWYALWREAGADR- 166

Query: 286 VLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDD 345
                  L  ++   R+  +++  +   +  + +  +  +     + S F+VG PG+  +
Sbjct: 167 -----FLLKHETADARLYAALHPGYRLADRLRALSWLAEL--GYEVGSGFMVGVPGQRPE 219

Query: 346 DFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
                + LV  +  A   +  + P+  TP
Sbjct: 220 SLVDDILLVRDMRVAMCGAGPFVPQADTP 248


>gi|190573675|ref|YP_001971520.1| coproporphyrinogen III oxidase [Stenotrophomonas maltophilia K279a]
 gi|190011597|emb|CAQ45216.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Stenotrophomonas maltophilia K279a]
          Length = 469

 Score = 55.7 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 55/273 (20%), Positives = 101/273 (36%), Gaps = 43/273 (15%)

Query: 186 CDKFCTFC----VVPYTRGIEISRSLSQVVDEARK---LIDNGVCEITLLGQNVNAWRGK 238
           C   C +C    V+   RG   S  +S+V+ EA       ++G   I L           
Sbjct: 71  CSSPCFYCGCNRVITRDRGRGHSY-VSRVLAEADLLAPQFEDGREVIQL----------- 118

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLR-YTTSHPRDMSDCLIKAHGDLDVL-------MPY 290
            L G    F D     + ++GL R   ++ S  RD S  L     D   +          
Sbjct: 119 HLGGGTPNFLDAEAMTTLVEGLRRRFDFSDSPQRDFSIELDPRFIDTRDVAMLARLGFNR 178

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI-AISSDFIVGFPGETDDDFRA 349
             L VQ    ++ +S+NR     +   I+   R     + +++ D I G PG++ + F  
Sbjct: 179 ASLGVQDFDPQVQESINRIQGVQQTLDILRACRDS--GMRSVNVDLIYGLPGQSLEGFGR 236

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV---KAERLLCLQKKLREQQVSFN 406
           T++ V  +   +   + Y+           +Q+DE+      ++L  L   + +   +  
Sbjct: 237 TLERVLALRPDRLAVYGYAHLPHL--FRAQKQIDESRLPSPEDKLALLGLAVDKLSAAGY 294

Query: 407 DACVGQIIEVLIEK---HGKEKGKL----VGRS 432
              +G     L E+     +  G+L    +G +
Sbjct: 295 Q-YIGMDHFALPEEDLSRAQRAGQLHRNFMGYT 326


>gi|123966911|ref|YP_001011992.1| Fe-S oxidoreductase [Prochlorococcus marinus str. MIT 9515]
 gi|123201277|gb|ABM72885.1| Fe-S oxidoreductase [Prochlorococcus marinus str. MIT 9515]
          Length = 539

 Score = 55.7 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/182 (15%), Positives = 60/182 (32%), Gaps = 12/182 (6%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISR-SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK 238
           +  + GC   C FCV     G ++    +++V+ E ++L + GV             R  
Sbjct: 255 VQTKRGCPHNCCFCVYAVVEGKKVRVNPINEVIKEIKQLYEMGVRGFWFTDAQFIPTRNN 314

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
             D +      LL ++ +               ++   L +   D    M Y  + + SG
Sbjct: 315 IKDAK-----LLLQAIKDQGWNDIKWAAYIRADNIDRELAQLMVDTG--MSYFEIGITSG 367

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGF--PGETDDDFRATMDLVDK 356
           S  +++ M   +      +    +  V             F    ET +  + T+    +
Sbjct: 368 SQELVRKMKLAYNLKTVLENCRML--VDAGFRNHVSVNYSFNVFDETPNTIKQTIAYHRE 425

Query: 357 IG 358
           + 
Sbjct: 426 LE 427


>gi|51893291|ref|YP_075982.1| lipoyl synthase [Symbiobacterium thermophilum IAM 14863]
 gi|81610464|sp|Q67MF5|LIPA_SYMTH RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|51856980|dbj|BAD41138.1| lipoic acid synthetase [Symbiobacterium thermophilum IAM 14863]
          Length = 320

 Score = 55.7 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 35/219 (15%), Positives = 76/219 (34%), Gaps = 24/219 (10%)

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS-----RSLS 208
           ++V ++    +I +    R      F+ + + C + C FC V        S       L+
Sbjct: 53  HTVCEEARCPNIFECWNRRT---ATFMILGDICTRNCGFCAV-------RSGVPTGLDLA 102

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
           +    A   +  G+  + +        R    DG    F++ + ++        +     
Sbjct: 103 EPERVADACVQLGLRHVVVTSV----ARDDLSDGGASIFAETIRAIRRKNPFTGVEVLIP 158

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
                 D L         ++ +    V+  SDR+      ++      +++ R + ++P 
Sbjct: 159 DFGGNWDALAVVMDAEPDVLNHNIETVRRLSDRV--RSRAKYDRS--LELLRRAKEMKPH 214

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           ++  S  +VG  GET  +    MD +   G       +Y
Sbjct: 215 VSTKSSIMVGL-GETMQELYEAMDDLRAAGVDIVTFGQY 252


>gi|315652268|ref|ZP_07905260.1| TIGR01212 family radical SAM protein [Eubacterium saburreum DSM
           3986]
 gi|315485391|gb|EFU75781.1| TIGR01212 family radical SAM protein [Eubacterium saburreum DSM
           3986]
          Length = 297

 Score = 55.7 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/209 (15%), Positives = 75/209 (35%), Gaps = 18/209 (8%)

Query: 188 KFCTFCVVPYTRGIEISR-SLSQVVDEARKLIDNGV--------CEITLLGQNVNAWRGK 238
             C+FC    +    I    + + ++ A+ LI                   Q+ +   G 
Sbjct: 37  GGCSFCSEKGSGEFAIDVMDIDEQIERAKMLISKKFPNSIKINDRRYIAYFQSFSNTYGD 96

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMP-YLHLPVQS 297
                K   S    ++++    +      + P      ++     L+ + P ++ L +Q+
Sbjct: 97  ----IKRLLSLFERAINK--DDIVALSIATRPDCFCKEMLNGLEKLNKIKPVWIELGLQT 150

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
            ++   ++ NR +T   + +  D ++    +  +    I+G PGE+++D  AT+  + K 
Sbjct: 151 VNEATARAFNRGYTLDIFEKTYDELKKR--NFEVIVHMILGLPGESEEDMYATVKYLSKK 208

Query: 358 GYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
                         GT  +   E+    +
Sbjct: 209 HIDGIKIHGLHILKGTRIAIEYEKSPFKI 237


>gi|283781407|ref|YP_003372162.1| hypothetical protein Psta_3641 [Pirellula staleyi DSM 6068]
 gi|283439860|gb|ADB18302.1| conserved hypothetical protein [Pirellula staleyi DSM 6068]
          Length = 327

 Score = 55.7 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 40/198 (20%), Positives = 62/198 (31%), Gaps = 12/198 (6%)

Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG-KGLDGEKCT 246
             CTFC                V+++    I   +    +  Q +  ++      GE   
Sbjct: 57  GGCTFCDNRSF-SPSRRVRRRDVLEQINDGISR-LKMRYVCDQFIAYFQPATNTYGEVSK 114

Query: 247 FSDLLYSLSEIKGLVRLRYT--TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304
              L     E   +V +          D    L+   G    L   +   +Q+  DR L 
Sbjct: 115 LRALYERALEHPQVVGMAIGTRPDAVPDDVLDLLTEIGQRTYL--SVEYGMQTMHDRSLD 172

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
            MNR H        I   RS      I +  I+G PGE+ DD   +   V ++G      
Sbjct: 173 WMNRGHHHDAMIDAIA--RSQNRGFEICAHLILGLPGESHDDMVDSAKEVARLGLDAVKI 230

Query: 365 FKYSPRLGTPGSNMLEQV 382
                   T    + +QV
Sbjct: 231 HNLYAVHHT---KLADQV 245


>gi|254784821|ref|YP_003072249.1| lipoyl synthase [Teredinibacter turnerae T7901]
 gi|237687449|gb|ACR14713.1| lipoic acid synthase [Teredinibacter turnerae T7901]
          Length = 326

 Score = 55.7 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/224 (15%), Positives = 75/224 (33%), Gaps = 16/224 (7%)

Query: 161 ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS--QVVDEARKLI 218
           E  +  + G     G   F+ + + C + C FC V + +       L   +  + A  + 
Sbjct: 74  EEANCPNLGECFSGGTATFMIMGDICTRRCPFCDVGHGKPN----PLDANEPRNLAEAIA 129

Query: 219 DNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLI 278
           D  +  + +   +    R    DG    F+D +     +   +++   T   R   D  +
Sbjct: 130 DMSLKYVVITSVD----RDDLRDGGAQHFADCIRESRALSPELQVEILTPDFRGRMDIAL 185

Query: 279 KAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVG 338
                     P +         R+ +            +++ R ++ +P++   S  +VG
Sbjct: 186 DILAQEP---PDVFNHNLETVPRLYRQSRPGANYKWSLELLQRYKARKPEVLTKSGLMVG 242

Query: 339 FPGETDDDFRATMDLVDKIGYAQAFSFKYSP--RLGTPGSNMLE 380
             GET ++    +  +           +Y    R   P +  +E
Sbjct: 243 L-GETKEEIIEVLKDMRAHDIDMLTIGQYLQPSRDHLPVARYVE 285


>gi|237795889|ref|YP_002863441.1| radical SAM domain protein [Clostridium botulinum Ba4 str. 657]
 gi|229263292|gb|ACQ54325.1| radical SAM domain protein [Clostridium botulinum Ba4 str. 657]
          Length = 363

 Score = 55.7 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 38/212 (17%), Positives = 74/212 (34%), Gaps = 15/212 (7%)

Query: 176 VTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVN-- 233
           +      QEGC   C FC      G E    + +  +  R+ I+  +  I    +N    
Sbjct: 7   IIPIFVAQEGCPHNCVFCNQHKITG-EKDEMIDE--NYVRETIEAYIKTID--RENSTLE 61

Query: 234 -AWRGKGLDGEKCTFSDLLYSLSEI---KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMP 289
            ++ G    G        L  +++    KG +   + ++ P  +   ++           
Sbjct: 62  VSFFGGTFTGIPIERQKSLLKVAKEYKDKGQIDYIHMSTRPDYIDREILDNLKKYS--AD 119

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
            + L VQS  + +L    R H+ +E  +    I+       +    ++G PG+T      
Sbjct: 120 IIELGVQSLDNEVLLKSGRGHSVHEVHRASKLIKEY--GFTLGHQIMLGLPGDTFKKDIE 177

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           T+    ++    A  +       TP   ML +
Sbjct: 178 TVAKSLEMRPDIARIYPALVIKDTPMEYMLRK 209


>gi|218560942|ref|YP_002393855.1| coproporphyrinogen III oxidase [Escherichia coli S88]
 gi|218692153|ref|YP_002400365.1| coproporphyrinogen III oxidase [Escherichia coli ED1a]
 gi|306813867|ref|ZP_07448043.1| coproporphyrinogen III oxidase [Escherichia coli NC101]
 gi|331660417|ref|ZP_08361351.1| oxygen-independent coproporphyrinogen III oxidase [Escherichia coli
           TA206]
 gi|331685604|ref|ZP_08386187.1| oxygen-independent coproporphyrinogen III oxidase [Escherichia coli
           H299]
 gi|218367711|emb|CAR05500.1| coproporphyrinogen III oxidase, SAM and NAD(P)H dependent,
           oxygen-independent [Escherichia coli S88]
 gi|218429717|emb|CAR10678.2| coproporphyrinogen III oxidase, SAM and NAD(P)H dependent,
           oxygen-independent [Escherichia coli ED1a]
 gi|294493709|gb|ADE92465.1| oxygen-independent coproporphyrinogen III oxidase [Escherichia coli
           IHE3034]
 gi|305852865|gb|EFM53312.1| coproporphyrinogen III oxidase [Escherichia coli NC101]
 gi|307628944|gb|ADN73248.1| coproporphyrinogen III oxidase [Escherichia coli UM146]
 gi|315289574|gb|EFU48967.1| oxygen-independent coproporphyrinogen III oxidase [Escherichia coli
           MS 110-3]
 gi|315300252|gb|EFU59489.1| oxygen-independent coproporphyrinogen III oxidase [Escherichia coli
           MS 16-3]
 gi|320196909|gb|EFW71531.1| Coproporphyrinogen III oxidase, oxygen-independent [Escherichia
           coli WV_060327]
 gi|323189708|gb|EFZ74987.1| oxygen-independent coproporphyrinogen III oxidase [Escherichia coli
           RN587/1]
 gi|323949361|gb|EGB45250.1| oxygen-independent coproporphyrinogen III oxidase [Escherichia coli
           H252]
 gi|323954358|gb|EGB50143.1| oxygen-independent coproporphyrinogen III oxidase [Escherichia coli
           H263]
 gi|324006853|gb|EGB76072.1| oxygen-independent coproporphyrinogen III oxidase [Escherichia coli
           MS 57-2]
 gi|330908185|gb|EGH36704.1| coproporphyrinogen 3 oxidase, oxygen-independent [Escherichia coli
           AA86]
 gi|331052366|gb|EGI24403.1| oxygen-independent coproporphyrinogen III oxidase [Escherichia coli
           TA206]
 gi|331077075|gb|EGI48290.1| oxygen-independent coproporphyrinogen III oxidase [Escherichia coli
           H299]
          Length = 457

 Score = 55.7 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 44/269 (16%), Positives = 91/269 (33%), Gaps = 30/269 (11%)

Query: 157 EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS-------LSQ 209
           ED  E+  +       +R ++ ++ I   C K C FC        +  ++         +
Sbjct: 34  EDFGEQAFLQAVARYPERPLSLYVHIPF-CHKLCYFCGCNKIVTRQQHKADQYLDALEQE 92

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE-----IKGLVRLR 264
           +V  A       V ++   G       G      K   S L+  L E         + + 
Sbjct: 93  IVHRAPLFAGRHVSQLHWGG-------GTPTYLNKAQISRLMKLLRENFQFNADAEISIE 145

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
                PR++   ++            L + VQ  +  + + +NR         +++  R 
Sbjct: 146 V---DPREIELDVLDHLRAEG--FNRLSMGVQDFNKEVQRLVNREQDEEFIFALLNHARE 200

Query: 325 VRPDIAISS-DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQV 382
           +      ++ D I G P +T + F  T+  V ++   +   F Y+       +   ++  
Sbjct: 201 I--GFTSTNIDLIYGLPKQTPESFAFTLKRVAELNPDRLSVFNYAHLPTIFAAQRKIKDA 258

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVG 411
           D     ++L  LQ+ +     S     +G
Sbjct: 259 DLPSPQQKLDILQETIAFLTQSGYQ-FIG 286


>gi|167646713|ref|YP_001684376.1| lipoyl synthase [Caulobacter sp. K31]
 gi|167349143|gb|ABZ71878.1| lipoic acid synthetase [Caulobacter sp. K31]
          Length = 351

 Score = 55.7 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/220 (14%), Positives = 72/220 (32%), Gaps = 11/220 (5%)

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
           R +  D+ +    E  +  + G    +     + + E C + C FC V       +    
Sbjct: 73  RSIVRDHKLTTVCEEAACPNIGECWSQRHATMMIMGEICTRACAFCNVSTGLPNAL--DA 130

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
            +    A  +   G+  + +   +    R    DG    F++++ ++        +   T
Sbjct: 131 DEPRRVAEAVAKMGLKHVVITSVD----RDDLADGGARHFAEVVLAIRAAAPGTTIEILT 186

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
                              +  +    +++     LK +      Y   ++++R++   P
Sbjct: 187 PDFLRKDRAENVVIDARPDVFNH---NLETVPRLYLK-IRPGARYYHSLRLLERVKERDP 242

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
                S  +VG  GET ++    MD +   G       +Y
Sbjct: 243 SRFTKSGLMVGL-GETKEEVMQVMDDMRSAGVDFITIGQY 281


>gi|317047290|ref|YP_004114938.1| lipoic acid synthetase [Pantoea sp. At-9b]
 gi|316948907|gb|ADU68382.1| lipoic acid synthetase [Pantoea sp. At-9b]
          Length = 321

 Score = 55.7 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/212 (15%), Positives = 75/212 (35%), Gaps = 14/212 (6%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V    G   +   ++ V  A+ + D  +  + +   +    R    DG   
Sbjct: 94  CTRRCPFCDV--AHGRPNAPDANEPVKLAQTIADMALRYVVITSVD----RDDLRDGGAQ 147

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAH-GDLDVLMPYLHLPVQSGSDRILK 304
            F+D + ++ E    +++       R   D  ++        +  +    V     R+ +
Sbjct: 148 HFADCISAIREKSPSIKIETLVPDFRGRMDRALEILTATPPDVFNHNLENV----PRVYR 203

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
            +          ++++R +   P++   S  +VG  GET+ +    M  + + G      
Sbjct: 204 QVRPGANYEWSLKLLERFKEAHPNVPTKSGLMVGL-GETNAEIVEVMRDLRRHGVTMLTL 262

Query: 365 FKYSP--RLGTPGSNMLEQVDENVKAERLLCL 394
            +Y    R   P    +   + +   E  + +
Sbjct: 263 GQYLQPSRHHLPVQRYVSPAEFDEMKEEAMAM 294


>gi|253584056|ref|ZP_04861254.1| oxygen-independent coproporphyrinogen III oxidase [Fusobacterium
           varium ATCC 27725]
 gi|251834628|gb|EES63191.1| oxygen-independent coproporphyrinogen III oxidase [Fusobacterium
           varium ATCC 27725]
          Length = 422

 Score = 55.7 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 44/209 (21%), Positives = 73/209 (34%), Gaps = 13/209 (6%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           CDK C+FC        +I  SL           D                   G      
Sbjct: 58  CDKICSFC---NLNRKQIDGSLDSYAQYIADEFDKYGQTNYFKKSEFEVIFFGGGTPTVY 114

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY----LHLPVQSGSDR 301
               L   L  IK  V L        + +   +     L+V+M Y    L + +Q+ SDR
Sbjct: 115 KPHQLEIILESIKRNVTLTKDYEFTFETTLHNL-TEEKLEVMMKYGVNRLSVGIQTFSDR 173

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
             K  NR +   E  + + ++++      +  D I  FP ET ++      +V ++  + 
Sbjct: 174 GRKFYNRTYGKEEVIERLKKLKAFFKG-DVCVDIIYNFPDETLEEVIEDARIVKELELSS 232

Query: 362 AFSFKYSPRLGTPGSNMLEQVD-ENVKAE 389
           A  +      G   S + + ++ E VK E
Sbjct: 233 ASFYSLMVHEG---SKLSKDIEAEKVKLE 258


>gi|227327121|ref|ZP_03831145.1| coproporphyrinogen III oxidase [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 457

 Score = 55.7 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 45/248 (18%), Positives = 95/248 (38%), Gaps = 20/248 (8%)

Query: 173 KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNV 232
           +R ++ ++ I   C + C FC        +  +   + +D     I         +G+ V
Sbjct: 50  QRPLSLYIHIPF-CHRLCYFCGCNKLVTRQQHK-ADEYLDVLELEIRQ--RAPLFVGRTV 105

Query: 233 NAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL----- 287
                 G  G     + +   +S +  L+R  ++ S   ++S  +     +LDVL     
Sbjct: 106 TQLHWGG--GTPTYLNKV--QISRLMSLLRELFSFSDKAELSLEVDPREIELDVLDHLRA 161

Query: 288 --MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS-DFIVGFPGETD 344
                L + VQ  +  + K +NR         +I+R +++      ++ D I G P +T 
Sbjct: 162 EGFNRLSMGVQDFNKDVQKLVNREQDEDFIFALIERAKAL--GFTSTNIDLIYGLPKQTP 219

Query: 345 DDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQV 403
           + F  T+  V ++   +   F Y+       +   +++ D     ++L  LQ+ +     
Sbjct: 220 ESFAFTLQRVAELNPHRLSVFNYAHLPSLFAAQRKIKEADLPSAEQKLDILQQTIGSLTE 279

Query: 404 SFNDACVG 411
           S     +G
Sbjct: 280 SGYQ-FIG 286


>gi|32473644|ref|NP_866638.1| Fe-S oxidoreductase [Rhodopirellula baltica SH 1]
 gi|32444180|emb|CAD74177.1| Fe-S oxidoreductase [Rhodopirellula baltica SH 1]
          Length = 672

 Score = 55.7 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/183 (18%), Positives = 62/183 (33%), Gaps = 19/183 (10%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEA-RKLIDNGVCEITLLGQNVNAWRGK 238
           + I  GC   C FC     +     R +  +VD A       G  E              
Sbjct: 342 IEIMRGCPHLCRFCQSTVIKRPLRIREVDTIVDAALESYRSTGFNE---------ISILS 392

Query: 239 GLDGEKCTFSDLLYSLSE--IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQ 296
               +   F++L+  L E  +   V +   +    D    L +  G        L L  +
Sbjct: 393 LSSSDYPHFAELVKRLHEVFVPLDVNISVPSLRVNDQLRTLPELLGSTRR--KSLTLAPE 450

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI--AISSDFIVGFPGETDDDFRATMDLV 354
              D + + + ++    +   +I+  R+   +   ++   F+ G PGE   D    +DL 
Sbjct: 451 VARDDMRQQIRKKI---KNSDLIEGCRAAFQNGFESVKLYFMCGLPGERPVDLDGIVDLA 507

Query: 355 DKI 357
           + I
Sbjct: 508 ETI 510


>gi|313608423|gb|EFR84365.1| radical SAM protein, family [Listeria monocytogenes FSL F2-208]
          Length = 321

 Score = 55.7 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 38/195 (19%), Positives = 69/195 (35%), Gaps = 19/195 (9%)

Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDE--ARKLIDNGVCEITLLG-----QNVNAWRGKGL 240
             CTFC    +      R+L   V     R  +     +   +       N +A   +  
Sbjct: 52  GGCTFCSAAGSGDFAGDRALDLKVQFQQVRDKMQTKWKDGKCIAYFQAFTNTHAPVAE-- 109

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL-DVLMPYLHLPVQSGS 299
                   +   ++    G+V L    + P  + D +++   +L +    +L L +QS  
Sbjct: 110 ------LREKFETVLNEPGVVGLSI-ATRPDCLPDDVVEYLAELNERTYLWLELGLQSAH 162

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
           D   + +NR H    Y + + +++    +I I +  I G P ET +    T   V + G 
Sbjct: 163 DETGRLINRAHDYDCYVEGVRKLQK--HNIRICTHIINGLPKETPEMMMETTRKVVESGV 220

Query: 360 AQAFSFKYSPRLGTP 374
                       GTP
Sbjct: 221 DGIKIHLLHLLKGTP 235


>gi|257082735|ref|ZP_05577096.1| coproporphyrinogen III oxidase [Enterococcus faecalis E1Sol]
 gi|256990765|gb|EEU78067.1| coproporphyrinogen III oxidase [Enterococcus faecalis E1Sol]
          Length = 382

 Score = 55.7 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 49/254 (19%), Positives = 98/254 (38%), Gaps = 28/254 (11%)

Query: 177 TAFLTIQEGCDKFCTFCVV--PYTRGIEISRSLSQVVDEARKLI----DNGVCEITLLGQ 230
           +A++ I   C+  C +C     +  G  +   +  ++ E +       +  +  I + G 
Sbjct: 5   SAYIHIPF-CEHICYYCDFNKVFLEGQPVDEYIQSLLKEIQLTQALYPEQEMKTIYIGGG 63

Query: 231 NVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT-SHPRDMSDCLIKAHGDLDVLMP 289
              +   K LD        +   L       R  +T  ++P D++   ++   +    + 
Sbjct: 64  TPTSLSAKQLD---VLLKGVREQL---TFDDRNEFTVEANPGDLTQEKLQVMKNYG--VN 115

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI-RSVRPDIAISSDFIVGFPGETDDDFR 348
            L + VQ+  DR+LK + R+HTA +  + +  + +    +++I  D I   PG+T + FR
Sbjct: 116 RLSMGVQTFDDRLLKKIGRKHTAADVYETMKFLEKENFTNVSI--DLIYALPGQTLESFR 173

Query: 349 ATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE----QVDENVKA-----ERLLCLQKKLR 399
            T+     +       +       T   N +     Q+ E         E +  ++KK R
Sbjct: 174 DTLTRALALDLPHYSLYSLILENKTMFMNWVRQGRLQLPEEEIEAQMFDETIEAMEKKGR 233

Query: 400 EQQVSFNDACVGQI 413
            Q    N A  G+ 
Sbjct: 234 HQYEVSNFALTGKE 247


>gi|291614792|ref|YP_003524949.1| radical SAM domain protein [Sideroxydans lithotrophicus ES-1]
 gi|291584904|gb|ADE12562.1| Radical SAM domain protein [Sideroxydans lithotrophicus ES-1]
          Length = 503

 Score = 55.7 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 50/340 (14%), Positives = 108/340 (31%), Gaps = 26/340 (7%)

Query: 40  DSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGG 99
           D+  ME +  ++  E V ++  A   ++    +           +  I  +     +   
Sbjct: 33  DTEIMEFILQNRPEEIVEALLAAQPRIIGF-GV-------YIWNVTEITRVVALLKRVAP 84

Query: 100 DLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR---LPELLERARFGKRVVDTDYSV 156
            + VV+ G     E +E        +V+ G           EL ++    ++++      
Sbjct: 85  QITVVLGGPEVSYECDEQEVVRLADHVITGWGDISFARLCRELFQQRPQAQKIIAGIQPK 144

Query: 157 --EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEA 214
             E K       D     +   T ++    GC   C FC+    +       L + +DE 
Sbjct: 145 LSEIKLPYALYSDHDIAHR---TLYVEASRGCPFKCEFCLSSLDKTSLA-FDLDRFLDEM 200

Query: 215 RKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMS 274
            KL   G      + +  N          K     L + L  +   + + +    P  + 
Sbjct: 201 DKLYQRGARLFKFVDRTFNLNI-------KTGVRILEFFLERLDDKLFVHFEVI-PDHLP 252

Query: 275 DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSD 334
           + L        V      + +Q+ +  +   ++R+    +  + +  ++       +  D
Sbjct: 253 EQLKALIVKFPVGSLQFEVGIQTFNPEVQALISRKQDTAKTEENLRWLQQES-HAHVHVD 311

Query: 335 FIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
            I+G PGE         D +  +   +  +       GTP
Sbjct: 312 LIIGLPGEDVASIADGFDRLIALKQQEIQAGVLKRLRGTP 351


>gi|225181897|ref|ZP_03735332.1| Radical SAM domain protein [Dethiobacter alkaliphilus AHT 1]
 gi|225167411|gb|EEG76227.1| Radical SAM domain protein [Dethiobacter alkaliphilus AHT 1]
          Length = 331

 Score = 55.7 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 52/241 (21%), Positives = 87/241 (36%), Gaps = 48/241 (19%)

Query: 175 GVTAFLTIQEGCDKFCTFCVVPYTR----GIEI-------SRSLSQVVDEARKLIDNGVC 223
             TA+L + EGC   C+FC  P +R    G          S +   + +  ++   N + 
Sbjct: 23  PTTAYLLLGEGCVMNCSFC--PQSRTSSGGASRLGRVTWPSFTREDLKEGLKEAEGNNIK 80

Query: 224 EITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT---TSHPRDMSDCLIKA 280
            + L G            G+K     LL ++ EIK    L             ++ L  A
Sbjct: 81  RVCLQGV---------RQGDKQ--ESLLRTIKEIKNNSSLPLCISAWIKKPQEAEELFAA 129

Query: 281 HGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFP 340
             D       L + +   +    K +          Q++       P   IS+  I+G  
Sbjct: 130 GADR------LSIALDVVNPDAYKDIKGGSYKER-LQLLLNCARRWPG-KISTHIIIGV- 180

Query: 341 GETDDDFRATMDLVDKIGYAQAFS--FKYSPRLGTP-GSNMLEQVDENVKAERLLCLQKK 397
           GET++    T+ + DK+         F ++P  GTP GS+   ++      ER   +Q  
Sbjct: 181 GETEE---ETVAIFDKLIKENVTIALFAFTPIKGTPLGSSAPPKI------ERYRRMQAA 231

Query: 398 L 398
           L
Sbjct: 232 L 232


>gi|167625153|ref|YP_001675447.1| lipoyl synthase [Shewanella halifaxensis HAW-EB4]
 gi|189046790|sp|B0TR57|LIPA_SHEHH RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|167355175|gb|ABZ77788.1| lipoic acid synthetase [Shewanella halifaxensis HAW-EB4]
          Length = 321

 Score = 55.7 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 39/261 (14%), Positives = 78/261 (29%), Gaps = 21/261 (8%)

Query: 116 EILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYS-------VEDKFERLSIVDG 168
           E + R P+  V    +T  R P+ L           TD         +    E  S  + 
Sbjct: 17  EKVSRIPVKVVPSERETMLRKPDWLRVKLPASNQRITDIKQALRKNGLHSVCEEASCPNL 76

Query: 169 GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLL 228
                 G   F+ +   C + C FC V    G  +     +    A+ + D  +  + + 
Sbjct: 77  SECFNHGTATFMILGAICTRRCPFCDV--AHGRPLKPDAEEPKKLAQTIKDMKLKYVVIT 134

Query: 229 GQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLD--V 286
             +    R    DG    F+D +  +  +   +++       R   D  +         V
Sbjct: 135 SVD----RDDLRDGGAQHFADCIREIRLLNPEIKIETLVPDFRGRIDAALDILATEPPDV 190

Query: 287 LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDD 346
               L            +             ++ + +   PDI   S  ++G  GE++++
Sbjct: 191 FNHNLETAPMHY-----RKARPGANYQWSLDLLKKFKERHPDIPTKSGLMMGL-GESNEE 244

Query: 347 FRATMDLVDKIGYAQAFSFKY 367
               +  +           +Y
Sbjct: 245 IAQVLYDLRAHNVEMLTLGQY 265


>gi|149640654|ref|XP_001512706.1| PREDICTED: similar to lipoic acid synthetase [Ornithorhynchus
           anatinus]
          Length = 391

 Score = 55.7 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 57/324 (17%), Positives = 114/324 (35%), Gaps = 28/324 (8%)

Query: 80  VYSFLGRIRNLKNSRIKEGGDLLVVVAGCV----AQAEGEEILRRSPIVNVVVGPQTYYR 135
            +  L  + + K   +K G DL   V+G +    A A+ +E L+R     + + P     
Sbjct: 35  RFRRLSSLPDEKKEYLKNGPDLQDFVSGDLSDKSAWADYKENLKRQKGERLRLPPWLKTE 94

Query: 136 LPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQ---EGCDKFCTF 192
           +P      +    + + +     +  R   +   +      TA  TI    + C + C F
Sbjct: 95  IPIGKNYNKLKSSLRNLNLHTVCEEARCPNIGECWGGGENATATATIMLMGDTCTRGCRF 154

Query: 193 CVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLY 252
           C V   R         +  + A+ + + G+  + L   +    R    DG    F+  + 
Sbjct: 155 CSVKTARNPP-PLDPEEPYNTAKAIAEWGLDYVVLTSVD----RDDLPDGGAEHFARTVS 209

Query: 253 SLSEIKGLVRLRYTTSHPR-DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
            L E    + +   T   R D+      A   LDV    +    +       +  + R +
Sbjct: 210 HLKERNSKILVECLTPDFRGDLRAVEKVALSGLDVFAHNVETVPE----LQRQVRDPRAS 265

Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS--- 368
             +  +++   ++V+P +   +  ++G  GETD+   +T+  + +         +Y    
Sbjct: 266 FAQSVRVLKHAKNVQPRLVSKTSLMLGL-GETDEQVYSTLKALREADVDCLTLGQYMQPT 324

Query: 369 ------PRLGTPG-SNMLEQVDEN 385
                     TP      E+V E 
Sbjct: 325 RRHLKVEEYITPAKFKHWEKVGEE 348


>gi|148979752|ref|ZP_01815689.1| hypothetical protein VSWAT3_08306 [Vibrionales bacterium SWAT-3]
 gi|145961635|gb|EDK26934.1| hypothetical protein VSWAT3_08306 [Vibrionales bacterium SWAT-3]
          Length = 317

 Score = 55.7 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 2/88 (2%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +L L +Q+ ++  LK +NR H    Y  I  R R++   I + +  IVG P ET  D   
Sbjct: 143 WLELGLQTANNSTLKRINRGHDFAVYETITQRARAL--GIKVCTHLIVGLPKETKADNLE 200

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
           T+D V  +G             G+  + 
Sbjct: 201 TLDKVLAVGTDGIKLHGLHIVEGSTMAK 228


>gi|51891491|ref|YP_074182.1| biotin synthase [Symbiobacterium thermophilum IAM 14863]
 gi|51855180|dbj|BAD39338.1| putative biotin synthetase [Symbiobacterium thermophilum IAM 14863]
          Length = 350

 Score = 55.7 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/206 (15%), Positives = 67/206 (32%), Gaps = 20/206 (9%)

Query: 174 RGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR--SLSQVVDEARKLIDNGVCEITLLGQN 231
           RG+  F  I   C   C +C +  +         +  ++V  A+     G   + L    
Sbjct: 57  RGLIEFSNI---CRMDCCYCGIRRSNRHVRRYRMTPEEIVAAAQGAWRLGYGSVVLQS-- 111

Query: 232 VNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL 291
                G+G   +    + ++  +     L          R+      +A  D        
Sbjct: 112 -----GEGDALDPEELAGVVRQIKATTPLAVTLSVGERTREEYALWREAGADR------F 160

Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351
            L  ++    +   +       +  Q +  +R +     + S F+VG PG+T       +
Sbjct: 161 LLRHETADPELFARLRPGRRLEQRIQCLLWLREL--GYQVGSGFMVGLPGQTVGTLADDI 218

Query: 352 DLVDKIGYAQAFSFKYSPRLGTPGSN 377
            L+ ++    A    + P   TP ++
Sbjct: 219 LLLKRLNVEMAGIGPFIPAPHTPLAD 244


>gi|325479080|gb|EGC82180.1| iron-only hydrogenase maturation rSAM protein HydE [Anaerococcus
           prevotii ACS-065-V-Col13]
          Length = 347

 Score = 55.7 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 39/210 (18%), Positives = 71/210 (33%), Gaps = 20/210 (9%)

Query: 174 RGVTAFLTIQEGCDKFCTFCVVPYTRGI-EISR-SLSQVVDEARKLIDNGVCEITLLGQN 231
           RG+  F  I   C   C +C +  +    E  R +  +++  AR     G     L G  
Sbjct: 46  RGLIEFSNI---CKNDCYYCGIRKSNDRVERYRLTKEEIISCARLGYQLGYRTFVLQG-- 100

Query: 232 VNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSD-CLIKAHGDLDVLMPY 290
                G+          D++ S+ EI   V +  +       S   L +A  D      Y
Sbjct: 101 -----GEDGHFSDDIVVDIVKSIKEIHDDVAITLSLGERSYESYKRLFEAGAD-----RY 150

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
           L     S  D   K      +    R+ +  ++ +     +   F+VG P +T +     
Sbjct: 151 LLRQETSDKDHYEKLHPESMSFENRRKALRDLKEI--GFQVGGGFMVGSPYQTTESLIKD 208

Query: 351 MDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           +  ++++  A      Y  +  TP  +   
Sbjct: 209 LRFLEELEPAMIGIGPYMTQHDTPFKDFPN 238


>gi|282896397|ref|ZP_06304418.1| Radical SAM [Raphidiopsis brookii D9]
 gi|281198685|gb|EFA73565.1| Radical SAM [Raphidiopsis brookii D9]
          Length = 868

 Score = 55.7 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 45/254 (17%), Positives = 82/254 (32%), Gaps = 32/254 (12%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVD-EARKLIDNGVCEITLLGQNVNAWRGK 238
           + I+ GC + C FC               +VV+     +   G  E +LL  + + +   
Sbjct: 254 IEIRRGCTRGCRFCQPGMLTRPARDVEPEKVVEAIVDGMHKTGYNEFSLLSLSCSDYLSL 313

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
              G +        ++             S   D  D  I            L    ++G
Sbjct: 314 PAVGMEIKNRLKNENI--------TLSLPSQRVDRFDENIAKILGGTR-QGSLTFAPEAG 364

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDD---FRATMDLVD 355
           S R+   +N+  T  E  + I        D  I   F++G PGETD D      T+  + 
Sbjct: 365 SQRMRDIINKGLTNEELLRGIKTAWEKGWD-KIKLYFMIGLPGETDADILAIAETVRWLQ 423

Query: 356 K---------IGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA--------ERLLCLQKKL 398
           +         I +       ++P+  TP         E V+          R   ++   
Sbjct: 424 RECRAQDRRSISF-NLTVSNFTPKPHTPFQWHSVSTSEFVRKQNLLKQEFRRTRNVKVNF 482

Query: 399 REQQVSFNDACVGQ 412
            + ++S  +  +G+
Sbjct: 483 TDVRLSAMEDFIGR 496


>gi|256962102|ref|ZP_05566273.1| coproporphyrinogen III oxidase [Enterococcus faecalis Merz96]
 gi|293383126|ref|ZP_06629043.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Enterococcus faecalis R712]
 gi|293387721|ref|ZP_06632266.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Enterococcus faecalis S613]
 gi|312907286|ref|ZP_07766277.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Enterococcus faecalis DAPTO 512]
 gi|312909904|ref|ZP_07768752.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Enterococcus faecalis DAPTO 516]
 gi|256952598|gb|EEU69230.1| coproporphyrinogen III oxidase [Enterococcus faecalis Merz96]
 gi|291079465|gb|EFE16829.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Enterococcus faecalis R712]
 gi|291082910|gb|EFE19873.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Enterococcus faecalis S613]
 gi|310626314|gb|EFQ09597.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Enterococcus faecalis DAPTO 512]
 gi|311289862|gb|EFQ68418.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Enterococcus faecalis DAPTO 516]
          Length = 382

 Score = 55.7 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 49/254 (19%), Positives = 98/254 (38%), Gaps = 28/254 (11%)

Query: 177 TAFLTIQEGCDKFCTFCVV--PYTRGIEISRSLSQVVDEARKLI----DNGVCEITLLGQ 230
           +A++ I   C+  C +C     +  G  +   +  ++ E +       +  +  I + G 
Sbjct: 5   SAYIHIPF-CEHICYYCDFNKVFLEGQPVDEYIQSLLKEIQLTQALYPEQEMKTIYIGGG 63

Query: 231 NVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT-SHPRDMSDCLIKAHGDLDVLMP 289
              +   K LD        +   L       R  +T  ++P D++   ++   +    + 
Sbjct: 64  TPTSLSAKQLD---VLLKGVREQL---TFDDRNEFTVEANPGDLTQEKLQVMKNYG--VN 115

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI-RSVRPDIAISSDFIVGFPGETDDDFR 348
            L + VQ+  DR+LK + R+HTA +  + +  + +    +++I  D I   PG+T + FR
Sbjct: 116 RLSMGVQTFDDRLLKKIGRKHTAADVYETMKFLEKENFTNVSI--DLIYALPGQTLESFR 173

Query: 349 ATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE----QVDENVKA-----ERLLCLQKKLR 399
            T+     +       +       T   N +     Q+ E         E +  ++KK R
Sbjct: 174 DTLTRALALDLPHYSLYSLILENKTMFMNWVRQGRLQLPEEEIEAQMFDETIEAMEKKGR 233

Query: 400 EQQVSFNDACVGQI 413
            Q    N A  G+ 
Sbjct: 234 HQYEVSNFALTGKE 247


>gi|12518746|gb|AAG59056.1|AE005617_5 O2-independent coproporphyrinogen III oxidase [Escherichia coli
           O157:H7 str. EDL933]
          Length = 459

 Score = 55.7 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 44/269 (16%), Positives = 91/269 (33%), Gaps = 30/269 (11%)

Query: 157 EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS-------LSQ 209
           ED  E+  +       +R ++ ++ I   C K C FC        +  ++         +
Sbjct: 36  EDFGEQAFLQAVARYPERPLSLYVHIPF-CHKLCYFCGCNKIVTRQQHKADQYLDALEQE 94

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE-----IKGLVRLR 264
           +V  A       V ++   G       G      K   S L+  L E         + + 
Sbjct: 95  IVHRAPLFAGRHVSQLHWGG-------GTPTYLNKAQISRLMKLLRENFQFNADAEISIE 147

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
                PR++   ++            L + VQ  +  + + +NR         +++  R 
Sbjct: 148 V---DPREIELDVLDHLRAEG--FNRLSMGVQDFNKEVQRLVNREQDEEFIFALLNHARE 202

Query: 325 VRPDIAISS-DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQV 382
           +      ++ D I G P +T + F  T+  V ++   +   F Y+       +   ++  
Sbjct: 203 I--GFTSTNIDLIYGLPKQTPESFAFTLKRVAELNPDRLSVFNYAHLPTIFAAQRKIKDA 260

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVG 411
           D     ++L  LQ+ +     S     +G
Sbjct: 261 DLPSPQQKLDILQETIAFLTQSGYQ-FIG 288


>gi|116754832|ref|YP_843950.1| radical SAM domain-containing protein [Methanosaeta thermophila PT]
 gi|116666283|gb|ABK15310.1| Radical SAM N-terminal domain protein [Methanosaeta thermophila PT]
          Length = 598

 Score = 55.7 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 48/304 (15%), Positives = 96/304 (31%), Gaps = 48/304 (15%)

Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSLS 208
           +D  Y +                   V   +T   GC   C+FC + + +G  + SRS+ 
Sbjct: 275 LDRIYELPYIRREHPSYRKPVPALESVRFSITSHRGCFGSCSFCALTHHQGRIVQSRSIE 334

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSD------------------- 249
            ++ EAR+L++       +  Q+V       + G  C   +                   
Sbjct: 335 SILKEARRLVEMPGFRGVI--QDVGGPT-ADMYGMVCALWERGGCGRICTPECDNIEISH 391

Query: 250 -----LLYSLSEIKGLVRLRYTTSHPRDMSD------CLIKAHGDLDVLMPYLHLPVQSG 298
                LL  L EI G+  +  ++    D+         L       + +  +L +  +  
Sbjct: 392 RRYLELLRRLKEIPGVRHVFVSSGIRHDLVVRDEKYGELFLEELCREHVSGHLKIAPEHI 451

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSV-----RPDIAISSDFIVGFPGETDDDFRATMDL 353
           S+ + + M++          ++  R       R +  +    + G PG T  D     + 
Sbjct: 452 SESVTRCMHKP-PVEVLDAFMNCFRRAAGKSGREEYVLP-YLMSGHPGCTVRDMIELAEY 509

Query: 354 VDKIGYAQAFSFKYSPRLGTPGSNMLE-------QVDENVKAERLLCLQKKLREQQVSFN 406
           +            ++P   T  + M             +V   R   +Q+ L +  +  N
Sbjct: 510 MRDHRIRVEQVQDFTPTPMTVSTTMYHTGLDPFTMKPVHVPRGREKMIQRALLQYWLPQN 569

Query: 407 DACV 410
              V
Sbjct: 570 RKLV 573


>gi|88811916|ref|ZP_01127169.1| lipoyl synthase [Nitrococcus mobilis Nb-231]
 gi|88790800|gb|EAR21914.1| lipoyl synthase [Nitrococcus mobilis Nb-231]
          Length = 334

 Score = 55.7 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/227 (14%), Positives = 75/227 (33%), Gaps = 23/227 (10%)

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
           + +  D+ +    E     +       G    + + + C + C FC V          + 
Sbjct: 61  KQIVRDHRLATVCEESMCPNIAECWGSGTATLMLMGDVCTRACRFCAVDTGNPRGR-LNP 119

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
            +    A  +   G+  + L   +    R    DG    ++D +  + +      +   T
Sbjct: 120 DEPRLAAETVQLMGLKYVVLTSVD----RDDLPDGGASHYADCVRWIKQNNPETAIEVLT 175

Query: 268 SHPRDMSDCL-------IKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
              + + + +       I         +  L  PV+          + R +      +++
Sbjct: 176 PDFKGVLEHVAQVAGTNIDVFAQNVETVKRLTHPVR----------DPRASYETTLGVLE 225

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
            ++   P +   +  ++G  GETD++   TMD +  +G       +Y
Sbjct: 226 YVKQHYPTVLTKTSLMLGL-GETDEEVLETMDELRAVGVDIITFGQY 271


>gi|291302349|ref|YP_003513627.1| lipoic acid synthetase [Stackebrandtia nassauensis DSM 44728]
 gi|290571569|gb|ADD44534.1| lipoic acid synthetase [Stackebrandtia nassauensis DSM 44728]
          Length = 311

 Score = 55.7 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/219 (16%), Positives = 69/219 (31%), Gaps = 18/219 (8%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC +    G        +    A  +   G+   T+ G      R    DG   
Sbjct: 82  CTRRCDFCQI--DTGKPQPLDRDEPRRVADSVSTMGLKYATITGV----ARDDLDDGGAW 135

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
            +++ +  +        +           + L +       ++ +    V     RI K 
Sbjct: 136 LYAETVRQIHAAVPGCGVELLIPDFNAEPEQLAEVFSARPEVLAHNIETV----PRIFKR 191

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           +          ++I + R     +   S+ I+G  GET ++    +  + + G       
Sbjct: 192 IRPGFRYERSLEVITKARE--DGLVTKSNLILGM-GETREEVSQALRDLHEAGCELITIT 248

Query: 366 KYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVS 404
           +Y  R  TP       VD  VK E  + L  +      +
Sbjct: 249 QYL-RP-TP---RHHPVDRWVKPEEFVELSAEAEAMGYA 282


>gi|237785378|ref|YP_002906083.1| biotin synthase [Corynebacterium kroppenstedtii DSM 44385]
 gi|237758290|gb|ACR17540.1| biotin synthase [Corynebacterium kroppenstedtii DSM 44385]
          Length = 354

 Score = 55.7 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 35/205 (17%), Positives = 69/205 (33%), Gaps = 32/205 (15%)

Query: 185 GCDKFCTFC-VVPYTRGIEISR--SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD 241
           GC + C FC           S    +  +V+ A++    G  E  ++     A +G    
Sbjct: 89  GCPEDCHFCAQSGLFESPVRSAWLDIPALVEAAKQTAKTGATEFCIVA----AVKGPD-- 142

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
             +   S L  +++ IK  V +    S    ++   ++      V             + 
Sbjct: 143 --ERLMSQLEEAIAAIKAEVDIEVAASIGI-LTKEQVERLAKAGV----------HRYNH 189

Query: 302 ILKSMNR-------RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
            L++           H+  + R+  + +R     + +    IVG  GET +        +
Sbjct: 190 NLETAKSYFPHVVTTHSWEKRRETCEMVRDA--GMEVCCGGIVGM-GETVEQRAEFAAQL 246

Query: 355 DKIGYAQAFSFKYSPRLGTPGSNML 379
            ++   +       PR GTP +N  
Sbjct: 247 AELRPDEVPMNFLDPRPGTPFANRP 271


>gi|222056729|ref|YP_002539091.1| radical SAM protein [Geobacter sp. FRC-32]
 gi|221566018|gb|ACM21990.1| Radical SAM domain protein [Geobacter sp. FRC-32]
          Length = 473

 Score = 55.7 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 55/335 (16%), Positives = 106/335 (31%), Gaps = 31/335 (9%)

Query: 48  FFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAG 107
              +  E +++ D  DL+V+                    R+   +       + V + G
Sbjct: 46  LVDEHVEELDTSDHPDLVVI------------QAYVTSARRSYMIADHYRSKGVFVAMGG 93

Query: 108 CVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVD 167
               +  EE    +    + +GP        L +  R   R+V    +           D
Sbjct: 94  LHVTSLPEEAKLHADA--IFLGPGEDTFPAFLADFRRREPRLVYFSPNRSLMGVPPPRRD 151

Query: 168 GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITL 227
                   V   L +  GC   C FC          S    +V     ++       +  
Sbjct: 152 LIKWELYLVPNSLVVSRGCPHHCNFCYKDSFFQGGASFYTQRVDAALAEIESLPGRHLYF 211

Query: 228 LGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM-SDCLIKAHGDLDV 286
           L  ++   R    +       D +       G+ RL    +    +    LI+    ++ 
Sbjct: 212 LDDHLLGDRHFAAN-----LFDGMR------GMNRLFQGAATVDSILEGDLIE--RAVEA 258

Query: 287 LMPYLHLPVQSGSDRILKSMNRRHT-AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDD 345
            +  + +  +S   R L++ N+R     +Y ++I R+  +   + I+  F+ G   +  D
Sbjct: 259 GLRSIFIGFESIDPRNLQASNKRQNLGRDYDRVIRRLDDL--GVFINGSFVFGLDSDGPD 316

Query: 346 DFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
            FR T     + G   A     +P  GT     L+
Sbjct: 317 IFRRTASWAIERGITTATFHILTPYPGTALFRTLD 351


>gi|296390084|ref|ZP_06879559.1| coproporphyrinogen III oxidase [Pseudomonas aeruginosa PAb1]
          Length = 318

 Score = 55.7 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 81/223 (36%), Gaps = 19/223 (8%)

Query: 159 KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC----VVPYTRGIEISRS-LSQVVDE 213
            F++L  +         ++ ++ I   C   C +C    V+   RG   S   L+++V E
Sbjct: 37  PFDQLHALRDSRKAGHPLSLYVHIPF-CANICYYCACNKVITKDRG--RSAPYLARLVRE 93

Query: 214 ARK-----LIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
                     +  V ++   G          L          L  L +  G   +     
Sbjct: 94  IEIVSRHLSREQVVEQLHFGGGTPTFLSPGQLRELMSQLRTHLNLLDDDSGDYGIEIDPR 153

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
                +  L++  G        + L VQ     + K++NR  T  E R I++  R+++  
Sbjct: 154 EADWSTMGLLRELG-----FNRVSLGVQDFDMEVQKAVNRMQTPEETRTIVEAARTLQYR 208

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
            +I+ D I G P +T D F  T+D V  +   +   F Y+   
Sbjct: 209 -SINLDLIYGLPKQTPDSFARTVDEVIALQPDRLSVFNYAHLP 250


>gi|293417327|ref|ZP_06659951.1| oxygen-independent coproporphyrinogen III oxidase [Escherichia coli
           B185]
 gi|291430847|gb|EFF03843.1| oxygen-independent coproporphyrinogen III oxidase [Escherichia coli
           B185]
          Length = 457

 Score = 55.7 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 44/269 (16%), Positives = 91/269 (33%), Gaps = 30/269 (11%)

Query: 157 EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS-------LSQ 209
           ED  E+  +       +R ++ ++ I   C K C FC        +  ++         +
Sbjct: 34  EDFGEQAFLQAVARYPERPLSLYVHIPF-CHKLCYFCGCNKIVTRQQHKADQYLDALEQE 92

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE-----IKGLVRLR 264
           +V  A       V ++   G       G      K   S L+  L E         + + 
Sbjct: 93  IVHRAPLFAGRHVSQLHWGG-------GTPTYLNKAQISRLMKLLRENFQFNADAEISIE 145

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
                PR++   ++            L + VQ  +  + + +NR         +++  R 
Sbjct: 146 V---DPREIELDVLDHLRAEG--FNRLSMGVQDFNKEVQRLVNREQDEEFIFALLNHARE 200

Query: 325 VRPDIAISS-DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQV 382
           +      ++ D I G P +T + F  T+  V ++   +   F Y+       +   ++  
Sbjct: 201 I--GFTSTNIDLIYGLPKQTPESFAFTLKRVAELNPDRLSVFNYAHLPTIFAAQRKIKDA 258

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVG 411
           D     ++L  LQ+ +     S     +G
Sbjct: 259 DLPSPQQKLDILQETIAFLTQSGYQ-FIG 286


>gi|218707492|ref|YP_002415011.1| coproporphyrinogen III oxidase [Escherichia coli UMN026]
 gi|293407486|ref|ZP_06651405.1| coproporphyrinogen III oxidase [Escherichia coli FVEC1412]
 gi|298383229|ref|ZP_06992822.1| oxygen-independent coproporphyrinogen-III oxidase [Escherichia coli
           FVEC1302]
 gi|300896909|ref|ZP_07115395.1| oxygen-independent coproporphyrinogen III oxidase [Escherichia coli
           MS 198-1]
 gi|218434589|emb|CAR15518.1| coproporphyrinogen III oxidase, SAM and NAD(P)H dependent,
           oxygen-independent [Escherichia coli UMN026]
 gi|284923968|emb|CBG37067.1| oxygen-independent coproporphyrinogen III oxidase [Escherichia coli
           042]
 gi|291425403|gb|EFE98442.1| coproporphyrinogen III oxidase [Escherichia coli FVEC1412]
 gi|298276263|gb|EFI17783.1| oxygen-independent coproporphyrinogen-III oxidase [Escherichia coli
           FVEC1302]
 gi|300359262|gb|EFJ75132.1| oxygen-independent coproporphyrinogen III oxidase [Escherichia coli
           MS 198-1]
          Length = 457

 Score = 55.7 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 44/269 (16%), Positives = 91/269 (33%), Gaps = 30/269 (11%)

Query: 157 EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS-------LSQ 209
           ED  E+  +       +R ++ ++ I   C K C FC        +  ++         +
Sbjct: 34  EDFGEQAFLQAVARYPERPLSLYVHIPF-CHKLCYFCGCNKIVTRQQHKADQYLDALEQE 92

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE-----IKGLVRLR 264
           +V  A       V ++   G       G      K   S L+  L E         + + 
Sbjct: 93  IVHRAPLFAGRHVSQLHWGG-------GTPTYLNKAQISRLMKLLRENFQFNADAEISIE 145

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
                PR++   ++            L + VQ  +  + + +NR         +++  R 
Sbjct: 146 V---DPREIELDVLDHLRAEG--FNRLSMGVQDFNKEVQRLVNREQDEEFIFALLNHARE 200

Query: 325 VRPDIAISS-DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQV 382
           +      ++ D I G P +T + F  T+  V ++   +   F Y+       +   ++  
Sbjct: 201 I--GFTSTNIDLIYGLPKQTPESFAFTLKRVAELNPDRLSVFNYAHLPTIFAAQRKIKDA 258

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVG 411
           D     ++L  LQ+ +     S     +G
Sbjct: 259 DLPSPQQKLDILQETIAFLTQSGYQ-FIG 286


>gi|161367479|ref|NP_290492.2| coproporphyrinogen III oxidase [Escherichia coli O157:H7 str.
           EDL933]
          Length = 457

 Score = 55.7 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 44/269 (16%), Positives = 91/269 (33%), Gaps = 30/269 (11%)

Query: 157 EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS-------LSQ 209
           ED  E+  +       +R ++ ++ I   C K C FC        +  ++         +
Sbjct: 34  EDFGEQAFLQAVARYPERPLSLYVHIPF-CHKLCYFCGCNKIVTRQQHKADQYLDALEQE 92

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE-----IKGLVRLR 264
           +V  A       V ++   G       G      K   S L+  L E         + + 
Sbjct: 93  IVHRAPLFAGRHVSQLHWGG-------GTPTYLNKAQISRLMKLLRENFQFNADAEISIE 145

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
                PR++   ++            L + VQ  +  + + +NR         +++  R 
Sbjct: 146 V---DPREIELDVLDHLRAEG--FNRLSMGVQDFNKEVQRLVNREQDEEFIFALLNHARE 200

Query: 325 VRPDIAISS-DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQV 382
           +      ++ D I G P +T + F  T+  V ++   +   F Y+       +   ++  
Sbjct: 201 I--GFTSTNIDLIYGLPKQTPESFAFTLKRVAELNPDRLSVFNYAHLPTIFAAQRKIKDA 258

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVG 411
           D     ++L  LQ+ +     S     +G
Sbjct: 259 DLPSPQQKLDILQETIAFLTQSGYQ-FIG 286


>gi|153216222|ref|ZP_01950326.1| conserved hypothetical protein [Vibrio cholerae 1587]
 gi|153828817|ref|ZP_01981484.1| conserved hypothetical protein [Vibrio cholerae 623-39]
 gi|124114409|gb|EAY33229.1| conserved hypothetical protein [Vibrio cholerae 1587]
 gi|148875693|gb|EDL73828.1| conserved hypothetical protein [Vibrio cholerae 623-39]
          Length = 316

 Score = 55.7 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/124 (25%), Positives = 50/124 (40%), Gaps = 12/124 (9%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +L L +Q+  D+ LK +NR H    Y +I  + R++   I + +  IVG PGE   +   
Sbjct: 145 WLELGLQTAHDQTLKRINRGHDFACYAEITAKARAL--GIKVCTHLIVGLPGEGRTENLT 202

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDAC 409
           T+  V K+G             G+  +          KA R   L    ++Q VS     
Sbjct: 203 TLQQVLKVGTDGIKLHGLHIVEGSTMA----------KAWRAGRLTVLDQDQYVSIACEM 252

Query: 410 VGQI 413
           +   
Sbjct: 253 IRST 256


>gi|254226156|ref|ZP_04919752.1| conserved hypothetical protein [Vibrio cholerae V51]
 gi|125621324|gb|EAZ49662.1| conserved hypothetical protein [Vibrio cholerae V51]
          Length = 316

 Score = 55.7 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/124 (25%), Positives = 50/124 (40%), Gaps = 12/124 (9%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +L L +Q+  D+ LK +NR H    Y +I  + R++   I + +  IVG PGE   +   
Sbjct: 145 WLELGLQTAHDQTLKRINRGHDFACYAEITAKARAL--GIKVCTHLIVGLPGEGRTENLT 202

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDAC 409
           T+  V K+G             G+  +          KA R   L    ++Q VS     
Sbjct: 203 TLQQVLKVGTDGIKLHGLHIVEGSTMA----------KAWRAGRLTVLDQDQYVSIACEM 252

Query: 410 VGQI 413
           +   
Sbjct: 253 IRST 256


>gi|146304272|ref|YP_001191588.1| radical SAM domain-containing protein [Metallosphaera sedula DSM
           5348]
 gi|145702522|gb|ABP95664.1| Radical SAM domain protein [Metallosphaera sedula DSM 5348]
          Length = 280

 Score = 55.7 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/196 (18%), Positives = 62/196 (31%), Gaps = 18/196 (9%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C   C +C   Y   +E + S        R+L   GV    + G       G   DG+  
Sbjct: 21  CSLNCFYCGTKYISSMEGAMSPEIFEKTVRRLHSRGVKGFLVSG-------GFDRDGKLP 73

Query: 246 --TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
              F  ++  L     LV   +     R+  + +      +D    Y             
Sbjct: 74  VAPFLPVMRKLKRELNLVFNLHPGLQDRETIEEMRDVVDIVDFEFAYS-PGSYHAK---- 128

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
                R     Y + ++ +    P+  I    ++G P ++++D R  M+LV         
Sbjct: 129 ---GIRAEREAYVKTLEDLIDRGPE-YIVPHLMLGLPRDSEEDLRQEMELVSTFKPYLMN 184

Query: 364 SFKYSPRLGTPGSNML 379
                P  GTP   + 
Sbjct: 185 FLVVIPTPGTPSRALK 200


>gi|18313344|ref|NP_560011.1| hypothetical protein PAE2438 [Pyrobaculum aerophilum str. IM2]
 gi|18160871|gb|AAL64193.1| conserved hypothetical protein [Pyrobaculum aerophilum str. IM2]
          Length = 480

 Score = 55.7 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 55/334 (16%), Positives = 104/334 (31%), Gaps = 49/334 (14%)

Query: 122 PIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFE---RLSIVDGGYNRKRGVTA 178
              +V+   +       L+E    G+ V    Y          R +      + +R   A
Sbjct: 118 EFADVIAVGELEPLWDSLIEYMTTGEEVEGLYYPQRGPHPVKIRHAENWSAADYRRIPEA 177

Query: 179 ------FLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNV 232
                  + +  GC   C FC+  Y       R    V+ EA  L        +L+    
Sbjct: 178 EAAFSLSVELARGCPYSCLFCMESYISKPYRPRDWGAVLQEAAWLYRKYGIRPSLVALTA 237

Query: 233 NAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLH 292
           +A R          F +LL     ++  ++L   +     + D  ++    L      + 
Sbjct: 238 SAHR---------HFKELLSE--AVRQKLQLSIPSLRAELLDDETLELIAQLGQ--RTIT 284

Query: 293 LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352
           +  +S S+R+ K++ +  +  E  +I+ +   +   + +    +VG P E D D +    
Sbjct: 285 IAPES-SERLRKALGKDISDGEIIRIVRKAAEL--GMRVKLYLLVGVPCERDGDVQDLKR 341

Query: 353 LVDKIG----YAQAFSFKYSPRLGTPGSNML-EQVDENVKAERLLC-------------L 394
           L+ +      Y         P+  TP        +    KA R +              L
Sbjct: 342 LLAEAKKTGAYLYVSVNPLVPKPQTPLQYHPMAPIPYLKKAIRAVEESPHDAFSHYDPVL 401

Query: 395 QKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL 428
                   +       G+ + V IE        L
Sbjct: 402 AAIQAAISLG------GREVSVHIENSAASNAPL 429


>gi|323964214|gb|EGB59697.1| oxygen-independent coproporphyrinogen III oxidase [Escherichia coli
           M863]
 gi|327250495|gb|EGE62203.1| oxygen-independent coproporphyrinogen III oxidase [Escherichia coli
           STEC_7v]
          Length = 457

 Score = 55.7 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 44/269 (16%), Positives = 91/269 (33%), Gaps = 30/269 (11%)

Query: 157 EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS-------LSQ 209
           ED  E+  +       +R ++ ++ I   C K C FC        +  ++         +
Sbjct: 34  EDFGEQAFLQAVARYPERPLSLYVHIPF-CHKLCYFCGCNKIVTRQQHKADQYLDALEQE 92

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE-----IKGLVRLR 264
           +V  A       V ++   G       G      K   S L+  L E         + + 
Sbjct: 93  IVHRAPLFAGRHVSQLHWGG-------GTPTYLNKAQISRLMKLLRENFQFNADAEISIE 145

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
                PR++   ++            L + VQ  +  + + +NR         +++  R 
Sbjct: 146 V---DPREIELDVLDHLRAEG--FNRLSMGVQDFNKEVQRLVNREQDEEFIFALLNHARE 200

Query: 325 VRPDIAISS-DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQV 382
           +      ++ D I G P +T + F  T+  V ++   +   F Y+       +   ++  
Sbjct: 201 I--GFTSTNIDLIYGLPKQTPESFAFTLKRVAELNPDRLSVFNYAHLPTIFAAQRKIKDA 258

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVG 411
           D     ++L  LQ+ +     S     +G
Sbjct: 259 DLPSPQQKLDILQETIAFLTQSGYQ-FIG 286


>gi|317122992|ref|YP_004102995.1| oxygen-independent coproporphyrinogen III oxidase [Thermaerobacter
           marianensis DSM 12885]
 gi|315592972|gb|ADU52268.1| oxygen-independent coproporphyrinogen III oxidase [Thermaerobacter
           marianensis DSM 12885]
          Length = 431

 Score = 55.7 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 38/205 (18%), Positives = 69/205 (33%), Gaps = 21/205 (10%)

Query: 186 CDKFCTFCVV-PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQN--VNAWRGKGLDG 242
           C + C +C    Y    E             + +     E+ LL  +  +         G
Sbjct: 62  CRQRCYYCDFNTYLLDPE----------GKARYLAALQRELALLATDPGLTRPLVSVYVG 111

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLI-------KAHGDLDVLMPYLHLPV 295
                      L  + G V   +  +   +++           +     D  +  L L +
Sbjct: 112 GGTPSILEPAELERLLGAVHRHFCLAPDAEITVECNPGTLDEGRLAALRDGGVTRLSLGL 171

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
           Q+  D +L++M R HT  ++     R+R    D  ++ D I G PG+T D + A++  V 
Sbjct: 172 QAVQDELLRAMGRDHTWADFCATYRRVRQAGFD-NVNIDLIFGLPGQTLDQWEASLRAVV 230

Query: 356 KIGYAQAFSFKYSPRLGTPGSNMLE 380
            +       +      GTP     E
Sbjct: 231 DLDPEHVSCYGLELHPGTPFHRWWE 255


>gi|215406574|emb|CAT00705.1| CDK5 regulatory subunit associated protein 1-like 1 [Mus
          musculus]
 gi|215406579|emb|CAT00713.1| CDK5 regulatory subunit associated protein 1-like 1 [Mus
          musculus]
          Length = 96

 Score = 55.7 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 9/45 (20%), Positives = 20/45 (44%), Gaps = 2/45 (4%)

Query: 16 QIVDQCIVP--QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNS 58
          +      +P  Q+ +++++GC  N  D   M     + GY+   +
Sbjct: 52 RPPSDSTIPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITEN 96


>gi|160902226|ref|YP_001567807.1| putative radical SAM protein [Petrotoga mobilis SJ95]
 gi|160359870|gb|ABX31484.1| conserved hypothetical radical SAM protein [Petrotoga mobilis SJ95]
          Length = 304

 Score = 55.7 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/210 (16%), Positives = 70/210 (33%), Gaps = 13/210 (6%)

Query: 175 GVTAFLTIQEGCDKFCTFCVVP----YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQ 230
           G T      E     C +C +          ++S    QV +   +        +     
Sbjct: 27  GFTCPNKTGERGKGGCIYCDLTGSGFAAFKPKVSIE-EQVKEMINRYEKKANKFLAYFQA 85

Query: 231 NVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY 290
           N N +       EK   + +   +  +    R              L+K   D   +  Y
Sbjct: 86  NTNTYAPVDELKEKYESALIDDRIVGLDVSTRPDCVPDEVIT----LLKTFKD--RVDVY 139

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
           + L V+S +   LK MNR H+  E    ++R++    ++ +   +I+ FP +T +D +  
Sbjct: 140 VELGVESTNPNTLKYMNRGHSLAEVIDSVNRLKKA--ELEVILHYIIDFPCDTLEDVKEM 197

Query: 351 MDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
             +   +               T  +++ +
Sbjct: 198 AKVSSALKVDGVKLHSLYIVENTKLADLYK 227


>gi|110644206|ref|YP_671936.1| coproporphyrinogen III oxidase [Escherichia coli 536]
 gi|191173864|ref|ZP_03035384.1| oxygen-independent coproporphyrinogen III oxidase [Escherichia coli
           F11]
 gi|300985892|ref|ZP_07177628.1| oxygen-independent coproporphyrinogen III oxidase [Escherichia coli
           MS 200-1]
 gi|110345798|gb|ABG72035.1| oxygen-independent coproporphyrinogen III oxidase [Escherichia coli
           536]
 gi|190905822|gb|EDV65441.1| oxygen-independent coproporphyrinogen III oxidase [Escherichia coli
           F11]
 gi|300306493|gb|EFJ61013.1| oxygen-independent coproporphyrinogen III oxidase [Escherichia coli
           MS 200-1]
 gi|324012568|gb|EGB81787.1| oxygen-independent coproporphyrinogen III oxidase [Escherichia coli
           MS 60-1]
          Length = 457

 Score = 55.7 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 44/269 (16%), Positives = 91/269 (33%), Gaps = 30/269 (11%)

Query: 157 EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS-------LSQ 209
           ED  E+  +       +R ++ ++ I   C K C FC        +  ++         +
Sbjct: 34  EDFGEQAFLQAVARYPERPLSLYVHIPF-CHKLCYFCGCNKIVTRQQHKADQYLDALEQE 92

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE-----IKGLVRLR 264
           +V  A       V ++   G       G      K   S L+  L E         + + 
Sbjct: 93  IVHRAPLFAGRHVSQLHWGG-------GTPTYLNKAQISRLMKLLRENFQFNADAEISIE 145

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
                PR++   ++            L + VQ  +  + + +NR         +++  R 
Sbjct: 146 V---DPREIELDVLDHLRAEG--FNRLSMGVQDFNKEVQRLVNREQDEEFIFALLNHARE 200

Query: 325 VRPDIAISS-DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQV 382
           +      ++ D I G P +T + F  T+  V ++   +   F Y+       +   ++  
Sbjct: 201 I--GFTSTNIDLIYGLPKQTPESFAFTLKRVAELNPDRLSVFNYAHLPTIFAAQRKIKDA 258

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVG 411
           D     ++L  LQ+ +     S     +G
Sbjct: 259 DLPSPQQKLDILQETIAFLTQSGYQ-FIG 286


>gi|327484872|gb|AEA79279.1| Predicted Fe-S oxidoreductase [Vibrio cholerae LMA3894-4]
          Length = 312

 Score = 55.7 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/124 (25%), Positives = 50/124 (40%), Gaps = 12/124 (9%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +L L +Q+  D+ LK +NR H    Y +I  + R++   I + +  IVG PGE   +   
Sbjct: 141 WLELGLQTAHDQTLKRINRGHDFACYAEITAKARAL--GIKVCTHLIVGLPGEGRTENLT 198

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDAC 409
           T+  V K+G             G+  +          KA R   L    ++Q VS     
Sbjct: 199 TLQQVLKVGTDGIKLHGLHIVEGSTMA----------KAWRAGRLTVLDQDQYVSIACEM 248

Query: 410 VGQI 413
           +   
Sbjct: 249 IRST 252


>gi|326330114|ref|ZP_08196425.1| lipoyl synthase [Nocardioidaceae bacterium Broad-1]
 gi|325951927|gb|EGD43956.1| lipoyl synthase [Nocardioidaceae bacterium Broad-1]
          Length = 320

 Score = 55.7 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 37/216 (17%), Positives = 70/216 (32%), Gaps = 18/216 (8%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC +    G        +    A  +   G+   T+ G      R    DG   
Sbjct: 83  CTRRCDFCQI--DTGKPTDLDRDEPRRVAESVQTMGLKYATITGV----ARDDLADGGAW 136

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
            +++ +  + E+     +         + + L +       ++ +    V     RI K 
Sbjct: 137 LYAETVKQIHELNPETGVENLIPDFNGIPELLEEVFESRPEVLAHNVETV----PRIFKR 192

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           +           +I + R     +   S+ I+G  GET ++    +  +   G       
Sbjct: 193 IRPAFRYERSLDVITQARDF--GLVTKSNLILGM-GETREEVSEALRDLHAAGCELITIT 249

Query: 366 KYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQ 401
           +Y  R     S     V+  VK E  + LQ +  E 
Sbjct: 250 QYL-RP----SVRHHPVERWVKPEEFIELQAEAEEI 280


>gi|303247899|ref|ZP_07334167.1| Radical SAM domain protein [Desulfovibrio fructosovorans JJ]
 gi|302490800|gb|EFL50701.1| Radical SAM domain protein [Desulfovibrio fructosovorans JJ]
          Length = 501

 Score = 55.7 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 54/260 (20%), Positives = 89/260 (34%), Gaps = 26/260 (10%)

Query: 130 PQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKF 189
           P  +      +   R G  V  T  ++ ++F     V     R   V        GC   
Sbjct: 171 PPDWSHEEHYIWDDRAGGIVALTP-AITERFLAGGTVSKMLGR---VGYQTMTGRGCPHR 226

Query: 190 CTFCV---VPYTRGI---EISRSLSQVV-DEARKLIDNGVCEITLLGQNVNAWRGKGLDG 242
           C +CV   +    G       RS+S V+ + A             +  +    R      
Sbjct: 227 CAYCVNDAIKSLYGAKGYLRWRSVSHVMDELAEARRIMPFIGYVWISDDAFFAR------ 280

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTS-HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
                 ++       K  V L +T    P  ++   + A  D  ++  YL + VQ+GS R
Sbjct: 281 ---PLEEIRDFCKAWKERVALPFTCLGSPATITREKMDALVDAGMI--YLQMGVQTGSPR 335

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPD--IAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
           I +  NR+    +      RI +   D  +  S DFI+  P ET  D   ++  + +I  
Sbjct: 336 IQELFNRKAMGNDKMLAAMRIINSYKDRLLPPSYDFILDTPYETVKDRLDSIRFIARIPK 395

Query: 360 A-QAFSFKYSPRLGTPGSNM 378
             +   F      GT  + M
Sbjct: 396 PFRLQPFSLVLYPGTKLAAM 415


>gi|261823705|ref|YP_003261811.1| coproporphyrinogen III oxidase [Pectobacterium wasabiae WPP163]
 gi|261607718|gb|ACX90204.1| oxygen-independent coproporphyrinogen III oxidase [Pectobacterium
           wasabiae WPP163]
          Length = 457

 Score = 55.7 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 45/248 (18%), Positives = 94/248 (37%), Gaps = 20/248 (8%)

Query: 173 KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNV 232
           +R ++ ++ I   C + C FC        +  +   + +D     I         +G+ V
Sbjct: 50  QRPLSLYIHIPF-CHRLCYFCGCNKLVTRQQHK-ADEYLDVLELEIRQ--RAPLFVGRTV 105

Query: 233 NAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL----- 287
                 G  G     + +   +S +  L+R  ++ S   ++S  +     +LDVL     
Sbjct: 106 TQLHWGG--GTPTYLNKV--QISRLMSLLRELFSFSEQAELSLEVDPREIELDVLDHLRA 161

Query: 288 --MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS-DFIVGFPGETD 344
                L + VQ  +  + K +NR         +I+R +++      ++ D I G P +T 
Sbjct: 162 EGFNRLSMGVQDFNKDVQKLVNREQDEDFIFALIERAKAL--GFTSTNIDLIYGLPKQTP 219

Query: 345 DDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQV 403
           + F  T+  V ++   +   F Y+       +   ++  D     ++L  LQ+ +     
Sbjct: 220 ESFAFTLQRVAELSPHRLSVFNYAHLPSLFAAQRKIKDADLPSAEQKLDILQQTIGSLTQ 279

Query: 404 SFNDACVG 411
           S     +G
Sbjct: 280 SGYQ-FIG 286


>gi|261822399|ref|YP_003260505.1| lipoyl synthase [Pectobacterium wasabiae WPP163]
 gi|261606412|gb|ACX88898.1| lipoic acid synthetase [Pectobacterium wasabiae WPP163]
          Length = 321

 Score = 55.7 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/183 (17%), Positives = 67/183 (36%), Gaps = 12/183 (6%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V    G  ++   ++    A+ + D G+  + +   +    R    DG   
Sbjct: 94  CTRRCPFCDV--AHGRPLTPDANEPEKLAQTIHDMGLRYVVITSVD----RDDLRDGGAQ 147

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAH-GDLDVLMPYLHLPVQSGSDRILK 304
            F+D + ++      +R+       R   D  ++        +  +    V     R+ +
Sbjct: 148 HFADCISAIRRKNPQIRIETLVPDFRGRMDRALEILTATPPDVFNHNLENV----PRVYR 203

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
            +          ++++  +S  PDI   S  +VG  GET+ +    M  + + G      
Sbjct: 204 QVRPGANYEWSLKLLENFKSAHPDIPTKSGLMVGL-GETNAEIVEVMRDLRRHGVTMLTL 262

Query: 365 FKY 367
            +Y
Sbjct: 263 GQY 265


>gi|167855128|ref|ZP_02477900.1| oxygen-independent coproporphyrinogen III oxidase [Haemophilus
           parasuis 29755]
 gi|167853763|gb|EDS25005.1| oxygen-independent coproporphyrinogen III oxidase [Haemophilus
           parasuis 29755]
          Length = 455

 Score = 55.7 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 46/241 (19%), Positives = 83/241 (34%), Gaps = 31/241 (12%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C K C FC         I+R   +V      L         L           G  G   
Sbjct: 60  CHKLCYFC----ACNKIITRHQHKVDIYLDYLEKEIKYRADLFKDRTVTQIHWG--GGTP 113

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL-------MPYLHLPVQSG 298
           T+ D   SL  +  ++R  +      ++S  +     +L++L          + + +Q  
Sbjct: 114 TYLDEEQSL-RLMAMLRKHFNVIDDAEISIEMDPREIELEMLDHLREIGFNRISMGIQDF 172

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS-DFIVGFPGETDDDFRATMDLVDKI 357
           +  + K +NR         ++ R R +      ++ D I G P +T + F  T+D V ++
Sbjct: 173 NKEVQKLVNREQDEEFIFSLMKRAREL--GFTSTNIDLIYGLPKQTVESFMFTLDRVIEL 230

Query: 358 GYAQAFSFKYSPRLGTPGSNMLEQVDENVKAE-------RLLCLQKKLREQQVSFNDACV 410
              +   F Y+       S    Q+   +K E       +L  LQK +     +     +
Sbjct: 231 NPDRMSVFNYAHLP----SRFAAQI--KIKDEMLPAPETKLEILQKTIETLGNAGYK-FI 283

Query: 411 G 411
           G
Sbjct: 284 G 284


>gi|153802020|ref|ZP_01956606.1| conserved hypothetical protein [Vibrio cholerae MZO-3]
 gi|124122430|gb|EAY41173.1| conserved hypothetical protein [Vibrio cholerae MZO-3]
          Length = 316

 Score = 55.7 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/124 (25%), Positives = 50/124 (40%), Gaps = 12/124 (9%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +L L +Q+  D+ LK +NR H    Y +I  + R++   I + +  IVG PGE   +   
Sbjct: 145 WLELGLQTAHDQTLKRINRGHDFACYAEITAKARAL--GIKVCTHLIVGLPGEGRTENLT 202

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDAC 409
           T+  V K+G             G+  +          KA R   L    ++Q VS     
Sbjct: 203 TLQQVLKVGTDGIKLHGLHIVEGSTMA----------KAWRAGRLTVLDQDQYVSIACEM 252

Query: 410 VGQI 413
           +   
Sbjct: 253 IRST 256


>gi|148236545|ref|NP_001085534.1| lipoyl synthase, mitochondrial [Xenopus laevis]
 gi|82184566|sp|Q6GQ48|LIAS_XENLA RecName: Full=Lipoyl synthase, mitochondrial; AltName: Full=Lipoate
           synthase; Short=LS; Short=Lip-syn; AltName: Full=Lipoic
           acid synthase; Flags: Precursor
 gi|49117964|gb|AAH72900.1| MGC80349 protein [Xenopus laevis]
          Length = 372

 Score = 55.7 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/183 (17%), Positives = 68/183 (37%), Gaps = 9/183 (4%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V   R         +  + ++ + + G+  + L   +    R    DG   
Sbjct: 137 CTRGCRFCSVKTARNPP-PLDPDEPYNTSKAIAEWGLDYVVLTSVD----RDDISDGGAE 191

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
             +  +  L E    + +   T   R  +   ++      + + Y H  V++        
Sbjct: 192 HIAQTVSMLKERNKTILIECLTPDFRG-NMKAVETVAKSGLDV-YAH-NVETVPALQRHV 248

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
            + R    +   ++   ++VRPD+   +  ++G  GETD+   +TM  + + G       
Sbjct: 249 RDPRANFDQSLNVLKHAKNVRPDLVSKTSIMLGL-GETDEQIYSTMKALREAGVDCLTLG 307

Query: 366 KYS 368
           +Y 
Sbjct: 308 QYM 310


>gi|88855044|ref|ZP_01129709.1| oxygen-independent coproporphyrinogen III oxidase protein [marine
           actinobacterium PHSC20C1]
 gi|88815572|gb|EAR25429.1| oxygen-independent coproporphyrinogen III oxidase protein [marine
           actinobacterium PHSC20C1]
          Length = 416

 Score = 55.7 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 40/217 (18%), Positives = 68/217 (31%), Gaps = 22/217 (10%)

Query: 172 RKRGVTAFLTIQEGCDKFCTFC-----VVPYTRGIEIS-RSLSQVVDEARKLIDNGVCEI 225
           R   V   +     C   C +C          RG + S  +   +   A   + +GV  +
Sbjct: 28  RPWSVYIHVPF---CRVRCGYCDFNTYTSEELRGAKRSDYATEAI---AEMSLASGV--L 79

Query: 226 TLLGQNVNAWRGKGLDGEKCTFS---DLLYSLSEIK---GLVRLRYTTSHPRDMSDCLIK 279
              G  +         G   T     DL   L+  +   G       T+     S     
Sbjct: 80  AQAGVALREASTVFFGGGTPTLLPVTDLTRMLTAARETWGFTSDVEVTTEANPDSVDREY 139

Query: 280 AHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGF 339
                D     +   +QS    +L ++ R H       ++   R V   + +S D I G 
Sbjct: 140 LLALKDAGFTRVSFGMQSAVPHVLATLERTHDPERVPHVVKWAREV--GLDVSLDLIYGT 197

Query: 340 PGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
           PGE+  D+  ++D V         ++      GT  +
Sbjct: 198 PGESLADWERSLDHVISQNPDHVSAYALIIETGTKLA 234


>gi|330469604|ref|YP_004407347.1| oxygen-independent coproporphyrinogen III oxidase [Verrucosispora
           maris AB-18-032]
 gi|328812575|gb|AEB46747.1| oxygen-independent coproporphyrinogen III oxidase [Verrucosispora
           maris AB-18-032]
          Length = 409

 Score = 55.7 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 75/226 (33%), Gaps = 32/226 (14%)

Query: 186 CDKFCTFC----VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD 241
           C   C +C          G   SR        A  ++        +LG            
Sbjct: 41  CASRCGYCDFNTYTAQELGGGASRD-----GYADTVLAELALAARVLGDRPPRRVETVFV 95

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMP------------ 289
           G           L+ I   +   +  +   +++        + + + P            
Sbjct: 96  GGGTPTLLPADDLARILDAIDRTWGLAADAEVTTE-----ANPESVTPASLKELRAAGYT 150

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
            + L +QS +  +L  ++RRH+A          R    D  ++ D I G PGE  +DF A
Sbjct: 151 RISLGMQSVAPGVLAVLDRRHSAGRATAAALEARDAGFD-HVNLDLIYGTPGEQPEDFAA 209

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTP-GSNM----LEQVDENVKAER 390
           ++D V   G     ++      GT   + M    L   D++V A+R
Sbjct: 210 SLDQVVAAGADHVSAYALIVEDGTRLAARMRRGELPYPDDDVAADR 255


>gi|239941114|ref|ZP_04693051.1| hypothetical protein SrosN15_08975 [Streptomyces roseosporus NRRL
           15998]
 gi|239987592|ref|ZP_04708256.1| hypothetical protein SrosN1_09834 [Streptomyces roseosporus NRRL
           11379]
 gi|291444554|ref|ZP_06583944.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
           15998]
 gi|291347501|gb|EFE74405.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
           15998]
          Length = 642

 Score = 55.7 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 73/419 (17%), Positives = 125/419 (29%), Gaps = 74/419 (17%)

Query: 52  GYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVV----VAG 107
           G+   N    AD I    C +     + V      IR  K      G D ++       G
Sbjct: 150 GHAAFNPEPIADFI---DCAVVGDGEQAVLEITEIIRAWKAEGRPGGRDEVLFRLSKTGG 206

Query: 108 CVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVD 167
                  +        +  VV  ++                V+D D     K   + + +
Sbjct: 207 VYVPRFYDVEYLPDGRIGRVVPNRSGVPWR------VSKHTVMDLDEWPYPKQPLVPLAE 260

Query: 168 GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEIT 226
             + R       + I  GC + C FC           RS++ + +   K +   G  E+ 
Sbjct: 261 TVHERMS-----VEIFRGCTRGCRFCQAGMITRPVRERSITGIGEMVDKGLKATGFEEVG 315

Query: 227 LLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV 286
           LL     +       G+        Y+  +I     L   ++     +  L         
Sbjct: 316 LLS---LSSADHSEIGDIAKGLADRYTDDKIG----LSLPSTRVDAFNVDLANELTRNGR 368

Query: 287 LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR-----IRSVRPDIAISSDFIVGFPG 341
               L    + GS+R+ K +N+  +  +  + +        R V+        F+ G P 
Sbjct: 369 -RSGLTFAPEGGSERMRKVINKMVSEEDLIRTVATAYGNGWRQVK------LYFMCGLPT 421

Query: 342 ETDDDFRATMDLV-------------DKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           ETD+D     D+              + I         + P+  TP      Q+      
Sbjct: 422 ETDEDVLQIGDMAVNVIAKGREVSGQNDIRCT-VSIGGFVPKPHTP-FQWAPQLSAEDTD 479

Query: 389 ERLLCLQKKLR---------------------EQQVSFNDACVGQIIEVLIEKHGKEKG 426
            RL  L+ K+R                     E  +S  D  VG +I  + E  G+  G
Sbjct: 480 ARLKKLRDKIRGDKKYGRSIGFRYHDGKPGIVEGLLSRGDRRVGSVIRAVYESGGRFDG 538


>gi|229528637|ref|ZP_04418027.1| hypothetical protein VCG_001723 [Vibrio cholerae 12129(1)]
 gi|229332411|gb|EEN97897.1| hypothetical protein VCG_001723 [Vibrio cholerae 12129(1)]
          Length = 316

 Score = 55.7 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/124 (25%), Positives = 50/124 (40%), Gaps = 12/124 (9%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +L L +Q+  D+ LK +NR H    Y +I  + R++   I + +  IVG PGE   +   
Sbjct: 145 WLELGLQTAHDQTLKRINRGHDFACYAEITAKARAL--GIKVCTHLIVGLPGEGRTENLT 202

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDAC 409
           T+  V K+G             G+  +          KA R   L    ++Q VS     
Sbjct: 203 TLQQVLKVGTDGIKLHGLHIVEGSTMA----------KAWRAGRLTVLDQDQYVSIACEM 252

Query: 410 VGQI 413
           +   
Sbjct: 253 IRST 256


>gi|70727029|ref|YP_253943.1| lipoyl synthase [Staphylococcus haemolyticus JCSC1435]
 gi|68447753|dbj|BAE05337.1| lipoic acid synthetase [Staphylococcus haemolyticus JCSC1435]
          Length = 308

 Score = 55.7 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 42/259 (16%), Positives = 91/259 (35%), Gaps = 20/259 (7%)

Query: 109 VAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDG 168
           V   + EEILR+   + + +     Y   + + R +         ++V ++ +  +I + 
Sbjct: 2   VMATKNEEILRKPDWLKIKLNTNENYIGLKKMMREKN-------LHTVCEEAKCPNIHEC 54

Query: 169 GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLL 228
              R+     F+ +   C + C FC V      E+   L++    A  +    +  + + 
Sbjct: 55  WGARR--TATFMILGAVCTRACRFCAVKTGLPNEL--DLNEPERVAESVELMNLKHVVIT 110

Query: 229 GQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLM 288
                  R    D     +++ +  + E      +    S      + L         ++
Sbjct: 111 AV----ARDDLRDAGSNVYAETVRKVRERNPFTTIEILPSDMGGDYEALETLMASKPDIL 166

Query: 289 PYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFR 348
            +    V+  +      +  R T     + + R + ++PDI   S  +VG  GET ++  
Sbjct: 167 NHNIETVRRLTP----RVRARATYERTLEFLRRSKELQPDIPTKSSLMVGL-GETIEEIY 221

Query: 349 ATMDLVDKIGYAQAFSFKY 367
            TMD +           +Y
Sbjct: 222 ETMDDLRANDVDILTIGQY 240


>gi|254039079|ref|ZP_04873129.1| O2-independent coproporphyrinogen III oxidase [Escherichia sp.
           1_1_43]
 gi|332282743|ref|ZP_08395156.1| O2-independent coproporphyrinogen III oxidase [Shigella sp. D9]
 gi|13364265|dbj|BAB38212.1| O2-independent coproporphyrinogen III oxidase [Escherichia coli
           O157:H7 str. Sakai]
 gi|73857849|gb|AAZ90556.1| O2-independent coproporphyrinogen III oxidase [Shigella sonnei
           Ss046]
 gi|81247622|gb|ABB68330.1| O2-independent coproporphyrinogen III oxidase [Shigella boydii
           Sb227]
 gi|209752808|gb|ACI74711.1| response regulator for gln GlnG [Escherichia coli]
 gi|209752810|gb|ACI74712.1| response regulator for gln GlnG [Escherichia coli]
 gi|209752814|gb|ACI74714.1| response regulator for gln GlnG [Escherichia coli]
 gi|209752816|gb|ACI74715.1| response regulator for gln GlnG [Escherichia coli]
 gi|226838515|gb|EEH70544.1| O2-independent coproporphyrinogen III oxidase [Escherichia sp.
           1_1_43]
 gi|332105095|gb|EGJ08441.1| O2-independent coproporphyrinogen III oxidase [Shigella sp. D9]
          Length = 459

 Score = 55.7 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 44/269 (16%), Positives = 91/269 (33%), Gaps = 30/269 (11%)

Query: 157 EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS-------LSQ 209
           ED  E+  +       +R ++ ++ I   C K C FC        +  ++         +
Sbjct: 36  EDFGEQAFLQAVARYPERPLSLYVHIPF-CHKLCYFCGCNKIVTRQQHKADQYLDALEQE 94

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE-----IKGLVRLR 264
           +V  A       V ++   G       G      K   S L+  L E         + + 
Sbjct: 95  IVHRAPLFAGRHVSQLHWGG-------GTPTYLNKAQISRLMKLLRENFQFNADAEISIE 147

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
                PR++   ++            L + VQ  +  + + +NR         +++  R 
Sbjct: 148 V---DPREIELDVLDHLRAEG--FNRLSMGVQDFNKEVQRLVNREQDEEFIFALLNHARE 202

Query: 325 VRPDIAISS-DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQV 382
           +      ++ D I G P +T + F  T+  V ++   +   F Y+       +   ++  
Sbjct: 203 I--GFTSTNIDLIYGLPKQTPESFAFTLKRVAELNPDRLSVFNYAHLPTIFAAQRKIKDA 260

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVG 411
           D     ++L  LQ+ +     S     +G
Sbjct: 261 DLPSPQQKLDILQETIAFLTQSGYQ-FIG 288


>gi|332084076|gb|EGI89281.1| oxygen-independent coproporphyrinogen III oxidase [Shigella boydii
           5216-82]
          Length = 457

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 44/269 (16%), Positives = 91/269 (33%), Gaps = 30/269 (11%)

Query: 157 EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS-------LSQ 209
           ED  E+  +       +R ++ ++ I   C K C FC        +  ++         +
Sbjct: 34  EDFGEQAFLQAVARYPERPLSLYVHIPF-CHKLCYFCGCNKIVTRQQHKADQYLDALEQE 92

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE-----IKGLVRLR 264
           +V  A       V ++   G       G      K   S L+  L E         + + 
Sbjct: 93  IVHRAPLFAGRHVSQLHWGG-------GTPTYLNKAQISRLMKLLRENFQFNADAEISIE 145

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
                PR++   ++            L + VQ  +  + + +NR         +++  R 
Sbjct: 146 V---DPREIELDVLDHLRAEG--FNRLSMGVQDFNKEVQRLVNREQDEEFIFALLNHARE 200

Query: 325 VRPDIAISS-DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQV 382
           +      ++ D I G P +T + F  T+  V ++   +   F Y+       +   ++  
Sbjct: 201 I--GFTSTNIDLIYGLPKQTPESFAFTLKRVAELNPDRLSVFNYAHLPTIFAAQRKIKDA 258

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVG 411
           D     ++L  LQ+ +     S     +G
Sbjct: 259 DLPSPQQKLDILQETIAFLTQSGYQ-FIG 286


>gi|331001514|ref|ZP_08325132.1| lipoyl synthase [Parasutterella excrementihominis YIT 11859]
 gi|329568243|gb|EGG50060.1| lipoyl synthase [Parasutterella excrementihominis YIT 11859]
          Length = 322

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/195 (15%), Positives = 60/195 (30%), Gaps = 12/195 (6%)

Query: 174 RGVTAFLTIQ-EGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNV 232
            G  A   I    C + C FC + +     +     +    A      G+  + +   + 
Sbjct: 73  NGKRATFLIMGNICTRRCPFCDIAHGYPDPL--DPDEPKRLAEAAKTLGLKYVVITSVD- 129

Query: 233 NAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLH 292
              R    DG    F+  ++ L + +G+            +   + +       +  +  
Sbjct: 130 ---RDDLKDGGASHFAKCVHELRKQEGVKVEILVPDFRGRVERAIDELLSAPPDVFNHNI 186

Query: 293 LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352
             V     R+ K             ++       P I   S  +VG  GETDD+    M 
Sbjct: 187 ETV----PRLYKEARPGGNYLHSLNLLKTWSERSPSIPTKSGLMVGL-GETDDEVFEVMK 241

Query: 353 LVDKIGYAQAFSFKY 367
            + + G +     +Y
Sbjct: 242 ELREHGVSMLTIGQY 256


>gi|319778858|ref|YP_004129771.1| Lipoate synthase [Taylorella equigenitalis MCE9]
 gi|317108882|gb|ADU91628.1| Lipoate synthase [Taylorella equigenitalis MCE9]
          Length = 328

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 35/210 (16%), Positives = 73/210 (34%), Gaps = 16/210 (7%)

Query: 161 ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS--QVVDEARKLI 218
           E  S  + G    RG   F+ + + C + C FC V + R       L   +  + A+ + 
Sbjct: 74  EEASCPNIGECFGRGTATFMIMGDKCTRRCPFCDVGHGRPD----PLDTCEPHNLAQSIA 129

Query: 219 DNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLI 278
             G+  + +   +    R    DG    + D +  +       ++       R   +  +
Sbjct: 130 RMGLSYVVITSVD----RDDLRDGGAQHYVDCINEIRNQSPKTKIEVLVPDFRGRLERAL 185

Query: 279 KAHGD-LDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIV 337
                 L  +M +    V     R+ K            +++   +++ PD+   S  +V
Sbjct: 186 DIFSKGLPDVMNHNLETV----PRLYKQARPGADYLHSLKLLKNFKTLYPDVPTKSGLMV 241

Query: 338 GFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           G  GE+D++    M  + +         +Y
Sbjct: 242 GL-GESDEEILDVMMDMREHNIDMLTIGQY 270


>gi|302545433|ref|ZP_07297775.1| radical SAM domain protein [Streptomyces hygroscopicus ATCC 53653]
 gi|302463051|gb|EFL26144.1| radical SAM domain protein [Streptomyces himastatinicus ATCC 53653]
          Length = 653

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 74/420 (17%), Positives = 130/420 (30%), Gaps = 76/420 (18%)

Query: 52  GYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVV----VAG 107
           G+   N    AD I    C +     + V      IR  K      G D L+        
Sbjct: 162 GHAAFNPEPIADFI---DCAVIGDGEQAVLEMTEIIRAWKAEGRPGGRDELLFRLARTGS 218

Query: 108 CVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVD 167
                  +        ++ VV  ++                V+D D     K   + + +
Sbjct: 219 IYVPKFYDVEYLADGRISRVVPNRSGVPWR------VSKHTVMDLDEWPYPKQPLVPLAE 272

Query: 168 GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEIT 226
             + R       + I  GC + C FC           RS++ + +   K + N G  E+ 
Sbjct: 273 TVHERMS-----VEIFRGCTRGCRFCQAGMITRPVRERSITGIGEMVDKGLKNTGFEEVG 327

Query: 227 LLGQNVNAWRGKGLDGEKCTFSDLLYSLSE--IKGLVRLRYTTSHPRDMSDCLIKAHGDL 284
           LL  +       G         D+   L++   +  + L   ++     +  L       
Sbjct: 328 LLSLSSADHTEIG---------DIAKGLADRYTEDKIGLSLPSTRVDAFNIDLANELTRN 378

Query: 285 DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR-----IRSVRPDIAISSDFIVGF 339
                 L    + GS+RI K +N+  +  +  + +        R V+        F+ G 
Sbjct: 379 GR-RSGLTFAPEGGSERIRKVINKMVSEEDLIRTVSTAYGNGWRQVK------LYFMCGL 431

Query: 340 PGETDDDFRATMDLVDKI---------GYAQAFSF---KYSPRLGTPGSNMLEQVDENVK 387
           P ETD+D     D+  K+               +     + P+  TP      Q+     
Sbjct: 432 PTETDEDVLQIADMATKVIAKGREVSGKNDIRCTVSIGGFVPKPHTP-FQWAPQLSAEDT 490

Query: 388 AERLLCLQKKLR---------------------EQQVSFNDACVGQIIEVLIEKHGKEKG 426
             RL  L++++R                     E  +S  D  VG +I  + E  G+  G
Sbjct: 491 DARLEKLRERIRGDKKYGRSIGFRYHDGKPGIVEGLLSRGDRRVGAVIRAVYEDGGRFDG 550


>gi|238752591|ref|ZP_04614064.1| Lipoyl synthase [Yersinia rohdei ATCC 43380]
 gi|238709182|gb|EEQ01427.1| Lipoyl synthase [Yersinia rohdei ATCC 43380]
          Length = 321

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 43/257 (16%), Positives = 86/257 (33%), Gaps = 17/257 (6%)

Query: 118 LRRSPIVNVVVGPQTYYRLPELLERAR-------FGKRVVDTDYSVEDKFERLSIVDGGY 170
           +   PI  VV   Q   R PE ++           G +       +    E  S  +   
Sbjct: 19  MALIPIKTVVTERQELLRKPEWMKIKLPADSSRIQGIKAAMRKNGLHSVCEEASCPNLSE 78

Query: 171 NRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQ 230
               G   F+ +   C + C FC V    G  ++   ++    A+ + D G+  + +   
Sbjct: 79  CFNHGTATFMILGAICTRRCPFCDV--AHGRPVTPDANEPEKLAQTIKDMGLRYVVITSV 136

Query: 231 NVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY 290
           +    R    DG    F+D + ++      +++       R   D  +          P 
Sbjct: 137 D----RDDLRDGGAQHFADCIAAIRAKNPTIKIETLVPDFRGRMDRALDILTVTP---PD 189

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
           +         R+ + +          ++++R +   P+I   S  +VG  GET+ +    
Sbjct: 190 VFNHNLENVPRVYRQVRPGANYEWSLKLLERFKEAHPEIPTKSGLMVGL-GETNAEIVEV 248

Query: 351 MDLVDKIGYAQAFSFKY 367
           M  + + G       +Y
Sbjct: 249 MRDLRRHGVTMLTLGQY 265


>gi|209752812|gb|ACI74713.1| response regulator for gln GlnG [Escherichia coli]
          Length = 459

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 44/269 (16%), Positives = 91/269 (33%), Gaps = 30/269 (11%)

Query: 157 EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS-------LSQ 209
           ED  E+  +       +R ++ ++ I   C K C FC        +  ++         +
Sbjct: 36  EDFGEQAFLQAVARYPERPLSLYVHIPF-CHKLCYFCGCNKIVTRQQHKADQYLDALEQE 94

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE-----IKGLVRLR 264
           +V  A       V ++   G       G      K   S L+  L E         + + 
Sbjct: 95  IVHRAPLFAGRHVSQLHWGG-------GTPTYLNKAQISRLMKLLRENFQFNADAEISIE 147

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
                PR++   ++            L + VQ  +  + + +NR         +++  R 
Sbjct: 148 V---DPREIELDVLDYLRAEG--FNRLSMGVQDFNKEVQRLVNREQDEEFIFALLNHARE 202

Query: 325 VRPDIAISS-DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQV 382
           +      ++ D I G P +T + F  T+  V ++   +   F Y+       +   ++  
Sbjct: 203 I--GFTSTNIDLIYGLPKQTPESFAFTLKRVAELNPDRLSVFNYAHLPTIFAAQRKIKDA 260

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVG 411
           D     ++L  LQ+ +     S     +G
Sbjct: 261 DLPSPQQKLDILQETIAFLTQSGYQ-FIG 288


>gi|167753849|ref|ZP_02425976.1| hypothetical protein ALIPUT_02134 [Alistipes putredinis DSM 17216]
 gi|167658474|gb|EDS02604.1| hypothetical protein ALIPUT_02134 [Alistipes putredinis DSM 17216]
          Length = 301

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/248 (14%), Positives = 75/248 (30%), Gaps = 14/248 (5%)

Query: 120 RSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAF 179
               VNV+  P+               +R+V  D+S+          +      R    F
Sbjct: 5   HEEKVNVLKKPEWLKIRLHRTAEYADVQRIV-RDHSLHTICSSGLCPNKAECWSRRTATF 63

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
           + + E C + C FC      G  +    S+    A  +   G+  + +        R   
Sbjct: 64  MILGEICTRNCRFCAT--LSGRPLPPDPSEPAKLAESVRLMGLRHVVVTSVT----RDDL 117

Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
            DG    +++ + ++      V +           D L         ++ +     +  +
Sbjct: 118 PDGGAAHWAECVRAIRAENPDVTIELLIPDLDAKPDLLDTVIASGPDIIGHNIETTERLT 177

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
              L     R+       ++  +          S  +VG  GE+D++   T+  +   G 
Sbjct: 178 P--LVRSRARYRTS--LDVLRYLSEK--GAVAKSGLMVGL-GESDEEVLQTLRDLHAAGV 230

Query: 360 AQAFSFKY 367
                 +Y
Sbjct: 231 EIVTLGQY 238


>gi|126737673|ref|ZP_01753403.1| lipoyl synthase [Roseobacter sp. SK209-2-6]
 gi|126721066|gb|EBA17770.1| lipoyl synthase [Roseobacter sp. SK209-2-6]
          Length = 348

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 73/220 (33%), Gaps = 20/220 (9%)

Query: 174 RGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVN 233
           +G    + + E C + CTFC +    G   S    +    A  +   G+  + +   +  
Sbjct: 101 QGHATMMIMGEICTRGCTFCNI--ATGKPDSLDAFEPGRVAHAVQKLGLKHVVITSVD-- 156

Query: 234 AWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIK--AHGDLDVLMPYL 291
             R    DG    F+  + ++        +   T         +++       DV    L
Sbjct: 157 --RDDLADGGAEHFAQTIRAVRHRSPETTIEILTPDFIKCDLSVVEEVVEARPDVFNHNL 214

Query: 292 HLPVQSGSDRILKSMNRRHTAYEY-RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
                  +   L    R    Y +  +++  ++ + P +   S  +VG  GE +   R  
Sbjct: 215 E------TVPGLYPEVRPGARYFHSLRLLQHVKELDPSMFTKSGIMVGL-GEDEQAVRQV 267

Query: 351 MDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ--VDENVKA 388
           MD +           +Y     TP  + +++    E  K+
Sbjct: 268 MDDMRAADIDFLTIGQY--LQPTPKHHAVDRFVTPEEFKS 305


>gi|38704208|ref|NP_312816.2| coproporphyrinogen III oxidase [Escherichia coli O157:H7 str.
           Sakai]
 gi|89110161|ref|AP_003941.1| coproporphyrinogen III oxidase, SAM and NAD(P)H dependent,
           oxygen-independent [Escherichia coli str. K-12 substr.
           W3110]
 gi|90111657|ref|NP_418303.2| coproporphyrinogen III oxidase, SAM and NAD(P)H dependent,
           oxygen-independent [Escherichia coli str. K-12 substr.
           MG1655]
 gi|157159135|ref|YP_001465348.1| coproporphyrinogen III oxidase [Escherichia coli E24377A]
 gi|157163337|ref|YP_001460655.1| coproporphyrinogen III oxidase [Escherichia coli HS]
 gi|161984816|ref|YP_410158.2| coproporphyrinogen III oxidase [Shigella boydii Sb227]
 gi|161986407|ref|YP_312791.2| coproporphyrinogen III oxidase [Shigella sonnei Ss046]
 gi|168748853|ref|ZP_02773875.1| oxygen-independent coproporphyrinogen III oxidase [Escherichia coli
           O157:H7 str. EC4113]
 gi|168755535|ref|ZP_02780542.1| oxygen-independent coproporphyrinogen III oxidase [Escherichia coli
           O157:H7 str. EC4401]
 gi|168761767|ref|ZP_02786774.1| oxygen-independent coproporphyrinogen III oxidase [Escherichia coli
           O157:H7 str. EC4501]
 gi|168768152|ref|ZP_02793159.1| oxygen-independent coproporphyrinogen III oxidase [Escherichia coli
           O157:H7 str. EC4486]
 gi|168775317|ref|ZP_02800324.1| oxygen-independent coproporphyrinogen III oxidase [Escherichia coli
           O157:H7 str. EC4196]
 gi|168780770|ref|ZP_02805777.1| oxygen-independent coproporphyrinogen III oxidase [Escherichia coli
           O157:H7 str. EC4076]
 gi|168786707|ref|ZP_02811714.1| oxygen-independent coproporphyrinogen III oxidase [Escherichia coli
           O157:H7 str. EC869]
 gi|168799571|ref|ZP_02824578.1| oxygen-independent coproporphyrinogen III oxidase [Escherichia coli
           O157:H7 str. EC508]
 gi|170022119|ref|YP_001727073.1| coproporphyrinogen III oxidase [Escherichia coli ATCC 8739]
 gi|170083339|ref|YP_001732659.1| coproporphyrinogen III oxidase, SAM and NAD(P)H dependent,
           oxygen-independent [Escherichia coli str. K-12 substr.
           DH10B]
 gi|187730229|ref|YP_001882565.1| coproporphyrinogen III oxidase [Shigella boydii CDC 3083-94]
 gi|188494005|ref|ZP_03001275.1| oxygen-independent coproporphyrinogen III oxidase [Escherichia coli
           53638]
 gi|191166403|ref|ZP_03028234.1| oxygen-independent coproporphyrinogen III oxidase [Escherichia coli
           B7A]
 gi|193063904|ref|ZP_03044990.1| oxygen-independent coproporphyrinogen III oxidase [Escherichia coli
           E22]
 gi|193068087|ref|ZP_03049052.1| oxygen-independent coproporphyrinogen III oxidase [Escherichia coli
           E110019]
 gi|194428658|ref|ZP_03061195.1| oxygen-independent coproporphyrinogen III oxidase [Escherichia coli
           B171]
 gi|194435183|ref|ZP_03067414.1| oxygen-independent coproporphyrinogen III oxidase [Shigella
           dysenteriae 1012]
 gi|194438292|ref|ZP_03070383.1| oxygen-independent coproporphyrinogen III oxidase [Escherichia coli
           101-1]
 gi|195937504|ref|ZP_03082886.1| coproporphyrinogen III oxidase [Escherichia coli O157:H7 str.
           EC4024]
 gi|208808451|ref|ZP_03250788.1| oxygen-independent coproporphyrinogen III oxidase [Escherichia coli
           O157:H7 str. EC4206]
 gi|208812970|ref|ZP_03254299.1| oxygen-independent coproporphyrinogen III oxidase [Escherichia coli
           O157:H7 str. EC4045]
 gi|208820972|ref|ZP_03261292.1| oxygen-independent coproporphyrinogen III oxidase [Escherichia coli
           O157:H7 str. EC4042]
 gi|209396387|ref|YP_002273383.1| oxygen-independent coproporphyrinogen III oxidase [Escherichia coli
           O157:H7 str. EC4115]
 gi|217326436|ref|ZP_03442520.1| oxygen-independent coproporphyrinogen III oxidase [Escherichia coli
           O157:H7 str. TW14588]
 gi|218556426|ref|YP_002389340.1| coproporphyrinogen III oxidase [Escherichia coli IAI1]
 gi|218697580|ref|YP_002405247.1| coproporphyrinogen III oxidase [Escherichia coli 55989]
 gi|238902934|ref|YP_002928730.1| coproporphyrinogen III oxidase, SAM and NAD(P)H dependent,
           oxygen-independent [Escherichia coli BW2952]
 gi|253775498|ref|YP_003038329.1| coproporphyrinogen III oxidase [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254163818|ref|YP_003046926.1| coproporphyrinogen III oxidase [Escherichia coli B str. REL606]
 gi|254795858|ref|YP_003080695.1| coproporphyrinogen III oxidase [Escherichia coli O157:H7 str.
           TW14359]
 gi|256021504|ref|ZP_05435369.1| coproporphyrinogen III oxidase [Shigella sp. D9]
 gi|256026100|ref|ZP_05439965.1| coproporphyrinogen III oxidase [Escherichia sp. 4_1_40B]
 gi|260846365|ref|YP_003224143.1| coproporphyrinogen III oxidase HemN, SAM and NAD(P)H dependent,
           oxygen-independent [Escherichia coli O103:H2 str. 12009]
 gi|260870583|ref|YP_003236985.1| coproporphyrinogen III oxidase HemN, SAM and NAD(P)H dependent,
           oxygen-independent [Escherichia coli O111:H- str. 11128]
 gi|261223493|ref|ZP_05937774.1| coproporphyrinogen III oxidase, SAM and NAD(P)H dependent,
           oxygen-independent [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261257256|ref|ZP_05949789.1| coproporphyrinogen III oxidase HemN, SAM and NAD(P)H dependent,
           oxygen-independent [Escherichia coli O157:H7 str.
           FRIK966]
 gi|291285277|ref|YP_003502095.1| Oxygen-independent coproporphyrinogen III oxidase [Escherichia coli
           O55:H7 str. CB9615]
 gi|293470178|ref|ZP_06664589.1| oxygen-independent coproporphyrinogen III oxidase [Escherichia coli
           B088]
 gi|300819246|ref|ZP_07099446.1| oxygen-independent coproporphyrinogen III oxidase [Escherichia coli
           MS 107-1]
 gi|300823688|ref|ZP_07103814.1| oxygen-independent coproporphyrinogen III oxidase [Escherichia coli
           MS 119-7]
 gi|300906184|ref|ZP_07123896.1| oxygen-independent coproporphyrinogen III oxidase [Escherichia coli
           MS 84-1]
 gi|300919050|ref|ZP_07135594.1| oxygen-independent coproporphyrinogen III oxidase [Escherichia coli
           MS 115-1]
 gi|300925944|ref|ZP_07141778.1| oxygen-independent coproporphyrinogen III oxidase [Escherichia coli
           MS 182-1]
 gi|300931700|ref|ZP_07147007.1| oxygen-independent coproporphyrinogen III oxidase [Escherichia coli
           MS 187-1]
 gi|300948169|ref|ZP_07162298.1| oxygen-independent coproporphyrinogen III oxidase [Escherichia coli
           MS 116-1]
 gi|300957297|ref|ZP_07169524.1| oxygen-independent coproporphyrinogen III oxidase [Escherichia coli
           MS 175-1]
 gi|301027908|ref|ZP_07191199.1| oxygen-independent coproporphyrinogen III oxidase [Escherichia coli
           MS 196-1]
 gi|301303335|ref|ZP_07209459.1| oxygen-independent coproporphyrinogen III oxidase [Escherichia coli
           MS 124-1]
 gi|301328183|ref|ZP_07221311.1| oxygen-independent coproporphyrinogen III oxidase [Escherichia coli
           MS 78-1]
 gi|301648442|ref|ZP_07248173.1| oxygen-independent coproporphyrinogen III oxidase [Escherichia coli
           MS 146-1]
 gi|307140561|ref|ZP_07499917.1| coproporphyrinogen III oxidase [Escherichia coli H736]
 gi|307314013|ref|ZP_07593627.1| oxygen-independent coproporphyrinogen III oxidase [Escherichia coli
           W]
 gi|309797825|ref|ZP_07692208.1| oxygen-independent coproporphyrinogen III oxidase [Escherichia coli
           MS 145-7]
 gi|312971847|ref|ZP_07786021.1| oxygen-independent coproporphyrinogen III oxidase [Escherichia coli
           1827-70]
 gi|331644596|ref|ZP_08345715.1| oxygen-independent coproporphyrinogen III oxidase [Escherichia coli
           H736]
 gi|331655549|ref|ZP_08356541.1| oxygen-independent coproporphyrinogen III oxidase [Escherichia coli
           M718]
 gi|331670709|ref|ZP_08371545.1| oxygen-independent coproporphyrinogen III oxidase [Escherichia coli
           TA271]
 gi|331679974|ref|ZP_08380636.1| oxygen-independent coproporphyrinogen III oxidase [Escherichia coli
           H591]
 gi|2506308|sp|P32131|HEMN_ECOLI RecName: Full=Oxygen-independent coproporphyrinogen-III oxidase;
           Short=Coprogen oxidase; Short=Coproporphyrinogenase
 gi|1220106|dbj|BAA03961.1| hemN [Escherichia coli W3110]
 gi|85676192|dbj|BAE77442.1| coproporphyrinogen III oxidase, SAM and NAD(P)H dependent,
           oxygen-independent [Escherichia coli str. K12 substr.
           W3110]
 gi|87082341|gb|AAC76864.2| coproporphyrinogen III oxidase, SAM and NAD(P)H dependent,
           oxygen-independent [Escherichia coli str. K-12 substr.
           MG1655]
 gi|157069017|gb|ABV08272.1| oxygen-independent coproporphyrinogen III oxidase [Escherichia coli
           HS]
 gi|157081165|gb|ABV20873.1| oxygen-independent coproporphyrinogen III oxidase [Escherichia coli
           E24377A]
 gi|169757047|gb|ACA79746.1| oxygen-independent coproporphyrinogen III oxidase [Escherichia coli
           ATCC 8739]
 gi|169891174|gb|ACB04881.1| coproporphyrinogen III oxidase, SAM and NAD(P)H dependent,
           oxygen-independent [Escherichia coli str. K-12 substr.
           DH10B]
 gi|187427221|gb|ACD06495.1| oxygen-independent coproporphyrinogen III oxidase [Shigella boydii
           CDC 3083-94]
 gi|187769143|gb|EDU32987.1| oxygen-independent coproporphyrinogen III oxidase [Escherichia coli
           O157:H7 str. EC4196]
 gi|188016759|gb|EDU54881.1| oxygen-independent coproporphyrinogen III oxidase [Escherichia coli
           O157:H7 str. EC4113]
 gi|188489204|gb|EDU64307.1| oxygen-independent coproporphyrinogen III oxidase [Escherichia coli
           53638]
 gi|189001408|gb|EDU70394.1| oxygen-independent coproporphyrinogen III oxidase [Escherichia coli
           O157:H7 str. EC4076]
 gi|189357108|gb|EDU75527.1| oxygen-independent coproporphyrinogen III oxidase [Escherichia coli
           O157:H7 str. EC4401]
 gi|189362689|gb|EDU81108.1| oxygen-independent coproporphyrinogen III oxidase [Escherichia coli
           O157:H7 str. EC4486]
 gi|189367897|gb|EDU86313.1| oxygen-independent coproporphyrinogen III oxidase [Escherichia coli
           O157:H7 str. EC4501]
 gi|189373340|gb|EDU91756.1| oxygen-independent coproporphyrinogen III oxidase [Escherichia coli
           O157:H7 str. EC869]
 gi|189378080|gb|EDU96496.1| oxygen-independent coproporphyrinogen III oxidase [Escherichia coli
           O157:H7 str. EC508]
 gi|190903503|gb|EDV63221.1| oxygen-independent coproporphyrinogen III oxidase [Escherichia coli
           B7A]
 gi|192929369|gb|EDV82977.1| oxygen-independent coproporphyrinogen III oxidase [Escherichia coli
           E22]
 gi|192958707|gb|EDV89145.1| oxygen-independent coproporphyrinogen III oxidase [Escherichia coli
           E110019]
 gi|194413241|gb|EDX29526.1| oxygen-independent coproporphyrinogen III oxidase [Escherichia coli
           B171]
 gi|194416581|gb|EDX32719.1| oxygen-independent coproporphyrinogen III oxidase [Shigella
           dysenteriae 1012]
 gi|194422729|gb|EDX38725.1| oxygen-independent coproporphyrinogen III oxidase [Escherichia coli
           101-1]
 gi|208728252|gb|EDZ77853.1| oxygen-independent coproporphyrinogen III oxidase [Escherichia coli
           O157:H7 str. EC4206]
 gi|208734247|gb|EDZ82934.1| oxygen-independent coproporphyrinogen III oxidase [Escherichia coli
           O157:H7 str. EC4045]
 gi|208741095|gb|EDZ88777.1| oxygen-independent coproporphyrinogen III oxidase [Escherichia coli
           O157:H7 str. EC4042]
 gi|209157787|gb|ACI35220.1| oxygen-independent coproporphyrinogen III oxidase [Escherichia coli
           O157:H7 str. EC4115]
 gi|217322657|gb|EEC31081.1| oxygen-independent coproporphyrinogen III oxidase [Escherichia coli
           O157:H7 str. TW14588]
 gi|218354312|emb|CAV01023.1| coproporphyrinogen III oxidase, SAM and NAD(P)H dependent,
           oxygen-independent [Escherichia coli 55989]
 gi|218363195|emb|CAR00837.1| coproporphyrinogen III oxidase, SAM and NAD(P)H dependent,
           oxygen-independent [Escherichia coli IAI1]
 gi|238860613|gb|ACR62611.1| coproporphyrinogen III oxidase, SAM and NAD(P)H dependent,
           oxygen-independent [Escherichia coli BW2952]
 gi|242379404|emb|CAQ34218.1| coproporphyrinogen III dehydrogenase [Escherichia coli BL21(DE3)]
 gi|253326542|gb|ACT31144.1| oxygen-independent coproporphyrinogen III oxidase [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253975719|gb|ACT41390.1| coproporphyrinogen III oxidase [Escherichia coli B str. REL606]
 gi|253979875|gb|ACT45545.1| coproporphyrinogen III oxidase [Escherichia coli BL21(DE3)]
 gi|254595258|gb|ACT74619.1| coproporphyrinogen III oxidase, SAM and NAD(P)H dependent,
           oxygen-independent [Escherichia coli O157:H7 str.
           TW14359]
 gi|257761512|dbj|BAI33009.1| coproporphyrinogen III oxidase HemN, SAM and NAD(P)H dependent,
           oxygen-independent [Escherichia coli O103:H2 str. 12009]
 gi|257766939|dbj|BAI38434.1| coproporphyrinogen III oxidase HemN, SAM and NAD(P)H dependent,
           oxygen-independent [Escherichia coli O111:H- str. 11128]
 gi|260451298|gb|ACX41720.1| oxygen-independent coproporphyrinogen III oxidase [Escherichia coli
           DH1]
 gi|290765150|gb|ADD59111.1| Oxygen-independent coproporphyrinogen III oxidase [Escherichia coli
           O55:H7 str. CB9615]
 gi|291321388|gb|EFE60827.1| oxygen-independent coproporphyrinogen III oxidase [Escherichia coli
           B088]
 gi|299878990|gb|EFI87201.1| oxygen-independent coproporphyrinogen III oxidase [Escherichia coli
           MS 196-1]
 gi|300315954|gb|EFJ65738.1| oxygen-independent coproporphyrinogen III oxidase [Escherichia coli
           MS 175-1]
 gi|300401986|gb|EFJ85524.1| oxygen-independent coproporphyrinogen III oxidase [Escherichia coli
           MS 84-1]
 gi|300413830|gb|EFJ97140.1| oxygen-independent coproporphyrinogen III oxidase [Escherichia coli
           MS 115-1]
 gi|300417999|gb|EFK01310.1| oxygen-independent coproporphyrinogen III oxidase [Escherichia coli
           MS 182-1]
 gi|300452286|gb|EFK15906.1| oxygen-independent coproporphyrinogen III oxidase [Escherichia coli
           MS 116-1]
 gi|300460539|gb|EFK24032.1| oxygen-independent coproporphyrinogen III oxidase [Escherichia coli
           MS 187-1]
 gi|300523750|gb|EFK44819.1| oxygen-independent coproporphyrinogen III oxidase [Escherichia coli
           MS 119-7]
 gi|300528132|gb|EFK49194.1| oxygen-independent coproporphyrinogen III oxidase [Escherichia coli
           MS 107-1]
 gi|300841289|gb|EFK69049.1| oxygen-independent coproporphyrinogen III oxidase [Escherichia coli
           MS 124-1]
 gi|300845320|gb|EFK73080.1| oxygen-independent coproporphyrinogen III oxidase [Escherichia coli
           MS 78-1]
 gi|301073485|gb|EFK88291.1| oxygen-independent coproporphyrinogen III oxidase [Escherichia coli
           MS 146-1]
 gi|306906330|gb|EFN36846.1| oxygen-independent coproporphyrinogen III oxidase [Escherichia coli
           W]
 gi|308118581|gb|EFO55843.1| oxygen-independent coproporphyrinogen III oxidase [Escherichia coli
           MS 145-7]
 gi|309704292|emb|CBJ03641.1| oxygen-independent coproporphyrinogen III oxidase [Escherichia coli
           ETEC H10407]
 gi|310334224|gb|EFQ00429.1| oxygen-independent coproporphyrinogen III oxidase [Escherichia coli
           1827-70]
 gi|315063152|gb|ADT77479.1| coproporphyrinogen III oxidase, SAM and NAD(P)H dependent,
           oxygen-independent [Escherichia coli W]
 gi|315138435|dbj|BAJ45594.1| O2-independent coproporphyrinogen III oxidase [Escherichia coli
           DH1]
 gi|315254231|gb|EFU34199.1| oxygen-independent coproporphyrinogen III oxidase [Escherichia coli
           MS 85-1]
 gi|315618767|gb|EFU99351.1| oxygen-independent coproporphyrinogen III oxidase [Escherichia coli
           3431]
 gi|320182139|gb|EFW57042.1| Coproporphyrinogen III oxidase, oxygen-independent [Shigella boydii
           ATCC 9905]
 gi|320185492|gb|EFW60260.1| Coproporphyrinogen III oxidase, oxygen-independent [Shigella
           flexneri CDC 796-83]
 gi|320191042|gb|EFW65692.1| Coproporphyrinogen III oxidase, oxygen-independent [Escherichia
           coli O157:H7 str. EC1212]
 gi|320198933|gb|EFW73531.1| Coproporphyrinogen III oxidase, oxygen-independent [Escherichia
           coli EC4100B]
 gi|320639204|gb|EFX08831.1| coproporphyrinogen III oxidase [Escherichia coli O157:H7 str.
           G5101]
 gi|320644592|gb|EFX13646.1| coproporphyrinogen III oxidase [Escherichia coli O157:H- str.
           493-89]
 gi|320649916|gb|EFX18424.1| coproporphyrinogen III oxidase [Escherichia coli O157:H- str. H
           2687]
 gi|320655223|gb|EFX23169.1| coproporphyrinogen III oxidase [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320660850|gb|EFX28296.1| coproporphyrinogen III oxidase [Escherichia coli O55:H7 str. USDA
           5905]
 gi|320666009|gb|EFX33028.1| coproporphyrinogen III oxidase [Escherichia coli O157:H7 str.
           LSU-61]
 gi|323161072|gb|EFZ46990.1| oxygen-independent coproporphyrinogen III oxidase [Escherichia coli
           E128010]
 gi|323167493|gb|EFZ53200.1| oxygen-independent coproporphyrinogen III oxidase [Shigella sonnei
           53G]
 gi|323174268|gb|EFZ59895.1| oxygen-independent coproporphyrinogen III oxidase [Escherichia coli
           LT-68]
 gi|323177876|gb|EFZ63460.1| oxygen-independent coproporphyrinogen III oxidase [Escherichia coli
           1180]
 gi|323182384|gb|EFZ67791.1| oxygen-independent coproporphyrinogen III oxidase [Escherichia coli
           1357]
 gi|323380784|gb|ADX53052.1| oxygen-independent coproporphyrinogen III oxidase [Escherichia coli
           KO11]
 gi|323934353|gb|EGB30766.1| oxygen-independent coproporphyrinogen III oxidase [Escherichia coli
           E1520]
 gi|323939087|gb|EGB35303.1| oxygen-independent coproporphyrinogen III oxidase [Escherichia coli
           E482]
 gi|323943762|gb|EGB39859.1| oxygen-independent coproporphyrinogen III oxidase [Escherichia coli
           H120]
 gi|323959366|gb|EGB55027.1| oxygen-independent coproporphyrinogen III oxidase [Escherichia coli
           H489]
 gi|323969733|gb|EGB65016.1| oxygen-independent coproporphyrinogen III oxidase [Escherichia coli
           TA007]
 gi|324115639|gb|EGC09577.1| oxygen-independent coproporphyrinogen III oxidase [Escherichia coli
           E1167]
 gi|326338130|gb|EGD61960.1| Coproporphyrinogen III oxidase, oxygen-independent [Escherichia
           coli O157:H7 str. 1044]
 gi|326342576|gb|EGD66349.1| Coproporphyrinogen III oxidase, oxygen-independent [Escherichia
           coli O157:H7 str. 1125]
 gi|331036058|gb|EGI08294.1| oxygen-independent coproporphyrinogen III oxidase [Escherichia coli
           H736]
 gi|331046650|gb|EGI18735.1| oxygen-independent coproporphyrinogen III oxidase [Escherichia coli
           M718]
 gi|331061964|gb|EGI33887.1| oxygen-independent coproporphyrinogen III oxidase [Escherichia coli
           TA271]
 gi|331072300|gb|EGI43633.1| oxygen-independent coproporphyrinogen III oxidase [Escherichia coli
           H591]
 gi|332085160|gb|EGI90338.1| oxygen-independent coproporphyrinogen III oxidase [Shigella
           dysenteriae 155-74]
 gi|332088568|gb|EGI93682.1| oxygen-independent coproporphyrinogen III oxidase [Shigella boydii
           3594-74]
 gi|332345857|gb|AEE59191.1| oxygen-independent coproporphyrinogen III oxidase HemN [Escherichia
           coli UMNK88]
          Length = 457

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 44/269 (16%), Positives = 91/269 (33%), Gaps = 30/269 (11%)

Query: 157 EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS-------LSQ 209
           ED  E+  +       +R ++ ++ I   C K C FC        +  ++         +
Sbjct: 34  EDFGEQAFLQAVARYPERPLSLYVHIPF-CHKLCYFCGCNKIVTRQQHKADQYLDALEQE 92

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE-----IKGLVRLR 264
           +V  A       V ++   G       G      K   S L+  L E         + + 
Sbjct: 93  IVHRAPLFAGRHVSQLHWGG-------GTPTYLNKAQISRLMKLLRENFQFNADAEISIE 145

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
                PR++   ++            L + VQ  +  + + +NR         +++  R 
Sbjct: 146 V---DPREIELDVLDHLRAEG--FNRLSMGVQDFNKEVQRLVNREQDEEFIFALLNHARE 200

Query: 325 VRPDIAISS-DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQV 382
           +      ++ D I G P +T + F  T+  V ++   +   F Y+       +   ++  
Sbjct: 201 I--GFTSTNIDLIYGLPKQTPESFAFTLKRVAELNPDRLSVFNYAHLPTIFAAQRKIKDA 258

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVG 411
           D     ++L  LQ+ +     S     +G
Sbjct: 259 DLPSPQQKLDILQETIAFLTQSGYQ-FIG 286


>gi|312143474|ref|YP_003994920.1| Radical SAM domain protein [Halanaerobium sp. 'sapolanicus']
 gi|311904125|gb|ADQ14566.1| Radical SAM domain protein [Halanaerobium sp. 'sapolanicus']
          Length = 620

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 62/320 (19%), Positives = 116/320 (36%), Gaps = 39/320 (12%)

Query: 48  FFSQGYERVNSMDD-ADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSR--IKEGGDLLVV 104
               G   V + +  AD I L       +A   +   L + + LK+     K+    L  
Sbjct: 142 LVIAGGATVFNPEPIADFIDL---FFIGEAEGIIIELLNKYQRLKSKGMLKKDVLLKLSK 198

Query: 105 VAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV-DTDYSVEDKFERL 163
           + G    +   EI      +  +          +   +AR  K++V + D +       +
Sbjct: 199 IDGVYVPSLYSEIYGEQGEILAL--------NSQNGVKARTKKQLVQNLDQAFYPTDFIV 250

Query: 164 SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GV 222
              D  + R       L I  GC + C FC    T      RS+ ++++ A K + + G 
Sbjct: 251 PYRDTVHERV-----VLEISRGCTRSCRFCAAGMTYRPSRERSVERLMELAEKALKSTGY 305

Query: 223 CEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPR--DMSDCLIKA 280
            EI+L   +   +             +LL  ++E     ++  + S  R  + S  L K 
Sbjct: 306 DEISLTSLSAMDY---------TKIEELLKRMTEKFSQHKISVSLSSLRVDEFSVELAKE 356

Query: 281 HGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD--IAISSDFIVG 338
              +      L    ++G+ R+   +N+         + + +RS   +    I   F++G
Sbjct: 357 VQKVRK--TGLTFAPEAGTQRLRNVINKNINEE---DLYNAVRSAFENGWSRIKLYFMIG 411

Query: 339 FPGETDDDFRATMDLVDKIG 358
            P ET DD    ++L  K+ 
Sbjct: 412 LPTETMDDIAGIVELAKKVR 431


>gi|308447676|ref|XP_003087489.1| hypothetical protein CRE_30344 [Caenorhabditis remanei]
 gi|308255117|gb|EFO99069.1| hypothetical protein CRE_30344 [Caenorhabditis remanei]
          Length = 335

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/240 (13%), Positives = 79/240 (32%), Gaps = 12/240 (5%)

Query: 130 PQTYYRLPELLERARFGKRVVDT--DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCD 187
           PQ    +   + +    +R+ +      +    E  +  +       G   F+ + + C 
Sbjct: 33  PQKPEWIRAKISQPEEVQRIKNLLRQQKLHTVCEEAACPNLPQCFGGGTATFMIMGDICT 92

Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTF 247
           + C FC V + R   +     +    A  + +  +  + +   +    R   LDG    F
Sbjct: 93  RRCPFCDVAHGRPNIL--DADEPKHLAETVKNLNLNYVVITSVD----RDDLLDGGAQHF 146

Query: 248 SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307
           +  +  + +      +       R   +  +    +     P +         R+ ++M 
Sbjct: 147 AACIREIRKSSPDTLIEILVPDFRGRLEVALNILSETP---PDVFNHNIETVPRLYRAMR 203

Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
                    +++ R + +RPDIA     +VG  GE + +    ++ +           +Y
Sbjct: 204 PGSDYQHSLELLKRFKHLRPDIATKCGLMVGL-GEVEAEVIVLLNDLSDYQVDYVTIGQY 262


>gi|260857735|ref|YP_003231626.1| coproporphyrinogen III oxidase HemN, SAM and NAD(P)H dependent,
           oxygen-independent [Escherichia coli O26:H11 str. 11368]
 gi|257756384|dbj|BAI27886.1| coproporphyrinogen III oxidase HemN, SAM and NAD(P)H dependent,
           oxygen-independent [Escherichia coli O26:H11 str. 11368]
          Length = 457

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 44/269 (16%), Positives = 91/269 (33%), Gaps = 30/269 (11%)

Query: 157 EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS-------LSQ 209
           ED  E+  +       +R ++ ++ I   C K C FC        +  ++         +
Sbjct: 34  EDFGEQAFLQAVARYPERPLSLYVHIPF-CHKLCYFCGCNKIVTRQQHKADQYLDALEQE 92

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE-----IKGLVRLR 264
           +V  A       V ++   G       G      K   S L+  L E         + + 
Sbjct: 93  IVHRAPLFAGRHVSQLHWGG-------GTPTYLNKAQISRLMKLLRENFQFNADAEISIE 145

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
                PR++   ++            L + VQ  +  + + +NR         +++  R 
Sbjct: 146 V---DPREIELDVLDHLRAEG--FNRLSMGVQDFNKEVQRLVNREQDEEFIFALLNHARE 200

Query: 325 VRPDIAISS-DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQV 382
           +      ++ D I G P +T + F  T+  V ++   +   F Y+       +   ++  
Sbjct: 201 I--GFTSTNIDLIYGLPKQTPESFAFTLKRVAELNPDRLSVFNYAHLPTIFAAQRKIKDA 258

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVG 411
           D     ++L  LQ+ +     S     +G
Sbjct: 259 DLPSPQQKLDILQETIAFLTQSGYQ-FIG 286


>gi|212636665|ref|YP_002313190.1| lipoyl synthase [Shewanella piezotolerans WP3]
 gi|226737642|sp|B8CSH7|LIPA_SHEPW RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|212558149|gb|ACJ30603.1| Lipoate synthase [Shewanella piezotolerans WP3]
          Length = 321

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/184 (13%), Positives = 56/184 (30%), Gaps = 14/184 (7%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V    G  +     +    A+ + D  +  + +   +    R    DG   
Sbjct: 94  CTRRCPFCDV--AHGRPLKPDAEEPKKLAQTIKDMKLKYVVITSVD----RDDLRDGGAQ 147

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLD--VLMPYLHLPVQSGSDRIL 303
            F+D +  +  +   +++       R   D  +         V    L            
Sbjct: 148 HFADCIREIRLLNPEIKIETLVPDFRGRIDKALDILAIEPPDVFNHNLETAPMHY----- 202

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           +             ++ + +   PDI   S  ++G  GE++++    +  +         
Sbjct: 203 RKARPGANYQWSLDLLKKFKERHPDIPTKSGLMMGL-GESNEEIAQVLHDLRAHDVEMLT 261

Query: 364 SFKY 367
             +Y
Sbjct: 262 LGQY 265


>gi|254467890|ref|ZP_05081296.1| radical SAM domain protein [beta proteobacterium KB13]
 gi|207086700|gb|EDZ63983.1| radical SAM domain protein [beta proteobacterium KB13]
          Length = 440

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/210 (15%), Positives = 82/210 (39%), Gaps = 17/210 (8%)

Query: 177 TAFLTIQEGCDKFCT-FCVVPYTRGIEISR-SLSQVVDEARKLIDNGVCEITLLGQNVNA 234
            A +    GC   C  +CV P  +G +I+     +++ +    I+        +      
Sbjct: 199 YAPIIATRGCPYSCYEYCVYPLQQGRKINAADPEKIISDIE-FINTNTKIKNFV------ 251

Query: 235 WRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP 294
           +R       +     L+ ++S+++        T H  ++   L +   + ++   ++   
Sbjct: 252 YRDPVFSINRKYTDQLVSAMSKLENKYEFTIET-HLNNIDSQLAEDFSNANI--KWVKFG 308

Query: 295 VQSGSDRILKSMNRRHT--AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352
           ++S  D + KS   R++    +  + ++  R+ +  I   + +I+  P +  +  R T++
Sbjct: 309 IESAIDDV-KSNVNRYSLNNDDQFKRVEYCRNNK--IKTVAMYILCQPDDNFETHRKTIE 365

Query: 353 LVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
               +    A    ++P  GTP     + +
Sbjct: 366 YAKLLRTNLAQFSIFTPYPGTPYYKKNKDL 395


>gi|187732645|ref|YP_001881786.1| hypothetical protein SbBS512_E3451 [Shigella boydii CDC 3083-94]
 gi|187429637|gb|ACD08911.1| radical SAM domain protein [Shigella boydii CDC 3083-94]
          Length = 739

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 47/297 (15%), Positives = 97/297 (32%), Gaps = 58/297 (19%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDN--GVCEIT--LLGQNVNA 234
           + I  GC   C+FC +    G  I SRS   +++E   + D   G   +   L G   N 
Sbjct: 380 VNIMRGCFGGCSFCSITEHEGRIIQSRSEDSIINEIEAIRDTVPGFTGVISDLGGPTANM 439

Query: 235 WR----------------------GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
           +                          +D       +L     ++KG+ ++   +    D
Sbjct: 440 YMLRCKSPRAEQTCRRLSCVYPDICPHMDTNHEPTINLYRRARDLKGIKKILIASGVRYD 499

Query: 273 MSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRRH--TAYEYRQIIDRI-RSVRP 327
           ++    +   +L    +  YL +  +   +  L  M +    +   ++++ D   +    
Sbjct: 500 IAVEDPRYIKELATHHVGGYLKIAPEHTEEGPLSKMMKPGMGSYDRFKELFDTYSKQAGK 559

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGY--AQAFSFKYSPRLGT---------PGS 376
           +  +   FI   PG  D+        + K  +   Q  +F  SP   +         P +
Sbjct: 560 EQYLIPYFISAHPGTRDEYMVNLALWLKKHRFRLDQVQNFYPSPLANSTTMYYTGKNPLA 619

Query: 377 NMLEQ-----VDENVKAERL-LCLQK--------KLREQQVSF-NDACVGQIIEVLI 418
            +  +     V +  K  RL   L +         +R+   +      +G   + L+
Sbjct: 620 KIGYKSEDVFVPKGDKQRRLHKALLRYHDPANWPLIRQALEAMGKKHLIGSRRDCLV 676


>gi|327399999|ref|YP_004340838.1| Radical SAM domain-containing protein [Archaeoglobus veneficus
           SNP6]
 gi|327315507|gb|AEA46123.1| Radical SAM domain protein [Archaeoglobus veneficus SNP6]
          Length = 336

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 44/219 (20%), Positives = 79/219 (36%), Gaps = 21/219 (9%)

Query: 161 ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN 220
             L  V  G NR R   A   +   C   CT+C  P      IS +  Q      +L   
Sbjct: 27  HSLVYVAKGKNRVRLFKA--LLSSKCRFDCTYC--PNPWRKGISVTPEQFARAFLELRRL 82

Query: 221 GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT-TSHPRDMSDCLIK 279
           G+ +   +        G   D EK     ++  + E   L+R  +    H + +     +
Sbjct: 83  GLVDGVFVS------SGMHSDPEK-----VMEDIIETGRLIRKEFGGYIHLKVVPGASRE 131

Query: 280 AHGDLDVLMPYLHLPVQSGSDRILK---SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFI 336
                  +   + + ++     +L    S+  RH      + I R    R  ++ ++  I
Sbjct: 132 QIKQAVEIANRVSINIEVAKPSMLNEVGSVKSRHDVLRRERWISREVRRRRKVSHTTQVI 191

Query: 337 VGFPGETDDDFRATMD-LVDKIGYAQAFSFKYSPRLGTP 374
            G  GE+D D  + M    ++ G  + +   ++P  GTP
Sbjct: 192 AGL-GESDADVISCMKKQYEEYGVTRFYISPFTPVKGTP 229


>gi|312876586|ref|ZP_07736568.1| Radical SAM domain protein [Caldicellulosiruptor lactoaceticus 6A]
 gi|311796661|gb|EFR13008.1| Radical SAM domain protein [Caldicellulosiruptor lactoaceticus 6A]
          Length = 351

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/201 (12%), Positives = 66/201 (32%), Gaps = 17/201 (8%)

Query: 176 VTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL--SQVVDEARKLIDNGVCEITLLGQNVN 233
           +   +     C   C +C +  +        +   ++V+ A++    G   + L      
Sbjct: 53  LRGLIEFSSYCKNDCFYCGLRRSNNQAQRYRMQEDEIVEVAKRAYQMGYRTVVLQS---- 108

Query: 234 AWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHL 293
              G+ +   K     ++  +     +           D       A  D         +
Sbjct: 109 ---GEDMYYNKDMLCSIIKKIKSSVDVAITLSIGERSYDEYKAFKDAGADR------FLM 159

Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
             ++ + ++ +  +   +     + +  I+S+     + + F++G PG+T DD    + L
Sbjct: 160 RFETSNRQLYEKYHPGMSFENRIECLKWIKSL--GYELGTGFLIGLPGQTIDDLAQDILL 217

Query: 354 VDKIGYAQAFSFKYSPRLGTP 374
           V ++         + P   TP
Sbjct: 218 VKELDADMIGIGPFIPHPQTP 238


>gi|295095021|emb|CBK84111.1| coproporphyrinogen III oxidase, anaerobic [Enterobacter cloacae
           subsp. cloacae NCTC 9394]
          Length = 457

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 42/248 (16%), Positives = 92/248 (37%), Gaps = 20/248 (8%)

Query: 173 KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNV 232
           +R ++ ++ I   C K C FC        +  +   Q +D   + I +        G++V
Sbjct: 50  ERPLSLYVHIPF-CHKLCYFCGCNKIVTRQQHK-ADQYLDALEQEILHRAPLFK--GRHV 105

Query: 233 NAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL----- 287
           +        G           +S +  L+R  ++ +   ++S  +     +LDVL     
Sbjct: 106 SQLHW----GGGTPTYLNKAQISRLMALLRGNFSFNDDAEISIEVDPREIELDVLDHLRA 161

Query: 288 --MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS-DFIVGFPGETD 344
                L + VQ  +  + + +NR         +++  R +      ++ D I G P +T 
Sbjct: 162 EGFNRLSMGVQDFNKEVQRLVNREQDEAFIFALLNHAREI--GFTSTNIDLIYGLPKQTP 219

Query: 345 DDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQV 403
           + F  T+  V ++   +   F Y+       +   ++  D     ++L  LQ+ +     
Sbjct: 220 ESFAYTLKRVAELNPDRLSVFNYAHLPTLFAAQRKIKDADLPSAQQKLDILQETIASLTE 279

Query: 404 SFNDACVG 411
           +     +G
Sbjct: 280 TGYQ-FIG 286


>gi|261210176|ref|ZP_05924473.1| coproporphyrinogen III oxidase oxygen-independent [Vibrio sp.
           RC341]
 gi|260840716|gb|EEX67265.1| coproporphyrinogen III oxidase oxygen-independent [Vibrio sp.
           RC341]
          Length = 462

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 45/296 (15%), Positives = 99/296 (33%), Gaps = 20/296 (6%)

Query: 127 VVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVD----GGYNRKRGVTAFLTI 182
           VV  Q       +L++  +      +  +  +  E  +I D         +R ++ ++ I
Sbjct: 5   VVPSQQIVWDQAILDKYNYSGPRYTSYPTAVEFHEAFTIADFDMACTQYPERPLSLYIHI 64

Query: 183 QEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG 242
              C K C +C          S    + +D     I        L G++V      G   
Sbjct: 65  PF-CHKLCYYCGCNKVITRH-SHKADEYLDVLEHEIRQ--RASLLTGRDVTQLHFGGGTP 120

Query: 243 EKCTFSDLLYSLSEIKGLVRL-----RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQS 297
              T + +   ++ ++                PR++   ++            + + VQ 
Sbjct: 121 TFLTNAQISRLMTLLRSEFHFTDDAEISIEIDPREIQLEVLDHLRQEG--FNRVSIGVQD 178

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS-DFIVGFPGETDDDFRATMDLVDK 356
            +  + K +NR         +++R + +      ++ D I G P +T + F  T+  V  
Sbjct: 179 FNKEVQKLVNREQDEQFIFALVERAKQL--GFRSTNLDLIYGLPKQTAETFAQTLQQVLT 236

Query: 357 IGYAQAFSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVG 411
           +   +   F Y+       +   ++  D     E+L  LQ+ +     +     +G
Sbjct: 237 MKPGRLSVFNYAHMPQLFAAQRKIKDADLPAAEEKLAILQQTITTLTGAGYQ-FIG 291


>gi|224373544|ref|YP_002607916.1| radical SAM protein, family [Nautilia profundicola AmH]
 gi|223589646|gb|ACM93382.1| radical SAM protein, family [Nautilia profundicola AmH]
          Length = 313

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/154 (14%), Positives = 54/154 (35%), Gaps = 9/154 (5%)

Query: 221 GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKA 280
           G  +  +  Q+              T   L         ++ +   T     ++D  ++ 
Sbjct: 95  GAKKFIVYFQSFTNTYAPFE-----TLKALYEKALSFPDVIGISVGT-RTDSITDETLEY 148

Query: 281 HGDL-DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGF 339
             +L      ++   +QS +D  LK +NR H     ++++ + + +  ++ +    I G 
Sbjct: 149 LAELSKKYEVWVEYGIQSSNDETLKKINRGHDFANVKEVVKKTKDL--NLNVCGHLIFGL 206

Query: 340 PGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
           PGET +D   ++    ++               T
Sbjct: 207 PGETQEDMLKSVKDTIELNIDSIKFHPLYVTENT 240


>gi|262404853|ref|ZP_06081407.1| coproporphyrinogen III oxidase oxygen-independent [Vibrio sp.
           RC586]
 gi|262348937|gb|EEY98076.1| coproporphyrinogen III oxidase oxygen-independent [Vibrio sp.
           RC586]
          Length = 462

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 52/298 (17%), Positives = 104/298 (34%), Gaps = 24/298 (8%)

Query: 127 VVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVD----GGYNRKRGVTAFLTI 182
           VV  Q       +L++  +      +  +  +  E  +I D         +R ++ ++ I
Sbjct: 5   VVPSQQIVWDQAILDKYNYSGPRYTSYPTAVEFHEAFTIADFDMACTQYPERPLSLYIHI 64

Query: 183 QEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG 242
              C K C +C          S    + +D     I        L G+NV         G
Sbjct: 65  PF-CHKLCYYCGCNKVITRH-SHKADEYLDVLEHEIRQ--RASLLTGRNVTQLH---FGG 117

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL-------MPYLHLPV 295
              TF      +S +  L+R  +  +   ++S  +      L+VL          + + V
Sbjct: 118 GTPTF-LTNAQISRLMTLLRSEFDFADDAEISIEIDPREIQLEVLDHLRQEGFNRVSIGV 176

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS-DFIVGFPGETDDDFRATMDLV 354
           Q  +  + K +NR         +++R + +      ++ D I G P +T + F  T+  V
Sbjct: 177 QDFNKEVQKLVNREQDEQFIFALVERAKQL--GFRSTNLDLIYGLPKQTAETFAQTLQQV 234

Query: 355 DKIGYAQAFSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVG 411
             +   +   F Y+       +   ++  D     E+L  LQ+ +     +     +G
Sbjct: 235 LTMQPGRLSVFNYAHMPQLFAAQRKIKDADLPAAEEKLAILQQTIATLTGAGYQ-FIG 291


>gi|255554575|ref|XP_002518326.1| lipoic acid synthetase, putative [Ricinus communis]
 gi|308197093|sp|B9RX57|LISC_RICCO RecName: Full=Lipoyl synthase, chloroplastic; AltName: Full=Lipoate
           synthase; Short=LS; Short=Lip-syn; AltName: Full=Lipoate
           synthase, plastidial; Short=LIP1p; AltName: Full=Lipoic
           acid synthase; Flags: Precursor
 gi|223542546|gb|EEF44086.1| lipoic acid synthetase, putative [Ricinus communis]
          Length = 364

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 52/254 (20%), Positives = 95/254 (37%), Gaps = 28/254 (11%)

Query: 129 GPQTYYRLPELL-ERARFGKRVVDTDYS--------VEDKFERLSIVDGGYNRKRGVTAF 179
           G     + PE L +RA  G+R  +  +S        V ++ +  +I +       G+ A 
Sbjct: 58  GRDPNVKKPEWLRQRAPQGERFQEVKHSLSSLKLNTVCEEAQCPNIGECWNGGGDGI-AT 116

Query: 180 LTIQ---EGCDKFCTFCVVPYTRGIEISRSLS--QVVDEARKLIDNGVCEITLLGQNVNA 234
            TI    + C + C FC V  +R           +  + A  +   GV  I L   +   
Sbjct: 117 ATIMLLGDTCTRGCRFCAVKTSRNPS---PPDPLEPQNTALAIASWGVDYIVLTSVD--- 170

Query: 235 WRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPR-DMSDCLIKAHGDLDVLMPYLHL 293
            R    DG    FS+ + ++ ++K  + +   TS  R D+       H  LDV    +  
Sbjct: 171 -RDDLPDGGSGHFSETVQAMKKLKPEIMVECLTSDFRGDLEAVETLVHSGLDVFAHNIET 229

Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
                  RI++     +   +   ++   +  +  +   S  ++G  GETDD+ +  M  
Sbjct: 230 V--KRLQRIVRDPRAGY--EQSLSVLKHAKHSKEGMITKSSIMLGL-GETDDELKEAMAD 284

Query: 354 VDKIGYAQAFSFKY 367
           +  I        +Y
Sbjct: 285 LRAIDVDILTLGQY 298


>gi|77919231|ref|YP_357046.1| biotin synthase [Pelobacter carbinolicus DSM 2380]
 gi|77545314|gb|ABA88876.1| biotin synthase [Pelobacter carbinolicus DSM 2380]
          Length = 356

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 40/259 (15%), Positives = 83/259 (32%), Gaps = 34/259 (13%)

Query: 175 GVTAFLTIQEGCDKFCTFCVVPYTRGIE-ISR-SLSQVVDEARKLIDNGVCEITLLGQNV 232
            +   + +   C + C +C +          R +  +V+D ARK +D G   + L G   
Sbjct: 38  HLRGLVELSNICSRNCLYCGIRRDNQAITRYRLTADEVLDCARKAVDFGFGTLVLQGGED 97

Query: 233 NAWRGKGLDGEKCTFSDLLYSLS---EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMP 289
                K   GE  +      +L+    +       +           L++       L  
Sbjct: 98  PGL-SKDFIGELISLIKSETNLAVTLSLGERKVDEWAAWREAGADRYLLRFETSNSQLFN 156

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           Y+H P         +  +         + +  +          S  ++G PG+T +D   
Sbjct: 157 YIHPP---------RDGHAPCDRISMLKTLQSL-----GYETGSGVMIGIPGQTYEDLAR 202

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTP------GSNMLEQVDENVKA-ERLLCLQKKL---- 398
            ++L  ++         + P   TP          ++QV  +V+   R+L L + +    
Sbjct: 203 DIELFGELSLDMIGVGPFIPHPQTPLGAGQVSDAGIDQVPGSVEMGLRVLALARIVCPGA 262

Query: 399 ---REQQVSFNDACVGQII 414
                   +  D   G+ +
Sbjct: 263 NIPSTTAFATLDRQAGREM 281


>gi|26990955|ref|NP_746380.1| coproporphyrinogen III oxidase [Pseudomonas putida KT2440]
 gi|24985978|gb|AAN69844.1|AE016623_6 oxygen-independent coproporphyrinogen III oxidase [Pseudomonas
           putida KT2440]
          Length = 460

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 42/269 (15%), Positives = 92/269 (34%), Gaps = 21/269 (7%)

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR------SL 207
           +S    F+ L+ +       R ++ ++ +   C   C +C        + +R       L
Sbjct: 32  HSEVGSFDLLNALRESRRAVRPLSLYVHVPF-CANICYYCACNKVITKDRARAAPYLQRL 90

Query: 208 SQVVDEARKLID--NGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            Q +      +D    V ++   G          L     T     + L +  G   +  
Sbjct: 91  EQEIQLVACHLDPKQRVEQLHFGGGTPTFLSHVELRQLMATLRQHFHLLDDDSGDYGIEI 150

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
                   +  L++  G        + L VQ     + +++NR  +  + R +I+  R++
Sbjct: 151 DPREADWSTMGLLRELG-----FNRVSLGVQDLDPAVQRAINRLQSLEQTRTLIEAARTL 205

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY--SPRLGTPGSNML-EQV 382
           +   +++ D I G P +T + F  T++ V ++   +   F Y   P    P   +    +
Sbjct: 206 QFR-SVNLDLIYGLPKQTPEGFARTVEEVIRLQPDRLSVFNYAHLPERFMPQRRIDSNDL 264

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVG 411
                   L  L   + +   +     +G
Sbjct: 265 PSAAAK--LEMLHATIDQLTAAGY-RYIG 290


>gi|254234647|ref|ZP_04927970.1| oxygen-independent coproporphyrinogen III oxidase [Pseudomonas
           aeruginosa C3719]
 gi|126166578|gb|EAZ52089.1| oxygen-independent coproporphyrinogen III oxidase [Pseudomonas
           aeruginosa C3719]
          Length = 460

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 81/223 (36%), Gaps = 19/223 (8%)

Query: 159 KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC----VVPYTRGIEISRS-LSQVVDE 213
            F++L  +         ++ ++ I   C   C +C    V+   RG   S   L+++V E
Sbjct: 37  PFDQLHALRDSRKAGHPLSLYVHIPF-CANICYYCACNKVITKDRG--RSAPYLARLVRE 93

Query: 214 ARK-----LIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
                     +  V ++   G          L          L  L +  G   +     
Sbjct: 94  IEIVSRHLSREQVVEQLHFGGGTPTFLSPGQLRELMSQLRSHLNLLDDDSGDYGIEIDPR 153

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
                +  L++  G        + L VQ     + K++NR  T  E R I++  R+++  
Sbjct: 154 EADWSTMGLLRELG-----FNRVSLGVQDFDMEVQKAVNRMQTPEETRTIVEAARTLQYR 208

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
            +I+ D I G P +T D F  T+D V  +   +   F Y+   
Sbjct: 209 -SINLDLIYGLPKQTPDSFARTVDEVIALQPDRLSVFNYAHLP 250


>gi|329298827|ref|ZP_08256163.1| lipoyl synthase [Plautia stali symbiont]
          Length = 321

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/183 (16%), Positives = 67/183 (36%), Gaps = 12/183 (6%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V    G   +   ++ +  A+ + D  +  + +   +    R    DG   
Sbjct: 94  CTRRCPFCDV--AHGRPNAPDANEPLKLAQTIADMALRYVVITSVD----RDDLRDGGAQ 147

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAH-GDLDVLMPYLHLPVQSGSDRILK 304
            F+D + ++ E    +++       R   D  ++        +  +    V     R+ +
Sbjct: 148 HFADCISAIREKSPTIKIETLVPDFRGRMDRALEILTATPPDVFNHNLENV----PRVYR 203

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
            +          ++++R +   PD+   S  +VG  GET+ +    M  + + G      
Sbjct: 204 QVRPGANYEWSLKLLERFKEAHPDVPTKSGLMVGL-GETNAEIIEVMRDLRRHGVTMLTL 262

Query: 365 FKY 367
            +Y
Sbjct: 263 GQY 265


>gi|317486851|ref|ZP_07945663.1| radical SAM superfamily protein [Bilophila wadsworthia 3_1_6]
 gi|316921890|gb|EFV43164.1| radical SAM superfamily protein [Bilophila wadsworthia 3_1_6]
          Length = 381

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/196 (17%), Positives = 63/196 (32%), Gaps = 7/196 (3%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C +C   Y+  +  S      V  +    + G     L    V +    G      
Sbjct: 10  CRRKCRYCAF-YSNPLARSGD-EMAVYLSALYAELGQWGRRLGRVPVESVFFGGGTPSLL 67

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL----MPYLHLPVQSGSDR 301
               L   L  +     +        + +   +             +  + L VQS  D 
Sbjct: 68  DPDQLEGVLDCVGRTFEVLPGAEISMEANPDSLHTAEKASGFLAAGVNRISLGVQSLHDG 127

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
           +L+++ R H A   R+    IR       +S D + G PG+T + +         +G   
Sbjct: 128 MLETLGRLHRANAAREAFRAIREA-GCANLSLDLMWGLPGQTLEQWLEDARAAIALGPEH 186

Query: 362 AFSFKYSPRLGTPGSN 377
             ++  +   GTP + 
Sbjct: 187 ISAYGLTLEPGTPLAE 202


>gi|303256362|ref|ZP_07342376.1| lipoyl synthase [Burkholderiales bacterium 1_1_47]
 gi|302859853|gb|EFL82930.1| lipoyl synthase [Burkholderiales bacterium 1_1_47]
          Length = 322

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/195 (15%), Positives = 60/195 (30%), Gaps = 12/195 (6%)

Query: 174 RGVTAFLTIQ-EGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNV 232
            G  A   I    C + C FC + +     +     +    A      G+  + +   + 
Sbjct: 73  NGKRATFLIMGNICTRRCPFCDIAHGYPDPL--DPDEPKRLAEAAKTLGLKYVVITSVD- 129

Query: 233 NAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLH 292
              R    DG    F+  ++ L + +G+            +   + +       +  +  
Sbjct: 130 ---RDDLKDGGASHFAKCVHELRKQEGVKVEILVPDFRGRVERAIDELLSAPPDVFNHNI 186

Query: 293 LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352
             V     R+ K             ++       P I   S  +VG  GETDD+    M 
Sbjct: 187 ETV----PRLYKEARPGGNYLHSLNLLKTWSERSPSIPTKSGLMVGL-GETDDEVFEVMK 241

Query: 353 LVDKIGYAQAFSFKY 367
            + + G +     +Y
Sbjct: 242 ELREHGVSMLTIGQY 256


>gi|303228992|ref|ZP_07315802.1| B12 binding domain protein [Veillonella atypica ACS-134-V-Col7a]
 gi|302516406|gb|EFL58338.1| B12 binding domain protein [Veillonella atypica ACS-134-V-Col7a]
          Length = 581

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 46/280 (16%), Positives = 92/280 (32%), Gaps = 40/280 (14%)

Query: 99  GDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYS--- 155
            D+ +V+ G       +E+L R P ++ +V  +       L+     G   +D       
Sbjct: 83  PDIKIVLGGPEVSFTADELLERCPNIDYIVQGEGEEAFHALVTALHLGNDGLDPVIPGVR 142

Query: 156 -----------VEDKFERLSIVDGGYNRK-----RGVTAFLTIQEGCDKFCTFCVVPYTR 199
                         +   LS +   Y  +          +     GC   C +C+    +
Sbjct: 143 GRRDGSILGSLEAVEVSDLSSIPFPYTEEDMDDLEHKIIYYESSRGCPFSCQYCL-SGNK 201

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
                    + + E +  ID+GV ++  + +  N                L+  + +   
Sbjct: 202 NTVRFFPQERTLKELQWFIDHGVKQVKFVDRTFNC--------APHHHRPLMEFMRDSDT 253

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
            +        P  M++       +       + + VQS   + L ++N R+  + Y Q  
Sbjct: 254 DMNFHLE-MEPELMTEWETNILCETPPGRIQIEVGVQSTHKKTLDAIN-RYNDWPYIQ-- 309

Query: 320 DRIRSVRPDI-----AISSDFIVGFPGETDDDFRATMDLV 354
              +S+RP I      +  D IVG P E    F  + + +
Sbjct: 310 ---KSIRPIIQAGRTHVHMDLIVGLPHEDFKRFGQSFNDL 346


>gi|269303256|gb|ACZ33356.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Chlamydophila pneumoniae LPCoLN]
          Length = 373

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/219 (15%), Positives = 76/219 (34%), Gaps = 14/219 (6%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C K C +C   +      S     V      +I  G+ ++  + Q  +        G   
Sbjct: 16  CTKKCRYC--SFYTIPYKS---ESVSLYCNAVIQEGLRKLAPI-QETHFVETVFFGGGTP 69

Query: 246 TF---SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
           +     DL   L E+    +     ++P +++   ++   +  +    + + VQ+  D I
Sbjct: 70  SLVSHLDLKRILKELAPHAQEITLEANPENLTASYLRQLQETPI--NRISVGVQTFDDSI 127

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIA-ISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
           L+ + R H++      +    +     + +S D I G P ++ + F + +     +    
Sbjct: 128 LQLLGRTHSSSVAITALQECHN--HGFSNLSIDLIYGLPTQSLEIFLSDLHQALTLPITH 185

Query: 362 AFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLRE 400
              +  +    T      + +   +  E +L     L E
Sbjct: 186 ISLYNLTIDPHTSFYKHRKILVPTIAQEEILAEMSLLAE 224


>gi|227113282|ref|ZP_03826938.1| coproporphyrinogen III oxidase [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 457

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 45/248 (18%), Positives = 96/248 (38%), Gaps = 20/248 (8%)

Query: 173 KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNV 232
           +R ++ ++ I   C + C FC        +  +   + +D     I         +G+ V
Sbjct: 50  QRPLSLYIHIPF-CHRLCYFCGCNKLVTRQQHK-ADEYLDVLELEIRQ--RAPLFVGRTV 105

Query: 233 NAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL----- 287
                 G  G     + +   +S +  L+R +++ S   ++S  +     +LDVL     
Sbjct: 106 TQLHWGG--GTPTYLNKV--QISRLMSLLREQFSFSDQAELSLEVDPREIELDVLDHLRA 161

Query: 288 --MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS-DFIVGFPGETD 344
                L + VQ  +  + K +NR         +I+R +++      ++ D I G P +T 
Sbjct: 162 EGFNRLSMGVQDFNKDVQKLVNREQDEDFIFALIERAKAL--GFTSTNIDLIYGLPKQTP 219

Query: 345 DDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQV 403
           + F  T+  V ++   +   F Y+       +   +++ D     ++L  LQ+ +     
Sbjct: 220 ESFAFTLQRVAELSPHRLSVFNYAHLPSLFAAQRKIKEADLPSAEQKLDILQQTIGSLTQ 279

Query: 404 SFNDACVG 411
           S     +G
Sbjct: 280 SGYQ-FIG 286


>gi|89099303|ref|ZP_01172180.1| Mg-protoporphyrin IX monomethyl ester oxidative cyclase [Bacillus
           sp. NRRL B-14911]
 gi|89085912|gb|EAR65036.1| Mg-protoporphyrin IX monomethyl ester oxidative cyclase [Bacillus
           sp. NRRL B-14911]
          Length = 586

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 68/198 (34%), Gaps = 11/198 (5%)

Query: 177 TAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR 236
             ++    GC   C FC+     G        ++ ++ R L+DNG   I  + +  N  R
Sbjct: 177 VTYIETSRGCPFSCQFCLSSIEVG-VRYFDREKIKEDIRYLMDNGAKTIKFVDRTFNISR 235

Query: 237 GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAH-GDLDVLMPYLHLPV 295
              L+  +    +         G V     T+    M   +I     +    +    + V
Sbjct: 236 SYALEMFRFLIDEHR------PGTVFQFEITADI--MRPEVIDFLNKEAPPGLFRFEIGV 287

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
           QS +D   + + R+    +  + +  ++     I    D I G P E  D F+ T + V 
Sbjct: 288 QSTNDATNELVMRKQNFAKLTRTVTMVKDG-GKIDQHLDLIAGLPEEDYDSFKKTFNDVF 346

Query: 356 KIGYAQAFSFKYSPRLGT 373
            +   +          GT
Sbjct: 347 AMRPEELQLGFLKMLRGT 364


>gi|118579880|ref|YP_901130.1| radical SAM domain-containing protein [Pelobacter propionicus DSM
           2379]
 gi|118502590|gb|ABK99072.1| Radical SAM domain protein [Pelobacter propionicus DSM 2379]
          Length = 504

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 46/320 (14%), Positives = 102/320 (31%), Gaps = 25/320 (7%)

Query: 57  NSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEE 116
           + +  AD + ++   I+  +A++    + R R      +  G     +   C        
Sbjct: 61  DDLAWADCVFISAMSIQRTSAQE---VIERCRQRGVKTVAGGP----LFTACH------- 106

Query: 117 ILRRSPIVNVVVGPQTYYRLPELLERARFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRG 175
                P V+ +V  +    LP  L+    G+ R +  D    D  +    +    + +  
Sbjct: 107 --EDFPHVDHLVLGEAELSLPPFLDDLSRGEPRHIYADERRADVRDTPIPLWKLVDIRDY 164

Query: 176 VTAFLTIQEGCDKFCTFCVVPYTRGI-EISRSLSQVVDEARKLIDNGVCEITLLGQNVNA 234
               +    GC   C FC +    G    ++ L Q++ E   L   G         +   
Sbjct: 165 AAMNVQYSRGCPFDCEFCDITALLGRTPRTKQLPQLLAELESLYVWGWRGAIFFVDD--N 222

Query: 235 WRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP 294
           + G     ++     ++  + E           S        L++    +      + + 
Sbjct: 223 FIGDRKKLKRELLPAMIDWMEERGRPFYFYTEASIDLADDGQLMELM--VRAGFQEVFIG 280

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSV-RPDIAISSDFIVGFPGETDDDFRATMDL 353
           +++  +  L    +       R ++  ++ + R  + +   FIVGF  +    F   +  
Sbjct: 281 IETPLEEGLAESGKVQNR--NRDLLASVQHIQRAGLQVHGGFIVGFDSDPPSVFDRQIRF 338

Query: 354 VDKIGYAQAFSFKYSPRLGT 373
           + + G   A         GT
Sbjct: 339 IQESGIVTAMVGVLIALRGT 358


>gi|323168141|gb|EFZ53828.1| radical SAM superfamily protein [Shigella sonnei 53G]
          Length = 398

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 48/297 (16%), Positives = 97/297 (32%), Gaps = 58/297 (19%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDN--GVCEIT--LLGQNVNA 234
           + I  GC   C+FC +    G  I SRS   +++E   + D   G   +   L G   N 
Sbjct: 54  VNIMRGCFGGCSFCSITEHEGRIIQSRSEDSIINEIEAIRDTVPGFTGVISDLGGPTANM 113

Query: 235 WR----------------------GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
           +                          +D       +L     ++KG+ ++   +    D
Sbjct: 114 YMLRCKSPRAEQTCRRLSCVYPDICPHMDTNHEPTINLYRRARDLKGIKKILIASGVRYD 173

Query: 273 MSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRRH--TAYEYRQIIDRI-RSVRP 327
           ++    +   +L    +  YL +  +   +  L  M +    +   ++++ D   +    
Sbjct: 174 IAVEDPRYIKELATHHVGGYLKIAPEHTEEGPLSKMMKPGMGSYDRFKELFDTYSKQAGK 233

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGY--AQAFSFKYSPRLGT---------PGS 376
           +  +   FI   PG  D+D       + K  +   Q  +F  SP   +         P +
Sbjct: 234 EQYLIPYFISAHPGTRDEDMVNLALWLKKHRFRLDQVQNFYPSPLANSTTMYYTGKKPLA 293

Query: 377 NMLEQ-----VDENVKAERL-LCLQK--------KLR-EQQVSFNDACVGQIIEVLI 418
            +  +     V +  K  RL   L +         +R   +       +G   + L+
Sbjct: 294 KIGYKSEDVFVPKGDKQRRLHKALLRYHDPANWPLIRPALEAMGKKHLIGSRRDCLV 350


>gi|298252746|ref|ZP_06976540.1| coproporphyrinogen III oxidase-related Fe-S oxidoreductase
           [Gardnerella vaginalis 5-1]
 gi|297533110|gb|EFH71994.1| coproporphyrinogen III oxidase-related Fe-S oxidoreductase
           [Gardnerella vaginalis 5-1]
          Length = 440

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 39/207 (18%), Positives = 75/207 (36%), Gaps = 17/207 (8%)

Query: 186 CDKFCTFC----VVPYTRGIEISRS-LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL 240
           C + C +C          G   SR   + V  +  +L+        +      +    G 
Sbjct: 30  CLRRCGYCDFNTYTARDLGEGASREGYADVAIQEMRLVKKWQEYHGIFEPKAQSVFFGGG 89

Query: 241 DGEKCTFSDLLYSLSEIKGLVRL-----RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPV 295
                   DL+  L EI+ L          T ++P    +  I+   +       +   +
Sbjct: 90  TPTVLKAQDLVRILQEIRNLWGFNKDAEITTEANPDTADEKYIETLAEGG--FTRISFGM 147

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
           QS    +LK+++R HT     + +    +    +  S D I G PGE+ DD+R ++++  
Sbjct: 148 QSAVPHVLKTLDRTHTPENVTRGVKAANAC--GLRSSVDLIYGAPGESLDDWRESVEMAL 205

Query: 356 KIGYAQAFSFKYSPRLGTPGSNMLEQV 382
            +G     ++  +    T    M  Q+
Sbjct: 206 SLGVNHISAYALTVEPRT---KMGRQI 229


>gi|212703994|ref|ZP_03312122.1| hypothetical protein DESPIG_02047 [Desulfovibrio piger ATCC 29098]
 gi|212672587|gb|EEB33070.1| hypothetical protein DESPIG_02047 [Desulfovibrio piger ATCC 29098]
          Length = 388

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 74/221 (33%), Gaps = 21/221 (9%)

Query: 186 CDKFCTFCVVPYT----RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD 241
           C   C +C            + S  ++   D   + +D     +         + G    
Sbjct: 10  CRSRCRYCAFHSLPLGPASPDASPRVAAYRDHLLRELDLWATRLGRRPVESVFFGGGTPS 69

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLM----PYLHLPVQS 297
                F   +  L  I     L        + +   + A   +D  +      + + VQS
Sbjct: 70  LLPPDFQAAV--LERIDRHFHLAAGAEISMEANPESLLARRAVDGYLAAGINRISMGVQS 127

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSV-RPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
             DR L  + R H   +  + ++ +R+    ++ +  D + G PG+    + +T++    
Sbjct: 128 MDDRFLSLLGRPHRRADVLRAVEHLRAAGCRNLGL--DLMWGLPGQDAAHWLSTLEDALA 185

Query: 357 IGYAQAFSFKYSPRLGTP------GSNMLEQVDENVKAERL 391
           +      ++  +   GTP         +   + E+ + ER+
Sbjct: 186 LEPEHVSAYGLTLEEGTPLERDWSAGRL--SLPEDDEQERM 224


>gi|170769624|ref|ZP_02904077.1| oxygen-independent coproporphyrinogen III oxidase [Escherichia
           albertii TW07627]
 gi|170121432|gb|EDS90363.1| oxygen-independent coproporphyrinogen III oxidase [Escherichia
           albertii TW07627]
          Length = 457

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 43/269 (15%), Positives = 91/269 (33%), Gaps = 30/269 (11%)

Query: 157 EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS-------LSQ 209
           ED  E+  +       +R ++ ++ I   C K C FC        +  ++         +
Sbjct: 34  EDFGEQAFLQAVARYPERPLSLYVHIPF-CHKLCYFCGCNKIVTRQQHKADQYLDALEQE 92

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE-----IKGLVRLR 264
           ++  A       V ++   G       G      K   S L+  L E     +   + + 
Sbjct: 93  IIHRAPLFAGRKVSQLHWGG-------GTPTYLNKAQISRLMKLLRENFQFNVDAEISIE 145

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
                PR++   ++            L + VQ  +  + + +NR         ++   R 
Sbjct: 146 V---DPREIELDVLDHLRAEG--FNRLSMGVQDFNKEVQRLVNREQDEEFIFALLHHARE 200

Query: 325 VRPDIAISS-DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQV 382
           +      ++ D I G P +T + F  T+  V ++   +   F Y+       +   ++  
Sbjct: 201 I--GFTSTNIDLIYGLPKQTPESFSFTLKRVAELNPDRLSVFNYAHLPTIFAAQRKIKDA 258

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVG 411
           D     ++L  LQ+ +     S     +G
Sbjct: 259 DLPSPQQKLDILQETIAFLTQSGYQ-FIG 286


>gi|154491766|ref|ZP_02031392.1| hypothetical protein PARMER_01382 [Parabacteroides merdae ATCC
           43184]
 gi|154088007|gb|EDN87052.1| hypothetical protein PARMER_01382 [Parabacteroides merdae ATCC
           43184]
          Length = 350

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/114 (21%), Positives = 53/114 (46%), Gaps = 5/114 (4%)

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
           ++P DM+   + +  +L      + + VQS  ++ L+ +NRRH   +  + +   +    
Sbjct: 68  ANPDDMTPEYVASLRNLP--FNRISMGVQSFKEKDLRFLNRRHNREQALRAVGLCKEN-- 123

Query: 328 DI-AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
            I  IS D I G PG+T ++++  +D   ++      ++      GT    ++E
Sbjct: 124 GIQNISIDLIYGLPGQTLEEWQENLDDAIRLEIPHISAYHLIYEEGTALYKLME 177


>gi|325279491|ref|YP_004252033.1| Radical SAM domain-containing protein [Odoribacter splanchnicus DSM
           20712]
 gi|324311300|gb|ADY31853.1| Radical SAM domain protein [Odoribacter splanchnicus DSM 20712]
          Length = 613

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 44/297 (14%), Positives = 86/297 (28%), Gaps = 58/297 (19%)

Query: 139 LLERARFGKRVVDTDYSVEDKFE-----RLSIVDGGYNRKRG--------VTAFLTIQEG 185
           L++     + +V+  Y      E      L      + R +G        +   +T+  G
Sbjct: 257 LIQPVDNRQVIVNPPYPPPTTRELDAVYALPFTRLPHPRYKGKEIPAYNMIRHSVTLHRG 316

Query: 186 CDKFCTFCVVPYTRGIE-ISRSLSQV---VDEARKLIDNGVCEITLLGQNVNAWRGKGLD 241
           C   C FC +   +G   +SRS   +   +++   + D       L G + N +  KG +
Sbjct: 317 CFGGCAFCTISAHQGKFIVSRSPESIRQELEQITAMPDFKGTVTDLGGPSANMYHMKGKN 376

Query: 242 GEKCTFSD----------------------LLYSLSEIKGLVRLRYTTSHPRDMS----- 274
            E C                          +     ++ G+      +    D+      
Sbjct: 377 EEICRLCKRASCAYPTVCKNLNTDHGPLLRIYEEARQVPGIKHCFIGSGIRYDLCLSDTG 436

Query: 275 ---------DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR--HTAYEYRQIIDRI- 322
                      L         +     +  +  S  +L  M +       + + I D I 
Sbjct: 437 NKEVDKTNRRYLETVIRHH--VSGRFKVAPEHCSPTVLGLMRKPAFGLFQQLKSIFDEIN 494

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
           R  R +  I   FI   PG   +D          + +       ++P   T  + + 
Sbjct: 495 RKHRLNEQIIPYFISSHPGCRPEDMAELAVATKALDFKLEQVQDFTPTPMTVATTIY 551


>gi|157413567|ref|YP_001484433.1| lipoyl synthase [Prochlorococcus marinus str. MIT 9215]
 gi|157388142|gb|ABV50847.1| Lipoate synthase [Prochlorococcus marinus str. MIT 9215]
          Length = 299

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/193 (16%), Positives = 66/193 (34%), Gaps = 22/193 (11%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V   +G   S ++ +    A  +    +  + L        R    D    
Sbjct: 71  CTRSCAFCQV--NKGRPSSLNIDECTQVAEAVKVLNLKYVVLTSV----ARDDLPDHGAN 124

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRD-----------MSDCLIKAHGDLDVLMPYLHLP 294
            F   +  + +I   +++   T                 ++ L        +   +    
Sbjct: 125 LFISTIDEIRKIDSKIKIEVLTPDLWGGGKNFDETNNLQTERLKMILEKDPICFNHNLET 184

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           V+    R+ K + R     +   ++ + + + P I   S  ++G  GET D+ + T+  +
Sbjct: 185 VE----RLQKEVRRGANYKKSLNLLKKSKDIAPHIQTKSGIMLGL-GETLDEIKNTIYDL 239

Query: 355 DKIGYAQAFSFKY 367
            KI   Q    +Y
Sbjct: 240 KKIDCDQITIGQY 252


>gi|283783315|ref|YP_003374069.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Gardnerella vaginalis 409-05]
 gi|283441340|gb|ADB13806.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Gardnerella vaginalis 409-05]
          Length = 436

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 39/207 (18%), Positives = 75/207 (36%), Gaps = 17/207 (8%)

Query: 186 CDKFCTFC----VVPYTRGIEISRS-LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL 240
           C + C +C          G   SR   + V  +  +L+        +      +    G 
Sbjct: 26  CLRRCGYCDFNTYTARDLGEGASREGYADVAIQEMRLVKKWQEYHGIFEPKAQSVFFGGG 85

Query: 241 DGEKCTFSDLLYSLSEIKGLVRL-----RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPV 295
                   DL+  L EI+ L          T ++P    +  I+   +       +   +
Sbjct: 86  TPTVLKAQDLVRILQEIRNLWGFNKDAEITTEANPDTADEKYIETLAEGG--FTRISFGM 143

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
           QS    +LK+++R HT     + +    +    +  S D I G PGE+ DD+R ++++  
Sbjct: 144 QSAVPHVLKTLDRTHTPENVTRGVKAANAC--GLRSSVDLIYGAPGESLDDWRESVEMAL 201

Query: 356 KIGYAQAFSFKYSPRLGTPGSNMLEQV 382
            +G     ++  +    T    M  Q+
Sbjct: 202 SLGVNHISAYALTVEPRT---KMGRQI 225


>gi|283784406|ref|YP_003364271.1| lipoic acid synthetase [Citrobacter rodentium ICC168]
 gi|282947860|emb|CBG87421.1| lipoic acid synthetase [Citrobacter rodentium ICC168]
          Length = 321

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/183 (17%), Positives = 67/183 (36%), Gaps = 12/183 (6%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V    G  ++   ++ V  A+ + D  +  + +   +    R    DG   
Sbjct: 94  CTRRCPFCDV--AHGRPVAPDANEPVKLAQTIADMALRYVVITSVD----RDDLRDGGAQ 147

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAH-GDLDVLMPYLHLPVQSGSDRILK 304
            F+D + ++ E    +++       R   D  ++        +  +    V     RI +
Sbjct: 148 HFADCITAIREKSPDIKIETLVPDFRGRMDRALEILTATPPDVFNHNLENV----PRIYR 203

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
            +          ++++R +   P I   S  +VG  GET+ +    M  + + G      
Sbjct: 204 QVRPGADYNWSLKLLERFKEAHPQIPTKSGLMVGL-GETNAEIIEVMRDLRRHGVTMLTL 262

Query: 365 FKY 367
            +Y
Sbjct: 263 GQY 265


>gi|256810675|ref|YP_003128044.1| hypothetical protein Mefer_0726 [Methanocaldococcus fervens AG86]
 gi|256793875|gb|ACV24544.1| conserved hypothetical protein [Methanocaldococcus fervens AG86]
          Length = 327

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 43/247 (17%), Positives = 75/247 (30%), Gaps = 27/247 (10%)

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK----FCTFCVVPYTRGIEI 203
           +++D  Y     F +  I      ++R     + I  GC       C FC      G  I
Sbjct: 17  KIIDEIYKEGYLFAQYGIYVKKKFKERIFKIPVDIGLGCPHKKNGGCIFC---PEMGRPI 73

Query: 204 SRS--------LSQVVDEARKLIDNGVCEITLL---GQNVNAWRGKGLDGEKCTFSDLLY 252
           S            Q+  +       G  +  +    G N  A   K    E   F     
Sbjct: 74  SVKYCNAKIPLKEQIEKQMENQKKKGFEKFHIYFYPGTNTYAPAEKLK--EIWDFCLSYE 131

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
            +  +    R         D+    ++   D+     ++ L +QS   + L+ +NR H  
Sbjct: 132 DVIGLSIGTRPDCLEKEKLDILKEYVENGYDI-----WIDLGIQSMHQKTLEILNRGHNV 186

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
            +    I         I +    I+G PGE+  +   T  ++  +G      +       
Sbjct: 187 SDTINAIKECHKR--GIKVCGHIILGLPGESWKEMMETAKILSLLGVESVKIYPLVVIKN 244

Query: 373 TPGSNML 379
           T    M 
Sbjct: 245 TKLEEMY 251


>gi|288940795|ref|YP_003443035.1| hypothetical protein Alvin_1064 [Allochromatium vinosum DSM 180]
 gi|288896167|gb|ADC62003.1| conserved hypothetical protein [Allochromatium vinosum DSM 180]
          Length = 324

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 79/229 (34%), Gaps = 32/229 (13%)

Query: 188 KFCTFCV-VPYTRGIEISRSLSQVVDEARKLIDN--GVCEITLLGQN-VNAWRGKGLDGE 243
             CTFC  V +    + S  +   +D  R ++    G        Q   N +    +  E
Sbjct: 51  GGCTFCNNVSFGPNAKRSPEIDPQLDAGRGVLAKRTGARRFMAYFQTYTNTYDEISVLRE 110

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
           +   + +   +  +    R         +    L+  +      + +L L +QS +D  L
Sbjct: 111 RYDSALMHPDVVGLSVGTRPDCVP----EAVLDLLAGYRARGKEV-WLELGLQSANDDTL 165

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           + +NR H   EYR  +         I + +  IVG PGE   +   T+D V ++G     
Sbjct: 166 ERVNRGHGFAEYRSAVTAAHRR--GIPVCAHLIVGLPGEGHAEALTTLDRVLELGVEGLK 223

Query: 364 SFK-----------------YSPR--LGTPG--SNMLEQVDENVKAERL 391
                               YSP          ++++E+   +V   RL
Sbjct: 224 VHPLHVVRHTRLAIDWHRGDYSPLAMDDYVAICADLVERTPASVVYHRL 272


>gi|291302905|ref|YP_003514183.1| oxygen-independent coproporphyrinogen III oxidase [Stackebrandtia
           nassauensis DSM 44728]
 gi|290572125|gb|ADD45090.1| oxygen-independent coproporphyrinogen III oxidase [Stackebrandtia
           nassauensis DSM 44728]
          Length = 406

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 42/237 (17%), Positives = 79/237 (33%), Gaps = 21/237 (8%)

Query: 186 CDKFCTFCVVPYTRGIE----ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD 241
           C   C +C        E    +SR     + EA   +        +LG            
Sbjct: 39  CASRCGYCDFNTYTAAELGSGVSRESFPRLLEAEIDLA-----ARVLGDVPRPISTIFFG 93

Query: 242 GEKCTF---SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKA--HGDLDVL-MPYLHLPV 295
           G   +    S+L   +++++    L        + +   +       L       + L +
Sbjct: 94  GGTPSLLPASELTGIVAKLESTFGLTPDAEITTEANPESVDPEYFRQLRAGGFTRVSLGM 153

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
           QS + R+L  + R HT           R    +  ++ D I G PGET +DF A++    
Sbjct: 154 QSTARRVLAVLERGHTPGRALDAAREAREAGFE-HVNLDLIYGTPGETAEDFEASLRAAV 212

Query: 356 KIGYAQAFSFKYSPRLGTPGSN--MLEQVD---ENVKAERLLCLQKKLREQQVSFND 407
             G     ++      GT  +       +    ++  A+R L  ++ L E    + +
Sbjct: 213 DTGADHVSAYSLIVEDGTRLAGQVRRGDIPAPSDDEAADRYLAAERVLGEAGFEWYE 269


>gi|223936728|ref|ZP_03628638.1| biotin synthase [bacterium Ellin514]
 gi|223894579|gb|EEF61030.1| biotin synthase [bacterium Ellin514]
          Length = 369

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 39/206 (18%), Positives = 71/206 (34%), Gaps = 19/206 (9%)

Query: 186 CDKFCTFCVVPYTR----GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD 241
           C + C+FC                    V++ A +   +GV  + L+     AW+G    
Sbjct: 80  CSENCSFCAQSAFHQTGSPRYGFVDPEPVLEAAEEANKHGVTAVGLVA----AWKGLN-- 133

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
            E     ++   + ++K   + R       D S  +IK+    D L            + 
Sbjct: 134 -EGPMLDEVCDRIRDLKKTTKTR------PDASLGIIKSQKVADRLKEAGLECYGHNLET 186

Query: 302 ILKSMNRRHTAYEYRQIIDRI-RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
             +    + T + Y   I+ I    +  I I S  I+G  GET  D       + ++G  
Sbjct: 187 SRRFFPSQCTTHTYEDRIETIGYLKKAGIKICSGGIIGM-GETRQDRCDLAFALKEVGAN 245

Query: 361 QAFSFKYSPRLGTPGSNMLEQVDENV 386
                  +P  GTP ++  +     +
Sbjct: 246 VVPINILNPIPGTPFADKPKLPPMEI 271


>gi|82750540|ref|YP_416281.1| lipoyl synthase [Staphylococcus aureus RF122]
 gi|123741021|sp|Q2YWR5|LIPA_STAAB RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|82656071|emb|CAI80479.1| lipoic acid synthetase [Staphylococcus aureus RF122]
          Length = 305

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/182 (17%), Positives = 61/182 (33%), Gaps = 11/182 (6%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V      E+   L++    A  +    +  + +        R    D    
Sbjct: 68  CTRACRFCAVKTGLPNEL--DLNEPERVAESVELMNLKHVVITAV----ARDDLRDAGSN 121

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
            +++ +  + E      +    S      D L         ++ +    V+  +      
Sbjct: 122 VYAETVRKVRERNPFTTIEILPSDMGGDYDALETLMASRPDILNHNIETVRRLTP----R 177

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           +  R T     + + R + ++PDI   S  +VG  GET ++   TMD +           
Sbjct: 178 VRARATYDRTLEFLRRSKELQPDIPTKSSIMVGL-GETIEEIYETMDDLRANDVDILTIG 236

Query: 366 KY 367
           +Y
Sbjct: 237 QY 238


>gi|15923914|ref|NP_371448.1| lipoyl synthase [Staphylococcus aureus subsp. aureus Mu50]
 gi|15926513|ref|NP_374046.1| lipoyl synthase [Staphylococcus aureus subsp. aureus N315]
 gi|21282536|ref|NP_645624.1| lipoyl synthase [Staphylococcus aureus subsp. aureus MW2]
 gi|49483085|ref|YP_040309.1| lipoyl synthase [Staphylococcus aureus subsp. aureus MRSA252]
 gi|49485701|ref|YP_042922.1| lipoyl synthase [Staphylococcus aureus subsp. aureus MSSA476]
 gi|57651616|ref|YP_185797.1| lipoyl synthase [Staphylococcus aureus subsp. aureus COL]
 gi|87161551|ref|YP_493529.1| lipoyl synthase [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|88194618|ref|YP_499414.1| lipoyl synthase [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|148267357|ref|YP_001246300.1| lipoyl synthase [Staphylococcus aureus subsp. aureus JH9]
 gi|150393410|ref|YP_001316085.1| lipoyl synthase [Staphylococcus aureus subsp. aureus JH1]
 gi|151221008|ref|YP_001331830.1| lipoyl synthase [Staphylococcus aureus subsp. aureus str. Newman]
 gi|156979250|ref|YP_001441509.1| lipoyl synthase [Staphylococcus aureus subsp. aureus Mu3]
 gi|161509126|ref|YP_001574785.1| lipoyl synthase [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|221141916|ref|ZP_03566409.1| lipoyl synthase [Staphylococcus aureus subsp. aureus str. JKD6009]
 gi|253316399|ref|ZP_04839612.1| lipoyl synthase [Staphylococcus aureus subsp. aureus str.
           CF-Marseille]
 gi|255005714|ref|ZP_05144315.2| lipoyl synthase [Staphylococcus aureus subsp. aureus Mu50-omega]
 gi|257424973|ref|ZP_05601400.1| lipoyl synthase [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257427640|ref|ZP_05604039.1| lipoyl synthase [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257430275|ref|ZP_05606658.1| lipoyl synthase [Staphylococcus aureus subsp. aureus 68-397]
 gi|257432972|ref|ZP_05609332.1| lipoyl synthase [Staphylococcus aureus subsp. aureus E1410]
 gi|257435876|ref|ZP_05611924.1| lipoyl synthase [Staphylococcus aureus subsp. aureus M876]
 gi|257795386|ref|ZP_05644365.1| lipoyl synthase [Staphylococcus aureus A9781]
 gi|258418097|ref|ZP_05682362.1| lipoyl synthase [Staphylococcus aureus A9763]
 gi|258422104|ref|ZP_05685018.1| lipoyl synthase [Staphylococcus aureus A9719]
 gi|258424388|ref|ZP_05687268.1| lipoyl synthase [Staphylococcus aureus A9635]
 gi|258431490|ref|ZP_05688575.1| lipoyl synthase [Staphylococcus aureus A9299]
 gi|258443520|ref|ZP_05691861.1| lipoyl synthase [Staphylococcus aureus A8115]
 gi|258445707|ref|ZP_05693884.1| lipoyl synthase [Staphylococcus aureus A6300]
 gi|258452123|ref|ZP_05700139.1| lipoyl synthase [Staphylococcus aureus A5948]
 gi|258453853|ref|ZP_05701825.1| lipoyl synthase [Staphylococcus aureus A5937]
 gi|262049619|ref|ZP_06022487.1| lipoyl synthase [Staphylococcus aureus D30]
 gi|262052922|ref|ZP_06025103.1| lipoyl synthase [Staphylococcus aureus 930918-3]
 gi|269202539|ref|YP_003281808.1| lipoyl synthase [Staphylococcus aureus subsp. aureus ED98]
 gi|282894731|ref|ZP_06302958.1| lipoyl synthase [Staphylococcus aureus A8117]
 gi|282903462|ref|ZP_06311353.1| lipoyl synthase [Staphylococcus aureus subsp. aureus C160]
 gi|282905240|ref|ZP_06313097.1| lipoyl synthase [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282908220|ref|ZP_06316051.1| lipoyl synthase [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282910501|ref|ZP_06318305.1| lipoyl synthase [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282913697|ref|ZP_06321486.1| lipoyl synthase [Staphylococcus aureus subsp. aureus M899]
 gi|282916174|ref|ZP_06323937.1| lipoyl synthase [Staphylococcus aureus subsp. aureus D139]
 gi|282918623|ref|ZP_06326360.1| lipoyl synthase [Staphylococcus aureus subsp. aureus C427]
 gi|282922204|ref|ZP_06329899.1| lipoyl synthase [Staphylococcus aureus A9765]
 gi|282923613|ref|ZP_06331293.1| lipoyl synthase [Staphylococcus aureus subsp. aureus C101]
 gi|282929122|ref|ZP_06336703.1| lipoyl synthase [Staphylococcus aureus A10102]
 gi|283769990|ref|ZP_06342882.1| lipoic acid synthetase [Staphylococcus aureus subsp. aureus H19]
 gi|283957663|ref|ZP_06375116.1| lipoyl synthase [Staphylococcus aureus subsp. aureus A017934/97]
 gi|284023852|ref|ZP_06378250.1| lipoyl synthase [Staphylococcus aureus subsp. aureus 132]
 gi|293500739|ref|ZP_06666590.1| lipoyl synthase [Staphylococcus aureus subsp. aureus 58-424]
 gi|293509690|ref|ZP_06668401.1| lipoyl synthase [Staphylococcus aureus subsp. aureus M809]
 gi|293524277|ref|ZP_06670964.1| lipoyl synthase [Staphylococcus aureus subsp. aureus M1015]
 gi|296277143|ref|ZP_06859650.1| lipoyl synthase [Staphylococcus aureus subsp. aureus MR1]
 gi|54037741|sp|P65286|LIPA_STAAN RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|54037742|sp|P65287|LIPA_STAAW RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|54041433|sp|P65285|LIPA_STAAM RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|56748985|sp|Q6GB01|LIPA_STAAS RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|56749039|sp|Q6GIG3|LIPA_STAAR RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|71153808|sp|Q5HHG0|LIPA_STAAC RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|123407077|sp|Q2FZX4|LIPA_STAA8 RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|123736000|sp|Q2FIE9|LIPA_STAA3 RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|166230444|sp|A7X0C7|LIPA_STAA1 RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|172048805|sp|A6QFD6|LIPA_STAAE RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|189046794|sp|A6U030|LIPA_STAA2 RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|189046795|sp|A5IRA1|LIPA_STAA9 RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|189046796|sp|A8Z1I3|LIPA_STAAT RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|13700727|dbj|BAB42024.1| lipoic acid synthetase [Staphylococcus aureus subsp. aureus N315]
 gi|14246693|dbj|BAB57086.1| lipoic acid synthetase [Staphylococcus aureus subsp. aureus Mu50]
 gi|21203973|dbj|BAB94672.1| lipoic acid synthetase [Staphylococcus aureus subsp. aureus MW2]
 gi|49241214|emb|CAG39893.1| putative lipoic acid synthetase [Staphylococcus aureus subsp.
           aureus MRSA252]
 gi|49244144|emb|CAG42570.1| putative lipoic acid synthetase [Staphylococcus aureus subsp.
           aureus MSSA476]
 gi|57285802|gb|AAW37896.1| lipoate synthase [Staphylococcus aureus subsp. aureus COL]
 gi|87127525|gb|ABD22039.1| lipoic acid synthetase [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87202176|gb|ABD29986.1| lipoic acid synthetase [Staphylococcus aureus subsp. aureus NCTC
           8325]
 gi|147740426|gb|ABQ48724.1| lipoic acid synthetase [Staphylococcus aureus subsp. aureus JH9]
 gi|149945862|gb|ABR51798.1| lipoic acid synthetase [Staphylococcus aureus subsp. aureus JH1]
 gi|150373808|dbj|BAF67068.1| lipoic acid synthetase [Staphylococcus aureus subsp. aureus str.
           Newman]
 gi|156721385|dbj|BAF77802.1| lipoic acid synthetase [Staphylococcus aureus subsp. aureus Mu3]
 gi|160367935|gb|ABX28906.1| lipooyl synthase [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|257272543|gb|EEV04666.1| lipoyl synthase [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257275833|gb|EEV07306.1| lipoyl synthase [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257279052|gb|EEV09663.1| lipoyl synthase [Staphylococcus aureus subsp. aureus 68-397]
 gi|257282387|gb|EEV12522.1| lipoyl synthase [Staphylococcus aureus subsp. aureus E1410]
 gi|257285067|gb|EEV15186.1| lipoyl synthase [Staphylococcus aureus subsp. aureus M876]
 gi|257789358|gb|EEV27698.1| lipoyl synthase [Staphylococcus aureus A9781]
 gi|257838890|gb|EEV63369.1| lipoyl synthase [Staphylococcus aureus A9763]
 gi|257841917|gb|EEV66352.1| lipoyl synthase [Staphylococcus aureus A9719]
 gi|257845401|gb|EEV69435.1| lipoyl synthase [Staphylococcus aureus A9635]
 gi|257849389|gb|EEV73361.1| lipoyl synthase [Staphylococcus aureus A9299]
 gi|257851304|gb|EEV75245.1| lipoyl synthase [Staphylococcus aureus A8115]
 gi|257855283|gb|EEV78221.1| lipoyl synthase [Staphylococcus aureus A6300]
 gi|257860338|gb|EEV83170.1| lipoyl synthase [Staphylococcus aureus A5948]
 gi|257863718|gb|EEV86474.1| lipoyl synthase [Staphylococcus aureus A5937]
 gi|259159173|gb|EEW44236.1| lipoyl synthase [Staphylococcus aureus 930918-3]
 gi|259162261|gb|EEW46835.1| lipoyl synthase [Staphylococcus aureus D30]
 gi|262074829|gb|ACY10802.1| lipoyl synthase [Staphylococcus aureus subsp. aureus ED98]
 gi|269940427|emb|CBI48804.1| putative lipoic acid synthetase [Staphylococcus aureus subsp.
           aureus TW20]
 gi|282314481|gb|EFB44871.1| lipoyl synthase [Staphylococcus aureus subsp. aureus C101]
 gi|282317757|gb|EFB48129.1| lipoyl synthase [Staphylococcus aureus subsp. aureus C427]
 gi|282320122|gb|EFB50469.1| lipoyl synthase [Staphylococcus aureus subsp. aureus D139]
 gi|282322729|gb|EFB53051.1| lipoyl synthase [Staphylococcus aureus subsp. aureus M899]
 gi|282325893|gb|EFB56201.1| lipoyl synthase [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282327885|gb|EFB58167.1| lipoyl synthase [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282331647|gb|EFB61159.1| lipoyl synthase [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282589314|gb|EFB94408.1| lipoyl synthase [Staphylococcus aureus A10102]
 gi|282593494|gb|EFB98488.1| lipoyl synthase [Staphylococcus aureus A9765]
 gi|282596417|gb|EFC01378.1| lipoyl synthase [Staphylococcus aureus subsp. aureus C160]
 gi|282763008|gb|EFC03141.1| lipoyl synthase [Staphylococcus aureus A8117]
 gi|283460137|gb|EFC07227.1| lipoic acid synthetase [Staphylococcus aureus subsp. aureus H19]
 gi|283470124|emb|CAQ49335.1| lipoic acid synthetase [Staphylococcus aureus subsp. aureus ST398]
 gi|283791114|gb|EFC29929.1| lipoyl synthase [Staphylococcus aureus subsp. aureus A017934/97]
 gi|285816603|gb|ADC37090.1| Lipoate synthase [Staphylococcus aureus 04-02981]
 gi|290921240|gb|EFD98301.1| lipoyl synthase [Staphylococcus aureus subsp. aureus M1015]
 gi|291095744|gb|EFE26005.1| lipoyl synthase [Staphylococcus aureus subsp. aureus 58-424]
 gi|291467787|gb|EFF10302.1| lipoyl synthase [Staphylococcus aureus subsp. aureus M809]
 gi|298694164|gb|ADI97386.1| lipoic acid synthetase [Staphylococcus aureus subsp. aureus ED133]
 gi|302332538|gb|ADL22731.1| Lipoyl synthase, LipA [Staphylococcus aureus subsp. aureus JKD6159]
 gi|302750753|gb|ADL64930.1| Lipoyl synthase, LipA [Staphylococcus aureus subsp. aureus str.
           JKD6008]
 gi|312829321|emb|CBX34163.1| lipoic acid synthetase [Staphylococcus aureus subsp. aureus ECT-R
           2]
 gi|315128398|gb|EFT84408.1| lipoyl synthase [Staphylococcus aureus subsp. aureus CGS03]
 gi|315194456|gb|EFU24848.1| lipoyl synthase [Staphylococcus aureus subsp. aureus CGS00]
 gi|315197277|gb|EFU27615.1| lipoyl synthase [Staphylococcus aureus subsp. aureus CGS01]
 gi|323440923|gb|EGA98631.1| lipoyl synthase [Staphylococcus aureus O11]
 gi|323443786|gb|EGB01398.1| lipoyl synthase [Staphylococcus aureus O46]
 gi|329313592|gb|AEB88005.1| Lipoyl synthase [Staphylococcus aureus subsp. aureus T0131]
 gi|329724483|gb|EGG60990.1| lipoyl synthase [Staphylococcus aureus subsp. aureus 21172]
 gi|329726202|gb|EGG62672.1| lipoyl synthase [Staphylococcus aureus subsp. aureus 21189]
 gi|329733958|gb|EGG70280.1| lipoyl synthase [Staphylococcus aureus subsp. aureus 21193]
          Length = 305

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/182 (17%), Positives = 61/182 (33%), Gaps = 11/182 (6%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V      E+   L++    A  +    +  + +        R    D    
Sbjct: 68  CTRACRFCAVKTGLPNEL--DLNEPERVAESVELMNLKHVVITAV----ARDDLRDAGSN 121

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
            +++ +  + E      +    S      D L         ++ +    V+  +      
Sbjct: 122 VYAETVRKVRERNPFTTIEILPSDMGGDYDALETLMASRPDILNHNIETVRRLTP----R 177

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           +  R T     + + R + ++PDI   S  +VG  GET ++   TMD +           
Sbjct: 178 VRARATYDRTLEFLRRSKELQPDIPTKSSIMVGL-GETIEEIYETMDDLRANDVDILTIG 236

Query: 366 KY 367
           +Y
Sbjct: 237 QY 238


>gi|333029974|ref|ZP_08458035.1| UPF0313 protein ygiQ [Bacteroides coprosuis DSM 18011]
 gi|332740571|gb|EGJ71053.1| UPF0313 protein ygiQ [Bacteroides coprosuis DSM 18011]
          Length = 613

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 49/326 (15%), Positives = 106/326 (32%), Gaps = 63/326 (19%)

Query: 108 CVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVD 167
           C+   + +    +   V         Y    ++++      VV+  Y    + +     D
Sbjct: 237 CLQDKKKQASNFKHIEVQ-----SNSYEANRIIQKVDGRTVVVNPPYPPMTEEQLDRSFD 291

Query: 168 GGYNR-------KRGVTAFLTI------QEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDE 213
             Y R        + + A+  I        GC   C+FC +   +G  I +RS   +++E
Sbjct: 292 LPYMRMPHPKYKNKRIPAYEMIKFSVNLHRGCFGGCSFCTISAHQGKFIANRSKKSIINE 351

Query: 214 ARKLIDNGVCEITLL---GQNVNAWRGKGLDGEKC----------------------TFS 248
            +++I +   +  L    G + N ++  G D E C                         
Sbjct: 352 VKEIIQHPEFKGYLSDLGGPSANMYKMHGKDLEICKKCKRPSCIHPKVCPNLNTDHSALL 411

Query: 249 DLLYSLSEIKGL--------VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLH----LPVQ 296
           D+  ++  + G+        VR        +D     I      +++  ++     +  +
Sbjct: 412 DIYRTVDALPGIKKSFVSSGVRYDLLLHESKDKKVNKINREYTRELIEKHVSGRLKIAPE 471

Query: 297 SGSDRILKSMNRRHTAYEYR-----QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351
             SD +L  M +   +  Y        ++R   +R  +     FI   PG  ++D     
Sbjct: 472 HTSDSVLSIMRKPSFSQFYEFKKIFDQVNRETGLRQQLIPY--FISSHPGCREEDMAELA 529

Query: 352 DLVDKIGYAQAFSFKYSPRLGTPGSN 377
               ++ +       ++P   T  + 
Sbjct: 530 VKTKQLDFHLEQVQDFTPTPMTVATE 555


>gi|295677384|ref|YP_003605908.1| oxygen-independent coproporphyrinogen III oxidase [Burkholderia sp.
           CCGE1002]
 gi|295437227|gb|ADG16397.1| oxygen-independent coproporphyrinogen III oxidase [Burkholderia sp.
           CCGE1002]
          Length = 461

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 40/230 (17%), Positives = 71/230 (30%), Gaps = 19/230 (8%)

Query: 186 CDKFCTFC----VVPYTRGIEISR----SLSQVVDEARKLIDNGVCEITLLGQNVNAWRG 237
           CD  C +C    VV   R               +  A       V ++   G        
Sbjct: 64  CDTVCFYCGCNKVVTKNRAHARPYLERLKREIALQAACFDTQRPVSQLHWGGGTPTFLSH 123

Query: 238 KGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQS 297
             +        +    L + +    +          +  L++  G        L L VQ 
Sbjct: 124 DEMSELMAATREHFNLLPDTEAEYSIEVDPREASPDTIALLRHLG-----FNRLSLGVQD 178

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
              R+ +++NR         ++   R+     +I  D I G P +T   F  T+D + ++
Sbjct: 179 FDPRVQQAINRMQPFEMTASVMQAARAHGFH-SIGVDLIYGLPHQTVASFSRTLDTMLEL 237

Query: 358 GYAQAFSFKYSPRLGTPGSNMLEQVDENV---KAERLLCLQKKLREQQVS 404
              +   F Y+         M  Q+D        ERL  LQ+ +     +
Sbjct: 238 APDRLSVFAYAHMPQL--FKMQRQMDAATLPSSEERLALLQRVVERLTGA 285


>gi|220932251|ref|YP_002509159.1| Radical SAM domain protein [Halothermothrix orenii H 168]
 gi|219993561|gb|ACL70164.1| Radical SAM domain protein [Halothermothrix orenii H 168]
          Length = 626

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 80/222 (36%), Gaps = 15/222 (6%)

Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGV--TAFLTIQEGCDKFCTFCVVPY 197
           ++  + G +       V D  +    VD     K  V   A + I  GC + C FC    
Sbjct: 221 IDTVKPGVKERIKKQVVNDLDKSFHPVDFIVPYKSIVHDRAVVEIARGCTRGCRFCAAGI 280

Query: 198 TRGIEISRSLSQVVDEA-RKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256
           +      R    +V  A + L   G  E++L+  +   + G           DL+ +L+ 
Sbjct: 281 SYRPVRERKKDTIVRLADKILTSTGYEELSLVSLSTIDYSG---------IEDLIKTLAT 331

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY-LHLPVQSGSDRILKSMNRRHTAYEY 315
                R+  +    R     +  A  ++  +    L    ++G+ R+   +N+     + 
Sbjct: 332 RYEDRRISISLPSLRVDRFSVNLA-KEVQRVRKSGLTFAPEAGTQRLRDVINKGVKEEDL 390

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
            + +           +   F++G P ET++D    + L  K+
Sbjct: 391 YEAVTSAFKEGWS-TLKLYFMIGLPTETEEDIAGIVKLAKKV 431


>gi|182678485|ref|YP_001832631.1| lipoyl synthase [Beijerinckia indica subsp. indica ATCC 9039]
 gi|238691210|sp|B2IB58|LIPA_BEII9 RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|182634368|gb|ACB95142.1| lipoic acid synthetase [Beijerinckia indica subsp. indica ATCC
           9039]
          Length = 325

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/231 (14%), Positives = 78/231 (33%), Gaps = 16/231 (6%)

Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
           PE +E      + +  ++ +    E     + G    +    F+ + + C + C FC V 
Sbjct: 48  PEWVET-----QKIVKEHKLVTVCEEAGCPNIGECWAKKHATFMIMGDTCTRACAFCNVK 102

Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256
                 +     +    A  +   G+  + +   +    R    DG    F+ ++ ++ E
Sbjct: 103 TGLPNGL--DPHEPAHIADAVQKLGLSHVVITSVD----RDDLADGGAEHFAQVIRAIRE 156

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
                 +   T         L         +  +    +++   + L S+      +   
Sbjct: 157 ASPKTTIEVLTPDFLRKDGALEIVVAARPDVFNH---NLETVPAKYL-SVRPGARYFHSI 212

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           +++ R++ + P I   S  +VG  GET ++    MD +           +Y
Sbjct: 213 RLLQRVKELDPTIFTKSGIMVGL-GETRNEVLQLMDDLRTADVDFLTIGQY 262


>gi|114566551|ref|YP_753705.1| biotin synthase [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
 gi|114337486|gb|ABI68334.1| biotin synthase [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
          Length = 311

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/213 (14%), Positives = 66/213 (30%), Gaps = 27/213 (12%)

Query: 180 LTIQEGCDKFCTFCVVPYTR-GIEISR-SLSQVVDEARKLIDNGVCEITLLGQNVNAWRG 237
           +     C + C +C +  +   I   R    ++++ A    D G   I L    +++   
Sbjct: 5   IEFSNYCPRNCLYCGLRKSNENIHRYRLDEDKIIELAMMAYDMGFQSIALQSGEIDSQEQ 64

Query: 238 KGLDGE---------KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLM 288
                          +      L     +  L   +Y           L++       L 
Sbjct: 65  VDFLAAIVEKIILSSRQRGQQGLGVTLSMGELSYQQYLQLWQAGAHRYLLRIETSNPQLF 124

Query: 289 PYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFR 348
             +H P Q          +RR       + +D ++ +     + +  +VG PG++++   
Sbjct: 125 KNIHPPSQ--------LYHRR------LECLDALKDI--GYQVGTGIMVGLPGQSNEQLA 168

Query: 349 ATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
             +    K          Y P   TP + + ++
Sbjct: 169 QDLAFFQKRDIDMLGLGPYIPHSDTPLARVPDR 201


>gi|113953106|ref|YP_729605.1| radical SAM domain-containing protein [Synechococcus sp. CC9311]
 gi|113880457|gb|ABI45415.1| radical SAM domain protein [Synechococcus sp. CC9311]
          Length = 879

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 44/253 (17%), Positives = 84/253 (33%), Gaps = 32/253 (12%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGK 238
           + I+ GC + C FC                V++     +   G  + +LL          
Sbjct: 261 VEIRRGCTRGCRFCQPGMLTRPARDVEPEAVIEAIETGMQRTGYSDFSLLS-----LSCS 315

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
                     +L   L+     V L+  +       D +    G        L    ++G
Sbjct: 316 DYLALPAVGVELRNRLA--DRNVTLQLPSQRVDRFDDDIAHILGGSRQA--GLTFAPEAG 371

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPD--IAISSDFIVGFPGETDDDF-------RA 349
           + R+   +N+  T      ++D IR+   +    +   F++G PGETD D        R 
Sbjct: 372 TQRLRDIVNKGLT---DADLVDGIRTAMQNGFRKVKLYFMIGLPGETDADVLGIVETCRM 428

Query: 350 TMDLVDKIGYAQAFSFK--YSPRLGTP--------GSNMLEQVDENVKAERLLCLQKKLR 399
            +D    +G          ++P+  TP           +  Q       +RL  ++    
Sbjct: 429 LLDRCRDLGRLNLNITISNFTPKPHTPFQWHSVSTAEFLRRQQLLREAGKRLRGVRFNFT 488

Query: 400 EQQVSFNDACVGQ 412
           + ++S  +  VG+
Sbjct: 489 DVRLSAMEDFVGR 501


>gi|297203016|ref|ZP_06920413.1| conserved hypothetical protein [Streptomyces sviceus ATCC 29083]
 gi|297148276|gb|EDY56043.2| conserved hypothetical protein [Streptomyces sviceus ATCC 29083]
          Length = 489

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 76/226 (33%), Gaps = 24/226 (10%)

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           Y        +   D      R  + +L I   C++ CTFC        EI     +V   
Sbjct: 35  YPPLKAMGSVDPADFLPQATRMCSIYLHIPF-CEQRCTFC----HFAKEILPPEQRVERY 89

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
            R L         L G +  A       G           ++E+   +R     +   + 
Sbjct: 90  LRTLYAELAGTGALTG-HPTAQTVYFGGGTPS--YLNPRQITEVFARLRESVQVTADTET 146

Query: 274 SDCL-------------IKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
           +  L             + A  +    +      VQS  DRIL+ +NR HTA +  +++ 
Sbjct: 147 TFELHPSVIGAPDYEDRLDAIAEAG--VNRWVFGVQSMEDRILEKLNRGHTAADVHRLLG 204

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
            +     +  +S D I G P +  +++  T+  +   G  +   F 
Sbjct: 205 MLADRGVE-NLSVDLIFGLPYQNLENWYTTICSLVAAGVEKFNIFP 249


>gi|291165719|gb|EFE27767.1| oxygen-independent coproporphyrinogen III oxidase [Filifactor
           alocis ATCC 35896]
          Length = 379

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/207 (16%), Positives = 72/207 (34%), Gaps = 20/207 (9%)

Query: 186 CDKFCTFC------VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
           C + C++C           +   IS    +++     L D  V  I + G       G  
Sbjct: 14  CKQKCSYCDFVSSAQSEDVQTHYISLLCKEILGWKEYLSDRTVKTIFIGG-------GTP 66

Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD-MSDCLIKAHGDLDVLMPYLHLPVQSG 298
                     L  +L  +       ++     + ++   I         +  L + +QS 
Sbjct: 67  SILSVSNMQTLFNTLHSLPIPSETEFSMECNPESVTADKIHCMKQ--NAVNRLSIGLQST 124

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           + + L+ + R H+  ++    ++I+    D  I+ D +   P +T  D   T+  V  + 
Sbjct: 125 NQKELQLLGRCHSYEQFLHAYEQIQQSGFD-NINIDLMFALPNQTIQDHIRTLQKVVSLK 183

Query: 359 YAQAFSFKYSPRLGTPGSNMLEQVDEN 385
                ++      GT    + +QVD +
Sbjct: 184 PNHISAYSLILEEGT---QLKKQVDHH 207


>gi|302558202|ref|ZP_07310544.1| radical SAM domain/B12 binding domain-containing protein
           [Streptomyces griseoflavus Tu4000]
 gi|302475820|gb|EFL38913.1| radical SAM domain/B12 binding domain-containing protein
           [Streptomyces griseoflavus Tu4000]
          Length = 511

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 50/310 (16%), Positives = 94/310 (30%), Gaps = 35/310 (11%)

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRS-PIVNVVVGPQTYYRLPELLER 142
           +     L     +E     V   G       EE++ ++   V+ VV  +    +  LLE 
Sbjct: 86  IPEAIALAARVKREVPGCFVFFGGHSVSFVAEEVIDQAAGAVDAVVRGEGETAVGPLLEA 145

Query: 143 ARFGKRVVD-----------TDYSVEDKFERLSIVDGGYNRKRGVT------AFLTIQEG 185
            R G                    +      L   D   NR+R         A +    G
Sbjct: 146 VRDGGVEGVPGVVTAAGRGPAPLMLHSIDAPLPARDLMRNRRRYFIGELDPCASVEFTRG 205

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C   C+FC      G   S   +   + A + +         +  +V   R         
Sbjct: 206 CPWDCSFCSAWTFYG--RSYRKASP-EAAAEDLARIREPNVFIVDDVAFIR-------PE 255

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL-MPYLHLPVQSGSDRILK 304
             + +   +      +R RY      D+     +       L + Y+ L +++     L 
Sbjct: 256 HGNAIADEVERRG--IRKRYYLETRADVLLRHPEVFERWARLGLRYMFLGMEAIDAEGLD 313

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
              +R +  E  + ++  R +   I ++ + IV  P   ++ FR   +    +       
Sbjct: 314 LYRKRVSPDENLKALETARRL--GIQVAINLIVD-PAWDEERFRVVREFALAVP-EIVHF 369

Query: 365 FKYSPRLGTP 374
              +P  GT 
Sbjct: 370 TVMTPYPGTE 379


>gi|149378014|ref|ZP_01895739.1| lipoic acid synthetase [Marinobacter algicola DG893]
 gi|149357723|gb|EDM46220.1| lipoic acid synthetase [Marinobacter algicola DG893]
          Length = 348

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/186 (16%), Positives = 65/186 (34%), Gaps = 17/186 (9%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V             +  + A+ +   G+  I L   +    R    DG   
Sbjct: 99  CTRACRFCAVDTGNPKGW-LDHEEPENTAKSVELMGLRYIVLTSVD----RDDLDDGGAA 153

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY-LHLPVQSGSDRILK 304
            ++  + ++ +       R        ++         ++ ++   L +  Q+       
Sbjct: 154 HYAACVSAIKQ-------RTPHVAVEALTPDFDAVMAHVEKVVDSGLDVFAQNVETVKRL 206

Query: 305 SMNRRHTAYEYRQ---IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
           +   R     Y +   ++   +  RPD+   +  ++G  GET+++   TMD +  IG   
Sbjct: 207 TTRVRDPRAGYEKTLSVLAHAKQYRPDVLTKTSLMLGL-GETEEEILETMDDLRAIGVDI 265

Query: 362 AFSFKY 367
               +Y
Sbjct: 266 LTLGQY 271


>gi|238796096|ref|ZP_04639607.1| Coproporphyrinogen III oxidase [Yersinia mollaretii ATCC 43969]
 gi|238720041|gb|EEQ11846.1| Coproporphyrinogen III oxidase [Yersinia mollaretii ATCC 43969]
          Length = 437

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/201 (16%), Positives = 70/201 (34%), Gaps = 18/201 (8%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C   CTFC   + +      S ++  D   + +        L G  ++A       G   
Sbjct: 63  CATHCTFCG--FYQNPLQPESTARYTDYLLRELSMEAHSPLLQGGPIHAIYF----GGGT 116

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRD---------MSDCLIKAHGDLDVLMPYLHLPVQ 296
             +     L  I G +R     +   +           D  I A   L+       + +Q
Sbjct: 117 PSALSAQQLHRIIGELRQTLPLAPDCEITVEGRIFNFDDERIDAC--LEAGANRFSIGIQ 174

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
           + + RI + M R+    +  + +  + + R   A+  D + G P +T + ++  + +V +
Sbjct: 175 TFNTRIRQRMGRKADRDQAIRFLTDL-AARDRAAVVCDLMFGLPHQTPETWQEDLAIVRQ 233

Query: 357 IGYAQAFSFKYSPRLGTPGSN 377
           +       +  +    TP + 
Sbjct: 234 LPLDGVDLYALNLLPTTPLAK 254


>gi|331698269|ref|YP_004334508.1| oxygen-independent coproporphyrinogen III oxidase [Pseudonocardia
           dioxanivorans CB1190]
 gi|326952958|gb|AEA26655.1| oxygen-independent coproporphyrinogen III oxidase [Pseudonocardia
           dioxanivorans CB1190]
          Length = 406

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 50/259 (19%), Positives = 85/259 (32%), Gaps = 27/259 (10%)

Query: 165 IVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE--IS-RSLSQVVDEARKLIDNG 221
           + D       GV   +     C   C +C        E   S  S    ++  R+ +   
Sbjct: 18  VPDPEVPTPFGVYVHVPF---CASRCGYCDFNTYTADELADSGASPDGWLEAVRRELAGA 74

Query: 222 VCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDC----- 276
              +     +     G    G           L  +   VR  +  +   +++       
Sbjct: 75  AAVVGDRRVDTVFVGG----GTPSLIG--AQRLGAVLDAVRAEFGLAEGAEVTTESNPES 128

Query: 277 --LIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA-ISS 333
                  G +D     + L +QS +  +L  ++RRHT            +    I  ++ 
Sbjct: 129 TSPEFFAGLVDAGYTRVSLGMQSAASHVLAVLDRRHTPGRAVAAARE--ARAAGIGHVNL 186

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM-----LEQVDENVKA 388
           D I   PGETDDD RA++D V   G     ++      GT  +       L   D++V A
Sbjct: 187 DLIYATPGETDDDLRASLDAVLSAGVDHVSAYSLIVEDGTALARRVRRGELPAPDDDVAA 246

Query: 389 ERLLCLQKKLREQQVSFND 407
            R   L   L E  + + +
Sbjct: 247 ARYEILDDALSEAGLRWYE 265


>gi|159473899|ref|XP_001695071.1| Fe-S oxidoreductase [Chlamydomonas reinhardtii]
 gi|158276450|gb|EDP02223.1| Fe-S oxidoreductase [Chlamydomonas reinhardtii]
          Length = 1017

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/219 (16%), Positives = 70/219 (31%), Gaps = 23/219 (10%)

Query: 169 GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITL 227
            Y         + I+ GC + C FC               +VV    + +   G  E +L
Sbjct: 278 PYVETVHDRMTVEIRRGCTRGCRFCQPGMLTRPARDVEPEKVVAAVEEGLRKTGYKEFSL 337

Query: 228 LGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL 287
           L                     +   + E   ++ L        D +   I   G     
Sbjct: 338 LS-----LSCSDYLSLPSVGLAIKNRMQEEGVVLSLPSQRVDRFDDNIANIIGSGQGRK- 391

Query: 288 MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA--ISSDFIVGFPGETDD 345
              L    ++G+ R+   +N+  T     +++  I++        +   F++G PGETD 
Sbjct: 392 -SGLTFAPEAGTQRLRDIINKGLTNE---ELLRGIKTAWDGGWRQVKLYFMIGLPGETDA 447

Query: 346 D---FRATMDLV-DKIGYAQAF------SFKYSPRLGTP 374
           D      T++ +  +    +           ++P+  TP
Sbjct: 448 DVMGIAETIEWLQRECRTGKWHLAVNVTISNFTPKPHTP 486


>gi|38707306|emb|CAC80908.1| nikJ, nikkomycin biosynthesis protein P1 [Streptomyces tendae]
          Length = 454

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/191 (14%), Positives = 65/191 (34%), Gaps = 15/191 (7%)

Query: 168 GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI-EISRSLSQVVDEARKLIDNGVCEIT 226
            G  R+R +   +    GC   C++C VP      E   ++ + +    +       E  
Sbjct: 199 CGIPRRRELV--VPAARGCPVGCSYCEVPLIYTRKERRLTVERTIQYIEESFAAAPFEYV 256

Query: 227 LLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV 286
                  A+       +K    +L   L+  +G        +    +S+ +I++ G    
Sbjct: 257 -------AFYAPTFTLDKKWMEELCRELTG-RGSPYPWKCATTVHHLSEGMIRSMGAAG- 307

Query: 287 LMPYLHLPVQSGSDRILKSM-NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDD 345
               + + +++   +    +   +  +      +         I ++   IVG PG T +
Sbjct: 308 -CVRISVGLETLDPQEGALLPRAKQKSAMDLDRLSAWCKES-GIELNCFVIVGLPGTTIE 365

Query: 346 DFRATMDLVDK 356
               T++ V +
Sbjct: 366 GAERTIEAVQE 376


>gi|332520040|ref|ZP_08396504.1| oxygen-independent coproporphyrinogen III oxidase [Lacinutrix
           algicola 5H-3-7-4]
 gi|332044599|gb|EGI80793.1| oxygen-independent coproporphyrinogen III oxidase [Lacinutrix
           algicola 5H-3-7-4]
          Length = 375

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 43/238 (18%), Positives = 87/238 (36%), Gaps = 31/238 (13%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEK 244
           C + C +C   +      S S+ +  +    LI    + +       V      G  G  
Sbjct: 11  CKQACHYCDFHF------STSMKKKDELINALIKELEIRKTEFNNITVETIYFGG--GTP 62

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGD---LDVLMPYLH-------LP 294
              S L     EI  ++   Y+        +  ++A+ D      ++   H       + 
Sbjct: 63  SLLSTL-----EINNIIDAVYSNYKVIHNPEITLEANPDDLNNQQIIKLSHSPINRLSIG 117

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           +QS  ++ LK MNR H + E +  +        +I++  D I G PG T+ ++   + + 
Sbjct: 118 IQSFHEKDLKLMNRAHNSSEAKSCLVEATKYFNNISL--DLIYGIPGTTNAEWEENIAIA 175

Query: 355 DKIGYAQAFSFKYSPRLGTPGSNM-----LEQVDENVKAERLLCLQKKLREQQVSFND 407
              G     S+  +    T  ++      ++ VD+ +  E+   L +KL +      +
Sbjct: 176 LSFGINHISSYALTVEPKTALASFIKKGIIDNVDDALAQEQFHILIEKLAQNNFIHYE 233


>gi|329906583|ref|ZP_08274436.1| putative Elongator protein 3 (MiaB family, Radical SAM)
           [Oxalobacteraceae bacterium IMCC9480]
 gi|327547238|gb|EGF32089.1| putative Elongator protein 3 (MiaB family, Radical SAM)
           [Oxalobacteraceae bacterium IMCC9480]
          Length = 705

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 35/228 (15%), Positives = 73/228 (32%), Gaps = 42/228 (18%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEAR----------------------- 215
           + I  GC   CTFC +    G  I SRS   ++ E                         
Sbjct: 345 VNIMRGCFGGCTFCSITEHEGRIIQSRSEPSILREIELIRDKTQGFTGNISDMGGPTANM 404

Query: 216 -------KLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
                  K I+     ++ +   + +  G            L      I G+ ++  ++ 
Sbjct: 405 YRLACKEKSIEESCRRLSCVYPTICSNLGTDH----SKLIQLYRKARAIPGIKKILISSG 460

Query: 269 HPRDMSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRRHTA--YEYRQIIDRI-R 323
              D++    +   +L    +   L +  +   +  L  M +       +++++ ++  +
Sbjct: 461 VRYDLAVRSPEYVKELVTHHVGGLLKIAPEHSEEGPLSKMMKPGMGAYDQFKELFEKYSK 520

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDK--IGYAQAFSFKYSP 369
               +  +   FI   PG TD+D       + K      +  SF  +P
Sbjct: 521 EAGKEQYLIPYFIAAHPGTTDEDMLNLSLWLKKNNFRLDKVQSFMPTP 568


>gi|271498887|ref|YP_003331912.1| hypothetical protein Dd586_0310 [Dickeya dadantii Ech586]
 gi|270342442|gb|ACZ75207.1| conserved hypothetical protein [Dickeya dadantii Ech586]
          Length = 314

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/174 (20%), Positives = 64/174 (36%), Gaps = 8/174 (4%)

Query: 188 KFCTFCVV-PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT 246
             CTFC V  +       RS+++ +      ++     +                  +  
Sbjct: 48  GGCTFCNVASFADEQMQQRSIAEQLAAQAGKVNRASRYLAYF-----QAYTSTYAEVQVL 102

Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306
            S    +L++   +     T       +   + A         +L L +QS  DR L+ +
Sbjct: 103 ASMYRQALAQADIVGLCVGTRPDCVPDTVLDLLADYHEQGYEVWLELGLQSAHDRTLRRI 162

Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
           NR H    Y+Q + R R+    + + S  IVG PGE D+   +T+  V + G  
Sbjct: 163 NRGHDFACYQQTVQRARAR--GLKVCSHLIVGLPGERDEHCLSTLQRVVEAGVE 214


>gi|258450101|ref|ZP_05698197.1| lipoyl synthase [Staphylococcus aureus A6224]
 gi|257856641|gb|EEV79546.1| lipoyl synthase [Staphylococcus aureus A6224]
          Length = 305

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/182 (17%), Positives = 61/182 (33%), Gaps = 11/182 (6%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V      E+   L++    A  +    +  + +        R    D    
Sbjct: 68  CTRACRFCAVKTGLPNEL--DLNEPERVAESVELMNLKHVVITAV----ARDDLRDAGSN 121

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
            +++ +  + E      +    S      D L         ++ +    V+  +      
Sbjct: 122 VYAETVRKVRERNPFTTIEILPSDMGGDYDALETLMASRPDILNHNIETVRRLTP----R 177

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           +  R T     + + R + ++PDI   S  +VG  GET ++   TMD +           
Sbjct: 178 VRARATYDRTLEFLRRSKELQPDIPTKSSIMVGL-GETIEEIYETMDDLRANDVDILTIG 236

Query: 366 KY 367
           +Y
Sbjct: 237 QY 238


>gi|253682078|ref|ZP_04862875.1| radical SAM domain protein [Clostridium botulinum D str. 1873]
 gi|253561790|gb|EES91242.1| radical SAM domain protein [Clostridium botulinum D str. 1873]
          Length = 478

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 47/331 (14%), Positives = 110/331 (33%), Gaps = 33/331 (9%)

Query: 114 GEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYS-----VEDKFERLSIVDG 168
            E+ L+  P   +++G +    + ++++       ++D   +     ++     + I   
Sbjct: 81  REKTLKELPW-GILIGIRPTKIVLDMMDNDFTEDEIIDVLMNEYFARIDKAKLCIDIAKA 139

Query: 169 GYNRKRGVTAFLTIQEG---CDKFCTFCVVPY--TRGIEISRSLSQVVDEARKLIDNGVC 223
              R    +  ++I  G   C   C +C        G    + +   +++ ++ ID    
Sbjct: 140 EKARVNKESKNISIYIGMPFCPTTCLYCSFASNPISGRNTGKMVEPYLEKLKEEIDIIKK 199

Query: 224 EITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG-------LVRLRYTTSHPRDMSDC 276
            I   G N+      G              + ++         +         P  +++ 
Sbjct: 200 FINKKGLNIECVYFGGGTPTSVNNDQFESIIKKVYKSFVENRNVKEFNIECGRPDSINEE 259

Query: 277 LIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFI 336
            +         +  + +  Q+ ++  LK + R HT  +  +  +  R +  D  I+ D I
Sbjct: 260 KLLTMKKYK--VSRISINPQTMNEDTLKLIGRHHTVEDIIKKFNLARKLGFD-NINMDII 316

Query: 337 VGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN--MLEQVDENVKAERLLCL 394
           VG P ET +    T   + K+          S + G+       +++V   +K + L  +
Sbjct: 317 VGLPNETINHIENTCREILKLNPDSLTVHGMSIKRGSKLYEEIYIDKV-RIMKQQSLNEM 375

Query: 395 QKKLREQQVSFN---------DACVGQIIEV 416
             +  +     N            VG +  V
Sbjct: 376 YMRTAKLAKELNMNPYYMYRQKNMVGHMENV 406


>gi|167462259|ref|ZP_02327348.1| hypothetical protein Plarl_06840 [Paenibacillus larvae subsp.
           larvae BRL-230010]
 gi|322383957|ref|ZP_08057687.1| Fe-S oxidoreductase-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
 gi|321151434|gb|EFX44621.1| Fe-S oxidoreductase-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
          Length = 316

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 38/175 (21%), Positives = 62/175 (35%), Gaps = 12/175 (6%)

Query: 181 TIQEGCDKFCTFCVVPYTRGIEISRSLSQV--VDEARKLIDNGVCEITLLGQNVNAWRGK 238
           TI  G    CTFC    +     SR    V   +  R L      +   +G         
Sbjct: 49  TIASG---GCTFCSARGSGDFAGSRRDDHVTQFNTIRDLQHKKWPDAKYIG---YFQAYT 102

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL-DVLMPYLHLPVQS 297
                     +    + E  G+V L    + P  + D +++   +L      ++ L +Q+
Sbjct: 103 NTYAPVEVLREYYEVILEQPGVVGLSI-ATRPDCLPDDVVEYLAELNKRTYLWVELGLQT 161

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352
             +     +NR H    Y   + ++R  R +I I S  I G PGET +    T  
Sbjct: 162 VHESTSDLINRAHDTQCYLNAVGKLR--RHNIRICSHIIYGLPGETHEMMMDTCR 214


>gi|303247070|ref|ZP_07333345.1| Protein of unknown function DUF2344 [Desulfovibrio fructosovorans
           JJ]
 gi|302491496|gb|EFL51381.1| Protein of unknown function DUF2344 [Desulfovibrio fructosovorans
           JJ]
          Length = 857

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 39/262 (14%), Positives = 86/262 (32%), Gaps = 29/262 (11%)

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           V D D +     + +      ++R       + I  GC + C FC           RSL 
Sbjct: 226 VADLDTAPFPTCQVVPFAQAVHDRL-----AVEIARGCTRGCRFCHAGMIYRPVRERSLP 280

Query: 209 QVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
           ++     + +   G  E++ L  +            +  F+  +         + +   +
Sbjct: 281 ELEKLVAEGLSRTGYEELSFLSLSTG-----DFSALESLFAHSIDRCRR--DQIAVSLPS 333

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
                +SD ++     +        +  ++ + R+   +N+  T  +    + ++   R 
Sbjct: 334 LRAGTLSDSILDMMAGIRR--TGATVAPEAATQRLRDVINKGITEEDILAHVAKL--FRH 389

Query: 328 DI-AISSDFIVGFPGETDDDFRATMDLVDKI---------GY-AQAFSFKYSPRLGTPGS 376
               +   F++G P ET++D R   +L  K+              A    + P+  TP  
Sbjct: 390 GWQQVKLYFMIGLPTETEEDVRGIYELAKKVLAQAPPGTKRLQVTAAISPFVPKPHTP-F 448

Query: 377 NMLEQVDENVKAERLLCLQKKL 398
               Q+       R+  L+   
Sbjct: 449 QWEAQISLEQTRARVGYLRDLF 470


>gi|209549210|ref|YP_002281127.1| lipoyl synthase [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|226781795|sp|B5ZNB1|LIPA_RHILW RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|209534966|gb|ACI54901.1| lipoic acid synthetase [Rhizobium leguminosarum bv. trifolii
           WSM2304]
          Length = 323

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 78/220 (35%), Gaps = 11/220 (5%)

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
           R +  ++ +    E     + G    +    F+ + E C + C FC V    G   +  +
Sbjct: 49  RAIVKEHKLVTVCEEAGCPNIGECWDKKHATFMIMGEICTRACAFCNV--ATGKPNALDM 106

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
           ++  + A+ + + G+  + +   +    R    DG    F  +++++        +   T
Sbjct: 107 AEPENVAKAVKEMGLSHVVITSVD----RDDLEDGGAEHFEKVIWAIRAASPATTIEILT 162

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
                    L +       +  +    +++     L ++      +   +++ R++ + P
Sbjct: 163 PDFLKKPGALERVVAAKPDVFNH---NMETVPGNYL-TVRPGARYFHSIRLLQRVKELDP 218

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
            +   S  +VG  GE  ++    MD +           +Y
Sbjct: 219 TMFTKSGIMVGL-GEERNEVLQLMDDLRTADVDFLTIGQY 257


>gi|325264605|ref|ZP_08131335.1| radical SAM domain protein [Clostridium sp. D5]
 gi|324030267|gb|EGB91552.1| radical SAM domain protein [Clostridium sp. D5]
          Length = 586

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 57/333 (17%), Positives = 107/333 (32%), Gaps = 41/333 (12%)

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE-- 141
           +  ++ L     K   D  + + G         +L R P +  ++  +      ELL   
Sbjct: 81  ISYVKQLIVEIKKVLPDTRIWLGGPEVSYNAVRMLERYPQLEGIMRGEGEETFLELLHYY 140

Query: 142 ----------------RARFGKRVVDTDYSVEDKFERLSIVDGGY----NRKRGVTAFLT 181
                           R    K       +   +   LS V   Y      K  +  + +
Sbjct: 141 HGLLDKLEDVRGIVFRRGISSKEPAGIVENPWRQAIELSRVPFVYQDMEKFKNKIIYYES 200

Query: 182 IQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD 241
              GC   C++C+      +   R LS V  E ++ ID  + ++  + +  N        
Sbjct: 201 -SRGCPFSCSYCL-SSIDKVLRFRDLSLVKKELQQFIDAEIPQVKFVDRTFNCRHDH--- 255

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
                 +   Y     KG     +  +      D L K    +   +  L + VQS +  
Sbjct: 256 ----AMAVWSYIADHDKGKTNFHFEVAADLLGEDEL-KLIETMRPGLIQLEIGVQSVNPD 310

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV-----DK 356
            ++ + R     E ++++ RI     ++    D I G P E  + FR + + V     ++
Sbjct: 311 TIREIRRVMRFEEVKRVVSRIHEG-GNVHQHLDLIAGLPFEDYNSFRNSFNEVYALQPEQ 369

Query: 357 IGYAQAFSFKYS---PRLGTPGSNMLEQVDENV 386
           +        K S    R G  G    ++    V
Sbjct: 370 LQLGFLKVLKGSCMQERAGEYGLQYQDRPPFEV 402


>gi|320174860|gb|EFW49981.1| Coproporphyrinogen III oxidase, oxygen-independent [Shigella
           dysenteriae CDC 74-1112]
          Length = 457

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 44/269 (16%), Positives = 91/269 (33%), Gaps = 30/269 (11%)

Query: 157 EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS-------LSQ 209
           ED  E+  +       +R ++ ++ I   C K C FC        +  ++         +
Sbjct: 34  EDFGEQAFLQAVECYPERPLSLYVHIPF-CHKLCYFCGCNKIVTRQQHKADQYLDALEQE 92

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE-----IKGLVRLR 264
           +V  A       V ++   G       G      K   S L+  L E         + + 
Sbjct: 93  IVHRAPLFAGRHVSQLHWGG-------GTPTYLNKAQISRLMKLLRENFQFNADAEISIE 145

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
                PR++   ++            L + VQ  +  + + +NR         +++  R 
Sbjct: 146 V---DPREIELDVLDHLRAEG--FNRLSMGVQDFNKEVQRLVNREQDEEFIFALLNHARE 200

Query: 325 VRPDIAISS-DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQV 382
           +      ++ D I G P +T + F  T+  V ++   +   F Y+       +   ++  
Sbjct: 201 I--GFTSTNIDLIYGLPKQTPESFAFTLKRVAELNPDRLSVFNYAHLPTIFAAQRKIKDA 258

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVG 411
           D     ++L  LQ+ +     S     +G
Sbjct: 259 DLPSPQQKLDILQETIAFLTQSGYQ-FIG 286


>gi|260578255|ref|ZP_05846171.1| oxygen-independent coproporphyrinogen III oxidase [Corynebacterium
           jeikeium ATCC 43734]
 gi|258603557|gb|EEW16818.1| oxygen-independent coproporphyrinogen III oxidase [Corynebacterium
           jeikeium ATCC 43734]
          Length = 409

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 53/122 (43%), Gaps = 6/122 (4%)

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
           + L +QS    +LK + R+HT     +     +    +  I+ D I G P ETD+D R T
Sbjct: 127 ISLGMQSAMGHVLKVLERQHTPGRPIEATREAKRAGFE-HINLDVIYGTPTETDEDLRRT 185

Query: 351 MDLVDKIGYAQAFSFKYSPRLGTPGSNM-----LEQVDENVKAERLLCLQKKLREQQVSF 405
           +D V +       ++      GT  +       L   DE+  A+R   +  +LR+   ++
Sbjct: 186 LDAVLEADVDHVSAYSLIVEDGTAMARKVRRGELPAPDEDTLADRYDAIDARLRDAGFNW 245

Query: 406 ND 407
            +
Sbjct: 246 YE 247


>gi|242238532|ref|YP_002986713.1| lipoyl synthase [Dickeya dadantii Ech703]
 gi|242130589|gb|ACS84891.1| lipoic acid synthetase [Dickeya dadantii Ech703]
          Length = 321

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/183 (18%), Positives = 69/183 (37%), Gaps = 12/183 (6%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V    G  I+   ++    A+ + D G+  + +   +    R    DG   
Sbjct: 94  CTRRCPFCDV--AHGRPITPDANEPEKLAQTIHDMGLRYVVVTSVD----RDDLRDGGAQ 147

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAH-GDLDVLMPYLHLPVQSGSDRILK 304
            F+D + ++     ++++       R   D  +         +  +    V     R+ +
Sbjct: 148 HFADCISAIRRKNPVIKIETLVPDFRGRMDRALDILTATPPDVFNHNLENV----PRLYR 203

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
            +          +++++ + V PDI   S  +VG  GET+D+    M  + + G      
Sbjct: 204 QVRPGADYAWSLKLLEKFKEVHPDIPTKSGLMVGL-GETNDEILDVMRDLRRHGVTMLTL 262

Query: 365 FKY 367
            +Y
Sbjct: 263 GQY 265


>gi|159491038|ref|XP_001703480.1| hypothetical protein CHLREDRAFT_99520 [Chlamydomonas reinhardtii]
 gi|158280404|gb|EDP06162.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 401

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 44/243 (18%), Positives = 74/243 (30%), Gaps = 34/243 (13%)

Query: 186 CDKFCTFCVVPY-TRGI--------EISRSLSQVV-DEARKLIDNGVCEITLLGQNVNAW 235
           C + C +C  P    G         E    +  V    A K           +       
Sbjct: 9   CKRKCFYCDFPVEAVGRDPTAPTKGER---VDTVCTRCASKQSAPYRKRCRWV----CER 61

Query: 236 RGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPV 295
           R           + +L +L    G+      +      +  L +      + +  L + V
Sbjct: 62  RHTPSLLPPELLARILEALDARFGIAAGAEVSLEADPGTFDLARLREYRRLGVSRLSVGV 121

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS-DFIVGFPGETDDDFRATMDLV 354
           Q+    +L +  R H   E    I+ +R+    +A  S D I G PG T D + A++   
Sbjct: 122 QAFQQELLTACGRGHDLLEAEAAIEAVRAA--GLASWSLDLISGLPGLTPDMWAASLQRA 179

Query: 355 DKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQII 414
              G      +      GTP            + +R   L+    E  V       G+  
Sbjct: 180 VAAGPDHVSVYDLQVEEGTPF----------ERWQRAGRLRLPADEAAVE----MYGKAS 225

Query: 415 EVL 417
           +VL
Sbjct: 226 QVL 228


>gi|119477450|ref|ZP_01617641.1| lipoyl synthase [marine gamma proteobacterium HTCC2143]
 gi|119449376|gb|EAW30615.1| lipoyl synthase [marine gamma proteobacterium HTCC2143]
          Length = 334

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/215 (15%), Positives = 68/215 (31%), Gaps = 12/215 (5%)

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           + +    E     + G     G   F+ + E C + C FC V    G   +  + +    
Sbjct: 74  HKLASVCEEAQCPNLGECFSGGTATFMIMGEICTRRCPFCDV--AHGRPNALDIDEPRQL 131

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI-KGLVRLRYTTSHPRD 272
           A  + D G+  + +   +    R    DG    F+D +     +  G+            
Sbjct: 132 ALAIADMGLKYVVITSVD----RDDLKDGGAQHFADCIRETRALMPGIKVETLVPDFRGR 187

Query: 273 MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAIS 332
           M   L     +   +  +    V S    + + +           ++   +  RPD+   
Sbjct: 188 MDVALDILVQEAPDVFNHNLESVPS----LYRKIRPGSDYQWSLDLLKNYKLRRPDVLTK 243

Query: 333 SDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           S  ++G  GET ++    M  +           +Y
Sbjct: 244 SGLMLGL-GETAEELIQVMKDMRDHDIDMITMGQY 277


>gi|302869066|ref|YP_003837703.1| lipoic acid synthetase [Micromonospora aurantiaca ATCC 27029]
 gi|315504461|ref|YP_004083348.1| lipoic acid synthetase [Micromonospora sp. L5]
 gi|302571925|gb|ADL48127.1| lipoic acid synthetase [Micromonospora aurantiaca ATCC 27029]
 gi|315411080|gb|ADU09197.1| lipoic acid synthetase [Micromonospora sp. L5]
          Length = 329

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 78/220 (35%), Gaps = 26/220 (11%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC +   +  E      +    A  +   G+   T+ G      R    DG   
Sbjct: 97  CTRRCDFCQIDTGKPAEF--DADEPRRVAESVAAMGLRYATITGV----ARDDLPDGGAW 150

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
            +++ +  +  ++    +         + + L +  G    ++ +    V     RI K 
Sbjct: 151 LYAETVRQIHALQSGCGVELLIPDFNAVPEQLAEVFGSRPEVLAHNVETV----PRIFKR 206

Query: 306 MNRRHTAYEYRQIIDRIRSVRPD-IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
           +     A+ Y + +D IR  R D +   S+ I+G  GE   +    +  + + G      
Sbjct: 207 IRP---AFRYERSLDVIRQARADGLVTKSNLILGM-GEERAEVSQALRDLHEAGCELITI 262

Query: 365 FKY---SPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQ 401
            +Y   SPR           V   VK E  + L+++  E 
Sbjct: 263 TQYLRPSPRHH--------PVTRWVKPEEFVELREEAEEI 294


>gi|262041281|ref|ZP_06014492.1| lipoyl synthase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC
           13884]
 gi|259041397|gb|EEW42457.1| lipoyl synthase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC
           13884]
          Length = 321

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/182 (17%), Positives = 67/182 (36%), Gaps = 10/182 (5%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V    G  ++   ++    A+ + D G+  + +   +    R    DG   
Sbjct: 94  CTRRCPFCDV--AHGRPVAPDANEPQKMAQTIADMGLRYVVVTSVD----RDDLRDGGAQ 147

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
            F+D + ++ E    +++       R   D  +          P +         R+ + 
Sbjct: 148 HFADCISAIREKNPSIKIETLVPDFRGRMDRALDILTVTP---PDVFNHNLENVPRLYRQ 204

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           +          ++++R +   P+I   S  +VG  GET+D+    M  + + G       
Sbjct: 205 VRPGADYNWSLKLLERFKEAHPEIPTKSGLMVGL-GETNDEIIEVMRDLRRHGVTMLTLG 263

Query: 366 KY 367
           +Y
Sbjct: 264 QY 265


>gi|225175914|ref|ZP_03729906.1| Radical SAM domain protein [Dethiobacter alkaliphilus AHT 1]
 gi|225168502|gb|EEG77304.1| Radical SAM domain protein [Dethiobacter alkaliphilus AHT 1]
          Length = 354

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 44/252 (17%), Positives = 88/252 (34%), Gaps = 27/252 (10%)

Query: 138 ELLERARFGKRVVDTDY------SVEDKFERLSIVDGGYNRKRG----VTAFLTIQEGCD 187
           E++E+A    R+  TD       S ED     +  DG    + G    +   +     C+
Sbjct: 7   EIIEQAVNTGRLTKTDVVTLLSSSGEDAAALFAAADGVRKSQMGDEVHLRGLIEFSNYCE 66

Query: 188 KFCTFCVVPYTRGIEISRSLSQ--VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           + CT+C +  +        + +  ++  A   +  G   + L         G+    +  
Sbjct: 67  RNCTYCGLRSSHKDLARYRMEEEEILAVAAAAVPLGYRTVVLQS-------GEDSYYDAQ 119

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
           T + +++ L +  GLV         RD       A  D         L  ++    +  +
Sbjct: 120 TVASIVHRLKKELGLVITLSLGERNRDEYKLWKDAGADR------YLLKHETADADLYAA 173

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           ++   T    RQ +  +R +     + S  +VG PG+T +     +  +  +    A   
Sbjct: 174 LHPDMTWERRRQSLLTLREL--GYQVGSGCMVGLPGQTLNALAEDLLFLQALDVEMAGIG 231

Query: 366 KYSPRLGTPGSN 377
            + P   TP + 
Sbjct: 232 PFVPNPHTPLAK 243


>gi|168181648|ref|ZP_02616312.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Clostridium botulinum Bf]
 gi|237796415|ref|YP_002863967.1| coproporphyrinogen III oxidase [Clostridium botulinum Ba4 str. 657]
 gi|182675087|gb|EDT87048.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Clostridium botulinum Bf]
 gi|229261506|gb|ACQ52539.1| oxygen-independent coproporphyrinogen III oxidase [Clostridium
           botulinum Ba4 str. 657]
          Length = 380

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/199 (16%), Positives = 75/199 (37%), Gaps = 14/199 (7%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C++C        E    +  V   +++++DN   +I      +    G        
Sbjct: 19  CMQKCSYCDFTSYSKKE-DLMMEYVKALSKEIVDNTKNKIIKT---IFIGGGTPTYLSLE 74

Query: 246 TFSDLLYSLSEIKGLVRLRYTTS----HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
             + L ++L  I     + +T         +    ++K+ G     +  L + +QS  + 
Sbjct: 75  ALNILKHTLKTIDKKENIEFTVEGNPGTFTEKKLKMLKSMG-----VNRLSIGLQSSKNS 129

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
           +LK++ R H+  ++       R    +  I+ D +   P ++ DD++ T+  V  +    
Sbjct: 130 LLKTLGRIHSFEDFVHSFKMARKEGFN-NINVDLMFALPNQSLDDWKDTLLTVVDLSPEH 188

Query: 362 AFSFKYSPRLGTPGSNMLE 380
              +      GT   N+ +
Sbjct: 189 LSCYSLIIEEGTNFYNLYK 207


>gi|210623842|ref|ZP_03294091.1| hypothetical protein CLOHIR_02042 [Clostridium hiranonis DSM 13275]
 gi|210153337|gb|EEA84343.1| hypothetical protein CLOHIR_02042 [Clostridium hiranonis DSM 13275]
          Length = 376

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/213 (16%), Positives = 71/213 (33%), Gaps = 20/213 (9%)

Query: 186 CDKFCTFCVVPYTRGIEIS--RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
           C K C +C     +       R L  +  E +         I                G 
Sbjct: 11  CVKKCKYCDFNSFKMNLCDKKRYLDDLKKEIKMYSGECADRIVDT----------IFFGG 60

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL-------MPYLHLPVQ 296
                     +  +   V+  +  S   +++        D   L       +  L + +Q
Sbjct: 61  GTPSILSCDEIESLMKCVKDSFNISDDTEITMECNPGTIDRKKLETIKRSGINRLSIGLQ 120

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
           +  +  L  + R HT  E+ +     RSV  D  I+ D +   P +T+DD++ +++ V  
Sbjct: 121 AVQNHHLSYIGRIHTYEEFEKNFKEARSVGFD-NINIDLMFALPNQTEDDWKESLEKVVG 179

Query: 357 IGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAE 389
           +      ++      GT   +M E+ +  +  E
Sbjct: 180 LNPEHISAYSLIMEEGTELFDMYEREEFELMDE 212


>gi|206900394|ref|YP_002249900.1| radical SAM [Dictyoglomus thermophilum H-6-12]
 gi|206739497|gb|ACI18555.1| radical SAM [Dictyoglomus thermophilum H-6-12]
          Length = 589

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 56/307 (18%), Positives = 103/307 (33%), Gaps = 52/307 (16%)

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTI------QEGCDKFCTFCVVPYTRGIEI- 203
           D D+     F RL         K  + AF T+        GC   CTFC +   +G ++ 
Sbjct: 272 DLDFIYSLPFMRLPHPSY----KEKIPAFETVKTSIVSHRGCFGSCTFCSLNLHQGWQVI 327

Query: 204 SRSLSQVVDEARKLIDNGVCEITLL---GQNVNAWRGK--------GLDGEKCTFSDLLY 252
           SRS   +++E  +L  +     T+    G   N +R +              C F D+  
Sbjct: 328 SRSEKSILEEIYRLTKHREFRGTISDVGGPTANMYRLRCKIHNIPGSCPERDCLFPDVCK 387

Query: 253 SL-----SEIKGLVRLRYTTSHPRDM------------SDCLIKAHGDLDVLMPYLHLPV 295
            L     +++  L +++                      +  I        +  +L    
Sbjct: 388 YLEVDHSAQLNLLKKIKEIEKVKHVFIASGIRYDIALKDEYYIGEIIKEGYIGGHLSAAP 447

Query: 296 QSGSDRILKSMNRRHTAYEYRQIID----RIRSVRPDIAISSDFIVGFPGETDDDFRATM 351
           +   D +L+ M +      Y + +D     ++  R ++ I   FI   PG T  D     
Sbjct: 448 EHVKDHVLEIMKKP-KFKVYEEFVDIFERNLKKYRKELYIIPYFISAHPGATIKDAWDLA 506

Query: 352 DLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERL--------LCLQKKLREQQV 403
             +  +G+       Y+P   TP S         ++ E++          LQ+ L + + 
Sbjct: 507 MYIKGLGHYLEQIQDYTPLPLTPASCAFYTEYHTLRKEKIYVAKTYEDRRLQRALAQYKD 566

Query: 404 SFNDACV 410
             N   +
Sbjct: 567 KKNREFL 573


>gi|172046806|sp|Q4L4T8|LIPA_STAHJ RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
          Length = 306

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 41/256 (16%), Positives = 90/256 (35%), Gaps = 20/256 (7%)

Query: 112 AEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYN 171
            + EEILR+   + + +     Y   + + R +         ++V ++ +  +I +    
Sbjct: 3   TKNEEILRKPDWLKIKLNTNENYIGLKKMMREKN-------LHTVCEEAKCPNIHECWGA 55

Query: 172 RKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQN 231
           R+     F+ +   C + C FC V      E+   L++    A  +    +  + +    
Sbjct: 56  RR--TATFMILGAVCTRACRFCAVKTGLPNEL--DLNEPERVAESVELMNLKHVVITAV- 110

Query: 232 VNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL 291
               R    D     +++ +  + E      +    S      + L         ++ + 
Sbjct: 111 ---ARDDLRDAGSNVYAETVRKVRERNPFTTIEILPSDMGGDYEALETLMASKPDILNHN 167

Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351
              V+  +      +  R T     + + R + ++PDI   S  +VG  GET ++   TM
Sbjct: 168 IETVRRLTP----RVRARATYERTLEFLRRSKELQPDIPTKSSLMVGL-GETIEEIYETM 222

Query: 352 DLVDKIGYAQAFSFKY 367
           D +           +Y
Sbjct: 223 DDLRANDVDILTIGQY 238


>gi|195952967|ref|YP_002121257.1| Radical SAM domain protein [Hydrogenobaculum sp. Y04AAS1]
 gi|195932579|gb|ACG57279.1| Radical SAM domain protein [Hydrogenobaculum sp. Y04AAS1]
          Length = 371

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 48/263 (18%), Positives = 93/263 (35%), Gaps = 46/263 (17%)

Query: 185 GCDKFCTFCVVPYTRGIEISRS-----------LSQVVDEARKLIDNGVCEITLLGQNVN 233
           GC   C +C +   R  E S+            L  ++++A+++   G  E   + Q  +
Sbjct: 54  GCHANCAYCGLQKAREEEFSKRNFIRVEWPTIKLDDILEKAKQV---GHVERLCIAQITH 110

Query: 234 AWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHL 293
               +     K     +LY L    G         +        I+ +  L      + +
Sbjct: 111 PRSIRDT---KTVLEKVLYEL----GDQIFVSLLINATGTRYQDIEDYKKLG--ADTVTV 161

Query: 294 PVQSGSDRIL-----KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFR 348
            +   +  +      KS+N  H    + ++++    V  D       +VG  GET+ +  
Sbjct: 162 ALDCATPELFEKIRGKSLNSPHKFDYFWKVLEWSAEVMGDGFAGCHLVVGL-GETEQEMI 220

Query: 349 ATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD------ENVKAERLLCLQKKLREQQ 402
             +  V  +G A+   F + P  G   S M  +          V+  R +   +  R + 
Sbjct: 221 ERIQKVRDLG-ARTHLFSFWPEEG---SLMENEKPCPAPQYRRVQMARYIIDNEYGRYED 276

Query: 403 VSFNDACVGQIIEV-----LIEK 420
           + FN+   GQ+I+      L E+
Sbjct: 277 MKFNEK--GQVIDFGIKKDLFEE 297


>gi|325283804|ref|YP_004256345.1| Lipoyl synthase [Deinococcus proteolyticus MRP]
 gi|324315613|gb|ADY26728.1| Lipoyl synthase [Deinococcus proteolyticus MRP]
          Length = 349

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 75/220 (34%), Gaps = 9/220 (4%)

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
           R +  ++ +    E     + G    RG   F+ +   C + C FC V       +   L
Sbjct: 67  RSIVKEHGLHTVCEEAMCPNIGECWSRGTATFMLMGHICTRACRFCAVDTGNPRGL-LDL 125

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
            +    A  +   G+  + L   +    R    DG    F+  + ++       R+   T
Sbjct: 126 EEPQKVAESVQLMGLKYVVLTSVD----RDDLPDGGAYHFAKTVTAIKRANPGTRVESLT 181

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
                   C ++   D  V     +L         ++     +  ++  +++   ++ RP
Sbjct: 182 PDFGGNKAC-VELVLDSGVDTYAQNLETVERLTHPVRDRRAGY--WQTIEVLRHAKAYRP 238

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           D+   +  ++G  GET ++    M  +   G       +Y
Sbjct: 239 DVVTKTSIMLGL-GETREEVTQAMKDLRSAGVDVVTFGQY 277


>gi|320538851|ref|ZP_08038527.1| lipoate synthase [Serratia symbiotica str. Tucson]
 gi|320031011|gb|EFW13014.1| lipoate synthase [Serratia symbiotica str. Tucson]
          Length = 321

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/211 (15%), Positives = 70/211 (33%), Gaps = 12/211 (5%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V    G  +    ++    A+ + D G+  + +   +    R    DG   
Sbjct: 94  CTRRCPFCDV--VHGRPMIPDANEPEKLAQTIADMGLRYVVITSVD----RDDLRDGGAQ 147

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
            F+D + ++      +++       R   +  ++         P +         R+ + 
Sbjct: 148 HFADCIAAIRAKNPSIKIETLVPDFRGRMERALEILTKTP---PDVFNHNLENVPRVYRQ 204

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           +          ++++R +   P I   S  +VG  GET+ +    M  +   G       
Sbjct: 205 VRPGANYAWSLKLLERFKEAHPHIPTKSGLMVGL-GETNAEIIEVMRDLRHHGVTMLTLG 263

Query: 366 KYSP--RLGTPGSNMLEQVDENVKAERLLCL 394
           +Y    R   P    +   + +   E    L
Sbjct: 264 QYLQPSRHHLPVQRYVSPAEFDEMKEEAKAL 294


>gi|320010836|gb|ADW05686.1| Radical SAM domain protein [Streptomyces flavogriseus ATCC 33331]
          Length = 641

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 72/419 (17%), Positives = 125/419 (29%), Gaps = 74/419 (17%)

Query: 52  GYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVV----VAG 107
           G+   N    AD I    C +     + V      IR  K      G + ++       G
Sbjct: 150 GHAAFNPEPIADFI---DCAVIGDGEQAVLEITEIIRAWKAEGRPGGREEVLFRLARTGG 206

Query: 108 CVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVD 167
                  +        +  VV  ++                V+D D     K   + + +
Sbjct: 207 VYVPGFYDVEYLPDGRIGRVVPNRSGVPWR------VSKHTVMDLDEWPYPKQPLVPLAE 260

Query: 168 GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEIT 226
             + R       + I  GC + C FC           RS++ + +   K +   G  E+ 
Sbjct: 261 TVHERMS-----VEIFRGCTRGCRFCQAGMITRPVRERSITGIGEMVEKGLKATGFEEVG 315

Query: 227 LLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV 286
           LL     +       G+        Y+  +I     L   ++     +  L         
Sbjct: 316 LLS---LSSADHTEIGDIAKGLADRYTDDKIG----LSLPSTRVDAFNVDLANELTRNGR 368

Query: 287 LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR-----IRSVRPDIAISSDFIVGFPG 341
               L    + GS+R+ K +N+  +  +  + +        R V+        F+ G P 
Sbjct: 369 -RSGLTFAPEGGSERMRKVINKMVSEEDLIRTVATAYGNGWRQVK------LYFMCGLPT 421

Query: 342 ETDDDFRATMDLV-------------DKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           ETD+D     D+              + I         + P+  TP      Q+      
Sbjct: 422 ETDEDVLQIGDMAVNVIAKGREVSGQNDIRCT-VSIGGFVPKPHTP-FQWAPQLSAEDTD 479

Query: 389 ERLLCLQKKLR---------------------EQQVSFNDACVGQIIEVLIEKHGKEKG 426
            RL  L+ K+R                     E  +S  D  VG +I  + E  G+  G
Sbjct: 480 ARLKKLRDKIRDDKKYGRSIGFRYHDGKPGIVEGLLSRGDRRVGSVIREVYESGGRFDG 538


>gi|237751127|ref|ZP_04581607.1| conserved hypothetical protein [Helicobacter bilis ATCC 43879]
 gi|229373572|gb|EEO23963.1| conserved hypothetical protein [Helicobacter bilis ATCC 43879]
          Length = 337

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 57/164 (34%), Gaps = 12/164 (7%)

Query: 221 GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL---VRLRYTTSHPRDMSDCL 277
           G+ +  +  Q+         D  K  ++  L  L ++ G+    R+    S   D     
Sbjct: 116 GIKKYMVYFQSFTNTY-APFDTLKALYTKALK-LPDVVGMSIGTRVDCVDSKLLDFLGEF 173

Query: 278 IKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIV 337
           +K   ++     +L   +QS  +  LK  NR HT      +    R     I + +  I 
Sbjct: 174 VKGGKEI-----WLEYGIQSIYEETLKLTNRGHTMEGVESLFKETRKR--GIKVCAHLIY 226

Query: 338 GFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           G P E+ D    ++  +   G             GT  + M ++
Sbjct: 227 GLPNESVDMMIHSLQTILSYGVDSLKIHPLYVVEGTALARMYKK 270


>gi|270308792|ref|YP_003330850.1| radical SAM/B12 binding domain protein [Dehalococcoides sp. VS]
 gi|270154684|gb|ACZ62522.1| radical SAM/B12 binding domain protein [Dehalococcoides sp. VS]
          Length = 715

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 48/245 (19%), Positives = 77/245 (31%), Gaps = 22/245 (8%)

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKF-CTFCVVPYTRG 200
           R    +  +  D      FE L++ D            L    GC    C FC      G
Sbjct: 282 RVNQTRPSLKIDSLPTPCFEGLNLGDYLSPE---PVLPLLASRGCYWGKCAFCSHNEAYG 338

Query: 201 -IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
                R   ++ ++ R L             +  A+  +GL       + L   L     
Sbjct: 339 WRYQKRDAVKIAEDMRVLSVKHQ-------IDKFAFADEGL--APSLANKLSEELINRGI 389

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
                         +  L             L L ++SG +RIL+ M +  T     Q+ 
Sbjct: 390 KASCSVNVRLELGFTPELCFKMRKAG--FRVLFLGLESGCNRILEHMEKGTTKEIAAQVC 447

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF---KYSPRLGTPGS 376
             I   R DI       +GFP E+  +   T+D + +       SF    +S   G+  S
Sbjct: 448 RNI--YRADIWNHLYVFLGFPTESAAEAGETIDFLAENR-DIIHSFNIDFFSLGKGSAVS 504

Query: 377 NMLEQ 381
            + E+
Sbjct: 505 KLPEK 509


>gi|162421099|ref|YP_001605673.1| radical SAM family protein [Yersinia pestis Angola]
 gi|162353914|gb|ABX87862.1| radical SAM protein, TIGR01212 family [Yersinia pestis Angola]
          Length = 327

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/108 (26%), Positives = 43/108 (39%), Gaps = 11/108 (10%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +L L +Q+ +D+ LK +NR H    Y+Q   R R+    + +    IVG PGE     R 
Sbjct: 163 WLELGLQTANDKTLKRINRGHDFACYQQTARRARAR--GLKVCCHLIVGLPGEDRAQGRE 220

Query: 350 TMDLVDKIGYAQAFSFKYSPRLG-TPGSNMLEQVDENVKAERLLCLQK 396
           T++ V   G             G T             +A RL  L+ 
Sbjct: 221 TLEKVVTTGVDGIKLHPLHIVEGSTMAKAW--------RAGRLTALED 260


>gi|15596743|ref|NP_250237.1| coproporphyrinogen III oxidase [Pseudomonas aeruginosa PAO1]
 gi|107100976|ref|ZP_01364894.1| hypothetical protein PaerPA_01002006 [Pseudomonas aeruginosa PACS2]
 gi|116049490|ref|YP_791707.1| coproporphyrinogen III oxidase [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218892498|ref|YP_002441365.1| coproporphyrinogen III oxidase [Pseudomonas aeruginosa LESB58]
 gi|254239894|ref|ZP_04933216.1| oxygen-independent coproporphyrinogen III oxidase [Pseudomonas
           aeruginosa 2192]
 gi|313106551|ref|ZP_07792779.1| oxygen-independent coproporphyrinogen III [Pseudomonas aeruginosa
           39016]
 gi|12230916|sp|P77915|HEMN_PSEAE RecName: Full=Oxygen-independent coproporphyrinogen-III oxidase;
           Short=Coprogen oxidase; Short=Coproporphyrinogenase
 gi|9947505|gb|AAG04935.1|AE004582_13 oxygen-independent coproporphyrinogen III oxidase [Pseudomonas
           aeruginosa PAO1]
 gi|115584711|gb|ABJ10726.1| oxygen-independent coproporphyrinogen III [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|126193272|gb|EAZ57335.1| oxygen-independent coproporphyrinogen III oxidase [Pseudomonas
           aeruginosa 2192]
 gi|218772724|emb|CAW28509.1| oxygen-independent coproporphyrinogen III oxidase [Pseudomonas
           aeruginosa LESB58]
 gi|310879281|gb|EFQ37875.1| oxygen-independent coproporphyrinogen III [Pseudomonas aeruginosa
           39016]
          Length = 460

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 81/223 (36%), Gaps = 19/223 (8%)

Query: 159 KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC----VVPYTRGIEISRS-LSQVVDE 213
            F++L  +         ++ ++ I   C   C +C    V+   RG   S   L+++V E
Sbjct: 37  PFDQLHALRDSRKAGHPLSLYVHIPF-CANICYYCACNKVITKDRG--RSAPYLARLVRE 93

Query: 214 ARK-----LIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
                     +  V ++   G          L          L  L +  G   +     
Sbjct: 94  IEIVSRHLSREQVVEQLHFGGGTPTFLSPGQLRELMSQLRTHLNLLDDDSGDYGIEIDPR 153

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
                +  L++  G        + L VQ     + K++NR  T  E R I++  R+++  
Sbjct: 154 EADWSTMGLLRELG-----FNRVSLGVQDFDMEVQKAVNRMQTPEETRTIVEAARTLQYR 208

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
            +I+ D I G P +T D F  T+D V  +   +   F Y+   
Sbjct: 209 -SINLDLIYGLPKQTPDSFARTVDEVIALQPDRLSVFNYAHLP 250


>gi|323694148|ref|ZP_08108327.1| radical SAM domain-containing protein [Clostridium symbiosum
           WAL-14673]
 gi|323501865|gb|EGB17748.1| radical SAM domain-containing protein [Clostridium symbiosum
           WAL-14673]
          Length = 610

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 62/349 (17%), Positives = 111/349 (31%), Gaps = 50/349 (14%)

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVV--------------- 128
           +  ++ L     K    L + + G      GEE+LR  P V  V+               
Sbjct: 80  ILYVKELVRDLKKVMPQLTIWLGGPEVSYNGEEMLRELPEVTGVMAGEGEETFFRLVESC 139

Query: 129 ----------GPQTYYRLPELLERARFG----KRVVDTDYSVEDKFERLSIVDGGYNRKR 174
                     G +  +   E L + R G    K               LS +   Y    
Sbjct: 140 GMSFMESKEAGKRWNHSRLEELLKDRPGFIFRKSDGTISAGAPAPLTELSRIPFSYGSLE 199

Query: 175 GVTA---FLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQN 231
           G+     +     GC   C++C+          R L  V  E    ++  V ++  + + 
Sbjct: 200 GLAHRIIYYESSRGCPFSCSYCL-SSIDKTVRFRDLDMVKKELSFFLEKRVPQVKFVDRT 258

Query: 232 VNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL 291
            N  +   ++  K         L    G+    +  S      + L         L+  L
Sbjct: 259 FNCRKSHAMEIWKF-------ILEHDNGVTNFHFEISADLLDEEELALLKQMRPGLI-QL 310

Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351
            + VQ+ +   ++ + RR    +  + +  + S R +I    D I G P E  + FR + 
Sbjct: 311 EIGVQTTNPEAIREIRRRMDLEKLERNVHAVNSFR-NIHQHLDLIAGLPYEGYESFRKSF 369

Query: 352 DLV-------DKIGYAQAFSFKYSPRL-GTPGSNMLEQVDENVKAERLL 392
           + V        ++G+ +     Y   + G  G     Q    V + R L
Sbjct: 370 NDVYRMEPEQLQLGFLKVLKGSYMEEMAGEYGLLYKSQPPYEVLSTRWL 418


>gi|311278064|ref|YP_003940295.1| Radical SAM domain-containing protein [Enterobacter cloacae SCF1]
 gi|308747259|gb|ADO47011.1| Radical SAM domain protein [Enterobacter cloacae SCF1]
          Length = 724

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 45/261 (17%), Positives = 85/261 (32%), Gaps = 48/261 (18%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDN--GVCEIT--LLGQNVNA 234
           + I  GC   C+FC +    G  I SRS   +++E   + D   G   +   L G   N 
Sbjct: 380 INIMRGCFGGCSFCSITEHEGRIIQSRSEDSIINEIEAIRDTVPGFTGVISDLGGPTANM 439

Query: 235 WR----------------------GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
           +                          +D       +L     ++KG+ ++   +    D
Sbjct: 440 YMLRCKSPRAEQTCRRLSCVYPDICPHMDTNHEPTINLYRRARDLKGIKKILIASGVRYD 499

Query: 273 MSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRRH--TAYEYRQIIDRI-RSVRP 327
           ++    +   +L    +  YL +  +   +  L  M +    +   ++Q+ D   +    
Sbjct: 500 IAVEDPRYIKELATHHVGGYLKIAPEHTEEGPLSKMMKPGMGSYDRFKQLFDTYSKQAGK 559

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGY--AQAFSFKYSPRL-------------G 372
           +  +   FI   PG  D+D       + +  +   Q  +F  SP               G
Sbjct: 560 EQYLIPYFISAHPGTRDEDMVNLALWLKRHRFRLDQVQNFYPSPLANSTTMYYTGKNPLG 619

Query: 373 TPGSNMLE-QVDENVKAERLL 392
             G    +  V +  K  RL 
Sbjct: 620 KIGYKSEDVVVPKGDKQRRLH 640


>gi|289425685|ref|ZP_06427456.1| coproporphyrinogen III oxidase domain protein [Propionibacterium
           acnes SK187]
 gi|289153904|gb|EFD02598.1| coproporphyrinogen III oxidase domain protein [Propionibacterium
           acnes SK187]
          Length = 117

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 50/118 (42%), Gaps = 6/118 (5%)

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           +QS S  +L+ + R HT           R+   +  ++ D I G P ETDD+ R T+D V
Sbjct: 1   MQSASPGVLQVLERAHTPGRAFDAAREARAAGFE-HVNLDMIYGTPTETDDNVRETLDRV 59

Query: 355 DKIGYAQAFSFKYSPRLGTPGSNMLEQ-----VDENVKAERLLCLQKKLREQQVSFND 407
            + G     ++      GT  +  + +      DE+V A R   +   L  +   + +
Sbjct: 60  LETGVDHVSAYSLIVEDGTRMARKVNKGILPAPDEDVLARRYEMISSTLESEGFEWYE 117


>gi|260828540|ref|XP_002609221.1| hypothetical protein BRAFLDRAFT_125969 [Branchiostoma floridae]
 gi|306755874|sp|C3Y3G4|LIAS_BRAFL RecName: Full=Lipoyl synthase, mitochondrial; AltName: Full=Lipoate
           synthase; Short=LS; Short=Lip-syn; AltName: Full=Lipoic
           acid synthase; Flags: Precursor
 gi|229294576|gb|EEN65231.1| hypothetical protein BRAFLDRAFT_125969 [Branchiostoma floridae]
          Length = 376

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 37/187 (19%), Positives = 67/187 (35%), Gaps = 17/187 (9%)

Query: 186 CDKFCTFCVVPYTRGIEISRS---LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG 242
           C + C FC V        S      ++ V  A  +   GV  I +   +    R    DG
Sbjct: 133 CTRGCRFCSVKTA----RSPPPLDPNEPVHTAEAISRWGVDYIVITSVD----RDDVADG 184

Query: 243 EKCTFSDLLYSLSE-IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
               FS+ +  + + I  ++    T     DM      A   LDV    +          
Sbjct: 185 GSAHFSECVKEIKKRIPSMLVECLTPDFRGDMEAVATVAQSGLDVFAHNIETV--KRLTP 242

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
            ++    ++   +  Q++  ++   PD+   S  ++G  GETD + R  M+ + + G   
Sbjct: 243 FVRDPRAKY--DQSLQVLSHVKKTVPDMVTKSSIMLGL-GETDQEVRTAMEDLRRAGVDC 299

Query: 362 AFSFKYS 368
               +Y 
Sbjct: 300 LTLGQYM 306


>gi|91794973|ref|YP_564624.1| coproporphyrinogen III oxidase [Shewanella denitrificans OS217]
 gi|91716975|gb|ABE56901.1| oxygen-independent coproporphyrinogen III oxidase [Shewanella
           denitrificans OS217]
          Length = 446

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/236 (14%), Positives = 76/236 (32%), Gaps = 21/236 (8%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C K C +C         I+R   +       L    +    L     +    +   G   
Sbjct: 51  CAKLCYYC----GCNKVITRHAHKADQYLEYLASEIIKRAPLFK---HYQVTQMHWGGGT 103

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL-------MPYLHLPVQSG 298
                   +  +  L++  +  +   + S  +     +L +L          + + VQ  
Sbjct: 104 PTFLTPAQILSLTALLKQHFNFASQGEFSIEIDPREIELSMLDTLKEAGFNRISVGVQDF 163

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           +  +  ++NR         +I R + +   ++ + D I G P +T   F  T+  + ++ 
Sbjct: 164 NKEVQIAVNREQDEQFIFDLIARAKDL-GFVSTNVDLIYGLPLQTPASFAKTIKRIIELS 222

Query: 359 YAQAFSFKYSPRLGTPGSNM---LEQVDENVKAERLLCLQKKLREQQVSFNDACVG 411
             +   F Y+       +      EQ+      +RL  L + +     +     +G
Sbjct: 223 PDRLSVFNYAHLPSRFAAQRKIKDEQLP--TAQQRLDILHQTIESLTAAGYQ-FIG 275


>gi|307946652|ref|ZP_07661987.1| putative Fe-S oxidoreductase [Roseibium sp. TrichSKD4]
 gi|307770316|gb|EFO29542.1| putative Fe-S oxidoreductase [Roseibium sp. TrichSKD4]
          Length = 578

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 41/273 (15%), Positives = 80/273 (29%), Gaps = 42/273 (15%)

Query: 133 YYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTF 192
            +   +LL+    G +V++   SV     +               + ++   GC   C F
Sbjct: 218 PHPAYDLLDSDVDGFKVLEEYLSVPVWGGQAKNSSATSFEMSRSISTVS-SRGCPFACKF 276

Query: 193 CVVPYTRGI--EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDL 250
           C     RG   E +  +    + A + +D         G +                S+L
Sbjct: 277 C----FRGAQGERNYGVRSAENLAAEFMDYKARY----GVDFVGLLDDNFMVSPKRISEL 328

Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCL-------------IKAHGDLDVLMPYLHLPVQS 297
              L       +LR+      D +  L             ++          Y+    +S
Sbjct: 329 ADILEPYAAAGQLRWGAHGRLDEAADLRPTRDGGYKSAEVLRVREMRRAGCMYIGFGAES 388

Query: 298 GSDRILKSMNRRH-----------TAYEYRQIIDRIRS-VRPDIAISSDFIVGFPGETDD 345
            S   L+ M +                  R +   IR+ +   I  +  +I+G+PGE  +
Sbjct: 389 ASPMTLEEMGKGGFMLTVGLERIGGFEFPRAMTQGIRNTLEAGIQANCTWIMGYPGERLE 448

Query: 346 DFRATMDLVDKIG-YAQAFSFKYSPRLGTPGSN 377
           D + ++  +     +            GT    
Sbjct: 449 DLQTSLGFIKWQQEFVTEGH-----APGTDAYE 476


>gi|306821367|ref|ZP_07454975.1| radical SAM domain protein [Eubacterium yurii subsp. margaretiae
           ATCC 43715]
 gi|304550585|gb|EFM38568.1| radical SAM domain protein [Eubacterium yurii subsp. margaretiae
           ATCC 43715]
          Length = 296

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 85/225 (37%), Gaps = 25/225 (11%)

Query: 169 GYNRKRGVTAFLTIQEGCD-KFCTFCVVPYTRGIEISRSLSQVVDEA--RKLIDNGVCEI 225
                   +  + +  GC    CTFC + Y       RSL  + ++    K    G+  I
Sbjct: 8   YRPPSEAYSLIVQVTTGCSQNTCTFCAM-YKEARFKIRSLKDIKEDFLYAKAHYRGIDRI 66

Query: 226 TLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV----RLRYTTSHPRDMSDCLIKAH 281
            L             D     F DLL  L  I+ L     R+    S    +S    +  
Sbjct: 67  FL----------ADGDALIMPFEDLLEILKFIEELFPNLDRVSLYASPRSILSKTKEQLE 116

Query: 282 GDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPG 341
                 +   +L ++SGSD++LK + +R TA E  +    IR     I +S+  I+G  G
Sbjct: 117 TLRAHNLKLAYLGIESGSDKVLKDIKKRATADEIIRAGKLIRQA--GIKLSATLIMGLGG 174

Query: 342 --ETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384
             ++ +  + ++++++ I            + GT    + + V E
Sbjct: 175 VKDSKEHVKGSIEVLNAINPDYLGLMTLLVKSGT---EIYDDVQE 216


>gi|299533440|ref|ZP_07046822.1| Radical SAM [Comamonas testosteroni S44]
 gi|298718646|gb|EFI59621.1| Radical SAM [Comamonas testosteroni S44]
          Length = 639

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/195 (16%), Positives = 68/195 (34%), Gaps = 19/195 (9%)

Query: 180 LTIQEGCDKF-CTFCVVPYTR-GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG 237
           LT+  GC    C+FC V     G     S + + D    ++          GQ    +  
Sbjct: 367 LTVAHGCYWKKCSFCDVSLDYIGRYEGASAAVLADRIEAIVAE-------TGQTGFHFVD 419

Query: 238 KGLDGE--KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPV 295
           +    +  K    +L+   + I     +R+     +  +  L +   D   +   +   +
Sbjct: 420 EAAPPKALKALSQELIARNAGISWWGNVRF----EKTFTPELAELMADSGCIA--ISGGL 473

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
           +  SDR+L  M +  T  +  ++          I + +  + GFP +T  D    ++ V 
Sbjct: 474 EVASDRLLALMKKGVTVDQVARVTKAFSEA--GILVHAYLMYGFPTQTVQDTVDALEYVR 531

Query: 356 KIGYAQAFSFKYSPR 370
           ++         +  R
Sbjct: 532 QLFLNGCIQSGFFHR 546


>gi|291530742|emb|CBK96327.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Eubacterium siraeum 70/3]
          Length = 364

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 37/208 (17%), Positives = 71/208 (34%), Gaps = 21/208 (10%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITL-LGQNVNAWRGKGLDGEK 244
           C   C +C          S +     D A +  D  +  +   L QN N  R   +    
Sbjct: 12  CLSKCPYC-------DFYSVAFDS--DTANRYKDAVIRNLRYYLSQNEN-LRFDTVYFGG 61

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLM-------PYLHLPVQS 297
            T   L   + +I  +  ++   +   +++        D + L          +   +QS
Sbjct: 62  GTPILLWREICDI--MDEIQPYIASDAEITVEANPCCTDENALCSLKAHNVNRISFGLQS 119

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
           G D  LK++ RRH +      +        D  IS D ++G P +T D    T+  +  +
Sbjct: 120 GIDNELKALGRRHNSKVGADAVKMAYKAGFD-NISGDIMLGIPLQTSDSLIETISYMTSL 178

Query: 358 GYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
             +   ++       TP +     + + 
Sbjct: 179 PLSHISAYMLKIEPDTPFAKKELILPDE 206


>gi|282849924|ref|ZP_06259307.1| radical SAM domain protein [Veillonella parvula ATCC 17745]
 gi|282580361|gb|EFB85761.1| radical SAM domain protein [Veillonella parvula ATCC 17745]
          Length = 575

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 43/267 (16%), Positives = 98/267 (36%), Gaps = 40/267 (14%)

Query: 175 GVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA 234
           G    + +  GC + C FC+  Y   +   R L  + +   +    G     +       
Sbjct: 247 GAMYIIEVARGCGRHCRFCMAGYCFRVPRVRPLDILKEGVERAEKLGKKVGLMGA----- 301

Query: 235 WRGKGLDGEKCTFSDLLYSLSEIK-GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHL 293
                       + ++   ++ I+   +R    +     ++  ++    D       + +
Sbjct: 302 --------AISDYPEVDELVNYIRSKDMRYSCASLRADSLTQAVVDGLADSGQ--KTITI 351

Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA---- 349
             ++GS+R+ + +N+  +  E+ Q    + +      +    ++G P ETD+D  A    
Sbjct: 352 APETGSERLRRVINKGIS-EEHLQNAATLSAKSGIQHMRLYIMIGLPTETDEDIEAIVGL 410

Query: 350 ---TMDLVDKIGYA---QAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQV 403
              T   ++K+G           + P+  TP   M     + V+ + L  ++K L++   
Sbjct: 411 AERTQAHMEKVGCKGRLTLSINPFIPKPFTPFQWMAMDNQKAVEKK-LQYIKKALQKN-- 467

Query: 404 SFNDACVGQIIEVLIEKHGKEKGKLVG 430
                   + IEVL+E    ++  + G
Sbjct: 468 --------RRIEVLVE--SPKEAYIQG 484


>gi|264676224|ref|YP_003276130.1| radical SAM [Comamonas testosteroni CNB-2]
 gi|262206736|gb|ACY30834.1| Radical SAM [Comamonas testosteroni CNB-2]
          Length = 636

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/195 (16%), Positives = 68/195 (34%), Gaps = 19/195 (9%)

Query: 180 LTIQEGCDKF-CTFCVVPYTR-GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG 237
           LT+  GC    C+FC V     G     S + + D    ++          GQ    +  
Sbjct: 364 LTVAHGCYWKKCSFCDVSLDYIGRYEGASAAVLADRIEAIVAE-------TGQTGFHFVD 416

Query: 238 KGLDGE--KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPV 295
           +    +  K    +L+   + I     +R+     +  +  L +   D   +   +   +
Sbjct: 417 EAAPPKALKALSQELIARNAGISWWGNVRF----EKTFTPELAELMADSGCIA--ISGGL 470

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
           +  SDR+L  M +  T  +  ++          I + +  + GFP +T  D    ++ V 
Sbjct: 471 EVASDRLLALMKKGVTVDQVARVTKAFSEA--GILVHAYLMYGFPTQTVQDTVDALEYVR 528

Query: 356 KIGYAQAFSFKYSPR 370
           ++         +  R
Sbjct: 529 QLFLNGCIQSGFFHR 543


>gi|237729944|ref|ZP_04560425.1| conserved hypothetical protein [Citrobacter sp. 30_2]
 gi|226908550|gb|EEH94468.1| conserved hypothetical protein [Citrobacter sp. 30_2]
          Length = 723

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 45/280 (16%), Positives = 88/280 (31%), Gaps = 48/280 (17%)

Query: 161 ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLID 219
              +  D        +   + I  GC   C+FC +    G  I SRS   +++E   + D
Sbjct: 361 PHPAYGDSRIPAYEMIRFSINIMRGCFGGCSFCSITEHEGRIIQSRSEDSIINEIEAIRD 420

Query: 220 N--GVCEIT--LLGQNVNAWR----------------------GKGLDGEKCTFSDLLYS 253
              G   +   L G   N +                          +D       +L   
Sbjct: 421 TVPGFTGVISDLGGPTANMYMLRCKSPRAEQTCRRLSCVYPDICPHMDTNHEPTINLYRR 480

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRRH- 310
             ++KG+ ++   +    D++    +   +L    +  YL +  +   +  L  M +   
Sbjct: 481 ARDLKGIKKILIASGVRYDIAVEDPRYIKELATHHVGGYLKIAPEHTEEGPLSKMMKPGM 540

Query: 311 -TAYEYRQIIDRI-RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY--AQAFSFK 366
            +   ++++ D   +    +  +   FI   PG  D+D       + +  +   Q  +F 
Sbjct: 541 GSYDRFKELFDTYSKQAGKEQYLIPYFISAHPGTRDEDMVNLALWLKQRRFRLDQVQNFY 600

Query: 367 YSPRL-------------GTPGSNMLE-QVDENVKAERLL 392
            SP               G  G    +  V +  K  RL 
Sbjct: 601 PSPLANSTTMYYTGKNPLGKIGYKSEDVVVPKGDKQRRLH 640


>gi|222529926|ref|YP_002573808.1| coproporphyrinogen III oxidase [Caldicellulosiruptor bescii DSM
           6725]
 gi|222456773|gb|ACM61035.1| Coproporphyrinogen dehydrogenase [Caldicellulosiruptor bescii DSM
           6725]
          Length = 471

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 44/213 (20%), Positives = 87/213 (40%), Gaps = 22/213 (10%)

Query: 171 NRKRGVTAFLTIQEG---CDKFCTFCVVPYTRGIEISRSLSQVV-----------DEARK 216
           NR    +A L I  G   C   C +C        E++R +  ++           ++  +
Sbjct: 149 NRLDPFSACLYI--GIPICPTKCLYCSFSC---HEMTRQVKSLLGMYTDSLICELEKTYQ 203

Query: 217 LIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDC 276
            I+    +I  +     +    G++  K  F++L  +L +   +  + +    P  +   
Sbjct: 204 KIEENRNKIVAIYFGGGSPAVLGIENIKKIFTNLFENLEK-DHIREITFEAGRPDTIDVS 262

Query: 277 LIKAHGDLDVLMP-YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDF 335
           L++   D    +   L +  QS +D  LK + R HT  + ++     +       I+SD 
Sbjct: 263 LLELLADQSKELNIRLCINPQSSNDNTLKIIGRNHTFEDIKRAFALAKEYGFK-NINSDV 321

Query: 336 IVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
           I+G PGE ++D++ T++ V K+  A       S
Sbjct: 322 ILGLPGEDENDYKKTIEDVLKLSPASITVHTLS 354


>gi|297581001|ref|ZP_06942926.1| conserved hypothetical protein [Vibrio cholerae RC385]
 gi|297534827|gb|EFH73663.1| conserved hypothetical protein [Vibrio cholerae RC385]
          Length = 316

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 47/235 (20%), Positives = 79/235 (33%), Gaps = 23/235 (9%)

Query: 181 TIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLG--QNVNAWRGK 238
           TI  G    CTFC V      E  R    +  + +            L   Q   +   +
Sbjct: 43  TIGRG---GCTFCNVASFADEETQR--QSIQAQLKDRAGEIKRAKKYLAYFQAYTSTYAE 97

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
               +  +  +     ++I GL         P  +   L         +  +L L +Q+ 
Sbjct: 98  AQVLK--SMYEQALEEADIVGLCVGTRPDCVPDAVLKLLADYVQQGYEI--WLELGLQTA 153

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
            D+ LK +NR H    Y +I  + R++   I + +  IVG PGE   +   T+  V K+G
Sbjct: 154 HDQTLKRINRGHDFACYAEITAKARAL--GIKVCTHLIVGLPGEGRTENLTTLQQVLKVG 211

Query: 359 YAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQI 413
                        G+  +          KA R   L    +++ VS     +   
Sbjct: 212 TDGIKLHGLHIVEGSTMA----------KAWRAGRLTVLDQDEYVSIACEMIRST 256


>gi|148238707|ref|YP_001224094.1| Fe-S oxidoreductase [Synechococcus sp. WH 7803]
 gi|147847246|emb|CAK22797.1| Fe-S oxidoreductase [Synechococcus sp. WH 7803]
          Length = 943

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 41/255 (16%), Positives = 79/255 (30%), Gaps = 36/255 (14%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGK 238
           + I+ GC + C FC                V++     ++  G  + +LL          
Sbjct: 261 VEIRRGCTRGCRFCQPGMLTRPARDVEPEAVIEAVEAGMERTGYSDFSLLS-----LSCS 315

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
                     +L   L+     V L+  +       + +    G        L    ++G
Sbjct: 316 DYLALPAVGVELRNRLA--DRNVTLQLPSQRVDRFDEDIAHILGGARQA--GLTFAPEAG 371

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPD--IAISSDFIVGFPGETDDD---FRATMDL 353
           + R+   +N+  T      ++  IR+   +    +   F++G PGETD D      T  +
Sbjct: 372 TQRLRDIVNKGLTDE---DLLQGIRTAMQNGYRKVKLYFMIGLPGETDADVLGIAETCRM 428

Query: 354 VDKIGYA------QAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQ------ 401
           +                  ++P+  TP       V       R   L+   R        
Sbjct: 429 LQDCCRDLGRLSLNITISNFTPKPHTPFQ--WHSVSTEEFLRRQQLLRDAGRRLRGVRFN 486

Query: 402 ----QVSFNDACVGQ 412
               ++S  +  VG+
Sbjct: 487 FTDVRLSAMEDFVGR 501


>gi|123969233|ref|YP_001010091.1| Fe-S oxidoreductase [Prochlorococcus marinus str. AS9601]
 gi|123199343|gb|ABM70984.1| Fe-S oxidoreductase [Prochlorococcus marinus str. AS9601]
          Length = 539

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/182 (16%), Positives = 59/182 (32%), Gaps = 12/182 (6%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISR-SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK 238
           +  + GC   C FCV     G ++    +++V+ E ++L D GV             +  
Sbjct: 256 VQTKRGCPHNCCFCVYTVVEGKQVRVNPINEVIKEMKQLYDLGVRGFWFTDAQFIPAKKH 315

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
             D +      LL ++ +               ++   L +   D    M Y  + + SG
Sbjct: 316 IEDAK-----SLLQAIKDQGWDDINWAAYIRADNIDAELAQLMVDTG--MSYFEIGITSG 368

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGF--PGETDDDFRATMDLVDK 356
           S  +++ M   +           +  V+            F    ET    R T+    +
Sbjct: 369 SQELVRKMRLAYDLETVLNNCRML--VKSGFKNHVSVNYSFNVFDETPSTIRQTIAYHRE 426

Query: 357 IG 358
           + 
Sbjct: 427 LE 428


>gi|221069675|ref|ZP_03545780.1| Radical SAM domain protein [Comamonas testosteroni KF-1]
 gi|220714698|gb|EED70066.1| Radical SAM domain protein [Comamonas testosteroni KF-1]
          Length = 636

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/195 (16%), Positives = 68/195 (34%), Gaps = 19/195 (9%)

Query: 180 LTIQEGCDKF-CTFCVVPYTR-GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG 237
           LT+  GC    C+FC V     G     S + + D    ++          GQ    +  
Sbjct: 364 LTVAHGCYWKKCSFCDVSLDYIGRYEGASAAVLADRIEAIVAE-------TGQTGFHFVD 416

Query: 238 KGLDGE--KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPV 295
           +    +  K    +L+   + I     +R+     +  +  L +   D   +   +   +
Sbjct: 417 EAAPPKALKALSQELIARNAGISWWGNVRF----EKTFTPELAELMADSGCIA--ISGGL 470

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
           +  SDR+L  M +  T  +  ++          I + +  + GFP +T  D    ++ V 
Sbjct: 471 EVASDRLLALMKKGVTVDQVARVTKAFSEA--GILVHAYLMYGFPTQTVQDTVDALEYVR 528

Query: 356 KIGYAQAFSFKYSPR 370
           ++         +  R
Sbjct: 529 QLFLNGCIQSGFFHR 543


>gi|119945931|ref|YP_943611.1| radical SAM domain-containing protein [Psychromonas ingrahamii 37]
 gi|119864535|gb|ABM04012.1| Radical SAM N-terminal domain protein [Psychromonas ingrahamii 37]
          Length = 770

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 61/337 (18%), Positives = 110/337 (32%), Gaps = 55/337 (16%)

Query: 159 KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKL 217
           +    S  D        +   + I  GC   CTFC +    G  I SRS   ++ E   +
Sbjct: 365 RIPHPSYGDAKIPAYDMIRFSINIMRGCFGGCTFCSITEHEGRVIQSRSEDSIIKEIEII 424

Query: 218 IDN--GVCEIT--LLGQNVNAWR----------------------GKGLDGEKCTFSDLL 251
            D   G   +   L G   N +R                         L+ +     +L 
Sbjct: 425 RDTVPGFTGVISDLGGPTANMYRLKCKSPKAEQTCRRLSCVYPDICHHLNTDHEHTINLY 484

Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRR 309
               ++ G+ ++   +    D++    +   +L    +  YL +  +      L  M + 
Sbjct: 485 RRARKLTGIKKILIASGVRYDIAVEDPRYVKELVEHHVGGYLKIAPEHTEKGPLDKMMKP 544

Query: 310 H--TAYEYRQIIDRI-RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK--IGYAQAFS 364
              +   ++Q+ ++  ++      +   FI   PG TD D       +        Q  +
Sbjct: 545 TMSSYEAFKQMFEKYSKAAGKKQYLIPYFISAHPGTTDQDMINLALWLKSNNFKLDQVQN 604

Query: 365 FKYSPRLGTPGSNML-------EQV---DENV---KAERLLCLQKKLREQQVSFNDACVG 411
           F  SP      + M         +V    E V   K  R   L K +    V  N   + 
Sbjct: 605 FYPSPLAN--ATTMYHTEKNPLHKVSKDSEEVISPKGGRQRKLHKAILRYHVPENWPLIR 662

Query: 412 QIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIG 448
           + ++ L     ++   L+G+SP    V   S+N   G
Sbjct: 663 ETLKKL--GLARK---LIGKSPQ-HLVPPESRNELQG 693


>gi|116624602|ref|YP_826758.1| radical SAM domain-containing protein [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116227764|gb|ABJ86473.1| Radical SAM domain protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 524

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 62/395 (15%), Positives = 128/395 (32%), Gaps = 47/395 (11%)

Query: 9   GVAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADL-IVL 67
               M    + Q  + Q+  +   G          M  M     Y   +++  A + +V+
Sbjct: 41  NTQPMTDPELVQYALDQKIGLVGIG---------AMTRMIAKA-YRVADALRAAGIKVVM 90

Query: 68  NTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVV 127
              H+ E   E     LGR    +++     G+        VA A   E+      V+  
Sbjct: 91  GGPHVTECPDE----ALGRDGGGRHADAIALGEADETWPRIVADAAKGELREVYKPVDAF 146

Query: 128 VGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQ--EG 185
                  + P L +  +   + +D D            +   Y         + I+   G
Sbjct: 147 G----QEQKPSLKDYPQIPWQKLDIDQ-FNRIPGFFKRIMRHYGHAWETFHIIPIESGRG 201

Query: 186 CDKFCTFCVVPYTRGIE-ISRSLSQVVDEA-----RKLIDNGVCEITLLGQNVNAWRGKG 239
           C   C FC V    G     R+   +V E      R    +G   +  +  N        
Sbjct: 202 CPYGCEFCTVTGFFGDSIRFRTNESIVTEMLALKERAKASSGKIAVFFVDDNFAIN---- 257

Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
           +   K    D++ + +++  + ++        ++ D + ++ G       ++ + ++S  
Sbjct: 258 VKRTKSLLRDIIAAGAQLSWVGQISANLLRDEELLDLIAESGG------KWIFIGMESLD 311

Query: 300 DRILKSMNRRHTA-YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
              L S+N+      EY  ++ ++     ++   + FI G   +T      T++ +    
Sbjct: 312 VANLASVNKSFNKPSEYAGVLQKLAQR--NVYAITSFIFGLDNDTPGVASRTLEQIRDWP 369

Query: 359 YAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLC 393
                  + +P   TP  + L       K  RL  
Sbjct: 370 PVLPVFGQITPFPATPLYDRLA------KEGRLTR 398


>gi|239928745|ref|ZP_04685698.1| radical SAM family protein [Streptomyces ghanaensis ATCC 14672]
 gi|291437068|ref|ZP_06576458.1| radical SAM [Streptomyces ghanaensis ATCC 14672]
 gi|291339963|gb|EFE66919.1| radical SAM [Streptomyces ghanaensis ATCC 14672]
          Length = 499

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 54/311 (17%), Positives = 97/311 (31%), Gaps = 37/311 (11%)

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPI-VNVVVGPQTYYRLPELLER 142
           +     L     +E     V + G       EE+L ++   V+ VV  +    +  LLE 
Sbjct: 74  IPEAIALATRVKQEVPGCFVFLGGHSVSFVAEEVLEQAEGAVDAVVRGEGEPAVAPLLEA 133

Query: 143 ARFGKRVVD-----------TDYSVEDKFERLSIVDGGYNRKRGVT------AFLTIQEG 185
            R G                    +      L   D   NR+R         A      G
Sbjct: 134 VRDGGVEGVPGVVTTAGRGPAPLMLHGIDTPLPARDLMRNRRRYFIGELDPCASAEFTRG 193

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C   C+FC      G   S   +   + A + + N       +  +V   R +  D    
Sbjct: 194 CPWDCSFCSAWTFYG--RSYRKASP-EAAAQDLANVREPNVFIVDDVAFIRPEHGD---- 246

Query: 246 TFSDLLYSLSEIKGL-VRLRYTTSHPRDMSDCLIKAHGDLDVL-MPYLHLPVQSGSDRIL 303
                    +E++   +R RY      D+     +       L + Y+ L +++     L
Sbjct: 247 ------AIAAEVERRGIRKRYYLETRADVLLRHPEVFERWARLGLRYMFLGMEAIDAEGL 300

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
               +R +  E  + ++  R +   I  + + IV  P   ++ FR   +    +      
Sbjct: 301 DLYRKRVSPDENLKALETARRL--GIKAAINLIVD-PSWDEERFRVVREFALAVP-EIVH 356

Query: 364 SFKYSPRLGTP 374
               +P  GT 
Sbjct: 357 FTVMTPYPGTE 367


>gi|254448476|ref|ZP_05061936.1| lipoic acid synthetase [gamma proteobacterium HTCC5015]
 gi|198261859|gb|EDY86144.1| lipoic acid synthetase [gamma proteobacterium HTCC5015]
          Length = 325

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 40/264 (15%), Positives = 81/264 (30%), Gaps = 20/264 (7%)

Query: 111 QAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDT------DYSVEDKFERLS 164
              G E + R P+   V   +T+ R P  +     G   V        ++++    E   
Sbjct: 19  HQRGAEKMARIPV--KVEETKTFQRKPSWIRAKSQGSPEVQRIKRLLREHNLHSVCEEAQ 76

Query: 165 IVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCE 224
             + G     G   F+ + + C + C FC V + R   +     +    A  +   G+  
Sbjct: 77  CPNLGECFSHGTATFMIMGDICTRRCPFCDVAHGRPNPL--DAKEPKQLAETIQLLGLSY 134

Query: 225 ITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL 284
           + +   +    R    DG    F+D +  +  +    ++       R   D  I    + 
Sbjct: 135 VVITSVD----RDDLKDGGAGHFADCIREIRALNPETKIEVLVPDFRGRMDKAILCFEET 190

Query: 285 DVLMPYLHLPVQSGSDRIL-KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGET 343
              +          S   L +++           +I   +   P     S  +VG   E 
Sbjct: 191 PPDV----FNHNLESVPRLYRAVRPGSDYEWSLDLISEFKRRHPHAPTKSGLMVGLGEEI 246

Query: 344 DDDFRATMDLVDKIGYAQAFSFKY 367
           ++  +  M  +           +Y
Sbjct: 247 EE-IKQVMRDLRAHDCDMLTIGQY 269


>gi|167766643|ref|ZP_02438696.1| hypothetical protein CLOSS21_01149 [Clostridium sp. SS2/1]
 gi|167711766|gb|EDS22345.1| hypothetical protein CLOSS21_01149 [Clostridium sp. SS2/1]
 gi|291558660|emb|CBL37460.1| putative oxygen-independent coproporphyrinogen III oxidase
           [butyrate-producing bacterium SSC/2]
          Length = 382

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 41/226 (18%), Positives = 79/226 (34%), Gaps = 23/226 (10%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C   C +C     R  E         +     +     E+   G+ + A     +     
Sbjct: 15  CKSKCKYCDFCSFRAEE---------ETIHAYLGKLKEELIFWGKKLAARDVVTVFIGGG 65

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKA---HGDLDVLMPY-------LHLPV 295
           T S L     +I+ +    +   H  + ++  I+A     DL  L  Y       +   +
Sbjct: 66  TPSYLRRE--DIQMICETIFEHFHICEDAEITIEANPGTVDLKKLCTYRENGINRISFGL 123

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
           QS     L+ + R HT  E+ Q  D  R     + I+ D +   P +T   +   +  + 
Sbjct: 124 QSTVKEELEYLGRIHTYEEFLQSFDWARQA-GFLNINVDLMSAVPKQTLTSYEENLRKIA 182

Query: 356 KIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQ 401
           K+      ++      GTP      +++E + +E    L  ++ E+
Sbjct: 183 KLSPEHISAYSLIIEEGTPFYE-DNKLEELLPSEEDEVLMYRMTEK 227


>gi|153941159|ref|YP_001392239.1| coproporphyrinogen III oxidase [Clostridium botulinum F str.
           Langeland]
 gi|152937055|gb|ABS42553.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Clostridium botulinum F str. Langeland]
 gi|295320237|gb|ADG00615.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Clostridium botulinum F str. 230613]
          Length = 380

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/196 (16%), Positives = 74/196 (37%), Gaps = 8/196 (4%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C++C        E    +  V   ++++++N   +I      +    G        
Sbjct: 19  CMQKCSYCDFTSYSKKE-DLMMEYVKALSKEIVNNTKNKIIKT---IFIGGGTPTYLSLE 74

Query: 246 TFSDLLYSLSEIKGLVRLRYTTS-HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304
             + L  SL  I     + +T   +P   +   +K    +   +  L + +QS  + +LK
Sbjct: 75  ALNILKNSLKTIDKKENIEFTVEGNPGTFTGKKLKLLKSMG--VNRLSIGLQSSKNSLLK 132

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
           ++ R H+  ++       R    +  I+ D +   P ++ DD++ T+  V  +       
Sbjct: 133 TLGRIHSFEDFVHSFKMARKEGFN-NINVDLMFALPNQSLDDWKETLLKVVDLSPEHLSC 191

Query: 365 FKYSPRLGTPGSNMLE 380
           +      GT   N+ +
Sbjct: 192 YSLIIEEGTNFYNLYK 207


>gi|170728044|ref|YP_001762070.1| lipoyl synthase [Shewanella woodyi ATCC 51908]
 gi|238688648|sp|B1KDX3|LIPA_SHEWM RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|169813391|gb|ACA87975.1| lipoic acid synthetase [Shewanella woodyi ATCC 51908]
          Length = 321

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/184 (13%), Positives = 56/184 (30%), Gaps = 14/184 (7%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V    G  +     +    A+ + D  +  + +   +    R    DG   
Sbjct: 94  CTRRCPFCDV--AHGRPLKPDAQEPKKLAQTIKDMKLKYVVITSVD----RDDLRDGGAQ 147

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLD--VLMPYLHLPVQSGSDRIL 303
            F+D +  +  +   +++       R   D  +         V    L            
Sbjct: 148 HFADCIREIRLLNPEIKIETLVPDFRGRIDAALDILATEPPDVFNHNLETAPMHY----- 202

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           +             ++ + +   PD+   S  ++G  GET+++    +  +         
Sbjct: 203 RKARPGANYQWSLDLLKKFKERHPDVPTKSGLMMGL-GETNEEIAQVLKDLRAHNVEMLT 261

Query: 364 SFKY 367
             +Y
Sbjct: 262 LGQY 265


>gi|293376702|ref|ZP_06622925.1| radical SAM domain protein [Turicibacter sanguinis PC909]
 gi|325845184|ref|ZP_08168492.1| coproporphyrinogen dehydrogenase HemZ [Turicibacter sp. HGF1]
 gi|292644659|gb|EFF62746.1| radical SAM domain protein [Turicibacter sanguinis PC909]
 gi|325488780|gb|EGC91181.1| coproporphyrinogen dehydrogenase HemZ [Turicibacter sp. HGF1]
          Length = 492

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/251 (12%), Positives = 85/251 (33%), Gaps = 14/251 (5%)

Query: 126 VVVGPQTYYRLPELLERARFGKRVVD---TDYSVEDKFERLSIVDGGYNRKRGVTAFLTI 182
           +V G +      + ++     + +V     +  ++    +L ++   +  +  ++ ++ I
Sbjct: 113 LVHGMKKRGYSDQEIKEYMQAEYLVSDEKINLLLDVANHQLKVIPDLHTIQNEISLYIGI 172

Query: 183 QEGCDKFCTFCVVPYT----RGIEISRSLSQVVDEARKLIDNGV-CEITLLGQNVNAWRG 237
              C   C +C  P          I   L  +++E + +       ++ +          
Sbjct: 173 PF-CPTRCAYCTFPAYAQEPFKKWIEPFLEALLEEIKLVGAFIKERQLKITSIYFGGGTA 231

Query: 238 KGLDGE--KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPV 295
             L  E  +     +   ++    +  +      P  ++   +    + D+    + +  
Sbjct: 232 TSLTKEQFEKLLITVYEHVANASEVREITVEAGRPDTITPEKLSLLKEYDI--HRISINP 289

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
           QS +   L S+ R HT  +        +    D  I+ D IVG P E + +   T+  ++
Sbjct: 290 QSFNQATLDSIGRHHTVEDVIDKFKMAKEYDFD-NINMDLIVGLPDEGEKELAYTLSQIE 348

Query: 356 KIGYAQAFSFK 366
           ++         
Sbjct: 349 ELQPESLTVHM 359


>gi|256546119|ref|ZP_05473472.1| oxygen-independent coproporphyrinogen III oxidase 2
           (coproporphyrinogenase) (coprogen oxidase) [Anaerococcus
           vaginalis ATCC 51170]
 gi|256398236|gb|EEU11860.1| oxygen-independent coproporphyrinogen III oxidase 2
           (coproporphyrinogenase) (coprogen oxidase) [Anaerococcus
           vaginalis ATCC 51170]
          Length = 435

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 35/181 (19%), Positives = 72/181 (39%), Gaps = 10/181 (5%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C +C  P      +S ++ + +      +   + +I L  +    + G G      
Sbjct: 136 CPQRCRYCSYPTI----VSNTVEKNLYV--DFLLKEISQINLPKKLDTIYLGGGTPSN-L 188

Query: 246 TFSDLLYSLSEI-KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304
           +  DL   LS I +  +   +T    R+ +    K     +  +  + L  Q+ S  +L+
Sbjct: 189 SVKDLDRILSLINEKFIFNEFTLEAGREDTLDFEKLDLFKEKNVGRISLNPQTFSVNVLE 248

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
           ++NR      + +I D  + +   I ++ DFIVG  GE  + F    +++ K+       
Sbjct: 249 NINRAIDLENFIRIYDYAKKL--GIIVNMDFIVGLYGENRESFSKNFEILKKLEPDNITF 306

Query: 365 F 365
            
Sbjct: 307 H 307


>gi|218672732|ref|ZP_03522401.1| lipoyl synthase [Rhizobium etli GR56]
          Length = 266

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/194 (13%), Positives = 71/194 (36%), Gaps = 11/194 (5%)

Query: 174 RGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVN 233
           +    F+ + E C + C FC V    G   +  +++  + A+ + + G+  + +   +  
Sbjct: 2   KKHATFMIMGEICTRACAFCNV--ATGKPNALDMAEPENVAKAVREMGLSHVVITSVD-- 57

Query: 234 AWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHL 293
             R    DG    F  +++++        +   T         L +       +  +   
Sbjct: 58  --RDDLEDGGAEHFEKVIWAIRAASPATTIEILTPDFLKKPGALERVVASKPDVFNH--- 112

Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
            +++ +   L ++      +   +++ R++ + P +   S  +VG  GE  ++    MD 
Sbjct: 113 NMETVAGNYL-TVRPGARYFHSIRLLQRVKELDPTMFTKSGIMVGL-GEERNEVLQLMDD 170

Query: 354 VDKIGYAQAFSFKY 367
           +           +Y
Sbjct: 171 LRTADVDFLTIGQY 184


>gi|254285969|ref|ZP_04960930.1| conserved hypothetical protein [Vibrio cholerae AM-19226]
 gi|150423879|gb|EDN15819.1| conserved hypothetical protein [Vibrio cholerae AM-19226]
          Length = 316

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 50/121 (41%), Gaps = 12/121 (9%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +L L +Q+  D+ LK +NR H    Y +I  + R++   I + +  IVG PGE   +   
Sbjct: 145 WLELGLQTAHDQTLKRINRGHNFACYAEITAKARAL--GIKVCTHLIVGLPGEGRTENLT 202

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDAC 409
           T+  V K+G             G+  +          KA R   L    ++Q VS     
Sbjct: 203 TLQQVLKVGTDGIKLHGLHIVEGSTMA----------KAWRAGRLTVLDQDQYVSIACEM 252

Query: 410 V 410
           +
Sbjct: 253 I 253


>gi|281357645|ref|ZP_06244132.1| Radical SAM domain protein [Victivallis vadensis ATCC BAA-548]
 gi|281315902|gb|EFA99928.1| Radical SAM domain protein [Victivallis vadensis ATCC BAA-548]
          Length = 417

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 62/350 (17%), Positives = 119/350 (34%), Gaps = 57/350 (16%)

Query: 42  LRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDL 101
            R++  F+ +  E ++     DL+ + +C         +     R   L +    EG  +
Sbjct: 35  ERVKVRFYDENVEPIDFGGSCDLVGI-SC--------MLTCQTPRAFELADRFRSEGKTV 85

Query: 102 LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFE 161
           ++     +  AE       +   + V   +   R+  ++     G+     +Y  +    
Sbjct: 86  MMGGIAVMLHAE-----EAAEHADCVFLGEAEGRMETVISDFENGRLKKVYNYLGDFPDT 140

Query: 162 RLSIVDGGYNRKRGVTAFLTIQ--------EGCDKFCTFCVVPYTRG-IEISRSLSQVVD 212
           RL         KR +  +  IQ         GC   C  C  PY  G     R + +VV+
Sbjct: 141 RLIGTARRDILKRDLYNYRGIQMVDLVHASRGCRFNCFPCCTPYLGGRRFRPRPIDKVVE 200

Query: 213 EARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
           E   + +N +     +  N  A   +          +L  +++ +K         SHP  
Sbjct: 201 ELESIDNNRL----FIVDNSLAQDDEWEK-------ELFRAIAPLKKKW-----ISHPIK 244

Query: 273 MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAIS 332
             + ++K          Y+    Q+  D          T+   R  I R +     I + 
Sbjct: 245 DDEEILKL--AEKAGCWYV---YQAVFD----------TSDYIRDRIRRYKD--HGIGVE 287

Query: 333 SDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP-GSNMLEQ 381
              I+G   +T DD R  +D + +I    A     +P   +   +++ EQ
Sbjct: 288 GTIILGTDDQTLDDIRRLVDFLLEIDLDLAEFTVLTPFPHSSIAASLEEQ 337


>gi|138896561|ref|YP_001127014.1| lipoyl synthase [Geobacillus thermodenitrificans NG80-2]
 gi|196249264|ref|ZP_03147962.1| lipoic acid synthetase [Geobacillus sp. G11MC16]
 gi|166230418|sp|A4ISG5|LIPA_GEOTN RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|134268074|gb|ABO68269.1| Lipoic acid synthetase [Geobacillus thermodenitrificans NG80-2]
 gi|196211021|gb|EDY05782.1| lipoic acid synthetase [Geobacillus sp. G11MC16]
          Length = 298

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/214 (14%), Positives = 74/214 (34%), Gaps = 13/214 (6%)

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           ++V ++ +  +I +    R+     F+ +   C + C FC V      E+     +    
Sbjct: 37  HTVCEEAKCPNIHECWAVRR--TATFMILGSVCTRACRFCAVKTGLPTEL--DWQEPERV 92

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
           A  +    +  + +        R    DG    F++ + ++        +    S    +
Sbjct: 93  AESVRIMNLKHVVVTAV----ARDDLKDGGAAVFAETVRAIRRKNPFTTIEVLPSDMGGV 148

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
            + L         ++ +    V+  +      +  R T     + + R + ++PDI   S
Sbjct: 149 YENLKTLMDARPDILNHNIETVRRLTP----RVRARATYERSLEFLRRAKELQPDIPTKS 204

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
             ++G  GET ++    MD +           +Y
Sbjct: 205 SIMIGL-GETKEEIIEAMDDLRANHVDILTIGQY 237


>gi|313904102|ref|ZP_07837482.1| Radical SAM domain protein [Eubacterium cellulosolvens 6]
 gi|313471251|gb|EFR66573.1| Radical SAM domain protein [Eubacterium cellulosolvens 6]
          Length = 720

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 48/265 (18%), Positives = 85/265 (32%), Gaps = 47/265 (17%)

Query: 155 SVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDE 213
               K+  +   DGG      +   LT   GC   C FC +    G  + +RS   +++E
Sbjct: 281 PYTRKWHPVYDADGGIPALSEIRYSLTSNRGCYGECNFCALTMHEGRIVQARSHKSILEE 340

Query: 214 ARKLIDN----------GVCEITLLG------------QNVNAWRGKGLDGEKCTFSD-- 249
           A+++I+           G       G             N      K     K   SD  
Sbjct: 341 AKQMIEEPDFKGYIHDVGGPTAEFRGPACSKQLKKGACPNRRCLYPKPCPNLKVDHSDYL 400

Query: 250 -LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV-----LMPY-----LHLPVQSG 298
            LL  L  +  + ++   +    D          D D      L  Y     L +  ++ 
Sbjct: 401 SLLRKLRALPKVKKVFVRSGFRFDY------LMADKDKTFLRELCKYHVSGQLRVAPENI 454

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDF----IVGFPGETDDDFRATMDLV 354
           +D +L  M +  +   Y   ++  + +   + +        +   PG T  D  A  + +
Sbjct: 455 TDNVLSKMGKP-SVSVYNGFVEEFKKINEKLGLKQYIVPYLMSSHPGSTLKDAIALAEYI 513

Query: 355 DKIGYAQAFSFKYSPRLGTPGSNML 379
             +GY       + P  GT  + M 
Sbjct: 514 RDMGYMPEQVQDFYPTPGTVSTTMY 538


>gi|303232223|ref|ZP_07318922.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Atopobium vaginae PB189-T1-4]
 gi|302481633|gb|EFL44694.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Atopobium vaginae PB189-T1-4]
          Length = 443

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 43/233 (18%), Positives = 81/233 (34%), Gaps = 22/233 (9%)

Query: 186 CDKFCTFC---VVPYT-RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD 241
           C + C +C     PY     + +R L+ V  + ++L   G+                G  
Sbjct: 33  CSQKCGYCDFASWPYAANTNDRARYLAAVCTDMQQLASWGLLCDVQTA-------YIGGG 85

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMS--DCLIKAHGDLDVLMPYLHLPVQSGS 299
              C  S L   +S I  L      +      S  D L+         +  + L VQS  
Sbjct: 86  TPTCLGSKLPELISSIAELCSPVEFSCEANPDSTSDELLAQLAQSP--LTRISLGVQSCH 143

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
           +R L+++ R HTA +    +    +    + +S D +   P +T   +  ++ L  + G 
Sbjct: 144 ERELRALGRTHTARQALSRLRA--AAAQGLCVSCDLMCAIPYQTPASWYQSLTLCCEQGI 201

Query: 360 AQAFSFKYSPRLGTPGSNMLEQVDEN-----VKAERLLCLQKKLREQQVSFND 407
           +    +  +    T        V        V+A R+    + L+E   +  +
Sbjct: 202 SHISIYPLAIEPHTAFWKRYSSVHPAFNNDLVQAARMKAAARILQEAGFARYE 254


>gi|300690922|ref|YP_003751917.1| coproporphyrinogen dehydrogenase [Ralstonia solanacearum PSI07]
 gi|299077982|emb|CBJ50623.1| Coproporphyrinogen dehydrogenase [Ralstonia solanacearum PSI07]
          Length = 424

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/211 (15%), Positives = 72/211 (34%), Gaps = 23/211 (10%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C +C        E      + +   R+ ++  +  +     +     G    G   
Sbjct: 53  CVRKCPYCDFNSHAEPEPGIPEERFLAAIRQDLEAALPMVWGRRVHTIFIGG----GTPS 108

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY-------LHLPVQSG 298
             S   + L  +   +R+        +++        + +    Y       L + +QS 
Sbjct: 109 LLS--AHGLDTLLSDIRMLLPVDADAEITMEANPGTFEAERFRSYRASGVNRLSIGIQSF 166

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGET----DDDFRATMDLV 354
           +D  L+++ R H+A E R  ID  R+   +I +  D +   PG+T    + D  A +   
Sbjct: 167 NDAHLRALGRIHSAAEARAAIDLARAHFDNINL--DLMFALPGQTLAECEADVEAALSF- 223

Query: 355 DKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
                +    +  +    T  +     + ++
Sbjct: 224 ---DTSHVSLYHLTLEPNTYFAKHPPALPDD 251


>gi|291288905|ref|YP_003505721.1| Radical SAM domain protein [Denitrovibrio acetiphilus DSM 12809]
 gi|290886065|gb|ADD69765.1| Radical SAM domain protein [Denitrovibrio acetiphilus DSM 12809]
          Length = 343

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 40/205 (19%), Positives = 72/205 (35%), Gaps = 12/205 (5%)

Query: 174 RGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVN 233
           R +  F+T   GC   C +C      G+  S  +S    +  + +        L      
Sbjct: 4   RILPVFITFA-GCTSRCVYCNQHRITGVRPSNVISSARQQISECLSMDAKWTEL------ 56

Query: 234 AWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHL 293
           A+ G             LY L++  G+  LR++TS        L ++       +  + L
Sbjct: 57  AFYGGSFSCLPDGIRSELYKLAKETGINTLRFSTSPDCINQKILDESVR---NGVKTIEL 113

Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
            VQS  D +LK+  R + A E       +++      I    + G   E  + F  T+D 
Sbjct: 114 GVQSLDDTVLKANKRPYLASECEAAFAHVKTAVEHAGI--QLMTGLYKEDFNSFAKTVDR 171

Query: 354 VDKIGYAQAFSFKYSPRLGTPGSNM 378
              +    A  +       T  +++
Sbjct: 172 AVMMRADYARIYPTVVIEETELADL 196


>gi|262182977|ref|ZP_06042398.1| oxygen-independent coproporphyrinogen III oxidase [Corynebacterium
           aurimucosum ATCC 700975]
          Length = 310

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 50/237 (21%), Positives = 80/237 (33%), Gaps = 25/237 (10%)

Query: 186 CDKFCTFC----VVP-YTRGIEIS---RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG 237
           C   C +C      P    G   S    +L + ++ A   +D    E   +G    +  G
Sbjct: 13  CASRCGYCDFNTYTPGELGGDLTSDYLVALEKELEMAAVQVDREA-ETVFIGGGTPSLLG 71

Query: 238 KGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQS 297
               G       +L  + +  GL      T+     S       G LD     L L +QS
Sbjct: 72  AEGLGR------VLSKVRDTFGLAPGAEVTTESNPESTSPEYFAGLLDAGFTRLSLGMQS 125

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRP-DI-AISSDFIVGFPGETDDDFRATMDLVD 355
            S  +L  + R HT     +  D  R         ++ D I G P E D D   T++   
Sbjct: 126 ASPGVLAVLERAHTPG---RAFDAAREAIAAGFEHVNLDMIYGTPTEEDADVALTLERAL 182

Query: 356 KIGYAQAFSFKYSPRLGTPGSN-----MLEQVDENVKAERLLCLQKKLREQQVSFND 407
           + G     ++      GT  +      +L   DE+V A R   +   L  +   + +
Sbjct: 183 ETGVDHISAYSLIVEDGTRMARKVSKGLLPAPDEDVLARRYEMISSTLEAEGFEWYE 239


>gi|227114411|ref|ZP_03828067.1| lipoyl synthase [Pectobacterium carotovorum subsp. brasiliensis
           PBR1692]
          Length = 321

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/183 (16%), Positives = 67/183 (36%), Gaps = 12/183 (6%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V    G  ++   ++    A+ + D G+  + +   +    R    DG   
Sbjct: 94  CTRRCPFCDV--AHGRPLTPDANEPEKLAQTIHDMGLRYVVITSVD----RDDLRDGGAQ 147

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAH-GDLDVLMPYLHLPVQSGSDRILK 304
            F+D + ++      +R+       R   D  ++        +  +    V     R+ +
Sbjct: 148 HFADCISAIRRKNPSIRIETLVPDFRGRMDRALEILTATPPDVFNHNLENV----PRVYR 203

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
            +          ++++  ++  PDI   S  +VG  GET+ +    M  + + G      
Sbjct: 204 QVRPGANYEWSLKLLENFKNAHPDIPTKSGLMVGL-GETNAEIVEVMRDLRRHGVTMLTL 262

Query: 365 FKY 367
            +Y
Sbjct: 263 GQY 265


>gi|255280798|ref|ZP_05345353.1| oxygen-independent coproporphyrinogen III oxidase 2 [Bryantella
           formatexigens DSM 14469]
 gi|255268735|gb|EET61940.1| oxygen-independent coproporphyrinogen III oxidase 2 [Bryantella
           formatexigens DSM 14469]
          Length = 482

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 40/258 (15%), Positives = 84/258 (32%), Gaps = 27/258 (10%)

Query: 127 VVGPQTYYRLPELLERARFGKRVVDTDYSVEDK-FERLSIVDGGYNRKRGVTAFLTIQEG 185
           + G +       LLE+      + D          E+ ++     NR+R +   +  Q G
Sbjct: 107 LTGIRPTKIPMGLLEQGWKNTEIADYMRKTYYTSNEKTALAISIANRERAILKDIDYQNG 166

Query: 186 ---------CDKFCTFCVV---PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVN 233
                    C   C +C     P +        +   +D   + I+         G+ ++
Sbjct: 167 YSLYVGIPFCPSICLYCSFGSSPLSVWKNR---VDDYLDALCREIEQTAH--IWQGKTLD 221

Query: 234 AWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD------MSDCLIKAHGDLDVL 287
                G      +   +   L +++      +      +      ++   ++        
Sbjct: 222 TVYIGGGTPTTLSPEQMQRLLEKLEECFDFSHLKEFTVEAGRPDSITAEKLQVLKKHP-- 279

Query: 288 MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDF 347
           +  + +  Q+ +D  L+ + R HTA + ++     R +  D  I+ D IVG PGE   + 
Sbjct: 280 VTRISINPQTMNDGTLEVIGRGHTAAQTKEAFAMARQLGFD-NINMDLIVGLPGEGYPEV 338

Query: 348 RATMDLVDKIGYAQAFSF 365
             TM  V  +        
Sbjct: 339 EYTMQQVTALAPDSITVH 356


>gi|108762001|ref|YP_632393.1| lipoyl synthase [Myxococcus xanthus DK 1622]
 gi|108465881|gb|ABF91066.1| lipoic acid synthetase [Myxococcus xanthus DK 1622]
          Length = 309

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/193 (13%), Positives = 65/193 (33%), Gaps = 10/193 (5%)

Query: 175 GVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA 234
           G    + + E C + C FC V       +     + +  A+ + +  +  I +   N   
Sbjct: 63  GTATVMLMGEVCTRACRFCHVKVGAPPPL--DPMEPIHLAQAVKEMDLEYIVVTSVN--- 117

Query: 235 WRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP 294
            R    DG    F+  +  L        +       + +   L         ++ +    
Sbjct: 118 -RDDRPDGGASHFASAIRELRRESPRTIVEVLIPDFKGVEKDLTTVAEAKPHVVAHNVET 176

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           V+  +  +     + H +    ++++ +++    +   +  +VG  GETD +   T   +
Sbjct: 177 VERLTPTVRDRRAKYHQS---LRVLEYLKNRPEGLYTKTSVMVGL-GETDAELEQTFKDL 232

Query: 355 DKIGYAQAFSFKY 367
             +G       +Y
Sbjct: 233 RDVGVDVLTLGQY 245


>gi|1515308|emb|CAA66617.1| oxygen-independent coproporphyrinogen III dehyrogenase [Pseudomonas
           aeruginosa PAO1]
          Length = 460

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 80/223 (35%), Gaps = 19/223 (8%)

Query: 159 KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC----VVPYTRGIEISRS-LSQVVDE 213
            F++L  +         ++ ++ I   C   C +C    V+   RG   S   L+++V E
Sbjct: 37  PFDQLHALRDSRKAGHPLSLYVHIPF-CANICYYCACNKVITKDRG--RSAPYLARLVRE 93

Query: 214 ARK-----LIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
                        V ++   G          L          L  L +  G   +     
Sbjct: 94  IEIVSRHLSRAQVVEQLHFGGGTPTFLSPGQLRELMSQLRTHLNLLDDDSGDYGIEIDPR 153

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
                +  L++  G        + L VQ     + K++NR  T  E R I++  R+++  
Sbjct: 154 EADWSTMGLLRELG-----FNRVSLGVQDFDMEVQKAVNRMQTPEETRTIVEAARTLQYR 208

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
            +I+ D I G P +T D F  T+D V  +   +   F Y+   
Sbjct: 209 -SINLDLIYGLPKQTPDSFARTVDEVIALQPDRLSVFNYAHLP 250


>gi|71064900|ref|YP_263627.1| hypothetical protein Psyc_0324 [Psychrobacter arcticus 273-4]
 gi|71037885|gb|AAZ18193.1| conserved hypothetical protein [Psychrobacter arcticus 273-4]
          Length = 815

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 48/309 (15%), Positives = 95/309 (30%), Gaps = 47/309 (15%)

Query: 106 AGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSI 165
           A  + Q            ++V + P       E            + DY  +  + RL  
Sbjct: 378 ARALVQRHSSGAGNSHTSIDVWLNPPPIPLSTE------------EMDYVFDLPYARLPH 425

Query: 166 VDGGYNR---KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDNG 221
              G  R      +   + I  GC   CTFC +    G  I +RS   ++ E   + D  
Sbjct: 426 PSYGDARIPAYDMIKFSVNIMRGCFGGCTFCSITEHEGRIIQNRSEESILREVEAIRDTA 485

Query: 222 VCEITLL----GQNVNAWRGKGLD----------------------GEKCTFSDLLYSLS 255
                ++    G   N +R    D                       +    + L     
Sbjct: 486 PNFTGVISDLGGPTANMYRLNCKDETIEKNCRKPSCVYPDICENLITDHSNLTQLYRKAR 545

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRRH--T 311
           +IKG+ ++   +    D++    +   +L    +  YL +  +   + +L  M +     
Sbjct: 546 DIKGVKKILIASGLRYDLAIKDPEYVKELVSHHVGGYLKIAPEHSEENVLSKMMKPGMGN 605

Query: 312 AYEYRQIIDRI-RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370
             +++ + ++  +    +  +   FI   PG  D+D       +   GY       + P 
Sbjct: 606 YDKFKAMFEQYSQEAGKEQYLIPYFIAAHPGTKDEDMMNLALWLKGNGYRADQVQAFYPS 665

Query: 371 LGTPGSNML 379
                + M 
Sbjct: 666 PMATATTMY 674


>gi|324516172|gb|ADY46445.1| Lipoyl synthase [Ascaris suum]
          Length = 315

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/190 (15%), Positives = 60/190 (31%), Gaps = 23/190 (12%)

Query: 186 CDKFCTFCVVPYTRGIEISRSL----SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD 241
           C + C FC V   R     R       +    A  + + GV  +     +    R    D
Sbjct: 75  CTRGCRFCSVKTAR-----RPPPLDVDEPRKTAEAVAEWGVPYVVFTSVD----RDDIAD 125

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
           G     ++ +  + E      +                      V+   L +   +    
Sbjct: 126 GGASHIAETVRRVKEACPKTLVECLVPDFGG------SLESVETVVCSGLDVYAHNMETV 179

Query: 302 ILKSMNRRHTAYEYR---QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
              +   R    +Y    ++++  + VRPD+   +  ++G   E ++  + TM  + +IG
Sbjct: 180 RRLTPWVRDPRAKYEQSMKVLEHAKKVRPDVVTKTSLMLGLGEEDEEVIQ-TMKELREIG 238

Query: 359 YAQAFSFKYS 368
                  +Y 
Sbjct: 239 VDALTLGQYM 248


>gi|291524546|emb|CBK90133.1| radical SAM protein, TIGR01212 family [Eubacterium rectale DSM
           17629]
          Length = 302

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/196 (16%), Positives = 68/196 (34%), Gaps = 13/196 (6%)

Query: 189 FCTFCVV--PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLG--QNVNAWRGKGLDGEK 244
            C +C            + S+ + +  AR+ + +       +   Q         +D  +
Sbjct: 40  GCLYCSAGGSGDFAANRNLSIKEQLSAAREKVASKSSCEHFIAYFQAFTNTY-APIDYLR 98

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMP-YLHLPVQSGSDRIL 303
             F + +         V +    +     S  +     +L+ + P ++ L +Q+     L
Sbjct: 99  RIFYEAIE-----DPSVAVLSIGTRTDCFSAEIYDLLSELNSIKPVWIELGLQTIHQCTL 153

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
            +MN      ++  + D +R     I + +  I+G P ET      ++D V K G     
Sbjct: 154 DAMNTHTCVEDFIIVTDELRRR--GIKVIAHLILGLPHETRGMMLESVDFVAKSGIFGVK 211

Query: 364 SFKYSPRLGTPGSNML 379
                   GTP ++M 
Sbjct: 212 LQLLHVLKGTPLADMY 227


>gi|254810624|sp|B1WTI3|BIOB_CYAA5 RecName: Full=Biotin synthase
          Length = 382

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/200 (17%), Positives = 73/200 (36%), Gaps = 15/200 (7%)

Query: 186 CDKFCTFCVVPYTRGIEIS-----RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL 240
           C + C FC        E S     +S  +++ +A+     G     L+ Q          
Sbjct: 101 CSENCQFCSQSVHHQGENSPIYGLKSSEEILAQAKAAEVAGAKRFCLVSQGRGPKYNSPQ 160

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300
            GE   F  +L ++ +I     ++       +++    +A  +   +  Y H      S+
Sbjct: 161 SGE---FEKILETVRQITTETNIK-PCCALGEVTLEQAEALKEAG-VTRYNHNL--EASE 213

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
              +S+   H+  +  + +  ++     I   +  I+G  GET +D       + ++   
Sbjct: 214 NYYQSIVSTHSWGDRVETVKNLKKA--GIQACTGGIMGM-GETWEDRVDLAISLRELEVD 270

Query: 361 QAFSFKYSPRLGTPGSNMLE 380
                  +PR GTP  ++ +
Sbjct: 271 SVPINLLNPREGTPLGHLPK 290


>gi|254780676|ref|YP_003065089.1| lipoyl synthase [Candidatus Liberibacter asiaticus str. psy62]
 gi|254040353|gb|ACT57149.1| lipoyl synthase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 329

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/182 (15%), Positives = 64/182 (35%), Gaps = 11/182 (6%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + CTFC V    G        +  + +  +    +  + +   +    R    DG   
Sbjct: 96  CTRACTFCNV--ATGKPQPLDPQEPENISWAVRSMKLSHVVITSVD----RDDLDDGGAQ 149

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
            F++++ ++ E      +   T         L K       +  +    V   S+ ++  
Sbjct: 150 HFAEVISAIRESAPSTTIEVLTPDFLRKPHALEKVVSAKPDVFNHNLETV--ASNYLMVR 207

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
              R+  +   +++ R++ + P I   S  ++G  GET ++    MD +           
Sbjct: 208 PGARY--FHSLRLLQRVKELDPLIFTKSGIMLGL-GETRNEILQLMDDLRTADVDFLTMG 264

Query: 366 KY 367
           +Y
Sbjct: 265 QY 266


>gi|172039263|ref|YP_001805764.1| biotin synthetase [Cyanothece sp. ATCC 51142]
 gi|171700717|gb|ACB53698.1| biotin synthetase [Cyanothece sp. ATCC 51142]
          Length = 392

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/200 (17%), Positives = 73/200 (36%), Gaps = 15/200 (7%)

Query: 186 CDKFCTFCVVPYTRGIEIS-----RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL 240
           C + C FC        E S     +S  +++ +A+     G     L+ Q          
Sbjct: 111 CSENCQFCSQSVHHQGENSPIYGLKSSEEILAQAKAAEVAGAKRFCLVSQGRGPKYNSPQ 170

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300
            GE   F  +L ++ +I     ++       +++    +A  +   +  Y H      S+
Sbjct: 171 SGE---FEKILETVRQITTETNIK-PCCALGEVTLEQAEALKEAG-VTRYNHNL--EASE 223

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
              +S+   H+  +  + +  ++     I   +  I+G  GET +D       + ++   
Sbjct: 224 NYYQSIVSTHSWGDRVETVKNLKKA--GIQACTGGIMGM-GETWEDRVDLAISLRELEVD 280

Query: 361 QAFSFKYSPRLGTPGSNMLE 380
                  +PR GTP  ++ +
Sbjct: 281 SVPINLLNPREGTPLGHLPK 300


>gi|116072138|ref|ZP_01469406.1| lipoyl synthase [Synechococcus sp. BL107]
 gi|116065761|gb|EAU71519.1| lipoyl synthase [Synechococcus sp. BL107]
          Length = 289

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 70/220 (31%), Gaps = 11/220 (5%)

Query: 153 DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVD 212
           D ++    +  S  + G     G   FL +  GC + C +C +            ++ + 
Sbjct: 26  DLNLNTVCQEASCPNIGECFAGGTATFLIMGPGCTRACPYCDI-DFDKSVRELDPTEPLR 84

Query: 213 EARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
               +   G+  + +   N    R   LDG    F   +  + +   L  +         
Sbjct: 85  LGEAVARLGLSHVVITSVN----RDDLLDGGASQFVACIEQVKQRSPLTTIELLIPDLCG 140

Query: 273 MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAIS 332
             D L         ++ +    V     R+ K    +        ++ R+R   P +   
Sbjct: 141 NWDALATVMAAAPHVLNHNIETV----PRMYKRARPQGIYERSLDLLQRVRKGWPKVYTK 196

Query: 333 SDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY-SPRL 371
           S  +VG  GETDD+    +  +           +Y SP  
Sbjct: 197 SGLMVGL-GETDDEVIGVLKDLRNHQVDIVTIGQYLSPGP 235


>gi|332827807|gb|EGK00542.1| hypothetical protein HMPREF9455_03185 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 608

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 54/348 (15%), Positives = 112/348 (32%), Gaps = 66/348 (18%)

Query: 91  KNSRIKEGGDLLVVVAG---CVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147
           KN+  +      + +A    C+A     + L+++    +V           +++      
Sbjct: 210 KNALKQRPDGKDIYLASHEECLA-----DKLKQAGNFRIVEEQSNMMNASRIIQIYDEKA 264

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVT-------AFLTI------QEGCDKFCTFCV 194
            +++  Y    + E  +  D  Y R            AF  I        GC   C FC 
Sbjct: 265 VIINPPYPPMSEKEIDASFDLPYTRLPHPKYKGKTIPAFEMIKFSVNMHRGCFGGCAFCT 324

Query: 195 VPYTRGIEI-SRSLSQVVDEARKLIDNGVCEITLL---GQNVNAWRGKGLDGEKC----- 245
           +   +G  I SRS   +++E +++ +    +  L    G + N ++ KG D   C     
Sbjct: 325 ISAHQGKFIASRSKKSILNEVKQITEMPDFKGYLSDLGGPSANMYKMKGRDENICAKCKR 384

Query: 246 -----------------TFSDLLYSLSEIKGLVRLRYTTSHPRDM-----SDCLIKAHGD 283
                               D+  ++  +  + +    +    DM      D  +    +
Sbjct: 385 PSCIHPKICKNLDVDHSHLLDIYKAVDALPKIKKSFIGSGVRYDMLLHRNDDDRLNKISE 444

Query: 284 -------LDVLMPYLHLPVQSGSDRILKSMNRR-----HTAYEYRQIIDRIRSVRPDIAI 331
                  L+ +   L +  +  SD++L  M +      HT       I+    ++  +  
Sbjct: 445 KYTKELILNHVSGRLKVAPEHTSDKVLNCMRKPSFSQFHTFKRIFDKINSENGLKQQLIP 504

Query: 332 SSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
              FI   P  T+ D          +G+       ++P   T  + + 
Sbjct: 505 Y--FISSHPACTEIDMAELASETKPLGFKLEQVQDFTPSPMTVATEIY 550


>gi|332295976|ref|YP_004437899.1| Lipoyl synthase [Thermodesulfobium narugense DSM 14796]
 gi|332179079|gb|AEE14768.1| Lipoyl synthase [Thermodesulfobium narugense DSM 14796]
          Length = 289

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/244 (12%), Positives = 85/244 (34%), Gaps = 12/244 (4%)

Query: 126 VVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEG 185
           +V+  +  +   ++ ++     RV+  D  +    E     +           FL + + 
Sbjct: 1   MVLKKKPAWLHKKVCQKTENYTRVLLKDLELNTVCEEARCPNISECFSNRHATFLIMGDV 60

Query: 186 CDKFCTFCVVPYTRGIEISRSLS--QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
           C + C FC V   +   + + L   +    A+ +    +  + +        R    DG 
Sbjct: 61  CTRSCEFCNVKKAKDKNLLKPLDPYEPERVAQAVERLNLSHVVITSPT----RDDIFDGG 116

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
              F++ + ++  +   V +       +  +D +    G    +           +   L
Sbjct: 117 ALHFANTIKAIRNLNPNVTIEVLVPDFKGDTDSIKTVIGLNPEI-----FGHNLETVPRL 171

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
            ++ +  +      +++ ++ +  ++   +  ++G  GET D+ +   + + KI      
Sbjct: 172 YAIRKGASFERSLYVLESVKKLSQNVFTKTGIMLGL-GETMDELKEVFERLIKINCDFIS 230

Query: 364 SFKY 367
             +Y
Sbjct: 231 IGQY 234


>gi|288916977|ref|ZP_06411349.1| oxygen-independent coproporphyrinogen III oxidase [Frankia sp.
           EUN1f]
 gi|288351686|gb|EFC85891.1| oxygen-independent coproporphyrinogen III oxidase [Frankia sp.
           EUN1f]
          Length = 409

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 54/133 (40%), Gaps = 1/133 (0%)

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304
              + +L  L +  GL      T+     S  L             +   +QS    +L 
Sbjct: 105 SDLAKVLRILDDTFGLAGDVEVTTEANPESVDLEALEHLRASGFTRISFGMQSARPHVLA 164

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
           +++R+HT     +++   R    +  +S D I G PGE++ D+ A+++ V ++      +
Sbjct: 165 ALDRQHTPGRVAEVVGWARQAGFE-QLSLDLIYGAPGESEADWAASLEAVIELAPNHVSA 223

Query: 365 FKYSPRLGTPGSN 377
           +  +   GT  S 
Sbjct: 224 YSLTVEEGTKLSR 236


>gi|229521206|ref|ZP_04410626.1| hypothetical protein VIF_001730 [Vibrio cholerae TM 11079-80]
 gi|229341738|gb|EEO06740.1| hypothetical protein VIF_001730 [Vibrio cholerae TM 11079-80]
          Length = 316

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/124 (24%), Positives = 50/124 (40%), Gaps = 12/124 (9%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +L L +Q+  D+ LK +NR H    Y +I  + R++   I + +  IVG PGE   +   
Sbjct: 145 WLELGLQTAHDQTLKRINRGHDFACYAEITAKARAL--GIKVCTHLIVGLPGEGRTENLT 202

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDAC 409
           T+  V K+G             G+  +          KA R   L    +++ VS     
Sbjct: 203 TLQQVLKVGTDGIKLHGLHIVEGSTMA----------KAWRAGRLTVLDQDEYVSIACEM 252

Query: 410 VGQI 413
           +   
Sbjct: 253 IRST 256


>gi|153009395|ref|YP_001370610.1| lipoyl synthase [Ochrobactrum anthropi ATCC 49188]
 gi|166230429|sp|A6X0M7|LIPA_OCHA4 RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|151561283|gb|ABS14781.1| lipoic acid synthetase [Ochrobactrum anthropi ATCC 49188]
          Length = 321

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 40/243 (16%), Positives = 87/243 (35%), Gaps = 11/243 (4%)

Query: 125 NVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQE 184
           NVV+    + R+   + R     R +     +    E     + G   ++    F+ + E
Sbjct: 25  NVVLKKPEWIRVKAPVSRGYSETRDIVRSNKLVTVCEEAGCPNIGECWEKKHATFMIMGE 84

Query: 185 GCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK 244
            C + C FC V    GI  +   ++  + A+ +   G+  + +   +    R    DG  
Sbjct: 85  ICTRACAFCNVS--TGIPTALDPNEPENVAKAVKQMGLTHVVITSVD----RDDLADGGA 138

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304
             F++++ ++ E      +   T         L         +  +    +++   R LK
Sbjct: 139 QHFAEVIQAIREATPATTIEILTPDFLRKEGALEVVVRARPDVFNH---NLETVPSRYLK 195

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
            +      +   +++ R++ + P I   S  +VG  GE  ++    MD +          
Sbjct: 196 -VRPGARYFHSIRLLQRVKELDPTIFTKSGIMVGL-GEERNEILQLMDDLRSADVDFMTI 253

Query: 365 FKY 367
            +Y
Sbjct: 254 GQY 256


>gi|56750672|ref|YP_171373.1| hypothetical protein syc0663_c [Synechococcus elongatus PCC 6301]
 gi|81299686|ref|YP_399894.1| Elongator protein 3/MiaB/NifB [Synechococcus elongatus PCC 7942]
 gi|56685631|dbj|BAD78853.1| hypothetical protein [Synechococcus elongatus PCC 6301]
 gi|81168567|gb|ABB56907.1| Elongator protein 3/MiaB/NifB [Synechococcus elongatus PCC 7942]
          Length = 872

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 39/207 (18%), Positives = 67/207 (32%), Gaps = 23/207 (11%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGK 238
           + I+ GC + C FC               QVV+     I   G  E +LL          
Sbjct: 262 IEIRRGCTRGCRFCQPGMLTRPARDVEPEQVVEAIETGIRATGYNEFSLLS-----LSCS 316

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
                     ++   L      + L   +       D +    G        L    ++G
Sbjct: 317 DYLALPAVGIEIKNRLQ--DENITLSLPSQRVDRFDDNIANIIGGTRK--GGLTFAPEAG 372

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDD---FRATMDLV- 354
           + R+   +N+  T  E  + +        D  +   F++G PGETD D      T+  + 
Sbjct: 373 TQRLRDIINKGLTNEELLRGVKTAYEQGWD-RVKLYFMIGLPGETDADVLGIAETVRWLQ 431

Query: 355 -------DKIGYAQAFSFKYSPRLGTP 374
                   K+G+       ++P+  TP
Sbjct: 432 QECRGRKKKLGF-NLTISNFTPKPHTP 457


>gi|238060363|ref|ZP_04605072.1| lipoyl synthase [Micromonospora sp. ATCC 39149]
 gi|237882174|gb|EEP71002.1| lipoyl synthase [Micromonospora sp. ATCC 39149]
          Length = 335

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 77/220 (35%), Gaps = 26/220 (11%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC +   +  E      +    A  ++  G+   T+ G      R    DG   
Sbjct: 105 CTRRCDFCQIDTGKPAEF--DADEPRRVAESVVSMGLRYATITGV----ARDDLPDGGAW 158

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
            +++ +  +  ++    +         +   L +  G    ++ +    V     RI K 
Sbjct: 159 LYAETVRQIHALQPGCGVELLIPDFNAVPGQLAEVFGARPEVLAHNVETV----PRIFKR 214

Query: 306 MNRRHTAYEYRQIIDRIRSVRPD-IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
           +     A+ Y + +D IR  R D +   S+ I+G  GE   +    +  +   G      
Sbjct: 215 IRP---AFRYERSLDVIRQARADNLVTKSNLILGM-GEDRAEVSQALRDLHDAGCELITI 270

Query: 365 FKY---SPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQ 401
            +Y   SPR           V   VK E  + L+++  E 
Sbjct: 271 TQYLRPSPRHH--------PVTRWVKPEEFVELREEAEEI 302


>gi|229524363|ref|ZP_04413768.1| hypothetical protein VCA_001953 [Vibrio cholerae bv. albensis
           VL426]
 gi|229337944|gb|EEO02961.1| hypothetical protein VCA_001953 [Vibrio cholerae bv. albensis
           VL426]
          Length = 316

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/124 (24%), Positives = 50/124 (40%), Gaps = 12/124 (9%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +L L +Q+  D+ LK +NR H    Y +I  + R++   I + +  IVG PGE   +   
Sbjct: 145 WLELGLQTAHDQTLKRINRGHDFACYAEITAKARAL--GIKVCTHLIVGLPGEGRTENLT 202

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDAC 409
           T+  V ++G             G+  +          KA R   L    ++Q VS     
Sbjct: 203 TLQQVLRVGTDGIKLHGLHIVEGSTMA----------KAWRAGRLTVLDQDQYVSIACEM 252

Query: 410 VGQI 413
           +   
Sbjct: 253 IRST 256


>gi|225548082|ref|ZP_03769367.1| hypothetical protein RUMHYD_00061 [Blautia hydrogenotrophica DSM
           10507]
 gi|225040758|gb|EEG51004.1| hypothetical protein RUMHYD_00061 [Blautia hydrogenotrophica DSM
           10507]
          Length = 494

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 41/248 (16%), Positives = 80/248 (32%), Gaps = 40/248 (16%)

Query: 173 KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNV 232
           + G + ++ I   C   C +C          S    Q    A + +     EI  +   +
Sbjct: 171 ENGYSLYIGIPF-CPSICLYCSFS-------SYPYKQWEKRAGEYVQALKREIWAVAGMM 222

Query: 233 NAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD----------MSDCLIKAH 281
              +   +  G     +     L E+   +   +      +          ++   ++A 
Sbjct: 223 KNRKLDTVYMGGGTPTTLPPEYLDEVLTCIEEAFPCESLHEYTVEAGRPDSLTREKLEAV 282

Query: 282 GDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPG 341
                 +  + +  Q+ +D+ L+ + RRHT  E        R    D  I+ D IVG PG
Sbjct: 283 RRHP--VSRISVNPQTMNDKTLEVIGRRHTVRETIDAFKLARDCGFD-NINMDLIVGLPG 339

Query: 342 ETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK-AERLLCLQKKLRE 400
           E  ++   T++ + K+                            VK A RL   +++ +E
Sbjct: 340 EGKEEVAHTLEEIQKLSPDSLTVH-----------------SLAVKRAARLNMFREQYQE 382

Query: 401 QQVSFNDA 408
                N  
Sbjct: 383 MTFENNQE 390


>gi|38234293|ref|NP_940060.1| coproporphyrinogen III oxidase [Corynebacterium diphtheriae NCTC
           13129]
 gi|38200556|emb|CAE50251.1| Putative oxygen-independent coproporphyrinogen III oxidase
           [Corynebacterium diphtheriae]
          Length = 377

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 46/239 (19%), Positives = 79/239 (33%), Gaps = 27/239 (11%)

Query: 186 CDKFCTFC----VVPYTRGIEISRS-----LSQVVDEARKLIDNGVCEITLLGQNVNAWR 236
           C   C +C      P   G   S       L + ++ A             +G       
Sbjct: 14  CSSRCGYCDFNTYTPGELGGTASPESYLDALEKELELAAASGTTRPATTVFIGG--GTPS 71

Query: 237 GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP--RDMSDCLIKAHGDLDVLMPYLHLP 294
             G  G     S +  ++    G      +       +    L+ A          + L 
Sbjct: 72  MLGASGLTRVLSAVRNTIGIAPGAEVTTESNPETTSPEFFSELLDA------GYNRISLG 125

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI-AISSDFIVGFPGETDDDFRATMDL 353
           +QS S  +L+ + R+HT    R     + ++      ++ D I G P ETDDD R T++ 
Sbjct: 126 MQSASSSVLRVLERKHT--PGRAFDAALEAMNAGFLHVNLDMIYGTPTETDDDVRLTLER 183

Query: 354 VDKIGYAQAFSFKYSPRLGTPGSN--MLEQVD---ENVKAERLLCLQKKLREQQVSFND 407
               G     ++      GT  +      Q+    E+V A+R   +   LR Q   + +
Sbjct: 184 ALDTGVDHISAYSLIVEDGTAMARKVHKGQLPPPNEDVYADRYGLIDTALRAQGFDWYE 242


>gi|293608148|ref|ZP_06690451.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292828721|gb|EFF87083.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 328

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/207 (15%), Positives = 66/207 (31%), Gaps = 10/207 (4%)

Query: 161 ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN 220
           E  +  +       G   F+ + + C + C FC V    G        +    A  + + 
Sbjct: 66  EEAACPNLPECFGGGTATFMIMGDICTRRCPFCDV--AHGRPKPLDEDEPKHLAETVKNL 123

Query: 221 GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKA 280
            +  + +   +    R    DG    F   +  + +      +        D    L  A
Sbjct: 124 NLKYVVITSVD----RDDLHDGGAAHFVKCIEEIRKRCPETLIEILVP---DFRGRLETA 176

Query: 281 HGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFP 340
              L +  P +         R+ K+M          +++ R ++  PDI   S  +VG  
Sbjct: 177 LSTLSLSPPDVFNHNIETVPRLYKAMRPGSDYQHSLELLKRFKAYCPDIKTKSGLMVGL- 235

Query: 341 GETDDDFRATMDLVDKIGYAQAFSFKY 367
           GE + +  A ++ +           +Y
Sbjct: 236 GEIEAEVLALLNDLKDYQVDLVTIGQY 262


>gi|238796207|ref|ZP_04639717.1| hypothetical protein ymoll0001_34650 [Yersinia mollaretii ATCC
           43969]
 gi|238719900|gb|EEQ11706.1| hypothetical protein ymoll0001_34650 [Yersinia mollaretii ATCC
           43969]
          Length = 300

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 2/88 (2%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +L L +Q+ +D+ LK +NR H    Y+Q + R R+    + +    IVG PGE       
Sbjct: 141 WLELGLQTANDKTLKRINRGHDFACYQQTVRRARAR--GLKVCCHLIVGLPGEDRAQGME 198

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
           T++ V   G             G+  + 
Sbjct: 199 TLEKVVATGVDGLKLHPLHIVEGSTMAK 226


>gi|256827052|ref|YP_003151011.1| Fe-S oxidoreductase [Cryptobacterium curtum DSM 15641]
 gi|256583195|gb|ACU94329.1| Fe-S oxidoreductase [Cryptobacterium curtum DSM 15641]
          Length = 626

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 49/312 (15%), Positives = 99/312 (31%), Gaps = 46/312 (14%)

Query: 155 SVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVV-DE 213
           S   +   +   D  ++R       + I  GC + C FC           RS   +V   
Sbjct: 248 SPAWEPCIVPFADLVHDRLN-----VEILRGCTRGCRFCQAGMMYRPVRERSADNIVSST 302

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
              L   G  E++L   +            +   + L  +LS     +R+   +      
Sbjct: 303 LEGLAATGYDEVSLTSLSTT-----DHSQIREILTRLNSALSGTG--IRVSIPSQRLDAF 355

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR-QIIDRIRSVRPDIAIS 332
              + +           L    ++G+ R+   +N+  T  +    +    ++      + 
Sbjct: 356 GVDMAQMVAGEKR--GGLTFAPEAGTQRLRDVINKNVTEDDVISSLTAAFKAGWRRCKLY 413

Query: 333 SDFIVGFPGETDDDFRATMDLVD--------KIGYAQAFSFKYS-------PRLGTPGSN 377
             F++G P ETDDD +   DLV         ++  A+    + S       P+  TP   
Sbjct: 414 --FMLGLPTETDDDVKGIADLVQHAFEAVRAEVPPAERGRIRLSVSCALFVPKAQTP-FQ 470

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFN-----DACV-------GQIIEVLIEKHGKEK 425
              Q+       R+  L+   + + +  +      + V       G+    LIE   +  
Sbjct: 471 WDGQIAPEEALRRVRLLRDSAKYKAIDVHWHDPATSFVEAVMSRGGRECADLIEGAYRRG 530

Query: 426 GKLVGRSPWLQS 437
            +    +   + 
Sbjct: 531 ARFDAWTEHFKP 542


>gi|332998502|gb|EGK18100.1| oxygen-independent coproporphyrinogen III oxidase [Shigella
           flexneri K-272]
 gi|333013997|gb|EGK33358.1| oxygen-independent coproporphyrinogen III oxidase [Shigella
           flexneri K-227]
          Length = 457

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 44/269 (16%), Positives = 91/269 (33%), Gaps = 30/269 (11%)

Query: 157 EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS-------LSQ 209
           ED  E+  +       +R ++ ++ I   C K C FC        +  ++         +
Sbjct: 34  EDFGEQAFLQAVARYPERPLSLYVHIPF-CHKLCYFCGCNKIVTRQQHKADQYLDALEQE 92

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE-----IKGLVRLR 264
           +V  A       V ++   G       G      K   S L+  L E         + + 
Sbjct: 93  IVHRAPLFAGRHVSQLHWGG-------GTPTYLNKAQISRLMKLLRENFHFNTDAEISIE 145

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
                PR++   ++            L + VQ  +  + + +NR         +++  R 
Sbjct: 146 V---DPREIELDVLDHLRAEG--FNRLSMGVQDFNKEVQRLVNREQDEEFIFALLNHARE 200

Query: 325 VRPDIAISS-DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQV 382
           +      ++ D I G P +T + F  T+  V ++   +   F Y+       +   ++  
Sbjct: 201 I--GFTSTNIDLIYGLPKQTPESFAFTLKRVAELNPDRLSVFNYAHLPTIFAAQRKIKDA 258

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVG 411
           D     ++L  LQ+ +     S     +G
Sbjct: 259 DLPSPQQKLDILQETIAFLTQSGYQ-FIG 286


>gi|311896015|dbj|BAJ28423.1| hypothetical protein KSE_26110 [Kitasatospora setae KM-6054]
          Length = 642

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 58/346 (16%), Positives = 111/346 (32%), Gaps = 61/346 (17%)

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
             V+D D     K   + + +  + R       + I  GC + C FC           RS
Sbjct: 240 HTVMDLDEWPYPKQPLVPLAETVHERMS-----VEIFRGCTRGCRFCQAGMITRPVRERS 294

Query: 207 LSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE--IKGLVRL 263
           ++ + +   K +   G  E+ LL  +           +    +D+   L++   +  V L
Sbjct: 295 ITGIGEMVEKGLKATGFEEVGLLSLSS---------ADHSEIADITKGLADRYAEDKVGL 345

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
              ++     +  L             L    + GS+RI K +N+  +      +I+ + 
Sbjct: 346 SLPSTRVDAFNIDLANELSRNGR-RSGLTFAPEGGSERIRKVINKMVSEE---DLINTVA 401

Query: 324 SVRPDIA--ISSDFIVGFPGETDDDFRATMDLVD-------------KIGYAQAFSFKYS 368
           +   +    +   F+ G P ETD+D      +                +         + 
Sbjct: 402 AAYGNGWRQVKLYFMCGLPTETDEDVLQIGTMAKNVIAKGREVTGTNDVRCT-VSIGGFV 460

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLR---------------------EQQVSFND 407
           P+  TP      Q+      ERL  L+  +R                     E  +S  D
Sbjct: 461 PKPHTP-FQWAPQLSAEATDERLTKLRDSIRGDRKFGKNIGFRYHDGKPGIIEGLLSRGD 519

Query: 408 ACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKV 453
             +G +I  + E  G+  G     S      + +++    G  + V
Sbjct: 520 RRIGAVIRAVYEDGGRFDGWREHFS--YDRWIASAEKGLAGTGVDV 563


>gi|257092338|ref|YP_003165979.1| lipoyl synthase [Candidatus Accumulibacter phosphatis clade IIA
           str. UW-1]
 gi|257044862|gb|ACV34050.1| lipoic acid synthetase [Candidatus Accumulibacter phosphatis clade
           IIA str. UW-1]
          Length = 330

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 45/250 (18%), Positives = 88/250 (35%), Gaps = 19/250 (7%)

Query: 126 VVVGPQTYYRLPELL------ERARFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTA 178
           + + PQ   R P+ +      E  RFG+ R +  +  +    E  +  + G    RG   
Sbjct: 36  IKIVPQAAQRKPDWIRVKAGNEAGRFGEIRKLLREQKLHTVCEEAACPNIGECFGRGTAT 95

Query: 179 FLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK 238
           F+ + + C + C FC V    G  +   + + V  A  +    +  + +   +    R  
Sbjct: 96  FMILGDICTRRCPFCDV--GHGKPLPPDVDEPVHLADSVARLNLRYVVITSVD----RDD 149

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHG-DLDVLMPYLHLPVQS 297
             DG    F D++ ++        +       R   D  ++  G  L  ++ +    V  
Sbjct: 150 LRDGGAQHFVDVIRAVRARSPATTIETLVPDFRGRMDIAVEVLGQSLPDILNHNLETV-- 207

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
              R+ +              +   ++  P +   S  +VG  GETDD+  A +  +   
Sbjct: 208 --PRLYRQARPGADYAHSLAFMQAFKARYPQVPTKSGLMVGL-GETDDEILAVLRDLRAN 264

Query: 358 GYAQAFSFKY 367
           G       +Y
Sbjct: 265 GVEMLTIGQY 274


>gi|261364695|ref|ZP_05977578.1| putative oxygen independent coproporphyrinogen III oxidase
           [Neisseria mucosa ATCC 25996]
 gi|288566982|gb|EFC88542.1| putative oxygen independent coproporphyrinogen III oxidase
           [Neisseria mucosa ATCC 25996]
          Length = 606

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/202 (15%), Positives = 71/202 (35%), Gaps = 14/202 (6%)

Query: 186 CDKFCTFC-VVPYTRGIEIS-----RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
           C   C FC           S     + + ++  EA     NG       G       G  
Sbjct: 62  CANHCVFCGFYRNAWKESYSSVYTDKIIEEMAAEAEIRQGNGKIRAVYFG------GGTP 115

Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
              +    + L+ +  +   +      T   R     + KA   ++     + + VQ+  
Sbjct: 116 TALQTPDLARLIRACYQYLPIADDCEFTIEGRMSHFDIEKAQACIEAGANRISIGVQTFD 175

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
             I + + R+H   E    ++++  +  +  I  D + G P +TD  ++  ++    +  
Sbjct: 176 TAIRRRLGRKHGGDEAFAYLEKLCEI--NAVIVVDLMFGLPNQTDAVWQNDLERATALPL 233

Query: 360 AQAFSFKYSPRLGTPGSNMLEQ 381
           +   ++ ++     P + M+E+
Sbjct: 234 SGLDTYAFNLYPMLPINRMVEK 255


>gi|157691712|ref|YP_001486174.1| coproporphyrinogen III oxidase [Bacillus pumilus SAFR-032]
 gi|157680470|gb|ABV61614.1| coproporphyrinogen oxidase [Bacillus pumilus SAFR-032]
          Length = 499

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 35/228 (15%), Positives = 82/228 (35%), Gaps = 19/228 (8%)

Query: 152 TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-------- 203
            D   E    +L  +   Y+ ++ V+ ++ I   C   C +C  P               
Sbjct: 148 IDLMQEIVDRQLQAIPDLYDLQQEVSIYIGIPF-CPTKCAYCTFPAYAIKGQAGRVGTFL 206

Query: 204 ---SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
                 + ++ D  ++     V  +   G    +   + +D     + ++  S  ++K +
Sbjct: 207 FGLHYEMQKIGDWLKEHRIK-VTTVYFGGGTPTSITAEEMDL---LYEEMYRSFPDVKHI 262

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
             +      P  +S   ++      +    + +  QS  +  LK++ R H+  E  +   
Sbjct: 263 REVTVEAGRPDTISPDKLEVLNRYHI--DRISINPQSYENETLKAIGRHHSVEETIEKYH 320

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
             R    +  I+ D I+G PGE   +F+ +++  +++          S
Sbjct: 321 LSREYGMN-NINMDLIIGLPGEGLKEFQHSLNKTEELKPESLTVHTLS 367


>gi|118589899|ref|ZP_01547303.1| lipoyl synthase [Stappia aggregata IAM 12614]
 gi|118437396|gb|EAV44033.1| lipoyl synthase [Stappia aggregata IAM 12614]
          Length = 324

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/194 (12%), Positives = 68/194 (35%), Gaps = 11/194 (5%)

Query: 174 RGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVN 233
           +   +F+ + + C + C FC V       +     +    A  +   G+  + +   +  
Sbjct: 79  KKHASFMILGDTCTRACAFCNVRTGMPGPV--DPKEAQGVADAVAAMGLEHVVITSVD-- 134

Query: 234 AWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHL 293
             R    DG    F+D++ ++ +      +   T         L         +  +   
Sbjct: 135 --RDDLDDGGAQHFADVIAAIRKTAPSTTIEVLTPDFLRKDGALEIVVAAKPDVFNH--- 189

Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
            +++   + L ++      +   +++ +++ + P++   S  +VG  GE  ++    MD 
Sbjct: 190 NLETVPSKYL-TVRPGARYFHSIRLLQKVKELDPEMFTKSGIMVGL-GEVRNEVLQLMDD 247

Query: 354 VDKIGYAQAFSFKY 367
           +           +Y
Sbjct: 248 LRAADVDFLTVGQY 261


>gi|317499475|ref|ZP_07957741.1| HemN C-terminal protein [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316893249|gb|EFV15465.1| HemN C-terminal protein [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 382

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 70/220 (31%), Gaps = 11/220 (5%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEA----RKLIDNGVCEITLLGQNVNAWRGKGLD 241
           C   C +C     R  E       +         +LI  G          V    G    
Sbjct: 15  CKSKCRYCDFCSFRAEE-----ETIHAYLGKLKEELIFWGKKLAARDVVTVFIGGGTPSY 69

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
             +     +  ++ E   +      T      +  L K     +  +  +   +QS    
Sbjct: 70  LRREDIQMICETIFEHFHICEDAEITIEANPGTVDLKKLCTYRENGINRISFGLQSTVKE 129

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
            L+ + R HT  E+ Q  D  R     + I+ D +   P +T   +   +  + K+    
Sbjct: 130 ELEYLGRIHTYEEFLQSFDWARQA-GFLNINVDLMSAVPKQTLTSYEENLRKIAKLSPEH 188

Query: 362 AFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQ 401
             ++      GTP      +++E + +E    L  ++ E+
Sbjct: 189 ISAYSLIIEEGTPFYE-DNKLEELLPSEEDEVLMYRMTEK 227


>gi|283131228|dbj|BAI63279.1| hypothetical protein [Streptomyces sp. SNA15896]
          Length = 478

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 39/258 (15%), Positives = 84/258 (32%), Gaps = 36/258 (13%)

Query: 162 RLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC--VVPYTRG----IEISRSLSQVVDEAR 215
           R  I       +   TA + +   C   C FC        G     + S  +++VV+   
Sbjct: 159 RFPIFVDPRTDEIRRTAHVMVSNACPYQCNFCSETAKLAGGLKKFRQTSAGVNRVVEYVG 218

Query: 216 KLIDNGV--CEITLLGQ-----NVNAWRGKGLDGEKCTFSDLLYSL----SEIKGLVRLR 264
              +       +   G      +      +  +      ++    L    ++++ L RL 
Sbjct: 219 YGAEALFFDDSVFWSGTYRDVVDFCEELCRIRETPAGKLAEHHRRLLPTAADVERLGRLE 278

Query: 265 YTTSHPRDMSDCLIKAHGDLDVL-------MPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
           +      D+   L         L         Y+++ ++S SD+++  +++     E   
Sbjct: 279 WGAQLTVDVLVALHSLEESRRTLEIMRAAGCSYVYIGIESMSDQVMDKIHKNLRRVEGHS 338

Query: 318 IIDRIRSVRP-----DIAISSDFIVGFPGETDDDFRATMDLV------DKIGYAQAFSFK 366
             +++R+         + + +  + G  GET      T+  V        I  A      
Sbjct: 339 WAEKVRAAVSLVKSTGLRVGTSVLFGLEGETRASIDETIAGVSNLIADKLIDLASPNILT 398

Query: 367 YSPR-LGTPGSNMLEQVD 383
           Y P    T    M++++D
Sbjct: 399 YHPATPITRIHGMVDKLD 416


>gi|325982911|ref|YP_004295313.1| lipoic acid synthetase [Nitrosomonas sp. AL212]
 gi|325532430|gb|ADZ27151.1| lipoic acid synthetase [Nitrosomonas sp. AL212]
          Length = 314

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/218 (14%), Positives = 69/218 (31%), Gaps = 16/218 (7%)

Query: 153 DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS--QV 210
           ++ +    E  S  + G    +G   F+ + + C + C FC V + R           + 
Sbjct: 54  EHKLHTVCEEASCPNIGECFGKGTATFMILGDLCTRRCPFCDVAHGRPK----PPDANEP 109

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270
           +  A+ +    +  + +   +    R    DG    F D +  +       ++       
Sbjct: 110 LHLAQSIAAMRLKYVVITSVD----RDDLRDGGAQHFVDCIREIRVHSPTTKIETLVPDF 165

Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL-KSMNRRHTAYEYRQIIDRIRSVRPDI 329
           R   +  ++         P   L     +   L K            +++   ++  P I
Sbjct: 166 RGRLEIALEKLSA----CPPDVLNHNLETVPRLYKQCRPGADYNNSLKLLKDFKNNFPYI 221

Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
              S  ++G  GETDD+    +  +           +Y
Sbjct: 222 PTKSGLMLGL-GETDDEIMEVLHDLRSHNVEMLTIGQY 258


>gi|167624448|ref|YP_001674742.1| radical SAM domain-containing protein [Shewanella halifaxensis
           HAW-EB4]
 gi|167354470|gb|ABZ77083.1| Radical SAM domain protein [Shewanella halifaxensis HAW-EB4]
          Length = 644

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 37/193 (19%), Positives = 67/193 (34%), Gaps = 15/193 (7%)

Query: 180 LTIQEGCDKF-CTFCVVPYTR-GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG 237
           LTI  GC    C+FC V     G   +     +VD   +LI+         G+    +  
Sbjct: 367 LTIAHGCYWRKCSFCDVSLDYIGRFDATEADVLVDRIEQLIEE-------TGE--TGFHF 417

Query: 238 KGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQS 297
                       L   L E K ++         R  S    +   +   +       ++ 
Sbjct: 418 VDEALPPKLLFALAKRLIERKVVISWWGNIRFERTFSQARCQLLAESGCIAVSG--GLEV 475

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
            SDR+LK M +  +     Q+          I + +  + GFP +T+ +   ++++V ++
Sbjct: 476 ASDRLLKLMKKGVSVERVAQVTKAFSDA--GILVHAYLMYGFPTQTEQETVDSLEMVRQM 533

Query: 358 GYAQAFSFKYSPR 370
                F   Y  R
Sbjct: 534 MQQGCFQSAYWHR 546


>gi|241202758|ref|YP_002973854.1| coproporphyrinogen III oxidase [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240856648|gb|ACS54315.1| oxygen-independent coproporphyrinogen III oxidase [Rhizobium
           leguminosarum bv. trifolii WSM1325]
          Length = 400

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/209 (14%), Positives = 69/209 (33%), Gaps = 30/209 (14%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQ-------VVDEARKLIDNGVCEITLLGQNVNAWRGK 238
           C   C +C           + + Q       + + A     +G   +T +          
Sbjct: 33  CAAKCPYCD---FNSHVRHQPVDQERFTSAFLTEMAAVRAMSGPKTVTSI---------- 79

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY-------L 291
            L G   +      ++S I   +   +      +++     +  + +    Y       +
Sbjct: 80  FLGGGTPSLMK-PEAVSAILDGIARHWHVPDGIEITMEANPSSVEAERFRGYRAAGVNRV 138

Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351
            L VQ+ +DR LK + R H   +  + I   R + P ++   D I   P +T +++   +
Sbjct: 139 SLGVQALNDRDLKFLGRLHDVADALKAIRLARDIFPRMSF--DLIYARPDQTVEEWEKEL 196

Query: 352 DLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
                        ++ +   GTP   + +
Sbjct: 197 KEAISYAVDHLSLYQLTIEEGTPFYGLHK 225


>gi|218778961|ref|YP_002430279.1| oxygen-independent coproporphyrinogen III oxidase
           [Desulfatibacillum alkenivorans AK-01]
 gi|218760345|gb|ACL02811.1| oxygen-independent coproporphyrinogen III oxidase
           [Desulfatibacillum alkenivorans AK-01]
          Length = 377

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 37/192 (19%), Positives = 64/192 (33%), Gaps = 11/192 (5%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQ-VVDEARKLIDNGVCEITLLGQNVNAWRGKGLD--G 242
           C K C +C          S +    +    + L           G     + G G     
Sbjct: 11  CRKKCRYC-------DFYSVTDDSAIPAYIKALKREMQIREWDAGPFDTVFFGGGTPSVL 63

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
                +++L   S I G+      T      +             +  + L VQS  D+ 
Sbjct: 64  PPGRVAEILERASLIFGIAPDAEVTLEANPGTVSQNDLEAFQQAGVNRISLGVQSLDDQT 123

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           L+ + R H+A+E R  +D       D ++  D I G PG+T + +   ++ V   G    
Sbjct: 124 LQFLGRIHSAFEARLALDWAMEAGFD-SVGCDLIYGVPGQTRESWTKDLEDVLAYGPDHL 182

Query: 363 FSFKYSPRLGTP 374
             +  +    TP
Sbjct: 183 SCYILTIEESTP 194


>gi|93005186|ref|YP_579623.1| hypothetical protein Pcryo_0355 [Psychrobacter cryohalolentis K5]
 gi|92392864|gb|ABE74139.1| Radical SAM [Psychrobacter cryohalolentis K5]
          Length = 812

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 48/309 (15%), Positives = 95/309 (30%), Gaps = 47/309 (15%)

Query: 106 AGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSI 165
           A  + Q            ++V + P       E            + DY  +  + RL  
Sbjct: 375 ARALVQRHSSGAGNSHTSIDVWLNPPPIPLSTE------------EMDYVFDLPYARLPH 422

Query: 166 VDGGYNR---KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDNG 221
              G  R      +   + I  GC   CTFC +    G  I +RS   ++ E   + D  
Sbjct: 423 PSYGDARIPAYDMIKFSVNIMRGCFGGCTFCSITEHEGRIIQNRSEESILREVEAIRDTA 482

Query: 222 VCEITLL----GQNVNAWRGKGLD----------------------GEKCTFSDLLYSLS 255
                ++    G   N +R    D                       +    + L     
Sbjct: 483 PNFTGVISDLGGPTANMYRLNCKDETIEKNCRKPSCVYPDICENLITDHSNLTQLYRKAR 542

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRRH--T 311
           +IKG+ ++   +    D++    +   +L    +  YL +  +   + +L  M +     
Sbjct: 543 DIKGVKKILIASGLRYDLAIKDPEYVKELVSHHVGGYLKIAPEHSEENVLSKMMKPGMGN 602

Query: 312 AYEYRQIIDRI-RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370
             +++ + ++  +    +  +   FI   PG  D+D       +   GY       + P 
Sbjct: 603 YDKFKAMFEQYSQEAGKEQYLIPYFIAAHPGTKDEDMMNLALWLKGNGYRADQVQAFYPS 662

Query: 371 LGTPGSNML 379
                + M 
Sbjct: 663 PMATATTMY 671


>gi|332997585|gb|EGK17200.1| oxygen-independent coproporphyrinogen III oxidase [Shigella
           flexneri VA-6]
          Length = 457

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 44/269 (16%), Positives = 91/269 (33%), Gaps = 30/269 (11%)

Query: 157 EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS-------LSQ 209
           ED  E+  +       +R ++ ++ I   C K C FC        +  ++         +
Sbjct: 34  EDFGEQAFLQAVARYPERPLSLYVHIPF-CHKLCYFCGCNKIVTRQQHKADQYLDALEQE 92

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE-----IKGLVRLR 264
           +V  A       V ++   G       G      K   S L+  L E         + + 
Sbjct: 93  IVHRAPLFAGRHVSQLHWGG-------GTPTYLNKAQISRLMKLLRENFHFNTDAEISIE 145

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
                PR++   ++            L + VQ  +  + + +NR         +++  R 
Sbjct: 146 V---DPREIELDVLDHLRAEG--FNRLSMGVQDFNKEVQRLVNREQDEEFIFALLNHARE 200

Query: 325 VRPDIAISS-DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQV 382
           +      ++ D I G P +T + F  T+  V ++   +   F Y+       +   ++  
Sbjct: 201 I--GFTSTNIDLIYGLPKQTPESFAFTLKRVAELNPDRLSVFNYAHLPTIFAAQRKIKDA 258

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVG 411
           D     ++L  LQ+ +     S     +G
Sbjct: 259 DLPSPQQKLDILQETIAFLTQSGYQ-FIG 286


>gi|322835072|ref|YP_004215099.1| oxygen-independent coproporphyrinogen III oxidase [Rahnella sp.
           Y9602]
 gi|321170273|gb|ADW75972.1| oxygen-independent coproporphyrinogen III oxidase [Rahnella sp.
           Y9602]
          Length = 457

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 43/234 (18%), Positives = 81/234 (34%), Gaps = 17/234 (7%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C K C FC        +  +   + ++   K I +                 +   G   
Sbjct: 62  CHKLCYFCGCNKLVTRQQHK-AEEYLNVLEKEISHRAPLFK------GRQVSQLHWGGGT 114

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL-------MPYLHLPVQSG 298
                   +S + GL+R  +      +MS  +     +LDVL          L + VQ  
Sbjct: 115 PTYLDKAQISRLMGLLRAHFDILPDAEMSLEVDPREIELDVLDHLRSEGFNRLSMGVQDF 174

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           +  +   +NR         +I R R++  + + + D I G P +T + F  T+  V ++ 
Sbjct: 175 NKEVQLLVNREQDEDFIFALIARARALGFN-STNIDLIYGLPKQTAESFAYTLQRVAELN 233

Query: 359 YAQAFSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVG 411
             +   F Y+       +   ++  D     E+L  LQ+ +      F    +G
Sbjct: 234 PDRLSVFNYAHMPKLFAAQRKIKDADLPGAEEKLKILQETIASLT-GFGYRFIG 286


>gi|309389485|gb|ADO77365.1| Radical SAM domain protein [Halanaerobium praevalens DSM 2228]
          Length = 623

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 54/341 (15%), Positives = 112/341 (32%), Gaps = 55/341 (16%)

Query: 44  MEDMFFSQGYER-VNSMDDADLIVL-------NT--------CHIREKAAEKVYSFLGRI 87
           + +M    G E   +  +++D +++       N+             +A   +   L   
Sbjct: 120 ILNMLNLSGMELFASEREESDPLIIAGGSTVFNSEPIAAFIDLFFVGEAESMIIKLLNEY 179

Query: 88  RNLKNSR-------IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140
           +NLK +         K      + V    ++  GE+            G          +
Sbjct: 180 QNLKKAGLNKFEILKKLSKMPGIYVPSLYSEEYGEQ------------GEILALNSQAEV 227

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           +     + V + D +       +   D  + R       L I  GC + C FC       
Sbjct: 228 KEKVKKQVVQNLDQAFYPTDFLVPYRDTVHERV-----VLEISRGCTRSCRFCAAGMAYR 282

Query: 201 IEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
               RS+ ++++ A K + + G  EI+L   +            K     +    S    
Sbjct: 283 PVRERSVERLIELAEKALKSTGYDEISLTSLST-----VDYTDAKNLIKKMTEKFS--DK 335

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
           ++ +  ++      S  L +    +      L    ++GS R+   +N+  +      I 
Sbjct: 336 MISVSLSSLRVDKFSVELAEEVNKVRK--TGLTFAPEAGSQRLRDVINKNVSEE---DIY 390

Query: 320 DRIRSVRPD--IAISSDFIVGFPGETDDDFRATMDLVDKIG 358
              ++   +    I   F++G P ET +D +A  ++  KI 
Sbjct: 391 SAAKAAFENGWSKIKLYFMIGLPTETMEDVKAIAEMAKKIK 431


>gi|306821185|ref|ZP_07454800.1| radical SAM domain protein [Eubacterium yurii subsp. margaretiae
           ATCC 43715]
 gi|304550771|gb|EFM38747.1| radical SAM domain protein [Eubacterium yurii subsp. margaretiae
           ATCC 43715]
          Length = 615

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 60/315 (19%), Positives = 115/315 (36%), Gaps = 28/315 (8%)

Query: 53  YERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQA 112
           Y      D  D++ +       +  E +  FL   R  KNS        L+ VA  V   
Sbjct: 150 YNVEPIADFVDVVQV------GEGEEMMVEFLEIYRRHKNSGAYSKHKFLLDVARNVKGI 203

Query: 113 EGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNR 172
                   +   +   G      +P+        K+ +  D+      E+L + +     
Sbjct: 204 YVPSFYDVNYNED---GTFN-SIIPKYEGVPEIIKKRIVEDFDKSFYPEKLIVPNIEVVH 259

Query: 173 KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQN 231
            R     L I  GC + C FC           RS  ++ + ++ +  N G  EI+L+   
Sbjct: 260 SR---IMLEIFRGCTRGCRFCQAGMLYRPIRERSKEKLKEISKIMYKNSGFEEISLVS-- 314

Query: 232 VNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL 291
           +++     ++G       L+  L+EI  + +   +    R     L  A     V    +
Sbjct: 315 LSSSDYSDING-------LIDELNEIHEVEKTSISLPSLRLDGFSLDTAEKVQKVKKSGM 367

Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351
               ++GS R+   +N+  T+Y+ +  + +I S      +    ++G P ET +D    +
Sbjct: 368 TFAPEAGSQRMRDVINKGVTSYDLQDTMTKIFSSNYQ-RVKLYSMIGLPYETYED----L 422

Query: 352 DLVDKIGYAQAFSFK 366
           D +  +GY     ++
Sbjct: 423 DEIRNLGYTALNIYR 437


>gi|291530703|emb|CBK96288.1| Fe-S oxidoreductase [Eubacterium siraeum 70/3]
          Length = 636

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 52/314 (16%), Positives = 99/314 (31%), Gaps = 52/314 (16%)

Query: 112 AEGEEILRRSPIVNVVVGPQTYYRLPEL-LERARFGKRVVDTDYSVEDKFERLSIVDGGY 170
           A  +   ++    + V G     R   + L +    + +  +++    +   +      Y
Sbjct: 223 AYAKSCRQQYDEQDEVYGKTMVQRHGNMMLVQNPPQRSLTQSEFDKAYELPYMKAYHPCY 282

Query: 171 NRKRGVTAFLTI------QEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDN-GV 222
            +  GV     +        GC  +C FC +   +G  I +RS   V++EA  L    G 
Sbjct: 283 EKGGGVPGIKEVEFSITHNRGCFGYCNFCSIALHQGRRIQTRSEESVINEAIDLTKKPGF 342

Query: 223 C-EITLLGQNVNAWRGKGLD---------GEKCT--------------FSDLLYSLSEIK 258
              I  +G     +R    D         G+KC               + D+L  +  IK
Sbjct: 343 KGYIHDVGGPTANFRRTSCDKQEKAGLCKGKKCLAPEPCPALKVDHSEYLDMLRKIRSIK 402

Query: 259 GLVR------LRYTTSHP---RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
            + R      +RY         +    L++ H     +   L +  +  S+++L  M + 
Sbjct: 403 NVKRVFIRSGIRYDYMMKDKNDEFFKELVEHH-----VSGQLKVAPEHASNKVLDLMGKP 457

Query: 310 HTAYEYRQIIDRIRSVRPDIA----ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           H    Y     +      +      +    +   PG T  +       + K         
Sbjct: 458 H-IEVYEDFEKKFYKYTKECGKEQYLVPYLMSSHPGCTIKEAVELAVFLKKHNIRPEQVQ 516

Query: 366 KYSPRLGTPGSNML 379
            + P  GT  + M 
Sbjct: 517 DFYPTPGTISTAMY 530


>gi|218848346|ref|YP_002455178.1| radical SAM domain protein [Bacillus cereus AH820]
 gi|229113468|ref|ZP_04242918.1| Radical SAM domain protein [Bacillus cereus Rock1-15]
 gi|229164710|ref|ZP_04292574.1| Radical SAM domain protein [Bacillus cereus R309803]
 gi|218540397|gb|ACK92793.1| radical SAM domain protein [Bacillus cereus AH820]
 gi|228618790|gb|EEK75752.1| Radical SAM domain protein [Bacillus cereus R309803]
 gi|228669986|gb|EEL25379.1| Radical SAM domain protein [Bacillus cereus Rock1-15]
          Length = 438

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 39/207 (18%), Positives = 74/207 (35%), Gaps = 24/207 (11%)

Query: 176 VTAFLTIQEGCDKFCTFCVVPYTR-GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA 234
           V     I  GC   C +C V     G  I      V+ + R L++ G+  +T +  +   
Sbjct: 194 VVGSTEIARGCHHKCLYCSVFAAYDGKVILVPEEIVLQDVRNLVEGGMTHLTFIDADFFN 253

Query: 235 WRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL-MPYLHL 293
                    K     +L  L E      L Y  +   D      K   ++  L + ++  
Sbjct: 254 --------AKYHGIKILRKLHE--EFPELTYDFTTRVDHILENKKTLAEMKELGVKFITS 303

Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
            ++  S+ +L ++ +  +  +  Q I  +R +  DI ++  FI+  P  T +D       
Sbjct: 304 ALEFPSEEVLDAVAKDTSVADIEQGIAYLREI--DIKLNPTFIMFNPWTTFEDLTTFRSF 361

Query: 354 VDKIGY----------AQAFSFKYSPR 370
           V+               + + +K SP 
Sbjct: 362 VEDNELGNIIDPIQYETRLYLYKGSPL 388


>gi|84489321|ref|YP_447553.1| Fe-S oxidoreductase [Methanosphaera stadtmanae DSM 3091]
 gi|84372640|gb|ABC56910.1| predicted Fe-S oxidoreductase [Methanosphaera stadtmanae DSM 3091]
          Length = 507

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 84/220 (38%), Gaps = 23/220 (10%)

Query: 167 DGGYNRKRGVTAF-LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEI 225
           D  +    G  AF + +  GC + C FC+            L  +++ A       +   
Sbjct: 197 DKRFTPAFGSNAFLMEVSRGCTRGCRFCMSGCMYRPRREVPLKTLIETA-------IKTR 249

Query: 226 TLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLD 285
            + GQN  A  G+ +  +     +L + L+E     ++   +     +SD L++   +  
Sbjct: 250 QVTGQNKVALLGEAVS-DYSRIEELCWKLTEEG--FQIATPSLRVESVSDELLEILKE-- 304

Query: 286 VLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDD 345
             +  + +  ++   +  K  N+  T  +  + IDR  S++  + +    ++G P ET D
Sbjct: 305 NGLKTITIAPETIEKQRWKL-NKPMTDQQIIETIDRAMSLK--LKVKMYLLLGTPYETSD 361

Query: 346 DFRATMDLVDK-----IGYA--QAFSFKYSPRLGTPGSNM 378
           D    ++ +       + Y   +       P+  TP   M
Sbjct: 362 DIMELINFLRDITSKAVRYNTIKTSVNPLIPKPHTPLQYM 401


>gi|81243107|gb|ABB63817.1| O2-independent coproporphyrinogen III oxidase [Shigella dysenteriae
           Sd197]
          Length = 459

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 44/269 (16%), Positives = 92/269 (34%), Gaps = 30/269 (11%)

Query: 157 EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS-------LSQ 209
           ED  E+  +       +R ++ ++ I   C K C FC        +  ++         +
Sbjct: 36  EDFGEQAFLQAVARYPERPLSLYVHIPF-CHKLCYFCGCNKIVTRQQHKADQYLDALEQE 94

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE-----IKGLVRLR 264
           +V  A       V ++   G       G      K   S L+  L E         + + 
Sbjct: 95  IVHRAPLFAGRHVSQLHWGG-------GTPTYLNKAQISRLMKLLRENFQFNADAEISIE 147

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
                PR++   ++            L + VQ  +  + + +NR         +++  R 
Sbjct: 148 V---DPREIELDVLDHLRAEG--FNRLSMGVQDFNKEVQRLVNREQDEEFIFALLNHARE 202

Query: 325 VRPDIAISS-DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQV 382
           +   +  ++ D I G P +T + F  T+  V ++   +   F Y+       +   ++  
Sbjct: 203 I--GLTSTNIDLIYGLPKQTPESFAFTLKRVAELNPDRLSVFNYAHLPTIFAAQRKIKDA 260

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVG 411
           D     ++L  LQ+ +     S     +G
Sbjct: 261 DLPSPQQKLDILQETIAFLTQSGYQ-FIG 288


>gi|30064844|ref|NP_839015.1| coproporphyrinogen III oxidase [Shigella flexneri 2a str. 2457T]
 gi|56480460|ref|NP_709665.2| coproporphyrinogen III oxidase [Shigella flexneri 2a str. 301]
 gi|110807449|ref|YP_690969.1| coproporphyrinogen III oxidase [Shigella flexneri 5 str. 8401]
 gi|30043104|gb|AAP18826.1| O2-independent coproporphyrinogen III oxidase [Shigella flexneri 2a
           str. 2457T]
 gi|56384011|gb|AAN45372.2| O2-independent coproporphyrinogen III oxidase [Shigella flexneri 2a
           str. 301]
 gi|110616997|gb|ABF05664.1| O2-independent coproporphyrinogen III oxidase [Shigella flexneri 5
           str. 8401]
 gi|281603255|gb|ADA76239.1| O2-independent coproporphyrinogen III oxidase [Shigella flexneri
           2002017]
 gi|313647094|gb|EFS11549.1| oxygen-independent coproporphyrinogen III oxidase [Shigella
           flexneri 2a str. 2457T]
 gi|332751494|gb|EGJ81895.1| oxygen-independent coproporphyrinogen III oxidase [Shigella
           flexneri K-671]
 gi|332753192|gb|EGJ83575.1| oxygen-independent coproporphyrinogen III oxidase [Shigella
           flexneri 2747-71]
 gi|332764609|gb|EGJ94841.1| oxygen-independent coproporphyrinogen III oxidase [Shigella
           flexneri 2930-71]
 gi|333013945|gb|EGK33307.1| oxygen-independent coproporphyrinogen III oxidase [Shigella
           flexneri K-304]
          Length = 457

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 44/269 (16%), Positives = 91/269 (33%), Gaps = 30/269 (11%)

Query: 157 EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS-------LSQ 209
           ED  E+  +       +R ++ ++ I   C K C FC        +  ++         +
Sbjct: 34  EDFGEQAFLQAVARYPERPLSLYVHIPF-CHKLCYFCGCNKIVTRQQHKADQYLDALEQE 92

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE-----IKGLVRLR 264
           +V  A       V ++   G       G      K   S L+  L E         + + 
Sbjct: 93  IVHRAPLFAGRHVSQLHWGG-------GTPTYLNKAQISRLMKLLRENFHFNTDAEISIE 145

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
                PR++   ++            L + VQ  +  + + +NR         +++  R 
Sbjct: 146 V---DPREIELDVLDHLRAEG--FNRLSMGVQDFNKEVQRLVNREQDEEFIFALLNHARE 200

Query: 325 VRPDIAISS-DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQV 382
           +      ++ D I G P +T + F  T+  V ++   +   F Y+       +   ++  
Sbjct: 201 I--GFTSTNIDLIYGLPKQTPESFAFTLKRVAELNPDRLSVFNYAHLPTIFAAQRKIKDA 258

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVG 411
           D     ++L  LQ+ +     S     +G
Sbjct: 259 DLPSPQQKLDILQETIAFLTQSGYQ-FIG 286


>gi|262192284|ref|ZP_06050440.1| hypothetical protein VIH_002672 [Vibrio cholerae CT 5369-93]
 gi|262031834|gb|EEY50416.1| hypothetical protein VIH_002672 [Vibrio cholerae CT 5369-93]
          Length = 312

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/124 (24%), Positives = 50/124 (40%), Gaps = 12/124 (9%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +L L +Q+  D+ LK +NR H    Y +I  + R++   I + +  IVG PGE   +   
Sbjct: 141 WLELGLQTAHDQTLKRINRGHDFACYAEITAKARAL--GIKVCTHLIVGLPGEGRTENLT 198

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDAC 409
           T+  V K+G             G+  +          KA R   L    +++ VS     
Sbjct: 199 TLQQVLKVGTDGIKLHGLHIVEGSTMA----------KAWRAGRLTVLDQDEYVSIACEM 248

Query: 410 VGQI 413
           +   
Sbjct: 249 IRST 252


>gi|298530638|ref|ZP_07018040.1| oxygen-independent coproporphyrinogen III oxidase
           [Desulfonatronospira thiodismutans ASO3-1]
 gi|298510012|gb|EFI33916.1| oxygen-independent coproporphyrinogen III oxidase
           [Desulfonatronospira thiodismutans ASO3-1]
          Length = 375

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/224 (15%), Positives = 71/224 (31%), Gaps = 11/224 (4%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C   C +C   +     I    +  +   ++ ++    +I    + V +    G      
Sbjct: 10  CRTKCAYCA--FASQEYIQEPAAVYLRLVQQELEVRSRQIQ--HRKVTSIYMGGGTPTVL 65

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY----LHLPVQSGSDR 301
             + L   +  +              + +   I    DL V        + L +QS  D+
Sbjct: 66  PVASLARIVDAVYKNFDPVPGCEFTLEANPENILEMDDLQVFSSMGINRISLGMQSLDDQ 125

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAI-SSDFIVGFPGETDDDFRATMDLVDKIGYA 360
           +L ++ R H + +  +    IR      A+ S DFI G PG+T   +   +     +   
Sbjct: 126 LLGTLERGHDSRQAIKAARMIRQA--GFALLSLDFIWGIPGQTLKGWLGELAHAVHLAPD 183

Query: 361 QAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVS 404
               +      GT  +  +   +  +  ER          + + 
Sbjct: 184 HLSCYGLGLEPGTRLTARIRAGELEMPEERAQARMYMHGAEYLE 227


>gi|218782935|ref|YP_002434253.1| radical SAM domain protein [Desulfatibacillum alkenivorans AK-01]
 gi|218764319|gb|ACL06785.1| Radical SAM domain protein [Desulfatibacillum alkenivorans AK-01]
          Length = 529

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 49/373 (13%), Positives = 105/373 (28%), Gaps = 64/373 (17%)

Query: 63  DLIVLNTCHIREKAAEKVYSFLGRIR-----------------NLKNSRIKEGGDLLVVV 105
           D+ +L+ C +R+   + +  ++   R                        KE    + + 
Sbjct: 56  DITILD-CCVRQMGWKSLTKYIRETRPDIVAIGEKTVFYHEGFRAFELVKKEAPQAVTIA 114

Query: 106 AGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE----------------RARFGKRV 149
            G +  A  +  L     V+ VV  +    L +L+                 R   GK  
Sbjct: 115 GGVMYTALPQWTLDTCKAVDYVVLYEGEETLRDLVTTLRDGGEPSSVRGIAYRDADGKPA 174

Query: 150 VDTDYSVEDKFERLSIV---------DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           +     + +  + L +             +         +    GC   C FC      G
Sbjct: 175 LTPARPLIENLDDLPMPAYDLAGMDYYKPFGHLWPKAITVQRSRGCIANCNFCSWRIQEG 234

Query: 201 I-------------EISRSLSQVVDEARK-LIDNGVCEITLLGQNVNAWRGKGLDGEKCT 246
                           ++S  ++ DE      D GV  +  +    NA     ++     
Sbjct: 235 RPQLVDGKYVSHQAYRTKSPLRMADEIEWLYRDFGVRYLFWVDGTWNADHDWLVEF---- 290

Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306
             ++L    ++ G              +  ++     +     +  L  +  S + L  +
Sbjct: 291 CEEILRRDIKLDGWWAFVRADKLVEQDAKGILPLM--VKAGFRHTLLGAEHDSQQSLDYV 348

Query: 307 NRR-HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           N+        ++    +    P++   + +I G P +T D  +  +          A   
Sbjct: 349 NKGLKDYNLTQEAFRILSEKHPEVFRQATYITGLPDDTVDSIKGLLKHAHACNLDFAAFH 408

Query: 366 KYSPRLGTPGSNM 378
              P  GT   + 
Sbjct: 409 PIQPFPGTQFYDW 421


>gi|313113519|ref|ZP_07799108.1| radical SAM domain protein [Faecalibacterium cf. prausnitzii
           KLE1255]
 gi|310624246|gb|EFQ07612.1| radical SAM domain protein [Faecalibacterium cf. prausnitzii
           KLE1255]
          Length = 489

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/180 (18%), Positives = 61/180 (33%), Gaps = 23/180 (12%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLID---NGVCEITLLGQNVNAWRGKGLDG 242
           C   C++C         +S +L +     +  +D     V EI +              G
Sbjct: 170 CPSRCSYCS-------FVSCNLDRDRKMVQPYVDCLCREVEEIRIQADKAGLKLCSIYIG 222

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCL----------IKAHGDLDVLMPYLH 292
                S     L ++ G VR  +  S   + +             +    +       + 
Sbjct: 223 GGTPTSLSADQLRQLMGTVRANFDLSKVVEYTVEAGRPDCTDAEKLAVIKEYG--ATRIS 280

Query: 293 LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352
           +  Q+ SD +L  + R+H+A +        R    D  I+ D I G PG+T + F  ++ 
Sbjct: 281 INPQTFSDEVLAGIGRKHSAQDILDCYAEARKAGHD-DINMDLIAGLPGDTVESFERSLR 339


>gi|302184943|ref|ZP_07261616.1| coproporphyrinogen III oxidase [Pseudomonas syringae pv. syringae
           642]
          Length = 460

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 40/246 (16%), Positives = 85/246 (34%), Gaps = 22/246 (8%)

Query: 160 FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC----VVPYTRGIEISR--SLSQVVDE 213
           F+ L  +       R ++ ++ +   C   C +C    V+   RG   +    L   +  
Sbjct: 38  FDLLHALRESRKASRPLSLYVHLPF-CANICYYCACNKVITKDRGRAQAYLQRLEHEMQM 96

Query: 214 ARKLIDNG--VCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPR 271
               +  G  V ++ L G          L             L +  G   +        
Sbjct: 97  LACHLAPGQVVEQLHLGGGTPTFLSHDELRRLMAQLRLHFNLLDDDSGDYGIEIDPREAD 156

Query: 272 DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAI 331
             +  L++  G        + L VQ     + +++NR  +  E R I++  R+++   ++
Sbjct: 157 WSTMGLLRELG-----FNRVSLGVQDLDPTVQRAINRMQSLEETRAIVEAARTLQFR-SV 210

Query: 332 SSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY-------SPRLGTPGSNMLEQVDE 384
           + D I G P +    F  T+D +  +   +   F Y        P+     +++ +   +
Sbjct: 211 NIDLIYGLPAQNPQTFSHTVDKIIDLQPDRLSVFNYAHLPERFMPQRRIEAADLPDAASK 270

Query: 385 NVKAER 390
            +  ER
Sbjct: 271 LLMLER 276


>gi|296332403|ref|ZP_06874864.1| coproporphyrinogen III oxidase [Bacillus subtilis subsp. spizizenii
           ATCC 6633]
 gi|305673684|ref|YP_003865356.1| coproporphyrinogen III oxidase [Bacillus subtilis subsp. spizizenii
           str. W23]
 gi|296150321|gb|EFG91209.1| coproporphyrinogen III oxidase [Bacillus subtilis subsp. spizizenii
           ATCC 6633]
 gi|305411928|gb|ADM37047.1| coproporphyrinogen III oxidase [Bacillus subtilis subsp. spizizenii
           str. W23]
          Length = 501

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 42/228 (18%), Positives = 85/228 (37%), Gaps = 19/228 (8%)

Query: 152 TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR-----GIEIS-- 204
            +   E    +L+ V   Y  K  V+ ++ I   C   C +C  P        G   S  
Sbjct: 147 IELMQEIVDRQLAAVPDLYQVKDEVSIYIGIPF-CPTKCAYCTFPAYAIQGQAGRVGSFL 205

Query: 205 ----RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
                 + ++ +  ++  D  V  I   G    +   + +D     + +++ S  ++K +
Sbjct: 206 WGLHYEMQKIGEWLKEH-DVKVTTIYFGGGTPTSITAEEMDL---LYEEMVRSFPDVKNI 261

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
             +      P  +++  +      D+    + +  QS  +  LK++ R HT  E  +   
Sbjct: 262 REITVEAGRPDTITEEKLAVLNKYDI--DRISINPQSYENETLKAIGRHHTVEETIEKYH 319

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
             R    +  I+ D I+G PGE   +FR ++   +K+          S
Sbjct: 320 LSRRHGMN-NINMDLIIGLPGEGVKEFRHSLSETEKLMPESLTVHTLS 366


>gi|229125491|ref|ZP_04254538.1| Radical SAM domain protein [Bacillus cereus 95/8201]
 gi|228657958|gb|EEL13751.1| Radical SAM domain protein [Bacillus cereus 95/8201]
          Length = 420

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 39/207 (18%), Positives = 74/207 (35%), Gaps = 24/207 (11%)

Query: 176 VTAFLTIQEGCDKFCTFCVVPYTR-GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA 234
           V     I  GC   C +C V     G  I      V+ + R L++ G+  +T +  +   
Sbjct: 176 VVGSTEIARGCHHKCLYCSVFAAYDGKVILVPEEIVLQDVRNLVEGGMTHLTFIDADFFN 235

Query: 235 WRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL-MPYLHL 293
                    K     +L  L E      L Y  +   D      K   ++  L + ++  
Sbjct: 236 --------AKYHGIKILRKLHE--EFPELTYDFTTRVDHILENKKTLAEMKELGVKFITS 285

Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
            ++  S+ +L ++ +  +  +  Q I  +R +  DI ++  FI+  P  T +D       
Sbjct: 286 ALEFPSEEVLDAVAKDTSVADIEQGIAYLREI--DIKLNPTFIMFNPWTTFEDLTTFRSF 343

Query: 354 VDKIGY----------AQAFSFKYSPR 370
           V+               + + +K SP 
Sbjct: 344 VEDNELGNIIDPIQYETRLYLYKGSPL 370


>gi|227833636|ref|YP_002835343.1| oxygen-independent coproporphyrinogen III oxidase [Corynebacterium
           aurimucosum ATCC 700975]
 gi|227454652|gb|ACP33405.1| oxygen-independent coproporphyrinogen III oxidase [Corynebacterium
           aurimucosum ATCC 700975]
          Length = 382

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 50/237 (21%), Positives = 80/237 (33%), Gaps = 25/237 (10%)

Query: 186 CDKFCTFC----VVP-YTRGIEIS---RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG 237
           C   C +C      P    G   S    +L + ++ A   +D    E   +G    +  G
Sbjct: 13  CASRCGYCDFNTYTPGELGGDLTSDYLVALEKELEMAAVQVDREA-ETVFIGGGTPSLLG 71

Query: 238 KGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQS 297
               G       +L  + +  GL      T+     S       G LD     L L +QS
Sbjct: 72  AEGLGR------VLSKVRDTFGLAPGAEVTTESNPESTSPEYFAGLLDAGFTRLSLGMQS 125

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRP-DI-AISSDFIVGFPGETDDDFRATMDLVD 355
            S  +L  + R HT     +  D  R         ++ D I G P E D D   T++   
Sbjct: 126 ASPGVLAVLERAHTPG---RAFDAAREAIAAGFEHVNLDMIYGTPTEEDADVALTLERAL 182

Query: 356 KIGYAQAFSFKYSPRLGTPGSN-----MLEQVDENVKAERLLCLQKKLREQQVSFND 407
           + G     ++      GT  +      +L   DE+V A R   +   L  +   + +
Sbjct: 183 ETGVDHISAYSLIVEDGTRMARKVSKGLLPAPDEDVLARRYEMISSTLEAEGFEWYE 239


>gi|161950011|ref|YP_405308.2| coproporphyrinogen III oxidase [Shigella dysenteriae Sd197]
 gi|309783775|ref|ZP_07678421.1| oxygen-independent coproporphyrinogen III oxidase [Shigella
           dysenteriae 1617]
 gi|308928358|gb|EFP73819.1| oxygen-independent coproporphyrinogen III oxidase [Shigella
           dysenteriae 1617]
          Length = 457

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 44/269 (16%), Positives = 92/269 (34%), Gaps = 30/269 (11%)

Query: 157 EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS-------LSQ 209
           ED  E+  +       +R ++ ++ I   C K C FC        +  ++         +
Sbjct: 34  EDFGEQAFLQAVARYPERPLSLYVHIPF-CHKLCYFCGCNKIVTRQQHKADQYLDALEQE 92

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE-----IKGLVRLR 264
           +V  A       V ++   G       G      K   S L+  L E         + + 
Sbjct: 93  IVHRAPLFAGRHVSQLHWGG-------GTPTYLNKAQISRLMKLLRENFQFNADAEISIE 145

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
                PR++   ++            L + VQ  +  + + +NR         +++  R 
Sbjct: 146 V---DPREIELDVLDHLRAEG--FNRLSMGVQDFNKEVQRLVNREQDEEFIFALLNHARE 200

Query: 325 VRPDIAISS-DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQV 382
           +   +  ++ D I G P +T + F  T+  V ++   +   F Y+       +   ++  
Sbjct: 201 I--GLTSTNIDLIYGLPKQTPESFAFTLKRVAELNPDRLSVFNYAHLPTIFAAQRKIKDA 258

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVG 411
           D     ++L  LQ+ +     S     +G
Sbjct: 259 DLPSPQQKLDILQETIAFLTQSGYQ-FIG 286


>gi|44004505|ref|NP_982173.1| radical SAM domain-containing protein [Bacillus cereus ATCC 10987]
 gi|190015070|ref|YP_001966787.1| radical SAM domain protein [Bacillus cereus]
 gi|190015336|ref|YP_001967111.1| radical SAM domain protein [Bacillus cereus]
 gi|296506586|ref|YP_003667820.1| radical SAM domain protein [Bacillus thuringiensis BMB171]
 gi|42741571|gb|AAS45016.1| radical SAM domain protein [Bacillus cereus ATCC 10987]
 gi|116584746|gb|ABK00861.1| radical SAM domain protein [Bacillus cereus]
 gi|116585017|gb|ABK01126.1| radical SAM domain protein [Bacillus cereus]
 gi|296327173|gb|ADH10100.1| radical SAM domain protein [Bacillus thuringiensis BMB171]
          Length = 424

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 39/207 (18%), Positives = 74/207 (35%), Gaps = 24/207 (11%)

Query: 176 VTAFLTIQEGCDKFCTFCVVPYTR-GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA 234
           V     I  GC   C +C V     G  I      V+ + R L++ G+  +T +  +   
Sbjct: 180 VVGSTEIARGCHHKCLYCSVFAAYDGKVILVPEEIVLQDVRNLVEGGMTHLTFIDADFFN 239

Query: 235 WRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL-MPYLHL 293
                    K     +L  L E      L Y  +   D      K   ++  L + ++  
Sbjct: 240 --------AKYHGIKILRKLHE--EFPELTYDFTTRVDHILENKKTLAEMKELGVKFITS 289

Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
            ++  S+ +L ++ +  +  +  Q I  +R +  DI ++  FI+  P  T +D       
Sbjct: 290 ALEFPSEEVLDAVAKDTSVADIEQGIAYLREI--DIKLNPTFIMFNPWTTFEDLTTFRSF 347

Query: 354 VDKIGY----------AQAFSFKYSPR 370
           V+               + + +K SP 
Sbjct: 348 VEDNELGNIIDPIQYETRLYLYKGSPL 374


>gi|77458040|ref|YP_347545.1| coproporphyrinogen III oxidase [Pseudomonas fluorescens Pf0-1]
 gi|77382043|gb|ABA73556.1| oxygen-independent coproporphyrinogen III oxidase [Pseudomonas
           fluorescens Pf0-1]
          Length = 460

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 44/271 (16%), Positives = 96/271 (35%), Gaps = 25/271 (9%)

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC----VVPYTRGI---EISRS 206
           +S    F+    +       R ++ ++ +   C   C +C    V+   RG     + R 
Sbjct: 32  HSQVGTFDLFHALRDSRKALRPLSLYVHVPF-CANICYYCACNKVITKDRGRALPYLQRL 90

Query: 207 LSQV-VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
             ++ +          V ++   G          L             L +  G   +  
Sbjct: 91  EQEIQLIACHLDPAQKVEQLHFGGGTPTFLSHDELRQLMAHLRKHFNLLDDDSGDYGIEI 150

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
                   +  L++  G        + + +Q     + +++NR  +  E R +ID  R++
Sbjct: 151 DPREADWSTMGLLRELG-----FNRVSIGLQDLDPAVQRAVNRLQSLEETRAVIDAARTL 205

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ--VD 383
           +   +I+ D I G P +T D+F  T++ V  +   +   F Y+          + Q  ++
Sbjct: 206 QFR-SINIDLIYGLPKQTPDNFARTVEEVISLQPDRLSVFNYAHLP----ERFMPQRRIN 260

Query: 384 ENV---KAERLLCLQKKLREQQVSFNDACVG 411
            N     A++L  LQ+ + +   +     +G
Sbjct: 261 GNELPSPAQKLEMLQRTIEQLTAAGY-RYIG 290


>gi|281420046|ref|ZP_06251045.1| radical SAM domain protein [Prevotella copri DSM 18205]
 gi|281405846|gb|EFB36526.1| radical SAM domain protein [Prevotella copri DSM 18205]
          Length = 730

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 47/313 (15%), Positives = 98/313 (31%), Gaps = 64/313 (20%)

Query: 120 RSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT-- 177
           ++  V  +           +++       VV+  + +    E  +  D  Y R       
Sbjct: 236 QAENVRHLEEEANKMHAQRMIQEVDGKYVVVNPPFPLMTTAELDAAFDLPYTRLPHPKYK 295

Query: 178 -----AFLTI------QEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDN----- 220
                A+  I        GC   C+FC +   +G   + RS   ++ E +K+I       
Sbjct: 296 GKTIPAYEMIKFSVNLHRGCFGGCSFCTISAHQGKFVVCRSKESILKEVKKIIQMPDFKG 355

Query: 221 -----GVCEITLLGQN---------------VNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
                G     + G +               VN      L+ +     ++ +++  + G+
Sbjct: 356 YLSDLGGPSANMYGMHGKNQKACEVCKRPSCVNPQICPNLNTDHSKLLEIYHAVDALPGI 415

Query: 261 VRLRYT-----------------TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
            +                         R+ +  LI        +   L +  +  S  +L
Sbjct: 416 KKSFIGSGVRYDLLLHKSKDEKVNQAAREYTRELI-----TKHVSGRLKVAPEHTSPEVL 470

Query: 304 KSMNRRH--TAYEYRQIIDRI-RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
           K M +      YE+++I D+I +    +  I   FI   PG  ++D      +   + + 
Sbjct: 471 KFMRKPSFDLFYEFKRIFDKINKEEGLNQQIIPYFISSHPGCHEEDMAELAVITKGLDFH 530

Query: 361 QAFSFKYSPRLGT 373
                 ++P   T
Sbjct: 531 LEQVQDFTPTPMT 543


>gi|224495618|gb|ACN52303.1| TsrM [Streptomyces laurentii]
 gi|225055396|gb|ACN80682.1| TsrT [Streptomyces laurentii]
          Length = 599

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 37/202 (18%), Positives = 71/202 (35%), Gaps = 9/202 (4%)

Query: 161 ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS-LSQVVDEARKLID 219
           E   + +  Y R+ G+ + LT + GC   C+FCV P  +G + +R  ++ VVDE   L  
Sbjct: 229 EPYKVDNLRYYREGGLGSILT-KNGCVYKCSFCVEPDAKGTQFARRGITAVVDEMEALTA 287

Query: 220 NGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIK 279
            G+ ++       N       +  +       +  +     +RL      P    +   +
Sbjct: 288 QGIHDLHTTDSEFNLSIAHSKNLLREIVRRRDHDATSPLRDLRLWVYC-QPSPFDEEFAE 346

Query: 280 AHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR----SVRPDIAISSDF 335
                      +++        +L           Y    D  R      R  +    + 
Sbjct: 347 LLAAAG--CAGVNIGADHTRPEMLDGWKVTAKGTRYYDFADTERLVQLCHRNGMLTMVEA 404

Query: 336 IVGFPGETDDDFRATMDLVDKI 357
           + G PGET +  R  +D + ++
Sbjct: 405 LFGMPGETLETMRDCVDRMMEL 426


>gi|222100769|ref|YP_002535337.1| Radical SAM domain protein [Thermotoga neapolitana DSM 4359]
 gi|221573159|gb|ACM23971.1| Radical SAM domain protein [Thermotoga neapolitana DSM 4359]
          Length = 325

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 42/253 (16%), Positives = 87/253 (34%), Gaps = 22/253 (8%)

Query: 114 GEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNR- 172
           GE  +    +V  + G + + R+  +  R     +   +   V+D       V     R 
Sbjct: 4   GEGEITFYELVKAIFGDKDWRRIHGVAYREEGEIKTTPSRSLVKDLNSLPFPVRDNLPRI 63

Query: 173 -KRGVTAFLTIQEGCDKFCTFC-VVPY---TRGIEISRSLSQVVDEARKLIDN-GVCEIT 226
            ++   A +    GC   C+FC VVP+          R    VVDE   L+    +  + 
Sbjct: 64  YEKTGAASVITSRGCYASCSFCSVVPFYEKFGPKIRLRDPENVVDELEVLVKEYKIENVI 123

Query: 227 LLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV 286
               N    + +            L     I+         S   ++ + L +   +   
Sbjct: 124 FCDANFTISKERAAKIATEIIRRKLKLRYAIE---------SRVTEVDERLFRLLKESG- 173

Query: 287 LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGET-DD 345
            +  + L ++SGS  +L    +  T  +  + ++ +  +  D+ +S  FI  F   T  +
Sbjct: 174 -LRRVFLGLESGSQSMLDRFRKGVTVEQNLKALEILSKL--DLYVSPGFI-MFDDRTSLE 229

Query: 346 DFRATMDLVDKIG 358
           + +     +  + 
Sbjct: 230 ELQENAKFLKIVR 242


>gi|152985311|ref|YP_001349140.1| coproporphyrinogen III oxidase [Pseudomonas aeruginosa PA7]
 gi|150960469|gb|ABR82494.1| oxygen-independent coproporphyrinogen III oxidase [Pseudomonas
           aeruginosa PA7]
          Length = 460

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 81/223 (36%), Gaps = 19/223 (8%)

Query: 159 KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC----VVPYTRGIEISRS-LSQVVDE 213
            F++L  +         ++ ++ I   C   C +C    V+   RG   S   L+++V E
Sbjct: 37  PFDQLHALRDSRKAGHPLSLYVHIPF-CANICYYCACNKVITKDRG--RSAPYLARLVRE 93

Query: 214 ARK-----LIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
                     +  V ++   G          L          L  L +  G   +     
Sbjct: 94  IEIVSRHLSREQVVEQLHFGGGTPTFLSPGQLRELMSQLRTHLNLLDDDSGDYGIEIDPR 153

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
                +  L++  G        + L VQ     + K++NR  T  E R I++  R+++  
Sbjct: 154 EADWSTMGLLRELG-----FNRVSLGVQDFDMEVQKAVNRMQTPEETRTIVEAARTLQYR 208

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
            +I+ D I G P +T D F  T+D V  +   +   F Y+   
Sbjct: 209 -SINLDLIYGLPKQTPDSFARTVDEVLALQPDRLSVFNYAHLP 250


>gi|73662483|ref|YP_301264.1| coproporphyrinogen III oxidase [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|72494998|dbj|BAE18319.1| oxygen-independent coproporphyrinogen oxidase III [Staphylococcus
           saprophyticus subsp. saprophyticus ATCC 15305]
          Length = 374

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/229 (15%), Positives = 90/229 (39%), Gaps = 17/229 (7%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDE-ARKLIDNGVCEITLLGQNVNAWRGKGLDGEK 244
           C + CT+C             + + +D   +++  +    +    + V    G       
Sbjct: 13  CVRICTYCDFNKYFIHNQ--PVDEYLDCLIKEMQYSKTKVL----ETVFVGGGTPTALSY 66

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304
                LL ++++I  +       ++P +++   ++   D    +  L + VQ+    +L+
Sbjct: 67  EQLKRLLKAITDIFEIKGEFSFEANPDELTLEKVQLLKDFG--VNRLSMGVQTFKPELLE 124

Query: 305 SMNRRHTAYEYRQIIDRIRSV-RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
            + R H   +  Q +   R+V  P I++  D +   P +T DDF+ +++    +      
Sbjct: 125 ILGRTHNTSDIYQAVTNARAVGIPSISL--DLMYHLPKQTIDDFKDSLEKALAMDIDHIS 182

Query: 364 SFKYSPRLGTPGSNMLE----QVD-ENVKAERLLCLQKKLREQQVSFND 407
           S+       T   NM +    ++  E++  E    L ++++  ++   +
Sbjct: 183 SYGLILEPKTQFYNMYKKGKLKIPNEDIGEEMYEYLLERMQRSELHQYE 231


>gi|329943906|ref|ZP_08292175.1| lipoyl synthase [Actinomyces sp. oral taxon 170 str. F0386]
 gi|328531339|gb|EGF58181.1| lipoyl synthase [Actinomyces sp. oral taxon 170 str. F0386]
          Length = 343

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 45/249 (18%), Positives = 80/249 (32%), Gaps = 25/249 (10%)

Query: 184 EGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
           E C + C FC +   R  E    + +    A  + +  +   T+ G      R    DG 
Sbjct: 81  EMCTRRCDFCDIATGRPTE--YDVDEPRRVAVSVKEMELRYATVTGV----ARDDRPDGG 134

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
              +++    + E+     +       R   + L         ++ +    V     RI 
Sbjct: 135 AWLYAETARQVHELSPGTGVELLIPDFRGNPEALEDVFSSRPEVLGHNLETV----PRIF 190

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           K +    +      +I         +   S+ I+G  GET D+  A M  + +       
Sbjct: 191 KRIRPAFSYEGSLDVITAASES--GLVTKSNLILGM-GETRDEIEAAMAALVEARCDILT 247

Query: 364 SFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK 423
             +Y  R     S +   VD  VK +  + L +   E    F     G ++         
Sbjct: 248 ITQYL-RP----SKLHHPVDRWVKPQEFVDLSRLAEEI--GFAAVMSGPMVR-----SSY 295

Query: 424 EKGKLVGRS 432
             G L GR+
Sbjct: 296 RAGMLWGRA 304


>gi|326333955|ref|ZP_08200185.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Nocardioidaceae bacterium Broad-1]
 gi|325948234|gb|EGD40344.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Nocardioidaceae bacterium Broad-1]
          Length = 403

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 75/221 (33%), Gaps = 22/221 (9%)

Query: 186 CDKFCTFC----VVPYTRGIEISRS-----LSQVVDEARKLIDNGVCEITLLGQNVNAWR 236
           C   C +C          G  +SR       ++ V  AR+++      +      V    
Sbjct: 39  CTVRCGYCDFNTYTAVELGEGVSRQTYADQATEEVRLARRVLGERDKHV----DTVFFGG 94

Query: 237 GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQ 296
           G          + +L ++ +  GL      T+     S  L       +     L   +Q
Sbjct: 95  GTPTLLPAKDLTGILRAIKDEFGLADDVEVTTEANPDSVDLDYLRALREGGFTRLSFGMQ 154

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
           S    +L +++R H       +++  R    +  +S D I G PGE+ DD+R ++D    
Sbjct: 155 SAVPHVLHTLDRTHDPERVPLVVEWAREAGFE-QVSLDLIYGTPGESIDDWRTSLDTALA 213

Query: 357 IGYAQAFSFKYSPRLGTPGSN--------MLEQVDENVKAE 389
                  ++      GT  +         M ++ D   K E
Sbjct: 214 SNPDHISAYSLIVEDGTALARRVRRGELEMPDEDDLADKYE 254


>gi|206975123|ref|ZP_03236037.1| radical SAM domain protein [Bacillus cereus H3081.97]
 gi|206746544|gb|EDZ57937.1| radical SAM domain protein [Bacillus cereus H3081.97]
          Length = 424

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 39/207 (18%), Positives = 74/207 (35%), Gaps = 24/207 (11%)

Query: 176 VTAFLTIQEGCDKFCTFCVVPYTR-GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA 234
           V     I  GC   C +C V     G  I      V+ + R L++ G+  +T +  +   
Sbjct: 180 VVGSTEIARGCHHKCLYCSVFAAYDGKVILVPEEIVLQDVRNLVEGGMTHLTFIDADFFN 239

Query: 235 WRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL-MPYLHL 293
                    K     +L  L E      L Y  +   D      K   ++  L + ++  
Sbjct: 240 --------AKYHGIKILRKLHE--EFPELTYDFTTRVDHILENKKTLAEMKELGVKFITS 289

Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
            ++  S+ +L ++ +  +  +  Q I  +R +  DI ++  FI+  P  T +D       
Sbjct: 290 ALEFPSEEVLDAVAKDTSVADIEQGIAYLREI--DIKLNPTFIMFNPWTTFEDLTTFRSF 347

Query: 354 VDKIGY----------AQAFSFKYSPR 370
           V+               + + +K SP 
Sbjct: 348 VEDNELGNIIDPIQYETRLYLYKGSPL 374


>gi|328543736|ref|YP_004303845.1| Radical SAM domain protein [polymorphum gilvum SL003B-26A1]
 gi|326413480|gb|ADZ70543.1| Radical SAM domain protein [Polymorphum gilvum SL003B-26A1]
          Length = 640

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 56/318 (17%), Positives = 96/318 (30%), Gaps = 49/318 (15%)

Query: 93  SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDT 152
            R + G  +L    GC        +L   P V+ V+      R      R   G+ V   
Sbjct: 163 KRREPGLKVLFGGTGCDGD-MAAALLEAFPEVDAVM-TGDADRTIAAGVRHLAGEPVPAP 220

Query: 153 DYSVEDKFERLSIVDGG----------YNRKRGVTA---------------FLTIQEGC- 186
              +    +  +                 R  G  A                     GC 
Sbjct: 221 ANLLTRAAQHTTPAQIHIDAAELEARARPRYDGYIAQRAASPYAHTHDLTLLFEGSRGCW 280

Query: 187 ---DKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
               + C FC +   +     RS   V+DE   L D       L   +    R       
Sbjct: 281 WGDKRHCKFCGIRTVQEGFRQRSPQAVLDEIVALYDA-HRPYLLYATDAILSREHMF--- 336

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
                +L     E    ++L +      +++   +    D  V+   +   ++S SD +L
Sbjct: 337 -ALLPELARLRRETGRAIKLFFEV--KSNLTRADVALLADAGVVA--VQPGIESFSDAML 391

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA- 362
           +  ++  +       +  + +    I      +VG PGET DD RA + L  +I + Q  
Sbjct: 392 RRTDKGASGIRQLAALKWLCAY--GIDTIYGLLVGTPGETPDDLRALIALCGRIRHLQPP 449

Query: 363 ------FSFKYSPRLGTP 374
                    ++SP    P
Sbjct: 450 VSVNALGLHRFSPYFDAP 467


>gi|226941876|ref|YP_002796950.1| YhcC [Laribacter hongkongensis HLHK9]
 gi|226716803|gb|ACO75941.1| YhcC [Laribacter hongkongensis HLHK9]
          Length = 325

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 45/201 (22%), Positives = 70/201 (34%), Gaps = 25/201 (12%)

Query: 188 KFCTFCVVPYTRGIEISR----SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
             CTFC V        SR     L++ + +A+   D     +       N +       E
Sbjct: 43  GGCTFCNV-----RAFSRTADIPLAEQLQQAKTGADRARKYLAYFQAYTNTY------AE 91

Query: 244 KCTFSDLLYSL---SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300
             T   L  +    +++ GL  +        D    L+  + D    + +L L +QS  +
Sbjct: 92  VATLRGLYEAALTSADVVGLC-VGTRPDCVPDAVLDLLAGYRDQGYEV-WLELGLQSACN 149

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
             L  +NR H    Y   + R R     +A+ +  IVG PGE+      T+  V   G  
Sbjct: 150 ETLARINRGHGWAAYADAVRRAR--LRGLAVCTHLIVGLPGESPAQPLDTLARVVDAGVE 207

Query: 361 QAFSFKYSPRLGTPGSNMLEQ 381
                   P     GS M  Q
Sbjct: 208 GLKLH---PLHIVRGSRMAAQ 225


>gi|209921341|ref|YP_002295425.1| coproporphyrinogen III oxidase [Escherichia coli SE11]
 gi|209914600|dbj|BAG79674.1| coproporphyrinogen III oxidase [Escherichia coli SE11]
 gi|324019791|gb|EGB89010.1| oxygen-independent coproporphyrinogen III oxidase [Escherichia coli
           MS 117-3]
          Length = 457

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 46/269 (17%), Positives = 91/269 (33%), Gaps = 30/269 (11%)

Query: 157 EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS-------LSQ 209
           ED  E+  +       +R ++ ++ I   C K C FC        +  ++         +
Sbjct: 34  EDFGEQAFLQAVARYPERPLSLYVHIPF-CHKLCYFCGCNKIVTRQQHKADQYLDALEQE 92

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSH 269
           +V  A       V ++   G       G      K   S L+  L E       ++    
Sbjct: 93  IVHRAPLFAGRHVSQLHWGG-------GTPTYLNKAQISRLMKLLRE-----NFQFNADA 140

Query: 270 PRDMSDCLIKAHGD-LDVLM----PYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
              +     +   D LD L       L + VQ  +  + + +NR         +++  R 
Sbjct: 141 EISIEVDPREIELDVLDHLCAEGFNRLSMGVQDFNKEVQRLVNREQDEEFIFALLNHARE 200

Query: 325 VRPDIAISS-DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQV 382
           +      ++ D I G P +T + F  T+  V ++   +   F Y+       +   ++  
Sbjct: 201 I--GFTSTNIDLIYGLPKQTPESFAFTLKRVAELNPDRLSVFNYAHLPTIFAAQRKIKDA 258

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVG 411
           D     ++L  LQ+ +     S     +G
Sbjct: 259 DLPSPQQKLDILQETIAFLTQSGYQ-FIG 286


>gi|50290565|ref|XP_447714.1| hypothetical protein [Candida glabrata CBS 138]
 gi|74637499|sp|Q6FPY0|LIPA_CANGA RecName: Full=Lipoyl synthase, mitochondrial; AltName: Full=Lipoate
           synthase; Short=LS; Short=Lip-syn; AltName: Full=Lipoic
           acid synthase; Flags: Precursor
 gi|49527024|emb|CAG60659.1| unnamed protein product [Candida glabrata]
          Length = 388

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 51/338 (15%), Positives = 104/338 (30%), Gaps = 19/338 (5%)

Query: 68  NTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGE--EILRRSPIVN 125
           NT      A         RI   K++          V          +  E +R+     
Sbjct: 28  NTGSASAGAPNGQTRRRRRITEFKDALNLGPSFEDFVSGRAAGFTVVDPLEQMRQDREEY 87

Query: 126 VVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQ-- 183
             +       +P+ +   +  K V +   S   +  R   +   +  K    A  TI   
Sbjct: 88  KKLPKWLKVPIPKGVNYHKLKKDVKELKLSTVCEEARCPNIGECWGGKDKSKATATIMLL 147

Query: 184 -EGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG 242
            + C + C FC V   R        ++  + A  +   G+  + L   +    R    DG
Sbjct: 148 GDTCTRGCRFCSVKTNRNPAK-PDPTEPENTAEAISRWGLGYVVLTTVD----RDDLPDG 202

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
                ++ +  + +      +   T      +  ++       + +   +L         
Sbjct: 203 GAHHLAETVIKIKQKAPKTLVEALTGDFLG-NLEMVDVMAKSGLDVYAHNLETVEALTPH 261

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           ++     +       ++ R +   P +   +  ++G  GETDD    TM  +  I     
Sbjct: 262 VRDRRAGYRQS--LNVLKRAKETVPSLITKTSVMLGL-GETDDQIIQTMQDLRAINCDVI 318

Query: 363 FSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLRE 400
              +Y  R     +    +V E V+ E+    + K +E
Sbjct: 319 TFGQYM-RP----TKRHMKVVEYVRPEKFDYWKDKAKE 351


>gi|313497896|gb|ADR59262.1| HemN [Pseudomonas putida BIRD-1]
          Length = 460

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 41/269 (15%), Positives = 91/269 (33%), Gaps = 21/269 (7%)

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR------SL 207
           +S    F+ L+ +       R ++ ++ +   C   C +C        + +R       L
Sbjct: 32  HSEVGSFDLLNALRESRRAVRPLSLYVHVPF-CANICYYCACNKVITKDRARAAPYLQRL 90

Query: 208 SQVVDEARKLID--NGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            Q +      +     V ++   G          L     T     + L +  G   +  
Sbjct: 91  EQEIQLVACHLAPKQRVEQLHFGGGTPTFLSHVELRQLMATLRQHFHLLDDDSGDYGIEI 150

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
                   +  L++  G        + L VQ     + +++NR  +  + R +I+  R++
Sbjct: 151 DPREADWSTMGLLRELG-----FNRVSLGVQDLDPAVQRAINRLQSLEQTRTLIEAARTL 205

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY--SPRLGTPGSNML-EQV 382
           +   +++ D I G P +T + F  T++ V ++   +   F Y   P    P   +    +
Sbjct: 206 QFR-SVNLDLIYGLPKQTPEGFARTVEEVIRLQPDRLSVFNYAHLPERFMPQRRIDSNDL 264

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVG 411
                   L  L   + +   +     +G
Sbjct: 265 PSAAAK--LEMLHATIDQLTAAGY-RYIG 290


>gi|310658156|ref|YP_003935877.1| iron-only hydrogenase maturation protein [Clostridium sticklandii
           DSM 519]
 gi|308824934|emb|CBH20972.1| Iron-only hydrogenase maturation protein [Clostridium sticklandii]
          Length = 348

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 35/233 (15%), Positives = 70/233 (30%), Gaps = 28/233 (12%)

Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR---S 206
           ++ +       +  S+    Y     V   +     C   CT+C +      E++R   +
Sbjct: 26  INDEEREYLYEKAYSVRYEHYKNSVYVRGLIEFSNYCKNDCTYCGIS-IHNKELTRYHMT 84

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL----DGEKCTFSDLLYSLSEIKGLVR 262
             +V+  A      G     + G    ++            K  F +   +LS I    +
Sbjct: 85  PEEVIKTAEIGYSLGFRTFVMQGGEDTSFTDDKFAAIISSIKTQFPEAAVTLS-IGERSK 143

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
             Y   +       LI+       L   LH  +                   Y   I  +
Sbjct: 144 ESYQKLYDAGADRFLIRHETINKNLYEKLHPKM------------------SYENRIKSL 185

Query: 323 RSVRP-DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
             ++     + + F+VG PG+  +D    +  + ++         + P   TP
Sbjct: 186 FDLKDIGFQVGTGFMVGVPGQEIEDIADDLLFIKELNPHMIGIGPFIPHKNTP 238


>gi|319763990|ref|YP_004127927.1| oxygen-independent coproporphyrinogen iii oxidase [Alicycliphilus
           denitrificans BC]
 gi|330823746|ref|YP_004387049.1| oxygen-independent coproporphyrinogen III oxidase [Alicycliphilus
           denitrificans K601]
 gi|317118551|gb|ADV01040.1| oxygen-independent coproporphyrinogen III oxidase [Alicycliphilus
           denitrificans BC]
 gi|329309118|gb|AEB83533.1| oxygen-independent coproporphyrinogen III oxidase [Alicycliphilus
           denitrificans K601]
          Length = 460

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/196 (16%), Positives = 67/196 (34%), Gaps = 20/196 (10%)

Query: 186 CDKFCTFC-----VVPYTRGIEI-----SRSLSQVVDEARKLIDNGVCEITLLGQNVNAW 235
           C+  C +C     +  +    E+     SR +   +  A   +   V ++   G      
Sbjct: 64  CESLCYYCACNKIITRHPERAEVYLRYLSREID--LHTAHCGVGQHVSQLHFGGGTPTFL 121

Query: 236 RGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPV 295
                DG +     L  S   + G            D     +    +L      L   V
Sbjct: 122 SD---DGLRELIGMLKRSFVLVPGGEYSIEVDPRTVDEKR--LALLAELG--FNRLSFGV 174

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
           Q     + K+++R   A +   +I+  R +  + +++ D I G P +T + F  T+  V 
Sbjct: 175 QDFDPEVQKAVHRIQPAEKVFALIESARKLGFE-SVNVDLIYGLPRQTPESFDRTLAQVA 233

Query: 356 KIGYAQAFSFKYSPRL 371
           ++   +   + Y+   
Sbjct: 234 QLRPDRIALYAYAHLP 249


>gi|251791348|ref|YP_003006069.1| hypothetical protein Dd1591_3790 [Dickeya zeae Ech1591]
 gi|247539969|gb|ACT08590.1| conserved hypothetical protein [Dickeya zeae Ech1591]
          Length = 314

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/106 (29%), Positives = 46/106 (43%), Gaps = 9/106 (8%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +L L +QS  DR L+ +NR H    YRQ   R R+    + + S  IVG PGE+ +   +
Sbjct: 146 WLELGLQSAHDRTLRRINRGHDFACYRQTAQRARAR--GLKVCSHLIVGLPGESGEHCLS 203

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQ 395
           T+  V + G             G+  +   +       A RL  LQ
Sbjct: 204 TLQQVVEAGVDGVKLHPLHIVTGSVMAKAWQ-------AGRLAALQ 242


>gi|268590419|ref|ZP_06124640.1| lipoyl synthase [Providencia rettgeri DSM 1131]
 gi|291314333|gb|EFE54786.1| lipoyl synthase [Providencia rettgeri DSM 1131]
          Length = 321

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/212 (15%), Positives = 75/212 (35%), Gaps = 14/212 (6%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V    G   +   ++    A+ + D  +  + +   +    R    DG   
Sbjct: 94  CTRRCPFCDV--AHGRPNAPDANEPEKLAQTIKDMALRYVVITSVD----RDDLRDGGAQ 147

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAH-GDLDVLMPYLHLPVQSGSDRILK 304
            F+D + ++ E    +++       R   D  ++        +  +    V     R+ +
Sbjct: 148 HFADCISAIREKSPSIKIETLVPDFRGRMDRALEILTATPPDVFNHNLENV----PRVYR 203

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
            +          +++++ +   P+I   S  +VG  GET+++    M  + + G      
Sbjct: 204 QVRPGANYEWSLKLLEKFKEAHPNIPTKSGLMVGL-GETNEEIIEVMRDLRRHGVTMLTL 262

Query: 365 FKYSP--RLGTPGSNMLEQVDENVKAERLLCL 394
            +Y    R   P    +   + +   E  + +
Sbjct: 263 GQYLQPSRHHLPVKRYVSPAEFDEMKEEAMAM 294


>gi|212640118|ref|YP_002316638.1| coproporphyrinogen III oxidase [Anoxybacillus flavithermus WK1]
 gi|212561598|gb|ACJ34653.1| Coproporphyrinogen III oxidase hemZ [Anoxybacillus flavithermus
           WK1]
          Length = 499

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 38/258 (14%), Positives = 87/258 (33%), Gaps = 18/258 (6%)

Query: 162 RLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY--TRGIEISRSLSQVVDEARKLID 219
           +L++V   Y+    V+ ++ I   C   C +C  P    +G + S  +   +      ++
Sbjct: 162 QLTVVPDLYDLSNEVSIYIGIPF-CPTKCAYCTFPAYAIQGKQGS--VDSFLFGLHYEME 218

Query: 220 NGVCEITLLGQNVNAWRGKG-------LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
                +      +      G        +     ++ +      ++ +  +      P  
Sbjct: 219 QIGKFLKERNIPITTIYYGGGTPTSITAEEMDALYAHMYRVFPNVERVREITVEAGRPDT 278

Query: 273 MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAIS 332
           ++   +      ++    + +  QS     L+++ R HT  E  +     R    +  I+
Sbjct: 279 ITPEKLAVLKKWNI--DRISINPQSYIQETLRAIGRHHTVEETIEKFHLARESGMN-NIN 335

Query: 333 SDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLL 392
            D I+G PGE    F  T+   +K+          S       S M +  ++   A+R  
Sbjct: 336 MDLIIGLPGEGVKQFDFTLAQTEKLMPESLTVHTLS---FKRASEMTKNKEKYKVADRDE 392

Query: 393 CLQKKLREQQVSFNDACV 410
             +   R ++ +     V
Sbjct: 393 IHEMMKRAERWTKEKGYV 410


>gi|153825912|ref|ZP_01978579.1| conserved hypothetical protein [Vibrio cholerae MZO-2]
 gi|149740410|gb|EDM54541.1| conserved hypothetical protein [Vibrio cholerae MZO-2]
          Length = 316

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/124 (24%), Positives = 50/124 (40%), Gaps = 12/124 (9%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +L L +Q+  D+ LK +NR H    Y +I  + R++   I + +  IVG PGE   +   
Sbjct: 145 WLELGLQTAHDQTLKRINRGHDFACYAEITAKARAL--GIKVCTHLIVGLPGEGRTENLT 202

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDAC 409
           T+  V ++G             G+  +          KA R   L    ++Q VS     
Sbjct: 203 TLQQVLRVGTDGIKLHGLHIVEGSTMA----------KAWRAGRLTVLDQDQYVSIACEM 252

Query: 410 VGQI 413
           +   
Sbjct: 253 IRST 256


>gi|67921337|ref|ZP_00514856.1| Putative oxygen-independent coproporphyrinogen III oxidase
           [Crocosphaera watsonii WH 8501]
 gi|67857454|gb|EAM52694.1| Putative oxygen-independent coproporphyrinogen III oxidase
           [Crocosphaera watsonii WH 8501]
          Length = 417

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 41/203 (20%), Positives = 75/203 (36%), Gaps = 22/203 (10%)

Query: 175 GVTAFLTIQEGCDKFCTFCVVPYT-----RGIEISRSLSQVVDEARKLIDNGVCEITLLG 229
            V+A+L I   C + C +C  P +          S S+S+ V    + I         + 
Sbjct: 6   PVSAYLHIPF-CRRRCYYCDFPISVLGDKTNTNTSGSISEYVQFLCEEIK--------IT 56

Query: 230 QNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCL------IKAHGD 283
              N        G           L +I   +  ++      ++S  +      ++   D
Sbjct: 57  PTYNRPLKTVFFGGGTPSLLPPRYLDKILATLDQQFGICADAEISMEIDPGTFSLEQLSD 116

Query: 284 LDVL-MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGE 342
              L +    L +QS  D++L+   R H   +  Q ID I      I  S D I G P +
Sbjct: 117 YKTLGVNRFSLGIQSFDDKLLEKSGRFHRYKDIEQSIDFIYKTNI-INFSLDLISGLPYQ 175

Query: 343 TDDDFRATMDLVDKIGYAQAFSF 365
           T +D++++++   KI  +    +
Sbjct: 176 TLEDWKSSLEKAIKIQPSHISCY 198


>gi|300783739|ref|YP_003764030.1| lipoic acid synthetase [Amycolatopsis mediterranei U32]
 gi|299793253|gb|ADJ43628.1| lipoic acid synthetase [Amycolatopsis mediterranei U32]
          Length = 333

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 49/289 (16%), Positives = 97/289 (33%), Gaps = 30/289 (10%)

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQ-EGCDKFCTFCVVPYTRGIEISRSLSQVVD 212
           ++V ++    +I +   +R+    A   I  + C + C FC +   +  E+ R+  +   
Sbjct: 52  HTVCEEAGCPNIYECWEDRE----ATFLIGGDQCTRRCDFCQIDTGKPAELDRT--EPRK 105

Query: 213 EARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
            A  +   G+   T+ G      R    DG    +++ +  +  +     +         
Sbjct: 106 VAESVQAMGLRYSTVTGV----ARDDLPDGGAWLYAETVRQIHALNPGTGVELLIPDFNA 161

Query: 273 MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAIS 332
               L +  G    ++ +    V     RI K +          ++I   R     +   
Sbjct: 162 EPAQLAEVFGSRPEVLAHNVETV----PRIFKRIRPGFRYARSLEVITAAREA--GLVTK 215

Query: 333 SDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLL 392
           S+ I+G  GET D+    M  +   G       +Y      P +     VD  VK E  +
Sbjct: 216 SNLILGM-GETPDEVAPAMRDLVDAGCEILTITQYLR----PSARHHP-VDRWVKPEEFV 269

Query: 393 CLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
              K    + + F     G     L+ +     G+L  ++   +   L 
Sbjct: 270 EHSK--AAEAMGFAGVMAGP----LV-RSSYRAGRLYAQTKGYRGEELP 311


>gi|281180930|dbj|BAI57260.1| coproporphyrinogen III oxidase [Escherichia coli SE15]
          Length = 457

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 44/269 (16%), Positives = 91/269 (33%), Gaps = 30/269 (11%)

Query: 157 EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS-------LSQ 209
           ED  E+  +       +R ++ ++ I   C K C FC        +  ++         +
Sbjct: 34  EDFGEQAFLQAVARYPERPLSLYVHIPF-CHKLCYFCGCNKIVTRQQHKADQYLDALEQE 92

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE-----IKGLVRLR 264
           +V  A       V ++   G       G      K   S L+  L E         + + 
Sbjct: 93  IVHRAPLFAGRKVSQLHWGG-------GTPTYLNKAQISRLMKLLRENFQFNADAEISIE 145

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
                PR++   ++            L + VQ  +  + + +NR         +++  R 
Sbjct: 146 V---DPREIELDVLDHLRAEG--FNRLSMGVQDFNKEVQRLVNREQDEEFIFALLNHARE 200

Query: 325 VRPDIAISS-DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQV 382
           +      ++ D I G P +T + F  T+  V ++   +   F Y+       +   ++  
Sbjct: 201 I--GFTSTNIDLIYGLPKQTPESFAFTLKRVAELNPDRLSVFNYAHLPTIFAAQRKIKDA 258

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVG 411
           D     ++L  LQ+ +     S     +G
Sbjct: 259 DLPSPQQKLDILQETIAFLTQSGYQ-FIG 286


>gi|258513537|ref|YP_003189759.1| Radical SAM domain-containing protein [Desulfotomaculum acetoxidans
           DSM 771]
 gi|257777242|gb|ACV61136.1| Radical SAM domain protein [Desulfotomaculum acetoxidans DSM 771]
          Length = 349

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 37/248 (14%), Positives = 78/248 (31%), Gaps = 24/248 (9%)

Query: 136 LPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
             E+L     G +     +++ D   +  + D  + R       +     C + C +C +
Sbjct: 22  HREILALLAAGPKEQQELFALADAVRKRYVGDAVHLR-----GIIEFSNYCCRQCHYCGL 76

Query: 196 PYTRGIEISRSL--SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS 253
                      L    ++   R+ +  G+  + L         G+           ++  
Sbjct: 77  RSANKDVKRYRLGEEDILLAVRRAVKVGLKTVVLQS-------GEDRFYSLEQLVRIVRL 129

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA- 312
           + +  G+              + L +A  D        +L  Q  SD  L    R  T  
Sbjct: 130 IKQSTGMAVTLSLGERSYSDYERLREAGADR-------YLLKQETSDEGLFVRLRPKTTL 182

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
               Q +  ++ +     I S  +VG PG++       ++L+ ++    A    +     
Sbjct: 183 AGRVQCLKWLKEL--GFEIGSGNMVGLPGQSTGTLARDLELMRELDVDMAGIGPFIAHPQ 240

Query: 373 TPGSNMLE 380
           TP + M  
Sbjct: 241 TPLAGMPG 248


>gi|312621610|ref|YP_004023223.1| Radical SAM domain-containing protein [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312202077|gb|ADQ45404.1| Radical SAM domain protein [Caldicellulosiruptor kronotskyensis
           2002]
          Length = 613

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 44/247 (17%), Positives = 93/247 (37%), Gaps = 31/247 (12%)

Query: 143 ARFGKRVV-DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           AR  KR+V D D S         +++  ++R       L I  GC + C FC        
Sbjct: 230 ARVKKRIVKDLDTSYFPTKMITPLIEVVHDR-----ITLEIFRGCARGCRFCQAGIIYRP 284

Query: 202 EISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
              R   +V+  A++L++N G  EI+L+  + + +             +L   + +    
Sbjct: 285 VRFRKAEKVLQYAKELVENCGCNEISLVSLSTSDY---------PNIDELAREILKFAED 335

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLM-PYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
            ++  +    R  +  L     +++ +  P L    ++G+ R+   +N+     +    +
Sbjct: 336 KKVNISLPSLRLDTTSL-DLLKEVEKVRKPTLTFAPEAGTQRLRDVINKNIKEEDIYSTV 394

Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATM-------DLVDKIGYAQ-----AFSFKY 367
                      I   F++G P E D+D            ++  ++G+ +       +  +
Sbjct: 395 RLAFERGFQ-NIKLYFMLGLPLEKDEDVMGIYTIAKNIREIYKELGFKKRIRITVSTSFF 453

Query: 368 SPRLGTP 374
            P+  TP
Sbjct: 454 VPKPHTP 460


>gi|307266438|ref|ZP_07547974.1| oxygen-independent coproporphyrinogen III oxidase
           [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306918546|gb|EFN48784.1| oxygen-independent coproporphyrinogen III oxidase
           [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 375

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/211 (16%), Positives = 72/211 (34%), Gaps = 20/211 (9%)

Query: 186 CDKFCTFCVVPYTRGI--EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
           C + C +C      G        +  ++ E                 NV +    G    
Sbjct: 13  CKRKCYYCDFNSYAGYDYLFDDYIRALLMEIESNSTKDY--------NVVSVYIGGGTPN 64

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHG---DLDVLMPYLHLPVQSGSD 300
               S +   L  +    ++        +M+  LI         D  +  + + +Q+  +
Sbjct: 65  LLPPSYIEKILKSVFKNYKILDGCEITIEMNPGLITEEKLKIYKDNGINRVSIGLQAFQN 124

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
           R+LK + R HT  ++ +  + ++    +I I  D +   P +T  +++ T+  V K+   
Sbjct: 125 RLLKYIGRIHTIEDFFENYELVKKFFGNINI--DLMYALPTQTFKEWQETLKEVVKLQPT 182

Query: 361 QAFSFKYSPRLGTPGSNMLEQ-----VDENV 386
              ++       T    + E+     VDE  
Sbjct: 183 HVSTYSLILEPNTSFYRLYEKGQLPIVDEEE 213


>gi|238758041|ref|ZP_04619222.1| Lipoyl synthase [Yersinia aldovae ATCC 35236]
 gi|238703795|gb|EEP96331.1| Lipoyl synthase [Yersinia aldovae ATCC 35236]
          Length = 321

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/182 (17%), Positives = 65/182 (35%), Gaps = 10/182 (5%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V    G   +   ++    A+ + D G+  + +   +    R    DG   
Sbjct: 94  CTRRCPFCDV--AHGRPTTPDANEPQKLAQTIQDMGLRYVVITSVD----RDDLRDGGAQ 147

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
            F+D + ++      +++       R   D  ++         P +         R+ + 
Sbjct: 148 HFADCIAAIRAKNPTIKIETLVPDFRGRMDRALEILTVTP---PDVFNHNLENVPRVYRQ 204

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           +          ++++R +   PDI   S  +VG  GET+ +    M  + + G       
Sbjct: 205 VRPGANYEWSLKLLERFKEAHPDIPTKSGLMVGL-GETNAEIVEVMHDLRRHGVTMLTLG 263

Query: 366 KY 367
           +Y
Sbjct: 264 QY 265


>gi|288573909|ref|ZP_06392266.1| Radical SAM domain protein [Dethiosulfovibrio peptidovorans DSM
           11002]
 gi|288569650|gb|EFC91207.1| Radical SAM domain protein [Dethiosulfovibrio peptidovorans DSM
           11002]
          Length = 328

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 38/223 (17%), Positives = 71/223 (31%), Gaps = 17/223 (7%)

Query: 176 VTAFLTIQEGCDKFCTFC--VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVN 233
           +   L     C + C +C       R    S    +++         G+    L G    
Sbjct: 28  IRGLLEFTNRCRQNCLYCGLRRDNRRVRRYSLDEEEILASVDLGYQTGIRTFVLQGGEDP 87

Query: 234 AWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHL 293
           AW          + S L  ++  IKG       T     M     +A            L
Sbjct: 88  AW----------SASRLCRTVEVIKGRAPEAAVTLSCGIMEREDYRALASAGT--DRYLL 135

Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
             ++    + + +    +  E  + +  +R     I + S F+VG PGET+   +  + L
Sbjct: 136 RFETCDGELHRRLRDGVSLSERLKALIDLREA--GIELGSGFMVGLPGETEKISQGNLAL 193

Query: 354 VDKIGYAQAFSFKYSPRLGTPGSNML-EQVDENVKAERLLCLQ 395
              +         +     TP ++     ++E V+   +L L 
Sbjct: 194 CRDLDLDMVGIGPFIANPETPLAHCPSGSMEETVRLTAMLRLM 236


>gi|261408930|ref|YP_003245171.1| hypothetical protein GYMC10_5153 [Paenibacillus sp. Y412MC10]
 gi|329922241|ref|ZP_08277943.1| radical SAM protein, TIGR01212 family [Paenibacillus sp. HGF5]
 gi|261285393|gb|ACX67364.1| conserved hypothetical protein [Paenibacillus sp. Y412MC10]
 gi|328942278|gb|EGG38548.1| radical SAM protein, TIGR01212 family [Paenibacillus sp. HGF5]
          Length = 317

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 68/198 (34%), Gaps = 14/198 (7%)

Query: 181 TIQEGCDKFCTFCVVPYTRGIEISRSLSQVV---DEARKLIDNGVCEITLLGQNVNAWRG 237
           TI +G    CTFC      G    R    +V   +  R            +G        
Sbjct: 49  TIAKG---GCTFCSA-RGSGDFAGRRRDDLVTQFNTIRDRQHQKWPNAKYIG---YFQAY 101

Query: 238 KGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL-DVLMPYLHLPVQ 296
                      +    + +  G+V L    + P  + D +++   +L +    ++ + +Q
Sbjct: 102 TNTYAPVEELREYYEVILQQPGVVGLSI-ATRPDCLPDDVVEYLAELNERTYLWVEMGLQ 160

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
           +  D   + +NR H    Y + ++++R    +I + +  I G P E  D   AT   V K
Sbjct: 161 TIHDSTSELINRAHDTECYLEAVEKLRK--HNIRVCTHIIYGLPQEDHDMMLATGRAVSK 218

Query: 357 IGYAQAFSFKYSPRLGTP 374
           +               TP
Sbjct: 219 MDVQGIKIHLLHLMRKTP 236


>gi|170757805|ref|YP_001782595.1| coproporphyrinogen III oxidase [Clostridium botulinum B1 str. Okra]
 gi|169123017|gb|ACA46853.1| oxygen-independent coproporphyrinogen III oxidase [Clostridium
           botulinum B1 str. Okra]
          Length = 380

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 35/201 (17%), Positives = 77/201 (38%), Gaps = 18/201 (8%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C++C        E    +  V   ++++++N   +I      +    G        
Sbjct: 19  CMQKCSYCDFTSYSKKE-DLMMEYVKALSKEIVNNTKNKIIKT---IFIGGGTPTYLSLE 74

Query: 246 TFSDLLYSLSEIKGLVRLRYTTS----HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
             + L  +L  I     + +T         +    L+K+ G     +  L + +QS  + 
Sbjct: 75  ALNILKNTLKTIDKKENIEFTVEGNPGTFTEKKLKLLKSMG-----VNRLSIGLQSSKNS 129

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
           +LK++ R H+  ++       R    +  I+ D +   P ++ DD++ T+  +  +G + 
Sbjct: 130 LLKTLGRIHSFEDFVHSFKMARKEGFN-NINVDLMFALPNQSLDDWKETL--LKVVGLSP 186

Query: 362 AFSFKYS--PRLGTPGSNMLE 380
                YS     GT   N+ +
Sbjct: 187 EHLSCYSLIIEEGTNFYNLYK 207


>gi|168183634|ref|ZP_02618298.1| radical SAM protein, TIGR01212 family [Clostridium botulinum Bf]
 gi|237797015|ref|YP_002864567.1| radical SAM protein [Clostridium botulinum Ba4 str. 657]
 gi|182673166|gb|EDT85127.1| radical SAM protein, TIGR01212 family [Clostridium botulinum Bf]
 gi|229264000|gb|ACQ55033.1| radical SAM protein, TIGR01212 family [Clostridium botulinum Ba4
           str. 657]
          Length = 310

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/199 (15%), Positives = 65/199 (32%), Gaps = 15/199 (7%)

Query: 188 KFCTFCVVPYT------RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD 241
             C +C    +      R  +I +    +    ++   +            N +    + 
Sbjct: 46  GGCIYCSERGSGDFAGDRNFKIHKQFEDIKKIMKEKWSSDKYIAYFQA-YTNTYAPVNIL 104

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
            EK   +     +  +    R         ++ + L         +  ++ L +Q+ +D 
Sbjct: 105 REKYEEAISEEGVVALAIATRPDCLDQDVLNLIEEL------SKKIYIWVELGLQTVNDE 158

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
             K +NR +    + + +  +R    DI + S  I G PGET +D   T+  + K+    
Sbjct: 159 TAKIINRGYKLNVFEKAVKDLRERNIDIVVHS--IFGLPGETKEDMIGTVKYISKLDIQG 216

Query: 362 AFSFKYSPRLGTPGSNMLE 380
                      TP   + E
Sbjct: 217 VKFHLLHLLKDTPLVKLYE 235


>gi|323485445|ref|ZP_08090793.1| hypothetical protein HMPREF9474_02544 [Clostridium symbiosum
           WAL-14163]
 gi|323401308|gb|EGA93658.1| hypothetical protein HMPREF9474_02544 [Clostridium symbiosum
           WAL-14163]
          Length = 365

 Score = 55.0 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/194 (13%), Positives = 59/194 (30%), Gaps = 21/194 (10%)

Query: 186 CDKFCTFCVVPYTR-GIEISR-SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
           C   C +C +       +  R +  +++         G     L G       G+     
Sbjct: 82  CRNNCYYCGIRRGNQNAQRYRLTADEILSCCENGYSLGFRTFVLQG-------GEDPAMT 134

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSD-CLIKAHGDLDVLMPYLHLPVQSG--SD 300
               +D++  + +      +  +     + +  CL  A  D  +L          G    
Sbjct: 135 DGWVADVIRRIKKEFPDCAVTLSLGEKSEAAYQCLFDAGADRYLLRHETADADHYGKLHP 194

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
             L   +R        + +  ++ +         F+VG PG+T +     M  + ++   
Sbjct: 195 DGLSLAHR-------MECLRTLKRI--GFQTGCGFMVGSPGQTPECLAKDMAFIRELNPQ 245

Query: 361 QAFSFKYSPRLGTP 374
                 + P+  TP
Sbjct: 246 MVGIGPFIPQHDTP 259


>gi|254456776|ref|ZP_05070204.1| hypothetical protein CBGD1_470 [Campylobacterales bacterium GD 1]
 gi|207085568|gb|EDZ62852.1| hypothetical protein CBGD1_470 [Campylobacterales bacterium GD 1]
          Length = 499

 Score = 55.0 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 43/271 (15%), Positives = 85/271 (31%), Gaps = 16/271 (5%)

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             ++ L +   K      V++ G   +   E         + ++  +      EL     
Sbjct: 68  REVQELLHIIKKISPQTKVILGG--PEVTHEPFRVNFDEADFIIQGEGDIAFYELCRDII 125

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTA---FLTIQEGCDKFCTFCVVPYTRGI 201
               + +    +     +   +   Y     +     ++ +  GC   C FC+       
Sbjct: 126 NDTPIQNKIIKMALPSLKEIALPYEYYTDDDIKNRYLYVEVSRGCPFECEFCL-SSMDEK 184

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
             +  L  V+ E  KL   G      + +  N            T + +L    E     
Sbjct: 185 VRAFDLDAVLIEFEKLWQRGARNFKFVDRTFNLNM--------LTANKILDFFLEKDEQY 236

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
              +    P      + +           L + +Q+ +  I K+++R+    + ++ I R
Sbjct: 237 FAHFEVI-PDHFPSSIKEKIKQFSEGALQLEIGIQTLNPEIAKNISRQLKLDKIKENI-R 294

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMD 352
                    I  D IVG PGE+ D F A +D
Sbjct: 295 FLENETHAHIHLDLIVGLPGESQDSFGANLD 325


>gi|146282193|ref|YP_001172346.1| coproporphyrinogen III oxidase [Pseudomonas stutzeri A1501]
 gi|145570398|gb|ABP79504.1| oxygen-independent coproporphyrinogen III oxidase [Pseudomonas
           stutzeri A1501]
          Length = 460

 Score = 55.0 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 36/227 (15%), Positives = 80/227 (35%), Gaps = 29/227 (12%)

Query: 160 FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC----VVPYTRGIEISRSLSQVVDEAR 215
           F+ L  +       R ++ ++ +   C   C +C    ++   RG             A+
Sbjct: 38  FDLLHALRSSRQASRPLSLYVHLPF-CANVCYYCGCNKIITKDRGR------------AQ 84

Query: 216 KLIDNGVCEITLLGQNVNAWR--GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPR-- 271
             ++    EI L+  ++   +   +   G           L  +   +R  +        
Sbjct: 85  PYLERLEKEIELISCHLGKDQLVEQLHFGGGTPTFLSHDELRRLMKHLRQHFNLQDDDHG 144

Query: 272 DMSDCLIKAHGDLDVL-------MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           D S  +     D   +          + + VQ     + +++NR  T  + R II+  R+
Sbjct: 145 DFSIEVDPREADWPTIGLLRELGFNRISIGVQDLDPEVQRAINRMQTLEQTRTIIEAART 204

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
           ++   +++ D I G P +T   F  T++ +  +   +   F Y+   
Sbjct: 205 LQYR-SLNIDLIYGLPLQTPARFAKTVEAIIDLQPDRLSLFNYAHLP 250


>gi|88807952|ref|ZP_01123463.1| hypothetical protein WH7805_07316 [Synechococcus sp. WH 7805]
 gi|88787991|gb|EAR19147.1| hypothetical protein WH7805_07316 [Synechococcus sp. WH 7805]
          Length = 884

 Score = 55.0 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 41/255 (16%), Positives = 81/255 (31%), Gaps = 36/255 (14%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGK 238
           + I+ GC + C FC                V++     ++  G  + +LL          
Sbjct: 272 VEIRRGCTRGCRFCQPGMLTRPARDVEPEAVIEAVETGMERTGYSDFSLLS-----LSCS 326

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
                     +L   L+     V L+  +       + +    G        L    ++G
Sbjct: 327 DYLALPAVGVELRNRLA--DRNVTLQLPSQRVDRFDEDIAHILGGARQA--GLTFAPEAG 382

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPD--IAISSDFIVGFPGETDDD---FRATMDL 353
           + R+   +N+  T      ++  IR+   +    +   F++G PGETD D      T  +
Sbjct: 383 TQRLRDIVNKGLTDE---DLLQGIRTAMQNGYRKVKLYFMIGLPGETDADVLGIAETCRM 439

Query: 354 VDKIGYA------QAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQ------ 401
           + +                ++P+  TP       V       R   L++  R        
Sbjct: 440 LQERCRDLGRLSLNITISNFTPKPHTPFQ--WHSVSTEEFLRRQQLLREAGRRLRGVRFN 497

Query: 402 ----QVSFNDACVGQ 412
               ++S  +  VG+
Sbjct: 498 FTDVRLSAMEDFVGR 512


>gi|116748286|ref|YP_844973.1| biotin synthase [Syntrophobacter fumaroxidans MPOB]
 gi|116697350|gb|ABK16538.1| biotin synthase [Syntrophobacter fumaroxidans MPOB]
          Length = 344

 Score = 55.0 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/236 (11%), Positives = 76/236 (32%), Gaps = 23/236 (9%)

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKR------GVTAFLTIQEGCDKFCTFCVVPYTRG 200
           +R++D     ++   R+ ++     R+R       +   +     C + C +C +  +  
Sbjct: 5   RRIIDLLEEKDEATLRILMLRADAVRRRFLGDAIHLRGLIEFSNHCRRDCLYCGLRRSNK 64

Query: 201 IEISRSLS--QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258
             +   ++  ++  +A +  + G   + L         G+           L+  +    
Sbjct: 65  NLVRYRMAPREIFAQAAEAANLGFRTVVLQS-------GEDPAYTIRALCSLVREIKSEL 117

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
            L          R+    L +A  D         L  ++    + + +          + 
Sbjct: 118 SLAVTLCVGERTREDFLRLKQAGVDR------YLLRFETSDPCLFRILKPDSDYERRFRC 171

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
           ++ ++++     + S  IVG PG+T +     +    ++         +     TP
Sbjct: 172 LEWLKAI--GFQVGSGNIVGLPGQTMESLAEDILKFREMRLDMVGLGPFIAHPDTP 225


>gi|298492589|ref|YP_003722766.1| oxygen-independent coproporphyrinogen III oxidase ['Nostoc azollae'
           0708]
 gi|298234507|gb|ADI65643.1| oxygen-independent coproporphyrinogen III oxidase ['Nostoc azollae'
           0708]
          Length = 401

 Score = 55.0 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 33/207 (15%), Positives = 65/207 (31%), Gaps = 14/207 (6%)

Query: 186 CDKFCTFCVVP-------YTRGIEIS--RSLSQVVDEARKLIDNGVCEITLLGQNVNAWR 236
           C + C +C  P       Y      S  ++   +      L       +         + 
Sbjct: 21  CRRRCFYCDFPVFVVGDTYGEPSYRSQGKTSGTISQYVDALCHEISISLAFSQPVTTIFF 80

Query: 237 GKGLDGEKCT--FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP 294
           G G      T     +L +L +  G+      +      +  L +  G     +  + L 
Sbjct: 81  GGGTPSLLSTEQLQCILTALEKRFGIAAGVEISMEMDPGTYDLAQIAGYCSTGVNRVSLG 140

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSV-RPDIAISSDFIVGFPGETDDDFRATMDL 353
           VQ+  D +L    R H+  +    ID I  V  P  ++  D I G P ++   +  ++  
Sbjct: 141 VQAFQDELLTVAGRSHSVNDIFAAIDLINQVEIPQFSL--DLISGLPHQSLVQWEDSLTK 198

Query: 354 VDKIGYAQAFSFKYSPRLGTPGSNMLE 380
             ++       +  +   GT      +
Sbjct: 199 AVEVAPTHISIYDLTIEPGTAFGRYYK 225


>gi|238762887|ref|ZP_04623855.1| Lipoyl synthase [Yersinia kristensenii ATCC 33638]
 gi|238698898|gb|EEP91647.1| Lipoyl synthase [Yersinia kristensenii ATCC 33638]
          Length = 315

 Score = 55.0 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 43/257 (16%), Positives = 86/257 (33%), Gaps = 17/257 (6%)

Query: 118 LRRSPIVNVVVGPQTYYRLPELLERAR-------FGKRVVDTDYSVEDKFERLSIVDGGY 170
           +   PI  VV   Q   R PE ++           G +       +    E  S  +   
Sbjct: 13  MALIPIKTVVTERQELLRKPEWMKIKLPADSSRIQGIKAAMRKNGLHSVCEEASCPNLSE 72

Query: 171 NRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQ 230
               G   F+ +   C + C FC V    G  ++   ++    A+ + D G+  + +   
Sbjct: 73  CFNHGTATFMILGAICTRRCPFCDV--AHGRPVTPDANEPEKLAQTIKDMGLRYVVITSV 130

Query: 231 NVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY 290
           +    R    DG    F+D + ++      +++       R   D  +          P 
Sbjct: 131 D----RDDLRDGGAQHFADCISAIRAKNPTIKIETLVPDFRGRMDRALDILTVTP---PD 183

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
           +         R+ + +          ++++R +   P+I   S  +VG  GET+ +    
Sbjct: 184 VFNHNLENVPRVYRQVRPGANYEWSLKLLERFKEAHPEIPTKSGLMVGL-GETNAEIVEV 242

Query: 351 MDLVDKIGYAQAFSFKY 367
           M  + + G       +Y
Sbjct: 243 MHDLRRHGVTMLTLGQY 259


>gi|268317743|ref|YP_003291462.1| lipoic acid synthetase [Rhodothermus marinus DSM 4252]
 gi|262335277|gb|ACY49074.1| lipoic acid synthetase [Rhodothermus marinus DSM 4252]
          Length = 328

 Score = 55.0 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 41/260 (15%), Positives = 85/260 (32%), Gaps = 19/260 (7%)

Query: 114 GEEILRRSPIVNVVVGPQTYYRLPELLERAR----FGKRVVDTD--YSVEDKFERLSIVD 167
           G+      P+V+         R P  L          +RV+D    + +    +     +
Sbjct: 32  GDGGFFELPVVDPPPVTNERGRRPAWLRAKLPYGPTYRRVLDIVETHRLHTVCQSARCPN 91

Query: 168 GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITL 227
            G     G   F+ +   C + C FC V   R   +     +    A  +   G+    +
Sbjct: 92  MGECWTAGTATFMILGNVCTRSCGFCAVKTGRPDPL--DWDEPRRVAEAVRLMGIRHAVV 149

Query: 228 LGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL 287
              +    R    DG    F++ +  +  +   V +       +   D L     +   +
Sbjct: 150 TSVD----RDDLEDGGAALFAETIRQIRALNPGVTVEVLIPDFQGNWDALQLVLDERPDI 205

Query: 288 MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDF 347
           + +    V     R+ + +  +       +++   R+ +  +   S  +VG  GET ++ 
Sbjct: 206 LNHNVETV----PRLYRRVRPQARYERSLELL--WRAKQAGLRTKSGIMVGL-GETKEEV 258

Query: 348 RATMDLVDKIGYAQAFSFKY 367
            A MD   +I        +Y
Sbjct: 259 LAVMDDFARIRLDIMTIGQY 278


>gi|297190490|ref|ZP_06907888.1| coproporphyrinogen III oxidase [Streptomyces pristinaespiralis ATCC
           25486]
 gi|197717797|gb|EDY61705.1| coproporphyrinogen III oxidase [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 415

 Score = 55.0 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 52/248 (20%), Positives = 85/248 (34%), Gaps = 34/248 (13%)

Query: 186 CDKFCTFC--VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
           C   C +C   V  ++G  I+R +  +  E R+  D G                 G  G 
Sbjct: 16  CTAICDYCGFSVQRSKGAHIARYMEALSTEIRRYADAGRLN--------GHRFVCGHFGG 67

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY-------LHLPVQ 296
               +     L  IK L+      S   +++  +       D    Y       + + VQ
Sbjct: 68  GTPSAIDAEDLISIKRLIDSCCDVSSDAEVTIEVNPISFTSDKAETYAKGGINRISIGVQ 127

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
           S  D++L+++ R H A +    I+ +     D   S D I G PG+T D  R  +     
Sbjct: 128 SFDDQVLRTIGRPHRAGDVEDAIEVVHQAGFD-NFSLDVIYGVPGQTVDCLREDLTRAAA 186

Query: 357 IGYAQAFSFKYSPRLGTP------GSNMLEQVDE-------NVKAERLLCLQKKLREQQV 403
            G +    F+      T          +  ++DE       +V  E    L     E+  
Sbjct: 187 TGASHLSCFRLEIIPFTALKLREGAGLLPSRLDESQLNEMDDVVRE---VLLGLGYEEYG 243

Query: 404 SFNDACVG 411
           +FN A  G
Sbjct: 244 AFNFAKHG 251


>gi|153814298|ref|ZP_01966966.1| hypothetical protein RUMTOR_00507 [Ruminococcus torques ATCC 27756]
 gi|317500016|ref|ZP_07958251.1| oxygen-independent coproporphyrinogen III oxidase [Lachnospiraceae
           bacterium 8_1_57FAA]
 gi|331087754|ref|ZP_08336680.1| oxygen-independent coproporphyrinogen III oxidase [Lachnospiraceae
           bacterium 3_1_46FAA]
 gi|145848694|gb|EDK25612.1| hypothetical protein RUMTOR_00507 [Ruminococcus torques ATCC 27756]
 gi|316898501|gb|EFV20537.1| oxygen-independent coproporphyrinogen III oxidase [Lachnospiraceae
           bacterium 8_1_57FAA]
 gi|330409735|gb|EGG89171.1| oxygen-independent coproporphyrinogen III oxidase [Lachnospiraceae
           bacterium 3_1_46FAA]
          Length = 423

 Score = 55.0 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 32/197 (16%), Positives = 70/197 (35%), Gaps = 20/197 (10%)

Query: 186 CDKFCTFCVVPYTRGI--EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
           C K C +C          E+S  +  + +E +   +    +  +            L G 
Sbjct: 14  CVKKCAYCDFLSFSAKQEEVSAYVEALAEEIKGKKEQ-FSDYCVTTI--------FLGGG 64

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL-------MPYLHLPVQ 296
             +  + +Y+ + I   +R  +  +   +++  +       + +       +  L + +Q
Sbjct: 65  TPSILEGVYT-ASIFRALRESFDIAENAEITMEVNPGTVSEEKINMWKTCGVNRLSIGLQ 123

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
           S  D  LK + R HT  E+      +R       ++ D I   PG+T   +  T+  V +
Sbjct: 124 SVDDGELKMLGRIHTYDEFLTTWKMVRKAGFH-NVNIDLISAIPGQTKKSWETTLRTVAQ 182

Query: 357 IGYAQAFSFKYSPRLGT 373
           +      ++      GT
Sbjct: 183 LQPEHISAYSLIIEEGT 199


>gi|90581068|ref|ZP_01236868.1| coproporphyrinogen III oxidase [Vibrio angustum S14]
 gi|90437764|gb|EAS62955.1| coproporphyrinogen III oxidase [Vibrio angustum S14]
          Length = 457

 Score = 55.0 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 43/237 (18%), Positives = 83/237 (35%), Gaps = 23/237 (9%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C K C +C           +     +D+  + I       TLLG    +    G  G   
Sbjct: 62  CHKLCYYCGCNKIITRHQHK-ADDYLDKLEQEIKQ---RATLLGDRQVSQLHWG--GGTP 115

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL-------MPYLHLPVQSG 298
           TF      +S +   +R  +      ++S  +     +LD+L          L + VQ  
Sbjct: 116 TF-LTAAQISRLMNSLRAAFNFDDDAEISIEVDPREIELDILDHLRSEGFNRLSIGVQDF 174

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS-DFIVGFPGETDDDFRATMDLVDKI 357
           +  + K +NR         +++R R +      ++ D I G P +  + F  T++ V  +
Sbjct: 175 NKDVQKLVNREQDETFIFAMVERAREL--GFRSTNLDLIYGLPLQNREMFAKTLEQVLAM 232

Query: 358 GYAQAFSFKYSPRLGTPGSNMLEQVDENV---KAERLLCLQKKLREQQVSFNDACVG 411
              +   F Y+       +    ++ E +     E+L  LQ  +     +     +G
Sbjct: 233 NPGRLSVFNYAHMPKLFAAQR--KISEELLPSAKEKLGILQDTIATLTAAGYQ-FIG 286


>gi|320533832|ref|ZP_08034418.1| lipoyl synthase [Actinomyces sp. oral taxon 171 str. F0337]
 gi|320133952|gb|EFW26314.1| lipoyl synthase [Actinomyces sp. oral taxon 171 str. F0337]
          Length = 343

 Score = 55.0 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 45/249 (18%), Positives = 80/249 (32%), Gaps = 25/249 (10%)

Query: 184 EGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
           E C + C FC +   R  E    + +    A  + +  +   T+ G      R    DG 
Sbjct: 81  EMCTRRCDFCDIATGRPTE--YDVDEPRRVAVSIKEMELRYATVTGV----ARDDRPDGG 134

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
              +++    + E+     +       R   + L         ++ +    V     RI 
Sbjct: 135 AWLYAETARQVHELSPGTGVELLIPDFRGNPEALEDVFSSRPEVLGHNLETV----PRIF 190

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           K +    +      +I         +   S+ I+G  GET D+  A M  + +       
Sbjct: 191 KRIRPAFSYQGSLDVITAAAEA--GLVTKSNLILGM-GETRDEIEAAMAALVEARCDILT 247

Query: 364 SFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK 423
             +Y  R     S +   VD  VK +  + L +   E    F     G ++         
Sbjct: 248 ITQYL-RP----SKLHHPVDRWVKPQEFVDLSRLAEEI--GFAAVMSGPMVR-----SSY 295

Query: 424 EKGKLVGRS 432
             G L GR+
Sbjct: 296 RAGMLWGRA 304


>gi|260910078|ref|ZP_05916759.1| BchE/P-methylase [Prevotella sp. oral taxon 472 str. F0295]
 gi|260635790|gb|EEX53799.1| BchE/P-methylase [Prevotella sp. oral taxon 472 str. F0295]
          Length = 456

 Score = 55.0 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 60/329 (18%), Positives = 110/329 (33%), Gaps = 31/329 (9%)

Query: 47  MFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVA 106
           +   Q  E+++  D  DL+ +                    R    +       + VV+ 
Sbjct: 49  VLLDQHVEKLDITDTPDLVCI------------QVYVTNAYRAYAIADSYRSRGVYVVMG 96

Query: 107 GCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIV 166
           G    A  EE    +  + +  G + + R       +   KR      S+ED        
Sbjct: 97  GLHITALPEEAALHADTIIIGPGEEAFPRFINDFRNSCAQKRYAAQWRSIEDIPP--VRR 154

Query: 167 DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEIT 226
           D     K  V   L +  GC   C FC          S   ++V    +++       + 
Sbjct: 155 DLIKRSKYFVPNSLVVSRGCPHHCDFCYKDAFYEGGKSFYTARVDAALKEIDALPGRHLY 214

Query: 227 LLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSH-PRDMSDCLIKAHGDLD 285
            L  ++         G K   ++L   +   KG+ R+  + +     +   LI+   +  
Sbjct: 215 FLDDHLL--------GSKRFAAELFEGM---KGMNRVFQSAATVQSILEGDLIEKAAEAG 263

Query: 286 VLMPYLHLPVQSGSDRILKSMNRRHT-AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETD 344
             M  + +  ++ S   LK+ N+      +Y   + R+ S+   I I+  F+ G   +  
Sbjct: 264 --MRSVFIGFETFSPENLKASNKCQNLQRDYSAAVKRLHSL--GIMINGSFVFGLDHDDA 319

Query: 345 DDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
           D FR T+D         A     +P  GT
Sbjct: 320 DVFRRTVDWGVDNAITTATYHILTPYPGT 348


>gi|213420177|ref|ZP_03353243.1| hypothetical protein Salmonentericaenterica_21435 [Salmonella
           enterica subsp. enterica serovar Typhi str. E01-6750]
          Length = 364

 Score = 55.0 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 39/225 (17%), Positives = 77/225 (34%), Gaps = 34/225 (15%)

Query: 182 IQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDN--GVCEIT--LLGQNVNAWR 236
           I  GC   C+FC +    G  I SRS   +++E   + D   G   +   L G   N + 
Sbjct: 1   IMRGCFGGCSFCSITEHEGRIIQSRSEDSIINEIEAIRDTVPGFTGVISDLGGPTANMYM 60

Query: 237 ----------------------GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMS 274
                                    +D +     +L     E+KG+ ++   +    D++
Sbjct: 61  LRCKSPRAEQTCRRLSCVYPDICPHMDTDHTPTINLYRRARELKGIKKILIASGVRYDIA 120

Query: 275 DCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRRH--TAYEYRQIIDRI-RSVRPDI 329
               +   +L    +  YL +  +   +  L  M +    +   ++++ D   +    + 
Sbjct: 121 VEDPRYIKELASHHVGGYLKIAPEHTEEGPLSKMMKPGMGSYDRFKELFDLYSKQAGKEQ 180

Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGY--AQAFSFKYSPRLG 372
            +   FI   PG  D+D       + +  +   Q  +F  SP   
Sbjct: 181 YLIPYFISAHPGTRDEDMVNLALWLKRHRFRLDQVQNFYPSPLAN 225


>gi|325068918|ref|ZP_08127591.1| lipoyl synthase [Actinomyces oris K20]
 gi|326773227|ref|ZP_08232510.1| lipoyl synthase [Actinomyces viscosus C505]
 gi|326636457|gb|EGE37360.1| lipoyl synthase [Actinomyces viscosus C505]
          Length = 343

 Score = 55.0 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 45/249 (18%), Positives = 80/249 (32%), Gaps = 25/249 (10%)

Query: 184 EGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
           E C + C FC +   R  E    + +    A  + +  +   T+ G      R    DG 
Sbjct: 81  EMCTRRCDFCDIATGRPTE--YDVDEPRRVAVSIKEMDLRYATVTGV----ARDDRPDGG 134

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
              +++    + E+     +       +   D L         ++ +    V     RI 
Sbjct: 135 AWLYAETARQVHELSPGTGVELLIPDFKGNPDALEDVFSSRPEVLGHNLETV----PRIF 190

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           K +    +      +I         +   S+ I+G  GET D+  A M  + +       
Sbjct: 191 KRIRPAFSYQGSLDVITAAAEA--GLVTKSNLILGM-GETRDEIEAAMAALVEARCDILT 247

Query: 364 SFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK 423
             +Y  R     S +   VD  VK +  + L +   E    F     G ++         
Sbjct: 248 ITQYL-RP----SKLHHPVDRWVKPQEFVDLSRLAEEI--GFAAVMSGPMVR-----SSY 295

Query: 424 EKGKLVGRS 432
             G L GR+
Sbjct: 296 RAGMLWGRA 304


>gi|325679300|ref|ZP_08158885.1| coproporphyrinogen dehydrogenase HemZ [Ruminococcus albus 8]
 gi|324108897|gb|EGC03128.1| coproporphyrinogen dehydrogenase HemZ [Ruminococcus albus 8]
          Length = 492

 Score = 55.0 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 32/209 (15%), Positives = 72/209 (34%), Gaps = 24/209 (11%)

Query: 173 KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNV 232
           K+  + +++I   C   C++C         IS++L        + ID    EI       
Sbjct: 166 KKSFSLYVSIPF-CPTRCSYCS-------FISQTLDSGRKLIPEYIDKMCREIRHTALIT 217

Query: 233 --------NAWRGKGLDGEKCT-----FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIK 279
                     + G G                +    ++ G+         P  +++  ++
Sbjct: 218 KRLGLKLETVYFGGGTPTSIEAEQLGALMKCIEHCFDMSGVKEYTVEAGRPDTITEAKLR 277

Query: 280 AHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGF 339
              +       + +  QS +  +L+++ R H+  ++    +  R       I++D I G 
Sbjct: 278 TIKE--NGCTRISINPQSLNPAVLEAIGRSHSVEQFYNSFELARK-IGFSCINTDVIAGL 334

Query: 340 PGETDDDFRATMDLVDKIGYAQAFSFKYS 368
           P +T + F  T+D + ++          S
Sbjct: 335 PNDTVESFDDTIDKLIELSPENYTVHTLS 363


>gi|218130037|ref|ZP_03458841.1| hypothetical protein BACEGG_01621 [Bacteroides eggerthii DSM 20697]
 gi|217987757|gb|EEC54084.1| hypothetical protein BACEGG_01621 [Bacteroides eggerthii DSM 20697]
          Length = 555

 Score = 55.0 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 53/325 (16%), Positives = 105/325 (32%), Gaps = 48/325 (14%)

Query: 42  LRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDL 101
             +  +     Y     +  A   + N         E++     R++ L         + 
Sbjct: 43  ENIGTIVEEA-YRHKPDILAATAWLFN--------HEQLLHITSRLKAL-------LPET 86

Query: 102 LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR--------VVDTD 153
            +++ G     + E  LR++P VN V   +     P  L      ++         +D+D
Sbjct: 87  CLILGGPEFLGDNEFFLRKNPFVNCVFRGEGEEAFPRWLSCWNHPEQWNTISGLCFLDSD 146

Query: 154 YSVEDKFERLS------IVDGGYNRKRGVTAFLTI--QEGCDKFCTFCVVPYTRGIEISR 205
               D            I             F+ +    GC   C FC V        + 
Sbjct: 147 AQYRDNGTARVLNFSGLIPPEKSRFFNWSKPFVQLETTRGCFNTCAFC-VSGGEKPIRTL 205

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           S+  +    + + ++G+  + +L +  N    +     K      L         +R   
Sbjct: 206 SIDSIRRRLQIIHEHGIKNVRVLDRTFNYNARR----AKELLQLFLEF-----PDIRFHL 256

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
              HP  +S+ L +    L   + +L   +QS  + +LK   R     +    ++ + S+
Sbjct: 257 E-IHPALLSEELKEELRRLPQGLLHLEAGIQSLREPVLKQSRRMGKLSDALAGLEFLCSL 315

Query: 326 RPDIAISSDFIVGFP----GETDDD 346
            P++   +D I G P     E  +D
Sbjct: 316 -PNMETHADLIAGLPLYHLNEIFED 339


>gi|172046103|sp|Q1D4N0|LIPA_MYXXD RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
          Length = 298

 Score = 55.0 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/193 (13%), Positives = 65/193 (33%), Gaps = 10/193 (5%)

Query: 175 GVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA 234
           G    + + E C + C FC V       +     + +  A+ + +  +  I +   N   
Sbjct: 52  GTATVMLMGEVCTRACRFCHVKVGAPPPL--DPMEPIHLAQAVKEMDLEYIVVTSVN--- 106

Query: 235 WRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP 294
            R    DG    F+  +  L        +       + +   L         ++ +    
Sbjct: 107 -RDDRPDGGASHFASAIRELRRESPRTIVEVLIPDFKGVEKDLTTVAEAKPHVVAHNVET 165

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           V+  +  +     + H +    ++++ +++    +   +  +VG  GETD +   T   +
Sbjct: 166 VERLTPTVRDRRAKYHQS---LRVLEYLKNRPEGLYTKTSVMVGL-GETDAELEQTFKDL 221

Query: 355 DKIGYAQAFSFKY 367
             +G       +Y
Sbjct: 222 RDVGVDVLTLGQY 234


>gi|327194737|gb|EGE61581.1| lipoate synthase protein [Rhizobium etli CNPAF512]
          Length = 350

 Score = 55.0 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 78/220 (35%), Gaps = 11/220 (5%)

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
           R +  ++ +    E     + G    +    F+ + E C + C FC V    G   +  +
Sbjct: 49  RAIVKEHKLVTVCEEAGCPNIGECWDKKHATFMIMGEICTRACAFCNV--ATGKPNALDM 106

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
           ++    A+ + + G+  + +   +    R    DG    F  +++++        +   T
Sbjct: 107 AEPESVAKAVKEMGLSHVVITSVD----RDDLEDGGAEHFEKVIWAIRAASPATTIEILT 162

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
                    L +       +  +    +++ +   L ++      +   +++ R++ + P
Sbjct: 163 PDFLKKPGALERVVAAKPDVFNH---NMETVAGNYL-TVRPGARYFHSIRLLQRVKELDP 218

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
            +   S  +VG  GE  ++    MD +           +Y
Sbjct: 219 TMFTKSGIMVGL-GEERNEVLQLMDDLRTADVDFLTIGQY 257


>gi|303231477|ref|ZP_07318207.1| radical SAM domain protein [Veillonella atypica ACS-049-V-Sch6]
 gi|302513820|gb|EFL55832.1| radical SAM domain protein [Veillonella atypica ACS-049-V-Sch6]
          Length = 581

 Score = 55.0 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 44/280 (15%), Positives = 90/280 (32%), Gaps = 40/280 (14%)

Query: 99  GDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYS--- 155
            D+ +V+ G       +E+L R P ++ +V  +       L+     G   +D       
Sbjct: 83  PDIKIVLGGPEVSFTADELLARCPNIDYIVQGEGEEAFHALVTALHLGNDGLDPVIPGVR 142

Query: 156 ----------------VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
                            +         +   +       +     GC   C +C+    +
Sbjct: 143 GRRDDSILGSTEAVEVRDLSTIPFPYTEADMDDLEHKIIYYESSRGCPFSCQYCL-SGNK 201

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
                    + + E +  ID+GV ++  + +  N                L+  + +   
Sbjct: 202 NTVRFFPQERTLKELQWFIDHGVKQVKFVDRTFNC--------APHHHRPLMEFMRDSDT 253

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
            +        P  M++       +       + + VQS   + L S+N R+  + Y Q  
Sbjct: 254 DMNFHLE-MEPELMTEWETNILCETPPGRIQIEVGVQSTHKKTLDSIN-RYNDWPYIQ-- 309

Query: 320 DRIRSVRPDI-----AISSDFIVGFPGETDDDFRATMDLV 354
              +S+RP I      +  D IVG P E  + F  + + +
Sbjct: 310 ---KSIRPIIQAGRTHVHMDLIVGLPHEDFNRFGQSFNDL 346


>gi|297243454|ref|ZP_06927386.1| coproporphyrinogen III oxidase-related Fe-S oxidoreductase
           [Gardnerella vaginalis AMD]
 gi|296888499|gb|EFH27239.1| coproporphyrinogen III oxidase-related Fe-S oxidoreductase
           [Gardnerella vaginalis AMD]
          Length = 440

 Score = 55.0 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 38/207 (18%), Positives = 74/207 (35%), Gaps = 17/207 (8%)

Query: 186 CDKFCTFC----VVPYTRGIEISRS-LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL 240
           C + C +C          G   SR   + V     +L+        +      +    G 
Sbjct: 30  CLRRCGYCDFNTYTARDLGEGASREGYADVAIREMQLVKKWQEYHGIFESKAQSVFFGGG 89

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDC-----LIKAHGDLDVLMPYLHLPV 295
                   DL+  L EI+ L  L+       + +        I+   +       +   +
Sbjct: 90  TPTVLKARDLVRILQEIRNLWGLKTGAEITTEANPDTADEKYIETLAEGG--FTRISFGM 147

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
           QS    +LK+++R HT     + ++   +    +  S D I G PGE+ DD+R ++++  
Sbjct: 148 QSAVPHVLKTLDRTHTPENVTRGVNAANAC--GLRSSVDLIYGAPGESLDDWRKSVEMAL 205

Query: 356 KIGYAQAFSFKYSPRLGTPGSNMLEQV 382
            +G     ++  +    T    M  Q+
Sbjct: 206 SLGVNHISAYALTVEPRT---KMGRQI 229


>gi|321314705|ref|YP_004206992.1| coproporphyrinogen III oxidase [Bacillus subtilis BSn5]
 gi|291483457|dbj|BAI84532.1| coproporphyrinogen III oxidase [Bacillus subtilis subsp. natto
           BEST195]
 gi|320020979|gb|ADV95965.1| coproporphyrinogen III oxidase [Bacillus subtilis BSn5]
          Length = 501

 Score = 55.0 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 41/218 (18%), Positives = 83/218 (38%), Gaps = 19/218 (8%)

Query: 162 RLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR-----GIEIS------RSLSQV 210
           +L+ V   Y  K  V+ ++ I   C   C +C  P        G   S        + ++
Sbjct: 157 QLAAVPDLYRVKDEVSIYIGIPF-CPTKCAYCTFPAYAIQGQAGRVGSFLWGLHYEMQKI 215

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270
            +  ++  D  V  I   G    +   + +D     + +++ S  ++K +  +      P
Sbjct: 216 GEWLKEH-DVKVTTIYFGGGTPTSITAEEMDL---LYEEMVRSFPDVKNIREITVEAGRP 271

Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330
             +++  +      D+    + +  QS  +  LK++ R HT  E  +     R    +  
Sbjct: 272 DTITEEKLAVLNKYDI--DRISINPQSYENETLKAIGRHHTVEETIEKYHLSRQHGMN-N 328

Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
           I+ D I+G PGE   +FR ++   +K+          S
Sbjct: 329 INMDLIIGLPGEGVKEFRHSLSETEKLMPESLTVHTLS 366


>gi|259046703|ref|ZP_05737104.1| coproporphyrinogen dehydrogenase [Granulicatella adiacens ATCC
           49175]
 gi|259036599|gb|EEW37854.1| coproporphyrinogen dehydrogenase [Granulicatella adiacens ATCC
           49175]
          Length = 385

 Score = 55.0 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 32/199 (16%), Positives = 67/199 (33%), Gaps = 8/199 (4%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQ-VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK 244
           C   C +C             + + +    R++   G        + +    G       
Sbjct: 13  CSHICYYCDFNKVFIEGQ--PVDEYIELLIREMELTGKKYKIEPLETLYVGGGTPSSLNP 70

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPR--DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
                LL  + +   L +    +      D +  L+         +  L + VQ+ ++ +
Sbjct: 71  QQMERLLDGIHQYLPLQKGAEFSMELNPDDGTHELLTVMKKGG--VNRLSMGVQTFNNDL 128

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           LK++ R+HT     + I+  R V  +  +S D I   P +T  DF  ++ +   +     
Sbjct: 129 LKAIGRKHTKETAIRTIENARQVGFE-NMSIDLIFRLPKQTIADFEESLKMAMDLDLPHY 187

Query: 363 FSFKYSPRLGTPGSNMLEQ 381
             +       T   N++ Q
Sbjct: 188 SIYSLILEQKTVFYNLMRQ 206


>gi|331675326|ref|ZP_08376076.1| oxygen-independent coproporphyrinogen III oxidase [Escherichia coli
           TA280]
 gi|331067386|gb|EGI38791.1| oxygen-independent coproporphyrinogen III oxidase [Escherichia coli
           TA280]
          Length = 459

 Score = 55.0 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 44/269 (16%), Positives = 91/269 (33%), Gaps = 30/269 (11%)

Query: 157 EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS-------LSQ 209
           ED  E+  +       +R ++ ++ I   C K C FC        +  ++         +
Sbjct: 36  EDFGEQAFLQAVARYPERPLSLYVHIPF-CHKLCYFCGCNKIVTRQQHKADQYLDALEQE 94

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE-----IKGLVRLR 264
           +V  A       V ++   G       G      K   S L+  L E         + + 
Sbjct: 95  IVHRAPLFAGRKVSQLHWGG-------GTPTYLNKAQISRLMKLLRENFQFNADAEISIE 147

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
                PR++   ++            L + VQ  +  + + +NR         +++  R 
Sbjct: 148 V---DPREIELDVLDHLRAEG--FNRLSMGVQDFNKEVQRLVNREQDEEFIFALLNHARE 202

Query: 325 VRPDIAISS-DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQV 382
           +      ++ D I G P +T + F  T+  V ++   +   F Y+       +   ++  
Sbjct: 203 I--GFTSTNIDLIYGLPKQTPESFAFTLKRVAELNPDRLSVFNYAHLPTIFAAQRKIKDA 260

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVG 411
           D     ++L  LQ+ +     S     +G
Sbjct: 261 DLPSPQQKLDILQETIAFLTQSGYQ-FIG 288


>gi|323484807|ref|ZP_08090164.1| hypothetical protein HMPREF9474_01915 [Clostridium symbiosum
           WAL-14163]
 gi|323401913|gb|EGA94254.1| hypothetical protein HMPREF9474_01915 [Clostridium symbiosum
           WAL-14163]
          Length = 651

 Score = 55.0 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 46/301 (15%), Positives = 95/301 (31%), Gaps = 51/301 (16%)

Query: 125 NVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKF--ERLSIVDGGYNRKRGVTAFLTI 182
           +   G +      E L   +       ++  ++D +    +      Y    G+ A   +
Sbjct: 239 DAFSGRRLVEPYGEHLYVVQNPAAKPLSEEEMDDVYALPYMRNYHPSYEAAGGIPAITEV 298

Query: 183 ------QEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEAR----------KLIDNGVCEI 225
                   GC   C+FC + + +G  + +RS   +V+EA            + D G    
Sbjct: 299 KFSLISNRGCFGGCSFCALTFHQGRIVQTRSHESIVNEAELLTKEPDFKGYIHDVGGPTA 358

Query: 226 TLLGQNVNAWR---------------GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270
                +                     + L+ +   +  LL  L EI  + ++   +   
Sbjct: 359 NFRHPSCEKQMKAGVCPEKQCLFPKPCRNLNADHSDYISLLKKLREIPKVKKVFIRS--G 416

Query: 271 RDMSDCLIKA-HGDLDVLMPY-----LHLPVQSGSDRILKSMNRR----HTAYE--YRQI 318
                 L    H  L  L  Y     L +  +  SD +LK M +     +  +   Y ++
Sbjct: 417 IRFDYLLADPGHAFLKELCEYHVSGQLKVAPEHISDNVLKRMGKPENSVYRRFMKEYEKM 476

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
            +++   +    +    +   PG T  +     + +  +GY       + P   T  + M
Sbjct: 477 NEKLGKKQY---LVPYLMSSHPGSTLTEAVELAEYLRDLGYMPEQVQDFYPTPSTLSTCM 533

Query: 379 L 379
            
Sbjct: 534 Y 534


>gi|319949778|ref|ZP_08023803.1| lipoyl synthase [Dietzia cinnamea P4]
 gi|319436578|gb|EFV91673.1| lipoyl synthase [Dietzia cinnamea P4]
          Length = 336

 Score = 55.0 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 49/250 (19%), Positives = 93/250 (37%), Gaps = 25/250 (10%)

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQ-EGCDKFCTFCVVPYTRGIEISRSLSQVVD 212
           ++V ++    +I +   +R+    A   I  E C + C FC +   +   + R   +   
Sbjct: 50  HTVCEEAGCPNIYECWEDRE----ATFLIGGEQCTRRCDFCQIDTGKPSALDR--DEPRR 103

Query: 213 EARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
            A  + + G+   T+ G      R    DG    +++ +  + E+     +         
Sbjct: 104 VAESVREMGLRYSTITGV----ARDDLDDGGAWLYAETVRKIHELNPNTGVENLIPDFNG 159

Query: 273 MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP-DIAI 331
             D L +       ++ +    V     RI K +     A+ + + +D IR+ R   +  
Sbjct: 160 NPDQLAEVFESRPEVLAHNLETV----PRIFKRIRP---AFRFERSLDVIRAARDFGLVT 212

Query: 332 SSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERL 391
            S+ I+G  GET ++    M  +   G       +Y  R  TP       +D  VK E  
Sbjct: 213 KSNLILGM-GETTEEIVDAMRDLHSAGCDILTITQYL-RP-TP---RHHPIDRWVKPEEF 266

Query: 392 LCLQKKLREQ 401
           + L  + RE 
Sbjct: 267 VELSDQAREI 276


>gi|222035579|emb|CAP78324.1| Oxygen-independent coproporphyrinogen III oxidase [Escherichia coli
           LF82]
 gi|312948436|gb|ADR29263.1| coproporphyrinogen III oxidase [Escherichia coli O83:H1 str. NRG
           857C]
          Length = 457

 Score = 55.0 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 44/269 (16%), Positives = 91/269 (33%), Gaps = 30/269 (11%)

Query: 157 EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS-------LSQ 209
           ED  E+  +       +R ++ ++ I   C K C FC        +  ++         +
Sbjct: 34  EDFGEQAFLQAVARYPERPLSLYVHIPF-CHKLCYFCGCNKIVTRQQHKADQYLDALEQE 92

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE-----IKGLVRLR 264
           +V  A       V ++   G       G      K   S L+  L E         + + 
Sbjct: 93  IVHRAPLFAGRKVSQLHWGG-------GTPTYLNKAQISRLMKLLRENFQFNADAEISIE 145

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
                PR++   ++            L + VQ  +  + + +NR         +++  R 
Sbjct: 146 V---DPREIELDVLDHLRAEG--FNRLSMGVQDFNKEVQRLVNREQDEEFIFALLNHARE 200

Query: 325 VRPDIAISS-DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQV 382
           +      ++ D I G P +T + F  T+  V ++   +   F Y+       +   ++  
Sbjct: 201 I--GFTSTNIDLIYGLPKQTPESFAFTLKRVAELNPDRLSVFNYAHLPTIFAAQRKIKDA 258

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVG 411
           D     ++L  LQ+ +     S     +G
Sbjct: 259 DLPSPQQKLDILQETIAFLTQSGYQ-FIG 286


>gi|157374620|ref|YP_001473220.1| radical SAM family protein [Shewanella sediminis HAW-EB3]
 gi|157316994|gb|ABV36092.1| radical SAM [Shewanella sediminis HAW-EB3]
          Length = 644

 Score = 55.0 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 38/197 (19%), Positives = 68/197 (34%), Gaps = 23/197 (11%)

Query: 180 LTIQEGCDKF-CTFCVVPYTR-GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG 237
           LTI  GC    C+FC V         + S   +VD   +LI+         G+    +  
Sbjct: 367 LTIAHGCYWRKCSFCDVSLDYIDRFDAASADILVDRIEQLIEE-------TGE--TGFHF 417

Query: 238 KGLDGEKCTFSDLLYSLSE----IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHL 293
                       +   L E    I     +R+     R  S    +   D   +      
Sbjct: 418 VDEALPPKLLFAMAKRLIERNVVISWWGNIRF----ERTFSQARCQLLADSGCIAVSG-- 471

Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
            ++  SDR+LK M +  +     Q+          I + +  + GFP +T+ +   ++++
Sbjct: 472 GLEVASDRLLKLMKKGVSVERVAQVTKAFSDA--GILVHAYLMYGFPTQTEQETVDSLEM 529

Query: 354 VDKIGYAQAFSFKYSPR 370
           V ++     F   Y  R
Sbjct: 530 VRQMMKEGCFQSAYWHR 546


>gi|23958222|gb|AAH23635.1| Lipoic acid synthetase [Homo sapiens]
          Length = 372

 Score = 55.0 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 36/186 (19%), Positives = 67/186 (36%), Gaps = 15/186 (8%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLS--QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
           C + C FC V   R       L   +  + A+ + + G+  + L   +    R    DG 
Sbjct: 137 CTRGCRFCSVKTARNP---PPLDASEPYNTAKAIAEWGLDYVVLTSVD----RDDMPDGG 189

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPR-DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
               +  +  L E    + +   T   R D+      A   LDV    +    +  S   
Sbjct: 190 AEHIAKTVSYLKERNPKILVECLTPDFRGDLKAIEKVALSGLDVYAHNVETVPELQS--- 246

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
            K  + R    +  +++   + V+PD+   +  ++G  GE D+   ATM  + +      
Sbjct: 247 -KVRDPRVNFDQSLRVLKHAKKVQPDVISKTSIMLGL-GENDEQVYATMKALREADVDCL 304

Query: 363 FSFKYS 368
              +Y 
Sbjct: 305 TLGQYM 310


>gi|332751657|gb|EGJ82056.1| oxygen-independent coproporphyrinogen III oxidase [Shigella
           flexneri 4343-70]
 gi|332998609|gb|EGK18206.1| oxygen-independent coproporphyrinogen III oxidase [Shigella
           flexneri K-218]
          Length = 457

 Score = 55.0 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 44/269 (16%), Positives = 91/269 (33%), Gaps = 30/269 (11%)

Query: 157 EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS-------LSQ 209
           ED  E+  +       +R ++ ++ I   C K C FC        +  ++         +
Sbjct: 34  EDFGEQAFLQAVARYPERPLSLYVHIPF-CHKLCYFCGCNKIVTRQQHKADQYLDALEQE 92

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE-----IKGLVRLR 264
           +V  A       V ++   G       G      K   S L+  L E         + + 
Sbjct: 93  IVHRAPLFAGRHVSQLHWGG-------GTPTYLNKAQISRLMKLLRENFHFNTDAEISIE 145

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
                PR++   ++            L + VQ  +  + + +NR         +++  R 
Sbjct: 146 V---DPREIELDVLDHLRAEG--FNRLSMGVQDFNKEVQRLVNREQDEEFIFALLNHARE 200

Query: 325 VRPDIAISS-DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQV 382
           +      ++ D I G P +T + F  T+  V ++   +   F Y+       +   ++  
Sbjct: 201 I--GFTSTNIDLIYGLPKQTPESFAFTLKRVAELNPDRLSVFNYAHLPTIFAAQRKIKDA 258

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVG 411
           D     ++L  LQ+ +     S     +G
Sbjct: 259 DLPSPQQKLDILQETIAFLTQSGYQ-FIG 286


>gi|317152134|ref|YP_004120182.1| cobalamin B12-binding domain-containing protein [Desulfovibrio
           aespoeensis Aspo-2]
 gi|316942385|gb|ADU61436.1| cobalamin B12-binding domain protein [Desulfovibrio aespoeensis
           Aspo-2]
          Length = 498

 Score = 55.0 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 52/319 (16%), Positives = 105/319 (32%), Gaps = 32/319 (10%)

Query: 87  IRNLKNSRIKEGGDLLVVVAGC-VAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER--A 143
           ++       ++     +VV G       GE +    P ++VVV  +       +L    A
Sbjct: 87  LKEYSTRIREQFPTTPIVVGGQDHVGRLGERVFDDIPEIDVVVYGEAEKTTLAILRHCIA 146

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGG-----------------YNRKRGVTAFLTIQEGC 186
           +     +  +Y +  K     +                     Y   +   A + +  GC
Sbjct: 147 QKDLEPLCREYPIWVKSRDNKVSTFSSCSEYNVEEIGGLDYSLYCNAKAFPASIEVARGC 206

Query: 187 DKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT 246
              C FC     +   I +S+  ++ EA++L+            +++ +    +   +  
Sbjct: 207 PFHCRFC--SNIKRRYIKKSVVNILGEAKELVKFYEKN------DISIYFQSPIFRMEKE 258

Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306
             +LL +    +GL       +    +S   I    +    +  + L  +SG+  IL +M
Sbjct: 259 EIELLKAERNREGLCFKWRAQTRVDTLSPDDIPLLVEAGAAV--IDLGFESGAPEILLAM 316

Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDF-IVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
            +  T   Y     +I        +     I+ + GE D     T D +         S 
Sbjct: 317 KKTKTPESYLNDAKQILLAAHQAGLIIKLNILFYAGERDTTLLETFDFLSSSE-RYLHSI 375

Query: 366 KYSPRLGTPGSNMLEQVDE 384
              P L  PG+ + E ++ 
Sbjct: 376 SAYPLLVCPGTQLEESIEP 394


>gi|257455877|ref|ZP_05621096.1| lipoyl synthase [Enhydrobacter aerosaccus SK60]
 gi|257446725|gb|EEV21749.1| lipoyl synthase [Enhydrobacter aerosaccus SK60]
          Length = 357

 Score = 55.0 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 70/208 (33%), Gaps = 12/208 (5%)

Query: 161 ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN 220
           E  +  +       G   F+ + + C + C FC V    G   +    + +  A  +   
Sbjct: 86  EEAACPNLPQCFGDGTATFMIMGDICTRRCPFCDV--AHGRPNALDELEPIHTAETIAGL 143

Query: 221 GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKA 280
           G+    +   +    R    DG    F++++    ++     +       R      +  
Sbjct: 144 GLKYAVITSVD----RDDLRDGGAEHFANVIKESRQLSPNCLIEILVPDFRGREQVALDI 199

Query: 281 HGDL-DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGF 339
             D    +  +    V     R+ K+           Q++   ++ RPDI     F+VG 
Sbjct: 200 LSDTAPDVFNHNIETV----PRLYKAFRPGSDYQHSLQLLKDYKARRPDIVTKCGFMVGL 255

Query: 340 PGETDDDFRATMDLVDKIGYAQAFSFKY 367
            GET+++  A +D +           +Y
Sbjct: 256 -GETEEEVYALLDDLKAHDVDLITIGQY 282


>gi|283836448|ref|ZP_06356189.1| radical SAM domain protein [Citrobacter youngae ATCC 29220]
 gi|291067823|gb|EFE05932.1| radical SAM domain protein [Citrobacter youngae ATCC 29220]
          Length = 723

 Score = 55.0 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 49/297 (16%), Positives = 95/297 (31%), Gaps = 58/297 (19%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDN--GVCEIT--LLGQNVNA 234
           + I  GC   C+FC +    G  I SRS   +++E   + D   G   +   L G   N 
Sbjct: 380 INIMRGCFGGCSFCSITEHEGRIIQSRSEDSIINEIEAIRDTVPGFTGVISDLGGPTANM 439

Query: 235 WR----------------------GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
           +                          +D       +L     ++KG+ ++   +    D
Sbjct: 440 YMLRCKSPRAEQTCRRLSCVYPDICPHMDTNHEPTINLYRRARDLKGIKKILIASGVRYD 499

Query: 273 MSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRRH--TAYEYRQIIDRI-RSVRP 327
           ++    +   +L    +  YL +  +   +  L  M +    +   ++++ D   +    
Sbjct: 500 IAVEDPRYIKELATHHVGGYLKIAPEHTEEGPLSKMMKPGMGSYDRFKELFDTYSKQAGK 559

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGY--AQAFSFKYSPRL-------------G 372
           +  +   FI   PG  D+D       + +  +   Q  +F  SP               G
Sbjct: 560 EQYLIPYFISAHPGTRDEDMVNLALWLKQRRFRLDQVQNFYPSPLANSTTMYYTGKNPLG 619

Query: 373 TPGSNMLE-QVDENVKAERL-LCLQK--------KLREQQVSF-NDACVGQIIEVLI 418
             G    +  V +  K  RL   L +         +R+          +G   E L+
Sbjct: 620 KIGYKSEDVVVPKGDKQRRLHKALLRYHDPANWPLIRQALEEMGKKHLIGGRRECLV 676


>gi|168821661|ref|ZP_02833661.1| oxygen-independent coproporphyrinogen III oxidase [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|205341856|gb|EDZ28620.1| oxygen-independent coproporphyrinogen III oxidase [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|320088409|emb|CBY98168.1| O2-independent coproporphyrinogen III oxidase [Salmonella enterica
           subsp. enterica serovar Weltevreden str. 2007-60-3289-1]
          Length = 457

 Score = 55.0 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 41/248 (16%), Positives = 88/248 (35%), Gaps = 20/248 (8%)

Query: 173 KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEI--TLLGQ 230
           +R ++ ++ I   C K C FC        +  +   Q +D   + I +         + Q
Sbjct: 50  ERPLSLYVHIPF-CHKLCYFCGCNKIVTRQQHK-ADQYLDALEQEIRHRAPLFADRHVSQ 107

Query: 231 NVNAWRGKGLDGEKCTFSDLLYSLSE-----IKGLVRLRYTTSHPRDMSDCLIKAHGDLD 285
            ++   G      K   S L+  L E         + +      PR++   ++       
Sbjct: 108 -LHWGGGTPTYLNKAQISRLMTLLRENFHFNTDAEISIEV---DPREIELDVLDHLRAEG 163

Query: 286 VLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS-DFIVGFPGETD 344
                L + VQ  +  + + +NR   A     +++  R +      ++ D I G P +T 
Sbjct: 164 --FNRLSMGVQDFNKEVQRLVNREQDAEFIFALLNHARDI--GFTSTNIDLIYGLPKQTP 219

Query: 345 DDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQV 403
           + F  T+  V ++   +   F Y+       +   ++  D     ++L  LQ+ +     
Sbjct: 220 ESFAFTLKRVTELNPDRLSVFNYAHLPTLFAAQRKIKDADLPSAQQKLDILQETIVSLTQ 279

Query: 404 SFNDACVG 411
           +     +G
Sbjct: 280 AGYQ-FIG 286


>gi|78224718|ref|YP_386465.1| coproporphyrinogen III oxidase, anaerobic [Geobacter
           metallireducens GS-15]
 gi|78195973|gb|ABB33740.1| coproporphyrinogen III oxidase, anaerobic [Geobacter
           metallireducens GS-15]
          Length = 383

 Score = 55.0 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 1/94 (1%)

Query: 288 MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDF 347
           +  L L VQS  DR+L+ + R HTA E +      R    D  I  D I G P ++ D +
Sbjct: 116 VNRLSLGVQSFDDRMLERLGRVHTAREAKDAFALARRAGFD-NIGIDLIHGLPDQSLDHW 174

Query: 348 RATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           R  + +   +      ++  +   GTP + + +Q
Sbjct: 175 RDQLRMAAALRPGHISAYGLTVEEGTPFARLEDQ 208


>gi|23015341|ref|ZP_00055120.1| COG1032: Fe-S oxidoreductase [Magnetospirillum magnetotacticum
           MS-1]
          Length = 353

 Score = 55.0 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/175 (16%), Positives = 48/175 (27%), Gaps = 28/175 (16%)

Query: 92  NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVD 151
                     ++V+ G       E      P ++V V  +      ++LER   G+R +D
Sbjct: 89  RKVKARFPQCVIVMGGAQVPHRPESFFAAHPFLDVAVRGEGEEAFADILERLAEGRRDMD 148

Query: 152 ---------------TDYSVEDKFERLSIVDGGY-----------NRKRGVTAFLTIQEG 185
                           D+S       L      Y           +  +   A +    G
Sbjct: 149 GLPGISWRTPEGEVRIDHSERPFQRDLDAYPSPYLTGLFDDLFVNHPDKNFQAIIETNRG 208

Query: 186 CDKFCTFCVVPY--TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK 238
           C   CTFC              SL +   E   +  +G+  +     N    R  
Sbjct: 209 CPFHCTFCYWGKGGLSRKYRYTSLERTFGEIEWMAAHGIRYLFNADSNFGMHRRD 263


>gi|301023830|ref|ZP_07187564.1| oxygen-independent coproporphyrinogen III oxidase [Escherichia coli
           MS 69-1]
 gi|300396878|gb|EFJ80416.1| oxygen-independent coproporphyrinogen III oxidase [Escherichia coli
           MS 69-1]
          Length = 457

 Score = 55.0 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 44/269 (16%), Positives = 91/269 (33%), Gaps = 30/269 (11%)

Query: 157 EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS-------LSQ 209
           ED  E+  +       +R ++ ++ I   C K C FC        +  ++         +
Sbjct: 34  EDFGEQAFLQAVARYPERPLSLYVHIPF-CHKLCYFCGCNKIVTRQQHKADQYLDALEQE 92

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE-----IKGLVRLR 264
           +V  A       V ++   G       G      K   S L+  L E         + + 
Sbjct: 93  IVHRAPLFAGRKVSQLHWGG-------GTPTYLNKAQISRLMKLLRENFQFNADAEISIE 145

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
                PR++   ++            L + VQ  +  + + +NR         +++  R 
Sbjct: 146 V---DPREIELDVLDHLRAEG--FNRLSMGVQDFNKEVQRLVNREQDEEFIFALLNHARE 200

Query: 325 VRPDIAISS-DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQV 382
           +      ++ D I G P +T + F  T+  V ++   +   F Y+       +   ++  
Sbjct: 201 I--GFTSTNIDLIYGLPKQTPESFAFTLKRVAELNPDRLSVFNYAHLPTIFAAQRKIKDA 258

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVG 411
           D     ++L  LQ+ +     S     +G
Sbjct: 259 DLPSPQQKLDILQETIAFLTQSGYQ-FIG 286


>gi|240144402|ref|ZP_04743003.1| magnesium-protoporphyrin IX monomethyl ester oxidative cyclase
           [Roseburia intestinalis L1-82]
 gi|257203585|gb|EEV01870.1| magnesium-protoporphyrin IX monomethyl ester oxidative cyclase
           [Roseburia intestinalis L1-82]
          Length = 666

 Score = 55.0 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 33/216 (15%), Positives = 74/216 (34%), Gaps = 12/216 (5%)

Query: 144 RFGKRVVDTDYSVEDKFERLSI-VDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           R G  ++ T          +    D   + K  +  + +   GC   C++C+        
Sbjct: 215 RNGDEIIFTAPREMLDLSDIPFCYDKAGDFKNRIIYYES-SRGCPFSCSYCL-SSVEKQL 272

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
             R    V  E +  ID  V ++  + +  N               ++   + E    + 
Sbjct: 273 RFRDAELVKKELQFFIDREVPQVKFVDRTFNCNH--------AHAMEIWSYIKEHDNGIT 324

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
             +       + +  +   G +   +  L + VQS +   +K ++R       ++++  +
Sbjct: 325 NFHFEISADLLREEELALIGTMRPGLIQLEIGVQSTNGATIKEIHRTMQLERLKEVVKEV 384

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           +    +I    D I G P E  D F  + D + ++ 
Sbjct: 385 QKHE-NIHEHLDLIAGLPFEDYDTFAKSFDEIYELR 419


>gi|261342940|ref|ZP_05970798.1| hypothetical protein ENTCAN_09538 [Enterobacter cancerogenus ATCC
           35316]
 gi|288314687|gb|EFC53625.1| oxygen-independent coproporphyrinogen III oxidase [Enterobacter
           cancerogenus ATCC 35316]
          Length = 457

 Score = 55.0 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 41/253 (16%), Positives = 85/253 (33%), Gaps = 30/253 (11%)

Query: 173 KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS-------LSQVVDEARKLIDNGVCEI 225
           +R ++ ++ I   C K C FC        +  ++         +++  A       V ++
Sbjct: 50  ERPLSLYVHIPF-CHKLCYFCGCNKIVTRQQHKADQYLDALEQEILHRAPLFAGRQVSQL 108

Query: 226 TLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL-----RYTTSHPRDMSDCLIKA 280
              G       G      K   S L+  L    G  R            PR++   ++  
Sbjct: 109 HWGG-------GTPTYLNKAQISRLMTLLR---GNFRFNDDAEISIEVDPREIELDVLDH 158

Query: 281 HGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS-DFIVGF 339
                     L + VQ  +  + + +NR         +++  R +      ++ D I G 
Sbjct: 159 LRAEG--FNRLSMGVQDFNKEVQRLVNREQDEEFIFALLNHARDI--GFTSTNIDLIYGL 214

Query: 340 PGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKL 398
           P +T + F  T+  V K+   +   F Y+       +   ++  D     ++L  LQ+ +
Sbjct: 215 PKQTPESFAFTLRRVAKLNPDRLSVFNYAHLPTLFAAQRKIKDADLPSAQQKLDILQETI 274

Query: 399 REQQVSFNDACVG 411
                +     +G
Sbjct: 275 ASLTEAGYQ-FIG 286


>gi|290473291|ref|YP_003466157.1| coproporphyrinogen III oxidase, O2-independent, SAM and NAD(P)H
           dependent [Xenorhabdus bovienii SS-2004]
 gi|289172590|emb|CBJ79359.1| coproporphyrinogen III oxidase, O2-independent, SAM and NAD(P)H
           dependent [Xenorhabdus bovienii SS-2004]
          Length = 457

 Score = 55.0 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 42/238 (17%), Positives = 76/238 (31%), Gaps = 25/238 (10%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C K C FC         ++R   +  D    L         L  Q   +    G  G   
Sbjct: 62  CHKLCYFC----GCNKLVTRQKHKADDYLNILEKEITARARLFSQRKVSQMHWG--GGTP 115

Query: 246 TFSDLLYSLSEIKGLVRLRY---------TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQ 296
           T+ D    +S +  ++R  +             PR++   +I            L + VQ
Sbjct: 116 TYLD-KTQISRLMSVLRSHFDFLPESELSIEIDPREIELDVIDHLRHEG--FNRLSMGVQ 172

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
             +  +   +NR        ++++R R     I+ S D I G P +T + F  T+  V  
Sbjct: 173 DFNKEVQHLVNREQDEDFIFELVNRARET-GFISTSIDLIYGLPKQTSESFAFTLQRVLA 231

Query: 357 IGYAQAFSFKYSPRLGTPGSNM---LEQVDENVKAERLLCLQKKLREQQVSFNDACVG 411
           +   +   F Y+       +        +    +   L  LQ  +     +     +G
Sbjct: 232 LSPDRLSVFNYAHLPDLFAAQRKIKEHDLPSAEQK--LDILQGTIATLTGNGYQ-FIG 286


>gi|291563970|emb|CBL42786.1| putative oxygen-independent coproporphyrinogen III oxidase
           [butyrate-producing bacterium SS3/4]
          Length = 379

 Score = 55.0 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 38/201 (18%), Positives = 68/201 (33%), Gaps = 26/201 (12%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQ-----VVDEARKLIDNGVCEITLLGQNVNAWRGKGL 240
           C + C +C         +S    Q          R+ ID    +   +  +        +
Sbjct: 14  CVRKCAYC-------DFLSFPTDQETQNLYTRRLREDIDAMGKKYGDIPVDT-----IFI 61

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY-------LHL 293
            G   +  D    +  I   VR  +  +   ++S          + L  Y       L  
Sbjct: 62  GGGTPSVPD-SALIVGIMEHVRKAFHVAEGAEISMEANPGTVTREKLTDYRRAGINRLSF 120

Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
            +QS +DR LK + R HT  E+ +     R       I+ D +   PG+T + ++ T+  
Sbjct: 121 GLQSANDRELKLLGRIHTWAEFLESFHLARE-CGFTNINIDLMSALPGQTRESWKDTLKR 179

Query: 354 VDKIGYAQAFSFKYSPRLGTP 374
           V  +      ++      GTP
Sbjct: 180 VTDLNPEHISAYSLIIEDGTP 200


>gi|254457260|ref|ZP_05070688.1| methyltransferase, putative [Campylobacterales bacterium GD 1]
 gi|207086052|gb|EDZ63336.1| methyltransferase, putative [Campylobacterales bacterium GD 1]
          Length = 463

 Score = 55.0 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 40/238 (16%), Positives = 74/238 (31%), Gaps = 25/238 (10%)

Query: 149 VVDTDYSVEDKFERLSIVDGGYNR-----KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
           + D D      +   +I     +R     K      +    GC   C FC          
Sbjct: 161 IEDVDSIPMPAYHLFNIEHYRLSRQANIGKTDFAMPILSGRGCTFTCNFCY--RMDKGFR 218

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
            RS   +++E R L +N           +     +       T S     +    GL   
Sbjct: 219 GRSNESILEEVRYLQENYRINYIAFSDELLMSSIE------RTMSLSQAIIDS--GLKFK 270

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
            Y           ++K   +      +++  ++S  + ILK M++  T  +    I    
Sbjct: 271 WYCNGRLNYAKPKVLKLMKEAG--CVFINYGIESFDNEILKVMHKVLTTKQIEVGIQNTL 328

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA----QAFSFKYSPRLGTPGSN 377
            +   I+   + I G  GET +     +D +  + Y            +P  G+P  +
Sbjct: 329 DI--GISPGFNIIFGNIGETREILMKGVDFL--LKYDDGSQMRTIRPVTPYPGSPLYD 382


>gi|154502610|ref|ZP_02039670.1| hypothetical protein RUMGNA_00423 [Ruminococcus gnavus ATCC 29149]
 gi|153796802|gb|EDN79222.1| hypothetical protein RUMGNA_00423 [Ruminococcus gnavus ATCC 29149]
          Length = 385

 Score = 55.0 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 35/204 (17%), Positives = 72/204 (35%), Gaps = 18/204 (8%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEK 244
           C + C +C         +S   +       + +D    EI    +  ++++   +  G  
Sbjct: 14  CVQKCAYC-------DFLSAPANDAAK--AEYVDALKKEIQRYREVASSYQVSSVFVGGG 64

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY-------LHLPVQS 297
                    + EI  ++R  +T     +++          + L  +       +   +QS
Sbjct: 65  TPSILSCEQMGEIFKMLRQVFTIDRDAEITIEANPGTVTEEKLEGWKQAGINRISFGLQS 124

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
            ++  LK + R HT  E+R+  D  R    D  I+ D I   PG+T   +  T+  V ++
Sbjct: 125 VNNEELKMLGRIHTYEEFRESYDMARQAGFD-NINIDLISAIPGQTVKSWEHTLRTVAEL 183

Query: 358 GYAQAFSFKYSPRLGTPGSNMLEQ 381
                 ++      GT       +
Sbjct: 184 HPEHISAYSLIIEEGTRFYQWYGK 207


>gi|108809738|ref|YP_653654.1| hypothetical protein YPA_3747 [Yersinia pestis Antiqua]
 gi|108781651|gb|ABG15709.1| hypothetical protein YPA_3747 [Yersinia pestis Antiqua]
          Length = 316

 Score = 55.0 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/106 (27%), Positives = 42/106 (39%), Gaps = 11/106 (10%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +L L +Q+ +D+ LK +NR H    Y+Q   R R+    + +    IVG PGE     R 
Sbjct: 148 WLELGLQTANDKTLKRINRGHDFACYQQTARRARAR--GLKVCCHLIVGLPGEDRAQGRE 205

Query: 350 TMDLVDKIGYAQAFSFKYSPRLG-TPGSNMLEQVDENVKAERLLCL 394
           T++ V   G             G T             +A RL  L
Sbjct: 206 TLEKVVTTGVDGIKLHPLHIVEGSTMAKAW--------RAGRLTAL 243


>gi|108813598|ref|YP_649365.1| hypothetical protein YPN_3438 [Yersinia pestis Nepal516]
 gi|145597657|ref|YP_001161733.1| hypothetical protein YPDSF_0341 [Yersinia pestis Pestoides F]
 gi|108777246|gb|ABG19765.1| hypothetical protein YPN_3438 [Yersinia pestis Nepal516]
 gi|145209353|gb|ABP38760.1| hypothetical protein YPDSF_0341 [Yersinia pestis Pestoides F]
          Length = 314

 Score = 55.0 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/106 (27%), Positives = 42/106 (39%), Gaps = 11/106 (10%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +L L +Q+ +D+ LK +NR H    Y+Q   R R+    + +    IVG PGE     R 
Sbjct: 148 WLELGLQTANDKTLKRINRGHDFACYQQTARRARAR--GLKVCCHLIVGLPGEDRAQGRE 205

Query: 350 TMDLVDKIGYAQAFSFKYSPRLG-TPGSNMLEQVDENVKAERLLCL 394
           T++ V   G             G T             +A RL  L
Sbjct: 206 TLEKVVTTGVDGIKLHPLHIVEGSTMAKAW--------RAGRLTAL 243


>gi|78221468|ref|YP_383215.1| radical SAM family protein [Geobacter metallireducens GS-15]
 gi|78192723|gb|ABB30490.1| Radical SAM [Geobacter metallireducens GS-15]
          Length = 502

 Score = 55.0 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 37/176 (21%), Positives = 62/176 (35%), Gaps = 19/176 (10%)

Query: 185 GCD-KFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
           GC    C+FC              SQ +DE R L D     +  L  N  +         
Sbjct: 258 GCWWNRCSFCPERAEGNPYRPIPASQALDELRTLADRYRPALIHLLDNAVSP-------- 309

Query: 244 KCTFSDLLYSLSEIK-GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
                 LL SL+    G     +             +A      +M  L L ++SG   +
Sbjct: 310 -----SLLRSLANTPPGAPWYGFARIDDTLADYDFCRALRRSGCVM--LKLGLESGDQGV 362

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           L  +++        ++++ +R     IA+    + G P E ++D R T+D V +  
Sbjct: 363 LDRLHKGIDLGTAGRVLENLR--LAGIAVYGYLLFGTPAEAEEDARRTLDFVVRHR 416


>gi|16081159|ref|NP_388865.1| coproporphyrinogen III oxidase [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|221308821|ref|ZP_03590668.1| coproporphyrinogen III oxidase [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|221313144|ref|ZP_03594949.1| coproporphyrinogen III oxidase [Bacillus subtilis subsp. subtilis
           str. NCIB 3610]
 gi|221318068|ref|ZP_03599362.1| coproporphyrinogen III oxidase [Bacillus subtilis subsp. subtilis
           str. JH642]
 gi|221322343|ref|ZP_03603637.1| coproporphyrinogen III oxidase [Bacillus subtilis subsp. subtilis
           str. SMY]
 gi|59799598|sp|Q796V8|HEMZ_BACSU RecName: Full=Oxygen-independent coproporphyrinogen-III oxidase 2;
           Short=Coprogen oxidase; Short=Coproporphyrinogenase
 gi|32468726|emb|CAB12823.2| coproporphyrinogen III oxidase [Bacillus subtilis subsp. subtilis
           str. 168]
          Length = 501

 Score = 55.0 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 41/218 (18%), Positives = 83/218 (38%), Gaps = 19/218 (8%)

Query: 162 RLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR-----GIEIS------RSLSQV 210
           +L+ V   Y  K  V+ ++ I   C   C +C  P        G   S        + ++
Sbjct: 157 QLAAVPDLYRVKDEVSIYIGIPF-CPTKCAYCTFPAYAIQGQAGRVGSFLWGLHYEMQKI 215

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270
            +  ++  D  V  I   G    +   + +D     + +++ S  ++K +  +      P
Sbjct: 216 GEWLKEH-DVKVTTIYFGGGTPTSITAEEMDL---LYEEMVRSFPDVKNIREITVEAGRP 271

Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330
             +++  +      D+    + +  QS  +  LK++ R HT  E  +     R    +  
Sbjct: 272 DTITEEKLAVLNKYDI--DRISINPQSYENETLKAIGRHHTVEETIEKYHLSRQHGMN-N 328

Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
           I+ D I+G PGE   +FR ++   +K+          S
Sbjct: 329 INMDLIIGLPGEGVKEFRHSLSETEKLMPESLTVHTLS 366


>gi|22124047|ref|NP_667470.1| hypothetical protein y0127 [Yersinia pestis KIM 10]
 gi|45443541|ref|NP_995080.1| hypothetical protein YP_3810 [Yersinia pestis biovar Microtus str.
           91001]
 gi|166212030|ref|ZP_02238065.1| radical SAM protein, TIGR01212 family [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|167469339|ref|ZP_02334043.1| Uncharacterized Fe-S oxidoreductase [Yersinia pestis FV-1]
 gi|170022782|ref|YP_001719287.1| putative radical SAM protein [Yersinia pseudotuberculosis YPIII]
 gi|186896984|ref|YP_001874096.1| putative radical SAM protein [Yersinia pseudotuberculosis PB1/+]
 gi|270488526|ref|ZP_06205600.1| radical SAM protein, TIGR01212 family [Yersinia pestis KIM D27]
 gi|21956793|gb|AAM83721.1|AE013613_1 hypothetical protein y0127 [Yersinia pestis KIM 10]
 gi|45438410|gb|AAS63957.1| Uncharacterized Fe-S oxidoreductases [Yersinia pestis biovar
           Microtus str. 91001]
 gi|166206776|gb|EDR51256.1| radical SAM protein, TIGR01212 family [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|169749316|gb|ACA66834.1| conserved hypothetical radical SAM protein [Yersinia
           pseudotuberculosis YPIII]
 gi|186700010|gb|ACC90639.1| conserved hypothetical radical SAM protein [Yersinia
           pseudotuberculosis PB1/+]
 gi|262363384|gb|ACY60105.1| hypothetical protein YPD4_3201 [Yersinia pestis D106004]
 gi|262367238|gb|ACY63795.1| hypothetical protein YPD8_3125 [Yersinia pestis D182038]
 gi|270337030|gb|EFA47807.1| radical SAM protein, TIGR01212 family [Yersinia pestis KIM D27]
          Length = 329

 Score = 55.0 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/106 (27%), Positives = 42/106 (39%), Gaps = 11/106 (10%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +L L +Q+ +D+ LK +NR H    Y+Q   R R+    + +    IVG PGE     R 
Sbjct: 163 WLELGLQTANDKTLKRINRGHDFACYQQTARRARAR--GLKVCCHLIVGLPGEDRAQGRE 220

Query: 350 TMDLVDKIGYAQAFSFKYSPRLG-TPGSNMLEQVDENVKAERLLCL 394
           T++ V   G             G T             +A RL  L
Sbjct: 221 TLEKVVTTGVDGIKLHPLHIVEGSTMAKAW--------RAGRLTAL 258


>gi|325000247|ref|ZP_08121359.1| Radical SAM domain protein [Pseudonocardia sp. P1]
          Length = 666

 Score = 55.0 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 66/417 (15%), Positives = 118/417 (28%), Gaps = 81/417 (19%)

Query: 52  GYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVV----VAG 107
           G+   N    AD + +          E V      ++  K+     G   L+V      G
Sbjct: 150 GHAAFNPEPVADFVDV---AALGDGEEVVGDITDVVKGWKDEGRPGGRHELLVRLAGTPG 206

Query: 108 CVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVD 167
           C   +  +        +  V   +        +      +  V+ D     K   + + +
Sbjct: 207 CYVPSLYDVTYGDDGAITAVAPAEDR------VPTTVQKRTTVELDEWPYPKKPLVPLAE 260

Query: 168 GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITL 227
             + R     A + I  GC + C FC           RSL  + +     + +       
Sbjct: 261 TVHER-----ASVEIFRGCTRGCRFCQAGMITRPVRERSLQGIGEMVDAAVRSS------ 309

Query: 228 LGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY---------TTSHPRDMSDCLI 278
                    G    G     S     ++E+   +  RY          ++     +  L 
Sbjct: 310 ---------GFDEVGLLSLSSADHSEIAEVTKGLADRYEGTNTSLSLPSTRVDAFNIDLA 360

Query: 279 KAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR-----IRSVRPDIAISS 333
                       L    + GS+RI + +N+  +  +  +          R V+       
Sbjct: 361 NEISRNGR-RSGLTFAPEGGSERIRRVINKMVSEDDLIRTCAEAFSQGWRQVK------L 413

Query: 334 DFIVGFPGETDDDFRA----TMDLVDKIGYAQ--------AFSFKYSPRLGTPGSNMLEQ 381
            F+ G P ETD+D          ++     A              + P+  TP      Q
Sbjct: 414 YFMCGLPTETDEDVLEIAGMAYRVIQAGRKASGRNDVRCTISIGGFVPKPHTP-FQWASQ 472

Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQII--------EVLIEKHGKEKGKLVG 430
               V   RL  L++ +        D  +G+ I          LIE       + VG
Sbjct: 473 CHPEVVDSRLRKLREAVNA------DRKIGRNIGMRYHDGEPSLIEGLLARGDRRVG 523


>gi|265752140|ref|ZP_06087933.1| oxygen-independent coproporphyrinogen III oxidase [Bacteroides sp.
           3_1_33FAA]
 gi|263236932|gb|EEZ22402.1| oxygen-independent coproporphyrinogen III oxidase [Bacteroides sp.
           3_1_33FAA]
          Length = 376

 Score = 55.0 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 38/202 (18%), Positives = 69/202 (34%), Gaps = 15/202 (7%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR---GKGLDG 242
           C K C +C    T   E     + +     +L D    +  L G+ +       G     
Sbjct: 11  CKKRCIYCDFFSTTRKEQ--KTAYIRALCHELTD---RKNYLKGEPIETIYLGGGTPSQL 65

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPR--DMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300
            K  F  +   + ++  +      T      D++   I            + + +Q+  +
Sbjct: 66  AKEDFEAIFSHIYKVYKVTPNAEITLEANPDDLTSEYISMLRTFP--FNRISMGIQTFQE 123

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDI-AISSDFIVGFPGETDDDFRATMDLVDKIGY 359
             LK + RRHTA +  +     R+       IS D + G PGET   ++  +     +  
Sbjct: 124 TTLKQLQRRHTADQAIRAFQGCRTA--GFQNISIDLMYGLPGETLTSWKKDLKQALSLHP 181

Query: 360 AQAFSFKYSPRLGTPGSNMLEQ 381
               ++      GTP   + EQ
Sbjct: 182 EHISAYHLIYEEGTPLWKLREQ 203


>gi|238785116|ref|ZP_04629111.1| hypothetical protein yberc0001_380 [Yersinia bercovieri ATCC 43970]
 gi|238714008|gb|EEQ06025.1| hypothetical protein yberc0001_380 [Yersinia bercovieri ATCC 43970]
          Length = 300

 Score = 55.0 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 45/121 (37%), Gaps = 12/121 (9%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +L L +Q+ +D+ LK +NR H    Y+Q   R R+    + +    IVG PGE       
Sbjct: 141 WLELGLQTANDKTLKRINRGHDFACYQQTARRARAR--GLKVCCHLIVGLPGEDQAQGME 198

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDAC 409
           T+++V   G             G+  +          KA R   L     E  V      
Sbjct: 199 TLEMVVATGVDGLKLHPLHIVEGSTMA----------KAWRAGRLPALALEDYVQTAGEM 248

Query: 410 V 410
           +
Sbjct: 249 I 249


>gi|254520435|ref|ZP_05132491.1| radical SAM protein [Clostridium sp. 7_2_43FAA]
 gi|226914184|gb|EEH99385.1| radical SAM protein [Clostridium sp. 7_2_43FAA]
          Length = 307

 Score = 55.0 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 38/200 (19%), Positives = 65/200 (32%), Gaps = 18/200 (9%)

Query: 188 KFCTFCVVPYTRGIEISRSL------SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD 241
             CTFC    +     SR+L          D   K   +G   I       N +      
Sbjct: 45  GGCTFCSARGSGDFAGSRTLSITKQFEDRKDMMEKKWKDG-KLIAYFQAYTNTYAPVEEL 103

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
             K   +    ++  I    R         +    L       +     + L +Q+ +D 
Sbjct: 104 RRKYKEALTQKNVVAISIATRPDCIDDDVLEFLTEL------NEKTYLIVELGLQTINDE 157

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
             ++ NR +    +   + R+     +I + +  I G PGET++D   T+D +   G   
Sbjct: 158 TARNFNRGYDFKVFDDTLKRLLER--NIEVVAHTIFGLPGETEEDMLRTVDYIAHSGAKG 215

Query: 362 AFSFKYSPRLGTPGSNMLEQ 381
                     GT    M+EQ
Sbjct: 216 IKFHLLHLMEGT---KMVEQ 232


>gi|226226157|ref|YP_002760263.1| lipoyl synthase [Gemmatimonas aurantiaca T-27]
 gi|226089348|dbj|BAH37793.1| lipoyl synthase [Gemmatimonas aurantiaca T-27]
          Length = 337

 Score = 55.0 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/215 (13%), Positives = 68/215 (31%), Gaps = 11/215 (5%)

Query: 153 DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVD 212
           + ++    E     + G   + G   F+ +   C + C +C V + R       + +   
Sbjct: 78  ELNLHSVCEEARCPNIGECWEHGTATFMILGSVCTRNCAYCAVSHGRPPA--YDIEEPSR 135

Query: 213 EARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
            A+ + +  +    +   +    R    D     F++ +  + +      +       + 
Sbjct: 136 VAQAIGELNLRHAVITSVD----RDDLPDFGAYIFAETIRQIRQRLPGCSVEVLVPDFQG 191

Query: 273 MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAIS 332
             D +         +  +    V     R+ K            +I    + + PDI   
Sbjct: 192 NEDSIRAVLEARPDIYNHNTETV----PRLYKKARPGGRYPRLLEIFRIAKRIAPDIPTK 247

Query: 333 SDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           +  I+G  GET+++    M  +  +        +Y
Sbjct: 248 TGIILGL-GETNEEVVEVMKDLRSVDVDILTLGQY 281


>gi|237809575|ref|YP_002894015.1| lipoyl synthase [Tolumonas auensis DSM 9187]
 gi|259494943|sp|C4LCC5|LIPA_TOLAT RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|237501836|gb|ACQ94429.1| lipoic acid synthetase [Tolumonas auensis DSM 9187]
          Length = 321

 Score = 55.0 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/182 (15%), Positives = 62/182 (34%), Gaps = 10/182 (5%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V    G  ++    +    A  + +  +  + +   +    R    DG   
Sbjct: 94  CTRHCPFCDV--AHGKPLAPDADEPKKLANTIREMALKYVVITSVD----RDDLRDGGAQ 147

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
            F+D +  +       R+   T   R   D  +    +     P +       + R+   
Sbjct: 148 HFADCIREIRLASPNTRIETLTPDFRGRMDKALDVFRETP---PDVFNHNLETAPRLYSM 204

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
                      +++ +++ + PD+   S  ++G  GET+D+    +  +   G       
Sbjct: 205 ARPGADYAWSLKLLQKMKELHPDLPTKSGLMMGL-GETNDEIVQVLKDLRAHGVTMLTLG 263

Query: 366 KY 367
           +Y
Sbjct: 264 QY 265


>gi|148560331|ref|YP_001259045.1| lipoyl synthase [Brucella ovis ATCC 25840]
 gi|166226348|sp|A5VQP8|LIPA_BRUO2 RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|148371588|gb|ABQ61567.1| lipoic acid synthetase [Brucella ovis ATCC 25840]
          Length = 322

 Score = 55.0 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/195 (14%), Positives = 70/195 (35%), Gaps = 11/195 (5%)

Query: 173 KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNV 232
           ++    F+ + E C + C FC +       +    ++  + A+ +   G+  + +   + 
Sbjct: 73  EKKHATFMIMGEICTRACAFCNISTGIPNAL--DPNEPENIAKAVKQMGLTHVVITSVD- 129

Query: 233 NAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLH 292
              R    DG    F++++ ++ E      +   T         L         +  +  
Sbjct: 130 ---RDDLADGGAHHFAEVIKAVREAAPATTIEILTPDFLRKEGALEIVVKARPDVFNH-- 184

Query: 293 LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352
             +++   + LK +      +   +++ R++ + P I   S  +VG  GE  ++    MD
Sbjct: 185 -NLETVPSKYLK-VRPGARYFHSIRLLQRVKELDPTIFTKSGIMVGL-GEERNEILQLMD 241

Query: 353 LVDKIGYAQAFSFKY 367
            +           +Y
Sbjct: 242 DLRSADVDFMTIGQY 256


>gi|117923841|ref|YP_864458.1| lipoyl synthase [Magnetococcus sp. MC-1]
 gi|171460775|sp|A0L509|LIPA_MAGSM RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|117607597|gb|ABK43052.1| lipoic acid synthetase [Magnetococcus sp. MC-1]
          Length = 296

 Score = 55.0 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 32/205 (15%), Positives = 69/205 (33%), Gaps = 15/205 (7%)

Query: 174 RGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVN 233
            G  AF+ + + C + C FC V    G  +  +  +    A       +  + +   +  
Sbjct: 59  EGSAAFMILGDTCTRRCAFCNVK--TGKPLPPNPDEPQQLALTAQRMELKHVVITSVD-- 114

Query: 234 AWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHL 293
             R    DG    F   + +L  +     +   T   R     L +       +  +   
Sbjct: 115 --RDDLEDGGAGQFIACIQALRRVLPEASVEVLTPDFRHKQGALERLVAARPDVFNH--- 169

Query: 294 PVQSGSDRILKSMNRRHTAYEY-RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352
                +   L +  R  ++Y +  +++ R + + P+    S  ++G  GE + +  A   
Sbjct: 170 --NVETVPRLYANVRPVSSYAFSLEVLRRAKQLNPEGMTKSGIMLGL-GEDEAEVLAVFA 226

Query: 353 LVDKIGYAQAFSFKYSPRLGTPGSN 377
            +   G       +Y  R  +P  +
Sbjct: 227 DLRAAGVDYLTVGQYL-RP-SPAHH 249


>gi|95929264|ref|ZP_01312008.1| Radical SAM [Desulfuromonas acetoxidans DSM 684]
 gi|95134762|gb|EAT16417.1| Radical SAM [Desulfuromonas acetoxidans DSM 684]
          Length = 500

 Score = 55.0 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 54/286 (18%), Positives = 95/286 (33%), Gaps = 47/286 (16%)

Query: 95  IKEGGDLLVVVAGCVAQAEGEEILRRSP----IVNVVVGPQTYYRLPELLERARFGKRVV 150
            K    + ++V G +  +       ++P    I + V GP     L +LL          
Sbjct: 174 KKIAPQVTIIVGGGLMTSWMRHPNWQNPFKSCIDHCVDGPGE-AALLKLLGVHPQQNLTA 232

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCD-KFCTFCVVPYTRGIEISRSLSQ 209
             DYSV       S               L    GC    CTFC     +      ++S 
Sbjct: 233 PPDYSVLPLEHYWSPSP---------ILPLATSRGCYWNRCTFCPERAEQNPYHPLTVST 283

Query: 210 VVDEARKLIDNGVCEITLLGQN------VNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           +V++   L       +  L  N      +NA   + L      F+ +   L+        
Sbjct: 284 IVEQLHHLCSEWQPGLVHLLDNAISPALINALMAQPLPAPWYGFARISKQLA-------- 335

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
                          +A      +M  + L V+SG +++L+SM++  T     ++++ ++
Sbjct: 336 ----------DPDYCRALRQSGCIM--IKLGVESGDNQVLESMDKGVTVELTERVLNSLK 383

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLV----DKIGYAQAFSF 365
                IA     + G P E  D   AT   +    + IG+     F
Sbjct: 384 --LAGIATYVYLLFGTPTENLDAAEATRQFICRNHEAIGFLNLAIF 427


>gi|312962434|ref|ZP_07776925.1| oxygen-independent coproporphyrinogen III oxidase [Pseudomonas
           fluorescens WH6]
 gi|311283361|gb|EFQ61951.1| oxygen-independent coproporphyrinogen III oxidase [Pseudomonas
           fluorescens WH6]
          Length = 460

 Score = 55.0 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 47/267 (17%), Positives = 94/267 (35%), Gaps = 27/267 (10%)

Query: 159 KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC----VVPYTRGIEISR--SLSQVVD 212
            F+ L  +       R ++ ++ +   C   C +C    V+   RG   +    L Q + 
Sbjct: 37  TFDLLHALRDSRKAARPLSLYVHVPF-CANICYYCACNKVITKDRGRAHAYLQRLEQEIQ 95

Query: 213 EARKLID--NGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270
                +D    V ++   G          L             L +  G   +       
Sbjct: 96  LVACHLDPKQPVEQLHFGGGTPTFLSHDELRQVMTCLRQHFNLLDDDSGDYGIEIDPREA 155

Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330
              +  L++  G        + + +Q     + +++NR  +  E R +ID  R+++   +
Sbjct: 156 DWATMGLLRELG-----FNRVSVGLQDLDPEVQRAVNRLQSLEETRAVIDAARTLQFR-S 209

Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML------EQVDE 384
           I+ D I G P +T  +F  T++ V K+   +   F Y+         M       + +  
Sbjct: 210 INIDLIYGLPKQTPINFARTVEEVIKLQPDRLSVFNYAHLPE---RFMPQRRINTDDLPS 266

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVG 411
              AE+LL LQ  + +   +     +G
Sbjct: 267 P--AEKLLMLQTTIEQLTQAGY-RYIG 290


>gi|169335102|ref|ZP_02862295.1| hypothetical protein ANASTE_01509 [Anaerofustis stercorihominis DSM
           17244]
 gi|169257840|gb|EDS71806.1| hypothetical protein ANASTE_01509 [Anaerofustis stercorihominis DSM
           17244]
          Length = 642

 Score = 55.0 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 37/271 (13%), Positives = 83/271 (30%), Gaps = 41/271 (15%)

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-S 204
            +  +D  Y ++   +   +        + +   +T   GC   C+FC + + +G  + S
Sbjct: 268 NREELDKVYGLKYTRKSHPMYKKEIPAIKEIEFSVTSNRGCFGNCSFCALTFHQGRMVQS 327

Query: 205 RSLSQVVDEARK------------------------LIDNGVCEITLLGQNVNAWRGKGL 240
           RS   +++E +                           +  +   T +G N         
Sbjct: 328 RSKKSIIEEVKLLTTLDGFKGYIHDIGGPTANFKHPSCNKQMEHGTCIGFNKTCLSPTPC 387

Query: 241 DGEKCTFSDLLYSLSEIKGLVR---------LRYTTSHPRDMSDCLIKAHGDLDVLMPYL 291
                  S+ +  L E + +           +RY           L +       +   L
Sbjct: 388 KNINADHSEFIDVLREARKVKNVKKVFVRSGIRYDYLLLEKDPKVLEELVKYH--ISGQL 445

Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSD----FIVGFPGETDDDF 347
            +  +  +++ LK M +      Y + +D+ +     + ++      FI   PG T +  
Sbjct: 446 KIAPEHINNKTLKQMGKPG-REVYEEFVDKYKKANKKMGLNQFLVPYFISSHPGCTLEGA 504

Query: 348 RATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
                 + +          + P  GT  + M
Sbjct: 505 VELAVYLKQNNLRPRQVQDFYPTPGTLSTCM 535


>gi|209547615|ref|YP_002279532.1| coproporphyrinogen III oxidase [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209533371|gb|ACI53306.1| oxygen-independent coproporphyrinogen III oxidase [Rhizobium
           leguminosarum bv. trifolii WSM2304]
          Length = 401

 Score = 55.0 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 31/202 (15%), Positives = 63/202 (31%), Gaps = 16/202 (7%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C   C +C           + + Q    A   +        L G          L G   
Sbjct: 34  CAAKCPYC---DFNSHVRHQPVDQ-ERFASAFLKEMAAVRALSGPKTVTS--IFLGGGTP 87

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY-------LHLPVQSG 298
           +        + + G+ R  +      +++     +  + +    Y       + L VQ+ 
Sbjct: 88  SLMKPETVSAILDGIAR-HWHVPAGIEITMEANPSSVEAERFRGYRAAGVNRVSLGVQAL 146

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
            DR LK + R H   +  + I   R + P ++   D I   P +T + +   +       
Sbjct: 147 DDRDLKFLGRLHDVADALKAIRLARDIFPRMSF--DLIYARPDQTVEQWERELKQAISYA 204

Query: 359 YAQAFSFKYSPRLGTPGSNMLE 380
                 ++ +   GTP   + +
Sbjct: 205 VDHLSLYQLTIEEGTPFYGLHK 226


>gi|124007590|ref|ZP_01692294.1| radical SAM [Microscilla marina ATCC 23134]
 gi|123986888|gb|EAY26653.1| radical SAM [Microscilla marina ATCC 23134]
          Length = 647

 Score = 55.0 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 48/273 (17%), Positives = 89/273 (32%), Gaps = 51/273 (18%)

Query: 152 TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQ----EGCDKFCTFCVVPYTRGIEI-SRS 206
            D+S +  + RL                +        GC   C+FC +   +G  I SRS
Sbjct: 292 IDHSFDLPYTRLPHPKYKKRGAIPAYEMIKFSINMHRGCFGGCSFCTISAHQGKFIASRS 351

Query: 207 LSQV---VDEARKLIDNGVCEITLLGQNVNAWRGKG----------------------LD 241
              +   VD   K+ D       L G + N ++ KG                      LD
Sbjct: 352 KESIMKEVDAVTKMPDFKGYISDLGGPSANMYKMKGKVQEICDRCVAPSCIHPVVCHNLD 411

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL---------------DV 286
                 +++    +    + +    +    D+   L+K H  +               + 
Sbjct: 412 TSHKPLTEIYKEAAAHPSVKKAFVGSGIRYDL---LVKGHNKVGDDDDMEEYMDNLIQNH 468

Query: 287 LMPYLHLPVQSGSDRILKSMNRR--HTAYEYRQIIDRI-RSVRPDIAISSDFIVGFPGET 343
           +   L +  +  SD  LK M +      +++++  DRI +    D  +   FI G PG  
Sbjct: 469 ISGRLKVAPEHTSDNTLKIMRKPSFKHFHDFKKRYDRINKKYGKDQPLIPYFISGHPGCE 528

Query: 344 DDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
           ++D          +G+       ++P   T  +
Sbjct: 529 EEDMANLACETKDMGFQLEQVQGFTPTPMTVAT 561


>gi|15242697|ref|NP_201134.1| coproporphyrinogen oxidase-related [Arabidopsis thaliana]
 gi|10177310|dbj|BAB10571.1| oxygen-independent coproporphyrinogen-like protein [Arabidopsis
           thaliana]
 gi|115311487|gb|ABI93924.1| At5g63290 [Arabidopsis thaliana]
 gi|332010345|gb|AED97728.1| oxygen-independent coproporphyrinogen III oxidase [Arabidopsis
           thaliana]
          Length = 484

 Score = 55.0 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 38/213 (17%), Positives = 70/213 (32%), Gaps = 21/213 (9%)

Query: 186 CDKFCTFCVVPYTR--GIEISRSLSQVVDEARKLIDNGVCEITL---------LGQNVNA 234
           C K C +C  P         S   S V +E ++        + L            + N 
Sbjct: 66  CRKRCHYCDFPILALGMSSSSARPSNVYEEGKEDDPRITNYVNLLVREIKATRTDFDTNP 125

Query: 235 WRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLI------KAHGDLDVL- 287
                  G           +S I   + L +  S   ++S  +       +   DL  L 
Sbjct: 126 NLETVFFGGGTPSLVPPKLVSLILETLSLNFGLSPDAEISMEMDPGTFDGQKLKDLMKLG 185

Query: 288 MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS-DFIVGFPGETDDD 346
           +  + L VQ+  D +LK+  R H   +  + I+ ++     +   S D I   P +T + 
Sbjct: 186 VNRVSLGVQAFQDELLKACGRAHGVSQVYEAIEFVKEC--GVENWSMDLISSLPHQTLEM 243

Query: 347 FRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
           +  ++ L  +        +      GT   N+ 
Sbjct: 244 WEESLRLAIESQPNHVSVYDLQVEQGTKFGNLY 276


>gi|307288258|ref|ZP_07568256.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Enterococcus faecalis TX0109]
 gi|306500774|gb|EFM70094.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Enterococcus faecalis TX0109]
 gi|315164176|gb|EFU08193.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Enterococcus faecalis TX1302]
          Length = 382

 Score = 55.0 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 49/254 (19%), Positives = 97/254 (38%), Gaps = 28/254 (11%)

Query: 177 TAFLTIQEGCDKFCTFCVV--PYTRGIEISRSLSQVVDEARKLI----DNGVCEITLLGQ 230
           +A++ I   C+  C +C     +  G  +   +  ++ E +       +  +  I + G 
Sbjct: 5   SAYIHIPF-CEHICYYCDFNKVFLEGQPVDEYIQSLLKEIQLTQALYPEQEMKTIYIGGG 63

Query: 231 NVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT-SHPRDMSDCLIKAHGDLDVLMP 289
              +   K LD        +   L       R  +T  ++P D++   ++   +    + 
Sbjct: 64  TPTSLSAKQLD---VLLKGVREQL---TFDDRNEFTVEANPGDLTQEKLQVMKNYG--VN 115

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI-RSVRPDIAISSDFIVGFPGETDDDFR 348
            L + VQ+  DR+LK + R+HTA +  + +  + +    +++I  D I   PG+T + FR
Sbjct: 116 RLSMGVQTFDDRLLKKIGRKHTAADVYETMKFLEKENFTNVSI--DLIYALPGQTLESFR 173

Query: 349 ATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE----QVDENVKA-----ERLLCLQKKLR 399
            T+     +       +       T   N +     Q+ E         E +  + KK R
Sbjct: 174 DTLTRALALDLPHYSLYSLILENKTMFMNWVRQGRLQLPEEEIEAQMFDETIEAMDKKGR 233

Query: 400 EQQVSFNDACVGQI 413
            Q    N A  G+ 
Sbjct: 234 HQYEVSNFALTGKE 247


>gi|295702734|ref|YP_003595809.1| oxygen-independent coproporphyrinogen III oxidase 2 [Bacillus
           megaterium DSM 319]
 gi|294800393|gb|ADF37459.1| oxygen-independent coproporphyrinogen III oxidase 2 [Bacillus
           megaterium DSM 319]
          Length = 499

 Score = 55.0 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 40/250 (16%), Positives = 83/250 (33%), Gaps = 19/250 (7%)

Query: 129 GPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
           G        EL E        ++    + D+  +L+ +   +  K  V+ ++ I   C  
Sbjct: 129 GKSKEQAHRELKEEYLITDDKINLMQHIVDR--QLAAIPDLHELKNEVSIYIGIPF-CPT 185

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQN----VNAWRGKGLDGEK 244
            C +C  P         S++  +      +         L  N       + G G     
Sbjct: 186 KCAYCTFPAYAINGRQGSVTSFLGGLHYEMREVGK---WLKDNNVKITTVYYGGGTPTSI 242

Query: 245 C------TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
                   + ++  S  +++ +  +      P  +++  +         +  + +  QS 
Sbjct: 243 TAEEMDMLYEEMYESFPDVQNIREITVEAGRPDTITEEKLAVL--NKWNIDRISVNPQSY 300

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
               LK++ R HT  E        R +  +  I+ D I+G P E  ++F+ T+D   K+ 
Sbjct: 301 IQETLKAIGRHHTVEETIDKFHLSRKMGMN-NINMDLIIGLPNEGVEEFQHTLDESKKLL 359

Query: 359 YAQAFSFKYS 368
                    S
Sbjct: 360 PESLTVHTLS 369


>gi|195479995|ref|XP_002086625.1| GE22745 [Drosophila yakuba]
 gi|306755872|sp|B4IUG3|LIAS1_DROYA RecName: Full=Lipoyl synthase 1, mitochondrial; AltName:
           Full=Lipoate synthase 1; Short=LS 1; Short=Lip-syn 1;
           AltName: Full=Lipoic acid synthase 1; Flags: Precursor
 gi|194186415|gb|EDX00027.1| GE22745 [Drosophila yakuba]
          Length = 379

 Score = 55.0 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/186 (14%), Positives = 63/186 (33%), Gaps = 15/186 (8%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQV---VDEARKLIDNGVCEITLLGQNVNAWRGKGLDG 242
           C + C FC V   R          V   V+ A  +   G+  I L   +    R    DG
Sbjct: 137 CTRGCRFCSVKTARKP----PPLDVNEPVNTATAIASWGLDYIVLTSVD----RDDLPDG 188

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
                ++ +  +      + +       R  +   ++   +  + +   ++         
Sbjct: 189 GSKHIAETVREIKARNSNIFVECLVPDFRG-NLECVETIANSGLDVYAHNIETVEKLTPY 247

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           ++     +   +  Q++   +   P++   S  ++G  GETD++  +T+  +   G    
Sbjct: 248 VRDRRAHYR--QTLQVLTEAKRFNPNLITKSSIMLGL-GETDEEIESTLKDLRTAGVDCV 304

Query: 363 FSFKYS 368
              +Y 
Sbjct: 305 TLGQYM 310


>gi|150389120|ref|YP_001319169.1| radical SAM domain-containing protein [Alkaliphilus metalliredigens
           QYMF]
 gi|149948982|gb|ABR47510.1| Radical SAM domain protein [Alkaliphilus metalliredigens QYMF]
          Length = 289

 Score = 55.0 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 48/232 (20%), Positives = 86/232 (37%), Gaps = 23/232 (9%)

Query: 169 GYNRKRGVTAFLTIQEGCDKF-CTFCVVPYTRGIEISRSLSQVVDEARKLIDN--GVCEI 225
                   +  +    GC    CTFC + Y   +   R L ++  +  +  +    V +I
Sbjct: 8   YRPPSEAYSLIVQTTIGCSHNACTFCDM-YKDKVFRVRKLGEIEKDLIEAREQYNEVKKI 66

Query: 226 TLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL- 284
            L   N  A +   L        +L      I          S P+D+     +   +L 
Sbjct: 67  FLADGNSLALKTSDLKSILIKIKELFPECQRIG-------VYSAPKDILRKTTEELSELQ 119

Query: 285 DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPG--E 342
           D+ +   +L V+SGSD ILK + +  T+ E  +   +I  V   I +S   I G  G  +
Sbjct: 120 DLGLKIAYLGVESGSDEILKKIKKGVTSAEMIEAGKKI--VGSGIKLSVTLISGLGGKDK 177

Query: 343 TDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCL 394
           + +  + +  ++++I            + GT          E VK++R   L
Sbjct: 178 SQEHAKESARVINEINPHYLGLLTLMVQPGTEMY-------EEVKSDRFQLL 222


>gi|50842311|ref|YP_055538.1| Fe-S oxidoreductase family protein 2 [Propionibacterium acnes
           KPA171202]
 gi|50839913|gb|AAT82580.1| putative Fe-S oxidoreductases family 2 [Propionibacterium acnes
           KPA171202]
 gi|314923181|gb|EFS87012.1| radical SAM domain protein [Propionibacterium acnes HL001PA1]
 gi|314981290|gb|EFT25384.1| radical SAM domain protein [Propionibacterium acnes HL110PA3]
 gi|315091710|gb|EFT63686.1| radical SAM domain protein [Propionibacterium acnes HL110PA4]
 gi|315103221|gb|EFT75197.1| radical SAM domain protein [Propionibacterium acnes HL050PA2]
 gi|315107018|gb|EFT78994.1| radical SAM domain protein [Propionibacterium acnes HL030PA1]
          Length = 650

 Score = 55.0 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 61/385 (15%), Positives = 114/385 (29%), Gaps = 52/385 (13%)

Query: 71  HIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGP 130
            +     E        IR+ K      G + L+V                  + +  +G 
Sbjct: 166 AVLGDGEEACLEISEIIRDWKKEGCPGGREGLLVRLAATGGIYVPSFYDVEYLDDGTIGK 225

Query: 131 QTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190
               RL            V+D D     K   + + +  + R       + I  GC + C
Sbjct: 226 VAPNRLEA--PYTVSKHTVMDLDEWQYPKRPIVPVAETVHERYS-----VEIFRGCTRGC 278

Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFSD 249
            FC           RS+  +       +   G+ E+ LL   +++     +       +D
Sbjct: 279 RFCQAGIITRPVRERSIDAIAQMVDGGLQATGLEEVGLLS--LSSADHSEISDITKGLAD 336

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
                      V L   ++     +  L             L    + GS+R+ + +N++
Sbjct: 337 RYE-----GTNVSLSLPSTRVDTFNIDLANELSRNGR-RSGLTFAPEGGSERMRRVINKQ 390

Query: 310 HTAYEYRQIIDR-----IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI------- 357
            T  +  + +        R V+        F+ G P ETD+D     D+   +       
Sbjct: 391 VTEEDLIRTVATAFGNGWRQVK------LYFMCGLPTETDEDVLGIYDMASHVIATGRAA 444

Query: 358 --GYAQAFSF---KYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLRE-------QQVSF 405
                   +     + P+  TP      Q   +    RL  L+  +R          + +
Sbjct: 445 AGRKDIRCTISIGGFVPKPHTP-FQWAAQASADEVDHRLSVLRDSIRADRQFGRSIGMRY 503

Query: 406 NDACVGQIIEVLIEKHGKEKGKLVG 430
           +D   G     +IE       + VG
Sbjct: 504 HDGRPG-----IIEGLLSRGDRRVG 523


>gi|253997627|ref|YP_003049691.1| lipoyl synthase [Methylotenera mobilis JLW8]
 gi|253984306|gb|ACT49164.1| lipoic acid synthetase [Methylotenera mobilis JLW8]
          Length = 320

 Score = 55.0 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 41/249 (16%), Positives = 88/249 (35%), Gaps = 18/249 (7%)

Query: 126 VVVGPQTYYRLPELL-ERARFGKRVVDT-----DYSVEDKFERLSIVDGGYNRKRGVTAF 179
           + + PQ   R P+ +  +   G+R  +      + ++    E  S  + G     G   F
Sbjct: 28  IKIIPQPVQRKPDWIRMKVPDGERYQEIKRVLRENNLHTVCEEASCPNIGECFSGGTATF 87

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
           + + + C + C FC V    G  +    ++  + AR +    +  + +   +    R   
Sbjct: 88  MILGDICTRRCPFCDV--AHGKPLPPDPNEPENLARTIAQMRLNYVVITSVD----RDDL 141

Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV-LMPYLHLPVQSG 298
           LDG    F D + ++ +    +R+       R   D  ++        +M +    +   
Sbjct: 142 LDGGAQHFVDCIQAVRKHSPNIRIEILVPDFRGRLDVAMEILRKAPPDVMNHNLETI--- 198

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
             R+ K             ++     + P +   S  ++G  GETD++  A M  +    
Sbjct: 199 -PRLYKQARPGSDYQNSLNLLKVFGEMYPHVPTKSGLMLGL-GETDEEILAVMQDLRAHN 256

Query: 359 YAQAFSFKY 367
            +     +Y
Sbjct: 257 VSMLTLGQY 265


>gi|145595843|ref|YP_001160140.1| lipoyl synthase [Salinispora tropica CNB-440]
 gi|145305180|gb|ABP55762.1| lipoic acid synthetase [Salinispora tropica CNB-440]
          Length = 331

 Score = 55.0 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 35/222 (15%), Positives = 75/222 (33%), Gaps = 24/222 (10%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC +   +  E      +       ++  G+   T+ G      R    DG   
Sbjct: 97  CTRRCDFCQIDTGKPAEF--DADEPRRVGESVVSMGLRYATITGV----ARDDLPDGGAW 150

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
            +++ +  +  ++    +         + + L +  G    ++ +    V     RI K 
Sbjct: 151 LYAETVRQIHALRPGCGVELLIPDFNAVPEQLTEVFGARPEVLGHNVETV----PRIFKR 206

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           +           +I + R+    +   S+ I+G  GE   +    +  + + G       
Sbjct: 207 IRPAFRYERSLDVIRQARAA--GLVTKSNLILGM-GEERAEISQALRDLHEAGCELITIT 263

Query: 366 KY---SPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVS 404
           +Y   SPR           V+  VK E  + L+++  E   +
Sbjct: 264 QYLRPSPRHH--------PVERWVKPEEFVELREEAEEIGYA 297


>gi|118443799|ref|YP_878291.1| bioB/LipA-like protein [Clostridium novyi NT]
 gi|118134255|gb|ABK61299.1| bioB/LipA-like protein [Clostridium novyi NT]
          Length = 359

 Score = 55.0 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 39/218 (17%), Positives = 76/218 (34%), Gaps = 18/218 (8%)

Query: 169 GYNRKRGVTAFLTIQEGCDKFCTFC-------VVPYTRGIEISRSLSQVVDEARKLIDNG 221
               +  +       EGC   C FC             G  +  ++ Q +   ++  +N 
Sbjct: 1   MKKNRHYIIPIFVPHEGCPHDCVFCNQNTITGTSNKVNGKFVEETIEQYLKTIKR--ENS 58

Query: 222 VCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAH 281
           + E++  G    A     +D EK      +    +  G +   + ++ P  + D +++  
Sbjct: 59  IVEVSFFGGTFTA-----IDIEKQNELLTVAKRYKDMGKIDYIHLSTRPDYIDDFILENL 113

Query: 282 GDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPG 341
                 +  + L VQS  D +L    R HT  +  +    I+    +  +    ++G PG
Sbjct: 114 KKYSADV--IELGVQSLDDEVLIKSGRGHTVEDVIKASKLIKKY--NFVLGLQMMLGLPG 169

Query: 342 ETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
           +T +    T   + KI    A  +       TP   M 
Sbjct: 170 DTFEKDIETAKKIIKIKPEIARIYPTLVVKNTPMEKMY 207


>gi|221067711|ref|ZP_03543816.1| oxygen-independent coproporphyrinogen III oxidase [Comamonas
           testosteroni KF-1]
 gi|220712734|gb|EED68102.1| oxygen-independent coproporphyrinogen III oxidase [Comamonas
           testosteroni KF-1]
          Length = 460

 Score = 55.0 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 30/190 (15%), Positives = 68/190 (35%), Gaps = 8/190 (4%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLS--QVVDEARKLIDNGVCEITLLGQ-NVNAWRGKGL-D 241
           C+  C +C           ++      +     +      +  L+ Q ++         D
Sbjct: 64  CESLCYYCACNKIVTKHHEKAAEYLDYLGRELAMHTEHCGKGQLVSQLHLGGGTPTFFSD 123

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
            E      L+    ++            PR +S+  +K   D+      L   VQ     
Sbjct: 124 AELQQLMLLMREHFKLDPAGEYSIEV-DPRTVSNERLKTLKDMG--FNRLSFGVQDFDPA 180

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
           + K+++R   A +  +++   R +   ++I+ D I G P +T + F  T+  V+++   +
Sbjct: 181 VQKAVHREQPAEQVFELVAEARRL-GFVSINVDLIYGLPKQTSESFARTLAQVNELRPDR 239

Query: 362 AFSFKYSPRL 371
              + Y+   
Sbjct: 240 IALYAYAHLP 249


>gi|51597793|ref|YP_071984.1| hypothetical protein YPTB3501 [Yersinia pseudotuberculosis IP
           32953]
 gi|153949697|ref|YP_001399461.1| radical SAM family protein [Yersinia pseudotuberculosis IP 31758]
 gi|153997331|ref|ZP_02022431.1| hypothetical protein YPE_3778 [Yersinia pestis CA88-4125]
 gi|165928099|ref|ZP_02223931.1| radical SAM protein, TIGR01212 family [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165937398|ref|ZP_02225961.1| radical SAM protein, TIGR01212 family [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166011299|ref|ZP_02232197.1| radical SAM protein, TIGR01212 family [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|167420787|ref|ZP_02312540.1| radical SAM protein, TIGR01212 family [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167426995|ref|ZP_02318748.1| radical SAM protein, TIGR01212 family [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|218930568|ref|YP_002348443.1| hypothetical protein YPO3556 [Yersinia pestis CO92]
 gi|229837085|ref|ZP_04457250.1| predicted Fe-S oxidoreductase [Yersinia pestis Pestoides A]
 gi|229839212|ref|ZP_04459371.1| predicted Fe-S oxidoreductase [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229899776|ref|ZP_04514917.1| predicted Fe-S oxidoreductase [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229904092|ref|ZP_04519203.1| predicted Fe-S oxidoreductase [Yersinia pestis Nepal516]
 gi|294505321|ref|YP_003569383.1| hypothetical protein YPZ3_3212 [Yersinia pestis Z176003]
 gi|51591075|emb|CAH22739.1| conserved hypothetical protein [Yersinia pseudotuberculosis IP
           32953]
 gi|115349179|emb|CAL22144.1| conserved hypothetical protein [Yersinia pestis CO92]
 gi|149288968|gb|EDM39048.1| hypothetical protein YPE_3778 [Yersinia pestis CA88-4125]
 gi|152961192|gb|ABS48653.1| radical SAM protein, TIGR01212 family [Yersinia pseudotuberculosis
           IP 31758]
 gi|165914503|gb|EDR33117.1| radical SAM protein, TIGR01212 family [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165919873|gb|EDR37174.1| radical SAM protein, TIGR01212 family [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165989683|gb|EDR41984.1| radical SAM protein, TIGR01212 family [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166961593|gb|EDR57614.1| radical SAM protein, TIGR01212 family [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167054035|gb|EDR63863.1| radical SAM protein, TIGR01212 family [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|229678210|gb|EEO74315.1| predicted Fe-S oxidoreductase [Yersinia pestis Nepal516]
 gi|229687268|gb|EEO79343.1| predicted Fe-S oxidoreductase [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229695578|gb|EEO85625.1| predicted Fe-S oxidoreductase [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229706028|gb|EEO92037.1| predicted Fe-S oxidoreductase [Yersinia pestis Pestoides A]
 gi|294355780|gb|ADE66121.1| hypothetical protein YPZ3_3212 [Yersinia pestis Z176003]
 gi|320017098|gb|ADW00670.1| putative Fe-S oxidoreductase [Yersinia pestis biovar Medievalis
           str. Harbin 35]
          Length = 307

 Score = 55.0 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/106 (27%), Positives = 42/106 (39%), Gaps = 11/106 (10%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +L L +Q+ +D+ LK +NR H    Y+Q   R R+    + +    IVG PGE     R 
Sbjct: 141 WLELGLQTANDKTLKRINRGHDFACYQQTARRARAR--GLKVCCHLIVGLPGEDRAQGRE 198

Query: 350 TMDLVDKIGYAQAFSFKYSPRLG-TPGSNMLEQVDENVKAERLLCL 394
           T++ V   G             G T             +A RL  L
Sbjct: 199 TLEKVVTTGVDGIKLHPLHIVEGSTMAKAW--------RAGRLTAL 236


>gi|319950004|ref|ZP_08023986.1| oxygen-independent coproporphyrinogen-III oxidase HemN [Dietzia
           cinnamea P4]
 gi|319436332|gb|EFV91470.1| oxygen-independent coproporphyrinogen-III oxidase HemN [Dietzia
           cinnamea P4]
          Length = 363

 Score = 55.0 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 31/124 (25%), Positives = 56/124 (45%), Gaps = 10/124 (8%)

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQII-DRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           + L +QS +  +L+ ++R HT    ++ + + +R+    + +  D I G PGETDDD   
Sbjct: 145 ISLGMQSTAAHVLRVLDRAHTPGRPQEAVAEALRAGFEHVNL--DVIYGTPGETDDDLAR 202

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTPGSN------MLEQVDENVKAERLLCLQKKLREQQV 403
           T+D V   G     ++      GT  +       M   VD +V A+R   +  +L     
Sbjct: 203 TLDAVVGAGVDHVSAYSLIVEDGTALARRIRRGEMPGTVD-DVLADRYEQVADRLARAGF 261

Query: 404 SFND 407
            + +
Sbjct: 262 HWYE 265


>gi|307321962|ref|ZP_07601343.1| lipoic acid synthetase [Sinorhizobium meliloti AK83]
 gi|306892386|gb|EFN23191.1| lipoic acid synthetase [Sinorhizobium meliloti AK83]
          Length = 322

 Score = 55.0 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 76/220 (34%), Gaps = 11/220 (5%)

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
           R +   + +    E     + G    +    F+ + E C + C FC V    G   +  L
Sbjct: 49  RSIVKSHKLVTVCEEAGCPNIGECWDKKHATFMIMGEICTRACAFCNV--ATGKPNALDL 106

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
            +  + A+ +   G+  + +   +    R    DG    F  +++++ E      +   T
Sbjct: 107 DEPANVAKAVKQMGLSHVVITSVD----RDDLDDGGAEHFEKVIFAIREASPETTIEILT 162

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
                    L +       +  +    V   S+ +      R+  +   +++ R++ + P
Sbjct: 163 PDFLRKPGALERVVAAKPDVFNHNLETV--PSNYLTVRPGARY--FHSIRLLQRVKELDP 218

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
            +   S  +VG  GE  ++    MD +           +Y
Sbjct: 219 TMFTKSGIMVGL-GEERNEVLQLMDDLRTADVDFLTIGQY 257


>gi|115374493|ref|ZP_01461774.1| radical SAM domain protein [Stigmatella aurantiaca DW4/3-1]
 gi|310817808|ref|YP_003950166.1| hypothetical protein STAUR_0535 [Stigmatella aurantiaca DW4/3-1]
 gi|115368472|gb|EAU67426.1| radical SAM domain protein [Stigmatella aurantiaca DW4/3-1]
 gi|309390880|gb|ADO68339.1| conserved uncharacterized protein [Stigmatella aurantiaca DW4/3-1]
          Length = 685

 Score = 55.0 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/154 (18%), Positives = 56/154 (36%), Gaps = 13/154 (8%)

Query: 173 KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS-RSLSQVVDEARKLIDNGVCEITLLGQN 231
           +   T  + +  GC   C FC  P+ +G  IS RSL  V+DE   L+ + +     +   
Sbjct: 210 RNPPTIAVEVARGCPYRCYFCTEPHVKGRRISYRSLDVVMDEVEFLLRHNLTRFWFVTSE 269

Query: 232 VNAWRGKGLDGEKCTFSDLLYSLSEIK---GLVRLRYTTSHPRDMSDCLIKAHGDLDVLM 288
           +N            T ++ +  L+E +    +    Y+     +    ++   G +  L 
Sbjct: 270 MNIGGSDFA----LTLAERILKLNEKRPHHPIEWSGYSLPMIPEADLRMLFRAGYVGALN 325

Query: 289 PYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
             L L      D  LK     + ++     +  +
Sbjct: 326 DVLSL-----DDDNLKRARVPYRSHHAVSFLKAM 354


>gi|312151490|gb|ADQ32257.1| lipoic acid synthetase [synthetic construct]
          Length = 372

 Score = 55.0 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 36/186 (19%), Positives = 67/186 (36%), Gaps = 15/186 (8%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLS--QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
           C + C FC V   R       L   +  + A+ + + G+  + L   +    R    DG 
Sbjct: 137 CTRGCRFCSVKTARNP---PPLDASEPYNTAKAIAEWGLDYVVLTSVD----RDDMPDGG 189

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPR-DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
               +  +  L E    + +   T   R D+      A   LDV    +    +  S   
Sbjct: 190 AEHIAKTVSYLKERNPKILVECLTPDFRGDLKAIEKVALSGLDVYAHNVETVPELQS--- 246

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
            K  + R    +  +++   + V+PD+   +  ++G  GE D+   ATM  + +      
Sbjct: 247 -KVRDPRVNFDQSLRVLKHAKKVQPDVISKTSIMLGL-GENDEQVYATMKALREADVDCL 304

Query: 363 FSFKYS 368
              +Y 
Sbjct: 305 TLGQYM 310


>gi|310821403|ref|YP_003953761.1| radical sam domain-containing protein [Stigmatella aurantiaca
           DW4/3-1]
 gi|309394475|gb|ADO71934.1| Radical SAM domain protein [Stigmatella aurantiaca DW4/3-1]
          Length = 664

 Score = 55.0 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 45/235 (19%), Positives = 82/235 (34%), Gaps = 38/235 (16%)

Query: 157 EDKFERLSIVDGGYNRKRGVTAFLTIQEGC----DKFCTFCVVPYTRGIEISRSLSQVVD 212
           +D FE +           G+   +    GC       CTFC +        S+S  +V+ 
Sbjct: 262 DDYFEEILSSPLRPFIFPGLA--METSRGCWWGKKHHCTFCGLNGGNMDFRSKSADRVIS 319

Query: 213 EARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL-VRLRYTTSHPR 271
           E  +               ++   G      K    D +  L+ I+ L  R+   T +  
Sbjct: 320 ELSE---------------LSTKYGI----RKFNIVDNIMDLAYIQDLAPRITSDTPYTL 360

Query: 272 DMSDCLIKAHGDLDVLM----PYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
                +      L+ +       L   V+S  D IL+ +++  TA +  Q++   R +  
Sbjct: 361 FFETKVNLKRAQLERIAAAGIRRLQPGVESMHDEILRLVDKGTTALQNIQLLKWAREI-- 418

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKI------GYAQAFSFKYSPRLGTPGS 376
            I I+ +F+   PGE D  +      +  +      G  +    ++SP    P S
Sbjct: 419 GIFITWNFLWDVPGEQDAWYGEMAAWLPWVTHLQPPGVDRIQFHRFSPYHQRPAS 473


>gi|294497361|ref|YP_003561061.1| oxygen-independent coproporphyrinogen III oxidase 2 [Bacillus
           megaterium QM B1551]
 gi|294347298|gb|ADE67627.1| oxygen-independent coproporphyrinogen III oxidase 2 [Bacillus
           megaterium QM B1551]
          Length = 499

 Score = 55.0 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 40/250 (16%), Positives = 83/250 (33%), Gaps = 19/250 (7%)

Query: 129 GPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
           G        EL E        ++    + D+  +L+ +   +  K  V+ ++ I   C  
Sbjct: 129 GKSKEQAHRELKEEYLITDDKINLMQHIVDR--QLAAIPDLHELKNEVSIYIGIPF-CPT 185

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQN----VNAWRGKGLDGEK 244
            C +C  P         S++  +      +         L  N       + G G     
Sbjct: 186 KCAYCTFPAYAINGRQGSVTSFLGGLHYEMREVGK---WLKDNNVKITTVYYGGGTPTSI 242

Query: 245 C------TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
                   + ++  S  +++ +  +      P  +++  +         +  + +  QS 
Sbjct: 243 TAEEMDMLYEEMYESFPDVQNIREITVEAGRPDTITEEKLAVL--NKWNIDRISVNPQSY 300

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
               LK++ R HT  E        R +  +  I+ D I+G P E  ++F+ T+D   K+ 
Sbjct: 301 IQETLKAIGRHHTVEETIDKFHLSRKMGMN-NINMDLIIGLPNEGVEEFQHTLDESKKLL 359

Query: 359 YAQAFSFKYS 368
                    S
Sbjct: 360 PESLTVHTLS 369


>gi|193214490|ref|YP_001995689.1| oxygen-independent coproporphyrinogen III oxidase [Chloroherpeton
           thalassium ATCC 35110]
 gi|193087967|gb|ACF13242.1| oxygen-independent coproporphyrinogen III oxidase [Chloroherpeton
           thalassium ATCC 35110]
          Length = 376

 Score = 55.0 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 40/233 (17%), Positives = 89/233 (38%), Gaps = 21/233 (9%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLG-QNVNAWRGKGLDGEK 244
           C + C +C   +T           +      L      + TL   + +      G     
Sbjct: 11  CRRRCHYCDFYFTTNAS------LIGRFLVGLEAEIFHKATLFENETIETIYFGGGTPSL 64

Query: 245 CTFSDLLYSLSEIKGLVRL-----RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
            + + +   L+      R+         ++P D+++  ++A       +  L L +QS  
Sbjct: 65  LSLAQIERVLALCFAHFRIAPAPEITLEANPEDLNEEKLQALASSP--VNRLSLGIQSFD 122

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
              LK ++R H+A E  +I    R+   +I I  D + G P E+ +D++  ++   +   
Sbjct: 123 AGKLKRLSRGHSAQESFEIASLARTFFRNINI--DLMFGTPDESLNDWQRELETALQFQP 180

Query: 360 AQAFSFKYSPRLGTPGSNM--LEQVD---ENVKAERLLCLQKKLREQQVSFND 407
               ++  +    T  ++   L ++    E+++ E  L + ++LRE      +
Sbjct: 181 EHLSTYSLTVEPKTLLAHDIGLGKIPAPNESLQVEMFLSVMRRLREAGYRHYE 233


>gi|169349533|ref|ZP_02866471.1| hypothetical protein CLOSPI_00260 [Clostridium spiroforme DSM 1552]
 gi|169293608|gb|EDS75741.1| hypothetical protein CLOSPI_00260 [Clostridium spiroforme DSM 1552]
          Length = 544

 Score = 55.0 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 54/291 (18%), Positives = 100/291 (34%), Gaps = 40/291 (13%)

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
           I+ L +   KE  +L++++ G     E +  L    I  V+ G      + + L      
Sbjct: 70  IKILCSKLKKENKELIIILGGPEVSYEIDYFLDNFDIDYVISG--EGEIVFKQLLDCLEN 127

Query: 147 KRVVDT-----------------DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKF 189
           K+ +D                  D S  +  E   ++            +     GC   
Sbjct: 128 KQPIDIQGVSSKDNRDYRQSKPVDLSYIESLESPYLLQRDLADMSKRVLYFETSRGCPYQ 187

Query: 190 CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSD 249
           C +C+    +G     SL  +  +   L+   V  I LL ++ NA     L   K  F +
Sbjct: 188 CQYCLSSLEKG-LRFFSLDYLKKQIDLLMKTDVKIIKLLDRSFNAKTEHALAILKYIFEN 246

Query: 250 LLYSLS---EIKGLVRLRYTTSHPRDMSDCLIKAHGDL-DVLMPYLHLPVQSGSDRILKS 305
               +    EI G V           +   +I    D     +    + +QS  +     
Sbjct: 247 YREGVQFQFEINGDV-----------LDQRIIDYINDYAPEGLLRFEIGIQSTYEPT-NE 294

Query: 306 MNRRHTAYEYRQIIDRIRSVR--PDIAISSDFIVGFPGETDDDFRATMDLV 354
           + +R+   +++++ + IR ++    I    D I G P E  + F  + D V
Sbjct: 295 IVKRY--QDFKRLSEVIRQLQTNHKIDFHLDLIAGLPLENLERFAKSFDDV 343


>gi|115379705|ref|ZP_01466783.1| radical SAM [Stigmatella aurantiaca DW4/3-1]
 gi|115363295|gb|EAU62452.1| radical SAM [Stigmatella aurantiaca DW4/3-1]
          Length = 666

 Score = 55.0 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 45/235 (19%), Positives = 82/235 (34%), Gaps = 38/235 (16%)

Query: 157 EDKFERLSIVDGGYNRKRGVTAFLTIQEGC----DKFCTFCVVPYTRGIEISRSLSQVVD 212
           +D FE +           G+   +    GC       CTFC +        S+S  +V+ 
Sbjct: 264 DDYFEEILSSPLRPFIFPGLA--METSRGCWWGKKHHCTFCGLNGGNMDFRSKSADRVIS 321

Query: 213 EARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL-VRLRYTTSHPR 271
           E  +               ++   G      K    D +  L+ I+ L  R+   T +  
Sbjct: 322 ELSE---------------LSTKYGI----RKFNIVDNIMDLAYIQDLAPRITSDTPYTL 362

Query: 272 DMSDCLIKAHGDLDVLM----PYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
                +      L+ +       L   V+S  D IL+ +++  TA +  Q++   R +  
Sbjct: 363 FFETKVNLKRAQLERIAAAGIRRLQPGVESMHDEILRLVDKGTTALQNIQLLKWAREI-- 420

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKI------GYAQAFSFKYSPRLGTPGS 376
            I I+ +F+   PGE D  +      +  +      G  +    ++SP    P S
Sbjct: 421 GIFITWNFLWDVPGEQDAWYGEMAAWLPWVTHLQPPGVDRIQFHRFSPYHQRPAS 475


>gi|297617819|ref|YP_003702978.1| oxygen-independent coproporphyrinogen III oxidase [Syntrophothermus
           lipocalidus DSM 12680]
 gi|297145656|gb|ADI02413.1| oxygen-independent coproporphyrinogen III oxidase [Syntrophothermus
           lipocalidus DSM 12680]
          Length = 378

 Score = 55.0 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 39/196 (19%), Positives = 66/196 (33%), Gaps = 15/196 (7%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C +C         +S     V    + L          L Q   A R   L G   
Sbjct: 12  CVRKCRYCDF-----YSVSYHEELVARYVKCLCAEIEERARDL-QQAEAVRTLYLGGGTP 65

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLH-------LPVQSG 298
           +  D    ++ I   +   +      +++  +     +L  +  Y H       L VQS 
Sbjct: 66  SLLD-PACVATIIDKIGSVFGILPEAEITLEVNPGTVNLKKMASYRHAGINRVSLGVQSF 124

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
            D IL+ + R H+  + +   D       D  IS D + G PG+    +R  +D    + 
Sbjct: 125 FDDILQWLGRLHSRQDVKTAFDVCLKAGFD-NISIDLMYGVPGQDLSRWREGLDNALALN 183

Query: 359 YAQAFSFKYSPRLGTP 374
                ++   P   TP
Sbjct: 184 PQHVSAYLLQPEADTP 199


>gi|257085436|ref|ZP_05579797.1| coproporphyrinogen III oxidase [Enterococcus faecalis Fly1]
 gi|256993466|gb|EEU80768.1| coproporphyrinogen III oxidase [Enterococcus faecalis Fly1]
          Length = 382

 Score = 55.0 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 49/254 (19%), Positives = 98/254 (38%), Gaps = 28/254 (11%)

Query: 177 TAFLTIQEGCDKFCTFCVV--PYTRGIEISRSLSQVVDEARKLI----DNGVCEITLLGQ 230
           +A++ I   C+  C +C     +  G  +   +  ++ E +       +  +  I + G 
Sbjct: 5   SAYIHIPF-CEHICYYCDFNKVFLEGQPVDEYIQSLLKEIQLTQALYPEQKMKTIYIGGG 63

Query: 231 NVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT-SHPRDMSDCLIKAHGDLDVLMP 289
              +   K LD        +   L       R  +T  ++P D++   ++   +    + 
Sbjct: 64  TPTSLSAKQLD---VLLKGVREQL---TFDDRNEFTVEANPGDLTQEKLQVMNNYG--VN 115

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI-RSVRPDIAISSDFIVGFPGETDDDFR 348
            L + VQ+  DR+LK + R+HTA +  + +  + +    +++I  D I   PG+T + FR
Sbjct: 116 RLSMGVQTFDDRLLKKIGRKHTAADVYETMKFLEKENFTNVSI--DLIYALPGQTLESFR 173

Query: 349 ATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE----QVDENVKA-----ERLLCLQKKLR 399
            T+     +       +       T   N +     Q+ E         E +  ++KK R
Sbjct: 174 DTLTRALALDLPHYSLYSLILENKTMFMNWVRQGRLQLPEEEIEAQMFDETIEAMEKKGR 233

Query: 400 EQQVSFNDACVGQI 413
            Q    N A  G+ 
Sbjct: 234 HQYEVSNFALTGKE 247


>gi|198275296|ref|ZP_03207827.1| hypothetical protein BACPLE_01455 [Bacteroides plebeius DSM 17135]
 gi|198271879|gb|EDY96149.1| hypothetical protein BACPLE_01455 [Bacteroides plebeius DSM 17135]
          Length = 348

 Score = 55.0 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 33/225 (14%), Positives = 70/225 (31%), Gaps = 37/225 (16%)

Query: 165 IVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR--SLSQVVDEARKLIDNGV 222
           +    +  K  +   + I   C   C +C +  +          +  ++   R   + G 
Sbjct: 41  VAQSHFGNKIYIRGLIEIGNCCHNDCFYCGIRKSNRHLKRYRLDVETILACCRHGYELGF 100

Query: 223 CEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHG 282
               L G   N                    ++E+   +R  +  +           + G
Sbjct: 101 RTFVLQGGEDNYMNDD--------------RVTEVVTAIRTEFPDAAIT-------LSLG 139

Query: 283 DLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII-------DRIRSV----RPDIAI 331
           +   L        Q+G++R L   +  H    YR++        +R+R +    R     
Sbjct: 140 ERPTL--SYERFFQAGANRYL-LRHETHNEAHYRRLHPEDMSLSNRLRCLNDLKRIGFQT 196

Query: 332 SSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
            +  +VG PG+T D     +  +++          + P   TP +
Sbjct: 197 GTGIMVGSPGQTVDHLVEDILFIEQFRPQMIGIGPFLPHHDTPFA 241


>gi|90580602|ref|ZP_01236407.1| putative Fe-S oxidoreductase [Vibrio angustum S14]
 gi|90438260|gb|EAS63446.1| putative Fe-S oxidoreductase [Photobacterium angustum S14]
          Length = 312

 Score = 55.0 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 31/103 (30%), Positives = 46/103 (44%), Gaps = 9/103 (8%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +L L +Q+ +++ LK +NR H    Y  I  R R++   I + +  IVG PG+T  D   
Sbjct: 141 WLELGLQTANEKTLKRINRGHDFACYAAITQRARAL--GIKVCTHLIVGLPGDTKADNID 198

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLL 392
           T++ V   G             G   S M     +  KAERL 
Sbjct: 199 TINKVVAAGVDGIKLHPLHIVEG---SKMG----QAFKAERLE 234


>gi|323695067|ref|ZP_08109210.1| radical SAM [Clostridium symbiosum WAL-14673]
 gi|323500869|gb|EGB16788.1| radical SAM [Clostridium symbiosum WAL-14673]
          Length = 365

 Score = 55.0 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/196 (14%), Positives = 56/196 (28%), Gaps = 25/196 (12%)

Query: 186 CDKFCTFCVVPYTR-GIEISR-SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
           C   C +C +       +  R +  +++         G     L G       G+     
Sbjct: 82  CRNNCYYCGIRRGNQNAQRYRLTADEILSCCENGYSLGFRTFVLQG-------GEDPAMT 134

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSD-CLIKAHGDLDVLMPYL----HLPVQSG 298
               +D++  + +      +  +     + +  CL  A  D  +L        H      
Sbjct: 135 DGWVADVIRRIKKEFPDCAVTLSLGEKSEAAYQCLFDAGADRYLLRHETADADHYGKLHP 194

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
               L      H     R +       R        F+VG PG+T +     M  + ++ 
Sbjct: 195 DGLSLA-----HRMECLRNL------KRIGFQTGCGFMVGSPGQTPECLAKDMAFIRELN 243

Query: 359 YAQAFSFKYSPRLGTP 374
                   + P+  TP
Sbjct: 244 PQMVGIGPFIPQHDTP 259


>gi|315426627|dbj|BAJ48254.1| Fe-S oxidoreductase [Candidatus Caldiarchaeum subterraneum]
          Length = 573

 Score = 55.0 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 37/214 (17%), Positives = 69/214 (32%), Gaps = 17/214 (7%)

Query: 159 KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLI 218
           ++    I D        ++    I  GC   C FC V  T          +VV+E    +
Sbjct: 232 RYRLPKIEDIPTIVNPAISGQAEIMRGCGIDCDFCEV--TTRPLRYYPPEKVVEEVLVNL 289

Query: 219 DNGVCEITLLGQNVNAWRGKG--LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDC 276
             G+     +  N  A+  +       K     L  ++ +        + T  P      
Sbjct: 290 RGGINNAWFVTDNQWAYMVRDPMFWPNKEAIFRLYRAVMQHVSKANPMHATLAPVAADPE 349

Query: 277 LIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE-----------YRQIIDRIRSV 325
                  +    P  H+ VQ G +     +  +H   +           + +I+   + V
Sbjct: 350 AAMGVAKIVGAGPDKHIGVQIGLETGSDKLVLKHMVNKAKPLKVGVDGTWAEIVVEAQKV 409

Query: 326 R--PDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
                   +   I+G  GETD+D   T+ L++ +
Sbjct: 410 YNAAYWIPAYTIILGQEGETDEDSWDTIGLINYM 443


>gi|313887538|ref|ZP_07821221.1| iron-only hydrogenase maturation rSAM protein HydE [Peptoniphilus
           harei ACS-146-V-Sch2b]
 gi|312846416|gb|EFR33794.1| iron-only hydrogenase maturation rSAM protein HydE [Peptoniphilus
           harei ACS-146-V-Sch2b]
          Length = 346

 Score = 55.0 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 40/263 (15%), Positives = 88/263 (33%), Gaps = 34/263 (12%)

Query: 176 VTAFLTIQEGCDKFCTFCVVPYTRG--IEISRSLSQVVDEARKLIDNGVCEITLLGQNVN 233
           +   + +   C   C +C + +       +  S  +++D A+  +D G+  I +      
Sbjct: 54  IRGLIEVSTYCKNNCYYCGLRFANKEAKRVRLSKEEILDLAKHSVDLGIKTIVM------ 107

Query: 234 AWRGKGLDGEKCTFSDLLYSLSEIKGLVR---LRYTTSHPRDMSDCLIKAHGDLDVLMPY 290
               +G + E  +   L   + EIK       +  +          ++K  G    L+ +
Sbjct: 108 ----QGGEDEFYSLEYLKEIIGEIKEKFSDVAITLSLGERDFKDFEVLKNMGADRYLLRH 163

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP-DIAISSDFIVGFPGETDDDFRA 349
                               ++  ++  ID I  ++          +VG P +  ++   
Sbjct: 164 ETYSKSH-------YERLHPSSMSFQHRIDSILKLKELGFQTGCGMMVGSPYQELENLYE 216

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQ--KKLREQQVSFND 407
            +  + K+         + P+  TP  +       +V    L  L   +   E+ +  + 
Sbjct: 217 DLKFILKLKPEMVGIGPFIPQHDTPFRDFEGGKLRDV----LNILSIVRIADEKLLLPST 272

Query: 408 ACVGQIIEVLIEKHGKEKGKLVG 430
             +G      I+  G+EKG L G
Sbjct: 273 TALGS-----IDDFGREKGILAG 290


>gi|237726628|ref|ZP_04557109.1| coproporphyrinogen III oxidase [Bacteroides sp. D4]
 gi|229435154|gb|EEO45231.1| coproporphyrinogen III oxidase [Bacteroides dorei 5_1_36/D4]
          Length = 376

 Score = 55.0 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 38/202 (18%), Positives = 69/202 (34%), Gaps = 15/202 (7%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR---GKGLDG 242
           C K C +C    T   E     + +     +L D    +  L G+ +       G     
Sbjct: 11  CKKRCIYCDFFSTTRKEQ--KTAYIRALCHELTD---RKNYLKGEPIETIYLGGGTPSQL 65

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPR--DMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300
            K  F  +   + ++  +      T      D++   I            + + +Q+  +
Sbjct: 66  AKEDFEAIFSHIYKVYKVTPNAEITLEANPDDLTSEYISMLRTFP--FNRISMGIQTFQE 123

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDI-AISSDFIVGFPGETDDDFRATMDLVDKIGY 359
             LK + RRHTA +  +     R+       IS D + G PGET   ++  +     +  
Sbjct: 124 TTLKQLQRRHTADQAIRAFQGCRTA--GFQNISIDLMYGLPGETLTSWKKDLKQALSLHP 181

Query: 360 AQAFSFKYSPRLGTPGSNMLEQ 381
               ++      GTP   + EQ
Sbjct: 182 EHISAYHLIYEEGTPLWKLREQ 203


>gi|114566312|ref|YP_753466.1| ELP3 component of the RNA polymerase II complex [Syntrophomonas
           wolfei subsp. wolfei str. Goettingen]
 gi|114337247|gb|ABI68095.1| ELP3 component of the RNA polymerase II complex [Syntrophomonas
           wolfei subsp. wolfei str. Goettingen]
          Length = 362

 Score = 55.0 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 36/202 (17%), Positives = 65/202 (32%), Gaps = 19/202 (9%)

Query: 185 GCDKFCTFC------VVPYTRGIEISRSLSQVVDEARKLIDNGVC-EITLLGQNVNAWRG 237
           GC   C FC            G      +  +V+     I  G   EI   G N      
Sbjct: 14  GCPFTCVFCDQNRISATQDIPGEM---EVLSIVENHLATIPAGSKVEIAFFGGNFTMVEK 70

Query: 238 KGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQS 297
              +    T +  L       G V+    ++ P  +   ++         +  + L VQS
Sbjct: 71  ARQEMYLATINRYLQ-----DGRVQGIRISTRPDGIDAQILDFLQQ--WGVRTIELGVQS 123

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
            SD +LK+  R + A +  +    I+       +    ++G PG+  +    T+  V ++
Sbjct: 124 LSDEVLKASWRGYQAADVFKACRLIKEY--GFRLGIQLMIGLPGDRLELDMKTVAKVIEL 181

Query: 358 GYAQAFSFKYSPRLGTPGSNML 379
                  +      GT    + 
Sbjct: 182 RPDMVRIYPTLVIAGTYLEKLY 203


>gi|86605525|ref|YP_474288.1| radical SAM domain-containing protein [Synechococcus sp. JA-3-3Ab]
 gi|86554067|gb|ABC99025.1| radical SAM domain protein [Synechococcus sp. JA-3-3Ab]
          Length = 879

 Score = 55.0 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 44/256 (17%), Positives = 87/256 (33%), Gaps = 36/256 (14%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGK 238
           + ++ GC + C FC                VV+   + +   G  E +L   + + +   
Sbjct: 265 MEVRRGCTRGCRFCQPGMLTRPARDVDPQAVVEAVVQGLRKTGYSEFSLSSLSCSDYLSL 324

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
              G +     L   ++            S   D  D  I A          L    ++G
Sbjct: 325 PAVGAELHNRLLGEHVA--------LSLPSQRVDRFDEQIAAIMKGSR-RSGLTFAPEAG 375

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA--ISSDFIVGFPGETDDD---FRATMDL 353
           + R+   +N+         +I  IR+   +    I   F++G PGETD D      T+++
Sbjct: 376 TQRLRDIINKG---LSDVDLIRGIRTAVQEGWDKIKLYFMIGLPGETDADVIGIARTVEM 432

Query: 354 V---------DKIGYAQAFSFKYSPRLGTPG-SNMLEQVDENVKA-------ERLLCLQK 396
           +          K+ +       + P+  TP   + ++  D   K         RL  ++ 
Sbjct: 433 LQRECAALGHKKVEFT-LTVSNFVPKPHTPFQWHRVDYADVQRKQALLQKELRRLRGVKA 491

Query: 397 KLREQQVSFNDACVGQ 412
              + + S  +  +G+
Sbjct: 492 HFTDIRFSILEDFIGK 507


>gi|46581419|ref|YP_012227.1| B12 binding /radical SAM domain-containing protein [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|46450841|gb|AAS97487.1| B12 binding domain protein/radical SAM domain protein
           [Desulfovibrio vulgaris str. Hildenborough]
 gi|311235076|gb|ADP87930.1| Radical SAM domain protein [Desulfovibrio vulgaris RCH1]
          Length = 481

 Score = 55.0 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 33/206 (16%), Positives = 63/206 (30%), Gaps = 18/206 (8%)

Query: 183 QEGCDKFCTFCVVPYTRGIE-------ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW 235
             GC   CT+C       +          RS+  ++ E R +I         +  +   +
Sbjct: 177 SRGCHFKCTYCFNHAYNAMYAGLGHVVRRRSVDHLIAEMRDVIARYPTSYIKISDDSFTY 236

Query: 236 RGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPV 295
           R            +       + GL       +         +        +   +    
Sbjct: 237 RVDSW------LEEFAEKYPRLIGLPFYCLLRADVVTRDMVRLLREAGCRSVCMSIEAGA 290

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
           ++    +L   NRR +  +  +  D        IAI ++ ++  P  T  D  AT+DL  
Sbjct: 291 ETVRRDVL---NRRVSNEKIIESFDLFNEA--GIAIYTNSMLAMPRATLADDIATLDLNI 345

Query: 356 KIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +           +P  GT   +M E+
Sbjct: 346 RCRPTLGHFTIMAPFPGTRIHDMCEK 371


>gi|195495886|ref|XP_002095457.1| GE22400 [Drosophila yakuba]
 gi|306755873|sp|B4PF83|LIAS2_DROYA RecName: Full=Lipoyl synthase 2, mitochondrial; AltName:
           Full=Lipoate synthase 2; Short=LS 2; Short=Lip-syn 2;
           AltName: Full=Lipoic acid synthase 2; Flags: Precursor
 gi|194181558|gb|EDW95169.1| GE22400 [Drosophila yakuba]
          Length = 379

 Score = 55.0 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/186 (14%), Positives = 63/186 (33%), Gaps = 15/186 (8%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQV---VDEARKLIDNGVCEITLLGQNVNAWRGKGLDG 242
           C + C FC V   R          V   V+ A  +   G+  I L   +    R    DG
Sbjct: 137 CTRGCRFCSVKTARKP----PPLDVNEPVNTATAIASWGLDYIVLTSVD----RDDLPDG 188

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
                ++ +  +      + +       R  +   ++   +  + +   ++         
Sbjct: 189 GSKHIAETVREIKARNSNIFVECLVPDFRG-NLECVETIANSGLDVYAHNIETVEKLTPY 247

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           ++     +   +  Q++   +   P++   S  ++G  GETD++  +T+  +   G    
Sbjct: 248 VRDRRAHYR--QTLQVLTEAKRFNPNLITKSSIMLGL-GETDEEIESTLKDLRTAGVDCV 304

Query: 363 FSFKYS 368
              +Y 
Sbjct: 305 TLGQYM 310


>gi|16764010|ref|NP_459625.1| lipoyl synthase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|29142635|ref|NP_805977.1| lipoyl synthase [Salmonella enterica subsp. enterica serovar Typhi
           str. Ty2]
 gi|56414232|ref|YP_151307.1| lipoyl synthase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|62179232|ref|YP_215649.1| lipoyl synthase [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|161615154|ref|YP_001589119.1| lipoyl synthase [Salmonella enterica subsp. enterica serovar
           Paratyphi B str. SPB7]
 gi|167550833|ref|ZP_02344589.1| lipoic acid synthetase [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|167990636|ref|ZP_02571736.1| lipoic acid synthetase [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|168231642|ref|ZP_02656700.1| lipoic acid synthetase [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
 gi|168236622|ref|ZP_02661680.1| lipoic acid synthetase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|168240477|ref|ZP_02665409.1| lipoic acid synthetase [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|168465804|ref|ZP_02699686.1| lipoic acid synthetase [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
 gi|194443853|ref|YP_002039874.1| lipoyl synthase [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|194450099|ref|YP_002044666.1| lipoyl synthase [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|194468843|ref|ZP_03074827.1| lipoic acid synthetase [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|194735111|ref|YP_002113750.1| lipoyl synthase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197249062|ref|YP_002145607.1| lipoyl synthase [Salmonella enterica subsp. enterica serovar Agona
           str. SL483]
 gi|197265804|ref|ZP_03165878.1| lipoic acid synthetase [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|197363155|ref|YP_002142792.1| lipoyl synthase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|198243379|ref|YP_002214621.1| lipoyl synthase [Salmonella enterica subsp. enterica serovar Dublin
           str. CT_02021853]
 gi|200390297|ref|ZP_03216908.1| lipoic acid synthetase [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|204930598|ref|ZP_03221528.1| lipoic acid synthetase [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
 gi|205351921|ref|YP_002225722.1| lipoyl synthase [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|207856099|ref|YP_002242750.1| lipoyl synthase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|213053411|ref|ZP_03346289.1| lipoyl synthase [Salmonella enterica subsp. enterica serovar Typhi
           str. E00-7866]
 gi|213425104|ref|ZP_03357854.1| lipoyl synthase [Salmonella enterica subsp. enterica serovar Typhi
           str. E02-1180]
 gi|213609712|ref|ZP_03369538.1| lipoyl synthase [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-2068]
 gi|213857362|ref|ZP_03384333.1| lipoyl synthase [Salmonella enterica subsp. enterica serovar Typhi
           str. M223]
 gi|224582468|ref|YP_002636266.1| lipoyl synthase [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|238911583|ref|ZP_04655420.1| lipoyl synthase [Salmonella enterica subsp. enterica serovar
           Tennessee str. CDC07-0191]
 gi|289810722|ref|ZP_06541351.1| lipoyl synthase [Salmonella enterica subsp. enterica serovar Typhi
           str. AG3]
 gi|289826920|ref|ZP_06545806.1| lipoyl synthase [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-3139]
 gi|22001769|sp|Q8ZR04|LIPA_SALTY RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|75484452|sp|Q57RU3|LIPA_SALCH RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|81599795|sp|Q5PM97|LIPA_SALPA RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|189046677|sp|A9MV74|LIPA_SALPB RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|226781796|sp|B5EZ72|LIPA_SALA4 RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|226781797|sp|B5FMM8|LIPA_SALDC RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|226781798|sp|B5QVN4|LIPA_SALEP RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|226781799|sp|B5R7Y1|LIPA_SALG2 RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|238689937|sp|B5BCG1|LIPA_SALPK RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|238690237|sp|B4TAI5|LIPA_SALHS RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|238690709|sp|B4TPA3|LIPA_SALSV RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|238693557|sp|B4SYJ0|LIPA_SALNS RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|254809200|sp|C0PW62|LIPA_SALPC RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|16419145|gb|AAL19584.1| lipoate synthase, an iron-sulfur enzyme [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|29138266|gb|AAO69837.1| lipoic acid synthetase [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
 gi|56128489|gb|AAV77995.1| lipoic acid synthetase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|62126865|gb|AAX64568.1| lipoate synthase, an iron-sulfur enzyme [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|161364518|gb|ABX68286.1| hypothetical protein SPAB_02922 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194402516|gb|ACF62738.1| lipoic acid synthetase [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|194408403|gb|ACF68622.1| lipoic acid synthetase [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|194455207|gb|EDX44046.1| lipoic acid synthetase [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|194710613|gb|ACF89834.1| lipoic acid synthetase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|195631619|gb|EDX50139.1| lipoic acid synthetase [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
 gi|197094632|emb|CAR60154.1| lipoic acid synthetase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|197212765|gb|ACH50162.1| lipoic acid synthetase [Salmonella enterica subsp. enterica serovar
           Agona str. SL483]
 gi|197244059|gb|EDY26679.1| lipoic acid synthetase [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|197290381|gb|EDY29737.1| lipoic acid synthetase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|197937895|gb|ACH75228.1| lipoic acid synthetase [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|199602742|gb|EDZ01288.1| lipoic acid synthetase [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|204320532|gb|EDZ05735.1| lipoic acid synthetase [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
 gi|205271702|emb|CAR36533.1| lipoic acid synthetase [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|205324281|gb|EDZ12120.1| lipoic acid synthetase [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|205330897|gb|EDZ17661.1| lipoic acid synthetase [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|205334098|gb|EDZ20862.1| lipoic acid synthetase [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
 gi|205340243|gb|EDZ27007.1| lipoic acid synthetase [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|206707902|emb|CAR32190.1| lipoic acid synthetase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|224466995|gb|ACN44825.1| lipoyl synthase [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|261245906|emb|CBG23707.1| lipoic acid synthetase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. D23580]
 gi|267992364|gb|ACY87249.1| lipoyl synthase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 14028S]
 gi|301157234|emb|CBW16721.1| lipoic acid synthetase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. SL1344]
 gi|312911664|dbj|BAJ35638.1| lipoyl synthase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. T000240]
 gi|320084902|emb|CBY94692.1| lipoic acid synthetase [Salmonella enterica subsp. enterica serovar
           Weltevreden str. 2007-60-3289-1]
 gi|321226212|gb|EFX51263.1| Lipoate synthase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. TN061786]
 gi|322613235|gb|EFY10178.1| lipoyl synthase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315996572]
 gi|322621303|gb|EFY18160.1| lipoyl synthase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-1]
 gi|322623723|gb|EFY20561.1| lipoyl synthase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-3]
 gi|322628995|gb|EFY25774.1| lipoyl synthase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-4]
 gi|322631717|gb|EFY28471.1| lipoyl synthase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-1]
 gi|322637547|gb|EFY34249.1| lipoyl synthase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-2]
 gi|322641887|gb|EFY38517.1| lipoyl synthase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 531954]
 gi|322646731|gb|EFY43237.1| lipoyl synthase [Salmonella enterica subsp. enterica serovar
           Montevideo str. NC_MB110209-0054]
 gi|322651432|gb|EFY47812.1| lipoyl synthase [Salmonella enterica subsp. enterica serovar
           Montevideo str. OH_2009072675]
 gi|322653117|gb|EFY49451.1| lipoyl synthase [Salmonella enterica subsp. enterica serovar
           Montevideo str. CASC_09SCPH15965]
 gi|322658837|gb|EFY55092.1| lipoyl synthase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 19N]
 gi|322664893|gb|EFY61086.1| lipoyl synthase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 81038-01]
 gi|322668895|gb|EFY65047.1| lipoyl synthase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MD_MDA09249507]
 gi|322670599|gb|EFY66732.1| lipoyl synthase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 414877]
 gi|322675340|gb|EFY71416.1| lipoyl synthase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 366867]
 gi|322682189|gb|EFY78214.1| lipoyl synthase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 413180]
 gi|322684981|gb|EFY80978.1| lipoyl synthase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 446600]
 gi|322713697|gb|EFZ05268.1| lipoyl synthase [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. A50]
 gi|323128950|gb|ADX16380.1| lipoyl synthase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 4/74]
 gi|323193960|gb|EFZ79162.1| lipoyl synthase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609458-1]
 gi|323197948|gb|EFZ83070.1| lipoyl synthase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556150-1]
 gi|323202005|gb|EFZ87065.1| lipoyl synthase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609460]
 gi|323207138|gb|EFZ92091.1| lipoyl synthase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 507440-20]
 gi|323210403|gb|EFZ95294.1| lipoyl synthase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556152]
 gi|323214335|gb|EFZ99086.1| lipoyl synthase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB101509-0077]
 gi|323221486|gb|EGA05900.1| lipoyl synthase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB102109-0047]
 gi|323225530|gb|EGA09760.1| lipoyl synthase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB110209-0055]
 gi|323231088|gb|EGA15204.1| lipoyl synthase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB111609-0052]
 gi|323234080|gb|EGA18169.1| lipoyl synthase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009083312]
 gi|323238225|gb|EGA22283.1| lipoyl synthase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009085258]
 gi|323242541|gb|EGA26565.1| lipoyl synthase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315731156]
 gi|323248482|gb|EGA32416.1| lipoyl synthase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2009159199]
 gi|323251302|gb|EGA35174.1| lipoyl synthase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008282]
 gi|323259230|gb|EGA42873.1| lipoyl synthase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008283]
 gi|323261638|gb|EGA45213.1| lipoyl synthase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008284]
 gi|323264820|gb|EGA48321.1| lipoyl synthase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008285]
 gi|323272343|gb|EGA55750.1| lipoyl synthase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008287]
 gi|326622376|gb|EGE28721.1| lipoyl synthase [Salmonella enterica subsp. enterica serovar Dublin
           str. 3246]
 gi|326626960|gb|EGE33303.1| lipoyl synthase [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 9]
 gi|332987578|gb|AEF06561.1| lipoyl synthase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. UK-1]
          Length = 321

 Score = 55.0 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 42/258 (16%), Positives = 85/258 (32%), Gaps = 19/258 (7%)

Query: 118 LRRSPIVNVVVGPQTYYRLPELLERAR-------FGKRVVDTDYSVEDKFERLSIVDGGY 170
           +   P+ NVV       R PE ++           G +       +    E  S  +   
Sbjct: 19  MALIPVKNVVTERDALLRKPEWMKIKLPADSTRIQGIKAAMRKNGLHSVCEEASCPNLAE 78

Query: 171 NRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQ 230
               G   F+ +   C + C FC V    G  ++    +    A+ + D  +  + +   
Sbjct: 79  CFNHGTATFMILGAICTRRCPFCDV--AHGRPVAPDAEEPQKLAQTIADMALRYVVITSV 136

Query: 231 NVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAH-GDLDVLMP 289
           +    R    DG    F+D + ++      +++       R   D  +         +  
Sbjct: 137 D----RDDLRDGGAQHFADCITAIRAKSPEIKIETLVPDFRGRMDRALDILNATPPDVFN 192

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +    V     RI + +          ++++R +   P+I   S  +VG  GET+ +   
Sbjct: 193 HNLENV----PRIYRQVRPGADYNWSLKLLERFKEAHPEIPTKSGLMVGL-GETNAEIIE 247

Query: 350 TMDLVDKIGYAQAFSFKY 367
            M  + + G       +Y
Sbjct: 248 VMRDLRRHGVTMLTLGQY 265


>gi|332670726|ref|YP_004453734.1| lipoic acid synthetase [Cellulomonas fimi ATCC 484]
 gi|332339764|gb|AEE46347.1| lipoic acid synthetase [Cellulomonas fimi ATCC 484]
          Length = 333

 Score = 55.0 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 47/297 (15%), Positives = 106/297 (35%), Gaps = 30/297 (10%)

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQ-EGCDKFCTFCVVPYTRGIEISRSLSQVVD 212
           ++V ++    +I +   +R+    A   I  + C + C FC +    G        +   
Sbjct: 52  HTVCEEAGCPNIFECWEDRE----ATFLIGGDQCTRRCDFCQI--DTGKPADFDADEPRR 105

Query: 213 EARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
            A  +   G+   T+ G      R    DG    +++ +  +  +     +         
Sbjct: 106 VAASVQAMGLKYATVTGV----ARDDLPDGGAWLYAETVRQIHAVNPGTGVELLIPDFNA 161

Query: 273 MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAIS 332
           + + L + +     ++ +    V     RI K +           ++ R R     +   
Sbjct: 162 VPELLDQVNESRPEVLAHNLETV----PRIFKQIRPGFRYERSLSVLTRAREA--GLVTK 215

Query: 333 SDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLL 392
           S+ I+G  GET D+ +A +  +   G       +Y  R     S     VD  V+ E  +
Sbjct: 216 SNLILGM-GETIDEVKAALRDLVDAGCDLVTITQYL-RP----SLRHHPVDRWVRPEEFV 269

Query: 393 CLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGD 449
            L +  +E         +G ++   + +     G+L G++   + + + +   ++G+
Sbjct: 270 ELSEHAQEL------GFLG-VMSGPLVRSSYRAGRLWGQAMRHRGIEIPAALAHLGE 319


>gi|323691880|ref|ZP_08106134.1| radical SAM domain-containing protein [Clostridium symbiosum
           WAL-14673]
 gi|323504087|gb|EGB19895.1| radical SAM domain-containing protein [Clostridium symbiosum
           WAL-14673]
          Length = 651

 Score = 55.0 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 46/301 (15%), Positives = 95/301 (31%), Gaps = 51/301 (16%)

Query: 125 NVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKF--ERLSIVDGGYNRKRGVTAFLTI 182
           +   G +      E L   +       ++  ++D +    +      Y    G+ A   +
Sbjct: 239 DAFSGRRLVEPYGEHLYVVQNPAARPLSEEEMDDVYALPYMRNYHPSYEAAGGIPAITEV 298

Query: 183 ------QEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEAR----------KLIDNGVCEI 225
                   GC   C+FC + + +G  + +RS   +V+EA            + D G    
Sbjct: 299 KFSLISNRGCFGGCSFCALTFHQGRIVQTRSHESIVNEAELLTKEPDFKGYIHDVGGPTA 358

Query: 226 TLLGQNVNAWR---------------GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270
                +                     + L+ +   +  LL  L EI  + ++   +   
Sbjct: 359 NFRHPSCEKQMKAGVCPEKQCLFPKPCRNLNADHSDYISLLKKLREIPKVKKVFIRS--G 416

Query: 271 RDMSDCLIKA-HGDLDVLMPY-----LHLPVQSGSDRILKSMNRR----HTAYE--YRQI 318
                 L    H  L  L  Y     L +  +  SD +LK M +     +  +   Y ++
Sbjct: 417 IRFDYLLADPGHAFLKELCEYHVSGQLKVAPEHISDNVLKRMGKPENSVYRRFMKEYEKM 476

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
            +++   +    +    +   PG T  +     + +  +GY       + P   T  + M
Sbjct: 477 NEKLGKKQY---LVPYLMSSHPGSTLTEAVELAEYLRDLGYMPEQVQDFYPTPSTLSTCM 533

Query: 379 L 379
            
Sbjct: 534 Y 534


>gi|261343562|ref|ZP_05971207.1| lipoyl synthase [Providencia rustigianii DSM 4541]
 gi|282568711|gb|EFB74246.1| lipoyl synthase [Providencia rustigianii DSM 4541]
          Length = 321

 Score = 55.0 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 42/258 (16%), Positives = 89/258 (34%), Gaps = 19/258 (7%)

Query: 118 LRRSPIVNVVVGPQTYYRLPELLERAR-------FGKRVVDTDYSVEDKFERLSIVDGGY 170
           +   P+ NVV   +   R PE ++           G +       +    E  S  +   
Sbjct: 19  MALIPVKNVVTEREEILRKPEWMKIRLPADSTRIQGIKAAMRKNGLHSVCEEASCPNLSE 78

Query: 171 NRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQ 230
               G   F+ +   C + C FC V    G   +   ++ V  A+ + D  +  + +   
Sbjct: 79  CFNHGTATFMILGAICTRRCPFCDV--AHGRPNAPDANEPVKLAQTIKDMALRYVVITSV 136

Query: 231 NVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAH-GDLDVLMP 289
           +    R    DG    F+D + ++ E    +++       R   D  ++        +  
Sbjct: 137 D----RDDLRDGGAQHFADCISAIREKNPTIKIETLVPDFRGRMDRALEILTATPPDVFN 192

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +    V     R+ + +          +++++ +   P+I   S  +VG  GET+ +   
Sbjct: 193 HNLENV----PRVYRQVRPGANYEWSLKLLEKFKEAHPEIPTKSGLMVGL-GETNAEIIE 247

Query: 350 TMDLVDKIGYAQAFSFKY 367
            M  + + G       +Y
Sbjct: 248 VMRDLRRHGVTMLTLGQY 265


>gi|159039101|ref|YP_001538354.1| lipoyl synthase [Salinispora arenicola CNS-205]
 gi|157917936|gb|ABV99363.1| lipoic acid synthetase [Salinispora arenicola CNS-205]
          Length = 329

 Score = 55.0 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 36/219 (16%), Positives = 73/219 (33%), Gaps = 24/219 (10%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC +   +  E      +    A  ++  G+   T+ G      R    DG   
Sbjct: 95  CTRRCDFCQIDTGKPAEF--DADEPRRVAESVVSMGLRYATITGV----ARDDLPDGGAW 148

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
            +++ +  +  ++    +         +   L +  G    ++ +    V     RI K 
Sbjct: 149 LYAETVRQIHALRPGCGVELLIPDFNAVPAQLAEVFGARPEVLAHNVETV----PRIFKR 204

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           +           +I + R+    +   S+ I+G  GE   +    +  +   G       
Sbjct: 205 IRPAFRYERSLDVIRQARAA--GLVTKSNLILGM-GEERTEISQALRDLHGAGCELITIT 261

Query: 366 KY---SPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQ 401
           +Y   SPR           V+  VK E  + L+++  E 
Sbjct: 262 QYLRPSPRHH--------PVERWVKPEEFVELREEAEEI 292


>gi|145595970|ref|YP_001160267.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Salinispora tropica CNB-440]
 gi|145305307|gb|ABP55889.1| coproporphyrinogen III oxidase, anaerobic [Salinispora tropica
           CNB-440]
          Length = 407

 Score = 55.0 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 74/221 (33%), Gaps = 22/221 (9%)

Query: 186 CDKFCTFCVVPYTRGIE----ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD 241
           C   C +C        E     SR      + A  ++        +LG+N  +       
Sbjct: 39  CASRCGYCDFNTYTAAELGGGASRE-----EYADTVLAELALAARVLGENRPSRVDTVFV 93

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDC-------LIKAHGDLDVLMPYLHLP 294
           G           L+ I   +   +  +   +++                       + L 
Sbjct: 94  GGGTPTLLPAADLARILDAIDRTWGLATDAEVTTEANPESVTPRSLAALRAAGYTRISLG 153

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           +QS S  +L  ++RRH+A          R    D  ++ D I G PGE+  DF A++D V
Sbjct: 154 MQSASPGVLAILDRRHSAGRAIAAAGEAREAGFD-HVNLDLIYGTPGESAADFAASLDEV 212

Query: 355 DKIGYAQAFSFKYSPRLGTPGSNMLE-----QVDENVKAER 390
              G     ++      GT  +  +      Q  ++V A+R
Sbjct: 213 VAAGVDHVSAYSLIVEEGTRLAAQVRRGEVAQPCDDVAADR 253


>gi|71905929|ref|YP_283516.1| lipoyl synthase [Dechloromonas aromatica RCB]
 gi|123774557|sp|Q47JD5|LIPA_DECAR RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|71845550|gb|AAZ45046.1| Lipoate synthase [Dechloromonas aromatica RCB]
          Length = 314

 Score = 55.0 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 44/249 (17%), Positives = 90/249 (36%), Gaps = 19/249 (7%)

Query: 127 VVGPQTYYRLPELLE------RARFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAF 179
           +V   T  R PE +         RFG+ + +  +  +    E  +  + G    RG   F
Sbjct: 21  IVPVDTPLRKPEWIRVKAGNSAGRFGEIKSMLREKKLHTVCEEAACPNIGECFGRGTATF 80

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
           + + + C + C FC V + + +    + ++  + A  +    +  + +   +    R   
Sbjct: 81  MILGDICTRRCPFCDVGHGQPLP--PNPNEPAELADSVSSLKLQYVVITSVD----RDDL 134

Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGD-LDVLMPYLHLPVQSG 298
            DG    F D++ ++ E      +       R   D  I   G+ L  ++ +    V   
Sbjct: 135 RDGGAQHFVDVVRAVREASPKTTIETLVPDFRGRMDIAIDILGNGLPDVLNHNMETV--- 191

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
             R+ K             ++ + ++  PD+   S  +VG  GETD++    M  +    
Sbjct: 192 -PRLYKQARPGADYAHSLALMKQFKARYPDVKTKSGLMVGL-GETDEEILEVMRDLRAND 249

Query: 359 YAQAFSFKY 367
                  +Y
Sbjct: 250 VEMLTIGQY 258


>gi|237712438|ref|ZP_04542919.1| coproporphyrinogen III oxidase [Bacteroides sp. 9_1_42FAA]
 gi|229453759|gb|EEO59480.1| coproporphyrinogen III oxidase [Bacteroides sp. 9_1_42FAA]
          Length = 376

 Score = 54.6 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 38/202 (18%), Positives = 69/202 (34%), Gaps = 15/202 (7%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR---GKGLDG 242
           C K C +C    T   E     + +     +L D    +  L G+ +       G     
Sbjct: 11  CKKRCIYCDFFSTTRKEQ--KTAYIRALCHELTD---RKDYLKGEPIETIYLGGGTPSQL 65

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPR--DMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300
            K  F  +   + ++  +      T      D++   I            + + +Q+  +
Sbjct: 66  AKEDFEAIFSHIYKVYKVTPNAEITLEANPDDLTSEYISMLRTFP--FNRISMGIQTFQE 123

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDI-AISSDFIVGFPGETDDDFRATMDLVDKIGY 359
             LK + RRHTA +  +     R+       IS D + G PGET   ++  +     +  
Sbjct: 124 TTLKQLQRRHTADQAIRAFQGCRTA--GFQNISIDLMYGLPGETLTSWKKDLKQALSLHP 181

Query: 360 AQAFSFKYSPRLGTPGSNMLEQ 381
               ++      GTP   + EQ
Sbjct: 182 EHISAYHLIYEEGTPLWKLREQ 203


>gi|148380914|ref|YP_001255455.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Clostridium botulinum A str. ATCC 3502]
 gi|148290398|emb|CAL84525.1| oxygen-independent coproporphyrinogen iii oxidase [Clostridium
           botulinum A str. ATCC 3502]
          Length = 383

 Score = 54.6 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 33/199 (16%), Positives = 74/199 (37%), Gaps = 14/199 (7%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C++C        E    +  V   ++++++N   +I      +    G        
Sbjct: 22  CMQKCSYCDFTSYSKKE-DLMMEYVKALSKEIVNNTKNKIIKT---IFIGGGTPTYLSLE 77

Query: 246 TFSDLLYSLSEIKGLVRLRYTTS----HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
             + L  +L  I     + +T         +    L+K+ G     +  L + +QS  + 
Sbjct: 78  ALNILKNTLKTIDKKENIEFTVEGNPGTFTEKKLKLLKSMG-----VNRLSIGLQSSKNS 132

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
           +LK++ R H+  ++       R    +  I+ D +   P ++ DD++ T+  V  +    
Sbjct: 133 LLKTLGRIHSFEDFAHSFKMARKEGFN-NINVDLMFALPNQSLDDWKETLLTVVGLSPEH 191

Query: 362 AFSFKYSPRLGTPGSNMLE 380
              +      GT   N+ +
Sbjct: 192 LSCYSLIIEEGTNFYNLYK 210


>gi|238789736|ref|ZP_04633518.1| hypothetical protein yfred0001_28850 [Yersinia frederiksenii ATCC
           33641]
 gi|238722095|gb|EEQ13753.1| hypothetical protein yfred0001_28850 [Yersinia frederiksenii ATCC
           33641]
          Length = 309

 Score = 54.6 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 46/121 (38%), Gaps = 12/121 (9%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +L L +Q+ +D+ LK +NR H    Y+Q   R R+    + +    IVG PGE       
Sbjct: 141 WLELGLQTANDKTLKRINRGHDFACYQQTARRARAR--GLKVCCHLIVGLPGEDQAQGME 198

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDAC 409
           T++ V   G             G+  +          KA R   L +   E+ V      
Sbjct: 199 TLEKVVATGVDGLKLHPLHIVEGSTMA----------KAWRAGRLPELALEEYVVTAGEM 248

Query: 410 V 410
           +
Sbjct: 249 I 249


>gi|33241119|ref|NP_876061.1| lipoyl synthase [Prochlorococcus marinus subsp. marinus str.
           CCMP1375]
 gi|47115734|sp|Q7V9Z9|LIPA1_PROMA RecName: Full=Lipoyl synthase 1; AltName: Full=Lip-syn 1; AltName:
           Full=Lipoate synthase 1; AltName: Full=Lipoic acid
           synthase 1; AltName: Full=Sulfur insertion protein lipA1
 gi|33238649|gb|AAQ00714.1| Lipoate synthase [Prochlorococcus marinus subsp. marinus str.
           CCMP1375]
          Length = 294

 Score = 54.6 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 40/248 (16%), Positives = 80/248 (32%), Gaps = 16/248 (6%)

Query: 132 TYYRLPELLERARFGKRV-----VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGC 186
             ++   L  +A   +R+     + +D ++    +  S  + G     G   FL +  GC
Sbjct: 5   NTHKPDWLRVKAPQHERIGYVADLLSDLNLNTVCQEASCPNIGECFAGGTATFLIMGPGC 64

Query: 187 DKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT 246
            + C +C +        S   S+       +   G+  + +   N    R    DG    
Sbjct: 65  TRACPYCDI-DFDKSVRSLDPSEPERLGEAVKRLGLKHVVITSVN----RDDLEDGGASQ 119

Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306
           F   + ++        +           D   K       ++ +    V     R+ K  
Sbjct: 120 FVSCIDAVRASSVETTIELLIPDFCGNWDAFKKVMNASPNVLNHNIETV----PRLYKRA 175

Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
             +       +++ R+R   P++   S  +VG  GETDD+    +  +           +
Sbjct: 176 RPQGLYKRSLELLRRVRQESPNVYSKSGLMVGL-GETDDEVLQVLSDLHDNNVDIVTIGQ 234

Query: 367 YSPRLGTP 374
           Y    GT 
Sbjct: 235 YL-SPGTK 241


>gi|322807281|emb|CBZ04855.1| putative coproporphyrinogen III oxidase of BS HemN-type,
           oxygen-independent [Clostridium botulinum H04402 065]
          Length = 380

 Score = 54.6 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 33/199 (16%), Positives = 74/199 (37%), Gaps = 14/199 (7%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C++C        E    +  V   ++++++N   +I      +    G        
Sbjct: 19  CMQKCSYCDFTSYSKKE-DLMMEYVKALSKEIVNNTKNKIIKT---IFIGGGTPTYLSLE 74

Query: 246 TFSDLLYSLSEIKGLVRLRYTTS----HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
             + L  +L  I     + +T         +    L+K+ G     +  L + +QS  + 
Sbjct: 75  ALNILKNTLKTIDKKENIEFTVEGNPGTFTEKKLKLLKSMG-----VNRLSIGLQSSKNS 129

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
           +LK++ R H+  ++       R    +  I+ D +   P ++ DD++ T+  V  +    
Sbjct: 130 LLKTLGRIHSFEDFAHSFKMARKEGFN-NINVDLMFALPNQSLDDWKETLLTVVGLSPEH 188

Query: 362 AFSFKYSPRLGTPGSNMLE 380
              +      GT   N+ +
Sbjct: 189 LSCYSLIIEEGTNFYNLYK 207


>gi|312794639|ref|YP_004027562.1| Radical SAM domain-containing protein [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312181779|gb|ADQ41949.1| Radical SAM domain protein [Caldicellulosiruptor kristjanssonii
           177R1B]
          Length = 351

 Score = 54.6 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/201 (12%), Positives = 66/201 (32%), Gaps = 17/201 (8%)

Query: 176 VTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL--SQVVDEARKLIDNGVCEITLLGQNVN 233
           +   +     C   C +C +  +        +   ++V+ A++    G   + L      
Sbjct: 53  LRGLIEFSSYCKNDCFYCGLRRSNNQAQRYRMQEDEIVEVAKRAYQMGYRTVVLQS---- 108

Query: 234 AWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHL 293
              G+ +   K     ++  +     +           D       A  D         +
Sbjct: 109 ---GEDMYYNKDMLCSIIKKIKSSVDVAITLSIGERSYDEYKAFKDAGADR------FLM 159

Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
             ++ + ++ +  +   +     + +  I+S+     + + F++G PG+T DD    + L
Sbjct: 160 RFETSNRQLYEKYHPGMSFENRIECLKWIKSL--GYELGTGFLIGLPGQTIDDLVQDILL 217

Query: 354 VDKIGYAQAFSFKYSPRLGTP 374
           V ++         + P   TP
Sbjct: 218 VKELDADMIGIGPFIPHPQTP 238


>gi|152969231|ref|YP_001334340.1| lipoyl synthase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
 gi|206580569|ref|YP_002239717.1| lipoic acid synthetase [Klebsiella pneumoniae 342]
 gi|238893695|ref|YP_002918429.1| lipoyl synthase [Klebsiella pneumoniae NTUH-K2044]
 gi|288936559|ref|YP_003440618.1| lipoic acid synthetase [Klebsiella variicola At-22]
 gi|290510385|ref|ZP_06549755.1| lipoyl synthase [Klebsiella sp. 1_1_55]
 gi|330006055|ref|ZP_08305473.1| lipoyl synthase [Klebsiella sp. MS 92-3]
 gi|166230421|sp|A6T689|LIPA_KLEP7 RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|226781793|sp|B5XZS6|LIPA_KLEP3 RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|150954080|gb|ABR76110.1| lipoyl synthase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
 gi|206569627|gb|ACI11403.1| lipoic acid synthetase [Klebsiella pneumoniae 342]
 gi|238546011|dbj|BAH62362.1| lipoyl synthase [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
 gi|288891268|gb|ADC59586.1| lipoic acid synthetase [Klebsiella variicola At-22]
 gi|289777101|gb|EFD85099.1| lipoyl synthase [Klebsiella sp. 1_1_55]
 gi|328535993|gb|EGF62406.1| lipoyl synthase [Klebsiella sp. MS 92-3]
          Length = 321

 Score = 54.6 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 32/182 (17%), Positives = 67/182 (36%), Gaps = 10/182 (5%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V    G  ++   ++    A+ + D G+  + +   +    R    DG   
Sbjct: 94  CTRRCPFCDV--AHGRPVAPDANEPQKLAQTIADMGLRYVVVTSVD----RDDLRDGGAQ 147

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
            F+D + ++ E    +++       R   D  +          P +         R+ + 
Sbjct: 148 HFADCISAIREKNPSIKIETLVPDFRGRMDRALDILTVTP---PDVFNHNLENVPRLYRQ 204

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           +          ++++R +   P+I   S  +VG  GET+D+    M  + + G       
Sbjct: 205 VRPGADYNWSLKLLERFKEAHPEIPTKSGLMVGL-GETNDEIIEVMRDLRRHGVTMLTLG 263

Query: 366 KY 367
           +Y
Sbjct: 264 QY 265


>gi|331270015|ref|YP_004396507.1| oxygen-independent coproporphyrinogen III oxidase [Clostridium
           botulinum BKT015925]
 gi|329126565|gb|AEB76510.1| oxygen-independent coproporphyrinogen III oxidase, putative
           [Clostridium botulinum BKT015925]
          Length = 343

 Score = 54.6 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 31/146 (21%), Positives = 68/146 (46%), Gaps = 6/146 (4%)

Query: 250 LLYSLSEIKGLVRLRYTT-SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
           L  S+ +++    L +T  S+P+      ++    +   +  + + +Q+  D+ L+++ R
Sbjct: 41  LKKSIDKLQKSDDLEFTVESNPKTFDKEKLEILKSMG--VNRISIGLQAWQDKHLQALGR 98

Query: 309 RHTAYEYRQIIDRIRSV-RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
            HT  E+ +  +  R V   +I I  D + G P ++ D+++ T+D + ++       +  
Sbjct: 99  IHTREEFLKSYNMAREVGFKNINI--DLMFGIPNQSFDEWKETLDEITELNPEHLSCYSL 156

Query: 368 SPRLGTPGSNMLEQVDENVKAERLLC 393
               GTP  N+ E    N+ +E L  
Sbjct: 157 IIEEGTPFYNLYENNKINLPSEELER 182


>gi|312623497|ref|YP_004025110.1| Radical SAM domain-containing protein [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312203964|gb|ADQ47291.1| Radical SAM domain protein [Caldicellulosiruptor kronotskyensis
           2002]
          Length = 351

 Score = 54.6 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/201 (12%), Positives = 67/201 (33%), Gaps = 17/201 (8%)

Query: 176 VTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL--SQVVDEARKLIDNGVCEITLLGQNVN 233
           +   +     C   C +C +  +        +   ++V+ A++    G   + L      
Sbjct: 53  LRGLIEFSSYCKNDCFYCGLRRSNSQAQRYRMQEDEIVEVAKRAYQMGYRTVVLQS---- 108

Query: 234 AWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHL 293
              G+ +   K     ++  +     +           D       A  D         +
Sbjct: 109 ---GEDMYYTKDMLCSIIKKIKSSVDVAITLSIGERSYDEYKAFKDAGADR------FLM 159

Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
             ++ ++ + K  +   +  +  + +  I+++     + + F++G PG+T DD    + L
Sbjct: 160 RFETSNEELYKKYHPGMSFEKRIECLKWIKNL--GYELGTGFLIGLPGQTIDDLAQDILL 217

Query: 354 VDKIGYAQAFSFKYSPRLGTP 374
           V ++         + P   TP
Sbjct: 218 VKELDADMIGIGPFIPHPQTP 238


>gi|303249424|ref|ZP_07335645.1| Radical SAM domain protein [Desulfovibrio fructosovorans JJ]
 gi|302489166|gb|EFL49137.1| Radical SAM domain protein [Desulfovibrio fructosovorans JJ]
          Length = 364

 Score = 54.6 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 46/240 (19%), Positives = 83/240 (34%), Gaps = 15/240 (6%)

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           + V+    +  DK       +    R R    F+T Q GC   C FC   + +     + 
Sbjct: 9   ESVIQAAVTGRDKGRIFRHPEPETPRSRVWPVFVTFQ-GCPGRCLFCA-QHLQSGHAPQP 66

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL----DGEKCTFSDLLYSLSEIKGLVR 262
           LS+V+ E    ++         G    A+ G       D     F +      E   + R
Sbjct: 67  LSRVLAEMAAGLEEAGRLGR--GPYELAFYGGVFTALPDPWPMRFLETAARFREAGLVTR 124

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ-IIDR 321
           +R +T  P   +  L+       + M  + L  Q+  D +L++  R H A   R+  +D 
Sbjct: 125 VRCST-RPDACAPGLLARLAGAGLDM--VELGAQTFDDAVLRAAGRGHDAASVRRAAVDV 181

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +R+    + +    + G PG T  +          +              GTP + +  +
Sbjct: 182 VRA---GMGLGVQLLPGLPGHTPRELARDAVEAAALAPEVVRLHPCLVVDGTPLAGLYRE 238


>gi|229514006|ref|ZP_04403468.1| hypothetical protein VCB_001651 [Vibrio cholerae TMA 21]
 gi|229349187|gb|EEO14144.1| hypothetical protein VCB_001651 [Vibrio cholerae TMA 21]
          Length = 316

 Score = 54.6 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 2/88 (2%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +L L +Q+  D+ LK +NR H    Y +I  + R++   I + +  IVG PGE   +   
Sbjct: 145 WLELGLQTAHDQTLKRINRGHDFACYAEITAKARAL--GIKVCTHLIVGLPGEGRTENLT 202

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
           T+  V K+G             G+  + 
Sbjct: 203 TLQQVLKVGTDGIKLHGLHIVEGSTMAK 230


>gi|319408354|emb|CBI82007.1| lipoic acid synthetase [Bartonella schoenbuchensis R1]
          Length = 317

 Score = 54.6 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 30/194 (15%), Positives = 73/194 (37%), Gaps = 11/194 (5%)

Query: 174 RGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVN 233
           +   +F+ + E C + C FC V    GI ++    +    A  +    +  + +   +  
Sbjct: 73  QRHASFMILGEICTRACAFCNV--ATGIPLAVDDDEPERVADAVAQMALKHVVITSVD-- 128

Query: 234 AWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHL 293
             R   +DG    F+ +++++ +      +   T   R   + L         +  +   
Sbjct: 129 --RDDLVDGGAQHFAKVIHAIRQKTPTTTIEVLTPDFRHKDNALEIVVAAKPDVFNH--- 183

Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
            +++   + LK +      +   +++ R++ + P I   S  +VG   E ++ F+  MD 
Sbjct: 184 NLETVPSKYLK-VRPGARYFHSIRLLQRVKELDPTIFTKSGIMVGLGEERNEIFQ-LMDD 241

Query: 354 VDKIGYAQAFSFKY 367
           +           +Y
Sbjct: 242 LRSADVDFMTIGQY 255


>gi|291544184|emb|CBL17293.1| Fe-S oxidoreductase [Ruminococcus sp. 18P13]
          Length = 446

 Score = 54.6 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 53/357 (14%), Positives = 114/357 (31%), Gaps = 43/357 (12%)

Query: 42  LRMEDMFFSQGYE------RVNSMDDA--------DLIVLNTCHIREKAAEKVYSFLGRI 87
             +  +   QG +      +V  +  A        DL+ +  C  R +    +  +    
Sbjct: 33  EYIAALLREQGVDYAIWDGQVERISAAEKLKAYMPDLVYV--CG-RTRQERFMLEYCQAA 89

Query: 88  RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPI---VNVVVGP-----QTYYRLPEL 139
           ++L  S    GG         + Q   + IL    I   + ++ G      +      E 
Sbjct: 90  KDLCGSVTVIGGLHAQQCYARMYQNCVDYILVSFDIFQLIQLIQGTPSEQLEDMCWRTEG 149

Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCV-VPYT 198
                  K        + D+   L+  D     +    A +     C   C+FC      
Sbjct: 150 DWHTATPKPFDIQRLPLPDRSYFLTHTDRYRYLELLPCAHVRTAYCCPYRCSFCSRNKLN 209

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258
            G+   R +  VV+E  ++       I L+  +           ++      +  + E +
Sbjct: 210 CGVYTCRDIQDVVEEIARIP---CENIYLVDDDFLV--------DEKRIRQFINLIRERQ 258

Query: 259 GLVRLR-YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
              R   Y  +        L++   ++     Y+   +++  D+ + + N++       +
Sbjct: 259 ICKRYVCYGRADFIVRYPELMQQLKEIG--FYYILTGLEALDDQHMTAYNKKCDMDCNTK 316

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
            ++ + +V   I +   FI      T  DFR+    +       A    ++P L +P
Sbjct: 317 AVEILHNV--GIHMMGMFIADLDF-TGKDFRSMYRWIKAHKLRHAAVSIFTPELDSP 370


>gi|256545387|ref|ZP_05472750.1| oxygen-independent coproporphyrinogen III oxidase [Anaerococcus
           vaginalis ATCC 51170]
 gi|256398948|gb|EEU12562.1| oxygen-independent coproporphyrinogen III oxidase [Anaerococcus
           vaginalis ATCC 51170]
          Length = 374

 Score = 54.6 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 84/232 (36%), Gaps = 25/232 (10%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C K C +C     + +E                +N   EI L  +N+N        G   
Sbjct: 13  CKKKCFYCDFTAFQNLE---------SWIASYFENLKKEIILYQKNMNVEVDSIYIGGGT 63

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDC------LIKAHGDLDVL-MPYLHLPVQSG 298
                 + + E+  +++  +  S+ ++ +         ++       L +  + L VQS 
Sbjct: 64  PTYVDYHYIDELVEILKN-FDLSNVKEFTIEANPNSLTLEKLKAYKNLGINRISLGVQSF 122

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
            D++LK + R H      + I+ IR    D  +S D I+  PG   D  +  ++++ KI 
Sbjct: 123 DDKVLKKIGRDHNKEIVLKDIENIRKAGFD-NLSLDMILNLPGGNFDSIKNDLEIIKKIN 181

Query: 359 YAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACV 410
                 +      G+   ++        K ++L  +   L     S+ +  +
Sbjct: 182 PEHLSYYSLILEKGSHFYSLY-------KKDKLKLMDDDLERDIFSYIEKYL 226


>gi|256396509|ref|YP_003118073.1| lipoyl synthase [Catenulispora acidiphila DSM 44928]
 gi|256362735|gb|ACU76232.1| lipoic acid synthetase [Catenulispora acidiphila DSM 44928]
          Length = 323

 Score = 54.6 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 41/250 (16%), Positives = 83/250 (33%), Gaps = 27/250 (10%)

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           ++V ++    +I +   +R+     FL   + C + C FC +    G        +    
Sbjct: 55  HTVCEEAGCPNIYECWEDRE---ATFLIGGDQCTRRCDFCQI--DTGKPKDYDTDEPRRV 109

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
           A  +   G+   T+ G      R    D     +++ +  +  +     +          
Sbjct: 110 AESVQTMGLKYATITGV----ARDDLEDEGVWLYAETVRQIHALLPGCGVELLIPDFHAK 165

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
            + L +  G    ++ +    V     RI K +           +I + R     +   S
Sbjct: 166 PELLAEVFGSRPEVLAHNIETV----PRIFKEIRPGFRYERSLDVIRQARDY--GLVTKS 219

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY---SPRLGTPGSNMLEQVDENVKAER 390
           + I+G  GE  ++    +  + + G       +Y   SPR           V   VK E 
Sbjct: 220 NLILGM-GEEREEISQALTDLREAGCDLVTITQYLRPSPRHH--------PVMRWVKPEE 270

Query: 391 LLCLQKKLRE 400
            + L ++ RE
Sbjct: 271 FVELAEEARE 280


>gi|16759592|ref|NP_455209.1| lipoyl synthase [Salmonella enterica subsp. enterica serovar Typhi
           str. CT18]
 gi|22001765|sp|Q8Z8I3|LIPA_SALTI RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|25319603|pir||AD0580 lipoic acid synthetase [imported] - Salmonella enterica subsp.
           enterica serovar Typhi (strain CT18)
 gi|16501884|emb|CAD05110.1| lipoic acid synthetase [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 321

 Score = 54.6 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 42/258 (16%), Positives = 85/258 (32%), Gaps = 19/258 (7%)

Query: 118 LRRSPIVNVVVGPQTYYRLPELLERAR-------FGKRVVDTDYSVEDKFERLSIVDGGY 170
           +   P+ NVV       R PE ++           G +       +    E  S  +   
Sbjct: 19  MALIPVKNVVTERDALLRKPEWMKIKLPADSTRIQGIKAAMRKNGLHSVCEEASCPNLAE 78

Query: 171 NRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQ 230
               G   F+ +   C + C FC V    G  ++    +    A+ + D  +  + +   
Sbjct: 79  CFNHGTATFMILGAICTRRCPFCDV--AHGRPVAPDAEEPQKLAQTIADMALRYVVITSV 136

Query: 231 NVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAH-GDLDVLMP 289
           +    R    DG    F+D + ++      +++       R   D  +         +  
Sbjct: 137 D----RDDLRDGGAQHFADCITAIRAKSPEIKIETLVPDFRGRMDRALDILNATPPDVFN 192

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +    V     RI + +          ++++R +   P+I   S  +VG  GET+ +   
Sbjct: 193 HNLENV----PRIYRQVRPGADYNWSLKLLERFKEAHPEIPTKSGLMVGL-GETNAEIIE 247

Query: 350 TMDLVDKIGYAQAFSFKY 367
            M  + + G       +Y
Sbjct: 248 VMRDLRRHGVTMLTLGQY 265


>gi|330972469|gb|EGH72535.1| coproporphyrinogen III oxidase [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 460

 Score = 54.6 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 46/267 (17%), Positives = 93/267 (34%), Gaps = 29/267 (10%)

Query: 160 FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC----VVPYTRGIEIS---RSLSQVVD 212
           FE L  +       R ++ ++ +   C   C +C    V+   RG   +   R   ++  
Sbjct: 38  FELLHALRESRKASRPLSLYVHLPF-CANICYYCACNKVITKDRGRAQAYLQRLEHEIQM 96

Query: 213 EARKLI-DNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPR 271
            A  L     V ++ L G          L             L +  G   +        
Sbjct: 97  LACHLAPGQVVEQLHLGGGTPTFLSHDELRRLMAQLRLHFNLLEDDSGDYGIEIDPREAD 156

Query: 272 DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAI 331
             +  L++  G        + L VQ     + +++NR  +  E R I++  R+++   ++
Sbjct: 157 WATMGLLRELG-----FNRVSLGVQDLDPTVQRAINRMQSLEETRAIVEAARTLQFR-SV 210

Query: 332 SSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY-------SPRLGTPGSNMLEQVDE 384
           + D I G P +    F  T+D V  +   +   F Y        P+     +++ +   +
Sbjct: 211 NIDLIYGLPAQNPQTFSHTVDKVIDLQPDRLSVFNYAHLPERFMPQRRIDAADLPDAASK 270

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVG 411
                 LL LQ+ + +   +     +G
Sbjct: 271 ------LLMLQRTVEQLGNAGY-RYIG 290


>gi|317476530|ref|ZP_07935777.1| radical SAM superfamily protein [Bacteroides eggerthii 1_2_48FAA]
 gi|316907273|gb|EFV28980.1| radical SAM superfamily protein [Bacteroides eggerthii 1_2_48FAA]
          Length = 506

 Score = 54.6 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 53/325 (16%), Positives = 105/325 (32%), Gaps = 48/325 (14%)

Query: 42  LRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDL 101
             +  +     Y     +  A   + N         E++     R++ L         + 
Sbjct: 43  ENIGTIVEEA-YRHKPDILAATAWLFN--------HEQLLHITSRLKAL-------LPET 86

Query: 102 LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR--------VVDTD 153
            +++ G     + E  LR++P VN V   +     P  L      ++         +D+D
Sbjct: 87  CLILGGPEFLGDNEFFLRKNPFVNCVFRGEGEEAFPRWLSCWNHPEQWNTISGLCFLDSD 146

Query: 154 YSVEDKFERLS------IVDGGYNRKRGVTAFLTI--QEGCDKFCTFCVVPYTRGIEISR 205
               D            I             F+ +    GC   C FC V        + 
Sbjct: 147 AQYRDNGIARVLNFSGLIPPEKSRFFNWSKPFVQLETTRGCFNTCAFC-VSGGEKPIRTL 205

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           S+  +    + + ++G+  + +L +  N    +     K      L         +R   
Sbjct: 206 SIDSIRRRLQIIHEHGIKNVRVLDRTFNYNARR----AKELLQLFLEF-----PDIRFHL 256

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
              HP  +S+ L +    L   + +L   +QS  + +LK   R     +    ++ + S+
Sbjct: 257 E-IHPALLSEELKEELRRLPQGLLHLEAGIQSLREPVLKQSRRMGKLSDALAGLEFLCSL 315

Query: 326 RPDIAISSDFIVGFP----GETDDD 346
            P++   +D I G P     E  +D
Sbjct: 316 -PNMETHADLIAGLPLYHLNEIFED 339


>gi|315425077|dbj|BAJ46750.1| Fe-S oxidoreductase [Candidatus Caldiarchaeum subterraneum]
          Length = 535

 Score = 54.6 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 37/214 (17%), Positives = 69/214 (32%), Gaps = 17/214 (7%)

Query: 159 KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLI 218
           ++    I D        ++    I  GC   C FC V  T          +VV+E    +
Sbjct: 194 RYRLPKIEDIPTIVNPAISGQAEIMRGCGIDCDFCEV--TTRPLRYYPPEKVVEEVLVNL 251

Query: 219 DNGVCEITLLGQNVNAWRGKG--LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDC 276
             G+     +  N  A+  +       K     L  ++ +        + T  P      
Sbjct: 252 RGGINNAWFVTDNQWAYMVRDPMFWPNKEAIFRLYRAVMQHVSKANPMHATLAPVAADPE 311

Query: 277 LIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE-----------YRQIIDRIRSV 325
                  +    P  H+ VQ G +     +  +H   +           + +I+   + V
Sbjct: 312 AAMGVAKIVGAGPDKHIGVQIGLETGSDKLVLKHMVNKAKPLKVGVDGTWAEIVVEAQKV 371

Query: 326 R--PDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
                   +   I+G  GETD+D   T+ L++ +
Sbjct: 372 YNAAYWIPAYTIILGQEGETDEDSWDTIGLINYM 405


>gi|300702555|ref|YP_003744155.1| coproporphyrinogen III oxidase [Ralstonia solanacearum CFBP2957]
 gi|299070216|emb|CBJ41507.1| Coproporphyrinogen III oxidase [Ralstonia solanacearum CFBP2957]
          Length = 491

 Score = 54.6 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 39/193 (20%), Positives = 72/193 (37%), Gaps = 14/193 (7%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C   C +C        + +RS   +   AR++       I  L Q      G    G   
Sbjct: 85  CANLCYYCGCNKVVTKDHTRSARYIRALAREM-AMIARHIGPLRQATQLHWG----GGTP 139

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL-------MPYLHLPVQSG 298
           TF      + ++    R  +  +   ++S  L   H   D L            L +Q  
Sbjct: 140 TF-LSHDEMRDVMTATREHFALTSDAEISVELDPRHAGDDTLAVLADLGFNRASLGIQDF 198

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
              + ++++R  +  + R+++D  R +    +IS D I G P +  D F AT+D V ++ 
Sbjct: 199 DADVQRAIHRVQSVEQTRRVVDSARRLGFQ-SISFDLIYGLPHQHIDTFNATLDRVLEMA 257

Query: 359 YAQAFSFKYSPRL 371
             +   + Y+   
Sbjct: 258 PDRLSVYSYAHLP 270


>gi|284053503|ref|ZP_06383713.1| coproporphyrinogen III oxidase [Arthrospira platensis str. Paraca]
 gi|291568296|dbj|BAI90568.1| coproporphyrinogen III oxidase, anaerobic [Arthrospira platensis
           NIES-39]
          Length = 429

 Score = 54.6 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 44/211 (20%), Positives = 77/211 (36%), Gaps = 8/211 (3%)

Query: 175 GVTAFLTIQEGCDKFCTFC-----VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLG 229
              A++ I   C + C +C     VV   R  E S  + + V+   + I N      L  
Sbjct: 13  PTAAYVHIPF-CRRRCYYCDFAVSVVGDRRHGENSGMIQEYVNFLCEEIVNQ-RHFGLPL 70

Query: 230 QNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMP 289
           + V    G         F  L+ ++S+  G+      +      +  L K  G +     
Sbjct: 71  KTVFFGGGTPSLLSVQQFDRLMKTISDHLGIASDAEISVEMDPGTFDLGKLQGFVAAGAN 130

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
            + + VQ+  D +L+   R HT  +  + ID I +    +  S D I G P +T +  + 
Sbjct: 131 RVSVGVQAFQDDLLRLCGRSHTVADIWRAIDLI-NQVGVVNFSIDLISGLPHQTPEMMQE 189

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++D V  I  A    +       T      +
Sbjct: 190 SLDQVLSINPAHVSHYDLIVEPQTAFGRYYK 220


>gi|284008732|emb|CBA75428.1| oxygen-independent coproporphyrinogen III oxidase [Arsenophonus
           nasoniae]
          Length = 474

 Score = 54.6 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 48/249 (19%), Positives = 92/249 (36%), Gaps = 11/249 (4%)

Query: 122 PIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLT 181
           P +  ++  Q    L E + +  FG  +   D          + ++    +   +  ++ 
Sbjct: 19  PNICNILSKQENTDLLEYVVKDPFGCHIFPGDIDNYPLTSFYNDMNKEIKKAENIHLWVY 78

Query: 182 IQEGCDKFCTFCVVPYT-----RGIEISRSLSQVVDEARKLIDNGVCEI-TLLGQNVNAW 235
           I   C   C FC  P            S    ++VD   K     + ++  L   ++  +
Sbjct: 79  IPT-CRYRCHFCQFPTVIVNPNTAKADSL-FKEIVDLNIKEATFWLKQVPNLTNVSIGEF 136

Query: 236 RGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPV 295
              G         +L   ++  K       TT         L K +  L   + +  L  
Sbjct: 137 NIFGGTPSLLPDRELKRLINFYKNNFNFSSTTMRFEGEPGSLNKEYLSLLKELGFSKLSF 196

Query: 296 --QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
             QS  D ++K+  R+HTA E+ + I    ++  ++ IS D I G  G+T DD +  M++
Sbjct: 197 GTQSFQDHLIKACGRKHTAEEFFKTIADANTLGFEL-ISVDLIYGLFGQTVDDVKNDMEI 255

Query: 354 VDKIGYAQA 362
           + K+  +  
Sbjct: 256 IKKLNISHV 264


>gi|261337371|ref|ZP_05965255.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Bifidobacterium gallicum DSM 20093]
 gi|270277751|gb|EFA23605.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Bifidobacterium gallicum DSM 20093]
          Length = 388

 Score = 54.6 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 39/207 (18%), Positives = 69/207 (33%), Gaps = 32/207 (15%)

Query: 186 CDKFCTFC----VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQ-------NVNA 234
           C + C +C          G   SR                + E+ L+ Q       +   
Sbjct: 11  CLRRCGYCDFNTYTARDLGNGASR---------EGYAHQAIQEMRLVRQWQLDHGLDEGP 61

Query: 235 WRGKGLDGEKCTF---SDLLYSLSEIKGLVRLRYTTSHPRD-----MSDCLIKAHGDLDV 286
                L G   T    S+L   +  I G+  +        +     +    I+A  D   
Sbjct: 62  VSTVFLGGGTPTILTPSNLAAMVQAIDGIWGIEAGAEITTEANPDTVDADYIQALADAG- 120

Query: 287 LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDD 346
               +   +QS    +L +++R HT       I+   + R  +  S D I G PGE+ DD
Sbjct: 121 -FTRISFGMQSAVPHVLHTLDRTHTPANVEAGINA--ANRAGLRSSVDLIYGTPGESLDD 177

Query: 347 FRATMDLVDKIGYAQAFSFKYSPRLGT 373
           +R ++     +G     ++  +    T
Sbjct: 178 WRTSVKTAIALGVNHISAYALTVEPTT 204


>gi|314933137|ref|ZP_07840502.1| lipoyl synthase [Staphylococcus caprae C87]
 gi|313653287|gb|EFS17044.1| lipoyl synthase [Staphylococcus caprae C87]
          Length = 305

 Score = 54.6 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 41/256 (16%), Positives = 90/256 (35%), Gaps = 20/256 (7%)

Query: 112 AEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYN 171
            + EEILR+   + + +     Y   + + R +         ++V ++ +  +I +    
Sbjct: 3   TKNEEILRKPDWLKIKLNTNENYTGLKKMMREKN-------LHTVCEEAKCPNIHECWGA 55

Query: 172 RKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQN 231
           R+     F+ +   C + C FC V      E+   L++    A  +    +  + +    
Sbjct: 56  RR--TATFMILGAVCTRACRFCAVKTGLPNEL--DLNEPERVAESVGLMNLKHVVITAV- 110

Query: 232 VNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL 291
               R    D     +++ +  + E      +    S      + L         ++ + 
Sbjct: 111 ---ARDDLRDQGSNVYAETVRKVRERNPFTTIEILPSDMGGDYEALETLMASRPDILNHN 167

Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351
              V+  +      +  R T     + + R + ++PDI   S  +VG  GET ++   TM
Sbjct: 168 IETVRRLTP----RVRARATYDRTLEFLRRSKELQPDIPTKSSLMVGL-GETMEEIYETM 222

Query: 352 DLVDKIGYAQAFSFKY 367
           D +           +Y
Sbjct: 223 DDLRANDVDILTIGQY 238


>gi|258592845|emb|CBE69154.1| Radical SAM domain protein [NC10 bacterium 'Dutch sediment']
          Length = 867

 Score = 54.6 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 43/240 (17%), Positives = 79/240 (32%), Gaps = 22/240 (9%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
           + +  GC + C FC   Y       RS  ++   A + +     E   L     A     
Sbjct: 245 IEVMRGCTQGCRFCQAGYLYRPLRERSAEEIQQLAVQAVRQTGYEEVSLASLSIADLTVL 304

Query: 240 LDGEKCTF-SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
            D         L   +S    L  LR  T +        I              +  ++G
Sbjct: 305 PDVVPALMDRLLPEKISL--SLPSLRVETLNRFPQVAEEISRVRKTG-----FTIAPEAG 357

Query: 299 SDRILKSMNR-RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK- 356
           S R+ K +N+      +    +        + ++   FI+G P ET +D    + +  + 
Sbjct: 358 SSRLRKVINKEGFDEEQIFTAVRNAARAGWE-SVKFYFIIGLPTETQEDLDEIVRITRES 416

Query: 357 IGYAQ----------AFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFN 406
              A+            +  + P+  TP      Q    +  ++   L++K RE +VS+ 
Sbjct: 417 ARIARAESTRGFGLTVSTSSFVPKPHTP-FQWCAQEPMEMLKDKQEFLRRKFREIRVSYK 475


>gi|284162061|ref|YP_003400684.1| radical SAM protein [Archaeoglobus profundus DSM 5631]
 gi|284012058|gb|ADB58011.1| Radical SAM domain protein [Archaeoglobus profundus DSM 5631]
          Length = 539

 Score = 54.6 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 44/269 (16%), Positives = 85/269 (31%), Gaps = 42/269 (15%)

Query: 185 GCDK-FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQ------------N 231
           GC    C+FC+  + +    S     V+ E + L DNGV    L  Q            +
Sbjct: 177 GCYWGRCSFCIERFHKLEMRS--PEGVIAEIKALYDNGVRYFRLGNQTDFFTYMADFRYD 234

Query: 232 VNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL 291
           +     + + G      +    +  +        T +   + S   IK            
Sbjct: 235 IPKPNPEFMKGFHKAIWENCPRIKTLHLDNVNPKTIAVHPEESREAIKTIITYQTPGNVG 294

Query: 292 HLPVQSGSDRILKSMNRRHTAY---EYRQIIDRIRSV----RPDIAISSDFIVGFPGETD 344
            + ++S  +R++   N   T        ++++  RSV     P      +F++G  GET 
Sbjct: 295 AMGLESADERVVGENNLCATPEEVKFAIRLVNEYRSVGYNGLPCFLPGINFVIGLKGETK 354

Query: 345 DDFRATMDLVDK-----IGYAQAFSFKYSPRLGTPGSN---------------MLEQVDE 384
             F    + + +     +   +    +     GTP                    E+V +
Sbjct: 355 RTFEKNYEFLKELLEEDLWVRRINIRQVKIFKGTPMEKVGYRNVVKHKKYFKVFKEKVRK 414

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQI 413
            +  E L  +    R+      +   G+I
Sbjct: 415 EIDREMLKRIVPIGRKLADLRCELKKGRI 443


>gi|270263141|ref|ZP_06191411.1| hypothetical protein SOD_d01570 [Serratia odorifera 4Rx13]
 gi|270042829|gb|EFA15923.1| hypothetical protein SOD_d01570 [Serratia odorifera 4Rx13]
          Length = 721

 Score = 54.6 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 58/373 (15%), Positives = 116/373 (31%), Gaps = 72/373 (19%)

Query: 127 VVGPQTYYRLPELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNR-------KRGVTA 178
           ++  +T       L ++   + V ++         E  S+    Y R       K  + A
Sbjct: 310 ILHHETNPGCARALMQSHGDRYVWINPPAIPLTTPEMDSVFALPYQRIPHPSYGKETIPA 369

Query: 179 F------LTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDNGVCEITLLGQ- 230
           +      + I  GC   C+FC +    G  I SRS   ++ E  ++ D       ++   
Sbjct: 370 YDMIRFSVNIMRGCYGGCSFCSITEHEGRIIQSRSEDSIIREIEEIRDKVPGFTGVISDL 429

Query: 231 -----------------NVNAWRGKGLDGEKCTFSD--------LLYSLSEIKGLVRLRY 265
                                 R   +  E CT+ D        L      ++G+ ++  
Sbjct: 430 GGPTANMYMLRCTNPRAEQTCRRASCVYPEICTYMDTNHEPTINLYRRARSLEGVKKILI 489

Query: 266 TTSHPRDMSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRR--HTAYEYRQIIDR 321
            +    D++    +   +L    +  YL +  +   +  L  M +    +   ++Q+ D 
Sbjct: 490 ASGVRYDLAVEDPRYIKELATHHVGGYLKIAPEHTEEGPLSKMMKPGMGSYDRFKQLFDH 549

Query: 322 IRSVR-PDIAISSDFIVGFPGETDDDFRATMDLVDKIGY--AQAFSFKYSPRLGTPGSNM 378
              +   +  +   FI   PG  D+D       + K  +   Q  +F  SP   +     
Sbjct: 550 YSKLAGKEQYLIPYFISSHPGTRDEDMVNLALWLKKNRFRLDQVQNFYPSPMANSTTMYY 609

Query: 379 LEQVD--------ENV---KAERLLCLQKKLREQQVSFN-------------DACVGQII 414
             +          E+V   + +R   L K L       N                +G   
Sbjct: 610 TGKNPLSKVGYKSEDVVVPRGDRQRRLHKALLRYHDPANWAMIRTALEEMGMKHLIGSRR 669

Query: 415 EVLIEKHGKEKGK 427
           E L+     ++ +
Sbjct: 670 ECLVPAPSIDEQR 682


>gi|262404694|ref|ZP_06081249.1| hypothetical protein VOA_002692 [Vibrio sp. RC586]
 gi|262349726|gb|EEY98864.1| hypothetical protein VOA_002692 [Vibrio sp. RC586]
          Length = 312

 Score = 54.6 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 31/124 (25%), Positives = 49/124 (39%), Gaps = 12/124 (9%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +L L +Q+  D  LK +NR H    Y +I  + R++   I + +  IVG PGE   D  A
Sbjct: 141 WLELGLQTAHDHTLKRINRGHDFACYAEITAKARAL--GIKVCTHLIVGLPGEGRCDNLA 198

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDAC 409
           T+  V  +G             G+  +          KA R   L    +++ VS     
Sbjct: 199 TLQQVLSVGTDGIKLHGLHIVEGSTMA----------KAWRAGRLTVLEQDEYVSIACEM 248

Query: 410 VGQI 413
           +   
Sbjct: 249 IRST 252


>gi|120404553|ref|YP_954382.1| lipoyl synthase [Mycobacterium vanbaalenii PYR-1]
 gi|119957371|gb|ABM14376.1| lipoic acid synthetase [Mycobacterium vanbaalenii PYR-1]
          Length = 332

 Score = 54.6 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 41/245 (16%), Positives = 81/245 (33%), Gaps = 27/245 (11%)

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQ-EGCDKFCTFCVVPYTRGIEISRSLSQVVD 212
           ++V ++    +I +   +R+    A   I  E C + C FC +   +  E+ R   +   
Sbjct: 62  HTVCEEAGCPNIFECWEDRE----ATFLIGGEQCTRRCDFCQIDTGKPAELDR--DEPRR 115

Query: 213 EARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
            A  +   G+   T+ G      R    DG    +S+ +  +  +     +         
Sbjct: 116 VAESVAAMGLRYSTVTGV----ARDDLPDGGAWLYSETVRQIKALNPNTGVELLIPDFNA 171

Query: 273 MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAIS 332
               L +       ++ +    V     RI K +           ++   R     +   
Sbjct: 172 DPAQLQQVFESRPEVLAHNVETV----PRIFKRIRPGFRYERSLSVLTMARDY--GLVTK 225

Query: 333 SDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE-----QVDENVK 387
           S+ I+G  GET ++ R  +  + + G       +Y      P +           DE V+
Sbjct: 226 SNLILGM-GETPEEVREALVDLHRAGCDIVTITQYLR----PSARHHPVERWVHPDEFVE 280

Query: 388 AERLL 392
            ER  
Sbjct: 281 HERYA 285


>gi|313904023|ref|ZP_07837403.1| conserved hypothetical protein [Eubacterium cellulosolvens 6]
 gi|313471172|gb|EFR66494.1| conserved hypothetical protein [Eubacterium cellulosolvens 6]
          Length = 301

 Score = 54.6 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 31/208 (14%), Positives = 63/208 (30%), Gaps = 20/208 (9%)

Query: 188 KFCTFCVVPYTRGIEISR-SLSQVVDEARKLIDNGV---------CEITLLGQNVNAWRG 237
             CTFC    +     S   + + ++EARK +D  +           I         +  
Sbjct: 39  GGCTFCSEGGSGDFAASFCPIDEQIEEARKKVDAKIPASIPPDQRKYIAYFQSFTGTYSD 98

Query: 238 KGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQS 297
                E  T +     +  +    R         +M   L        V   ++ L +Q+
Sbjct: 99  VDRLREIFTTALNREEIVGLSVGTRPDCLEEEKVEMLRELNM---KKPV---WVELGLQT 152

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
                   ++R +    +     R+++    + +    I+G PGET +    T+  +  +
Sbjct: 153 IHQETADRVHRGYRLEVFEDAYRRLKAA--GLTVIVHVILGLPGETKEMMLETVRYLAAL 210

Query: 358 G--YAQAFSFKYSPRLGTPGSNMLEQVD 383
                           GT  +   E+  
Sbjct: 211 RPELDGIKLQLLHILKGTALAKEYEEKP 238


>gi|300990941|ref|ZP_07179393.1| radical SAM protein, TIGR01212 family [Escherichia coli MS 45-1]
 gi|300407017|gb|EFJ90555.1| radical SAM protein, TIGR01212 family [Escherichia coli MS 45-1]
          Length = 309

 Score = 54.6 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 41/236 (17%), Positives = 74/236 (31%), Gaps = 34/236 (14%)

Query: 181 TIQEGCDKFCTFCVV-PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
           TI  G    CTFC V  +    +  RS+++ +     L++     +              
Sbjct: 39  TIGRG---GCTFCNVASFADEAQQHRSIAEQLAHQANLVNRAKRYLAYF-----QAYTST 90

Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPR-DMSDCLIKAHGDLDVLMPYLHLPVQSG 298
               +   S    ++S++  +     T      D    L+  + D    + +L L +Q+ 
Sbjct: 91  FAEVQVLRSMYQQAVSQVNIVGLCVGTRPDCVPDAVLDLLCEYKDQGYEV-WLELGLQTA 149

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
            D+ L  +NR H    Y++     R     + + S  IVG PGE   +   T++ V + G
Sbjct: 150 HDKTLHRINRGHDFACYQRTTQLARER--GLKVCSHLIVGLPGEGQAECLQTLERVVETG 207

Query: 359 YAQAFSFKYSPRLG---------------------TPGSNMLEQVDENVKAERLLC 393
                        G                          M+      V   R+  
Sbjct: 208 VDGIKLHPLHIVKGSIMAKAWEAGRLNGIELEDYTLTAGEMIRHTPPEVIYHRISA 263


>gi|229591974|ref|YP_002874093.1| coproporphyrinogen III oxidase [Pseudomonas fluorescens SBW25]
 gi|229363840|emb|CAY51294.1| oxygen-independent coproporphyrinogen III oxidase [Pseudomonas
           fluorescens SBW25]
          Length = 460

 Score = 54.6 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 45/267 (16%), Positives = 94/267 (35%), Gaps = 27/267 (10%)

Query: 159 KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC----VVPYTRGI---EISRSLSQV- 210
            F+ L  +       R ++ ++ +   C   C +C    V+   RG     + R   ++ 
Sbjct: 37  TFDLLHALRESRKAARPLSLYVHVPF-CANICYYCACNKVITKDRGRALPYLQRLEQEIQ 95

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270
           +          V ++   G          L             L +  G   +       
Sbjct: 96  LVACHLDPKQPVEQLHFGGGTPTFLSHDELRQVMNCLRQHFNLLDDDSGDYGIEIDPREA 155

Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330
              +  L++  G        + + +Q     + +++NR  +  E R +ID  R+++   +
Sbjct: 156 DWATMGLLRELG-----FNRVSIGLQDLDPEVQRAVNRLQSLEETRAVIDAARTLQFR-S 209

Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML------EQVDE 384
           I+ D I G P +T  +F  T++ V K+   +   F Y+         M       + +  
Sbjct: 210 INVDLIYGLPKQTPINFARTVEEVIKLQPDRLSVFNYAHLPE---RFMPQRRINTDDLPS 266

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVG 411
           +  AE+LL LQ  + +   +     +G
Sbjct: 267 S--AEKLLMLQTTIEQLTQAGY-RYIG 290


>gi|153933683|ref|YP_001385222.1| coproporphyrinogen III oxidase [Clostridium botulinum A str. ATCC
           19397]
 gi|226950388|ref|YP_002805479.1| oxygen-independent coproporphyrinogen III oxidase [Clostridium
           botulinum A2 str. Kyoto]
 gi|152929727|gb|ABS35227.1| oxygen-independent coproporphyrinogen III oxidase [Clostridium
           botulinum A str. ATCC 19397]
 gi|226842192|gb|ACO84858.1| oxygen-independent coproporphyrinogen III oxidase [Clostridium
           botulinum A2 str. Kyoto]
          Length = 380

 Score = 54.6 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 33/199 (16%), Positives = 74/199 (37%), Gaps = 14/199 (7%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C++C        E    +  V   ++++++N   +I      +    G        
Sbjct: 19  CMQKCSYCDFTSYSKKE-DLMMEYVKALSKEIVNNTKNKIIKT---IFIGGGTPTYLSLE 74

Query: 246 TFSDLLYSLSEIKGLVRLRYTTS----HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
             + L  +L  I     + +T         +    L+K+ G     +  L + +QS  + 
Sbjct: 75  ALNILKNTLKTIDKKENIEFTVEGNPGTFTEKKLKLLKSMG-----VNRLSIGLQSSKNS 129

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
           +LK++ R H+  ++       R    +  I+ D +   P ++ DD++ T+  V  +    
Sbjct: 130 LLKTLGRIHSFEDFAHSFKMARKEGFN-NINVDLMFALPNQSLDDWKETLLTVVGLSPEH 188

Query: 362 AFSFKYSPRLGTPGSNMLE 380
              +      GT   N+ +
Sbjct: 189 LSCYSLIIEEGTNFYNLYK 207


>gi|331269253|ref|YP_004395745.1| oxygen-independent coproporphyrinogen III oxidase [Clostridium
           botulinum BKT015925]
 gi|329125803|gb|AEB75748.1| oxygen-independent coproporphyrinogen III oxidase [Clostridium
           botulinum BKT015925]
          Length = 478

 Score = 54.6 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 43/317 (13%), Positives = 105/317 (33%), Gaps = 28/317 (8%)

Query: 126 VVVGPQTYYRLPELLERARFGKRVVDTDYS-----VEDKFERLSIVDGGYNRKRGVTAFL 180
           +++G +    + ++++     + +++   +     ++     + I     +R    +  +
Sbjct: 92  ILIGIRPTKIVLDMMDEGFTEEEIINVLMNEYYARIDKAKLCIDIAKAEKSRVNKESKNV 151

Query: 181 TIQEG---CDKFCTFCVVPY--TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW 235
           +I  G   C   C +C        G   ++ +   +++ ++ I+     I     N+   
Sbjct: 152 SIYIGMPFCPTTCLYCSFASNPIAGRNTNKMVEPYLEKLKEEINIIKEFIEKKDLNIECV 211

Query: 236 RGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP- 294
              G              + ++                       + +  + M   H+  
Sbjct: 212 YFGGGTPTSVNNEQFESIIEKVYKSFVKNRNVKEFNIECGRPDSINEEKLLTMKKYHVSR 271

Query: 295 ----VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
                Q+ ++  LK + R HT  +  +  +  R +  D  I+ D IVG P ET D+   T
Sbjct: 272 ISINPQTMNEDTLKLIGRHHTVEDIIEKFNLARKIGFD-NINMDIIVGLPNETLDNIETT 330

Query: 351 MDLVDKIGYAQAFSFKYSPRLGTPGSN--MLEQVDENVKAERLLCLQKKLREQQVSFN-- 406
              + K+          S + G+       +++V   +K + L  +  +  +     N  
Sbjct: 331 CKEILKLNPDSLTVHGMSIKRGSKLYEEIYIDKV-RIMKQQSLNEMYMRTTKLAEELNMK 389

Query: 407 -------DACVGQIIEV 416
                     VG +  V
Sbjct: 390 PYYMYRQKNMVGHMENV 406


>gi|327440964|dbj|BAK17329.1| coproporphyrinogen III oxidase [Solibacillus silvestris StLB046]
          Length = 381

 Score = 54.6 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/195 (14%), Positives = 68/195 (34%), Gaps = 14/195 (7%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C +C             + + ++   + ++  V ++                G   
Sbjct: 12  CHQICNYCDFNKVFFKNQ--PVDEYIEALGREMEMTVAQM----PEAFTNIETIFLGGGT 65

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL-------MPYLHLPVQSG 298
             +     + ++ GL+      S  ++ S         +D L       +  L + VQS 
Sbjct: 66  PTALSAQQIEKLLGLITKHIPMSSVKEFSSEANPDELTIDKLQALYNGGVNRLSMGVQSF 125

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
              +L+ + R H+     + I   ++V  +  IS D + G PG+T + ++ T++    + 
Sbjct: 126 DQSLLEKIGRTHSNEHVYETIQNAKNVGFE-NISIDLMYGLPGQTMEQWQETLEKALALK 184

Query: 359 YAQAFSFKYSPRLGT 373
                ++       T
Sbjct: 185 LPHYSAYSLIVEPKT 199


>gi|320096044|ref|ZP_08027647.1| coproporphyrinogen dehydrogenase [Actinomyces sp. oral taxon 178
           str. F0338]
 gi|319977023|gb|EFW08763.1| coproporphyrinogen dehydrogenase [Actinomyces sp. oral taxon 178
           str. F0338]
          Length = 407

 Score = 54.6 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 5/92 (5%)

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
           +   +QS   R+L +++R H      + +   R     + +S D I G PGET DD+RA+
Sbjct: 149 VSFGMQSAVPRVLAALDRTHAPERVPEAVAWAREA--GLDVSVDLIYGCPGETLDDWRAS 206

Query: 351 MDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
           +    ++      ++      GT    M  QV
Sbjct: 207 LLAATRMRPDHISAYALVVEEGT---RMGAQV 235


>gi|302346809|ref|YP_003815107.1| radical SAM domain protein [Prevotella melaninogenica ATCC 25845]
 gi|302151146|gb|ADK97407.1| radical SAM domain protein [Prevotella melaninogenica ATCC 25845]
          Length = 616

 Score = 54.6 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 39/223 (17%), Positives = 80/223 (35%), Gaps = 19/223 (8%)

Query: 149 VVDTDYSVEDKFERLSIVDGGYN---RKRGVTAFLTIQEGCD-KFCTFCVVPYTRGIEIS 204
           V+  +Y+  DK +     D   +   R + V   +    GC    C FC +         
Sbjct: 232 VIKKEYADLDKLQYSDFYDFFKSYKGRLKDVMIPIEGARGCHWNRCHFCFLNQGY-KYRR 290

Query: 205 RSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK---GL 260
           +S   + +E    I    V + T L  +V          ++  F +LL  L EIK     
Sbjct: 291 KSAEVIKEEILYNIKKYSVYDFTFLDNDVIGK-------DREKFKNLLDKLIEIKNNHPK 343

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R+       R +    IK          ++ +  +S SD +L  ++++++       I 
Sbjct: 344 FRVMLAEIITRGIDFETIKKMHIAGFF--HVQIGYESPSDTLLYKIDKKNSFASNLFFIK 401

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
               +  ++    + + G   E  +D + ++  +  + + Q  
Sbjct: 402 WAHELNINVG-GMNVLRGLLEENLEDIKESVQNLHFMRFYQLG 443


>gi|86147381|ref|ZP_01065694.1| hypothetical protein MED222_00962 [Vibrio sp. MED222]
 gi|85834809|gb|EAQ52954.1| hypothetical protein MED222_00962 [Vibrio sp. MED222]
          Length = 317

 Score = 54.6 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 41/203 (20%), Positives = 65/203 (32%), Gaps = 19/203 (9%)

Query: 181 TIQEGCDKFCTFCVVPYT---RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG 237
           TI  G    CTFC V      +    S    Q+ D A ++                    
Sbjct: 39  TIGRG---GCTFCNVASFADEQTQVQSI-ADQLTDRAGEIARAKKYLAYFQAYTST---- 90

Query: 238 KGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDC-LIKAHGDLDV--LMPYLHLP 294
                E     ++     +  G   +        D     ++    +        +L L 
Sbjct: 91  ---YAEVQVLKNMYEEALKAPGAEIVGLCVGTRPDCVPDAVLDLLAEYVKQGYEIWLELG 147

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           +Q+ +D+ LK +NR H    Y  I  R R++   I + +  IVG P ET  D   T+D V
Sbjct: 148 LQTANDKTLKRINRGHDFTVYETITQRARAL--GIKVCTHLIVGLPKETKADNLETLDKV 205

Query: 355 DKIGYAQAFSFKYSPRLGTPGSN 377
              G             G+  + 
Sbjct: 206 LAAGTDGIKLHGLHIVEGSTMAK 228


>gi|330964660|gb|EGH64920.1| coproporphyrinogen III oxidase [Pseudomonas syringae pv. actinidiae
           str. M302091]
          Length = 460

 Score = 54.6 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 79/220 (35%), Gaps = 15/220 (6%)

Query: 160 FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC----VVPYTRGIEIS---RSLSQVVD 212
           FE L  +       R ++ ++ I   C   C +C    V+   RG   +   R   ++  
Sbjct: 38  FELLHALRESRKALRPLSLYVHIPF-CANICYYCACNKVITKDRGRAQAYLQRLEHEIRM 96

Query: 213 EARKLI-DNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPR 271
            A  L     V ++ L G          L             L +  G   +        
Sbjct: 97  LACHLAPGQVVEQLHLGGGTPTFLSHDELRRLMARLRTHFTLLEDDSGDYGIEIDPREAD 156

Query: 272 DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAI 331
             +  L++  G        + L VQ     + +++NR  +  + R I++  R+++   ++
Sbjct: 157 WATMGLLRELG-----FNRVSLGVQDLDPTVQRAINRMQSLEDTRAIVEAARTLQFR-SV 210

Query: 332 SSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
           + D I G P +T   F  T+D + ++   +   F Y+   
Sbjct: 211 NIDLIYGLPRQTPQGFSRTVDEIIELQPDRLSVFNYAHLP 250


>gi|302546040|ref|ZP_07298382.1| lipoyl synthase [Streptomyces hygroscopicus ATCC 53653]
 gi|302463658|gb|EFL26751.1| lipoyl synthase [Streptomyces himastatinicus ATCC 53653]
          Length = 317

 Score = 54.6 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 32/219 (14%), Positives = 69/219 (31%), Gaps = 18/219 (8%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC +    G        +    A  +    +   T+ G      R    DG   
Sbjct: 85  CTRRCDFCQI--DTGKPQPLDRDEPRRVAESVQTMELRYATITGV----ARDDLEDGGAW 138

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
            +++ +  +  +     +           D L +       ++ +    V     RI K 
Sbjct: 139 LYAETVRQIHSLMPDTGVELLIPDFNADPDQLAEVFSSRPEVLAHNVETV----PRIFKR 194

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           +          ++I + R     +   S+ I+G  GE  ++    +  +   G       
Sbjct: 195 IRPGFRYERSLEVITKAREA--GLVTKSNLILGM-GEEREEISQALQDLYDAGCELITIT 251

Query: 366 KYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVS 404
           +Y      P +     V+  VK +  + L+++  E   +
Sbjct: 252 QYLR----PSARHHP-VERWVKPQEFVELKEEADEIGYA 285


>gi|298369284|ref|ZP_06980602.1| oxygen independent coproporphyrinogen III oxidase [Neisseria sp.
           oral taxon 014 str. F0314]
 gi|298283287|gb|EFI24774.1| oxygen independent coproporphyrinogen III oxidase [Neisseria sp.
           oral taxon 014 str. F0314]
          Length = 606

 Score = 54.6 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 31/202 (15%), Positives = 71/202 (35%), Gaps = 14/202 (6%)

Query: 186 CDKFCTFC-VVPYTRGIEIS-----RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
           C   C FC           S     + + ++  EA     NG       G       G  
Sbjct: 62  CANHCVFCGFYRNAWKESYSSVYTDKIIEEMAAEAEIRQGNGKIRAVYFG------GGTP 115

Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
              +    + L+ +  +   +      T   R     + KA   ++     + + VQ+  
Sbjct: 116 TALQTPDLARLIRACYQYLPIADDCEFTIEGRMSHFDIEKAQACVEAGANRISIGVQTFD 175

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
             I + + R+H   E    ++++  +  +  I  D + G P +TD  ++  ++    +  
Sbjct: 176 TAIRRRLGRKHGGDEAFAYLEKLCEI--NAVIVVDLMFGLPNQTDTVWQNDLERATALPL 233

Query: 360 AQAFSFKYSPRLGTPGSNMLEQ 381
           +   ++ ++     P + M+E+
Sbjct: 234 SGLDTYAFNLYPMLPINRMVEK 255


>gi|262189998|ref|ZP_06048303.1| coproporphyrinogen III oxidase oxygen-independent [Vibrio cholerae
           CT 5369-93]
 gi|262034121|gb|EEY52556.1| coproporphyrinogen III oxidase oxygen-independent [Vibrio cholerae
           CT 5369-93]
          Length = 462

 Score = 54.6 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 52/298 (17%), Positives = 105/298 (35%), Gaps = 24/298 (8%)

Query: 127 VVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVD----GGYNRKRGVTAFLTI 182
           VV  Q       +L++  +      +  +  +  E  +I D         +R ++ ++ I
Sbjct: 5   VVPSQQIVWDQAILDKYNYSGPRYTSYPTAVEFHEAFTIADFDMACTQYPERPLSLYIHI 64

Query: 183 QEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG 242
              C K C +C          S    + +D     I        L+G+NV         G
Sbjct: 65  PF-CHKLCYYCGCNKVITRH-SHKADEYLDVLEHEIRQ--RASLLIGRNVTQLH---FGG 117

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL-------MPYLHLPV 295
              TF      +S +  L+R  +  +   ++S  +      L+VL          + + V
Sbjct: 118 GTPTF-LTNAQISRLMTLLRSEFHFADEAEISIEIDPREIQLEVLDHLRQEGFNRVSIGV 176

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS-DFIVGFPGETDDDFRATMDLV 354
           Q  +  + K +NR         +++R + +      ++ D I G P +T   F  T+  V
Sbjct: 177 QDFNKEVQKLVNREQDEQFIFDLVERAKQL--GFRSTNLDLIYGLPKQTAATFAQTLQQV 234

Query: 355 DKIGYAQAFSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVG 411
             +   +   F Y+       +   +++ D     E+L  LQ+ +     +     +G
Sbjct: 235 LTMQPGRLSVFNYAHMPQLFAAQRKIKEADLPAAEEKLAILQQTITTLTGAGYQ-FIG 291


>gi|223042889|ref|ZP_03612937.1| lipoyl synthase [Staphylococcus capitis SK14]
 gi|222443743|gb|EEE49840.1| lipoyl synthase [Staphylococcus capitis SK14]
          Length = 305

 Score = 54.6 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 41/256 (16%), Positives = 90/256 (35%), Gaps = 20/256 (7%)

Query: 112 AEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYN 171
            + EEILR+   + + +     Y   + + R +         ++V ++ +  +I +    
Sbjct: 3   TKNEEILRKPDWLKIKLNTNENYTGLKKMMREKN-------LHTVCEEAKCPNIHECWGA 55

Query: 172 RKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQN 231
           R+     F+ +   C + C FC V      E+   L++    A  +    +  + +    
Sbjct: 56  RR--TATFMILGAVCTRACRFCAVKTGLPNEL--DLNEPERVAESVELMNLKHVVITAV- 110

Query: 232 VNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL 291
               R    D     +++ +  + E      +    S      + L         ++ + 
Sbjct: 111 ---ARDDLRDQGSNVYAETVRKVRERNPFTTIEILPSDMGGDYEALETLMASRPDILNHN 167

Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351
              V+  +      +  R T     + + R + ++PDI   S  +VG  GET ++   TM
Sbjct: 168 IETVRRLTP----RVRARATYDRTLEFLRRSKELQPDIPTKSSLMVGL-GETMEEIYETM 222

Query: 352 DLVDKIGYAQAFSFKY 367
           D +           +Y
Sbjct: 223 DDLRANDVDILTIGQY 238


>gi|330876057|gb|EGH10206.1| coproporphyrinogen III oxidase [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 460

 Score = 54.6 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 79/220 (35%), Gaps = 15/220 (6%)

Query: 160 FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC----VVPYTRGIEIS---RSLSQVVD 212
           FE L  +       R ++ ++ I   C   C +C    V+   RG   +   R   ++  
Sbjct: 38  FELLHALRESRKALRPLSLYVHIPF-CANICYYCACNKVITKDRGRAQAYLQRLEHEIRM 96

Query: 213 EARKLI-DNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPR 271
            A  L     V ++ L G          L             L +  G   +        
Sbjct: 97  LACHLAPGQVVEQLHLGGGTPTFLSHDELRRLMARLRTHFTLLEDDSGDYGIEIDPREAD 156

Query: 272 DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAI 331
             +  L++  G        + L VQ     + +++NR  +  + R I++  R+++   ++
Sbjct: 157 WATMGLLRELG-----FNRVSLGVQDLDPTVQRAINRMQSLEDTRAIVEAARTLQFR-SV 210

Query: 332 SSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
           + D I G P +T   F  T+D + ++   +   F Y+   
Sbjct: 211 NIDLIYGLPRQTPQGFSRTVDEIIELQPDRLSVFNYAHLP 250


>gi|302872530|ref|YP_003841166.1| Radical SAM domain protein [Caldicellulosiruptor obsidiansis OB47]
 gi|302575389|gb|ADL43180.1| Radical SAM domain protein [Caldicellulosiruptor obsidiansis OB47]
          Length = 613

 Score = 54.6 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 58/349 (16%), Positives = 118/349 (33%), Gaps = 41/349 (11%)

Query: 71  HIREKAAEKVYSFLGRIRNLK--NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVV 128
            +  +  E +   +   +  K  N   +E       + GC   +  +        +  V 
Sbjct: 163 FVIGEGEEVILEIIDLYKKYKFSNMTKEEFLHECAGIEGCYVPSLYDVEYNPDGTIKSV- 221

Query: 129 GPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
                  + E +      + V D D S         +++  ++R       L I  GC +
Sbjct: 222 -----TPISENVPSKVRKRIVKDLDTSYFPTKMITPLIEIVHDR-----ITLEIFRGCAR 271

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTF 247
            C FC           RS  +VV  A++L++N G  EI+L+  + + +            
Sbjct: 272 GCRFCQAGIIYRPVRFRSAEKVVQYAKELVENCGCNEISLVSLSTSDY---------PNI 322

Query: 248 SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLM-PYLHLPVQSGSDRILKSM 306
            DL   + +     ++  +    R  S  L     +++ +  P L    ++G+ R+   +
Sbjct: 323 DDLAREILKFAEDKKVNISLPSLRLDSTSL-DLLKEVEKVRKPTLTFAPEAGTQRLRDVI 381

Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDD----------FRATMDLV-- 354
           N+     +    +           I   F++G P E D+D           R     +  
Sbjct: 382 NKNIKEEDIYSTVKLAFERGFQ-NIKLYFMLGLPLEEDEDVLGIYTIAKNIREIYKDIGL 440

Query: 355 -DKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQ 402
             K+    + SF + P+  TP      Q        ++  L++ L+  +
Sbjct: 441 KKKVRITVSISF-FVPKPHTP-FQWEAQDSIESMQRKMKLLKENLKRVK 487


>gi|237793521|ref|YP_002861073.1| radical SAM domain protein [Clostridium botulinum Ba4 str. 657]
 gi|259646861|sp|C3KYN9|Y249_CLOB6 RecName: Full=UPF0313 protein CLJ_B0249
 gi|229263815|gb|ACQ54848.1| radical SAM domain protein [Clostridium botulinum Ba4 str. 657]
          Length = 639

 Score = 54.6 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 48/285 (16%), Positives = 89/285 (31%), Gaps = 56/285 (19%)

Query: 159 KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKL 217
            +  +   +GG    + V   +T   GC   C+FC + + +G  I +RS   ++ EA  +
Sbjct: 282 TYHPMYEAEGGIPAIKEVKFSITSHRGCYGSCSFCALTFHQGRVIQNRSQDSILKEANMM 341

Query: 218 ID-NGVC-EITLLG-----------------------QNVNAWRGKGLDGEKCTFSDLLY 252
            +       I  +G                       Q V     K L  +   +  LL 
Sbjct: 342 TNMKDFKGYIHDVGGPTANFRHRACKVQEEHGTCKNKQCVFPKACKNLIIDHKEYLSLLK 401

Query: 253 SLSEIKGL--------VRLRYTTSHPRD-MSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
            + +I  +        +R  Y      D     L + H     +   L +  +  SD++L
Sbjct: 402 KIRKIPNVKKVFIRSGIRFDYLMYDKNDEFFKELCEHH-----ISGQLKVAPEHISDKVL 456

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIA----ISSDFIVGFPGETDDDFRATMDLVDKIGY 359
             M +  T   Y   + +   +   I     +    +   PG            + K+GY
Sbjct: 457 NLMGKP-TRNVYDSFVKKYYDINKKIHKNQFLVPYLMSSHPGSDLKAAIELAQYIKKMGY 515

Query: 360 AQAFSFKYSPRLGTPGSNMLEQ-----------VDENVKAERLLC 393
                  + P  G+  + M              V +  K +R+  
Sbjct: 516 TPEQVQDFYPTPGSLSTTMYYTGINPLTEEKVYVPKEQKEKRMQR 560


>gi|168182188|ref|ZP_02616852.1| radical SAM domain protein [Clostridium botulinum Bf]
 gi|182674511|gb|EDT86472.1| radical SAM domain protein [Clostridium botulinum Bf]
          Length = 648

 Score = 54.6 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 48/285 (16%), Positives = 89/285 (31%), Gaps = 56/285 (19%)

Query: 159 KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKL 217
            +  +   +GG    + V   +T   GC   C+FC + + +G  I +RS   ++ EA  +
Sbjct: 282 TYHPMYEAEGGIPAIKEVKFSITSHRGCYGSCSFCALTFHQGRVIQNRSQDSILKEANMM 341

Query: 218 ID-NGVC-EITLLG-----------------------QNVNAWRGKGLDGEKCTFSDLLY 252
            +       I  +G                       Q V     K L  +   +  LL 
Sbjct: 342 TNMKDFKGYIHDVGGPTANFRHRACKVQEEHGTCKNKQCVFPKACKNLIIDHKEYLSLLK 401

Query: 253 SLSEIKGL--------VRLRYTTSHPRD-MSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
            + +I  +        +R  Y      D     L + H     +   L +  +  SD++L
Sbjct: 402 KIRKIPNVKKVFIRSGIRFDYLMYDKNDEFFKELCEHH-----ISGQLKVAPEHISDKVL 456

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIA----ISSDFIVGFPGETDDDFRATMDLVDKIGY 359
             M +  T   Y   + +   +   I     +    +   PG            + K+GY
Sbjct: 457 NLMGKP-TRNVYDSFVKKYYDINKKIHKNQFLVPYLMSSHPGSDLKAAIELAQYIKKMGY 515

Query: 360 AQAFSFKYSPRLGTPGSNMLEQ-----------VDENVKAERLLC 393
                  + P  G+  + M              V +  K +R+  
Sbjct: 516 TPEQVQDFYPTPGSLSTTMYYTGINPLTEEKVYVPKEQKEKRMQR 560


>gi|167759410|ref|ZP_02431537.1| hypothetical protein CLOSCI_01757 [Clostridium scindens ATCC 35704]
 gi|167662967|gb|EDS07097.1| hypothetical protein CLOSCI_01757 [Clostridium scindens ATCC 35704]
          Length = 363

 Score = 54.6 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 34/205 (16%), Positives = 67/205 (32%), Gaps = 20/205 (9%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR--GKGLDGE 243
           C   C +C        E  R         +K + +    I   G    A+      + G 
Sbjct: 13  CISKCKYCDFLSAPSKEGER---------QKYVKSLCKRIRSYGTLAEAYHVVSIFIGGG 63

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLI-------KAHGDLDVLMPYLHLPVQ 296
             +  D +  +S I   VR  +      +++  +        K        +  L + +Q
Sbjct: 64  TPSLLDPV-QISAIFHAVRETFMVDKDAEITIEMNPGTVSPEKLIAYRQAGISRLSIGLQ 122

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
           S  +  L+ + R HT  E+    +  R       I+ D + G P +T + ++ ++  V  
Sbjct: 123 SIRNEELEVLGRIHTFEEFLHTYEMARREGFG-NINIDLMSGIPFQTLNGWKESLKRVAD 181

Query: 357 IGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +      ++      GTP       
Sbjct: 182 LEPEHISAYSLIIEEGTPFYERYRD 206


>gi|90414076|ref|ZP_01222059.1| lipoyl synthase [Photobacterium profundum 3TCK]
 gi|90324871|gb|EAS41399.1| lipoyl synthase [Photobacterium profundum 3TCK]
          Length = 322

 Score = 54.6 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 31/212 (14%), Positives = 68/212 (32%), Gaps = 14/212 (6%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V    G  +  +  +    A+ + D  +  + +   +    R    DG   
Sbjct: 95  CTRRCPFCDV--AHGRPLPPNAEEPSHLAQTIADMKLKYVVITSVD----RDDLRDGGAQ 148

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAH-GDLDVLMPYLHLPVQSGSDRILK 304
            F D +  + E    + +       R   D  +    G    +  +        + R+ +
Sbjct: 149 HFVDCIREIREKSPEIHIETLVPDFRGRMDRALDILQGTPPNVFNHNL----ETAPRLYR 204

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
                        ++ + + + P++   S  ++G  GET ++    +  +   G      
Sbjct: 205 KARPGANYQWSLDLLKKFKEIHPEVPTKSGVMMGL-GETKEEIIQVLKDLRAHGVTMLTL 263

Query: 365 FKYSP--RLGTPGSNMLEQVDENVKAERLLCL 394
            +Y    R   P    +   + +   E  L L
Sbjct: 264 GQYLAPSRHHLPVERYVPPAEFDELKEIALEL 295


>gi|18976582|ref|NP_577939.1| putative oxidative cyclase [Pyrococcus furiosus DSM 3638]
 gi|18892145|gb|AAL80334.1| putative oxidative cyclase [Pyrococcus furiosus DSM 3638]
          Length = 537

 Score = 54.6 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 33/192 (17%), Positives = 71/192 (36%), Gaps = 17/192 (8%)

Query: 73  REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQA--EGEEILRRSPIVNVVVGP 130
           R   + K    +G+I  ++    K+  D  +VV G  A       E   +  I +VV+G 
Sbjct: 121 RNYTSVKFRELIGKINEIRE---KKKLDFKIVVGGPGAWQLEMRREEREKLKIDHVVIG- 176

Query: 131 QTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190
           +  + + +L+ +   G+           K E +  +             + +  GC + C
Sbjct: 177 EVEHVICDLVNKIMEGEAEDTIFVKGWPKVEEIPTIVAP-----SYKGLVEVMRGCGRGC 231

Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDL 250
            FC  P  R       +  +  E +  I+ G+    L  +++  ++ +     +  F   
Sbjct: 232 RFCE-PNLRVA-RFIPIENIEKEIQININAGIDHAWLHSEDIFLYKVED----RKNFYPN 285

Query: 251 LYSLSEIKGLVR 262
             ++ E+  + R
Sbjct: 286 ADAVIELFEMAR 297


>gi|327483017|gb|AEA77424.1| Coproporphyrinogen III oxidase, oxygen- independent [Vibrio
           cholerae LMA3894-4]
          Length = 462

 Score = 54.6 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 52/298 (17%), Positives = 105/298 (35%), Gaps = 24/298 (8%)

Query: 127 VVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVD----GGYNRKRGVTAFLTI 182
           VV  Q       +L++  +      +  +  +  E  +I D         +R ++ ++ I
Sbjct: 5   VVPSQQIVWDQAILDKYNYSGPRYTSYPTAVEFHEAFTIADFDMACTQYPERPLSLYIHI 64

Query: 183 QEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG 242
              C K C +C          S    + +D     I        L+G+NV         G
Sbjct: 65  PF-CHKLCYYCGCNKVITRH-SHKADEYLDVLEHEIRQ--RASLLIGRNVTQLH---FGG 117

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL-------MPYLHLPV 295
              TF      +S +  L+R  +  +   ++S  +      L+VL          + + V
Sbjct: 118 GTPTF-LTNAQISRLMTLLRSEFHFADEAEISIEIDPREIQLEVLDHLRQEGFNRVSIGV 176

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS-DFIVGFPGETDDDFRATMDLV 354
           Q  +  + K +NR         +++R + +      ++ D I G P +T   F  T+  V
Sbjct: 177 QDFNKEVQKLVNREQDEQFIFDLVERAKQL--GFRSTNLDLIYGLPKQTAATFAQTLQQV 234

Query: 355 DKIGYAQAFSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVG 411
             +   +   F Y+       +   +++ D     E+L  LQ+ +     +     +G
Sbjct: 235 LTMQPGRLSVFNYAHMPQLFAAQRKIKEADLPAAEEKLAILQQTITTLTGAGYQ-FIG 291


>gi|313895697|ref|ZP_07829253.1| radical SAM-linked protein [Selenomonas sp. oral taxon 137 str.
           F0430]
 gi|312975823|gb|EFR41282.1| radical SAM-linked protein [Selenomonas sp. oral taxon 137 str.
           F0430]
          Length = 884

 Score = 54.6 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 56/294 (19%), Positives = 102/294 (34%), Gaps = 34/294 (11%)

Query: 129 GPQTYYRLPELLERARFGKRVV-DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCD 187
           G  T  R   L  R    KRVV D D  +  +   +  +D  +NR       L +  GC 
Sbjct: 222 GNFTDLRPLHLGARPVIYKRVVKDMDDVMSVEHPIVPYIDIVHNRL-----MLDLFRGCS 276

Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCT 246
           + C FC           R+ +++   A  L +  G  E++L   +   +         C 
Sbjct: 277 RGCRFCQAGIAYRPARERTEARLRRMAHGLTEATGYDEMSLTSLSSADYS--------CL 328

Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRD-MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
              +   + + +G        S   D  S  L      +      L    ++G+ R+   
Sbjct: 329 GRLVDDLMDDYRGEQISFSLPSLRIDSFSIDLAHKMQQVRK--SGLTFAPEAGTQRLRDV 386

Query: 306 MNRRHTAYEYRQII-DRIRSVRPDIAISSDFIVGFPGETDDDF-------RATMDLVDKI 357
           +N+  T     +      R     + +   F++G P ETD+D        +  +DL  +I
Sbjct: 387 INKGVTEENLIEACGAAFRHGWKQVKLY--FMMGLPTETDEDIIGIARLAKRVVDLYTEI 444

Query: 358 G-----YAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFN 406
                         + P+  TP      Q+       R   L++ + ++ +SF+
Sbjct: 445 RGRRGVKVTVSVSCFVPKPYTP-FQWFGQLSIEEFQRRQQLLKEHITDRSISFH 497


>gi|302337114|ref|YP_003802320.1| hypothetical protein Spirs_0581 [Spirochaeta smaragdinae DSM 11293]
 gi|301634299|gb|ADK79726.1| conserved hypothetical protein [Spirochaeta smaragdinae DSM 11293]
          Length = 354

 Score = 54.6 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 35/241 (14%), Positives = 68/241 (28%), Gaps = 34/241 (14%)

Query: 185 GCDKF-------CTFC------------VVPYTRGIEISRS-LSQVV--DEARKLIDNGV 222
           GC          C +C              P++     S             +K ID G 
Sbjct: 52  GCPNRTPDGRGGCFYCDEAGSRAAYQETNEPHSCLRSASGPDPDDPYWQTWMKKQIDEGG 111

Query: 223 CEI-TLLGQNVNAWRGKGLDGEK---CTFSDLLYSLSEIKGLVRLRYT--TSHPRDMSDC 276
             +    G +      +   G          +   L  +     L          +    
Sbjct: 112 AFLSNRYGVHSFILYVQAFSGTWAPVPRLKHIYDYLLSLASFRELIVGTRPDCVDEEVVK 171

Query: 277 LIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFI 336
           L+ ++     +  +L L +QS  D+ L+ + R H    + +     ++    +  S   I
Sbjct: 172 LLSSYASSLDMDVWLELGLQSYHDQTLRHIGRGHDTTAFERAYKTAKA--GGLKCSVHLI 229

Query: 337 VGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE----QVDENVKAERLL 392
            G PGE D     ++  + ++              GT  +        +V +     RL+
Sbjct: 230 FGLPGEDDAMMEESVRRLARLRPDGVKIHNLHIAEGTRFAQWWREGRLEVPDTSHHLRLV 289

Query: 393 C 393
            
Sbjct: 290 A 290


>gi|302775376|ref|XP_002971105.1| hypothetical protein SELMODRAFT_64239 [Selaginella moellendorffii]
 gi|300161087|gb|EFJ27703.1| hypothetical protein SELMODRAFT_64239 [Selaginella moellendorffii]
          Length = 410

 Score = 54.6 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 38/203 (18%), Positives = 64/203 (31%), Gaps = 11/203 (5%)

Query: 186 CDKFCTFCVVPYTRGIEISR----SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD 241
           C + C +C  P     E S     ++   VD   + I           Q V    G    
Sbjct: 11  CKRRCHYCDFPIVALGESSSNAGSTMESYVDLVCQEIAAERSPSRGALQTVFFGGGTPSL 70

Query: 242 GEKCTFSDLLYSLSEIKGLVR----LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQS 297
                   ++ +L    G  R           P   S   + A       +  + L VQ+
Sbjct: 71  IPIPLLQRIIQALEAKHGFSRDAPMEISMEMDPGTFSRDYL-AEAIQSCGINRVSLGVQA 129

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
             D +LK   R H   +  Q I+ I+    + ++  D I   P  T   +R +++     
Sbjct: 130 FDDDLLKLCGRSHCLDDVFQSIEWIKDSLQNWSL--DLISSLPHHTLASWRKSLEQAIAA 187

Query: 358 GYAQAFSFKYSPRLGTPGSNMLE 380
             A    +      GT   N+ +
Sbjct: 188 SPAHVSIYDLQIEQGTKFGNLYK 210


>gi|289450717|ref|YP_003475093.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Clostridiales genomosp. BVAB3 str. UPII9-5]
 gi|289185264|gb|ADC91689.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Clostridiales genomosp. BVAB3 str. UPII9-5]
          Length = 421

 Score = 54.6 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 38/217 (17%), Positives = 79/217 (36%), Gaps = 24/217 (11%)

Query: 186 CDKFCTFCVVPYTRGIEISRSL--SQVVDEARKLIDNGVC----EITLLGQNVNAWRGKG 239
           C++ C +C      G E         +V+E R      +      I L   N  +     
Sbjct: 18  CERKCGYCDFNSYAGKEKYIEPYVDALVNEIRFNFRKMLRAFGSSIPLSELNFGSEGFSS 77

Query: 240 LD--------GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHG------DLD 285
            D        G           + EI  ++R  +  +   +++     +        ++ 
Sbjct: 78  FDMALRTVYFGGGTPSLLSAQQIGEIIDVLRHTFGLTPNCEITLEANPSSASALDWSEVK 137

Query: 286 VL-MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI-RSVRPDIAISSDFIVGFPGET 343
              +  + + +QS +DR+L  + R HT  ++      + R+   +I  S D ++G P ++
Sbjct: 138 RFGINRVSVGLQSYNDRLLNVLGRIHTCRDFDCTTAALQRAGLENI--SCDLMIGLPTQS 195

Query: 344 DDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
             D   +++ V K GY     +      GTP +++  
Sbjct: 196 LADIHMSLEHVIKSGYRHISVYSLIIEPGTPFASLYG 232


>gi|256618883|ref|ZP_05475729.1| coproporphyrinogen III oxidase [Enterococcus faecalis ATCC 4200]
 gi|256598410|gb|EEU17586.1| coproporphyrinogen III oxidase [Enterococcus faecalis ATCC 4200]
          Length = 382

 Score = 54.6 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 49/254 (19%), Positives = 98/254 (38%), Gaps = 28/254 (11%)

Query: 177 TAFLTIQEGCDKFCTFCVV--PYTRGIEISRSLSQVVDEARKLI----DNGVCEITLLGQ 230
           +A++ I   C+  C +C     +  G  +   +  ++ E +       +  +  I + G 
Sbjct: 5   SAYIHIPF-CEHICYYCDFNKVFLEGQPVDEYIQSLLKEIQLTQALYPEQEMKTIYIGGG 63

Query: 231 NVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT-SHPRDMSDCLIKAHGDLDVLMP 289
              +   K LD        +   L       R  +T  ++P D++   ++   +    + 
Sbjct: 64  TPTSLSAKQLD---VLLKGVREQL---TFDDRNEFTVEANPGDLTQEKLQVMKNYG--VN 115

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI-RSVRPDIAISSDFIVGFPGETDDDFR 348
            L + VQ+  DR+LK + R+HTA +  + +  + +    +++I  D I   PG+T + FR
Sbjct: 116 RLSMGVQTFDDRLLKKIGRKHTAADVYETMKFLEKENFTNVSI--DLIYALPGQTLESFR 173

Query: 349 ATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE----QVDENVKA-----ERLLCLQKKLR 399
            T+     +       +       T   N +     Q+ E         E +  ++KK R
Sbjct: 174 DTLTRALALDLPHYSLYSLILENKTMFMNWVRQGRLQLPEEEIEAQMFDETIEVMEKKGR 233

Query: 400 EQQVSFNDACVGQI 413
            Q    N A  G+ 
Sbjct: 234 HQYEVSNFALTGKE 247


>gi|306755814|sp|C5GPL2|LIPA_AJEDR RecName: Full=Lipoyl synthase, mitochondrial; AltName: Full=Lipoate
           synthase; Short=LS; Short=Lip-syn; AltName: Full=Lipoic
           acid synthase; Flags: Precursor
 gi|239613800|gb|EEQ90787.1| lipoic acid synthetase [Ajellomyces dermatitidis ER-3]
 gi|327350017|gb|EGE78874.1| lipoic acid synthetase [Ajellomyces dermatitidis ATCC 18188]
          Length = 430

 Score = 54.6 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 40/259 (15%), Positives = 92/259 (35%), Gaps = 16/259 (6%)

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQ-EGCDKFCTFCVVPYTR 199
           +R +   R ++     E+          G + K   TA + +  + C + C FC V  + 
Sbjct: 126 KRIKNDLRGLNLHTVCEEARCPNISDCWGGSSKSAATATIMLMGDTCTRGCRFCSVKTSN 185

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
                    +  + A  L   G+  + L   +    R    DG    F++ +  + +   
Sbjct: 186 KPP-PLDPHEPENTAEALSRWGLGYVVLTSVD----RDDLADGGARHFAETVLKIKQKAP 240

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDV-LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
            + +   T         ++    +  + +  +    V++ +  +     RR T  +  ++
Sbjct: 241 NILVECLTGD-YAGDLEMVALVANSGLDVYAHNVETVEALTPFVRD---RRATFQQSLRV 296

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           +   ++ +P++   +  ++G  GET+     T+  +  I        +Y  R       +
Sbjct: 297 LKAAKATKPELITKTSLMLGL-GETEAQLWDTLRALRAIDVDVVTFGQYM-RPTKRHMAV 354

Query: 379 LEQVDENVK---AERLLCL 394
            E V  +V     ER L +
Sbjct: 355 HEYVRPDVFDMWKERALEM 373


>gi|261193737|ref|XP_002623274.1| lipoic acid synthetase [Ajellomyces dermatitidis SLH14081]
 gi|306755815|sp|C5JVC1|LIPA_AJEDS RecName: Full=Lipoyl synthase, mitochondrial; AltName: Full=Lipoate
           synthase; Short=LS; Short=Lip-syn; AltName: Full=Lipoic
           acid synthase; Flags: Precursor
 gi|239588879|gb|EEQ71522.1| lipoic acid synthetase [Ajellomyces dermatitidis SLH14081]
          Length = 430

 Score = 54.6 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 40/259 (15%), Positives = 92/259 (35%), Gaps = 16/259 (6%)

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQ-EGCDKFCTFCVVPYTR 199
           +R +   R ++     E+          G + K   TA + +  + C + C FC V  + 
Sbjct: 126 KRIKNDLRGLNLHTVCEEARCPNISDCWGGSSKSAATATIMLMGDTCTRGCRFCSVKTSN 185

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
                    +  + A  L   G+  + L   +    R    DG    F++ +  + +   
Sbjct: 186 KPP-PLDPHEPENTAEALSRWGLGYVVLTSVD----RDDLADGGARHFAETVLKIKQKAP 240

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDV-LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
            + +   T         ++    +  + +  +    V++ +  +     RR T  +  ++
Sbjct: 241 NILVECLTGD-YAGDLEMVALVANSGLDVYAHNVETVEALTPFVRD---RRATFQQSLRV 296

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           +   ++ +P++   +  ++G  GET+     T+  +  I        +Y  R       +
Sbjct: 297 LKAAKATKPELITKTSLMLGL-GETEAQLWDTLRALRAIDVDVVTFGQYM-RPTKRHMAV 354

Query: 379 LEQVDENVK---AERLLCL 394
            E V  +V     ER L +
Sbjct: 355 HEYVRPDVFDMWKERALEM 373


>gi|149045298|gb|EDL98384.1| CDK5 regulatory subunit associated protein 1-like 1 (predicted),
          isoform CRA_a [Rattus norvegicus]
          Length = 133

 Score = 54.6 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 1/44 (2%)

Query: 14 VSQIVDQCIVP-QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERV 56
           S   D  I   Q+ +++++GC  N  D   M     + GY+  
Sbjct: 51 PSPPSDSTIPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKIT 94


>gi|323974269|gb|EGB69398.1| oxygen-independent coproporphyrinogen III oxidase [Escherichia coli
           TW10509]
          Length = 457

 Score = 54.6 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 43/269 (15%), Positives = 91/269 (33%), Gaps = 30/269 (11%)

Query: 157 EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS-------LSQ 209
           ED  E+  +       +R ++ ++ I   C K C FC        +  ++         +
Sbjct: 34  EDFGEQAFLQAVARYPERPLSLYVHIPF-CHKLCYFCGCNKIVTRQQHKADQYLDALEQE 92

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE-----IKGLVRLR 264
           +V  A       + ++   G       G      K   S L+  L E         + + 
Sbjct: 93  IVHRAPLFAGRHISQLHWGG-------GTPTYLNKAQISRLMKLLRENFQFNADAEISIE 145

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
                PR++   ++            L + VQ  +  + + +NR         +++  R 
Sbjct: 146 V---DPREIELDVLDHLRAEG--FNRLSMGVQDFNKEVQRLVNREQDEDFIFALLNHARE 200

Query: 325 VRPDIAISS-DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQV 382
           +      ++ D I G P +T + F  T+  V ++   +   F Y+       +   ++  
Sbjct: 201 I--GFTSTNIDLIYGLPKQTPESFAFTLKRVAELNPDRLSVFNYAHLPTIFAAQRKIKDA 258

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVG 411
           D     ++L  LQ+ +     S     +G
Sbjct: 259 DLPSPQQKLDILQETIAFLTQSGYQ-FIG 286


>gi|242129430|gb|ACS83765.1| coproporphyrinogen III oxidase [Nonomuraea sp. WU8817]
          Length = 414

 Score = 54.6 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 40/216 (18%), Positives = 71/216 (32%), Gaps = 33/216 (15%)

Query: 186 CDKFCTFC----VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK--- 238
           C+  C FC     VP         +        R+ +   V +I      +     +   
Sbjct: 30  CNSKCHFCDWVTEVPLADLRL---TPDSSPR--RRYVAALVKQIETHAPTLGGLGYRPEV 84

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDC------------LIKAHGDLDV 286
              G        +  +  + G +  R+      + +              L +A G    
Sbjct: 85  MYWGGGTASILTIEEIEAVAGALAARFDLGGLVEATIEGSPESMDPGKLKLFRAIG---- 140

Query: 287 LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDD 346
               + + VQ+  D  L+ + R H+A +  + +        D  I+ D IVGFPG+  D+
Sbjct: 141 -FNRISIGVQAFDDARLRRIGRVHSAEQAERAVRMAADAGFD-NINIDLIVGFPGQGADE 198

Query: 347 FRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
              T+     +       + Y P   T G+ M  QV
Sbjct: 199 VSRTIQHAVTLPVNHFSVYPYRP---TGGTVMRRQV 231


>gi|189468036|ref|ZP_03016821.1| hypothetical protein BACINT_04430 [Bacteroides intestinalis DSM
           17393]
 gi|189436300|gb|EDV05285.1| hypothetical protein BACINT_04430 [Bacteroides intestinalis DSM
           17393]
          Length = 309

 Score = 54.6 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 41/203 (20%), Positives = 71/203 (34%), Gaps = 13/203 (6%)

Query: 188 KFCTFCVV----PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
             CT+C      P     E S +    ++E +    +   E+  L             GE
Sbjct: 44  GGCTYCNNQTFNPEYCRTEKSVTQQ--LEEGKIFFAHKYPEMKYLA---YFQAYTNTYGE 98

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV-LMPYLHLPVQSGSDRI 302
                        +  +V L   T  P  MSD L+    ++       +   ++S +D  
Sbjct: 99  LEALKRKYEEALTVPDVVGLVIGT-RPDCMSDALLHYLEEVKKHTFLLVEYGIESTNDAT 157

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           L+ +NR HT  +    ++  R+    I      I+G PGE  +D  A    + +I     
Sbjct: 158 LRRINRGHTYQDTVDAVE--RTAGCGILTGGHVILGLPGERHEDLVAQASTLSRIPLTTL 215

Query: 363 FSFKYSPRLGTPGSNMLEQVDEN 385
              +     GT  ++  EQ  E+
Sbjct: 216 KMHQLQLIRGTRMAHEYEQHPED 238


>gi|126697027|ref|YP_001091913.1| Fe-S oxidoreductase [Prochlorococcus marinus str. MIT 9301]
 gi|126544070|gb|ABO18312.1| Fe-S oxidoreductase [Prochlorococcus marinus str. MIT 9301]
          Length = 539

 Score = 54.6 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 38/231 (16%), Positives = 70/231 (30%), Gaps = 19/231 (8%)

Query: 133 YYRLPELLERARFG--KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190
                +L+     G  K   D  Y      E    ++GG          +  + GC   C
Sbjct: 212 QKPRSKLIHEQPSGTVKTACDYKYIKSKWPEFDWYIEGGE-----YYVGVQTKRGCPHNC 266

Query: 191 TFCVVPYTRGIEISR-SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSD 249
            FCV     G ++    + +V+ E ++L D GV             +    D +      
Sbjct: 267 CFCVYTVVEGKQVRVNPVKEVISEMKQLYDLGVRGFWFTDAQFIPAKKHIEDAKT----- 321

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
           LL ++ +               ++   L +   D    M Y  + + SGS  +++ M   
Sbjct: 322 LLQAIKDQGWDDINWAAYIRADNIDAELAQLMVDTG--MSYFEIGITSGSQELVRKMRLA 379

Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGF--PGETDDDFRATMDLVDKIG 358
           +           +  V+            F    ET    R T+    ++ 
Sbjct: 380 YDLETVLNNCRML--VKSGFKNHVSVNYSFNVFDETPSTIRQTIAYHRELE 428


>gi|116073337|ref|ZP_01470599.1| hypothetical protein RS9916_32842 [Synechococcus sp. RS9916]
 gi|116068642|gb|EAU74394.1| hypothetical protein RS9916_32842 [Synechococcus sp. RS9916]
          Length = 444

 Score = 54.6 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 45/213 (21%), Positives = 72/213 (33%), Gaps = 14/213 (6%)

Query: 175 GVTAFLTIQEGCDKFCTFC---VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLL--G 229
             +A++ I   C + C +C   VVP   G              R  +     EI L   G
Sbjct: 28  PRSAYVHIPF-CHRRCFYCDFAVVPL--GDHAGTPSGTGSGSIRTYLSQLHKEIALAPKG 84

Query: 230 QNVNAWR---GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV 286
             +       G           DLL +L    G       T      S  L      +  
Sbjct: 85  PPLATLYIGGGTPSLLTPIQIRDLLEALRRQFGFQAGAEITLEMDPASFDLSDLQALIKA 144

Query: 287 LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS---DFIVGFPGET 343
            +  + L  QS  DR+L+ + RRH   + ++    +R    D A+ S   D I   P +T
Sbjct: 145 GVNRVSLGGQSFDDRVLEGLGRRHRRGDLQKCCRWLRDGLRDGALRSWSLDLIRNLPEQT 204

Query: 344 DDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
            + + A ++L    G      +  +   GT  +
Sbjct: 205 LEAWSAQLELALTTGAPHLSIYDLAVEPGTVFA 237


>gi|238923854|ref|YP_002937370.1| hypothetical protein EUBREC_1482 [Eubacterium rectale ATCC 33656]
 gi|238875529|gb|ACR75236.1| hypothetical protein EUBREC_1482 [Eubacterium rectale ATCC 33656]
          Length = 302

 Score = 54.6 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 33/196 (16%), Positives = 69/196 (35%), Gaps = 13/196 (6%)

Query: 189 FCTFCVV--PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLG--QNVNAWRGKGLDGEK 244
            C +C          + S S+ + +  A++ + +       +   Q         +D  +
Sbjct: 40  GCLYCSAGGSGDFAADRSLSIKEQLSAAKEKVASKSSCEHFIAYFQAFTNTY-APVDYLR 98

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMP-YLHLPVQSGSDRIL 303
             F + +         V +    +     S  +     +L+ + P ++ L +Q+     L
Sbjct: 99  RIFYEAIE-----DPSVAVLSIGTRTDCFSAEIYDLLSELNEIKPVWVELGLQTIHRSTL 153

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
            +MN      ++  + D +R     I + +  I+G P ET      ++D V K G     
Sbjct: 154 DAMNTHTCVDDFIIVTDELRRR--GIKVIAHLILGLPHETRGMMLESVDFVAKSGIFGVK 211

Query: 364 SFKYSPRLGTPGSNML 379
                   GTP ++M 
Sbjct: 212 LQLLHVLKGTPLADMY 227


>gi|88809390|ref|ZP_01124898.1| hypothetical protein WH7805_09569 [Synechococcus sp. WH 7805]
 gi|88786609|gb|EAR17768.1| hypothetical protein WH7805_09569 [Synechococcus sp. WH 7805]
          Length = 514

 Score = 54.6 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 49/235 (20%), Positives = 90/235 (38%), Gaps = 26/235 (11%)

Query: 174 RGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVN 233
                 + +   C + C FC+  Y      + SL   +  A +        + LLG +V 
Sbjct: 187 WPDIHMVEVVRSCPELCRFCLASYLTLPFRTPSLDDGLIPAVERGLKATRRLGLLGASVT 246

Query: 234 AWRGKGLDGEKCTFSDLLYSLS-EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLH 292
                        F +LL  L+ +    VR+  ++     ++  L     +       L 
Sbjct: 247 QH---------PQFDELLRWLNTDRFNDVRVSVSSVRAATVTPALASGLAN--RGSKSLT 295

Query: 293 LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD--IAISSDFIVGFPGETDDDFRAT 350
           + ++SGS+R+ + +N++ ++    +I    R  +     A+    +VG P E D+D  AT
Sbjct: 296 IAIESGSERMRRVVNKKLSSE---EIDAAARHAKQGGLSALKLYGMVGLPSEDDEDVEAT 352

Query: 351 MDLVDKIGYAQA------FSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLR 399
            DL+ ++  A            + P+  TP         E  K  RL  L K+L+
Sbjct: 353 ADLLLQLKKATPGLRFTLGVSTFVPKAHTP-FQWQGVRPEADK--RLKRLGKRLK 404


>gi|268678902|ref|YP_003303333.1| radical SAM protein [Sulfurospirillum deleyianum DSM 6946]
 gi|268616933|gb|ACZ11298.1| Radical SAM domain protein [Sulfurospirillum deleyianum DSM 6946]
          Length = 564

 Score = 54.6 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 38/218 (17%), Positives = 73/218 (33%), Gaps = 16/218 (7%)

Query: 176 VTAFLTIQEGCDKF-------CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLL 228
            +  + +  GC          CTFC     R  +I      V ++  K I          
Sbjct: 20  FSIPVNLDFGCPNRERDGNGGCTFCPEHGARAAQI-ADAKNVEEQIEKAIVFAKKRYNAT 78

Query: 229 GQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM--SDCLIKAHGDLD- 285
                A   +   G   +      +   +  L   +      R    S+  ++   +L+ 
Sbjct: 79  S---FALYIQAYTGTFASILKQKEAYERLLNLYPFKALHIGTRPDCLSEATLEYLAELNS 135

Query: 286 VLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDD 345
            L   + L VQS  D  L+ +NR H+A+   + I+R+      + + +  I+G P E+  
Sbjct: 136 RLDVVVELGVQSLQDVSLERINRGHSAHASLEAIERLH--VKGLKVYAHLILGLPDESFC 193

Query: 346 DFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
            +  ++  + + G             GT  +   E   
Sbjct: 194 MWEESVKGLVEAGIDGIKFHNLHIISGTQLAREYEVAP 231


>gi|269125788|ref|YP_003299158.1| Radical SAM domain-containing protein [Thermomonospora curvata DSM
           43183]
 gi|268310746|gb|ACY97120.1| Radical SAM domain protein [Thermomonospora curvata DSM 43183]
          Length = 640

 Score = 54.6 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 54/315 (17%), Positives = 102/315 (32%), Gaps = 51/315 (16%)

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
             V+D D     K   + + +  + R       + I  GC + C FC           RS
Sbjct: 240 HTVMDLDAWPYPKKPLVPLAETVHERYS-----VEIFRGCTRGCRFCQAGMITRPVRERS 294

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE--IKGLVRLR 264
           ++ + +      DNG+ +       + +             +D+   L++        L 
Sbjct: 295 ITTIGEMV----DNGLKQSGFTEVGLLSLSSADH----SEIADIAKGLADRYEGTNTSLS 346

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
             ++     +  L             L    + GS+R+ + +N+  +  +  + +    +
Sbjct: 347 LPSTRVDAFNIELANEFSRNGR-RSGLTFAPEGGSERLRRVINKTVSEEDLIRTVTAAYA 405

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKI---------GYAQAFSF---KYSPRLG 372
                 +   F+ G P ETD+D  A  D+  ++               +     + P+  
Sbjct: 406 SGWR-QVKLYFMCGLPTETDEDVLAIADMARRVIAAGREVTGRRDIRCTVSIGGFVPKPH 464

Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLR---------------------EQQVSFNDACVG 411
           TP      Q D      RL  L+ +LR                     E  +S  D  VG
Sbjct: 465 TP-FQWAAQCDHQTIDRRLRALRDELRRDREYGRAIGLRYHEGKPSIIEGLLSRGDRRVG 523

Query: 412 QIIEVLIEKHGKEKG 426
           +II  + E  G+  G
Sbjct: 524 KIIRAVWEDGGRFDG 538


>gi|260891127|ref|ZP_05902390.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Leptotrichia hofstadii F0254]
 gi|260859154|gb|EEX73654.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Leptotrichia hofstadii F0254]
          Length = 463

 Score = 54.6 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 36/232 (15%), Positives = 85/232 (36%), Gaps = 25/232 (10%)

Query: 186 CDKFCTFCVVPYTRGIEISRS--LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
           CDK C +C       +E      +  ++ E R         I   G            G 
Sbjct: 19  CDKKCEYCDFCTFVRMEKEYRKYVDYLIREIRMYPKFKYDTIYFGG------------GT 66

Query: 244 KCTFS--DLLYSLSEIKGLVRLRYTT-SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300
                   +   + E+        T   +P DM+   +K   ++ +    L + +QS  +
Sbjct: 67  PSLLPVGMIKEIMDELDWTGNAEITLELNPTDMTLEKLKEIREIGI--NRLSIGIQSFQN 124

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
            +L  + R+H++ +   +    R    +  I+ D + G P ++ +D +  ++++ ++   
Sbjct: 125 HVLDFIGRQHSSDDAVNVYKMARKAGFN-NITVDLMFGIPNQSIEDLQKDLNILKELKPE 183

Query: 361 QAFSFKYSPRLGTPGSNMLEQ-----VDENVKAERLLCLQKKLREQQVSFND 407
               +      GT   + L++     +D++V+A+    + +   E      +
Sbjct: 184 NVSIYSLIWEEGTVFWSKLQKGILSEIDQDVEAQMYEMIIEFFNENGYCHYE 235


>gi|218887904|ref|YP_002437225.1| radical SAM protein [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218758858|gb|ACL09757.1| conserved hypothetical radical SAM protein [Desulfovibrio vulgaris
           str. 'Miyazaki F']
          Length = 372

 Score = 54.6 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 30/137 (21%), Positives = 54/137 (39%), Gaps = 3/137 (2%)

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300
            G       +L  L  + G+V     T  P  + +  +     L +   +L L +QS  D
Sbjct: 96  YGPIDKLRHVLGVLPVLPGIVGAAVGT-RPDCVDNERLDLVAALPLPEVWLELGLQSAHD 154

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
             L  +NR H A   ++ +    +    + + +  I G PGE+ DDF A++D V+++   
Sbjct: 155 ATLARINRGHDAAASKRAVREAAAR--GLRVCAHLIAGLPGESGDDFLASVDWVNRLPVH 212

Query: 361 QAFSFKYSPRLGTPGSN 377
                       T  + 
Sbjct: 213 GVKFHGLYVCEHTALAR 229


>gi|22298117|ref|NP_681364.1| lipoyl synthase [Thermosynechococcus elongatus BP-1]
 gi|47115804|sp|Q8DLC2|LIPA2_THEEB RecName: Full=Lipoyl synthase 2; AltName: Full=Lip-syn 2; AltName:
           Full=Lipoate synthase 2; AltName: Full=Lipoic acid
           synthase 2; AltName: Full=Sulfur insertion protein lipA2
 gi|22294295|dbj|BAC08126.1| lipoic acid synthetase [Thermosynechococcus elongatus BP-1]
          Length = 290

 Score = 54.6 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 32/193 (16%), Positives = 63/193 (32%), Gaps = 22/193 (11%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V             +    A  +   G+  + L        R    D    
Sbjct: 63  CTRACAFCQVEKGHAPAA-VDPEEPTKIAAAVATLGLRYVVLTSV----ARDDLPDQGAG 117

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLD-VLMPYLHLPVQSGS-DRIL 303
            F   + ++       R R   +    +S       G L         +  Q    +  L
Sbjct: 118 QFVATMAAI-------RQRCPGTEIEVLSPDFRMDRGRLSQRDCIAQIVAAQPACYNHNL 170

Query: 304 KSMNR-------RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
           +++ R         T     +++  ++ + PDI   S  ++G  GET+ +   T+  + +
Sbjct: 171 ETVRRLQGPVRRGATYESSLRVLATVKELNPDIPTKSGLMLGL-GETEAEIIETLKDLRR 229

Query: 357 IGYAQAFSFKYSP 369
           +G  +    +Y P
Sbjct: 230 VGCDRLTLGQYLP 242


>gi|325845625|ref|ZP_08168909.1| coproporphyrinogen dehydrogenase [Turicibacter sp. HGF1]
 gi|325488323|gb|EGC90748.1| coproporphyrinogen dehydrogenase [Turicibacter sp. HGF1]
          Length = 378

 Score = 54.6 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 40/236 (16%), Positives = 83/236 (35%), Gaps = 25/236 (10%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEK 244
           CD  CT+C  P        R    +    ++        + L  QNV     + +  G  
Sbjct: 12  CDHICTYCDFPKLLTKGQ-RHAEYIEALIQE--------LKLYQQNVGFSNLQSIYIGGG 62

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL-------MPYLHLPVQS 297
              +  +  +  +   +  +   +  ++ S      +   D +       +    L VQ+
Sbjct: 63  TPTALSVEQIQPVFDFLTEQIQMNQIQEFSIEANPENLTRDKIQYLKAQGVNRFSLGVQT 122

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSV-RPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
             + +LK + R+H A E  Q +  ++     +I +  D I   PG+T D+ R  +  V  
Sbjct: 123 FHESLLKRIGRKHQAQEVIQAVANLKQCGIKNINL--DLIYAIPGQTLDELRDDLRQVIS 180

Query: 357 IGYAQAFSFKYSPRLGT--PGSNMLEQV---DENVKAERLLCLQKKLREQQVSFND 407
           +      ++       T    + M +Q+   D  ++A+      + L E      +
Sbjct: 181 LEVEHISAYSLIVEEHTQLYLAYMRDQIELTDNEIEAKMYEVTIETLTEAGYEHYE 236


>gi|282897964|ref|ZP_06305959.1| Cobalamin B12-binding [Raphidiopsis brookii D9]
 gi|281197108|gb|EFA72009.1| Cobalamin B12-binding [Raphidiopsis brookii D9]
          Length = 358

 Score = 54.6 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 35/223 (15%), Positives = 73/223 (32%), Gaps = 23/223 (10%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK 238
           +    GC   C FC +    G +  +++  Q++ E   L   G      +  +       
Sbjct: 3   VQFSRGCPFQCEFCDIIVLYGRKPRTKTPEQLLAELDCLYRLGWRRGIFMVDD------- 55

Query: 239 GLDGEKCTFSDLLYSLS--EIKGLVRLRYTTSHPRDM--SDCLIKAHGDLDVLMPYLHLP 294
              G K     LL  L    ++     R+ T    D+     L++   +       + L 
Sbjct: 56  NFIGNKRNVKLLLKELKVWMVEHEYPFRFDTEASVDLAQDPELMELMVESG--FAAVFLG 113

Query: 295 VQSGSDRILKSMNRR-HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
           +++  +  L+   +  +T     + ++ I  ++  +   + FI+GF GE        +  
Sbjct: 114 IETPDEDSLQLTKKFQNTRSSLAESVETI--IKTGLRPMAGFIIGFDGEQKGAGDRIVRF 171

Query: 354 VDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQK 396
            ++                T   + L+      K  RL   Q 
Sbjct: 172 AEQAAIPSTTFAMLQALPNTALWHRLQ------KEGRLRENQD 208


>gi|258406343|ref|YP_003199085.1| hypothetical protein Dret_2223 [Desulfohalobium retbaense DSM 5692]
 gi|257798570|gb|ACV69507.1| conserved hypothetical protein [Desulfohalobium retbaense DSM 5692]
          Length = 329

 Score = 54.6 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 43/200 (21%), Positives = 71/200 (35%), Gaps = 18/200 (9%)

Query: 188 KFCTFCVVPYTRGIEIS---RSLSQVVDEARKLIDNGVCEITLLG--QNVNAWRGKGLDG 242
             C FC  P   G   +   R+L++  D  R            L   Q+ +   G     
Sbjct: 41  HGCIFCN-PSGSGTGQAAEGRTLAEQWDGWRDRFRRRYKARRFLAYLQSFSNSYGPVH-- 97

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMP--YLHLPVQSGSD 300
                 D L +L ++ G+          R       K     D+ +P  +L + +QS +D
Sbjct: 98  RFAGLLDQLRALPDVSGI------CIGTRPDCLEPAKLDLLGDLDLPEVWLDIGLQSSND 151

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
             L  +NR H A  +   +    +    + I +  I G PGET+ DF  T+  V+++   
Sbjct: 152 ETLARINRGHDAATFAATVRA--AAARGLKICAHLIAGLPGETEPDFLETVRFVNELPVH 209

Query: 361 QAFSFKYSPRLGTPGSNMLE 380
                       TP +   E
Sbjct: 210 GVKFHNLYVCHNTPLAEWFE 229


>gi|237730613|ref|ZP_04561094.1| lipoyl synthase [Citrobacter sp. 30_2]
 gi|283834065|ref|ZP_06353806.1| lipoyl synthase [Citrobacter youngae ATCC 29220]
 gi|226906152|gb|EEH92070.1| lipoyl synthase [Citrobacter sp. 30_2]
 gi|291070209|gb|EFE08318.1| lipoyl synthase [Citrobacter youngae ATCC 29220]
          Length = 321

 Score = 54.6 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 31/183 (16%), Positives = 67/183 (36%), Gaps = 12/183 (6%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V    G  ++   ++ +  A+ + D  +  + +   +    R    DG   
Sbjct: 94  CTRRCPFCDV--AHGRPVAPDANEPLKLAQTIADMALRYVVITSVD----RDDLRDGGAQ 147

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAH-GDLDVLMPYLHLPVQSGSDRILK 304
            F+D + ++ E    +++       R   D  +         +  +    V     RI +
Sbjct: 148 HFADCITAIREKSPSIKIETLVPDFRGRMDRALDILTATPPDVFNHNLENV----PRIYR 203

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
           ++          ++++R +   P+I   S  +VG  GET+ +    M  +   G      
Sbjct: 204 NVRPGADYNWSLKLLERFKEAHPEIPTKSGLMVGL-GETNAEIIEVMRDLRSHGVTMLTL 262

Query: 365 FKY 367
            +Y
Sbjct: 263 GQY 265


>gi|256375478|ref|YP_003099138.1| lipoyl synthase [Actinosynnema mirum DSM 43827]
 gi|255919781|gb|ACU35292.1| lipoic acid synthetase [Actinosynnema mirum DSM 43827]
          Length = 334

 Score = 54.6 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 43/252 (17%), Positives = 84/252 (33%), Gaps = 29/252 (11%)

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQ-EGCDKFCTFCVVPYTRGIEISRSLSQVVD 212
           ++V ++    +I +   +R+    A   I  E C + C FC +    G        +   
Sbjct: 52  HTVCEEAGCPNIYECWEDRE----ATFLIGGEQCTRRCDFCQI--DTGKPADLDRDEPRR 105

Query: 213 EARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
            A  +   G+   T+ G      R    DG    +++ +  +  +     +         
Sbjct: 106 VAESVQAMGLRYSTVTGV----ARDDLADGGAWLYAETVRQIHALNPGTGVELLIPDFNA 161

Query: 273 MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAIS 332
           + + L +       ++ +    V     RI K +          ++I R R     +   
Sbjct: 162 VPEQLAEVFDSRPEVLAHNLETV----PRIFKRIRPAFRYERSLEVITRAREA--GLVTK 215

Query: 333 SDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY---SPRLGTPGSNMLEQVDENVKAE 389
           S+ I+G  GET ++    +  +   G       +Y   SPR           V+  VK E
Sbjct: 216 SNLILGM-GETPEEVAEALRDLHAAGCEIITITQYLRPSPRHH--------PVERWVKPE 266

Query: 390 RLLCLQKKLREQ 401
             L  ++   E 
Sbjct: 267 EFLVHKETAEEL 278


>gi|213582968|ref|ZP_03364794.1| lipoyl synthase [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-0664]
          Length = 293

 Score = 54.6 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 42/258 (16%), Positives = 85/258 (32%), Gaps = 19/258 (7%)

Query: 118 LRRSPIVNVVVGPQTYYRLPELLERAR-------FGKRVVDTDYSVEDKFERLSIVDGGY 170
           +   P+ NVV       R PE ++           G +       +    E  S  +   
Sbjct: 19  MALIPVKNVVTERDALLRKPEWMKIKLPADSTRIQGIKAAMRKNGLHSVCEEASCPNLAE 78

Query: 171 NRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQ 230
               G   F+ +   C + C FC V    G  ++    +    A+ + D  +  + +   
Sbjct: 79  CFNHGTATFMILGAICTRRCPFCDV--AHGRPVAPDAEEPQKLAQTIADMALRYVVITSV 136

Query: 231 NVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAH-GDLDVLMP 289
           +    R    DG    F+D + ++      +++       R   D  +         +  
Sbjct: 137 D----RDDLRDGGAQHFADCITAIRAKSPEIKIETLVPDFRGRMDRALDILNATPPDVFN 192

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +    V     RI + +          ++++R +   P+I   S  +VG  GET+ +   
Sbjct: 193 HNLENV----PRIYRQVRPGADYNWSLKLLERFKEAHPEIPTKSGLMVGL-GETNAEIIE 247

Query: 350 TMDLVDKIGYAQAFSFKY 367
            M  + + G       +Y
Sbjct: 248 VMRDLRRHGVTMLTLGQY 265


>gi|169825222|ref|YP_001692833.1| putative Fe-S oxidoreductase [Finegoldia magna ATCC 29328]
 gi|167832027|dbj|BAG08943.1| putative Fe-S oxidoreductase [Finegoldia magna ATCC 29328]
          Length = 311

 Score = 54.6 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 43/259 (16%), Positives = 88/259 (33%), Gaps = 32/259 (12%)

Query: 188 KFCTFCVV--PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLG--QNVNAWRGKGLDGE 243
             C +C          E   S+ + +++ ++ I+N       +   QN +          
Sbjct: 41  GGCIYCHEEGGSFENKEKHLSIREQLEKDKQTIENKYNAHKFISYFQNYSNTYMPLELFR 100

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
           K     ++  +  I    R              ++K       +   + L +Q+ +++ L
Sbjct: 101 KYVNEAVVEDVVAISVSTRPDCIVIE----HLEILKQLQQEKHVDIIIELGLQTSNNKTL 156

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           K +NR+HT  ++ +    I+       I +  I+  P +  DD R T  L+  +   +  
Sbjct: 157 KIINRQHTVADFIRACLMIKKY--GFRICTHVILALPWDDMDDVRETAKLLSVLKVDECK 214

Query: 364 SFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK 423
                    T  +   ++                  + Q+   D  V ++ E L  K+  
Sbjct: 215 IHSLYIPKYTILAKWYKE-----------------GKVQLKSLDEYVNEVCEFL--KYLD 255

Query: 424 EK---GKLVGRSPWLQSVV 439
           +     +LVGR P   SV 
Sbjct: 256 KDILIQRLVGRMPEEDSVF 274


>gi|85859394|ref|YP_461596.1| Fe-S oxidoreductase [Syntrophus aciditrophicus SB]
 gi|85722485|gb|ABC77428.1| Fe-S oxidoreductase [Syntrophus aciditrophicus SB]
          Length = 452

 Score = 54.6 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 37/282 (13%), Positives = 81/282 (28%), Gaps = 27/282 (9%)

Query: 99  GDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVED 158
             + V++ G  A    E  L+     + V+  +   ++  ++E     K       S  D
Sbjct: 139 PGIPVILGGIYATLCPEHALQS--GADYVLTGEGELQIRFIIEDLLHRKIEYLPVLSELD 196

Query: 159 KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLI 218
                +     Y  +      +    GC   CT+C           RS + V +E     
Sbjct: 197 SLPYPAFDLLPYKEQLP----IMTSRGCPFRCTYCASHILNSSFRRRSPNHVAEEITFWN 252

Query: 219 DN-GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCL 277
            N G+   +       A+     D       +++         +  ++   +   +    
Sbjct: 253 RNFGIRHFSFYDD---AFLINSEDTAIPLMKEIIRR------DLSCQFHCPNGLHLRTI- 302

Query: 278 IKAHGDLDVLM-----PYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA-I 331
                 +  LM       L    ++           + +          ++        I
Sbjct: 303 ---TAKISRLMYRSGFRTLRFGFETSDFERQLRTGGKVSNEHLHSAFSYLKEAGYAPQDI 359

Query: 332 SSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
               + G P +   +   ++  V  +G A+    ++SP  GT
Sbjct: 360 GLYLLCGLPEQDAREVEESIRFVLSLG-ARPILAEFSPIPGT 400


>gi|89093167|ref|ZP_01166117.1| coproporphyrinogen III oxidase [Oceanospirillum sp. MED92]
 gi|89082463|gb|EAR61685.1| coproporphyrinogen III oxidase [Oceanospirillum sp. MED92]
          Length = 462

 Score = 54.6 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 33/193 (17%), Positives = 72/193 (37%), Gaps = 12/193 (6%)

Query: 186 CDKFCTFCVV--PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
           C+  C +C      TR  + ++     V    + +         + Q ++   G      
Sbjct: 64  CEHVCYYCACNKVITRNRKKAQPYLDTVYREMEQLSKWYSNNRPVTQ-LHWGGGTPTFIS 122

Query: 244 KCTFSDLLYSLSE----IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
                +L+  + +    +            PR+ S   IK   D+      + L +Q   
Sbjct: 123 HEQMIELMDQMRKHFNLLDDDSGDYSIEIDPREASLETIKVLRDIG--FNRISLGLQDID 180

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDI-AISSDFIVGFPGETDDDFRATMDLVDKIG 358
            ++ +++NR  +  +   I++  R +     +++ D I G P +T + F AT+D V ++ 
Sbjct: 181 PKVQEAVNRVQSVEQTAAILEEARRL--GFRSLNLDLIYGLPYQTLEGFNATLDTVIEMN 238

Query: 359 YAQAFSFKYSPRL 371
             +   F Y+   
Sbjct: 239 PDRLSVFNYAHLP 251


>gi|253681841|ref|ZP_04862638.1| biotin synthase [Clostridium botulinum D str. 1873]
 gi|253561553|gb|EES91005.1| biotin synthase [Clostridium botulinum D str. 1873]
          Length = 348

 Score = 54.6 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 29/197 (14%), Positives = 72/197 (36%), Gaps = 16/197 (8%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIE-ISR-SLSQVVDEARKLIDNGVCEITLLGQNVNAWRG 237
           +     C   CT+C +          R SL Q++D   +    G     L G   N +  
Sbjct: 56  IEFTNYCKNTCTYCGIRAFNKNVDRYRLSLDQIMDSCSEGYKLGYRTFVLQGGEDNYFTD 115

Query: 238 KGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQS 297
                       ++  +++IK        T    + S    K +   +  +    L  ++
Sbjct: 116 D----------KIVEIVTKIKSNFPECAVTLSIGEKSYHSYKKY--YNAGVDRYLLRHET 163

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
            S  + + ++   +    R+ +  ++ +     + + F++G PG++++D+   +  + ++
Sbjct: 164 ASKELYEKLHPGMSFENRRKCLRDLKEI--GYQVGAGFMIGIPGQSNEDYVEDLLFLKEL 221

Query: 358 GYAQAFSFKYSPRLGTP 374
                    + P+  TP
Sbjct: 222 EPHMVGIGPFIPQSHTP 238


>gi|148240843|ref|YP_001226230.1| Fe-S oxidoreductase [Synechococcus sp. WH 7803]
 gi|147849382|emb|CAK24933.1| Fe-S oxidoreductase [Synechococcus sp. WH 7803]
          Length = 521

 Score = 54.6 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 50/235 (21%), Positives = 91/235 (38%), Gaps = 26/235 (11%)

Query: 174 RGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVN 233
                 + +   C + C FC+  Y      + SL   +  A +        + LLG +V 
Sbjct: 187 WPDIHMVEVVRSCPELCRFCLASYLTLPFRTPSLDDGLIPAVERGLKATRRLGLLGASVT 246

Query: 234 AWRGKGLDGEKCTFSDLLYSL-SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLH 292
                        F+DLL  L S+    VR+  ++     ++  L  +          L 
Sbjct: 247 QH---------PQFTDLLTWLGSDRFDDVRVSVSSVRAATVTPALAASLAS--RGSKSLT 295

Query: 293 LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD--IAISSDFIVGFPGETDDDFRAT 350
           + ++SGS+R+ + +N++ ++    +I    R  +     A+    +VG P E ++D  AT
Sbjct: 296 IAIESGSERMRRVVNKKLSSE---EINAAARHAKQGGLSALKLYGMVGLPSEEEEDVEAT 352

Query: 351 MDLVDKIGYAQA------FSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLR 399
            DL+ ++  A            + P+  TP         E  K  RL  L K+L+
Sbjct: 353 ADLLLQLKKATPGLRFTLGVSTFVPKAHTP-FQWQGVRPEADK--RLKRLGKRLK 404


>gi|94967902|ref|YP_589950.1| radical SAM family Fe-S protein [Candidatus Koribacter versatilis
           Ellin345]
 gi|94549952|gb|ABF39876.1| Fe-S protein, radical SAM family [Candidatus Koribacter versatilis
           Ellin345]
          Length = 501

 Score = 54.6 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 55/386 (14%), Positives = 110/386 (28%), Gaps = 63/386 (16%)

Query: 43  RMEDMFFSQGYE-------RVNS------MDDADLIVLNTCHIREKAAEKVYSFLGRIRN 89
            +       GYE                  +  D I L    +      +       I+ 
Sbjct: 25  AVATPLLRAGYEVCLIDSTITPDFKKRVLAEVKDAICLGVSLVTGPMIRETIEIARAIKE 84

Query: 90  LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF---- 145
                     +  +V+ G        + L  +  V++VV  Q      +++         
Sbjct: 85  W-------NPEFPIVLGGWHPSLLPTQTL-EAEYVDIVVRGQGEESFLDVVRHLESRSAM 136

Query: 146 -----------------GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
                             +R +     +  K   L+  D          A  T    C  
Sbjct: 137 DLVAGIGFKRDGKTVFTAERPLRPIADLPPKAYHLADFDAYERVCGRRWAMYTSSLACPF 196

Query: 189 FCTFCVVPYTRGIEISRSLSQ--VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT 246
            C +C      G + +   ++  V +         +  + ++  N        LD  +  
Sbjct: 197 NCAYCTNAGVYGRKWNALPAEQFVEETVDLTRRYNLEMLWVVDDNFLV----DLDRAREI 252

Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306
            + L+ +    K  ++            D  +     L  +        +SGS+++L +M
Sbjct: 253 GAGLVRAGGNFKWSIQATTNLVARLSTEDLKLLHRAGLQQICQ----GAESGSEKVLAAM 308

Query: 307 NRRHTAYEYRQIIDRI-RSVRPDIAISSDFIVGFPGETDDDFRATMDLV----DKIGYAQ 361
           N+      +  I +   R +   I  S + I  FPGE   + R T+  +     K   A+
Sbjct: 309 NK--DFQNFESIYESAKRCLEAGIRPSFNIIFAFPGEGPKERRETVHFILDMCTKYPGAE 366

Query: 362 AFSFKYSPRLGTP----GSNMLEQVD 383
            ++  ++P  G P           V 
Sbjct: 367 FWTNIFTPYPGAPVMQKAKEFGIDVP 392


>gi|119716130|ref|YP_923095.1| coproporphyrinogen III oxidase [Nocardioides sp. JS614]
 gi|119536791|gb|ABL81408.1| coproporphyrinogen III oxidase, anaerobic [Nocardioides sp. JS614]
          Length = 426

 Score = 54.6 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 35/208 (16%), Positives = 61/208 (29%), Gaps = 23/208 (11%)

Query: 186 CDKFCTFCVV---------PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR 236
           C   C +C           P       SR+       A   I        +LG       
Sbjct: 49  CTVRCGYCDFNTYTAEELGPAGGAPGASRA-----TYAEAAIAEVRRARQVLGDTDLPVN 103

Query: 237 GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDC-------LIKAHGDLDVLMP 289
                G   T       L  +   +   +  +   +++         L            
Sbjct: 104 TVFFGGGTPTL-LGPADLGAVLAAIGAEFGLADDVEVTTEANPDSVALWDLEELRAAGFT 162

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
            L   +QS  D +L+ ++R H       ++D  R    +  IS D I G PGE+  D+  
Sbjct: 163 RLSFGMQSAVDHVLRVLDRTHDPLRVPAVVDWARQAGFE-QISLDLIYGTPGESVADWDV 221

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
           +++     G     ++      GT  + 
Sbjct: 222 SVEAALACGPEHVSAYSLIVEEGTALAR 249


>gi|323457290|gb|EGB13156.1| hypothetical protein AURANDRAFT_13624 [Aureococcus anophagefferens]
          Length = 275

 Score = 54.6 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 34/209 (16%), Positives = 66/209 (31%), Gaps = 23/209 (11%)

Query: 180 LTIQEGCD-KFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK 238
           + +  GC    CT+C +         R +   +     +I +      +      +    
Sbjct: 17  VRVTRGCQWNRCTYCKM--------YRDVDFALRHVDDVIADIDAAAQIYDILTRSDFDD 68

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM----SDCLIKAHGDLDVL----MPY 290
             D +          L +I   +R R+ T               K+  +L  L    +  
Sbjct: 69  LGDAD--ALFATADDLVKIVKHLRERFPTIKRVTTYARSDSINEKSLEELKRLKFAGLDR 126

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPG-ETDDDF-R 348
           LH+ +++GS ++ K   +     +     ++  +       S   + G  G E   D   
Sbjct: 127 LHVGLETGSLKVTKLCRKGVLPEKQLAAGEKAMAA--GFEYSVYVMPGLGGRELSADHVA 184

Query: 349 ATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
            T  LV  +  +      Y P  GT G +
Sbjct: 185 ETAKLVTAVNPSFVRFRTYCPIPGTEGYD 213


>gi|317488268|ref|ZP_07946835.1| radical SAM superfamily protein [Eggerthella sp. 1_3_56FAA]
 gi|316912650|gb|EFV34192.1| radical SAM superfamily protein [Eggerthella sp. 1_3_56FAA]
          Length = 681

 Score = 54.6 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 38/236 (16%), Positives = 73/236 (30%), Gaps = 27/236 (11%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGK 238
           + I  GC + C FC           RS   VV+   + +   G  E++L   +       
Sbjct: 264 VEILRGCARGCRFCQAGMMYRPVRERSADNVVESVVQGLAETGYDEVSLTSLSSTDHS-- 321

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
               +  +    +    + KG VR+   +         + +           L    ++G
Sbjct: 322 ----QIASILTRINRACDGKG-VRISVPSQRLDSFGVDMAELVAGQKK--GGLTFAPEAG 374

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDF-------RATM 351
           + R+   +N+  T  +    +D              F++G P ETDDD        +   
Sbjct: 375 TQRLRDVINKNVTEDDLFGALDAAFKAGWRRC-KLYFMIGLPTETDDDIKGIASLAQRAY 433

Query: 352 DLVDKIGYA--------QAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLR 399
           D +                    + P+  TP      Q+       R+  L+  ++
Sbjct: 434 DRMKAATPPEQRGSLRMSVSCALFVPKAQTP-FQWDGQIPPEEALRRVQLLRNSVK 488


>gi|253581885|ref|ZP_04859109.1| iron-sulfur dehydrogenase [Fusobacterium varium ATCC 27725]
 gi|251836234|gb|EES64771.1| iron-sulfur dehydrogenase [Fusobacterium varium ATCC 27725]
          Length = 472

 Score = 54.6 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 46/271 (16%), Positives = 90/271 (33%), Gaps = 35/271 (12%)

Query: 186 CDKFCTFCVVPYTRGIEIS----RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD 241
           C   C +C        EIS    R     V+   K I+     +   G  + +    G  
Sbjct: 153 CPTKCKYC---SFASYEISGGVGRYYKGFVETLLKEIEMAGKFLKDEGYKIESIYIGGGT 209

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY----LHLPVQS 297
               T  DL   L +I   + + Y      +           L+++  Y    + L  Q+
Sbjct: 210 PSTLTEDDLEKVLKKINENIDMSYLKEFTFEAGREDSLTEKKLELVKKYGADRISLNPQT 269

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
            ++  LK +NR      + +     + +  +  I+ D I+G P E  +D   T++ ++K 
Sbjct: 270 FNENTLKKVNRNFNRENFDRYFRIAKEM--NFIINMDLIIGLPDENTEDVLYTLNELEKY 327

Query: 358 GYAQAFSFKYSPRLGTPGSNM------LEQVDENVKAERLLCLQK-KLREQQVSFNDACV 410
                             S +       +++D  +  +R+  L + K  +    +    +
Sbjct: 328 DIENLTIHS---LAFKRASKLFKEDKNRKELDREIIEKRIKELIEKKQMKPYYMYRQKNI 384

Query: 411 GQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
                        E G+ VG +   +  V N
Sbjct: 385 ------------MEWGENVGYAKEGKESVFN 403


>gi|254525932|ref|ZP_05137984.1| Fe-S oxidoreductase [Prochlorococcus marinus str. MIT 9202]
 gi|221537356|gb|EEE39809.1| Fe-S oxidoreductase [Prochlorococcus marinus str. MIT 9202]
          Length = 540

 Score = 54.6 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 30/182 (16%), Positives = 60/182 (32%), Gaps = 12/182 (6%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISR-SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK 238
           +  + GC   C FCV     G ++    +++V+ E ++L D GV             +  
Sbjct: 256 VQTKRGCPHNCCFCVYTVVEGKQVRINPVNEVIKEMKQLYDLGVRGFWFTDAQFIPAKKH 315

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
             D +      LL ++ +               ++   L +   D    M Y  + + SG
Sbjct: 316 IEDAKT-----LLRAIKDQGWDDINWAAYIRADNIDAELAQLMVDTG--MSYFEIGITSG 368

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGF--PGETDDDFRATMDLVDK 356
           S  +++ M   +           +  V+            F    ET +  R T+    +
Sbjct: 369 SQELVRKMRLAYDLETVLNNCKML--VQSGFKNHVSVNYSFNVFDETPNTIRQTIAYHRE 426

Query: 357 IG 358
           + 
Sbjct: 427 LE 428


>gi|167034824|ref|YP_001670055.1| coproporphyrinogen III oxidase [Pseudomonas putida GB-1]
 gi|166861312|gb|ABY99719.1| oxygen-independent coproporphyrinogen III oxidase [Pseudomonas
           putida GB-1]
          Length = 460

 Score = 54.6 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 41/269 (15%), Positives = 90/269 (33%), Gaps = 21/269 (7%)

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR------SL 207
           +S    F+ L  +       R ++ ++ +   C   C +C        + +R       L
Sbjct: 32  HSEVGSFDLLHALRESRRAVRPLSLYVHVPF-CANICYYCACNKVITKDRARAAPYLQRL 90

Query: 208 SQVVDEARKLI--DNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            Q +      +     V ++   G          L     T     + L +  G   +  
Sbjct: 91  EQEIQLIACHLGPKQRVEQLHFGGGTPTFLSHVELRQLMATLRQHFHLLDDDSGDYGIEI 150

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
                   +  L++  G        + L VQ     + +++NR  +  + R +I+  R++
Sbjct: 151 DPREADWSTMGLLRELG-----FNRVSLGVQDLDPAVQRAVNRLQSLEQTRTLIEAARTL 205

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY--SPRLGTPGSNML-EQV 382
           +   +++ D I G P +T + F  T++ V ++   +   F Y   P    P   +    +
Sbjct: 206 QFR-SVNLDLIYGLPKQTPEGFARTVEEVIRLQPDRLSVFNYAHLPERFMPQRRIDNNDL 264

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVG 411
                   L  L   + +   +     +G
Sbjct: 265 PSPAAK--LEMLHATIDQLTAAGY-RYIG 290


>gi|78211864|ref|YP_380643.1| Elongator protein 3/MiaB/NifB [Synechococcus sp. CC9605]
 gi|78196323|gb|ABB34088.1| Elongator protein 3/MiaB/NifB [Synechococcus sp. CC9605]
          Length = 887

 Score = 54.6 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 38/238 (15%), Positives = 75/238 (31%), Gaps = 26/238 (10%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGK 238
           + I+ GC + C FC                V++     +   G  + +LL          
Sbjct: 279 VEIRRGCTRGCRFCQPGMLTRPARDVEPEAVIEAVETGMKQTGYSDFSLLS-----LSCS 333

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
                     +L   L+     V L+  +       + +    G        L    ++G
Sbjct: 334 DYLALPAVGVELRNRLA--DQNVTLQLPSQRVDRFDEDIAHILGGTRKA--GLTFAPEAG 389

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPD--IAISSDFIVGFPGETDDD---FRATMDL 353
           + R+   +N+  T      ++  IR+   +    +   F++G PGETD D      T  +
Sbjct: 390 TQRLRDIVNKGLTDD---DLLHGIRTAMQNGYRKVKLYFMIGLPGETDADVLGIAETCVM 446

Query: 354 VDKIGYA------QAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSF 405
           + +                ++P+  TP       V       R   L++  R  + + 
Sbjct: 447 LQQRCRDLGRLNLNITISNFTPKPHTPFQ--WHSVSTAEFERRQALLKEAFRRLRGAK 502


>gi|295136119|ref|YP_003586795.1| oxygen-independent coproporphyrinogen III oxidase [Zunongwangia
           profunda SM-A87]
 gi|294984134|gb|ADF54599.1| oxygen-independent coproporphyrinogen III oxidase [Zunongwangia
           profunda SM-A87]
          Length = 375

 Score = 54.6 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 45/241 (18%), Positives = 88/241 (36%), Gaps = 37/241 (15%)

Query: 186 CDKFCTFCVVPYT-----RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL 240
           C + C +C   ++     +   +S   +++V    +L +  +  I               
Sbjct: 11  CKQACHYCDFHFSTSLKKKSELVSALQNELVLRKNELPNEPIKTIYF------------- 57

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTTSH---------PRDMSDCLIKAHGDLDVLMPYL 291
            G        L  L+ I   +   +T +          P D+S+  I    +  +    L
Sbjct: 58  -GGGTPSLLNLEELTAIFKTIYTEFTIAENPEITLEANPDDLSEEKINELANSKI--NRL 114

Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351
            + VQS  +  LK MNR H A E    I   RS   +I++  D I G PG +++ ++  +
Sbjct: 115 SIGVQSFFEEDLKLMNRAHNAEEALNSIKLARSKFDNISV--DLIYGIPGMSNERWQKNI 172

Query: 352 DLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ-----VDENVKAERLLCLQKKLREQQVSFN 406
            ++  +      S+  +    T     +E+     VD+   A+    L+  L+       
Sbjct: 173 QILLDLDIPHISSYSLTVEPNTALQKFIEKGKIKPVDDAAAAQHFETLRTVLKNAGFEHY 232

Query: 407 D 407
           +
Sbjct: 233 E 233


>gi|306755848|sp|D1Z4I6|LIPA_SORMK RecName: Full=Lipoyl synthase, mitochondrial; AltName: Full=Lipoate
           synthase; Short=LS; Short=Lip-syn; AltName: Full=Lipoic
           acid synthase; Flags: Precursor
 gi|289621999|emb|CBI51177.1| unnamed protein product [Sordaria macrospora]
          Length = 445

 Score = 54.6 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 37/212 (17%), Positives = 80/212 (37%), Gaps = 14/212 (6%)

Query: 162 RLSIVDGGYNRKRGVTAFLTIQ---EGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLI 218
           R   +   +       A  TI    + C + C FC V  +R         +  + A  L 
Sbjct: 161 RCPNIGECWGGSNKAAATATIMLMGDTCTRGCRFCSVKTSRKPP-PLDPHEPENTAEALA 219

Query: 219 DNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLI 278
             G+  + L   +    R    DG    F++ +  + + K  + +   T         ++
Sbjct: 220 RWGLGYVVLTSVD----RDDLADGGARHFAETIRRIKQKKPTLLVEALTGDFMG-DLDMV 274

Query: 279 KAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR--PDIAISSDFI 336
           K   D  + + Y H  V++  +      +RR T  +  ++++ +++VR    I   +  +
Sbjct: 275 KIVADSGLDV-YAH-NVETVENLTPYVRDRRATFRQSLKVLEHVKNVRGKEGIITKTSIM 332

Query: 337 VGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
           +G  GET+++    +  + K+        +Y 
Sbjct: 333 LGL-GETEEELWDALRELRKVDVDVVTFGQYM 363


>gi|161504193|ref|YP_001571305.1| lipoyl synthase [Salmonella enterica subsp. arizonae serovar
           62:z4,z23:-- str. RSK2980]
 gi|189046611|sp|A9MKE4|LIPA_SALAR RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|160865540|gb|ABX22163.1| hypothetical protein SARI_02300 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 321

 Score = 54.6 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 30/183 (16%), Positives = 65/183 (35%), Gaps = 12/183 (6%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V    G  ++    +    A+ + D  +  + +   +    R    DG   
Sbjct: 94  CTRRCPFCDV--AHGRPVAPDAEEPQKLAQTIADMALRYVVITSVD----RDDLRDGGAQ 147

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAH-GDLDVLMPYLHLPVQSGSDRILK 304
            F+D + ++      +++       R   D  ++        +  +    V     RI +
Sbjct: 148 HFADCITAIRAKSPEIKIETLVPDFRGRMDRALEILNATPPDVFNHNLENV----PRIYR 203

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
            +          ++++R +   P+I   S  +VG  GET+ +    M  + + G      
Sbjct: 204 QVRPGADYNWSLKLLERFKEAHPEIPTKSGLMVGL-GETNAEIIEVMRDLRRHGVTMLTL 262

Query: 365 FKY 367
            +Y
Sbjct: 263 GQY 265


>gi|159897422|ref|YP_001543669.1| lipoyl synthase [Herpetosiphon aurantiacus ATCC 23779]
 gi|159890461|gb|ABX03541.1| lipoic acid synthetase [Herpetosiphon aurantiacus ATCC 23779]
          Length = 298

 Score = 54.6 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 34/214 (15%), Positives = 76/214 (35%), Gaps = 14/214 (6%)

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           ++V ++    +I +   +R      FL + + C + C +C +   +G        +    
Sbjct: 46  HTVCEEAHCPNIGECWNHRT---ATFLLLGDTCTRGCRYCAI--GKGKPKPIDEQEPQRI 100

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
           A  +    +  + L   N    R    DG    F++ +  + +     ++          
Sbjct: 101 AAAVAHLKLKHVVLTSVN----RDDQADGGAHIFAESIDLIRQQLPECKIEVLIPDFDGN 156

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
            + L         ++ +    V     R+ +    R   Y+  +++   R ++P I   S
Sbjct: 157 WEALRIVMDARPDVLNHNIETV----PRLFRKFRPRANFYQSLELLRLARDLQPSIVTKS 212

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
             +VG  GETD++    MD + +         +Y
Sbjct: 213 GLMVG-AGETDEEVLTVMDALRRSDVDVMTIGQY 245


>gi|89902693|ref|YP_525164.1| lipoyl synthase [Rhodoferax ferrireducens T118]
 gi|89347430|gb|ABD71633.1| lipoic acid synthetase [Rhodoferax ferrireducens T118]
          Length = 338

 Score = 54.6 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 75/208 (36%), Gaps = 12/208 (5%)

Query: 161 ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN 220
           E  S  + G    +G   F+ + + C + C FC V + R   +   +++  + A  +   
Sbjct: 85  EEASCPNIGECFGKGTATFMIMGDKCTRRCPFCDVGHGRPDPL--DVNEPANLATTIAQL 142

Query: 221 GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKA 280
            +  + +   +    R    DG    F   + ++ +     ++       R   D  ++ 
Sbjct: 143 KLKYVVITSVD----RDDLRDGGAGHFVACIQAIRDKSPQTQIEVLVPDFRGRDDRALEI 198

Query: 281 H-GDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGF 339
                  +M +    +     R+ K             ++ + +++ PD+   S  +VG 
Sbjct: 199 LKAAPPDVMNHNLETI----PRLYKEARPGSDYQFSLNLLKKFKALFPDVPTKSGLMVGL 254

Query: 340 PGETDDDFRATMDLVDKIGYAQAFSFKY 367
            GETD++  A M  +   G       +Y
Sbjct: 255 -GETDEEILAVMRDMRAHGINMLTLGQY 281


>gi|237713805|ref|ZP_04544286.1| biotin synthase [Bacteroides sp. D1]
 gi|262409288|ref|ZP_06085831.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294644701|ref|ZP_06722450.1| radical SAM domain protein [Bacteroides ovatus SD CC 2a]
 gi|294805938|ref|ZP_06764805.1| radical SAM domain protein [Bacteroides xylanisolvens SD CC 1b]
 gi|229446252|gb|EEO52043.1| biotin synthase [Bacteroides sp. D1]
 gi|262352740|gb|EEZ01837.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292639964|gb|EFF58233.1| radical SAM domain protein [Bacteroides ovatus SD CC 2a]
 gi|294446820|gb|EFG15420.1| radical SAM domain protein [Bacteroides xylanisolvens SD CC 1b]
          Length = 358

 Score = 54.6 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 30/216 (13%), Positives = 63/216 (29%), Gaps = 21/216 (9%)

Query: 169 GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI-EISR-SLSQVVDEARKLIDNGVCEIT 226
            +  K  +   + +   C   C +C +       E  R +L  ++D  R+    G     
Sbjct: 45  HFGNKIYIRGLIEVSNCCRNNCYYCGIRKGNPNIERYRLNLESILDCCRQGYKLGFRTFV 104

Query: 227 LLGQNVNAWRGKGLDGEKCTFSDLLYSLS---EIKGLVRLRYTTSHPRDMSDCLIKAHGD 283
           L G    A     ++             +    +    R  Y        +  L++    
Sbjct: 105 LQGGEDPALTDDRIEMTVARIRQNYPDCAITLSLGEKSRDAYERFFRAGANRYLLRHETH 164

Query: 284 LDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGET 343
            +     LH    SG               +  Q +  ++ +       +  +VG PG+T
Sbjct: 165 NESHYRQLHPAEMSG--------------KQRLQCLADLKDI--GYQTGTGIMVGSPGQT 208

Query: 344 DDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            +     +  ++K+         + P   TP +   
Sbjct: 209 VEHIIEDILFIEKLQPEMIGIGPFLPHHDTPFAQYP 244


>gi|215489200|ref|YP_002331631.1| coproporphyrinogen III oxidase [Escherichia coli O127:H6 str.
           E2348/69]
 gi|312969389|ref|ZP_07783591.1| oxygen-independent coproporphyrinogen III oxidase [Escherichia coli
           2362-75]
 gi|215267272|emb|CAS11721.1| coproporphyrinogen III oxidase, SAM and NAD(P)H dependent,
           oxygen-independent [Escherichia coli O127:H6 str.
           E2348/69]
 gi|312285936|gb|EFR13854.1| oxygen-independent coproporphyrinogen III oxidase [Escherichia coli
           2362-75]
          Length = 457

 Score = 54.6 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 43/269 (15%), Positives = 91/269 (33%), Gaps = 30/269 (11%)

Query: 157 EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS-------LSQ 209
           ED  E+  +       +R ++ ++ I   C K C FC        +  ++         +
Sbjct: 34  EDFGEQAFLQAVARYPERPLSLYVHIPF-CHKLCYFCGCNKIVTRQQHKADQYLDALEQE 92

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE-----IKGLVRLR 264
           +V  A       V ++   G       G      K   S L+  L E         + + 
Sbjct: 93  IVHRAPLFAGRHVSQLHWGG-------GTPTYLNKAQISRLMKLLRENFQFNADAEISIE 145

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
                PR++   ++            L + VQ  +  + + +NR         +++  R 
Sbjct: 146 V---DPREIELDVLDHLRAEG--FNRLSMGVQDFNKEVQRLVNREQDEEFIFALLNHARE 200

Query: 325 VRPDIAISS-DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQV 382
           +      ++ D I G P +T + F  T+  V ++   +   F Y+       +   ++  
Sbjct: 201 I--GFTSTNIDLIYGLPKQTPESFAFTLKRVAELNPDRLSVFNYAHLPTIFAAQRKIKDA 258

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVG 411
           +     ++L  LQ+ +     S     +G
Sbjct: 259 ELPSPQQKLDILQETIAFLTQSGYQ-FIG 286


>gi|153936410|ref|YP_001388691.1| coproporphyrinogen III oxidase [Clostridium botulinum A str. Hall]
 gi|152932324|gb|ABS37823.1| oxygen-independent coproporphyrinogen III oxidase [Clostridium
           botulinum A str. Hall]
          Length = 380

 Score = 54.6 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 33/199 (16%), Positives = 74/199 (37%), Gaps = 14/199 (7%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C++C        E    +  V   ++++++N   +I      +    G        
Sbjct: 19  CMQKCSYCDFTSYSKKE-DLMMEYVKALSKEIVNNTKNKIIKT---IFIGGGTPTYLSLE 74

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSH----PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
             + L  +L  I     + +T         +    L+K+ G     +  L + +QS  + 
Sbjct: 75  ALNILKNTLKTIDKKENIEFTVEGNPGAFTEKKLKLLKSMG-----VNRLSIGLQSSKNS 129

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
           +LK++ R H+  ++       R    +  I+ D +   P ++ DD++ T+  V  +    
Sbjct: 130 LLKTLGRIHSFEDFAHSFKMARKEGFN-NINVDLMFALPNQSLDDWKETLLTVVGLSPEH 188

Query: 362 AFSFKYSPRLGTPGSNMLE 380
              +      GT   N+ +
Sbjct: 189 LSCYSLIIEEGTNFYNLYK 207


>gi|317503092|ref|ZP_07961167.1| radical SAM domain protein [Prevotella salivae DSM 15606]
 gi|315665791|gb|EFV05383.1| radical SAM domain protein [Prevotella salivae DSM 15606]
          Length = 684

 Score = 54.6 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 56/380 (14%), Positives = 110/380 (28%), Gaps = 84/380 (22%)

Query: 108 CVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVD 167
           C+     E    R      +           LL++      VV+  Y      E   I D
Sbjct: 232 CLQNKRAEAENYRH-----IEEESNKIHAQRLLQKVGDVYAVVNPPYPTMTTKELDEIFD 286

Query: 168 GGYNRKRGVT-------AFLTI------QEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDE 213
             Y R            A+  I       +GC   C FC +   +G  +  RS   +V E
Sbjct: 287 LPYTRLPHPKYKGKKLLAYEMIKFSINMHQGCFGGCAFCTISAHQGKFVACRSKESIVKE 346

Query: 214 ARKLI----------DNGVCEITLLGQN---------------VNAWRGKGLDGEKCTFS 248
           A+K+I          D G     + G +               +N      LD +     
Sbjct: 347 AKKVISMPDFKGYISDLGGPSANMYGMHGRNLTACEHCKRPSCINPQVCPNLDTDHTKLL 406

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLD---------------VLMPYLHL 293
           D+ +++ ++ GL +    +    D+   L+    D                  +   L +
Sbjct: 407 DIYHTVDKLPGLKKSFIGSGVRYDL---LLHKSKDEKANASAQQYTRELIKNHVSGRLKI 463

Query: 294 PVQSGSDRILKSMNRR-----HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFR 348
             +     +L+ M +      +   +    +++   ++  I     FI   PG  ++D  
Sbjct: 464 APEHTQSDVLRLMRKPSFTQFYDFKKVFDQVNKEAGLKQQIIPY--FISSHPGCHEEDMA 521

Query: 349 ATMDLVDKIGYAQAFSFKYSPRLGTPGSN----------MLEQVDENVKAERLLCLQ--- 395
               +   + +       ++P   T  +           +          E+L   Q   
Sbjct: 522 ELAVITKDLDFHLEQVQDFTPTPMTISTETWYTGYDPYTLEPVYSAKTPKEKLAQRQFFF 581

Query: 396 --KKLREQQVSFNDACVGQI 413
             K    + +      +G+ 
Sbjct: 582 WYKPEERKNIERELKRIGRE 601


>gi|213967526|ref|ZP_03395674.1| oxygen-independent coproporphyrinogen III oxidase [Pseudomonas
           syringae pv. tomato T1]
 gi|301386489|ref|ZP_07234907.1| coproporphyrinogen III oxidase [Pseudomonas syringae pv. tomato
           Max13]
 gi|302062811|ref|ZP_07254352.1| coproporphyrinogen III oxidase [Pseudomonas syringae pv. tomato
           K40]
 gi|302131310|ref|ZP_07257300.1| coproporphyrinogen III oxidase [Pseudomonas syringae pv. tomato
           NCPPB 1108]
 gi|213927827|gb|EEB61374.1| oxygen-independent coproporphyrinogen III oxidase [Pseudomonas
           syringae pv. tomato T1]
          Length = 460

 Score = 54.6 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 78/220 (35%), Gaps = 15/220 (6%)

Query: 160 FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC----VVPYTRGIEI---SRSLSQVVD 212
           FE L  +       R ++ ++ I   C   C +C    V+   RG       R   ++  
Sbjct: 38  FELLHALRESRKALRPLSLYVHIPF-CANICYYCACNKVITKDRGRAQVYLQRLEHEIRM 96

Query: 213 EARKLI-DNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPR 271
            A  L     V ++ L G          L             L +  G   +        
Sbjct: 97  LACHLAPSQVVEQLHLGGGTPTFLSHDELRRLMARLRAHFTLLEDDSGDYGIEIDPREAD 156

Query: 272 DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAI 331
             S  L++  G        + L VQ     + +++NR  +  E R I++  R+++   ++
Sbjct: 157 WASMGLLRELG-----FNRVSLGVQDLDPTVQRAINRMQSLEETRAIVEAARTLQFR-SV 210

Query: 332 SSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
           + D I G P +T   F  T+D + ++   +   F Y+   
Sbjct: 211 NIDLIYGLPRQTPQGFSRTVDEIIELQPDRLSVFNYAHLP 250


>gi|212691062|ref|ZP_03299190.1| hypothetical protein BACDOR_00552 [Bacteroides dorei DSM 17855]
 gi|212666294|gb|EEB26866.1| hypothetical protein BACDOR_00552 [Bacteroides dorei DSM 17855]
          Length = 376

 Score = 54.6 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 38/203 (18%), Positives = 66/203 (32%), Gaps = 17/203 (8%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWR---GKGLD 241
           C K C +C    T          Q     R L       +  L G+ +       G    
Sbjct: 11  CKKRCIYCDFFSTTRK------EQKTAYIRALCHELTNRKDYLKGEPIETIYLGGGTPSQ 64

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPR--DMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
             K  F  +   + ++  +      T      D++   I            + + +Q+  
Sbjct: 65  LAKEDFEAIFSHIYKVYKVTPNAEITLEANPDDLTSEYISMLRTFP--FNRISMGIQTFQ 122

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDI-AISSDFIVGFPGETDDDFRATMDLVDKIG 358
           +  LK + RRHTA +  +     R+       IS D + G PGET   ++  +     + 
Sbjct: 123 ETTLKQLQRRHTADQAIRAFQGCRTA--GFQNISIDLMYGLPGETLTSWKKDLKQALSLH 180

Query: 359 YAQAFSFKYSPRLGTPGSNMLEQ 381
                ++      GTP   + EQ
Sbjct: 181 PEHISAYHLIYEEGTPLWKLREQ 203


>gi|124024068|ref|YP_001018375.1| Fe-S oxidoreductase [Prochlorococcus marinus str. MIT 9303]
 gi|123964354|gb|ABM79110.1| Fe-S oxidoreductase [Prochlorococcus marinus str. MIT 9303]
          Length = 538

 Score = 54.6 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 35/205 (17%), Positives = 68/205 (33%), Gaps = 14/205 (6%)

Query: 158 DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR-SLSQVVDEARK 216
           D    +      Y         +  + GC   C +CV     G ++    + +VV E R+
Sbjct: 232 DYISSIWPQLNWYLEGGDFYVGVQTKRGCPHNCCYCVYTVVEGKQVRLNPVKEVVAEMRQ 291

Query: 217 LIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY-TTSHPRDMSD 275
           L D GV             R    D +     +LL ++ + +GL  +R+       ++  
Sbjct: 292 LYDRGVRGFWFTDAQFIPARRYIEDAK-----NLLTAI-KAEGLNGIRWAAYIRADNLDA 345

Query: 276 CLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDF 335
            L +        M Y  + + SGS  +++ M   +      +    +  VR         
Sbjct: 346 ELAELMVATG--MSYFEIGITSGSQELVRKMRMGYNLRTVLENCRLL--VRAGFRQHVSV 401

Query: 336 IVGFPG--ETDDDFRATMDLVDKIG 358
              F    E  +  R ++    ++ 
Sbjct: 402 NYSFNVIDERPETIRQSIAYHRELE 426


>gi|330990842|ref|ZP_08314797.1| hypothetical protein SXCC_00751 [Gluconacetobacter sp. SXCC-1]
 gi|329761988|gb|EGG78477.1| hypothetical protein SXCC_00751 [Gluconacetobacter sp. SXCC-1]
          Length = 533

 Score = 54.6 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 35/201 (17%), Positives = 68/201 (33%), Gaps = 19/201 (9%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVC-EITLLGQNVNAWRG 237
           +    GC   C FC +    G    +++ +QV+ E   L   G    +  +  N+     
Sbjct: 176 IQFSRGCPFSCEFCDIIELYGRVPRTKTNAQVMAELDALYALGYRGHVDFVDDNLI---- 231

Query: 238 KGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM----SDCLIKAHGDLDVLMPYLHL 293
               G K      L  L   +      +  S    +       L+++  D +     + +
Sbjct: 232 ----GNKKALKKFLPDLKRWQNEKNFPFEFSTEASINLADDADLLRSLADTNFFA--IFV 285

Query: 294 PVQSGSDRILKSMNRR-HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352
            ++S     L  M ++ +T    +Q I+ I      I +++ FIVGF  E     +  +D
Sbjct: 286 GIESPDTDSLVLMQKKQNTRRSLQQSIETIHKA--GIFVNAGFIVGFDSEKGSVAQGMID 343

Query: 353 LVDKIGYAQAFSFKYSPRLGT 373
            ++                 T
Sbjct: 344 CIEDTSIPVCMVGLLYALPTT 364


>gi|238751335|ref|ZP_04612828.1| hypothetical protein yrohd0001_15200 [Yersinia rohdei ATCC 43380]
 gi|238710393|gb|EEQ02618.1| hypothetical protein yrohd0001_15200 [Yersinia rohdei ATCC 43380]
          Length = 300

 Score = 54.6 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 42/106 (39%), Gaps = 11/106 (10%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +L L +Q+ +D+ LK +NR H    Y+Q   R R+    + +    IVG PGE  +    
Sbjct: 141 WLELGLQTANDKTLKRINRGHDFACYQQTARRARAR--GLKVCCHLIVGLPGEGMEQGME 198

Query: 350 TMDLVDKIGYAQAFSFKYSPRLG-TPGSNMLEQVDENVKAERLLCL 394
           T++ V   G             G T             +A RL  L
Sbjct: 199 TLEKVVATGVDGLKLHPLHIVEGSTMAKAW--------RAGRLAEL 236


>gi|154497024|ref|ZP_02035720.1| hypothetical protein BACCAP_01317 [Bacteroides capillosus ATCC
           29799]
 gi|150273423|gb|EDN00551.1| hypothetical protein BACCAP_01317 [Bacteroides capillosus ATCC
           29799]
          Length = 493

 Score = 54.6 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 36/195 (18%), Positives = 72/195 (36%), Gaps = 25/195 (12%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQ---NVNAWRGKGLDG 242
           C   C +C         +S  + + +      ++    E+   G     +  +      G
Sbjct: 179 CPTRCAYCS-------FVSADVGKALKLLPPYLEALFREVEAAGDLLKRLGLYVRTVYIG 231

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRD----------MSDCLIKAHGDLDVLMPYLH 292
                +     LS + G +R     S   +          ++   + A  +       + 
Sbjct: 232 GGTPTTLSAEQLSALMGHIRTHIDLSRCTEYTVEAGRPDTITAEKLAALKE--NGADRVS 289

Query: 293 LPVQSGSDRILKSMNRRHTAYEYRQIIDRIR-SVRPDIAISSDFIVGFPGETDDDFRATM 351
           +  QS SD++L++M R HTA +  +  + +R S  P + +  D I G P ++ + FR+T+
Sbjct: 290 VNPQSMSDKVLRAMGRSHTAADILRAYELVRNSGIPCVNM--DLIAGLPEDSREGFRSTL 347

Query: 352 DLVDKIGYAQAFSFK 366
           D V  +  A      
Sbjct: 348 DQVLSMDPANITVHT 362


>gi|295838915|ref|ZP_06825848.1| radical SAM domain-containing protein [Streptomyces sp. SPB74]
 gi|295827248|gb|EDY42403.2| radical SAM domain-containing protein [Streptomyces sp. SPB74]
          Length = 656

 Score = 54.6 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 72/418 (17%), Positives = 126/418 (30%), Gaps = 72/418 (17%)

Query: 52  GYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVV----VAG 107
           G+   N    AD I    C +     + V    G +R  K   +  G D +++      G
Sbjct: 164 GHAAFNPEPVADFI---DCAVIGDGEQAVLEMTGIVRAWKAEGMPGGRDEVLLRLARTGG 220

Query: 108 CVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVD 167
                  +        +   V  ++                V+D D     K   + + +
Sbjct: 221 IYVPRFYDVEYLPDGRIARTVPNRSGVPWR------VSKHTVMDLDEWPYPKQPLVPLAE 274

Query: 168 GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEIT 226
             + R       + I  GC + C FC           RS++ + D   K +   G  E+ 
Sbjct: 275 TVHERMS-----VEIFRGCTRGCRFCQAGMITRPVRERSITGIGDMVEKGLRATGFEEVG 329

Query: 227 LLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV 286
           LL     +       G+        Y   +I     L   ++     +  L         
Sbjct: 330 LLS---LSSADHSEIGDVAKGLADRYEEEKIG----LSLPSTRVDAFNVDLANELTRNGR 382

Query: 287 LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR-----IRSVRPDIAISSDFIVGFPG 341
               L    + GS+R+ K +N+  +  +  + +        R V+        F+ G P 
Sbjct: 383 -RSGLTFAPEGGSERMRKVINKMVSEEDLIRTVSTAYGNGWRQVK------LYFMCGLPT 435

Query: 342 ETDDDFRATMDLVDKI---------GYA---QAFSFKYSPRLGTPGSNMLEQVDENVKAE 389
           ETD+D     D+  ++                     + P+  TP      Q+       
Sbjct: 436 ETDEDVLQIADMATRVIAEGRAASGRSDIRATVSIGGFVPKPHTP-FQWAPQLSPEDTDA 494

Query: 390 RLLCLQKKLR---------------------EQQVSFNDACVGQIIEVLIEKHGKEKG 426
           RL  L+ K+R                     E  +S  D  VG +I  + E  G+  G
Sbjct: 495 RLAKLRDKIRGDKKYGRSIGFRYHDGKPGIVEGLLSRGDRRVGAVIRAVYEDGGRFDG 552


>gi|291557745|emb|CBL34862.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Eubacterium siraeum V10Sc8a]
          Length = 364

 Score = 54.6 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 38/208 (18%), Positives = 72/208 (34%), Gaps = 21/208 (10%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEIT-LLGQNVNAWRGKGLDGEK 244
           C   C +C          S +     D A +  D  +  +   L QN N  R   +    
Sbjct: 12  CLSKCPYC-------DFYSVAFDS--DTANRYKDAVIRNLRCYLSQNEN-LRFDTVYFGG 61

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLM-------PYLHLPVQS 297
            T   L   + +I  +  ++   +   +++        D + L          +   +QS
Sbjct: 62  GTPILLWREICDI--MDEIQPYIASGAEITVEANPCCTDENALCSLKTHNVNRISFGLQS 119

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
           G D  LK++ RRH +      +        D  IS D ++G P +T D    T++ +  +
Sbjct: 120 GIDNELKALGRRHNSKVGADAVKMAYKAGFD-NISGDIMLGIPLQTSDSLIETINYMTSL 178

Query: 358 GYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
             +   ++       TP S     + + 
Sbjct: 179 PLSHISAYMLKIEPDTPFSKRHLILPDE 206


>gi|304315672|ref|YP_003850817.1| radical SAM protein [Thermoanaerobacterium thermosaccharolyticum
           DSM 571]
 gi|302777174|gb|ADL67733.1| Radical SAM domain protein [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 448

 Score = 54.6 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 53/319 (16%), Positives = 95/319 (29%), Gaps = 39/319 (12%)

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
                  S  + G    + + G       +EIL   P ++ VV  +      EL  +   
Sbjct: 78  EALEFVKSIREAGYKGHISIGGIYPTFSYDEILSVCPQIDTVVVGEGEITFLELARKVLS 137

Query: 146 GKRVVDTD---------YSVEDKFERLSIVDGGYNRKRGVT---------AFLTIQEGCD 187
            +   +             + DK   +  +D     +R            A +    GC 
Sbjct: 138 DEDWKNISGIAYRDDGTLRLNDKRPLIDDLDSMPYPERDTLPIVILKSGFASMLTSRGCY 197

Query: 188 KFCTFCVV----PYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDG 242
             C+FC V             RS+  V+DE R L +   V  +          +GK  + 
Sbjct: 198 GRCSFCSVGPFFSQFGQKYRQRSVENVIDEIRILYEKYNVRNLFFNDAEFIGGKGKNYER 257

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
                 +++       G+           D+   L          +  + L V+SGS  +
Sbjct: 258 VYKLAEEIIKR-----GMDINFSIQCRVNDVDKELFSILKKAG--LKRVFLGVESGSQTV 310

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFP-------GETDDDFRATMDLVD 355
           L    +     +  + +  +  +  D+ IS  FI+  P        E        + L+ 
Sbjct: 311 LDRFKKDVKVEDNIKALKILNDL--DLYISMGFIMFDPHINFKELSENISFINNAVKLIG 368

Query: 356 KIGYAQAFSFKYSPRLGTP 374
           K         +  P  GT 
Sbjct: 369 KERLDYYPVSRLLPLAGTE 387


>gi|227820180|ref|YP_002824151.1| lipoyl synthase [Sinorhizobium fredii NGR234]
 gi|227339179|gb|ACP23398.1| lipoyl synthase [Sinorhizobium fredii NGR234]
          Length = 321

 Score = 54.6 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 29/194 (14%), Positives = 69/194 (35%), Gaps = 11/194 (5%)

Query: 174 RGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVN 233
           +    F+ + E C + C FC V    G   +  L +  + A+ +   G+  + +   +  
Sbjct: 75  KKHATFMIMGEICTRACAFCNV--ATGKPNALDLEEPENVAKAVKQMGLSHVVITSVD-- 130

Query: 234 AWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHL 293
             R    DG    F  +++++ E      +   T         L +       +  +   
Sbjct: 131 --RDDLEDGGAEHFEKVIWAIREASPTTTIEILTPDFLKKPGALERVVAAKPDVFNH--- 185

Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
            +++     L ++      +   +++ R++ + P +   S  +VG  GE  ++    MD 
Sbjct: 186 NLETVPGNYL-TVRPGARYFHSVRLLQRVKELDPTMFTKSGIMVGL-GEERNEVLQLMDD 243

Query: 354 VDKIGYAQAFSFKY 367
           +           +Y
Sbjct: 244 LRTADVDFLTIGQY 257


>gi|123966927|ref|YP_001012008.1| lipoyl synthase [Prochlorococcus marinus str. MIT 9515]
 gi|123201293|gb|ABM72901.1| lipoic acid synthetase [Prochlorococcus marinus str. MIT 9515]
          Length = 297

 Score = 54.6 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 33/220 (15%), Positives = 70/220 (31%), Gaps = 11/220 (5%)

Query: 153 DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVD 212
           D  +    +  S  + G     G   FL +  GC + C +C + + R        ++   
Sbjct: 34  DLKLNTVCQEASCPNIGECFASGTATFLIMGPGCTRACPYCDINFDRSK-RDLDPTEPDR 92

Query: 213 EARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
            A  +    +  + +   N    R    DG    F   +  +        +         
Sbjct: 93  LAEAVHRMKLKHVVITSVN----RDDLDDGGASQFYKCVSEVRIKSPQTTIELLIPDLCG 148

Query: 273 MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAIS 332
               L +       ++ +    V S    + + +  +       +++ R R   P++   
Sbjct: 149 NWGALEQVLDSKPNVLNHNIETVPS----LYRKVRPQGNYQRTLELLKRTREYFPNVYTK 204

Query: 333 SDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY-SPRL 371
           S F++G  GE DD+    +  + +         +Y SP  
Sbjct: 205 SGFMLGL-GEKDDEVLNLLMDLRRNDVDIVTIGQYLSPGP 243


>gi|125980194|ref|XP_001354122.1| GA18753 [Drosophila pseudoobscura pseudoobscura]
 gi|122000230|sp|Q2LYK1|LIAS_DROPS RecName: Full=Lipoyl synthase, mitochondrial; AltName: Full=Lipoate
           synthase; Short=LS; Short=Lip-syn; AltName: Full=Lipoic
           acid synthase; Flags: Precursor
 gi|54641110|gb|EAL29861.1| GA18753 [Drosophila pseudoobscura pseudoobscura]
          Length = 374

 Score = 54.6 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 27/185 (14%), Positives = 63/185 (34%), Gaps = 13/185 (7%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQV--VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
           C + C FC V   R       L +   V+ A+ +   G+  I L   +    R    DG 
Sbjct: 132 CTRGCRFCSVKTARIP---PPLDENEPVNTAKAIASWGLDYIVLTSVD----RDDLPDGG 184

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
               +  +  +      + +       R      ++   +  + +   ++         +
Sbjct: 185 SKHIAQTVREIKARNSNIFVECLVPDFRG-DLDCVETIANCGLDVYAHNIETVEKLTPYV 243

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           +     +   +  +++   +   P++   S  ++G  GETD++   TM  + + G     
Sbjct: 244 RDRRAHYR--QTLRVLTEAKRFNPNLITKSSIMLGL-GETDEEIERTMTDLREAGVECLT 300

Query: 364 SFKYS 368
             +Y 
Sbjct: 301 LGQYM 305


>gi|330444875|ref|ZP_08308530.1| oxygen-independent coproporphyrinogen III oxidase [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
 gi|328489185|dbj|GAA03027.1| oxygen-independent coproporphyrinogen III oxidase [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
          Length = 457

 Score = 54.6 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 45/237 (18%), Positives = 84/237 (35%), Gaps = 23/237 (9%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C K C +C           +   Q +D   + I       TLLG    +    G  G   
Sbjct: 62  CHKLCYYCGCNKIITRHQHK-ADQYLDALEQEIKQ---RATLLGDRQVSQLHWG--GGTP 115

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL-------MPYLHLPVQSG 298
           TF      +S +   +R  +      ++S  +     +LD+L          L + VQ  
Sbjct: 116 TF-LTAEQISRLMNSLRASFNFDDDAEISIEVDPREIELDILDHLRSEGFNRLSIGVQDF 174

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS-DFIVGFPGETDDDFRATMDLVDKI 357
           +  + K +NR         +++R R +      ++ D I G P +  + F  T++ V K+
Sbjct: 175 NKDVQKLVNREQDEQFIFAMVERAREL--GFRSTNLDLIYGLPLQNREVFAQTLEQVLKM 232

Query: 358 GYAQAFSFKYSPRLGTPGSNMLEQVDENV---KAERLLCLQKKLREQQVSFNDACVG 411
              +   F Y+       +    ++ E +     E+L  LQ  +     +     +G
Sbjct: 233 NPGRLSVFNYAHMPKLFAAQR--KISEELLPSAKEKLGILQDTIATLTGAGYQ-FIG 286


>gi|284030344|ref|YP_003380275.1| oxygen-independent coproporphyrinogen III oxidase [Kribbella
           flavida DSM 17836]
 gi|283809637|gb|ADB31476.1| oxygen-independent coproporphyrinogen III oxidase [Kribbella
           flavida DSM 17836]
          Length = 401

 Score = 54.6 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 34/203 (16%), Positives = 63/203 (31%), Gaps = 18/203 (8%)

Query: 186 CDKFCTFC------VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
           C   C +C            G   +      V E R           L G          
Sbjct: 39  CAFRCGYCDFNTYTATELGGGASQASYAETAVQEVRLARR------VLPGLERPVDTVFF 92

Query: 240 LDGEKCTF--SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIK---AHGDLDVLMPYLHLP 294
             G        DL   L+ ++    L        + +   +        L+     +   
Sbjct: 93  GGGTPTLLPARDLGRMLAAVRDEFGLAADAEVTTEANPESVDQRYLEELLEAGFTRVSFG 152

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           +QS S  +L+ ++RRHT     + +    +   +  ++ D I G PGET +D+R +++  
Sbjct: 153 MQSASSHVLQILDRRHTPGRALEAVKEATAAGFE-HVNLDLIYGTPGETLEDWRTSLESA 211

Query: 355 DKIGYAQAFSFKYSPRLGTPGSN 377
                    ++      GT  + 
Sbjct: 212 LSAAPDHVSAYALIVEDGTQLAR 234


>gi|257063155|ref|YP_003142827.1| Fe-S oxidoreductase [Slackia heliotrinireducens DSM 20476]
 gi|256790808|gb|ACV21478.1| Fe-S oxidoreductase [Slackia heliotrinireducens DSM 20476]
          Length = 293

 Score = 54.6 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 37/214 (17%), Positives = 72/214 (33%), Gaps = 16/214 (7%)

Query: 167 DGGYNRKRGVTAFLTIQEGCDKF-CTFCVVPYTRGIEISRSLSQVVDEARKLIDN--GVC 223
               N        L + +GC    C FC + Y       R L  +  +  +L        
Sbjct: 6   PVYRNPYWPTWPLLEVTQGCTHNKCKFCTM-YKGVRFDLRPLEDIEADLAELRSTVPHAR 64

Query: 224 EITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGD 283
            I LL  N  A            F  +L  ++E    +   YT     D+ +  ++   +
Sbjct: 65  TIQLLSANPLAL-------PYSRFKPILEKINEYLPDIEFVYTQGRVTDLRNKTVEQLRE 117

Query: 284 L-DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPG- 341
           L D+ +  + +  +SG D  L  +N+ + A +  +   ++      I     F+ G  G 
Sbjct: 118 LRDLGLREISMGTESGDDWTLDRVNKGYHAEDIIEQCAKLDEA--GIRYWHSFLNGVAGR 175

Query: 342 -ETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
             + +    +  +  +       +   +   GTP
Sbjct: 176 SHSREHAVNSAKIFSQTNPMLVGTGGLTLFPGTP 209


>gi|257791016|ref|YP_003181622.1| Radical SAM domain-containing protein [Eggerthella lenta DSM 2243]
 gi|257474913|gb|ACV55233.1| Radical SAM domain protein [Eggerthella lenta DSM 2243]
          Length = 681

 Score = 54.6 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 38/236 (16%), Positives = 73/236 (30%), Gaps = 27/236 (11%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGK 238
           + I  GC + C FC           RS   VV+   + +   G  E++L   +       
Sbjct: 264 VEILRGCARGCRFCQAGMMYRPVRERSADNVVESVVQGLAETGYDEVSLTSLSSTDHS-- 321

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
               +  +    +    + KG VR+   +         + +           L    ++G
Sbjct: 322 ----QIASILTRINRACDGKG-VRISVPSQRLDSFGVDMAELVAGQKK--GGLTFAPEAG 374

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDF-------RATM 351
           + R+   +N+  T  +    +D              F++G P ETDDD        +   
Sbjct: 375 TQRLRDVINKNVTEDDLFGALDAAFKAGWRRC-KLYFMIGLPTETDDDIKGIASLAQRAY 433

Query: 352 DLVDKIGYA--------QAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLR 399
           D +                    + P+  TP      Q+       R+  L+  ++
Sbjct: 434 DRMKAATPPEQRGSLRMSVSCALFVPKAQTP-FQWDGQIPPEEALRRVQLLRNSVK 488


>gi|158520981|ref|YP_001528851.1| putative radical SAM protein [Desulfococcus oleovorans Hxd3]
 gi|158509807|gb|ABW66774.1| conserved hypothetical radical SAM protein [Desulfococcus
           oleovorans Hxd3]
          Length = 311

 Score = 54.6 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 28/133 (21%), Positives = 45/133 (33%), Gaps = 2/133 (1%)

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
               L      +  +V +   T         L          M +L + VQS  DR L  
Sbjct: 100 RLKALYDEALAVPDMVGIAVGTRPDCVDDAVLDLLASYAKQHMVWLEIGVQSALDRTLAI 159

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           +NR H        +    +V   + +    I+G PGE+ ++   T   +  +G A     
Sbjct: 160 INRGHDTACTTSAVQA--AVDRGLLVCGHIILGLPGESREEMVETGRYIADLGMAGVKFH 217

Query: 366 KYSPRLGTPGSNM 378
                 GTP + M
Sbjct: 218 VLYVVRGTPLAAM 230


>gi|27467535|ref|NP_764172.1| lipoyl synthase [Staphylococcus epidermidis ATCC 12228]
 gi|57866448|ref|YP_188103.1| lipoyl synthase [Staphylococcus epidermidis RP62A]
 gi|242242215|ref|ZP_04796660.1| lipoyl synthase [Staphylococcus epidermidis W23144]
 gi|251810298|ref|ZP_04824771.1| lipoyl synthase [Staphylococcus epidermidis BCM-HMP0060]
 gi|282875580|ref|ZP_06284451.1| lipoyl synthase [Staphylococcus epidermidis SK135]
 gi|293368301|ref|ZP_06614929.1| lipoic acid synthetase [Staphylococcus epidermidis M23864:W2(grey)]
 gi|38258096|sp|Q8CPW4|LIPA_STAES RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|71153809|sp|Q5HQN7|LIPA_STAEQ RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|27315079|gb|AAO04214.1|AE016746_4 lipoic acid synthetase [Staphylococcus epidermidis ATCC 12228]
 gi|57637106|gb|AAW53894.1| lipoate synthase [Staphylococcus epidermidis RP62A]
 gi|242234334|gb|EES36646.1| lipoyl synthase [Staphylococcus epidermidis W23144]
 gi|251806180|gb|EES58837.1| lipoyl synthase [Staphylococcus epidermidis BCM-HMP0060]
 gi|281295607|gb|EFA88130.1| lipoyl synthase [Staphylococcus epidermidis SK135]
 gi|291317548|gb|EFE57966.1| lipoic acid synthetase [Staphylococcus epidermidis M23864:W2(grey)]
 gi|319401798|gb|EFV90006.1| lipoic acid synthetase [Staphylococcus epidermidis FRI909]
 gi|329726864|gb|EGG63324.1| lipoyl synthase [Staphylococcus epidermidis VCU144]
 gi|329736817|gb|EGG73082.1| lipoyl synthase [Staphylococcus epidermidis VCU028]
 gi|329737596|gb|EGG73842.1| lipoyl synthase [Staphylococcus epidermidis VCU045]
          Length = 304

 Score = 54.6 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 42/256 (16%), Positives = 89/256 (34%), Gaps = 20/256 (7%)

Query: 112 AEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYN 171
              EEILR+   + + +     Y   + + R +         ++V ++ +  +I +    
Sbjct: 3   TRNEEILRKPDWLKIKLNTNDNYTGLKKMMREKN-------LHTVCEEAKCPNIHECWGA 55

Query: 172 RKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQN 231
           R+     F+ +   C + C FC V      E+   L++    A  +    +  + +    
Sbjct: 56  RR--TATFMILGAVCTRACRFCAVKTGLPNEL--DLNEPERVAESVELMNLKHVVITAV- 110

Query: 232 VNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL 291
               R    D     +++ +  + E      +    S      + L         ++ + 
Sbjct: 111 ---ARDDLRDQGSNVYAETVRKVRERNPFTTIEILPSDMGGDYEALETLMASRPDILNHN 167

Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351
              V+  +      +  R T     Q + R + ++PDI   S  +VG  GET ++   TM
Sbjct: 168 IETVRRLTP----RVRARATYDRTLQFLRRSKELQPDIPTKSSLMVGL-GETMEEIYETM 222

Query: 352 DLVDKIGYAQAFSFKY 367
           D +           +Y
Sbjct: 223 DDLRANDVDILTIGQY 238


>gi|315504223|ref|YP_004083110.1| oxygen-independent coproporphyrinogen iii oxidase [Micromonospora
           sp. L5]
 gi|315410842|gb|ADU08959.1| oxygen-independent coproporphyrinogen III oxidase [Micromonospora
           sp. L5]
          Length = 414

 Score = 54.6 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 41/226 (18%), Positives = 75/226 (33%), Gaps = 32/226 (14%)

Query: 186 CDKFCTFCVVPYTRGIE----ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD 241
           C   C +C        E     SR        A  ++        +LG +          
Sbjct: 46  CASRCGYCDFNTYTASELGGGASRE-----TYADSVLAELALAARVLGDSPPPRVDTVFV 100

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMP------------ 289
           G           L+ I   +   +  +   +++        + + + P            
Sbjct: 101 GGGTPTLLPADDLARILDGIDRVWGLAADAEVTTE-----ANPESVSPESLKTLRAAGYT 155

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
            + L +QS +  +L  ++RRH+A          R    +  ++ D I G PGET DDF A
Sbjct: 156 RISLGMQSAAPGVLAVLDRRHSAGRATAAALEARDAGFE-HVNLDLIYGTPGETADDFAA 214

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTP-GSNM-LEQVD---ENVKAER 390
           ++  V   G     ++      GT     M   ++    ++V A+R
Sbjct: 215 SLAQVVDAGVDHVSAYALIVEDGTRLAGRMRRGELPYPSDDVAADR 260


>gi|289578104|ref|YP_003476731.1| oxygen-independent coproporphyrinogen III oxidase
           [Thermoanaerobacter italicus Ab9]
 gi|289527817|gb|ADD02169.1| oxygen-independent coproporphyrinogen III oxidase
           [Thermoanaerobacter italicus Ab9]
          Length = 375

 Score = 54.6 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 31/213 (14%), Positives = 72/213 (33%), Gaps = 26/213 (12%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQ-VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK 244
           C + C +C      G          +     ++  N   +  ++   +         G  
Sbjct: 13  CKRKCYYCDFNSYAG--YDYLFEDYIRALLMEIESNSTKDYNVVSVYI---------GGG 61

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL-------MPYLHLPVQS 297
                  Y +  I   V   Y      +++  +       + L       +  + + +Q+
Sbjct: 62  TPNLLPPYYIEVILKSVFKYYKLVDDCEITIEMNPGLITEEKLEIYKANGINRVSIGLQA 121

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
             +R+LK + R HT  E+ +  + ++    +I I  D +   P +T  +++ T+  + K+
Sbjct: 122 FQNRLLKYIGRIHTIEEFLENYELVKKFFDNINI--DLMYALPTQTFKEWQETLKEIVKL 179

Query: 358 GYAQAFSFKYSPRLGTPGSNMLEQ-----VDEN 385
                 ++       T    + E+     VDE 
Sbjct: 180 QPTHISTYSLILEPNTSFYKLYEKGQLPIVDEE 212


>gi|218708511|ref|YP_002416132.1| putative Fe-S oxidoreductase [Vibrio splendidus LGP32]
 gi|218321530|emb|CAV17482.1| putative Fe-S oxidoreductase [Vibrio splendidus LGP32]
          Length = 317

 Score = 54.6 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 40/203 (19%), Positives = 65/203 (32%), Gaps = 19/203 (9%)

Query: 181 TIQEGCDKFCTFCVVPYT---RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG 237
           TI  G    CTFC V      +    S    Q+ D A ++                    
Sbjct: 39  TIGRG---GCTFCNVASFADEQTQVQSI-ADQLTDRAGEIARAKKYLAYFQAYTST---- 90

Query: 238 KGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDC-LIKAHGDLDV--LMPYLHLP 294
                E     ++     +  G   +        D     ++    +        +L L 
Sbjct: 91  ---YAEVQVLKNMYEEALKAPGAEIVGLCVGTRPDCVPDAVLDLLAEYVKQGYEIWLELG 147

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           +Q+ +D+ LK +NR H    Y  I  R R++   I + +  IVG P ET  D   T++ V
Sbjct: 148 LQTANDKTLKRINRGHDFTVYETITQRARAL--GIKVCTHLIVGLPKETKADNLETLEKV 205

Query: 355 DKIGYAQAFSFKYSPRLGTPGSN 377
              G             G+  + 
Sbjct: 206 LAAGTDGIKLHGLHIVEGSTMAK 228


>gi|182623998|ref|ZP_02951786.1| radical SAM domain protein [Clostridium perfringens D str. JGS1721]
 gi|177910891|gb|EDT73245.1| radical SAM domain protein [Clostridium perfringens D str. JGS1721]
          Length = 617

 Score = 54.6 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 79/224 (35%), Gaps = 18/224 (8%)

Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
           P+  +  +  K+ +  ++   D  E L +        R V        GC   C FC   
Sbjct: 220 PKYDDVPKKVKKRIINNFDQVDFPESLIVPYSEIVHDRVVLELF---RGCTNGCRFCQAG 276

Query: 197 YTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
                   +S   ++D+ARK++   G  E++L+   ++      + G       L+  L 
Sbjct: 277 MIYRPVREKSRKTLLDQARKMLKATGYDEVSLVS--LSTCDYSDIQG-------LVKDLI 327

Query: 256 EIKGLVRLRY--TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
           E  G   +     +      S  L+K    +      L    ++GS R+   +N+  T  
Sbjct: 328 EEHGKNNVSVALPSIRVDAFSVDLLKEIQKVRK--TGLTFAPEAGSQRMRDVINKGLTEE 385

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
              +             I   FI+G P ET +D      L +KI
Sbjct: 386 RILEAAKNAFESGWS-TIKLYFILGVPYETVEDAAEIGLLAEKI 428


>gi|154482570|ref|ZP_02025018.1| hypothetical protein EUBVEN_00237 [Eubacterium ventriosum ATCC
           27560]
 gi|149736595|gb|EDM52481.1| hypothetical protein EUBVEN_00237 [Eubacterium ventriosum ATCC
           27560]
          Length = 404

 Score = 54.6 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 38/205 (18%), Positives = 75/205 (36%), Gaps = 21/205 (10%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C K C +C         +S      ++   K ++  + EI L    ++ +    +     
Sbjct: 13  CVKKCDYC-------DFLSAPAD--LETKEKYVEALINEIKLSKNKMSEYVVDTVFIGGG 63

Query: 246 TFSDLLY-SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY-------LHLPVQS 297
           T S L    +S+I  ++R     S   +++            L  Y       +   +QS
Sbjct: 64  TPSLLEENQISKIMSVLRDNCNMSENPEITIECNPGTITESKLWEYKKSGINRISFGLQS 123

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
            +D  LKS+ R H    + +  +  R    D  I+ D +   PG+T   +  T++ V ++
Sbjct: 124 ANDEELKSIGRIHNYAGFLESYNLARKCGFD-NINVDLMSALPGQTLKSYEETLNKVVRL 182

Query: 358 GYAQAFSFKYSPRLGTPGSNMLEQV 382
                 ++       T    M ++V
Sbjct: 183 EPEHISAYSLIVEENT---LMYDRV 204


>gi|78779974|ref|YP_398086.1| Fe-S oxidoreductase [Prochlorococcus marinus str. MIT 9312]
 gi|78713473|gb|ABB50650.1| Elongator protein 3/MiaB/NifB [Prochlorococcus marinus str. MIT
           9312]
          Length = 539

 Score = 54.6 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 29/180 (16%), Positives = 59/180 (32%), Gaps = 8/180 (4%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISR-SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK 238
           +  + GC   C FCV     G ++    + +V+ E ++L D GV             +  
Sbjct: 256 VQTKRGCPHNCCFCVYTVVEGKQVRVNPVKEVIKEMKQLYDLGVRGFWFTDAQFIPAKKH 315

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
             D +      LL ++ +               ++   L +   D    M Y  + + SG
Sbjct: 316 IEDAKI-----LLQAIKDQGWEDINWAAYIRADNIDAELAQLMVDTG--MSYFEIGITSG 368

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           S  +++ M   +           +        +S ++      ET    R T+    ++ 
Sbjct: 369 SQELVRKMRLAYDLETVLNNCRMLVESGFKNHVSVNYSFNVFDETPSTIRQTIAYHRELE 428


>gi|295085090|emb|CBK66613.1| Biotin synthase and related enzymes [Bacteroides xylanisolvens
           XB1A]
          Length = 348

 Score = 54.6 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 30/216 (13%), Positives = 63/216 (29%), Gaps = 21/216 (9%)

Query: 169 GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI-EISR-SLSQVVDEARKLIDNGVCEIT 226
            +  K  +   + +   C   C +C +       E  R +L  ++D  R+    G     
Sbjct: 45  HFGNKIYIRGLIEVSNCCRNNCYYCGIRKGNPNIERYRLNLESILDCCRQGYKLGFRTFV 104

Query: 227 LLGQNVNAWRGKGLDGEKCTFSDLLYSLS---EIKGLVRLRYTTSHPRDMSDCLIKAHGD 283
           L G    A     ++             +    +    R  Y        +  L++    
Sbjct: 105 LQGGEDPALTDDRIEMTVARIRQNYPDCAITLSLGEKSRDAYERFFRAGANRYLLRHETH 164

Query: 284 LDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGET 343
            +     LH    SG               +  Q +  ++ +       +  +VG PG+T
Sbjct: 165 NESHYRQLHPAEMSG--------------KQRLQCLADLKDI--GYQTGTGIMVGSPGQT 208

Query: 344 DDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            +     +  ++K+         + P   TP +   
Sbjct: 209 VEHIIEDILFIEKLQPEMIGIGPFLPHHDTPFAQYP 244


>gi|158523009|ref|YP_001530879.1| radical SAM domain-containing protein [Desulfococcus oleovorans
           Hxd3]
 gi|158511835|gb|ABW68802.1| Radical SAM domain protein [Desulfococcus oleovorans Hxd3]
          Length = 451

 Score = 54.6 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 45/285 (15%), Positives = 104/285 (36%), Gaps = 22/285 (7%)

Query: 99  GDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVED 158
             + VV+ G  A    +   R +   + V+ P  + +    +  A  G   +  D   + 
Sbjct: 138 PKVPVVLGGVYATLYPDH-ARTNSGADAVM-PGAWEKDLPEIVAAHTG---MTLDPGFDP 192

Query: 159 KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR-GIEISRSLSQVVDEAR-K 216
              +         ++    A L    GC   C +C   +   G    R+   VV E   +
Sbjct: 193 AAWQDLPFPAIDLQRVINYAPLLTTRGCPFSCPYCANRFLHPGPMERRAPESVVKEIGFR 252

Query: 217 LIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS-HPRDMSD 275
              +GV +       +       +D E+  F  +   +      +R     + H R+++ 
Sbjct: 253 HTAHGVKDFAFYDDALL------IDPER-HFVPMAEQVIAKGWKLRFHTPNALHVREITP 305

Query: 276 CLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA-ISSD 334
            +      +      + L +++ S    +S + + TA E+   +  ++    D   + + 
Sbjct: 306 AVAGLMRQMG--FETVRLGLETTSFENRQSFDAKVTAQEFEHAVACLKQAGFDRRHLGAY 363

Query: 335 FIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT---PGS 376
            + G PG++ ++ + ++ +V + G     ++ Y+P   T   P +
Sbjct: 364 LLAGLPGQSMENIKDSISVVAQSGITPVPTY-YTPLPHTALWPAA 407


>gi|91792513|ref|YP_562164.1| radical SAM family protein [Shewanella denitrificans OS217]
 gi|91714515|gb|ABE54441.1| Radical SAM [Shewanella denitrificans OS217]
          Length = 658

 Score = 54.6 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 46/261 (17%), Positives = 82/261 (31%), Gaps = 28/261 (10%)

Query: 116 EILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRG 175
           E     P V++             + ++  G  V D     E       +         G
Sbjct: 322 EDENGQPHVHL-----NQNAQLHDIPQSEVGAPVYDGLPLDEYLSLCEMLNPMHRIWSDG 376

Query: 176 VTAFLTIQEGCDKF-CTFCVVPYTRGIEISRSLSQV-VDEARKLIDNGVCEITLLGQNVN 233
               LTI  GC    C+FC V          + + + VD   +LI+         GQ   
Sbjct: 377 RWNKLTIAHGCYWRKCSFCDVSLDYIDRYDTAGADILVDRIEQLIEE-------TGQ--T 427

Query: 234 AWRGKGLDGEKCTFSDLLYSLSE----IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMP 289
            +          T       L E    I     +R+     R  S    +   D   +  
Sbjct: 428 GFHFVDEALPPKTLFAFAKRLIERGVVISWWGNIRF----ERTFSPARCQLLADSGCIAV 483

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
                ++  SDR+LK M +  +     ++          I + +  + GFP +T+ +   
Sbjct: 484 SG--GLEVASDRLLKLMKKGVSVERVAKVTKAFSDA--GIMVHAYLMYGFPTQTEQETVD 539

Query: 350 TMDLVDKIGYAQAFSFKYSPR 370
           ++++V ++     F   Y  R
Sbjct: 540 SLEMVRQMMALGCFQSAYWHR 560


>gi|328951862|ref|YP_004369196.1| oxygen-independent coproporphyrinogen III oxidase [Desulfobacca
           acetoxidans DSM 11109]
 gi|328452186|gb|AEB08015.1| oxygen-independent coproporphyrinogen III oxidase [Desulfobacca
           acetoxidans DSM 11109]
          Length = 415

 Score = 54.6 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 32/164 (19%), Positives = 61/164 (37%), Gaps = 13/164 (7%)

Query: 234 AWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDC--LIKAHGDLDVLM--- 288
           +       G           +S +  L+R  +  +   +++          D   L    
Sbjct: 96  SQFDTFYLGGGTPSCLGQDEISTVFDLIRQGFVFTKDAEITLEANPDDVTADRLHLWGRL 155

Query: 289 --PYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDD 346
               L L VQS  D  L+ ++RRH A + RQ +   R    +  +  D + G PG+T D+
Sbjct: 156 GVNRLSLGVQSLLDAELRFLSRRHDALQARQALSLAREAGFE-NLGVDLMYGLPGQTKDN 214

Query: 347 FRATMDLVDKIGYAQAFSFKYSPRLGTP-----GSNMLEQVDEN 385
           + AT+D +          ++ +    TP        +++ + E 
Sbjct: 215 WLATLDSILVFQPEHLSCYQLTIEENTPLAAKRAQGLIKPLPEE 258


>gi|296196698|ref|XP_002745951.1| PREDICTED: lipoyl synthase, mitochondrial [Callithrix jacchus]
          Length = 372

 Score = 54.6 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 36/186 (19%), Positives = 67/186 (36%), Gaps = 15/186 (8%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLS--QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
           C + C FC V   R       L   +  + A+ + + G+  + L   +    R    DG 
Sbjct: 137 CTRGCRFCSVKTARNP---PPLDASEPYNTAKAIAEWGLDYVVLTSVD----RDDMPDGG 189

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIK-AHGDLDVLMPYLHLPVQSGSDRI 302
               +  +  L E    + +   T   R     + K A   LDV    +    +  S   
Sbjct: 190 AEHIAKTVSYLKERNPEILVECLTPDFRGNLKAIEKVALSGLDVYAHNVETVPELQS--- 246

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
            K  + R    +  +++   + V+PD+   +  ++G  GE D+   ATM  + +      
Sbjct: 247 -KVRDPRANFDQSLRVLKHAKKVQPDVISKTSIMLGL-GENDEQVYATMKALREADVDCL 304

Query: 363 FSFKYS 368
              +Y 
Sbjct: 305 TLGQYM 310


>gi|269215982|ref|ZP_06159836.1| radical SAM domain protein [Slackia exigua ATCC 700122]
 gi|269130241|gb|EEZ61319.1| radical SAM domain protein [Slackia exigua ATCC 700122]
          Length = 637

 Score = 54.6 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 66/350 (18%), Positives = 118/350 (33%), Gaps = 52/350 (14%)

Query: 109 VAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA-------RFGKRVVDTDYSVEDKF- 160
           V+ A  E+ILR    V  V  P  Y  + E   +A       RF       +  V + F 
Sbjct: 199 VSGASREDILRAMSHVRGVYVPSLYDIVDEEEAQATGSWAHPRFADVPAVVEKRVWEAFA 258

Query: 161 --ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEA-RKL 217
             +    V   Y         + +  GC + C FC           RS   +V  A R L
Sbjct: 259 QSDAYEPVIVPYAELIHDRLNVEVLRGCARGCRFCQAGMMYRPVRERSADNIVAAAIRGL 318

Query: 218 IDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI--KGLVRLRYTTSHPRDMSD 275
            + G  E++L   +           +     ++L  L+       + +   +        
Sbjct: 319 AETGYDEVSLTSLSTT---------DHSQIEEILRRLNRAFEGKGISVSVPSQRLDSFGV 369

Query: 276 CLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR-----IRSVRPDIA 330
            + +           L    ++G+ R+   +N+  T  +    I        R  +    
Sbjct: 370 EMAELVAGGKR--GGLTFAPEAGTQRLRDVINKNVTEEDLFGAISAAFSAGWRRCK---- 423

Query: 331 ISSDFIVGFPGETDDDFRATMDLVDK--------IGYAQAFSFKYS-------PRLGTPG 375
               F++G P ETDDD +    LV +        +   Q  S + S       P+  TP 
Sbjct: 424 --LYFMIGLPTETDDDIKGIASLVQRAYDVAKKSVPEDQRGSVRMSASCALFVPKAQTP- 480

Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFN-DACVGQIIEVLIEKHGKE 424
                Q+       R+  L++ ++ + V  +     G I+E ++ + G+E
Sbjct: 481 FQWDGQIPPEEAYRRIGLLRRSVKYRAVDIHWHEPDGSIVEAMMSRGGRE 530


>gi|325830870|ref|ZP_08164254.1| radical SAM domain protein [Eggerthella sp. HGA1]
 gi|325487277|gb|EGC89720.1| radical SAM domain protein [Eggerthella sp. HGA1]
          Length = 681

 Score = 54.6 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 38/236 (16%), Positives = 73/236 (30%), Gaps = 27/236 (11%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGK 238
           + I  GC + C FC           RS   VV+   + +   G  E++L   +       
Sbjct: 264 VEILRGCARGCRFCQAGMMYRPVRERSADNVVESVVQGLAETGYDEVSLTSLSSTDHS-- 321

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
               +  +    +    + KG VR+   +         + +           L    ++G
Sbjct: 322 ----QIASILTRINRACDGKG-VRISVPSQRLDSFGVDMAELVAGQKK--GGLTFAPEAG 374

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDF-------RATM 351
           + R+   +N+  T  +    +D              F++G P ETDDD        +   
Sbjct: 375 TQRLRDVINKNVTEDDLFGALDAAFKAGWRRC-KLYFMIGLPTETDDDIKGIASLAQRAY 433

Query: 352 DLVDKIGYA--------QAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLR 399
           D +                    + P+  TP      Q+       R+  L+  ++
Sbjct: 434 DRMKAATPPEQRGSLRMSVSCALFVPKAQTP-FQWDGQIPPEEALRRVQLLRNSVK 488


>gi|319650177|ref|ZP_08004324.1| HemZ protein [Bacillus sp. 2_A_57_CT2]
 gi|317398109|gb|EFV78800.1| HemZ protein [Bacillus sp. 2_A_57_CT2]
          Length = 504

 Score = 54.6 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 48/259 (18%), Positives = 90/259 (34%), Gaps = 26/259 (10%)

Query: 162 RLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY--TRGIEISRSLSQVVDEARKLID 219
           +L++V   YN K  V+ ++ I   C   C +C  P     G + S     V      L  
Sbjct: 159 QLAVVPDLYNLKNEVSIYIGIPF-CPTKCAYCTFPAYAINGRQGS-----VNSFLGGLHF 212

Query: 220 NGVCEITLLGQN----VNAWRGKGLDGEKC------TFSDLLYSLSEIKGLVRLRYTTSH 269
                   L +N       + G G             + ++  S  +++ +  +      
Sbjct: 213 EMRKIGEWLKENDVKITTVYYGGGTPTSITAEEMDMLYEEMYDSFPDVENIREVTVEAGR 272

Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329
           P  ++   ++     ++    + +  QS     LK++ R HT  E        R++  + 
Sbjct: 273 PDTITPEKLEVLKKWNI--DRISINPQSYIQETLKAIGRHHTVEETVDKFHLARNMGMN- 329

Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAE 389
            I+ D I+G PGE   +F  T+D  +K+          S       S M +   +   AE
Sbjct: 330 NINMDLIIGLPGEGVPEFSHTLDETEKLMPESLTVHTLS---FKRASEMTKNKQKYKVAE 386

Query: 390 R--LLCLQKKLREQQVSFN 406
           R  +  +     +     N
Sbjct: 387 REEIEKMMDMAEDWTKQHN 405


>gi|254226594|ref|ZP_04920175.1| oxygen-independent coproporphyrinogen III oxidase [Vibrio cholerae
           V51]
 gi|125620866|gb|EAZ49219.1| oxygen-independent coproporphyrinogen III oxidase [Vibrio cholerae
           V51]
          Length = 480

 Score = 54.6 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 52/298 (17%), Positives = 105/298 (35%), Gaps = 24/298 (8%)

Query: 127 VVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVD----GGYNRKRGVTAFLTI 182
           VV  Q       +L++  +      +  +  +  E  +I D         +R ++ ++ I
Sbjct: 23  VVPSQQIVWDQAILDKYNYSGPRYTSYPTAVEFHEAFTIADFDMACTQYPERPLSLYIHI 82

Query: 183 QEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG 242
              C K C +C          S    + +D     I        L+G+NV         G
Sbjct: 83  PF-CHKLCYYCGCNKVITRH-SHKADEYLDVLEHEIRQ--RASLLIGRNVTQLH---FGG 135

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL-------MPYLHLPV 295
              TF      +S +  L+R  +  +   ++S  +      L+VL          + + V
Sbjct: 136 GTPTF-LTNAQISRLMTLLRSEFHFADEAEISIEIDPREIQLEVLDHLRQEGFNRVSIGV 194

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS-DFIVGFPGETDDDFRATMDLV 354
           Q  +  + K +NR         +++R + +      ++ D I G P +T   F  T+  V
Sbjct: 195 QDFNKEVQKLVNREQDEQFIFDLVERAKQL--GFRSTNLDLIYGLPKQTAATFAQTLQQV 252

Query: 355 DKIGYAQAFSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVG 411
             +   +   F Y+       +   +++ D     E+L  LQ+ +     +     +G
Sbjct: 253 LTMQPGRLSVFNYAHMPQLFAAQRKIKEADLPAAEEKLAILQQTITTLTGAGYQ-FIG 309


>gi|325971236|ref|YP_004247427.1| oxygen-independent coproporphyrinogen III oxidase [Spirochaeta sp.
           Buddy]
 gi|324026474|gb|ADY13233.1| oxygen-independent coproporphyrinogen III oxidase [Spirochaeta sp.
           Buddy]
          Length = 387

 Score = 54.6 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 32/194 (16%), Positives = 62/194 (31%), Gaps = 14/194 (7%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C   C++C          S+ +   VD   + I   +   + + +    + G G  G   
Sbjct: 19  CTTCCSYCAFYSEPKEANSKYIDVYVDRLEQEI---LACASSVDRFTTIFVGGGNPGCLS 75

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
                   ++   GL        +P   S        +   L+  L + +QS  D  L  
Sbjct: 76  ASQLRRLLVAAKAGLSDEVTIEMNPETFSQDFFCLFSEG--LVTRLSMGIQSMDDPTLAR 133

Query: 306 MNRRHTAYEYRQIIDRIRSV--RPDIAISSDFIVGFPGETDD----DFRATMDLVDKIGY 359
           + R     +  + I   +       I +S D +V  PG+T +    D +  +   +    
Sbjct: 134 LGRNAHRKDNLRAIALAQKAHALYGIELSFDLMVCLPGQTTELAISDLQEILSFSEA--- 190

Query: 360 AQAFSFKYSPRLGT 373
                +  +   GT
Sbjct: 191 DHISLYCLTVEEGT 204


>gi|302519049|ref|ZP_07271391.1| radical SAM domain-containing protein [Streptomyces sp. SPB78]
 gi|302427944|gb|EFK99759.1| radical SAM domain-containing protein [Streptomyces sp. SPB78]
          Length = 656

 Score = 54.6 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 70/423 (16%), Positives = 125/423 (29%), Gaps = 73/423 (17%)

Query: 48  FFSQGYERVNSMDD-ADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVV-- 104
               G     + +  AD I    C +     + V      +R  K   +  G D +++  
Sbjct: 159 LVVAGGHAAFNPEPVADFI---DCAVIGDGEQAVLEITDVVRAWKAEGMPGGRDEVLLRL 215

Query: 105 --VAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFER 162
               G       +        +   V  ++                V+D D     K   
Sbjct: 216 AKTGGVYVPRFYDVEYLPDGRIARTVPNRSGVPWR------VSKHTVMDLDEWPYPKQPL 269

Query: 163 LSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN-G 221
           + + +  + R       + I  GC + C FC           RS++ + D   K +   G
Sbjct: 270 VPLAETVHERMS-----VEIFRGCTRGCRFCQAGMITRPVRERSITGIGDMVEKGLRATG 324

Query: 222 VCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAH 281
             E+ LL     +       G+        Y   +I     L   ++     +  L    
Sbjct: 325 FEEVGLLS---LSSADHSEIGDVAKGLADRYEEEKIG----LSLPSTRVDAFNVDLANEL 377

Query: 282 GDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR-----IRSVRPDIAISSDFI 336
                    L    + GS+R+ K +N+  +  +  + +        R V+        F+
Sbjct: 378 TRNGR-RSGLTFAPEGGSERMRKVINKMVSEEDLIRTVSTAYGNGWRQVK------LYFM 430

Query: 337 VGFPGETDDDFRATMDLVDKI---------GYA---QAFSFKYSPRLGTPGSNMLEQVDE 384
            G P ETD+D     D+  ++                     + P+  TP      Q+  
Sbjct: 431 CGLPTETDEDVLQIADMATRVIAEGRAASGRNDIRATVSIGGFVPKPHTP-FQWAPQLSP 489

Query: 385 NVKAERLLCLQKKLR---------------------EQQVSFNDACVGQIIEVLIEKHGK 423
                RL  L+ K+R                     E  +S  D  VG +I  + E  G+
Sbjct: 490 EDTDARLAKLRDKIRGDKKYGRSIGFRYHDGKPGIVEGLLSRGDRRVGAVIRAVYEDGGR 549

Query: 424 EKG 426
             G
Sbjct: 550 FDG 552


>gi|290476204|ref|YP_003469104.1| lipoate protein ligase, an iron-sulfur enzyme [Xenorhabdus bovienii
           SS-2004]
 gi|289175537|emb|CBJ82340.1| lipoate protein ligase, an iron-sulfur enzyme [Xenorhabdus bovienii
           SS-2004]
          Length = 315

 Score = 54.6 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 29/183 (15%), Positives = 67/183 (36%), Gaps = 12/183 (6%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V    G   +   ++    A+ + D  +  + +   +    R    DG   
Sbjct: 88  CTRRCPFCDV--AHGRPTAPDTNEPTKLAQTIQDMALRYVVITSVD----RDDLRDGGAQ 141

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAH-GDLDVLMPYLHLPVQSGSDRILK 304
            F+D + ++ E    +++       R   D  ++        +  +    V     R+ +
Sbjct: 142 HFADCISAIREKNPSIKIETLVPDFRGRMDRALEILTATPPDVFNHNLENV----PRVYR 197

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
            +          +++++ +   P+I   S  +VG  GET+++    M  + + G      
Sbjct: 198 QVRPGANYEWSLKLLEKFKETHPNIPTKSGLMVGL-GETNEEILEVMRDLRRHGVTMLTL 256

Query: 365 FKY 367
            +Y
Sbjct: 257 GQY 259


>gi|114565997|ref|YP_753151.1| oxygen-independent coproporphyrinogen III oxidase [Syntrophomonas
           wolfei subsp. wolfei str. Goettingen]
 gi|114336932|gb|ABI67780.1| oxygen-independent coproporphyrinogen III oxidase, putative
           [Syntrophomonas wolfei subsp. wolfei str. Goettingen]
          Length = 291

 Score = 54.6 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 34/199 (17%), Positives = 66/199 (33%), Gaps = 15/199 (7%)

Query: 185 GCDK-FCTFCVVPYTRGIEISRSLSQV---VDEARKLIDNGVCEITLLGQNVNAWRGKGL 240
           GC    CTFC + Y       R + ++   +  AR      +  +     N    + + L
Sbjct: 24  GCPHNRCTFCSL-YKNTKFRIRPVEEIKEDLRMARDYYGEYIESVFFADGNTIIMKTEQL 82

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300
                    L   L  I      R+      +    L  A       +  +H  ++SG D
Sbjct: 83  LDIFEYTRSLFPYLERITVYGSSRFVNKKSLEDLKRLRAA------GLKRIHTGMESGDD 136

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGE--TDDDFRATMDLVDKIG 358
            IL+ + +   + E      +++     I++S  ++VG  G+  + +    +   +    
Sbjct: 137 IILERIKKGTNSQEIISAGLKLKEA--GISVSEYYLVGIGGKERSREHALNSALTLSAFS 194

Query: 359 YAQAFSFKYSPRLGTPGSN 377
                   Y P   TP  +
Sbjct: 195 PDFIRLRTYVPMPNTPLYD 213


>gi|326917129|ref|XP_003204854.1| PREDICTED: CDK5 regulatory subunit-associated protein 1-like
          1-like, partial [Meleagris gallopavo]
          Length = 93

 Score = 54.6 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 9/44 (20%), Positives = 19/44 (43%), Gaps = 2/44 (4%)

Query: 15 SQIVDQCIVP--QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERV 56
                 ++P  Q+ +++++GC  N  D   M     + GY+  
Sbjct: 50 EDPPHDSVIPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKIT 93


>gi|291557787|emb|CBL34904.1| Fe-S oxidoreductase [Eubacterium siraeum V10Sc8a]
          Length = 636

 Score = 54.6 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 51/314 (16%), Positives = 99/314 (31%), Gaps = 52/314 (16%)

Query: 112 AEGEEILRRSPIVNVVVGPQTYYRLPEL-LERARFGKRVVDTDYSVEDKFERLSIVDGGY 170
           A  +   ++    + V G     R   + L +    + +  +++    +   +      Y
Sbjct: 223 AYAKSCRQQYDEQDEVYGKTMVQRHGNMMLVQNPPQRSLTQSEFDKAYELPYMKAYHPCY 282

Query: 171 NRKRGVTAFLTI------QEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDN-GV 222
            +  GV     +        GC  +C FC +   +G  I +RS   V++EA  L    G 
Sbjct: 283 EKGGGVPGIKEVEFSITHNRGCFGYCNFCSIALHQGRRIQTRSEESVINEAIDLTKKPGF 342

Query: 223 C-EITLLGQNVNAWRGKGLD---------GEKCT--------------FSDLLYSLSEIK 258
              I  +G     +R    D         G+KC               + ++L  +  IK
Sbjct: 343 KGYIHDVGGPTANFRRTSCDKQEKAGLCKGKKCLAPEPCPALKVDHSEYLEMLRKIRSIK 402

Query: 259 GLVR------LRYTTSHP---RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
            + R      +RY         +    L++ H     +   L +  +  S+++L  M + 
Sbjct: 403 NVKRVFIRSGIRYDYMMKDKNDEFFKELVEHH-----VSGQLKVAPEHASNKVLDLMGKP 457

Query: 310 HTAYEYRQIIDRIRSVRPDIA----ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           H    Y     +      +      +    +   PG T  +       + K         
Sbjct: 458 H-IEVYEDFEKKFYKYTKECGKEQYLVPYLMSSHPGCTIKEAVELAVFLKKHNIRPEQVQ 516

Query: 366 KYSPRLGTPGSNML 379
            + P  GT  + M 
Sbjct: 517 DFYPTPGTISTAMY 530


>gi|238764255|ref|ZP_04625207.1| hypothetical protein ykris0001_25200 [Yersinia kristensenii ATCC
           33638]
 gi|238697536|gb|EEP90301.1| hypothetical protein ykris0001_25200 [Yersinia kristensenii ATCC
           33638]
          Length = 300

 Score = 54.6 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 46/121 (38%), Gaps = 12/121 (9%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +L L +Q+ +D+ LK +NR H    Y+Q   R R+    + +    IVG PGE       
Sbjct: 141 WLELGLQTANDKTLKRINRGHDFACYQQTARRARAR--GLKVCCHLIVGLPGENQAQCME 198

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDAC 409
           T++ V   G             G+  +          KA R   L +   E+ V      
Sbjct: 199 TLEKVAASGVDGIKLHPLHIVEGSIMA----------KAWRAGRLPELALEEYVLTAGEM 248

Query: 410 V 410
           +
Sbjct: 249 I 249


>gi|168215760|ref|ZP_02641385.1| radical SAM domain protein [Clostridium perfringens NCTC 8239]
 gi|182382058|gb|EDT79537.1| radical SAM domain protein [Clostridium perfringens NCTC 8239]
          Length = 617

 Score = 54.6 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 79/224 (35%), Gaps = 18/224 (8%)

Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
           P+  +  +  K+ +  ++   D  E L +        R V        GC   C FC   
Sbjct: 220 PKYDDVPKKVKKRIINNFDQVDFPESLIVPYSEIVHDRVVLELF---RGCTNGCRFCQAG 276

Query: 197 YTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
                   +S   ++D+ARK++   G  E++L+   ++      + G       L+  L 
Sbjct: 277 MIYRPVREKSRKTLLDQARKMLKATGYDEVSLVS--LSTCDYSDIQG-------LVKDLI 327

Query: 256 EIKGLVRLRY--TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
           E  G   +     +      S  L+K    +      L    ++GS R+   +N+  T  
Sbjct: 328 EEHGKNNVSVALPSIRVDAFSVDLLKEIQKVRK--TGLTFAPEAGSQRMRDVINKGLTEE 385

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
              +             I   FI+G P ET +D      L +KI
Sbjct: 386 RILEAAKNAFESGWS-TIKLYFILGVPYETVEDAAEIGLLAEKI 428


>gi|157146756|ref|YP_001454075.1| lipoyl synthase [Citrobacter koseri ATCC BAA-895]
 gi|166226356|sp|A8AJH6|LIPA_CITK8 RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|157083961|gb|ABV13639.1| hypothetical protein CKO_02530 [Citrobacter koseri ATCC BAA-895]
          Length = 321

 Score = 54.6 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 30/183 (16%), Positives = 68/183 (37%), Gaps = 12/183 (6%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V    G  ++   ++ +  A+ + D  +  + +   +    R    DG   
Sbjct: 94  CTRRCPFCDV--AHGRPVAPDTNEPLKLAQTIADMALRYVVITSVD----RDDLRDGGAQ 147

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAH-GDLDVLMPYLHLPVQSGSDRILK 304
            F+D + ++ E    +++       R   D  ++        +  +    V     R+ +
Sbjct: 148 HFADCITAIREKSPAIKIETLVPDFRGRMDRALEILNATPPDVFNHNLENV----PRVYR 203

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
            +          ++++R +   P+I   S  +VG  GET+ +    M  + + G      
Sbjct: 204 QVRPGADYNWSLKLLERFKEAHPEIPTKSGLMVGL-GETNAEIIEVMRDLRRHGVTMLTL 262

Query: 365 FKY 367
            +Y
Sbjct: 263 GQY 265


>gi|57233572|ref|YP_182323.1| radical SAM domain-containing protein [Dehalococcoides ethenogenes
           195]
 gi|57224020|gb|AAW39077.1| radical SAM domain protein [Dehalococcoides ethenogenes 195]
          Length = 611

 Score = 54.6 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 43/235 (18%), Positives = 81/235 (34%), Gaps = 27/235 (11%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGK 238
           + I  GC + C FC           R  ++V+     ++DN G  EI+LL          
Sbjct: 259 VEISRGCSRGCRFCSAGIIYRPVRVRPAAEVLSAVEGILDNCGYDEISLLS-----LSCS 313

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
              G +     L    +     + L   +      S  L+            L    ++ 
Sbjct: 314 DYPGIENLVKTLAGKYA--DKHLALSLPSLRLTPDSVGLVNVLAGGRK--SGLTFAPEAA 369

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPD--IAISSDFIVGFPGETDDDFRATMDLVDK 356
           S+R+ + +N+  +     ++ D  R+       +    F++G P ETD+D  A   +  +
Sbjct: 370 SERLQRVINKLTSEE---ELCDTARTAFESGWTSFKMYFMIGLPTETDEDAAAICQMAGR 426

Query: 357 I-----------GYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLRE 400
           +              +     Y P+  TP      Q+DE     R   +++ L+ 
Sbjct: 427 VNSLSRGAPGRRPQIRLSLASYVPKAHTP-FQWEAQLDEESLYRRADIVRQGLKR 480


>gi|148546842|ref|YP_001266944.1| coproporphyrinogen III oxidase [Pseudomonas putida F1]
 gi|148510900|gb|ABQ77760.1| coproporphyrinogen III oxidase, anaerobic [Pseudomonas putida F1]
          Length = 460

 Score = 54.6 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 41/263 (15%), Positives = 90/263 (34%), Gaps = 21/263 (7%)

Query: 160 FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR------SLSQVVDE 213
           F+ L+ +       R ++ ++ +   C   C +C        + +R       L Q +  
Sbjct: 38  FDLLNALRESRRAVRPLSLYVHVPF-CANICYYCACNKVITKDRARAAPYLQRLEQEIQL 96

Query: 214 ARKLID--NGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPR 271
               +D    V ++   G          L     T     + L +  G   +        
Sbjct: 97  IACHLDPKQRVEQLHFGGGTPTFLSHVELRQLMATLRQHFHLLDDDSGDYGIEIDPREAD 156

Query: 272 DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAI 331
             +  L++  G        + L VQ     + +++NR  +  + R +I+  R+++   ++
Sbjct: 157 WSTMGLLRELG-----FNRVSLGVQDLDPAVQRAINRLQSLEQTRTLIEAARTLQFR-SV 210

Query: 332 SSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY--SPRLGTPGSNML-EQVDENVKA 388
           + D I G P +T + F  T++ V ++   +   F Y   P    P   +    +      
Sbjct: 211 NLDLIYGLPKQTPEGFARTVEEVIRLQPDRLSVFNYAHLPERFMPQRRIDSNDLPSAAAK 270

Query: 389 ERLLCLQKKLREQQVSFNDACVG 411
             L  L   + +   +     +G
Sbjct: 271 --LEMLHATIDQLTAAGY-RYIG 290


>gi|330684920|gb|EGG96602.1| lipoyl synthase [Staphylococcus epidermidis VCU121]
          Length = 305

 Score = 54.2 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 41/256 (16%), Positives = 89/256 (34%), Gaps = 20/256 (7%)

Query: 112 AEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYN 171
            + EEILR+   + + +     Y   + + R +         ++V ++ +  +I +    
Sbjct: 3   TKNEEILRKPDWLKIKLNTNENYTGLKKMMREKN-------LHTVCEEAKCPNIHECWGE 55

Query: 172 RKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQN 231
           R+     F+ +   C + C FC V      E+   L++    A  +    +  + +    
Sbjct: 56  RR--TATFMILGAVCTRACRFCAVKTGLPNEL--DLNEPERVAESVELMNLKHVVITAV- 110

Query: 232 VNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL 291
               R    D     +++ +  +        +    S      D L         ++ + 
Sbjct: 111 ---ARDDLRDAGSNVYAETVRKVRARNPFTTIEILPSDMGGDYDALETLMASKPDILNHN 167

Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351
              V+  +      +  R T     + + R + ++PDI   S  +VG  GET ++   TM
Sbjct: 168 IETVRRLTP----RVRARATYDRTLEFLRRSKELQPDIPTKSSLMVGL-GETMEEIYETM 222

Query: 352 DLVDKIGYAQAFSFKY 367
           D +           +Y
Sbjct: 223 DDLRANDVDILTIGQY 238


>gi|325274397|ref|ZP_08140486.1| coproporphyrinogen III oxidase [Pseudomonas sp. TJI-51]
 gi|324100469|gb|EGB98226.1| coproporphyrinogen III oxidase [Pseudomonas sp. TJI-51]
          Length = 460

 Score = 54.2 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 43/271 (15%), Positives = 91/271 (33%), Gaps = 25/271 (9%)

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR------SL 207
           +S    F+ L  +       R ++ ++ +   C   C +C        + +R       L
Sbjct: 32  HSEVGSFDLLHALRESRRAVRPLSLYVHVPF-CANICYYCACNKVITKDRARAAPYLQRL 90

Query: 208 SQVVDEARKLID--NGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            Q +      +     V ++   G          L     T     + L +  G   +  
Sbjct: 91  EQEIQLIACHLAPKQRVEQLHFGGGTPTFLSHVELRQLMTTLRQHFHLLDDDSGDYGIEI 150

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
                   +  L++  G        + L VQ     + +++NR  +  + R +I+  R++
Sbjct: 151 DPREADWSTMGLLRELG-----FNRVSLGVQDLDPAVQRAINRLQSLEQTRTLIEAARTL 205

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV--- 382
           +   +I+ D I G P +T   F  T++ V ++   +   F Y+          + Q    
Sbjct: 206 QFR-SINLDLIYGLPKQTPQGFARTVEEVIRLQPDRLSVFNYAHLP----ERFMPQRRID 260

Query: 383 --DENVKAERLLCLQKKLREQQVSFNDACVG 411
             D    A +L  L   + +   +     +G
Sbjct: 261 SSDLPSAAAKLEMLHATIEQLTAAGY-RYIG 290


>gi|239636553|ref|ZP_04677555.1| lipoyl synthase [Staphylococcus warneri L37603]
 gi|239597908|gb|EEQ80403.1| lipoyl synthase [Staphylococcus warneri L37603]
          Length = 305

 Score = 54.2 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 41/256 (16%), Positives = 89/256 (34%), Gaps = 20/256 (7%)

Query: 112 AEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYN 171
            + EEILR+   + + +     Y   + + R +         ++V ++ +  +I +    
Sbjct: 3   TKNEEILRKPDWLKIKLNTNENYTGLKKMMREKN-------LHTVCEEAKCPNIHECWGE 55

Query: 172 RKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQN 231
           R+     F+ +   C + C FC V      E+   L++    A  +    +  + +    
Sbjct: 56  RR--TATFMILGAVCTRACRFCAVKTGLPNEL--DLNEPERVAESVELMNLKHVVITAV- 110

Query: 232 VNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL 291
               R    D     +++ +  +        +    S      D L         ++ + 
Sbjct: 111 ---ARDDLRDAGSNVYAETVRKVRARNPFTTIEILPSDMGGDYDALETLMASKPDILNHN 167

Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351
              V+  +      +  R T     + + R + ++PDI   S  +VG  GET ++   TM
Sbjct: 168 IETVRRLTP----RVRARATYDRTLEFLRRSKELQPDIPTKSSLMVGL-GETMEEIYETM 222

Query: 352 DLVDKIGYAQAFSFKY 367
           D +           +Y
Sbjct: 223 DDLRANDVDILTIGQY 238


>gi|224585814|ref|YP_002639613.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|224470342|gb|ACN48172.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
          Length = 485

 Score = 54.2 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 40/248 (16%), Positives = 87/248 (35%), Gaps = 20/248 (8%)

Query: 173 KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEI--TLLGQ 230
           +R ++ ++ I   C K C FC        +  +   Q +D   + I +         + Q
Sbjct: 78  ERPLSLYVHIPF-CHKLCYFCGCNKIVTRQQHK-ADQYLDALEQEIRHRAPLFADRHVSQ 135

Query: 231 NVNAWRGKGLDGEKCTFSDLLYSLSE-----IKGLVRLRYTTSHPRDMSDCLIKAHGDLD 285
            ++   G      K   S L+  L E         + +      PR++   ++       
Sbjct: 136 -LHWGGGTPTYLNKAQISRLMTLLRENFHFNTDAEISIEV---DPREIDLDVLDHLRAEG 191

Query: 286 VLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS-DFIVGFPGETD 344
                L + VQ  +  + + +NR         +++  R +      ++ D I G P +T 
Sbjct: 192 --FNRLSMGVQDFNKEVQRLVNREQDEEFIFALLNHARDI--GFTSTNIDLIYGLPKQTP 247

Query: 345 DDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQV 403
           + F  T+  V ++   +   F Y+       +   ++  D     ++L  LQ+ +     
Sbjct: 248 ESFAFTLKRVTELNPDRLSVFNYAHLPTLFAAQRKIKDADLPSAQQKLDILQETIVSLTQ 307

Query: 404 SFNDACVG 411
           +     +G
Sbjct: 308 AGYQ-FIG 314


>gi|158338646|ref|YP_001519823.1| radical SAM domain-containing protein [Acaryochloris marina
           MBIC11017]
 gi|158308887|gb|ABW30504.1| radical SAM domain protein [Acaryochloris marina MBIC11017]
          Length = 881

 Score = 54.2 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 71/232 (30%), Gaps = 24/232 (10%)

Query: 156 VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEAR 215
           V D     SI    Y +       + ++ GC + C FC               QVVD   
Sbjct: 240 VADPMPAYSIGLVPYVQTVHDRLTIEVRRGCTRGCRFCQPGMLTRPARDVEPEQVVDAIE 299

Query: 216 KLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMS 274
             +   G  E +LL                    ++   L      V L   +       
Sbjct: 300 TGMRETGYNEFSLLS-----LSCSDYLALPAVGMEIKNRLK--DENVSLSLPSQRVDRFD 352

Query: 275 DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSD 334
           + +    G        L    ++G+ R+   +N+  T  E  + I           +   
Sbjct: 353 EDIANIIGGTRN--TGLTFAPEAGTQRMRDIINKGLTNEELLRGIKTAHEQGWS-KVKLY 409

Query: 335 FIVGFPGETDDD---FRATMDLV---------DKIGYAQAFSFKYSPRLGTP 374
           F++G PGETD D      T+  +          ++ +       ++P+  TP
Sbjct: 410 FMIGLPGETDADVLGIAETIRWLRRECQGQGKRRLNF-NITISNFTPKPHTP 460


>gi|301058192|ref|ZP_07199242.1| radical SAM family uncharacterized protein [delta proteobacterium
           NaphS2]
 gi|300447694|gb|EFK11409.1| radical SAM family uncharacterized protein [delta proteobacterium
           NaphS2]
          Length = 834

 Score = 54.2 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 49/286 (17%), Positives = 94/286 (32%), Gaps = 22/286 (7%)

Query: 130 PQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKF 189
                 + E+L +    K V     S  D +         +         + I  GC + 
Sbjct: 211 HDADGSIAEILPKRDDYKWVNKAVLSRLDIYPYPERQIVSFTELVHDRVAVEISRGCTRG 270

Query: 190 CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSD 249
           C FC           RS   +++ A          + L G   +        G+      
Sbjct: 271 CRFCQAGMIYRPVRERSPEAILNIAE-------KTLKLTGYE-DLSLLSLSSGDYSHIGS 322

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY-LHLPVQSGSDRILKSMNR 308
           LL +L +         +    R  S    +    +  +      L  ++G++R+ + +N+
Sbjct: 323 LLSTLMDRHSSNHTSVSLPSLRVDSLD-AEMMAQIKRVRKTGFTLAPEAGNNRLRRVINK 381

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI-GYA------- 360
             T  +  +    +      + I   F++G P E DDD R  +DL ++I   +       
Sbjct: 382 GLTQSDILETAKIVYRSGWKL-IKLYFMIGLPFEEDDDLRDIIDLAEQITRLSGKKGRRE 440

Query: 361 --QAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVS 404
                   + P+  TP   M  Q+       R+  ++  LR+ +V 
Sbjct: 441 TVNVSISTFVPKSHTPFMWMP-QITLEESRRRIELIRDGLRKSRVR 485


>gi|260888409|ref|ZP_05899672.1| radical SAM domain protein [Selenomonas sputigena ATCC 35185]
 gi|330838277|ref|YP_004412857.1| Radical SAM domain protein [Selenomonas sputigena ATCC 35185]
 gi|260861945|gb|EEX76445.1| radical SAM domain protein [Selenomonas sputigena ATCC 35185]
 gi|329746041|gb|AEB99397.1| Radical SAM domain protein [Selenomonas sputigena ATCC 35185]
          Length = 617

 Score = 54.2 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 57/326 (17%), Positives = 110/326 (33%), Gaps = 47/326 (14%)

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQ---------EGCDKFCTFCVVP 196
           G R++D   S +     +  +D     ++ V  +L I           GC + C FC   
Sbjct: 220 GLRILDAAASPQIYRRVVKDLDAAPFLEKPVVPYLGIVHDRLMLELFRGCTRGCRFCQAG 279

Query: 197 YTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
                   R    +   AR L D+ G  E++L   +   +         C    +   L+
Sbjct: 280 MAYRPVRERRPETLESLARTLFDSTGYNEMSLTSLSSADYS--------CLSPLVDGLLA 331

Query: 256 EIKGLVRLRYTTSHPRD-MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
             +G        S   D  S  + +    +      L    ++G+ R+   +N+  T  +
Sbjct: 332 GTQGERVSFSLPSLRIDSFSVDIAERLQQVRK--SGLTFAPEAGTQRLRDVINKNVTEDD 389

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDF-------RATMDLVDKIG-----YAQA 362
               +          A+   F++G P ETD+D        +  +D   ++          
Sbjct: 390 LLHSVRTAFEQGWK-AVKLYFMMGLPTETDEDIVGIAELAQKVVDCYKEVKGKRGVKVTV 448

Query: 363 FSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFN----DACV-------- 410
               + P+  TP      QV +     R   L++ +R++ +SF+     A V        
Sbjct: 449 SVSCFVPKAYTP-FQWFAQVPQEEFERRQRLLKESIRDRAISFHYHDARASVLEGALSRG 507

Query: 411 GQIIEVLIEKHGKEKGKLVGRSPWLQ 436
            + +  +IE   +   K  G +   +
Sbjct: 508 DRRLSAVIETAWRNGAKFDGWTDQFK 533


>gi|255524264|ref|ZP_05391223.1| Radical SAM domain protein [Clostridium carboxidivorans P7]
 gi|296185385|ref|ZP_06853795.1| hypothetical protein CLCAR_0808 [Clostridium carboxidivorans P7]
 gi|255512089|gb|EET88370.1| Radical SAM domain protein [Clostridium carboxidivorans P7]
 gi|296050219|gb|EFG89643.1| hypothetical protein CLCAR_0808 [Clostridium carboxidivorans P7]
          Length = 362

 Score = 54.2 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 32/205 (15%), Positives = 68/205 (33%), Gaps = 4/205 (1%)

Query: 176 VTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW 235
           +       EGC   C FC      G           +   + +     E +++  +    
Sbjct: 7   IIPIFVPHEGCPHNCVFCNQNTITGSSGKIDAEFTRNTIEEYLKTIKRENSIVEVSFFGG 66

Query: 236 RGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPV 295
               +  EK      +    + KG + L + ++ P  + D ++    +  V +  + L V
Sbjct: 67  TFTAISMEKQKEFLAVAKEYKEKGFIDLIHLSTRPDYIDDEILTNLKNYSVDV--IELGV 124

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
           QS  + +L    R H+  +  +  + I+       +    ++G PG+T +    T     
Sbjct: 125 QSLDEEVLLKSGRGHSPEDVVKASNLIKEY--GFVLGHQIMLGLPGDTFEKDIETTKKSI 182

Query: 356 KIGYAQAFSFKYSPRLGTPGSNMLE 380
            +       +       TP   M +
Sbjct: 183 LMKPDIYRIYPALVIKDTPMEKMYK 207


>gi|227821854|ref|YP_002825824.1| lipoyl synthase [Sinorhizobium fredii NGR234]
 gi|227340853|gb|ACP25071.1| lipoyl synthase [Sinorhizobium fredii NGR234]
          Length = 323

 Score = 54.2 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 32/194 (16%), Positives = 70/194 (36%), Gaps = 11/194 (5%)

Query: 174 RGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVN 233
           +    F+ + E C + C FC V    G   +  L +  + A+ +   G+  + +   +  
Sbjct: 75  KKHATFMIMGEICTRACAFCNVS--TGKPNALDLDEPENVAKAVKQMGLSHVVITSVD-- 130

Query: 234 AWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHL 293
             R    DG    F  +++++ E   L  +   T         L +       +  +   
Sbjct: 131 --RDDLDDGGAEHFEKVIFAIREASPLTTIEILTPDFLRKPGALERVVAAKPDVFNHNLE 188

Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
            V   S+ +      R+  +   +++ R++ + P +   S  +VG  GE  ++    MD 
Sbjct: 189 TV--PSNYLTVRPGARY--FHSIRLLQRVKELDPTMFTKSGIMVGL-GEERNEVLQLMDD 243

Query: 354 VDKIGYAQAFSFKY 367
           +           +Y
Sbjct: 244 LRTADVDFLTIGQY 257


>gi|220905467|ref|YP_002480779.1| oxygen-independent coproporphyrinogen III oxidase [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
 gi|219869766|gb|ACL50101.1| oxygen-independent coproporphyrinogen III oxidase [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
          Length = 484

 Score = 54.2 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 75/220 (34%), Gaps = 27/220 (12%)

Query: 186 CDKFCTFCVV---PYTRG-IEISRSLSQVVDEARKLIDNGVCEITLLGQNVN-AWRGKGL 240
           C   C +C     P  RG   +S          R  +D    E+   G  +  +      
Sbjct: 24  CSTRCRYCAFYSSPLGRGVDPVSSP------AVRDYVDTLFMELAHWGDRLGGSPVQTVF 77

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCL--------IKAHGDLDVLMPYLH 292
            G           ++ +   +   +T     +++            +    L+  +  L 
Sbjct: 78  FGGGTPSLLPPRVIALVMERLGRYFTLVPKAEVTLEANPESLRGGHRVAQYLEAGVNRLS 137

Query: 293 LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352
           + +QS  + +L+ + R H A +        R       I+ D + G PG++   +  T+ 
Sbjct: 138 IGIQSLDEGMLRMLGRPHKAQDSLHAAFLAREA-GCANINVDLMWGLPGQSVRQWLQTLK 196

Query: 353 LVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLL 392
            V ++      ++  +   GTP       ++ +V+  RL+
Sbjct: 197 DVMRMSPDHISAYGLTLEPGTP-------LELDVEEGRLM 229


>gi|254409581|ref|ZP_05023362.1| radical SAM domain protein [Microcoleus chthonoplastes PCC 7420]
 gi|196183578|gb|EDX78561.1| radical SAM domain protein [Microcoleus chthonoplastes PCC 7420]
          Length = 555

 Score = 54.2 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 56/287 (19%), Positives = 105/287 (36%), Gaps = 35/287 (12%)

Query: 177 TAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR 236
              + +   C + C FC+  Y      + S +  +  A +        I LLG +V    
Sbjct: 243 IYMVEVVRSCPEMCRFCLASYLTLPFRTPSATDSLIPAIERGLTVTKRIGLLGASVTQH- 301

Query: 237 GKGLDGEKCTFSDLLYSLSEIK-GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPV 295
                     F  LL  L++     VRL   +     ++  L +     D     + + V
Sbjct: 302 --------PEFEVLLDYLAQPDYDDVRLSIASVRTNTVTPKLAETLSKRDT--RSITIAV 351

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD--IAISSDFIVGFPGETDDDFRATMDL 353
           +SGS+R+ + +N++      ++II    + +     A+    +VG PGE   D   T+ +
Sbjct: 352 ESGSERLRQIINKK---LNNQEIIQAAINAKAGGLKALKLYGMVGVPGEEMSDVEQTVAM 408

Query: 354 VDKIGYA------QAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFN- 406
           +  I  A            + P+  TP              +RL  LQK LR Q + F  
Sbjct: 409 MKAIKKAAPGLRLTLGCSTFVPKAHTP-FQWFGVNPAA--QKRLKYLQKALRSQGIDFRP 465

Query: 407 DACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKV 453
           ++    +I+ LI +  +   +L+  +             ++G   + 
Sbjct: 466 ESYNWSVIQALISRGDRRLSELLELTRHY--------GDSVGSFRRA 504


>gi|157147353|ref|YP_001454672.1| coproporphyrinogen III oxidase [Citrobacter koseri ATCC BAA-895]
 gi|157084558|gb|ABV14236.1| hypothetical protein CKO_03145 [Citrobacter koseri ATCC BAA-895]
          Length = 457

 Score = 54.2 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 40/248 (16%), Positives = 87/248 (35%), Gaps = 20/248 (8%)

Query: 173 KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNV 232
           +R ++ ++ I   C K C FC         ++R   +       L    +    L     
Sbjct: 50  ERPLSLYVHIPF-CHKLCYFC----GCNKIVTRQQHKADQYLDALEQEIIHRAPLFA--- 101

Query: 233 NAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL----- 287
                +   G           +S +  L+R  +  +   ++S  +     +LDVL     
Sbjct: 102 GRRVSQLHWGGGTPTYLNKAQISRLMTLLRGNFHFNDDVEISIEVDPREIELDVLDHLRA 161

Query: 288 --MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS-DFIVGFPGETD 344
                L + VQ  +  + + +NR         +++  R +      ++ D I G P +T 
Sbjct: 162 QGFNRLSMGVQDFNKDVQRLVNREQDEEFIFSLLNHAREI--GFTSTNIDLIYGLPKQTP 219

Query: 345 DDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQV 403
           + F  T+  V ++   +   F Y+       +   +++ D     ++L  LQ+ +     
Sbjct: 220 ESFAFTLRRVAELSPDRLSVFNYAHLPTLFAAQRKIKEADLPSAQQKLDILQETISSLTE 279

Query: 404 SFNDACVG 411
           +     +G
Sbjct: 280 TGYQ-FIG 286


>gi|154254013|ref|YP_001414837.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Parvibaculum lavamentivorans DS-1]
 gi|154157963|gb|ABS65180.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Parvibaculum lavamentivorans DS-1]
          Length = 385

 Score = 54.2 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 44/227 (19%), Positives = 77/227 (33%), Gaps = 19/227 (8%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQV--VDEARKLIDNGVCEITLLGQ----NVNAWRGKG 239
           C   C +C          S  ++ V     A+ L         L G     ++    G  
Sbjct: 20  CQSKCPYC-------DFNSHVVANVDQARWAKALTRELQYMRGLTGPRSVRSIFFGGGTP 72

Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
              E  T   +L  ++ +  + +    T      S    +  G     +  L L VQS  
Sbjct: 73  SLTEPATVEAVLTQIAALWTVEQGAEITLEANPTSVEAARFRGYRKAGVNRLSLGVQSLD 132

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
           DR LK + R HTA E  + I   R   P ++   D I   PG+T + + A +        
Sbjct: 133 DRELKFLGRLHTADEALRAIALARETFPRLSF--DLIYARPGQTKEKWTAELRAALAHAV 190

Query: 360 AQAFSFKYSPRLGTPGSNMLE----QVDENVKAERLLCLQKKLREQQ 402
                ++ +    T  + + E    ++    +A  L  L  ++  + 
Sbjct: 191 DHLSLYQLTIEEETAFARLYEKGAFKLPGEDEAAELYALTGEIAAEA 237


>gi|83952124|ref|ZP_00960856.1| lipoyl synthase [Roseovarius nubinhibens ISM]
 gi|83837130|gb|EAP76427.1| lipoyl synthase [Roseovarius nubinhibens ISM]
          Length = 325

 Score = 54.2 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 41/243 (16%), Positives = 79/243 (32%), Gaps = 19/243 (7%)

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
           R +  D+ +    E     + G    +G    + + E C + CTFC +   +  E     
Sbjct: 50  RKIMRDHKLVTVCEEAGCPNVGECWNQGHATMMIMGEVCTRACTFCNIATGKPPEDLDPF 109

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
                 A  +   G+  + +   +    R    DG    F+  + ++        +   T
Sbjct: 110 E-PGRVADAVQKLGLNHVVVTSVD----RDDVKDGGAEHFAQTIRAIRHRSPGTTIEILT 164

Query: 268 SHPRDMSDCLIKAH--GDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY-RQIIDRIRS 324
               +    +++       DV    L       +   L    R    Y +  +++ R++ 
Sbjct: 165 PDFINCDPAVLELVVEAKPDVFNHNLE------TVPGLYPEVRPGARYFHSLRLLQRVKE 218

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ--V 382
           + P I   S  +VG  GET       MD +           +Y     TP  + L++   
Sbjct: 219 MDPSIFTKSGIMVGL-GETRQQVHQVMDDMRAAQIDFLTIGQY--LQPTPKHHTLDRFVT 275

Query: 383 DEN 385
            E 
Sbjct: 276 PEE 278


>gi|317968682|ref|ZP_07970072.1| Elongator protein 3/MiaB/NifB [Synechococcus sp. CB0205]
          Length = 887

 Score = 54.2 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 43/255 (16%), Positives = 81/255 (31%), Gaps = 36/255 (14%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGK 238
           + I+ GC + C FC                VV+     ++  G  + +LL          
Sbjct: 273 VEIRRGCTRGCRFCQPGMLTRPARDVEPQAVVEAIETGMERTGYSDFSLLS-----LSCS 327

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
                     +L   L+     V L   +       + +    G        L    ++G
Sbjct: 328 DYLALPAVGVELRNRLA--DKNVTLTLPSQRVDRFDENIAHILGGTRKA--GLTFAPEAG 383

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRP--DIAISSDFIVGFPGETDDD---FRATMDL 353
           + R+   +N+  T     +++  IR+        +   F++G PGETD D      T   
Sbjct: 384 TQRLRDIVNKGLT---DAELLRGIRTAMESGYRKVKLYFMIGLPGETDSDVLGIAETCRS 440

Query: 354 VDKIGYA------QAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQ------ 401
           + +                ++P+  TP       V       R   L++ LR+       
Sbjct: 441 LQQQCRDLGRLELNLTISNFTPKPHTPFQ--WHSVSTAEFVRRQQRLREALRQLRGLKTN 498

Query: 402 ----QVSFNDACVGQ 412
               ++S  +  VG+
Sbjct: 499 FTDVRLSAMEDFVGR 513


>gi|270488043|ref|ZP_06205117.1| coproporphyrinogen dehydrogenase [Yersinia pestis KIM D27]
 gi|270336547|gb|EFA47324.1| coproporphyrinogen dehydrogenase [Yersinia pestis KIM D27]
          Length = 331

 Score = 54.2 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 27/144 (18%), Positives = 56/144 (38%), Gaps = 5/144 (3%)

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
            PR++   ++            L + VQ  +  + + +NR         +I R +++  +
Sbjct: 21  DPREIELDVLDHLRAEG--FNRLSMGVQDFNKEVQRLVNREQDEDFIFALIARAKALGFN 78

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQVDENVK 387
            + + D I G P +T + F  T+  V ++   +   F Y+       +   ++  D    
Sbjct: 79  -STNIDLIYGLPKQTPESFAFTLKRVAELNPDRLSVFNYAHLPSLFAAQRKIKDADLPTA 137

Query: 388 AERLLCLQKKLREQQVSFNDACVG 411
            +RL  LQ  +R    S     +G
Sbjct: 138 EQRLDILQHTIRFLTESGYQ-FIG 160


>gi|168698128|ref|ZP_02730405.1| Fe-S oxidoreductase [Gemmata obscuriglobus UQM 2246]
          Length = 623

 Score = 54.2 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 43/297 (14%), Positives = 85/297 (28%), Gaps = 28/297 (9%)

Query: 71  HIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGP 130
            +     E +   + +   LK   ++EG          +A+  G      +P        
Sbjct: 166 FVIGDGEESLPWVMEKWMALKEVAVREGDLSHKRRLDMLAELVGSTKWAYAPCFYEFDYH 225

Query: 131 QTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGG---YNRKRGVTAFLTIQEGCD 187
                    + R R    V     ++    + + +       + +       + I  GC 
Sbjct: 226 ADGTI--AAVNRTRSDVPVQIESCTIAQDLDDIPLPTKPVVSFVQTPHDRIAIEIMRGCP 283

Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTF 247
             C FC     +     RS+  +V  A +   N        G N           +   F
Sbjct: 284 WQCRFCQSTVIKRPLRVRSVETIVQAALESYRN-------TGMN-EVSLLSLSSSDYPHF 335

Query: 248 SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL-----HLPVQSGSDRI 302
            +L+  + E+   + +  +    R            +  LM         L  +   D +
Sbjct: 336 EELVKRMHEVFAPLGVNVSLPSLRVN-----HQLRSVPKLMKGWRRAGMTLAPEVARDDM 390

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPD--IAISSDFIVGFPGETDDDFRATMDLVDKI 357
              + +         +I+  R    +    +   F+ G PGE   D    +DL + I
Sbjct: 391 RTQIRKPIKND---DLIEGCREAFKEGMSHVKLYFLCGLPGERAADLDGIVDLAEAI 444


>gi|167750800|ref|ZP_02422927.1| hypothetical protein EUBSIR_01782 [Eubacterium siraeum DSM 15702]
 gi|167656235|gb|EDS00365.1| hypothetical protein EUBSIR_01782 [Eubacterium siraeum DSM 15702]
          Length = 636

 Score = 54.2 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 51/314 (16%), Positives = 99/314 (31%), Gaps = 52/314 (16%)

Query: 112 AEGEEILRRSPIVNVVVGPQTYYRLPEL-LERARFGKRVVDTDYSVEDKFERLSIVDGGY 170
           A  +   ++    + V G     R   + L +    + +  +++    +   +      Y
Sbjct: 223 AYAKSCRQQYDEQDEVYGKTMVQRHGNMMLVQNPPQRSLTQSEFDKAYELPYMKAYHPCY 282

Query: 171 NRKRGVTAFLTI------QEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDN-GV 222
            +  GV     +        GC  +C FC +   +G  I +RS   V++EA  L    G 
Sbjct: 283 EKGGGVPGIKEVEFSITHNRGCFGYCNFCSIALHQGRRIQTRSEESVINEAIDLTKKPGF 342

Query: 223 C-EITLLGQNVNAWRGKGLD---------GEKCT--------------FSDLLYSLSEIK 258
              I  +G     +R    D         G+KC               + ++L  +  IK
Sbjct: 343 KGYIHDVGGPTANFRRTSCDKQEKAGLCKGKKCLAPEPCPALKVDHSEYLEMLRKIRSIK 402

Query: 259 GLVR------LRYTTSHP---RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
            + R      +RY         +    L++ H     +   L +  +  S+++L  M + 
Sbjct: 403 NVKRVFIRSGIRYDYMMKDKNDEFFKELVEHH-----VSGQLKVAPEHASNKVLDLMGKP 457

Query: 310 HTAYEYRQIIDRIRSVRPDIA----ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           H    Y     +      +      +    +   PG T  +       + K         
Sbjct: 458 H-IEVYEDFEKKFYKYTKECGKEQYLVPYLMSSHPGCTIKEAVELAVFLKKHNIRPEQVQ 516

Query: 366 KYSPRLGTPGSNML 379
            + P  GT  + M 
Sbjct: 517 DFYPTPGTISTAMY 530


>gi|146295548|ref|YP_001179319.1| biotin synthase [Caldicellulosiruptor saccharolyticus DSM 8903]
 gi|145409124|gb|ABP66128.1| iron-only hydrogenase maturation protein HydE [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 358

 Score = 54.2 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 33/256 (12%), Positives = 87/256 (33%), Gaps = 27/256 (10%)

Query: 131 QTYYRLPELLERARFGKRVV--DTDYSVEDKFERLSIVDGGYNRKRG--------VTAFL 180
           +   ++ E+L++A     +   +  + +  + E   ++    +R R         +   +
Sbjct: 3   EEKMKVKEILDKAYNEHHLTKDEIKFLLNSEGEEKELLFEYADRVRKEYVGDDVYLRGLI 62

Query: 181 TIQEGCDKFCTFCVVPYTRGIEISRSL--SQVVDEARKLIDNGVCEITLLGQNVNAWRGK 238
                C   C +C +  +        +   ++V+ A++  D G   + L         G+
Sbjct: 63  EFSSYCKNDCFYCGLRRSNKEAQRYRMQEDEIVEVAKRAYDMGYRTVVLQS-------GE 115

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
                K     ++  + E   +           +      +A  D         +  ++ 
Sbjct: 116 DPYYTKDKVCSIIKKIKEEVDVAITLSIGERSYEEYKAFREAGADR------YLMRFETS 169

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           +  + +  +   +     + +  I+S+     + + F++G PG+T DD    + LV ++ 
Sbjct: 170 NRELYQKYHPGMSFENRIECLRWIKSL--GYELGTGFLIGLPGQTIDDLANDILLVYELD 227

Query: 359 YAQAFSFKYSPRLGTP 374
                   + P   TP
Sbjct: 228 SDMIGIGPFIPHPHTP 243


>gi|322834537|ref|YP_004214564.1| Radical SAM domain protein [Rahnella sp. Y9602]
 gi|321169738|gb|ADW75437.1| Radical SAM domain protein [Rahnella sp. Y9602]
          Length = 724

 Score = 54.2 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 54/264 (20%), Positives = 90/264 (34%), Gaps = 45/264 (17%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDNGVCEITLLGQ-------- 230
           + I  GC   C FC +    G  I SRS + +V E  ++ DN      ++          
Sbjct: 377 INIMRGCYGGCAFCSITEHEGRIIQSRSEASIVREIEEIRDNVPGFTGVISDLGGPTANM 436

Query: 231 ----------NVNAWRGKGLDGEKCTFSD--------LLYSLSEIKGLVRLRYTTSHPRD 272
                       +  R   +  E CT  D        L      +KG+ ++   +    D
Sbjct: 437 YMLRCQSPKAEQSCRRASCVYPEICTHMDTNHEPTINLYRRTRSLKGIKKILIASGVRYD 496

Query: 273 MSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR--QIIDRI-RSVRP 327
           ++    +   +L    +  YL +  +      L  M +      YR  ++ D   +    
Sbjct: 497 LAVEDPRYIKELAEHHVGGYLKIAPEHTEAGPLSKMMKPGMGSYYRFKELFDSYSKQAGK 556

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGY--AQAFSFKYSPR-----LGTPGSNMLE 380
           +  +   FI   PG   +D       + K  +   Q  +F  SP      +   G N L 
Sbjct: 557 EQYLIPYFISAHPGTRTEDMINLALWLKKNRFRLDQVQNFYPSPLASATTMYYSGKNPLG 616

Query: 381 QVD---ENV---KAERLLCLQKKL 398
           +VD   E+V   K +R   L K L
Sbjct: 617 KVDYKSEDVVVPKGDRQRRLHKAL 640


>gi|224368675|ref|YP_002602837.1| radical SAM domain protein (Fe-S oxidoreductase) [Desulfobacterium
           autotrophicum HRM2]
 gi|223691391|gb|ACN14674.1| radical SAM domain protein (Fe-S oxidoreductase) [Desulfobacterium
           autotrophicum HRM2]
          Length = 443

 Score = 54.2 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 56/285 (19%), Positives = 106/285 (37%), Gaps = 37/285 (12%)

Query: 114 GEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGG---- 169
           GE+I  R    ++  G      +P +L R   G  +V+         + L  +D      
Sbjct: 130 GEQIFPRLFEPDLDPGN-----IPGILWRNTAG--IVENPMGPMIAMDTLPEIDVNAFSP 182

Query: 170 --YNRKRGVTAFLTIQ--EGCDKFCTFCVVPYTRG-IEISRSLSQVVDEARKLIDN-GVC 223
             Y +     A + I+   GCD +C +C+ P+  G     RS S++VDE   L    G+ 
Sbjct: 183 LSYTQGNAYIAAMGIEGKRGCDLWCGYCLYPFLGGCTMRLRSPSRIVDEMASLNQQFGIK 242

Query: 224 EITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGD 283
                   VN  +       +    +L+    ++      R        ++   ++    
Sbjct: 243 LFHFTDSVVNRPQHHF----EALCQELVRRNLDLTWTGFFR-----ENSLTRENLELAQR 293

Query: 284 LDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR-SVRPDIAISSDFIVGFPGE 342
              +  Y      S +D+ LK +N++ T      + D  R +    I     F++  PGE
Sbjct: 294 AGCVAVYF--SGDSLTDQGLKLLNKQMTRQ---DLFDAARLTAENGILTMCHFLLNLPGE 348

Query: 343 TDDDF---RATMDLVDKI--GYAQAFSFKYSPRLGTPGSNMLEQV 382
            D +    R T+D + +I        +  ++     PG+ M +++
Sbjct: 349 GDQERIQTRETLDRILEIHARAGNLGAVIFNHVRLYPGAPMTKRL 393


>gi|220918867|ref|YP_002494171.1| Radical SAM domain protein [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219956721|gb|ACL67105.1| Radical SAM domain protein [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 589

 Score = 54.2 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 65/166 (39%), Gaps = 17/166 (10%)

Query: 182 IQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD 241
           +  GC   C FC   + +       L ++  E R+ I  G   I L+G + + + G    
Sbjct: 244 VARGCLWGCRFCAAGFVQRPYREVDLERLRAEVREGIARGQR-IGLIGPDTSDYTG---- 298

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
                   L   + E  G      ++     ++  L +   +       + +  ++G+++
Sbjct: 299 -----LDALTCFIGEQGGTFSP--SSLRVDAITGPLARRMAEGGE--RSITIAPEAGTEK 349

Query: 302 ILKSMNRRHTAYEYRQIID-RIRSVRPDIAISSDFIVGFPGETDDD 346
           + + +N+  T  +  Q  +  +      + +   F+ G PGETDDD
Sbjct: 350 MRRVINKDFTDDQIVQAAENALSQGMQHVKMY--FMCGLPGETDDD 393


>gi|33864061|ref|NP_895621.1| Fe-S oxidoreductase [Prochlorococcus marinus str. MIT 9313]
 gi|33635645|emb|CAE21969.1| conserved hypothetical protein [Prochlorococcus marinus str. MIT
           9313]
          Length = 518

 Score = 54.2 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 32/204 (15%), Positives = 60/204 (29%), Gaps = 12/204 (5%)

Query: 158 DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR-SLSQVVDEARK 216
           D    +      Y         +  + GC   C +CV     G ++    + +VV E R+
Sbjct: 212 DYISSIWPQLNWYLEGGDFYVGVQTKRGCPHNCCYCVYTVVEGKQVRLNPVKEVVAEMRQ 271

Query: 217 LIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDC 276
           L D GV             R    D +    +     L+ I              ++   
Sbjct: 272 LYDRGVRGFWFTDAQFIPARRYIEDAKNLLTAIQAEGLNGI-----RWAAYIRADNLDAE 326

Query: 277 LIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFI 336
           L +        M Y  + + SGS  +++ M   +      +    +  VR          
Sbjct: 327 LAELMVATG--MSYFEIGITSGSQELVRKMRMGYNLRTVLENCRLL--VRAGFRQHVSVN 382

Query: 337 VGFPG--ETDDDFRATMDLVDKIG 358
             F    E  +  R ++    ++ 
Sbjct: 383 YSFNVIDERPETIRQSIAYHRELE 406


>gi|15965205|ref|NP_385558.1| lipoyl synthase [Sinorhizobium meliloti 1021]
 gi|307309219|ref|ZP_07588890.1| lipoic acid synthetase [Sinorhizobium meliloti BL225C]
 gi|22001775|sp|Q92Q94|LIPA_RHIME RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|15074385|emb|CAC46031.1| Probable lipoic acid synthetase [Sinorhizobium meliloti 1021]
 gi|306900365|gb|EFN30981.1| lipoic acid synthetase [Sinorhizobium meliloti BL225C]
          Length = 322

 Score = 54.2 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 77/220 (35%), Gaps = 11/220 (5%)

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
           R +   + +    E     + G    +    F+ + E C + C FC V    G   +  L
Sbjct: 49  RSIVKSHKLVTVCEEAGCPNIGECWDKKHATFMIMGEICTRACAFCNV--ATGKPNALDL 106

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
            +  + A+ +   G+  + +   +    R    DG    F  +++++ E      +   T
Sbjct: 107 DEPANVAKAVKQMGLSHVVITSVD----RDDLDDGGAEHFEKVIFAIREASPETTIEILT 162

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
                    L +       ++ +    V   S+ +      R+  +   +++ R++ + P
Sbjct: 163 PDFLRKPGALERVVAAKPDVINHNLETV--PSNYLTVRPGARY--FHSIRLLQRVKELDP 218

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
            +   S  +VG  GE  ++    MD +           +Y
Sbjct: 219 TMFTKSGIMVGL-GEERNEVLQLMDDLRTADVDFLTIGQY 257


>gi|126462724|ref|YP_001043838.1| coproporphyrinogen III oxidase [Rhodobacter sphaeroides ATCC 17029]
 gi|332558763|ref|ZP_08413085.1| coproporphyrinogen III oxidase [Rhodobacter sphaeroides WS8N]
 gi|126104388|gb|ABN77066.1| oxygen-independent coproporphyrinogen III oxidase [Rhodobacter
           sphaeroides ATCC 17029]
 gi|332276475|gb|EGJ21790.1| coproporphyrinogen III oxidase [Rhodobacter sphaeroides WS8N]
          Length = 452

 Score = 54.2 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 32/210 (15%), Positives = 76/210 (36%), Gaps = 20/210 (9%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA--WRGKGLDGE 243
           C++ C FC    T+G        Q +      +   + E+ L+ Q++ A    G+   G 
Sbjct: 60  CERLCWFCA-CRTQGT-------QTLAPVEAYVGTLLQELELVKQHLPAGVKAGRLHWGG 111

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL-------MPYLHLPVQ 296
                     + ++   ++     +   + S  +     D   +       M    + +Q
Sbjct: 112 GTPTILSPELIHKLAQAIKAVIPFAEDYEFSVEIDPMMVDEPKIRALSEEGMNRASIGIQ 171

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
             +D +  ++ R       +  ++ +R      ++++D + G P +  +   AT+D V  
Sbjct: 172 DFTDIVQNAIGREQPFENTKACVETLRRYGVH-SLNTDLVYGLPHQNRESLAATIDKVLS 230

Query: 357 IGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           +   +   F Y+       +   + +DE V
Sbjct: 231 LRPDRVAIFGYAHVP--WMAKRQKLIDETV 258


>gi|119386903|ref|YP_917958.1| radical SAM domain-containing protein [Paracoccus denitrificans
           PD1222]
 gi|119377498|gb|ABL72262.1| Radical SAM domain protein [Paracoccus denitrificans PD1222]
          Length = 620

 Score = 54.2 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 52/307 (16%), Positives = 106/307 (34%), Gaps = 45/307 (14%)

Query: 78  EKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVV--------- 128
            +  + L   R LK   + +   ++   A C  +  G +++R  P ++ V          
Sbjct: 137 HQTCACLALARRLKA--LPDPPVVVFGGANCEGE-MGWQMIRSFPWIDHVCSGEADISFP 193

Query: 129 -------GPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTA--- 178
                  G +    +P +L+R      +     +  D+       D   +  +   A   
Sbjct: 194 LLLDRLSGRREPGPIPGVLDRGAAEAPLRSQGVTQMDRLPYPDFDDYFLHLAQSPLAGQF 253

Query: 179 ----FLTIQEGC----DKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQ 230
                     GC       CTFC +        S+S  +  DE    +        +   
Sbjct: 254 QGHLVFETSRGCWWGAKHHCTFCGLNGDTMAFRSKSPDRAFDEI-TWLAQRHKASRV--- 309

Query: 231 NVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY 290
                    LD +  T   L   L+E      L        ++    ++        +  
Sbjct: 310 ---GCVDNILDMKYVT--TLFPRLAEAG--YHLDLFYEVKSNLRLDQLRQMRAGG--VTQ 360

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
           +   ++S SDR+LK M++  T ++  Q++   R +   I ++ + + GFPGE  +++ A 
Sbjct: 361 IQPGIESFSDRVLKLMDKGCTGFQNIQLMRWCREL--GIEVAWNVLSGFPGEEPEEYAAM 418

Query: 351 MDLVDKI 357
             L+ ++
Sbjct: 419 ARLIPQL 425


>gi|295394832|ref|ZP_06805047.1| coproporphyrinogen dehydrogenase [Brevibacterium mcbrellneri ATCC
           49030]
 gi|294972428|gb|EFG48288.1| coproporphyrinogen dehydrogenase [Brevibacterium mcbrellneri ATCC
           49030]
          Length = 402

 Score = 54.2 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 39/230 (16%), Positives = 81/230 (35%), Gaps = 24/230 (10%)

Query: 164 SIVDGGYNRKRGVTAFLTIQEGCDKFCTFC------VVPYTRGIEISRSLSQVVDEARKL 217
           S+     +  R + A++ +   C   C +C           +G        Q+  E    
Sbjct: 15  SLPASALDSSRTLAAYVHVPY-CRVRCGYCDFNTYTASELGKGANREDYPDQIASEIDLA 73

Query: 218 IDNGVCEITLLGQ----NVNAWRGKGLDGEKCT-FSDLLYSLSEIKGLVRLRYTTSHPRD 272
                  + +LG+    N   + G        +    +L  L  + G+V     T+    
Sbjct: 74  -------LRVLGEPRALNTVFFGGGTPTLLPASVLGGVLSQLKSVFGVVTGAEVTTEANP 126

Query: 273 MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAIS 332
            +  L             + + +QS  D +L +++R H      +++  ++     + +S
Sbjct: 127 DTLSLEYLSELARSGFTRVSVGMQSAVDHVLHTLDRTHDPARIPEVVQWVKDA--GLQVS 184

Query: 333 SDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
            D I G PGE+ DD++ ++++          ++      GT    M  QV
Sbjct: 185 LDLIYGTPGESLDDWKRSVEVALACEPDHISAYSLIVEPGT---KMGAQV 231


>gi|170754844|ref|YP_001783218.1| biotin synthase [Clostridium botulinum B1 str. Okra]
 gi|169120056|gb|ACA43892.1| radical SAM domain protein [Clostridium botulinum B1 str. Okra]
          Length = 348

 Score = 54.2 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 30/226 (13%), Positives = 69/226 (30%), Gaps = 16/226 (7%)

Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI-EISR-SL 207
           +D D      F+        YN K  +   +     C   C +C +       E  R S 
Sbjct: 26  IDKDSKKYLIFKSHETRLKHYNNKVYLRGLIEFTNYCKNSCLYCGISCRNNNAERYRLSK 85

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
            +++    K    G     L G     +    +     +   L    +    +    Y  
Sbjct: 86  EEILKCCGKGYSLGYRTFVLQGGEDPYYTDNKIIDIIKSIKKLFPDCAVTLSIGEKSY-- 143

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
               +       A  D         L  ++ S  + + ++   +    R  +  ++ +  
Sbjct: 144 ----ETYKKFYDAGADR------YLLRHETASKNLYEKLHPDMSFENRRSCLKNLKKI-- 191

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
              + + F++G P +T++D+   +  + ++         + P   T
Sbjct: 192 GYQVGAGFMIGLPNQTNEDYVNDLIFLKELKPHMVGIGPFVPHKDT 237


>gi|28210698|ref|NP_781642.1| magnesium-protoporphyrin IX monomethyl ester oxidative cyclase
           [Clostridium tetani E88]
 gi|28203136|gb|AAO35579.1| magnesium-protoporphyrin IX monomethyl ester oxidative cyclase
           [Clostridium tetani E88]
          Length = 576

 Score = 54.2 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 39/288 (13%), Positives = 96/288 (33%), Gaps = 27/288 (9%)

Query: 84  LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLP---ELL 140
           +  I+ +         ++ +++ G     +  + L+      ++ G            LL
Sbjct: 68  ISYIKKVSRLIKLINPNIKIILGGPEVSFDARDYLKEEYCDFLIEGEGEETYRELIAYLL 127

Query: 141 ERARFGKRVVDTD--YSVEDK------------FERLSIVDGGYNRKRGVTAFLTIQEGC 186
           E+ +  + + +    Y +ED                +               +     GC
Sbjct: 128 EKNKEKEHINNIKALYYIEDNEIIYTGKRDLMDMNDIVFPYEELEELNNKIIYYEASRGC 187

Query: 187 DKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT 246
              C +C+     G     ++++V  E +  ID  V  +  + +  N       +  K  
Sbjct: 188 PFNCKYCLSSTVHG-LRFLNINRVKKELQFFIDKKVKLVKFVDRTFNCDHEFAYEIWKFI 246

Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306
                 ++          +       +++  I         +    + VQS +  +LK++
Sbjct: 247 IEKSPENI--------TFHFEISADLLTEKEINLLSKAKEGLIQFEVGVQSTNKEVLKNI 298

Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           NR     E ++ ++ +  ++ +I    D I G PGE  + F+ + + +
Sbjct: 299 NRDADFLEIKEKVEELLKIK-NINQHLDLIAGLPGEDYNSFKNSFNDL 345


>gi|301063574|ref|ZP_07204091.1| radical SAM domain protein [delta proteobacterium NaphS2]
 gi|300442306|gb|EFK06554.1| radical SAM domain protein [delta proteobacterium NaphS2]
          Length = 291

 Score = 54.2 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 35/193 (18%), Positives = 66/193 (34%), Gaps = 10/193 (5%)

Query: 185 GCDKF-CTFCVVPYTRGIEISRSLSQV---VDEARKLIDNGVCEITLLGQNVNAWRGKGL 240
           GC    CTFC+V         RS+  +   + EAR+   + V  +     N  A   + L
Sbjct: 24  GCPHNKCTFCMVYKKGPRFRVRSVKGIEADLREARRSYGSRVQTLFFPAGNTIAMPVEDL 83

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300
                       SL     L R+    S        L          +  +H+ ++SG D
Sbjct: 84  ----IRICSCARSL--FPELKRITVYGSSQYIHRKGLKNLARLKKAGLSRIHVGLESGDD 137

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
            +L+ + +   A E  +     R    ++++     +G    T    + T  +++ +   
Sbjct: 138 VVLRKIKKGTHAEEQIEAGLWAREAGIELSVYLLLGIGGRERTLQHAQNTASVLNALNPD 197

Query: 361 QAFSFKYSPRLGT 373
                 + P+  T
Sbjct: 198 FIRVRTFLPKQNT 210


>gi|257126657|ref|YP_003164771.1| coproporphyrinogen III oxidase [Leptotrichia buccalis C-1013-b]
 gi|257050596|gb|ACV39780.1| Coproporphyrinogen dehydrogenase [Leptotrichia buccalis C-1013-b]
          Length = 507

 Score = 54.2 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 42/212 (19%), Positives = 76/212 (35%), Gaps = 24/212 (11%)

Query: 167 DGGYNRKRGVTAFLTIQEGCDKFCTFCVVP--YTRGIEISRSLSQVVDEARKLIDNGVCE 224
              Y  K  +  ++ I   C   C++C  P    RG           ++  + I++   E
Sbjct: 172 QEPYLDKETIGIYIGIAF-CPTKCSYCSFPAYLLRGKY--------AEQYDEYIESIYHE 222

Query: 225 ITLLGQNV-------NAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCL 277
           I  +GQ         N     G      T  ++   L  +K    L Y      +     
Sbjct: 223 IREIGQLTQELDLKINTIYIGGGTPSILTAEEIDELLETVKENYNLDYLKEFTFEAGRID 282

Query: 278 IKAHGDLDVLMPY----LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
                 L ++  Y    + +  QS +++ LK +NR H   ++  +    +++   + I+ 
Sbjct: 283 TLNEEKLTIIKSYGINKISINPQSFNEKTLKLVNRYHNREQFDNVYKLAKNL--GLEINM 340

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           D I+G P ET +D   TMD + K         
Sbjct: 341 DLILGLPRETTEDILYTMDEISKYNMENLTIH 372


>gi|238064200|ref|ZP_04608909.1| radical SAM domain-containing protein [Micromonospora sp. ATCC
           39149]
 gi|237886011|gb|EEP74839.1| radical SAM domain-containing protein [Micromonospora sp. ATCC
           39149]
          Length = 652

 Score = 54.2 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 73/421 (17%), Positives = 147/421 (34%), Gaps = 99/421 (23%)

Query: 78  EKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLP 137
           ++  + L   +++K          +   A C  +  G  + R  P V++VV  +     P
Sbjct: 141 QQNTAALAAAKHVKRLDPTI--RTVFGGANCDGEQ-GAALHRNFPFVDLVVRGEGEAAFP 197

Query: 138 ELLER----------------------------ARFGKRVVDTDYSVEDKFERLSIVDGG 169
            LL                              A  G+R+ +   +       +   D  
Sbjct: 198 RLLAALAGGDPARPPVPPGAAAGLAGVEGLCWTAPDGRRIANPMSTKPLPPAEIVTPDYA 257

Query: 170 -------YNRKRGVTAFLTI---QEGC----DKFCTFCVVPYTRGIEISRSLSQVVDEAR 215
                   +R R       +     GC       CTFC +  +     S+S S+  DE  
Sbjct: 258 GYFERLAASRARNWVEPKLVVEGARGCWWGEKHHCTFCGLNGSFMEFRSKSPSRFYDEIV 317

Query: 216 KLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSD 275
            L +        +  N+          +    + LL  L+E    +RL+Y      +M  
Sbjct: 318 SLAERHQVLDMFVVDNI---------LDMGYVTSLLPRLAESDYDLRLQYEI--KSNMKG 366

Query: 276 CLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDF 335
             ++A  D  ++   +   +++ S R+LK M++  T     +++    +    + ++ ++
Sbjct: 367 AQVQALADAGLV--SVQPGIENLSSRVLKIMDKGVTGCLNVRMLRD--AETSGVTVAWNY 422

Query: 336 IVGFPGETDDDFRATMDLVDKIGY-------AQAFSFKYSP---RLGT------PG---- 375
           + GFPGETD+D++  +D    + +       ++    ++SP   R         P     
Sbjct: 423 LYGFPGETDEDYQTILDQFPALHHLAPAGGSSRIAIERFSPYFNRPELGFGDLRPAGQYR 482

Query: 376 --SNMLE----------QVDEN-VKAERLLCLQKKLREQQVSFNDAC-----VGQIIEVL 417
              ++ E           V E  + AE    L++ + E Q  +  +      +G+ I VL
Sbjct: 483 LNYDLPESELMDLAYIFDVPEQGIGAELAARLEEAVTEWQHEYARSQLTHHDLGEEI-VL 541

Query: 418 I 418
           +
Sbjct: 542 V 542


>gi|172046633|sp|Q3ARP5|LIPA_CHLCH RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
          Length = 293

 Score = 54.2 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 36/200 (18%), Positives = 60/200 (30%), Gaps = 23/200 (11%)

Query: 174 RGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL----SQVVDEARKLIDNGVCEITLLG 229
           RG   FL +   C + CTFC V        S        +    A  +    +    L  
Sbjct: 52  RGTATFLLLGNTCTRSCTFCAVSKA-----SAPPAPDSDEPQKIAEAIASMKLKHAVLTS 106

Query: 230 QNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMP 289
                 R    DG    +   + ++ +    V L       +     L         ++ 
Sbjct: 107 VT----RDDLPDGGANHWIATMQAIRQRTPNVSLECLIPDFQHKKAALDSVMQATPDVLN 162

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR--SVRPDIAISSDFIVGFPGETDDDF 347
           +        S   L S  R      YR  ++ +R    +  +A  S  +VG  GE   + 
Sbjct: 163 HNI-----ESVPSLYSTVRP--QANYRASLELLRYAKEQHGLATKSGLMVGM-GEERHEV 214

Query: 348 RATMDLVDKIGYAQAFSFKY 367
            AT+  +   G       +Y
Sbjct: 215 EATLHDLAAHGCDMVTIGQY 234


>gi|167400644|ref|ZP_02306153.1| radical SAM protein, TIGR01212 family [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167050012|gb|EDR61420.1| radical SAM protein, TIGR01212 family [Yersinia pestis biovar
           Antiqua str. UG05-0454]
          Length = 311

 Score = 54.2 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 2/88 (2%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +L L +Q+ +D+ LK +NR H    Y+Q   R R+    + +    IVG PGE     R 
Sbjct: 141 WLELGLQTANDKTLKRINRGHDFACYQQTARRARAR--GLKVCCHLIVGLPGEDRAQGRE 198

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
           T++ V   G             G+  + 
Sbjct: 199 TLEKVVTTGVDGIKLHPLHIVEGSTMAK 226


>gi|197124088|ref|YP_002136039.1| radical SAM protein [Anaeromyxobacter sp. K]
 gi|196173937|gb|ACG74910.1| Radical SAM domain protein [Anaeromyxobacter sp. K]
          Length = 589

 Score = 54.2 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 65/166 (39%), Gaps = 17/166 (10%)

Query: 182 IQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD 241
           +  GC   C FC   + +       L ++  E R+ I  G   I L+G + + + G    
Sbjct: 244 VARGCLWGCRFCAAGFVQRPYREVDLERLRAEVREGIARGQR-IGLIGPDTSDYTG---- 298

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
                   L   + E  G      ++     ++  L +   +       + +  ++G+++
Sbjct: 299 -----LDALTCFIGEQGGTFSP--SSLRVDAITAPLARRMAEGGE--RSITIAPEAGTEK 349

Query: 302 ILKSMNRRHTAYEYRQIID-RIRSVRPDIAISSDFIVGFPGETDDD 346
           + + +N+  T  +  Q  +  +      + +   F+ G PGETDDD
Sbjct: 350 MRRVINKDFTDDQIVQAAENALSQGMQHVKMY--FMCGLPGETDDD 393


>gi|149923611|ref|ZP_01912009.1| hypothetical protein PPSIR1_38941 [Plesiocystis pacifica SIR-1]
 gi|149815525|gb|EDM75060.1| hypothetical protein PPSIR1_38941 [Plesiocystis pacifica SIR-1]
          Length = 606

 Score = 54.2 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 41/251 (16%), Positives = 91/251 (36%), Gaps = 36/251 (14%)

Query: 124 VNVVVGPQTYYRLPELL-----------ERARFGKRVVDTDY----SVEDKFERLSIVDG 168
           V+ +   ++    P  L           +R   G+  +D +     S +D FE+ + +  
Sbjct: 180 VDFIFSGESEATFPAFLSEVLGRGHRPEQRVFHGQPCLDLEALPLTSFDDFFEQRAALFP 239

Query: 169 GYNRKRGVTAFLTIQEGC----DKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVC 223
               +     + T   GC       CTFC +         +S  +V  +   L       
Sbjct: 240 DEPSETVKIPYET-SRGCWWGQKHHCTFCGLNGGGMGYREKSADKVFRDLNALHQRYAYD 298

Query: 224 EITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGD 283
           E+ ++   +     K           +  +  E+    R+ Y           L KA   
Sbjct: 299 EVMMVDNIMPHGYFKSF---------VPRAAEELPPGTRIFYEQKANIT----LRKAMAL 345

Query: 284 LDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGET 343
               + ++   ++S S  +L+ M++   A +   ++   R+V   + +  + +V FPG+ 
Sbjct: 346 KRAGIDHIQPGIESLSTALLRRMDKGIKASQNIALMRYARAV--GLQLVWNLLVRFPGDR 403

Query: 344 DDDFRATMDLV 354
           ++D+   ++L+
Sbjct: 404 EEDYEGMIELI 414


>gi|78189035|ref|YP_379373.1| lipoyl synthase [Chlorobium chlorochromatii CaD3]
 gi|78171234|gb|ABB28330.1| Lipoate synthase [Chlorobium chlorochromatii CaD3]
          Length = 300

 Score = 54.2 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 36/200 (18%), Positives = 60/200 (30%), Gaps = 23/200 (11%)

Query: 174 RGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL----SQVVDEARKLIDNGVCEITLLG 229
           RG   FL +   C + CTFC V        S        +    A  +    +    L  
Sbjct: 59  RGTATFLLLGNTCTRSCTFCAVSKA-----SAPPAPDSDEPQKIAEAIASMKLKHAVLTS 113

Query: 230 QNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMP 289
                 R    DG    +   + ++ +    V L       +     L         ++ 
Sbjct: 114 VT----RDDLPDGGANHWIATMQAIRQRTPNVSLECLIPDFQHKKAALDSVMQATPDVLN 169

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR--SVRPDIAISSDFIVGFPGETDDDF 347
           +        S   L S  R      YR  ++ +R    +  +A  S  +VG  GE   + 
Sbjct: 170 HNI-----ESVPSLYSTVRP--QANYRASLELLRYAKEQHGLATKSGLMVGM-GEERHEV 221

Query: 348 RATMDLVDKIGYAQAFSFKY 367
            AT+  +   G       +Y
Sbjct: 222 EATLHDLAAHGCDMVTIGQY 241


>gi|322716960|gb|EFZ08531.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
          Length = 485

 Score = 54.2 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 40/248 (16%), Positives = 87/248 (35%), Gaps = 20/248 (8%)

Query: 173 KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEI--TLLGQ 230
           +R ++ ++ I   C K C FC        +  +   Q +D   + I +         + Q
Sbjct: 78  ERPLSLYVHIPF-CHKLCYFCGCNKIVTRQQHK-ADQYLDALEQEIRHRAPLFADRHVSQ 135

Query: 231 NVNAWRGKGLDGEKCTFSDLLYSLSE-----IKGLVRLRYTTSHPRDMSDCLIKAHGDLD 285
            ++   G      K   S L+  L E         + +      PR++   ++       
Sbjct: 136 -LHWGGGTPTYLNKAQISRLMTLLRENFHFNTDAEISIEV---DPREIDLDVLDHLRAEG 191

Query: 286 VLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS-DFIVGFPGETD 344
                L + VQ  +  + + +NR         +++  R +      ++ D I G P +T 
Sbjct: 192 --FNRLSMGVQDFNKEVQRLVNREQDEEFIFALLNHARDI--GFTSTNIDLIYGLPKQTP 247

Query: 345 DDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQV 403
           + F  T+  V ++   +   F Y+       +   ++  D     ++L  LQ+ +     
Sbjct: 248 ESFAFTLKRVTELNPDRLSVFNYAHLPTLFAAQRKIKDADLPSAQQKLDILQETIVSLTQ 307

Query: 404 SFNDACVG 411
           +     +G
Sbjct: 308 AGYQ-FIG 314


>gi|318060140|ref|ZP_07978863.1| hypothetical protein SSA3_19510 [Streptomyces sp. SA3_actG]
 gi|318078501|ref|ZP_07985833.1| hypothetical protein SSA3_17734 [Streptomyces sp. SA3_actF]
 gi|333027123|ref|ZP_08455187.1| putative radical SAM domain-containing protein [Streptomyces sp.
           Tu6071]
 gi|332746975|gb|EGJ77416.1| putative radical SAM domain-containing protein [Streptomyces sp.
           Tu6071]
          Length = 645

 Score = 54.2 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 70/423 (16%), Positives = 125/423 (29%), Gaps = 73/423 (17%)

Query: 48  FFSQGYERVNSMDD-ADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVV-- 104
               G     + +  AD I    C +     + V      +R  K   +  G D +++  
Sbjct: 148 LVVAGGHAAFNPEPVADFI---DCAVIGDGEQAVLEITDVVRAWKAEGMPGGRDEVLLRL 204

Query: 105 --VAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFER 162
               G       +        +   V  ++                V+D D     K   
Sbjct: 205 AKTGGVYVPRFYDVEYLPDGRIARTVPNRSGVPWR------VSKHTVMDLDEWPYPKQPL 258

Query: 163 LSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN-G 221
           + + +  + R       + I  GC + C FC           RS++ + D   K +   G
Sbjct: 259 VPLAETVHERMS-----VEIFRGCTRGCRFCQAGMITRPVRERSITGIGDMVEKGLRATG 313

Query: 222 VCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAH 281
             E+ LL     +       G+        Y   +I     L   ++     +  L    
Sbjct: 314 FEEVGLLS---LSSADHSEIGDVAKGLADRYEEEKIG----LSLPSTRVDAFNVDLANEL 366

Query: 282 GDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR-----IRSVRPDIAISSDFI 336
                    L    + GS+R+ K +N+  +  +  + +        R V+        F+
Sbjct: 367 TRNGR-RSGLTFAPEGGSERMRKVINKMVSEEDLIRTVSTAYGNGWRQVK------LYFM 419

Query: 337 VGFPGETDDDFRATMDLVDKI---------GYA---QAFSFKYSPRLGTPGSNMLEQVDE 384
            G P ETD+D     D+  ++                     + P+  TP      Q+  
Sbjct: 420 CGLPTETDEDVLQIADMATRVIAEGRAASGRNDIRATVSIGGFVPKPHTP-FQWAPQLSP 478

Query: 385 NVKAERLLCLQKKLR---------------------EQQVSFNDACVGQIIEVLIEKHGK 423
                RL  L+ K+R                     E  +S  D  VG +I  + E  G+
Sbjct: 479 EDTDARLAKLRDKIRGDKKYGRSIGFRYHDGKPGIVEGLLSRGDRRVGAVIRAVYEDGGR 538

Query: 424 EKG 426
             G
Sbjct: 539 FDG 541


>gi|299065230|emb|CBJ36396.1| Coproporphyrinogen III oxidase [Ralstonia solanacearum CMR15]
          Length = 488

 Score = 54.2 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 33/195 (16%), Positives = 70/195 (35%), Gaps = 18/195 (9%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG--LDGE 243
           C   C +C        + +RS   +   AR++         ++  ++   R       G 
Sbjct: 85  CANLCYYCGCNKVVTKDHTRSARYIGALAREMA--------MVAGHIGPLRQATQLHWGG 136

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL-------MPYLHLPVQ 296
                     + ++    R  +  +   ++S  L   H     L            L +Q
Sbjct: 137 GTPTFLSHDEMRDVMAATREHFALTSDAEISVELDPRHASDATLEVLASLGFNRASLGIQ 196

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
                + ++++R  +  + RQ++D  R +  + +IS D I G P +    F AT+D V +
Sbjct: 197 DFDADVQRAIHRVQSVEQTRQVVDSARRLGFE-SISFDLIYGLPHQHTATFNATLDRVLE 255

Query: 357 IGYAQAFSFKYSPRL 371
           +   +   + Y+   
Sbjct: 256 MAPDRLSVYSYAHLP 270


>gi|242003989|ref|XP_002436243.1| lipoic acid synthase, putative [Ixodes scapularis]
 gi|215499579|gb|EEC09073.1| lipoic acid synthase, putative [Ixodes scapularis]
          Length = 245

 Score = 54.2 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 32/184 (17%), Positives = 66/184 (35%), Gaps = 11/184 (5%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V   R         + ++ A  + + G+  I +   +    R    DG   
Sbjct: 7   CTRACRFCSVKTAR-HPPLPDPDEPLNTAEAIAEWGLDYIVITSVD----RDDLPDGGSN 61

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGD-LDVLMPYLHLPVQSGSDRILK 304
            F++ +  +   K  + +   T         + +     LDV    +    +  +     
Sbjct: 62  HFAETVRQIKRRKPSILVECLTPDFAGDMKAVAEVASSGLDVYAHNIETVPELQAHVR-- 119

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
             +RR    +  +++   + V P +   +  ++GF GE+D     TM+ V + G      
Sbjct: 120 --DRRANFEQSLKVLKHAKEVNPKVITKTSLMLGF-GESDSQVMKTMEAVREAGVDCFTL 176

Query: 365 FKYS 368
            +Y 
Sbjct: 177 GQYM 180


>gi|172039281|ref|YP_001805782.1| hypothetical protein cce_4368 [Cyanothece sp. ATCC 51142]
 gi|171700735|gb|ACB53716.1| unknown [Cyanothece sp. ATCC 51142]
          Length = 535

 Score = 54.2 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 54/238 (22%), Positives = 95/238 (39%), Gaps = 24/238 (10%)

Query: 177 TAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR 236
              + +   C + C FC+  Y      + SL   +  A +        I LLG +V    
Sbjct: 223 IYMVEVVRSCPEMCRFCLASYLTLPFRTASLEGSLIPAIEKGLQVTNRIGLLGASVTQH- 281

Query: 237 GKGLDGEKCTFSDLLYSLSEIKGL-VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPV 295
                     F+DLL  L + K   VR+   +     +++ L K     D     + + V
Sbjct: 282 --------PEFNDLLDYLYQPKYEGVRVSIASVRTNTLTEKLAKIL--SDRNTKSVTIAV 331

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI-AISSDFIVGFPGETDDDFRATMDLV 354
           +SGS++I   +N++    E  Q    I +    +  +    +VG P E D+D   T+ ++
Sbjct: 332 ESGSEKIRNIINKKLENEEIIQAA--INAKVGGLKNLKLYGMVGIPEENDEDIEQTIMML 389

Query: 355 DKIGYAQAF---SFKYS---PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFN 406
           + I  A      +F  S   P+  TP   +       +  +RL  LQK+L ++ + F 
Sbjct: 390 ESIKKAAPGLRLTFGCSTFVPKSHTPFQWLG---VNKIAKKRLKYLQKQLSKKGIEFR 444


>gi|58039148|ref|YP_191112.1| SAM superfamily protein [Gluconobacter oxydans 621H]
 gi|58001562|gb|AAW60456.1| Conserved protein of the SAM superfamily [Gluconobacter oxydans
           621H]
          Length = 578

 Score = 54.2 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 36/251 (14%), Positives = 83/251 (33%), Gaps = 32/251 (12%)

Query: 176 VTAFLTIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVCEITLLGQNVNA 234
             A +    GC   CTFC      G    + S   + DE   L + G+  +         
Sbjct: 246 PAASIEFARGCPWDCTFCSAWTFYGRSYRTVSPQVIADELEALKEPGIFIV--------- 296

Query: 235 WRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMP----- 289
                   +   F    + ++    + +      +  +    ++  + ++  +       
Sbjct: 297 --------DDVAFVHQEHGMAIADEIKKRGIKKEYYLETRADVLLRNKEVFKVWSEIGLT 348

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           Y+ + +++  +  LK   +R +     + ++  RS+   + ++ + I   P  T + F A
Sbjct: 349 YIFIGLEAVDEEGLKQFRKRVSLDANFEALEYARSL--GLTVAINIIAD-PSWTRERFEA 405

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQV---SFN 406
                 +I          +P  GT   +   +     +  RL  +Q  +    +    F 
Sbjct: 406 VRQWCLEIP-DIVNISVTTPYPGTEIWHREARR-LTTRDYRLFDIQHAVLPTTLPLPEFY 463

Query: 407 DACVGQIIEVL 417
              V +  +VL
Sbjct: 464 KELV-KTQQVL 473


>gi|33862070|ref|NP_893631.1| lipoyl synthase [Prochlorococcus marinus subsp. pastoris str.
           CCMP1986]
 gi|47115730|sp|Q7UZY1|LIPA1_PROMP RecName: Full=Lipoyl synthase 1; AltName: Full=Lip-syn 1; AltName:
           Full=Lipoate synthase 1; AltName: Full=Lipoic acid
           synthase 1; AltName: Full=Sulfur insertion protein lipA1
 gi|33634288|emb|CAE19973.1| lipoic acid synthetase [Prochlorococcus marinus subsp. pastoris
           str. CCMP1986]
          Length = 297

 Score = 54.2 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 71/220 (32%), Gaps = 11/220 (5%)

Query: 153 DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVD 212
           D  +    +  S  + G     G   FL +  GC + C +C + + R        ++   
Sbjct: 34  DLKLNTVCQEASCPNIGECFASGTATFLIMGPGCTRACPYCDIDFDRSK-RDLDPTEPDR 92

Query: 213 EARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
            A  +    +  + +   N    R    DG    F   +  + +      +         
Sbjct: 93  LAEAVFRLKLKHVVITSVN----RDDLDDGGASQFYKCVSEVRKKSPETTIELLIPDLCG 148

Query: 273 MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAIS 332
               L K       ++ +    +++ S    K +  +       +++ R R   P +   
Sbjct: 149 NWSALEKILDSRPNVLNH---NIETVSALYRK-VRPQGNYQRTLELLKRTREYFPSVYTK 204

Query: 333 SDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY-SPRL 371
           S F++G  GE DD+    +  + K         +Y SP  
Sbjct: 205 SGFMLGL-GEKDDEVLTLLMDLRKNDVDIVTIGQYLSPGP 243


>gi|329903491|ref|ZP_08273508.1| Mg-protoporphyrin IX monomethyl ester oxidative cyclase
           [Oxalobacteraceae bacterium IMCC9480]
 gi|327548333|gb|EGF33020.1| Mg-protoporphyrin IX monomethyl ester oxidative cyclase
           [Oxalobacteraceae bacterium IMCC9480]
          Length = 501

 Score = 54.2 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 33/203 (16%), Positives = 57/203 (28%), Gaps = 20/203 (9%)

Query: 179 FLTIQEGCDKFCTFC-------VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQN 231
           ++    GC   C FC         P+         L   + E  KL   G      + + 
Sbjct: 165 YVEASRGCPFKCEFCLSALDKTAWPFA--------LDGFIAELEKLHARGARLFKFVDRT 216

Query: 232 VNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL 291
            N      L          L  L+         +    P  + D L              
Sbjct: 217 FNLNIKSSLK----IMQFFLDKLAAYPDDPVYAHFEVVPDHLPDALKAGIMQFPPGTLQF 272

Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351
            + +QS +  +   ++R+    +  + I  +     +  +  D I G PGE    F    
Sbjct: 273 EIGIQSFNPDVQALVSRKQDNAKAAENIRWLCEHS-NAHLHVDLIAGLPGEDIASFARGF 331

Query: 352 DLVDKIGYAQAFSFKYSPRLGTP 374
           D +  +   +          GTP
Sbjct: 332 DRLVALQPHEIQFGILKRLRGTP 354


>gi|297539776|ref|YP_003675545.1| lipoic acid synthetase [Methylotenera sp. 301]
 gi|297259123|gb|ADI30968.1| lipoic acid synthetase [Methylotenera sp. 301]
          Length = 316

 Score = 54.2 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 40/249 (16%), Positives = 90/249 (36%), Gaps = 18/249 (7%)

Query: 126 VVVGPQTYYRLPELL-----ERARFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAF 179
           + + P    R PE +     + AR+ + + +  + ++    E  S  + G     G   F
Sbjct: 25  IKIIPMPMLRKPEWIRMKAPDSARYQEIKKILRENNLHTVCEEASCPNIGECFSGGTATF 84

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
           + + + C + C FC V    G  +   +++  + AR +    +  + +   +    R   
Sbjct: 85  MILGDICTRRCPFCDV--AHGKPLPPDVNEPENLARTIAQMKLKYVVITSVD----RDDL 138

Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV-LMPYLHLPVQSG 298
            DG    F D + ++      +++       R   D  ++   +    +M +    +   
Sbjct: 139 KDGGAQHFVDCIRAVRAQSPNIKIEILVPDFRGRLDVAMQILRNAPPDVMNHNLETI--- 195

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
             R+ K            Q++     + PD+   S  ++G  GETD++    M  +    
Sbjct: 196 -PRLYKQARPGSDYQNSLQLLKTFGEMYPDVPTKSGLMLGL-GETDEEILEVMADLRAHN 253

Query: 359 YAQAFSFKY 367
            +     +Y
Sbjct: 254 VSMLTLGQY 262


>gi|297544377|ref|YP_003676679.1| oxygen-independent coproporphyrinogen III oxidase
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
 gi|296842152|gb|ADH60668.1| oxygen-independent coproporphyrinogen III oxidase
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
          Length = 375

 Score = 54.2 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 32/213 (15%), Positives = 72/213 (33%), Gaps = 26/213 (12%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQ-VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK 244
           C + C +C      G          +     ++  N   +  ++   +         G  
Sbjct: 13  CKRKCYYCDFNSYAG--YDYLFEDYIRALLMEIESNSTKDYNVVSVYI---------GGG 61

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL-------MPYLHLPVQS 297
                  Y +  I   V   Y      +++  +       + L       +  + + +Q+
Sbjct: 62  TPNLLPPYYIEVILKSVFKYYKLVDDCEITIEMNPGLITEEKLEIYKVNGINRVSIGLQA 121

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
             +R+LK + R HT  E+ +  + ++    +I I  D +   P +T  +++ T+  V K+
Sbjct: 122 FQNRLLKYIGRIHTIEEFLENYELVKKFFDNINI--DLMYALPTQTFKEWQETLKEVVKL 179

Query: 358 GYAQAFSFKYSPRLGTPGSNMLEQ-----VDEN 385
                 ++       T    + E+     VDE 
Sbjct: 180 QPTHISTYSLILEPNTSFYKLYEKGQLPVVDEE 212


>gi|283796627|ref|ZP_06345780.1| radical SAM domain protein [Clostridium sp. M62/1]
 gi|291076050|gb|EFE13414.1| radical SAM domain protein [Clostridium sp. M62/1]
          Length = 655

 Score = 54.2 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 75/221 (33%), Gaps = 10/221 (4%)

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           + R    +V T  +       +    G          +     GC   C++C+       
Sbjct: 193 KVRAEAEIVATPPAPLLDLNEIPFAYGDLQGLEHRIIYYESSRGCPFSCSYCL-SSIDKS 251

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
              R L  V +E    ++  V ++  + +  N  +         + +   + L    G+ 
Sbjct: 252 VRFRDLELVKEELAFFLEKKVPQVKFVDRTFNCRKSH-------SMAVWQFILENDNGIT 304

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
              +  S      + L         L+  L + VQ+ + R +K + R+      ++ +++
Sbjct: 305 NFHFEISADLLSEEELALLSKMRPGLV-QLEIGVQTTNPRTIKEIRRKMDLGRLQKNVEK 363

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           I     +I    D I G P E  + FR + + V  +   Q 
Sbjct: 364 I-GSFHNIHQHLDLIAGLPFEGFESFRHSFNEVFAMRPEQL 403


>gi|225175162|ref|ZP_03729158.1| Radical SAM domain protein [Dethiobacter alkaliphilus AHT 1]
 gi|225169338|gb|EEG78136.1| Radical SAM domain protein [Dethiobacter alkaliphilus AHT 1]
          Length = 619

 Score = 54.2 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 66/399 (16%), Positives = 125/399 (31%), Gaps = 61/399 (15%)

Query: 71  HIREKAAEKVYSFLGRIRNL----KNSRIKEGGDLLVVVAGCVAQAEGEEILRR--SPIV 124
            +   A E +   L  +       ++   +      V V        GE+       P V
Sbjct: 165 FVIGDAEEALPQVLLALEEKILSRQDKLKRISEIQGVYVPAFYQAEYGEDGSYSGTHPAV 224

Query: 125 NVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQE 184
           + + G                 +R V +D +         +  GG    R V        
Sbjct: 225 DNLPG---------------QVQRAVISDLNAAPYPTDFIVPYGGIVHDRLVLELF---R 266

Query: 185 GCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGE 243
           GC + C FC           R+ S++ + A +++ + G  E+ L   +            
Sbjct: 267 GCTRGCRFCQAGIIYRPVRERTPSKLRELAGEMVRSTGYDELALSSLSSG-----DYSAI 321

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
           +   ++L   L++    V L   +      S  L +    +      L    ++G+ R+ 
Sbjct: 322 EQLVTELGQELAQEG--VSLSLPSLRLDSFSGELAEQVQRVRK--SGLTFAPEAGTQRLR 377

Query: 304 KSMNRRHTAYEYRQII-DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI----- 357
             +N+  +  +    + D  +S    + +   F++G P ETD+D     DL  K+     
Sbjct: 378 DVINKNISEEDLLNAVTDAFQSGWTGVKLY--FMIGLPTETDEDLLGIADLAQKVVQAYR 435

Query: 358 -------GYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACV 410
                        +  + P+  TP      Q+       R   L+  LR + V F     
Sbjct: 436 QAGKKGKPRVTVSASVFVPKAHTP-FQWEGQISRQEMLRRQDLLRNALRGKGVQF--QWH 492

Query: 411 GQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGD 449
           G     L+E      G+          V +  +   +G 
Sbjct: 493 GAETS-LVEAALARGGR--------DLVPVIDRAAELGS 522


>gi|315122213|ref|YP_004062702.1| lipoyl synthase [Candidatus Liberibacter solanacearum CLso-ZC1]
 gi|313495615|gb|ADR52214.1| lipoyl synthase [Candidatus Liberibacter solanacearum CLso-ZC1]
          Length = 328

 Score = 54.2 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 28/182 (15%), Positives = 67/182 (36%), Gaps = 11/182 (6%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V    G   S  L +  + +  +   G+  + +   +    R    DG   
Sbjct: 96  CTRACAFCNV--ATGKPKSLDLQEPTNISWAVKSMGLSHVVITSVD----RDDLEDGGAQ 149

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
            F++++ ++ +      +   T         L K       +  +    +++ + + L +
Sbjct: 150 HFAEVISAIRKTSPSTTIEVLTPDFLRKPHALEKVVLAKPDVFNH---NLETVASKYL-T 205

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           +      +   +I+ R++ + P +   S  ++G  GET ++    MD +           
Sbjct: 206 VRPGARYFHSLRILQRVKELDPLMFTKSGIMLGL-GETRNEILQLMDDLRIAEVDFLTMG 264

Query: 366 KY 367
           +Y
Sbjct: 265 QY 266


>gi|291522834|emb|CBK81127.1| Coproporphyrinogen III oxidase and related Fe-S oxidoreductases
           [Coprococcus catus GD/7]
          Length = 484

 Score = 54.2 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 35/189 (18%), Positives = 62/189 (32%), Gaps = 17/189 (8%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVN-----AWRGKGL 240
           C   C +C          S  LS    +    +D    EI      +       +   G 
Sbjct: 168 CPSICAYCSFS-------SYPLSVWEKQVDSYLDALCKEIEAASTMMGNKKLLTFYMGGG 220

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY----LHLPVQ 296
                + + +   L+ ++    L + +    +           L VL  +    + +  Q
Sbjct: 221 TPTSLSAAQMDRLLTCLEQYFDLAHVSEKTVEAGRPDSITEDKLKVLRKHHIDRISINPQ 280

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
           + +   L  + RRHT  E +Q     R     + I+ D I G PGET +  + TMD +  
Sbjct: 281 TMNQETLDLIGRRHTTEEVKQAFHMAREA-GFMNINMDLIAGLPGETSEHMQRTMDAIVD 339

Query: 357 IGYAQAFSF 365
           +        
Sbjct: 340 LAPDSVTVH 348


>gi|282855829|ref|ZP_06265131.1| biotin synthase [Pyramidobacter piscolens W5455]
 gi|282586343|gb|EFB91609.1| biotin synthase [Pyramidobacter piscolens W5455]
          Length = 357

 Score = 54.2 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 28/201 (13%), Positives = 62/201 (30%), Gaps = 15/201 (7%)

Query: 176 VTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL--SQVVDEARKLIDNGVCEITLLGQNVN 233
               +     C   C +C +    G      L   +++   R+    G     L G    
Sbjct: 56  TRGLIEFTNECRNDCYYCGIRRGNGAVRRYRLSEEEILGCCRQGYGLGFRTFVLQG---- 111

Query: 234 AWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHL 293
              G+         + L+ ++        +  +     D +  +    G    L+ +   
Sbjct: 112 ---GEDPQYPPERIAPLVAAVRREFPDCAVTLSVGECSDEAYRMFFEAGAERYLLRHETA 168

Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
                  R+L  + +R      R+ +  ++ +     + S F+VG PG+  +   A    
Sbjct: 169 CGGHY--RMLHPLRQR--PENRRRCLWTLKRL--GYQVGSGFMVGSPGQRPEHLVADFQF 222

Query: 354 VDKIGYAQAFSFKYSPRLGTP 374
           +  +         + P+  TP
Sbjct: 223 LKALQPQMIGIGPFIPQRDTP 243


>gi|222530603|ref|YP_002574485.1| biotin synthase [Caldicellulosiruptor bescii DSM 6725]
 gi|222457450|gb|ACM61712.1| Radical SAM domain protein [Caldicellulosiruptor bescii DSM 6725]
          Length = 351

 Score = 54.2 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 25/201 (12%), Positives = 66/201 (32%), Gaps = 17/201 (8%)

Query: 176 VTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL--SQVVDEARKLIDNGVCEITLLGQNVN 233
           +   +     C   C +C +  +        +   ++V+ A++    G   + L      
Sbjct: 53  LRGLIEFSSYCKNDCFYCGLRRSNSQAQRYRMQEDEIVEVAKRAYQMGYRTVVLQS---- 108

Query: 234 AWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHL 293
              G+ +   K     ++  +     +           D       A  D         +
Sbjct: 109 ---GEDMYYTKDMLCSIIKKIKSSVDVAITLSIGERSYDEYKAFKDAGADR------FLM 159

Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
             ++ + ++ +  +   +     + +  I+++     + + F++G PG+T DD    + L
Sbjct: 160 RFETSNKKLYRKYHPGMSFENRIECLKWIKNL--GYELGTGFLIGLPGQTIDDLAQDILL 217

Query: 354 VDKIGYAQAFSFKYSPRLGTP 374
           V ++         + P   TP
Sbjct: 218 VKELDADMIGIGPFIPHPQTP 238


>gi|172041017|ref|YP_001800731.1| coproporphyrinogen III oxidase [Corynebacterium urealyticum DSM
           7109]
 gi|171852321|emb|CAQ05297.1| oxygen-independent coproporphyrinogen III oxidase [Corynebacterium
           urealyticum DSM 7109]
          Length = 421

 Score = 54.2 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 40/250 (16%), Positives = 77/250 (30%), Gaps = 31/250 (12%)

Query: 186 CDKFCTFCVV-----------PYTRGIEISRSL----SQVVDEARKLIDNGVCEITLLGQ 230
           C   C +C             P + G    R+       +  E               G+
Sbjct: 12  CASRCGYCDFNTYTPAELAADPASMGSAQGRTPAGYLDALEVELELAAAAWDRRGLYEGE 71

Query: 231 NVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLM-- 288
           +          G   +       L      VR     +   +++                
Sbjct: 72  SDPGVSTVFFGGGTPSM-LGAEGLVRALNAVRRTVGLAPDAEVTTE-ANPESTSPEFFTR 129

Query: 289 ------PYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGE 342
                   + L +QS +  +LK + R+HT     Q +   ++   +  ++ D I G P E
Sbjct: 130 LREAGFNRISLGMQSAAGHVLKLLERQHTPGRPEQAVAEAKAAGFE-HVNLDLIYGTPTE 188

Query: 343 TDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM-----LEQVDENVKAERLLCLQKK 397
            D+D   ++D V +       ++      GT  +       L   DE+V A+R   + ++
Sbjct: 189 RDEDLARSLDAVIEADVDHVSAYSLIVEDGTAMARKVRRGELPAPDEDVYADRYRMIDER 248

Query: 398 LREQQVSFND 407
           L E    + +
Sbjct: 249 LVEAGFQWYE 258


>gi|164661874|ref|XP_001732059.1| hypothetical protein MGL_0652 [Malassezia globosa CBS 7966]
 gi|159105961|gb|EDP44845.1| hypothetical protein MGL_0652 [Malassezia globosa CBS 7966]
          Length = 336

 Score = 54.2 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 45/251 (17%), Positives = 90/251 (35%), Gaps = 23/251 (9%)

Query: 156 VEDKFERLSIVDGGYNRKRGVTAFLTIQ-EGCDKFCTFCVVPYTRGIEISRSLSQVVDEA 214
            E +   +S   GG   K   TA + +  + C + C FC V  +R         +  + A
Sbjct: 40  EEARCPNISECWGGAGGKEAATATIMLMGDTCTRACRFCAVKTSRKPPA-LDPHEPENTA 98

Query: 215 RKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMS 274
             +   G+  I L   +    R   +DG     +     + +IK   +     +   D  
Sbjct: 99  EAISRWGLGYIVLTSVD----RDDLVDGGASHIALT---IQKIKQKAQNILVEALVPDFG 151

Query: 275 DCLIKAHGDLDVLM-PYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI---RSVRPDIA 330
                +  +++ +    L +   +       +   R    +YRQ +  +   +SVRP++ 
Sbjct: 152 G----SMANVEQVALSGLDVYAHNIETVERTTPLVRDRRAKYRQSLATLQHAKSVRPELV 207

Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER 390
             +  ++G  GETD +   T+  +           +Y  R     +    +V E V+ E+
Sbjct: 208 TKTSIMLG-CGETDAEVEQTLRDLRDANVDVVTFGQYM-RP----TKRHMKVSEYVEPEK 261

Query: 391 LLCLQKKLREQ 401
               Q+   + 
Sbjct: 262 FTHWQRLAEQL 272


>gi|149190329|ref|ZP_01868602.1| hypothetical protein VSAK1_13987 [Vibrio shilonii AK1]
 gi|148835818|gb|EDL52782.1| hypothetical protein VSAK1_13987 [Vibrio shilonii AK1]
          Length = 312

 Score = 54.2 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 31/134 (23%), Positives = 51/134 (38%), Gaps = 13/134 (9%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +L L +Q+  D  LK +NR H    Y +I  R R++   I + +  IVG P E+  D   
Sbjct: 141 WLELGLQTAHDHTLKRINRGHDFAVYDEITRRARAL--GIKVCTHLIVGLPNESKQDNLV 198

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDAC 409
           T+D V   G             G+  +          KA R   L+    E  +      
Sbjct: 199 TLDKVLATGTDGIKLHGLHIVEGSTMA----------KAWRAGRLEAPTLEFYLDVASEM 248

Query: 410 VGQI-IEVLIEKHG 422
           + +   E++  +  
Sbjct: 249 IRRTPAEIIFHRVS 262


>gi|15805169|ref|NP_293856.1| coproporphyrinogen III oxidase [Deinococcus radiodurans R1]
 gi|6457795|gb|AAF09719.1|AE001875_5 coproporphyrinogen III oxidase, putative [Deinococcus radiodurans
           R1]
          Length = 388

 Score = 54.2 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 73/226 (32%), Gaps = 16/226 (7%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR---GKGLDG 242
           C   C +C           R    V     +L             +++      G     
Sbjct: 25  CPSICPYCDFHVLT-----RQAGLVERYLERLEQEAAELAAAYAVDLDTVYLGGGTPSFL 79

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
                  L+ S+    G  R    T      +    +A     +      + VQS  D  
Sbjct: 80  RDHELRALVESVQRHLGWGRAE-NTLEINPGTVSTERAALWRSLGFDRASVGVQSLDDAT 138

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGE-TDDDFRATMDLVDKIGYAQ 361
           LK + RRH A + R  + R+ +   D  +S D I   PG+  D D    +    ++G   
Sbjct: 139 LKFLGRRHDARQARDAVSRLIAQ--DFRVSGDLITAVPGQPLDSDIHGLV----ELGVGH 192

Query: 362 AFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFND 407
             ++  +   GT  +    QVDE+ + E     ++ L     S  +
Sbjct: 193 VSAYTLTIEPGTEFARRGVQVDEDAEREGFERTEELLAGHGFSRYE 238


>gi|17232448|ref|NP_488996.1| coproporphyrinogen III oxidase [Nostoc sp. PCC 7120]
 gi|17134094|dbj|BAB76655.1| coproporphyrinogen III oxidase [Nostoc sp. PCC 7120]
          Length = 396

 Score = 54.2 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 44/211 (20%), Positives = 80/211 (37%), Gaps = 12/211 (5%)

Query: 177 TAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLL---GQNV- 232
           +A++ I   C + C +C  P     +  R  + V       +D    EI +    GQ + 
Sbjct: 12  SAYVHIPF-CRRRCFYCDFPIFVVGDRQRGETSV--TISGYVDVLCEEIAITPAFGQPLK 68

Query: 233 NAWRGKGLDGEKCT--FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY 290
             + G G      T   + +L +L +  G+      +      +  L    G   V +  
Sbjct: 69  TVFFGGGTPSLLSTEQLAQILVTLDKQFGIAPDAEISMEVDPGTFDLAHIQGYRSVGVNR 128

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV-RPDIAISSDFIVGFPGETDDDFRA 349
           + L VQ+  + +LK   R H+  +    ID I  V  P+ +I  D I G P ++ D ++ 
Sbjct: 129 VSLGVQAFQEELLKVAGRSHSLKDIFAAIDLIHQVEIPEFSI--DLISGLPHQSLDQWQD 186

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++D    I       +  +   GT      +
Sbjct: 187 SLDTAVNIAPTHISIYDLTIEPGTAFGRYYK 217


>gi|332299104|ref|YP_004441026.1| Radical SAM domain protein [Treponema brennaborense DSM 12168]
 gi|332182207|gb|AEE17895.1| Radical SAM domain protein [Treponema brennaborense DSM 12168]
          Length = 686

 Score = 54.2 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 55/271 (20%), Positives = 89/271 (32%), Gaps = 47/271 (17%)

Query: 184 EGCDKFCTFCVVPYTRG-IEISRSLSQVVDEARKLIDN-GVC-EITLLG-------QNVN 233
            GC   C+FC + + +G    SRS   +  EAR L    G    I  +G       Q+  
Sbjct: 402 RGCFGACSFCAITFHQGKRIQSRSHDSLEKEARALTALPGFKGYIHDVGGPTANFRQDAC 461

Query: 234 AWRGK----------GLDGEKCTFSD------LLYSLSEIKGLVRLRYTTSHPRDMSDCL 277
           A + K          G D       D      LL  L  + G+ ++   +         L
Sbjct: 462 AKQEKSGACTNRECLGTDPCPNLRVDHRDYVTLLRRLRALPGVKKVFIRS--GIRFDYLL 519

Query: 278 IKAHGD-LDVLMPY-----LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA- 330
           +         L  +     L +  +  S+R+L  M +  T   Y +      ++   +  
Sbjct: 520 LDGDKTFFRELCEHHVSGQLKVAPEHVSNRVLNLMRKS-THEVYERFSCEYAALNRKLGK 578

Query: 331 ---ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV----- 382
              +   +I G PG    D   T   + K G+       + P  G+  + M         
Sbjct: 579 KQYLVPYYIAGHPGAELSDAVETALYLKKTGFVPEQVQDFYPTPGSLATCMYYTALDPRT 638

Query: 383 --DENVKA-ERLLCLQKKLREQQVSFNDACV 410
               +V A  R   LQ+ L +     N A V
Sbjct: 639 MQPIHVAAGARERRLQRALLQFNKPENRALV 669


>gi|219850832|ref|YP_002465264.1| Radical SAM domain protein [Methanosphaerula palustris E1-9c]
 gi|219545091|gb|ACL15541.1| Radical SAM domain protein [Methanosphaerula palustris E1-9c]
          Length = 547

 Score = 54.2 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 36/238 (15%), Positives = 78/238 (32%), Gaps = 30/238 (12%)

Query: 168 GGYNRKRGVTAFLTIQEGCDK----FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVC 223
             +     +   L    GC +     C+FC  P+  G    RS++ V  E   L   G  
Sbjct: 169 PQHPSFPNLVCELETARGCARQVTGGCSFCTEPF-YGPPQYRSVAGVQAEVAALAKAGAR 227

Query: 224 EITLLGQ-NVNAWR---GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIK 279
              L  Q ++ A++   G+  + +      L  ++ E    +   +  +          +
Sbjct: 228 HFRLGRQPDLLAYQSGSGEYPEPDPAAIEALFSAIREAAPDLATLHIDNMNPGTIARHPE 287

Query: 280 AHGDLDVLMPYLHLP-------VQSGSDRILKSMNRRHTAYEYRQIIDRIRSV------- 325
           A       +   H P       +++    ++++ N +    E  + I  + ++       
Sbjct: 288 ASAAALAAIISRHTPGDVAAFGMETADPAVVRANNLKAAPEEVLEAIRIVNALGAVRNQG 347

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA------QAFSFKYSPRLGTPGSN 377
            P++    +F+ G  GET   F      + ++         +    +  P  GT    
Sbjct: 348 IPELLPGLNFVFGLAGETAATFDLDRRFLRQV-LDEGLLVRRINIRQLMPFEGTRAYA 404


>gi|298481082|ref|ZP_06999276.1| Fe-S oxidoreductase family 2 [Bacteroides sp. D22]
 gi|298272656|gb|EFI14223.1| Fe-S oxidoreductase family 2 [Bacteroides sp. D22]
          Length = 546

 Score = 54.2 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 53/378 (14%), Positives = 112/378 (29%), Gaps = 56/378 (14%)

Query: 68  NTCHIREKAAEKVYSFL---------GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEIL 118
           NT  +  +        +          ++ ++ +          V++ G     + E  L
Sbjct: 44  NTGSVVNQIYRHQPDIIAATNWLFNHEQLLHIVSRAKALLPHCCVILGGPEFLGDNEAFL 103

Query: 119 RRSPIVNVVVGPQTYYRLPELLERA-----------------RFGKRVVDTDYSVEDKFE 161
            ++  V+ V   +     P  L+                     G+   +    V +  E
Sbjct: 104 YKNKFVSGVFRGEGEEVFPLWLKVWNQPRKEWKSITGLCYLNESGEYQDNGLARVMNFSE 163

Query: 162 RLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNG 221
            +      +         L    GC   C FC V        + SL  + +    + ++G
Sbjct: 164 LVPPEKSRFFNWSKPFVQLETTRGCFNTCAFC-VSGGEKPVRTLSLEAIKERLDVIHEHG 222

Query: 222 VCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAH 281
           +  + +L +  N    +  +       +L     +I       +   HP  +SD L +  
Sbjct: 223 IKNVRVLDRTFNYNNKRAKE-----LLNLFREYPDI-----CFHLEIHPALLSDELKQEL 272

Query: 282 GDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFP- 340
             L   + +L   +QS  + +L+   R          +  + S+  ++   +D I G P 
Sbjct: 273 ATLPKGLLHLEAGIQSLRENVLEQSRRIGKLSNALAGLHYLCSLE-NMETHADLIAGLPL 331

Query: 341 ---GETDDDFRATMDL-VDKIGYAQAFSFKYSPRLGTPGSNMLEQV--------DENVKA 388
               E  DD R   +    +I              GT      +++           V  
Sbjct: 332 YHLSEIFDDVRTLTEYGAGEIQLESLKL-----LPGTEMRRRADELGIQYSPLPPYEVLQ 386

Query: 389 ERLLCLQKKLREQQVSFN 406
            R + + +      +S  
Sbjct: 387 TREITVDELQTAHYLSRL 404


>gi|325981769|ref|YP_004294171.1| oxygen-independent coproporphyrinogen III oxidase [Nitrosomonas sp.
           AL212]
 gi|325531288|gb|ADZ26009.1| oxygen-independent coproporphyrinogen III oxidase [Nitrosomonas sp.
           AL212]
          Length = 404

 Score = 54.2 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 36/224 (16%), Positives = 82/224 (36%), Gaps = 20/224 (8%)

Query: 186 CDKFCTFCVV--PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
           C K C +C       R  E      + V    + +++ + ++   G+ +N+    G  G 
Sbjct: 24  CLKKCPYCDFNSHELRTDESRVPEEEYVATLIRDLESALQDVW--GRRLNSVFLGG--GT 79

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDC------LIKAHGDLDVL-MPYLHLPVQ 296
              FS    ++  +   VR      H  +++          +   D     +  L + +Q
Sbjct: 80  PSLFS--AGAMDAVLTAVRTLLPLEHFAEVTLEANPGTFEAQKFADFRKAGINRLSIGIQ 137

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
           S + + LK++ R H   E  + +D       +I +  D +   PG+T +  +A ++    
Sbjct: 138 SFNPQHLKALGRVHDDQEAHRAVDIALKYFDNINL--DLMYALPGQTLEHAQADIEAACA 195

Query: 357 IGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLRE 400
            G     ++  +    T       ++ ++  A     +Q  + +
Sbjct: 196 CGVTHISAYHLTLEPNTLFYRFPPKLPDDEAA---AAMQDMIEQ 236


>gi|254584194|ref|XP_002497665.1| ZYRO0F10758p [Zygosaccharomyces rouxii]
 gi|306755857|sp|C5DY71|LIPA_ZYGRC RecName: Full=Lipoyl synthase, mitochondrial; AltName: Full=Lipoate
           synthase; Short=LS; Short=Lip-syn; AltName: Full=Lipoic
           acid synthase; Flags: Precursor
 gi|238940558|emb|CAR28732.1| ZYRO0F10758p [Zygosaccharomyces rouxii]
          Length = 386

 Score = 54.2 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 35/203 (17%), Positives = 73/203 (35%), Gaps = 11/203 (5%)

Query: 167 DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEIT 226
            GG ++ +     + + + C + C FC V   R       +    + A  +   G+  + 
Sbjct: 122 WGGNDKSKATATIMLLGDTCTRGCRFCSVKTNRKPGAPDPME-PENTAEAISRWGLGYVV 180

Query: 227 LLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPR-DMSDCLIKAHGDLD 285
           L   +    R   +DG     ++ +  + +      +       R D     + A   LD
Sbjct: 181 LTTVD----RDDLIDGGSHHLAETVRKIKQKAPNTLVETLAGDFRGDFQAVDVMAQSGLD 236

Query: 286 VLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDD 345
           V    L   V+S +  +     RR T  +   ++ R +   P +   +  ++G  GET +
Sbjct: 237 VYAHNLET-VESLTPHVRD---RRATYRQSLNVLKRAKQTVPTLVTKTSLMLGL-GETHE 291

Query: 346 DFRATMDLVDKIGYAQAFSFKYS 368
           +   T+  + +I        +Y 
Sbjct: 292 EVIQTLRDLREIKCDVVTFGQYM 314


>gi|229006658|ref|ZP_04164292.1| Oxygen-independent coproporphyrinogen III oxidase 1 [Bacillus
           mycoides Rock1-4]
 gi|228754519|gb|EEM03930.1| Oxygen-independent coproporphyrinogen III oxidase 1 [Bacillus
           mycoides Rock1-4]
          Length = 378

 Score = 54.2 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 38/223 (17%), Positives = 79/223 (35%), Gaps = 25/223 (11%)

Query: 186 CDKFCTFCVVPYTRGIEISRSL---------SQVVDEARKLIDNGVCEITLLGQNVNAWR 236
           C   C +C       + I R            ++++  +K+    +  I + G    A  
Sbjct: 11  CQHICHYC---DFNKVFIERQPVDQYLEYLEKEIINTVQKVPFENMKTIFVGGGTPTALN 67

Query: 237 GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQ 296
            +     K     +   L        L +  ++P D+    +     LD  +  +   VQ
Sbjct: 68  MEQT---KKLLDIINRRLRPFAPNCELTFE-ANPGDLPKEKLNLL--LDGGVNRISFGVQ 121

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA-ISSDFIVGFPGETDDDFRATMDLVD 355
           +  D +L+ + R+HT  +    I   + V      I+ D I   PG+T +D + T+D+  
Sbjct: 122 TFRDELLQKIGRKHTREDAFVAIREAQEV--GFTNINVDLIYALPGQTIEDVKETLDIAF 179

Query: 356 KIGYAQAFSFKYSPRLGTPGSNMLEQ----VDENVKAERLLCL 394
            +G     ++       T   N++ +    +       R+  +
Sbjct: 180 TLGVQHFSAYSLIVEPKTVFYNLMNKGKLRLPGEEHEARMYEM 222


>gi|91070534|gb|ABE11440.1| lipoic acid synthetase [uncultured Prochlorococcus marinus clone
           HOT0M-5C8]
          Length = 297

 Score = 54.2 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 33/220 (15%), Positives = 67/220 (30%), Gaps = 11/220 (5%)

Query: 153 DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVD 212
           D  +    +  S  + G     G   FL +  GC + C +C + + R        ++   
Sbjct: 34  DLKLNTVCQEASCPNIGECFASGTATFLIMGPGCTRACPYCDIDFDRSK-RDIDPTEPDR 92

Query: 213 EARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
            A  +    +  + +   N    R    DG    F   +  + +      +         
Sbjct: 93  LAEAVYRMKLKHVVITSVN----RDDLEDGGASQFYKCVAEVRKKSPETTIELLIPDLCG 148

Query: 273 MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAIS 332
               L K       ++ +    V      + + +          +++   R   P +   
Sbjct: 149 NWLALEKVLDSKPNVLNHNVETV----PALYRKVRPEGNYQRTLELLKITREYFPSVYTK 204

Query: 333 SDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY-SPRL 371
           S F++G  GE DD+    +  + K         +Y SP  
Sbjct: 205 SGFMLGL-GEKDDEVLNLLMDLRKNDVDIVTIGQYLSPGP 243


>gi|325955664|ref|YP_004239324.1| cobalamin B12-binding domain protein [Weeksella virosa DSM 16922]
 gi|323438282|gb|ADX68746.1| cobalamin B12-binding domain protein [Weeksella virosa DSM 16922]
          Length = 553

 Score = 54.2 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 50/302 (16%), Positives = 100/302 (33%), Gaps = 50/302 (16%)

Query: 99  GDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSV-E 157
            D  +++ G     E +EI+     V+ ++  +      E L+     ++V +  Y   +
Sbjct: 82  PDTKILLGGPEVSYEYDEIIA-LDCVDFIIVGEGEIPFEEFLDHYPEVEKVSNLVYKKNK 140

Query: 158 DKFERLSIVDGGYNRKRGVTAFL--------------TIQEGCDKFCTFCVVPYTRGIEI 203
           + F     +    NR  G   ++                  GC   C FC+         
Sbjct: 141 EVFFNKQNITFDINRLEGRNPYIYDDPKELAQKVCYIETSRGCPYKCEFCLASLD-NKMR 199

Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
                 + +    L+ +G   I  L +  N  R    D     F  +L +  E  G V  
Sbjct: 200 YLPTETIHENLLYLMKHG-KTIKFLDRTFNIKR----DFTISLFQFILENYRE--GNVFQ 252

Query: 264 RYTTSHPRDMSDCLIKAHGDL-DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
              T+        +IK   +     +    + +Q+ +    + ++R+    +   +I ++
Sbjct: 253 FEITADIVH--PDIIKFVNEYVPKNLFRFEIGIQTVNQASNREVSRKQNFDKTSNVILQL 310

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP----------RLG 372
           +     I +  D IVG P          ++ +  + Y+   +FK  P            G
Sbjct: 311 KDK---IEMHLDLIVGLP----------LEYLQDLKYSFESTFKLYPPELQLGFLKFLKG 357

Query: 373 TP 374
           TP
Sbjct: 358 TP 359


>gi|257469812|ref|ZP_05633904.1| radical SAM superfamily lipoprotein [Fusobacterium ulcerans ATCC
           49185]
 gi|317064042|ref|ZP_07928527.1| radical SAM domain-containing protein [Fusobacterium ulcerans ATCC
           49185]
 gi|313689718|gb|EFS26553.1| radical SAM domain-containing protein [Fusobacterium ulcerans ATCC
           49185]
          Length = 294

 Score = 54.2 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 37/252 (14%), Positives = 93/252 (36%), Gaps = 18/252 (7%)

Query: 161 ERLSIVDGGYNRKRGVTAFLTIQEGCDKF-CTFCVVPYTRGIEISRSLSQVVDEARKLID 219
           E++ I +         +  L +  GC    CTFC +  ++   I + + ++  E      
Sbjct: 5   EKVWIGNIYRPPSEAYSIILQVTIGCSHNKCTFCSMYKSKKFSI-KPIEKIKSEIEY--- 60

Query: 220 NGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM---SDC 276
               +     + +    G  +        ++L  + ++    +   + + P+ +   ++ 
Sbjct: 61  --FRKRVKYAERIFLADGDAMIIPTEMLLEILAYIKKVFPECKRISSYATPKSIELKTND 118

Query: 277 LIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFI 336
            ++   +  +    L++ ++SG D++L+ +N+  ++ E   +  + +       +S  FI
Sbjct: 119 ELRKIRESGI--SLLYIGLESGDDKVLEKINKGVSSDELTALCKKAKEA--GFFLSVTFI 174

Query: 337 VGFPGETD-DDFR-ATMDLVDKIGYAQAFSFKYSPRLGTPGSN--MLEQVDENVKAERLL 392
            G  G+ D  D    T  L+ +I              GT      +  +  E    + L 
Sbjct: 175 AGILGKKDWKDHAVNTGKLISRIEPDYVGILSLMLEEGTEIYTEYLKGEFQEAEGIDILK 234

Query: 393 CLQKKLREQQVS 404
            ++K +    V 
Sbjct: 235 EIEKMIENINVK 246


>gi|256787766|ref|ZP_05526197.1| hypothetical protein SlivT_25033 [Streptomyces lividans TK24]
 gi|289771653|ref|ZP_06531031.1| conserved hypothetical protein [Streptomyces lividans TK24]
 gi|289701852|gb|EFD69281.1| conserved hypothetical protein [Streptomyces lividans TK24]
          Length = 649

 Score = 54.2 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 65/372 (17%), Positives = 118/372 (31%), Gaps = 55/372 (14%)

Query: 52  GYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVV----VAG 107
           G+   N    AD I    C +     + V      IR  K      G + L++      G
Sbjct: 156 GHAAFNPEPIADFI---DCAVIGDGEQAVLEVTAIIRAWKAEGRPGGREELLLRLSKTGG 212

Query: 108 CVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVD 167
               A  +        +  VV  ++                V+D D     K   + + +
Sbjct: 213 VYVPAFYDVEYLPDGRIARVVPNRSGVPWR------VSKHTVMDLDEWPYPKQPLVPLAE 266

Query: 168 GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEIT 226
             + R       + I  GC + C FC           RS++ + +   K +   G  E+ 
Sbjct: 267 TVHERMS-----VEIFRGCTRGCRFCQAGMITRPVRERSITGIGEMVDKGLKATGFEEVG 321

Query: 227 LLGQNVNAWRGKGLDGEKCTFSDLLYSLSE--IKGLVRLRYTTSHPRDMSDCLIKAHGDL 284
           LL  +           +    +D+   L++   +  + L   ++     +  L       
Sbjct: 322 LLSLSS---------ADHTEIADVAKGLADRYEEDKIGLSLPSTRVDAFNIDLANELTRN 372

Query: 285 DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR-----IRSVRPDIAISSDFIVGF 339
                 L    + GS+RI K +N+  +  +  + +        R V+        F+ G 
Sbjct: 373 GR-RSGLTFAPEGGSERIRKVINKMVSEDDLIRTVATAYGNGWRQVK------LYFMCGL 425

Query: 340 PGETDDDFRATMDLVDKI-----GYA-------QAFSFKYSPRLGTPGSNMLEQVDENVK 387
           P ETDDD     D+  ++       +             + P+  TP      Q+     
Sbjct: 426 PTETDDDVLQIADMATRVIAKGREVSGSGDIRCTVSIGGFVPKPHTP-FQWAPQLSAEET 484

Query: 388 AERLLCLQKKLR 399
             RL  L+ K+R
Sbjct: 485 DARLQKLRDKIR 496


>gi|253687569|ref|YP_003016759.1| lipoic acid synthetase [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|259494938|sp|C6DBV6|LIPA_PECCP RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|251754147|gb|ACT12223.1| lipoic acid synthetase [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 321

 Score = 54.2 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 31/183 (16%), Positives = 67/183 (36%), Gaps = 12/183 (6%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V    G  ++   ++    A+ + D G+  + +   +    R    DG   
Sbjct: 94  CTRRCPFCDV--AHGRPLTPDANEPEKLAQTIHDMGLRYVVITSVD----RDDLRDGGAQ 147

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAH-GDLDVLMPYLHLPVQSGSDRILK 304
            F+D + ++      +R+       R   D  ++        +  +    V     R+ +
Sbjct: 148 HFADCISAIRRKNPNIRIETLVPDFRGRMDRALEILTATPPDVFNHNLENV----PRVYR 203

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
            +          ++++  ++  PDI   S  +VG  GET+ +    M  + + G      
Sbjct: 204 QVRPGANYEWSLKLLENFKNAHPDIPTKSGLMVGL-GETNAEIVDVMRDLRRHGVTMLTL 262

Query: 365 FKY 367
            +Y
Sbjct: 263 GQY 265


>gi|297619609|ref|YP_003707714.1| hypothetical protein Mvol_1084 [Methanococcus voltae A3]
 gi|297378586|gb|ADI36741.1| conserved hypothetical protein [Methanococcus voltae A3]
          Length = 352

 Score = 54.2 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 37/90 (41%), Gaps = 2/90 (2%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           ++ L VQS  D+ L  +NR+H A +    I   +     I +    I+G PGET  + R 
Sbjct: 189 WIDLGVQSLQDKTLDLLNRKHNATDTLNAIKNCKER--GIKVCGHIILGLPGETKKEMRE 246

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
           T +L+  I       +       T    M 
Sbjct: 247 TAELLSLIKIDALKIYPLVVIENTKLEEMY 276


>gi|153803400|ref|ZP_01957986.1| oxygen-independent coproporphyrinogen III oxidase [Vibrio cholerae
           MZO-3]
 gi|153830623|ref|ZP_01983290.1| oxygen-independent coproporphyrinogen III oxidase [Vibrio cholerae
           623-39]
 gi|229515850|ref|ZP_04405308.1| coproporphyrinogen III oxidase oxygen-independent [Vibrio cholerae
           TMA 21]
 gi|229520092|ref|ZP_04409520.1| coproporphyrinogen III oxidase oxygen-independent [Vibrio cholerae
           TM 11079-80]
 gi|297581842|ref|ZP_06943763.1| oxygen-independent coproporphyrinogen III oxidase [Vibrio cholerae
           RC385]
 gi|124121057|gb|EAY39800.1| oxygen-independent coproporphyrinogen III oxidase [Vibrio cholerae
           MZO-3]
 gi|148873895|gb|EDL72030.1| oxygen-independent coproporphyrinogen III oxidase [Vibrio cholerae
           623-39]
 gi|229342880|gb|EEO07870.1| coproporphyrinogen III oxidase oxygen-independent [Vibrio cholerae
           TM 11079-80]
 gi|229347113|gb|EEO12074.1| coproporphyrinogen III oxidase oxygen-independent [Vibrio cholerae
           TMA 21]
 gi|297533936|gb|EFH72776.1| oxygen-independent coproporphyrinogen III oxidase [Vibrio cholerae
           RC385]
          Length = 480

 Score = 54.2 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 52/298 (17%), Positives = 105/298 (35%), Gaps = 24/298 (8%)

Query: 127 VVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVD----GGYNRKRGVTAFLTI 182
           VV  Q       +L++  +      +  +  +  E  +I D         +R ++ ++ I
Sbjct: 23  VVPSQQIVWDQAILDKYNYSGPRYTSYPTAVEFHEAFTIADFDMACTQYPERPLSLYIHI 82

Query: 183 QEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG 242
              C K C +C          S    + +D     I        L+G+NV         G
Sbjct: 83  PF-CHKLCYYCGCNKVITRH-SHKADEYLDVLEHEIRQ--RASLLIGRNVTQLH---FGG 135

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL-------MPYLHLPV 295
              TF      +S +  L+R  +  +   ++S  +      L+VL          + + V
Sbjct: 136 GTPTF-LTNAQISRLMTLLRSEFHFADEAEISIEIDPREIQLEVLDHLRQEGFNRVSIGV 194

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS-DFIVGFPGETDDDFRATMDLV 354
           Q  +  + K +NR         +++R + +      ++ D I G P +T   F  T+  V
Sbjct: 195 QDFNKEVQKLVNREQDEQFIFDLVERAKQL--GFRSTNLDLIYGLPKQTAATFAQTLQQV 252

Query: 355 DKIGYAQAFSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVG 411
             +   +   F Y+       +   +++ D     E+L  LQ+ +     +     +G
Sbjct: 253 LTMQPGRLSVFNYAHMPQLFAAQRKIKEADLPAAEEKLAILQQTITTLTGAGYQ-FIG 309


>gi|160878708|ref|YP_001557676.1| coproporphyrinogen III oxidase [Clostridium phytofermentans ISDg]
 gi|160427374|gb|ABX40937.1| Coproporphyrinogen dehydrogenase [Clostridium phytofermentans ISDg]
          Length = 491

 Score = 54.2 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 36/204 (17%), Positives = 67/204 (32%), Gaps = 21/204 (10%)

Query: 173 KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNV 232
           + G + ++ I   C   C +C          S  L +        +     E+      +
Sbjct: 166 QNGYSIYIGIPF-CPSTCHYCSFT-------SYPLERFEHLVEPYLMALTKEMEYASTCL 217

Query: 233 ----NAWRGKGLDGEKCTFSDLLYSLSEIK------GLVRLRYTTSHPRDMSDCLIKAHG 282
               +     G      +   L Y L++I       GL  L      P  ++   ++   
Sbjct: 218 DKPLSTLYVGGGTPTTLSAKQLEYLLTKIDHYFGIKGLKELTVEAGRPDSITREKLQVLK 277

Query: 283 DLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGE 342
           D    +  + +  QS   + L  + R+HTA +  +     R +  D  I+ D I+G  GE
Sbjct: 278 DFG--VSRISINPQSMRQKTLDLIGRKHTATQIEEAFYLAREIGHD-NINMDIIIGLSGE 334

Query: 343 TDDDFRATMDLVDKIGYAQAFSFK 366
              D   T+D +  +         
Sbjct: 335 NPSDVIYTLDRIKSMNPDSLTVHT 358


>gi|91224951|ref|ZP_01260210.1| coproporphyrinogen III oxidase [Vibrio alginolyticus 12G01]
 gi|91190197|gb|EAS76467.1| coproporphyrinogen III oxidase [Vibrio alginolyticus 12G01]
          Length = 463

 Score = 54.2 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 41/250 (16%), Positives = 87/250 (34%), Gaps = 24/250 (9%)

Query: 173 KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNV 232
           +R ++ ++ I   C K C +C          S    + +D     I        L  + V
Sbjct: 56  ERPLSLYVHIPF-CHKLCYYCGCNKVITRH-SHKADEYLDVLEHEIRQ--RAALLASRTV 111

Query: 233 NAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL----- 287
                    G   TF      ++ +  L+R  +T S   ++S  +     +L +L     
Sbjct: 112 TQLH---FGGGTPTF-LSEKQITRVMSLLRQEFTFSSDAEISIEVDPREIELTMLDHLRS 167

Query: 288 --MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS-DFIVGFPGETD 344
                L + VQ  +  + + +NR         ++ R + +      ++ D I G P +T 
Sbjct: 168 EGFNRLSIGVQDFNKEVQQLVNREQDEEFIFAMVARAKEL--GFRSTNLDLIYGLPKQTK 225

Query: 345 DDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM---LEQVDENVKAERLLCLQKKLREQ 401
             F  T++ V ++   +   F Y+       +      + + +    E++  LQ  +   
Sbjct: 226 ASFAKTLEQVLEMQPGRLSVFNYAHMPQLFAAQRKIKDDDLPKAE--EKMAILQDTIATL 283

Query: 402 QVSFNDACVG 411
             +     +G
Sbjct: 284 TGAGYQ-FIG 292


>gi|89072513|ref|ZP_01159085.1| hypothetical protein SKA34_18349 [Photobacterium sp. SKA34]
 gi|89051617|gb|EAR57070.1| hypothetical protein SKA34_18349 [Photobacterium sp. SKA34]
          Length = 312

 Score = 54.2 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 31/103 (30%), Positives = 46/103 (44%), Gaps = 9/103 (8%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +L L +Q+ +++ LK +NR H    Y  I  R R++   I + +  IVG PG+T  D   
Sbjct: 141 WLELGLQTANEKTLKRINRGHDFAFYATITQRARAL--GIKVCTHLIVGLPGDTKQDNLD 198

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLL 392
           T+  V  +G             G   S M     +  KAERL 
Sbjct: 199 TISKVVSVGVDGIKLHPLHIVEG---SKMG----QAFKAERLD 234


>gi|323142307|ref|ZP_08077139.1| coproporphyrinogen dehydrogenase HemZ [Phascolarctobacterium sp.
           YIT 12067]
 gi|322413191|gb|EFY04078.1| coproporphyrinogen dehydrogenase HemZ [Phascolarctobacterium sp.
           YIT 12067]
          Length = 488

 Score = 54.2 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 37/180 (20%), Positives = 68/180 (37%), Gaps = 17/180 (9%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C   C++C  P     +   S    V+   + + N V  I +    V +    G  G   
Sbjct: 167 CPSRCSYCSFPAGIVPQDEESQQNFVNMIEQDLQNVVQLIGMHSLRVKSLYIGG--GTPT 224

Query: 246 TFSD--LLYSLSEI---------KGLVRLR-YTTSHPRDMSDCLIKAHGDLDVLMPYLHL 293
           + SD      L  +         +GL  LR +T    R       K        +  + +
Sbjct: 225 SLSDKVFARLLQAVERRLLQSNCEGLRHLREFTVEAGRPDCFSAAKLAAMEAAGVNRISV 284

Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRS-VRPDIAISSDFIVGFPGETDDDFRATMD 352
             QS  D+ L+ + RRH+  ++    + +R    P   ++ D I+G P ET+ +   +++
Sbjct: 285 NPQSFHDKTLQLIGRRHSVKDFYNAYELVRKSRIP--VVNVDLIIGLPQETEQEIAYSLE 342


>gi|304404972|ref|ZP_07386632.1| conserved hypothetical protein [Paenibacillus curdlanolyticus YK9]
 gi|304345851|gb|EFM11685.1| conserved hypothetical protein [Paenibacillus curdlanolyticus YK9]
          Length = 321

 Score = 54.2 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 35/191 (18%), Positives = 60/191 (31%), Gaps = 11/191 (5%)

Query: 188 KFCTFCVVPYTRGIEISRSLSQVV---DEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK 244
             CTFC      G    R    +V   +  R            +G               
Sbjct: 58  GGCTFCSA-RGSGDFAGRRRDDLVTQFNTIRDRQHQKWPNAKYIG---YFQAYTNTYAPV 113

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL-DVLMPYLHLPVQSGSDRIL 303
               +    + E  G+V L    + P  + D +I    +L +    +L + +Q+  +   
Sbjct: 114 EELREYFEVILEQPGVVGLSI-ATRPDCLPDDVIDYLAELNERTYLWLEMGLQTIHESTS 172

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           + +NR H    Y   + R+R+    I + +  I G P ET      T   V ++      
Sbjct: 173 ELINRAHDTACYEDAVRRLRAR--GIRVCAHIIYGLPQETHQMMMDTCRAVARMDVQGIK 230

Query: 364 SFKYSPRLGTP 374
                    TP
Sbjct: 231 IHLLHLMRKTP 241


>gi|295092490|emb|CBK78597.1| Fe-S oxidoreductase [Clostridium cf. saccharolyticum K10]
          Length = 655

 Score = 54.2 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 75/221 (33%), Gaps = 10/221 (4%)

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           + R    +V T  +       +    G          +     GC   C++C+       
Sbjct: 193 KVRAEAEIVTTPPAPLLDLNEIPFAYGDLQGLEHRIIYYESSRGCPFSCSYCL-SSIDKS 251

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
              R L  V +E    ++  V ++  + +  N  +         + +   + L    G+ 
Sbjct: 252 VRFRDLELVKEELAFFLEKKVPQVKFVDRTFNCRKSH-------SMAVWQFILENDNGIT 304

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
              +  S      + L         L+  L + VQ+ + R +K + R+      ++ +++
Sbjct: 305 NFHFEISADLLSEEELALLSKMRPGLV-QLEIGVQTTNPRTIKEIRRKMDLGRLQKNVEK 363

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           I     +I    D I G P E  + FR + + V  +   Q 
Sbjct: 364 I-GSFHNIHQHLDLIAGLPFEGFESFRHSFNEVFAMRPEQL 403


>gi|228999110|ref|ZP_04158692.1| Oxygen-independent coproporphyrinogen III oxidase 1 [Bacillus
           mycoides Rock3-17]
 gi|228760727|gb|EEM09691.1| Oxygen-independent coproporphyrinogen III oxidase 1 [Bacillus
           mycoides Rock3-17]
          Length = 378

 Score = 54.2 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 38/223 (17%), Positives = 79/223 (35%), Gaps = 25/223 (11%)

Query: 186 CDKFCTFCVVPYTRGIEISRSL---------SQVVDEARKLIDNGVCEITLLGQNVNAWR 236
           C   C +C       + I R            ++++  +K+    +  I + G    A  
Sbjct: 11  CQHICHYC---DFNKVFIERQPVDQYLEYLEKEIINTVQKVPFENMKTIFVGGGTPTALN 67

Query: 237 GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQ 296
            +     K     +   L        L +  ++P D+    +     LD  +  +   VQ
Sbjct: 68  MEQT---KKLLDIINRRLRPFAPNCELTFE-ANPGDLPKEKLNLL--LDGGVNRISFGVQ 121

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA-ISSDFIVGFPGETDDDFRATMDLVD 355
           +  D +L+ + R+HT  +    I   + V      I+ D I   PG+T +D + T+D+  
Sbjct: 122 TFRDELLQKIGRKHTREDAFVAIREAQEV--GFTNINVDLIYALPGQTIEDVKETLDIAF 179

Query: 356 KIGYAQAFSFKYSPRLGTPGSNMLEQ----VDENVKAERLLCL 394
            +G     ++       T   N++ +    +       R+  +
Sbjct: 180 TLGVQHFSAYSLIVEPKTVFYNLMNKGKLRLPGEEHEARMYEM 222


>gi|197120130|ref|YP_002140557.1| radical SAM domain iron-sulfur cluster-binding oxidoreductase
           [Geobacter bemidjiensis Bem]
 gi|197089490|gb|ACH40761.1| radical SAM domain iron-sulfur cluster-binding oxidoreductase,
           TIGR01212 family [Geobacter bemidjiensis Bem]
          Length = 321

 Score = 54.2 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 25/172 (14%), Positives = 57/172 (33%), Gaps = 9/172 (5%)

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT--TS 268
           ++ A++++         +                     L      +  +V L       
Sbjct: 65  LEHAKEVMVRKYKAARFIA---YFQSYSNTYAPVERLKALYDEALSVPDVVGLIVGTRPD 121

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
              + +  L+ ++        +L L +QS  DR L ++ R H    +   +   R     
Sbjct: 122 CLPEATLDLLASYARRTYF--WLELGLQSHLDRTLAAIGRGHDRASFESALKGCRER--G 177

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           I + +  I+G PGE+ ++  +  + +++ G             GT  +   E
Sbjct: 178 IRVCAHVILGLPGESREEMLSCAEYLNRQGVDGVKVHLLHVMRGTRLAEQYE 229


>gi|51891561|ref|YP_074252.1| putative Fe-S oxidoreductase [Symbiobacterium thermophilum IAM
           14863]
 gi|51855250|dbj|BAD39408.1| putative Fe-S oxidoreductase [Symbiobacterium thermophilum IAM
           14863]
          Length = 636

 Score = 54.2 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 58/288 (20%), Positives = 107/288 (37%), Gaps = 40/288 (13%)

Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
           PE++ERA     V D D         +      ++R     A + +  GC + C FC   
Sbjct: 232 PEVVERA----TVKDLDSIDYPTRPVVPNTQIVFDR-----AQVEVFRGCTRGCRFCHAG 282

Query: 197 YTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
           Y       RS   V   AR+++ N G  E++L+   ++      +       SD L    
Sbjct: 283 YITRPVRERSPEVVQRLAREIVKNTGYSELSLVS--LSTADYTDVQQTVSRLSDQLRC-- 338

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
                V +   ++     S  L  A   +      + L  + GS RI + +N+  +    
Sbjct: 339 ---DGVNVTLPSTRVDAFSVALADAVSKVRK--GSITLAPEGGSARIRRVINKTVS---D 390

Query: 316 RQIIDRIRSVRP--DIAISSDFIVGFPGETDDDFRA-------TMDLVD------KIGYA 360
           R I + +R+       A+   FI+G P ETD D  A        +++ +      +    
Sbjct: 391 RDIREAMRAAFRSGYRAVKLYFILGLPTETDADLEAIAEKGRWALEIAEEELGRQEARKV 450

Query: 361 QA--FSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFN 406
           +       + P+  TP      QV       R   +++ L+++++ + 
Sbjct: 451 RVTISVSVFVPKPHTP-FQFEPQVTLAEARRRQEHIKRFLKDRRIEYK 497


>gi|295096616|emb|CBK85706.1| lipoate synthase [Enterobacter cloacae subsp. cloacae NCTC 9394]
          Length = 321

 Score = 54.2 bits (129), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 31/183 (16%), Positives = 65/183 (35%), Gaps = 12/183 (6%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V    G  ++   ++    A+ + D  +  + +   +    R    DG   
Sbjct: 94  CTRRCPFCDV--AHGRPVAPDANEPQKLAQTIADMALRYVVITSVD----RDDLRDGGAQ 147

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAH-GDLDVLMPYLHLPVQSGSDRILK 304
            F+D + ++ E    +++       R   D  +         +  +    V     RI +
Sbjct: 148 HFADCITAIREKSPNIKIETLVPDFRGRMDRALDILTATPPDVFNHNLENV----PRIYR 203

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
            +          ++++R +   P I   S  +VG  GET+ +    M  + + G      
Sbjct: 204 QVRPGADYNWSLKLLERFKEAHPHIPTKSGLMVGL-GETNAEIIEVMRDLRRHGVTMLTL 262

Query: 365 FKY 367
            +Y
Sbjct: 263 GQY 265


>gi|296130055|ref|YP_003637305.1| oxygen-independent coproporphyrinogen III oxidase [Cellulomonas
           flavigena DSM 20109]
 gi|296021870|gb|ADG75106.1| oxygen-independent coproporphyrinogen III oxidase [Cellulomonas
           flavigena DSM 20109]
          Length = 412

 Score = 54.2 bits (129), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 45/265 (16%), Positives = 85/265 (32%), Gaps = 41/265 (15%)

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC------VVPYTRGIEIS 204
           D D +  D     S   G   R  GV   +     C   C +C            G    
Sbjct: 7   DGDPAPADGALPASAAHGADGRAFGVYLHVPF---CAVRCGYCDFNTYTATELGGGA--- 60

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
            SL+     A   +      +   G          + G   T   +   +  + G VR  
Sbjct: 61  -SLASYARTALGEVALADRVLRRAGVPARPVSTVFVGGGTPTLLPVDDLVRLLDG-VRTT 118

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMP------------YLHLPVQSGSDRILKSMNRRHTA 312
           +  +   +++        + D + P             +   +QS    +L++++R H  
Sbjct: 119 WGIAAGAEVTTE-----ANPDSVTPEGLARLAAAGVTRVSFGMQSAVPHVLRTLDRTHDP 173

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
                ++   R     + +S D I G PGE+ DD+R +++     G     ++      G
Sbjct: 174 ARVPDVVRWARDA--GLRVSLDLIYGTPGESLDDWRLSVETALMTGVDHVSAYALVVEPG 231

Query: 373 TPGS--------NMLEQVDENVKAE 389
           T  +         + ++ D+  K E
Sbjct: 232 TRMAVQVRRGELTLPDEDDQATKYE 256


>gi|28211656|ref|NP_782600.1| coproporphyrinogen III oxidase [Clostridium tetani E88]
 gi|28204098|gb|AAO36537.1| oxygen-independent coproporphyrinogen III oxidase [Clostridium
           tetani E88]
          Length = 382

 Score = 54.2 bits (129), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 30/201 (14%), Positives = 75/201 (37%), Gaps = 16/201 (7%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQV----VDEARKLIDNGVCEITLLGQNVNAWRGKGLD 241
           C + C +C        E S     +     +  R+ +D  +  I + G       G    
Sbjct: 20  CKEKCKYCDFISYSKKE-SFMKEYIEALSKEIKRECMDKKIRSIYIGG-------GTPSY 71

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTT-SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300
                +  L  ++  +     L ++  ++P  +++  +K   ++ +    +   +Q+   
Sbjct: 72  VPNKYWEILKETIDNLNKSKNLEFSIEANPGTVTEEKLKFFKEMGI--NRISFGLQAWQH 129

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
            +L  + R H   E+       R +  D  I+ D + G P +  ++++ T++ + ++   
Sbjct: 130 HLLNKLGRIHNIEEFLYSYKLARKLGFD-NINVDLMFGIPDQKLENWKETLEKIVELNPE 188

Query: 361 QAFSFKYSPRLGTPGSNMLEQ 381
               +      GTP   + E+
Sbjct: 189 HISCYSLIVEEGTPFYKLYEK 209


>gi|329115363|ref|ZP_08244117.1| Putative methyltransferase [Acetobacter pomorum DM001]
 gi|326695342|gb|EGE47029.1| Putative methyltransferase [Acetobacter pomorum DM001]
          Length = 535

 Score = 54.2 bits (129), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 31/201 (15%), Positives = 67/201 (33%), Gaps = 19/201 (9%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVC-EITLLGQNVNAWRG 237
           +    GC   C FC +    G    +++ +QV+ E   L   G    +  +  N+     
Sbjct: 176 IQFSRGCPFSCEFCDIIELYGRVPRTKTNAQVIAELDALYALGYRGHVDFVDDNLI---- 231

Query: 238 KGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM----SDCLIKAHGDLDVLMPYLHL 293
               G K      L  L   +   +  +  S    +       L+++  + +     + +
Sbjct: 232 ----GNKKALKKFLPDLKLWQNKKKFPFEFSTEASINLADDTDLLRSLAETNFFA--VFI 285

Query: 294 PVQSGSDRILKSMNRR-HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352
            ++S     L    ++ +T    ++ I +I      I +++ FIVGF  E        ++
Sbjct: 286 GIESPDTDTLVMTQKKQNTRRSLQESITKIHEA--GIFVNAGFIVGFDSEKSSVAAGMVE 343

Query: 353 LVDKIGYAQAFSFKYSPRLGT 373
            ++                 T
Sbjct: 344 CIEDTSIPVCMVGLLYALPTT 364


>gi|126696541|ref|YP_001091427.1| lipoyl synthase [Prochlorococcus marinus str. MIT 9301]
 gi|126543584|gb|ABO17826.1| Lipoate synthase [Prochlorococcus marinus str. MIT 9301]
          Length = 299

 Score = 54.2 bits (129), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 32/193 (16%), Positives = 66/193 (34%), Gaps = 22/193 (11%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V   R   I+  + +    A  +    +  + L        R    D    
Sbjct: 71  CSRSCAFCQVNKGRPSPIN--IDECTQVAEAVKVLNLKYVVLTSV----ARDDLPDHGAN 124

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRD-----------MSDCLIKAHGDLDVLMPYLHLP 294
            F   +  + +I   +++   T                 ++ L        +   +    
Sbjct: 125 LFISTIDEIRKIDSTIKIEVLTPDLWGGGKNLDETNNLQTERLKMILEKDPICFNHNLET 184

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           V+    R+ K + R     +   ++++ + + P I   S  ++G  GET D+ + T+  +
Sbjct: 185 VE----RLQKEVRRGANYKKSLSLLEKSKDIAPHIQTKSGIMLGL-GETLDEIKNTIYDL 239

Query: 355 DKIGYAQAFSFKY 367
            KI   Q    +Y
Sbjct: 240 KKIDCDQITIGQY 252


>gi|323136814|ref|ZP_08071895.1| Radical SAM domain protein [Methylocystis sp. ATCC 49242]
 gi|322398131|gb|EFY00652.1| Radical SAM domain protein [Methylocystis sp. ATCC 49242]
          Length = 563

 Score = 54.2 bits (129), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 38/246 (15%), Positives = 83/246 (33%), Gaps = 19/246 (7%)

Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           AR  K++           E         + +      +    GC   C FC +P   G  
Sbjct: 188 ARPEKQIRFETRERTPLEEFPIPAYELVSFENYFIGSIQFSSGCPYRCEFCDIPGLYGRV 247

Query: 203 -ISRSLSQVVDEARKLIDNGVCE-ITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
              +S  ++V E  KL + G+   +  +  N+ A         +    +LL  L  I+  
Sbjct: 248 PRLKSPQRIVAELDKLRECGLTTSVYFVDDNLIA--------NRRALRELLPVL--IEWQ 297

Query: 261 VRLRYTTSHPRDMSDCLI---KAHGDLDVLM-PYLHLPVQSGSDRILKSMNRRHTAYEYR 316
            +  +  S   + +  +         L +     + + V++  +  L S+++        
Sbjct: 298 EKNSFPLSFAFEATLNIARYDDLLSQLRLACFTTIFVGVETPEEDALVSLDKE--QNMTL 355

Query: 317 QIIDRIRSVR-PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
            I++ +R +    + + +  IVG   +     +  +D ++                 TP 
Sbjct: 356 PILEAVRRLNAHGMEVVAGIIVGLDTDGPQTQQRIIDFIEASQIPMLTINLLQALPKTPL 415

Query: 376 SNMLEQ 381
            + LE+
Sbjct: 416 WDRLEK 421


>gi|303231363|ref|ZP_07318097.1| radical SAM family uncharacterized protein [Veillonella atypica
           ACS-049-V-Sch6]
 gi|302513959|gb|EFL55967.1| radical SAM family uncharacterized protein [Veillonella atypica
           ACS-049-V-Sch6]
          Length = 627

 Score = 54.2 bits (129), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 37/211 (17%), Positives = 78/211 (36%), Gaps = 18/211 (8%)

Query: 138 ELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197
           E +      + + D ++        +  +D  ++R     A L +  GC + C FC    
Sbjct: 226 EDVPATIQKRIIEDVEHVFFPTKPVVPFLDIVHDR-----AVLELFRGCTRGCRFCQAGM 280

Query: 198 TRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256
                  R+  ++++ A++ I N G  EI+L+  +   +             +L+  L E
Sbjct: 281 LYRPVRERTPERLLEIAKETIANTGYNEISLMSLSSADY---------SKLPELVDMLME 331

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY-LHLPVQSGSDRILKSMNRRHTAYEY 315
                ++  +    R  S   I     +  +    L    ++GS R+   +N+  +  + 
Sbjct: 332 EFKDKQVSVSLPSLRIDSFS-IDIAKKVQQVRKSGLTFAPEAGSQRMRDVINKGVSEEDL 390

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDD 346
                       +  +   F++G P ETD+D
Sbjct: 391 LAACTNAFKSGWN-TVKLYFMMGLPTETDED 420


>gi|116072312|ref|ZP_01469579.1| Putative oxygen-independent coproporphyrinogen III oxidase
           [Synechococcus sp. BL107]
 gi|116064834|gb|EAU70593.1| Putative oxygen-independent coproporphyrinogen III oxidase
           [Synechococcus sp. BL107]
          Length = 347

 Score = 54.2 bits (129), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 30/150 (20%), Positives = 57/150 (38%), Gaps = 10/150 (6%)

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGD---LDVL----MPYLHLP 294
           G           ++++   +RLRY      +++  +  A  D   L  +    +  + L 
Sbjct: 4   GGGTPSLLSPDQIADLLDQLRLRYGLQEGAEITLEMDPASFDQHQLKKVLALGVNRISLG 63

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP--DIAISS-DFIVGFPGETDDDFRATM 351
            QS  D +L+ + RRH A +  +  + +       +++  S D I   PG+T   +   +
Sbjct: 64  GQSFDDSVLEQLGRRHRAKDLLEACEWMDDAYRSGELSSWSLDLIQSLPGQTLAGWEHQL 123

Query: 352 DLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           D     G      +  S   GT   + L Q
Sbjct: 124 DRAIACGSPHISIYDLSVEPGTVFHHRLNQ 153


>gi|90416206|ref|ZP_01224138.1| lipoic acid synthetase [marine gamma proteobacterium HTCC2207]
 gi|90331931|gb|EAS47145.1| lipoic acid synthetase [marine gamma proteobacterium HTCC2207]
          Length = 326

 Score = 54.2 bits (129), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 34/247 (13%), Positives = 79/247 (31%), Gaps = 11/247 (4%)

Query: 121 SPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFL 180
            P V+V   P+          + +  K ++   + +    E  +  +       G   F+
Sbjct: 35  IPTVDVQRKPEWMRIRLSSSPKVQTIKNIL-RKHKMATVCEEAACPNLHECFSNGTATFM 93

Query: 181 TIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL 240
            + E C + C FC V    G        +  + A  + +  +  + +   +    R    
Sbjct: 94  IMGEICTRRCPFCDV--GHGKPNPLDTEEPKNLALAIHEMALNYVVITSVD----RDDLR 147

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300
           DG    F+D +     +   +++       R      ++         P +         
Sbjct: 148 DGGAQHFADCIREAKLLSPDLQVEVLVPDFRGRMAPALEILTATP---PDVFNHNMETVP 204

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
           R+ +            +++   +++ P +   S  +VG  GET ++   T+D +      
Sbjct: 205 RLYREARPGANYEWSLKLLKDYKALNPHVPTKSGLMVGL-GETKEELLRTLDDLRAHDVD 263

Query: 361 QAFSFKY 367
                +Y
Sbjct: 264 MLTVGQY 270


>gi|325290545|ref|YP_004266726.1| oxygen-independent coproporphyrinogen III oxidase [Syntrophobotulus
           glycolicus DSM 8271]
 gi|324965946|gb|ADY56725.1| oxygen-independent coproporphyrinogen III oxidase [Syntrophobotulus
           glycolicus DSM 8271]
          Length = 393

 Score = 54.2 bits (129), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 41/207 (19%), Positives = 71/207 (34%), Gaps = 29/207 (14%)

Query: 186 CDKFCTFCVVPYT----RGIE-ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL 240
           C K C +C          G E  +RS+       RK ++    EI+L  Q+         
Sbjct: 11  CVKKCPYCAFYSVALAPNGKEDKNRSV-----LIRKYLEGIRKEISLRRQDAPGGVSSLF 65

Query: 241 DGEKCT-------FSDLLYSLSEIKGLVR------LRYTTSHPRDMSDCLIKAHGDLDVL 287
            G             +LL  + EI G         +        +    +++A G     
Sbjct: 66  IGGGTPSVLDEGELKELLILIGEIAGRNDGRTERTIECNPGTINEKKAQILQAFGINR-- 123

Query: 288 MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDF 347
              + L VQ+  D  LK + R H   +  + +  IR    D  ++ D + G PG+T + +
Sbjct: 124 ---VSLGVQALDDGFLKEIGRIHGVKQVEEAVKIIRGAGID-NLNLDLMFGLPGQTMEKW 179

Query: 348 RATMDLVDKIGYAQAFSFKYSPRLGTP 374
             T++            +  +    TP
Sbjct: 180 FETLEKAIAFKPQHLSLYALTLEEETP 206


>gi|239931301|ref|ZP_04688254.1| hypothetical protein SghaA1_23980 [Streptomyces ghanaensis ATCC
           14672]
 gi|291439675|ref|ZP_06579065.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
 gi|291342570|gb|EFE69526.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
          Length = 654

 Score = 54.2 bits (129), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 77/428 (17%), Positives = 126/428 (29%), Gaps = 79/428 (18%)

Query: 43  RMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLL 102
            M       G+   N    AD I    C +     + V      IR  K      G + L
Sbjct: 149 VMAG-----GHAAFNPEPIADFI---DCAVIGDGEQAVLEVTRIIRAWKEEGRPGGREEL 200

Query: 103 VV----VAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVED 158
           +       G       +        +  VV  ++                V+D D     
Sbjct: 201 LFRLARTGGVYVPGFYDVEYLPDGRIARVVPNRSGVPWR------VSKHTVMDLDEWPYP 254

Query: 159 KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLI 218
           K   + + +  + R       + I  GC + C FC           RS++ + +   K +
Sbjct: 255 KQPLVPLAETVHERMS-----VEIFRGCTRGCRFCQAGMITRPVRERSITGIGEMVDKGL 309

Query: 219 DN-GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCL 277
              G  E+ LL     +       G+        Y   +I     L   ++     +  L
Sbjct: 310 KATGFEEVGLLS---LSSADHSEIGDIAKGLADRYEDDKIG----LSLPSTRVDAFNIDL 362

Query: 278 IKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR-----IRSVRPDIAIS 332
                        L    + GS+RI K +N+  +  +  + +        R V+      
Sbjct: 363 ANELTRNGR-RSGLTFAPEGGSERIRKVINKMVSEDDLIRTVATAYGNGWRQVK------ 415

Query: 333 SDFIVGFPGETDDDFRATMDLV-------------DKIGYAQAFSFKYSPRLGTPGSNML 379
             F+ G P ETDDD     D+              + I         + P+  TP     
Sbjct: 416 LYFMCGLPTETDDDVLQIADMATRVIAKGREVSGSNDIRCT-VSIGGFVPKPHTP-FQWA 473

Query: 380 EQVDENVKAERLLCLQKKLR---------------------EQQVSFNDACVGQIIEVLI 418
            Q+      ERL  L+ K+R                     E  +S  D  VG +I  + 
Sbjct: 474 PQLSAEGTDERLAKLRDKIRGDKKYGRSIGFRYHDGKPGIVEGLLSRGDRRVGAVIRAVY 533

Query: 419 EKHGKEKG 426
           E  G+  G
Sbjct: 534 EDGGRFDG 541


>gi|170760466|ref|YP_001788275.1| coproporphyrinogen III oxidase [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169407455|gb|ACA55866.1| oxygen-independent coproporphyrinogen III oxidase [Clostridium
           botulinum A3 str. Loch Maree]
          Length = 380

 Score = 54.2 bits (129), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 33/216 (15%), Positives = 79/216 (36%), Gaps = 18/216 (8%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C++C        E    +  V   ++++++N   +I      +    G        
Sbjct: 19  CMQKCSYCDFTSYSKKE-DLMMEYVKALSKEIVNNTKNKIIKT---IFIGGGTPTYLSLE 74

Query: 246 TFSDLLYSLSEIKGLVRLRYTTS----HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
             + L  +L  I     + +T         +    L+K+ G     +  L + +QS  + 
Sbjct: 75  ALNILKNTLKTIDKKENIEFTVEGNPGTFTEKKLKLLKSMG-----VNRLSIGLQSSKNS 129

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
           +LK++ R H+  ++       R    +  I+ D +   P ++ DD++ T+  V  +    
Sbjct: 130 LLKTLGRIHSFEDFVHSFKIARKEGFN-NINVDLMFALPNQSLDDWKETLLKVVDLSPEH 188

Query: 362 AFSFKYSPRLGTPGSNMLE----QVDENVKAERLLC 393
              +       T   N+ E    ++ +  +  ++  
Sbjct: 189 LSCYSLIIEEETTFHNLYENSLLKLPKEEEERKMYE 224


>gi|21221064|ref|NP_626843.1| hypothetical protein SCO2606 [Streptomyces coelicolor A3(2)]
 gi|6983748|emb|CAB75387.1| hypothetical protein [Streptomyces coelicolor A3(2)]
          Length = 661

 Score = 54.2 bits (129), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 65/372 (17%), Positives = 118/372 (31%), Gaps = 55/372 (14%)

Query: 52  GYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVV----VAG 107
           G+   N    AD I    C +     + V      IR  K      G + L++      G
Sbjct: 168 GHAAFNPEPIADFI---DCAVIGDGEQAVLEVTAIIRAWKAEGRPGGREELLLRLSKTGG 224

Query: 108 CVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVD 167
               A  +        +  VV  ++                V+D D     K   + + +
Sbjct: 225 VYVPAFYDVEYLPDGRIARVVPNRSGVPWR------VSKHTVMDLDEWPYPKQPLVPLAE 278

Query: 168 GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEIT 226
             + R       + I  GC + C FC           RS++ + +   K +   G  E+ 
Sbjct: 279 TVHERMS-----VEIFRGCTRGCRFCQAGMITRPVRERSITGIGEMVDKGLKATGFEEVG 333

Query: 227 LLGQNVNAWRGKGLDGEKCTFSDLLYSLSE--IKGLVRLRYTTSHPRDMSDCLIKAHGDL 284
           LL  +           +    +D+   L++   +  + L   ++     +  L       
Sbjct: 334 LLSLSS---------ADHTEIADVAKGLADRYEEDKIGLSLPSTRVDAFNIDLANELTRN 384

Query: 285 DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR-----IRSVRPDIAISSDFIVGF 339
                 L    + GS+RI K +N+  +  +  + +        R V+        F+ G 
Sbjct: 385 GR-RSGLTFAPEGGSERIRKVINKMVSEDDLIRTVATAYGNGWRQVK------LYFMCGL 437

Query: 340 PGETDDDFRATMDLVDKI-----GYA-------QAFSFKYSPRLGTPGSNMLEQVDENVK 387
           P ETDDD     D+  ++       +             + P+  TP      Q+     
Sbjct: 438 PTETDDDVLQIADMATRVIAKGREVSGSGDIRCTVSIGGFVPKPHTP-FQWAPQLSAEET 496

Query: 388 AERLLCLQKKLR 399
             RL  L+ K+R
Sbjct: 497 DARLQKLRDKIR 508


>gi|296134343|ref|YP_003641590.1| cobalamin B12-binding domain protein [Thermincola sp. JR]
 gi|296032921|gb|ADG83689.1| cobalamin B12-binding domain protein [Thermincola potens JR]
          Length = 490

 Score = 54.2 bits (129), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 44/298 (14%), Positives = 96/298 (32%), Gaps = 35/298 (11%)

Query: 92  NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIV-NVVVGPQTYYRLPELLERARFGKR-- 148
            +  +    ++ ++ G  A     E+L     + ++ V  +    +PE++E    GKR  
Sbjct: 86  RAAKEVNPGIITLLGGIHANFCYRELLEEQGDILDIAVRGEGELTVPEIMEAFSGGKRLD 145

Query: 149 -VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTI--------------------QEGCD 187
            +    Y + ++ +         +    + A+  +                      GC 
Sbjct: 146 GIPGVAYRLGNEVKINPPRPFIGDLDSLIPAWDLVEWEDYSFYVIPGSRLGIVNSSRGCI 205

Query: 188 KFCTFC-VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT 246
             C+FC    +       R     V+E   L D     + +L         +  +     
Sbjct: 206 NECSFCSQQKFWYRTYRERKAETFVEELEHLRDCYGVNVVMLSDEYATRNRERWE----R 261

Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306
             DL+  +    G+  L  T          ++  +    VL  ++++ V++ +   L   
Sbjct: 262 ILDLM--IERQTGVYLLLETCVADIIRDADILWKYRKAGVL--HIYVGVEATNQEKLDIF 317

Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
            +       R+ I  I      +     F++G P ET +  ++T+ L        A  
Sbjct: 318 KKNVACENSREAIRLINEA--GMITECSFVLGMPDETPESIKSTLKLAKHYNPDFAHF 373


>gi|256396386|ref|YP_003117950.1| radical SAM domain-containing protein [Catenulispora acidiphila DSM
           44928]
 gi|256362612|gb|ACU76109.1| Radical SAM domain protein [Catenulispora acidiphila DSM 44928]
          Length = 645

 Score = 54.2 bits (129), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 56/316 (17%), Positives = 103/316 (32%), Gaps = 53/316 (16%)

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
             V+D D     K   + + +  + R       + I  GC + C FC           RS
Sbjct: 240 HTVMDLDEWPYPKQPLVPLAETVHERMS-----VEIFRGCTRGCRFCQAGMITRPVRERS 294

Query: 207 LSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE--IKGLVRL 263
           ++ + +     +   G  E+ LL  +           +    +++   L++        L
Sbjct: 295 ITGIGEMVEAGLAATGYEEVGLLSLSS---------ADHTEIAEVAKGLADRYEGTNTSL 345

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
              ++     +  L             L    + GS+R+ K +N+  T  +  + +    
Sbjct: 346 SLPSTRVDAFNIDLANELSRNGR-RSGLTFAPEGGSERMRKVINKMVTEEDLIRTVTAAY 404

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA------------QAFSFKYSPRL 371
                  +   F+ G P ETD+D     DL  K+  A                  + P+ 
Sbjct: 405 GAGWR-QVKLYFMCGLPTETDEDVLQIADLARKVIKAGREASGTRDIRCTVSIGGFVPKP 463

Query: 372 GTPGSNMLEQVDENVKAERLLCLQKKLR---------------------EQQVSFNDACV 410
            TP      Q+D      RL+ L+  +R                     E  +S  D  V
Sbjct: 464 HTP-FQWAAQLDAEGTDARLVKLRDAIRADKNYGKAIGFRYHDGKPGVIEGLLSRGDRRV 522

Query: 411 GQIIEVLIEKHGKEKG 426
           G++I  + E+ G+  G
Sbjct: 523 GKVIREVWERGGRFDG 538


>gi|254424836|ref|ZP_05038554.1| radical SAM domain protein [Synechococcus sp. PCC 7335]
 gi|196192325|gb|EDX87289.1| radical SAM domain protein [Synechococcus sp. PCC 7335]
          Length = 916

 Score = 54.2 bits (129), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 49/277 (17%), Positives = 83/277 (29%), Gaps = 22/277 (7%)

Query: 110 AQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGG 169
           A    EEIL     V  V  P+ Y  + +                 V       SI    
Sbjct: 206 AGLSREEILLDLAQVPGVYVPRFYDMVTDGSVHPNRPDVPNRILRRVAPPMPEYSIGLVP 265

Query: 170 YNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLL 228
           Y         + I+ GC + C FC               QV+D   K +   G  E +LL
Sbjct: 266 YVETVHDRLTVEIRRGCTRGCRFCQPGMLTRPARDVPPEQVIDTIEKGMRETGYNEFSLL 325

Query: 229 GQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLM 288
                               ++   L      + L   +       + +    G L    
Sbjct: 326 S-----LSCSDYLALPAVGLEIKNRLQN--DNINLSLPSQRVDRFDENIANIVGGLRQ-- 376

Query: 289 PYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDD-- 346
             L    ++G+ R+   +N+  T  E  + +        +  +   F++G PGETD D  
Sbjct: 377 TGLTFAPEAGTQRMRDIINKGLTNEELLRGVKTAYEQGWE-RVKLYFMIGLPGETDVDVL 435

Query: 347 -FRATMDLVDKIGYAQ--------AFSFKYSPRLGTP 374
               T+  + +  + +              +P+  TP
Sbjct: 436 GVAETVRWLRRECFIKGRRALKFNITISNLTPKPHTP 472


>gi|77463890|ref|YP_353394.1| coproporphyrinogen III oxidase [Rhodobacter sphaeroides 2.4.1]
 gi|85700421|sp|P33770|HEMF_RHOS4 RecName: Full=Coproporphyrinogen-III oxidase, anaerobic 1;
           Short=Coprogen oxidase; Short=Coproporphyrinogenase
 gi|77388308|gb|ABA79493.1| Coproporphyrinogen III oxidase, oxygen-independent (HemN)
           [Rhodobacter sphaeroides 2.4.1]
          Length = 452

 Score = 54.2 bits (129), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 32/210 (15%), Positives = 76/210 (36%), Gaps = 20/210 (9%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA--WRGKGLDGE 243
           C++ C FC    T+G        Q +      +   + E+ L+ Q++ A    G+   G 
Sbjct: 60  CERLCWFCA-CRTQGT-------QTLAPVEAYVGTLLQELELVKQHLPAGVKAGRLHWGG 111

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL-------MPYLHLPVQ 296
                     + ++   ++     +   + S  +     D   +       M    + +Q
Sbjct: 112 GTPTILSPELIHKLAQAIKAVIPFAEDYEFSVEIDPMMVDEPKIRALSEEGMNRASIGIQ 171

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
             +D +  ++ R       +  ++ +R      ++++D + G P +  +   AT+D V  
Sbjct: 172 DFTDIVQNAIGREQPFENTKACVETLRRYGVH-SLNTDLVYGLPHQNRESLAATIDKVLS 230

Query: 357 IGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           +   +   F Y+       +   + +DE V
Sbjct: 231 LRPDRVAIFGYAHVP--WMAKRQKLIDETV 258


>gi|83747414|ref|ZP_00944453.1| Coproporphyrinogen oxidase, anaerobic [Ralstonia solanacearum
           UW551]
 gi|83725871|gb|EAP73010.1| Coproporphyrinogen oxidase, anaerobic [Ralstonia solanacearum
           UW551]
          Length = 525

 Score = 54.2 bits (129), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 39/194 (20%), Positives = 70/194 (36%), Gaps = 16/194 (8%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C   C +C        + +RS   +   AR++       I  L Q      G    G   
Sbjct: 121 CANLCYYCGCNKVVTKDHTRSARYIRALAREM-AMIARHIGPLRQATQLHWG----GGTP 175

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL-------MPYLHLPVQSG 298
           TF      + ++    R  +  +   ++S  L   H   D L            L +Q  
Sbjct: 176 TF-LSHDEMRDVMAATRKHFALTSDAEISVELDPRHAGDDTLAVLADLGFNRASLGIQDF 234

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDI-AISSDFIVGFPGETDDDFRATMDLVDKI 357
              +  +++R  +  + R ++D  R +     +IS D I G P +  D F AT+D V ++
Sbjct: 235 DADVQHAIHRVQSVEQTRHVVDSARRL--GFQSISFDLIYGLPHQHIDTFNATLDRVLEM 292

Query: 358 GYAQAFSFKYSPRL 371
              +   + Y+   
Sbjct: 293 APDRLSVYSYAHLP 306


>gi|114561230|ref|YP_748743.1| coproporphyrinogen III oxidase [Shewanella frigidimarina NCIMB 400]
 gi|114332523|gb|ABI69905.1| oxygen-independent coproporphyrinogen III oxidase [Shewanella
           frigidimarina NCIMB 400]
          Length = 446

 Score = 54.2 bits (129), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 35/234 (14%), Positives = 80/234 (34%), Gaps = 17/234 (7%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C K C +C         I+R   +       L    +    L           G  G   
Sbjct: 51  CAKLCYYC----GCNKIITRHSHKADQYIEYLATEIIKRAPLFKNYTVTQMHWG--GGTP 104

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL-------MPYLHLPVQSG 298
           TF      + ++  L++  +  +   + S  +     +L +L          + + VQ  
Sbjct: 105 TF-LSPEQILKLTALIKQHFNFADVGEYSIEVDPREIELSMLDTLKEAGFNRVSIGVQDF 163

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           +  +  ++NR         +I R + +   ++ + D I G P +T + F  T+  + ++ 
Sbjct: 164 NKEVQIAVNREQDEQFIFDLIARAKEL-GFVSTNVDLIYGLPLQTPETFAKTIARIIELS 222

Query: 359 YAQAFSFKYSPRL-GTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVG 411
             +   F Y+           +++ D     ++L  L++ +     +     +G
Sbjct: 223 PDRLSVFNYAHLPSRFAAQRKIKEHDMPAPQQKLDMLRQTIESLTDAGYQ-FIG 275


>gi|269127462|ref|YP_003300832.1| oxygen-independent coproporphyrinogen III oxidase [Thermomonospora
           curvata DSM 43183]
 gi|268312420|gb|ACY98794.1| oxygen-independent coproporphyrinogen III oxidase [Thermomonospora
           curvata DSM 43183]
          Length = 403

 Score = 54.2 bits (129), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 37/202 (18%), Positives = 63/202 (31%), Gaps = 16/202 (7%)

Query: 186 CDKFCTFCVVPYTRGIE----ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD 241
           C   C +C        E     SR        A   I        +LGQ     R     
Sbjct: 39  CVTRCGYCDFNTYTAAELGPGASRD-----SYADAAIAELRLARRVLGQTDLPVRTVFFG 93

Query: 242 GEKCTFS---DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIK---AHGDLDVLMPYLHLPV 295
           G   T     +L   L+ I     L        + +   +               +   +
Sbjct: 94  GGTPTLLPPGELGRILAAIDAEFGLAPGAEVTTEANPESVDEGYLEQLRAAGFTRISYGM 153

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
           QS    +L +++R HT     Q++   R    +  ++ D I G PGE+  D+RA++    
Sbjct: 154 QSARPHVLAALDRVHTPGRIPQVVRWARKAGFE-QVNLDLIYGTPGESAADWRASLLAAL 212

Query: 356 KIGYAQAFSFKYSPRLGTPGSN 377
           +       ++      GT  + 
Sbjct: 213 ETEPDHISAYALIVEEGTRLAA 234


>gi|53802648|ref|YP_112649.1| lipoyl synthase [Methylococcus capsulatus str. Bath]
 gi|81683202|sp|Q60CJ6|LIPA_METCA RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|53756409|gb|AAU90700.1| lipoic acid synthetase [Methylococcus capsulatus str. Bath]
          Length = 322

 Score = 54.2 bits (129), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 46/265 (17%), Positives = 86/265 (32%), Gaps = 21/265 (7%)

Query: 110 AQAEGEEILRRSPIVNVVVGPQTYYRLPELLE-RARFGKRVVDT-----DYSVEDKFERL 163
           +   G E L R P   V V P    R P+ +  RA  G  V        +  +    E  
Sbjct: 17  SHRRGAEKLSRIP---VKVEPGAPLRKPDWIRVRAGSGDEVRRVKRLLRERGLHSVCEEA 73

Query: 164 SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVC 223
           +  +       G   F+ + + C + C FC V    G       ++    A  +    + 
Sbjct: 74  ACPNLAECFGHGTATFMILGDICTRRCPFCDV--AHGRPAPPDPAEPERLAETIALLRLR 131

Query: 224 EITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHG- 282
            + +   +    R    DG    F+  + +L      + +   T   R   +  +     
Sbjct: 132 YVVITSVD----RDDLRDGGAAHFAACIRALRTRSPALSVEILTPDFRGRMEIALDLLAA 187

Query: 283 DLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGE 342
           D   +  +    V     R+ +         +  +++ R R   P +   S  ++G  GE
Sbjct: 188 DPPDVFNHNIETV----PRLYRQARPGADYRQSLELLARFRDKVPGVPTKSGLMLGL-GE 242

Query: 343 TDDDFRATMDLVDKIGYAQAFSFKY 367
           T D+ R  +  +   G       +Y
Sbjct: 243 TLDEVREALRDLRGHGCEMLTLGQY 267


>gi|295094926|emb|CBK84017.1| radical SAM protein, TIGR01212 family [Coprococcus sp. ART55/1]
          Length = 292

 Score = 54.2 bits (129), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 37/179 (20%), Positives = 69/179 (38%), Gaps = 11/179 (6%)

Query: 206 SLSQVVDEARKLIDNGVCEITLLG--QNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
           S+ + ++ A+K I         +   Q+     G  +D  +  F             V  
Sbjct: 59  SIDEQIELAKKRISGKCKCDRYIAYFQSYTNTYG-DVDALREKFLAAARR-----DDVAA 112

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMP-YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
               S P      +I    D+  + P ++ L +Q+ +DR  + +NR +    Y + ++R+
Sbjct: 113 VSIASRPDCFGPEVIDMIKDIIAVKPVWIELGLQTANDRTAQLINRCYDISVYDETMNRL 172

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           R +   + I    I+G PGET +D   T+  + + G             GT    M E+
Sbjct: 173 REL--GVHIIVHMIIGLPGETKEDMIDTVRYIVRSGANGIKLQLLHVLRGTVLEKMYEE 229


>gi|254519984|ref|ZP_05132040.1| radical SAM domain-containing protein [Clostridium sp. 7_2_43FAA]
 gi|226913733|gb|EEH98934.1| radical SAM domain-containing protein [Clostridium sp. 7_2_43FAA]
          Length = 677

 Score = 54.2 bits (129), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 43/269 (15%), Positives = 84/269 (31%), Gaps = 39/269 (14%)

Query: 147 KRVVDTDYSVEDKFERLSIVD--GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI- 203
           +  +D  Y++    E   I D  GG      V   +    GC   C+FC + + +G  + 
Sbjct: 269 REELDKVYALPYTKECHPIYDEFGGIAALEEVKFSIVSSRGCFGNCSFCAITFHQGRAVQ 328

Query: 204 SRSLSQVV-DEARKLIDNGVC-EITLLG-----------------------QNVNAWRGK 238
           SRS S ++ +             I  +G                       Q +     K
Sbjct: 329 SRSESSILDEAVEITNLKDFKGYIHDVGGPTANFRKPACKTQLTIGACKSKQCLTPKPCK 388

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVR------LRYTTSHPRDMSDCLIKAHGDLDVLMPYLH 292
            L  +   F  LL  + ++  + +      LRY             +       +   L 
Sbjct: 389 NLIVDHSEFLGLLRKIRKLPKVKKAFVRSGLRYDYIMADKDDTFFRELV--EHHVSGQLK 446

Query: 293 LPVQSGSDRILKSMNRRH--TAYEYRQIIDRI-RSVRPDIAISSDFIVGFPGETDDDFRA 349
           +  +  +   LK M +    T   +R+   +I + +  +  +    +   PG   ++   
Sbjct: 447 VAPEHVAANTLKYMGKPSGDTYDRFREKFFKINKQLGKEQYLIPYLMSSHPGSGLNEAIE 506

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
             + +    Y       + P  GT  + M
Sbjct: 507 LAEYLRDTKYQPEQVQDFYPTPGTLSTAM 535


>gi|218550894|ref|YP_002384685.1| coproporphyrinogen III oxidase [Escherichia fergusonii ATCC 35469]
 gi|218358435|emb|CAQ91082.1| coproporphyrinogen III oxidase, SAM and NAD(P)H dependent,
           oxygen-independent [Escherichia fergusonii ATCC 35469]
 gi|324111946|gb|EGC05926.1| oxygen-independent coproporphyrinogen III oxidase [Escherichia
           fergusonii B253]
          Length = 457

 Score = 54.2 bits (129), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 44/269 (16%), Positives = 91/269 (33%), Gaps = 30/269 (11%)

Query: 157 EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS-------LSQ 209
           ED  E+  +       +R ++ ++ I   C K C FC        +  ++         +
Sbjct: 34  EDFGEQAFLQAVARYPERPLSLYVHIPF-CHKLCYFCGCNKIVTRQQHKADQYLDALEQE 92

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE-----IKGLVRLR 264
           +V  A       V ++   G       G      K   S L+  L E         + + 
Sbjct: 93  IVHRAPLFTRRKVSQLHWGG-------GTPTYLNKAQISRLMKLLRENFQFNTDAEISIE 145

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
                PR++   ++            L + VQ  +  + + +NR         +++  R 
Sbjct: 146 V---DPREIELDVLDHLRAEG--FNRLSMGVQDFNKEVQRLVNREQDEEFIFALLNHARE 200

Query: 325 VRPDIAISS-DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQV 382
           +      ++ D I G P +T + F  T+  V ++   +   F Y+       +   ++  
Sbjct: 201 I--GFTSTNIDLIYGLPKQTPESFAFTLKRVAELNPDRLSVFNYAHLPTIFAAQRKIKDA 258

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVG 411
           D     ++L  LQ+ +     S     +G
Sbjct: 259 DLPSPQQKLDILQETIAFLTQSGYQ-FIG 286


>gi|254228536|ref|ZP_04921961.1| oxygen-independent coproporphyrinogen III oxidase [Vibrio sp. Ex25]
 gi|262392685|ref|YP_003284539.1| coproporphyrinogen III oxidase oxygen-independent [Vibrio sp. Ex25]
 gi|151938918|gb|EDN57751.1| oxygen-independent coproporphyrinogen III oxidase [Vibrio sp. Ex25]
 gi|262336279|gb|ACY50074.1| coproporphyrinogen III oxidase oxygen-independent [Vibrio sp. Ex25]
          Length = 463

 Score = 54.2 bits (129), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 42/251 (16%), Positives = 85/251 (33%), Gaps = 28/251 (11%)

Query: 174 RGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVN 233
           R ++ ++ I   C K C +C          S    + +D     I        L+G+ V 
Sbjct: 57  RPLSLYVHIPF-CHKLCYYCGCNKVITRH-SHKADEYLDVLEHEIRQ--RAALLVGRTVT 112

Query: 234 AWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDC---------LIKAHGDL 284
                   G   TF      ++ +  L+R  +T S   ++S           ++      
Sbjct: 113 QLH---FGGGTPTF-LSEKQITRVMSLLRQEFTFSSDAEISIEVDPREIQITMLDHLRSE 168

Query: 285 DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS-DFIVGFPGET 343
                 L + VQ  +  + K +NR         ++ R + +      ++ D I G P +T
Sbjct: 169 G--FNRLSIGVQDFNKEVQKLVNREQDEEFIFAMVARAKEL--GFRSTNLDLIYGLPKQT 224

Query: 344 DDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM---LEQVDENVKAERLLCLQKKLRE 400
              F  T++ V ++   +   F Y+       +      E + +    E++  LQ  +  
Sbjct: 225 KVSFAKTLEQVLEMQPGRLSVFNYAHMPQLFAAQRKIKDEDLPKAE--EKMAILQDTIAT 282

Query: 401 QQVSFNDACVG 411
              +     +G
Sbjct: 283 LTGAGYQ-FIG 292


>gi|229543318|ref|ZP_04432378.1| lipoic acid synthetase [Bacillus coagulans 36D1]
 gi|229327738|gb|EEN93413.1| lipoic acid synthetase [Bacillus coagulans 36D1]
          Length = 306

 Score = 54.2 bits (129), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 40/254 (15%), Positives = 86/254 (33%), Gaps = 20/254 (7%)

Query: 114 GEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRK 173
            EEILR+   + + +     Y   + L R      V +          R   +   +  +
Sbjct: 4   QEEILRKPEWLKIKLNTNENYTGLKKLMRTENLHTVCEE--------ARCPNIHECWGTR 55

Query: 174 RGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVN 233
           R  T F+ + + C + C FC V      E+     +    A  +    +  + +      
Sbjct: 56  RTAT-FMILGDTCTRACRFCAVKTGLPSEL--DWQEPERVAESVKKMNLKHVVVT----M 108

Query: 234 AWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHL 293
             R    DG     ++ + ++  +     +    S  +   + L         ++ +   
Sbjct: 109 VARDDLKDGGAAVMAETIRAIRRMNPFTTIEVLPSDLQGRYESLKTLMDAKPDILNHNIE 168

Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
            V+  +    + +  R T     + + R + ++P+I   S  +VG  GET ++    MD 
Sbjct: 169 TVRRLT----RRVRARATYDRSLEFLRRAKEMQPEIPTKSSIMVGL-GETMEELAEAMDD 223

Query: 354 VDKIGYAQAFSFKY 367
           +           +Y
Sbjct: 224 LRANDVDIVTFGQY 237


>gi|153214833|ref|ZP_01949641.1| oxygen-independent coproporphyrinogen III oxidase [Vibrio cholerae
           1587]
 gi|124115076|gb|EAY33896.1| oxygen-independent coproporphyrinogen III oxidase [Vibrio cholerae
           1587]
          Length = 480

 Score = 54.2 bits (129), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 52/298 (17%), Positives = 105/298 (35%), Gaps = 24/298 (8%)

Query: 127 VVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVD----GGYNRKRGVTAFLTI 182
           VV  Q       +L++  +      +  +  +  E  +I D         +R ++ ++ I
Sbjct: 23  VVPSQQIVWDQAILDKYNYSGPRYTSYPTAVEFHEAFTIADFDMACTQYPERPLSLYIHI 82

Query: 183 QEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG 242
              C K C +C          S    + +D     I        L+G+NV         G
Sbjct: 83  PF-CHKLCYYCGCNKVITRH-SHKADEYLDVLEHEIRQ--RASLLIGRNVTQLH---FGG 135

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL-------MPYLHLPV 295
              TF      +S +  L+R  +  +   ++S  +      L+VL          + + V
Sbjct: 136 GTPTF-LTNAQISRLMTLLRSEFHFADEAEISIEIDPREIQLEVLDYLRQEGFNRVSIGV 194

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS-DFIVGFPGETDDDFRATMDLV 354
           Q  +  + K +NR         +++R + +      ++ D I G P +T   F  T+  V
Sbjct: 195 QDFNKEVQKLVNREQDEQFIFDLVERAKQL--GFRSTNLDLIYGLPKQTAATFAQTLQQV 252

Query: 355 DKIGYAQAFSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVG 411
             +   +   F Y+       +   +++ D     E+L  LQ+ +     +     +G
Sbjct: 253 LTMQPGRLSVFNYAHMPQLFAAQRKIKEADLPAAEEKLAILQQTITTLTGAGYQ-FIG 309


>gi|170722745|ref|YP_001750433.1| coproporphyrinogen III oxidase [Pseudomonas putida W619]
 gi|169760748|gb|ACA74064.1| oxygen-independent coproporphyrinogen III oxidase [Pseudomonas
           putida W619]
          Length = 460

 Score = 54.2 bits (129), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 42/263 (15%), Positives = 90/263 (34%), Gaps = 21/263 (7%)

Query: 160 FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR------SLSQVVDE 213
           F+ L  +       R ++ ++ +   C   C +C        + +R       L Q +  
Sbjct: 38  FDLLHALRESRRAVRPLSVYVHVPF-CANICYYCACNKVITKDRARAAPYLQRLEQEIQL 96

Query: 214 ARKLID--NGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPR 271
               +D    V ++ L G          L     T       L +  G   +        
Sbjct: 97  IACHLDPKQRVEQLHLGGGTPTFLSHVELRQLMATLRQHFNLLDDDSGDYGIELDPREAD 156

Query: 272 DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAI 331
             +  L++  G        + L VQ     + +++NR  +  + R +I+  R+++   ++
Sbjct: 157 WSTMGLLRELG-----FNRVSLGVQDLDPAVQRAINRLQSLEQTRTLIEAARTLQFR-SV 210

Query: 332 SSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY--SPRLGTPGSNML-EQVDENVKA 388
           + D I G P +T + F  T++ V ++   +   F Y   P    P   +    +      
Sbjct: 211 NLDLIYGLPKQTPEGFARTVEEVIRLQPDRLSVFNYAHLPERFMPQRRIDSNDLPAPAAK 270

Query: 389 ERLLCLQKKLREQQVSFNDACVG 411
             L  L+  + +   +     +G
Sbjct: 271 --LEMLRATIEQLTTAGY-RYIG 290


>gi|127514648|ref|YP_001095845.1| coproporphyrinogen III oxidase [Shewanella loihica PV-4]
 gi|126639943|gb|ABO25586.1| oxygen-independent coproporphyrinogen III oxidase [Shewanella
           loihica PV-4]
          Length = 446

 Score = 54.2 bits (129), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 34/238 (14%), Positives = 75/238 (31%), Gaps = 25/238 (10%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C K C +C         I+R   +       L    V    L     +    +   G   
Sbjct: 51  CAKLCYYC----GCNKVITRHQHKADQYIEYLAAEIVKRAPLFK---HYQVTQIHWGGGT 103

Query: 246 TFSDLLYSLSEIKGLVRLRYTTS---------HPRDMSDCLIKAHGDLDVLMPYLHLPVQ 296
                   +  +  L+R  +  +          PR++   ++    +       + + VQ
Sbjct: 104 PTFLSPEQILRLSALLREHFNIAEEGEYSIEVDPREIELSMLDTLKEAG--FNRISVGVQ 161

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
             +  +  ++NR         +I + ++    ++ + D I G P +T + F  TM  V  
Sbjct: 162 DFNKEVQIAVNREQDEQFIFDLIAKAKA-MGFVSTNIDLIYGLPHQTPESFAETMQRVLD 220

Query: 357 IGYAQAFSFKYSPRLGTPGSNM---LEQVDENVKAERLLCLQKKLREQQVSFNDACVG 411
           +   +   F Y+       +      E +      ++L  L + +     +     +G
Sbjct: 221 LSPDRLSVFNYAHLPARFAAQRKIKDEHLP--TPQQKLEMLHQTIETLTGAGYQ-YIG 275


>gi|328768432|gb|EGF78478.1| hypothetical protein BATDEDRAFT_13027 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 330

 Score = 54.2 bits (129), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 42/259 (16%), Positives = 89/259 (34%), Gaps = 32/259 (12%)

Query: 156 VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEAR 215
            E K   +    GG   K      + + + C + C FC V   R    +   ++    A 
Sbjct: 46  EEAKCPNIGECWGGGEEKTATATIMLMGDECTRGCRFCSVKTNRKP-KALDPNEPEHTAE 104

Query: 216 KLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE---------IKGLVRLRYT 266
            +   G+  I +   +    R    DG    F++ +    +         + G  R    
Sbjct: 105 AISRWGLGYIVMTSVD----RDDLPDGGASHFANTVRLTKKKSPKILVECLTGDFRGNLD 160

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
                 +S   +  +             +++  +      +RR    +   +++  + VR
Sbjct: 161 DVETVALSG--LDVYAHN----------IETVENLQPYVRDRRAGFRQSLSVLEHAKKVR 208

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           PD+   +  ++G  GETD++   T++ + K+        +Y  R  T   +M  +V E V
Sbjct: 209 PDLITKTSMMLGL-GETDEEVIHTLEELRKVDVDVVTFGQYM-RPTTK--HM--KVSEYV 262

Query: 387 KAERLLCLQKKLREQQVSF 405
             E+        ++    +
Sbjct: 263 HPEKFQHWADVAKQMGFKY 281


>gi|146282463|ref|YP_001172616.1| oxygen-independent coproporphyrinogen III oxidase [Pseudomonas
           stutzeri A1501]
 gi|145570668|gb|ABP79774.1| oxygen-independent coproporphyrinogen III oxidase [Pseudomonas
           stutzeri A1501]
          Length = 462

 Score = 54.2 bits (129), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 43/250 (17%), Positives = 83/250 (33%), Gaps = 20/250 (8%)

Query: 157 EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARK 216
           ED +   +         + ++ ++ I   C   C +C         I+    + V+    
Sbjct: 37  EDDYRAAAARSNQAQPPKPLSVYIHIPF-CKSLCYYC----ACNKIITHKTERAVEYLEY 91

Query: 217 LIDNGVCEITLLG-----QNVNAWRGKGLDGEKCTFSDLLYSLSEI----KGLVRLRYTT 267
           L      +  L         ++   G          +DL+ SL +               
Sbjct: 92  LKREIAMQGALFDRSRKLTQLHLGGGTPTYFTSEQLADLMASLHQAFNMDDSDSHEFSLE 151

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
             PR ++   I     L      L   VQ   +++  ++NR  T  + R+++   R  R 
Sbjct: 152 VDPRTVTPEQIHGLRKLG--FNRLSFGVQDFDEQVQIAVNRIQTEEQTRELVQAARDARF 209

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT-PGSNM--LEQVDE 384
             ++S D I G P +T   F AT+  +  I   +  ++ Y+          +   E +  
Sbjct: 210 K-SVSVDLIYGLPLQTVASFDATLSKIIDIRPDRIAAYSYAHLPDLVRAQKLIRPEDMPP 268

Query: 385 NVKAERLLCL 394
             +   LL L
Sbjct: 269 PERKLELLEL 278


>gi|58865650|ref|NP_001012037.1| lipoyl synthase, mitochondrial precursor [Rattus norvegicus]
 gi|81883774|sp|Q5XIH4|LIAS_RAT RecName: Full=Lipoyl synthase, mitochondrial; AltName: Full=Lipoate
           synthase; Short=LS; Short=Lip-syn; AltName: Full=Lipoic
           acid synthase; Flags: Precursor
 gi|53733508|gb|AAH83708.1| Lipoic acid synthetase [Rattus norvegicus]
          Length = 373

 Score = 54.2 bits (129), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 34/183 (18%), Positives = 65/183 (35%), Gaps = 9/183 (4%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V   R        S+  + AR + + G+  + L   +    R   +DG   
Sbjct: 136 CTRGCRFCSVKTARNPP-PLDPSEPDNTARAIAEWGLDYVVLTSVD----RDDVVDGGAE 190

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
             +  +  L E    + +   T    D    L          +      V++  +   K 
Sbjct: 191 HIAKTVSCLKERNPKILVECLTP---DFRGDLRAVEKVALSGLDVYAHNVETVPELQRKV 247

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
            + R    +  +++   + V+PD+   +  ++G  GETD+   ATM  +           
Sbjct: 248 RDPRANFDQSLRVLKHAKEVQPDVVSKTSIMLGL-GETDEQVYATMKALRAADVDCLTLG 306

Query: 366 KYS 368
           +Y 
Sbjct: 307 QYM 309


>gi|319795586|ref|YP_004157226.1| oxygen-independent coproporphyrinogen iii oxidase [Variovorax
           paradoxus EPS]
 gi|315598049|gb|ADU39115.1| oxygen-independent coproporphyrinogen III oxidase [Variovorax
           paradoxus EPS]
          Length = 420

 Score = 54.2 bits (129), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 36/236 (15%), Positives = 76/236 (32%), Gaps = 22/236 (9%)

Query: 186 CDKFCTFCVVPYTRGIEIS------RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
           C + C +C          S         +  +D     +D  +  I     +     G  
Sbjct: 47  CLRKCPYCDFNSHEWRATSAADAEGIPEAAYIDALVADLDAALPLIWGRTVHTIFIGG-- 104

Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY-------LH 292
             G    FS    ++  + G VR R   +   +++        + +    Y       L 
Sbjct: 105 --GTPSLFS--PQAIDRLLGDVRARLKLAPDCEITLEANPGTFERNRFRAYRSAGVTRLS 160

Query: 293 LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352
           + VQS +D  L ++ R H   +    ++   S       + D +   PG+T +   A + 
Sbjct: 161 VGVQSFNDEHLTALGRVHDRAQAIAAVEEAASAFD--TFNLDLMYALPGQTLEHLEADLS 218

Query: 353 LVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE-NVKAERLLCLQKKLREQQVSFND 407
               +       +  +    T  +     + E ++    L  + ++  EQ +S  +
Sbjct: 219 QALALAPPHISVYHLTIEPNTWFAKFPPTLPEDDIAYAMLDRITERTGEQGMSRYE 274


>gi|312897518|ref|ZP_07756938.1| radical SAM protein family [Megasphaera micronuciformis F0359]
 gi|310621370|gb|EFQ04910.1| radical SAM protein family [Megasphaera micronuciformis F0359]
          Length = 349

 Score = 54.2 bits (129), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 43/232 (18%), Positives = 75/232 (32%), Gaps = 28/232 (12%)

Query: 185 GCDKFCTFCVVPYTRG-IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
           GC   C FC      G  E+          A      G            A+ G      
Sbjct: 14  GCPHRCVFCDQHTVTGQAEVPTGADTAQKIATYTRKKGAAYEV-------AFYGGSFTAV 66

Query: 244 KCTFSDLL-----YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
             T  + L      +L    GLV     ++ P  + D ++         +  + L VQS 
Sbjct: 67  SATLQEELLQPAYEALQN--GLVSAIRCSTRPDCIDDEVLNRLKRYG--VRTVELGVQSM 122

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
            DR+L++  R HT+ +  + +  ++       I    + G PGE      AT + V  + 
Sbjct: 123 DDRVLQAAKRGHTSEDVYRAVSLLKKS--GFTIGLQLMPGLPGEDWTSLTATTEAVCNLE 180

Query: 359 YAQAFSFKYSPRLGTPGSNMLEQ-------VDENVKAERLLCLQKKLREQQV 403
                 +       T   +M  +       +DE V+  R   +++      +
Sbjct: 181 PDFTRIYPVVVIANTELEDMYRRGHYEPLTIDEAVR--RSAYMKELFLRHHI 230


>gi|302385297|ref|YP_003821119.1| oxygen-independent coproporphyrinogen III oxidase [Clostridium
           saccharolyticum WM1]
 gi|302195925|gb|ADL03496.1| oxygen-independent coproporphyrinogen III oxidase [Clostridium
           saccharolyticum WM1]
          Length = 407

 Score = 54.2 bits (129), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 32/207 (15%), Positives = 80/207 (38%), Gaps = 15/207 (7%)

Query: 186 CDKFCTFC---VVPYTRGIEISRS---LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
           C + C +C     P  R ++   +   + ++  ++ K+ +  V  + + G   +    + 
Sbjct: 16  CVRKCAYCDFLSFPGNRQMQREYTEKLIEEIQCQSAKVREYQVISVFIGGGTPSILNIED 75

Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
           +       ++    L + +          +P  ++   +  + +    +  + + +QS  
Sbjct: 76  MSAVFHALTNGFEILPDAE-----ITMEVNPGTVTAESLSCYREAG--VNRISMGLQSAD 128

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
           D+ L  + R HT  E+ +   R+R    D  ++ D I   PG+T + ++ T+  V  +  
Sbjct: 129 DKELGYLGRIHTYDEFLKSYQRVRMAGFD-NVNVDLISAIPGQTVESWKNTLKKVTMLKP 187

Query: 360 AQAFSFKYSPRLGTPGSNMLEQVDENV 386
               ++      GTP  +   +    V
Sbjct: 188 EHISAYSLIVEEGTPYYDRYGE-PVEV 213


>gi|294794606|ref|ZP_06759742.1| radical SAM domain protein [Veillonella sp. 3_1_44]
 gi|294454936|gb|EFG23309.1| radical SAM domain protein [Veillonella sp. 3_1_44]
          Length = 575

 Score = 54.2 bits (129), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 41/267 (15%), Positives = 97/267 (36%), Gaps = 40/267 (14%)

Query: 175 GVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA 234
           G    + +  GC + C FC+  Y   +   R L  + +   +    G     +       
Sbjct: 247 GAMYIIEVARGCGRHCRFCMAGYCFRVPRVRPLDILKEGVERAEKLGKKVGLMGA----- 301

Query: 235 WRGKGLDGEKCTFSDLLYSLSEIK-GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHL 293
                       + ++   ++ I+   +R    +     ++  ++    D       + +
Sbjct: 302 --------AISDYPEVDELVNYIRSKDMRYSCASLRADSLTQAVVDGLADSGQ--KTITI 351

Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA---- 349
             ++GS+R+ + +N+  +  E+ Q    + +      +    ++G P ETD+D  A    
Sbjct: 352 APETGSERLRRVINKGIS-EEHLQNAATLSAKSGIQHMRLYIMIGLPTETDEDIEAIVGL 410

Query: 350 ---TMDLVDKIGYA---QAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQV 403
              T   + ++G           + P+  TP   M    ++    ++L  ++K L++   
Sbjct: 411 AERTQAHMAEVGCKGRLTLSINPFIPKPFTPFQWMAMD-NQKTVEKKLQYIKKALQKN-- 467

Query: 404 SFNDACVGQIIEVLIEKHGKEKGKLVG 430
                   + IEVL+E    ++  + G
Sbjct: 468 --------RRIEVLVE--SPKEAYIQG 484


>gi|229525012|ref|ZP_04414417.1| coproporphyrinogen III oxidase oxygen-independent [Vibrio cholerae
           bv. albensis VL426]
 gi|229338593|gb|EEO03610.1| coproporphyrinogen III oxidase oxygen-independent [Vibrio cholerae
           bv. albensis VL426]
          Length = 480

 Score = 54.2 bits (129), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 52/298 (17%), Positives = 105/298 (35%), Gaps = 24/298 (8%)

Query: 127 VVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVD----GGYNRKRGVTAFLTI 182
           VV  Q       +L++  +      +  +  +  E  +I D         +R ++ ++ I
Sbjct: 23  VVPSQQIVWDQAILDKYNYSGPRYTSYPTAVEFHEAFTIADFDMACTQYPERPLSLYIHI 82

Query: 183 QEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG 242
              C K C +C          S    + +D     I        L+G+NV         G
Sbjct: 83  PF-CHKLCYYCGCNKVITRH-SHKADEYLDVLEHEIRQ--RASLLIGRNVTQLH---FGG 135

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL-------MPYLHLPV 295
              TF      +S +  L+R  +  +   ++S  +      L+VL          + + V
Sbjct: 136 GTPTF-LTNAQISRLMTLLRSEFHFADEAEISIEIDPREIQLEVLDHLRQEGFNRVSIGV 194

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS-DFIVGFPGETDDDFRATMDLV 354
           Q  +  + K +NR         +++R + +      ++ D I G P +T   F  T+  V
Sbjct: 195 QDFNKEVQKLVNREQDEQFIFDLVERAKQL--GFRSTNLDLIYGLPKQTAATFAQTLQQV 252

Query: 355 DKIGYAQAFSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVG 411
             +   +   F Y+       +   +++ D     E+L  LQ+ +     +     +G
Sbjct: 253 LTMQPGRLSVFNYAHMPQLFAAQRKIKEADLPAAEEKLAILQQTITTLTGAGYQ-FIG 309


>gi|218129306|ref|ZP_03458110.1| hypothetical protein BACEGG_00883 [Bacteroides eggerthii DSM 20697]
 gi|317475275|ref|ZP_07934541.1| TIGR01212 family radical SAM protein [Bacteroides eggerthii
           1_2_48FAA]
 gi|217988483|gb|EEC54804.1| hypothetical protein BACEGG_00883 [Bacteroides eggerthii DSM 20697]
 gi|316908529|gb|EFV30217.1| TIGR01212 family radical SAM protein [Bacteroides eggerthii
           1_2_48FAA]
          Length = 308

 Score = 54.2 bits (129), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 40/205 (19%), Positives = 71/205 (34%), Gaps = 17/205 (8%)

Query: 188 KFCTFCVVPYTRGIEISRSLSQV---VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK 244
             CT+C           R+   +   ++E ++   +   E+  L             GE 
Sbjct: 43  GGCTYCNNQTFNPDYC-RTEKPICLQLEEGKRFFAHKYPEMKYLA---YFQAYTNTYGEL 98

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHL----PVQSGSD 300
            +          ++G+V L   T  P  M D L++    L+ +  +  L     ++S  D
Sbjct: 99  ESLKRKYEEALSVEGVVGLVIGT-RPDCMPDDLLRY---LESINKHTFLLVEYGIESTCD 154

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
             L+ +NR HT       +   R+    I      I+G PGET     A    + ++   
Sbjct: 155 ETLRRINRGHTFQTTADAV--CRTAACGILTGGHVILGLPGETRQSIVAQAHDLSQLPLT 212

Query: 361 QAFSFKYSPRLGTPGSNMLEQVDEN 385
                +     GT  +   EQ  E+
Sbjct: 213 TLKIHQLQLIRGTRMALEYEQNPED 237


>gi|20807433|ref|NP_622604.1| coproporphyrinogen III oxidase [Thermoanaerobacter tengcongensis
           MB4]
 gi|20515956|gb|AAM24208.1| Coproporphyrinogen III oxidase and related FeS oxidoreductases
           [Thermoanaerobacter tengcongensis MB4]
          Length = 375

 Score = 54.2 bits (129), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 29/203 (14%), Positives = 73/203 (35%), Gaps = 19/203 (9%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQ----VVDEARKLIDNGVCEITLLGQNVNAWRGKGLD 241
           C K C +C      G E    +      +++E +   D     I        +    G  
Sbjct: 13  CKKKCYYCDFNSYAGYE--HLMEDYLKALLEEVKTYSDRSFRVI--------SVYIGGGT 62

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLI--KAHGDLD-VLMPYLHLPVQSG 298
                 S +   LSE+     +        +++  L+            +  + + +Q+ 
Sbjct: 63  PNFLPPSHVERVLSEVHKDYNVSRDAEITIEVNPGLLTEDKLKIYKINGINRISMGLQAF 122

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
            +R+L+ + R HTA ++ +    +R    ++ +  D I   P ++ ++++ T+  V ++ 
Sbjct: 123 QNRLLEYIGRIHTAEDFLENYALVRKYFDNVNV--DLIYALPTQSFEEWQETLTKVVELK 180

Query: 359 YAQAFSFKYSPRLGTPGSNMLEQ 381
                ++       T    + ++
Sbjct: 181 PEHISTYSLILEENTLFGRLYKE 203


>gi|170718942|ref|YP_001784109.1| coproporphyrinogen III oxidase [Haemophilus somnus 2336]
 gi|168827071|gb|ACA32442.1| oxygen-independent coproporphyrinogen III oxidase [Haemophilus
           somnus 2336]
          Length = 455

 Score = 54.2 bits (129), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 41/243 (16%), Positives = 84/243 (34%), Gaps = 10/243 (4%)

Query: 173 KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITL-LGQN 231
            R ++ ++ I   C K C FC    T      + +   +D   K I          +   
Sbjct: 48  TRPLSLYVHIPF-CHKLCYFCACNKTITRHQHK-VEIYLDYLEKEIQTRAPLFRHRIATQ 105

Query: 232 VNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL 291
           ++   G      +   + L+  L E   +      +         L        +    +
Sbjct: 106 IHWGGGTPTYLSEQQSARLMQMLKENFTISDKAEISIEMDPREIELSMLDHLYKIGFNRI 165

Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS-DFIVGFPGETDDDFRAT 350
            + VQ  +  + K++NR       R+++ R R +      ++ D I G P +T + F  T
Sbjct: 166 SMGVQDFNKDVQKAVNREQDEEFVRELLIRAREL--GFRSTNLDLIYGLPFQTVESFMFT 223

Query: 351 MDLVDKIGYAQAFSFKYSPRLGTPG--SNMLEQVDENVKAERLLCLQKKLREQQVSFNDA 408
           +  V ++   +   F Y+         + + ++ D      +L  LQK +     + N  
Sbjct: 224 LHKVIELNPDRLSVFNYAHLPSRFAGQAKIKDK-DLPTPETKLTILQKTIETLGQA-NYR 281

Query: 409 CVG 411
            +G
Sbjct: 282 FIG 284


>gi|113460617|ref|YP_718683.1| coproporphyrinogen III oxidase [Haemophilus somnus 129PT]
 gi|112822660|gb|ABI24749.1| coproporphyrinogen III oxidase, anaerobic [Haemophilus somnus
           129PT]
          Length = 455

 Score = 54.2 bits (129), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 41/243 (16%), Positives = 84/243 (34%), Gaps = 10/243 (4%)

Query: 173 KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITL-LGQN 231
            R ++ ++ I   C K C FC    T      + +   +D   K I          +   
Sbjct: 48  TRPLSLYVHIPF-CHKLCYFCACNKTITRHQHK-VEIYLDYLEKEIQTRAPLFRHRIATQ 105

Query: 232 VNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL 291
           ++   G      +   + L+  L E   +      +         L        +    +
Sbjct: 106 IHWGGGTPTYLSEQQSARLMQMLKENFTISDKAEISIEMDPREIELSMLDHLYKIGFNRI 165

Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS-DFIVGFPGETDDDFRAT 350
            + VQ  +  + K++NR       R+++ R R +      ++ D I G P +T + F  T
Sbjct: 166 SMGVQDFNKDVQKAVNREQDEEFVRELLIRAREL--GFRSTNLDLIYGLPFQTVESFMFT 223

Query: 351 MDLVDKIGYAQAFSFKYSPRLGTPG--SNMLEQVDENVKAERLLCLQKKLREQQVSFNDA 408
           +  V ++   +   F Y+         + + ++ D      +L  LQK +     + N  
Sbjct: 224 LHKVIELNPDRLSVFNYAHLPSRFAGQAKIKDK-DLPTPETKLTILQKTIETLGQA-NYR 281

Query: 409 CVG 411
            +G
Sbjct: 282 FIG 284


>gi|223986171|ref|ZP_03636192.1| hypothetical protein HOLDEFILI_03502 [Holdemania filiformis DSM
           12042]
 gi|223961879|gb|EEF66370.1| hypothetical protein HOLDEFILI_03502 [Holdemania filiformis DSM
           12042]
          Length = 552

 Score = 54.2 bits (129), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 27/195 (13%), Positives = 60/195 (30%), Gaps = 11/195 (5%)

Query: 179 FLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK 238
           +L    GC   C +C+           S + V+ +   L +  V ++  L         +
Sbjct: 171 YLETSRGCPYHCAYCL-SSADNRVRMFSEAYVLRQLAPLAERTVKQVKFLD--------R 221

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
             +        +   +  +   +  ++           L       D       + VQS 
Sbjct: 222 TYNVMPERALRIARFIETLPPSINFQFEVVADTISEAMLDFFEQKADPARYRFEIGVQSL 281

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           + + L++++RR       ++  R+           D I G P E    F  + + +  + 
Sbjct: 282 NSKTLEAVDRRQDNQRLLEVTSRLLKR--GYICHLDLIAGLPYEDRASFEQSYNGLFAVH 339

Query: 359 YAQAFSFKYSPRLGT 373
            ++          GT
Sbjct: 340 PSELQVGILKLLKGT 354


>gi|222150803|ref|YP_002559956.1| lipoic acid synthetase [Macrococcus caseolyticus JCSC5402]
 gi|254809193|sp|B9EAJ9|LIPA_MACCJ RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|222119925|dbj|BAH17260.1| lipoic acid synthetase [Macrococcus caseolyticus JCSC5402]
          Length = 304

 Score = 54.2 bits (129), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 29/182 (15%), Positives = 61/182 (33%), Gaps = 11/182 (6%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V      E+   L++    A  +    +  + +        R    DG   
Sbjct: 68  CTRACRFCAVKTGLPNEL--DLNEPERVAESVRLMNLKHVVITAV----ARDDLKDGGAH 121

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
            +++ +  + E+     +    S      +           ++ +    V+  +      
Sbjct: 122 VYAETIRKVREVNPYTTIEVLPSDMGGSIENWETLMAAKPDILNHNIETVRRLTP----R 177

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           +  R T     +++ R + + PDI   S  +VG  GET ++    MD +           
Sbjct: 178 VRARATYDRSLEVLRRSKELYPDIPTKSSLMVGL-GETTEEIYEVMDDLRANDVDIMTIG 236

Query: 366 KY 367
           +Y
Sbjct: 237 QY 238


>gi|322833907|ref|YP_004213934.1| lipoic acid synthetase [Rahnella sp. Y9602]
 gi|321169108|gb|ADW74807.1| lipoic acid synthetase [Rahnella sp. Y9602]
          Length = 321

 Score = 54.2 bits (129), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 30/183 (16%), Positives = 65/183 (35%), Gaps = 12/183 (6%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V    G   +   ++    A+ + D G+  + +   +    R    DG   
Sbjct: 94  CTRRCPFCDV--AHGRPTAPDTNEPEKLAQTISDMGLRYVVITSVD----RDDLRDGGAQ 147

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAH-GDLDVLMPYLHLPVQSGSDRILK 304
            F+D + ++      +++       R   D  ++        +  +    V     R+ +
Sbjct: 148 HFADCITAIRAKNPTIKIETLVPDFRGRMDRALEILNASPPDVFNHNLENV----PRVYR 203

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
            +           ++ R +   P+I   S  +VG  GET+++    M  + + G      
Sbjct: 204 QVRPGANYEWSLTLLQRFKEAHPEIPTKSGLMVGL-GETNEEIIEVMRDLRRHGVTMLTL 262

Query: 365 FKY 367
            +Y
Sbjct: 263 GQY 265


>gi|15894357|ref|NP_347706.1| Fe-S oxidoreductase [Clostridium acetobutylicum ATCC 824]
 gi|15023985|gb|AAK79046.1|AE007622_8 Fe-S oxidoreductase [Clostridium acetobutylicum ATCC 824]
 gi|325508485|gb|ADZ20121.1| Fe-S oxidoreductase [Clostridium acetobutylicum EA 2018]
          Length = 470

 Score = 54.2 bits (129), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 80/222 (36%), Gaps = 27/222 (12%)

Query: 147 KRVVDTDYSVED-KFERLSIVDGGYNRKRGVTAFLTI--QEGCDKF-----CTFCVVPYT 198
           K     DYS+ D K  +  + +  +     +  +L +   +GC        C FC     
Sbjct: 165 KNAPKLDYSIVDFKPYQKLLNESNFTNPNPINNYLRVYSHKGCGNRKNSVGCVFCG--RA 222

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITL-LGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257
                 +S  +  ++ +   D    +    +G +                   +  ++EI
Sbjct: 223 DKGVRFKSPEKFWEDIKICADEFKADYIFDVGDDFLYNHDW------------VSKVAEI 270

Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVL-MPYLHLPVQSGSDRILKSMNRRHT-AYEY 315
           K  +R ++        +   +     L  + +  + +  +SG + +L+  N+R T     
Sbjct: 271 KPDIRKKFELGIFARANRVNLSIAKKLKKIGVTDVVIGFESGDEEVLRRCNKRDTSTETS 330

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
               D +      I I++ F++G PGE  +  + T+   +K+
Sbjct: 331 LIAADAL--ATAGIDITASFVLGLPGENSESLKKTIKCAEKV 370


>gi|22299802|ref|NP_683049.1| hypothetical protein tlr2259 [Thermosynechococcus elongatus BP-1]
 gi|22295986|dbj|BAC09811.1| tlr2259 [Thermosynechococcus elongatus BP-1]
          Length = 863

 Score = 54.2 bits (129), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 55/324 (16%), Positives = 102/324 (31%), Gaps = 32/324 (9%)

Query: 110 AQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGG 169
           A    +++L     V  V  PQ Y R  +   +             V       +I    
Sbjct: 189 AGLSRQDLLLDLAQVPGVYVPQFYDRQGDGSVKPNRPDVPARVLRRVATPMPHYAIGLVP 248

Query: 170 YNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLL 228
           Y         + I+ GC + C FC            +  +V+      +   G  E +LL
Sbjct: 249 YVETVHDRLTVEIRRGCTRGCRFCQPGMLTRPARDVAPEEVIAAIETGMRATGYNEFSLL 308

Query: 229 GQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLM 288
             + + +      G +        ++S            S   D  D  I          
Sbjct: 309 SLSCSDYLALPAVGVEIKNRLQNENIS--------LSLPSQRVDRFDENIAHIVGGTR-Q 359

Query: 289 PYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDD-- 346
             L    ++G+ R+   +N+  T  E  + +        D  I   F++G PGETD D  
Sbjct: 360 GGLTFAPEAGTQRLRDIINKGLTNEELLRGVKTAYEQGWD-KIKLYFMIGLPGETDADVL 418

Query: 347 -FRATMDLVDK---------IGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLC--- 393
               T+  + +         + +       ++P+  TP         E ++ + LL    
Sbjct: 419 GIAETIRWLRRECWIKGRKPLSF-NLTISNFTPKPHTPFQWHAVSTSEFLRKQELLKAEF 477

Query: 394 -----LQKKLREQQVSFNDACVGQ 412
                L+    + ++S  +  VG+
Sbjct: 478 RTIKGLKANFTDVRISAMEDFVGR 501


>gi|296103406|ref|YP_003613552.1| lipoyl synthase [Enterobacter cloacae subsp. cloacae ATCC 13047]
 gi|295057865|gb|ADF62603.1| lipoyl synthase [Enterobacter cloacae subsp. cloacae ATCC 13047]
          Length = 321

 Score = 54.2 bits (129), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 31/183 (16%), Positives = 66/183 (36%), Gaps = 12/183 (6%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V    G  ++   ++    A+ + D  +  + +   +    R    DG   
Sbjct: 94  CTRRCPFCDV--AHGRPVAPDANEPQKLAQTIADMALRYVVITSVD----RDDLRDGGAQ 147

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAH-GDLDVLMPYLHLPVQSGSDRILK 304
            F+D + ++ E    +++       R   D  +         +  +    V     R+ +
Sbjct: 148 HFADCITAIREKSPNIKIETLVPDFRGRMDRALDILTATPPDVFNHNLENV----PRLYR 203

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
            +          ++++R +   P I   S  +VG  GET+D+    M  + + G      
Sbjct: 204 QVRPGADYNWSLKLLERFKEAHPHIPTKSGLMVGL-GETNDEIIEVMRDLRRHGVTMLTL 262

Query: 365 FKY 367
            +Y
Sbjct: 263 GQY 265


>gi|260775401|ref|ZP_05884298.1| hypothetical protein VIC_000775 [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260608582|gb|EEX34747.1| hypothetical protein VIC_000775 [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 319

 Score = 54.2 bits (129), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 41/199 (20%), Positives = 64/199 (32%), Gaps = 13/199 (6%)

Query: 181 TIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL 240
           TI  G    CTFC V      E       ++++ +            L            
Sbjct: 39  TIGRG---GCTFCNVASFADEE--TQTKSILEQLKDRAGEVHRAKKYLA---YFQAYTST 90

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYT--TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
             E  T   +     +   +V L          D    L+  +        +L L +Q+ 
Sbjct: 91  YAEVQTLKSMYEQAIKAADIVGLCVGTRPDCVPDAVLELLSGYVREG-FEIWLELGLQTA 149

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           ++  LK +NR H    Y  I  R R++   I + +  IVG P ET  D   TM  V  +G
Sbjct: 150 NNDTLKRINRGHDFNCYASIAKRARAL--GIKVCTHLIVGLPKETHQDNIDTMRKVIDVG 207

Query: 359 YAQAFSFKYSPRLGTPGSN 377
                        G+  + 
Sbjct: 208 TDGIKLHSLHIVEGSTMAK 226


>gi|167037805|ref|YP_001665383.1| coproporphyrinogen III oxidase [Thermoanaerobacter pseudethanolicus
           ATCC 33223]
 gi|167040705|ref|YP_001663690.1| coproporphyrinogen III oxidase [Thermoanaerobacter sp. X514]
 gi|300914746|ref|ZP_07132062.1| oxygen-independent coproporphyrinogen III oxidase
           [Thermoanaerobacter sp. X561]
 gi|307724020|ref|YP_003903771.1| oxygen-independent coproporphyrinogen III oxidase
           [Thermoanaerobacter sp. X513]
 gi|320116224|ref|YP_004186383.1| oxygen-independent coproporphyrinogen III oxidase
           [Thermoanaerobacter brockii subsp. finnii Ako-1]
 gi|166854945|gb|ABY93354.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Thermoanaerobacter sp. X514]
 gi|166856639|gb|ABY95047.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|300889681|gb|EFK84827.1| oxygen-independent coproporphyrinogen III oxidase
           [Thermoanaerobacter sp. X561]
 gi|307581081|gb|ADN54480.1| oxygen-independent coproporphyrinogen III oxidase
           [Thermoanaerobacter sp. X513]
 gi|319929315|gb|ADV80000.1| oxygen-independent coproporphyrinogen III oxidase
           [Thermoanaerobacter brockii subsp. finnii Ako-1]
          Length = 375

 Score = 54.2 bits (129), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 35/211 (16%), Positives = 71/211 (33%), Gaps = 20/211 (9%)

Query: 186 CDKFCTFCVVPYTRGI--EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
           C + C +C      G        +  ++ E                 NV +    G    
Sbjct: 13  CKRKCYYCDFNSYAGYDYLFDDYIRALLMEIESNSTKDY--------NVVSVYIGGGTPN 64

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHG---DLDVLMPYLHLPVQSGSD 300
               S +   L  +    ++        +M+  LI         D  +  + + +Q+  +
Sbjct: 65  LLPPSYIEKILKSVFKNYKILDGCEITIEMNPGLITEEKLKIYKDNGINRVSIGLQAFQN 124

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
           R+LK + R HT  E+    + ++    +I I  D +   P +T  +++ T+  V K+   
Sbjct: 125 RLLKYIGRIHTVEEFFGNYELVKKFFDNINI--DLMYALPTQTFKEWQETLKEVVKLQPT 182

Query: 361 QAFSFKYSPRLGTPGSNMLEQ-----VDENV 386
              ++       T    + E+     VDE  
Sbjct: 183 HVSTYSLILEPNTSFYRLYEKGQLPIVDEEE 213


>gi|153006604|ref|YP_001380929.1| radical SAM domain-containing protein [Anaeromyxobacter sp.
           Fw109-5]
 gi|152030177|gb|ABS27945.1| Radical SAM domain protein [Anaeromyxobacter sp. Fw109-5]
          Length = 593

 Score = 54.2 bits (129), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 64/166 (38%), Gaps = 17/166 (10%)

Query: 182 IQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD 241
           +  GC   C FC   + +       L  +  EARK ++ G+    L+G + + + G    
Sbjct: 253 VARGCLWGCRFCAAGFVQRPYREVDLETLRAEARKGVERGLRLG-LVGPDTSDYTGLDP- 310

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
                   L   + E+ G      ++     ++  L             + +  ++G++R
Sbjct: 311 --------LTCFIGELGGTFSP--SSLRVDAITPELSGRMAAGGE--RSITIAPEAGTER 358

Query: 302 ILKSMNRRHTAYEYRQIIDR-IRSVRPDIAISSDFIVGFPGETDDD 346
           + + +N+  T  +  Q  +  +      + +   F+ G P ETD+D
Sbjct: 359 MRRVINKDFTDDQIVQAAEHALSQGMQHVKMY--FMCGLPTETDED 402


>gi|221134234|ref|ZP_03560539.1| lipoyl synthase [Glaciecola sp. HTCC2999]
          Length = 328

 Score = 54.2 bits (129), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 35/240 (14%), Positives = 81/240 (33%), Gaps = 20/240 (8%)

Query: 115 EEILRRSPIVNVVVGPQTYYRLPELL--------ERARFGKRVVDTDYSVEDKFERLSIV 166
           +E ++  P+  +    +   R PE +        E+    K+ +  + ++    E  S  
Sbjct: 15  DEKVKHIPVTIIPTEKEAMLRKPEWIKIKLPRTTEKVEKIKQTL-RENNLHSVCEEASCP 73

Query: 167 DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEIT 226
           +       G   F+ + + C + C FC V    G  +  S  + +  A  +    +  + 
Sbjct: 74  NLSECFNHGTATFMILGDICTRRCPFCDV--AHGKPLPPSAEEPLKLATTIAKMDLKYVV 131

Query: 227 LLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGD-LD 285
           +   +    R    DG    F D + ++ E     ++       R   D  ++     L 
Sbjct: 132 ITSVD----RDDLRDGGAQHFVDCINAIREHSPNTKIEVLVPDFRGRMDRALEILATGLP 187

Query: 286 VLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDD 345
            +  +    +     R+ +             ++ + ++  P I   S  ++G   E D+
Sbjct: 188 DVFNHNLETI----PRLYRECRPGANYQWSLDLLKKFKAAHPHIPTKSGLMMGMGEEVDE 243


>gi|332160851|ref|YP_004297428.1| lipoyl synthase [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
 gi|325665081|gb|ADZ41725.1| lipoyl synthase [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
 gi|330863380|emb|CBX73502.1| lipoyl synthase [Yersinia enterocolitica W22703]
          Length = 321

 Score = 54.2 bits (129), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 43/257 (16%), Positives = 85/257 (33%), Gaps = 17/257 (6%)

Query: 118 LRRSPIVNVVVGPQTYYRLPELLERAR-------FGKRVVDTDYSVEDKFERLSIVDGGY 170
           +   PI  VV   Q   R PE ++           G +       +    E  S  +   
Sbjct: 19  MALIPIKTVVTERQELLRKPEWMKIKLPADSSRIQGIKAAMRKNGLHSVCEEASCPNLSE 78

Query: 171 NRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQ 230
               G   F+ +   C + C FC V    G  ++   ++    A+ + D  +  + +   
Sbjct: 79  CFNHGTATFMILGAICTRRCPFCDV--AHGRPVTPDANEPEKLAQTIKDMALRYVVITSV 136

Query: 231 NVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY 290
           +    R    DG    F+D + ++      +++       R   D  +          P 
Sbjct: 137 D----RDDLRDGGAQHFADCISAIRAKNPTIKIETLVPDFRGRMDRALDILTVTP---PD 189

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
           +         R+ + +          ++++R +   PDI   S  +VG  GET+ +    
Sbjct: 190 VFNHNLENVPRVYRQVRPGANYEWSLKLLERFKEAHPDIPTKSGLMVGL-GETNAEIVEV 248

Query: 351 MDLVDKIGYAQAFSFKY 367
           M  + + G       +Y
Sbjct: 249 MRDLRRHGVTMLTLGQY 265


>gi|291527972|emb|CBK93558.1| radical SAM protein, TIGR01212 family [Eubacterium rectale M104/1]
          Length = 302

 Score = 54.2 bits (129), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 32/202 (15%), Positives = 70/202 (34%), Gaps = 13/202 (6%)

Query: 189 FCTFCVV--PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLG--QNVNAWRGKGLDGEK 244
            C +C          + S S+ + +  A++ + +       +   Q         +D  +
Sbjct: 40  GCLYCSAGGSGDFAADRSLSIKEQLSAAKEKVASKSSCEHFIAYFQAFTNTY-APVDYLR 98

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMP-YLHLPVQSGSDRIL 303
             F + +         V +    +     S  +     +L+ + P ++ L +Q+     L
Sbjct: 99  RIFYEAIE-----DPSVAVLSIGTRTDCFSTEIYDLLSELNEIKPVWVELGLQTIHRSTL 153

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
            +MN      ++  + D +R     I + +  I+G P ET      ++D V K G     
Sbjct: 154 DAMNTHTCVEDFIIVADELRRR--GIKVIAHLILGLPNETRGMMLESVDFVAKSGIFGVK 211

Query: 364 SFKYSPRLGTPGSNMLEQVDEN 385
                   GTP +++  +    
Sbjct: 212 LQLLHVLKGTPLADIYIKHPFE 233


>gi|284009244|emb|CBA76348.1| lipoic acid synthetase [Arsenophonus nasoniae]
          Length = 321

 Score = 54.2 bits (129), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 31/182 (17%), Positives = 65/182 (35%), Gaps = 10/182 (5%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V    G   +   ++    A  + D G+  + +   +    R    DG   
Sbjct: 94  CTRRCPFCDV--AHGRPNAPDPNEPAKLAETIKDMGLKYVVITSVD----RDDLRDGGAQ 147

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
            F+D + ++ +    +++       R   D  +          P +         RI + 
Sbjct: 148 HFADCITAIRKKNPNIKIETLVPDFRGRMDRALTILATAP---PDVFNHNLENVPRIYRQ 204

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           +          Q++ + + + P+I   S  +VG  GET+++    M  + + G       
Sbjct: 205 VRPGANYDWSLQLLAKFKQMHPEIPTKSGLMVGL-GETNEEIIDVMRDLRRHGVTMLTLG 263

Query: 366 KY 367
           +Y
Sbjct: 264 QY 265


>gi|257469997|ref|ZP_05634089.1| oxygen-independent coproporphyrinogen III oxidase [Fusobacterium
           ulcerans ATCC 49185]
 gi|317064223|ref|ZP_07928708.1| oxygen-independent coproporphyrinogen III oxidase [Fusobacterium
           ulcerans ATCC 49185]
 gi|313689899|gb|EFS26734.1| oxygen-independent coproporphyrinogen III oxidase [Fusobacterium
           ulcerans ATCC 49185]
          Length = 422

 Score = 54.2 bits (129), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 44/209 (21%), Positives = 72/209 (34%), Gaps = 13/209 (6%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           CDK C+FC        +I  SL           D                   G      
Sbjct: 58  CDKICSFC---NLNRKQIDGSLDSYAQYIADEFDKYGQTNYFKKSEFEVIFFGGGTPTVY 114

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY----LHLPVQSGSDR 301
               L   L  IK  V L        + +   +     L+V+M Y    L + +Q+ SDR
Sbjct: 115 KPHQLEIILESIKKNVTLAEDYEFTFETTLHNL-TEEKLEVMMKYGVNRLSVGIQTFSDR 173

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
                NR +   E  + + ++++      +  D I  FP ET ++      LV ++  + 
Sbjct: 174 GRVFYNRTYGKEEVVERLKKLKAFFKG-DVCVDIIYNFPDETLEEVIEDARLVKELELSS 232

Query: 362 AFSFKYSPRLGTPGSNMLEQVD-ENVKAE 389
           A  +      G   S + + ++ E VK E
Sbjct: 233 ASFYSLMVHDG---SKLSKDIEAEKVKLE 258


>gi|299822877|ref|ZP_07054763.1| coproporphyrinogen dehydrogenase [Listeria grayi DSM 20601]
 gi|299816406|gb|EFI83644.1| coproporphyrinogen dehydrogenase [Listeria grayi DSM 20601]
          Length = 375

 Score = 54.2 bits (129), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 39/202 (19%), Positives = 75/202 (37%), Gaps = 14/202 (6%)

Query: 186 CDKFCTFCVV--PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
           C+  C +C     +  G  + R +  ++ E   +      E       V    G      
Sbjct: 11  CEHICYYCDFNKVFLEGQPVDRYVDLLIREMEMVTGKQELEPI---DTVFVGGGTPTTLN 67

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPR--DMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
           +   + L  ++  +  L      +      D+S   I+   D    +  + + VQS ++ 
Sbjct: 68  EKQLARLCTAIHRLLPLRENAEFSFEANPGDLSLEKIQVLKDHG--VNRISMGVQSFNNE 125

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
           +LK + R HT  +  Q +D +R +  D  +S D I   P +T  DF+ T+     +    
Sbjct: 126 LLKKIGRIHTTKDVYQSVDNLRKIGLD-NVSIDLIFSLPTQTFADFKDTLT--QALDLDL 182

Query: 362 AFSFKYS--PRLGTPGSNMLEQ 381
                YS      T   N++++
Sbjct: 183 PHYSAYSLIIEPKTIFYNLMQK 204


>gi|186472998|ref|YP_001860340.1| radical SAM domain-containing protein [Burkholderia phymatum
           STM815]
 gi|184195330|gb|ACC73294.1| Radical SAM domain protein [Burkholderia phymatum STM815]
          Length = 513

 Score = 54.2 bits (129), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 48/304 (15%), Positives = 93/304 (30%), Gaps = 36/304 (11%)

Query: 74  EKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTY 133
             A+      L       +  ++  G+  VV    +A    +E L R P V    G    
Sbjct: 98  HSASFTARDMLRHADGALDCVLRGEGEAKVVEL--LAAVASKEDLLRIPGVVTRDGEGPP 155

Query: 134 YRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC 193
               + L++ R  +             + L      +       A +    GC   CTFC
Sbjct: 156 PGFADSLDQIRPAR-------------DLLRHRRKYFIGVLDPCASIEFARGCPWDCTFC 202

Query: 194 VVPYTRGIE-ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLY 252
                 G    SRS   V +E   + + G      +  +V        D       ++  
Sbjct: 203 SAWTFYGRSYRSRSPEVVAEELASIREPG----VFIVDDVAFVH---ADHGMAIGREVER 255

Query: 253 SLSEIKGLVRLRYTTSHPRDM--SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
                 G+ +  Y  +    +  +  + +    L   + Y+ + +++     LK+  +R 
Sbjct: 256 R-----GIHKKYYLETRGDVLLRNKEVFEYWRRLG--LQYMFIGLEAIDAEGLKAFRKRV 308

Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370
              +  + +   RS+   I ++ + I   P    + F         I          +P 
Sbjct: 309 NLDKNFEALAFARSL--GITVAINLIAD-PDWDRERFETIRQWCLDIP-EIVNISVNTPY 364

Query: 371 LGTP 374
            GT 
Sbjct: 365 PGTE 368


>gi|319650423|ref|ZP_08004565.1| lipoyl synthase [Bacillus sp. 2_A_57_CT2]
 gi|317397901|gb|EFV78597.1| lipoyl synthase [Bacillus sp. 2_A_57_CT2]
          Length = 305

 Score = 54.2 bits (129), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 34/214 (15%), Positives = 77/214 (35%), Gaps = 13/214 (6%)

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           ++V ++ +  +I +    R+     F+ + + C + C FC V      E+   L +    
Sbjct: 37  HTVCEEAKCPNIHECWAVRR--TATFMILGDVCTRACRFCAVKTGLPTEL--DLQEPERV 92

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
           A  +    +    +        R    DG    F++ + ++        +    S    +
Sbjct: 93  ADSVALMNLKHAVVTAV----ARDDLKDGGAAVFAETVRAIRRKSPFTTIEVLPSDMGGV 148

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
            D L         ++ +    V+  + R+      ++      + + R + ++PDI   S
Sbjct: 149 YDNLKMLMDARPDILNHNIETVERLTPRV--RARAKYKRS--LEFLKRAKEMQPDIPTKS 204

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
             ++G  GET ++  A MD +           +Y
Sbjct: 205 SLMIGL-GETKEEIIAVMDDLRAHDVDIMTIGQY 237


>gi|312898876|ref|ZP_07758264.1| radical SAM domain protein [Megasphaera micronuciformis F0359]
 gi|310620038|gb|EFQ03610.1| radical SAM domain protein [Megasphaera micronuciformis F0359]
          Length = 481

 Score = 54.2 bits (129), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 40/211 (18%), Positives = 84/211 (39%), Gaps = 20/211 (9%)

Query: 186 CDKFCTFCVVP-YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK 244
           C   C +C  P    G E +  L    ++  + I +     +  G  +++    G  G  
Sbjct: 166 CASHCLYCSFPSRLVGNEKAERLLDFTNKLIEDIQDVQRLCSDTGIRIDSIYVGG--GTP 223

Query: 245 CTFS-----DLLYSLSEIKGLVRLRYTTSHPRDMSDC----LIKAHGDLDVLMPYLHLPV 295
            + S      ++ +L  + G  R     +   D        +++A+G     +  + +  
Sbjct: 224 TSLSVEAVERIMSALQPLAGACREWTVEAGRPDTMTEEKARILRAYG-----VDRISINP 278

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
           Q+    +L ++ RRHT  +  ++ D  R     + I++DFI G PG+T +D R  ++ V 
Sbjct: 279 QTMQQHLLDALGRRHTVRDIYRMFDYCRDAGFSV-INTDFIAGLPGQTVEDMRQNLEAVC 337

Query: 356 KIGYAQAFSFKYSPRLGTPG--SNMLEQVDE 384
           ++          + + G P     + E++  
Sbjct: 338 QLAPENVTIHTLALKKGAPLFRHTLREEIPP 368


>gi|302671636|ref|YP_003831596.1| radical SAM domain-containing protein [Butyrivibrio proteoclasticus
           B316]
 gi|302396109|gb|ADL35014.1| radical SAM domain-containing protein [Butyrivibrio proteoclasticus
           B316]
          Length = 317

 Score = 54.2 bits (129), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 29/202 (14%), Positives = 65/202 (32%), Gaps = 36/202 (17%)

Query: 185 GCDKF--------CTFC--------VVPYTRGIEISRSL--SQVV-------DEARKLID 219
           GC           CTFC              G   +  L    ++        EA+  + 
Sbjct: 27  GCPNRDGTVGTGGCTFCSEGGSGEFAAGAGNGFRRTSDLSDEDIITILDKQISEAKSKVM 86

Query: 220 NGVCEITLLG--QNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCL 277
                   +   Q+     G      K   + +          V +    + P  +   +
Sbjct: 87  KKSDARKFIAYFQSFTNTYGDSEFLRKLYTAAISR------DEVVILSIGTRPDCVGPDI 140

Query: 278 IKAHGDLDVLMP-YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFI 336
           +    +L+ + P ++ L +Q+  D   ++ NR +    +     R++     +++    I
Sbjct: 141 VAMLKELNNIKPVWVELGLQTIHDDTARAFNRGYDLECFIDAYRRLKEA--GLSVIVHLI 198

Query: 337 VGFPGETDDDFRATMDLVDKIG 358
           +G PGE  +D   ++  +  + 
Sbjct: 199 MGLPGENREDMLESVRFLADLR 220


>gi|302389529|ref|YP_003825350.1| Radical SAM domain protein [Thermosediminibacter oceani DSM 16646]
 gi|302200157|gb|ADL07727.1| Radical SAM domain protein [Thermosediminibacter oceani DSM 16646]
          Length = 566

 Score = 54.2 bits (129), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 51/311 (16%), Positives = 106/311 (34%), Gaps = 62/311 (19%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
           + I  GC + C FC+  Y   +   R+L +++D A      G   + L+G  V+ +    
Sbjct: 241 IEISRGCGRNCRFCMAGYCYRVPRVRALEKIIDRAEFASKYG-KRVGLVGAAVSDY---- 295

Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
                    +L   L++    ++   ++     + + L++           L +  ++GS
Sbjct: 296 -----PRIDELSEELTKRG--IKFSVSSLRADTLREPLLRGLSLSGH--KTLTIAPEAGS 346

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSV-RPDIAISSDFIVGFPGETDDDFRATMDLVDKI- 357
            R+   +N+  T       I+  +     +I +   +I+G P ET DD    +D + ++ 
Sbjct: 347 QRLRNVINKGLTEDHVLDSINMAQKFGIKNIKLY--YIIGLPTETSDDIEEMIDFLTRVK 404

Query: 358 ----------GYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQK----------- 396
                     G        + P+  TP           V  E+L  L+            
Sbjct: 405 EKMVSSGNKTGLLTVSINPFIPKPFTP-FQWFGMEPVPVLEEKLRKLKSSLKPKGIKVLY 463

Query: 397 ---KLREQQVSFNDA------CVGQII----------EVLIEKHGKEKGKLVGRSPWLQS 437
              ++ + Q +           + ++            V +E    E         +   
Sbjct: 464 ESPRVSQIQAALARGDRTTAMMLYKVHLEGGDLSRFRRVWVEGKNVE---YYAHREFDLD 520

Query: 438 VVLNSKNHNIG 448
           VVL  ++ +IG
Sbjct: 521 VVLPWEHIDIG 531


>gi|260596160|ref|YP_003208731.1| hypothetical protein CTU_03680 [Cronobacter turicensis z3032]
 gi|260215337|emb|CBA27318.1| Uncharacterized protein yhcC [Cronobacter turicensis z3032]
          Length = 311

 Score = 54.2 bits (129), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 2/83 (2%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +L L +QS  D+ L  +NR H    Y+    R R+    + + +  IVG PGET  D   
Sbjct: 141 WLELGLQSAKDKTLHRINRGHDFACYQDTARRARAR--GLKVCTHLIVGLPGETRLDALV 198

Query: 350 TMDLVDKIGYAQAFSFKYSPRLG 372
           +++ V + G             G
Sbjct: 199 SLERVVETGVDGIKLHPLHIVEG 221


>gi|288932121|ref|YP_003436181.1| radical SAM protein [Ferroglobus placidus DSM 10642]
 gi|288894369|gb|ADC65906.1| Radical SAM domain protein [Ferroglobus placidus DSM 10642]
          Length = 546

 Score = 54.2 bits (129), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 39/239 (16%), Positives = 78/239 (32%), Gaps = 30/239 (12%)

Query: 144 RFGKRVVDTDYSVEDKFERL-SIVDGGYNRKRGVTAFLTIQEGCDK-FCTFCVVPYTRGI 201
           R G  V D+  +  +KF  L + V   ++    V   +   +GC    C+FC+    R  
Sbjct: 125 RLGGEVKDSSRNFVNKFAVLGAEVVKQHSDYPNVICEIETYKGCYWGRCSFCI---ERIH 181

Query: 202 EIS-RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
            IS R    V+ E   L + GV    L  Q            +    +    +L      
Sbjct: 182 RISMREPRWVIKEIETLYNQGVRYFRLGNQTDFFTYLGDFSKDIPKPN--PEALKNFHRE 239

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLD---------VLMPYL-----HLPVQSGSDRILKSM 306
           +  R        + +   K               ++            ++S  +++++  
Sbjct: 240 IWRRCPKIKTLHLDNVNPKTIAAYPEESKEIIKTIVCYQTPGNVAAFGLESADEKVIERN 299

Query: 307 NRRHTAYEYRQIIDRIRSV--------RPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
           +   T  E    I+ +            P      +F++G  GET + F    + ++++
Sbjct: 300 DLLATPDEVLFAIELMNRYGRFVGYNGLPYFLPGINFVIGLKGETKETFEKNYEFLEEV 358


>gi|251790550|ref|YP_003005271.1| lipoyl synthase [Dickeya zeae Ech1591]
 gi|247539171|gb|ACT07792.1| lipoic acid synthetase [Dickeya zeae Ech1591]
          Length = 321

 Score = 54.2 bits (129), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 33/182 (18%), Positives = 68/182 (37%), Gaps = 10/182 (5%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V    G  ++   ++    A+ + D G+  + +   +    R    DG   
Sbjct: 94  CTRRCPFCDV--AHGRPLTPDANEPEKLAQTIHDMGLRYVVITSVD----RDDLRDGGAQ 147

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
            F+D + ++      +R+       R   D  +          P +         R+ + 
Sbjct: 148 HFADCISAIRRKSPNIRIETLVPDFRGRMDRALDILTVTP---PDVFNHNLENVPRLYRQ 204

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           +          +++++ +SV P+I   S  +VG  GET+D+    M  + + G       
Sbjct: 205 VRPGADYEWSLKLLEKFKSVHPNIPTKSGLMVGL-GETNDEILDVMRDLRRHGVTMLTLG 263

Query: 366 KY 367
           +Y
Sbjct: 264 QY 265


>gi|261341250|ref|ZP_05969108.1| lipoyl synthase [Enterobacter cancerogenus ATCC 35316]
 gi|288316554|gb|EFC55492.1| lipoyl synthase [Enterobacter cancerogenus ATCC 35316]
          Length = 321

 Score = 54.2 bits (129), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 31/183 (16%), Positives = 65/183 (35%), Gaps = 12/183 (6%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V    G  ++   ++    A+ + D  +  + +   +    R    DG   
Sbjct: 94  CTRRCPFCDV--AHGRPVAPDANEPQKLAQTIADMALRYVVITSVD----RDDLRDGGAQ 147

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAH-GDLDVLMPYLHLPVQSGSDRILK 304
            F+D + ++ E    +++       R   D  +         +  +    V     RI +
Sbjct: 148 HFADCITAIREKSPSIKIETLVPDFRGRMDRALDILTATPPDVFNHNLENV----PRIYR 203

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
            +          ++++R +   P I   S  +VG  GET+ +    M  + + G      
Sbjct: 204 QVRPGADYNWSLKLLERFKEAHPHIPTKSGLMVGL-GETNAEIIEVMRDLRRHGVTMLTL 262

Query: 365 FKY 367
            +Y
Sbjct: 263 GQY 265


>gi|167755872|ref|ZP_02427999.1| hypothetical protein CLORAM_01389 [Clostridium ramosum DSM 1402]
 gi|167704811|gb|EDS19390.1| hypothetical protein CLORAM_01389 [Clostridium ramosum DSM 1402]
          Length = 364

 Score = 54.2 bits (129), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 39/228 (17%), Positives = 85/228 (37%), Gaps = 17/228 (7%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARK-----LIDNGVCEITLLGQNVNAWRGKGL 240
           C++ C +C        E        +   +       I   +  I + G   ++   + L
Sbjct: 13  CEQICAYCDFCKVFYNE--HQADDYLAVLKHELQALNITEPLKTIYIGGGTPSSLNDEQL 70

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300
           +        +   +S     V +             ++K  G     +  L + V++ +D
Sbjct: 71  E---WLMDIIKPYISSETKEVSIEVNPESIDYYKLDILKRGG-----VSRLSIGVETFND 122

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
            +LK +NR+HT  +  +IID  R +  +  IS D + G P +T  D +  +  V ++   
Sbjct: 123 ILLKKINRQHTTIQVERIIDYARKIGFN-NISIDLMYGLPNQTITDIKNDLAKVRQLPIE 181

Query: 361 QAFSFKYSPRLGTPGSNM-LEQVDENVKAERLLCLQKKLREQQVSFND 407
               +       T   N+  + +DE V+++    +++ L +      +
Sbjct: 182 HISYYSLILEDHTVLKNLNYQPLDEEVESKITQLIEESLEQIGFHKYE 229


>gi|152998330|ref|YP_001343165.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Marinomonas sp. MWYL1]
 gi|150839254|gb|ABR73230.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Marinomonas sp. MWYL1]
          Length = 389

 Score = 54.2 bits (129), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 19/131 (14%), Positives = 48/131 (36%), Gaps = 8/131 (6%)

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPY-------LHLPVQSGSDRILKSMNRRHTAYE 314
           R +   +   +++        + +    +       L + +QS    +LK++ R H   E
Sbjct: 91  REKLVWADNAEITMEANPGTFEQEKFRHFRQAGINRLSIGIQSFQPNLLKTLGRIHNREE 150

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
               +D+ R+   D  I+ D + G P ++ +     + L  ++       ++ +    T 
Sbjct: 151 AIHAVDKSRAAGFD-NINLDLMHGLPDQSLEMALEDLSLAIELNPEHLSWYQLTIEPNTE 209

Query: 375 GSNMLEQVDEN 385
                  + E+
Sbjct: 210 FYRRPPTLPED 220


>gi|258645283|ref|ZP_05732752.1| radical SAM domain protein [Dialister invisus DSM 15470]
 gi|260402633|gb|EEW96180.1| radical SAM domain protein [Dialister invisus DSM 15470]
          Length = 631

 Score = 54.2 bits (129), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 68/368 (18%), Positives = 127/368 (34%), Gaps = 45/368 (12%)

Query: 71  HIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLV----VVAGCVAQAEGEEILRRSPIVNV 126
               +A E +   L  IRN K      G   ++     + GC   +  E     + I   
Sbjct: 163 FFIGEAEESICEMLELIRNWKKDGKPGGRKEIIRRMAAIEGCYVPSLYEVSYYENGIF-- 220

Query: 127 VVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGC 186
               ++   +   ++     + + D D    D    L  ++  ++R     A L +  GC
Sbjct: 221 ----RSISPIISNVQFPIQKRVICDMDRVHIDDKPILPHIEIVHDR-----AVLEMFRGC 271

Query: 187 DKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKC 245
            + C FC           ++  ++ + A  LI   G  EI+L+  +   +          
Sbjct: 272 SRGCRFCQAGMIYRPVREKTEKRLQELADTLIRRTGYNEISLMSLSSADY---------S 322

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY-LHLPVQSGSDRILK 304
              +L+  L E     R+  +    R  S   I     +  +    L L  ++G+ R+  
Sbjct: 323 RLPELVDHLLETFKNRRVSVSLPSLRVDSFS-IDIAKKVQQVRKSGLTLAPEAGTQRLRN 381

Query: 305 SMNRRHTAYEYRQII-DRIRSVRPDIAISSDFIVGFPGETDDDFR-------ATMDLVDK 356
            +N+  T  +      +  R+    + +   F++G P ETD+D            DL  +
Sbjct: 382 VINKGVTEKDIMGACANAFRNGWSKVKLY--FMMGLPTETDEDLAGIASLALRIKDLYHE 439

Query: 357 IG--YA---QAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLR--EQQVSFNDAC 409
           I   Y          + P+  TP   M  Q        +   L+   R    + +++DA 
Sbjct: 440 IRGKYDCRVTVSVSSFVPKPFTPFQWMP-QCSVAEIERKQQYLKDLFRDKHIKYAYHDAK 498

Query: 410 VGQIIEVL 417
            G +  VL
Sbjct: 499 TGYLEAVL 506


>gi|94970065|ref|YP_592113.1| radical SAM family Fe-S protein [Candidatus Koribacter versatilis
           Ellin345]
 gi|94552115|gb|ABF42039.1| Fe-S protein, radical SAM family [Candidatus Koribacter versatilis
           Ellin345]
          Length = 523

 Score = 54.2 bits (129), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 58/352 (16%), Positives = 111/352 (31%), Gaps = 43/352 (12%)

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPI-VNVVVGPQTYYRLPELLERAR 144
            + +L     ++   +   V G  A    ++IL  +   ++ VV  +     P +LE A 
Sbjct: 101 EVVDLAKETKRKMPGVFFFVGGHSASFVAKDILNHAEGAIDCVVRGEGEGVAPRVLEAAA 160

Query: 145 FGKRVVDT-------------DYSVEDKFERLSIVDGGYNRKRGVT------AFLTIQEG 185
             ++ V                  V+   +     +    RK          A +    G
Sbjct: 161 DDRKRVHELPGVVSLDGEGPHAEMVKSIDDLHPARELTSKRKSYFIGVLDPAASVEFTRG 220

Query: 186 CDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK 244
           C   C FC      G     RS     +E  ++ + G      L  +V          E 
Sbjct: 221 CPWDCVFCSAWTFYGRSYRKRSPESAAEEMARIKEPG----VFLVDDVCFI-------EP 269

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL-MPYLHLPVQSGSDRIL 303
                +   L +    V+  Y      D+     +       L + Y+ L +++  D  L
Sbjct: 270 EHGFAIGRELEK--RNVKKEYYLETRGDVLLRNKEVFKYWRKLGLEYMFLGLEAIDDEGL 327

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           K+  +R TA +  + ++  R     I ++ + I   P      F A  +    +      
Sbjct: 328 KANRKRTTAGKNLEALEFTRK--EGITVALNIIAD-PSWDKAKFAAVREWSLSVP-EIVS 383

Query: 364 SFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQV---SFNDACVGQ 412
               +P  GT    + E  + + +  RL  +Q  +   ++    F    V  
Sbjct: 384 ISVNTPYPGTESW-LTESREFSTRDYRLFDVQHAVMPTKMSLEEFYRELVNT 434


>gi|302757115|ref|XP_002961981.1| hypothetical protein SELMODRAFT_64240 [Selaginella moellendorffii]
 gi|300170640|gb|EFJ37241.1| hypothetical protein SELMODRAFT_64240 [Selaginella moellendorffii]
          Length = 410

 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 39/204 (19%), Positives = 65/204 (31%), Gaps = 13/204 (6%)

Query: 186 CDKFCTFCVVPYTRGIEISR----SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD 241
           C + C +C  P     E S     ++   VD   + I           Q V    G    
Sbjct: 11  CKRRCHYCDFPIVALGESSSNAGSTMESYVDLVCQEIAAERSPSRGALQTVFFGGGTPSL 70

Query: 242 GEKCTFSDLLYSLSEIKGLVR----LRYTTSHPRDMSDC-LIKAHGDLDVLMPYLHLPVQ 296
                   ++ +L    G  R           P   S   L +A     +    + L VQ
Sbjct: 71  IPIPLLQRIIQALEAKHGFSRDAPMEISMEMDPGTFSRDYLTEAIQSCGI--NRVSLGVQ 128

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
           +  D +LK   R H   +  Q I+ I+    + ++  D I   P  T   +R +++    
Sbjct: 129 AFDDDLLKLCGRSHCLDDVFQSIEWIKDSLQNWSL--DLISSLPHHTLASWRKSLEQAIA 186

Query: 357 IGYAQAFSFKYSPRLGTPGSNMLE 380
              A    +      GT   N+ +
Sbjct: 187 ASPAHVSIYDLQIEQGTKFGNLYK 210


>gi|317132164|ref|YP_004091478.1| Radical SAM domain protein [Ethanoligenens harbinense YUAN-3]
 gi|315470143|gb|ADU26747.1| Radical SAM domain protein [Ethanoligenens harbinense YUAN-3]
          Length = 614

 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 76/398 (19%), Positives = 132/398 (33%), Gaps = 48/398 (12%)

Query: 44  MEDMFFSQGY-ERVNSMDDADLIVLN----TCHIREKAAEKVYSFLGRIRNLKN------ 92
           + DM    G   R  +  + D +V+     TC+    AA      LG    +        
Sbjct: 118 VLDMLELAGLPLRAENRTETDPVVICGGPCTCNPEPMAAFADLFVLGEGEKVICEVVELY 177

Query: 93  SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV-D 151
            + K             AQ  G  + R    V    G     R       AR  KRV+ D
Sbjct: 178 RKCKREKRGKSAFLRAAAQIGGVYVPRFYESVYHDDGTLAETRPLAPEIPARVRKRVMPD 237

Query: 152 TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVV 211
            D S   K   L  VD  ++R     A L +  GC + C FC   +       +S   + 
Sbjct: 238 LDGSFFPKQFVLPYVDIVHDR-----AVLEVFRGCIRGCRFCQAGFIYRPVREKSPQTLS 292

Query: 212 DEARKLID-NGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270
            +A  L    G  EI++   + + + G     E  T       +        L   +   
Sbjct: 293 TQAHDLCSTTGYDEISVASLSTSDYTGLEPLLEDLTSWTEREKI-------NLSLPSLRV 345

Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD-- 328
            + S  L++    +      L    ++G+ R+  ++N+  T     +I+   R       
Sbjct: 346 DNFSRELMEKVSGVRK--SGLTFAPEAGTQRLRDAINKNVTEE---EILRTCRLAFEGGW 400

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKI--GYAQ-------------AFSFKYSPRLGT 373
            ++   F++G P ET +D      L  K+   +                    + P+  T
Sbjct: 401 TSVKLYFMLGLPTETMEDVEGIACLAQKVVDTFYHMPEKPKGKAVHVSVSVSTFVPKPFT 460

Query: 374 PGSNMLEQVDENV-KAERLLCLQKKLREQQVSFNDACV 410
           P     +   E + + +R L    K R+  +S ++  +
Sbjct: 461 PFQWEPQDTRETITEKQRHLRACIKSRKISLSCHEPRI 498


>gi|254431726|ref|ZP_05045429.1| oxygen-independent coproporphyrinogen III oxidase [Cyanobium sp.
           PCC 7001]
 gi|197626179|gb|EDY38738.1| oxygen-independent coproporphyrinogen III oxidase [Cyanobium sp.
           PCC 7001]
          Length = 452

 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 35/208 (16%), Positives = 72/208 (34%), Gaps = 27/208 (12%)

Query: 186 CDKFCTFCVVPYTRGIEISR-------SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK 238
           C   C +C          SR       SL++ ++     +        L       W G 
Sbjct: 63  CRHACWYCGCNRITTQLGSRVVEPYLASLARELELITAAMPQRRRLAQL------HWGGG 116

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLI--KAHGDLDVL-MPYLHLPV 295
             +      +  L+ L  I     L        +++   +       L  L    L   +
Sbjct: 117 TPNYLNPQETSRLWQL--IARHFDLAADLEASIEVNPEFLSRDGVLQLRQLGFNRLSFGI 174

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
           Q     + K++NR     + R+++  +R      +++ D I G P +T + FR T++LV+
Sbjct: 175 QDADPEVQKAVNRVVPPEQLRRVMGWLREA-DFASVNVDLICGLPLQTPERFRHTLELVE 233

Query: 356 KIGYAQAFSFKYSPRLGTPGSNMLEQVD 383
            +   +   F +        + + +Q+ 
Sbjct: 234 ALHPDRVSLFSF--------AYLPDQLP 253


>gi|62182466|ref|YP_218883.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|62130099|gb|AAX67802.1| O2-independent coproporphyrinogen III oxidase [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
          Length = 457

 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 40/248 (16%), Positives = 87/248 (35%), Gaps = 20/248 (8%)

Query: 173 KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEI--TLLGQ 230
           +R ++ ++ I   C K C FC        +  +   Q +D   + I +         + Q
Sbjct: 50  ERPLSLYVHIPF-CHKLCYFCGCNKIVTRQQHK-ADQYLDALEQEIRHRAPLFADRHVSQ 107

Query: 231 NVNAWRGKGLDGEKCTFSDLLYSLSE-----IKGLVRLRYTTSHPRDMSDCLIKAHGDLD 285
            ++   G      K   S L+  L E         + +      PR++   ++       
Sbjct: 108 -LHWGGGTPTYLNKAQISRLMTLLRENFHFNTDAEISIEV---DPREIDLDVLDHLRAEG 163

Query: 286 VLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS-DFIVGFPGETD 344
                L + VQ  +  + + +NR         +++  R +      ++ D I G P +T 
Sbjct: 164 --FNRLSMGVQDFNKEVQRLVNREQDEEFIFALLNHARDI--GFTSTNIDLIYGLPKQTP 219

Query: 345 DDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQV 403
           + F  T+  V ++   +   F Y+       +   ++  D     ++L  LQ+ +     
Sbjct: 220 ESFAFTLKRVTELNPDRLSVFNYAHLPTLFAAQRKIKDADLPSAQQKLDILQETIVSLTQ 279

Query: 404 SFNDACVG 411
           +     +G
Sbjct: 280 AGYQ-FIG 286


>gi|311893700|dbj|BAJ26108.1| hypothetical protein KSE_02600 [Kitasatospora setae KM-6054]
          Length = 631

 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 36/179 (20%), Positives = 70/179 (39%), Gaps = 19/179 (10%)

Query: 183 QEGC----DKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK 238
             GC       CTFC +  +     S+     ++E   L +       LL   V      
Sbjct: 273 SRGCWWGEKHHCTFCGLNGSAMAYRSKRPEDFLEEILALTERH----RLLDIQVVDNILD 328

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
                   F  +L  L+ +   +RL +      ++     +  GD   +   +   ++S 
Sbjct: 329 MGY-----FETVLRPLAALPVDLRLHFEI--KANLRREQFQLLGDAGAV--QVQPGIESL 379

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
           S RILK M++  T  +  + +   +S    ++++ + + GFPGE  DD+R  +  +  +
Sbjct: 380 SSRILKLMDKGVTGCQNVRALRDAQSA--GVSVAWNHLYGFPGEHPDDYREILRRLPAL 436


>gi|303229382|ref|ZP_07316172.1| radical SAM family uncharacterized protein [Veillonella atypica
           ACS-134-V-Col7a]
 gi|302515918|gb|EFL57870.1| radical SAM family uncharacterized protein [Veillonella atypica
           ACS-134-V-Col7a]
          Length = 627

 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 37/211 (17%), Positives = 78/211 (36%), Gaps = 18/211 (8%)

Query: 138 ELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197
           E +      + + D ++        +  +D  ++R     A L +  GC + C FC    
Sbjct: 226 EDVPATIQKRIIEDVEHVFFPTKPVVPFLDIVHDR-----AVLELFRGCTRGCRFCQAGM 280

Query: 198 TRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256
                  R+  ++++ A++ I N G  EI+L+  +   +             +L+  L E
Sbjct: 281 LYRPVRERTPERLLEIAKETIANTGHNEISLMSLSSADY---------SKLPELVDMLME 331

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY-LHLPVQSGSDRILKSMNRRHTAYEY 315
                ++  +    R  S   I     +  +    L    ++GS R+   +N+  +  + 
Sbjct: 332 EFKDKQVSVSLPSLRIDSFS-IDIAKKVQQVRKSGLTFAPEAGSQRMRDVINKGVSEEDL 390

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDD 346
                       +  +   F++G P ETD+D
Sbjct: 391 LAACTNAFKSGWN-TVKLYFMMGLPTETDED 420


>gi|239979432|ref|ZP_04701956.1| hypothetical protein SalbJ_08349 [Streptomyces albus J1074]
          Length = 648

 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 67/401 (16%), Positives = 118/401 (29%), Gaps = 71/401 (17%)

Query: 70  CHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVV----VAGCVAQAEGEEILRRSPIVN 125
           C +     + V      IR  K      G + ++       G    A  +        + 
Sbjct: 169 CAVVGDGEQAVLEITDIIRAWKAEGRPGGREEVLFRLARTGGVYVPAFYDVEYLPDGRIA 228

Query: 126 VVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEG 185
            VV  ++                V+D D     K   + + +  + R       + I  G
Sbjct: 229 RVVPNRSGVPWR------VSKHTVMDLDEWPYPKQPLVPLAETVHERMS-----VEIFRG 277

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEK 244
           C + C FC           RS++ + +   K +   G  E+ LL     +       G+ 
Sbjct: 278 CTRGCRFCQAGMITRPVRERSITGIGEMVDKGLKATGFEEVGLLS---LSSADHSEIGDV 334

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304
                  Y   +I     L   ++     +  L             L    + GS+R+ K
Sbjct: 335 AKGLADRYEEDKIG----LSLPSTRVDAFNVDLANELTRNGR-RSGLTFAPEGGSERMRK 389

Query: 305 SMNRRHTAYEYRQIIDR-----IRSVRPDIAISSDFIVGFPGETDDDFRATMDLV----- 354
            +N+  +  +  + +        R V+        F+ G P ETD+D     D+      
Sbjct: 390 VINKMVSEEDLIRTVATAYGNGWRQVK------LYFMCGLPTETDEDVLQIADMATNVIA 443

Query: 355 --------DKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLR------- 399
                     I         + P+  TP      Q+       RL  L+ K+R       
Sbjct: 444 KGRQVSGSQDIRCT-VSIGGFVPKPHTP-FQWAPQLSAEQTDARLEKLRDKIRGDKKYGR 501

Query: 400 --------------EQQVSFNDACVGQIIEVLIEKHGKEKG 426
                         E  +S  D  +G +I  + E  G+  G
Sbjct: 502 SIGFRYHDGKPGIVEGLLSRGDRRIGSVIRAVYEDGGRFDG 542


>gi|94676667|ref|YP_588691.1| lipoyl synthase [Baumannia cicadellinicola str. Hc (Homalodisca
           coagulata)]
 gi|123384143|sp|Q1LTM3|LIPA_BAUCH RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|94219817|gb|ABF13976.1| lipoic acid synthetase [Baumannia cicadellinicola str. Hc
           (Homalodisca coagulata)]
          Length = 294

 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 27/195 (13%), Positives = 62/195 (31%), Gaps = 12/195 (6%)

Query: 174 RGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVN 233
            G   F+ +   C + C FC V    G  +   + +    A  + + G+  + +   N  
Sbjct: 55  NGTATFMILGNICTRRCPFCNV--AHGRPLIPDIHEPEKLAETITNMGLRYVVITSVN-- 110

Query: 234 AWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHL 293
             R    DG    F D + ++       R+       R      ++        +     
Sbjct: 111 --RDDLYDGGAQHFVDCIRAIRAKNSATRIEVLVPDFRGHMKTALEILNTSPPDV----F 164

Query: 294 PVQSGSDRIL-KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352
                +   L + +      +   +++ + +   P +   S  ++G  GET ++    M 
Sbjct: 165 NHNIENVPRLYRHIRPGADYHRSLKLLKKFKEYNPSLPTKSGLMMGL-GETREEIIEVMR 223

Query: 353 LVDKIGYAQAFSFKY 367
            + +         +Y
Sbjct: 224 DLRQHNVTMLTLGQY 238


>gi|90406828|ref|ZP_01215020.1| lipoyl synthase [Psychromonas sp. CNPT3]
 gi|90312065|gb|EAS40158.1| lipoyl synthase [Psychromonas sp. CNPT3]
          Length = 322

 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 31/207 (14%), Positives = 70/207 (33%), Gaps = 10/207 (4%)

Query: 161 ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN 220
           E  S  +       G   F+ + E C + C FC V    G  ++    +    A  + D 
Sbjct: 70  EEASCPNLNECFNHGTATFMILGEICTRRCPFCDV--GHGKPLAVDKDEPKKLAETVRDM 127

Query: 221 GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKA 280
            +  + +   +    R    DG    F+D +  +  +   +++        D    + KA
Sbjct: 128 KLKYVVITSVD----RDDLRDGGAQHFADCIREIRLLSPAIKIEILVP---DFKGRMDKA 180

Query: 281 HGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFP 340
               +  +P +       +  + + +          Q++ + +   P +   S  +VG  
Sbjct: 181 LACFEHDIPDVFNHNLETAPHLYQKVRPGADYKWSLQLLKKFKQQHPQVPTKSGIMVGL- 239

Query: 341 GETDDDFRATMDLVDKIGYAQAFSFKY 367
           GE + +    ++ +   G       +Y
Sbjct: 240 GENNAEIEQVLEDLHAHGVTMLTLGQY 266


>gi|331665515|ref|ZP_08366413.1| oxygen-independent coproporphyrinogen III oxidase [Escherichia coli
           TA143]
 gi|331057200|gb|EGI29190.1| oxygen-independent coproporphyrinogen III oxidase [Escherichia coli
           TA143]
          Length = 457

 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 38/264 (14%), Positives = 87/264 (32%), Gaps = 20/264 (7%)

Query: 157 EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS-------LSQ 209
           ED  E+  +       +R ++ ++ I   C K C FC        +  ++         +
Sbjct: 34  EDFGEQAFLQAVARYPERPLSLYVHIPF-CHKLCYFCGCNKIVTRQQHKADQYLDALEQE 92

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSH 269
           +V  A       V ++   G          +        +     ++ +           
Sbjct: 93  IVHRAPLFAGRKVSQLHWGGGTPTYLNKAQISRLMTLLRENFQFNADAE-----ISIEVD 147

Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329
           PR++   ++            L + VQ  +  + + +NR         +++  R +    
Sbjct: 148 PREIELDVLDHLRAEG--FNRLSMGVQDFNKEVQRLVNREQDEEFIFALLNHAREI--GF 203

Query: 330 AISS-DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQVDENVK 387
             ++ D I G P +T + F  T+  V ++   +   F Y+       +   ++  D    
Sbjct: 204 TSTNIDLIYGLPKQTPESFAFTLKRVAELNPDRLSVFNYAHLPTIFAAQRKIKDADLPSP 263

Query: 388 AERLLCLQKKLREQQVSFNDACVG 411
            ++L  LQ+ +     S     +G
Sbjct: 264 QQKLDILQETIAFLTQSGYQ-FIG 286


>gi|300871581|ref|YP_003786454.1| radical SAM domain-containing protein [Brachyspira pilosicoli
           95/1000]
 gi|300689282|gb|ADK31953.1| radical SAM domain protein [Brachyspira pilosicoli 95/1000]
          Length = 812

 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 46/247 (18%), Positives = 86/247 (34%), Gaps = 27/247 (10%)

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           V + +     K   + +V+G  NR       + I  GC   C FC+   T     +R++ 
Sbjct: 223 VENINEMPYVKKPLVPLVEGIQNRIS-----VEIARGCTHSCRFCLAGITYRPVRNRTIE 277

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDL--LYSLSEIKGLVRLRYT 266
           ++VD A + ++         G N         D        +  L +L E KG   L   
Sbjct: 278 KIVDIAMESLEA-------TGANTLNLFSLSADDYPHIGELIEYLQTLGEHKG-FSLSLP 329

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
           +           +           L   ++ GS  + + +N+         I+  ++ + 
Sbjct: 330 SLRIDSFDKETAERIAQFRK--TGLTFALEVGSHELREKINKSMDEDAIYNILADVQKMG 387

Query: 327 PDIAISSDFIVGF----PGETDDDFRATMDLVD----KIGYAQAFSFKYSPRLGTPGSNM 378
             I +   F++GF      E D+   A   +++    K+    A    + P+  TP  N 
Sbjct: 388 WKI-VKIYFMIGFTDNPEKEADEIIEALEKMLEVSKKKVKI-NAAINVFIPKPHTPLENN 445

Query: 379 LEQVDEN 385
            +  DE 
Sbjct: 446 NQLTDEE 452


>gi|134133302|ref|NP_001077026.1| radical S-adenosyl methionine domain-containing protein 1,
           mitochondrial precursor [Danio rerio]
 gi|187611409|sp|A4IGH2|RSAD1_DANRE RecName: Full=Radical S-adenosyl methionine domain-containing
           protein 1, mitochondrial; AltName:
           Full=Oxygen-independent coproporphyrinogen-III
           oxidase-like protein RSAD1; Flags: Precursor
 gi|134026346|gb|AAI35100.1| Rsad1 protein [Danio rerio]
          Length = 444

 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 33/205 (16%), Positives = 74/205 (36%), Gaps = 19/205 (9%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C K C++C         ISRS  +  D   + +      +  L Q V+        G   
Sbjct: 53  CLKRCSYCN----FNKYISRS--ENHDTMTECLQKETETLLKLSQ-VSRITSVFFGGGTP 105

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL-------MPYLHLPVQSG 298
           + +    +++ +   V      S   +++  +         L       +    + VQS 
Sbjct: 106 SLAQ-PSTIAAVLETVTKNSNLSDLAEVTLEVNPTPAGKARLKDFTLAGVNRFSIGVQSL 164

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           +   L+ + R H+     Q +   R + P   +S D +   PG++   ++  ++ +  + 
Sbjct: 165 NADHLRILGRDHSVQHALQTVSEARKLCPG-RVSVDIMFALPGQSVSCWQKQLEELLYVC 223

Query: 359 YAQAFSFKYSPRLGTPGSNMLEQVD 383
                 ++ +   GT    + +QV+
Sbjct: 224 DDHISLYQLTLERGT---QLFKQVE 245


>gi|311106993|ref|YP_003979846.1| radical SAM superfamily protein 4 [Achromobacter xylosoxidans A8]
 gi|310761682|gb|ADP17131.1| radical SAM superfamily protein 4 [Achromobacter xylosoxidans A8]
          Length = 630

 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 32/189 (16%), Positives = 66/189 (34%), Gaps = 20/189 (10%)

Query: 180 LTIQEGCDKF-CTFCVVPYTR-GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG 237
           LT+  GC    C+FC V     G     S   + D    ++          GQ    +  
Sbjct: 358 LTVAHGCYWKKCSFCDVSLDYIGRYEGASAEVLADRIEAIVRE-------TGQTGFHFVD 410

Query: 238 KGLDGE--KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPV 295
           +    +  K   ++L+   + I     +R+     +  S  L +   D   +       +
Sbjct: 411 EAAPPKSLKALATELIARNTGISWWGNIRF----EKTFSPELCELLADSGCIAVSG--GL 464

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
           +  SDR+L  M +  +  +  ++          I + +  + GFP +T  D    ++ V 
Sbjct: 465 EVASDRLLNLMKKGVSVEQVARVTRAFTDA--GILVHAYLMYGFPTQTVQDTVDALEYVR 522

Query: 356 KIGYAQAFS 364
           ++ +     
Sbjct: 523 QL-FDNGCI 530


>gi|291543944|emb|CBL17053.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Ruminococcus sp. 18P13]
          Length = 365

 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 38/209 (18%), Positives = 73/209 (34%), Gaps = 23/209 (11%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C   C +C   +           +    A ++ +N       L  +   + G        
Sbjct: 14  CAVKCPYCD--FYSNPYR---RERAEAYAARVAENLAAYPAELSVDTVYFGGGTPSILPP 68

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL-------MPYLHLPVQSG 298
                   L ++    R R++ +   +++  +         L       +  L   +QS 
Sbjct: 69  PL------LGQMLHAARRRFSLAADTEITLEVNPLTATPAALDAWRGLGVNRLSFGMQSA 122

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDI-AISSDFIVGFPGETDDDFRATMDLVDKI 357
            D  L  + RRHTA +    +DR  +       IS D ++G PG+T +    ++ +  ++
Sbjct: 123 VDAELHRLGRRHTAAQGIAAVDR--AAAAGFQNISCDLMLGTPGQTGESLAQSLAVYAQL 180

Query: 358 GYAQAFSFKYSPRLGTPG--SNMLEQVDE 384
             A   ++  S   GTP     M  QV +
Sbjct: 181 PIAHVSAYLLSIEPGTPFDTEAMRSQVPD 209


>gi|218132938|ref|ZP_03461742.1| hypothetical protein BACPEC_00799 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991811|gb|EEC57815.1| hypothetical protein BACPEC_00799 [Bacteroides pectinophilus ATCC
           43243]
          Length = 469

 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 34/201 (16%), Positives = 68/201 (33%), Gaps = 18/201 (8%)

Query: 174 RGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVN 233
            G + ++ I   C   C +C          S S+ +  D   + +    CE+  +   + 
Sbjct: 141 NGYSLYIGIPF-CPTTCLYCSFT-------SYSIDKWHDRVEEYLSALFCEMEFVAAKLK 192

Query: 234 AWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDC-------LIKAHGDLD 285
             R   +  G     +     L  + G +   +  S   +++          I     L 
Sbjct: 193 NRRLDTIYFGGGTPTTLSADQLDRLLGHMEKCFDMSDIVELTVEAGRPDSLTIDKLKVLK 252

Query: 286 -VLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETD 344
              +  + +  Q+ +   L  + R+HT  + ++          D  I+ D I+G PGE +
Sbjct: 253 AHNVGRISINPQTMNQATLDIIGRKHTVEQVKEAFAMAHECGLD-NINVDLIMGLPGEDE 311

Query: 345 DDFRATMDLVDKIGYAQAFSF 365
                T+D V K+        
Sbjct: 312 AMIHHTLDEVKKLAPTSLTVH 332


>gi|23005451|ref|ZP_00048262.1| COG1032: Fe-S oxidoreductase [Magnetospirillum magnetotacticum
           MS-1]
          Length = 200

 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 44/109 (40%), Gaps = 4/109 (3%)

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           ++ +   ++    +K   +    +  L +  +SG+ +IL ++ +        +       
Sbjct: 3   WSCNAKANVPRETLKVLKE--NGLRLLLVGYESGNQKILNNIKKGMRVEVAEKFTKDCHD 60

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
           +   IAI   FIVG PGET +  + T+    +I          +P  GT
Sbjct: 61  L--GIAIHGTFIVGLPGETKETIQETIAFAKRINPHTIQVSLAAPYPGT 107


>gi|326562536|gb|EGE12851.1| lipoyl synthase [Moraxella catarrhalis 46P47B1]
 gi|326564088|gb|EGE14328.1| lipoyl synthase [Moraxella catarrhalis 12P80B1]
 gi|326571682|gb|EGE21697.1| lipoyl synthase [Moraxella catarrhalis BC7]
          Length = 354

 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 69/208 (33%), Gaps = 12/208 (5%)

Query: 161 ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN 220
           E  +  +       G   F+ + + C + C FC V + R   +     +    A  ++  
Sbjct: 76  EEAACPNLPQCFGDGTATFMIMGDICTRRCPFCEVAHGRPNPL--DKDEPKHTAETILGL 133

Query: 221 GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKA 280
           G+    +   +    R    DG    F D++     +     +       R      +  
Sbjct: 134 GLKYAVITSVD----RDDLKDGGAGHFVDVINESKALSPNCLIEILVPDFRGREQVALDL 189

Query: 281 HGDL-DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGF 339
                  +  +    V     R+ K+            ++ + ++ RPD+A    F+VG 
Sbjct: 190 LTQTAPDVFNHNIETV----PRLYKAFRPGSDYEHSLSLLKQYKARRPDVATKCGFMVGL 245

Query: 340 PGETDDDFRATMDLVDKIGYAQAFSFKY 367
            GET+D+  A +D +           +Y
Sbjct: 246 -GETEDEVYALLDDLKAHDVDIITIGQY 272


>gi|326561316|gb|EGE11674.1| lipoyl synthase [Moraxella catarrhalis 7169]
 gi|326576332|gb|EGE26242.1| lipoyl synthase [Moraxella catarrhalis CO72]
          Length = 354

 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 69/208 (33%), Gaps = 12/208 (5%)

Query: 161 ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN 220
           E  +  +       G   F+ + + C + C FC V + R   +     +    A  ++  
Sbjct: 76  EEAACPNLPQCFGDGTATFMIMGDICTRRCPFCEVAHGRPNPL--DKDEPKHTAETILGL 133

Query: 221 GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKA 280
           G+    +   +    R    DG    F D++     +     +       R      +  
Sbjct: 134 GLKYAVITSVD----RDDLKDGGAGHFVDVINESKALSPNCLIEILVPDFRGREQVALDL 189

Query: 281 HGDL-DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGF 339
                  +  +    V     R+ K+            ++ + ++ RPD+A    F+VG 
Sbjct: 190 LTQTAPDVFNHNIETV----PRLYKAFRPGSDYEHSLSLLKQYKARRPDVATKCGFMVGL 245

Query: 340 PGETDDDFRATMDLVDKIGYAQAFSFKY 367
            GET+D+  A +D +           +Y
Sbjct: 246 -GETEDEVYALLDDLKAHDVDIITIGQY 272


>gi|296123616|ref|YP_003631394.1| lipoic acid synthetase [Planctomyces limnophilus DSM 3776]
 gi|296015956|gb|ADG69195.1| lipoic acid synthetase [Planctomyces limnophilus DSM 3776]
          Length = 288

 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 42/250 (16%), Positives = 82/250 (32%), Gaps = 17/250 (6%)

Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209
           V  D  +E   E     +           F+ +   C + C FC VP  +   +   L +
Sbjct: 27  VIADLKLETVCESAKCPNRTECWSAKTATFMVLGNVCTRPCGFCSVPRGKTEVV--QLDE 84

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSH 269
               A      G+  + +        R    DG    F + + ++ E  G   +   T  
Sbjct: 85  PGRVAEAAARLGLKYVVITSVT----RDDLPDGGANHFYECILAVRERTGAQ-VEVLTPD 139

Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329
            +     + +       +  +    V     R+ +  N  +       ++ +I+   PD+
Sbjct: 140 FKGNRAAISRVIEARPDVFNHNTETVPRLYHRVRR--NAEYQR--TLNLLAQIKEEAPDM 195

Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAE 389
              +  ++G  GET D+    +  +  +        +Y     TP  +ML  V+  V  E
Sbjct: 196 LTKTGLMLGL-GETRDELLEVLADLRAVNCDMLTLGQY--LQPTP--DMLP-VERYVPPE 249

Query: 390 RLLCLQKKLR 399
               L +  R
Sbjct: 250 EFDELGELAR 259


>gi|291451302|ref|ZP_06590692.1| conserved hypothetical protein [Streptomyces albus J1074]
 gi|291354251|gb|EFE81153.1| conserved hypothetical protein [Streptomyces albus J1074]
          Length = 660

 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 67/401 (16%), Positives = 118/401 (29%), Gaps = 71/401 (17%)

Query: 70  CHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVV----VAGCVAQAEGEEILRRSPIVN 125
           C +     + V      IR  K      G + ++       G    A  +        + 
Sbjct: 181 CAVVGDGEQAVLEITDIIRAWKAEGRPGGREEVLFRLARTGGVYVPAFYDVEYLPDGRIA 240

Query: 126 VVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEG 185
            VV  ++                V+D D     K   + + +  + R       + I  G
Sbjct: 241 RVVPNRSGVPWR------VSKHTVMDLDEWPYPKQPLVPLAETVHERMS-----VEIFRG 289

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEK 244
           C + C FC           RS++ + +   K +   G  E+ LL     +       G+ 
Sbjct: 290 CTRGCRFCQAGMITRPVRERSITGIGEMVDKGLKATGFEEVGLLS---LSSADHSEIGDV 346

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304
                  Y   +I     L   ++     +  L             L    + GS+R+ K
Sbjct: 347 AKGLADRYEEDKIG----LSLPSTRVDAFNVDLANELTRNGR-RSGLTFAPEGGSERMRK 401

Query: 305 SMNRRHTAYEYRQIIDR-----IRSVRPDIAISSDFIVGFPGETDDDFRATMDLV----- 354
            +N+  +  +  + +        R V+        F+ G P ETD+D     D+      
Sbjct: 402 VINKMVSEEDLIRTVATAYGNGWRQVK------LYFMCGLPTETDEDVLQIADMATNVIA 455

Query: 355 --------DKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLR------- 399
                     I         + P+  TP      Q+       RL  L+ K+R       
Sbjct: 456 KGRQVSGSQDIRCT-VSIGGFVPKPHTP-FQWAPQLSAEQTDARLEKLRDKIRGDKKYGR 513

Query: 400 --------------EQQVSFNDACVGQIIEVLIEKHGKEKG 426
                         E  +S  D  +G +I  + E  G+  G
Sbjct: 514 SIGFRYHDGKPGIVEGLLSRGDRRIGSVIRAVYEDGGRFDG 554


>gi|258626628|ref|ZP_05721458.1| oxygen-independent coproporphyrinogen III oxidase [Vibrio mimicus
           VM603]
 gi|258581132|gb|EEW06051.1| oxygen-independent coproporphyrinogen III oxidase [Vibrio mimicus
           VM603]
          Length = 480

 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 52/298 (17%), Positives = 104/298 (34%), Gaps = 24/298 (8%)

Query: 127 VVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVD----GGYNRKRGVTAFLTI 182
           VV  Q       +L++  +      +  +  +  E  +I D         +R ++ ++ I
Sbjct: 23  VVPSQQIVWDQAILDKYNYSGPRYTSYPTAVEFHEAFTIADFDMACTQYPERPLSLYIHI 82

Query: 183 QEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG 242
              C K C +C          S    + +D     I        L G+NV         G
Sbjct: 83  PF-CHKLCYYCGCNKVITRH-SHKADEYLDVLEHEIRQ--RASLLTGRNVTQLH---FGG 135

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL-------MPYLHLPV 295
              TF      +S +  L+R  +  +   ++S  +      L+VL          + + V
Sbjct: 136 GTPTF-LTNAQISRLMTLLRSEFDFADDAEISIEIDPREIQLEVLDHLRQEGFNRVSIGV 194

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS-DFIVGFPGETDDDFRATMDLV 354
           Q  +  + K +NR         +++R + +      ++ D I G P +T + F  T+  V
Sbjct: 195 QDFNKEVQKLVNREQDEQFIFALVERAKQL--GFRSTNLDLIYGLPKQTAETFAQTLQQV 252

Query: 355 DKIGYAQAFSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVG 411
             +   +   F Y+       +   ++  D     E+L  LQ+ +     +     +G
Sbjct: 253 LTMQPGRLSVFNYAHMPQLFAAQRKIKDADLPAAEEKLAILQQTIVTLTGAGYQ-FIG 309


>gi|156935734|ref|YP_001439650.1| hypothetical protein ESA_03604 [Cronobacter sakazakii ATCC BAA-894]
 gi|156533988|gb|ABU78814.1| hypothetical protein ESA_03604 [Cronobacter sakazakii ATCC BAA-894]
          Length = 311

 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 2/83 (2%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +L L +QS  D+ L  +NR H    Y+    R R+    + + +  IVG PGET  D   
Sbjct: 141 WLELGLQSAKDKTLHRINRGHDFACYQGTTRRARAR--GLQVCTHLIVGLPGETRSDALT 198

Query: 350 TMDLVDKIGYAQAFSFKYSPRLG 372
           +++ V + G             G
Sbjct: 199 SLERVVETGVDGIKLHPLHIVEG 221


>gi|119773228|ref|YP_925968.1| coproporphyrinogen III oxidase [Shewanella amazonensis SB2B]
 gi|119765728|gb|ABL98298.1| oxygen-independent coproporphyrinogen III oxidase [Shewanella
           amazonensis SB2B]
          Length = 446

 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 32/238 (13%), Positives = 77/238 (32%), Gaps = 25/238 (10%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C K C +C         I+R   +       L    +    L           G  G   
Sbjct: 51  CAKLCYYC----GCNKVITRHAHKADQYIEYLASEILNRAPLFKGYTVTQMHWG--GGTP 104

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDC---------LIKAHGDLDVLMPYLHLPVQ 296
           TF      +  +  L++  +  +   + S           ++    +       + + VQ
Sbjct: 105 TF-LSPEQILRLTKLLKDNFNFADEGEFSIEVDPREIELTMLDTLKEAG--FNRISIGVQ 161

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
             + ++ +++NR         +I + +++  + + + D I G P +T + F  T+  +  
Sbjct: 162 DFNKQVQEAVNRPQDEQFIFDLIGKAKAMGFE-STNVDLIYGLPHQTPETFAETIQRILD 220

Query: 357 IGYAQAFSFKYSPRLGTPGSNM---LEQVDENVKAERLLCLQKKLREQQVSFNDACVG 411
           +   +   F Y+       +      E +      ++L  L + +     +     +G
Sbjct: 221 LSPDRLSVFNYAHLPARFAAQRKIKDEDLPSP--QQKLEILHQTIETLVDAGYQ-YIG 275


>gi|288941687|ref|YP_003443927.1| coproporphyrinogen dehydrogenase [Allochromatium vinosum DSM 180]
 gi|288897059|gb|ADC62895.1| Coproporphyrinogen dehydrogenase [Allochromatium vinosum DSM 180]
          Length = 491

 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 50/280 (17%), Positives = 89/280 (31%), Gaps = 50/280 (17%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG---LDG 242
           C++ C FC  P   G        +  DE  + +D    E+ L    +   + +    L G
Sbjct: 83  CEQRCLFCHYPVKFGKFG----DKTHDETERYLDALEREMDLFRNRLGIQKFQARSILVG 138

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDC-----LIKAH-GDLDVLMP-----YL 291
                      L  +    + R   S     +       L   H  +   ++       L
Sbjct: 139 GGTPTLLTPAQLDRMLTGFKERVDCSRVTQFNFDVDPGTLTDQHGAERRRILREHGVDRL 198

Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351
            + VQS  D IL+ M+R H        I+  R+      ++ +FI G+PG+T + +   +
Sbjct: 199 TIGVQSLDDEILRKMHRPHDVKTALASIEACRA--DGFQLNIEFIFGYPGQTLEGWMRMI 256

Query: 352 D-----LVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFN 406
           D      V++I   +     Y    G           + +   R   L       ++   
Sbjct: 257 DEAARLDVEEIQLYRLKIDSYGDAQG---------PIDKIVQLRPQELPAFEEAIRMKQA 307

Query: 407 DACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHN 446
                  IE+L E          G +  L+ V  +     
Sbjct: 308 A------IEILAE---------HGYTENLRRV-FSKDPAK 331


>gi|222148563|ref|YP_002549520.1| lipoyl synthase [Agrobacterium vitis S4]
 gi|254809148|sp|B9JW84|LIPA_AGRVS RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|221735549|gb|ACM36512.1| lipoic acid synthetase [Agrobacterium vitis S4]
          Length = 323

 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 28/195 (14%), Positives = 69/195 (35%), Gaps = 11/195 (5%)

Query: 173 KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNV 232
           ++    F+ + E C + C FC V    G   +    +  + A+ +   G+  + +   + 
Sbjct: 74  EKKHATFMIMGEICTRACAFCNV--ATGKPNALDREEPANVAKAVRQMGLSHVVITSVD- 130

Query: 233 NAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLH 292
              R    DG    F  +++++ E      +   T         L +       +  +  
Sbjct: 131 ---RDDLADGGAEHFEQVIWAIREASPATTIEILTPDFLKKPGALERVVAAKPDVFNH-- 185

Query: 293 LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352
             +++     L ++      +   +++ R++ + P +   S  +VG  GE  ++    MD
Sbjct: 186 -NMETVPGNYL-TVRPGARYFHSVRLLQRVKELDPTMFTKSGIMVGL-GEERNEVLQLMD 242

Query: 353 LVDKIGYAQAFSFKY 367
            +           +Y
Sbjct: 243 DLRTADVDFLTIGQY 257


>gi|220909735|ref|YP_002485046.1| lipoyl synthase [Cyanothece sp. PCC 7425]
 gi|219866346|gb|ACL46685.1| lipoic acid synthetase [Cyanothece sp. PCC 7425]
          Length = 307

 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 39/244 (15%), Positives = 83/244 (34%), Gaps = 18/244 (7%)

Query: 131 QTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRG------VTAFLTIQE 184
           +   RLP  L R+      + T   +  K +  +I + G    RG         FL +  
Sbjct: 20  EPRDRLPAWLRRSLGKASELATVQQIIKKHQIHTICEEGRCPNRGECYAQKTATFLLMGP 79

Query: 185 GCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK 244
            C + C+FC V      ++     +    A  +   G+  + L        R    DG  
Sbjct: 80  TCTRSCSFCQVDKGHAPQV-LDPQEPEKVAEAVKLLGLKYVVLTSV----ARDDLPDGGA 134

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304
             F   + ++ +     ++   T         +      +     +        + R L+
Sbjct: 135 GWFVATMAAIRQGNPSTQIEVLTPDFHGDRTAIATIVRAVPACYNHNL-----ETVRRLQ 189

Query: 305 S-MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
             + R         ++  ++ + P++A  S  ++G  GET+ +   T+  +  +G  +  
Sbjct: 190 GPVRRGAKYERSLGVLKTVKDLNPNLATKSGLMLGL-GETEAEILETLADLRAVGCDRLT 248

Query: 364 SFKY 367
             +Y
Sbjct: 249 LGQY 252


>gi|187778426|ref|ZP_02994899.1| hypothetical protein CLOSPO_02020 [Clostridium sporogenes ATCC
           15579]
 gi|187772051|gb|EDU35853.1| hypothetical protein CLOSPO_02020 [Clostridium sporogenes ATCC
           15579]
          Length = 616

 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 44/239 (18%), Positives = 84/239 (35%), Gaps = 27/239 (11%)

Query: 184 EGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDG 242
            GC + C FC           +    +++ + KLI N G  EITL    ++      +  
Sbjct: 264 RGCTRGCRFCQAGMIYRPVREKKTEALLELSDKLIKNTGYDEITLSS--LSICDYSDIQN 321

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
              +  +        +G V +   +      S  LIK    +      L    ++GS R+
Sbjct: 322 LVFSMVERHK-----EGKVGVTLPSLRIDSFSVDLIKEIQKVRK--TGLTFAPEAGSQRM 374

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL--------- 353
              +N+  T       +           I   F++G P ET +D     +L         
Sbjct: 375 RDVINKGVTEENLMTSVKSAFEAGWS-TIKLYFMLGLPYETLEDVMGIAELGQKVVGKYY 433

Query: 354 -----VDKIGY-AQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFN 406
                + K G      +  + P+  TP     +   E V+ + +  L+  ++ +Q+++N
Sbjct: 434 EVPKEIRKKGLKVTVSTSIFVPKPFTPFQWAPQDTMEEVRKK-IEALRGNIKSKQITYN 491


>gi|303233694|ref|ZP_07320348.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Finegoldia magna BVS033A4]
 gi|302495128|gb|EFL54880.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Finegoldia magna BVS033A4]
          Length = 367

 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 33/204 (16%), Positives = 64/204 (31%), Gaps = 20/204 (9%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           CD  C +C                  +   +       EIT+   N N        G   
Sbjct: 11  CDYKCNYCDFSTMTKQY---------NRVDEYFRLLQKEITIYK-NPNEKIDTIYIGGGT 60

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY-------LHLPVQSG 298
                   + EI  L+   +     ++ +          + +  Y       + L VQS 
Sbjct: 61  PNLVDSKYIKEIYNLLNKSF-DLQIKEFTIECNPEFVTKEKIESYKSIGVDRISLGVQSF 119

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           +D   + + R H   +  +  + I+    +I+I  D I GFP ++ +     ++ + K+ 
Sbjct: 120 NDEYNRFLGREHKVTDVLKSFEIIKQYIDNISI--DLIFGFPNQSLESLDNDLNYITKLA 177

Query: 359 YAQAFSFKYSPRLGTPGSNMLEQV 382
                 +      GT      E +
Sbjct: 178 PNHVSWYNMILEPGTKFYKDYEDI 201


>gi|262406437|ref|ZP_06082986.1| Fe-S oxidoreductase family 2 [Bacteroides sp. 2_1_22]
 gi|294643314|ref|ZP_06721140.1| radical SAM domain protein [Bacteroides ovatus SD CC 2a]
 gi|294806508|ref|ZP_06765349.1| radical SAM domain protein [Bacteroides xylanisolvens SD CC 1b]
 gi|262355140|gb|EEZ04231.1| Fe-S oxidoreductase family 2 [Bacteroides sp. 2_1_22]
 gi|292641437|gb|EFF59629.1| radical SAM domain protein [Bacteroides ovatus SD CC 2a]
 gi|294446371|gb|EFG14997.1| radical SAM domain protein [Bacteroides xylanisolvens SD CC 1b]
 gi|295083970|emb|CBK65493.1| Fe-S oxidoreductase [Bacteroides xylanisolvens XB1A]
          Length = 546

 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 53/378 (14%), Positives = 112/378 (29%), Gaps = 56/378 (14%)

Query: 68  NTCHIREKAAEKVYSFL---------GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEIL 118
           NT  +  +        +          ++ ++ +          V++ G     + E  L
Sbjct: 44  NTGSVVNQIYRHQPDIIAATNWLFNHEQLLHIVSRAKALLPHCCVILGGPEFLGDNEAFL 103

Query: 119 RRSPIVNVVVGPQTYYRLPELLERA-----------------RFGKRVVDTDYSVEDKFE 161
            ++  V+ V   +     P  L+                     G+   +    V +  E
Sbjct: 104 YKNKFVSGVFRGEGEEVFPLWLKVWNQPRKEWKSITGLCYLNESGEYQDNGLARVMNFSE 163

Query: 162 RLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNG 221
            +      +         L    GC   C FC V        + SL  + +    + ++G
Sbjct: 164 LVPPEKSRFFNWSKPFVQLETTRGCFNTCAFC-VSGGEKPVRTLSLEAIKERLDVIHEHG 222

Query: 222 VCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAH 281
           +  + +L +  N    +  +       +L     +I       +   HP  +SD L +  
Sbjct: 223 IKNVRVLDRTFNYNNKRAKE-----LLNLFREYPDI-----CFHLEIHPALLSDELKQEL 272

Query: 282 GDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFP- 340
             L   + +L   +QS  + +L+   R          +  + S+  ++   +D I G P 
Sbjct: 273 ATLPKGLLHLEAGIQSLRENVLEQSRRIGKLSNALAGLHYLCSLE-NMETHADLIAGLPL 331

Query: 341 ---GETDDDFRATMDL-VDKIGYAQAFSFKYSPRLGTPGSNMLEQV--------DENVKA 388
               E  DD R   +    +I              GT      +++           V  
Sbjct: 332 YHLSEIFDDVRTLTEYGAGEIQLESLKL-----LPGTEMRRRADELGIQYSPLPPYEVLQ 386

Query: 389 ERLLCLQKKLREQQVSFN 406
            R + + +      +S  
Sbjct: 387 TREITVDELQTAHYMSRL 404


>gi|260433926|ref|ZP_05787897.1| lipoyl synthase [Silicibacter lacuscaerulensis ITI-1157]
 gi|260417754|gb|EEX11013.1| lipoyl synthase [Silicibacter lacuscaerulensis ITI-1157]
          Length = 316

 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 40/278 (14%), Positives = 85/278 (30%), Gaps = 27/278 (9%)

Query: 119 RRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDK-----FERLSIVDGGYNRK 173
           +R P            +   +  +A  GK   DT   + D       E     + G    
Sbjct: 9   QRHPEKAHKPDNAQPKKPNWIRVKAPGGKGYADTRRIMRDNNLVTVCEEAGCPNVGECWS 68

Query: 174 RGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVN 233
           +G    + + E C + CTFC +    G   +    +    A  +   G+  + +   +  
Sbjct: 69  QGHATMMIMGEICTRGCTFCNI--ATGRPDALDAFEPGRVAHAVEKLGLNHVVITSVD-- 124

Query: 234 AWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIK-AHGDLDVLMPY-- 290
             R    DG    F+  + ++        +   T         +++        +  +  
Sbjct: 125 --RDDLADGGAEHFAQTIRAVRHRSPKTTIEILTPDFLKCDPSVLETVVAAKPDVFNHNL 182

Query: 291 -LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
                +          +      +   +++ R++ + P I   S  +VG  GE +   R 
Sbjct: 183 ETVPGLYP-------EVRPGARYFHSLRLLQRVKELDPSIFTKSGIMVGL-GENEQQVRQ 234

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ--VDEN 385
            MD +           +Y     TP  + +++    E 
Sbjct: 235 VMDDMRAADIDFLTIGQY--LQPTPKHHRVDRFVTPEE 270


>gi|259507717|ref|ZP_05750617.1| lipoic acid synthetase [Corynebacterium efficiens YS-314]
 gi|259164667|gb|EEW49221.1| lipoic acid synthetase [Corynebacterium efficiens YS-314]
          Length = 339

 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 41/217 (18%), Positives = 77/217 (35%), Gaps = 20/217 (9%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC++   R   + R   + +  A  + +  +   T+ G      R    D    
Sbjct: 72  CSRRCDFCMINSARPEPLDR--GEPLRVAESVREMRLNYSTITGVT----RDDLPDEGAW 125

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
            +S+++  + E+     +           D L +       +  +    V     RI K 
Sbjct: 126 LYSEVVRKIHELNPNTGVENLVPDFSGKRDLLQEVFESRPEVFAHNLETV----PRIFKR 181

Query: 306 MNRRHTAYEYRQIIDRIRSVRP-DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
           +     A+ Y + +D IR  R   +   S+ I+G  GET ++    +  +   G      
Sbjct: 182 IRP---AFRYDRSLDVIRQARDFGLVTKSNLILGM-GETREEISEALRDLHSAGTDIITI 237

Query: 365 FKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQ 401
            +Y  R G     +   ++  VK E  L L  +  E 
Sbjct: 238 TQYL-RPG----PLFHPIERWVKPEEFLELSDEAYEI 269


>gi|297565282|ref|YP_003684254.1| lipoic acid synthetase [Meiothermus silvanus DSM 9946]
 gi|296849731|gb|ADH62746.1| lipoic acid synthetase [Meiothermus silvanus DSM 9946]
          Length = 335

 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 30/182 (16%), Positives = 66/182 (36%), Gaps = 9/182 (4%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V             + +  A+ + + G+  + L   +    R    DG   
Sbjct: 96  CTRACKFCAVDTGNPKGW-VDPLEPLHVAQAVAEMGLRYVVLTSVD----RDDLKDGGAS 150

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
            F++++  +      V++   T    D    L      +D  +      +++      K 
Sbjct: 151 HFAEVVRQIKLRDQEVKVETLTP---DFRGQLKDVETVVDSGVDVFAHNLETVRRLTPKV 207

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
            + R T  +  ++++  +  RP +   S  ++G  GE+  + R  M  +  +G       
Sbjct: 208 RDPRATYEQSLRVLEHAKRYRPKMLTKSSLMLGL-GESAAEIRQAMRDLRAVGVDILTLG 266

Query: 366 KY 367
           +Y
Sbjct: 267 QY 268


>gi|210623797|ref|ZP_03294057.1| hypothetical protein CLOHIR_02008 [Clostridium hiranonis DSM 13275]
 gi|210153379|gb|EEA84385.1| hypothetical protein CLOHIR_02008 [Clostridium hiranonis DSM 13275]
          Length = 522

 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 37/305 (12%), Positives = 98/305 (32%), Gaps = 21/305 (6%)

Query: 72  IREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ 131
             EK   +    + +       +        ++    V      ++    P+  V     
Sbjct: 96  FVEKLEREDSLAVKKAARWSIKKSMFQALKQIMPDSYVP---WGDLTGIKPVKIVHNLIS 152

Query: 132 TYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCT 191
                 E+L   +    + D    +     +           + ++ +++I   C   C 
Sbjct: 153 DGMDDEEVLNYLKEEHFITDEKAELALDIAKRERGFIYPLSDKKISLYVSIPF-CPTRCY 211

Query: 192 FCVVP----YTRGIEISRSLSQVVDEARKLID------NGVCEITLLGQNVNAWRGKGLD 241
           +C  P       G    + + +++DEAR   +        +    + G    A   + +D
Sbjct: 212 YCSFPSNSIQKYGNLRRKYVERLLDEARGTAEIIKNRGWKIETFYIGGGTPTALDAEDMD 271

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
                  + L+ + +   +         P  +++  ++        +  + +  Q+ +D 
Sbjct: 272 Y----MIENLFEIFDFSKIKEFTVEAGRPDTITEEKLRVLKKHG--VNRISINPQTMNDS 325

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
            L+ + R+H+  + +      R +  D  I+ D I+G   E  +  + T++ + K+    
Sbjct: 326 TLEKIGRKHSVEDIKTCFKMARELGFD-NINMDIILGLVDEDAEMVKNTLEEIKKLSPES 384

Query: 362 AFSFK 366
                
Sbjct: 385 LTVHT 389


>gi|188997369|ref|YP_001931620.1| oxygen-independent coproporphyrinogen III oxidase
           [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188932436|gb|ACD67066.1| oxygen-independent coproporphyrinogen III oxidase
           [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 462

 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 47/262 (17%), Positives = 93/262 (35%), Gaps = 29/262 (11%)

Query: 158 DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC--VVPYTRGIEISRSLSQVVDEAR 215
           DK E +  +     RK  ++ +  I   C+  C FC   V  TR  E+           +
Sbjct: 39  DKAEYVKKIIQSNERKTPLSLYFHIPF-CENACHFCGCNVIITRRKEV----------VK 87

Query: 216 KLIDNGVCEITLLGQNVNAWRGK---GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
             +D+   E+ L    ++A   K      G             E+   ++ R+      +
Sbjct: 88  PYLDHIYKEMDLYKTLIDANNRKVVQLHWGGGTPNYLSDEETVELFDEIKKRFQIDEKAE 147

Query: 273 MSDCLIKAHGDLDVLM-------PYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
           +S  +   H D D +              +Q  + ++ +++NR         ++   R  
Sbjct: 148 ISIEIDPRHVDRDRIFLLRKIGFNRASFGIQDFNPKVQQAVNRIQPEEMILNVMKWFREA 207

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
             + +++ D I G P +T + F  T+D   K+   +   F ++         +   +DE 
Sbjct: 208 GFE-SVNIDLIYGLPYQTLETFSDTIDKTIKLNPDRIAVFNFAYVPWLK--RLQRNIDEK 264

Query: 386 V---KAERLLCLQKKLREQQVS 404
                 E+L  LQ  + +   S
Sbjct: 265 TLPPPEEKLKILQMTIEKLTKS 286


>gi|50118989|ref|YP_048156.1| coproporphyrinogen III oxidase [Pectobacterium atrosepticum
           SCRI1043]
 gi|49609515|emb|CAG72948.1| oxygen-independent coproporphyrinogen III oxidase [Pectobacterium
           atrosepticum SCRI1043]
          Length = 457

 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 45/248 (18%), Positives = 93/248 (37%), Gaps = 20/248 (8%)

Query: 173 KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNV 232
           +R ++ ++ I   C + C FC        +  +   + +D     I          G+ V
Sbjct: 50  QRPLSLYIHIPF-CHRLCYFCGCNKLVTRQQHK-ADEYLDVLELEIRQ--RAPLFAGRTV 105

Query: 233 NAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL----- 287
                 G  G     + +   +S +  L+R  ++ S   ++S  +     +LDVL     
Sbjct: 106 TQLHWGG--GTPTYLNKV--QISRLMSLLRELFSFSEQAELSLEVDPREIELDVLDHLRA 161

Query: 288 --MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS-DFIVGFPGETD 344
                L + VQ  +  + K +NR         +I+R +++      ++ D I G P +T 
Sbjct: 162 EGFNRLSMGVQDFNKDVQKLVNREQDEDFIFALIERAKAL--GFTSTNIDLIYGLPKQTP 219

Query: 345 DDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQV 403
           + F  T+  V ++   +   F Y+       +   ++  D     ++L  LQ+ +     
Sbjct: 220 ESFAFTLQRVAELSPHRLSVFNYAHLPSLFAAQRKIKDADLPSAEQKLDILQQTIGSLTQ 279

Query: 404 SFNDACVG 411
           S     +G
Sbjct: 280 SGYQ-FIG 286


>gi|209515195|ref|ZP_03264063.1| lipoic acid synthetase [Burkholderia sp. H160]
 gi|209504449|gb|EEA04437.1| lipoic acid synthetase [Burkholderia sp. H160]
          Length = 331

 Score = 53.8 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 39/216 (18%), Positives = 74/216 (34%), Gaps = 17/216 (7%)

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEG-CDKFCTFCVVPYTRGIEISRSLSQVVD 212
           +SV ++    +I +    R     A   I  G C + C FC V    G   +    +   
Sbjct: 72  HSVCEEAMCPNIGECFAQRT----ATFMIMGGICTRRCAFCDV--AHGRPQALDDDEPAR 125

Query: 213 EARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
            A  +   G+  + +   +    R    DG    F+  +  + E    +R+   T   R 
Sbjct: 126 LADAVAALGLRYVVITSVD----RDDLRDGGAAHFARCIALVRERVAGIRVEILTPDFRG 181

Query: 273 MSDCLIKAH-GDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAI 331
             D  + A  G    +  +    V S    + ++       +   +++ R++     +  
Sbjct: 182 RIDRALDALSGAWPDVFNHNIETVPS----LYRAARAGADYHGSLELLSRVKRRNAAVLT 237

Query: 332 SSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
            S  + G  GETD +  ATM  +           +Y
Sbjct: 238 KSGLMTGL-GETDSELLATMRDLRAHDVDVLTIGQY 272


>gi|178847575|pdb|3CIW|A Chain A, X-Ray Structure Of The [fefe]-Hydrogenase Maturase Hyde
           From Thermotoga Maritima
 gi|259090312|pdb|3IIX|A Chain A, X-Ray Structure Of The Fefe-Hydrogenase Maturase Hyde From
           T. Maritima In Complex With Methionine And
           5'deoxyadenosine
          Length = 348

 Score = 53.8 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 40/249 (16%), Positives = 86/249 (34%), Gaps = 25/249 (10%)

Query: 138 ELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKR-------GVTAFLTIQEGCDKFC 190
           E LER  F + V+    S+ D+    ++       +R        + A +     C K C
Sbjct: 8   EKLERREFTREVLKEALSINDRGFNEALFKLADEIRRKYVGDEVHIRAIIEFSNVCRKNC 67

Query: 191 TFCVVPYTRGIEISR--SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS 248
            +C +            +  ++V+ AR  +  G   I L         G+         S
Sbjct: 68  LYCGLRRDNKNLKRYRMTPEEIVERARLAVQFGAKTIVLQS-------GEDPYXMPDVIS 120

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
           D++  + ++ G+         PR+  +   +A  D         L  ++ +  + + +  
Sbjct: 121 DIVKEIKKM-GVAVTLSLGEWPREYYEKWKEAGADR------YLLRHETANPVLHRKLRP 173

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
             +       +  ++ +       +  +VG PG+T DD    +  + +  +       + 
Sbjct: 174 DTSFENRLNXLLTLKEL--GYETGAGSMVGLPGQTIDDLVDDLLFLKEHDFDMVGIGPFI 231

Query: 369 PRLGTPGSN 377
           P   TP +N
Sbjct: 232 PHPDTPLAN 240


>gi|2226152|emb|CAA74441.1| hypothetical protein [Bacillus subtilis subsp. subtilis str. 168]
          Length = 346

 Score = 53.8 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 40/214 (18%), Positives = 80/214 (37%), Gaps = 19/214 (8%)

Query: 166 VDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR-----GIEIS------RSLSQVVDEA 214
           V   Y  K  V+ ++ I   C   C +C  P        G   S        + ++ +  
Sbjct: 6   VPDLYRVKDEVSIYIGIPF-CPTKCAYCTFPAYAIQGQAGRVGSFLWGLHYEMQKIGEWL 64

Query: 215 RKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMS 274
           ++  D  V  I   G    +   + +D     + +++ S  ++K +  +      P  ++
Sbjct: 65  KEH-DVKVTTIYFGGGTPTSITAEEMDL---LYEEMVRSFPDVKNIREITVEAGRPDTIT 120

Query: 275 DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSD 334
           +  +      D+    + +  QS  +  LK++ R HT  E  +     R    +  I+ D
Sbjct: 121 EEKLAVLNKYDI--DRISINPQSYENETLKAIGRHHTVEETIEKYHLSRQHGMN-NINMD 177

Query: 335 FIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
            I+G PGE   +FR ++   +K+          S
Sbjct: 178 LIIGLPGEGVKEFRHSLSETEKLMPESLTVHTLS 211


>gi|14591690|ref|NP_143778.1| hypothetical protein PH1949 [Pyrococcus horikoshii OT3]
 gi|3258393|dbj|BAA31076.1| 537aa long hypothetical protein [Pyrococcus horikoshii OT3]
          Length = 537

 Score = 53.8 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 38/212 (17%), Positives = 74/212 (34%), Gaps = 19/212 (8%)

Query: 69  TCHIREKAAEKVYSFLGRIRNLKNS----RIKEGGDLLVVVAGCVAQA--EGEEILRRSP 122
           T         K Y+++ + R L       R ++G    +VV G  A      +E      
Sbjct: 111 TMMFTNGGQWKSYTYV-KFRELVEKINSVRERKGLKFKIVVGGPGAWQVDMRKEEREELK 169

Query: 123 IVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTI 182
           I +VV+G +  + + ++ E    G            K E +  +             + +
Sbjct: 170 IDHVVMG-EAEHVICKIFEDIINGSADETIIIRKGPKIEEIPTIVAP-----SYKGLVEV 223

Query: 183 QEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG 242
             GC + C FC  P  R       L ++  E R  I+ G+    L  +++  ++ +    
Sbjct: 224 MRGCGRGCRFCE-PNLRVA-RYMPLEKIEKEIRVNINAGIDHAWLHSEDIFLYKVED--- 278

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMS 274
            K  F     ++ E+  + R      +P   +
Sbjct: 279 -KKNFYPNAEAVIELFEMARQYTKNVNPTHGT 309


>gi|307709061|ref|ZP_07645520.1| coproporphyrinogen III oxidase [Streptococcus mitis SK564]
 gi|307620007|gb|EFN99124.1| coproporphyrinogen III oxidase [Streptococcus mitis SK564]
          Length = 376

 Score = 53.8 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 41/200 (20%), Positives = 77/200 (38%), Gaps = 17/200 (8%)

Query: 173 KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL--SQVVDEARKLIDNGVCEITLLGQ 230
           K+  +A++ I   C + C +C             +    +++E R      +  + + G 
Sbjct: 3   KKPTSAYVHIPF-CTQICYYCDFSKVFIKNQPVDIYLEHLLEEFRSYDIQKLRTLYIGGG 61

Query: 231 NVNAWRGKGLD--GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLM 288
              A     L+   +  T +  L +L E+          ++P D+    I    +    +
Sbjct: 62  TPTALSASQLEVLLKGLTKNLDLSALEELT-------IEANPGDLDADKIAVLKNS--AV 112

Query: 289 PYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFR 348
             + L VQ+  D++LK + R H   +  + IDR++    D  IS D I   PG+T +  +
Sbjct: 113 NRVSLGVQTFDDKMLKKIGRSHLVKDIYENIDRLKLAGFD-NISIDLIYALPGQTMEQVK 171

Query: 349 ATMDLVDKIGYAQAFSFKYS 368
             +     IG        YS
Sbjct: 172 ENVA--KAIGLDIPHMSLYS 189


>gi|298346288|ref|YP_003718975.1| coproporphyrinogen dehydrogenase [Mobiluncus curtisii ATCC 43063]
 gi|298236349|gb|ADI67481.1| coproporphyrinogen dehydrogenase [Mobiluncus curtisii ATCC 43063]
          Length = 439

 Score = 53.8 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 30/137 (21%), Positives = 49/137 (35%), Gaps = 2/137 (1%)

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304
                +L  LSE  GLV     T+     +                +   +QS    +L 
Sbjct: 81  TDLVRVLRGLSETFGLVPGAEITTEANPDTVTPQYLEALAAGGFTRVSFGMQSAVPAVLA 140

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
           ++NR H        +   R+    + +S D I G PGE+  D+R ++D   ++G      
Sbjct: 141 TLNRTHQQKHLVAGVRAARAQ--GLEVSVDLIYGTPGESLADWRPSLDAALELGVDHVSC 198

Query: 365 FKYSPRLGTPGSNMLEQ 381
           +      GT     L Q
Sbjct: 199 YALVIEPGTALGRALAQ 215


>gi|187778363|ref|ZP_02994836.1| hypothetical protein CLOSPO_01955 [Clostridium sporogenes ATCC
           15579]
 gi|187771988|gb|EDU35790.1| hypothetical protein CLOSPO_01955 [Clostridium sporogenes ATCC
           15579]
          Length = 476

 Score = 53.8 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 45/332 (13%), Positives = 109/332 (32%), Gaps = 46/332 (13%)

Query: 127 VVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFE-----RLSIVDGGYNRKRGVTAFLT 181
           +VG +      +L+ +    K ++D      +  E      + I +   +        ++
Sbjct: 91  LVGIRPSKIALDLMNKGMEEKEIIDWFSKHRNTREDKTKLCIDIANMEKSIVNKDKNTIS 150

Query: 182 IQEG---CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLG---QN---- 231
           +  G   C   C +C          S  + +  +     +     E+ +L    Q+    
Sbjct: 151 VYVGMPFCPTRCLYCSFT-------SNPIGKCKNLVEPYLKALYYEMDMLSKYIQHKGLK 203

Query: 232 VNAWRGKGLDGEKCTFSDLLYSLSEI-------KGLVRLRYTTSHPRDMSDCLIKAHGDL 284
           +      G        +    +L++I       K +         P  +++  + +    
Sbjct: 204 IQCVYFGGGTPTSVNNAQFEKTLNKIYYNFVHNKEVEEFTVECGRPDSITEEKLLSMKKY 263

Query: 285 DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETD 344
           +  +  + +  Q+ ++  LK++ R H+  +  + I  +        I+ D IVG PGE  
Sbjct: 264 N--VHRISINPQTMNNSTLKNIGRTHSVED-IERIYHLAKSIGFKNINMDLIVGLPGEGI 320

Query: 345 DDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-----NMLEQVDENVKAERLLCLQKKLR 399
           ++ + T   + K+          S + G+         M   + +  +  R+    + L 
Sbjct: 321 EEIKNTCRRIKKLNPDNITVHGMSIKRGSILHEKLVNKMEFNIPKQEELNRMYEETEVLA 380

Query: 400 E------QQVSFNDACVGQIIEVLIEKHGKEK 425
           +        +      +G +  V    + KE 
Sbjct: 381 KDLGMKPYYMYRQKNMLGNMENV---GYSKEN 409


>gi|186475369|ref|YP_001856839.1| coproporphyrinogen III oxidase [Burkholderia phymatum STM815]
 gi|184191828|gb|ACC69793.1| oxygen-independent coproporphyrinogen III oxidase [Burkholderia
           phymatum STM815]
          Length = 470

 Score = 53.8 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 39/231 (16%), Positives = 71/231 (30%), Gaps = 21/231 (9%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           CD  C +C          SRS    +   ++ I            +      +   G   
Sbjct: 73  CDTVCFYCGCNKVVTRNRSRSAPY-LQRLKREIALQAECF-----DTARPVSQLHWGGGT 126

Query: 246 TFSDLLYSLSEIKGLVRLRYTT-SHPRDMSDCLIKAHGDLDVLMPYL--------HLPVQ 296
                   ++E+    R  +   S         +         + +L         L VQ
Sbjct: 127 PTFLSHDEMTELMATTREHFLLRSDAEGEFSIEVDPREAPPKTIVHLRNLGFNRLSLGVQ 186

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
                + +++NR         ++   R+     +I  D I G P +T   F  T+D + +
Sbjct: 187 DFDPVVQRAINRIQPLEMTAGVMRAARATGFH-SIGVDLIYGLPYQTVSSFSKTLDTMLE 245

Query: 357 IGYAQAFSFKYSPRLGTPGSNMLEQVDENV---KAERLLCLQKKLREQQVS 404
           +   +   F Y+         M  Q+D +     AERL  LQ  +     +
Sbjct: 246 LAPDRLSVFGYAHMPQL--FKMQRQMDASTLPSPAERLAILQLVVERLTDA 294


>gi|327480719|gb|AEA84029.1| oxygen-independent coproporphyrinogen III oxidase [Pseudomonas
           stutzeri DSM 4166]
          Length = 462

 Score = 53.8 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 43/250 (17%), Positives = 84/250 (33%), Gaps = 20/250 (8%)

Query: 157 EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARK 216
           ED +   +       + + ++ ++ I   C   C +C         I+    + V+    
Sbjct: 37  EDDYRAAAARSNQAQQPKPLSVYIHIPF-CKSLCYYC----ACNKIITHKTERAVEYLEY 91

Query: 217 LIDNGVCEITLLG-----QNVNAWRGKGLDGEKCTFSDLLYSLSEI----KGLVRLRYTT 267
           L      +  L         ++   G          +DL+ SL +               
Sbjct: 92  LKREIAMQGALFDRSRKLTQLHLGGGTPTYFTSEQLADLMASLHQAFNMDDSDSHEFSLE 151

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
             PR ++   I     L      L   VQ   +++  ++NR  T  + R+++   R  R 
Sbjct: 152 VDPRTVTPEQIHGLRKLG--FNRLSFGVQDFDEQVQIAVNRIQTEEQTRELVQAARDARF 209

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT-PGSNM--LEQVDE 384
             ++S D I G P +T   F AT+  +  I   +  ++ Y+          +   E +  
Sbjct: 210 K-SVSVDLIYGLPLQTVASFDATLSKIIDIRPDRIAAYSYAHLPDLVRAQKLIRPEDMPP 268

Query: 385 NVKAERLLCL 394
             +   LL L
Sbjct: 269 PERKLELLEL 278


>gi|219870722|ref|YP_002475097.1| coproporphyrinogen III oxidase [Haemophilus parasuis SH0165]
 gi|219690926|gb|ACL32149.1| coproporphyrinogen III oxidase [Haemophilus parasuis SH0165]
          Length = 455

 Score = 53.8 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 46/241 (19%), Positives = 84/241 (34%), Gaps = 31/241 (12%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C K C FC         I+R   +V      L         L           G  G   
Sbjct: 60  CHKLCYFC----ACNKIITRHQHKVDIYLDYLEKEIKYRADLFKDRTVTQIHWG--GGTP 113

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL-------MPYLHLPVQSG 298
           T+ D   SL  +  ++R  +  S   ++S  +     +L++L          + + +Q  
Sbjct: 114 TYLDEDQSL-RLMAMLRKHFNVSDNAEISIEMDPREIELEMLEHLREIGFNRISMGIQDF 172

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS-DFIVGFPGETDDDFRATMDLVDKI 357
           +  + K +NR         ++ R R +      ++ D I G P +T + F  T++ V ++
Sbjct: 173 NKEVQKLVNREQDEEFIFALMKRAREL--GFTSTNIDLIYGLPKQTVESFMFTLERVIQL 230

Query: 358 GYAQAFSFKYSPRLGTPGSNMLEQVDENVKAE-------RLLCLQKKLREQQVSFNDACV 410
              +   F Y+       S    Q+   +K E       +L  LQK +     +     +
Sbjct: 231 NPDRMSVFNYAHLP----SRFAAQI--KIKDEMLPAPETKLEILQKTIETLGNAGYK-FI 283

Query: 411 G 411
           G
Sbjct: 284 G 284


>gi|149925310|ref|ZP_01913574.1| Radical SAM [Limnobacter sp. MED105]
 gi|149825427|gb|EDM84635.1| Radical SAM [Limnobacter sp. MED105]
          Length = 624

 Score = 53.8 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 33/198 (16%), Positives = 71/198 (35%), Gaps = 25/198 (12%)

Query: 180 LTIQEGCDKF-CTFCVVPYTRGIEISR----SLSQVVDEARKLIDNGVCEITLLGQNVNA 234
           LT+  GC    C+FC V       ISR    + +++V+   +++          GQ    
Sbjct: 348 LTVAHGCYWKKCSFCDVSL---DYISRYENATATELVNRIEQIVAE-------TGQTGFH 397

Query: 235 WRGKGLDGE--KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLH 292
           +  +    +  K    +L+     I     +R+     +  +  L +   D   +     
Sbjct: 398 FVDEAAPPKALKALAQELIARNVSISWWGNIRF----EKSFTPELCQLLADSGCIAVSG- 452

Query: 293 LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352
             ++  SDR+L  M +  +  +  ++          + + +  + GFP +T  D    ++
Sbjct: 453 -GLEVASDRLLNLMKKGVSVEQVARVTKGFTDA--GVLVHAYLMYGFPTQTVQDTVDALE 509

Query: 353 LVDKIGYAQAFSFKYSPR 370
            V ++         Y  R
Sbjct: 510 YVRQLFAEGCIQSGYFHR 527


>gi|328951088|ref|YP_004368423.1| Radical SAM domain protein [Marinithermus hydrothermalis DSM 14884]
 gi|328451412|gb|AEB12313.1| Radical SAM domain protein [Marinithermus hydrothermalis DSM 14884]
          Length = 376

 Score = 53.8 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 38/257 (14%), Positives = 83/257 (32%), Gaps = 41/257 (15%)

Query: 162 RLSIVDGGYNRKRGVTAFLTIQ---------------EGCD-KFCTFCVVPYTRGIEISR 205
           R +       R+R +  +  I                EGC    CTFC   Y      +R
Sbjct: 101 RWTPERLWAERERFLKVYKPISILPPDQYFAVVLQATEGCTWNRCTFCTF-YADRPFRAR 159

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG------ 259
           +L +    A  +          LG+ +   +G  L  +    +  L  L+ +        
Sbjct: 160 NLPEFTAHAEAVRA-------FLGRGLALRKGIFL-ADGNALALSLNRLAPLVEAARATF 211

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVL-MPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
             R  Y            ++    L  + +  +++ +++G D +L  +N+  +  E  + 
Sbjct: 212 PDRPVYGFIDVFTGERHTLEEWRALKTMGLERVYVGMETGLDALLAFLNKPGSRAELVRF 271

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP--RLGT--- 373
           +  ++     + +     VG     +   +AT++ + ++          SP     T   
Sbjct: 272 VGELKQAGLGVGLIVMVGVGGRAYRERHAQATLEALREMPLDAKDLVYVSPFVEHPTSAY 331

Query: 374 ----PGSNMLEQVDENV 386
                 + +   + E V
Sbjct: 332 ARLREAAGLEPMLPEEV 348


>gi|326569104|gb|EGE19167.1| lipoyl synthase [Moraxella catarrhalis BC8]
          Length = 354

 Score = 53.8 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 69/208 (33%), Gaps = 12/208 (5%)

Query: 161 ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN 220
           E  +  +       G   F+ + + C + C FC V + R   +     +    A  ++  
Sbjct: 76  EEAACPNLPQCFGDGTATFMIMGDICTRRCPFCEVAHGRPNPL--DKDEPKHTAETILGL 133

Query: 221 GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKA 280
           G+    +   +    R    DG    F D++     +     +       R      +  
Sbjct: 134 GLKYAVITSVD----RDDLKDGGAGHFVDVINESKALSPNCLIEILVPDFRGREQVALDL 189

Query: 281 HGDL-DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGF 339
                  +  +    V     R+ K+            ++ + ++ RPD+A    F+VG 
Sbjct: 190 LTQTAPDVFNHNIETV----PRLYKAFRPGSDYEHSLSLLKQYKARRPDVATKCGFMVGL 245

Query: 340 PGETDDDFRATMDLVDKIGYAQAFSFKY 367
            GET+D+  A +D +           +Y
Sbjct: 246 -GETEDEVYALLDDLKAHDVDIITIGQY 272


>gi|326798467|ref|YP_004316286.1| oxygen-independent coproporphyrinogen III oxidase [Sphingobacterium
           sp. 21]
 gi|326549231|gb|ADZ77616.1| oxygen-independent coproporphyrinogen III oxidase [Sphingobacterium
           sp. 21]
          Length = 383

 Score = 53.8 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 43/237 (18%), Positives = 86/237 (36%), Gaps = 28/237 (11%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEK 244
           C + C +C   +      S S+    +    +     +    L    +N     G     
Sbjct: 11  CKQACHYCDFHF------STSIKYKNEMLEAMAKELRLQSSYLHTDRINTIYFGGGTPSI 64

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCL---------IKAHGDLDVLMPYLHLPV 295
              S++ + L E        Y  S+  +++            I+A     +      + +
Sbjct: 65  LEASEISFLLDEA----SRHYDISNTVEITLEANPDDLGKTKIEAFRRTSI--NRFSIGI 118

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
           QS  D  LK MNR HTA E    I R++    D  I++D I G+P  TD+ +   +  + 
Sbjct: 119 QSFYDEDLKWMNRAHTAQEADSAIKRVQDAGFD-DITADLIYGYPLLTDEKWLNNIQKLV 177

Query: 356 KIGYAQAFSFKYSPRLGTPGSNM-----LEQVDENVKAERLLCLQKKLREQQVSFND 407
           ++      ++  +    T  +++      +++D+   A + L L + L        +
Sbjct: 178 QLHIPHISAYSLTVEPKTALAHLIKVGKYKKMDDEQAAAQFLQLIETLDGYAYEHYE 234


>gi|238755053|ref|ZP_04616401.1| Lipoyl synthase [Yersinia ruckeri ATCC 29473]
 gi|238706757|gb|EEP99126.1| Lipoyl synthase [Yersinia ruckeri ATCC 29473]
          Length = 321

 Score = 53.8 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 42/257 (16%), Positives = 85/257 (33%), Gaps = 17/257 (6%)

Query: 118 LRRSPIVNVVVGPQTYYRLPELLERAR-------FGKRVVDTDYSVEDKFERLSIVDGGY 170
           +   P+  VV   Q   R PE ++           G +       +    E  S  +   
Sbjct: 19  MALIPVKTVVTERQELLRKPEWMKIKLPADSSRIQGIKAAMRKNGLHSVCEEASCPNLSE 78

Query: 171 NRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQ 230
               G   F+ +   C + C FC V + R        ++    A+ + D G+  + +   
Sbjct: 79  CFNHGTATFMILGAICTRRCPFCDVAHGRPTL--PDANEPEKLAQTIKDMGLRYVVITSV 136

Query: 231 NVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY 290
           +    R    DG    F+D + ++      +++       R   D  +          P 
Sbjct: 137 D----RDDLRDGGAQHFADCIAAIRAKNPTIKIETLVPDFRGRMDRALDILTVTP---PD 189

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
           +         R+ + +          ++++R +   P+I   S  +VG  GET+ +    
Sbjct: 190 VFNHNLENVPRVYRQVRPGANYEWSLKLLERFKEAHPNIPTKSGLMVGL-GETNAEIVEV 248

Query: 351 MDLVDKIGYAQAFSFKY 367
           M  + + G       +Y
Sbjct: 249 MRDLRRHGVTMLTLGQY 265


>gi|178847576|pdb|3CIX|A Chain A, X-Ray Structure Of The [fefe]-Hydrogenase Maturase Hyde
           From Thermotoga Maritima In Complex With Thiocyanate
          Length = 348

 Score = 53.8 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 40/249 (16%), Positives = 86/249 (34%), Gaps = 25/249 (10%)

Query: 138 ELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKR-------GVTAFLTIQEGCDKFC 190
           E LER  F + V+    S+ D+    ++       +R        + A +     C K C
Sbjct: 8   EKLERREFTREVLKEALSINDRGFNEALFKLADEIRRKYVGDEVHIRAIIEFSNVCRKNC 67

Query: 191 TFCVVPYTRGIEISR--SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS 248
            +C +            +  ++V+ AR  +  G   I L         G+         S
Sbjct: 68  LYCGLRRDNKNLKRYRMTPEEIVERARLAVQFGAKTIVLQS-------GEDPYYMPDVIS 120

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
           D++  + ++ G+         PR+  +   +A  D         L  ++ +  + + +  
Sbjct: 121 DIVKEIKKM-GVAVTLSLGEWPREYYEKWKEAGADR------YLLRHETANPVLHRKLRP 173

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
             +       +  ++ +       +  +VG PG+T DD    +  + +  +       + 
Sbjct: 174 DTSFENRLNXLLTLKEL--GYETGAGSMVGLPGQTIDDLVDDLLFLKEHDFDMVGIGPFI 231

Query: 369 PRLGTPGSN 377
           P   TP +N
Sbjct: 232 PHPDTPLAN 240


>gi|288574644|ref|ZP_06393001.1| Radical SAM domain protein [Dethiosulfovibrio peptidovorans DSM
           11002]
 gi|288570385|gb|EFC91942.1| Radical SAM domain protein [Dethiosulfovibrio peptidovorans DSM
           11002]
          Length = 610

 Score = 53.8 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 47/287 (16%), Positives = 99/287 (34%), Gaps = 46/287 (16%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGK 238
           + +  GC + C FC           RS  +V++  +KL +  G  E++L+          
Sbjct: 256 VEVFRGCSRGCRFCQAGMVYRPIRERSPEKVLETVKKLAEATGWEEVSLVS--------- 306

Query: 239 GLDGEKCTFSDLLYSLSEIKG--LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY-LHLPV 295
                 C +S +  ++  +K     R    +     M +  +     LDV+    L L  
Sbjct: 307 ---LASCDYSRIGDAIEILKPYLDARGMKLSLPSLRMDNFALSLAAGLDVMKKSGLTLAP 363

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL-- 353
           ++GS R+   +N+  +  +    +        +  +   F++G P ET++D    + +  
Sbjct: 364 EAGSQRLRDVINKGVSEEDVETTLKAAFEHGWN-RMKLYFMMGLPTETEEDLAGILRIAD 422

Query: 354 --------VDKIGYAQAFSFKYSPRLGTP---------------GSNMLEQVDENVKAER 390
                   + K G        + P+  TP               G  +  +V +   + R
Sbjct: 423 RAAKIGRSMKKRGQISVSVAGFVPKPHTPFQWEAQDGIETLREKGRWLKGRVRDKKISLR 482

Query: 391 LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQS 437
               ++   E   +  D  +G +    IE+  +   +  G +     
Sbjct: 483 YHEPEQTFLEGVFARGDRRLGDV----IERAWRLGARFDGWTETFDL 525


>gi|86605425|ref|YP_474188.1| lipoyl synthase [Synechococcus sp. JA-3-3Ab]
 gi|86553967|gb|ABC98925.1| lipoic acid synthetase [Synechococcus sp. JA-3-3Ab]
          Length = 290

 Score = 53.8 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 28/182 (15%), Positives = 62/182 (34%), Gaps = 11/182 (6%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C+FC V    G        +    A  +   G+  + L        R    D    
Sbjct: 62  CTRACSFCQV--ASGRPAPLDPQEPEKVAEAVELLGLRYVVLTSV----ARDDLPDQGSG 115

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
            F +++ ++      +++   T   R   DC+ +          +    V+  S  + +S
Sbjct: 116 RFVEVMEAIRRRCPGIQIEVLTPDFRGERDCIARVVAARPTCYNHNIETVRRLSQAVRRS 175

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
                      +++  ++ + P +   S  ++G  GET  +   T   +  +G  +    
Sbjct: 176 SGY----DLSLRVLRTVKELDPGLPTKSGLMLG-HGETRAEVLETFRDLLAVGCDRLTLG 230

Query: 366 KY 367
           +Y
Sbjct: 231 QY 232


>gi|300727095|ref|ZP_07060514.1| radical SAM protein, family [Prevotella bryantii B14]
 gi|299775639|gb|EFI72230.1| radical SAM protein, family [Prevotella bryantii B14]
          Length = 305

 Score = 53.8 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 34/209 (16%), Positives = 82/209 (39%), Gaps = 12/209 (5%)

Query: 181 TIQEGCDKFCTFCVVPYTRGI--EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK 238
            I  G    CT+C            S+++++ +++ ++       ++  L          
Sbjct: 36  RISTG---GCTYCDNRTFNPSYCHRSKTITEQLEDGKEFFARKYPDMKYLA--YFQAYTN 90

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLD-VLMPYLHLPVQS 297
             D  +   +    +L ++  +V +   T  P  +SD L++   +L+      +   V++
Sbjct: 91  TYDTLEHLKAMYEEAL-KVPDVVGIVIGT-RPDCVSDELLQYLAELNQRTFVLVEYGVET 148

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
            +D  LK +NR H     ++ I  I+S +  + + +  I+G PGE   +      ++  +
Sbjct: 149 TNDETLKRINRGHDFECSKRAI--IKSHQLGLTVGAHIILGLPGEDAKESIRQASVISSL 206

Query: 358 GYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
                   +     GT  ++  ++   +V
Sbjct: 207 PIDILKIHQMQIIRGTILAHEYQEHPFHV 235


>gi|264677954|ref|YP_003277861.1| oxygen-independent coproporphyrinogen III [Comamonas testosteroni
           CNB-2]
 gi|262208467|gb|ACY32565.1| oxygen-independent coproporphyrinogen III [Comamonas testosteroni
           CNB-2]
          Length = 460

 Score = 53.8 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 30/190 (15%), Positives = 68/190 (35%), Gaps = 8/190 (4%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLS--QVVDEARKLIDNGVCEITLLGQ-NVNAWRGKGL-D 241
           C+  C +C           ++      +     +      +  L+ Q ++         D
Sbjct: 64  CESLCYYCACNKIVTKHHEKAAEYLDYLSRELAMHTEHCGKGQLVSQLHLGGGTPTFFSD 123

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
            E      L+    ++            PR +S+  ++A  D+      L   VQ     
Sbjct: 124 AELQQLMVLMREHFKLDPAGEYSIEV-DPRTVSNERLRALKDMG--FNRLSFGVQDFDPA 180

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
           + K+++R   A +   ++   R +   ++I+ D I G P +T + F  T+  V+++   +
Sbjct: 181 VQKAVHREQPAEQVFALVAEARRL-GFVSINVDLIYGLPRQTPESFARTLAQVNELRPDR 239

Query: 362 AFSFKYSPRL 371
              + Y+   
Sbjct: 240 IALYAYAHLP 249


>gi|148657973|ref|YP_001278178.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Roseiflexus sp. RS-1]
 gi|148570083|gb|ABQ92228.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Roseiflexus sp. RS-1]
          Length = 406

 Score = 53.8 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 41/210 (19%), Positives = 70/210 (33%), Gaps = 30/210 (14%)

Query: 186 CDKFCTFC--------------VVPYTRGIEIS-----RSLSQVVDEARKLIDNGVCEIT 226
           C + C +C               V        S     R+++  +     L    +    
Sbjct: 20  CHRRCAYCDFNTYANMEDRMEAYVTALCAELRSHAPLSRAVAPPLPMTADLTRAMLRPTI 79

Query: 227 LLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSH--PRDMSDCLIKAHGDL 284
            LG       G          + +L +   I  L     T        ++   ++A  DL
Sbjct: 80  FLG------GGTPSMLPDALMARILSAADAIVPLDSAEVTVECNPGTVLARDYLRALRDL 133

Query: 285 DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETD 344
              +  + L VQS  D  L+ + R HTA E     +  R+   + +I+ DFI G PG+T 
Sbjct: 134 G--VNRISLGVQSLHDPTLRVLGRIHTAAEAYASFNDARAAGFE-SINLDFIFGLPGQTV 190

Query: 345 DDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
           + +  T+  +   G      +       TP
Sbjct: 191 EQWEETLREIVTWGADHFALYALILEERTP 220


>gi|33866662|ref|NP_898221.1| lipoyl synthase [Synechococcus sp. WH 8102]
 gi|47115727|sp|Q7U4D9|LIPA1_SYNPX RecName: Full=Lipoyl synthase 1; AltName: Full=Lip-syn 1; AltName:
           Full=Lipoate synthase 1; AltName: Full=Lipoic acid
           synthase 1; AltName: Full=Sulfur insertion protein lipA1
 gi|33633440|emb|CAE08645.1| lipoic acid synthetase [Synechococcus sp. WH 8102]
          Length = 289

 Score = 53.8 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 32/198 (16%), Positives = 61/198 (30%), Gaps = 11/198 (5%)

Query: 175 GVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA 234
           G   FL +  GC + C +C +            ++       +   G+  + +   N   
Sbjct: 48  GTATFLIMGPGCTRACPYCDI-DFDKSVRELDPTEPERLGEAVARLGLKHVVITSVN--- 103

Query: 235 WRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP 294
            R    DG    F   +  + +   L  +           D L         ++ +    
Sbjct: 104 -RDDLPDGGATQFVACIEQVKQRSPLTTIELLIPDFCGNWDALATVMAAAPHVLNHNIET 162

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           V     R+ +    +       +++ R+R   P     S  +VG  GETDD+    +  +
Sbjct: 163 V----PRMYRLARPQGIYERSLELLQRVRDDWPRAYSKSGLMVGL-GETDDEVIDVLRDL 217

Query: 355 DKIGYAQAFSFKY-SPRL 371
                      +Y SP  
Sbjct: 218 RTHRVDIVTIGQYLSPGP 235


>gi|194337732|ref|YP_002019526.1| Radical SAM domain protein [Pelodictyon phaeoclathratiforme BU-1]
 gi|194310209|gb|ACF44909.1| Radical SAM domain protein [Pelodictyon phaeoclathratiforme BU-1]
          Length = 462

 Score = 53.8 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 40/233 (17%), Positives = 81/233 (34%), Gaps = 21/233 (9%)

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           K V+  DY    K  +   VDG        +  + +  GC   C+FCV P   G      
Sbjct: 151 KEVLALDYEKIAKASKREKVDGTK------SIPIYVTRGCPYECSFCVTPNFTGKL--YR 202

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
           + +  +  ++            G++   W     +    +   L  SL  IK        
Sbjct: 203 MQKPDELKKQFETAKKVFFNANGKSSKPWFMLCDENLGVSKKKLWESLDLIK-----ECN 257

Query: 267 TSHPRDMSDCLIKAHGDLDVL----MPYLHLPVQSGSDRILKSMNRRH--TAYEYRQIID 320
            +     S  L++    +  L       + +  +S     L++ N+ H  +A +Y ++I+
Sbjct: 258 INFSVFFSLPLLEDKETVKKLVEAGCIMVLVGFESIKQSTLEAYNKGHVNSAEKYSRLIE 317

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
             R     + +  +F++    ++ ++    +  V K           +P  GT
Sbjct: 318 ECRQA--GLNVQGNFLINPELDSFENMDDLVRFVGKNNVFMPIFQIITPYPGT 368


>gi|332702715|ref|ZP_08422803.1| hypothetical protein CHP01212 [Desulfovibrio africanus str. Walvis
           Bay]
 gi|332552864|gb|EGJ49908.1| hypothetical protein CHP01212 [Desulfovibrio africanus str. Walvis
           Bay]
          Length = 325

 Score = 53.8 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 27/139 (19%), Positives = 51/139 (36%), Gaps = 5/139 (3%)

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTT-SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
            G     ++LL  +S + GL  +   T     D     I A   +     +L + +QS  
Sbjct: 96  YGPAARLANLLKEISGLPGLAAISVGTRPDCLDREKLAILAGAGIPE--TWLDIGLQSSD 153

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
           +  L  + R H    +   +++  +    + + +  + G PGE + +F AT+  V  +  
Sbjct: 154 NATLARIGRGHNFACFASAVEQ--AAAFGLKVCAHVMAGLPGEGETEFLATVRTVSALPV 211

Query: 360 AQAFSFKYSPRLGTPGSNM 378
                       GT    M
Sbjct: 212 RGIKFHNLLVLQGTALETM 230


>gi|312621841|ref|YP_004023454.1| Radical SAM domain-containing protein [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312202308|gb|ADQ45635.1| Radical SAM domain protein [Caldicellulosiruptor kronotskyensis
           2002]
          Length = 471

 Score = 53.8 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 40/195 (20%), Positives = 84/195 (43%), Gaps = 17/195 (8%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVV-----------DEARKLIDNGVCEITLLGQNVNA 234
           C   C +C        E++R +  ++           ++  + ID     I  +     +
Sbjct: 165 CPTKCLYCSFSC---HEMTRQIKSLLGMYTDSIICELEKTYQKIDENKNRIVAIYFGGGS 221

Query: 235 WRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMP-YLHL 293
               G++  K  F++L  +L +   +  + +    P  +S+ L++   +L+  +   L +
Sbjct: 222 PAVLGIENIKKIFTNLFDNLEK-NCIQEITFEAGRPDTISEDLLEYLAELNRYLNIRLCI 280

Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
             Q+ +D  LK + R HT  + ++     +    +  I+SD I+G PGE ++D++ T+D 
Sbjct: 281 NPQTSNDNTLKIIGRNHTFEDIKKAFALTQEYGFN-NINSDVILGLPGENENDYKKTIDD 339

Query: 354 VDKIGYAQAFSFKYS 368
           V K+  A       S
Sbjct: 340 VLKLSPASITVHTLS 354


>gi|293374233|ref|ZP_06620561.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Turicibacter sanguinis PC909]
 gi|292647066|gb|EFF65048.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Turicibacter sanguinis PC909]
          Length = 378

 Score = 53.8 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 40/236 (16%), Positives = 83/236 (35%), Gaps = 25/236 (10%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEK 244
           CD  CT+C  P        R    +    ++        + L  QNV     + +  G  
Sbjct: 12  CDHICTYCDFPKLLTKGQ-RHAEYIEALIQE--------LKLYQQNVGFSNLQSIYIGGG 62

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL-------MPYLHLPVQS 297
              +  +  +  +   +  +   +  ++ S      +   D +       +    L VQ+
Sbjct: 63  TPTALSVEQIQPLFDFLTEQIQMNQIQEFSIEANPENLTRDKIQYLKAQGVNRFSLGVQT 122

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSV-RPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
             + +LK + R+H A E  Q +  ++     +I +  D I   PG+T D+ R  +  V  
Sbjct: 123 FHESLLKRIGRKHQAQEVIQAVANLKQCGIKNINL--DLIYAIPGQTLDELRDDLRQVIS 180

Query: 357 IGYAQAFSFKYSPRLGT--PGSNMLEQV---DENVKAERLLCLQKKLREQQVSFND 407
           +      ++       T    + M +Q+   D  ++A+      + L E      +
Sbjct: 181 LEVEHISAYSLIVEEHTQLYLAYMRDQIELTDNEIEAKMYEVTIETLTEAGYEHYE 236


>gi|225621006|ref|YP_002722264.1| radical SAM domain-containing protein [Brachyspira hyodysenteriae
           WA1]
 gi|225215826|gb|ACN84560.1| radical SAM domain protein [Brachyspira hyodysenteriae WA1]
          Length = 803

 Score = 53.8 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 46/247 (18%), Positives = 84/247 (34%), Gaps = 27/247 (10%)

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           V + +     K   + +V+G  NR       + I  GC   C FC+   T     +R++ 
Sbjct: 219 VENINEMPYVKKPLVPLVEGIQNRIS-----VEIARGCTHSCRFCLAGITYRPVRNRTIE 273

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDL--LYSLSEIKGLVRLRYT 266
           ++VD A + ++         G N         D        +  L +L E KG   L   
Sbjct: 274 KIVDIAMESLEA-------TGANTLNLFSLSADDYPHIGELIEYLQTLGEHKG-FSLSLP 325

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
           +                       L   ++ GS  + + +N+         I+  ++ + 
Sbjct: 326 SLRIDSFDKDTADRIAQFRK--TGLTFALEVGSHELREKINKEMDEDAIYNILADVQKMG 383

Query: 327 PDIAISSDFIVGF----PGETDDDFRATMDLVD----KIGYAQAFSFKYSPRLGTPGSNM 378
             I +   F++GF      E D+   A   ++     K+    A    + P+  TP  N 
Sbjct: 384 WKI-VKIYFMIGFTDNPDKEADEIIEALEKMIKVSKNKVKI-NAAINVFIPKPHTPLENN 441

Query: 379 LEQVDEN 385
            +  DE 
Sbjct: 442 NQLTDEE 448


>gi|332886046|gb|EGK06290.1| oxygen-independent coproporphyrinogen III oxidase [Dysgonomonas
           mossii DSM 22836]
          Length = 455

 Score = 53.8 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 37/216 (17%), Positives = 82/216 (37%), Gaps = 20/216 (9%)

Query: 165 IVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCE 224
           I++      + ++ ++ I   C   C +C          S+ L    +  ++ I+    E
Sbjct: 38  IIESNKQNPQHISIYIHIPF-CYHMCYYC-------GCNSQLLKD-KNVVKEYIETLKKE 88

Query: 225 ITLLGQNVNAWRGKG--LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHG 282
           I ++   ++  R       G     S  +  L EI  ++   +      +++      + 
Sbjct: 89  IRMVLPLLDHSRKISQIHYGGGTPTSQPVSVLKEINRIILSEFECIENPEIAIECHPGYL 148

Query: 283 DLD-------VLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDF 335
           D D            + + +Q  ++ +LK+  R+ +      II  +RS    I+++ DF
Sbjct: 149 DEDYWNDLINAGFNRISIGIQDFNEEVLKASARKPSRMAIEDIIHILRSK--GISVNMDF 206

Query: 336 IVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
           I G P +T + F  T+     +   +  +F Y+   
Sbjct: 207 IYGLPLQTPESFAETIRKAISLKPDRIVTFSYAHVP 242


>gi|311280467|ref|YP_003942698.1| lipoic acid synthetase [Enterobacter cloacae SCF1]
 gi|308749662|gb|ADO49414.1| lipoic acid synthetase [Enterobacter cloacae SCF1]
          Length = 321

 Score = 53.8 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 30/183 (16%), Positives = 67/183 (36%), Gaps = 12/183 (6%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V    G  ++   ++    A+ + D  +  + +   +    R    DG   
Sbjct: 94  CTRRCPFCDV--AHGRPVAPDANEPQKLAQTIADMALRYVVITSVD----RDDLRDGGAQ 147

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAH-GDLDVLMPYLHLPVQSGSDRILK 304
            F+D + ++ E    +++       R   D  ++        +  +    V     R+ +
Sbjct: 148 HFADCISAIREKSPSIKIETLVPDFRGRMDRALEILTATPPDVFNHNLENV----PRLYR 203

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
            +          ++++R +   P+I   S  +VG  GET+ +    M  + + G      
Sbjct: 204 QVRPGADYSWSLKLLERFKEAHPEIPTKSGLMVGL-GETNAEIVEVMRDLRRHGVTMLTL 262

Query: 365 FKY 367
            +Y
Sbjct: 263 GQY 265


>gi|298482084|ref|ZP_07000272.1| radical SAM protein, family [Bacteroides sp. D22]
 gi|298271641|gb|EFI13214.1| radical SAM protein, family [Bacteroides sp. D22]
          Length = 326

 Score = 53.8 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 37/201 (18%), Positives = 71/201 (35%), Gaps = 11/201 (5%)

Query: 188 KFCTFCVVPYTRGIEISRSLSQV---VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK 244
             CT+C           R+   +   ++E +    +   E+  L              E 
Sbjct: 45  GGCTYCNNQTFNPDYC-RTEKSITTQLEEGKCFFAHKYPEMKYLA---YFQAYTNTYAEL 100

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV-LMPYLHLPVQSGSDRIL 303
                       + G+V L   T  P  M + L++   +L+      +   ++S  D  L
Sbjct: 101 EGLKRKYEEALTVDGVVGLVIGT-RPDCMPESLLRYLEELNKHTFLMVEYGIESTCDETL 159

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           K +NR HT  +  + +   R+    I      I+G PGET D   A  +++  +  A   
Sbjct: 160 KRINRGHTYADTVEAVR--RTAACGILTGGHIILGLPGETHDTMVAQAEILSDLPLATLK 217

Query: 364 SFKYSPRLGTPGSNMLEQVDE 384
             +     GT  ++  ++  +
Sbjct: 218 IHQLQLIRGTRMAHEYDEAPD 238


>gi|295086688|emb|CBK68211.1| radical SAM protein, TIGR01212 family [Bacteroides xylanisolvens
           XB1A]
          Length = 324

 Score = 53.8 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 37/201 (18%), Positives = 71/201 (35%), Gaps = 11/201 (5%)

Query: 188 KFCTFCVVPYTRGIEISRSLSQV---VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK 244
             CT+C           R+   +   ++E +    +   E+  L              E 
Sbjct: 43  GGCTYCNNQTFNPDYC-RTEKSITTQLEEGKCFFAHKYPEMKYLA---YFQAYTNTYAEL 98

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV-LMPYLHLPVQSGSDRIL 303
                       + G+V L   T  P  M + L++   +L+      +   ++S  D  L
Sbjct: 99  EGLKRKYEEALTVDGVVGLVIGT-RPDCMPESLLRYLEELNKHTFLMVEYGIESTCDETL 157

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           K +NR HT  +  + +   R+    I      I+G PGET D   A  +++  +  A   
Sbjct: 158 KRINRGHTYADTVEAVR--RTAACGILTGGHIILGLPGETHDTMVAQAEILSDLPLATLK 215

Query: 364 SFKYSPRLGTPGSNMLEQVDE 384
             +     GT  ++  ++  +
Sbjct: 216 IHQLQLIRGTRMAHEYDEAPD 236


>gi|289641895|ref|ZP_06474051.1| Radical SAM domain protein [Frankia symbiont of Datisca glomerata]
 gi|289508304|gb|EFD29247.1| Radical SAM domain protein [Frankia symbiont of Datisca glomerata]
          Length = 536

 Score = 53.8 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 19/96 (19%), Positives = 27/96 (28%), Gaps = 2/96 (2%)

Query: 169 GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLL 228
                R          GC + C FC  P  RG     S   V          G+  I   
Sbjct: 222 PPPTVRAPFTCFETSRGCHRACAFCATP-IRGRYRYMSPDTVARHFAYFRSAGISNILFQ 280

Query: 229 GQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
             N+ +   +  +G     +     + EI  L R  
Sbjct: 281 EDNILSRMQRDGNGSP-LHAGGRDEVLEIFRLARAH 315


>gi|182420048|ref|ZP_02951282.1| radical SAM protein, family [Clostridium butyricum 5521]
 gi|237669566|ref|ZP_04529546.1| radical SAM protein, family [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|182376085|gb|EDT73672.1| radical SAM protein, family [Clostridium butyricum 5521]
 gi|237655010|gb|EEP52570.1| radical SAM protein, family [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 310

 Score = 53.8 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 30/178 (16%), Positives = 60/178 (33%), Gaps = 25/178 (14%)

Query: 188 KFCTFCVVPYTRGI---------EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK 238
             CTFC     RG           IS     V +       +G                 
Sbjct: 46  GGCTFC---SARGSGDFAGDRIMSISNQFDDVKEMMAHKWKSGKYIAYFQA------YTN 96

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYT--TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQ 296
                +        ++++  G+V L          +    L++       +  ++ L +Q
Sbjct: 97  TYAPVEELKRKYEEAINK-DGVVGLAIATRPDCLGEDVLDLLEEI--NKKIYVWVELGLQ 153

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           + +D   + +NR +T   + + +  ++S   +I      I G PGET +D   T++ +
Sbjct: 154 TSNDDTARKINRGYTLEVFDEAMKNLKSR--NIDTVVHAIFGLPGETKEDMFNTVEHI 209


>gi|167750819|ref|ZP_02422946.1| hypothetical protein EUBSIR_01801 [Eubacterium siraeum DSM 15702]
 gi|167656254|gb|EDS00384.1| hypothetical protein EUBSIR_01801 [Eubacterium siraeum DSM 15702]
 gi|291530686|emb|CBK96271.1| Fe-S oxidoreductase [Eubacterium siraeum 70/3]
 gi|291557805|emb|CBL34922.1| Fe-S oxidoreductase [Eubacterium siraeum V10Sc8a]
          Length = 616

 Score = 53.8 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 48/268 (17%), Positives = 93/268 (34%), Gaps = 31/268 (11%)

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           ++ +  D+      +   +        R V   + +  GC + C FC   +       +S
Sbjct: 231 RKQIIDDFDKVYTPDSFVVPYTQIVHDRSV---VEVLRGCIRGCRFCQAGFIYRPFREKS 287

Query: 207 LSQVVDEARKLID-NGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
              +V++ + L +  G  E++L    ++      ++G     +D+     +    V L  
Sbjct: 288 KETIVNQVKSLTETTGYDEVSLSS--LSTSDYSDIEG---LLNDITEYTDK--KGVNLSL 340

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
            +      SD ++K    +      L    ++GS R+   +N+  T     +   +I   
Sbjct: 341 PSLRIDKFSDEVVKKIKSVRR--SGLTFAPEAGSQRLRDVINKNITEEAIFKSC-KIAFE 397

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA---------------QAFSFKYSPR 370
               ++   F++G P ET DD +A  +L DKI                        + P+
Sbjct: 398 GGYSSVKLYFMLGLPTETLDDIKAIKELADKI-IDLYYNTEGRSKKAISISISLSTFIPK 456

Query: 371 LGTPGSNMLEQVDENVKAERLLCLQKKL 398
             TP      Q  E    ER   L   +
Sbjct: 457 PFTP-FEYEPQATEEQINERQKYLLDII 483


>gi|170289492|ref|YP_001739730.1| radical SAM domain-containing protein [Thermotoga sp. RQ2]
 gi|170176995|gb|ACB10047.1| Radical SAM domain protein [Thermotoga sp. RQ2]
          Length = 317

 Score = 53.8 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 33/197 (16%), Positives = 64/197 (32%), Gaps = 11/197 (5%)

Query: 185 GCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK 244
           GC + C FC      G     SL  +     +               +  + G      +
Sbjct: 12  GCKRRCVFCDQIKATGQTKVPSLDDIARIIEEYSRTSNEY------ELGFYGGTFTGLSE 65

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304
               + L  +     +  +R +T  P ++++  +K        +  + + VQS  D +L+
Sbjct: 66  EKMEEYLRFVKRFPVVKSIRVST-RPDEINERKLKILKKYG--VNVIEIGVQSFLDEVLE 122

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
              R +T+ E  +    I+       +S   +VG PG        +     + G      
Sbjct: 123 RSKRGYTSEEAERACKLIKKN--GFVLSVHLMVGLPGSDRRGEILSALRTVECGADMVRI 180

Query: 365 FKYSPRLGTPGSNMLEQ 381
                  GT    M+E+
Sbjct: 181 HPTLVFEGTELHRMMEE 197


>gi|25028656|ref|NP_738710.1| lipoyl synthase [Corynebacterium efficiens YS-314]
 gi|47117236|sp|Q8FNP4|LIPA_COREF RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|23493942|dbj|BAC18910.1| putative lipoic acid synthetase [Corynebacterium efficiens YS-314]
          Length = 348

 Score = 53.8 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 41/217 (18%), Positives = 77/217 (35%), Gaps = 20/217 (9%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC++   R   + R   + +  A  + +  +   T+ G      R    D    
Sbjct: 81  CSRRCDFCMINSARPEPLDR--GEPLRVAESVREMRLNYSTITGVT----RDDLPDEGAW 134

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
            +S+++  + E+     +           D L +       +  +    V     RI K 
Sbjct: 135 LYSEVVRKIHELNPNTGVENLVPDFSGKRDLLQEVFESRPEVFAHNLETV----PRIFKR 190

Query: 306 MNRRHTAYEYRQIIDRIRSVRP-DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
           +     A+ Y + +D IR  R   +   S+ I+G  GET ++    +  +   G      
Sbjct: 191 IRP---AFRYDRSLDVIRQARDFGLVTKSNLILGM-GETREEISEALRDLHSAGTDIITI 246

Query: 365 FKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQ 401
            +Y  R G     +   ++  VK E  L L  +  E 
Sbjct: 247 TQYL-RPG----PLFHPIERWVKPEEFLELSDEAYEI 278


>gi|319898767|ref|YP_004158860.1| lipoic acid synthetase [Bartonella clarridgeiae 73]
 gi|319402731|emb|CBI76278.1| lipoic acid synthetase [Bartonella clarridgeiae 73]
          Length = 317

 Score = 53.8 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 30/198 (15%), Positives = 72/198 (36%), Gaps = 19/198 (9%)

Query: 174 RGVTAFLTIQEGCDKFCTFCV----VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLG 229
           +   +F+ + E C + C FC     +P+           +V D   ++    +  + +  
Sbjct: 73  QRHASFMILGEICTRACAFCNVATGIPFAVDDN---EPERVADAVAQMA---LKHVVITS 126

Query: 230 QNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMP 289
            +    R    DG    F+ ++Y++ +   +  +   T   R+    L         +  
Sbjct: 127 VD----RDDLSDGGAQHFAKVIYAIRQKAPMTTIEVLTPDFRNKDGALEIVVAAKPDVFN 182

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +    +++   + LK +      +   +++ R++ + P I   S  +VG  GE  ++   
Sbjct: 183 H---NLETVPSKYLK-VRPGARYFHSIRLLQRVKELDPTIFTKSGIMVGL-GEERNEVLQ 237

Query: 350 TMDLVDKIGYAQAFSFKY 367
            MD +           +Y
Sbjct: 238 LMDDLRSADVDFMTIGQY 255


>gi|311032494|ref|ZP_07710584.1| coproporphyrinogen III oxidase [Bacillus sp. m3-13]
          Length = 495

 Score = 53.8 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 37/233 (15%), Positives = 78/233 (33%), Gaps = 29/233 (12%)

Query: 152 TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT-----RGIEIS-- 204
            D   +    +L +V   ++    V+ ++ I   C   C +C  P       +G   S  
Sbjct: 144 IDLMQQIVDRQLDVVPDLHDLGEEVSIYIGIPF-CPTKCAYCTFPAYAINGKQGKVDSFL 202

Query: 205 ----RSLSQVVDEARKLIDNGVCEITL-----LGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
                 +  +    +   + G+   T+        ++ A     L  +       +  + 
Sbjct: 203 GGLHHEIDAIGAWLK---EKGIKITTVYYGGGTPTSITAEEMDMLYEQMYASFPDMEKVR 259

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
           E+            P  ++   +      ++    + +  QS +   LK++ R HT  E 
Sbjct: 260 EVT------VEAGRPDTITPEKLDVLKKWNI--DRISINPQSYTQETLKAIGRHHTVEET 311

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
                  R +  +  I+ D I+G PGE   +F  T++  +K+          S
Sbjct: 312 IDKFHLAREMGMN-NINMDLIIGLPGEGVGEFAHTLEETEKLMPESLTVHTLS 363


>gi|292487598|ref|YP_003530470.1| lipoate synthesis protein lipA [Erwinia amylovora CFBP1430]
 gi|292898837|ref|YP_003538206.1| lipoic acid synthetase [Erwinia amylovora ATCC 49946]
 gi|291198685|emb|CBJ45794.1| lipoic acid synthetase [Erwinia amylovora ATCC 49946]
 gi|291553017|emb|CBA20062.1| lipoate synthesis protein LipA [Erwinia amylovora CFBP1430]
 gi|312171704|emb|CBX79962.1| lipoate synthesis protein LipA [Erwinia amylovora ATCC BAA-2158]
          Length = 321

 Score = 53.8 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 31/183 (16%), Positives = 67/183 (36%), Gaps = 12/183 (6%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V    G  ++   S+    A+ + D  +  + +   +    R    DG   
Sbjct: 94  CTRRCPFCDV--AHGRPMAPDASEPGKLAQTIADMALRYVVITSVD----RDDLRDGGAQ 147

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAH-GDLDVLMPYLHLPVQSGSDRILK 304
            F+D + ++ E    +++       R   D  ++        +  +    V     R+ +
Sbjct: 148 HFADCISAIREKNPSIKIETLVPDFRGRMDRALEILTATPPDVFNHNLENV----PRVYR 203

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
            +          ++++R +   P+I   S  +VG  GET+ +    M  + + G      
Sbjct: 204 QVRPGANYDWSLKLLERFKEAHPEIPTKSGLMVGL-GETNAEIVEVMRDLRRHGVTMLTL 262

Query: 365 FKY 367
            +Y
Sbjct: 263 GQY 265


>gi|298480727|ref|ZP_06998923.1| radical SAM domain protein [Bacteroides sp. D22]
 gi|298273161|gb|EFI14726.1| radical SAM domain protein [Bacteroides sp. D22]
          Length = 358

 Score = 53.8 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 30/216 (13%), Positives = 63/216 (29%), Gaps = 21/216 (9%)

Query: 169 GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI-EISR-SLSQVVDEARKLIDNGVCEIT 226
            +  K  +   + +   C   C +C +       E  R +L  ++D  R+    G     
Sbjct: 45  HFGNKIYIRGLIEVSNCCRNNCYYCGIRKGNPNIERYRLNLESILDCCRQGYKLGFRTFV 104

Query: 227 LLGQNVNAWRGKGLDGEKCTFSDLLYSLS---EIKGLVRLRYTTSHPRDMSDCLIKAHGD 283
           L G    A     ++             +    +    R  Y        +  L++    
Sbjct: 105 LQGGEDPALTDDRIEMTVARIRQNYPDCAITLSLGEKSRDAYERFFRAGANRYLLRHETY 164

Query: 284 LDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGET 343
            +     LH    SG               +  Q +  ++ +       +  +VG PG+T
Sbjct: 165 NESHYRQLHPAEMSG--------------KQRLQCLADLKDI--GYQTGTGIMVGSPGQT 208

Query: 344 DDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            +     +  ++K+         + P   TP +   
Sbjct: 209 VEHIIEDILFIEKLQPEMIGIGPFLPHHDTPFAQYP 244


>gi|167626131|ref|YP_001676425.1| coproporphyrinogen III oxidase [Shewanella halifaxensis HAW-EB4]
 gi|167356153|gb|ABZ78766.1| oxygen-independent coproporphyrinogen III oxidase [Shewanella
           halifaxensis HAW-EB4]
          Length = 446

 Score = 53.8 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 37/233 (15%), Positives = 76/233 (32%), Gaps = 15/233 (6%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C K C +C         I+R   +       L    V    L    +      G  G   
Sbjct: 51  CAKLCYYC----GCNKVITRHHHKADQYIEYLAAEIVKRAPLFKDYLVTQIHWG--GGTP 104

Query: 246 TFSDLLYSL---SEIKGLVRLRYTTSHPRDMSDCLIKA-HGDL--DVLMPYLHLPVQSGS 299
           TF      L   + +K    +     +  ++    I+    D   +     + + VQ  +
Sbjct: 105 TFLTPEQILTLSALVKANFNVAEVGEYSIEVDPREIELSMLDTLKEAGFNRISIGVQDFN 164

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
            ++  ++NR         ++ R + +   ++ + D I G P +T + F  TM  V  +  
Sbjct: 165 KKVQVAVNREQDEQFIFDLMARAKEL-GFVSTNIDLIYGLPHQTPETFAETMQRVLDLNP 223

Query: 360 AQAFSFKYSPRL-GTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVG 411
            +   F Y+           ++  D     ++L  L + +     +     +G
Sbjct: 224 DRLSVFNYAHLPSRFAAQRKIKDEDLASPQQKLDMLHQTIETLTGAGYQ-YIG 275


>gi|326794765|ref|YP_004312585.1| Lipoyl synthase [Marinomonas mediterranea MMB-1]
 gi|326545529|gb|ADZ90749.1| Lipoyl synthase [Marinomonas mediterranea MMB-1]
          Length = 319

 Score = 53.8 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 46/292 (15%), Positives = 91/292 (31%), Gaps = 22/292 (7%)

Query: 114 GEEILRRSPIVNVVVGPQTYYRLPELLE-RARFGKRVVDT-----DYSVEDKFERLSIVD 167
           G E + R P+   V+  +   R P+ L  R      +        ++ +    E  +  +
Sbjct: 16  GAEKMARIPV--KVIPTEEIPRKPDWLRVRIPASPEIARIKSTLREHKLASVCEEANCPN 73

Query: 168 GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITL 227
            G     G   F+ + + C + C FC V + R   +S    +  + A  + D  +  + +
Sbjct: 74  LGECFSNGTATFMIMGDICTRRCPFCDVAHGRPNALS--EDEPKELAAAIRDMRLKYVVI 131

Query: 228 LGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL 287
              +    R    DG    F + +     +   + +       R   D  +         
Sbjct: 132 TSVD----RDDLRDGGAQHFVNCIDETRALSPNIEIETLVPDFRGRMDVAVDILTQSPPD 187

Query: 288 MPYLHLPVQSGSDRIL-KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDD 346
           +          S   L + +           ++   +   PD+   S  +VG  GET ++
Sbjct: 188 V----FNHNLESIPRLYRQVRPGSDYQWSLDLLKNFKERCPDVPTKSGLMVGM-GETFEE 242

Query: 347 FRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKL 398
               M  +           +Y  +       M   V      ER   + K+L
Sbjct: 243 IVEVMKDLRAHNVEMLTIGQYL-QPSKHHFPMDRFVPPEE-FERYEQVAKEL 292


>gi|306820566|ref|ZP_07454197.1| radical SAM protein [Eubacterium yurii subsp. margaretiae ATCC
           43715]
 gi|304551383|gb|EFM39343.1| radical SAM protein [Eubacterium yurii subsp. margaretiae ATCC
           43715]
          Length = 311

 Score = 53.8 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 33/212 (15%), Positives = 64/212 (30%), Gaps = 18/212 (8%)

Query: 173 KRGVTAFLTIQEGCDKF------CTFCVVPYTRGIEISRSLS---QVVDEARKLIDNGVC 223
           +R     + +   C         CT+C         +S  +    Q++      I     
Sbjct: 16  QRVYKIPINLPVSCPNRKDGMGGCTYCSDIAVGYEMLSNDMGVSSQLLKNI-DYIGKKYK 74

Query: 224 EITLLG--QNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAH 281
               +   QN      K  D  +     +   + EI    R         D    ++   
Sbjct: 75  AEKFIAYFQNFTNTYLKLEDFARYISDAVRDDVVEIAVSTRP----DCVNDRYLDILDEI 130

Query: 282 GDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPG 341
            +   +   + L +QS +   LK +NR H+  EY   + RI+       +S+  I+  P 
Sbjct: 131 KEKTGINICIELGLQSVNYNTLKLINRGHSLAEYIDAMIRIKKY--GFDVSTHMILNLPY 188

Query: 342 ETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
           +  +D      ++  +               T
Sbjct: 189 DNLEDVIEAAKILSALKTDFVKMHSLYIAKNT 220


>gi|301063237|ref|ZP_07203786.1| radical SAM domain protein [delta proteobacterium NaphS2]
 gi|300442665|gb|EFK06881.1| radical SAM domain protein [delta proteobacterium NaphS2]
          Length = 588

 Score = 53.8 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 31/188 (16%), Positives = 72/188 (38%), Gaps = 15/188 (7%)

Query: 171 NRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQ 230
           + + G    + +  GC   C FC   Y        + S++       ++    ++ L+  
Sbjct: 249 DTEFGSKVLVEVGRGCGHACRFCAAGYVYRPPRIYTESELQKGIHSALER-CSQVGLVSP 307

Query: 231 NVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY 290
            V+         +     +L+  +    G      ++    +++  L++   +       
Sbjct: 308 AVS---------DTPGIEELIGVICHNGGKFS--VSSLRAENVTQGLLEYLRESGQ--KT 354

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
           + +  ++GS R+   +N+  T  +  + +  I +   D +I   F++G P ET  D    
Sbjct: 355 IAVAPEAGSQRLRNIINKHLTEAQILEAVRMI-AGISDFSIRLYFLMGLPTETHHDVDEI 413

Query: 351 MDLVDKIG 358
           ++LV KI 
Sbjct: 414 VELVKKIK 421


>gi|259090313|pdb|3IIZ|A Chain A, X-Ray Structure Of The Fefe-Hydrogenase Maturase Hyde From
           T. Maritima In Complex With S-Adenosyl-L-Methionine
          Length = 348

 Score = 53.8 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 40/249 (16%), Positives = 86/249 (34%), Gaps = 25/249 (10%)

Query: 138 ELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKR-------GVTAFLTIQEGCDKFC 190
           E LER  F + V+    S+ D+    ++       +R        + A +     C K C
Sbjct: 8   EKLERREFTREVLKEALSINDRGFNEALFKLADEIRRKYVGDEVHIRAIIEFSNVCRKNC 67

Query: 191 TFCVVPYTRGIEISR--SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS 248
            +C +            +  ++V+ AR  +  G   I L         G+         S
Sbjct: 68  LYCGLRRDNKNLKRYRMTPEEIVERARLAVQFGAKTIVLQS-------GEDPYXMPDVIS 120

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
           D++  + ++ G+         PR+  +   +A  D         L  ++ +  + + +  
Sbjct: 121 DIVKEIKKM-GVAVTLSLGEWPREYYEKWKEAGADR------YLLRHETANPVLHRKLRP 173

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
             +       +  ++ +       +  +VG PG+T DD    +  + +  +       + 
Sbjct: 174 DTSFENRLNXLLTLKEL--GYETGAGSMVGLPGQTIDDLVDDLLFLKEHDFDMVGIGPFI 231

Query: 369 PRLGTPGSN 377
           P   TP +N
Sbjct: 232 PHPDTPLAN 240


>gi|148239862|ref|YP_001225249.1| lipoyl synthase [Synechococcus sp. WH 7803]
 gi|147848401|emb|CAK23952.1| Lipoyl synthase [Synechococcus sp. WH 7803]
          Length = 303

 Score = 53.8 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 30/190 (15%), Positives = 63/190 (33%), Gaps = 13/190 (6%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V   +  E+   +      A  +I  G+  + L        R    D    
Sbjct: 73  CTRSCAFCQVDKGQAPELLNPMEA-ERVADAVITMGLRYVVLTAV----ARDDLEDHGAS 127

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
            F+  + ++     L+ +   T           +A       +  +        +  L++
Sbjct: 128 LFTRAIEAIRRRNPLIAIEVLTPDFWGGQPDQREAIQVQRQRLQTVLDASPVCFNHNLET 187

Query: 306 M-------NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           +        R  T      ++   R + P+I   S  ++G  GET ++   TM+ +  + 
Sbjct: 188 VERLQGEVRRGATYARSLGLLAAARELAPEIPTKSGLMLGL-GETQEEVIQTMEHLRAVD 246

Query: 359 YAQAFSFKYS 368
             +    +Y 
Sbjct: 247 CQRLTIGQYM 256


>gi|89092039|ref|ZP_01164994.1| lipoyl synthase [Oceanospirillum sp. MED92]
 gi|89083774|gb|EAR62991.1| lipoyl synthase [Oceanospirillum sp. MED92]
          Length = 327

 Score = 53.8 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 46/266 (17%), Positives = 93/266 (34%), Gaps = 18/266 (6%)

Query: 109 VAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG-----KRVVDT--DYSVEDKFE 161
             +  G + + R PI  +    +   R P+ L R R G     KR+ D    + +    E
Sbjct: 17  GVKLRGADKVDRIPIKVIPTEKEDMPRKPDWL-RVRMGSNAKVKRIKDKLRKHKLASVCE 75

Query: 162 RLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNG 221
             S  + G     G   F+ + + C + C FC V    G   +   ++  + A  + D  
Sbjct: 76  EASCPNLGECFSHGTATFMIMGDICTRRCPFCDV--AHGRPNALDENEPKEMADAIADME 133

Query: 222 VCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAH 281
           +  + +   +    R    DG    F++ +    +    + +       R   D  +   
Sbjct: 134 LRYVVVTSVD----RDDLRDGGAQHFANCITETRKQVPTIEMEILVPDFRGRMDIAVDIL 189

Query: 282 GDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPG 341
            +     P +         R+ K++          Q++ + ++  PD+   S  +VG  G
Sbjct: 190 TETP---PDVFNHNMETVPRLYKAVRPGSDYEWSLQLLKKYKAKNPDVRTKSGLMVGI-G 245

Query: 342 ETDDDFRATMDLVDKIGYAQAFSFKY 367
           ET+++    M  +           +Y
Sbjct: 246 ETNEEIIQVMKDLRAHDVDMLTIGQY 271


>gi|257469865|ref|ZP_05633957.1| oxygen-independent coproporphyrinogen III oxidase [Fusobacterium
           ulcerans ATCC 49185]
 gi|317064094|ref|ZP_07928579.1| oxygen-independent coproporphyrinogen III oxidase [Fusobacterium
           ulcerans ATCC 49185]
 gi|313689770|gb|EFS26605.1| oxygen-independent coproporphyrinogen III oxidase [Fusobacterium
           ulcerans ATCC 49185]
          Length = 538

 Score = 53.8 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 42/236 (17%), Positives = 92/236 (38%), Gaps = 32/236 (13%)

Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDEARKL---IDNGVCEITLLG--QNVNAWRGKGLDG 242
           K C FC    +     SR L  + ++  +    I+N      ++   QN     G     
Sbjct: 43  KGCIFCSESGSGDFAGSRRL-SITEQIEEQLKLIENKFPSGKVIAYFQNFTNTYGDVEYL 101

Query: 243 EKCTFSDLLY-SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
            K  +  L +  +  +    R      +  ++ + +       +    ++ L +Q+ +++
Sbjct: 102 RKIYYEALSHPRVIGLAIATRPDCLGDNIIELLNEI------NNKYFLWIELGLQTINEK 155

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
           + K +NR++    Y +  ++++    +I   +  IVG PGE +DD   T           
Sbjct: 156 VAKIINRQYPLKTYEEAAEKLKKY--NIKFVTHIIVGLPGEEEDDPLNT----------- 202

Query: 362 AFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVL 417
                YS + GT G  +   +   +K   L    K+  E ++   +  V +++++L
Sbjct: 203 ---AVYSEKCGTWGIKI--HLLHIIKNTELEKFYKE-NELKIQKKEEYVKKVVKIL 252


>gi|212637756|ref|YP_002314281.1| coproporphyrinogen III oxidase [Shewanella piezotolerans WP3]
 gi|212559240|gb|ACJ31694.1| Oxygen-independent coproporphyrinogen III oxidase [Shewanella
           piezotolerans WP3]
          Length = 458

 Score = 53.8 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 37/236 (15%), Positives = 78/236 (33%), Gaps = 21/236 (8%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C K C +C         I+R   +       L    V    L    +      G  G   
Sbjct: 63  CAKLCYYC----GCNKVITRHQHKADQYIEYLAAEIVKRAPLFKDYLVTQIHWG--GGTP 116

Query: 246 TFSDLLYSLSEIKGLVRLRYTTS---------HPRDMSDCLIKAHGDLDVLMPYLHLPVQ 296
           TF      +  +  LV+  +  +          PR++   ++    +       + + VQ
Sbjct: 117 TF-LTPEQILTLSALVKANFNVAEVGEYSIEVDPREIELSMLDTLKEAG--FNRISIGVQ 173

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
             + ++  ++NR         ++ R + +   ++ + D I G P +T + F  TM  V  
Sbjct: 174 DFNKKVQIAVNREQDEQFIFDLMARAKEL-GFVSTNIDLIYGLPHQTPETFAETMQRVLD 232

Query: 357 IGYAQAFSFKYSPRL-GTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVG 411
           +   +   F Y+           ++  D     ++L  L + +     +     +G
Sbjct: 233 LDPDRLSVFNYAHLPSRFAAQRKIKDEDLASPQQKLDMLHQTIETLTGAGYQ-YIG 287


>gi|197105200|ref|YP_002130577.1| lipoic acid synthase [Phenylobacterium zucineum HLK1]
 gi|238690144|sp|B4RBV1|LIPA_PHEZH RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|196478620|gb|ACG78148.1| lipoic acid synthase [Phenylobacterium zucineum HLK1]
          Length = 319

 Score = 53.8 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 28/196 (14%), Positives = 62/196 (31%), Gaps = 14/196 (7%)

Query: 174 RGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVN 233
           +    F+ + E C + C FC V    G  ++    +           G+  + +   +  
Sbjct: 72  KSHATFMIMGEVCTRACAFCNV--ATGKPLALDPDEPARVGEATAKMGLKHVVVTSVD-- 127

Query: 234 AWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIK-AHGDLDVLMPYLH 292
             R    DG    F + + ++        +   T          ++        +  +  
Sbjct: 128 --RDDLADGGAWHFVETIRAIRAASPATTIEILTPDFARKPVAALESVIDARPDVFNHNL 185

Query: 293 LPVQSGSDRILKSMNRRHTAYEY-RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351
                 +   L    R    Y +  ++++R++   P     S  +VG  GE+ ++    M
Sbjct: 186 -----ETVPRLYLSIRPGARYYHSLRLLERVKERDPTQFTKSGIMVGL-GESKEEVMQVM 239

Query: 352 DLVDKIGYAQAFSFKY 367
           D +   G       +Y
Sbjct: 240 DDMRSAGVDFITIGQY 255


>gi|78223519|ref|YP_385266.1| radical SAM family protein [Geobacter metallireducens GS-15]
 gi|78194774|gb|ABB32541.1| Radical SAM [Geobacter metallireducens GS-15]
          Length = 346

 Score = 53.8 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 37/213 (17%), Positives = 68/213 (31%), Gaps = 19/213 (8%)

Query: 173 KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS----LSQVVDEARKLIDNGVCE---I 225
           K  +  F    +GC   C FC      G    R       +++    +   +G      +
Sbjct: 2   KPLIVPFFISHQGCPHQCVFCDQERISGQ---RPGLPEPEEMIATIDRHAASGRGRPLEV 58

Query: 226 TLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLD 285
              G    +      +         L  L     + R+R +T  P  +     +      
Sbjct: 59  AFYGGTFTSLPRSDQE----RLLAPLQPLMATGSVARVRLST-RPDAVDGETARFLAS-- 111

Query: 286 VLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDD 345
             +  + L VQS  D +L +  R H A    Q    +      I + +  + G PG+T D
Sbjct: 112 RGVATVELGVQSMDDAVLTAAGRGHGAAHVEQAFASLCGA--GIDVGAQLMPGLPGDTAD 169

Query: 346 DFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
               +++ V  +  A    +      GT  + +
Sbjct: 170 STLESLERVLALSPAFMRIYPTLVVEGTRLAEL 202


>gi|323702396|ref|ZP_08114061.1| oxygen-independent coproporphyrinogen III oxidase [Desulfotomaculum
           nigrificans DSM 574]
 gi|323532702|gb|EGB22576.1| oxygen-independent coproporphyrinogen III oxidase [Desulfotomaculum
           nigrificans DSM 574]
          Length = 378

 Score = 53.8 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 36/199 (18%), Positives = 66/199 (33%), Gaps = 14/199 (7%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C +C        +      QV    + L    +    LL           + G   
Sbjct: 12  CIRKCLYCDFTSYLLKQ-----EQVALYIKALKGEIILYGQLLAPEHKTIASIFVGGGTP 66

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCL------IKAHGDLDVL-MPYLHLPVQSG 298
           T   +   L++I   V   +T     +++         + +  +L  +    L L VQS 
Sbjct: 67  TC-LMSRQLADILDQVARYFTIQPGAEITTEANPGTVSLNSLKELKRVGFNRLSLGVQST 125

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
              +L  + R H   + RQ +D  R    +  ++ D I G P +T   +R ++  V    
Sbjct: 126 HQELLNLIGRIHNLDQARQAVDFARQAGFN-NLNLDLIFGLPRQTAAQWRQSLSQVLAWQ 184

Query: 359 YAQAFSFKYSPRLGTPGSN 377
                 +       TP + 
Sbjct: 185 PEHLSCYGLQLEESTPLAR 203


>gi|312375110|gb|EFR22540.1| hypothetical protein AND_14544 [Anopheles darlingi]
          Length = 408

 Score = 53.8 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 28/183 (15%), Positives = 62/183 (33%), Gaps = 8/183 (4%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V   R        ++ V+ A  +   G+  I L   +    R    DG   
Sbjct: 151 CTRGCRFCSVKTARAPP-PLDPAEPVNTATAIASWGLDYIVLTSVD----RDDLPDGGSK 205

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
             +  +  + +    + L    +         I+      + +   ++         ++ 
Sbjct: 206 HIAATIAEIKQRYWKLELANEAAPDFRGDTECIETVALSGLDVYAHNIETVEALTPFVRD 265

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
              R+      + +  ++   P++   S  ++G  GETD+    TM+ +  +G       
Sbjct: 266 RRARYRQS--LECLAAVKRFNPNLITKSSIMLGL-GETDEQVEQTMNDLRSVGVDCLTLG 322

Query: 366 KYS 368
           +Y 
Sbjct: 323 QYM 325


>gi|310829767|ref|YP_003962124.1| Radical SAM domain protein [Eubacterium limosum KIST612]
 gi|308741501|gb|ADO39161.1| Radical SAM domain protein [Eubacterium limosum KIST612]
          Length = 443

 Score = 53.8 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 50/266 (18%), Positives = 77/266 (28%), Gaps = 34/266 (12%)

Query: 113 EGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIV------ 166
             E ++R  P +++ V  +    +  LL+      ++    Y    + + +  V      
Sbjct: 116 FPERLMREFPEIDLGVAGEAEEIIVPLLDSIDHPPKLPGLVYRENGEVKMVPPVGKFDMG 175

Query: 167 -----------DGGYNRKRGVTAFLTIQ--EGCDKFCTFCVVPYTRG-IEISRSLSQVVD 212
                         Y R       + ++   GC   C +C  P   G     R  + VVD
Sbjct: 176 SYTMPNRELLDPREYLRVNKYVESVGVETKRGCCYNCGYCSYPLLSGCGMRCREPASVVD 235

Query: 213 EARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPR 271
           E   L    GV  I L    VN       D  K      L       G  R    T    
Sbjct: 236 EIEFLHKEYGVSRIHLTDSIVNFPVNHLDDICKELIRRRLDI--HWSGFFRENLLTPENA 293

Query: 272 DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAI 331
            +           D       L     S   L  +++  T  E       +  V   I  
Sbjct: 294 PLY---------RDSGCECFSLSPDGLSQTALDILDKHLTVDEILHTAKVLSDV--GITT 342

Query: 332 SSDFIVGFPGETDDDFRATMDLVDKI 357
              F+V  PG+T         L+D+I
Sbjct: 343 VYHFLVNTPGDTWKTVDEGKALIDQI 368


>gi|126331817|ref|XP_001374049.1| PREDICTED: similar to lipoic acid synthetase [Monodelphis
           domestica]
          Length = 372

 Score = 53.8 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 32/185 (17%), Positives = 66/185 (35%), Gaps = 13/185 (7%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLS--QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
           C + C FC V   R       L   +  + A+ + + G+  + L   +    R    DG 
Sbjct: 137 CTRGCRFCSVKTARKP---PPLDSNEPYNTAKAIAEWGLDYVVLTSVD----RDDLPDGG 189

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
              F+  +  L E    + +   T    D    L          +      V++  +   
Sbjct: 190 AEHFAKTVSYLKERNSNILVECLTP---DFRGDLKAVEKIARSGLDVYAHNVETVPELQR 246

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           +  + R    +  Q++   + V+P++   +  ++G  GETD+   +TM  + +       
Sbjct: 247 QVRDPRANFDQSVQVLKHAKKVQPNVISKTSIMLGL-GETDEQVYSTMKALREADVDCLT 305

Query: 364 SFKYS 368
             +Y 
Sbjct: 306 LGQYM 310


>gi|146277024|ref|YP_001167183.1| coproporphyrinogen III oxidase [Rhodobacter sphaeroides ATCC 17025]
 gi|160359134|sp|P95651|HEMN_RHOS5 RecName: Full=Oxygen-independent coproporphyrinogen-III oxidase;
           Short=Coprogen oxidase; Short=Coproporphyrinogenase
 gi|145555265|gb|ABP69878.1| oxygen-independent coproporphyrinogen III oxidase [Rhodobacter
           sphaeroides ATCC 17025]
          Length = 452

 Score = 53.8 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 34/215 (15%), Positives = 75/215 (34%), Gaps = 30/215 (13%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVV-------DEARKLIDNGVCEITLLGQNVNAWRGK 238
           C++ C FC    T+G +    +   V       +  +K +  GV    L           
Sbjct: 60  CERLCWFCA-CRTQGTQTLAPVEAYVGTLLQELELVKKHLPAGVKAGRL----------- 107

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL-------MPYL 291
              G           + ++   ++     +   + S  +     D   +       M   
Sbjct: 108 -HWGGGTPTILSPELIHKLAQAIKAVIPFAEDYEFSVEIDPMMVDEPKIRALSEEGMNRA 166

Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351
            + +Q  +D +  ++ R       R  ++ +R      ++++D + G P +  +   AT+
Sbjct: 167 SIGIQDFTDIVQSAIGREQPFENTRACVETLRRYGVH-SLNTDLVYGLPHQNRESLAATI 225

Query: 352 DLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           D V ++G  +   F Y+       +   + +DENV
Sbjct: 226 DKVLQLGPDRVAIFGYAHVP--WMAKRQKLIDENV 258


>gi|327539421|gb|EGF26037.1| oxygen-independent coproporphyrinogen III oxidase [Rhodopirellula
           baltica WH47]
          Length = 373

 Score = 53.8 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 30/195 (15%), Positives = 62/195 (31%), Gaps = 17/195 (8%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C   C +C      G        ++ D+    ++  +  I      +         G   
Sbjct: 6   CRHRCGYCNFSVIAGR------DELQDQYLDAVERELKGIDNSSHELPLRTIFLGGGTPT 59

Query: 246 TFS-----DLLYSLSEIKGLVRLRYTTSHPR--DMSDCLIKAHGDLDVLMPYLHLPVQSG 298
             S      L  ++S    +      T+     D+S   + A   +   +  + L VQS 
Sbjct: 60  RLSAARLQRLHRAISNAFPIADDAEITAEANPEDISPECLDALQAIG--VNRISLGVQSF 117

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
               L+ + R H        I+       +++I  D I G P E+   ++  + +     
Sbjct: 118 DAEKLRCLERGHDESIALSAIESAHRRVGNVSI--DLIFGAPNESLATWQNDLSIAAASS 175

Query: 359 YAQAFSFKYSPRLGT 373
            +   ++  +   GT
Sbjct: 176 ISHVSTYALTFEKGT 190


>gi|326629544|gb|EGE35887.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
          Length = 485

 Score = 53.8 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 40/248 (16%), Positives = 87/248 (35%), Gaps = 20/248 (8%)

Query: 173 KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEI--TLLGQ 230
           +R ++ ++ I   C K C FC        +  +   Q +D   + I +         + Q
Sbjct: 78  ERPLSLYVHIPF-CHKLCYFCGCNKIVTRQQHK-ADQYLDALEQEIRHRAPLFADRHVSQ 135

Query: 231 NVNAWRGKGLDGEKCTFSDLLYSLSE-----IKGLVRLRYTTSHPRDMSDCLIKAHGDLD 285
            ++   G      K   S L+  L E         + +      PR++   ++       
Sbjct: 136 -LHWGGGTPTYLNKTQISRLMTLLRENFHFNTDAEISIEV---DPREIELDVLDHLRAEG 191

Query: 286 VLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS-DFIVGFPGETD 344
                L + VQ  +  + + +NR         +++  R +      ++ D I G P +T 
Sbjct: 192 --FNRLSMGVQDFNKEVQRLVNREQDEEFIFALLNHARDI--GFTSTNIDLIYGLPKQTP 247

Query: 345 DDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQV 403
           + F  T+  V ++   +   F Y+       +   ++  D     ++L  LQ+ +     
Sbjct: 248 ESFAFTLKRVTELNPDRLSVFNYAHLPTLFAAQRKIKDADLPSAQQKLDILQETIVSLTQ 307

Query: 404 SFNDACVG 411
           +     +G
Sbjct: 308 AGYQ-FIG 314


>gi|322807905|emb|CBZ05480.1| biotin synthase and related enzymes [Clostridium botulinum H04402
           065]
          Length = 348

 Score = 53.8 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 28/226 (12%), Positives = 72/226 (31%), Gaps = 16/226 (7%)

Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP-YTRGIEISR-SL 207
           +D +      ++        YN K  +   +     C   C +C +       E  R S 
Sbjct: 26  IDKENKKYLIYKAHETSLKHYNSKVYLRGLIEFTNYCKNACLYCGISCNNNNAERYRLSE 85

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
            ++++  +K    G     L G     +    +     +   L  + +    +    Y  
Sbjct: 86  EEILNCCKKGYSLGYRTFVLQGGEDPYYTDNKIIDIIKSIKKLFPNCAVTLSIGEKSY-- 143

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
               +       A  D         L  ++ S  + + ++   +    R  +  ++ +  
Sbjct: 144 ----ETYKKFYDAGADR------YLLRHETASKNLYEKLHPDMSFENRRSCLKNLKKI-- 191

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
              + + F++G P +T++D+   +  + ++         + P   T
Sbjct: 192 GYQVGAGFMIGLPNQTNEDYVNDLIFLKELKPHMVGIGPFIPHKDT 237


>gi|319892815|ref|YP_004149690.1| Predicted Fe-S oxidoreductase [Staphylococcus pseudintermedius
           HKU10-03]
 gi|317162511|gb|ADV06054.1| Predicted Fe-S oxidoreductase [Staphylococcus pseudintermedius
           HKU10-03]
 gi|323464153|gb|ADX76306.1| radical SAM protein [Staphylococcus pseudintermedius ED99]
          Length = 317

 Score = 53.8 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 37/202 (18%), Positives = 68/202 (33%), Gaps = 19/202 (9%)

Query: 188 KFCTFCVVPYT------RGIEISRSLSQVVDEARKLIDNGVCEITLLG-QNVNAWRGKGL 240
             CTFC    +      R   I     ++ ++  +    G          N +A      
Sbjct: 50  GGCTFCSAAGSGDFAGNRADAIEVQFKEIKNKMHEKWHEGQYIAYFQAFTNTHAPV---- 105

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL-DVLMPYLHLPVQSGS 299
                   +   +  +  G+V L   T  P  + D ++    +L +    ++ L +Q+  
Sbjct: 106 ----AVLREKFEAALKEPGVVGLSIGT-RPDCLPDDVVDYLAELNERTYLWVELGLQTIH 160

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
                 +NR H    Y + + ++R  R +I + S  I G PGE  D    T   V ++  
Sbjct: 161 QETSDLINRAHDMDCYYEGVAKLR--RHNIKVCSHIINGLPGEDYDMMIETAKAVAQMDV 218

Query: 360 AQAFSFKYSPRLGTPGSNMLEQ 381
                       GTP     ++
Sbjct: 219 QGIKIHLLHLLKGTPMMKQYDK 240


>gi|229839869|ref|ZP_04460028.1| coproporphyrinogen III oxidase, SAM and NAD(P)H dependent,
           oxygen-independent [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229696235|gb|EEO86282.1| coproporphyrinogen III oxidase, SAM and NAD(P)H dependent,
           oxygen-independent [Yersinia pestis biovar Orientalis
           str. PEXU2]
          Length = 408

 Score = 53.8 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 46/111 (41%), Gaps = 3/111 (2%)

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
           +L+ +NR         +I R +++  + + + D I G P +T + F  T+  V ++   +
Sbjct: 129 VLRLVNREQDEDFIFALIARAKALGFN-STNIDLIYGLPKQTPESFAFTLKRVAELNPDR 187

Query: 362 AFSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVG 411
              F Y+       +   ++  D     +RL  LQ  +R    S     +G
Sbjct: 188 LSVFNYAHLPSLFAAQRKIKDADLPTAEQRLDILQHTIRFLTESGYQ-FIG 237


>gi|170724423|ref|YP_001758449.1| coproporphyrinogen III oxidase [Shewanella woodyi ATCC 51908]
 gi|169809770|gb|ACA84354.1| oxygen-independent coproporphyrinogen III oxidase [Shewanella
           woodyi ATCC 51908]
          Length = 446

 Score = 53.8 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 35/234 (14%), Positives = 77/234 (32%), Gaps = 17/234 (7%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C K C +C         I+R   +       L    V    L     N    +   G   
Sbjct: 51  CAKLCYYC----GCNKVITRHQHKADQYIEYLAAEIVKRAPLFK---NYLVTQIHWGGGT 103

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL-------MPYLHLPVQSG 298
                   + ++  L++  +  +   + S  +     +L +L          + + VQ  
Sbjct: 104 PTFLSPDQILKLSSLIKEHFNVADKGEYSIEVDPREIELSMLDTLKEAGFNRISIGVQDF 163

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           + ++  ++NR         ++ R + +   ++ + D I G P +T + F  TM  V  + 
Sbjct: 164 NKKVQIAVNREQDEQFIFDLMARAKEL-GFVSTNIDLIYGLPHQTPETFAETMQRVLDLD 222

Query: 359 YAQAFSFKYSPRL-GTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVG 411
             +   F Y+           ++  D     ++L  L + +     +     +G
Sbjct: 223 PDRLSVFNYAHLPARFAAQRKIKDEDLASPQQKLDMLHQTIETLTGAGYQ-YIG 275


>gi|166363560|ref|YP_001655833.1| lipoyl synthase [Microcystis aeruginosa NIES-843]
 gi|166085933|dbj|BAG00641.1| lipoic acid synthetase [Microcystis aeruginosa NIES-843]
          Length = 291

 Score = 53.8 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 69/220 (31%), Gaps = 10/220 (4%)

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
           + V  D  +    E  S  + G     G   FL +   C + C +C +            
Sbjct: 22  KEVLRDLGLNTVCEEASCPNIGECFHAGTATFLIMGPACTRACPYCDI-DFEKKPQPLDP 80

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
           ++ +  A  +    +  + +   N    R    DG    F   +  +  I     +    
Sbjct: 81  TEPLRLAAAVQRLDLNHVVITSVN----RDDLADGGASQFVRCIEEIRRISPKTTIEVLI 136

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
                    L         ++ +    V     R+ + +  +       +++ R R++ P
Sbjct: 137 PDLCGNWQALALILAAKPEVLNHNTETV----PRLYRRVRPQGDYQRSLELLQRARAIVP 192

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
                S  +VG  GETD++ R  M  +  +        +Y
Sbjct: 193 ATYTKSGIMVGL-GETDEEVRQVMRDLRAVDCDILTIGQY 231


>gi|298530513|ref|ZP_07017915.1| Protein of unknown function DUF2344 [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298509887|gb|EFI33791.1| Protein of unknown function DUF2344 [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 845

 Score = 53.8 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 38/231 (16%), Positives = 88/231 (38%), Gaps = 22/231 (9%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKL-IDNGVCEITLLGQNVNAWRGK 238
           + I  GC + C FC           RS+S+++++ ++  +  G+ E++ L  +       
Sbjct: 250 IEIARGCTRGCRFCQAGSIYRPVRERSISRILEDVQQGLLATGLEELSFLSLSSG----- 304

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
                +  F+       + +  V +   +     +++ L++    +        L  ++G
Sbjct: 305 DFSALEELFTRSFARCQQQQ--VAMALPSLRVGSVNERLMQLMSRIRR--TQATLAPEAG 360

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDD---FRATMDLVD 355
           + R+ + +N+  T  +  +    +  +     +   F+VG P E DDD    R     V 
Sbjct: 361 TSRLRQVINKGITEEQLLKHTGHLFDLGWK-GVKLYFMVGLPTEADDDLKGIRDLCQKVL 419

Query: 356 KIGYAQ-------AFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLR 399
           + G ++       A    + P+  TP      Q   +   E++  L+   +
Sbjct: 420 ETGRSRKIKPQVTASVAPFVPKPHTP-FQWERQAGLSEIREKIFRLKDLFK 469


>gi|167536268|ref|XP_001749806.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163771733|gb|EDQ85395.1| predicted protein [Monosiga brevicollis MX1]
          Length = 830

 Score = 53.8 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 29/216 (13%), Positives = 79/216 (36%), Gaps = 10/216 (4%)

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQ-EGCDKFCTFCVVPYTRGIEISRSLSQVVD 212
           ++V ++    +I +     +   TA + +  + C + C FC +  T        + +   
Sbjct: 94  HTVCEEARCPNIGECWGGAEGTATATIMLMGDECTRGCRFCSIK-TNKAPAPLDVDEPAH 152

Query: 213 EARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
            A  +   G+  + L   +    R    DG    F+  +  L + K  + +   T     
Sbjct: 153 TAAAVAAWGLDYVVLTSVD----RDDLPDGGSNHFASTVIELKKRKPEILVECLTPDFSG 208

Query: 273 MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAIS 332
           + + + +       +  +    V+S +   ++    ++      ++++  +  +P +   
Sbjct: 209 VYEDIARVAVSGLDVFAHNMETVESLTP-SVRDRRAKYRQS--LRVLEMAKEAQPGLITK 265

Query: 333 SDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
           +  ++G  GE D++   T+  +   G       +Y 
Sbjct: 266 TSLMLGL-GERDEEIEQTLADLRLAGVDCVTFGQYM 300


>gi|327439115|dbj|BAK15480.1| lipoate synthase [Solibacillus silvestris StLB046]
          Length = 303

 Score = 53.8 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 39/263 (14%), Positives = 89/263 (33%), Gaps = 20/263 (7%)

Query: 105 VAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLS 164
           +  C      EE LR+   + + +     Y+  + L R        +  ++V ++    +
Sbjct: 1   MTSCKPTNPREEHLRKPEWLKIKLNTNDEYKALKKLMRD-------NNLHTVCEEARCPN 53

Query: 165 IVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCE 224
           I +    R+      + +   C + C FC V      E+   L++    A  +    +  
Sbjct: 54  IHECWGERR--TATMMILGSVCTRACRFCAVKTGLPNEL--DLAEPERVADSVALMNLKH 109

Query: 225 ITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL 284
           + +        R    DG     ++ + ++     L  +    S      + L       
Sbjct: 110 VVIT----MVARDDLKDGGAEVLAETVRAIRRKSPLTSVEVLPSDLSGREESLRILMDAK 165

Query: 285 DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETD 344
             ++ +    V+S +      +  + T     + + R + ++P I   S  ++G  GET 
Sbjct: 166 PDILNHNIETVRSLTP----RVRAKATYDRSLEFLRRAKEMQPTIPTKSSLMIGL-GETL 220

Query: 345 DDFRATMDLVDKIGYAQAFSFKY 367
           ++    MD +           +Y
Sbjct: 221 EEIYEVMDDLRANNVDIMTIGQY 243


>gi|323493188|ref|ZP_08098318.1| coproporphyrinogen III oxidase [Vibrio brasiliensis LMG 20546]
 gi|323312535|gb|EGA65669.1| coproporphyrinogen III oxidase [Vibrio brasiliensis LMG 20546]
          Length = 462

 Score = 53.8 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 41/253 (16%), Positives = 89/253 (35%), Gaps = 30/253 (11%)

Query: 173 KRGVTAFLTIQEGCDKFCTFC-----VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITL 227
           +R ++ ++ I   C K C +C     +  +    +    + ++    R  +  G     L
Sbjct: 55  ERPLSLYIHIPF-CHKLCYYCGCNKVITRHAHKADEYLDVLELEIRTRAALLQGRKVTQL 113

Query: 228 LGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL 287
                         G   TF      +S +  ++R  +      ++S  +     +LD+L
Sbjct: 114 -----------HFGGGTPTF-LTKAQISRLMAILRGEFFFEGDAEISIEVDPREIELDML 161

Query: 288 -------MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS-DFIVGF 339
                     L + VQ  +  + K +NR         +++R + +      ++ D I G 
Sbjct: 162 DHLRGEGFNRLSIGVQDFNKEVQKLVNREQDEEFIFAMVERAKQL--GFRSTNLDLIYGL 219

Query: 340 PGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKL 398
           P +T   F  T+  V ++   +   F Y+       +   ++  D  V  E++  LQ  +
Sbjct: 220 PKQTKQSFAETLKQVLEMKPGRLSVFNYAHMPQLFAAQRKIKDEDLPVAEEKMAILQDTI 279

Query: 399 REQQVSFNDACVG 411
                +     +G
Sbjct: 280 ATLTNAEYQ-FIG 291


>gi|313902177|ref|ZP_07835586.1| lipoic acid synthetase [Thermaerobacter subterraneus DSM 13965]
 gi|313467577|gb|EFR63082.1| lipoic acid synthetase [Thermaerobacter subterraneus DSM 13965]
          Length = 440

 Score = 53.8 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 39/249 (15%), Positives = 79/249 (31%), Gaps = 17/249 (6%)

Query: 125 NVVVGPQTYYRLPELLE-RARFGK-----RVVDTDYSVEDKFERLSIVDGGYNRKRGVTA 178
           + + G     R P+ L+ R   G      + +    S+    E     +     +     
Sbjct: 97  HALAGGHAGRRHPDWLKVRLAQGPNYNRLKRLLRGMSLHTVCEEARCPNIYECFENLTAT 156

Query: 179 FLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK 238
           F+ +   C + C FC V   R  E+    ++    A  +   G+  + +        R  
Sbjct: 157 FMILGNICTRACRFCAVTTGRPTEL--DWAEPERVADAVQRLGLQHVVVTSV----ARDD 210

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
             DG    F++ + ++        +           D L         ++ +    V+  
Sbjct: 211 LRDGGAAVFAETIRAIRRRCPDTAVEVLIPDFNGDWDALQVVLDAEPDILNHNVETVRRL 270

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           SDR+      R+       ++   +   P I   S  ++G  GET D+   T+  +    
Sbjct: 271 SDRV--RSRARYDRS--LALLAEAKRRAPHIKTKSGLMLGL-GETWDEILQTLRDLRAHQ 325

Query: 359 YAQAFSFKY 367
                  +Y
Sbjct: 326 VDIVTIGQY 334


>gi|269127309|ref|YP_003300679.1| lipoic acid synthetase [Thermomonospora curvata DSM 43183]
 gi|268312267|gb|ACY98641.1| lipoic acid synthetase [Thermomonospora curvata DSM 43183]
          Length = 305

 Score = 53.8 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 35/219 (15%), Positives = 68/219 (31%), Gaps = 24/219 (10%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC +    G   +    +    A  +   G+   T+ G      R    D    
Sbjct: 79  CTRRCDFCQI--DTGKPAAYDPDEPRRVAESVAAMGLRYATVTGV----ARDDLPDQGAW 132

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
            +++ +  +        +         +   L +       ++ +    V     RI K 
Sbjct: 133 LYAETVRQIHRAVPGCGVELLIPDFNAVPSLLAQVFEARPEVLAHNVETV----PRIFKR 188

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           +          ++I R R     +   S+ I+G  GET  +    +  +   G       
Sbjct: 189 IRPAFRYERSLEVITRAREA--GLVTKSNLILGL-GETRQEVSQALRDLHAAGCELVTIT 245

Query: 366 KY---SPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQ 401
           +Y   SPR           V+  VK E  + L+ +  + 
Sbjct: 246 QYLRPSPRHH--------PVERWVKPEEFIELKAEAEQI 276


>gi|200388327|ref|ZP_03214939.1| oxygen-independent coproporphyrinogen III oxidase [Salmonella
           enterica subsp. enterica serovar Virchow str. SL491]
 gi|199605425|gb|EDZ03970.1| oxygen-independent coproporphyrinogen III oxidase [Salmonella
           enterica subsp. enterica serovar Virchow str. SL491]
          Length = 457

 Score = 53.8 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 41/248 (16%), Positives = 88/248 (35%), Gaps = 20/248 (8%)

Query: 173 KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNV 232
           +R ++ ++ I   C K C FC        +  +   Q +D   + I +            
Sbjct: 50  ERPLSLYVHIPF-CHKLCYFCGCNKIVTRQQHK-ADQYLDALEQEIRHRAPLF------A 101

Query: 233 NAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL----- 287
           N    +   G           +S +  L+R  +  +   ++S  +     +LDVL     
Sbjct: 102 NRHVSQLHWGGGTPTYLNKAQISRLMTLLRENFHFNTDAEISIEVDPREIELDVLDHLRA 161

Query: 288 --MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS-DFIVGFPGETD 344
                L + VQ  +  + + +NR         +++  R +      ++ D I G P +T 
Sbjct: 162 EGFNRLSMGVQDFNKEVQRLVNREQDEEFIFALLNHARDI--GFTSTNIDLIYGLPKQTP 219

Query: 345 DDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQV 403
           + F  T+  V ++   +   F Y+       +   ++  D     ++L  LQ+ +     
Sbjct: 220 ESFAFTLKRVTELNPDRLSVFNYAHLPTLFAAQRKIKDADLPSAQQKLDILQETIVSLTQ 279

Query: 404 SFNDACVG 411
           +     +G
Sbjct: 280 AGYQ-FIG 286


>gi|15679455|ref|NP_276572.1| hypothetical protein MTH1458 [Methanothermobacter
           thermautotrophicus str. Delta H]
 gi|2622572|gb|AAB85933.1| unknown [Methanothermobacter thermautotrophicus str. Delta H]
          Length = 392

 Score = 53.8 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 39/246 (15%), Positives = 84/246 (34%), Gaps = 23/246 (9%)

Query: 153 DYSVEDKFERLSIVDGGYNRKRGVTAF---LTIQEGCDKFCTFCV-VPYTRGIEISRSLS 208
           DYS +      ++    Y   RG       + +   C   C +C+       +E+S    
Sbjct: 42  DYSADPSQRNTAVPGIYYTSYRGCRVPLFKVLLTNRCCNDCRYCINSSCEMPVELS--PE 99

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
           ++        +    +   L     +      D       + L  L  ++G         
Sbjct: 100 EIARVFLDYYERRYVDGLFLS----SGVSHDPDETMERLIETLRIL-RLEGYG----GYI 150

Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR--HTAYEYRQI--IDRIRS 324
           H + +    + +      L   + + +++ +   L  ++    +     R++  I R+R 
Sbjct: 151 HLKIIPGSSMDSIKRAMELASRVSINIETATPDGLDELSSTKDYGVDILRRMRWIHRLRK 210

Query: 325 VRPDIAI---SSDFIVGFPGETDDDFRATMDLV-DKIGYAQAFSFKYSPRLGTPGSNMLE 380
             P++A    S+  +VG   ETD+D    +  + D+    + +   + P  GTP  +  E
Sbjct: 211 RHPELAPSGQSTQLMVGAVDETDEDIVKRVGWIHDRFSIKRVYFSGFQPMEGTPLESRDE 270

Query: 381 QVDENV 386
                V
Sbjct: 271 ADPMRV 276


>gi|125973609|ref|YP_001037519.1| hypothetical protein Cthe_1094 [Clostridium thermocellum ATCC
           27405]
 gi|256003428|ref|ZP_05428419.1| Radical SAM domain protein [Clostridium thermocellum DSM 2360]
 gi|281417814|ref|ZP_06248834.1| Radical SAM domain protein [Clostridium thermocellum JW20]
 gi|125713834|gb|ABN52326.1| Radical SAM-like protein [Clostridium thermocellum ATCC 27405]
 gi|255992718|gb|EEU02809.1| Radical SAM domain protein [Clostridium thermocellum DSM 2360]
 gi|281409216|gb|EFB39474.1| Radical SAM domain protein [Clostridium thermocellum JW20]
 gi|316940149|gb|ADU74183.1| Radical SAM domain protein [Clostridium thermocellum DSM 1313]
          Length = 639

 Score = 53.8 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 51/270 (18%), Positives = 92/270 (34%), Gaps = 41/270 (15%)

Query: 147 KRVVDTDYSVEDKFERLSIVD--GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
           ++ +D  YS+  +     + D  GG      V   +T   GC   C+FC + + +G  I 
Sbjct: 280 EKEMDRIYSLPYERTYHPVYDKDGGVPAIEEVQFSITSHRGCYGGCSFCALNFHQGRIIQ 339

Query: 205 -RSLSQVVDEARK-LIDNGVC-EITLLGQNVNAWR-----------------------GK 238
            RS + +++EARK     G    I  +G     +R                        K
Sbjct: 340 KRSQASIINEARKLTWLPGFKGYIHDVGGPTANFRNKACKKQEISGACKERQCLYPKPCK 399

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVR------LRYTTSHPRDMSDCLIKAHGDLDVLMPYLH 292
            L  +   + +LL  L EI  + +      +RY         D  ++       +   L 
Sbjct: 400 NLIVDHSEYLELLRKLREIPEIKKVFIRSGIRYDYLMLDKNDDFFVELCRHH--VSGQLK 457

Query: 293 LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA----ISSDFIVGFPGETDDDFR 348
           +  +   DR+L+ M +      Y + + +   +   I     +    I   PG   +   
Sbjct: 458 VAPEHVVDRVLEKMGKP-QREVYDRFVKKFYEINRKIGKEQYLVPYLISSHPGSDLNAAI 516

Query: 349 ATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
              + +  I Y       + P  GT  + M
Sbjct: 517 ELAEYLRDINYTPQQVQDFYPTPGTLSTCM 546


>gi|319785117|ref|YP_004144593.1| radical SAM protein [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317171005|gb|ADV14543.1| Radical SAM domain protein [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 430

 Score = 53.8 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 33/245 (13%), Positives = 68/245 (27%), Gaps = 25/245 (10%)

Query: 152 TDYSVEDKFERLSIVDGGYNRKR-----GVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
            D+   +           ++ +      G  A +    GC   C+FC     R     R+
Sbjct: 172 VDHPPLEWPADWIAAHSHHHHRFDDNQVGFGAEVEASRGCPYNCSFCAKIDFRDAYRRRN 231

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
              VV E  +LI  GV  I  + +                      +L E      +++ 
Sbjct: 232 HEAVVAEIDRLIAQGVGYIYFIDE----------------IFLPQKALLEALVDRNVKFG 275

Query: 267 TSHPRD-MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
                D     L++  G        +   ++S +      + +R       ++   +   
Sbjct: 276 VQTRIDLWKPELLELLGAAG--CVSIEAGLESLTVEGRAMLAKR-CRLGTEELAALLVDA 332

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
           R  +      ++G   +           +   G          P   +P    L    ++
Sbjct: 333 RRHVPFVQANLIGVVEDDPALVEHWRTHLIDHGVWANEPVPLYPYPSSPSYRELWGEPDD 392

Query: 386 VKAER 390
           +  ER
Sbjct: 393 LAWER 397


>gi|225028476|ref|ZP_03717668.1| hypothetical protein EUBHAL_02753 [Eubacterium hallii DSM 3353]
 gi|224954226|gb|EEG35435.1| hypothetical protein EUBHAL_02753 [Eubacterium hallii DSM 3353]
          Length = 345

 Score = 53.8 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 29/231 (12%), Positives = 69/231 (29%), Gaps = 19/231 (8%)

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT-RGIEISR-SLS 208
           +++     K E + +    Y  K      +     C   C +C +    R +E  R S  
Sbjct: 27  NSEVMEYLKEEAVKVRKQYYGTKVFTRGLIEFTNYCKNNCYYCGIRRDNRNVERYRLSEE 86

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
           +++         G     L G       G+     +   +D++  + +      +  +  
Sbjct: 87  EILACCANGEKLGFRTFVLQG-------GEDPWYTQERIADIVKKIKKAHPDCAITLSVG 139

Query: 269 HPRDMSDCLIKAHGDLDVLMPY--LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
                     K  G    L+ +   +           +SM+  +       + +      
Sbjct: 140 EKSKEIYKAWKEAGADRYLLRHETANTSHYHMLHP--ESMHLSNRKQCLYDLKEL----- 192

Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
               + + F+VG PG+T +     +  + ++         + P   T  + 
Sbjct: 193 -GYQVGAGFMVGSPGQTWEHLAEDLVFLQELQPQMVGIGPFIPHHDTKFAK 242


>gi|68072649|ref|XP_678238.1| hypothetical protein [Plasmodium berghei strain ANKA]
 gi|56498639|emb|CAH93589.1| hypothetical protein PB000042.00.0 [Plasmodium berghei]
          Length = 325

 Score = 53.8 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 40/267 (14%), Positives = 88/267 (32%), Gaps = 27/267 (10%)

Query: 110 AQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTD-----YSVEDKFERLS 164
           AQ +G+    + P V    G     + P+    A  G++            +    E   
Sbjct: 4   AQNDGKNKKVKIPKV----GNAMPEKKPDFHVPAPNGEKYKKLKSDLGKLKLHTVCEEAQ 59

Query: 165 IVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVD---EARKLIDNG 221
             + G     G    + + + C + C FC +  +           + +    A+ + +  
Sbjct: 60  CPNIGECWNIGTATIMLLGDTCTRGCKFCSIKTSSKP----PPPDINEPFNTAKAICEWD 115

Query: 222 VCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPR-DMSDCLIKA 280
           +  I L   +    R    DG    F+  +  +   K  + +    S  + ++      A
Sbjct: 116 INYIVLTSVD----RDDLPDGGADHFAKTVELIKFSKPNILIECLVSDFQGNIDSIKRLA 171

Query: 281 HGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFP 340
              LDV    +         R+ K +  +    +   ++ + + + P++   +  ++G  
Sbjct: 172 LSGLDVYAHNIETV-----KRLQKYVRDKRNYEQSLFVLKKAKEINPNLYTKTSIMLGL- 225

Query: 341 GETDDDFRATMDLVDKIGYAQAFSFKY 367
           GET ++   TM      G       +Y
Sbjct: 226 GETQEEILQTMKDARSNGIDVITFGQY 252


>gi|238793686|ref|ZP_04637308.1| hypothetical protein yinte0001_630 [Yersinia intermedia ATCC 29909]
 gi|238726927|gb|EEQ18459.1| hypothetical protein yinte0001_630 [Yersinia intermedia ATCC 29909]
          Length = 307

 Score = 53.8 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 47/121 (38%), Gaps = 12/121 (9%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +L L +Q+ +D+ LK +NR H    Y+Q   R R+    + +    IVG PGE      A
Sbjct: 141 WLELGLQTANDKTLKRINRGHDFACYQQTARRARAR--GLKVCCHLIVGLPGEDKSQNMA 198

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDAC 409
           T++ V   G             G   S M        KA R   L +   EQ V      
Sbjct: 199 TLEQVVATGVDGLKLHPLHIVEG---STMG-------KAWRAGRLPELALEQYVVTAGEM 248

Query: 410 V 410
           +
Sbjct: 249 I 249


>gi|307544794|ref|YP_003897273.1| lipoyl synthase [Halomonas elongata DSM 2581]
 gi|307216818|emb|CBV42088.1| lipoyl synthase [Halomonas elongata DSM 2581]
          Length = 352

 Score = 53.8 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 36/227 (15%), Positives = 76/227 (33%), Gaps = 10/227 (4%)

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200
           ER    KR V+ ++ +          + G     G    + +   C + C FC V     
Sbjct: 52  ERFDAVKRNVN-EHRLSTVCAESHCPNMGECWSNGTATIMLMGSVCTRACRFCAVDTGNP 110

Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
                   +  + A  +   G+  + L   +    R    DG    ++D + ++      
Sbjct: 111 KGW-LDTEEPANTAESVELMGLRYVVLTSVD----RDDLPDGGATHYADCIRAIKARTPE 165

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
           V +   T    D           +D  +      V++      +  + R    +   ++ 
Sbjct: 166 VAVEALTP---DFDAEPSAIERVVDSGLEVFAQNVETVERLTQRVRDPRAGYRKTLDVLA 222

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
             +  RP++   +  ++G  GET+++   T D +  IG       +Y
Sbjct: 223 HAKRHRPEVITKTSLMLGL-GETEEEILQTFDDLRAIGVDIVTLGQY 268


>gi|207744770|ref|YP_002261162.1| oxygen-independent coproporphyrinogen III oxidase protein
           [Ralstonia solanacearum IPO1609]
 gi|206596180|emb|CAQ63107.1| oxygen-independent coproporphyrinogen III oxidase protein
           [Ralstonia solanacearum IPO1609]
          Length = 489

 Score = 53.8 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 39/193 (20%), Positives = 70/193 (36%), Gaps = 14/193 (7%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C   C +C        + +RS   +   AR++       I  L Q      G    G   
Sbjct: 85  CANLCYYCGCNKVVTKDHTRSARYIRALAREM-AMIARHIGPLRQATQLHWG----GGTP 139

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL-------MPYLHLPVQSG 298
           TF      + ++    R  +  +   ++S  L   H   D L            L +Q  
Sbjct: 140 TF-LSHDEMRDVMAATRKHFALTSDAEISVELDPRHAGDDTLAVLADLGFNRASLGIQDF 198

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
              +  +++R  +  + R ++D  R +    +IS D I G P +  D F AT+D V ++ 
Sbjct: 199 DADVQHAIHRVQSVEQTRHVVDSARRLGFQ-SISFDLIYGLPHQHIDTFNATLDRVLEMA 257

Query: 359 YAQAFSFKYSPRL 371
             +   + Y+   
Sbjct: 258 PDRLSVYSYAHLP 270


>gi|219848042|ref|YP_002462475.1| lipoyl synthase [Chloroflexus aggregans DSM 9485]
 gi|254809182|sp|B8G782|LIPA_CHLAD RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|219542301|gb|ACL24039.1| lipoic acid synthetase [Chloroflexus aggregans DSM 9485]
          Length = 306

 Score = 53.8 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 31/214 (14%), Positives = 71/214 (33%), Gaps = 14/214 (6%)

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           ++V ++    +I +   +R      FL + + C + C +C +   +G        +    
Sbjct: 52  HTVCEEARCPNIGECWNHRT---ATFLLLGDICTRGCRYCAI--GKGKPKPIDEEEPERV 106

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
           A  +    +    L   N    R    DG    F+  +  + +     ++          
Sbjct: 107 AESVAHLRLKFAVLTSVN----RDDVPDGGAHIFARTIELIRQKVPDCKVEVLIPDFDGN 162

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
            D L         ++ +    V     R            +  +++ R R+  P +   S
Sbjct: 163 WDALAMVLDAEPDVLNHNIETVPRLFRRFRPRAK----FEQSIELLARARAAHPHLVTKS 218

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
             +VG  GET+++    +D + ++        +Y
Sbjct: 219 GMMVG-AGETNEEVYEVIDRLREVDVNVLTIGQY 251


>gi|114569986|ref|YP_756666.1| lipoyl synthase [Maricaulis maris MCS10]
 gi|122316062|sp|Q0APQ9|LIPA_MARMM RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|114340448|gb|ABI65728.1| lipoic acid synthetase [Maricaulis maris MCS10]
          Length = 325

 Score = 53.8 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 34/242 (14%), Positives = 77/242 (31%), Gaps = 13/242 (5%)

Query: 127 VVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGC 186
           V+    + R+   L +     + +  D  +    E     + G   ++    F+ + + C
Sbjct: 32  VLRKPDWIRVKAPLGKTFSETQKIVKDGGLVTVCEEAGCPNIGECWEQKHATFMILGDTC 91

Query: 187 DKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT 246
            + C+FC V       +     +    A  +   G+  + +   +    R    DG    
Sbjct: 92  TRACSFCNVKTGLPAAV--DTDEPRRVAEAVAQMGLNHVVITSVD----RDDLDDGGAQH 145

Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306
           F D++ ++        +   T                   +  +        +   L   
Sbjct: 146 FVDVIEAIRAATPSTTIEILTPDFLRKPGAAEAVIDARPDVFNHNL-----ETVPRLYLS 200

Query: 307 NRRHTAYEY-RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
            R    Y +  ++++R++   P     S  +VG  GE+ ++    MD +   G       
Sbjct: 201 IRPGARYFHSLRLLERVKDRDPAQFTKSGIMVGL-GESKEEVMQVMDDMRSAGIDFLTIG 259

Query: 366 KY 367
           +Y
Sbjct: 260 QY 261


>gi|66046652|ref|YP_236493.1| coproporphyrinogen III oxidase [Pseudomonas syringae pv. syringae
           B728a]
 gi|63257359|gb|AAY38455.1| Oxygen-independent coproporphyrinogen III oxidase HemN [Pseudomonas
           syringae pv. syringae B728a]
          Length = 461

 Score = 53.8 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 46/267 (17%), Positives = 93/267 (34%), Gaps = 29/267 (10%)

Query: 160 FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC----VVPYTRGIEIS---RSLSQVVD 212
           FE L  +       R ++ ++ +   C   C +C    V+   RG   +   R   ++  
Sbjct: 38  FELLHALRESRKASRPLSLYVHLPF-CANICYYCACNKVITKDRGRAQAYLQRLEHEIQM 96

Query: 213 EARKLI-DNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPR 271
            A  L     V ++ L G          L             L +  G   +        
Sbjct: 97  LACHLAPGQVVEQLHLGGGTPTFLSHAELRRLMAQLRLHFNLLEDDSGDYGIEIDPREAD 156

Query: 272 DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAI 331
             +  L++  G        + L VQ     + +++NR  +  E R I++  R+++   ++
Sbjct: 157 WATMGLLRELG-----FNRVSLGVQDLDPTVQRAINRMQSLEETRAIVEAARTLQFR-SV 210

Query: 332 SSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY-------SPRLGTPGSNMLEQVDE 384
           + D I G P +    F  T+D V  +   +   F Y        P+     +++ +   +
Sbjct: 211 NIDLIYGLPAQNPQTFSHTVDKVIDLQPDRLSVFNYAHLPERFMPQRRIDAADLPDAASK 270

Query: 385 NVKAERLLCLQKKLREQQVSFNDACVG 411
                 LL LQ+ + +   +     +G
Sbjct: 271 ------LLMLQRTVEQLGNAGY-RYIG 290


>gi|33241105|ref|NP_876047.1| SAM radical enzyme [Prochlorococcus marinus subsp. marinus str.
           CCMP1375]
 gi|33238635|gb|AAQ00700.1| SAM radical enzyme [Prochlorococcus marinus subsp. marinus str.
           CCMP1375]
          Length = 894

 Score = 53.8 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 33/206 (16%), Positives = 69/206 (33%), Gaps = 22/206 (10%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
           + I+ GC + C FC               +V++       NG+ +      ++ +     
Sbjct: 278 IEIRRGCTRGCRFCQPGMLTRPARDVEPKEVIEAVE----NGMKKTGYSDFSLLSLSCSD 333

Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
                    +L   L E    + L+  +       D +    G        L    ++G+
Sbjct: 334 YLSLPEVGVELRNRLGE--KNITLQLPSQRVDRFDDNIAHILGGSRQA--GLTFAPEAGT 389

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPD--IAISSDFIVGFPGETDDDFR---ATMDLV 354
            R+   +N+  T     ++++ IR         +   F++G PGE D+D +    T   +
Sbjct: 390 QRLRNIINKGLTND---ELLNGIRKAMEHQYKKVKLYFMIGLPGELDEDIQGIAQTCKWL 446

Query: 355 DKIGYA------QAFSFKYSPRLGTP 374
            +                ++P+  TP
Sbjct: 447 QEQCQDIGRLKLNITISNFTPKPHTP 472


>gi|238927752|ref|ZP_04659512.1| possible coproporphyrinogen dehydrogenase [Selenomonas flueggei
           ATCC 43531]
 gi|238884468|gb|EEQ48106.1| possible coproporphyrinogen dehydrogenase [Selenomonas flueggei
           ATCC 43531]
          Length = 389

 Score = 53.8 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 41/230 (17%), Positives = 72/230 (31%), Gaps = 11/230 (4%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR---GKGLDG 242
           C K C +C        +    +          I   V  +     +        G     
Sbjct: 19  CVKKCAYCDFVSVPSAQRGAEMEDYAAALTAEILREVPPLRARWGDAATIYVGGGTPTAL 78

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
                + +L++L+   G       +      +   +            L L VQS  D +
Sbjct: 79  PAPLLTGVLHTLTAAAG--EPLECSVEANPGTVDEVYLGALRAAGANRLSLGVQSFDDEL 136

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           L+++ R HTA E  +     R+      IS D + G PG+T D  R +      +     
Sbjct: 137 LRAVGRIHTAEEAERAFHAARAAGFG-NISIDLMYGLPGQTLDRLRRSAAAAAALAPEHL 195

Query: 363 FSFKYSPRLGTPGSNM-----LEQVDENVKAERLLCLQKKLREQQVSFND 407
             +  +   GTP + M     L    E+   E    L  +L  +  +  +
Sbjct: 196 SVYGLTIEEGTPFAAMQAAGRLNLPTEDAAEEMYDFLMAELPARGYARYE 245


>gi|269119722|ref|YP_003307899.1| radical SAM protein [Sebaldella termitidis ATCC 33386]
 gi|268613600|gb|ACZ07968.1| Radical SAM domain protein [Sebaldella termitidis ATCC 33386]
          Length = 364

 Score = 53.8 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 33/237 (13%), Positives = 84/237 (35%), Gaps = 22/237 (9%)

Query: 164 SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL--SQVVDEARKLIDNG 221
           SI +    RK      +     C K C +C +           +   +++  A+   +N 
Sbjct: 37  SIKEKYVGRKAYYRGLIEFSNRCVKNCYYCGIRSGNENVERFDMSGDEIIKMAKWAYENN 96

Query: 222 VCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAH 281
              +TL        + K  +         +  +S+   L           D+     +A 
Sbjct: 97  YGSVTLQS---GERQDKNFEKFVKDMILDIKKVSD-GKLGLTLCLGEQTEDIYREWFEAG 152

Query: 282 GDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP-DIAISSDFIVGFP 340
           G          L +++ ++ + K ++  +  + +++ +D +++++     + +  ++G P
Sbjct: 153 GHR------YLLRIETTNEELYKVIHPDNNIHSFQKRVDCLKTLKKIGYQVGTGVMIGLP 206

Query: 341 GETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV------DENVKAERL 391
           G+T++D    +   +++         Y     TP   + + V       E  K +R 
Sbjct: 207 GQTEEDLVNDILFFEEMDIDMIGMGPYVVHKDTP---LGKDVINNDLNTEEEKYKRF 260


>gi|163793254|ref|ZP_02187230.1| lipoyl synthase [alpha proteobacterium BAL199]
 gi|159181900|gb|EDP66412.1| lipoyl synthase [alpha proteobacterium BAL199]
          Length = 337

 Score = 53.8 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 30/198 (15%), Positives = 68/198 (34%), Gaps = 17/198 (8%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C+FC +    G        +  + A+ +   G+  + +   +    R    DG   
Sbjct: 89  CTRACSFCNI--ATGRPDQLDPHEPENVAQSVAKLGLSHVVITSVD----RDDLDDGGAG 142

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL--HLPVQSGSDRIL 303
            F++ +  +        +   T       D L    G    +  +    +P   G     
Sbjct: 143 HFAETILRIRRASPRTTIEVLTPDFLRKKDALAMVVGARPDVFNHNLETVPRLYGEV--- 199

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
                R+ A    +++ +++ + P +   S  +VG  GE  ++    MD +         
Sbjct: 200 -RPGARYFAS--LRLLQQVKELDPSMFTKSGIMVGL-GEGREEVLQLMDDLRAADVDFMT 255

Query: 364 SFKYSPRLGTPGSNMLEQ 381
             +Y     TP  +++++
Sbjct: 256 IGQY--LQPTPKHHVVDR 271


>gi|52081728|ref|YP_080519.1| lipoyl synthase [Bacillus licheniformis ATCC 14580]
 gi|52004939|gb|AAU24881.1| lipoic acid synthetase [Bacillus licheniformis ATCC 14580]
          Length = 298

 Score = 53.8 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 34/217 (15%), Positives = 76/217 (35%), Gaps = 13/217 (5%)

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
           +  ++V ++ +  +I +    R+     F+ +   C + C FC V      E+   L++ 
Sbjct: 34  NNLHTVCEEAKCPNIHECWAVRR--TATFMILGSVCTRACRFCAVKTGLPTEL--DLNEP 89

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270
              A  +    +    +        R    DG    F++ + ++        +    S  
Sbjct: 90  ERVADSVSIMNLKHAVITAV----ARDDLKDGGAGVFAETVRAVRRKSPFTTIEVLPSDM 145

Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330
               + L         ++ +    V+  +      +  R T     + + R + ++PDI 
Sbjct: 146 GGDYNNLKTLMDTRPDILNHNIETVRRLTP----RVRARATYERSLEFLRRAKEMQPDIP 201

Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
             S  ++G  GET ++   TMD +           +Y
Sbjct: 202 TKSSIMIGL-GETKEEIIETMDDLLANNVDIMAIGQY 237


>gi|330445203|ref|ZP_08308855.1| lipoic acid synthetase [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328489394|dbj|GAA03352.1| lipoic acid synthetase [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 323

 Score = 53.8 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 25/183 (13%), Positives = 59/183 (32%), Gaps = 12/183 (6%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V    G  +  +  +    A+ + D  +  + +   +    R    DG   
Sbjct: 96  CTRRCPFCDV--AHGRPLPPNAEEPAHLAQTIADMKLRYVVVTSVD----RDDLRDGGAQ 149

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL-DVLMPYLHLPVQSGSDRILK 304
            F D +  +      + +       R   D  +    D    +  +        + R+ +
Sbjct: 150 HFVDCINEIRAKSPEIHIETLVPDFRGRMDRALDIFRDTAPNVFNHNL----ETAPRLYR 205

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
                        ++ + + + P++   S  ++G  GET ++    +  +   G      
Sbjct: 206 KARPGANYQWSLDLLKKFKELHPNVPTKSGLMMGL-GETKEEIIEVLKDLRAHGVTMLTL 264

Query: 365 FKY 367
            +Y
Sbjct: 265 GQY 267


>gi|315657198|ref|ZP_07910082.1| coproporphyrinogen dehydrogenase [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
 gi|315492301|gb|EFU81908.1| coproporphyrinogen dehydrogenase [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
          Length = 471

 Score = 53.8 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 30/137 (21%), Positives = 49/137 (35%), Gaps = 2/137 (1%)

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304
                +L  LSE  GLV     T+     +                +   +QS    +L 
Sbjct: 113 TDLVRVLRGLSETFGLVPGAEITTEANPDTVTPQYLEALAAGGFTRVSFGMQSAVPAVLA 172

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
           ++NR H        +   R+    + +S D I G PGE+  D+R ++D   ++G      
Sbjct: 173 TLNRTHQQKHLVAGVRAARAQ--GLEVSVDLIYGTPGESLADWRTSLDAALELGADHVSC 230

Query: 365 FKYSPRLGTPGSNMLEQ 381
           +      GT     L Q
Sbjct: 231 YALVIEPGTALGRALAQ 247


>gi|307565525|ref|ZP_07628005.1| radical SAM protein, TIGR01212 family [Prevotella amnii CRIS 21A-A]
 gi|307345684|gb|EFN91041.1| radical SAM protein, TIGR01212 family [Prevotella amnii CRIS 21A-A]
          Length = 315

 Score = 53.8 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 37/217 (17%), Positives = 75/217 (34%), Gaps = 26/217 (11%)

Query: 180 LTIQEG--CDKF--------CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLG 229
           ++I  G  C           C +C          S  +        + I+ G       G
Sbjct: 40  ISIDAGFTCPNRDGSIGKGGCIYCDNRTFNPSYCS--VEN--KSVTRQIEEGKRF--FSG 93

Query: 230 QNVNAWR------GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGD 283
           +  N              G+      L     +++ +V +   T  P  +S+ L+    +
Sbjct: 94  KYPNMKYLAYFQAYTNTYGDIQHLKRLYSEALQVEDVVGIVIGT-RPDCVSEDLLNYFTE 152

Query: 284 LDVL-MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGE 342
           L+ +    +   +++ +D  L+ +NR HT    RQ+I+  R+    I + +  I+G PGE
Sbjct: 153 LNKVTFLLVEYGIETVNDATLRLINRGHTFACSRQMIE--RTAARGIRVGAHIILGLPGE 210

Query: 343 TDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
              +      ++  +        +     GT  + M 
Sbjct: 211 DRQESLRQAPIISSLPLTTLKIHQMQIIRGTKLAKMY 247


>gi|302560665|ref|ZP_07313007.1| Fe-S oxidoreductase [Streptomyces griseoflavus Tu4000]
 gi|302478283|gb|EFL41376.1| Fe-S oxidoreductase [Streptomyces griseoflavus Tu4000]
          Length = 662

 Score = 53.8 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 75/419 (17%), Positives = 126/419 (30%), Gaps = 74/419 (17%)

Query: 52  GYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVV----VAG 107
           G+   N    AD I    C +     + V      +R  K      G + L++      G
Sbjct: 166 GHAAFNPEPIADFI---DCAVIGDGEQAVLEITRIVRAWKEEGRPGGREELLLRLAKTGG 222

Query: 108 CVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVD 167
                  +        +  VV  ++                V+D D     K   + + +
Sbjct: 223 VYVPGFYDVEYLPDGRIARVVPNRSGVPWR------VSKHTVMDLDEWPYPKQPLVPLAE 276

Query: 168 GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEIT 226
             + R       + I  GC + C FC           RS++ + D   K +   G  E+ 
Sbjct: 277 TVHERMS-----VEIFRGCTRGCRFCQAGMITRPVRERSITGIGDMVDKGLKATGFEEVG 331

Query: 227 LLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV 286
           LL     +       G+        Y   +I     L   ++     +  L         
Sbjct: 332 LLS---LSSADHSEIGDIAKGLADRYEEDKIG----LSLPSTRVDAFNIDLANELTRNGR 384

Query: 287 LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR-----IRSVRPDIAISSDFIVGFPG 341
               L    + GS+RI K +N+  +  +  + +        R V+        F+ G P 
Sbjct: 385 -RSGLTFAPEGGSERIRKVINKMVSEDDLIRTVATAYGNGWRQVK------LYFMCGLPT 437

Query: 342 ETDDDFRATMDLV-------------DKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
           ETDDD     D+              + I         + P+  TP      Q+      
Sbjct: 438 ETDDDVLQIADMATRVIAKGREVSGSNDIRCT-VSIGGFVPKPHTP-FQWAPQLSAEQTD 495

Query: 389 ERLLCLQKKLR---------------------EQQVSFNDACVGQIIEVLIEKHGKEKG 426
           ERL  L+ K+R                     E  +S  D  +G +I  + E  G+  G
Sbjct: 496 ERLTKLRDKIRGDKKYGRSIGFRYHDGKPGIVEGLLSRGDRRIGAVIRAVYEDGGRFDG 554


>gi|238018686|ref|ZP_04599112.1| hypothetical protein VEIDISOL_00530 [Veillonella dispar ATCC 17748]
 gi|237865157|gb|EEP66447.1| hypothetical protein VEIDISOL_00530 [Veillonella dispar ATCC 17748]
          Length = 575

 Score = 53.8 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 42/267 (15%), Positives = 97/267 (36%), Gaps = 40/267 (14%)

Query: 175 GVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA 234
           G    + +  GC + C FC+  Y   +   R L  + +   +    G     +       
Sbjct: 247 GAMYIIEVARGCGRHCRFCMAGYCFRVPRVRPLEILKEGVDRAEKLGKKVGLMGA----- 301

Query: 235 WRGKGLDGEKCTFSDLLYSLSEIK-GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHL 293
                       + ++   ++ I+   +R    +     ++  ++    D       + +
Sbjct: 302 --------AISDYPEVDELVNYIRSKDMRYSCASLRADSLTQAVVDGLADSGQ--KTITI 351

Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA---- 349
             ++GS+R+ + +N+  +  E+ Q    + +      +    ++G P ETD+D  A    
Sbjct: 352 APETGSERLRRVINKGIS-EEHLQNAATLSAKSGIQHMRLYIMIGLPTETDEDIEAIVGL 410

Query: 350 ---TMDLVDKIGYA---QAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQV 403
              T   + ++G           + P+  TP   M     + V+ + L  ++K L++   
Sbjct: 411 AERTQAHMAEVGCKGRLTLSINPFIPKPFTPFQWMAMDHQKTVEKK-LQYIKKALQKN-- 467

Query: 404 SFNDACVGQIIEVLIEKHGKEKGKLVG 430
                   + IEVL+E    ++  + G
Sbjct: 468 --------RRIEVLVE--SPKEAYIQG 484


>gi|217968551|ref|YP_002353785.1| radical SAM protein [Thauera sp. MZ1T]
 gi|217505878|gb|ACK52889.1| Radical SAM domain protein [Thauera sp. MZ1T]
          Length = 643

 Score = 53.8 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 32/182 (17%), Positives = 66/182 (36%), Gaps = 19/182 (10%)

Query: 180 LTIQEGCDKF-CTFCVVPYTR-GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG 237
           LT+  GC    C+FC V     G     +   +VD    +I          GQ    +  
Sbjct: 373 LTVAHGCYWKKCSFCDVSLDYIGRYDGAAAGLLVDRIEAIIAE-------TGQTGFHFVD 425

Query: 238 KGLDGE--KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPV 295
           +    +  +    +LL     I     +R+     +  S  L +   D   +       +
Sbjct: 426 EAAPPKALRALAEELLRRGLAISWWGNIRF----EKSFSPELCQLLADSGCIAVSG--GL 479

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
           +  SDR+L+ M +  +  +  ++     +    + + +  + GFP +T  D    ++ V 
Sbjct: 480 EVASDRLLQLMKKGVSVEQVARVTHAFTAA--GVLVHAYLMYGFPTQTVHDTVDALEYVR 537

Query: 356 KI 357
           ++
Sbjct: 538 QL 539


>gi|157959926|ref|YP_001499960.1| coproporphyrinogen III oxidase [Shewanella pealeana ATCC 700345]
 gi|157844926|gb|ABV85425.1| oxygen-independent coproporphyrinogen III oxidase [Shewanella
           pealeana ATCC 700345]
          Length = 446

 Score = 53.8 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 35/234 (14%), Positives = 77/234 (32%), Gaps = 17/234 (7%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C K C +C         I+R   +       L    V    L     N    +   G   
Sbjct: 51  CAKLCYYC----GCNKVITRHQHKADQYIEYLAAEIVKRAPLFK---NYLVTQIHWGGGT 103

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL-------MPYLHLPVQSG 298
                   + ++  L++  +  +   + S  +     +L +L          + + VQ  
Sbjct: 104 PTFLTPEQILKLSALIKANFNVADVGEYSIEVDPREIELSMLDTLKEAGFNRISIGVQDF 163

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           + ++  ++NR         ++ R + +   ++ + D I G P +T + F  TM  V  + 
Sbjct: 164 NKKVQVAVNREQDEQFIFDLMARAKEL-GFVSTNIDLIYGLPHQTPETFAETMQRVLDLN 222

Query: 359 YAQAFSFKYSPRL-GTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVG 411
             +   F Y+           ++  D     ++L  L + +     +     +G
Sbjct: 223 PDRLSVFNYAHLPSRFAAQRKIKDEDLASPQQKLDMLHQTIETLTGAGYQ-YIG 275


>gi|160874375|ref|YP_001553691.1| putative radical SAM protein [Shewanella baltica OS195]
 gi|160859897|gb|ABX48431.1| conserved hypothetical radical SAM protein [Shewanella baltica
           OS195]
 gi|315266610|gb|ADT93463.1| conserved hypothetical protein [Shewanella baltica OS678]
          Length = 309

 Score = 53.8 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 41/238 (17%), Positives = 76/238 (31%), Gaps = 34/238 (14%)

Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW--------RGKG 239
             CTFC V        S   + ++    + ++ G            A             
Sbjct: 43  GGCTFCNV-----ASFSHQTADML-SITEQLEQGKSRYREAKPQAQADKFIAYFQAYTST 96

Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV--LMPYLHLPVQS 297
            D  +   +    ++    G +      + P  + D ++          +  +L L +Q+
Sbjct: 97  YDEYQVLMAKYDEAVK--DGEIVGLCVGTRPDCVPDNVLDLLASYQANGVDVWLELGLQT 154

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
             D  L+ +NR H    Y   + R R+    + + +  I+G P ET  D+ AT+  V + 
Sbjct: 155 AKDETLRKINRGHDFGCYCDTVSRARAR--GLKVCTHLILGLPDETHSDYMATLAAVLQQ 212

Query: 358 GYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIE 415
           G             G+  +          KA R   L        +      VG++I 
Sbjct: 213 GVDGLKLHPLHVVEGSTMA----------KAWRSGRLPLL----SLEDYARSVGEMIR 256


>gi|116620005|ref|YP_822161.1| radical SAM domain-containing protein [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116223167|gb|ABJ81876.1| Radical SAM domain protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 631

 Score = 53.8 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 56/328 (17%), Positives = 102/328 (31%), Gaps = 67/328 (20%)

Query: 90  LKNSRIKEGGDLLVVVAGCVAQ-AEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
           L +   +    + +V+ G   +   GE++ +  P ++ V   Q+ +  P+ +E     ++
Sbjct: 148 LASRIKRRFPRICIVMGGANCESEMGEQLHKSFPFLDYVFTGQSDWSFPQFVEHVITNRQ 207

Query: 149 VVDTDYSVEDK---------------FERLSIVDG----------GYNRKRGVTAFLTIQ 183
           V      V  +                 RL + D               K  V       
Sbjct: 208 VDAIRGLVHRRGGVSVSTGRPEPVGDLNRLPVPDYDDYVTQLGAYRLLGKLPVRLQFETS 267

Query: 184 EGCDK----FCTFC-----VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA 234
            GC       CTFC      + +        S  +VVDE   L             N   
Sbjct: 268 RGCWWGMKQHCTFCGFNAETMQFAAK-----SPGRVVDELEYLASRY---------NTTE 313

Query: 235 WRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP 294
           +       +   F+ +L  L+E K    L Y            + A       + Y+   
Sbjct: 314 FDAVDNILDYRAFATVLPRLAERKPAFSLFYEIKSNLRRDQVRLLAQAG----VRYIQPG 369

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           ++S + ++L  M +  TA +  Q++   R     I  S + I GFP E  + +     ++
Sbjct: 370 IESLNTQVLGVMKKGLTALQNIQVLKWCREFA--IVPSWNLIYGFPDELPEAYAEMASVM 427

Query: 355 D------------KIGYAQAFSFKYSPR 370
                        KI   +      +P 
Sbjct: 428 RWLHHLPAPRGSGKIRLDRFSPHWSNPE 455


>gi|172058338|ref|YP_001814798.1| lipoyl synthase [Exiguobacterium sibiricum 255-15]
 gi|171990859|gb|ACB61781.1| lipoic acid synthetase [Exiguobacterium sibiricum 255-15]
          Length = 299

 Score = 53.8 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 33/214 (15%), Positives = 74/214 (34%), Gaps = 13/214 (6%)

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           ++V ++ +  +I +    R+     F+ +   C + C FC V   R  E+   L +    
Sbjct: 36  HTVCEEAKCPNIHECWAVRR--TATFMILGSICTRACRFCAVTTGRPNEL--DLEEPKRV 91

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
           A  +    +    +        R    D     +++ +  +  +     +    S     
Sbjct: 92  AESVRLMNLKHAVITAV----ARDDLNDFGAGVYAETVREVRRMNPETSIEVLPSDMGGN 147

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
            + L         +M +    V+  +     ++  + T     + + R + + P+I   S
Sbjct: 148 FEALQTLIEAKPDIMNHNIETVRRLTP----TVRAKATYDRTLEFLRRSKELAPEIPTKS 203

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
             ++G  GET D+   TMD +           +Y
Sbjct: 204 SLMLGL-GETWDEILQTMDDLRANDVDIMTIGQY 236


>gi|299530175|ref|ZP_07043601.1| coproporphyrinogen III oxidase [Comamonas testosteroni S44]
 gi|298721832|gb|EFI62763.1| coproporphyrinogen III oxidase [Comamonas testosteroni S44]
          Length = 460

 Score = 53.8 bits (128), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 30/190 (15%), Positives = 68/190 (35%), Gaps = 8/190 (4%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLS--QVVDEARKLIDNGVCEITLLGQ-NVNAWRGKGL-D 241
           C+  C +C           ++      +     +      +  L+ Q ++         D
Sbjct: 64  CESLCYYCACNKIVTKHHEKAAEYLDYLSRELAMHTEHCGKGQLVSQLHLGGGTPTFFSD 123

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
            E      L+    ++            PR +S+  ++A  D+      L   VQ     
Sbjct: 124 AELQQLMVLMREHFKLDPAGEYSIEV-DPRTVSNERLRALKDMG--FNRLSFGVQDFDPA 180

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
           + K+++R   A +   ++   R +   ++I+ D I G P +T + F  T+  V+++   +
Sbjct: 181 VQKAVHREQPAEQVFSLVAEARRL-GFVSINVDLIYGLPRQTPESFARTLAQVNELRPDR 239

Query: 362 AFSFKYSPRL 371
              + Y+   
Sbjct: 240 IALYAYAHLP 249


>gi|119489018|ref|ZP_01621953.1| lipoic acid synthetase [Lyngbya sp. PCC 8106]
 gi|119454974|gb|EAW36117.1| lipoic acid synthetase [Lyngbya sp. PCC 8106]
          Length = 312

 Score = 53.8 bits (128), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 25/189 (13%), Positives = 57/189 (30%), Gaps = 12/189 (6%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V             +    A  +   G+  + L        R    DG   
Sbjct: 81  CTRSCAFCQVDKGHAPM-PLDPDEPQKVAEAVKLLGLRYVVLTSV----ARDDLTDGGSG 135

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPR--DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
            F   + ++ +      +   T+          L +        +        + +   +
Sbjct: 136 VFVATMEAIRQQNPETEIEVLTADFWGGQGGGDLYELQAQRIATVVAAQPACYNHNVETV 195

Query: 304 K----SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
           +     + R         ++  ++ + P I   S  ++G  GET+ +   T+  + +I  
Sbjct: 196 RRLQGIVRRGAKYDRSLDVLRIVKKLNPTIPTKSGLMLG-HGETEAEIIETLQDLREIEC 254

Query: 360 AQAFSFKYS 368
            +    +Y 
Sbjct: 255 DRITLGQYM 263


>gi|303229254|ref|ZP_07316050.1| radical SAM domain protein [Veillonella atypica ACS-134-V-Col7a]
 gi|302516109|gb|EFL58055.1| radical SAM domain protein [Veillonella atypica ACS-134-V-Col7a]
          Length = 575

 Score = 53.8 bits (128), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 42/286 (14%), Positives = 100/286 (34%), Gaps = 48/286 (16%)

Query: 175 GVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA 234
           G    + +  GC + C FC+  Y   +   R L  + +   +    G     +       
Sbjct: 247 GAMYIIEVARGCGRHCRFCMAGYCFRVPRVRPLDILKEGVDRAEKLGKKVGLMGA----- 301

Query: 235 WRGKGLDGEKCTFSDLLYSLSEIK-GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHL 293
                       + ++   ++ I+   +R    +     ++  ++    +       + +
Sbjct: 302 --------AISDYPEVDELVTYIRSKDMRYSCASLRADSLTQAVVDGLAESGQ--KTITI 351

Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDF------ 347
             ++GS+R+ + +N+  +  E  +   ++ +      +    ++G P ETD+D       
Sbjct: 352 APETGSERLRRVINKGIS-EENLRTAAQLSAKSGIQHMRLYIMIGLPTETDEDIDAIVGL 410

Query: 348 -RATMDLVDKIGYA---QAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQV 403
              T   + ++G           + P+  TP   M     ++V+ +    LQ    ++ +
Sbjct: 411 AERTQAHMAEVGCKGRLTLSINPFIPKPFTPFQWMAMDHQKSVEKK----LQYI--KKSL 464

Query: 404 SFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGD 449
             N       IEVL+E    ++  + G        VL   +  +G 
Sbjct: 465 QKNRR-----IEVLVE--SPKEAYIQG--------VLARGDRRLGK 495


>gi|229496612|ref|ZP_04390326.1| radical SAM domain protein [Porphyromonas endodontalis ATCC 35406]
 gi|229316509|gb|EEN82428.1| radical SAM domain protein [Porphyromonas endodontalis ATCC 35406]
          Length = 648

 Score = 53.8 bits (128), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 50/337 (14%), Positives = 104/337 (30%), Gaps = 90/337 (26%)

Query: 158 DKFERLSIVDGGYNRKRG--VTAFLTI------QEGCDKFCTFCVVPYTRGIEI-SRSLS 208
           D    L      + R +G  +TA+  I        GC   C FC +   +G  + SRS +
Sbjct: 279 DASFDLPYTRLPHPRYKGKTITAYEMIKHSVNLHRGCFGGCAFCTISAHQGKFVASRSEA 338

Query: 209 QVVDEARKLIDNGVCEITLL---GQNVNAWRGKGLDGEKCT------------------- 246
            V+ E   + +    +  L    G + N +R +G++ E C                    
Sbjct: 339 SVLKEVGAITEMDDFKGYLSDVGGPSANMYRMEGVNRELCARCVRPSCIFPAICPNLNAN 398

Query: 247 ---FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLD-----------VLMPYLH 292
               +DLL  + +I  + +    +    D+   L++ + + +           ++  +  
Sbjct: 399 HKPLNDLLDKVDKIPEIKKSFIGSGVRYDL---LLEEYKNPEYQREAKRYTESLIAHHTS 455

Query: 293 ----LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA--------ISSDFIVGFP 340
               +  +  S  +LK M +         + +R   +  ++         +   FI   P
Sbjct: 456 GRLKVAPEHTSPNVLKIMRKP-----PFSLFERFTRIFDEVNKKYGLKQQLIPYFISSHP 510

Query: 341 GETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-------------NMLEQVDENVK 387
              + D      L  ++ +       ++P   T  +              +   +    K
Sbjct: 511 NSHEVDMAELAVLTKRLNFHLEQVQDFTPTPMTLATEIYYTGYHPYTLEKLYCAISPEEK 570

Query: 388 ------------AERLLCLQKKLREQQVSFNDACVGQ 412
                        ER   +Q      +    +A  GQ
Sbjct: 571 RKQRRYFFWYKPEERRELIQALQSLHRPDLIEALFGQ 607


>gi|197248034|ref|YP_002148923.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197211737|gb|ACH49134.1| oxygen-independent coproporphyrinogen III oxidase [Salmonella
           enterica subsp. enterica serovar Agona str. SL483]
          Length = 485

 Score = 53.8 bits (128), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 40/248 (16%), Positives = 87/248 (35%), Gaps = 20/248 (8%)

Query: 173 KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEI--TLLGQ 230
           +R ++ ++ I   C K C FC        +  +   Q +D   + I +         + Q
Sbjct: 78  ERPLSLYVHIPF-CHKLCYFCGCNKIVTRQQHK-ADQYLDALEQEIRHRAPLFADRHVSQ 135

Query: 231 NVNAWRGKGLDGEKCTFSDLLYSLSE-----IKGLVRLRYTTSHPRDMSDCLIKAHGDLD 285
            ++   G      K   S L+  L E         + +      PR++   ++       
Sbjct: 136 -LHWGGGTPTYLNKAQISRLMTLLRENFHFNTDAEISIEV---DPREIELDVLDHLRAEG 191

Query: 286 VLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS-DFIVGFPGETD 344
                L + VQ  +  + + +NR         +++  R +      ++ D I G P +T 
Sbjct: 192 --FNRLSMGVQDFNKEVQRLVNREQDEEFIFALLNHARDI--GFTSTNIDLIYGLPKQTP 247

Query: 345 DDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQV 403
           + F  T+  V ++   +   F Y+       +   ++  D     ++L  LQ+ +     
Sbjct: 248 ESFAFTLKRVTELNPDRLSVFNYAHLPTLFAAQRKIKDADLPSAQQKLDILQETIVSLTQ 307

Query: 404 SFNDACVG 411
           +     +G
Sbjct: 308 AGYQ-FIG 314


>gi|110633976|ref|YP_674184.1| lipoyl synthase [Mesorhizobium sp. BNC1]
 gi|123057925|sp|Q11HV6|LIPA_MESSB RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|110284960|gb|ABG63019.1| lipoic acid synthetase [Chelativorans sp. BNC1]
          Length = 322

 Score = 53.8 bits (128), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 30/194 (15%), Positives = 70/194 (36%), Gaps = 11/194 (5%)

Query: 174 RGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVN 233
           +    F+ + E C + C FC V    GI      ++  + A+ + + G+  + +   +  
Sbjct: 73  KKHATFMIMGEICTRACAFCNV--ATGIPGPLDPNEPANVAKAVREMGLNHVVITSVD-- 128

Query: 234 AWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHL 293
             R    DG    F+D++ ++        +   T         L         +  +   
Sbjct: 129 --RDDLNDGGAQHFADVIQAIRAATPQTTIEILTPDFLRKDGALELVVAAKPDVFNH--- 183

Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
            +++   + L ++      +   +++ R++ + P I   S  +VG  GE  ++    MD 
Sbjct: 184 NLETVPSKYL-TVRPGARYFHSIRLLQRVKEIDPSIFTKSGIMVGL-GEERNEVLQLMDD 241

Query: 354 VDKIGYAQAFSFKY 367
           +           +Y
Sbjct: 242 LRSADVDFITIGQY 255


>gi|330992540|ref|ZP_08316488.1| Putative methyltransferase [Gluconacetobacter sp. SXCC-1]
 gi|329760739|gb|EGG77235.1| Putative methyltransferase [Gluconacetobacter sp. SXCC-1]
          Length = 522

 Score = 53.8 bits (128), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 40/259 (15%), Positives = 77/259 (29%), Gaps = 21/259 (8%)

Query: 124 VNVVVGPQTYYRLPELLERARFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLT 181
            +  V  +    + + +   R G R  V        D  +            + +   + 
Sbjct: 109 ADFQVLGEAEEIMGDFIATWRAGIRHGVFTAAMGKTDVTKSPLPRFDLLKLDQYLHVGVQ 168

Query: 182 IQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVC-EITLLGQNVNAWRGKG 239
              GC   C FC +    G    +++  QV+ E   L   G    +  +  N+       
Sbjct: 169 FSRGCPFSCEFCDIIELYGRVPRTKTNEQVLAELDALYALGYRGHVDFVDDNLI------ 222

Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM----SDCLIKAHGDLDVLMPYLHLPV 295
             G K      L  L   +      +  S    +       L++     +     + + +
Sbjct: 223 --GNKKALRKFLPGLKRWQEERNFPFEFSTEASINLADDADLLRDLAGTNFFA--VFIGI 278

Query: 296 QSGSDRILKSMNRR-HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           +S     L    ++ +T    RQ I+ I      I +++ FIVGF  E        +D +
Sbjct: 279 ESPDTDTLVMTQKKQNTRRSLRQSIETIHRA--GIFVNAGFIVGFDSEKGSIAAGMIDCI 336

Query: 355 DKIGYAQAFSFKYSPRLGT 373
           +                 T
Sbjct: 337 EDTSIPVCMVGLLYALPTT 355


>gi|319405533|emb|CBI79152.1| lipoic acid synthetase [Bartonella sp. AR 15-3]
          Length = 318

 Score = 53.8 bits (128), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 31/194 (15%), Positives = 72/194 (37%), Gaps = 11/194 (5%)

Query: 174 RGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVN 233
           +   +F+ + E C + C FC V    GI  +   ++    A  ++   +  + +   +  
Sbjct: 73  KRHASFMILGEICTRACAFCNV--ATGIPFAVDNNEPERVADAVVQMELKHVVITSVD-- 128

Query: 234 AWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHL 293
             R    DG    F+ ++Y++ +      +   T   R+    L         +  +   
Sbjct: 129 --RDDLSDGGARHFAKVIYAIRQKAPTTTIEVLTPDFRNKDGALEIVVAAKPDVFNH--- 183

Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
            +++   + LK +      +   +++ R++ + P I   S  +VG  GE  ++    MD 
Sbjct: 184 NLETVPSKYLK-VRPGARYFHSIRLLQRVKELDPTIFTKSGIMVGL-GEERNEILQLMDD 241

Query: 354 VDKIGYAQAFSFKY 367
           +           +Y
Sbjct: 242 LRSADVDFMTIGQY 255


>gi|300788491|ref|YP_003768782.1| oxygen-independent coproporphyrinogen III oxidase [Amycolatopsis
           mediterranei U32]
 gi|299798005|gb|ADJ48380.1| oxygen-independent coproporphyrinogen III oxidase [Amycolatopsis
           mediterranei U32]
          Length = 410

 Score = 53.8 bits (128), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 45/211 (21%), Positives = 77/211 (36%), Gaps = 8/211 (3%)

Query: 171 NRKRGVTAFLTIQEGCDKFCTFCVV-PYTRGIEIS-RSLSQVVDEARKLIDNGVCEITL- 227
           +R  GV   +     C   C +C    YT G   S  S    ++  R+ ++     + + 
Sbjct: 31  SRAFGVYVHVPF---CATRCGYCDFNTYTAGELDSGSSPESWLEGLRRELELAARTLVVP 87

Query: 228 -LGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV 286
                V    G            +L ++ ++ GL      T+     S       G  + 
Sbjct: 88  PAADTVFVGGGTPSLLGADGLRSVLDAVRDVFGLAPGAEVTTESNPESTSPEFFAGIREA 147

Query: 287 LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDD 346
               + L +QS +  +LK ++R HT     +     R+   +  ++ D I G PGE  DD
Sbjct: 148 GYTRISLGMQSAAPHVLKILDRVHTPGRPGKAAAEARAAGFE-HVNLDVIYGTPGERADD 206

Query: 347 FRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
            RAT+D V   G     ++      GT  + 
Sbjct: 207 LRATLDAVLAAGVDHVSAYALIVEEGTALAR 237


>gi|294675410|ref|YP_003576026.1| coproporphyrinogen dehydrogenase [Prevotella ruminicola 23]
 gi|294471993|gb|ADE81382.1| coproporphyrinogen dehydrogenase [Prevotella ruminicola 23]
          Length = 454

 Score = 53.8 bits (128), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 34/212 (16%), Positives = 69/212 (32%), Gaps = 8/212 (3%)

Query: 163 LSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC---VVPYTRGIEISRSLSQVVDEARKLID 219
           + +      R+  ++ +L I   C   C +C     P  +   +   +  +  E   L+ 
Sbjct: 35  MMVDQSNEARQNQISFYLHIPF-CRHLCHYCGCNSYPQAKPEVVKAYVEALHKEI-DLVA 92

Query: 220 NGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIK 279
             + +   + Q ++   G           +L   L  I   +                  
Sbjct: 93  KHISDDRQISQ-IHYGGGSPTALPIAMIKELNEHLLSIAPTIERPEIAIECHPGYLDAND 151

Query: 280 AHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGF 339
                        L VQ     +LK +NRR +     +I++ +        ++ DF+ G 
Sbjct: 152 WQQLTACGFTRYSLGVQDLRPEVLKVVNRRESMMPVGEILEMLHES--GATVNLDFLYGL 209

Query: 340 PGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
           P +T D FR T++        +  +F Y+   
Sbjct: 210 PLQTIDSFRNTIEQAAAWRPDRLVTFSYAHLP 241


>gi|124515173|gb|EAY56684.1| Lipoate synthase [Leptospirillum rubarum]
          Length = 316

 Score = 53.8 bits (128), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 37/210 (17%), Positives = 75/210 (35%), Gaps = 12/210 (5%)

Query: 161 ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN 220
           E     + G   ++G   F+ +   C + C FC V    G        + +  +  +   
Sbjct: 62  EEARCPNIGECFRKGTATFMILGNLCTRACPFCDV--EHGKPFPPDPGEPLHLSAAVRRM 119

Query: 221 GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKA 280
            +  + +   +    R    DG    F+ ++ +L +    VR+        D   CL  A
Sbjct: 120 NLRHVVVTSVD----RDDLPDGGSSHFAAVVETLRQNVPSVRIELLVP---DFRGCLPLA 172

Query: 281 HGDLDVLMPYLHLPVQSGSDRIL-KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGF 339
              L   +P + L     +   L + +           ++ R R + P +   S  ++G 
Sbjct: 173 VETLSRALPDV-LNHNIETVPRLYRKVRPGADYSHSLDLLSRFRRMHPGLPTKSGLMLGL 231

Query: 340 PGETDDDFRATMDLVDKIGYAQAFSFKYSP 369
            GETD++  + +  +   G +     +Y P
Sbjct: 232 -GETDEEIASVLRDLRSAGCSMLTLGQYLP 260


>gi|15644025|ref|NP_229074.1| biotin synthase [Thermotoga maritima MSB8]
 gi|4981826|gb|AAD36344.1|AE001782_5 biotin synthetase, putative [Thermotoga maritima MSB8]
          Length = 348

 Score = 53.8 bits (128), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 41/259 (15%), Positives = 79/259 (30%), Gaps = 45/259 (17%)

Query: 138 ELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKR-------GVTAFLTIQEGCDKFC 190
           E LER  F + V+    S+ D+    ++       +R        + A +     C K C
Sbjct: 8   EKLERREFTREVLKEALSINDRGFNEALFKLADEIRRKYVGDEVHIRAIIEFSNVCRKNC 67

Query: 191 TFCVVPYTRGIEISR--SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS 248
            +C +            +  ++V+ AR  +  G   I L         G+         S
Sbjct: 68  LYCGLRRDNKNLKRYRMTPEEIVERARLAVQFGAKTIVLQS-------GEDPYYMPDVIS 120

Query: 249 DLLYSLSE--------IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL--HLPVQSG 298
           D++  + +        +    R  Y           L++      VL   L      ++ 
Sbjct: 121 DIVKEIKKMGVAVTLSLGEWPREYYEKWKEAGADRYLLRHETANPVLHRKLRPDTSFENR 180

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
            + +L      +                      +  +VG PG+T DD    +  + +  
Sbjct: 181 LNCLLTLKELGY-------------------ETGAGSMVGLPGQTIDDLVDDLLFLKEHD 221

Query: 359 YAQAFSFKYSPRLGTPGSN 377
           +       + P   TP +N
Sbjct: 222 FDMVGIGPFIPHPDTPLAN 240


>gi|239623209|ref|ZP_04666240.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239522175|gb|EEQ62041.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 739

 Score = 53.8 bits (128), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 35/173 (20%), Positives = 67/173 (38%), Gaps = 12/173 (6%)

Query: 183 QEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG 242
             GC   C++C+          R L  V +E R  +D  V ++  + +  N         
Sbjct: 307 SRGCPFSCSYCL-SSIDKQVRFRDLELVKEELRYFLDARVPQVKFVDRTFNC-------- 357

Query: 243 EKCTFSDLLYSLSEIK-GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
           +K     +   + E   G+    +  +      + +         L+  L + VQ+ + +
Sbjct: 358 KKSHAMAIWKFIQEHDNGITNFHFEIAADLLGEEEMELLAKMRPGLV-QLEIGVQTTNTQ 416

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
            L+++ R+    E ++I  RI   R ++    D I G P E  D FR + + V
Sbjct: 417 TLEAIRRKTDLQEIQRITARINQGR-NVHQHLDLIAGLPYEGMDSFRRSFNDV 468


>gi|148705793|gb|EDL37740.1| lipoic acid synthetase, isoform CRA_b [Mus musculus]
          Length = 340

 Score = 53.8 bits (128), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 31/186 (16%), Positives = 62/186 (33%), Gaps = 15/186 (8%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVD---EARKLIDNGVCEITLLGQNVNAWRGKGLDG 242
           C + C FC V   R            +    A+ + + G+  + L   +    R    DG
Sbjct: 103 CTRGCRFCSVKTARNP----PPLDANEPDNTAKAIAEWGLDYVVLTSVD----RDDVADG 154

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
                +  +  L E    + +   T    D    L          +      V++  +  
Sbjct: 155 GAEHIAKTVSCLKERNPKILVECLTP---DFRGDLRAVEKVALSGLDVYAHNVETVPELQ 211

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
            K  + R    +  +++   + V+PD+   +  ++G  GETD+   AT+  +        
Sbjct: 212 RKVRDPRANFDQSLRVLRHAKEVQPDVVSKTSIMLGL-GETDEQVYATLKALRAADVDCL 270

Query: 363 FSFKYS 368
              +Y 
Sbjct: 271 TLGQYM 276


>gi|329934574|ref|ZP_08284615.1| radical SAM domain-containing protein [Streptomyces
           griseoaurantiacus M045]
 gi|329305396|gb|EGG49252.1| radical SAM domain-containing protein [Streptomyces
           griseoaurantiacus M045]
          Length = 646

 Score = 53.8 bits (128), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 50/272 (18%), Positives = 87/272 (31%), Gaps = 40/272 (14%)

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
             V+D D     K   + + +  + R       + I  GC + C FC           RS
Sbjct: 240 HTVMDLDEWPYPKQPLVPLAETVHERMS-----VEIFRGCTRGCRFCQAGMITRPVRERS 294

Query: 207 LSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           ++ + +   K +   G  E+ LL     +       G+        Y     +  V L  
Sbjct: 295 ITGIGEMVEKGLQATGFEEVGLLS---LSSADHTEIGDIAKGLADRYE----EDKVGLSL 347

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR---- 321
            ++     +  L             L    + GS+RI K +N+  +  +  + +      
Sbjct: 348 PSTRVDAFNIDLANELTRNGR-RSGLTFAPEGGSERIRKVINKMVSEEDLIRTVATAYGN 406

Query: 322 -IRSVRPDIAISSDFIVGFPGETDDDFRATMDLV-------------DKIGYAQAFSFKY 367
             R V+        F+ G P ETD+D     D+              + I         +
Sbjct: 407 GWRQVK------LYFMCGLPTETDEDVLQIADMATRVIAKGREVSGSNDIRCT-VSIGGF 459

Query: 368 SPRLGTPGSNMLEQVDENVKAERLLCLQKKLR 399
            P+  TP      Q+       RL  L+ K+R
Sbjct: 460 VPKPHTP-FQWAPQLSAEETDARLAKLRDKIR 490


>gi|164688567|ref|ZP_02212595.1| hypothetical protein CLOBAR_02212 [Clostridium bartlettii DSM
           16795]
 gi|164602980|gb|EDQ96445.1| hypothetical protein CLOBAR_02212 [Clostridium bartlettii DSM
           16795]
          Length = 355

 Score = 53.8 bits (128), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 32/200 (16%), Positives = 63/200 (31%), Gaps = 17/200 (8%)

Query: 173 KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNV 232
           K+ +        GC   C FC      G+    +     +   + ++        + ++ 
Sbjct: 2   KKRIIPIFVPHRGCPHDCIFCNQKKITGVSTEVTAQDARNIIEECLET-------IDKDT 54

Query: 233 NAWRGKGLDGEKCTFSDLLYSLSEI------KGLVRLRYTTSHPRDMSDCLIKAHGDLDV 286
           N               +    L  +      KGLV     ++ P  +SD +++     D 
Sbjct: 55  NVEIAFFGGSFTAIEEECQNELLAVAKEYVDKGLVHEIRMSTRPDCISDSILERLKKYD- 113

Query: 287 LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDD 346
               + L VQS   ++L    R H      +    I+    DI +    +VG P +T++ 
Sbjct: 114 -ASIIELGVQSMDAKVLIDSVRGHDIESVIKSAKLIKE--HDIKLGLQMMVGLPSDTEEK 170

Query: 347 FRATMDLVDKIGYAQAFSFK 366
              T      +       + 
Sbjct: 171 CIETARKFISLNPDCVRIYP 190


>gi|319407103|emb|CBI80740.1| lipoic acid synthetase [Bartonella sp. 1-1C]
          Length = 318

 Score = 53.4 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 30/194 (15%), Positives = 72/194 (37%), Gaps = 11/194 (5%)

Query: 174 RGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVN 233
           +   +F+ + E C + C FC V    G+  +   ++    A  ++   +  + +   +  
Sbjct: 73  KRHASFMILGEICTRACAFCNV--ATGVPFAVDDNEPERIADAVVQMELKHVVITSVD-- 128

Query: 234 AWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHL 293
             R    DG    F+ ++Y++ +      +   T   R+    L         +  +   
Sbjct: 129 --RDDLSDGGAQHFAKVIYAIRQKAPTTTIEVLTPDFRNKDGALEIVVAAKPDVFNH--- 183

Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
            +++   + LK +      +   +++ R++ + P I   S  +VG  GE  ++    MD 
Sbjct: 184 NLETVPSKYLK-VRPGARYFHSIRLLQRVKELDPTIFTKSGIMVGL-GEERNEVLQLMDD 241

Query: 354 VDKIGYAQAFSFKY 367
           +           +Y
Sbjct: 242 LRSADVDFMTIGQY 255


>gi|254881409|ref|ZP_05254119.1| coproporphyrinogen III oxidase [Bacteroides sp. 4_3_47FAA]
 gi|319642796|ref|ZP_07997434.1| coproporphyrinogen III oxidase [Bacteroides sp. 3_1_40A]
 gi|254834202|gb|EET14511.1| coproporphyrinogen III oxidase [Bacteroides sp. 4_3_47FAA]
 gi|317385540|gb|EFV66481.1| coproporphyrinogen III oxidase [Bacteroides sp. 3_1_40A]
          Length = 376

 Score = 53.4 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 41/202 (20%), Positives = 73/202 (36%), Gaps = 15/202 (7%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG---LDG 242
           C + C +C    T   E  R  + +     +L    + +  L G+ +      G      
Sbjct: 11  CKRRCIYCDFFSTTQSE--RKTAYIHAVCSEL---EMRKEYLGGETIETIYWGGGTPSQL 65

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPR--DMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300
           +K  F  + Y L +   +      T      D++   I     L      L + +Q+ ++
Sbjct: 66  DKEDFETIFYYLHKNYSISSHPEITLEANPDDLTPDYIAMLRTLP--FNRLSMGIQTFNE 123

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDI-AISSDFIVGFPGETDDDFRATMDLVDKIGY 359
            ILK + RRHTA +  +     R+       IS D + G PGET   ++  +D    +  
Sbjct: 124 SILKVLQRRHTARQAIEAFQNCRAA--GFQNISIDLMYGLPGETLSTWQQDLDQALLLHP 181

Query: 360 AQAFSFKYSPRLGTPGSNMLEQ 381
               ++       T    + EQ
Sbjct: 182 EHLSAYHLIYEEDTVLWKLREQ 203


>gi|189426217|ref|YP_001953394.1| radical SAM protein [Geobacter lovleyi SZ]
 gi|189422476|gb|ACD96874.1| conserved hypothetical radical SAM protein [Geobacter lovleyi SZ]
          Length = 311

 Score = 53.4 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 56/126 (44%), Gaps = 3/126 (2%)

Query: 248 SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL-DVLMPYLHLPVQSGSDRILKSM 306
             LLY  +     +      + P  + D ++    +L      +L L +Q+  D+ L+++
Sbjct: 100 LRLLYEAALADADMVGLIIGTRPDCLPDSVLDMLAELNRRTYLWLELGMQTMHDQTLQAI 159

Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
           NR H    + + ++R +  +  + I +  I+G PGE+ +   A+++ ++++G        
Sbjct: 160 NRGHDHACFVEAVNRCKQKK--LRICAHLILGLPGESREQMLASVEELNRLGVDGVKLHH 217

Query: 367 YSPRLG 372
                G
Sbjct: 218 LHVLKG 223


>gi|15803560|ref|NP_289593.1| hypothetical protein Z4370 [Escherichia coli O157:H7 EDL933]
 gi|12517585|gb|AAG58152.1|AE005531_5 hypothetical protein Z4370 [Escherichia coli O157:H7 str. EDL933]
          Length = 739

 Score = 53.4 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 47/297 (15%), Positives = 97/297 (32%), Gaps = 58/297 (19%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDN--GVCEIT--LLGQNVNA 234
           + I  GC   C+ C +    G  I SRS   +++E   + D   G   +   L G   N 
Sbjct: 380 VNIMRGCFGGCSXCSITEHEGRIIQSRSEDSIINEIEAIRDTVPGFTGVISDLGGPTANM 439

Query: 235 WR----------------------GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
           +                          +D       +L     ++KG+ ++   +    D
Sbjct: 440 YMLRCKSPRAEQTCRRLSCVYPDICPHMDTNHEPTINLYRRARDLKGIKKILIASGVRYD 499

Query: 273 MSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRRH--TAYEYRQIIDRI-RSVRP 327
           ++    +   +L    +  YL +  +   +  L  M +    +   ++++ D   +    
Sbjct: 500 IAVEDPRYIKELATHHVGGYLKIAPEHTEEGPLSKMMKPGMGSYDRFKELFDTYSKQAGK 559

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGY--AQAFSFKYSPRLGT---------PGS 376
           +  +   FI   PG  D+D       + K  +   Q  +F  SP   +         P +
Sbjct: 560 EQYLIPYFISAHPGTRDEDMVNLALWLKKHRFRLDQVQNFYPSPLANSTTMYYTGKNPLA 619

Query: 377 NMLEQ-----VDENVKAERL-LCLQK--------KLREQQVSF-NDACVGQIIEVLI 418
            +  +     V +  K  RL   L +         +R+   +      +G   + L+
Sbjct: 620 KIGYKSEDVFVPKGDKQRRLHKALLRYHDPANWPLIRQALEAMGKKHLIGSRRDCLV 676


>gi|303244911|ref|ZP_07331237.1| Radical SAM domain protein [Methanothermococcus okinawensis IH1]
 gi|302484728|gb|EFL47666.1| Radical SAM domain protein [Methanothermococcus okinawensis IH1]
          Length = 322

 Score = 53.4 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 38/213 (17%), Positives = 78/213 (36%), Gaps = 17/213 (7%)

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLT-IQEGCDKFCTFCVVPYTRGIEISRS 206
           R +   Y  +   E        +       AFL  I  GC + C FC+          R 
Sbjct: 28  RRIKRIYPKKITTEDYPTNQFTHPSGAYGNAFLLEIGRGCPRRCKFCMAKSIYYPPRFRK 87

Query: 207 LSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           L  +     + + +    +I L+  +V         G+     +L   + E    + +  
Sbjct: 88  LDDLKYLVDEGLKHTKTNKIALISPSV---------GDYKHIIELCQYIKEKNENISISP 138

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
           ++     + D L+K        +  L +  ++GS+R+ + + +  +  +    +D  ++ 
Sbjct: 139 SSLRADTIKDELLKILN-----LKTLTIAPEAGSERLREYIKKDISYEDISNALDIAKNN 193

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           + D  I   ++VG P ET +D    + L   I 
Sbjct: 194 KID-KIKLYYMVGLPTETKEDIEEIITLSKNIK 225


>gi|300689867|ref|YP_003750862.1| coproporphyrinogen III oxidase [Ralstonia solanacearum PSI07]
 gi|299076927|emb|CBJ49540.1| Coproporphyrinogen III oxidase [Ralstonia solanacearum PSI07]
          Length = 490

 Score = 53.4 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 37/193 (19%), Positives = 70/193 (36%), Gaps = 14/193 (7%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C   C +C        + +RS   +   AR++       I  L Q      G    G   
Sbjct: 87  CANLCYYCGCNKVVTKDHARSARYIRALAREM-AMIARHIGPLRQATQLHWG----GGTP 141

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL-------MPYLHLPVQSG 298
           TF      + ++    R  +  +   ++S  L   H     L            L +Q  
Sbjct: 142 TF-LSHDEMRDVMAATREHFALTSDAEISVELDPRHASDAALEVLAGLGFNRASLGIQDF 200

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
              + ++++R  +  + R+++D  R +    +IS D I G P +    F AT+D V ++ 
Sbjct: 201 DADVQRAIHRIQSVEQTRRVVDSARRLGFQ-SISFDLIYGLPHQHTATFNATLDRVLEMA 259

Query: 359 YAQAFSFKYSPRL 371
             +   + Y+   
Sbjct: 260 PERLSVYSYAHLP 272


>gi|281423133|ref|ZP_06254046.1| radical SAM domain protein [Prevotella oris F0302]
 gi|281402469|gb|EFB33300.1| radical SAM domain protein [Prevotella oris F0302]
          Length = 699

 Score = 53.4 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 54/325 (16%), Positives = 102/325 (31%), Gaps = 69/325 (21%)

Query: 108 CVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVD 167
           C+   + E    R      +           LL++      VV+  Y      E  +I D
Sbjct: 247 CLQNKKAEAENYRH-----IEEESNKIHAQRLLQQVGNMYAVVNPPYPTMTTEELDAIFD 301

Query: 168 GGYNRKRGVT-------AFLTI------QEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDE 213
             Y R            A+  I       +GC   C FC +   +G  +  RS   +V+E
Sbjct: 302 LPYTRLPHPKYKGKKLPAYEMIKFSINMHQGCFGGCAFCTISAHQGKFVACRSKKSIVNE 361

Query: 214 ARKLIDN----------GVCEITLLGQN---------------VNAWRGKGLDGEKCTFS 248
           A+K+             G     + G +               +N      LD +     
Sbjct: 362 AKKITQMPDFKGYLSDLGGPSANMYGMHGRNLKACERCKRPSCINPQICPNLDTDHTKLL 421

Query: 249 DLLYSLSEIKGLVRLRY-----------------TTSHPRDMSDCLIKAHGDLDVLMPYL 291
           D+ +++  + G+ +                    T +  R  +  LI+     + +   L
Sbjct: 422 DIYHAVDALPGIKKSFIGSGVRYDLLLHKGKDEKTNASTRQYTRELIE-----NHVSGRL 476

Query: 292 HLPVQSGSDRILKSMNRRHTAYEY--RQIIDRI-RSVRPDIAISSDFIVGFPGETDDDFR 348
            +  +   + +LK M +   +  Y  ++I D I +       I   FI   PG  ++D  
Sbjct: 477 KIAPEHTQESVLKLMRKPSFSQFYEFKRIFDHINKEAGLKQQIIPYFISSHPGCHEEDMA 536

Query: 349 ATMDLVDKIGYAQAFSFKYSPRLGT 373
               +   + +       ++P   T
Sbjct: 537 ELAVITKDLDFHLEQVQDFTPTPMT 561


>gi|212712934|ref|ZP_03321062.1| hypothetical protein PROVALCAL_04032 [Providencia alcalifaciens DSM
           30120]
 gi|212684412|gb|EEB43940.1| hypothetical protein PROVALCAL_04032 [Providencia alcalifaciens DSM
           30120]
          Length = 321

 Score = 53.4 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 30/183 (16%), Positives = 67/183 (36%), Gaps = 12/183 (6%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V    G   +   ++    A+ + D  +  + +   +    R    DG   
Sbjct: 94  CTRRCPFCDV--AHGRPNAPDANEPEKLAQTIKDMALRYVVITSVD----RDDLRDGGAQ 147

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAH-GDLDVLMPYLHLPVQSGSDRILK 304
            F+D + ++ E    +++       R   D  ++        +  +    V     RI +
Sbjct: 148 HFADCISAIREKSPSIKIETLVPDFRGRMDRALEILTATPPDVFNHNLENV----PRIYR 203

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
            +          +++++ +   P+I   S  +VG  GET+++    M  + + G      
Sbjct: 204 QVRPGANYEWSLKLLEKFKEAHPEIPTKSGLMVGL-GETNEEIIEVMRDLRRHGVTMLTL 262

Query: 365 FKY 367
            +Y
Sbjct: 263 GQY 265


>gi|86608370|ref|YP_477132.1| coproporphyrinogen III oxidase [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86556912|gb|ABD01869.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 405

 Score = 53.4 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 36/232 (15%), Positives = 73/232 (31%), Gaps = 13/232 (5%)

Query: 155 SVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEA 214
           S +      +             A+L I   C + C +C   +  G+   + +   V   
Sbjct: 7   SHDPTPTGTAPQPCRDQVDWPEAAYLHIPF-CRQRCHYCD--FATGLGTRKLMETYVQML 63

Query: 215 RKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMS 274
            + I        L G +          G   +    +  L  I   +R R       ++S
Sbjct: 64  CREIGGAYRYRHLAG-DPRPLTSIFFGGGTPSL-LTVEQLGRILTQLRERIPFHPDCEIS 121

Query: 275 DCLIKAHGDLDVLMPY-------LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
                     + L  Y       + L VQ+    +L +  R H   E  + +  +++   
Sbjct: 122 LEANPGTLTREQLAGYRELGVNRISLGVQAFQPELLAACGRLHGVEEVYEAVADLQAAGF 181

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
           +   + D I   P +T + ++ ++  V +I       +  +   GT    M 
Sbjct: 182 E-NFNLDLIFELPYQTLEHWQQSLRAVLEINPTHVSVYDLTIEPGTRFGRMY 232


>gi|15613715|ref|NP_242018.1| coproporphyrinogen III oxidase [Bacillus halodurans C-125]
 gi|10173768|dbj|BAB04871.1| BH1152 [Bacillus halodurans C-125]
          Length = 498

 Score = 53.4 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 34/217 (15%), Positives = 78/217 (35%), Gaps = 17/217 (7%)

Query: 162 RLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNG 221
           +L+++       RGV+ ++ I   C   C +C  P       + S+   +      I+  
Sbjct: 156 QLAVLPDLDELDRGVSVYIGIPF-CPTKCAYCTFPAYAINGKNGSVEAFLAGLHYEIEAT 214

Query: 222 VC----------EITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPR 271
                        +   G    +   + +D    T  D   ++++++    L      P 
Sbjct: 215 GKWLTDHQIPVTTVYFGGGTPTSITAEQMDALYETLYDSFPAMNQVR---ELTVEAGRPD 271

Query: 272 DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAI 331
            ++   I+        +  + +  QS  +  L+++ R H+  E  +     R +  +  I
Sbjct: 272 TITPEKIEVLKK--WNVDRISINPQSFENETLQAIGRHHSVEETIEKYKMARDLGME-NI 328

Query: 332 SSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
           + D I+G PGE   +   +++  +K+          S
Sbjct: 329 NMDLIIGLPGEGPKEMARSLEETEKLMPESLTVHTLS 365


>gi|89091919|ref|ZP_01164874.1| coproporphyrinogen III oxidase [Oceanospirillum sp. MED92]
 gi|89083654|gb|EAR62871.1| coproporphyrinogen III oxidase [Oceanospirillum sp. MED92]
          Length = 380

 Score = 53.4 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 31/204 (15%), Positives = 73/204 (35%), Gaps = 8/204 (3%)

Query: 186 CDKFCTFCVV--PYTRGIEISRSLSQVVDEARKLIDNGVCEIT-LLGQNVNAWRGKGLDG 242
           C + C +C       RG          ++   + + + +        Q++    G     
Sbjct: 17  CIRKCPYCDFNSHAQRGEL---PEQAYIECLLEDLRSELHFAQGRTIQSIFIGGGTPSLF 73

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
           +  +F  LL  ++ I  + R    T      +    K  G  D  +  L + +QS ++  
Sbjct: 74  QADSFKRLLLGINAIIPIERDAEITLEANPGTFEQEKFIGYKDAGINRLSIGIQSFNNNH 133

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           L+++ R H++ E  +     R + P   ++ D + G P +++ D  A +     +     
Sbjct: 134 LQALGRIHSSDEAVRAATLAREIFP--RLNLDLMHGLPSQSETDAIADLQQAIDLDPDHL 191

Query: 363 FSFKYSPRLGTPGSNMLEQVDENV 386
             ++ +    T   +    +  + 
Sbjct: 192 SWYQLTIEPNTEFYSKSPSLPVDE 215


>gi|257089709|ref|ZP_05584070.1| coproporphyrinogen III oxidase [Enterococcus faecalis CH188]
 gi|256998521|gb|EEU85041.1| coproporphyrinogen III oxidase [Enterococcus faecalis CH188]
 gi|315578402|gb|EFU90593.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Enterococcus faecalis TX0630]
          Length = 382

 Score = 53.4 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 48/254 (18%), Positives = 97/254 (38%), Gaps = 28/254 (11%)

Query: 177 TAFLTIQEGCDKFCTFCVV--PYTRGIEISRSLSQVVDEARKLI----DNGVCEITLLGQ 230
           +A++ I   C+  C +C     +  G  +   +  ++ E +       +  +  I + G 
Sbjct: 5   SAYIHIPF-CEHICYYCDFNKVFLEGQPVDEYIQSLLKEIQLTQALYPEQEMKTIYIGGG 63

Query: 231 NVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT-SHPRDMSDCLIKAHGDLDVLMP 289
              +   K LD        +   L       R  +T  ++P D++   ++   +    + 
Sbjct: 64  TPTSLSAKQLD---VLLKGVREQL---TFDDRNEFTVEANPGDLTQEKLQVMKNYG--VN 115

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI-RSVRPDIAISSDFIVGFPGETDDDFR 348
            L + VQ+  DR+LK + R+HTA +  + +  + +    +++I  D I   PG+T + FR
Sbjct: 116 RLSMGVQTFDDRLLKKIGRKHTAADVYETMKFLEKENFTNVSI--DLIYALPGQTLESFR 173

Query: 349 ATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE----QVDENVKA-----ERLLCLQKKLR 399
             +     +       +       T   N +     Q+ E         E +  ++KK R
Sbjct: 174 DALTRALALDLPHYSLYSLILENKTMFMNWVRQGRLQLPEEEIEAQMFDETIEAMEKKGR 233

Query: 400 EQQVSFNDACVGQI 413
            Q    N A  G+ 
Sbjct: 234 HQYEVSNFALTGKE 247


>gi|237737990|ref|ZP_04568471.1| oxygen-independent coproporphyrinogen III oxidase [Fusobacterium
           mortiferum ATCC 9817]
 gi|229419870|gb|EEO34917.1| oxygen-independent coproporphyrinogen III oxidase [Fusobacterium
           mortiferum ATCC 9817]
          Length = 411

 Score = 53.4 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 32/191 (16%), Positives = 67/191 (35%), Gaps = 9/191 (4%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           CDK C+FC +      ++S +L   V+   K  +    +  + G+ +      G      
Sbjct: 52  CDKICSFCNM---NRKQVSNNLDDYVEYLCKEFEKYGSKKYVQGKEITTIFFGGGTPTIY 108

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY----LHLPVQSGSDR 301
               L   LS +     +        + +   +     L ++  Y    L + +Q+ SDR
Sbjct: 109 KEYQLEKILSTLTNSFNISSNCEFTFETTLHNL-TLKKLAIMEKYGVNRLSIGIQTFSDR 167

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
             K +NR +   E  + I  ++     + I  D I  +  E+ ++      +  ++    
Sbjct: 168 GRKLLNRTYEQKEIIKRIKELKKNFKGL-ICIDIIYNYLDESLEEIENDAKIATELEVDS 226

Query: 362 AFSFKYSPRLG 372
              +      G
Sbjct: 227 ISFYSLMIHEG 237


>gi|297584659|ref|YP_003700439.1| oxygen-independent coproporphyrinogen III oxidase [Bacillus
           selenitireducens MLS10]
 gi|297143116|gb|ADH99873.1| oxygen-independent coproporphyrinogen III oxidase [Bacillus
           selenitireducens MLS10]
          Length = 382

 Score = 53.4 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 37/243 (15%), Positives = 86/243 (35%), Gaps = 38/243 (15%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVD--------EARKLIDNGVCEITLLGQNVNAWRG 237
           C++ C +C          S+ + + V+         A +  +    +   +G        
Sbjct: 12  CEQICHYCDFNKFY--LKSQPVDEYVEDLITEMGIYADEHDEKEPVQSVYIG-------- 61

Query: 238 KGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLI-------KAHGDLDVLMPY 290
               G   + S+    L+++   VR  +  S   + +              G  +  +  
Sbjct: 62  ---GGTPTSMSE--KQLAKVIHDVRELFPLSESCEFTVEANPGSCDASMMKGLYNAGVNR 116

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA-ISSDFIVGFPGETDDDFRA 349
           L + VQ+  + +L ++NR H   + ++ +D  R     I  +S D + G PG+T + ++ 
Sbjct: 117 LSIGVQTFDETLLSAINRDHEPGDAQKTVDMAREA--GITNLSIDLMFGLPGQTMEQWKQ 174

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ-----VDENVKAERLLCLQKKLREQQVS 404
           T+     +      ++       T    M ++      DE+++A+    L    +     
Sbjct: 175 TLKAALSLPITHISAYSLKIEPKTVFYQMQKKRQLRLPDEDLEADMFEELVANAKRTGFQ 234

Query: 405 FND 407
             +
Sbjct: 235 HYE 237


>gi|124004002|ref|ZP_01688849.1| lipoic acid synthetase [Microscilla marina ATCC 23134]
 gi|123990581|gb|EAY30061.1| lipoic acid synthetase [Microscilla marina ATCC 23134]
          Length = 298

 Score = 53.4 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 29/218 (13%), Positives = 72/218 (33%), Gaps = 13/218 (5%)

Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209
           +  D+ +          + G     G    + + + C + CTFC V   R   +     +
Sbjct: 43  IVEDHGLHTICRSGKCPNIGECWGSGTATLMILGDVCTRACTFCSVKTGRPDTV--DWKE 100

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSH 269
            +  A+ +   G+    +   +    R    DG    +   + ++ ++     +      
Sbjct: 101 PMRVAKSVQLMGLKHAVITSVD----RDDLKDGGASVWQATIQAIKKLNPETTMEVLIPD 156

Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329
            +   + +         ++ +    V+  +  + +  N  +       ++  +      I
Sbjct: 157 FKGKPENIQLVIDAKPEVISHNMETVRRLTREVRR--NSNYDRS--LSVLKFVAEA--GI 210

Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
              S  +VG  GET+++   TMD +   G       +Y
Sbjct: 211 RAKSGVMVGL-GETEEEVLETMDDLRANGVEVLTIGQY 247


>gi|56205713|emb|CAI24675.1| CDK5 regulatory subunit associated protein 1-like 1 [Mus
          musculus]
 gi|74197951|dbj|BAE43325.1| unnamed protein product [Mus musculus]
 gi|148700455|gb|EDL32402.1| CDK5 regulatory subunit associated protein 1-like 1, isoform
          CRA_b [Mus musculus]
          Length = 136

 Score = 53.4 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 9/43 (20%), Positives = 19/43 (44%), Gaps = 2/43 (4%)

Query: 16 QIVDQCIVP--QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERV 56
          +      +P  Q+ +++++GC  N  D   M     + GY+  
Sbjct: 52 RPPSDSTIPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKIT 94


>gi|78355583|ref|YP_387032.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           G20]
 gi|78217988|gb|ABB37337.1| Putative oxygen-independent coproporphyrinogen III oxidase
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           G20]
          Length = 578

 Score = 53.4 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 40/200 (20%), Positives = 71/200 (35%), Gaps = 20/200 (10%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVV-DEARKLIDNGVCEITLLGQNVN--AWRGKGLDG 242
           C   C +C          S  ++    D  ++ +D  + EI L G  +   A       G
Sbjct: 194 CRSKCGYCAFH-------SVPVAAAGPDGMQQYLDALLREIALWGDRLGNRAVHTVFFGG 246

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCL----IKAHGDLDVLMPY----LHLP 294
              +      +++ I   +R  +   +  ++S       + A+G LD L       L L 
Sbjct: 247 GTPSL-LPEKAVAVIMDRLRRAFDIQNGAEISFEANPESVSAYGYLDTLFKCGINRLSLG 305

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           VQS ++  L+ + R H A E        R       I+ D I G P +    +   +  V
Sbjct: 306 VQSLNNDGLRVLGRPHKAREAVNAFRLARQAGFG-NINLDMIWGLPSQRLKLWLDELKAV 364

Query: 355 DKIGYAQAFSFKYSPRLGTP 374
            ++       +  +   GTP
Sbjct: 365 TELKPDHLSCYGLTLEEGTP 384


>gi|50121932|ref|YP_051099.1| coproporphyrinogen III oxidase [Pectobacterium atrosepticum
           SCRI1043]
 gi|49612458|emb|CAG75908.1| putative coproporphyrinogen oxidase [Pectobacterium atrosepticum
           SCRI1043]
          Length = 437

 Score = 53.4 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 38/218 (17%), Positives = 71/218 (32%), Gaps = 23/218 (10%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C   CTFC   + +                + +   +        + +A       G   
Sbjct: 63  CATHCTFCG--FYQNKLR----DDSTATYTRYLLQELAMEADSPLHQSAPIHAVYFGGGT 116

Query: 246 TFSDLLYSLSEIKGLVRLRYTTS---------HPRDMSDCLIKAHGDLDVLMPYLHLPVQ 296
             +     LS+I   +R     +            D  D  I A   LD       + +Q
Sbjct: 117 PTALAADELSQIIRAIRTSLPLAPDCEITVEGRAMDFDDERIDAC--LDAGANRFSIGIQ 174

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
           +   RI + M R     +  + ++R+   R   A+  D + G PG+T + +R  + +V  
Sbjct: 175 TFDTRIRQRMARTSDKQQSIRFLERLCG-RDRAAVVCDLMFGLPGQTPEIWREDLAIVSD 233

Query: 357 IGYAQAFSFKYSPRLGTPGSNMLEQ----VDENVKAER 390
           +       +  +    TP +   E     +  +V A R
Sbjct: 234 LPLDGVDLYALNLLPTTPLAKAAENQRVALP-DVVARR 270


>gi|37523505|ref|NP_926882.1| hypothetical protein gll3936 [Gloeobacter violaceus PCC 7421]
 gi|35214509|dbj|BAC91877.1| gll3936 [Gloeobacter violaceus PCC 7421]
          Length = 532

 Score = 53.4 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 51/318 (16%), Positives = 104/318 (32%), Gaps = 32/318 (10%)

Query: 63  DLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSP 122
           DL++L+   ++    +   + + + +              V V G    +  EE L    
Sbjct: 67  DLVMLSAMLVQ---KDDFQALIRKAKQ---------RGKPVAVGGPYPTSVPEEALEA-- 112

Query: 123 IVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTA-FLT 181
             + +V  +    +P+ +              +V+    +  I            A  + 
Sbjct: 113 GADYLVLDEGEMTIPQFVAAIEKQLPRGVFRSTVKPDVSQTPIPRFDLLELGAYYAMCVQ 172

Query: 182 IQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL 240
              GC   C FC +    G    +++ +Q++ E   L   G      +  +         
Sbjct: 173 FSRGCPFMCEFCDITSLYGRVPRTKTPAQMLAELDCLYRLGWRGQVFMVDD-------NF 225

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMP----YLHLPVQ 296
            G K    +LL  L+ I  +   RY      + S  L +    LD+++      + L ++
Sbjct: 226 IGNKRRVGELL--LALIPWMQARRYPFGFFTEASLNLAQEGELLDLMVRAGFWSVFLGIE 283

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSV-RPDIAISSDFIVGFPGETDDDFRATMDLVD 355
           +     L    +     +   +++  R++ R  + I + FIVGF GE           V+
Sbjct: 284 TPDTESLVLTKKLQNTRQ--SLVEACRAINRAGLEIMAGFIVGFDGEKAGAGERIRAFVE 341

Query: 356 KIGYAQAFSFKYSPRLGT 373
                +A          T
Sbjct: 342 VTAIPRAMIGLLGALPHT 359


>gi|332023932|gb|EGI64150.1| Lipoyl synthase, mitochondrial [Acromyrmex echinatior]
          Length = 247

 Score = 53.4 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 28/183 (15%), Positives = 62/183 (33%), Gaps = 10/183 (5%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V   R       + + ++ A  +    +  I L   +    R    DG   
Sbjct: 7   CTRGCRFCSVKTARKPP-PLDVEEPINTASAVAAWNLDYIVLTSVD----RDDLKDGGAN 61

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
             +  +  + +   ++ +       R   +C+         +  +    V+  +  + + 
Sbjct: 62  HIASTVKEIKKRSNIL-VECLVPDFRGDENCIATIVNSNLDVFAHNIETVERLTPFV-RD 119

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           M  R+       ++   + + PD+   S  ++G  GETD +   TM  +           
Sbjct: 120 MRARYRQS--LAVLKAAKKLNPDLITKSSIMLGL-GETDQEVEQTMQDLKDANVDAITLG 176

Query: 366 KYS 368
           +Y 
Sbjct: 177 QYM 179


>gi|258542616|ref|YP_003188049.1| methyltransferase [Acetobacter pasteurianus IFO 3283-01]
 gi|256633694|dbj|BAH99669.1| methyltransferase [Acetobacter pasteurianus IFO 3283-01]
 gi|256636753|dbj|BAI02722.1| methyltransferase [Acetobacter pasteurianus IFO 3283-03]
 gi|256639806|dbj|BAI05768.1| methyltransferase [Acetobacter pasteurianus IFO 3283-07]
 gi|256642862|dbj|BAI08817.1| methyltransferase [Acetobacter pasteurianus IFO 3283-22]
 gi|256645917|dbj|BAI11865.1| methyltransferase [Acetobacter pasteurianus IFO 3283-26]
 gi|256648970|dbj|BAI14911.1| methyltransferase [Acetobacter pasteurianus IFO 3283-32]
 gi|256651957|dbj|BAI17891.1| methyltransferase [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256655014|dbj|BAI20941.1| methyltransferase [Acetobacter pasteurianus IFO 3283-12]
          Length = 535

 Score = 53.4 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 32/201 (15%), Positives = 66/201 (32%), Gaps = 19/201 (9%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVC-EITLLGQNVNAWRG 237
           +    GC   C FC +    G    +++ +QV+ E   L   G    +  +  N+     
Sbjct: 176 IQFSRGCPFSCEFCDIIELYGRVPRTKTNAQVLAELDALYALGYRGHVDFVDDNLI---- 231

Query: 238 KGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM----SDCLIKAHGDLDVLMPYLHL 293
               G K      L  L   +   +  +  S    +       L++   + +     + +
Sbjct: 232 ----GNKKALKKFLPDLKLWQNKKKFPFEFSTEASINLADDTDLLRGLAETNFFA--VFI 285

Query: 294 PVQSGSDRILKSMNRR-HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352
            ++S     L    ++ +T    ++ I +I      I +++ FIVGF  E        +D
Sbjct: 286 GIESPDTDTLVMTQKKQNTRRSLQESITKIHEA--GIFVNAGFIVGFDSEKGSVAAGMVD 343

Query: 353 LVDKIGYAQAFSFKYSPRLGT 373
            ++                 T
Sbjct: 344 CIEDTAIPVCMVGLLYALPTT 364


>gi|242373091|ref|ZP_04818665.1| lipoyl synthase [Staphylococcus epidermidis M23864:W1]
 gi|242349245|gb|EES40846.1| lipoyl synthase [Staphylococcus epidermidis M23864:W1]
          Length = 305

 Score = 53.4 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 40/256 (15%), Positives = 89/256 (34%), Gaps = 20/256 (7%)

Query: 112 AEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYN 171
            + EEILR+   + + +     Y   + + R +         ++V ++ +  +I +    
Sbjct: 3   TKNEEILRKPDWLKIKLNTNENYTGLKKMMREKN-------LHTVCEEAKCPNIHECWGA 55

Query: 172 RKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQN 231
           R+     F+ +   C + C FC V      E+   L++    A  +    +  + +    
Sbjct: 56  RR--TATFMILGAVCTRACRFCAVKTGLPNEL--DLNEPERVAESVELMNLKHVVITAV- 110

Query: 232 VNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL 291
               R    D     +++ +  +        +    S      + L         ++ + 
Sbjct: 111 ---ARDDLRDQGSNVYAETVRKVRARNPFTTIEILPSDMGGDYEALETLMASRPDILNHN 167

Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351
              V+  +      +  R T     + + R + ++PDI   S  +VG  GET ++   TM
Sbjct: 168 IETVRRLTP----RVRARATYDRTLEFLRRSKELQPDIPTKSSLMVGL-GETMEEIYETM 222

Query: 352 DLVDKIGYAQAFSFKY 367
           D +           +Y
Sbjct: 223 DDLRANDVDILTIGQY 238


>gi|207722199|ref|YP_002252636.1| oxygen-independent coproporphyrinogen III oxidase protein
           [Ralstonia solanacearum MolK2]
 gi|206587374|emb|CAQ17957.1| oxygen-independent coproporphyrinogen III oxidase protein
           [Ralstonia solanacearum MolK2]
          Length = 491

 Score = 53.4 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 39/193 (20%), Positives = 70/193 (36%), Gaps = 14/193 (7%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C   C +C        + +RS   +   AR++       I  L Q      G    G   
Sbjct: 85  CANLCYYCGCNKVVTKDHTRSARYIRALAREM-AMIARHIGPLRQATQLHWG----GGTP 139

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL-------MPYLHLPVQSG 298
           TF      + ++    R  +  +   ++S  L   H   D L            L +Q  
Sbjct: 140 TF-LSHDEMRDVMAATRKHFALTSDAEISVELDPRHAGDDTLAVLADLGFNRASLGIQDF 198

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
              +  +++R  +  + R ++D  R +    +IS D I G P +  D F AT+D V ++ 
Sbjct: 199 DADVQHAIHRVQSVEQTRHVVDSARRLGFQ-SISFDLIYGLPHQHIDTFNATLDRVLEMA 257

Query: 359 YAQAFSFKYSPRL 371
             +   + Y+   
Sbjct: 258 PDRLSVYSYAHLP 270


>gi|315641132|ref|ZP_07896211.1| coproporphyrinogen dehydrogenase [Enterococcus italicus DSM 15952]
 gi|315483140|gb|EFU73657.1| coproporphyrinogen dehydrogenase [Enterococcus italicus DSM 15952]
          Length = 385

 Score = 53.4 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 39/188 (20%), Positives = 72/188 (38%), Gaps = 15/188 (7%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C+  C +C             + + VD     I+ G    T    +       G      
Sbjct: 16  CEHICYYCDFNKVFLEGQ--PVDEYVDRLLDEIEWGTKNKT---TSFPTIYIGGGTPTSL 70

Query: 246 TFSDLLYSLSEIKGLVRL-----RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300
           T + L   L+ I   V L         ++P D+++  +    +    +  + + VQS  D
Sbjct: 71  TATQLDKLLAGITERVSLADTKEFTIEANPGDLTEEKLAIIQNYG--VNRVSMGVQSFDD 128

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
           R+LK + R+H+A +  + +  +   +    +S D I   PG+T D+FR T+     + + 
Sbjct: 129 RLLKKIGRKHSAQDVTETLHLL-EAKGFSNVSIDLIYALPGQTLDNFRQTLT--QALTFD 185

Query: 361 QAFSFKYS 368
                 YS
Sbjct: 186 LPHYSLYS 193


>gi|13277380|ref|NP_077791.1| lipoyl synthase, mitochondrial precursor [Mus musculus]
 gi|23821835|sp|Q99M04|LIAS_MOUSE RecName: Full=Lipoyl synthase, mitochondrial; AltName: Full=Lipoate
           synthase; Short=LS; Short=Lip-syn; Short=mLIP1; AltName:
           Full=Lipoic acid synthase; Flags: Precursor
 gi|12805345|gb|AAH02141.1| Lipoic acid synthetase [Mus musculus]
 gi|14669826|dbj|BAB62009.1| lipoic acid synthase [Mus musculus]
 gi|26339544|dbj|BAC33443.1| unnamed protein product [Mus musculus]
 gi|26340282|dbj|BAC33804.1| unnamed protein product [Mus musculus]
 gi|26346042|dbj|BAC36672.1| unnamed protein product [Mus musculus]
 gi|148705792|gb|EDL37739.1| lipoic acid synthetase, isoform CRA_a [Mus musculus]
          Length = 373

 Score = 53.4 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 31/186 (16%), Positives = 62/186 (33%), Gaps = 15/186 (8%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVD---EARKLIDNGVCEITLLGQNVNAWRGKGLDG 242
           C + C FC V   R            +    A+ + + G+  + L   +    R    DG
Sbjct: 136 CTRGCRFCSVKTARNP----PPLDANEPDNTAKAIAEWGLDYVVLTSVD----RDDVADG 187

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
                +  +  L E    + +   T    D    L          +      V++  +  
Sbjct: 188 GAEHIAKTVSCLKERNPKILVECLTP---DFRGDLRAVEKVALSGLDVYAHNVETVPELQ 244

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
            K  + R    +  +++   + V+PD+   +  ++G  GETD+   AT+  +        
Sbjct: 245 RKVRDPRANFDQSLRVLRHAKEVQPDVVSKTSIMLGL-GETDEQVYATLKALRAADVDCL 303

Query: 363 FSFKYS 368
              +Y 
Sbjct: 304 TLGQYM 309


>gi|213852341|ref|ZP_03381873.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
          Length = 305

 Score = 53.4 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 40/248 (16%), Positives = 87/248 (35%), Gaps = 20/248 (8%)

Query: 173 KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEI--TLLGQ 230
           +R ++ ++ I   C K C FC        +  +   Q +D   + I +         + Q
Sbjct: 50  ERPLSLYVHIPF-CHKLCYFCGCNKIVTRQQHK-ADQYLDALEQEIRHRAPLFADRHVSQ 107

Query: 231 NVNAWRGKGLDGEKCTFSDLLYSLSE-----IKGLVRLRYTTSHPRDMSDCLIKAHGDLD 285
            ++   G      K   S L+  L E         + +      PR++   ++       
Sbjct: 108 -LHWGGGTPTYLNKAQISRLMTLLRENFHFNTDAEISIEV---DPREIELDVLDHLRAEG 163

Query: 286 VLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS-DFIVGFPGETD 344
                L + VQ  +  + + +NR         +++  R +      ++ D I G P +T 
Sbjct: 164 --FNRLSMGVQDFNKEVQRLVNREQDEEFIFALLNHARDI--GFTSTNIDLIYGLPKQTP 219

Query: 345 DDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQV 403
           + F  T+  V ++   +   F Y+       +   ++  D     ++L  LQ+ +     
Sbjct: 220 ESFAFTLKRVTELNPDRLSVFNYAHLPTLFAAQRKIKDADLPSAQQKLDILQETIVSLTQ 279

Query: 404 SFNDACVG 411
           +     +G
Sbjct: 280 AGYQ-FIG 286


>gi|68535671|ref|YP_250376.1| coproporphyrinogen III oxidase [Corynebacterium jeikeium K411]
 gi|68263270|emb|CAI36758.1| oxygen-independent coproporphyrinogen III oxidase [Corynebacterium
           jeikeium K411]
          Length = 409

 Score = 53.4 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 53/122 (43%), Gaps = 6/122 (4%)

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
           + L +QS    +LK + R+HT     +     +    +  I+ D I G P ETDDD R T
Sbjct: 127 ISLGMQSAMGHVLKVLERQHTPGRPIEATREAKRAGFE-HINLDVIYGTPTETDDDLRRT 185

Query: 351 MDLVDKIGYAQAFSFKYSPRLGTPGSNM-----LEQVDENVKAERLLCLQKKLREQQVSF 405
           +D V +       ++      GT  +       L   DE+  A+R   +  +LR+   ++
Sbjct: 186 LDAVLEADVDHVSAYSLIVEDGTAMARKVRRGELPAPDEDTLADRYDAIDARLRDAGFNW 245

Query: 406 ND 407
            +
Sbjct: 246 YE 247


>gi|323132345|gb|ADX19775.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
          Length = 485

 Score = 53.4 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 40/248 (16%), Positives = 87/248 (35%), Gaps = 20/248 (8%)

Query: 173 KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEI--TLLGQ 230
           +R ++ ++ I   C K C FC        +  +   Q +D   + I +         + Q
Sbjct: 78  ERPLSLYVHIPF-CHKLCYFCGCNKIVTRQQHK-ADQYLDALEQEIRHRAPLFADRHVSQ 135

Query: 231 NVNAWRGKGLDGEKCTFSDLLYSLSE-----IKGLVRLRYTTSHPRDMSDCLIKAHGDLD 285
            ++   G      K   S L+  L E         + +      PR++   ++       
Sbjct: 136 -LHWGGGTPTYLNKAQISRLMTLLRENFHFNTDAEISIEV---DPREIELDVLDHLRAEG 191

Query: 286 VLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS-DFIVGFPGETD 344
                L + VQ  +  + + +NR         +++  R +      ++ D I G P +T 
Sbjct: 192 --FNRLSMGVQDFNKEVQRLVNREQDEEFIFALLNHARDI--GFTSTNIDLIYGLPKQTP 247

Query: 345 DDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQV 403
           + F  T+  V ++   +   F Y+       +   ++  D     ++L  LQ+ +     
Sbjct: 248 ESFAFTLKRVTELNPDRLSVFNYAHLPTLFAAQRKIKDADLPSAQQKLDILQETIVSLTQ 307

Query: 404 SFNDACVG 411
           +     +G
Sbjct: 308 AGYQ-FIG 314


>gi|296270562|ref|YP_003653194.1| radical SAM domain-containing protein [Thermobispora bispora DSM
           43833]
 gi|296093349|gb|ADG89301.1| Radical SAM domain protein [Thermobispora bispora DSM 43833]
          Length = 486

 Score = 53.4 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 53/328 (16%), Positives = 99/328 (30%), Gaps = 35/328 (10%)

Query: 54  ERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAE 113
           ++++  D+ DL+V+                    R  + +         V + G    + 
Sbjct: 52  QKIDLADEPDLVVI------------QVYITSAKRAYELADHYRAKGAYVCLGGLHVTSL 99

Query: 114 GEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIV--DGGYN 171
            EE  R +    +  GP      P  L   R G      D S E     L  V  D    
Sbjct: 100 PEEAARHAD--TIFCGPGE-DTWPRFLADFRAGHPAPRYD-STERTLATLPPVRRDLIDR 155

Query: 172 RKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQN 231
           R+  V   + +  GC   C FC          S     V     ++       +  L  +
Sbjct: 156 RRYLVPNSIVVSRGCPHVCDFCYKEAFFKGGKSFYTQAVDAALAEIDRLPGRHLYFLDDH 215

Query: 232 VNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR-YTTSHPRDMSDCLIKAHGDLDVLMPY 290
           +      G         D +       G+ RL     +    +   L++    ++  +  
Sbjct: 216 L-----FGNPRFAAALFDGMR------GMGRLWQAAGTVQSVLRPGLLE--KAVEAGLRS 262

Query: 291 LHLPVQSGSDRILKSMNRRHTA-YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           L +  ++ S   L    +      +Y   I R+      + ++  F+ G   +    F  
Sbjct: 263 LFVGFETLSSANLTEQRKWQNIGRDYEAAIRRLHE--HGVMVNGSFVFGMDEDDTSVFDR 320

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
           T++   + G   A     +P  GT   +
Sbjct: 321 TVEWAIEQGIETATFHILTPYPGTRLYD 348


>gi|269794655|ref|YP_003314110.1| coproporphyrinogen III oxidase, anaerobic [Sanguibacter keddieii
           DSM 10542]
 gi|269096840|gb|ACZ21276.1| coproporphyrinogen III oxidase, anaerobic [Sanguibacter keddieii
           DSM 10542]
          Length = 418

 Score = 53.4 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 46/254 (18%), Positives = 85/254 (33%), Gaps = 44/254 (17%)

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC------VVPYTRGIEIS 204
           D D + +D      +  G  +R+ GV   +     C   C +C            G   S
Sbjct: 7   DGDPAPDDGTLPTWVASGAADRRFGVYMHVPF---CTVRCGYCDFNTYTASELGGGASQS 63

Query: 205 R----SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
                ++S++    R +   G+    +            + G   T       L+ +   
Sbjct: 64  AYATTAVSEIEMAGRLMDAAGLPRREVSTV--------FVGGGTPTL-LPARDLATMLAA 114

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMP------------YLHLPVQSGSDRILKSMNR 308
           VR  +  +   +++        + D + P             +   +QS    +L ++ R
Sbjct: 115 VRSTWGLADDVEVTTE-----ANPDSVTPESLAVLADAGFTRVSFGMQSAVPSVLATLER 169

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
            H       ++   R V   + +S D I G PGET DD+R +++     G     ++   
Sbjct: 170 THDPRRIPDVVRWARDV--GLDVSLDLIYGTPGETLDDWRTSVESALATGVDHVSAYALV 227

Query: 369 PRLGTPGSNMLEQV 382
              GT    M  QV
Sbjct: 228 VEQGT---KMAAQV 238


>gi|317050143|ref|YP_004117791.1| oxygen-independent coproporphyrinogen III oxidase [Pantoea sp.
           At-9b]
 gi|316951760|gb|ADU71235.1| oxygen-independent coproporphyrinogen III oxidase [Pantoea sp.
           At-9b]
          Length = 457

 Score = 53.4 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 44/250 (17%), Positives = 86/250 (34%), Gaps = 24/250 (9%)

Query: 173 KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNV 232
           +R ++ ++ I   C + C FC         ++R L +       L         L     
Sbjct: 50  ERPLSLYVHIPF-CHRLCYFC----GCNKIVTRQLHKADRYLDVLEQEIRQRAPLFAGRS 104

Query: 233 NAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL----- 287
                 G  G   TF      +S + GL+R  +T +   +MS  +     +L+++     
Sbjct: 105 VTQLHWG--GGTPTF-LNQQQVSRLVGLLRSHFTFAEDVEMSIEVDPREIELEMIDHLRS 161

Query: 288 --MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI-AISSDFIVGFPGETD 344
                L + VQ  +  + + +NR         ++ R R       ++S D I G P +T 
Sbjct: 162 QGFNRLSMGVQDFNKAVQEKVNRVQDEAMIFALVQRAREQ--GFRSVSLDLIYGLPLQTP 219

Query: 345 DDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM---LEQVDENVKAERLLCLQKKLREQ 401
           + F  T+  V  +   +   F Y+       +       ++    +   L  LQ+ +   
Sbjct: 220 ESFAFTLQRVIALNPDRLSVFNYAHLPTLFAAQRKIKDAELPGATQK--LAILQQTIATL 277

Query: 402 QVSFNDACVG 411
                   +G
Sbjct: 278 TGEGYQ-FIG 286


>gi|119896476|ref|YP_931689.1| lipoyl synthase [Azoarcus sp. BH72]
 gi|171704436|sp|A1K1U7|LIPA_AZOSB RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|119668889|emb|CAL92802.1| lipoic acid synthetase [Azoarcus sp. BH72]
          Length = 315

 Score = 53.4 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 35/216 (16%), Positives = 72/216 (33%), Gaps = 12/216 (5%)

Query: 153 DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVD 212
           ++ +    E  S  +      +G   F+ + + C + C FC V + R   ++   ++  D
Sbjct: 55  EHKLHTVCEEASCPNIHECFGKGTATFMIMGDICTRRCPFCDVGHGRPEPLN--PNEPTD 112

Query: 213 EARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
            AR +    +  + +   +    R    DG    F D +           +       R 
Sbjct: 113 LARTIAAMRLNYVVITSVD----RDDLRDGGAQHFVDCIRETRAASPSTTIEVLVPDFRG 168

Query: 273 MSDCLIKAHGDLDV-LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAI 331
             +  ++        +M +    V     R+ K            +++   ++  PD+  
Sbjct: 169 RMEIALEIFNQAPPDVMNHNMETV----PRLYKQARPGADYAYSLRLLKEFKAGHPDVLT 224

Query: 332 SSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
            S  +VG  GETDD+    M  +           +Y
Sbjct: 225 KSGLMVGL-GETDDEILDVMRDLRAHDVDMLTIGQY 259


>gi|311031612|ref|ZP_07709702.1| coproporphyrinogen III oxidase [Bacillus sp. m3-13]
          Length = 379

 Score = 53.4 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 38/196 (19%), Positives = 68/196 (34%), Gaps = 8/196 (4%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR---GKGLDG 242
           C+  C +C          ++ +   ++     + N +       Q++       G     
Sbjct: 12  CEHICHYCDFNKVF--LKNQPVDAYLEFMDVEMKNTID--RFPTQHLETIFVGGGTPTAL 67

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
            +   S LL S+     +V     T         L K     +  +  L   VQS +D +
Sbjct: 68  NQKQLSYLLESIQRNFDVVPDIEYTFEANPGDLSLEKLRLLKEGGVNRLSFGVQSFNDDL 127

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           LK + R H   +  + I+  R    D  IS D I   P +T +DF+ T+     +G    
Sbjct: 128 LKRIGRSHRKTDVFKSIEHAREAGFD-NISVDLIYSLPDQTVEDFQDTLHTAFSLGLEHY 186

Query: 363 FSFKYSPRLGTPGSNM 378
            ++       T   N+
Sbjct: 187 SAYSLIIEPKTVFYNL 202


>gi|303232086|ref|ZP_07318789.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Veillonella atypica ACS-049-V-Sch6]
 gi|302513192|gb|EFL55231.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Veillonella atypica ACS-049-V-Sch6]
          Length = 392

 Score = 53.4 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 42/227 (18%), Positives = 82/227 (36%), Gaps = 26/227 (11%)

Query: 167 DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEIT 226
           D    R  G+   +     C + C +C  P  + +E         +     +   V E+T
Sbjct: 7   DLFVQRDMGIYIHIPF---CKQKCIYCDFPAYQNLE---------EYYDTYLYALVQEMT 54

Query: 227 LLGQNVNAWRGKGLD----GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDC-----L 277
           + G      R K +D    G        L  L +I   ++  Y  S     +       +
Sbjct: 55  MFGDAYPKSRTKLVDTVYLGGGTPTELSLLQLEQILNTIKTTYNVSPDCQFTIESNPGEV 114

Query: 278 IKAHGD--LDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR-IRSVRPDIAISSD 334
            +A+      +    +   VQ+ +D+ L S++R H   +    +    +    DI I  D
Sbjct: 115 DRAYLKGLHKLGFSRISFGVQTFNDKSLVSLHRSHNREDAIHAVQWAFKEGFQDINI--D 172

Query: 335 FIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
            I G P +T D+    +D+V  +      ++      GT   +++++
Sbjct: 173 LIYGLPNQTTDEINKNLDIVSTLPINHISTYGLQVEPGTRLYHLVDK 219


>gi|224369589|ref|YP_002603753.1| lipoyl synthase [Desulfobacterium autotrophicum HRM2]
 gi|223692306|gb|ACN15589.1| LipA [Desulfobacterium autotrophicum HRM2]
          Length = 288

 Score = 53.4 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 33/205 (16%), Positives = 71/205 (34%), Gaps = 16/205 (7%)

Query: 166 VDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEI 225
            +  +        F+ + + C + C +C V +  G  ++   ++    AR  +  G+  +
Sbjct: 44  PNIWHCFANHTATFMILGDLCTRNCRYCNVSH--GKPLAPDATEPESVARAALALGLTYV 101

Query: 226 TLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE-IKGLVRLRYTTSHPRDMSDCLIKAHGDL 284
            +        R    DG    F   + +L E +  L+ +             L       
Sbjct: 102 VITSVT----RDDLEDGGAAHFVRTIEALRETLPDLIGVEVLIPDFGGSESSLRTVMDAR 157

Query: 285 DVLMPYL--HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGE 342
             ++ +    +P    + R     +R        +++ R   + P I + S  +VG  GE
Sbjct: 158 PEVLNHNIETVPSLYPTARPEAIYHRS------LELLARAHQINPAIPVKSGLMVGL-GE 210

Query: 343 TDDDFRATMDLVDKIGYAQAFSFKY 367
           T ++   TM  +   G +     +Y
Sbjct: 211 TREELLETMKDLVAHGCSILTIGQY 235


>gi|194014953|ref|ZP_03053570.1| oxygen-independent coproporphyrinogen III oxidase 2
           (Coproporphyrinogenase) (Coprogen oxidase) [Bacillus
           pumilus ATCC 7061]
 gi|194013979|gb|EDW23544.1| oxygen-independent coproporphyrinogen III oxidase 2
           (Coproporphyrinogenase) (Coprogen oxidase) [Bacillus
           pumilus ATCC 7061]
          Length = 499

 Score = 53.4 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 33/224 (14%), Positives = 77/224 (34%), Gaps = 11/224 (4%)

Query: 152 TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVV 211
            +   E    +L  +   Y+ ++ V+ ++ I   C   C +C  P       +  +   +
Sbjct: 148 INLMQEIVDRQLQAIPDLYDLQQEVSIYIGIPF-CPTKCAYCTFPAYAIKGQAGRVGTFL 206

Query: 212 DEARKLIDNGVCEITLLGQNVNAWRGKG-------LDGEKCTFSDLLYSLSEIKGLVRLR 264
                 +      +   G  V      G        +     + ++  S  ++K +  + 
Sbjct: 207 FGLHYEMQKIGTWLKEHGIKVTTVYFGGGTPTSITAEEMDLLYEEMYRSFPDVKHIREVT 266

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
                P  +S   ++      +    + +  QS  +  LK++ R H+  E  +     R 
Sbjct: 267 VEAGRPDTISPDKLEVLNRYHI--DRISINPQSYENETLKAIGRHHSVEETIEKYHLSRQ 324

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
              +  I+ D I+G PGE   +F+ ++   +++          S
Sbjct: 325 YGMN-NINMDLIIGLPGEGLKEFQHSLQQTEELKPESLTVHTLS 367


>gi|163868062|ref|YP_001609266.1| lipoyl synthase [Bartonella tribocorum CIP 105476]
 gi|189046595|sp|A9IS79|LIPA_BART1 RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|161017713|emb|CAK01271.1| lipoic acid synthetase [Bartonella tribocorum CIP 105476]
          Length = 320

 Score = 53.4 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 31/194 (15%), Positives = 69/194 (35%), Gaps = 11/194 (5%)

Query: 174 RGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVN 233
           +   +F+ + E C + C FC V    GI ++    +    A  +    +  + +   +  
Sbjct: 73  QRHASFMILGEICTRACAFCNV--ATGIPLAVDDDEPERVADAVARMELKHVVITSVD-- 128

Query: 234 AWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHL 293
             R    DG    F+ ++Y++        +   T   R     L         +  +   
Sbjct: 129 --RDDLADGGAEHFAKVIYAIRRKAPKTTIEVLTPDFRHKDGALEVVVAAKPDVFNH--- 183

Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
            +++   + LK +      +   +++ R++ + P I   S  +VG  GE  ++    MD 
Sbjct: 184 NLETVPSKYLK-VRPGARYFHSIRLLQRVKELDPTIFTKSGIMVGL-GEERNEILQLMDD 241

Query: 354 VDKIGYAQAFSFKY 367
           +           +Y
Sbjct: 242 LRTADVDFMTIGQY 255


>gi|94268847|ref|ZP_01291301.1| Putative oxygen-independent coproporphyrinogen III oxidase [delta
           proteobacterium MLMS-1]
 gi|93451447|gb|EAT02289.1| Putative oxygen-independent coproporphyrinogen III oxidase [delta
           proteobacterium MLMS-1]
          Length = 404

 Score = 53.4 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 32/202 (15%), Positives = 68/202 (33%), Gaps = 12/202 (5%)

Query: 186 CDKFCTFCVVPYT--RGIEISRSLSQVVDEARKLID-----NGVCEITLLGQNVNAWRGK 238
           C + C +C       R   +S  L  +  +AR+L +             +G         
Sbjct: 35  CHRKCDYCAFVSLPCRRPPVSY-LQALRRQARQLAELPWSRRQTFGTIFIGGGTPTSYPA 93

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
                       L+      G         +P  ++   ++        +  L + +QS 
Sbjct: 94  AQLAALLAELRSLFCCRGAAGDEPEITVECNPGTITLEGLRQLRAAG--VNRLSIGIQSF 151

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           +D +L ++ R H        +  +R    +   + D + G PG++  DF+A +    +  
Sbjct: 152 ADHLLTAVGRGHDRAAALAALKLVRQAGFE-DYNLDLMYGLPGQSIADFKADLLTALEAE 210

Query: 359 YAQAFSFKYSPRLGTP-GSNML 379
                 ++ +P  GTP  + + 
Sbjct: 211 PTHLALYQLTPEAGTPLAARLE 232


>gi|315608019|ref|ZP_07883012.1| radical SAM domain protein [Prevotella buccae ATCC 33574]
 gi|315250488|gb|EFU30484.1| radical SAM domain protein [Prevotella buccae ATCC 33574]
          Length = 685

 Score = 53.4 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 48/296 (16%), Positives = 86/296 (29%), Gaps = 68/296 (22%)

Query: 139 LLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTA-------------FLTIQEG 185
           LL+       VV+  Y      E  +  D  Y R                    + I +G
Sbjct: 258 LLQAVDGKYAVVNPPYPTLSTEELDATFDLPYTRLPHPKYRGKTIPAYEMIKFSVNIHQG 317

Query: 186 CDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLI----------DNGVCEITLLGQ---- 230
           C   C FC +   +G  +  RS   +V E  K+I          D G     + G     
Sbjct: 318 CFGGCAFCTISAHQGKFVTCRSKESIVKEVEKVIHMPDFKGYLSDLGGPSANMYGMAGRN 377

Query: 231 -----------NVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT------------- 266
                       +N      LD +     D+  ++  + G+ +                 
Sbjct: 378 RKACEHCKRPSCINPQICPNLDTDHTALLDIYRAVDRLPGIKKSFIGSGVRYDLLLYKGK 437

Query: 267 ----TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR-----HTAYEYRQ 317
                +  R+ +  LI        +   L +  +  S  +L  M +          +   
Sbjct: 438 DEHANASAREYTRELI-----TRHVSGRLKVAPEHTSGAVLNLMRKPPFEQFGAFKQIFD 492

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
            I++  ++R  I     FI   PG  ++D         K+ +       ++P   T
Sbjct: 493 RINKEENLRQQIIPY--FISSHPGCKEEDMAELAVKTKKLDFHLEQVQDFTPTPMT 546


>gi|312879933|ref|ZP_07739733.1| oxygen-independent coproporphyrinogen III oxidase [Aminomonas
           paucivorans DSM 12260]
 gi|310783224|gb|EFQ23622.1| oxygen-independent coproporphyrinogen III oxidase [Aminomonas
           paucivorans DSM 12260]
          Length = 376

 Score = 53.4 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 40/200 (20%), Positives = 61/200 (30%), Gaps = 11/200 (5%)

Query: 186 CDKFCTFCVVPYTRGIEIS--RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
           C   C +C  P     E    R L  +  E R      +    L    V    G      
Sbjct: 19  CTAKCPYCAFPSAPPGEGDEDRYLEGIGREVRFWASR-LKRRGLSSLYVGG--GTPTRLS 75

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRD--MSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
              +  L+  L E          T       +S   ++  G    L   + L VQS  D 
Sbjct: 76  PSGWERLIRFLEEAFSFRSSTEITVEANPESLSPEHLEIWGRWRPLR--VSLGVQSFRDE 133

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
            L ++ R H     R+   RIR     I +  D + G P +T   F  ++     +    
Sbjct: 134 ELVALGRLHDGARAREAAMRIRRQ--GIPLGLDLMFGIPRQTLRTFAESLREALSLDPEH 191

Query: 362 AFSFKYSPRLGTPGSNMLEQ 381
              ++     GTP      +
Sbjct: 192 LSLYQLMLEEGTPFGESPPE 211


>gi|307109955|gb|EFN58192.1| hypothetical protein CHLNCDRAFT_20212 [Chlorella variabilis]
          Length = 766

 Score = 53.4 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 55/299 (18%), Positives = 98/299 (32%), Gaps = 32/299 (10%)

Query: 97  EGGDLLVVVAGCVAQAEGE------EILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150
           +G + LV +  C+ Q   E       + R +  V  V  PQ Y             +  V
Sbjct: 198 DGEEALVEIGQCLRQCRAEGLDRDATLYRLATSVEGVYVPQFYDAPGGWGGAVFPIREGV 257

Query: 151 DTDYS----VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
                      D F+++ +V         +T  + I+ GC + C FC             
Sbjct: 258 PERIQRRVCAPDPFQQIGLVPFVDTVHNRLT--VEIRRGCTRGCRFCQPGMLTRPARDVE 315

Query: 207 LSQVVDEARKLID-NGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
            S+VVD     +   G  E +LL  + + +      G +        +++          
Sbjct: 316 PSRVVDAVEHGMRLTGYNEFSLLSLSCSDYLSLPSVGIQIKNRLKDENVA--------LS 367

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
             S   D  D  I            L    ++G+ R+   +N+  T  E  + +      
Sbjct: 368 LPSQRVDRFDDDIAHIVTNSAKRSGLTFAPEAGTQRLRDIINKGLTNEELLRGVKTAWDK 427

Query: 326 RPDIAISSDFIVGFPGETDDD---FRATMDLV-DKIGYAQAF------SFKYSPRLGTP 374
                I   F++G PGETD D      T++ +  +    +           ++P+  TP
Sbjct: 428 GWR-QIKLYFMIGLPGETDADVMGIAETVEWLQRECRQGKFHLAVNVTISNFTPKPHTP 485


>gi|237714571|ref|ZP_04545052.1| Fe-S oxidoreductase family 2 [Bacteroides sp. D1]
 gi|229445340|gb|EEO51131.1| Fe-S oxidoreductase family 2 [Bacteroides sp. D1]
          Length = 530

 Score = 53.4 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 53/378 (14%), Positives = 112/378 (29%), Gaps = 56/378 (14%)

Query: 68  NTCHIREKAAEKVYSFL---------GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEIL 118
           NT  +  +        +          ++ ++ +          V++ G     + E  L
Sbjct: 28  NTGSVVNQIYRHQPDIIAATNWLFNHEQLLHIVSRAKALLPHCCVILGGPEFLGDNEAFL 87

Query: 119 RRSPIVNVVVGPQTYYRLPELLERA-----------------RFGKRVVDTDYSVEDKFE 161
            ++  V+ V   +     P  L+                     G+   +    V +  E
Sbjct: 88  YKNKFVSGVFRGEGEEVFPLWLKVWNQPRKEWKSITGLCYLNESGEYQDNGLARVMNFSE 147

Query: 162 RLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNG 221
            +      +         L    GC   C FC V        + SL  + +    + ++G
Sbjct: 148 LVPPEKSRFFNWSKPFVQLETTRGCFNTCAFC-VSGGEKPVRTLSLEAIKERLDVIHEHG 206

Query: 222 VCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAH 281
           +  + +L +  N    +  +       +L     +I       +   HP  +SD L +  
Sbjct: 207 IKNVRVLDRTFNYNNKRAKE-----LLNLFREYPDI-----CFHLEIHPALLSDELKQEL 256

Query: 282 GDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFP- 340
             L   + +L   +QS  + +L+   R          +  + S+  ++   +D I G P 
Sbjct: 257 ATLPKGLLHLEAGIQSLRENVLEQSRRIGKLSNALAGLHYLCSLE-NMETHADLIAGLPL 315

Query: 341 ---GETDDDFRATMDL-VDKIGYAQAFSFKYSPRLGTPGSNMLEQV--------DENVKA 388
               E  DD R   +    +I              GT      +++           V  
Sbjct: 316 YHLSEIFDDVRTLTEYGAGEIQLESLKL-----LPGTEMRRRADELGIQYSPLPPYEVLQ 370

Query: 389 ERLLCLQKKLREQQVSFN 406
            R + + +      +S  
Sbjct: 371 TREITVDELQTAHYMSRL 388


>gi|237734840|ref|ZP_04565321.1| coproporphyrinogen III oxidase [Mollicutes bacterium D7]
 gi|229382168|gb|EEO32259.1| coproporphyrinogen III oxidase [Coprobacillus sp. D7]
          Length = 374

 Score = 53.4 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 39/228 (17%), Positives = 86/228 (37%), Gaps = 17/228 (7%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARK-----LIDNGVCEITLLGQNVNAWRGKGL 240
           C++ C +C        E        +   +       I   +  I + G   ++   + L
Sbjct: 23  CEQICAYCDFCKVFYNE--HQADDYLAVLKHELQALNITEPLKTIYIGGGTPSSLNDEQL 80

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300
           +        +   +S     V +             ++K  G     +  L + V++ +D
Sbjct: 81  E---WLMDIIKPYISSETKEVSIEVNPESIDYYKLDILKRGG-----VSRLSIGVETFND 132

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
            +LK +NR+HT+ +  +IID  R +  +  IS D + G P +T  D +  +  V ++   
Sbjct: 133 ILLKKINRQHTSIQVERIIDYARKIGFN-NISIDLMYGLPNQTITDIKNDLAKVRQLPIE 191

Query: 361 QAFSFKYSPRLGTPGSNM-LEQVDENVKAERLLCLQKKLREQQVSFND 407
               +       T   N+  + +DE V+++    +++ L +      +
Sbjct: 192 HISYYSLILEDHTVLKNLNYQPLDEEVESKITQLIEESLEQIDFHKYE 239


>gi|213024817|ref|ZP_03339264.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
          Length = 323

 Score = 53.4 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 40/248 (16%), Positives = 87/248 (35%), Gaps = 20/248 (8%)

Query: 173 KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEI--TLLGQ 230
           +R ++ ++ I   C K C FC        +  +   Q +D   + I +         + Q
Sbjct: 9   ERPLSLYVHIPF-CHKLCYFCGCNKIVTRQQHK-ADQYLDALEQEIRHRAPLFADRHVSQ 66

Query: 231 NVNAWRGKGLDGEKCTFSDLLYSLSE-----IKGLVRLRYTTSHPRDMSDCLIKAHGDLD 285
            ++   G      K   S L+  L E         + +      PR++   ++       
Sbjct: 67  -LHWGGGTPTYLNKAQISRLMTLLRENFHFNTDAEISIEV---DPREIELDVLDHLRAEG 122

Query: 286 VLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS-DFIVGFPGETD 344
                L + VQ  +  + + +NR         +++  R +      ++ D I G P +T 
Sbjct: 123 --FNRLSMGVQDFNKEVQRLVNREQDEEFIFALLNHARDI--GFTSTNIDLIYGLPKQTP 178

Query: 345 DDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQV 403
           + F  T+  V ++   +   F Y+       +   ++  D     ++L  LQ+ +     
Sbjct: 179 ESFAFTLKRVTELNPDRLSVFNYAHLPTLFAAQRKIKDADLPSAQQKLDILQETIVSLTQ 238

Query: 404 SFNDACVG 411
           +     +G
Sbjct: 239 AGYQ-FIG 245


>gi|18311539|ref|NP_563473.1| radical SAM protein family protein [Clostridium perfringens str.
           13]
 gi|18146223|dbj|BAB82263.1| conserved hypothetical protein [Clostridium perfringens str. 13]
          Length = 311

 Score = 53.4 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 32/193 (16%), Positives = 66/193 (34%), Gaps = 17/193 (8%)

Query: 188 KFCTFCVVPYT--RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
             CTFC    +     + + S+    D  +++++    E   +         +       
Sbjct: 48  GGCTFCSSKGSGDYAGQRTLSIGTQFDNVKEMMNKKWKEGKYIA------YFQAYTNTYA 101

Query: 246 TFSDLLYSLSEI---KGLVRLRYT--TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300
              +L     E    +G+V L          +    L++       +  ++ L +Q+  D
Sbjct: 102 PVEELRRKYEEAINKEGVVALAIGTRPDCINEEVLDLLEEM--NKKVYTWVELGLQTIHD 159

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
              +S NR +    + + ++ ++S    I      I G PGE+ +    T+D V + G  
Sbjct: 160 DTARSFNRGYDLEVFDKAMEGLKSR--GIDTVVHCIFGLPGESKEQMLETVDYVSRCGAQ 217

Query: 361 QAFSFKYSPRLGT 373
                      GT
Sbjct: 218 GIKLHLLHLMEGT 230


>gi|251795314|ref|YP_003010045.1| hypothetical protein Pjdr2_1282 [Paenibacillus sp. JDR-2]
 gi|247542940|gb|ACS99958.1| conserved hypothetical protein [Paenibacillus sp. JDR-2]
          Length = 321

 Score = 53.4 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 32/190 (16%), Positives = 61/190 (32%), Gaps = 9/190 (4%)

Query: 188 KFCTFCVVPYTRGIEISRSLSQV--VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
             CTFC    +     SR    V   ++ R        E   +G                
Sbjct: 57  GGCTFCSARGSGDFAGSRRDDLVTQFNKIRDRQHQKWPEANYIG---YFQAYTNTYAPVE 113

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL-DVLMPYLHLPVQSGSDRILK 304
              +    + +  G+V L    + P  + D ++    +L +    ++ + +Q+  +   +
Sbjct: 114 ELREYYEVILQQPGVVGLSI-ATRPDCLPDDVVDYLAELNERTYLWVEMGLQTIHESTSE 172

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
            +NR H    Y   + R+R     I + +  I G P E+      T   V ++       
Sbjct: 173 LINRAHDTACYLDAVRRLRER--GIRVCTHVIYGLPQESHAMMLETGRAVAEMDVQGIKI 230

Query: 365 FKYSPRLGTP 374
                   TP
Sbjct: 231 HLLHLMRKTP 240


>gi|168819601|ref|ZP_02831601.1| radical SAM protein, TIGR01212 family [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|205343489|gb|EDZ30253.1| radical SAM protein, TIGR01212 family [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|320087775|emb|CBY97539.1| Elongator complex protein 3 [Salmonella enterica subsp. enterica
           serovar Weltevreden str. 2007-60-3289-1]
          Length = 309

 Score = 53.4 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 41/235 (17%), Positives = 75/235 (31%), Gaps = 32/235 (13%)

Query: 181 TIQEGCDKFCTFCVV-PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
           TI  G    CTFC V  +    +   S+++ +     L++     +       + +    
Sbjct: 39  TIGRG---GCTFCNVASFADEAQQHHSIAEQLAHQAHLVNRAKRYLAYFQAYTSTFAEVQ 95

Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
           +     +      SL+ I GL  +             L+  + D    + +L L +Q+  
Sbjct: 96  V---LRSMYQQAVSLASIVGLC-VGTRPDCVPQAVVDLLCEYKDQGYEV-WLELGLQTAH 150

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
           D+ L+ +NR H    Y++     R     + + +  IVG PGE   +   TM+ V + G 
Sbjct: 151 DKTLRRINRGHDFACYQRTTRIARER--GLKVCAHLIVGLPGEGQAECLQTMERVVETGV 208

Query: 360 AQAFSFKYSPRLG---------------------TPGSNMLEQVDENVKAERLLC 393
                       G                          M+      V   R+  
Sbjct: 209 DGIKLHPLHIVKGSTMAKAWEAGRLNGIELDDYTLTAGEMIRHTPPEVIYHRISA 263


>gi|52787114|ref|YP_092943.1| lipoyl synthase [Bacillus licheniformis ATCC 14580]
 gi|319647645|ref|ZP_08001863.1| lipoyl synthase [Bacillus sp. BT1B_CT2]
 gi|52349616|gb|AAU42250.1| LipA [Bacillus licheniformis ATCC 14580]
 gi|317389986|gb|EFV70795.1| lipoyl synthase [Bacillus sp. BT1B_CT2]
          Length = 303

 Score = 53.4 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 34/217 (15%), Positives = 76/217 (35%), Gaps = 13/217 (5%)

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210
           +  ++V ++ +  +I +    R+     F+ +   C + C FC V      E+   L++ 
Sbjct: 39  NNLHTVCEEAKCPNIHECWAVRR--TATFMILGSVCTRACRFCAVKTGLPTEL--DLNEP 94

Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270
              A  +    +    +        R    DG    F++ + ++        +    S  
Sbjct: 95  ERVADSVSIMNLKHAVITAV----ARDDLKDGGAGVFAETVRAVRRKSPFTTIEVLPSDM 150

Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330
               + L         ++ +    V+  +      +  R T     + + R + ++PDI 
Sbjct: 151 GGDYNNLKTLMDTRPDILNHNIETVRRLTP----RVRARATYERSLEFLRRAKEMQPDIP 206

Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
             S  ++G  GET ++   TMD +           +Y
Sbjct: 207 TKSSIMIGL-GETKEEIIETMDDLLANNVDIMAIGQY 242


>gi|168702591|ref|ZP_02734868.1| probable MiaB protein-putative tRNA-thiotransferase [Gemmata
           obscuriglobus UQM 2246]
          Length = 44

 Score = 53.4 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 21/44 (47%), Positives = 32/44 (72%)

Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
           +++SSDFIVGF G+T++ F+ +M+LV +     +F FKYS R G
Sbjct: 1   MSVSSDFIVGFCGDTEESFQKSMELVREARVKNSFIFKYSERGG 44


>gi|78185581|ref|YP_378015.1| lipoyl synthase [Synechococcus sp. CC9902]
 gi|78169875|gb|ABB26972.1| Lipoate synthase [Synechococcus sp. CC9902]
          Length = 296

 Score = 53.4 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 68/220 (30%), Gaps = 11/220 (5%)

Query: 153 DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVD 212
           D ++    +  S  + G     G   FL +  GC + C +C +            S+   
Sbjct: 33  DLNLNTVCQEASCPNIGECFAGGTATFLIMGPGCTRACPYCDI-DFDKSVRELDPSEPER 91

Query: 213 EARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
               +   G+  + +   N    R   LDG    F   +  + +   L  +         
Sbjct: 92  LGEAVARLGLSHVVITSVN----RDDLLDGGASQFVACIEQVKQRSPLTTIELLIPDLCG 147

Query: 273 MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAIS 332
             D L         ++ +    V     R+ K    +        ++ R+R   P +   
Sbjct: 148 NWDALATVMAAAPHVLNHNIETV----PRMYKKARPQGIYERSLDLLQRVRKGWPKVYTK 203

Query: 333 SDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY-SPRL 371
           S  + G  GETDD+    +  +           +Y SP  
Sbjct: 204 SGLMAGL-GETDDEVIGVLKDLRDHQVDIVTIGQYLSPGP 242


>gi|304559828|gb|ADM42492.1| Lipoate synthase [Edwardsiella tarda FL6-60]
          Length = 311

 Score = 53.4 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 30/183 (16%), Positives = 62/183 (33%), Gaps = 12/183 (6%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V    G  ++   ++    A+ + D G+  + +   +    R    DG   
Sbjct: 84  CTRRCPFCDV--AHGRPLAPDANEPEKLAQTIADMGLRYVVVTSVD----RDDLRDGGAQ 137

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL-K 304
            F+D + ++      +R+       R   D  +    D    +          +   L +
Sbjct: 138 HFADCIRAIRAKSPQIRIETLVPDFRGRMDRALALLQDNPPDV----FNHNLENIPRLYR 193

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
            +          +++ + +   P I   S  +VG  GET+ +    M  +   G      
Sbjct: 194 QVRPGANYEWSLRLLQQFKQQHPQIPTKSGLMVGL-GETNQEIIEVMRDLRAHGVTMLTL 252

Query: 365 FKY 367
            +Y
Sbjct: 253 GQY 255


>gi|294792130|ref|ZP_06757278.1| putative Fe-S oxidoreductase [Veillonella sp. 6_1_27]
 gi|294457360|gb|EFG25722.1| putative Fe-S oxidoreductase [Veillonella sp. 6_1_27]
          Length = 475

 Score = 53.4 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 41/212 (19%), Positives = 79/212 (37%), Gaps = 22/212 (10%)

Query: 186 CDKFCTFCVVPY-----TRGIEI-----SRSLSQVVDEARKLIDNGVCEITLLGQNVNAW 235
           CD  C +C  PY       G        +R +  +                L    +   
Sbjct: 162 CDTRCVYCSFPYGLYQDYAGKSQFLRALNRDIEDMKSIV--------DSYNLTVDTLYMG 213

Query: 236 RGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPV 295
            G     E   F  +L  LS +       +T    R  S   +K    L++ +  + +  
Sbjct: 214 GGTPTVLEDEDFHQVLKLLSILVPEGH-EFTVEAGRPDSVNPVKLQSMLELGVNRISINP 272

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
           Q+  D IL+ + R H+A++  +++  +++    +A++ DFI G P +T  +    MD V 
Sbjct: 273 QTMQDDILRRIGRGHSAWDIDELLQYVKNNT-SLAVNMDFIAGLPNQTMSNMIENMDYVC 331

Query: 356 KIGYAQAFSFKYSPRLGTPGSN--MLEQVDEN 385
           +           + + G+P  +  M + + E 
Sbjct: 332 QNLPENVTIHTLALKRGSPLYDLHMEDDIPEE 363


>gi|224367276|ref|YP_002601439.1| BioB1 [Desulfobacterium autotrophicum HRM2]
 gi|223689992|gb|ACN13275.1| BioB1 [Desulfobacterium autotrophicum HRM2]
          Length = 348

 Score = 53.4 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 27/207 (13%), Positives = 66/207 (31%), Gaps = 25/207 (12%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQ--VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
           C   C +C +           + +  +++  +   D G+    +          +G +  
Sbjct: 59  CVSNCLYCGIRRENRKVQRYRIKENRLLEVIQAGFDRGLRTFVI----------QGGEDP 108

Query: 244 KCTFSDLLYSLSEIKGLVR-----LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
                 +   +  IK   R             R+    +++A  D         +  ++ 
Sbjct: 109 CYPVERICRLVEAIKQKTRGEAAVTLSCGMRSREEYGEMVQAGADR------YLIRFETS 162

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
             ++   +    T  +  Q ++  R+        S F++G PGET +     + L  ++ 
Sbjct: 163 DPKLHACLRDGKTLKDRLQALEDTRTA--GFQTGSGFMLGLPGETPEVRLENILLCQRLE 220

Query: 359 YAQAFSFKYSPRLGTPGSNMLEQVDEN 385
                   + P   TP  ++ +   E+
Sbjct: 221 LDMVGIGPFIPHPDTPLKHVKQHPIED 247


>gi|257060356|ref|YP_003138244.1| lipoyl synthase [Cyanothece sp. PCC 8802]
 gi|256590522|gb|ACV01409.1| lipoic acid synthetase [Cyanothece sp. PCC 8802]
          Length = 300

 Score = 53.4 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 38/248 (15%), Positives = 81/248 (32%), Gaps = 15/248 (6%)

Query: 130 PQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRG------VTAFLTIQ 183
            Q    LP  L+R+      + T   +  +    +I + G    RG         FL + 
Sbjct: 7   TQDLTPLPRWLKRSIGKASEISTVQRIIKQRNIHTICEEGRCPNRGECYAQKTATFLLMG 66

Query: 184 EGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
             C + C FC V             +    A  +   G+  + L        R    DG 
Sbjct: 67  PTCTRSCAFCQVDKGHAPM-PLDPDEPQKVAESVKLLGLRYVVLTSV----ARDDLADGG 121

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
              F  ++ S+ ++    ++   T       +  I     ++ ++           + + 
Sbjct: 122 AGWFVKVMESIRQLNPETQIEVLTPDFWGGKEREISQKQRVNTVVEAKPACYNHNIETVR 181

Query: 304 KS---MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
           +    + R         ++  ++ + P IA  S  ++G  GET+ +   T+  +  +   
Sbjct: 182 RLQGPVRRGANYQRSLNVLKWVKDLDPSIATKSGLMLG-HGETEAEILETLQDLRGVNCD 240

Query: 361 QAFSFKYS 368
           +    +Y 
Sbjct: 241 RLTLGQYM 248


>gi|189485131|ref|YP_001956072.1| putative Fe-S oxidoreductase [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
 gi|170287090|dbj|BAG13611.1| putative Fe-S oxidoreductase [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
          Length = 844

 Score = 53.4 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 51/287 (17%), Positives = 102/287 (35%), Gaps = 29/287 (10%)

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           KR+++ + +     + +  V   ++R       + +  GC   C FC           R 
Sbjct: 256 KRILNLENAYFPGKKIIPFVKTVHDRLN-----IEVARGCPGQCRFCQASKYYHPWRQRP 310

Query: 207 LSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
             +++D  +K I + G  EI+    + + ++            +LL   + + G   L  
Sbjct: 311 PEKLLDLIKKGIQSTGFEEISFSSLSCSDYK---------NLDELLIETNNLCGKSNLSI 361

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI--R 323
           +    R     L  A        P L    ++G+   ++++  ++ +   +QI++ +   
Sbjct: 362 SLPSLRCNKHSLKVARYVNTSKRPTLTFAPEAGT-ERMRNVIGKYLSE--KQIVETLLTA 418

Query: 324 SVRPDIAISSDFIVGFPGETDDD---FRATMDLVDKIGYA---QAFSFKYSPRLGTPGSN 377
           S      I   F++G P E D+D       + LV K             + P+  T    
Sbjct: 419 SAMGWKVIKLYFMIGLPTEADEDIAGIERLVKLVRKKAKDLNFNITVSPFVPKAQT-AFQ 477

Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE 424
                  +    ++  L K L     + N    G I+E LI K  + 
Sbjct: 478 WAPMAGADEIKRKINLLNKLLPANVKTHNRRA-G-ILEALIAKGDRR 522


>gi|153938525|ref|YP_001392937.1| biotin synthase [Clostridium botulinum F str. Langeland]
 gi|168181049|ref|ZP_02615713.1| radical SAM domain protein [Clostridium botulinum NCTC 2916]
 gi|226951035|ref|YP_002806126.1| radical SAM domain protein [Clostridium botulinum A2 str. Kyoto]
 gi|152934421|gb|ABS39919.1| radical SAM domain protein [Clostridium botulinum F str. Langeland]
 gi|182668167|gb|EDT80146.1| radical SAM domain protein [Clostridium botulinum NCTC 2916]
 gi|226840946|gb|ACO83612.1| radical SAM domain protein [Clostridium botulinum A2 str. Kyoto]
 gi|295320915|gb|ADG01293.1| radical SAM domain protein [Clostridium botulinum F str. 230613]
          Length = 348

 Score = 53.4 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 28/226 (12%), Positives = 72/226 (31%), Gaps = 16/226 (7%)

Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP-YTRGIEISR-SL 207
           +D +      ++        YN K  +   +     C   C +C +       E  R S 
Sbjct: 26  IDKENKKYLIYKAHETSLKHYNNKVYLRGLIEFTNYCKNACLYCGISCNNNNAERYRLSE 85

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
            ++++  +K    G     L G     +    +     +   L  + +    +    Y  
Sbjct: 86  EEILNCCKKGYSLGYRTFVLQGGEDPYYTDNKIIDIIKSIKKLFPNCAVTLSIGEKSY-- 143

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
               +       A  D         L  ++ S  + + ++   +    R  +  ++ +  
Sbjct: 144 ----ETYKKFYDAGADR------YLLRHETASKNLYEKLHPDMSFENRRSCLKNLKKI-- 191

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
              + + F++G P +T++D+   +  + ++         + P   T
Sbjct: 192 GYQVGAGFMIGLPNQTNEDYVNDLIFLKELKPHMVGIGPFIPHKDT 237


>gi|90022128|ref|YP_527955.1| coproporphyrinogen III oxidase [Saccharophagus degradans 2-40]
 gi|89951728|gb|ABD81743.1| oxygen-independent coproporphyrinogen III oxidase [Saccharophagus
           degradans 2-40]
          Length = 484

 Score = 53.4 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 39/244 (15%), Positives = 87/244 (35%), Gaps = 34/244 (13%)

Query: 186 CDKFCTFC----VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLG--QNVNAWRGKG 239
           CD  C +C    ++  T     S             +   + E+ L+    +      + 
Sbjct: 76  CDTVCYYCGCNKII--TANKAKSTP----------YLTAIIKEMDLVAAQVDTTRPVQQL 123

Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSH--PRDMSDCLIKA------HGDLDVL-MPY 290
             G           L+ +   V+ R+  +    RD S  +  A         L  +    
Sbjct: 124 HFGGGTPTFLSDEQLTTLMNAVKARFNVADSAFRDFSIEVHPAGVTPQRIKHLRTIGFNR 183

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
           + + +Q  S  + K++NR ++  +  +++  +R      ++S D I G P +T + F  T
Sbjct: 184 VSMGIQDFSPDVQKAVNRFNSPQQVGELVTAVRENNF-ASLSMDLIYGLPKQTAESFAET 242

Query: 351 MDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN---VKAERLLCLQKKLREQQVSFND 407
           +  +  +   +   F Y+           +Q++        E+L+ LQ+ ++    +   
Sbjct: 243 LQKIIALSPDRIALFNYAHLPHL--FKTQKQINARELPEPQEKLIILQQSIQSLCNAGYQ 300

Query: 408 ACVG 411
             +G
Sbjct: 301 -FIG 303


>gi|303253463|ref|ZP_07339605.1| lipoyl synthase [Actinobacillus pleuropneumoniae serovar 2 str.
           4226]
 gi|307248640|ref|ZP_07530654.1| Lipoyl synthase [Actinobacillus pleuropneumoniae serovar 2 str.
           S1536]
 gi|302647707|gb|EFL77921.1| lipoyl synthase [Actinobacillus pleuropneumoniae serovar 2 str.
           4226]
 gi|306854851|gb|EFM87040.1| Lipoyl synthase [Actinobacillus pleuropneumoniae serovar 2 str.
           S1536]
          Length = 330

 Score = 53.4 bits (127), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 29/214 (13%), Positives = 66/214 (30%), Gaps = 10/214 (4%)

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           + +    E  S  +       G   F+ +   C + C FC V    G  +     +    
Sbjct: 71  HGLHSVCEEASCPNLHECFNHGTATFMIMGAICTRRCPFCDV--AHGKPLQLDPEEPRKV 128

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
           A  + D  +  + +   +    R    D     F+  +  +  +    ++       R  
Sbjct: 129 AETVQDMKLKYVVITSVD----RDDLADRGAAHFAATVREIKALNPECKVEILVPDFRGR 184

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
            +  ++         P +         R+ + +          +++   +   P+I   S
Sbjct: 185 VEQAVEILKQNP---PDVFNHNLENVPRLYREVRPGADYKWSLELLKIFKQEFPNIPTKS 241

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
             +VG  GET+++    M  +   G       +Y
Sbjct: 242 GLMVGL-GETNEEILEVMQDLRDHGVTMLTIGQY 274


>gi|223044366|ref|ZP_03614400.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Staphylococcus capitis SK14]
 gi|222442235|gb|EEE48346.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Staphylococcus capitis SK14]
          Length = 374

 Score = 53.4 bits (127), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 34/238 (14%), Positives = 93/238 (39%), Gaps = 18/238 (7%)

Query: 177 TAFLTIQEGCDKFCTFCVV-PYTRGIEISRSLSQVVDE-ARKLIDNGVCEITLLGQNVNA 234
           +A++ I   C + CT+C    Y    +    + + +D   +++      ++    + +  
Sbjct: 5   SAYIHIPF-CVRICTYCDFNKYFIDKQ---PVDEYLDALIKEMQVENNRKL----ETMYV 56

Query: 235 WRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP 294
             G            LL +++    +       ++P +++   +         +  + + 
Sbjct: 57  GGGTPTALNIVQLEKLLKAINNTFTIHGEYSFEANPDELTYEKVALLKKYG--VNRISMG 114

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           VQ+    +L+ + R H   +    ++  R    + +IS D +   P ++ +DF+ +++L 
Sbjct: 115 VQTFKPELLEILGRTHKTNDIYSAVNNARKAGIN-SISLDLMYHLPQQSLEDFKQSLELA 173

Query: 355 DKIGYAQAFSFKYSPRLGTPGSNMLEQ-----VDENVKAERLLCLQKKLREQQVSFND 407
            ++      S+       T   NM  +      +E++ A+    L K+L +  ++  +
Sbjct: 174 LEMDIDHISSYGLILEPKTQFYNMYRKGHLKLPNEDLGADMYQYLMKRLEDSNLNQYE 231


>gi|110798915|ref|YP_697246.1| radical SAM family protein [Clostridium perfringens ATCC 13124]
 gi|110802237|ref|YP_699810.1| radical SAM family protein [Clostridium perfringens SM101]
 gi|168205820|ref|ZP_02631825.1| radical SAM protein, TIGR01212 family [Clostridium perfringens E
           str. JGS1987]
 gi|168209798|ref|ZP_02635423.1| radical SAM protein, TIGR01212 family [Clostridium perfringens B
           str. ATCC 3626]
 gi|168213484|ref|ZP_02639109.1| radical SAM protein, TIGR01212 family [Clostridium perfringens CPE
           str. F4969]
 gi|168217322|ref|ZP_02642947.1| radical SAM protein, TIGR01212 family [Clostridium perfringens NCTC
           8239]
 gi|169343337|ref|ZP_02864347.1| radical SAM protein, TIGR01212 family [Clostridium perfringens C
           str. JGS1495]
 gi|182624274|ref|ZP_02952059.1| radical SAM protein, TIGR01212 family [Clostridium perfringens D
           str. JGS1721]
 gi|110673562|gb|ABG82549.1| radical SAM protein, TIGR01212 family [Clostridium perfringens ATCC
           13124]
 gi|110682738|gb|ABG86108.1| radical SAM protein, TIGR01212 family [Clostridium perfringens
           SM101]
 gi|169298635|gb|EDS80716.1| radical SAM protein, TIGR01212 family [Clostridium perfringens C
           str. JGS1495]
 gi|170662698|gb|EDT15381.1| radical SAM protein, TIGR01212 family [Clostridium perfringens E
           str. JGS1987]
 gi|170712056|gb|EDT24238.1| radical SAM protein, TIGR01212 family [Clostridium perfringens B
           str. ATCC 3626]
 gi|170715019|gb|EDT27201.1| radical SAM protein, TIGR01212 family [Clostridium perfringens CPE
           str. F4969]
 gi|177910492|gb|EDT72865.1| radical SAM protein, TIGR01212 family [Clostridium perfringens D
           str. JGS1721]
 gi|182380601|gb|EDT78080.1| radical SAM protein, TIGR01212 family [Clostridium perfringens NCTC
           8239]
          Length = 311

 Score = 53.4 bits (127), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 32/193 (16%), Positives = 66/193 (34%), Gaps = 17/193 (8%)

Query: 188 KFCTFCVVPYT--RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
             CTFC    +     + + S+    D  +++++    E   +         +       
Sbjct: 48  GGCTFCSSKGSGDYAGQRTLSIGTQFDNVKEMMNKKWKEGKYIA------YFQAYTNTYA 101

Query: 246 TFSDLLYSLSEI---KGLVRLRYT--TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300
              +L     E    +G+V L          +    L++       +  ++ L +Q+  D
Sbjct: 102 PVEELRRKYEEAINKEGVVALAIGTRPDCINEEVLDLLEEM--NKKVYTWVELGLQTIHD 159

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
              +S NR +    + + ++ ++S    I      I G PGE+ +    T+D V + G  
Sbjct: 160 DTARSFNRGYDLEVFDKAMEGLKSR--GIDTVVHCIFGLPGESKEQMLETVDYVSRCGAQ 217

Query: 361 QAFSFKYSPRLGT 373
                      GT
Sbjct: 218 GIKLHLLHLMEGT 230


>gi|320352170|ref|YP_004193509.1| Radical SAM domain-containing protein [Desulfobulbus propionicus
           DSM 2032]
 gi|320120672|gb|ADW16218.1| Radical SAM domain protein [Desulfobulbus propionicus DSM 2032]
          Length = 313

 Score = 53.4 bits (127), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 40/212 (18%), Positives = 69/212 (32%), Gaps = 23/212 (10%)

Query: 186 CDKF----CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD 241
           C       C +C  P +      R+   + ++  +       + +LL      +      
Sbjct: 32  CPNRARGGCLYCQ-PASFTPAFLRAADPLAEQISRG------KASLLAGRFTRYFAYFQQ 84

Query: 242 GEKC------TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKA--HGDLDVLMPYLHL 293
                         L   LS+   L  +  T             A            + L
Sbjct: 85  ETPTALATIDLLPHLQRMLSDPDCLGLILSTRPDTIAADLPAALADLIQKTGKAC-LVEL 143

Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
            VQS  DR L+ +NR H   ++   +DR+ +V+  I I +  I+G PGE++ +  AT+  
Sbjct: 144 GVQSIHDRSLRLLNRNHCFADFLAAVDRLHAVQR-IEIGAHLILGIPGESEAEMLATVRT 202

Query: 354 VDKIGYAQAFSFKYSPRLGTPGSNML--EQVD 383
           V  +               TP   +    QV 
Sbjct: 203 VCALPLQHLKLHHLQVIRDTPLHRLYTQGQVP 234


>gi|303230547|ref|ZP_07317301.1| radical SAM domain protein [Veillonella atypica ACS-049-V-Sch6]
 gi|302514788|gb|EFL56776.1| radical SAM domain protein [Veillonella atypica ACS-049-V-Sch6]
          Length = 575

 Score = 53.4 bits (127), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 42/286 (14%), Positives = 100/286 (34%), Gaps = 48/286 (16%)

Query: 175 GVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA 234
           G    + +  GC + C FC+  Y   +   R L  + +   +    G     +       
Sbjct: 247 GAMYIIEVARGCGRHCRFCMAGYCFRVPRVRPLDILKEGVDRAEKLGKKVGLMGA----- 301

Query: 235 WRGKGLDGEKCTFSDLLYSLSEIK-GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHL 293
                       + ++   ++ I+   +R    +     ++  ++    +       + +
Sbjct: 302 --------AISDYPEVDELVTYIRSKDMRYSCASLRADSLTQAVVDGLAESGQ--KTITI 351

Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDF------ 347
             ++GS+R+ + +N+  +  E  +   ++ +      +    ++G P ETD+D       
Sbjct: 352 APETGSERLRRVINKGIS-EENLRTAAQLSAKSGIQHMRLYIMIGLPTETDEDIDAIVGL 410

Query: 348 -RATMDLVDKIGYA---QAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQV 403
              T   + ++G           + P+  TP   M     ++V+ +    LQ    ++ +
Sbjct: 411 AERTQAHMAEVGCKGRLTLSINPFIPKPFTPFQWMAMDHQKSVEKK----LQYI--KKSL 464

Query: 404 SFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGD 449
             N       IEVL+E    ++  + G        VL   +  +G 
Sbjct: 465 QKNRR-----IEVLVE--SPKEAYIQG--------VLARGDRRLGK 495


>gi|238019231|ref|ZP_04599657.1| hypothetical protein VEIDISOL_01095 [Veillonella dispar ATCC 17748]
 gi|237863930|gb|EEP65220.1| hypothetical protein VEIDISOL_01095 [Veillonella dispar ATCC 17748]
          Length = 612

 Score = 53.4 bits (127), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 43/274 (15%), Positives = 85/274 (31%), Gaps = 41/274 (14%)

Query: 99  GDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR---------- 148
            D+ +++ G       +EIL R   V+ VV  +      +L+   + GK           
Sbjct: 83  PDIKIILGGPEVSFTADEILHRCHAVDYVVQGEGEEAFYQLISALQNGKDGLQEEIPGVR 142

Query: 149 ----------VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
                       +     +        V+           +     GC   C +C+    
Sbjct: 143 GRHISGELMGSTEAVEVKDLSTIPFPYVEEDMEDLEHKIIYYESSRGCPFSCQYCL-SGN 201

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258
           +         + + E +  ID+ V ++  + +  N                L+  + +  
Sbjct: 202 KNTVRFFPQDRTLKELQWFIDHKVKQVKFVDRTFNC--------APHHHRPLMEFMRDAD 253

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
                      P  M++       +       + + VQS   + L ++N R+  + Y Q 
Sbjct: 254 TETNFHLE-MEPELMTEWETNILCETPPGRIQIEVGVQSTHKKTLDAIN-RYNDWPYIQ- 310

Query: 319 IDRIRSVRPDI-----AISSDFIVGFPGETDDDF 347
               +++RP I      +  D IVG P E    F
Sbjct: 311 ----KAIRPIIEAGRTHVHMDLIVGLPYENKARF 340


>gi|269122671|ref|YP_003310848.1| coproporphyrinogen dehydrogenase [Sebaldella termitidis ATCC 33386]
 gi|268616549|gb|ACZ10917.1| Coproporphyrinogen dehydrogenase [Sebaldella termitidis ATCC 33386]
          Length = 468

 Score = 53.4 bits (127), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 36/191 (18%), Positives = 71/191 (37%), Gaps = 14/191 (7%)

Query: 170 YNRKRGVTAFLTIQEGCDKFCTFCVVPYT--RGIEISRSLSQVVDEARKLIDNGVCEITL 227
           Y   R +  ++ I   C   C++C  P     G  + R   +  +     I      +  
Sbjct: 137 YMENRTIGIYIGIAY-CPSRCSYCSFPSYLKEGKYLER-FEEYYNTLLYEIREIGKLVKE 194

Query: 228 LGQNVNAWRGKGLDGEKCTFSDLLYSLS------EIKGLVRLRYTTSHPRDMSDCLIKAH 281
           LG  VN     G      +  ++   L       +I  L    Y       + +  ++  
Sbjct: 195 LGLEVNTIYVGGGTPSILSKEEMEKMLRVINQNYDIGKLKEFSYELGRIDTIDEEKLEVL 254

Query: 282 GDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPG 341
            +    +  + +  Q+ + + LK +NR H   ++ +I +  + +     ++ D I+G PG
Sbjct: 255 KN--WNVDRISINPQTFNMKTLKEVNRYHDQEKFDRIFNEAKRM--GFIVNMDLILGLPG 310

Query: 342 ETDDDFRATMD 352
           ET DD   T+ 
Sbjct: 311 ETTDDILYTLQ 321


>gi|326625715|gb|EGE32060.1| oxygen-independent coproporphyrinogen III oxidase [Salmonella
           enterica subsp. enterica serovar Dublin str. 3246]
          Length = 459

 Score = 53.4 bits (127), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 40/248 (16%), Positives = 87/248 (35%), Gaps = 20/248 (8%)

Query: 173 KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEI--TLLGQ 230
           +R ++ ++ I   C K C FC        +  +   Q +D   + I +         + Q
Sbjct: 52  ERPLSLYVHIPF-CHKLCYFCGCNKIVTRQQHK-ADQYLDALEQEIRHRAPLFADRHVSQ 109

Query: 231 NVNAWRGKGLDGEKCTFSDLLYSLSE-----IKGLVRLRYTTSHPRDMSDCLIKAHGDLD 285
            ++   G      K   S L+  L E         + +      PR++   ++       
Sbjct: 110 -LHWGGGTPTYLNKTQISRLMTLLRENFHFNTDAEISIEV---DPREIELDVLDHLRAEG 165

Query: 286 VLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS-DFIVGFPGETD 344
                L + VQ  +  + + +NR         +++  R +      ++ D I G P +T 
Sbjct: 166 --FNRLSMGVQDFNKEVQRLVNREQDEEFIFALLNHARDI--GFTSTNIDLIYGLPKQTP 221

Query: 345 DDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQV 403
           + F  T+  V ++   +   F Y+       +   ++  D     ++L  LQ+ +     
Sbjct: 222 ESFAFTLKRVTELNPDRLSVFNYAHLPTLFAAQRKIKDADLPSAQQKLDILQETIVSLTQ 281

Query: 404 SFNDACVG 411
           +     +G
Sbjct: 282 AGYQ-FIG 288


>gi|225181025|ref|ZP_03734472.1| Coproporphyrinogen dehydrogenase [Dethiobacter alkaliphilus AHT 1]
 gi|225168222|gb|EEG77026.1| Coproporphyrinogen dehydrogenase [Dethiobacter alkaliphilus AHT 1]
          Length = 386

 Score = 53.4 bits (127), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 47/258 (18%), Positives = 92/258 (35%), Gaps = 20/258 (7%)

Query: 128 VGPQTYYRLPELLERARFGKRVVDTDYSVE----DKFERL-------SIVDGGYNRKRGV 176
           VG +   +L  LL++    +   +  +S      +KF+ L         +    +R    
Sbjct: 10  VGVRPAKQLHTLLDKGFDYEAAFEYMHSKHGISKEKFDLLWRVAEVERPILSESSRPGLF 69

Query: 177 TAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR 236
           + ++ I   C   C +C  P     E+ +   Q VD     I+           N     
Sbjct: 70  SVYVGIPF-CPTRCLYCSFPSHSLKELGKLRGQFVDTLLWEIEETAKMAAKYKLNPYTVY 128

Query: 237 GKGLDGEKCTFSDLLYSLSEI----KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLH 292
             G      + +DL   LS +     G++R     +   D       A      +   + 
Sbjct: 129 VGGGTPTALSPTDLKRVLSALREAFPGVLREFTVEAGRADTLTDEHLAVLSHHQVSR-VS 187

Query: 293 LPVQSGSDRILKSMNRRHTAYEYRQIIDRIR-SVRPDIAISSDFIVGFPGETDDDFRATM 351
           +  Q+   + L+ + R H+A +  +   +++ +  P   ++ D IVG PGE     R +M
Sbjct: 188 VNPQTMHGKTLELIGRCHSAEDVDRAARKVKQAKIP--VLNMDLIVGLPGEDALMVRESM 245

Query: 352 DLVDKIGYAQAFSFKYSP 369
           + +  +         +SP
Sbjct: 246 EQIMALAPENITLHVFSP 263


>gi|163814886|ref|ZP_02206274.1| hypothetical protein COPEUT_01037 [Coprococcus eutactus ATCC 27759]
 gi|158449825|gb|EDP26820.1| hypothetical protein COPEUT_01037 [Coprococcus eutactus ATCC 27759]
          Length = 521

 Score = 53.4 bits (127), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 31/192 (16%), Positives = 71/192 (36%), Gaps = 21/192 (10%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEK 244
           C   C +C          S  ++   D+    +D    E+  + +  +  +   +  G  
Sbjct: 204 CPTRCLYCSFT-------SYPIAVYKDKVEAYLDALEKEMEYVAEAYSRKKLISIYIGGG 256

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMS----------DCLIKAHGDLDVLMPYLHLP 294
              S    ++  + G++   +  S+ R+ +             +         +  + + 
Sbjct: 257 TPSSISAENMDRLCGMIERAFDLSYVREFTIEAGRPDSTTYDKLAVMKKHG--VTRISIN 314

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
            Q+ +++ L+++ R HT  + R+ ++  R V  D  I+ D IVG PGE  D    T+  +
Sbjct: 315 PQTMNEQTLRTIGRAHTPDQTREAMEMARRVGFD-NINMDLIVGLPGEDTDAVENTLRQI 373

Query: 355 DKIGYAQAFSFK 366
            ++         
Sbjct: 374 RELAPESLTVHT 385


>gi|314933756|ref|ZP_07841121.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Staphylococcus caprae C87]
 gi|313653906|gb|EFS17663.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Staphylococcus caprae C87]
          Length = 374

 Score = 53.4 bits (127), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 34/238 (14%), Positives = 93/238 (39%), Gaps = 18/238 (7%)

Query: 177 TAFLTIQEGCDKFCTFCVV-PYTRGIEISRSLSQVVDE-ARKLIDNGVCEITLLGQNVNA 234
           +A++ I   C + CT+C    Y    +    + + +D   +++      ++    + +  
Sbjct: 5   SAYIHIPF-CVRICTYCDFNKYFIDKQ---PVDEYLDALIKEMQVENNRKL----ETMYV 56

Query: 235 WRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP 294
             G            LL +++    +       ++P +++   +         +  + + 
Sbjct: 57  GGGTPTALNIVQLEKLLKAINNTFTIHGEYSFEANPDELTYEKVALLKKYG--VNRISMG 114

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           VQ+    +L+ + R H   +    ++  R    + +IS D +   P ++ +DF+ +++L 
Sbjct: 115 VQTFKPELLEILGRTHKTNDIYSAVNNARKAGIN-SISLDLMYHLPQQSLEDFKQSLELA 173

Query: 355 DKIGYAQAFSFKYSPRLGTPGSNMLEQ-----VDENVKAERLLCLQKKLREQQVSFND 407
            ++      S+       T   NM  +      +E++ A+    L K+L +  ++  +
Sbjct: 174 LEMDIDHISSYGLILEPKTQFYNMYRKGHLKLPNEDLGADMYQYLMKRLEDSNLNQYE 231


>gi|254392432|ref|ZP_05007613.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC
           27064]
 gi|294812603|ref|ZP_06771246.1| Radical SAM domain protein [Streptomyces clavuligerus ATCC 27064]
 gi|197706100|gb|EDY51912.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC
           27064]
 gi|294325202|gb|EFG06845.1| Radical SAM domain protein [Streptomyces clavuligerus ATCC 27064]
          Length = 651

 Score = 53.4 bits (127), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 65/399 (16%), Positives = 120/399 (30%), Gaps = 67/399 (16%)

Query: 70  CHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG 129
           C +     + V      +R  K +    G + ++                   + +  +G
Sbjct: 174 CAVIGDGEQAVLDMTRIVREWKAAGRPGGREEVLFRLARTGNIYVPGFYDVEYLPDGRIG 233

Query: 130 --PQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCD 187
                   +P  + +      V+D D     K   + + +  + R       + I  GC 
Sbjct: 234 RVVPNRSGVPWRVSK----HTVMDLDEWPYPKQPLVPLAETVHERMS-----VEIFRGCT 284

Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCT 246
           + C FC           RS++ + +   K +   G  E+ LL     +       GE   
Sbjct: 285 RGCRFCQAGMITRPVRERSITGIGEMVEKGLKATGFEEVGLLS---LSSADHSEIGEIAK 341

Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306
                Y+  +I     L   ++     +  L             L    + GS+R+ K +
Sbjct: 342 GLADRYTEDKIG----LSLPSTRVDAFNVDLANELTRNGR-RSGLTFAPEGGSERMRKVI 396

Query: 307 NRRHTAYEYRQIIDR-----IRSVRPDIAISSDFIVGFPGETDDDFRATMDLV------- 354
           N+  +  +  + +        R V+        F+ G P ETD+D     D+        
Sbjct: 397 NKMVSEEDLIRTVATAYGNGWRQVK------LYFMCGLPTETDEDVLQIGDMAVNVIAKG 450

Query: 355 ------DKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLR--------- 399
                   I         + P+  TP      Q+       RL  L+ K+R         
Sbjct: 451 REVSGSQDIRCT-VSIGGFVPKPHTP-FQWAPQLSAEDTDARLAKLRDKIRGDKKYGRSI 508

Query: 400 ------------EQQVSFNDACVGQIIEVLIEKHGKEKG 426
                       E  +S  D  +G +I  + E  G+  G
Sbjct: 509 GFRYHDGKPGIVEGLLSRGDRRIGAVIRAVYEDGGRFDG 547


>gi|120612224|ref|YP_971902.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Acidovorax citrulli AAC00-1]
 gi|120590688|gb|ABM34128.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Acidovorax citrulli AAC00-1]
          Length = 390

 Score = 53.4 bits (127), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 36/209 (17%), Positives = 72/209 (34%), Gaps = 17/209 (8%)

Query: 186 CDKFCTFCVV--PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
           C K C +C       RG   +    + +D     ++  +  +   G+ V++    G  G 
Sbjct: 23  CLKKCPYCDFNSHEARGGAGALQEQRYLDALMADLEAALPLVW--GRTVHSVFIGG--GT 78

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY-------LHLPVQ 296
              FS    ++ ++ G VR R       +++        + D    Y       L + VQ
Sbjct: 79  PSLFS--PQAIDQLIGGVRARLRLEADAEITLEANPGTFEKDRFRAYRAAGVTRLSVGVQ 136

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
           S  DR L+++ R H   +    +            + D +   PG++ +D    + L   
Sbjct: 137 SFDDRFLQALGRVHDRAQALAAVQEAAQAFD--TFNLDIMYALPGQSLEDLERDVALALS 194

Query: 357 IGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
           +       +  +    T  +     V E+
Sbjct: 195 LQPPHLSIYHLTIEPNTYFARFPPVVPED 223


>gi|120401929|ref|YP_951758.1| lipoyl synthase [Mycobacterium vanbaalenii PYR-1]
 gi|119954747|gb|ABM11752.1| lipoic acid synthetase [Mycobacterium vanbaalenii PYR-1]
          Length = 306

 Score = 53.4 bits (127), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 41/245 (16%), Positives = 81/245 (33%), Gaps = 27/245 (11%)

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQ-EGCDKFCTFCVVPYTRGIEISRSLSQVVD 212
           ++V ++    +I +   +R+    A   I  E C + C FC +   +  E+ R   +   
Sbjct: 52  HTVCEEAGCPNIFECWEDRE----ATFLIGGEQCTRRCDFCQIDTGKPAELDR--DEPRR 105

Query: 213 EARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
            A  +   G+   T+ G      R    DG    +S+ +  +  +     +         
Sbjct: 106 VAESVAAMGLRYSTVTGV----ARDDLPDGGAWLYSETVRQIKALNPNTGVELLIPDFNA 161

Query: 273 MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAIS 332
               L +       ++ +    V     RI K +           ++   R     +   
Sbjct: 162 DPAQLQQVFESRPEVLAHNVETV----PRIFKRIRPGFRYERSLSVLTMARDY--GLVTK 215

Query: 333 SDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE-----QVDENVK 387
           S+ I+G  GET ++ R  +  + + G       +Y      P +           DE V+
Sbjct: 216 SNLILGM-GETPEEVREALVDLHQAGCDIVTITQYLR----PSARHHPVERWVHPDEFVE 270

Query: 388 AERLL 392
            ER  
Sbjct: 271 HERYA 275


>gi|83311421|ref|YP_421685.1| lipoyl synthase [Magnetospirillum magneticum AMB-1]
 gi|82946262|dbj|BAE51126.1| Lipoate synthase [Magnetospirillum magneticum AMB-1]
          Length = 273

 Score = 53.4 bits (127), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 35/218 (16%), Positives = 71/218 (32%), Gaps = 16/218 (7%)

Query: 153 DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVD 212
           + ++    E  +  + G   K     F+ + + C + C FC V        S  L++   
Sbjct: 7   EKNLHTVCEEAACPNIGECWKHKHATFMILGDTCTRACAFCNVKTGNPK-GSVDLTEPEH 65

Query: 213 EARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
            A  +   G+  + +   +    R    DG    F   +  +  +     +   T   RD
Sbjct: 66  LAESVKAMGLKHVVITSVD----RDDLADGGAFQFVACIERIRAVTPQCTIEVLTPDFRD 121

Query: 273 MSDCLIKAHGDLDVLMPY---LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329
             D + +       +  +       +  G       +      +E  +++ R ++  P I
Sbjct: 122 KGDGVERIAVARPDVFNHNLETVPRLYPG-------IRPGARYFESLRVLQRAKAADPSI 174

Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
              S  +VG  GE   +    MD +   G       +Y
Sbjct: 175 FTKSGIMVGL-GEERAEVLQVMDDMRSAGVDFITIGQY 211


>gi|134300377|ref|YP_001113873.1| radical SAM domain-containing protein [Desulfotomaculum reducens
           MI-1]
 gi|134053077|gb|ABO51048.1| Radical SAM domain protein [Desulfotomaculum reducens MI-1]
          Length = 624

 Score = 53.4 bits (127), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 52/303 (17%), Positives = 106/303 (34%), Gaps = 34/303 (11%)

Query: 62  ADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVV---VAGCVAQAEGEEIL 118
           AD I L    +  +  E ++  +   + LK         LL     + G    +  +   
Sbjct: 154 ADFIDL---FVIGEGEEVIHELIDVYKELKEKGTNRQDMLLYFAKHIPGVYVPSLYDVKY 210

Query: 119 RRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTA 178
                V  +V  +            + GKR++  D+   D      +   G    R    
Sbjct: 211 NDDQTVKAIVPTKDGVPE-------KIGKRII-KDFDNVDFPTNPIVPTMGVVHDR---V 259

Query: 179 FLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRG 237
            + +  GC + C FC           +    +V +  ++I N G  EI+L   +   + G
Sbjct: 260 MVEVLRGCTRGCRFCQAGVLYRPVREKKPETLVRQVEEMIANTGHDEISLTSLSTADYTG 319

Query: 238 KGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY-LHLPVQ 296
                       L+ +L +I G   +  +    R  +   I    ++  +    L    +
Sbjct: 320 VAP---------LVKNLLDIYGERGVNVSLPSLRLDAFS-IDLAKEVQKVRKSGLTFAPE 369

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD--IAISSDFIVGFPGETDDDFRATMDLV 354
           +G+ R+   +N+  T      ++D + S   +   ++   F++G P ET +D     ++ 
Sbjct: 370 AGTQRLRDVINKNVTEQ---NLVDAVTSAFQNGWSSVKLYFMIGLPTETYEDIDGIAEMA 426

Query: 355 DKI 357
            K+
Sbjct: 427 KKV 429


>gi|53729240|ref|ZP_00133771.2| COG0320: Lipoate synthase [Actinobacillus pleuropneumoniae serovar
           1 str. 4074]
 gi|126209057|ref|YP_001054282.1| lipoyl synthase [Actinobacillus pleuropneumoniae L20]
 gi|190150924|ref|YP_001969449.1| lipoyl synthase [Actinobacillus pleuropneumoniae serovar 7 str.
           AP76]
 gi|303250841|ref|ZP_07337035.1| lipoyl synthase [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
 gi|307246515|ref|ZP_07528587.1| Lipoyl synthase [Actinobacillus pleuropneumoniae serovar 1 str.
           4074]
 gi|307253256|ref|ZP_07535130.1| Lipoyl synthase [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
 gi|307255501|ref|ZP_07537307.1| Lipoyl synthase [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|307257671|ref|ZP_07539430.1| Lipoyl synthase [Actinobacillus pleuropneumoniae serovar 10 str.
           D13039]
 gi|307259952|ref|ZP_07541665.1| Lipoyl synthase [Actinobacillus pleuropneumoniae serovar 11 str.
           56153]
 gi|307264278|ref|ZP_07545867.1| Lipoyl synthase [Actinobacillus pleuropneumoniae serovar 13 str.
           N273]
 gi|166226341|sp|A3N2P1|LIPA_ACTP2 RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|238692403|sp|B3H2J0|LIPA_ACTP7 RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|126097849|gb|ABN74677.1| lipoyl synthase [Actinobacillus pleuropneumoniae serovar 5b str.
           L20]
 gi|189916055|gb|ACE62307.1| lipoyl synthase [Actinobacillus pleuropneumoniae serovar 7 str.
           AP76]
 gi|302650354|gb|EFL80516.1| lipoyl synthase [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
 gi|306852578|gb|EFM84811.1| Lipoyl synthase [Actinobacillus pleuropneumoniae serovar 1 str.
           4074]
 gi|306859243|gb|EFM91282.1| Lipoyl synthase [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
 gi|306861543|gb|EFM93531.1| Lipoyl synthase [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|306863846|gb|EFM95770.1| Lipoyl synthase [Actinobacillus pleuropneumoniae serovar 10 str.
           D13039]
 gi|306865980|gb|EFM97855.1| Lipoyl synthase [Actinobacillus pleuropneumoniae serovar 11 str.
           56153]
 gi|306870342|gb|EFN02097.1| Lipoyl synthase [Actinobacillus pleuropneumoniae serovar 13 str.
           N273]
          Length = 330

 Score = 53.4 bits (127), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 29/214 (13%), Positives = 66/214 (30%), Gaps = 10/214 (4%)

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           + +    E  S  +       G   F+ +   C + C FC V    G  +     +    
Sbjct: 71  HGLHSVCEEASCPNLHECFNHGTATFMIMGAICTRRCPFCDV--AHGKPLPLDPEEPRKV 128

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
           A  + D  +  + +   +    R    D     F+  +  +  +    ++       R  
Sbjct: 129 AETVQDMKLKYVVITSVD----RDDLADRGAAHFAATVREIKALNPECKVEILVPDFRGR 184

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
            +  ++         P +         R+ + +          +++   +   P+I   S
Sbjct: 185 VEQAVEILKQNP---PDVFNHNLENVPRLYREVRPGADYKWSLELLKIFKQEFPNIPTKS 241

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
             +VG  GET+++    M  +   G       +Y
Sbjct: 242 GLMVGL-GETNEEILEVMQDLRDHGVTMLTIGQY 274


>gi|270263223|ref|ZP_06191493.1| putative Fe-S oxidoreductase [Serratia odorifera 4Rx13]
 gi|270042911|gb|EFA16005.1| putative Fe-S oxidoreductase [Serratia odorifera 4Rx13]
          Length = 308

 Score = 53.4 bits (127), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 57/174 (32%), Gaps = 8/174 (4%)

Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTF 247
             CTFC V      ++ R    + ++ R            L              E    
Sbjct: 43  GGCTFCNVASFADEQMQR--QSIAEQLRVQAGRVNRAKRYLA---YFQAYTSTYAEVSLL 97

Query: 248 SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMP-YLHLPVQSGSDRILKSM 306
           +D+         ++ +   T         L    G L+     +L L +Q+  D+ LK +
Sbjct: 98  ADMYRQALAQADMIGICVGTRPDCVPPAALDLLAGYLEQGYEVWLELGLQTAHDKTLKRI 157

Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
           NR H    Y+      R     + + S  IVG PGE   D  AT+  V   G  
Sbjct: 158 NRGHNFSCYQHTARLARER--GLKVCSHLIVGLPGENSADHLATLRQVVDSGVD 209


>gi|295689373|ref|YP_003593066.1| lipoic acid synthetase [Caulobacter segnis ATCC 21756]
 gi|295431276|gb|ADG10448.1| lipoic acid synthetase [Caulobacter segnis ATCC 21756]
          Length = 325

 Score = 53.4 bits (127), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 37/212 (17%), Positives = 70/212 (33%), Gaps = 12/212 (5%)

Query: 178 AFLTIQ-EGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR 236
           A + I  E C + C FC V  T G+       +    A  +   G+  + +   +    R
Sbjct: 81  ATMMIMGEICTRACAFCNV--TTGLPTQLDPDEPRRVAEAVAKMGLKHVVITSVD----R 134

Query: 237 GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQ 296
              LDG    F++++ ++        +   T                   +  +    ++
Sbjct: 135 DDLLDGGARHFAEVVTAIRAAAPGTTIEILTPDFLRKDGAETVVIDSKPDVFNH---NLE 191

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
           +     LK +      Y   +++DR++   P     S  +VG  GET ++    MD +  
Sbjct: 192 TVPRLYLK-IRPGARYYNSLRLLDRVKQRDPSQFTKSGLMVGL-GETKEEVMQVMDDMRS 249

Query: 357 IGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
            G       +Y        +       E  KA
Sbjct: 250 AGVDFITIGQYLQPTRKHAAVERFVTPEEFKA 281


>gi|262194536|ref|YP_003265745.1| Fe-S oxidoreductase-like protein [Haliangium ochraceum DSM 14365]
 gi|262077883|gb|ACY13852.1| Fe-S oxidoreductase-like protein [Haliangium ochraceum DSM 14365]
          Length = 668

 Score = 53.4 bits (127), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 53/158 (33%), Gaps = 15/158 (9%)

Query: 173 KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDNGVCEITLLGQN 231
               T  + I  GC   C FC  P+ +G  I  R++  +  E   L+ + +     +   
Sbjct: 209 PNPPTVAVEIMRGCPFRCYFCTEPHVKGRRIDYRNIESITAEIEFLLSHNLRRFWFVCSE 268

Query: 232 VNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL 291
           +N     G D       +++       G        S P+           +L  L    
Sbjct: 269 LNIQ---GTDFAMSLGEEIIRLGERWPGTPIEWSGYSLPK-------MEVAELRTLQRAG 318

Query: 292 HLP----VQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
           ++     V S  D  L+     + +++  + +  + S+
Sbjct: 319 YVGALNDVLSLDDDNLRRAQVPYRSHQAVRFLKAMASL 356


>gi|260911686|ref|ZP_05918265.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str.
           F0295]
 gi|260634183|gb|EEX52294.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str.
           F0295]
          Length = 343

 Score = 53.4 bits (127), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 35/116 (30%), Positives = 51/116 (43%), Gaps = 7/116 (6%)

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
            +P D++    +    L   +  + + VQ+ SD  L  + RRH A +    I R+R V  
Sbjct: 65  CNPDDLTPQFAQTIARLS--VNRVSMGVQTFSDERLNFLRRRHKAADIEPAIQRLRQVGI 122

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP--RLGTPGSNMLEQ 381
              IS D I GFP +T +++    DL   I         YS     GTP   +LEQ
Sbjct: 123 G-NISIDLIFGFPKQTVNEWAT--DLQKAIELDVEHISAYSLMYEEGTPLFRLLEQ 175


>gi|253577823|ref|ZP_04855095.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251850141|gb|EES78099.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 349

 Score = 53.4 bits (127), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 47/298 (15%), Positives = 93/298 (31%), Gaps = 38/298 (12%)

Query: 170 YNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE-ISR-SLSQVVDEARKLIDNGVCEITL 227
           Y  K  V   +     C   C +C +  +       R SL Q++       + G     L
Sbjct: 50  YGNKIYVRGLIEFTNYCKNNCYYCGIRCSNTDADRYRLSLEQILSCCETGWNLGFRTFVL 109

Query: 228 LGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL 287
            G       G+           ++ ++ EI     +  +     + S          +  
Sbjct: 110 QG-------GEDPHFTDEHICQIVRTIKEIYPDCAVTLSIGEKSEESYQ-----AYFNAG 157

Query: 288 MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDF 347
                L  ++  +   K ++    +  +R+   +             F+VG PG+T D  
Sbjct: 158 ADRYLLRHETADEDHYKKLHPEQMSLVFRKNCLKNLKKI-GYQTGCGFMVGSPGQTVDTL 216

Query: 348 RATMDLVDKIGYAQAFSFKYSPRLGTP-GSNMLEQVDENVKAERLLCLQKKLREQQVSFN 406
                 + ++         + P   TP    +   +++ +   RLL + + +    +   
Sbjct: 217 YRDFLFIKELKPEMIGIGPFIPHKDTPFAKELPGTLEQTL---RLLSIIRLIHPHALLPA 273

Query: 407 DACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLY 464
              +G      I+  G+EKG L G         +   N +    + VR       TLY
Sbjct: 274 TTALGT-----IDPKGREKGILAG-------ANVVMPNLSP---VNVR----DKYTLY 312


>gi|160898224|ref|YP_001563806.1| coproporphyrinogen III oxidase [Delftia acidovorans SPH-1]
 gi|160363808|gb|ABX35421.1| oxygen-independent coproporphyrinogen III oxidase [Delftia
           acidovorans SPH-1]
          Length = 460

 Score = 53.4 bits (127), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 33/194 (17%), Positives = 66/194 (34%), Gaps = 16/194 (8%)

Query: 186 CDKFCTFCVVPYTRGIEISRSL--------SQVVDEARKLIDNGVCEITLLGQNVNAWRG 237
           C+  C +C           R+            +  A       V ++ L G        
Sbjct: 64  CESLCYYCACNKIVTRHHDRAAVYLDYLAREMALHTAHCGKGQTVSQLHLGGGTPT---- 119

Query: 238 KGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQS 297
              D E  T   LL    +++           PR +S   +    +L      L   VQ 
Sbjct: 120 FFSDDELRTLMGLLREHFKLEPGGEYSIEV-DPRTVSVERLAVLKELG--FNRLSFGVQD 176

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
             +++  +++R   A +  +++   R +    +I+ D I G P +T + F  T+  V+ +
Sbjct: 177 FDEQVQIAVHRVQPAEQVFELVAAARQL-GFASINVDLIYGLPKQTPESFERTLAQVNAL 235

Query: 358 GYAQAFSFKYSPRL 371
              +   + Y+   
Sbjct: 236 RPDRIALYAYAHLP 249


>gi|205354413|ref|YP_002228214.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|205274194|emb|CAR39211.1| oxygen-independent coproporphyrinogen III oxidase [Salmonella
           enterica subsp. enterica serovar Gallinarum str. 287/91]
          Length = 457

 Score = 53.4 bits (127), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 40/248 (16%), Positives = 87/248 (35%), Gaps = 20/248 (8%)

Query: 173 KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEI--TLLGQ 230
           +R ++ ++ I   C K C FC        +  +   Q +D   + I +         + Q
Sbjct: 50  ERPLSLYVHIPF-CHKLCYFCGCNKIVTRQQHK-ADQYLDALEQEIRHRAPLFADRHVSQ 107

Query: 231 NVNAWRGKGLDGEKCTFSDLLYSLSE-----IKGLVRLRYTTSHPRDMSDCLIKAHGDLD 285
            ++   G      K   S L+  L E         + +      PR++   ++       
Sbjct: 108 -LHWGGGTPTYLNKTQISRLMTLLRENFHFNTDAEISIEV---DPREIELDVLDHLRAEG 163

Query: 286 VLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS-DFIVGFPGETD 344
                L + VQ  +  + + +NR         +++  R +      ++ D I G P +T 
Sbjct: 164 --FNRLSMGVQDFNKEVQRLVNREQDEEFIFALLNHARDI--GFTSTNIDLIYGLPKQTP 219

Query: 345 DDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQV 403
           + F  T+  V ++   +   F Y+       +   ++  D     ++L  LQ+ +     
Sbjct: 220 ESFAFTLKRVTELNPDRLSVFNYAHLPTLFAAQRKIKDADLPSAQQKLDILQETIVSLTQ 279

Query: 404 SFNDACVG 411
           +     +G
Sbjct: 280 AGYQ-FIG 286


>gi|167551518|ref|ZP_02345273.1| oxygen-independent coproporphyrinogen III oxidase [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
 gi|168244250|ref|ZP_02669182.1| oxygen-independent coproporphyrinogen III oxidase [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL486]
 gi|168467333|ref|ZP_02701170.1| oxygen-independent coproporphyrinogen III oxidase [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
 gi|194443776|ref|YP_002043226.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194448265|ref|YP_002048007.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|197262083|ref|ZP_03162157.1| oxygen-independent coproporphyrinogen III oxidase [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
 gi|198243649|ref|YP_002217925.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|207859196|ref|YP_002245847.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|194402439|gb|ACF62661.1| oxygen-independent coproporphyrinogen III oxidase [Salmonella
           enterica subsp. enterica serovar Newport str. SL254]
 gi|194406569|gb|ACF66788.1| oxygen-independent coproporphyrinogen III oxidase [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL476]
 gi|195630221|gb|EDX48861.1| oxygen-independent coproporphyrinogen III oxidase [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
 gi|197240338|gb|EDY22958.1| oxygen-independent coproporphyrinogen III oxidase [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
 gi|197938165|gb|ACH75498.1| oxygen-independent coproporphyrinogen III oxidase [Salmonella
           enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|205323686|gb|EDZ11525.1| oxygen-independent coproporphyrinogen III oxidase [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
 gi|205336920|gb|EDZ23684.1| oxygen-independent coproporphyrinogen III oxidase [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL486]
 gi|206710999|emb|CAR35367.1| oxygen-independent coproporphyrinogen III oxidase [Salmonella
           enterica subsp. enterica serovar Enteritidis str.
           P125109]
          Length = 457

 Score = 53.4 bits (127), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 40/248 (16%), Positives = 87/248 (35%), Gaps = 20/248 (8%)

Query: 173 KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEI--TLLGQ 230
           +R ++ ++ I   C K C FC        +  +   Q +D   + I +         + Q
Sbjct: 50  ERPLSLYVHIPF-CHKLCYFCGCNKIVTRQQHK-ADQYLDALEQEIRHRAPLFADRHVSQ 107

Query: 231 NVNAWRGKGLDGEKCTFSDLLYSLSE-----IKGLVRLRYTTSHPRDMSDCLIKAHGDLD 285
            ++   G      K   S L+  L E         + +      PR++   ++       
Sbjct: 108 -LHWGGGTPTYLNKTQISRLMTLLRENFHFNTDAEISIEV---DPREIELDVLDHLRAEG 163

Query: 286 VLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS-DFIVGFPGETD 344
                L + VQ  +  + + +NR         +++  R +      ++ D I G P +T 
Sbjct: 164 --FNRLSMGVQDFNKEVQRLVNREQDEEFIFALLNHARDI--GFTSTNIDLIYGLPKQTP 219

Query: 345 DDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQV 403
           + F  T+  V ++   +   F Y+       +   ++  D     ++L  LQ+ +     
Sbjct: 220 ESFAFTLKRVTELNPDRLSVFNYAHLPTLFAAQRKIKDADLPSAQQKLDILQETIVSLTQ 279

Query: 404 SFNDACVG 411
           +     +G
Sbjct: 280 AGYQ-FIG 286


>gi|85859404|ref|YP_461606.1| coproporphyrinogen III oxidase [Syntrophus aciditrophicus SB]
 gi|85722495|gb|ABC77438.1| coproporphyrinogen III oxidase [Syntrophus aciditrophicus SB]
          Length = 404

 Score = 53.4 bits (127), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 32/190 (16%), Positives = 66/190 (34%), Gaps = 7/190 (3%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C+  C +C   +    E+SR ++  +D   + ++            +    G        
Sbjct: 44  CEIKCRYCD--FFSVTELSR-ITDFLDAICREMNLRGKVFKFF-DTLYIGGGTPSVLRPD 99

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL-MPYLHLPVQSGSDRILK 304
             + LL  L +   + +    T          +    +L  L +  L++ VQS  + IL+
Sbjct: 100 QLNRLLEHLHQHFKISKEAEITLEANPADIS-VSVMKELRSLGINRLNIGVQSFDNHILE 158

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
            + RRH   +  + I+             D I G PG+  + +  T++            
Sbjct: 159 FLGRRHNGRQAIRAIEASLQAGFG-NFGIDLIYGIPGQKRNTWIKTLEQALTFQIPHLSC 217

Query: 365 FKYSPRLGTP 374
           ++ +    TP
Sbjct: 218 YQLTVEPETP 227


>gi|149209891|ref|XP_001522320.1| hypothetical protein MGCH7_ch7g427 [Magnaporthe oryzae 70-15]
 gi|86196382|gb|EAQ71020.1| hypothetical protein MGCH7_ch7g427 [Magnaporthe oryzae 70-15]
          Length = 445

 Score = 53.4 bits (127), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 33/212 (15%), Positives = 74/212 (34%), Gaps = 15/212 (7%)

Query: 162 RLSIVDGGYNRKRGVTAFLTIQ---EGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLI 218
           R   +   +       A  TI    + C + C FC V  +R         +  + A  L 
Sbjct: 159 RCPNISDCWGGSSKAAATATIMLMGDTCTRGCRFCSVKTSRAPA-PLDPHEPENTAEALA 217

Query: 219 DNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLI 278
             G+  + L   +    R    DG    F++ +  + + K    L    +        ++
Sbjct: 218 RWGLGYVVLTSVD----RDDLADGGARHFAETIRKI-KAKKPTLLVEALTGDFQGDLEMV 272

Query: 279 KAHGDLDV-LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR-PDIAISSDFI 336
           +   D  + +  +    V+  +  +     RR T  +  +++  ++  +  DI   +  +
Sbjct: 273 RLVADSGLDVYAHNVETVEGLTPYVRD---RRATFRQSLKVLAEVKRHKGDDIITKTSIM 329

Query: 337 VGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
           +G  GET+++    +  + K         +Y 
Sbjct: 330 LGL-GETEEELFEALRELRKAQVDVVTFGQYM 360


>gi|256750957|ref|ZP_05491840.1| Radical SAM domain protein [Thermoanaerobacter ethanolicus CCSD1]
 gi|256750067|gb|EEU63088.1| Radical SAM domain protein [Thermoanaerobacter ethanolicus CCSD1]
          Length = 591

 Score = 53.4 bits (127), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 54/286 (18%), Positives = 103/286 (36%), Gaps = 24/286 (8%)

Query: 71  HIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGP 130
            +  +  E +   +    + K  R +    L +V     +Q +G  + +    V    G 
Sbjct: 163 FVMGEGEEVINEIIDAYIDWKKKRGEREEFLQIV-----SQIKGVYVPKYYIEVYNQDGT 217

Query: 131 QTYYRLPELLERARFGKRVV-DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKF 189
               R  +     +  KR+V D +     + + +  +D  ++R       L I  GC + 
Sbjct: 218 IKEIRTIKKGVPEKVKKRIVKDFENVYHPEEQIVPFMDIVHDR-----IMLEIFRGCTRG 272

Query: 190 CTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFS 248
           C FC           +S  +++D A KLI + G  EI+L   +   +             
Sbjct: 273 CRFCQAGMIYRPVREKSKEKILDLADKLIKSTGYEEISLTSLSTCDY---------SQIE 323

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY-LHLPVQSGSDRILKSMN 307
           DL+  L E      +  +    R  +   I    ++  +    L L  ++G+ R+   +N
Sbjct: 324 DLVKKLIEKYKDKGVGVSIPSTRVDAVS-INLLKEIQKVRKTGLTLAPEAGTQRLRDVIN 382

Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
           +  T     +      S      +   F++G P ET +D    +DL
Sbjct: 383 KGITEENILEATKEAFSAGWT-NVKLYFMIGLPTETMEDVEGIVDL 427


>gi|329957644|ref|ZP_08298119.1| radical SAM protein family [Bacteroides clarus YIT 12056]
 gi|328522521|gb|EGF49630.1| radical SAM protein family [Bacteroides clarus YIT 12056]
          Length = 308

 Score = 53.4 bits (127), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 39/204 (19%), Positives = 68/204 (33%), Gaps = 15/204 (7%)

Query: 188 KFCTFCVVPYTRGIEIS--RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
             CT+C             + +S  ++E ++       E+  L             GE  
Sbjct: 43  GGCTYCNNQTFNPDYCRTEKPISLQLEEGKRFFARKYPEMRYLA---YFQAYTNTYGELE 99

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHL----PVQSGSDR 301
           +          + G+V L   T  P  M D L++    L+ +  +  L     ++S  D 
Sbjct: 100 SLKRKYEEALSVDGVVGLVIGT-RPDCMPDDLLRY---LENINKHTFLLVEYGIESTCDE 155

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
            L+ +NR HT       +   R+    I      I+G PGET     A    +  +    
Sbjct: 156 TLRRINRGHTFQTTVDAVQ--RTAACGILTGGHVILGLPGETHPTIVAQARELSHLPLTT 213

Query: 362 AFSFKYSPRLGTPGSNMLEQVDEN 385
               +     GT  +   E+  E+
Sbjct: 214 LKMHQLQLIRGTRMALEYERHPED 237


>gi|328949308|ref|YP_004366645.1| Radical SAM domain protein [Treponema succinifaciens DSM 2489]
 gi|328449632|gb|AEB15348.1| Radical SAM domain protein [Treponema succinifaciens DSM 2489]
          Length = 603

 Score = 53.4 bits (127), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 48/284 (16%), Positives = 90/284 (31%), Gaps = 48/284 (16%)

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQE---------GCDKFCT 191
           E++ F     + D   +  FER            G      + E         GC   C+
Sbjct: 261 EKSAFPLSQAEFDSIYDLPFERKWHPMYDVAASNGKKGIPALSEVKFSLTSCRGCFGACS 320

Query: 192 FCVVPYTRGIEI-SRSLSQVVDEARKL-IDNGVC-EITLLGQNVNAWRGKGLDGEKCTFS 248
           FC + + +G  I SRS   ++ EA+K+  D+     I  +G     +R    + +K   +
Sbjct: 321 FCAITFHQGRRIQSRSHESLLSEAKKMTQDSDFKGYIHDVGGPTANFRSDACEFQKKNGA 380

Query: 249 -----------------------DLLYSLSEIKGLVR------LRYTTSHPRDMSDCLIK 279
                                  +LL  L  +  + +      +R+           L +
Sbjct: 381 CKNRDCLGVSPCQNVKADHKDYIELLKKLRSLPNVKKVFIRSGIRFDYLMLDKDKTFLYE 440

Query: 280 AHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDF---- 335
                  +   L +  +  SD++L  M +  T   Y +          ++ +        
Sbjct: 441 LCKHH--VSGQLKVAPEHVSDKVLALMRKS-THAVYEKFSAEYAKANKELGLKQYLVPYY 497

Query: 336 IVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
           I G PG    +   T   + K G+       + P  G+  + M 
Sbjct: 498 IAGHPGAGIPEAIETALYLKKTGFVPDQVQDFYPTPGSLATCMY 541


>gi|218248317|ref|YP_002373688.1| lipoyl synthase [Cyanothece sp. PCC 8801]
 gi|218168795|gb|ACK67532.1| lipoic acid synthetase [Cyanothece sp. PCC 8801]
          Length = 300

 Score = 53.4 bits (127), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 38/248 (15%), Positives = 81/248 (32%), Gaps = 15/248 (6%)

Query: 130 PQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRG------VTAFLTIQ 183
            Q    LP  L+R+      + T   +  +    +I + G    RG         FL + 
Sbjct: 7   TQDLTPLPRWLKRSIGKASEISTVQRIIKQRNIHTICEEGRCPNRGECYAQKTATFLLMG 66

Query: 184 EGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
             C + C FC V             +    A  +   G+  + L        R    DG 
Sbjct: 67  PTCTRSCAFCQVDKGHAPM-PLDPDEPQKVAESVKLLGLRYVVLTSV----ARDDLADGG 121

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
              F  ++ S+ ++    ++   T       +  I     ++ ++           + + 
Sbjct: 122 AGWFVKVMESIRQLNPETQIEVLTPDFWGGKEREISQKQRVNTVVEAKPACYNHNIETVR 181

Query: 304 KS---MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
           +    + R         ++  ++ + P IA  S  ++G  GET+ +   T+  +  +   
Sbjct: 182 RLQGPVRRGANYQRSLNVLKWVKDLDPSIATKSGLMLG-HGETEAEILETLQDLRGVNCD 240

Query: 361 QAFSFKYS 368
           +    +Y 
Sbjct: 241 RLTLGQYM 248


>gi|218780003|ref|YP_002431321.1| cobalamin B12-binding domain protein [Desulfatibacillum
           alkenivorans AK-01]
 gi|218761387|gb|ACL03853.1| cobalamin B12-binding domain protein [Desulfatibacillum
           alkenivorans AK-01]
          Length = 501

 Score = 53.4 bits (127), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 54/312 (17%), Positives = 107/312 (34%), Gaps = 48/312 (15%)

Query: 92  NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR--- 148
              +K+     V+  G       E ++ R   V+ V+  +    LP LL+    G+    
Sbjct: 92  AGLVKQRSTAPVIFLGLHPTLSPEYVIGRD-GVDYVIEGEAEESLPALLDALEKGESPEN 150

Query: 149 -----------VVDTDYSVEDKFERLSIVDG--GYNRKRGVTAFL-TIQEGCDKFCTFC- 193
                      ++++        + L + D      R+R   ++   +  GC   CT+C 
Sbjct: 151 IAGLWRKDGGAIINSPPGPPVDLDALPLPDKDLFAPRERHDYSYAAMVSRGCPFSCTYCE 210

Query: 194 --VVPYTRGI--EISRSLSQVV-DEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS 248
              +    G      +S+  V+ +        G  E+          +   L G++   +
Sbjct: 211 ETCIKQKCGPKYFRRKSVKSVMAELTAARAKYGFREVIF--------KDSYLSGDEDWLA 262

Query: 249 DLLYSL-SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK-SM 306
            L+    S I+   +   T S   + +  L+K  G        +   +Q+ ++ I +  +
Sbjct: 263 RLMAEYKSRIRLPFKCFCTISGFTENTAMLLKQGG-----CYGIEFGLQTWNEAIRRDVL 317

Query: 307 NRRHTAYEYRQ---IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           NR+ T  + R+   + D  R     +    D +   PGE+ +D         K+ Y    
Sbjct: 318 NRKETNAQAREVFGLCDAWR-----LRYDVDHMFNLPGESANDHVLGAREYKKLKYLNRI 372

Query: 364 SFKYSP-RLGTP 374
              Y     G P
Sbjct: 373 KVHYLVYLPGAP 384


>gi|117620055|ref|YP_854800.1| coproporphyrinogen III oxidase [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117561462|gb|ABK38410.1| oxygen-independent coproporphyrinogen III oxidase [Aeromonas
           hydrophila subsp. hydrophila ATCC 7966]
          Length = 457

 Score = 53.4 bits (127), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 82/222 (36%), Gaps = 18/222 (8%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEI--TLLGQNVNAWRGKGLDGE 243
           C K C +C           +   Q +D   + I          L+ Q ++   G     +
Sbjct: 62  CHKLCYYCGCNKVITRHRHK-ADQYLDFLEQEIKAQAPLFKQRLVTQ-LHWGGGTPTYLD 119

Query: 244 KCTFSDLLYSLSE-----IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
           +     L+  L E      +G + +      PR++   ++    ++      + L VQ  
Sbjct: 120 EPQTRRLMAMLREHFHFAEEGEISIEV---DPREIELSMLDVLREIG--FNRISLGVQDF 174

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS-DFIVGFPGETDDDFRATMDLVDKI 357
           +  +  ++NR       R +++R R +      ++ D I G P +  + F  T++ V K 
Sbjct: 175 NKEVQVAVNREQDNDFIRAMLERAREL--GFRSTNLDLIYGLPHQNRESFHHTLEEVLKT 232

Query: 358 GYAQAFSFKYSPRL-GTPGSNMLEQVDENVKAERLLCLQKKL 398
             A+   F Y+         + L++ D     E+L  LQ  +
Sbjct: 233 DPARLSIFNYAHLPSRFAAQHKLKEADMPAPQEKLAMLQDTI 274


>gi|58332164|ref|NP_001011234.1| lipoic acid synthetase [Xenopus (Silurana) tropicalis]
 gi|56556281|gb|AAH87803.1| lipoic acid synthetase [Xenopus (Silurana) tropicalis]
          Length = 327

 Score = 53.4 bits (127), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 32/188 (17%), Positives = 63/188 (33%), Gaps = 19/188 (10%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V   R         +  + A+ + D G+  + L   + +     G +    
Sbjct: 137 CTRGCRFCSVKTARNPP-PLDPDEPFNTAKAIADWGLDYVVLTSVDRDDISDGGAEHIAK 195

Query: 246 TFSDLLYS-----LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300
           T S L        +  +    R           S   +  +      +P L    +   D
Sbjct: 196 TVSLLKERNQTILIECLTPDFRGNLKAVETVAGSG--LDVYAHNVETVPALQ---RHVRD 250

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
                   R    +   ++   ++VRP++   +  ++G  GETD+   +TM  + + G  
Sbjct: 251 P-------RANFDQSVNVLKHAKNVRPELISKTSIMLGL-GETDEQIYSTMKALREAGVD 302

Query: 361 QAFSFKYS 368
                +Y 
Sbjct: 303 CLTLGQYM 310


>gi|332886150|gb|EGK06394.1| TIGR01212 family radical SAM protein [Dysgonomonas mossii DSM
           22836]
          Length = 307

 Score = 53.4 bits (127), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 39/202 (19%), Positives = 67/202 (33%), Gaps = 13/202 (6%)

Query: 188 KFCTFCV----VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
             CT+C      P   G + S S    + +          E+  L            D  
Sbjct: 42  GGCTYCNNQSFSPGYGGKQRSVS--DQLRDGIAFFSYKYPEMKYLA--YFQSYTNTYDSI 97

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL-DVLMPYLHLPVQSGSDRI 302
           +        +LS     V      + P  M D L+    +L       +   ++S  D  
Sbjct: 98  EKLIELYEEALS--YPNVVGLIIGTRPDCMPDELLDYFAELNKRTFLIIEYGLESTLDST 155

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           L+ +NR HT  E  + I  +++    I   +  I+G P E+ +   A  D+V K+     
Sbjct: 156 LQFINRGHTHQESEEAI--LKTAAKGIYTGAHLILGLPHESREQVLAHADVVAKLPLTTI 213

Query: 363 FSFKYSPRLGTPGSNMLEQVDE 384
              +     GT  +    +  E
Sbjct: 214 KLHQLQLIKGTVMARQYREHPE 235


>gi|269139995|ref|YP_003296696.1| lipoate synthase [Edwardsiella tarda EIB202]
 gi|267985656|gb|ACY85485.1| lipoate synthase [Edwardsiella tarda EIB202]
          Length = 315

 Score = 53.4 bits (127), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 30/183 (16%), Positives = 62/183 (33%), Gaps = 12/183 (6%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V    G  ++   ++    A+ + D G+  + +   +    R    DG   
Sbjct: 88  CTRRCPFCDV--AHGRPLAPDANEPEKLAQTIADMGLRYVVVTSVD----RDDLRDGGAQ 141

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL-K 304
            F+D + ++      +R+       R   D  +    D    +          +   L +
Sbjct: 142 HFADCIRAIRAKSPQIRIETLVPDFRGRMDRALALLQDNPPDV----FNHNLENIPRLYR 197

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
            +          +++ + +   P I   S  +VG  GET+ +    M  +   G      
Sbjct: 198 QVRPGANYEWSLRLLQQFKQQHPQIPTKSGLMVGL-GETNQEIIEVMRDLRAHGVTMLTL 256

Query: 365 FKY 367
            +Y
Sbjct: 257 GQY 259


>gi|257468907|ref|ZP_05633001.1| coproporphyrinogen III oxidase [Fusobacterium ulcerans ATCC 49185]
 gi|317063155|ref|ZP_07927640.1| oxygen-independent coproporphyrinogen III oxidase [Fusobacterium
           ulcerans ATCC 49185]
 gi|313688831|gb|EFS25666.1| oxygen-independent coproporphyrinogen III oxidase [Fusobacterium
           ulcerans ATCC 49185]
          Length = 467

 Score = 53.4 bits (127), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 43/268 (16%), Positives = 89/268 (33%), Gaps = 29/268 (10%)

Query: 186 CDKFCTFCVV-PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK 244
           C   C +C    Y     + R     V+   + I+     +   G  + +    G     
Sbjct: 153 CPTKCKYCSFASYEINGGVGRYYKGFVETLLEEIEMAGKFLKDEGYKIESIYIGGGTPST 212

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY----LHLPVQSGSD 300
            T  DL   L ++   + + Y      +           L+++  Y    + L  Q+ ++
Sbjct: 213 LTEEDLEKVLRKVNENIDMTYLKEFTFEAGREDSLTEKKLELVKQYGADRISLNPQTFNE 272

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
             L+ +NR      + +     + +     I+ D I+G P ET +D   T++ V+K    
Sbjct: 273 ETLRKVNRNFNRENFDKYFKIAKEM--GFIINMDLIIGLPDETTEDVLHTLNEVEKYDIE 330

Query: 361 QAFSFKYSPRLGTPGSNM------LEQVDENVKAERLLCLQK-KLREQQVSFNDACVGQI 413
                          S +       +++D  +  +R+  L + K  +    +    +   
Sbjct: 331 NLTVHS---LAFKRASKLFKEDKSRKELDREIIEKRIRELTEKKQMKPYYMYRQKNI--- 384

Query: 414 IEVLIEKHGKEKGKLVGRSPWLQSVVLN 441
                     E G+ VG +   +  V N
Sbjct: 385 ---------MEWGENVGYAKEGKESVFN 403


>gi|257062169|ref|YP_003140057.1| radical SAM protein [Cyanothece sp. PCC 8802]
 gi|256592335|gb|ACV03222.1| Radical SAM domain protein [Cyanothece sp. PCC 8802]
          Length = 537

 Score = 53.4 bits (127), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 53/267 (19%), Positives = 106/267 (39%), Gaps = 23/267 (8%)

Query: 177 TAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR 236
              + +   C + C FC+  Y      + SL   +  A +        I LLG +V    
Sbjct: 223 IYMVEVVRSCPEMCRFCLASYLTLPFRTASLESSLIPAIEKGLTVTNRIGLLGASVTQH- 281

Query: 237 GKGLDGEKCTFSDLLYSLSEIK-GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPV 295
                     F  LL  L++ K   VR+   +     +++ L +   +       + + V
Sbjct: 282 --------PEFESLLDYLAQSKYDDVRVSIASVRTNTVTEKLAQILTN--RGTRSITIAV 331

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
           +SGSD++ + +N++ T  E  +     +       +    +VG PGE D D   T+ +++
Sbjct: 332 ESGSDKLRQIINKKLTNDEIIEAAINAKKGG-LKGLKLYGMVGIPGEEDSDIEQTIMMLE 390

Query: 356 KIGYA------QAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFN-DA 408
            +  A            + P+  TP       V++    +RL  L+K+L ++ + F  ++
Sbjct: 391 SVKKAASGLKITFGCSTFVPKSHTPFQWFG--VNQE-AQKRLKYLEKQLGKKGIDFRPES 447

Query: 409 CVGQIIEVLIEKHGKEKGKLVGRSPWL 435
               +I+ LI +  +   KL+  +   
Sbjct: 448 YNWSVIQALISRGDRRLSKLLELTRNY 474


>gi|73668482|ref|YP_304497.1| hypothetical protein Mbar_A0945 [Methanosarcina barkeri str.
           Fusaro]
 gi|72395644|gb|AAZ69917.1| conserved hypothetical protein [Methanosarcina barkeri str. Fusaro]
          Length = 657

 Score = 53.4 bits (127), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 46/262 (17%), Positives = 82/262 (31%), Gaps = 33/262 (12%)

Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSLS 208
           +D  Y +    E              V   LT   GC   C FC +   +G  I SRS+ 
Sbjct: 329 MDHVYELPFTGETHPSYTEPVPALEMVKFSLTTHRGCFGGCAFCAITEHQGRMIASRSIE 388

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD----GEKCTFSDLLYSLSEI------- 257
            V+ EA+KL +    +  + G    +    G++    G+K    D       I       
Sbjct: 389 SVLREAKKLTEKPDFKGIINGVGGPSANMYGMECKTWGKKGACLDKSCLYPRICPALDTS 448

Query: 258 --------------KGLVRLRYTTSHPRDMSDCLIKAHGDL--DVLMPYLHLPVQSGSDR 301
                          G+  +        D++    +  G+L    +   L +  +  S +
Sbjct: 449 HKKLLELLRRLRELPGVRHVFTGYGVRYDLALKDEEYLGELCAYHISGQLRIAPEHFSRQ 508

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIA----ISSDFIVGFPGETDDDFRATMDLVDKI 357
           +   M +      Y +   +   +         I +  + G PG T +D     + V   
Sbjct: 509 VTNVMCKPG-REVYEKFTQKFTELNRKCGKEQYIVNYLMSGHPGCTLEDMIEMAEYVRDH 567

Query: 358 GYAQAFSFKYSPRLGTPGSNML 379
           G        ++P   T  + M 
Sbjct: 568 GGYTEQVQDFTPTPMTVSTCMY 589


>gi|28211010|ref|NP_781954.1| biotin synthase [Clostridium tetani E88]
 gi|28203449|gb|AAO35891.1| biotin synthetase [Clostridium tetani E88]
          Length = 349

 Score = 53.4 bits (127), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 34/248 (13%), Positives = 82/248 (33%), Gaps = 29/248 (11%)

Query: 137 PELLERARFGKRVVDTDYSVEDKFERL------SIVDGGYNRKRGVTAFLTIQEGCDKFC 190
              +E     + +V+   + ++   +          +     +  +   +     C   C
Sbjct: 9   KAYVESNLSQEEIVEILKNKDEYNIKYLFNKAEETTEKYCGHEVNIRGIIEFSNYCRCNC 68

Query: 191 TFCVV-PYTRGIEISR-SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS 248
           ++C +     GI+  R S  ++V  A++  + G   + L         G+ L   +    
Sbjct: 69  SYCGLNVNNNGIKRYRMSKEEIVLVAKEAYEAGYKTLVLQS-------GEDLFYTREILC 121

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
           D++ S+ +I  +          ++      KA GD         +  ++    +   +++
Sbjct: 122 DIIKSIKKIGDIAITLSIGKRDKEDYRAFKKAGGDR------FLIKHETADKNLFSKLHK 175

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD---LVDKIGYAQAFSF 365
            +      Q +  ++ V       S F++G P     DF        L+ ++    A   
Sbjct: 176 GNKLENRIQALKDLKEV--GFQAGSGFMIGLP---LQDFNTLARDILLLKELDVDMAGIG 230

Query: 366 KYSPRLGT 373
            + P   T
Sbjct: 231 PFIPHPET 238


>gi|19553410|ref|NP_601412.1| lipoyl synthase [Corynebacterium glutamicum ATCC 13032]
 gi|62391048|ref|YP_226450.1| lipoyl synthase [Corynebacterium glutamicum ATCC 13032]
 gi|145296170|ref|YP_001138991.1| lipoyl synthase [Corynebacterium glutamicum R]
 gi|23821819|sp|Q8NNJ0|LIPA_CORGL RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|166226357|sp|A4QFS3|LIPA_CORGB RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|21324980|dbj|BAB99602.1| Lipoate synthase [Corynebacterium glutamicum ATCC 13032]
 gi|41326387|emb|CAF20549.1| LIPOIC ACID SYNTHASE [Corynebacterium glutamicum ATCC 13032]
 gi|140846090|dbj|BAF55089.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 348

 Score = 53.4 bits (127), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 45/258 (17%), Positives = 90/258 (34%), Gaps = 27/258 (10%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC++   R   + R   + +  A  + +  +   T+ G      R    D    
Sbjct: 81  CSRRCDFCMINSARPEPLDR--GEPLRVAESVREMQLNYSTITGVT----RDDLDDEGAW 134

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
            +S+++  + E+     +           D L +       +  +    V     RI K 
Sbjct: 135 LYSEVVRKIHELNPHTGVENLVPDFSGKKDLLQEVFESRPEVFAHNVETV----PRIFKR 190

Query: 306 MNRRHTAYEYRQIIDRIRSVRP-DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
           +     A+ Y + +D IR  R   +   S+ I+G  GET ++    +  +   G      
Sbjct: 191 IRP---AFRYERSLDVIRQARDFGLVTKSNLILGM-GETKEEITEALQDLHDAGCDIITI 246

Query: 365 FKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE 424
            +Y  R G     +   ++  VK E  L      +E  + F     G     L+ +    
Sbjct: 247 TQYL-RPG----PLFHPIERWVKPEEFLEHADAAKE--MGFAAVMSGP----LV-RSSYR 294

Query: 425 KGKLVGRSPWLQSVVLNS 442
            G+L  ++   +   + +
Sbjct: 295 AGRLYAQAMEFRGEEIPA 312


>gi|323704598|ref|ZP_08116176.1| Radical SAM domain protein [Thermoanaerobacterium xylanolyticum
           LX-11]
 gi|323536060|gb|EGB25833.1| Radical SAM domain protein [Thermoanaerobacterium xylanolyticum
           LX-11]
          Length = 358

 Score = 53.4 bits (127), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 31/253 (12%), Positives = 81/253 (32%), Gaps = 26/253 (10%)

Query: 132 TYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKR--------GVTAFLTIQ 183
            +  +  L+        +   D       E    +    +R R         +   + I 
Sbjct: 9   NHDHIKYLISYVENEHTLSKEDLITLLNSEYTDEICKAADRVRKKFVGDVVHLRGLIEIS 68

Query: 184 EGCDKFCTFCVVPYTRGIEISRSLSQ--VVDEARKLIDNGVCEITLLGQNVNAWRGKGLD 241
             C + C +C +           +++  ++  A+   D G+  + L G       G+   
Sbjct: 69  NYCCRTCYYCGLRVYNKSIKRYRMNENEILQCAKATKDAGLKTVVLQG-------GEDKY 121

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
            +     +++  + ++   + L       ++    L KA  D         L +++ +  
Sbjct: 122 FKIKDLCNIVEKIKDLDLSITLSIGELTTKEY-ADLKKAGADR------YLLRIETTNRD 174

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
           + K  +   +     + +  ++ +     + +  ++G PG+T D     +    +I    
Sbjct: 175 LYKKFHPNMSFDNRVRCLMDLKEL--GYEVGTGCLIGLPGQTLDMLAEDILFFKEIDADM 232

Query: 362 AFSFKYSPRLGTP 374
                + P   TP
Sbjct: 233 IGMGPFIPTPNTP 245


>gi|290462939|gb|ADD24517.1| Lipoyl synthase, mitochondrial [Lepeophtheirus salmonis]
          Length = 356

 Score = 53.4 bits (127), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 29/207 (14%), Positives = 70/207 (33%), Gaps = 9/207 (4%)

Query: 162 RLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNG 221
           R   +   +N +      + + + C + C FC V  +R         +    A+ +   G
Sbjct: 98  RCPNIGECWNGETSTATIMLMGDTCTRGCRFCSVKTSRAPPP-LDPDEPESTAQAVSSWG 156

Query: 222 VCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAH 281
           +  I L   +    R    D      +  +  L E+K  + +   +       D +    
Sbjct: 157 LDYIVLTSVD----RDDISDYGSSHMAQTVRRLKEVKPELMVEVLSPDFAGKEDFVRILA 212

Query: 282 GDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPG 341
                +  +    ++  +  + +    ++       ++   +   P++   S  ++G  G
Sbjct: 213 ASGLDVFAHNIETIERLTPFV-RDPRAKYRQS--LTVLKAAKKHVPNLVTKSSIMLGL-G 268

Query: 342 ETDDDFRATMDLVDKIGYAQAFSFKYS 368
           ETD++ R TM+ +           +Y 
Sbjct: 269 ETDEEIRQTMEDLRSANVDCLTLGQYM 295


>gi|218701980|ref|YP_002409609.1| putative Fe-S oxidoreductase [Escherichia coli IAI39]
 gi|218371966|emb|CAR19822.1| putative Fe-S oxidoreductase [Escherichia coli IAI39]
          Length = 309

 Score = 53.4 bits (127), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 43/237 (18%), Positives = 76/237 (32%), Gaps = 36/237 (15%)

Query: 181 TIQEGCDKFCTFCVV-PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
           TI  G    CTFC V  +    +  RS+++ +     L++     +              
Sbjct: 39  TIGRG---GCTFCNVASFADEAQQHRSIAEQLAHQANLVNRAKRYLAYF-----QAYTST 90

Query: 240 LDGEKCTFSDLLYSLSE--IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQS 297
               +   S    ++S+  I GL  +        D    L+  + D    + +L L +Q+
Sbjct: 91  FAEVQVLRSMYQQAVSQANIVGLC-VGTRPDCVPDAVLDLLCEYKDQGYEV-WLELGLQT 148

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
             D+ L  +NR H    Y+++    R     + + S  IVG PGE   +   T++ V + 
Sbjct: 149 AHDKTLHRINRGHDFACYQRMTQLARER--GLKVCSHLIVGLPGEGQAECLQTLERVVET 206

Query: 358 GYAQAFSFKYSPRLG---------------------TPGSNMLEQVDENVKAERLLC 393
           G             G                          M+      V   R+  
Sbjct: 207 GVDGIKLHPLHIVKGSIMAKAWEAGRLNGIELEDYTLTAGEMIRHTPPEVIYHRISA 263


>gi|218249082|ref|YP_002374453.1| Radical SAM domain-containing protein [Cyanothece sp. PCC 8801]
 gi|218169560|gb|ACK68297.1| Radical SAM domain protein [Cyanothece sp. PCC 8801]
          Length = 537

 Score = 53.4 bits (127), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 53/267 (19%), Positives = 106/267 (39%), Gaps = 23/267 (8%)

Query: 177 TAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR 236
              + +   C + C FC+  Y      + SL   +  A +        I LLG +V    
Sbjct: 223 IYMVEVVRSCPEMCRFCLASYLTLPFRTASLESSLIPAIEKGLTVTNRIGLLGASVTQH- 281

Query: 237 GKGLDGEKCTFSDLLYSLSEIK-GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPV 295
                     F  LL  L++ K   VR+   +     +++ L +   +       + + V
Sbjct: 282 --------PEFESLLDYLAQSKYDDVRVSIASVRTNTVTEKLAQILTN--RGTRSITIAV 331

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
           +SGSD++ + +N++ T  E  +     +       +    +VG PGE D D   T+ +++
Sbjct: 332 ESGSDKLRQIINKKLTNDEIIEAAINAKKGG-LKGLKLYGMVGIPGEEDSDIEQTIMMLE 390

Query: 356 KIGYA------QAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFN-DA 408
            +  A            + P+  TP       V++    +RL  L+K+L ++ + F  ++
Sbjct: 391 SVKKAASGLKITFGCSTFVPKSHTPFQWFG--VNQE-AQKRLKYLEKQLGKKGIDFRPES 447

Query: 409 CVGQIIEVLIEKHGKEKGKLVGRSPWL 435
               +I+ LI +  +   KL+  +   
Sbjct: 448 YNWSVIQALISRGDRRLSKLLELTRNY 474


>gi|283787467|ref|YP_003367332.1| oxygen-independent coproporphyrinogen III oxidase [Citrobacter
           rodentium ICC168]
 gi|282950921|emb|CBG90598.1| oxygen-independent coproporphyrinogen III oxidase [Citrobacter
           rodentium ICC168]
          Length = 457

 Score = 53.4 bits (127), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 38/248 (15%), Positives = 80/248 (32%), Gaps = 20/248 (8%)

Query: 173 KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS---RSLSQVVDEARKLI----DNGVCEI 225
           +R ++ ++ I   C K C FC        +     R L  +  E R          V ++
Sbjct: 50  ERPLSLYVHIPF-CHKLCYFCGCNKIVTRQQHKADRYLDALEQEIRHRAPLFKGRQVSQL 108

Query: 226 TLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLD 285
              G          +        D     ++ +           PR++   ++       
Sbjct: 109 HWGGGTPTYLNKAQISRLMTLLRDNFRFNADAE-----ISIEVDPREIELDVLDHLRAEG 163

Query: 286 VLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS-DFIVGFPGETD 344
                L + VQ  +  + + +NR         ++   R +      ++ D I G P +T 
Sbjct: 164 --FNRLSMGVQDFNKEVQRLVNREQDEEFIFALLRHARDI--GFTSTNIDLIYGLPKQTP 219

Query: 345 DDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQV 403
           + F  T+  V ++   +   F Y+       +   ++  D     ++L  LQ+ +     
Sbjct: 220 ESFAFTLKKVAELNPDRLSVFNYAHLPTLFAAQRKIKDADLPGAQQKLDILQQTIASLTE 279

Query: 404 SFNDACVG 411
           S     +G
Sbjct: 280 SGYQ-FIG 286


>gi|251772873|gb|EES53432.1| Lipoate synthase [Leptospirillum ferrodiazotrophum]
          Length = 304

 Score = 53.4 bits (127), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 39/209 (18%), Positives = 72/209 (34%), Gaps = 10/209 (4%)

Query: 161 ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN 220
           E  S  + G   + GV   + +   C + C FC V    G        +    AR   + 
Sbjct: 56  EEASCPNLGSCFREGVATIMILGRVCTRACPFCDV--DHGRPAPPDPDEPERVARMASET 113

Query: 221 GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKA 280
           G+  + +   +    R    DG    F++++ +L      V +        D   CL KA
Sbjct: 114 GIRYLVVTSVD----RDDLADGGAGHFAEVVKALRRRLPSVGVEILVP---DFRHCLDKA 166

Query: 281 HGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFP 340
              L  ++P +         R+   +           ++ R  ++ P   + S  +VG  
Sbjct: 167 LPVLGTILPTVFNHNLETVPRLYGRVRPGADYRHSLSLLSRFSALSPGTPVKSGIMVGM- 225

Query: 341 GETDDDFRATMDLVDKIGYAQAFSFKYSP 369
           GE  D+    +  + + G       +Y P
Sbjct: 226 GERRDEIEEVLRDMREAGVTMVTVGQYLP 254


>gi|237807391|ref|YP_002891831.1| hypothetical protein Tola_0616 [Tolumonas auensis DSM 9187]
 gi|237499652|gb|ACQ92245.1| conserved hypothetical protein [Tolumonas auensis DSM 9187]
          Length = 308

 Score = 53.4 bits (127), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 47/121 (38%), Gaps = 12/121 (9%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +L L +QS     LK +NR H    Y   ++R R+   ++ I +  IVG P E +D+  +
Sbjct: 141 WLELGLQSAHAATLKRINRGHDYSAYADAVERARAR--NLKICTHLIVGLPEEGNDECLS 198

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDAC 409
           T+  V   G             G+  +          KA R   LQ   +++        
Sbjct: 199 TLQQVVATGTDGIKLHPLHVVEGSTMA----------KAWRAGRLQTLSQKEYAEIAANM 248

Query: 410 V 410
           +
Sbjct: 249 I 249


>gi|325499165|gb|EGC97024.1| coproporphyrinogen III oxidase [Escherichia fergusonii ECD227]
          Length = 457

 Score = 53.4 bits (127), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 42/256 (16%), Positives = 88/256 (34%), Gaps = 29/256 (11%)

Query: 157 EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS-------LSQ 209
           ED  E+  +       +R ++ ++ I   C K C FC        +  ++         +
Sbjct: 34  EDFGEQAFLQAVARYPERPLSLYVHIPF-CHKLCYFCGCNKIVTRQQHKADQYLDALEQE 92

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE-----IKGLVRLR 264
           +V  A       V ++   G       G      K   S L+  L E         + + 
Sbjct: 93  IVHRAPLFTRRKVSQLHWGG-------GTPTYLNKAQISRLMKLLRENFQFNTDAEISIE 145

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
                PR++   ++            L + VQ  +  + + +NR         +++  R 
Sbjct: 146 V---DPREIELDVLDHLRAEG--FNRLSMGVQDFNKEVQRLVNREQDEEFIFALLNHARE 200

Query: 325 VRPDIAISS-DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQV 382
           +      ++ D I G P +T + F  T+  V ++   +   F Y+       +   ++  
Sbjct: 201 I--GFTSTNIDLIYGLPKQTPESFAFTLKRVAELNPDRLSVFNYAHLPTIFAAQRKIKDA 258

Query: 383 DENVKAERLLCLQKKL 398
           D     ++L  LQ+ +
Sbjct: 259 DLPSPQQKLDILQETI 274


>gi|319404091|emb|CBI77679.1| lipoic acid synthetase [Bartonella rochalimae ATCC BAA-1498]
          Length = 318

 Score = 53.4 bits (127), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 31/194 (15%), Positives = 72/194 (37%), Gaps = 11/194 (5%)

Query: 174 RGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVN 233
           +   +F+ + E C + C FC V    GI  +   ++    A  ++   +  + +   +  
Sbjct: 73  KRHASFMILGEICTRACAFCNV--ATGIPFAVDDNEPERIADAVVQMELKHVVITSVD-- 128

Query: 234 AWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHL 293
             R    DG    F+ ++Y++ +      +   T   R+    L         +  +   
Sbjct: 129 --RDDLSDGGAQHFAKVIYAIRQKAPTTTIEVLTPDFRNKDGALEIVVAAKPDVFNH--- 183

Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
            +++   + LK +      +   +++ R++ + P I   S  +VG  GE  ++    MD 
Sbjct: 184 NLETVPSKYLK-VRPGARYFHSIRLLQRVKELDPTIFTKSGIMVGL-GEERNEVLQLMDD 241

Query: 354 VDKIGYAQAFSFKY 367
           +           +Y
Sbjct: 242 LRSADVDFMTIGQY 255


>gi|213417296|ref|ZP_03350440.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica
           serovar Typhi str. E01-6750]
          Length = 443

 Score = 53.4 bits (127), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 40/248 (16%), Positives = 87/248 (35%), Gaps = 20/248 (8%)

Query: 173 KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEI--TLLGQ 230
           +R ++ ++ I   C K C FC        +  +   Q +D   + I +         + Q
Sbjct: 50  ERPLSLYVHIPF-CHKLCYFCGCNKIVTRQQHK-ADQYLDALEQEIRHRAPLFADRHVSQ 107

Query: 231 NVNAWRGKGLDGEKCTFSDLLYSLSE-----IKGLVRLRYTTSHPRDMSDCLIKAHGDLD 285
            ++   G      K   S L+  L E         + +      PR++   ++       
Sbjct: 108 -LHWGGGTPTYLNKAQISRLMTLLRENFHFNTDAEISIEV---DPREIELDVLDHLRAEG 163

Query: 286 VLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS-DFIVGFPGETD 344
                L + VQ  +  + + +NR         +++  R +      ++ D I G P +T 
Sbjct: 164 --FNRLSMGVQDFNKEVQRLVNREQDEEFIFALLNHARDI--GFTSTNIDLIYGLPKQTP 219

Query: 345 DDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQV 403
           + F  T+  V ++   +   F Y+       +   ++  D     ++L  LQ+ +     
Sbjct: 220 ESFAFTLKRVTELNPDRLSVFNYAHLPTLFAAQRKIKDADLPSAQQKLDILQETIVSLTQ 279

Query: 404 SFNDACVG 411
           +     +G
Sbjct: 280 AGYQ-FIG 286


>gi|223935942|ref|ZP_03627857.1| oxygen-independent coproporphyrinogen III oxidase [bacterium
           Ellin514]
 gi|223895543|gb|EEF61989.1| oxygen-independent coproporphyrinogen III oxidase [bacterium
           Ellin514]
          Length = 389

 Score = 53.4 bits (127), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 36/224 (16%), Positives = 76/224 (33%), Gaps = 20/224 (8%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C   C++C            S +   +   + +   + E+ ++  ++   R     G   
Sbjct: 20  CAHKCSYCAF---------YSEASNGEIINRYVCALIRELEMVASDL-KPRTIFFGGGTP 69

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL-----HLPVQSGSD 300
           +  +L      ++ + RL  T +    +         +   L+         + VQS  +
Sbjct: 70  SLLNLRQWEQILQTMQRLGLTGAAEWTVECNPATVSLEKAKLLRSFGVNRISMGVQSLDE 129

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
            +L  + R H+     +  D +R+   D  ++ D +   PG+T   +R T+     +G  
Sbjct: 130 NLLDRLGRIHSREMVFKSFDTLRAAGFD-NVNIDLMFAIPGQTMKIWRDTLAEATALGSE 188

Query: 361 QAFSFKYSPRLGTPGSNMLE----QVDENVKAERLLCLQKKLRE 400
              S++      TP    L+     VDE +       L      
Sbjct: 189 HLSSYEVIYEDDTPLYAQLKAGEFDVDEALACAMYEELVTVASA 232


>gi|156049469|ref|XP_001590701.1| hypothetical protein SS1G_08441 [Sclerotinia sclerotiorum 1980]
 gi|154692840|gb|EDN92578.1| hypothetical protein SS1G_08441 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 417

 Score = 53.4 bits (127), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 43/200 (21%), Positives = 73/200 (36%), Gaps = 28/200 (14%)

Query: 185 GCDKFCTFCV--VPYTRGIEISR--SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL 240
           GC + C++C     Y  G++ S+  S+  V+  AR   DNG     +          + +
Sbjct: 120 GCSEDCSYCAQSSRYQTGLKASKMVSVESVLAAARIAKDNGSTRFCMGA------AWRDM 173

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMS--DCLIKAHGDLDVLMPYLHLPVQSG 298
            G K    ++   +SEI+G+      T    D      L +A                  
Sbjct: 174 RGRKTNLKNVKTMVSEIRGMGMEVCVTLGMIDAEQAQELKEA----------GLTAYNHN 223

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVR-PDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
            D       +  T   Y + +D I++VR   I + +  I+G  GE   D    ++ V  +
Sbjct: 224 VDTSRDFYPKVITTRTYDERLDTIKNVREAGINVCTGGILGL-GENKSDHIGLLETVATL 282

Query: 358 GYAQAFSFKYSPR---LGTP 374
             +   SF  +      GTP
Sbjct: 283 P-SHPESFPVNMLVAIKGTP 301


>gi|83312196|ref|YP_422460.1| Fe-S oxidoreductase [Magnetospirillum magneticum AMB-1]
 gi|82947037|dbj|BAE51901.1| Fe-S oxidoreductase [Magnetospirillum magneticum AMB-1]
          Length = 668

 Score = 53.4 bits (127), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 77/229 (33%), Gaps = 44/229 (19%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDNGVCEI----TLLGQNVNA 234
           + I  GC   C+FC +    G  I SRS   ++ E  ++ D           L G   N 
Sbjct: 332 INIVRGCFGGCSFCSITEHEGRIIQSRSADSIIHEIEEIRDKTKGFTGTISDLGGPTANM 391

Query: 235 WR----------------------GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
           WR                       K L  +      L  +   +KG+ R+   +    D
Sbjct: 392 WRLGCREPEVQKVCRRLSCVYPDICKTLGTDHDPLIRLYRAARGVKGVKRVNIGSGVRYD 451

Query: 273 M-------SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR--HTAYEYRQIIDRIR 323
           +        D L++ H     +  YL +  +   D  L  M +    +   ++ + ++  
Sbjct: 452 LAVTSPAYVDELVRHH-----VGGYLKIAPEHTEDGPLSKMMKPGIGSYERFKDMFEKAA 506

Query: 324 -SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY--AQAFSFKYSP 369
                 + +   FI   PG +D D       + K G+   Q  +F  +P
Sbjct: 507 VKAGKKLYLIPYFIAAHPGTSDQDMLNLALWLKKNGFRLDQVQTFLPTP 555


>gi|330505010|ref|YP_004381879.1| lipoyl synthase [Pseudomonas mendocina NK-01]
 gi|328919296|gb|AEB60127.1| lipoyl synthase [Pseudomonas mendocina NK-01]
          Length = 350

 Score = 53.4 bits (127), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 32/182 (17%), Positives = 68/182 (37%), Gaps = 9/182 (4%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V           L +  + A+ +    +  I L   +    R    DG   
Sbjct: 99  CTRACRFCAVDTGNPNGW-LDLEEPQNTAKSVELMALRYIVLTSVD----RDDLEDGGAG 153

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
            ++  + ++ E    V +   T    D     I+   D  + +   ++        +++ 
Sbjct: 154 HYAACVRAIKENTPQVVVEALTPDF-DGDHQAIERVVDSGLEVFAQNVETVKRLTHVVRD 212

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
               +   +  ++++  +  RPD+   +  ++G  GETD++   TMD +  IG       
Sbjct: 213 PRAGY--EKTLKVLEHAKKHRPDVLTKTSLMLGL-GETDEEIIETMDDLRAIGVDILTLG 269

Query: 366 KY 367
           +Y
Sbjct: 270 QY 271


>gi|260773474|ref|ZP_05882390.1| hypothetical protein VIB_001944 [Vibrio metschnikovii CIP 69.14]
 gi|260612613|gb|EEX37816.1| hypothetical protein VIB_001944 [Vibrio metschnikovii CIP 69.14]
          Length = 313

 Score = 53.4 bits (127), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 2/88 (2%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +L L +Q+ ++  LK +NR H    Y+ I  R R++   I I +  IVG P ET  D  A
Sbjct: 141 WLELGLQTANNSTLKRINRGHDFDCYQSIAQRARAL--GIKICTHLIVGLPKETASDNVA 198

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
           T+  V ++G             G+  + 
Sbjct: 199 TLQQVVEVGTDGIKLHGLHIVDGSTMAK 226


>gi|268589773|ref|ZP_06123994.1| radical SAM protein [Providencia rettgeri DSM 1131]
 gi|291314928|gb|EFE55381.1| radical SAM protein [Providencia rettgeri DSM 1131]
          Length = 300

 Score = 53.4 bits (127), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 37/192 (19%), Positives = 67/192 (34%), Gaps = 10/192 (5%)

Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTF 247
             CTFC V        S     + ++  + I         L      ++       + + 
Sbjct: 43  GGCTFCNVASFADESQS--SHTISEQIHQQITRISRAKRYLA----YFQAYTSTYAEVSL 96

Query: 248 SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKS 305
              LY  + ++  +      + P  + + ++   G         +L L +QS  D+ L  
Sbjct: 97  LKQLYEEALLQADIVGLCVGTRPDCVPESVLSLLGQYQQKGYEIWLELGLQSAHDKTLHR 156

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           +NR H  Y YRQ   + RS+   + + +  I G PGE       T+D V + G       
Sbjct: 157 INRGHGFYAYRQTTQKARSL--GLKVCTHLICGLPGENGQMNMETLDKVLECGTDGIKLH 214

Query: 366 KYSPRLGTPGSN 377
                 G+  + 
Sbjct: 215 PLHIVEGSVMAK 226


>gi|254512796|ref|ZP_05124862.1| lipoic acid synthetase [Rhodobacteraceae bacterium KLH11]
 gi|221532795|gb|EEE35790.1| lipoic acid synthetase [Rhodobacteraceae bacterium KLH11]
          Length = 314

 Score = 53.4 bits (127), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 42/277 (15%), Positives = 90/277 (32%), Gaps = 20/277 (7%)

Query: 116 EILRRSPI-----VNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGY 170
           ++  R P       +V+     + R  ++   A +  R +  D+++    E  +  + G 
Sbjct: 4   QLRPRHPEKAKKADSVIPRKPKWIRKKKVEGEAYYETRRLMRDHNLATVCEEAACPNIGE 63

Query: 171 NRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQ 230
              +     + + E C + C+FC V   R   +   + +    A  +   G+  + +   
Sbjct: 64  CWSKRHATMMIMGEVCTRGCSFCNVSTGRPDAL--DVFEPGRVAAAVKKLGLRHVVITSV 121

Query: 231 NVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY 290
           +    R    DG     +  + ++        +   T       D           +  +
Sbjct: 122 D----RDDLADGGAEHIAQTIRAVRHQNPGTTVEVLTPDFLGKGDAADLVFDAAPDVFNH 177

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
               V      +      R+      +++D  +   P+I   S  +VG  GET  D R  
Sbjct: 178 NLETVPHLYPTV--RPGARYYTS--LRLLDDAKRANPEIFTKSGLMVGL-GETLTDVRQV 232

Query: 351 MDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ--VDEN 385
           MD +           +Y     TP  + +++    E 
Sbjct: 233 MDDLRAAQVDFLTIGQY--LQPTPKHHPIDRFWTPEE 267


>gi|168187501|ref|ZP_02622136.1| oxygen-independent coproporphyrinogen III oxidase 2 [Clostridium
           botulinum C str. Eklund]
 gi|169294596|gb|EDS76729.1| oxygen-independent coproporphyrinogen III oxidase 2 [Clostridium
           botulinum C str. Eklund]
          Length = 480

 Score = 53.4 bits (127), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 59/327 (18%), Positives = 119/327 (36%), Gaps = 30/327 (9%)

Query: 126 VVVGPQTYYRLPELLERARFGKRVV----DTDYSVEDKFE-RLSIVDGGYNRKRGVTAFL 180
           +++G +    + ++++     +++     +  ++  DK E  ++I      R       +
Sbjct: 92  ILIGIRPTKIVLDMMDDGFSEEQITLTLQNEYFARLDKAELCINIAKAERARVNKEPKNI 151

Query: 181 TIQEG---CDKFCTFCVVPY--TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW 235
           +I  G   C   C +C        G   S+ +   +++  + ID     I     N+   
Sbjct: 152 SIYIGMPFCPTTCLYCSFASNPIGGRNTSKMVEPYLEKLNEEIDIIKEFIDKRELNIECV 211

Query: 236 R---GKGLDGEKCTFSDLLYSLSE--IKGLVRLRYTTSHPRD--MSDCLIKAHGDLDVLM 288
               G      +  F +L+  + E  I G     +     R   +++  +K     +  +
Sbjct: 212 YFGGGTPTSVNENQFENLIKKVHESFISGRKVKEFNVECGRPDSITEGKLKTMKKYN--V 269

Query: 289 PYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFR 348
             + +  Q+ ++  LK + R HT  +  +     R +  D  I+ D IVG P ET     
Sbjct: 270 SRISINPQTMNEDTLKLIGRHHTVKDISEKFKLARKLGFD-NINMDIIVGLPNETLSHIE 328

Query: 349 ATMDLVDKIGYAQAFSFKYSPRLGTPGS--------NMLEQVDENVKAERLLCLQKKLRE 400
            T   + K+          S + G+            +LEQ   N   +R   L ++L  
Sbjct: 329 TTCTEILKLNPDSLTVHGMSIKRGSKLYEEIYIDKVRILEQNSLNEMYKRTSKLAEELNM 388

Query: 401 Q--QVSFNDACVGQIIEVLIEKHGKEK 425
           +   +      VG +  V   +HGKE 
Sbjct: 389 KPYYMYRQKNMVGHMENVGYCRHGKEG 415


>gi|167762663|ref|ZP_02434790.1| hypothetical protein BACSTE_01020 [Bacteroides stercoris ATCC
           43183]
 gi|167699003|gb|EDS15582.1| hypothetical protein BACSTE_01020 [Bacteroides stercoris ATCC
           43183]
          Length = 546

 Score = 53.4 bits (127), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 50/259 (19%), Positives = 91/259 (35%), Gaps = 30/259 (11%)

Query: 99  GDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ---------TYYRLPELLERARFGKRV 149
               +++ G       E  LR+ P V+ V   +         T +  PEL      G   
Sbjct: 84  PKACLILGGPEFLGNNELFLRKYPFVDCVFRGEGEEVFPQWLTCWNQPELWNDI-AGLCY 142

Query: 150 VDTDYSVEDK-------FERLSIVD-GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           +DTD    D        F RL   +   +         L    GC   C FC V      
Sbjct: 143 LDTDKQYRDNGTARVLNFSRLIPPEKSCFFNWDKPFVQLETTRGCFNTCAFC-VSGGEKP 201

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
             + S+  +    + + ++G+  I +L +  N               +LL    E   + 
Sbjct: 202 IRTLSIENIRQRLQTIHEHGIKNIRVLDRTFNY--------NTHRAKELLQLFLEYPDIH 253

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
              +   HP  +S+ L +    L   + +L   +QS  + +L+  +R     +  + +  
Sbjct: 254 --FHLEIHPALLSEELKEELKQLPQGLLHLEAGIQSLREPVLEQSHRMGKLSDALKGLKF 311

Query: 322 IRSVRPDIAISSDFIVGFP 340
           + S+ P++   +D I G P
Sbjct: 312 LCSL-PNMETHADLIAGLP 329


>gi|121593341|ref|YP_985237.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Acidovorax sp. JS42]
 gi|222110070|ref|YP_002552334.1| oxygen-independent coproporphyrinogen iii oxidase [Acidovorax
           ebreus TPSY]
 gi|120605421|gb|ABM41161.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Acidovorax sp. JS42]
 gi|221729514|gb|ACM32334.1| oxygen-independent coproporphyrinogen III oxidase [Acidovorax
           ebreus TPSY]
          Length = 414

 Score = 53.4 bits (127), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 26/164 (15%), Positives = 55/164 (33%), Gaps = 15/164 (9%)

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY-------LHLP 294
           G    F+    S+  + G +R R       +++        + +    Y       L + 
Sbjct: 101 GTPSLFA--PESIDRLLGDIRARLRLDAGCEITLEANPGTFEKERFRAYRGAGVTRLSIG 158

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           VQS +DR L+++ R H   +    ++           + D +   PG+T  +    M   
Sbjct: 159 VQSFNDRHLQALGRVHNRAQALAAVEEAAQAFD--TFNLDIMYALPGQTPAELDEDMRTA 216

Query: 355 DKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA----ERLLCL 394
             +       +  +    T  +     + E+  A    +R+  L
Sbjct: 217 LALQPPHISIYHLTIEPNTYFAKYPPPLPEDDAAYAMLDRITEL 260


>gi|16329864|ref|NP_440592.1| coproporphyrinogen III oxidase [Synechocystis sp. PCC 6803]
 gi|2493814|sp|P73245|Y1917_SYNY3 RecName: Full=Oxygen-independent coproporphyrinogen-III
           oxidase-like protein sll1917
 gi|1652349|dbj|BAA17272.1| oxygen independent coprophorphyrinogen III oxidase [Synechocystis
           sp. PCC 6803]
          Length = 412

 Score = 53.4 bits (127), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 75/224 (33%), Gaps = 13/224 (5%)

Query: 175 GVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS----QVVDEARKLIDNGVCEITLLGQ 230
              A++ I   C + C +C  P       S +L     + V+   + I     +   L Q
Sbjct: 9   PTAAYIHIPF-CRQRCFYCDFPIAVTGFQSLTLDGWVGEYVEAVCREIAGQQHQGQPL-Q 66

Query: 231 NVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY 290
            V    G            +L ++ +  G+      +      +   ++  G  ++ +  
Sbjct: 67  TVFFGGGTPSLLPITGLEKILLAVDQYLGIAPDAEISIEIDPGTFDQVQLQGYKNLGINR 126

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS-DFIVGFPGETDDDFRA 349
             L VQ+  D +L    R H   +  Q +  I   + +I   S D I G P +T  D+ +
Sbjct: 127 FSLGVQAFQDNLLALCGRHHRRRDIDQALTAI--AKENIENWSLDLITGLPEQTAADWHS 184

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ----VDENVKAE 389
           ++ L    G      +       T      ++    V    ++ 
Sbjct: 185 SLTLALAAGPKHISCYDLVLEPQTVFDKWEQRGKLAVPPPERSA 228


>gi|46201798|ref|ZP_00208251.1| COG1032: Fe-S oxidoreductase [Magnetospirillum magnetotacticum
           MS-1]
          Length = 629

 Score = 53.4 bits (127), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 45/248 (18%), Positives = 83/248 (33%), Gaps = 44/248 (17%)

Query: 161 ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLID 219
              S  D        +   + I  GC   C+FC +    G  I SRS + ++ E  ++ D
Sbjct: 294 PHPSYGDAKIPAWEMIRFSINIVRGCFGGCSFCSITEHEGRIIQSRSEASILREIEEIRD 353

Query: 220 NGVCEI----TLLGQNVNAWR----------------------GKGLDGEKCTFSDLLYS 253
                      L G   N WR                       K L  +      L  +
Sbjct: 354 KTKGFTGTISDLGGPTANMWRLGCREPEVQKVCRRLSCVYPDICKTLGTDHDPLIRLYRA 413

Query: 254 LSEIKGLVRLRYTTSHPRDM-------SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306
              +KG+ R+   +    D+        + L++ H     +  YL +  +   D  L  M
Sbjct: 414 ARGVKGVKRVNIGSGVRYDLAVTSPPYVEELVRHH-----VGGYLKIAPEHTEDGPLAKM 468

Query: 307 NRR--HTAYEYRQIIDRIRSVR-PDIAISSDFIVGFPGETDDDFRATMDLVDKIGY--AQ 361
            +    +   ++++ +R  +     + +   FI   PG +D D       + + G+   Q
Sbjct: 469 MKPGIGSYERFKEMFERAAAKAGKKLYLIPYFIAAHPGTSDQDMLNLALWLKRNGFRLDQ 528

Query: 362 AFSFKYSP 369
             +F  +P
Sbjct: 529 VQTFLPTP 536


>gi|313893092|ref|ZP_07826669.1| radical SAM domain protein [Veillonella sp. oral taxon 158 str.
           F0412]
 gi|313442445|gb|EFR60860.1| radical SAM domain protein [Veillonella sp. oral taxon 158 str.
           F0412]
          Length = 575

 Score = 53.4 bits (127), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 41/267 (15%), Positives = 97/267 (36%), Gaps = 40/267 (14%)

Query: 175 GVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA 234
           G    + +  GC + C FC+  Y   +   R L  + +   +    G     +       
Sbjct: 247 GAMYIIEVARGCGRHCRFCMAGYCFRVPRVRPLDILKEGVDRAEQLGKKVGLMGA----- 301

Query: 235 WRGKGLDGEKCTFSDLLYSLSEIK-GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHL 293
                       + ++   ++ I+   +R    +     ++  ++    D       + +
Sbjct: 302 --------AISDYPEVDELVNYIRSKDMRYSCASLRADSLTQAVVDGLADSGQ--KTITI 351

Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA---- 349
             ++GS+R+ + +N+  +  E+ Q    + +      +    ++G P ETD+D  A    
Sbjct: 352 APETGSERLRRVINKGIS-EEHLQNAATLSAKSGIQHMRLYIMIGLPTETDEDIEAIVGL 410

Query: 350 ---TMDLVDKIGYA---QAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQV 403
              T   + ++G           + P+  TP   M    ++    ++L  ++K L++   
Sbjct: 411 AERTQAHMAEVGCKGRLTLSINPFIPKPFTPFQWMAMD-NQKTVEKKLQYIKKALQKN-- 467

Query: 404 SFNDACVGQIIEVLIEKHGKEKGKLVG 430
                   + IEVL+E    ++  + G
Sbjct: 468 --------RRIEVLVE--SPKEAYIQG 484


>gi|304391544|ref|ZP_07373486.1| lipoyl synthase [Ahrensia sp. R2A130]
 gi|303295773|gb|EFL90131.1| lipoyl synthase [Ahrensia sp. R2A130]
          Length = 318

 Score = 53.4 bits (127), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 32/191 (16%), Positives = 66/191 (34%), Gaps = 12/191 (6%)

Query: 178 AFLTIQ-EGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR 236
           A + I  + C + C FC V   R   +     +    A  +    +  + +   +    R
Sbjct: 77  ATMMIMGDTCTRACAFCNVKTGRPDAL--DSDEPKRVAEAVAQLDLNHVVITSVD----R 130

Query: 237 GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQ 296
               DG     +D +Y++        +   T         L         +  +    V+
Sbjct: 131 DDLDDGGARHIADTIYAIRNASPRTTVEVLTPDFLRKDGALEIVVEAKPDVFNH---NVE 187

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
           +   R L ++      +   +++DR++ + P +   S  +VGF GET ++    MD +  
Sbjct: 188 TVPGRYL-TVRPGARYFHSLRLLDRVKELDPTMFTKSGLMVGF-GETRNEVLQLMDDLRS 245

Query: 357 IGYAQAFSFKY 367
                    +Y
Sbjct: 246 AQVDFLTVGQY 256


>gi|93007273|ref|YP_581710.1| coproporphyrinogen III oxidase [Psychrobacter cryohalolentis K5]
 gi|92394951|gb|ABE76226.1| oxygen-independent coproporphyrinogen III oxidase [Psychrobacter
           cryohalolentis K5]
          Length = 514

 Score = 53.4 bits (127), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 35/200 (17%), Positives = 66/200 (33%), Gaps = 21/200 (10%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDE--ARKLIDNG------------VCEITLLGQN 231
           C   C +C        + S      +    A      G            V ++   G  
Sbjct: 103 CRHLCYYCACNKIITKKNS-DAGDYLAYLIAEIKHKRGLLTPPEDGKKPLVKQLHFGGGT 161

Query: 232 VNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL 291
               +   L             L E +G   +      PR++S   +K    L      +
Sbjct: 162 PTFLQDNELIQLWEFLQTQFEFLPEDQGDYSIE---IDPRELSSETLKVLRTLG--FNRV 216

Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351
            L VQ   + +  ++NR H+A     +++  R +    +I+ D I G P +T + F  T+
Sbjct: 217 SLGVQDLDETVQIAVNRVHSAELIENVLNEARELGFH-SINVDLIYGLPHQTPETFDKTI 275

Query: 352 DLVDKIGYAQAFSFKYSPRL 371
             + ++   +   F Y+   
Sbjct: 276 RRIIEMSPDRLSVFNYAHLP 295


>gi|260578158|ref|ZP_05846078.1| biotin synthase [Corynebacterium jeikeium ATCC 43734]
 gi|258603697|gb|EEW16954.1| biotin synthase [Corynebacterium jeikeium ATCC 43734]
          Length = 345

 Score = 53.4 bits (127), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 34/206 (16%), Positives = 72/206 (34%), Gaps = 32/206 (15%)

Query: 185 GCDKFCTFC-VVPYTRGIEISR--SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD 241
           GC + C FC           S    ++Q+++ A++    G  E  ++     A +G   D
Sbjct: 80  GCPEDCHFCAQSGLFESPVRSIQLDIAQLIEAAKQTAKTGATEFCIVA----AVKGPDED 135

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
                 + +  +++ I+  V +    S    ++   +    +L V             + 
Sbjct: 136 ----LMNQMAKAIAAIQAEVDINIAASIGI-LTQEQVDRLKELGV----------HRYNH 180

Query: 302 ILKSMNR-------RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
            L++           HT  E    ++ +R     + +    IVG  GET +        +
Sbjct: 181 NLETCKSYFPEVVTTHTWEERTSTLEMVRDA--GMEVCCGGIVGM-GETVEQRAEFAIDL 237

Query: 355 DKIGYAQAFSFKYSPRLGTPGSNMLE 380
             +   +     + PR GTP +++  
Sbjct: 238 QNLDPTEVPLNFFDPRPGTPFADLEP 263


>gi|256752138|ref|ZP_05493004.1| oxygen-independent coproporphyrinogen III oxidase
           [Thermoanaerobacter ethanolicus CCSD1]
 gi|256748952|gb|EEU61990.1| oxygen-independent coproporphyrinogen III oxidase
           [Thermoanaerobacter ethanolicus CCSD1]
          Length = 375

 Score = 53.4 bits (127), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 32/214 (14%), Positives = 71/214 (33%), Gaps = 26/214 (12%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQ-VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK 244
           C + C +C      G          +     ++  N   +  ++   +         G  
Sbjct: 13  CKRKCYYCDFNSYAG--YDYLFDDYIRALLMEIESNSTKDYNVVSVYI---------GGG 61

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY-------LHLPVQS 297
                    + +I   V   Y      +++  +       + L  Y       + + +Q+
Sbjct: 62  TPNLLPPSYIEKILKSVFKNYKILDGCEITIEMNPGLITEEKLKIYKGSGINRVSIGLQA 121

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
             +R+LK + R HT  E+    + ++    +I I  D +   P +T  +++ T+  V K+
Sbjct: 122 FQNRLLKYIGRIHTVEEFFGNYELVKKFFDNINI--DLMYALPTQTFKEWQETLKEVVKL 179

Query: 358 GYAQAFSFKYSPRLGTPGSNMLEQ-----VDENV 386
                 ++       T    + E+     VDE  
Sbjct: 180 QPTHVSTYSLILEPNTSFYRLYEKGQLPIVDEEE 213


>gi|237744655|ref|ZP_04575136.1| oxygen-independent coproporphyrinogen III oxidase [Fusobacterium
           sp. 7_1]
 gi|229431884|gb|EEO42096.1| oxygen-independent coproporphyrinogen III oxidase [Fusobacterium
           sp. 7_1]
          Length = 307

 Score = 53.4 bits (127), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 48/270 (17%), Positives = 83/270 (30%), Gaps = 36/270 (13%)

Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDEARKLID------NGVCEITLLGQNVNAWRGKGLD 241
             C FC      G   S  L  +  +  + I+       G   I    QN          
Sbjct: 41  GGCIFCSE-NGSGDFTSGRLKSIHTQIDEQIELVSNKYKGNKYIAYF-QNFTNTYANVNY 98

Query: 242 GEK-CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300
             K    + L  ++  +    R     +   ++ D L            ++ L +Q+ +D
Sbjct: 99  LRKIYGEALLHKNIVGLAIATRPDCLENDVLELLDEL------NKKTFLWIELGLQTIND 152

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
            + K  NR +    Y ++  ++  +  +I   +  I+G P E DDD+  T       G  
Sbjct: 153 EVAKYFNRAYKTKIYEEVTKKLNKL--NIKFVTHIIIGLPKEKDDDYLKTAIFSQHCGTW 210

Query: 361 QAFSFKYSPRLGTPGSNMLEQVDENV--KAERLLCLQKKLREQQVSFN-DACVG------ 411
                       TP   + +  +  V  K E +  +   L             G      
Sbjct: 211 GLKLHLMYVVKNTPLEKLYKNGNLKVHTKEEYVEKIVNILENISSEIVIHRMTGDGDRET 270

Query: 412 --------QIIEVL--IEKHGKEKGKLVGR 431
                   + I+VL  I K  K +    GR
Sbjct: 271 LVAPLWSIKKIDVLNSIHKELKRRNTYQGR 300


>gi|148976532|ref|ZP_01813228.1| coproporphyrinogen III oxidase [Vibrionales bacterium SWAT-3]
 gi|145964108|gb|EDK29365.1| coproporphyrinogen III oxidase [Vibrionales bacterium SWAT-3]
          Length = 463

 Score = 53.4 bits (127), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 43/250 (17%), Positives = 87/250 (34%), Gaps = 24/250 (9%)

Query: 173 KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNV 232
           +R ++ ++ I   C K C +C          S    + +D     I        L G+ V
Sbjct: 56  ERPLSLYVHIPF-CHKLCYYCGCNKVITRH-SHKADEYLDVIEHEIRQ--RASLLNGREV 111

Query: 233 NAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL----- 287
                    G   TF      ++ +  ++R  +  +   ++S  +     +LDVL     
Sbjct: 112 TQLH---FGGGTPTF-LSKTQITRLMMILRDEFNFTADAEISIEVDPREIELDVLDHLRN 167

Query: 288 --MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS-DFIVGFPGETD 344
                L + VQ  +  + K +NR         ++ R + +      ++ D I G P +T 
Sbjct: 168 EGFNRLSIGVQDFNKEVQKLVNREQDEEFIVAMVQRAKEL--GFRSTNLDLIYGLPKQTQ 225

Query: 345 DDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM---LEQVDENVKAERLLCLQKKLREQ 401
             F  T+  V ++   +   F Y+       +      E + +    E++  LQ  +   
Sbjct: 226 ALFAETLKQVLEMKPGRLSVFNYAHMPQLFAAQRKIKDEDLPKAE--EKMAILQDTIETL 283

Query: 402 QVSFNDACVG 411
             +     +G
Sbjct: 284 TGAGYQ-FIG 292


>gi|110597131|ref|ZP_01385420.1| Cobalamin B12-binding:Radical SAM [Chlorobium ferrooxidans DSM
           13031]
 gi|110341322|gb|EAT59787.1| Cobalamin B12-binding:Radical SAM [Chlorobium ferrooxidans DSM
           13031]
          Length = 692

 Score = 53.4 bits (127), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 33/210 (15%), Positives = 75/210 (35%), Gaps = 19/210 (9%)

Query: 174 RGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEAR---KLIDNGVCEITLLGQ 230
           + +T  L    GC   CTFC   +      S++    V+  +   + +       +L   
Sbjct: 209 KNLTPLLQTSRGCPYSCTFC---HDGATYSSKTCHFSVERVKAELQYVAQRTQVPSLTLA 265

Query: 231 NVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPR--DMSDCLIKAHGDLDVLM 288
           ++N     G+  +    +  +    E+ G      T +     +    + +  G+  ++ 
Sbjct: 266 DLNW----GIFPQDLHIAHEIKKTQELHGWPLSIQTATDKNNKERIVEMSRVLGNAMII- 320

Query: 289 PYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP-DIAISSDFIVGFPGETDDDF 347
                 +QS  + +LK++ R      Y  I+   +     +    ++ I+  PG+T +  
Sbjct: 321 ---GASIQSSDEDVLKNVKR--QNIGYAAIVKMAKESSNTESVTFTEIILCLPGDTREKH 375

Query: 348 RATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
              +  +   G      ++Y    GT G+ 
Sbjct: 376 MKAVFDMLDAGIQDINLYQYILLPGTEGAT 405


>gi|39794691|gb|AAH64145.1| CDKAL1 protein [Homo sapiens]
          Length = 97

 Score = 53.4 bits (127), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 19/49 (38%), Gaps = 1/49 (2%)

Query: 11 AHMVSQIVDQCIVP-QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNS 58
              S   D  I   Q+ +++++GC  N  D   M     + GY+    
Sbjct: 49 EEENSPPSDSTIPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITGE 97


>gi|91784925|ref|YP_560131.1| coproporphyrinogen III oxidase [Burkholderia xenovorans LB400]
 gi|91688879|gb|ABE32079.1| Oxygen-independent coproporphyrinogen III oxidase HemN
           [Burkholderia xenovorans LB400]
          Length = 461

 Score = 53.4 bits (127), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 41/233 (17%), Positives = 70/233 (30%), Gaps = 25/233 (10%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQ--NVNAWRGKGLDGE 243
           CD  C +C                    AR  +D    EI L     +      +   G 
Sbjct: 64  CDTVCFYCGCNKIATKNR--------AHARPYLDQLKREIALQAVCFDTRRPVSQLHWGG 115

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLI--------KAHGDLDVL-MPYLHLP 294
                      +E+    R  +T     +    +         +    L  L    L L 
Sbjct: 116 GTPTFLSHDETAELMAATREHFTLLPDAEAEYSIEVDPREASPETIAHLRKLGFNRLSLG 175

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           VQ     + +++NR         ++   R      +I  D I G P +T + F  T+D +
Sbjct: 176 VQDFDPVVQQAINRIQPLEMTASVMQAARDTGFH-SIGVDLIYGLPHQTVESFSRTLDTM 234

Query: 355 DKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV---KAERLLCLQKKLREQQVS 404
            ++   +   F Y+         M  Q+D         RL  LQ+ +     +
Sbjct: 235 IELAPDRLSVFAYAHMPQL--FKMQRQMDPATLPSPDVRLAILQRVVERLTGA 285


>gi|72162584|ref|YP_290241.1| Elongator protein 3/MiaB/NifB [Thermobifida fusca YX]
 gi|71916316|gb|AAZ56218.1| Elongator protein 3/MiaB/NifB [Thermobifida fusca YX]
          Length = 644

 Score = 53.4 bits (127), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 57/322 (17%), Positives = 99/322 (30%), Gaps = 51/322 (15%)

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
             V++ D     K   + I +  + R       + I  GC + C FC           RS
Sbjct: 240 HTVMNLDDWPYPKNPIVPIAESVHERYS-----VEIFRGCTRGCRFCQAGMITRPVRERS 294

Query: 207 LSQVVDEARKLID-NGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
              +       +  +G  E+ LL   +++     +       +D             L  
Sbjct: 295 EKAIAAMVDHGLRSSGFQEVGLLS--LSSADHSQISEITKNLADRYE-----GTHTGLSL 347

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
            ++     +  L             L    + GS+R+ + +N+  T  +  + +  I + 
Sbjct: 348 PSTRVDAFNIDLANELTRNGR-RSGLTFAPEGGSERMRRVINKMVTEEDLIRTV--IAAY 404

Query: 326 RPDIA-ISSDFIVGFPGETDDDFRATMDLVDKI---------GYAQAFSF---KYSPRLG 372
                 +   F+ G P E D D  A  DL  K+               +     + P+  
Sbjct: 405 AAGWRQVKLYFMCGLPTEEDADVLAIADLARKVIKTGREVTGRRDIRCTVSIGGFVPKPH 464

Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVG--------QIIEVL------- 417
           TP      Q    V   RL  L+  LR          +G         IIE L       
Sbjct: 465 TP-FQWAGQAPHEVVDSRLRKLRDALR--SDREYGKSIGLRYHEGRPSIIEGLLSRGDRR 521

Query: 418 ----IEKHGKEKGKLVGRSPWL 435
               +E+  +E G+  G S + 
Sbjct: 522 LCRVVERVWREGGRFDGWSEYF 543


>gi|225390166|ref|ZP_03759890.1| hypothetical protein CLOSTASPAR_03916 [Clostridium asparagiforme
           DSM 15981]
 gi|225043760|gb|EEG54006.1| hypothetical protein CLOSTASPAR_03916 [Clostridium asparagiforme
           DSM 15981]
          Length = 362

 Score = 53.4 bits (127), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 29/206 (14%), Positives = 63/206 (30%), Gaps = 19/206 (9%)

Query: 176 VTAFLTIQEGCDKFCTFCVVPYTRG-IEISR-SLSQVVDEARKLIDNGVCEITLLGQNVN 233
           +   +     C   C +C +          R +  Q+++  R   + G     L G    
Sbjct: 60  IRGLIEFTNYCKNNCYYCGIRRDNRCASRYRLTEEQILECCRAGYELGFRTFVLQG---- 115

Query: 234 AWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHL 293
              G+         + L+ ++        +  +       S     A G    L+ +   
Sbjct: 116 ---GEDPYFTDGRVTGLVRAIKAGYPDCAVTLSIGEKDRASYEAYFAAGADRYLLRHETA 172

Query: 294 PVQSGSDRILKSMNRRHTAY-EYRQIIDRIRSVRP-DIAISSDFIVGFPGETDDDFRATM 351
             +           + H A    R+ ++ +R ++       + F+VG PG+T D     +
Sbjct: 173 NHEH--------YGKLHPAELSLRRRMECLRDLKDIGFQTGAGFMVGSPGQTMDCILDDL 224

Query: 352 DLVDKIGYAQAFSFKYSPRLGTPGSN 377
           + +            + P   TP + 
Sbjct: 225 EFLRDFEPEMVGIGPFIPHHDTPFAA 250


>gi|225568051|ref|ZP_03777076.1| hypothetical protein CLOHYLEM_04124 [Clostridium hylemonae DSM
           15053]
 gi|225163147|gb|EEG75766.1| hypothetical protein CLOHYLEM_04124 [Clostridium hylemonae DSM
           15053]
          Length = 636

 Score = 53.4 bits (127), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 42/292 (14%), Positives = 86/292 (29%), Gaps = 49/292 (16%)

Query: 132 TYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTI------QEG 185
             Y   + + +    + +  ++      +  +      Y +  GV A   +        G
Sbjct: 249 EPYGEHQYVVQNPPSRPLTQSEMDRVYSYPYMRTYHPSYEKDNGVPAISEVKFSLVSNRG 308

Query: 186 CDKFCTFCVVPYTRGIEIS-RSLSQVVDEARKLI-DNGVC-EITLLGQNVNAWRGKGLDG 242
           C   C+FC + + +G  +  RS   ++ EA + I +      I  +G     +R    D 
Sbjct: 309 CFGGCSFCALTFHQGRIMQVRSHESLLAEANQFIWEEDFKGYIHDVGGPTANFRHPSCDK 368

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMP------------- 289
           +  T           K    L+            L++   +L  +               
Sbjct: 369 QLRTGVCTKRQCLFPKPCGNLKVDHKDYIV----LLRKLRELPKVKKVFIRSGIRFDYVM 424

Query: 290 ------------YLHLPVQ------SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA- 330
                         H+  Q        SD +L  M +      Y+  + + + +  DI  
Sbjct: 425 ADKDDTFFRELCQYHVSGQLKVAPEHVSDAVLSKMGKPENR-VYQSFVSKYKKINNDIGK 483

Query: 331 ---ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
              +    +   PG T  +     + +  +GY       + P   T  + M 
Sbjct: 484 EQYLVPYLMSSHPGSTMKEAVELAEYLRDLGYMPEQVQDFYPTPSTISTCMY 535


>gi|94986835|ref|YP_594768.1| Fe-S oxidoreductase [Lawsonia intracellularis PHE/MN1-00]
 gi|94731084|emb|CAJ54447.1| predicted Fe-S oxidoreductase [Lawsonia intracellularis PHE/MN1-00]
          Length = 298

 Score = 53.4 bits (127), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 34/197 (17%), Positives = 67/197 (34%), Gaps = 18/197 (9%)

Query: 174 RGVTAFLTIQEGCDKF--------CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEI 225
           RG    L +   C           C FC V  +                 +  +      
Sbjct: 18  RGQKIPLDVGSSCPNRERSNSNIGCVFCNVSGSGSGLG-----LSGMSITEQWNYWHKHF 72

Query: 226 TLLGQNVNAW-RGKGLDGEKCTFSDLLYSLSEIKGLVRL--RYTTSHPRDMSDCLIKAHG 282
           ++  Q +      +         S     L++IKGL  +      + P  +++  +    
Sbjct: 73  SISNQYIRFIAYLQSFSNTYGPLSKFSSILAQIKGLQDVAGISVGTRPDCLTNKKLSLIV 132

Query: 283 DLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGE 342
           ++  L  ++   VQS  D  L  + R H++    Q I  I++    + + +  + G PGE
Sbjct: 133 EMPYLEKWVEFGVQSLHDETLIKIKRGHSSKCSEQAI--IQAANAGLQVCAHVMFGLPGE 190

Query: 343 TDDDFRATMDLVDKIGY 359
           T      T+D ++ +  
Sbjct: 191 TPTHMLQTIDRLNSLPI 207


>gi|54310021|ref|YP_131041.1| lipoyl synthase [Photobacterium profundum SS9]
 gi|81615047|sp|Q6LN87|LIPA_PHOPR RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|46914460|emb|CAG21239.1| putative lipoic acid synthetase [Photobacterium profundum SS9]
          Length = 322

 Score = 53.4 bits (127), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 31/212 (14%), Positives = 67/212 (31%), Gaps = 14/212 (6%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V    G  +  +  +    A+ + D  +  + +   +    R    DG   
Sbjct: 95  CTRRCPFCDV--AHGRPLPPNAEEPSHLAQTIADMKLKYVVITSVD----RDDLRDGGAQ 148

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAH-GDLDVLMPYLHLPVQSGSDRILK 304
            F D +  + E    + +       R   D  +    G    +  +        + R+ +
Sbjct: 149 HFVDCIREIREKSPEIHIETLVPDFRGRMDRALDILQGTPPNVFNHNL----ETAPRLYR 204

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
                        ++   + + P++   S  ++G  GET ++    +  +   G      
Sbjct: 205 KARPGANYQWSLDLLKNFKEIHPEVPTKSGVMMGL-GETKEEIIQVLKDLRAHGVTMLTL 263

Query: 365 FKYSP--RLGTPGSNMLEQVDENVKAERLLCL 394
            +Y    R   P    +   + +   E  L L
Sbjct: 264 GQYLAPSRHHLPVERYVPPAEFDELKEIALEL 295


>gi|113972238|ref|YP_736031.1| coproporphyrinogen III oxidase [Shewanella sp. MR-4]
 gi|113886922|gb|ABI40974.1| oxygen-independent coproporphyrinogen III oxidase [Shewanella sp.
           MR-4]
          Length = 446

 Score = 53.4 bits (127), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 36/236 (15%), Positives = 78/236 (33%), Gaps = 21/236 (8%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C K C +C         I+R   +       L    +    L           G  G   
Sbjct: 51  CAKLCYYC----GCNKVITRHAHKADQYIEYLSHEIIKRAPLFKHYTVTQMHWG--GGTP 104

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL-------MPYLHLPVQSG 298
           TF      + ++  L++  +  +   + S  +     +L +L          + + VQ  
Sbjct: 105 TF-LNPEQILKLTDLIKANFNFAAEGEFSIEVDPREIELSMLDTLKEAGFNRISIGVQDF 163

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           +  +  ++NR         ++ + ++    ++ + D I G P +T + F ATM  V  + 
Sbjct: 164 NKEVQVAVNREQDEQFIFDLMAKAKA-MGFVSTNIDLIYGLPHQTPETFAATMQRVLDLS 222

Query: 359 YAQAFSFKYSPRLGTPGSNM---LEQVDENVKAERLLCLQKKLREQQVSFNDACVG 411
             +   F Y+       +      E +      ++L  L + +     +     +G
Sbjct: 223 PDRLSVFNYAHLPARFAAQRKIKDEHLPSP--KQKLEMLHQTIETLTGAGYQ-YIG 275


>gi|313886793|ref|ZP_07820499.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Porphyromonas asaccharolytica PR426713P-I]
 gi|312923757|gb|EFR34560.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Porphyromonas asaccharolytica PR426713P-I]
          Length = 371

 Score = 53.4 bits (127), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 40/202 (19%), Positives = 65/202 (32%), Gaps = 16/202 (7%)

Query: 186 CDKFCTFCVV-PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK 244
           C   C +C     +     S  +  +  E     D G   +           G       
Sbjct: 11  CPTRCIYCDFYSQSDLSLQSAFVEALCRELTIYCDRG---LWATAPRTIYLGGGTPSSLP 67

Query: 245 CTFSDLLYSLSEIKGLVRL-----RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
                L   +  I+ L RL         ++P D+S    +    L      + L VQS S
Sbjct: 68  --LPLLERLMQHIRSLWRLDKSIEITIEANPEDVSPEWARGVAQLG--FNRISLGVQSLS 123

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS-DFIVGFPGETDDDFRATMDLVDKIG 358
           D  L+ + RRH+A +    I  IR     I+  S D I   P   +  +  ++     + 
Sbjct: 124 DETLRFLQRRHSAAQAELAISYIREA--GISNVSIDLIFALPKGYEQHWFESLAHALVLP 181

Query: 359 YAQAFSFKYSPRLGTPGSNMLE 380
                ++  +   GT    M E
Sbjct: 182 VTHLSAYGLTYESGTRLDRMRE 203


>gi|282850168|ref|ZP_06259547.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Veillonella parvula ATCC 17745]
 gi|282579661|gb|EFB85065.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Veillonella parvula ATCC 17745]
          Length = 399

 Score = 53.4 bits (127), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 36/233 (15%), Positives = 82/233 (35%), Gaps = 16/233 (6%)

Query: 186 CDKFCTFCVVPYTRGIEISRS--LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
           C + C +C  P  + ++      +  +V E    I           + ++     G    
Sbjct: 30  CKQKCMYCDFPAYQNLQDYYETYVYALVQEIDLWISEHPES---TSKAIDTIYFGGGTPT 86

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL---MPYLHLPVQSGSD 300
           + +   L   L +IK    +        + +   +  H    ++      +   VQ+  D
Sbjct: 87  ELSIQQLQMILDKIKNTFTITDDCHMTIESNPGEVNLHYLTKLVELGFNRISFGVQTFDD 146

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSV-RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
           + L  ++R H   + +Q +   +     DI I  D I G P ++ DD +  +D+V  +  
Sbjct: 147 KALTMLHRSHNGKQAKQAVYDAKEAGFADINI--DLIYGLPRQSSDDIQHNLDIVKDLPI 204

Query: 360 AQAFSFKYSPRLGTPGSNMLEQ----VDENVKAE-RLLCLQKKLREQQVSFND 407
               ++     +GT   +++++    +      E     +   L+E      +
Sbjct: 205 NHISTYGLQVEVGTYLYHLVQKNLISIPSETIDEVMYDMMMDGLKELGFERYE 257


>gi|269219116|ref|ZP_06162970.1| lipoyl synthase [Actinomyces sp. oral taxon 848 str. F0332]
 gi|269211263|gb|EEZ77603.1| lipoyl synthase [Actinomyces sp. oral taxon 848 str. F0332]
          Length = 337

 Score = 53.4 bits (127), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 43/264 (16%), Positives = 84/264 (31%), Gaps = 25/264 (9%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC +    G        +    A  +   G+   T+ G      R    DG   
Sbjct: 81  CTRRCDFCQI--ATGKPKGLDRDEPRRVAESVRHLGLRYATVTGV----ARDDLPDGASW 134

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
            +++    + E+     +       +     L +       +  +    V     RI K 
Sbjct: 135 IYAETCRQIHELCPGTGVELLVDDFQGDVGALRQVFDSRPEVFAHNLETV----PRIFKR 190

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           +           II         +   S+ I+G  GET ++    M  + +         
Sbjct: 191 IRPAFRYERSLDIIAMASE--EGLVTKSNLILGM-GETREEIEEAMAALRENSCDLLTVT 247

Query: 366 KYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK 425
           +Y  R     S +   +D  VK +  + L+   R+  + F     G     L+ +     
Sbjct: 248 QYL-RP----SPLHHPIDRWVKPKEFIELRDLGRK--MGFAGVMAGP----LV-RSSYRA 295

Query: 426 GKLVGRSPWLQSVVLNSKNHNIGD 449
           G+L G +   + + L     ++G+
Sbjct: 296 GRLYGMAMTAKGLELPPGMEHLGE 319


>gi|49475372|ref|YP_033413.1| lipoyl synthase [Bartonella henselae str. Houston-1]
 gi|81648040|sp|Q6G401|LIPA_BARHE RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|49238178|emb|CAF27387.1| Lipoic acid synthetase [Bartonella henselae str. Houston-1]
          Length = 320

 Score = 53.4 bits (127), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 31/194 (15%), Positives = 69/194 (35%), Gaps = 11/194 (5%)

Query: 174 RGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVN 233
           +   +F+ + E C + C FC V    GI  +   ++    A  +    +  + +   +  
Sbjct: 73  QRHASFMILGEICTRACAFCNV--ATGIPFAVDENEPERVADAVARMELKHVVITSVD-- 128

Query: 234 AWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHL 293
             R    DG    F+ ++Y++        +   T   R     L         +  +   
Sbjct: 129 --RDDLADGGAEHFAKVIYAIRRKAPKTTIEVLTPDFRHKDGALEIVVAAKPDVFNH--- 183

Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
            +++   + LK +      +   +++ R++ + P I   S  +VG  GE  ++    MD 
Sbjct: 184 NLETVPSKYLK-VRPGARYFHSIRLLQRVKELDPTIFTKSGIMVGL-GEERNEILQLMDD 241

Query: 354 VDKIGYAQAFSFKY 367
           +           +Y
Sbjct: 242 LRSADVDFMTIGQY 255


>gi|114049487|ref|YP_740037.1| coproporphyrinogen III oxidase [Shewanella sp. MR-7]
 gi|113890929|gb|ABI44980.1| oxygen-independent coproporphyrinogen III oxidase [Shewanella sp.
           MR-7]
          Length = 446

 Score = 53.4 bits (127), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 36/236 (15%), Positives = 78/236 (33%), Gaps = 21/236 (8%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C K C +C         I+R   +       L    +    L           G  G   
Sbjct: 51  CAKLCYYC----GCNKVITRHAHKADQYIEYLSHEIIKRAPLFKHYTVTQMHWG--GGTP 104

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL-------MPYLHLPVQSG 298
           TF      + ++  L++  +  +   + S  +     +L +L          + + VQ  
Sbjct: 105 TF-LNPEQILKLTDLIKANFNFAAEGEFSIEVDPREIELSMLDTLKEAGFNRISIGVQDF 163

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           +  +  ++NR         ++ + ++    ++ + D I G P +T + F ATM  V  + 
Sbjct: 164 NKEVQVAVNREQDEQFIFDLMAKAKA-MGFVSTNIDLIYGLPHQTPETFAATMQRVLDLS 222

Query: 359 YAQAFSFKYSPRLGTPGSNM---LEQVDENVKAERLLCLQKKLREQQVSFNDACVG 411
             +   F Y+       +      E +      ++L  L + +     +     +G
Sbjct: 223 PDRLSVFNYAHLPARFAAQRKIKDEHLPSP--KQKLEMLHQTIETLTGAGYQ-YIG 275


>gi|294793681|ref|ZP_06758818.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Veillonella sp. 3_1_44]
 gi|294455251|gb|EFG23623.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Veillonella sp. 3_1_44]
          Length = 394

 Score = 53.4 bits (127), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 34/233 (14%), Positives = 81/233 (34%), Gaps = 16/233 (6%)

Query: 186 CDKFCTFCVVPYTRGIEISRS--LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
           C + C +C  P  + ++      +  +V E    +           + ++     G    
Sbjct: 25  CKQKCMYCDFPAYQNLKDYYETYVYALVQEIDLWVSEHPES---TSKAIDTIYFGGGTPT 81

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSD--CLIKAHGDLDVL-MPYLHLPVQSGSD 300
           + +   L   L +IK    +        + +     +     L       +   VQ+  D
Sbjct: 82  ELSIQHLQMILDKIKNTFTITDDCHMTIESNPGEVNLHYLTKLVKFGFNRISFGVQTFDD 141

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSV-RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
           + L  ++R H   + +Q +   +     DI I  D I G P ++ DD +  + +V+++  
Sbjct: 142 KALTMLHRSHNGEQAKQAVYDAKEAGFADINI--DLIYGLPRQSLDDIKRNLAVVEELPI 199

Query: 360 AQAFSFKYSPRLGTPGSNMLEQ----VDENVKAE-RLLCLQKKLREQQVSFND 407
               ++     +GT   +++++    +      E     +   L+E      +
Sbjct: 200 NHISTYGLQVEVGTYLYHLVQKNLIFIPSESIDESMYDTMMAGLKELGFERYE 252


>gi|253690584|ref|YP_003019774.1| oxygen-independent coproporphyrinogen III oxidase [Pectobacterium
           carotovorum subsp. carotovorum PC1]
 gi|251757162|gb|ACT15238.1| oxygen-independent coproporphyrinogen III oxidase [Pectobacterium
           carotovorum subsp. carotovorum PC1]
          Length = 457

 Score = 53.4 bits (127), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 45/248 (18%), Positives = 94/248 (37%), Gaps = 20/248 (8%)

Query: 173 KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNV 232
           +R ++ ++ I   C + C FC        +  +   + +D   + I          G+ V
Sbjct: 50  QRPLSLYIHIPF-CHRLCYFCGCNKLVTRQQHK-ADEYLDVLEQEIRQ--RAPLFAGRTV 105

Query: 233 NAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL----- 287
                 G  G     + +   +S +  L+R  ++ S   ++S  +     +LDVL     
Sbjct: 106 TQLHWGG--GTPTYLNKV--QISRLMSLLRELFSFSEQAELSLEVDPREIELDVLDHLRA 161

Query: 288 --MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS-DFIVGFPGETD 344
                L + VQ  +  + K +NR         +I+R +++      ++ D I G P +T 
Sbjct: 162 EGFNRLSMGVQDFNKDVQKLVNREQDEDFIFALIERAKAL--GFTSTNIDLIYGLPKQTP 219

Query: 345 DDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQV 403
           + F  T+  V  +   +   F Y+       +   +++ D     ++L  LQ+ +     
Sbjct: 220 ESFAFTLQRVAALSPHRLSVFNYAHLPSLFAAQRKIKEADLPSAEQKLDILQQTIGSLTQ 279

Query: 404 SFNDACVG 411
           S     +G
Sbjct: 280 SGYQ-FIG 286


>gi|227504646|ref|ZP_03934695.1| lipoyl synthase [Corynebacterium striatum ATCC 6940]
 gi|227198756|gb|EEI78804.1| lipoyl synthase [Corynebacterium striatum ATCC 6940]
          Length = 354

 Score = 53.4 bits (127), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 38/219 (17%), Positives = 78/219 (35%), Gaps = 20/219 (9%)

Query: 184 EGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
           + C + C FC +  ++  E+ R   +    A  + +  +   T+ G      R    D  
Sbjct: 70  DKCTRRCDFCDIATSKPAELDR--DEPRRVAENIQEMDLNYTTITGVT----RDDLPDEG 123

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
              +++++  + E+     +   T       D L +       +  +    V     RI 
Sbjct: 124 AWLYAEVVRKIHELNPNTGVENLTPDFSGKPDLLQEVFEARPEVFAHNLETV----PRIF 179

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRP-DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           K +     A+ Y + +D IR      +   S+ I+G  GET ++    +  + + G    
Sbjct: 180 KRIRP---AFRYERSLDVIRQAHDFGLITKSNLILGM-GETAEEIEEALRDLREAGCDII 235

Query: 363 FSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQ 401
              +Y  R G         ++  V+ E  +   K  +E 
Sbjct: 236 TITQYL-RPG----PRFHPIERWVRPEEFVEHSKLAKEL 269


>gi|197301866|ref|ZP_03166935.1| hypothetical protein RUMLAC_00592 [Ruminococcus lactaris ATCC
           29176]
 gi|197299096|gb|EDY33627.1| hypothetical protein RUMLAC_00592 [Ruminococcus lactaris ATCC
           29176]
          Length = 390

 Score = 53.4 bits (127), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 40/252 (15%), Positives = 80/252 (31%), Gaps = 32/252 (12%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C K C +C      G   SR   +   +A      G  +      +    +   L G   
Sbjct: 18  CVKKCNYCDFFSAAG---SREEQEAYVQAMIQEIRGYKD----SLHSYEVKTVFLGGGTP 70

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY-------LHLPVQSG 298
           +         E+   +   +T     +++  +     +L+ L  Y       L L +QS 
Sbjct: 71  SL-LSERQAEELFQSLYDSFTIQKDAEITMEVNPGTVNLEKLKQYKAAGVNRLSLGLQSA 129

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS-DFIVGFPGETDDDFRATMDLVDKI 357
            +  L+ + R HT  ++    +            + D +   PG+T + +  T++ V  +
Sbjct: 130 RNEELQRLGRIHTYEDFLATWNFTEKA--GFENRNIDLMSELPGQTMESWEDTLEKVIAL 187

Query: 358 GYAQAFSFKYSPRLGTPGSNMLE---------QVDENVKAERL-----LCLQKKLREQQV 403
                 ++      GT   +  +         ++    +  R+       L K   E+  
Sbjct: 188 EPEHISAYSLILEEGTRFYHWYQEGKFDSGEWKLPSEEEEYRMGEWTIERLAKAGMERYE 247

Query: 404 SFNDACVGQIIE 415
             N A  GQ   
Sbjct: 248 ISNYARTGQECR 259


>gi|302872837|ref|YP_003841473.1| Radical SAM domain protein [Caldicellulosiruptor obsidiansis OB47]
 gi|302575696|gb|ADL43487.1| Radical SAM domain protein [Caldicellulosiruptor obsidiansis OB47]
          Length = 351

 Score = 53.4 bits (127), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 25/201 (12%), Positives = 69/201 (34%), Gaps = 17/201 (8%)

Query: 176 VTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL--SQVVDEARKLIDNGVCEITLLGQNVN 233
           +   +     C   C +C +  +        +   ++V+ A++    G   + L      
Sbjct: 53  LRGLIEFSSYCKNDCFYCGLRKSNSQAQRYRMQEDEIVEVAKRAYQMGYRTVVLQS---- 108

Query: 234 AWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHL 293
              G+ +   K     ++  + +   +           D       A  D         +
Sbjct: 109 ---GEDMFYTKDRMCSIIKKIKQNVDVAITLSIGERSYDEYKAFKDAGADR------FLM 159

Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
             ++ ++++ +  +   +  +  + +  ++S+     + + F++G PG+T DD    + L
Sbjct: 160 RFETSNEKLYRQYHPGMSFEKRIECLKWLKSL--GYELGTGFLIGLPGQTIDDLAQDILL 217

Query: 354 VDKIGYAQAFSFKYSPRLGTP 374
           V ++         + P   TP
Sbjct: 218 VKELDADMIGIGPFIPHPQTP 238


>gi|240950379|ref|ZP_04754645.1| lipoyl synthase [Actinobacillus minor NM305]
 gi|240295105|gb|EER45933.1| lipoyl synthase [Actinobacillus minor NM305]
          Length = 325

 Score = 53.4 bits (127), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 31/214 (14%), Positives = 67/214 (31%), Gaps = 10/214 (4%)

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           + +    E  S  +       G   F+ +   C + C FC V    G  +     +    
Sbjct: 66  HGLHSVCEEASCPNLHECFNHGTATFMIMGAICTRRCPFCDV--AHGKPLPLDPEEPRKV 123

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
           A  + D  +  + +   +    R    D     F+  +  +  +    ++        D 
Sbjct: 124 AETVQDMKLKYVVITSVD----RDDLPDRGAAHFAATVREIKALNPDCKVEILVP---DF 176

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
              + +A   L    P +         R+ + +          +++   +   P+I   S
Sbjct: 177 RGRVEQAVAILKQNPPDVFNHNLENVPRLYREVRPGADYKWSLELLKIFKQEFPNIPTKS 236

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
             +VG  GET+++    M  +   G       +Y
Sbjct: 237 GLMVGL-GETNEEILEVMQDLRDHGVTMLTIGQY 269


>gi|170077963|ref|YP_001734601.1| radical SAM domain-containing protein [Synechococcus sp. PCC 7002]
 gi|169885632|gb|ACA99345.1| radical SAM domain protein [Synechococcus sp. PCC 7002]
          Length = 534

 Score = 53.4 bits (127), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 54/238 (22%), Positives = 91/238 (38%), Gaps = 24/238 (10%)

Query: 177 TAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR 236
              + +   C + C FC+  Y      + +L Q +  A +        + LLG +V    
Sbjct: 221 IYMVEVVRSCPEMCRFCLASYVTLPFRTANLEQSLIPAIERGLKVTDRLGLLGASVTQH- 279

Query: 237 GKGLDGEKCTFSDLLYSLSEIK-GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPV 295
                     F  LL  LS+ +   VRL   +     +++ L +     D     + + V
Sbjct: 280 --------PEFEQLLDYLSQPQYADVRLSIASVRTNTVTEKLARTLAARDT--RSITIAV 329

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRS-VRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           +SGS+R+ + +N++ T  E        ++     I      +VG PGE   D  AT+ ++
Sbjct: 330 ESGSERLREIVNKKLTNDEIITAAINAKAGGLKGIKFYG--MVGIPGEEMADVEATVAMM 387

Query: 355 DKIGYA------QAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFN 406
             +  A            + P+  TP       V+   K  RL  LQK LR Q + F 
Sbjct: 388 QAVKKAAPGLRLTLGCSTFVPKAHTPFQWFG--VNPAAKK-RLQFLQKHLRSQGIEFR 442


>gi|163782172|ref|ZP_02177171.1| hypothetical protein HG1285_18604 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882704|gb|EDP76209.1| hypothetical protein HG1285_18604 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 318

 Score = 53.4 bits (127), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 33/193 (17%), Positives = 63/193 (32%), Gaps = 16/193 (8%)

Query: 188 KFCTFC---VVPYTRGIEISRS----LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL 240
             CTFC     P       S      + + ++ A++     +          N +     
Sbjct: 44  GGCTFCHDGSKPSMLSP--SVPLETQIEEGMERAKRKYGEDILFFVYYQSYTNTYADINT 101

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300
                  +     +  I    R         D    L+  + +   L  ++   +QS + 
Sbjct: 102 LRRVYDTALGFEGVVGIDVGTRPDCAPEEVLD----LLTGYAERG-LEVWVEFGLQSANF 156

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
             LKS+NR H   ++   +  +R+ +  + + +  IVG PGE  +D   T  L+  +   
Sbjct: 157 ETLKSINRAHGVSDFVDAV--LRAKKRPLKVCAHMIVGLPGEGREDIIETAKLLAALPVD 214

Query: 361 QAFSFKYSPRLGT 373
                      GT
Sbjct: 215 GVKIHPLHVIRGT 227


>gi|21553591|gb|AAM62684.1| lipoic acid synthase-like protein [Arabidopsis thaliana]
          Length = 393

 Score = 53.4 bits (127), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 48/260 (18%), Positives = 94/260 (36%), Gaps = 24/260 (9%)

Query: 121 SPIVNVVVGPQTYYRLPELL-ERARFGKRVVDTDYS--------VEDKFERLSIVDGGYN 171
            P +    G     + P  L ++A  G+R  +   S        V ++ +  +I +    
Sbjct: 81  MPKMGPFTGRDPNVKKPAWLRQKAPQGERFQEVKESLSRLNLNTVCEEAQCPNIGECWNG 140

Query: 172 RKRGVTAFLTIQ---EGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLL 228
              GV A  TI    + C + C FC V  +R         +  + A+ +   GV  I + 
Sbjct: 141 GGDGV-ATATIMVLGDTCTRGCRFCAVKTSRNPPP-PDPMEPENTAKAIASWGVDYIVIT 198

Query: 229 GQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPR-DMSDCLIKAHGDLDVL 287
             +    R    DG    F+  + ++   K  + +   TS  R D+       H  LDV 
Sbjct: 199 SVD----RDDIPDGGSGHFAQTVKAMKRHKPDIMIECLTSDFRGDLEAVDTLVHSGLDVF 254

Query: 288 MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDF 347
              +         R+++     +   +   ++   +  +P +   +  ++G  GETD++ 
Sbjct: 255 AHNVETV--KRLQRLVRDPRAGY--EQSMSVLKHAKISKPGMITKTSIMLGL-GETDEEL 309

Query: 348 RATMDLVDKIGYAQAFSFKY 367
           +  M  +  I        +Y
Sbjct: 310 KEAMADLRAIDVDILTLGQY 329


>gi|83718156|ref|YP_438500.1| putative coproporphyrinogen III oxidase [Burkholderia thailandensis
           E264]
 gi|167614971|ref|ZP_02383606.1| putative coproporphyrinogen III oxidase [Burkholderia thailandensis
           Bt4]
 gi|257141551|ref|ZP_05589813.1| putative coproporphyrinogen III oxidase [Burkholderia thailandensis
           E264]
 gi|83651981|gb|ABC36045.1| putative coproporphyrinogen III oxidase [Burkholderia thailandensis
           E264]
          Length = 490

 Score = 53.4 bits (127), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 41/219 (18%), Positives = 67/219 (30%), Gaps = 23/219 (10%)

Query: 160 FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLID 219
           FER     G          F      C+  C FC          SR       +  +  D
Sbjct: 53  FERYKRHPGRGKPAHLYYHFPL----CEYICHFCNYVKQLASPTSRD-----AQLDRWTD 103

Query: 220 NGVCEITLLGQNVNAWRG----KGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSD 275
             + E TL  Q V    G        G           L  I   VR  +  +   +++ 
Sbjct: 104 ALIKESTLYAQQVPWITGALIESFYIGGGTAAVLTPAHLLRILDHVRSTFHVTPECELNI 163

Query: 276 C--------LIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
                    + K     D+      + VQS +  + +  NR HT    RQ I  +RS   
Sbjct: 164 EGNPDNFCDIDKVRALSDIGFNRFSVGVQSFTPEVNQFTNRGHTPDMSRQAILNLRST-- 221

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
               + D + G P +T +     +  + ++       ++
Sbjct: 222 GFPFNVDMMFGLPHQTPETVSEDLRTLVELRVPTITIYR 260


>gi|310766966|gb|ADP11916.1| lipoyl synthase [Erwinia sp. Ejp617]
          Length = 321

 Score = 53.0 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 30/183 (16%), Positives = 67/183 (36%), Gaps = 12/183 (6%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V    G  ++   ++    A+ + D  +  + +   +    R    DG   
Sbjct: 94  CTRRCPFCDV--AHGRPMAPDANEPGKLAQTIADMALRYVVITSVD----RDDLRDGGAQ 147

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAH-GDLDVLMPYLHLPVQSGSDRILK 304
            F+D + ++ E    +++       R   D  ++        +  +    V     R+ +
Sbjct: 148 HFADCISAIREKSPAIKIETLVPDFRGRMDRALEILNATPPDVFNHNLENV----PRVYR 203

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
            +          ++++R +   P+I   S  +VG  GET+ +    M  + + G      
Sbjct: 204 QVRPGANYDWSLKLLERFKEAHPEIPTKSGLMVGL-GETNAEIVEVMRDLRRHGVTMLTL 262

Query: 365 FKY 367
            +Y
Sbjct: 263 GQY 265


>gi|326203261|ref|ZP_08193126.1| cobalamin B12-binding domain protein [Clostridium papyrosolvens DSM
           2782]
 gi|325986519|gb|EGD47350.1| cobalamin B12-binding domain protein [Clostridium papyrosolvens DSM
           2782]
          Length = 452

 Score = 53.0 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 42/279 (15%), Positives = 95/279 (34%), Gaps = 29/279 (10%)

Query: 97  EGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSV 156
           +G      +  C+A+ + + IL    +V V  G   +    E++          D   S 
Sbjct: 115 DGDCSFPSLIQCIAKQDRD-ILSIPGVVTVNNGKLIFGAKKEIIH---------DLSVSP 164

Query: 157 EDKFERLSIVDGGYNRK-RGVTAFLTIQEGCDKFCTFCVVPYTR-GIEISRSLSQVVDEA 214
               E        Y        A ++   GC   C FC +   R GI     + +V+ E 
Sbjct: 165 IPARELTQKYRSFYKFAGWDDLASISTSRGCMCRCNFCTIWKIRDGITAHFPIERVITEL 224

Query: 215 RKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMS 274
           + + +  +           A   + ++  +  + ++      +K  +   Y      + +
Sbjct: 225 KMINEKNIYL-------CEAHSFQDINYMERLYDEI------VKNNIHKNYMAYVRVNTA 271

Query: 275 DCLIKAHGDLDVL-MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
              I        + +  + + +++ ++  L   N+  ++      ++ +      I I S
Sbjct: 272 VKFIDLLRKWTGIGLKRVFIGIETVTNDRLNGFNKASSSSLNETAVNLLHDA--GIEIMS 329

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
            FIV    + ++DF+   + V K+          +P  G
Sbjct: 330 SFIVDLDFD-ENDFKVLGEWVKKMNLTMPVYNIITPLPG 367


>gi|281412936|ref|YP_003347015.1| Radical SAM domain protein [Thermotoga naphthophila RKU-10]
 gi|281374039|gb|ADA67601.1| Radical SAM domain protein [Thermotoga naphthophila RKU-10]
          Length = 348

 Score = 53.0 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 42/259 (16%), Positives = 79/259 (30%), Gaps = 45/259 (17%)

Query: 138 ELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKR-------GVTAFLTIQEGCDKFC 190
           E LER  F + V+    S+ D+    ++       +R        + A +     C K C
Sbjct: 8   EKLERREFTREVLKEALSINDREFNEALFKLADEIRRKYVGDEVHIRAIIEFSNVCRKNC 67

Query: 191 TFCVVPYTRGIEISR--SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS 248
            +C +            +  ++V+ AR  +  G   I L         G+         S
Sbjct: 68  LYCGLRRDNKNLKRYRMTPEEIVERARLAVQFGAKTIVLQS-------GEDPYYMPDVIS 120

Query: 249 DLLYSLSE--------IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL--HLPVQSG 298
           D++  + +        +    R  Y           L++      VL   L      ++ 
Sbjct: 121 DIVREIKKMGVAVTLSLGEWPREYYEKWKEAGADRYLLRHETANPVLHRKLRPDTSFENR 180

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
            + +L      +                      +  +VG PG+T DD    +  + K  
Sbjct: 181 LNCLLTLKELGY-------------------ETGAGSMVGLPGQTIDDLVDDLLFLKKYD 221

Query: 359 YAQAFSFKYSPRLGTPGSN 377
           +       + P   TP +N
Sbjct: 222 FDMVGIGPFIPHPDTPLAN 240


>gi|168232927|ref|ZP_02657985.1| oxygen-independent coproporphyrinogen III oxidase [Salmonella
           enterica subsp. enterica serovar Kentucky str. CDC 191]
 gi|194472858|ref|ZP_03078842.1| oxygen-independent coproporphyrinogen III oxidase [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|194459222|gb|EDX48061.1| oxygen-independent coproporphyrinogen III oxidase [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|205332848|gb|EDZ19612.1| oxygen-independent coproporphyrinogen III oxidase [Salmonella
           enterica subsp. enterica serovar Kentucky str. CDC 191]
          Length = 457

 Score = 53.0 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 40/248 (16%), Positives = 87/248 (35%), Gaps = 20/248 (8%)

Query: 173 KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEI--TLLGQ 230
           +R ++ ++ I   C K C FC        +  +   Q +D   + I +         + Q
Sbjct: 50  ERPLSLYVHIPF-CHKLCYFCGCNKIVTRQQHK-ADQYLDALEQEIRHRAPLFADRHVSQ 107

Query: 231 NVNAWRGKGLDGEKCTFSDLLYSLSE-----IKGLVRLRYTTSHPRDMSDCLIKAHGDLD 285
            ++   G      K   S L+  L E         + +      PR++   ++       
Sbjct: 108 -LHWGGGTPTYLNKAQISRLMTLLRENFHFNTDAEISIEV---DPREIELDVLDHLRAEG 163

Query: 286 VLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS-DFIVGFPGETD 344
                L + VQ  +  + + +NR         +++  R +      ++ D I G P +T 
Sbjct: 164 --FNRLSMGVQDFNKEVQRLVNREQDEEFIFALLNHARDI--GFTSTNIDLIYGLPKQTP 219

Query: 345 DDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQV 403
           + F  T+  V ++   +   F Y+       +   ++  D     ++L  LQ+ +     
Sbjct: 220 ESFAFTLKRVTELNPDRLSVFNYAHLPTLFAAQRKIKDADLPSAQQKLDILQETIVSLTQ 279

Query: 404 SFNDACVG 411
           +     +G
Sbjct: 280 AGYQ-FIG 286


>gi|119575829|gb|EAW55425.1| CDK5 regulatory subunit associated protein 1-like 1, isoform
          CRA_a [Homo sapiens]
          Length = 99

 Score = 53.0 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 19/47 (40%), Gaps = 1/47 (2%)

Query: 11 AHMVSQIVDQCIVP-QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERV 56
              S   D  I   Q+ +++++GC  N  D   M     + GY+  
Sbjct: 49 EEENSPPSDSTIPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKIT 95


>gi|117922547|ref|YP_871739.1| coproporphyrinogen III oxidase [Shewanella sp. ANA-3]
 gi|117614879|gb|ABK50333.1| oxygen-independent coproporphyrinogen III oxidase [Shewanella sp.
           ANA-3]
          Length = 446

 Score = 53.0 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 36/236 (15%), Positives = 78/236 (33%), Gaps = 21/236 (8%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C K C +C         I+R   +       L    +    L           G  G   
Sbjct: 51  CAKLCYYC----GCNKVITRHAHKADQYIEYLSHEIIKRAPLFKHYTVTQMHWG--GGTP 104

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL-------MPYLHLPVQSG 298
           TF      + ++  L++  +  +   + S  +     +L +L          + + VQ  
Sbjct: 105 TF-LNPEQILKLTDLIKANFNFAAEGEFSIEVDPREIELSMLDTLKEAGFNRISIGVQDF 163

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           +  +  ++NR         ++ + ++    ++ + D I G P +T + F ATM  V  + 
Sbjct: 164 NKEVQVAVNREQDEQFIFDLMAKAKA-MGFVSTNIDLIYGLPHQTPETFAATMQRVLDLS 222

Query: 359 YAQAFSFKYSPRLGTPGSNM---LEQVDENVKAERLLCLQKKLREQQVSFNDACVG 411
             +   F Y+       +      E +      ++L  L + +     +     +G
Sbjct: 223 PDRLSVFNYAHLPARFAAQRKIKDEHLPSP--KQKLEMLHQTIETLTGAGYQ-YIG 275


>gi|300869227|ref|ZP_07113821.1| radical SAM family protein [Oscillatoria sp. PCC 6506]
 gi|300332772|emb|CBN59019.1| radical SAM family protein [Oscillatoria sp. PCC 6506]
          Length = 545

 Score = 53.0 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 51/238 (21%), Positives = 91/238 (38%), Gaps = 24/238 (10%)

Query: 177 TAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR 236
              + +   C + C FC+  Y      + S  + +  A +        + LLG +V    
Sbjct: 225 IYMVEVVRSCPEMCRFCLASYLTLPFRTASFEESLIPAIERGLTVTNRLGLLGASVTQH- 283

Query: 237 GKGLDGEKCTFSDLLYSLSEIK-GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPV 295
                     F  LL  LS+ K   VRL  ++     ++  L +     D     + + V
Sbjct: 284 --------PEFEGLLDYLSQPKYDEVRLSISSVRTNTVTVQLAETLAKRDT--RSITIAV 333

Query: 296 QSGSDRILKSMNRRHTAYEYRQI-IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           +SGS+R+ K +N++ +  E  Q  I+        I +    +VG PGE  +D   T+ ++
Sbjct: 334 ESGSERVRKIVNKKLSNDEIIQASINAKAGGLKGIKLYG--MVGIPGEKSEDLNETVAMM 391

Query: 355 DKIGYA------QAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFN 406
             I  +            + P+  TP       V++    +RL  L K L +  + F 
Sbjct: 392 RDIKKSAPGLRLTLGCSTFVPKSHTPFQWFG--VNKE-AEKRLKSLDKDLGKLGLEFR 446


>gi|18415808|ref|NP_568196.1| lipoic acid synthase family protein [Arabidopsis thaliana]
 gi|308191548|sp|Q8LEE8|LISC_ARATH RecName: Full=Lipoyl synthase, chloroplastic; AltName: Full=Lipoate
           synthase; Short=LS; Short=Lip-syn; AltName: Full=Lipoate
           synthase, plastidial; Short=LIP1p; AltName: Full=Lipoic
           acid synthase; Flags: Precursor
 gi|20373023|dbj|BAB91180.1| lipoic acid synthase [Arabidopsis thaliana]
 gi|98960967|gb|ABF58967.1| At5g08415 [Arabidopsis thaliana]
 gi|332003915|gb|AED91298.1| lipoyl synthase [Arabidopsis thaliana]
          Length = 394

 Score = 53.0 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 48/260 (18%), Positives = 94/260 (36%), Gaps = 24/260 (9%)

Query: 121 SPIVNVVVGPQTYYRLPELL-ERARFGKRVVDTDYS--------VEDKFERLSIVDGGYN 171
            P +    G     + P  L ++A  G+R  +   S        V ++ +  +I +    
Sbjct: 82  MPKMGPFTGRDPNVKKPAWLRQKAPQGERFQEVKESLSRLNLNTVCEEAQCPNIGECWNG 141

Query: 172 RKRGVTAFLTIQ---EGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLL 228
              GV A  TI    + C + C FC V  +R         +  + A+ +   GV  I + 
Sbjct: 142 GGDGV-ATATIMVLGDTCTRGCRFCAVKTSRNPPP-PDPMEPENTAKAIASWGVDYIVIT 199

Query: 229 GQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPR-DMSDCLIKAHGDLDVL 287
             +    R    DG    F+  + ++   K  + +   TS  R D+       H  LDV 
Sbjct: 200 SVD----RDDIPDGGSGHFAQTVKAMKRHKPDIMIECLTSDFRGDLEAVDTLVHSGLDVF 255

Query: 288 MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDF 347
              +         R+++     +   +   ++   +  +P +   +  ++G  GETD++ 
Sbjct: 256 AHNVETV--KRLQRLVRDPRAGY--EQSMSVLKHAKISKPGMITKTSIMLGL-GETDEEL 310

Query: 348 RATMDLVDKIGYAQAFSFKY 367
           +  M  +  I        +Y
Sbjct: 311 KEAMADLRAIDVDILTLGQY 330


>gi|291277136|ref|YP_003516908.1| hypothetical protein HMU09230 [Helicobacter mustelae 12198]
 gi|290964330|emb|CBG40180.1| conserved hypothetical protein [Helicobacter mustelae 12198]
          Length = 320

 Score = 53.0 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 35/91 (38%), Gaps = 2/91 (2%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +L   +QS  D  LK  NR H +    ++  R R     I + +  I G P E +D    
Sbjct: 164 WLEYGIQSVFDESLKRTNRGHLSAGIPELFSRTRD--HGIKVCAHLIYGLPQENEDMMLH 221

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
           ++D V   G              TP + M +
Sbjct: 222 SLDTVLDWGIDGIKIHPLYVVKDTPLAKMYK 252


>gi|282860335|ref|ZP_06269404.1| coproporphyrinogen dehydrogenase [Prevotella bivia JCVIHMP010]
 gi|282586932|gb|EFB92168.1| coproporphyrinogen dehydrogenase [Prevotella bivia JCVIHMP010]
          Length = 454

 Score = 53.0 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 36/191 (18%), Positives = 71/191 (37%), Gaps = 19/191 (9%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG--LDGE 243
           C + C +C          S  + +  +  +  +D    EI L+ Q++N  R       G 
Sbjct: 57  CRRLCHYC-------GCNSYPMQK-EEGVQTYVDALHKEIDLVVQHLNKSRRISQIHYGG 108

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAH---GDLDVL----MPYLHLPVQ 296
               S     L E+   +   + T    +++      +    D + L         + VQ
Sbjct: 109 GSPTSLPASVLQELNEHLLTSFPTIEQPEIAIECHPGYLEKKDWENLLAAHFNRFSIGVQ 168

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
                +LK +NR  +      I+  +R      +I+ DF+ G P +T + F+ T+    +
Sbjct: 169 DLDTEVLKIVNRTPSKLPLTVIMQILRE--GGASINMDFLFGLPHQTPESFQNTIHKAIE 226

Query: 357 IGYAQAFSFKY 367
           +   +  +F Y
Sbjct: 227 LYPDRLTTFSY 237


>gi|111225348|ref|YP_716142.1| biotin synthase [Frankia alni ACN14a]
 gi|123043930|sp|Q0RD46|BIOB_FRAAA RecName: Full=Biotin synthase
 gi|111152880|emb|CAJ64628.1| biotin synthetase [Frankia alni ACN14a]
          Length = 351

 Score = 53.0 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 36/206 (17%), Positives = 67/206 (32%), Gaps = 22/206 (10%)

Query: 185 GCDKFCTFC-VVPYTRGIEISR--SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD 241
           GC + C FC           S    +  +V+ AR+    G  E  ++     A RG    
Sbjct: 87  GCPEDCHFCSQSGKFDSPVRSAWLDVPSLVEAARQTAATGATEFCIVA----AVRGPDA- 141

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTS--HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
                 S +   ++ I+  V +    S           + A G    +  Y H    S S
Sbjct: 142 ---RLMSQVREGVAAIRAAVDINVACSLGMLTQDQVDELTAIG----VHRYNHNLETSRS 194

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
                 +   H+  E  +  + +R+    + +    I+G  GE+ +        +  +  
Sbjct: 195 HFP--KVVTTHSWEERWETCEMVRAA--GMELCCGAILGV-GESLEQRAELAAQLAVLEP 249

Query: 360 AQAFSFKYSPRLGTPGSNMLEQVDEN 385
            +      +PR GTP  +       +
Sbjct: 250 DEVPLNFLNPRPGTPFGDYPPVQPRD 275


>gi|332880703|ref|ZP_08448376.1| iron-only hydrogenase maturation rSAM protein HydE [Capnocytophaga
           sp. oral taxon 329 str. F0087]
 gi|332681337|gb|EGJ54261.1| iron-only hydrogenase maturation rSAM protein HydE [Capnocytophaga
           sp. oral taxon 329 str. F0087]
          Length = 382

 Score = 53.0 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 36/228 (15%), Positives = 78/228 (34%), Gaps = 25/228 (10%)

Query: 176 VTAFLTIQEGCDKFCTFCVVPYTRGIEISR---SLSQVVDEARKLIDNGVCEITLLGQNV 232
           +   + I   C   C +C +  +     SR   S  Q++D  R+    G     L G   
Sbjct: 84  IRGLVEISSWCRNNCYYCGLRRSN-RFASRYRLSQEQILDCCREGARLGFGTFVLQG--- 139

Query: 233 NAWRGKGLDGEKCTFSDLLYSL-SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL 291
               G+  + ++    +L+  L +E  G            ++      A  D        
Sbjct: 140 ----GEDGEQDEDWIEELVGKLRAEFPGHAITLSVGERDGEVYRRWRDAGADR------Y 189

Query: 292 HLPVQSGSDRILKSMNRR-HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
            L  ++ ++     ++ R       R+ +  ++++       +  +VG PG+T D     
Sbjct: 190 LLRHETRNEAHYALLHPREMDGARRRECLRTLKAL--GYQTGAGMMVGSPGQTWDCLLDD 247

Query: 351 MDLVDKIGYAQAFSFKYSPRLGTPGSNML-EQVDENVKAERLLCLQKK 397
           +  ++++         + P   TP +      V   +   RL+ L + 
Sbjct: 248 IAFLEELEPEMIGMGPFVPAAHTPFARHPAGSVSLTL---RLIALMRL 292


>gi|332670862|ref|YP_004453870.1| oxygen-independent coproporphyrinogen III oxidase [Cellulomonas
           fimi ATCC 484]
 gi|332339900|gb|AEE46483.1| oxygen-independent coproporphyrinogen III oxidase [Cellulomonas
           fimi ATCC 484]
          Length = 417

 Score = 53.0 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 50/248 (20%), Positives = 85/248 (34%), Gaps = 32/248 (12%)

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE----ISRS 206
           D D + +D     S+ DG   R  GV   +     C   C +C        E     S+ 
Sbjct: 7   DGDPAPDDGALPASVRDGAAARAFGVYLHVPF---CTVRCGYCDFNTYTATELGGGASQD 63

Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
                  A   +   V +    G    A     + G   T    +  L+ + G VR  + 
Sbjct: 64  AYAATALAEVGLAAHVLDAA--GLPARAVSTVFVGGGTPT-VLPVDDLARLLGGVRDTWG 120

Query: 267 TSHPRDMSDCLIKAHGDLDVLMP------------YLHLPVQSGSDRILKSMNRRHTAYE 314
            +   +++        + D + P             +   +QS    +L ++ R H    
Sbjct: 121 LTPDAEVTTE-----ANPDSVTPASLAALAAAGFTRVSFGMQSAVPHVLATLERTHDPRR 175

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
              ++   R     +A+S D I G PGE+ DD+RA+++     G     ++      GT 
Sbjct: 176 IPDVVRWARDA--GLAVSLDLIYGTPGESLDDWRASVETALATGVDHVSAYALVVEQGT- 232

Query: 375 GSNMLEQV 382
              M  QV
Sbjct: 233 --RMAVQV 238


>gi|261250083|ref|ZP_05942660.1| coproporphyrinogen III oxidase oxygen-independent [Vibrio
           orientalis CIP 102891]
 gi|260939587|gb|EEX95572.1| coproporphyrinogen III oxidase oxygen-independent [Vibrio
           orientalis CIP 102891]
          Length = 462

 Score = 53.0 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 41/253 (16%), Positives = 89/253 (35%), Gaps = 30/253 (11%)

Query: 173 KRGVTAFLTIQEGCDKFCTFC-----VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITL 227
           +R ++ ++ I   C K C +C     +  +    +    + ++    R  +  G     L
Sbjct: 55  ERPLSLYIHIPF-CHKLCYYCGCNKVITRHAHKADEYLDVLELEIRTRAALLQGRKVTQL 113

Query: 228 LGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL 287
                         G   TF      +S +  ++R  +      ++S  +     +LD+L
Sbjct: 114 -----------HFGGGTPTF-LTKAQISRVMAILRGEFYFEGDAEISIEVDPREIELDML 161

Query: 288 -------MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS-DFIVGF 339
                     L + VQ  +  + K +NR         ++ R + +      ++ D I G 
Sbjct: 162 DHLRGEGFNRLSIGVQDFNKEVQKLVNREQDEEFIVAMVARAKEL--GFRSTNLDLIYGL 219

Query: 340 PGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKL 398
           P +T D F  T+  V ++   +   F Y+       +   ++  D  +  E++  LQ  +
Sbjct: 220 PKQTKDSFAETLKQVLEMKPGRLSVFNYAHMPQLFAAQRKIKDEDLPIAEEKMAILQDTI 279

Query: 399 REQQVSFNDACVG 411
                +     +G
Sbjct: 280 ATLTGADYQ-FIG 291


>gi|257465698|ref|ZP_05630069.1| lipoyl synthase [Actinobacillus minor 202]
 gi|257451358|gb|EEV25401.1| lipoyl synthase [Actinobacillus minor 202]
          Length = 325

 Score = 53.0 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 31/214 (14%), Positives = 67/214 (31%), Gaps = 10/214 (4%)

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           + +    E  S  +       G   F+ +   C + C FC V    G  +     +    
Sbjct: 66  HGLHSVCEEASCPNLHECFNHGTATFMIMGAICTRRCPFCDV--AHGKPLPLDPEEPRKV 123

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
           A  + D  +  + +   +    R    D     F+  +  +  +    ++        D 
Sbjct: 124 AETVQDMKLKYVVITSVD----RDDLPDRGAAHFAATVREIKALNPDCKVEILVP---DF 176

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
              + +A   L    P +         R+ + +          +++   +   P+I   S
Sbjct: 177 RGRVEQAVAILKQNPPDVFNHNLENVPRLYREVRPGADYKWSLELLKIFKQEFPNIPTKS 236

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
             +VG  GET+++    M  +   G       +Y
Sbjct: 237 GLMVGL-GETNEEILEVMQDLRDHGVTMLTIGQY 269


>gi|296126672|ref|YP_003633924.1| Radical SAM domain protein [Brachyspira murdochii DSM 12563]
 gi|296018488|gb|ADG71725.1| Radical SAM domain protein [Brachyspira murdochii DSM 12563]
          Length = 803

 Score = 53.0 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 45/247 (18%), Positives = 84/247 (34%), Gaps = 27/247 (10%)

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           V + +     K   + +V+G  NR       + I  GC   C FC+   T     +R++ 
Sbjct: 219 VENINEMPYVKKPLVPLVEGIQNRIS-----VEIARGCTHSCRFCLAGITYRPVRNRTIE 273

Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK--CTFSDLLYSLSEIKGLVRLRYT 266
           ++VD + + ++         G N         D         + L +L E KG   L   
Sbjct: 274 KIVDISMESLEA-------TGANTLNLFSLSADDYPHIADLIEYLQTLGEHKG-FSLSLP 325

Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
           +                       L   ++ GS  + + +N+         I+  ++ + 
Sbjct: 326 SLRIDSFDKDTANRIAQFRK--TGLTFALEVGSHELREKINKEMDEEAIYNILADVQKMG 383

Query: 327 PDIAISSDFIVGF----PGETDDDFRATMDLVD----KIGYAQAFSFKYSPRLGTPGSNM 378
             I +   F++GF      E D+   A   ++     K+    A    + P+  TP  N 
Sbjct: 384 WKI-VKIYFMIGFTDNPDKEADEIIEALEKMIKVSKNKVKI-NAAINVFIPKPHTPLENT 441

Query: 379 LEQVDEN 385
            +  DE 
Sbjct: 442 NQLTDEE 448


>gi|168334672|ref|ZP_02692812.1| Radical SAM domain protein [Epulopiscium sp. 'N.t. morphotype B']
          Length = 589

 Score = 53.0 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 56/298 (18%), Positives = 90/298 (30%), Gaps = 51/298 (17%)

Query: 130 PQTYYRLPELLERARFGKRVV-----------DTDYSVEDKFERLSIVDGGYNRKRGVTA 178
               YR   L+E    G  VV           + D   E +FE              +  
Sbjct: 235 NADPYRGKPLMEEYEKGWYVVQNPPTEPLNTLELDDVYEMQFENKPHPMYKEEIAAAIET 294

Query: 179 FLTIQ--EGCDKFCTFCVVPYTRGIEIS-RSLSQVVDEARKLIDN----------GVCEI 225
             +I    GC   C+FC + + +G  +S RS   +V EA K+  +          G    
Sbjct: 295 QFSITSNRGCFGSCSFCALTFHQGRIVSGRSTESMVREATKMTQHPDFKGYIHDVGGPSA 354

Query: 226 TLLGQNV-------NAWRGKGLDGEKCTFSDL--------LYSLSEIKGLVR------LR 264
             + Q              K L  E C   D+        L  L  + G+ +      +R
Sbjct: 355 NFMAQQCKNISKRGTCKDRKCLYPEPCKVLDVDHEKYMNTLRKLRNLDGVKKVFIRSGIR 414

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           Y        S  +IK   D   +   L +  +  ++  L+ M +      Y + +    +
Sbjct: 415 YDYLLQDKNSKKIIKEIADN-HVSGQLRVAPEHIAENTLRYMRKP-KKNIYERFVSEFNN 472

Query: 325 VRPDIA----ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
              D      +   F+   PG T  D         K G        + P   T  + M
Sbjct: 473 ASKDSNKKQYVVPYFMSSHPGTTLADAIELAIYFKKNGQNPEQVQDFYPTPSTLATCM 530


>gi|332877454|ref|ZP_08445201.1| hypothetical protein HMPREF9074_00932 [Capnocytophaga sp. oral
           taxon 329 str. F0087]
 gi|332684560|gb|EGJ57410.1| hypothetical protein HMPREF9074_00932 [Capnocytophaga sp. oral
           taxon 329 str. F0087]
          Length = 307

 Score = 53.0 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 78/222 (35%), Gaps = 19/222 (8%)

Query: 126 VVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEG 185
           V    + Y++     +    G    D    + ++ +R+      Y      TA+  +  G
Sbjct: 48  VFSFTEDYHQYINNADCIEKGGTGYDIQKFLPEQIDRMQPDYSLYPSIDHKTAYGFLTRG 107

Query: 186 CDKFCTFCVVPYTRGIEISR-SLSQVVDEARKLI----------DNGVCEI-TLLGQNVN 233
           C   C +CVVP   G       + ++  E RK I          D G+ +I  ++  N++
Sbjct: 108 CPNKCKWCVVPKKEGNIRPYMDIEEIAIEGRKNIILMDNNILASDYGLSQIEKIIRLNLH 167

Query: 234 AWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHL 293
               +GLD    T  D+   L+++K +  +R+      D    +I+      ++  Y + 
Sbjct: 168 VDFNQGLDARLVT-DDIAKLLAKVKWIKCIRFGC----DTPKQIIECERATALIEKYGYK 222

Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDF 335
                   +L           Y +  ++ R   P      D 
Sbjct: 223 GEYFFYCILLDDFKESFNRVNYWR--NKGRRYLPHAQPYRDL 262


>gi|295099654|emb|CBK88743.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Eubacterium cylindroides T2-87]
          Length = 357

 Score = 53.0 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 32/185 (17%), Positives = 75/185 (40%), Gaps = 18/185 (9%)

Query: 186 CDKFCTFCVVPYTRGIE--ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
           CD  C +C        E   S+ ++Q+++E ++   +    +   G   ++         
Sbjct: 11  CDSICAYCDFCRIITNEDTKSKWMAQIIEEIKQKNIHKADTLYFGGGTPSS--------- 61

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
                +    ++ +  + +      +P  +    I+ +  L   +  + L VQ+ +DR+L
Sbjct: 62  --LTCEQFKKIASLFNVSKEFTVECNPESLDLEKIQLYKKLG--VNRISLGVQTFNDRLL 117

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           K +NR+H   +  Q+I  ++    D  IS D +   P ++ +D +  +++   +      
Sbjct: 118 KVINRKHRKEDIFQVIQLLKENGID-NISIDLMYALPEQSLEDIKKDLEIF--LDLDIKH 174

Query: 364 SFKYS 368
              YS
Sbjct: 175 LSIYS 179


>gi|260893108|ref|YP_003239205.1| Radical SAM domain protein [Ammonifex degensii KC4]
 gi|260865249|gb|ACX52355.1| Radical SAM domain protein [Ammonifex degensii KC4]
          Length = 360

 Score = 53.0 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 32/240 (13%), Positives = 76/240 (31%), Gaps = 23/240 (9%)

Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
            E+L   R G+   +  ++  D+          + R     A +     C   C +C + 
Sbjct: 23  EEILCLLRAGEEEAEVLFTAADRVRAKVFGPVVHLR-----AVIEFSNFCRNNCLYCGLR 77

Query: 197 YTRGIEISRSLSQ--VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL 254
                     ++   VV  A +    G   + L         G+         ++++  +
Sbjct: 78  RENRRLPRYRMAAREVVQAAEEAAAQGFKTVVLQS-------GEDPYWTPERLAEVVKEI 130

Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
            ++   V L        +    L +A  D         L  ++    +   +    +   
Sbjct: 131 KKLGVAVTLSVGELD-YEDYALLKEAGADR------YLLRHETADPSLFAQLKPDSSLAR 183

Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
            RQ ++ ++ +       +  +VG PG++ +     +  + ++    A    + P   TP
Sbjct: 184 RRQCLEWLKEL--GYETGAGCMVGLPGQSLESLAEDVLFMRELQVEMAGIGPFIPHPDTP 241


>gi|212704732|ref|ZP_03312860.1| hypothetical protein DESPIG_02795 [Desulfovibrio piger ATCC 29098]
 gi|212671859|gb|EEB32342.1| hypothetical protein DESPIG_02795 [Desulfovibrio piger ATCC 29098]
          Length = 325

 Score = 53.0 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 32/181 (17%), Positives = 62/181 (34%), Gaps = 15/181 (8%)

Query: 207 LSQVVDEARKLIDNGVCEIT------LLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260
           + +++  A   +     +          G    A   + LD       D+  SL     +
Sbjct: 1   MDEILARAANDLRARRAQGRPPVELAFYGGTFTALAPRDLD----ACLDMADSLLRDGCI 56

Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320
            R R +T  P  +   L+            + L +QS SD  L++  R ++  +  +   
Sbjct: 57  TRFRCST-RPDRLDAALLARLRRHG--CRTVELGIQSFSDTALQASERHYSGRQAAEACR 113

Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
            +R     +A+    + G PG   +DF A +     +G      +      GT  +   +
Sbjct: 114 LVRDA--GLALGVQLLPGMPGHQPEDFLADVRRALSLGADMLRFYPCLVLAGTELARRWQ 171

Query: 381 Q 381
           Q
Sbjct: 172 Q 172


>gi|116250146|ref|YP_765984.1| coproporphyrinogen III oxidase [Rhizobium leguminosarum bv. viciae
           3841]
 gi|115254794|emb|CAK05868.1| putative oxygen-independent coprophorphyrinogen III oxidase
           [Rhizobium leguminosarum bv. viciae 3841]
          Length = 400

 Score = 53.0 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 31/209 (14%), Positives = 69/209 (33%), Gaps = 30/209 (14%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQ-------VVDEARKLIDNGVCEITLLGQNVNAWRGK 238
           C   C +C           + + Q       + + A     +G   +T +          
Sbjct: 33  CAAKCPYC---DFNSHVRHQPVDQERFTSAFLTEMAAVRSMSGPKTVTSI---------- 79

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY-------L 291
            L G   +        + + G+ R  +      +++     +  + +    Y       +
Sbjct: 80  FLGGGTPSLMKPETVSAILDGIAR-HWHVPDGIEITMEANPSSVEAERFRGYRAAGVNRV 138

Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351
            L VQ+ +DR LK + R H   +  + I   R + P ++   D I   P +T +++   +
Sbjct: 139 SLGVQALNDRDLKFLGRLHDVADALKAIRLARDIFPRMSF--DLIYARPEQTVEEWEKEL 196

Query: 352 DLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380
                        ++ +   GTP   + +
Sbjct: 197 KEAISYAVDHLSLYQLTIEEGTPFYGLHK 225


>gi|110643452|ref|YP_671182.1| hypothetical protein ECP_3299 [Escherichia coli 536]
 gi|191174418|ref|ZP_03035921.1| radical SAM protein, TIGR01212 family [Escherichia coli F11]
 gi|227887932|ref|ZP_04005737.1| radical SAM protein [Escherichia coli 83972]
 gi|300979940|ref|ZP_07174792.1| radical SAM protein, TIGR01212 family [Escherichia coli MS 200-1]
 gi|301047942|ref|ZP_07194987.1| radical SAM protein, TIGR01212 family [Escherichia coli MS 185-1]
 gi|110345044|gb|ABG71281.1| hypothetical protein YhcC [Escherichia coli 536]
 gi|190905308|gb|EDV64944.1| radical SAM protein, TIGR01212 family [Escherichia coli F11]
 gi|227835328|gb|EEJ45794.1| radical SAM protein [Escherichia coli 83972]
 gi|300300174|gb|EFJ56559.1| radical SAM protein, TIGR01212 family [Escherichia coli MS 185-1]
 gi|300307875|gb|EFJ62395.1| radical SAM protein, TIGR01212 family [Escherichia coli MS 200-1]
 gi|307555304|gb|ADN48079.1| radical SAM protein [Escherichia coli ABU 83972]
 gi|315294871|gb|EFU54210.1| radical SAM protein family [Escherichia coli MS 153-1]
 gi|320194696|gb|EFW69326.1| hypothetical protein EcoM_03138 [Escherichia coli WV_060327]
 gi|324012145|gb|EGB81364.1| radical SAM protein, TIGR01212 family [Escherichia coli MS 60-1]
          Length = 309

 Score = 53.0 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 43/237 (18%), Positives = 75/237 (31%), Gaps = 36/237 (15%)

Query: 181 TIQEGCDKFCTFCVV-PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
           TI  G    CTFC V  +    +  RS+++ +     L++     +              
Sbjct: 39  TIGRG---GCTFCNVASFADEAQQHRSIAEQLAHQANLVNRAKRYLAYF-----QAYTST 90

Query: 240 LDGEKCTFSDLLYSLSE--IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQS 297
               +   S    ++S+  I GL  +        D    L+  + D    + +L L +Q+
Sbjct: 91  FAEVQVLRSMYQQAVSQANIVGLC-VGTRPDCVPDAVLDLLCEYKDQGYEV-WLELGLQT 148

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
             D+ L  +NR H    Y++     R     + + S  IVG PGE   +   T++ V + 
Sbjct: 149 AHDKTLHRINRGHDFACYQRTTQLARER--GLKVCSHLIVGLPGEGQAECLQTLERVVET 206

Query: 358 GYAQAFSFKYSPRLG---------------------TPGSNMLEQVDENVKAERLLC 393
           G             G                          M+      V   R+  
Sbjct: 207 GVDGIKLHPLHIVKGSIMAKAWEAGRLNGIELEDYTLTAGEMIRHTPPEVIYHRISA 263


>gi|118579732|ref|YP_900982.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Pelobacter propionicus DSM 2379]
 gi|118502442|gb|ABK98924.1| coproporphyrinogen III oxidase, anaerobic [Pelobacter propionicus
           DSM 2379]
          Length = 381

 Score = 53.0 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 36/210 (17%), Positives = 65/210 (30%), Gaps = 18/210 (8%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C   C +C      G    R     + +A   + +        G            G   
Sbjct: 12  CLHKCPYCAFISQEGSPARREAYVELLQAEMRLAHA-------GIPSGRPLESVYFGGGT 64

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLH-------LPVQSG 298
                   +  I  L    ++     +++        D   L  + H       L VQS 
Sbjct: 65  PSLLEPDQIGRILSLADTLFSLLPHAEITLEANPGTIDRAKLAGFRHSGVNRLSLGVQSL 124

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
            DR+L S+ R H+A +  Q +   R+      I  D I   PG+T + +R  ++    + 
Sbjct: 125 DDRMLASLGRIHSAAQAEQAVKAARAT-GFANIGIDLIHALPGQTMEMWRHDLERALDLA 183

Query: 359 YAQAFSFKYSPRLGTPGS---NMLEQVDEN 385
                 +  +   GTP +        + + 
Sbjct: 184 PEHLSVYGLTIEEGTPFAQRYTHDRDLPDE 213


>gi|71021139|ref|XP_760800.1| hypothetical protein UM04653.1 [Ustilago maydis 521]
 gi|46100277|gb|EAK85510.1| hypothetical protein UM04653.1 [Ustilago maydis 521]
          Length = 785

 Score = 53.0 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 33/209 (15%), Positives = 66/209 (31%), Gaps = 22/209 (10%)

Query: 167 DGGYNRKRGVTAFLTIQ-EGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEI 225
            GG   K   TA + I  + C + C FC V  +R         +  + A  +   G+  I
Sbjct: 526 WGGSGGKDTATATIMIMGDTCTRGCRFCAVKTSRAPA-PLDPHEPENTAEAISRWGLGYI 584

Query: 226 TLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLD 285
            L   +    R    DG     +     +S+IK   R     +   D S         ++
Sbjct: 585 VLTSVD----RDDIADGGASHIAST---ISKIKAKSRKILVEALVPDFSGD----MACVE 633

Query: 286 VLMPYLHLPVQS------GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGF 339
            +                 +  +++    ++       ++   +   P +   +  ++G 
Sbjct: 634 KVAHSGVDVFAHNVETVERTTPMVRDRRAKYRQS--LAVLLHAKQANPALITKTSIMLG- 690

Query: 340 PGETDDDFRATMDLVDKIGYAQAFSFKYS 368
            GE DD+   T+  +           +Y 
Sbjct: 691 CGERDDEVEQTLRDLRNAHVDVVTFGQYM 719


>gi|331649011|ref|ZP_08350099.1| radical SAM protein, family [Escherichia coli M605]
 gi|323951270|gb|EGB47145.1| SAM protein [Escherichia coli H252]
 gi|323957641|gb|EGB53355.1| SAM protein [Escherichia coli H263]
 gi|331042758|gb|EGI14900.1| radical SAM protein, family [Escherichia coli M605]
          Length = 320

 Score = 53.0 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 43/237 (18%), Positives = 75/237 (31%), Gaps = 36/237 (15%)

Query: 181 TIQEGCDKFCTFCVV-PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
           TI  G    CTFC V  +    +  RS+++ +     L++     +              
Sbjct: 50  TIGRG---GCTFCNVASFADEAQQHRSIAEQLAHQANLVNRAKRYLAYF-----QAYTST 101

Query: 240 LDGEKCTFSDLLYSLSE--IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQS 297
               +   S    ++S+  I GL  +        D    L+  + D    + +L L +Q+
Sbjct: 102 FAEVQVLRSMYQQAVSQANIVGLC-VGTRPDCVPDAVLDLLCEYKDQGYEV-WLELGLQT 159

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
             D+ L  +NR H    Y++     R     + + S  IVG PGE   +   T++ V + 
Sbjct: 160 AHDKTLHRINRGHDFACYQRTTQLARER--GLKVCSHLIVGLPGEGQAECLQTLERVVET 217

Query: 358 GYAQAFSFKYSPRLG---------------------TPGSNMLEQVDENVKAERLLC 393
           G             G                          M+      V   R+  
Sbjct: 218 GVDGIKLHPLHIVKGSIMAKAWEAGRLNGIELEDYTLTAGEMIRHTPPEVIYHRISA 274


>gi|323700762|ref|ZP_08112674.1| lipoic acid synthetase [Desulfovibrio sp. ND132]
 gi|323460694|gb|EGB16559.1| lipoic acid synthetase [Desulfovibrio desulfuricans ND132]
          Length = 279

 Score = 53.0 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 30/183 (16%), Positives = 59/183 (32%), Gaps = 11/183 (6%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC +    G       ++    A       +  + +        R    DG   
Sbjct: 59  CTRNCAFCNI--ASGDMEPLDPTEPARVAEAARRLKLRHVVITSVT----RDDLEDGGSA 112

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
            F+  + ++ E+     +       +     L         ++ +    V    D I   
Sbjct: 113 HFAACIRAVREVLPDCTVEVLIPDFQGSEPALKTVLDAGPNVLNHNLETVPVLYDHIRPQ 172

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
            + R    +   +++  + +RPDI   S  +VG  GETD+     +D +  I        
Sbjct: 173 ADYR----QSLAVLENAKRLRPDIPTKSGIMVGL-GETDEQIMTVLDDLAAIDCDIVTIG 227

Query: 366 KYS 368
           +Y 
Sbjct: 228 QYM 230


>gi|291614770|ref|YP_003524927.1| lipoic acid synthetase [Sideroxydans lithotrophicus ES-1]
 gi|291584882|gb|ADE12540.1| lipoic acid synthetase [Sideroxydans lithotrophicus ES-1]
          Length = 311

 Score = 53.0 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 75/217 (34%), Gaps = 14/217 (6%)

Query: 153 DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVD 212
           ++ +    E  S  + G    +G  +F+ + + C + C FC V    G  +     +  +
Sbjct: 52  EHKLHTVCEEASCPNIGECFGKGTASFMILGDVCTRRCPFCDV--AHGKPLPPDADEPGN 109

Query: 213 EARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
            A  +    +  + +   +    R    DG    F+D L ++       +L       R 
Sbjct: 110 LAHSIGLLKLRYVVITSVD----RDDLRDGGAKHFADCLTAIRATSPGTKLETLVPDFRG 165

Query: 273 MSDCLIKAHGD-LDVLMPYLHLPVQSGSDRILKSMNRRH-TAYEYRQIIDRIRSVRPDIA 330
             D  + A  + L  ++ +        +   L  M R         +++   ++  P + 
Sbjct: 166 RLDIALDALAESLPDVLNHNL-----ETVPRLYPMARPGADYAHSLKLLKDFKARFPQVT 220

Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
             S  ++G  GETD++    M  +           +Y
Sbjct: 221 TKSGLMLGL-GETDEEVLQVMRDLRAHDVEMLTLGQY 256


>gi|227548786|ref|ZP_03978835.1| coproporphyrinogen dehydrogenase [Corynebacterium lipophiloflavum
           DSM 44291]
 gi|227079116|gb|EEI17079.1| coproporphyrinogen dehydrogenase [Corynebacterium lipophiloflavum
           DSM 44291]
          Length = 367

 Score = 53.0 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 76/223 (34%), Gaps = 17/223 (7%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN---GVCEITLLGQNVNAWRGKGLDG 242
           C   C +C        E+  S    +      +        +   +G    +  G     
Sbjct: 11  CATRCGYCDFNTYTPTEVETSHETYLRALETELAKADTSPADTVFIGGGTPSLLGA---- 66

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
                  ++  +    GL      T+     S       G L+     + L +QS S  +
Sbjct: 67  --AGLGRIMEMVHTHVGLKPGAEVTTESNPESTSPEYFEGLLEAGFTRVSLGMQSASTPV 124

Query: 303 LKSMNRRHTAYEYRQII-DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
           LK ++R HT       + + + +    + +  D I G P ETDDD RAT+D V   G   
Sbjct: 125 LKVLDRMHTPGRAVAAVKEALDAGFEHVNL--DMIYGTPTETDDDVRATLDAVLSTGVDH 182

Query: 362 AFSFKYSPRLGTPGSN--MLEQVD---ENVKAERLLCLQKKLR 399
             ++      GT  +      ++    E+V A+R   +   L 
Sbjct: 183 VSAYSLIVEDGTAMARKVRRGELPAPSEDVYADRYEIISSTLE 225


>gi|163750421|ref|ZP_02157661.1| hypothetical protein KT99_05372 [Shewanella benthica KT99]
 gi|161329911|gb|EDQ00897.1| hypothetical protein KT99_05372 [Shewanella benthica KT99]
          Length = 639

 Score = 53.0 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 37/196 (18%), Positives = 68/196 (34%), Gaps = 21/196 (10%)

Query: 180 LTIQEGCDKF-CTFCVVPYTRGIEISRSLSQV-VDEARKLIDNGVCEITLLGQNVNAWRG 237
           LTI  GC    C+FC V          + + + VD   +LI+         GQ       
Sbjct: 362 LTIAHGCYWRKCSFCDVSLDYIDRYDTAGADILVDRIEQLIEE-------TGQ-TGFHFV 413

Query: 238 KGLDGEKCTFSDLLYSLSE---IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP 294
                 K  F+     +     I     +R+     R  S    +   D   +       
Sbjct: 414 DEALPPKTLFALAKRLIERKVVISWWGNIRF----ERTFSPARCQLLADSGCIAVSG--G 467

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           ++  SDR+LK M +  +      +     +    I + +  + GFP +T+ +   ++++V
Sbjct: 468 LEVASDRLLKLMKKGVSVERVGHVTKSFSNA--GILVHAYLMYGFPTQTEQETIDSLEMV 525

Query: 355 DKIGYAQAFSFKYSPR 370
            ++     F   Y  R
Sbjct: 526 RQMMEQGCFQSAYWHR 541


>gi|154504968|ref|ZP_02041706.1| hypothetical protein RUMGNA_02478 [Ruminococcus gnavus ATCC 29149]
 gi|153794851|gb|EDN77271.1| hypothetical protein RUMGNA_02478 [Ruminococcus gnavus ATCC 29149]
          Length = 648

 Score = 53.0 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 46/302 (15%), Positives = 89/302 (29%), Gaps = 53/302 (17%)

Query: 125 NVVVGPQTYYRLPELLERARFGKRVVDTDYSVED----KFERLSIVDGGYNRKRGVTAFL 180
           +   G +      E L   +       T   ++D     F R +  D         TA +
Sbjct: 256 DPFSGKRLVEPYSEHLYVVQNPPAKPLTQMEMDDVYALPFTRCAHPDYEKLGGVPATAEI 315

Query: 181 TIQ----EGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARK------------------- 216
                   GC   C+FC + + +G  + +RS   ++ EA++                   
Sbjct: 316 KFSLISNRGCFGGCSFCALTFHQGRIVQTRSHESLLQEAKEITQDPDFKGYIHDVGGPTA 375

Query: 217 ------LIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL--------VR 262
                         +    Q +     K L+ +   +  LL  L ++  +        +R
Sbjct: 376 NFRHPSCEKQMTKGVCKTKQCLFPTPCKNLNADHKDYVALLRKLRKVPKVKKVFIRSGIR 435

Query: 263 LRYTTSHPRD-MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
             Y  +   D     L + H     +   L +  +  SD +L  M +      Y     +
Sbjct: 436 FDYLLADADDTFLKELCEYH-----VSGQLKVAPEHVSDPVLSMMGKPAN-NVYETFTKK 489

Query: 322 IRSVRPDIA----ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
             ++   I     +    +   PG T  +     +    +GY       + P   T  + 
Sbjct: 490 FYAMNQKIGKEQYLVPYLMSSHPGSTLKEAVELAEYCRDLGYMPEQVQDFYPTPSTISTC 549

Query: 378 ML 379
           M 
Sbjct: 550 MY 551


>gi|332300088|ref|YP_004442009.1| oxygen-independent coproporphyrinogen III oxidase [Porphyromonas
           asaccharolytica DSM 20707]
 gi|332177151|gb|AEE12841.1| oxygen-independent coproporphyrinogen III oxidase [Porphyromonas
           asaccharolytica DSM 20707]
          Length = 371

 Score = 53.0 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 40/202 (19%), Positives = 64/202 (31%), Gaps = 16/202 (7%)

Query: 186 CDKFCTFCVV-PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK 244
           C   C +C     +     S  +  +  E     D G   +           G       
Sbjct: 11  CPTRCIYCDFYSQSDLSLQSAFVEALCRELTIYCDRG---LWATAPRTIYLGGGTPSSLP 67

Query: 245 CTFSDLLYSLSEIKGLVRL-----RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
                L   +  I  L RL         ++P D+S    +    L      + L VQS S
Sbjct: 68  --LPLLERLMQHIHSLWRLDKSIEITIEANPEDVSPEWARGVAQLG--FNRISLGVQSLS 123

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS-DFIVGFPGETDDDFRATMDLVDKIG 358
           D  L+ + RRH+A +    I  IR     I+  S D I   P   +  +  ++     + 
Sbjct: 124 DETLRFLQRRHSAAQAELAISYIREA--GISNVSIDLIFALPKGYEQHWFESLAHALVLP 181

Query: 359 YAQAFSFKYSPRLGTPGSNMLE 380
                ++  +   GT    M E
Sbjct: 182 VTHLSAYGLTYESGTRLDRMRE 203


>gi|320353708|ref|YP_004195047.1| Radical SAM domain-containing protein [Desulfobulbus propionicus
           DSM 2032]
 gi|320122210|gb|ADW17756.1| Radical SAM domain protein [Desulfobulbus propionicus DSM 2032]
          Length = 439

 Score = 53.0 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 33/223 (14%), Positives = 74/223 (33%), Gaps = 27/223 (12%)

Query: 175 GVTAFLTIQEGCDKFCTFCVVPYTRGIEISR---SLSQVVDEARKLIDNGVCEITLLGQN 231
            +   + I   C + C +C +      ++SR   S  +++D A + +  G   + L    
Sbjct: 40  HLRGLVEISNYCARSCHYCGL-RAPNRQVSRYRLSAEEILDCADQAVRLGYGTLVLQS-- 96

Query: 232 VNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL 291
                G+    E    + LL  +     L           D      +A  D        
Sbjct: 97  -----GEDDRIEAEWLASLLRHIKATTPLALTLSLGERSEDDLRIWREAGADR------Y 145

Query: 292 HLPVQSGSDRILKSMN--RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
            L  ++    + ++++  R     +   ++ +++S+       S  +VG PG++      
Sbjct: 146 LLRFETSDRALYRAIHPDRGARVSDRLALLRQLKSL--GYETGSGVMVGIPGQSYAILAD 203

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTP----GSNMLE--QVDENV 386
            + L  ++         +     TP     S +    QV  ++
Sbjct: 204 DILLFRELDLDMIGIGPFIAHPDTPLGQAASPLPGETQVPPSI 246


>gi|318604059|emb|CBY25557.1| putative Fe-S oxidoreductase [Yersinia enterocolitica subsp.
           palearctica Y11]
          Length = 300

 Score = 53.0 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 2/83 (2%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +L L +Q+ +D+ LK +NR H    Y+Q   R R+    + +    IVG PGE       
Sbjct: 141 WLELGLQTANDKTLKHINRGHDFACYQQTARRARAR--GLKVCCHLIVGLPGEEQAQCME 198

Query: 350 TMDLVDKIGYAQAFSFKYSPRLG 372
           T++ V   G             G
Sbjct: 199 TLEKVVATGVDGIKLHPLHIVEG 221


>gi|283778265|ref|YP_003369020.1| lipoic acid synthetase [Pirellula staleyi DSM 6068]
 gi|283436718|gb|ADB15160.1| lipoic acid synthetase [Pirellula staleyi DSM 6068]
          Length = 318

 Score = 53.0 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 28/182 (15%), Positives = 57/182 (31%), Gaps = 11/182 (6%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V   RG     S  +    A      G+  + +        R    DG   
Sbjct: 87  CTRPCGFCAV--DRGRPAPLSQDEPERLAEAAARLGLKHVVITSVT----RDDLRDGGAD 140

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
            +   + ++    G   +   T       + L +       +  +     ++      K 
Sbjct: 141 HYVRCIQAVRARTGAA-IEVLTPDFVTCPEALDRVIDARPDVFNHNT---ETVPRLYRKV 196

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
              +       ++++RI+   P I   S  ++G  GE   +   T+  +  +G       
Sbjct: 197 RGPKSDYRWTLRLLERIKERDPSIKTKSGLMLGL-GEERQELLDTLADLRSVGCDFLTLG 255

Query: 366 KY 367
           +Y
Sbjct: 256 QY 257


>gi|290960046|ref|YP_003491228.1| hypothetical protein SCAB_56611 [Streptomyces scabiei 87.22]
 gi|260649572|emb|CBG72687.1| conserved hypothetical protein [Streptomyces scabiei 87.22]
          Length = 652

 Score = 53.0 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 43/302 (14%), Positives = 86/302 (28%), Gaps = 60/302 (19%)

Query: 113 EGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK------------------------- 147
            G  +L   P V+ +V          LL +   G+                         
Sbjct: 186 MGRALLAHYPAVDAIVDGPGEDAFVTLLRQVAAGEPPHSHGRLITRLPAAPGSAPTPISA 245

Query: 148 -RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK----FCTFCVVPYTRGIE 202
            R ++      D F       G +  +  +T  +    GC       CTFC +       
Sbjct: 246 GRSLEVPTPDYDGFFEQLHAAGLHTLEPEITLPVEFSRGCWWGAKTHCTFCGLNGASMTY 305

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
            S++   V DE R L+D     +     +                  L  +L  ++ L  
Sbjct: 306 RSKNPDTVADELRHLMDR-YGVLDFFAVD-----------NILDLKYLDTALPLVEKLAT 353

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
              +       +             +  +   ++S S   L+ + +  TA++  + +  +
Sbjct: 354 DH-SLFFEVKANMEWADIRAARRAGVRSVQPGIESLSTEGLRLLKKGATAFQNIRFL--L 410

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVD-------------KIGYAQAFSFKYSP 369
                 +    + + GFP ET +     +DL+               + + +     Y  
Sbjct: 411 GCAEFGVLPVWNILTGFPHETPESMLTQIDLLPSLTHLEPPDNDILAVHFDR--FSPYVE 468

Query: 370 RL 371
           R 
Sbjct: 469 RP 470


>gi|118593719|ref|ZP_01551094.1| coproporphyrinogen III oxidase [Stappia aggregata IAM 12614]
 gi|118433729|gb|EAV40391.1| coproporphyrinogen III oxidase [Stappia aggregata IAM 12614]
          Length = 384

 Score = 53.0 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 36/197 (18%), Positives = 64/197 (32%), Gaps = 10/197 (5%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLG----QNVNAWRGKGLD 241
           C   C +C           + + Q    A            L      Q+V    G    
Sbjct: 17  CAAKCPYC---DFNSHVRHQPVDQA-RFAAAFERELSHFADLTKNKKVQSVFLGGGTPSL 72

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
            E  T   +L ++S+   +      +      S    +  G     +  + L VQS  D 
Sbjct: 73  MEPATVDRILKAVSDRWSMDENVEISLEANPSSVEAERFRGYRSAGVNRVSLGVQSLIDT 132

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
            L+ + R H A   R  I+  R+  P ++   D I   PG+T   +   ++    +    
Sbjct: 133 DLRLLGRLHDARTARTAIETARATFPRLSF--DLIYARPGQTLAGWEQELNEAIALAADH 190

Query: 362 AFSFKYSPRLGTPGSNM 378
              ++ +   GTP   +
Sbjct: 191 LSLYQLTIEEGTPFHTL 207


>gi|56415850|ref|YP_152925.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197364780|ref|YP_002144417.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|56130107|gb|AAV79613.1| oxygen-independent coproporphyrinogen III oxidase [Salmonella
           enterica subsp. enterica serovar Paratyphi A str. ATCC
           9150]
 gi|197096257|emb|CAR61855.1| oxygen-independent coproporphyrinogen III oxidase [Salmonella
           enterica subsp. enterica serovar Paratyphi A str.
           AKU_12601]
          Length = 457

 Score = 53.0 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 40/248 (16%), Positives = 87/248 (35%), Gaps = 20/248 (8%)

Query: 173 KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEI--TLLGQ 230
           +R ++ ++ I   C K C FC        +  +   Q +D   + I +         + Q
Sbjct: 50  ERPLSLYVHIPF-CHKLCYFCGCNKIVTRQQHK-ADQYLDALEQEIRHRAPLFADRHVSQ 107

Query: 231 NVNAWRGKGLDGEKCTFSDLLYSLSE-----IKGLVRLRYTTSHPRDMSDCLIKAHGDLD 285
            ++   G      K   S L+  L E         + +      PR++   ++       
Sbjct: 108 -LHWGGGTPTYLNKAQISRLMTLLRENFHFNTDAEISIEV---DPREIELDVLDHLRAEG 163

Query: 286 VLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS-DFIVGFPGETD 344
                L + VQ  +  + + +NR         +++  R +      ++ D I G P +T 
Sbjct: 164 --FNRLSMGVQDFNKEVQRLVNREQDEEFIFALLNHARDI--GFTSTNIDLIYGLPKQTP 219

Query: 345 DDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQV 403
           + F  T+  V ++   +   F Y+       +   ++  D     ++L  LQ+ +     
Sbjct: 220 ESFAFTLKRVTELNPDRLSVFNYAHLPTLFAAQRKIKDADLPSAQQKLDILQETIVSLTQ 279

Query: 404 SFNDACVG 411
           +     +G
Sbjct: 280 AGYQ-FIG 286


>gi|16762428|ref|NP_458045.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|16767269|ref|NP_462884.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|29143916|ref|NP_807258.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|161617126|ref|YP_001591091.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica
           serovar Paratyphi B str. SPB7]
 gi|167995109|ref|ZP_02576199.1| oxygen-independent coproporphyrinogen III oxidase [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|168237618|ref|ZP_02662676.1| oxygen-independent coproporphyrinogen III oxidase [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
 gi|168263105|ref|ZP_02685078.1| oxygen-independent coproporphyrinogen III oxidase [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
 gi|194737499|ref|YP_002116924.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|204930367|ref|ZP_03221344.1| oxygen-independent coproporphyrinogen III oxidase [Salmonella
           enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
 gi|213162856|ref|ZP_03348566.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica
           serovar Typhi str. E00-7866]
 gi|213425464|ref|ZP_03358214.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica
           serovar Typhi str. E02-1180]
 gi|213612841|ref|ZP_03370667.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
 gi|238913944|ref|ZP_04657781.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
 gi|289829359|ref|ZP_06546971.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-3139]
 gi|60392332|sp|P0A1E1|HEMN_SALTY RecName: Full=Oxygen-independent coproporphyrinogen-III oxidase;
           Short=Coprogen oxidase; Short=Coproporphyrinogenase
 gi|60392333|sp|P0A1E2|HEMN_SALTI RecName: Full=Oxygen-independent coproporphyrinogen-III oxidase;
           Short=Coprogen oxidase; Short=Coproporphyrinogenase
 gi|25284567|pir||AD0950 oxygen-independent coproporphyrinogen III oxidase [imported] -
           Salmonella enterica subsp. enterica serovar Typhi
           (strain CT18)
 gi|509500|gb|AAA19690.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Salmonella enterica subsp. enterica serovar
           Typhimurium]
 gi|16422566|gb|AAL22843.1| O2-independent coproporphyrinogen III oxidase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|16504733|emb|CAD03096.1| oxygen-independent coproporphyrinogen III oxidase [Salmonella
           enterica subsp. enterica serovar Typhi]
 gi|29139552|gb|AAO71118.1| oxygen-independent coproporphyrinogen III oxidase [Salmonella
           enterica subsp. enterica serovar Typhi str. Ty2]
 gi|161366490|gb|ABX70258.1| hypothetical protein SPAB_04966 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194713001|gb|ACF92222.1| oxygen-independent coproporphyrinogen III oxidase [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           CVM19633]
 gi|197289446|gb|EDY28811.1| oxygen-independent coproporphyrinogen III oxidase [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
 gi|204320771|gb|EDZ05973.1| oxygen-independent coproporphyrinogen III oxidase [Salmonella
           enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
 gi|205327147|gb|EDZ13911.1| oxygen-independent coproporphyrinogen III oxidase [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|205348306|gb|EDZ34937.1| oxygen-independent coproporphyrinogen III oxidase [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
 gi|261249120|emb|CBG26981.1| oxygen-independent coproporphyrinogen III oxidase [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           D23580]
 gi|267996287|gb|ACY91172.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|301160511|emb|CBW20041.1| oxygen-independent coproporphyrinogen III oxidase [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           SL1344]
 gi|312915117|dbj|BAJ39091.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|321225288|gb|EFX50346.1| Coproporphyrinogen III oxidase, oxygen-independent [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           TN061786]
 gi|322613074|gb|EFY10024.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322619145|gb|EFY16028.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322626011|gb|EFY22823.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322626531|gb|EFY23337.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322632358|gb|EFY29106.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322635162|gb|EFY31883.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322642761|gb|EFY39350.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322647926|gb|EFY44398.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322650676|gb|EFY47077.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322652859|gb|EFY49196.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322657174|gb|EFY53454.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322662340|gb|EFY58555.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322666875|gb|EFY63051.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322672145|gb|EFY68260.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322675867|gb|EFY71939.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322681719|gb|EFY77745.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322684088|gb|EFY80097.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|323193360|gb|EFZ78575.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323197717|gb|EFZ82850.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323200711|gb|EFZ85782.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323207286|gb|EFZ92238.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323211488|gb|EFZ96329.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|323218468|gb|EGA03176.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323221052|gb|EGA05484.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
 gi|323226027|gb|EGA10246.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
 gi|323231707|gb|EGA15819.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323236046|gb|EGA20124.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323239534|gb|EGA23583.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323243874|gb|EGA27885.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323249236|gb|EGA33153.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323250522|gb|EGA34405.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323258976|gb|EGA42628.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323260221|gb|EGA43844.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
 gi|323265340|gb|EGA48837.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323270562|gb|EGA54008.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
 gi|332990832|gb|AEF09815.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. UK-1]
          Length = 457

 Score = 53.0 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 40/248 (16%), Positives = 87/248 (35%), Gaps = 20/248 (8%)

Query: 173 KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEI--TLLGQ 230
           +R ++ ++ I   C K C FC        +  +   Q +D   + I +         + Q
Sbjct: 50  ERPLSLYVHIPF-CHKLCYFCGCNKIVTRQQHK-ADQYLDALEQEIRHRAPLFADRHVSQ 107

Query: 231 NVNAWRGKGLDGEKCTFSDLLYSLSE-----IKGLVRLRYTTSHPRDMSDCLIKAHGDLD 285
            ++   G      K   S L+  L E         + +      PR++   ++       
Sbjct: 108 -LHWGGGTPTYLNKAQISRLMTLLRENFHFNTDAEISIEV---DPREIELDVLDHLRAEG 163

Query: 286 VLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS-DFIVGFPGETD 344
                L + VQ  +  + + +NR         +++  R +      ++ D I G P +T 
Sbjct: 164 --FNRLSMGVQDFNKEVQRLVNREQDEEFIFALLNHARDI--GFTSTNIDLIYGLPKQTP 219

Query: 345 DDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQV 403
           + F  T+  V ++   +   F Y+       +   ++  D     ++L  LQ+ +     
Sbjct: 220 ESFAFTLKRVTELNPDRLSVFNYAHLPTLFAAQRKIKDADLPSAQQKLDILQETIVSLTQ 279

Query: 404 SFNDACVG 411
           +     +G
Sbjct: 280 AGYQ-FIG 286


>gi|325292766|ref|YP_004278630.1| lipoic acid synthetase [Agrobacterium sp. H13-3]
 gi|325060619|gb|ADY64310.1| lipoic acid synthetase [Agrobacterium sp. H13-3]
          Length = 334

 Score = 53.0 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 27/194 (13%), Positives = 68/194 (35%), Gaps = 11/194 (5%)

Query: 174 RGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVN 233
           +    F+ + E C + C FC V    G   +  + +  + A+ +   G+  + +   +  
Sbjct: 86  KKHATFMIMGEICTRACAFCNV--ATGKPNALDMDEPENVAKAVKQMGLSHVVITSVD-- 141

Query: 234 AWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHL 293
             R    DG    F  +++++        +   T         L +       +  +   
Sbjct: 142 --RDDLADGGAEHFEKVIWAIRAASPNTTIEILTPDFLKKPGALERVVAAKPDVFNH--- 196

Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
            +++     L ++      +   +++ R++ + P +   S  +VG  GE  ++    MD 
Sbjct: 197 NMETVPGNYL-TVRPGARYFHSVRLLQRVKELDPTMFTKSGIMVGL-GEERNEVLQLMDD 254

Query: 354 VDKIGYAQAFSFKY 367
           +           +Y
Sbjct: 255 LRSADVDFLTIGQY 268


>gi|257066667|ref|YP_003152923.1| oxygen-independent coproporphyrinogen III oxidase [Anaerococcus
           prevotii DSM 20548]
 gi|256798547|gb|ACV29202.1| oxygen-independent coproporphyrinogen III oxidase [Anaerococcus
           prevotii DSM 20548]
          Length = 372

 Score = 53.0 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 38/203 (18%), Positives = 79/203 (38%), Gaps = 20/203 (9%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQN----VNAWRGKGLD 241
           C+K C +C      G+E               IDN + EI L  +N    ++     G  
Sbjct: 13  CEKKCYYCDFAAFEGLE---------AWIDPYIDNLIKEIRLYKENMDLAIDTIYIGGGT 63

Query: 242 GEKCTFSDLLYSLSEIKG---LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
                   +   L E++G    ++      +P  +    ++A+ DL   +  + L VQS 
Sbjct: 64  PSYIDPLYIEKILREVRGFDTDIKEFSLECNPNSIDSDKLQAYKDLG--VTRISLGVQSF 121

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
            D++L+++ R H      + I  I+S      +S D ++  PG+     +  +++V ++ 
Sbjct: 122 DDKVLRNIGRNHNKEIAIRDIKLIKSF--GFDLSFDLMLNLPGQDLASVKKDLEMVKRLS 179

Query: 359 YAQAFSFKYSPRLGTPGSNMLEQ 381
                 +      G+    + ++
Sbjct: 180 PDHVSRYSLILDKGSRFYALDKK 202


>gi|332969911|gb|EGK08913.1| TIGR01212 family radical SAM protein [Desmospora sp. 8437]
          Length = 342

 Score = 53.0 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 32/193 (16%), Positives = 63/193 (32%), Gaps = 15/193 (7%)

Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDE---ARKLIDNGVCEITLLG--QNVNAWRGKGLDG 242
             CTFC  P   G         +V +    R  +     +   +G  Q+ +         
Sbjct: 64  GGCTFCS-PRGSGDFAGDRRQDLVKQFNTVRDRMHQKWPKAKYIGYFQSFSNTY-----A 117

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLD-VLMPYLHLPVQSGSDR 301
                  +  ++ E   +V L    + P  + D +++   +L+     ++ L +Q+  D 
Sbjct: 118 PVDVLRPMYEAILEQPDVVGLSI-ATRPDCLPDDVVELLAELNQRTYLWVELGLQTIHDS 176

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
             + +NR H    +   + ++R  R  I      I G P E+ +    T      +    
Sbjct: 177 TSELINRGHDYACFLDGVAKLR--RHGIRTCVHIIHGLPQESVEMMLETAQACAAMDIQG 234

Query: 362 AFSFKYSPRLGTP 374
                      TP
Sbjct: 235 IKIHSLHLLRKTP 247


>gi|328952325|ref|YP_004369659.1| Radical SAM domain protein [Desulfobacca acetoxidans DSM 11109]
 gi|328452649|gb|AEB08478.1| Radical SAM domain protein [Desulfobacca acetoxidans DSM 11109]
          Length = 588

 Score = 53.0 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 42/239 (17%), Positives = 82/239 (34%), Gaps = 25/239 (10%)

Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTA--------FLTIQEGCDK 188
           PE  E     +  V   +    +   L  +D      R +           + I  GC +
Sbjct: 205 PEYDEDGTMRRMAVAPGFPATIRPPHLMNLDAYPVHSRLLAPGGEFSRMFLVEINRGCGR 264

Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS 248
            C FC   +      SRS + + D+ R  +  G   I L+G  V          +     
Sbjct: 265 GCRFCAAGFIYRPPRSRSAATLHDQVRLGLATGAK-IGLVGTAV---------ADHPEIL 314

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
           DL   ++     V L    +   D    L          +  + L  ++G++R+ + +N+
Sbjct: 315 DLCRWITTAGQQVGLSSIRADRAD--RELFDLLKKGG--VKSVALAPETGNERMRRVINK 370

Query: 309 RHTAYEYRQIIDRIRSVRPDIA-ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366
             +  +  Q +  + +    ++ +   F+ G P ET  D      L  ++ +A     +
Sbjct: 371 GLSEVQLEQAVINLHAA--GLSHLRLYFMAGLPTETRQDIADIPHLTKRLQHAVVKHSQ 427


>gi|329120419|ref|ZP_08249085.1| oxygen-independent coproporphyrinogen III oxidase [Neisseria
           bacilliformis ATCC BAA-1200]
 gi|327462103|gb|EGF08431.1| oxygen-independent coproporphyrinogen III oxidase [Neisseria
           bacilliformis ATCC BAA-1200]
          Length = 608

 Score = 53.0 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 33/204 (16%), Positives = 76/204 (37%), Gaps = 18/204 (8%)

Query: 186 CDKFCTFC-VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK 244
           C   C FC         E S++ +  V  A    + G+ +    G  + A    G     
Sbjct: 62  CANHCVFCGFYRNAWKDEQSKTYTDKV-IAELAQEAGIRQG---GGKIRAVYFGGGTPTA 117

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMS-------DCLIKAHGDLDVLMPYLHLPVQS 297
               DL+  +             +   + +           KA   +D  +  + + VQ+
Sbjct: 118 LLTGDLVRLIRA----CYQYLPLADDCEFTLEGRMSHFDPDKAQAAIDAGVTRISIGVQT 173

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
               I + + R+H+  E    ++R+  +  +  + +D I G PG++ + ++  + +   +
Sbjct: 174 FDTAIRRRLGRKHSGEEAAAYLERLGRL--NTVLVADLIFGLPGQSGEIWQNDLHIAAAL 231

Query: 358 GYAQAFSFKYSPRLGTPGSNMLEQ 381
             A   ++ ++     P + M+E+
Sbjct: 232 PLAGLDTYAFNCYPFLPINRMIEK 255


>gi|326440949|ref|ZP_08215683.1| hypothetical protein SclaA2_07765 [Streptomyces clavuligerus ATCC
           27064]
          Length = 637

 Score = 53.0 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 65/399 (16%), Positives = 120/399 (30%), Gaps = 67/399 (16%)

Query: 70  CHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG 129
           C +     + V      +R  K +    G + ++                   + +  +G
Sbjct: 160 CAVIGDGEQAVLDMTRIVREWKAAGRPGGREEVLFRLARTGNIYVPGFYDVEYLPDGRIG 219

Query: 130 --PQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCD 187
                   +P  + +      V+D D     K   + + +  + R       + I  GC 
Sbjct: 220 RVVPNRSGVPWRVSK----HTVMDLDEWPYPKQPLVPLAETVHERMS-----VEIFRGCT 270

Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCT 246
           + C FC           RS++ + +   K +   G  E+ LL     +       GE   
Sbjct: 271 RGCRFCQAGMITRPVRERSITGIGEMVEKGLKATGFEEVGLLS---LSSADHSEIGEIAK 327

Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306
                Y+  +I     L   ++     +  L             L    + GS+R+ K +
Sbjct: 328 GLADRYTEDKIG----LSLPSTRVDAFNVDLANELTRNGR-RSGLTFAPEGGSERMRKVI 382

Query: 307 NRRHTAYEYRQIIDR-----IRSVRPDIAISSDFIVGFPGETDDDFRATMDLV------- 354
           N+  +  +  + +        R V+        F+ G P ETD+D     D+        
Sbjct: 383 NKMVSEEDLIRTVATAYGNGWRQVK------LYFMCGLPTETDEDVLQIGDMAVNVIAKG 436

Query: 355 ------DKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLR--------- 399
                   I         + P+  TP      Q+       RL  L+ K+R         
Sbjct: 437 REVSGSQDIRCT-VSIGGFVPKPHTP-FQWAPQLSAEDTDARLAKLRDKIRGDKKYGRSI 494

Query: 400 ------------EQQVSFNDACVGQIIEVLIEKHGKEKG 426
                       E  +S  D  +G +I  + E  G+  G
Sbjct: 495 GFRYHDGKPGIVEGLLSRGDRRIGAVIRAVYEDGGRFDG 533


>gi|228993060|ref|ZP_04152983.1| Oxygen-independent coproporphyrinogen III oxidase 1 [Bacillus
           pseudomycoides DSM 12442]
 gi|228766708|gb|EEM15348.1| Oxygen-independent coproporphyrinogen III oxidase 1 [Bacillus
           pseudomycoides DSM 12442]
          Length = 378

 Score = 53.0 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 38/223 (17%), Positives = 80/223 (35%), Gaps = 25/223 (11%)

Query: 186 CDKFCTFCVVPYTRGIEISRSL---------SQVVDEARKLIDNGVCEITLLGQNVNAWR 236
           C   C +C       + I R            ++++  +K+    +  I + G    A  
Sbjct: 11  CQHICHYC---DFNKVFIERQPVDQYLEYLEKEIINTVQKVPFENMKTIFVGGGTPTAL- 66

Query: 237 GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQ 296
              ++  K     +   L        L +  ++P D+    +     LD  +  +   VQ
Sbjct: 67  --NVEQTKKLLDIINRRLRPFAPNCELTFE-ANPGDLPKEKLNLL--LDGGVNRISFGVQ 121

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA-ISSDFIVGFPGETDDDFRATMDLVD 355
           +  D +L+ + R+HT  +    I   + V      I+ D I   PG+T +D + T+D+  
Sbjct: 122 TFRDELLQKIGRKHTREDAFVAIREAQEV--GFTNINVDLIYALPGQTIEDVKETLDIAF 179

Query: 356 KIGYAQAFSFKYSPRLGTPGSNMLEQ----VDENVKAERLLCL 394
            +G     ++       T   N++ +    +       R+  +
Sbjct: 180 TLGVQHFSAYSLIVEPKTIFYNLMNKGKLRLPGEEHEARMYEI 222


>gi|220903451|ref|YP_002478763.1| hypothetical protein Ddes_0165 [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|219867750|gb|ACL48085.1| conserved hypothetical protein [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 347

 Score = 53.0 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 39/93 (41%), Gaps = 4/93 (4%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +L L +QS  +  L+ +NR H        + +       +A+    + G PGE +  F  
Sbjct: 175 WLELGLQSAHNATLRRINRGHDTACSETAVRQAAER--GLAVCGHLMAGLPGEDEAAFLE 232

Query: 350 TMDLVDKIGYAQAFSF-KYSPRLGTPGSNMLEQ 381
           ++D    +  +       Y PR GT  + + E+
Sbjct: 233 SLDWALSLPLSGLKLHNVYVPR-GTSLARLYEE 264


>gi|156934852|ref|YP_001438768.1| lipoyl synthase [Cronobacter sakazakii ATCC BAA-894]
 gi|166230417|sp|A7MNP9|LIPA_ENTS8 RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|74095592|emb|CAJ27358.1| strongly similar to lipoyl synthase [Cronobacter sakazakii]
 gi|156533106|gb|ABU77932.1| hypothetical protein ESA_02700 [Cronobacter sakazakii ATCC BAA-894]
          Length = 321

 Score = 53.0 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 30/183 (16%), Positives = 66/183 (36%), Gaps = 12/183 (6%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V    G  ++   ++    A+ + D  +  + +   +    R    DG   
Sbjct: 94  CTRRCPFCDV--AHGRPVAPDANEPQKLAQTIADMALRYVVITSVD----RDDLRDGGAQ 147

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAH-GDLDVLMPYLHLPVQSGSDRILK 304
            F+D + ++ E    +++       R   D  ++        +  +    V     R+ +
Sbjct: 148 HFADCITAIREKSPSIKIETLVPDFRGRMDRALEILTATPPDVFNHNLENV----PRLYR 203

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
            +          ++++R +   P+I   S  +VG  GET+ +    M  +   G      
Sbjct: 204 QVRPGADYNWSLKLLERFKEAHPEIPTKSGLMVGL-GETNAEIIEVMRDLRAHGVTMLTL 262

Query: 365 FKY 367
            +Y
Sbjct: 263 GQY 265


>gi|167037849|ref|YP_001665427.1| radical SAM domain-containing protein [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|167040746|ref|YP_001663731.1| radical SAM domain-containing protein [Thermoanaerobacter sp. X514]
 gi|300914784|ref|ZP_07132100.1| Radical SAM domain protein [Thermoanaerobacter sp. X561]
 gi|307723982|ref|YP_003903733.1| Radical SAM domain-containing protein [Thermoanaerobacter sp. X513]
 gi|320116266|ref|YP_004186425.1| Radical SAM domain-containing protein [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
 gi|166854986|gb|ABY93395.1| Radical SAM domain protein [Thermoanaerobacter sp. X514]
 gi|166856683|gb|ABY95091.1| Radical SAM domain protein [Thermoanaerobacter pseudethanolicus
           ATCC 33223]
 gi|300889719|gb|EFK84865.1| Radical SAM domain protein [Thermoanaerobacter sp. X561]
 gi|307581043|gb|ADN54442.1| Radical SAM domain protein [Thermoanaerobacter sp. X513]
 gi|319929357|gb|ADV80042.1| Radical SAM domain protein [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
          Length = 617

 Score = 53.0 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 54/286 (18%), Positives = 103/286 (36%), Gaps = 24/286 (8%)

Query: 71  HIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGP 130
            +  +  E +   +    + K  R +    L +V     +Q +G  + +    V    G 
Sbjct: 163 FVMGEGEEVINEIIDAYIDWKKKRGEREEFLQIV-----SQIKGVYVPKYYIEVYNQDGT 217

Query: 131 QTYYRLPELLERARFGKRVV-DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKF 189
               R  +     +  KR+V D +     + + +  +D  ++R       L I  GC + 
Sbjct: 218 IKEIRTIKKGVPEKVKKRIVKDFENVYHPEEQIVPFMDIVHDR-----IMLEIFRGCTRG 272

Query: 190 CTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFS 248
           C FC           +S  +++D A KLI + G  EI+L   +   +             
Sbjct: 273 CRFCQAGMIYRPVREKSKEKILDLADKLIKSTGYEEISLTSLSTCDY---------SQIE 323

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY-LHLPVQSGSDRILKSMN 307
           DL+  L E      +  +    R  +   I    ++  +    L L  ++G+ R+   +N
Sbjct: 324 DLVKKLIEKYKDKGVGVSIPSTRVDAVS-INLLKEIQKVRKTGLTLAPEAGTQRLRDVIN 382

Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
           +  T     +      S      +   F++G P ET +D    +DL
Sbjct: 383 KGITEENILEATKEAFSAGWT-NVKLYFMIGLPTETMEDVEGIVDL 427


>gi|332709825|ref|ZP_08429782.1| coproporphyrinogen III oxidase, anaerobic [Lyngbya majuscula 3L]
 gi|332351423|gb|EGJ31006.1| coproporphyrinogen III oxidase, anaerobic [Lyngbya majuscula 3L]
          Length = 381

 Score = 53.0 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/161 (17%), Positives = 67/161 (41%), Gaps = 11/161 (6%)

Query: 213 EARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
              + ++    EI +     ++       G   +    +  L++I   +  R+  +   +
Sbjct: 13  MIDQYVEVLCQEINITPPTTSSLDTVFFGGGTPSL-LTVEQLAKILDTLDRRFGIAADAE 71

Query: 273 MSDCLI-------KAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
           +S  +        +  G  D+ +  + L VQ+  D++L +  R H + +    I+ I  V
Sbjct: 72  ISMEMDPGTFNKDQLTGYRDLGVNRVSLGVQAFQDKLLSNCGRTHDSKDIVTAIELIHQV 131

Query: 326 -RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
             P+ ++  D I G P +T + ++ ++++  KI      S+
Sbjct: 132 EVPEFSL--DLISGLPAQTLEQWQESLEITVKIAPTHISSY 170


>gi|307262078|ref|ZP_07543732.1| Lipoyl synthase [Actinobacillus pleuropneumoniae serovar 12 str.
           1096]
 gi|306868257|gb|EFN00080.1| Lipoyl synthase [Actinobacillus pleuropneumoniae serovar 12 str.
           1096]
          Length = 319

 Score = 53.0 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/214 (13%), Positives = 66/214 (30%), Gaps = 10/214 (4%)

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           + +    E  S  +       G   F+ +   C + C FC V    G  +     +    
Sbjct: 60  HGLHSVCEEASCPNLHECFNHGTATFMIMGAICTRRCPFCDV--AHGKPLPLDPEEPRKV 117

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
           A  + D  +  + +   +    R    D     F+  +  +  +    ++       R  
Sbjct: 118 AETVQDMKLKYVVITSVD----RDDLADRGAAHFAATVREIKALNPECKVEILVPDFRGR 173

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
            +  ++         P +         R+ + +          +++   +   P+I   S
Sbjct: 174 VEQAVEILKQNP---PDVFNHNLENVPRLYREVRPGADYKWSLELLKIFKQEFPNIPTKS 230

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
             +VG  GET+++    M  +   G       +Y
Sbjct: 231 GLMVGL-GETNEEILEVMQDLRDHGVTMLTIGQY 263


>gi|307250872|ref|ZP_07532800.1| Lipoyl synthase [Actinobacillus pleuropneumoniae serovar 4 str.
           M62]
 gi|306857122|gb|EFM89250.1| Lipoyl synthase [Actinobacillus pleuropneumoniae serovar 4 str.
           M62]
          Length = 319

 Score = 53.0 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/214 (13%), Positives = 66/214 (30%), Gaps = 10/214 (4%)

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           + +    E  S  +       G   F+ +   C + C FC V    G  +     +    
Sbjct: 60  HGLHSVCEEASCPNLHECFNHGTATFMIMGAICTRRCPFCDV--AHGKPLPLDPEEPRKV 117

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
           A  + D  +  + +   +    R    D     F+  +  +  +    ++       R  
Sbjct: 118 AETVQDMKLKYVVITSVD----RDDLADRGAAHFAATVREIKALNPECKVEILVPDFRGR 173

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
            +  ++         P +         R+ + +          +++   +   P+I   S
Sbjct: 174 VEQAVEILKQNP---PDVFNHNLENVPRLYREVRPGADYKWSLELLKIFKQEFPNIPTKS 230

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
             +VG  GET+++    M  +   G       +Y
Sbjct: 231 GLMVGL-GETNEEILEVMQDLRDHGVTMLTIGQY 263


>gi|291279553|ref|YP_003496388.1| Fe-S oxidoreductases family protein [Deferribacter desulfuricans
           SSM1]
 gi|290754255|dbj|BAI80632.1| Fe-S oxidoreductases family protein [Deferribacter desulfuricans
           SSM1]
          Length = 787

 Score = 53.0 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 46/238 (19%), Positives = 84/238 (35%), Gaps = 25/238 (10%)

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
           KR +   +S E   +   + +      R     L I  GC + C FC   +       R 
Sbjct: 206 KRFIYNKFSEEGFIKAPLVPNFSVVHDR---ISLEISRGCTRGCRFCQAGFIYRPSRERD 262

Query: 207 LSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           +  +++ A   ++N G  EI+ L  +   +             +LL  L+ I     +  
Sbjct: 263 VKSLINNALVQLENSGYFEISFLSLSAADY---------TKLEELLDKLNSIVYDKNVSV 313

Query: 266 TTSHPR-DMSDCLIKAHGDLDVLMPY-LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
           +    R D     I    +L  +      +  ++GS R+   +N+  T  E  + +   +
Sbjct: 314 SLPSVRADQIKSFI--FRELSKVRKSGFTIAPEAGSQRLRNIINKNLTEEEIIEAVKLAK 371

Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDL---VDKI---GYA-QAFSFKYSPRLGTP 374
               +      F++G P E   D  A  DL   + KI    +        + P+  TP
Sbjct: 372 EGGFN-HAKLYFMIGLPFEEISDVIAIADLAYKIKKIVGKRFDISVSVSNFVPKPHTP 428


>gi|255654780|ref|ZP_05400189.1| putative radical SAM superfamily protein [Clostridium difficile
           QCD-23m63]
 gi|296449525|ref|ZP_06891302.1| radical SAM domain protein [Clostridium difficile NAP08]
 gi|296878152|ref|ZP_06902167.1| radical SAM domain protein [Clostridium difficile NAP07]
 gi|296261589|gb|EFH08407.1| radical SAM domain protein [Clostridium difficile NAP08]
 gi|296430905|gb|EFH16737.1| radical SAM domain protein [Clostridium difficile NAP07]
          Length = 312

 Score = 53.0 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 39/237 (16%), Positives = 88/237 (37%), Gaps = 31/237 (13%)

Query: 174 RGVTAFLTIQEGCDKFCTFC---VVPYTRGIEISR------SLSQVVDEARKLIDNGVCE 224
              TA++ I E C   C+FC   +   TR  ++SR      S  +++D  +      +  
Sbjct: 22  PPTTAYIMIGEKCINKCSFCSQSIESSTRKDKLSRVVWPEFSKEEILDALKAYKGKNIKR 81

Query: 225 ITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAH-GD 283
           I +  Q++ +         +   + +L  ++ I G + +  + S   +  + + K     
Sbjct: 82  ICI--QSMAS---------EEAHNSVLDFINYISGKIDMPISLSAKLENDEQINKFFSAG 130

Query: 284 LDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGET 343
           +D +   +       +++ L    + +   E  + I  +    P+  IS+  IVG  GE+
Sbjct: 131 VDKIGIAID-----AANKELYEKIKGNNYNEKLKFITEMSKSYPN-KISTHIIVGM-GES 183

Query: 344 DDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLRE 400
            +D       +          F ++P  GT    + +         R+  +   + +
Sbjct: 184 HEDIYNLYTYLKGNDIT-ISLFAFTPVRGTKMEKINQ--PNIESYRRVQLMSYMINK 237


>gi|226531846|ref|NP_001150279.1| lipoyl synthase 1, chloroplastic [Zea mays]
 gi|308191443|sp|B6TN12|LISC1_MAIZE RecName: Full=Lipoyl synthase 1, chloroplastic; AltName:
           Full=Lipoate synthase 1; Short=LS 1; Short=Lip-syn 1;
           AltName: Full=Lipoate synthase, plastidial 1;
           Short=LIP1p 1; AltName: Full=Lipoic acid synthase 1;
           Flags: Precursor
 gi|195638054|gb|ACG38495.1| lipoic acid synthetase [Zea mays]
          Length = 361

 Score = 53.0 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 54/289 (18%), Positives = 98/289 (33%), Gaps = 26/289 (8%)

Query: 96  KEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-ERARFGKRVVDTDY 154
           + G   LV VA C A+A                G     + P  L +RA  G++      
Sbjct: 17  RGGRRGLVAVARCHAEAAPPVGTASRAPAGPYTGRDPEVKKPAWLRQRAAQGEKYARLRE 76

Query: 155 SVED-------------KFERLSIVDGGYNRKRGVTAFLTIQ---EGCDKFCTFCVVPYT 198
           S+ +                      GG   +    A  TI    + C + C FC V  T
Sbjct: 77  SIGELKLNTVCVEAQCPNIGECWNGGGGAGGEGDGIATATIMVLGDTCTRGCRFCAVK-T 135

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258
                     + ++ A  +   GV  + L   +    R    DG    F+  + +L E+K
Sbjct: 136 SNKPPPPDPLEPLNTALAVASWGVDYVVLTSVD----RDDLPDGGSSHFAQTVKALKELK 191

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
             + +   TS  R      I +     + +   ++       RI++     +   +   +
Sbjct: 192 PGILVECLTSDFRG-DLEAISSLASSGLDVYAHNIETVRSLQRIVRDPRAGY--DQSLAV 248

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           +   ++ R  +   S  ++G  GETD++ +  M  +  IG       +Y
Sbjct: 249 LKHAKACREGMVTKSSIMLGL-GETDEEVKQAMMDLRAIGVDILTLGQY 296


>gi|68535757|ref|YP_250462.1| biotin synthase [Corynebacterium jeikeium K411]
 gi|123734607|sp|Q4JWG3|BIOB_CORJK RecName: Full=Biotin synthase
 gi|68263356|emb|CAI36844.1| biotin synthase [Corynebacterium jeikeium K411]
          Length = 357

 Score = 53.0 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 34/206 (16%), Positives = 72/206 (34%), Gaps = 32/206 (15%)

Query: 185 GCDKFCTFC-VVPYTRGIEISR--SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD 241
           GC + C FC           S    ++Q+++ A++    G  E  ++     A +G   D
Sbjct: 92  GCPEDCHFCAQSGLFESPVRSIQLDIAQLIEAAKQTAKTGATEFCIVA----AVKGPDED 147

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
                 + +  +++ I+  V +    S    ++   +    +L V             + 
Sbjct: 148 ----LMNQMAKAIAAIQAEVDINIAASIGI-LTQEQVDRLKELGV----------HRYNH 192

Query: 302 ILKSMNR-------RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
            L++           HT  E    ++ +R     + +    IVG  GET +        +
Sbjct: 193 NLETCKSYFPEVVTTHTWEERTSTLEMVRDA--GMEVCCGGIVGM-GETVEQRAEFAIDL 249

Query: 355 DKIGYAQAFSFKYSPRLGTPGSNMLE 380
             +   +     + PR GTP +++  
Sbjct: 250 QNLDPTEVPLNFFDPRPGTPFADLEP 275


>gi|291514881|emb|CBK64091.1| radical SAM protein, TIGR01212 family [Alistipes shahii WAL 8301]
          Length = 323

 Score = 53.0 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 41/260 (15%), Positives = 76/260 (29%), Gaps = 26/260 (10%)

Query: 181 TIQEGCDKFCTFCV----VPYTRGIEISR--SLSQVVDEARKLIDNGVCEITLLGQNVNA 234
           TI EG    CTFC      P       S    +++ ++  R    +    +         
Sbjct: 43  TIGEG---GCTFCNNGAFTPSYCMPSKSVGQQIAEGIEFHRNRYRSAQRYLVYF------ 93

Query: 235 WRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP 294
                          L        G+  +   T         L    G        L   
Sbjct: 94  QAFSNTYAPLERLKRLYDEALAHPGVAGIVVGTRPDCVDERKLDYFAGLARDRYVALEYG 153

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           ++S  D  L+++NR H     R+ ++   +    + + + FI+G PGETD      ++ +
Sbjct: 154 IESTFDATLRAVNRGHDFACARRAVEMTAAR--GLHVGAHFILGLPGETDAMLLDQVERI 211

Query: 355 DKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQII 414
           + +        +      TP +   +   E  +            E              
Sbjct: 212 NALPLTTVKFHQLQVFRATPMAAEYDAAPERFRFWEPEEYIDLFVEILRRLRPG------ 265

Query: 415 EVLIEKHGKE--KGKLVGRS 432
            V++E+   E       GR+
Sbjct: 266 -VVVERFASEAPPRYHYGRN 284


>gi|262378383|ref|ZP_06071540.1| lipoyl synthase [Acinetobacter radioresistens SH164]
 gi|262299668|gb|EEY87580.1| lipoyl synthase [Acinetobacter radioresistens SH164]
          Length = 327

 Score = 53.0 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/207 (14%), Positives = 67/207 (32%), Gaps = 10/207 (4%)

Query: 161 ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN 220
           E  +  +       G   F+ + + C + C FC V    G   S   ++    A  + + 
Sbjct: 66  EEAACPNLPECFGSGTATFMIMGDICTRRCPFCDV--AHGRPNSLDPAEPRHLAETVANL 123

Query: 221 GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKA 280
            +  + +   +    R    DG    F D +  + +     R+       R   D  +  
Sbjct: 124 NLSYVVITSVD----RDDLKDGGAQHFVDCIQEIRKCCPNTRIEILVPDFRGRLDLALSI 179

Query: 281 HGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFP 340
                   P +         R+ +++           ++ + +++ P+I      +VG  
Sbjct: 180 LSQSP---PDVFNHNIETVPRLYRALRPGSDYQHSLNLLKKFKTLCPEIPTKCGLMVGI- 235

Query: 341 GETDDDFRATMDLVDKIGYAQAFSFKY 367
           GE + +  A ++ +           +Y
Sbjct: 236 GEIEAEVIALLNDLKDHYVDLVTIGQY 262


>gi|256810799|ref|YP_003128168.1| Radical SAM domain protein [Methanocaldococcus fervens AG86]
 gi|256793999|gb|ACV24668.1| Radical SAM domain protein [Methanocaldococcus fervens AG86]
          Length = 438

 Score = 53.0 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 51/277 (18%), Positives = 97/277 (35%), Gaps = 26/277 (9%)

Query: 91  KNSRIKEGGDLLVVVAGCVAQAEG-------EEILRRSPIVNVVVGPQTYYRLPELLERA 143
           K+ +      + V    CV +            I+       V++         E +   
Sbjct: 72  KDLKPHNPNAVFVAGGPCVMENFYPITDFFDAVIVGEIENSEVMLKVINKEFDVEGVYSK 131

Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLT-IQEGCDKFCTFCVVPYTRGIE 202
              K  V   Y  +   E   I            AFL  I  GC + C FC+        
Sbjct: 132 HAKKDKVKRIYPKKLGVEDYPIYQPSSEEGAYGKAFLLEIGRGCPRRCRFCLARAIYYPP 191

Query: 203 ISRSLSQVVDEARKLID-NGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
             R L+ ++  A + I  N V ++ L+  +V  ++            +L   L E    V
Sbjct: 192 RFRKLNDLMYLAEEGIKVNKVNKVALIAPSVGDYKY---------IVELCNFLDE--KGV 240

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
           ++  ++     ++D L++           L +  ++GS+R+ + + +     +    I+ 
Sbjct: 241 QISPSSLRADTLNDDLMRILKP-----KTLTIAPEAGSERLREFIKKDINEGDIFNAIEL 295

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
            +    +  +   F+VG P ETD+D    + L  KI 
Sbjct: 296 AKKYNVE-KVKLYFMVGIPTETDEDIEELITLTKKIK 331


>gi|251795235|ref|YP_003009966.1| lipoyl synthase [Paenibacillus sp. JDR-2]
 gi|247542861|gb|ACS99879.1| lipoic acid synthetase [Paenibacillus sp. JDR-2]
          Length = 300

 Score = 53.0 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/206 (16%), Positives = 74/206 (35%), Gaps = 14/206 (6%)

Query: 152 TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVV 211
           T ++V ++    +I +   NR      F+ + + C + C FC V      E+   L +  
Sbjct: 35  TLHTVCEEARCPNIYECWANRT---ATFMILGDICTRACRFCAVKTGLPTEL--DLQEPQ 89

Query: 212 DEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPR 271
             A      G+    +        R    DG    F+  + ++ E     R+        
Sbjct: 90  RVAEAAEQMGLRHCVVTSV----ARDDLADGGASIFAGTIKAIRERMPFTRVEVLIPDFM 145

Query: 272 DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAI 331
              + L         ++ +    V+  S+R+      ++      +++ R + + P I  
Sbjct: 146 GNEESLKIVMDAKPDILNHNIETVERMSNRV--RAKAKYRRS--LELLRRAKEMNPKIPT 201

Query: 332 SSDFIVGFPGETDDDFRATMDLVDKI 357
            S  ++G  GET ++    MD +  +
Sbjct: 202 KSSIMLGV-GETYEEVLQAMDDLRAV 226


>gi|261343905|ref|ZP_05971550.1| radical SAM protein [Providencia rustigianii DSM 4541]
 gi|282568291|gb|EFB73826.1| radical SAM protein [Providencia rustigianii DSM 4541]
          Length = 300

 Score = 53.0 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 45/121 (37%), Gaps = 12/121 (9%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +L L +Q+  D+ L  +NR H    Y+Q   + R++   + + +  I G PGE       
Sbjct: 141 WLELGLQTAHDKTLHRINRGHGFEAYQQTTQKARAL--GLKVCTHLICGLPGEDAAMNMQ 198

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDAC 409
           T++ V + G             G+  +          K+ R   LQ    ++        
Sbjct: 199 TLERVLECGTDGIKLHPLHIVEGSVMA----------KSWRAGRLQTISLDEYTHIAGEM 248

Query: 410 V 410
           +
Sbjct: 249 I 249


>gi|225076189|ref|ZP_03719388.1| hypothetical protein NEIFLAOT_01224 [Neisseria flavescens
           NRL30031/H210]
 gi|224952532|gb|EEG33741.1| hypothetical protein NEIFLAOT_01224 [Neisseria flavescens
           NRL30031/H210]
          Length = 606

 Score = 53.0 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 33/202 (16%), Positives = 72/202 (35%), Gaps = 14/202 (6%)

Query: 186 CDKFCTFC-VVPYTRGIEIS-----RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
           C   C FC           S     + + ++  E+      G       G       G  
Sbjct: 62  CANHCVFCGFYRNAWKDSQSSVYTDKIIEEMAAESEVRTGKGKIRAVYFG------GGTP 115

Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
                     L+ +  +   L      T   R     L KA   ++     + + VQ+ +
Sbjct: 116 TALLTEDLVRLIRACYQYLPLAEDCEFTIEGRMSHFDLEKAKACIEAGANRISIGVQTFN 175

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
             I + + R+H+  E  + + ++  +  D  I +D + G P +TDD ++  +    ++  
Sbjct: 176 TAIRRRLGRKHSGDEAFEYLAKLCEL--DAVIVADLMFGLPNQTDDVWQNDIARAAELPL 233

Query: 360 AQAFSFKYSPRLGTPGSNMLEQ 381
           +   ++ ++     P + M+E+
Sbjct: 234 SGLDTYAFNLYPMLPINRMIEK 255


>gi|23099426|ref|NP_692892.1| coproporphyrinogen III oxidase [Oceanobacillus iheyensis HTE831]
 gi|22777655|dbj|BAC13927.1| coproporphyrinogen oxidase III (oxygen-independent) [Oceanobacillus
           iheyensis HTE831]
          Length = 391

 Score = 53.0 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/236 (14%), Positives = 80/236 (33%), Gaps = 26/236 (11%)

Query: 186 CDKFCTFCV-VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK 244
           C + C +C  V Y            + ++A   I+  + EI       N        G  
Sbjct: 14  CKQICHYCNFVKYFY----------MENKADDYIEALIHEIDCTVIGYNVHVDTIYMGGG 63

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL-------MPYLHLPVQS 297
              +  +  L ++   +  ++     ++ +  +     D +         +  +   VQ 
Sbjct: 64  TPTALNIQQLKKLFNFLGRKFNLESCKEFTIEINPGDIDHEKAQLLSSYGVNRVSFGVQV 123

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA-ISSDFIVGFPGETDDDFRATMDLVDK 356
             D +L+ + R H   +  + +D +     D   IS D I   P +T + F  T+    +
Sbjct: 124 MDDDMLRKIGRMHCVKDVYETVDLLTKN--DFRNISLDLIYALPNQTVEHFEKTLHDALQ 181

Query: 357 IGYAQAFSFKYSPRLGTPGSNMLEQ-----VDENVKAERLLCLQKKLREQQVSFND 407
            G     ++       T   +   +       E+ + E    LQ +++++ +   +
Sbjct: 182 FGLPHYSTYALQIEPKTVFFHKQNKGQLQRPPEDAEVEMYRILQHEMKKRGIRQYE 237


>gi|331090752|ref|ZP_08339599.1| oxygen-independent coproporphyrinogen III oxidase [Lachnospiraceae
           bacterium 2_1_46FAA]
 gi|330399860|gb|EGG79519.1| oxygen-independent coproporphyrinogen III oxidase [Lachnospiraceae
           bacterium 2_1_46FAA]
          Length = 374

 Score = 53.0 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/204 (17%), Positives = 70/204 (34%), Gaps = 18/204 (8%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEI-TLLGQNVNAWRGKGLDGEK 244
           C K C +C         +S    +  +     +   + EI ++              G  
Sbjct: 14  CVKKCAYC-------DFLSGPADE--ETMEYYVRALIREIESIESMKEMYRVVTVFVGGG 64

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY-------LHLPVQS 297
                    +  I   +R ++     R+++          + L  Y       +   +QS
Sbjct: 65  TPSVLGGEQIERIFAALREKFAMESVREVTIEANPGTVTREKLKAYRSAGINRISFGLQS 124

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
            ++  LK + R HT  E+ +     R    D  I+ D I   P +T + +++T+D + K+
Sbjct: 125 ANNGELKQLGRIHTYEEFLESYMLAREEGFD-NINIDLISAIPNQTVESWKSTVDRILKL 183

Query: 358 GYAQAFSFKYSPRLGTPGSNMLEQ 381
                 ++      GTP   M  +
Sbjct: 184 QPEHISAYSLIVEEGTPFEKMYGE 207


>gi|253998540|ref|YP_003050603.1| coproporphyrinogen III oxidase [Methylovorus sp. SIP3-4]
 gi|253985219|gb|ACT50076.1| oxygen-independent coproporphyrinogen III oxidase [Methylovorus sp.
           SIP3-4]
          Length = 464

 Score = 53.0 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 82/229 (35%), Gaps = 33/229 (14%)

Query: 172 RKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQN 231
           R   + A +     CD  C +C        + S        +A + ++  + E+ L+   
Sbjct: 48  RDISLYAHIPF---CDTLCYYCGCNMVATRDYS--------KAERYLEVLLQEMALVADT 96

Query: 232 VNAWR--GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM-----SDCLIKAHGDL 284
            +A R   +   G           L ++      R+  +   ++        L +AH D 
Sbjct: 97  ASADRLVRQMHWGGGTPTYLKPDDLVKLHQAFARRFRMADDAEIGCEMDPRELTRAHVDA 156

Query: 285 DVLMPY--LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGE 342
                +  L L VQ    ++ +++NR  +     Q+   IR    + +I+ D I+G P +
Sbjct: 157 LASCGFNRLSLGVQDLDTQVQEAINRIQSQDLIEQVYGWIRDAGIN-SINFDLIIGLPHQ 215

Query: 343 TDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERL 391
           T + F  T+D V  +   +   F Y              V    K +RL
Sbjct: 216 TPERFARTLDAVIAMAPDRLAVFNY------------AHVPWMKKHQRL 252


>gi|254430356|ref|ZP_05044059.1| SAM radical enzyme [Cyanobium sp. PCC 7001]
 gi|197624809|gb|EDY37368.1| SAM radical enzyme [Cyanobium sp. PCC 7001]
          Length = 521

 Score = 53.0 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 50/261 (19%), Positives = 94/261 (36%), Gaps = 27/261 (10%)

Query: 174 RGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVN 233
                 + +   C + C FC+  Y      + SL   +  A +        + LLG +V 
Sbjct: 196 WPSIHMVEVVRSCPELCRFCLASYLTLPFRTPSLDDGLIPAVEKGLTVTRRLGLLGASVT 255

Query: 234 AWRGKGLDGEKCTFSDLLYSLSEIK-GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLH 292
                        F+DLL  L + +    R+  ++     ++  L +           L 
Sbjct: 256 QH---------PQFADLLQWLDQDRFADTRVSVSSVRAATVTPELGRILA--RRGSKSLT 304

Query: 293 LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD--IAISSDFIVGFPGETDDDFRAT 350
           + ++SGS+R+ + +N++       +I    R  +      +    + G P E + D  AT
Sbjct: 305 IAIESGSERMRQLVNKKLATE---EIFAAARYAKEGGLTGLKLYGMAGLPTEEEADIEAT 361

Query: 351 MDLVDKIGYA------QAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVS 404
             L+ ++  A            + P+  TP         E  K  RL  L K+LR + V 
Sbjct: 362 ASLLLELKKATPGLRLSLGVSTFVPKAHTP-FQWQGVRPEAEK--RLKLLAKRLRPKGVE 418

Query: 405 FNDACVG-QIIEVLIEKHGKE 424
                 G  +I+ L+ +  + 
Sbjct: 419 LRPESYGWSVIQALLSRSDRR 439


>gi|160947506|ref|ZP_02094673.1| hypothetical protein PEPMIC_01440 [Parvimonas micra ATCC 33270]
 gi|158446640|gb|EDP23635.1| hypothetical protein PEPMIC_01440 [Parvimonas micra ATCC 33270]
          Length = 346

 Score = 53.0 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/185 (17%), Positives = 57/185 (30%), Gaps = 10/185 (5%)

Query: 185 GCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK 244
           GC   C FC                +     + I     +   +     A+ G    G  
Sbjct: 2   GCPHDCIFCNQRKITNFVDVLDEVDIRRNIEQYISYFKNKTIPIEI---AFYGGSFTGLD 58

Query: 245 CTFSDLLYSLSEI---KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
                    +++    KG V     ++ P  ++  ++      +  +  + L VQS +  
Sbjct: 59  KNLMISYLDIAKEYIDKGFVSSIRLSTRPDYINHEILDILKKYE--VKTIELGVQSITKS 116

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
            L   NR H      +    I+    DI +    +VG  G+T D    T   + KI    
Sbjct: 117 TLDLNNRGHDVECIYKSSTLIKKY--DIKLGLQMMVGLYGDTFDMVINTAFELCKIDPDF 174

Query: 362 AFSFK 366
              + 
Sbjct: 175 VRIYP 179


>gi|331270040|ref|YP_004396532.1| Radical SAM domain-containing protein [Clostridium botulinum
           BKT015925]
 gi|329126590|gb|AEB76535.1| Radical SAM domain protein [Clostridium botulinum BKT015925]
          Length = 623

 Score = 53.0 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 42/291 (14%), Positives = 101/291 (34%), Gaps = 30/291 (10%)

Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
           P+  +  +   + +  +++  +  ++L +  G     R          GC + C FC   
Sbjct: 221 PKYDDVPKKVTKAIINNFNEVEFPDKLIVPYGEIVHDRVTIETF---RGCTRGCRFCQAG 277

Query: 197 YTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
                   ++  +++++  +L+   G  E++L+   ++      + G   +  +      
Sbjct: 278 MIYRPVREKTKEKIMEQVDQLLKATGYEEVSLVS--LSICDYSDIQGLITSLIEKYK--- 332

Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
                V +   +         LIK    +      L    ++GS R+   +N+  T  + 
Sbjct: 333 --DKKVGVSLPSIRIDAFCVDLIKEIQKVRK--TGLTFAPEAGSQRMRDIINKGVTEADL 388

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDD---FRATMDLVDK----IGYAQA------ 362
              +           I   F++G   E D+D        + V +    I   +       
Sbjct: 389 MASVSNAFKSGWS-TIKLYFMIGLSYEKDEDVIGIAELGEKVVEEYYKIPKDERQKGLKV 447

Query: 363 --FSFKYSPRLGTPGSNMLEQVDENVKAE-RLLCLQKKLREQQVSFNDACV 410
              +  + P+  TP     +   E VK + +L+    K +  Q +++++ V
Sbjct: 448 TLSTSIFVPKPFTPFQWAPQDRMEVVKKKIQLIRNSVKSKRIQYNWHESLV 498


>gi|325294282|ref|YP_004280796.1| hypothetical protein Dester_0078 [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325064730|gb|ADY72737.1| Protein of unknown function DUF2344 [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 807

 Score = 53.0 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 85/224 (37%), Gaps = 16/224 (7%)

Query: 135 RLPELLERARFGKRVVD-TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC 193
           R  E +   +FGK  V    ++   +    +               + +  GC + C FC
Sbjct: 199 RKIEGIWVPKFGKYPVKKAVFTKIPEGFFPTSPPIPVVETSQDRITIEVSRGCLRGCRFC 258

Query: 194 VVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLY 252
              +       R+   +         N G  E +L   +V+         +   F+ L+ 
Sbjct: 259 QAGFIYRPYRERNEKLIETLLESTFKNTGYEEASLSSLSVS---------DHSRFNSLIP 309

Query: 253 SLSEI--KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
            + E+  K ++ L   +   +  +  L      +        L  ++GS+R+ +++N+  
Sbjct: 310 EVMEVCYKEMISLSLPSMRVKSFNPELASQLMQVKK--TGFTLAPEAGSERLRRAINKDL 367

Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           T  +  ++++ + S      +   F++G P E ++D  A +D++
Sbjct: 368 TNEDLFRVVEGLFSRGWG-RLKLYFMIGLPFEDEEDIDALIDML 410


>gi|271499695|ref|YP_003332720.1| lipoic acid synthetase [Dickeya dadantii Ech586]
 gi|270343250|gb|ACZ76015.1| lipoic acid synthetase [Dickeya dadantii Ech586]
          Length = 321

 Score = 53.0 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/183 (16%), Positives = 67/183 (36%), Gaps = 12/183 (6%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V    G  ++   ++    A+ + D G+  + +   +    R    DG   
Sbjct: 94  CTRRCPFCDV--AHGRPLTPDANEPEKLAQTIHDMGLRYVVITSVD----RDDLRDGGAQ 147

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAH-GDLDVLMPYLHLPVQSGSDRILK 304
            F+D + ++      +R+       R   D  +         +  +    V     R+ +
Sbjct: 148 HFADCISAIRRKNPTIRIETLVPDFRGRMDRALDILTATPPDVFNHNLENV----PRLYR 203

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
            +          +++++ ++  P I   S  +VG  GET+D+    M  + + G      
Sbjct: 204 QVRPGADYEWSLKLLEKFKASHPTIPTKSGLMVGL-GETNDEILDVMRDLRRHGVTMLTL 262

Query: 365 FKY 367
            +Y
Sbjct: 263 GQY 265


>gi|257068808|ref|YP_003155063.1| lipoyl synthase [Brachybacterium faecium DSM 4810]
 gi|256559626|gb|ACU85473.1| lipoate synthase [Brachybacterium faecium DSM 4810]
          Length = 340

 Score = 53.0 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 41/249 (16%), Positives = 86/249 (34%), Gaps = 23/249 (9%)

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQ-EGCDKFCTFCVVPYTRGIEISRSLSQVVD 212
           ++V ++    +I +   +R+    A   I  + C + C FC +    G  ++    +   
Sbjct: 52  HTVCEEAGCPNIFECWEDRE----ATFLIGGDTCTRRCDFCNI--ATGKPMAVDPMEPFK 105

Query: 213 EARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
            A+ + + G+   T+ G      R    DG    F+     +  +     +       + 
Sbjct: 106 VAQSVKEMGLRYSTITGV----ARDDLEDGAAGLFARTCEQIHAMNPGTGVELLIDDIKG 161

Query: 273 MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAIS 332
               L +       +  +    V     RI K +           +I   +     +   
Sbjct: 162 NGQHLKQVFEAKPEVFAHNLETV----PRIFKQIRPAFRYERSLDVISMGKDA--GMITK 215

Query: 333 SDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLL 392
           S+ I+G  GETDD+   +++ + + G       +Y  R     S +   +D  VK ++ +
Sbjct: 216 SNLILGM-GETDDEILESLERLHEAGCDIITITQYM-RP----SKLHHPIDRWVKPQQFV 269

Query: 393 CLQKKLREQ 401
            L     E 
Sbjct: 270 ALSHAAEEI 278


>gi|170727837|ref|YP_001761863.1| radical SAM domain-containing protein [Shewanella woodyi ATCC
           51908]
 gi|169813184|gb|ACA87768.1| Radical SAM domain protein [Shewanella woodyi ATCC 51908]
          Length = 646

 Score = 53.0 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 39/197 (19%), Positives = 68/197 (34%), Gaps = 23/197 (11%)

Query: 180 LTIQEGCDKF-CTFCVVPYTRGIEISRSLSQV-VDEARKLIDNGVCEITLLGQNVNAWRG 237
           LTI  GC    C+FC V          + + V VD   +LI+         G+    +  
Sbjct: 367 LTIAHGCYWRKCSFCDVSLDYIDRFDAAGADVLVDRIEQLIEE-------TGE--TGFHF 417

Query: 238 KGLDGEKCTFSDLLYSLSE----IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHL 293
                       L   L E    I     +R+     R  S    +   D   +      
Sbjct: 418 VDEALPPKLLFTLAKRLIERNVVISWWGNIRF----ERTFSQARCQLLADSGCIAVSG-- 471

Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
            ++  SDR+LK M +  +     Q+          I + +  + GFP +T+ +   ++++
Sbjct: 472 GLEVASDRLLKLMKKGVSVERVAQVTKSFSDA--GILVHAYLMYGFPTQTEQETVDSLEM 529

Query: 354 VDKIGYAQAFSFKYSPR 370
           V ++     F   Y  R
Sbjct: 530 VRQMMKQGCFQSAYWHR 546


>gi|326389867|ref|ZP_08211431.1| oxygen-independent coproporphyrinogen III oxidase
           [Thermoanaerobacter ethanolicus JW 200]
 gi|325994135|gb|EGD52563.1| oxygen-independent coproporphyrinogen III oxidase
           [Thermoanaerobacter ethanolicus JW 200]
          Length = 375

 Score = 53.0 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 33/211 (15%), Positives = 70/211 (33%), Gaps = 20/211 (9%)

Query: 186 CDKFCTFCVVPYTRGI--EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
           C + C +C      G        +  ++ E                 NV +    G    
Sbjct: 13  CKRKCYYCDFNSYAGYDYLFDDYIRALLMEIESNSTKDY--------NVVSVYIGGGTPN 64

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHG---DLDVLMPYLHLPVQSGSD 300
                 +   L  +    ++        +M+  LI         D  +  + + +Q+  +
Sbjct: 65  LLPPFYIEKILKSVFKNYKILDGCEITIEMNPGLITEEKLKIYKDNGINRVSIGLQAFQN 124

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
           R+LK + R HT  ++    + ++    +I I  D +   P +T  +++ T+  V K+   
Sbjct: 125 RLLKYIGRIHTIEDFFGNYELVKKFFDNINI--DLMYALPTQTFKEWQETLKEVVKLQPT 182

Query: 361 QAFSFKYSPRLGTPGSNMLEQ-----VDENV 386
              ++       T    + E+     VDE  
Sbjct: 183 HVSTYSLILEPNTSFYRLYEKGQLPIVDEEE 213


>gi|119898800|ref|YP_934013.1| hypothetical protein azo2509 [Azoarcus sp. BH72]
 gi|119671213|emb|CAL95126.1| conserved hypothetical protein [Azoarcus sp. BH72]
          Length = 641

 Score = 53.0 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 34/181 (18%), Positives = 67/181 (37%), Gaps = 17/181 (9%)

Query: 180 LTIQEGCDKF-CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK 238
           LT+  GC    C+FC +       ISR        A  L+D     I   GQ    +  +
Sbjct: 370 LTVAHGCYWKKCSFCDISL---DYISRYEG---AAASVLVDRIEAIIAETGQTGFHFVDE 423

Query: 239 GLDGE--KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQ 296
               +  +    +LL     I     +R+     +  +  L +   D   +   +   ++
Sbjct: 424 AAPPKALRALAEELLRRGVAISWWGNIRF----EKSFTPALCQLLADSGCIA--ISGGLE 477

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
             SDR+LK M +  +  +  ++          + + +  + GFP +T  D    ++ V +
Sbjct: 478 VASDRLLKLMKKGVSVDQVARVTHAFAEA--GVLVHAYLMYGFPTQTVHDTVDALEYVRQ 535

Query: 357 I 357
           +
Sbjct: 536 L 536


>gi|315654881|ref|ZP_07907786.1| coproporphyrinogen dehydrogenase [Mobiluncus curtisii ATCC 51333]
 gi|315490842|gb|EFU80462.1| coproporphyrinogen dehydrogenase [Mobiluncus curtisii ATCC 51333]
          Length = 469

 Score = 53.0 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 38/91 (41%), Gaps = 2/91 (2%)

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
           +   +QS    +L ++NR H        +    S    + +S D I G PGET  D+RA+
Sbjct: 156 VSFGMQSAVPAVLATLNRTHQQKHLVAGVQAAHSR--GLEVSVDLIYGTPGETLADWRAS 213

Query: 351 MDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           +D   ++G      +      GT     L Q
Sbjct: 214 LDAALELGVDHVSCYALVIEPGTALGRALAQ 244


>gi|260591268|ref|ZP_05856726.1| lipoyl synthase [Prevotella veroralis F0319]
 gi|260537133|gb|EEX19750.1| lipoyl synthase [Prevotella veroralis F0319]
          Length = 606

 Score = 53.0 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 37/248 (14%), Positives = 81/248 (32%), Gaps = 19/248 (7%)

Query: 126 VVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGG--YNRKRGVTA-FLTI 182
           ++ G + +   PE L+     K+       +  K    +I   G   NR     A   T+
Sbjct: 323 LLFGRKPHVMKPEWLKIDLTSKKSTGETAGILSKHHMNTICTSGLCPNRAECWMARTATL 382

Query: 183 QEG---CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
             G   C + C FC      G   +   ++    A  +   G+    +   +    R   
Sbjct: 383 MIGGDICTRKCRFCNT--LSGRPRALDSNEPTRVAESIKALGLRYAVITSVD----RDDL 436

Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
            D     +   +  +  +    ++          ++ + +       +  +    V+  +
Sbjct: 437 DDYGAAHWVQTIKEIQRLNPETKVELLIPDFMGKAELIRQVMATKPHVAGHNMETVRRLT 496

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
             +      R+      +++  I      I   + F++G  GET ++   TMD + K G 
Sbjct: 497 PSV--RSVARYDRS--LEVLHEITKC--GITAKTGFMLGL-GETHEEILETMDDILKTGC 549

Query: 360 AQAFSFKY 367
            +    +Y
Sbjct: 550 KRLTLGQY 557


>gi|296127655|ref|YP_003634907.1| Radical SAM domain protein [Brachyspira murdochii DSM 12563]
 gi|296019471|gb|ADG72708.1| Radical SAM domain protein [Brachyspira murdochii DSM 12563]
          Length = 374

 Score = 53.0 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/205 (14%), Positives = 62/205 (30%), Gaps = 25/205 (12%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGI-EISR-SLSQVVDEARKLIDNGVCEITLLGQNVNAWRG 237
           +     C   C +C +  +    E  R +   ++       + G     L G       G
Sbjct: 80  IEFTNYCKNDCIYCGIRKSNKNAERYRLNKEDILSCCELGYEIGFRTFVLQG-------G 132

Query: 238 KGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY-----LH 292
           +         SD++ ++        L  +     +    ++K  G    L+ +      H
Sbjct: 133 EDPYYNISIMSDIVDAIKTKFPDCALTLSIGEKEEEYYRVLKEKGADRFLLRHETSDNTH 192

Query: 293 LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352
                  D  L      +   E  + + ++          +  +VG P +T ++    + 
Sbjct: 193 YSKLHPIDMSL------YNRKECLRSLKKL-----GFQTGTGIMVGSPYQTLENIACDLV 241

Query: 353 LVDKIGYAQAFSFKYSPRLGTPGSN 377
            + +I         + P   TP SN
Sbjct: 242 FMQEIKPEMIGIGPFLPHKDTPFSN 266


>gi|212635748|ref|YP_002312273.1| Radical SAM [Shewanella piezotolerans WP3]
 gi|212557232|gb|ACJ29686.1| Radical SAM [Shewanella piezotolerans WP3]
          Length = 644

 Score = 53.0 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 42/247 (17%), Positives = 77/247 (31%), Gaps = 23/247 (9%)

Query: 130 PQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKF 189
                   + + +   G  V D     +       +         G    LTI  GC   
Sbjct: 317 HFNENDQLQDIPQTEVGAPVYDGLPLEDYLSLCEMLNPMHRIWSDGRWNKLTIAHGCYWR 376

Query: 190 -CTFCVVPYTR-GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTF 247
            C+FC V         + S   +VD   +LI+         G+    +            
Sbjct: 377 KCSFCDVSLDYIDRFDAASADVLVDRIEQLIEE-------TGE--TGFHFVDEALPPKLL 427

Query: 248 SDLLYSLSE----IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
                 L E    I     +R+     R  S+   +   D   +       ++  SDR+L
Sbjct: 428 FTFAKRLIERGVVISWWGNIRF----ERTFSEARCQLLADSGCIAVSG--GLEVASDRLL 481

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           K M +  +     Q+          I + +  + GFP +T+ +   ++++V ++     F
Sbjct: 482 KLMKKGVSVERVAQVTKAFSDA--GILVHAYLMYGFPTQTEQETVDSLEMVRQMMQQGCF 539

Query: 364 SFKYSPR 370
              Y  R
Sbjct: 540 QSAYWHR 546


>gi|167750752|ref|ZP_02422879.1| hypothetical protein EUBSIR_01730 [Eubacterium siraeum DSM 15702]
 gi|167656187|gb|EDS00317.1| hypothetical protein EUBSIR_01730 [Eubacterium siraeum DSM 15702]
          Length = 364

 Score = 53.0 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/209 (16%), Positives = 73/209 (34%), Gaps = 23/209 (11%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEIT-LLGQNVNAWRGKGLDGEK 244
           C   C +C          S +     D A +  D  +  +   L Q+ N  R   +    
Sbjct: 12  CLSKCPYC-------DFYSVAFDS--DTANRYKDAVIRNLRCYLSQDEN-LRFDTVYFGG 61

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLM-------PYLHLPVQS 297
            T   L   + +I  +  ++   +   +++        D + L          +   +QS
Sbjct: 62  GTPILLWREICDI--MDEIQPYIASDAEITVEANPCCTDENALCSLKTHNVNRISFGLQS 119

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI-AISSDFIVGFPGETDDDFRATMDLVDK 356
           G+D  LK++ R+H +      +    + +     IS D ++G P +T D    T+  +  
Sbjct: 120 GNDNELKALGRKHNSKVGADAVKM--AYKAGFYNISGDIMLGIPLQTSDSLIETISYMTS 177

Query: 357 IGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
           +  +   ++       TP S     + + 
Sbjct: 178 LPLSHISAYMLKIEPDTPFSKRHLILPDE 206


>gi|89074470|ref|ZP_01160947.1| coproporphyrinogen III oxidase [Photobacterium sp. SKA34]
 gi|89049758|gb|EAR55308.1| coproporphyrinogen III oxidase [Photobacterium sp. SKA34]
          Length = 457

 Score = 53.0 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 43/237 (18%), Positives = 84/237 (35%), Gaps = 23/237 (9%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C K C +C           +     +D+  + I       TLLG    +    G  G   
Sbjct: 62  CHKLCYYCGCNKIITRHQHK-ADDYLDKLEQEIKQ---RATLLGDRQVSQLHWG--GGTP 115

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL-------MPYLHLPVQSG 298
           TF      +S +   +R  +      ++S  +     +LD+L          L + VQ  
Sbjct: 116 TF-LTAAQISRLMNSLRAVFNFDDDAEISIEVDPREIELDILDHLRSEGFNRLSIGVQDF 174

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS-DFIVGFPGETDDDFRATMDLVDKI 357
           +  + K +NR         +++R R +      ++ D I G P +  + F  T++ V ++
Sbjct: 175 NKDVQKLVNREQDEVFIFAMVERAREL--GFRSTNLDLIYGLPLQNREMFAKTLEQVLEM 232

Query: 358 GYAQAFSFKYSPRLGTPGSNMLEQVDENV---KAERLLCLQKKLREQQVSFNDACVG 411
              +   F Y+       +    ++ E +     E+L  LQ  +     +     +G
Sbjct: 233 NPGRLSVFNYAHMPKLFAAQR--KISEALLPSAKEKLGILQNTIATLTGAGYQ-FIG 286


>gi|16125979|ref|NP_420543.1| lipoyl synthase [Caulobacter crescentus CB15]
 gi|221234746|ref|YP_002517182.1| lipoyl synthase [Caulobacter crescentus NA1000]
 gi|22001786|sp|Q9A7I8|LIPA_CAUCR RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|254809181|sp|B8GW82|LIPA_CAUCN RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|13423153|gb|AAK23711.1| lipoic acid synthase [Caulobacter crescentus CB15]
 gi|220963918|gb|ACL95274.1| lipoic acid synthetase [Caulobacter crescentus NA1000]
          Length = 325

 Score = 53.0 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 75/220 (34%), Gaps = 11/220 (5%)

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
           + +  ++ +    E  +  + G    +     + + E C + C FC V  T G+      
Sbjct: 52  KGIVREHKLHTVCEEAACPNIGECWSQKHATMMIMGEICTRACAFCNV--TTGLPTQLDP 109

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
            +    A  +   G+  + +   +    R   LDG    F++++ S+        +   T
Sbjct: 110 DEPRRVAEAVAKMGLKHVVITSVD----RDDLLDGGARHFAEVVTSIRAAAPGTTIEILT 165

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
                              +  +    +++     LK +      Y   +++DR++   P
Sbjct: 166 PDFLRKDGAENVVIDSKPDVFNH---NLETVPRLYLK-IRPGARYYNSLRLLDRVKQRDP 221

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
                S  +VG  GET ++    MD +   G       +Y
Sbjct: 222 SQFTKSGLMVGL-GETKEEVMQVMDDMRSAGVDFITIGQY 260


>gi|237756637|ref|ZP_04585149.1| oxygen-independent coproporphyrinogen III oxidase
           [Sulfurihydrogenibium yellowstonense SS-5]
 gi|237691202|gb|EEP60298.1| oxygen-independent coproporphyrinogen III oxidase
           [Sulfurihydrogenibium yellowstonense SS-5]
          Length = 462

 Score = 53.0 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 45/257 (17%), Positives = 89/257 (34%), Gaps = 19/257 (7%)

Query: 158 DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKL 217
           DK E +  +     RK  ++ +  I   C+  C FC       + I+R    V      L
Sbjct: 39  DKAEYVKKIIQSNERKTPLSLYFHIPF-CENACHFC----GCNVIITRRKEVVKPYLDHL 93

Query: 218 IDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCL 277
                   TL+  N N    +   G             E+   ++ R+      ++S  +
Sbjct: 94  YKEMDLYKTLIDVN-NRNVVQLHWGGGTPNYLSDEETVELFDEIKKRFQIDEKAEISIEI 152

Query: 278 IKAHGDLDVLM-------PYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330
              H D D +              +Q  + ++ +++NR         ++   R    + +
Sbjct: 153 DPRHVDRDRIFLLRKVGFNRASFGIQDFNPKVQEAVNRIQPEEMIFNVMKWFREAGFE-S 211

Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV---K 387
           ++ D I G P +T + F  T+D   K+   +   F ++         +   +DE      
Sbjct: 212 VNIDLIYGLPYQTLETFSDTIDKTIKLNPDRIAVFNFAYVPWLK--RLQRNIDEKTLPPP 269

Query: 388 AERLLCLQKKLREQQVS 404
            E+L  LQ  + +   +
Sbjct: 270 EEKLKILQMTIEKLTKA 286


>gi|221633414|ref|YP_002522639.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Thermomicrobium roseum DSM 5159]
 gi|221156673|gb|ACM05800.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Thermomicrobium roseum DSM 5159]
          Length = 404

 Score = 53.0 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 46/255 (18%), Positives = 82/255 (32%), Gaps = 30/255 (11%)

Query: 169 GYNRKRGVTAFLTIQEGCDKFCTFC----------VVPYTRGIEISRSLSQVVDEARKLI 218
              R+     ++ I   C + C +C          ++P            ++   A +  
Sbjct: 15  PQPREAPWGLYVHIPF-CRRVCPYCDFNVYARQEPLIPRYLAAVR----RELALLADRWG 69

Query: 219 DNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLI 278
              V  I L G       G          ++LL +++ I  LV     T      +    
Sbjct: 70  RGPVRTIYLGG-------GTPSLLTPHQVAELLDAIAAIFVLVDQPEVTLEANPETVDTE 122

Query: 279 KAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS-DFIV 337
           K  G     +  L L VQ+   + LK + R H            R+        + D I 
Sbjct: 123 KLAGYRAAGVNRLSLGVQTLVPQGLKVLGRAHRPETPVAAYRAARAT--GFRNVNLDLIY 180

Query: 338 GFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN-----MLEQVDENVKAERLL 392
           G+PG+T D +   +  V          +  +   GTP        +L  +D++V AE   
Sbjct: 181 GWPGQTRDQWEQDLATVLSWQPEHLSLYALTIEPGTPYERAVRRGILRPLDDDVVAELAE 240

Query: 393 CLQKKLREQQVSFND 407
              ++L +      +
Sbjct: 241 LAMEQLEKHGYLHYE 255


>gi|210633017|ref|ZP_03297617.1| hypothetical protein COLSTE_01525 [Collinsella stercoris DSM 13279]
 gi|210159304|gb|EEA90275.1| hypothetical protein COLSTE_01525 [Collinsella stercoris DSM 13279]
          Length = 625

 Score = 53.0 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 44/242 (18%), Positives = 81/242 (33%), Gaps = 27/242 (11%)

Query: 179 FLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRG 237
            + +  GC + C FC    T      RS  QVV      + + G  E++L   +      
Sbjct: 267 CVEVLRGCARGCRFCQAGMTYRPVRERSADQVVSAVTSGLASMGYDEVSLNSLSST---- 322

Query: 238 KGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQS 297
                +    +++L  L+   G   +       R  S  +  A          L    ++
Sbjct: 323 -----DHSKCAEILNRLNRRLGDTGIAINVPSQRLDSFGVDMAAAVAGEKKGGLTFAPEA 377

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDF-------RAT 350
           GS R+   +N+  T  +  + I           +   F++G PGETD+D          T
Sbjct: 378 GSQRLRDVINKNVTEEDLERAIRAAFEQGWR-RVKLYFMMGLPGETDEDIVAIANLADHT 436

Query: 351 MDLVDKIGY--------AQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQ 402
           +++  ++                 + P+  TP      Q  ++    R   L   +R + 
Sbjct: 437 LEVAREVVPKEQRGGISVSVSVSVFIPKAQTP-FQWCGQTPKDEVKRRQQLLLHSVRNRA 495

Query: 403 VS 404
           V 
Sbjct: 496 VR 497


>gi|117625503|ref|YP_858826.1| putative Fe-S oxidoreductase [Escherichia coli APEC O1]
 gi|170683121|ref|YP_001745483.1| radical SAM family protein [Escherichia coli SMS-3-5]
 gi|215488527|ref|YP_002330958.1| predicted Fe-S oxidoreductase [Escherichia coli O127:H6 str.
           E2348/69]
 gi|218560281|ref|YP_002393194.1| Fe-S oxidoreductase [Escherichia coli S88]
 gi|237706037|ref|ZP_04536518.1| radical SAM protein [Escherichia sp. 3_2_53FAA]
 gi|306816447|ref|ZP_07450579.1| putative Fe-S oxidoreductase [Escherichia coli NC101]
 gi|312968450|ref|ZP_07782659.1| radical SAM superfamily protein [Escherichia coli 2362-75]
 gi|115514627|gb|ABJ02702.1| putative Fe-S oxidoreductase [Escherichia coli APEC O1]
 gi|170520839|gb|ACB19017.1| radical SAM protein, TIGR01212 family [Escherichia coli SMS-3-5]
 gi|215266599|emb|CAS11038.1| predicted Fe-S oxidoreductase [Escherichia coli O127:H6 str.
           E2348/69]
 gi|218367050|emb|CAR04821.1| putative Fe-S oxidoreductase [Escherichia coli S88]
 gi|222034928|emb|CAP77671.1| Uncharacterized protein yhcC [Escherichia coli LF82]
 gi|226899077|gb|EEH85336.1| radical SAM protein [Escherichia sp. 3_2_53FAA]
 gi|281180253|dbj|BAI56583.1| conserved hypothetical protein [Escherichia coli SE15]
 gi|294491155|gb|ADE89911.1| radical SAM protein, TIGR01212 family [Escherichia coli IHE3034]
 gi|305850012|gb|EFM50471.1| putative Fe-S oxidoreductase [Escherichia coli NC101]
 gi|307625190|gb|ADN69494.1| putative Fe-S oxidoreductase [Escherichia coli UM146]
 gi|312286668|gb|EFR14579.1| radical SAM superfamily protein [Escherichia coli 2362-75]
 gi|312947768|gb|ADR28595.1| putative Fe-S oxidoreductase [Escherichia coli O83:H1 str. NRG
           857C]
 gi|315288990|gb|EFU48388.1| radical SAM protein family [Escherichia coli MS 110-3]
 gi|323189168|gb|EFZ74452.1| radical SAM superfamily protein [Escherichia coli RN587/1]
 gi|324008723|gb|EGB77942.1| radical SAM protein, TIGR01212 family [Escherichia coli MS 57-2]
 gi|330909263|gb|EGH37777.1| putative Fe-S oxidoreductase [Escherichia coli AA86]
          Length = 309

 Score = 53.0 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 43/237 (18%), Positives = 75/237 (31%), Gaps = 36/237 (15%)

Query: 181 TIQEGCDKFCTFCVV-PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
           TI  G    CTFC V  +    +  RS+++ +     L++     +              
Sbjct: 39  TIGRG---GCTFCNVASFADEAQQHRSIAEQLAHQANLVNRAKRYLAYF-----QAYTST 90

Query: 240 LDGEKCTFSDLLYSLSE--IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQS 297
               +   S    ++S+  I GL  +        D    L+  + D    + +L L +Q+
Sbjct: 91  FAEVQVLRSMYQQAVSQANIVGLC-VGTRPDCVPDAVLDLLCEYKDQGYEV-WLELGLQT 148

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
             D+ L  +NR H    Y++     R     + + S  IVG PGE   +   T++ V + 
Sbjct: 149 AHDKTLHRINRGHDFACYQRTTQLARER--GLKVCSHLIVGLPGEGQAECLQTLERVVET 206

Query: 358 GYAQAFSFKYSPRLG---------------------TPGSNMLEQVDENVKAERLLC 393
           G             G                          M+      V   R+  
Sbjct: 207 GVDGIKLHPLHIVKGSIMAKAWEAGRLNGIELEDYTLTAGEMIRHTPPEVIYHRISA 263


>gi|26249797|ref|NP_755837.1| hypothetical protein c3971 [Escherichia coli CFT073]
 gi|26110225|gb|AAN82411.1|AE016767_171 Hypothetical protein yhcC [Escherichia coli CFT073]
          Length = 288

 Score = 53.0 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 43/237 (18%), Positives = 75/237 (31%), Gaps = 36/237 (15%)

Query: 181 TIQEGCDKFCTFCVV-PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
           TI  G    CTFC V  +    +  RS+++ +     L++     +              
Sbjct: 18  TIGRG---GCTFCNVASFADEAQQHRSIAEQLAHQANLVNRAKRYLAYF-----QAYTST 69

Query: 240 LDGEKCTFSDLLYSLSE--IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQS 297
               +   S    ++S+  I GL  +        D    L+  + D    + +L L +Q+
Sbjct: 70  FAEVQVLRSMYQQAVSQANIVGLC-VGTRPDCVPDAVLDLLCEYKDQGYEV-WLELGLQT 127

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
             D+ L  +NR H    Y++     R     + + S  IVG PGE   +   T++ V + 
Sbjct: 128 AHDKTLHRINRGHDFACYQRTTQLARER--GLKVCSHLIVGLPGEGQAECLQTLERVVET 185

Query: 358 GYAQAFSFKYSPRLG---------------------TPGSNMLEQVDENVKAERLLC 393
           G             G                          M+      V   R+  
Sbjct: 186 GVDGIKLHPLHIVKGSIMAKAWEAGRLNGIELEDYTLTAGEMIRHTPPEVIYHRISA 242


>gi|318604753|emb|CBY26251.1| lipoate synthase [Yersinia enterocolitica subsp. palearctica Y11]
          Length = 321

 Score = 53.0 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 43/257 (16%), Positives = 85/257 (33%), Gaps = 17/257 (6%)

Query: 118 LRRSPIVNVVVGPQTYYRLPELLERAR-------FGKRVVDTDYSVEDKFERLSIVDGGY 170
           +   PI  VV   Q   R PE ++           G +       +    E  S  +   
Sbjct: 19  MALIPIKTVVTERQELLRKPEWMKIKLPADSSRIQGIKAAMRKNGLHSVCEEASCPNLSE 78

Query: 171 NRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQ 230
               G   F+ +   C + C FC V    G  ++   ++    A+ + D  +  + +   
Sbjct: 79  CFNHGTATFMILGAICTRRCPFCDV--AHGRPVTPDANEPEKLAQTIKDMALHYVVITSV 136

Query: 231 NVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY 290
           +    R    DG    F+D + ++      +++       R   D  +          P 
Sbjct: 137 D----RDDLRDGGAQHFADCISAIRAKNPTIKIETLVPDFRGRMDRALDILTVTP---PD 189

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
           +         R+ + +          ++++R +   PDI   S  +VG  GET+ +    
Sbjct: 190 VFNHNLENVPRVYRQVRPGANYEWSLKLLERFKEAHPDIPTKSGLMVGL-GETNAEIVEV 248

Query: 351 MDLVDKIGYAQAFSFKY 367
           M  + + G       +Y
Sbjct: 249 MRDLRRHGVTMLTLGQY 265


>gi|303229369|ref|ZP_07316159.1| coproporphyrinogen dehydrogenase HemZ [Veillonella atypica
           ACS-134-V-Col7a]
 gi|302515905|gb|EFL57857.1| coproporphyrinogen dehydrogenase HemZ [Veillonella atypica
           ACS-134-V-Col7a]
          Length = 459

 Score = 53.0 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 73/224 (32%), Gaps = 15/224 (6%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEAR--KLIDNGVCEITLLGQNVNAWRGKGLDGE 243
           C+  C +C  PY    E  R    +         +        L   + N     G    
Sbjct: 146 CETRCVYCSFPYGLYQEYHRQSEFIAALLEDIDDVRQICESYNL---HTNTLYMGGGTPT 202

Query: 244 KCTFSDLLYSLSE----IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
                D    L+     I            P  ++   I++       +  + +  Q+  
Sbjct: 203 ILNNEDFHRVLTGLSTLIPKGHEFTVEAGRPDSITTEKIQSMQACH--VNRISINPQTMD 260

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
           D IL+ + R H+A +   +   ++    + A++ DFI G PG+        MD +     
Sbjct: 261 DTILRRIGRGHSAQDIDDMYQYVKKHT-NFAVNMDFIAGLPGQNIKHMIHNMDYICHNLP 319

Query: 360 AQAFSFKYSPRLGTPGS--NMLEQVDEN-VKAERLLCLQKKLRE 400
                   + + G+P    NM   V +  +    +   Q++L +
Sbjct: 320 ENVTIHTLAIKRGSPLYDLNMQHDVPDESIVKHMVQYAQERLEQ 363


>gi|302333424|gb|ADL23617.1| putative Fe-S oxidoreductase [Staphylococcus aureus subsp. aureus
           JKD6159]
          Length = 317

 Score = 53.0 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 37/202 (18%), Positives = 69/202 (34%), Gaps = 19/202 (9%)

Query: 188 KFCTFCVVPYT------RGIEISRSLSQVVDEARKLIDNGVCEITLLG-QNVNAWRGKGL 240
             CTFC    +      R   I+    ++ ++  +    G          N +A      
Sbjct: 50  GGCTFCSAAGSGDFAGNRADSIAVQFKEIKEKMHEKWHEGKYIAYFQAFTNTHAPV---- 105

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLD-VLMPYLHLPVQSGS 299
                   +    + +  G+V L   T  P  + D +++   DL+     ++ L +Q+  
Sbjct: 106 ----AVLKEKFEPVLKEPGVVGLSIGT-RPDCLPDDVVEYLADLNQRTYLWVELGLQTIH 160

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
                 +NR H    Y   + ++R    +I + +  I G PGE  D   AT   V ++  
Sbjct: 161 QSTSDLINRAHDMKTYYDGVAKLRK--HNINVCTHIINGLPGEDYDMMMATAKEVAQMDV 218

Query: 360 AQAFSFKYSPRLGTPGSNMLEQ 381
                       GTP     ++
Sbjct: 219 QGIKIHLLHLLKGTPMVKQYDK 240


>gi|289551259|ref|YP_003472163.1| Lipoate synthase [Staphylococcus lugdunensis HKU09-01]
 gi|315658761|ref|ZP_07911630.1| lipoyl synthase [Staphylococcus lugdunensis M23590]
 gi|289180791|gb|ADC88036.1| Lipoate synthase [Staphylococcus lugdunensis HKU09-01]
 gi|315496216|gb|EFU84542.1| lipoyl synthase [Staphylococcus lugdunensis M23590]
          Length = 307

 Score = 53.0 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 40/256 (15%), Positives = 88/256 (34%), Gaps = 20/256 (7%)

Query: 112 AEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYN 171
              EEILR+   + + +     Y   + + R +         ++V ++ +  +I +    
Sbjct: 3   TRNEEILRKPDWLKIKLNTNENYTGLKKMMREKN-------LHTVCEEAKCPNIHECWGA 55

Query: 172 RKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQN 231
           R+     F+ +   C + C FC V      E+   L++    A  +    +  + +    
Sbjct: 56  RR--TATFMILGAVCTRACRFCAVKTGLPNEL--DLNEPERVAESVELMNLKHVVITAV- 110

Query: 232 VNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL 291
               R    D     +++ +  + E      +    S      + L         ++ + 
Sbjct: 111 ---ARDDLRDAGSNVYAETVRKVRERNPFTTIEILPSDMGGDYEALETLMASRPDILNHN 167

Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351
              V+  +      +  R T     + + R + ++PDI   S  +VG  GET ++    M
Sbjct: 168 IETVRRLTP----RVRARATYDRTLEFLRRSKELQPDIPTKSSIMVGL-GETTEELLQAM 222

Query: 352 DLVDKIGYAQAFSFKY 367
           D +           +Y
Sbjct: 223 DDLRANDVDILTIGQY 238


>gi|83858335|ref|ZP_00951857.1| lipoyl synthase [Oceanicaulis alexandrii HTCC2633]
 gi|83853158|gb|EAP91010.1| lipoyl synthase [Oceanicaulis alexandrii HTCC2633]
          Length = 326

 Score = 53.0 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/211 (14%), Positives = 64/211 (30%), Gaps = 13/211 (6%)

Query: 179 FLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK 238
           F+ + E C + C+FC V       +     +    A      G+  + +   +    R  
Sbjct: 82  FMIMGETCTRACSFCNVKTGLPDAL--DADEPRRVAEATATMGLKHVVITSVD----RDD 135

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
             DG    F+ ++ ++ E      +   T                   +  +        
Sbjct: 136 LSDGGAEHFAQVIRAIREAAPGTTIEILTPDFLRKPGAAEVVIDAKPDVFNHNL-----E 190

Query: 299 SDRILKSMNRRHTAYEY-RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
           +   L    R    Y +  ++++R++   P     S  +VG  GET ++    MD +   
Sbjct: 191 TVPRLYLSIRPGARYYHSLRLLERVKERDPSQFTKSGIMVGL-GETKEEVMQVMDDMRSA 249

Query: 358 GYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
                   +Y        +       E  K+
Sbjct: 250 SIDFLTIGQYLQPTRKHAAVDRYVTPEEFKS 280


>gi|170289332|ref|YP_001739570.1| radical SAM domain-containing protein [Thermotoga sp. RQ2]
 gi|170176835|gb|ACB09887.1| Radical SAM domain protein [Thermotoga sp. RQ2]
          Length = 348

 Score = 53.0 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 42/253 (16%), Positives = 88/253 (34%), Gaps = 25/253 (9%)

Query: 134 YRLPELLERARFGKRVVDTDYSVEDK-FERLSIVDGGYNRKR------GVTAFLTIQEGC 186
           + + E LER  F + V+    S  DK F           RK+       + A +     C
Sbjct: 4   HEILERLERREFTREVLKEALSRNDKEFNDALFKLADEVRKKYVGDEVHIRAIIEFSNVC 63

Query: 187 DKFCTFCVVPYTRGIEISR--SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK 244
            K C +C +            +  ++++ A+  +  G   I L         G+      
Sbjct: 64  RKNCLYCGLRRDNKNLKRYRMTPEEIIERAKLAVQFGAKTIVLQS-------GEDPYYMP 116

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304
              SD++  + ++ G+         PR+  +   +A  D         L  ++ +  + +
Sbjct: 117 DVISDIVREIKKM-GVAVTLSLGEWPREFYEKWKEAGADR------YLLRHETANPALHR 169

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
            +    +     + +  ++ +       +  +VG PG+T DD    +  + K  +     
Sbjct: 170 KLRPDTSFENRVRCLLTLKEL--GYETGAGSMVGLPGQTIDDLVDDLLFLKKYDFDMVGI 227

Query: 365 FKYSPRLGTPGSN 377
             + P   TP +N
Sbjct: 228 GPFIPHPDTPLAN 240


>gi|110801646|ref|YP_699409.1| radical SAM domain-containing protein [Clostridium perfringens
           SM101]
 gi|169344203|ref|ZP_02865185.1| radical SAM domain protein [Clostridium perfringens C str. JGS1495]
 gi|110682147|gb|ABG85517.1| radical SAM domain protein [Clostridium perfringens SM101]
 gi|169297661|gb|EDS79761.1| radical SAM domain protein [Clostridium perfringens C str. JGS1495]
          Length = 617

 Score = 53.0 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 79/224 (35%), Gaps = 18/224 (8%)

Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
           P+  +  +  K+ +  ++   D  E L +        R V        GC   C FC   
Sbjct: 220 PKYDDVPKKVKKRIINNFDQVDFPESLIVPYSEIVHDRVVLELF---RGCTNGCRFCQAG 276

Query: 197 YTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
                   +S   ++D+ARK++   G  E++L+   ++      + G       L+  L 
Sbjct: 277 MIYRPVREKSRKTLLDQARKMLKATGYDEVSLVS--LSTCDYSDIQG-------LVKDLI 327

Query: 256 EIKGLVRLRY--TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
           E  G   +     +      S  L+K    +      L    ++GS R+   +N+  +  
Sbjct: 328 EEHGKNNVSVALPSIRVDAFSVDLLKEIQKVRK--TGLTFAPEAGSQRMRDVINKGLSEE 385

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
              +             I   FI+G P ET +D      L +KI
Sbjct: 386 RILEAAKNAFESGWS-TIKLYFILGVPYETVEDAAEIGLLAEKI 428


>gi|18311115|ref|NP_563049.1| radical SAM domain protein [Clostridium perfringens str. 13]
 gi|110798831|ref|YP_696811.1| radical SAM domain-containing protein [Clostridium perfringens ATCC
           13124]
 gi|168212830|ref|ZP_02638455.1| radical SAM domain protein [Clostridium perfringens CPE str. F4969]
 gi|18145798|dbj|BAB81839.1| conserved hypothetical protein [Clostridium perfringens str. 13]
 gi|110673478|gb|ABG82465.1| radical SAM domain protein [Clostridium perfringens ATCC 13124]
 gi|170715654|gb|EDT27836.1| radical SAM domain protein [Clostridium perfringens CPE str. F4969]
          Length = 617

 Score = 53.0 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 79/224 (35%), Gaps = 18/224 (8%)

Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
           P+  +  +  K+ +  ++   D  E L +        R V        GC   C FC   
Sbjct: 220 PKYDDVPKKVKKRIINNFDQVDFPESLIVPYSEIVHDRVVLELF---RGCTNGCRFCQAG 276

Query: 197 YTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
                   +S   ++D+ARK++   G  E++L+   ++      + G       L+  L 
Sbjct: 277 MIYRPVREKSRKTLLDQARKMLKATGYDEVSLVS--LSTCDYSDIQG-------LVKDLI 327

Query: 256 EIKGLVRLRY--TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
           E  G   +     +      S  L+K    +      L    ++GS R+   +N+  +  
Sbjct: 328 EEHGKNNVSVALPSIRVDAFSVDLLKEIQKVRK--TGLTFAPEAGSQRMRDVINKGLSEE 385

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
              +             I   FI+G P ET +D      L +KI
Sbjct: 386 RILEAAKNAFESGWS-TIKLYFILGVPYETVEDAAEIGLLAEKI 428


>gi|15607073|ref|NP_214455.1| coproporphyrinogen III oxidase [Aquifex aeolicus VF5]
 gi|3913815|sp|O67886|HEMN_AQUAE RecName: Full=Oxygen-independent coproporphyrinogen-III oxidase;
           Short=Coprogen oxidase; Short=Coproporphyrinogenase
 gi|2984325|gb|AAC07846.1| oxygen-independent coproporphyrinogen II [Aquifex aeolicus VF5]
          Length = 456

 Score = 53.0 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 90/229 (39%), Gaps = 23/229 (10%)

Query: 152 TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC----VVPYTRGIEISRSL 207
           T+   ED++ +  I          +   +     C++ C +C    ++ + +GIE    L
Sbjct: 30  TEEVKEDEYVKRLIKSNERKTPLSLYFHIPF---CEQRCLYCGCNVIISHRKGIEEPY-L 85

Query: 208 SQV---VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE--IKGLVR 262
            +V   +D   + +D     I L     +   G             +  + +    G   
Sbjct: 86  ERVCREMDLVSQYLDKDRKVIQL-----HWGGGTPNYLSPEQIKWFMEEIRKRFEFGDNA 140

Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
                  PR ++D  IKA  D       + L VQ    ++ +++NR       ++ ++++
Sbjct: 141 EISIELDPRYLTDEQIKAIKDAG--FNRISLGVQDLDPKVQQAVNRVQPYELIKEKMEKL 198

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA--FSFKYSP 369
           R    + +I+ D I G P +T + F  T++ V ++   +   +SF Y P
Sbjct: 199 REAGFE-SINLDLIYGLPYQTKESFEKTVEKVIELNPDRIATYSFAYIP 246


>gi|32490925|ref|NP_871179.1| lipoyl synthase [Wigglesworthia glossinidia endosymbiont of
           Glossina brevipalpis]
 gi|31340203|sp|Q8D325|LIPA_WIGBR RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|25166131|dbj|BAC24322.1| lipA [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 316

 Score = 53.0 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/195 (14%), Positives = 68/195 (34%), Gaps = 12/195 (6%)

Query: 174 RGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVN 233
           RG   F+ +   C + C FC V   R   +     +  + ++  I   +  I +   +  
Sbjct: 80  RGTATFMILGSICTRRCPFCNVSSGRPSLV--DTKEPENLSKAAIKMKLKHIVITSVD-- 135

Query: 234 AWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV-LMPYLH 292
             R    DG    FS+ +  + +    +++       R  ++  +         +  +  
Sbjct: 136 --RDDLKDGGSEHFSNCIRFIRKKNPDIKIEILVPDFRGCTELALNNISTYPPDIFNHNL 193

Query: 293 LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352
             +     R+   +          +++++   + P+I   S  ++G  GET ++    M 
Sbjct: 194 ESI----PRLYSKVRPGANYKRSLELLEKFNLINPNIPTKSGLMLGL-GETKEEIIEVMK 248

Query: 353 LVDKIGYAQAFSFKY 367
            + K   +     +Y
Sbjct: 249 DLRKSYVSMITIGQY 263


>gi|288920343|ref|ZP_06414655.1| lipoic acid synthetase [Frankia sp. EUN1f]
 gi|288348291|gb|EFC82556.1| lipoic acid synthetase [Frankia sp. EUN1f]
          Length = 330

 Score = 53.0 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 43/249 (17%), Positives = 84/249 (33%), Gaps = 23/249 (9%)

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQ-EGCDKFCTFCVVPYTRGIEISRSLSQVVD 212
           ++V ++    +I +   +R+    A   I  + C + C FC +    G        +   
Sbjct: 55  HTVCEEAGCPNIYECWEDRE----ATFLIGGDVCTRRCDFCQI--DTGRPTPLDTDEPRR 108

Query: 213 EARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
            A  +   G+   T+ G      R    DG    +++ +  +        +         
Sbjct: 109 VAESVSTMGLRYATVTGV----ARDDLPDGGAWLYAETVRRIHAQSPGTGVEVLIPDFAG 164

Query: 273 MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAIS 332
             D L +  G    ++ +    V     RI + +           ++ R R+    +   
Sbjct: 165 HPDQLDEVFGAAPEVLAHNLETV----PRIFRRIRPGFRYERSLDVLTRARAA--GLVTK 218

Query: 333 SDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLL 392
           S+ I+G  GETDD+    M  +   G       +Y  R  TP       V+  V  +  +
Sbjct: 219 SNLILGL-GETDDEVEEAMTSLHNAGCDLLTVTQYL-RP-TP---RHHPVERWVHPDEFI 272

Query: 393 CLQKKLREQ 401
             Q++  E 
Sbjct: 273 AWQQRGTEI 281


>gi|282900043|ref|ZP_06308002.1| Lipoate synthase [Cylindrospermopsis raciborskii CS-505]
 gi|281195075|gb|EFA70013.1| Lipoate synthase [Cylindrospermopsis raciborskii CS-505]
          Length = 289

 Score = 53.0 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 73/220 (33%), Gaps = 10/220 (4%)

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
           + +  D S+    E  S  + G     G   FL +   C + C +C +        S   
Sbjct: 22  KEILRDLSLNTVCEEASCPNIGECFNAGTATFLIMGPACTRACPYCDI-DFDKKPKSLDP 80

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
           ++    A       +  + +   N    R    DG    F + + S+ E+     +    
Sbjct: 81  TEPSRLAEAARRMQLNHLVITSVN----RDDLPDGGASQFVNCINSVREVCPNTTIEILI 136

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
                    L      +  ++ +    V     R+ + +  +       +++ R R + P
Sbjct: 137 PDLCGNWQALESLLQSVPEVLNHNTETV----PRLYRRVRPQGDYQRTMELLQRSRQISP 192

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
                S  +VG  GETD++ R  M  +  +G       +Y
Sbjct: 193 TTYTKSGIMVGL-GETDEEVRQVMQDLRTVGCDILTIGQY 231


>gi|168205632|ref|ZP_02631637.1| radical SAM domain protein [Clostridium perfringens E str. JGS1987]
 gi|170662920|gb|EDT15603.1| radical SAM domain protein [Clostridium perfringens E str. JGS1987]
          Length = 617

 Score = 53.0 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 79/224 (35%), Gaps = 18/224 (8%)

Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196
           P+  +  +  K+ +  ++   D  E L +        R V        GC   C FC   
Sbjct: 220 PKYDDVPKKVKKRIINNFDQVDFPESLIVPYSEIVHDRVVLELF---RGCTNGCRFCQAG 276

Query: 197 YTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
                   +S   ++D+ARK++   G  E++L+   ++      + G       L+  L 
Sbjct: 277 MIYRPVREKSRKTLLDQARKMLKATGYDEVSLVS--LSTCDYSDIQG-------LVKDLI 327

Query: 256 EIKGLVRLRY--TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313
           E  G   +     +      S  L+K    +      L    ++GS R+   +N+  +  
Sbjct: 328 EEHGKNNVSVALPSIRVDAFSVDLLKEIQKVRK--TGLTFAPEAGSQRMRDVINKGLSEE 385

Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
              +             I   FI+G P ET +D      L +KI
Sbjct: 386 RILEAAKNAFESGWS-TIKLYFILGVPYETVEDAAEIGLLAEKI 428


>gi|163854006|ref|YP_001642049.1| radical SAM domain-containing protein [Methylobacterium extorquens
           PA1]
 gi|163665611|gb|ABY32978.1| Radical SAM domain protein [Methylobacterium extorquens PA1]
          Length = 688

 Score = 53.0 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 44/243 (18%), Positives = 78/243 (32%), Gaps = 34/243 (13%)

Query: 161 ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLID 219
              S  D        +   +TI  GC   CTFC +    G  I +RS   ++ E  ++ D
Sbjct: 332 PHPSYGDAKIPAWDMIKFSVTIMRGCFGGCTFCSITEHEGRVIQNRSEGSILREIERIRD 391

Query: 220 NGVCEITLL----GQNVNAWRGKGLDGE----------------------KCTFSDLLYS 253
                  ++    G   N +R    D +                            L   
Sbjct: 392 KTPGFTGVISDVGGPTANMYRMACKDPKIEAACRLPSCVFPDICPNLNTSHDDLIRLYRK 451

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRRH- 310
           + E+KG+ ++   +    D++    +   +L    +   L +  +      L  M +   
Sbjct: 452 VREVKGVKKVMVASGVRYDLAVRSPEYVEELVTHHVGGRLKIAPEHTERGPLDLMMKPGI 511

Query: 311 -TAYEYRQIIDRIRSVRPD-IAISSDFIVGFPGETDDDFRATMDLVDKIGY--AQAFSFK 366
            T   ++++ D           +   FI   PG TD+D       + K  Y   Q  +F 
Sbjct: 512 GTYDRFKEMFDAAAKKAGKKYYLIPYFIAAHPGTTDEDMLNLALWLKKNDYRADQVQTFL 571

Query: 367 YSP 369
            SP
Sbjct: 572 PSP 574


>gi|46580818|ref|YP_011626.1| radical SAM domain-containing protein [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|46450238|gb|AAS96886.1| radical SAM domain protein [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|311234522|gb|ADP87376.1| Radical SAM domain protein [Desulfovibrio vulgaris RCH1]
          Length = 680

 Score = 53.0 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 50/283 (17%), Positives = 94/283 (33%), Gaps = 40/283 (14%)

Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSLS 208
           +D  Y++    E              +   +T   GC   C+FC +   +G  I SRS  
Sbjct: 290 LDRLYALPFTREAHPSYRETVPAADMIRTSITTHRGCGGGCSFCSLALHQGRRIASRSRD 349

Query: 209 QVVDEARKLIDNGVCEITLL---GQNVNAWR--------------------GKGLDGEKC 245
            V+ EAR L       +++    G + N W+                     KG   ++ 
Sbjct: 350 SVLAEARDLAAAARKGVSISDVGGPSANMWQARCTLNPAKCRRASCMFPSVCKGFAVDQR 409

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMP--YLHLPVQSGSDRIL 303
               LL  + +  G+  +R  +    D++    +A     +      L +  +   D +L
Sbjct: 410 KAVRLLREVRDTPGVRNVRVASGVRFDLALREGEALRAYTMEFTGGQLKVAPEHICDEVL 469

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIA----ISSDFIVGFPGETDDDFRATMDLVDKIGY 359
           + M +      + + ++   +   +      +    +  FPG TDD  R     +   G+
Sbjct: 470 EYMRKPGLP-VFEKFLEAFAAFSDEAGKEQYVVPYLLSAFPGCTDDHMRTLSRWLQARGW 528

Query: 360 AQAFSFKYSPRLGTPGSNML--------EQVD-ENVKAERLLC 393
           +      + P  GT  + M           +      AERL  
Sbjct: 529 SPQQVQCFIPTPGTVATAMYAAGIDPEGNPIPVARTDAERLRQ 571


>gi|150015395|ref|YP_001307649.1| radical SAM domain-containing protein [Clostridium beijerinckii
           NCIMB 8052]
 gi|149901860|gb|ABR32693.1| Radical SAM domain protein [Clostridium beijerinckii NCIMB 8052]
          Length = 618

 Score = 53.0 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 42/238 (17%), Positives = 79/238 (33%), Gaps = 16/238 (6%)

Query: 125 NVVVGPQT--YYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTI 182
           +V+           P+  +  +   + +  +Y+  D    + +        R V      
Sbjct: 206 DVIYNEDNTIKEFRPKYDDVPKTITKRIINNYTKVDFPTDIIVPYSEIVHDRIVLELF-- 263

Query: 183 QEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLD 241
             GC   C FC           ++   + D ARKL+ + G  EI+L    ++      + 
Sbjct: 264 -RGCTNGCRFCQAGMLYRPVREKTREDLKDLARKLVKSTGYEEISLSS--LSTCDYSDIK 320

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
           G      +           V +   +      S  L+K    +      L    ++GS R
Sbjct: 321 GLITDLVNEHE-----DDRVGIALPSIRVDAFSVDLLKDIQKVRK--TGLTFAPEAGSQR 373

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
           +   +N+  T  +         +      +   F+VG P E  +D R   +L +KI Y
Sbjct: 374 MRDIINKGLTEDKILDAATSAFAAGWK-TLKLYFMVGLPYEELEDCRGIGELAEKIVY 430


>gi|288924985|ref|ZP_06418921.1| radical SAM domain protein [Prevotella buccae D17]
 gi|288338175|gb|EFC76525.1| radical SAM domain protein [Prevotella buccae D17]
          Length = 537

 Score = 53.0 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 48/296 (16%), Positives = 86/296 (29%), Gaps = 68/296 (22%)

Query: 139 LLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTA-------------FLTIQEG 185
           LL+       VV+  Y      E  +  D  Y R                    + I +G
Sbjct: 110 LLQAVDGKYAVVNPPYPTLSTEELDATFDLPYTRLPHPKYRGKTIPAYEMIKFSVNIHQG 169

Query: 186 CDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLI----------DNGVCEITLLGQ---- 230
           C   C FC +   +G  +  RS   +V E  K+I          D G     + G     
Sbjct: 170 CFGGCAFCTISAHQGKFVTCRSKESIVKEVEKVIHMPDFKGYLSDLGGPSANMYGMAGRN 229

Query: 231 -----------NVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT------------- 266
                       +N      LD +     D+  ++  + G+ +                 
Sbjct: 230 RKACEHCKRPSCINPQICPNLDTDHTALLDIYRAVDRLPGIKKSFIGSGVRYDLLLYKGK 289

Query: 267 ----TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR-----HTAYEYRQ 317
                +  R+ +  LI        +   L +  +  S  +L  M +          +   
Sbjct: 290 DEHANASAREYTRELI-----TRHVSGRLKVAPEHTSGAVLNLMRKPPFEQFGAFKQIFD 344

Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
            I++  ++R  I     FI   PG  ++D         K+ +       ++P   T
Sbjct: 345 RINKEENLRQQIIPY--FISSHPGCKEEDMAELAVKTKKLDFHLEQVQDFTPTPMT 398


>gi|189426236|ref|YP_001953413.1| radical SAM protein [Geobacter lovleyi SZ]
 gi|189422495|gb|ACD96893.1| Radical SAM domain protein [Geobacter lovleyi SZ]
          Length = 607

 Score = 53.0 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 43/263 (16%), Positives = 84/263 (31%), Gaps = 35/263 (13%)

Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSLS 208
           +D  Y++    E              +   LT   GC   C+FC +   +G  I SRS++
Sbjct: 267 LDAVYALPFSREPHPSYRETIPAFEQIKTSLTSHRGCYGGCSFCAISSHQGKFIQSRSMA 326

Query: 209 QVVDEARKLIDN----------GVCEITLLGQNVNAWRG------------KGLDGEKCT 246
            V  E + L+            G     + G    A  G            +     K  
Sbjct: 327 SVSAELQLLVKKPWFRGTISDLGGPTANMYGTGCGAPDGGHRCRRPSCLHPRPCPSLKAD 386

Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP------VQSGSD 300
               +  L +  G   +R T +    + + L++   D    +   H+        +   D
Sbjct: 387 DRSAVQLLGKASGSAGVR-TLTVTSGIRNDLLELQPDYCKTLIEQHVGGLLKVAPEHLVD 445

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSD----FIVGFPGETDDDFRATMDLVDK 356
           ++   M +   A  + + ++R R                + G PG   D+    +  + +
Sbjct: 446 QVTMLMRKPGKAA-FIRFLERFRDESRKAGKVQTVVPYLMSGHPGCRVDEMVLLLKELQR 504

Query: 357 IGYAQAFSFKYSPRLGTPGSNML 379
           +        +++P  GT  + M 
Sbjct: 505 LKLKVEQVQEFTPTPGTAATCMY 527


>gi|218438097|ref|YP_002376426.1| lipoyl synthase [Cyanothece sp. PCC 7424]
 gi|218170825|gb|ACK69558.1| lipoic acid synthetase [Cyanothece sp. PCC 7424]
          Length = 302

 Score = 53.0 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/186 (13%), Positives = 59/186 (31%), Gaps = 9/186 (4%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V             +    A  +   G+  + L        R    DG   
Sbjct: 74  CTRSCAFCQVDKGHAPMA-LDAEEPQKVAEAVQLLGLRYVVLTSV----ARDDLFDGGAS 128

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
            F  ++ ++ +     ++   T          I     +  ++    +      + + + 
Sbjct: 129 WFVKVIDAIRQNTPETQIEVLTPDFWGGKGGEITQKERVATVVAAKPVCYNHNIETVRRL 188

Query: 306 ---MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
              + R         ++  ++   P+IA  S  ++G  GET+ +   TM  +  +   + 
Sbjct: 189 QGTVRRGAKYERSLTVLQWVKQFDPNIATKSGLMLG-HGETETEIIETMKDLRAVECDRI 247

Query: 363 FSFKYS 368
              +Y 
Sbjct: 248 TLGQYM 253


>gi|91790094|ref|YP_551046.1| radical SAM family protein [Polaromonas sp. JS666]
 gi|91699319|gb|ABE46148.1| Radical SAM [Polaromonas sp. JS666]
          Length = 536

 Score = 53.0 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 33/201 (16%), Positives = 65/201 (32%), Gaps = 11/201 (5%)

Query: 179 FLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK 238
           ++    GC   C FC+    +       L   + E   L   G      + +  N     
Sbjct: 171 YVEASRGCPFKCEFCLSSLDKTAWA-FDLDLFMAEMEALYRRGARNFKFVDRTFNLKVEH 229

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD-MSDCLIKAHGDLDVLMPYLHLPVQS 297
            +   +     +  +   I+    L        D + D L               + +QS
Sbjct: 230 SVRILQFFLDRMKDADGRIQAAPDLFVHFEVVPDSLPDRLKALIVQFPAGSLQFEVGIQS 289

Query: 298 GSDRILKSMNRR----HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
            +  + + ++R+     TA   R ++ + ++        +D I G PGET + F    D 
Sbjct: 290 FNPDVQQRISRKQDNVKTADNLRWLVGQSQAHV-----HADLIFGLPGETLESFAQGFDR 344

Query: 354 VDKIGYAQAFSFKYSPRLGTP 374
           + ++   +          GTP
Sbjct: 345 LYELAPHEIQFGILKRLRGTP 365


>gi|288929078|ref|ZP_06422924.1| oxygen-independent coproporphyrinogen III oxidase [Prevotella sp.
           oral taxon 317 str. F0108]
 gi|288330062|gb|EFC68647.1| oxygen-independent coproporphyrinogen III oxidase [Prevotella sp.
           oral taxon 317 str. F0108]
          Length = 455

 Score = 53.0 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 79/223 (35%), Gaps = 28/223 (12%)

Query: 186 CDKFCTFC---VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG--L 240
           C   C +C    V   R            +      D    EI LL  +++  R      
Sbjct: 58  CQHLCHYCGCNSVAMARN-----------EVVEAYFDALHREINLLLPHLDKGRKISQIH 106

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV-------LMPYLHL 293
            G     S  L+ +  +   +   + T    +++     A+ + +              L
Sbjct: 107 YGGGSPTSIPLHHIKRLNEHLLGSFGTIENPEIAIECHPAYLNDEHWEQLIGCGFTRYSL 166

Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
            +Q   + +L+++NRR +      I++R+R       ++ DFI G PG+T   F  T+  
Sbjct: 167 GIQDFDENVLRTVNRRPSLLPVEHIVERLRQS--GAKVNLDFIYGLPGQTVQSFARTIAR 224

Query: 354 VDKIGYAQAFSFKYSPRLGTPGS-NMLEQV--DENVKAERLLC 393
              +   +  +F Y+      G   +LE+V      +  R+  
Sbjct: 225 AIDMRPNRLVTFSYAHVPYIYGRQRILEKVGLPPETEKMRMFE 267


>gi|239996597|ref|ZP_04717121.1| lipoyl synthase [Alteromonas macleodii ATCC 27126]
          Length = 320

 Score = 53.0 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 34/262 (12%), Positives = 88/262 (33%), Gaps = 21/262 (8%)

Query: 115 EEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDY--------SVEDKFERLSIV 166
           +E ++  P+  +    +   R PE + + +  +     D+        ++    E  S  
Sbjct: 15  DEKVKHIPVTIIPTEKEEMLRKPEWI-KIKLPRTTEKIDHIKQTLRKNNLHSVCEEASCP 73

Query: 167 DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEIT 226
           +       G   F+ + + C + C FC V    G  +  S  +    A+ + +  +  + 
Sbjct: 74  NLAECFNHGTATFMILGDICTRRCPFCDV--AHGKPLPPSAEEPEKLAKTIAEMNLRYVV 131

Query: 227 LLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGD-LD 285
           +   +    R    DG    F D + ++ E      +       R   D  ++   + + 
Sbjct: 132 ITSVD----RDDLRDGGAQHFVDCINAIREHSPTTTIEVLVPDFRGRMDRALEIFKNGVP 187

Query: 286 VLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDD 345
            +  +    +     R+ +             ++ + ++  PD+   S  ++G   E ++
Sbjct: 188 DVFNHNLETI----PRLYRECRPGANYQWSLDLLKKFKAQHPDVMTKSGLMMGMGEENEE 243

Query: 346 DFRATMDLVDKIGYAQAFSFKY 367
             +  +D +           +Y
Sbjct: 244 -IQGVLDDLRAHNVDMLTLGQY 264


>gi|226311675|ref|YP_002771569.1| hypothetical protein BBR47_20880 [Brevibacillus brevis NBRC 100599]
 gi|226094623|dbj|BAH43065.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599]
          Length = 322

 Score = 53.0 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/193 (18%), Positives = 70/193 (36%), Gaps = 15/193 (7%)

Query: 188 KFCTFCVVPYTRGI-----EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG 242
             CTFC     RG      +    L +   + +  +     +   LG             
Sbjct: 57  GGCTFC---SARGSGDFAGDRRMDLEKQFHDVKNRMHEKWPQAKYLG---FFQAYTNTYA 110

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL-DVLMPYLHLPVQSGSDR 301
                 ++   + + +G+V L    + P  + D +++   +L +    ++ L +Q+  + 
Sbjct: 111 PVEELREMYEVILQQEGVVGLSI-ATRPDCLPDDVVEYLAELNERTYLWVELGLQTVHEH 169

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
             + +NR H    Y   ++R+R    +I + S  I G PGE+ ++   T D V  +    
Sbjct: 170 TAQLINRAHDYQCYVDAVERLRK--HNIRVCSHIIYGLPGESHEEMMQTADAVAHLDVQG 227

Query: 362 AFSFKYSPRLGTP 374
                      TP
Sbjct: 228 IKIHLLHLLRKTP 240


>gi|225849941|ref|YP_002730175.1| radical SAM protein, family [Persephonella marina EX-H1]
 gi|225646612|gb|ACO04798.1| radical SAM protein, family [Persephonella marina EX-H1]
          Length = 307

 Score = 53.0 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 36/210 (17%), Positives = 69/210 (32%), Gaps = 23/210 (10%)

Query: 180 LTIQEG--CDKF--------CTFCV----VPYTRGIEISRSLSQVVDEARKLIDNGVCEI 225
           ++I  G  C           CTFC      PY    +   ++   ++++          I
Sbjct: 22  ISIDAGFTCPNRDGFKGHGGCTFCNNASFSPYAMSKQ---TVEDQIEKSIDFYKKRFKNI 78

Query: 226 TLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLD 285
              G                   ++     E   ++ +   T  P    D  +       
Sbjct: 79  K--GFIAYFQAFSNTYAPVSKLKEIYDRAMEYDEIIGMSIGT-RPDVAPDEALDLIATYT 135

Query: 286 VLMP--YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGET 343
              P  ++   +Q+ + + L+ +NR H   E+   + R +  R  I + +  IVG PG+T
Sbjct: 136 AYKPEIWIEYGLQTANIKTLREINRGHGVSEFVDAVLRTKK-RAGIKVCAHMIVGLPGDT 194

Query: 344 DDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
            +D+  T  L+  +G              T
Sbjct: 195 FEDYVETAKLIAALGIEGIKIHPLHIVKHT 224


>gi|223995897|ref|XP_002287622.1| lipoic acid synthetase [Thalassiosira pseudonana CCMP1335]
 gi|220976738|gb|EED95065.1| lipoic acid synthetase [Thalassiosira pseudonana CCMP1335]
          Length = 374

 Score = 53.0 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 70/197 (35%), Gaps = 17/197 (8%)

Query: 177 TAFLTIQ-EGCDKFCTFCVVPYTRGIEISRSL---SQVVDEARKLIDNGVCEITLLGQNV 232
           TA + I  + C + C+FC V  +R            +    A  +   G+  + L   + 
Sbjct: 123 TATIMIMGDTCTRGCSFCAVKTSRAP----PPLDQEEPNKVAEAVSSWGLDYVVLTSVD- 177

Query: 233 NAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM--SDCLIKAHGDLDVLMPY 290
              R   +D     F  ++  L + +   +     +   D      L+       + +  
Sbjct: 178 ---RDDLVDQGAGHFGRVVGRLKDGEKEKKKLIVEALTPDFQGDLDLVSIVATSGLDVYA 234

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
            ++         ++     +T     +++  ++SV P++   +  ++G  GETDD+ R T
Sbjct: 235 HNIETVERLTPRVRDRRAGYTQS--LKVLSHVKSVNPNVLTKTSIMLGL-GETDDEVRTT 291

Query: 351 MDLVDKIGYAQAFSFKY 367
           +  +           +Y
Sbjct: 292 LRDLRSNDVDVVTFGQY 308


>gi|242277644|ref|YP_002989773.1| oxygen-independent coproporphyrinogen III oxidase [Desulfovibrio
           salexigens DSM 2638]
 gi|242120538|gb|ACS78234.1| oxygen-independent coproporphyrinogen III oxidase [Desulfovibrio
           salexigens DSM 2638]
          Length = 398

 Score = 53.0 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 41/219 (18%), Positives = 76/219 (34%), Gaps = 23/219 (10%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNV-NAWRGKGLDGEK 244
           C + C +C          S+   QV       +   + EI L G+ + N   G    G  
Sbjct: 32  CKRKCNYCAFH-------SQPFEQV--GFAWYMKTLLSEIELWGKRLKNPRIGTVYFGGG 82

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMS--------DCLIKAHGDLDVLMPYLHLPVQ 296
                  + L  I   +R  ++ +   +++        + L       D+ +  L L  Q
Sbjct: 83  TPSLIPPFQLELIMDALRKHFSFTKGMEITLEANPDSANDLSYFKALYDMGINRLSLGFQ 142

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
           S  DR L+ + R H+A +        R       IS D I G P +   D+   +  V +
Sbjct: 143 SLDDRNLEMLGRPHSARQAADAYYMARKAGFG-NISIDLIWGLPRQKVKDWNNELKAVVQ 201

Query: 357 IGYAQAFSFKYSPRLGT----PGSNMLEQVDENVKAERL 391
           +       +  S   GT       ++  ++  + +  R+
Sbjct: 202 LKPEHMSCYGLSIEPGTVFGQRAEDLDMELPPDGEQARM 240


>gi|120601867|ref|YP_966267.1| radical SAM domain-containing protein [Desulfovibrio vulgaris DP4]
 gi|120562096|gb|ABM27840.1| Radical SAM N-terminal domain protein [Desulfovibrio vulgaris DP4]
          Length = 680

 Score = 53.0 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 50/283 (17%), Positives = 94/283 (33%), Gaps = 40/283 (14%)

Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSLS 208
           +D  Y++    E              +   +T   GC   C+FC +   +G  I SRS  
Sbjct: 290 LDRLYALPFTREAHPSYRETVPAADMIRTSITTHRGCGGGCSFCSLALHQGRRIASRSRD 349

Query: 209 QVVDEARKLIDNGVCEITLL---GQNVNAWR--------------------GKGLDGEKC 245
            V+ EAR L       +++    G + N W+                     KG   ++ 
Sbjct: 350 SVLAEARDLAAAARKGVSISDVGGPSANMWQARCTLNPAKCRRASCMFPSVCKGFAVDQR 409

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMP--YLHLPVQSGSDRIL 303
               LL  + +  G+  +R  +    D++    +A     +      L +  +   D +L
Sbjct: 410 KAVRLLREVRDTPGVRNVRVASGVRFDLALREGEALRAYTMEFTGGQLKVAPEHICDEVL 469

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIA----ISSDFIVGFPGETDDDFRATMDLVDKIGY 359
           + M +      + + ++   +   +      +    +  FPG TDD  R     +   G+
Sbjct: 470 EYMRKPGLP-VFEKFLEAFAAFSDEAGKEQYVVPYLLSAFPGCTDDHMRTLSRWLQARGW 528

Query: 360 AQAFSFKYSPRLGTPGSNML--------EQVD-ENVKAERLLC 393
           +      + P  GT  + M           +      AERL  
Sbjct: 529 SPQQVQCFIPTPGTVATAMYAAGIDPEGNPIPVARTDAERLRQ 571


>gi|15888761|ref|NP_354442.1| lipoyl synthase [Agrobacterium tumefaciens str. C58]
 gi|22001757|sp|Q8UFG1|LIPA_AGRT5 RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|15156511|gb|AAK87227.1| lipoic Acid Synthetase [Agrobacterium tumefaciens str. C58]
          Length = 323

 Score = 53.0 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/195 (13%), Positives = 69/195 (35%), Gaps = 11/195 (5%)

Query: 173 KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNV 232
           ++    F+ + E C + C FC V    G   +  + +  + A+ +   G+  + +   + 
Sbjct: 74  EKKHATFMIMGEICTRACAFCNV--ATGKPNALDMDEPENVAKAVKQMGLSHVVITSVD- 130

Query: 233 NAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLH 292
              R    DG    F  +++++        +   T         L +       +  +  
Sbjct: 131 ---RDDLADGGAEHFEKVIWAIRAASPTTTIEILTPDFLKKPGALERVVAAKPDVFNH-- 185

Query: 293 LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352
             +++     L ++      +   +++ R++ + P +   S  +VG  GE  ++    MD
Sbjct: 186 -NMETVPGNYL-TVRPGARYFHSVRLLQRVKELDPTMFTKSGIMVGL-GEERNEVLQLMD 242

Query: 353 LVDKIGYAQAFSFKY 367
            +           +Y
Sbjct: 243 DLRSADVDFLTIGQY 257


>gi|217970397|ref|YP_002355631.1| radical SAM protein [Thauera sp. MZ1T]
 gi|217507724|gb|ACK54735.1| Radical SAM domain protein [Thauera sp. MZ1T]
          Length = 726

 Score = 53.0 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 46/297 (15%), Positives = 91/297 (30%), Gaps = 49/297 (16%)

Query: 151 DTDYSVEDKFERLSIVDGGYNRKRG---VTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRS 206
           + D+  +  F R      G  R      +   + I  GC   CTFC +    G  I SRS
Sbjct: 367 EMDFVYDRPFARAPHPSYGGARIPAWDMIKFSINIMRGCFGGCTFCSITEHEGRIIQSRS 426

Query: 207 LSQVVDEARKLIDNG----VCEITLLGQNVNAWR----------------------GKGL 240
              ++ E  ++ D           L G   N +R                       + L
Sbjct: 427 HESIIHEIEEIRDKSPDFKGHITDLGGPTANMYRMACKSKAIEENCRRLSCVYPGICENL 486

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL--DVLMPYLHLPVQSG 298
           D +  +  +L      + G+ R+   +    D++    +   +L    +   L +  +  
Sbjct: 487 DTDHSSLVELYRKARAVPGIKRITIGSGLRYDLAVRSPEYVKELVTHHVSGLLKIAPEHT 546

Query: 299 SDRILKSMNRRHTAYE-----YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
            +  L  M +             +   ++   +  +     FI   PG TD+D       
Sbjct: 547 EENTLSKMMKPGIGAYEEFARMFEKYSKLAGKKQHLVPY--FIAAHPGTTDEDMLNLALW 604

Query: 354 VDKIGYAQAFSFKYSPRLGTPGSNML-------EQVDEN---VKAERLLCLQKKLRE 400
           +    +       + P      + M        ++V  +   V+  R   ++K  + 
Sbjct: 605 LKAHDFRLDQVQTFLPTPMALATTMYHSRKNPLKKVSADSELVETARAGRIRKLHKA 661


>gi|213692358|ref|YP_002322944.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Bifidobacterium longum subsp. infantis ATCC 15697]
 gi|213523819|gb|ACJ52566.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Bifidobacterium longum subsp. infantis ATCC 15697]
 gi|320458497|dbj|BAJ69118.1| putative coproporphyrinogen III oxidase [Bifidobacterium longum
           subsp. infantis ATCC 15697]
          Length = 392

 Score = 53.0 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 39/229 (17%), Positives = 72/229 (31%), Gaps = 26/229 (11%)

Query: 186 CDKFCTFC------VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
           C + C +C            G         V+ E   +           G    A     
Sbjct: 12  CLRRCGYCDFNTYTATDLGAGASRGHYAQMVIREMALIRQWQCDH----GIEEPAASTVF 67

Query: 240 LDGEKCTF---SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKA--HGDL-DVLMPYLHL 293
             G   T    +DL+  +  I+ +  L        + +   +      +L D     +  
Sbjct: 68  FGGGTPTVLAAADLVAVVDAIRAIWGLTPDAEITTEANPDTVDEAYIAELADGGFTRISF 127

Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
            +QS    +L +++R HT       +D   +    +  S D I G PGE+ +D+R +++ 
Sbjct: 128 GMQSAVPHVLATLDRTHTPSNVAAGVDA--ATMAGLRSSVDLIYGAPGESLEDWRTSVEA 185

Query: 354 VDKIGYAQAFSFKYSPRLGTPGSNM--------LEQVDENVKAERLLCL 394
              +G     ++  +    T              +  DE  K E    L
Sbjct: 186 ALDLGVHHISAYALTVEPTTKMGRRIAAGTLPKPDDDDEAAKYELADEL 234


>gi|121704822|ref|XP_001270674.1| lipoic acid synthetase precursor [Aspergillus clavatus NRRL 1]
 gi|306755816|sp|A1CJC4|LIPA_ASPCL RecName: Full=Lipoyl synthase, mitochondrial; AltName: Full=Lipoate
           synthase; Short=LS; Short=Lip-syn; AltName: Full=Lipoic
           acid synthase; Flags: Precursor
 gi|119398820|gb|EAW09248.1| lipoic acid synthetase precursor [Aspergillus clavatus NRRL 1]
          Length = 415

 Score = 53.0 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 39/262 (14%), Positives = 94/262 (35%), Gaps = 17/262 (6%)

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQ-EGCDKFCTFCVVPYTR 199
           +R +   R ++     E+          G + K   TA + +  + C + C FC V  +R
Sbjct: 117 QRLKKDLRGLNLHTVCEEARCPNISDCWGGSDKSSATATIMLMGDTCTRGCRFCSVKTSR 176

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
                    +  + A  +   G+  + L   +    R   +DG    F++ +  + +   
Sbjct: 177 APP-PLDPHEPENTAEAISRWGLGYVVLTSVD----RDDLVDGGARHFAETVIKIKQKAP 231

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDV-LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
            + +   T         ++K      + +  +    V++ + ++     RR    +  ++
Sbjct: 232 SILVECLTGD-YAGDLDMVKLVARSGLDVYAHNVETVEALTPQVRD---RRANFQQSLRV 287

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           +D  +  +P +   +  ++G  GETD+     +  +  +        +Y  R     +  
Sbjct: 288 LDAAKKAQPTLITKTSLMLGL-GETDEQLWDALRQLRAVNVDVVTFGQYM-RP----TKR 341

Query: 379 LEQVDENVKAERLLCLQKKLRE 400
              V E V  +R    +++  E
Sbjct: 342 HMAVHEYVTPDRFELWRQRALE 363


>gi|94970523|ref|YP_592571.1| radical SAM family Fe-S protein [Candidatus Koribacter versatilis
           Ellin345]
 gi|94552573|gb|ABF42497.1| Fe-S protein, radical SAM family [Candidatus Koribacter versatilis
           Ellin345]
          Length = 437

 Score = 53.0 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 37/241 (15%), Positives = 79/241 (32%), Gaps = 23/241 (9%)

Query: 153 DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVD 212
           +YS+E    R  +  G      G  A L    GC   C FC     R     R +  ++ 
Sbjct: 180 NYSIERHAHRHHVFFG-----EGRGAELEFARGCPWNCYFCNKQLFRNKFRERPVDAILS 234

Query: 213 EARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
           E   +I  GV  +  + +     +       +    ++      I    R+        D
Sbjct: 235 EIDAVIARGVNYVYFIDEIFGVGKNV-----RMLLEEISKRNVSIGFQTRIDLWDEDSLD 289

Query: 273 MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR--RHTAYEYRQIIDRIRSVRPDIA 330
           +     +AH         +   ++S ++   + +N+  R T     +++   +       
Sbjct: 290 LLG---RAH------CISMECGIESITEEGREELNKNCRMTTERITELLIYAKEKAGIPW 340

Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN-MLEQVDENVKAE 389
           + ++ I+    + ++  R   D +   G   +      P  G+P  +       ++   E
Sbjct: 341 VQANLILTDKDDKNEIHRW-QDNLKSHGVWVSEPVPMFPFPGSPLYSQTFGAAPDDNAWE 399

Query: 390 R 390
           R
Sbjct: 400 R 400


>gi|314915161|gb|EFS78992.1| radical SAM domain protein [Propionibacterium acnes HL005PA4]
          Length = 650

 Score = 53.0 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 61/386 (15%), Positives = 114/386 (29%), Gaps = 54/386 (13%)

Query: 71  HIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGP 130
            +     E        IR+ K      G + L+V      +           + +  +G 
Sbjct: 166 AVLGDGEEACLEISEIIRDWKKEGCPGGREGLLVRLAATGRIYVPCFYDVEYLDDGTIGK 225

Query: 131 QTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190
               RL            V+D D     K   + + +  + R       + I  GC + C
Sbjct: 226 VAPNRLEA--PYTVSKHTVMDLDEWQYPKRPIVPVAETVHERYS-----VEIFRGCTRGC 278

Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFSD 249
            FC           RS+  +       +   G+ E+ LL   +++     +       +D
Sbjct: 279 RFCQAGMITRPVRERSIDAIAQMVDGGLQATGLEEVGLLS--LSSADHSEISDITKGLAD 336

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
                      V L   ++     +  L             L    + GS+R+ + +N++
Sbjct: 337 RYE-----GTNVSLSLPSTRVDTFNIDLANELSRNGR-RSGLTFAPEGGSERMRRVINKK 390

Query: 310 HTAYEYRQIIDR-----IRSVRPDIAISSDFIVGFPGETDDDFRATMDLV---------- 354
            T  +  + +        R ++        F+ G P ETD+D     D+           
Sbjct: 391 VTEEDLIRTVATAFGNGWRQIK------LYFMCGLPTETDEDVLGIHDMASHVVAAGRAA 444

Query: 355 ---DKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLRE-------QQVS 404
                I         + P+  TP      Q   +    RL  L+  +R          + 
Sbjct: 445 AGRKDIRCT-ISIGGFVPKPHTP-FQWAAQASADEVDHRLSVLRDSIRADRQFGRSIGMR 502

Query: 405 FNDACVGQIIEVLIEKHGKEKGKLVG 430
           ++D   G     +IE       + VG
Sbjct: 503 YHDGRPG-----IIEGLLSRGDRRVG 523


>gi|301022113|ref|ZP_07186039.1| radical SAM protein, TIGR01212 family [Escherichia coli MS 69-1]
 gi|300397709|gb|EFJ81247.1| radical SAM protein, TIGR01212 family [Escherichia coli MS 69-1]
          Length = 309

 Score = 53.0 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 43/237 (18%), Positives = 75/237 (31%), Gaps = 36/237 (15%)

Query: 181 TIQEGCDKFCTFCVV-PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
           TI  G    CTFC V  +    +  RS+++ +     L++     +              
Sbjct: 39  TIGRG---GCTFCNVASFADEAQQHRSIAEQLAHQANLVNRAKRYLAYF-----QAYTST 90

Query: 240 LDGEKCTFSDLLYSLSE--IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQS 297
               +   S    ++S+  I GL  +        D    L+  + D    + +L L +Q+
Sbjct: 91  FAEVQVLRSMYQQAVSQANIVGLC-VGTRPDCVPDAVLDLLCEYKDQGYEV-WLELGLQT 148

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
             D+ L  +NR H    Y++     R     + + S  IVG PGE   +   T++ V + 
Sbjct: 149 AHDKTLHRINRGHDFACYQRTTQLARER--GLKVCSHLIVGLPGEGKAECLQTLERVVET 206

Query: 358 GYAQAFSFKYSPRLG---------------------TPGSNMLEQVDENVKAERLLC 393
           G             G                          M+      V   R+  
Sbjct: 207 GVDGIKLHPLHIVKGSIMAKAWEAGRLNGIELEDYTLTAGEMIRHTPPEVIYHRISA 263


>gi|237730130|ref|ZP_04560611.1| conserved hypothetical protein [Citrobacter sp. 30_2]
 gi|226908736|gb|EEH94654.1| conserved hypothetical protein [Citrobacter sp. 30_2]
          Length = 309

 Score = 53.0 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 44/237 (18%), Positives = 77/237 (32%), Gaps = 36/237 (15%)

Query: 181 TIQEGCDKFCTFCVV-PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
           TI  G    CTFC V  +    +   S+++ ++    L++     +              
Sbjct: 39  TIGRG---GCTFCNVASFADEAQQHHSIAEQLEHQAHLVNRAKRYLAYF-----QAYTST 90

Query: 240 LDGEKCTFSDLLYSLSE--IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQS 297
               +   S    ++S+  I GL  +        D    L+  + DL   + +L L +Q+
Sbjct: 91  FAEVQVLRSMYQQAVSQASIVGLC-VGTRPDCVPDAVLDLLCEYKDLGYEV-WLELGLQT 148

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
             D+ L  +NR H    Y++     R     + + S  IVG PGE   +   TM+ V + 
Sbjct: 149 AHDKTLHRINRGHDFACYQRTTRLARER--GLKVCSHLIVGLPGEGQAECLQTMERVVET 206

Query: 358 GYAQAFSFKYSPRLGT---------------------PGSNMLEQVDENVKAERLLC 393
           G             G+                         M+      V   R+  
Sbjct: 207 GVDGIKLHPLHIVKGSTMAKAWEAGRLNGIELDDYTVTAGEMIRHTPPEVIYHRISA 263


>gi|148381520|ref|YP_001256061.1| radical SAM domain protein [Clostridium botulinum A str. ATCC 3502]
 gi|153933305|ref|YP_001385894.1| biotin synthase [Clostridium botulinum A str. ATCC 19397]
 gi|153935870|ref|YP_001389301.1| biotin synthase [Clostridium botulinum A str. Hall]
 gi|148291004|emb|CAL85141.1| biotin synthase [Clostridium botulinum A str. ATCC 3502]
 gi|152929349|gb|ABS34849.1| radical SAM domain protein [Clostridium botulinum A str. ATCC
           19397]
 gi|152931784|gb|ABS37283.1| radical SAM domain protein [Clostridium botulinum A str. Hall]
          Length = 348

 Score = 53.0 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/229 (13%), Positives = 69/229 (30%), Gaps = 22/229 (9%)

Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP-YTRGIEISR-SL 207
           +D +      ++        YN K  +   +     C   C +C +       E  R S 
Sbjct: 26  IDKENKKYLIYKAHETSLKHYNSKVYLRGLIEFTNYCKNACLYCGISCNNNNAERYRLSE 85

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS---EIKGLVRLR 264
            ++++  +K    G     L G     +    +     +   L  + +    I       
Sbjct: 86  EEILNCCKKGYSLGYRTFVLQGGEDPYYTDNKIIDIIKSIKKLFPNCAVTLSIGEKSYET 145

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
           Y   +       L++       L   LH  +         S   RH+     + I     
Sbjct: 146 YKKFYDAGADRYLLRHETASKNLYEKLHPDM---------SFENRHSCLRNLKKI----- 191

Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
                 + + F++G P +T++D+   +  + ++         + P   T
Sbjct: 192 ---GYQVGAGFMIGLPSQTNEDYVNDLIFLKELKPHMVGIGPFIPHKDT 237


>gi|126698845|ref|YP_001087742.1| radical SAM superfamily protein [Clostridium difficile 630]
 gi|254974793|ref|ZP_05271265.1| radical SAM-superfamily protein [Clostridium difficile QCD-66c26]
 gi|255092181|ref|ZP_05321659.1| radical SAM-superfamily protein [Clostridium difficile CIP 107932]
 gi|255306205|ref|ZP_05350377.1| radical SAM-superfamily protein [Clostridium difficile ATCC 43255]
 gi|255313920|ref|ZP_05355503.1| radical SAM-superfamily protein [Clostridium difficile QCD-76w55]
 gi|255516599|ref|ZP_05384275.1| radical SAM-superfamily protein [Clostridium difficile QCD-97b34]
 gi|255649699|ref|ZP_05396601.1| radical SAM-superfamily protein [Clostridium difficile QCD-37x79]
 gi|260682855|ref|YP_003214140.1| radical SAM-superfamily protein [Clostridium difficile CD196]
 gi|260686453|ref|YP_003217586.1| radical SAM-superfamily protein [Clostridium difficile R20291]
 gi|306519815|ref|ZP_07406162.1| radical SAM-superfamily protein [Clostridium difficile QCD-32g58]
 gi|115250282|emb|CAJ68104.1| putative radical SAM-superfamily protein [Clostridium difficile]
 gi|260209018|emb|CBA62110.1| radical SAM-superfamily protein [Clostridium difficile CD196]
 gi|260212469|emb|CBE03373.1| radical SAM-superfamily protein [Clostridium difficile R20291]
          Length = 356

 Score = 53.0 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 33/213 (15%), Positives = 75/213 (35%), Gaps = 13/213 (6%)

Query: 173 KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCE----ITLL 228
           K+ +       +GC   C FC      G+    +     +   + ++    +    I   
Sbjct: 2   KKRIIPIFVPHKGCPHDCIFCNQKKITGVSTDVTSEDARNIIEECLETIDKDADVEIAFF 61

Query: 229 GQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLM 288
           G +  A     +D +K   S     + +  GLV+    ++ P  + + ++    +     
Sbjct: 62  GGSFTAI---DIDIQKSLLSVAKEYVEK--GLVKDIRMSTRPDCIDEDILSMLKEYKT-- 114

Query: 289 PYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFR 348
             + L VQS  +++L    R H +    +    I++    I +    ++G P +T++   
Sbjct: 115 SIIELGVQSLDEKVLLDSIRGHQSEIVYKSSKMIKNS--GIKLGLQMMIGLPADTEEKCI 172

Query: 349 ATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
            T     ++       +       T    ++EQ
Sbjct: 173 FTAKKFVELKPDCVRVYPTLVVKDTGLEKLMEQ 205


>gi|118579048|ref|YP_900298.1| putative radical SAM protein [Pelobacter propionicus DSM 2379]
 gi|118501758|gb|ABK98240.1| conserved hypothetical radical SAM protein [Pelobacter propionicus
           DSM 2379]
          Length = 331

 Score = 53.0 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 4/96 (4%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +L L +QS  D  L  +NRRH    + + ++  RS    + + +  I+G PGE+ DD  A
Sbjct: 169 WLELGLQSIHDTSLAYINRRHDYACFLRAVEECRSR--SLRVCAHVILGLPGESRDDMLA 226

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTPGSNML--EQVD 383
               ++++G A           GT  + M    +V 
Sbjct: 227 MAGELNRLGLAGVKLHLLHVMKGTRLAEMHARGEVP 262


>gi|313893253|ref|ZP_07826828.1| radical SAM domain protein [Veillonella sp. oral taxon 158 str.
           F0412]
 gi|313442149|gb|EFR60566.1| radical SAM domain protein [Veillonella sp. oral taxon 158 str.
           F0412]
          Length = 612

 Score = 53.0 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 44/274 (16%), Positives = 85/274 (31%), Gaps = 41/274 (14%)

Query: 99  GDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR---------- 148
            D+ +++ G       +EIL R   V+ VV  +      +L+     GK           
Sbjct: 83  PDIKIILGGPEVSFTADEILNRCHAVDYVVQGEGEEAFYKLISELTNGKDGLTEEIAGVR 142

Query: 149 ----------VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
                       +T    +        V+           +     GC   C +C+    
Sbjct: 143 GRHISGQLMGSTETVEVKDLSTIPFPYVEEDMVDLEHKIIYYESSRGCPFSCQYCL-SGN 201

Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258
           +         + + E +  ID+ V ++  + +  N                L+  + +  
Sbjct: 202 KNTVRFFPQERTLKELQWFIDHKVKQVKFVDRTFNC--------APHHHRPLMEFMRDAD 253

Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
                      P  M++       +       + + VQS   + L ++N R+  + Y Q 
Sbjct: 254 TETNFHLE-MEPELMTEWETTILCETPPGRIQIEVGVQSTHKKTLDAIN-RYNDWPYIQ- 310

Query: 319 IDRIRSVRPDI-----AISSDFIVGFPGETDDDF 347
               +++RP I      +  D IVG P E    F
Sbjct: 311 ----KAIRPIIEAGRTHVHMDLIVGLPYENKARF 340


>gi|147677318|ref|YP_001211533.1| biotin synthase [Pelotomaculum thermopropionicum SI]
 gi|146273415|dbj|BAF59164.1| biotin synthase and related enzymes [Pelotomaculum
           thermopropionicum SI]
          Length = 359

 Score = 53.0 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 46/245 (18%), Positives = 81/245 (33%), Gaps = 29/245 (11%)

Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRG----VTAFLTIQEGCDKFCTFCVV 195
           LE     +  V      E+        D   +R  G    +   +     C   C +C +
Sbjct: 15  LEELSRDELAVLISADEEESAALFDCADMMRSRFMGDEVHLRGIIEFSNICSSNCYYCGL 74

Query: 196 PYTRGIEISRSL--SQVVDEARKLIDNGVCEITL-LGQNVNAWRGKGLDGEKCTFSDLLY 252
                      +  +++++ ARK    G   I L  G++ +   G            L  
Sbjct: 75  RKGNTALKRYRMSKAEILESARKAAVLGCRTIVLQSGEDRSYPAG-----------LLAE 123

Query: 253 SLSEIKGLVRLRYTTS--HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
            ++EIK  + +  T S          L +  G    L+ +         D  L S  R  
Sbjct: 124 IVAEIKSELDVAITLSVGERPREDYALWREAGADRYLLKHET------CDGKLFSELRPG 177

Query: 311 TA-YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369
           T   E  Q +  +R +     + S  +VG PG+T +     + L+ ++    A    + P
Sbjct: 178 TVLEERLQRLAWLREL--GYQVGSGNMVGLPGQTVETLAGDIVLMREMEVEMAGIGPFVP 235

Query: 370 RLGTP 374
              TP
Sbjct: 236 NRQTP 240


>gi|290960385|ref|YP_003491567.1| radical SAM protein [Streptomyces scabiei 87.22]
 gi|260649911|emb|CBG73027.1| putative radical SAM protein [Streptomyces scabiei 87.22]
          Length = 651

 Score = 53.0 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 56/319 (17%), Positives = 100/319 (31%), Gaps = 59/319 (18%)

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
             V+D D     K   + + +  + R       + I  GC + C FC           RS
Sbjct: 240 HTVMDLDEWPYPKQPLVPLAETVHERMS-----VEIFRGCTRGCRFCQAGMITRPVRERS 294

Query: 207 LSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           ++ + +   K +   G  E+ LL     +       G+        Y   +I     L  
Sbjct: 295 ITGIGEMVDKGLKATGFEEVGLLS---LSSADHSEIGDIAKGLADRYEEDKIG----LSL 347

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR---- 321
            ++     +  L             L    + GS+R+ K +N+  +  +  + +      
Sbjct: 348 PSTRVDAFNVDLANELTRNGR-RSGLTFAPEGGSERMRKVINKMVSEEDLIRTVSTAYGN 406

Query: 322 -IRSVRPDIAISSDFIVGFPGETDDDFRA----TMDLVDKIGYAQ--------AFSFKYS 368
             R V+        F+ G P ETD+D        M ++ +                  + 
Sbjct: 407 GWRQVK------LYFMCGLPTETDEDVLQIADMAMKVIAEGRKVSGQNDIRCTVSIGGFV 460

Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLR---------------------EQQVSFND 407
           P+  TP      Q+       RL  L+ K+R                     E  +S  D
Sbjct: 461 PKPHTP-FQWAPQLSAEGTDARLEKLRDKIRGDKKYGRSIGFRYHDGKPGIVEGLLSRGD 519

Query: 408 ACVGQIIEVLIEKHGKEKG 426
             +G +I  + E  G+  G
Sbjct: 520 RRIGAVIRAVYEDGGRFDG 538


>gi|238920822|ref|YP_002934337.1| lipoyl synthase [Edwardsiella ictaluri 93-146]
 gi|259494932|sp|C5BGD9|LIPA_EDWI9 RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|238870391|gb|ACR70102.1| lipoyl synthase, putative [Edwardsiella ictaluri 93-146]
          Length = 321

 Score = 53.0 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/183 (16%), Positives = 66/183 (36%), Gaps = 12/183 (6%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V    G  ++   ++    A+ + D G+  + +   +    R    DG   
Sbjct: 94  CTRRCPFCDV--AHGRPLAPDTNEPEKLAQTIADMGLRYVVITSVD----RDDLRDGGAQ 147

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRD-MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304
            F+D ++++      +R+       R  M   L   H +   +  +    +     R+ +
Sbjct: 148 HFADCIHAIRAKSPQIRIETLVPDFRGRMDRALEILHDNPPDVFNHNLENI----PRLYR 203

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
            +          +++ + +   P I   S  +VG  GET+ +    M  +   G      
Sbjct: 204 QVRPGANYEWSLRLLQQFKQQHPQIPTKSGLMVGL-GETNQEIIEVMRDLRAHGVTMLTL 262

Query: 365 FKY 367
            +Y
Sbjct: 263 GQY 265


>gi|255100265|ref|ZP_05329242.1| radical SAM-superfamily protein [Clostridium difficile QCD-63q42]
          Length = 356

 Score = 53.0 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 33/213 (15%), Positives = 75/213 (35%), Gaps = 13/213 (6%)

Query: 173 KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCE----ITLL 228
           K+ +       +GC   C FC      G+    +     +   + ++    +    I   
Sbjct: 2   KKRIIPIFVPHKGCPHDCIFCNQKKITGVSTDVTSEDARNIIEECLETIDKDADVEIAFF 61

Query: 229 GQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLM 288
           G +  A     +D +K   S     + +  GLV+    ++ P  + + ++    +     
Sbjct: 62  GGSFTAI---DIDIQKSLLSVAKEYVEK--GLVKDIRMSTRPDCIDEDILSMLKEYKT-- 114

Query: 289 PYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFR 348
             + L VQS  +++L    R H +    +    I++    I +    ++G P +T++   
Sbjct: 115 SIIELGVQSLDEKVLLDSIRGHQSEIVYKSSKMIKNS--GIKLGLQMMIGLPADTEEKCI 172

Query: 349 ATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
            T     ++       +       T    ++EQ
Sbjct: 173 FTAKKFVELKPDCVRVYPTLVVKDTGLEKLMEQ 205


>gi|68062394|ref|XP_673203.1| lipoate synthase [Plasmodium berghei strain ANKA]
 gi|56490879|emb|CAI02329.1| lipoate synthase, putative [Plasmodium berghei]
          Length = 327

 Score = 53.0 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/199 (14%), Positives = 70/199 (35%), Gaps = 21/199 (10%)

Query: 175 GVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVD---EARKLIDNGVCEITLLGQN 231
           G    + + + C + C FC +  +           + +    A+ + +  +  I L   +
Sbjct: 71  GTATIMLLGDTCTRGCKFCSIKTSSKP----PPPDINEPFNTAKAICEWDINYIVLTSVD 126

Query: 232 VNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPR-DMSDCLIKAHGDLDVLMPY 290
               R    DG    F+  +  +   K  + +    S  + ++      A   LDV    
Sbjct: 127 ----RDDLPDGGADHFAKTVELIKFSKPNILIECLVSDFQGNIDSIKRLALSGLDVYAHN 182

Query: 291 LHLPVQSGSDRILKSM--NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFR 348
           +       + + L+    ++R    +   ++ + + + P++   +  ++G  GET ++  
Sbjct: 183 IE------TVKRLQKYVRDKRANYEQSLFVLKKAKEINPNLYTKTSIMLGL-GETQEEIL 235

Query: 349 ATMDLVDKIGYAQAFSFKY 367
            TM      G       +Y
Sbjct: 236 QTMKDARSNGIDVITFGQY 254


>gi|115488116|ref|NP_001066545.1| Os12g0270100 [Oryza sativa Japonica Group]
 gi|108862462|gb|ABA97374.2| oxygen-independent coproporphyrinogen III oxidase family protein,
           expressed [Oryza sativa Japonica Group]
 gi|113649052|dbj|BAF29564.1| Os12g0270100 [Oryza sativa Japonica Group]
 gi|215696979|dbj|BAG90973.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 467

 Score = 53.0 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/211 (15%), Positives = 68/211 (32%), Gaps = 20/211 (9%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLS---------QVVDEARKLIDNGVCEITLLGQNVNAWR 236
           C K C +C  P       S   S         ++ D  R L+   V     +  +     
Sbjct: 54  CRKRCHYCDFPIVALGTSSPPTSPHGGDGDDPRIADYVRLLLRE-VAATRPVSDDGVPLE 112

Query: 237 GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCL----IKAHGDLDVL---MP 289
                G   +       ++ +   +R R+  S   ++S  +      A    +++   + 
Sbjct: 113 TVFFGGGTPSLV-PPRLVAAVLDALRTRFGLSASPEVSIEMDPGTFDAAKLRELVGLGVN 171

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS-DFIVGFPGETDDDFR 348
            + L VQ+  + +L++  R H   E    +  I +    +   S D I   P +T++ + 
Sbjct: 172 RVSLGVQAFQEDLLRACGRAHGLREVHDAVG-IVTACEGLQNWSMDLISSLPNQTEEMWE 230

Query: 349 ATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
            ++             +      GT    + 
Sbjct: 231 ESLRCTVDARPTHVSVYDLQIEQGTKFGQLY 261


>gi|37521804|ref|NP_925181.1| hypothetical protein glr2235 [Gloeobacter violaceus PCC 7421]
 gi|35212802|dbj|BAC90176.1| glr2235 [Gloeobacter violaceus PCC 7421]
          Length = 326

 Score = 53.0 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/202 (15%), Positives = 68/202 (33%), Gaps = 11/202 (5%)

Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC-- 245
             CTFC        ++S   + + ++ R  +     +     +   A+     +      
Sbjct: 55  GGCTFCDAS-GSSAQVSPPATPLDEQLRLGMAGWQRKFGEKARKFIAYYQAFTNTHAPVD 113

Query: 246 TFSDLLYSLSEIKGLVRLRYT--TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
              ++  +  E    + +          +    L+        L  ++   +QS  D+ L
Sbjct: 114 RLREVYRAGMEHPDCIGIAIGTRPDCVGEPVLELLAEMASRKYL--WVEYGLQSAHDQTL 171

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
             +NR HT  E+   + R R     I + +  I G PG+T      ++DL+  +G     
Sbjct: 172 ARINRAHTVAEFVDAVRRTRGR--GIEVCAHLIHGLPGDTPAMMLQSVDLLASLGVEGVK 229

Query: 364 SFKYSPRLGT--PGSNMLEQVD 383
                   G+   G  +  ++ 
Sbjct: 230 IHSLHIVKGSVMAGQYLRGEIP 251


>gi|332163060|ref|YP_004299637.1| hypothetical protein YE105_C3440 [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325667290|gb|ADZ43934.1| hypothetical protein YE105_C3440 [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330862732|emb|CBX72874.1| uncharacterized protein yhcC [Yersinia enterocolitica W22703]
          Length = 300

 Score = 53.0 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 2/83 (2%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +L L +Q+ +D+ LK +NR H    Y+Q   R R+    + +    IVG PGE       
Sbjct: 141 WLELGLQTANDKTLKRINRGHDFACYQQTARRARAR--GLKVCCHLIVGLPGEEQAQCME 198

Query: 350 TMDLVDKIGYAQAFSFKYSPRLG 372
           T++ V   G             G
Sbjct: 199 TLEKVVATGVDGIKLHPLHIVEG 221


>gi|306819681|ref|ZP_07453342.1| radical SAM domain protein [Eubacterium yurii subsp. margaretiae
           ATCC 43715]
 gi|304552247|gb|EFM40177.1| radical SAM domain protein [Eubacterium yurii subsp. margaretiae
           ATCC 43715]
          Length = 330

 Score = 53.0 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/186 (18%), Positives = 65/186 (34%), Gaps = 12/186 (6%)

Query: 185 GCDKFCTFCVVPYTRGIEISRSLSQ----VVDEARKLIDNGVCEITLLGQNVNAWRGKGL 240
           GC   C FC      G +           ++D    + +  + EI   G +  A   +  
Sbjct: 2   GCPNDCIFCNQVKISGQKTLLDYEAMREGIMDSISTMKETDIVEIAFFGGSFTAIEKEVQ 61

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300
           +        L   ++   G       ++ P  + + +I+        +  + L VQS  D
Sbjct: 62  E----RCLSLANDIAGQIGRQVQVKLSTRPDAIDEEVIERLLRHK--VDTVELGVQSMDD 115

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
            +L+  NR H +         IR    +I +    ++G  G+T +    T+  V  IG  
Sbjct: 116 EVLRLNNRGHDSKSVYDACKLIRKT--NIKLGLQLMIGLLGDTKEKLYQTIQKVVDIGPD 173

Query: 361 QAFSFK 366
            A  + 
Sbjct: 174 IARIYP 179


>gi|255030880|ref|ZP_05302831.1| hypothetical protein LmonL_20371 [Listeria monocytogenes LO28]
          Length = 172

 Score = 53.0 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 35/85 (41%), Gaps = 2/85 (2%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +L L +QS  D   + +NR H    Y + + +++    +I I +  I G P ET +    
Sbjct: 4   WLELGLQSAHDETGRLINRAHDYDCYVEGVRKLQK--HNIRICTHIINGLPKETPEMMME 61

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTP 374
           T   V + G             GTP
Sbjct: 62  TTRKVVESGVDGIKIHLLHLLKGTP 86


>gi|144899771|emb|CAM76635.1| Fe-S oxidoreductase [Magnetospirillum gryphiswaldense MSR-1]
          Length = 519

 Score = 53.0 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 55/364 (15%), Positives = 110/364 (30%), Gaps = 81/364 (22%)

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
           G I+ + +   +      +V+ G +  +  ++++R  P V+V    + +   PE+L    
Sbjct: 75  GSIKRIVHVAREVCPSACIVLGGGILTSLPQDMMRLMPEVDVGCIGEGFVTFPEILAHVD 134

Query: 145 F---------------------GKRVV--------DTDYSVEDKFERLSIVDGGYNRKRG 175
                                 G+ V+        D D      F+   + +  +     
Sbjct: 135 RIAAGGAAEWVKVAGTISRNDDGQLVLSPQRDLIHDLDVLPYPAFDLFPLEEVYFKNSEM 194

Query: 176 VTAF----------LTIQEGCDKFCTFCV-----------------------VPYTRGIE 202
           + +           +    GC   C +C                        VP      
Sbjct: 195 MFSAEGMMAQRRLDINASYGCSMICRYCYHLGIAGDMRYEQDESGNIDIVFDVPGKYTRV 254

Query: 203 -ISRSLSQVVDEARKLIDN-GVCEITLLGQNVNA---WRGKGLDGEKCTFSD-------- 249
               S   +V  A+ L+D   +  +  L +N+     + G+    E C            
Sbjct: 255 TRYHSPEYIVKFAKYLVDKYNIDYVLFLDENLMTMDQYSGRTWLKEICRLWHEYGLAPQY 314

Query: 250 LLYSLSEIKGLVRLRY-TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308
                  +     + +  TSH    +  ++K   +      +L    +S +  +LK++ +
Sbjct: 315 TRDDAGNVVSWTGIHWSGTSHATLCTLEILKTMREAG--CAHLVYGYESFAPHVLKTVGK 372

Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
             T     +           I    + I+GFP E  +  RA M   D +G      F  +
Sbjct: 373 GSTPKTNIRSFFWTLEA--GIRPVPNQIIGFPAEDFESIRANMRAWDDLGVLVKPHFA-T 429

Query: 369 PRLG 372
           P  G
Sbjct: 430 PYPG 433


>gi|238693260|sp|B4RX69|LIPA_ALTMD RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
          Length = 320

 Score = 53.0 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 34/262 (12%), Positives = 88/262 (33%), Gaps = 21/262 (8%)

Query: 115 EEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDY--------SVEDKFERLSIV 166
           +E ++  P+  +    +   R PE + + +  +     D+        ++    E  S  
Sbjct: 15  DEKVKHIPVTIIPTEKEEMLRKPEWI-KIKLPRTTEKIDHIKKTLRKNNLHSVCEEASCP 73

Query: 167 DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEIT 226
           +       G   F+ + + C + C FC V    G  +  S  +    A+ + +  +  + 
Sbjct: 74  NLAECFNHGTATFMILGDICTRRCPFCDV--AHGKPLPPSAEEPEKLAKTIAEMNLRYVV 131

Query: 227 LLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGD-LD 285
           +   +    R    DG    F D + ++ E      +       R   D  ++   + + 
Sbjct: 132 ITSVD----RDDLRDGGAQHFVDCINAIREHSPTTTIEVLVPDFRGRMDRALEIFKNGVP 187

Query: 286 VLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDD 345
            +  +    +     R+ +             ++ + ++  PD+   S  ++G   E ++
Sbjct: 188 DVFNHNLETI----PRLYRECRPGANYQWSLDLLKKFKAQHPDVMTKSGLMMGMGEENEE 243

Query: 346 DFRATMDLVDKIGYAQAFSFKY 367
             +  +D +           +Y
Sbjct: 244 -IQGVLDDLRAHDVDMLTLGQY 264


>gi|87123376|ref|ZP_01079227.1| hypothetical protein RS9917_05935 [Synechococcus sp. RS9917]
 gi|86169096|gb|EAQ70352.1| hypothetical protein RS9917_05935 [Synechococcus sp. RS9917]
          Length = 533

 Score = 53.0 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 48/234 (20%), Positives = 83/234 (35%), Gaps = 24/234 (10%)

Query: 174 RGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVN 233
                 + +   C + C FC+  Y      + SL   +  A +        + LLG +V 
Sbjct: 205 WPNIHMVEVVRSCPELCRFCLASYLTLPFRTPSLEDGLIPAVEQGLTATRRLGLLGASVT 264

Query: 234 AWRGKGLDGEKCTFSDLLYSLS-EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLH 292
                        F  LL  LS E    +RL  ++     ++  L             L 
Sbjct: 265 QH---------PQFEALLQWLSQERFDDLRLSVSSVRAATVTPELASTLA--RRGSKSLT 313

Query: 293 LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS-VRPDIAISSDFIVGFPGETDDDFRATM 351
           + ++SGSDR+ + +N++ +  E        +      + +    +VG P E +DD  AT 
Sbjct: 314 IAIESGSDRMRQLVNKKLSTAEIEAAARHAKEGGLSGLKLYG--MVGLPQEENDDVEATA 371

Query: 352 DLVDKIGYAQA------FSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLR 399
            L+ ++               + P+  TP         E  K  RL  L K+L+
Sbjct: 372 KLLLELKQHTPGLRLTLGVSTFVPKAHTP-FQWQGVRPEAEK--RLKLLAKRLK 422


>gi|75859056|ref|XP_868868.1| hypothetical protein AN9486.2 [Aspergillus nidulans FGSC A4]
 gi|74592053|sp|Q5AQE4|LIPA_EMENI RecName: Full=Lipoyl synthase, mitochondrial; AltName: Full=Lipoate
           synthase; Short=LS; Short=Lip-syn; AltName: Full=Lipoic
           acid synthase; Flags: Precursor
 gi|40747621|gb|EAA66777.1| hypothetical protein AN9486.2 [Aspergillus nidulans FGSC A4]
 gi|259482385|tpe|CBF76818.1| TPA: lipoic acid synthetase precursor (AFU_orthologue;
           AFUA_3G06560) [Aspergillus nidulans FGSC A4]
          Length = 413

 Score = 53.0 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/230 (13%), Positives = 80/230 (34%), Gaps = 12/230 (5%)

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQ-EGCDKFCTFCVVPYTR 199
           +R +   R ++     E+          G   K   TA + +  + C + C FC V  +R
Sbjct: 118 QRLKKDLRGLNLHTVCEEARCPNISDCWGGGDKAAATATIMLMGDTCTRGCRFCSVKTSR 177

Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
                    +  + A  +   G+  + L   +    R    DG    F++ +  + +   
Sbjct: 178 APP-PLDPHEPENTAEAISRWGLGYVVLTSVD----RDDLADGGARHFAETVIKIKQKAP 232

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDV-LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318
            + +   T         ++       + +  +    V++ +  +     RR T  +  ++
Sbjct: 233 NILVECLTGD-YAGDLEMVGVVARSGLDVYAHNVETVEALTPHVRD---RRATFQQSLRV 288

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
           ++  +  +P +   +  ++G  GET++     +  +  +        +Y 
Sbjct: 289 LEAAKKAKPSLITKTSLMLGL-GETEEQLWDALRQLRAVNVDVVTFGQYM 337


>gi|326795429|ref|YP_004313249.1| oxygen-independent coproporphyrinogen III oxidase [Marinomonas
           mediterranea MMB-1]
 gi|326546193|gb|ADZ91413.1| oxygen-independent coproporphyrinogen III oxidase [Marinomonas
           mediterranea MMB-1]
          Length = 456

 Score = 53.0 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/236 (13%), Positives = 82/236 (34%), Gaps = 18/236 (7%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQN---------VNAWR 236
           C   C +C         +++   +  +    L +       +L ++              
Sbjct: 57  CAHLCYYC----ACNKVVTKKYDKGAEYVELLAEEMRLRALMLDRDRKVTQLHLGGGTPT 112

Query: 237 GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQ 296
              +D  +  F  +  + + +K   +       PR++ +  +    +       + L +Q
Sbjct: 113 FLSVDNMRTLFKHVEENFNLVKDDSQDFSIEIDPREVDNAQLVLLKEFG--FNRVSLGIQ 170

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
                + K+++R  +     +++D +R+     +++ D I G P +T   F  T+D V +
Sbjct: 171 DFDPVVQKAIHREQSRELVAKVLDDVRTAGFK-SVNFDLIYGLPHQTTTSFMQTIDSVIE 229

Query: 357 IGYAQAFSFKYSPRL-GTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVG 411
           +   +   F Y+           +   D     E++  L++ +     +     +G
Sbjct: 230 LNPERISVFNYAHLPSRFAAQRRINDEDLPSADEKMSILKESINALMRAGY-RYIG 284


>gi|304407551|ref|ZP_07389203.1| Coproporphyrinogen dehydrogenase [Paenibacillus curdlanolyticus
           YK9]
 gi|304343502|gb|EFM09344.1| Coproporphyrinogen dehydrogenase [Paenibacillus curdlanolyticus
           YK9]
          Length = 517

 Score = 53.0 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/233 (16%), Positives = 82/233 (35%), Gaps = 19/233 (8%)

Query: 129 GPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188
           G        EL E     +  ++    +  +  +L+ +   Y  +  V+ ++ I   C  
Sbjct: 132 GIPAAQARRELQEHYLISQEKIELMERIVQR--QLTAIPDLYRIRDEVSIYIGIPF-CPT 188

Query: 189 FCTFCVVPY--TRGIEISRS------LSQVVDEARKLIDNGVCEITLL--GQNVNAWRGK 238
            C +C  P     G + S +        ++ +    L  N V   T+   G    +   +
Sbjct: 189 KCAYCTFPAYDINGRQGSVNGFLTGLHEEMREIGEWLKRNDVKITTIYYGGGTPTSITAE 248

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
            +D       ++  ++ +++ +         P  ++   +         +  + +  QS 
Sbjct: 249 EMDAMYSLMYEVFPNVDDVREIT---VEAGRPDTITPEKLAVMQK--WGVDRISINPQSY 303

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351
               L+ + R HT  E  +  +  R    D  I+ D I+G P E   +F  T+
Sbjct: 304 IQETLEVIGRHHTVEETIRKFELARECGMD-NINMDLIIGLPNEGLPEFEHTL 355


>gi|213647955|ref|ZP_03378008.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica
           serovar Typhi str. J185]
          Length = 424

 Score = 53.0 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 40/248 (16%), Positives = 87/248 (35%), Gaps = 20/248 (8%)

Query: 173 KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEI--TLLGQ 230
           +R ++ ++ I   C K C FC        +  +   Q +D   + I +         + Q
Sbjct: 50  ERPLSLYVHIPF-CHKLCYFCGCNKIVTRQQHK-ADQYLDALEQEIRHRAPLFADRHVSQ 107

Query: 231 NVNAWRGKGLDGEKCTFSDLLYSLSE-----IKGLVRLRYTTSHPRDMSDCLIKAHGDLD 285
            ++   G      K   S L+  L E         + +      PR++   ++       
Sbjct: 108 -LHWGGGTPTYLNKAQISRLMTLLRENFHFNTDAEISIEV---DPREIELDVLDHLRAEG 163

Query: 286 VLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS-DFIVGFPGETD 344
                L + VQ  +  + + +NR         +++  R +      ++ D I G P +T 
Sbjct: 164 --FNRLSMGVQDFNKEVQRLVNREQDEEFIFALLNHARDI--GFTSTNIDLIYGLPKQTP 219

Query: 345 DDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQV 403
           + F  T+  V ++   +   F Y+       +   ++  D     ++L  LQ+ +     
Sbjct: 220 ESFAFTLKRVTELNPDRLSVFNYAHLPTLFAAQRKIKDADLPSAQQKLDILQETIVSLTQ 279

Query: 404 SFNDACVG 411
           +     +G
Sbjct: 280 AGYQ-FIG 286


>gi|307721773|ref|YP_003892913.1| hypothetical protein Saut_1857 [Sulfurimonas autotrophica DSM
           16294]
 gi|306979866|gb|ADN09901.1| conserved hypothetical protein [Sulfurimonas autotrophica DSM
           16294]
          Length = 319

 Score = 53.0 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 34/92 (36%), Gaps = 2/92 (2%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           ++   +QS  D  L+ +NR H +   ++ I  I+S    + +    I G PGET +    
Sbjct: 163 WIEFGIQSVYDETLEKINRGHDSANVKEWI--IKSKEAGLNVCGHLIFGLPGETQEMMLE 220

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           T     + G              T  +N    
Sbjct: 221 TSKAAYEWGIDSVKYHPLYVVKRTALANEYNH 252


>gi|289427292|ref|ZP_06429008.1| radical SAM domain protein [Propionibacterium acnes J165]
 gi|289159761|gb|EFD07949.1| radical SAM domain protein [Propionibacterium acnes J165]
 gi|313764666|gb|EFS36030.1| radical SAM domain protein [Propionibacterium acnes HL013PA1]
 gi|313807310|gb|EFS45797.1| radical SAM domain protein [Propionibacterium acnes HL087PA2]
 gi|313815733|gb|EFS53447.1| radical SAM domain protein [Propionibacterium acnes HL059PA1]
 gi|313820118|gb|EFS57832.1| radical SAM domain protein [Propionibacterium acnes HL036PA1]
 gi|313823073|gb|EFS60787.1| radical SAM domain protein [Propionibacterium acnes HL036PA2]
 gi|314918385|gb|EFS82216.1| radical SAM domain protein [Propionibacterium acnes HL050PA1]
 gi|314919874|gb|EFS83705.1| radical SAM domain protein [Propionibacterium acnes HL050PA3]
 gi|314925346|gb|EFS89177.1| radical SAM domain protein [Propionibacterium acnes HL036PA3]
 gi|314955957|gb|EFT00355.1| radical SAM domain protein [Propionibacterium acnes HL027PA1]
 gi|314958441|gb|EFT02544.1| radical SAM domain protein [Propionibacterium acnes HL002PA1]
 gi|314960208|gb|EFT04310.1| radical SAM domain protein [Propionibacterium acnes HL002PA2]
 gi|314968155|gb|EFT12254.1| radical SAM domain protein [Propionibacterium acnes HL037PA1]
 gi|314978194|gb|EFT22288.1| radical SAM domain protein [Propionibacterium acnes HL072PA2]
 gi|314987658|gb|EFT31749.1| radical SAM domain protein [Propionibacterium acnes HL005PA2]
 gi|314990138|gb|EFT34229.1| radical SAM domain protein [Propionibacterium acnes HL005PA3]
 gi|315084525|gb|EFT56501.1| radical SAM domain protein [Propionibacterium acnes HL027PA2]
 gi|315085862|gb|EFT57838.1| radical SAM domain protein [Propionibacterium acnes HL002PA3]
 gi|315088721|gb|EFT60697.1| radical SAM domain protein [Propionibacterium acnes HL072PA1]
 gi|315098330|gb|EFT70306.1| radical SAM domain protein [Propionibacterium acnes HL059PA2]
 gi|315100975|gb|EFT72951.1| radical SAM domain protein [Propionibacterium acnes HL046PA1]
 gi|327332145|gb|EGE73882.1| radical SAM domain protein [Propionibacterium acnes HL096PA3]
 gi|327450988|gb|EGE97642.1| radical SAM domain protein [Propionibacterium acnes HL087PA3]
 gi|327453663|gb|EGF00318.1| radical SAM domain protein [Propionibacterium acnes HL083PA2]
 gi|328753019|gb|EGF66635.1| radical SAM domain protein [Propionibacterium acnes HL087PA1]
 gi|328753676|gb|EGF67292.1| radical SAM domain protein [Propionibacterium acnes HL020PA1]
 gi|328754993|gb|EGF68609.1| radical SAM domain protein [Propionibacterium acnes HL025PA2]
 gi|332675234|gb|AEE72050.1| putative Fe-S oxidoreductase family 2 [Propionibacterium acnes 266]
          Length = 650

 Score = 53.0 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 61/386 (15%), Positives = 113/386 (29%), Gaps = 54/386 (13%)

Query: 71  HIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGP 130
            +     E        IR+ K      G + L+V                  + +  +G 
Sbjct: 166 AVLGDGEEACLEISEIIRDWKKEGCPGGREGLLVRLAATGGIYVPCFYDVEYLDDGTIGK 225

Query: 131 QTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190
               RL            V+D D     K   + + +  + R       + I  GC + C
Sbjct: 226 VAPNRLEA--PYTVSKHTVMDLDEWQYPKRPIVPVAETVHERYS-----VEIFRGCTRGC 278

Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFSD 249
            FC           RS+  +       +   G+ E+ LL   +++     +       +D
Sbjct: 279 RFCQAGMITRPVRERSIDAIAQMVDGGLQATGLEEVGLLS--LSSADHSEISDITKGLAD 336

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
                      V L   ++     +  L             L    + GS+R+ + +N++
Sbjct: 337 RYE-----GTNVSLSLPSTRVDTFNIDLANELSRNGR-RSGLTFAPEGGSERMRRVINKK 390

Query: 310 HTAYEYRQIIDR-----IRSVRPDIAISSDFIVGFPGETDDDFRATMDLV---------- 354
            T  +  + +        R ++        F+ G P ETD+D     D+           
Sbjct: 391 VTEEDLIRTVATAFGNGWRQIK------LYFMCGLPTETDEDVLGIHDMASHVVAAGRAA 444

Query: 355 ---DKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLRE-------QQVS 404
                I         + P+  TP      Q   +    RL  L+  +R          + 
Sbjct: 445 AGRKDIRCT-ISIGGFVPKPHTP-FQWAAQASADEVDHRLSVLRDSIRADRQFGRSIGMR 502

Query: 405 FNDACVGQIIEVLIEKHGKEKGKLVG 430
           ++D   G     +IE       + VG
Sbjct: 503 YHDGRPG-----IIEGLLSRGDRRVG 523


>gi|160934232|ref|ZP_02081619.1| hypothetical protein CLOLEP_03103 [Clostridium leptum DSM 753]
 gi|156866905|gb|EDO60277.1| hypothetical protein CLOLEP_03103 [Clostridium leptum DSM 753]
          Length = 492

 Score = 53.0 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 72/197 (36%), Gaps = 24/197 (12%)

Query: 171 NRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQ 230
           +RK   + +++I   C   C++C         +S+++ +      + +     E+    Q
Sbjct: 162 SRKESYSLYVSIPF-CPTRCSYCS-------FVSQTIERAHKMIPEYVARLCEELEKTAQ 213

Query: 231 ---NVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMS----------DCL 277
               +N        G     +     +  +   +R  +  S  R+ +             
Sbjct: 214 IAHELNLRLESVYIGGGTPTTLTWEQMELLLRTIRRNFDFSCCREFTVEAGRPDTITPEK 273

Query: 278 IKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIV 337
           +KA       +  + +  Q+ +D +L+ + R+H+A +        R       I+ D I 
Sbjct: 274 LKAMKRYG--VDRISINPQTLNDGVLELIGRKHSARQTIDAFKLARKEGFH-HINMDLIA 330

Query: 338 GFPGETDDDFRATMDLV 354
           G PG++   F+ T+  +
Sbjct: 331 GLPGDSLTSFQNTIQGI 347


>gi|116753522|ref|YP_842640.1| radical SAM domain-containing protein [Methanosaeta thermophila PT]
 gi|116664973|gb|ABK14000.1| Radical SAM domain protein [Methanosaeta thermophila PT]
          Length = 454

 Score = 53.0 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/243 (12%), Positives = 64/243 (26%), Gaps = 33/243 (13%)

Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204
           FG+R+    +        +  +   +  K  +   L    GC   C FC  P        
Sbjct: 133 FGRRIEKVVHPP-----LIEYLSTPFGLKLNIYGILFTTRGCGVGCKFCQTPCFAPKPTP 187

Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264
             L  +         N +  + +  +N  A R                 + EI     + 
Sbjct: 188 IPLESIERVVNYYKKNNINVVIIEDENFGANR------------RHADRVVEILDEYDMV 235

Query: 265 YTTSHPRDMSDCLIKAHGDLDV--------------LMPYLHLPVQSGSDRILKSMNRRH 310
           +      D     I     +                      + +++     L  + +R 
Sbjct: 236 WGCMARADYLREKIDEWVTMRRRVARRDGSARRMVSGFAGAAIGIENLHQERLDDIKKRE 295

Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370
              +  + I  ++S    +     +++GF  +T       +  V  +          +P 
Sbjct: 296 GVEDIVETIKLLQS--HGMGTVGYYMIGFEDDTVRSIDEDVKRVADLKLDITQICVLTPL 353

Query: 371 LGT 373
             T
Sbjct: 354 PQT 356


>gi|317056337|ref|YP_004104804.1| Coproporphyrinogen dehydrogenase [Ruminococcus albus 7]
 gi|315448606|gb|ADU22170.1| Coproporphyrinogen dehydrogenase [Ruminococcus albus 7]
          Length = 489

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 39/227 (17%), Positives = 83/227 (36%), Gaps = 28/227 (12%)

Query: 173 KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEIT---LLG 229
           K+  + +++I   C   C++C         IS++L        + ID    EI    L+ 
Sbjct: 163 KKSFSLYVSIPF-CPTRCSYCS-------FISQTLDSGRKLIPEYIDKMCREIRHTALIT 214

Query: 230 QNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD----------MSDCLIK 279
           + +         G     S     L+ +   +   +  S  R+          +++  ++
Sbjct: 215 KRLGLKLDTVYFGGGTPTSIEASQLAALMKCIEHSFDMSSVREYTVEAGRPDTITEEKLR 274

Query: 280 AHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGF 339
                      + +  QS +  +L+++ R H+  ++    D  R       I++D I G 
Sbjct: 275 TIKA--NGCTRISINPQSLNPDVLEAIGRSHSVDQFYDSYDLARK-IGFSCINTDVIAGL 331

Query: 340 PGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           P +T + F  T+D +  +          S +     + +L Q D+ V
Sbjct: 332 PEDTVESFADTIDKLLGLSPENFTVHTLSIKR----AALLNQGDKEV 374


>gi|288799680|ref|ZP_06405139.1| radical SAM domain protein [Prevotella sp. oral taxon 299 str.
           F0039]
 gi|288332928|gb|EFC71407.1| radical SAM domain protein [Prevotella sp. oral taxon 299 str.
           F0039]
          Length = 634

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 50/310 (16%), Positives = 96/310 (30%), Gaps = 64/310 (20%)

Query: 127 VVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNR-------KRGVTAF 179
           +           LL+       VV+  +      E  ++ D  Y R        + + A+
Sbjct: 226 IEEESNKMHAQRLLQEVDGKYTVVNPPFPTMTTAELDAMFDLPYTRLPHPKYKNKRIPAY 285

Query: 180 ------LTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLI----------DNGV 222
                 + I +GC   C+FC +   +G  +  RS   ++ E +++I          D G 
Sbjct: 286 EMIKFSVNIHQGCFGGCSFCTISAHQGKFVTCRSKESIIKEVKQIISMPDFKGYLSDLGG 345

Query: 223 CEITLLG-----QNVNAWR----------GKGLDGEKCTFSDLLYSLSEIKGLVRLRY-- 265
               + G     QN+                 L+ +     ++  ++  + GL +     
Sbjct: 346 PSANMYGMAGKNQNICEKCKRPSCISPKVCTNLNTDHTKILEIYRAVDALPGLKKSFIGS 405

Query: 266 ---------------TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310
                          T +  ++    LI        +   L +  +  SD +L  M +  
Sbjct: 406 GVRYDLLLHKSKDDKTNAAAKEYIHELI-----TKHVSGRLKVAPEHTSDDVLGLMRKPS 460

Query: 311 TAYEY--RQIIDRI-RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
               Y  ++I DRI R       I   FI   PG   +D          + +       +
Sbjct: 461 FEQFYEFKKIFDRINREENLKQQIIPYFISSHPGCKPEDMADLAVKTKNLDFKLEQIQDF 520

Query: 368 SPRLGTPGSN 377
           +P   T  + 
Sbjct: 521 TPTPMTVSTE 530


>gi|239618120|ref|YP_002941442.1| hypothetical protein Kole_1752 [Kosmotoga olearia TBF 19.5.1]
 gi|239506951|gb|ACR80438.1| conserved hypothetical protein [Kosmotoga olearia TBF 19.5.1]
          Length = 305

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 33/198 (16%), Positives = 71/198 (35%), Gaps = 14/198 (7%)

Query: 188 KFCTFCVVPYTRGIEI----SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
             C +C  P   G  +    S    Q+++   KL   G+ +     Q  +         +
Sbjct: 42  GGCIYCD-PTGSGFSVDGQKSIR-EQMLERIEKLRAKGIKKYMAYFQANSNTYAPVKKLK 99

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
           +   S +   +  +    R         + +  L++++ +   L   +   +Q+ +   L
Sbjct: 100 ELYDSAISDDIVILDVSTRPDL----ASEETLELLESYKE--KLDVIIEFGLQTANFWTL 153

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           K +NR HT  E+   +  IR+ +  + + +  IV  P +T  D   T  ++  +      
Sbjct: 154 KKLNRGHTLAEFIDAV--IRAKKHGLEVVAHVIVNLPWDTMTDVIETAKILSALSVDGVK 211

Query: 364 SFKYSPRLGTPGSNMLEQ 381
                   GT    M ++
Sbjct: 212 IHSLYVVEGTALGKMYKK 229


>gi|157372576|ref|YP_001480565.1| putative radical SAM protein [Serratia proteamaculans 568]
 gi|157324340|gb|ABV43437.1| conserved hypothetical radical SAM protein [Serratia proteamaculans
           568]
          Length = 312

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 41/125 (32%), Gaps = 23/125 (18%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +L L +Q+  D+ LK +NR H    Y+      R     + + S  IVG PGET  D  +
Sbjct: 141 WLELGLQTAHDKTLKRINRGHDFSCYQHTARLARER--GLKVCSHLIVGLPGETAADHLS 198

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGT---------------------PGSNMLEQVDENVKA 388
           T+  V   G             G+                         M+    + V  
Sbjct: 199 TLQQVVDSGVDGIKLHPLHIVTGSTLARAWQAGRLPELALEEYACSAGEMIRHTPKEVVY 258

Query: 389 ERLLC 393
            R+  
Sbjct: 259 HRISA 263


>gi|91212636|ref|YP_542622.1| hypothetical protein UTI89_C3647 [Escherichia coli UTI89]
 gi|91074210|gb|ABE09091.1| hypothetical protein UTI89_C3647 [Escherichia coli UTI89]
          Length = 288

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 43/237 (18%), Positives = 75/237 (31%), Gaps = 36/237 (15%)

Query: 181 TIQEGCDKFCTFCVV-PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
           TI  G    CTFC V  +    +  RS+++ +     L++     +              
Sbjct: 18  TIGRG---GCTFCNVASFADEAQQHRSIAEQLAHQANLVNRAKRYLAYF-----QAYTST 69

Query: 240 LDGEKCTFSDLLYSLSE--IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQS 297
               +   S    ++S+  I GL  +        D    L+  + D    + +L L +Q+
Sbjct: 70  FAEVQVLRSMYQQAVSQANIVGLC-VGTRPDCVPDAVLDLLCEYKDQGYEV-WLELGLQT 127

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
             D+ L  +NR H    Y++     R     + + S  IVG PGE   +   T++ V + 
Sbjct: 128 AHDKTLHRINRGHDFACYQRTTQLARER--GLKVCSHLIVGLPGEGQAECLQTLERVVET 185

Query: 358 GYAQAFSFKYSPRLG---------------------TPGSNMLEQVDENVKAERLLC 393
           G             G                          M+      V   R+  
Sbjct: 186 GVDGIKLHPLHIVKGSIMAKAWEAGRLNGIELEDYTLTAGEMIRHTPPEVIYHRISA 242


>gi|77918738|ref|YP_356553.1| putative Fe-S oxidoreductase [Pelobacter carbinolicus DSM 2380]
 gi|77544821|gb|ABA88383.1| putative Fe-S oxidoreductase [Pelobacter carbinolicus DSM 2380]
          Length = 425

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 49/296 (16%), Positives = 91/296 (30%), Gaps = 53/296 (17%)

Query: 85  GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
             I+   +   +   DL++VV G +  A+   I+        +VG          L  A 
Sbjct: 73  NEIKRTIDLSKQIKPDLIIVVGGGLITAQPTLIMENIGADYAIVGQGEITICE--LAEAL 130

Query: 145 FGKRVV--------------------------DTDYSVE-DKFERLSIVDGGYNRKRGVT 177
            GK+ +                          DT  + + D F    + +   N      
Sbjct: 131 EGKKPIRDVAGIVYFENQALVCNENRPEIRELDTVTNPDYDIFPYTQVPNDPININGDFK 190

Query: 178 AFLTI--QEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW 235
             + I     C   CTFC  P        RS+  +  E   L+     E  L+   + A 
Sbjct: 191 RTVNITASRSCPYNCTFCYHPSGTT-YRQRSIENIFREIDFLLSKYDIEHLLIIDELFAI 249

Query: 236 RGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPV 295
                  ++   S+   ++++      +         + + L+    +       +   +
Sbjct: 250 -------DENRVSEFCEAIAKYDVTFSV---QLRVDGIDENLLLKLKNAG--CTSISYGL 297

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351
           +S  + ILKSM +     +  + +   R +     I   FI G       D   TM
Sbjct: 298 ESADNSILKSMKKGTDISQIEKALSLTRKI--GFFIQGYFIFG-------DIEETM 344


>gi|328543933|ref|YP_004304042.1| Lipoyl synthase 1 [polymorphum gilvum SL003B-26A1]
 gi|326413677|gb|ADZ70740.1| Lipoyl synthase 1 [Polymorphum gilvum SL003B-26A1]
          Length = 324

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/194 (13%), Positives = 68/194 (35%), Gaps = 11/194 (5%)

Query: 174 RGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVN 233
           +   +F+ + + C + C FC V       +    ++    AR +   G+  + +   +  
Sbjct: 79  KKHASFMILGDTCTRACAFCNVRTGMPGPV--DPNEPEGIARAVASMGLDHVVITSVD-- 134

Query: 234 AWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHL 293
             R    DG    F++++ ++        +   T         L         +  +   
Sbjct: 135 --RDDLEDGGARHFAEVIAAIRAGAPKTTIEVLTPDFLRKEGALEIVVAAKPDVFNH--- 189

Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
            +++   + LK +      +   +++ R++ + P +   S  +VG  GE  ++    MD 
Sbjct: 190 NLETVPSKYLK-VRPGARYFHSIRLLQRVKELDPTMFTKSGIMVGL-GEERNEVLQLMDD 247

Query: 354 VDKIGYAQAFSFKY 367
           +           +Y
Sbjct: 248 LRTADVDFLTIGQY 261


>gi|314963014|gb|EFT07114.1| radical SAM domain protein [Propionibacterium acnes HL082PA1]
          Length = 650

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 61/386 (15%), Positives = 113/386 (29%), Gaps = 54/386 (13%)

Query: 71  HIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGP 130
            +     E        IR+ K      G + L+V                  + +  +G 
Sbjct: 166 AVLGDGEEACLEISEIIRDWKKEGCPGGREGLLVRLAATGGIYVPCFYDVEYLDDGTIGK 225

Query: 131 QTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190
               RL            V+D D     K   + + +  + R       + I  GC + C
Sbjct: 226 VAPNRLEA--PYTVSKHTVMDLDEWQYPKRPIVPVAETVHERYS-----VEIFRGCTRGC 278

Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFSD 249
            FC           RS+  +       +   G+ E+ LL   +++     +       +D
Sbjct: 279 RFCQAGMITRPVRERSIDAIAQMVDGGLQATGLEEVGLLS--LSSADHSEISDITKGLAD 336

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
                      V L   ++     +  L             L    + GS+R+ + +N++
Sbjct: 337 RYE-----GTNVSLSLPSTRVDTFNIDLANELSRNGR-RSGLTFAPEGGSERMRRVINKK 390

Query: 310 HTAYEYRQIIDR-----IRSVRPDIAISSDFIVGFPGETDDDFRATMDLV---------- 354
            T  +  + +        R ++        F+ G P ETD+D     D+           
Sbjct: 391 VTEEDLIRTVATAFGNGWRQIK------LYFMCGLPTETDEDVLGIHDMASHVVAAGRAA 444

Query: 355 ---DKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLRE-------QQVS 404
                I         + P+  TP      Q   +    RL  L+  +R          + 
Sbjct: 445 AGRKDIRCT-ISIGGFVPKPHTP-FQWAAQASADEVDHRLSVLRDSIRADRQFGRSIGMR 502

Query: 405 FNDACVGQIIEVLIEKHGKEKGKLVG 430
           ++D   G     +IE       + VG
Sbjct: 503 YHDGRPG-----IIEGLLSRGDRRVG 523


>gi|313682074|ref|YP_004059812.1| radical sam domain protein [Sulfuricurvum kujiense DSM 16994]
 gi|313154934|gb|ADR33612.1| Radical SAM domain protein [Sulfuricurvum kujiense DSM 16994]
          Length = 579

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 41/276 (14%), Positives = 91/276 (32%), Gaps = 52/276 (18%)

Query: 153 DYSVEDKFERLSIVD--GGYNRKRG-------VTAFLTIQEGCDKFCTFCVVPYTRGI-E 202
           D S  D    L        Y+R +G       +   +   +GC   C FC +   +G   
Sbjct: 267 DESEMDAVSSLPFTRELHPYHRPKGSVKCLETIKFSIMTHQGCWGECNFCAIGVHQGRTI 326

Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLG----------------------------QNVNA 234
            +RS   ++ EA +  +    +  +                               + + 
Sbjct: 327 RTRSEESILKEATQFTEYKDFKGIISDVGGPTANMYGYECNKKLKHGTCDHQRCVDDTHL 386

Query: 235 WRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMS-------DCLIKAHGDLDVL 287
            +   +D       +LL  L E++G+ +    +    D+           +K       +
Sbjct: 387 CKSMKVD--HTRVINLLRRLREVRGVKKAFVASGVRYDLINEDKRQGYEYLKEMVRH-HI 443

Query: 288 MPYLHLPVQSGSDRILKSMNRRH--TAYEYRQIIDRI-RSVRPDIAISSDFIVGFPGETD 344
              + +  +  S+ +L  MN+    T  +++++ D++ R       ++   I   PG T+
Sbjct: 444 SGQMKVAPEHTSEHVLHLMNKPGKQTLVDFKKLYDKLNREEGKKQFLTYYLIAAHPGCTE 503

Query: 345 DDFRATMDLV-DKIGYAQAFSFKYSPRLGTPGSNML 379
            D         +++      +  ++P  GT  + M 
Sbjct: 504 KDMHDLKRFTSEELKMNPEQAQVFTPTPGTYSAVMY 539


>gi|300938127|ref|ZP_07152901.1| radical SAM protein, TIGR01212 family [Escherichia coli MS 21-1]
 gi|331684858|ref|ZP_08385450.1| radical SAM protein, family [Escherichia coli H299]
 gi|300456890|gb|EFK20383.1| radical SAM protein, TIGR01212 family [Escherichia coli MS 21-1]
 gi|331078473|gb|EGI49679.1| radical SAM protein, family [Escherichia coli H299]
          Length = 309

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 43/237 (18%), Positives = 75/237 (31%), Gaps = 36/237 (15%)

Query: 181 TIQEGCDKFCTFCVV-PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
           TI  G    CTFC V  +    +  RS+++ +     L++     +              
Sbjct: 39  TIGRG---GCTFCNVASFADEAQQHRSIAEQLAHQANLVNRAKRYLAYF-----QAYTST 90

Query: 240 LDGEKCTFSDLLYSLSE--IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQS 297
               +   S    ++S+  I GL  +        D    L+  + D    + +L L +Q+
Sbjct: 91  FAEVQVLRSMYQQAVSQANIVGLC-VGTRPDCVPDAVLDLLCEYKDQGYEV-WLELGLQT 148

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
             D+ L  +NR H    Y++     R     + + S  IVG PGE   +   T++ V + 
Sbjct: 149 AHDKTLHRINRGHDFACYQRTTQLARER--GLKVCSHLIVGLPGEGQAECLQTLERVVET 206

Query: 358 GYAQAFSFKYSPRLG---------------------TPGSNMLEQVDENVKAERLLC 393
           G             G                          M+      V   R+  
Sbjct: 207 GVDGIKLHPLHIVKGSIMAKAWEAGRLNGIELEDYTLTAGEMIRHTPPEVIYHRISA 263


>gi|85858532|ref|YP_460734.1| Fe-S oxidoreductase [Syntrophus aciditrophicus SB]
 gi|85721623|gb|ABC76566.1| Fe-S oxidoreductase [Syntrophus aciditrophicus SB]
          Length = 563

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/178 (16%), Positives = 65/178 (36%), Gaps = 17/178 (9%)

Query: 182 IQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD 241
           +  GC + C FC   +       R +  +     + I  G  +I LLG  V+        
Sbjct: 255 VSRGCQRGCRFCAAGFVYRPLRFRRMEALETSFIRGIALG-KKIGLLGTAVS-------- 305

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
            +    +DL   +    G   L   +     ++  +     +    +  + L  ++G+ R
Sbjct: 306 -DHPQLADLCRHVLGRGGSFSL--GSLRTDRVNREMAALLRESG--VETVALAPEAGTQR 360

Query: 302 ILKSMNRRHTAYEYRQIIDRI-RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           +   +++  +       ++ + +     I +   F++G P ET+ D    + L  +I 
Sbjct: 361 LRDVLHKGISEAHIFHAVECLVKERIRQIRLY--FMIGLPTETEADIEGIIVLTRRIR 416


>gi|313818356|gb|EFS56070.1| radical SAM domain protein [Propionibacterium acnes HL046PA2]
          Length = 650

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 61/386 (15%), Positives = 113/386 (29%), Gaps = 54/386 (13%)

Query: 71  HIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGP 130
            +     E        IR+ K      G + L+V                  + +  +G 
Sbjct: 166 AVLGDGEEACLEISEIIRDWKKEGCPGGREGLLVRLAATGGIYVPCFYDVEYLDDGTIGK 225

Query: 131 QTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190
               RL            V+D D     K   + + +  + R       + I  GC + C
Sbjct: 226 VAPNRLEA--PYTVSKHTVMDLDEWQYPKRPIVPVAETVHERYS-----VEIFRGCTRGC 278

Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFSD 249
            FC           RS+  +       +   G+ E+ LL   +++     +       +D
Sbjct: 279 RFCQAGMITRPVRERSIDAIAQMVDGGLQATGLEEVGLLS--LSSADHSEISDITKGLAD 336

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
                      V L   ++     +  L             L    + GS+R+ + +N++
Sbjct: 337 RYE-----GTNVSLSLPSTRVDTFNIDLANELSRNGR-RSGLTFAPEGGSERMRRVINKK 390

Query: 310 HTAYEYRQIIDR-----IRSVRPDIAISSDFIVGFPGETDDDFRATMDLV---------- 354
            T  +  + +        R ++        F+ G P ETD+D     D+           
Sbjct: 391 VTEEDLIRTVATAFGNGWRQIK------LYFMCGLPTETDEDVLGIHDMASHVVAAGRAA 444

Query: 355 ---DKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLRE-------QQVS 404
                I         + P+  TP      Q   +    RL  L+  +R          + 
Sbjct: 445 AGRKDIRCT-ISIGGFVPKPHTP-FQWAAQASADEVDHRLSVLRDSIRADRQFGRSIGMR 502

Query: 405 FNDACVGQIIEVLIEKHGKEKGKLVG 430
           ++D   G     +IE       + VG
Sbjct: 503 YHDGRPG-----IIEGLLSRGDRRVG 523


>gi|313142922|ref|ZP_07805115.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818]
 gi|313127953|gb|EFR45570.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818]
          Length = 317

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/111 (19%), Positives = 48/111 (43%), Gaps = 4/111 (3%)

Query: 273 MSDCLIKAHGDLDVLMP--YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330
           + D L++  G+        +L   +QS  D+ L+  NR H+    +++ ++ R+    + 
Sbjct: 142 VEDRLLELLGEYVKNGKEIWLEYGIQSVYDKTLELTNRAHSIAGAKEMFEKTRAK--GVK 199

Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           + +  I G P ET +    ++D V + G             GT  + + ++
Sbjct: 200 VCAHLIYGLPEETPEMMLHSLDCVLEWGINGIKIHPLYVVNGTRLAKLYKE 250


>gi|313890049|ref|ZP_07823684.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Streptococcus pseudoporcinus SPIN 20026]
 gi|313121410|gb|EFR44514.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Streptococcus pseudoporcinus SPIN 20026]
          Length = 376

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 39/200 (19%), Positives = 70/200 (35%), Gaps = 17/200 (8%)

Query: 173 KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS--LSQVVDEARKLIDNGVCEITLLGQ 230
           K+  +A++ I   C + C +C               L  ++ E R      +  + + G 
Sbjct: 3   KKPSSAYVHIPF-CTQICYYCDFSKVFIKNQPVDAYLQALIAEFRSYQIKHLKTLYIGGG 61

Query: 231 NVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPR--DMSDCLIKAHGDLDVLM 288
              A   + LD      ++L   L     L  L   T      D+    I         +
Sbjct: 62  TPTAISAQQLD---YLLTELTRDLD----LANLEEFTIEANPGDLDAEKIAVLQKS--AV 112

Query: 289 PYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFR 348
             + L VQ+ +D+ LK + R H   +  + ID +++      IS D I   PG+T +  +
Sbjct: 113 NRVSLGVQTFNDKHLKQIGRSHNEAQIYETIDSLKAAGFH-NISIDLIYALPGQTLEQVK 171

Query: 349 ATMDLVDKIGYAQAFSFKYS 368
             +     +         YS
Sbjct: 172 ENVA--KAVALDIPHLSLYS 189


>gi|299140610|ref|ZP_07033748.1| radical SAM domain protein [Prevotella oris C735]
 gi|298577576|gb|EFI49444.1| radical SAM domain protein [Prevotella oris C735]
          Length = 684

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 53/325 (16%), Positives = 101/325 (31%), Gaps = 69/325 (21%)

Query: 108 CVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVD 167
           C+   + E    R      +           LL++      VV+  Y      E  +I D
Sbjct: 232 CLQNKKAEAENYRH-----IEEESNKIHAQRLLQQVGNMYAVVNPPYPTMATEELDAIFD 286

Query: 168 GGYNRKRGVT-------AFLTI------QEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDE 213
             Y R            A+  I       +GC   C FC +   +G  +  RS   +V+E
Sbjct: 287 LPYTRLPHPKYKGKKLPAYEMIKFSINMHQGCFGGCAFCTISAHQGKFVACRSKKSIVNE 346

Query: 214 ARKLIDN----------GVCEITLLGQN---------------VNAWRGKGLDGEKCTFS 248
           A+K+             G     + G +               +N      LD +     
Sbjct: 347 AKKITQMPDFKGYLSDLGGPSANMYGMHGRNLKACERCKRPSCINPQICPNLDTDHTKLL 406

Query: 249 DLLYSLSEIKGLVRLRYT-----------------TSHPRDMSDCLIKAHGDLDVLMPYL 291
           D+ +++  + G+ +                      +  R  +  LI+     + +   L
Sbjct: 407 DIYHAVDALPGIKKSFIGSGVRYDLLLHKGKDEKANASTRQYTRELIE-----NHVSGRL 461

Query: 292 HLPVQSGSDRILKSMNRRHTAYEY--RQIIDRI-RSVRPDIAISSDFIVGFPGETDDDFR 348
            +  +   + +LK M +   +  Y  ++I D I +       I   FI   PG  ++D  
Sbjct: 462 KIAPEHTQESVLKLMRKPSFSQFYEFKRIFDHINKEAGLKQQIIPYFISSHPGCHEEDMA 521

Query: 349 ATMDLVDKIGYAQAFSFKYSPRLGT 373
               +   + +       ++P   T
Sbjct: 522 ELAVITKDLDFHLEQVQDFTPTPMT 546


>gi|283788147|ref|YP_003368012.1| radical SAM superfamily protein [Citrobacter rodentium ICC168]
 gi|282951601|emb|CBG91301.1| radical SAM superfamily protein [Citrobacter rodentium ICC168]
          Length = 305

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 43/234 (18%), Positives = 79/234 (33%), Gaps = 33/234 (14%)

Query: 181 TIQEGCDKFCTFCVV-PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
           TI  G    CTFC V  +    +  RS+++ +     L++     +              
Sbjct: 39  TIGRG---GCTFCNVASFADEAQQHRSIAEQLAHQAHLVNRAKRYLAYF-----QAYTST 90

Query: 240 LDGEKCTFSDLLYSLSE--IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQS 297
               +   +    ++S+  I GL  +        +    L+  + D    + +L L +Q+
Sbjct: 91  FAEVQVLRAMYQQAVSQASIVGLC-VGTRPDCVPEAVLDLLCEYKDQGYEV-WLELGLQT 148

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
             D+ L  +NR H    Y++     R     + + S  IVG PGE   +   T++ V + 
Sbjct: 149 AHDKTLHRINRGHDFACYQRTTRLARER--GLKVCSHLIVGLPGEGQSECLQTLERVVET 206

Query: 358 GYA--QAFSFKYSPR---------------LGTPGS-NMLEQVDENVKAERLLC 393
           G    +    K S                   T  +  M+      V   R+  
Sbjct: 207 GVDGIKLHIVKGSIMAKAWEAGRLNGIALDEYTVAAGEMIRHTPPEVIYHRISA 260


>gi|220905338|ref|YP_002480650.1| lipoyl synthase [Desulfovibrio desulfuricans subsp. desulfuricans
           str. ATCC 27774]
 gi|219869637|gb|ACL49972.1| lipoic acid synthetase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 299

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 33/198 (16%), Positives = 63/198 (31%), Gaps = 19/198 (9%)

Query: 175 GVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA 234
           G   FL + E C + C FC +   +    S    +    A+     G+  I +       
Sbjct: 66  GTATFLILGETCTRNCRFCNIHPGQTAAPS--PDEPERVAKAARTLGLRHIVITSVT--- 120

Query: 235 WRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY---L 291
            R    DG    F+  + ++        +       +     L         ++ +    
Sbjct: 121 -RDDLEDGGAGHFARTITAVRMALPQSSIEVLIPDFQGNEQALRTVMDAAPHVINHNVET 179

Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351
           H  + S           R+   +  +++ R+ +        S  +VG  GETDD  R  +
Sbjct: 180 HPALYSRVRPQ-----ARY--EQSLELLRRVHAA--GGTAKSGLMVGL-GETDDQVREVI 229

Query: 352 DLVDKIGYAQAFSFKYSP 369
             +   G +     +Y P
Sbjct: 230 RDLHAAGCSIITIGQYLP 247


>gi|227488481|ref|ZP_03918797.1| lipoyl synthase [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227091559|gb|EEI26871.1| lipoyl synthase [Corynebacterium glucuronolyticum ATCC 51867]
          Length = 343

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 36/216 (16%), Positives = 68/216 (31%), Gaps = 18/216 (8%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC +    G        +    A  + + G+   T+ G      R    D    
Sbjct: 77  CSRRCDFCQI--ASGKPDPLDRDEPRRVAESVREMGLNYATITGVT----RDDLDDEGAW 130

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
            +++++  + E+     +   T       D L         +  +    V     RI K 
Sbjct: 131 LYAEVVRKIHELNPHTGVENLTPDFSGKPDLLRIVFEARPEVFAHNVETV----PRIFKR 186

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           +           +I +       +   S+ I+G  GET ++ R  +D +           
Sbjct: 187 IRPAFRYDRSLDVIQQAHDY--GLVTKSNLILGM-GETPEEIREALDDLRSAHCDIITIT 243

Query: 366 KYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQ 401
           +Y  R G         +D  VK E  +   +  +E 
Sbjct: 244 QYL-RPGLR----YHPIDRWVKPEEFVEHAEYAKEI 274


>gi|169839951|ref|ZP_02873139.1| tRNA thiotransferase [candidate division TM7 single-cell isolate
           TM7a]
          Length = 34

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/34 (55%), Positives = 29/34 (85%)

Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
            +++D IVGFPGETD+DF+ TMD+V+++G+  AF
Sbjct: 1   GLTTDIIVGFPGETDEDFQDTMDVVNEVGFENAF 34


>gi|330992708|ref|ZP_08316652.1| Putative methyltransferase [Gluconacetobacter sp. SXCC-1]
 gi|329760186|gb|EGG76686.1| Putative methyltransferase [Gluconacetobacter sp. SXCC-1]
          Length = 526

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 40/259 (15%), Positives = 83/259 (32%), Gaps = 21/259 (8%)

Query: 124 VNVVVGPQTYYRLPELLERARFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLT 181
            +  V  +    + + +   R G R  V +      D  +            + +   + 
Sbjct: 111 ADFQVLGEAEGIMDDFIAAWRGGARRGVFEAPMGKTDVTKSPLPRFDLLKLDQYLHVGIQ 170

Query: 182 IQEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDNGVC-EITLLGQNVNAWRGKG 239
              GC   C FC +    G    +++ +QV+ E   L   G    +  +  N+       
Sbjct: 171 FSRGCPFSCEFCDIIELYGRVPRTKTNAQVMAELDALYALGYRGHVDFVDDNLI------ 224

Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM----SDCLIKAHGDLDVLMPYLHLPV 295
             G K      L  L   +   +  +  S    +       L+++    +     + + +
Sbjct: 225 --GNKKALKKFLPDLKRWQEEKKFPFEFSTEASINLADDPDLLRSLSQTNFFA--IFVGI 280

Query: 296 QSGSDRILKSMNRR-HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           +S     L  M ++ +T    +Q I+ I      I +++ FIVGF  E     +  +D +
Sbjct: 281 ESPDTDSLVLMQKKQNTRRSLQQSIETIHRA--GIFVNAGFIVGFDSEKGSVAKGMIDCI 338

Query: 355 DKIGYAQAFSFKYSPRLGT 373
           +                 T
Sbjct: 339 EDTSIPVCMVGLLYALPTT 357


>gi|291550340|emb|CBL26602.1| Fe-S oxidoreductase [Ruminococcus torques L2-14]
          Length = 621

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 41/267 (15%), Positives = 79/267 (29%), Gaps = 29/267 (10%)

Query: 159 KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLI 218
            +    +V      +  V   L IQ GC + C FC           R++ ++   A  ++
Sbjct: 244 PYPMKPVVPFIKVTQDRVV--LEIQRGCIRGCRFCQAGMLYRPVRERNVERLKQYAHDML 301

Query: 219 DNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL-VRLRYTTSHPRDMSDCL 277
            N        G    +               + Y + E K   + +   +      S  +
Sbjct: 302 QN-------TGHEEISLSSLSSSDYSELKELVTYLIDEFKNKGINISLPSLRIDAFSLDV 354

Query: 278 IKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIV 337
           +    D+      L    ++GS R+   +N+  T                   +   F++
Sbjct: 355 MSKVQDIRK--SSLTFAPEAGSQRMRDVINKGLTEEVILNGAGEAFEGGWT-KVKLYFML 411

Query: 338 GFPGETDDDFRATMDLVD-------KIGYAQAF--------SFKYSPRLGTPGSNMLEQV 382
           G P ET++D +    L +       +I   Q          S  + P+  TP        
Sbjct: 412 GLPTETEEDMKEIAHLAEKVARRYYEIPKDQRHGKCQITASSSFFVPKPFTP-FQWAPMC 470

Query: 383 DENVKAERLLCLQKKLREQQVSFNDAC 409
                  R   +  + +EQ    +   
Sbjct: 471 KAEEYMRRAHLVNDEFKEQLNRKSLKY 497


>gi|255320490|ref|ZP_05361671.1| lipoyl synthase [Acinetobacter radioresistens SK82]
 gi|255302462|gb|EET81698.1| lipoyl synthase [Acinetobacter radioresistens SK82]
          Length = 327

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/207 (14%), Positives = 67/207 (32%), Gaps = 10/207 (4%)

Query: 161 ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN 220
           E  +  +       G   F+ + + C + C FC V    G   S   ++    A  + + 
Sbjct: 66  EEAACPNLPECFGSGTATFMIMGDICTRRCPFCDV--AHGRPNSLDPAEPRHLAETVANL 123

Query: 221 GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKA 280
            +  + +   +    R    DG    F D +  + +     R+       R   D  +  
Sbjct: 124 NLSYVVITSVD----RDDLKDGGAQHFVDCIQEIRKCCPNTRIEILVPDFRGRLDLALSI 179

Query: 281 HGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFP 340
                   P +         R+ +++           ++ + +++ P+I      +VG  
Sbjct: 180 LSQSP---PDVFNHNIETVPRLYRALRPGSDYQHSLNLLKKFKTLCPEIPTKCGLMVGI- 235

Query: 341 GETDDDFRATMDLVDKIGYAQAFSFKY 367
           GE + +  A ++ +           +Y
Sbjct: 236 GEIEAEVIALLNDLKDHYVDLVTIGQY 262


>gi|255655259|ref|ZP_05400668.1| radical SAM-superfamily protein [Clostridium difficile QCD-23m63]
 gi|296451244|ref|ZP_06892984.1| oxygen-independent coproporphyrinogen III oxidase [Clostridium
           difficile NAP08]
 gi|296880404|ref|ZP_06904367.1| oxygen-independent coproporphyrinogen III oxidase [Clostridium
           difficile NAP07]
 gi|296259850|gb|EFH06705.1| oxygen-independent coproporphyrinogen III oxidase [Clostridium
           difficile NAP08]
 gi|296428645|gb|EFH14529.1| oxygen-independent coproporphyrinogen III oxidase [Clostridium
           difficile NAP07]
          Length = 356

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 33/213 (15%), Positives = 75/213 (35%), Gaps = 13/213 (6%)

Query: 173 KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCE----ITLL 228
           K+ +       +GC   C FC      G+    +     +   + ++    +    I   
Sbjct: 2   KKRIIPIFVPHKGCPHDCIFCNQKKITGVSTDVTSEDARNIIEECLETIDKDADVEIAFF 61

Query: 229 GQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLM 288
           G +  A     +D +K   S     + +  GLV+    ++ P  + + ++    +     
Sbjct: 62  GGSFTAI---DIDIQKSLLSVAKEYVEK--GLVKDIRMSTRPDCIDEDILSMLKEYKT-- 114

Query: 289 PYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFR 348
             + L VQS  +++L    R H +    +    I++    I +    ++G P +T++   
Sbjct: 115 SIIELGVQSLDEKVLLDSIRGHQSEIVYKSSKMIKNS--GIKLGLQMMIGLPTDTEEKCI 172

Query: 349 ATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
            T     ++       +       T    ++EQ
Sbjct: 173 FTAKKFVELKPDCVRVYPTLVVKDTGLEKLMEQ 205


>gi|218532951|ref|YP_002423767.1| radical SAM protein [Methylobacterium chloromethanicum CM4]
 gi|218525254|gb|ACK85839.1| Radical SAM domain protein [Methylobacterium chloromethanicum CM4]
          Length = 688

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 44/243 (18%), Positives = 78/243 (32%), Gaps = 34/243 (13%)

Query: 161 ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLID 219
              S  D        +   +TI  GC   CTFC +    G  I +RS   ++ E  ++ D
Sbjct: 332 PHPSYGDAKIPAWDMIKFSVTIMRGCFGGCTFCSITEHEGRVIQNRSEGSILREIERIRD 391

Query: 220 NGVCEITLL----GQNVNAWRGKGLDGE----------------------KCTFSDLLYS 253
                  ++    G   N +R    D +                            L   
Sbjct: 392 KTPGFTGVISDVGGPTANMYRMACKDPKIEAACRLPSCVFPDICPNLNTSHDDLIRLYRK 451

Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRRH- 310
           + E+KG+ ++   +    D++    +   +L    +   L +  +      L  M +   
Sbjct: 452 VREVKGVKKVMVASGVRYDLAVRSPEYVEELVTHHVGGRLKIAPEHTERGPLDLMMKPGI 511

Query: 311 -TAYEYRQIIDRIRSVRPD-IAISSDFIVGFPGETDDDFRATMDLVDKIGY--AQAFSFK 366
            T   ++++ D           +   FI   PG TD+D       + K  Y   Q  +F 
Sbjct: 512 GTYDRFKEMFDAAAKKAGKKYYLIPYFIAAHPGTTDEDMLNLALWLKKNDYRADQVQTFL 571

Query: 367 YSP 369
            SP
Sbjct: 572 PSP 574


>gi|253584223|ref|ZP_04861421.1| oxygen-independent coproporphyrinogen III oxidase [Fusobacterium
           varium ATCC 27725]
 gi|251834795|gb|EES63358.1| oxygen-independent coproporphyrinogen III oxidase [Fusobacterium
           varium ATCC 27725]
          Length = 305

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 45/235 (19%), Positives = 95/235 (40%), Gaps = 30/235 (12%)

Query: 188 KFCTFCVVPYTRGIEISR--SLSQVVDEARKLIDNGVCEITLLG--QNVNAWRGKGLDGE 243
           K C FC    +     SR  S+ + ++E  KLI+N      ++   QN            
Sbjct: 43  KGCIFCSESGSGDFAGSRRLSIDEQIEEQLKLIENKFPSGKVIAYFQNFTNTYADIDYLR 102

Query: 244 KCTFSDLLY-SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
           K  +  L +  +  +    R      +  ++   +       +    ++ L +Q+ ++ +
Sbjct: 103 KIYYEALSHPRVIGLAIATRPDCLGENIIELLSEI------NNKYFLWVELGLQTINEEV 156

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
            K +NR+++   Y +  ++++S   +I   +  I+G PGE ++D   T    +K      
Sbjct: 157 AKIINRQYSLKTYEEAAEKLKSR--NIKFVTHIIIGLPGEKENDSLDTALFSEKC----- 209

Query: 363 FSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVL 417
                    GT G  +   +   +K  +L  L KK  E ++   D  V +++++L
Sbjct: 210 ---------GTWGIKI--HLLHIIKNTKLETLYKK-NELKIQKKDEYVKKVVKIL 252


>gi|172035387|ref|YP_001801888.1| hypothetical protein cce_0471 [Cyanothece sp. ATCC 51142]
 gi|171696841|gb|ACB49822.1| unknown [Cyanothece sp. ATCC 51142]
          Length = 860

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 47/316 (14%), Positives = 94/316 (29%), Gaps = 55/316 (17%)

Query: 98  GGDLLVVVAGCVAQAEGEEILRRSPIVNVVV--GPQTYYRLPELL--------------- 140
             +        +A  +GEE+L   P + +++  G +       LL               
Sbjct: 155 NPEPFAEFFDFMALGDGEELL---PEIGLIIEQGKENNLSKQALLLDLAQIPGVYVPRFY 211

Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDG-------GYNRKRGVTAFLTIQEGCDKFCTFC 193
           +    G+ V +          R+S            Y         + I+ GC + C FC
Sbjct: 212 DETEAGEVVPNRPDVPARILRRVSPPMPAYAIGLVPYIETIHDRLVVEIRRGCTRGCRFC 271

Query: 194 VVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLY 252
                           V++   + I   G  E +LL                   +++  
Sbjct: 272 QPGMLTRPARDVQPDDVIETIERGIRETGHNEFSLLS-----LSCSDYLALPAVGTEIKN 326

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPV--QSGSDRILKSMNRRH 310
            L        +  +    R       +   ++        L    ++G+ R+   +N+  
Sbjct: 327 RL----KDENITLSLPSQRVDRFD--ENIANIVGGNRQSGLTFAPEAGTQRMRDVINKGL 380

Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFR---ATMDLVDK---------IG 358
           T  E  + +        D  +   F++G PGETD D      T+  + +         + 
Sbjct: 381 TNEELLRGVKTAVEQGWD-KVKLYFMIGLPGETDMDVLGIVETVRWLRQECRIKGRKPLQ 439

Query: 359 YAQAFSFKYSPRLGTP 374
           +       ++P+  TP
Sbjct: 440 FT-ITVSNFTPKPHTP 454


>gi|163760100|ref|ZP_02167183.1| putative lipoyl synthase [Hoeflea phototrophica DFL-43]
 gi|162282499|gb|EDQ32787.1| putative lipoyl synthase [Hoeflea phototrophica DFL-43]
          Length = 330

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/194 (14%), Positives = 68/194 (35%), Gaps = 11/194 (5%)

Query: 174 RGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVN 233
           +    F+ + E C + C FC V    G   +  +++  + A+ +   G+  + +   +  
Sbjct: 80  KKHATFMIMGEICTRACAFCNV--ITGKPNALDMNEPYNVAKAVKQMGLQHVVITSVD-- 135

Query: 234 AWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHL 293
             R    DG    F  ++ S+        +   T         L +       +  +   
Sbjct: 136 --RDDLDDGGAEHFEKVIRSIRAASPGTTIEILTPDFLRKPGALERVVAAKPDVFNH--- 190

Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
            +++     L ++      +   +++ R++ + P +   S  +VG  GE  ++    MD 
Sbjct: 191 NLETVPGNYL-TVRPGARYFHSLRLLQRVKELDPSMFTKSGIMVGL-GEERNEVLQLMDD 248

Query: 354 VDKIGYAQAFSFKY 367
           +           +Y
Sbjct: 249 LRSADVDFMTIGQY 262


>gi|157364597|ref|YP_001471364.1| biotin synthase [Thermotoga lettingae TMO]
 gi|157315201|gb|ABV34300.1| Radical SAM domain protein [Thermotoga lettingae TMO]
          Length = 346

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 36/263 (13%), Positives = 89/263 (33%), Gaps = 23/263 (8%)

Query: 120 RSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAF 179
               V   +         E +       RV +  +++ D+  +  +    Y R       
Sbjct: 1   MFEGVLKKILNHPEKVDLEEIAFLLSDSRVDEKLFALADEVRQKYMGKDVYLR-----GI 55

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSL--SQVVDEARKLIDNGVCEITLLGQNVNAWRG 237
           +     C   C +C +  +        +   +++  AR +   GV  I L         G
Sbjct: 56  IEFSNYCRNDCLYCGIRASNRNVKRYRMKADEIIHRARVIYQMGVKTIVLQS-------G 108

Query: 238 KGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQS 297
           + L  ++ + + ++  + ++K  V L        + +    +   +         +  ++
Sbjct: 109 EDLFYDEESIAYVIKEIKKMKVAVTLSIG-----ERTYEEYRYWKESG--ADRYLMRHET 161

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
             ++I + M+   +     + + +++ +  +I   S  +VG PG+ D      +  V ++
Sbjct: 162 ADEQIYEKMHPGDSLQNRIEHLRKLKQLGYEIGAGS--MVGLPGQNDYSLAKDVLFVYEL 219

Query: 358 GYAQAFSFKYSPRLGTPGSNMLE 380
                    + P   TP SN   
Sbjct: 220 DADMVGIGPFIPHPNTPLSNFKG 242


>gi|154505211|ref|ZP_02041949.1| hypothetical protein RUMGNA_02724 [Ruminococcus gnavus ATCC 29149]
 gi|153794409|gb|EDN76829.1| hypothetical protein RUMGNA_02724 [Ruminococcus gnavus ATCC 29149]
          Length = 353

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/203 (11%), Positives = 63/203 (31%), Gaps = 15/203 (7%)

Query: 176 VTAFLTIQEGCDKFCTFCVVPYTRGI-EISR-SLSQVVDEARKLIDNGVCEITLLGQNVN 233
           +   +     C   C +C +          R +  +++       + G     L G    
Sbjct: 57  IRGLIEFTNYCRNNCYYCGIRSGNTHVHRYRLTKEEILSCCETGYELGFRTFVLQG---- 112

Query: 234 AWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHL 293
              G+         SD+++++        +  +T          +   G    L+ +   
Sbjct: 113 ---GEDPYYTTARLSDVVHTIRTTYPDCAITLSTGEATKEEYQQLFDAGANRFLLRHETY 169

Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
             +       K    + +A   +Q +  ++ +     + + F+VG P +T +     +  
Sbjct: 170 NTEHYQ----KLHPAQLSAAHRQQCLWDLKEI--GYQVGTGFMVGSPWQTSEHLAEDLLF 223

Query: 354 VDKIGYAQAFSFKYSPRLGTPGS 376
           + ++         + P   TP +
Sbjct: 224 LKELNPQMVGIGPFIPHHDTPFA 246


>gi|148238723|ref|YP_001224110.1| lipoyl synthase [Synechococcus sp. WH 7803]
 gi|147847262|emb|CAK22813.1| Lipoate synthase [Synechococcus sp. WH 7803]
          Length = 292

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 67/220 (30%), Gaps = 11/220 (5%)

Query: 153 DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVD 212
           D  +    +  S  + G     G   FL +  GC + C +C +            ++   
Sbjct: 29  DLKLNTVCQEASCPNIGECFAGGTATFLIMGPGCTRACPYCDI-DFDKSVRELDPTEPER 87

Query: 213 EARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
               +   G+  + +   N    R    DG    F   +  + +   L  +         
Sbjct: 88  LGEAVARLGLKHVVITSVN----RDDLQDGGASQFVACIEQVKQRSPLTTIELLIPDFCG 143

Query: 273 MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAIS 332
             D L K       ++ +    V     R+ +    +       +++ R+R   P     
Sbjct: 144 NWDALAKVMAAAPHVLNHNIETV----PRMYRLARPQGIYERSLELLQRVRDDWPRAYSK 199

Query: 333 SDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY-SPRL 371
           S  +VG  GE DD+    +  +           +Y SP  
Sbjct: 200 SGLMVGL-GENDDEVIDVLRDLRTHRVDIVTIGQYLSPGP 238


>gi|154249903|ref|YP_001410728.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Fervidobacterium nodosum Rt17-B1]
 gi|154153839|gb|ABS61071.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Fervidobacterium nodosum Rt17-B1]
          Length = 370

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/205 (15%), Positives = 67/205 (32%), Gaps = 21/205 (10%)

Query: 167 DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEIT 226
           D   N K G+   +     C K C +C         +S     V +   +  +  + EI 
Sbjct: 2   DDIKNFKLGLYVHIPF---CKKRCIYC-------DFVSY----VENNFDEYTEYLLNEID 47

Query: 227 LLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV 286
           L  + +N+       G        + ++S+I   +    + +    +         +   
Sbjct: 48  LYKEYLNSGIDTLYIGGGTPSIFPIKNISKIFEKLEPYISNNAEITIEVNPESFTKENAQ 107

Query: 287 LMP-----YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPG 341
                    + + +QS  D +LK   R +    + +  D  +    +I +  DFI+G PG
Sbjct: 108 FYKKIGVNRISMGLQSADDVVLKKSGRLYDFETFIRKFDIAKRYFDNINV--DFIIGLPG 165

Query: 342 ETDDDFRATMDLVDKIGYAQAFSFK 366
           E+       +  +          + 
Sbjct: 166 ESWSTIGKNVQFISDFLPDHISVYM 190


>gi|262167039|ref|ZP_06034756.1| coproporphyrinogen III oxidase oxygen-independent [Vibrio cholerae
           RC27]
 gi|262024557|gb|EEY43241.1| coproporphyrinogen III oxidase oxygen-independent [Vibrio cholerae
           RC27]
          Length = 462

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 52/298 (17%), Positives = 105/298 (35%), Gaps = 24/298 (8%)

Query: 127 VVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVD----GGYNRKRGVTAFLTI 182
           VV  Q       +L++  +      +  +  +  E  +I D         +R ++ ++ I
Sbjct: 5   VVPSQQIVWDQAILDKYNYSGPRYTSYPTAVEFHEAFTIADFDMACTQYPERPLSLYIHI 64

Query: 183 QEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG 242
              C K C +C          S    + +D     I        L+G+NV         G
Sbjct: 65  PF-CHKLCYYCGCNKVITRH-SHKADEYLDVLEHEIRQ--RASLLIGRNVTQLH---FGG 117

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL-------MPYLHLPV 295
              TF      +S +  L+R  +  +   ++S  +      L+VL          + + V
Sbjct: 118 GTPTF-LTNAQISRLMTLLRSEFHFADEAEISIEIDPREIQLEVLDHLRQEGFNRVSIGV 176

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS-DFIVGFPGETDDDFRATMDLV 354
           Q  +  + K +NR         +++R + +      ++ D I G P +T   F  T+  V
Sbjct: 177 QDFNKEVQKLVNREQDEQFIFDLVERAKQL--GFRSTNLDLIYGLPKQTAVTFAQTLQQV 234

Query: 355 DKIGYAQAFSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVG 411
             +   +   F Y+       +   +++ D     E+L  LQ+ +     +     +G
Sbjct: 235 LTMQPGRLSVFNYAHMPQLFAAQRKIKEADLPAAEEKLAILQQTITTLTGAGYQ-FIG 291


>gi|85702797|ref|ZP_01033901.1| lipoyl synthase [Roseovarius sp. 217]
 gi|85671725|gb|EAQ26582.1| lipoyl synthase [Roseovarius sp. 217]
          Length = 314

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 39/243 (16%), Positives = 81/243 (33%), Gaps = 18/243 (7%)

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           +A F    +  ++ +    E     + G    +G    + + E C + CTFC V    G 
Sbjct: 37  KAYFETHRIMREHKLVTVCEEAGCPNAGECWSQGHATMMIMGEICTRGCTFCNV--ATGK 94

Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
             +    +    A  +   G+  + +   +    R    DG    F+  + ++       
Sbjct: 95  PQTLDAFEPGRVADAVSKLGLKHVVITSVD----RDDLEDGGAEHFAQTIRAIRHRAPGT 150

Query: 262 RLRYTTSHPRDMSDCLIKAH--GDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY-RQI 318
            +   T      +D +++       DV    L       +   L    R    Y +  ++
Sbjct: 151 TIEILTPDFLHCADSVLETVVAAKPDVFNHNLE------TVPGLYLTVRPGARYFHSLRL 204

Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378
           + R++ + P +   S  +VG  GE        MD +           +Y     TP  + 
Sbjct: 205 LQRVKEMDPTMFTKSGIMVGL-GEDRQSVHQVMDDMRAAEIDFLTIGQY--LQPTPKHHA 261

Query: 379 LEQ 381
           +++
Sbjct: 262 VDR 264


>gi|238752394|ref|ZP_04613872.1| Coproporphyrinogen III oxidase [Yersinia rohdei ATCC 43380]
 gi|238709435|gb|EEQ01675.1| Coproporphyrinogen III oxidase [Yersinia rohdei ATCC 43380]
          Length = 414

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/197 (16%), Positives = 73/197 (37%), Gaps = 10/197 (5%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C   CTFC   + +      S ++  D   + ++       L G  ++A    G      
Sbjct: 40  CATHCTFCG--FYQNPLQPESTARYTDYLLQELNMEAASPLLQGGPIHAIYFGGGTPSAL 97

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRD-----MSDCLIKAHGDLDVLMPYLHLPVQSGSD 300
           +   L   +S+++  + L        +       D  I A   L+       + +Q+ + 
Sbjct: 98  SAEQLHRIISQLRQNLPLAPDCEITVEGRIFNFDDERIDAC--LEAGANRFSVGIQTFNT 155

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
           RI + M R+    +  + +  + + R   A+  D + G P +T + ++  + +V ++   
Sbjct: 156 RIRQRMGRKADRDQAIRFLTDL-ARRDRAAVVCDLMFGLPHQTPETWQEDLAIVRQLPLD 214

Query: 361 QAFSFKYSPRLGTPGSN 377
               +  +    TP + 
Sbjct: 215 GVDLYALNLLPTTPLAK 231


>gi|313791715|gb|EFS39826.1| radical SAM domain protein [Propionibacterium acnes HL110PA1]
 gi|313802201|gb|EFS43433.1| radical SAM domain protein [Propionibacterium acnes HL110PA2]
 gi|313838528|gb|EFS76242.1| radical SAM domain protein [Propionibacterium acnes HL086PA1]
 gi|315077659|gb|EFT49715.1| radical SAM domain protein [Propionibacterium acnes HL053PA2]
 gi|315080263|gb|EFT52239.1| radical SAM domain protein [Propionibacterium acnes HL078PA1]
 gi|327452933|gb|EGE99587.1| radical SAM domain protein [Propionibacterium acnes HL092PA1]
          Length = 650

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 61/386 (15%), Positives = 113/386 (29%), Gaps = 54/386 (13%)

Query: 71  HIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGP 130
            +     E        IR+ K      G + L+V                  + +  +G 
Sbjct: 166 AVLGDGEEACLEISEIIRDWKKEGCPGGREGLLVRLAATGGIYVPCFYDVEYLDDGTIGK 225

Query: 131 QTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190
               RL            V+D D     K   + + +  + R       + I  GC + C
Sbjct: 226 VAPNRLEA--PYTVSKHTVMDLDEWQYPKRPIVPVAETVHERYS-----VEIFRGCTRGC 278

Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFSD 249
            FC           RS+  +       +   G+ E+ LL   +++     +       +D
Sbjct: 279 RFCQAGMITRPVRERSIDAIAQMVDGGLQATGLEEVGLLS--LSSADHSEISDITKGLAD 336

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
                      V L   ++     +  L             L    + GS+R+ + +N++
Sbjct: 337 RYE-----GTNVSLSLPSTRVDTFNIDLANELSRNGR-RSGLTFAPEGGSERMRRVINKK 390

Query: 310 HTAYEYRQIIDR-----IRSVRPDIAISSDFIVGFPGETDDDFRATMDLV---------- 354
            T  +  + +        R ++        F+ G P ETD+D     D+           
Sbjct: 391 VTEEDLIRTVATAFGNGWRQIK------LYFMCGLPTETDEDVLGIHDMASHVVAAGRAA 444

Query: 355 ---DKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLRE-------QQVS 404
                I         + P+  TP      Q   +    RL  L+  +R          + 
Sbjct: 445 AGRKDIRCT-ISIGGFVPKPHTP-FQWAAQASADEVDHRLSVLRDSIRADRQFGRSIGMR 502

Query: 405 FNDACVGQIIEVLIEKHGKEKGKLVG 430
           ++D   G     +IE       + VG
Sbjct: 503 YHDGRPG-----IIEGLLSRGDRRVG 523


>gi|313217112|emb|CBY38287.1| unnamed protein product [Oikopleura dioica]
          Length = 354

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/216 (12%), Positives = 77/216 (35%), Gaps = 13/216 (6%)

Query: 156 VEDKFERLSIVDGGYNRKRGVTAFLTIQ-EGCDKFCTFCVVPYTR--GIEISRSLSQVVD 212
           V ++    +I +     +   TA + +  + C + C FC V  +R  G     + ++ ++
Sbjct: 84  VCEEARCPNIGECWGGGEGSATATIMVMGDTCTRGCRFCSVKTSRNPGPL---NPNEPLE 140

Query: 213 EARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
            A+++    +  I +   +    R    DG    F++++  + +    + +         
Sbjct: 141 TAQRIKAWDIGYIVITSVD----RDDIPDGGASHFAEVVRQVKKENPDLLVECLLPD-WR 195

Query: 273 MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAIS 332
                +       + +   ++       + ++     +       + +  +   P +   
Sbjct: 196 GDLDCVDVTAKSGLDVYAHNVETVKRLQKFVRDPRAGY-EQSMLTLEEAKKRGPPGLVTK 254

Query: 333 SDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
           +  ++G  GETD++   TM  +  IG       +Y 
Sbjct: 255 TSLMLGM-GETDEEILQTMKDLRSIGVDCVTFGQYM 289


>gi|167749643|ref|ZP_02421770.1| hypothetical protein EUBSIR_00601 [Eubacterium siraeum DSM 15702]
 gi|167657396|gb|EDS01526.1| hypothetical protein EUBSIR_00601 [Eubacterium siraeum DSM 15702]
          Length = 355

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 37/243 (15%), Positives = 80/243 (32%), Gaps = 16/243 (6%)

Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKR-GVTAFLTIQEGCDKFCTFCVVPYT 198
           LE+  +   + + D   +  FE    V   Y  K   +   +   + C   C +C +  +
Sbjct: 20  LEKGEYVSLIENRDAVRDYLFELSRSVREKYYGKDVYIRGLIEFTDYCKNDCYYCGIRCS 79

Query: 199 RG-IEISR-SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256
               E  R S  Q++D  +   + G     L G       G+          D++ S+  
Sbjct: 80  NKQAERYRLSKEQILDCCKTGYELGFRTFVLQG-------GEDPYYSDDMICDIVCSIKR 132

Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
                 +  +     + S       G    L+ +     +  S    K      +A   +
Sbjct: 133 DFPDCAVTLSIGEKSEESYRRYFESGADRYLLRHETADYEHYS----KLHPPGLSAKHRQ 188

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
             +  ++ +       + F+VG P +T ++    M  ++++         + P   TP +
Sbjct: 189 DCLRTLKKI--GYQTGAGFMVGSPYQTAENLADDMLFLEELKPEMVGIGPFIPHHATPFA 246

Query: 377 NML 379
           +  
Sbjct: 247 DKP 249


>gi|314931889|gb|EFS95720.1| radical SAM domain protein [Propionibacterium acnes HL067PA1]
          Length = 650

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 61/386 (15%), Positives = 113/386 (29%), Gaps = 54/386 (13%)

Query: 71  HIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGP 130
            +     E        IR+ K      G + L+V                  + +  +G 
Sbjct: 166 AVLGDGEEACLGISEIIRDWKKEGCPGGREGLLVRLAATGGIYVPCFYDVEYLDDGTIGK 225

Query: 131 QTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190
               RL            V+D D     K   + + +  + R       + I  GC + C
Sbjct: 226 VAPNRLEA--PYTVSKHTVMDLDEWQYPKRPIVPVAETVHERYS-----VEIFRGCTRGC 278

Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFSD 249
            FC           RS+  +       +   G+ E+ LL   +++     +       +D
Sbjct: 279 RFCQAGMITRPVRERSIDAIAQMVDGGLQATGLEEVGLLS--LSSADHSEISDITKGLAD 336

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
                      V L   ++     +  L             L    + GS+R+ + +N++
Sbjct: 337 RYE-----GTNVSLSLPSTRVDTFNIDLANELSRNGR-RSGLTFAPEGGSERMRRVINKK 390

Query: 310 HTAYEYRQIIDR-----IRSVRPDIAISSDFIVGFPGETDDDFRATMDLV---------- 354
            T  +  + +        R ++        F+ G P ETD+D     D+           
Sbjct: 391 VTEEDLIRTVATAFGNGWRQIK------LYFMCGLPTETDEDVLGIHDMASHVVAAGRAA 444

Query: 355 ---DKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLRE-------QQVS 404
                I         + P+  TP      Q   +    RL  L+  +R          + 
Sbjct: 445 AGRKDIRCT-ISIGGFVPKPHTP-FQWAAQASADEVDHRLSVLRDSIRADRQFGRSIGMR 502

Query: 405 FNDACVGQIIEVLIEKHGKEKGKLVG 430
           ++D   G     +IE       + VG
Sbjct: 503 YHDGRPG-----IIEGLLSRGDRRVG 523


>gi|284931180|gb|ADC31118.1| coproporphyrinogen III oxidase [Mycoplasma gallisepticum str. F]
          Length = 348

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 39/226 (17%), Positives = 79/226 (34%), Gaps = 14/226 (6%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C K CTFC     +   I R         + L+D    +     +  ++    G      
Sbjct: 12  CQKICTFC---DFKRELIDR--HNPKKVVQDLVDEIERK-QFSDEQFSSIYLGGGTPNVF 65

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLI---KAHGDLDVLMPYLHLPVQSGSDRI 302
               L Y LS+IK       T     + +  L+   +A      L+    + +Q  +++I
Sbjct: 66  DDELLDYFLSKIKK--YAAKTCEFTIECNPDLVTKSQAQILKKNLVNRASVGIQIVNNKI 123

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIA-ISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
           LK +NR H      + +  +      I  I+ D +   P    +D    +  + K     
Sbjct: 124 LKYLNRTHDINHCYEAMQNLYDA--GITNINIDLMYALPHMKKEDVLENIKFIKKTKPNH 181

Query: 362 AFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFND 407
              +    + G   +    ++D + +A +L  ++ +L +      +
Sbjct: 182 ISFYGLDLKPGAYLTKTPYKIDLDQEAMQLRVMKAELNKINYKRYE 227


>gi|254360900|ref|ZP_04977046.1| lipoic acid synthase [Mannheimia haemolytica PHL213]
 gi|261493872|ref|ZP_05990384.1| lipoic acid synthase [Mannheimia haemolytica serotype A2 str.
           BOVINE]
 gi|261495138|ref|ZP_05991602.1| lipoic acid synthase [Mannheimia haemolytica serotype A2 str.
           OVINE]
 gi|153092379|gb|EDN73442.1| lipoic acid synthase [Mannheimia haemolytica PHL213]
 gi|261309208|gb|EEY10447.1| lipoic acid synthase [Mannheimia haemolytica serotype A2 str.
           OVINE]
 gi|261310474|gb|EEY11665.1| lipoic acid synthase [Mannheimia haemolytica serotype A2 str.
           BOVINE]
          Length = 335

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/214 (14%), Positives = 65/214 (30%), Gaps = 10/214 (4%)

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           + +    E  S  +       G   F+ +   C + C FC V    G  +     +    
Sbjct: 76  HGLHSVCEEASCPNLHECFNHGTATFMIMGAICTRRCPFCDV--AHGKPLPLDPDEPRKV 133

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
           A  + D  +  + +   +    R    D     FS  +  +  +    ++       R  
Sbjct: 134 AETVQDMKLKYVVITSVD----RDDLPDRGAAHFSATVREIKALNPHCKVEILVPDFRGR 189

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
            +  +    +     P +         R+ + +          +++   +   P I   S
Sbjct: 190 VEQAVAILKENP---PDVFNHNLENVPRLYREVRPGADYKWSLELLKIFKQEFPHIPTKS 246

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
             +VG  GET+++    M  +   G       +Y
Sbjct: 247 GLMVGL-GETNEEILEVMQDLRDHGVTMLTIGQY 279


>gi|304972|gb|AAB03001.1| ORF_o459 [Escherichia coli str. K-12 substr. MG1655]
          Length = 459

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 44/269 (16%), Positives = 89/269 (33%), Gaps = 30/269 (11%)

Query: 157 EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS-------LSQ 209
           ED  E+  +       +R ++ ++ I   C K C FC        +  ++         +
Sbjct: 36  EDFGEQAFLQAVARYPERPLSLYVHIPF-CHKLCYFCGCNKIVTRQQHKADQYLDALEQE 94

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE-----IKGLVRLR 264
           +V  A       V ++   G       G      K   S L+  L E         + + 
Sbjct: 95  IVHRAPLFAGRHVSQLHWGG-------GTPTYLNKAQISRLMKLLRENFQFNADAEISIE 147

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
                PR++   ++            L + VQ  +  + + +NR         +++  R 
Sbjct: 148 V---DPREIELDVLDHLRAEG--FNRLSMGVQDFNKEVQRLVNREQDEEFIFALLNHARE 202

Query: 325 VRPDIAISS-DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQV 382
           +      ++ D I G P +T + F  T+  V      +   F Y+       +   ++  
Sbjct: 203 I--GFTSTNIDLIYGLPKQTPESFAFTLKRVAXXNPDRLSVFNYAHLPTIFAAQRKIKDA 260

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVG 411
           D     ++L  LQ+ +     S     +G
Sbjct: 261 DLPSPQQKLDILQETIAFLTQSGYQ-FIG 288


>gi|325266699|ref|ZP_08133375.1| oxygen-independent coproporphyrinogen III oxidase [Kingella
           denitrificans ATCC 33394]
 gi|324981808|gb|EGC17444.1| oxygen-independent coproporphyrinogen III oxidase [Kingella
           denitrificans ATCC 33394]
          Length = 610

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/202 (17%), Positives = 76/202 (37%), Gaps = 14/202 (6%)

Query: 186 CDKFCTFCVV------PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
           C   C FC            G  + + + ++  EA +   +G  +    G       G  
Sbjct: 70  CANHCVFCGFYRNAWKEEQGGAYVDKVIEELAAEAEQRSGSGKIQAVYFG------GGTP 123

Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
              +      L+ +  +   L      T   R     L KA   ++  +  + + +Q+ +
Sbjct: 124 TALDTPDLVRLIRACYQYLPLADNCEFTLEGRMSHFGLNKARAAVEAGVNRISIGIQTFN 183

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
             I + + R+H+  E    +  +  +  D  I +D I G PG+TDD +   ++    +  
Sbjct: 184 TAIRRRLGRKHSGEEAYGYLKELCGL--DAVIVADLIFGLPGQTDDIWEHDIERAASLPL 241

Query: 360 AQAFSFKYSPRLGTPGSNMLEQ 381
           +   ++ ++     P + M+E+
Sbjct: 242 SGLDTYAFNCYPFLPINRMIEK 263


>gi|327442765|gb|EGE89419.1| radical SAM domain protein [Propionibacterium acnes HL013PA2]
          Length = 567

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 61/386 (15%), Positives = 113/386 (29%), Gaps = 54/386 (13%)

Query: 71  HIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGP 130
            +     E        IR+ K      G + L+V                  + +  +G 
Sbjct: 83  AVLGDGEEACLEISEIIRDWKKEGCPGGREGLLVRLAATGGIYVPCFYDVEYLDDGTIGK 142

Query: 131 QTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190
               RL            V+D D     K   + + +  + R       + I  GC + C
Sbjct: 143 VAPNRLEA--PYTVSKHTVMDLDEWQYPKRPIVPVAETVHERYS-----VEIFRGCTRGC 195

Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFSD 249
            FC           RS+  +       +   G+ E+ LL   +++     +       +D
Sbjct: 196 RFCQAGMITRPVRERSIDAIAQMVDGGLQATGLEEVGLLS--LSSADHSEISDITKGLAD 253

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
                      V L   ++     +  L             L    + GS+R+ + +N++
Sbjct: 254 RYE-----GTNVSLSLPSTRVDTFNIDLANELSRNGR-RSGLTFAPEGGSERMRRVINKK 307

Query: 310 HTAYEYRQIIDR-----IRSVRPDIAISSDFIVGFPGETDDDFRATMDLV---------- 354
            T  +  + +        R ++        F+ G P ETD+D     D+           
Sbjct: 308 VTEEDLIRTVATAFGNGWRQIK------LYFMCGLPTETDEDVLGIHDMASHVVAAGRAA 361

Query: 355 ---DKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLRE-------QQVS 404
                I         + P+  TP      Q   +    RL  L+  +R          + 
Sbjct: 362 AGRKDIRCT-ISIGGFVPKPHTP-FQWAAQASADEVDHRLSVLRDSIRADRQFGRSIGMR 419

Query: 405 FNDACVGQIIEVLIEKHGKEKGKLVG 430
           ++D   G     +IE       + VG
Sbjct: 420 YHDGRPG-----IIEGLLSRGDRRVG 440


>gi|315923957|ref|ZP_07920185.1| radical SAM domain protein [Pseudoramibacter alactolyticus ATCC
           23263]
 gi|315622797|gb|EFV02750.1| radical SAM domain protein [Pseudoramibacter alactolyticus ATCC
           23263]
          Length = 354

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/216 (13%), Positives = 64/216 (29%), Gaps = 23/216 (10%)

Query: 165 IVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI-EISR-SLSQVVDEARKLIDNGV 222
           + +  Y R   +   +     C   C +C +  + G  E  R +  +++    +    G 
Sbjct: 49  VREAHYGRAVYLRGLIEFSNICRNDCRYCGIRRSNGRIERYRLTAEEILACCDQGYALGF 108

Query: 223 CEITLLGQNVNAWRGKGL----DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLI 278
               L       +    L       K    D   +LS +       Y           L+
Sbjct: 109 RTFVLQSGEDTYYTDDALCALVARIKHAHPDCAVTLS-LGEKAAASYQAYFDAGADRYLL 167

Query: 279 KAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVG 338
           +       L    H           ++M   H      + ++ ++ +     + +  +VG
Sbjct: 168 RQETTDPALYARWHP----------EAMRLGHR----LRCLETLKRI--GYQVGAGIMVG 211

Query: 339 FPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
            PG+T +   A +  +    +       + P   TP
Sbjct: 212 APGQTVESVVADLFYMQAHEFEMVGIGPFIPHKDTP 247


>gi|295395958|ref|ZP_06806143.1| lipoyl synthase [Brevibacterium mcbrellneri ATCC 49030]
 gi|294971231|gb|EFG47121.1| lipoyl synthase [Brevibacterium mcbrellneri ATCC 49030]
          Length = 346

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 79/222 (35%), Gaps = 22/222 (9%)

Query: 184 EGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
           E C + C FC +   +  E+ R   +    A  +   G+   T+ G      R    DG 
Sbjct: 79  EQCTRRCDFCQIETGKPQELDR--DEPRRVAESVAKMGLRYSTVTGV----ARDDLPDGG 132

Query: 244 KCTFSDLLYSLSEIKGL----VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
              +++ +  +  ++        +       ++  D L +       ++ +    V    
Sbjct: 133 AWLYAETVRRIHALEHPDGQGTGVELLIPDFQNRDDDLDEVFSSRPEVLGHNLETV---- 188

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
            RI K +          +++ + R     +   S+ I+G  GET+++    +  + + G 
Sbjct: 189 PRIFKRIRPAFRYERSLEVLTKARKA--GLITKSNLILGM-GETNEEAIEALRDLHEAGT 245

Query: 360 AQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQ 401
                 +Y  R     S++   +D  VK +  + L+    E 
Sbjct: 246 DLVTITQYL-RP----SSLHHPIDRWVKPQDFVELRDAALEI 282


>gi|283479162|emb|CAY75078.1| lipoate synthesis protein LipA [Erwinia pyrifoliae DSM 12163]
          Length = 343

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/183 (16%), Positives = 66/183 (36%), Gaps = 12/183 (6%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V    G   +   ++    A+ + D  +  + +   +    R    DG   
Sbjct: 116 CTRRCPFCDV--AHGRPTAPDANEPGKLAQTIADMALRYVVITSVD----RDDLRDGGAQ 169

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAH-GDLDVLMPYLHLPVQSGSDRILK 304
            F+D + ++ E    +++       R   D  ++        +  +    V     R+ +
Sbjct: 170 HFADCISAIREKSPAIKIETLVPDFRGRMDRALEILNATPPDVFNHNLENV----PRVYR 225

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
            +          ++++R +   P+I   S  +VG  GET+ +    M  + + G      
Sbjct: 226 QVRPGANYDWSLKLLERFKEAHPEIPTKSGLMVGL-GETNAEIVEVMRDLRRHGVTMLTL 284

Query: 365 FKY 367
            +Y
Sbjct: 285 GQY 287


>gi|241763106|ref|ZP_04761166.1| oxygen-independent coproporphyrinogen III oxidase [Acidovorax
           delafieldii 2AN]
 gi|241367731|gb|EER61985.1| oxygen-independent coproporphyrinogen III oxidase [Acidovorax
           delafieldii 2AN]
          Length = 460

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/196 (17%), Positives = 71/196 (36%), Gaps = 20/196 (10%)

Query: 186 CDKFCTFC-----VVPY-----TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW 235
           C+  C +C     +  +          +SR +   +  A       V ++ L G      
Sbjct: 64  CESLCYYCACNKIITKHHDRADVYLRYLSREID--LHTAHCGTGQTVSQLHLGGGTPTFL 121

Query: 236 RGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPV 295
                DG +   + L  S +   G          PR +S   +    +L      L   V
Sbjct: 122 SD---DGLRQLMAMLRRSFTFAPGGEYSIEV--DPRTVSAERLAVLAELG--FNRLSFGV 174

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
           Q     + K+++R   A +   +++  RS+  + +++ D I G P +T + F  T+  V 
Sbjct: 175 QDFDAEVQKAVHRIQPAEQVFALVEAARSLGFE-SVNVDLIYGLPRQTPESFDRTLAQVV 233

Query: 356 KIGYAQAFSFKYSPRL 371
           ++   +   + Y+   
Sbjct: 234 QLRPDRIALYAYAHLP 249


>gi|229527142|ref|ZP_04416536.1| coproporphyrinogen III oxidase oxygen-independent [Vibrio cholerae
           12129(1)]
 gi|229335373|gb|EEO00856.1| coproporphyrinogen III oxidase oxygen-independent [Vibrio cholerae
           12129(1)]
          Length = 480

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 52/298 (17%), Positives = 103/298 (34%), Gaps = 24/298 (8%)

Query: 127 VVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVD----GGYNRKRGVTAFLTI 182
           VV  Q       +L++  +      +  +  +  E  +I D         +R ++ ++ I
Sbjct: 23  VVPSQQIVWDQAILDKYNYSGPRYTSYPTAVEFHEAFTIADFDMACTQYPERPLSLYIHI 82

Query: 183 QEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG 242
              C K C +C          S    + +D     I        L+G+NV         G
Sbjct: 83  PF-CHKLCYYCGCNKVITRH-SHKADEYLDVLEHEIRQ--RASLLIGRNVTQLH---FGG 135

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL-------MPYLHLPV 295
              TF      +S +  L+R  +  +   ++S  +      L+VL          + + V
Sbjct: 136 GTPTF-LTNAQISRLMTLLRSEFHFADEAEISIEIDPREIQLEVLDHLRQEGFNRVSIGV 194

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS-DFIVGFPGETDDDFRATMDLV 354
           Q  +  + K +NR         +++R + +      ++ D I G P +T   F  T+  V
Sbjct: 195 QDFNKEVQKLVNREQDEQFIFDLVERAKQL--GFRSTNLDLIYGLPKQTAATFAQTLQQV 252

Query: 355 DKIGYAQAFSFKYSPRLGTPGSNMLEQ-VDENVKAERLLCLQKKLREQQVSFNDACVG 411
             +   +   F Y+       +    +  D     E+L  LQ+ +     +     +G
Sbjct: 253 LTMQPGRLSVFNYAHMPQLFAAQRKIKGADLPAAEEKLAILQQTITTLTGAGYQ-FIG 309


>gi|15895026|ref|NP_348375.1| BioB/LipA-like protein [Clostridium acetobutylicum ATCC 824]
 gi|15024718|gb|AAK79715.1|AE007684_3 BioB/LipA-like protein [Clostridium acetobutylicum ATCC 824]
 gi|325509163|gb|ADZ20799.1| BioB/LipA-like protein [Clostridium acetobutylicum EA 2018]
          Length = 358

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/206 (15%), Positives = 63/206 (30%), Gaps = 4/206 (1%)

Query: 176 VTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW 235
           +       EGC   C FC      G E   +   V       +D    +   +  +    
Sbjct: 7   IIPIFVPHEGCPHDCVFCNQNTITGEESKVNGDYVKSTVEDYLDTIPNKSATIEISFFGG 66

Query: 236 RGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPV 295
               ++ EK      +    +  G ++    ++ P  + D ++    +    +  + L V
Sbjct: 67  TFTAINIEKQKELLSVARHYKEIGKIKYIRLSTRPDYIDDEILTNLKNYS--VDIIELGV 124

Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
           QS    +L    R HT  +  +    I+       +    ++G PG+  +    T   V 
Sbjct: 125 QSLDSEVLLKSGRGHTKEDVVKASRLIKKY--GFTLGHQIMLGLPGDNAEKDIETTRKVI 182

Query: 356 KIGYAQAFSFKYSPRLGTPGSNMLEQ 381
            +       +       T    M  +
Sbjct: 183 CMKPNICRIYPALVIKDTAMEKMYNR 208


>gi|319651617|ref|ZP_08005744.1| coproporphyrinogen III oxidase [Bacillus sp. 2_A_57_CT2]
 gi|317396684|gb|EFV77395.1| coproporphyrinogen III oxidase [Bacillus sp. 2_A_57_CT2]
          Length = 377

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 43/236 (18%), Positives = 87/236 (36%), Gaps = 25/236 (10%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C+  C +C          ++ + + +D   K ++  + E+        +       G   
Sbjct: 12  CEHICHYCDFNKVF--LKNQPVGEYLDSLDKEMNLALKEV------PASRLDSIFVGGGT 63

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL-------MPYLHLPVQSG 298
             +     L ++ G ++ +       + +          + L       +  L   VQ+ 
Sbjct: 64  PTALNGKQLEKLCGTIKGQLPYDSFTEYTFEANPGDLSEEKLQILHDAGVNRLSFGVQTF 123

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           +D +LK + R H A +  Q I+  + V  D  IS D I   PG+T  DF+ T++      
Sbjct: 124 NDELLKRIGRSHRARDVFQSIEAAKKVGFD-NISIDLIYSLPGQTLQDFKDTLE--TSFT 180

Query: 359 YAQAFSFKYS--PRLGTPGSNM--LEQVD---ENVKAERLLCLQKKLREQQVSFND 407
              A    YS      T   N+    ++    E+V+AE    L +++ +   +  +
Sbjct: 181 LDIAHYSGYSLIIEPKTVFYNLMRKGKLPTPGEDVEAEMYELLMEQMGKHGFAQYE 236


>gi|254566891|ref|XP_002490556.1| Protein involved in biosynthesis of the coenzyme lipoic acid
           [Pichia pastoris GS115]
 gi|306755889|sp|C4QYF2|LIPA_PICPG RecName: Full=Lipoyl synthase, mitochondrial; AltName: Full=Lipoate
           synthase; Short=LS; Short=Lip-syn; AltName: Full=Lipoic
           acid synthase; Flags: Precursor
 gi|238030352|emb|CAY68275.1| Protein involved in biosynthesis of the coenzyme lipoic acid
           [Pichia pastoris GS115]
 gi|328350945|emb|CCA37345.1| lipoic acid synthetase [Pichia pastoris CBS 7435]
          Length = 417

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 36/216 (16%), Positives = 78/216 (36%), Gaps = 14/216 (6%)

Query: 156 VEDKFERLSIVDGGYNRKRGVTAFLTIQ-EGCDKFCTFCVVPYTRGIEISRSLS--QVVD 212
           V ++ +  +I +    +K   TA + +  + C + C FC V   R           +  +
Sbjct: 121 VCEEAKCPNIGECWGGKKSEATATIMLMGDTCTRGCRFCSVKTNRNPA---PPDPNEPEN 177

Query: 213 EARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
            A  +   G+  + L   +    R    DG     +  +  + E    + +   +   R 
Sbjct: 178 TAEAISRWGLGYVVLTTVD----RDDLPDGGAHHLASTVTKIKEKAPQILVECLSGDFRG 233

Query: 273 MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAIS 332
            +  + K      + + + H  +++  D      +RR T  +   ++   +   P +   
Sbjct: 234 -NLEMAKVLASSPLDV-FAH-NLETVEDLTPHIRDRRATYRQSLSVLRAAKEANPRLVTK 290

Query: 333 SDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
           +  ++GF GETDD    T+  +  I        +Y 
Sbjct: 291 TSLMLGF-GETDDQILQTLHDLRNISCDVVTFGQYM 325


>gi|307180287|gb|EFN68320.1| Lipoyl synthase, mitochondrial [Camponotus floridanus]
          Length = 371

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/189 (16%), Positives = 66/189 (34%), Gaps = 22/189 (11%)

Query: 186 CDKFCTFCVVPYTRGIEISRSL---SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG 242
           C + C FC V   R            + ++ A  + D G+  I L   +    R    DG
Sbjct: 132 CTRGCRFCSVKTARTP----PPLDAEEPINTATAIADWGLDYIVLTSVD----RDDLKDG 183

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
                +  +  + +   ++ +       R   +C+        ++   L +   +     
Sbjct: 184 GASHIASTVKEIKKRSNIL-VECLVPDFRGDENCV------ATIVNSNLDVFAHNIETVE 236

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVR---PDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
             +   R    +YRQ +  +++ +   PD+   S  ++G   ETD++   TM  +   G 
Sbjct: 237 RLTPFVRDRRAQYRQSLAVLKAAKKFNPDLITKSSIMLGL-SETDEEVEQTMQDLRDAGV 295

Query: 360 AQAFSFKYS 368
                 +Y 
Sbjct: 296 DALTLGQYM 304


>gi|260911851|ref|ZP_05918418.1| radical SAM domain protein [Prevotella sp. oral taxon 472 str.
           F0295]
 gi|260634062|gb|EEX52185.1| radical SAM domain protein [Prevotella sp. oral taxon 472 str.
           F0295]
          Length = 670

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 47/328 (14%), Positives = 105/328 (32%), Gaps = 68/328 (20%)

Query: 111 QAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGY 170
           +A  ++  +++     +           LL+       VV+  Y      E  +  D  Y
Sbjct: 228 EACLKDKRKQAENFKHIEEEANKVHAQRLLQEVDGMYAVVNPPYPTLTTQELDATFDLPY 287

Query: 171 NR-------KRGVTAFLTI------QEGCDKFCTFCVVPYTRGIE-ISRSLSQVVDEARK 216
            R       K+ + A+  I       +GC   C+FC +   +G   + RS   +++E +K
Sbjct: 288 TRLPHPKYKKKRIPAYEMIKFSVNMHQGCFGGCSFCTISAHQGKFVVCRSKESILNEVKK 347

Query: 217 LIDN----------GVCEITLLGQ---------------NVNAWRGKGLDGEKCTFSDLL 251
           +             G     + G                 +N      L+ +    +++ 
Sbjct: 348 VAQMPDFKGYLSDLGGPSANMYGMAGRNKKACEVCKRPSCINPDICPNLNTDHSRLTEIY 407

Query: 252 YSLSEIKGLVRLRYT-----------------TSHPRDMSDCLIKAHGDLDVLMPYLHLP 294
            ++  +  + +                          + +  LI+ H     +   L + 
Sbjct: 408 RAVDALPEIKKSFIGSGVRYDLLLHKSKDKKVNDAAMEYTKELIRHH-----VSGRLKVA 462

Query: 295 VQSGSDRILKSMNRR--HTAYEYRQIIDRIRS---VRPDIAISSDFIVGFPGETDDDFRA 349
            +  SD +L+SM +       E+++I D+I     +R  I     F+   P   ++D   
Sbjct: 463 PEHTSDEVLRSMRKPSFKQFEEFKRIFDKINKEENLRQQIIPY--FMSSHPACKEEDMAD 520

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
                 ++ +       ++P   T  + 
Sbjct: 521 LAVRTKRLDFHLEQIQDFTPTPMTVSTE 548


>gi|242278161|ref|YP_002990290.1| radical SAM domain protein [Desulfovibrio salexigens DSM 2638]
 gi|242121055|gb|ACS78751.1| Radical SAM domain protein [Desulfovibrio salexigens DSM 2638]
          Length = 562

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/178 (14%), Positives = 63/178 (35%), Gaps = 17/178 (9%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
           + +  GC   C FC   Y        S+ Q+             ++ L+G  +  W    
Sbjct: 230 VEVNRGCPYGCRFCAAGYIYRPPRHASIDQLKKIVEL---ADPPKVGLVGTALTDW---- 282

Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299
            D                    +   ++     +++ L+         +  + L ++  S
Sbjct: 283 PDLLPYIEWLKKRK-------TKFSLSSVRADGLTEELLDILRAAG--VRTVTLALEGAS 333

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
            R+  + ++     ++ + ++ + + +    +    IVG+PGET  D+     +++KI
Sbjct: 334 RRLRDAASKNLEEEDFLRAVE-LCAAKGVNHLRVYVIVGWPGETAADYDELALMLEKI 390


>gi|166364894|ref|YP_001657167.1| coproporphyrinogen III oxidase [Microcystis aeruginosa NIES-843]
 gi|166087267|dbj|BAG01975.1| coproporphyrinogen III oxidase, anaerobic [Microcystis aeruginosa
           NIES-843]
          Length = 390

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 69/199 (34%), Gaps = 17/199 (8%)

Query: 186 CDKFCTFCVVPYTRGIEISRS--LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243
           C + C +C  P       +       VV+    L +        L Q           G 
Sbjct: 17  CRRRCFYCDFPIFVLGNRTNPATFPPVVEYVEILQEEIS-----LSQGTGKPLETIFFGG 71

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY-------LHLPVQ 296
                  +  L  I   +  ++  +   ++S  +  A   L+ L  Y       + L VQ
Sbjct: 72  GTPSLLPVELLGSILDTLAKKFDFAADIEISMEIDPATFSLEQLQGYLSAGVNRVSLGVQ 131

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS-DFIVGFPGETDDDFRATMDLVD 355
           +  + +L+   R HT  +  Q ++ I+ +   I   S D I G P +T  D+  +++   
Sbjct: 132 AFQEPLLQVSGRSHTVKDIYQAVELIQGL--GIVNYSLDLISGLPQQTLTDWENSLEKAI 189

Query: 356 KIGYAQAFSFKYSPRLGTP 374
           K+  A    +       TP
Sbjct: 190 KLQPAHLSCYDLVLEAVTP 208


>gi|326562562|gb|EGE12875.1| lipoyl synthase [Moraxella catarrhalis 103P14B1]
 gi|326566187|gb|EGE16341.1| lipoyl synthase [Moraxella catarrhalis BC1]
 gi|326573529|gb|EGE23492.1| lipoyl synthase [Moraxella catarrhalis 101P30B1]
          Length = 354

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 68/208 (32%), Gaps = 12/208 (5%)

Query: 161 ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN 220
           E  +  +       G   F+ + + C + C FC V + R   +     +    A  ++  
Sbjct: 76  EEAACPNLPQCFGDGTATFMIMGDICTRRCPFCEVAHGRPNPL--DKDEPKHTAETILGL 133

Query: 221 GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKA 280
           G+    +   +    R    DG    F D++     +     +       R      +  
Sbjct: 134 GLKYAVITSVD----RDDLKDGGAGHFVDVINESKALSPNCLIEILVPDFRGREQVALDL 189

Query: 281 HGDL-DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGF 339
                  +  +    V     R+ K+            ++   ++ RPD+A    F+VG 
Sbjct: 190 LTQTAPDVFNHNIETV----PRLYKAFRPGSDYQHSLNLLKEYKARRPDVATKCGFMVGL 245

Query: 340 PGETDDDFRATMDLVDKIGYAQAFSFKY 367
            GET+D+  A +D +           +Y
Sbjct: 246 -GETEDEVYALLDDLKAHDVDIITIGQY 272


>gi|307566384|ref|ZP_07628823.1| coproporphyrinogen dehydrogenase [Prevotella amnii CRIS 21A-A]
 gi|307344961|gb|EFN90359.1| coproporphyrinogen dehydrogenase [Prevotella amnii CRIS 21A-A]
          Length = 454

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/191 (18%), Positives = 73/191 (38%), Gaps = 19/191 (9%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG--LDGE 243
           C + C +C          S  + +  +  +  ++    EI ++ +++N  R       G 
Sbjct: 57  CYRLCHYC-------GCNSYPMQK-QENVKAYVEAIHKEIDIVAKHLNKKRCISQIHYGG 108

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGD----LDVLMPYLH---LPVQ 296
               S  +  L E    +   + T    +++      + +      +L  + +   + VQ
Sbjct: 109 GSPTSLPVTVLKEFNEHLFSYFPTIEHPEIAIECHPGYLEKNDWYKLLSAHFNRFSIGVQ 168

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
             ++ +LK +NR  +      II  +R      +I+ DF+ G P +T D F  TM     
Sbjct: 169 DFNEDVLKVVNRTPSKLPLLDIIYILRE--GGASINMDFLFGLPLQTPDSFLQTMRKAIT 226

Query: 357 IGYAQAFSFKY 367
           +   +  +F Y
Sbjct: 227 LKPDRLTTFSY 237


>gi|226941486|ref|YP_002796560.1| hypothetical protein LHK_02570 [Laribacter hongkongensis HLHK9]
 gi|226716413|gb|ACO75551.1| radical SAM domain protein [Laribacter hongkongensis HLHK9]
          Length = 634

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/188 (18%), Positives = 64/188 (34%), Gaps = 18/188 (9%)

Query: 180 LTIQEGCDKF-CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK 238
           LTI  GC    C+FC V       ISR        A  L D     I   GQ    +  +
Sbjct: 363 LTIAHGCYWKKCSFCDVSL---DYISRYE---TANASLLADRIEAIIAETGQTGFHFVDE 416

Query: 239 GLDGE--KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQ 296
               +  +    +L+     I     +R+     +     L +       +       ++
Sbjct: 417 AAPPKMLRALAEELIRRRLVITWWGNIRF----EKSFDAGLCRLLAQSGCIAVSG--GLE 470

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
             SDR+LK M +  +  +  ++          I + +  + GFP +T  D    ++ V +
Sbjct: 471 VASDRLLKLMKKGVSVDQVARVTRDFTEA--GILVHAYLMYGFPTQTVQDSVDALEYVRQ 528

Query: 357 IGYAQAFS 364
           + +     
Sbjct: 529 L-FDAGCI 535


>gi|313893987|ref|ZP_07827553.1| iron-only hydrogenase maturation rSAM protein HydE [Veillonella sp.
           oral taxon 158 str. F0412]
 gi|313441551|gb|EFR59977.1| iron-only hydrogenase maturation rSAM protein HydE [Veillonella sp.
           oral taxon 158 str. F0412]
          Length = 372

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 43/295 (14%), Positives = 81/295 (27%), Gaps = 27/295 (9%)

Query: 124 VNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQ 183
           V  ++G           E  RF   V D D       +   +              +   
Sbjct: 3   VQDILGKDLVGDEWLTEEELRFLMSVTDEDELQLIYKKAYEVKAKYVKPVAYYRGLIEFS 62

Query: 184 EGCDKFCTFCVVPYTRGIEISRSL--SQVVDEARKLIDNGVCEITL----LGQNVNAWRG 237
             C K C +C +           +    ++  A+   D+    ITL       ++     
Sbjct: 63  NRCIKNCNYCGIRRENDKTERFDMNREDIIKMAQWAYDHEYGSITLQSGERSDDIFVDYV 122

Query: 238 KGLDGEKCTFSDLLYSLSEIKGLVRLR-YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQ 296
             L  +     D    ++   G      Y        S  L++       L   +H   +
Sbjct: 123 VDLIRDIKAIGDGSLGITMCVGEQSEEAYRRMREAGASRYLLRIETTNKELYHKIHPQDE 182

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
                        H+     + + R+R V     + +  ++G PG+T++D    +     
Sbjct: 183 L------------HSFETRVECLRRLRRV--GFQVGTGVMIGLPGQTEEDLVNDILFYRD 228

Query: 357 IGYAQAFSFKYSPRLGTP----GSNMLEQVDENVKAERLLCLQKKLREQQVSFND 407
           +         Y     TP       M   +D+     R + L  K+      F  
Sbjct: 229 MDIDMIGMGPYVVHHDTPLGQEALAMG--IDDEAGKLRRIQLGLKMIALTRLFLK 281


>gi|302534387|ref|ZP_07286729.1| radical SAM domain-containing protein [Streptomyces sp. C]
 gi|302443282|gb|EFL15098.1| radical SAM domain-containing protein [Streptomyces sp. C]
          Length = 647

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 57/322 (17%), Positives = 103/322 (31%), Gaps = 65/322 (20%)

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
             V+D D     K   + + +  + R       + I  GC + C FC           RS
Sbjct: 240 HTVMDLDEWPYPKQPLVPLAETVHERMS-----VEIFRGCTRGCRFCQAGMITRPVRERS 294

Query: 207 LSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI--KGLVRL 263
           ++ + +   K +   G  E+ LL  +           +    +D+   L++      V L
Sbjct: 295 ITGIGEMVEKGLKATGFEEVGLLSLSS---------ADHTEIADIAKGLADRYSDDKVGL 345

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR-- 321
              ++     +  L             L    + GS+R+ K +N+  +  +  + +    
Sbjct: 346 SLPSTRVDAFNVDLANELTRNGR-RSGLTFAPEGGSERMRKVINKMVSEEDLIRTVATAY 404

Query: 322 ---IRSVRPDIAISSDFIVGFPGETDDDFRATMDLV-------------DKIGYAQAFSF 365
               R V+        F+ G P ETD+D     D+              + I        
Sbjct: 405 GNGWRQVK------LYFMCGLPTETDEDVLQIGDMAVNVIAKGREVSGQNDIRCT-VSIG 457

Query: 366 KYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLR---------------------EQQVS 404
            + P+  TP      Q+       RL  L+ K+R                     E  +S
Sbjct: 458 GFVPKPHTP-FQWAPQLSAEETDARLGKLRDKIRGDKKYGRSIGFRYHDGKPGIVEGLLS 516

Query: 405 FNDACVGQIIEVLIEKHGKEKG 426
             D  +G +I  + E  G+  G
Sbjct: 517 RGDRRIGDVIRAVYEDGGRFDG 538


>gi|294629333|ref|ZP_06707893.1| radical SAM domain-containing protein [Streptomyces sp. e14]
 gi|292832666|gb|EFF91015.1| radical SAM domain-containing protein [Streptomyces sp. e14]
          Length = 650

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 54/325 (16%), Positives = 100/325 (30%), Gaps = 55/325 (16%)

Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
             V+D D     K   + + +  + R       + I  GC + C FC           RS
Sbjct: 240 HTVMDLDEWPYPKQPLVPLAETVHERMS-----VEIFRGCTRGCRFCQAGMITRPVRERS 294

Query: 207 LSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
           ++ + +     +   G  E+ LL     +       G+        Y   +I     L  
Sbjct: 295 ITGIGEMVEAGLKATGFEEVGLLS---LSSADHSEIGDIAKGLADRYEEDKIG----LSL 347

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR---- 321
            ++     +  L             L    + GS+R+ K +N+  +  +  + +      
Sbjct: 348 PSTRVDAFNVDLANELTRNGR-RSGLTFAPEGGSERMRKVINKMVSEEDLIRTVATAYGN 406

Query: 322 -IRSVRPDIAISSDFIVGFPGETDDDFRATMDLV-------------DKIGYAQAFSFKY 367
             R V+        F+ G P ETDDD     D+              + I         +
Sbjct: 407 GWRQVK------LYFMCGLPTETDDDVLQIADMATRVIAKGREVSGSNDIRCT-VSIGGF 459

Query: 368 SPRLGTPGSNMLEQVDENVKAERLLCLQKKL-------REQQVSFNDACVGQIIEVLIEK 420
            P+  TP      Q+       RL  L+ K+       R     ++D   G     ++E 
Sbjct: 460 VPKPHTP-FQWAPQLSAEETDARLQKLRDKIRGDKKYGRSIGFRYHDGKPG-----IVEG 513

Query: 421 HGKEKGKLVG---RSPWLQSVVLNS 442
                 + +G   R+ +      + 
Sbjct: 514 LLSRGDRRIGAVIRAVYDDGGRFDG 538


>gi|300871621|ref|YP_003786494.1| putative biotin synthase [Brachyspira pilosicoli 95/1000]
 gi|300689322|gb|ADK31993.1| putative biotin synthase [Brachyspira pilosicoli 95/1000]
          Length = 373

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/204 (14%), Positives = 62/204 (30%), Gaps = 23/204 (11%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGI-EISR-SLSQVVDEARKLIDNGVCEITLLGQNVNAW-- 235
           +     C   C +C +  +    E  R S   ++       + G     L G     +  
Sbjct: 80  IEFTNYCKNDCIYCGIRKSNKNSERYRLSKEDILSCCDIGYEIGFRTFVLQGGEDPYYSL 139

Query: 236 --RGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHL 293
                 +D  K  F D   +LS I    +  Y     +     L++ H   D +    H 
Sbjct: 140 ERMSDIVDAIKTKFPDSALTLS-IGEKEKKYYKVLKEKGADRFLLR-HETADNI----HY 193

Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
                 +  L            ++ +  ++ +       +  +VG P +T ++    +  
Sbjct: 194 SKLHPKNMSL---------DNRKECLRTLKKL--GYQTGTGIMVGSPYQTLENIADDLMF 242

Query: 354 VDKIGYAQAFSFKYSPRLGTPGSN 377
           + +I         + P   TP + 
Sbjct: 243 MQEINPEMIGIGPFLPHKDTPFAK 266


>gi|224436404|ref|ZP_03657424.1| hypothetical protein HcinC1_00595 [Helicobacter cinaedi CCUG 18818]
          Length = 320

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/111 (19%), Positives = 48/111 (43%), Gaps = 4/111 (3%)

Query: 273 MSDCLIKAHGDLDVLMP--YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330
           + D L++  G+        +L   +QS  D+ L+  NR H+    +++ ++ R+    + 
Sbjct: 145 VEDRLLELLGEYVKNGKEIWLEYGIQSVYDKTLELTNRAHSIAGAKEMFEKTRAK--GVK 202

Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
           + +  I G P ET +    ++D V + G             GT  + + ++
Sbjct: 203 VCAHLIYGLPEETPEMMLHSLDCVLEWGINGIKIHPLYVVNGTRLAKLYKE 253


>gi|125973447|ref|YP_001037357.1| radical SAM family protein [Clostridium thermocellum ATCC 27405]
 gi|256005343|ref|ZP_05430308.1| Radical SAM domain protein [Clostridium thermocellum DSM 2360]
 gi|281417647|ref|ZP_06248667.1| Radical SAM domain protein [Clostridium thermocellum JW20]
 gi|125713672|gb|ABN52164.1| Radical SAM [Clostridium thermocellum ATCC 27405]
 gi|255990662|gb|EEU00779.1| Radical SAM domain protein [Clostridium thermocellum DSM 2360]
 gi|281409049|gb|EFB39307.1| Radical SAM domain protein [Clostridium thermocellum JW20]
 gi|316940316|gb|ADU74350.1| Radical SAM domain protein [Clostridium thermocellum DSM 1313]
          Length = 338

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 33/205 (16%), Positives = 71/205 (34%), Gaps = 7/205 (3%)

Query: 176 VTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITL-LGQNVNA 234
           V       +GC   C +C   Y  G +   +  +++      ID+   +  + +G    +
Sbjct: 7   VIPIFIPHKGCPFDCIYCNQKYISGQKDDMTEEKMISIIESHIDSACEDTYIEIGFYGGS 66

Query: 235 WRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP 294
           + G   + +          + E  G V+    ++ P  +++ ++         +  + L 
Sbjct: 67  FTGIEREEQYRYLETANRYIKE--GKVKSIRLSTRPDYINEEILDYLEKYS--VKTIELG 122

Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
           VQS    +L+   R H+  +       I+       +    ++G PG++      T + V
Sbjct: 123 VQSLDREVLEKSCRGHSVEDVYNASALIKKR--GFVLGIQTMIGLPGDSRKKALHTAEEV 180

Query: 355 DKIGYAQAFSFKYSPRLGTPGSNML 379
            KI       +      GT    M 
Sbjct: 181 VKIKPDILRIYPTLVVRGTYLEKMY 205


>gi|330899463|gb|EGH30882.1| coproporphyrinogen III oxidase [Pseudomonas syringae pv. japonica
           str. M301072PT]
 gi|330976029|gb|EGH76095.1| coproporphyrinogen III oxidase [Pseudomonas syringae pv. aptata
           str. DSM 50252]
          Length = 460

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 77/220 (35%), Gaps = 15/220 (6%)

Query: 160 FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC----VVPYTRGIEIS---RSLSQVVD 212
           F+ L  +       R ++ ++ +   C   C +C    V+   RG   +   R   ++  
Sbjct: 38  FDLLHALRESRKASRPLSLYVHLPF-CANICYYCACNKVITKDRGRAQAYLQRLEHEIQM 96

Query: 213 EARKLI-DNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPR 271
            A  L     V ++ L G          L             L +  G   +        
Sbjct: 97  LACHLAPGQVVEQLHLGGGTPTFLSHDELRRLMAQLRLHFNLLDDDSGDYGIEIDPREAD 156

Query: 272 DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAI 331
             +  L++  G        + L VQ     + +++NR  +  E R I++  R+++   ++
Sbjct: 157 WSTMGLLRELG-----FNRVSLGVQDLDPTVQRAINRMQSLEETRAIVEAARTLQFR-SV 210

Query: 332 SSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
           + D I G P +    F  T+D V  +   +   F Y+   
Sbjct: 211 NIDLIYGLPTQNPQTFSHTVDKVIDLQPDRLSVFNYAHLP 250


>gi|319791353|ref|YP_004152993.1| radical SAM protein [Variovorax paradoxus EPS]
 gi|315593816|gb|ADU34882.1| Radical SAM domain protein [Variovorax paradoxus EPS]
          Length = 1405

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 46/215 (21%), Positives = 73/215 (33%), Gaps = 19/215 (8%)

Query: 172  RKRGVTAFLTIQEGCDKFCTFCVVPY-TRGIEISRSLSQVVDEARKLIDNGVC-EITLLG 229
            R R   A + + +GCD  C+FC       G E  R +  V+ E R+L        I  + 
Sbjct: 1053 RGRVHEAHIVMSKGCDWNCSFCTERRELSGGEERRDVESVLQEVRQLATKYASLRIQFID 1112

Query: 230  QNV-------NAWRGKGLDGEKCTFSDLLYSLSEIKGLV--RLRYTTSHPRDM--SDCLI 278
             N+       +   G   +  K      L  L +I+  +   L +      +   +  L+
Sbjct: 1113 DNLFPQIASPHNAGGVKREAGKTWAVQFLSGLKQIRDEMDGNLTWRGIFRLEDFAAYELL 1172

Query: 279  KAHGDLDVL-----MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR-PDIAIS 332
               G L  +        L   V+SG      S+      +    I    R +R   I   
Sbjct: 1173 GEAGGLVRVLTEAGCNMLAFGVESGVAARRHSIKAGGREFSNDAIARLFRRLRDAGIFSK 1232

Query: 333  SDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
            + FI+G   ET     AT+      G   A+   Y
Sbjct: 1233 AYFIIGGKKETAASTEATISFAVSCGATLAYFALY 1267


>gi|302391353|ref|YP_003827173.1| radical SAM domain protein [Acetohalobium arabaticum DSM 5501]
 gi|302203430|gb|ADL12108.1| Radical SAM domain protein [Acetohalobium arabaticum DSM 5501]
          Length = 615

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 53/238 (22%), Positives = 89/238 (37%), Gaps = 22/238 (9%)

Query: 144 RFGKRVV-DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
           R  KRVV D D S       +  +D  ++R       L +  GC + C FC    T    
Sbjct: 233 RITKRVVSDLDESYYPSRWIVPYMDIVHDRIN-----LEVARGCSRGCRFCQAGMTYRPV 287

Query: 203 ISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
             RS  ++ + A  LID  G  E+ L   + + +       EK     L+   SE++  V
Sbjct: 288 RERSQERLEELAADLIDQTGYEELGLTSLSTSDYSEIEELTEK-----LVKDYSELQ--V 340

Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
            L   +      S  L K    +      L    ++G+ R+   +N+  T  +  + +  
Sbjct: 341 GLSLPSLRAEPSSVELAKKVQKVKK--TGLTFAPEAGTQRLRDVINKGVTENDLMEAVQA 398

Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG-----YAQAFSFKYSPRLGTP 374
                    +   F++G P ET+DD    + L  K+        +     + P+  TP
Sbjct: 399 AYDAGWQ-RVKLYFMIGLPTETEDDLAGIVKLAKKVAAVGKLKVKVGVSTFIPKPYTP 455


>gi|262038085|ref|ZP_06011490.1| quinone-reactive Ni/Fe hydrogenase, large subunit [Leptotrichia
           goodfellowii F0264]
 gi|261747905|gb|EEY35339.1| quinone-reactive Ni/Fe hydrogenase, large subunit [Leptotrichia
           goodfellowii F0264]
          Length = 414

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 33/214 (15%), Positives = 80/214 (37%), Gaps = 22/214 (10%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           CDK C+FC        ++   L    D   K  +       +  + ++A    G  G   
Sbjct: 54  CDKICSFC---NLNRKQLDNDLEDYTDFLIKEFEKYGKTDYMKSKKLDAAFFGG--GTPT 108

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL-------MPYLHLPVQSG 298
              +  + + +I   ++  Y  +   + +      + +   L       +  L + +QS 
Sbjct: 109 ILRE--HQIEKILKCIKQNYNFTEDYEFTFESTLHNLNDKKLEILQKNGVNRLSIGIQSF 166

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           S +   ++NR +T  E  + + +++     + +  D I  +P ET ++     D++  + 
Sbjct: 167 SPKGRDTLNRTYTKEETVKRLKKVKDNFDGL-VCIDIIYNYPEETVEEATEDADIIADLK 225

Query: 359 YAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLL 392
              +  +      G+       ++ +++K  RL 
Sbjct: 226 LDSSSFYSLIIFDGS-------KMSKDIKENRLE 252


>gi|323341658|ref|ZP_08081891.1| coproporphyrinogen dehydrogenase [Erysipelothrix rhusiopathiae ATCC
           19414]
 gi|322464083|gb|EFY09276.1| coproporphyrinogen dehydrogenase [Erysipelothrix rhusiopathiae ATCC
           19414]
          Length = 366

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/192 (16%), Positives = 72/192 (37%), Gaps = 19/192 (9%)

Query: 186 CDKFCTFCV-VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR---GKGLD 241
           CD  C +C    +    +IS           + +   + +I +L  ++       G    
Sbjct: 13  CDHICGYCDFTRFHYARQIS----------DQFMIRLIQQINVLPGDLKTIYVGGGTPTS 62

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
            E      LL +L              +P ++++  ++   +    +  + L VQ+  D 
Sbjct: 63  LENDQLEALLKALKPKLADEYEWTFEGNPENLTEENVQMLHNYG--VNRMSLGVQTTHDD 120

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSV-RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
           +L+ + R H  Y+    +  +R +   +I++  D + G PG++ + F ++M  V  +   
Sbjct: 121 LLEKIGRHHKFYDVEVGVKLLRKIGIENISL--DLMYGLPGQSLESFESSMRDVIALKPD 178

Query: 361 QAFSFKYSPRLG 372
               +  +    
Sbjct: 179 HVSIYALTVEPN 190


>gi|253689126|ref|YP_003018316.1| Coproporphyrinogen dehydrogenase [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|251755704|gb|ACT13780.1| Coproporphyrinogen dehydrogenase [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 437

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 37/218 (16%), Positives = 70/218 (32%), Gaps = 23/218 (10%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C   CTFC   + +                + +   +        + +A       G   
Sbjct: 63  CATHCTFCG--FYQNKLR----DDSTATYTRYLLQELAMEADSPLHQSAPIHAVYFGGGT 116

Query: 246 TFSDLLYSLSEIKGLVRLRYTTS---------HPRDMSDCLIKAHGDLDVLMPYLHLPVQ 296
             +     LS+I   +R     +            D  D  I A   LD       + +Q
Sbjct: 117 PTALAADELSQIIRAIRTSLPLAPDCEITVEGRAMDFDDERIDAC--LDAGANRFSIGIQ 174

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
           +   RI + M R     +  + ++R+   R   A+  D + G P +T + +R  + +V  
Sbjct: 175 TFDTRIRQRMARTSDKQQSIRFLERLCE-RDRAAVVCDLMFGLPEQTPEIWREDLAIVSD 233

Query: 357 IGYAQAFSFKYSPRLGTPGSNMLEQ----VDENVKAER 390
           +       +  +    TP +   E     +  +V A R
Sbjct: 234 LPLDGVDLYALNLLPTTPLAKAAENQRVALP-DVVARR 270


>gi|227326144|ref|ZP_03830168.1| coproporphyrinogen III oxidase [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 437

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 37/218 (16%), Positives = 70/218 (32%), Gaps = 23/218 (10%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C   CTFC   + +                + +   +        + +A       G   
Sbjct: 63  CATHCTFCG--FYQNKLR----DDSTATYTRYLLQELAMEADSPLHQSAPIHAVYFGGGT 116

Query: 246 TFSDLLYSLSEIKGLVRLRYTTS---------HPRDMSDCLIKAHGDLDVLMPYLHLPVQ 296
             +     LS+I   +R     +            D  D  I A   LD       + +Q
Sbjct: 117 PTALAADELSQIIRAIRTSLPLAPDCEITVEGRAMDFDDERIDAC--LDAGANRFSIGIQ 174

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
           +   RI + M R     +  + ++R+   R   A+  D + G P +T + +R  + +V  
Sbjct: 175 TFDTRIRQRMARTSDKQQSIRFLERLCE-RDRAAVVCDLMFGLPEQTPEIWREDLAIVSD 233

Query: 357 IGYAQAFSFKYSPRLGTPGSNMLEQ----VDENVKAER 390
           +       +  +    TP +   E     +  +V A R
Sbjct: 234 LPLDGVDLYALNLLPTTPLAKAAENQRVALP-DVVARR 270


>gi|295130395|ref|YP_003581058.1| radical SAM domain protein [Propionibacterium acnes SK137]
 gi|291375493|gb|ADD99347.1| radical SAM domain protein [Propionibacterium acnes SK137]
 gi|313772476|gb|EFS38442.1| radical SAM domain protein [Propionibacterium acnes HL074PA1]
 gi|313809817|gb|EFS47538.1| radical SAM domain protein [Propionibacterium acnes HL083PA1]
 gi|313830730|gb|EFS68444.1| radical SAM domain protein [Propionibacterium acnes HL007PA1]
 gi|313833948|gb|EFS71662.1| radical SAM domain protein [Propionibacterium acnes HL056PA1]
 gi|314973156|gb|EFT17252.1| radical SAM domain protein [Propionibacterium acnes HL053PA1]
 gi|314976325|gb|EFT20420.1| radical SAM domain protein [Propionibacterium acnes HL045PA1]
 gi|314983466|gb|EFT27558.1| radical SAM domain protein [Propionibacterium acnes HL005PA1]
 gi|315096351|gb|EFT68327.1| radical SAM domain protein [Propionibacterium acnes HL038PA1]
 gi|327325984|gb|EGE67774.1| radical SAM domain protein [Propionibacterium acnes HL096PA2]
 gi|327446136|gb|EGE92790.1| radical SAM domain protein [Propionibacterium acnes HL043PA2]
 gi|327447885|gb|EGE94539.1| radical SAM domain protein [Propionibacterium acnes HL043PA1]
 gi|328760517|gb|EGF74085.1| radical SAM domain protein [Propionibacterium acnes HL099PA1]
          Length = 650

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 61/386 (15%), Positives = 113/386 (29%), Gaps = 54/386 (13%)

Query: 71  HIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGP 130
            +     E        IR+ K      G + L+V                  + +  +G 
Sbjct: 166 AVLGDGEEACLEISEIIRDWKKEGCPGGREGLLVRLAATGGIYVPCFYDVEYLDDGTIGK 225

Query: 131 QTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190
               RL            V+D D     K   + + +  + R       + I  GC + C
Sbjct: 226 VAPNRLEA--PYTVSKHTVMDLDEWQYPKRPIVPVAETVHERYS-----VEIFRGCTRGC 278

Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFSD 249
            FC           RS+  +       +   G+ E+ LL   +++     +       +D
Sbjct: 279 RFCQAGMITRPVRERSIDAIAQMVDGGLQATGLEEVGLLS--LSSADHSEISDITKGLAD 336

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
                      V L   ++     +  L             L    + GS+R+ + +N++
Sbjct: 337 RYE-----GTNVSLSLPSTRVDTFNIDLANELSRNGR-RSGLTFAPEGGSERMRRVINKK 390

Query: 310 HTAYEYRQIIDR-----IRSVRPDIAISSDFIVGFPGETDDDFRATMDLV---------- 354
            T  +  + +        R ++        F+ G P ETD+D     D+           
Sbjct: 391 VTEEDLIRTVATAFGNGWRQIK------LYFMCGLPTETDEDVLGIHDMASHVVAAGRAA 444

Query: 355 ---DKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLRE-------QQVS 404
                I         + P+  TP      Q   +    RL  L+  +R          + 
Sbjct: 445 AGRKDIRCT-ISIGGFVPKPHTP-FQWAAQASADEVDHRLSVLRDSIRADRQFGRSIGMR 502

Query: 405 FNDACVGQIIEVLIEKHGKEKGKLVG 430
           ++D   G     +IE       + VG
Sbjct: 503 YHDGRPG-----IIEGLLSRGDRRVG 523


>gi|194874899|ref|XP_001973489.1| GG13311 [Drosophila erecta]
 gi|306755878|sp|B3NIL9|LIAS_DROER RecName: Full=Lipoyl synthase, mitochondrial; AltName: Full=Lipoate
           synthase; Short=LS; Short=Lip-syn; AltName: Full=Lipoic
           acid synthase; Flags: Precursor
 gi|190655272|gb|EDV52515.1| GG13311 [Drosophila erecta]
          Length = 379

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/186 (14%), Positives = 62/186 (33%), Gaps = 15/186 (8%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQV---VDEARKLIDNGVCEITLLGQNVNAWRGKGLDG 242
           C + C FC V   R          V   V+ A  +   G+  I L   +    R    DG
Sbjct: 137 CTRGCRFCSVKTARRP----PPLDVNEPVNTATAIASWGLDYIVLTSVD----RDDLPDG 188

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
                ++ +  +      + +       R  +   ++   +  + +   ++         
Sbjct: 189 GSKHIAETVREIKARNSNIFVECLVPDFRG-NLECVETIANSGLDVYAHNIETVEKLTPY 247

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           ++     +   +  Q++   +   P++   S  ++G  GETD +   T+  + + G    
Sbjct: 248 VRDRRAHYR--QTLQVLTEAKRFNPNLITKSSIMLGL-GETDGEIECTLKDLREAGVDCV 304

Query: 363 FSFKYS 368
              +Y 
Sbjct: 305 TLGQYM 310


>gi|118464691|ref|YP_881474.1| lipoyl synthase [Mycobacterium avium 104]
 gi|166230422|sp|A0QEY6|LIPA_MYCA1 RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|118165978|gb|ABK66875.1| lipoic acid synthetase [Mycobacterium avium 104]
          Length = 307

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 46/250 (18%), Positives = 89/250 (35%), Gaps = 25/250 (10%)

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQ-EGCDKFCTFCVVPYTRGIEISRS-LSQVV 211
           ++V ++    +I +   +R+    A   I  + C + C FC +   +  E+ R    +V 
Sbjct: 52  HTVCEEAGCPNIFECWEDRE----ATFLIGGDQCTRRCDFCQIDTGKPAELDRDEPRRVA 107

Query: 212 DEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPR 271
           D  R +   G+   T+ G      R    DG    +++ + ++ E+     +        
Sbjct: 108 DSVRTM---GLRYATVTGV----ARDDLPDGGAWLYAETVRAIKELNPSTGVELLIPDFN 160

Query: 272 DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAI 331
              D L +  G    ++ +    V     RI K +    T      ++   R     +  
Sbjct: 161 GRPDRLAEVFGSRPEVLAHNVETV----PRIFKRIRPAFTYRRSLDVLTAAREA--GLVT 214

Query: 332 SSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERL 391
            S+ I+G  GET D+ R  +  +   G       +Y      P +     V+  VK E  
Sbjct: 215 KSNLILGL-GETPDEVRTALADLRGAGCDIITITQYLR----PSARHHP-VERWVKPEEF 268

Query: 392 LCLQKKLREQ 401
           +   +   E 
Sbjct: 269 VEFARHAEEL 278


>gi|86160058|ref|YP_466843.1| radical SAM family protein [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85776569|gb|ABC83406.1| Radical SAM [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 589

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 64/166 (38%), Gaps = 17/166 (10%)

Query: 182 IQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD 241
           +  GC   C FC   + +       L ++  E R+ I  G   I L+G + + + G    
Sbjct: 244 VARGCLWGCRFCAAGFVQRPYREVDLERLRAEVREGIARGQR-IGLIGPDTSDYTG---- 298

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
                   L   + E  G      ++     ++  L +   +       + +  ++G+++
Sbjct: 299 -----LDALTCFIGEQGGTFSP--SSLRVDAITTPLARRMAEGGE--RSITIAPEAGTEK 349

Query: 302 ILKSMNRRHTAYEYRQIID-RIRSVRPDIAISSDFIVGFPGETDDD 346
           + + +N+  T  +  Q  +  +      + +   F+ G P ETDDD
Sbjct: 350 MRRVINKDFTDDQIVQAAENALSQGMQHVKMY--FMCGLPAETDDD 393


>gi|24376202|ref|NP_720246.1| coproporphyrinogen III oxidase [Shewanella oneidensis MR-1]
 gi|24351257|gb|AAN57689.1|AE015905_1 oxygen-independent coproporphyrinogen III oxidase [Shewanella
           oneidensis MR-1]
          Length = 458

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 36/236 (15%), Positives = 78/236 (33%), Gaps = 21/236 (8%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C K C +C         I+R   +       L    +    L           G  G   
Sbjct: 63  CAKLCYYC----GCNKVITRHAHKADQYIEYLSHEIIKRAPLFKHYSVTQMHWG--GGTP 116

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL-------MPYLHLPVQSG 298
           TF      + ++  L++  +  +   + S  +     +L +L          + + VQ  
Sbjct: 117 TF-LNPEQIIKLTALIKANFNFADEGEFSIEVDPREIELSMLDTLKEAGFNRISIGVQDF 175

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           +  +  ++NR         ++ + ++    ++ + D I G P +T + F ATM  V  + 
Sbjct: 176 NKEVQVAVNREQDEQFIFDLMAKAKA-MGFVSTNIDLIYGLPHQTPETFAATMQRVLDLS 234

Query: 359 YAQAFSFKYSPRLGTPGSNM---LEQVDENVKAERLLCLQKKLREQQVSFNDACVG 411
             +   F Y+       +      E +      ++L  L + +     +     +G
Sbjct: 235 PDRLSVFNYAHLPARFAAQRKIKDEHLPSP--KQKLEMLHQTIETLTGAGYQ-YIG 287


>gi|87306628|ref|ZP_01088775.1| lipoyl synthase [Blastopirellula marina DSM 3645]
 gi|87290807|gb|EAQ82694.1| lipoyl synthase [Blastopirellula marina DSM 3645]
          Length = 312

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/187 (15%), Positives = 67/187 (35%), Gaps = 20/187 (10%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C+FC VP  +  E+S    +    A      G+  + +        R    DG   
Sbjct: 87  CTRACSFCSVPRGKPEELS--SDEPERLAEAAFRLGLKHVVITSVT----RDDLPDGGAQ 140

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
            +   + ++ E  G        +    ++   I +   LD ++      V + +   +  
Sbjct: 141 HYIRCIEAVRERTG--------ATVEVLTPDFIHSKESLDKIIVDASPDVFNHNTETVPR 192

Query: 306 MNRRHTA-----YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
           + +R             ++ R++++ P +   S  ++G  GET ++  A ++ +      
Sbjct: 193 LYKRVRGPKSEYAWTLGLLKRVKALNPKVKTKSGLMLGL-GETHEEVFAVLEDLRANDVD 251

Query: 361 QAFSFKY 367
                +Y
Sbjct: 252 FLTLGQY 258


>gi|313681354|ref|YP_004059092.1| hypothetical protein Sulku_0225 [Sulfuricurvum kujiense DSM 16994]
 gi|313154214|gb|ADR32892.1| conserved hypothetical protein [Sulfuricurvum kujiense DSM 16994]
          Length = 320

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/101 (21%), Positives = 38/101 (37%), Gaps = 7/101 (6%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           ++   +QS  D  L+ +NR H +   ++ I + +S    + +    I G PGET +    
Sbjct: 164 WIEFGIQSIYDTTLERINRGHDSANVKEAIRKAKSY--GLNVCGHLIFGLPGETKEMMLE 221

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTPGSNML-----EQVDEN 385
           T      +G              T  +N       E +DE 
Sbjct: 222 TAKEAYALGIDSVKYHPLYVVKRTALANEYARGEFEPIDEE 262


>gi|296112550|ref|YP_003626488.1| lipoic acid synthetase [Moraxella catarrhalis RH4]
 gi|295920244|gb|ADG60595.1| lipoic acid synthetase [Moraxella catarrhalis RH4]
 gi|326577778|gb|EGE27651.1| lipoyl synthase [Moraxella catarrhalis O35E]
          Length = 354

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 68/208 (32%), Gaps = 12/208 (5%)

Query: 161 ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN 220
           E  +  +       G   F+ + + C + C FC V + R   +     +    A  ++  
Sbjct: 76  EEAACPNLPQCFGDGTATFMIMGDICTRRCPFCEVAHGRPNPL--DKDEPKHTAETILGL 133

Query: 221 GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKA 280
           G+    +   +    R    DG    F D++     +     +       R      +  
Sbjct: 134 GLKYAVITSVD----RDDLKDGGAGHFVDVINESKALSPNCLIEILVPDFRGREQVALDL 189

Query: 281 HGDL-DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGF 339
                  +  +    V     R+ K+            ++   ++ RPD+A    F+VG 
Sbjct: 190 LTQTAPDVFNHNIETV----PRLYKAFRPGSDYQHSLNLLKEYKARRPDVATKCGFMVGL 245

Query: 340 PGETDDDFRATMDLVDKIGYAQAFSFKY 367
            GET+D+  A +D +           +Y
Sbjct: 246 -GETEDEVYALLDDLKAHDVDIITIGQY 272


>gi|291539588|emb|CBL12699.1| Coproporphyrinogen III oxidase and related Fe-S oxidoreductases
           [Roseburia intestinalis XB6B4]
          Length = 506

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 36/216 (16%), Positives = 78/216 (36%), Gaps = 16/216 (7%)

Query: 158 DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR--SLSQVVDEAR 215
           D  ER + +    +   G + ++ I   C   C +C   +T    +S    +   +D   
Sbjct: 164 DIAERENAILKKIDYDNGYSLYIGIPF-CPTTCLYC--SFTSYPLVSWKNRVDAYLDALE 220

Query: 216 KLIDNGVCEITLLGQNVNAWR---GKGLDGEKCTFSDLLYSLS---EIKGLVRLRYTTSH 269
           + ID          +N+N+     G     E      L+  +    ++   +        
Sbjct: 221 REID--YTAAKFYHKNLNSIYIGGGTPTTLEPYQLDRLIRKIKCSFDLSDCLEFTVEAGR 278

Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329
           P  ++   ++      +    + +  Q+   R L  + RRH+  +  +     R +  D 
Sbjct: 279 PDSITREKLEVLRKWGI--TRISINPQTMQQRTLDLIGRRHSVEQTVESFKIARELGFD- 335

Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
            I+ D I+G P E+ +D R T++ + ++        
Sbjct: 336 DINMDLIMGLPEESLEDVRDTLEQIMQLKPDNLTVH 371


>gi|288800021|ref|ZP_06405480.1| radical SAM protein [Prevotella sp. oral taxon 299 str. F0039]
 gi|288333269|gb|EFC71748.1| radical SAM protein [Prevotella sp. oral taxon 299 str. F0039]
          Length = 305

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/206 (15%), Positives = 72/206 (34%), Gaps = 12/206 (5%)

Query: 181 TIQEGCDKFCTFCVVPYTRGIEISR--SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK 238
           TI  G    CT+C           +  S+++ ++  ++       ++  L          
Sbjct: 39  TIARG---GCTYCDNRTFNPSYCHKRDSVTEQLEAGKRFFGKKYPDMKYLAYFQAYTNTY 95

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL-DVLMPYLHLPVQS 297
               +  T  +   ++S++ GLV      + P  +SD L+    +L       +   +++
Sbjct: 96  SPTSKLRTMYEEALAVSDVVGLV----IGTRPDCVSDELLDYLQELNKKTFVLVEYGIET 151

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
            +++ L+ +NR H+       I R +     I      I+G PGE   +      ++  +
Sbjct: 152 TNNKTLERINRGHSFECSVDAIKRTKER--GILTGGHIILGLPGEDLQESIQQAKIISLL 209

Query: 358 GYAQAFSFKYSPRLGTPGSNMLEQVD 383
                   +     GT  +    +  
Sbjct: 210 PLDILKIHQMQIIRGTKLAKEWNEEP 235


>gi|253571980|ref|ZP_04849385.1| biotin synthase [Bacteroides sp. 1_1_6]
 gi|251838577|gb|EES66663.1| biotin synthase [Bacteroides sp. 1_1_6]
          Length = 345

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/214 (14%), Positives = 64/214 (29%), Gaps = 37/214 (17%)

Query: 176 VTAFLTIQEGCDKFCTFCVVPYTRGI-EISR-SLSQVVDEARKLIDNGVCEITLLGQNVN 233
           +   + +   C   C +C +       E  R S   +++  ++  D G     L G    
Sbjct: 52  IRGLIEVSNCCRNNCYYCGIRKGNPNLERYRLSTENILNCCKQGYDLGFRTFVLQG---- 107

Query: 234 AWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHL 293
                   GE    +D    + +I   +R  Y                   +        
Sbjct: 108 --------GEDPVLTD--ERIEDIVSTIRRSYPDCAI---------TLSLGEKSREAYER 148

Query: 294 PVQSGSDRILKSMNRRHTAYEY----------RQIIDRIRSVRP-DIAISSDFIVGFPGE 342
             Q+G++R L   +  +    Y             +  +R ++       +  +VG PG+
Sbjct: 149 FFQAGANRYL-LRHETYDKEHYQQLHPTGMSCEHRLQCLRDLKDIGYQTGTGIMVGSPGQ 207

Query: 343 TDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
           T       +  ++++         + P   TP +
Sbjct: 208 TIKHLIQDILFIEQLRPEMIGIGPFLPHGETPFA 241


>gi|221124173|ref|XP_002154113.1| PREDICTED: similar to Lipoyl synthase, mitochondrial isoform 1
           [Hydra magnipapillata]
          Length = 365

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 41/234 (17%), Positives = 87/234 (37%), Gaps = 15/234 (6%)

Query: 156 VEDKFERLSIVDGGYNRKRGVTAFLTI-QEGCDKFCTFCVVPYTRGIEISRSLSQVVDEA 214
           V ++ +  +I +    ++   TA + I  + C + C FC V  +R        ++ ++ A
Sbjct: 100 VCEEAKCPNIGECWGGKEGTATATIMILGDTCTRGCRFCSVKTSRQPPA-LDPNEPINTA 158

Query: 215 RKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMS 274
           + +    +  I +   +    R    DG    F+  +  +  +   + +   T       
Sbjct: 159 KAISSWNLNYIVITSVD----RDDLPDGGSSHFAKTVQEVKRLNPNLIVECLTPDFAG-E 213

Query: 275 DCLIKAHGDLDV-LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
             LI       V +  +    V+S +  +      R T  +   +++ +++  P I   S
Sbjct: 214 KKLISTVASSGVDVYAHNIETVESLTWFVRD---PRATYKQSLSVLEHVKTNFPKILTKS 270

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG-SNMLEQVDENV 386
             +VGF  E  ++   TM  +  +G       +Y     T G + + E V   V
Sbjct: 271 SIMVGFG-EKREEVVTTMKDLRNVGVDCITIGQYM--QPTKGHAKVKEYVHPEV 321


>gi|307153863|ref|YP_003889247.1| lipoic acid synthetase [Cyanothece sp. PCC 7822]
 gi|306984091|gb|ADN15972.1| lipoic acid synthetase [Cyanothece sp. PCC 7822]
          Length = 289

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/222 (15%), Positives = 74/222 (33%), Gaps = 14/222 (6%)

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
           + +  D ++    E  S  + G     G   FL +   C + C +C + + +       L
Sbjct: 22  KEILRDLALNTVCEEASCPNIGECFNAGTATFLIMGPACTRACPYCDIDFEKKPL---PL 78

Query: 208 S--QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
              + +  A  +    +  + +   N    R    DG    F   +  +  I  L  +  
Sbjct: 79  DATEPLRLAEAVQRLKLNHVVITSVN----RDDLPDGGANQFVRCIEEVRRISPLTTIEV 134

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
                    + L         ++ +    +     R+ + +  +       +++ R R +
Sbjct: 135 LIPDLCGNWEALAVILQAKPEVLNHNTETI----PRLYRRVRPQGNYQRSLELLQRTREI 190

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
            P +   S  +VG  GETD + R  M  + K+        +Y
Sbjct: 191 APQVYTKSGIMVGL-GETDAEVREVMQDLRKVDCDILTIGQY 231


>gi|169629029|ref|YP_001702678.1| lipoyl synthase [Mycobacterium abscessus ATCC 19977]
 gi|169240996|emb|CAM62024.1| Probable lipoic acid synthetase LipA [Mycobacterium abscessus]
          Length = 329

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 41/247 (16%), Positives = 85/247 (34%), Gaps = 29/247 (11%)

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQ-EGCDKFCTFCVVPYTRGIEISRSLSQVVD 212
           ++V ++    +I +   +R+    A   I  E C + C FC +    G        +   
Sbjct: 49  HTVCEEAGCPNIFECWEDRE----ATFLIGGEQCTRRCDFCQI--DTGKPADLDRDEPRR 102

Query: 213 EARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
            A  +   G+   T+ G      R    DG    +++ +  + ++     +         
Sbjct: 103 VAESVHTMGLRYSTVTGV----ARDDLPDGGAWLYAETVRYIKDLNPATGVELLIPDFNA 158

Query: 273 MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAIS 332
           +   L +       ++ +    V     R+ + +    +      +I   R     +   
Sbjct: 159 IPAQLDEVFASRPEVLAHNLETV----PRVFRRIRPAFSYERSLSVITAAREA--QLVTK 212

Query: 333 SDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY---SPRLGTPGSNMLEQVDENVKAE 389
           S+ I+G  GET+D+ R  +  + + G       +Y   SPR           VD  VK +
Sbjct: 213 SNLILGM-GETNDEIREALVALHEAGCDIITITQYLRPSPRHH--------PVDRWVKPQ 263

Query: 390 RLLCLQK 396
             + L +
Sbjct: 264 EFVELSE 270


>gi|33866678|ref|NP_898237.1| hypothetical protein SYNW2146 [Synechococcus sp. WH 8102]
 gi|33633456|emb|CAE08661.1| conserved hypothetical protein [Synechococcus sp. WH 8102]
          Length = 875

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 43/253 (16%), Positives = 84/253 (33%), Gaps = 32/253 (12%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGK 238
           + I+ GC + C FC                V++     +   G  + +LL          
Sbjct: 270 VEIRRGCTRGCRFCQPGMLTRPARDVEPEAVIEAVENGMKQTGYSDFSLLS-----LSCS 324

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
                     +L   L+     V L+  +       D +    G        L    ++G
Sbjct: 325 DYLALPAVGVELRNRLA--DQNVTLQLPSQRVDRFDDDIAHILGGTRQA--GLTFAPEAG 380

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPD--IAISSDFIVGFPGETDDD---FRATMDL 353
           + R+   +N+  T      ++  IR+   +    +   F++G PGETD D      T  +
Sbjct: 381 TQRLRDIVNKGLTDD---DLLHGIRTAMENGYRKVKLYFMIGLPGETDADVLGIADTCVM 437

Query: 354 VDKIGYA------QAFSFKYSPRLGTPGSNMLEQVDENVKA--------ERLLCLQKKLR 399
           + +                ++P+  TP        DE ++         +RL  L+    
Sbjct: 438 LQQRCRDLGRLNLNITISNFTPKPHTPFQWHSVSTDEFLRRQDLLRGSFQRLRGLKVNFT 497

Query: 400 EQQVSFNDACVGQ 412
           + ++S  +  VG+
Sbjct: 498 DARLSAMEDFVGR 510


>gi|21672795|ref|NP_660862.1| hypothetical protein BUsg532 [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
 gi|25091668|sp|Q8K928|Y532_BUCAP RecName: Full=Oxygen-independent coproporphyrinogen-III
           oxidase-like protein BUsg_532
 gi|21623444|gb|AAM68073.1| hypothetical 42.6 kDa protein [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
          Length = 376

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/208 (14%), Positives = 71/208 (34%), Gaps = 18/208 (8%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQ-NVNAWRGKGLDGEK 244
           C K C +C   +   +  S    +  +    L+ +   +++L+ +  +N+    G     
Sbjct: 16  CIKKCGYCD--FYSYVNKSFIPEK--EYIDHLLKDLEKDLSLIKEREINSIFIGGGTPSL 71

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY-------LHLPVQS 297
              S +   + EIK     R   S+  +++        +      Y         + VQ+
Sbjct: 72  LKSSSIKKMMREIKK----RINISNTAEITIEANPTTLEYKRFFNYKKSGINRFSIGVQT 127

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
            +  +LK + R +   E    ++ I+ +  +  +  D + G P ++  D    +    K 
Sbjct: 128 FNSDLLKKIERTYNKREAILAVEEIKKINKNFNL--DIMYGLPNQSLKDVLLDLQYAVKY 185

Query: 358 GYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
                  ++ +    TP       +   
Sbjct: 186 NPTHISWYQLTLEPNTPFYVKKLNLPNE 213


>gi|293413301|ref|ZP_06655962.1| oxygen-independent coproporphyrinogen III oxidase [Escherichia coli
           B354]
 gi|291468049|gb|EFF10547.1| oxygen-independent coproporphyrinogen III oxidase [Escherichia coli
           B354]
          Length = 457

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 44/269 (16%), Positives = 90/269 (33%), Gaps = 30/269 (11%)

Query: 157 EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS-------LSQ 209
           ED  E+  +       +R ++ ++ I   C K C FC        +  ++         +
Sbjct: 34  EDFGEQAFLQAVARYPERPLSLYVHIPF-CHKLCYFCGCNKIVTRQQHKADQYLDALEQE 92

Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE-----IKGLVRLR 264
           +V  A       V ++   G       G      K   S L+  L E         + + 
Sbjct: 93  IVHRAPLFAGRKVSQLHWGG-------GTPTYLNKAQISRLMKLLRENFQFNADAEISIE 145

Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324
                PR++   ++            L + VQ  +  + + +NR         +++  R 
Sbjct: 146 V---DPREIELDVLDHLRAEG--FNRLSMGVQDFNKEVQRLVNREQDEEFIFALLNHARE 200

Query: 325 VRPDIAISS-DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQV 382
           +      ++ D I G P +T   F  T+  V ++   +   F Y+       +   ++  
Sbjct: 201 I--GFTSTNIDLIYGLPKQTPKSFAFTLKRVAELNPDRLSVFNYAHLPTIFAAQRKIKDA 258

Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVG 411
           D     ++L  LQ+ +     S     +G
Sbjct: 259 DLPSPQQKLDILQETIAFLTQSGYQ-FIG 286


>gi|188534486|ref|YP_001908283.1| lipoyl synthase [Erwinia tasmaniensis Et1/99]
 gi|238689710|sp|B2VBK1|LIPA_ERWT9 RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|188029528|emb|CAO97405.1| Lipoyl synthase [Erwinia tasmaniensis Et1/99]
          Length = 321

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/183 (16%), Positives = 66/183 (36%), Gaps = 12/183 (6%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V    G   +   ++    A+ + D  +  + +   +    R    DG   
Sbjct: 94  CTRRCPFCDV--AHGRPTTPDANEPGKLAQTIADMALRYVVITSVD----RDDLRDGGAQ 147

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAH-GDLDVLMPYLHLPVQSGSDRILK 304
            F+D + ++ E    +++       R   D  ++        +  +    V     R+ +
Sbjct: 148 HFADCISAIREKSPTIKIETLVPDFRGRMDRALEILNATPPDVFNHNLENV----PRVYR 203

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
            +          ++++R +   P+I   S  +VG  GET+ +    M  + + G      
Sbjct: 204 QVRPGANYDWSLKLLERFKEAHPEIPTKSGLMVGL-GETNAEIVEVMRDLRRHGVTMLTL 262

Query: 365 FKY 367
            +Y
Sbjct: 263 GQY 265


>gi|49484007|ref|YP_041231.1| hypothetical protein SAR1845 [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|257425873|ref|ZP_05602297.1| TIGR01212 family radical SAM protein [Staphylococcus aureus subsp.
           aureus 55/2053]
 gi|257428540|ref|ZP_05604938.1| TIGR01212 family radical SAM protein [Staphylococcus aureus subsp.
           aureus 65-1322]
 gi|257431174|ref|ZP_05607551.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257433855|ref|ZP_05610213.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257436772|ref|ZP_05612816.1| radical SAM protein [Staphylococcus aureus subsp. aureus M876]
 gi|282904335|ref|ZP_06312223.1| radical SAM protein, family [Staphylococcus aureus subsp. aureus
           C160]
 gi|282906160|ref|ZP_06314015.1| radical SAM protein [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282909077|ref|ZP_06316895.1| radical SAM superfamily enzyme [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282911385|ref|ZP_06319187.1| radical SAM superfamily enzyme [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282914554|ref|ZP_06322340.1| Fe-S oxidoreductase [Staphylococcus aureus subsp. aureus M899]
 gi|282917020|ref|ZP_06324778.1| radical SAM protein [Staphylococcus aureus subsp. aureus D139]
 gi|282919522|ref|ZP_06327257.1| radical SAM protein [Staphylococcus aureus subsp. aureus C427]
 gi|282924900|ref|ZP_06332566.1| TIGR01212 family radical SAM protein [Staphylococcus aureus subsp.
           aureus C101]
 gi|283770838|ref|ZP_06343730.1| radical SAM superfamily enzyme [Staphylococcus aureus subsp. aureus
           H19]
 gi|283958513|ref|ZP_06375964.1| radical SAM family protein [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|293503632|ref|ZP_06667479.1| TIGR01212 family radical SAM protein [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|293510648|ref|ZP_06669353.1| TIGR01212 family radical SAM protein [Staphylococcus aureus subsp.
           aureus M809]
 gi|293537189|ref|ZP_06671869.1| Fe-S oxidoreductase [Staphylococcus aureus subsp. aureus M1015]
 gi|295428336|ref|ZP_06820965.1| radical SAM protein [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297590700|ref|ZP_06949338.1| radical SAM protein [Staphylococcus aureus subsp. aureus MN8]
 gi|49242136|emb|CAG40836.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|257271567|gb|EEV03713.1| TIGR01212 family radical SAM protein [Staphylococcus aureus subsp.
           aureus 55/2053]
 gi|257275381|gb|EEV06868.1| TIGR01212 family radical SAM protein [Staphylococcus aureus subsp.
           aureus 65-1322]
 gi|257278122|gb|EEV08770.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257281948|gb|EEV12085.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257284123|gb|EEV14246.1| radical SAM protein [Staphylococcus aureus subsp. aureus M876]
 gi|282313266|gb|EFB43662.1| TIGR01212 family radical SAM protein [Staphylococcus aureus subsp.
           aureus C101]
 gi|282317332|gb|EFB47706.1| radical SAM protein [Staphylococcus aureus subsp. aureus C427]
 gi|282319507|gb|EFB49859.1| radical SAM protein [Staphylococcus aureus subsp. aureus D139]
 gi|282321735|gb|EFB52060.1| Fe-S oxidoreductase [Staphylococcus aureus subsp. aureus M899]
 gi|282325080|gb|EFB55390.1| radical SAM superfamily enzyme [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282327341|gb|EFB57636.1| radical SAM superfamily enzyme [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282331452|gb|EFB60966.1| radical SAM protein [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282595953|gb|EFC00917.1| radical SAM protein, family [Staphylococcus aureus subsp. aureus
           C160]
 gi|283460985|gb|EFC08075.1| radical SAM superfamily enzyme [Staphylococcus aureus subsp. aureus
           H19]
 gi|283471026|emb|CAQ50237.1| radical SAM protein, family [Staphylococcus aureus subsp. aureus
           ST398]
 gi|283790662|gb|EFC29479.1| radical SAM family protein [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|290920034|gb|EFD97102.1| Fe-S oxidoreductase [Staphylococcus aureus subsp. aureus M1015]
 gi|291095298|gb|EFE25563.1| TIGR01212 family radical SAM protein [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|291466539|gb|EFF09060.1| TIGR01212 family radical SAM protein [Staphylococcus aureus subsp.
           aureus M809]
 gi|295127736|gb|EFG57373.1| radical SAM protein [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297575586|gb|EFH94302.1| radical SAM protein [Staphylococcus aureus subsp. aureus MN8]
 gi|312437782|gb|ADQ76853.1| radical SAM protein [Staphylococcus aureus subsp. aureus TCH60]
 gi|315195674|gb|EFU26061.1| hypothetical protein CGSSa00_08415 [Staphylococcus aureus subsp.
           aureus CGS00]
          Length = 317

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 37/202 (18%), Positives = 69/202 (34%), Gaps = 19/202 (9%)

Query: 188 KFCTFCVVPYT------RGIEISRSLSQVVDEARKLIDNGVCEITLLG-QNVNAWRGKGL 240
             CTFC    +      R   I+    ++ ++  +    G          N +A      
Sbjct: 50  GGCTFCSAAGSGDFAGNRADSIAVQFKEIKEKMHEKWHEGKYIAYFQAFTNTHAPVEV-- 107

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLD-VLMPYLHLPVQSGS 299
                   +    + +  G+V L   T  P  + D +++   DL+     ++ L +Q+  
Sbjct: 108 ------LKEKFEPVLKEPGVVGLSIGT-RPDCLPDDVVEYLADLNQRTYLWVELGLQTIH 160

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
                 +NR H    Y   + ++R    +I + +  I G PGE  D   AT   V ++  
Sbjct: 161 QSTSDLINRAHDMQTYYDGVAKLRK--HNINVCTHIINGLPGEDYDMMMATAKEVAQMDV 218

Query: 360 AQAFSFKYSPRLGTPGSNMLEQ 381
                       GTP     ++
Sbjct: 219 QGIKIHLLHLLKGTPMVKQYDK 240


>gi|1724130|gb|AAB38508.1| oxygen-independent coproporphyrinogen oxidase [Rhodobacter
           sphaeroides]
          Length = 452

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/210 (15%), Positives = 75/210 (35%), Gaps = 20/210 (9%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA--WRGKGLDGE 243
           C++ C FC  P            Q +      +   + E+ L+ +++ A    G+   G 
Sbjct: 60  CERLCWFCACPTQGT--------QTLAPVEAYVGTLLQELELVKKHLPAGVKAGRLHWGG 111

Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL-------MPYLHLPVQ 296
                     + ++   ++     +   + S  +     D   +       M    + +Q
Sbjct: 112 GTPTILSPELIHKLAQAIKAVIPFAEDYEFSVEIDPMMVDEPKIRALSEEGMNRASIGIQ 171

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
             +D +  ++ R       R  ++         ++++D + G P +  +   AT+D V +
Sbjct: 172 DFTDIVQSAIGREQPFENTRACVETCARYGVH-SLNTDLVYGLPHQNRESLAATIDKVLQ 230

Query: 357 IGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           +G  +   F Y+       +   + +DENV
Sbjct: 231 LGPDRVAIFGYAHVP--WMAKRQKLIDENV 258


>gi|320580966|gb|EFW95188.1| hypothetical protein HPODL_3560 [Pichia angusta DL-1]
          Length = 406

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 34/216 (15%), Positives = 76/216 (35%), Gaps = 14/216 (6%)

Query: 156 VEDKFERLSIVDGGYNRKRGVTAFLTIQ-EGCDKFCTFCVVPYTR--GIEISRSLSQVVD 212
           V ++ +  +I +    +K   TA + +  + C + C FC V   R  G       ++  +
Sbjct: 119 VCEEAKCPNIGECWGGKKSEATATIMLMGDTCTRGCRFCSVKTNRNPGPL---DPNEPEN 175

Query: 213 EARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
            A  +   G+  + L   +    R    DG        +  + E    + +   +   R 
Sbjct: 176 TAEAISRWGLGYVVLTTVD----RDDLPDGGSHHLRSTVEKIKEKAPQILVECLSGDFRG 231

Query: 273 MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAIS 332
               ++K      + +      +++  D      +RR T  +   ++   +    D+   
Sbjct: 232 -DLEMVKVLASSPLDV--FAHNLETVEDLTPHIRDRRATYRQSLAVLRTAKETNVDLVTK 288

Query: 333 SDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
           +  ++GF GETD     T+  + +         +Y 
Sbjct: 289 TSLMLGF-GETDGQIMQTLKDLRENNVDVVTFGQYM 323


>gi|317494013|ref|ZP_07952429.1| SAM protein [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316917786|gb|EFV39129.1| SAM protein [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 300

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 39/177 (22%), Positives = 63/177 (35%), Gaps = 14/177 (7%)

Query: 188 KFCTFCVVPYTRGIEISRS--LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
             CTFC V      ++ R     Q+  +ARK+                         E C
Sbjct: 43  GGCTFCNVASFADEQMQRQSIAEQLAAQARKVNRANRYLAYFQAYTST-------YAEVC 95

Query: 246 TFSDLLYSLSEIKGLVRLRYT--TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303
           T  ++     +   +V +          D    L+  + D      +L L +QS  D+ L
Sbjct: 96  TLKNMYEEALQQADMVGICVGTRPDCVPDSVLDLLSEYRD-KGYEVWLELGLQSAQDKTL 154

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
           K +NR H    Y++     R     + + S  IVG PGE  ++   T++ V   G  
Sbjct: 155 KRINRGHDFTCYQKTTRAARER--GLKVCSHLIVGLPGEGKEECMRTLEQVVNTGVD 209


>gi|291514372|emb|CBK63582.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Alistipes shahii WAL 8301]
          Length = 377

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 39/192 (20%), Positives = 63/192 (32%), Gaps = 11/192 (5%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C +C           R +  +++   + +D       L  + V      G     C
Sbjct: 11  CKRVCAYCD---FYKSVDLRRMDPLLESMHRELDA--RREYLGSEPVRTRYFGGGTPSLC 65

Query: 246 TFSDLLYSLSEIKGLVRL---RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
               +   L     L        TT                    +  L + +QS  D  
Sbjct: 66  APEAVTGLLDHAATLFDCTAAEETTLEANPDDLTPAYLAALRRAGVNRLSVGIQSFDDAC 125

Query: 303 LKSMNRRHTAYEYRQIIDRI-RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
           LK MNRRH A +  + +    R    +I +  D I G PG  DD  R ++D    +G   
Sbjct: 126 LKLMNRRHNAAQAVEAVRSAQREGYENITV--DLIFGVPGFGDDTLRRSLDSALALGVQH 183

Query: 362 AFSFKYSPRLGT 373
             ++  +   GT
Sbjct: 184 ISAYHLTVEPGT 195


>gi|227824838|ref|ZP_03989670.1| radical SAM family protein [Acidaminococcus sp. D21]
 gi|226905337|gb|EEH91255.1| radical SAM family protein [Acidaminococcus sp. D21]
          Length = 620

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 42/243 (17%), Positives = 74/243 (30%), Gaps = 28/243 (11%)

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
           + V+ D +  D      +  G     R +        GC + C FC           R+ 
Sbjct: 235 KRVEPDINDLDFPTHPIVPYGDTVHDRIMLELF---RGCSRGCRFCNAGIIYRPVRERTP 291

Query: 208 SQVVDEARKLI-DNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
             V   AR+L+   G  E+++   +   +              +   L E K        
Sbjct: 292 ENVKKLARELVPATGYNEMSMFSLSTADYSQLDP--------LVRDLLEEFKDDKVSVSL 343

Query: 267 TSHPRD-MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
            S   D  S  L +    +      L    ++GS R+   +N+  T       +      
Sbjct: 344 PSLRIDSFSVKLAQEVQAVRK--SGLTFAPEAGSQRMRDVINKGVTEENLMDAVGAAFEN 401

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ------------AFSFKYSPRLGT 373
                +   F++G P ETD+D  A   L   + +                   + P+  T
Sbjct: 402 GWS-QVKLYFMIGLPTETDEDILAIAHLARAVKWQYKKITGRFGARVTVSVSNFVPKPYT 460

Query: 374 PGS 376
           P +
Sbjct: 461 PFA 463


>gi|220903466|ref|YP_002478778.1| Radical SAM domain-containing protein [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
 gi|219867765|gb|ACL48100.1| Radical SAM domain protein [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 401

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/143 (19%), Positives = 54/143 (37%), Gaps = 5/143 (3%)

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
             DG++    DL   L+  +G +R    ++ P  ++  +++           + L VQS 
Sbjct: 128 MPDGDQAACLDLA-GLALERGWIRSFRCSTRPDCVTAPVLERLRAAG--CRCVELGVQSF 184

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
           SD  L + +R +      +    ++     +A+    + G PG    DF A +    + G
Sbjct: 185 SDAALAASSRGYDGATALRACAHVKDA--GLALGVQLLPGMPGHAPADFLADVPQALRAG 242

Query: 359 YAQAFSFKYSPRLGTPGSNMLEQ 381
                 +      GT  + M  Q
Sbjct: 243 ADMLRFYPCLVLEGTALARMWRQ 265


>gi|254252235|ref|ZP_04945553.1| Lipoate synthase [Burkholderia dolosa AUO158]
 gi|124894844|gb|EAY68724.1| Lipoate synthase [Burkholderia dolosa AUO158]
          Length = 321

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 37/216 (17%), Positives = 72/216 (33%), Gaps = 17/216 (7%)

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEG-CDKFCTFCVVPYTRGIEISRSLSQVVD 212
           +SV ++    +I +    R     A   I  G C + C FC V    G        +   
Sbjct: 68  HSVCEEAMCPNIGECFAQRT----ATFMIMGGLCTRRCPFCDV--AHGRPDPLDPDEPAR 121

Query: 213 EARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKGLVRLRYTTSHPR 271
            A  +   G+  + +   +    R    DG    F+  + ++ + + G+     T     
Sbjct: 122 LADAVAALGLRYVVITSVD----RDDLRDGGAAHFAACIAAVRASVPGIGVEVLTPDFRG 177

Query: 272 DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAI 331
            +   L         +  +    V S    + ++           +++   +  RP +  
Sbjct: 178 RVERALDALSAAWPDVFNHNVETVPS----LYRAARPGADYRGSLELLAHAKGARPTLVT 233

Query: 332 SSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
            S  ++G  GE DD+ R TM  +   G       +Y
Sbjct: 234 KSGLMLGL-GERDDEVRDTMRDLRAHGVDVLTLGQY 268


>gi|327312558|ref|YP_004327995.1| lipoyl synthase [Prevotella denticola F0289]
 gi|326944707|gb|AEA20592.1| lipoyl synthase [Prevotella denticola F0289]
          Length = 639

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/183 (12%), Positives = 56/183 (30%), Gaps = 15/183 (8%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC      G       ++    A  +    +    +   +    R    D    
Sbjct: 422 CTRKCRFCNT--LSGRPHHLDPNEPCHVAESIKALRLRYAVITSVD----RDDLPDYGAA 475

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
            +   +  +  +    ++          SD + +       +            + + + 
Sbjct: 476 HWIRTVEEVRRMNPDTKIELLIPDFMGRSDLVRQVMATRPHVAG-------HNMETVRRL 528

Query: 306 MNRRHTAYEYRQIIDRIRSVR-PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
                +   Y + ++ +R +    I   + F++G  GET ++   TMD +   G  +   
Sbjct: 529 TPSVRSVARYDRSLEVLREIAGCGITAKTGFMLGL-GETHEEILETMDDILATGCRRLTL 587

Query: 365 FKY 367
            +Y
Sbjct: 588 GQY 590


>gi|312130679|ref|YP_003998019.1| radical sam domain protein [Leadbetterella byssophila DSM 17132]
 gi|311907225|gb|ADQ17666.1| Radical SAM domain protein [Leadbetterella byssophila DSM 17132]
          Length = 628

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 47/307 (15%), Positives = 95/307 (30%), Gaps = 59/307 (19%)

Query: 126 VVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNR--------KRGVT 177
           +V      ++   ++++      V++  Y +  + E  +  D  Y R        +  + 
Sbjct: 242 IVEVESNKWQANRIIQKVGQRTLVINPPYKIMTEEEMDASFDLPYTRMPHPKYSKRGPIP 301

Query: 178 AFLTI------QEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDN-GVCEIT--L 227
           ++  I        GC   C+FC +   +G  I SRS   ++ E  +L+ +         L
Sbjct: 302 SYEMIKFSINMHRGCFGGCSFCTISAHQGKFIASRSEQSILKEVDELVAHPEFKGYISDL 361

Query: 228 LGQNVNAWRGKGLDGEKCT----------------------FSDLLYSLSEIKGLVRLRY 265
            G + N +R KG D   C                        +++   +    G+ +   
Sbjct: 362 GGPSANMYRMKGKDESICNRCQAPSCIHPVICSNLDTSHKPLTEIYRKVDAHPGVKKAFV 421

Query: 266 TTSHPRDM------------SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR---- 309
            +    D+            +            +   L +  +  SD  L+ M +     
Sbjct: 422 GSGIRYDLLVDDFNKNNQDGNHDEYMEQLVTRHVSGRLKVAPEHTSDATLRVMRKPSFKY 481

Query: 310 -HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368
            H   E    I    S++  +     FI   PG  + D          +G+       ++
Sbjct: 482 FHKFKEKYDKIQEKHSLKQPLIPY--FISSHPGCEEADMAHLAAETKDMGFRLEQVQDFT 539

Query: 369 PRLGTPG 375
           P   T  
Sbjct: 540 PTPMTVA 546


>gi|260436087|ref|ZP_05790057.1| radical SAM domain protein [Synechococcus sp. WH 8109]
 gi|260413961|gb|EEX07257.1| radical SAM domain protein [Synechococcus sp. WH 8109]
          Length = 878

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 47/312 (15%), Positives = 91/312 (29%), Gaps = 40/312 (12%)

Query: 123 IVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTI 182
            V  + G        E L       RV+    +    +    +        R     + I
Sbjct: 217 YVPALYGTGADGVTLEPLH-PDLPARVLRRVATPMPHYAMGLVPHVETVHDRLT---VEI 272

Query: 183 QEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLD 241
           + GC + C FC                V++     +   G  + +LL             
Sbjct: 273 RRGCTRGCRFCQPGMLTRPARDVEPEAVIEAVETGMKQTGYSDFSLLS-----LSCSDYL 327

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
                  +L   L+     V L+  +       + +    G        L    ++G+ R
Sbjct: 328 ALPAVGVELRNRLA--DQNVTLQLPSQRVDRFDEDIAHILGGTRKA--GLTFAPEAGTQR 383

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPD--IAISSDFIVGFPGETDDD---FRATMDLVDK 356
           +   +N+         ++  IR+   +    +   F++G PGETD D      T  ++ +
Sbjct: 384 LRDIVNKG---LNDDDLLHGIRTAMQNGYRKVKLYFMIGLPGETDADVLGIAETCVMLQQ 440

Query: 357 IGYA------QAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQ--------- 401
                           ++P+  TP       V       R   L++  R           
Sbjct: 441 RCRDLGRLNLNITISNFTPKPHTPFQ--WHSVSTAEFERRQALLKEAFRHLRGVKVNFTD 498

Query: 402 -QVSFNDACVGQ 412
            ++S  +  VG+
Sbjct: 499 VRLSAMEDFVGR 510


>gi|238758291|ref|ZP_04619469.1| hypothetical protein yaldo0001_1780 [Yersinia aldovae ATCC 35236]
 gi|238703414|gb|EEP95953.1| hypothetical protein yaldo0001_1780 [Yersinia aldovae ATCC 35236]
          Length = 300

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 45/121 (37%), Gaps = 12/121 (9%)

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349
           +L L +Q+ +D+ LK +NR H    Y+Q   R R+    + +    IVG PGE       
Sbjct: 141 WLELGLQTANDKTLKRINRGHDFACYQQTARRARAR--GLKVCCHLIVGLPGENQVQCME 198

Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDAC 409
           T+D V   G             G   S M        KA R   L +   E  V      
Sbjct: 199 TLDNVVVTGVDGIKLHPLHIVEG---STMG-------KAWRAGRLSELALEDYVLIAGEM 248

Query: 410 V 410
           +
Sbjct: 249 I 249


>gi|167947386|ref|ZP_02534460.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Endoriftia persephone
          'Hot96_1+Hot96_2']
          Length = 50

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/42 (50%), Positives = 26/42 (61%)

Query: 54 ERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRI 95
          E     + AD+++LNTC IREKA EKV+S LGR R  K    
Sbjct: 2  ELTEVAEQADVLLLNTCSIREKAQEKVFSQLGRWRPWKEKNP 43


>gi|88800717|ref|ZP_01116276.1| lipoic acid synthetase [Reinekea sp. MED297]
 gi|88776581|gb|EAR07797.1| lipoic acid synthetase [Reinekea sp. MED297]
          Length = 324

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 72/217 (33%), Gaps = 14/217 (6%)

Query: 153 DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVD 212
            + +    E  S  + G     G   F+ + + C + C FC V    G   +   ++  +
Sbjct: 64  SHKLHSVCEEASCPNLGECFSHGTATFMIMGDICTRRCPFCDV--AHGRPNALDENEPRE 121

Query: 213 EARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
            A  + D G+  + +   +    R    DG     +D +  + +    + +       R 
Sbjct: 122 LAAAIGDMGLKYVVITSVD----RDDLRDGGAQHITDCVTEVRKSSPGIVIETLVPDFRG 177

Query: 273 --MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330
              +   I A G  DV    L          + K +           ++   +  +P++ 
Sbjct: 178 RLETAVEIMATGAPDVFNHNLETV-----PSLYKKVRPGADYQHSLDLLKAFKQAKPEVR 232

Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
             S  +VG  GET ++ +  M  +           +Y
Sbjct: 233 TKSGLMVG-CGETLEEVKEVMRDLHAHNVDMVTIGQY 268


>gi|298207568|ref|YP_003715747.1| coproporphyrinogen III oxidase [Croceibacter atlanticus HTCC2559]
 gi|83850204|gb|EAP88072.1| coproporphyrinogen III oxidase [Croceibacter atlanticus HTCC2559]
          Length = 376

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 42/236 (17%), Positives = 90/236 (38%), Gaps = 28/236 (11%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C +C   ++  ++      ++V+  +  +   + ++ L     N        G   
Sbjct: 11  CKQACHYCDFHFSTSLKK---KDELVNTLKTELS--LRKVELT----NTVECIYFGGGTP 61

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCL---------IKAHGDLDVLMPYLHLPVQ 296
           +       L+ +   V   Y  S   +++            I   G   +    L + +Q
Sbjct: 62  SL-LSAEELNSLIETVYTNYNVSETPEITLEANPDDLTKDKITELGKSKI--NRLSIGIQ 118

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
           S  +  LK MNR H A E  Q I+  ++   +I+I  D I G PG T   ++  +++  +
Sbjct: 119 SFFEDDLKLMNRAHNAKEALQCIEFSKTEFDNISI--DLIYGVPGMTTQKWKENLNIALQ 176

Query: 357 IGYAQAFSFKYSPRLGTPGSNMLEQ-----VDENVKAERLLCLQKKLREQQVSFND 407
           +      S+  +    T     +E+     VD+++  +    L + L++   S  +
Sbjct: 177 LDIPHISSYALTVEPNTALKRFIEKGVVPPVDDDLAKQHFDILVETLQQAGYSNYE 232


>gi|326382496|ref|ZP_08204187.1| lipoyl synthase [Gordonia neofelifaecis NRRL B-59395]
 gi|326198615|gb|EGD55798.1| lipoyl synthase [Gordonia neofelifaecis NRRL B-59395]
          Length = 348

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 44/249 (17%), Positives = 85/249 (34%), Gaps = 23/249 (9%)

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQ-EGCDKFCTFCVVPYTRGIEISRSLSQVVD 212
           ++V ++    +I +   +R+    A   I  E C + C FC +    G        +   
Sbjct: 64  HTVCEEAGCPNIYECWEDRE----ATFLIGGEQCTRRCDFCQI--DTGKPADLDRDEPRR 117

Query: 213 EARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
            A  +   G+   T+ G      R    D     +++ +  + E+     +         
Sbjct: 118 VAESVQSMGLRYSTITGV----ARDDLPDEGAWLYAETVRKIHELNPGTGVENLIPDFHA 173

Query: 273 MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAIS 332
             D L +       ++ +    V     RI KS+          +++ R R     +   
Sbjct: 174 KPDLLDEVFSSRPEVLAHNLETV----PRIFKSIRPAFRYERSLEVLTRARDY--GLVTK 227

Query: 333 SDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLL 392
           S+ I+G  GET D+ R ++  + + G       +Y  R     S     V+  VK E  +
Sbjct: 228 SNLILGM-GETPDEVRESLRDLHEAGCDIVTITQYL-RP----SVRHHPVERWVKPEEFV 281

Query: 393 CLQKKLREQ 401
              +   E 
Sbjct: 282 EHSQYAEEI 290


>gi|283851093|ref|ZP_06368377.1| Radical SAM domain protein [Desulfovibrio sp. FW1012B]
 gi|283573489|gb|EFC21465.1| Radical SAM domain protein [Desulfovibrio sp. FW1012B]
          Length = 851

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 45/305 (14%), Positives = 101/305 (33%), Gaps = 40/305 (13%)

Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
           V D D +     + +      ++R       + I  GC + C FC           RSL 
Sbjct: 225 VADLDDAPFPGCQVVPYAQAVHDRLS-----VEIARGCTRGCRFCHAGMVYRPVRERSLP 279

Query: 209 QVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
            +     + +   G  E++ L  +            +  F+  +      +  V L   +
Sbjct: 280 TLEKLVAEGLSRTGYEELSFLSLSTG-----DFSALESLFAQSIDRCRREQVAVSLP--S 332

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
                +SD ++     +        +  ++ + R+   +N+  T  +      R+ +   
Sbjct: 333 LRAGTLSDSILSMMAGIRR--TGATMAPEAATQRLRDVINKGITEDDILDHARRLFARGW 390

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKI---------GY-AQAFSFKYSPRLGTPGSN 377
              +   F++G P ET++D R   +L  ++              A    + P+  TP   
Sbjct: 391 Q-QVKLYFMIGLPTETEEDVRGIFELAKRVLAQAPPGTKRLQVTAAISPFVPKPHTP-FQ 448

Query: 378 MLEQVDENVKAERLLCLQKKL---REQQVSFND----------ACVGQIIEVLIEKHGKE 424
              Q+  +   +R+  L+      R   + +++          +  G+ +  L+E   +E
Sbjct: 449 WEAQITLDQIRQRVGLLRDLFSSDRRLTLRWHEPEMSFLEGVFSRAGRELAPLVEAGYRE 508

Query: 425 KGKLV 429
                
Sbjct: 509 GALFC 513


>gi|229820350|ref|YP_002881876.1| lipoic acid synthetase [Beutenbergia cavernae DSM 12333]
 gi|259494928|sp|C5C4Y6|LIPA_BEUC1 RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|229566263|gb|ACQ80114.1| lipoic acid synthetase [Beutenbergia cavernae DSM 12333]
          Length = 332

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 39/252 (15%), Positives = 79/252 (31%), Gaps = 29/252 (11%)

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQ-EGCDKFCTFCVVPYTRGIEISRSLSQVVD 212
           ++V ++    +I +   +R+    A   I  + C + C FC +    G        +   
Sbjct: 52  HTVCEEAGCPNIFECWEDRE----ATFLIGGDQCTRRCDFCQI--DTGKPADFDADEPRR 105

Query: 213 EARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
            A  +   G+   T+ G      R    DG    +++ +  +  +     +         
Sbjct: 106 VAESVQAMGLRYSTVTGV----ARDDLADGGAWLYAETVRQIHALNPGTGVELLIPDFNA 161

Query: 273 MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAIS 332
             D L +       ++ +    V     R+ K +           ++   R     +   
Sbjct: 162 EPDQLAEVFSSRPEVLAHNLETV----PRVFKRIRPGFRYARSLSVLTAARDA--GLVTK 215

Query: 333 SDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY---SPRLGTPGSNMLEQVDENVKAE 389
           S+ I+G  GET  +    +  +   G       +Y   SPR           V+  VK E
Sbjct: 216 SNLILGM-GETTAEAVEALADLHAAGCDLVTITQYLRPSPRHH--------PVERWVKPE 266

Query: 390 RLLCLQKKLREQ 401
             + L  +    
Sbjct: 267 EFVELSDEAERI 278


>gi|147677162|ref|YP_001211377.1| Fe-S oxidoreductase [Pelotomaculum thermopropionicum SI]
 gi|146273259|dbj|BAF59008.1| Fe-S oxidoreductase [Pelotomaculum thermopropionicum SI]
          Length = 613

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 54/351 (15%), Positives = 110/351 (31%), Gaps = 36/351 (10%)

Query: 71  HIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGP 130
            +  +  E +  FL      K   +   G L   +                     V+  
Sbjct: 160 FVIGEGEEVINEFLDAFLEAKRRGLSRQGLLFEALKVPGVYV-PSLYRVHYGEDGSVL-- 216

Query: 131 QTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190
                  E +      + V D + +       +   +  ++R     A + +  GC + C
Sbjct: 217 -KVAPAVEGVPERVTKRVVRDLNGAPFPLRPVVPFTEIVHDR-----AMVEVMRGCTRGC 270

Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFSD 249
            FC           +    V+++A  L+ N G  EI+L   + +          +     
Sbjct: 271 RFCQAGVLYRPVREKKCETVLEQAAGLVRNTGYGEISLTSLSTS-----DYTPVRRAVKA 325

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
           L+   +     V +   +    + S  L K    +      L    ++G+ R+   +N+ 
Sbjct: 326 LVDEYARQG--VNVSLPSLRADNFSVELAKEVQRVRR--SSLTFAPEAGTQRLRNVINKG 381

Query: 310 HTAYEYRQII-DRIRSVRPDIAISSDFIVGFPGETDDDFR-------ATMDLVDKIGYA- 360
            T  +  + +    R     + +   F++G P ETD+D           + L  + G   
Sbjct: 382 VTGEDLLKTVSAAFREGWQAVKLY--FMIGLPTETDEDLDGIAGLAGEVLALGRQAGVPA 439

Query: 361 -----QAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFN 406
                      + P+  TP      Q       ++   L  KL+ + ++FN
Sbjct: 440 GRLRVTVSVSSFVPKAHTP-FQWEPQAPLPALKQKQAYLSGKLKGRGLAFN 489


>gi|150388438|ref|YP_001318487.1| radical SAM domain-containing protein [Alkaliphilus metalliredigens
           QYMF]
 gi|149948300|gb|ABR46828.1| Radical SAM domain protein [Alkaliphilus metalliredigens QYMF]
          Length = 453

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 42/314 (13%), Positives = 90/314 (28%), Gaps = 35/314 (11%)

Query: 87  IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRR-SPIVNVVVGPQTYYRLPELLERARF 145
           +R L  +  K    ++ +V G  +    E         V      +    L   L+R   
Sbjct: 77  VRALAEAVKKYDPSIITMVGGTQSFLNPEAFFTETIDHVMKYTNTENMTTLFGYLQRGEQ 136

Query: 146 GKRVVDT-----DYSVEDKFERLSIVDGGYNRK-----------RGVTAFLTIQEGCDKF 189
              +        D+   DK      V                      A +   +GC K 
Sbjct: 137 PPIIHGICSGVNDFKTTDKCGMNQYVHPNRKATAKYRRQYSYFGYRPCAIMGTSQGCSKT 196

Query: 190 CTFCVVPYTRGI-EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS 248
           C+FC+     G  E    +  V +E R            + ++                 
Sbjct: 197 CSFCLRWRIEGATERYLPMDFVKEEIRS-----------IEEDNIMVFDNDFLHNGDRIE 245

Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL-MPYLHLPVQSGSDRILKSMN 307
           +L   L E           S    +S+   +       L +  + +  ++  +  LK   
Sbjct: 246 ELCNFLQEEGIHKNFICYASVNSILSNK--EVIKRFTKLGLSTVLVGYETFKEEELKKYQ 303

Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           ++ +  +       ++ +   + + + F++  P  +  DF+     + K+    +     
Sbjct: 304 KKSSTDDNLNASQFLKEI--GLDVWASFMI-HPDWSVADFKEFRRYLKKLNPEISTFSPL 360

Query: 368 SPRLGTPGSNMLEQ 381
           +P    P  N  + 
Sbjct: 361 TPFPNLPLYNEYKD 374


>gi|315127078|ref|YP_004069081.1| lipoyl synthase [Pseudoalteromonas sp. SM9913]
 gi|315015592|gb|ADT68930.1| lipoyl synthase [Pseudoalteromonas sp. SM9913]
          Length = 321

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/214 (14%), Positives = 68/214 (31%), Gaps = 10/214 (4%)

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           + +    E  S  +       G   F+ +   C + C FC V    G  +    ++    
Sbjct: 62  HGLHSVCEEASCPNLSECFNHGTATFMILGAICTRRCPFCDV--AHGRPLKPDAAEPEKL 119

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
           A  + D  +  + +   +    R    DG    F+D +  + +    + +       R  
Sbjct: 120 ALTIKDMKLSYVVITSVD----RDDLRDGGAQHFADCIREIRKHNPEITIEILVPDFRGR 175

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
            D  ++   +     P +       + R+ K            +++ R +   P++   S
Sbjct: 176 MDRALEILIETP---PDVFNHNLETAPRLYKLARPGADYKWSLELLRRFKEAHPEVKTKS 232

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
             +VG  GE   +    +  + +         +Y
Sbjct: 233 GLMVGL-GEEISEIEEVLRDLREHNVDMLTVGQY 265


>gi|307130038|ref|YP_003882054.1| lipoate synthase [Dickeya dadantii 3937]
 gi|306527567|gb|ADM97497.1| lipoate synthase [Dickeya dadantii 3937]
          Length = 321

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/182 (17%), Positives = 66/182 (36%), Gaps = 10/182 (5%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC V    G  ++   ++    A+ + D G+  + +   +    R    DG   
Sbjct: 94  CTRRCPFCDV--AHGRPLTPDANEPEKLAQTIHDMGLRYVVITSVD----RDDLRDGGAQ 147

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
            F+D + ++      +R+       R   D  +          P +         R+ + 
Sbjct: 148 HFADCISAIRRKSPNIRIETLVPDFRGRMDRALDILTVTP---PDVFNHNLENVPRLYRQ 204

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           +          +++++ +   P+I   S  +VG  GET+D+    M  + + G       
Sbjct: 205 VRPGANYEWSLKLLEKFKDSHPNIPTKSGLMVGL-GETNDEILDVMRDLRRHGVTMLTLG 263

Query: 366 KY 367
           +Y
Sbjct: 264 QY 265


>gi|238922251|ref|YP_002935765.1| oxygen-independent coproporphyrinogen III oxidase [Eubacterium
           eligens ATCC 27750]
 gi|238873923|gb|ACR73631.1| oxygen-independent coproporphyrinogen III oxidase [Eubacterium
           eligens ATCC 27750]
          Length = 471

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/235 (16%), Positives = 79/235 (33%), Gaps = 35/235 (14%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEK 244
           C   C +C          S +L    D     +D  + EI  + + +   R   +  G  
Sbjct: 153 CPSICLYCSFS-------SYALGAYKDYVDNYVDALIKEIRFVAETMKGRRLDTVYMGGG 205

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDC---LIKAHGDLDVLMPYLHLP-----VQ 296
              +     L ++  +V   +  S  R+++           D   ++   ++       Q
Sbjct: 206 TPTTLSAAQLDKVLTVVEEAFDLSRCRELTVEAGRPDSVTPDKFKVLKAHNVGRISINPQ 265

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
           + + + L  + R+HT  + +      R    D  I+ D I+G PGE  D+   T++ +  
Sbjct: 266 TMNQKTLDLIGRKHTVEDIKNAYAMAREAGLD-NINMDMILGLPGEGVDEVYHTLNEIKA 324

Query: 357 IGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAE-RLLCLQKKLREQQVSFNDACV 410
           +                            +K   RL  L+++  E  +   D+ +
Sbjct: 325 MRPESLTVH-----------------SLAIKRASRLNILRQQYTELSIENTDSII 362


>gi|41408057|ref|NP_960893.1| lipoyl synthase [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|47117071|sp|P61197|LIPA_MYCPA RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|41396412|gb|AAS04276.1| LipA [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 307

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 46/250 (18%), Positives = 89/250 (35%), Gaps = 25/250 (10%)

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQ-EGCDKFCTFCVVPYTRGIEISRS-LSQVV 211
           ++V ++    +I +   +R+    A   I  + C + C FC +   +  E+ R    +V 
Sbjct: 52  HTVCEEAGCPNIFECWEDRE----ATFLIGGDQCTRRCDFCQIDTGKPAELDRDEPRRVA 107

Query: 212 DEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPR 271
           D  R +   G+   T+ G      R    DG    +++ + ++ E+     +        
Sbjct: 108 DSVRTM---GLRYATVTGV----ARDDLPDGGAWLYAETVRAIKELNPSTGVELLIPDFN 160

Query: 272 DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAI 331
              D L +  G    ++ +    V     RI K +    T      ++   R     +  
Sbjct: 161 GRPDRLAEVFGSRPEVLAHNVETV----PRIFKRIRPAFTYRRSLDVLTAAREA--GLVT 214

Query: 332 SSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERL 391
            S+ I+G  GET D+ R  +  +   G       +Y      P +     V+  VK E  
Sbjct: 215 KSNLILGL-GETPDEVRTALADLRGAGCDIITITQYLR----PSARHHP-VERWVKPEEF 268

Query: 392 LCLQKKLREQ 401
           +   +   E 
Sbjct: 269 VEFARHAEEL 278


>gi|304389946|ref|ZP_07371903.1| coproporphyrinogen dehydrogenase [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|304326839|gb|EFL94080.1| coproporphyrinogen dehydrogenase [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
          Length = 475

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/137 (22%), Positives = 49/137 (35%), Gaps = 2/137 (1%)

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304
                +L  LSE  GLV     T+     +                +   +QS    +L 
Sbjct: 117 TDLVRVLRGLSETFGLVPGAEITTEANPDTVTPQYLEALAAGGFTRVSFGMQSAVPAVLA 176

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
           ++NR H        +    S    + +S D I G PGE+  D+RA++D   ++G      
Sbjct: 177 TLNRTHQQKHLVAGVQAAHSR--GLEVSVDLIYGTPGESLADWRASLDAALELGADHVSC 234

Query: 365 FKYSPRLGTPGSNMLEQ 381
           +      GT     L Q
Sbjct: 235 YALVIEPGTALGRALAQ 251


>gi|281413010|ref|YP_003347089.1| oxygen-independent coproporphyrinogen III oxidase [Thermotoga
           naphthophila RKU-10]
 gi|281374113|gb|ADA67675.1| oxygen-independent coproporphyrinogen III oxidase [Thermotoga
           naphthophila RKU-10]
          Length = 374

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 64/217 (29%), Gaps = 17/217 (7%)

Query: 186 CDKFCTFC----VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD 241
           C   C +C    VV        S  L ++      L ++ +      G   +        
Sbjct: 12  CKSKCVYCDFYSVVSEKFDEYFSHLLREIDLYEEVLRESEIKTAYFGGGTPSVVSPSF-- 69

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
                   +L  L  +         T      S    K      + +  + L VQ+  D 
Sbjct: 70  -----LGMVLEKLERVSRSFTPIEITIEVNPESVEPEKLKIYKQIGINRISLGVQACDDT 124

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
           +LK+  R +     ++    I     ++    DFI+G P ETD         +++     
Sbjct: 125 VLKNTGRLYNEETLKKKAKIILERFENVNF--DFILGLPSETDITLEKNFRFLEEFPPQH 182

Query: 362 AFSFKYSPRLGTPGSNMLEQ----VDENVKAERLLCL 394
              +       T   ++  +    + E    ER   L
Sbjct: 183 VSLYLLEIDEKTKLFDLTTKGLVELPEEGDLERRHDL 219


>gi|206577866|ref|YP_002236375.1| radical SAM protein, TIGR01212 family [Klebsiella pneumoniae 342]
 gi|290511590|ref|ZP_06550959.1| radical SAM protein [Klebsiella sp. 1_1_55]
 gi|206566924|gb|ACI08700.1| radical SAM protein, TIGR01212 family [Klebsiella pneumoniae 342]
 gi|289776583|gb|EFD84582.1| radical SAM protein [Klebsiella sp. 1_1_55]
          Length = 311

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 41/230 (17%), Positives = 74/230 (32%), Gaps = 33/230 (14%)

Query: 188 KFCTFCVV-PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT 246
             CTFC V  +    +  RS+++ +    +L++     +                  +  
Sbjct: 43  GGCTFCNVASFADEAQQHRSIAEQLAHQAQLVNRAKRYLAYF-----QAYTSTFAEVQVL 97

Query: 247 FSDLLYSLSE--IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304
            S    ++S+  I GL         P  + D L + H     +  +L L +Q+  D+ L 
Sbjct: 98  RSMYRQAISQANIVGLCVGTRPDCVPEAVLDLLSEYHEQGYEV--WLELGLQTAHDKTLH 155

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
            +NR H    Y++     R+    + + +  IVG PGET      T++ V   G      
Sbjct: 156 RINRGHDFACYQRTARLARAR--GLKVCAHLIVGLPGETQGHCLETLERVVATGVDGIKL 213

Query: 365 FKYSPRLGT---------------------PGSNMLEQVDENVKAERLLC 393
                  G+                         M+      V   R+  
Sbjct: 214 HPLHIVKGSIMAKAWQAGRLNGIELEAYTVTAGEMIRHTPPEVIYHRISA 263


>gi|88860562|ref|ZP_01135200.1| Lipoyl synthase [Pseudoalteromonas tunicata D2]
 gi|88817760|gb|EAR27577.1| Lipoyl synthase [Pseudoalteromonas tunicata D2]
          Length = 321

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/272 (13%), Positives = 81/272 (29%), Gaps = 19/272 (6%)

Query: 104 VVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE-------RARFGKRVVDTDYSV 156
           V      +    E +   P+  +        R PE L+           G +     + +
Sbjct: 5   VKIQPGVKLRDAEKMALIPVKVLPTEKTEMLRKPEWLKIRLPKSTERIDGIKSALRKHGL 64

Query: 157 EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARK 216
               E  S  +       G   F+ +   C + C FC V    G  ++   ++    A  
Sbjct: 65  HSVCEEASCPNLSECFNHGTATFMILGAICTRRCPFCDV--AHGRPLAPDAAEPEKLALT 122

Query: 217 LIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD-MSD 275
           + D  +  + +   +    R    DG    F+D +  + +    + +       R  M  
Sbjct: 123 IRDMKLSYVVITSVD----RDDLRDGGAQHFADCIREIRKYNPDITIEVLVPDFRGRMDR 178

Query: 276 CLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDF 335
            L         +  +        + R+ K            +++ R +   P++   S  
Sbjct: 179 ALEILIQTPPDVFNHNL----ETAPRLYKLARPGADYKWSLELLRRFKEAHPNVKTKSGL 234

Query: 336 IVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
           +VG  GE   +    +  + +         +Y
Sbjct: 235 MVGL-GEEISEIEQVLRDLREHNVDMLTVGQY 265


>gi|329893990|ref|ZP_08269998.1| Lipoate synthase [gamma proteobacterium IMCC3088]
 gi|328923333|gb|EGG30652.1| Lipoate synthase [gamma proteobacterium IMCC3088]
          Length = 324

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/232 (13%), Positives = 74/232 (31%), Gaps = 22/232 (9%)

Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
           R    KR+V  ++ +    E     +      RG    + + E C + C FC V      
Sbjct: 47  RYEAVKRIVH-EHRLATVCEEAKCPNMSECWSRGTATIMLMGEVCTRACRFCSVNTGNPK 105

Query: 202 --EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
               S            +   G+  + L   N    R    DG    ++  + ++     
Sbjct: 106 GWLDSEEPENTAKSVELM---GLKYVVLTSVN----RDDLPDGGAAHYAACVQAV----- 153

Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN----RRHTAYEY 315
             R R   +    ++   +     ++V++           + + +  +     R    + 
Sbjct: 154 --RERNPDTAVEALTPDFLGDLKAVEVVVDSGLQVFAQNVETVKRLTHPVRDPRAGYEQT 211

Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
            +++   +  RPD+   +  ++G  GET  + +  +  +           +Y
Sbjct: 212 LEVLAHAKRHRPDVLTKTSLMLGL-GETRQEVQECLQDLRAANVDIVTFGQY 262


>gi|325262050|ref|ZP_08128788.1| oxygen-independent coproporphyrinogen III oxidase 2 [Clostridium
           sp. D5]
 gi|324033504|gb|EGB94781.1| oxygen-independent coproporphyrinogen III oxidase 2 [Clostridium
           sp. D5]
          Length = 475

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/205 (17%), Positives = 73/205 (35%), Gaps = 24/205 (11%)

Query: 173 KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQ-- 230
           K G + ++ I   C   C++C          S  L +  D     +D    E++ +G+  
Sbjct: 148 KNGYSLYVGIPF-CPSICSYCS-------FGSSPLDRWEDRMDLYMDALCREVSAIGKAA 199

Query: 231 ---NVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV------RLRYTTSHPRDMSDCLIKAH 281
               +N     G        + L   LS ++                 P  ++   ++  
Sbjct: 200 KGRKLNTIYIGGGTPTTLNAAQLERLLSLLEKEFSFDDLLEFTVEAGRPDSITAEKLEVL 259

Query: 282 GDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV-RPDIAISSDFIVGFP 340
                 +  + +  Q+   + L ++ RRH+  + + +    R++   +I +  D I G P
Sbjct: 260 ARHP--VTRISVNPQTMQQKTLDAVGRRHSVQDVKDVFRLARTLGFKNINM--DLIAGLP 315

Query: 341 GETDDDFRATMDLVDKIGYAQAFSF 365
           GE   D R T+  ++ +G       
Sbjct: 316 GENAADMRDTLSQIEGLGPDSLTVH 340


>gi|307730728|ref|YP_003907952.1| oxygen-independent coproporphyrinogen III oxidase [Burkholderia sp.
           CCGE1003]
 gi|307585263|gb|ADN58661.1| oxygen-independent coproporphyrinogen III oxidase [Burkholderia sp.
           CCGE1003]
          Length = 461

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 46/234 (19%), Positives = 75/234 (32%), Gaps = 27/234 (11%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG---LDG 242
           CD  C +C                    AR  ++    EI L     +  R      L G
Sbjct: 64  CDTVCFYCGCNKIATKNR--------AHARPYLERLKREIVLQAACFDTRRPVSQLHLGG 115

Query: 243 EKCTFSDLLYSLSEIKGLVRLRY--TTSHPRDMSDCLI------KAHGDLDVL-MPYLHL 293
              TF      L+E+    R  +        + S  +       +    L  L    L L
Sbjct: 116 GTPTFMSN-DELAELLATAREHFAFVPDDEAEYSIEVDPREASPETIAHLRKLGFNRLSL 174

Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
            VQ     + K++NR         ++   R      +I  D I G P +T + F  T+D 
Sbjct: 175 GVQDFDPLVQKAINRIQPLDMTASVMQAARHAGFH-SIGVDLIYGLPHQTVESFSRTLDT 233

Query: 354 VDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV---KAERLLCLQKKLREQQVS 404
           + ++   +   F Y+         M  ++D       A RL  LQ+ +     +
Sbjct: 234 MIELAPDRLSVFAYAHMPQL--FKMQRRMDAATLPSPAMRLAILQRVVERLSTA 285


>gi|262408391|ref|ZP_06084938.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294643346|ref|ZP_06721167.1| radical SAM protein, TIGR01212 family [Bacteroides ovatus SD CC 2a]
 gi|294808205|ref|ZP_06766971.1| radical SAM protein, TIGR01212 family [Bacteroides xylanisolvens SD
           CC 1b]
 gi|262353943|gb|EEZ03036.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292641317|gb|EFF59514.1| radical SAM protein, TIGR01212 family [Bacteroides ovatus SD CC 2a]
 gi|294444614|gb|EFG13315.1| radical SAM protein, TIGR01212 family [Bacteroides xylanisolvens SD
           CC 1b]
          Length = 326

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 37/201 (18%), Positives = 70/201 (34%), Gaps = 11/201 (5%)

Query: 188 KFCTFCVVPYTRGIEISRSLSQV---VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK 244
             CT+C           R+   +   ++E +    +   E+  L              E 
Sbjct: 45  GGCTYCNNQTFNPDYC-RTEKSITTQLEEGKCFFAHKYPEMKYLA---YFQAYTNTYAEL 100

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV-LMPYLHLPVQSGSDRIL 303
                       + G+V L   T  P  M + L++   +L+      +   ++S  D  L
Sbjct: 101 EGLKRKYEEALTVDGVVGLVIGT-RPDCMPESLLRYLEELNKHTFLMVEYGIESTCDETL 159

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           K +NR HT  +    +   R+    I      I+G PGET D   A  +++  +  A   
Sbjct: 160 KRINRGHTYADTVAAVR--RTAACGILTGGHIILGLPGETHDTMVAQAEILSDLPLATLK 217

Query: 364 SFKYSPRLGTPGSNMLEQVDE 384
             +     GT  ++  ++  +
Sbjct: 218 IHQLQLIRGTRMAHEYDEAPD 238


>gi|237714233|ref|ZP_04544714.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|229445725|gb|EEO51516.1| conserved hypothetical protein [Bacteroides sp. D1]
          Length = 324

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 37/201 (18%), Positives = 70/201 (34%), Gaps = 11/201 (5%)

Query: 188 KFCTFCVVPYTRGIEISRSLSQV---VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK 244
             CT+C           R+   +   ++E +    +   E+  L              E 
Sbjct: 43  GGCTYCNNQTFNPDYC-RTEKSITTQLEEGKCFFAHKYPEMKYLA---YFQAYTNTYAEL 98

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV-LMPYLHLPVQSGSDRIL 303
                       + G+V L   T  P  M + L++   +L+      +   ++S  D  L
Sbjct: 99  EGLKRKYEEALTVDGVVGLVIGT-RPDCMPESLLRYLEELNKHTFLMVEYGIESTCDETL 157

Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363
           K +NR HT  +    +   R+    I      I+G PGET D   A  +++  +  A   
Sbjct: 158 KRINRGHTYADTVAAVR--RTAACGILTGGHIILGLPGETHDTMVAQAEILSDLPLATLK 215

Query: 364 SFKYSPRLGTPGSNMLEQVDE 384
             +     GT  ++  ++  +
Sbjct: 216 IHQLQLIRGTRMAHEYDEAPD 236


>gi|254525772|ref|ZP_05137824.1| lipoic acid synthetase [Prochlorococcus marinus str. MIT 9202]
 gi|221537196|gb|EEE39649.1| lipoic acid synthetase [Prochlorococcus marinus str. MIT 9202]
          Length = 310

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 36/250 (14%), Positives = 78/250 (31%), Gaps = 16/250 (6%)

Query: 128 VGPQTYYRLPELLERARFGKRVVDT-----DYSVEDKFERLSIVDGGYNRKRGVTAFLTI 182
           +      +   L  +A   +R+ +T     D  +    +  S  + G     G   FL +
Sbjct: 17  ISKNAPTKPEWLRVKAPQFERIGNTANLLSDLKLNTVCQEASCPNIGECFASGTATFLIM 76

Query: 183 QEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG 242
              C + C +C + + R        ++    A  +    +  + +   N    R    DG
Sbjct: 77  GPACTRACPYCDINFDRSK-RDLDPTEPHRLAEAVSRMNLKHVVITSVN----RDDLDDG 131

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302
               F   +  + +      +             L         ++ +    V+S    +
Sbjct: 132 GASQFFQCVSEVRKKSPETTIELLIPDLCGNWQALELVLDSKPNVLNHNIETVKS----L 187

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
            + +  +        ++ R R   P +   S F++G  GE+DD+    +  +        
Sbjct: 188 YRKVRPQGNYQRTLDLLKRTREYFPSVYTKSGFMLGL-GESDDEVLNLLSDLKNHFVDIV 246

Query: 363 FSFKY-SPRL 371
              +Y SP  
Sbjct: 247 TIGQYLSPGP 256


>gi|221124175|ref|XP_002154141.1| PREDICTED: similar to Lipoyl synthase, mitochondrial isoform 2
           [Hydra magnipapillata]
          Length = 358

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 41/234 (17%), Positives = 87/234 (37%), Gaps = 15/234 (6%)

Query: 156 VEDKFERLSIVDGGYNRKRGVTAFLTI-QEGCDKFCTFCVVPYTRGIEISRSLSQVVDEA 214
           V ++ +  +I +    ++   TA + I  + C + C FC V  +R        ++ ++ A
Sbjct: 93  VCEEAKCPNIGECWGGKEGTATATIMILGDTCTRGCRFCSVKTSRQPPA-LDPNEPINTA 151

Query: 215 RKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMS 274
           + +    +  I +   +    R    DG    F+  +  +  +   + +   T       
Sbjct: 152 KAISSWNLNYIVITSVD----RDDLPDGGSSHFAKTVQEVKRLNPNLIVECLTPDFAG-E 206

Query: 275 DCLIKAHGDLDV-LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
             LI       V +  +    V+S +  +      R T  +   +++ +++  P I   S
Sbjct: 207 KKLISTVASSGVDVYAHNIETVESLTWFVRD---PRATYKQSLSVLEHVKTNFPKILTKS 263

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG-SNMLEQVDENV 386
             +VGF  E  ++   TM  +  +G       +Y     T G + + E V   V
Sbjct: 264 SIMVGFG-EKREEVVTTMKDLRNVGVDCITIGQYM--QPTKGHAKVKEYVHPEV 314


>gi|317152020|ref|YP_004120068.1| Radical SAM domain-containing protein [Desulfovibrio aespoeensis
           Aspo-2]
 gi|317152309|ref|YP_004120357.1| Radical SAM domain-containing protein [Desulfovibrio aespoeensis
           Aspo-2]
 gi|316942271|gb|ADU61322.1| Radical SAM domain protein [Desulfovibrio aespoeensis Aspo-2]
 gi|316942560|gb|ADU61611.1| Radical SAM domain protein [Desulfovibrio aespoeensis Aspo-2]
          Length = 332

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/212 (12%), Positives = 65/212 (30%), Gaps = 20/212 (9%)

Query: 176 VTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS--QVVDEARKLIDNGVCEITLLGQNVN 233
           + A +     C+K C +C +           +    +++     +D     + L   +  
Sbjct: 36  IRAIVEFSNTCNKHCRYCGLRADNRTLRRYRMRAYHILETVAAAVDQRAGTVVLQSGDDP 95

Query: 234 AWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGD-LDVLMPYLH 292
           ++                  + E+   ++ R+  +    + D  +  +    +       
Sbjct: 96  SY--------------TAEYIGELVRQIKARHDVAVTLSLGDRGLDEYAYWRECGADRCL 141

Query: 293 LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352
           L +++      K + +          ++ +R +     + S  I G PG T  D    + 
Sbjct: 142 LKLETTDPARYKQLRQGEDFSARLHRVEELRRM--GYEVGSGVIAGLPGTTPVDALRDIL 199

Query: 353 LVDKIGYAQAFSFKYSPRLGTP-GSNMLEQVD 383
            +  +G        + P   TP   N    VD
Sbjct: 200 FLTDLGLDMIAVGPFVPNPDTPMAGNAPGSVD 231


>gi|167576803|ref|ZP_02369677.1| putative coproporphyrinogen III oxidase [Burkholderia thailandensis
           TXDOH]
          Length = 490

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 63/193 (32%), Gaps = 19/193 (9%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG----KGLD 241
           C+  C FC          SR       +  +  D  + E TL  Q V    G        
Sbjct: 75  CEYICHFCNYVKQLASPTSRD-----AQLDRWTDALIKESTLYAQQVPWITGALIESFYI 129

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDC--------LIKAHGDLDVLMPYLHL 293
           G           L  I   VR  +  +   +++          + K     D+      +
Sbjct: 130 GGGTAAVLTPAHLKRILDHVRSTFHVTPECELNIEGNPDNFCDIDKVRALSDIGFNRFSV 189

Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
            VQS +  + +  NR HT    RQ I  +RS    +  + D + G P +T +     +  
Sbjct: 190 GVQSFTPEVNQFTNRGHTPDMSRQAILNLRST--GLPFNVDMMFGLPHQTPETVSEDLRT 247

Query: 354 VDKIGYAQAFSFK 366
           + ++       ++
Sbjct: 248 LVELRVPTITIYR 260


>gi|154496676|ref|ZP_02035372.1| hypothetical protein BACCAP_00968 [Bacteroides capillosus ATCC
           29799]
 gi|150273928|gb|EDN01028.1| hypothetical protein BACCAP_00968 [Bacteroides capillosus ATCC
           29799]
          Length = 598

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/185 (15%), Positives = 57/185 (30%), Gaps = 18/185 (9%)

Query: 171 NRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQ 230
             K   +A L    GC   C +C     R         Q++ +   +  + +        
Sbjct: 168 REKYRFSATLETNRGCPFSCAYCDWGLNRARVRFAPEEQILGDIAWIASHAIY------D 221

Query: 231 NVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCL-IKAHGDLDVLMP 289
              A    G+      F +      +  G  +  + +       + L I        ++ 
Sbjct: 222 CYGADSNFGMFPRDARFVEAFCDHKKTSGYPKTFFVSFSKNSDMNVLAISEALHHAGMLQ 281

Query: 290 YLHLPVQSGSDRILKSMNR-----RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETD 344
              L  QS +   L+++ R      + +   ++   R       +   S+ I+G P ET 
Sbjct: 282 GATLSFQSLNPDTLEAIGRKNLDLGYFSDMMKEYHKRC------VPTYSELILGLPLETK 335

Query: 345 DDFRA 349
           + F  
Sbjct: 336 ESFMN 340


>gi|317403266|gb|EFV83784.1| oxygen-independent coproporphyrinogen III oxidase [Achromobacter
           xylosoxidans C54]
          Length = 475

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/191 (16%), Positives = 66/191 (34%), Gaps = 10/191 (5%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           CD  C +C         I+R   +       L       +  LG  +   +     G   
Sbjct: 79  CDSVCYYC----ACNKVITRHHDRAARYLDALAREIALHVAELGAGMPVSQLHFGGGTPT 134

Query: 246 TFSD--LLYSLSEIKGLVRLRYTTSHPRDMSDC---LIKAHGDLDVLMPYLHLPVQSGSD 300
             SD  L   +++++G  R         ++        +      +    L   VQ    
Sbjct: 135 FLSDEELDRLMADLRGAFRFEPDAEISIEVDPRTATPQRLEKLRRLGFNRLSFGVQDFDA 194

Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360
           R+  +++R  +  + R ++   R++    +I+ D I G P +T + F  T+  V  +   
Sbjct: 195 RVQVAVHRVQSFEDVRDLMQSARAL-DYASINVDLIYGLPLQTAESFARTIAQVSALRPD 253

Query: 361 QAFSFKYSPRL 371
           +   + Y+   
Sbjct: 254 RIALYAYAHLP 264


>gi|170759054|ref|YP_001788894.1| radical SAM family protein [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169406043|gb|ACA54454.1| radical SAM protein, TIGR01212 family [Clostridium botulinum A3
           str. Loch Maree]
          Length = 310

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/199 (15%), Positives = 64/199 (32%), Gaps = 15/199 (7%)

Query: 188 KFCTFCVVPYT------RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD 241
             C +C    +      R  +I +    +    ++   +            N +    + 
Sbjct: 46  GGCIYCSERGSGDFAGDRNFKIHKQFQDIKKIMKEKWSSDKYIAYFQA-YTNTYASVNIL 104

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
            EK   +     +  +    R         ++ + L            ++ L +Q+ +D 
Sbjct: 105 REKYEEAMSEEGVVALAIATRPDCLDQDVLNLIEEL------SKKKYIWVELGLQTVNDE 158

Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361
             K +NR +    + + +  +R    DI + S  I G PGET +D   T+  + K+    
Sbjct: 159 TAKIINRGYKLNVFEKAVKDLRERNIDIVVHS--IFGLPGETKEDMIGTVKYISKLDIQG 216

Query: 362 AFSFKYSPRLGTPGSNMLE 380
                      TP   + E
Sbjct: 217 VKFHLLHLLEDTPLVKLYE 235


>gi|256825458|ref|YP_003149418.1| lipoyl synthase [Kytococcus sedentarius DSM 20547]
 gi|256688851|gb|ACV06653.1| lipoate synthase [Kytococcus sedentarius DSM 20547]
          Length = 340

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 36/211 (17%), Positives = 71/211 (33%), Gaps = 18/211 (8%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC +    G   +    + +  A  +   G+   T+ G      R    DG   
Sbjct: 81  CTRRCDFCDI--ATGKPQALDPMEPLKVANSVAQMGLRYATVTGV----ARDDMPDGAAT 134

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
            ++D + ++ E      +           + + K       +  +    V     RI + 
Sbjct: 135 LYADTIRAIHERNPNTGVEILPPDFGAKPELVQKVFDARPEVFAHNLETV----PRIFRQ 190

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           +    T  +  ++I   +     +   S+ I+G  GE D++ R  M  +   G       
Sbjct: 191 IRPAFTYEKSLKVISMAKE--DGLLTKSNLILGM-GEDDEEIRQAMRDLRDAGCDILTIT 247

Query: 366 KYSPRLGTPGSNMLEQVDENVKAERLLCLQK 396
           +Y  R     S +   +D  VK E  +   +
Sbjct: 248 QYL-RP----SKLHHPIDRWVKPEEFVAHSE 273


>gi|153004854|ref|YP_001379179.1| lipoyl synthase [Anaeromyxobacter sp. Fw109-5]
 gi|171769307|sp|A7HBU9|LIPA_ANADF RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|152028427|gb|ABS26195.1| lipoic acid synthetase [Anaeromyxobacter sp. Fw109-5]
          Length = 294

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 41/212 (19%), Positives = 72/212 (33%), Gaps = 17/212 (8%)

Query: 186 CDKFCTFCVVPY-TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK 244
           C + C FC V        +     +    A  + + G+  I +   +    R    DG  
Sbjct: 61  CTRGCRFCNVKTDAHPPPL--DPDEPRHLAEAIAELGLDYIVVTSVD----RDDLPDGGA 114

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304
             F+D +  L +I  L+    T     D            DV    L          +++
Sbjct: 115 GHFADAIRRLKDIPQLLVEVLTPDFRGDAEAVRTVGRARPDVFANNLETV--RRLTPVVR 172

Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364
            +   +   +   ++ R++   P I   S  +VG  GET+D+    M  +   G      
Sbjct: 173 DLKAGY--DQTLAVLARMKREFPRIVTKSSIMVGL-GETEDELLEAMGDLRAAGVEILTL 229

Query: 365 FKYSPRLGTPGSNMLEQVDENVKAERLLCLQK 396
            +Y      P +  L  V E VK E+    ++
Sbjct: 230 GQYLR----PSAWHLPVV-EYVKPEKFAAWRE 256


>gi|121996829|ref|YP_001001616.1| oxygen-independent coproporphyrinogen III oxidase [Halorhodospira
           halophila SL1]
 gi|121588234|gb|ABM60814.1| oxygen-independent coproporphyrinogen III oxidase [Halorhodospira
           halophila SL1]
          Length = 464

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 43/215 (20%), Positives = 76/215 (35%), Gaps = 28/215 (13%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR--------- 236
           C   C +C          SR        A++ +++   EI L  Q     R         
Sbjct: 65  CRNVCFYCACNKIVTANYSR--------AQEYLEHVFKEIELQAQLFGEHRRVEQLHLGG 116

Query: 237 GKGLDGEKCTFSDLLYSLSEI----KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLH 292
           G     +      L+  L E         R       PRD+    I    +L      + 
Sbjct: 117 GTPNYLKIDDLGRLVSKLREQFTLDDTDNREFSIEIDPRDVELEDIGRLAELG--FNRMS 174

Query: 293 LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI-AISSDFIVGFPGETDDDFRATM 351
           + VQ  ++ +  ++NR  +A   R II+  R  R    + + D I G P +T + F  T+
Sbjct: 175 VGVQDFNEEVQHAVNRVQSAELCRSIIEEGR--RHGFRSTNVDLIYGLPKQTVESFEQTL 232

Query: 352 DLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
           D V ++   +   + Y+         +  Q++E+ 
Sbjct: 233 DEVIELRPERLAIYNYAHLPHL--FKIQRQINEDE 265


>gi|289193223|ref|YP_003459164.1| hypothetical protein MFS40622_1757 [Methanocaldococcus sp.
           FS406-22]
 gi|288939673|gb|ADC70428.1| conserved hypothetical protein [Methanocaldococcus sp. FS406-22]
          Length = 318

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 42/247 (17%), Positives = 75/247 (30%), Gaps = 27/247 (10%)

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK----FCTFCVVPYTRGIEI 203
           +++D  Y     F +  I      +++     +    GC       C FC      G  I
Sbjct: 8   KIIDEIYKEGYLFAQYGIYVKKKFKQKVFKIPVDAGFGCPHKKNGGCIFC---PEMGRPI 64

Query: 204 SRS--------LSQVVDEARKLIDNGVCEITLL---GQNVNAWRGKGLDGEKCTFSDLLY 252
           S            Q+  +       G  +  +    G N  A   K    E   FS    
Sbjct: 65  SVKYCRANIPLKEQIEKQMENQRKKGFKKFYIYFYPGTNTYAPAEKLK--EIWDFSLSYE 122

Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312
            +  +    R         D+    ++   D+     ++ L +QS   + L+ +NR H  
Sbjct: 123 DVIGLSIGTRPDCLEKEKLDILAEYVERGYDI-----WIDLGIQSMHQKTLEILNRGHNV 177

Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372
            +  + I         I +    I+G PGET  +   T  ++  +       +       
Sbjct: 178 SDTIKAIKDCHKR--GIKVCGHIILGLPGETWKEMIETAKILSLLDIEAVKIYPLVVVKD 235

Query: 373 TPGSNML 379
           T    M 
Sbjct: 236 TKLEEMY 242


>gi|254774941|ref|ZP_05216457.1| lipoyl synthase [Mycobacterium avium subsp. avium ATCC 25291]
          Length = 307

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 46/250 (18%), Positives = 89/250 (35%), Gaps = 25/250 (10%)

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQ-EGCDKFCTFCVVPYTRGIEISRS-LSQVV 211
           ++V ++    +I +   +R+    A   I  + C + C FC +   +  E+ R    +V 
Sbjct: 52  HTVCEEAGCPNIFECWEDRE----ATFLIGGDQCTRRCDFCQIDTGKPAELDRDEPRRVA 107

Query: 212 DEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPR 271
           D  R +   G+   T+ G      R    DG    +++ + ++ E+     +        
Sbjct: 108 DSVRTM---GLRYATVTGV----ARDDLPDGGAWLYAETVRAIKELNPSTGVELLIPDFN 160

Query: 272 DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAI 331
              D L +  G    ++ +    V     RI K +    T      ++   R     +  
Sbjct: 161 GRPDRLAEVFGSRPEVLAHNVETV----PRIFKRIRPAFTYRRSLDVLTAAREA--GLVT 214

Query: 332 SSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERL 391
            S+ I+G  GET D+ R  +  +   G       +Y      P +     V+  VK E  
Sbjct: 215 KSNLILGL-GETPDEVRTALADLRGAGCDLITITQYLR----PSARHHP-VERWVKPEEF 268

Query: 392 LCLQKKLREQ 401
           +   +   E 
Sbjct: 269 VEFARHAEEL 278


>gi|67921462|ref|ZP_00514980.1| Radical SAM [Crocosphaera watsonii WH 8501]
 gi|67856574|gb|EAM51815.1| Radical SAM [Crocosphaera watsonii WH 8501]
          Length = 865

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 39/265 (14%), Positives = 80/265 (30%), Gaps = 54/265 (20%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLG--------- 229
           + I+ GC + C FC                +++   + I   G  E +LL          
Sbjct: 256 VEIRRGCTRGCRFCQPGMLTRPARDVQPDDIIETIERGIRETGHNEFSLLSLSCSDYLAL 315

Query: 230 QNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMP 289
             V       L  E  T S     +      +      +    ++               
Sbjct: 316 PAVGTEIKNRLKDENITLSLPSQRVDRFDKNIANIVGGNRQSGLT--------------- 360

Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFR- 348
                 ++G+ R+   +N+  T  E  + +        D  +   F++G PGETD D   
Sbjct: 361 ---FAPEAGTQRMRDVINKGLTNEELLRGVKTAVEEGWD-KVKLYFMIGLPGETDLDVLG 416

Query: 349 --ATMDLVDK---------IGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKK 397
              T+  + +         + +       ++P+  TP       V       +   L++ 
Sbjct: 417 IVETVRWLRQECRIKGRKPLQFT-ITVSNFTPKPHTPFQ--WHSVSTAEFKRKQELLREA 473

Query: 398 LR----------EQQVSFNDACVGQ 412
            R          + ++S  +  +G+
Sbjct: 474 FRGLRGVKANYTDIRISAMEDFIGR 498


>gi|313200615|ref|YP_004039273.1| oxygen-independent coproporphyrinogen iii oxidase [Methylovorus sp.
           MP688]
 gi|312439931|gb|ADQ84037.1| oxygen-independent coproporphyrinogen III oxidase [Methylovorus sp.
           MP688]
          Length = 464

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 82/229 (35%), Gaps = 33/229 (14%)

Query: 172 RKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQN 231
           R   + A +     CD  C +C        + S        +A + ++  + E+ L+   
Sbjct: 48  RDISLYAHIPF---CDTLCYYCGCNMVATRDYS--------KAERYLEVLLQEMALVADT 96

Query: 232 VNAWR--GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM-----SDCLIKAHGDL 284
            +A R   +   G           L ++      R+  +   ++        L +AH D 
Sbjct: 97  ASADRLVRQMHWGGGTPTYLKPDDLVKLHQAFAGRFRMADDAEIGCEMDPRELSRAHVDA 156

Query: 285 DVLMPY--LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGE 342
                +  L L VQ    ++ +++NR  +     Q+   IR    + +I+ D I+G P +
Sbjct: 157 LASCGFNRLSLGVQDLDPQVQEAINRIQSQDLIEQVYGWIRDAGIN-SINFDLIIGLPHQ 215

Query: 343 TDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERL 391
           T + F  T+D V  +   +   F Y              V    K +RL
Sbjct: 216 TPERFAHTLDAVIAMAPDRLAVFNY------------AHVPWMKKHQRL 252


>gi|312136170|ref|YP_004003508.1| Radical SAM domain-containing protein [Caldicellulosiruptor
           owensensis OL]
 gi|311776221|gb|ADQ05708.1| Radical SAM domain protein [Caldicellulosiruptor owensensis OL]
          Length = 351

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/201 (12%), Positives = 68/201 (33%), Gaps = 17/201 (8%)

Query: 176 VTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL--SQVVDEARKLIDNGVCEITLLGQNVN 233
           +   +     C   C +C +  +        +   ++V+ A++    G   + L      
Sbjct: 53  LRGLIEFSSYCKNDCFYCGLRRSNNQAQRYRMQEDEIVEVAKRAYQMGYHTVVLQS---- 108

Query: 234 AWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHL 293
              G+ +   K     ++  + E   +           D       A  D         +
Sbjct: 109 ---GEDMFYTKDRMCSIIKKIKENVDVAITLSIGERSYDEYKAFKDAGADR------FLM 159

Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
             ++ ++++ +  +   +  +  + +   +++     + + F++G PG+T DD    + L
Sbjct: 160 RFETSNEKLYRQYHPGMSFEKRIECLKWFKNL--GYELGTGFLIGLPGQTIDDLAQDIIL 217

Query: 354 VDKIGYAQAFSFKYSPRLGTP 374
           V ++         + P   TP
Sbjct: 218 VKELDADMIGIGPFIPHPQTP 238


>gi|310778063|ref|YP_003966396.1| coproporphyrinogen III oxidase, anaerobic [Ilyobacter polytropus
           DSM 2926]
 gi|309747386|gb|ADO82048.1| coproporphyrinogen III oxidase, anaerobic [Ilyobacter polytropus
           DSM 2926]
          Length = 359

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 42/235 (17%), Positives = 75/235 (31%), Gaps = 31/235 (13%)

Query: 186 CDKFCTFC------VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
           C   C +C        PY R   +      +  E +   +     +              
Sbjct: 12  CINKCQYCDFLSFKSTPYKRREYV----EYLKKEIKLYPEFEYDTVYF------------ 55

Query: 240 LDGEKCTFSDL--LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQS 297
             G   +  D   +  + E+  +      T      S  L K     +  +  L + VQS
Sbjct: 56  -GGGTPSLLDPFEVKEILELLQIREDSEVTLEVNPKSVDLEKLRAFRNAGINRLSIGVQS 114

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
                LK + R HT  E  +I    R    +  +S D +   PG++ +D R  +  + K+
Sbjct: 115 FDPYYLKLIGRLHTGIEAEEIYRDARKAGFE-NVSLDLMFSLPGQSIEDVRKDLVKIAKL 173

Query: 358 GYAQAFSFKYSPRLGTPGSNM-----LEQVDENVKAERLLCLQKKLREQQVSFND 407
                  +      GTP         LE+ D  ++AE    +   L+ +     +
Sbjct: 174 RPEHISIYSLIWEEGTPLYEKLLKGDLEETDNEIEAEMYELIIDFLKSKGYIHYE 228


>gi|299143546|ref|ZP_07036626.1| radical SAM domain protein [Peptoniphilus sp. oral taxon 386 str.
           F0131]
 gi|298518031|gb|EFI41770.1| radical SAM domain protein [Peptoniphilus sp. oral taxon 386 str.
           F0131]
          Length = 288

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 36/199 (18%), Positives = 68/199 (34%), Gaps = 22/199 (11%)

Query: 185 GCDKF-CTFCVVPYTRGIEISRSLSQV---VDEARKLIDNGVCEITLLGQNVNAWRGKGL 240
           GC    CTFC + Y     I R +  +   ++  R            +        G  L
Sbjct: 24  GCSHNDCTFCYM-YKDEPFIIRKIDDIIAELETIRDYFPQFER--VFIAD------GDAL 74

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL-DVLMPYLHLPVQSGS 299
             +      LL  +++    V    + +   D++   ++    L D  +  L++  +SG 
Sbjct: 75  VLKTTDLLRLLEYINKNFPNVNRISSYATAGDINRKSVEELKQLYDNGLKMLYIGFESGD 134

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA----TMDLVD 355
           D IL  + +  T  EY   +++ + V+  +  S   I G  G   + ++     T  L+ 
Sbjct: 135 DEILADIKKGLTTEEYISAMEKCKKVK--MQTSITIIAGLGG--REKWKQNAINTAKLIT 190

Query: 356 KIGYAQAFSFKYSPRLGTP 374
           K                 P
Sbjct: 191 KTKPDYVSYLTMRIYKNAP 209


>gi|326201856|ref|ZP_08191726.1| oxygen-independent coproporphyrinogen III oxidase [Clostridium
           papyrosolvens DSM 2782]
 gi|325987651|gb|EGD48477.1| oxygen-independent coproporphyrinogen III oxidase [Clostridium
           papyrosolvens DSM 2782]
          Length = 380

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 37/235 (15%), Positives = 79/235 (33%), Gaps = 23/235 (9%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNV-NAWRGKGLDGEK 244
           C   C +C      G          ++ A         E+ L  + + +        G  
Sbjct: 16  CSSKCNYCDFNSYAGK---------INFADNYFKAMKKEVELYKEYMKDYLIHTIFIGGG 66

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCL------IKAHGDLDVL-MPYLHLPVQS 297
                    + EI    +  +  S   ++S         I+         +  + + +Q+
Sbjct: 67  TPSVVSERYIFEILEKCKTCFNISDNCEISIESNPGTLSIEKLKAYKKAGINRISMGLQA 126

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
               +LK + R H+  ++   +   R    +  I++D I G PG+T ++++ T+  +   
Sbjct: 127 YQKNLLKYLGRCHSHEDFSASVKNARDAGFE-NINADIIFGIPGQTIENWKETLSYLISR 185

Query: 358 GYAQAFSFKYSPRLGTPGSNMLE-----QVDENVKAERLLCLQKKLREQQVSFND 407
           G     ++      GT    M +     QV++ +  E        L EQ +   +
Sbjct: 186 GINHISAYSLKIEEGTKFGTMEKEGSLVQVEDELDREMYHYAVDYLSEQGLKQYE 240


>gi|145223519|ref|YP_001134197.1| lipoyl synthase [Mycobacterium gilvum PYR-GCK]
 gi|189046607|sp|A4TBK7|LIPA_MYCGI RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|145216005|gb|ABP45409.1| lipoic acid synthetase [Mycobacterium gilvum PYR-GCK]
          Length = 317

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 73/221 (33%), Gaps = 21/221 (9%)

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQ-EGCDKFCTFCVVPYTRGIEISRSLSQVVD 212
           ++V ++    +I +   +R+    A   I  E C + C FC +    G        +   
Sbjct: 52  HTVCEEAGCPNIFECWEDRE----ATFLIGGEQCTRRCDFCQI--DTGKPADLDRDEPRR 105

Query: 213 EARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
            A  +   G+   T+ G      R    DG    +++ +  +  +     +         
Sbjct: 106 VAESVQAMGLRYSTVTGV----ARDDLPDGGAWLYAETVRQIKALNPNTGVELLIPDFNA 161

Query: 273 MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAIS 332
             D L         ++ +    V     RI K +           +I   R     +   
Sbjct: 162 DPDQLRAVFESRPEVLAHNVETV----PRIFKRIRPGFRYERSLAVITAARDY--GLVTK 215

Query: 333 SDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY---SPR 370
           S+ I+G  GET ++ RA +  +   G       +Y   SPR
Sbjct: 216 SNLILGM-GETPEEVRAALHDLHDAGCDIVTITQYLRPSPR 255


>gi|312622979|ref|YP_004024592.1| lipoic acid synthetase [Caldicellulosiruptor kronotskyensis 2002]
 gi|312203446|gb|ADQ46773.1| lipoic acid synthetase [Caldicellulosiruptor kronotskyensis 2002]
          Length = 291

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 40/245 (16%), Positives = 88/245 (35%), Gaps = 23/245 (9%)

Query: 132 TYYRLPELLE-RARFGKRVVDTD-----YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEG 185
           +Y + P+ L+ R +  +++ D       +S+    E     +      +    FL + + 
Sbjct: 2   SYLKKPDWLKIRVKADQKIDDVIEILKMFSLHTVCEEAQCPNIYECFSKKTATFLIMGDV 61

Query: 186 CDKFCTFCVVPYTRG-IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK 244
           C + CTFC V   +     S     V +    L   G+  + +        R    DG  
Sbjct: 62  CTRNCTFCDVKKGKPVKLKSDEPKMVANAVSTL---GLKYVVITSVT----RDDLPDGGA 114

Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQ--SGSDRI 302
             F++ + S+       ++       +   + ++K       ++ +    ++    S R 
Sbjct: 115 SHFAECIMSIKGKSPYTKIEVLIPDFKGSFESVLKVVEASPDVVAHNIETIERLYPSVRP 174

Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
           L S  R         ++  I+ +  +I   S  +VG  GET D+ +  ++ +  +     
Sbjct: 175 LASYKRS------IDVLRMIKEIDKNIFTKSGIMVGL-GETKDEVKKALEDLRNVECDFV 227

Query: 363 FSFKY 367
              +Y
Sbjct: 228 TIGQY 232


>gi|327330685|gb|EGE72431.1| radical SAM domain protein [Propionibacterium acnes HL097PA1]
          Length = 650

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 62/386 (16%), Positives = 113/386 (29%), Gaps = 54/386 (13%)

Query: 71  HIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGP 130
            +     E        IR+ K      G + L+V                  + +  +G 
Sbjct: 166 AVLGDGEEACLEISEIIRDWKKEGCPGGREGLLVRLAATGGIYVPCFYDVEYLDDGTIGK 225

Query: 131 QTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190
               RL            V+D D     K   + + +  + R       + I  GC + C
Sbjct: 226 VAPNRLEA--PYTVSKHTVMDLDEWQYPKRPIVPVAETVHERYS-----VEIFRGCTRGC 278

Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFSD 249
            FC           RS+  +       +   G+ E+ LL   +++     +       +D
Sbjct: 279 RFCQAGMITRPVRERSIDAIAQMVDGGLQATGLEEVGLLS--LSSADHSEISDITKGLAD 336

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
                      V L   ++     +  L             L    + GS+R+ + +N++
Sbjct: 337 RYE-----GTNVSLSLPSTRVDTFNIDLANELSRNGR-RSGLTFAPEGGSERMRRVINKK 390

Query: 310 HTAYEYRQIIDR-----IRSVRPDIAISSDFIVGFPGETDDDFRATMDLV---------- 354
            T  +  + +        R V+        F+ G P ETD+D     D+           
Sbjct: 391 VTEEDLIRTVATAFGNGWRQVK------LYFMCGLPTETDEDVLGIHDMASHVVAAGRAA 444

Query: 355 ---DKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLRE-------QQVS 404
                I         + P+  TP      Q   +    RL  L+  +R          + 
Sbjct: 445 AGRKDIRCT-ISIGGFVPKPHTP-FQWAAQASADEVDHRLSVLRDSIRADRQFGRSIGMR 502

Query: 405 FNDACVGQIIEVLIEKHGKEKGKLVG 430
           ++D   G     +IE       + VG
Sbjct: 503 YHDGRPG-----IIEGLLSRGDRRVG 523


>gi|309811036|ref|ZP_07704834.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Dermacoccus sp. Ellin185]
 gi|308435000|gb|EFP58834.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Dermacoccus sp. Ellin185]
          Length = 410

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/170 (17%), Positives = 56/170 (32%), Gaps = 21/170 (12%)

Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDC---------LIKAHGDLDVLMPYLH 292
           G           L  I    R  +  +   +++            ++   D       + 
Sbjct: 96  GGGTPTMLPADDLVRILAKARELFGLAEGCEVTTEANPDSVDETYLRTLADGG--FTRVS 153

Query: 293 LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352
           + +QS    +L ++ R H      + +   + V   + +S D I G PGE+ DD+R ++D
Sbjct: 154 IGMQSAVPHVLATLERTHNPANVERAVRAAKDV--GLQVSIDLIYGAPGESLDDWRTSLD 211

Query: 353 LVDKIGYAQAFSFKYSPRLGTPGSN--------MLEQVDENVKAERLLCL 394
               +      ++      GT            + +  DE  K E    L
Sbjct: 212 AAIALEPDHISAYALVVEEGTKMGAQVRRGELPLPDDDDEADKYELADAL 261


>gi|294139714|ref|YP_003555692.1| radical SAM domain-containing protein [Shewanella violacea DSS12]
 gi|293326183|dbj|BAJ00914.1| radical SAM domain protein [Shewanella violacea DSS12]
          Length = 598

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 69/193 (35%), Gaps = 15/193 (7%)

Query: 180 LTIQEGCDKF-CTFCVVPYTRGIEISRSLSQV-VDEARKLIDNGVCEITLLGQNVNAWRG 237
           LTI  GC    C+FC V          + + + VD   +LI+         GQ    +  
Sbjct: 321 LTIAHGCYWRKCSFCDVSLDYIDRYDTAGADILVDRIEELIEE-------TGQ--TGFHF 371

Query: 238 KGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQS 297
                   T   L   L E K ++         R  S+   +   D   +       ++ 
Sbjct: 372 VDEALPPKTLFALAKRLIERKVVISWWGNIRFERTFSEARCQLLADSGCIAVSG--GLEV 429

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
            SDR+LK M +  +      +     +    I + +  + GFP +T+ +   ++++V ++
Sbjct: 430 ASDRLLKLMKKGVSVERVGNVTKAFSNA--GILVHAYLMYGFPTQTEQETIDSLEMVRQM 487

Query: 358 GYAQAFSFKYSPR 370
                F   Y  R
Sbjct: 488 MEQGCFQSAYWHR 500


>gi|167465375|ref|ZP_02330464.1| lipoic acid synthetase [Paenibacillus larvae subsp. larvae
           BRL-230010]
          Length = 294

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/216 (16%), Positives = 75/216 (34%), Gaps = 13/216 (6%)

Query: 152 TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVV 211
           T ++V ++ +  +I +     +     F+ + + C + C FC V      E+   L +  
Sbjct: 34  TLHTVCEEAKCPNIHECWAQHR--TATFMILGDICTRACRFCAVNTGMPTEL--DLEEPG 89

Query: 212 DEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPR 271
             A   +  G+    +        R    DG    F+  + ++        +        
Sbjct: 90  RVADAAVQMGLKHCVITSV----ARDDLKDGGASIFAACIKAVRSKNPFCSVEVLIPDFM 145

Query: 272 DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAI 331
              D L         ++ +    V+  SD     +  +       +++ R + ++PDI  
Sbjct: 146 GDEDSLRIMMDAKPDILNHNIETVRRLSD----RVRAKAKYERSLELLRRAKEMQPDIPT 201

Query: 332 SSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
            S  ++G  GE  ++   TMD +  I        +Y
Sbjct: 202 KSSLMIGV-GEEWNEILETMDDLRAINCDIMTIGQY 236


>gi|323442031|gb|EGA99667.1| hypothetical protein SAO46_2059 [Staphylococcus aureus O46]
          Length = 317

 Score = 52.3 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 37/202 (18%), Positives = 69/202 (34%), Gaps = 19/202 (9%)

Query: 188 KFCTFCVVPYT------RGIEISRSLSQVVDEARKLIDNGVCEITLLG-QNVNAWRGKGL 240
             CTFC    +      R   I+    ++ ++  +    G          N +A      
Sbjct: 50  GGCTFCSAAGSGDFAGNRADSIAVQFKEIKEKMHEKWHEGKYIAYFQAFTNTHAPVEV-- 107

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLD-VLMPYLHLPVQSGS 299
                   +    + +  G+V L   T  P  + D +++   DL+     ++ L +Q+  
Sbjct: 108 ------LKEKFEPVLKEPGVVGLSIGT-RPDCLPDDVVEYLADLNQRTYLWVELGLQTIH 160

Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
                 +NR H    Y   + ++R    +I + +  I G PGE  D   AT   V ++  
Sbjct: 161 QSTSDLINRAHDMKTYYDGVAKLRK--HNINVCTHIINGLPGEDYDMMMATAKEVAQMDV 218

Query: 360 AQAFSFKYSPRLGTPGSNMLEQ 381
                       GTP     ++
Sbjct: 219 QGIKIHLLHLLKGTPMVKQYDK 240


>gi|313813143|gb|EFS50857.1| radical SAM domain protein [Propionibacterium acnes HL025PA1]
          Length = 650

 Score = 52.3 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 62/386 (16%), Positives = 113/386 (29%), Gaps = 54/386 (13%)

Query: 71  HIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGP 130
            +     E        IR+ K      G + L+V                  + +  +G 
Sbjct: 166 AVLGDGEEACLEISEIIRDWKKEGCPGGREGLLVRLAATGGIYVPCFYDVEYLDDGTIGK 225

Query: 131 QTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190
               RL            V+D D     K   + + +  + R       + I  GC + C
Sbjct: 226 VAPNRLEA--PYTVSKHTVMDLDEWQYPKRPIVPVAETVHERYS-----VEIFRGCTRGC 278

Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFSD 249
            FC           RS+  +       +   G+ E+ LL   +++     +       +D
Sbjct: 279 RFCQAGMITRPVRERSIDAIAQMVDGGLQATGLEEVGLLS--LSSADHSEISDITKGLAD 336

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
                      V L   ++     +  L             L    + GS+R+ + +N++
Sbjct: 337 RYE-----GTNVSLSLPSTRVDTFNIDLANELSRNGR-RSGLTFAPEGGSERMRRVINKK 390

Query: 310 HTAYEYRQIIDR-----IRSVRPDIAISSDFIVGFPGETDDDFRATMDLV---------- 354
            T  +  + +        R V+        F+ G P ETD+D     D+           
Sbjct: 391 VTEEDLIRTVATAFGNGWRQVK------LYFMCGLPTETDEDVLGIHDMASHVVAAGRAA 444

Query: 355 ---DKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLRE-------QQVS 404
                I         + P+  TP      Q   +    RL  L+  +R          + 
Sbjct: 445 AGRKDIRCT-ISIGGFVPKPHTP-FQWAAQASADEVDHRLSVLRDSIRADRQFGRSIGMR 502

Query: 405 FNDACVGQIIEVLIEKHGKEKGKLVG 430
           ++D   G     +IE       + VG
Sbjct: 503 YHDGRPG-----IIEGLLSRGDRRVG 523


>gi|294790840|ref|ZP_06755998.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Scardovia inopinata F0304]
 gi|294458737|gb|EFG27090.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Scardovia inopinata F0304]
          Length = 419

 Score = 52.3 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 38/237 (16%), Positives = 73/237 (30%), Gaps = 43/237 (18%)

Query: 186 CDKFCTFC----VVPYTRGIEISRS------LSQVVDEARKLIDNGVCEITLLGQNVNAW 235
           C + C +C          G   SR       + ++V   +   + G+ E  L        
Sbjct: 36  CMRRCGYCDFNTYTASDLGGGASRDNYANLAVQEMVLVKQWQEEQGIKEPALSTV----- 90

Query: 236 RGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDC---------LIKAHGDLDV 286
                 G         + L  I    R  +      +++            I    D   
Sbjct: 91  ----FFGGGTPTILPAHDLISILSAARDIWGICEGAEITTEANPDTVDSNYIHQLADGG- 145

Query: 287 LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDD 346
               +   +QS    +L +++R HT       +   +     +  S D I G PGE+ D 
Sbjct: 146 -FTRISFGMQSAVPSVLATLDRTHTPAHVESGVRAAQKA--GLRTSLDLIYGTPGESLDQ 202

Query: 347 FRATMDLVDKIGYAQAFSFKYSPRLGT-----------PGSNMLEQVDENVKAERLL 392
           +  ++     +G     ++  +    T           P  +  +Q ++   AER+L
Sbjct: 203 WEVSLRAALDLGVTHISAYALTVEPHTAMGRRISRGQLPAPDDDDQAEKYRLAERML 259


>gi|289426302|ref|ZP_06428048.1| radical SAM domain protein [Propionibacterium acnes SK187]
 gi|289153467|gb|EFD02182.1| radical SAM domain protein [Propionibacterium acnes SK187]
          Length = 650

 Score = 52.3 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 62/386 (16%), Positives = 113/386 (29%), Gaps = 54/386 (13%)

Query: 71  HIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGP 130
            +     E        IR+ K      G + L+V                  + +  +G 
Sbjct: 166 AVLGDGEEACLEISEIIRDWKKEGCPGGREGLLVRLAATGGIYVPCFYDVEYLDDGTIGK 225

Query: 131 QTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190
               RL            V+D D     K   + + +  + R       + I  GC + C
Sbjct: 226 VAPNRLEA--PYTVSKHTVMDLDEWQYPKRPIVPVAETVHERYS-----VEIFRGCTRGC 278

Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFSD 249
            FC           RS+  +       +   G+ E+ LL   +++     +       +D
Sbjct: 279 RFCQAGMITRPVRERSIDAIAQMVDGGLQATGLEEVGLLS--LSSADHSEISDITKGLAD 336

Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309
                      V L   ++     +  L             L    + GS+R+ + +N++
Sbjct: 337 RYE-----GTNVSLSLPSTRVDTFNIDLANELSRNGR-RSGLTFAPEGGSERMRRVINKK 390

Query: 310 HTAYEYRQIIDR-----IRSVRPDIAISSDFIVGFPGETDDDFRATMDLV---------- 354
            T  +  + +        R V+        F+ G P ETD+D     D+           
Sbjct: 391 VTEEDLIRTVATAFGNGWRQVK------LYFMCGLPTETDEDVLGIHDMASHVVAAGRAA 444

Query: 355 ---DKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLRE-------QQVS 404
                I         + P+  TP      Q   +    RL  L+  +R          + 
Sbjct: 445 AGRKDIRCT-ISIGGFVPKPHTP-FQWAAQASADEVDHRLSVLRDSIRADRQFGRSIGMR 502

Query: 405 FNDACVGQIIEVLIEKHGKEKGKLVG 430
           ++D   G     +IE       + VG
Sbjct: 503 YHDGRPG-----IIEGLLSRGDRRVG 523


>gi|298492837|ref|YP_003723014.1| radical SAM domain-containing protein ['Nostoc azollae' 0708]
 gi|298234755|gb|ADI65891.1| Radical SAM domain protein ['Nostoc azollae' 0708]
          Length = 543

 Score = 52.3 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 50/237 (21%), Positives = 95/237 (40%), Gaps = 26/237 (10%)

Query: 179 FLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK 238
            + +   C + C FC+  Y      + +L   +  A +        + LLG +V      
Sbjct: 227 MVEVVRSCPEMCRFCLASYLTLPFRTANLENSLIPAIQQGLKVTNRLGLLGASVTQH--- 283

Query: 239 GLDGEKCTFSDLLYSLSEIK-GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQS 297
                   F +LL  +S+ K   VRL   +     +++ L       D     L + ++S
Sbjct: 284 ------PEFPELLDYISQPKHDDVRLSVASVRTNTVTEKLATTLAKRDT--RSLTIAIES 335

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPD--IAISSDFIVGFPGETDDDFRATMDLVD 355
           GSD++ + +N++       +II    + +     ++    +VG PGE  +D  AT+ ++ 
Sbjct: 336 GSDKLRQIINKK---LYNDEIIQAAVNAKAGGLSSLKLYGMVGIPGEETEDLDATVAVMK 392

Query: 356 KIGYA------QAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFN 406
            +  A            + P+  TP       V++    +RL  LQK+L+ Q + F 
Sbjct: 393 AVKKAAPGLRLTLGCSTFVPKSHTPFQWFA--VNKQ-SEKRLQFLQKQLKPQGIDFR 446


>gi|189467137|ref|ZP_03015922.1| hypothetical protein BACINT_03521 [Bacteroides intestinalis DSM
           17393]
 gi|189435401|gb|EDV04386.1| hypothetical protein BACINT_03521 [Bacteroides intestinalis DSM
           17393]
          Length = 343

 Score = 52.3 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/207 (11%), Positives = 61/207 (29%), Gaps = 21/207 (10%)

Query: 176 VTAFLTIQEGCDKFCTFCVVPYTRGIEISR-----SLSQVVDEARKLIDNGVCEITLLGQ 230
           +   + I   C   C +C +   R    S      +   +++  R+    G     L G 
Sbjct: 52  IRGLIEITNHCRNNCYYCGI---RKGNQSVLRYELTREDILECCREGYTLGFRTFVLQGG 108

Query: 231 NVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY 290
             ++ +   +        + + ++        +  +       +       G    L+ +
Sbjct: 109 ETSSVKDDFI-------LETVTAIHREFPDCAITLSLGEKSHETYEHFFRAGANRYLLRH 161

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
                +         M+ R    +  Q +  ++ +       +  +VG PG+  D     
Sbjct: 162 ETHNEEHYHHLHPDKMSIR----QRLQCLAWLKEI--GYQTGTGIMVGSPGQNTDHLVED 215

Query: 351 MDLVDKIGYAQAFSFKYSPRLGTPGSN 377
           +  +++          + P   TP + 
Sbjct: 216 LLFIERFHPEMIGIGPFIPHHDTPFAA 242


>gi|165977029|ref|YP_001652622.1| lipoyl synthase [Actinobacillus pleuropneumoniae serovar 3 str.
           JL03]
 gi|238687509|sp|B0BRR9|LIPA_ACTPJ RecName: Full=Lipoyl synthase; AltName: Full=Lip-syn; Short=LS;
           AltName: Full=Lipoate synthase; AltName: Full=Lipoic
           acid synthase; AltName: Full=Sulfur insertion protein
           lipA
 gi|165877130|gb|ABY70178.1| lipoic acid synthetase [Actinobacillus pleuropneumoniae serovar 3
           str. JL03]
          Length = 330

 Score = 52.3 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/214 (14%), Positives = 67/214 (31%), Gaps = 10/214 (4%)

Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213
           + +    E  S  +       G   F+ +   C + C FC V    G  +   L +    
Sbjct: 71  HGLHSVCEEASCPNLHECFNHGTATFMIMGAICTRRCPFCDV--AHGKPLPLDLEEPRKV 128

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
           A  + D  +  + +   +    R    D     F+  +  +  +    ++       R  
Sbjct: 129 AETVQDMKLKYVVITSVD----RDDLADRGAAHFAATVREIKALNPECKVEILVPDFRGR 184

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
            +  ++         P +         R+ + +          +++   +   P+I   S
Sbjct: 185 VEQAVEILKQNP---PDVFNHNLENVPRLYREVRPGADYKWSLELLKIFKQEFPNIPTKS 241

Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
             +VG  GET+++    M  +   G       +Y
Sbjct: 242 GLMVGL-GETNEEILEVMQDLRDHGVTMLTIGQY 274


>gi|330953784|gb|EGH54044.1| coproporphyrinogen III oxidase [Pseudomonas syringae Cit 7]
          Length = 460

 Score = 52.3 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 41/246 (16%), Positives = 85/246 (34%), Gaps = 22/246 (8%)

Query: 160 FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC----VVPYTRGIEISR--SLSQVVDE 213
           F+ L  +       R ++ ++ +   C   C +C    V+   RG   +    L   +  
Sbjct: 38  FDLLHALRESRKASRPLSLYVHLPF-CANICYYCACNKVITKDRGRAQAYLKRLEHEMRM 96

Query: 214 ARKLIDNG--VCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPR 271
               +  G  V ++ L G          L             L +  G   +        
Sbjct: 97  LACHLAPGQVVEQLHLGGGTPTFLSHDELRRLMAQLRSHFNLLDDDSGDYGIEIDPREAD 156

Query: 272 DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAI 331
             +  L++  G        + L VQ     + +++NR  +  E R I++  R+++   ++
Sbjct: 157 WSTMGLLRELG-----FNRVSLGVQDLDPTVQRAINRMQSLEETRAIVEAARTLQFR-SV 210

Query: 332 SSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY-------SPRLGTPGSNMLEQVDE 384
           + D I G P +    F  T+D V  +   +   F Y        P+     +++ +   +
Sbjct: 211 NIDLIYGLPAQNPQTFSHTVDKVIDLQPDRLSVFNYAHLPERFMPQRRIDAADLPDAASK 270

Query: 385 NVKAER 390
            +  ER
Sbjct: 271 LLMLER 276


>gi|320528917|ref|ZP_08030009.1| radical SAM domain protein [Selenomonas artemidis F0399]
 gi|320138547|gb|EFW30437.1| radical SAM domain protein [Selenomonas artemidis F0399]
          Length = 884

 Score = 52.3 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 41/238 (17%), Positives = 81/238 (34%), Gaps = 28/238 (11%)

Query: 184 EGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDG 242
            GC + C FC           R+ +++   A  L +  G  E++L   +   +       
Sbjct: 273 RGCSRGCRFCQAGIAYRPARERTEARLRRMAHGLTEATGYDEMSLTSLSSADYS------ 326

Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRD-MSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301
             C    +   + + +G        S   D  S  L      +      L    ++G+ R
Sbjct: 327 --CLGRLVDDLMDDYRGEQISFSLPSLRIDSFSIDLAHKMQQVRK--SGLTFAPEAGTQR 382

Query: 302 ILKSMNRRHTAYEYRQII-DRIRSVRPDIAISSDFIVGFPGETDDDF-------RATMDL 353
           +   +N+  T     +      R     + +   F++G P ETD+D        +  +DL
Sbjct: 383 LRDVINKGVTEENLIEACGAAFRHGWKQVKLY--FMMGLPTETDEDIIGIARLAKRVVDL 440

Query: 354 VDKIG-----YAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFN 406
             +I              + P+  TP      Q+       R   L++ + ++ +SF+
Sbjct: 441 YTEIRGRRGVKVTVSVSCFVPKPYTP-FQWFGQLSIEEFQRRQQLLKEHITDRSISFH 497


>gi|297161185|gb|ADI10897.1| lipoyl synthase [Streptomyces bingchenggensis BCW-1]
          Length = 316

 Score = 52.3 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/219 (15%), Positives = 70/219 (31%), Gaps = 18/219 (8%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC +    G   +    +    A  +    +   T+ G      R    DG   
Sbjct: 82  CTRRCDFCQI--DTGKPQALDRDEPRRVAESVQSMELKYATVTGV----ARDDLEDGGAW 135

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
            +++ +  +  +     +         + + L +       ++ +    V     RI K 
Sbjct: 136 LYAETVRQIHSLMPDTGVELLIPDFNAVPEQLAEVFSARPEVLAHNVETV----PRIFKR 191

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           +          ++I + R     +   S+ I+G  GE   +    +  +   G       
Sbjct: 192 IRPGFRYERSLEVITKAREA--GLVTKSNLILGM-GEERAEISQALQDLYDAGCELITIT 248

Query: 366 KYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVS 404
           +Y  R     S     VD  VK +  + L+++  E   +
Sbjct: 249 QYL-RP----SVRHHPVDRWVKPQEFVELKEEAEEIGYA 282


>gi|282897489|ref|ZP_06305490.1| Lipoate synthase [Raphidiopsis brookii D9]
 gi|281197584|gb|EFA72479.1| Lipoate synthase [Raphidiopsis brookii D9]
          Length = 289

 Score = 52.3 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 72/220 (32%), Gaps = 10/220 (4%)

Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207
           + +  D S+    E  S  + G     G   FL +   C + C +C +        S   
Sbjct: 22  KEILRDLSLNTVCEEASCPNIGECFNAGTATFLIMGPACTRACPYCDI-DFDKKPKSLDP 80

Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267
           ++    A       +  + +   N    R    DG    F + + S+  +     +    
Sbjct: 81  TEPYRLAEAARRMQLNHLVITSVN----RDDLPDGGASQFVNCINSVRGVSPNTTIEILI 136

Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327
                    L      +  ++ +    V     R+ + +  +       +++ R R + P
Sbjct: 137 PDLCGNWQALESLLQSVPEVLNHNTETV----PRLYRRVRPQGDYQRTMELLRRSRQISP 192

Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367
                S  +VG  GETD++ R  M  +  +G       +Y
Sbjct: 193 TTYTKSGIMVGL-GETDEEVRQVMQDLRTVGCDILTIGQY 231


>gi|310658225|ref|YP_003935946.1| hypothetical protein CLOST_0916 [Clostridium sticklandii DSM 519]
 gi|308825003|emb|CBH21041.1| conserved protein of unknown function [Clostridium sticklandii]
          Length = 316

 Score = 52.3 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 35/204 (17%), Positives = 71/204 (34%), Gaps = 14/204 (6%)

Query: 184 EGCDK--FCTFCVVPYTRGIEISRSLSQVVDEARKLIDN-----GVCEITLLGQNVNAWR 236
           +GC     C+FC         +S  +  V ++  K ID         +     QN     
Sbjct: 37  DGCVAKDGCSFCSEKAAGFEALSNKI-SVKEQLEKNIDYIGPRYKAKKYIAYFQNFTNTY 95

Query: 237 GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQ 296
                 E      +   + EI    R         +    ++K   +   +   + L +Q
Sbjct: 96  LPPAVFEAYVKEAIREDVVEISVSTRP----DSLDERYLDILKMIKEAHDIEITIELGLQ 151

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
           S + + LKS+NR HT  E+ +  + ++S      +    I+  P + ++D      ++  
Sbjct: 152 SINHKTLKSINRGHTLAEFIEAANLVKSY--GFELVVHMILNLPYDDEEDIIEGAKILSA 209

Query: 357 IGYAQAFSFKYSPRLGTPGSNMLE 380
           +               TP ++++E
Sbjct: 210 LKVDAVKLHSLYLIKNTPMADLVE 233


>gi|300934154|ref|ZP_07149410.1| lipoyl synthase [Corynebacterium resistens DSM 45100]
          Length = 348

 Score = 52.3 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 35/213 (16%), Positives = 71/213 (33%), Gaps = 18/213 (8%)

Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245
           C + C FC +   R   + R   +    A  + + G+   T+ G      R    D    
Sbjct: 81  CSRRCDFCQIKSGRPSPLDR--DEPRRVAESIQEMGLRYATITGVT----RDDLDDEGAW 134

Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305
            +++++  + E+     +   T    +  D L         +  +    V     RI K 
Sbjct: 135 LYAEVVRKIHELNPNTGVENLTPDFSNKPDLLDIVFDAEPEVFAHNLETV----PRIFKR 190

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
           +          ++I R       +   S+ I+G  GET ++ +  +  +   G       
Sbjct: 191 IRPAFKYDRSLEVIHRAHKR--GLVTKSNLILGM-GETKEEVQEAIKDMVDAGTDILTIT 247

Query: 366 KYSPRLGTPGSNMLEQVDENVKAERLLCLQKKL 398
           +Y  R     S +   ++  VK E  +   +  
Sbjct: 248 QYL-RP----SPLHHPIERWVKPEEFMEHSEVA 275


>gi|74316653|ref|YP_314393.1| coproporphyrinogen III oxidase [Thiobacillus denitrificans ATCC
           25259]
 gi|74056148|gb|AAZ96588.1| oxygen-independent coproporphyrinogen III oxidase HemN
           [Thiobacillus denitrificans ATCC 25259]
          Length = 456

 Score = 52.3 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/223 (16%), Positives = 78/223 (34%), Gaps = 21/223 (9%)

Query: 158 DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL---SQVVDEA 214
           +   R ++     +R   + A +     CD  C +C        + S+++   + +  E 
Sbjct: 34  ETDWREALARARSDRALSLYAHVPF---CDSLCYYCGCNMVATRDYSKTVPYLAAIEREM 90

Query: 215 RKLID-----NGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSH 269
            +          V ++   G          +         ++     I     +      
Sbjct: 91  ERTAALVDPGRVVRQLHWGGGTPTYLNPDDI----RRLMAMMQRNFTIAPDAEISCEV-D 145

Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329
           PR+++   + A  +       L   VQ     + +++NR  + +  RQ++D  R +    
Sbjct: 146 PRELTYEHLAALRETG--FNRLSFGVQDMDSDVQQAVNRIQSEFLIRQVLDWAREL--GF 201

Query: 330 A-ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
           + I+ D IVG P +T + F  T++ V      +   F Y+   
Sbjct: 202 SSINLDLIVGLPKQTVESFSRTLERVTNWAPDRLAVFAYAHVP 244


>gi|42523462|ref|NP_968842.1| putative Fe-S oxidoreductase [Bdellovibrio bacteriovorus HD100]
 gi|39575668|emb|CAE79835.1| putative Fe-S oxidoreductase [Bdellovibrio bacteriovorus HD100]
          Length = 348

 Score = 52.3 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 46/125 (36%), Gaps = 7/125 (5%)

Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
           + L VQS  +  L+ M R HTA +    I++I S    + +    I G P ETD+    T
Sbjct: 161 VELGVQSFYNDQLEFMRRGHTAEDSIAAINKIASST-TVDLGIHLIFGSPTETDEQIIET 219

Query: 351 MDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ-----VDENVKAERLLC-LQKKLREQQVS 404
             + + +               TP   M  +     +D++    R+   LQ       + 
Sbjct: 220 AKICNDLPITNVKLHNLHVLKNTPLEEMYHKGEFLPIDKDTYTRRVELFLQHLSPRLALH 279

Query: 405 FNDAC 409
              A 
Sbjct: 280 RLAAY 284


>gi|313896084|ref|ZP_07829638.1| radical SAM domain protein [Selenomonas sp. oral taxon 137 str.
           F0430]
 gi|312975509|gb|EFR40970.1| radical SAM domain protein [Selenomonas sp. oral taxon 137 str.
           F0430]
          Length = 582

 Score = 52.3 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 77/232 (33%), Gaps = 36/232 (15%)

Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239
           +    GC + C FC+  Y      SRSL  +  + R  +  G     +            
Sbjct: 252 IETARGCGRHCRFCMAGYCFRRPRSRSLPVIEAQVRDALSYGKKIGLMGA---------- 301

Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD-MSDCLIKAHGDLDVLMPYLHLPVQSG 298
                  + ++      I G        S   D ++  L+++       +  L L  ++G
Sbjct: 302 ---AISDYPEIDALCRSILGTGLSMSVASFRADSVTRELVESLAASG--LRTLTLAPEAG 356

Query: 299 SDRILKSMNRRHTAYEYRQIIDR-IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
           S R+   +N+    +     ID    +  P+  +    +VG P E D D  A +DL  ++
Sbjct: 357 SARMRAVINKGIEEHHLFTAIDLGAAAHIPNFKLY--IMVGLPFEEDADIEAIIDLAVRL 414

Query: 358 GYAQA-----------FSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKL 398
                               + P+  TP   M          +RL  + K++
Sbjct: 415 R-DYMDEKGCRGTLTLSVNPFVPKPFTPFQWMP-----MADKKRLDAVMKRI 460


>gi|167758137|ref|ZP_02430264.1| hypothetical protein CLOSCI_00475 [Clostridium scindens ATCC 35704]
 gi|167664034|gb|EDS08164.1| hypothetical protein CLOSCI_00475 [Clostridium scindens ATCC 35704]
          Length = 621

 Score = 52.3 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 49/290 (16%), Positives = 99/290 (34%), Gaps = 34/290 (11%)

Query: 160 FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLID 219
           + +  +V      +  V   L IQ GC + C FC           R +  + + A +++ 
Sbjct: 245 YPKAPVVPFIKATQDRVV--LEIQRGCIRGCRFCQAGMLYRPTRERDVEVLKEYAYEMLK 302

Query: 220 NGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIK 279
           N   E   L    ++   +          +L+  L E      +  +    R  +  L  
Sbjct: 303 NTGHEEISLSSLSSSDYSQ--------LKELVTYLIEAFKEEGINISLPSLRIDAFSL-D 353

Query: 280 AHGDLDVLMP-YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVG 338
               +  +    L    ++GS R+   +N+  T     +   +      +  +   F++G
Sbjct: 354 VMSKVQDVRKSSLTFAPEAGSQRLRDVINKGLTEEVILEGAGQAFEGGWN-KVKLYFMLG 412

Query: 339 FPGETDDDFRATMDLVDKI--GYAQA-------------FSFKYSPRLGTP--GSNMLEQ 381
            P ET++D +    L DKI   Y +               +  + P+  TP   + M   
Sbjct: 413 LPTETEEDMKEIPRLADKIARRYYEIPKEERNGKCQITTSTSFFIPKPFTPFQWARMYSN 472

Query: 382 VDENVKAERLL-CLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG 430
            +   +A  +    Q++L  + + +N         VL E       + +G
Sbjct: 473 KEYIARAAIVKHEFQEQLNRKSLKYN--WHDAETTVL-EGVLARGDRKIG 519


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.314    0.145    0.413 

Lambda     K      H
   0.267   0.0445    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,385,225,218
Number of Sequences: 14124377
Number of extensions: 372399293
Number of successful extensions: 1101238
Number of sequences better than 10.0: 10000
Number of HSP's better than 10.0 without gapping: 11267
Number of HSP's successfully gapped in prelim test: 11137
Number of HSP's that attempted gapping in prelim test: 1043400
Number of HSP's gapped (non-prelim): 24601
length of query: 469
length of database: 4,842,793,630
effective HSP length: 143
effective length of query: 326
effective length of database: 2,823,007,719
effective search space: 920300516394
effective search space used: 920300516394
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.4 bits)
S2: 83 (36.5 bits)